PeakID (cmd=annotatePeaks.pl consensus_peaks.mLb.clN.bed GRCm38.p6.genome.fa -gid -gtf gencode.vM25.annotation.gtf -cpu 6) Chr Start End Strand Peak Score Focus Ratio/Region Size Annotation Detailed Annotation Distance to TSS Nearest PromoterID Entrez ID Nearest Unigene Nearest Refseq Nearest Ensembl Gene Name Gene Alias Gene Description Gene Type Interval_59975 chr15 62481001 62481374 + 0 NA Intergenic Intergenic -86788 ENSMUSG00000115862.1 ENSMUSG00000115862 ENSMUST00000230029 Gm41333 lincRNA Interval_76589 chr17 82089722 82090020 + 0 NA Intergenic Intergenic 102738 ENSMUSG00000117507.1 ENSMUSG00000117507 ENSMUST00000234943 Gm50045 processed_pseudogene Interval_111236 chr4 15435988 15436212 + 0 NA Intergenic Intergenic -50266 ENSMUSG00000080869.1 ENSMUSG00000080869 ENSMUST00000118712 Gm11856 processed_pseudogene Interval_136646 chr6 56923434 56924565 + 0 NA promoter-TSS (ENSMUSG00000029780.14) protein_coding-promoter-TSS (ENSMUSG00000029780.14) -275 ENSMUSG00000029780.14 ENSMUSG00000029780 ENSMUST00000127725 Nt5c3 protein_coding Interval_36110 chr12 35966038 35966811 + 0 NA Intergenic Intergenic -26483 ENSMUSG00000020581.11 ENSMUSG00000020581 ENSMUST00000020898 Agr2 protein_coding Interval_102671 chr3 29432552 29432815 + 0 NA intron (ENSMUSG00000063600.14, intron 5 of 14) protein_coding-intron (ENSMUSG00000063600.14, intron 4 of 12) 15860 ENSMUSG00000076120.1 ENSMUSG00000076120 ENSMUST00000102165 Mir551b miRNA Interval_73377 chr17 36866727 36867706 + 0 NA promoter-TSS (ENSMUSG00000050747.14) protein_coding-promoter-TSS (ENSMUSG00000050747.14) -6 ENSMUSG00000050747.14 ENSMUSG00000050747 ENSMUST00000173639 Trim15 protein_coding Interval_154170 chr8 13194809 13195561 + 0 NA intron (ENSMUSG00000038515.10, intron 2 of 7) protein_coding-intron (ENSMUSG00000038515.10, intron 2 of 8) 5432 ENSMUSG00000038515.10 ENSMUSG00000038515 ENSMUST00000211128 Grtp1 protein_coding Interval_25342 chr11 46530545 46531694 + 0 NA intron (ENSMUSG00000078924.1, intron 3 of 6) protein_coding-intron (ENSMUSG00000078924.1, intron 3 of 6) 6907 ENSMUSG00000078924.1 ENSMUSG00000078924 ENSMUST00000109228 Gm12169 protein_coding Interval_44341 chr13 43891302 43891705 + 0 NA Intergenic Intergenic 18701 ENSMUSG00000089107.1 ENSMUSG00000089107 ENSMUST00000158482 Gm23117 snRNA Interval_80146 chr18 37859765 37860949 + 0 NA intron (ENSMUSG00000024456.16, intron 18 of 26) protein_coding-intron (ENSMUSG00000024456.16, intron 19 of 27) -5697 ENSMUSG00000098706.1 ENSMUSG00000098706 ENSMUST00000183927 Mir6979 miRNA Interval_135072 chr6 35176901 35178283 + 0 NA promoter-TSS (ENSMUSG00000038759.15) protein_coding-promoter-TSS (ENSMUSG00000038759.15) -24 ENSMUSG00000038759.15 ENSMUSG00000038759 ENSMUST00000200739 Nup205 protein_coding Interval_171916 chr9 122525309 122526148 + 0 NA Intergenic Intergenic 9292 ENSMUSG00000111221.1 ENSMUSG00000111221 ENSMUST00000214554 Gm47133 lincRNA Interval_35778 chr12 29290511 29291598 + 0 NA Intergenic Intergenic 26514 ENSMUSG00000112776.1 ENSMUSG00000112776 ENSMUST00000218409 Gm6989 processed_pseudogene Interval_54480 chr14 70148248 70148565 + 0 NA intron (ENSMUSG00000033712.6, intron 7 of 20) protein_coding-intron (ENSMUSG00000033712.6, intron 7 of 20) -7310 ENSMUSG00000033712.6 ENSMUSG00000033712 ENSMUST00000035612 Ccar2 protein_coding Interval_2651 chr1 42935550 42935773 + 0 NA Intergenic Intergenic -17211 ENSMUSG00000041907.9 ENSMUSG00000041907 ENSMUST00000114761 Gpr45 protein_coding Interval_48830 chr13 103779885 103781268 + 0 NA Intergenic Intergenic -11228 ENSMUSG00000032621.8 ENSMUSG00000032621 ENSMUST00000211139 Srek1 protein_coding Interval_79816 chr18 35277167 35277374 + 0 NA intron (ENSMUSG00000024357.10, intron 6 of 8) protein_coding-intron (ENSMUSG00000024357.10, intron 7 of 9) 13241 ENSMUSG00000117876.1 ENSMUSG00000117876 ENSMUST00000236119 Gm50146 antisense Interval_86767 chr19 43726298 43727130 + 0 NA exon (ENSMUSG00000025192.13, exon 1 of 2) protein_coding-exon (ENSMUSG00000025192.13, exon 1 of 2) 13388 ENSMUSG00000040018.9 ENSMUSG00000040018 ENSMUST00000129242 Cox15 protein_coding Interval_82314 chr18 70575330 70575626 + 0 NA intron (ENSMUSG00000024513.16, intron 1 of 2) protein_coding-intron (ENSMUSG00000024513.16, intron 1 of 6) -17777 ENSMUSG00000024513.16 ENSMUSG00000024513 ENSMUST00000128555 Mbd2 protein_coding Interval_110589 chr4 4287251 4287578 + 0 NA Intergenic Intergenic -148595 ENSMUSG00000045573.9 ENSMUSG00000045573 ENSMUST00000133567 Penk protein_coding Interval_124432 chr5 46445647 46446173 + 0 NA Intergenic Intergenic 31566 ENSMUSG00000067321.5 ENSMUSG00000067321 ENSMUST00000121537 Gm7931 processed_pseudogene Interval_6330 chr1 105989800 105991824 + 0 NA promoter-TSS (ENSMUSG00000099843.1) lincRNA-promoter-TSS (ENSMUSG00000099843.1) -560 ENSMUSG00000099843.1 ENSMUSG00000099843 ENSMUST00000188519 Gm7160 lincRNA Interval_164299 chr9 35129098 35129461 + 0 NA intron (ENSMUSG00000070315.12, intron 5 of 5) protein_coding-intron (ENSMUSG00000032040.15, intron 4 of 5) 12525 ENSMUSG00000070315.12 ENSMUSG00000070315 ENSMUST00000161136 4930581F22Rik processed_transcript Interval_106921 chr3 101923715 101924740 + 0 NA exon (ENSMUSG00000033147.16, exon 1 of 12) protein_coding-exon (ENSMUSG00000033147.16, exon 1 of 12) 222 ENSMUSG00000033147.16 ENSMUSG00000033147 ENSMUST00000182040 Slc22a15 protein_coding Interval_35006 chr12 16591163 16592191 + 0 NA intron (ENSMUSG00000020593.16, intron 2 of 21) protein_coding-intron (ENSMUSG00000020593.16, intron 1 of 20) 19289 ENSMUSG00000020593.16 ENSMUSG00000020593 ENSMUST00000221146 Lpin1 protein_coding Interval_79585 chr18 33881473 33882129 + 0 NA intron (ENSMUSG00000024376.7, intron 3 of 5) protein_coding-intron (ENSMUSG00000024376.7, intron 5 of 23) 86637 ENSMUSG00000092819.1 ENSMUSG00000092819 ENSMUST00000175078 Gm23639 snoRNA Interval_35342 chr12 20856616 20857159 + 0 NA Intergenic Intergenic 20184 ENSMUSG00000085642.8 ENSMUSG00000085642 ENSMUST00000127917 3110053B16Rik transcribed_unprocessed_pseudogene Interval_159335 chr8 93809876 93811016 + 0 NA promoter-TSS (ENSMUSG00000031748.16) protein_coding-promoter-TSS (ENSMUSG00000031748.16) 3276 ENSMUSG00000097520.2 ENSMUSG00000097520 ENSMUST00000212638 4930488L21Rik antisense Interval_162343 chr8 127284438 127284645 + 0 NA intron (ENSMUSG00000025812.18, intron 3 of 15) protein_coding-intron (ENSMUSG00000025812.18, intron 3 of 23) 113137 ENSMUSG00000025812.18 ENSMUSG00000025812 ENSMUST00000159940 Pard3 protein_coding Interval_24843 chr11 40216960 40217151 + 0 NA intron (ENSMUSG00000085301.1, intron 5 of 7) lincRNA-intron (ENSMUSG00000085301.1, intron 5 of 7) 206299 ENSMUSG00000082295.1 ENSMUSG00000082295 ENSMUST00000121775 Gm12133 processed_pseudogene Interval_163135 chr9 15555729 15556277 + 0 NA Intergenic Intergenic 62571 ENSMUSG00000058173.12 ENSMUSG00000058173 ENSMUST00000178999 Smco4 protein_coding Interval_136308 chr6 52829112 52830011 + 0 NA intron (ENSMUSG00000063568.11, intron 2 of 4) protein_coding-intron (ENSMUSG00000063568.11, intron 2 of 4) 14140 ENSMUSG00000081872.1 ENSMUSG00000081872 ENSMUST00000119248 Gm15572 processed_pseudogene Interval_85010 chr19 21372481 21373763 + 0 NA Intergenic Intergenic -59839 ENSMUSG00000118342.1 ENSMUSG00000118342 ENSMUST00000236886 Gm50255 lincRNA Interval_58896 chr15 39813201 39814518 + 0 NA intron (ENSMUSG00000022304.13, intron 7 of 9) protein_coding-intron (ENSMUSG00000022304.13, intron 7 of 9) 16814 ENSMUSG00000087695.1 ENSMUSG00000087695 ENSMUST00000147378 Gm16291 antisense Interval_124483 chr5 48737359 48737880 + 0 NA intron (ENSMUSG00000029088.16, intron 1 of 8) protein_coding-intron (ENSMUSG00000029088.16, intron 1 of 8) -21728 ENSMUSG00000105530.1 ENSMUSG00000105530 ENSMUST00000196191 Gm43829 TEC Interval_17884 chr10 80583546 80584985 + 0 NA exon (ENSMUSG00000003346.14, exon 4 of 5) protein_coding-exon (ENSMUSG00000003346.14, exon 4 of 5) 5525 ENSMUSG00000100201.1 ENSMUSG00000100201 ENSMUST00000187366 Gm29093 sense_intronic Interval_156853 chr8 61223434 61225019 + 0 NA promoter-TSS (ENSMUSG00000031642.9) protein_coding-promoter-TSS (ENSMUSG00000031642.9) -29578 ENSMUSG00000086681.1 ENSMUSG00000086681 ENSMUST00000129408 Gm16178 antisense Interval_119073 chr4 135366890 135368661 + 0 NA Intergenic Intergenic -9383 ENSMUSG00000084032.1 ENSMUSG00000084032 ENSMUST00000120561 Gm12991 processed_pseudogene Interval_55479 chr14 88205406 88205913 + 0 NA Intergenic Intergenic 78661 ENSMUSG00000089120.1 ENSMUSG00000089120 ENSMUST00000158495 Gm26405 rRNA Interval_72517 chr17 30369591 30369835 + 0 NA intron (ENSMUSG00000062202.14, intron 6 of 6) protein_coding-intron (ENSMUSG00000062202.14, intron 6 of 11) 26320 ENSMUSG00000117962.1 ENSMUSG00000117962 ENSMUST00000235315 Gm6402 processed_pseudogene Interval_3106 chr1 53377374 53377666 + 0 NA Intergenic Intergenic -12895 ENSMUSG00000100069.1 ENSMUSG00000100069 ENSMUST00000190697 Gm6801 unprocessed_pseudogene Interval_137964 chr6 83775185 83776447 + 0 NA promoter-TSS (ENSMUSG00000014748.13) protein_coding-promoter-TSS (ENSMUSG00000014748.13) -58 ENSMUSG00000014748.13 ENSMUSG00000014748 ENSMUST00000138192 Tex261 protein_coding Interval_7319 chr1 128859332 128861311 + 0 NA Intergenic Intergenic 25698 ENSMUSG00000064737.1 ENSMUSG00000064737 ENSMUST00000082803 Gm23056 snRNA Interval_83331 chr18 84277483 84279025 + 0 NA intron (ENSMUSG00000048410.17, intron 8 of 8) protein_coding-intron (ENSMUSG00000048410.17, intron 2 of 2) 75330 ENSMUSG00000118385.1 ENSMUSG00000118385 ENSMUST00000238064 Gm50311 antisense Interval_36416 chr12 44202079 44202541 + 0 NA TTS (ENSMUSG00000111920.1) processed_pseudogene-TTS (ENSMUSG00000111920.1) 861 ENSMUSG00000111920.1 ENSMUSG00000111920 ENSMUST00000219471 Gm7370 processed_pseudogene Interval_75755 chr17 71064527 71065149 + 0 NA intron (ENSMUSG00000024049.15, intron 12 of 17) protein_coding-intron (ENSMUSG00000024049.15, intron 12 of 36) 62205 ENSMUSG00000024049.15 ENSMUSG00000024049 ENSMUST00000233790 Myom1 protein_coding Interval_127549 chr5 105139026 105141585 + 0 NA promoter-TSS (ENSMUSG00000034438.16) protein_coding-promoter-TSS (ENSMUSG00000034438.16) -761 ENSMUSG00000079363.7 ENSMUSG00000079363 ENSMUST00000198278 Gbp4 protein_coding Interval_133803 chr6 12417129 12417648 + 0 NA intron (ENSMUSG00000032625.14, intron 7 of 27) protein_coding-intron (ENSMUSG00000032625.14, intron 7 of 27) -148130 ENSMUSG00000083794.1 ENSMUSG00000083794 ENSMUST00000118647 Gm16123 processed_pseudogene Interval_44699 chr13 47262090 47262477 + 0 NA Intergenic Intergenic 68458 ENSMUSG00000038068.15 ENSMUSG00000038068 ENSMUST00000110111 Rnf144b protein_coding Interval_19908 chr10 111125915 111126190 + 0 NA exon (ENSMUSG00000091086.2, exon 1 of 1) processed_pseudogene-exon (ENSMUSG00000091086.2, exon 1 of 1) 201 ENSMUSG00000091086.2 ENSMUSG00000091086 ENSMUST00000171120 Rpl6l processed_pseudogene Interval_123504 chr5 33012036 33012596 + 0 NA Intergenic Intergenic -6562 ENSMUSG00000018965.11 ENSMUSG00000018965 ENSMUST00000136667 Ywhah protein_coding Interval_99544 chr2 163061481 163062912 + 0 NA intron (ENSMUSG00000017861.11, intron 2 of 3) protein_coding-intron (ENSMUSG00000017861.11, intron 3 of 13) -5894 ENSMUSG00000099091.1 ENSMUSG00000099091 ENSMUST00000184607 Mir7003 miRNA Interval_4997 chr1 83989733 83989974 + 0 NA Intergenic Intergenic 67935 ENSMUSG00000077736.1 ENSMUSG00000077736 ENSMUST00000104548 Gm24555 snoRNA Interval_100877 chr2 173058423 173058616 + 0 NA Intergenic Intergenic -23939 ENSMUSG00000087442.1 ENSMUSG00000087442 ENSMUST00000139677 Gm14453 antisense Interval_17721 chr10 79740868 79741375 + 0 NA intron (ENSMUSG00000020329.12, intron 6 of 19) protein_coding-intron (ENSMUSG00000020329.12, intron 6 of 20) 5450 ENSMUSG00000020329.12 ENSMUSG00000020329 ENSMUST00000161375 Polrmt protein_coding Interval_25572 chr11 49869583 49870257 + 0 NA intron (ENSMUSG00000020366.18, intron 5 of 11) protein_coding-intron (ENSMUSG00000020366.18, intron 5 of 11) 23169 ENSMUSG00000020366.18 ENSMUSG00000020366 ENSMUST00000043321 Mapk9 protein_coding Interval_7316 chr1 128824198 128824779 + 0 NA Intergenic Intergenic -50067 ENSMUSG00000097283.1 ENSMUSG00000097283 ENSMUST00000181951 Gm26686 lincRNA Interval_140396 chr6 117833808 117834334 + 0 NA Intergenic Intergenic -7183 ENSMUSG00000059689.15 ENSMUSG00000059689 ENSMUST00000132644 Zfp637 protein_coding Interval_17096 chr10 71332145 71333214 + 0 NA intron (ENSMUSG00000037710.8, intron 2 of 2) protein_coding-intron (ENSMUSG00000037710.8, intron 2 of 2) 12275 ENSMUSG00000037710.8 ENSMUSG00000037710 ENSMUST00000045887 Cisd1 protein_coding Interval_36191 chr12 38729185 38731099 + 0 NA Intergenic Intergenic 12068 ENSMUSG00000113520.1 ENSMUSG00000113520 ENSMUST00000222877 Gm4257 processed_pseudogene Interval_117213 chr4 120634940 120635205 + 0 NA Intergenic Intergenic 13065 ENSMUSG00000110389.1 ENSMUSG00000110389 ENSMUST00000209367 Gm45579 lincRNA Interval_87603 chr19 53682186 53682912 + 0 NA intron (ENSMUSG00000043639.15, intron 1 of 13) protein_coding-intron (ENSMUSG00000043639.15, intron 1 of 13) 5243 ENSMUSG00000043639.15 ENSMUSG00000043639 ENSMUST00000161856 Rbm20 protein_coding Interval_58473 chr15 34944534 34946327 + 0 NA intron (ENSMUSG00000022329.15, intron 9 of 10) protein_coding-intron (ENSMUSG00000022329.15, intron 9 of 10) 14807 ENSMUSG00000022329.15 ENSMUSG00000022329 ENSMUST00000138841 Stk3 protein_coding Interval_95253 chr2 105229943 105232067 + 0 NA intron (ENSMUSG00000055312.2, intron 1 of 2) protein_coding-intron (ENSMUSG00000055312.2, intron 1 of 3) 6663 ENSMUSG00000055312.2 ENSMUSG00000055312 ENSMUST00000131060 Them7 protein_coding Interval_135959 chr6 49098587 49099766 + 0 NA intron (ENSMUSG00000029814.10, intron 9 of 9) protein_coding-intron (ENSMUSG00000029814.10, intron 10 of 14) -4965 ENSMUSG00000029814.10 ENSMUSG00000029814 ENSMUST00000203680 Igf2bp3 protein_coding Interval_70433 chr17 10198297 10198688 + 0 NA Intergenic Intergenic 120869 ENSMUSG00000062078.15 ENSMUSG00000062078 ENSMUST00000233684 Qk protein_coding Interval_57910 chr15 25343288 25344987 + 0 NA Intergenic Intergenic -11489 ENSMUSG00000115355.1 ENSMUSG00000115355 ENSMUST00000228450 4930445E18Rik lincRNA Interval_79337 chr18 30689732 30690644 + 0 NA Intergenic Intergenic -81298 ENSMUSG00000117526.1 ENSMUSG00000117526 ENSMUST00000235078 Gm41780 processed_pseudogene Interval_63853 chr16 4003300 4004407 + 0 NA promoter-TSS (ENSMUSG00000039738.16) protein_coding-promoter-TSS (ENSMUSG00000039738.16) -83 ENSMUSG00000039738.16 ENSMUSG00000039738 ENSMUST00000171658 Slx4 protein_coding Interval_79183 chr18 25504804 25505614 + 0 NA intron (ENSMUSG00000024268.16, intron 3 of 11) protein_coding-intron (ENSMUSG00000024268.16, intron 3 of 12) -3970 ENSMUSG00000024268.16 ENSMUSG00000024268 ENSMUST00000224143 Celf4 protein_coding Interval_127509 chr5 104728066 104729246 + 0 NA Intergenic Intergenic -47123 ENSMUSG00000048334.8 ENSMUSG00000048334 ENSMUST00000055593 Gm8258 processed_pseudogene Interval_144839 chr7 28548192 28548388 + 0 NA intron (ENSMUSG00000109336.1, intron 1 of 12) protein_coding-intron (ENSMUSG00000109336.1, intron 1 of 12) -1036 ENSMUSG00000047586.4 ENSMUSG00000047586 ENSMUST00000057974 Nccrp1 protein_coding Interval_117756 chr4 126053407 126053744 + 0 NA intron (ENSMUSG00000028861.13, intron 6 of 7) protein_coding-intron (ENSMUSG00000028861.13, intron 6 of 7) 6598 ENSMUSG00000028861.13 ENSMUSG00000028861 ENSMUST00000124614 Mrps15 protein_coding Interval_85253 chr19 24176475 24177236 + 0 NA intron (ENSMUSG00000024812.11, intron 1 of 22) protein_coding-intron (ENSMUSG00000024812.11, intron 1 of 22) 22785 ENSMUSG00000118371.1 ENSMUSG00000118371 ENSMUST00000237530 Gm50308 processed_pseudogene Interval_127955 chr5 109829157 109830996 + 0 NA Intergenic Intergenic 4069 ENSMUSG00000105044.1 ENSMUSG00000105044 ENSMUST00000197379 Gm10416 TEC Interval_149582 chr7 99827967 99828698 + 0 NA promoter-TSS (ENSMUSG00000035239.6) protein_coding-promoter-TSS (ENSMUSG00000035239.6) 85 ENSMUSG00000035239.6 ENSMUSG00000035239 ENSMUST00000036331 Neu3 protein_coding Interval_77309 chr17 87962547 87964334 + 0 NA Intergenic Intergenic 5780 ENSMUSG00000117522.1 ENSMUSG00000117522 ENSMUST00000234265 Gm50041 processed_pseudogene Interval_159628 chr8 95861779 95862261 + 0 NA Intergenic Intergenic -8498 ENSMUSG00000036534.6 ENSMUSG00000036534 ENSMUST00000153835 Slc38a7 protein_coding Interval_66835 chr16 37974640 37975826 + 0 NA intron (ENSMUSG00000046961.8, intron 3 of 9) protein_coding-intron (ENSMUSG00000046961.8, intron 3 of 9) -4854 ENSMUSG00000065188.1 ENSMUSG00000065188 ENSMUST00000083254 Gm25140 snRNA Interval_168294 chr9 78480576 78482552 + 0 NA promoter-TSS (ENSMUSG00000037742.14) protein_coding-promoter-TSS (ENSMUSG00000037742.14) -723 ENSMUSG00000037742.14 ENSMUSG00000037742 ENSMUST00000156988 Eef1a1 protein_coding Interval_153098 chr7 141346219 141346642 + 0 NA intron (ENSMUSG00000025504.14, intron 1 of 3) protein_coding-intron (ENSMUSG00000025504.14, intron 4 of 20) 7450 ENSMUSG00000025504.14 ENSMUSG00000025504 ENSMUST00000155729 Eps8l2 protein_coding Interval_24339 chr11 32518964 32519242 + 0 NA Intergenic Intergenic 12978 ENSMUSG00000044056.3 ENSMUSG00000044056 ENSMUST00000109377 Efcab9 protein_coding Interval_92825 chr2 65990037 65990324 + 0 NA intron (ENSMUSG00000044647.16, intron 3 of 4) protein_coding-intron (ENSMUSG00000044647.16, intron 3 of 5) -36110 ENSMUSG00000085160.1 ENSMUSG00000085160 ENSMUST00000155350 Gm13617 antisense Interval_37758 chr12 71767970 71769395 + 0 NA promoter-TSS (ENSMUSG00000113422.1) processed_pseudogene-promoter-TSS (ENSMUSG00000113422.1) -682 ENSMUSG00000113422.1 ENSMUSG00000113422 ENSMUST00000221469 Gm47556 processed_pseudogene Interval_53622 chr14 60191456 60191658 + 0 NA intron (ENSMUSG00000063895.7, intron 14 of 15) protein_coding-intron (ENSMUSG00000021983.16, intron 1 of 6) 5586 ENSMUSG00000021983.16 ENSMUSG00000021983 ENSMUST00000152688 Atp8a2 protein_coding Interval_24607 chr11 35169273 35169723 + 0 NA intron (ENSMUSG00000056427.10, intron 1 of 35) protein_coding-intron (ENSMUSG00000056427.10, intron 1 of 35) -2131 ENSMUSG00000056427.10 ENSMUSG00000056427 ENSMUST00000124438 Slit3 protein_coding Interval_55219 chr14 79413050 79413593 + 0 NA intron (ENSMUSG00000022022.3, intron 8 of 9) protein_coding-intron (ENSMUSG00000022022.3, intron 8 of 10) -13190 ENSMUSG00000043881.9 ENSMUSG00000043881 ENSMUST00000061222 Kbtbd7 protein_coding Interval_132598 chr5 146644502 146645016 + 0 NA Intergenic Intergenic -44657 ENSMUSG00000105907.1 ENSMUSG00000105907 ENSMUST00000200363 Gm34333 lincRNA Interval_28836 chr11 78657337 78657787 + 0 NA intron (ENSMUSG00000017376.15, intron 1 of 2) protein_coding-intron (ENSMUSG00000017376.15, intron 1 of 10) 52199 ENSMUSG00000085115.1 ENSMUSG00000085115 ENSMUST00000145158 Gm11197 processed_pseudogene Interval_120946 chr4 151860912 151862957 + 0 NA promoter-TSS (ENSMUSG00000014592.21) protein_coding-promoter-TSS (ENSMUSG00000014592.21) -230 ENSMUSG00000014592.21 ENSMUSG00000014592 ENSMUST00000135780 Camta1 protein_coding Interval_30628 chr11 95565246 95565787 + 0 NA Intergenic Intergenic 22219 ENSMUSG00000000120.6 ENSMUSG00000000120 ENSMUST00000000122 Ngfr protein_coding Interval_47408 chr13 83656759 83656969 + 0 NA intron (ENSMUSG00000005583.16, intron 6 of 6) protein_coding-intron (ENSMUSG00000005583.16, intron 10 of 10) -30358 ENSMUSG00000114254.1 ENSMUSG00000114254 ENSMUST00000224411 Gm48067 processed_pseudogene Interval_115802 chr4 104642891 104644266 + 0 NA intron (ENSMUSG00000028519.16, intron 2 of 6) protein_coding-intron (ENSMUSG00000028519.16, intron 3 of 5) 38282 ENSMUSG00000028519.16 ENSMUSG00000028519 ENSMUST00000149672 Dab1 protein_coding Interval_38896 chr12 83667068 83667384 + 0 NA intron (ENSMUSG00000010608.15, intron 9 of 17) protein_coding-intron (ENSMUSG00000010608.15, intron 10 of 18) 4250 ENSMUSG00000010608.15 ENSMUSG00000010608 ENSMUST00000183181 Rbm25 protein_coding Interval_166009 chr9 55416682 55417012 + 0 NA intron (ENSMUSG00000032313.11, intron 8 of 10) protein_coding-intron (ENSMUSG00000032313.11, intron 7 of 10) 83646 ENSMUSG00000032313.11 ENSMUSG00000032313 ENSMUST00000130465 Tmem266 protein_coding Interval_56591 chr14 120649037 120649767 + 0 NA intron (ENSMUSG00000115648.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000115648.1, intron 1 of 1) 16440 ENSMUSG00000115648.1 ENSMUSG00000115648 ENSMUST00000226920 Gm49008 lincRNA Interval_73303 chr17 36082819 36084610 + 0 NA exon (ENSMUSG00000073406.10, exon 2 of 6) polymorphic_pseudogene-exon (ENSMUSG00000073406.10, exon 2 of 6) 509 ENSMUSG00000073406.10 ENSMUSG00000073406 ENSMUST00000192532 H2-Bl polymorphic_pseudogene Interval_49327 chr13 110967061 110968792 + 0 NA Intergenic Intergenic 50895 ENSMUSG00000114747.1 ENSMUSG00000114747 ENSMUST00000223653 Gm48547 processed_pseudogene Interval_46837 chr13 72121025 72122960 + 0 NA Intergenic Intergenic -161276 ENSMUSG00000060969.9 ENSMUSG00000060969 ENSMUST00000223460 Irx1 protein_coding Interval_20246 chr10 116417780 116418555 + 0 NA exon (ENSMUSG00000054934.10, exon 3 of 3) protein_coding-exon (ENSMUSG00000054934.10, exon 3 of 3) 115 ENSMUSG00000020164.7 ENSMUSG00000020164 ENSMUST00000134586 Kcnmb4os1 antisense Interval_165038 chr9 44083924 44085481 + 0 NA promoter-TSS (ENSMUSG00000032010.15) protein_coding-promoter-TSS (ENSMUSG00000032010.15) -7766 ENSMUSG00000032010.15 ENSMUSG00000032010 ENSMUST00000176022 Usp2 protein_coding Interval_165142 chr9 44788942 44789167 + 0 NA promoter-TSS (ENSMUSG00000002031.13) protein_coding-promoter-TSS (ENSMUSG00000002031.13) 10137 ENSMUSG00000002032.17 ENSMUSG00000002032 ENSMUST00000214431 Tmem25 protein_coding Interval_101416 chr2 181159643 181160283 + 0 NA Intergenic Intergenic -2949 ENSMUSG00000016349.10 ENSMUSG00000016349 ENSMUST00000055990 Eef1a2 protein_coding Interval_82539 chr18 75018404 75019749 + 0 NA intron (ENSMUSG00000035765.10, intron 1 of 8) protein_coding-intron (ENSMUSG00000035765.10, intron 1 of 16) -4780 ENSMUSG00000098305.1 ENSMUSG00000098305 ENSMUST00000185185 Gm27781 rRNA Interval_102258 chr3 20057256 20058409 + 0 NA promoter-TSS (ENSMUSG00000002428.12) protein_coding-promoter-TSS (ENSMUSG00000002428.12) -22538 ENSMUSG00000027615.14 ENSMUSG00000027615 ENSMUST00000133094 Hps3 protein_coding Interval_149621 chr7 100108064 100108977 + 0 NA exon (ENSMUSG00000030726.16, exon 4 of 12) protein_coding-exon (ENSMUSG00000030726.16, exon 4 of 12) -7060 ENSMUSG00000030726.16 ENSMUSG00000030726 ENSMUST00000156202 Pold3 protein_coding Interval_67415 chr16 48474844 48475743 + 0 NA intron (ENSMUSG00000022652.7, intron 8 of 26) protein_coding-intron (ENSMUSG00000022652.7, intron 8 of 26) -4339 ENSMUSG00000022652.7 ENSMUSG00000022652 ENSMUST00000232195 Morc1 protein_coding Interval_98271 chr2 150687907 150689491 + 0 NA exon (ENSMUSG00000033080.9, exon 1 of 5) protein_coding-exon (ENSMUSG00000033080.9, exon 1 of 5) 661 ENSMUSG00000033080.9 ENSMUSG00000033080 ENSMUST00000046095 Vsx1 protein_coding Interval_132502 chr5 145601091 145601381 + 0 NA Intergenic Intergenic -5276 ENSMUSG00000106033.1 ENSMUSG00000106033 ENSMUST00000198553 Gm43381 processed_pseudogene Interval_117353 chr4 123189263 123189605 + 0 NA TTS (ENSMUSG00000046093.9) protein_coding-TTS (ENSMUSG00000046093.9) 5705 ENSMUSG00000046093.9 ENSMUSG00000046093 ENSMUST00000152194 Hpcal4 protein_coding Interval_52924 chr14 52080772 52081093 + 0 NA TTS (ENSMUSG00000060373.15) protein_coding-TTS (ENSMUSG00000060373.15) -9005 ENSMUSG00000115541.1 ENSMUSG00000115541 ENSMUST00000227288 Gm49258 processed_pseudogene Interval_147879 chr7 74983433 74983841 + 0 NA Intergenic Intergenic -20940 ENSMUSG00000089522.1 ENSMUSG00000089522 ENSMUST00000158897 Gm22326 misc_RNA Interval_112658 chr4 43886315 43886561 + 0 NA intron (ENSMUSG00000028476.13, intron 1 of 21) protein_coding-intron (ENSMUSG00000028476.13, intron 1 of 20) -18640 ENSMUSG00000099252.1 ENSMUSG00000099252 ENSMUST00000183559 Gm27265 misc_RNA Interval_63672 chr15 102704456 102705442 + 0 NA Intergenic Intergenic 5111 ENSMUSG00000023055.10 ENSMUSG00000023055 ENSMUST00000230374 Calcoco1 protein_coding Interval_132629 chr5 146832545 146833603 + 0 NA promoter-TSS (ENSMUSG00000041453.12) protein_coding-promoter-TSS (ENSMUSG00000041453.12) -72 ENSMUSG00000041453.12 ENSMUSG00000041453 ENSMUST00000135345 Rpl21 protein_coding Interval_150999 chr7 117522079 117522978 + 0 NA intron (ENSMUSG00000030657.11, intron 1 of 1) protein_coding-intron (ENSMUSG00000030657.11, intron 2 of 11) 47036 ENSMUSG00000030657.11 ENSMUSG00000030657 ENSMUST00000161889 Xylt1 protein_coding Interval_113638 chr4 57185459 57186364 + 0 NA Intergenic Intergenic 13840 ENSMUSG00000085967.1 ENSMUSG00000085967 ENSMUST00000152074 Gm12530 antisense Interval_67799 chr16 57264953 57265177 + 0 NA TTS (ENSMUSG00000116675.1) processed_pseudogene-TTS (ENSMUSG00000116675.1) 740 ENSMUSG00000116675.1 ENSMUSG00000116675 ENSMUST00000231600 Gm49581 processed_pseudogene Interval_151127 chr7 118721474 118721922 + 0 NA promoter-TSS (ENSMUSG00000033904.16) protein_coding-promoter-TSS (ENSMUSG00000033904.16) -4857 ENSMUSG00000033904.16 ENSMUSG00000033904 ENSMUST00000140831 Ccp110 protein_coding Interval_49682 chr13 113980501 113980748 + 0 NA intron (ENSMUSG00000042348.10, intron 5 of 5) protein_coding-intron (ENSMUSG00000042348.10, intron 4 of 4) 139792 ENSMUSG00000114696.1 ENSMUSG00000114696 ENSMUST00000223997 Gm47479 TEC Interval_158339 chr8 81898199 81898464 + 0 NA intron (ENSMUSG00000037940.17, intron 10 of 24) protein_coding-intron (ENSMUSG00000037940.17, intron 8 of 22) 70633 ENSMUSG00000091998.2 ENSMUSG00000091998 ENSMUST00000166673 Gm17072 processed_pseudogene Interval_71281 chr17 21870877 21872552 + 0 NA Intergenic Intergenic -25942 ENSMUSG00000069743.5 ENSMUSG00000069743 ENSMUST00000232918 Zfp820 protein_coding Interval_672 chr1 9768308 9769097 + 0 NA intron (ENSMUSG00000097893.8, intron 3 of 4) antisense-intron (ENSMUSG00000097893.8, intron 2 of 6) 20076 ENSMUSG00000097893.8 ENSMUSG00000097893 ENSMUST00000189322 1700034P13Rik antisense Interval_162850 chr9 10348544 10349419 + 0 NA intron (ENSMUSG00000039488.15, intron 3 of 24) protein_coding-intron (ENSMUSG00000039488.15, intron 1 of 22) -53825 ENSMUSG00000096815.1 ENSMUSG00000096815 ENSMUST00000179931 Gm25086 miRNA Interval_153337 chr7 143739651 143740849 + 0 NA promoter-TSS (ENSMUSG00000037606.18) protein_coding-promoter-TSS (ENSMUSG00000037606.18) 49 ENSMUSG00000037606.18 ENSMUSG00000037606 ENSMUST00000153864 Osbpl5 protein_coding Interval_58664 chr15 36888497 36889020 + 0 NA Intergenic Intergenic -8942 ENSMUSG00000072618.2 ENSMUSG00000072618 ENSMUST00000100713 Gm10384 lincRNA Interval_41308 chr12 112619577 112620872 + 0 NA exon (ENSMUSG00000011148.14, exon 1 of 13) protein_coding-exon (ENSMUSG00000011148.14, exon 1 of 13) 147 ENSMUSG00000011148.14 ENSMUSG00000011148 ENSMUST00000221720 Adssl1 protein_coding Interval_114767 chr4 84894587 84895124 + 0 NA intron (ENSMUSG00000038070.15, intron 2 of 25) protein_coding-intron (ENSMUSG00000038070.15, intron 2 of 25) 10390 ENSMUSG00000038070.15 ENSMUSG00000038070 ENSMUST00000107190 Cntln protein_coding Interval_80 GL456216.1 41065 41632 + 0 NA NA NA NA NA Interval_137462 chr6 72597915 72599075 + 0 NA promoter-TSS (ENSMUSG00000056666.13) protein_coding-promoter-TSS (ENSMUSG00000056666.13) -82 ENSMUSG00000056698.11 ENSMUSG00000056698 ENSMUST00000152705 Elmod3 protein_coding Interval_5477 chr1 89130774 89132128 + 0 NA intron (ENSMUSG00000036206.12, intron 2 of 5) protein_coding-intron (ENSMUSG00000036206.12, intron 2 of 5) 34378 ENSMUSG00000102700.1 ENSMUSG00000102700 ENSMUST00000195426 Gm38312 TEC Interval_11894 chr1 186833371 186834824 + 0 NA Intergenic Intergenic 84701 ENSMUSG00000097784.1 ENSMUSG00000097784 ENSMUST00000180869 A430105J06Rik lincRNA Interval_90729 chr2 32153067 32154495 + 0 NA intron (ENSMUSG00000039262.16, intron 1 of 31) protein_coding-intron (ENSMUSG00000039262.16, intron 1 of 29) -19390 ENSMUSG00000099155.1 ENSMUSG00000099155 ENSMUST00000184513 Gm27805 miRNA Interval_71472 chr17 24007614 24008428 + 0 NA Intergenic Intergenic -2011 ENSMUSG00000098964.1 ENSMUSG00000098964 ENSMUST00000185003 Gm27700 miRNA Interval_51008 chr14 21584555 21585015 + 0 NA intron (ENSMUSG00000021767.19, intron 2 of 5) protein_coding-intron (ENSMUSG00000021767.19, intron 2 of 16) 67910 ENSMUSG00000021767.19 ENSMUSG00000021767 ENSMUST00000226589 Kat6b protein_coding Interval_126199 chr5 82150267 82150553 + 0 NA Intergenic Intergenic -25700 ENSMUSG00000099863.1 ENSMUSG00000099863 ENSMUST00000186079 1700031L13Rik protein_coding Interval_66217 chr16 32378066 32378276 + 0 NA intron (ENSMUSG00000053774.9, intron 7 of 9) protein_coding-intron (ENSMUSG00000053774.9, intron 8 of 10) -22335 ENSMUSG00000079625.2 ENSMUSG00000079625 ENSMUST00000115149 Tm4sf19 protein_coding Interval_34595 chr12 6512554 6513263 + 0 NA Intergenic Intergenic -14293 ENSMUSG00000111967.1 ENSMUSG00000111967 ENSMUST00000218888 Gm3678 processed_pseudogene Interval_152404 chr7 132801344 132801674 + 0 NA intron (ENSMUSG00000030956.15, intron 1 of 3) protein_coding-intron (ENSMUSG00000030956.15, intron 1 of 3) 1241 ENSMUSG00000030956.15 ENSMUSG00000030956 ENSMUST00000148303 Fam53b protein_coding Interval_169963 chr9 103275830 103277824 + 0 NA intron (ENSMUSG00000033688.10, intron 5 of 7) protein_coding-intron (ENSMUSG00000033688.10, intron 5 of 16) -10602 ENSMUSG00000033688.10 ENSMUSG00000033688 ENSMUST00000142540 1300017J02Rik protein_coding Interval_41717 chr12 118263488 118263928 + 0 NA intron (ENSMUSG00000025323.10, intron 1 of 1) protein_coding-intron (ENSMUSG00000025323.10, intron 3 of 5) -29144 ENSMUSG00000113831.1 ENSMUSG00000113831 ENSMUST00000220671 Gm49602 lincRNA Interval_20313 chr10 116815186 116817290 + 0 NA intron (ENSMUSG00000034057.8, intron 13 of 24) protein_coding-intron (ENSMUSG00000034057.8, intron 13 of 24) 80681 ENSMUSG00000034057.8 ENSMUSG00000034057 ENSMUST00000048229 Myrfl protein_coding Interval_63234 chr15 99861822 99862269 + 0 NA intron (ENSMUSG00000023022.14, intron 1 of 1) protein_coding-intron (ENSMUSG00000023022.14, intron 1 of 10) 12626 ENSMUSG00000023022.14 ENSMUSG00000023022 ENSMUST00000171450 Lima1 protein_coding Interval_81623 chr18 62264234 62266301 + 0 NA Intergenic Intergenic -75783 ENSMUSG00000026322.9 ENSMUSG00000026322 ENSMUST00000236691 Htr4 protein_coding Interval_114242 chr4 69841867 69842115 + 0 NA Intergenic Intergenic -11956 ENSMUSG00000085627.2 ENSMUSG00000085627 ENSMUST00000119005 Gm11222 processed_pseudogene Interval_97722 chr2 143390924 143391682 + 0 NA Intergenic Intergenic 41791 ENSMUSG00000083787.1 ENSMUSG00000083787 ENSMUST00000119735 Gm11644 processed_pseudogene Interval_113587 chr4 56871725 56872251 + 0 NA exon (ENSMUSG00000055296.14, exon 18 of 18) protein_coding-exon (ENSMUSG00000055296.14, exon 18 of 18) 23310 ENSMUSG00000065544.1 ENSMUSG00000065544 ENSMUST00000083610 Mir32 miRNA Interval_61224 chr15 80082581 80084128 + 0 NA promoter-TSS (ENSMUSG00000060036.14) protein_coding-promoter-TSS (ENSMUSG00000060036.14) -400 ENSMUSG00000105167.1 ENSMUSG00000105167 ENSMUST00000199549 Snord43 miRNA Interval_17310 chr10 75767820 75768017 + 0 NA TTS (ENSMUSG00000112789.1) processed_pseudogene-TTS (ENSMUSG00000112789.1) 757 ENSMUSG00000112789.1 ENSMUSG00000112789 ENSMUST00000219818 Gm19326 processed_pseudogene Interval_13889 chr10 24311925 24312591 + 0 NA Intergenic Intergenic 88713 ENSMUSG00000020000.7 ENSMUSG00000020000 ENSMUST00000154916 Moxd1 protein_coding Interval_128497 chr5 113654318 113654674 + 0 NA Intergenic Intergenic -4100 ENSMUSG00000042190.12 ENSMUSG00000042190 ENSMUST00000151460 Cmklr1 protein_coding Interval_34806 chr12 11389220 11389600 + 0 NA intron (ENSMUSG00000054459.8, intron 1 of 3) protein_coding-intron (ENSMUSG00000054459.8, intron 1 of 3) 46230 ENSMUSG00000054459.8 ENSMUSG00000054459 ENSMUST00000072299 Vsnl1 protein_coding Interval_50487 chr14 13995285 13995690 + 0 NA intron (ENSMUSG00000021738.5, intron 2 of 12) protein_coding-intron (ENSMUSG00000021738.5, intron 1 of 12) -17657 ENSMUSG00000021738.5 ENSMUSG00000021738 ENSMUST00000224315 Atxn7 protein_coding Interval_136409 chr6 54204959 54205705 + 0 NA intron (ENSMUSG00000004633.17, intron 3 of 4) protein_coding-intron (ENSMUSG00000004633.17, intron 3 of 12) -27649 ENSMUSG00000080205.2 ENSMUSG00000080205 ENSMUST00000112504 Gm15526 processed_pseudogene Interval_137228 chr6 70477267 70477999 + 0 NA Intergenic Intergenic 16030 ENSMUSG00000106315.1 ENSMUSG00000106315 ENSMUST00000196813 Gm42720 IG_V_pseudogene Interval_19300 chr10 96333459 96334922 + 0 NA intron (ENSMUSG00000112290.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000112290.1, intron 1 of 2) 11634 ENSMUSG00000112749.1 ENSMUSG00000112749 ENSMUST00000218388 Gm48428 lincRNA Interval_72585 chr17 30835605 30835848 + 0 NA intron (ENSMUSG00000033826.10, intron 85 of 90) protein_coding-intron (ENSMUSG00000033826.10, intron 87 of 92) 21710 ENSMUSG00000117760.1 ENSMUSG00000117760 ENSMUST00000237260 Gm41561 antisense Interval_52792 chr14 50323535 50324037 + 0 NA intron (ENSMUSG00000045306.3, intron 1 of 1) protein_coding-intron (ENSMUSG00000045306.3, intron 1 of 2) 2975 ENSMUSG00000045306.3 ENSMUSG00000045306 ENSMUST00000050928 Olfr734 protein_coding Interval_87357 chr19 47932077 47932494 + 0 NA Intergenic Intergenic -5390 ENSMUSG00000046585.9 ENSMUSG00000046585 ENSMUST00000066308 Cfap58 protein_coding Interval_174682 chrX 162879440 162880190 + 0 NA intron (ENSMUSG00000031357.3, intron 3 of 8) protein_coding-intron (ENSMUSG00000031357.3, intron 3 of 8) -4820 ENSMUSG00000092752.1 ENSMUSG00000092752 ENSMUST00000175011 Mir3473a miRNA Interval_59389 chr15 52043153 52043760 + 0 NA intron (ENSMUSG00000068522.4, intron 1 of 1) protein_coding-intron (ENSMUSG00000068522.4, intron 1 of 1) 3349 ENSMUSG00000068522.4 ENSMUSG00000068522 ENSMUST00000090025 Aard protein_coding Interval_91417 chr2 38652698 38653148 + 0 NA Intergenic Intergenic -9003 ENSMUSG00000026750.6 ENSMUSG00000026750 ENSMUST00000151981 Psmb7 protein_coding Interval_157025 chr8 64582728 64583449 + 0 NA Intergenic Intergenic 38909 ENSMUSG00000037852.8 ENSMUSG00000037852 ENSMUST00000211312 Cpe protein_coding Interval_7071 chr1 125389104 125389359 + 0 NA Intergenic Intergenic 46250 ENSMUSG00000026341.16 ENSMUSG00000026341 ENSMUST00000188827 Actr3 protein_coding Interval_155679 chr8 36101290 36101844 + 0 NA exon (ENSMUSG00000050271.12, exon 2 of 2) protein_coding-exon (ENSMUSG00000050271.12, exon 2 of 2) 6706 ENSMUSG00000050271.12 ENSMUSG00000050271 ENSMUST00000150295 Prag1 protein_coding Interval_152569 chr7 134696008 134696883 + 0 NA intron (ENSMUSG00000058325.6, intron 1 of 18) protein_coding-intron (ENSMUSG00000058325.6, intron 1 of 51) 25758 ENSMUSG00000058325.6 ENSMUSG00000058325 ENSMUST00000210121 Dock1 protein_coding Interval_10503 chr1 171360230 171362005 + 0 NA promoter-TSS (ENSMUSG00000045259.4) protein_coding-promoter-TSS (ENSMUSG00000045259.4) -319 ENSMUSG00000045259.4 ENSMUSG00000045259 ENSMUST00000061878 Klhdc9 protein_coding Interval_169119 chr9 92874273 92874871 + 0 NA Intergenic Intergenic -21260 ENSMUSG00000099823.1 ENSMUSG00000099823 ENSMUST00000187280 Gm28054 lincRNA Interval_37004 chr12 56268436 56268829 + 0 NA Intergenic Intergenic -1428 ENSMUSG00000088389.1 ENSMUSG00000088389 ENSMUST00000157764 Gm24685 misc_RNA Interval_88063 chr19 58697815 58698205 + 0 NA promoter-TSS (ENSMUSG00000101088.6) transcribed_unprocessed_pseudogene-promoter-TSS (ENSMUSG00000101088.6) -1072 ENSMUSG00000101088.6 ENSMUSG00000101088 ENSMUST00000189764 1810018F18Rik transcribed_unprocessed_pseudogene Interval_131771 chr5 139774777 139776157 + 0 NA exon (ENSMUSG00000029547.10, exon 1 of 47) protein_coding-exon (ENSMUSG00000029547.10, exon 1 of 47) 171 ENSMUSG00000029547.10 ENSMUSG00000029547 ENSMUST00000196864 Ints1 protein_coding Interval_75501 chr17 67525989 67526399 + 0 NA Intergenic Intergenic -25413 ENSMUSG00000087829.1 ENSMUSG00000087829 ENSMUST00000157204 Gm22277 misc_RNA Interval_131520 chr5 137701377 137701680 + 0 NA Intergenic Intergenic -10777 ENSMUSG00000079163.3 ENSMUSG00000079163 ENSMUST00000126693 Gm15498 lincRNA Interval_102288 chr3 20662858 20663081 + 0 NA Intergenic Intergenic 121094 ENSMUSG00000103460.1 ENSMUSG00000103460 ENSMUST00000192492 Gm18491 processed_pseudogene Interval_113683 chr4 57567591 57568806 + 0 NA promoter-TSS (ENSMUSG00000089945.13) protein_coding-promoter-TSS (ENSMUSG00000089945.13) -122 ENSMUSG00000090053.9 ENSMUSG00000090053 ENSMUST00000131201 Pakap protein_coding Interval_55500 chr14 89285123 89285381 + 0 NA Intergenic Intergenic -65773 ENSMUSG00000102164.1 ENSMUSG00000102164 ENSMUST00000192706 Gm36946 TEC Interval_170315 chr9 106876092 106876937 + 0 NA intron (ENSMUSG00000040325.16, intron 1 of 1) protein_coding-intron (ENSMUSG00000040325.16, intron 22 of 22) 5840 ENSMUSG00000103835.1 ENSMUSG00000103835 ENSMUST00000193626 Gm37612 sense_intronic Interval_35368 chr12 21111161 21112759 + 0 NA promoter-TSS (ENSMUSG00000052632.16) protein_coding-promoter-TSS (ENSMUSG00000052632.16) 69001 ENSMUSG00000092229.3 ENSMUSG00000092229 ENSMUST00000174304 Gm5977 transcribed_unprocessed_pseudogene Interval_56943 chr14 123820999 123821790 + 0 NA intron (ENSMUSG00000032925.16, intron 2 of 10) protein_coding-intron (ENSMUSG00000032925.16, intron 2 of 10) -112324 ENSMUSG00000077481.1 ENSMUSG00000077481 ENSMUST00000104293 Gm25272 snoRNA Interval_13023 chr10 9529124 9530282 + 0 NA Intergenic Intergenic 5978 ENSMUSG00000053980.4 ENSMUSG00000053980 ENSMUST00000066742 Gm9930 TEC Interval_51845 chr14 32800837 32801802 + 0 NA intron (ENSMUSG00000041707.8, intron 1 of 1) protein_coding-intron (ENSMUSG00000041707.8, intron 1 of 4) -6915 ENSMUSG00000041707.8 ENSMUSG00000041707 ENSMUST00000228955 Tmem273 protein_coding Interval_102762 chr3 30859638 30860086 + 0 NA intron (ENSMUSG00000037661.14, intron 1 of 3) protein_coding-intron (ENSMUSG00000037661.14, intron 1 of 3) 3869 ENSMUSG00000037661.14 ENSMUSG00000037661 ENSMUST00000147697 Gpr160 protein_coding Interval_169762 chr9 101034097 101035112 + 0 NA intron (ENSMUSG00000032527.13, intron 1 of 3) protein_coding-intron (ENSMUSG00000032527.13, intron 1 of 14) 277 ENSMUSG00000032527.13 ENSMUSG00000032527 ENSMUST00000189498 Pccb protein_coding Interval_105371 chr3 85601638 85602242 + 0 NA exon (ENSMUSG00000028085.12, exon 3 of 13) protein_coding-exon (ENSMUSG00000028085.12, exon 3 of 13) 27808 ENSMUSG00000028085.12 ENSMUSG00000028085 ENSMUST00000029726 Gatb protein_coding Interval_16147 chr10 61044793 61045723 + 0 NA Intergenic Intergenic -2447 ENSMUSG00000093489.1 ENSMUSG00000093489 ENSMUST00000177065 Gm20625 lincRNA Interval_27963 chr11 71603822 71604032 + 0 NA Intergenic Intergenic -30389 ENSMUSG00000111450.1 ENSMUSG00000111450 ENSMUST00000215428 Gm33351 lincRNA Interval_7382 chr1 130737393 130738256 + 0 NA intron (ENSMUSG00000042510.7, intron 2 of 3) protein_coding-intron (ENSMUSG00000042510.7, intron 2 of 3) -2448 ENSMUSG00000042510.7 ENSMUSG00000042510 ENSMUST00000190859 AA986860 protein_coding Interval_116534 chr4 115094021 115094762 + 0 NA TTS (ENSMUSG00000028716.15) protein_coding-TTS (ENSMUSG00000028716.15) 5683 ENSMUSG00000028716.15 ENSMUSG00000028716 ENSMUST00000146578 Pdzk1ip1 protein_coding Interval_161909 chr8 123693134 123693609 + 0 NA intron (ENSMUSG00000092329.1, intron 1 of 15) protein_coding-intron (ENSMUSG00000092329.1, intron 1 of 15) 39442 ENSMUSG00000039960.5 ENSMUSG00000039960 ENSMUST00000045487 Rhou protein_coding Interval_161162 chr8 117930818 117931591 + 0 NA Intergenic Intergenic 129142 ENSMUSG00000074065.4 ENSMUSG00000074065 ENSMUST00000098368 Gm10617 pseudogene Interval_96590 chr2 125984898 125985314 + 0 NA TTS (ENSMUSG00000027207.15) protein_coding-TTS (ENSMUSG00000027207.15) -49552 ENSMUSG00000027208.14 ENSMUSG00000027208 ENSMUST00000110442 Fgf7 protein_coding Interval_57257 chr15 8175524 8175950 + 0 NA intron (ENSMUSG00000039801.7, intron 5 of 52) protein_coding-intron (ENSMUSG00000039801.7, intron 5 of 52) 24654 ENSMUSG00000022142.8 ENSMUSG00000022142 ENSMUST00000230647 Nup155 protein_coding Interval_116 GL456239.1 24454 25369 + 0 NA NA NA NA NA Interval_52638 chr14 48169971 48170420 + 0 NA intron (ENSMUSG00000021846.9, intron 1 of 5) protein_coding-intron (ENSMUSG00000021846.9, intron 2 of 5) -14811 ENSMUSG00000021846.9 ENSMUSG00000021846 ENSMUST00000081029 Peli2 protein_coding Interval_50209 chr14 9859799 9860774 + 0 NA intron (ENSMUSG00000060579.13, intron 3 of 5) protein_coding-intron (ENSMUSG00000060579.13, intron 7 of 9) -2816 ENSMUSG00000089795.1 ENSMUSG00000089795 ENSMUST00000162465 Hmgb3-ps processed_pseudogene Interval_117942 chr4 127224089 127225108 + 0 NA intron (ENSMUSG00000042388.14, intron 8 of 11) protein_coding-intron (ENSMUSG00000042388.14, intron 8 of 11) -19186 ENSMUSG00000042380.8 ENSMUSG00000042380 ENSMUST00000142029 Smim12 protein_coding Interval_52175 chr14 38185174 38186354 + 0 NA Intergenic Intergenic 111653 ENSMUSG00000114450.1 ENSMUSG00000114450 ENSMUST00000224927 Gm18523 processed_pseudogene Interval_55084 chr14 77838683 77839075 + 0 NA intron (ENSMUSG00000022013.4, intron 1 of 2) protein_coding-intron (ENSMUSG00000022013.4, intron 4 of 4) 1330 ENSMUSG00000022013.4 ENSMUSG00000022013 ENSMUST00000022590 Dnajc15 protein_coding Interval_28050 chr11 72469241 72469466 + 0 NA intron (ENSMUSG00000040447.15, intron 2 of 3) protein_coding-intron (ENSMUSG00000040447.15, intron 2 of 12) -13003 ENSMUSG00000040447.15 ENSMUSG00000040447 ENSMUST00000147418 Spns2 protein_coding Interval_68203 chr16 68017792 68018046 + 0 NA Intergenic Intergenic -10558 ENSMUSG00000116666.1 ENSMUSG00000116666 ENSMUST00000232463 Gm49649 processed_pseudogene Interval_131713 chr5 139452923 139453302 + 0 NA intron (ENSMUSG00000053553.11, intron 1 of 2) protein_coding-intron (ENSMUSG00000053553.11, intron 2 of 4) 7415 ENSMUSG00000053553.11 ENSMUSG00000053553 ENSMUST00000197512 3110082I17Rik protein_coding Interval_54062 chr14 64876454 64876828 + 0 NA intron (ENSMUSG00000021972.14, intron 3 of 9) protein_coding-intron (ENSMUSG00000021972.14, intron 4 of 10) 26625 ENSMUSG00000021972.14 ENSMUSG00000021972 ENSMUST00000176657 Hmbox1 protein_coding Interval_43272 chr13 28425098 28425318 + 0 NA Intergenic Intergenic -5345 ENSMUSG00000113216.1 ENSMUSG00000113216 ENSMUST00000221933 Gm40841 lincRNA Interval_19607 chr10 105557277 105557609 + 0 NA intron (ENSMUSG00000036019.8, intron 1 of 8) protein_coding-intron (ENSMUSG00000036019.8, intron 1 of 11) -16510 ENSMUSG00000085282.8 ENSMUSG00000085282 ENSMUST00000145794 Gm15663 processed_transcript Interval_172388 chrX 17094234 17094511 + 0 NA Intergenic Intergenic -157690 ENSMUSG00000081858.1 ENSMUSG00000081858 ENSMUST00000121680 Gm14514 processed_pseudogene Interval_167652 chr9 71566524 71568222 + 0 NA intron (ENSMUSG00000041361.13, intron 2 of 3) protein_coding-intron (ENSMUSG00000041361.13, intron 2 of 12) 12512 ENSMUSG00000041361.13 ENSMUSG00000041361 ENSMUST00000166112 Myzap protein_coding Interval_56963 chr14 124203977 124204674 + 0 NA intron (ENSMUSG00000025551.13, intron 1 of 4) protein_coding-intron (ENSMUSG00000025551.13, intron 1 of 4) -194366 ENSMUSG00000115472.1 ENSMUSG00000115472 ENSMUST00000228023 Gm49070 processed_pseudogene Interval_115593 chr4 101198613 101198878 + 0 NA intron (ENSMUSG00000028530.14, intron 1 of 5) protein_coding-intron (ENSMUSG00000028530.14, intron 1 of 24) 11842 ENSMUSG00000082928.1 ENSMUSG00000082928 ENSMUST00000122052 Gm12785 processed_pseudogene Interval_167633 chr9 71411292 71411653 + 0 NA Intergenic Intergenic 74433 ENSMUSG00000032199.13 ENSMUSG00000032199 ENSMUST00000233263 Polr2m protein_coding Interval_8812 chr1 151343739 151345459 + 0 NA promoter-TSS (ENSMUSG00000023150.14) protein_coding-promoter-TSS (ENSMUSG00000023150.14) 137 ENSMUSG00000100954.4 ENSMUSG00000100954 ENSMUST00000206952 Gm10138 antisense Interval_145443 chr7 34781357 34782207 + 0 NA intron (ENSMUSG00000060402.8, intron 1 of 2) protein_coding-intron (ENSMUSG00000060402.8, intron 1 of 3) -27970 ENSMUSG00000060402.8 ENSMUSG00000060402 ENSMUST00000205390 Chst8 protein_coding Interval_114975 chr4 87954783 87955761 + 0 NA intron (ENSMUSG00000028496.17, intron 2 of 4) protein_coding-intron (ENSMUSG00000028496.17, intron 2 of 10) -78229 ENSMUSG00000084809.1 ENSMUSG00000084809 ENSMUST00000130576 Gm12631 antisense Interval_28362 chr11 75376441 75378038 + 0 NA intron (ENSMUSG00000018809.2, intron 2 of 2) protein_coding-intron (ENSMUSG00000018809.2, intron 2 of 10) 28744 ENSMUSG00000018809.2 ENSMUSG00000018809 ENSMUST00000135774 Smyd4 protein_coding Interval_85461 chr19 26731577 26732759 + 0 NA intron (ENSMUSG00000024921.17, intron 1 of 5) protein_coding-intron (ENSMUSG00000024921.17, intron 27 of 32) -16234 ENSMUSG00000024921.17 ENSMUSG00000024921 ENSMUST00000208984 Smarca2 protein_coding Interval_10007 chr1 164958272 164958647 + 0 NA Intergenic Intergenic -2464 ENSMUSG00000101189.1 ENSMUSG00000101189 ENSMUST00000187517 1700029M03Rik lincRNA Interval_59299 chr15 50899081 50901310 + 0 NA intron (ENSMUSG00000115339.1, intron 1 of 3) lincRNA-intron (ENSMUSG00000115339.1, intron 1 of 3) 2556 ENSMUSG00000115339.1 ENSMUSG00000115339 ENSMUST00000226611 Gm48913 lincRNA Interval_105198 chr3 83778166 83778433 + 0 NA intron (ENSMUSG00000097250.1, intron 1 of 2) antisense-intron (ENSMUSG00000097250.1, intron 1 of 2) 11446 ENSMUSG00000027996.13 ENSMUSG00000027996 ENSMUST00000154794 Sfrp2 protein_coding Interval_91695 chr2 48181712 48182302 + 0 NA intron (ENSMUSG00000086353.1, intron 3 of 5) lincRNA-intron (ENSMUSG00000086353.1, intron 3 of 5) 41861 ENSMUSG00000082278.1 ENSMUSG00000082278 ENSMUST00000122057 Gm13471 processed_pseudogene Interval_150477 chr7 111014611 111015392 + 0 NA Intergenic Intergenic -32797 ENSMUSG00000005611.15 ENSMUSG00000005611 ENSMUST00000154466 Mrvi1 protein_coding Interval_135395 chr6 38976077 38976740 + 0 NA intron (ENSMUSG00000106737.1, intron 1 of 4) protein_coding-intron (ENSMUSG00000029925.13, intron 3 of 12) 4543 ENSMUSG00000029925.13 ENSMUSG00000029925 ENSMUST00000161360 Tbxas1 protein_coding Interval_16795 chr10 68210214 68210505 + 0 NA intron (ENSMUSG00000019947.10, intron 3 of 9) protein_coding-intron (ENSMUSG00000019947.10, intron 3 of 10) 68381 ENSMUSG00000019947.10 ENSMUSG00000019947 ENSMUST00000218425 Arid5b protein_coding Interval_79999 chr18 36559436 36561410 + 0 NA promoter-TSS (ENSMUSG00000024483.19) protein_coding-promoter-TSS (ENSMUSG00000024483.19) 32272 ENSMUSG00000024485.16 ENSMUSG00000024485 ENSMUST00000235382 Slc4a9 protein_coding Interval_63633 chr15 102455730 102456456 + 0 NA promoter-TSS (ENSMUSG00000089168.1) snRNA-promoter-TSS (ENSMUSG00000089168.1) -470 ENSMUSG00000089168.1 ENSMUSG00000089168 ENSMUST00000158543 Gm24128 snRNA Interval_24947 chr11 41847318 41847568 + 0 NA intron (ENSMUSG00000087306.7, intron 3 of 8) processed_transcript-intron (ENSMUSG00000087306.7, intron 3 of 8) -57624 ENSMUSG00000084293.1 ENSMUSG00000084293 ENSMUST00000119666 Gm12143 processed_pseudogene Interval_160843 chr8 113597891 113599402 + 0 NA Intergenic Intergenic -36941 ENSMUSG00000078908.10 ENSMUSG00000078908 ENSMUST00000035777 Mon1b protein_coding Interval_93745 chr2 76470171 76470663 + 0 NA intron (ENSMUSG00000042359.18, intron 1 of 24) protein_coding-intron (ENSMUSG00000042359.18, intron 1 of 26) -8802 ENSMUSG00000092825.1 ENSMUSG00000092825 ENSMUST00000175084 Gm23164 miRNA Interval_57921 chr15 25428470 25429380 + 0 NA intron (ENSMUSG00000115729.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000115850.1, intron 1 of 1) 13867 ENSMUSG00000115729.1 ENSMUSG00000115729 ENSMUST00000228099 Gm48957 processed_transcript Interval_77538 chr17 91092566 91093475 + 0 NA promoter-TSS (ENSMUSG00000024109.18) protein_coding-promoter-TSS (ENSMUSG00000024109.18) 4527 ENSMUSG00000071033.1 ENSMUSG00000071033 ENSMUST00000095183 Gm10308 3prime_overlapping_ncRNA Interval_44284 chr13 43338583 43339450 + 0 NA Intergenic Intergenic -26490 ENSMUSG00000054021.6 ENSMUSG00000054021 ENSMUST00000222106 Sirt5 protein_coding Interval_51048 chr14 21784467 21785401 + 0 NA intron (ENSMUSG00000021770.11, intron 4 of 5) protein_coding-intron (ENSMUSG00000021770.11, intron 4 of 5) -27777 ENSMUSG00000065836.1 ENSMUSG00000065836 ENSMUST00000083902 Gm23502 snRNA Interval_148385 chr7 80934479 80936206 + 0 NA intron (ENSMUSG00000025724.12, intron 1 of 6) protein_coding-intron (ENSMUSG00000025724.12, intron 1 of 5) -19012 ENSMUSG00000025724.12 ENSMUSG00000025724 ENSMUST00000136556 Sec11a protein_coding Interval_173737 chrX 103311108 103313018 + 0 NA promoter-TSS (ENSMUSG00000031325.15) transcribed_unitary_pseudogene-promoter-TSS (ENSMUSG00000031325.15) -7048 ENSMUSG00000083711.1 ENSMUSG00000083711 ENSMUST00000119038 Gm3931 processed_pseudogene Interval_66247 chr16 32622162 32623148 + 0 NA intron (ENSMUSG00000022797.16, intron 2 of 3) protein_coding-intron (ENSMUSG00000022797.16, intron 11 of 18) 2266 ENSMUSG00000022797.16 ENSMUSG00000022797 ENSMUST00000128285 Tfrc protein_coding Interval_42114 chr13 8943254 8943613 + 0 NA intron (ENSMUSG00000021148.11, intron 2 of 4) protein_coding-intron (ENSMUSG00000021148.11, intron 1 of 3) -1612 ENSMUSG00000077484.1 ENSMUSG00000077484 ENSMUST00000104296 Gm25274 snoRNA Interval_116608 chr4 116028930 116029151 + 0 NA Intergenic Intergenic 24340 ENSMUSG00000028706.14 ENSMUSG00000028706 ENSMUST00000151720 Nsun4 protein_coding Interval_76115 chr17 75103444 75104716 + 0 NA intron (ENSMUSG00000001870.16, intron 3 of 34) protein_coding-intron (ENSMUSG00000001870.16, intron 3 of 33) -61127 ENSMUSG00000084025.1 ENSMUSG00000084025 ENSMUST00000120159 Gm6276 processed_pseudogene Interval_54952 chr14 76451741 76452244 + 0 NA intron (ENSMUSG00000022010.19, intron 3 of 4) protein_coding-intron (ENSMUSG00000022010.19, intron 1 of 2) 33164 ENSMUSG00000022010.19 ENSMUSG00000022010 ENSMUST00000133224 Tsc22d1 protein_coding Interval_25176 chr11 44777334 44778051 + 0 NA intron (ENSMUSG00000057098.14, intron 6 of 15) protein_coding-intron (ENSMUSG00000057098.14, intron 6 of 15) -115016 ENSMUSG00000085784.1 ENSMUSG00000085784 ENSMUST00000130493 Gm12158 antisense Interval_13341 chr10 15814110 15814748 + 0 NA Intergenic Intergenic 22652 ENSMUSG00000112227.1 ENSMUSG00000112227 ENSMUST00000218833 C330004P14Rik lincRNA Interval_127093 chr5 100226300 100226844 + 0 NA intron (ENSMUSG00000085915.1, intron 3 of 4) unprocessed_pseudogene-intron (ENSMUSG00000085915.1, intron 3 of 4) 15864 ENSMUSG00000100157.6 ENSMUSG00000100157 ENSMUST00000188902 2310034O05Rik lincRNA Interval_25874 chr11 52286217 52287028 + 0 NA TTS (ENSMUSG00000086395.1) antisense-TTS (ENSMUSG00000086395.1) 10567 ENSMUSG00000086395.1 ENSMUSG00000086395 ENSMUST00000150973 A630014C17Rik antisense Interval_120711 chr4 150229884 150230192 + 0 NA Intergenic Intergenic 2003 ENSMUSG00000082140.1 ENSMUSG00000082140 ENSMUST00000117930 Gm13094 processed_pseudogene Interval_64978 chr16 17646039 17647096 + 0 NA promoter-TSS (ENSMUSG00000041617.10) protein_coding-promoter-TSS (ENSMUSG00000041617.10) -133 ENSMUSG00000041617.10 ENSMUSG00000041617 ENSMUST00000183279 Ccdc74a protein_coding Interval_122729 chr5 24929596 24930160 + 0 NA intron (ENSMUSG00000028944.14, intron 2 of 13) protein_coding-intron (ENSMUSG00000028944.14, intron 4 of 15) -21369 ENSMUSG00000028944.14 ENSMUSG00000028944 ENSMUST00000148531 Prkag2 protein_coding Interval_725 chr1 10165012 10165192 + 0 NA intron (ENSMUSG00000067851.11, intron 21 of 37) protein_coding-intron (ENSMUSG00000067851.11, intron 21 of 37) -1437 ENSMUSG00000088153.1 ENSMUSG00000088153 ENSMUST00000157528 Gm26348 misc_RNA Interval_82162 chr18 68194585 68195556 + 0 NA intron (ENSMUSG00000024544.9, intron 3 of 5) protein_coding-intron (ENSMUSG00000024544.9, intron 3 of 5) -26103 ENSMUSG00000118306.1 ENSMUSG00000118306 ENSMUST00000237336 Gm18149 processed_pseudogene Interval_57112 chr15 6607987 6608430 + 0 NA intron (ENSMUSG00000089647.2, intron 6 of 6) protein_coding-intron (ENSMUSG00000022148.16, intron 1 of 17) -1326 ENSMUSG00000089647.2 ENSMUSG00000089647 ENSMUST00000228703 Gm2245 antisense Interval_7324 chr1 128999695 129000163 + 0 NA Intergenic Intergenic -113910 ENSMUSG00000064737.1 ENSMUSG00000064737 ENSMUST00000082803 Gm23056 snRNA Interval_51966 chr14 34323324 34324424 + 0 NA intron (ENSMUSG00000021794.16, intron 3 of 12) protein_coding-intron (ENSMUSG00000021794.16, intron 3 of 12) -10392 ENSMUSG00000021794.16 ENSMUSG00000021794 ENSMUST00000161593 Glud1 protein_coding Interval_59159 chr15 45576347 45576699 + 0 NA Intergenic Intergenic -386003 ENSMUSG00000115549.1 ENSMUSG00000115549 ENSMUST00000228018 Gm2203 processed_pseudogene Interval_139210 chr6 97217186 97217523 + 0 NA intron (ENSMUSG00000035199.6, intron 1 of 2) protein_coding-intron (ENSMUSG00000035199.6, intron 1 of 2) 6665 ENSMUSG00000035199.6 ENSMUSG00000035199 ENSMUST00000044681 Arl6ip5 protein_coding Interval_141679 chr6 133205801 133206587 + 0 NA Intergenic Intergenic 9554 ENSMUSG00000094750.1 ENSMUSG00000094750 ENSMUST00000179732 Gm25019 miRNA Interval_103474 chr3 42225018 42225252 + 0 NA Intergenic Intergenic 61270 ENSMUSG00000102610.1 ENSMUSG00000102610 ENSMUST00000191840 Gm37846 TEC Interval_45703 chr13 57067406 57068030 + 0 NA Intergenic Intergenic -136770 ENSMUSG00000077279.1 ENSMUSG00000077279 ENSMUST00000104091 Gm22777 snoRNA Interval_148067 chr7 78974894 78975180 + 0 NA Intergenic Intergenic -51151 ENSMUSG00000108670.1 ENSMUSG00000108670 ENSMUST00000206812 Gm44815 TEC Interval_111016 chr4 11223572 11225597 + 0 NA intron (ENSMUSG00000040738.10, intron 7 of 19) protein_coding-intron (ENSMUSG00000040738.10, intron 15 of 27) 11384 ENSMUSG00000040738.10 ENSMUSG00000040738 ENSMUST00000147372 Ints8 protein_coding Interval_26111 chr11 54354656 54356056 + 0 NA intron (ENSMUSG00000020333.17, intron 9 of 9) protein_coding-intron (ENSMUSG00000020333.17, intron 19 of 19) -1926 ENSMUSG00000085888.7 ENSMUSG00000085888 ENSMUST00000127107 Gm12224 antisense Interval_10558 chr1 171825515 171826454 + 0 NA Intergenic Intergenic -13713 ENSMUSG00000038147.13 ENSMUSG00000038147 ENSMUST00000042302 Cd84 protein_coding Interval_139258 chr6 97607153 97608213 + 0 NA intron (ENSMUSG00000030064.16, intron 1 of 7) protein_coding-intron (ENSMUSG00000030064.16, intron 1 of 23) -26591 ENSMUSG00000108093.1 ENSMUSG00000108093 ENSMUST00000204031 Gm44102 TEC Interval_136860 chr6 61618236 61618700 + 0 NA intron (ENSMUSG00000039578.17, intron 3 of 4) protein_coding-intron (ENSMUSG00000039578.17, intron 5 of 9) 217861 ENSMUSG00000107757.1 ENSMUSG00000107757 ENSMUST00000204456 Gm43898 processed_pseudogene Interval_83131 chr18 81865195 81866360 + 0 NA Intergenic Intergenic -15761 ENSMUSG00000117892.1 ENSMUSG00000117892 ENSMUST00000237663 Gm30454 lincRNA Interval_120864 chr4 151139221 151141853 + 0 NA promoter-TSS (ENSMUSG00000014592.21) protein_coding-promoter-TSS (ENSMUSG00000014592.21) 50967 ENSMUSG00000078491.2 ENSMUSG00000078491 ENSMUST00000105667 Gm13090 protein_coding Interval_152398 chr7 132758191 132758658 + 0 NA TTS (ENSMUSG00000030956.15) protein_coding-TTS (ENSMUSG00000030956.15) 44326 ENSMUSG00000030956.15 ENSMUSG00000030956 ENSMUST00000148303 Fam53b protein_coding Interval_142632 chr6 144426788 144429664 + 0 NA intron (ENSMUSG00000041540.16, intron 4 of 6) protein_coding-intron (ENSMUSG00000041540.16, intron 4 of 13) -52999 ENSMUSG00000087157.1 ENSMUSG00000087157 ENSMUST00000156443 Sox5os2 antisense Interval_168959 chr9 89704236 89705358 + 0 NA promoter-TSS (ENSMUSG00000032353.9) protein_coding-promoter-TSS (ENSMUSG00000032353.9) 26 ENSMUSG00000032353.9 ENSMUSG00000032353 ENSMUST00000188808 Tmed3 protein_coding Interval_134816 chr6 31809678 31809869 + 0 NA intron (ENSMUSG00000087379.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000087379.1, intron 1 of 2) 23098 ENSMUSG00000087379.1 ENSMUSG00000087379 ENSMUST00000153328 Gm13849 lincRNA Interval_8478 chr1 139801117 139801779 + 0 NA Intergenic Intergenic 14465 ENSMUSG00000095393.1 ENSMUSG00000095393 ENSMUST00000122621 Gm25619 snRNA Interval_95943 chr2 118583564 118583784 + 0 NA Intergenic Intergenic -10405 ENSMUSG00000080747.1 ENSMUSG00000080747 ENSMUST00000119095 Gm14016 processed_pseudogene Interval_154607 chr8 22035366 22035645 + 0 NA intron (ENSMUSG00000006567.11, intron 1 of 21) protein_coding-intron (ENSMUSG00000006567.11, intron 1 of 20) 24514 ENSMUSG00000006567.11 ENSMUSG00000006567 ENSMUST00000110738 Atp7b protein_coding Interval_66316 chr16 33107057 33107347 + 0 NA intron (ENSMUSG00000022802.2, intron 14 of 16) protein_coding-intron (ENSMUSG00000022802.2, intron 14 of 16) 1399 ENSMUSG00000078489.2 ENSMUSG00000078489 ENSMUST00000105610 Gm17106 processed_transcript Interval_52484 chr14 46898598 46899438 + 0 NA intron (ENSMUSG00000021838.17, intron 3 of 12) protein_coding-intron (ENSMUSG00000021838.17, intron 2 of 12) 5498 ENSMUSG00000114996.1 ENSMUSG00000114996 ENSMUST00000228844 Gm48958 TEC Interval_88988 chr2 14047260 14047477 + 0 NA intron (ENSMUSG00000063275.15, intron 1 of 7) protein_coding-intron (ENSMUSG00000063275.15, intron 2 of 7) -6945 ENSMUSG00000103926.1 ENSMUSG00000103926 ENSMUST00000195416 Gm37894 TEC Interval_56743 chr14 121804141 121804941 + 0 NA Intergenic Intergenic -26473 ENSMUSG00000115443.1 ENSMUSG00000115443 ENSMUST00000228932 Gm9395 processed_pseudogene Interval_2019 chr1 35931064 35931609 + 0 NA Intergenic Intergenic -27583 ENSMUSG00000103096.1 ENSMUSG00000103096 ENSMUST00000191763 Gm8022 processed_pseudogene Interval_65597 chr16 23927223 23927663 + 0 NA exon (ENSMUSG00000047531.9, exon 2 of 2) protein_coding-exon (ENSMUSG00000047531.9, exon 2 of 2) 4951 ENSMUSG00000047531.9 ENSMUSG00000047531 ENSMUST00000231038 Rtp2 protein_coding Interval_171867 chr9 121876995 121877470 + 0 NA exon (ENSMUSG00000111465.1, exon 4 of 4) lincRNA-exon (ENSMUSG00000111465.1, exon 4 of 4) 7736 ENSMUSG00000111465.1 ENSMUSG00000111465 ENSMUST00000213591 Gm47113 lincRNA Interval_96464 chr2 124055939 124056139 + 0 NA Intergenic Intergenic 73917 ENSMUSG00000085496.1 ENSMUSG00000085496 ENSMUST00000129584 4930517E11Rik lincRNA Interval_69083 chr16 90510736 90511106 + 0 NA Intergenic Intergenic 39688 ENSMUSG00000116753.1 ENSMUSG00000116753 ENSMUST00000232652 Gm36001 lincRNA Interval_110979 chr4 11005075 11005311 + 0 NA intron (ENSMUSG00000049969.3, intron 1 of 1) protein_coding-intron (ENSMUSG00000049969.3, intron 1 of 1) 2734 ENSMUSG00000049969.3 ENSMUSG00000049969 ENSMUST00000137891 Plekhf2 protein_coding Interval_106218 chr3 94731501 94732341 + 0 NA intron (ENSMUSG00000081355.1, intron 3 of 5) unprocessed_pseudogene-intron (ENSMUSG00000081355.1, intron 3 of 5) -5422 ENSMUSG00000104881.1 ENSMUSG00000104881 ENSMUST00000195994 Gm43711 processed_pseudogene Interval_152966 chr7 140092849 140093267 + 0 NA promoter-TSS (ENSMUSG00000025467.8) protein_coding-promoter-TSS (ENSMUSG00000025467.8) -337 ENSMUSG00000025467.8 ENSMUSG00000025467 ENSMUST00000026540 Prap1 protein_coding Interval_88775 chr2 10542798 10543019 + 0 NA intron (ENSMUSG00000061186.15, intron 13 of 22) protein_coding-intron (ENSMUSG00000061186.15, intron 12 of 22) 24753 ENSMUSG00000080594.1 ENSMUSG00000080594 ENSMUST00000116944 Mir669h miRNA Interval_109712 chr3 146220412 146221652 + 0 NA promoter-TSS (ENSMUSG00000036832.5) protein_coding-promoter-TSS (ENSMUSG00000036832.5) 69 ENSMUSG00000036832.5 ENSMUSG00000036832 ENSMUST00000039164 Lpar3 protein_coding Interval_66121 chr16 31754424 31754783 + 0 NA exon (ENSMUSG00000022770.17, exon 1 of 23) protein_coding-exon (ENSMUSG00000022770.17, exon 1 of 23) -6363 ENSMUSG00000116626.1 ENSMUSG00000116626 ENSMUST00000232512 Gm49705 TEC Interval_60074 chr15 64564831 64565182 + 0 NA Intergenic Intergenic 68502 ENSMUSG00000115328.1 ENSMUSG00000115328 ENSMUST00000227641 Gm30691 lincRNA Interval_99615 chr2 163601944 163602925 + 0 NA promoter-TSS (ENSMUSG00000017679.16) protein_coding-promoter-TSS (ENSMUSG00000017679.16) 120 ENSMUSG00000017679.16 ENSMUSG00000017679 ENSMUST00000132904 Ttpal protein_coding Interval_39780 chr12 98208648 98208936 + 0 NA exon (ENSMUSG00000021003.10, exon 15 of 17) protein_coding-exon (ENSMUSG00000021003.10, exon 15 of 17) 7736 ENSMUSG00000021003.10 ENSMUSG00000021003 ENSMUST00000221322 Galc protein_coding Interval_123326 chr5 31462565 31463254 + 0 NA TTS (ENSMUSG00000107120.1) TEC-TTS (ENSMUSG00000107120.1) 1887 ENSMUSG00000107120.1 ENSMUSG00000107120 ENSMUST00000202437 Gm43059 TEC Interval_89944 chr2 26627961 26629609 + 0 NA intron (ENSMUSG00000036186.5, intron 1 of 1) protein_coding-intron (ENSMUSG00000036186.5, intron 1 of 4) 291 ENSMUSG00000036186.5 ENSMUSG00000036186 ENSMUST00000144449 Dipk1b protein_coding Interval_147907 chr7 75405417 75405645 + 0 NA Intergenic Intergenic 15604 ENSMUSG00000108590.1 ENSMUSG00000108590 ENSMUST00000206460 Gm44962 processed_pseudogene Interval_141246 chr6 126497318 126498379 + 0 NA Intergenic Intergenic 37564 ENSMUSG00000045534.4 ENSMUSG00000045534 ENSMUST00000060972 Kcna5 protein_coding Interval_48335 chr13 98283017 98283796 + 0 NA intron (ENSMUSG00000096330.8, intron 1 of 5) protein_coding-intron (ENSMUSG00000096330.8, intron 1 of 3) -19098 ENSMUSG00000096330.8 ENSMUSG00000096330 ENSMUST00000186911 Gm21976 protein_coding Interval_71814 chr17 26268724 26269944 + 0 NA promoter-TSS (ENSMUSG00000089764.2) processed_pseudogene-promoter-TSS (ENSMUSG00000089764.2) -3 ENSMUSG00000089764.2 ENSMUSG00000089764 ENSMUST00000162696 Gm16580 processed_pseudogene Interval_53584 chr14 59592961 59593207 + 0 NA intron (ENSMUSG00000021982.14, intron 2 of 10) protein_coding-intron (ENSMUSG00000021982.14, intron 2 of 9) 4855 ENSMUSG00000021982.14 ENSMUSG00000021982 ENSMUST00000223842 Cdadc1 protein_coding Interval_28063 chr11 72576128 72577199 + 0 NA Intergenic Intergenic -3333 ENSMUSG00000081675.1 ENSMUSG00000081675 ENSMUST00000120676 Gm12712 processed_pseudogene Interval_17216 chr10 75041943 75042338 + 0 NA intron (ENSMUSG00000020175.15, intron 3 of 10) protein_coding-intron (ENSMUSG00000020175.15, intron 3 of 4) 5051 ENSMUSG00000020175.15 ENSMUSG00000020175 ENSMUST00000151432 Rab36 protein_coding Interval_114604 chr4 83051880 83052724 + 0 NA promoter-TSS (ENSMUSG00000059049.14) protein_coding-promoter-TSS (ENSMUSG00000059049.14) -135 ENSMUSG00000059049.14 ENSMUSG00000059049 ENSMUST00000131102 Frem1 protein_coding Interval_144190 chr7 19871017 19872535 + 0 NA promoter-TSS (ENSMUSG00000109214.1) lincRNA-promoter-TSS (ENSMUSG00000109214.1) -338 ENSMUSG00000109214.1 ENSMUSG00000109214 ENSMUST00000207269 Gm44659 lincRNA Interval_63558 chr15 102034060 102034263 + 0 NA Intergenic Intergenic 5981 ENSMUSG00000023043.7 ENSMUSG00000023043 ENSMUST00000023803 Krt18 protein_coding Interval_169201 chr9 95468889 95470099 + 0 NA intron (ENSMUSG00000032407.14, intron 24 of 27) protein_coding-intron (ENSMUSG00000032407.14, intron 23 of 26) 42391 ENSMUSG00000032407.14 ENSMUSG00000032407 ENSMUST00000188017 U2surp protein_coding Interval_172416 chrX 18399110 18400383 + 0 NA Intergenic Intergenic 55948 ENSMUSG00000081271.1 ENSMUSG00000081271 ENSMUST00000120179 Gm14883 processed_pseudogene Interval_120479 chr4 148874051 148874674 + 0 NA intron (ENSMUSG00000028977.17, intron 2 of 20) protein_coding-intron (ENSMUSG00000028977.17, intron 2 of 15) 39962 ENSMUSG00000086766.1 ENSMUSG00000086766 ENSMUST00000151967 Gm15969 antisense Interval_112354 chr4 40785698 40786439 + 0 NA Intergenic Intergenic -10504 ENSMUSG00000056412.6 ENSMUSG00000056412 ENSMUST00000121600 Psenen-ps processed_pseudogene Interval_91234 chr2 36210391 36211086 + 0 NA promoter-TSS (ENSMUSG00000085141.1) processed_transcript-promoter-TSS (ENSMUSG00000085141.1) -6039 ENSMUSG00000087187.1 ENSMUSG00000087187 ENSMUST00000129699 Gm13431 lincRNA Interval_47541 chr13 87304480 87304800 + 0 NA Intergenic Intergenic -3086 ENSMUSG00000114750.1 ENSMUSG00000114750 ENSMUST00000225883 Gm18265 processed_pseudogene Interval_98158 chr2 148884823 148885109 + 0 NA Intergenic Intergenic 5322 ENSMUSG00000103559.1 ENSMUSG00000103559 ENSMUST00000195146 Gm38221 TEC Interval_74489 chr17 51839278 51839765 + 0 NA Intergenic Intergenic -3340 ENSMUSG00000103358.1 ENSMUSG00000103358 ENSMUST00000191669 Gm37593 TEC Interval_134709 chr6 30557976 30558229 + 0 NA intron (ENSMUSG00000071553.10, intron 3 of 3) protein_coding-intron (ENSMUSG00000071553.10, intron 10 of 10) -10267 ENSMUSG00000039070.5 ENSMUSG00000039070 ENSMUST00000049251 Cpa4 protein_coding Interval_51670 chr14 31241736 31242032 + 0 NA intron (ENSMUSG00000021902.7, intron 4 of 8) protein_coding-intron (ENSMUSG00000021902.7, intron 4 of 10) 9124 ENSMUSG00000021902.7 ENSMUSG00000021902 ENSMUST00000228140 Phf7 protein_coding Interval_135863 chr6 48015853 48016964 + 0 NA Intergenic Intergenic 27835 ENSMUSG00000071477.10 ENSMUSG00000071477 ENSMUST00000125385 Zfp777 protein_coding Interval_51568 chr14 30352155 30354378 + 0 NA promoter-TSS (ENSMUSG00000015968.18) protein_coding-promoter-TSS (ENSMUSG00000015968.18) 31088 ENSMUSG00000114670.1 ENSMUSG00000114670 ENSMUST00000224661 Gm18072 processed_pseudogene Interval_123362 chr5 31756229 31756693 + 0 NA intron (ENSMUSG00000052139.18, intron 3 of 11) protein_coding-intron (ENSMUSG00000052139.18, intron 5 of 13) 48065 ENSMUSG00000107151.1 ENSMUSG00000107151 ENSMUST00000201018 Gm43810 TEC Interval_131238 chr5 135942830 135943051 + 0 NA Intergenic Intergenic -8386 ENSMUSG00000051391.9 ENSMUSG00000051391 ENSMUST00000126192 Ywhag protein_coding Interval_133881 chr6 14033069 14033288 + 0 NA intron (ENSMUSG00000097616.7, intron 2 of 2) lincRNA-intron (ENSMUSG00000097616.7, intron 2 of 2) 27171 ENSMUSG00000107942.1 ENSMUSG00000107942 ENSMUST00000204172 Gm44411 processed_pseudogene Interval_98966 chr2 156388695 156389047 + 0 NA exon (ENSMUSG00000102869.2, exon 1 of 1) lincRNA-exon (ENSMUSG00000102869.2, exon 1 of 1) 2130 ENSMUSG00000084017.1 ENSMUSG00000084017 ENSMUST00000119897 Rpl21-ps9 processed_pseudogene Interval_79017 chr18 23981855 23982102 + 0 NA intron (ENSMUSG00000024274.10, intron 1 of 4) transcribed_unprocessed_pseudogene-intron (ENSMUSG00000024274.10, intron 1 of 4) 5248 ENSMUSG00000024274.10 ENSMUSG00000024274 ENSMUST00000224144 Zscan30 transcribed_unprocessed_pseudogene Interval_42669 chr13 17820174 17820921 + 0 NA promoter-TSS (ENSMUSG00000081285.2) processed_pseudogene-promoter-TSS (ENSMUSG00000081285.2) -399 ENSMUSG00000081285.2 ENSMUSG00000081285 ENSMUST00000118792 Gm18859 processed_pseudogene Interval_37784 chr12 71970107 71970422 + 0 NA intron (ENSMUSG00000034574.10, intron 17 of 25) protein_coding-intron (ENSMUSG00000034574.10, intron 17 of 25) 78995 ENSMUSG00000114155.1 ENSMUSG00000114155 ENSMUST00000221336 Gm7986 processed_pseudogene Interval_30255 chr11 92118518 92118798 + 0 NA Intergenic Intergenic -94245 ENSMUSG00000093113.1 ENSMUSG00000093113 ENSMUST00000175372 Gm22702 miRNA Interval_26629 chr11 59306361 59308357 + 0 NA intron (ENSMUSG00000000126.11, intron 1 of 3) protein_coding-intron (ENSMUSG00000000126.11, intron 1 of 3) 429 ENSMUSG00000000126.11 ENSMUSG00000000126 ENSMUST00000108783 Wnt9a protein_coding Interval_69179 chr16 91160149 91161904 + 0 NA Intergenic Intergenic -1937 ENSMUSG00000116763.1 ENSMUSG00000116763 ENSMUST00000231396 Gm41492 lincRNA Interval_123316 chr5 31341048 31341305 + 0 NA Intergenic Intergenic 15619 ENSMUSG00000106935.1 ENSMUSG00000106935 ENSMUST00000200995 Gm19457 processed_pseudogene Interval_71178 chr17 20910498 20911368 + 0 NA intron (ENSMUSG00000116974.1, intron 1 of 3) lincRNA-intron (ENSMUSG00000116974.1, intron 1 of 3) -5842 ENSMUSG00000050933.4 ENSMUSG00000050933 ENSMUST00000061278 Vmn1r231 protein_coding Interval_65913 chr16 30205541 30207698 + 0 NA promoter-TSS (ENSMUSG00000097621.1) lincRNA-promoter-TSS (ENSMUSG00000097621.1) -740 ENSMUSG00000097621.1 ENSMUSG00000097621 ENSMUST00000181113 Gm26562 lincRNA Interval_51694 chr14 31462148 31462897 + 0 NA Intergenic Intergenic -3297 ENSMUSG00000115283.1 ENSMUSG00000115283 ENSMUST00000227978 Gm49252 processed_pseudogene Interval_46320 chr13 63923778 63924739 + 0 NA Intergenic Intergenic 22263 ENSMUSG00000113340.1 ENSMUSG00000113340 ENSMUST00000220900 Gm7695 processed_pseudogene Interval_85057 chr19 21881996 21883253 + 0 NA Intergenic Intergenic -48868 ENSMUSG00000118021.1 ENSMUSG00000118021 ENSMUST00000237423 Gm50130 antisense Interval_75578 chr17 68607707 68607908 + 0 NA intron (ENSMUSG00000041565.17, intron 14 of 15) protein_coding-intron (ENSMUSG00000041565.17, intron 14 of 19) -91104 ENSMUSG00000117274.1 ENSMUSG00000117274 ENSMUST00000233538 Gm17921 processed_pseudogene Interval_150955 chr7 116701231 116702998 + 0 NA Intergenic Intergenic -10629 ENSMUSG00000088234.1 ENSMUSG00000088234 ENSMUST00000157609 Gm25423 snRNA Interval_95126 chr2 104095787 104096948 + 0 NA intron (ENSMUSG00000032679.12, intron 1 of 3) protein_coding-intron (ENSMUSG00000032679.12, intron 1 of 3) 566 ENSMUSG00000032679.12 ENSMUSG00000032679 ENSMUST00000153312 Cd59a protein_coding Interval_2583 chr1 40851532 40851765 + 0 NA intron (ENSMUSG00000079588.3, intron 4 of 4) protein_coding-intron (ENSMUSG00000079588.3, intron 4 of 4) 12584 ENSMUSG00000094136.2 ENSMUSG00000094136 ENSMUST00000178542 Gm5973 processed_pseudogene Interval_82582 chr18 75285957 75287220 + 0 NA intron (ENSMUSG00000035765.10, intron 16 of 16) protein_coding-intron (ENSMUSG00000035765.10, intron 16 of 16) 10729 ENSMUSG00000102047.1 ENSMUSG00000102047 ENSMUST00000186356 2010010A06Rik transcribed_processed_pseudogene Interval_113283 chr4 53110335 53110546 + 0 NA intron (ENSMUSG00000015243.4, intron 5 of 49) protein_coding-intron (ENSMUSG00000015243.4, intron 5 of 49) -69514 ENSMUSG00000015243.4 ENSMUSG00000015243 ENSMUST00000149127 Abca1 protein_coding Interval_53393 chr14 56877012 56878064 + 0 NA Intergenic Intergenic 12125 ENSMUSG00000114500.1 ENSMUSG00000114500 ENSMUST00000224747 Gm8983 processed_pseudogene Interval_43342 chr13 29436769 29436966 + 0 NA intron (ENSMUSG00000006191.17, intron 2 of 2) protein_coding-intron (ENSMUSG00000006191.17, intron 13 of 15) 80587 ENSMUSG00000006191.17 ENSMUSG00000006191 ENSMUST00000129231 Cdkal1 protein_coding Interval_35143 chr12 17551379 17551635 + 0 NA TTS (ENSMUSG00000011179.8) protein_coding-TTS (ENSMUSG00000011179.8) 5361 ENSMUSG00000064427.1 ENSMUSG00000064427 ENSMUST00000082493 Gm22748 snoRNA Interval_26344 chr11 56806427 56807846 + 0 NA Intergenic Intergenic 324187 ENSMUSG00000088228.1 ENSMUSG00000088228 ENSMUST00000157603 Gm22603 snoRNA Interval_83902 chr19 5463568 5464565 + 0 NA promoter-TSS (ENSMUSG00000024911.7) protein_coding-promoter-TSS (ENSMUSG00000024911.7) 1676 ENSMUSG00000024911.7 ENSMUSG00000024911 ENSMUST00000235533 Fibp protein_coding Interval_52553 chr14 47441365 47441583 + 0 NA Intergenic Intergenic 19057 ENSMUSG00000115617.1 ENSMUSG00000115617 ENSMUST00000226648 Gm48975 lincRNA Interval_145813 chr7 39517372 39518494 + 0 NA intron (ENSMUSG00000068959.6, intron 1 of 3) protein_coding-intron (ENSMUSG00000068959.6, intron 1 of 3) 167 ENSMUSG00000068959.6 ENSMUSG00000068959 ENSMUST00000108015 Zfp619 protein_coding Interval_41872 chr13 3729970 3730972 + 0 NA Intergenic Intergenic -29354 ENSMUSG00000113759.1 ENSMUSG00000113759 ENSMUST00000223157 Gm47695 lincRNA Interval_91822 chr2 49883648 49884409 + 0 NA intron (ENSMUSG00000026765.12, intron 4 of 4) protein_coding-intron (ENSMUSG00000026765.12, intron 3 of 9) 22852 ENSMUSG00000088825.1 ENSMUSG00000088825 ENSMUST00000158200 Gm25223 misc_RNA Interval_75576 chr17 68509278 68510165 + 0 NA intron (ENSMUSG00000041565.17, intron 11 of 12) protein_coding-intron (ENSMUSG00000041565.17, intron 12 of 19) -137911 ENSMUSG00000090224.1 ENSMUSG00000090224 ENSMUST00000159103 Gm15974 processed_pseudogene Interval_108480 chr3 127536647 127536911 + 0 NA TTS (ENSMUSG00000027968.11) protein_coding-TTS (ENSMUSG00000027968.11) -8449 ENSMUSG00000076252.1 ENSMUSG00000076252 ENSMUST00000102297 Mir302b miRNA Interval_5283 chr1 87230233 87231021 + 0 NA intron (ENSMUSG00000026254.17, intron 6 of 6) protein_coding-intron (ENSMUSG00000026254.17, intron 6 of 6) 16648 ENSMUSG00000026254.17 ENSMUSG00000026254 ENSMUST00000113231 Eif4e2 protein_coding Interval_98995 chr2 156529787 156530059 + 0 NA intron (ENSMUSG00000027624.20, intron 20 of 24) protein_coding-intron (ENSMUSG00000027624.20, intron 17 of 21) -17687 ENSMUSG00000027628.10 ENSMUSG00000027628 ENSMUST00000126250 Aar2 protein_coding Interval_147775 chr7 73495367 73495991 + 0 NA intron (ENSMUSG00000078671.11, intron 13 of 38) protein_coding-intron (ENSMUSG00000078671.11, intron 13 of 38) 3569 ENSMUSG00000108319.1 ENSMUSG00000108319 ENSMUST00000205458 Gm44552 TEC Interval_105478 chr3 86889995 86890188 + 0 NA intron (ENSMUSG00000028078.14, intron 2 of 15) protein_coding-intron (ENSMUSG00000028078.14, intron 2 of 15) 25599 ENSMUSG00000104074.1 ENSMUSG00000104074 ENSMUST00000195159 Gm37025 processed_pseudogene Interval_77667 chr17 93910483 93911234 + 0 NA Intergenic Intergenic 221413 ENSMUSG00000117543.1 ENSMUSG00000117543 ENSMUST00000235005 Gm50004 processed_pseudogene Interval_134733 chr6 31052955 31053414 + 0 NA Intergenic Intergenic 9563 ENSMUSG00000065610.1 ENSMUSG00000065610 ENSMUST00000083676 Mir29a miRNA Interval_126500 chr5 89208842 89210104 + 0 NA intron (ENSMUSG00000060961.16, intron 19 of 25) protein_coding-intron (ENSMUSG00000060961.16, intron 18 of 24) 226155 ENSMUSG00000035540.12 ENSMUSG00000035540 ENSMUST00000200534 Gc protein_coding Interval_108848 chr3 132582296 132583171 + 0 NA Intergenic Intergenic -45068 ENSMUSG00000089510.1 ENSMUSG00000089510 ENSMUST00000158885 Gm25307 snRNA Interval_107154 chr3 103995365 103996284 + 0 NA promoter-TSS (ENSMUSG00000058388.14) protein_coding-promoter-TSS (ENSMUSG00000058388.14) 27236 ENSMUSG00000058388.14 ENSMUSG00000058388 ENSMUST00000130385 Phtf1 protein_coding Interval_135203 chr6 37463724 37464800 + 0 NA Intergenic Intergenic -75419 ENSMUSG00000038641.12 ENSMUSG00000038641 ENSMUST00000123648 Akr1d1 protein_coding Interval_113419 chr4 54820875 54821577 + 0 NA Intergenic Intergenic -31902 ENSMUSG00000082111.1 ENSMUSG00000082111 ENSMUST00000120731 Gm12479 processed_pseudogene Interval_102662 chr3 29067103 29067357 + 0 NA Intergenic Intergenic -15070 ENSMUSG00000063600.14 ENSMUSG00000063600 ENSMUST00000140288 Egfem1 protein_coding Interval_91511 chr2 40257971 40258861 + 0 NA Intergenic Intergenic -28746 ENSMUSG00000081577.1 ENSMUSG00000081577 ENSMUST00000118767 Gm13455 processed_pseudogene Interval_96379 chr2 122058833 122059460 + 0 NA intron (ENSMUSG00000033396.13, intron 34 of 39) protein_coding-intron (ENSMUSG00000033396.13, intron 34 of 39) 30494 ENSMUSG00000027236.8 ENSMUSG00000027236 ENSMUST00000142747 Eif3j1 protein_coding Interval_59595 chr15 55810031 55810224 + 0 NA intron (ENSMUSG00000060429.12, intron 1 of 1) protein_coding-intron (ENSMUSG00000060429.12, intron 1 of 6) 96183 ENSMUSG00000060429.12 ENSMUSG00000060429 ENSMUST00000140574 Sntb1 protein_coding Interval_168723 chr9 86408621 86408923 + 0 NA intron (ENSMUSG00000032415.14, intron 8 of 9) protein_coding-intron (ENSMUSG00000032415.14, intron 8 of 9) 56178 ENSMUSG00000032415.14 ENSMUSG00000032415 ENSMUST00000121189 Ube2cbp protein_coding Interval_1970 chr1 35231933 35233458 + 0 NA Intergenic Intergenic -53611 ENSMUSG00000077231.1 ENSMUSG00000077231 ENSMUST00000104043 Gm25096 snoRNA Interval_57434 chr15 10751123 10751311 + 0 NA intron (ENSMUSG00000096971.2, intron 2 of 6) processed_transcript-intron (ENSMUSG00000096971.2, intron 2 of 6) 36317 ENSMUSG00000096971.2 ENSMUSG00000096971 ENSMUST00000181739 4930556M19Rik processed_transcript Interval_27064 chr11 62638262 62638553 + 0 NA exon (ENSMUSG00000085170.1, exon 4 of 4) antisense-exon (ENSMUSG00000085170.1, exon 4 of 4) 3703 ENSMUSG00000085170.1 ENSMUSG00000085170 ENSMUST00000142492 Lrrc75aos1 antisense Interval_33797 chr11 118584683 118585321 + 0 NA intron (ENSMUSG00000025576.17, intron 3 of 13) protein_coding-intron (ENSMUSG00000025576.17, intron 4 of 14) -77649 ENSMUSG00000025576.17 ENSMUSG00000025576 ENSMUST00000134774 Rbfox3 protein_coding Interval_96582 chr2 125900191 125900701 + 0 NA intron (ENSMUSG00000027207.15, intron 5 of 5) protein_coding-intron (ENSMUSG00000027207.15, intron 5 of 9) 34203 ENSMUSG00000027207.15 ENSMUSG00000027207 ENSMUST00000110454 Galk2 protein_coding Interval_124298 chr5 43740780 43741096 + 0 NA TTS (ENSMUSG00000039765.15) protein_coding-TTS (ENSMUSG00000039765.15) 13333 ENSMUSG00000104728.1 ENSMUSG00000104728 ENSMUST00000196543 Gm42462 TEC Interval_94337 chr2 89569218 89570345 + 0 NA Intergenic Intergenic 8666 ENSMUSG00000111456.1 ENSMUSG00000111456 ENSMUST00000214870 Olfr1245 protein_coding Interval_147588 chr7 68666969 68667487 + 0 NA Intergenic Intergenic 48390 ENSMUSG00000094854.3 ENSMUSG00000094854 ENSMUST00000187472 Gm5334 processed_pseudogene Interval_107964 chr3 117776021 117776536 + 0 NA Intergenic Intergenic 70430 ENSMUSG00000028007.13 ENSMUSG00000028007 ENSMUST00000196421 Snx7 protein_coding Interval_139656 chr6 105949639 105950167 + 0 NA intron (ENSMUSG00000064293.14, intron 1 of 16) protein_coding-intron (ENSMUSG00000064293.14, intron 3 of 24) -272322 ENSMUSG00000085067.2 ENSMUSG00000085067 ENSMUST00000142962 Gm15631 lincRNA Interval_129752 chr5 122121934 122123744 + 0 NA exon (ENSMUSG00000043036.13, exon 7 of 13) protein_coding-exon (ENSMUSG00000043036.13, exon 7 of 13) -11726 ENSMUSG00000043036.13 ENSMUSG00000043036 ENSMUST00000196608 Ccdc63 protein_coding Interval_14185 chr10 28485305 28486046 + 0 NA intron (ENSMUSG00000019889.10, intron 11 of 14) protein_coding-intron (ENSMUSG00000019889.10, intron 11 of 31) -101318 ENSMUSG00000019889.10 ENSMUSG00000019889 ENSMUST00000220404 Ptprk protein_coding Interval_11072 chr1 179157744 179158949 + 0 NA intron (ENSMUSG00000055067.15, intron 5 of 11) protein_coding-intron (ENSMUSG00000055067.15, intron 2 of 8) -240732 ENSMUSG00000089713.1 ENSMUSG00000089713 ENSMUST00000162545 Gm16564 antisense Interval_37856 chr12 72609494 72609863 + 0 NA promoter-TSS (ENSMUSG00000109482.2) protein_coding-promoter-TSS (ENSMUSG00000109482.2) -11097 ENSMUSG00000113143.1 ENSMUSG00000113143 ENSMUST00000222501 Ly6e-ps1 processed_pseudogene Interval_9730 chr1 161367838 161368132 + 0 NA Intergenic Intergenic -27424 ENSMUSG00000026700.4 ENSMUSG00000026700 ENSMUST00000028024 Tnfsf4 protein_coding Interval_19412 chr10 99035925 99036827 + 0 NA Intergenic Intergenic -3096 ENSMUSG00000112660.1 ENSMUSG00000112660 ENSMUST00000219298 Gm48761 TEC Interval_42164 chr13 9387543 9388078 + 0 NA intron (ENSMUSG00000048264.16, intron 1 of 36) protein_coding-intron (ENSMUSG00000048264.16, intron 1 of 38) -24707 ENSMUSG00000112955.1 ENSMUSG00000112955 ENSMUST00000221027 Gm48889 TEC Interval_40958 chr12 110251853 110252663 + 0 NA Intergenic Intergenic 15766 ENSMUSG00000113605.1 ENSMUSG00000113605 ENSMUST00000222054 4930425K24Rik TEC Interval_107313 chr3 105716103 105717170 + 0 NA exon (ENSMUSG00000048458.8, exon 2 of 2) protein_coding-exon (ENSMUSG00000048458.8, exon 2 of 2) 10511 ENSMUSG00000106317.1 ENSMUSG00000106317 ENSMUST00000198060 Gm43848 lincRNA Interval_132619 chr5 146776968 146777744 + 0 NA intron (ENSMUSG00000029640.17, intron 1 of 8) protein_coding-intron (ENSMUSG00000029640.17, intron 1 of 8) -18562 ENSMUSG00000104845.1 ENSMUSG00000104845 ENSMUST00000197536 1700041I07Rik lincRNA Interval_9710 chr1 161200098 161200409 + 0 NA promoter-TSS (ENSMUSG00000102817.2) transcribed_unprocessed_pseudogene-promoter-TSS (ENSMUSG00000102817.2) -556 ENSMUSG00000102817.2 ENSMUSG00000102817 ENSMUST00000212885 Gm6185 transcribed_unprocessed_pseudogene Interval_105047 chr3 80179528 80179823 + 0 NA intron (ENSMUSG00000103181.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000103181.1, intron 1 of 2) 14955 ENSMUSG00000103154.1 ENSMUSG00000103154 ENSMUST00000191951 Gm38295 unprocessed_pseudogene Interval_96227 chr2 120718089 120718278 + 0 NA TTS (ENSMUSG00000027284.16) protein_coding-TTS (ENSMUSG00000027284.16) 10455 ENSMUSG00000027284.16 ENSMUSG00000027284 ENSMUST00000136725 Cdan1 protein_coding Interval_125493 chr5 67633175 67634376 + 0 NA exon (ENSMUSG00000107041.1, exon 1 of 1) TEC-exon (ENSMUSG00000107041.1, exon 1 of 1) 1533 ENSMUSG00000107041.1 ENSMUSG00000107041 ENSMUST00000201718 Gm42735 TEC Interval_7464 chr1 131565945 131566636 + 0 NA Intergenic Intergenic -33433 ENSMUSG00000026432.7 ENSMUSG00000026432 ENSMUST00000190410 Avpr1b protein_coding Interval_5792 chr1 91890998 91891304 + 0 NA Intergenic Intergenic -25109 ENSMUSG00000102745.1 ENSMUSG00000102745 ENSMUST00000193764 Gm37600 TEC Interval_87402 chr19 48976831 48977507 + 0 NA Intergenic Intergenic 14812 ENSMUSG00000118014.1 ENSMUSG00000118014 ENSMUST00000236524 4930535F04Rik TEC Interval_68269 chr16 71834458 71835958 + 0 NA Intergenic Intergenic 20579 ENSMUSG00000116664.1 ENSMUSG00000116664 ENSMUST00000232521 Gm18549 processed_pseudogene Interval_24402 chr11 33013597 33014609 + 0 NA Intergenic Intergenic 25600 ENSMUSG00000081076.3 ENSMUSG00000081076 ENSMUST00000121691 Rpsa-ps4 processed_pseudogene Interval_60734 chr15 76433543 76434644 + 0 NA TTS (ENSMUSG00000022558.16) protein_coding-TTS (ENSMUSG00000022558.16) 879 ENSMUSG00000099260.1 ENSMUSG00000099260 ENSMUST00000183412 Mir6954 miRNA Interval_142273 chr6 140318951 140319164 + 0 NA promoter-TSS (ENSMUSG00000065882.1) rRNA-promoter-TSS (ENSMUSG00000065882.1) -573 ENSMUSG00000065882.1 ENSMUSG00000065882 ENSMUST00000083948 n-R5s168 rRNA Interval_9018 chr1 153103298 153104482 + 0 NA intron (ENSMUSG00000042751.14, intron 8 of 11) protein_coding-intron (ENSMUSG00000042751.14, intron 8 of 10) 10410 ENSMUSG00000042751.14 ENSMUSG00000042751 ENSMUST00000190960 Nmnat2 protein_coding Interval_103579 chr3 50300404 50301211 + 0 NA intron (ENSMUSG00000027737.10, intron 11 of 11) protein_coding-intron (ENSMUSG00000027737.10, intron 11 of 11) 45952 ENSMUSG00000102167.1 ENSMUSG00000102167 ENSMUST00000193451 Gm2345 processed_pseudogene Interval_39046 chr12 84653825 84654350 + 0 NA Intergenic Intergenic 11532 ENSMUSG00000071235.12 ENSMUSG00000071235 ENSMUST00000095551 Vrtn protein_coding Interval_7827 chr1 133954855 133955174 + 0 NA Intergenic Intergenic -7148 ENSMUSG00000100987.1 ENSMUSG00000100987 ENSMUST00000188504 Gm1627 lincRNA Interval_9385 chr1 156709277 156709747 + 0 NA intron (ENSMUSG00000033557.17, intron 1 of 7) protein_coding-intron (ENSMUSG00000033557.17, intron 1 of 7) -10627 ENSMUSG00000033557.17 ENSMUSG00000033557 ENSMUST00000147931 Fam20b protein_coding Interval_135216 chr6 37600855 37601409 + 0 NA Intergenic Intergenic 59718 ENSMUSG00000106889.1 ENSMUSG00000106889 ENSMUST00000201541 Gm7463 processed_pseudogene Interval_61127 chr15 79402443 79403941 + 0 NA promoter-TSS (ENSMUSG00000009035.15) protein_coding-promoter-TSS (ENSMUSG00000009035.15) 47 ENSMUSG00000009035.15 ENSMUSG00000009035 ENSMUST00000229049 Tmem184b protein_coding Interval_126209 chr5 82366484 82366771 + 0 NA Intergenic Intergenic 29776 ENSMUSG00000106926.1 ENSMUSG00000106926 ENSMUST00000200912 Rpl7-ps7 processed_pseudogene Interval_138031 chr6 84407441 84408399 + 0 NA Intergenic Intergenic 15918 ENSMUSG00000107797.1 ENSMUSG00000107797 ENSMUST00000203521 Gm10445 lincRNA Interval_129463 chr5 120357913 120358469 + 0 NA Intergenic Intergenic -12223 ENSMUSG00000107141.1 ENSMUSG00000107141 ENSMUST00000200789 Gm42654 lincRNA Interval_160289 chr8 107758667 107758900 + 0 NA Intergenic Intergenic -67939 ENSMUSG00000110508.1 ENSMUSG00000110508 ENSMUST00000212585 Gm8940 processed_pseudogene Interval_44391 chr13 44580495 44581331 + 0 NA Intergenic Intergenic -12245 ENSMUSG00000113977.1 ENSMUSG00000113977 ENSMUST00000222558 Gm34276 lincRNA Interval_151830 chr7 126975571 126977288 + 0 NA promoter-TSS (ENSMUSG00000097075.3) protein_coding-promoter-TSS (ENSMUSG00000097075.3) -583 ENSMUSG00000097075.3 ENSMUSG00000097075 ENSMUST00000206667 Cdiptos protein_coding Interval_85975 chr19 34496027 34496245 + 0 NA intron (ENSMUSG00000024781.16, intron 4 of 4) protein_coding-intron (ENSMUSG00000024781.16, intron 8 of 9) -20972 ENSMUSG00000050370.5 ENSMUSG00000050370 ENSMUST00000050562 Ch25h protein_coding Interval_126021 chr5 76904861 76906421 + 0 NA promoter-TSS (ENSMUSG00000055923.16) protein_coding-promoter-TSS (ENSMUSG00000055923.16) -10563 ENSMUSG00000055923.16 ENSMUSG00000055923 ENSMUST00000134805 Aasdh protein_coding Interval_10253 chr1 167613176 167613640 + 0 NA intron (ENSMUSG00000015843.10, intron 2 of 10) protein_coding-intron (ENSMUSG00000015843.10, intron 1 of 9) 14948 ENSMUSG00000015843.10 ENSMUSG00000015843 ENSMUST00000111380 Rxrg protein_coding Interval_118226 chr4 129623697 129625256 + 0 NA promoter-TSS (ENSMUSG00000028795.15) protein_coding-promoter-TSS (ENSMUSG00000028795.15) -632 ENSMUSG00000028795.15 ENSMUSG00000028795 ENSMUST00000152290 Ccdc28b protein_coding Interval_56266 chr14 115468207 115468397 + 0 NA intron (ENSMUSG00000022112.14, intron 5 of 7) protein_coding-intron (ENSMUSG00000022112.14, intron 5 of 7) -58750 ENSMUSG00000093551.1 ENSMUSG00000093551 ENSMUST00000176582 4930505G20Rik processed_transcript Interval_15609 chr10 52288672 52289825 + 0 NA TTS (ENSMUSG00000019891.15) protein_coding-TTS (ENSMUSG00000019891.15) 54409 ENSMUSG00000112550.1 ENSMUSG00000112550 ENSMUST00000218299 Gm6627 processed_pseudogene Interval_68383 chr16 75325465 75325635 + 0 NA Intergenic Intergenic 73724 ENSMUSG00000116867.1 ENSMUSG00000116867 ENSMUST00000232003 Gm49677 TEC Interval_37660 chr12 70903695 70903898 + 0 NA Intergenic Intergenic 8355 ENSMUSG00000113584.1 ENSMUSG00000113584 ENSMUST00000221434 Gm46355 lincRNA Interval_26343 chr11 56785857 56786524 + 0 NA Intergenic Intergenic 303241 ENSMUSG00000088228.1 ENSMUSG00000088228 ENSMUST00000157603 Gm22603 snoRNA Interval_113719 chr4 57833900 57834953 + 0 NA intron (ENSMUSG00000038729.24, intron 1 of 1) protein_coding-intron (ENSMUSG00000038729.24, intron 2 of 2) 13376 ENSMUSG00000038729.24 ENSMUSG00000038729 ENSMUST00000102902 Pakap protein_coding Interval_31384 chr11 100362361 100364272 + 0 NA Intergenic Intergenic -1190 ENSMUSG00000091478.2 ENSMUSG00000091478 ENSMUST00000081241 Gm10039 processed_pseudogene Interval_137519 chr6 72862384 72863448 + 0 NA intron (ENSMUSG00000055239.10, intron 1 of 3) protein_coding-intron (ENSMUSG00000055239.10, intron 1 of 6) 33003 ENSMUSG00000107610.1 ENSMUSG00000107610 ENSMUST00000205107 D530018E20Rik TEC Interval_150174 chr7 107601045 107601456 + 0 NA intron (ENSMUSG00000036528.16, intron 1 of 5) protein_coding-intron (ENSMUSG00000036528.16, intron 1 of 24) 8300 ENSMUSG00000109374.1 ENSMUSG00000109374 ENSMUST00000207374 Gm44773 lincRNA Interval_87036 chr19 45731366 45732198 + 0 NA Intergenic Intergenic 11133 ENSMUSG00000025219.13 ENSMUSG00000025219 ENSMUST00000111925 Fgf8 protein_coding Interval_142292 chr6 140475577 140476172 + 0 NA intron (ENSMUSG00000030231.11, intron 1 of 9) protein_coding-intron (ENSMUSG00000030231.11, intron 3 of 30) -55089 ENSMUSG00000084477.1 ENSMUSG00000084477 ENSMUST00000122528 Gm25780 misc_RNA Interval_137835 chr6 82844347 82845472 + 0 NA Intergenic Intergenic 13475 ENSMUSG00000108015.3 ENSMUSG00000108015 ENSMUST00000203038 Gm32591 lincRNA Interval_47906 chr13 94305446 94306007 + 0 NA Intergenic Intergenic -5867 ENSMUSG00000114056.1 ENSMUSG00000114056 ENSMUST00000220897 Gm5668 processed_pseudogene Interval_120672 chr4 150022309 150022627 + 0 NA Intergenic Intergenic -21203 ENSMUSG00000028980.14 ENSMUSG00000028980 ENSMUST00000152907 H6pd protein_coding Interval_68267 chr16 71719722 71720049 + 0 NA Intergenic Intergenic 56097 ENSMUSG00000065924.1 ENSMUSG00000065924 ENSMUST00000083990 Gm22797 snoRNA Interval_65820 chr16 29451653 29452625 + 0 NA intron (ENSMUSG00000038094.15, intron 13 of 29) protein_coding-intron (ENSMUSG00000038094.15, intron 14 of 21) -50351 ENSMUSG00000118569.1 ENSMUSG00000118569 ENSMUST00000239142 AC175464.1 unprocessed_pseudogene Interval_49103 chr13 108043044 108045037 + 0 NA promoter-TSS (ENSMUSG00000071180.5) protein_coding-promoter-TSS (ENSMUSG00000071180.5) -446 ENSMUSG00000071180.5 ENSMUSG00000071180 ENSMUST00000224390 Smim15 protein_coding Interval_79939 chr18 36085580 36085821 + 0 NA intron (ENSMUSG00000060275.14, intron 1 of 9) protein_coding-intron (ENSMUSG00000060275.14, intron 2 of 7) -17075 ENSMUSG00000060275.14 ENSMUSG00000060275 ENSMUST00000115705 Nrg2 protein_coding Interval_21598 chr10 130444540 130445773 + 0 NA exon (ENSMUSG00000092162.3, exon 6 of 6) protein_coding-exon (ENSMUSG00000092162.3, exon 6 of 6) 10894 ENSMUSG00000092162.3 ENSMUSG00000092162 ENSMUST00000170257 Vmn2r86 protein_coding Interval_25172 chr11 44754151 44754650 + 0 NA intron (ENSMUSG00000057098.14, intron 6 of 15) protein_coding-intron (ENSMUSG00000057098.14, intron 6 of 15) -91724 ENSMUSG00000085784.1 ENSMUSG00000085784 ENSMUST00000130493 Gm12158 antisense Interval_138702 chr6 91279534 91279741 + 0 NA Intergenic Intergenic 66810 ENSMUSG00000064080.12 ENSMUSG00000064080 ENSMUST00000137029 Fbln2 protein_coding Interval_90508 chr2 30862231 30862616 + 0 NA intron (ENSMUSG00000039476.13, intron 1 of 1) protein_coding-intron (ENSMUSG00000039476.13, intron 1 of 3) 16979 ENSMUSG00000039476.13 ENSMUSG00000039476 ENSMUST00000137924 Prrx2 protein_coding Interval_32754 chr11 110365168 110366282 + 0 NA Intergenic Intergenic -28009 ENSMUSG00000018800.14 ENSMUSG00000018800 ENSMUST00000148984 Abca5 protein_coding Interval_64805 chr16 15984065 15985732 + 0 NA intron (ENSMUSG00000041974.10, intron 8 of 16) protein_coding-intron (ENSMUSG00000041974.10, intron 8 of 19) 26111 ENSMUSG00000077350.1 ENSMUSG00000077350 ENSMUST00000104162 n-R5s31 rRNA Interval_77101 chr17 86586179 86587101 + 0 NA intron (ENSMUSG00000045038.14, intron 11 of 14) protein_coding-intron (ENSMUSG00000045038.14, intron 12 of 15) -81408 ENSMUSG00000071036.2 ENSMUSG00000071036 ENSMUST00000095186 Gm10309 protein_coding Interval_76901 chr17 84848121 84849186 + 0 NA Intergenic Intergenic -3885 ENSMUSG00000117631.1 ENSMUSG00000117631 ENSMUST00000234899 Gm9400 unprocessed_pseudogene Interval_8597 chr1 143672367 143672755 + 0 NA intron (ENSMUSG00000026361.9, intron 7 of 10) protein_coding-intron (ENSMUSG00000026361.9, intron 7 of 16) -10669 ENSMUSG00000089640.1 ENSMUSG00000089640 ENSMUST00000161973 Gm6397 processed_pseudogene Interval_107253 chr3 104992589 104993350 + 0 NA Intergenic Intergenic -1063 ENSMUSG00000105355.1 ENSMUSG00000105355 ENSMUST00000198827 Gm40117 antisense Interval_10017 chr1 165095078 165095307 + 0 NA Intergenic Intergenic -3264 ENSMUSG00000102408.1 ENSMUSG00000102408 ENSMUST00000195635 4930568G15Rik lincRNA Interval_93313 chr2 71865686 71867974 + 0 NA Intergenic Intergenic -6516 ENSMUSG00000006494.11 ENSMUSG00000006494 ENSMUST00000129427 Pdk1 protein_coding Interval_53557 chr14 59200676 59201842 + 0 NA promoter-TSS (ENSMUSG00000035469.17) protein_coding-promoter-TSS (ENSMUSG00000035469.17) -16346 ENSMUSG00000035469.17 ENSMUSG00000035469 ENSMUST00000147280 Rcbtb1 protein_coding Interval_43706 chr13 35467790 35468087 + 0 NA Intergenic Intergenic 72555 ENSMUSG00000114838.1 ENSMUSG00000114838 ENSMUST00000226101 Gm48703 lincRNA Interval_127516 chr5 104798652 104799120 + 0 NA Intergenic Intergenic 23107 ENSMUSG00000048334.8 ENSMUSG00000048334 ENSMUST00000055593 Gm8258 processed_pseudogene Interval_172349 chrX 13305785 13306061 + 0 NA Intergenic Intergenic 3638 ENSMUSG00000081255.1 ENSMUSG00000081255 ENSMUST00000119296 Gm5380 processed_pseudogene Interval_43008 chr13 22879271 22879547 + 0 NA promoter-TSS (ENSMUSG00000089615.1) snoRNA-promoter-TSS (ENSMUSG00000089615.1) 98 ENSMUSG00000089615.1 ENSMUSG00000089615 ENSMUST00000158990 Gm23774 snoRNA Interval_116091 chr4 107570449 107571105 + 0 NA intron (ENSMUSG00000034762.9, intron 3 of 9) protein_coding-intron (ENSMUSG00000034762.9, intron 4 of 10) -10426 ENSMUSG00000034762.9 ENSMUSG00000034762 ENSMUST00000125573 Glis1 protein_coding Interval_78103 chr18 8142005 8142732 + 0 NA Intergenic Intergenic -38211 ENSMUSG00000117490.1 ENSMUSG00000117490 ENSMUST00000234300 Gm35031 lincRNA Interval_159801 chr8 103784752 103785243 + 0 NA Intergenic Intergenic 181198 ENSMUSG00000110336.1 ENSMUSG00000110336 ENSMUST00000211119 4933400L20Rik lincRNA Interval_164163 chr9 32097707 32098233 + 0 NA Intergenic Intergenic 19689 ENSMUSG00000110840.1 ENSMUSG00000110840 ENSMUST00000214707 Gm47496 processed_pseudogene Interval_66530 chr16 34901865 34902890 + 0 NA intron (ENSMUSG00000022836.11, intron 1 of 17) protein_coding-intron (ENSMUSG00000022836.11, intron 11 of 31) -2762 ENSMUSG00000022836.11 ENSMUSG00000022836 ENSMUST00000231589 Mylk protein_coding Interval_169670 chr9 100095666 100096674 + 0 NA Intergenic Intergenic 72522 ENSMUSG00000101584.2 ENSMUSG00000101584 ENSMUST00000215896 4930519F24Rik lincRNA Interval_4811 chr1 79611378 79611788 + 0 NA intron (ENSMUSG00000054702.14, intron 4 of 4) protein_coding-intron (ENSMUSG00000054702.14, intron 4 of 4) 9451 ENSMUSG00000102235.1 ENSMUSG00000102235 ENSMUST00000195349 Gm37886 TEC Interval_162595 chr9 5542189 5542795 + 0 NA Intergenic Intergenic 197016 ENSMUSG00000025887.10 ENSMUSG00000025887 ENSMUST00000151332 Casp12 protein_coding Interval_67853 chr16 57984497 57984828 + 0 NA intron (ENSMUSG00000116920.1, intron 2 of 3) lincRNA-intron (ENSMUSG00000116920.1, intron 2 of 3) 21361 ENSMUSG00000116770.1 ENSMUSG00000116770 ENSMUST00000231442 Gm49576 lincRNA Interval_47117 chr13 75911821 75912004 + 0 NA TTS (ENSMUSG00000021589.13) protein_coding-TTS (ENSMUSG00000021589.13) 6765 ENSMUSG00000070170.1 ENSMUSG00000070170 ENSMUST00000093660 Gm24163 snoRNA Interval_107702 chr3 111385413 111385979 + 0 NA Intergenic Intergenic -62839 ENSMUSG00000106100.1 ENSMUSG00000106100 ENSMUST00000199881 Gm9314 processed_pseudogene Interval_141147 chr6 125257412 125257779 + 0 NA TTS (ENSMUSG00000089556.1) snoRNA-TTS (ENSMUSG00000089556.1) 413 ENSMUSG00000107965.1 ENSMUSG00000107965 ENSMUST00000204996 Gm44259 processed_pseudogene Interval_38720 chr12 81570993 81571406 + 0 NA Intergenic Intergenic -2725 ENSMUSG00000008438.3 ENSMUSG00000008438 ENSMUST00000008582 Adam21 protein_coding Interval_19616 chr10 105808988 105809613 + 0 NA promoter-TSS (ENSMUSG00000112820.1) TEC-promoter-TSS (ENSMUSG00000112820.1) -433 ENSMUSG00000112820.1 ENSMUSG00000112820 ENSMUST00000218986 Gm48298 TEC Interval_103999 chr3 56870440 56871067 + 0 NA Intergenic Intergenic -41966 ENSMUSG00000105113.1 ENSMUSG00000105113 ENSMUST00000200018 Gm2622 processed_pseudogene Interval_14059 chr10 26352644 26352856 + 0 NA intron (ENSMUSG00000039089.15, intron 1 of 8) protein_coding-intron (ENSMUSG00000039089.15, intron 1 of 21) 4107 ENSMUSG00000098898.1 ENSMUSG00000098898 ENSMUST00000183340 Gm27754 miRNA Interval_166937 chr9 64018123 64018783 + 0 NA intron (ENSMUSG00000036867.7, intron 1 of 3) protein_coding-intron (ENSMUSG00000036867.7, intron 1 of 3) 3579 ENSMUSG00000036867.7 ENSMUSG00000036867 ENSMUST00000179458 Smad6 protein_coding Interval_40705 chr12 107689368 107689914 + 0 NA Intergenic Intergenic 45855 ENSMUSG00000085641.1 ENSMUSG00000085641 ENSMUST00000144556 4930465M20Rik lincRNA Interval_43773 chr13 36297500 36298542 + 0 NA intron (ENSMUSG00000021420.13, intron 4 of 7) protein_coding-intron (ENSMUSG00000021420.13, intron 4 of 6) -28937 ENSMUSG00000021420.13 ENSMUSG00000021420 ENSMUST00000225048 Fars2 protein_coding Interval_169821 chr9 102205246 102206577 + 0 NA intron (ENSMUSG00000032537.15, intron 2 of 4) protein_coding-intron (ENSMUSG00000032537.15, intron 2 of 15) 33173 ENSMUSG00000102963.1 ENSMUSG00000102963 ENSMUST00000192536 Gm37945 TEC Interval_15595 chr10 52072136 52073031 + 0 NA intron (ENSMUSG00000019893.13, intron 35 of 40) protein_coding-intron (ENSMUSG00000019893.13, intron 38 of 43) 40332 ENSMUSG00000092914.1 ENSMUSG00000092914 ENSMUST00000175173 Gm24084 miRNA Interval_141849 chr6 134914478 134914955 + 0 NA Intergenic Intergenic -5797 ENSMUSG00000003031.14 ENSMUSG00000003031 ENSMUST00000204807 Cdkn1b protein_coding Interval_30878 chr11 97025805 97026409 + 0 NA exon (ENSMUSG00000087067.1, exon 1 of 2) processed_transcript-exon (ENSMUSG00000087067.1, exon 1 of 2) 141 ENSMUSG00000087067.1 ENSMUSG00000087067 ENSMUST00000128111 Gm11532 processed_transcript Interval_143025 chr6 148598432 148600692 + 0 NA Intergenic Intergenic 14747 ENSMUSG00000070995.10 ENSMUSG00000070995 ENSMUST00000150112 Gm6313 lincRNA Interval_112042 chr4 33448433 33448810 + 0 NA intron (ENSMUSG00000028274.17, intron 14 of 15) protein_coding-intron (ENSMUSG00000028274.17, intron 14 of 15) 4268 ENSMUSG00000081206.1 ENSMUSG00000081206 ENSMUST00000118608 Gm11935 processed_pseudogene Interval_132319 chr5 144154186 144154903 + 0 NA intron (ENSMUSG00000038970.7, intron 6 of 13) protein_coding-intron (ENSMUSG00000038970.7, intron 6 of 13) -35742 ENSMUSG00000052271.7 ENSMUSG00000052271 ENSMUST00000060747 Bhlha15 protein_coding Interval_54204 chr14 66213770 66214531 + 0 NA promoter-TSS (ENSMUSG00000059456.13) protein_coding-promoter-TSS (ENSMUSG00000059456.13) -598 ENSMUSG00000059456.13 ENSMUSG00000059456 ENSMUST00000127083 Ptk2b protein_coding Interval_9736 chr1 161496087 161496697 + 0 NA intron (ENSMUSG00000066755.2, intron 1 of 2) protein_coding-intron (ENSMUSG00000066755.2, intron 1 of 2) 1737 ENSMUSG00000066755.2 ENSMUSG00000066755 ENSMUST00000086084 Tnfsf18 protein_coding Interval_80795 chr18 47219129 47219501 + 0 NA intron (ENSMUSG00000042705.9, intron 6 of 6) protein_coding-intron (ENSMUSG00000042705.9, intron 6 of 6) 64942 ENSMUSG00000093158.1 ENSMUSG00000093158 ENSMUST00000175417 Gm25036 miRNA Interval_101576 chr3 6991263 6992387 + 0 NA Intergenic Intergenic 14557 ENSMUSG00000089220.1 ENSMUSG00000089220 ENSMUST00000158595 Gm22074 snoRNA Interval_21422 chr10 128510408 128511557 + 0 NA TTS (ENSMUSG00000099292.1) miRNA-TTS (ENSMUSG00000099292.1) 1048 ENSMUSG00000099292.1 ENSMUSG00000099292 ENSMUST00000184514 Mir6916 miRNA Interval_23823 chr11 26592743 26594052 + 0 NA exon (ENSMUSG00000068314.5, exon 1 of 1) TEC-exon (ENSMUSG00000068314.5, exon 1 of 1) 171 ENSMUSG00000068314.5 ENSMUSG00000068314 ENSMUST00000089614 Gm6899 TEC Interval_164123 chr9 31687980 31689125 + 0 NA Intergenic Intergenic -10526 ENSMUSG00000110853.1 ENSMUSG00000110853 ENSMUST00000217207 Gm47436 lincRNA Interval_84117 chr19 7308164 7308458 + 0 NA intron (ENSMUSG00000024969.15, intron 1 of 7) protein_coding-intron (ENSMUSG00000024969.15, intron 1 of 17) 10653 ENSMUSG00000091558.1 ENSMUSG00000091558 ENSMUST00000166590 Gm17227 antisense Interval_6910 chr1 120596365 120597387 + 0 NA Intergenic Intergenic -5542 ENSMUSG00000058665.8 ENSMUSG00000058665 ENSMUST00000079721 En1 protein_coding Interval_127233 chr5 101713171 101714430 + 0 NA Intergenic Intergenic -9737 ENSMUSG00000105097.1 ENSMUSG00000105097 ENSMUST00000196076 Gm42133 lincRNA Interval_133923 chr6 15712743 15714319 + 0 NA Intergenic Intergenic -7130 ENSMUSG00000041390.18 ENSMUSG00000041390 ENSMUST00000128849 Mdfic protein_coding Interval_6869 chr1 120231228 120231743 + 0 NA intron (ENSMUSG00000026389.16, intron 5 of 5) protein_coding-intron (ENSMUSG00000026389.16, intron 4 of 4) 33770 ENSMUSG00000026389.16 ENSMUSG00000026389 ENSMUST00000112643 Steap3 protein_coding Interval_117917 chr4 127048790 127049012 + 0 NA exon (ENSMUSG00000043872.14, exon 6 of 6) protein_coding-exon (ENSMUSG00000043872.14, exon 6 of 6) 2518 ENSMUSG00000084088.1 ENSMUSG00000084088 ENSMUST00000117934 Gm12941 processed_pseudogene Interval_91861 chr2 50549975 50550918 + 0 NA intron (ENSMUSG00000085429.1, intron 3 of 4) lincRNA-intron (ENSMUSG00000085429.1, intron 3 of 4) 2532 ENSMUSG00000085429.1 ENSMUSG00000085429 ENSMUST00000146690 Gm13485 lincRNA Interval_35418 chr12 21470354 21471751 + 0 NA Intergenic Intergenic 53173 ENSMUSG00000097055.2 ENSMUSG00000097055 ENSMUST00000227598 Gm4419 antisense Interval_124967 chr5 62628422 62628624 + 0 NA intron (ENSMUSG00000037999.13, intron 27 of 32) protein_coding-intron (ENSMUSG00000037999.13, intron 27 of 32) -15065 ENSMUSG00000105694.1 ENSMUSG00000105694 ENSMUST00000196835 Gm43237 TEC Interval_142816 chr6 146114736 146115229 + 0 NA intron (ENSMUSG00000030287.15, intron 54 of 55) protein_coding-intron (ENSMUSG00000030287.15, intron 55 of 56) -113219 ENSMUSG00000108161.1 ENSMUSG00000108161 ENSMUST00000203815 Gm32914 lincRNA Interval_154801 chr8 23448799 23449757 + 0 NA exon (ENSMUSG00000031548.7, exon 3 of 3) protein_coding-exon (ENSMUSG00000031548.7, exon 3 of 3) 37776 ENSMUSG00000031548.7 ENSMUSG00000031548 ENSMUST00000033952 Sfrp1 protein_coding Interval_116736 chr4 117005797 117006497 + 0 NA TTS (ENSMUSG00000046861.9) protein_coding-TTS (ENSMUSG00000046861.9) -3135 ENSMUSG00000086890.1 ENSMUSG00000086890 ENSMUST00000138729 1700021J08Rik antisense Interval_76772 chr17 83928918 83929834 + 0 NA Intergenic Intergenic 11439 ENSMUSG00000117442.1 ENSMUSG00000117442 ENSMUST00000234364 1810073O08Rik lincRNA Interval_80945 chr18 50848138 50848981 + 0 NA Intergenic Intergenic -154545 ENSMUSG00000118088.1 ENSMUSG00000118088 ENSMUST00000236182 Gm3815 processed_pseudogene Interval_106012 chr3 90627803 90628326 + 0 NA Intergenic Intergenic 14304 ENSMUSG00000001025.8 ENSMUSG00000001025 ENSMUST00000200289 S100a6 protein_coding Interval_28863 chr11 78837509 78838838 + 0 NA TTS (ENSMUSG00000072640.11) protein_coding-TTS (ENSMUSG00000072640.11) 11589 ENSMUSG00000072640.11 ENSMUSG00000072640 ENSMUST00000100748 Lyrm9 protein_coding Interval_8719 chr1 149929162 149929656 + 0 NA intron (ENSMUSG00000056220.14, intron 2 of 2) protein_coding-intron (ENSMUSG00000056220.14, intron 2 of 17) 31849 ENSMUSG00000056220.14 ENSMUSG00000056220 ENSMUST00000134676 Pla2g4a protein_coding Interval_54034 chr14 64641635 64642802 + 0 NA Intergenic Intergenic -10342 ENSMUSG00000060012.9 ENSMUSG00000060012 ENSMUST00000224677 Kif13b protein_coding Interval_113797 chr4 58692788 58693454 + 0 NA Intergenic Intergenic -34529 ENSMUSG00000086470.1 ENSMUSG00000086470 ENSMUST00000127456 Gm12580 lincRNA Interval_59182 chr15 46984203 46985150 + 0 NA Intergenic Intergenic -40228 ENSMUSG00000088679.1 ENSMUSG00000088679 ENSMUST00000158054 Gm23665 snRNA Interval_14710 chr10 39230691 39231607 + 0 NA Intergenic Intergenic -13897 ENSMUSG00000111008.1 ENSMUSG00000111008 ENSMUST00000213973 Gm31562 lincRNA Interval_104853 chr3 75955978 75957485 + 0 NA promoter-TSS (ENSMUSG00000034109.15) protein_coding-promoter-TSS (ENSMUSG00000034109.15) 200 ENSMUSG00000034109.15 ENSMUSG00000034109 ENSMUST00000192433 Golim4 protein_coding Interval_70642 chr17 12740380 12742947 + 0 NA intron (ENSMUSG00000078247.5, intron 1 of 2) protein_coding-intron (ENSMUSG00000023830.14, intron 2 of 47) -28968 ENSMUSG00000089525.1 ENSMUSG00000089525 ENSMUST00000158900 Gm23833 misc_RNA Interval_29654 chr11 85841529 85842272 + 0 NA TTS (ENSMUSG00000000093.6) protein_coding-TTS (ENSMUSG00000000093.6) 8433 ENSMUSG00000069785.4 ENSMUSG00000069785 ENSMUST00000146433 Gm11444 protein_coding Interval_119491 chr4 137908032 137908709 + 0 NA intron (ENSMUSG00000057530.14, intron 2 of 19) protein_coding-intron (ENSMUSG00000057530.14, intron 2 of 19) -5101 ENSMUSG00000057530.14 ENSMUSG00000057530 ENSMUST00000129607 Ece1 protein_coding Interval_25171 chr11 44746396 44747528 + 0 NA intron (ENSMUSG00000057098.14, intron 6 of 15) protein_coding-intron (ENSMUSG00000057098.14, intron 6 of 15) -84286 ENSMUSG00000085784.1 ENSMUSG00000085784 ENSMUST00000130493 Gm12158 antisense Interval_83783 chr19 4697707 4699110 + 0 NA promoter-TSS (ENSMUSG00000071691.11) protein_coding-promoter-TSS (ENSMUSG00000071691.11) 18293 ENSMUSG00000117746.1 ENSMUSG00000117746 ENSMUST00000236726 Gm50372 processed_pseudogene Interval_9050 chr1 153287189 153289057 + 0 NA promoter-TSS (ENSMUSG00000103818.1) TEC-promoter-TSS (ENSMUSG00000103818.1) -933 ENSMUSG00000103818.1 ENSMUSG00000103818 ENSMUST00000194884 Gm38009 TEC Interval_118888 chr4 134273184 134274233 + 0 NA Intergenic Intergenic 13517 ENSMUSG00000050890.15 ENSMUSG00000050890 ENSMUST00000142504 Pdik1l protein_coding Interval_135906 chr6 48593356 48594818 + 0 NA promoter-TSS (ENSMUSG00000052751.16) protein_coding-promoter-TSS (ENSMUSG00000052751.16) 146 ENSMUSG00000107789.1 ENSMUSG00000107789 ENSMUST00000204121 Gm44965 protein_coding Interval_93773 chr2 76767236 76767526 + 0 NA exon (ENSMUSG00000051747.15, exon 132 of 191) protein_coding-exon (ENSMUSG00000051747.15, exon 132 of 191) 44605 ENSMUSG00000086354.2 ENSMUSG00000086354 ENSMUST00000156809 Gm13938 antisense Interval_64654 chr16 13928991 13930542 + 0 NA intron (ENSMUSG00000022679.13, intron 1 of 3) protein_coding-intron (ENSMUSG00000022679.13, intron 1 of 3) -8367 ENSMUSG00000089818.1 ENSMUSG00000089818 ENSMUST00000162902 Gm15950 unprocessed_pseudogene Interval_146228 chr7 44854296 44855171 + 0 NA TTS (ENSMUSG00000011096.17) protein_coding-TTS (ENSMUSG00000011096.17) -3763 ENSMUSG00000002963.17 ENSMUSG00000002963 ENSMUST00000144669 Pnkp protein_coding Interval_140662 chr6 120363244 120365017 + 0 NA promoter-TSS (ENSMUSG00000030180.15) protein_coding-promoter-TSS (ENSMUSG00000030180.15) -6763 ENSMUSG00000030177.14 ENSMUSG00000030177 ENSMUST00000153435 Ccdc77 protein_coding Interval_85285 chr19 24373454 24373931 + 0 NA intron (ENSMUSG00000024867.14, intron 7 of 13) protein_coding-intron (ENSMUSG00000024867.14, intron 7 of 14) -42317 ENSMUSG00000085003.1 ENSMUSG00000085003 ENSMUST00000126936 Pip5k1bos antisense Interval_168793 chr9 87143862 87145694 + 0 NA intron (ENSMUSG00000042761.14, intron 2 of 4) protein_coding-intron (ENSMUSG00000042761.14, intron 1 of 3) 435 ENSMUSG00000042761.14 ENSMUSG00000042761 ENSMUST00000179313 Mrap2 protein_coding Interval_141178 chr6 125432680 125434257 + 0 NA Intergenic Intergenic 29556 ENSMUSG00000030342.8 ENSMUSG00000030342 ENSMUST00000140024 Cd9 protein_coding Interval_84563 chr19 12765529 12765699 + 0 NA promoter-TSS (ENSMUSG00000079415.2) protein_coding-promoter-TSS (ENSMUSG00000079415.2) 18 ENSMUSG00000079415.2 ENSMUSG00000079415 ENSMUST00000112933 Cntf protein_coding Interval_89198 chr2 18001701 18002865 + 0 NA Intergenic Intergenic -3778 ENSMUSG00000081116.1 ENSMUSG00000081116 ENSMUST00000117063 Gm13329 processed_pseudogene Interval_105057 chr3 80622340 80622577 + 0 NA Intergenic Intergenic 69855 ENSMUSG00000093226.1 ENSMUSG00000093226 ENSMUST00000175485 Gm25749 miRNA Interval_160860 chr8 114073697 114074530 + 0 NA Intergenic Intergenic -59528 ENSMUSG00000031767.13 ENSMUSG00000031767 ENSMUST00000134593 Nudt7 protein_coding Interval_2734 chr1 44009825 44010111 + 0 NA TTS (ENSMUSG00000047343.4) protein_coding-TTS (ENSMUSG00000047343.4) 7500 ENSMUSG00000047343.4 ENSMUSG00000047343 ENSMUST00000159881 Mettl21c protein_coding Interval_9435 chr1 157079257 157080053 + 0 NA Intergenic Intergenic -25621 ENSMUSG00000101768.1 ENSMUSG00000101768 ENSMUST00000190681 Gm28694 lincRNA Interval_125329 chr5 66222883 66223638 + 0 NA Intergenic Intergenic 8513 ENSMUSG00000107125.1 ENSMUSG00000107125 ENSMUST00000201941 Gm3822 TEC Interval_54663 chr14 73098157 73099338 + 0 NA Intergenic Intergenic -44116 ENSMUSG00000022106.14 ENSMUSG00000022106 ENSMUST00000170278 Rcbtb2 protein_coding Interval_137511 chr6 72824826 72825691 + 0 NA Intergenic Intergenic 70661 ENSMUSG00000107610.1 ENSMUSG00000107610 ENSMUST00000205107 D530018E20Rik TEC Interval_160540 chr8 110508242 110508960 + 0 NA intron (ENSMUSG00000059854.8, intron 36 of 86) protein_coding-intron (ENSMUSG00000059854.8, intron 36 of 86) 9616 ENSMUSG00000105131.1 ENSMUSG00000105131 ENSMUST00000197243 Gm47306 miRNA Interval_36757 chr12 53144771 53145078 + 0 NA intron (ENSMUSG00000061603.8, intron 13 of 13) protein_coding-intron (ENSMUSG00000061603.8, intron 13 of 13) -98098 ENSMUSG00000070192.1 ENSMUSG00000070192 ENSMUST00000093682 n-R5s58 rRNA Interval_155533 chr8 34140497 34141439 + 0 NA intron (ENSMUSG00000031513.8, intron 1 of 3) protein_coding-intron (ENSMUSG00000031513.8, intron 1 of 3) 6065 ENSMUSG00000031513.8 ENSMUSG00000031513 ENSMUST00000033910 Leprotl1 protein_coding Interval_72324 chr17 29211391 29212360 + 0 NA intron (ENSMUSG00000024008.16, intron 3 of 13) protein_coding-intron (ENSMUSG00000024008.16, intron 3 of 20) -11421 ENSMUSG00000117610.1 ENSMUSG00000117610 ENSMUST00000235091 Gm50054 TEC Interval_114976 chr4 87957223 87957428 + 0 NA intron (ENSMUSG00000028496.17, intron 2 of 4) protein_coding-intron (ENSMUSG00000028496.17, intron 2 of 10) -76176 ENSMUSG00000084809.1 ENSMUSG00000084809 ENSMUST00000130576 Gm12631 antisense Interval_143550 chr7 12610138 12610478 + 0 NA Intergenic Intergenic -1520 ENSMUSG00000096002.2 ENSMUSG00000096002 ENSMUST00000170412 Vmn2r53 protein_coding Interval_83811 chr19 4821096 4821441 + 0 NA Intergenic Intergenic -9756 ENSMUSG00000006456.10 ENSMUSG00000006456 ENSMUST00000180008 Rbm14 protein_coding Interval_165527 chr9 49036517 49036962 + 0 NA promoter-TSS (ENSMUSG00000032267.8) protein_coding-promoter-TSS (ENSMUSG00000032267.8) -937 ENSMUSG00000032267.8 ENSMUSG00000032267 ENSMUST00000216657 Usp28 protein_coding Interval_128887 chr5 115891190 115891503 + 0 NA intron (ENSMUSG00000029516.19, intron 9 of 10) protein_coding-intron (ENSMUSG00000029516.19, intron 8 of 46) 4928 ENSMUSG00000029516.19 ENSMUSG00000029516 ENSMUST00000134609 Cit protein_coding Interval_110940 chr4 10622623 10623008 + 0 NA intron (ENSMUSG00000086080.7, intron 1 of 3) lincRNA-intron (ENSMUSG00000086080.7, intron 1 of 3) 42003 ENSMUSG00000081361.1 ENSMUSG00000081361 ENSMUST00000118586 Gm11813 processed_pseudogene Interval_170606 chr9 109218409 109218943 + 0 NA intron (ENSMUSG00000061701.11, intron 9 of 9) protein_coding-intron (ENSMUSG00000061701.11, intron 9 of 9) 16057 ENSMUSG00000061701.11 ENSMUSG00000061701 ENSMUST00000197329 Fbxw20 protein_coding Interval_166534 chr9 60693686 60694318 + 0 NA Intergenic Intergenic -6468 ENSMUSG00000047766.15 ENSMUSG00000047766 ENSMUST00000132366 Lrrc49 protein_coding Interval_146777 chr7 50579423 50580788 + 0 NA intron (ENSMUSG00000055409.14, intron 14 of 18) protein_coding-intron (ENSMUSG00000055409.14, intron 14 of 19) -4134 ENSMUSG00000085265.1 ENSMUSG00000085265 ENSMUST00000136672 Nell1os antisense Interval_136826 chr6 61039970 61040448 + 0 NA Intergenic Intergenic 4784 ENSMUSG00000108299.1 ENSMUSG00000108299 ENSMUST00000204373 Gm43892 unprocessed_pseudogene Interval_7242 chr1 128169618 128169856 + 0 NA intron (ENSMUSG00000056211.13, intron 5 of 11) protein_coding-intron (ENSMUSG00000056211.13, intron 7 of 26) -4956 ENSMUSG00000056211.13 ENSMUSG00000056211 ENSMUST00000188570 R3hdm1 protein_coding Interval_50296 chr14 11714691 11714976 + 0 NA intron (ENSMUSG00000021745.14, intron 1 of 3) protein_coding-intron (ENSMUSG00000021745.14, intron 1 of 29) -53110 ENSMUSG00000114310.1 ENSMUSG00000114310 ENSMUST00000225152 Gm48602 TEC Interval_33549 chr11 117146972 117147715 + 0 NA intron (ENSMUSG00000020823.16, intron 8 of 11) protein_coding-intron (ENSMUSG00000020823.16, intron 8 of 16) -7726 ENSMUSG00000020823.16 ENSMUSG00000020823 ENSMUST00000153437 Sec14l1 protein_coding Interval_1205 chr1 17091510 17092057 + 0 NA TTS (ENSMUSG00000101640.1) antisense-TTS (ENSMUSG00000101640.1) -32964 ENSMUSG00000100110.1 ENSMUSG00000100110 ENSMUST00000188872 Gm28783 lincRNA Interval_96235 chr2 120774420 120774671 + 0 NA intron (ENSMUSG00000027284.16, intron 7 of 40) protein_coding-intron (ENSMUSG00000090100.7, intron 8 of 15) -45907 ENSMUSG00000027284.16 ENSMUSG00000027284 ENSMUST00000136725 Cdan1 protein_coding Interval_165828 chr9 53625056 53625688 + 0 NA intron (ENSMUSG00000032030.16, intron 12 of 17) protein_coding-intron (ENSMUSG00000032030.16, intron 13 of 18) -14605 ENSMUSG00000064622.1 ENSMUSG00000064622 ENSMUST00000082688 Gm22304 snoRNA Interval_94094 chr2 83812336 83813407 + 0 NA exon (ENSMUSG00000048388.3, exon 1 of 8) protein_coding-exon (ENSMUSG00000048388.3, exon 1 of 8) -45217 ENSMUSG00000048388.3 ENSMUSG00000048388 ENSMUST00000148184 Fam171b protein_coding Interval_22307 chr11 8649395 8649866 + 0 NA intron (ENSMUSG00000020422.14, intron 1 of 30) protein_coding-intron (ENSMUSG00000020422.14, intron 1 of 30) 15051 ENSMUSG00000020422.14 ENSMUSG00000020422 ENSMUST00000134823 Tns3 protein_coding Interval_173088 chrX 71300432 71301212 + 0 NA promoter-TSS (ENSMUSG00000031337.16) protein_coding-promoter-TSS (ENSMUSG00000031337.16) -68990 ENSMUSG00000015214.14 ENSMUSG00000015214 ENSMUST00000130179 Mtmr1 protein_coding Interval_515 chr1 6870310 6870669 + 0 NA Intergenic Intergenic -6338 ENSMUSG00000103329.2 ENSMUSG00000103329 ENSMUST00000195780 Gm42492 TEC Interval_157725 chr8 72534135 72534434 + 0 NA intron (ENSMUSG00000045248.6, intron 1 of 2) protein_coding-intron (ENSMUSG00000045248.6, intron 1 of 2) 3253 ENSMUSG00000110532.1 ENSMUSG00000110532 ENSMUST00000212739 Gm35857 processed_pseudogene Interval_127898 chr5 108703363 108704441 + 0 NA TTS (ENSMUSG00000008090.14) protein_coding-TTS (ENSMUSG00000008090.14) -1172 ENSMUSG00000008090.14 ENSMUSG00000008090 ENSMUST00000199802 Fgfrl1 protein_coding Interval_109015 chr3 135079494 135079702 + 0 NA Intergenic Intergenic -42263 ENSMUSG00000105538.1 ENSMUSG00000105538 ENSMUST00000197899 Gm2142 processed_pseudogene Interval_95714 chr2 114626162 114626395 + 0 NA intron (ENSMUSG00000057147.13, intron 3 of 6) protein_coding-intron (ENSMUSG00000057147.13, intron 3 of 7) -28147 ENSMUSG00000084785.1 ENSMUSG00000084785 ENSMUST00000153726 Gm13972 processed_transcript Interval_2621 chr1 42436431 42437291 + 0 NA Intergenic Intergenic -54952 ENSMUSG00000103106.1 ENSMUSG00000103106 ENSMUST00000191992 Gm37047 TEC Interval_14517 chr10 34633782 34634417 + 0 NA Intergenic Intergenic 150567 ENSMUSG00000019779.15 ENSMUSG00000019779 ENSMUST00000215594 Frk protein_coding Interval_34877 chr12 12904234 12905138 + 0 NA exon (ENSMUSG00000097627.2, exon 1 of 2) lincRNA-exon (ENSMUSG00000097627.2, exon 1 of 2) 136 ENSMUSG00000097627.2 ENSMUSG00000097627 ENSMUST00000221053 4930519A11Rik lincRNA Interval_87875 chr19 56763965 56764150 + 0 NA Intergenic Intergenic -8711 ENSMUSG00000067063.1 ENSMUSG00000067063 ENSMUST00000086830 Gm6990 processed_pseudogene Interval_169901 chr9 102834544 102835793 + 0 NA exon (ENSMUSG00000032547.12, exon 1 of 15) protein_coding-exon (ENSMUSG00000032547.12, exon 1 of 15) -14218 ENSMUSG00000111395.1 ENSMUSG00000111395 ENSMUST00000214802 Gm18655 processed_pseudogene Interval_19223 chr10 95595543 95596632 + 0 NA Intergenic Intergenic -7705 ENSMUSG00000089618.1 ENSMUSG00000089618 ENSMUST00000158993 Gm23776 misc_RNA Interval_144597 chr7 26766947 26767708 + 0 NA intron (ENSMUSG00000066704.6, intron 2 of 2) protein_coding-intron (ENSMUSG00000066704.6, intron 8 of 8) 772 ENSMUSG00000066704.6 ENSMUSG00000066704 ENSMUST00000138018 Cyp2b19 protein_coding Interval_57280 chr15 8384698 8384892 + 0 NA intron (ENSMUSG00000022141.7, intron 1 of 46) protein_coding-intron (ENSMUSG00000022141.7, intron 1 of 46) 59668 ENSMUSG00000022141.7 ENSMUSG00000022141 ENSMUST00000052965 Nipbl protein_coding Interval_33224 chr11 115329165 115329685 + 0 NA exon (ENSMUSG00000050201.9, exon 7 of 8) protein_coding-exon (ENSMUSG00000050201.9, exon 7 of 8) -5306 ENSMUSG00000018862.11 ENSMUSG00000018862 ENSMUST00000019006 Otop3 protein_coding Interval_78724 chr18 19424207 19424373 + 0 NA Intergenic Intergenic -52492 ENSMUSG00000117636.1 ENSMUSG00000117636 ENSMUST00000234485 Gm38432 processed_pseudogene Interval_81456 chr18 60858543 60860249 + 0 NA Intergenic Intergenic -10950 ENSMUSG00000024613.16 ENSMUSG00000024613 ENSMUST00000177343 Tcof1 protein_coding Interval_2694 chr1 43491271 43491671 + 0 NA TTS (ENSMUSG00000103422.1) TEC-TTS (ENSMUSG00000103422.1) 3024 ENSMUSG00000103422.1 ENSMUSG00000103422 ENSMUST00000194710 Gm37536 TEC Interval_127665 chr5 106426025 106426555 + 0 NA Intergenic Intergenic 31876 ENSMUSG00000034384.11 ENSMUSG00000034384 ENSMUST00000086795 Barhl2 protein_coding Interval_79025 chr18 24026612 24027130 + 0 NA Intergenic Intergenic -6551 ENSMUSG00000051469.14 ENSMUSG00000051469 ENSMUST00000148525 Zfp24 protein_coding Interval_163233 chr9 18860480 18860784 + 0 NA Intergenic Intergenic 5699 ENSMUSG00000051414.5 ENSMUSG00000051414 ENSMUST00000058411 Olfr829 protein_coding Interval_131327 chr5 136490293 136490721 + 0 NA intron (ENSMUSG00000029705.17, intron 1 of 1) protein_coding-intron (ENSMUSG00000029705.17, intron 1 of 23) 45970 ENSMUSG00000104369.1 ENSMUSG00000104369 ENSMUST00000192800 Gm38082 TEC Interval_104290 chr3 62919167 62920213 + 0 NA Intergenic Intergenic 4543 ENSMUSG00000063001.10 ENSMUSG00000063001 ENSMUST00000077976 Gm9701 processed_pseudogene Interval_81306 chr18 57785860 57786626 + 0 NA intron (ENSMUSG00000118391.1, intron 1 of 5) antisense-intron (ENSMUSG00000118391.1, intron 1 of 2) 6117 ENSMUSG00000118391.1 ENSMUSG00000118391 ENSMUST00000236807 Gm19519 antisense Interval_161252 chr8 119245102 119246721 + 0 NA intron (ENSMUSG00000031841.19, intron 10 of 13) protein_coding-intron (ENSMUSG00000031841.19, intron 10 of 13) 94446 ENSMUSG00000031841.19 ENSMUSG00000031841 ENSMUST00000151842 Cdh13 protein_coding Interval_70772 chr17 14349149 14349455 + 0 NA intron (ENSMUSG00000023886.10, intron 7 of 12) protein_coding-intron (ENSMUSG00000023886.10, intron 7 of 12) 49640 ENSMUSG00000117328.1 ENSMUSG00000117328 ENSMUST00000233310 4930474M22Rik antisense Interval_128332 chr5 112586119 112586663 + 0 NA exon (ENSMUSG00000097962.7, exon 2 of 5) lincRNA-exon (ENSMUSG00000097962.7, exon 2 of 5) 3605 ENSMUSG00000097962.7 ENSMUSG00000097962 ENSMUST00000182949 1700034G24Rik lincRNA Interval_76668 chr17 83335041 83335540 + 0 NA Intergenic Intergenic 46744 ENSMUSG00000094256.2 ENSMUSG00000094256 ENSMUST00000077420 Rpl21-ps7 processed_pseudogene Interval_136741 chr6 58879292 58880863 + 0 NA intron (ENSMUSG00000029804.17, intron 15 of 24) protein_coding-intron (ENSMUSG00000029804.17, intron 15 of 22) -21671 ENSMUSG00000029804.17 ENSMUSG00000029804 ENSMUST00000131132 Herc3 protein_coding Interval_133562 chr6 6855912 6856116 + 0 NA exon (ENSMUSG00000107967.1, exon 1 of 1) TEC-exon (ENSMUSG00000107967.1, exon 1 of 1) 237 ENSMUSG00000107967.1 ENSMUSG00000107967 ENSMUST00000204703 Gm44094 TEC Interval_30592 chr11 95295386 95296552 + 0 NA intron (ENSMUSG00000038909.16, intron 4 of 14) protein_coding-intron (ENSMUSG00000038909.16, intron 4 of 13) 13544 ENSMUSG00000038909.16 ENSMUSG00000038909 ENSMUST00000143171 Kat7 protein_coding Interval_79962 chr18 36299514 36300197 + 0 NA exon (ENSMUSG00000110185.2, exon 1 of 1) protein_coding-exon (ENSMUSG00000110185.2, exon 1 of 1) 1176 ENSMUSG00000110185.2 ENSMUSG00000110185 ENSMUST00000210490 Igip protein_coding Interval_105100 chr3 81195662 81195865 + 0 NA intron (ENSMUSG00000028019.9, intron 4 of 5) protein_coding-intron (ENSMUSG00000028019.9, intron 3 of 5) -155326 ENSMUSG00000085106.1 ENSMUSG00000085106 ENSMUST00000146657 Gm16000 antisense Interval_20070 chr10 113161651 113161845 + 0 NA Intergenic Intergenic 48359 ENSMUSG00000112228.1 ENSMUSG00000112228 ENSMUST00000220016 Gm47524 lincRNA Interval_149573 chr7 99710482 99710722 + 0 NA intron (ENSMUSG00000109559.1, intron 4 of 4) protein_coding-intron (ENSMUSG00000030737.17, intron 1 of 13) 14776 ENSMUSG00000108965.1 ENSMUSG00000108965 ENSMUST00000208804 Gm44551 processed_pseudogene Interval_15787 chr10 56602707 56603082 + 0 NA Intergenic Intergenic -53300 ENSMUSG00000045048.7 ENSMUSG00000045048 ENSMUST00000062156 Gm9795 processed_pseudogene Interval_156969 chr8 63081131 63081374 + 0 NA intron (ENSMUSG00000054162.15, intron 2 of 10) protein_coding-intron (ENSMUSG00000054162.15, intron 1 of 10) 27555 ENSMUSG00000088419.1 ENSMUSG00000088419 ENSMUST00000157794 Gm24236 snoRNA Interval_168900 chr9 88473201 88473429 + 0 NA intron (ENSMUSG00000032423.12, intron 3 of 3) protein_coding-intron (ENSMUSG00000032423.12, intron 6 of 11) 7909 ENSMUSG00000032423.12 ENSMUSG00000032423 ENSMUST00000172508 Syncrip protein_coding Interval_85954 chr19 34191844 34193367 + 0 NA promoter-TSS (ENSMUSG00000024776.18) protein_coding-promoter-TSS (ENSMUSG00000024776.18) 376 ENSMUSG00000024776.18 ENSMUSG00000024776 ENSMUST00000130756 Stambpl1 protein_coding Interval_137014 chr6 66401663 66402202 + 0 NA Intergenic Intergenic 3186 ENSMUSG00000107631.1 ENSMUSG00000107631 ENSMUST00000203616 Gm44233 processed_pseudogene Interval_109203 chr3 137867092 137868343 + 0 NA promoter-TSS (ENSMUSG00000074212.7) protein_coding-promoter-TSS (ENSMUSG00000074212.7) -449 ENSMUSG00000074212.7 ENSMUSG00000074212 ENSMUST00000195903 Dnajb14 protein_coding Interval_55265 chr14 79792117 79792979 + 0 NA Intergenic Intergenic -21236 ENSMUSG00000036422.10 ENSMUSG00000036422 ENSMUST00000194214 Pcdh8 protein_coding Interval_173626 chrX 101253795 101255589 + 0 NA promoter-TSS (ENSMUSG00000042903.8) protein_coding-promoter-TSS (ENSMUSG00000042903.8) 125 ENSMUSG00000042903.8 ENSMUSG00000042903 ENSMUST00000138437 Foxo4 protein_coding Interval_38076 chr12 75518340 75521111 + 0 NA intron (ENSMUSG00000021051.10, intron 2 of 12) protein_coding-intron (ENSMUSG00000021051.10, intron 2 of 13) -10980 ENSMUSG00000112254.1 ENSMUSG00000112254 ENSMUST00000218033 Gm47690 TEC Interval_66424 chr16 33775018 33775278 + 0 NA intron (ENSMUSG00000090214.8, intron 2 of 2) antisense-intron (ENSMUSG00000090214.8, intron 2 of 2) -18889 ENSMUSG00000022824.12 ENSMUSG00000022824 ENSMUST00000023520 Muc13 protein_coding Interval_85255 chr19 24185379 24185585 + 0 NA intron (ENSMUSG00000024812.11, intron 1 of 22) protein_coding-intron (ENSMUSG00000024812.11, intron 1 of 22) 31412 ENSMUSG00000118371.1 ENSMUSG00000118371 ENSMUST00000237530 Gm50308 processed_pseudogene Interval_143158 chr7 3914358 3914566 + 0 NA exon (ENSMUSG00000030427.17, exon 4 of 9) protein_coding-exon (ENSMUSG00000030427.17, exon 4 of 9) 1023 ENSMUSG00000030427.17 ENSMUSG00000030427 ENSMUST00000090689 Lilra6 protein_coding Interval_155113 chr8 26676141 26676354 + 0 NA Intergenic Intergenic -7941 ENSMUSG00000109680.1 ENSMUSG00000109680 ENSMUST00000211305 Gm32098 lincRNA Interval_49979 chr13 119258286 119259223 + 0 NA Intergenic Intergenic 10850 ENSMUSG00000105411.1 ENSMUSG00000105411 ENSMUST00000199467 Gm44488 miRNA Interval_31099 chr11 98128535 98129523 + 0 NA promoter-TSS (ENSMUSG00000020883.18) protein_coding-promoter-TSS (ENSMUSG00000020883.18) 21374 ENSMUSG00000020883.18 ENSMUSG00000020883 ENSMUST00000148473 Fbxl20 protein_coding Interval_91242 chr2 36276448 36277009 + 0 NA Intergenic Intergenic -8295 ENSMUSG00000083034.2 ENSMUSG00000083034 ENSMUST00000121252 Olfr334-ps1 unprocessed_pseudogene Interval_4838 chr1 80153279 80153500 + 0 NA Intergenic Intergenic -4588 ENSMUSG00000102518.1 ENSMUSG00000102518 ENSMUST00000195479 Gm38339 TEC Interval_16729 chr10 67673454 67674008 + 0 NA Intergenic Intergenic 8372 ENSMUSG00000112097.1 ENSMUSG00000112097 ENSMUST00000219396 Gm32515 lincRNA Interval_58960 chr15 40953824 40956095 + 0 NA intron (ENSMUSG00000022306.9, intron 5 of 7) protein_coding-intron (ENSMUSG00000022306.9, intron 5 of 7) -4798 ENSMUSG00000115975.1 ENSMUSG00000115975 ENSMUST00000229850 Gm49526 TEC Interval_70670 chr17 12940027 12940936 + 0 NA promoter-TSS (ENSMUSG00000062480.12) protein_coding-promoter-TSS (ENSMUSG00000062480.12) -12799 ENSMUSG00000062480.12 ENSMUSG00000062480 ENSMUST00000160921 Acat3 protein_coding Interval_154427 chr8 16246262 16247059 + 0 NA intron (ENSMUSG00000060924.15, intron 12 of 33) protein_coding-intron (ENSMUSG00000060924.15, intron 12 of 69) 20657 ENSMUSG00000085150.1 ENSMUSG00000085150 ENSMUST00000129158 Gm16346 antisense Interval_165999 chr9 55308013 55308240 + 0 NA intron (ENSMUSG00000032311.17, intron 4 of 4) protein_coding-intron (ENSMUSG00000032311.17, intron 2 of 8) 2838 ENSMUSG00000082744.1 ENSMUSG00000082744 ENSMUST00000117617 Gm15625 processed_pseudogene Interval_120978 chr4 152032404 152033356 + 0 NA intron (ENSMUSG00000028950.3, intron 2 of 5) protein_coding-intron (ENSMUSG00000028950.3, intron 2 of 5) 5688 ENSMUSG00000028950.3 ENSMUSG00000028950 ENSMUST00000030792 Tas1r1 protein_coding Interval_53093 chr14 54415473 54415953 + 0 NA intron (ENSMUSG00000000958.10, intron 2 of 11) protein_coding-intron (ENSMUSG00000000958.10, intron 2 of 3) -5511 ENSMUSG00000000958.10 ENSMUSG00000000958 ENSMUST00000195999 Slc7a7 protein_coding Interval_30084 chr11 89067396 89069549 + 0 NA TTS (ENSMUSG00000063109.13) antisense-TTS (ENSMUSG00000063109.13) 3743 ENSMUSG00000063109.13 ENSMUSG00000063109 ENSMUST00000139194 Dgkeos antisense Interval_54588 chr14 70865167 70865602 + 0 NA intron (ENSMUSG00000099528.1, intron 2 of 3) lincRNA-intron (ENSMUSG00000099528.1, intron 2 of 3) 12451 ENSMUSG00000099528.1 ENSMUSG00000099528 ENSMUST00000190896 2410012E07Rik lincRNA Interval_98036 chr2 147013071 147014378 + 0 NA intron (ENSMUSG00000027433.5, intron 1 of 29) protein_coding-intron (ENSMUSG00000027433.5, intron 1 of 29) -15828 ENSMUSG00000027433.5 ENSMUSG00000027433 ENSMUST00000137358 Xrn2 protein_coding Interval_125496 chr5 67650827 67651175 + 0 NA intron (ENSMUSG00000037685.15, intron 28 of 33) protein_coding-intron (ENSMUSG00000037685.15, intron 31 of 36) 8600 ENSMUSG00000085363.1 ENSMUSG00000085363 ENSMUST00000145914 Gm15478 antisense Interval_16023 chr10 60174849 60176235 + 0 NA Intergenic Intergenic 18697 ENSMUSG00000057337.13 ENSMUSG00000057337 ENSMUST00000167915 Chst3 protein_coding Interval_93617 chr2 75000429 75000757 + 0 NA Intergenic Intergenic -65079 ENSMUSG00000084574.1 ENSMUSG00000084574 ENSMUST00000122625 n-R5s198 rRNA Interval_169227 chr9 95655408 95655655 + 0 NA intron (ENSMUSG00000015354.8, intron 2 of 8) protein_coding-intron (ENSMUSG00000015354.8, intron 2 of 8) -7060 ENSMUSG00000086585.1 ENSMUSG00000086585 ENSMUST00000126025 Gm16126 antisense Interval_105504 chr3 87107144 87107466 + 0 NA intron (ENSMUSG00000041734.15, intron 2 of 15) protein_coding-intron (ENSMUSG00000041734.15, intron 2 of 13) 40412 ENSMUSG00000077672.1 ENSMUSG00000077672 ENSMUST00000104484 Gm24472 snoRNA Interval_167117 chr9 65447938 65448371 + 0 NA TTS (ENSMUSG00000059183.12) protein_coding-TTS (ENSMUSG00000059183.12) -5461 ENSMUSG00000111722.1 ENSMUSG00000111722 ENSMUST00000214308 Gm47270 lincRNA Interval_164347 chr9 35558109 35560018 + 0 NA promoter-TSS (ENSMUSG00000032101.6) protein_coding-promoter-TSS (ENSMUSG00000032101.6) 468 ENSMUSG00000032103.10 ENSMUSG00000032103 ENSMUST00000121246 Pus3 protein_coding Interval_151946 chr7 127699129 127699350 + 0 NA intron (ENSMUSG00000108801.1, intron 4 of 4) protein_coding-intron (ENSMUSG00000030814.17, intron 4 of 4) 7304 ENSMUSG00000108801.1 ENSMUSG00000108801 ENSMUST00000205284 Gm39090 lincRNA Interval_83211 chr18 82787233 82787870 + 0 NA Intergenic Intergenic -28510 ENSMUSG00000101773.1 ENSMUSG00000101773 ENSMUST00000188435 2210420H20Rik lincRNA Interval_74664 chr17 55765410 55765668 + 0 NA intron (ENSMUSG00000032915.6, intron 2 of 16) protein_coding-intron (ENSMUSG00000032915.6, intron 2 of 16) 2932 ENSMUSG00000117045.1 ENSMUSG00000117045 ENSMUST00000233119 Gm18365 processed_pseudogene Interval_154239 chr8 13669616 13670250 + 0 NA intron (ENSMUSG00000031453.16, intron 1 of 6) protein_coding-intron (ENSMUSG00000031453.16, intron 1 of 23) 7518 ENSMUSG00000031453.16 ENSMUSG00000031453 ENSMUST00000132439 Rasa3 protein_coding Interval_36111 chr12 35969410 35969611 + 0 NA Intergenic Intergenic -23397 ENSMUSG00000020581.11 ENSMUSG00000020581 ENSMUST00000020898 Agr2 protein_coding Interval_114149 chr4 64979659 64980308 + 0 NA Intergenic Intergenic -31247 ENSMUSG00000080805.1 ENSMUSG00000080805 ENSMUST00000118565 Gm11219 processed_pseudogene Interval_80579 chr18 44400331 44400953 + 0 NA intron (ENSMUSG00000024472.9, intron 4 of 10) protein_coding-intron (ENSMUSG00000024472.9, intron 4 of 10) 20140 ENSMUSG00000024472.9 ENSMUSG00000024472 ENSMUST00000025350 Dcp2 protein_coding Interval_140157 chr6 114924983 114925525 + 0 NA intron (ENSMUSG00000030315.15, intron 2 of 5) protein_coding-intron (ENSMUSG00000030315.15, intron 2 of 4) -3438 ENSMUSG00000030315.15 ENSMUSG00000030315 ENSMUST00000204693 Vgll4 protein_coding Interval_33042 chr11 113832846 113833363 + 0 NA intron (ENSMUSG00000041592.16, intron 26 of 44) protein_coding-intron (ENSMUSG00000041592.16, intron 26 of 44) -22681 ENSMUSG00000041592.16 ENSMUSG00000041592 ENSMUST00000144301 Sdk2 protein_coding Interval_148725 chr7 84679163 84679949 + 0 NA promoter-TSS (ENSMUSG00000030629.15) protein_coding-promoter-TSS (ENSMUSG00000030629.15) 10327 ENSMUSG00000030629.15 ENSMUSG00000030629 ENSMUST00000207975 Zfand6 protein_coding Interval_73644 chr17 42269155 42269531 + 0 NA Intergenic Intergenic -46646 ENSMUSG00000042256.5 ENSMUSG00000042256 ENSMUST00000232968 Ptchd4 protein_coding Interval_74047 chr17 46258504 46258775 + 0 NA exon (ENSMUSG00000012296.16, exon 10 of 10) protein_coding-exon (ENSMUSG00000012296.16, exon 10 of 10) 5108 ENSMUSG00000071073.5 ENSMUSG00000071073 ENSMUST00000095262 Lrrc73 protein_coding Interval_74343 chr17 49182442 49183116 + 0 NA Intergenic Intergenic -17021 ENSMUSG00000117115.1 ENSMUSG00000117115 ENSMUST00000233339 Gm9586 processed_pseudogene Interval_156879 chr8 61404536 61405381 + 0 NA Intergenic Intergenic -23571 ENSMUSG00000109610.1 ENSMUSG00000109610 ENSMUST00000210343 Gm7432 processed_pseudogene Interval_118891 chr4 134299035 134300500 + 0 NA Intergenic Intergenic -12542 ENSMUSG00000050890.15 ENSMUSG00000050890 ENSMUST00000142504 Pdik1l protein_coding Interval_108371 chr3 126261491 126261710 + 0 NA Intergenic Intergenic -16430 ENSMUSG00000106094.1 ENSMUSG00000106094 ENSMUST00000198264 Gm18916 processed_pseudogene Interval_96588 chr2 125975901 125976211 + 0 NA intron (ENSMUSG00000027207.15, intron 9 of 9) protein_coding-intron (ENSMUSG00000027207.15, intron 9 of 9) -58602 ENSMUSG00000027208.14 ENSMUSG00000027208 ENSMUST00000110442 Fgf7 protein_coding Interval_57505 chr15 11915431 11915676 + 0 NA Intergenic Intergenic 9034 ENSMUSG00000115240.1 ENSMUSG00000115240 ENSMUST00000227444 Gm5144 bidirectional_promoter_lncRNA Interval_140470 chr6 118503683 118503869 + 0 NA intron (ENSMUSG00000007827.10, intron 33 of 33) protein_coding-intron (ENSMUSG00000007827.10, intron 33 of 33) 17323 ENSMUSG00000118520.1 ENSMUSG00000118520 ENSMUST00000239020 AC140192.1 processed_pseudogene Interval_40206 chr12 102550676 102550960 + 0 NA Intergenic Intergenic -7250 ENSMUSG00000021194.6 ENSMUSG00000021194 ENSMUST00000223100 Chga protein_coding Interval_102603 chr3 28229492 28230208 + 0 NA Intergenic Intergenic -15673 ENSMUSG00000103729.1 ENSMUSG00000103729 ENSMUST00000192290 Gm37098 processed_pseudogene Interval_24205 chr11 31402906 31403629 + 0 NA Intergenic Intergenic -33220 ENSMUSG00000020303.2 ENSMUSG00000020303 ENSMUST00000134199 Stc2 protein_coding Interval_150135 chr7 107230797 107231112 + 0 NA Intergenic Intergenic -12068 ENSMUSG00000057215.6 ENSMUSG00000057215 ENSMUST00000133824 Platr28 lincRNA Interval_85144 chr19 23151678 23153921 + 0 NA intron (ENSMUSG00000033863.2, intron 1 of 1) protein_coding-intron (ENSMUSG00000033863.2, intron 1 of 1) 3368 ENSMUSG00000080626.1 ENSMUSG00000080626 ENSMUST00000116976 Mir1192 miRNA Interval_32296 chr11 106736679 106737706 + 0 NA intron (ENSMUSG00000020717.19, intron 1 of 15) protein_coding-intron (ENSMUSG00000020717.19, intron 1 of 15) -14073 ENSMUSG00000040528.15 ENSMUSG00000040528 ENSMUST00000182479 Milr1 protein_coding Interval_133955 chr6 16513630 16514403 + 0 NA Intergenic Intergenic -36371 ENSMUSG00000108025.1 ENSMUSG00000108025 ENSMUST00000204284 Gm36503 lincRNA Interval_121950 chr5 12209519 12210308 + 0 NA Intergenic Intergenic -64952 ENSMUSG00000105155.1 ENSMUSG00000105155 ENSMUST00000198917 Gm42910 TEC Interval_145546 chr7 35530080 35531336 + 0 NA intron (ENSMUSG00000030491.16, intron 1 of 29) protein_coding-intron (ENSMUSG00000030491.16, intron 1 of 11) 24486 ENSMUSG00000034875.5 ENSMUSG00000034875 ENSMUST00000123469 Nudt19 protein_coding Interval_85214 chr19 23860263 23860607 + 0 NA intron (ENSMUSG00000024897.9, intron 1 of 12) protein_coding-intron (ENSMUSG00000024897.9, intron 1 of 12) -44022 ENSMUSG00000024897.9 ENSMUSG00000024897 ENSMUST00000237688 Apba1 protein_coding Interval_113718 chr4 57833104 57833337 + 0 NA intron (ENSMUSG00000038729.24, intron 1 of 1) protein_coding-intron (ENSMUSG00000038729.24, intron 2 of 2) 12170 ENSMUSG00000038729.24 ENSMUSG00000038729 ENSMUST00000102902 Pakap protein_coding Interval_118109 chr4 129004484 129005025 + 0 NA intron (ENSMUSG00000028792.14, intron 5 of 6) protein_coding-intron (ENSMUSG00000028792.14, intron 4 of 5) 11401 ENSMUSG00000028792.14 ENSMUSG00000028792 ENSMUST00000152762 Ak2 protein_coding Interval_25300 chr11 46197370 46198125 + 0 NA intron (ENSMUSG00000020340.16, intron 30 of 30) protein_coding-intron (ENSMUSG00000020340.16, intron 30 of 30) 27660 ENSMUSG00000099331.1 ENSMUSG00000099331 ENSMUST00000183384 Mir7239 miRNA Interval_97003 chr2 130410990 130412226 + 0 NA Intergenic Intergenic 5130 ENSMUSG00000049692.7 ENSMUSG00000049692 ENSMUST00000055421 Tmem239 protein_coding Interval_104255 chr3 62203206 62203454 + 0 NA Intergenic Intergenic 80123 ENSMUSG00000103322.1 ENSMUSG00000103322 ENSMUST00000195726 Gm37404 TEC Interval_54638 chr14 72585661 72585951 + 0 NA intron (ENSMUSG00000033487.14, intron 3 of 23) protein_coding-intron (ENSMUSG00000033487.14, intron 5 of 25) -3946 ENSMUSG00000090216.1 ENSMUSG00000090216 ENSMUST00000160445 Gm16549 antisense Interval_169869 chr9 102643392 102644480 + 0 NA Intergenic Intergenic 15424 ENSMUSG00000035048.13 ENSMUSG00000035048 ENSMUST00000190354 Anapc13 protein_coding Interval_14657 chr10 38155708 38156022 + 0 NA Intergenic Intergenic -19915 ENSMUSG00000111234.1 ENSMUSG00000111234 ENSMUST00000215643 4930591E09Rik lincRNA Interval_51223 chr14 25270339 25270874 + 0 NA intron (ENSMUSG00000087535.2, intron 3 of 3) antisense-intron (ENSMUSG00000087535.2, intron 3 of 3) 109003 ENSMUSG00000097601.2 ENSMUSG00000097601 ENSMUST00000181582 Gm26660 lincRNA Interval_107256 chr3 105014390 105015469 + 0 NA intron (ENSMUSG00000062127.11, intron 3 of 4) protein_coding-intron (ENSMUSG00000062127.11, intron 3 of 5) 20897 ENSMUSG00000105355.1 ENSMUSG00000105355 ENSMUST00000198827 Gm40117 antisense Interval_136946 chr6 65021642 65023564 + 0 NA Intergenic Intergenic -20064 ENSMUSG00000029920.9 ENSMUSG00000029920 ENSMUST00000203104 Smarcad1 protein_coding Interval_145168 chr7 30421378 30423496 + 0 NA promoter-TSS (ENSMUSG00000036931.15) protein_coding-promoter-TSS (ENSMUSG00000036931.15) -2635 ENSMUSG00000064109.8 ENSMUSG00000064109 ENSMUST00000207504 Hcst protein_coding Interval_116823 chr4 117473301 117474484 + 0 NA intron (ENSMUSG00000028677.19, intron 2 of 2) protein_coding-intron (ENSMUSG00000028677.19, intron 2 of 14) -22560 ENSMUSG00000087228.1 ENSMUSG00000087228 ENSMUST00000132690 Gm12827 lincRNA Interval_19685 chr10 107951231 107951637 + 0 NA intron (ENSMUSG00000112910.1, intron 1 of 5) lincRNA-intron (ENSMUSG00000112910.1, intron 1 of 5) 4789 ENSMUSG00000112910.1 ENSMUSG00000112910 ENSMUST00000219670 Gm29685 lincRNA Interval_142639 chr6 144487215 144487473 + 0 NA intron (ENSMUSG00000087157.1, intron 2 of 3) protein_coding-intron (ENSMUSG00000041540.16, intron 3 of 13) 6119 ENSMUSG00000087157.1 ENSMUSG00000087157 ENSMUST00000156443 Sox5os2 antisense Interval_172694 chrX 42926926 42927249 + 0 NA intron (ENSMUSG00000016150.15, intron 6 of 9) protein_coding-intron (ENSMUSG00000016150.15, intron 5 of 32) -37967 ENSMUSG00000083098.1 ENSMUSG00000083098 ENSMUST00000122166 Gm14578 processed_pseudogene Interval_46324 chr13 63959415 63959952 + 0 NA Intergenic Intergenic -13162 ENSMUSG00000113340.1 ENSMUSG00000113340 ENSMUST00000220900 Gm7695 processed_pseudogene Interval_107049 chr3 103159552 103160056 + 0 NA intron (ENSMUSG00000007379.15, intron 10 of 14) protein_coding-intron (ENSMUSG00000007379.15, intron 14 of 18) 10640 ENSMUSG00000007379.15 ENSMUSG00000007379 ENSMUST00000174486 Dennd2c protein_coding Interval_119771 chr4 139850857 139852930 + 0 NA Intergenic Intergenic -18886 ENSMUSG00000028736.13 ENSMUSG00000028736 ENSMUST00000174681 Pax7 protein_coding Interval_163793 chr9 25895458 25895739 + 0 NA Intergenic Intergenic -35946 ENSMUSG00000110866.1 ENSMUSG00000110866 ENSMUST00000216055 Gm48362 lincRNA Interval_18801 chr10 90969120 90970336 + 0 NA TTS (ENSMUSG00000058589.14) protein_coding-TTS (ENSMUSG00000058589.14) -36013 ENSMUSG00000087966.1 ENSMUSG00000087966 ENSMUST00000157341 Gm25390 snRNA Interval_142952 chr6 147263124 147264625 + 0 NA exon (ENSMUSG00000048776.8, exon 1 of 4) protein_coding-exon (ENSMUSG00000048776.8, exon 1 of 4) 309 ENSMUSG00000048776.8 ENSMUSG00000048776 ENSMUST00000204197 Pthlh protein_coding Interval_75080 chr17 63075625 63076424 + 0 NA intron (ENSMUSG00000023965.13, intron 5 of 5) protein_coding-intron (ENSMUSG00000023965.13, intron 8 of 8) 20976 ENSMUSG00000089586.1 ENSMUSG00000089586 ENSMUST00000158961 Gm25348 rRNA Interval_88888 chr2 12138666 12139012 + 0 NA intron (ENSMUSG00000026768.10, intron 27 of 30) protein_coding-intron (ENSMUSG00000026768.10, intron 26 of 29) -9097 ENSMUSG00000104174.1 ENSMUSG00000104174 ENSMUST00000192947 Gm37701 TEC Interval_153206 chr7 142400603 142401262 + 0 NA Intergenic Intergenic -13113 ENSMUSG00000007891.16 ENSMUSG00000007891 ENSMUST00000153679 Ctsd protein_coding Interval_39324 chr12 86715155 86716004 + 0 NA TTS (ENSMUSG00000091942.1) processed_pseudogene-TTS (ENSMUSG00000091942.1) 593 ENSMUSG00000091942.1 ENSMUSG00000091942 ENSMUST00000165702 Gm17138 processed_pseudogene Interval_68155 chr16 65963733 65964900 + 0 NA Intergenic Intergenic 3091 ENSMUSG00000088181.1 ENSMUSG00000088181 ENSMUST00000157556 Gm22217 misc_RNA Interval_151291 chr7 120721978 120722221 + 0 NA intron (ENSMUSG00000046096.7, intron 1 of 2) protein_coding-intron (ENSMUSG00000046096.7, intron 1 of 2) -4077 ENSMUSG00000046096.7 ENSMUSG00000046096 ENSMUST00000208534 Mosmo protein_coding Interval_16298 chr10 62036451 62038071 + 0 NA Intergenic Intergenic 13857 ENSMUSG00000112018.1 ENSMUSG00000112018 ENSMUST00000220135 Gm47919 TEC Interval_9667 chr1 160880794 160881706 + 0 NA Intergenic Intergenic -4928 ENSMUSG00000077648.1 ENSMUSG00000077648 ENSMUST00000104460 Gm24988 snoRNA Interval_70818 chr17 15074893 15076045 + 0 NA TTS (ENSMUSG00000036552.19) protein_coding-TTS (ENSMUSG00000036552.19) 22627 ENSMUSG00000036552.19 ENSMUSG00000036552 ENSMUST00000186130 Ermard protein_coding Interval_36118 chr12 36030786 36031214 + 0 NA intron (ENSMUSG00000020577.17, intron 1 of 4) protein_coding-intron (ENSMUSG00000020577.17, intron 1 of 5) 8935 ENSMUSG00000020577.17 ENSMUSG00000020577 ENSMUST00000222584 Tspan13 protein_coding Interval_89286 chr2 18860810 18861717 + 0 NA intron (ENSMUSG00000026737.12, intron 3 of 4) protein_coding-intron (ENSMUSG00000026737.12, intron 6 of 9) 45011 ENSMUSG00000026737.12 ENSMUSG00000026737 ENSMUST00000152981 Pip4k2a protein_coding Interval_53718 chr14 61138363 61139629 + 0 NA intron (ENSMUSG00000048279.19, intron 1 of 8) protein_coding-intron (ENSMUSG00000048279.19, intron 1 of 9) -54477 ENSMUSG00000048279.19 ENSMUSG00000048279 ENSMUST00000229692 Sacs protein_coding Interval_40484 chr12 105125637 105126924 + 0 NA Intergenic Intergenic -8916 ENSMUSG00000113051.1 ENSMUSG00000113051 ENSMUST00000222354 Gm47672 processed_pseudogene Interval_164700 chr9 40659144 40662029 + 0 NA Intergenic Intergenic 8521 ENSMUSG00000110992.1 ENSMUSG00000110992 ENSMUST00000216204 Gm35371 lincRNA Interval_30429 chr11 94307042 94307848 + 0 NA intron (ENSMUSG00000020863.15, intron 1 of 9) protein_coding-intron (ENSMUSG00000020863.15, intron 2 of 10) -9227 ENSMUSG00000020863.15 ENSMUSG00000020863 ENSMUST00000165620 Luc7l3 protein_coding Interval_131429 chr5 137128927 137129262 + 0 NA Intergenic Intergenic 10033 ENSMUSG00000037390.12 ENSMUSG00000037390 ENSMUST00000160630 Muc3 protein_coding Interval_44365 chr13 44234387 44235239 + 0 NA intron (ENSMUSG00000113727.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000113727.1, intron 1 of 1) 2415 ENSMUSG00000113727.1 ENSMUSG00000113727 ENSMUST00000221767 Gm47781 lincRNA Interval_17246 chr10 75255279 75255518 + 0 NA intron (ENSMUSG00000033444.14, intron 5 of 15) protein_coding-intron (ENSMUSG00000033444.14, intron 5 of 15) -5569 ENSMUSG00000033444.14 ENSMUSG00000033444 ENSMUST00000218644 Specc1l protein_coding Interval_124008 chr5 37146393 37148303 + 0 NA intron (ENSMUSG00000117286.1, intron 19 of 33) protein_coding-intron (ENSMUSG00000063646.18, intron 19 of 19) 33564 ENSMUSG00000113373.1 ENSMUSG00000113373 ENSMUST00000212997 Jakmip1 protein_coding Interval_12348 chr1 192338476 192339550 + 0 NA intron (ENSMUSG00000058248.12, intron 7 of 10) protein_coding-intron (ENSMUSG00000058248.12, intron 7 of 10) -95727 ENSMUSG00000058248.12 ENSMUSG00000058248 ENSMUST00000151152 Kcnh1 protein_coding Interval_97354 chr2 135328793 135329011 + 0 NA intron (ENSMUSG00000085631.1, intron 1 of 1) protein_coding-intron (ENSMUSG00000051177.16, intron 14 of 31) -113286 ENSMUSG00000085247.1 ENSMUSG00000085247 ENSMUST00000138303 4930545L23Rik antisense Interval_72849 chr17 32634475 32636611 + 0 NA TTS (ENSMUSG00000062464.6) protein_coding-TTS (ENSMUSG00000062464.6) 841 ENSMUSG00000062464.6 ENSMUSG00000062464 ENSMUST00000235101 Cyp4f37 protein_coding Interval_47676 chr13 91157574 91158197 + 0 NA intron (ENSMUSG00000021619.6, intron 2 of 6) protein_coding-intron (ENSMUSG00000021619.6, intron 2 of 7) -62567 ENSMUSG00000091419.2 ENSMUSG00000091419 ENSMUST00000164671 Gm17450 pseudogene Interval_153649 chr8 4275403 4276492 + 0 NA promoter-TSS (ENSMUSG00000002949.15) protein_coding-promoter-TSS (ENSMUSG00000002949.15) -65 ENSMUSG00000002949.15 ENSMUSG00000002949 ENSMUST00000160371 Timm44 protein_coding Interval_55955 chr14 103153727 103154141 + 0 NA exon (ENSMUSG00000033004.16, exon 60 of 85) protein_coding-exon (ENSMUSG00000033004.16, exon 60 of 85) -54428 ENSMUSG00000022124.15 ENSMUSG00000022124 ENSMUST00000123043 Fbxl3 protein_coding Interval_21410 chr10 128432697 128432921 + 0 NA intron (ENSMUSG00000025373.14, intron 3 of 6) protein_coding-intron (ENSMUSG00000025373.14, intron 3 of 6) -3105 ENSMUSG00000088151.1 ENSMUSG00000088151 ENSMUST00000157526 Gm26347 scaRNA Interval_132953 chr5 148937751 148938096 + 0 NA intron (ENSMUSG00000106892.1, intron 2 of 6) protein_coding-intron (ENSMUSG00000106892.1, intron 2 of 6) -9258 ENSMUSG00000041298.15 ENSMUSG00000041298 ENSMUST00000152360 Katnal1 protein_coding Interval_150689 chr7 113349042 113349267 + 0 NA intron (ENSMUSG00000038187.14, intron 2 of 8) protein_coding-intron (ENSMUSG00000038187.14, intron 4 of 10) -17845 ENSMUSG00000038187.14 ENSMUSG00000038187 ENSMUST00000129567 Btbd10 protein_coding Interval_47235 chr13 78727489 78728433 + 0 NA Intergenic Intergenic 89944 ENSMUSG00000114594.1 ENSMUSG00000114594 ENSMUST00000226045 Gm48402 lincRNA Interval_20805 chr10 121096051 121096258 + 0 NA intron (ENSMUSG00000020218.11, intron 4 of 5) protein_coding-intron (ENSMUSG00000020218.11, intron 8 of 9) 19091 ENSMUSG00000112780.1 ENSMUSG00000112780 ENSMUST00000217935 Gm48410 lincRNA Interval_148305 chr7 80386313 80388448 + 0 NA promoter-TSS (ENSMUSG00000053158.10) protein_coding-promoter-TSS (ENSMUSG00000053158.10) 491 ENSMUSG00000053158.10 ENSMUSG00000053158 ENSMUST00000206271 Fes protein_coding Interval_64419 chr16 11239824 11240260 + 0 NA intron (ENSMUSG00000062203.15, intron 3 of 14) protein_coding-intron (ENSMUSG00000062203.15, intron 3 of 14) 14283 ENSMUSG00000062203.15 ENSMUSG00000062203 ENSMUST00000229660 Gspt1 protein_coding Interval_42058 chr13 7046900 7047576 + 0 NA intron (ENSMUSG00000114017.1, intron 2 of 2) lincRNA-intron (ENSMUSG00000114017.1, intron 2 of 2) 29078 ENSMUSG00000114017.1 ENSMUSG00000114017 ENSMUST00000222208 Gm40662 lincRNA Interval_66649 chr16 35861657 35862837 + 0 NA intron (ENSMUSG00000034422.14, intron 4 of 4) protein_coding-intron (ENSMUSG00000034422.14, intron 4 of 16) 5704 ENSMUSG00000116639.1 ENSMUSG00000116639 ENSMUST00000231830 Gm49730 TEC Interval_129469 chr5 120409045 120410238 + 0 NA Intergenic Intergenic -22058 ENSMUSG00000029595.9 ENSMUSG00000029595 ENSMUST00000031591 Lhx5 protein_coding Interval_82630 chr18 75520859 75521509 + 0 NA exon (ENSMUSG00000097712.1, exon 4 of 4) antisense-exon (ENSMUSG00000097712.1, exon 4 of 4) 6539 ENSMUSG00000097712.1 ENSMUSG00000097712 ENSMUST00000181913 Gm10532 antisense Interval_10388 chr1 170214797 170215794 + 0 NA promoter-TSS (ENSMUSG00000026667.14) protein_coding-promoter-TSS (ENSMUSG00000026667.14) 435 ENSMUSG00000044306.4 ENSMUSG00000044306 ENSMUST00000194988 4930500M09Rik antisense Interval_110905 chr4 9859138 9860602 + 0 NA exon (ENSMUSG00000051279.2, exon 2 of 2) protein_coding-exon (ENSMUSG00000051279.2, exon 2 of 2) 15498 ENSMUSG00000051279.2 ENSMUSG00000051279 ENSMUST00000057613 Gdf6 protein_coding Interval_62483 chr15 93397378 93399243 + 0 NA promoter-TSS (ENSMUSG00000036167.16) protein_coding-promoter-TSS (ENSMUSG00000036167.16) -9 ENSMUSG00000022635.9 ENSMUSG00000022635 ENSMUST00000159719 Zcrb1 protein_coding Interval_116731 chr4 116975947 116976783 + 0 NA intron (ENSMUSG00000033948.3, intron 8 of 13) protein_coding-intron (ENSMUSG00000033948.3, intron 8 of 13) 17232 ENSMUSG00000028684.14 ENSMUSG00000028684 ENSMUST00000139816 Urod protein_coding Interval_69867 chr16 97729171 97729621 + 0 NA Intergenic Intergenic 34391 ENSMUSG00000005251.15 ENSMUSG00000005251 ENSMUST00000019386 Ripk4 protein_coding Interval_76185 chr17 76336892 76337182 + 0 NA intron (ENSMUSG00000117598.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000117598.1, intron 1 of 1) 2158 ENSMUSG00000117598.1 ENSMUSG00000117598 ENSMUST00000234248 Gm50028 lincRNA Interval_45060 chr13 51792500 51793859 + 0 NA intron (ENSMUSG00000021451.16, intron 1 of 3) protein_coding-intron (ENSMUSG00000021451.16, intron 1 of 15) 485 ENSMUSG00000021451.16 ENSMUSG00000021451 ENSMUST00000155896 Sema4d protein_coding Interval_11838 chr1 186162523 186162876 + 0 NA Intergenic Intergenic -14639 ENSMUSG00000103449.1 ENSMUSG00000103449 ENSMUST00000195810 Gm37134 lincRNA Interval_69484 chr16 93821821 93822190 + 0 NA intron (ENSMUSG00000116927.1, intron 1 of 2) antisense-intron (ENSMUSG00000116927.1, intron 1 of 2) 11014 ENSMUSG00000116927.1 ENSMUSG00000116927 ENSMUST00000231503 Gm30881 antisense Interval_24835 chr11 40086119 40086318 + 0 NA intron (ENSMUSG00000085301.1, intron 2 of 7) lincRNA-intron (ENSMUSG00000085301.1, intron 2 of 7) 78024 ENSMUSG00000085301.1 ENSMUSG00000085301 ENSMUST00000130945 Gm12132 lincRNA Interval_74143 chr17 46782256 46783681 + 0 NA promoter-TSS (ENSMUSG00000063888.7) protein_coding-promoter-TSS (ENSMUSG00000063888.7) -331 ENSMUSG00000063888.7 ENSMUSG00000063888 ENSMUST00000233919 Rpl7l1 protein_coding Interval_33100 chr11 114433496 114433964 + 0 NA intron (ENSMUSG00000062391.3, intron 1 of 2) lincRNA-intron (ENSMUSG00000062391.3, intron 1 of 2) 15130 ENSMUSG00000062391.3 ENSMUSG00000062391 ENSMUST00000141088 4932435O22Rik lincRNA Interval_80612 chr18 44592925 44594174 + 0 NA intron (ENSMUSG00000071856.10, intron 3 of 18) protein_coding-intron (ENSMUSG00000071856.10, intron 3 of 18) -68554 ENSMUSG00000097610.2 ENSMUSG00000097610 ENSMUST00000202771 A930012L18Rik antisense Interval_164054 chr9 31191638 31192105 + 0 NA intron (ENSMUSG00000031996.17, intron 1 of 15) protein_coding-intron (ENSMUSG00000031996.17, intron 1 of 16) -30549 ENSMUSG00000031996.17 ENSMUSG00000031996 ENSMUST00000213273 Aplp2 protein_coding Interval_84717 chr19 15910971 15911270 + 0 NA intron (ENSMUSG00000024640.9, intron 6 of 8) protein_coding-intron (ENSMUSG00000024640.9, intron 6 of 8) -32490 ENSMUSG00000090147.1 ENSMUSG00000090147 ENSMUST00000159873 Gm3329 processed_pseudogene Interval_131388 chr5 136869718 136870892 + 0 NA promoter-TSS (ENSMUSG00000092402.1) sense_intronic-promoter-TSS (ENSMUSG00000092402.1) -583 ENSMUSG00000092402.1 ENSMUSG00000092402 ENSMUST00000174452 Gm20485 sense_intronic Interval_126996 chr5 99287839 99288792 + 0 NA intron (ENSMUSG00000089809.9, intron 4 of 16) protein_coding-intron (ENSMUSG00000089809.9, intron 4 of 16) 14220 ENSMUSG00000105686.1 ENSMUSG00000105686 ENSMUST00000196434 Gm35394 lincRNA Interval_18034 chr10 81477307 81477820 + 0 NA intron (ENSMUSG00000034818.17, intron 1 of 11) protein_coding-intron (ENSMUSG00000034818.17, intron 1 of 11) 5141 ENSMUSG00000034818.17 ENSMUSG00000034818 ENSMUST00000147524 Celf5 protein_coding Interval_91197 chr2 35854860 35855300 + 0 NA intron (ENSMUSG00000026885.13, intron 6 of 9) protein_coding-intron (ENSMUSG00000026885.13, intron 6 of 9) 10885 ENSMUSG00000106994.1 ENSMUSG00000106994 ENSMUST00000202084 Gm10829 TEC Interval_43307 chr13 28924220 28924478 + 0 NA Intergenic Intergenic -26404 ENSMUSG00000113352.1 ENSMUSG00000113352 ENSMUST00000223473 Gm34639 lincRNA Interval_59240 chr15 49468581 49469018 + 0 NA Intergenic Intergenic -69396 ENSMUSG00000065760.1 ENSMUSG00000065760 ENSMUST00000083826 Gm23848 snRNA Interval_66992 chr16 39109464 39110544 + 0 NA Intergenic Intergenic 78902 ENSMUSG00000116965.1 ENSMUSG00000116965 ENSMUST00000231748 Gm36742 lincRNA Interval_137098 chr6 67319975 67321127 + 0 NA intron (ENSMUSG00000018341.12, intron 2 of 9) protein_coding-intron (ENSMUSG00000018341.12, intron 8 of 15) 19143 ENSMUSG00000018341.12 ENSMUSG00000018341 ENSMUST00000018485 Il12rb2 protein_coding Interval_139524 chr6 100775673 100776255 + 0 NA intron (ENSMUSG00000030074.9, intron 3 of 6) protein_coding-intron (ENSMUSG00000030074.9, intron 3 of 6) -15865 ENSMUSG00000107989.1 ENSMUSG00000107989 ENSMUST00000203856 Gm19692 TEC Interval_162894 chr9 11940024 11941355 + 0 NA Intergenic Intergenic 37560 ENSMUSG00000111111.1 ENSMUSG00000111111 ENSMUST00000217391 Gm47037 TEC Interval_148407 chr7 81083849 81084053 + 0 NA intron (ENSMUSG00000038763.12, intron 5 of 13) protein_coding-intron (ENSMUSG00000038763.12, intron 5 of 13) -10880 ENSMUSG00000038763.12 ENSMUSG00000038763 ENSMUST00000151115 Alpk3 protein_coding Interval_36195 chr12 38784202 38784632 + 0 NA intron (ENSMUSG00000004151.17, intron 1 of 8) protein_coding-intron (ENSMUSG00000004151.17, intron 4 of 12) -35126 ENSMUSG00000004151.17 ENSMUSG00000004151 ENSMUST00000161591 Etv1 protein_coding Interval_100663 chr2 170884391 170884659 + 0 NA Intergenic Intergenic 70299 ENSMUSG00000080955.1 ENSMUSG00000080955 ENSMUST00000117955 Gm14263 processed_pseudogene Interval_58416 chr15 34365915 34366223 + 0 NA intron (ENSMUSG00000022324.15, intron 4 of 13) protein_coding-intron (ENSMUSG00000022324.15, intron 4 of 18) -8197 ENSMUSG00000094447.2 ENSMUSG00000094447 ENSMUST00000179647 9430069I07Rik protein_coding Interval_92199 chr2 56037324 56038377 + 0 NA Intergenic Intergenic -2003 ENSMUSG00000082142.1 ENSMUSG00000082142 ENSMUST00000120018 Gm13518 processed_pseudogene Interval_95615 chr2 112831268 112831550 + 0 NA intron (ENSMUSG00000057378.15, intron 35 of 103) protein_coding-intron (ENSMUSG00000057378.15, intron 35 of 102) -174861 ENSMUSG00000057378.15 ENSMUSG00000057378 ENSMUST00000208135 Ryr3 protein_coding Interval_84873 chr19 18520625 18521084 + 0 NA intron (ENSMUSG00000024725.13, intron 9 of 10) protein_coding-intron (ENSMUSG00000024725.13, intron 9 of 10) 40778 ENSMUSG00000118192.1 ENSMUSG00000118192 ENSMUST00000237767 Gm50183 processed_pseudogene Interval_108256 chr3 123056880 123057066 + 0 NA Intergenic Intergenic -13238 ENSMUSG00000106114.1 ENSMUSG00000106114 ENSMUST00000197420 Gm43286 processed_pseudogene Interval_65185 chr16 20409461 20410618 + 0 NA intron (ENSMUSG00000022822.16, intron 2 of 4) protein_coding-intron (ENSMUSG00000022822.16, intron 2 of 10) -11091 ENSMUSG00000022822.16 ENSMUSG00000022822 ENSMUST00000231522 Abcc5 protein_coding Interval_19267 chr10 95898419 95899116 + 0 NA TTS (ENSMUSG00000077268.1) snoRNA-TTS (ENSMUSG00000077268.1) 164 ENSMUSG00000077268.1 ENSMUSG00000077268 ENSMUST00000104080 Gm24433 snoRNA Interval_28371 chr11 75436376 75436978 + 0 NA intron (ENSMUSG00000038224.12, intron 6 of 6) protein_coding-intron (ENSMUSG00000038224.12, intron 6 of 9) 2901 ENSMUSG00000038224.12 ENSMUSG00000038224 ENSMUST00000142094 Serpinf2 protein_coding Interval_144682 chr7 27501687 27502065 + 0 NA TTS (ENSMUSG00000087371.1) antisense-TTS (ENSMUSG00000087371.1) 4488 ENSMUSG00000053198.14 ENSMUSG00000053198 ENSMUST00000065487 Prx protein_coding Interval_125234 chr5 65560627 65562182 + 0 NA intron (ENSMUSG00000029203.16, intron 1 of 4) protein_coding-intron (ENSMUSG00000029203.16, intron 1 of 6) -7979 ENSMUSG00000029203.16 ENSMUSG00000029203 ENSMUST00000202572 Ube2k protein_coding Interval_59315 chr15 51590406 51590815 + 0 NA Intergenic Intergenic 39025 ENSMUSG00000115563.1 ENSMUSG00000115563 ENSMUST00000227000 Gm34562 lincRNA Interval_126528 chr5 89643148 89643601 + 0 NA Intergenic Intergenic -38542 ENSMUSG00000084500.1 ENSMUSG00000084500 ENSMUST00000122551 Gm25320 misc_RNA Interval_40397 chr12 104624762 104624960 + 0 NA Intergenic Intergenic 97191 ENSMUSG00000041415.10 ENSMUSG00000041415 ENSMUST00000222002 Dicer1 protein_coding Interval_165409 chr9 47575230 47575518 + 0 NA intron (ENSMUSG00000032076.20, intron 1 of 8) protein_coding-intron (ENSMUSG00000032076.20, intron 1 of 8) 45022 ENSMUSG00000032076.20 ENSMUSG00000032076 ENSMUST00000034581 Cadm1 protein_coding Interval_50368 chr14 12124061 12125324 + 0 NA intron (ENSMUSG00000021745.14, intron 8 of 29) protein_coding-intron (ENSMUSG00000021745.14, intron 8 of 29) 27892 ENSMUSG00000114246.1 ENSMUSG00000114246 ENSMUST00000225204 Gm48603 TEC Interval_43732 chr13 35839545 35840302 + 0 NA intron (ENSMUSG00000059288.14, intron 2 of 6) protein_coding-intron (ENSMUSG00000059288.14, intron 5 of 9) 41173 ENSMUSG00000114555.1 ENSMUSG00000114555 ENSMUST00000224988 Gm48706 TEC Interval_143549 chr7 12602068 12602983 + 0 NA promoter-TSS (ENSMUSG00000082872.1) processed_pseudogene-promoter-TSS (ENSMUSG00000082872.1) -671 ENSMUSG00000082872.1 ENSMUSG00000082872 ENSMUST00000118665 Gm15773 processed_pseudogene Interval_99339 chr2 159418244 159419065 + 0 NA Intergenic Intergenic 37803 ENSMUSG00000083913.1 ENSMUSG00000083913 ENSMUST00000120414 Gm14219 processed_pseudogene Interval_63776 chr15 103352593 103353547 + 0 NA intron (ENSMUSG00000000555.8, intron 14 of 30) protein_coding-intron (ENSMUSG00000000555.8, intron 13 of 29) -1692 ENSMUSG00000000555.8 ENSMUSG00000000555 ENSMUST00000230460 Itga5 protein_coding Interval_167720 chr9 72274564 72275832 + 0 NA promoter-TSS (ENSMUSG00000098340.1) lincRNA-promoter-TSS (ENSMUSG00000098340.1) -342 ENSMUSG00000098340.1 ENSMUSG00000098340 ENSMUST00000183670 Gm27253 lincRNA Interval_50998 chr14 21551698 21552073 + 0 NA intron (ENSMUSG00000021767.19, intron 2 of 5) protein_coding-intron (ENSMUSG00000021767.19, intron 2 of 16) 35010 ENSMUSG00000021767.19 ENSMUSG00000021767 ENSMUST00000226589 Kat6b protein_coding Interval_75322 chr17 65864801 65865230 + 0 NA intron (ENSMUSG00000024096.17, intron 2 of 2) protein_coding-intron (ENSMUSG00000024096.17, intron 2 of 9) 19388 ENSMUSG00000024096.17 ENSMUSG00000024096 ENSMUST00000233784 Ralbp1 protein_coding Interval_40543 chr12 105611392 105613104 + 0 NA Intergenic Intergenic 9129 ENSMUSG00000041347.5 ENSMUSG00000041347 ENSMUST00000041229 Bdkrb1 protein_coding Interval_53124 chr14 54594215 54595851 + 0 NA intron (ENSMUSG00000022179.5, intron 2 of 6) protein_coding-intron (ENSMUSG00000022179.5, intron 2 of 6) -9534 ENSMUSG00000022179.5 ENSMUSG00000022179 ENSMUST00000228422 4931414P19Rik protein_coding Interval_83664 chr19 3569519 3570674 + 0 NA intron (ENSMUSG00000024908.15, intron 1 of 3) protein_coding-intron (ENSMUSG00000024908.15, intron 1 of 22) 5626 ENSMUSG00000024908.15 ENSMUSG00000024908 ENSMUST00000226109 Ppp6r3 protein_coding Interval_59321 chr15 51673910 51674219 + 0 NA Intergenic Intergenic -44429 ENSMUSG00000115563.1 ENSMUSG00000115563 ENSMUST00000227000 Gm34562 lincRNA Interval_49760 chr13 114676029 114676251 + 0 NA intron (ENSMUSG00000051758.6, intron 3 of 6) lincRNA-intron (ENSMUSG00000051758.6, intron 3 of 6) 68903 ENSMUSG00000051758.6 ENSMUSG00000051758 ENSMUST00000181553 4930544M13Rik lincRNA Interval_116658 chr4 116422262 116423247 + 0 NA intron (ENSMUSG00000003810.13, intron 2 of 5) protein_coding-intron (ENSMUSG00000003810.13, intron 3 of 28) -26034 ENSMUSG00000082592.1 ENSMUSG00000082592 ENSMUST00000121683 Gm12950 processed_pseudogene Interval_31680 chr11 102218586 102219372 + 0 NA promoter-TSS (ENSMUSG00000008855.17) protein_coding-promoter-TSS (ENSMUSG00000008855.17) 11163 ENSMUSG00000008855.17 ENSMUSG00000008855 ENSMUST00000125072 Hdac5 protein_coding Interval_13567 chr10 19818087 19819005 + 0 NA Intergenic Intergenic 32913 ENSMUSG00000050473.5 ENSMUSG00000050473 ENSMUST00000059805 Slc35d3 protein_coding Interval_58031 chr15 26836740 26837364 + 0 NA intron (ENSMUSG00000043556.10, intron 1 of 1) protein_coding-intron (ENSMUSG00000043556.10, intron 1 of 3) 58466 ENSMUSG00000043556.10 ENSMUSG00000043556 ENSMUST00000226377 Fbxl7 protein_coding Interval_14640 chr10 37472895 37473765 + 0 NA Intergenic Intergenic -20650 ENSMUSG00000111549.1 ENSMUSG00000111549 ENSMUST00000215235 Gm48172 processed_pseudogene Interval_64992 chr16 17732187 17732576 + 0 NA intron (ENSMUSG00000012114.17, intron 1 of 4) protein_coding-intron (ENSMUSG00000012114.17, intron 1 of 4) -1788 ENSMUSG00000116936.1 ENSMUSG00000116936 ENSMUST00000231811 Bod1-ps processed_pseudogene Interval_29324 chr11 82947287 82948035 + 0 NA intron (ENSMUSG00000086327.2, intron 1 of 2) antisense-intron (ENSMUSG00000086327.2, intron 1 of 2) -3688 ENSMUSG00000054404.13 ENSMUSG00000054404 ENSMUST00000108157 Slfn5 protein_coding Interval_23421 chr11 22519866 22520931 + 0 NA Intergenic Intergenic 8310 ENSMUSG00000049904.7 ENSMUSG00000049904 ENSMUST00000059319 Tmem17 protein_coding Interval_40666 chr12 106633184 106633711 + 0 NA Intergenic Intergenic 74697 ENSMUSG00000091583.1 ENSMUSG00000091583 ENSMUST00000146663 Gm17033 lincRNA Interval_66957 chr16 38800198 38800518 + 0 NA promoter-TSS (ENSMUSG00000049436.5) protein_coding-promoter-TSS (ENSMUSG00000049436.5) -13632 ENSMUSG00000081444.1 ENSMUSG00000081444 ENSMUST00000120118 Gm15803 processed_pseudogene Interval_154777 chr8 23271431 23272494 + 0 NA Intergenic Intergenic -14896 ENSMUSG00000015341.17 ENSMUSG00000015341 ENSMUST00000211602 Golga7 protein_coding Interval_126735 chr5 92397945 92399030 + 0 NA intron (ENSMUSG00000034842.16, intron 1 of 6) protein_coding-intron (ENSMUSG00000034842.16, intron 4 of 9) 26444 ENSMUSG00000034826.14 ENSMUSG00000034826 ENSMUST00000130156 Nup54 protein_coding Interval_140520 chr6 119204462 119205506 + 0 NA intron (ENSMUSG00000041477.14, intron 3 of 5) protein_coding-intron (ENSMUSG00000041477.14, intron 5 of 8) -8094 ENSMUSG00000051331.16 ENSMUSG00000051331 ENSMUST00000239204 Cacna1c protein_coding Interval_131621 chr5 138857206 138858759 + 0 NA Intergenic Intergenic 37902 ENSMUSG00000094504.3 ENSMUSG00000094504 ENSMUST00000179205 Gm5294 protein_coding Interval_161423 chr8 120383314 120385109 + 0 NA intron (ENSMUSG00000031822.20, intron 2 of 2) protein_coding-intron (ENSMUSG00000092329.1, intron 1 of 15) 59338 ENSMUSG00000080549.2 ENSMUSG00000080549 ENSMUST00000116899 Gm22715 miRNA Interval_161232 chr8 118936722 118938489 + 0 NA intron (ENSMUSG00000031841.19, intron 5 of 7) protein_coding-intron (ENSMUSG00000031841.19, intron 5 of 13) 210705 ENSMUSG00000087707.1 ENSMUSG00000087707 ENSMUST00000157082 Gm22999 snoRNA Interval_35634 chr12 26408730 26408978 + 0 NA intron (ENSMUSG00000020642.13, intron 1 of 9) protein_coding-intron (ENSMUSG00000020642.13, intron 1 of 9) 6156 ENSMUSG00000098771.1 ENSMUSG00000098771 ENSMUST00000183713 Mir6538 miRNA Interval_16511 chr10 63283602 63284506 + 0 NA intron (ENSMUSG00000020064.9, intron 9 of 25) protein_coding-intron (ENSMUSG00000020064.9, intron 9 of 24) -6450 ENSMUSG00000020064.9 ENSMUSG00000020064 ENSMUST00000219789 Herc4 protein_coding Interval_158410 chr8 83576893 83577785 + 0 NA intron (ENSMUSG00000110580.1, intron 1 of 1) protein_coding-intron (ENSMUSG00000031708.17, intron 1 of 12) 1295 ENSMUSG00000110580.1 ENSMUSG00000110580 ENSMUST00000212132 D830024N08Rik antisense Interval_121329 chr4 155018572 155020068 + 0 NA exon (ENSMUSG00000029055.17, exon 1 of 3) protein_coding-exon (ENSMUSG00000029055.17, exon 1 of 3) -22726 ENSMUSG00000073686.2 ENSMUSG00000073686 ENSMUST00000097750 Gm10564 antisense Interval_122018 chr5 14002676 14003452 + 0 NA Intergenic Intergenic -24830 ENSMUSG00000105528.1 ENSMUSG00000105528 ENSMUST00000197239 Gm43519 TEC Interval_133454 chr6 5210271 5210598 + 0 NA Intergenic Intergenic 10052 ENSMUSG00000107881.1 ENSMUSG00000107881 ENSMUST00000203092 Gm44250 TEC Interval_48765 chr13 102905520 102906817 + 0 NA promoter-TSS (ENSMUSG00000034751.17) protein_coding-promoter-TSS (ENSMUSG00000034751.17) 143733 ENSMUSG00000090329.1 ENSMUSG00000090329 ENSMUST00000170645 Gm17160 antisense Interval_82782 chr18 77050503 77052144 + 0 NA Intergenic Intergenic -4036 ENSMUSG00000025420.13 ENSMUSG00000025420 ENSMUST00000123650 Katnal2 protein_coding Interval_153739 chr8 5919953 5920972 + 0 NA Intergenic Intergenic 74261 ENSMUSG00000109069.1 ENSMUSG00000109069 ENSMUST00000208561 Gm2734 processed_pseudogene Interval_48164 chr13 96884335 96885303 + 0 NA intron (ENSMUSG00000109561.1, intron 22 of 24) protein_coding-intron (ENSMUSG00000109561.1, intron 18 of 19) -12457 ENSMUSG00000099053.1 ENSMUSG00000099053 ENSMUST00000184031 Gm27792 rRNA Interval_135566 chr6 40479297 40479697 + 0 NA TTS (ENSMUSG00000029911.14) protein_coding-TTS (ENSMUSG00000029911.14) 8044 ENSMUSG00000029911.14 ENSMUSG00000029911 ENSMUST00000141801 Ssbp1 protein_coding Interval_174465 chrX 152788210 152789053 + 0 NA intron (ENSMUSG00000025333.10, intron 3 of 3) protein_coding-intron (ENSMUSG00000025333.10, intron 3 of 8) 6710 ENSMUSG00000025333.10 ENSMUSG00000025333 ENSMUST00000139310 Gpr143 protein_coding Interval_53161 chr14 54813752 54814720 + 0 NA promoter-TSS (ENSMUSG00000112858.2) protein_coding-promoter-TSS (ENSMUSG00000112858.2) 86 ENSMUSG00000112858.2 ENSMUSG00000112858 ENSMUST00000219496 Rnf212b protein_coding Interval_109131 chr3 136441955 136442349 + 0 NA intron (ENSMUSG00000099508.1, intron 3 of 4) lincRNA-intron (ENSMUSG00000099508.1, intron 3 of 4) 7197 ENSMUSG00000099508.1 ENSMUSG00000099508 ENSMUST00000189233 1700030L20Rik lincRNA Interval_83987 chr19 5954223 5954993 + 0 NA promoter-TSS (ENSMUSG00000024833.15) protein_coding-promoter-TSS (ENSMUSG00000024833.15) 9561 ENSMUSG00000024833.15 ENSMUSG00000024833 ENSMUST00000238043 Pola2 protein_coding Interval_121020 chr4 152263349 152265610 + 0 NA intron (ENSMUSG00000028937.14, intron 8 of 8) protein_coding-intron (ENSMUSG00000028937.14, intron 8 of 8) -17891 ENSMUSG00000042804.13 ENSMUSG00000042804 ENSMUST00000144035 Gpr153 protein_coding Interval_10230 chr1 167340075 167341281 + 0 NA promoter-TSS (ENSMUSG00000088246.1) miRNA-promoter-TSS (ENSMUSG00000088246.1) -254 ENSMUSG00000088246.1 ENSMUSG00000088246 ENSMUST00000157621 Gm25911 miRNA Interval_95699 chr2 114397361 114397740 + 0 NA Intergenic Intergenic -124115 ENSMUSG00000101266.1 ENSMUSG00000101266 ENSMUST00000187452 Gm29234 lincRNA Interval_139244 chr6 97506285 97506790 + 0 NA intron (ENSMUSG00000030064.16, intron 2 of 7) protein_coding-intron (ENSMUSG00000030064.16, intron 2 of 23) 41030 ENSMUSG00000064724.1 ENSMUSG00000064724 ENSMUST00000082790 Gm25852 snoRNA Interval_41084 chr12 111077555 111077768 + 0 NA intron (ENSMUSG00000037896.17, intron 2 of 11) protein_coding-intron (ENSMUSG00000037896.17, intron 2 of 11) -9633 ENSMUSG00000114110.1 ENSMUSG00000114110 ENSMUST00000222551 Gm46379 processed_pseudogene Interval_105563 chr3 87778061 87778987 + 0 NA exon (ENSMUSG00000028072.6, exon 17 of 17) protein_coding-exon (ENSMUSG00000028072.6, exon 17 of 17) -9558 ENSMUSG00000028073.15 ENSMUSG00000028073 ENSMUST00000173184 Pear1 protein_coding Interval_116775 chr4 117236241 117236441 + 0 NA intron (ENSMUSG00000060268.12, intron 3 of 12) protein_coding-intron (ENSMUSG00000060268.12, intron 3 of 7) 15576 ENSMUSG00000060268.12 ENSMUSG00000060268 ENSMUST00000130660 Armh1 protein_coding Interval_40175 chr12 102310809 102311041 + 0 NA intron (ENSMUSG00000044456.16, intron 1 of 9) protein_coding-intron (ENSMUSG00000044456.16, intron 1 of 9) 27757 ENSMUSG00000044456.16 ENSMUSG00000044456 ENSMUST00000139686 Rin3 protein_coding Interval_170247 chr9 106437618 106438890 + 0 NA promoter-TSS (ENSMUSG00000023262.13) protein_coding-promoter-TSS (ENSMUSG00000023262.13) -3091 ENSMUSG00000023262.13 ENSMUSG00000023262 ENSMUST00000190900 Acy1 protein_coding Interval_26467 chr11 58021288 58022024 + 0 NA intron (ENSMUSG00000037331.15, intron 1 of 18) protein_coding-intron (ENSMUSG00000037331.15, intron 1 of 18) 12592 ENSMUSG00000037331.15 ENSMUSG00000037331 ENSMUST00000140500 Larp1 protein_coding Interval_159691 chr8 97447601 97448377 + 0 NA Intergenic Intergenic -18879 ENSMUSG00000081111.3 ENSMUSG00000081111 ENSMUST00000119397 Gm5913 processed_pseudogene Interval_171941 chr9 122768350 122768521 + 0 NA intron (ENSMUSG00000094985.2, intron 4 of 4) protein_coding-intron (ENSMUSG00000094985.2, intron 5 of 19) 17832 ENSMUSG00000094985.2 ENSMUSG00000094985 ENSMUST00000213519 Topaz1 protein_coding Interval_101714 chr3 9098497 9098805 + 0 NA Intergenic Intergenic 25884 ENSMUSG00000103011.1 ENSMUSG00000103011 ENSMUST00000193160 Gm8860 processed_pseudogene Interval_79172 chr18 25390874 25391759 + 0 NA promoter-TSS (ENSMUSG00000089908.1) processed_pseudogene-promoter-TSS (ENSMUSG00000089908.1) -485 ENSMUSG00000089908.1 ENSMUSG00000089908 ENSMUST00000163015 Gm16558 processed_pseudogene Interval_41281 chr12 112387840 112388079 + 0 NA Intergenic Intergenic 17835 ENSMUSG00000113120.1 ENSMUSG00000113120 ENSMUST00000221094 E330035G20Rik lincRNA Interval_57783 chr15 19893265 19893821 + 0 NA Intergenic Intergenic 125322 ENSMUSG00000115830.1 ENSMUSG00000115830 ENSMUST00000226614 Gm49176 processed_pseudogene Interval_44956 chr13 50906337 50907489 + 0 NA Intergenic Intergenic -46757 ENSMUSG00000113509.1 ENSMUSG00000113509 ENSMUST00000223072 Gm19009 processed_pseudogene Interval_297 KZ289093.1 14785 15415 + 0 NA NA NA NA NA Interval_45092 chr13 52069997 52070579 + 0 NA Intergenic Intergenic 26354 ENSMUSG00000113090.1 ENSMUSG00000113090 ENSMUST00000222306 Gm48190 lincRNA Interval_39337 chr12 86800720 86802780 + 0 NA Intergenic Intergenic -8207 ENSMUSG00000088403.1 ENSMUSG00000088403 ENSMUST00000157778 Gm25888 misc_RNA Interval_121445 chr4 155839526 155839946 + 0 NA promoter-TSS (ENSMUSG00000029070.9) protein_coding-promoter-TSS (ENSMUSG00000029070.9) 442 ENSMUSG00000073679.2 ENSMUSG00000073679 ENSMUST00000097740 Mxra8os antisense Interval_138976 chr6 93955870 93956585 + 0 NA intron (ENSMUSG00000045095.16, intron 1 of 24) protein_coding-intron (ENSMUSG00000045095.16, intron 1 of 21) -43723 ENSMUSG00000045095.16 ENSMUSG00000045095 ENSMUST00000203034 Magi1 protein_coding Interval_14437 chr10 33708415 33709715 + 0 NA Intergenic Intergenic -5827 ENSMUSG00000112656.1 ENSMUSG00000112656 ENSMUST00000217937 Gm47929 unprocessed_pseudogene Interval_152943 chr7 139955891 139956673 + 0 NA TTS (ENSMUSG00000085354.1) lincRNA-TTS (ENSMUSG00000085354.1) 1340 ENSMUSG00000105165.1 ENSMUSG00000105165 ENSMUST00000200604 Mir7686 miRNA Interval_81469 chr18 60951961 60953432 + 0 NA intron (ENSMUSG00000024617.16, intron 6 of 6) protein_coding-intron (ENSMUSG00000024617.16, intron 6 of 18) -1177 ENSMUSG00000098247.1 ENSMUSG00000098247 ENSMUST00000183978 Mir7220 miRNA Interval_135817 chr6 47529064 47529584 + 0 NA TTS (ENSMUSG00000029687.16) protein_coding-TTS (ENSMUSG00000029687.16) 9628 ENSMUSG00000029686.15 ENSMUSG00000029686 ENSMUST00000149531 Cul1 protein_coding Interval_42159 chr13 9308577 9311338 + 0 NA intron (ENSMUSG00000048264.16, intron 1 of 36) protein_coding-intron (ENSMUSG00000048264.16, intron 1 of 38) -11470 ENSMUSG00000113922.1 ENSMUSG00000113922 ENSMUST00000221638 Gm48887 TEC Interval_39518 chr12 89192674 89192869 + 0 NA promoter-TSS (ENSMUSG00000066392.12) protein_coding-promoter-TSS (ENSMUSG00000066392.12) 62590 ENSMUSG00000103136.1 ENSMUSG00000103136 ENSMUST00000194420 Gm37980 TEC Interval_16990 chr10 70303400 70304106 + 0 NA Intergenic Intergenic -15577 ENSMUSG00000052426.4 ENSMUSG00000052426 ENSMUST00000064271 Gm9877 pseudogene Interval_140351 chr6 116980268 116981182 + 0 NA Intergenic Intergenic -1294 ENSMUSG00000107415.1 ENSMUSG00000107415 ENSMUST00000203025 Gm43929 processed_pseudogene Interval_104964 chr3 79321488 79322578 + 0 NA Intergenic Intergenic -23346 ENSMUSG00000091685.6 ENSMUSG00000091685 ENSMUST00000199658 Gm17359 protein_coding Interval_117090 chr4 119462896 119463532 + 0 NA intron (ENSMUSG00000070806.5, intron 2 of 2) protein_coding-intron (ENSMUSG00000070806.5, intron 2 of 2) 29295 ENSMUSG00000048899.8 ENSMUSG00000048899 ENSMUST00000126728 Rimkla protein_coding Interval_92364 chr2 59284451 59284832 + 0 NA intron (ENSMUSG00000026991.20, intron 3 of 3) protein_coding-intron (ENSMUSG00000026991.20, intron 3 of 21) 102830 ENSMUSG00000087455.7 ENSMUSG00000087455 ENSMUST00000155111 5330411J11Rik processed_transcript Interval_81192 chr18 56220721 56224206 + 0 NA TTS (ENSMUSG00000092866.1) miRNA-TTS (ENSMUSG00000092866.1) 629 ENSMUSG00000092866.1 ENSMUSG00000092866 ENSMUST00000175125 Gm25476 miRNA Interval_115127 chr4 91254238 91254793 + 0 NA promoter-TSS (ENSMUSG00000008489.18) protein_coding-promoter-TSS (ENSMUSG00000008489.18) 97833 ENSMUSG00000081876.1 ENSMUSG00000081876 ENSMUST00000119935 Gm12644 processed_pseudogene Interval_73536 chr17 39919654 39921513 + 0 NA promoter-TSS (ENSMUSG00000117201.1) processed_pseudogene-promoter-TSS (ENSMUSG00000117201.1) 67 ENSMUSG00000117201.1 ENSMUSG00000117201 ENSMUST00000233556 Gm49834 processed_pseudogene Interval_129306 chr5 118813837 118814560 + 0 NA Intergenic Intergenic 63267 ENSMUSG00000106708.1 ENSMUSG00000106708 ENSMUST00000202790 Gm43782 lincRNA Interval_148526 chr7 82119054 82120361 + 0 NA promoter-TSS (ENSMUSG00000108868.1) lincRNA-promoter-TSS (ENSMUSG00000108868.1) -365 ENSMUSG00000108868.1 ENSMUSG00000108868 ENSMUST00000209149 Gm32850 lincRNA Interval_101508 chr3 3297645 3298561 + 0 NA Intergenic Intergenic -31076 ENSMUSG00000103028.1 ENSMUSG00000103028 ENSMUST00000195392 Gm8747 processed_pseudogene Interval_35083 chr12 17183882 17184783 + 0 NA Intergenic Intergenic -7444 ENSMUSG00000051726.6 ENSMUSG00000051726 ENSMUST00000170580 Kcnf1 protein_coding Interval_36825 chr12 54409127 54410951 + 0 NA Intergenic Intergenic 9863 ENSMUSG00000112053.1 ENSMUSG00000112053 ENSMUST00000217924 Gm46328 lincRNA Interval_161251 chr8 119228817 119229151 + 0 NA intron (ENSMUSG00000031841.19, intron 2 of 3) protein_coding-intron (ENSMUSG00000031841.19, intron 8 of 13) 77519 ENSMUSG00000031841.19 ENSMUSG00000031841 ENSMUST00000151842 Cdh13 protein_coding Interval_92211 chr2 56681912 56682391 + 0 NA Intergenic Intergenic -103660 ENSMUSG00000098437.1 ENSMUSG00000098437 ENSMUST00000184814 Mir195b miRNA Interval_146303 chr7 45228696 45230112 + 0 NA intron (ENSMUSG00000030796.17, intron 8 of 10) protein_coding-intron (ENSMUSG00000030796.17, intron 9 of 11) 9470 ENSMUSG00000030798.15 ENSMUSG00000030798 ENSMUST00000210372 Cd37 protein_coding Interval_89355 chr2 19684952 19686455 + 0 NA intron (ENSMUSG00000087246.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000087246.1, intron 1 of 1) 454 ENSMUSG00000087246.1 ENSMUSG00000087246 ENSMUST00000135767 Gm13346 lincRNA Interval_55103 chr14 78126307 78126560 + 0 NA Intergenic Intergenic -37452 ENSMUSG00000045655.9 ENSMUSG00000045655 ENSMUST00000173826 Fam216b protein_coding Interval_25776 chr11 51643308 51644196 + 0 NA exon (ENSMUSG00000001053.15, exon 5 of 5) protein_coding-exon (ENSMUSG00000001053.15, exon 5 of 5) 7085 ENSMUSG00000001053.15 ENSMUSG00000001053 ENSMUST00000142721 N4bp3 protein_coding Interval_94206 chr2 85089480 85089804 + 0 NA Intergenic Intergenic -3181 ENSMUSG00000086969.1 ENSMUSG00000086969 ENSMUST00000135659 4930443O20Rik processed_transcript Interval_49385 chr13 111593195 111593826 + 0 NA TTS (ENSMUSG00000067122.2) protein_coding-TTS (ENSMUSG00000067122.2) 101 ENSMUSG00000096842.1 ENSMUSG00000096842 ENSMUST00000179668 Gm10736 processed_pseudogene Interval_132775 chr5 147789423 147789684 + 0 NA Intergenic Intergenic -32692 ENSMUSG00000107065.1 ENSMUSG00000107065 ENSMUST00000202661 Gm43155 processed_pseudogene Interval_157394 chr8 70097173 70097428 + 0 NA intron (ENSMUSG00000002341.8, intron 14 of 14) protein_coding-intron (ENSMUSG00000002341.8, intron 14 of 14) 5286 ENSMUSG00000099042.1 ENSMUSG00000099042 ENSMUST00000184696 Mir7066 miRNA Interval_8682 chr1 147591848 147592253 + 0 NA Intergenic Intergenic 76324 ENSMUSG00000104331.1 ENSMUSG00000104331 ENSMUST00000194803 Gm38284 TEC Interval_35199 chr12 18015047 18015669 + 0 NA intron (ENSMUSG00000113642.1, intron 1 of 1) transcribed_unprocessed_pseudogene-intron (ENSMUSG00000113642.1, intron 1 of 1) 1746 ENSMUSG00000114040.1 ENSMUSG00000114040 ENSMUST00000223372 Gm48319 unprocessed_pseudogene Interval_159764 chr8 101752492 101753051 + 0 NA Intergenic Intergenic -213063 ENSMUSG00000087985.1 ENSMUSG00000087985 ENSMUST00000157360 Gm22223 snoRNA Interval_115175 chr4 93363573 93364133 + 0 NA Intergenic Intergenic -28342 ENSMUSG00000054000.5 ENSMUSG00000054000 ENSMUST00000066774 Tusc1 protein_coding Interval_36731 chr12 52637393 52638511 + 0 NA Intergenic Intergenic 30282 ENSMUSG00000112412.1 ENSMUSG00000112412 ENSMUST00000218346 Gm35239 lincRNA Interval_24924 chr11 41439488 41439797 + 0 NA Intergenic Intergenic -59095 ENSMUSG00000058809.8 ENSMUSG00000058809 ENSMUST00000119713 Hspd1-ps3 processed_pseudogene Interval_2496 chr1 39746696 39746924 + 0 NA Intergenic Intergenic -25813 ENSMUSG00000057173.8 ENSMUSG00000057173 ENSMUST00000126760 Rfx8 protein_coding Interval_117965 chr4 127365239 127366278 + 0 NA Intergenic Intergenic -7577 ENSMUSG00000042357.2 ENSMUSG00000042357 ENSMUST00000046498 Gjb5 protein_coding Interval_168944 chr9 89411106 89411397 + 0 NA Intergenic Intergenic 78435 ENSMUSG00000066442.17 ENSMUSG00000066442 ENSMUST00000209568 Mthfs protein_coding Interval_142263 chr6 140232834 140233039 + 0 NA Intergenic Intergenic 63520 ENSMUSG00000107572.1 ENSMUSG00000107572 ENSMUST00000204425 Gm3961 TEC Interval_115064 chr4 89146538 89146758 + 0 NA intron (ENSMUSG00000062937.7, intron 1 of 7) protein_coding-intron (ENSMUSG00000062937.7, intron 1 of 7) 15543 ENSMUSG00000083989.2 ENSMUSG00000083989 ENSMUST00000120724 Gm12607 processed_pseudogene Interval_156564 chr8 52138571 52138804 + 0 NA Intergenic Intergenic 58369 ENSMUSG00000052825.6 ENSMUSG00000052825 ENSMUST00000182415 Gm9892 processed_pseudogene Interval_55357 chr14 84442817 84443783 + 0 NA promoter-TSS (ENSMUSG00000035566.7) protein_coding-promoter-TSS (ENSMUSG00000035566.7) -5207 ENSMUSG00000035566.7 ENSMUSG00000035566 ENSMUST00000226362 Pcdh17 protein_coding Interval_121821 chr5 8482886 8483113 + 0 NA Intergenic Intergenic 31853 ENSMUSG00000105740.1 ENSMUSG00000105740 ENSMUST00000200378 Gm42685 TEC Interval_31279 chr11 99307387 99308156 + 0 NA Intergenic Intergenic -1631 ENSMUSG00000083666.1 ENSMUSG00000083666 ENSMUST00000121842 Gm12358 processed_pseudogene Interval_780 chr1 10993054 10994461 + 0 NA exon (ENSMUSG00000048960.13, exon 1 of 40) protein_coding-exon (ENSMUSG00000048960.13, exon 1 of 40) 239 ENSMUSG00000048960.13 ENSMUSG00000048960 ENSMUST00000188154 Prex2 protein_coding Interval_162208 chr8 125972136 125974790 + 0 NA Intergenic Intergenic -21973 ENSMUSG00000033998.9 ENSMUSG00000033998 ENSMUST00000212831 Kcnk1 protein_coding Interval_49406 chr13 111763966 111764219 + 0 NA exon (ENSMUSG00000021754.17, exon 7 of 20) protein_coding-exon (ENSMUSG00000021754.17, exon 7 of 20) -12719 ENSMUSG00000021754.17 ENSMUSG00000021754 ENSMUST00000145055 Map3k1 protein_coding Interval_5907 chr1 93157557 93157800 + 0 NA intron (ENSMUSG00000034159.12, intron 2 of 5) protein_coding-intron (ENSMUSG00000034159.12, intron 2 of 5) 3192 ENSMUSG00000034159.12 ENSMUSG00000034159 ENSMUST00000143419 Mab21l4 protein_coding Interval_84892 chr19 18646375 18647255 + 0 NA intron (ENSMUSG00000037847.14, intron 9 of 9) protein_coding-intron (ENSMUSG00000037847.14, intron 8 of 8) 14865 ENSMUSG00000037847.14 ENSMUSG00000037847 ENSMUST00000159572 Nmrk1 protein_coding Interval_168994 chr9 90089525 90090127 + 0 NA Intergenic Intergenic 24833 ENSMUSG00000062270.14 ENSMUSG00000062270 ENSMUST00000185433 Morf4l1 protein_coding Interval_30002 chr11 88629727 88630001 + 0 NA intron (ENSMUSG00000069769.13, intron 5 of 5) protein_coding-intron (ENSMUSG00000069769.13, intron 5 of 13) -39717 ENSMUSG00000069769.13 ENSMUSG00000069769 ENSMUST00000126293 Msi2 protein_coding Interval_23937 chr11 28582164 28584609 + 0 NA exon (ENSMUSG00000032878.16, exon 1 of 4) protein_coding-exon (ENSMUSG00000032878.16, exon 1 of 4) -98178 ENSMUSG00000084966.1 ENSMUSG00000084966 ENSMUST00000146554 2810471M01Rik lincRNA Interval_41348 chr12 112985253 112985801 + 0 NA intron (ENSMUSG00000011158.8, intron 1 of 7) protein_coding-intron (ENSMUSG00000011158.8, intron 3 of 17) 1206 ENSMUSG00000011158.8 ENSMUSG00000011158 ENSMUST00000223037 Brf1 protein_coding Interval_114062 chr4 62881752 62882447 + 0 NA Intergenic Intergenic -57242 ENSMUSG00000087967.1 ENSMUSG00000087967 ENSMUST00000157342 Gm25391 snoRNA Interval_64602 chr16 13614186 13614413 + 0 NA intron (ENSMUSG00000022685.9, intron 19 of 23) protein_coding-intron (ENSMUSG00000022685.9, intron 18 of 23) 53839 ENSMUSG00000022685.9 ENSMUSG00000022685 ENSMUST00000229251 Parn protein_coding Interval_139013 chr6 94203752 94203966 + 0 NA intron (ENSMUSG00000045095.16, intron 2 of 2) protein_coding-intron (ENSMUSG00000045095.16, intron 1 of 21) 120175 ENSMUSG00000107545.1 ENSMUSG00000107545 ENSMUST00000204466 Gm44307 processed_pseudogene Interval_139976 chr6 113151222 113152573 + 0 NA TTS (ENSMUSG00000034269.12) protein_coding-TTS (ENSMUSG00000034269.12) 41480 ENSMUSG00000034269.12 ENSMUSG00000034269 ENSMUST00000156048 Setd5 protein_coding Interval_97350 chr2 135240473 135241058 + 0 NA intron (ENSMUSG00000051177.16, intron 4 of 6) protein_coding-intron (ENSMUSG00000051177.16, intron 4 of 31) -25149 ENSMUSG00000085247.1 ENSMUSG00000085247 ENSMUST00000138303 4930545L23Rik antisense Interval_94083 chr2 83718215 83719119 + 0 NA Intergenic Intergenic -5790 ENSMUSG00000027087.11 ENSMUSG00000027087 ENSMUST00000131192 Itgav protein_coding Interval_162231 chr8 126257831 126258931 + 0 NA intron (ENSMUSG00000057060.8, intron 1 of 5) protein_coding-intron (ENSMUSG00000057060.8, intron 1 of 5) 119386 ENSMUSG00000057060.8 ENSMUSG00000057060 ENSMUST00000108759 Slc35f3 protein_coding Interval_118138 chr4 129172479 129173489 + 0 NA intron (ENSMUSG00000040928.15, intron 1 of 1) protein_coding-intron (ENSMUSG00000040928.15, intron 3 of 4) 16593 ENSMUSG00000040928.15 ENSMUSG00000040928 ENSMUST00000142490 S100pbp protein_coding Interval_167752 chr9 72530346 72533079 + 0 NA promoter-TSS (ENSMUSG00000037674.15) protein_coding-promoter-TSS (ENSMUSG00000037674.15) 146 ENSMUSG00000096986.2 ENSMUSG00000096986 ENSMUST00000181405 4930509E16Rik lincRNA Interval_15203 chr10 43339393 43339758 + 0 NA intron (ENSMUSG00000038240.13, intron 2 of 2) protein_coding-intron (ENSMUSG00000038240.13, intron 2 of 7) 20215 ENSMUSG00000089673.1 ENSMUSG00000089673 ENSMUST00000159442 Gm16546 processed_pseudogene Interval_168992 chr9 90083879 90085406 + 0 NA Intergenic Intergenic 30017 ENSMUSG00000062270.14 ENSMUSG00000062270 ENSMUST00000185433 Morf4l1 protein_coding Interval_103018 chr3 34485272 34486784 + 0 NA intron (ENSMUSG00000105265.4, intron 2 of 2) processed_transcript-intron (ENSMUSG00000105265.4, intron 2 of 4) -3821 ENSMUSG00000099437.1 ENSMUSG00000099437 ENSMUST00000188411 Gm29135 lincRNA Interval_86523 chr19 41375794 41376274 + 0 NA exon (ENSMUSG00000025017.10, exon 2 of 17) protein_coding-exon (ENSMUSG00000025017.10, exon 2 of 17) 9068 ENSMUSG00000025017.10 ENSMUSG00000025017 ENSMUST00000235978 Pik3ap1 protein_coding Interval_81585 chr18 61879371 61879819 + 0 NA intron (ENSMUSG00000032735.15, intron 2 of 23) protein_coding-intron (ENSMUSG00000032735.15, intron 1 of 22) 32228 ENSMUSG00000032735.15 ENSMUSG00000032735 ENSMUST00000049378 Ablim3 protein_coding Interval_156803 chr8 60591369 60592348 + 0 NA Intergenic Intergenic 40873 ENSMUSG00000109930.1 ENSMUSG00000109930 ENSMUST00000210674 Gm34730 bidirectional_promoter_lncRNA Interval_20144 chr10 115241251 115242119 + 0 NA intron (ENSMUSG00000020130.9, intron 1 of 16) protein_coding-intron (ENSMUSG00000020130.9, intron 1 of 16) 9568 ENSMUSG00000020130.9 ENSMUSG00000020130 ENSMUST00000219274 Tbc1d15 protein_coding Interval_18115 chr10 82756229 82757954 + 0 NA exon (ENSMUSG00000020248.18, exon 1 of 2) protein_coding-exon (ENSMUSG00000020248.18, exon 1 of 2) -5432 ENSMUSG00000020248.18 ENSMUSG00000020248 ENSMUST00000128397 Nfyb protein_coding Interval_47233 chr13 78680403 78680619 + 0 NA Intergenic Intergenic 42494 ENSMUSG00000114594.1 ENSMUSG00000114594 ENSMUST00000226045 Gm48402 lincRNA Interval_113866 chr4 59446977 59447994 + 0 NA Intergenic Intergenic -78619 ENSMUSG00000083979.1 ENSMUSG00000083979 ENSMUST00000117967 Gm12527 processed_pseudogene Interval_142644 chr6 144557982 144558250 + 0 NA intron (ENSMUSG00000041540.16, intron 3 of 6) protein_coding-intron (ENSMUSG00000041540.16, intron 3 of 13) 76891 ENSMUSG00000087157.1 ENSMUSG00000087157 ENSMUST00000156443 Sox5os2 antisense Interval_145193 chr7 30562851 30564144 + 0 NA promoter-TSS (ENSMUSG00000036835.7) protein_coding-promoter-TSS (ENSMUSG00000036835.7) 141 ENSMUSG00000078765.11 ENSMUSG00000078765 ENSMUST00000165524 U2af1l4 protein_coding Interval_64438 chr16 11353535 11354285 + 0 NA intron (ENSMUSG00000071669.14, intron 3 of 20) protein_coding-intron (ENSMUSG00000071669.14, intron 3 of 7) 31002 ENSMUSG00000071669.14 ENSMUSG00000071669 ENSMUST00000134941 Snx29 protein_coding Interval_108416 chr3 126912012 126912206 + 0 NA Intergenic Intergenic 55410 ENSMUSG00000105469.1 ENSMUSG00000105469 ENSMUST00000196018 A930036I15Rik TEC Interval_139390 chr6 99742396 99743293 + 0 NA Intergenic Intergenic -16452 ENSMUSG00000030069.15 ENSMUSG00000030069 ENSMUST00000203738 Prok2 protein_coding Interval_91382 chr2 38418108 38418547 + 0 NA Intergenic Intergenic -5675 ENSMUSG00000085950.1 ENSMUSG00000085950 ENSMUST00000146404 Gm13589 lincRNA Interval_131094 chr5 135063703 135064840 + 0 NA promoter-TSS (ENSMUSG00000061118.8) protein_coding-promoter-TSS (ENSMUSG00000061118.8) 69 ENSMUSG00000061118.8 ENSMUSG00000061118 ENSMUST00000071263 Dnajc30 protein_coding Interval_165237 chr9 45623855 45624658 + 0 NA intron (ENSMUSG00000032087.11, intron 3 of 32) protein_coding-intron (ENSMUSG00000032087.11, intron 3 of 32) 10556 ENSMUSG00000096202.1 ENSMUSG00000096202 ENSMUST00000179911 Gm22069 snRNA Interval_127244 chr5 101835986 101837792 + 0 NA promoter-TSS (ENSMUSG00000092354.7) antisense-promoter-TSS (ENSMUSG00000092354.7) -563 ENSMUSG00000092354.7 ENSMUSG00000092354 ENSMUST00000174312 Gm20548 antisense Interval_36365 chr12 42134023 42134679 + 0 NA intron (ENSMUSG00000112898.1, intron 2 of 2) lincRNA-intron (ENSMUSG00000112898.1, intron 2 of 2) 17489 ENSMUSG00000112898.1 ENSMUSG00000112898 ENSMUST00000219118 Gm47020 lincRNA Interval_23604 chr11 23730347 23730720 + 0 NA intron (ENSMUSG00000020280.12, intron 5 of 5) protein_coding-intron (ENSMUSG00000020280.12, intron 17 of 17) 40437 ENSMUSG00000020275.9 ENSMUSG00000020275 ENSMUST00000102864 Rel protein_coding Interval_51703 chr14 31513917 31514422 + 0 NA Intergenic Intergenic 2821 ENSMUSG00000115102.1 ENSMUSG00000115102 ENSMUST00000226995 Gm49270 TEC Interval_118865 chr4 134155199 134155676 + 0 NA promoter-TSS (ENSMUSG00000037443.13) protein_coding-promoter-TSS (ENSMUSG00000037443.13) 1484 ENSMUSG00000037443.13 ENSMUSG00000037443 ENSMUST00000132120 Cep85 protein_coding Interval_120138 chr4 142913128 142913915 + 0 NA intron (ENSMUSG00000110067.2, intron 1 of 1) protein_coding-intron (ENSMUSG00000110067.2, intron 1 of 2) 122713 ENSMUSG00000103678.1 ENSMUSG00000103678 ENSMUST00000193751 Gm37624 TEC Interval_75525 chr17 67776925 67777230 + 0 NA intron (ENSMUSG00000032796.8, intron 29 of 62) protein_coding-intron (ENSMUSG00000032796.8, intron 29 of 62) 73986 ENSMUSG00000090955.1 ENSMUSG00000090955 ENSMUST00000166414 Gm17097 processed_pseudogene Interval_124551 chr5 50370226 50370412 + 0 NA intron (ENSMUSG00000105020.1, intron 4 of 4) unprocessed_pseudogene-intron (ENSMUSG00000105020.1, intron 4 of 4) -79833 ENSMUSG00000095857.1 ENSMUSG00000095857 ENSMUST00000179376 Gm22618 snRNA Interval_145184 chr7 30507541 30508290 + 0 NA intron (ENSMUSG00000036892.12, intron 1 of 4) protein_coding-intron (ENSMUSG00000036892.12, intron 7 of 9) -7784 ENSMUSG00000062132.10 ENSMUSG00000062132 ENSMUST00000238768 Arhgap33os protein_coding Interval_164941 chr9 43263722 43264469 + 0 NA promoter-TSS (ENSMUSG00000095385.3) lincRNA-promoter-TSS (ENSMUSG00000095385.3) -1184 ENSMUSG00000095385.3 ENSMUSG00000095385 ENSMUST00000210037 D630033O11Rik lincRNA Interval_156067 chr8 43328539 43329325 + 0 NA Intergenic Intergenic -21996 ENSMUSG00000051176.6 ENSMUSG00000051176 ENSMUST00000082120 Zfp42 protein_coding Interval_52514 chr14 47228561 47230153 + 0 NA Intergenic Intergenic -14619 ENSMUSG00000115400.1 ENSMUSG00000115400 ENSMUST00000228694 Gm49137 processed_pseudogene Interval_106620 chr3 97831781 97832011 + 0 NA intron (ENSMUSG00000038170.15, intron 3 of 45) protein_coding-intron (ENSMUSG00000038170.15, intron 3 of 46) -7275 ENSMUSG00000038170.15 ENSMUSG00000038170 ENSMUST00000163531 Pde4dip protein_coding Interval_100745 chr2 172291773 172292085 + 0 NA Intergenic Intergenic 3796 ENSMUSG00000085949.1 ENSMUSG00000085949 ENSMUST00000152112 Gm14275 lincRNA Interval_100931 chr2 173444505 173444808 + 0 NA Intergenic Intergenic 50090 ENSMUSG00000086114.1 ENSMUSG00000086114 ENSMUST00000147357 Gm14642 lincRNA Interval_84629 chr19 14528046 14528299 + 0 NA intron (ENSMUSG00000024642.17, intron 6 of 19) protein_coding-intron (ENSMUSG00000024642.17, intron 6 of 19) 67367 ENSMUSG00000024642.17 ENSMUSG00000024642 ENSMUST00000235975 Tle4 protein_coding Interval_1838 chr1 34088141 34088405 + 0 NA intron (ENSMUSG00000026131.20, intron 2 of 5) protein_coding-intron (ENSMUSG00000026131.20, intron 2 of 97) 11046 ENSMUSG00000026131.20 ENSMUSG00000026131 ENSMUST00000182507 Dst protein_coding Interval_93947 chr2 79821934 79822195 + 0 NA Intergenic Intergenic 35473 ENSMUSG00000034683.12 ENSMUSG00000034683 ENSMUST00000144432 Ppp1r1c protein_coding Interval_129800 chr5 122430128 122431104 + 0 NA intron (ENSMUSG00000029466.11, intron 4 of 11) protein_coding-intron (ENSMUSG00000029466.11, intron 3 of 10) 8299 ENSMUSG00000079906.2 ENSMUSG00000079906 ENSMUST00000116022 Gm15846 processed_pseudogene Interval_75514 chr17 67693930 67694328 + 0 NA Intergenic Intergenic -3136 ENSMUSG00000032796.8 ENSMUSG00000032796 ENSMUST00000233224 Lama1 protein_coding Interval_13370 chr10 17333810 17334066 + 0 NA Intergenic Intergenic -1061 ENSMUSG00000111922.1 ENSMUSG00000111922 ENSMUST00000220296 Gm47760 lincRNA Interval_119312 chr4 136806893 136808703 + 0 NA intron (ENSMUSG00000028664.14, intron 1 of 2) protein_coding-intron (ENSMUSG00000028664.14, intron 1 of 15) 78389 ENSMUSG00000036905.8 ENSMUSG00000036905 ENSMUST00000046384 C1qb protein_coding Interval_54767 chr14 74883178 74885528 + 0 NA intron (ENSMUSG00000068015.8, intron 1 of 18) protein_coding-intron (ENSMUSG00000068015.8, intron 1 of 19) -42092 ENSMUSG00000115002.1 ENSMUSG00000115002 ENSMUST00000227773 Gm10847 antisense Interval_52034 chr14 34735501 34736235 + 0 NA intron (ENSMUSG00000041408.18, intron 12 of 19) protein_coding-intron (ENSMUSG00000041408.18, intron 12 of 18) -1403 ENSMUSG00000041408.18 ENSMUSG00000041408 ENSMUST00000174559 Wapl protein_coding Interval_49159 chr13 108822610 108822846 + 0 NA intron (ENSMUSG00000021699.17, intron 3 of 3) protein_coding-intron (ENSMUSG00000021699.17, intron 1 of 16) -37438 ENSMUSG00000021699.17 ENSMUSG00000021699 ENSMUST00000155459 Pde4d protein_coding Interval_88573 chr2 6273382 6274484 + 0 NA intron (ENSMUSG00000087125.1, intron 3 of 6) antisense-intron (ENSMUSG00000087125.1, intron 3 of 6) -16667 ENSMUSG00000087485.1 ENSMUSG00000087485 ENSMUST00000131190 Gm13383 lincRNA Interval_116220 chr4 108813166 108813832 + 0 NA TTS (ENSMUSG00000028568.16) protein_coding-TTS (ENSMUSG00000028568.16) 17052 ENSMUSG00000028568.16 ENSMUSG00000028568 ENSMUST00000139464 Btf3l4 protein_coding Interval_17564 chr10 77796576 77797062 + 0 NA intron (ENSMUSG00000069581.12, intron 1 of 11) protein_coding-intron (ENSMUSG00000069581.12, intron 1 of 11) -1743 ENSMUSG00000096131.3 ENSMUSG00000096131 ENSMUST00000172205 Gm9639 protein_coding Interval_165478 chr9 48550310 48551185 + 0 NA Intergenic Intergenic -43687 ENSMUSG00000080401.1 ENSMUSG00000080401 ENSMUST00000116751 Gm23653 miRNA Interval_119130 chr4 135744869 135746121 + 0 NA intron (ENSMUSG00000037157.8, intron 5 of 6) protein_coding-intron (ENSMUSG00000037157.8, intron 5 of 6) 11200 ENSMUSG00000082743.1 ENSMUSG00000082743 ENSMUST00000119054 Gm12988 processed_pseudogene Interval_169262 chr9 95943608 95943893 + 0 NA intron (ENSMUSG00000097777.7, intron 2 of 2) protein_coding-intron (ENSMUSG00000032409.15, intron 42 of 46) 9137 ENSMUSG00000089085.1 ENSMUSG00000089085 ENSMUST00000158460 Gm24004 snRNA Interval_61076 chr15 79087798 79088447 + 0 NA intron (ENSMUSG00000033047.5, intron 3 of 5) protein_coding-intron (ENSMUSG00000033047.5, intron 10 of 12) 5073 ENSMUSG00000033047.5 ENSMUSG00000033047 ENSMUST00000230032 Eif3l protein_coding Interval_148781 chr7 87110555 87111238 + 0 NA Intergenic Intergenic -7971 ENSMUSG00000109334.1 ENSMUSG00000109334 ENSMUST00000208879 Gm44925 TEC Interval_149311 chr7 97361223 97362016 + 0 NA Intergenic Intergenic -25603 ENSMUSG00000035704.17 ENSMUSG00000035704 ENSMUST00000137105 Alg8 protein_coding Interval_95307 chr2 106041271 106041608 + 0 NA promoter-TSS (ENSMUSG00000100156.1) lincRNA-promoter-TSS (ENSMUSG00000100156.1) -943 ENSMUSG00000100156.1 ENSMUSG00000100156 ENSMUST00000187484 Gm29053 lincRNA Interval_147735 chr7 73150913 73151201 + 0 NA Intergenic Intergenic 26606 ENSMUSG00000108345.1 ENSMUSG00000108345 ENSMUST00000205892 4933435G04Rik lincRNA Interval_95717 chr2 114826441 114826693 + 0 NA Intergenic Intergenic -27526 ENSMUSG00000085222.1 ENSMUSG00000085222 ENSMUST00000144368 Gm13974 lincRNA Interval_133153 chr5 150220233 150220780 + 0 NA intron (ENSMUSG00000056602.12, intron 1 of 3) protein_coding-intron (ENSMUSG00000056602.12, intron 2 of 4) -23357 ENSMUSG00000107082.1 ENSMUSG00000107082 ENSMUST00000201709 Gm36378 processed_pseudogene Interval_52885 chr14 51846380 51847578 + 0 NA Intergenic Intergenic -6720 ENSMUSG00000062148.6 ENSMUSG00000062148 ENSMUST00000074477 Ear6 protein_coding Interval_165243 chr9 45742438 45742982 + 0 NA TTS (ENSMUSG00000032087.11) protein_coding-TTS (ENSMUSG00000032087.11) 51556 ENSMUSG00000043987.18 ENSMUSG00000043987 ENSMUST00000214868 Cep164 protein_coding Interval_9921 chr1 164126267 164127151 + 0 NA intron (ENSMUSG00000026580.16, intron 3 of 15) protein_coding-intron (ENSMUSG00000026580.16, intron 3 of 15) 11445 ENSMUSG00000026580.16 ENSMUSG00000026580 ENSMUST00000162102 Selp protein_coding Interval_25260 chr11 45932670 45933050 + 0 NA exon (ENSMUSG00000044847.13, exon 4 of 4) protein_coding-exon (ENSMUSG00000044847.13, exon 4 of 4) 12075 ENSMUSG00000044847.13 ENSMUSG00000044847 ENSMUST00000062458 Lsm11 protein_coding Interval_130389 chr5 127231249 127231528 + 0 NA Intergenic Intergenic -30291 ENSMUSG00000104778.1 ENSMUSG00000104778 ENSMUST00000197873 Gm43476 lincRNA Interval_152187 chr7 130519080 130520986 + 0 NA promoter-TSS (ENSMUSG00000030850.17) protein_coding-promoter-TSS (ENSMUSG00000030850.17) -572 ENSMUSG00000030850.17 ENSMUSG00000030850 ENSMUST00000207141 Ate1 protein_coding Interval_93711 chr2 76043369 76043560 + 0 NA intron (ENSMUSG00000075270.11, intron 12 of 14) protein_coding-intron (ENSMUSG00000075270.11, intron 15 of 19) -61497 ENSMUSG00000075271.4 ENSMUSG00000075271 ENSMUST00000099994 Ttc30a1 protein_coding Interval_22087 chr11 6266831 6268239 + 0 NA exon (ENSMUSG00000004393.10, exon 2 of 14) protein_coding-exon (ENSMUSG00000004393.10, exon 2 of 14) 211 ENSMUSG00000004393.10 ENSMUSG00000004393 ENSMUST00000155874 Ddx56 protein_coding Interval_124337 chr5 44166005 44166256 + 0 NA Intergenic Intergenic 28150 ENSMUSG00000105263.1 ENSMUSG00000105263 ENSMUST00000200473 Gm42427 TEC Interval_109973 chr3 152254431 152254658 + 0 NA intron (ENSMUSG00000039103.12, intron 2 of 8) protein_coding-intron (ENSMUSG00000039103.12, intron 2 of 12) -1741 ENSMUSG00000104621.1 ENSMUSG00000104621 ENSMUST00000197507 Gm43185 TEC Interval_82928 chr18 79485976 79486185 + 0 NA Intergenic Intergenic 67597 ENSMUSG00000087717.1 ENSMUSG00000087717 ENSMUST00000157092 Gm25824 snoRNA Interval_24203 chr11 31371280 31371634 + 0 NA Intergenic Intergenic -1410 ENSMUSG00000020303.2 ENSMUSG00000020303 ENSMUST00000134199 Stc2 protein_coding Interval_120160 chr4 143116068 143116354 + 0 NA intron (ENSMUSG00000057637.13, intron 8 of 9) protein_coding-intron (ENSMUSG00000057637.13, intron 8 of 9) 19951 ENSMUSG00000106597.1 ENSMUSG00000106597 ENSMUST00000197026 Mir7021 miRNA Interval_174739 chrX 164445865 164446774 + 0 NA exon (ENSMUSG00000031382.14, exon 3 of 3) protein_coding-exon (ENSMUSG00000031382.14, exon 3 of 3) 9309 ENSMUSG00000031382.14 ENSMUSG00000031382 ENSMUST00000033755 Asb11 protein_coding Interval_47334 chr13 81585782 81586546 + 0 NA intron (ENSMUSG00000069170.14, intron 4 of 6) protein_coding-intron (ENSMUSG00000069170.14, intron 4 of 89) -71628 ENSMUSG00000035840.7 ENSMUSG00000035840 ENSMUST00000224420 Lysmd3 protein_coding Interval_95375 chr2 107171500 107171932 + 0 NA Intergenic Intergenic -47756 ENSMUSG00000083181.1 ENSMUSG00000083181 ENSMUST00000120945 Gm13903 unprocessed_pseudogene Interval_131315 chr5 136386462 136386796 + 0 NA intron (ENSMUSG00000029705.17, intron 4 of 20) protein_coding-intron (ENSMUSG00000029705.17, intron 4 of 23) -10826 ENSMUSG00000106479.1 ENSMUSG00000106479 ENSMUST00000200230 Mir721 miRNA Interval_127155 chr5 100673682 100675251 + 0 NA promoter-TSS (ENSMUSG00000029319.8) protein_coding-promoter-TSS (ENSMUSG00000029319.8) 3607 ENSMUSG00000085269.1 ENSMUSG00000085269 ENSMUST00000123463 Gm15777 antisense Interval_23268 chr11 21050509 21050839 + 0 NA Intergenic Intergenic -40617 ENSMUSG00000020134.13 ENSMUSG00000020134 ENSMUST00000101477 Peli1 protein_coding Interval_963 chr1 13500481 13500984 + 0 NA Intergenic Intergenic 89143 ENSMUSG00000025935.10 ENSMUSG00000025935 ENSMUST00000188377 Tram1 protein_coding Interval_30058 chr11 88936402 88937713 + 0 NA TTS (ENSMUSG00000087338.2) antisense-TTS (ENSMUSG00000087338.2) 18408 ENSMUSG00000000278.10 ENSMUSG00000000278 ENSMUST00000000287 Scpep1 protein_coding Interval_139093 chr6 95019750 95020792 + 0 NA Intergenic Intergenic 76437 ENSMUSG00000108187.1 ENSMUSG00000108187 ENSMUST00000203778 4930511E03Rik lincRNA Interval_84159 chr19 7624862 7625176 + 0 NA intron (ENSMUSG00000024973.17, intron 4 of 5) protein_coding-intron (ENSMUSG00000024973.17, intron 4 of 5) 12450 ENSMUSG00000024973.17 ENSMUSG00000024973 ENSMUST00000148558 Plaat5 protein_coding Interval_6724 chr1 119010530 119011242 + 0 NA intron (ENSMUSG00000048402.14, intron 1 of 6) protein_coding-intron (ENSMUSG00000048402.14, intron 1 of 13) 42453 ENSMUSG00000048402.14 ENSMUSG00000048402 ENSMUST00000159678 Gli2 protein_coding Interval_153247 chr7 142893673 142893866 + 0 NA TTS (ENSMUSG00000000214.11) protein_coding-TTS (ENSMUSG00000000214.11) -36187 ENSMUSG00000108952.1 ENSMUSG00000108952 ENSMUST00000207692 Gm39117 lincRNA Interval_108425 chr3 127012744 127012969 + 0 NA intron (ENSMUSG00000032826.19, intron 17 of 30) protein_coding-intron (ENSMUSG00000032826.19, intron 16 of 45) -2055 ENSMUSG00000106612.1 ENSMUSG00000106612 ENSMUST00000199027 Gm43750 TEC Interval_128824 chr5 115475528 115476669 + 0 NA Intergenic Intergenic 3840 ENSMUSG00000029524.16 ENSMUSG00000029524 ENSMUST00000127479 Sirt4 protein_coding Interval_122031 chr5 14309513 14310296 + 0 NA Intergenic Intergenic 67442 ENSMUSG00000106310.1 ENSMUSG00000106310 ENSMUST00000197397 Gm43523 TEC Interval_97680 chr2 142684455 142684760 + 0 NA intron (ENSMUSG00000038844.10, intron 24 of 26) protein_coding-intron (ENSMUSG00000038844.10, intron 23 of 25) -102289 ENSMUSG00000088134.1 ENSMUSG00000088134 ENSMUST00000157509 Gm22310 snoRNA Interval_27099 chr11 62878758 62879428 + 0 NA promoter-TSS (ENSMUSG00000014177.10) protein_coding-promoter-TSS (ENSMUSG00000014177.10) -521 ENSMUSG00000014177.10 ENSMUSG00000014177 ENSMUST00000140377 Tvp23b protein_coding Interval_22313 chr11 8681048 8681763 + 0 NA Intergenic Intergenic -16724 ENSMUSG00000020422.14 ENSMUSG00000020422 ENSMUST00000134823 Tns3 protein_coding Interval_149123 chr7 94292833 94293118 + 0 NA intron (ENSMUSG00000108532.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000108532.1, intron 1 of 1) 79597 ENSMUSG00000108315.1 ENSMUSG00000108315 ENSMUST00000206678 Gm44601 lincRNA Interval_97529 chr2 138748159 138748475 + 0 NA Intergenic Intergenic -71612 ENSMUSG00000088983.1 ENSMUSG00000088983 ENSMUST00000158358 Mir1952 miRNA Interval_60588 chr15 75469912 75470493 + 0 NA Intergenic Intergenic -4344 ENSMUSG00000116365.1 ENSMUSG00000116365 ENSMUST00000229638 Gm34531 unprocessed_pseudogene Interval_106843 chr3 101268467 101268741 + 0 NA Intergenic Intergenic 7687 ENSMUSG00000081569.1 ENSMUSG00000081569 ENSMUST00000120255 Gm12490 processed_pseudogene Interval_166617 chr9 61324310 61324906 + 0 NA Intergenic Intergenic -30799 ENSMUSG00000111658.1 ENSMUSG00000111658 ENSMUST00000213377 B930092H01Rik lincRNA Interval_41062 chr12 110881772 110883713 + 0 NA intron (ENSMUSG00000021276.10, intron 1 of 3) protein_coding-intron (ENSMUSG00000021276.10, intron 2 of 4) 5415 ENSMUSG00000113385.1 ENSMUSG00000113385 ENSMUST00000222666 Gm48405 TEC Interval_44352 chr13 44020856 44021324 + 0 NA Intergenic Intergenic -2568 ENSMUSG00000113252.1 ENSMUSG00000113252 ENSMUST00000223171 Gm33489 lincRNA Interval_67081 chr16 42740462 42741901 + 0 NA intron (ENSMUSG00000075070.6, intron 1 of 3) lincRNA-intron (ENSMUSG00000075070.6, intron 1 of 3) 77255 ENSMUSG00000116679.1 ENSMUSG00000116679 ENSMUST00000232064 Gm49739 processed_pseudogene Interval_3489 chr1 58879253 58879864 + 0 NA intron (ENSMUSG00000099719.1, intron 3 of 11) unprocessed_pseudogene-intron (ENSMUSG00000099719.1, intron 3 of 11) 13234 ENSMUSG00000099719.1 ENSMUSG00000099719 ENSMUST00000188624 Gm28802 unprocessed_pseudogene Interval_10350 chr1 169893862 169894463 + 0 NA Intergenic Intergenic -35767 ENSMUSG00000070532.5 ENSMUSG00000070532 ENSMUST00000175731 Ccdc190 protein_coding Interval_64402 chr16 11146158 11146916 + 0 NA TTS (ENSMUSG00000037965.14) protein_coding-TTS (ENSMUSG00000037965.14) 2412 ENSMUSG00000076258.1 ENSMUSG00000076258 ENSMUST00000102303 Gm23935 miRNA Interval_131401 chr5 136947878 136948303 + 0 NA Intergenic Intergenic -14755 ENSMUSG00000019054.13 ENSMUSG00000019054 ENSMUST00000152658 Fis1 protein_coding Interval_60027 chr15 64074812 64076007 + 0 NA Intergenic Intergenic -14931 ENSMUSG00000022378.14 ENSMUSG00000022378 ENSMUST00000226129 Fam49b protein_coding Interval_100271 chr2 168097871 168099045 + 0 NA exon (ENSMUSG00000044641.7, exon 3 of 3) protein_coding-exon (ENSMUSG00000044641.7, exon 3 of 3) -16419 ENSMUSG00000118526.2 ENSMUSG00000118526 ENSMUST00000239040 AL831766.1 unitary_pseudogene Interval_166136 chr9 56956855 56957391 + 0 NA exon (ENSMUSG00000055334.4, exon 2 of 9) protein_coding-exon (ENSMUSG00000055334.4, exon 2 of 9) 6245 ENSMUSG00000055334.4 ENSMUSG00000055334 ENSMUST00000068856 Snupn protein_coding Interval_135669 chr6 42800963 42801231 + 0 NA exon (ENSMUSG00000108058.1, exon 1 of 1) polymorphic_pseudogene-exon (ENSMUSG00000108058.1, exon 1 of 1) 354 ENSMUSG00000108058.1 ENSMUSG00000108058 ENSMUST00000205127 Olfr451-ps1 polymorphic_pseudogene Interval_121361 chr4 155259468 155260154 + 0 NA TTS (ENSMUSG00000029053.16) protein_coding-TTS (ENSMUSG00000029053.16) 9845 ENSMUSG00000073684.13 ENSMUSG00000073684 ENSMUST00000156404 Faap20 protein_coding Interval_171119 chr9 114630010 114630289 + 0 NA intron (ENSMUSG00000056167.8, intron 2 of 4) protein_coding-intron (ENSMUSG00000056167.8, intron 3 of 19) 10032 ENSMUSG00000056167.8 ENSMUSG00000056167 ENSMUST00000238809 Cnot10 protein_coding Interval_44783 chr13 48593117 48593563 + 0 NA promoter-TSS (ENSMUSG00000113037.1) antisense-promoter-TSS (ENSMUSG00000113037.1) 20 ENSMUSG00000038042.11 ENSMUSG00000038042 ENSMUST00000223025 Ptpdc1 protein_coding Interval_107022 chr3 103020281 103021569 + 0 NA intron (ENSMUSG00000068823.10, intron 1 of 18) protein_coding-intron (ENSMUSG00000068823.10, intron 1 of 19) -19074 ENSMUSG00000068823.10 ENSMUSG00000068823 ENSMUST00000197844 Csde1 protein_coding Interval_165522 chr9 48991177 48992429 + 0 NA intron (ENSMUSG00000032267.8, intron 1 of 3) protein_coding-intron (ENSMUSG00000032267.8, intron 1 of 23) -26813 ENSMUSG00000008590.4 ENSMUSG00000008590 ENSMUST00000008734 Htr3b protein_coding Interval_167547 chr9 70383658 70384234 + 0 NA exon (ENSMUSG00000032220.10, exon 26 of 28) protein_coding-exon (ENSMUSG00000032220.10, exon 26 of 28) 21807 ENSMUSG00000093763.1 ENSMUSG00000093763 ENSMUST00000176002 Mir5626 miRNA Interval_106240 chr3 94852842 94853383 + 0 NA intron (ENSMUSG00000038902.14, intron 1 of 6) protein_coding-intron (ENSMUSG00000038902.14, intron 1 of 18) 20135 ENSMUSG00000084058.1 ENSMUSG00000084058 ENSMUST00000121556 Gm15263 processed_pseudogene Interval_31340 chr11 100144827 100146611 + 0 NA exon (ENSMUSG00000020911.14, exon 1 of 6) protein_coding-exon (ENSMUSG00000020911.14, exon 1 of 6) -2020 ENSMUSG00000020911.14 ENSMUSG00000020911 ENSMUST00000125888 Krt19 protein_coding Interval_138652 chr6 90781838 90782848 + 0 NA promoter-TSS (ENSMUSG00000034312.15) protein_coding-promoter-TSS (ENSMUSG00000034312.15) -262 ENSMUSG00000034312.15 ENSMUSG00000034312 ENSMUST00000238855 Iqsec1 protein_coding Interval_5800 chr1 91961957 91963667 + 0 NA intron (ENSMUSG00000026313.16, intron 13 of 22) protein_coding-intron (ENSMUSG00000026313.16, intron 16 of 25) -13175 ENSMUSG00000103101.1 ENSMUSG00000103101 ENSMUST00000194827 Gm37048 TEC Interval_149617 chr7 100083853 100084849 + 0 NA intron (ENSMUSG00000030726.16, intron 7 of 7) protein_coding-intron (ENSMUSG00000030726.16, intron 11 of 11) 17109 ENSMUSG00000030726.16 ENSMUSG00000030726 ENSMUST00000156202 Pold3 protein_coding Interval_123917 chr5 36530069 36530917 + 0 NA promoter-TSS (ENSMUSG00000029192.17) protein_coding-promoter-TSS (ENSMUSG00000029192.17) -22831 ENSMUSG00000029192.17 ENSMUSG00000029192 ENSMUST00000147603 Tbc1d14 protein_coding Interval_119016 chr4 135022159 135022403 + 0 NA Intergenic Intergenic 91379 ENSMUSG00000028821.8 ENSMUSG00000028821 ENSMUST00000144037 Syf2 protein_coding Interval_1835 chr1 34073620 34075156 + 0 NA intron (ENSMUSG00000026131.20, intron 1 of 97) protein_coding-intron (ENSMUSG00000026131.20, intron 1 of 97) -2839 ENSMUSG00000026131.20 ENSMUSG00000026131 ENSMUST00000182507 Dst protein_coding Interval_123549 chr5 33438214 33438737 + 0 NA Intergenic Intergenic -1011 ENSMUSG00000107248.1 ENSMUSG00000107248 ENSMUST00000200726 Gm43851 lincRNA Interval_134212 chr6 23075728 23077008 + 0 NA intron (ENSMUSG00000029695.13, intron 20 of 23) protein_coding-intron (ENSMUSG00000029695.13, intron 20 of 23) 56548 ENSMUSG00000029695.13 ENSMUSG00000029695 ENSMUST00000152280 Aass protein_coding Interval_51115 chr14 23562637 23564320 + 0 NA intron (ENSMUSG00000100100.1, intron 1 of 1) protein_coding-intron (ENSMUSG00000063142.15, intron 4 of 28) 3230 ENSMUSG00000100100.1 ENSMUSG00000100100 ENSMUST00000187439 Gm29626 antisense Interval_42177 chr13 9579945 9580532 + 0 NA intron (ENSMUSG00000048264.16, intron 17 of 36) protein_coding-intron (ENSMUSG00000048264.16, intron 17 of 38) 22377 ENSMUSG00000113905.1 ENSMUSG00000113905 ENSMUST00000221729 Gm48872 TEC Interval_648 chr1 9534739 9536402 + 0 NA Intergenic Intergenic -9838 ENSMUSG00000061024.8 ENSMUSG00000061024 ENSMUST00000072079 Rrs1 protein_coding Interval_101766 chr3 9470983 9471618 + 0 NA intron (ENSMUSG00000040209.12, intron 2 of 9) protein_coding-intron (ENSMUSG00000040209.12, intron 3 of 8) -24868 ENSMUSG00000103485.1 ENSMUSG00000103485 ENSMUST00000192900 Gm38001 TEC Interval_137831 chr6 82815854 82816122 + 0 NA Intergenic Intergenic -10905 ENSMUSG00000109556.1 ENSMUSG00000109556 ENSMUST00000209189 Gm38843 lincRNA Interval_172473 chrX 20872987 20873636 + 0 NA intron (ENSMUSG00000001131.11, intron 4 of 5) protein_coding-intron (ENSMUSG00000001131.11, intron 4 of 5) 3145 ENSMUSG00000001131.11 ENSMUSG00000001131 ENSMUST00000009530 Timp1 protein_coding Interval_132862 chr5 148374698 148375917 + 0 NA intron (ENSMUSG00000041313.14, intron 1 of 5) protein_coding-intron (ENSMUSG00000041313.14, intron 1 of 12) 24484 ENSMUSG00000041313.14 ENSMUSG00000041313 ENSMUST00000201348 Slc7a1 protein_coding Interval_12020 chr1 188896591 188896911 + 0 NA intron (ENSMUSG00000026609.15, intron 60 of 70) protein_coding-intron (ENSMUSG00000026609.15, intron 60 of 70) 111090 ENSMUSG00000026608.13 ENSMUSG00000026608 ENSMUST00000193273 Kctd3 protein_coding Interval_59759 chr15 59070575 59071468 + 0 NA intron (ENSMUSG00000022353.10, intron 1 of 2) protein_coding-intron (ENSMUSG00000022353.10, intron 1 of 14) 10984 ENSMUSG00000022353.10 ENSMUSG00000022353 ENSMUST00000227797 Mtss1 protein_coding Interval_90857 chr2 32994926 32995873 + 0 NA intron (ENSMUSG00000038860.15, intron 25 of 29) protein_coding-intron (ENSMUSG00000038860.15, intron 23 of 27) 6916 ENSMUSG00000104277.1 ENSMUSG00000104277 ENSMUST00000193214 Gm38299 TEC Interval_85012 chr19 21424125 21424364 + 0 NA intron (ENSMUSG00000058624.13, intron 4 of 13) protein_coding-intron (ENSMUSG00000058624.13, intron 4 of 13) 16615 ENSMUSG00000058624.13 ENSMUSG00000058624 ENSMUST00000136258 Gda protein_coding Interval_97934 chr2 145887935 145888675 + 0 NA TTS (ENSMUSG00000001768.16) protein_coding-TTS (ENSMUSG00000001768.16) -3777 ENSMUSG00000083014.1 ENSMUSG00000083014 ENSMUST00000120221 Gm11764 processed_pseudogene Interval_92346 chr2 59176122 59177138 + 0 NA intron (ENSMUSG00000026991.20, intron 1 of 4) protein_coding-intron (ENSMUSG00000026991.20, intron 1 of 21) 14703 ENSMUSG00000026991.20 ENSMUSG00000026991 ENSMUST00000124127 Pkp4 protein_coding Interval_110553 chr4 3829984 3830680 + 0 NA Intergenic Intergenic 4814 ENSMUSG00000088351.1 ENSMUSG00000088351 ENSMUST00000157726 Gm24016 snoRNA Interval_73630 chr17 41767619 41767991 + 0 NA Intergenic Intergenic -104117 ENSMUSG00000117001.1 ENSMUSG00000117001 ENSMUST00000232972 Gm49858 processed_pseudogene Interval_27760 chr11 69827906 69829358 + 0 NA promoter-TSS (ENSMUSG00000051790.15) protein_coding-promoter-TSS (ENSMUSG00000051790.15) -73 ENSMUSG00000051790.15 ENSMUSG00000051790 ENSMUST00000140477 Nlgn2 protein_coding Interval_121493 chr4 156171487 156172061 + 0 NA TTS (ENSMUSG00000041936.18) protein_coding-TTS (ENSMUSG00000041936.18) 14333 ENSMUSG00000041936.18 ENSMUSG00000041936 ENSMUST00000144749 Agrn protein_coding Interval_36819 chr12 54376828 54377735 + 0 NA Intergenic Intergenic 14037 ENSMUSG00000113970.1 ENSMUSG00000113970 ENSMUST00000223334 Gm7550 lincRNA Interval_12261 chr1 191204908 191206065 + 0 NA intron (ENSMUSG00000026628.13, intron 1 of 3) protein_coding-intron (ENSMUSG00000026628.13, intron 1 of 3) 8580 ENSMUSG00000088461.1 ENSMUSG00000088461 ENSMUST00000157836 Gm24748 misc_RNA Interval_126141 chr5 78965090 78965299 + 0 NA Intergenic Intergenic 185335 ENSMUSG00000077178.1 ENSMUSG00000077178 ENSMUST00000103990 Gm25756 snoRNA Interval_35155 chr12 17643358 17644871 + 0 NA TTS (ENSMUSG00000088939.1) misc_RNA-TTS (ENSMUSG00000088939.1) 1091 ENSMUSG00000088939.1 ENSMUSG00000088939 ENSMUST00000158314 Gm25925 misc_RNA Interval_72484 chr17 30112461 30113331 + 0 NA intron (ENSMUSG00000044477.12, intron 2 of 5) protein_coding-intron (ENSMUSG00000044477.12, intron 2 of 4) -23294 ENSMUSG00000044477.12 ENSMUSG00000044477 ENSMUST00000234091 Zfand3 protein_coding Interval_67282 chr16 45356113 45357201 + 0 NA Intergenic Intergenic 52350 ENSMUSG00000022661.14 ENSMUSG00000022661 ENSMUST00000172091 Cd200 protein_coding Interval_139242 chr6 97479225 97479662 + 0 NA intron (ENSMUSG00000030064.16, intron 2 of 7) protein_coding-intron (ENSMUSG00000030064.16, intron 1 of 22) 29693 ENSMUSG00000108185.1 ENSMUSG00000108185 ENSMUST00000204326 Gm19653 processed_pseudogene Interval_136252 chr6 52281004 52282623 + 0 NA Intergenic Intergenic 15229 ENSMUSG00000098538.1 ENSMUSG00000098538 ENSMUST00000184459 Gm27866 misc_RNA Interval_96096 chr2 119730675 119731415 + 0 NA intron (ENSMUSG00000027304.9, intron 16 of 17) protein_coding-intron (ENSMUSG00000027304.9, intron 16 of 17) 9911 ENSMUSG00000064722.1 ENSMUSG00000064722 ENSMUST00000082788 Gm25857 snoRNA Interval_132234 chr5 143504250 143504901 + 0 NA TTS (ENSMUSG00000001847.14) protein_coding-TTS (ENSMUSG00000001847.14) 13607 ENSMUSG00000001847.14 ENSMUSG00000001847 ENSMUST00000131513 Rac1 protein_coding Interval_160568 chr8 110760382 110762214 + 0 NA intron (ENSMUSG00000031750.15, intron 1 of 1) protein_coding-intron (ENSMUSG00000031750.15, intron 1 of 6) 6306 ENSMUSG00000090039.1 ENSMUSG00000090039 ENSMUST00000162828 Gm15894 antisense Interval_20867 chr10 121606869 121608625 + 0 NA intron (ENSMUSG00000034667.8, intron 11 of 24) protein_coding-intron (ENSMUSG00000034667.8, intron 11 of 24) -6934 ENSMUSG00000034667.8 ENSMUSG00000034667 ENSMUST00000217865 Xpot protein_coding Interval_172545 chrX 36487785 36488447 + 0 NA intron (ENSMUSG00000091556.8, intron 1 of 7) protein_coding-intron (ENSMUSG00000091556.8, intron 1 of 7) 3714 ENSMUSG00000091556.8 ENSMUSG00000091556 ENSMUST00000167210 Gm14569 protein_coding Interval_171939 chr9 122757038 122757713 + 0 NA intron (ENSMUSG00000094985.2, intron 1 of 4) protein_coding-intron (ENSMUSG00000094985.2, intron 2 of 19) 6772 ENSMUSG00000094985.2 ENSMUSG00000094985 ENSMUST00000213519 Topaz1 protein_coding Interval_60747 chr15 76502135 76503548 + 0 NA TTS (ENSMUSG00000022555.12) protein_coding-TTS (ENSMUSG00000022555.12) 3194 ENSMUSG00000022556.11 ENSMUSG00000022556 ENSMUST00000228688 Hsf1 protein_coding Interval_118751 chr4 133527888 133529040 + 0 NA TTS (ENSMUSG00000037600.16) protein_coding-TTS (ENSMUSG00000037600.16) 7463 ENSMUSG00000028851.6 ENSMUSG00000028851 ENSMUST00000148612 Nudc protein_coding Interval_88829 chr2 11492783 11493119 + 0 NA TTS (ENSMUSG00000026773.19) protein_coding-TTS (ENSMUSG00000026773.19) -28755 ENSMUSG00000102329.1 ENSMUSG00000102329 ENSMUST00000192087 Gm10851 antisense Interval_119162 chr4 135926036 135927533 + 0 NA intron (ENSMUSG00000028673.10, intron 3 of 7) protein_coding-intron (ENSMUSG00000028673.10, intron 3 of 7) -3052 ENSMUSG00000028673.10 ENSMUSG00000028673 ENSMUST00000142111 Fuca1 protein_coding Interval_106416 chr3 96068491 96070713 + 0 NA Intergenic Intergenic -11883 ENSMUSG00000015747.5 ENSMUSG00000015747 ENSMUST00000140518 Vps45 protein_coding Interval_49879 chr13 117549965 117551188 + 0 NA Intergenic Intergenic -51744 ENSMUSG00000021730.8 ENSMUSG00000021730 ENSMUST00000006991 Hcn1 protein_coding Interval_2224 chr1 37186561 37187563 + 0 NA TTS (ENSMUSG00000050122.19) protein_coding-TTS (ENSMUSG00000050122.19) -31317 ENSMUSG00000026114.14 ENSMUSG00000026114 ENSMUST00000027288 Cnga3 protein_coding Interval_110342 chr3 157115664 157115853 + 0 NA intron (ENSMUSG00000040037.13, intron 4 of 6) protein_coding-intron (ENSMUSG00000040037.13, intron 4 of 6) 44014 ENSMUSG00000105803.1 ENSMUSG00000105803 ENSMUST00000196666 Gm43526 TEC Interval_932 chr1 13263188 13263439 + 0 NA intron (ENSMUSG00000005886.14, intron 1 of 3) protein_coding-intron (ENSMUSG00000005886.14, intron 2 of 22) 1115 ENSMUSG00000099183.1 ENSMUSG00000099183 ENSMUST00000183805 Gm27881 miRNA Interval_149526 chr7 99348838 99349315 + 0 NA TTS (ENSMUSG00000070436.12) protein_coding-TTS (ENSMUSG00000070436.12) 4027 ENSMUSG00000070436.12 ENSMUSG00000070436 ENSMUST00000208292 Serpinh1 protein_coding Interval_42567 chr13 15537420 15538564 + 0 NA intron (ENSMUSG00000021318.15, intron 2 of 9) protein_coding-intron (ENSMUSG00000021318.15, intron 2 of 14) -74256 ENSMUSG00000097806.3 ENSMUSG00000097806 ENSMUST00000193256 Gm6556 processed_transcript Interval_5474 chr1 89108343 89110442 + 0 NA intron (ENSMUSG00000036206.12, intron 2 of 5) protein_coding-intron (ENSMUSG00000036206.12, intron 2 of 5) 12319 ENSMUSG00000102700.1 ENSMUSG00000102700 ENSMUST00000195426 Gm38312 TEC Interval_118034 chr4 128505602 128506337 + 0 NA intron (ENSMUSG00000028804.20, intron 44 of 70) protein_coding-intron (ENSMUSG00000028804.20, intron 44 of 70) -46606 ENSMUSG00000028804.20 ENSMUSG00000028804 ENSMUST00000221199 Csmd2 protein_coding Interval_72823 chr17 32396041 32397023 + 0 NA promoter-TSS (ENSMUSG00000117872.1) antisense-promoter-TSS (ENSMUSG00000117872.1) -1161 ENSMUSG00000052142.15 ENSMUSG00000052142 ENSMUST00000135560 Rasal3 protein_coding Interval_76206 chr17 77197401 77199710 + 0 NA Intergenic Intergenic 164655 ENSMUSG00000117578.1 ENSMUSG00000117578 ENSMUST00000234215 Rpsa-ps8 processed_pseudogene Interval_25669 chr11 50601560 50603789 + 0 NA promoter-TSS (ENSMUSG00000085564.1) processed_transcript-promoter-TSS (ENSMUSG00000085564.1) -226 ENSMUSG00000085564.1 ENSMUSG00000085564 ENSMUST00000154068 Gm12198 processed_transcript Interval_119002 chr4 134945507 134946739 + 0 NA Intergenic Intergenic 15221 ENSMUSG00000028821.8 ENSMUSG00000028821 ENSMUST00000144037 Syf2 protein_coding Interval_161770 chr8 122666684 122666985 + 0 NA intron (ENSMUSG00000006362.16, intron 1 of 1) protein_coding-intron (ENSMUSG00000006362.16, intron 1 of 10) 17005 ENSMUSG00000085917.1 ENSMUSG00000085917 ENSMUST00000128586 Gm15899 processed_pseudogene Interval_143038 chr6 148805205 148805417 + 0 NA intron (ENSMUSG00000040029.15, intron 8 of 9) protein_coding-intron (ENSMUSG00000040029.15, intron 9 of 24) -5479 ENSMUSG00000040029.15 ENSMUSG00000040029 ENSMUST00000205196 Ipo8 protein_coding Interval_85239 chr19 24119018 24119885 + 0 NA intron (ENSMUSG00000024812.11, intron 12 of 23) protein_coding-intron (ENSMUSG00000024812.11, intron 11 of 22) 27616 ENSMUSG00000024812.11 ENSMUSG00000024812 ENSMUST00000237550 Tjp2 protein_coding Interval_39635 chr12 91699231 91699870 + 0 NA intron (ENSMUSG00000020961.15, intron 3 of 4) protein_coding-intron (ENSMUSG00000020961.15, intron 4 of 6) -13437 ENSMUSG00000090722.8 ENSMUSG00000090722 ENSMUST00000167777 Gm8378 sense_intronic Interval_155003 chr8 25617288 25618332 + 0 NA intron (ENSMUSG00000054823.16, intron 1 of 9) protein_coding-intron (ENSMUSG00000054823.16, intron 1 of 7) -7252 ENSMUSG00000084543.1 ENSMUSG00000084543 ENSMUST00000122594 Gm23184 snoRNA Interval_66093 chr16 31557463 31559207 + 0 NA Intergenic Intergenic 34885 ENSMUSG00000116793.1 ENSMUSG00000116793 ENSMUST00000232216 Gm34256 lincRNA Interval_158431 chr8 83692743 83693067 + 0 NA exon (ENSMUSG00000057672.16, exon 2 of 22) protein_coding-exon (ENSMUSG00000057672.16, exon 2 of 22) -15070 ENSMUSG00000057672.16 ENSMUSG00000057672 ENSMUST00000135356 Pkn1 protein_coding Interval_101888 chr3 10393597 10393906 + 0 NA exon (ENSMUSG00000027536.6, exon 5 of 5) protein_coding-exon (ENSMUSG00000027536.6, exon 5 of 5) 26793 ENSMUSG00000027536.6 ENSMUSG00000027536 ENSMUST00000191826 Chmp4c protein_coding Interval_132272 chr5 143817126 143818558 + 0 NA promoter-TSS (ENSMUSG00000029613.15) protein_coding-promoter-TSS (ENSMUSG00000029613.15) -105 ENSMUSG00000029613.15 ENSMUSG00000029613 ENSMUST00000154767 Eif2ak1 protein_coding Interval_173363 chrX 85053757 85054155 + 0 NA intron (ENSMUSG00000045103.19, intron 1 of 12) protein_coding-intron (ENSMUSG00000045103.19, intron 1 of 17) 174069 ENSMUSG00000084281.1 ENSMUSG00000084281 ENSMUST00000122197 Gm14770 processed_pseudogene Interval_132374 chr5 144554345 144554556 + 0 NA intron (ENSMUSG00000059991.7, intron 3 of 4) protein_coding-intron (ENSMUSG00000059991.7, intron 3 of 4) 8548 ENSMUSG00000059991.7 ENSMUSG00000059991 ENSMUST00000071782 Nptx2 protein_coding Interval_83443 chr18 85572659 85573368 + 0 NA Intergenic Intergenic 143712 ENSMUSG00000117854.1 ENSMUSG00000117854 ENSMUST00000237113 Gm7612 processed_pseudogene Interval_164274 chr9 34871214 34872319 + 0 NA intron (ENSMUSG00000032036.15, intron 1 of 15) protein_coding-intron (ENSMUSG00000032036.15, intron 1 of 16) 57743 ENSMUSG00000053889.5 ENSMUSG00000053889 ENSMUST00000066604 Kirrel3os antisense Interval_22243 chr11 7943598 7943846 + 0 NA Intergenic Intergenic 52130 ENSMUSG00000084318.1 ENSMUSG00000084318 ENSMUST00000118524 Gm11987 unprocessed_pseudogene Interval_96369 chr2 122022097 122022880 + 0 NA Intergenic Intergenic -6154 ENSMUSG00000104603.1 ENSMUSG00000104603 ENSMUST00000197244 Gm47314 miRNA Interval_54146 chr14 65693619 65693893 + 0 NA intron (ENSMUSG00000022032.14, intron 3 of 7) protein_coding-intron (ENSMUSG00000022032.14, intron 3 of 8) 17279 ENSMUSG00000022032.14 ENSMUSG00000022032 ENSMUST00000154373 Scara5 protein_coding Interval_118482 chr4 131936714 131937098 + 0 NA exon (ENSMUSG00000028906.17, exon 1 of 5) protein_coding-exon (ENSMUSG00000028906.17, exon 1 of 5) -15378 ENSMUSG00000118394.1 ENSMUSG00000118394 ENSMUST00000238664 Gm50475 lincRNA Interval_30738 chr11 96199776 96200464 + 0 NA promoter-TSS (ENSMUSG00000099107.1) misc_RNA-promoter-TSS (ENSMUSG00000099107.1) 191 ENSMUSG00000099133.1 ENSMUSG00000099133 ENSMUST00000184648 Gm27605 misc_RNA Interval_160696 chr8 111656913 111657702 + 0 NA intron (ENSMUSG00000055835.10, intron 1 of 4) protein_coding-intron (ENSMUSG00000055835.10, intron 1 of 3) 13827 ENSMUSG00000055835.10 ENSMUSG00000055835 ENSMUST00000211926 Zfp1 protein_coding Interval_5107 chr1 85703347 85704073 + 0 NA intron (ENSMUSG00000026222.16, intron 1 of 4) protein_coding-intron (ENSMUSG00000026222.16, intron 17 of 19) 28828 ENSMUSG00000064414.1 ENSMUSG00000064414 ENSMUST00000082480 n-R5s215 rRNA Interval_20724 chr10 120546413 120547436 + 0 NA Intergenic Intergenic -58613 ENSMUSG00000088924.1 ENSMUSG00000088924 ENSMUST00000158299 Gm24298 snoRNA Interval_128472 chr5 113512449 113512661 + 0 NA intron (ENSMUSG00000063430.9, intron 1 of 1) protein_coding-intron (ENSMUSG00000063430.9, intron 1 of 8) -66233 ENSMUSG00000063430.9 ENSMUSG00000063430 ENSMUST00000198673 Wscd2 protein_coding Interval_15290 chr10 44148480 44149501 + 0 NA promoter-TSS (ENSMUSG00000019866.15) protein_coding-promoter-TSS (ENSMUSG00000019866.15) -4480 ENSMUSG00000111122.1 ENSMUSG00000111122 ENSMUST00000213468 Gm5949 processed_pseudogene Interval_150356 chr7 109874648 109876472 + 0 NA Intergenic Intergenic 21996 ENSMUSG00000035901.14 ENSMUSG00000035901 ENSMUST00000151923 Dennd5a protein_coding Interval_56464 chr14 118924496 118925838 + 0 NA exon (ENSMUSG00000042156.16, exon 1 of 22) protein_coding-exon (ENSMUSG00000042156.16, exon 1 of 22) -12809 ENSMUSG00000022136.8 ENSMUSG00000022136 ENSMUST00000022734 Dnajc3 protein_coding Interval_53931 chr14 63484615 63484984 + 0 NA Intergenic Intergenic -8900 ENSMUSG00000090374.1 ENSMUSG00000090374 ENSMUST00000164515 Gm17232 antisense Interval_122385 chr5 21865196 21866714 + 0 NA promoter-TSS (ENSMUSG00000029015.9) protein_coding-promoter-TSS (ENSMUSG00000029015.9) -23825 ENSMUSG00000090008.1 ENSMUSG00000090008 ENSMUST00000162128 Gm16111 processed_pseudogene Interval_159981 chr8 105565384 105566895 + 0 NA promoter-TSS (ENSMUSG00000013160.7) protein_coding-promoter-TSS (ENSMUSG00000013160.7) -185 ENSMUSG00000104168.1 ENSMUSG00000104168 ENSMUST00000192691 Gm38250 antisense Interval_103149 chr3 35957016 35957771 + 0 NA intron (ENSMUSG00000085655.5, intron 2 of 2) antisense-intron (ENSMUSG00000085655.5, intron 2 of 2) -1136 ENSMUSG00000105095.1 ENSMUSG00000105095 ENSMUST00000199608 8430422M14Rik TEC Interval_74628 chr17 53940653 53941477 + 0 NA TTS (ENSMUSG00000105147.1) processed_pseudogene-TTS (ENSMUSG00000105147.1) 1040 ENSMUSG00000105147.1 ENSMUSG00000105147 ENSMUST00000199192 Ckb-ps1 processed_pseudogene Interval_38130 chr12 75853113 75853837 + 0 NA intron (ENSMUSG00000063450.14, intron 1 of 4) protein_coding-intron (ENSMUSG00000063450.14, intron 1 of 115) 35125 ENSMUSG00000063450.14 ENSMUSG00000063450 ENSMUST00000151286 Syne2 protein_coding Interval_86363 chr19 38972574 38972804 + 0 NA Intergenic Intergenic -3958 ENSMUSG00000114610.1 ENSMUSG00000114610 ENSMUST00000225458 Cyp2c52-ps unprocessed_pseudogene Interval_46332 chr13 64024775 64025193 + 0 NA Intergenic Intergenic 64217 ENSMUSG00000033122.14 ENSMUSG00000033122 ENSMUST00000222810 Hsd17b3 protein_coding Interval_10288 chr1 168065216 168066128 + 0 NA intron (ENSMUSG00000093538.2, intron 1 of 2) antisense-intron (ENSMUSG00000093538.2, intron 1 of 2) 61533 ENSMUSG00000093538.2 ENSMUSG00000093538 ENSMUST00000177351 Gm20711 antisense Interval_54521 chr14 70442611 70444071 + 0 NA promoter-TSS (ENSMUSG00000065528.1) miRNA-promoter-TSS (ENSMUSG00000065528.1) -169 ENSMUSG00000065528.1 ENSMUSG00000065528 ENSMUST00000083594 Mir320 miRNA Interval_109414 chr3 142039476 142039785 + 0 NA intron (ENSMUSG00000052430.15, intron 1 of 11) protein_coding-intron (ENSMUSG00000052430.15, intron 2 of 11) -108122 ENSMUSG00000052430.15 ENSMUSG00000052430 ENSMUST00000106230 Bmpr1b protein_coding Interval_113157 chr4 48682419 48684234 + 0 NA Intergenic Intergenic 8170 ENSMUSG00000080850.1 ENSMUSG00000080850 ENSMUST00000117162 Gm12439 processed_pseudogene Interval_17808 chr10 80199232 80200649 + 0 NA Intergenic Intergenic 20458 ENSMUSG00000003070.6 ENSMUSG00000003070 ENSMUST00000003154 Efna2 protein_coding Interval_76184 chr17 76294769 76295006 + 0 NA Intergenic Intergenic -10026 ENSMUSG00000066958.1 ENSMUSG00000066958 ENSMUST00000086601 Gm16391 processed_pseudogene Interval_27765 chr11 69855046 69855972 + 0 NA promoter-TSS (ENSMUSG00000001583.13) protein_coding-promoter-TSS (ENSMUSG00000001583.13) 93 ENSMUSG00000001583.13 ENSMUSG00000001583 ENSMUST00000125571 Tnk1 protein_coding Interval_28175 chr11 73498468 73499540 + 0 NA Intergenic Intergenic -7526 ENSMUSG00000072708.3 ENSMUSG00000072708 ENSMUST00000119863 Olfr381 protein_coding Interval_23693 chr11 24634727 24635315 + 0 NA intron (ENSMUSG00000087085.1, intron 2 of 3) lincRNA-intron (ENSMUSG00000087085.1, intron 2 of 3) 44690 ENSMUSG00000080631.1 ENSMUSG00000080631 ENSMUST00000116981 Gm25507 miRNA Interval_294 KZ289089.1 203473 203947 + 0 NA NA NA NA NA Interval_26674 chr11 59613520 59614765 + 0 NA TTS (ENSMUSG00000044061.7) polymorphic_pseudogene-TTS (ENSMUSG00000044061.7) 3557 ENSMUSG00000044061.7 ENSMUSG00000044061 ENSMUST00000055276 Olfr225 polymorphic_pseudogene Interval_135995 chr6 49318797 49319827 + 0 NA promoter-TSS (ENSMUSG00000050786.8) protein_coding-promoter-TSS (ENSMUSG00000050786.8) 5 ENSMUSG00000050786.8 ENSMUSG00000050786 ENSMUST00000114491 Ccdc126 protein_coding Interval_41256 chr12 112178014 112178232 + 0 NA exon (ENSMUSG00000021294.7, exon 12 of 16) protein_coding-exon (ENSMUSG00000021294.7, exon 12 of 16) -1031 ENSMUSG00000021294.7 ENSMUSG00000021294 ENSMUST00000183816 Kif26a protein_coding Interval_11106 chr1 179407483 179409619 + 0 NA intron (ENSMUSG00000055067.15, intron 4 of 11) protein_coding-intron (ENSMUSG00000055067.15, intron 4 of 5) 109454 ENSMUSG00000055067.15 ENSMUSG00000055067 ENSMUST00000194237 Smyd3 protein_coding Interval_23734 chr11 25596941 25597156 + 0 NA Intergenic Intergenic -88092 ENSMUSG00000064761.1 ENSMUSG00000064761 ENSMUST00000082827 Gm23514 snoRNA Interval_2261 chr1 37476251 37476689 + 0 NA intron (ENSMUSG00000026110.15, intron 4 of 14) protein_coding-intron (ENSMUSG00000026110.15, intron 4 of 14) 12135 ENSMUSG00000103948.1 ENSMUSG00000103948 ENSMUST00000192316 4930594C11Rik TEC Interval_174668 chrX 162759450 162761486 + 0 NA promoter-TSS (ENSMUSG00000031353.13) protein_coding-promoter-TSS (ENSMUSG00000031353.13) 11912 ENSMUSG00000104536.1 ENSMUSG00000104536 ENSMUST00000200181 Gm23786 snoRNA Interval_113401 chr4 54497500 54498212 + 0 NA Intergenic Intergenic 29504 ENSMUSG00000093183.2 ENSMUSG00000093183 ENSMUST00000175442 Gm25687 misc_RNA Interval_85981 chr19 34621205 34621615 + 0 NA intron (ENSMUSG00000067297.5, intron 2 of 2) protein_coding-intron (ENSMUSG00000067297.5, intron 2 of 2) -2272 ENSMUSG00000118260.1 ENSMUSG00000118260 ENSMUST00000236558 Cnn2-ps processed_pseudogene Interval_15984 chr10 59930773 59931491 + 0 NA Intergenic Intergenic 20702 ENSMUSG00000020108.4 ENSMUSG00000020108 ENSMUST00000020308 Ddit4 protein_coding Interval_132231 chr5 143491808 143492039 + 0 NA intron (ENSMUSG00000039206.13, intron 9 of 14) protein_coding-intron (ENSMUSG00000039206.13, intron 9 of 14) 19006 ENSMUSG00000039206.13 ENSMUSG00000039206 ENSMUST00000155383 Daglb protein_coding Interval_63792 chr15 103462586 103462778 + 0 NA exon (ENSMUSG00000022488.9, exon 7 of 31) protein_coding-exon (ENSMUSG00000022488.9, exon 7 of 31) -14213 ENSMUSG00000053508.8 ENSMUSG00000053508 ENSMUST00000229158 Gtsf2 protein_coding Interval_136118 chr6 51189106 51189344 + 0 NA Intergenic Intergenic 80685 ENSMUSG00000065505.1 ENSMUSG00000065505 ENSMUST00000083571 Mir148a miRNA Interval_142356 chr6 140844880 140845095 + 0 NA Intergenic Intergenic -60283 ENSMUSG00000108039.1 ENSMUSG00000108039 ENSMUST00000203498 Gm43925 processed_pseudogene Interval_1346 chr1 20819677 20820735 + 0 NA promoter-TSS (ENSMUSG00000041859.10) protein_coding-promoter-TSS (ENSMUSG00000041859.10) -1125 ENSMUSG00000099714.1 ENSMUSG00000099714 ENSMUST00000186367 Gm20587 processed_pseudogene Interval_113930 chr4 59927786 59928632 + 0 NA Intergenic Intergenic -13153 ENSMUSG00000028386.1 ENSMUSG00000028386 ENSMUST00000030081 Slc46a2 protein_coding Interval_20333 chr10 116949641 116950757 + 0 NA promoter-TSS (ENSMUSG00000112627.1) bidirectional_promoter_lncRNA-promoter-TSS (ENSMUSG00000112627.1) -368 ENSMUSG00000112627.1 ENSMUSG00000112627 ENSMUST00000217853 4933412E12Rik bidirectional_promoter_lncRNA Interval_18522 chr10 86908414 86909539 + 0 NA promoter-TSS (ENSMUSG00000089775.1) transcribed_processed_pseudogene-promoter-TSS (ENSMUSG00000089775.1) 215 ENSMUSG00000089881.1 ENSMUSG00000089881 ENSMUST00000162458 Gm16280 antisense Interval_106926 chr3 101985411 101985856 + 0 NA Intergenic Intergenic -24522 ENSMUSG00000048540.8 ENSMUSG00000048540 ENSMUST00000198675 Nhlh2 protein_coding Interval_174162 chrX 136978762 136979179 + 0 NA Intergenic Intergenic -2096 ENSMUSG00000089768.2 ENSMUSG00000089768 ENSMUST00000113071 Tmsb15b1 protein_coding Interval_8788 chr1 151110685 151110926 + 0 NA Intergenic Intergenic 2890 ENSMUSG00000100595.1 ENSMUSG00000100595 ENSMUST00000191430 Gm19087 processed_pseudogene Interval_59133 chr15 44599029 44599808 + 0 NA intron (ENSMUSG00000038725.13, intron 77 of 77) protein_coding-intron (ENSMUSG00000038725.13, intron 77 of 77) -20011 ENSMUSG00000022339.9 ENSMUSG00000022339 ENSMUST00000022964 Ebag9 protein_coding Interval_110848 chr4 8942874 8944644 + 0 NA Intergenic Intergenic 2500 ENSMUSG00000083786.1 ENSMUSG00000083786 ENSMUST00000119493 Rps18-ps2 processed_pseudogene Interval_147922 chr7 75571080 75571302 + 0 NA intron (ENSMUSG00000066406.16, intron 3 of 5) protein_coding-intron (ENSMUSG00000066406.16, intron 3 of 36) 10577 ENSMUSG00000108557.1 ENSMUSG00000108557 ENSMUST00000205544 Gm44835 TEC Interval_119103 chr4 135573163 135573964 + 0 NA promoter-TSS (ENSMUSG00000037188.7) protein_coding-promoter-TSS (ENSMUSG00000037188.7) 67 ENSMUSG00000037188.7 ENSMUSG00000037188 ENSMUST00000105855 Grhl3 protein_coding Interval_148742 chr7 84981472 84982776 + 0 NA Intergenic Intergenic -18009 ENSMUSG00000066372.6 ENSMUSG00000066372 ENSMUST00000233469 Vmn2r65 protein_coding Interval_55397 chr14 86675170 86676312 + 0 NA intron (ENSMUSG00000022021.14, intron 1 of 3) protein_coding-intron (ENSMUSG00000022021.14, intron 27 of 27) 31444 ENSMUSG00000115306.1 ENSMUSG00000115306 ENSMUST00000226731 Gm49159 TEC Interval_20347 chr10 117033899 117035755 + 0 NA Intergenic Intergenic -8919 ENSMUSG00000112242.1 ENSMUSG00000112242 ENSMUST00000217799 Gm10747 lincRNA Interval_84799 chr19 16831522 16831707 + 0 NA Intergenic Intergenic 42191 ENSMUSG00000056829.4 ENSMUSG00000056829 ENSMUST00000072915 Foxb2 protein_coding Interval_167300 chr9 67134400 67134689 + 0 NA intron (ENSMUSG00000111556.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000111556.1, intron 1 of 2) 983 ENSMUSG00000111556.1 ENSMUSG00000111556 ENSMUST00000215724 Gm19299 lincRNA Interval_140467 chr6 118454155 118455853 + 0 NA promoter-TSS (ENSMUSG00000030145.14) protein_coding-promoter-TSS (ENSMUSG00000030145.14) 498 ENSMUSG00000030145.14 ENSMUSG00000030145 ENSMUST00000159254 Zfp248 protein_coding Interval_69274 chr16 91839073 91839861 + 0 NA promoter-TSS (ENSMUSG00000022957.20) protein_coding-promoter-TSS (ENSMUSG00000022957.20) -64596 ENSMUSG00000022957.20 ENSMUSG00000022957 ENSMUST00000137575 Itsn1 protein_coding Interval_16790 chr10 68179528 68181893 + 0 NA intron (ENSMUSG00000019947.10, intron 4 of 10) protein_coding-intron (ENSMUSG00000019947.10, intron 4 of 10) 98030 ENSMUSG00000019947.10 ENSMUSG00000019947 ENSMUST00000218425 Arid5b protein_coding Interval_109290 chr3 138692417 138692924 + 0 NA Intergenic Intergenic 34314 ENSMUSG00000105838.1 ENSMUSG00000105838 ENSMUST00000197761 4930425O10Rik lincRNA Interval_73415 chr17 37072075 37073361 + 0 NA TTS (ENSMUSG00000024462.17) protein_coding-TTS (ENSMUSG00000024462.17) 15767 ENSMUSG00000056600.4 ENSMUSG00000056600 ENSMUST00000207101 Olfr90 protein_coding Interval_8572 chr1 143145600 143146648 + 0 NA Intergenic Intergenic -51508 ENSMUSG00000101795.2 ENSMUSG00000101795 ENSMUST00000185806 Gm5835 processed_pseudogene Interval_77979 chr18 6318668 6319084 + 0 NA Intergenic Intergenic -13756 ENSMUSG00000073640.3 ENSMUSG00000073640 ENSMUST00000097682 Rpl27-ps3 processed_pseudogene Interval_59203 chr15 47973629 47974774 + 0 NA intron (ENSMUSG00000022311.15, intron 18 of 70) protein_coding-intron (ENSMUSG00000022311.15, intron 18 of 70) 173528 ENSMUSG00000077752.1 ENSMUSG00000077752 ENSMUST00000104564 Gm23530 snoRNA Interval_22892 chr11 17158721 17160504 + 0 NA intron (ENSMUSG00000033953.10, intron 1 of 5) protein_coding-intron (ENSMUSG00000033953.10, intron 1 of 5) -22495 ENSMUSG00000078970.5 ENSMUSG00000078970 ENSMUST00000046955 Wdr92 protein_coding Interval_10826 chr1 175692088 175693293 + 0 NA promoter-TSS (ENSMUSG00000026525.9) protein_coding-promoter-TSS (ENSMUSG00000026525.9) -60 ENSMUSG00000078185.3 ENSMUSG00000078185 ENSMUST00000211489 Chml protein_coding Interval_66495 chr16 34322459 34323034 + 0 NA intron (ENSMUSG00000061751.16, intron 6 of 30) protein_coding-intron (ENSMUSG00000061751.16, intron 6 of 59) -226718 ENSMUSG00000061751.16 ENSMUSG00000061751 ENSMUST00000132569 Kalrn protein_coding Interval_98792 chr2 154990550 154990963 + 0 NA intron (ENSMUSG00000027596.10, intron 3 of 4) protein_coding-intron (ENSMUSG00000027596.10, intron 1 of 3) -22716 ENSMUSG00000027596.10 ENSMUSG00000027596 ENSMUST00000148300 a protein_coding Interval_131430 chr5 137140640 137141577 + 0 NA intron (ENSMUSG00000037390.12, intron 6 of 10) protein_coding-intron (ENSMUSG00000037390.12, intron 6 of 10) -1981 ENSMUSG00000037390.12 ENSMUSG00000037390 ENSMUST00000160630 Muc3 protein_coding Interval_68500 chr16 78264343 78266069 + 0 NA intron (ENSMUSG00000109841.2, intron 1 of 2) processed_transcript-intron (ENSMUSG00000109841.2, intron 1 of 2) 14153 ENSMUSG00000116798.1 ENSMUSG00000116798 ENSMUST00000231924 Gm49591 processed_pseudogene Interval_2373 chr1 38746747 38746939 + 0 NA Intergenic Intergenic -20341 ENSMUSG00000103531.1 ENSMUSG00000103531 ENSMUST00000192930 2610300A13Rik TEC Interval_10249 chr1 167566636 167567089 + 0 NA Intergenic Intergenic -31598 ENSMUSG00000015843.10 ENSMUSG00000015843 ENSMUST00000111380 Rxrg protein_coding Interval_58452 chr15 34672100 34672618 + 0 NA intron (ENSMUSG00000038879.8, intron 1 of 4) protein_coding-intron (ENSMUSG00000038879.8, intron 1 of 10) -2714 ENSMUSG00000115526.1 ENSMUSG00000115526 ENSMUST00000228853 4930413F20Rik antisense Interval_113904 chr4 59765031 59766405 + 0 NA Intergenic Intergenic 32460 ENSMUSG00000045071.14 ENSMUSG00000045071 ENSMUST00000221633 E130308A19Rik protein_coding Interval_172898 chrX 53000932 53001185 + 0 NA intron (ENSMUSG00000025630.8, intron 2 of 8) protein_coding-intron (ENSMUSG00000025630.8, intron 2 of 8) 12921 ENSMUSG00000025630.8 ENSMUSG00000025630 ENSMUST00000026723 Hprt protein_coding Interval_63711 chr15 102981440 102982375 + 0 NA TTS (ENSMUSG00000036139.6) protein_coding-TTS (ENSMUSG00000036139.6) 5468 ENSMUSG00000036139.6 ENSMUSG00000036139 ENSMUST00000001706 Hoxc9 protein_coding Interval_12690 chr10 4341194 4341894 + 0 NA intron (ENSMUSG00000038587.10, intron 1 of 1) protein_coding-intron (ENSMUSG00000038587.10, intron 2 of 3) 6999 ENSMUSG00000038587.10 ENSMUSG00000038587 ENSMUST00000215696 Akap12 protein_coding Interval_10774 chr1 174592385 174592826 + 0 NA intron (ENSMUSG00000028354.13, intron 3 of 17) protein_coding-intron (ENSMUSG00000028354.13, intron 3 of 17) -17204 ENSMUSG00000028354.13 ENSMUSG00000028354 ENSMUST00000193905 Fmn2 protein_coding Interval_164112 chr9 31577235 31578363 + 0 NA intron (ENSMUSG00000111853.1, intron 2 of 3) lincRNA-intron (ENSMUSG00000111853.1, intron 2 of 3) -9553 ENSMUSG00000110952.1 ENSMUSG00000110952 ENSMUST00000215261 Gm18226 processed_pseudogene Interval_85282 chr19 24328078 24328309 + 0 NA intron (ENSMUSG00000024867.14, intron 12 of 13) protein_coding-intron (ENSMUSG00000024867.14, intron 13 of 14) 38477 ENSMUSG00000082107.1 ENSMUSG00000082107 ENSMUST00000118970 Gm16216 processed_pseudogene Interval_132755 chr5 147633829 147634893 + 0 NA promoter-TSS (ENSMUSG00000029648.13) protein_coding-promoter-TSS (ENSMUSG00000029648.13) 12446 ENSMUSG00000029648.13 ENSMUSG00000029648 ENSMUST00000031652 Flt1 protein_coding Interval_153342 chr7 143763905 143764578 + 0 NA TTS (ENSMUSG00000050276.7) protein_coding-TTS (ENSMUSG00000050276.7) 1335 ENSMUSG00000050276.7 ENSMUSG00000050276 ENSMUST00000208986 Mrgprg protein_coding Interval_143440 chr7 6799874 6800195 + 0 NA intron (ENSMUSG00000051527.11, intron 2 of 7) protein_coding-intron (ENSMUSG00000051527.11, intron 2 of 7) -3553 ENSMUSG00000092815.1 ENSMUSG00000092815 ENSMUST00000175074 Mir3099 miRNA Interval_85209 chr19 23780061 23780253 + 0 NA intron (ENSMUSG00000024897.9, intron 1 of 12) protein_coding-intron (ENSMUSG00000024897.9, intron 1 of 12) -20381 ENSMUSG00000118287.1 ENSMUSG00000118287 ENSMUST00000236371 Gm50300 processed_pseudogene Interval_125838 chr5 74874258 74874886 + 0 NA Intergenic Intergenic -8763 ENSMUSG00000106806.1 ENSMUSG00000106806 ENSMUST00000202480 Gm17906 processed_pseudogene Interval_118949 chr4 134652208 134653926 + 0 NA intron (ENSMUSG00000037306.13, intron 1 of 8) protein_coding-intron (ENSMUSG00000037306.13, intron 2 of 12) 50700 ENSMUSG00000037306.13 ENSMUSG00000037306 ENSMUST00000176606 Man1c1 protein_coding Interval_6994 chr1 121609341 121609542 + 0 NA Intergenic Intergenic 36408 ENSMUSG00000102006.1 ENSMUSG00000102006 ENSMUST00000185259 Gm28591 processed_pseudogene Interval_133883 chr6 14200860 14201177 + 0 NA Intergenic Intergenic 87702 ENSMUSG00000088975.1 ENSMUSG00000088975 ENSMUST00000158350 Gm23760 snoRNA Interval_1892 chr1 34376057 34376277 + 0 NA Intergenic Intergenic 8796 ENSMUSG00000101206.1 ENSMUSG00000101206 ENSMUST00000187302 Gm5266 processed_pseudogene Interval_96134 chr2 119958989 119959181 + 0 NA intron (ENSMUSG00000033943.15, intron 19 of 20) protein_coding-intron (ENSMUSG00000033943.15, intron 21 of 24) -13818 ENSMUSG00000033902.12 ENSMUSG00000033902 ENSMUST00000148161 Mapkbp1 protein_coding Interval_123569 chr5 33529134 33530062 + 0 NA Intergenic Intergenic -92134 ENSMUSG00000107248.1 ENSMUSG00000107248 ENSMUST00000200726 Gm43851 lincRNA Interval_26002 chr11 53425179 53425945 + 0 NA Intergenic Intergenic -2392 ENSMUSG00000036216.5 ENSMUSG00000036216 ENSMUST00000036045 Leap2 protein_coding Interval_73197 chr17 35532299 35533245 + 0 NA promoter-TSS (ENSMUSG00000024409.8) protein_coding-promoter-TSS (ENSMUSG00000024409.8) -429 ENSMUSG00000024409.8 ENSMUSG00000024409 ENSMUST00000025273 Psors1c2 protein_coding Interval_74144 chr17 46787212 46788555 + 0 NA Intergenic Intergenic -5246 ENSMUSG00000063888.7 ENSMUSG00000063888 ENSMUST00000233919 Rpl7l1 protein_coding Interval_16913 chr10 69852349 69852639 + 0 NA intron (ENSMUSG00000069601.14, intron 9 of 42) protein_coding-intron (ENSMUSG00000069601.14, intron 1 of 16) -286133 ENSMUSG00000112729.1 ENSMUSG00000112729 ENSMUST00000220152 Gm46231 processed_pseudogene Interval_155311 chr8 31149371 31150984 + 0 NA promoter-TSS (ENSMUSG00000031577.10) protein_coding-promoter-TSS (ENSMUSG00000031577.10) -150 ENSMUSG00000031577.10 ENSMUSG00000031577 ENSMUST00000209986 Tti2 protein_coding Interval_13360 chr10 17143334 17143992 + 0 NA Intergenic Intergenic 26859 ENSMUSG00000088436.1 ENSMUSG00000088436 ENSMUST00000157811 Gm25382 snRNA Interval_64645 chr16 13853042 13854957 + 0 NA intron (ENSMUSG00000022680.14, intron 13 of 13) protein_coding-intron (ENSMUSG00000022680.14, intron 13 of 23) 34767 ENSMUSG00000099314.1 ENSMUSG00000099314 ENSMUST00000183701 Gm27734 miRNA Interval_91569 chr2 43583411 43583839 + 0 NA intron (ENSMUSG00000026866.16, intron 3 of 12) protein_coding-intron (ENSMUSG00000026866.16, intron 3 of 13) -64227 ENSMUSG00000080994.2 ENSMUSG00000080994 ENSMUST00000119418 Gm13464 processed_pseudogene Interval_112796 chr4 45046591 45046843 + 0 NA intron (ENSMUSG00000048232.12, intron 2 of 2) protein_coding-intron (ENSMUSG00000048232.12, intron 5 of 10) 11901 ENSMUSG00000048232.12 ENSMUSG00000048232 ENSMUST00000155583 Fbxo10 protein_coding Interval_112930 chr4 46137784 46139289 + 0 NA promoter-TSS (ENSMUSG00000028330.8) protein_coding-promoter-TSS (ENSMUSG00000028330.8) -123 ENSMUSG00000035495.15 ENSMUSG00000035495 ENSMUST00000156021 Tstd2 protein_coding Interval_93489 chr2 73498815 73499009 + 0 NA intron (ENSMUSG00000075284.10, intron 1 of 2) protein_coding-intron (ENSMUSG00000075284.10, intron 1 of 7) 39207 ENSMUSG00000086069.1 ENSMUSG00000086069 ENSMUST00000145170 Gm13708 lincRNA Interval_11170 chr1 179830780 179831090 + 0 NA Intergenic Intergenic 27559 ENSMUSG00000073486.2 ENSMUSG00000073486 ENSMUST00000097454 Gm10518 antisense Interval_96857 chr2 129038461 129040249 + 0 NA exon (ENSMUSG00000079051.5, exon 3 of 7) protein_coding-exon (ENSMUSG00000079051.5, exon 3 of 7) 8817 ENSMUSG00000079051.5 ENSMUSG00000079051 ENSMUST00000145798 Vinac1 protein_coding Interval_32269 chr11 106625381 106626301 + 0 NA Intergenic Intergenic 37485 ENSMUSG00000020717.19 ENSMUSG00000020717 ENSMUST00000124958 Pecam1 protein_coding Interval_128577 chr5 114126716 114128331 + 0 NA TTS (ENSMUSG00000044339.12) protein_coding-TTS (ENSMUSG00000044339.12) 658 ENSMUSG00000044339.12 ENSMUSG00000044339 ENSMUST00000149418 Alkbh2 protein_coding Interval_132078 chr5 142658707 142658882 + 0 NA exon (ENSMUSG00000029578.15, exon 4 of 6) protein_coding-exon (ENSMUSG00000029578.15, exon 4 of 6) 31096 ENSMUSG00000029578.15 ENSMUSG00000029578 ENSMUST00000143980 Wipi2 protein_coding Interval_128656 chr5 114547998 114549402 + 0 NA Intergenic Intergenic -2589 ENSMUSG00000086302.1 ENSMUSG00000086302 ENSMUST00000156209 Gm13790 lincRNA Interval_101752 chr3 9398031 9399047 + 0 NA Intergenic Intergenic -3636 ENSMUSG00000088229.1 ENSMUSG00000088229 ENSMUST00000157604 Gm22604 misc_RNA Interval_54168 chr14 65880110 65880564 + 0 NA Intergenic Intergenic 42977 ENSMUSG00000022035.6 ENSMUSG00000022035 ENSMUST00000226027 Ccdc25 protein_coding Interval_5076 chr1 84818173 84819335 + 0 NA intron (ENSMUSG00000026219.14, intron 1 of 40) protein_coding-intron (ENSMUSG00000026219.14, intron 1 of 40) 5929 ENSMUSG00000104503.1 ENSMUSG00000104503 ENSMUST00000192396 Gm37738 TEC Interval_163644 chr9 23027284 23028216 + 0 NA Intergenic Intergenic -195536 ENSMUSG00000031963.8 ENSMUSG00000031963 ENSMUST00000214050 Bmper protein_coding Interval_111653 chr4 25280966 25282131 + 0 NA intron (ENSMUSG00000040359.14, intron 1 of 18) protein_coding-intron (ENSMUSG00000040359.14, intron 1 of 17) 212 ENSMUSG00000040359.14 ENSMUSG00000040359 ENSMUST00000132558 Ufl1 protein_coding Interval_131585 chr5 138323500 138324958 + 0 NA Intergenic Intergenic -17732 ENSMUSG00000109713.1 ENSMUSG00000109713 ENSMUST00000211088 Pvrig protein_coding Interval_168579 chr9 83726828 83728875 + 0 NA Intergenic Intergenic 36376 ENSMUSG00000100155.1 ENSMUSG00000100155 ENSMUST00000189326 Gm2109 lincRNA Interval_121817 chr5 8455088 8455533 + 0 NA TTS (ENSMUSG00000054099.11) protein_coding-TTS (ENSMUSG00000054099.11) 32452 ENSMUSG00000054099.11 ENSMUSG00000054099 ENSMUST00000198119 Slc25a40 protein_coding Interval_52105 chr14 36461450 36463554 + 0 NA Intergenic Intergenic -149615 ENSMUSG00000088766.1 ENSMUSG00000088766 ENSMUST00000158141 Gm24394 snoRNA Interval_99971 chr2 166181126 166181404 + 0 NA Intergenic Intergenic -8432 ENSMUSG00000088926.1 ENSMUSG00000088926 ENSMUST00000158301 Gm22687 rRNA Interval_24915 chr11 41223418 41224417 + 0 NA Intergenic Intergenic 5080 ENSMUSG00000086475.1 ENSMUSG00000086475 ENSMUST00000133945 Platr13 lincRNA Interval_6311 chr1 105790518 105790833 + 0 NA intron (ENSMUSG00000026321.7, intron 1 of 3) protein_coding-intron (ENSMUSG00000026321.7, intron 1 of 9) 9925 ENSMUSG00000026321.7 ENSMUSG00000026321 ENSMUST00000187658 Tnfrsf11a protein_coding Interval_58854 chr15 39216980 39217712 + 0 NA intron (ENSMUSG00000037386.16, intron 1 of 25) protein_coding-intron (ENSMUSG00000037386.16, intron 1 of 26) 36835 ENSMUSG00000098021.2 ENSMUSG00000098021 ENSMUST00000182394 Gm9522 processed_pseudogene Interval_63369 chr15 100649344 100650197 + 0 NA promoter-TSS (ENSMUSG00000098527.1) miRNA-promoter-TSS (ENSMUSG00000098527.1) -541 ENSMUSG00000098527.1 ENSMUSG00000098527 ENSMUST00000183874 Mir6961 miRNA Interval_42564 chr13 15497322 15497524 + 0 NA intron (ENSMUSG00000021318.15, intron 2 of 9) protein_coding-intron (ENSMUSG00000021318.15, intron 2 of 14) -33687 ENSMUSG00000097806.3 ENSMUSG00000097806 ENSMUST00000193256 Gm6556 processed_transcript Interval_71724 chr17 25700946 25701831 + 0 NA TTS (ENSMUSG00000118136.1) lincRNA-TTS (ENSMUSG00000118136.1) 2534 ENSMUSG00000118136.1 ENSMUSG00000118136 ENSMUST00000235985 Gm50312 lincRNA Interval_140532 chr6 119341316 119341777 + 0 NA intron (ENSMUSG00000041460.16, intron 29 of 37) protein_coding-intron (ENSMUSG00000041460.16, intron 29 of 37) -12342 ENSMUSG00000055003.14 ENSMUSG00000055003 ENSMUST00000124192 Lrtm2 protein_coding Interval_57064 chr15 5243670 5244813 + 0 NA promoter-TSS (ENSMUSG00000039942.15) protein_coding-promoter-TSS (ENSMUSG00000039942.15) -1531 ENSMUSG00000039942.15 ENSMUSG00000039942 ENSMUST00000047379 Ptger4 protein_coding Interval_13503 chr10 18817243 18817695 + 0 NA intron (ENSMUSG00000110737.1, intron 2 of 2) antisense-intron (ENSMUSG00000111474.1, intron 3 of 4) 14461 ENSMUSG00000110737.1 ENSMUSG00000110737 ENSMUST00000215429 4930444F02Rik lincRNA Interval_2868 chr1 46964552 46965083 + 0 NA Intergenic Intergenic -67938 ENSMUSG00000100160.1 ENSMUSG00000100160 ENSMUST00000185210 Gm28527 processed_pseudogene Interval_5780 chr1 91765804 91766410 + 0 NA Intergenic Intergenic -35363 ENSMUSG00000007805.4 ENSMUSG00000007805 ENSMUST00000186075 Twist2 protein_coding Interval_24923 chr11 41407789 41408451 + 0 NA Intergenic Intergenic 30042 ENSMUSG00000081112.1 ENSMUSG00000081112 ENSMUST00000121214 Gm12140 processed_pseudogene Interval_56242 chr14 114790588 114791236 + 0 NA Intergenic Intergenic 30313 ENSMUSG00000103140.1 ENSMUSG00000103140 ENSMUST00000194590 Gm37495 TEC Interval_161530 chr8 120995417 120995919 + 0 NA intron (ENSMUSG00000092329.1, intron 1 of 15) protein_coding-intron (ENSMUSG00000092329.1, intron 1 of 15) -7259 ENSMUSG00000101886.1 ENSMUSG00000101886 ENSMUST00000187913 Gm28324 lincRNA Interval_48403 chr13 98826808 98827011 + 0 NA Intergenic Intergenic 10157 ENSMUSG00000114719.1 ENSMUSG00000114719 ENSMUST00000225468 Gm18134 processed_pseudogene Interval_46941 chr13 73603230 73604730 + 0 NA promoter-TSS (ENSMUSG00000021610.8) protein_coding-promoter-TSS (ENSMUSG00000021610.8) -12824 ENSMUSG00000021610.8 ENSMUSG00000021610 ENSMUST00000221130 Clptm1l protein_coding Interval_16394 chr10 62711282 62711509 + 0 NA intron (ENSMUSG00000036923.12, intron 1 of 3) protein_coding-intron (ENSMUSG00000036923.12, intron 2 of 3) 9199 ENSMUSG00000112378.1 ENSMUSG00000112378 ENSMUST00000220207 Gm47261 processed_pseudogene Interval_132478 chr5 145201452 145202016 + 0 NA exon (ENSMUSG00000029627.12, exon 1 of 3) protein_coding-exon (ENSMUSG00000029627.12, exon 1 of 3) 134 ENSMUSG00000029627.12 ENSMUSG00000029627 ENSMUST00000198959 Zkscan14 protein_coding Interval_82523 chr18 74919474 74920132 + 0 NA Intergenic Intergenic -9416 ENSMUSG00000117754.1 ENSMUSG00000117754 ENSMUST00000235192 Rpl37a-ps2 processed_pseudogene Interval_7340 chr1 129843411 129843862 + 0 NA intron (ENSMUSG00000042581.14, intron 12 of 27) protein_coding-intron (ENSMUSG00000042581.14, intron 12 of 15) 10488 ENSMUSG00000102800.1 ENSMUSG00000102800 ENSMUST00000194169 Gm37479 TEC Interval_119243 chr4 136417286 136417503 + 0 NA Intergenic Intergenic -7218 ENSMUSG00000070687.11 ENSMUSG00000070687 ENSMUST00000133818 Htr1d protein_coding Interval_20972 chr10 122908975 122909705 + 0 NA intron (ENSMUSG00000034613.12, intron 3 of 4) protein_coding-intron (ENSMUSG00000034613.12, intron 8 of 9) 13972 ENSMUSG00000034613.12 ENSMUSG00000034613 ENSMUST00000162969 Ppm1h protein_coding Interval_53052 chr14 53977272 53977490 + 0 NA exon (ENSMUSG00000106289.1, exon 2 of 2) TR_V_gene-exon (ENSMUSG00000106289.1, exon 2 of 2) 228 ENSMUSG00000106289.1 ENSMUSG00000106289 ENSMUST00000199137 Trav23 TR_V_gene Interval_137906 chr6 83279970 83280796 + 0 NA intron (ENSMUSG00000068323.12, intron 2 of 2) protein_coding-intron (ENSMUSG00000068323.12, intron 15 of 24) 2990 ENSMUSG00000068323.12 ENSMUSG00000068323 ENSMUST00000131432 Slc4a5 protein_coding Interval_131631 chr5 138947907 138948215 + 0 NA Intergenic Intergenic 46220 ENSMUSG00000025856.15 ENSMUSG00000025856 ENSMUST00000132051 Pdgfa protein_coding Interval_42795 chr13 19618996 19619976 + 0 NA exon (ENSMUSG00000002808.7, exon 1 of 3) protein_coding-exon (ENSMUSG00000002808.7, exon 1 of 3) 302 ENSMUSG00000002808.7 ENSMUSG00000002808 ENSMUST00000220755 Epdr1 protein_coding Interval_139377 chr6 99629878 99630393 + 0 NA intron (ENSMUSG00000093661.1, intron 6 of 6) protein_coding-intron (ENSMUSG00000093661.1, intron 6 of 6) 2241 ENSMUSG00000030068.4 ENSMUSG00000030068 ENSMUST00000176255 Gm20696 protein_coding Interval_54646 chr14 72725521 72726004 + 0 NA Intergenic Intergenic 12551 ENSMUSG00000115494.1 ENSMUSG00000115494 ENSMUST00000226943 Gm49293 lincRNA Interval_67908 chr16 59407120 59407322 + 0 NA promoter-TSS (ENSMUSG00000074991.5) protein_coding-promoter-TSS (ENSMUSG00000074991.5) -111 ENSMUSG00000074991.5 ENSMUSG00000074991 ENSMUST00000114341 Gabrr3 protein_coding Interval_68471 chr16 77475402 77475682 + 0 NA intron (ENSMUSG00000090386.10, intron 4 of 8) processed_transcript-intron (ENSMUSG00000090386.10, intron 2 of 4) -1392 ENSMUSG00000103805.1 ENSMUSG00000103805 ENSMUST00000194678 Gm37063 TEC Interval_61037 chr15 78901117 78901628 + 0 NA intron (ENSMUSG00000022436.16, intron 2 of 16) protein_coding-intron (ENSMUSG00000022436.16, intron 2 of 17) 1705 ENSMUSG00000116069.1 ENSMUSG00000116069 ENSMUST00000134703 Gm49510 protein_coding Interval_5356 chr1 87840282 87840848 + 0 NA intron (ENSMUSG00000056055.13, intron 13 of 15) protein_coding-intron (ENSMUSG00000056055.13, intron 13 of 15) 13734 ENSMUSG00000101942.1 ENSMUSG00000101942 ENSMUST00000187511 Gm19582 antisense Interval_90372 chr2 30052098 30052489 + 0 NA Intergenic Intergenic -3432 ENSMUSG00000039715.8 ENSMUSG00000039715 ENSMUST00000146275 Wdr34 protein_coding Interval_84378 chr19 10473695 10474994 + 0 NA intron (ENSMUSG00000035179.4, intron 13 of 13) protein_coding-intron (ENSMUSG00000035179.4, intron 13 of 13) 8584 ENSMUSG00000035179.4 ENSMUSG00000035179 ENSMUST00000236733 Ppp1r32 protein_coding Interval_66540 chr16 34984387 34985407 + 0 NA intron (ENSMUSG00000022836.11, intron 17 of 17) protein_coding-intron (ENSMUSG00000022836.11, intron 27 of 31) -26019 ENSMUSG00000116665.1 ENSMUSG00000116665 ENSMUST00000232399 E130310I04Rik antisense Interval_163226 chr9 18646423 18646624 + 0 NA exon (ENSMUSG00000109564.1, exon 4 of 78) protein_coding-exon (ENSMUSG00000109564.1, exon 4 of 78) 28007 ENSMUSG00000109564.1 ENSMUSG00000109564 ENSMUST00000207509 Muc16 protein_coding Interval_72810 chr17 32297657 32298450 + 0 NA intron (ENSMUSG00000097217.2, intron 1 of 1) bidirectional_promoter_lncRNA-intron (ENSMUSG00000097217.2, intron 1 of 1) 13264 ENSMUSG00000097217.2 ENSMUSG00000097217 ENSMUST00000181112 Gm26549 bidirectional_promoter_lncRNA Interval_78096 chr18 7931665 7932018 + 0 NA promoter-TSS (ENSMUSG00000091019.1) processed_pseudogene-promoter-TSS (ENSMUSG00000091019.1) -941 ENSMUSG00000091019.1 ENSMUSG00000091019 ENSMUST00000169235 Gm7502 processed_pseudogene Interval_22025 chr11 5846741 5847247 + 0 NA Intergenic Intergenic -10509 ENSMUSG00000020474.11 ENSMUSG00000020474 ENSMUST00000153987 Polm protein_coding Interval_158581 chr8 84616159 84618150 + 0 NA promoter-TSS (ENSMUSG00000086067.1) antisense-promoter-TSS (ENSMUSG00000086067.1) 30 ENSMUSG00000086067.1 ENSMUSG00000086067 ENSMUST00000127527 Gm16183 antisense Interval_145953 chr7 42605028 42605581 + 0 NA promoter-TSS (ENSMUSG00000076180.1) miRNA-promoter-TSS (ENSMUSG00000076180.1) -39 ENSMUSG00000076180.1 ENSMUSG00000076180 ENSMUST00000102225 Gm24938 miRNA Interval_59786 chr15 59263394 59263769 + 0 NA Intergenic Intergenic -11815 ENSMUSG00000115118.1 ENSMUSG00000115118 ENSMUST00000227185 Gm36617 lincRNA Interval_85673 chr19 29561076 29561374 + 0 NA intron (ENSMUSG00000038658.15, intron 2 of 23) protein_coding-intron (ENSMUSG00000038658.15, intron 3 of 25) 27989 ENSMUSG00000038658.15 ENSMUSG00000038658 ENSMUST00000161330 Ric1 protein_coding Interval_52623 chr14 48078676 48079643 + 0 NA TTS (ENSMUSG00000062081.6) processed_pseudogene-TTS (ENSMUSG00000062081.6) 593 ENSMUSG00000062081.6 ENSMUSG00000062081 ENSMUST00000180532 Gm6055 processed_pseudogene Interval_34684 chr12 8681004 8681472 + 0 NA intron (ENSMUSG00000020594.14, intron 2 of 4) protein_coding-intron (ENSMUSG00000020594.14, intron 1 of 19) 7104 ENSMUSG00000020594.14 ENSMUSG00000020594 ENSMUST00000171608 Pum2 protein_coding Interval_26377 chr11 57482033 57482511 + 0 NA TTS (ENSMUSG00000020523.14) protein_coding-TTS (ENSMUSG00000020523.14) 33165 ENSMUSG00000082476.1 ENSMUSG00000082476 ENSMUST00000118824 Gm12242 processed_pseudogene Interval_147343 chr7 66000948 66002000 + 0 NA intron (ENSMUSG00000030513.14, intron 11 of 19) protein_coding-intron (ENSMUSG00000030513.14, intron 13 of 21) -42128 ENSMUSG00000108793.1 ENSMUSG00000108793 ENSMUST00000206065 Gm45213 protein_coding Interval_155768 chr8 37105692 37106197 + 0 NA intron (ENSMUSG00000110337.1, intron 2 of 2) unprocessed_pseudogene-intron (ENSMUSG00000110337.1, intron 2 of 2) 2078 ENSMUSG00000110337.1 ENSMUSG00000110337 ENSMUST00000210149 Gm3433 unprocessed_pseudogene Interval_105853 chr3 89722614 89723217 + 0 NA intron (ENSMUSG00000027951.16, intron 1 of 1) protein_coding-intron (ENSMUSG00000027951.16, intron 1 of 14) 7893 ENSMUSG00000027951.16 ENSMUSG00000027951 ENSMUST00000131030 Adar protein_coding Interval_116877 chr4 117914174 117915942 + 0 NA promoter-TSS (ENSMUSG00000033365.14) protein_coding-promoter-TSS (ENSMUSG00000033365.14) 14355 ENSMUSG00000028539.14 ENSMUSG00000028539 ENSMUST00000150612 Artn protein_coding Interval_25890 chr11 52357234 52357482 + 0 NA Intergenic Intergenic -16742 ENSMUSG00000020402.11 ENSMUSG00000020402 ENSMUST00000153339 Vdac1 protein_coding Interval_26309 chr11 55998487 55998766 + 0 NA intron (ENSMUSG00000086020.1, intron 1 of 4) antisense-intron (ENSMUSG00000086020.1, intron 1 of 4) 42384 ENSMUSG00000037393.2 ENSMUSG00000037393 ENSMUST00000037682 Nmur2 protein_coding Interval_27400 chr11 67362035 67362725 + 0 NA intron (ENSMUSG00000060180.12, intron 31 of 40) protein_coding-intron (ENSMUSG00000060180.12, intron 29 of 38) -1710 ENSMUSG00000084567.1 ENSMUSG00000084567 ENSMUST00000122618 Gm26476 misc_RNA Interval_103528 chr3 47331013 47331458 + 0 NA Intergenic Intergenic -65435 ENSMUSG00000103491.1 ENSMUSG00000103491 ENSMUST00000194097 Gm10730 TEC Interval_12227 chr1 190956469 190956717 + 0 NA intron (ENSMUSG00000037568.12, intron 7 of 7) protein_coding-intron (ENSMUSG00000037568.12, intron 7 of 7) 19341 ENSMUSG00000026634.16 ENSMUSG00000026634 ENSMUST00000146048 Angel2 protein_coding Interval_100099 chr2 167066059 167067287 + 0 NA TTS (ENSMUSG00000074578.14) processed_transcript-TTS (ENSMUSG00000074578.14) 1397 ENSMUSG00000077698.1 ENSMUSG00000077698 ENSMUST00000104510 Snord12 snoRNA Interval_142980 chr6 147967862 147968108 + 0 NA Intergenic Intergenic 79354 ENSMUSG00000086777.3 ENSMUSG00000086777 ENSMUST00000149815 Far2os2 antisense Interval_173281 chrX 76174665 76175517 + 0 NA Intergenic Intergenic -12486 ENSMUSG00000084831.1 ENSMUSG00000084831 ENSMUST00000146082 Gm14710 unprocessed_pseudogene Interval_85792 chr19 31426085 31426619 + 0 NA intron (ENSMUSG00000052920.16, intron 2 of 17) protein_coding-intron (ENSMUSG00000052920.16, intron 2 of 17) 313806 ENSMUSG00000118011.1 ENSMUSG00000118011 ENSMUST00000235353 Gm50266 processed_pseudogene Interval_66370 chr16 33449168 33449598 + 0 NA intron (ENSMUSG00000022811.17, intron 4 of 7) protein_coding-intron (ENSMUSG00000022811.17, intron 4 of 8) 68520 ENSMUSG00000022811.17 ENSMUSG00000022811 ENSMUST00000089677 Zfp148 protein_coding Interval_82239 chr18 69521223 69522797 + 0 NA promoter-TSS (ENSMUSG00000053477.17) protein_coding-promoter-TSS (ENSMUSG00000053477.17) -440 ENSMUSG00000053477.17 ENSMUSG00000053477 ENSMUST00000136019 Tcf4 protein_coding Interval_158529 chr8 84276809 84277785 + 0 NA Intergenic Intergenic -10459 ENSMUSG00000004994.12 ENSMUSG00000004994 ENSMUST00000166728 Ccdc130 protein_coding Interval_129014 chr5 116731691 116732568 + 0 NA intron (ENSMUSG00000106909.1, intron 2 of 2) lincRNA-intron (ENSMUSG00000106909.1, intron 2 of 2) -79102 ENSMUSG00000107237.1 ENSMUSG00000107237 ENSMUST00000201443 Gm29926 lincRNA Interval_36569 chr12 50571530 50571779 + 0 NA intron (ENSMUSG00000002688.8, intron 1 of 18) protein_coding-intron (ENSMUSG00000002688.8, intron 1 of 18) 77444 ENSMUSG00000002688.8 ENSMUSG00000002688 ENSMUST00000002765 Prkd1 protein_coding Interval_591 chr1 8409895 8411231 + 0 NA intron (ENSMUSG00000025909.16, intron 20 of 20) protein_coding-intron (ENSMUSG00000025909.16, intron 6 of 6) 42928 ENSMUSG00000102647.1 ENSMUSG00000102647 ENSMUST00000192338 Gm38024 TEC Interval_46608 chr13 67552598 67553412 + 0 NA promoter-TSS (ENSMUSG00000097360.8) antisense-promoter-TSS (ENSMUSG00000097360.8) -197 ENSMUSG00000097360.8 ENSMUSG00000097360 ENSMUST00000180824 9430065F17Rik antisense Interval_151876 chr7 127253636 127254919 + 0 NA TTS (ENSMUSG00000054716.4) protein_coding-TTS (ENSMUSG00000054716.4) 6432 ENSMUSG00000042462.4 ENSMUSG00000042462 ENSMUST00000035276 Dctpp1 protein_coding Interval_45807 chr13 58199896 58200110 + 0 NA intron (ENSMUSG00000005312.15, intron 1 of 9) protein_coding-intron (ENSMUSG00000005312.15, intron 1 of 10) -8685 ENSMUSG00000114524.1 ENSMUSG00000114524 ENSMUST00000224851 Gm48357 sense_intronic Interval_77920 chr18 5534289 5534523 + 0 NA intron (ENSMUSG00000063087.15, intron 4 of 5) processed_transcript-intron (ENSMUSG00000063087.15, intron 3 of 3) 40649 ENSMUSG00000097926.1 ENSMUSG00000097926 ENSMUST00000181714 Gm26575 sense_intronic Interval_1783 chr1 33766944 33767286 + 0 NA intron (ENSMUSG00000042197.13, intron 11 of 12) protein_coding-intron (ENSMUSG00000042197.13, intron 13 of 14) -9388 ENSMUSG00000042215.8 ENSMUSG00000042215 ENSMUST00000189741 Bag2 protein_coding Interval_16177 chr10 61235773 61238536 + 0 NA intron (ENSMUSG00000059901.12, intron 4 of 21) protein_coding-intron (ENSMUSG00000059901.12, intron 4 of 21) 36088 ENSMUSG00000059901.12 ENSMUSG00000059901 ENSMUST00000120336 Adamts14 protein_coding Interval_5456 chr1 88995329 88996181 + 0 NA Intergenic Intergenic -20358 ENSMUSG00000099378.1 ENSMUSG00000099378 ENSMUST00000186180 1700067G17Rik lincRNA Interval_157608 chr8 71685123 71686942 + 0 NA exon (ENSMUSG00000031805.17, exon 21 of 25) protein_coding-exon (ENSMUSG00000031805.17, exon 21 of 25) -3182 ENSMUSG00000079019.2 ENSMUSG00000079019 ENSMUST00000034261 Insl3 protein_coding Interval_15638 chr10 52690169 52691790 + 0 NA exon (ENSMUSG00000038602.7, exon 1 of 8) protein_coding-exon (ENSMUSG00000038602.7, exon 1 of 8) 446 ENSMUSG00000038602.7 ENSMUSG00000038602 ENSMUST00000105473 Slc35f1 protein_coding Interval_60689 chr15 76179487 76181970 + 0 NA exon (ENSMUSG00000022565.15, exon 31 of 32) protein_coding-exon (ENSMUSG00000022565.15, exon 31 of 32) 25593 ENSMUSG00000022565.15 ENSMUSG00000022565 ENSMUST00000165135 Plec protein_coding Interval_87140 chr19 46414860 46415386 + 0 NA intron (ENSMUSG00000025231.17, intron 1 of 5) protein_coding-intron (ENSMUSG00000025231.17, intron 2 of 11) 13999 ENSMUSG00000025231.17 ENSMUSG00000025231 ENSMUST00000144341 Sufu protein_coding Interval_98858 chr2 155617129 155617441 + 0 NA intron (ENSMUSG00000074652.3, intron 7 of 41) protein_coding-intron (ENSMUSG00000074652.3, intron 7 of 41) -5595 ENSMUSG00000076312.1 ENSMUSG00000076312 ENSMUST00000102357 Mir499 miRNA Interval_116925 chr4 118254348 118254626 + 0 NA intron (ENSMUSG00000033295.14, intron 6 of 9) protein_coding-intron (ENSMUSG00000033295.14, intron 6 of 32) 36787 ENSMUSG00000033295.14 ENSMUSG00000033295 ENSMUST00000222620 Ptprf protein_coding Interval_6536 chr1 114960834 114961100 + 0 NA Intergenic Intergenic 258796 ENSMUSG00000101687.1 ENSMUSG00000101687 ENSMUST00000185902 Gm4854 processed_pseudogene Interval_64557 chr16 13303768 13303987 + 0 NA intron (ENSMUSG00000009569.14, intron 2 of 4) protein_coding-intron (ENSMUSG00000009569.14, intron 2 of 16) -54544 ENSMUSG00000009569.14 ENSMUSG00000009569 ENSMUST00000149359 Mrtfb protein_coding Interval_31968 chr11 104224442 104224756 + 0 NA Intergenic Intergenic -6980 ENSMUSG00000018411.17 ENSMUSG00000018411 ENSMUST00000126820 Mapt protein_coding Interval_73969 chr17 45762825 45762991 + 0 NA intron (ENSMUSG00000097727.8, intron 1 of 2) lincRNA-intron (ENSMUSG00000097727.8, intron 1 of 2) -4287 ENSMUSG00000097727.8 ENSMUSG00000097727 ENSMUST00000233473 F630040K05Rik lincRNA Interval_36437 chr12 44580100 44581212 + 0 NA intron (ENSMUSG00000020598.16, intron 26 of 30) protein_coding-intron (ENSMUSG00000020598.16, intron 26 of 30) 42006 ENSMUSG00000112823.1 ENSMUSG00000112823 ENSMUST00000217983 Gm6125 processed_pseudogene Interval_77628 chr17 93321634 93322151 + 0 NA Intergenic Intergenic -4631 ENSMUSG00000117362.1 ENSMUSG00000117362 ENSMUST00000234454 Gm9665 processed_pseudogene Interval_60037 chr15 64139937 64140332 + 0 NA intron (ENSMUSG00000022377.16, intron 14 of 30) protein_coding-intron (ENSMUSG00000022377.16, intron 14 of 30) -16328 ENSMUSG00000022377.16 ENSMUSG00000022377 ENSMUST00000175963 Asap1 protein_coding Interval_164514 chr9 37621397 37621827 + 0 NA promoter-TSS (ENSMUSG00000001942.8) protein_coding-promoter-TSS (ENSMUSG00000001942.8) 7785 ENSMUSG00000001942.8 ENSMUSG00000001942 ENSMUST00000213964 Siae protein_coding Interval_80707 chr18 46499397 46499891 + 0 NA Intergenic Intergenic 2559 ENSMUSG00000118116.1 ENSMUSG00000118116 ENSMUST00000235462 Gm3720 processed_pseudogene Interval_11259 chr1 180547221 180549186 + 0 NA Intergenic Intergenic -28476 ENSMUSG00000102608.1 ENSMUSG00000102608 ENSMUST00000194222 Gm37267 lincRNA Interval_30393 chr11 94086846 94087436 + 0 NA intron (ENSMUSG00000020859.16, intron 10 of 17) protein_coding-intron (ENSMUSG00000020859.16, intron 10 of 26) 43571 ENSMUSG00000020859.16 ENSMUSG00000020859 ENSMUST00000153076 Spag9 protein_coding Interval_107200 chr3 104555184 104555427 + 0 NA Intergenic Intergenic -43992 ENSMUSG00000105659.1 ENSMUSG00000105659 ENSMUST00000196088 4930509H03Rik sense_intronic Interval_174552 chrX 157594818 157595379 + 0 NA intron (ENSMUSG00000046873.18, intron 1 of 5) protein_coding-intron (ENSMUSG00000046873.18, intron 1 of 10) 3552 ENSMUSG00000046873.18 ENSMUSG00000046873 ENSMUST00000152826 Mbtps2 protein_coding Interval_31045 chr11 97846604 97847261 + 0 NA Intergenic Intergenic 5613 ENSMUSG00000050538.8 ENSMUSG00000050538 ENSMUST00000170806 B230217C12Rik protein_coding Interval_153971 chr8 11568553 11568994 + 0 NA Intergenic Intergenic 13202 ENSMUSG00000045969.8 ENSMUSG00000045969 ENSMUST00000209565 Ing1 protein_coding Interval_121491 chr4 156163589 156163793 + 0 NA Intergenic Intergenic 22416 ENSMUSG00000041936.18 ENSMUSG00000041936 ENSMUST00000144749 Agrn protein_coding Interval_147270 chr7 65319057 65320321 + 0 NA intron (ENSMUSG00000030516.14, intron 15 of 27) protein_coding-intron (ENSMUSG00000030516.14, intron 15 of 26) 47093 ENSMUSG00000108338.1 ENSMUSG00000108338 ENSMUST00000206550 Gm44794 TEC Interval_118242 chr4 129754733 129755120 + 0 NA Intergenic Intergenic 6990 ENSMUSG00000080944.1 ENSMUSG00000080944 ENSMUST00000122147 Gm12967 processed_pseudogene Interval_102064 chr3 16373157 16373501 + 0 NA Intergenic Intergenic 190093 ENSMUSG00000047213.14 ENSMUSG00000047213 ENSMUST00000108346 Ythdf3 protein_coding Interval_38462 chr12 79201964 79202165 + 0 NA Intergenic Intergenic -6883 ENSMUSG00000021123.12 ENSMUSG00000021123 ENSMUST00000140823 Rdh12 protein_coding Interval_103110 chr3 35458404 35458954 + 0 NA Intergenic Intergenic 44846 ENSMUSG00000106512.1 ENSMUSG00000106512 ENSMUST00000197222 Gm43078 TEC Interval_170831 chr9 111030474 111031557 + 0 NA promoter-TSS (ENSMUSG00000032496.7) protein_coding-promoter-TSS (ENSMUSG00000032496.7) 6629 ENSMUSG00000032496.7 ENSMUSG00000032496 ENSMUST00000197575 Ltf protein_coding Interval_129498 chr5 120578114 120578538 + 0 NA intron (ENSMUSG00000032741.9, intron 2 of 14) protein_coding-intron (ENSMUSG00000032741.9, intron 2 of 27) 10268 ENSMUSG00000032741.9 ENSMUSG00000032741 ENSMUST00000201601 Tpcn1 protein_coding Interval_116961 chr4 118472363 118472922 + 0 NA exon (ENSMUSG00000033191.14, exon 22 of 23) protein_coding-exon (ENSMUSG00000033191.14, exon 22 of 23) -15147 ENSMUSG00000006389.13 ENSMUSG00000006389 ENSMUST00000216417 Mpl protein_coding Interval_6153 chr1 98119784 98120055 + 0 NA Intergenic Intergenic -11537 ENSMUSG00000100182.6 ENSMUSG00000100182 ENSMUST00000186473 1810006J02Rik lincRNA Interval_141556 chr6 129234660 129234911 + 0 NA promoter-TSS (ENSMUSG00000097354.7) lincRNA-promoter-TSS (ENSMUSG00000097354.7) 3206 ENSMUSG00000097354.7 ENSMUSG00000097354 ENSMUST00000204328 2310001H17Rik lincRNA Interval_172867 chrX 52370101 52370591 + 0 NA intron (ENSMUSG00000055653.13, intron 5 of 7) protein_coding-intron (ENSMUSG00000055653.13, intron 5 of 7) 7835 ENSMUSG00000105738.1 ENSMUSG00000105738 ENSMUST00000196833 Mir6384 miRNA Interval_169410 chr9 97047744 97048072 + 0 NA intron (ENSMUSG00000101365.1, intron 2 of 2) lincRNA-intron (ENSMUSG00000101365.1, intron 2 of 2) -5046 ENSMUSG00000101376.1 ENSMUSG00000101376 ENSMUST00000190791 Gm18291 processed_pseudogene Interval_31917 chr11 103840461 103841433 + 0 NA intron (ENSMUSG00000034187.18, intron 17 of 20) protein_coding-intron (ENSMUSG00000034187.18, intron 17 of 20) 31375 ENSMUSG00000034187.18 ENSMUSG00000034187 ENSMUST00000149642 Nsf protein_coding Interval_2064 chr1 36212532 36212771 + 0 NA intron (ENSMUSG00000037470.14, intron 6 of 18) protein_coding-intron (ENSMUSG00000037470.14, intron 6 of 40) 32069 ENSMUSG00000037470.14 ENSMUSG00000037470 ENSMUST00000192159 Uggt1 protein_coding Interval_25997 chr11 53400193 53401478 + 0 NA intron (ENSMUSG00000049470.13, intron 11 of 20) protein_coding-intron (ENSMUSG00000049470.13, intron 11 of 20) -3712 ENSMUSG00000049470.13 ENSMUSG00000049470 ENSMUST00000129019 Aff4 protein_coding Interval_13855 chr10 23942239 23942778 + 0 NA TTS (ENSMUSG00000059763.4) protein_coding-TTS (ENSMUSG00000059763.4) 3936 ENSMUSG00000059763.4 ENSMUSG00000059763 ENSMUST00000079134 Taar2 protein_coding Interval_34706 chr12 8844003 8844357 + 0 NA Intergenic Intergenic 33202 ENSMUSG00000042976.6 ENSMUSG00000042976 ENSMUST00000218928 9930038B18Rik lincRNA Interval_89047 chr2 15013874 15014483 + 0 NA intron (ENSMUSG00000026707.15, intron 8 of 11) protein_coding-intron (ENSMUSG00000026707.15, intron 7 of 10) 19998 ENSMUSG00000103778.1 ENSMUSG00000103778 ENSMUST00000195431 Gm36930 TEC Interval_150812 chr7 114882898 114883436 + 0 NA Intergenic Intergenic -28596 ENSMUSG00000108683.1 ENSMUSG00000108683 ENSMUST00000206842 Gm45017 lincRNA Interval_95834 chr2 117063266 117063548 + 0 NA Intergenic Intergenic 7841 ENSMUSG00000074930.5 ENSMUSG00000074930 ENSMUST00000122360 Gm13981 processed_pseudogene Interval_71522 chr17 24281996 24283286 + 0 NA intron (ENSMUSG00000035435.17, intron 23 of 30) protein_coding-intron (ENSMUSG00000035435.17, intron 22 of 29) -22028 ENSMUSG00000094175.1 ENSMUSG00000094175 ENSMUST00000116896 Gm24427 miRNA Interval_146483 chr7 46267959 46268354 + 0 NA intron (ENSMUSG00000009487.10, intron 23 of 55) protein_coding-intron (ENSMUSG00000009487.10, intron 23 of 55) 27153 ENSMUSG00000009487.10 ENSMUSG00000009487 ENSMUST00000209802 Otog protein_coding Interval_145056 chr7 29790696 29790943 + 0 NA exon (ENSMUSG00000047473.14, exon 4 of 4) protein_coding-exon (ENSMUSG00000047473.14, exon 4 of 4) 6796 ENSMUSG00000047473.14 ENSMUSG00000047473 ENSMUST00000122387 Zfp30 protein_coding Interval_77641 chr17 93498376 93499199 + 0 NA Intergenic Intergenic -107089 ENSMUSG00000117368.1 ENSMUSG00000117368 ENSMUST00000234726 Gm50001 processed_pseudogene Interval_89635 chr2 23621889 23622401 + 0 NA Intergenic Intergenic -58073 ENSMUSG00000083729.1 ENSMUSG00000083729 ENSMUST00000121498 Sh3d2c-ps1 processed_pseudogene Interval_45844 chr13 58514297 58514715 + 0 NA Intergenic Intergenic -31522 ENSMUSG00000114234.1 ENSMUSG00000114234 ENSMUST00000223882 Gm3131 processed_pseudogene Interval_12306 chr1 191554123 191554797 + 0 NA intron (ENSMUSG00000037474.13, intron 10 of 14) protein_coding-intron (ENSMUSG00000037474.13, intron 10 of 14) -17568 ENSMUSG00000102246.1 ENSMUSG00000102246 ENSMUST00000192556 9430037O13Rik TEC Interval_164829 chr9 42314302 42315888 + 0 NA Intergenic Intergenic 2586 ENSMUSG00000096114.1 ENSMUSG00000096114 ENSMUST00000179241 Gm26272 snoRNA Interval_36742 chr12 52863339 52863954 + 0 NA intron (ENSMUSG00000061603.8, intron 1 of 11) protein_coding-intron (ENSMUSG00000061603.8, intron 2 of 13) 67810 ENSMUSG00000061603.8 ENSMUSG00000061603 ENSMUST00000219786 Akap6 protein_coding Interval_156821 chr8 60850309 60851549 + 0 NA Intergenic Intergenic 4617 ENSMUSG00000110261.1 ENSMUSG00000110261 ENSMUST00000211229 Gm45485 processed_pseudogene Interval_43482 chr13 31774507 31775086 + 0 NA Intergenic Intergenic -22743 ENSMUSG00000086144.2 ENSMUSG00000086144 ENSMUST00000154678 Gm11379 antisense Interval_7737 chr1 133352010 133352399 + 0 NA intron (ENSMUSG00000070645.5, intron 1 of 1) protein_coding-intron (ENSMUSG00000070645.5, intron 1 of 8) 295 ENSMUSG00000070645.5 ENSMUSG00000070645 ENSMUST00000112287 Ren1 protein_coding Interval_155564 chr8 34577895 34578806 + 0 NA Intergenic Intergenic -29955 ENSMUSG00000109880.1 ENSMUSG00000109880 ENSMUST00000211296 Gm34096 lincRNA Interval_151461 chr7 122762167 122762374 + 0 NA exon (ENSMUSG00000066189.9, exon 3 of 4) protein_coding-exon (ENSMUSG00000066189.9, exon 3 of 4) -60352 ENSMUSG00000108718.1 ENSMUSG00000108718 ENSMUST00000206285 Gm44749 TEC Interval_58275 chr15 31563517 31564123 + 0 NA Intergenic Intergenic -1569 ENSMUSG00000022235.15 ENSMUSG00000022235 ENSMUST00000161088 Cmbl protein_coding Interval_102541 chr3 27607046 27607872 + 0 NA intron (ENSMUSG00000039286.12, intron 4 of 26) protein_coding-intron (ENSMUSG00000039286.12, intron 3 of 25) -22464 ENSMUSG00000092695.1 ENSMUSG00000092695 ENSMUST00000174954 Mir3092 miRNA Interval_102915 chr3 32752523 32752753 + 0 NA Intergenic Intergenic -15033 ENSMUSG00000037531.8 ENSMUSG00000037531 ENSMUST00000192021 Mrpl47 protein_coding Interval_43796 chr13 36561852 36563308 + 0 NA intron (ENSMUSG00000021420.13, intron 6 of 7) protein_coding-intron (ENSMUSG00000021420.13, intron 6 of 7) -3515 ENSMUSG00000114581.1 ENSMUSG00000114581 ENSMUST00000223824 Gm8277 processed_pseudogene Interval_67925 chr16 59587993 59589084 + 0 NA intron (ENSMUSG00000022723.16, intron 1 of 21) protein_coding-intron (ENSMUSG00000022723.16, intron 1 of 21) 50591 ENSMUSG00000022722.18 ENSMUSG00000022722 ENSMUST00000149797 Arl6 protein_coding Interval_32223 chr11 106300743 106301123 + 0 NA intron (ENSMUSG00000020713.6, intron 3 of 4) protein_coding-intron (ENSMUSG00000020713.6, intron 3 of 4) 932 ENSMUSG00000020713.6 ENSMUSG00000020713 ENSMUST00000103071 Gh protein_coding Interval_56054 chr14 105173890 105174195 + 0 NA intron (ENSMUSG00000022119.15, intron 1 of 21) protein_coding-intron (ENSMUSG00000022119.15, intron 1 of 21) 10343 ENSMUSG00000115831.1 ENSMUSG00000115831 ENSMUST00000226837 Gm48937 processed_pseudogene Interval_153132 chr7 141551550 141552036 + 0 NA Intergenic Intergenic -10415 ENSMUSG00000002957.11 ENSMUSG00000002957 ENSMUST00000201261 Ap2a2 protein_coding Interval_155804 chr8 38874841 38875542 + 0 NA Intergenic Intergenic 107844 ENSMUSG00000077445.1 ENSMUSG00000077445 ENSMUST00000104257 Gm23128 snoRNA Interval_31241 chr11 99089169 99089574 + 0 NA promoter-TSS (ENSMUSG00000017607.9) protein_coding-promoter-TSS (ENSMUSG00000017607.9) -14030 ENSMUSG00000017607.9 ENSMUSG00000017607 ENSMUST00000123303 Tns4 protein_coding Interval_70935 chr17 16320581 16320831 + 0 NA exon (ENSMUSG00000116614.1, exon 2 of 2) processed_pseudogene-exon (ENSMUSG00000116614.1, exon 2 of 2) 394 ENSMUSG00000116614.1 ENSMUSG00000116614 ENSMUST00000231650 Gm46610 processed_pseudogene Interval_9919 chr1 164112758 164113085 + 0 NA Intergenic Intergenic -2343 ENSMUSG00000026580.16 ENSMUSG00000026580 ENSMUST00000162102 Selp protein_coding Interval_167213 chr9 66239788 66240080 + 0 NA intron (ENSMUSG00000032380.9, intron 4 of 9) protein_coding-intron (ENSMUSG00000032380.9, intron 4 of 11) 81708 ENSMUSG00000032380.9 ENSMUSG00000032380 ENSMUST00000129778 Dapk2 protein_coding Interval_48413 chr13 98875363 98875590 + 0 NA TTS (ENSMUSG00000009470.17) protein_coding-TTS (ENSMUSG00000009470.17) -5153 ENSMUSG00000009470.17 ENSMUSG00000009470 ENSMUST00000179271 Tnpo1 protein_coding Interval_73823 chr17 44159732 44160682 + 0 NA intron (ENSMUSG00000023959.10, intron 1 of 5) protein_coding-intron (ENSMUSG00000023959.10, intron 1 of 5) 25439 ENSMUSG00000023959.10 ENSMUSG00000023959 ENSMUST00000233193 Clic5 protein_coding Interval_117320 chr4 122985100 122985495 + 0 NA Intergenic Intergenic -14042 ENSMUSG00000028654.13 ENSMUSG00000028654 ENSMUST00000147259 Mycl protein_coding Interval_20752 chr10 120745040 120745788 + 0 NA TTS (ENSMUSG00000112757.1) TEC-TTS (ENSMUSG00000112757.1) 2919 ENSMUSG00000112757.1 ENSMUSG00000112757 ENSMUST00000219611 Gm10743 TEC Interval_44363 chr13 44218486 44218915 + 0 NA Intergenic Intergenic -2213 ENSMUSG00000113186.1 ENSMUSG00000113186 ENSMUST00000223513 A330076C08Rik lincRNA Interval_116950 chr4 118390316 118390533 + 0 NA promoter-TSS (ENSMUSG00000033253.18) protein_coding-promoter-TSS (ENSMUSG00000033253.18) -16150 ENSMUSG00000033253.18 ENSMUSG00000033253 ENSMUST00000136737 Szt2 protein_coding Interval_167839 chr9 73005177 73006451 + 0 NA TTS (ENSMUSG00000098589.2) miRNA-TTS (ENSMUSG00000098589.2) 613 ENSMUSG00000098589.2 ENSMUSG00000098589 ENSMUST00000184712 Gm27353 miRNA Interval_81995 chr18 66994524 66995237 + 0 NA Intergenic Intergenic 20715 ENSMUSG00000117798.1 ENSMUSG00000117798 ENSMUST00000237275 Gm50164 lincRNA Interval_142855 chr6 146469322 146469712 + 0 NA intron (ENSMUSG00000030287.15, intron 1 of 18) protein_coding-intron (ENSMUSG00000030287.15, intron 2 of 56) -5910 ENSMUSG00000082120.1 ENSMUSG00000082120 ENSMUST00000117133 Gm15720 processed_pseudogene Interval_9982 chr1 164531602 164532241 + 0 NA Intergenic Intergenic 28612 ENSMUSG00000097281.2 ENSMUSG00000097281 ENSMUST00000181831 Gm26685 lincRNA Interval_77719 chr17 94650949 94652636 + 0 NA Intergenic Intergenic -8605 ENSMUSG00000117382.1 ENSMUSG00000117382 ENSMUST00000234855 Gm50005 processed_pseudogene Interval_146090 chr7 43811217 43811405 + 0 NA promoter-TSS (ENSMUSG00000030713.6) protein_coding-promoter-TSS (ENSMUSG00000030713.6) 17 ENSMUSG00000030713.6 ENSMUSG00000030713 ENSMUST00000032955 Klk7 protein_coding Interval_136180 chr6 51808095 51808770 + 0 NA Intergenic Intergenic 63497 ENSMUSG00000059182.7 ENSMUSG00000059182 ENSMUST00000203313 Skap2 protein_coding Interval_153526 chr8 3150531 3150761 + 0 NA TTS (ENSMUSG00000005534.10) protein_coding-TTS (ENSMUSG00000005534.10) 8909 ENSMUSG00000005534.10 ENSMUSG00000005534 ENSMUST00000139504 Insr protein_coding Interval_154312 chr8 14331262 14331525 + 0 NA intron (ENSMUSG00000047495.15, intron 2 of 14) protein_coding-intron (ENSMUSG00000047495.15, intron 2 of 14) -18785 ENSMUSG00000106670.1 ENSMUSG00000106670 ENSMUST00000199602 Gm44347 miRNA Interval_135510 chr6 39780663 39781780 + 0 NA Intergenic Intergenic 24821 ENSMUSG00000029918.9 ENSMUSG00000029918 ENSMUST00000139992 Mrps33 protein_coding Interval_151576 chr7 124031730 124032987 + 0 NA intron (ENSMUSG00000078591.1, intron 1 of 1) protein_coding-intron (ENSMUSG00000078591.1, intron 1 of 1) -48904 ENSMUSG00000098129.1 ENSMUSG00000098129 ENSMUST00000181984 Gm27040 antisense Interval_158523 chr8 84230665 84231917 + 0 NA intron (ENSMUSG00000035671.6, intron 2 of 13) protein_coding-intron (ENSMUSG00000035671.6, intron 2 of 13) 5764 ENSMUSG00000035671.6 ENSMUSG00000035671 ENSMUST00000039480 Zswim4 protein_coding Interval_155595 chr8 34964738 34966134 + 0 NA promoter-TSS (ENSMUSG00000054247.6) bidirectional_promoter_lncRNA-promoter-TSS (ENSMUSG00000054247.6) -997 ENSMUSG00000054247.6 ENSMUSG00000054247 ENSMUST00000210951 Gm9939 bidirectional_promoter_lncRNA Interval_49227 chr13 109651574 109652319 + 0 NA intron (ENSMUSG00000021699.17, intron 1 of 14) protein_coding-intron (ENSMUSG00000021699.17, intron 1 of 14) -251863 ENSMUSG00000084651.1 ENSMUSG00000084651 ENSMUST00000122702 Mir1904 miRNA Interval_117782 chr4 126194843 126195212 + 0 NA promoter-TSS (ENSMUSG00000043962.16) protein_coding-promoter-TSS (ENSMUSG00000043962.16) 6250 ENSMUSG00000084504.1 ENSMUSG00000084504 ENSMUST00000122555 Gm25323 snRNA Interval_143338 chr7 5859423 5860897 + 0 NA Intergenic Intergenic 24382 ENSMUSG00000118388.1 ENSMUSG00000118388 ENSMUST00000078475 Vmn1r64 protein_coding Interval_28972 chr11 79656385 79656759 + 0 NA intron (ENSMUSG00000017639.13, intron 3 of 14) protein_coding-intron (ENSMUSG00000017639.13, intron 3 of 14) -3990 ENSMUSG00000017639.13 ENSMUSG00000017639 ENSMUST00000155381 Rab11fip4 protein_coding Interval_100810 chr2 172647360 172647916 + 0 NA Intergenic Intergenic 96647 ENSMUSG00000028640.11 ENSMUSG00000028640 ENSMUST00000142633 Tfap2c protein_coding Interval_128845 chr5 115559035 115559954 + 0 NA promoter-TSS (ENSMUSG00000067274.10) protein_coding-promoter-TSS (ENSMUSG00000067274.10) -43 ENSMUSG00000067274.10 ENSMUSG00000067274 ENSMUST00000155584 Rplp0 protein_coding Interval_489 chr1 6350995 6351486 + 0 NA Intergenic Intergenic -7978 ENSMUSG00000087247.3 ENSMUSG00000087247 ENSMUST00000133144 Alkal1 protein_coding Interval_68874 chr16 87735574 87736595 + 0 NA Intergenic Intergenic 25559 ENSMUSG00000088684.1 ENSMUSG00000088684 ENSMUST00000158059 Gm23994 snoRNA Interval_132941 chr5 148862196 148862716 + 0 NA Intergenic Intergenic 41689 ENSMUSG00000087647.2 ENSMUSG00000087647 ENSMUST00000136919 Gm15407 lincRNA Interval_158661 chr8 85009189 85009594 + 0 NA intron (ENSMUSG00000052819.6, intron 8 of 9) protein_coding-intron (ENSMUSG00000052819.6, intron 8 of 9) 5140 ENSMUSG00000052819.6 ENSMUSG00000052819 ENSMUST00000209421 Best2 protein_coding Interval_79452 chr18 32032462 32033071 + 0 NA intron (ENSMUSG00000024388.11, intron 1 of 46) protein_coding-intron (ENSMUSG00000024388.11, intron 1 of 46) 1677 ENSMUSG00000085300.1 ENSMUSG00000085300 ENSMUST00000146065 Gm16345 processed_pseudogene Interval_165312 chr9 46194957 46195200 + 0 NA intron (ENSMUSG00000034135.15, intron 8 of 22) protein_coding-intron (ENSMUSG00000034135.15, intron 8 of 22) -33643 ENSMUSG00000032083.8 ENSMUSG00000032083 ENSMUST00000132155 Apoa1 protein_coding Interval_75182 chr17 64455081 64455457 + 0 NA Intergenic Intergenic 14463 ENSMUSG00000098984.1 ENSMUSG00000098984 ENSMUST00000185032 Mir6420 miRNA Interval_91374 chr2 38356369 38357756 + 0 NA intron (ENSMUSG00000000247.11, intron 1 of 1) protein_coding-intron (ENSMUSG00000000247.11, intron 3 of 4) 5294 ENSMUSG00000000247.11 ENSMUSG00000000247 ENSMUST00000175896 Lhx2 protein_coding Interval_158972 chr8 88323294 88323584 + 0 NA intron (ENSMUSG00000031659.13, intron 12 of 18) protein_coding-intron (ENSMUSG00000031659.13, intron 20 of 27) 19395 ENSMUSG00000031660.13 ENSMUSG00000031660 ENSMUST00000135471 Brd7 protein_coding Interval_97658 chr2 142334702 142335029 + 0 NA intron (ENSMUSG00000068205.14, intron 11 of 13) protein_coding-intron (ENSMUSG00000068205.14, intron 16 of 17) -47123 ENSMUSG00000089318.1 ENSMUSG00000089318 ENSMUST00000158693 Gm23179 misc_RNA Interval_55002 chr14 76798481 76798716 + 0 NA Intergenic Intergenic 17771 ENSMUSG00000115817.1 ENSMUSG00000115817 ENSMUST00000226490 Gm30246 lincRNA Interval_77072 chr17 86214273 86216307 + 0 NA intron (ENSMUSG00000045038.14, intron 1 of 14) protein_coding-intron (ENSMUSG00000045038.14, intron 2 of 15) 39715 ENSMUSG00000117546.1 ENSMUSG00000117546 ENSMUST00000234087 AC154542.1 TEC Interval_127821 chr5 108035499 108036269 + 0 NA Intergenic Intergenic 20032 ENSMUSG00000096920.1 ENSMUSG00000096920 ENSMUST00000180714 Rps19-ps8 processed_pseudogene Interval_120990 chr4 152086190 152088689 + 0 NA intron (ENSMUSG00000039713.17, intron 1 of 21) protein_coding-intron (ENSMUSG00000039713.17, intron 1 of 21) 11153 ENSMUSG00000039713.17 ENSMUSG00000039713 ENSMUST00000142412 Plekhg5 protein_coding Interval_117072 chr4 119365431 119367140 + 0 NA intron (ENSMUSG00000028637.16, intron 1 of 4) protein_coding-intron (ENSMUSG00000028637.16, intron 3 of 6) 7468 ENSMUSG00000028637.16 ENSMUSG00000028637 ENSMUST00000238559 Ccdc30 protein_coding Interval_120449 chr4 148680063 148681962 + 0 NA Intergenic Intergenic -32691 ENSMUSG00000087273.1 ENSMUSG00000087273 ENSMUST00000139895 Gm13203 lincRNA Interval_91081 chr2 34878798 34879084 + 0 NA intron (ENSMUSG00000026870.19, intron 1 of 6) protein_coding-intron (ENSMUSG00000026870.19, intron 1 of 4) 4465 ENSMUSG00000026870.19 ENSMUSG00000026870 ENSMUST00000028228 Cutal protein_coding Interval_98421 chr2 152241467 152242535 + 0 NA intron (ENSMUSG00000074698.10, intron 1 of 3) protein_coding-intron (ENSMUSG00000074698.10, intron 1 of 12) 15088 ENSMUSG00000074698.10 ENSMUSG00000074698 ENSMUST00000141597 Csnk2a1 protein_coding Interval_18524 chr10 86933538 86934335 + 0 NA intron (ENSMUSG00000035459.18, intron 3 of 10) protein_coding-intron (ENSMUSG00000035459.18, intron 24 of 68) 24457 ENSMUSG00000089775.1 ENSMUSG00000089775 ENSMUST00000160327 Gm16270 transcribed_processed_pseudogene Interval_53757 chr14 61545985 61546177 + 0 NA intron (ENSMUSG00000021930.14, intron 2 of 3) protein_coding-intron (ENSMUSG00000021930.14, intron 2 of 4) 2354 ENSMUSG00000115802.1 ENSMUSG00000115802 ENSMUST00000226286 Vmn1r-ps136 unprocessed_pseudogene Interval_111366 chr4 19750034 19751045 + 0 NA Intergenic Intergenic -30340 ENSMUSG00000086071.7 ENSMUSG00000086071 ENSMUST00000131133 Gm12354 lincRNA Interval_152167 chr7 130324478 130326226 + 0 NA intron (ENSMUSG00000030849.18, intron 2 of 6) protein_coding-intron (ENSMUSG00000030849.18, intron 2 of 6) 29010 ENSMUSG00000082988.3 ENSMUSG00000082988 ENSMUST00000121836 Gm5903 processed_pseudogene Interval_83369 chr18 84647678 84647920 + 0 NA promoter-TSS (ENSMUSG00000056162.14) protein_coding-promoter-TSS (ENSMUSG00000056162.14) 2282 ENSMUSG00000056162.14 ENSMUSG00000056162 ENSMUST00000236714 Cndp1 protein_coding Interval_107527 chr3 108314183 108314523 + 0 NA intron (ENSMUSG00000068747.14, intron 3 of 20) protein_coding-intron (ENSMUSG00000068747.14, intron 3 of 19) 26472 ENSMUSG00000105358.1 ENSMUSG00000105358 ENSMUST00000198943 Gm43099 TEC Interval_171864 chr9 121847638 121848045 + 0 NA promoter-TSS (ENSMUSG00000111341.1) TEC-promoter-TSS (ENSMUSG00000111341.1) -904 ENSMUSG00000111341.1 ENSMUSG00000111341 ENSMUST00000217162 Gm47111 TEC Interval_134977 chr6 34268363 34268620 + 0 NA Intergenic Intergenic -21774 ENSMUSG00000086762.1 ENSMUSG00000086762 ENSMUST00000138275 Gm14546 antisense Interval_33498 chr11 116893523 116895381 + 0 NA Intergenic Intergenic 40374 ENSMUSG00000020818.16 ENSMUSG00000020818 ENSMUST00000134106 Mfsd11 protein_coding Interval_91281 chr2 37369204 37369503 + 0 NA TTS (ENSMUSG00000075376.10) protein_coding-TTS (ENSMUSG00000075376.10) -10157 ENSMUSG00000009030.14 ENSMUSG00000009030 ENSMUST00000147703 Pdcl protein_coding Interval_762 chr1 10778009 10778300 + 0 NA Intergenic Intergenic 6223 ENSMUSG00000103448.1 ENSMUSG00000103448 ENSMUST00000192705 Gm37133 TEC Interval_115174 chr4 93334477 93335963 + 0 NA exon (ENSMUSG00000054000.5, exon 1 of 1) protein_coding-exon (ENSMUSG00000054000.5, exon 1 of 1) 291 ENSMUSG00000054000.5 ENSMUSG00000054000 ENSMUST00000066774 Tusc1 protein_coding Interval_87221 chr19 47006303 47007075 + 0 NA intron (ENSMUSG00000025041.17, intron 1 of 17) protein_coding-intron (ENSMUSG00000025041.17, intron 1 of 17) -8009 ENSMUSG00000034336.3 ENSMUSG00000034336 ENSMUST00000037636 Ina protein_coding Interval_42449 chr13 13654425 13654632 + 0 NA intron (ENSMUSG00000019726.12, intron 14 of 52) protein_coding-intron (ENSMUSG00000019726.12, intron 14 of 52) -29563 ENSMUSG00000019726.12 ENSMUSG00000019726 ENSMUST00000221587 Lyst protein_coding Interval_59665 chr15 57737663 57738263 + 0 NA exon (ENSMUSG00000047807.10, exon 1 of 1) antisense-exon (ENSMUSG00000047807.10, exon 1 of 1) 703 ENSMUSG00000047807.10 ENSMUSG00000047807 ENSMUST00000176703 9330154K18Rik antisense Interval_47203 chr13 77982336 77982977 + 0 NA intron (ENSMUSG00000064138.14, intron 8 of 10) protein_coding-intron (ENSMUSG00000064138.14, intron 7 of 9) -42246 ENSMUSG00000093668.3 ENSMUSG00000093668 ENSMUST00000175955 Pou5f2 protein_coding Interval_66099 chr16 31592031 31592808 + 0 NA intron (ENSMUSG00000116793.1, intron 2 of 2) lincRNA-intron (ENSMUSG00000116793.1, intron 2 of 2) 801 ENSMUSG00000116793.1 ENSMUSG00000116793 ENSMUST00000232216 Gm34256 lincRNA Interval_30307 chr11 93395112 93395333 + 0 NA intron (ENSMUSG00000056158.14, intron 4 of 9) protein_coding-intron (ENSMUSG00000056158.14, intron 4 of 9) 18102 ENSMUSG00000064743.1 ENSMUSG00000064743 ENSMUST00000082809 Gm24856 snRNA Interval_148881 chr7 89773000 89774509 + 0 NA intron (ENSMUSG00000030621.17, intron 4 of 7) protein_coding-intron (ENSMUSG00000030621.17, intron 3 of 13) -12079 ENSMUSG00000089938.1 ENSMUSG00000089938 ENSMUST00000161734 Gm15744 unprocessed_pseudogene Interval_105980 chr3 90425232 90426484 + 0 NA intron (ENSMUSG00000027933.11, intron 1 of 8) protein_coding-intron (ENSMUSG00000027933.11, intron 1 of 29) -22644 ENSMUSG00000027933.11 ENSMUSG00000027933 ENSMUST00000198562 Ints3 protein_coding Interval_27543 chr11 68565641 68567385 + 0 NA Intergenic Intergenic 10327 ENSMUSG00000048329.7 ENSMUSG00000048329 ENSMUST00000053211 Mfsd6l protein_coding Interval_4135 chr1 70020674 70021424 + 0 NA intron (ENSMUSG00000053153.14, intron 2 of 4) protein_coding-intron (ENSMUSG00000053153.14, intron 11 of 16) 47006 ENSMUSG00000101730.1 ENSMUSG00000101730 ENSMUST00000186767 Gm28580 unprocessed_pseudogene Interval_155406 chr8 33347042 33347630 + 0 NA intron (ENSMUSG00000031583.13, intron 4 of 8) protein_coding-intron (ENSMUSG00000031583.13, intron 3 of 33) -16786 ENSMUSG00000031583.13 ENSMUSG00000031583 ENSMUST00000209293 Wrn protein_coding Interval_143634 chr7 13433969 13434598 + 0 NA Intergenic Intergenic 6009 ENSMUSG00000107945.1 ENSMUSG00000107945 ENSMUST00000205097 Rpl7a-ps14 processed_pseudogene Interval_70469 chr17 10425391 10425855 + 0 NA intron (ENSMUSG00000037196.6, intron 4 of 4) protein_coding-intron (ENSMUSG00000037196.6, intron 4 of 4) -30593 ENSMUSG00000089633.2 ENSMUSG00000089633 ENSMUST00000160738 A230009B12Rik antisense Interval_90287 chr2 29565593 29566452 + 0 NA Intergenic Intergenic 67810 ENSMUSG00000082413.1 ENSMUSG00000082413 ENSMUST00000117074 Gm13401 processed_pseudogene Interval_58919 chr15 40018130 40019819 + 0 NA Intergenic Intergenic -4196 ENSMUSG00000115739.1 ENSMUSG00000115739 ENSMUST00000228464 Gm49254 TEC Interval_91784 chr2 49538126 49538297 + 0 NA intron (ENSMUSG00000069495.12, intron 10 of 13) protein_coding-intron (ENSMUSG00000069495.12, intron 10 of 13) 9336 ENSMUSG00000069495.12 ENSMUSG00000069495 ENSMUST00000152485 Epc2 protein_coding Interval_81305 chr18 57769177 57769451 + 0 NA intron (ENSMUSG00000118391.1, intron 2 of 5) antisense-intron (ENSMUSG00000118391.1, intron 2 of 5) 23046 ENSMUSG00000118391.1 ENSMUSG00000118391 ENSMUST00000236807 Gm19519 antisense Interval_89551 chr2 22653745 22654484 + 0 NA promoter-TSS (ENSMUSG00000106199.1) miRNA-promoter-TSS (ENSMUSG00000106199.1) -169 ENSMUSG00000106199.1 ENSMUSG00000106199 ENSMUST00000198710 Mir3967 miRNA Interval_13611 chr10 20181459 20181892 + 0 NA intron (ENSMUSG00000019996.17, intron 1 of 5) protein_coding-intron (ENSMUSG00000019996.17, intron 1 of 17) 10687 ENSMUSG00000019996.17 ENSMUSG00000019996 ENSMUST00000216308 Map7 protein_coding Interval_6146 chr1 98049883 98050134 + 0 NA TTS (ENSMUSG00000096085.1) snRNA-TTS (ENSMUSG00000096085.1) 186 ENSMUSG00000096085.1 ENSMUSG00000096085 ENSMUST00000178398 Gm24465 snRNA Interval_36143 chr12 36313923 36314340 + 0 NA promoter-TSS (ENSMUSG00000036169.6) protein_coding-promoter-TSS (ENSMUSG00000036169.6) -8 ENSMUSG00000036169.6 ENSMUSG00000036169 ENSMUST00000041407 Sostdc1 protein_coding Interval_103642 chr3 51360916 51361375 + 0 NA Intergenic Intergenic -9077 ENSMUSG00000103654.1 ENSMUSG00000103654 ENSMUST00000191618 Gm37203 processed_pseudogene Interval_154679 chr8 22534081 22534869 + 0 NA intron (ENSMUSG00000037656.9, intron 2 of 2) protein_coding-intron (ENSMUSG00000037656.9, intron 1 of 10) 28249 ENSMUSG00000037656.9 ENSMUSG00000037656 ENSMUST00000210388 Slc20a2 protein_coding Interval_1678 chr1 30974065 30974290 + 0 NA Intergenic Intergenic 3791 ENSMUSG00000117091.1 ENSMUSG00000117091 ENSMUST00000178317 Gm5698 protein_coding Interval_65197 chr16 20469131 20469762 + 0 NA Intergenic Intergenic -19342 ENSMUSG00000093381.1 ENSMUSG00000093381 ENSMUST00000177503 Gm20615 unprocessed_pseudogene Interval_158619 chr8 84798959 84800761 + 0 NA intron (ENSMUSG00000001911.16, intron 1 of 9) protein_coding-intron (ENSMUSG00000001911.16, intron 1 of 8) -31662 ENSMUSG00000033751.5 ENSMUSG00000033751 ENSMUST00000036734 Gadd45gip1 protein_coding Interval_90465 chr2 30625453 30625774 + 0 NA Intergenic Intergenic -4042 ENSMUSG00000086405.1 ENSMUSG00000086405 ENSMUST00000146702 9330198N18Rik lincRNA Interval_138160 chr6 85633115 85633667 + 0 NA exon (ENSMUSG00000107370.1, exon 1 of 1) TEC-exon (ENSMUSG00000107370.1, exon 1 of 1) 527 ENSMUSG00000107370.1 ENSMUSG00000107370 ENSMUST00000201862 Gm43588 TEC Interval_18973 chr10 93500860 93502069 + 0 NA TTS (ENSMUSG00000020017.14) protein_coding-TTS (ENSMUSG00000020017.14) 339 ENSMUSG00000020017.14 ENSMUSG00000020017 ENSMUST00000152883 Hal protein_coding Interval_20452 chr10 117692349 117692979 + 0 NA exon (ENSMUSG00000020184.15, exon 10 of 12) protein_coding-exon (ENSMUSG00000020184.15, exon 10 of 12) 16771 ENSMUSG00000020183.11 ENSMUSG00000020183 ENSMUST00000141991 Cpm protein_coding Interval_103947 chr3 55373700 55374092 + 0 NA intron (ENSMUSG00000027797.15, intron 1 of 4) protein_coding-intron (ENSMUSG00000027797.15, intron 3 of 16) 27128 ENSMUSG00000105975.4 ENSMUSG00000105975 ENSMUST00000196877 Gm42609 antisense Interval_128754 chr5 115099142 115099388 + 0 NA promoter-TSS (ENSMUSG00000072693.2) protein_coding-promoter-TSS (ENSMUSG00000072693.2) -970 ENSMUSG00000072693.2 ENSMUSG00000072693 ENSMUST00000100848 Gm10401 protein_coding Interval_106438 chr3 96292407 96292920 + 0 NA intron (ENSMUSG00000015947.10, intron 2 of 4) protein_coding-intron (ENSMUSG00000015947.10, intron 2 of 5) 1270 ENSMUSG00000015947.10 ENSMUSG00000015947 ENSMUST00000200420 Fcgr1 protein_coding Interval_148492 chr7 81724054 81724442 + 0 NA Intergenic Intergenic -18097 ENSMUSG00000109519.1 ENSMUSG00000109519 ENSMUST00000207607 Gm18806 processed_pseudogene Interval_10985 chr1 177762205 177762417 + 0 NA TTS (ENSMUSG00000015961.8) protein_coding-TTS (ENSMUSG00000015961.8) -24545 ENSMUSG00000089657.1 ENSMUSG00000089657 ENSMUST00000161442 Gm16585 processed_pseudogene Interval_20455 chr10 117709750 117711874 + 0 NA promoter-TSS (ENSMUSG00000020184.15) protein_coding-promoter-TSS (ENSMUSG00000020184.15) -790 ENSMUSG00000020184.15 ENSMUSG00000020184 ENSMUST00000151725 Mdm2 protein_coding Interval_90096 chr2 27968809 27969616 + 0 NA intron (ENSMUSG00000026837.16, intron 18 of 65) protein_coding-intron (ENSMUSG00000026837.16, intron 18 of 65) -53074 ENSMUSG00000026837.16 ENSMUSG00000026837 ENSMUST00000238851 Col5a1 protein_coding Interval_28697 chr11 77806407 77808608 + 0 NA intron (ENSMUSG00000000631.20, intron 1 of 40) protein_coding-intron (ENSMUSG00000000631.20, intron 1 of 39) 6157 ENSMUSG00000000631.20 ENSMUSG00000000631 ENSMUST00000142571 Myo18a protein_coding Interval_101980 chr3 14254877 14255349 + 0 NA Intergenic Intergenic 12326 ENSMUSG00000089231.1 ENSMUSG00000089231 ENSMUST00000158606 Gm23112 snoRNA Interval_118066 chr4 128735267 128735744 + 0 NA intron (ENSMUSG00000028796.17, intron 1 of 5) protein_coding-intron (ENSMUSG00000028796.17, intron 9 of 14) -19859 ENSMUSG00000028794.13 ENSMUSG00000028794 ENSMUST00000030585 A3galt2 protein_coding Interval_116228 chr4 108873686 108874135 + 0 NA Intergenic Intergenic 16418 ENSMUSG00000028567.8 ENSMUSG00000028567 ENSMUST00000154017 Txndc12 protein_coding Interval_154214 chr8 13489971 13490601 + 0 NA intron (ENSMUSG00000031451.6, intron 2 of 14) protein_coding-intron (ENSMUSG00000031451.6, intron 2 of 14) 4204 ENSMUSG00000031451.6 ENSMUSG00000031451 ENSMUST00000033828 Gas6 protein_coding Interval_78786 chr18 20622145 20622619 + 0 NA intron (ENSMUSG00000085595.1, intron 1 of 2) antisense-intron (ENSMUSG00000085595.1, intron 1 of 2) 42878 ENSMUSG00000085595.1 ENSMUSG00000085595 ENSMUST00000130296 Gm16090 antisense Interval_160649 chr8 111312701 111313250 + 0 NA intron (ENSMUSG00000012519.14, intron 3 of 3) protein_coding-intron (ENSMUSG00000012519.14, intron 10 of 10) -5062 ENSMUSG00000110484.1 ENSMUSG00000110484 ENSMUST00000212417 Gm45712 processed_pseudogene Interval_32175 chr11 105938506 105938958 + 0 NA promoter-TSS (ENSMUSG00000019590.16) protein_coding-promoter-TSS (ENSMUSG00000019590.16) -4972 ENSMUSG00000103469.1 ENSMUSG00000103469 ENSMUST00000195385 Gm9910 TEC Interval_25784 chr11 51702921 51703928 + 0 NA intron (ENSMUSG00000036391.16, intron 19 of 22) protein_coding-intron (ENSMUSG00000036391.16, intron 19 of 22) -14550 ENSMUSG00000007777.9 ENSMUSG00000007777 ENSMUST00000109098 0610009B22Rik protein_coding Interval_144315 chr7 24450551 24451131 + 0 NA TTS (ENSMUSG00000062028.8) protein_coding-TTS (ENSMUSG00000062028.8) 1456 ENSMUSG00000062028.8 ENSMUSG00000062028 ENSMUST00000205629 Irgc1 protein_coding Interval_21595 chr10 130411585 130413495 + 0 NA promoter-TSS (ENSMUSG00000040540.6) processed_pseudogene-promoter-TSS (ENSMUSG00000040540.6) 41 ENSMUSG00000040540.6 ENSMUSG00000040540 ENSMUST00000075147 Ctdsp2-ps processed_pseudogene Interval_60066 chr15 64381844 64383249 + 0 NA intron (ENSMUSG00000022377.16, intron 1 of 30) protein_coding-intron (ENSMUSG00000022377.16, intron 1 of 30) -13833 ENSMUSG00000115169.1 ENSMUSG00000115169 ENSMUST00000226656 Gm30563 lincRNA Interval_173698 chrX 102141693 102142157 + 0 NA exon (ENSMUSG00000051220.2, exon 2 of 2) protein_coding-exon (ENSMUSG00000051220.2, exon 2 of 2) 3312 ENSMUSG00000081969.1 ENSMUSG00000081969 ENSMUST00000121940 Gm16471 processed_pseudogene Interval_68761 chr16 85689672 85689897 + 0 NA Intergenic Intergenic 45532 ENSMUSG00000116972.1 ENSMUSG00000116972 ENSMUST00000231765 Gm6278 processed_pseudogene Interval_158194 chr8 79711184 79713070 + 0 NA promoter-TSS (ENSMUSG00000058355.8) protein_coding-promoter-TSS (ENSMUSG00000058355.8) 276 ENSMUSG00000036977.8 ENSMUSG00000036977 ENSMUST00000210485 Anapc10 protein_coding Interval_140259 chr6 115846218 115847565 + 0 NA TTS (ENSMUSG00000030322.12) protein_coding-TTS (ENSMUSG00000030322.12) 2075 ENSMUSG00000030322.12 ENSMUSG00000030322 ENSMUST00000122816 Mbd4 protein_coding Interval_37210 chr12 59808981 59809620 + 0 NA Intergenic Intergenic -88971 ENSMUSG00000112355.1 ENSMUSG00000112355 ENSMUST00000219078 Gm48285 TEC Interval_145309 chr7 31766094 31766316 + 0 NA promoter-TSS (ENSMUSG00000100517.1) processed_pseudogene-promoter-TSS (ENSMUSG00000100517.1) -747 ENSMUSG00000100517.1 ENSMUSG00000100517 ENSMUST00000187984 Gm29627 processed_pseudogene Interval_54317 chr14 67607609 67608745 + 0 NA Intergenic Intergenic -19385 ENSMUSG00000114514.1 ENSMUSG00000114514 ENSMUST00000224499 Gm47010 processed_pseudogene Interval_88445 chr2 5110773 5111609 + 0 NA Intergenic Intergenic -26585 ENSMUSG00000026676.7 ENSMUSG00000026676 ENSMUST00000027988 Ccdc3 protein_coding Interval_174602 chrX 159711421 159711810 + 0 NA intron (ENSMUSG00000040990.17, intron 1 of 16) protein_coding-intron (ENSMUSG00000040990.17, intron 2 of 19) 123150 ENSMUSG00000083906.1 ENSMUSG00000083906 ENSMUST00000119345 Gm15186 processed_pseudogene Interval_122435 chr5 22605039 22605534 + 0 NA intron (ENSMUSG00000097207.7, intron 3 of 4) lincRNA-intron (ENSMUSG00000097207.7, intron 3 of 4) 7896 ENSMUSG00000081855.4 ENSMUSG00000081855 ENSMUST00000121001 Rpl17-ps5 processed_pseudogene Interval_130988 chr5 134424294 134424748 + 0 NA intron (ENSMUSG00000023079.14, intron 1 of 3) protein_coding-intron (ENSMUSG00000023079.14, intron 1 of 30) 8282 ENSMUSG00000077437.1 ENSMUSG00000077437 ENSMUST00000104249 n-R5s178 rRNA Interval_36920 chr12 55343708 55344986 + 0 NA intron (ENSMUSG00000021023.14, intron 4 of 6) protein_coding-intron (ENSMUSG00000021023.14, intron 4 of 6) -39875 ENSMUSG00000021024.14 ENSMUSG00000021024 ENSMUST00000162972 Psma6 protein_coding Interval_51702 chr14 31507794 31508092 + 0 NA TTS (ENSMUSG00000021890.6) protein_coding-TTS (ENSMUSG00000021890.6) -3405 ENSMUSG00000115102.1 ENSMUSG00000115102 ENSMUST00000226995 Gm49270 TEC Interval_155924 chr8 41075388 41076490 + 0 NA intron (ENSMUSG00000045636.16, intron 2 of 3) protein_coding-intron (ENSMUSG00000045636.16, intron 3 of 13) 22829 ENSMUSG00000085672.1 ENSMUSG00000085672 ENSMUST00000125903 Gm16193 antisense Interval_137905 chr6 83278675 83279237 + 0 NA intron (ENSMUSG00000068323.12, intron 1 of 2) protein_coding-intron (ENSMUSG00000068323.12, intron 14 of 24) 1563 ENSMUSG00000068323.12 ENSMUSG00000068323 ENSMUST00000131432 Slc4a5 protein_coding Interval_144709 chr7 27657962 27659307 + 0 NA intron (ENSMUSG00000040390.13, intron 8 of 10) protein_coding-intron (ENSMUSG00000040390.13, intron 8 of 9) 4719 ENSMUSG00000007944.8 ENSMUSG00000007944 ENSMUST00000008088 Ttc9b protein_coding Interval_142653 chr6 144738066 144738606 + 0 NA intron (ENSMUSG00000086282.1, intron 2 of 2) protein_coding-intron (ENSMUSG00000041540.16, intron 1 of 13) 14771 ENSMUSG00000086731.1 ENSMUSG00000086731 ENSMUST00000152192 Sox5os5 antisense Interval_20552 chr10 118859567 118860378 + 0 NA promoter-TSS (ENSMUSG00000104443.1) TEC-promoter-TSS (ENSMUSG00000104443.1) -854 ENSMUSG00000104443.1 ENSMUSG00000104443 ENSMUST00000191892 4932442E05Rik TEC Interval_110592 chr4 4342709 4342966 + 0 NA Intergenic Intergenic 185882 ENSMUSG00000085155.3 ENSMUSG00000085155 ENSMUST00000136880 Gm11780 processed_pseudogene Interval_126770 chr5 92797570 92798698 + 0 NA intron (ENSMUSG00000029381.16, intron 2 of 11) protein_coding-intron (ENSMUSG00000029381.16, intron 2 of 10) -9572 ENSMUSG00000089268.1 ENSMUSG00000089268 ENSMUST00000158643 Mir1961 miRNA Interval_121904 chr5 9417338 9417625 + 0 NA promoter-TSS (ENSMUSG00000056004.16) protein_coding-promoter-TSS (ENSMUSG00000056004.16) 41777 ENSMUSG00000077896.1 ENSMUSG00000077896 ENSMUST00000104703 Mir879 miRNA Interval_58188 chr15 30515127 30515342 + 0 NA intron (ENSMUSG00000022240.10, intron 3 of 5) protein_coding-intron (ENSMUSG00000022240.10, intron 3 of 22) -75053 ENSMUSG00000087836.1 ENSMUSG00000087836 ENSMUST00000157211 Gm23956 rRNA Interval_123485 chr5 32839923 32840578 + 0 NA intron (ENSMUSG00000054280.14, intron 1 of 1) protein_coding-intron (ENSMUSG00000054280.14, intron 3 of 10) 2121 ENSMUSG00000106654.1 ENSMUSG00000106654 ENSMUST00000199229 Gm2623 processed_pseudogene Interval_32901 chr11 112924976 112925739 + 0 NA Intergenic Intergenic 100178 ENSMUSG00000020624.3 ENSMUSG00000020624 ENSMUST00000153429 4933434M16Rik lincRNA Interval_41660 chr12 117476771 117476955 + 0 NA Intergenic Intergenic -97479 ENSMUSG00000089482.1 ENSMUSG00000089482 ENSMUST00000158857 Gm24741 rRNA Interval_133305 chr5 151388950 151389233 + 0 NA intron (ENSMUSG00000097321.5, intron 3 of 3) processed_transcript-intron (ENSMUSG00000097321.5, intron 3 of 3) -11053 ENSMUSG00000097321.5 ENSMUSG00000097321 ENSMUST00000201853 1700028E10Rik processed_transcript Interval_11963 chr1 187779872 187780582 + 0 NA intron (ENSMUSG00000026610.13, intron 1 of 1) protein_coding-intron (ENSMUSG00000026610.13, intron 1 of 7) 67422 ENSMUSG00000118492.1 ENSMUSG00000118492 ENSMUST00000238811 AC121143.1 processed_pseudogene Interval_65176 chr16 20368215 20368561 + 0 NA TTS (ENSMUSG00000022822.16) protein_coding-TTS (ENSMUSG00000022822.16) 30560 ENSMUSG00000022822.16 ENSMUSG00000022822 ENSMUST00000231522 Abcc5 protein_coding Interval_53353 chr14 56571413 56572094 + 0 NA promoter-TSS (ENSMUSG00000064128.8) protein_coding-promoter-TSS (ENSMUSG00000064128.8) -19268 ENSMUSG00000064128.8 ENSMUSG00000064128 ENSMUST00000224748 Cenpj protein_coding Interval_84407 chr19 10676091 10677178 + 0 NA exon (ENSMUSG00000024738.6, exon 2 of 9) protein_coding-exon (ENSMUSG00000024738.6, exon 2 of 9) -5661 ENSMUSG00000024738.6 ENSMUSG00000024738 ENSMUST00000225016 Pga5 protein_coding Interval_118697 chr4 133233237 133234169 + 0 NA Intergenic Intergenic -17146 ENSMUSG00000028862.6 ENSMUSG00000028862 ENSMUST00000134895 Map3k6 protein_coding Interval_152521 chr7 133788816 133790284 + 0 NA promoter-TSS (ENSMUSG00000053111.13) protein_coding-promoter-TSS (ENSMUSG00000053111.13) 65 ENSMUSG00000053111.13 ENSMUSG00000053111 ENSMUST00000211077 Fank1 protein_coding Interval_63989 chr16 5057676 5058427 + 0 NA intron (ENSMUSG00000039473.8, intron 2 of 17) protein_coding-intron (ENSMUSG00000039473.8, intron 3 of 18) 2831 ENSMUSG00000077367.1 ENSMUSG00000077367 ENSMUST00000104179 Gm23483 snRNA Interval_43017 chr13 23157409 23158363 + 0 NA Intergenic Intergenic -1426 ENSMUSG00000061376.2 ENSMUSG00000061376 ENSMUST00000076180 Vmn1r219 protein_coding Interval_39360 chr12 86898907 86899939 + 0 NA Intergenic Intergenic -14625 ENSMUSG00000034168.7 ENSMUSG00000034168 ENSMUST00000038422 Irf2bpl protein_coding Interval_150888 chr7 116187650 116188953 + 0 NA intron (ENSMUSG00000045659.18, intron 4 of 18) protein_coding-intron (ENSMUSG00000045659.18, intron 2 of 24) -58776 ENSMUSG00000045659.18 ENSMUSG00000045659 ENSMUST00000205446 Plekha7 protein_coding Interval_65851 chr16 29786132 29786404 + 0 NA Intergenic Intergenic -24790 ENSMUSG00000097307.1 ENSMUSG00000097307 ENSMUST00000181815 Gm26834 lincRNA Interval_109243 chr3 138197559 138198930 + 0 NA intron (ENSMUSG00000012042.9, intron 2 of 10) protein_coding-intron (ENSMUSG00000012042.9, intron 2 of 10) -23227 ENSMUSG00000055301.8 ENSMUSG00000055301 ENSMUST00000196133 Adh7 protein_coding Interval_37304 chr12 65024166 65024364 + 0 NA Intergenic Intergenic -19025 ENSMUSG00000035597.19 ENSMUSG00000035597 ENSMUST00000220729 Prpf39 protein_coding Interval_41668 chr12 117591924 117592661 + 0 NA intron (ENSMUSG00000041992.9, intron 5 of 8) protein_coding-intron (ENSMUSG00000041992.9, intron 7 of 27) -9747 ENSMUSG00000113575.1 ENSMUSG00000113575 ENSMUST00000223270 A930023M06Rik sense_intronic Interval_62537 chr15 94487475 94487662 + 0 NA Intergenic Intergenic 55925 ENSMUSG00000033356.3 ENSMUSG00000033356 ENSMUST00000134061 Pus7l protein_coding Interval_79654 chr18 34270049 34270279 + 0 NA intron (ENSMUSG00000005871.15, intron 3 of 13) protein_coding-intron (ENSMUSG00000005871.15, intron 4 of 8) 49240 ENSMUSG00000005871.15 ENSMUSG00000005871 ENSMUST00000167136 Apc protein_coding Interval_71166 chr17 20627489 20628440 + 0 NA Intergenic Intergenic -3087 ENSMUSG00000060701.1 ENSMUSG00000060701 ENSMUST00000071189 Fpr-rs3 protein_coding Interval_13496 chr10 18735293 18735853 + 0 NA intron (ENSMUSG00000019852.7, intron 1 of 33) protein_coding-intron (ENSMUSG00000019852.7, intron 1 of 32) -7896 ENSMUSG00000111474.1 ENSMUSG00000111474 ENSMUST00000214043 Gm32926 antisense Interval_88027 chr19 58082289 58083062 + 0 NA intron (ENSMUSG00000054843.9, intron 28 of 28) protein_coding-intron (ENSMUSG00000054843.9, intron 28 of 28) 13356 ENSMUSG00000117871.1 ENSMUSG00000117871 ENSMUST00000235250 Gm50287 lincRNA Interval_141200 chr6 125561016 125561283 + 0 NA intron (ENSMUSG00000001930.17, intron 3 of 14) protein_coding-intron (ENSMUSG00000001930.17, intron 4 of 10) 8186 ENSMUSG00000001930.17 ENSMUSG00000001930 ENSMUST00000146264 Vwf protein_coding Interval_104078 chr3 58372238 58373002 + 0 NA Intergenic Intergenic -32081 ENSMUSG00000105154.1 ENSMUSG00000105154 ENSMUST00000196189 Gm20128 processed_pseudogene Interval_101490 chr2 181870483 181870676 + 0 NA exon (ENSMUSG00000038628.8, exon 3 of 3) protein_coding-exon (ENSMUSG00000038628.8, exon 3 of 3) 6219 ENSMUSG00000038628.8 ENSMUSG00000038628 ENSMUST00000153214 Polr3k protein_coding Interval_16521 chr10 63338327 63339776 + 0 NA promoter-TSS (ENSMUSG00000020063.16) protein_coding-promoter-TSS (ENSMUSG00000020063.16) -19 ENSMUSG00000020063.16 ENSMUSG00000020063 ENSMUST00000131371 Sirt1 protein_coding Interval_30840 chr11 96809187 96809409 + 0 NA TTS (ENSMUSG00000018666.13) protein_coding-TTS (ENSMUSG00000018666.13) -13473 ENSMUSG00000081249.3 ENSMUSG00000081249 ENSMUST00000119491 Gm11517 processed_pseudogene Interval_81562 chr18 61701958 61702382 + 0 NA TTS (ENSMUSG00000024579.7) protein_coding-TTS (ENSMUSG00000024579.7) 5443 ENSMUSG00000024579.7 ENSMUSG00000024579 ENSMUST00000154763 Pcyox1l protein_coding Interval_21073 chr10 125940338 125942112 + 0 NA Intergenic Intergenic -25009 ENSMUSG00000020105.9 ENSMUSG00000020105 ENSMUST00000219974 Lrig3 protein_coding Interval_62894 chr15 97767425 97768402 + 0 NA promoter-TSS (ENSMUSG00000022469.17) protein_coding-promoter-TSS (ENSMUSG00000022469.17) -851 ENSMUSG00000022469.17 ENSMUSG00000022469 ENSMUST00000135080 Rapgef3 protein_coding Interval_54260 chr14 66955480 66955736 + 0 NA Intergenic Intergenic -11574 ENSMUSG00000114558.1 ENSMUSG00000114558 ENSMUST00000224795 Gm9570 processed_pseudogene Interval_11971 chr1 187916803 187916995 + 0 NA intron (ENSMUSG00000026610.13, intron 3 of 3) protein_coding-intron (ENSMUSG00000026610.13, intron 2 of 7) 92091 ENSMUSG00000103577.1 ENSMUSG00000103577 ENSMUST00000195397 9330162B11Rik antisense Interval_33239 chr11 115427450 115428511 + 0 NA intron (ENSMUSG00000016940.18, intron 4 of 5) protein_coding-intron (ENSMUSG00000016940.18, intron 4 of 5) 7668 ENSMUSG00000016940.18 ENSMUSG00000016940 ENSMUST00000143775 Kctd2 protein_coding Interval_24119 chr11 30497355 30497588 + 0 NA Intergenic Intergenic -25644 ENSMUSG00000040919.13 ENSMUSG00000040919 ENSMUST00000152718 4930505A04Rik protein_coding Interval_8088 chr1 135668304 135669133 + 0 NA intron (ENSMUSG00000009418.16, intron 1 of 30) protein_coding-intron (ENSMUSG00000009418.16, intron 1 of 1) -51343 ENSMUSG00000026421.14 ENSMUSG00000026421 ENSMUST00000027677 Csrp1 protein_coding Interval_79047 chr18 24163938 24164152 + 0 NA Intergenic Intergenic -42092 ENSMUSG00000047989.11 ENSMUSG00000047989 ENSMUST00000125169 Ino80c protein_coding Interval_165900 chr9 54486430 54486728 + 0 NA intron (ENSMUSG00000041268.17, intron 1 of 15) protein_coding-intron (ENSMUSG00000041268.17, intron 1 of 43) -50606 ENSMUSG00000087801.1 ENSMUSG00000087801 ENSMUST00000157176 Gm25980 misc_RNA Interval_160323 chr8 108376347 108376566 + 0 NA intron (ENSMUSG00000038872.10, intron 3 of 15) protein_coding-intron (ENSMUSG00000038872.10, intron 3 of 15) 160765 ENSMUSG00000109868.1 ENSMUSG00000109868 ENSMUST00000211262 Gm39244 lincRNA Interval_58368 chr15 33687122 33688086 + 0 NA exon (ENSMUSG00000038984.4, exon 1 of 1) protein_coding-exon (ENSMUSG00000038984.4, exon 1 of 1) 280 ENSMUSG00000038984.4 ENSMUSG00000038984 ENSMUST00000042021 Tspyl5 protein_coding Interval_126918 chr5 97125249 97126243 + 0 NA Intergenic Intergenic -14303 ENSMUSG00000055725.11 ENSMUSG00000055725 ENSMUST00000132127 Paqr3 protein_coding Interval_47031 chr13 74493562 74494644 + 0 NA promoter-TSS (ENSMUSG00000069208.9) protein_coding-promoter-TSS (ENSMUSG00000069208.9) -40 ENSMUSG00000116646.1 ENSMUSG00000116646 ENSMUST00000231421 Gm49763 antisense Interval_112695 chr4 44125259 44125779 + 0 NA TTS (ENSMUSG00000035696.15) protein_coding-TTS (ENSMUSG00000035696.15) 2281 ENSMUSG00000084274.2 ENSMUSG00000084274 ENSMUST00000148026 Gm12504 transcribed_processed_pseudogene Interval_32079 chr11 105150808 105153573 + 0 NA Intergenic Intergenic 10976 ENSMUSG00000088259.1 ENSMUSG00000088259 ENSMUST00000157634 Gm24290 misc_RNA Interval_161071 chr8 117294093 117295005 + 0 NA intron (ENSMUSG00000034390.16, intron 1 of 10) protein_coding-intron (ENSMUSG00000034390.16, intron 1 of 20) -128867 ENSMUSG00000034390.16 ENSMUSG00000034390 ENSMUST00000212884 Cmip protein_coding Interval_45811 chr13 58232086 58232991 + 0 NA TTS (ENSMUSG00000021552.7) protein_coding-TTS (ENSMUSG00000021552.7) 395 ENSMUSG00000114929.1 ENSMUSG00000114929 ENSMUST00000224942 Gm48441 antisense Interval_90231 chr2 29169125 29169577 + 0 NA intron (ENSMUSG00000043535.13, intron 2 of 8) protein_coding-intron (ENSMUSG00000043535.13, intron 20 of 25) 43465 ENSMUSG00000043535.13 ENSMUSG00000043535 ENSMUST00000145422 Setx protein_coding Interval_152359 chr7 132346908 132347669 + 0 NA intron (ENSMUSG00000030849.18, intron 2 of 6) protein_coding-intron (ENSMUSG00000030849.18, intron 2 of 6) 18575 ENSMUSG00000109137.1 ENSMUSG00000109137 ENSMUST00000207222 Gm34908 lincRNA Interval_40307 chr12 103425271 103426454 + 0 NA promoter-TSS (ENSMUSG00000041645.14) protein_coding-promoter-TSS (ENSMUSG00000041645.14) -78 ENSMUSG00000041645.14 ENSMUSG00000041645 ENSMUST00000223233 Ddx24 protein_coding Interval_136119 chr6 51193122 51194980 + 0 NA Intergenic Intergenic 75859 ENSMUSG00000065505.1 ENSMUSG00000065505 ENSMUST00000083571 Mir148a miRNA Interval_52102 chr14 36099520 36101078 + 0 NA TTS (ENSMUSG00000096405.3) protein_coding-TTS (ENSMUSG00000096405.3) 5382 ENSMUSG00000096405.3 ENSMUSG00000096405 ENSMUST00000177985 4930474N05Rik protein_coding Interval_173433 chrX 93615927 93616142 + 0 NA intron (ENSMUSG00000006678.6, intron 4 of 36) protein_coding-intron (ENSMUSG00000006678.6, intron 4 of 36) -22580 ENSMUSG00000087255.2 ENSMUSG00000087255 ENSMUST00000121255 Gm6985 processed_pseudogene Interval_142160 chr6 137708874 137709294 + 0 NA Intergenic Intergenic -35956 ENSMUSG00000030224.10 ENSMUSG00000030224 ENSMUST00000137235 Strap protein_coding Interval_41117 chr12 111284251 111285958 + 0 NA exon (ENSMUSG00000097381.2, exon 1 of 3) antisense-exon (ENSMUSG00000097381.2, exon 1 of 3) 342 ENSMUSG00000097381.2 ENSMUSG00000097381 ENSMUST00000181055 A230087F16Rik antisense Interval_94408 chr2 90826254 90826454 + 0 NA intron (ENSMUSG00000040812.14, intron 18 of 18) protein_coding-intron (ENSMUSG00000040812.14, intron 18 of 21) -20877 ENSMUSG00000027282.17 ENSMUSG00000027282 ENSMUST00000142350 Mtch2 protein_coding Interval_51244 chr14 25505078 25505995 + 0 NA intron (ENSMUSG00000007817.15, intron 2 of 23) protein_coding-intron (ENSMUSG00000007817.15, intron 2 of 23) 25482 ENSMUSG00000114539.1 ENSMUSG00000114539 ENSMUST00000224666 Gm47921 sense_intronic Interval_138258 chr6 86668714 86669776 + 0 NA promoter-TSS (ENSMUSG00000001156.9) protein_coding-promoter-TSS (ENSMUSG00000001156.9) -128 ENSMUSG00000001156.9 ENSMUSG00000001156 ENSMUST00000205076 Mxd1 protein_coding Interval_91372 chr2 38347908 38348664 + 0 NA promoter-TSS (ENSMUSG00000098383.1) antisense-promoter-TSS (ENSMUSG00000098383.1) 30 ENSMUSG00000098383.1 ENSMUSG00000098383 ENSMUST00000184325 Gm27197 antisense Interval_97289 chr2 133113608 133113955 + 0 NA Intergenic Intergenic -66229 ENSMUSG00000082940.1 ENSMUSG00000082940 ENSMUST00000119075 Gm14103 processed_pseudogene Interval_170654 chr9 109920742 109920950 + 0 NA Intergenic Intergenic 3904 ENSMUSG00000105191.1 ENSMUSG00000105191 ENSMUST00000197587 Gm4644 processed_pseudogene Interval_47215 chr13 78179118 78179949 + 0 NA exon (ENSMUSG00000114649.1, exon 2 of 2) lincRNA-exon (ENSMUSG00000114649.1, exon 2 of 2) 3635 ENSMUSG00000114401.1 ENSMUSG00000114401 ENSMUST00000225211 Gm38604 antisense Interval_132091 chr5 142736477 142736840 + 0 NA promoter-TSS (ENSMUSG00000039477.16) protein_coding-promoter-TSS (ENSMUSG00000039477.16) 29364 ENSMUSG00000039477.16 ENSMUSG00000039477 ENSMUST00000198181 Tnrc18 protein_coding Interval_76747 chr17 83803033 83804395 + 0 NA intron (ENSMUSG00000055817.18, intron 14 of 16) protein_coding-intron (ENSMUSG00000055817.18, intron 15 of 16) 43075 ENSMUSG00000000673.9 ENSMUSG00000000673 ENSMUST00000234312 Haao protein_coding Interval_174595 chrX 159588777 159589224 + 0 NA TTS (ENSMUSG00000083906.1) processed_pseudogene-TTS (ENSMUSG00000083906.1) 535 ENSMUSG00000083906.1 ENSMUSG00000083906 ENSMUST00000119345 Gm15186 processed_pseudogene Interval_58095 chr15 27850751 27851829 + 0 NA exon (ENSMUSG00000022263.10, exon 1 of 1) protein_coding-exon (ENSMUSG00000022263.10, exon 1 of 1) -5017 ENSMUSG00000115641.1 ENSMUSG00000115641 ENSMUST00000228765 Gm9891 TEC Interval_147544 chr7 68213438 68213715 + 0 NA TTS (ENSMUSG00000005533.10) protein_coding-TTS (ENSMUSG00000005533.10) 1738 ENSMUSG00000005533.10 ENSMUSG00000005533 ENSMUST00000208871 Igf1r protein_coding Interval_99300 chr2 158786971 158787746 + 0 NA TTS (ENSMUSG00000027654.2) protein_coding-TTS (ENSMUSG00000027654.2) 5950 ENSMUSG00000027654.2 ENSMUSG00000027654 ENSMUST00000151801 Fam83d protein_coding Interval_49322 chr13 110747640 110748543 + 0 NA Intergenic Intergenic 64179 ENSMUSG00000114775.1 ENSMUSG00000114775 ENSMUST00000225669 Gm33172 lincRNA Interval_130941 chr5 134172922 134173431 + 0 NA intron (ENSMUSG00000061979.8, intron 1 of 10) protein_coding-intron (ENSMUSG00000061979.8, intron 1 of 10) -3170 ENSMUSG00000104195.1 ENSMUSG00000104195 ENSMUST00000192229 B230377A18Rik TEC Interval_28076 chr11 72666285 72667405 + 0 NA intron (ENSMUSG00000020794.13, intron 3 of 6) protein_coding-intron (ENSMUSG00000020794.13, intron 2 of 5) 17920 ENSMUSG00000092725.1 ENSMUSG00000092725 ENSMUST00000174984 Gm25678 miRNA Interval_68860 chr16 87661164 87661899 + 0 NA Intergenic Intergenic -37473 ENSMUSG00000025612.5 ENSMUSG00000025612 ENSMUST00000156958 Bach1 protein_coding Interval_38658 chr12 80883992 80884186 + 0 NA Intergenic Intergenic -27388 ENSMUSG00000065115.1 ENSMUSG00000065115 ENSMUST00000083181 Gm23298 snRNA Interval_4638 chr1 75594069 75596077 + 0 NA Intergenic Intergenic 26990 ENSMUSG00000083244.1 ENSMUSG00000083244 ENSMUST00000117745 Gm15180 processed_pseudogene Interval_104900 chr3 78825328 78825935 + 0 NA Intergenic Intergenic -16593 ENSMUSG00000088463.1 ENSMUSG00000088463 ENSMUST00000157838 Gm24749 misc_RNA Interval_14130 chr10 27948771 27949416 + 0 NA Intergenic Intergenic 12729 ENSMUSG00000064208.6 ENSMUSG00000064208 ENSMUST00000077776 Gm10145 processed_pseudogene Interval_36393 chr12 43211610 43213169 + 0 NA Intergenic Intergenic -93754 ENSMUSG00000112904.1 ENSMUSG00000112904 ENSMUST00000217732 Gm47030 lincRNA Interval_18479 chr10 86483496 86484189 + 0 NA intron (ENSMUSG00000059602.14, intron 1 of 6) protein_coding-intron (ENSMUSG00000059602.14, intron 1 of 13) 8055 ENSMUSG00000059602.14 ENSMUSG00000059602 ENSMUST00000139197 Syn3 protein_coding Interval_174256 chrX 142189207 142189503 + 0 NA exon (ENSMUSG00000042282.4, exon 2 of 20) protein_coding-exon (ENSMUSG00000042282.4, exon 2 of 20) 7576 ENSMUSG00000042282.4 ENSMUSG00000042282 ENSMUST00000042530 Gucy2f protein_coding Interval_170955 chr9 113263948 113264189 + 0 NA Intergenic Intergenic -23639 ENSMUSG00000111022.1 ENSMUSG00000111022 ENSMUST00000217623 Gm36367 lincRNA Interval_16621 chr10 66420905 66422241 + 0 NA Intergenic Intergenic -61980 ENSMUSG00000077439.1 ENSMUSG00000077439 ENSMUST00000104251 Gm22594 snoRNA Interval_134747 chr6 31188976 31189731 + 0 NA intron (ENSMUSG00000044471.12, intron 1 of 2) lincRNA-intron (ENSMUSG00000044471.12, intron 1 of 2) 27013 ENSMUSG00000044471.12 ENSMUSG00000044471 ENSMUST00000229779 Lncpint lincRNA Interval_34941 chr12 14521790 14522743 + 0 NA Intergenic Intergenic 15679 ENSMUSG00000075760.1 ENSMUSG00000075760 ENSMUST00000101814 Gm25414 snRNA Interval_16637 chr10 66711552 66711775 + 0 NA Intergenic Intergenic 13422 ENSMUSG00000112202.1 ENSMUSG00000112202 ENSMUST00000217731 Gm31181 lincRNA Interval_145065 chr7 29834758 29835960 + 0 NA exon (ENSMUSG00000050855.16, exon 4 of 4) protein_coding-exon (ENSMUSG00000050855.16, exon 4 of 4) 16368 ENSMUSG00000011427.16 ENSMUSG00000011427 ENSMUST00000207328 Zfp790 protein_coding Interval_51551 chr14 30078334 30078788 + 0 NA TTS (ENSMUSG00000015968.18) protein_coding-TTS (ENSMUSG00000015968.18) -16201 ENSMUSG00000118437.1 ENSMUSG00000118437 ENSMUST00000238444 Gm50467 antisense Interval_129606 chr5 121273652 121273987 + 0 NA intron (ENSMUSG00000042744.16, intron 8 of 75) protein_coding-intron (ENSMUSG00000042744.16, intron 8 of 75) -12411 ENSMUSG00000042744.16 ENSMUSG00000042744 ENSMUST00000130655 Hectd4 protein_coding Interval_71734 chr17 25762267 25763430 + 0 NA Intergenic Intergenic 2646 ENSMUSG00000117741.1 ENSMUSG00000117741 ENSMUST00000236363 1700080C20Rik lincRNA Interval_133081 chr5 149695131 149695604 + 0 NA intron (ENSMUSG00000051950.10, intron 1 of 14) protein_coding-intron (ENSMUSG00000051950.10, intron 1 of 14) -34144 ENSMUSG00000080002.2 ENSMUSG00000080002 ENSMUST00000116118 Gm5566 processed_pseudogene Interval_127321 chr5 102845021 102846437 + 0 NA exon (ENSMUSG00000057315.14, exon 1 of 7) protein_coding-exon (ENSMUSG00000057315.14, exon 1 of 7) 36680 ENSMUSG00000057315.14 ENSMUSG00000057315 ENSMUST00000070000 Arhgap24 protein_coding Interval_77004 chr17 85585656 85585860 + 0 NA Intergenic Intergenic -13775 ENSMUSG00000098438.1 ENSMUSG00000098438 ENSMUST00000184962 Gm27178 processed_pseudogene Interval_67039 chr16 41955886 41956164 + 0 NA intron (ENSMUSG00000061080.11, intron 5 of 8) protein_coding-intron (ENSMUSG00000061080.11, intron 3 of 5) 228892 ENSMUSG00000116841.1 ENSMUSG00000116841 ENSMUST00000232237 Gm49737 processed_pseudogene Interval_171953 chr9 122911805 122912169 + 0 NA exon (ENSMUSG00000111063.1, exon 3 of 3) transcribed_unprocessed_pseudogene-exon (ENSMUSG00000111063.1, exon 3 of 3) 2996 ENSMUSG00000111063.1 ENSMUSG00000111063 ENSMUST00000216462 Zkscan7 transcribed_unprocessed_pseudogene Interval_139418 chr6 99986047 99986413 + 0 NA intron (ENSMUSG00000108151.1, intron 1 of 3) lincRNA-intron (ENSMUSG00000108151.1, intron 1 of 3) 4985 ENSMUSG00000108151.1 ENSMUSG00000108151 ENSMUST00000204791 Gm33201 lincRNA Interval_157874 chr8 75123423 75124040 + 0 NA intron (ENSMUSG00000005410.6, intron 12 of 15) protein_coding-intron (ENSMUSG00000005410.6, intron 13 of 16) 14107 ENSMUSG00000005410.6 ENSMUSG00000005410 ENSMUST00000211912 Mcm5 protein_coding Interval_137983 chr6 83927027 83927837 + 0 NA intron (ENSMUSG00000030016.14, intron 1 of 26) protein_coding-intron (ENSMUSG00000030016.14, intron 1 of 27) -20466 ENSMUSG00000030016.14 ENSMUSG00000030016 ENSMUST00000204823 Zfp638 protein_coding Interval_163240 chr9 19098101 19098333 + 0 NA Intergenic Intergenic -22378 ENSMUSG00000059303.6 ENSMUSG00000059303 ENSMUST00000074986 Olfr836 protein_coding Interval_155082 chr8 26260119 26260525 + 0 NA Intergenic Intergenic -6655 ENSMUSG00000110417.1 ENSMUSG00000110417 ENSMUST00000210102 Gm31727 lincRNA Interval_54373 chr14 68020831 68021311 + 0 NA Intergenic Intergenic 30259 ENSMUSG00000114621.1 ENSMUSG00000114621 ENSMUST00000223853 Gm31107 lincRNA Interval_161448 chr8 120518398 120519379 + 0 NA intron (ENSMUSG00000031822.20, intron 1 of 15) protein_coding-intron (ENSMUSG00000031822.20, intron 1 of 15) -1727 ENSMUSG00000097983.1 ENSMUSG00000097983 ENSMUST00000182423 Gm26971 sense_intronic Interval_160579 chr8 110825729 110826071 + 0 NA intron (ENSMUSG00000033732.10, intron 12 of 12) protein_coding-intron (ENSMUSG00000033732.10, intron 12 of 25) 12716 ENSMUSG00000080396.1 ENSMUSG00000080396 ENSMUST00000116746 Snord111 snoRNA Interval_110002 chr3 152414799 152415209 + 0 NA intron (ENSMUSG00000039068.16, intron 1 of 13) protein_coding-intron (ENSMUSG00000039068.16, intron 1 of 13) 18872 ENSMUSG00000039068.16 ENSMUSG00000039068 ENSMUST00000135044 Zzz3 protein_coding Interval_30826 chr11 96732894 96733150 + 0 NA TTS (ENSMUSG00000057058.16) protein_coding-TTS (ENSMUSG00000057058.16) -33780 ENSMUSG00000085242.1 ENSMUSG00000085242 ENSMUST00000124865 Gm11537 antisense Interval_681 chr1 9847626 9848924 + 0 NA promoter-TSS (ENSMUSG00000025915.14) protein_coding-promoter-TSS (ENSMUSG00000025915.14) -13673 ENSMUSG00000088916.1 ENSMUSG00000088916 ENSMUST00000158291 Gm22607 snRNA Interval_158877 chr8 87656102 87657167 + 0 NA Intergenic Intergenic 19977 ENSMUSG00000089301.1 ENSMUSG00000089301 ENSMUST00000158676 Gm24841 misc_RNA Interval_78562 chr18 14723760 14724952 + 0 NA intron (ENSMUSG00000036743.4, intron 2 of 6) protein_coding-intron (ENSMUSG00000036743.4, intron 2 of 6) -2190 ENSMUSG00000036743.4 ENSMUSG00000036743 ENSMUST00000235037 Psma8 protein_coding Interval_105898 chr3 89975503 89976359 + 0 NA Intergenic Intergenic -7273 ENSMUSG00000105082.2 ENSMUSG00000105082 ENSMUST00000199555 Aqp10-ps unprocessed_pseudogene Interval_135309 chr6 38210063 38210668 + 0 NA intron (ENSMUSG00000063455.16, intron 1 of 19) protein_coding-intron (ENSMUSG00000063455.16, intron 1 of 19) 43644 ENSMUSG00000063455.16 ENSMUSG00000063455 ENSMUST00000152464 D630045J12Rik protein_coding Interval_43667 chr13 34814629 34815490 + 0 NA promoter-TSS (ENSMUSG00000113484.1) lincRNA-promoter-TSS (ENSMUSG00000113484.1) -515 ENSMUSG00000113484.1 ENSMUSG00000113484 ENSMUST00000221289 Gm47157 lincRNA Interval_141522 chr6 128859709 128860350 + 0 NA intron (ENSMUSG00000090164.8, intron 2 of 2) protein_coding-intron (ENSMUSG00000090164.8, intron 2 of 2) 5165 ENSMUSG00000107633.1 ENSMUSG00000107633 ENSMUST00000204652 Gm44078 TEC Interval_80287 chr18 38840949 38841765 + 0 NA TTS (ENSMUSG00000036585.16) protein_coding-TTS (ENSMUSG00000036585.16) 25646 ENSMUSG00000036585.16 ENSMUSG00000036585 ENSMUST00000134864 Fgf1 protein_coding Interval_19362 chr10 97926871 97927120 + 0 NA intron (ENSMUSG00000074776.4, intron 1 of 4) lincRNA-intron (ENSMUSG00000074776.4, intron 1 of 4) 40095 ENSMUSG00000074776.4 ENSMUSG00000074776 ENSMUST00000099324 Gm10754 lincRNA Interval_94814 chr2 94665845 94666080 + 0 NA Intergenic Intergenic 44004 ENSMUSG00000077678.1 ENSMUSG00000077678 ENSMUST00000104490 Gm24318 snoRNA Interval_25164 chr11 44682244 44683077 + 0 NA intron (ENSMUSG00000057098.14, intron 6 of 15) protein_coding-intron (ENSMUSG00000057098.14, intron 6 of 15) -19984 ENSMUSG00000085784.1 ENSMUSG00000085784 ENSMUST00000130493 Gm12158 antisense Interval_152792 chr7 137618409 137618691 + 0 NA Intergenic Intergenic -30539 ENSMUSG00000110145.1 ENSMUSG00000110145 ENSMUST00000210825 Gm45683 TEC Interval_166071 chr9 56257773 56258279 + 0 NA exon (ENSMUSG00000074305.9, exon 4 of 7) protein_coding-exon (ENSMUSG00000074305.9, exon 4 of 7) 136 ENSMUSG00000097111.1 ENSMUSG00000097111 ENSMUST00000181444 Peak1os antisense Interval_89559 chr2 22758504 22759001 + 0 NA intron (ENSMUSG00000085353.2, intron 1 of 1) lincRNA-intron (ENSMUSG00000085353.2, intron 1 of 1) -3220 ENSMUSG00000085353.2 ENSMUSG00000085353 ENSMUST00000169209 1700092C17Rik lincRNA Interval_67255 chr16 44849306 44849473 + 0 NA intron (ENSMUSG00000116911.1, intron 1 of 1) processed_pseudogene-intron (ENSMUSG00000116911.1, intron 1 of 1) 407 ENSMUSG00000116911.1 ENSMUSG00000116911 ENSMUST00000232485 Gm5964 processed_pseudogene Interval_10605 chr1 172161672 172162379 + 0 NA intron (ENSMUSG00000026554.15, intron 2 of 9) protein_coding-intron (ENSMUSG00000026554.15, intron 1 of 12) 13936 ENSMUSG00000026554.15 ENSMUSG00000026554 ENSMUST00000191891 Dcaf8 protein_coding Interval_53864 chr14 62924038 62925049 + 0 NA intron (ENSMUSG00000014547.10, intron 3 of 3) protein_coding-intron (ENSMUSG00000014547.10, intron 3 of 11) -49247 ENSMUSG00000114403.1 ENSMUSG00000114403 ENSMUST00000225378 Gm21021 processed_pseudogene Interval_106205 chr3 94601783 94602425 + 0 NA Intergenic Intergenic 2680 ENSMUSG00000062896.3 ENSMUSG00000062896 ENSMUST00000119898 Rpl31-ps11 processed_pseudogene Interval_68971 chr16 89839936 89840880 + 0 NA intron (ENSMUSG00000002489.16, intron 13 of 27) protein_coding-intron (ENSMUSG00000002489.16, intron 13 of 27) -45126 ENSMUSG00000002489.16 ENSMUSG00000002489 ENSMUST00000136760 Tiam1 protein_coding Interval_159006 chr8 88668221 88668679 + 0 NA intron (ENSMUSG00000055994.15, intron 4 of 12) protein_coding-intron (ENSMUSG00000055994.15, intron 4 of 12) 21066 ENSMUSG00000055994.15 ENSMUSG00000055994 ENSMUST00000109634 Nod2 protein_coding Interval_153479 chr7 145110526 145111077 + 0 NA Intergenic Intergenic -52195 ENSMUSG00000108967.1 ENSMUSG00000108967 ENSMUST00000207878 Gm45181 lincRNA Interval_112568 chr4 43277773 43278376 + 0 NA intron (ENSMUSG00000028457.18, intron 2 of 8) protein_coding-intron (ENSMUSG00000028457.18, intron 2 of 14) 10889 ENSMUSG00000028457.18 ENSMUSG00000028457 ENSMUST00000102953 Atp8b5 protein_coding Interval_148493 chr7 81725775 81726195 + 0 NA Intergenic Intergenic -16360 ENSMUSG00000109519.1 ENSMUSG00000109519 ENSMUST00000207607 Gm18806 processed_pseudogene Interval_146535 chr7 46710253 46711019 + 0 NA promoter-TSS (ENSMUSG00000006763.14) protein_coding-promoter-TSS (ENSMUSG00000006763.14) -1719 ENSMUSG00000006763.14 ENSMUSG00000006763 ENSMUST00000209780 Saal1 protein_coding Interval_40546 chr12 105636541 105637806 + 0 NA intron (ENSMUSG00000041341.10, intron 10 of 20) protein_coding-intron (ENSMUSG00000041341.10, intron 31 of 41) -8670 ENSMUSG00000087854.1 ENSMUSG00000087854 ENSMUST00000157229 Gm22790 rRNA Interval_107502 chr3 108164671 108165679 + 0 NA Intergenic Intergenic -1268 ENSMUSG00000085318.1 ENSMUSG00000085318 ENSMUST00000143109 Gm12524 lincRNA Interval_121883 chr5 9128623 9129260 + 0 NA TTS (ENSMUSG00000042508.16) protein_coding-TTS (ENSMUSG00000042508.16) -26792 ENSMUSG00000079659.5 ENSMUSG00000079659 ENSMUST00000200542 Tmem243 protein_coding Interval_38704 chr12 81205936 81206710 + 0 NA intron (ENSMUSG00000079055.10, intron 2 of 4) protein_coding-intron (ENSMUSG00000079055.10, intron 4 of 7) -21961 ENSMUSG00000098128.1 ENSMUSG00000098128 ENSMUST00000182077 Gm3693 antisense Interval_153084 chr7 141254766 141255436 + 0 NA promoter-TSS (ENSMUSG00000038611.17) protein_coding-promoter-TSS (ENSMUSG00000038611.17) 11322 ENSMUSG00000025498.15 ENSMUSG00000025498 ENSMUST00000146373 Irf7 protein_coding Interval_63698 chr15 102927228 102927729 + 0 NA exon (ENSMUSG00000001655.6, exon 2 of 2) protein_coding-exon (ENSMUSG00000001655.6, exon 2 of 2) 6375 ENSMUSG00000001655.6 ENSMUSG00000001655 ENSMUST00000001700 Hoxc13 protein_coding Interval_51290 chr14 25774373 25774709 + 0 NA Intergenic Intergenic 35340 ENSMUSG00000099057.1 ENSMUSG00000099057 ENSMUST00000184296 Gm27185 processed_pseudogene Interval_8852 chr1 151551186 151552196 + 0 NA promoter-TSS (ENSMUSG00000100357.1) lincRNA-promoter-TSS (ENSMUSG00000100357.1) -748 ENSMUSG00000100357.1 ENSMUSG00000100357 ENSMUST00000191460 Gm28181 lincRNA Interval_114044 chr4 62720886 62722241 + 0 NA intron (ENSMUSG00000085223.1, intron 1 of 3) lincRNA-intron (ENSMUSG00000085223.1, intron 1 of 3) 5974 ENSMUSG00000086139.1 ENSMUSG00000086139 ENSMUST00000143618 Gm11211 lincRNA Interval_32852 chr11 112025268 112025499 + 0 NA Intergenic Intergenic 18195 ENSMUSG00000081088.1 ENSMUSG00000081088 ENSMUST00000121830 Gm11679 processed_pseudogene Interval_99191 chr2 157923225 157923730 + 0 NA intron (ENSMUSG00000037843.6, intron 1 of 3) protein_coding-intron (ENSMUSG00000037843.6, intron 1 of 3) 8824 ENSMUSG00000037843.6 ENSMUSG00000037843 ENSMUST00000109523 Vstm2l protein_coding Interval_9197 chr1 155025990 155026254 + 0 NA intron (ENSMUSG00000101880.1, intron 2 of 3) lincRNA-intron (ENSMUSG00000101880.1, intron 2 of 3) -5617 ENSMUSG00000101433.1 ENSMUSG00000101433 ENSMUST00000191584 Gm29441 processed_pseudogene Interval_162622 chr9 6851455 6851691 + 0 NA Intergenic Intergenic 49730 ENSMUSG00000111464.1 ENSMUSG00000111464 ENSMUST00000213261 Gm48675 processed_pseudogene Interval_163912 chr9 28317920 28318680 + 0 NA intron (ENSMUSG00000062257.13, intron 1 of 7) protein_coding-intron (ENSMUSG00000062257.13, intron 1 of 7) 25552 ENSMUSG00000106021.1 ENSMUSG00000106021 ENSMUST00000199274 Gm44316 miRNA Interval_127313 chr5 102605334 102605791 + 0 NA intron (ENSMUSG00000057315.14, intron 2 of 2) protein_coding-intron (ENSMUSG00000057315.14, intron 1 of 8) -125566 ENSMUSG00000106586.1 ENSMUSG00000106586 ENSMUST00000200080 1700013M08Rik antisense Interval_67377 chr16 48233510 48236028 + 0 NA Intergenic Intergenic 16164 ENSMUSG00000048164.9 ENSMUSG00000048164 ENSMUST00000062591 Gm7204 processed_pseudogene Interval_67139 chr16 43860415 43860926 + 0 NA TTS (ENSMUSG00000022704.16) protein_coding-TTS (ENSMUSG00000022704.16) 20543 ENSMUSG00000022704.16 ENSMUSG00000022704 ENSMUST00000124674 Qtrt2 protein_coding Interval_146347 chr7 45447361 45449830 + 0 NA intron (ENSMUSG00000003865.16, intron 11 of 14) protein_coding-intron (ENSMUSG00000003865.16, intron 12 of 15) 9602 ENSMUSG00000076036.1 ENSMUSG00000076036 ENSMUST00000102082 Gm22133 miRNA Interval_5157 chr1 86106451 86106669 + 0 NA intron (ENSMUSG00000026228.6, intron 1 of 2) protein_coding-intron (ENSMUSG00000026228.6, intron 2 of 3) 4112 ENSMUSG00000026228.6 ENSMUSG00000026228 ENSMUST00000155077 Htr2b protein_coding Interval_113478 chr4 55280866 55282515 + 0 NA TTS (ENSMUSG00000081542.1) processed_pseudogene-TTS (ENSMUSG00000081542.1) 590 ENSMUSG00000081542.1 ENSMUSG00000081542 ENSMUST00000119620 Gm12512 processed_pseudogene Interval_122527 chr5 23604348 23604793 + 0 NA intron (ENSMUSG00000062604.11, intron 2 of 5) protein_coding-intron (ENSMUSG00000062604.11, intron 1 of 14) -62452 ENSMUSG00000062604.11 ENSMUSG00000062604 ENSMUST00000196592 Srpk2 protein_coding Interval_115350 chr4 97757252 97758840 + 0 NA promoter-TSS (ENSMUSG00000085710.1) processed_transcript-promoter-TSS (ENSMUSG00000085710.1) -657 ENSMUSG00000085710.1 ENSMUSG00000085710 ENSMUST00000149078 Gm12676 processed_transcript Interval_60521 chr15 74621015 74621227 + 0 NA exon (ENSMUSG00000022603.9, exon 12 of 27) protein_coding-exon (ENSMUSG00000022603.9, exon 12 of 27) -12893 ENSMUSG00000022603.9 ENSMUSG00000022603 ENSMUST00000175931 Mroh4 protein_coding Interval_75337 chr17 65940995 65942670 + 0 NA intron (ENSMUSG00000024098.6, intron 2 of 5) protein_coding-intron (ENSMUSG00000024098.6, intron 2 of 4) 9305 ENSMUSG00000024098.6 ENSMUSG00000024098 ENSMUST00000233855 Twsg1 protein_coding Interval_50710 chr14 18419687 18420024 + 0 NA Intergenic Intergenic -26020 ENSMUSG00000065858.1 ENSMUSG00000065858 ENSMUST00000083924 Gm22350 snRNA Interval_129467 chr5 120393842 120394136 + 0 NA Intergenic Intergenic -37710 ENSMUSG00000029595.9 ENSMUSG00000029595 ENSMUST00000031591 Lhx5 protein_coding Interval_50971 chr14 21418220 21418541 + 0 NA intron (ENSMUSG00000039197.10, intron 9 of 10) protein_coding-intron (ENSMUSG00000039197.10, intron 9 of 10) -32094 ENSMUSG00000088873.1 ENSMUSG00000088873 ENSMUST00000158248 Gm25864 snRNA Interval_109754 chr3 146611061 146612523 + 0 NA exon (ENSMUSG00000028186.14, exon 1 of 1) protein_coding-exon (ENSMUSG00000028186.14, exon 1 of 1) 3804 ENSMUSG00000028185.12 ENSMUSG00000028185 ENSMUST00000200633 Dnase2b protein_coding Interval_22154 chr11 6679897 6680906 + 0 NA Intergenic Intergenic -5423 ENSMUSG00000083075.1 ENSMUSG00000083075 ENSMUST00000121445 Gm11980 processed_pseudogene Interval_165942 chr9 54837400 54838166 + 0 NA Intergenic Intergenic -12501 ENSMUSG00000111686.1 ENSMUSG00000111686 ENSMUST00000213253 Rab7-ps1 processed_pseudogene Interval_129412 chr5 119835103 119835793 + 0 NA promoter-TSS (ENSMUSG00000018263.11) protein_coding-promoter-TSS (ENSMUSG00000018263.11) 2780 ENSMUSG00000018263.11 ENSMUSG00000018263 ENSMUST00000202504 Tbx5 protein_coding Interval_85074 chr19 22242695 22243407 + 0 NA intron (ENSMUSG00000052387.16, intron 1 of 24) protein_coding-intron (ENSMUSG00000052387.16, intron 1 of 24) -7433 ENSMUSG00000088558.1 ENSMUSG00000088558 ENSMUST00000157933 Gm22506 snoRNA Interval_47289 chr13 80781589 80781880 + 0 NA Intergenic Intergenic 103790 ENSMUSG00000089827.1 ENSMUSG00000089827 ENSMUST00000161006 1700023H06Rik processed_transcript Interval_132951 chr5 148928390 148929462 + 0 NA promoter-TSS (ENSMUSG00000041298.15) protein_coding-promoter-TSS (ENSMUSG00000041298.15) -261 ENSMUSG00000041298.15 ENSMUSG00000041298 ENSMUST00000152360 Katnal1 protein_coding Interval_143964 chr7 18648266 18648554 + 0 NA intron (ENSMUSG00000070796.11, intron 4 of 4) protein_coding-intron (ENSMUSG00000070796.11, intron 4 of 4) 8289 ENSMUSG00000070796.11 ENSMUSG00000070796 ENSMUST00000182933 Psg21 protein_coding Interval_20993 chr10 123091683 123092264 + 0 NA Intergenic Intergenic -61654 ENSMUSG00000034602.15 ENSMUSG00000034602 ENSMUST00000219203 Mon2 protein_coding Interval_168780 chr9 86990906 86992334 + 0 NA intron (ENSMUSG00000111874.1, intron 3 of 3) lincRNA-intron (ENSMUSG00000111874.1, intron 3 of 3) 14543 ENSMUSG00000111874.1 ENSMUSG00000111874 ENSMUST00000217543 Gm36539 lincRNA Interval_158096 chr8 78698439 78698700 + 0 NA exon (ENSMUSG00000031684.11, exon 9 of 12) protein_coding-exon (ENSMUSG00000031684.11, exon 9 of 12) 75976 ENSMUSG00000112190.1 ENSMUSG00000112190 ENSMUST00000218647 Gm47209 unitary_pseudogene Interval_87205 chr19 46868922 46870027 + 0 NA intron (ENSMUSG00000064105.13, intron 5 of 6) protein_coding-intron (ENSMUSG00000064105.13, intron 5 of 6) 3814 ENSMUSG00000064105.13 ENSMUSG00000064105 ENSMUST00000235671 Cnnm2 protein_coding Interval_29809 chr11 86982822 86984124 + 0 NA intron (ENSMUSG00000018427.8, intron 1 of 4) protein_coding-intron (ENSMUSG00000018427.8, intron 1 of 4) -11449 ENSMUSG00000018427.8 ENSMUSG00000018427 ENSMUST00000238921 Ypel2 protein_coding Interval_97011 chr2 130489959 130490719 + 0 NA intron (ENSMUSG00000027303.18, intron 1 of 11) protein_coding-intron (ENSMUSG00000027303.18, intron 1 of 20) -33656 ENSMUSG00000115955.1 ENSMUSG00000115955 ENSMUST00000229108 9530056E24Rik TEC Interval_25642 chr11 50369531 50370163 + 0 NA Intergenic Intergenic -11968 ENSMUSG00000076450.1 ENSMUSG00000076450 ENSMUST00000103251 Mir804 miRNA Interval_16488 chr10 63152549 63153967 + 0 NA intron (ENSMUSG00000020067.8, intron 6 of 19) protein_coding-intron (ENSMUSG00000020067.8, intron 6 of 19) -30574 ENSMUSG00000020067.8 ENSMUSG00000020067 ENSMUST00000218978 Mypn protein_coding Interval_117225 chr4 120746362 120748092 + 0 NA promoter-TSS (ENSMUSG00000028631.7) protein_coding-promoter-TSS (ENSMUSG00000028631.7) 1385 ENSMUSG00000028631.7 ENSMUSG00000028631 ENSMUST00000129478 Kcnq4 protein_coding Interval_29430 chr11 83964014 83964899 + 0 NA promoter-TSS (ENSMUSG00000034940.15) protein_coding-promoter-TSS (ENSMUSG00000034940.15) 18201 ENSMUSG00000020677.7 ENSMUSG00000020677 ENSMUST00000130982 Ddx52 protein_coding Interval_106946 chr3 102120702 102122308 + 0 NA intron (ENSMUSG00000027861.13, intron 5 of 11) protein_coding-intron (ENSMUSG00000027861.13, intron 5 of 10) -8433 ENSMUSG00000105342.1 ENSMUSG00000105342 ENSMUST00000196994 Gm43244 sense_intronic Interval_127974 chr5 109995581 109997293 + 0 NA promoter-TSS (ENSMUSG00000066613.14) protein_coding-promoter-TSS (ENSMUSG00000066613.14) -39 ENSMUSG00000097863.1 ENSMUSG00000097863 ENSMUST00000181488 1010001B22Rik lincRNA Interval_115126 chr4 91249589 91250415 + 0 NA TTS (ENSMUSG00000008489.18) protein_coding-TTS (ENSMUSG00000008489.18) 93320 ENSMUSG00000081876.1 ENSMUSG00000081876 ENSMUST00000119935 Gm12644 processed_pseudogene Interval_147441 chr7 67230715 67230899 + 0 NA TTS (ENSMUSG00000030557.17) protein_coding-TTS (ENSMUSG00000030557.17) 8191 ENSMUSG00000043831.12 ENSMUSG00000043831 ENSMUST00000208569 Lysmd4 protein_coding Interval_112135 chr4 34889136 34889378 + 0 NA Intergenic Intergenic -4531 ENSMUSG00000028298.10 ENSMUSG00000028298 ENSMUST00000108130 Cga protein_coding Interval_22279 chr11 8509105 8509837 + 0 NA intron (ENSMUSG00000020422.14, intron 16 of 30) protein_coding-intron (ENSMUSG00000020422.14, intron 16 of 30) -125618 ENSMUSG00000083553.1 ENSMUSG00000083553 ENSMUST00000117240 Gm11989 processed_pseudogene Interval_76518 chr17 80713800 80715241 + 0 NA intron (ENSMUSG00000024242.15, intron 1 of 1) protein_coding-intron (ENSMUSG00000024242.15, intron 1 of 33) -13611 ENSMUSG00000054957.5 ENSMUSG00000054957 ENSMUST00000068277 Gm9959 pseudogene Interval_130946 chr5 134197522 134197853 + 0 NA promoter-TSS (ENSMUSG00000015942.9) protein_coding-promoter-TSS (ENSMUSG00000015942.9) -330 ENSMUSG00000015942.9 ENSMUSG00000015942 ENSMUST00000152587 Gtf2ird2 protein_coding Interval_146138 chr7 44291287 44292008 + 0 NA Intergenic Intergenic 9240 ENSMUSG00000108512.1 ENSMUSG00000108512 ENSMUST00000206467 Gm7238 processed_pseudogene Interval_16689 chr10 67042407 67043457 + 0 NA intron (ENSMUSG00000019873.8, intron 2 of 8) protein_coding-intron (ENSMUSG00000019873.8, intron 2 of 7) -5610 ENSMUSG00000019873.8 ENSMUSG00000019873 ENSMUST00000219431 Reep3 protein_coding Interval_19339 chr10 97159967 97160522 + 0 NA Intergenic Intergenic 40126 ENSMUSG00000112892.1 ENSMUSG00000112892 ENSMUST00000220383 Gm8613 processed_pseudogene Interval_121627 chr5 4040331 4040787 + 0 NA intron (ENSMUSG00000040407.18, intron 27 of 47) protein_coding-intron (ENSMUSG00000040407.18, intron 27 of 47) 17144 ENSMUSG00000040407.18 ENSMUSG00000040407 ENSMUST00000196837 Akap9 protein_coding Interval_140442 chr6 118127113 118127310 + 0 NA promoter-TSS (ENSMUSG00000042042.14) protein_coding-promoter-TSS (ENSMUSG00000042042.14) -805 ENSMUSG00000042042.14 ENSMUSG00000042042 ENSMUST00000136265 Csgalnact2 protein_coding Interval_148518 chr7 82063307 82063650 + 0 NA Intergenic Intergenic -6909 ENSMUSG00000109145.1 ENSMUSG00000109145 ENSMUST00000208972 Gm20744 lincRNA Interval_119359 chr4 137141172 137141504 + 0 NA Intergenic Intergenic -23195 ENSMUSG00000087417.1 ENSMUSG00000087417 ENSMUST00000154285 Gm13001 lincRNA Interval_50304 chr14 11737302 11737509 + 0 NA intron (ENSMUSG00000021745.14, intron 2 of 3) protein_coding-intron (ENSMUSG00000021745.14, intron 2 of 29) -30538 ENSMUSG00000114310.1 ENSMUSG00000114310 ENSMUST00000225152 Gm48602 TEC Interval_6203 chr1 101710904 101711310 + 0 NA Intergenic Intergenic 43436 ENSMUSG00000100065.1 ENSMUSG00000100065 ENSMUST00000189423 Gm18969 processed_pseudogene Interval_143446 chr7 6860636 6861172 + 0 NA intron (ENSMUSG00000051527.11, intron 2 of 7) protein_coding-intron (ENSMUSG00000051527.11, intron 2 of 7) -20783 ENSMUSG00000092875.2 ENSMUSG00000092875 ENSMUST00000175134 Gm22649 misc_RNA Interval_92285 chr2 58281557 58282927 + 0 NA intron (ENSMUSG00000026834.13, intron 5 of 7) protein_coding-intron (ENSMUSG00000026834.13, intron 6 of 8) 5463 ENSMUSG00000086995.1 ENSMUSG00000086995 ENSMUST00000131189 Gm13544 antisense Interval_39636 chr12 91713528 91715231 + 0 NA promoter-TSS (ENSMUSG00000020961.15) protein_coding-promoter-TSS (ENSMUSG00000020961.15) -28266 ENSMUSG00000090722.8 ENSMUSG00000090722 ENSMUST00000167777 Gm8378 sense_intronic Interval_160351 chr8 108692340 108692934 + 0 NA intron (ENSMUSG00000038872.10, intron 6 of 15) protein_coding-intron (ENSMUSG00000038872.10, intron 6 of 15) -44956 ENSMUSG00000104292.1 ENSMUSG00000104292 ENSMUST00000191614 Gm38042 TEC Interval_69604 chr16 94568928 94571322 + 0 NA promoter-TSS (ENSMUSG00000022897.15) protein_coding-promoter-TSS (ENSMUSG00000022897.15) -782 ENSMUSG00000022897.15 ENSMUSG00000022897 ENSMUST00000134383 Dyrk1a protein_coding Interval_39261 chr12 86289424 86290091 + 0 NA exon (ENSMUSG00000021254.9, exon 9 of 9) protein_coding-exon (ENSMUSG00000021254.9, exon 9 of 9) 16249 ENSMUSG00000097488.1 ENSMUSG00000097488 ENSMUST00000181495 4732487G21Rik lincRNA Interval_170852 chr9 111226514 111227665 + 0 NA Intergenic Intergenic 3547 ENSMUSG00000032498.9 ENSMUSG00000032498 ENSMUST00000134316 Mlh1 protein_coding Interval_89688 chr2 24607766 24609279 + 0 NA promoter-TSS (ENSMUSG00000004113.18) protein_coding-promoter-TSS (ENSMUSG00000004113.18) 7157 ENSMUSG00000088571.1 ENSMUSG00000088571 ENSMUST00000157946 Gm25455 misc_RNA Interval_157406 chr8 70164946 70167372 + 0 NA exon (ENSMUSG00000079033.10, exon 5 of 8) protein_coding-exon (ENSMUSG00000079033.10, exon 5 of 8) -6249 ENSMUSG00000002342.17 ENSMUSG00000002342 ENSMUST00000143543 Tmem161a protein_coding Interval_58902 chr15 39850709 39850974 + 0 NA intron (ENSMUSG00000022304.13, intron 1 of 9) protein_coding-intron (ENSMUSG00000022304.13, intron 1 of 9) 53796 ENSMUSG00000087695.1 ENSMUSG00000087695 ENSMUST00000147378 Gm16291 antisense Interval_128715 chr5 114882328 114882633 + 0 NA intron (ENSMUSG00000029564.12, intron 11 of 11) protein_coding-intron (ENSMUSG00000029564.12, intron 11 of 11) -14455 ENSMUSG00000080707.1 ENSMUSG00000080707 ENSMUST00000119930 Gm13823 processed_pseudogene Interval_32674 chr11 109569063 109570006 + 0 NA intron (ENSMUSG00000020604.13, intron 11 of 11) protein_coding-intron (ENSMUSG00000020604.13, intron 13 of 13) 42433 ENSMUSG00000041895.15 ENSMUSG00000041895 ENSMUST00000153738 Wipi1 protein_coding Interval_24599 chr11 35067764 35068580 + 0 NA Intergenic Intergenic -103457 ENSMUSG00000056427.10 ENSMUSG00000056427 ENSMUST00000124438 Slit3 protein_coding Interval_77989 chr18 6466537 6467127 + 0 NA intron (ENSMUSG00000024240.13, intron 1 of 13) protein_coding-intron (ENSMUSG00000024240.13, intron 1 of 13) -23323 ENSMUSG00000101320.1 ENSMUSG00000101320 ENSMUST00000189675 Gm28529 antisense Interval_171615 chr9 119566033 119566706 + 0 NA intron (ENSMUSG00000032511.17, intron 1 of 27) protein_coding-intron (ENSMUSG00000032511.17, intron 1 of 27) -2866 ENSMUSG00000032511.17 ENSMUSG00000032511 ENSMUST00000138934 Scn5a protein_coding Interval_148313 chr7 80444550 80446470 + 0 NA Intergenic Intergenic 15314 ENSMUSG00000030528.12 ENSMUSG00000030528 ENSMUST00000205584 Blm protein_coding Interval_56691 chr14 121405219 121405950 + 0 NA Intergenic Intergenic -19628 ENSMUSG00000115666.1 ENSMUSG00000115666 ENSMUST00000228299 Gm49031 processed_pseudogene Interval_97561 chr2 139873370 139874884 + 0 NA intron (ENSMUSG00000039033.11, intron 12 of 13) protein_coding-intron (ENSMUSG00000039033.11, intron 12 of 13) 10830 ENSMUSG00000084207.1 ENSMUSG00000084207 ENSMUST00000120773 Gm14070 processed_pseudogene Interval_150079 chr7 105694267 105694917 + 0 NA exon (ENSMUSG00000030882.19, exon 22 of 44) protein_coding-exon (ENSMUSG00000030882.19, exon 22 of 44) -4025 ENSMUSG00000081911.1 ENSMUSG00000081911 ENSMUST00000118658 Mrps36-ps2 processed_pseudogene Interval_29518 chr11 84625440 84625744 + 0 NA Intergenic Intergenic 94840 ENSMUSG00000085044.1 ENSMUSG00000085044 ENSMUST00000150735 1700109G15Rik lincRNA Interval_78525 chr18 14331234 14331802 + 0 NA promoter-TSS (ENSMUSG00000117365.1) lincRNA-promoter-TSS (ENSMUSG00000117365.1) 158 ENSMUSG00000117365.1 ENSMUSG00000117365 ENSMUST00000234914 Gm29992 lincRNA Interval_106146 chr3 93672342 93673251 + 0 NA intron (ENSMUSG00000094084.2, intron 1 of 1) protein_coding-intron (ENSMUSG00000094084.2, intron 1 of 1) 3514 ENSMUSG00000094084.2 ENSMUSG00000094084 ENSMUST00000181541 Tdpoz1 protein_coding Interval_143806 chr7 16432850 16433401 + 0 NA intron (ENSMUSG00000059273.9, intron 13 of 13) protein_coding-intron (ENSMUSG00000059273.9, intron 13 of 13) -16504 ENSMUSG00000109647.1 ENSMUSG00000109647 ENSMUST00000210059 Gm45510 antisense Interval_143633 chr7 13427416 13427927 + 0 NA Intergenic Intergenic 12621 ENSMUSG00000107945.1 ENSMUSG00000107945 ENSMUST00000205097 Rpl7a-ps14 processed_pseudogene Interval_35393 chr12 21289474 21290034 + 0 NA intron (ENSMUSG00000054309.9, intron 3 of 6) protein_coding-intron (ENSMUSG00000054309.9, intron 1 of 17) 1827 ENSMUSG00000070166.1 ENSMUSG00000070166 ENSMUST00000093657 Gm25821 snoRNA Interval_151040 chr7 118111574 118112025 + 0 NA intron (ENSMUSG00000008683.16, intron 2 of 3) protein_coding-intron (ENSMUSG00000008683.16, intron 3 of 4) 3457 ENSMUSG00000008683.16 ENSMUSG00000008683 ENSMUST00000128482 Rps15a protein_coding Interval_13772 chr10 21961304 21961675 + 0 NA intron (ENSMUSG00000019970.15, intron 1 of 2) protein_coding-intron (ENSMUSG00000019970.15, intron 2 of 13) -17183 ENSMUSG00000019970.15 ENSMUSG00000019970 ENSMUST00000135195 Sgk1 protein_coding Interval_44828 chr13 48953594 48955507 + 0 NA intron (ENSMUSG00000038014.7, intron 1 of 17) protein_coding-intron (ENSMUSG00000038014.7, intron 1 of 17) 13467 ENSMUSG00000038014.7 ENSMUSG00000038014 ENSMUST00000060805 Fam120a protein_coding Interval_136317 chr6 52969679 52970032 + 0 NA intron (ENSMUSG00000063568.11, intron 1 of 4) protein_coding-intron (ENSMUSG00000063568.11, intron 1 of 4) 40677 ENSMUSG00000089209.1 ENSMUSG00000089209 ENSMUST00000158584 Gm26215 scaRNA Interval_22106 chr11 6371690 6373466 + 0 NA Intergenic Intergenic -24151 ENSMUSG00000041164.15 ENSMUSG00000041164 ENSMUST00000124588 Zmiz2 protein_coding Interval_142017 chr6 136558517 136559490 + 0 NA intron (ENSMUSG00000030213.12, intron 2 of 2) protein_coding-intron (ENSMUSG00000030213.12, intron 1 of 14) -39972 ENSMUSG00000107702.1 ENSMUSG00000107702 ENSMUST00000204157 Gm44140 bidirectional_promoter_lncRNA Interval_89649 chr2 23998271 24000128 + 0 NA Intergenic Intergenic 49880 ENSMUSG00000026986.14 ENSMUSG00000026986 ENSMUST00000114497 Hnmt protein_coding Interval_41042 chr12 110770768 110771147 + 0 NA intron (ENSMUSG00000037957.14, intron 1 of 4) protein_coding-intron (ENSMUSG00000037957.14, intron 1 of 2) 32748 ENSMUSG00000037957.14 ENSMUSG00000037957 ENSMUST00000194118 Wdr20 protein_coding Interval_55188 chr14 79142397 79144318 + 0 NA promoter-TSS (ENSMUSG00000058997.8) protein_coding-promoter-TSS (ENSMUSG00000058997.8) -564 ENSMUSG00000058997.8 ENSMUSG00000058997 ENSMUST00000228904 Vwa8 protein_coding Interval_79748 chr18 34887004 34887949 + 0 NA Intergenic Intergenic 26269 ENSMUSG00000038418.7 ENSMUSG00000038418 ENSMUST00000165033 Egr1 protein_coding Interval_17119 chr10 71432826 71433556 + 0 NA TTS (ENSMUSG00000060733.13) protein_coding-TTS (ENSMUSG00000060733.13) -49890 ENSMUSG00000112608.1 ENSMUSG00000112608 ENSMUST00000217831 Gm46233 processed_pseudogene Interval_136742 chr6 58906485 58907616 + 0 NA promoter-TSS (ENSMUSG00000055430.4) protein_coding-promoter-TSS (ENSMUSG00000055430.4) -377 ENSMUSG00000055430.4 ENSMUSG00000055430 ENSMUST00000205101 Nap1l5 protein_coding Interval_29038 chr11 80019954 80020170 + 0 NA intron (ENSMUSG00000017548.15, intron 8 of 14) protein_coding-intron (ENSMUSG00000017548.15, intron 9 of 15) 26956 ENSMUSG00000017548.15 ENSMUSG00000017548 ENSMUST00000144188 Suz12 protein_coding Interval_118097 chr4 128935257 128935782 + 0 NA promoter-TSS (ENSMUSG00000085961.1) antisense-promoter-TSS (ENSMUSG00000085961.1) -486 ENSMUSG00000085961.1 ENSMUSG00000085961 ENSMUST00000154515 Gm15904 antisense Interval_79713 chr18 34684330 34684670 + 0 NA Intergenic Intergenic 35887 ENSMUSG00000024366.8 ENSMUSG00000024366 ENSMUST00000025224 Gfra3 protein_coding Interval_110124 chr3 153500612 153501773 + 0 NA intron (ENSMUSG00000052544.9, intron 1 of 2) protein_coding-intron (ENSMUSG00000052544.9, intron 1 of 2) 8550 ENSMUSG00000052544.9 ENSMUSG00000052544 ENSMUST00000198775 St6galnac3 protein_coding Interval_105993 chr3 90497827 90498026 + 0 NA Intergenic Intergenic -6933 ENSMUSG00000001018.15 ENSMUSG00000001018 ENSMUST00000107351 Snapin protein_coding Interval_65492 chr16 22772103 22772729 + 0 NA Intergenic Intergenic 39161 ENSMUSG00000033501.5 ENSMUSG00000033501 ENSMUST00000040592 Crygs protein_coding Interval_4676 chr1 76312113 76312539 + 0 NA Intergenic Intergenic -108366 ENSMUSG00000100827.1 ENSMUSG00000100827 ENSMUST00000185857 Gm29069 lincRNA Interval_105069 chr3 80958695 80959080 + 0 NA Intergenic Intergenic -4073 ENSMUSG00000105092.1 ENSMUSG00000105092 ENSMUST00000200360 Gm42468 lincRNA Interval_125170 chr5 65057542 65058331 + 0 NA intron (ENSMUSG00000037913.12, intron 6 of 7) protein_coding-intron (ENSMUSG00000037913.12, intron 6 of 7) 34196 ENSMUSG00000037913.12 ENSMUSG00000037913 ENSMUST00000203117 Tmem156 protein_coding Interval_89623 chr2 23488973 23489719 + 0 NA Intergenic Intergenic -3585 ENSMUSG00000102704.1 ENSMUSG00000102704 ENSMUST00000192063 Gm38309 TEC Interval_92306 chr2 58554978 58555409 + 0 NA intron (ENSMUSG00000026836.15, intron 1 of 11) protein_coding-intron (ENSMUSG00000026836.15, intron 1 of 10) -38921 ENSMUSG00000026836.15 ENSMUSG00000026836 ENSMUST00000126407 Acvr1 protein_coding Interval_132648 chr5 146938940 146939613 + 0 NA Intergenic Intergenic -9381 ENSMUSG00000016503.18 ENSMUSG00000016503 ENSMUST00000133296 Gtf3a protein_coding Interval_17473 chr10 77120462 77120741 + 0 NA intron (ENSMUSG00000001435.15, intron 2 of 41) protein_coding-intron (ENSMUSG00000001435.15, intron 2 of 41) -16499 ENSMUSG00000112612.1 ENSMUSG00000112612 ENSMUST00000218871 Gm7775 processed_pseudogene Interval_92834 chr2 66123898 66125430 + 0 NA promoter-TSS (ENSMUSG00000100197.1) lincRNA-promoter-TSS (ENSMUSG00000100197.1) -653 ENSMUSG00000100197.1 ENSMUSG00000100197 ENSMUST00000188152 Gm28638 lincRNA Interval_48810 chr13 103577469 103578074 + 0 NA Intergenic Intergenic -64155 ENSMUSG00000096642.1 ENSMUSG00000096642 ENSMUST00000179897 Gm24870 snRNA Interval_141740 chr6 134151245 134152236 + 0 NA intron (ENSMUSG00000030199.16, intron 2 of 4) protein_coding-intron (ENSMUSG00000030199.16, intron 2 of 7) 20267 ENSMUSG00000091438.1 ENSMUSG00000091438 ENSMUST00000164616 Gm17088 antisense Interval_96665 chr2 127000412 127001604 + 0 NA Intergenic Intergenic -7746 ENSMUSG00000001998.15 ENSMUSG00000001998 ENSMUST00000142740 Ap4e1 protein_coding Interval_45259 chr13 53584662 53584969 + 0 NA Intergenic Intergenic -51558 ENSMUSG00000113834.1 ENSMUSG00000113834 ENSMUST00000223156 Gm34022 lincRNA Interval_94052 chr2 82888366 82889192 + 0 NA Intergenic Intergenic -54855 ENSMUSG00000075249.12 ENSMUSG00000075249 ENSMUST00000132967 Fsip2 protein_coding Interval_110750 chr4 8037443 8037711 + 0 NA Intergenic Intergenic -81043 ENSMUSG00000083068.1 ENSMUSG00000083068 ENSMUST00000120050 Gm11800 processed_pseudogene Interval_43207 chr13 25193140 25193481 + 0 NA intron (ENSMUSG00000035910.15, intron 2 of 3) protein_coding-intron (ENSMUSG00000035910.15, intron 8 of 9) 5856 ENSMUSG00000035910.15 ENSMUSG00000035910 ENSMUST00000160363 Dcdc2a protein_coding Interval_23346 chr11 21625334 21626099 + 0 NA intron (ENSMUSG00000020319.9, intron 1 of 8) protein_coding-intron (ENSMUSG00000020319.9, intron 1 of 17) -53782 ENSMUSG00000020321.16 ENSMUSG00000020321 ENSMUST00000125302 Mdh1 protein_coding Interval_49281 chr13 110148785 110149091 + 0 NA intron (ENSMUSG00000021700.10, intron 3 of 4) protein_coding-intron (ENSMUSG00000021700.10, intron 3 of 4) 131212 ENSMUSG00000021700.10 ENSMUSG00000021700 ENSMUST00000226040 Rab3c protein_coding Interval_71403 chr17 23555696 23556385 + 0 NA promoter-TSS (ENSMUSG00000067882.14) polymorphic_pseudogene-promoter-TSS (ENSMUSG00000067882.14) -336 ENSMUSG00000067882.14 ENSMUSG00000067882 ENSMUST00000088673 Casp16 polymorphic_pseudogene Interval_35586 chr12 25071069 25071363 + 0 NA Intergenic Intergenic 6524 ENSMUSG00000114148.1 ENSMUSG00000114148 ENSMUST00000220747 Gm47701 lincRNA Interval_62012 chr15 85877370 85877616 + 0 NA TTS (ENSMUSG00000022385.11) protein_coding-TTS (ENSMUSG00000022385.11) 1597 ENSMUSG00000116435.1 ENSMUSG00000116435 ENSMUST00000229871 Gm49548 bidirectional_promoter_lncRNA Interval_102586 chr3 28007661 28008586 + 0 NA intron (ENSMUSG00000027695.16, intron 1 of 26) protein_coding-intron (ENSMUSG00000027695.16, intron 1 of 25) -71067 ENSMUSG00000027695.16 ENSMUSG00000027695 ENSMUST00000126594 Pld1 protein_coding Interval_36029 chr12 33429244 33430175 + 0 NA promoter-TSS (ENSMUSG00000020561.8) protein_coding-promoter-TSS (ENSMUSG00000020561.8) 74 ENSMUSG00000020561.8 ENSMUSG00000020561 ENSMUST00000219758 Twistnb protein_coding Interval_55670 chr14 98647916 98648317 + 0 NA Intergenic Intergenic 23926 ENSMUSG00000096444.1 ENSMUSG00000096444 ENSMUST00000180098 Gm26139 snRNA Interval_168954 chr9 89621958 89623641 + 0 NA exon (ENSMUSG00000039313.14, exon 1 of 4) protein_coding-exon (ENSMUSG00000039313.14, exon 1 of 4) -15273 ENSMUSG00000111274.1 ENSMUSG00000111274 ENSMUST00000214211 Gm47409 lincRNA Interval_26585 chr11 59052548 59052783 + 0 NA exon (ENSMUSG00000061462.18, exon 54 of 90) protein_coding-exon (ENSMUSG00000061462.18, exon 54 of 90) 49755 ENSMUSG00000072902.4 ENSMUSG00000072902 ENSMUST00000101162 Gm10435 antisense Interval_113871 chr4 59491240 59491661 + 0 NA intron (ENSMUSG00000028382.15, intron 7 of 11) protein_coding-intron (ENSMUSG00000028382.15, intron 7 of 13) -41297 ENSMUSG00000080831.1 ENSMUSG00000080831 ENSMUST00000119529 Gm12529 processed_pseudogene Interval_22911 chr11 17292167 17292360 + 0 NA Intergenic Intergenic 6156 ENSMUSG00000082797.3 ENSMUSG00000082797 ENSMUST00000117065 Gm12015 processed_pseudogene Interval_88456 chr2 5282874 5285309 + 0 NA TTS (ENSMUSG00000080820.1) processed_pseudogene-TTS (ENSMUSG00000080820.1) 441 ENSMUSG00000080820.1 ENSMUSG00000080820 ENSMUST00000117204 Gm13197 processed_pseudogene Interval_30285 chr11 92890001 92890397 + 0 NA Intergenic Intergenic -20098 ENSMUSG00000087810.1 ENSMUSG00000087810 ENSMUST00000157185 Gm25113 snoRNA Interval_111047 chr4 11485261 11486475 + 0 NA promoter-TSS (ENSMUSG00000040720.15) protein_coding-promoter-TSS (ENSMUSG00000040720.15) -175 ENSMUSG00000040720.15 ENSMUSG00000040720 ENSMUST00000108307 Virma protein_coding Interval_3987 chr1 65526279 65526886 + 0 NA Intergenic Intergenic -2507 ENSMUSG00000099819.1 ENSMUSG00000099819 ENSMUST00000189087 Gm28728 processed_pseudogene Interval_80108 chr18 37680170 37681038 + 0 NA exon (ENSMUSG00000103037.1, exon 1 of 4) protein_coding-exon (ENSMUSG00000103037.1, exon 1 of 4) 347 ENSMUSG00000103037.1 ENSMUSG00000103037 ENSMUST00000195624 Pcdhgb1 protein_coding Interval_84080 chr19 7094158 7096002 + 0 NA exon (ENSMUSG00000047787.8, exon 2 of 2) protein_coding-exon (ENSMUSG00000047787.8, exon 2 of 2) -6659 ENSMUSG00000117901.1 ENSMUSG00000117901 ENSMUST00000236559 AC109619.1 antisense Interval_108076 chr3 121390018 121390306 + 0 NA Intergenic Intergenic -9483 ENSMUSG00000106455.1 ENSMUSG00000106455 ENSMUST00000197896 Gm5711 processed_pseudogene Interval_35087 chr12 17231548 17232014 + 0 NA Intergenic Intergenic -1831 ENSMUSG00000113368.1 ENSMUSG00000113368 ENSMUST00000223362 Gm10054 processed_pseudogene Interval_162226 chr8 126160226 126160496 + 0 NA intron (ENSMUSG00000057060.8, intron 1 of 5) protein_coding-intron (ENSMUSG00000057060.8, intron 1 of 5) 21366 ENSMUSG00000057060.8 ENSMUSG00000057060 ENSMUST00000108759 Slc35f3 protein_coding Interval_104083 chr3 58453200 58453754 + 0 NA intron (ENSMUSG00000027806.9, intron 3 of 4) protein_coding-intron (ENSMUSG00000027806.9, intron 2 of 3) 37599 ENSMUSG00000027806.9 ENSMUSG00000027806 ENSMUST00000196049 Tsc22d2 protein_coding Interval_111011 chr4 11199901 11201314 + 0 NA intron (ENSMUSG00000040738.10, intron 27 of 27) protein_coding-intron (ENSMUSG00000028212.16, intron 9 of 11) 9253 ENSMUSG00000028212.16 ENSMUSG00000028212 ENSMUST00000149075 Ccne2 protein_coding Interval_31064 chr11 97953110 97953382 + 0 NA intron (ENSMUSG00000017417.14, intron 6 of 7) protein_coding-intron (ENSMUSG00000017417.14, intron 7 of 13) -11506 ENSMUSG00000093013.1 ENSMUSG00000093013 ENSMUST00000175272 Gm22461 miRNA Interval_78072 chr18 7665896 7666756 + 0 NA Intergenic Intergenic 26400 ENSMUSG00000117542.1 ENSMUSG00000117542 ENSMUST00000234387 Gm18763 processed_pseudogene Interval_38950 chr12 84053006 84054270 + 0 NA exon (ENSMUSG00000021228.15, exon 2 of 4) protein_coding-exon (ENSMUSG00000021228.15, exon 2 of 4) 169 ENSMUSG00000097762.1 ENSMUSG00000097762 ENSMUST00000180751 4732463B04Rik antisense Interval_55270 chr14 79842971 79843575 + 0 NA intron (ENSMUSG00000097927.2, intron 1 of 4) lincRNA-intron (ENSMUSG00000097927.2, intron 1 of 4) 25903 ENSMUSG00000095959.2 ENSMUSG00000095959 ENSMUST00000179430 Gm10845 lincRNA Interval_111442 chr4 21688456 21689861 + 0 NA Intergenic Intergenic -3377 ENSMUSG00000040478.14 ENSMUSG00000040478 ENSMUST00000139568 Prdm13 protein_coding Interval_129479 chr5 120464310 120465308 + 0 NA intron (ENSMUSG00000029596.13, intron 1 of 7) protein_coding-intron (ENSMUSG00000029596.13, intron 2 of 8) 2551 ENSMUSG00000029596.13 ENSMUSG00000029596 ENSMUST00000132916 Sdsl protein_coding Interval_46876 chr13 72979026 72979259 + 0 NA Intergenic Intergenic -162379 ENSMUSG00000113082.1 ENSMUSG00000113082 ENSMUST00000223149 D730050B12Rik lincRNA Interval_130503 chr5 128450483 128451225 + 0 NA Intergenic Intergenic 1950 ENSMUSG00000104727.1 ENSMUSG00000104727 ENSMUST00000199898 Gm42500 lincRNA Interval_8473 chr1 139742271 139742556 + 0 NA intron (ENSMUSG00000070594.10, intron 5 of 14) protein_coding-intron (ENSMUSG00000070594.10, intron 5 of 13) 38830 ENSMUSG00000070594.10 ENSMUSG00000070594 ENSMUST00000027612 Gm4788 protein_coding Interval_107662 chr3 109651743 109652291 + 0 NA intron (ENSMUSG00000033721.16, intron 3 of 6) protein_coding-intron (ENSMUSG00000033721.16, intron 22 of 26) 4493 ENSMUSG00000033721.16 ENSMUSG00000033721 ENSMUST00000148866 Vav3 protein_coding Interval_78204 chr18 10108611 10108831 + 0 NA TTS (ENSMUSG00000024290.9) protein_coding-TTS (ENSMUSG00000024290.9) 3657 ENSMUSG00000024290.9 ENSMUSG00000024290 ENSMUST00000235075 Rock1 protein_coding Interval_126257 chr5 84621679 84621901 + 0 NA Intergenic Intergenic 3084 ENSMUSG00000105658.1 ENSMUSG00000105658 ENSMUST00000200676 Gm43531 processed_pseudogene Interval_142808 chr6 145910718 145911157 + 0 NA Intergenic Intergenic -20704 ENSMUSG00000030255.13 ENSMUSG00000030255 ENSMUST00000111701 Sspn protein_coding Interval_69182 chr16 91188423 91190835 + 0 NA Intergenic Intergenic -14295 ENSMUSG00000116713.1 ENSMUSG00000116713 ENSMUST00000231233 Gm49613 processed_pseudogene Interval_16391 chr10 62691167 62693081 + 0 NA intron (ENSMUSG00000036923.12, intron 1 of 3) protein_coding-intron (ENSMUSG00000036923.12, intron 2 of 3) 9616 ENSMUSG00000105329.1 ENSMUSG00000105329 ENSMUST00000200383 Mir7215 miRNA Interval_172165 chrX 8136754 8137818 + 0 NA Intergenic Intergenic -4441 ENSMUSG00000031166.13 ENSMUSG00000031166 ENSMUST00000130050 Wdr13 protein_coding Interval_39891 chr12 99382546 99382772 + 0 NA intron (ENSMUSG00000033713.12, intron 2 of 5) protein_coding-intron (ENSMUSG00000033713.12, intron 2 of 5) -5411 ENSMUSG00000113610.1 ENSMUSG00000113610 ENSMUST00000223488 Gm47132 TEC Interval_165021 chr9 43982539 43982781 + 0 NA Intergenic Intergenic -3183 ENSMUSG00000111637.1 ENSMUSG00000111637 ENSMUST00000214985 Gm10688 lincRNA Interval_24958 chr11 42044578 42045694 + 0 NA Intergenic Intergenic -128513 ENSMUSG00000020436.17 ENSMUSG00000020436 ENSMUST00000109290 Gabrg2 protein_coding Interval_171083 chr9 114447403 114449414 + 0 NA intron (ENSMUSG00000045594.10, intron 9 of 14) protein_coding-intron (ENSMUSG00000045594.10, intron 10 of 15) 47300 ENSMUSG00000045594.10 ENSMUSG00000045594 ENSMUST00000217583 Glb1 protein_coding Interval_162997 chr9 14357186 14357624 + 0 NA exon (ENSMUSG00000037419.9, exon 2 of 2) protein_coding-exon (ENSMUSG00000037419.9, exon 2 of 2) 21793 ENSMUSG00000111555.1 ENSMUSG00000111555 ENSMUST00000216728 Gm47326 lincRNA Interval_24841 chr11 40211000 40211404 + 0 NA intron (ENSMUSG00000085301.1, intron 5 of 7) lincRNA-intron (ENSMUSG00000085301.1, intron 5 of 7) 203008 ENSMUSG00000085301.1 ENSMUSG00000085301 ENSMUST00000130945 Gm12132 lincRNA Interval_43296 chr13 28844174 28845076 + 0 NA intron (ENSMUSG00000085936.7, intron 2 of 7) processed_transcript-intron (ENSMUSG00000085936.7, intron 1 of 5) 7750 ENSMUSG00000082861.3 ENSMUSG00000082861 ENSMUST00000118838 Gm11362 processed_pseudogene Interval_35764 chr12 29089529 29090411 + 0 NA Intergenic Intergenic 16767 ENSMUSG00000113544.1 ENSMUSG00000113544 ENSMUST00000222186 4833405L11Rik lincRNA Interval_23277 chr11 21116860 21117502 + 0 NA intron (ENSMUSG00000020134.13, intron 1 of 6) protein_coding-intron (ENSMUSG00000020134.13, intron 1 of 6) 17647 ENSMUSG00000084362.1 ENSMUSG00000084362 ENSMUST00000121233 2610024D14Rik processed_pseudogene Interval_127068 chr5 100054771 100055808 + 0 NA intron (ENSMUSG00000029326.13, intron 1 of 2) protein_coding-intron (ENSMUSG00000029326.13, intron 1 of 6) 1702 ENSMUSG00000089491.1 ENSMUSG00000089491 ENSMUST00000158866 Gm26363 snoRNA Interval_101404 chr2 181085137 181085549 + 0 NA TTS (ENSMUSG00000016346.17) protein_coding-TTS (ENSMUSG00000016346.17) 24413 ENSMUSG00000016346.17 ENSMUSG00000016346 ENSMUST00000140789 Kcnq2 protein_coding Interval_159294 chr8 92889114 92889282 + 0 NA intron (ENSMUSG00000033192.5, intron 7 of 11) protein_coding-intron (ENSMUSG00000033192.5, intron 9 of 13) -12209 ENSMUSG00000078144.4 ENSMUSG00000078144 ENSMUST00000104947 Capns2 protein_coding Interval_136555 chr6 55519546 55521071 + 0 NA Intergenic Intergenic -13198 ENSMUSG00000104746.1 ENSMUSG00000104746 ENSMUST00000196358 Gm44352 miRNA Interval_142106 chr6 137169254 137170864 + 0 NA promoter-TSS (ENSMUSG00000030222.13) protein_coding-promoter-TSS (ENSMUSG00000030222.13) -23130 ENSMUSG00000107567.1 ENSMUSG00000107567 ENSMUST00000203679 4930480K02Rik TEC Interval_73110 chr17 34881644 34882107 + 0 NA promoter-TSS (ENSMUSG00000024371.14) protein_coding-promoter-TSS (ENSMUSG00000024371.14) 167 ENSMUSG00000092511.7 ENSMUSG00000092511 ENSMUST00000129891 Gm20547 protein_coding Interval_25714 chr11 51031523 51031821 + 0 NA TTS (ENSMUSG00000059397.2) protein_coding-TTS (ENSMUSG00000059397.2) -16437 ENSMUSG00000057890.5 ENSMUSG00000057890 ENSMUST00000073543 Olfr1375 protein_coding Interval_154349 chr8 14905438 14907113 + 0 NA Intergenic Intergenic 17271 ENSMUSG00000026317.7 ENSMUSG00000026317 ENSMUST00000128839 Cln8 protein_coding Interval_22636 chr11 12423757 12424849 + 0 NA intron (ENSMUSG00000020173.17, intron 1 of 11) protein_coding-intron (ENSMUSG00000020173.17, intron 1 of 14) -12159 ENSMUSG00000020173.17 ENSMUSG00000020173 ENSMUST00000146067 Cobl protein_coding Interval_69018 chr16 90153601 90153829 + 0 NA Intergenic Intergenic -9465 ENSMUSG00000116553.1 ENSMUSG00000116553 ENSMUST00000231626 Gm7307 processed_pseudogene Interval_105140 chr3 82384305 82385357 + 0 NA intron (ENSMUSG00000033900.13, intron 13 of 13) protein_coding-intron (ENSMUSG00000033900.13, intron 13 of 13) 4758 ENSMUSG00000033900.13 ENSMUSG00000033900 ENSMUST00000195793 Map9 protein_coding Interval_73756 chr17 43265055 43266445 + 0 NA Intergenic Intergenic -4579 ENSMUSG00000041293.5 ENSMUSG00000041293 ENSMUST00000047399 Adgrf1 protein_coding Interval_90427 chr2 30383325 30383526 + 0 NA intron (ENSMUSG00000026858.18, intron 2 of 2) protein_coding-intron (ENSMUSG00000026858.18, intron 14 of 15) 1481 ENSMUSG00000026858.18 ENSMUSG00000026858 ENSMUST00000176517 Miga2 protein_coding Interval_11609 chr1 183263788 183264978 + 0 NA Intergenic Intergenic 5191 ENSMUSG00000118599.1 ENSMUSG00000118599 ENSMUST00000239174 AC122792.1 unitary_pseudogene Interval_44892 chr13 49407852 49408046 + 0 NA Intergenic Intergenic -13329 ENSMUSG00000021385.10 ENSMUSG00000021385 ENSMUST00000021817 Ippk protein_coding Interval_127146 chr5 100607569 100607773 + 0 NA Intergenic Intergenic -14915 ENSMUSG00000104993.1 ENSMUSG00000104993 ENSMUST00000197922 Gm43510 processed_pseudogene Interval_136002 chr6 49367123 49368308 + 0 NA promoter-TSS (ENSMUSG00000047115.15) protein_coding-promoter-TSS (ENSMUSG00000047115.15) -19764 ENSMUSG00000047115.15 ENSMUSG00000047115 ENSMUST00000203182 Fam221a protein_coding Interval_45097 chr13 52139506 52140039 + 0 NA Intergenic Intergenic -40639 ENSMUSG00000113399.1 ENSMUSG00000113399 ENSMUST00000222876 Gm48199 lincRNA Interval_121993 chr5 13279365 13279571 + 0 NA intron (ENSMUSG00000028883.17, intron 2 of 2) protein_coding-intron (ENSMUSG00000028883.17, intron 2 of 8) -120109 ENSMUSG00000028883.17 ENSMUSG00000028883 ENSMUST00000200073 Sema3a protein_coding Interval_47269 chr13 80262314 80262731 + 0 NA Intergenic Intergenic 101194 ENSMUSG00000114462.1 ENSMUSG00000114462 ENSMUST00000226097 Gm8371 processed_pseudogene Interval_127811 chr5 107986301 107987844 + 0 NA promoter-TSS (ENSMUSG00000029270.10) protein_coding-promoter-TSS (ENSMUSG00000029270.10) -14074 ENSMUSG00000029270.10 ENSMUSG00000029270 ENSMUST00000153172 Dipk1a protein_coding Interval_23920 chr11 28339211 28340246 + 0 NA promoter-TSS (ENSMUSG00000032889.7) processed_pseudogene-promoter-TSS (ENSMUSG00000032889.7) 86 ENSMUSG00000032889.7 ENSMUSG00000032889 ENSMUST00000042595 Gm6685 processed_pseudogene Interval_143402 chr7 6415204 6415854 + 0 NA intron (ENSMUSG00000093536.7, intron 1 of 3) protein_coding-intron (ENSMUSG00000045929.8, intron 1 of 4) 5252 ENSMUSG00000045929.8 ENSMUSG00000045929 ENSMUST00000054781 Gm20715 protein_coding Interval_99446 chr2 161185119 161185356 + 0 NA intron (ENSMUSG00000067745.4, intron 2 of 2) lincRNA-intron (ENSMUSG00000067745.4, intron 2 of 2) 6173 ENSMUSG00000067745.4 ENSMUSG00000067745 ENSMUST00000131401 Gm14243 lincRNA Interval_75725 chr17 70881179 70883269 + 0 NA intron (ENSMUSG00000097154.2, intron 1 of 2) lincRNA-intron (ENSMUSG00000097154.2, intron 1 of 2) -6289 ENSMUSG00000097154.2 ENSMUSG00000097154 ENSMUST00000180468 Gm26510 lincRNA Interval_14371 chr10 31691893 31692119 + 0 NA intron (ENSMUSG00000069670.8, intron 6 of 6) protein_coding-intron (ENSMUSG00000069670.8, intron 6 of 6) 52848 ENSMUSG00000098038.1 ENSMUSG00000098038 ENSMUST00000183069 Gm8793 processed_pseudogene Interval_70819 chr17 15077213 15077441 + 0 NA intron (ENSMUSG00000036552.19, intron 7 of 7) protein_coding-intron (ENSMUSG00000036552.19, intron 7 of 7) 24485 ENSMUSG00000036552.19 ENSMUSG00000036552 ENSMUST00000186130 Ermard protein_coding Interval_111978 chr4 32933810 32934079 + 0 NA intron (ENSMUSG00000040183.13, intron 1 of 15) protein_coding-intron (ENSMUSG00000040183.13, intron 1 of 14) -30944 ENSMUSG00000094344.1 ENSMUSG00000094344 ENSMUST00000180255 Gm11942 processed_pseudogene Interval_83168 chr18 82503933 82505131 + 0 NA intron (ENSMUSG00000041607.17, intron 2 of 5) protein_coding-intron (ENSMUSG00000041607.17, intron 2 of 6) 19489 ENSMUSG00000061684.6 ENSMUSG00000061684 ENSMUST00000130005 Rpl21-ps8 processed_pseudogene Interval_135500 chr6 39680417 39680719 + 0 NA intron (ENSMUSG00000002413.15, intron 2 of 17) protein_coding-intron (ENSMUSG00000002413.15, intron 2 of 21) -15489 ENSMUSG00000002413.15 ENSMUSG00000002413 ENSMUST00000169647 Braf protein_coding Interval_150936 chr7 116461966 116462630 + 0 NA Intergenic Intergenic 18723 ENSMUSG00000108461.1 ENSMUSG00000108461 ENSMUST00000206201 AV356131 bidirectional_promoter_lncRNA Interval_64829 chr16 16235895 16237540 + 0 NA intron (ENSMUSG00000041957.15, intron 4 of 5) protein_coding-intron (ENSMUSG00000041957.15, intron 4 of 12) 23399 ENSMUSG00000041957.15 ENSMUSG00000041957 ENSMUST00000039408 Pkp2 protein_coding Interval_148328 chr7 80534386 80535692 + 0 NA promoter-TSS (ENSMUSG00000030528.12) protein_coding-promoter-TSS (ENSMUSG00000030528.12) 27252 ENSMUSG00000091989.1 ENSMUSG00000091989 ENSMUST00000166096 Ndufab1-ps processed_pseudogene Interval_16892 chr10 69556264 69556571 + 0 NA intron (ENSMUSG00000069601.14, intron 1 of 17) protein_coding-intron (ENSMUSG00000069601.14, intron 1 of 16) 9944 ENSMUSG00000112729.1 ENSMUSG00000112729 ENSMUST00000220152 Gm46231 processed_pseudogene Interval_66140 chr16 31918084 31918934 + 0 NA Intergenic Intergenic -6480 ENSMUSG00000083890.1 ENSMUSG00000083890 ENSMUST00000120250 Gm15703 processed_pseudogene Interval_73390 chr17 36937439 36938208 + 0 NA Intergenic Intergenic -7255 ENSMUSG00000036492.12 ENSMUSG00000036492 ENSMUST00000174669 Rnf39 protein_coding Interval_28857 chr11 78803670 78803938 + 0 NA Intergenic Intergenic -20583 ENSMUSG00000088748.1 ENSMUSG00000088748 ENSMUST00000158123 Gm23219 snRNA Interval_138643 chr6 90675078 90676138 + 0 NA intron (ENSMUSG00000034312.15, intron 6 of 8) protein_coding-intron (ENSMUSG00000034312.15, intron 6 of 13) 5912 ENSMUSG00000093052.2 ENSMUSG00000093052 ENSMUST00000175311 Gm24816 miRNA Interval_108858 chr3 132753688 132754165 + 0 NA intron (ENSMUSG00000028030.12, intron 22 of 25) protein_coding-intron (ENSMUSG00000028030.12, intron 22 of 23) -13481 ENSMUSG00000105719.1 ENSMUSG00000105719 ENSMUST00000200026 Gm42872 TEC Interval_158243 chr8 80370927 80371300 + 0 NA Intergenic Intergenic -122668 ENSMUSG00000051839.7 ENSMUSG00000051839 ENSMUST00000063359 Gypa protein_coding Interval_66414 chr16 33734389 33735043 + 0 NA intron (ENSMUSG00000075254.12, intron 8 of 16) protein_coding-intron (ENSMUSG00000075254.12, intron 8 of 16) 50346 ENSMUSG00000075254.12 ENSMUSG00000075254 ENSMUST00000146518 Heg1 protein_coding Interval_18759 chr10 90081383 90081849 + 0 NA intron (ENSMUSG00000058589.14, intron 8 of 25) protein_coding-intron (ENSMUSG00000058589.14, intron 8 of 17) 53201 ENSMUSG00000112140.1 ENSMUSG00000112140 ENSMUST00000217774 Gm5780 processed_pseudogene Interval_71211 chr17 21187542 21187918 + 0 NA Intergenic Intergenic -11222 ENSMUSG00000095963.1 ENSMUSG00000095963 ENSMUST00000167648 Gm7742 processed_pseudogene Interval_40553 chr12 105695792 105696397 + 0 NA intron (ENSMUSG00000044715.7, intron 1 of 1) protein_coding-intron (ENSMUSG00000044715.7, intron 1 of 2) 10693 ENSMUSG00000044715.7 ENSMUSG00000044715 ENSMUST00000222841 Gskip protein_coding Interval_162049 chr8 124732696 124733287 + 0 NA TTS (ENSMUSG00000031982.5) protein_coding-TTS (ENSMUSG00000031982.5) 4588 ENSMUSG00000031982.5 ENSMUSG00000031982 ENSMUST00000212959 Arv1 protein_coding Interval_104207 chr3 60569299 60569855 + 0 NA intron (ENSMUSG00000027763.13, intron 2 of 3) protein_coding-intron (ENSMUSG00000027763.13, intron 2 of 9) 33826 ENSMUSG00000104235.1 ENSMUSG00000104235 ENSMUST00000193609 Gm37589 TEC Interval_151249 chr7 120180708 120180961 + 0 NA intron (ENSMUSG00000030909.6, intron 1 of 1) protein_coding-intron (ENSMUSG00000030909.6, intron 1 of 1) 6976 ENSMUSG00000030909.6 ENSMUSG00000030909 ENSMUST00000033201 Anks4b protein_coding Interval_32628 chr11 109279533 109279887 + 0 NA intron (ENSMUSG00000020599.13, intron 2 of 16) protein_coding-intron (ENSMUSG00000020599.13, intron 2 of 18) -32745 ENSMUSG00000020599.13 ENSMUSG00000020599 ENSMUST00000106704 Rgs9 protein_coding Interval_26963 chr11 61892223 61892477 + 0 NA exon (ENSMUSG00000047804.15, exon 10 of 10) protein_coding-exon (ENSMUSG00000047804.15, exon 10 of 10) -24292 ENSMUSG00000072847.4 ENSMUSG00000072847 ENSMUST00000148413 A530017D24Rik lincRNA Interval_84248 chr19 9013323 9013664 + 0 NA exon (ENSMUSG00000069833.13, exon 5 of 5) protein_coding-exon (ENSMUSG00000069833.13, exon 5 of 5) 24209 ENSMUSG00000069833.13 ENSMUSG00000069833 ENSMUST00000237033 Ahnak protein_coding Interval_83930 chr19 5662993 5664126 + 0 NA promoter-TSS (ENSMUSG00000056917.13) protein_coding-promoter-TSS (ENSMUSG00000056917.13) -8722 ENSMUSG00000056917.13 ENSMUSG00000056917 ENSMUST00000236827 Sipa1 protein_coding Interval_116498 chr4 114697720 114697911 + 0 NA Intergenic Intergenic 17011 ENSMUSG00000085870.1 ENSMUSG00000085870 ENSMUST00000146346 Gm12829 lincRNA Interval_115630 chr4 101488017 101488284 + 0 NA Intergenic Intergenic -8481 ENSMUSG00000028528.17 ENSMUSG00000028528 ENSMUST00000106933 Dnajc6 protein_coding Interval_63541 chr15 101918721 101919673 + 0 NA intron (ENSMUSG00000059668.6, intron 8 of 8) protein_coding-intron (ENSMUSG00000059668.6, intron 8 of 8) 5538 ENSMUSG00000059668.6 ENSMUSG00000059668 ENSMUST00000023797 Krt4 protein_coding Interval_110193 chr3 154146244 154146415 + 0 NA intron (ENSMUSG00000028360.10, intron 1 of 21) protein_coding-intron (ENSMUSG00000028360.10, intron 1 of 21) 7232 ENSMUSG00000104622.1 ENSMUSG00000104622 ENSMUST00000199871 Gm42541 TEC Interval_86261 chr19 38223536 38224698 + 0 NA promoter-TSS (ENSMUSG00000054237.6) protein_coding-promoter-TSS (ENSMUSG00000054237.6) 21 ENSMUSG00000054237.6 ENSMUSG00000054237 ENSMUST00000238154 Fra10ac1 protein_coding Interval_154726 chr8 22877621 22877823 + 0 NA intron (ENSMUSG00000031540.14, intron 2 of 17) protein_coding-intron (ENSMUSG00000031540.14, intron 3 of 17) 4133 ENSMUSG00000109652.1 ENSMUSG00000109652 ENSMUST00000210028 Gm45555 TEC Interval_16025 chr10 60185546 60186963 + 0 NA exon (ENSMUSG00000057337.13, exon 2 of 2) protein_coding-exon (ENSMUSG00000057337.13, exon 2 of 2) 7985 ENSMUSG00000057337.13 ENSMUSG00000057337 ENSMUST00000167915 Chst3 protein_coding Interval_59087 chr15 43434439 43434658 + 0 NA intron (ENSMUSG00000072592.2, intron 2 of 2) lincRNA-intron (ENSMUSG00000072592.2, intron 2 of 2) 42488 ENSMUSG00000072592.2 ENSMUSG00000072592 ENSMUST00000100683 Gm10373 lincRNA Interval_115904 chr4 106150549 106151549 + 0 NA Intergenic Intergenic -13271 ENSMUSG00000081189.1 ENSMUSG00000081189 ENSMUST00000121815 Hspd1-ps4 processed_pseudogene Interval_31100 chr11 98137677 98138293 + 0 NA intron (ENSMUSG00000020883.18, intron 1 of 7) protein_coding-intron (ENSMUSG00000020883.18, intron 1 of 14) 12418 ENSMUSG00000020883.18 ENSMUSG00000020883 ENSMUST00000148473 Fbxl20 protein_coding Interval_98320 chr2 150998019 150999680 + 0 NA intron (ENSMUSG00000068115.13, intron 1 of 4) protein_coding-intron (ENSMUSG00000068115.13, intron 1 of 23) 6667 ENSMUSG00000082375.1 ENSMUSG00000082375 ENSMUST00000120236 Gm14141 processed_pseudogene Interval_88905 chr2 12461643 12461848 + 0 NA Intergenic Intergenic -39719 ENSMUSG00000083547.2 ENSMUSG00000083547 ENSMUST00000117101 Gm13321 processed_pseudogene Interval_151108 chr7 118583658 118584859 + 0 NA intron (ENSMUSG00000042246.5, intron 1 of 2) protein_coding-intron (ENSMUSG00000042246.5, intron 1 of 15) 428 ENSMUSG00000042246.5 ENSMUSG00000042246 ENSMUST00000139693 Tmc7 protein_coding Interval_10948 chr1 177456782 177456988 + 0 NA Intergenic Intergenic -3297 ENSMUSG00000102432.1 ENSMUSG00000102432 ENSMUST00000192282 Gm29856 processed_transcript Interval_20402 chr10 117361019 117361257 + 0 NA promoter-TSS (ENSMUSG00000055531.12) protein_coding-promoter-TSS (ENSMUSG00000055531.12) 15790 ENSMUSG00000055531.12 ENSMUSG00000055531 ENSMUST00000175924 Cpsf6 protein_coding Interval_34365 chr12 3629634 3630155 + 0 NA intron (ENSMUSG00000071454.13, intron 5 of 17) protein_coding-intron (ENSMUSG00000071454.13, intron 5 of 17) 57424 ENSMUSG00000071454.13 ENSMUSG00000071454 ENSMUST00000174293 Dtnb protein_coding Interval_170342 chr9 107296265 107297271 + 0 NA promoter-TSS (ENSMUSG00000032578.7) protein_coding-promoter-TSS (ENSMUSG00000032578.7) -2387 ENSMUSG00000032578.7 ENSMUSG00000032578 ENSMUST00000171568 Cish protein_coding Interval_95272 chr2 105427608 105428620 + 0 NA Intergenic Intergenic -32766 ENSMUSG00000005973.6 ENSMUSG00000005973 ENSMUST00000127019 Rcn1 protein_coding Interval_59428 chr15 53087510 53087746 + 0 NA intron (ENSMUSG00000061731.9, intron 6 of 9) protein_coding-intron (ENSMUSG00000061731.9, intron 7 of 10) 20240 ENSMUSG00000061731.9 ENSMUSG00000061731 ENSMUST00000140798 Ext1 protein_coding Interval_131502 chr5 137607995 137609123 + 0 NA promoter-TSS (ENSMUSG00000029718.14) protein_coding-promoter-TSS (ENSMUSG00000029718.14) 1915 ENSMUSG00000029718.14 ENSMUSG00000029718 ENSMUST00000137210 Pcolce protein_coding Interval_171695 chr9 120202418 120203570 + 0 NA intron (ENSMUSG00000111360.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000111360.1, intron 1 of 2) 20430 ENSMUSG00000104494.1 ENSMUSG00000104494 ENSMUST00000193250 Gm37111 TEC Interval_72746 chr17 31898836 31899585 + 0 NA promoter-TSS (ENSMUSG00000117562.2) lincRNA-promoter-TSS (ENSMUSG00000117562.2) -32 ENSMUSG00000117562.2 ENSMUSG00000117562 ENSMUST00000234078 Gm50000 lincRNA Interval_163548 chr9 22026512 22026708 + 0 NA promoter-TSS (ENSMUSG00000003410.8) protein_coding-promoter-TSS (ENSMUSG00000003410.8) 23804 ENSMUSG00000003402.14 ENSMUSG00000003402 ENSMUST00000214565 Prkcsh protein_coding Interval_91283 chr2 37382866 37383177 + 0 NA exon (ENSMUSG00000075376.10, exon 11 of 20) protein_coding-exon (ENSMUSG00000075376.10, exon 11 of 20) 7176 ENSMUSG00000075376.10 ENSMUSG00000075376 ENSMUST00000204690 Rc3h2 protein_coding Interval_136539 chr6 55354514 55355262 + 0 NA Intergenic Intergenic 18456 ENSMUSG00000004655.5 ENSMUSG00000004655 ENSMUST00000004774 Aqp1 protein_coding Interval_167377 chr9 67955010 67956544 + 0 NA exon (ENSMUSG00000035284.10, exon 66 of 85) protein_coding-exon (ENSMUSG00000035284.10, exon 66 of 85) 69937 ENSMUSG00000111841.1 ENSMUSG00000111841 ENSMUST00000216827 Gm20745 lincRNA Interval_132369 chr5 144520031 144521269 + 0 NA Intergenic Intergenic -25252 ENSMUSG00000059991.7 ENSMUSG00000059991 ENSMUST00000071782 Nptx2 protein_coding Interval_3964 chr1 65118704 65119198 + 0 NA intron (ENSMUSG00000044816.10, intron 2 of 6) protein_coding-intron (ENSMUSG00000044816.10, intron 3 of 7) 607 ENSMUSG00000100846.1 ENSMUSG00000100846 ENSMUST00000144760 Gm28845 protein_coding Interval_84347 chr19 10266286 10269083 + 0 NA intron (ENSMUSG00000035735.10, intron 5 of 19) protein_coding-intron (ENSMUSG00000035735.10, intron 5 of 19) -10813 ENSMUSG00000035735.10 ENSMUSG00000035735 ENSMUST00000156361 Dagla protein_coding Interval_112896 chr4 45869009 45870820 + 0 NA intron (ENSMUSG00000028327.14, intron 9 of 18) protein_coding-intron (ENSMUSG00000028327.14, intron 8 of 17) -4297 ENSMUSG00000028327.14 ENSMUSG00000028327 ENSMUST00000165478 Stra6l protein_coding Interval_19145 chr10 95094573 95095447 + 0 NA Intergenic Intergenic -21369 ENSMUSG00000112677.1 ENSMUSG00000112677 ENSMUST00000219913 Gm48868 TEC Interval_123152 chr5 30149687 30150020 + 0 NA promoter-TSS (ENSMUSG00000025745.12) protein_coding-promoter-TSS (ENSMUSG00000025745.12) -310 ENSMUSG00000025745.12 ENSMUSG00000025745 ENSMUST00000196156 Hadha protein_coding Interval_123060 chr5 29321395 29322146 + 0 NA intron (ENSMUSG00000010721.15, intron 4 of 16) protein_coding-intron (ENSMUSG00000010721.15, intron 5 of 16) 15076 ENSMUSG00000093302.1 ENSMUSG00000093302 ENSMUST00000175561 Gm23801 miRNA Interval_47819 chr13 93498439 93500180 + 0 NA exon (ENSMUSG00000021690.10, exon 1 of 11) protein_coding-exon (ENSMUSG00000021690.10, exon 1 of 11) 428 ENSMUSG00000021690.10 ENSMUSG00000021690 ENSMUST00000220513 Jmy protein_coding Interval_166822 chr9 63031072 63031637 + 0 NA Intergenic Intergenic 3794 ENSMUSG00000064855.1 ENSMUSG00000064855 ENSMUST00000082921 Gm24526 snRNA Interval_158959 chr8 88252735 88253054 + 0 NA intron (ENSMUSG00000036779.12, intron 3 of 4) protein_coding-intron (ENSMUSG00000036779.12, intron 10 of 11) 922 ENSMUSG00000036779.12 ENSMUSG00000036779 ENSMUST00000154115 Tent4b protein_coding Interval_166484 chr9 59964550 59966743 + 0 NA Intergenic Intergenic -3875 ENSMUSG00000084847.7 ENSMUSG00000084847 ENSMUST00000133523 Gm15507 lincRNA Interval_93436 chr2 73048666 73049293 + 0 NA Intergenic Intergenic -62263 ENSMUSG00000079286.1 ENSMUSG00000079286 ENSMUST00000112062 Gm11084 protein_coding Interval_14433 chr10 33652956 33653835 + 0 NA intron (ENSMUSG00000090087.1, intron 3 of 4) antisense-intron (ENSMUSG00000090087.1, intron 3 of 4) -28776 ENSMUSG00000019785.14 ENSMUSG00000019785 ENSMUST00000160299 Clvs2 protein_coding Interval_69716 chr16 95751175 95751588 + 0 NA Intergenic Intergenic -2919 ENSMUSG00000117167.1 ENSMUSG00000117167 ENSMUST00000233819 Gm6599 processed_pseudogene Interval_153048 chr7 141051065 141051782 + 0 NA promoter-TSS (ENSMUSG00000109703.1) transcribed_processed_pseudogene-promoter-TSS (ENSMUSG00000109703.1) -166 ENSMUSG00000109703.1 ENSMUSG00000109703 ENSMUST00000210199 Gm45299 transcribed_processed_pseudogene Interval_68986 chr16 89952651 89953041 + 0 NA intron (ENSMUSG00000002489.16, intron 2 of 27) protein_coding-intron (ENSMUSG00000002489.16, intron 2 of 27) -137137 ENSMUSG00000116536.1 ENSMUSG00000116536 ENSMUST00000232386 Gm2805 processed_pseudogene Interval_123370 chr5 31926151 31926771 + 0 NA promoter-TSS (ENSMUSG00000107140.1) TEC-promoter-TSS (ENSMUSG00000107140.1) -236 ENSMUSG00000107140.1 ENSMUSG00000107140 ENSMUST00000202862 Gm43811 TEC Interval_137303 chr6 71201939 71202378 + 0 NA intron (ENSMUSG00000054422.7, intron 2 of 3) protein_coding-intron (ENSMUSG00000054422.7, intron 2 of 3) 2331 ENSMUSG00000054422.7 ENSMUSG00000054422 ENSMUST00000067492 Fabp1 protein_coding Interval_137354 chr6 71631430 71633602 + 0 NA exon (ENSMUSG00000053470.13, exon 2 of 27) protein_coding-exon (ENSMUSG00000053470.13, exon 2 of 27) 474 ENSMUSG00000053470.13 ENSMUSG00000053470 ENSMUST00000206597 Kdm3a protein_coding Interval_30803 chr11 96570173 96571096 + 0 NA intron (ENSMUSG00000057058.16, intron 4 of 7) protein_coding-intron (ENSMUSG00000057058.16, intron 4 of 11) 86852 ENSMUSG00000057058.16 ENSMUSG00000057058 ENSMUST00000123814 Skap1 protein_coding Interval_68331 chr16 73353996 73354865 + 0 NA intron (ENSMUSG00000116976.1, intron 3 of 3) processed_transcript-intron (ENSMUSG00000116976.1, intron 1 of 4) 68529 ENSMUSG00000064830.1 ENSMUSG00000064830 ENSMUST00000082896 Gm25699 snRNA Interval_55371 chr14 85953153 85953650 + 0 NA Intergenic Intergenic -219522 ENSMUSG00000115217.1 ENSMUSG00000115217 ENSMUST00000227116 Gm32729 lincRNA Interval_6790 chr1 119485968 119488383 + 0 NA intron (ENSMUSG00000004451.14, intron 1 of 1) protein_coding-intron (ENSMUSG00000004451.14, intron 1 of 4) -12302 ENSMUSG00000101437.1 ENSMUSG00000101437 ENSMUST00000190805 Gm29454 processed_pseudogene Interval_78052 chr18 7523723 7524194 + 0 NA intron (ENSMUSG00000057440.8, intron 2 of 2) protein_coding-intron (ENSMUSG00000057440.8, intron 2 of 16) -25029 ENSMUSG00000117556.1 ENSMUSG00000117556 ENSMUST00000234527 Gm18948 processed_pseudogene Interval_26466 chr11 58018448 58019048 + 0 NA intron (ENSMUSG00000037331.15, intron 1 of 18) protein_coding-intron (ENSMUSG00000037331.15, intron 1 of 18) 9684 ENSMUSG00000037331.15 ENSMUSG00000037331 ENSMUST00000140500 Larp1 protein_coding Interval_172917 chrX 53774445 53776864 + 0 NA exon (ENSMUSG00000059334.6, exon 1 of 1) protein_coding-exon (ENSMUSG00000059334.6, exon 1 of 1) 740 ENSMUSG00000059334.6 ENSMUSG00000059334 ENSMUST00000071711 Zfp36l3 protein_coding Interval_105461 chr3 86804012 86804352 + 0 NA intron (ENSMUSG00000028078.14, intron 10 of 15) protein_coding-intron (ENSMUSG00000028078.14, intron 10 of 15) -25529 ENSMUSG00000104108.1 ENSMUSG00000104108 ENSMUST00000194490 Gm37876 antisense Interval_96091 chr2 119709726 119710273 + 0 NA promoter-TSS (ENSMUSG00000027304.9) protein_coding-promoter-TSS (ENSMUSG00000027304.9) -997 ENSMUSG00000027304.9 ENSMUSG00000027304 ENSMUST00000126984 Rtf1 protein_coding Interval_132998 chr5 149183775 149185102 + 0 NA promoter-TSS (ENSMUSG00000041264.16) protein_coding-promoter-TSS (ENSMUSG00000041264.16) 51 ENSMUSG00000066551.12 ENSMUSG00000066551 ENSMUST00000123645 Hmgb1 protein_coding Interval_46036 chr13 60471856 60472127 + 0 NA intron (ENSMUSG00000114566.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000114566.1, intron 1 of 2) 9307 ENSMUSG00000114566.1 ENSMUSG00000114566 ENSMUST00000225097 Gm48500 lincRNA Interval_58996 chr15 41508022 41508284 + 0 NA intron (ENSMUSG00000022307.16, intron 1 of 15) protein_coding-intron (ENSMUSG00000022307.16, intron 1 of 15) -264995 ENSMUSG00000116178.1 ENSMUSG00000116178 ENSMUST00000229823 Gm49529 processed_pseudogene Interval_13486 chr10 18584078 18584627 + 0 NA exon (ENSMUSG00000019852.7, exon 34 of 34) protein_coding-exon (ENSMUSG00000019852.7, exon 34 of 34) -18397 ENSMUSG00000111173.1 ENSMUSG00000111173 ENSMUST00000215943 Gm48297 processed_pseudogene Interval_52221 chr14 40790480 40791873 + 0 NA Intergenic Intergenic 43949 ENSMUSG00000114933.1 ENSMUSG00000114933 ENSMUST00000225171 Gm48040 processed_pseudogene Interval_127622 chr5 105849330 105849654 + 0 NA Intergenic Intergenic 14210 ENSMUSG00000094708.1 ENSMUSG00000094708 ENSMUST00000180167 Gm10359 processed_pseudogene Interval_110858 chr4 9056018 9056215 + 0 NA Intergenic Intergenic 114857 ENSMUSG00000083786.1 ENSMUSG00000083786 ENSMUST00000119493 Rps18-ps2 processed_pseudogene Interval_67788 chr16 57191013 57191602 + 0 NA intron (ENSMUSG00000022749.8, intron 10 of 18) protein_coding-intron (ENSMUSG00000022749.8, intron 10 of 17) 9865 ENSMUSG00000022749.8 ENSMUSG00000022749 ENSMUST00000227359 Tbc1d23 protein_coding Interval_132237 chr5 143517319 143518626 + 0 NA promoter-TSS (ENSMUSG00000001847.14) protein_coding-promoter-TSS (ENSMUSG00000001847.14) 210 ENSMUSG00000001847.14 ENSMUSG00000001847 ENSMUST00000131513 Rac1 protein_coding Interval_139447 chr6 100234522 100235256 + 0 NA intron (ENSMUSG00000072872.3, intron 1 of 1) protein_coding-intron (ENSMUSG00000072872.3, intron 2 of 4) -13243 ENSMUSG00000108269.1 ENSMUSG00000108269 ENSMUST00000203798 Gm18422 transcribed_processed_pseudogene Interval_165533 chr9 49080555 49081867 + 0 NA promoter-TSS (ENSMUSG00000032268.13) protein_coding-promoter-TSS (ENSMUSG00000032268.13) -21517 ENSMUSG00000032268.13 ENSMUSG00000032268 ENSMUST00000170426 Tmprss5 protein_coding Interval_116794 chr4 117323574 117325442 + 0 NA intron (ENSMUSG00000028677.19, intron 2 of 2) protein_coding-intron (ENSMUSG00000028677.19, intron 2 of 14) 28364 ENSMUSG00000085749.1 ENSMUSG00000085749 ENSMUST00000139618 Gm12843 antisense Interval_62203 chr15 88784619 88785424 + 0 NA TTS (ENSMUSG00000034333.15) protein_coding-TTS (ENSMUSG00000034333.15) 33261 ENSMUSG00000034333.15 ENSMUSG00000034333 ENSMUST00000160975 Zbed4 protein_coding Interval_98183 chr2 149557264 149557511 + 0 NA Intergenic Intergenic 8898 ENSMUSG00000089270.1 ENSMUSG00000089270 ENSMUST00000158645 Gm24551 snoRNA Interval_24108 chr11 30369796 30370127 + 0 NA Intergenic Intergenic -101786 ENSMUSG00000020315.18 ENSMUSG00000020315 ENSMUST00000149117 Sptbn1 protein_coding Interval_86554 chr19 41663376 41664723 + 0 NA intron (ENSMUSG00000025020.11, intron 3 of 11) protein_coding-intron (ENSMUSG00000025020.11, intron 4 of 36) 75398 ENSMUSG00000098286.1 ENSMUSG00000098286 ENSMUST00000183602 Mir8091 miRNA Interval_90814 chr2 32763210 32763549 + 0 NA TTS (ENSMUSG00000039021.15) protein_coding-TTS (ENSMUSG00000039021.15) 6134 ENSMUSG00000009563.16 ENSMUSG00000009563 ENSMUST00000149987 Tor2a protein_coding Interval_54607 chr14 71188980 71189201 + 0 NA Intergenic Intergenic -62183 ENSMUSG00000115139.1 ENSMUSG00000115139 ENSMUST00000226131 Gm4251 lincRNA Interval_42135 chr13 9093222 9094892 + 0 NA promoter-TSS (ENSMUSG00000033499.14) protein_coding-promoter-TSS (ENSMUSG00000033499.14) -15248 ENSMUSG00000088442.1 ENSMUSG00000088442 ENSMUST00000157817 Gm23553 misc_RNA Interval_107473 chr3 107952941 107953958 + 0 NA promoter-TSS (ENSMUSG00000089664.2) unprocessed_pseudogene-promoter-TSS (ENSMUSG00000089664.2) -328 ENSMUSG00000089664.2 ENSMUSG00000089664 ENSMUST00000121684 Gm12494 unprocessed_pseudogene Interval_89145 chr2 17335365 17335603 + 0 NA Intergenic Intergenic 55524 ENSMUSG00000053702.16 ENSMUSG00000053702 ENSMUST00000130725 Nebl protein_coding Interval_142311 chr6 140583220 140584164 + 0 NA intron (ENSMUSG00000030231.11, intron 11 of 16) protein_coding-intron (ENSMUSG00000030231.11, intron 25 of 30) 20124 ENSMUSG00000030231.11 ENSMUSG00000030231 ENSMUST00000204528 Plekha5 protein_coding Interval_108748 chr3 131020870 131021448 + 0 NA Intergenic Intergenic 5211 ENSMUSG00000104859.1 ENSMUSG00000104859 ENSMUST00000197848 A430072C10Rik TEC Interval_23372 chr11 21988248 21989046 + 0 NA Intergenic Intergenic 13063 ENSMUSG00000005917.15 ENSMUSG00000005917 ENSMUST00000147486 Otx1 protein_coding Interval_49958 chr13 118908907 118909214 + 0 NA Intergenic Intergenic -50646 ENSMUSG00000114868.1 ENSMUSG00000114868 ENSMUST00000224309 Gm47335 processed_pseudogene Interval_65547 chr16 23232813 23234010 + 0 NA intron (ENSMUSG00000022885.16, intron 1 of 7) protein_coding-intron (ENSMUSG00000022885.16, intron 1 of 7) 7390 ENSMUSG00000022885.16 ENSMUSG00000022885 ENSMUST00000115335 St6gal1 protein_coding Interval_168012 chr9 75398984 75399496 + 0 NA intron (ENSMUSG00000042688.16, intron 1 of 2) protein_coding-intron (ENSMUSG00000042688.16, intron 1 of 5) -1633 ENSMUSG00000042688.16 ENSMUSG00000042688 ENSMUST00000172665 Mapk6 protein_coding Interval_20899 chr10 121853210 121854108 + 0 NA exon (ENSMUSG00000020121.15, exon 8 of 22) protein_coding-exon (ENSMUSG00000020121.15, exon 8 of 22) -21601 ENSMUSG00000112596.1 ENSMUSG00000112596 ENSMUST00000218664 Gm48804 TEC Interval_66375 chr16 33467360 33468149 + 0 NA intron (ENSMUSG00000022811.17, intron 5 of 7) protein_coding-intron (ENSMUSG00000022811.17, intron 6 of 8) 86891 ENSMUSG00000022811.17 ENSMUSG00000022811 ENSMUST00000089677 Zfp148 protein_coding Interval_97766 chr2 143934164 143935037 + 0 NA intron (ENSMUSG00000015932.8, intron 1 of 3) protein_coding-intron (ENSMUSG00000015932.8, intron 1 of 3) 19280 ENSMUSG00000015932.8 ENSMUSG00000015932 ENSMUST00000103172 Dstn protein_coding Interval_2111 chr1 36492445 36492917 + 0 NA intron (ENSMUSG00000037408.10, intron 1 of 6) protein_coding-intron (ENSMUSG00000037408.10, intron 1 of 6) -13881 ENSMUSG00000106081.1 ENSMUSG00000106081 ENSMUST00000200651 Gm47280 miRNA Interval_116907 chr4 118152760 118153842 + 0 NA exon (ENSMUSG00000033326.15, exon 12 of 19) protein_coding-exon (ENSMUSG00000033326.15, exon 12 of 19) 8356 ENSMUSG00000033326.15 ENSMUSG00000033326 ENSMUST00000164821 Kdm4a protein_coding Interval_98394 chr2 152031070 152031401 + 0 NA Intergenic Intergenic 31370 ENSMUSG00000027463.14 ENSMUSG00000027463 ENSMUST00000109858 Slc52a3 protein_coding Interval_9427 chr1 157016380 157016614 + 0 NA intron (ENSMUSG00000101768.1, intron 2 of 2) lincRNA-intron (ENSMUSG00000101768.1, intron 2 of 2) -27050 ENSMUSG00000103325.1 ENSMUSG00000103325 ENSMUST00000193527 Gm10531 TEC Interval_8705 chr1 149346088 149346288 + 0 NA Intergenic Intergenic 63757 ENSMUSG00000102314.1 ENSMUSG00000102314 ENSMUST00000194210 Gm37630 TEC Interval_104843 chr3 75830172 75830397 + 0 NA Intergenic Intergenic 82087 ENSMUSG00000100962.3 ENSMUSG00000100962 ENSMUST00000189155 Gm29133 protein_coding Interval_55466 chr14 87566290 87566524 + 0 NA Intergenic Intergenic 27308 ENSMUSG00000022019.16 ENSMUSG00000022019 ENSMUST00000227304 Tdrd3 protein_coding Interval_133297 chr5 151314884 151315449 + 0 NA intron (ENSMUSG00000107011.1, intron 1 of 5) protein_coding-intron (ENSMUSG00000107011.1, intron 1 of 5) 34043 ENSMUSG00000107154.1 ENSMUSG00000107154 ENSMUST00000201227 Gm7041 processed_pseudogene Interval_42015 chr13 6540675 6540868 + 0 NA Intergenic Intergenic 10176 ENSMUSG00000114195.1 ENSMUSG00000114195 ENSMUST00000221776 2900042G08Rik TEC Interval_121067 chr4 152547525 152548564 + 0 NA intron (ENSMUSG00000039577.17, intron 17 of 28) protein_coding-intron (ENSMUSG00000039577.17, intron 17 of 28) 69866 ENSMUSG00000039577.17 ENSMUSG00000039577 ENSMUST00000123635 Nphp4 protein_coding Interval_156631 chr8 56023836 56024224 + 0 NA intron (ENSMUSG00000038257.10, intron 3 of 9) protein_coding-intron (ENSMUSG00000038257.10, intron 3 of 9) -6930 ENSMUSG00000109662.1 ENSMUSG00000109662 ENSMUST00000209828 Gm45366 processed_pseudogene Interval_59648 chr15 57537320 57537565 + 0 NA Intergenic Intergenic -48571 ENSMUSG00000115629.1 ENSMUSG00000115629 ENSMUST00000227877 Gm49235 processed_pseudogene Interval_34633 chr12 8232634 8233326 + 0 NA intron (ENSMUSG00000037669.15, intron 3 of 4) protein_coding-intron (ENSMUSG00000037669.15, intron 3 of 6) -23815 ENSMUSG00000112694.1 ENSMUSG00000112694 ENSMUST00000217927 Gm33037 antisense Interval_96913 chr2 129429729 129429940 + 0 NA Intergenic Intergenic -50438 ENSMUSG00000081888.1 ENSMUSG00000081888 ENSMUST00000122326 Spcs2-ps unprocessed_pseudogene Interval_152136 chr7 129974835 129975474 + 0 NA intron (ENSMUSG00000108504.1, intron 3 of 3) lincRNA-intron (ENSMUSG00000108504.1, intron 3 of 3) 12989 ENSMUSG00000108504.1 ENSMUSG00000108504 ENSMUST00000206701 Gm4265 lincRNA Interval_173521 chrX 98252652 98253370 + 0 NA intron (ENSMUSG00000046532.8, intron 2 of 7) protein_coding-intron (ENSMUSG00000046532.8, intron 2 of 7) 104242 ENSMUSG00000046532.8 ENSMUSG00000046532 ENSMUST00000052837 Ar protein_coding Interval_20418 chr10 117435276 117437145 + 0 NA Intergenic Intergenic 6592 ENSMUSG00000095826.1 ENSMUSG00000095826 ENSMUST00000178437 Gm9002 processed_pseudogene Interval_162557 chr9 4292731 4293046 + 0 NA Intergenic Intergenic 16583 ENSMUSG00000025894.11 ENSMUSG00000025894 ENSMUST00000212897 Aasdhppt protein_coding Interval_132586 chr5 146478999 146480176 + 0 NA Intergenic Intergenic -2378 ENSMUSG00000096344.2 ENSMUSG00000096344 ENSMUST00000179032 Gm6408 protein_coding Interval_144617 chr7 27159689 27160478 + 0 NA intron (ENSMUSG00000058709.11, intron 3 of 5) protein_coding-intron (ENSMUSG00000058709.11, intron 3 of 5) 788 ENSMUSG00000058709.11 ENSMUSG00000058709 ENSMUST00000134906 Egln2 protein_coding Interval_859 chr1 12744266 12745538 + 0 NA intron (ENSMUSG00000016918.15, intron 2 of 3) protein_coding-intron (ENSMUSG00000016918.15, intron 2 of 21) 25438 ENSMUSG00000016918.15 ENSMUSG00000016918 ENSMUST00000185780 Sulf1 protein_coding Interval_169824 chr9 102216590 102217515 + 0 NA intron (ENSMUSG00000032537.15, intron 2 of 4) protein_coding-intron (ENSMUSG00000032537.15, intron 2 of 15) 44314 ENSMUSG00000102963.1 ENSMUSG00000102963 ENSMUST00000192536 Gm37945 TEC Interval_100016 chr2 166544393 166545387 + 0 NA Intergenic Intergenic -35716 ENSMUSG00000085682.2 ENSMUSG00000085682 ENSMUST00000123480 Gm14267 transcribed_processed_pseudogene Interval_34221 chr11 121374984 121375411 + 0 NA intron (ENSMUSG00000025170.13, intron 1 of 2) protein_coding-intron (ENSMUSG00000025170.13, intron 1 of 5) 12007 ENSMUSG00000098981.1 ENSMUSG00000098981 ENSMUST00000184435 Mir7236 miRNA Interval_84879 chr19 18577485 18579306 + 0 NA TTS (ENSMUSG00000024725.13) protein_coding-TTS (ENSMUSG00000024725.13) -3060 ENSMUSG00000080783.1 ENSMUSG00000080783 ENSMUST00000117398 Gm8250 processed_pseudogene Interval_29046 chr11 80044735 80045058 + 0 NA Intergenic Intergenic 35965 ENSMUSG00000017561.16 ENSMUSG00000017561 ENSMUST00000178280 Crlf3 protein_coding Interval_6254 chr1 104835805 104835982 + 0 NA intron (ENSMUSG00000050840.8, intron 1 of 11) protein_coding-intron (ENSMUSG00000050840.8, intron 1 of 11) 45142 ENSMUSG00000084704.1 ENSMUSG00000084704 ENSMUST00000122755 n-R5s216 rRNA Interval_153968 chr8 11555053 11556722 + 0 NA promoter-TSS (ENSMUSG00000045969.8) protein_coding-promoter-TSS (ENSMUSG00000045969.8) 316 ENSMUSG00000045969.8 ENSMUSG00000045969 ENSMUST00000209565 Ing1 protein_coding Interval_96977 chr2 130218260 130218473 + 0 NA intron (ENSMUSG00000060332.9, intron 4 of 18) protein_coding-intron (ENSMUSG00000060332.9, intron 5 of 19) 21823 ENSMUSG00000060332.9 ENSMUSG00000060332 ENSMUST00000166774 Tmc2 protein_coding Interval_117541 chr4 124522507 124522964 + 0 NA Intergenic Intergenic -46455 ENSMUSG00000073759.6 ENSMUSG00000073759 ENSMUST00000133499 4933407E24Rik lincRNA Interval_46007 chr13 60007374 60007567 + 0 NA Intergenic Intergenic 50155 ENSMUSG00000114795.1 ENSMUSG00000114795 ENSMUST00000223983 Gm48396 lincRNA Interval_142998 chr6 148214973 148215214 + 0 NA promoter-TSS (ENSMUSG00000084823.2) lincRNA-promoter-TSS (ENSMUSG00000084823.2) -520 ENSMUSG00000084823.2 ENSMUSG00000084823 ENSMUST00000130872 Gm17216 lincRNA Interval_135789 chr6 47340231 47341523 + 0 NA Intergenic Intergenic 92212 ENSMUSG00000107853.1 ENSMUSG00000107853 ENSMUST00000203098 Gm18584 processed_pseudogene Interval_90601 chr2 31396843 31397573 + 0 NA intron (ENSMUSG00000055632.18, intron 41 of 97) protein_coding-intron (ENSMUSG00000055632.18, intron 41 of 97) 82793 ENSMUSG00000055632.18 ENSMUSG00000055632 ENSMUST00000141294 Hmcn2 protein_coding Interval_83996 chr19 6007935 6009652 + 0 NA intron (ENSMUSG00000024942.17, intron 7 of 20) protein_coding-intron (ENSMUSG00000024942.17, intron 7 of 21) -3827 ENSMUSG00000097404.2 ENSMUSG00000097404 ENSMUST00000180505 Gm10814 antisense Interval_138237 chr6 86519466 86521242 + 0 NA Intergenic Intergenic -4081 ENSMUSG00000107689.1 ENSMUSG00000107689 ENSMUST00000204288 Gm44386 lincRNA Interval_33170 chr11 114912621 114913494 + 0 NA Intergenic Intergenic 4326 ENSMUSG00000083237.1 ENSMUSG00000083237 ENSMUST00000117948 Gm11698 processed_pseudogene Interval_119548 chr4 138315950 138316533 + 0 NA promoter-TSS (ENSMUSG00000099200.1) miRNA-promoter-TSS (ENSMUSG00000099200.1) -41 ENSMUSG00000099200.1 ENSMUSG00000099200 ENSMUST00000183998 Mir7019 miRNA Interval_74565 chr17 53467735 53467963 + 0 NA promoter-TSS (ENSMUSG00000117111.1) processed_pseudogene-promoter-TSS (ENSMUSG00000117111.1) -534 ENSMUSG00000117111.1 ENSMUSG00000117111 ENSMUST00000232903 Tpt1-ps7 processed_pseudogene Interval_33025 chr11 113743123 113743553 + 0 NA intron (ENSMUSG00000041598.7, intron 1 of 1) protein_coding-intron (ENSMUSG00000041598.7, intron 1 of 1) 7816 ENSMUSG00000041598.7 ENSMUSG00000041598 ENSMUST00000153453 Cdc42ep4 protein_coding Interval_70365 chr17 9042691 9043199 + 0 NA Intergenic Intergenic 54603 ENSMUSG00000023873.13 ENSMUSG00000023873 ENSMUST00000136954 1700010I14Rik protein_coding Interval_70870 chr17 15497800 15498638 + 0 NA promoter-TSS (ENSMUSG00000014769.10) protein_coding-promoter-TSS (ENSMUSG00000014769.10) 1532 ENSMUSG00000014769.10 ENSMUSG00000014769 ENSMUST00000231341 Psmb1 protein_coding Interval_46177 chr13 62240225 62240484 + 0 NA Intergenic Intergenic -32407 ENSMUSG00000113081.1 ENSMUSG00000113081 ENSMUST00000221763 Gm3333 transcribed_processed_pseudogene Interval_127039 chr5 99868318 99868711 + 0 NA Intergenic Intergenic -1734 ENSMUSG00000084445.1 ENSMUSG00000084445 ENSMUST00000122496 Gm26252 snoRNA Interval_117921 chr4 127063655 127064831 + 0 NA Intergenic Intergenic -3183 ENSMUSG00000043872.14 ENSMUSG00000043872 ENSMUST00000136186 Zmym1 protein_coding Interval_43787 chr13 36436602 36437010 + 0 NA intron (ENSMUSG00000021420.13, intron 6 of 7) protein_coding-intron (ENSMUSG00000021420.13, intron 6 of 6) 22474 ENSMUSG00000114714.1 ENSMUSG00000114714 ENSMUST00000224213 Gm48763 TEC Interval_101041 chr2 174457266 174457595 + 0 NA exon (ENSMUSG00000016255.5, exon 4 of 4) protein_coding-exon (ENSMUSG00000016255.5, exon 4 of 4) 6659 ENSMUSG00000016252.7 ENSMUSG00000016252 ENSMUST00000153132 Atp5e protein_coding Interval_21266 chr10 127557380 127557587 + 0 NA exon (ENSMUSG00000040249.15, exon 49 of 89) protein_coding-exon (ENSMUSG00000040249.15, exon 49 of 89) -14275 ENSMUSG00000040249.15 ENSMUSG00000040249 ENSMUST00000118455 Lrp1 protein_coding Interval_149981 chr7 104189500 104189815 + 0 NA exon (ENSMUSG00000044899.3, exon 1 of 1) protein_coding-exon (ENSMUSG00000044899.3, exon 1 of 1) -6265 ENSMUSG00000042909.4 ENSMUSG00000042909 ENSMUST00000052659 Olfr648 protein_coding Interval_99408 chr2 160730780 160732279 + 0 NA promoter-TSS (ENSMUSG00000016933.17) protein_coding-promoter-TSS (ENSMUSG00000016933.17) -170 ENSMUSG00000016933.17 ENSMUSG00000016933 ENSMUST00000143997 Plcg1 protein_coding Interval_128962 chr5 116328747 116329453 + 0 NA Intergenic Intergenic 16740 ENSMUSG00000086715.1 ENSMUSG00000086715 ENSMUST00000128473 B230112J18Rik lincRNA Interval_115240 chr4 94735167 94735394 + 0 NA Intergenic Intergenic 56100 ENSMUSG00000028576.12 ENSMUSG00000028576 ENSMUST00000152289 Ift74 protein_coding Interval_2 GL456210.1 3988 4831 + 0 NA NA NA NA NA Interval_94700 chr2 93488726 93489404 + 0 NA Intergenic Intergenic 20626 ENSMUSG00000075025.10 ENSMUSG00000075025 ENSMUST00000167654 Gm10804 lincRNA Interval_27077 chr11 62714308 62715045 + 0 NA exon (ENSMUSG00000005267.13, exon 5 of 5) protein_coding-exon (ENSMUSG00000005267.13, exon 5 of 5) 13990 ENSMUSG00000005267.13 ENSMUSG00000005267 ENSMUST00000127732 Zfp287 protein_coding Interval_145938 chr7 42479244 42479638 + 0 NA intron (ENSMUSG00000092416.2, intron 5 of 6) protein_coding-intron (ENSMUSG00000092416.2, intron 4 of 4) -2078 ENSMUSG00000092416.2 ENSMUSG00000092416 ENSMUST00000173439 Zfp141 protein_coding Interval_14163 chr10 28225262 28225811 + 0 NA intron (ENSMUSG00000019889.10, intron 2 of 2) protein_coding-intron (ENSMUSG00000019889.10, intron 2 of 31) -11415 ENSMUSG00000076377.1 ENSMUSG00000076377 ENSMUST00000102422 Gm22370 miRNA Interval_150291 chr7 109373354 109374314 + 0 NA intron (ENSMUSG00000031027.15, intron 1 of 13) protein_coding-intron (ENSMUSG00000031027.15, intron 1 of 12) 15041 ENSMUSG00000081370.1 ENSMUSG00000081370 ENSMUST00000120160 Gm9105 processed_pseudogene Interval_109929 chr3 151849127 151849469 + 0 NA Intergenic Intergenic 12793 ENSMUSG00000105403.1 ENSMUSG00000105403 ENSMUST00000197392 Gm43618 TEC Interval_146084 chr7 43774579 43776508 + 0 NA promoter-TSS (ENSMUSG00000067616.11) protein_coding-promoter-TSS (ENSMUSG00000067616.11) -786 ENSMUSG00000067616.11 ENSMUSG00000067616 ENSMUST00000205415 Klk11 protein_coding Interval_88469 chr2 5403676 5404297 + 0 NA intron (ENSMUSG00000039145.16, intron 3 of 10) protein_coding-intron (ENSMUSG00000039145.16, intron 3 of 10) 120336 ENSMUSG00000080820.1 ENSMUSG00000080820 ENSMUST00000117204 Gm13197 processed_pseudogene Interval_113526 chr4 55561201 55561443 + 0 NA Intergenic Intergenic -1943 ENSMUSG00000066176.3 ENSMUSG00000066176 ENSMUST00000135987 Gm12511 lincRNA Interval_142636 chr6 144471315 144472725 + 0 NA intron (ENSMUSG00000041540.16, intron 3 of 6) protein_coding-intron (ENSMUSG00000041540.16, intron 3 of 13) -9205 ENSMUSG00000087157.1 ENSMUSG00000087157 ENSMUST00000156443 Sox5os2 antisense Interval_164843 chr9 42414432 42414690 + 0 NA exon (ENSMUSG00000037287.15, exon 8 of 8) protein_coding-exon (ENSMUSG00000037287.15, exon 8 of 8) -14834 ENSMUSG00000037705.13 ENSMUSG00000037705 ENSMUST00000160940 Tecta protein_coding Interval_112390 chr4 41015058 41015375 + 0 NA exon (ENSMUSG00000028423.15, exon 16 of 24) protein_coding-exon (ENSMUSG00000028423.15, exon 16 of 24) 12706 ENSMUSG00000028423.15 ENSMUSG00000028423 ENSMUST00000131305 Nfx1 protein_coding Interval_144186 chr7 19857678 19858339 + 0 NA exon (ENSMUSG00000014686.8, exon 3 of 6) protein_coding-exon (ENSMUSG00000014686.8, exon 3 of 6) -1772 ENSMUSG00000014686.8 ENSMUSG00000014686 ENSMUST00000208198 Ceacam16 protein_coding Interval_69108 chr16 90717582 90717902 + 0 NA Intergenic Intergenic 9397 ENSMUSG00000022978.11 ENSMUSG00000022978 ENSMUST00000147546 Mis18a protein_coding Interval_32608 chr11 109113932 109114227 + 0 NA Intergenic Intergenic 30290 ENSMUSG00000078605.2 ENSMUSG00000078605 ENSMUST00000106710 E030025P04Rik protein_coding Interval_19102 chr10 94561501 94563206 + 0 NA intron (ENSMUSG00000020023.18, intron 1 of 1) protein_coding-intron (ENSMUSG00000020023.18, intron 1 of 3) 11501 ENSMUSG00000020023.18 ENSMUSG00000020023 ENSMUST00000117929 Tmcc3 protein_coding Interval_69016 chr16 90143196 90144819 + 0 NA promoter-TSS (ENSMUSG00000002489.16) protein_coding-promoter-TSS (ENSMUSG00000002489.16) -19173 ENSMUSG00000116553.1 ENSMUSG00000116553 ENSMUST00000231626 Gm7307 processed_pseudogene Interval_73083 chr17 34680056 34681217 + 0 NA intron (ENSMUSG00000033327.18, intron 7 of 43) protein_coding-intron (ENSMUSG00000033327.18, intron 5 of 40) 7166 ENSMUSG00000095142.1 ENSMUSG00000095142 ENSMUST00000179962 Gm24389 snRNA Interval_98166 chr2 149158121 149158928 + 0 NA Intergenic Intergenic -98753 ENSMUSG00000086963.1 ENSMUSG00000086963 ENSMUST00000135438 Gm14135 lincRNA Interval_994 chr1 13696691 13698008 + 0 NA intron (ENSMUSG00000067813.3, intron 3 of 3) protein_coding-intron (ENSMUSG00000067813.3, intron 3 of 3) 28578 ENSMUSG00000067813.3 ENSMUSG00000067813 ENSMUST00000088542 Xkr9 protein_coding Interval_148906 chr7 89956981 89957769 + 0 NA promoter-TSS (ENSMUSG00000030619.10) protein_coding-promoter-TSS (ENSMUSG00000030619.10) 8019 ENSMUSG00000109038.1 ENSMUSG00000109038 ENSMUST00000208880 Gm45120 TEC Interval_7733 chr1 133332389 133334881 + 0 NA Intergenic Intergenic 6423 ENSMUSG00000116158.1 ENSMUSG00000116158 ENSMUST00000178033 Kiss1 protein_coding Interval_111444 chr4 21712026 21712671 + 0 NA Intergenic Intergenic -15410 ENSMUSG00000028252.20 ENSMUSG00000028252 ENSMUST00000133712 Ccnc protein_coding Interval_7215 chr1 127925858 127926091 + 0 NA exon (ENSMUSG00000036104.12, exon 1 of 1) protein_coding-exon (ENSMUSG00000036104.12, exon 1 of 1) -33542 ENSMUSG00000099760.1 ENSMUSG00000099760 ENSMUST00000186230 Gm28800 antisense Interval_83119 chr18 81590543 81590743 + 0 NA Intergenic Intergenic 47104 ENSMUSG00000117870.1 ENSMUSG00000117870 ENSMUST00000236490 Gm41792 lincRNA Interval_160518 chr8 110231583 110232467 + 0 NA Intergenic Intergenic 16360 ENSMUSG00000046441.5 ENSMUSG00000046441 ENSMUST00000056972 Cmtr2 protein_coding Interval_126211 chr5 82418345 82418636 + 0 NA Intergenic Intergenic 81639 ENSMUSG00000106926.1 ENSMUSG00000106926 ENSMUST00000200912 Rpl7-ps7 processed_pseudogene Interval_117695 chr4 125590305 125591485 + 0 NA intron (ENSMUSG00000001985.9, intron 1 of 15) protein_coding-intron (ENSMUSG00000001985.9, intron 1 of 15) 86146 ENSMUSG00000094403.1 ENSMUSG00000094403 ENSMUST00000102081 Mir692-2 miRNA Interval_42830 chr13 20115069 20117035 + 0 NA intron (ENSMUSG00000041112.17, intron 1 of 13) protein_coding-intron (ENSMUSG00000041112.17, intron 1 of 21) -120248 ENSMUSG00000050243.6 ENSMUSG00000050243 ENSMUST00000091762 Gm5446 processed_pseudogene Interval_172630 chrX 38566545 38567102 + 0 NA intron (ENSMUSG00000031095.15, intron 2 of 22) protein_coding-intron (ENSMUSG00000031095.15, intron 2 of 22) -2161 ENSMUSG00000031095.15 ENSMUSG00000031095 ENSMUST00000050083 Cul4b protein_coding Interval_151514 chr7 123199304 123201227 + 0 NA Intergenic Intergenic 28619 ENSMUSG00000052707.8 ENSMUSG00000052707 ENSMUST00000206126 Tnrc6a protein_coding Interval_118113 chr4 129024824 129025132 + 0 NA Intergenic Intergenic 31625 ENSMUSG00000028792.14 ENSMUSG00000028792 ENSMUST00000152762 Ak2 protein_coding Interval_170321 chr9 106917931 106919106 + 0 NA intron (ENSMUSG00000039716.12, intron 8 of 8) protein_coding-intron (ENSMUSG00000039716.12, intron 40 of 52) -5364 ENSMUSG00000039716.12 ENSMUSG00000039716 ENSMUST00000165182 Dock3 protein_coding Interval_19695 chr10 108161369 108163181 + 0 NA promoter-TSS (ENSMUSG00000019907.10) protein_coding-promoter-TSS (ENSMUSG00000019907.10) -19843 ENSMUSG00000112401.1 ENSMUSG00000112401 ENSMUST00000219675 Gm47999 processed_pseudogene Interval_97779 chr2 143990575 143991032 + 0 NA intron (ENSMUSG00000027422.15, intron 1 of 2) protein_coding-intron (ENSMUSG00000027422.15, intron 1 of 23) -33158 ENSMUSG00000027422.15 ENSMUSG00000027422 ENSMUST00000037875 Rrbp1 protein_coding Interval_30914 chr11 97198517 97199127 + 0 NA Intergenic Intergenic -33422 ENSMUSG00000001440.5 ENSMUSG00000001440 ENSMUST00000153727 Kpnb1 protein_coding Interval_167058 chr9 64944180 64944503 + 0 NA intron (ENSMUSG00000034452.7, intron 2 of 9) protein_coding-intron (ENSMUSG00000034452.7, intron 2 of 9) 7266 ENSMUSG00000034452.7 ENSMUSG00000034452 ENSMUST00000037798 Slc24a1 protein_coding Interval_139475 chr6 100419880 100422960 + 0 NA Intergenic Intergenic 73394 ENSMUSG00000087929.1 ENSMUSG00000087929 ENSMUST00000157304 Gm23234 snoRNA Interval_90844 chr2 32928151 32928826 + 0 NA intron (ENSMUSG00000026792.16, intron 24 of 25) protein_coding-intron (ENSMUSG00000026792.16, intron 23 of 24) 10311 ENSMUSG00000026792.16 ENSMUSG00000026792 ENSMUST00000138015 Lrsam1 protein_coding Interval_125868 chr5 75155444 75157308 + 0 NA promoter-TSS (ENSMUSG00000029231.15) protein_coding-promoter-TSS (ENSMUSG00000029231.15) -457 ENSMUSG00000029231.15 ENSMUSG00000029231 ENSMUST00000200822 Pdgfra protein_coding Interval_91078 chr2 34855015 34855705 + 0 NA intron (ENSMUSG00000026869.12, intron 6 of 7) protein_coding-intron (ENSMUSG00000026869.12, intron 8 of 9) 16850 ENSMUSG00000026869.12 ENSMUSG00000026869 ENSMUST00000202917 Psmd5 protein_coding Interval_159268 chr8 92628503 92629648 + 0 NA Intergenic Intergenic -45751 ENSMUSG00000031738.14 ENSMUSG00000031738 ENSMUST00000167261 Irx6 protein_coding Interval_73516 chr17 38684663 38684885 + 0 NA Intergenic Intergenic -34418 ENSMUSG00000117273.1 ENSMUSG00000117273 ENSMUST00000233036 Gm49815 unprocessed_pseudogene Interval_113324 chr4 53465992 53467507 + 0 NA intron (ENSMUSG00000028412.17, intron 1 of 3) protein_coding-intron (ENSMUSG00000028412.17, intron 1 of 15) 26078 ENSMUSG00000028412.17 ENSMUSG00000028412 ENSMUST00000133582 Slc44a1 protein_coding Interval_2148 chr1 36724743 36725001 + 0 NA intron (ENSMUSG00000102416.4, intron 3 of 8) protein_coding-intron (ENSMUSG00000102416.4, intron 3 of 4) 10334 ENSMUSG00000102416.4 ENSMUSG00000102416 ENSMUST00000193459 4933424G06Rik protein_coding Interval_110897 chr4 9750033 9751107 + 0 NA Intergenic Intergenic -20227 ENSMUSG00000085558.7 ENSMUSG00000085558 ENSMUST00000154082 4930412C18Rik processed_transcript Interval_122904 chr5 27158608 27158844 + 0 NA intron (ENSMUSG00000061576.15, intron 1 of 25) protein_coding-intron (ENSMUSG00000061576.15, intron 1 of 25) -37229 ENSMUSG00000105946.1 ENSMUSG00000105946 ENSMUST00000199729 Gm43776 TEC Interval_90592 chr2 31313803 31315154 + 0 NA promoter-TSS (ENSMUSG00000055632.18) protein_coding-promoter-TSS (ENSMUSG00000055632.18) 63 ENSMUSG00000055632.18 ENSMUSG00000055632 ENSMUST00000141294 Hmcn2 protein_coding Interval_7358 chr1 130436690 130436884 + 0 NA exon (ENSMUSG00000086825.1, exon 1 of 3) lincRNA-exon (ENSMUSG00000086825.1, exon 1 of 3) 404 ENSMUSG00000086825.1 ENSMUSG00000086825 ENSMUST00000130486 Gm15675 lincRNA Interval_103243 chr3 37348038 37349591 + 0 NA promoter-TSS (ENSMUSG00000037225.13) protein_coding-promoter-TSS (ENSMUSG00000037225.13) 161 ENSMUSG00000037225.13 ENSMUSG00000037225 ENSMUST00000199938 Fgf2 protein_coding Interval_57020 chr15 4357426 4358057 + 0 NA Intergenic Intergenic -17750 ENSMUSG00000049148.8 ENSMUSG00000049148 ENSMUST00000061925 Plcxd3 protein_coding Interval_144919 chr7 28929448 28930477 + 0 NA intron (ENSMUSG00000109314.1, intron 1 of 1) protein_coding-intron (ENSMUSG00000054808.15, intron 1 of 20) 13566 ENSMUSG00000109314.1 ENSMUSG00000109314 ENSMUST00000208229 Gm44699 sense_intronic Interval_104157 chr3 59208861 59210227 + 0 NA exon (ENSMUSG00000036362.2, exon 2 of 2) protein_coding-exon (ENSMUSG00000036362.2, exon 2 of 2) 1338 ENSMUSG00000036362.2 ENSMUSG00000036362 ENSMUST00000040622 P2ry13 protein_coding Interval_55399 chr14 86678349 86678617 + 0 NA intron (ENSMUSG00000022021.14, intron 1 of 3) protein_coding-intron (ENSMUSG00000022021.14, intron 27 of 27) 28702 ENSMUSG00000115306.1 ENSMUSG00000115306 ENSMUST00000226731 Gm49159 TEC Interval_68572 chr16 78949450 78950389 + 0 NA TTS (ENSMUSG00000022860.15) protein_coding-TTS (ENSMUSG00000022860.15) -14177 ENSMUSG00000085094.2 ENSMUSG00000085094 ENSMUST00000152173 Gm15692 processed_pseudogene Interval_84299 chr19 9922292 9923281 + 0 NA Intergenic Intergenic 5748 ENSMUSG00000118008.1 ENSMUSG00000118008 ENSMUST00000236750 Gm36913 lincRNA Interval_165440 chr9 47925156 47925370 + 0 NA Intergenic Intergenic 22898 ENSMUSG00000111668.1 ENSMUSG00000111668 ENSMUST00000215015 Gm47213 processed_pseudogene Interval_95577 chr2 112447680 112448042 + 0 NA Intergenic Intergenic -7136 ENSMUSG00000055943.5 ENSMUSG00000055943 ENSMUST00000069747 Emc7 protein_coding Interval_69690 chr16 95570581 95571114 + 0 NA intron (ENSMUSG00000040732.20, intron 1 of 10) protein_coding-intron (ENSMUSG00000040732.20, intron 1 of 10) -40482 ENSMUSG00000040732.20 ENSMUSG00000040732 ENSMUST00000121809 Erg protein_coding Interval_132123 chr5 142849378 142849670 + 0 NA Intergenic Intergenic 3675 ENSMUSG00000082308.1 ENSMUSG00000082308 ENSMUST00000117498 Gm15770 processed_pseudogene Interval_161026 chr8 117015302 117019665 + 0 NA intron (ENSMUSG00000034416.18, intron 3 of 7) protein_coding-intron (ENSMUSG00000034416.18, intron 34 of 42) 6612 ENSMUSG00000034416.18 ENSMUSG00000034416 ENSMUST00000160449 Pkd1l2 protein_coding Interval_84452 chr19 11044847 11045980 + 0 NA Intergenic Intergenic -7778 ENSMUSG00000101264.1 ENSMUSG00000101264 ENSMUST00000185380 Gm28347 lincRNA Interval_116822 chr4 117465479 117465929 + 0 NA intron (ENSMUSG00000028677.19, intron 2 of 2) protein_coding-intron (ENSMUSG00000028677.19, intron 2 of 14) 19754 ENSMUSG00000086876.1 ENSMUSG00000086876 ENSMUST00000136115 Gm12828 antisense Interval_159056 chr8 89143410 89143741 + 0 NA Intergenic Intergenic 3483 ENSMUSG00000094790.2 ENSMUSG00000094790 ENSMUST00000177870 Gm6625 processed_pseudogene Interval_40098 chr12 101145353 101145824 + 0 NA promoter-TSS (ENSMUSG00000092054.3) transcribed_processed_pseudogene-promoter-TSS (ENSMUSG00000092054.3) -3519 ENSMUSG00000092054.3 ENSMUSG00000092054 ENSMUST00000185083 Kif4-ps transcribed_processed_pseudogene Interval_73514 chr17 38641800 38642111 + 0 NA intron (ENSMUSG00000092342.2, intron 2 of 2) protein_coding-intron (ENSMUSG00000092342.2, intron 2 of 2) 2508 ENSMUSG00000092342.2 ENSMUSG00000092342 ENSMUST00000174742 Esp31 protein_coding Interval_134477 chr6 29023197 29024535 + 0 NA exon (ENSMUSG00000092090.2, exon 2 of 2) lincRNA-exon (ENSMUSG00000092090.2, exon 2 of 2) 1247 ENSMUSG00000065469.1 ENSMUSG00000065469 ENSMUST00000083535 Mir129-1 miRNA Interval_73401 chr17 36996897 36997960 + 0 NA Intergenic Intergenic -5126 ENSMUSG00000036036.15 ENSMUSG00000036036 ENSMUST00000172502 Zfp57 protein_coding Interval_5431 chr1 88742288 88742768 + 0 NA Intergenic Intergenic -12362 ENSMUSG00000097398.2 ENSMUSG00000097398 ENSMUST00000180596 Platr5 lincRNA Interval_120595 chr4 149574323 149575051 + 0 NA Intergenic Intergenic -6897 ENSMUSG00000086949.1 ENSMUSG00000086949 ENSMUST00000145263 Gm13066 antisense Interval_113195 chr4 49491115 49491543 + 0 NA intron (ENSMUSG00000039653.9, intron 2 of 2) protein_coding-intron (ENSMUSG00000039653.9, intron 3 of 3) 11791 ENSMUSG00000039653.9 ENSMUSG00000039653 ENSMUST00000166036 Baat protein_coding Interval_91298 chr2 37550948 37551201 + 0 NA intron (ENSMUSG00000035437.15, intron 7 of 13) protein_coding-intron (ENSMUSG00000035437.15, intron 19 of 25) 34742 ENSMUSG00000053164.6 ENSMUSG00000053164 ENSMUST00000065441 Gpr21 protein_coding Interval_170161 chr9 105720096 105720494 + 0 NA intron (ENSMUSG00000043719.14, intron 28 of 36) protein_coding-intron (ENSMUSG00000043719.14, intron 28 of 36) -7490 ENSMUSG00000102877.1 ENSMUSG00000102877 ENSMUST00000195709 Gm38314 TEC Interval_5457 chr1 89003715 89004025 + 0 NA Intergenic Intergenic -12243 ENSMUSG00000099378.1 ENSMUSG00000099378 ENSMUST00000186180 1700067G17Rik lincRNA Interval_153815 chr8 8963534 8964155 + 0 NA Intergenic Intergenic -31145 ENSMUSG00000109346.1 ENSMUSG00000109346 ENSMUST00000209045 Gm44515 lincRNA Interval_102349 chr3 22090756 22091053 + 0 NA intron (ENSMUSG00000027630.13, intron 2 of 16) protein_coding-intron (ENSMUSG00000027630.13, intron 1 of 15) -9789 ENSMUSG00000103293.1 ENSMUSG00000103293 ENSMUST00000195073 Gm5842 processed_pseudogene Interval_139123 chr6 95550758 95551459 + 0 NA intron (ENSMUSG00000061838.7, intron 9 of 10) protein_coding-intron (ENSMUSG00000061838.7, intron 9 of 10) 106360 ENSMUSG00000061838.7 ENSMUSG00000061838 ENSMUST00000203109 Suclg2 protein_coding Interval_123268 chr5 31008379 31008633 + 0 NA Intergenic Intergenic 34099 ENSMUSG00000006641.12 ENSMUSG00000006641 ENSMUST00000200816 Slc5a6 protein_coding Interval_160749 chr8 111939846 111941371 + 0 NA promoter-TSS (ENSMUSG00000031950.7) protein_coding-promoter-TSS (ENSMUSG00000031950.7) -460 ENSMUSG00000031950.7 ENSMUSG00000031950 ENSMUST00000133628 Gabarapl2 protein_coding Interval_129894 chr5 122950547 122952672 + 0 NA intron (ENSMUSG00000029475.17, intron 6 of 10) protein_coding-intron (ENSMUSG00000029475.17, intron 6 of 22) -30061 ENSMUSG00000029475.17 ENSMUSG00000029475 ENSMUST00000150543 Kdm2b protein_coding Interval_52917 chr14 52047264 52048740 + 0 NA Intergenic Intergenic -8149 ENSMUSG00000044286.6 ENSMUSG00000044286 ENSMUST00000214342 Olfr221 protein_coding Interval_1115 chr1 15823504 15824338 + 0 NA intron (ENSMUSG00000025925.14, intron 6 of 9) protein_coding-intron (ENSMUSG00000025925.14, intron 5 of 8) 16280 ENSMUSG00000025925.14 ENSMUSG00000025925 ENSMUST00000188684 Terf1 protein_coding Interval_146039 chr7 43417254 43417926 + 0 NA intron (ENSMUSG00000030468.12, intron 7 of 7) protein_coding-intron (ENSMUSG00000030468.12, intron 11 of 11) 9351 ENSMUSG00000030468.12 ENSMUSG00000030468 ENSMUST00000123042 Siglecg protein_coding Interval_166711 chr9 62202063 62203549 + 0 NA Intergenic Intergenic -38864 ENSMUSG00000110826.1 ENSMUSG00000110826 ENSMUST00000217557 Gm47262 lincRNA Interval_70952 chr17 16708318 16708712 + 0 NA Intergenic Intergenic -17938 ENSMUSG00000116944.1 ENSMUSG00000116944 ENSMUST00000231367 Gm7477 processed_pseudogene Interval_85163 chr19 23234666 23235075 + 0 NA intron (ENSMUSG00000024943.9, intron 12 of 23) protein_coding-intron (ENSMUSG00000024943.9, intron 12 of 24) 37729 ENSMUSG00000024943.9 ENSMUSG00000024943 ENSMUST00000224723 Smc5 protein_coding Interval_43154 chr13 24742485 24743745 + 0 NA intron (ENSMUSG00000085861.1, intron 1 of 1) protein_coding-intron (ENSMUSG00000085861.1, intron 1 of 1) 1883 ENSMUSG00000085861.1 ENSMUSG00000085861 ENSMUST00000136906 Armh2 protein_coding Interval_103808 chr3 53118228 53120382 + 0 NA intron (ENSMUSG00000048332.13, intron 2 of 3) protein_coding-intron (ENSMUSG00000048332.13, intron 2 of 3) -5894 ENSMUSG00000104968.1 ENSMUSG00000104968 ENSMUST00000196732 Gm43803 antisense Interval_43211 chr13 25297586 25298603 + 0 NA Intergenic Intergenic -28124 ENSMUSG00000048978.14 ENSMUSG00000048978 ENSMUST00000126348 Nrsn1 protein_coding Interval_95111 chr2 103982350 103982833 + 0 NA TTS (ENSMUSG00000032698.15) protein_coding-TTS (ENSMUSG00000032698.15) 24596 ENSMUSG00000032698.15 ENSMUSG00000032698 ENSMUST00000133210 Lmo2 protein_coding Interval_17183 chr10 74342699 74343189 + 0 NA intron (ENSMUSG00000052613.16, intron 14 of 31) protein_coding-intron (ENSMUSG00000052613.16, intron 14 of 30) 395888 ENSMUSG00000052613.16 ENSMUSG00000052613 ENSMUST00000192370 Pcdh15 protein_coding Interval_9790 chr1 162357978 162358245 + 0 NA intron (ENSMUSG00000040265.16, intron 2 of 5) protein_coding-intron (ENSMUSG00000040265.16, intron 2 of 19) 42019 ENSMUSG00000089933.1 ENSMUSG00000089933 ENSMUST00000160695 Gm16101 processed_pseudogene Interval_167060 chr9 64956412 64956682 + 0 NA Intergenic Intergenic -4940 ENSMUSG00000034452.7 ENSMUSG00000034452 ENSMUST00000037798 Slc24a1 protein_coding Interval_119833 chr4 140326661 140327637 + 0 NA Intergenic Intergenic -3847 ENSMUSG00000103107.1 ENSMUSG00000103107 ENSMUST00000192212 Gm9867 TEC Interval_112253 chr4 38638601 38639231 + 0 NA intron (ENSMUSG00000085632.1, intron 5 of 5) lincRNA-intron (ENSMUSG00000085632.1, intron 5 of 5) -24893 ENSMUSG00000081427.1 ENSMUSG00000081427 ENSMUST00000122005 Gm12382 processed_pseudogene Interval_72113 chr17 28117829 28118043 + 0 NA Intergenic Intergenic 22170 ENSMUSG00000117189.1 ENSMUSG00000117189 ENSMUST00000232878 Gm49897 TEC Interval_131190 chr5 135698561 135699419 + 0 NA promoter-TSS (ENSMUSG00000080972.1) processed_pseudogene-promoter-TSS (ENSMUSG00000080972.1) 29 ENSMUSG00000080972.1 ENSMUSG00000080972 ENSMUST00000122167 Gm16061 processed_pseudogene Interval_174006 chrX 129332589 129333345 + 0 NA Intergenic Intergenic -27894 ENSMUSG00000087983.1 ENSMUSG00000087983 ENSMUST00000157358 Gm22225 misc_RNA Interval_89670 chr2 24409293 24409807 + 0 NA TTS (ENSMUSG00000026979.16) protein_coding-TTS (ENSMUSG00000026979.16) 22933 ENSMUSG00000026979.16 ENSMUSG00000026979 ENSMUST00000132924 Psd4 protein_coding Interval_143622 chr7 13297277 13298837 + 0 NA intron (ENSMUSG00000056394.17, intron 14 of 28) protein_coding-intron (ENSMUSG00000056394.17, intron 14 of 28) 19202 ENSMUSG00000056394.17 ENSMUSG00000056394 ENSMUST00000131294 Lig1 protein_coding Interval_104873 chr3 77189900 77190525 + 0 NA Intergenic Intergenic -84927 ENSMUSG00000088481.1 ENSMUSG00000088481 ENSMUST00000157856 Gm23644 snoRNA Interval_73328 chr17 36234334 36235778 + 0 NA Intergenic Intergenic 2303 ENSMUSG00000092363.1 ENSMUSG00000092363 ENSMUST00000174722 Gm20391 unprocessed_pseudogene Interval_62198 chr15 88745403 88746462 + 0 NA Intergenic Intergenic -5828 ENSMUSG00000034333.15 ENSMUSG00000034333 ENSMUST00000160975 Zbed4 protein_coding Interval_20025 chr10 112163054 112163876 + 0 NA promoter-TSS (ENSMUSG00000035694.15) protein_coding-promoter-TSS (ENSMUSG00000035694.15) -2211 ENSMUSG00000035694.15 ENSMUSG00000035694 ENSMUST00000132994 Caps2 protein_coding Interval_53653 chr14 60634034 60636009 + 0 NA intron (ENSMUSG00000021990.16, intron 1 of 1) protein_coding-intron (ENSMUSG00000021990.16, intron 1 of 12) -38119 ENSMUSG00000114408.1 ENSMUSG00000114408 ENSMUST00000224210 Gm47810 processed_pseudogene Interval_126505 chr5 89327532 89329114 + 0 NA Intergenic Intergenic 107305 ENSMUSG00000035540.12 ENSMUSG00000035540 ENSMUST00000200534 Gc protein_coding Interval_19126 chr10 94881810 94882068 + 0 NA exon (ENSMUSG00000112736.1, exon 1 of 1) TEC-exon (ENSMUSG00000112736.1, exon 1 of 1) 1853 ENSMUSG00000112736.1 ENSMUSG00000112736 ENSMUST00000220244 Gm48718 TEC Interval_113314 chr4 53403484 53403751 + 0 NA exon (ENSMUSG00000086267.1, exon 1 of 2) lincRNA-exon (ENSMUSG00000086267.1, exon 1 of 2) 413 ENSMUSG00000086267.1 ENSMUSG00000086267 ENSMUST00000154377 Gm12496 lincRNA Interval_117224 chr4 120740020 120740304 + 0 NA intron (ENSMUSG00000028631.7, intron 1 of 5) protein_coding-intron (ENSMUSG00000028631.7, intron 1 of 13) 8450 ENSMUSG00000028631.7 ENSMUSG00000028631 ENSMUST00000129478 Kcnq4 protein_coding Interval_116574 chr4 115819853 115822039 + 0 NA exon (ENSMUSG00000028710.18, exon 5 of 7) protein_coding-exon (ENSMUSG00000028710.18, exon 5 of 7) -7712 ENSMUSG00000028709.3 ENSMUSG00000028709 ENSMUST00000148409 Mob3c protein_coding Interval_43282 chr13 28697723 28698381 + 0 NA intron (ENSMUSG00000085936.7, intron 3 of 7) processed_transcript-intron (ENSMUSG00000085936.7, intron 3 of 5) 12821 ENSMUSG00000099158.1 ENSMUSG00000099158 ENSMUST00000184136 Mir6368 miRNA Interval_105901 chr3 89982578 89983401 + 0 NA Intergenic Intergenic -14331 ENSMUSG00000105082.2 ENSMUSG00000105082 ENSMUST00000199555 Aqp10-ps unprocessed_pseudogene Interval_11533 chr1 182506410 182506888 + 0 NA intron (ENSMUSG00000026509.15, intron 2 of 20) protein_coding-intron (ENSMUSG00000026509.15, intron 2 of 20) 12493 ENSMUSG00000104415.1 ENSMUSG00000104415 ENSMUST00000192742 Gm37069 TEC Interval_117468 chr4 123939743 123940285 + 0 NA Intergenic Intergenic 13780 ENSMUSG00000082515.1 ENSMUSG00000082515 ENSMUST00000118389 Gm12902 processed_pseudogene Interval_109291 chr3 138705702 138706976 + 0 NA Intergenic Intergenic 20645 ENSMUSG00000105838.1 ENSMUSG00000105838 ENSMUST00000197761 4930425O10Rik lincRNA Interval_86518 chr19 41332585 41332960 + 0 NA intron (ENSMUSG00000025017.10, intron 2 of 8) protein_coding-intron (ENSMUSG00000025017.10, intron 2 of 16) 52330 ENSMUSG00000025017.10 ENSMUSG00000025017 ENSMUST00000235978 Pik3ap1 protein_coding Interval_104652 chr3 69142225 69142513 + 0 NA intron (ENSMUSG00000094763.3, intron 1 of 2) lincRNA-intron (ENSMUSG00000094763.3, intron 1 of 2) 11136 ENSMUSG00000094763.3 ENSMUSG00000094763 ENSMUST00000195406 Gm1647 lincRNA Interval_114918 chr4 86930238 86931848 + 0 NA intron (ENSMUSG00000038007.14, intron 1 of 1) protein_coding-intron (ENSMUSG00000038007.14, intron 5 of 5) 352 ENSMUSG00000038007.14 ENSMUSG00000038007 ENSMUST00000135874 Acer2 protein_coding Interval_74440 chr17 50545542 50545879 + 0 NA intron (ENSMUSG00000038910.7, intron 1 of 5) protein_coding-intron (ENSMUSG00000038910.7, intron 1 of 5) -61284 ENSMUSG00000038910.7 ENSMUSG00000038910 ENSMUST00000233823 Plcl2 protein_coding Interval_8483 chr1 139952065 139952407 + 0 NA intron (ENSMUSG00000085867.1, intron 4 of 5) unprocessed_pseudogene-intron (ENSMUSG00000085867.1, intron 4 of 5) -15759 ENSMUSG00000089991.2 ENSMUSG00000089991 ENSMUST00000134229 Gm16332 unprocessed_pseudogene Interval_48481 chr13 99363637 99364046 + 0 NA intron (ENSMUSG00000041632.7, intron 3 of 5) protein_coding-intron (ENSMUSG00000041632.7, intron 3 of 10) 18297 ENSMUSG00000041632.7 ENSMUSG00000041632 ENSMUST00000225973 Mrps27 protein_coding Interval_29874 chr11 87453052 87454110 + 0 NA intron (ENSMUSG00000010342.16, intron 2 of 3) protein_coding-intron (ENSMUSG00000010342.16, intron 2 of 30) 4954 ENSMUSG00000099291.1 ENSMUSG00000099291 ENSMUST00000093738 Rnu3b3 snoRNA Interval_32132 chr11 105449193 105450403 + 0 NA intron (ENSMUSG00000078627.9, intron 3 of 11) protein_coding-intron (ENSMUSG00000078627.9, intron 3 of 11) 15353 ENSMUSG00000086089.1 ENSMUSG00000086089 ENSMUST00000155987 Gm11640 antisense Interval_38350 chr12 77656502 77657075 + 0 NA Intergenic Intergenic -26273 ENSMUSG00000111903.1 ENSMUSG00000111903 ENSMUST00000219952 4930458K08Rik lincRNA Interval_123794 chr5 35557698 35558428 + 0 NA intron (ENSMUSG00000029097.11, intron 10 of 10) protein_coding-intron (ENSMUSG00000029097.11, intron 10 of 10) 3879 ENSMUSG00000083907.2 ENSMUSG00000083907 ENSMUST00000119494 Plk-ps1 processed_pseudogene Interval_24978 chr11 42326148 42326540 + 0 NA Intergenic Intergenic -5293 ENSMUSG00000020428.13 ENSMUSG00000020428 ENSMUST00000109286 Gabra6 protein_coding Interval_22798 chr11 15929869 15930479 + 0 NA Intergenic Intergenic -107619 ENSMUSG00000104323.1 ENSMUSG00000104323 ENSMUST00000193500 Gm37319 TEC Interval_71592 chr17 24736083 24737035 + 0 NA promoter-TSS (ENSMUSG00000075705.12) protein_coding-promoter-TSS (ENSMUSG00000075705.12) -83 ENSMUSG00000075705.12 ENSMUSG00000075705 ENSMUST00000101800 Msrb1 protein_coding Interval_26999 chr11 62300553 62300740 + 0 NA intron (ENSMUSG00000042298.18, intron 5 of 7) protein_coding-intron (ENSMUSG00000042298.18, intron 7 of 9) 4524 ENSMUSG00000081340.1 ENSMUSG00000081340 ENSMUST00000119805 Gm12275 processed_pseudogene Interval_19023 chr10 93854916 93856129 + 0 NA intron (ENSMUSG00000020020.8, intron 4 of 5) protein_coding-intron (ENSMUSG00000020020.8, intron 4 of 5) 21704 ENSMUSG00000020020.8 ENSMUSG00000020020 ENSMUST00000216224 Usp44 protein_coding Interval_68001 chr16 62974712 62975064 + 0 NA Intergenic Intergenic -28550 ENSMUSG00000116574.1 ENSMUSG00000116574 ENSMUST00000231727 Gm18870 lincRNA Interval_74496 chr17 52051787 52051986 + 0 NA intron (ENSMUSG00000100150.2, intron 2 of 2) lincRNA-intron (ENSMUSG00000100150.2, intron 1 of 3) 42919 ENSMUSG00000117170.1 ENSMUSG00000117170 ENSMUST00000233260 Gm19197 processed_pseudogene Interval_127491 chr5 104448338 104449001 + 0 NA Intergenic Intergenic 13527 ENSMUSG00000029304.14 ENSMUSG00000029304 ENSMUST00000112747 Spp1 protein_coding Interval_106326 chr3 95394344 95394622 + 0 NA intron (ENSMUSG00000105734.1, intron 1 of 1) protein_coding-intron (ENSMUSG00000105734.1, intron 1 of 1) 8358 ENSMUSG00000105734.1 ENSMUSG00000105734 ENSMUST00000196239 4930558C23Rik protein_coding Interval_126332 chr5 86768164 86768474 + 0 NA intron (ENSMUSG00000104937.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000104937.1, intron 1 of 2) 14714 ENSMUSG00000104937.1 ENSMUSG00000104937 ENSMUST00000196789 Gm43057 lincRNA Interval_97731 chr2 143602846 143604375 + 0 NA intron (ENSMUSG00000027419.9, intron 2 of 11) protein_coding-intron (ENSMUSG00000027419.9, intron 2 of 11) 57339 ENSMUSG00000027419.9 ENSMUSG00000027419 ENSMUST00000124751 Pcsk2 protein_coding Interval_77420 chr17 88580362 88580694 + 0 NA exon (ENSMUSG00000034709.8, exon 19 of 22) protein_coding-exon (ENSMUSG00000034709.8, exon 19 of 22) 18411 ENSMUSG00000034709.8 ENSMUSG00000034709 ENSMUST00000185400 Ppp1r21 protein_coding Interval_18996 chr10 93640622 93642529 + 0 NA intron (ENSMUSG00000020019.4, intron 1 of 9) protein_coding-intron (ENSMUSG00000020019.4, intron 1 of 9) 894 ENSMUSG00000020019.4 ENSMUSG00000020019 ENSMUST00000020204 Ntn4 protein_coding Interval_38253 chr12 76663558 76663837 + 0 NA intron (ENSMUSG00000021061.15, intron 1 of 31) protein_coding-intron (ENSMUSG00000021061.15, intron 1 of 35) -28283 ENSMUSG00000088356.1 ENSMUSG00000088356 ENSMUST00000157731 Gm24010 misc_RNA Interval_157544 chr8 71324554 71325167 + 0 NA intron (ENSMUSG00000004677.17, intron 7 of 39) protein_coding-intron (ENSMUSG00000004677.17, intron 7 of 39) -42357 ENSMUSG00000002395.14 ENSMUSG00000002395 ENSMUST00000137137 Use1 protein_coding Interval_150556 chr7 112400063 112400743 + 0 NA intron (ENSMUSG00000038244.14, intron 10 of 12) protein_coding-intron (ENSMUSG00000038244.14, intron 7 of 9) -27502 ENSMUSG00000030770.15 ENSMUSG00000030770 ENSMUST00000126047 Parva protein_coding Interval_134085 chr6 19135143 19135431 + 0 NA Intergenic Intergenic 15818 ENSMUSG00000107349.1 ENSMUSG00000107349 ENSMUST00000201932 Gm6655 processed_pseudogene Interval_107023 chr3 103026282 103026900 + 0 NA intron (ENSMUSG00000068823.10, intron 1 of 18) protein_coding-intron (ENSMUSG00000068823.10, intron 1 of 19) -13408 ENSMUSG00000068823.10 ENSMUSG00000068823 ENSMUST00000197844 Csde1 protein_coding Interval_22093 chr11 6305027 6305844 + 0 NA intron (ENSMUSG00000020456.17, intron 2 of 2) protein_coding-intron (ENSMUSG00000020456.17, intron 2 of 22) 13450 ENSMUSG00000020456.17 ENSMUSG00000020456 ENSMUST00000081894 Ogdh protein_coding Interval_124295 chr5 43698900 43699142 + 0 NA intron (ENSMUSG00000039765.15, intron 1 of 10) protein_coding-intron (ENSMUSG00000039765.15, intron 14 of 39) 26732 ENSMUSG00000039765.15 ENSMUSG00000039765 ENSMUST00000127355 Cc2d2a protein_coding Interval_108700 chr3 130451381 130451590 + 0 NA intron (ENSMUSG00000058897.18, intron 7 of 37) protein_coding-intron (ENSMUSG00000058897.18, intron 7 of 37) -88004 ENSMUSG00000105011.1 ENSMUSG00000105011 ENSMUST00000196743 Gm43210 TEC Interval_27325 chr11 66360637 66360867 + 0 NA intron (ENSMUSG00000053930.13, intron 2 of 4) protein_coding-intron (ENSMUSG00000053930.13, intron 2 of 4) 142062 ENSMUSG00000053930.13 ENSMUSG00000053930 ENSMUST00000134562 Shisa6 protein_coding Interval_12614 chr10 3920014 3920242 + 0 NA TTS (ENSMUSG00000040624.18) protein_coding-TTS (ENSMUSG00000040624.18) 14749 ENSMUSG00000089392.1 ENSMUSG00000089392 ENSMUST00000158767 Gm23023 rRNA Interval_68904 chr16 88225110 88225867 + 0 NA intron (ENSMUSG00000022935.16, intron 1 of 16) protein_coding-intron (ENSMUSG00000022935.16, intron 1 of 15) 64376 ENSMUSG00000022935.16 ENSMUSG00000022935 ENSMUST00000210910 Grik1 protein_coding Interval_17117 chr10 71428403 71428712 + 0 NA intron (ENSMUSG00000060733.13, intron 1 of 1) protein_coding-intron (ENSMUSG00000060733.13, intron 2 of 2) -54524 ENSMUSG00000112608.1 ENSMUSG00000112608 ENSMUST00000217831 Gm46233 processed_pseudogene Interval_26672 chr11 59596046 59596656 + 0 NA Intergenic Intergenic -3062 ENSMUSG00000048919.5 ENSMUSG00000048919 ENSMUST00000061293 Olfr223 protein_coding Interval_95376 chr2 107175478 107175862 + 0 NA Intergenic Intergenic -51710 ENSMUSG00000083181.1 ENSMUSG00000083181 ENSMUST00000120945 Gm13903 unprocessed_pseudogene Interval_57964 chr15 25767834 25768480 + 0 NA promoter-TSS (ENSMUSG00000022272.17) protein_coding-promoter-TSS (ENSMUSG00000022272.17) -399 ENSMUSG00000022272.17 ENSMUSG00000022272 ENSMUST00000145587 Myo10 protein_coding Interval_152949 chr7 139978138 139979265 + 0 NA promoter-TSS (ENSMUSG00000073795.11) protein_coding-promoter-TSS (ENSMUSG00000073795.11) 18 ENSMUSG00000073795.11 ENSMUSG00000073795 ENSMUST00000121412 Spef1l protein_coding Interval_143842 chr7 16657632 16658214 + 0 NA promoter-TSS (ENSMUSG00000108307.1) transcribed_unprocessed_pseudogene-promoter-TSS (ENSMUSG00000108307.1) -6143 ENSMUSG00000108307.1 ENSMUSG00000108307 ENSMUST00000206683 Ceacam-ps1 transcribed_unprocessed_pseudogene Interval_58800 chr15 38143254 38143895 + 0 NA Intergenic Intergenic 58643 ENSMUSG00000115680.1 ENSMUSG00000115680 ENSMUST00000227576 Gm35167 lincRNA Interval_18698 chr10 89415469 89415987 + 0 NA intron (ENSMUSG00000074802.11, intron 10 of 11) protein_coding-intron (ENSMUSG00000074802.11, intron 10 of 10) 18114 ENSMUSG00000074802.11 ENSMUSG00000074802 ENSMUST00000219073 Gas2l3 protein_coding Interval_57866 chr15 23490851 23491920 + 0 NA TTS (ENSMUSG00000115193.1) processed_pseudogene-TTS (ENSMUSG00000115193.1) 1494 ENSMUSG00000115193.1 ENSMUSG00000115193 ENSMUST00000227365 Gm6533 processed_pseudogene Interval_119850 chr4 140499230 140501537 + 0 NA Intergenic Intergenic -54219 ENSMUSG00000118416.1 ENSMUSG00000118416 ENSMUST00000238366 Gm50453 unitary_pseudogene Interval_121683 chr5 5261836 5262206 + 0 NA intron (ENSMUSG00000028926.15, intron 2 of 2) protein_coding-intron (ENSMUSG00000028926.15, intron 2 of 14) 44981 ENSMUSG00000106202.1 ENSMUSG00000106202 ENSMUST00000198021 Gm43727 sense_intronic Interval_78133 chr18 9010911 9011101 + 0 NA Intergenic Intergenic 43262 ENSMUSG00000117549.1 ENSMUSG00000117549 ENSMUST00000234292 Gm7523 processed_pseudogene Interval_20474 chr10 117810652 117812180 + 0 NA Intergenic Intergenic 7124 ENSMUSG00000052681.8 ENSMUSG00000052681 ENSMUST00000220214 Rap1b protein_coding Interval_127122 chr5 100429035 100430232 + 0 NA promoter-TSS (ENSMUSG00000097772.7) lincRNA-promoter-TSS (ENSMUSG00000097772.7) -93 ENSMUSG00000106391.1 ENSMUSG00000106391 ENSMUST00000197921 Gm42690 TEC Interval_103898 chr3 54723213 54724413 + 0 NA intron (ENSMUSG00000027751.13, intron 7 of 9) protein_coding-intron (ENSMUSG00000027751.13, intron 7 of 9) -9460 ENSMUSG00000094487.1 ENSMUSG00000094487 ENSMUST00000178832 Gm21958 protein_coding Interval_31881 chr11 103564072 103565286 + 0 NA intron (ENSMUSG00000034239.14, intron 7 of 13) protein_coding-intron (ENSMUSG00000034239.14, intron 7 of 13) 36426 ENSMUSG00000081676.1 ENSMUSG00000081676 ENSMUST00000119578 Gm11643 processed_pseudogene Interval_169365 chr9 96725469 96726446 + 0 NA intron (ENSMUSG00000040433.16, intron 4 of 5) protein_coding-intron (ENSMUSG00000040433.16, intron 1 of 2) 20129 ENSMUSG00000102097.1 ENSMUSG00000102097 ENSMUST00000186821 A930006L05Rik antisense Interval_57718 chr15 16656242 16657144 + 0 NA Intergenic Intergenic -56131 ENSMUSG00000115670.1 ENSMUSG00000115670 ENSMUST00000228469 Gm2611 processed_pseudogene Interval_65240 chr16 20778257 20778644 + 0 NA Intergenic Intergenic 19323 ENSMUSG00000116776.1 ENSMUSG00000116776 ENSMUST00000232027 Gm46544 processed_pseudogene Interval_171422 chr9 118180333 118181234 + 0 NA Intergenic Intergenic 30552 ENSMUSG00000097402.1 ENSMUSG00000097402 ENSMUST00000181824 Gm17399 lincRNA Interval_162349 chr8 127324590 127325901 + 0 NA intron (ENSMUSG00000025812.18, intron 5 of 15) protein_coding-intron (ENSMUSG00000025812.18, intron 5 of 23) 153841 ENSMUSG00000025812.18 ENSMUSG00000025812 ENSMUST00000159940 Pard3 protein_coding Interval_37651 chr12 70838275 70838806 + 0 NA intron (ENSMUSG00000048285.9, intron 1 of 11) protein_coding-intron (ENSMUSG00000048285.9, intron 1 of 13) 12851 ENSMUSG00000048285.9 ENSMUSG00000048285 ENSMUST00000222045 Frmd6 protein_coding Interval_37173 chr12 59176991 59177230 + 0 NA intron (ENSMUSG00000021000.17, intron 25 of 29) protein_coding-intron (ENSMUSG00000021000.17, intron 20 of 24) 27326 ENSMUSG00000035329.7 ENSMUSG00000035329 ENSMUST00000161351 Fbxo33 protein_coding Interval_87232 chr19 47084627 47085488 + 0 NA TTS (ENSMUSG00000071528.4) protein_coding-TTS (ENSMUSG00000071528.4) 5577 ENSMUSG00000071528.4 ENSMUSG00000071528 ENSMUST00000236170 Atp5md protein_coding Interval_119654 chr4 139030804 139031082 + 0 NA intron (ENSMUSG00000041143.16, intron 14 of 16) protein_coding-intron (ENSMUSG00000041143.16, intron 13 of 15) 44627 ENSMUSG00000028747.10 ENSMUSG00000028747 ENSMUST00000068036 Htr6 protein_coding Interval_149788 chr7 101508816 101509324 + 0 NA intron (ENSMUSG00000110195.1, intron 25 of 30) protein_coding-intron (ENSMUSG00000030653.17, intron 26 of 31) 29260 ENSMUSG00000110301.1 ENSMUSG00000110301 ENSMUST00000209330 Gm35363 lincRNA Interval_138822 chr6 92214082 92215272 + 0 NA promoter-TSS (ENSMUSG00000014550.14) protein_coding-promoter-TSS (ENSMUSG00000014550.14) -20549 ENSMUSG00000014550.14 ENSMUSG00000014550 ENSMUST00000138041 Rbsn protein_coding Interval_15588 chr10 51990985 51991569 + 0 NA Intergenic Intergenic -1698 ENSMUSG00000112557.1 ENSMUSG00000112557 ENSMUST00000219916 Gm47626 processed_pseudogene Interval_80690 chr18 46341706 46343071 + 0 NA Intergenic Intergenic -1959 ENSMUSG00000117742.1 ENSMUSG00000117742 ENSMUST00000236411 4930415P13Rik TEC Interval_56987 chr15 3218664 3218962 + 0 NA exon (ENSMUSG00000114999.1, exon 1 of 1) processed_pseudogene-exon (ENSMUSG00000114999.1, exon 1 of 1) 885 ENSMUSG00000114999.1 ENSMUSG00000114999 ENSMUST00000227053 Gm7962 processed_pseudogene Interval_101605 chr3 7612274 7613663 + 0 NA promoter-TSS (ENSMUSG00000040329.14) protein_coding-promoter-TSS (ENSMUSG00000040329.14) 263 ENSMUSG00000097804.1 ENSMUSG00000097804 ENSMUST00000181286 Gm16685 antisense Interval_51689 chr14 31395362 31396040 + 0 NA intron (ENSMUSG00000021892.14, intron 3 of 10) protein_coding-intron (ENSMUSG00000021892.14, intron 3 of 8) 11684 ENSMUSG00000021892.14 ENSMUSG00000021892 ENSMUST00000147586 Sh3bp5 protein_coding Interval_28744 chr11 78037761 78038607 + 0 NA TTS (ENSMUSG00000020834.17) protein_coding-TTS (ENSMUSG00000020834.17) 253 ENSMUSG00000061981.14 ENSMUSG00000061981 ENSMUST00000136353 Flot2 protein_coding Interval_104733 chr3 69907632 69908247 + 0 NA Intergenic Intergenic 47743 ENSMUSG00000103549.1 ENSMUSG00000103549 ENSMUST00000194028 Gm17895 processed_pseudogene Interval_14339 chr10 31034750 31035027 + 0 NA intron (ENSMUSG00000111778.1, intron 3 of 3) lincRNA-intron (ENSMUSG00000111778.1, intron 4 of 4) 31354 ENSMUSG00000111778.1 ENSMUSG00000111778 ENSMUST00000217645 Gm30676 lincRNA Interval_43168 chr13 24816201 24817328 + 0 NA TTS (ENSMUSG00000019132.11) protein_coding-TTS (ENSMUSG00000019132.11) -5196 ENSMUSG00000064811.1 ENSMUSG00000064811 ENSMUST00000082877 Gm22358 snoRNA Interval_5073 chr1 84805994 84807124 + 0 NA TTS (ENSMUSG00000103505.1) TEC-TTS (ENSMUSG00000103505.1) 2631 ENSMUSG00000103505.1 ENSMUSG00000103505 ENSMUST00000194417 Gm38374 TEC Interval_8361 chr1 137946697 137947358 + 0 NA intron (ENSMUSG00000098243.3, intron 2 of 2) processed_transcript-intron (ENSMUSG00000098243.3, intron 2 of 2) -2395 ENSMUSG00000103427.1 ENSMUSG00000103427 ENSMUST00000194483 Gm37534 TEC Interval_35443 chr12 21790008 21790791 + 0 NA Intergenic Intergenic -13692 ENSMUSG00000091105.1 ENSMUSG00000091105 ENSMUST00000164169 Mrto4-ps2 processed_pseudogene Interval_24219 chr11 31606235 31606567 + 0 NA Intergenic Intergenic 65326 ENSMUSG00000044502.16 ENSMUSG00000044502 ENSMUST00000109415 Bod1 protein_coding Interval_21397 chr10 128358352 128358534 + 0 NA exon (ENSMUSG00000005683.8, exon 7 of 11) protein_coding-exon (ENSMUSG00000005683.8, exon 7 of 11) 9202 ENSMUSG00000089313.2 ENSMUSG00000089313 ENSMUST00000158688 Gm23182 snoRNA Interval_75904 chr17 72898724 72899359 + 0 NA Intergenic Intergenic -22147 ENSMUSG00000024063.13 ENSMUSG00000024063 ENSMUST00000148556 Lbh protein_coding Interval_94100 chr2 84086505 84087625 + 0 NA Intergenic Intergenic -52452 ENSMUSG00000084359.1 ENSMUSG00000084359 ENSMUST00000120774 Gm13692 processed_pseudogene Interval_140832 chr6 122077274 122077455 + 0 NA intron (ENSMUSG00000030131.8, intron 25 of 34) protein_coding-intron (ENSMUSG00000030131.8, intron 25 of 34) -42729 ENSMUSG00000108208.1 ENSMUSG00000108208 ENSMUST00000204290 Gm44184 processed_pseudogene Interval_161842 chr8 123137749 123138183 + 0 NA intron (ENSMUSG00000092329.1, intron 1 of 15) protein_coding-intron (ENSMUSG00000092329.1, intron 1 of 15) 7860 ENSMUSG00000098582.1 ENSMUSG00000098582 ENSMUST00000184815 Mir7080 miRNA Interval_106594 chr3 97577766 97578505 + 0 NA intron (ENSMUSG00000028089.5, intron 14 of 15) protein_coding-intron (ENSMUSG00000028089.5, intron 15 of 22) -31797 ENSMUSG00000105004.1 ENSMUSG00000105004 ENSMUST00000198613 Gm43075 TEC Interval_99841 chr2 165245535 165246703 + 0 NA Intergenic Intergenic 24057 ENSMUSG00000087800.1 ENSMUSG00000087800 ENSMUST00000157175 Gm25569 snoRNA Interval_122681 chr5 24631660 24631879 + 0 NA Intergenic Intergenic -8633 ENSMUSG00000028949.13 ENSMUSG00000028949 ENSMUST00000199393 Smarcd3 protein_coding Interval_2503 chr1 39812290 39812617 + 0 NA Intergenic Intergenic -7121 ENSMUSG00000091937.3 ENSMUSG00000091937 ENSMUST00000171319 Gm3646 protein_coding Interval_38800 chr12 82433315 82433915 + 0 NA intron (ENSMUSG00000042700.16, intron 16 of 21) protein_coding-intron (ENSMUSG00000042700.16, intron 15 of 20) 62922 ENSMUSG00000094374.2 ENSMUSG00000094374 ENSMUST00000179295 Gm5435 processed_pseudogene Interval_5042 chr1 84615992 84616885 + 0 NA intron (ENSMUSG00000036766.12, intron 1 of 4) protein_coding-intron (ENSMUSG00000036766.12, intron 1 of 12) 7403 ENSMUSG00000036766.12 ENSMUSG00000036766 ENSMUST00000191546 Dner protein_coding Interval_97572 chr2 139990618 139990950 + 0 NA intron (ENSMUSG00000039033.11, intron 3 of 4) protein_coding-intron (ENSMUSG00000039033.11, intron 6 of 13) 51430 ENSMUSG00000039033.11 ENSMUSG00000039033 ENSMUST00000124949 Tasp1 protein_coding Interval_65047 chr16 18695969 18697078 + 0 NA Intergenic Intergenic -14307 ENSMUSG00000116825.1 ENSMUSG00000116825 ENSMUST00000231787 Rps2-ps7 processed_pseudogene Interval_138242 chr6 86545154 86545663 + 0 NA intron (ENSMUSG00000097048.7, intron 3 of 3) antisense-intron (ENSMUSG00000097048.7, intron 2 of 3) 17934 ENSMUSG00000097048.7 ENSMUSG00000097048 ENSMUST00000204663 1600020E01Rik antisense Interval_128330 chr5 112575615 112577667 + 0 NA intron (ENSMUSG00000058153.15, intron 1 of 14) protein_coding-intron (ENSMUSG00000058153.15, intron 1 of 16) 227 ENSMUSG00000058153.15 ENSMUSG00000058153 ENSMUST00000212758 Sez6l protein_coding Interval_141128 chr6 125152808 125153099 + 0 NA promoter-TSS (ENSMUSG00000038271.17) protein_coding-promoter-TSS (ENSMUSG00000038271.17) 3425 ENSMUSG00000038271.17 ENSMUSG00000038271 ENSMUST00000150474 Iffo1 protein_coding Interval_1425 chr1 23033671 23034112 + 0 NA Intergenic Intergenic -46766 ENSMUSG00000101468.1 ENSMUSG00000101468 ENSMUST00000190510 Gm7761 processed_pseudogene Interval_130982 chr5 134393658 134393879 + 0 NA intron (ENSMUSG00000023079.14, intron 9 of 27) protein_coding-intron (ENSMUSG00000023079.14, intron 9 of 30) -16744 ENSMUSG00000023079.14 ENSMUSG00000023079 ENSMUST00000201647 Gtf2ird1 protein_coding Interval_123734 chr5 35013700 35014401 + 0 NA promoter-TSS (ENSMUSG00000029101.16) protein_coding-promoter-TSS (ENSMUSG00000029101.16) -270 ENSMUSG00000029101.16 ENSMUSG00000029101 ENSMUST00000150139 Rgs12 protein_coding Interval_55142 chr14 78604099 78604448 + 0 NA TTS (ENSMUSG00000084447.1) snoRNA-TTS (ENSMUSG00000084447.1) 563 ENSMUSG00000084447.1 ENSMUSG00000084447 ENSMUST00000122498 Gm26251 snoRNA Interval_37731 chr12 71482294 71483054 + 0 NA intron (ENSMUSG00000113441.1, intron 5 of 5) lincRNA-intron (ENSMUSG00000113441.1, intron 5 of 5) -5611 ENSMUSG00000113630.1 ENSMUSG00000113630 ENSMUST00000220948 4930404H11Rik lincRNA Interval_8804 chr1 151289626 151290216 + 0 NA Intergenic Intergenic -29007 ENSMUSG00000088498.1 ENSMUSG00000088498 ENSMUST00000157873 Gm24402 snRNA Interval_9646 chr1 160719109 160719368 + 0 NA intron (ENSMUSG00000026721.16, intron 8 of 12) protein_coding-intron (ENSMUSG00000026721.16, intron 7 of 20) 7443 ENSMUSG00000103200.1 ENSMUSG00000103200 ENSMUST00000193191 Gm37328 sense_intronic Interval_150139 chr7 107301811 107302273 + 0 NA Intergenic Intergenic 17721 ENSMUSG00000076951.1 ENSMUSG00000076951 ENSMUST00000103763 Gm24932 miRNA Interval_115211 chr4 94476582 94477632 + 0 NA promoter-TSS (ENSMUSG00000087128.7) processed_transcript-promoter-TSS (ENSMUSG00000087128.7) 73 ENSMUSG00000087128.7 ENSMUSG00000087128 ENSMUST00000127678 Gm12655 processed_transcript Interval_78490 chr18 13649100 13649463 + 0 NA Intergenic Intergenic -47881 ENSMUSG00000117608.1 ENSMUSG00000117608 ENSMUST00000234112 AC103362.1 lincRNA Interval_156907 chr8 61584950 61585325 + 0 NA intron (ENSMUSG00000058056.16, intron 10 of 21) protein_coding-intron (ENSMUSG00000058056.16, intron 10 of 19) -69237 ENSMUSG00000058056.16 ENSMUSG00000058056 ENSMUST00000123523 Palld protein_coding Interval_125806 chr5 74296941 74297298 + 0 NA intron (ENSMUSG00000062110.14, intron 5 of 7) protein_coding-intron (ENSMUSG00000062110.14, intron 5 of 8) -8509 ENSMUSG00000062110.14 ENSMUSG00000062110 ENSMUST00000123203 Scfd2 protein_coding Interval_82209 chr18 69125281 69126372 + 0 NA Intergenic Intergenic 48294 ENSMUSG00000088166.1 ENSMUSG00000088166 ENSMUST00000157541 Gm23536 rRNA Interval_28384 chr11 75530436 75532674 + 0 NA promoter-TSS (ENSMUSG00000038178.16) protein_coding-promoter-TSS (ENSMUSG00000038178.16) -557 ENSMUSG00000038178.16 ENSMUSG00000038178 ENSMUST00000155981 Slc43a2 protein_coding Interval_80521 chr18 43299490 43299662 + 0 NA intron (ENSMUSG00000039954.9, intron 7 of 12) protein_coding-intron (ENSMUSG00000039954.9, intron 7 of 12) 73647 ENSMUSG00000024501.20 ENSMUSG00000024501 ENSMUST00000118071 Dpysl3 protein_coding Interval_124508 chr5 49817718 49817988 + 0 NA Intergenic Intergenic 84449 ENSMUSG00000105540.1 ENSMUSG00000105540 ENSMUST00000196623 Gm7988 processed_pseudogene Interval_131267 chr5 136076099 136076839 + 0 NA Intergenic Intergenic -14633 ENSMUSG00000004952.13 ENSMUSG00000004952 ENSMUST00000130598 Rasa4 protein_coding Interval_2323 chr1 38051743 38053053 + 0 NA TTS (ENSMUSG00000026082.11) protein_coding-TTS (ENSMUSG00000026082.11) 7764 ENSMUSG00000026083.12 ENSMUSG00000026083 ENSMUST00000195664 Eif5b protein_coding Interval_120263 chr4 145022226 145022767 + 0 NA intron (ENSMUSG00000020220.16, intron 47 of 51) protein_coding-intron (ENSMUSG00000020220.16, intron 63 of 67) -63648 ENSMUSG00000103911.1 ENSMUSG00000103911 ENSMUST00000193467 Gm38074 TEC Interval_63956 chr16 4789332 4790726 + 0 NA promoter-TSS (ENSMUSG00000004071.13) protein_coding-promoter-TSS (ENSMUSG00000004071.13) -94 ENSMUSG00000004071.13 ENSMUSG00000004071 ENSMUST00000229452 Cdip1 protein_coding Interval_35987 chr12 33133523 33134034 + 0 NA TTS (ENSMUSG00000052125.16) bidirectional_promoter_lncRNA-TTS (ENSMUSG00000052125.16) 13818 ENSMUSG00000052125.16 ENSMUSG00000052125 ENSMUST00000172344 F730043M19Rik bidirectional_promoter_lncRNA Interval_123258 chr5 30940082 30940337 + 0 NA intron (ENSMUSG00000029161.7, intron 1 of 1) protein_coding-intron (ENSMUSG00000029161.7, intron 1 of 5) 5197 ENSMUSG00000029161.7 ENSMUSG00000029161 ENSMUST00000202627 Cgref1 protein_coding Interval_96745 chr2 127655024 127657022 + 0 NA intron (ENSMUSG00000027375.14, intron 1 of 3) protein_coding-intron (ENSMUSG00000027375.14, intron 1 of 2) 672 ENSMUSG00000027375.14 ENSMUSG00000027375 ENSMUST00000028853 Mal protein_coding Interval_9461 chr1 157411557 157413041 + 0 NA promoter-TSS (ENSMUSG00000049881.13) transcribed_processed_pseudogene-promoter-TSS (ENSMUSG00000049881.13) -679 ENSMUSG00000049881.13 ENSMUSG00000049881 ENSMUST00000189791 2810025M15Rik transcribed_processed_pseudogene Interval_85220 chr19 23940743 23941791 + 0 NA intron (ENSMUSG00000024897.9, intron 9 of 11) protein_coding-intron (ENSMUSG00000024897.9, intron 10 of 12) 327 ENSMUSG00000118340.1 ENSMUSG00000118340 ENSMUST00000236338 Gm50301 antisense Interval_120549 chr4 149282233 149283221 + 0 NA intron (ENSMUSG00000063077.15, intron 2 of 49) protein_coding-intron (ENSMUSG00000063077.15, intron 2 of 20) 24965 ENSMUSG00000063077.15 ENSMUSG00000063077 ENSMUST00000132072 Kif1b protein_coding Interval_41072 chr12 110976754 110977451 + 0 NA TTS (ENSMUSG00000037904.14) protein_coding-TTS (ENSMUSG00000037904.14) 1153 ENSMUSG00000037904.14 ENSMUSG00000037904 ENSMUST00000144882 Ankrd9 protein_coding Interval_103093 chr3 35184897 35185135 + 0 NA Intergenic Intergenic 91115 ENSMUSG00000105651.1 ENSMUSG00000105651 ENSMUST00000198307 1700017M07Rik lincRNA Interval_122465 chr5 23154226 23154688 + 0 NA intron (ENSMUSG00000106379.1, intron 2 of 2) protein_coding-intron (ENSMUSG00000106379.1, intron 2 of 2) 69339 ENSMUSG00000104866.1 ENSMUSG00000104866 ENSMUST00000199085 Gm42948 antisense Interval_87381 chr19 48122316 48122804 + 0 NA intron (ENSMUSG00000117690.1, intron 2 of 2) lincRNA-intron (ENSMUSG00000117690.1, intron 2 of 2) 5212 ENSMUSG00000117690.1 ENSMUSG00000117690 ENSMUST00000237618 Gm50430 lincRNA Interval_133963 chr6 16791487 16791664 + 0 NA Intergenic Intergenic 14051 ENSMUSG00000107022.1 ENSMUSG00000107022 ENSMUST00000201757 Gm36669 lincRNA Interval_125567 chr5 71555400 71557043 + 0 NA Intergenic Intergenic -8016 ENSMUSG00000049387.10 ENSMUSG00000049387 ENSMUST00000050129 Cox7b2 protein_coding Interval_59864 chr15 60096949 60097385 + 0 NA Intergenic Intergenic 12379 ENSMUSG00000077511.1 ENSMUSG00000077511 ENSMUST00000104323 Gm25875 snRNA Interval_169630 chr9 99556944 99557129 + 0 NA intron (ENSMUSG00000032468.11, intron 1 of 1) protein_coding-intron (ENSMUSG00000032468.11, intron 1 of 21) 11627 ENSMUSG00000032468.11 ENSMUSG00000032468 ENSMUST00000191370 Armc8 protein_coding Interval_42249 chr13 10941976 10942259 + 0 NA Intergenic Intergenic -32306 ENSMUSG00000113673.1 ENSMUSG00000113673 ENSMUST00000221075 Gm47486 lincRNA Interval_20331 chr10 116930284 116931743 + 0 NA intron (ENSMUSG00000064181.6, intron 3 of 10) protein_coding-intron (ENSMUSG00000064181.6, intron 3 of 9) -19554 ENSMUSG00000112627.1 ENSMUSG00000112627 ENSMUST00000217853 4933412E12Rik bidirectional_promoter_lncRNA Interval_37880 chr12 72771063 72771765 + 0 NA intron (ENSMUSG00000021096.11, intron 1 of 2) protein_coding-intron (ENSMUSG00000021096.11, intron 1 of 5) 10099 ENSMUSG00000021096.11 ENSMUSG00000021096 ENSMUST00000222920 Ppm1a protein_coding Interval_143463 chr7 6995298 6995889 + 0 NA promoter-TSS (ENSMUSG00000070837.5) protein_coding-promoter-TSS (ENSMUSG00000070837.5) 208 ENSMUSG00000070837.5 ENSMUSG00000070837 ENSMUST00000207660 Aurkc protein_coding Interval_32659 chr11 109475899 109476610 + 0 NA intron (ENSMUSG00000020604.13, intron 1 of 3) protein_coding-intron (ENSMUSG00000020604.13, intron 1 of 13) 2880 ENSMUSG00000020604.13 ENSMUSG00000020604 ENSMUST00000106696 Arsg protein_coding Interval_67199 chr16 44357752 44358541 + 0 NA intron (ENSMUSG00000043065.12, intron 2 of 7) protein_coding-intron (ENSMUSG00000043065.12, intron 4 of 17) 10732 ENSMUSG00000043065.12 ENSMUSG00000043065 ENSMUST00000126228 Spice1 protein_coding Interval_103787 chr3 52967009 52967681 + 0 NA Intergenic Intergenic -6979 ENSMUSG00000103886.1 ENSMUSG00000103886 ENSMUST00000194234 Gm37007 processed_pseudogene Interval_149203 chr7 96262437 96262929 + 0 NA intron (ENSMUSG00000048078.16, intron 1 of 32) protein_coding-intron (ENSMUSG00000048078.16, intron 1 of 32) 13259 ENSMUSG00000076143.1 ENSMUSG00000076143 ENSMUST00000102189 Mir708 miRNA Interval_160477 chr8 109847186 109847423 + 0 NA intron (ENSMUSG00000031731.16, intron 2 of 2) protein_coding-intron (ENSMUSG00000031731.16, intron 13 of 22) -6615 ENSMUSG00000084507.1 ENSMUSG00000084507 ENSMUST00000122558 Gm25321 snRNA Interval_134646 chr6 30143113 30144145 + 0 NA TTS (ENSMUSG00000065343.1) misc_RNA-TTS (ENSMUSG00000065343.1) 498 ENSMUSG00000065343.1 ENSMUSG00000065343 ENSMUST00000083409 Gm25580 misc_RNA Interval_9886 chr1 163812886 163813076 + 0 NA intron (ENSMUSG00000026585.13, intron 5 of 20) protein_coding-intron (ENSMUSG00000026585.13, intron 5 of 19) 33398 ENSMUSG00000026585.13 ENSMUSG00000026585 ENSMUST00000027877 Kifap3 protein_coding Interval_54656 chr14 72978425 72978909 + 0 NA TTS (ENSMUSG00000115085.1) processed_pseudogene-TTS (ENSMUSG00000115085.1) 1237 ENSMUSG00000115085.1 ENSMUSG00000115085 ENSMUST00000226196 Gm9198 processed_pseudogene Interval_2836 chr1 46135253 46135623 + 0 NA intron (ENSMUSG00000041144.12, intron 16 of 64) protein_coding-intron (ENSMUSG00000041144.12, intron 17 of 65) 68585 ENSMUSG00000041144.12 ENSMUSG00000041144 ENSMUST00000185879 Dnah7b protein_coding Interval_98413 chr2 152180199 152180825 + 0 NA Intergenic Intergenic 5170 ENSMUSG00000081087.1 ENSMUSG00000081087 ENSMUST00000117430 Rps15a-ps7 processed_pseudogene Interval_60573 chr15 75216180 75216616 + 0 NA promoter-TSS (ENSMUSG00000047728.13) protein_coding-promoter-TSS (ENSMUSG00000047728.13) 20 ENSMUSG00000047728.13 ENSMUSG00000047728 ENSMUST00000055719 Ly6g2 protein_coding Interval_130680 chr5 129700447 129701120 + 0 NA intron (ENSMUSG00000034219.15, intron 3 of 10) protein_coding-intron (ENSMUSG00000034219.15, intron 1 of 8) 7729 ENSMUSG00000034219.15 ENSMUSG00000034219 ENSMUST00000182386 Septin14 protein_coding Interval_3278 chr1 55473730 55474097 + 0 NA intron (ENSMUSG00000038349.10, intron 1 of 5) protein_coding-intron (ENSMUSG00000038349.10, intron 1 of 5) -28889 ENSMUSG00000100309.1 ENSMUSG00000100309 ENSMUST00000186507 Gm6644 processed_pseudogene Interval_37072 chr12 57450367 57451170 + 0 NA promoter-TSS (ENSMUSG00000086372.1) antisense-promoter-TSS (ENSMUSG00000086372.1) -648 ENSMUSG00000086372.1 ENSMUSG00000086372 ENSMUST00000145464 Gm16246 antisense Interval_71459 chr17 23890786 23890972 + 0 NA intron (ENSMUSG00000117527.1, intron 1 of 1) protein_coding-intron (ENSMUSG00000096278.8, intron 1 of 3) 2709 ENSMUSG00000117527.1 ENSMUSG00000117527 ENSMUST00000234771 Gm50058 processed_pseudogene Interval_158999 chr8 88608665 88609639 + 0 NA Intergenic Intergenic 26347 ENSMUSG00000031661.12 ENSMUSG00000031661 ENSMUST00000211113 Nkd1 protein_coding Interval_125601 chr5 72491578 72492420 + 0 NA intron (ENSMUSG00000005220.10, intron 1 of 20) protein_coding-intron (ENSMUSG00000005220.10, intron 1 of 21) 5105 ENSMUSG00000093771.1 ENSMUSG00000093771 ENSMUST00000176972 AU023070 lincRNA Interval_109201 chr3 137855698 137856031 + 0 NA Intergenic Intergenic 8319 ENSMUSG00000105676.1 ENSMUSG00000105676 ENSMUST00000198830 Gm43403 antisense Interval_114329 chr4 73401276 73401540 + 0 NA exon (ENSMUSG00000066137.12, exon 6 of 6) protein_coding-exon (ENSMUSG00000066137.12, exon 6 of 6) 2041 ENSMUSG00000066137.12 ENSMUSG00000066137 ENSMUST00000084480 Gm11487 protein_coding Interval_125979 chr5 76494864 76495798 + 0 NA intron (ENSMUSG00000091204.8, intron 2 of 3) protein_coding-intron (ENSMUSG00000091204.8, intron 1 of 2) 11291 ENSMUSG00000091204.8 ENSMUSG00000091204 ENSMUST00000172369 Gm7271 protein_coding Interval_164399 chr9 36750010 36750324 + 0 NA intron (ENSMUSG00000032116.18, intron 7 of 7) protein_coding-intron (ENSMUSG00000032116.18, intron 8 of 17) 17442 ENSMUSG00000032116.18 ENSMUSG00000032116 ENSMUST00000137994 Stt3a protein_coding Interval_115549 chr4 100687943 100688635 + 0 NA Intergenic Intergenic 107011 ENSMUSG00000082601.1 ENSMUSG00000082601 ENSMUST00000118145 Gm12700 processed_pseudogene Interval_23106 chr11 19971966 19972944 + 0 NA intron (ENSMUSG00000045671.17, intron 1 of 5) protein_coding-intron (ENSMUSG00000045671.17, intron 1 of 5) 17885 ENSMUSG00000045671.17 ENSMUSG00000045671 ENSMUST00000123036 Spred2 protein_coding Interval_131990 chr5 141886536 141886769 + 0 NA intron (ENSMUSG00000039683.16, intron 1 of 40) protein_coding-intron (ENSMUSG00000039683.16, intron 1 of 40) -270650 ENSMUSG00000085540.1 ENSMUSG00000085540 ENSMUST00000150385 Gm16036 antisense Interval_56872 chr14 122645689 122646242 + 0 NA intron (ENSMUSG00000041650.15, intron 4 of 8) protein_coding-intron (ENSMUSG00000041650.15, intron 8 of 23) -35852 ENSMUSG00000115256.1 ENSMUSG00000115256 ENSMUST00000227639 Gm49259 processed_pseudogene Interval_20651 chr10 119993058 119993264 + 0 NA promoter-TSS (ENSMUSG00000034813.18) protein_coding-promoter-TSS (ENSMUSG00000034813.18) 119704 ENSMUSG00000020228.11 ENSMUSG00000020228 ENSMUST00000154501 Helb protein_coding Interval_120649 chr4 149889110 149890464 + 0 NA Intergenic Intergenic -14219 ENSMUSG00000086767.1 ENSMUSG00000086767 ENSMUST00000146532 Gm13070 antisense Interval_162377 chr8 127576678 127576877 + 0 NA intron (ENSMUSG00000025812.18, intron 22 of 24) protein_coding-intron (ENSMUSG00000025812.18, intron 21 of 23) 15342 ENSMUSG00000090074.1 ENSMUSG00000090074 ENSMUST00000161478 Gm6921 processed_pseudogene Interval_103682 chr3 51598852 51599705 + 0 NA Intergenic Intergenic 16972 ENSMUSG00000104075.1 ENSMUSG00000104075 ENSMUST00000193978 5430433H01Rik TEC Interval_141489 chr6 128591432 128591958 + 0 NA Intergenic Intergenic -3670 ENSMUSG00000107503.1 ENSMUSG00000107503 ENSMUST00000203539 Gm44009 lincRNA Interval_120751 chr4 150445767 150447850 + 0 NA intron (ENSMUSG00000039852.17, intron 4 of 22) protein_coding-intron (ENSMUSG00000039852.17, intron 4 of 22) 121736 ENSMUSG00000085213.1 ENSMUSG00000085213 ENSMUST00000128800 Gm13091 antisense Interval_73893 chr17 45335315 45335659 + 0 NA Intergenic Intergenic 98054 ENSMUSG00000023932.9 ENSMUSG00000023932 ENSMUST00000232910 Cdc5l protein_coding Interval_11319 chr1 180936548 180937186 + 0 NA promoter-TSS (ENSMUSG00000038793.8) protein_coding-promoter-TSS (ENSMUSG00000038793.8) -4 ENSMUSG00000038793.8 ENSMUSG00000038793 ENSMUST00000132087 Lefty1 protein_coding Interval_112749 chr4 44589590 44589883 + 0 NA intron (ENSMUSG00000014030.15, intron 6 of 8) protein_coding-intron (ENSMUSG00000014030.15, intron 6 of 8) 17832 ENSMUSG00000092761.1 ENSMUSG00000092761 ENSMUST00000175020 Mir5120 miRNA Interval_133065 chr5 149602701 149602952 + 0 NA intron (ENSMUSG00000029658.17, intron 21 of 22) protein_coding-intron (ENSMUSG00000029658.17, intron 21 of 22) 33512 ENSMUSG00000029657.15 ENSMUSG00000029657 ENSMUST00000201666 Hsph1 protein_coding Interval_136601 chr6 56478885 56479560 + 0 NA intron (ENSMUSG00000004347.17, intron 2 of 19) protein_coding-intron (ENSMUSG00000004347.17, intron 1 of 18) 104624 ENSMUSG00000096087.1 ENSMUSG00000096087 ENSMUST00000104123 Gm24709 snoRNA Interval_21392 chr10 128332302 128332715 + 0 NA Intergenic Intergenic -5302 ENSMUSG00000005683.8 ENSMUSG00000005683 ENSMUST00000218159 Cs protein_coding Interval_159598 chr8 95731492 95731794 + 0 NA promoter-TSS (ENSMUSG00000036550.16) protein_coding-promoter-TSS (ENSMUSG00000036550.16) 14552 ENSMUSG00000065089.1 ENSMUSG00000065089 ENSMUST00000083155 Gm26493 snoRNA Interval_28802 chr11 78414168 78414388 + 0 NA intron (ENSMUSG00000001095.5, intron 1 of 11) protein_coding-intron (ENSMUSG00000001095.5, intron 1 of 11) 7939 ENSMUSG00000001095.5 ENSMUSG00000001095 ENSMUST00000001122 Slc13a2 protein_coding Interval_98664 chr2 154005881 154006908 + 0 NA Intergenic Intergenic -1882 ENSMUSG00000042459.8 ENSMUSG00000042459 ENSMUST00000132933 Bpifa2 protein_coding Interval_50965 chr14 21285932 21286418 + 0 NA intron (ENSMUSG00000039197.10, intron 6 of 7) protein_coding-intron (ENSMUSG00000039197.10, intron 6 of 10) 22551 ENSMUSG00000088456.1 ENSMUSG00000088456 ENSMUST00000157831 Gm26372 misc_RNA Interval_94866 chr2 98307299 98307800 + 0 NA Intergenic Intergenic 16146 ENSMUSG00000080802.1 ENSMUSG00000080802 ENSMUST00000119552 Gm13804 processed_pseudogene Interval_120242 chr4 144806718 144807625 + 0 NA Intergenic Intergenic 15334 ENSMUSG00000083998.1 ENSMUSG00000083998 ENSMUST00000117259 Prdx2-ps2 processed_pseudogene Interval_166891 chr9 63726111 63727581 + 0 NA intron (ENSMUSG00000032402.12, intron 1 of 8) protein_coding-intron (ENSMUSG00000032402.12, intron 1 of 8) -14877 ENSMUSG00000032402.12 ENSMUSG00000032402 ENSMUST00000137065 Smad3 protein_coding Interval_125327 chr5 66214381 66215795 + 0 NA exon (ENSMUSG00000107125.1, exon 1 of 1) TEC-exon (ENSMUSG00000107125.1, exon 1 of 1) 341 ENSMUSG00000107125.1 ENSMUSG00000107125 ENSMUST00000201941 Gm3822 TEC Interval_58399 chr15 34155294 34155742 + 0 NA Intergenic Intergenic -16142 ENSMUSG00000089072.1 ENSMUSG00000089072 ENSMUST00000158447 Gm24500 snoRNA Interval_44151 chr13 41264966 41265157 + 0 NA intron (ENSMUSG00000091264.3, intron 1 of 1) protein_coding-intron (ENSMUSG00000091264.3, intron 1 of 1) 8916 ENSMUSG00000090853.1 ENSMUSG00000090853 ENSMUST00000163881 Gm17364 protein_coding Interval_6456 chr1 109730056 109730349 + 0 NA Intergenic Intergenic -74558 ENSMUSG00000084741.1 ENSMUSG00000084741 ENSMUST00000122792 Gm25293 misc_RNA Interval_172560 chrX 36775084 36776253 + 0 NA promoter-TSS (ENSMUSG00000064530.1) snoRNA-promoter-TSS (ENSMUSG00000064530.1) -951 ENSMUSG00000064530.1 ENSMUSG00000064530 ENSMUST00000082596 Gm23613 snoRNA Interval_168860 chr9 88142453 88142869 + 0 NA Intergenic Intergenic -3308 ENSMUSG00000102075.2 ENSMUSG00000102075 ENSMUST00000189012 Gm5368 processed_pseudogene Interval_47784 chr13 92725714 92725920 + 0 NA Intergenic Intergenic 6455 ENSMUSG00000114631.1 ENSMUSG00000114631 ENSMUST00000223855 Gm5199 processed_pseudogene Interval_144443 chr7 25195298 25195864 + 0 NA Intergenic Intergenic 22144 ENSMUSG00000098325.1 ENSMUSG00000098325 ENSMUST00000184632 Mir7048 miRNA Interval_146004 chr7 43050931 43051147 + 0 NA Intergenic Intergenic 9974 ENSMUSG00000108666.1 ENSMUSG00000108666 ENSMUST00000205615 Gm44538 processed_pseudogene Interval_126374 chr5 87549829 87550117 + 0 NA Intergenic Intergenic 10218 ENSMUSG00000029273.10 ENSMUSG00000029273 ENSMUST00000166996 Sult1d1 protein_coding Interval_74816 chr17 56701183 56701454 + 0 NA exon (ENSMUSG00000002372.9, exon 2 of 2) protein_coding-exon (ENSMUSG00000002372.9, exon 2 of 2) -16465 ENSMUSG00000002379.7 ENSMUSG00000002379 ENSMUST00000233233 Ndufa11 protein_coding Interval_67183 chr16 44188316 44189242 + 0 NA intron (ENSMUSG00000068284.14, intron 1 of 7) protein_coding-intron (ENSMUSG00000068284.14, intron 1 of 6) 15382 ENSMUSG00000068284.14 ENSMUSG00000068284 ENSMUST00000169582 Usf3 protein_coding Interval_168886 chr9 88373376 88373591 + 0 NA Intergenic Intergenic -17354 ENSMUSG00000066443.5 ENSMUSG00000066443 ENSMUST00000155008 Gm10163 processed_pseudogene Interval_80562 chr18 44197650 44198037 + 0 NA Intergenic Intergenic -1666 ENSMUSG00000073573.6 ENSMUSG00000073573 ENSMUST00000185266 Spink11 protein_coding Interval_5787 chr1 91807966 91808458 + 0 NA intron (ENSMUSG00000007805.4, intron 1 of 1) protein_coding-intron (ENSMUSG00000007805.4, intron 1 of 1) -5275 ENSMUSG00000100980.1 ENSMUSG00000100980 ENSMUST00000187564 Gm29100 antisense Interval_88653 chr2 8803177 8803686 + 0 NA Intergenic Intergenic 169494 ENSMUSG00000084374.1 ENSMUSG00000084374 ENSMUST00000117255 Gm13255 processed_pseudogene Interval_21964 chr11 5450954 5451906 + 0 NA Intergenic Intergenic 44016 ENSMUSG00000085232.3 ENSMUSG00000085232 ENSMUST00000145746 Gm11962 processed_pseudogene Interval_173761 chrX 103553479 103554526 + 0 NA intron (ENSMUSG00000097571.9, intron 3 of 3) lincRNA-intron (ENSMUSG00000097571.9, intron 3 of 3) 18994 ENSMUSG00000065509.3 ENSMUSG00000065509 ENSMUST00000083575 Mir421 miRNA Interval_76593 chr17 82162338 82162546 + 0 NA Intergenic Intergenic 30167 ENSMUSG00000117507.1 ENSMUSG00000117507 ENSMUST00000234943 Gm50045 processed_pseudogene Interval_2677 chr1 43225900 43226399 + 0 NA Intergenic Intergenic -29388 ENSMUSG00000008136.14 ENSMUSG00000008136 ENSMUST00000187357 Fhl2 protein_coding Interval_94862 chr2 98140424 98140999 + 0 NA Intergenic Intergenic -150692 ENSMUSG00000080802.1 ENSMUSG00000080802 ENSMUST00000119552 Gm13804 processed_pseudogene Interval_37313 chr12 65073380 65074356 + 0 NA promoter-TSS (ENSMUSG00000020949.9) protein_coding-promoter-TSS (ENSMUSG00000020949.9) -1739 ENSMUSG00000055884.8 ENSMUSG00000055884 ENSMUST00000221175 Fancm protein_coding Interval_113404 chr4 54601799 54602311 + 0 NA Intergenic Intergenic 37432 ENSMUSG00000081428.1 ENSMUSG00000081428 ENSMUST00000120548 Tpt1-ps2 processed_pseudogene Interval_138375 chr6 87725400 87726198 + 0 NA Intergenic Intergenic -2998 ENSMUSG00000089997.2 ENSMUSG00000089997 ENSMUST00000238521 1810020O05Rik protein_coding Interval_155423 chr8 33486319 33486649 + 0 NA Intergenic Intergenic 2288 ENSMUSG00000109750.1 ENSMUSG00000109750 ENSMUST00000210634 Hmgb1-rs17 unprocessed_pseudogene Interval_91599 chr2 44449503 44449851 + 0 NA Intergenic Intergenic 20742 ENSMUSG00000088124.1 ENSMUSG00000088124 ENSMUST00000157499 Gm22867 snRNA Interval_54195 chr14 66155317 66155622 + 0 NA TTS (ENSMUSG00000059456.13) protein_coding-TTS (ENSMUSG00000059456.13) 20430 ENSMUSG00000022041.10 ENSMUSG00000022041 ENSMUST00000022620 Chrna2 protein_coding Interval_54313 chr14 67575925 67576126 + 0 NA Intergenic Intergenic 9175 ENSMUSG00000077647.1 ENSMUSG00000077647 ENSMUST00000104459 Gm24981 snoRNA Interval_106354 chr3 95573323 95573889 + 0 NA intron (ENSMUSG00000028109.14, intron 7 of 14) protein_coding-intron (ENSMUSG00000028109.14, intron 7 of 14) 13928 ENSMUSG00000028109.14 ENSMUSG00000028109 ENSMUST00000107154 Hormad1 protein_coding Interval_113077 chr4 47536841 47537117 + 0 NA Intergenic Intergenic -56358 ENSMUSG00000098999.1 ENSMUSG00000098999 ENSMUST00000184794 Gm27601 misc_RNA Interval_7708 chr1 133187901 133190898 + 0 NA intron (ENSMUSG00000041757.17, intron 1 of 22) protein_coding-intron (ENSMUSG00000041757.17, intron 1 of 22) -57617 ENSMUSG00000102425.1 ENSMUSG00000102425 ENSMUST00000193049 Gm26616 TEC Interval_164988 chr9 43697860 43698884 + 0 NA Intergenic Intergenic 15319 ENSMUSG00000110808.1 ENSMUSG00000110808 ENSMUST00000216789 Gm5364 processed_pseudogene Interval_74823 chr17 56740584 56741338 + 0 NA Intergenic Intergenic 6733 ENSMUSG00000117146.2 ENSMUSG00000117146 ENSMUST00000233424 Fut4-ps1 transcribed_processed_pseudogene Interval_50980 chr14 21470803 21472521 + 0 NA promoter-TSS (ENSMUSG00000114875.1) processed_transcript-promoter-TSS (ENSMUSG00000114875.1) 1698 ENSMUSG00000114875.1 ENSMUSG00000114875 ENSMUST00000225719 Gm30363 processed_transcript Interval_51853 chr14 32980214 32980653 + 0 NA intron (ENSMUSG00000051506.17, intron 51 of 61) protein_coding-intron (ENSMUSG00000051506.17, intron 48 of 58) -14832 ENSMUSG00000041673.12 ENSMUSG00000041673 ENSMUST00000123910 Lrrc18 protein_coding Interval_155746 chr8 36670404 36670828 + 0 NA intron (ENSMUSG00000031523.16, intron 5 of 17) protein_coding-intron (ENSMUSG00000031523.16, intron 1 of 13) 181425 ENSMUSG00000039620.17 ENSMUSG00000039620 ENSMUST00000125492 Trmt9b protein_coding Interval_70749 chr17 14163226 14164314 + 0 NA Intergenic Intergenic -37473 ENSMUSG00000117280.1 ENSMUSG00000117280 ENSMUST00000233203 Gm49903 unprocessed_pseudogene Interval_39485 chr12 88370324 88370592 + 0 NA exon (ENSMUSG00000021044.15, exon 2 of 2) protein_coding-exon (ENSMUSG00000021044.15, exon 2 of 2) 6865 ENSMUSG00000113434.1 ENSMUSG00000113434 ENSMUST00000221603 3200001D21Rik antisense Interval_92904 chr2 68347989 68349194 + 0 NA intron (ENSMUSG00000027030.15, intron 3 of 10) protein_coding-intron (ENSMUSG00000027030.15, intron 10 of 17) 38090 ENSMUSG00000027030.15 ENSMUSG00000027030 ENSMUST00000149581 Stk39 protein_coding Interval_112925 chr4 46117239 46117467 + 0 NA promoter-TSS (ENSMUSG00000088069.1) misc_RNA-promoter-TSS (ENSMUSG00000088069.1) -827 ENSMUSG00000088069.1 ENSMUSG00000088069 ENSMUST00000157444 Gm23250 misc_RNA Interval_25851 chr11 52135510 52135912 + 0 NA Intergenic Intergenic 8965 ENSMUSG00000092870.1 ENSMUSG00000092870 ENSMUST00000175129 Mir3061 miRNA Interval_123543 chr5 33371106 33371956 + 0 NA promoter-TSS (ENSMUSG00000079562.7) protein_coding-promoter-TSS (ENSMUSG00000079562.7) -7241 ENSMUSG00000037355.14 ENSMUSG00000037355 ENSMUST00000202816 Uvssa protein_coding Interval_143804 chr7 16422144 16422489 + 0 NA intron (ENSMUSG00000059273.9, intron 7 of 13) protein_coding-intron (ENSMUSG00000059273.9, intron 6 of 13) -5695 ENSMUSG00000109647.1 ENSMUSG00000109647 ENSMUST00000210059 Gm45510 antisense Interval_85922 chr19 33264503 33265536 + 0 NA intron (ENSMUSG00000071573.14, intron 2 of 4) polymorphic_pseudogene-intron (ENSMUSG00000071573.14, intron 4 of 6) 107907 ENSMUSG00000106278.1 ENSMUSG00000106278 ENSMUST00000199287 Mir3970 miRNA Interval_24377 chr11 32742391 32743250 + 0 NA intron (ENSMUSG00000020271.17, intron 12 of 12) protein_coding-intron (ENSMUSG00000020271.17, intron 13 of 13) 32819 ENSMUSG00000098054.1 ENSMUSG00000098054 ENSMUST00000182196 Gm8192 processed_pseudogene Interval_81309 chr18 57816931 57817297 + 0 NA Intergenic Intergenic -24754 ENSMUSG00000118391.1 ENSMUSG00000118391 ENSMUST00000236807 Gm19519 antisense Interval_174195 chrX 139344944 139345791 + 0 NA intron (ENSMUSG00000086807.8, intron 3 of 19) processed_transcript-intron (ENSMUSG00000086807.8, intron 3 of 19) 11684 ENSMUSG00000051257.3 ENSMUSG00000051257 ENSMUST00000054534 Trap1a protein_coding Interval_597 chr1 8496163 8496588 + 0 NA intron (ENSMUSG00000025909.16, intron 15 of 20) protein_coding-intron (ENSMUSG00000025909.16, intron 11 of 16) -27550 ENSMUSG00000086235.1 ENSMUSG00000086235 ENSMUST00000140995 Gm16284 processed_pseudogene Interval_160409 chr8 109066495 109066790 + 0 NA Intergenic Intergenic -8603 ENSMUSG00000097393.8 ENSMUSG00000097393 ENSMUST00000181098 D030068K23Rik lincRNA Interval_140314 chr6 116385537 116386607 + 0 NA promoter-TSS (ENSMUSG00000025702.15) protein_coding-promoter-TSS (ENSMUSG00000025702.15) -3390 ENSMUSG00000107556.1 ENSMUSG00000107556 ENSMUST00000205183 Gm44237 TEC Interval_56822 chr14 122276725 122277916 + 0 NA intron (ENSMUSG00000025545.10, intron 1 of 7) protein_coding-intron (ENSMUSG00000025545.10, intron 1 of 7) 19279 ENSMUSG00000025545.10 ENSMUSG00000025545 ENSMUST00000226136 Clybl protein_coding Interval_131843 chr5 140321098 140322122 + 0 NA promoter-TSS (ENSMUSG00000029554.15) protein_coding-promoter-TSS (ENSMUSG00000029554.15) -46 ENSMUSG00000036639.12 ENSMUSG00000036639 ENSMUST00000145898 Nudt1 protein_coding Interval_110185 chr3 154058292 154058626 + 0 NA intron (ENSMUSG00000028360.10, intron 1 of 21) protein_coding-intron (ENSMUSG00000028360.10, intron 1 of 21) 11536 ENSMUSG00000028360.10 ENSMUSG00000028360 ENSMUST00000144677 Slc44a5 protein_coding Interval_45771 chr13 57973443 57973674 + 0 NA Intergenic Intergenic 49642 ENSMUSG00000077962.1 ENSMUSG00000077962 ENSMUST00000104769 Mir874 miRNA Interval_174364 chrX 150398409 150399676 + 0 NA intron (ENSMUSG00000041353.12, intron 2 of 2) protein_coding-intron (ENSMUSG00000041353.12, intron 2 of 2) -31126 ENSMUSG00000081928.1 ENSMUSG00000081928 ENSMUST00000117777 Gm15105 processed_pseudogene Interval_76097 chr17 74944836 74945935 + 0 NA intron (ENSMUSG00000117560.1, intron 2 of 2) lincRNA-intron (ENSMUSG00000117560.1, intron 2 of 2) 4916 ENSMUSG00000117560.1 ENSMUSG00000117560 ENSMUST00000234897 Gm31759 lincRNA Interval_57995 chr15 25910175 25910931 + 0 NA exon (ENSMUSG00000022270.16, exon 1 of 3) protein_coding-exon (ENSMUSG00000022270.16, exon 1 of 3) 129 ENSMUSG00000022270.16 ENSMUSG00000022270 ENSMUST00000228306 Retreg1 protein_coding Interval_30596 chr11 95336635 95337996 + 0 NA promoter-TSS (ENSMUSG00000085509.1) antisense-promoter-TSS (ENSMUSG00000085509.1) 93 ENSMUSG00000085509.1 ENSMUSG00000085509 ENSMUST00000143302 Gm11521 antisense Interval_5101 chr1 84927924 84928314 + 0 NA intron (ENSMUSG00000026220.6, intron 2 of 4) protein_coding-intron (ENSMUSG00000026220.6, intron 2 of 4) 6738 ENSMUSG00000026220.6 ENSMUSG00000026220 ENSMUST00000186980 Slc16a14 protein_coding Interval_66351 chr16 33325835 33327559 + 0 NA Intergenic Intergenic 53978 ENSMUSG00000097318.2 ENSMUSG00000097318 ENSMUST00000180923 1700007L15Rik bidirectional_promoter_lncRNA Interval_163927 chr9 28815688 28815919 + 0 NA TTS (ENSMUSG00000062257.13) protein_coding-TTS (ENSMUSG00000062257.13) 138544 ENSMUSG00000110741.1 ENSMUSG00000110741 ENSMUST00000215483 Gm48091 antisense Interval_24594 chr11 35003919 35004797 + 0 NA Intergenic Intergenic 105341 ENSMUSG00000064577.1 ENSMUSG00000064577 ENSMUST00000082643 Gm25799 snRNA Interval_7178 chr1 127496837 127497206 + 0 NA intron (ENSMUSG00000026347.13, intron 6 of 7) protein_coding-intron (ENSMUSG00000026347.13, intron 6 of 8) 90245 ENSMUSG00000103390.1 ENSMUSG00000103390 ENSMUST00000195573 Gm38301 TEC Interval_4573 chr1 75185554 75186518 + 0 NA promoter-TSS (ENSMUSG00000099519.1) processed_transcript-promoter-TSS (ENSMUSG00000099519.1) -890 ENSMUSG00000099519.1 ENSMUSG00000099519 ENSMUST00000185727 Gm29253 processed_transcript Interval_98707 chr2 154443233 154443552 + 0 NA intron (ENSMUSG00000038533.15, intron 1 of 2) protein_coding-intron (ENSMUSG00000038533.15, intron 1 of 10) 6550 ENSMUSG00000038533.15 ENSMUSG00000038533 ENSMUST00000139506 Cbfa2t2 protein_coding Interval_25686 chr11 50769059 50770043 + 0 NA intron (ENSMUSG00000036545.9, intron 5 of 20) protein_coding-intron (ENSMUSG00000036545.9, intron 5 of 21) -40100 ENSMUSG00000088205.1 ENSMUSG00000088205 ENSMUST00000157580 Gm23392 rRNA Interval_89351 chr2 19649595 19649865 + 0 NA Intergenic Intergenic 2618 ENSMUSG00000080227.2 ENSMUSG00000080227 ENSMUST00000116474 Gm13343 processed_pseudogene Interval_44406 chr13 44668300 44670097 + 0 NA Intergenic Intergenic 47016 ENSMUSG00000113730.1 ENSMUSG00000113730 ENSMUST00000221956 Gm47805 lincRNA Interval_97470 chr2 136890651 136892399 + 0 NA promoter-TSS (ENSMUSG00000027274.16) protein_coding-promoter-TSS (ENSMUSG00000027274.16) -136 ENSMUSG00000115423.2 ENSMUSG00000115423 ENSMUST00000227806 AL731706.1 protein_coding Interval_86478 chr19 40946227 40948510 + 0 NA intron (ENSMUSG00000061132.13, intron 8 of 16) protein_coding-intron (ENSMUSG00000061132.13, intron 8 of 16) 47167 ENSMUSG00000061132.13 ENSMUSG00000061132 ENSMUST00000134568 Blnk protein_coding Interval_77226 chr17 87461319 87461696 + 0 NA Intergenic Intergenic -1143 ENSMUSG00000117545.1 ENSMUSG00000117545 ENSMUST00000234358 Gm30794 lincRNA Interval_53011 chr14 53441139 53441347 + 0 NA Intergenic Intergenic -2006 ENSMUSG00000096908.3 ENSMUSG00000096908 ENSMUST00000177622 Trav7-3 TR_V_gene Interval_8318 chr1 137289248 137290956 + 0 NA Intergenic Intergenic 35740 ENSMUSG00000102738.1 ENSMUSG00000102738 ENSMUST00000191810 1700006P03Rik TEC Interval_37674 chr12 71015018 71017177 + 0 NA promoter-TSS (ENSMUSG00000048118.17) protein_coding-promoter-TSS (ENSMUSG00000048118.17) -502 ENSMUSG00000085622.9 ENSMUSG00000085622 ENSMUST00000222159 3110056K07Rik processed_transcript Interval_79561 chr18 33778897 33779220 + 0 NA Intergenic Intergenic -15881 ENSMUSG00000087590.2 ENSMUSG00000087590 ENSMUST00000179138 Epb41l4aos lincRNA Interval_4819 chr1 79737754 79738229 + 0 NA intron (ENSMUSG00000073643.11, intron 2 of 10) protein_coding-intron (ENSMUSG00000073643.11, intron 2 of 4) 23747 ENSMUSG00000073643.11 ENSMUSG00000073643 ENSMUST00000125641 Wdfy1 protein_coding Interval_75513 chr17 67687622 67688473 + 0 NA Intergenic Intergenic -9218 ENSMUSG00000032796.8 ENSMUSG00000032796 ENSMUST00000233224 Lama1 protein_coding Interval_81082 chr18 53706375 53707045 + 0 NA intron (ENSMUSG00000048799.8, intron 17 of 19) protein_coding-intron (ENSMUSG00000048799.8, intron 17 of 20) 37853 ENSMUSG00000048799.8 ENSMUSG00000048799 ENSMUST00000235928 Cep120 protein_coding Interval_153528 chr8 3179950 3180654 + 0 NA exon (ENSMUSG00000005534.10, exon 1 of 1) protein_coding-exon (ENSMUSG00000005534.10, exon 1 of 1) -20747 ENSMUSG00000005534.10 ENSMUSG00000005534 ENSMUST00000139504 Insr protein_coding Interval_49052 chr13 107461129 107461521 + 0 NA Intergenic Intergenic -8497 ENSMUSG00000114780.1 ENSMUSG00000114780 ENSMUST00000223617 AI197445 lincRNA Interval_146265 chr7 45050994 45051543 + 0 NA exon (ENSMUSG00000046574.8, exon 2 of 14) protein_coding-exon (ENSMUSG00000046574.8, exon 2 of 14) 10438 ENSMUSG00000007837.11 ENSMUSG00000007837 ENSMUST00000209219 Prrg2 protein_coding Interval_52348 chr14 45328993 45330356 + 0 NA promoter-TSS (ENSMUSG00000021832.8) protein_coding-promoter-TSS (ENSMUSG00000021832.8) -4733 ENSMUSG00000021832.8 ENSMUSG00000021832 ENSMUST00000226739 Psmc6 protein_coding Interval_21345 chr10 128092409 128093451 + 0 NA intron (ENSMUSG00000040054.17, intron 1 of 13) protein_coding-intron (ENSMUSG00000040054.17, intron 1 of 29) 1348 ENSMUSG00000040054.17 ENSMUSG00000040054 ENSMUST00000219980 Baz2a protein_coding Interval_154134 chr8 12959448 12959810 + 0 NA intron (ENSMUSG00000031442.21, intron 1 of 29) protein_coding-intron (ENSMUSG00000031442.21, intron 2 of 29) 11688 ENSMUSG00000105030.1 ENSMUSG00000105030 ENSMUST00000200573 Gm38671 miRNA Interval_153271 chr7 143106409 143107960 + 0 NA promoter-TSS (ENSMUSG00000009545.14) protein_coding-promoter-TSS (ENSMUSG00000009545.14) -2010 ENSMUSG00000009545.14 ENSMUSG00000009545 ENSMUST00000187213 Kcnq1 protein_coding Interval_138379 chr6 87748304 87748679 + 0 NA intron (ENSMUSG00000068263.11, intron 1 of 2) protein_coding-intron (ENSMUSG00000068263.11, intron 2 of 7) -17343 ENSMUSG00000108079.1 ENSMUSG00000108079 ENSMUST00000205253 Gm44210 antisense Interval_14003 chr10 25404429 25404769 + 0 NA intron (ENSMUSG00000019978.16, intron 1 of 1) protein_coding-intron (ENSMUSG00000019978.16, intron 1 of 19) 11586 ENSMUSG00000112445.1 ENSMUSG00000112445 ENSMUST00000219193 Gm47830 processed_pseudogene Interval_93165 chr2 70787521 70788130 + 0 NA intron (ENSMUSG00000041997.16, intron 1 of 21) protein_coding-intron (ENSMUSG00000041997.16, intron 1 of 19) -68864 ENSMUSG00000082303.1 ENSMUSG00000082303 ENSMUST00000120668 Gm13633 processed_pseudogene Interval_21820 chr11 4565249 4565890 + 0 NA TTS (ENSMUSG00000081974.3) transcribed_processed_pseudogene-TTS (ENSMUSG00000081974.3) 3789 ENSMUSG00000081974.3 ENSMUSG00000081974 ENSMUST00000122068 Gm11960 transcribed_processed_pseudogene Interval_132276 chr5 143881119 143882161 + 0 NA intron (ENSMUSG00000029613.15, intron 6 of 14) protein_coding-intron (ENSMUSG00000029613.15, intron 6 of 14) 16045 ENSMUSG00000029607.14 ENSMUSG00000029607 ENSMUST00000110718 Ankrd61 protein_coding Interval_55022 chr14 77035934 77037136 + 0 NA promoter-TSS (ENSMUSG00000034795.14) protein_coding-promoter-TSS (ENSMUSG00000034795.14) -329 ENSMUSG00000034795.14 ENSMUSG00000034795 ENSMUST00000137110 Ccdc122 protein_coding Interval_59394 chr15 52082407 52082622 + 0 NA Intergenic Intergenic -6794 ENSMUSG00000115457.1 ENSMUSG00000115457 ENSMUST00000227885 Gm2387 processed_pseudogene Interval_7381 chr1 130731532 130732314 + 0 NA promoter-TSS (ENSMUSG00000042510.7) protein_coding-promoter-TSS (ENSMUSG00000042510.7) -3102 ENSMUSG00000104515.1 ENSMUSG00000104515 ENSMUST00000195439 Gm37163 TEC Interval_497 chr1 6426360 6426855 + 0 NA Intergenic Intergenic 14689 ENSMUSG00000103845.1 ENSMUSG00000103845 ENSMUST00000194240 Gm19026 processed_pseudogene Interval_63419 chr15 100949318 100949523 + 0 NA intron (ENSMUSG00000023033.14, intron 2 of 26) protein_coding-intron (ENSMUSG00000023033.14, intron 2 of 26) -20702 ENSMUSG00000023033.14 ENSMUSG00000023033 ENSMUST00000201246 Scn8a protein_coding Interval_63394 chr15 100789790 100791233 + 0 NA intron (ENSMUSG00000023032.12, intron 8 of 23) protein_coding-intron (ENSMUSG00000023032.12, intron 9 of 24) -12237 ENSMUSG00000023032.12 ENSMUSG00000023032 ENSMUST00000162744 Slc4a8 protein_coding Interval_77366 chr17 88267704 88269458 + 0 NA intron (ENSMUSG00000117351.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000117351.1, intron 1 of 1) 36797 ENSMUSG00000117497.1 ENSMUSG00000117497 ENSMUST00000234925 1700116H05Rik lincRNA Interval_38538 chr12 79973615 79974076 + 0 NA Intergenic Intergenic 6006 ENSMUSG00000112292.1 ENSMUSG00000112292 ENSMUST00000219732 Gm8275 processed_pseudogene Interval_136482 chr6 54851565 54853558 + 0 NA intron (ENSMUSG00000058446.14, intron 2 of 3) protein_coding-intron (ENSMUSG00000058446.14, intron 1 of 4) 35291 ENSMUSG00000058446.14 ENSMUSG00000058446 ENSMUST00000127331 Znrf2 protein_coding Interval_133680 chr6 8497648 8497944 + 0 NA exon (ENSMUSG00000087305.8, exon 1 of 5) processed_transcript-exon (ENSMUSG00000087305.8, exon 1 of 5) 3560 ENSMUSG00000077250.1 ENSMUSG00000077250 ENSMUST00000104062 Gm26075 snoRNA Interval_1938 chr1 34738282 34740732 + 0 NA intron (ENSMUSG00000037509.21, intron 1 of 10) protein_coding-intron (ENSMUSG00000037509.21, intron 3 of 13) -13268 ENSMUSG00000102537.1 ENSMUSG00000102537 ENSMUST00000192878 Gm37224 processed_pseudogene Interval_109420 chr3 142168390 142169637 + 0 NA intron (ENSMUSG00000052430.15, intron 1 of 11) protein_coding-intron (ENSMUSG00000052430.15, intron 1 of 11) 15738 ENSMUSG00000105015.1 ENSMUSG00000105015 ENSMUST00000196903 Gm6059 processed_pseudogene Interval_115251 chr4 94876748 94877877 + 0 NA Intergenic Intergenic 51531 ENSMUSG00000028575.11 ENSMUSG00000028575 ENSMUST00000030309 Eqtn protein_coding Interval_79060 chr18 24218814 24219693 + 0 NA intron (ENSMUSG00000000420.15, intron 1 of 4) protein_coding-intron (ENSMUSG00000000420.15, intron 1 of 12) -13344 ENSMUSG00000000420.15 ENSMUSG00000000420 ENSMUST00000170191 Galnt1 protein_coding Interval_67433 chr16 48610999 48612124 + 0 NA intron (ENSMUSG00000022652.7, intron 1 of 5) protein_coding-intron (ENSMUSG00000022652.7, intron 20 of 26) 131929 ENSMUSG00000022652.7 ENSMUSG00000022652 ENSMUST00000232195 Morc1 protein_coding Interval_76612 chr17 82439843 82441686 + 0 NA Intergenic Intergenic -29945 ENSMUSG00000117438.1 ENSMUSG00000117438 ENSMUST00000234808 Rpsa-ps7 processed_pseudogene Interval_64271 chr16 10081015 10082384 + 0 NA Intergenic Intergenic -35734 ENSMUSG00000098170.1 ENSMUSG00000098170 ENSMUST00000182416 Gm3890 processed_pseudogene Interval_18109 chr10 82685092 82685292 + 0 NA intron (ENSMUSG00000020251.13, intron 1 of 1) protein_coding-intron (ENSMUSG00000020251.13, intron 1 of 9) -14019 ENSMUSG00000020246.13 ENSMUSG00000020246 ENSMUST00000160681 Hcfc2 protein_coding Interval_157495 chr8 70885421 70886099 + 0 NA intron (ENSMUSG00000000792.2, intron 13 of 14) protein_coding-intron (ENSMUSG00000000792.2, intron 13 of 14) 6997 ENSMUSG00000000792.2 ENSMUSG00000000792 ENSMUST00000000809 Slc5a5 protein_coding Interval_31089 chr11 98066196 98067798 + 0 NA Intergenic Intergenic 3109 ENSMUSG00000084079.1 ENSMUSG00000084079 ENSMUST00000119220 Gm11631 processed_pseudogene Interval_163071 chr9 15015362 15015807 + 0 NA intron (ENSMUSG00000031934.14, intron 2 of 2) protein_coding-intron (ENSMUSG00000031934.14, intron 2 of 3) 28213 ENSMUSG00000031934.14 ENSMUSG00000031934 ENSMUST00000169288 Panx1 protein_coding Interval_84338 chr19 10203263 10204803 + 0 NA promoter-TSS (ENSMUSG00000024742.15) protein_coding-promoter-TSS (ENSMUSG00000024742.15) 136 ENSMUSG00000024742.15 ENSMUSG00000024742 ENSMUST00000142241 Fen1 protein_coding Interval_174825 chrX 168190243 168190444 + 0 NA intron (ENSMUSG00000049176.16, intron 3 of 19) protein_coding-intron (ENSMUSG00000049176.16, intron 3 of 19) -66053 ENSMUSG00000049176.16 ENSMUSG00000049176 ENSMUST00000239138 Frmpd4 protein_coding Interval_64023 chr16 5467602 5468084 + 0 NA Intergenic Intergenic -143686 ENSMUSG00000084573.1 ENSMUSG00000084573 ENSMUST00000122624 n-R5s30 rRNA Interval_66593 chr16 35483931 35484813 + 0 NA intron (ENSMUSG00000022844.8, intron 2 of 8) protein_coding-intron (ENSMUSG00000022844.8, intron 1 of 16) 25047 ENSMUSG00000099429.1 ENSMUSG00000099429 ENSMUST00000187829 1600019K03Rik lincRNA Interval_160433 chr8 109467690 109468388 + 0 NA Intergenic Intergenic -27005 ENSMUSG00000031727.8 ENSMUSG00000031727 ENSMUST00000212003 Pmfbp1 protein_coding Interval_146621 chr7 48697949 48698518 + 0 NA Intergenic Intergenic -12619 ENSMUSG00000099889.1 ENSMUSG00000099889 ENSMUST00000187816 Mrgprb11-ps unprocessed_pseudogene Interval_108070 chr3 121337374 121338036 + 0 NA promoter-TSS (ENSMUSG00000084674.1) misc_RNA-promoter-TSS (ENSMUSG00000084674.1) 13 ENSMUSG00000084674.1 ENSMUSG00000084674 ENSMUST00000122725 Gm26027 misc_RNA Interval_46189 chr13 62376174 62376515 + 0 NA intron (ENSMUSG00000094942.7, intron 1 of 2) protein_coding-intron (ENSMUSG00000094942.7, intron 1 of 3) 6807 ENSMUSG00000094942.7 ENSMUSG00000094942 ENSMUST00000202194 Gm3604 protein_coding Interval_130746 chr5 130111982 130112705 + 0 NA intron (ENSMUSG00000034118.15, intron 2 of 5) protein_coding-intron (ENSMUSG00000034118.15, intron 2 of 5) 18754 ENSMUSG00000034118.15 ENSMUSG00000034118 ENSMUST00000128335 Tpst1 protein_coding Interval_139305 chr6 98236504 98236736 + 0 NA exon (ENSMUSG00000090667.2, exon 4 of 4) protein_coding-exon (ENSMUSG00000090667.2, exon 4 of 4) 106039 ENSMUSG00000090667.2 ENSMUSG00000090667 ENSMUST00000204914 Gm765 protein_coding Interval_141271 chr6 126756277 126756575 + 0 NA Intergenic Intergenic -15752 ENSMUSG00000038077.7 ENSMUSG00000038077 ENSMUST00000112242 Kcna6 protein_coding Interval_42817 chr13 19995808 19996129 + 0 NA promoter-TSS (ENSMUSG00000050243.6) processed_pseudogene-promoter-TSS (ENSMUSG00000050243.6) -164 ENSMUSG00000050243.6 ENSMUSG00000050243 ENSMUST00000091762 Gm5446 processed_pseudogene Interval_98765 chr2 154805854 154806415 + 0 NA intron (ENSMUSG00000027593.15, intron 2 of 3) protein_coding-intron (ENSMUSG00000027593.15, intron 1 of 9) 14780 ENSMUSG00000027593.15 ENSMUSG00000027593 ENSMUST00000151578 Raly protein_coding Interval_119509 chr4 138015743 138015969 + 0 NA intron (ENSMUSG00000028760.16, intron 2 of 8) protein_coding-intron (ENSMUSG00000028760.16, intron 2 of 9) 22343 ENSMUSG00000028760.16 ENSMUSG00000028760 ENSMUST00000148074 Eif4g3 protein_coding Interval_98014 chr2 146721338 146721545 + 0 NA Intergenic Intergenic 34264 ENSMUSG00000080870.1 ENSMUSG00000080870 ENSMUST00000119851 Gm14111 processed_pseudogene Interval_15710 chr10 53982082 53982343 + 0 NA intron (ENSMUSG00000003746.16, intron 5 of 12) protein_coding-intron (ENSMUSG00000003746.16, intron 5 of 12) -81599 ENSMUSG00000112824.1 ENSMUSG00000112824 ENSMUST00000219148 Gm47917 antisense Interval_28522 chr11 76482709 76484052 + 0 NA intron (ENSMUSG00000017631.19, intron 3 of 22) protein_coding-intron (ENSMUSG00000017631.19, intron 3 of 22) -30689 ENSMUSG00000080763.2 ENSMUSG00000080763 ENSMUST00000119724 Gm12341 processed_pseudogene Interval_90490 chr2 30771404 30773266 + 0 NA Intergenic Intergenic 31309 ENSMUSG00000044320.14 ENSMUSG00000044320 ENSMUST00000140168 1700001O22Rik protein_coding Interval_128751 chr5 115076326 115077127 + 0 NA exon (ENSMUSG00000029550.11, exon 1 of 1) protein_coding-exon (ENSMUSG00000029550.11, exon 1 of 1) 2359 ENSMUSG00000029550.11 ENSMUSG00000029550 ENSMUST00000128678 Sppl3 protein_coding Interval_116339 chr4 109977360 109978611 + 0 NA promoter-TSS (ENSMUSG00000047143.3) protein_coding-promoter-TSS (ENSMUSG00000047143.3) -68 ENSMUSG00000047143.3 ENSMUSG00000047143 ENSMUST00000061187 Dmrta2 protein_coding Interval_25810 chr11 51865557 51866364 + 0 NA Intergenic Intergenic -8835 ENSMUSG00000020387.15 ENSMUSG00000020387 ENSMUST00000151277 Jade2 protein_coding Interval_53961 chr14 63837907 63838212 + 0 NA Intergenic Intergenic -61710 ENSMUSG00000021958.5 ENSMUSG00000021958 ENSMUST00000225564 Pinx1 protein_coding Interval_39401 chr12 87186153 87186629 + 0 NA intron (ENSMUSG00000034111.6, intron 1 of 5) protein_coding-intron (ENSMUSG00000034111.6, intron 1 of 5) -13332 ENSMUSG00000090812.8 ENSMUSG00000090812 ENSMUST00000169669 Samd15 protein_coding Interval_18925 chr10 93184690 93184888 + 0 NA intron (ENSMUSG00000020015.10, intron 1 of 2) protein_coding-intron (ENSMUSG00000020015.10, intron 1 of 16) 22004 ENSMUSG00000089214.1 ENSMUSG00000089214 ENSMUST00000158589 Mir1931 miRNA Interval_65648 chr16 24740950 24741654 + 0 NA intron (ENSMUSG00000033306.15, intron 2 of 7) protein_coding-intron (ENSMUSG00000033306.15, intron 7 of 12) -86553 ENSMUSG00000065494.1 ENSMUSG00000065494 ENSMUST00000083560 Mir28a miRNA Interval_53213 chr14 55169379 55169868 + 0 NA promoter-TSS (ENSMUSG00000115077.1) unprocessed_pseudogene-promoter-TSS (ENSMUSG00000115077.1) -86 ENSMUSG00000115077.1 ENSMUSG00000115077 ENSMUST00000228176 Gm46455 unprocessed_pseudogene Interval_8130 chr1 135890770 135892270 + 0 NA intron (ENSMUSG00000026413.12, intron 2 of 13) protein_coding-intron (ENSMUSG00000026413.12, intron 2 of 13) 7569 ENSMUSG00000102414.1 ENSMUSG00000102414 ENSMUST00000191612 Gm36938 TEC Interval_126354 chr5 86953641 86953896 + 0 NA Intergenic Intergenic 7946 ENSMUSG00000104798.1 ENSMUSG00000104798 ENSMUST00000198547 Gm20121 processed_pseudogene Interval_1748 chr1 33504182 33505071 + 0 NA intron (ENSMUSG00000026134.11, intron 4 of 5) protein_coding-intron (ENSMUSG00000026134.11, intron 10 of 13) 22525 ENSMUSG00000101682.1 ENSMUSG00000101682 ENSMUST00000185489 Gm29228 processed_pseudogene Interval_55015 chr14 76964685 76965076 + 0 NA Intergenic Intergenic -11369 ENSMUSG00000115303.1 ENSMUSG00000115303 ENSMUST00000227717 Gm4291 processed_pseudogene Interval_89898 chr2 26315252 26316445 + 0 NA intron (ENSMUSG00000026930.15, intron 1 of 12) protein_coding-intron (ENSMUSG00000026930.15, intron 1 of 13) -10186 ENSMUSG00000026930.15 ENSMUSG00000026930 ENSMUST00000142057 Gpsm1 protein_coding Interval_13525 chr10 19153635 19155229 + 0 NA intron (ENSMUSG00000111052.1, intron 1 of 3) lincRNA-intron (ENSMUSG00000111052.1, intron 1 of 3) -12806 ENSMUSG00000111052.1 ENSMUSG00000111052 ENSMUST00000216683 Gm20139 lincRNA Interval_93857 chr2 77542989 77544059 + 0 NA intron (ENSMUSG00000027016.17, intron 3 of 3) protein_coding-intron (ENSMUSG00000027016.17, intron 1 of 7) 80855 ENSMUSG00000085845.7 ENSMUSG00000085845 ENSMUST00000126572 Gm13944 antisense Interval_5421 chr1 88664832 88665073 + 0 NA Intergenic Intergenic 8644 ENSMUSG00000100367.1 ENSMUSG00000100367 ENSMUST00000186042 Gm29336 lincRNA Interval_1695 chr1 31316850 31317053 + 0 NA Intergenic Intergenic 30006 ENSMUSG00000094215.2 ENSMUSG00000094215 ENSMUST00000178167 Gm6489 processed_pseudogene Interval_119410 chr4 137524371 137524678 + 0 NA intron (ENSMUSG00000028763.18, intron 3 of 5) protein_coding-intron (ENSMUSG00000028763.18, intron 33 of 96) 2065 ENSMUSG00000028763.18 ENSMUSG00000028763 ENSMUST00000155648 Hspg2 protein_coding Interval_132389 chr5 144650861 144651177 + 0 NA Intergenic Intergenic 72778 ENSMUSG00000082524.3 ENSMUSG00000082524 ENSMUST00000121256 Gm6272 processed_pseudogene Interval_171638 chr9 119791364 119793101 + 0 NA intron (ENSMUSG00000034115.10, intron 14 of 26) protein_coding-intron (ENSMUSG00000034115.10, intron 14 of 26) 31628 ENSMUSG00000034115.10 ENSMUSG00000034115 ENSMUST00000070617 Scn11a protein_coding Interval_36044 chr12 33638034 33638362 + 0 NA Intergenic Intergenic -141301 ENSMUSG00000112076.1 ENSMUSG00000112076 ENSMUST00000219348 Gm9368 processed_pseudogene Interval_39566 chr12 90744605 90745053 + 0 NA promoter-TSS (ENSMUSG00000097157.2) bidirectional_promoter_lncRNA-promoter-TSS (ENSMUSG00000097157.2) -6391 ENSMUSG00000007682.6 ENSMUSG00000007682 ENSMUST00000082432 Dio2 protein_coding Interval_62271 chr15 89355096 89357025 + 0 NA promoter-TSS (ENSMUSG00000022614.8) protein_coding-promoter-TSS (ENSMUSG00000022614.8) -913 ENSMUSG00000022614.8 ENSMUSG00000022614 ENSMUST00000229111 Lmf2 protein_coding Interval_77292 chr17 87842194 87843559 + 0 NA Intergenic Intergenic 17803 ENSMUSG00000117466.1 ENSMUSG00000117466 ENSMUST00000234350 Gm50039 lincRNA Interval_115172 chr4 93297938 93298207 + 0 NA Intergenic Intergenic -31784 ENSMUSG00000082325.1 ENSMUSG00000082325 ENSMUST00000121098 Gm12642 processed_pseudogene Interval_97466 chr2 136857127 136857320 + 0 NA Intergenic Intergenic 28456 ENSMUSG00000116563.1 ENSMUSG00000116563 ENSMUST00000231720 AL731706.2 protein_coding Interval_102337 chr3 22024063 22026350 + 0 NA Intergenic Intergenic 4009 ENSMUSG00000106527.1 ENSMUSG00000106527 ENSMUST00000200422 Gm43671 processed_pseudogene Interval_64170 chr16 8819913 8820305 + 0 NA Intergenic Intergenic -11212 ENSMUSG00000022507.6 ENSMUSG00000022507 ENSMUST00000229318 1810013L24Rik protein_coding Interval_33589 chr11 117386770 117387534 + 0 NA Intergenic Intergenic -27237 ENSMUSG00000086588.1 ENSMUSG00000086588 ENSMUST00000124901 Gm11729 lincRNA Interval_1375 chr1 21078644 21079844 + 0 NA promoter-TSS (ENSMUSG00000041779.5) protein_coding-promoter-TSS (ENSMUSG00000041779.5) -870 ENSMUSG00000099971.1 ENSMUSG00000099971 ENSMUST00000186612 Gm28287 antisense Interval_9035 chr1 153211457 153211707 + 0 NA Intergenic Intergenic 27744 ENSMUSG00000026478.14 ENSMUSG00000026478 ENSMUST00000159251 Lamc1 protein_coding Interval_78374 chr18 12267878 12268981 + 0 NA intron (ENSMUSG00000057766.14, intron 4 of 5) protein_coding-intron (ENSMUSG00000057766.14, intron 7 of 9) 13916 ENSMUSG00000057766.14 ENSMUSG00000057766 ENSMUST00000142066 Ankrd29 protein_coding Interval_67091 chr16 42838258 42838476 + 0 NA intron (ENSMUSG00000075070.6, intron 1 of 1) lincRNA-intron (ENSMUSG00000075070.6, intron 1 of 1) 37373 ENSMUSG00000075070.6 ENSMUSG00000075070 ENSMUST00000130331 4932412D23Rik lincRNA Interval_168201 chr9 77938885 77939522 + 0 NA intron (ENSMUSG00000032349.13, intron 1 of 5) protein_coding-intron (ENSMUSG00000032349.13, intron 1 of 7) 21769 ENSMUSG00000032349.13 ENSMUSG00000032349 ENSMUST00000134072 Elovl5 protein_coding Interval_102999 chr3 34102702 34103562 + 0 NA Intergenic Intergenic -22952 ENSMUSG00000027679.13 ENSMUSG00000027679 ENSMUST00000117223 Dnajc19 protein_coding Interval_42278 chr13 11563375 11564133 + 0 NA intron (ENSMUSG00000021313.16, intron 100 of 104) protein_coding-intron (ENSMUSG00000021313.16, intron 100 of 104) 21200 ENSMUSG00000021313.16 ENSMUSG00000021313 ENSMUST00000221341 Ryr2 protein_coding Interval_26141 chr11 54720314 54720718 + 0 NA intron (ENSMUSG00000052298.12, intron 4 of 5) protein_coding-intron (ENSMUSG00000052298.12, intron 4 of 5) -8161 ENSMUSG00000086039.1 ENSMUSG00000086039 ENSMUST00000147847 Gm12227 antisense Interval_86421 chr19 40356733 40357092 + 0 NA intron (ENSMUSG00000025006.18, intron 5 of 19) protein_coding-intron (ENSMUSG00000025006.18, intron 8 of 21) 19962 ENSMUSG00000025006.18 ENSMUSG00000025006 ENSMUST00000225293 Sorbs1 protein_coding Interval_12963 chr10 8772469 8772723 + 0 NA intron (ENSMUSG00000015305.6, intron 8 of 19) protein_coding-intron (ENSMUSG00000015305.6, intron 8 of 19) 51551 ENSMUSG00000065692.1 ENSMUSG00000065692 ENSMUST00000083758 Gm25410 snoRNA Interval_121395 chr4 155505421 155506387 + 0 NA intron (ENSMUSG00000029064.15, intron 1 of 5) protein_coding-intron (ENSMUSG00000029064.15, intron 1 of 11) -3198 ENSMUSG00000082429.1 ENSMUSG00000082429 ENSMUST00000117233 Gm13171 processed_pseudogene Interval_130088 chr5 124186584 124188107 + 0 NA promoter-TSS (ENSMUSG00000029406.15) protein_coding-promoter-TSS (ENSMUSG00000029406.15) -8297 ENSMUSG00000089842.2 ENSMUSG00000089842 ENSMUST00000198466 Pitpnm2os2 antisense Interval_86590 chr19 41920797 41920999 + 0 NA Intergenic Intergenic 8860 ENSMUSG00000011752.7 ENSMUSG00000011752 ENSMUST00000235468 Pgam1 protein_coding Interval_54610 chr14 71404041 71405135 + 0 NA Intergenic Intergenic -16424 ENSMUSG00000115286.1 ENSMUSG00000115286 ENSMUST00000226329 4930429C20Rik lincRNA Interval_44316 chr13 43579379 43580214 + 0 NA Intergenic Intergenic -19605 ENSMUSG00000021371.5 ENSMUSG00000021371 ENSMUST00000223353 Mcur1 protein_coding Interval_84990 chr19 21040836 21041388 + 0 NA Intergenic Intergenic -63598 ENSMUSG00000118047.1 ENSMUSG00000118047 ENSMUST00000237768 4930554I06Rik lincRNA Interval_67526 chr16 50324124 50324572 + 0 NA intron (ENSMUSG00000022641.15, intron 3 of 16) protein_coding-intron (ENSMUSG00000022641.15, intron 3 of 15) 107961 ENSMUSG00000022641.15 ENSMUSG00000022641 ENSMUST00000130210 Bbx protein_coding Interval_17397 chr10 76354593 76355315 + 0 NA exon (ENSMUSG00000001151.10, exon 2 of 2) protein_coding-exon (ENSMUSG00000001151.10, exon 2 of 2) -9722 ENSMUSG00000020231.15 ENSMUSG00000020231 ENSMUST00000162766 Dip2a protein_coding Interval_126882 chr5 96677459 96677879 + 0 NA intron (ENSMUSG00000034687.8, intron 32 of 73) protein_coding-intron (ENSMUSG00000034687.8, intron 32 of 73) 61695 ENSMUSG00000106526.1 ENSMUSG00000106526 ENSMUST00000200077 Gm42604 antisense Interval_144696 chr7 27577048 27577517 + 0 NA intron (ENSMUSG00000049643.15, intron 3 of 4) protein_coding-intron (ENSMUSG00000049643.15, intron 8 of 9) -14464 ENSMUSG00000004056.15 ENSMUSG00000004056 ENSMUST00000136981 Akt2 protein_coding Interval_128322 chr5 112533522 112534322 + 0 NA intron (ENSMUSG00000058153.15, intron 1 of 14) protein_coding-intron (ENSMUSG00000058153.15, intron 1 of 16) 42946 ENSMUSG00000058153.15 ENSMUSG00000058153 ENSMUST00000212758 Sez6l protein_coding Interval_63923 chr16 4583994 4584198 + 0 NA Intergenic Intergenic -17067 ENSMUSG00000014303.13 ENSMUSG00000014303 ENSMUST00000127120 Glis2 protein_coding Interval_13259 chr10 13684904 13685160 + 0 NA intron (ENSMUSG00000019806.13, intron 4 of 5) protein_coding-intron (ENSMUSG00000019806.13, intron 4 of 5) 57834 ENSMUSG00000112055.1 ENSMUSG00000112055 ENSMUST00000219684 Gm48773 lincRNA Interval_152119 chr7 129631407 129631764 + 0 NA intron (ENSMUSG00000042055.13, intron 15 of 18) protein_coding-intron (ENSMUSG00000042055.13, intron 24 of 28) 23778 ENSMUSG00000042055.13 ENSMUSG00000042055 ENSMUST00000136560 Wdr11 protein_coding Interval_35847 chr12 31217249 31218114 + 0 NA Intergenic Intergenic -16891 ENSMUSG00000112518.1 ENSMUSG00000112518 ENSMUST00000218421 Gm48117 processed_pseudogene Interval_156953 chr8 62250120 62251163 + 0 NA Intergenic Intergenic -56429 ENSMUSG00000110252.1 ENSMUSG00000110252 ENSMUST00000211074 Gm2961 processed_pseudogene Interval_152670 chr7 136046674 136047542 + 0 NA Intergenic Intergenic 94310 ENSMUSG00000098031.1 ENSMUSG00000098031 ENSMUST00000183000 Gm9341 processed_pseudogene Interval_137315 chr6 71259310 71259914 + 0 NA TTS (ENSMUSG00000055027.17) protein_coding-TTS (ENSMUSG00000055027.17) -12059 ENSMUSG00000098623.1 ENSMUSG00000098623 ENSMUST00000184382 Mir8112 miRNA Interval_157361 chr8 69869869 69870133 + 0 NA intron (ENSMUSG00000031860.17, intron 1 of 2) protein_coding-intron (ENSMUSG00000031860.17, intron 1 of 2) 17686 ENSMUSG00000044006.8 ENSMUSG00000044006 ENSMUST00000057831 Cilp2 protein_coding Interval_18813 chr10 91092518 91092823 + 0 NA intron (ENSMUSG00000019975.12, intron 2 of 2) protein_coding-intron (ENSMUSG00000019975.12, intron 1 of 2) -7760 ENSMUSG00000019975.12 ENSMUSG00000019975 ENSMUST00000211056 Ikbip protein_coding Interval_100465 chr2 169214462 169214757 + 0 NA Intergenic Intergenic -20382 ENSMUSG00000085369.1 ENSMUSG00000085369 ENSMUST00000152494 9430093N23Rik lincRNA Interval_146012 chr7 43113105 43114072 + 0 NA promoter-TSS (ENSMUSG00000064194.10) protein_coding-promoter-TSS (ENSMUSG00000064194.10) -641 ENSMUSG00000064194.10 ENSMUSG00000064194 ENSMUST00000072829 Zfp936 protein_coding Interval_94247 chr2 86365684 86368221 + 0 NA Intergenic Intergenic -4483 ENSMUSG00000075188.4 ENSMUSG00000075188 ENSMUST00000099893 Olfr1056 protein_coding Interval_85092 chr19 22733193 22733461 + 0 NA TTS (ENSMUSG00000052387.16) protein_coding-TTS (ENSMUSG00000052387.16) -17278 ENSMUSG00000065507.3 ENSMUSG00000065507 ENSMUST00000083573 Mir204 miRNA Interval_171363 chr9 117066733 117067149 + 0 NA intron (ENSMUSG00000039607.17, intron 4 of 15) protein_coding-intron (ENSMUSG00000039607.17, intron 2 of 12) 1414 ENSMUSG00000092516.1 ENSMUSG00000092516 ENSMUST00000174520 Gm20397 processed_pseudogene Interval_80491 chr18 42705262 42705806 + 0 NA intron (ENSMUSG00000024500.20, intron 5 of 9) protein_coding-intron (ENSMUSG00000024500.20, intron 4 of 8) -83075 ENSMUSG00000117926.1 ENSMUSG00000117926 ENSMUST00000236808 C030004G16Rik lincRNA Interval_162499 chr9 3365482 3365680 + 0 NA intron (ENSMUSG00000025899.14, intron 7 of 7) protein_coding-intron (ENSMUSG00000025899.14, intron 8 of 11) 12924 ENSMUSG00000064956.1 ENSMUSG00000064956 ENSMUST00000083022 Gm24918 snoRNA Interval_117026 chr4 119082662 119083259 + 0 NA Intergenic Intergenic -13849 ENSMUSG00000066060.5 ENSMUSG00000066060 ENSMUST00000128998 Gm12866 lincRNA Interval_17960 chr10 81082062 81083254 + 0 NA TTS (ENSMUSG00000004929.12) protein_coding-TTS (ENSMUSG00000004929.12) 9248 ENSMUSG00000035041.8 ENSMUSG00000035041 ENSMUST00000125907 Creb3l3 protein_coding Interval_159840 chr8 104247976 104248817 + 0 NA exon (ENSMUSG00000035824.7, exon 1 of 5) protein_coding-exon (ENSMUSG00000035824.7, exon 1 of 5) 136 ENSMUSG00000035824.7 ENSMUSG00000035824 ENSMUST00000212279 Tk2 protein_coding Interval_39426 chr12 87336086 87337070 + 0 NA intron (ENSMUSG00000021036.10, intron 2 of 5) protein_coding-intron (ENSMUSG00000021036.10, intron 8 of 11) -7965 ENSMUSG00000021036.10 ENSMUSG00000021036 ENSMUST00000167911 Sptlc2 protein_coding Interval_116479 chr4 114346179 114346544 + 0 NA Intergenic Intergenic -60363 ENSMUSG00000070867.4 ENSMUSG00000070867 ENSMUST00000094894 Trabd2b protein_coding Interval_141906 chr6 135260229 135262065 + 0 NA Intergenic Intergenic -6821 ENSMUSG00000030206.13 ENSMUSG00000030206 ENSMUST00000111910 Gsg1 protein_coding Interval_123505 chr5 33018181 33019858 + 0 NA promoter-TSS (ENSMUSG00000018965.11) protein_coding-promoter-TSS (ENSMUSG00000018965.11) 141 ENSMUSG00000018965.11 ENSMUSG00000018965 ENSMUST00000136667 Ywhah protein_coding Interval_38186 chr12 76254705 76256255 + 0 NA promoter-TSS (ENSMUSG00000021048.7) protein_coding-promoter-TSS (ENSMUSG00000021048.7) -146 ENSMUSG00000112274.1 ENSMUSG00000112274 ENSMUST00000220205 Gm47525 bidirectional_promoter_lncRNA Interval_9978 chr1 164493896 164495532 + 0 NA Intergenic Intergenic 5654 ENSMUSG00000103226.1 ENSMUSG00000103226 ENSMUST00000194377 Gm37732 processed_pseudogene Interval_48383 chr13 98643975 98644170 + 0 NA Intergenic Intergenic -6662 ENSMUSG00000046082.4 ENSMUSG00000046082 ENSMUST00000050389 Tmem174 protein_coding Interval_79735 chr18 34795069 34795390 + 0 NA exon (ENSMUSG00000038773.11, exon 3 of 4) protein_coding-exon (ENSMUSG00000038773.11, exon 3 of 4) -1666 ENSMUSG00000038773.11 ENSMUSG00000038773 ENSMUST00000223567 Kdm3b protein_coding Interval_93067 chr2 69907121 69908151 + 0 NA intron (ENSMUSG00000044308.17, intron 1 of 7) protein_coding-intron (ENSMUSG00000044308.17, intron 1 of 38) 21908 ENSMUSG00000085735.1 ENSMUSG00000085735 ENSMUST00000129114 Mettl5os antisense Interval_64133 chr16 8643713 8644565 + 0 NA exon (ENSMUSG00000022711.16, exon 2 of 2) protein_coding-exon (ENSMUSG00000022711.16, exon 2 of 2) 6383 ENSMUSG00000022711.16 ENSMUSG00000022711 ENSMUST00000131385 Pmm2 protein_coding Interval_80274 chr18 38693573 38693796 + 0 NA intron (ENSMUSG00000118193.1, intron 1 of 5) lincRNA-intron (ENSMUSG00000118257.1, intron 3 of 3) 16966 ENSMUSG00000118193.1 ENSMUSG00000118193 ENSMUST00000148850 Arhgap26 protein_coding Interval_79971 chr18 36363419 36363851 + 0 NA intron (ENSMUSG00000046727.13, intron 2 of 3) protein_coding-intron (ENSMUSG00000046727.13, intron 1 of 2) 21055 ENSMUSG00000046727.13 ENSMUSG00000046727 ENSMUST00000144158 Cystm1 protein_coding Interval_37801 chr12 72062033 72062762 + 0 NA Intergenic Intergenic 8728 ENSMUSG00000043398.5 ENSMUSG00000043398 ENSMUST00000050649 Gpr135 protein_coding Interval_5098 chr1 84912558 84913024 + 0 NA exon (ENSMUSG00000026220.6, exon 4 of 5) protein_coding-exon (ENSMUSG00000026220.6, exon 4 of 5) 22066 ENSMUSG00000026220.6 ENSMUSG00000026220 ENSMUST00000186980 Slc16a14 protein_coding Interval_109172 chr3 137556569 137556878 + 0 NA Intergenic Intergenic -4101 ENSMUSG00000055138.10 ENSMUSG00000055138 ENSMUST00000198629 Gm4861 lincRNA Interval_82109 chr18 67791395 67791744 + 0 NA intron (ENSMUSG00000118134.1, intron 1 of 3) protein_coding-intron (ENSMUSG00000079614.4, intron 7 of 8) 8374 ENSMUSG00000118134.1 ENSMUSG00000118134 ENSMUST00000237968 4930549G23Rik antisense Interval_79709 chr18 34657780 34658026 + 0 NA Intergenic Intergenic 10503 ENSMUSG00000064857.1 ENSMUSG00000064857 ENSMUST00000082923 n-R5s25 rRNA Interval_80622 chr18 44708304 44708544 + 0 NA intron (ENSMUSG00000071856.10, intron 3 of 18) protein_coding-intron (ENSMUSG00000071856.10, intron 3 of 18) -46140 ENSMUSG00000071856.10 ENSMUSG00000071856 ENSMUST00000201270 Mcc protein_coding Interval_61611 chr15 82941404 82942474 + 0 NA intron (ENSMUSG00000041852.15, intron 1 of 1) protein_coding-intron (ENSMUSG00000041852.15, intron 1 of 1) 17357 ENSMUSG00000092751.1 ENSMUSG00000092751 ENSMUST00000175010 Mir3080 miRNA Interval_139804 chr6 108852613 108852812 + 0 NA intron (ENSMUSG00000030104.9, intron 10 of 11) protein_coding-intron (ENSMUSG00000030104.9, intron 10 of 11) 24071 ENSMUSG00000030104.9 ENSMUSG00000030104 ENSMUST00000203302 Edem1 protein_coding Interval_52498 chr14 47086725 47087729 + 0 NA promoter-TSS (ENSMUSG00000021838.17) protein_coding-promoter-TSS (ENSMUSG00000021838.17) 28844 ENSMUSG00000072589.4 ENSMUSG00000072589 ENSMUST00000228010 Gm10371 antisense Interval_78073 chr18 7671401 7672822 + 0 NA Intergenic Intergenic 20615 ENSMUSG00000117542.1 ENSMUSG00000117542 ENSMUST00000234387 Gm18763 processed_pseudogene Interval_9047 chr1 153277083 153278185 + 0 NA intron (ENSMUSG00000026478.14, intron 1 of 27) protein_coding-intron (ENSMUSG00000026478.14, intron 1 of 27) 9556 ENSMUSG00000103818.1 ENSMUSG00000103818 ENSMUST00000194884 Gm38009 TEC Interval_170310 chr9 106842704 106843721 + 0 NA intron (ENSMUSG00000040325.16, intron 7 of 22) protein_coding-intron (ENSMUSG00000040325.16, intron 7 of 22) -7674 ENSMUSG00000040325.16 ENSMUSG00000040325 ENSMUST00000163657 Dcaf1 protein_coding Interval_30649 chr11 95680614 95682067 + 0 NA TTS (ENSMUSG00000038845.11) protein_coding-TTS (ENSMUSG00000038845.11) 14330 ENSMUSG00000038845.11 ENSMUSG00000038845 ENSMUST00000123001 Phb protein_coding Interval_117953 chr4 127305943 127306143 + 0 NA Intergenic Intergenic 7996 ENSMUSG00000050234.7 ENSMUSG00000050234 ENSMUST00000053753 Gja4 protein_coding Interval_98746 chr2 154647960 154649095 + 0 NA Intergenic Intergenic -3178 ENSMUSG00000038467.15 ENSMUSG00000038467 ENSMUST00000136788 Chmp4b protein_coding Interval_167664 chr9 71686631 71687765 + 0 NA intron (ENSMUSG00000032232.14, intron 7 of 17) protein_coding-intron (ENSMUSG00000032232.14, intron 8 of 18) -56089 ENSMUSG00000032232.14 ENSMUSG00000032232 ENSMUST00000146567 Cgnl1 protein_coding Interval_110128 chr3 153574116 153574467 + 0 NA intron (ENSMUSG00000052544.9, intron 1 of 4) protein_coding-intron (ENSMUSG00000052544.9, intron 1 of 2) -47411 ENSMUSG00000089376.1 ENSMUSG00000089376 ENSMUST00000158751 Gm22136 misc_RNA Interval_95880 chr2 117911635 117911889 + 0 NA intron (ENSMUSG00000087203.7, intron 8 of 9) processed_transcript-intron (ENSMUSG00000087203.7, intron 8 of 9) 89834 ENSMUSG00000086221.1 ENSMUSG00000086221 ENSMUST00000149239 4930412B13Rik lincRNA Interval_130429 chr5 127567168 127569237 + 0 NA Intergenic Intergenic -10548 ENSMUSG00000106015.1 ENSMUSG00000106015 ENSMUST00000200582 Gm42980 lincRNA Interval_109648 chr3 145729134 145730341 + 0 NA Intergenic Intergenic 9429 ENSMUSG00000105608.1 ENSMUSG00000105608 ENSMUST00000198263 Gm43408 processed_pseudogene Interval_159662 chr8 96278385 96278601 + 0 NA Intergenic Intergenic -31026 ENSMUSG00000110623.1 ENSMUSG00000110623 ENSMUST00000212446 Gm32005 lincRNA Interval_39962 chr12 100127453 100127666 + 0 NA intron (ENSMUSG00000021179.8, intron 1 of 1) protein_coding-intron (ENSMUSG00000021179.8, intron 12 of 13) 2213 ENSMUSG00000021179.8 ENSMUSG00000021179 ENSMUST00000221954 Nrde2 protein_coding Interval_109474 chr3 142764746 142765667 + 0 NA promoter-TSS (ENSMUSG00000028271.9) protein_coding-promoter-TSS (ENSMUSG00000028271.9) -17 ENSMUSG00000028271.9 ENSMUSG00000028271 ENSMUST00000196311 Gtf2b protein_coding Interval_75588 chr17 69006138 69007420 + 0 NA Intergenic Intergenic -120221 ENSMUSG00000024044.19 ENSMUSG00000024044 ENSMUST00000223565 Epb41l3 protein_coding Interval_67711 chr16 56163633 56164298 + 0 NA intron (ENSMUSG00000052917.15, intron 12 of 23) protein_coding-intron (ENSMUSG00000052917.15, intron 11 of 22) -14403 ENSMUSG00000116826.1 ENSMUSG00000116826 ENSMUST00000231653 Gm49682 processed_pseudogene Interval_53907 chr14 63255257 63256717 + 0 NA intron (ENSMUSG00000021944.15, intron 1 of 1) protein_coding-intron (ENSMUSG00000021944.15, intron 1 of 1) 15137 ENSMUSG00000021944.15 ENSMUSG00000021944 ENSMUST00000156782 Gata4 protein_coding Interval_132774 chr5 147788378 147788706 + 0 NA Intergenic Intergenic -33703 ENSMUSG00000107065.1 ENSMUSG00000107065 ENSMUST00000202661 Gm43155 processed_pseudogene Interval_140664 chr6 120378394 120378618 + 0 NA intron (ENSMUSG00000030180.15, intron 1 of 3) protein_coding-intron (ENSMUSG00000030180.15, intron 4 of 27) 2633 ENSMUSG00000084454.1 ENSMUSG00000084454 ENSMUST00000122505 Gm24592 snRNA Interval_137291 chr6 71113826 71114273 + 0 NA Intergenic Intergenic -7538 ENSMUSG00000107446.1 ENSMUSG00000107446 ENSMUST00000203194 Gm43906 TEC Interval_125299 chr5 66042414 66043102 + 0 NA intron (ENSMUSG00000070780.11, intron 1 of 4) protein_coding-intron (ENSMUSG00000070780.11, intron 3 of 5) 30137 ENSMUSG00000107304.1 ENSMUSG00000107304 ENSMUST00000201019 Gm43775 TEC Interval_136747 chr6 58956761 58957129 + 0 NA intron (ENSMUSG00000037709.13, intron 8 of 16) protein_coding-intron (ENSMUSG00000037709.13, intron 8 of 17) -7929 ENSMUSG00000107439.1 ENSMUSG00000107439 ENSMUST00000203293 Gm45060 antisense Interval_35831 chr12 30911151 30912686 + 0 NA promoter-TSS (ENSMUSG00000044573.16) protein_coding-promoter-TSS (ENSMUSG00000044573.16) 250 ENSMUSG00000020669.15 ENSMUSG00000020669 ENSMUST00000128814 Sh3yl1 protein_coding Interval_124243 chr5 42011757 42013877 + 0 NA Intergenic Intergenic -55143 ENSMUSG00000067285.4 ENSMUSG00000067285 ENSMUST00000087332 Gm16223 protein_coding Interval_55698 chr14 99107599 99109403 + 0 NA TTS (ENSMUSG00000022064.10) protein_coding-TTS (ENSMUSG00000022064.10) -3176 ENSMUSG00000115071.1 ENSMUSG00000115071 ENSMUST00000226897 Gm49026 TEC Interval_143982 chr7 18754608 18755969 + 0 NA Intergenic Intergenic -5570 ENSMUSG00000109234.1 ENSMUSG00000109234 ENSMUST00000208869 Gm44561 unprocessed_pseudogene Interval_168746 chr9 86658707 86659056 + 0 NA intron (ENSMUSG00000032418.15, intron 3 of 13) protein_coding-intron (ENSMUSG00000032418.15, intron 3 of 13) 26327 ENSMUSG00000102259.1 ENSMUSG00000102259 ENSMUST00000193572 Gm38230 TEC Interval_10162 chr1 166253260 166254897 + 0 NA promoter-TSS (ENSMUSG00000040612.13) protein_coding-promoter-TSS (ENSMUSG00000040612.13) -115 ENSMUSG00000040612.13 ENSMUSG00000040612 ENSMUST00000193860 Ildr2 protein_coding Interval_145944 chr7 42551213 42552650 + 0 NA Intergenic Intergenic 26304 ENSMUSG00000108446.1 ENSMUSG00000108446 ENSMUST00000205775 Gm44997 processed_transcript Interval_12997 chr10 9012926 9013249 + 0 NA Intergenic Intergenic 58388 ENSMUSG00000111077.1 ENSMUSG00000111077 ENSMUST00000216441 Gm48743 TEC Interval_76303 chr17 78915727 78917095 + 0 NA promoter-TSS (ENSMUSG00000062691.10) protein_coding-promoter-TSS (ENSMUSG00000062691.10) -289 ENSMUSG00000062691.10 ENSMUSG00000062691 ENSMUST00000192288 Cebpzos protein_coding Interval_136007 chr6 49416147 49416903 + 0 NA intron (ENSMUSG00000023403.14, intron 6 of 23) protein_coding-intron (ENSMUSG00000023403.14, intron 6 of 23) 8359 ENSMUSG00000090624.1 ENSMUSG00000090624 ENSMUST00000172394 Gm17060 processed_pseudogene Interval_148263 chr7 80160236 80161321 + 0 NA Intergenic Intergenic 5609 ENSMUSG00000108757.1 ENSMUSG00000108757 ENSMUST00000205955 Gm45202 lincRNA Interval_109766 chr3 146749195 146749653 + 0 NA intron (ENSMUSG00000005034.15, intron 5 of 5) protein_coding-intron (ENSMUSG00000005034.15, intron 5 of 9) 15146 ENSMUSG00000005034.15 ENSMUSG00000005034 ENSMUST00000196344 Prkacb protein_coding Interval_78536 chr18 14572753 14573229 + 0 NA Intergenic Intergenic 2844 ENSMUSG00000053740.8 ENSMUSG00000053740 ENSMUST00000066378 Gm6457 processed_pseudogene Interval_62206 chr15 88808029 88809190 + 0 NA intron (ENSMUSG00000035845.17, intron 5 of 7) protein_coding-intron (ENSMUSG00000035845.17, intron 5 of 7) 10709 ENSMUSG00000035845.17 ENSMUSG00000035845 ENSMUST00000159328 Alg12 protein_coding Interval_156795 chr8 60347876 60348790 + 0 NA Intergenic Intergenic 152531 ENSMUSG00000109966.1 ENSMUSG00000109966 ENSMUST00000210900 Gm34623 lincRNA Interval_94294 chr2 87560270 87560948 + 0 NA exon (ENSMUSG00000081132.1, exon 1 of 1) processed_pseudogene-exon (ENSMUSG00000081132.1, exon 1 of 1) 160 ENSMUSG00000081132.1 ENSMUSG00000081132 ENSMUST00000118953 Gm13744 processed_pseudogene Interval_25118 chr11 44279831 44280126 + 0 NA Intergenic Intergenic -12769 ENSMUSG00000086738.1 ENSMUSG00000086738 ENSMUST00000145584 Gm12154 lincRNA Interval_105640 chr3 88291816 88292211 + 0 NA intron (ENSMUSG00000010538.14, intron 2 of 3) protein_coding-intron (ENSMUSG00000010538.14, intron 2 of 3) -4803 ENSMUSG00000103766.5 ENSMUSG00000103766 ENSMUST00000163277 Gm38392 protein_coding Interval_8354 chr1 137843687 137843888 + 0 NA Intergenic Intergenic 31938 ENSMUSG00000104112.1 ENSMUSG00000104112 ENSMUST00000191658 Gm37293 TEC Interval_83228 chr18 82880661 82881697 + 0 NA Intergenic Intergenic -20899 ENSMUSG00000117762.1 ENSMUSG00000117762 ENSMUST00000236957 Gm30889 lincRNA Interval_6964 chr1 121430773 121432154 + 0 NA intron (ENSMUSG00000026339.18, intron 1 of 5) protein_coding-intron (ENSMUSG00000026339.18, intron 1 of 23) 388 ENSMUSG00000026339.18 ENSMUSG00000026339 ENSMUST00000152959 Ccdc93 protein_coding Interval_46450 chr13 66263134 66264612 + 0 NA intron (ENSMUSG00000114616.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000114616.1, intron 1 of 2) -8334 ENSMUSG00000114027.1 ENSMUSG00000114027 ENSMUST00000222960 Vmn2r-ps103 unprocessed_pseudogene Interval_162536 chr9 4004823 4005069 + 0 NA Intergenic Intergenic -208976 ENSMUSG00000110691.1 ENSMUSG00000110691 ENSMUST00000211927 Gm5363 processed_pseudogene Interval_172967 chrX 58029366 58032486 + 0 NA promoter-TSS (ENSMUSG00000067860.11) protein_coding-promoter-TSS (ENSMUSG00000067860.11) 8226 ENSMUSG00000067860.11 ENSMUSG00000067860 ENSMUST00000088629 Zic3 protein_coding Interval_172538 chrX 36110629 36112751 + 0 NA promoter-TSS (ENSMUSG00000017057.9) protein_coding-promoter-TSS (ENSMUSG00000017057.9) -420 ENSMUSG00000017057.9 ENSMUSG00000017057 ENSMUST00000033418 Il13ra1 protein_coding Interval_7711 chr1 133208802 133210462 + 0 NA intron (ENSMUSG00000041757.17, intron 1 of 22) protein_coding-intron (ENSMUSG00000041757.17, intron 1 of 22) -46910 ENSMUSG00000041757.17 ENSMUSG00000041757 ENSMUST00000190208 Plekha6 protein_coding Interval_31899 chr11 103697280 103698344 + 0 NA promoter-TSS (ENSMUSG00000020946.13) protein_coding-promoter-TSS (ENSMUSG00000020946.13) 88 ENSMUSG00000085154.7 ENSMUSG00000085154 ENSMUST00000129780 C130046K22Rik processed_transcript Interval_106560 chr3 97226578 97228350 + 0 NA promoter-TSS (ENSMUSG00000038256.15) protein_coding-promoter-TSS (ENSMUSG00000038256.15) -34891 ENSMUSG00000106536.1 ENSMUSG00000106536 ENSMUST00000199972 Gm42508 TEC Interval_52231 chr14 40893966 40894868 + 0 NA Intergenic Intergenic -1151 ENSMUSG00000037833.14 ENSMUSG00000037833 ENSMUST00000225854 Sh2d4b protein_coding Interval_95456 chr2 109735103 109735369 + 0 NA Intergenic Intergenic 42209 ENSMUSG00000048482.14 ENSMUSG00000048482 ENSMUST00000111042 Bdnf protein_coding Interval_48794 chr13 103333409 103335030 + 0 NA promoter-TSS (ENSMUSG00000034751.17) protein_coding-promoter-TSS (ENSMUSG00000034751.17) -22033 ENSMUSG00000047643.5 ENSMUSG00000047643 ENSMUST00000052030 Gm5454 processed_pseudogene Interval_144704 chr7 27639570 27640686 + 0 NA TTS (ENSMUSG00000004056.15) protein_coding-TTS (ENSMUSG00000004056.15) -2970 ENSMUSG00000118518.1 ENSMUSG00000118518 ENSMUST00000239103 AC074312.1 unitary_pseudogene Interval_140402 chr6 117870873 117872242 + 0 NA TTS (ENSMUSG00000042097.17) protein_coding-TTS (ENSMUSG00000042097.17) 8480 ENSMUSG00000042097.17 ENSMUSG00000042097 ENSMUST00000112857 Zfp239 protein_coding Interval_99164 chr2 157691423 157692521 + 0 NA Intergenic Intergenic 21829 ENSMUSG00000077290.1 ENSMUSG00000077290 ENSMUST00000104102 Gm25407 snoRNA Interval_2154 chr1 36757669 36759412 + 0 NA TTS (ENSMUSG00000102416.4) protein_coding-TTS (ENSMUSG00000102416.4) 6632 ENSMUSG00000097291.1 ENSMUSG00000097291 ENSMUST00000180475 Gm18828 transcribed_processed_pseudogene Interval_105401 chr3 85993619 85994875 + 0 NA intron (ENSMUSG00000049013.3, intron 5 of 5) protein_coding-intron (ENSMUSG00000049013.3, intron 5 of 5) 8244 ENSMUSG00000049013.3 ENSMUSG00000049013 ENSMUST00000061343 Prss48 protein_coding Interval_73275 chr17 35930925 35931164 + 0 NA intron (ENSMUSG00000039220.16, intron 19 of 19) protein_coding-intron (ENSMUSG00000039220.16, intron 18 of 18) 4906 ENSMUSG00000049832.6 ENSMUSG00000049832 ENSMUST00000173786 Rbx1-ps processed_pseudogene Interval_95215 chr2 104849013 104849957 + 0 NA promoter-TSS (ENSMUSG00000027171.10) protein_coding-promoter-TSS (ENSMUSG00000027171.10) 8 ENSMUSG00000027171.10 ENSMUSG00000027171 ENSMUST00000126824 Prrg4 protein_coding Interval_43012 chr13 23024404 23025482 + 0 NA Intergenic Intergenic 1692 ENSMUSG00000082656.1 ENSMUSG00000082656 ENSMUST00000117767 Vmn1r-ps125 unprocessed_pseudogene Interval_29057 chr11 80098020 80099858 + 0 NA intron (ENSMUSG00000017550.14, intron 3 of 22) protein_coding-intron (ENSMUSG00000017550.14, intron 3 of 22) -4064 ENSMUSG00000017550.14 ENSMUSG00000017550 ENSMUST00000154168 Atad5 protein_coding Interval_112842 chr4 45464616 45465559 + 0 NA intron (ENSMUSG00000044813.15, intron 2 of 2) protein_coding-intron (ENSMUSG00000044813.15, intron 2 of 5) 17715 ENSMUSG00000044813.15 ENSMUSG00000044813 ENSMUST00000147448 Shb protein_coding Interval_91166 chr2 35620474 35620724 + 0 NA intron (ENSMUSG00000026883.17, intron 1 of 16) protein_coding-intron (ENSMUSG00000026883.17, intron 1 of 16) -62114 ENSMUSG00000086555.2 ENSMUSG00000086555 ENSMUST00000134679 Gm13446 processed_transcript Interval_96614 chr2 126535515 126535923 + 0 NA Intergenic Intergenic -29041 ENSMUSG00000027359.16 ENSMUSG00000027359 ENSMUST00000150947 Slc27a2 protein_coding Interval_3456 chr1 58496613 58496786 + 0 NA intron (ENSMUSG00000026037.14, intron 2 of 4) protein_coding-intron (ENSMUSG00000026037.14, intron 5 of 17) 8256 ENSMUSG00000026037.14 ENSMUSG00000026037 ENSMUST00000191206 Orc2 protein_coding Interval_66195 chr16 32261972 32262506 + 0 NA Intergenic Intergenic 5344 ENSMUSG00000088985.1 ENSMUSG00000088985 ENSMUST00000158360 Mir1946a miRNA Interval_87795 chr19 55914669 55915886 + 0 NA intron (ENSMUSG00000024985.20, intron 8 of 14) protein_coding-intron (ENSMUSG00000024985.20, intron 7 of 11) 73605 ENSMUSG00000099746.1 ENSMUSG00000099746 ENSMUST00000190974 Ppnr sense_intronic Interval_6197 chr1 101302232 101302803 + 0 NA Intergenic Intergenic -69111 ENSMUSG00000100088.1 ENSMUSG00000100088 ENSMUST00000188761 Gm28801 processed_pseudogene Interval_129403 chr5 119758942 119759355 + 0 NA Intergenic Intergenic 48721 ENSMUSG00000107053.1 ENSMUSG00000107053 ENSMUST00000202127 1700021F13Rik lincRNA Interval_77021 chr17 85687575 85688951 + 0 NA promoter-TSS (ENSMUSG00000024134.11) protein_coding-promoter-TSS (ENSMUSG00000024134.11) 11 ENSMUSG00000024134.11 ENSMUSG00000024134 ENSMUST00000024947 Six2 protein_coding Interval_13895 chr10 24381765 24382275 + 0 NA Intergenic Intergenic -65470 ENSMUSG00000086148.1 ENSMUSG00000086148 ENSMUST00000134627 Gm15271 lincRNA Interval_31796 chr11 102924528 102925931 + 0 NA promoter-TSS (ENSMUSG00000051378.10) protein_coding-promoter-TSS (ENSMUSG00000051378.10) -141 ENSMUSG00000051378.10 ENSMUSG00000051378 ENSMUST00000132502 Kif18b protein_coding Interval_61593 chr15 82843182 82843491 + 0 NA intron (ENSMUSG00000041852.15, intron 2 of 5) protein_coding-intron (ENSMUSG00000041852.15, intron 2 of 4) -39372 ENSMUSG00000116280.1 ENSMUSG00000116280 ENSMUST00000229945 Gm49435 unprocessed_pseudogene Interval_158034 chr8 78189774 78190940 + 0 NA Intergenic Intergenic 7492 ENSMUSG00000110328.1 ENSMUSG00000110328 ENSMUST00000210921 Gm45574 processed_pseudogene Interval_50024 chr13 119790030 119791703 + 0 NA promoter-TSS (ENSMUSG00000094870.8) protein_coding-promoter-TSS (ENSMUSG00000094870.8) -7956 ENSMUSG00000094870.8 ENSMUSG00000094870 ENSMUST00000223812 Zfp131 protein_coding Interval_92448 chr2 59775244 59776249 + 0 NA intron (ENSMUSG00000035168.16, intron 6 of 25) protein_coding-intron (ENSMUSG00000035168.16, intron 7 of 26) -30322 ENSMUSG00000035168.16 ENSMUSG00000035168 ENSMUST00000147650 Tanc1 protein_coding Interval_131491 chr5 137532984 137533847 + 0 NA promoter-TSS (ENSMUSG00000029713.15) protein_coding-promoter-TSS (ENSMUSG00000029713.15) -211 ENSMUSG00000029713.15 ENSMUSG00000029713 ENSMUST00000140139 Gnb2 protein_coding Interval_37962 chr12 73384970 73385494 + 0 NA intron (ENSMUSG00000056359.6, intron 2 of 3) lincRNA-intron (ENSMUSG00000056359.6, intron 2 of 3) 24325 ENSMUSG00000056359.6 ENSMUSG00000056359 ENSMUST00000221180 D830013O20Rik lincRNA Interval_67586 chr16 51521443 51521970 + 0 NA Intergenic Intergenic -104758 ENSMUSG00000116855.1 ENSMUSG00000116855 ENSMUST00000232313 Gm49608 processed_pseudogene Interval_63201 chr15 99707755 99708245 + 0 NA TTS (ENSMUSG00000023018.5) protein_coding-TTS (ENSMUSG00000023018.5) 120 ENSMUSG00000023018.5 ENSMUSG00000023018 ENSMUST00000230748 Smarcd1 protein_coding Interval_91568 chr2 43568602 43568988 + 0 NA intron (ENSMUSG00000026866.16, intron 2 of 12) protein_coding-intron (ENSMUSG00000026866.16, intron 2 of 13) -49397 ENSMUSG00000080994.2 ENSMUSG00000080994 ENSMUST00000119418 Gm13464 processed_pseudogene Interval_15276 chr10 44037947 44038697 + 0 NA intron (ENSMUSG00000019866.15, intron 2 of 21) protein_coding-intron (ENSMUSG00000019866.15, intron 2 of 21) 20456 ENSMUSG00000019866.15 ENSMUSG00000019866 ENSMUST00000239010 Crybg1 protein_coding Interval_14529 chr10 34995009 34995472 + 0 NA intron (ENSMUSG00000111042.1, intron 2 of 3) transcribed_processed_pseudogene-intron (ENSMUSG00000111042.1, intron 2 of 3) 96984 ENSMUSG00000110935.1 ENSMUSG00000110935 ENSMUST00000216459 Gm8834 processed_pseudogene Interval_120484 chr4 148900240 148901652 + 0 NA promoter-TSS (ENSMUSG00000028977.17) protein_coding-promoter-TSS (ENSMUSG00000028977.17) 13378 ENSMUSG00000086766.1 ENSMUSG00000086766 ENSMUST00000151967 Gm15969 antisense Interval_38091 chr12 75605588 75605811 + 0 NA Intergenic Intergenic -9454 ENSMUSG00000021051.10 ENSMUSG00000021051 ENSMUST00000218930 Ppp2r5e protein_coding Interval_48925 chr13 104916546 104917015 + 0 NA Intergenic Intergenic -2000 ENSMUSG00000114326.1 ENSMUSG00000114326 ENSMUST00000171334 Gm4938 processed_pseudogene Interval_64190 chr16 8938662 8939769 + 0 NA Intergenic Intergenic -5698 ENSMUSG00000116525.1 ENSMUSG00000116525 ENSMUST00000230927 Gm30371 lincRNA Interval_169163 chr9 94736892 94738078 + 0 NA intron (ENSMUSG00000031129.9, intron 4 of 15) protein_coding-intron (ENSMUSG00000031129.9, intron 4 of 15) -14344 ENSMUSG00000098251.1 ENSMUSG00000098251 ENSMUST00000183864 Mir7656 miRNA Interval_89956 chr2 26826119 26828299 + 0 NA Intergenic Intergenic 29589 ENSMUSG00000015787.15 ENSMUSG00000015787 ENSMUST00000102900 Abo protein_coding Interval_31614 chr11 101728079 101728793 + 0 NA Intergenic Intergenic -4593 ENSMUSG00000034931.15 ENSMUSG00000034931 ENSMUST00000141461 Dhx8 protein_coding Interval_112961 chr4 46483145 46483994 + 0 NA Intergenic Intergenic -5805 ENSMUSG00000028334.10 ENSMUSG00000028334 ENSMUST00000137874 Nans protein_coding Interval_150247 chr7 108960833 108961220 + 0 NA intron (ENSMUSG00000031028.14, intron 1 of 3) protein_coding-intron (ENSMUSG00000031028.14, intron 1 of 3) 10369 ENSMUSG00000031028.14 ENSMUSG00000031028 ENSMUST00000147943 Tub protein_coding Interval_126242 chr5 83852004 83852500 + 0 NA Intergenic Intergenic -10911 ENSMUSG00000106576.1 ENSMUSG00000106576 ENSMUST00000197408 Gm4866 unprocessed_pseudogene Interval_166962 chr9 64171662 64173984 + 0 NA promoter-TSS (ENSMUSG00000032399.8) protein_coding-promoter-TSS (ENSMUSG00000032399.8) 90 ENSMUSG00000032400.18 ENSMUSG00000032400 ENSMUST00000151428 Zwilch protein_coding Interval_121718 chr5 5686838 5687775 + 0 NA intron (ENSMUSG00000015653.13, intron 1 of 3) protein_coding-intron (ENSMUSG00000015653.13, intron 1 of 5) -4243 ENSMUSG00000015653.13 ENSMUSG00000015653 ENSMUST00000150238 Steap2 protein_coding Interval_63818 chr16 3729242 3729491 + 0 NA Intergenic Intergenic -1144 ENSMUSG00000095834.2 ENSMUSG00000095834 ENSMUST00000179882 Tdgf1-ps1 processed_pseudogene Interval_29027 chr11 79973627 79974658 + 0 NA Intergenic Intergenic -11775 ENSMUSG00000035575.11 ENSMUSG00000035575 ENSMUST00000146127 Utp6 protein_coding Interval_91672 chr2 46954729 46954926 + 0 NA Intergenic Intergenic -347744 ENSMUSG00000089144.1 ENSMUSG00000089144 ENSMUST00000158519 Gm25264 snoRNA Interval_110616 chr4 4759655 4760382 + 0 NA Intergenic Intergenic 30445 ENSMUSG00000095971.1 ENSMUSG00000095971 ENSMUST00000180325 Gm26436 snoRNA Interval_89467 chr2 20825452 20825818 + 0 NA Intergenic Intergenic 34161 ENSMUSG00000036591.16 ENSMUSG00000036591 ENSMUST00000173654 Arhgap21 protein_coding Interval_21579 chr10 130223805 130224591 + 0 NA Intergenic Intergenic -9795 ENSMUSG00000045559.6 ENSMUSG00000045559 ENSMUST00000058123 Olfr827 protein_coding Interval_149057 chr7 92743015 92743631 + 0 NA intron (ENSMUSG00000030643.14, intron 1 of 3) protein_coding-intron (ENSMUSG00000030643.14, intron 1 of 4) -1855 ENSMUSG00000074024.5 ENSMUSG00000074024 ENSMUST00000182408 4632427E13Rik bidirectional_promoter_lncRNA Interval_160722 chr8 111810375 111811459 + 0 NA intron (ENSMUSG00000031954.6, intron 5 of 6) protein_coding-intron (ENSMUSG00000031954.6, intron 5 of 6) 43374 ENSMUSG00000031954.6 ENSMUSG00000031954 ENSMUST00000034432 Cfdp1 protein_coding Interval_50293 chr14 11702561 11703597 + 0 NA intron (ENSMUSG00000021745.14, intron 1 of 3) protein_coding-intron (ENSMUSG00000021745.14, intron 1 of 29) -64864 ENSMUSG00000114310.1 ENSMUSG00000114310 ENSMUST00000225152 Gm48602 TEC Interval_61440 chr15 81646601 81647107 + 0 NA intron (ENSMUSG00000055024.12, intron 1 of 2) protein_coding-intron (ENSMUSG00000055024.12, intron 29 of 30) 9545 ENSMUSG00000116516.1 ENSMUSG00000116516 ENSMUST00000230244 Gm49444 processed_pseudogene Interval_44637 chr13 46838425 46838803 + 0 NA intron (ENSMUSG00000021375.11, intron 4 of 25) protein_coding-intron (ENSMUSG00000021375.11, intron 4 of 37) -29557 ENSMUSG00000021375.11 ENSMUSG00000021375 ENSMUST00000224923 Kif13a protein_coding Interval_14898 chr10 40918355 40919625 + 0 NA intron (ENSMUSG00000019831.14, intron 1 of 8) protein_coding-intron (ENSMUSG00000019831.14, intron 1 of 8) 35163 ENSMUSG00000019831.14 ENSMUSG00000019831 ENSMUST00000105509 Wasf1 protein_coding Interval_9677 chr1 160963182 160963570 + 0 NA intron (ENSMUSG00000040423.11, intron 16 of 20) protein_coding-intron (ENSMUSG00000040423.11, intron 14 of 18) -15312 ENSMUSG00000026715.12 ENSMUSG00000026715 ENSMUST00000194455 Serpinc1 protein_coding Interval_152761 chr7 137317068 137317539 + 0 NA Intergenic Intergenic -3317 ENSMUSG00000010476.14 ENSMUSG00000010476 ENSMUST00000209864 Ebf3 protein_coding Interval_120882 chr4 151283036 151283734 + 0 NA intron (ENSMUSG00000014592.21, intron 6 of 24) protein_coding-intron (ENSMUSG00000014592.21, intron 6 of 23) -93085 ENSMUSG00000085593.1 ENSMUSG00000085593 ENSMUST00000129097 4930589P08Rik antisense Interval_85051 chr19 21809091 21809291 + 0 NA intron (ENSMUSG00000024754.13, intron 7 of 24) protein_coding-intron (ENSMUSG00000024754.13, intron 6 of 23) 24565 ENSMUSG00000118021.1 ENSMUSG00000118021 ENSMUST00000237423 Gm50130 antisense Interval_32117 chr11 105327607 105328997 + 0 NA promoter-TSS (ENSMUSG00000020695.14) protein_coding-promoter-TSS (ENSMUSG00000020695.14) -12530 ENSMUSG00000020695.14 ENSMUSG00000020695 ENSMUST00000151135 Mrc2 protein_coding Interval_162542 chr9 4047384 4048499 + 0 NA Intergenic Intergenic -165981 ENSMUSG00000110691.1 ENSMUSG00000110691 ENSMUST00000211927 Gm5363 processed_pseudogene Interval_6498 chr1 112456024 112456215 + 0 NA Intergenic Intergenic -11792 ENSMUSG00000088691.1 ENSMUSG00000088691 ENSMUST00000158066 Gm22331 snoRNA Interval_71419 chr17 23633628 23634105 + 0 NA intron (ENSMUSG00000023903.8, intron 4 of 9) protein_coding-intron (ENSMUSG00000023903.8, intron 4 of 9) -2730 ENSMUSG00000117108.1 ENSMUSG00000117108 ENSMUST00000233781 Gm49935 processed_pseudogene Interval_9715 chr1 161237217 161238282 + 0 NA TTS (ENSMUSG00000102817.2) transcribed_unprocessed_pseudogene-TTS (ENSMUSG00000102817.2) 13413 ENSMUSG00000026701.15 ENSMUSG00000026701 ENSMUST00000130867 Prdx6 protein_coding Interval_129087 chr5 117330432 117330640 + 0 NA intron (ENSMUSG00000066894.14, intron 2 of 8) protein_coding-intron (ENSMUSG00000066894.14, intron 2 of 8) 6890 ENSMUSG00000066894.14 ENSMUSG00000066894 ENSMUST00000139026 Vsig10 protein_coding Interval_122168 chr5 18564163 18566450 + 0 NA Intergenic Intergenic -75112 ENSMUSG00000104718.1 ENSMUSG00000104718 ENSMUST00000199456 Gm31752 lincRNA Interval_166980 chr9 64288826 64289045 + 0 NA intron (ENSMUSG00000032397.7, intron 2 of 7) protein_coding-intron (ENSMUSG00000032397.7, intron 2 of 7) -6996 ENSMUSG00000088254.1 ENSMUSG00000088254 ENSMUST00000157629 Gm24289 scaRNA Interval_30425 chr11 94287495 94287946 + 0 NA TTS (ENSMUSG00000020863.15) protein_coding-TTS (ENSMUSG00000020863.15) 5847 ENSMUSG00000094091.3 ENSMUSG00000094091 ENSMUST00000178891 Gm21885 protein_coding Interval_43759 chr13 36139341 36139731 + 0 NA intron (ENSMUSG00000021420.13, intron 1 of 6) protein_coding-intron (ENSMUSG00000021420.13, intron 1 of 6) -22010 ENSMUSG00000046573.7 ENSMUSG00000046573 ENSMUST00000053265 Lyrm4 protein_coding Interval_163021 chr9 14601583 14602078 + 0 NA intron (ENSMUSG00000013076.17, intron 2 of 13) protein_coding-intron (ENSMUSG00000013076.17, intron 1 of 12) 17735 ENSMUSG00000111540.1 ENSMUSG00000111540 ENSMUST00000216646 4930584E12Rik TEC Interval_4840 chr1 80169782 80170043 + 0 NA Intergenic Intergenic -14807 ENSMUSG00000099552.1 ENSMUSG00000099552 ENSMUST00000185548 9830004L10Rik lincRNA Interval_114693 chr4 83881628 83883049 + 0 NA Intergenic Intergenic 6520 ENSMUSG00000085378.1 ENSMUSG00000085378 ENSMUST00000128214 Gm11415 lincRNA Interval_133131 chr5 150061970 150062180 + 0 NA intron (ENSMUSG00000053368.13, intron 12 of 16) protein_coding-intron (ENSMUSG00000053368.13, intron 13 of 17) 20720 ENSMUSG00000107384.1 ENSMUSG00000107384 ENSMUST00000202037 Gm42557 antisense Interval_13515 chr10 18910634 18911192 + 0 NA Intergenic Intergenic -23884 ENSMUSG00000111318.1 ENSMUSG00000111318 ENSMUST00000214387 Gm48483 lincRNA Interval_125338 chr5 66295434 66296654 + 0 NA exon (ENSMUSG00000029206.13, exon 11 of 11) protein_coding-exon (ENSMUSG00000029206.13, exon 11 of 11) 26973 ENSMUSG00000106818.1 ENSMUSG00000106818 ENSMUST00000202694 Gm43790 TEC Interval_121270 chr4 154543180 154544290 + 0 NA intron (ENSMUSG00000039410.16, intron 1 of 2) protein_coding-intron (ENSMUSG00000039410.16, intron 1 of 16) -6547 ENSMUSG00000086565.1 ENSMUSG00000086565 ENSMUST00000143888 Gm13133 antisense Interval_14155 chr10 28151577 28151935 + 0 NA intron (ENSMUSG00000019889.10, intron 1 of 2) protein_coding-intron (ENSMUSG00000019889.10, intron 1 of 31) 62365 ENSMUSG00000076377.1 ENSMUSG00000076377 ENSMUST00000102422 Gm22370 miRNA Interval_117878 chr4 126842852 126843485 + 0 NA intron (ENSMUSG00000028830.14, intron 16 of 23) protein_coding-intron (ENSMUSG00000028830.14, intron 16 of 20) 7889 ENSMUSG00000028830.14 ENSMUSG00000028830 ENSMUST00000125225 AU040320 protein_coding Interval_6337 chr1 106029861 106031037 + 0 NA exon (ENSMUSG00000038866.15, exon 13 of 14) protein_coding-exon (ENSMUSG00000038866.15, exon 13 of 14) 26312 ENSMUSG00000038866.15 ENSMUSG00000038866 ENSMUST00000131830 Zcchc2 protein_coding Interval_26885 chr11 61296154 61297778 + 0 NA Intergenic Intergenic -37795 ENSMUSG00000064718.1 ENSMUSG00000064718 ENSMUST00000082784 Gm25929 snRNA Interval_101222 chr2 179570693 179571628 + 0 NA intron (ENSMUSG00000000305.12, intron 2 of 2) protein_coding-intron (ENSMUSG00000000305.12, intron 2 of 15) 42407 ENSMUSG00000083410.1 ENSMUSG00000083410 ENSMUST00000120800 Gm14300 processed_pseudogene Interval_56408 chr14 118566121 118567058 + 0 NA intron (ENSMUSG00000032849.14, intron 18 of 29) protein_coding-intron (ENSMUSG00000032849.14, intron 19 of 30) 2517 ENSMUSG00000115075.1 ENSMUSG00000115075 ENSMUST00000227627 Gm49033 processed_pseudogene Interval_92596 chr2 61138996 61139289 + 0 NA Intergenic Intergenic -85650 ENSMUSG00000083197.1 ENSMUSG00000083197 ENSMUST00000120675 Gm13581 processed_pseudogene Interval_156735 chr8 57724629 57725519 + 0 NA intron (ENSMUSG00000110162.1, intron 2 of 2) lincRNA-intron (ENSMUSG00000110162.1, intron 2 of 2) 25300 ENSMUSG00000110162.1 ENSMUSG00000110162 ENSMUST00000209274 Gm45356 lincRNA Interval_154694 chr8 22631330 22632061 + 0 NA intron (ENSMUSG00000031536.6, intron 11 of 13) protein_coding-intron (ENSMUSG00000031536.6, intron 11 of 13) 7652 ENSMUSG00000031535.7 ENSMUSG00000031535 ENSMUST00000033936 Dkk4 protein_coding Interval_36493 chr12 46253575 46254662 + 0 NA Intergenic Intergenic 19766 ENSMUSG00000112915.1 ENSMUSG00000112915 ENSMUST00000219862 Gm18112 unprocessed_pseudogene Interval_54816 chr14 75415208 75416342 + 0 NA Intergenic Intergenic -15329 ENSMUSG00000115615.1 ENSMUSG00000115615 ENSMUST00000227736 Gm49200 lincRNA Interval_100695 chr2 171706798 171707074 + 0 NA Intergenic Intergenic 255195 ENSMUSG00000086823.7 ENSMUSG00000086823 ENSMUST00000125465 1700028P15Rik processed_transcript Interval_122454 chr5 22969667 22970039 + 0 NA intron (ENSMUSG00000106379.1, intron 1 of 3) protein_coding-intron (ENSMUSG00000106379.1, intron 1 of 3) -37840 ENSMUSG00000060879.3 ENSMUSG00000060879 ENSMUST00000075377 Gm6564 processed_pseudogene Interval_94214 chr2 85196608 85196950 + 0 NA promoter-TSS (ENSMUSG00000075224.10) protein_coding-promoter-TSS (ENSMUSG00000075224.10) -80 ENSMUSG00000075224.10 ENSMUSG00000075224 ENSMUST00000234267 Lrrc55 protein_coding Interval_24918 chr11 41285289 41285520 + 0 NA Intergenic Intergenic 66567 ENSMUSG00000086475.1 ENSMUSG00000086475 ENSMUST00000133945 Platr13 lincRNA Interval_82818 chr18 77187613 77187893 + 0 NA intron (ENSMUSG00000025425.18, intron 1 of 6) protein_coding-intron (ENSMUSG00000025425.18, intron 1 of 7) -1390 ENSMUSG00000073532.3 ENSMUSG00000073532 ENSMUST00000097520 Gm7276 bidirectional_promoter_lncRNA Interval_96386 chr2 122097103 122098369 + 0 NA intron (ENSMUSG00000033396.13, intron 9 of 12) protein_coding-intron (ENSMUSG00000033396.13, intron 9 of 39) 20639 ENSMUSG00000033396.13 ENSMUSG00000033396 ENSMUST00000135847 Spg11 protein_coding Interval_164130 chr9 31758155 31758474 + 0 NA Intergenic Intergenic -24670 ENSMUSG00000110778.1 ENSMUSG00000110778 ENSMUST00000217443 Gm8171 processed_pseudogene Interval_102784 chr3 31004717 31005405 + 0 NA promoter-TSS (ENSMUSG00000037643.14) protein_coding-promoter-TSS (ENSMUSG00000037643.14) 30412 ENSMUSG00000102741.1 ENSMUSG00000102741 ENSMUST00000193442 Gm2979 processed_pseudogene Interval_3573 chr1 59663205 59664068 + 0 NA intron (ENSMUSG00000026021.15, intron 1 of 3) protein_coding-intron (ENSMUSG00000026021.15, intron 1 of 4) 7156 ENSMUSG00000026021.15 ENSMUSG00000026021 ENSMUST00000123857 Sumo1 protein_coding Interval_169002 chr9 90133006 90135232 + 0 NA Intergenic Intergenic 15182 ENSMUSG00000096647.2 ENSMUSG00000096647 ENSMUST00000178436 Tmem41b-ps processed_pseudogene Interval_19136 chr10 94967687 94968304 + 0 NA Intergenic Intergenic 19405 ENSMUSG00000089146.1 ENSMUSG00000089146 ENSMUST00000158521 Gm25266 misc_RNA Interval_35439 chr12 21767445 21768973 + 0 NA Intergenic Intergenic 8498 ENSMUSG00000091105.1 ENSMUSG00000091105 ENSMUST00000164169 Mrto4-ps2 processed_pseudogene Interval_49124 chr13 108272326 108273859 + 0 NA intron (ENSMUSG00000021696.9, intron 5 of 7) protein_coding-intron (ENSMUSG00000021696.9, intron 5 of 7) 37658 ENSMUSG00000114607.1 ENSMUSG00000114607 ENSMUST00000225465 Gm8990 processed_pseudogene Interval_44975 chr13 51094479 51095551 + 0 NA Intergenic Intergenic -39304 ENSMUSG00000021395.11 ENSMUSG00000021395 ENSMUST00000223152 Spin1 protein_coding Interval_160216 chr8 107186731 107187618 + 0 NA exon (ENSMUSG00000031924.4, exon 5 of 5) protein_coding-exon (ENSMUSG00000031924.4, exon 5 of 5) 21259 ENSMUSG00000031924.4 ENSMUSG00000031924 ENSMUST00000212920 Cyb5b protein_coding Interval_56928 chr14 123555827 123556145 + 0 NA intron (ENSMUSG00000000197.8, intron 7 of 10) protein_coding-intron (ENSMUSG00000000197.8, intron 7 of 43) 71158 ENSMUSG00000000197.8 ENSMUSG00000000197 ENSMUST00000228766 Nalcn protein_coding Interval_26763 chr11 60306799 60308009 + 0 NA intron (ENSMUSG00000000538.18, intron 1 of 8) protein_coding-intron (ENSMUSG00000000538.18, intron 1 of 12) -4580 ENSMUSG00000098349.1 ENSMUSG00000098349 ENSMUST00000183802 Gm27711 miRNA Interval_53302 chr14 55884321 55885654 + 0 NA promoter-TSS (ENSMUSG00000047153.4) protein_coding-promoter-TSS (ENSMUSG00000047153.4) -30 ENSMUSG00000047153.4 ENSMUSG00000047153 ENSMUST00000228462 Khnyn protein_coding Interval_143192 chr7 4350401 4350657 + 0 NA Intergenic Intergenic -9070 ENSMUSG00000108667.1 ENSMUSG00000108667 ENSMUST00000206883 Gm45013 processed_pseudogene Interval_61182 chr15 79818316 79818564 + 0 NA intron (ENSMUSG00000089837.9, intron 4 of 7) protein_coding-intron (ENSMUSG00000089837.9, intron 4 of 7) -13731 ENSMUSG00000022421.19 ENSMUSG00000022421 ENSMUST00000125283 Nptxr protein_coding Interval_36114 chr12 35995724 35996083 + 0 NA exon (ENSMUSG00000020581.11, exon 3 of 8) protein_coding-exon (ENSMUSG00000020581.11, exon 3 of 8) 2996 ENSMUSG00000020581.11 ENSMUSG00000020581 ENSMUST00000020898 Agr2 protein_coding Interval_150981 chr7 117374641 117374869 + 0 NA Intergenic Intergenic -7107 ENSMUSG00000108693.1 ENSMUSG00000108693 ENSMUST00000205957 Gm45153 TEC Interval_38272 chr12 76837282 76838208 + 0 NA intron (ENSMUSG00000033373.16, intron 1 of 11) protein_coding-intron (ENSMUSG00000033373.16, intron 1 of 11) -14837 ENSMUSG00000021062.15 ENSMUSG00000021062 ENSMUST00000134124 Rab15 protein_coding Interval_160140 chr8 106674162 106675566 + 0 NA Intergenic Intergenic -8251 ENSMUSG00000041949.6 ENSMUSG00000041949 ENSMUST00000211979 Tango6 protein_coding Interval_20642 chr10 119931101 119931436 + 0 NA exon (ENSMUSG00000034813.18, exon 4 of 23) protein_coding-exon (ENSMUSG00000034813.18, exon 4 of 23) -78991 ENSMUSG00000085418.1 ENSMUSG00000085418 ENSMUST00000135940 Grip1os1 antisense Interval_69258 chr16 91735936 91736911 + 0 NA intron (ENSMUSG00000022957.20, intron 1 of 5) protein_coding-intron (ENSMUSG00000022957.20, intron 1 of 28) -7826 ENSMUSG00000058240.14 ENSMUSG00000058240 ENSMUST00000123751 Cryzl1 protein_coding Interval_78436 chr18 12853806 12855433 + 0 NA promoter-TSS (ENSMUSG00000044252.18) protein_coding-promoter-TSS (ENSMUSG00000044252.18) 6586 ENSMUSG00000044252.18 ENSMUSG00000044252 ENSMUST00000142467 Osbpl1a protein_coding Interval_105552 chr3 87657972 87658717 + 0 NA intron (ENSMUSG00000041977.18, intron 1 of 38) protein_coding-intron (ENSMUSG00000041977.18, intron 1 of 39) 39583 ENSMUSG00000041977.18 ENSMUSG00000041977 ENSMUST00000212015 Arhgef11 protein_coding Interval_57513 chr15 12010180 12010809 + 0 NA Intergenic Intergenic -14744 ENSMUSG00000022205.15 ENSMUSG00000022205 ENSMUST00000134414 Sub1 protein_coding Interval_28563 chr11 76743017 76743244 + 0 NA intron (ENSMUSG00000010392.8, intron 6 of 8) protein_coding-intron (ENSMUSG00000010392.8, intron 6 of 8) 20437 ENSMUSG00000010392.8 ENSMUSG00000010392 ENSMUST00000137767 Gosr1 protein_coding Interval_114125 chr4 63744961 63745552 + 0 NA promoter-TSS (ENSMUSG00000050395.9) protein_coding-promoter-TSS (ENSMUSG00000050395.9) -143 ENSMUSG00000050395.9 ENSMUSG00000050395 ENSMUST00000062246 Tnfsf15 protein_coding Interval_73072 chr17 34614085 34614914 + 0 NA TTS (ENSMUSG00000015467.14) protein_coding-TTS (ENSMUSG00000015467.14) 821 ENSMUSG00000015467.14 ENSMUSG00000015467 ENSMUST00000168327 Egfl8 protein_coding Interval_99458 chr2 161362927 161363225 + 0 NA Intergenic Intergenic 31762 ENSMUSG00000087031.1 ENSMUSG00000087031 ENSMUST00000151260 Gm14241 lincRNA Interval_174458 chrX 152708687 152709199 + 0 NA intron (ENSMUSG00000045180.13, intron 1 of 9) protein_coding-intron (ENSMUSG00000045180.13, intron 1 of 9) -35703 ENSMUSG00000045180.13 ENSMUSG00000045180 ENSMUST00000141677 Shroom2 protein_coding Interval_165705 chr9 51168578 51168979 + 0 NA Intergenic Intergenic -3261 ENSMUSG00000110266.1 ENSMUSG00000110266 ENSMUST00000210433 Gm32742 protein_coding Interval_5812 chr1 92092002 92092521 + 0 NA intron (ENSMUSG00000026313.16, intron 1 of 3) protein_coding-intron (ENSMUSG00000026313.16, intron 1 of 25) -70164 ENSMUSG00000102565.1 ENSMUSG00000102565 ENSMUST00000192836 Gm37036 TEC Interval_113928 chr4 59907553 59908404 + 0 NA intron (ENSMUSG00000028386.1, intron 3 of 3) protein_coding-intron (ENSMUSG00000028386.1, intron 3 of 3) 7078 ENSMUSG00000028386.1 ENSMUSG00000028386 ENSMUST00000030081 Slc46a2 protein_coding Interval_108211 chr3 122497484 122499289 + 0 NA intron (ENSMUSG00000028121.8, intron 1 of 2) protein_coding-intron (ENSMUSG00000028121.8, intron 3 of 11) 33659 ENSMUSG00000087743.1 ENSMUSG00000087743 ENSMUST00000157118 Gm25153 snRNA Interval_169230 chr9 95669740 95670445 + 0 NA exon (ENSMUSG00000015354.8, exon 3 of 9) protein_coding-exon (ENSMUSG00000015354.8, exon 3 of 9) 5925 ENSMUSG00000100825.1 ENSMUSG00000100825 ENSMUST00000188629 Itpa-ps2 processed_pseudogene Interval_33285 chr11 115707963 115709344 + 0 NA promoter-TSS (ENSMUSG00000059923.13) protein_coding-promoter-TSS (ENSMUSG00000059923.13) -8725 ENSMUSG00000059923.13 ENSMUSG00000059923 ENSMUST00000135065 Grb2 protein_coding Interval_116915 chr4 118209034 118210480 + 0 NA TTS (ENSMUSG00000033295.14) protein_coding-TTS (ENSMUSG00000033295.14) 807 ENSMUSG00000098596.1 ENSMUSG00000098596 ENSMUST00000184953 Mir7226 miRNA Interval_106534 chr3 97051070 97052146 + 0 NA TTS (ENSMUSG00000057123.14) protein_coding-TTS (ENSMUSG00000057123.14) 41177 ENSMUSG00000104766.1 ENSMUSG00000104766 ENSMUST00000197696 4930573H18Rik antisense Interval_65858 chr16 29844837 29845703 + 0 NA Intergenic Intergenic -10542 ENSMUSG00000116891.1 ENSMUSG00000116891 ENSMUST00000232318 Gm32679 lincRNA Interval_142896 chr6 146775860 146777164 + 0 NA TTS (ENSMUSG00000001630.13) protein_coding-TTS (ENSMUSG00000001630.13) -5957 ENSMUSG00000107788.1 ENSMUSG00000107788 ENSMUST00000203844 Gm6266 processed_pseudogene Interval_69741 chr16 95960642 95963069 + 0 NA Intergenic Intergenic 29035 ENSMUSG00000022913.16 ENSMUSG00000022913 ENSMUST00000233134 Psmg1 protein_coding Interval_41797 chr12 119426717 119427159 + 0 NA intron (ENSMUSG00000041886.7, intron 1 of 4) protein_coding-intron (ENSMUSG00000041886.7, intron 1 of 4) 74420 ENSMUSG00000113192.1 ENSMUSG00000113192 ENSMUST00000222541 Gm18032 processed_pseudogene Interval_168751 chr9 86694990 86696386 + 0 NA exon (ENSMUSG00000032418.15, exon 1 of 14) protein_coding-exon (ENSMUSG00000032418.15, exon 1 of 14) 228 ENSMUSG00000087466.3 ENSMUSG00000087466 ENSMUST00000150367 A330041J22Rik antisense Interval_77562 chr17 91646999 91647969 + 0 NA Intergenic Intergenic -19595 ENSMUSG00000081412.1 ENSMUSG00000081412 ENSMUST00000119343 Gm15403 processed_pseudogene Interval_92877 chr2 67938815 67939580 + 0 NA intron (ENSMUSG00000034780.6, intron 2 of 4) protein_coding-intron (ENSMUSG00000034780.6, intron 2 of 4) 40601 ENSMUSG00000104398.1 ENSMUSG00000104398 ENSMUST00000192459 Gm37964 TEC Interval_27089 chr11 62803446 62804394 + 0 NA Intergenic Intergenic -14499 ENSMUSG00000047342.17 ENSMUSG00000047342 ENSMUST00000149215 Zfp286 protein_coding Interval_137070 chr6 67145002 67147123 + 0 NA intron (ENSMUSG00000097603.3, intron 4 of 5) processed_transcript-intron (ENSMUSG00000097603.3, intron 4 of 5) 30385 ENSMUSG00000097603.3 ENSMUSG00000097603 ENSMUST00000054470 A430010J10Rik processed_transcript Interval_24515 chr11 33931742 33932756 + 0 NA intron (ENSMUSG00000053519.17, intron 1 of 7) protein_coding-intron (ENSMUSG00000053519.17, intron 1 of 3) -30764 ENSMUSG00000020155.2 ENSMUSG00000020155 ENSMUST00000020362 Kcnmb1 protein_coding Interval_52090 chr14 35649264 35650623 + 0 NA Intergenic Intergenic 79990 ENSMUSG00000098696.1 ENSMUSG00000098696 ENSMUST00000184321 Gm27617 misc_RNA Interval_78060 chr18 7599677 7600084 + 0 NA intron (ENSMUSG00000057440.8, intron 3 of 15) protein_coding-intron (ENSMUSG00000057440.8, intron 1 of 16) 18364 ENSMUSG00000094334.2 ENSMUSG00000094334 ENSMUST00000072582 Fabp5l2 processed_pseudogene Interval_96393 chr2 122158434 122158896 + 0 NA intron (ENSMUSG00000027233.4, intron 2 of 17) protein_coding-intron (ENSMUSG00000027233.4, intron 2 of 17) -2137 ENSMUSG00000033368.8 ENSMUSG00000033368 ENSMUST00000143088 Trim69 protein_coding Interval_40145 chr12 101944449 101944817 + 0 NA intron (ENSMUSG00000021189.11, intron 5 of 8) protein_coding-intron (ENSMUSG00000021189.11, intron 5 of 10) 13610 ENSMUSG00000021189.11 ENSMUSG00000021189 ENSMUST00000159883 Atxn3 protein_coding Interval_46113 chr13 61817031 61818251 + 0 NA intron (ENSMUSG00000113626.1, intron 1 of 2) transcribed_processed_pseudogene-intron (ENSMUSG00000113626.1, intron 1 of 1) 6023 ENSMUSG00000080451.1 ENSMUSG00000080451 ENSMUST00000116801 Gm24193 miRNA Interval_153600 chr8 3645564 3646086 + 0 NA Intergenic Intergenic -9945 ENSMUSG00000012705.16 ENSMUSG00000012705 ENSMUST00000012849 Retn protein_coding Interval_26072 chr11 53928655 53929098 + 0 NA TTS (ENSMUSG00000081098.1) unprocessed_pseudogene-TTS (ENSMUSG00000081098.1) 600 ENSMUSG00000081098.1 ENSMUSG00000081098 ENSMUST00000118476 Gm12220 unprocessed_pseudogene Interval_166105 chr9 56663990 56664900 + 0 NA intron (ENSMUSG00000049556.5, intron 3 of 3) protein_coding-intron (ENSMUSG00000049556.5, intron 2 of 3) 57752 ENSMUSG00000097870.2 ENSMUSG00000097870 ENSMUST00000181927 Gm26868 lincRNA Interval_73817 chr17 44078587 44079259 + 0 NA promoter-TSS (ENSMUSG00000023960.13) protein_coding-promoter-TSS (ENSMUSG00000023960.13) 110 ENSMUSG00000023960.13 ENSMUSG00000023960 ENSMUST00000126032 Enpp5 protein_coding Interval_162338 chr8 127257055 127258017 + 0 NA intron (ENSMUSG00000025812.18, intron 1 of 1) protein_coding-intron (ENSMUSG00000025812.18, intron 2 of 23) 86132 ENSMUSG00000025812.18 ENSMUSG00000025812 ENSMUST00000159940 Pard3 protein_coding Interval_111226 chr4 15148459 15149680 + 0 NA promoter-TSS (ENSMUSG00000040536.15) protein_coding-promoter-TSS (ENSMUSG00000040536.15) -108 ENSMUSG00000040536.15 ENSMUSG00000040536 ENSMUST00000141105 Necab1 protein_coding Interval_106138 chr3 93593511 93593993 + 0 NA Intergenic Intergenic 33025 ENSMUSG00000041959.14 ENSMUSG00000041959 ENSMUST00000170612 S100a10 protein_coding Interval_139707 chr6 107740691 107740938 + 0 NA Intergenic Intergenic 113040 ENSMUSG00000107496.1 ENSMUSG00000107496 ENSMUST00000203905 4933431M02Rik lincRNA Interval_153378 chr7 144190395 144190753 + 0 NA intron (ENSMUSG00000037541.22, intron 12 of 17) protein_coding-intron (ENSMUSG00000037541.22, intron 3 of 15) -48151 ENSMUSG00000037541.22 ENSMUSG00000037541 ENSMUST00000136979 Shank2 protein_coding Interval_135746 chr6 46529840 46530087 + 0 NA exon (ENSMUSG00000079575.3, exon 1 of 1) processed_pseudogene-exon (ENSMUSG00000079575.3, exon 1 of 1) 831 ENSMUSG00000079575.3 ENSMUSG00000079575 ENSMUST00000182751 Rbpj-ps3 processed_pseudogene Interval_84188 chr19 8619106 8619316 + 0 NA intron (ENSMUSG00000024650.5, intron 2 of 9) protein_coding-intron (ENSMUSG00000024650.5, intron 2 of 9) 1172 ENSMUSG00000024650.5 ENSMUSG00000024650 ENSMUST00000010250 Slc22a6 protein_coding Interval_18692 chr10 89383217 89383931 + 0 NA Intergenic Intergenic 50268 ENSMUSG00000074802.11 ENSMUSG00000074802 ENSMUST00000219073 Gas2l3 protein_coding Interval_152079 chr7 128867954 128868668 + 0 NA intron (ENSMUSG00000108600.1, intron 2 of 5) lincRNA-intron (ENSMUSG00000108600.1, intron 2 of 5) 41964 ENSMUSG00000080363.1 ENSMUSG00000080363 ENSMUST00000116713 Gm25778 miRNA Interval_2730 chr1 43966743 43967186 + 0 NA intron (ENSMUSG00000041763.14, intron 10 of 23) protein_coding-intron (ENSMUSG00000041763.14, intron 10 of 29) 32950 ENSMUSG00000041763.14 ENSMUSG00000041763 ENSMUST00000187115 Tpp2 protein_coding Interval_136463 chr6 54691362 54691641 + 0 NA intron (ENSMUSG00000038065.13, intron 2 of 2) protein_coding-intron (ENSMUSG00000038065.13, intron 2 of 4) -2145 ENSMUSG00000108283.1 ENSMUSG00000108283 ENSMUST00000204345 Gm44008 TEC Interval_98963 chr2 156362035 156363045 + 0 NA intron (ENSMUSG00000038085.13, intron 9 of 12) protein_coding-intron (ENSMUSG00000038085.13, intron 9 of 12) -14700 ENSMUSG00000082321.3 ENSMUSG00000082321 ENSMUST00000122112 Gm14253 processed_pseudogene Interval_70745 chr17 14116039 14116294 + 0 NA Intergenic Intergenic -9716 ENSMUSG00000099476.1 ENSMUSG00000099476 ENSMUST00000188802 4930488N24Rik unprocessed_pseudogene Interval_112433 chr4 41242106 41242633 + 0 NA intron (ENSMUSG00000028433.14, intron 1 of 7) protein_coding-intron (ENSMUSG00000028433.14, intron 2 of 28) -10248 ENSMUSG00000081866.1 ENSMUSG00000081866 ENSMUST00000118435 Gm12401 processed_pseudogene Interval_47637 chr13 90533671 90533877 + 0 NA Intergenic Intergenic -49555 ENSMUSG00000094277.2 ENSMUSG00000094277 ENSMUST00000179654 Gm21726 processed_pseudogene Interval_111805 chr4 30356347 30356644 + 0 NA Intergenic Intergenic -75617 ENSMUSG00000087180.1 ENSMUSG00000087180 ENSMUST00000152306 Gm11924 lincRNA Interval_116913 chr4 118198465 118199871 + 0 NA Intergenic Intergenic 11396 ENSMUSG00000098596.1 ENSMUSG00000098596 ENSMUST00000184953 Mir7226 miRNA Interval_34818 chr12 12176370 12178098 + 0 NA Intergenic Intergenic 70497 ENSMUSG00000089047.1 ENSMUSG00000089047 ENSMUST00000158422 Gm26171 rRNA Interval_8943 chr1 152565882 152566353 + 0 NA intron (ENSMUSG00000026482.13, intron 5 of 5) protein_coding-intron (ENSMUSG00000026482.13, intron 4 of 17) -13073 ENSMUSG00000026482.13 ENSMUSG00000026482 ENSMUST00000149536 Rgl1 protein_coding Interval_122042 chr5 14493299 14495124 + 0 NA Intergenic Intergenic 45641 ENSMUSG00000097976.1 ENSMUSG00000097976 ENSMUST00000182496 Gm26918 antisense Interval_141053 chr6 124689683 124689975 + 0 NA intron (ENSMUSG00000004270.13, intron 1 of 2) protein_coding-intron (ENSMUSG00000004270.13, intron 1 of 12) -12428 ENSMUSG00000004270.13 ENSMUSG00000004270 ENSMUST00000150597 Lpcat3 protein_coding Interval_119899 chr4 140750241 140750889 + 0 NA intron (ENSMUSG00000025330.6, intron 12 of 15) protein_coding-intron (ENSMUSG00000025330.6, intron 12 of 15) -8918 ENSMUSG00000040935.12 ENSMUSG00000040935 ENSMUST00000130267 Padi6 protein_coding Interval_168926 chr9 89007939 89008676 + 0 NA Intergenic Intergenic 23116 ENSMUSG00000103336.1 ENSMUSG00000103336 ENSMUST00000195301 Gm37993 TEC Interval_34360 chr12 3602878 3603266 + 0 NA intron (ENSMUSG00000071454.13, intron 4 of 17) protein_coding-intron (ENSMUSG00000071454.13, intron 4 of 17) 30602 ENSMUSG00000071454.13 ENSMUSG00000071454 ENSMUST00000174293 Dtnb protein_coding Interval_55897 chr14 101879256 101879456 + 0 NA intron (ENSMUSG00000033060.16, intron 4 of 5) protein_coding-intron (ENSMUSG00000033060.16, intron 6 of 30) 38849 ENSMUSG00000033060.16 ENSMUSG00000033060 ENSMUST00000160038 Lmo7 protein_coding Interval_19964 chr10 111543860 111544106 + 0 NA Intergenic Intergenic 36287 ENSMUSG00000020205.8 ENSMUSG00000020205 ENSMUST00000186359 Phlda1 protein_coding Interval_45452 chr13 55236817 55237107 + 0 NA intron (ENSMUSG00000021488.8, intron 4 of 5) protein_coding-intron (ENSMUSG00000021488.8, intron 3 of 22) 17439 ENSMUSG00000114359.1 ENSMUSG00000114359 ENSMUST00000224833 Gm47816 processed_pseudogene Interval_28751 chr11 78083244 78083624 + 0 NA Intergenic Intergenic -3051 ENSMUSG00000020832.14 ENSMUSG00000020832 ENSMUST00000135154 Eral1 protein_coding Interval_34362 chr12 3609735 3609980 + 0 NA intron (ENSMUSG00000071454.13, intron 4 of 17) protein_coding-intron (ENSMUSG00000071454.13, intron 4 of 17) 37387 ENSMUSG00000071454.13 ENSMUSG00000071454 ENSMUST00000174293 Dtnb protein_coding Interval_117677 chr4 125504458 125505529 + 0 NA TTS (ENSMUSG00000094403.1) miRNA-TTS (ENSMUSG00000094403.1) 244 ENSMUSG00000094403.1 ENSMUSG00000094403 ENSMUST00000102081 Mir692-2 miRNA Interval_144074 chr7 19310035 19310620 + 0 NA promoter-TSS (ENSMUSG00000003545.3) protein_coding-promoter-TSS (ENSMUSG00000003545.3) -281 ENSMUSG00000003545.3 ENSMUSG00000003545 ENSMUST00000208230 Fosb protein_coding Interval_146443 chr7 45934734 45935654 + 0 NA intron (ENSMUSG00000040189.18, intron 2 of 12) protein_coding-intron (ENSMUSG00000040189.18, intron 2 of 12) 1344 ENSMUSG00000109673.1 ENSMUSG00000109673 ENSMUST00000210842 Gm9712 processed_pseudogene Interval_100512 chr2 169769939 169770186 + 0 NA intron (ENSMUSG00000047907.11, intron 1 of 2) protein_coding-intron (ENSMUSG00000047907.11, intron 1 of 1) -114831 ENSMUSG00000047907.11 ENSMUSG00000047907 ENSMUST00000140699 Tshz2 protein_coding Interval_14780 chr10 39777206 39777502 + 0 NA intron (ENSMUSG00000019841.15, intron 2 of 32) protein_coding-intron (ENSMUSG00000019841.15, intron 1 of 31) -24486 ENSMUSG00000081608.1 ENSMUSG00000081608 ENSMUST00000122161 Gm16210 processed_pseudogene Interval_2050 chr1 36106842 36107141 + 0 NA promoter-TSS (ENSMUSG00000104523.1) antisense-promoter-TSS (ENSMUSG00000104523.1) -545 ENSMUSG00000104523.1 ENSMUSG00000104523 ENSMUST00000192656 Gm37335 antisense Interval_135501 chr6 39693829 39694124 + 0 NA intron (ENSMUSG00000002413.15, intron 1 of 17) protein_coding-intron (ENSMUSG00000002413.15, intron 1 of 21) -28897 ENSMUSG00000002413.15 ENSMUSG00000002413 ENSMUST00000169647 Braf protein_coding Interval_114496 chr4 81251884 81253238 + 0 NA Intergenic Intergenic 85843 ENSMUSG00000077607.1 ENSMUSG00000077607 ENSMUST00000104419 Gm25803 snoRNA Interval_152227 chr7 130766300 130767131 + 0 NA promoter-TSS (ENSMUSG00000109104.1) processed_pseudogene-promoter-TSS (ENSMUSG00000109104.1) -238 ENSMUSG00000109104.1 ENSMUSG00000109104 ENSMUST00000208365 Gm6108 processed_pseudogene Interval_171107 chr9 114568687 114569424 + 0 NA Intergenic Intergenic -4686 ENSMUSG00000079259.2 ENSMUSG00000079259 ENSMUST00000111816 Trim71 protein_coding Interval_68015 chr16 63752577 63753752 + 0 NA intron (ENSMUSG00000052504.7, intron 2 of 5) protein_coding-intron (ENSMUSG00000052504.7, intron 3 of 16) -5630 ENSMUSG00000088992.1 ENSMUSG00000088992 ENSMUST00000158367 Gm22769 snRNA Interval_160755 chr8 111962633 111965283 + 0 NA Intergenic Intergenic 22890 ENSMUSG00000031950.7 ENSMUSG00000031950 ENSMUST00000133628 Gabarapl2 protein_coding Interval_142679 chr6 144989272 144989849 + 0 NA Intergenic Intergenic 48628 ENSMUSG00000088867.1 ENSMUSG00000088867 ENSMUST00000158242 Gm23071 rRNA Interval_13758 chr10 21857535 21858885 + 0 NA Intergenic Intergenic -13359 ENSMUSG00000097107.1 ENSMUSG00000097107 ENSMUST00000180731 Platr6 lincRNA Interval_498 chr1 6429513 6429691 + 0 NA TTS (ENSMUSG00000103845.1) processed_pseudogene-TTS (ENSMUSG00000103845.1) 11694 ENSMUSG00000103845.1 ENSMUSG00000103845 ENSMUST00000194240 Gm19026 processed_pseudogene Interval_1421 chr1 22088738 22088964 + 0 NA Intergenic Intergenic -58236 ENSMUSG00000099692.1 ENSMUSG00000099692 ENSMUST00000189850 Gm5696 processed_pseudogene Interval_118609 chr4 132747411 132750145 + 0 NA intron (ENSMUSG00000028885.8, intron 1 of 7) protein_coding-intron (ENSMUSG00000028885.8, intron 1 of 7) 8474 ENSMUSG00000028885.8 ENSMUSG00000028885 ENSMUST00000030709 Smpdl3b protein_coding Interval_61526 chr15 82176644 82178549 + 0 NA intron (ENSMUSG00000022463.8, intron 8 of 20) protein_coding-intron (ENSMUSG00000022463.8, intron 7 of 18) -7920 ENSMUSG00000116226.1 ENSMUSG00000116226 ENSMUST00000229390 Gm49502 TEC Interval_25569 chr11 49824171 49825355 + 0 NA intron (ENSMUSG00000020363.6, intron 13 of 18) protein_coding-intron (ENSMUSG00000020363.6, intron 13 of 18) -21988 ENSMUSG00000020366.18 ENSMUSG00000020366 ENSMUST00000043321 Mapk9 protein_coding Interval_70250 chr17 7238414 7239403 + 0 NA intron (ENSMUSG00000023809.10, intron 2 of 7) protein_coding-intron (ENSMUSG00000023809.10, intron 3 of 20) 68781 ENSMUSG00000023809.10 ENSMUSG00000023809 ENSMUST00000231530 Rps6ka2 protein_coding Interval_13537 chr10 19317920 19318560 + 0 NA intron (ENSMUSG00000110917.1, intron 4 of 4) lincRNA-intron (ENSMUSG00000110917.1, intron 4 of 4) 27251 ENSMUSG00000110917.1 ENSMUSG00000110917 ENSMUST00000213234 Gm33056 lincRNA Interval_145316 chr7 32369774 32370640 + 0 NA Intergenic Intergenic 11279 ENSMUSG00000099394.1 ENSMUSG00000099394 ENSMUST00000187161 Gm9142 processed_pseudogene Interval_131145 chr5 135419073 135419985 + 0 NA intron (ENSMUSG00000039959.13, intron 14 of 18) protein_coding-intron (ENSMUSG00000039959.13, intron 27 of 30) -24983 ENSMUSG00000053293.9 ENSMUSG00000053293 ENSMUST00000111171 Pom121 protein_coding Interval_93869 chr2 77754456 77755213 + 0 NA intron (ENSMUSG00000027016.17, intron 1 of 3) protein_coding-intron (ENSMUSG00000027016.17, intron 1 of 3) -51562 ENSMUSG00000027016.17 ENSMUSG00000027016 ENSMUST00000129077 Zfp385b protein_coding Interval_51956 chr14 34234722 34235723 + 0 NA Intergenic Intergenic -3494 ENSMUSG00000115124.1 ENSMUSG00000115124 ENSMUST00000227403 Gm49201 lincRNA Interval_34461 chr12 4367298 4368273 + 0 NA intron (ENSMUSG00000020647.10, intron 2 of 22) protein_coding-intron (ENSMUSG00000020647.10, intron 2 of 22) 20138 ENSMUSG00000088207.1 ENSMUSG00000088207 ENSMUST00000157582 Gm23756 rRNA Interval_136890 chr6 63110911 63111721 + 0 NA Intergenic Intergenic -48959 ENSMUSG00000107484.1 ENSMUSG00000107484 ENSMUST00000205050 Nasp-ps1 processed_pseudogene Interval_130590 chr5 129065181 129066344 + 0 NA Intergenic Intergenic -30995 ENSMUSG00000044017.16 ENSMUSG00000044017 ENSMUST00000156437 Adgrd1 protein_coding Interval_140659 chr6 120347977 120348922 + 0 NA exon (ENSMUSG00000030177.14, exon 4 of 12) protein_coding-exon (ENSMUSG00000030177.14, exon 4 of 12) 8918 ENSMUSG00000030177.14 ENSMUSG00000030177 ENSMUST00000153435 Ccdc77 protein_coding Interval_171541 chr9 119100874 119101067 + 0 NA Intergenic Intergenic -1508 ENSMUSG00000038060.15 ENSMUSG00000038060 ENSMUST00000148611 Dlec1 protein_coding Interval_155784 chr8 37572197 37572959 + 0 NA intron (ENSMUSG00000039539.13, intron 4 of 9) protein_coding-intron (ENSMUSG00000039539.13, intron 4 of 7) -171558 ENSMUSG00000109820.1 ENSMUSG00000109820 ENSMUST00000210980 Gm45654 processed_pseudogene Interval_135401 chr6 39080706 39081421 + 0 NA exon (ENSMUSG00000029925.13, exon 11 of 13) protein_coding-exon (ENSMUSG00000029925.13, exon 11 of 13) 10030 ENSMUSG00000038507.6 ENSMUSG00000038507 ENSMUST00000129916 Parp12 protein_coding Interval_157644 chr8 71984428 71985138 + 0 NA exon (ENSMUSG00000110529.1, exon 1 of 1) TEC-exon (ENSMUSG00000110529.1, exon 1 of 1) 880 ENSMUSG00000110529.1 ENSMUSG00000110529 ENSMUST00000212022 Gm45694 TEC Interval_74999 chr17 59512884 59513067 + 0 NA Intergenic Intergenic 56690 ENSMUSG00000077562.1 ENSMUSG00000077562 ENSMUST00000104374 Gm23203 snRNA Interval_70956 chr17 16769982 16771202 + 0 NA Intergenic Intergenic -11029 ENSMUSG00000116804.1 ENSMUSG00000116804 ENSMUST00000231738 Gm5223 processed_pseudogene Interval_19932 chr10 111354493 111355338 + 0 NA Intergenic Intergenic 17791 ENSMUSG00000112246.1 ENSMUSG00000112246 ENSMUST00000219123 Gm40761 lincRNA Interval_117227 chr4 120769676 120769894 + 0 NA promoter-TSS (ENSMUSG00000065490.1) miRNA-promoter-TSS (ENSMUSG00000065490.1) -163 ENSMUSG00000065490.1 ENSMUSG00000065490 ENSMUST00000083556 Mir30c-1 miRNA Interval_148870 chr7 89499649 89500366 + 0 NA Intergenic Intergenic -10000 ENSMUSG00000030623.4 ENSMUSG00000030623 ENSMUST00000208814 Prss23os antisense Interval_72572 chr17 30734946 30735715 + 0 NA intron (ENSMUSG00000033826.10, intron 40 of 90) protein_coding-intron (ENSMUSG00000033826.10, intron 42 of 92) 46799 ENSMUSG00000094785.1 ENSMUSG00000094785 ENSMUST00000083205 Gm24661 snRNA Interval_124668 chr5 53023393 53024564 + 0 NA Intergenic Intergenic -14103 ENSMUSG00000029188.14 ENSMUSG00000029188 ENSMUST00000147243 Slc34a2 protein_coding Interval_23758 chr11 25949160 25949682 + 0 NA intron (ENSMUSG00000032985.15, intron 2 of 2) protein_coding-intron (ENSMUSG00000032985.15, intron 2 of 6) -180280 ENSMUSG00000032985.15 ENSMUSG00000032985 ENSMUST00000125987 5730522E02Rik protein_coding Interval_84976 chr19 20853508 20854372 + 0 NA intron (ENSMUSG00000024749.9, intron 9 of 20) protein_coding-intron (ENSMUSG00000024749.9, intron 9 of 20) -39273 ENSMUSG00000024749.9 ENSMUSG00000024749 ENSMUST00000235546 Tmc1 protein_coding Interval_61388 chr15 81279866 81280072 + 0 NA intron (ENSMUSG00000115970.1, intron 1 of 3) lincRNA-intron (ENSMUSG00000115970.1, intron 1 of 3) -28107 ENSMUSG00000115970.1 ENSMUSG00000115970 ENSMUST00000230042 8430426J06Rik lincRNA Interval_30833 chr11 96771802 96772010 + 0 NA promoter-TSS (ENSMUSG00000020876.14) protein_coding-promoter-TSS (ENSMUSG00000020876.14) 5104 ENSMUSG00000085242.1 ENSMUSG00000085242 ENSMUST00000124865 Gm11537 antisense Interval_170121 chr9 105022714 105023205 + 0 NA TTS (ENSMUSG00000032564.16) protein_coding-TTS (ENSMUSG00000032564.16) 28043 ENSMUSG00000088204.1 ENSMUSG00000088204 ENSMUST00000157579 Gm23391 miRNA Interval_106133 chr3 93522371 93523058 + 0 NA intron (ENSMUSG00000027907.4, intron 1 of 2) protein_coding-intron (ENSMUSG00000027907.4, intron 1 of 2) 2226 ENSMUSG00000027907.4 ENSMUSG00000027907 ENSMUST00000029515 S100a11 protein_coding Interval_84106 chr19 7245376 7246581 + 0 NA promoter-TSS (ENSMUSG00000096774.1) snRNA-promoter-TSS (ENSMUSG00000096774.1) -731 ENSMUSG00000096774.1 ENSMUSG00000096774 ENSMUST00000158343 Gm22113 snRNA Interval_43414 chr13 30363389 30364792 + 0 NA intron (ENSMUSG00000049115.15, intron 1 of 1) protein_coding-intron (ENSMUSG00000049115.15, intron 2 of 2) -6269 ENSMUSG00000113424.1 ENSMUSG00000113424 ENSMUST00000222575 Gm48161 sense_intronic Interval_111951 chr4 32770415 32770961 + 0 NA intron (ENSMUSG00000058006.12, intron 98 of 101) protein_coding-intron (ENSMUSG00000058006.12, intron 98 of 101) -29591 ENSMUSG00000045854.4 ENSMUSG00000045854 ENSMUST00000130321 Lyrm2 protein_coding Interval_32156 chr11 105711356 105712345 + 0 NA intron (ENSMUSG00000053580.16, intron 1 of 3) protein_coding-intron (ENSMUSG00000053580.16, intron 3 of 25) 38428 ENSMUSG00000053580.16 ENSMUSG00000053580 ENSMUST00000147975 Tanc2 protein_coding Interval_33409 chr11 116411479 116413625 + 0 NA intron (ENSMUSG00000052949.14, intron 1 of 1) protein_coding-intron (ENSMUSG00000052949.14, intron 1 of 18) -21957 ENSMUSG00000050628.6 ENSMUSG00000050628 ENSMUST00000144310 Ubald2 protein_coding Interval_5013 chr1 84205038 84207349 + 0 NA intron (ENSMUSG00000045658.16, intron 2 of 4) protein_coding-intron (ENSMUSG00000045658.16, intron 1 of 2) 12768 ENSMUSG00000098851.1 ENSMUSG00000098851 ENSMUST00000183596 Mir6353 miRNA Interval_9621 chr1 160351392 160352792 + 0 NA promoter-TSS (ENSMUSG00000026721.16) protein_coding-promoter-TSS (ENSMUSG00000026721.16) -25014 ENSMUSG00000103693.1 ENSMUSG00000103693 ENSMUST00000195618 Gm37529 sense_intronic Interval_15377 chr10 45184761 45185017 + 0 NA intron (ENSMUSG00000019848.14, intron 1 of 2) protein_coding-intron (ENSMUSG00000019848.14, intron 1 of 2) 6791 ENSMUSG00000019848.14 ENSMUSG00000019848 ENSMUST00000161803 Popdc3 protein_coding Interval_102821 chr3 31469879 31470516 + 0 NA Intergenic Intergenic 129185 ENSMUSG00000103998.1 ENSMUSG00000103998 ENSMUST00000193926 Gm38025 lincRNA Interval_42077 chr13 8071290 8071713 + 0 NA Intergenic Intergenic -40148 ENSMUSG00000113508.1 ENSMUSG00000113508 ENSMUST00000222219 Gm9742 transcribed_processed_pseudogene Interval_139899 chr6 112516408 112517004 + 0 NA Intergenic Intergenic 3259 ENSMUSG00000099205.1 ENSMUSG00000099205 ENSMUST00000185155 Gm27944 snRNA Interval_95283 chr2 105649164 105649376 + 0 NA intron (ENSMUSG00000086029.7, intron 1 of 3) antisense-intron (ENSMUSG00000086029.7, intron 1 of 3) 12073 ENSMUSG00000102424.2 ENSMUSG00000102424 ENSMUST00000194826 Paupar lincRNA Interval_60186 chr15 67098908 67099288 + 0 NA Intergenic Intergenic 29925 ENSMUSG00000013846.10 ENSMUSG00000013846 ENSMUST00000230150 St3gal1 protein_coding Interval_89081 chr2 15914925 15915375 + 0 NA intron (ENSMUSG00000075520.5, intron 25 of 38) protein_coding-intron (ENSMUSG00000075520.5, intron 25 of 38) -41775 ENSMUSG00000081245.2 ENSMUSG00000081245 ENSMUST00000120219 Gm6587 processed_pseudogene Interval_158651 chr8 84965595 84966960 + 0 NA promoter-TSS (ENSMUSG00000052926.16) protein_coding-promoter-TSS (ENSMUSG00000052926.16) 3156 ENSMUSG00000111184.1 ENSMUSG00000111184 ENSMUST00000214133 Gm49661 protein_coding Interval_44219 chr13 42329194 42329423 + 0 NA Intergenic Intergenic -24317 ENSMUSG00000113619.1 ENSMUSG00000113619 ENSMUST00000221433 Gm47118 antisense Interval_57669 chr15 14606724 14607509 + 0 NA Intergenic Intergenic 128168 ENSMUSG00000092919.2 ENSMUSG00000092919 ENSMUST00000175178 Gm24080 miRNA Interval_63476 chr15 101315349 101316438 + 0 NA promoter-TSS (ENSMUSG00000116395.1) TEC-promoter-TSS (ENSMUSG00000116395.1) -209 ENSMUSG00000116395.1 ENSMUSG00000116395 ENSMUST00000229927 Gm49499 TEC Interval_94174 chr2 84855629 84856195 + 0 NA intron (ENSMUSG00000027075.16, intron 8 of 12) protein_coding-intron (ENSMUSG00000027075.16, intron 8 of 14) 16517 ENSMUSG00000027075.16 ENSMUSG00000027075 ENSMUST00000111625 Slc43a1 protein_coding Interval_22684 chr11 12985441 12985716 + 0 NA Intergenic Intergenic -12088 ENSMUSG00000084055.1 ENSMUSG00000084055 ENSMUST00000117869 Gm12004 processed_pseudogene Interval_132846 chr5 148279666 148279918 + 0 NA intron (ENSMUSG00000029651.16, intron 2 of 8) protein_coding-intron (ENSMUSG00000029651.16, intron 2 of 6) 43800 ENSMUSG00000029651.16 ENSMUSG00000029651 ENSMUST00000085554 Mtus2 protein_coding Interval_18015 chr10 81370895 81372046 + 0 NA promoter-TSS (ENSMUSG00000020235.16) protein_coding-promoter-TSS (ENSMUSG00000020235.16) -1929 ENSMUSG00000020235.16 ENSMUSG00000020235 ENSMUST00000127203 Fzr1 protein_coding Interval_1407 chr1 21393202 21393926 + 0 NA Intergenic Intergenic 2658 ENSMUSG00000085679.2 ENSMUSG00000085679 ENSMUST00000126985 Gm16328 processed_pseudogene Interval_124328 chr5 44022140 44022387 + 0 NA intron (ENSMUSG00000029086.15, intron 2 of 8) protein_coding-intron (ENSMUSG00000029086.15, intron 10 of 21) 15402 ENSMUSG00000029086.15 ENSMUSG00000029086 ENSMUST00000198218 Prom1 protein_coding Interval_60002 chr15 63659119 63659365 + 0 NA intron (ENSMUSG00000115520.2, intron 2 of 8) lincRNA-intron (ENSMUSG00000115520.2, intron 2 of 8) 27545 ENSMUSG00000095812.1 ENSMUSG00000095812 ENSMUST00000179326 Gm5473 processed_pseudogene Interval_132868 chr5 148402622 148402929 + 0 NA Intergenic Intergenic -2984 ENSMUSG00000041313.14 ENSMUSG00000041313 ENSMUST00000201348 Slc7a1 protein_coding Interval_24273 chr11 31999550 32000725 + 0 NA promoter-TSS (ENSMUSG00000020297.10) protein_coding-promoter-TSS (ENSMUSG00000020297.10) -326 ENSMUSG00000020297.10 ENSMUSG00000020297 ENSMUST00000093219 Nsg2 protein_coding Interval_161436 chr8 120455279 120457127 + 0 NA intron (ENSMUSG00000031822.20, intron 2 of 2) protein_coding-intron (ENSMUSG00000092329.1, intron 1 of 15) -12654 ENSMUSG00000080549.2 ENSMUSG00000080549 ENSMUST00000116899 Gm22715 miRNA Interval_61959 chr15 85506133 85506627 + 0 NA Intergenic Intergenic -3153 ENSMUSG00000096607.1 ENSMUSG00000096607 ENSMUST00000178942 7530416G11Rik protein_coding Interval_61846 chr15 84621777 84622571 + 0 NA Intergenic Intergenic -45057 ENSMUSG00000116409.1 ENSMUSG00000116409 ENSMUST00000229199 Gm34095 lincRNA Interval_23156 chr11 20216272 20217026 + 0 NA intron (ENSMUSG00000020149.17, intron 2 of 3) protein_coding-intron (ENSMUSG00000020149.17, intron 2 of 5) 15047 ENSMUSG00000020149.17 ENSMUSG00000020149 ENSMUST00000152728 Rab1a protein_coding Interval_90371 chr2 30048296 30049706 + 0 NA promoter-TSS (ENSMUSG00000039715.8) protein_coding-promoter-TSS (ENSMUSG00000039715.8) -140 ENSMUSG00000039715.8 ENSMUSG00000039715 ENSMUST00000146275 Wdr34 protein_coding Interval_166463 chr9 59690472 59692684 + 0 NA intron (ENSMUSG00000074259.10, intron 1 of 8) protein_coding-intron (ENSMUSG00000074259.10, intron 1 of 8) 18764 ENSMUSG00000111394.1 ENSMUSG00000111394 ENSMUST00000214037 Gm49759 TEC Interval_168142 chr9 77485746 77486572 + 0 NA intron (ENSMUSG00000032352.16, intron 1 of 1) protein_coding-intron (ENSMUSG00000032352.16, intron 2 of 13) 58689 ENSMUSG00000032352.16 ENSMUSG00000032352 ENSMUST00000183980 Lrrc1 protein_coding Interval_112745 chr4 44564179 44565549 + 0 NA intron (ENSMUSG00000014030.15, intron 6 of 7) protein_coding-intron (ENSMUSG00000014030.15, intron 6 of 7) 42704 ENSMUSG00000092761.1 ENSMUSG00000092761 ENSMUST00000175020 Mir5120 miRNA Interval_89600 chr2 23147800 23148095 + 0 NA intron (ENSMUSG00000026779.6, intron 2 of 6) protein_coding-intron (ENSMUSG00000026779.6, intron 2 of 11) 7950 ENSMUSG00000026779.6 ENSMUSG00000026779 ENSMUST00000136207 Mastl protein_coding Interval_40493 chr12 105222158 105223362 + 0 NA promoter-TSS (ENSMUSG00000041359.14) protein_coding-promoter-TSS (ENSMUSG00000041359.14) -64 ENSMUSG00000041359.14 ENSMUSG00000041359 ENSMUST00000176952 Tcl1 protein_coding Interval_53283 chr14 55767448 55768579 + 0 NA exon (ENSMUSG00000046908.5, exon 2 of 2) protein_coding-exon (ENSMUSG00000046908.5, exon 2 of 2) 2051 ENSMUSG00000046908.5 ENSMUSG00000046908 ENSMUST00000057569 Ltb4r1 protein_coding Interval_68224 chr16 69567786 69569194 + 0 NA Intergenic Intergenic 231891 ENSMUSG00000107073.1 ENSMUSG00000107073 ENSMUST00000201886 4930428D20Rik lincRNA Interval_18574 chr10 88060595 88061677 + 0 NA Intergenic Intergenic 22911 ENSMUSG00000112235.1 ENSMUSG00000112235 ENSMUST00000218037 Gm48307 TEC Interval_39299 chr12 86522174 86522402 + 0 NA TTS (ENSMUSG00000021255.17) protein_coding-TTS (ENSMUSG00000021255.17) 52171 ENSMUSG00000021255.17 ENSMUSG00000021255 ENSMUST00000136464 Esrrb protein_coding Interval_3721 chr1 62000783 62001198 + 0 NA intron (ENSMUSG00000052062.14, intron 2 of 9) protein_coding-intron (ENSMUSG00000052062.14, intron 2 of 21) -19783 ENSMUSG00000100344.1 ENSMUSG00000100344 ENSMUST00000187972 Gm29640 processed_pseudogene Interval_173062 chrX 69359386 69361553 + 0 NA promoter-TSS (ENSMUSG00000031189.12) protein_coding-promoter-TSS (ENSMUSG00000031189.12) -128 ENSMUSG00000086676.2 ENSMUSG00000086676 ENSMUST00000187253 Gm14705 antisense Interval_85800 chr19 31762546 31765290 + 0 NA intron (ENSMUSG00000052920.16, intron 1 of 2) protein_coding-intron (ENSMUSG00000052920.16, intron 1 of 17) -104863 ENSMUSG00000052595.8 ENSMUSG00000052595 ENSMUST00000225165 A1cf protein_coding Interval_62220 chr15 88913623 88914827 + 0 NA exon (ENSMUSG00000022388.14, exon 12 of 12) protein_coding-exon (ENSMUSG00000022388.14, exon 12 of 12) -22700 ENSMUSG00000093394.1 ENSMUSG00000093394 ENSMUST00000176338 Gm20621 sense_overlapping Interval_168906 chr9 88505865 88506184 + 0 NA intron (ENSMUSG00000097195.10, intron 4 of 5) processed_transcript-intron (ENSMUSG00000097195.10, intron 4 of 5) 15576 ENSMUSG00000094263.1 ENSMUSG00000094263 ENSMUST00000178154 Snord50a snoRNA Interval_137830 chr6 82808402 82808714 + 0 NA Intergenic Intergenic -3475 ENSMUSG00000109556.1 ENSMUSG00000109556 ENSMUST00000209189 Gm38843 lincRNA Interval_119046 chr4 135214686 135216261 + 0 NA exon (ENSMUSG00000037242.8, exon 6 of 6) protein_coding-exon (ENSMUSG00000037242.8, exon 6 of 6) 57341 ENSMUSG00000037242.8 ENSMUSG00000037242 ENSMUST00000143370 Clic4 protein_coding Interval_130322 chr5 125707937 125708317 + 0 NA intron (ENSMUSG00000070498.3, intron 4 of 8) protein_coding-intron (ENSMUSG00000070498.3, intron 4 of 8) 140613 ENSMUSG00000091970.3 ENSMUSG00000091970 ENSMUST00000164138 Gm4868 processed_pseudogene Interval_8677 chr1 147199410 147200364 + 0 NA Intergenic Intergenic 82055 ENSMUSG00000102134.1 ENSMUSG00000102134 ENSMUST00000193584 Gm9931 TEC Interval_27659 chr11 69346126 69346985 + 0 NA promoter-TSS (ENSMUSG00000018474.18) protein_coding-promoter-TSS (ENSMUSG00000018474.18) 2161 ENSMUSG00000018474.18 ENSMUSG00000018474 ENSMUST00000144701 Chd3 protein_coding Interval_50897 chr14 20626698 20627652 + 0 NA intron (ENSMUSG00000034235.17, intron 1 of 20) protein_coding-intron (ENSMUSG00000034235.17, intron 1 of 20) -13834 ENSMUSG00000099966.1 ENSMUSG00000099966 ENSMUST00000190699 2810402E24Rik antisense Interval_27131 chr11 63193489 63193754 + 0 NA Intergenic Intergenic 19707 ENSMUSG00000085532.1 ENSMUSG00000085532 ENSMUST00000123420 B430319H21Rik lincRNA Interval_54291 chr14 67211480 67212357 + 0 NA Intergenic Intergenic 21211 ENSMUSG00000093744.1 ENSMUSG00000093744 ENSMUST00000175861 Gm20675 lincRNA Interval_174341 chrX 145504708 145506162 + 0 NA promoter-TSS (ENSMUSG00000041688.16) protein_coding-promoter-TSS (ENSMUSG00000041688.16) -254 ENSMUSG00000041688.16 ENSMUSG00000041688 ENSMUST00000143610 Amot protein_coding Interval_4617 chr1 75466985 75468047 + 0 NA intron (ENSMUSG00000033007.15, intron 1 of 8) protein_coding-intron (ENSMUSG00000033007.15, intron 1 of 9) 3245 ENSMUSG00000102605.1 ENSMUSG00000102605 ENSMUST00000194916 Gm37264 TEC Interval_57922 chr15 25440894 25442251 + 0 NA intron (ENSMUSG00000115729.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000115850.1, intron 1 of 1) 4068 ENSMUSG00000115850.1 ENSMUSG00000115850 ENSMUST00000226289 Gm48956 lincRNA Interval_32034 chr11 104589963 104590836 + 0 NA intron (ENSMUSG00000061086.12, intron 2 of 2) protein_coding-intron (ENSMUSG00000061086.12, intron 2 of 2) 8360 ENSMUSG00000061086.12 ENSMUSG00000061086 ENSMUST00000136244 Myl4 protein_coding Interval_139350 chr6 99240560 99241560 + 0 NA intron (ENSMUSG00000030067.17, intron 2 of 3) protein_coding-intron (ENSMUSG00000030067.17, intron 2 of 3) 147439 ENSMUSG00000093559.1 ENSMUSG00000093559 ENSMUST00000177278 Gm20705 sense_intronic Interval_122034 chr5 14339885 14340190 + 0 NA Intergenic Intergenic 97575 ENSMUSG00000106310.1 ENSMUSG00000106310 ENSMUST00000197397 Gm43523 TEC Interval_48210 chr13 97206933 97208530 + 0 NA Intergenic Intergenic -4756 ENSMUSG00000114583.1 ENSMUSG00000114583 ENSMUST00000225592 Gm48881 processed_pseudogene Interval_22610 chr11 12269588 12269842 + 0 NA intron (ENSMUSG00000020173.17, intron 4 of 4) protein_coding-intron (ENSMUSG00000020173.17, intron 9 of 14) -52560 ENSMUSG00000086584.8 ENSMUSG00000086584 ENSMUST00000174550 Gm12002 antisense Interval_91843 chr2 50187093 50187307 + 0 NA intron (ENSMUSG00000050447.15, intron 3 of 4) protein_coding-intron (ENSMUSG00000050447.15, intron 4 of 5) 58831 ENSMUSG00000050447.15 ENSMUSG00000050447 ENSMUST00000126337 Lypd6 protein_coding Interval_117113 chr4 119638563 119638944 + 0 NA exon (ENSMUSG00000023247.2, exon 2 of 3) protein_coding-exon (ENSMUSG00000023247.2, exon 2 of 3) 1049 ENSMUSG00000023247.2 ENSMUSG00000023247 ENSMUST00000024015 Guca2a protein_coding Interval_10947 chr1 177447462 177448996 + 0 NA exon (ENSMUSG00000063659.11, exon 3 of 3) protein_coding-exon (ENSMUSG00000063659.11, exon 3 of 3) 3291 ENSMUSG00000063659.11 ENSMUSG00000063659 ENSMUST00000077225 Zbtb18 protein_coding Interval_156825 chr8 60889892 60891030 + 0 NA promoter-TSS (ENSMUSG00000038005.15) protein_coding-promoter-TSS (ENSMUSG00000038005.15) -15570 ENSMUSG00000038005.15 ENSMUSG00000038005 ENSMUST00000211016 Hpf1 protein_coding Interval_70970 chr17 16933693 16934266 + 0 NA Intergenic Intergenic -17573 ENSMUSG00000060149.7 ENSMUSG00000060149 ENSMUST00000071374 BC002059 lincRNA Interval_12014 chr1 188853344 188855268 + 0 NA intron (ENSMUSG00000026609.15, intron 57 of 70) protein_coding-intron (ENSMUSG00000026609.15, intron 57 of 70) 93830 ENSMUSG00000084550.1 ENSMUSG00000084550 ENSMUST00000122601 Gm25269 snRNA Interval_77688 chr17 94295382 94295565 + 0 NA Intergenic Intergenic 33390 ENSMUSG00000077433.1 ENSMUSG00000077433 ENSMUST00000104245 Gm22593 snRNA Interval_76454 chr17 80289570 80290542 + 0 NA promoter-TSS (ENSMUSG00000045257.10) protein_coding-promoter-TSS (ENSMUSG00000045257.10) -147 ENSMUSG00000045257.10 ENSMUSG00000045257 ENSMUST00000061703 Morn2 protein_coding Interval_168208 chr9 77967037 77967252 + 0 NA intron (ENSMUSG00000032349.13, intron 3 of 5) protein_coding-intron (ENSMUSG00000032349.13, intron 3 of 7) -25455 ENSMUSG00000111610.1 ENSMUSG00000111610 ENSMUST00000216017 Gm34829 lincRNA Interval_119078 chr4 135390469 135391336 + 0 NA intron (ENSMUSG00000043924.16, intron 1 of 3) protein_coding-intron (ENSMUSG00000043924.16, intron 1 of 4) 7325 ENSMUSG00000043924.16 ENSMUSG00000043924 ENSMUST00000154518 Ncmap protein_coding Interval_130247 chr5 125183907 125185531 + 0 NA Intergenic Intergenic 88096 ENSMUSG00000105039.1 ENSMUSG00000105039 ENSMUST00000198586 Gm32585 lincRNA Interval_92650 chr2 61990568 61991063 + 0 NA Intergenic Intergenic -20143 ENSMUSG00000083018.1 ENSMUSG00000083018 ENSMUST00000121668 Gm13555 processed_pseudogene Interval_9075 chr1 153445710 153446938 + 0 NA intron (ENSMUSG00000042708.12, intron 1 of 1) protein_coding-intron (ENSMUSG00000042708.12, intron 7 of 9) 961 ENSMUSG00000042708.12 ENSMUSG00000042708 ENSMUST00000137861 Shcbp1l protein_coding Interval_99000 chr2 156547284 156548212 + 0 NA exon (ENSMUSG00000027628.10, exon 1 of 4) protein_coding-exon (ENSMUSG00000027628.10, exon 1 of 4) 138 ENSMUSG00000027628.10 ENSMUSG00000027628 ENSMUST00000126250 Aar2 protein_coding Interval_98757 chr2 154755926 154756475 + 0 NA Intergenic Intergenic 13830 ENSMUSG00000098640.1 ENSMUSG00000098640 ENSMUST00000185009 Gm14214 protein_coding Interval_58852 chr15 39196739 39199450 + 0 NA promoter-TSS (ENSMUSG00000037386.16) protein_coding-promoter-TSS (ENSMUSG00000037386.16) 17583 ENSMUSG00000098021.2 ENSMUSG00000098021 ENSMUST00000182394 Gm9522 processed_pseudogene Interval_111724 chr4 26781540 26781858 + 0 NA Intergenic Intergenic -76250 ENSMUSG00000086257.1 ENSMUSG00000086257 ENSMUST00000154459 4930548K13Rik lincRNA Interval_30552 chr11 95075987 95077289 + 0 NA promoter-TSS (ENSMUSG00000001507.16) protein_coding-promoter-TSS (ENSMUSG00000001507.16) 159 ENSMUSG00000001507.16 ENSMUSG00000001507 ENSMUST00000145671 Itga3 protein_coding Interval_77225 chr17 87458977 87459941 + 0 NA promoter-TSS (ENSMUSG00000117545.1) lincRNA-promoter-TSS (ENSMUSG00000117545.1) 905 ENSMUSG00000117545.1 ENSMUSG00000117545 ENSMUST00000234358 Gm30794 lincRNA Interval_160662 chr8 111435457 111435880 + 0 NA Intergenic Intergenic -14532 ENSMUSG00000098410.1 ENSMUSG00000098410 ENSMUST00000184608 Mir1957b miRNA Interval_45420 chr13 55071162 55071774 + 0 NA intron (ENSMUSG00000025878.16, intron 4 of 12) protein_coding-intron (ENSMUSG00000025878.16, intron 6 of 14) -14309 ENSMUSG00000094446.1 ENSMUSG00000094446 ENSMUST00000075962 Gm6344 processed_pseudogene Interval_69938 chr17 3325774 3327209 + 0 NA promoter-TSS (ENSMUSG00000023800.15) protein_coding-promoter-TSS (ENSMUSG00000023800.15) -12306 ENSMUSG00000116838.1 ENSMUSG00000116838 ENSMUST00000231500 Gm6475 processed_pseudogene Interval_15603 chr10 52261884 52262093 + 0 NA intron (ENSMUSG00000019891.15, intron 2 of 2) protein_coding-intron (ENSMUSG00000019891.15, intron 2 of 10) 28351 ENSMUSG00000019891.15 ENSMUSG00000019891 ENSMUST00000218582 Dcbld1 protein_coding Interval_51981 chr14 34402883 34403169 + 0 NA exon (ENSMUSG00000041445.9, exon 7 of 7) protein_coding-exon (ENSMUSG00000041445.9, exon 7 of 7) 27305 ENSMUSG00000041445.9 ENSMUSG00000041445 ENSMUST00000227130 Mmrn2 protein_coding Interval_159203 chr8 91635201 91636006 + 0 NA TTS (ENSMUSG00000110325.1) TEC-TTS (ENSMUSG00000110325.1) 2524 ENSMUSG00000110325.1 ENSMUSG00000110325 ENSMUST00000209754 Gm45293 TEC Interval_98312 chr2 150946455 150946692 + 0 NA intron (ENSMUSG00000084264.1, intron 1 of 1) protein_coding-intron (ENSMUSG00000068115.13, intron 17 of 23) 236 ENSMUSG00000084264.1 ENSMUSG00000084264 ENSMUST00000117833 Gm14142 processed_pseudogene Interval_97159 chr2 131847389 131848309 + 0 NA promoter-TSS (ENSMUSG00000086822.2) lincRNA-promoter-TSS (ENSMUSG00000086822.2) -166 ENSMUSG00000086822.2 ENSMUSG00000086822 ENSMUST00000140443 5330413P13Rik lincRNA Interval_106924 chr3 101963630 101964042 + 0 NA Intergenic Intergenic -39387 ENSMUSG00000033147.16 ENSMUSG00000033147 ENSMUST00000182040 Slc22a15 protein_coding Interval_148296 chr7 80347646 80348904 + 0 NA promoter-TSS (ENSMUSG00000030533.16) protein_coding-promoter-TSS (ENSMUSG00000030533.16) 4709 ENSMUSG00000030532.6 ENSMUSG00000030532 ENSMUST00000206089 Hddc3 protein_coding Interval_170944 chr9 112812111 112812363 + 0 NA Intergenic Intergenic 289708 ENSMUSG00000096353.1 ENSMUSG00000096353 ENSMUST00000179604 Gm24957 snoRNA Interval_46018 chr13 60162296 60163402 + 0 NA Intergenic Intergenic -13833 ENSMUSG00000114433.1 ENSMUSG00000114433 ENSMUST00000224630 Gm48488 lincRNA Interval_61368 chr15 81137162 81138548 + 0 NA intron (ENSMUSG00000042292.18, intron 1 of 13) protein_coding-intron (ENSMUSG00000042292.18, intron 1 of 3) -22010 ENSMUSG00000116321.1 ENSMUSG00000116321 ENSMUST00000230595 Gm49522 TEC Interval_154615 chr8 22077952 22078257 + 0 NA intron (ENSMUSG00000037738.11, intron 18 of 18) protein_coding-intron (ENSMUSG00000037738.11, intron 19 of 19) 9088 ENSMUSG00000063362.13 ENSMUSG00000063362 ENSMUST00000134474 Alg11 protein_coding Interval_122227 chr5 20416996 20417932 + 0 NA intron (ENSMUSG00000040003.18, intron 5 of 15) protein_coding-intron (ENSMUSG00000040003.18, intron 9 of 22) 153123 ENSMUSG00000087768.1 ENSMUSG00000087768 ENSMUST00000157143 Gm22755 snRNA Interval_146214 chr7 44733523 44734246 + 0 NA TTS (ENSMUSG00000048012.19) protein_coding-TTS (ENSMUSG00000048012.19) 10346 ENSMUSG00000048012.19 ENSMUSG00000048012 ENSMUST00000126366 Zfp473 protein_coding Interval_163846 chr9 27114978 27115287 + 0 NA intron (ENSMUSG00000031990.15, intron 1 of 2) protein_coding-intron (ENSMUSG00000031990.15, intron 1 of 8) 11418 ENSMUSG00000031990.15 ENSMUSG00000031990 ENSMUST00000213682 Jam3 protein_coding Interval_64807 chr16 16035952 16036992 + 0 NA intron (ENSMUSG00000041974.10, intron 8 of 16) protein_coding-intron (ENSMUSG00000041974.10, intron 8 of 19) -25463 ENSMUSG00000077350.1 ENSMUSG00000077350 ENSMUST00000104162 n-R5s31 rRNA Interval_153167 chr7 142016332 142016983 + 0 NA intron (ENSMUSG00000025147.7, intron 1 of 4) protein_coding-intron (ENSMUSG00000025147.7, intron 1 of 4) 9294 ENSMUSG00000025147.7 ENSMUSG00000025147 ENSMUST00000211505 Mob2 protein_coding Interval_170626 chr9 109650698 109651067 + 0 NA intron (ENSMUSG00000094992.1, intron 7 of 9) protein_coding-intron (ENSMUSG00000094992.1, intron 7 of 9) 13770 ENSMUSG00000094992.1 ENSMUSG00000094992 ENSMUST00000163839 Fbxw25 protein_coding Interval_72073 chr17 27849385 27849654 + 0 NA exon (ENSMUSG00000024217.10, exon 4 of 4) protein_coding-exon (ENSMUSG00000024217.10, exon 4 of 4) -7087 ENSMUSG00000039512.12 ENSMUSG00000039512 ENSMUST00000233409 Uhrf1bp1 protein_coding Interval_10169 chr1 166308526 166310089 + 0 NA exon (ENSMUSG00000040612.13, exon 9 of 10) protein_coding-exon (ENSMUSG00000040612.13, exon 9 of 10) 278 ENSMUSG00000091393.1 ENSMUSG00000091393 ENSMUST00000168347 5330438I03Rik antisense Interval_150533 chr7 112130579 112130790 + 0 NA intron (ENSMUSG00000030772.6, intron 4 of 7) protein_coding-intron (ENSMUSG00000030772.6, intron 4 of 7) 28373 ENSMUSG00000030772.6 ENSMUSG00000030772 ENSMUST00000033036 Dkk3 protein_coding Interval_18547 chr10 87444089 87444389 + 0 NA Intergenic Intergenic 49421 ENSMUSG00000020052.9 ENSMUSG00000020052 ENSMUST00000020243 Ascl1 protein_coding Interval_58407 chr15 34244987 34246460 + 0 NA intron (ENSMUSG00000022257.4, intron 1 of 5) protein_coding-intron (ENSMUSG00000022257.4, intron 1 of 6) 24106 ENSMUSG00000115808.1 ENSMUSG00000115808 ENSMUST00000226939 Gm18949 processed_pseudogene Interval_57925 chr15 25479858 25481152 + 0 NA Intergenic Intergenic -34865 ENSMUSG00000115850.1 ENSMUSG00000115850 ENSMUST00000226289 Gm48956 lincRNA Interval_70595 chr17 12205056 12206176 + 0 NA intron (ENSMUSG00000023827.8, intron 3 of 3) protein_coding-intron (ENSMUSG00000023827.8, intron 3 of 8) 15695 ENSMUSG00000063911.4 ENSMUSG00000063911 ENSMUST00000074412 Tdgf1-ps2 processed_pseudogene Interval_62204 chr15 88794815 88795639 + 0 NA Intergenic Intergenic 24091 ENSMUSG00000035845.17 ENSMUSG00000035845 ENSMUST00000159328 Alg12 protein_coding Interval_147451 chr7 67372001 67373801 + 0 NA promoter-TSS (ENSMUSG00000030557.17) protein_coding-promoter-TSS (ENSMUSG00000030557.17) -1921 ENSMUSG00000109363.1 ENSMUSG00000109363 ENSMUST00000207911 Gm44668 TEC Interval_116364 chr4 110287004 110287582 + 0 NA promoter-TSS (ENSMUSG00000028546.17) protein_coding-promoter-TSS (ENSMUSG00000028546.17) 234 ENSMUSG00000028546.17 ENSMUSG00000028546 ENSMUST00000142722 Elavl4 protein_coding Interval_15249 chr10 43723385 43723706 + 0 NA Intergenic Intergenic 19542 ENSMUSG00000111377.1 ENSMUSG00000111377 ENSMUST00000214129 Gm40634 lincRNA Interval_19612 chr10 105774287 105774826 + 0 NA intron (ENSMUSG00000036009.16, intron 10 of 12) protein_coding-intron (ENSMUSG00000036009.16, intron 9 of 11) 29641 ENSMUSG00000084545.1 ENSMUSG00000084545 ENSMUST00000122596 n-R5s80 rRNA Interval_70914 chr17 15842360 15842573 + 0 NA Intergenic Intergenic -2814 ENSMUSG00000116545.1 ENSMUSG00000116545 ENSMUST00000231929 Eif3s6-ps3 processed_pseudogene Interval_45728 chr13 57321812 57322412 + 0 NA Intergenic Intergenic 45434 ENSMUSG00000114411.1 ENSMUSG00000114411 ENSMUST00000224461 Gm48176 processed_pseudogene Interval_146537 chr7 46714630 46714946 + 0 NA exon (ENSMUSG00000040026.8, exon 2 of 2) protein_coding-exon (ENSMUSG00000040026.8, exon 2 of 2) -1039 ENSMUSG00000040026.8 ENSMUSG00000040026 ENSMUST00000210913 Saa3 protein_coding Interval_86680 chr19 42518336 42519340 + 0 NA promoter-TSS (ENSMUSG00000025184.10) protein_coding-promoter-TSS (ENSMUSG00000025184.10) 44270 ENSMUSG00000090117.7 ENSMUSG00000090117 ENSMUST00000162829 Gm16541 antisense Interval_93452 chr2 73154358 73154570 + 0 NA intron (ENSMUSG00000027108.15, intron 4 of 9) protein_coding-intron (ENSMUSG00000027108.15, intron 5 of 10) -22147 ENSMUSG00000083976.1 ENSMUSG00000083976 ENSMUST00000117304 Gm13664 processed_pseudogene Interval_137613 chr6 75643696 75644699 + 0 NA Intergenic Intergenic -70739 ENSMUSG00000107830.1 ENSMUSG00000107830 ENSMUST00000203062 4933439N06Rik TEC Interval_92100 chr2 53190736 53192604 + 0 NA promoter-TSS (ENSMUSG00000026960.6) protein_coding-promoter-TSS (ENSMUSG00000026960.6) -56 ENSMUSG00000026960.6 ENSMUSG00000026960 ENSMUST00000028336 Arl6ip6 protein_coding Interval_146924 chr7 55905615 55905891 + 0 NA intron (ENSMUSG00000030447.15, intron 18 of 23) protein_coding-intron (ENSMUSG00000030447.15, intron 20 of 30) -2442 ENSMUSG00000092526.1 ENSMUSG00000092526 ENSMUST00000173150 Gm17907 processed_pseudogene Interval_127090 chr5 100213720 100215196 + 0 NA intron (ENSMUSG00000100157.6, intron 1 of 2) lincRNA-intron (ENSMUSG00000100157.6, intron 1 of 3) 3750 ENSMUSG00000100157.6 ENSMUSG00000100157 ENSMUST00000188902 2310034O05Rik lincRNA Interval_92091 chr2 53129006 53130044 + 0 NA intron (ENSMUSG00000036053.17, intron 26 of 26) protein_coding-intron (ENSMUSG00000036053.17, intron 25 of 26) 61662 ENSMUSG00000061136.16 ENSMUSG00000061136 ENSMUST00000132031 Prpf40a protein_coding Interval_165824 chr9 53585519 53585807 + 0 NA intron (ENSMUSG00000032047.5, intron 9 of 11) protein_coding-intron (ENSMUSG00000032047.5, intron 9 of 11) -1906 ENSMUSG00000032047.5 ENSMUSG00000032047 ENSMUST00000167130 Acat1 protein_coding Interval_97812 chr2 144224169 144225206 + 0 NA Intergenic Intergenic -18554 ENSMUSG00000085127.1 ENSMUSG00000085127 ENSMUST00000146746 4930444E06Rik antisense Interval_5191 chr1 86376145 86376453 + 0 NA TTS (ENSMUSG00000110510.1) processed_pseudogene-TTS (ENSMUSG00000110510.1) 1977 ENSMUSG00000110510.1 ENSMUSG00000110510 ENSMUST00000212977 Gm45908 processed_pseudogene Interval_164803 chr9 42017271 42017477 + 0 NA intron (ENSMUSG00000049313.8, intron 24 of 47) protein_coding-intron (ENSMUSG00000049313.8, intron 24 of 47) -5241 ENSMUSG00000086360.1 ENSMUSG00000086360 ENSMUST00000143710 Gm16214 antisense Interval_136467 chr6 54714731 54715587 + 0 NA Intergenic Intergenic 21513 ENSMUSG00000108283.1 ENSMUSG00000108283 ENSMUST00000204345 Gm44008 TEC Interval_1876 chr1 34247771 34248078 + 0 NA intron (ENSMUSG00000026131.20, intron 4 of 22) protein_coding-intron (ENSMUSG00000026131.20, intron 60 of 97) 23204 ENSMUSG00000103001.1 ENSMUSG00000103001 ENSMUST00000194920 A930005N03Rik TEC Interval_123483 chr5 32826882 32827413 + 0 NA promoter-TSS (ENSMUSG00000093574.1) protein_coding-promoter-TSS (ENSMUSG00000093574.1) -38 ENSMUSG00000093574.1 ENSMUSG00000093574 ENSMUST00000144673 Gm20671 protein_coding Interval_143677 chr7 14337159 14337396 + 0 NA Intergenic Intergenic -3720 ENSMUSG00000099216.1 ENSMUSG00000099216 ENSMUST00000184356 Obox8 protein_coding Interval_8237 chr1 136658331 136661004 + 0 NA Intergenic Intergenic -23729 ENSMUSG00000097113.7 ENSMUSG00000097113 ENSMUST00000180962 Gm19705 lincRNA Interval_154868 chr8 24505688 24506194 + 0 NA promoter-TSS (ENSMUSG00000109237.1) TEC-promoter-TSS (ENSMUSG00000109237.1) -489 ENSMUSG00000109237.1 ENSMUSG00000109237 ENSMUST00000208727 9130214F15Rik TEC Interval_131299 chr5 136252491 136253489 + 0 NA intron (ENSMUSG00000029705.17, intron 18 of 20) protein_coding-intron (ENSMUSG00000029705.17, intron 17 of 20) -22006 ENSMUSG00000086220.1 ENSMUSG00000086220 ENSMUST00000148082 Gm16599 antisense Interval_9446 chr1 157220782 157221286 + 0 NA intron (ENSMUSG00000070565.11, intron 2 of 3) protein_coding-intron (ENSMUSG00000070565.11, intron 4 of 17) 10157 ENSMUSG00000070565.11 ENSMUSG00000070565 ENSMUST00000143080 Rasal2 protein_coding Interval_144748 chr7 27981960 27982890 + 0 NA Intergenic Intergenic -7057 ENSMUSG00000063047.9 ENSMUSG00000063047 ENSMUST00000207098 Zfp780b protein_coding Interval_35743 chr12 28805015 28805213 + 0 NA intron (ENSMUSG00000036613.8, intron 4 of 9) protein_coding-intron (ENSMUSG00000036613.8, intron 4 of 9) -5024 ENSMUSG00000113886.1 ENSMUSG00000113886 ENSMUST00000222829 Gm48905 sense_intronic Interval_126157 chr5 80132313 80132534 + 0 NA Intergenic Intergenic 33515 ENSMUSG00000095594.1 ENSMUSG00000095594 ENSMUST00000177635 Gm24304 snRNA Interval_43091 chr13 23792445 23792910 + 0 NA Intergenic Intergenic 11922 ENSMUSG00000087173.1 ENSMUSG00000087173 ENSMUST00000144770 Gm11337 antisense Interval_99746 chr2 164640830 164642205 + 0 NA Intergenic Intergenic 1683 ENSMUSG00000083740.1 ENSMUSG00000083740 ENSMUST00000121070 Gm11456 processed_pseudogene Interval_76050 chr17 74589880 74590157 + 0 NA intron (ENSMUSG00000024073.16, intron 11 of 72) protein_coding-intron (ENSMUSG00000024073.16, intron 11 of 72) 27101 ENSMUSG00000097546.1 ENSMUSG00000097546 ENSMUST00000181387 Gm26749 antisense Interval_70333 chr17 8580151 8580837 + 0 NA intron (ENSMUSG00000023868.17, intron 1 of 3) protein_coding-intron (ENSMUSG00000023868.17, intron 1 of 21) -11634 ENSMUSG00000084390.1 ENSMUSG00000084390 ENSMUST00000119013 Gm15425 processed_pseudogene Interval_4267 chr1 72264080 72266004 + 0 NA intron (ENSMUSG00000026189.13, intron 6 of 7) protein_coding-intron (ENSMUSG00000026189.13, intron 6 of 7) 10034 ENSMUSG00000093843.1 ENSMUSG00000093843 ENSMUST00000179876 Gm25939 snRNA Interval_96986 chr2 130279218 130280504 + 0 NA TTS (ENSMUSG00000027405.16) protein_coding-TTS (ENSMUSG00000027405.16) 1845 ENSMUSG00000065272.1 ENSMUSG00000065272 ENSMUST00000083338 Snord57 snoRNA Interval_1045 chr1 14381980 14382792 + 0 NA Intergenic Intergenic -77816 ENSMUSG00000025932.14 ENSMUSG00000025932 ENSMUST00000185329 Eya1 protein_coding Interval_48315 chr13 98060156 98060422 + 0 NA intron (ENSMUSG00000021662.11, intron 4 of 34) protein_coding-intron (ENSMUSG00000021662.11, intron 4 of 35) -43872 ENSMUSG00000021662.11 ENSMUSG00000021662 ENSMUST00000224866 Arhgef28 protein_coding Interval_141096 chr6 124943229 124943823 + 0 NA Intergenic Intergenic 8239 ENSMUSG00000107578.1 ENSMUSG00000107578 ENSMUST00000205209 Gm32536 processed_pseudogene Interval_168575 chr9 83707670 83708372 + 0 NA Intergenic Intergenic 16546 ENSMUSG00000100155.1 ENSMUSG00000100155 ENSMUST00000189326 Gm2109 lincRNA Interval_44404 chr13 44659980 44660676 + 0 NA Intergenic Intergenic 38146 ENSMUSG00000113730.1 ENSMUSG00000113730 ENSMUST00000221956 Gm47805 lincRNA Interval_165019 chr9 43967999 43968597 + 0 NA intron (ENSMUSG00000111758.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000111758.1, intron 1 of 2) 1873 ENSMUSG00000111758.1 ENSMUSG00000111758 ENSMUST00000217507 Gm30373 lincRNA Interval_30304 chr11 93277634 93278158 + 0 NA intron (ENSMUSG00000056158.14, intron 2 of 8) protein_coding-intron (ENSMUSG00000056158.14, intron 3 of 9) 135428 ENSMUSG00000064743.1 ENSMUSG00000064743 ENSMUST00000082809 Gm24856 snRNA Interval_128387 chr5 113054072 113055201 + 0 NA Intergenic Intergenic -5877 ENSMUSG00000105406.1 ENSMUSG00000105406 ENSMUST00000198638 Gm43247 processed_pseudogene Interval_110987 chr4 11043031 11043827 + 0 NA Intergenic Intergenic 32754 ENSMUSG00000050323.14 ENSMUSG00000050323 ENSMUST00000141019 Ndufaf6 protein_coding Interval_114517 chr4 82000988 82001270 + 0 NA Intergenic Intergenic 60092 ENSMUSG00000092661.1 ENSMUSG00000092661 ENSMUST00000174920 Gm22402 miRNA Interval_157556 chr8 71405489 71407042 + 0 NA exon (ENSMUSG00000046295.13, exon 2 of 9) protein_coding-exon (ENSMUSG00000046295.13, exon 2 of 9) -1426 ENSMUSG00000046295.13 ENSMUSG00000046295 ENSMUST00000136522 Ankle1 protein_coding Interval_53359 chr14 56626859 56627101 + 0 NA intron (ENSMUSG00000054509.7, intron 24 of 34) protein_coding-intron (ENSMUSG00000054509.7, intron 24 of 34) -6467 ENSMUSG00000090038.7 ENSMUSG00000090038 ENSMUST00000161382 Gm16573 antisense Interval_143208 chr7 4507364 4508657 + 0 NA promoter-TSS (ENSMUSG00000064179.13) protein_coding-promoter-TSS (ENSMUSG00000064179.13) 7965 ENSMUSG00000064179.13 ENSMUSG00000064179 ENSMUST00000163560 Tnnt1 protein_coding Interval_6729 chr1 119036030 119036322 + 0 NA intron (ENSMUSG00000048402.14, intron 1 of 6) protein_coding-intron (ENSMUSG00000048402.14, intron 1 of 13) 17163 ENSMUSG00000048402.14 ENSMUSG00000048402 ENSMUST00000159678 Gli2 protein_coding Interval_173769 chrX 103879500 103879796 + 0 NA Intergenic Intergenic 8964 ENSMUSG00000082322.2 ENSMUSG00000082322 ENSMUST00000118700 Gm9164 processed_pseudogene Interval_9210 chr1 155082922 155084140 + 0 NA promoter-TSS (ENSMUSG00000096950.2) lincRNA-promoter-TSS (ENSMUSG00000096950.2) -265 ENSMUSG00000096950.2 ENSMUSG00000096950 ENSMUST00000181160 Gm9530 lincRNA Interval_158799 chr8 86728125 86729133 + 0 NA intron (ENSMUSG00000036840.5, intron 1 of 1) protein_coding-intron (ENSMUSG00000036840.5, intron 1 of 1) -16824 ENSMUSG00000074178.3 ENSMUSG00000074178 ENSMUST00000098532 Gm10638 antisense Interval_149034 chr7 92550817 92551318 + 0 NA Intergenic Intergenic -10082 ENSMUSG00000030613.13 ENSMUSG00000030613 ENSMUST00000085017 Ccdc90b protein_coding Interval_97327 chr2 134471682 134472495 + 0 NA Intergenic Intergenic 82219 ENSMUSG00000027261.2 ENSMUSG00000027261 ENSMUST00000140794 Hao1 protein_coding Interval_6552 chr1 116297977 116298176 + 0 NA intron (ENSMUSG00000070695.4, intron 13 of 23) protein_coding-intron (ENSMUSG00000070695.4, intron 13 of 23) 96337 ENSMUSG00000092948.1 ENSMUSG00000092948 ENSMUST00000175207 Gm23393 miRNA Interval_22142 chr11 6590664 6591423 + 0 NA intron (ENSMUSG00000000378.15, intron 4 of 4) protein_coding-intron (ENSMUSG00000000378.15, intron 6 of 9) -2005 ENSMUSG00000000378.15 ENSMUSG00000000378 ENSMUST00000161667 Ccm2 protein_coding Interval_30051 chr11 88895785 88896125 + 0 NA Intergenic Intergenic -9166 ENSMUSG00000065012.1 ENSMUSG00000065012 ENSMUST00000083078 Gm23507 snRNA Interval_33481 chr11 116808401 116808867 + 0 NA intron (ENSMUSG00000020814.13, intron 4 of 4) protein_coding-intron (ENSMUSG00000020814.13, intron 3 of 3) 19369 ENSMUSG00000020814.13 ENSMUSG00000020814 ENSMUST00000150015 Mxra7 protein_coding Interval_130436 chr5 127616812 127617815 + 0 NA promoter-TSS (ENSMUSG00000029416.17) protein_coding-promoter-TSS (ENSMUSG00000029416.17) 321 ENSMUSG00000105362.1 ENSMUSG00000105362 ENSMUST00000196415 Gm43474 TEC Interval_115581 chr4 101062103 101062321 + 0 NA Intergenic Intergenic -6950 ENSMUSG00000102578.1 ENSMUSG00000102578 ENSMUST00000192528 Gm10576 TEC Interval_54869 chr14 75915555 75915995 + 0 NA intron (ENSMUSG00000067995.4, intron 6 of 7) protein_coding-intron (ENSMUSG00000067995.4, intron 6 of 7) -39234 ENSMUSG00000046523.5 ENSMUSG00000046523 ENSMUST00000050120 Kctd4 protein_coding Interval_6009 chr1 93874511 93874804 + 0 NA TTS (ENSMUSG00000094651.2) protein_coding-TTS (ENSMUSG00000094651.2) 13351 ENSMUSG00000094651.2 ENSMUSG00000094651 ENSMUST00000187896 Gal3st2 protein_coding Interval_146397 chr7 45678990 45679246 + 0 NA exon (ENSMUSG00000040364.8, exon 4 of 4) protein_coding-exon (ENSMUSG00000040364.8, exon 4 of 4) -5311 ENSMUSG00000070564.15 ENSMUSG00000070564 ENSMUST00000183120 Ntn5 protein_coding Interval_138377 chr6 87737887 87738213 + 0 NA intron (ENSMUSG00000068263.11, intron 1 of 2) protein_coding-intron (ENSMUSG00000068263.11, intron 2 of 7) -6902 ENSMUSG00000108079.1 ENSMUSG00000108079 ENSMUST00000205253 Gm44210 antisense Interval_110917 chr4 10158229 10158998 + 0 NA Intergenic Intergenic 199259 ENSMUSG00000082501.1 ENSMUSG00000082501 ENSMUST00000120635 Gm11835 processed_pseudogene Interval_27221 chr11 64281896 64282111 + 0 NA Intergenic Intergenic 117430 ENSMUSG00000087622.1 ENSMUSG00000087622 ENSMUST00000145095 Gm12290 lincRNA Interval_82527 chr18 74963264 74963798 + 0 NA Intergenic Intergenic -2269 ENSMUSG00000053846.5 ENSMUSG00000053846 ENSMUST00000235783 Lipg protein_coding Interval_97557 chr2 139815363 139815576 + 0 NA Intergenic Intergenic -47828 ENSMUSG00000084207.1 ENSMUSG00000084207 ENSMUST00000120773 Gm14070 processed_pseudogene Interval_65545 chr16 23224402 23226322 + 0 NA promoter-TSS (ENSMUSG00000045231.5) processed_transcript-promoter-TSS (ENSMUSG00000045231.5) 122 ENSMUSG00000045231.5 ENSMUSG00000045231 ENSMUST00000231570 BC106179 processed_transcript Interval_162506 chr9 3415222 3416083 + 0 NA intron (ENSMUSG00000025898.6, intron 3 of 7) protein_coding-intron (ENSMUSG00000025898.6, intron 3 of 17) 11564 ENSMUSG00000025898.6 ENSMUSG00000025898 ENSMUST00000212101 Cwf19l2 protein_coding Interval_121207 chr4 154052996 154053319 + 0 NA Intergenic Intergenic -5029 ENSMUSG00000082073.1 ENSMUSG00000082073 ENSMUST00000117605 Gm13114 processed_pseudogene Interval_54189 chr14 66077641 66077983 + 0 NA promoter-TSS (ENSMUSG00000022039.6) protein_coding-promoter-TSS (ENSMUSG00000022039.6) -115 ENSMUSG00000022039.6 ENSMUSG00000022039 ENSMUST00000225667 Adam2 protein_coding Interval_90183 chr2 28805857 28806928 + 0 NA intron (ENSMUSG00000026807.8, intron 11 of 12) protein_coding-intron (ENSMUSG00000026807.8, intron 11 of 12) 1439 ENSMUSG00000083115.1 ENSMUSG00000083115 ENSMUST00000117677 Gm13386 processed_pseudogene Interval_152466 chr7 133148659 133149522 + 0 NA Intergenic Intergenic 20839 ENSMUSG00000109816.1 ENSMUSG00000109816 ENSMUST00000209850 4930483O08Rik lincRNA Interval_117346 chr4 123139341 123140230 + 0 NA promoter-TSS (ENSMUSG00000028651.12) protein_coding-promoter-TSS (ENSMUSG00000028651.12) 145 ENSMUSG00000028651.12 ENSMUSG00000028651 ENSMUST00000137778 Ppie protein_coding Interval_120264 chr4 145028403 145029699 + 0 NA intron (ENSMUSG00000020220.16, intron 47 of 51) protein_coding-intron (ENSMUSG00000020220.16, intron 63 of 67) -70203 ENSMUSG00000103911.1 ENSMUSG00000103911 ENSMUST00000193467 Gm38074 TEC Interval_37418 chr12 68039478 68039868 + 0 NA Intergenic Intergenic 27364 ENSMUSG00000113526.1 ENSMUSG00000113526 ENSMUST00000220843 Gm47453 lincRNA Interval_31845 chr11 103315203 103315730 + 0 NA Intergenic Intergenic 17929 ENSMUSG00000034255.17 ENSMUSG00000034255 ENSMUST00000092557 Arhgap27 protein_coding Interval_88811 chr2 11340950 11341158 + 0 NA intron (ENSMUSG00000086006.2, intron 1 of 3) lincRNA-intron (ENSMUSG00000086006.2, intron 1 of 3) 1566 ENSMUSG00000086006.2 ENSMUSG00000086006 ENSMUST00000131188 Gm13293 lincRNA Interval_125141 chr5 64826232 64826829 + 0 NA promoter-TSS (ENSMUSG00000029178.14) protein_coding-promoter-TSS (ENSMUSG00000029178.14) 22516 ENSMUSG00000106205.1 ENSMUSG00000106205 ENSMUST00000198074 C230096K16Rik TEC Interval_16507 chr10 63264148 63264769 + 0 NA exon (ENSMUSG00000020064.9, exon 4 of 4) protein_coding-exon (ENSMUSG00000020064.9, exon 4 of 4) -5632 ENSMUSG00000112759.1 ENSMUSG00000112759 ENSMUST00000217955 Gm47615 TEC Interval_59444 chr15 53197887 53198379 + 0 NA intron (ENSMUSG00000061731.9, intron 1 of 10) protein_coding-intron (ENSMUSG00000061731.9, intron 1 of 10) -90265 ENSMUSG00000061731.9 ENSMUSG00000061731 ENSMUST00000140798 Ext1 protein_coding Interval_155446 chr8 33636004 33636632 + 0 NA promoter-TSS (ENSMUSG00000052906.7) protein_coding-promoter-TSS (ENSMUSG00000052906.7) -64 ENSMUSG00000052906.7 ENSMUSG00000052906 ENSMUST00000210807 Ubxn8 protein_coding Interval_35387 chr12 21229245 21229957 + 0 NA intron (ENSMUSG00000052632.16, intron 15 of 27) protein_coding-intron (ENSMUSG00000052632.16, intron 14 of 26) 17722 ENSMUSG00000118655.1 ENSMUSG00000118655 ENSMUST00000172962 AC156032.1 processed_transcript Interval_85363 chr19 25218166 25219455 + 0 NA Intergenic Intergenic -52594 ENSMUSG00000065634.1 ENSMUSG00000065634 ENSMUST00000083700 Gm24252 snoRNA Interval_137463 chr6 72605058 72605906 + 0 NA promoter-TSS (ENSMUSG00000056666.13) protein_coding-promoter-TSS (ENSMUSG00000056666.13) 20 ENSMUSG00000108368.1 ENSMUSG00000108368 ENSMUST00000206112 Gm45053 TEC Interval_127225 chr5 101658627 101659819 + 0 NA exon (ENSMUSG00000035187.10, exon 3 of 3) protein_coding-exon (ENSMUSG00000035187.10, exon 3 of 3) 5773 ENSMUSG00000035187.10 ENSMUSG00000035187 ENSMUST00000044125 Nkx6-1 protein_coding Interval_151542 chr7 123398817 123399484 + 0 NA intron (ENSMUSG00000030763.7, intron 1 of 10) protein_coding-intron (ENSMUSG00000030763.7, intron 1 of 10) -16379 ENSMUSG00000088449.1 ENSMUSG00000088449 ENSMUST00000157824 Gm23559 snRNA Interval_169890 chr9 102767902 102768745 + 0 NA Intergenic Intergenic -1814 ENSMUSG00000102204.1 ENSMUSG00000102204 ENSMUST00000192388 Gm36958 TEC Interval_120036 chr4 141467190 141467724 + 0 NA TTS (ENSMUSG00000006215.12) protein_coding-TTS (ENSMUSG00000006215.12) 20855 ENSMUSG00000040761.16 ENSMUSG00000040761 ENSMUST00000152081 Spen protein_coding Interval_72088 chr17 27969102 27970164 + 0 NA intron (ENSMUSG00000024219.16, intron 1 of 23) protein_coding-intron (ENSMUSG00000024219.16, intron 1 of 24) -4317 ENSMUSG00000085846.1 ENSMUSG00000085846 ENSMUST00000145924 Gm15597 antisense Interval_133091 chr5 149745094 149745795 + 0 NA exon (ENSMUSG00000051950.10, exon 11 of 15) protein_coding-exon (ENSMUSG00000051950.10, exon 11 of 15) 5912 ENSMUSG00000051950.10 ENSMUSG00000051950 ENSMUST00000201088 B3glct protein_coding Interval_73053 chr17 34436582 34438777 + 0 NA intron (ENSMUSG00000057246.16, intron 6 of 17) protein_coding-intron (ENSMUSG00000057246.16, intron 6 of 19) -11088 ENSMUSG00000057246.16 ENSMUSG00000057246 ENSMUST00000235202 BC051142 protein_coding Interval_157618 chr8 71741332 71742520 + 0 NA Intergenic Intergenic -16222 ENSMUSG00000070000.13 ENSMUSG00000070000 ENSMUST00000125092 Fcho1 protein_coding Interval_17952 chr10 81041517 81041907 + 0 NA Intergenic Intergenic -7800 ENSMUSG00000046822.14 ENSMUSG00000046822 ENSMUST00000152177 Slc39a3 protein_coding Interval_28127 chr11 73026568 73027355 + 0 NA intron (ENSMUSG00000020785.17, intron 3 of 14) protein_coding-intron (ENSMUSG00000020785.17, intron 3 of 15) 7953 ENSMUSG00000020785.17 ENSMUSG00000020785 ENSMUST00000145834 Camkk1 protein_coding Interval_85077 chr19 22303057 22304867 + 0 NA intron (ENSMUSG00000052387.16, intron 1 of 24) protein_coding-intron (ENSMUSG00000052387.16, intron 1 of 24) -68344 ENSMUSG00000088558.1 ENSMUSG00000088558 ENSMUST00000157933 Gm22506 snoRNA Interval_153263 chr7 143013452 143014105 + 0 NA intron (ENSMUSG00000000244.17, intron 4 of 7) protein_coding-intron (ENSMUSG00000000244.17, intron 4 of 8) 8088 ENSMUSG00000000244.17 ENSMUSG00000000244 ENSMUST00000154264 Tspan32 protein_coding Interval_167041 chr9 64768872 64769495 + 0 NA Intergenic Intergenic -42453 ENSMUSG00000104953.1 ENSMUSG00000104953 ENSMUST00000197528 Gm47308 miRNA Interval_91986 chr2 52138959 52139776 + 0 NA intron (ENSMUSG00000026950.18, intron 164 of 164) protein_coding-intron (ENSMUSG00000026950.18, intron 73 of 73) 27234 ENSMUSG00000036202.16 ENSMUSG00000036202 ENSMUST00000152178 Rif1 protein_coding Interval_25202 chr11 45317165 45317400 + 0 NA Intergenic Intergenic -20892 ENSMUSG00000104099.1 ENSMUSG00000104099 ENSMUST00000195753 Gm37312 TEC Interval_87823 chr19 56295059 56295338 + 0 NA intron (ENSMUSG00000025075.14, intron 1 of 9) protein_coding-intron (ENSMUSG00000025075.14, intron 2 of 13) 7202 ENSMUSG00000025075.14 ENSMUSG00000025075 ENSMUST00000165522 Habp2 protein_coding Interval_117248 chr4 120967532 120967740 + 0 NA TTS (ENSMUSG00000032870.8) protein_coding-TTS (ENSMUSG00000032870.8) 5686 ENSMUSG00000106436.1 ENSMUSG00000106436 ENSMUST00000199525 Mir7015 miRNA Interval_12951 chr10 8654175 8654346 + 0 NA Intergenic Intergenic 11326 ENSMUSG00000077582.1 ENSMUSG00000077582 ENSMUST00000104394 Gm24374 snRNA Interval_130031 chr5 123801838 123802353 + 0 NA exon (ENSMUSG00000029414.11, exon 47 of 64) protein_coding-exon (ENSMUSG00000029414.11, exon 47 of 64) 52379 ENSMUSG00000029414.11 ENSMUSG00000029414 ENSMUST00000197002 Kntc1 protein_coding Interval_20962 chr10 122794187 122794922 + 0 NA intron (ENSMUSG00000034613.12, intron 2 of 5) protein_coding-intron (ENSMUSG00000034613.12, intron 2 of 9) -2071 ENSMUSG00000112220.1 ENSMUSG00000112220 ENSMUST00000220013 Gm36208 antisense Interval_10883 chr1 176608498 176608904 + 0 NA Intergenic Intergenic 33857 ENSMUSG00000103471.1 ENSMUSG00000103471 ENSMUST00000193453 Gm17966 processed_pseudogene Interval_16625 chr10 66499008 66499415 + 0 NA Intergenic Intergenic 15658 ENSMUSG00000077439.1 ENSMUSG00000077439 ENSMUST00000104251 Gm22594 snoRNA Interval_21825 chr11 4582100 4582410 + 0 NA intron (ENSMUSG00000034354.17, intron 1 of 17) protein_coding-intron (ENSMUSG00000034354.17, intron 1 of 17) 20475 ENSMUSG00000081974.3 ENSMUSG00000081974 ENSMUST00000122068 Gm11960 transcribed_processed_pseudogene Interval_32481 chr11 107793174 107795182 + 0 NA intron (ENSMUSG00000087184.1, intron 1 of 1) protein_coding-intron (ENSMUSG00000020723.3, intron 1 of 3) 312 ENSMUSG00000087184.1 ENSMUSG00000087184 ENSMUST00000141271 Gm11650 processed_transcript Interval_49334 chr13 111237465 111238323 + 0 NA Intergenic Intergenic -8463 ENSMUSG00000114824.1 ENSMUSG00000114824 ENSMUST00000225326 3110015C05Rik lincRNA Interval_87321 chr19 47659103 47659333 + 0 NA intron (ENSMUSG00000025064.15, intron 33 of 52) protein_coding-intron (ENSMUSG00000025064.15, intron 33 of 53) 16618 ENSMUSG00000025064.15 ENSMUSG00000025064 ENSMUST00000235883 Col17a1 protein_coding Interval_123244 chr5 30868962 30870229 + 0 NA promoter-TSS (ENSMUSG00000038828.13) protein_coding-promoter-TSS (ENSMUSG00000038828.13) -38 ENSMUSG00000038828.13 ENSMUSG00000038828 ENSMUST00000202008 Tmem214 protein_coding Interval_160863 chr8 114133043 114134473 + 0 NA exon (ENSMUSG00000031767.13, exon 1 of 4) protein_coding-exon (ENSMUSG00000031767.13, exon 1 of 4) 117 ENSMUSG00000031767.13 ENSMUSG00000031767 ENSMUST00000134593 Nudt7 protein_coding Interval_84300 chr19 9924295 9924933 + 0 NA TTS (ENSMUSG00000118008.1) lincRNA-TTS (ENSMUSG00000118008.1) 3920 ENSMUSG00000118008.1 ENSMUSG00000118008 ENSMUST00000236750 Gm36913 lincRNA Interval_119191 chr4 136104703 136105450 + 0 NA Intergenic Intergenic -30104 ENSMUSG00000082877.1 ENSMUSG00000082877 ENSMUST00000121307 Gm13009 processed_pseudogene Interval_103515 chr3 46101123 46101789 + 0 NA Intergenic Intergenic 122878 ENSMUSG00000089584.1 ENSMUSG00000089584 ENSMUST00000158959 Gm23337 snRNA Interval_160242 chr8 107402666 107404467 + 0 NA promoter-TSS (ENSMUSG00000003849.8) protein_coding-promoter-TSS (ENSMUSG00000003849.8) -360 ENSMUSG00000003849.8 ENSMUSG00000003849 ENSMUST00000003947 Nqo1 protein_coding Interval_50607 chr14 16483853 16484550 + 0 NA intron (ENSMUSG00000017491.9, intron 3 of 7) protein_coding-intron (ENSMUSG00000017491.9, intron 3 of 7) 61015 ENSMUSG00000017485.11 ENSMUSG00000017485 ENSMUST00000224460 Top2b protein_coding Interval_4017 chr1 66562569 66562751 + 0 NA intron (ENSMUSG00000055567.18, intron 22 of 63) protein_coding-intron (ENSMUSG00000055567.18, intron 22 of 64) 94213 ENSMUSG00000055567.18 ENSMUSG00000055567 ENSMUST00000152844 Unc80 protein_coding Interval_84681 chr19 15054461 15055235 + 0 NA Intergenic Intergenic -94082 ENSMUSG00000063586.1 ENSMUSG00000063586 ENSMUST00000072982 Gm5513 processed_pseudogene Interval_25499 chr11 49264822 49265046 + 0 NA Intergenic Intergenic -13370 ENSMUSG00000059864.2 ENSMUSG00000059864 ENSMUST00000078932 Olfr1393 protein_coding Interval_11042 chr1 178733950 178735326 + 0 NA intron (ENSMUSG00000026494.12, intron 4 of 14) protein_coding-intron (ENSMUSG00000026494.12, intron 4 of 14) -21170 ENSMUSG00000102922.1 ENSMUSG00000102922 ENSMUST00000192621 Gm34176 processed_pseudogene Interval_30870 chr11 96986998 96988546 + 0 NA Intergenic Intergenic -10061 ENSMUSG00000018678.13 ENSMUSG00000018678 ENSMUST00000062652 Sp2 protein_coding Interval_4482 chr1 74455884 74456110 + 0 NA intron (ENSMUSG00000033364.13, intron 17 of 19) protein_coding-intron (ENSMUSG00000033364.13, intron 17 of 23) 32311 ENSMUSG00000026175.12 ENSMUSG00000026175 ENSMUST00000163018 Vil1 protein_coding Interval_18160 chr10 83088772 83089199 + 0 NA intron (ENSMUSG00000034612.7, intron 1 of 2) protein_coding-intron (ENSMUSG00000034612.7, intron 1 of 2) 53053 ENSMUSG00000090200.1 ENSMUSG00000090200 ENSMUST00000160997 1700025N21Rik antisense Interval_6980 chr1 121517654 121518381 + 0 NA intron (ENSMUSG00000050534.8, intron 1 of 1) protein_coding-intron (ENSMUSG00000050534.8, intron 1 of 1) -2566 ENSMUSG00000081130.1 ENSMUSG00000081130 ENSMUST00000119136 Gm8217 processed_pseudogene Interval_78896 chr18 21242808 21243005 + 0 NA intron (ENSMUSG00000042680.8, intron 1 of 4) protein_coding-intron (ENSMUSG00000042680.8, intron 1 of 5) 57217 ENSMUSG00000042680.8 ENSMUSG00000042680 ENSMUST00000234115 Garem1 protein_coding Interval_68090 chr16 64937816 64938791 + 0 NA intron (ENSMUSG00000050783.5, intron 2 of 2) protein_coding-intron (ENSMUSG00000050783.5, intron 2 of 2) -19219 ENSMUSG00000116811.1 ENSMUSG00000116811 ENSMUST00000232275 Gm16385 processed_pseudogene Interval_66823 chr16 37907839 37908251 + 0 NA Intergenic Intergenic -8451 ENSMUSG00000046961.8 ENSMUSG00000046961 ENSMUST00000061274 Gpr156 protein_coding Interval_13680 chr10 20966026 20966718 + 0 NA intron (ENSMUSG00000019986.17, intron 5 of 23) protein_coding-intron (ENSMUSG00000019986.17, intron 6 of 23) 67421 ENSMUSG00000111006.1 ENSMUSG00000111006 ENSMUST00000215366 Gm10826 TEC Interval_121442 chr4 155823600 155823830 + 0 NA exon (ENSMUSG00000029068.16, exon 11 of 11) protein_coding-exon (ENSMUSG00000029068.16, exon 11 of 11) -7904 ENSMUSG00000065990.12 ENSMUSG00000065990 ENSMUST00000105591 Aurkaip1 protein_coding Interval_123095 chr5 29662876 29663173 + 0 NA intron (ENSMUSG00000039000.8, intron 19 of 22) protein_coding-intron (ENSMUSG00000039000.8, intron 19 of 22) -28398 ENSMUSG00000104648.1 ENSMUSG00000104648 ENSMUST00000195937 Gm42570 processed_pseudogene Interval_145251 chr7 30943911 30946305 + 0 NA TTS (ENSMUSG00000058239.13) protein_coding-TTS (ENSMUSG00000058239.13) -1076 ENSMUSG00000050440.8 ENSMUSG00000050440 ENSMUST00000062620 Hamp protein_coding Interval_159967 chr8 105469258 105469945 + 0 NA promoter-TSS (ENSMUSG00000014846.12) protein_coding-promoter-TSS (ENSMUSG00000014846.12) -191 ENSMUSG00000014846.12 ENSMUSG00000014846 ENSMUST00000176419 Tppp3 protein_coding Interval_31574 chr11 101458218 101460141 + 0 NA TTS (ENSMUSG00000010358.13) protein_coding-TTS (ENSMUSG00000010358.13) -1789 ENSMUSG00000086347.1 ENSMUSG00000086347 ENSMUST00000142107 Gm11626 antisense Interval_134703 chr6 30519557 30521553 + 0 NA TTS (ENSMUSG00000029784.13) protein_coding-TTS (ENSMUSG00000029784.13) 6857 ENSMUSG00000029784.13 ENSMUSG00000029784 ENSMUST00000131485 Ssmem1 protein_coding Interval_97754 chr2 143837296 143837847 + 0 NA intron (ENSMUSG00000027420.13, intron 5 of 7) protein_coding-intron (ENSMUSG00000027420.13, intron 5 of 7) -18078 ENSMUSG00000082987.1 ENSMUSG00000082987 ENSMUST00000120038 Rps13-ps6 processed_pseudogene Interval_105765 chr3 89215856 89216490 + 0 NA intron (ENSMUSG00000028047.11, intron 1 of 2) protein_coding-intron (ENSMUSG00000028047.11, intron 1 of 22) -1838 ENSMUSG00000064068.15 ENSMUSG00000064068 ENSMUST00000174324 Mtx1 protein_coding Interval_147825 chr7 73846323 73846612 + 0 NA Intergenic Intergenic 26877 ENSMUSG00000105381.1 ENSMUSG00000105381 ENSMUST00000199151 Mir7234 miRNA Interval_59605 chr15 55905550 55907251 + 0 NA promoter-TSS (ENSMUSG00000060429.12) protein_coding-promoter-TSS (ENSMUSG00000060429.12) -90 ENSMUSG00000060429.12 ENSMUSG00000060429 ENSMUST00000140574 Sntb1 protein_coding Interval_155594 chr8 34953452 34954964 + 0 NA intron (ENSMUSG00000031529.5, intron 1 of 26) protein_coding-intron (ENSMUSG00000031529.5, intron 1 of 26) -12225 ENSMUSG00000054247.6 ENSMUSG00000054247 ENSMUST00000210951 Gm9939 bidirectional_promoter_lncRNA Interval_2893 chr1 48297360 48297908 + 0 NA Intergenic Intergenic 17217 ENSMUSG00000096973.1 ENSMUSG00000096973 ENSMUST00000181607 Gm5974 processed_pseudogene Interval_25254 chr11 45906430 45906744 + 0 NA exon (ENSMUSG00000006169.20, exon 8 of 8) protein_coding-exon (ENSMUSG00000006169.20, exon 8 of 8) 24190 ENSMUSG00000006169.20 ENSMUSG00000006169 ENSMUST00000133715 Clint1 protein_coding Interval_62189 chr15 88699561 88700208 + 0 NA exon (ENSMUSG00000022387.17, exon 8 of 8) protein_coding-exon (ENSMUSG00000022387.17, exon 8 of 8) 19271 ENSMUSG00000022387.17 ENSMUSG00000022387 ENSMUST00000139515 Brd1 protein_coding Interval_154596 chr8 21955480 21956923 + 0 NA Intergenic Intergenic -2513 ENSMUSG00000079112.1 ENSMUSG00000079112 ENSMUST00000110741 Fam90a1a protein_coding Interval_167232 chr9 66373599 66373855 + 0 NA exon (ENSMUSG00000038664.16, exon 2 of 2) protein_coding-exon (ENSMUSG00000038664.16, exon 2 of 2) -12985 ENSMUSG00000084437.1 ENSMUSG00000084437 ENSMUST00000122488 Gm23428 snRNA Interval_94744 chr2 93927300 93928989 + 0 NA Intergenic Intergenic 12734 ENSMUSG00000083009.1 ENSMUSG00000083009 ENSMUST00000121653 Gm1335 processed_pseudogene Interval_117717 chr4 125736898 125737126 + 0 NA Intergenic Intergenic 185405 ENSMUSG00000085562.7 ENSMUSG00000085562 ENSMUST00000144539 2610028E06Rik lincRNA Interval_136543 chr6 55392327 55392918 + 0 NA Intergenic Intergenic -12690 ENSMUSG00000108228.2 ENSMUSG00000108228 ENSMUST00000209841 6430584L05Rik lincRNA Interval_88783 chr2 10667611 10668740 + 0 NA Intergenic Intergenic 150020 ENSMUSG00000080594.1 ENSMUSG00000080594 ENSMUST00000116944 Mir669h miRNA Interval_85929 chr19 33383349 33383705 + 0 NA intron (ENSMUSG00000071573.14, intron 1 of 4) polymorphic_pseudogene-intron (ENSMUSG00000071573.14, intron 3 of 6) 8768 ENSMUSG00000071573.14 ENSMUSG00000071573 ENSMUST00000163093 Rnls polymorphic_pseudogene Interval_3727 chr1 62384125 62384492 + 0 NA intron (ENSMUSG00000052062.14, intron 18 of 21) protein_coding-intron (ENSMUSG00000052062.14, intron 17 of 21) 114953 ENSMUSG00000085400.1 ENSMUSG00000085400 ENSMUST00000147177 Pard3bos3 antisense Interval_106244 chr3 94884744 94885049 + 0 NA promoter-TSS (ENSMUSG00000005779.12) protein_coding-promoter-TSS (ENSMUSG00000005779.12) 1059 ENSMUSG00000005779.12 ENSMUSG00000005779 ENSMUST00000200513 Psmb4 protein_coding Interval_54270 chr14 67021720 67021909 + 0 NA intron (ENSMUSG00000022052.9, intron 8 of 9) protein_coding-intron (ENSMUSG00000022052.9, intron 8 of 9) 21715 ENSMUSG00000022052.9 ENSMUSG00000022052 ENSMUST00000225469 Ppp2r2a protein_coding Interval_3154 chr1 54121758 54121995 + 0 NA intron (ENSMUSG00000042807.15, intron 1 of 3) protein_coding-intron (ENSMUSG00000042807.15, intron 1 of 28) 33220 ENSMUSG00000102868.1 ENSMUSG00000102868 ENSMUST00000192858 Gm37633 TEC Interval_169351 chr9 96613257 96613762 + 0 NA intron (ENSMUSG00000032413.12, intron 1 of 19) protein_coding-intron (ENSMUSG00000032413.12, intron 1 of 23) 29206 ENSMUSG00000100522.1 ENSMUSG00000100522 ENSMUST00000190191 Gm19280 processed_pseudogene Interval_31190 chr11 98788898 98789364 + 0 NA Intergenic Intergenic -15140 ENSMUSG00000052915.14 ENSMUSG00000052915 ENSMUST00000141016 Msl1 protein_coding Interval_81127 chr18 54476017 54476301 + 0 NA promoter-TSS (ENSMUSG00000117881.1) lincRNA-promoter-TSS (ENSMUSG00000117881.1) -606 ENSMUSG00000117881.1 ENSMUSG00000117881 ENSMUST00000237842 Gm50361 lincRNA Interval_94441 chr2 91247145 91247372 + 0 NA Intergenic Intergenic -9555 ENSMUSG00000027257.13 ENSMUSG00000027257 ENSMUST00000128684 Pacsin3 protein_coding Interval_164383 chr9 36598707 36598890 + 0 NA Intergenic Intergenic -16163 ENSMUSG00000091248.1 ENSMUSG00000091248 ENSMUST00000170030 Pate8 protein_coding Interval_124974 chr5 62868561 62869611 + 0 NA intron (ENSMUSG00000090326.2, intron 8 of 9) protein_coding-intron (ENSMUSG00000090326.2, intron 7 of 8) 57412 ENSMUSG00000090326.2 ENSMUSG00000090326 ENSMUST00000170704 Dthd1 protein_coding Interval_141578 chr6 129565581 129565909 + 0 NA Intergenic Intergenic -13297 ENSMUSG00000108257.1 ENSMUSG00000108257 ENSMUST00000204963 Gm44251 processed_pseudogene Interval_105222 chr3 83971316 83971572 + 0 NA intron (ENSMUSG00000033767.14, intron 3 of 33) protein_coding-intron (ENSMUSG00000033767.14, intron 3 of 33) -63865 ENSMUSG00000033767.14 ENSMUSG00000033767 ENSMUST00000192811 Tmem131l protein_coding Interval_59268 chr15 50423564 50423862 + 0 NA Intergenic Intergenic 136815 ENSMUSG00000115478.1 ENSMUSG00000115478 ENSMUST00000227182 Gm49198 lincRNA Interval_46566 chr13 67230652 67231092 + 0 NA promoter-TSS (ENSMUSG00000114771.1) lincRNA-promoter-TSS (ENSMUSG00000114771.1) -903 ENSMUSG00000114771.1 ENSMUSG00000114771 ENSMUST00000225201 Gm49064 lincRNA Interval_12449 chr1 193541924 193542675 + 0 NA Intergenic Intergenic -32125 ENSMUSG00000097850.2 ENSMUSG00000097850 ENSMUST00000180420 Mir205hg lincRNA Interval_2198 chr1 36970986 36971193 + 0 NA Intergenic Intergenic -12662 ENSMUSG00000080054.3 ENSMUSG00000080054 ENSMUST00000116168 Rpl12-ps1 processed_pseudogene Interval_82447 chr18 74063663 74065673 + 0 NA promoter-TSS (ENSMUSG00000053861.1) protein_coding-promoter-TSS (ENSMUSG00000053861.1) -276 ENSMUSG00000024558.12 ENSMUSG00000024558 ENSMUST00000160601 Mapk4 protein_coding Interval_21745 chr11 4079990 4080898 + 0 NA Intergenic Intergenic 14696 ENSMUSG00000004748.5 ENSMUSG00000004748 ENSMUST00000123607 Mtfp1 protein_coding Interval_9171 chr1 154656548 154656869 + 0 NA intron (ENSMUSG00000004110.17, intron 5 of 11) protein_coding-intron (ENSMUSG00000004110.17, intron 3 of 46) 160233 ENSMUSG00000004110.17 ENSMUSG00000004110 ENSMUST00000186256 Cacna1e protein_coding Interval_143832 chr7 16614029 16615938 + 0 NA promoter-TSS (ENSMUSG00000058230.12) protein_coding-promoter-TSS (ENSMUSG00000058230.12) -46 ENSMUSG00000058230.12 ENSMUSG00000058230 ENSMUST00000171937 Arhgap35 protein_coding Interval_63707 chr15 102960146 102960652 + 0 NA Intergenic Intergenic 5972 ENSMUSG00000001656.3 ENSMUSG00000001656 ENSMUST00000001701 Hoxc11 protein_coding Interval_148255 chr7 80114017 80115852 + 0 NA intron (ENSMUSG00000030541.16, intron 1 of 3) protein_coding-intron (ENSMUSG00000030541.16, intron 1 of 10) 370 ENSMUSG00000030541.16 ENSMUSG00000030541 ENSMUST00000134070 Idh2 protein_coding Interval_69746 chr16 96010404 96011932 + 0 NA TTS (ENSMUSG00000022914.17) protein_coding-TTS (ENSMUSG00000022914.17) -20278 ENSMUSG00000022913.16 ENSMUSG00000022913 ENSMUST00000233134 Psmg1 protein_coding Interval_3774 chr1 63032026 63032326 + 0 NA promoter-TSS (ENSMUSG00000088953.1) snoRNA-promoter-TSS (ENSMUSG00000088953.1) -530 ENSMUSG00000088953.1 ENSMUSG00000088953 ENSMUST00000158328 Gm24942 snoRNA Interval_153582 chr8 3522801 3523287 + 0 NA promoter-TSS (ENSMUSG00000004565.15) protein_coding-promoter-TSS (ENSMUSG00000004565.15) 11243 ENSMUSG00000004567.16 ENSMUSG00000004567 ENSMUST00000161705 Mcoln1 protein_coding Interval_67320 chr16 46038552 46040038 + 0 NA intron (ENSMUSG00000022657.9, intron 13 of 14) protein_coding-intron (ENSMUSG00000022657.9, intron 13 of 14) -21122 ENSMUSG00000095243.1 ENSMUSG00000095243 ENSMUST00000177997 Gm24754 snRNA Interval_48098 chr13 95994748 95995547 + 0 NA intron (ENSMUSG00000051111.16, intron 3 of 10) protein_coding-intron (ENSMUSG00000051111.16, intron 4 of 12) -4921 ENSMUSG00000051111.16 ENSMUSG00000051111 ENSMUST00000220740 Sv2c protein_coding Interval_95280 chr2 105585632 105586434 + 0 NA intron (ENSMUSG00000086029.7, intron 2 of 3) antisense-intron (ENSMUSG00000086029.7, intron 3 of 3) -31188 ENSMUSG00000080859.1 ENSMUSG00000080859 ENSMUST00000119438 Rpl10-ps1 transcribed_processed_pseudogene Interval_166565 chr9 60939866 60940811 + 0 NA intron (ENSMUSG00000111444.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000111444.1, intron 1 of 1) 21115 ENSMUSG00000111444.1 ENSMUSG00000111444 ENSMUST00000216374 Gm47923 lincRNA Interval_113184 chr4 49181443 49181962 + 0 NA intron (ENSMUSG00000063446.4, intron 1 of 3) protein_coding-intron (ENSMUSG00000063446.4, intron 1 of 7) -107596 ENSMUSG00000064782.1 ENSMUSG00000064782 ENSMUST00000082848 Gm22685 snRNA Interval_19721 chr10 108296338 108296655 + 0 NA Intergenic Intergenic -36321 ENSMUSG00000035873.8 ENSMUSG00000035873 ENSMUST00000218332 Pawr protein_coding Interval_83732 chr19 4260858 4261312 + 0 NA TTS (ENSMUSG00000034616.17) protein_coding-TTS (ENSMUSG00000034616.17) 2793 ENSMUSG00000099290.1 ENSMUSG00000099290 ENSMUST00000184641 Mir6985 miRNA Interval_83808 chr19 4802355 4804137 + 0 NA exon (ENSMUSG00000006456.10, exon 2 of 3) protein_coding-exon (ENSMUSG00000006456.10, exon 2 of 3) 1734 ENSMUSG00000095913.1 ENSMUSG00000095913 ENSMUST00000178699 Gm21844 antisense Interval_52957 chr14 52284087 52285361 + 0 NA intron (ENSMUSG00000016831.12, intron 2 of 4) protein_coding-intron (ENSMUSG00000016831.12, intron 3 of 9) -1010 ENSMUSG00000016831.12 ENSMUSG00000016831 ENSMUST00000173361 Tox4 protein_coding Interval_35694 chr12 27903403 27904324 + 0 NA Intergenic Intergenic -76734 ENSMUSG00000113616.1 ENSMUSG00000113616 ENSMUST00000223144 Gm45941 lincRNA Interval_160356 chr8 108722440 108723530 + 0 NA intron (ENSMUSG00000038872.10, intron 1 of 9) protein_coding-intron (ENSMUSG00000038872.10, intron 1 of 9) -14608 ENSMUSG00000104292.1 ENSMUSG00000104292 ENSMUST00000191614 Gm38042 TEC Interval_118052 chr4 128646917 128647521 + 0 NA Intergenic Intergenic 9748 ENSMUSG00000084891.1 ENSMUSG00000084891 ENSMUST00000141242 Gm12958 lincRNA Interval_64747 chr16 14945906 14946184 + 0 NA intron (ENSMUSG00000068617.5, intron 5 of 9) protein_coding-intron (ENSMUSG00000068617.5, intron 5 of 9) 39439 ENSMUSG00000068617.5 ENSMUSG00000068617 ENSMUST00000229121 Efcab1 protein_coding Interval_164630 chr9 40211620 40211865 + 0 NA exon (ENSMUSG00000025602.13, exon 7 of 7) protein_coding-exon (ENSMUSG00000025602.13, exon 7 of 7) 19413 ENSMUSG00000025602.13 ENSMUSG00000025602 ENSMUST00000168832 Zfp202 protein_coding Interval_62975 chr15 98408686 98408973 + 0 NA intron (ENSMUSG00000099353.7, intron 4 of 6) transcribed_unitary_pseudogene-intron (ENSMUSG00000099353.7, intron 5 of 7) 9764 ENSMUSG00000099353.7 ENSMUSG00000099353 ENSMUST00000231222 1700031M16Rik transcribed_unitary_pseudogene Interval_4928 chr1 82724550 82725846 + 0 NA promoter-TSS (ENSMUSG00000097564.2) processed_transcript-promoter-TSS (ENSMUSG00000097564.2) -51 ENSMUSG00000097564.2 ENSMUSG00000097564 ENSMUST00000187869 C430014B12Rik processed_transcript Interval_134312 chr6 24954878 24956881 + 0 NA exon (ENSMUSG00000048022.11, exon 1 of 1) protein_coding-exon (ENSMUSG00000048022.11, exon 1 of 1) 418 ENSMUSG00000048022.11 ENSMUSG00000048022 ENSMUST00000127247 Tmem229a protein_coding Interval_149022 chr7 92152725 92152977 + 0 NA intron (ENSMUSG00000052572.19, intron 12 of 21) protein_coding-intron (ENSMUSG00000052572.19, intron 13 of 22) -33340 ENSMUSG00000109382.1 ENSMUSG00000109382 ENSMUST00000207593 4930567K12Rik antisense Interval_113354 chr4 53762486 53762848 + 0 NA exon (ENSMUSG00000028414.17, exon 9 of 9) protein_coding-exon (ENSMUSG00000028414.17, exon 9 of 9) -17038 ENSMUSG00000028417.3 ENSMUSG00000028417 ENSMUST00000030124 Tal2 protein_coding Interval_97799 chr2 144156231 144158444 + 0 NA intron (ENSMUSG00000074758.10, intron 1 of 2) lincRNA-intron (ENSMUSG00000074758.10, intron 2 of 3) -13964 ENSMUSG00000082480.1 ENSMUSG00000082480 ENSMUST00000118911 Gm11687 processed_pseudogene Interval_111200 chr4 14758951 14759371 + 0 NA intron (ENSMUSG00000023151.9, intron 4 of 7) protein_coding-intron (ENSMUSG00000023151.9, intron 4 of 8) -2316 ENSMUSG00000023151.9 ENSMUSG00000023151 ENSMUST00000108276 Lrrc69 protein_coding Interval_110464 chr3 158649122 158649339 + 0 NA Intergenic Intergenic -87096 ENSMUSG00000028176.13 ENSMUSG00000028176 ENSMUST00000198284 Lrrc7 protein_coding Interval_113103 chr4 48264398 48264763 + 0 NA intron (ENSMUSG00000028343.10, intron 1 of 2) protein_coding-intron (ENSMUSG00000028343.10, intron 1 of 11) 14872 ENSMUSG00000028343.10 ENSMUSG00000028343 ENSMUST00000148947 Erp44 protein_coding Interval_133109 chr5 149873319 149874559 + 0 NA Intergenic Intergenic -2530 ENSMUSG00000107279.1 ENSMUSG00000107279 ENSMUST00000202611 Gm43450 lincRNA Interval_7483 chr1 131744677 131746059 + 0 NA intron (ENSMUSG00000042268.10, intron 1 of 15) protein_coding-intron (ENSMUSG00000042268.10, intron 1 of 20) 1330 ENSMUSG00000042268.10 ENSMUSG00000042268 ENSMUST00000147800 Slc26a9 protein_coding Interval_57674 chr15 14780499 14780968 + 0 NA Intergenic Intergenic -45449 ENSMUSG00000092919.2 ENSMUSG00000092919 ENSMUST00000175178 Gm24080 miRNA Interval_56675 chr14 121309278 121310497 + 0 NA intron (ENSMUSG00000063410.8, intron 2 of 4) protein_coding-intron (ENSMUSG00000063410.8, intron 2 of 10) 61181 ENSMUSG00000085133.2 ENSMUSG00000085133 ENSMUST00000130256 B930095G15Rik sense_intronic Interval_21413 chr10 128455237 128455503 + 0 NA Intergenic Intergenic -3310 ENSMUSG00000098957.1 ENSMUSG00000098957 ENSMUST00000184718 Mir8105 miRNA Interval_112005 chr4 33188296 33189768 + 0 NA exon (ENSMUSG00000054659.13, exon 1 of 7) protein_coding-exon (ENSMUSG00000054659.13, exon 1 of 7) 705 ENSMUSG00000054659.13 ENSMUSG00000054659 ENSMUST00000119167 Pm20d2 protein_coding Interval_90315 chr2 29739014 29740739 + 0 NA TTS (ENSMUSG00000039844.20) protein_coding-TTS (ENSMUSG00000039844.20) -1211 ENSMUSG00000048316.3 ENSMUSG00000048316 ENSMUST00000051212 Gm9823 pseudogene Interval_48344 chr13 98358343 98359103 + 0 NA exon (ENSMUSG00000078302.5, exon 1 of 1) protein_coding-exon (ENSMUSG00000078302.5, exon 1 of 1) 4481 ENSMUSG00000078302.5 ENSMUSG00000078302 ENSMUST00000105098 Foxd1 protein_coding Interval_104727 chr3 69818284 69818781 + 0 NA Intergenic Intergenic 41390 ENSMUSG00000043461.13 ENSMUSG00000043461 ENSMUST00000171529 Sptssb protein_coding Interval_81218 chr18 56569239 56569529 + 0 NA intron (ENSMUSG00000008301.11, intron 1 of 4) protein_coding-intron (ENSMUSG00000008301.11, intron 1 of 4) 6791 ENSMUSG00000008301.11 ENSMUSG00000008301 ENSMUST00000008445 Phax protein_coding Interval_15927 chr10 59378901 59381070 + 0 NA Intergenic Intergenic -15770 ENSMUSG00000069622.5 ENSMUSG00000069622 ENSMUST00000092511 Gm10273 processed_pseudogene Interval_168595 chr9 83984861 83985066 + 0 NA intron (ENSMUSG00000032263.14, intron 3 of 10) protein_coding-intron (ENSMUSG00000032263.14, intron 3 of 10) -17956 ENSMUSG00000101077.1 ENSMUSG00000101077 ENSMUST00000185454 Gm29164 processed_pseudogene Interval_45195 chr13 53129939 53130446 + 0 NA intron (ENSMUSG00000021464.14, intron 4 of 8) protein_coding-intron (ENSMUSG00000021464.14, intron 4 of 8) 101274 ENSMUSG00000112952.1 ENSMUSG00000112952 ENSMUST00000222184 Gm48336 lincRNA Interval_84089 chr19 7143717 7144754 + 0 NA intron (ENSMUSG00000036278.7, intron 3 of 10) protein_coding-intron (ENSMUSG00000036278.7, intron 3 of 10) -38506 ENSMUSG00000047787.8 ENSMUSG00000047787 ENSMUST00000113383 Flrt1 protein_coding Interval_47681 chr13 91178535 91179912 + 0 NA intron (ENSMUSG00000021619.6, intron 2 of 6) protein_coding-intron (ENSMUSG00000021619.6, intron 2 of 7) -41229 ENSMUSG00000091419.2 ENSMUSG00000091419 ENSMUST00000164671 Gm17450 pseudogene Interval_49739 chr13 114353469 114353692 + 0 NA intron (ENSMUSG00000021764.8, intron 1 of 3) protein_coding-intron (ENSMUSG00000021764.8, intron 1 of 4) 34470 ENSMUSG00000021764.8 ENSMUSG00000021764 ENSMUST00000225978 Ndufs4 protein_coding Interval_74265 chr17 47792236 47793995 + 0 NA TTS (ENSMUSG00000023990.18) protein_coding-TTS (ENSMUSG00000023990.18) 5205 ENSMUSG00000023990.18 ENSMUSG00000023990 ENSMUST00000140715 Tfeb protein_coding Interval_83574 chr18 89966336 89967094 + 0 NA Intergenic Intergenic -22403 ENSMUSG00000098126.1 ENSMUSG00000098126 ENSMUST00000182270 Gm27037 processed_pseudogene Interval_55179 chr14 79073046 79073309 + 0 NA intron (ENSMUSG00000058997.8, intron 26 of 44) protein_coding-intron (ENSMUSG00000058997.8, intron 26 of 44) -32532 ENSMUSG00000115643.1 ENSMUSG00000115643 ENSMUST00000227294 Gm49011 processed_pseudogene Interval_9639 chr1 160645872 160646297 + 0 NA TTS (ENSMUSG00000077759.1) snoRNA-TTS (ENSMUSG00000077759.1) 511 ENSMUSG00000077759.1 ENSMUSG00000077759 ENSMUST00000104571 Gm23528 snoRNA Interval_171236 chr9 115512733 115513191 + 0 NA Intergenic Intergenic -74381 ENSMUSG00000074034.1 ENSMUSG00000074034 ENSMUST00000075898 Gm5921 processed_pseudogene Interval_74385 chr17 49812306 49812729 + 0 NA intron (ENSMUSG00000023999.14, intron 13 of 22) protein_coding-intron (ENSMUSG00000023999.14, intron 13 of 22) 9308 ENSMUSG00000090012.1 ENSMUSG00000090012 ENSMUST00000159971 Gm16555 antisense Interval_120797 chr4 150694541 150695722 + 0 NA Intergenic Intergenic -16339 ENSMUSG00000085869.1 ENSMUSG00000085869 ENSMUST00000149065 Gm16079 lincRNA Interval_45206 chr13 53191594 53192162 + 0 NA intron (ENSMUSG00000021464.14, intron 1 of 8) protein_coding-intron (ENSMUSG00000021464.14, intron 1 of 8) 83780 ENSMUSG00000021464.14 ENSMUSG00000021464 ENSMUST00000149299 Ror2 protein_coding Interval_52713 chr14 48903297 48903707 + 0 NA Intergenic Intergenic -21668 ENSMUSG00000115398.1 ENSMUSG00000115398 ENSMUST00000226616 Gm534 processed_transcript Interval_144880 chr7 28732267 28733441 + 0 NA exon (ENSMUSG00000030598.15, exon 3 of 7) protein_coding-exon (ENSMUSG00000030598.15, exon 3 of 7) 354 ENSMUSG00000030598.15 ENSMUSG00000030598 ENSMUST00000167118 Fbxo17 protein_coding Interval_85387 chr19 25399700 25400839 + 0 NA intron (ENSMUSG00000032702.16, intron 1 of 1) protein_coding-intron (ENSMUSG00000032702.16, intron 4 of 13) -21970 ENSMUSG00000032702.16 ENSMUSG00000032702 ENSMUST00000155788 Kank1 protein_coding Interval_162649 chr9 7289610 7290354 + 0 NA Intergenic Intergenic 17468 ENSMUSG00000050578.10 ENSMUSG00000050578 ENSMUST00000015394 Mmp13 protein_coding Interval_87101 chr19 46110455 46110865 + 0 NA Intergenic Intergenic -14270 ENSMUSG00000117703.1 ENSMUSG00000117703 ENSMUST00000236376 Gm50306 lincRNA Interval_158119 chr8 78899988 78900362 + 0 NA Intergenic Intergenic -30307 ENSMUSG00000069986.4 ENSMUSG00000069986 ENSMUST00000093411 Gm8054 processed_pseudogene Interval_4595 chr1 75331601 75331996 + 0 NA Intergenic Intergenic -14351 ENSMUSG00000026209.15 ENSMUSG00000026209 ENSMUST00000189282 Dnpep protein_coding Interval_108560 chr3 128954083 128954350 + 0 NA exon (ENSMUSG00000074236.3, exon 1 of 1) processed_pseudogene-exon (ENSMUSG00000074236.3, exon 1 of 1) 882 ENSMUSG00000074236.3 ENSMUSG00000074236 ENSMUST00000098624 Gm9387 processed_pseudogene Interval_77015 chr17 85633778 85634436 + 0 NA Intergenic Intergenic -13106 ENSMUSG00000099635.1 ENSMUSG00000099635 ENSMUST00000188560 Gm28528 antisense Interval_27922 chr11 70897933 70899184 + 0 NA intron (ENSMUSG00000020817.16, intron 4 of 16) protein_coding-intron (ENSMUSG00000020817.16, intron 5 of 17) 11087 ENSMUSG00000084139.1 ENSMUSG00000084139 ENSMUST00000121605 Gm12322 processed_pseudogene Interval_163026 chr9 14633934 14634543 + 0 NA intron (ENSMUSG00000013076.17, intron 1 of 13) protein_coding-intron (ENSMUSG00000013076.17, intron 1 of 13) -10303 ENSMUSG00000111198.1 ENSMUSG00000111198 ENSMUST00000214353 Gm34263 lincRNA Interval_66408 chr16 33706667 33707062 + 0 NA intron (ENSMUSG00000075254.12, intron 1 of 16) protein_coding-intron (ENSMUSG00000075254.12, intron 1 of 16) 22494 ENSMUSG00000075254.12 ENSMUSG00000075254 ENSMUST00000146518 Heg1 protein_coding Interval_163653 chr9 23254280 23255190 + 0 NA intron (ENSMUSG00000031963.8, intron 3 of 14) protein_coding-intron (ENSMUSG00000031963.8, intron 3 of 14) 31449 ENSMUSG00000031963.8 ENSMUSG00000031963 ENSMUST00000214050 Bmper protein_coding Interval_164583 chr9 39443120 39443739 + 0 NA Intergenic Intergenic -8866 ENSMUSG00000110985.1 ENSMUSG00000110985 ENSMUST00000214463 Olfr953-ps1 unprocessed_pseudogene Interval_163478 chr9 21626498 21626992 + 0 NA intron (ENSMUSG00000032187.16, intron 1 of 33) protein_coding-intron (ENSMUSG00000032187.16, intron 1 of 33) 10481 ENSMUSG00000032187.16 ENSMUSG00000032187 ENSMUST00000172996 Smarca4 protein_coding Interval_139214 chr6 97239338 97239523 + 0 NA intron (ENSMUSG00000044086.8, intron 2 of 2) protein_coding-intron (ENSMUSG00000044086.8, intron 2 of 2) 13329 ENSMUSG00000044086.8 ENSMUSG00000044086 ENSMUST00000095655 Lmod3 protein_coding Interval_146772 chr7 50451184 50451927 + 0 NA intron (ENSMUSG00000055409.14, intron 9 of 9) protein_coding-intron (ENSMUSG00000055409.14, intron 13 of 19) 124416 ENSMUSG00000085265.1 ENSMUSG00000085265 ENSMUST00000136672 Nell1os antisense Interval_34112 chr11 120704091 120705384 + 0 NA intron (ENSMUSG00000025142.18, intron 10 of 13) protein_coding-intron (ENSMUSG00000025142.18, intron 12 of 15) -4121 ENSMUSG00000025142.18 ENSMUSG00000025142 ENSMUST00000172392 Aspscr1 protein_coding Interval_76652 chr17 83165794 83167415 + 0 NA Intergenic Intergenic -45863 ENSMUSG00000117509.1 ENSMUSG00000117509 ENSMUST00000234289 Gm46606 lincRNA Interval_147123 chr7 63544418 63544714 + 0 NA TTS (ENSMUSG00000081788.2) processed_pseudogene-TTS (ENSMUSG00000081788.2) 2087 ENSMUSG00000081788.2 ENSMUSG00000081788 ENSMUST00000121016 Gm5898 processed_pseudogene Interval_109053 chr3 135484847 135486242 + 0 NA promoter-TSS (ENSMUSG00000028164.15) protein_coding-promoter-TSS (ENSMUSG00000028164.15) 1912 ENSMUSG00000105404.1 ENSMUSG00000105404 ENSMUST00000200141 Gm42807 processed_pseudogene Interval_165797 chr9 53231837 53232066 + 0 NA intron (ENSMUSG00000053289.8, intron 6 of 17) protein_coding-intron (ENSMUSG00000053289.8, intron 6 of 17) 16102 ENSMUSG00000053289.8 ENSMUSG00000053289 ENSMUST00000065630 Ddx10 protein_coding Interval_161005 chr8 116863362 116864233 + 0 NA Intergenic Intergenic 30727 ENSMUSG00000014633.15 ENSMUSG00000014633 ENSMUST00000128304 Cmc2 protein_coding Interval_116881 chr4 117946749 117947440 + 0 NA intron (ENSMUSG00000028538.12, intron 5 of 5) protein_coding-intron (ENSMUSG00000028538.12, intron 9 of 11) -17681 ENSMUSG00000028539.14 ENSMUSG00000028539 ENSMUST00000150612 Artn protein_coding Interval_154937 chr8 25177419 25177765 + 0 NA intron (ENSMUSG00000065954.11, intron 5 of 8) protein_coding-intron (ENSMUSG00000065954.11, intron 4 of 12) -18359 ENSMUSG00000099142.1 ENSMUSG00000099142 ENSMUST00000184998 Mir8108 miRNA Interval_152135 chr7 129948457 129949321 + 0 NA Intergenic Intergenic -13276 ENSMUSG00000108504.1 ENSMUSG00000108504 ENSMUST00000206701 Gm4265 lincRNA Interval_162042 chr8 124662617 124663930 + 0 NA promoter-TSS (ENSMUSG00000031983.7) protein_coding-promoter-TSS (ENSMUSG00000031983.7) 96 ENSMUSG00000031983.7 ENSMUSG00000031983 ENSMUST00000034464 2310022B05Rik protein_coding Interval_120415 chr4 148458775 148459049 + 0 NA intron (ENSMUSG00000028991.15, intron 7 of 57) protein_coding-intron (ENSMUSG00000028991.15, intron 7 of 57) -14151 ENSMUSG00000047719.2 ENSMUSG00000047719 ENSMUST00000156686 Ubiad1 protein_coding Interval_103130 chr3 35753797 35754791 + 0 NA exon (ENSMUSG00000037400.17, exon 1 of 30) protein_coding-exon (ENSMUSG00000037400.17, exon 1 of 30) 18921 ENSMUSG00000064834.1 ENSMUSG00000064834 ENSMUST00000082900 Gm25696 snRNA Interval_8512 chr1 140428948 140430024 + 0 NA intron (ENSMUSG00000052726.16, intron 11 of 27) protein_coding-intron (ENSMUSG00000052726.16, intron 11 of 26) 162999 ENSMUSG00000102698.1 ENSMUSG00000102698 ENSMUST00000195546 Gm37777 TEC Interval_164173 chr9 32175846 32176470 + 0 NA promoter-TSS (ENSMUSG00000111382.1) processed_pseudogene-promoter-TSS (ENSMUSG00000111382.1) -990 ENSMUSG00000111382.1 ENSMUSG00000111382 ENSMUST00000213983 Gm47536 processed_pseudogene Interval_130 GL456378.1 40 1275 + 0 NA NA NA NA NA Interval_112126 chr4 34855667 34856391 + 0 NA intron (ENSMUSG00000039967.14, intron 1 of 7) protein_coding-intron (ENSMUSG00000039967.14, intron 1 of 7) 13044 ENSMUSG00000082367.1 ENSMUSG00000082367 ENSMUST00000122250 Gm12363 processed_pseudogene Interval_45643 chr13 56470389 56470677 + 0 NA intron (ENSMUSG00000021509.5, intron 7 of 7) protein_coding-intron (ENSMUSG00000021509.5, intron 7 of 7) 11713 ENSMUSG00000021538.3 ENSMUSG00000021538 ENSMUST00000022019 Il9 protein_coding Interval_4193 chr1 71543920 71544224 + 0 NA Intergenic Intergenic -13107 ENSMUSG00000026192.13 ENSMUSG00000026192 ENSMUST00000154855 Atic protein_coding Interval_3454 chr1 58474913 58475886 + 0 NA intron (ENSMUSG00000026037.14, intron 8 of 14) protein_coding-intron (ENSMUSG00000026037.14, intron 11 of 17) -8778 ENSMUSG00000094245.1 ENSMUSG00000094245 ENSMUST00000179823 Gm23966 snRNA Interval_2115 chr1 36522719 36523152 + 0 NA intron (ENSMUSG00000001138.13, intron 3 of 3) protein_coding-intron (ENSMUSG00000001138.13, intron 7 of 7) 4366 ENSMUSG00000001138.13 ENSMUSG00000001138 ENSMUST00000135100 Cnnm3 protein_coding Interval_91665 chr2 46443832 46444126 + 0 NA Intergenic Intergenic -1269 ENSMUSG00000086644.1 ENSMUSG00000086644 ENSMUST00000123911 Gm13470 lincRNA Interval_166710 chr9 62199497 62199812 + 0 NA Intergenic Intergenic -42016 ENSMUSG00000110826.1 ENSMUSG00000110826 ENSMUST00000217557 Gm47262 lincRNA Interval_102056 chr3 16231107 16231470 + 0 NA Intergenic Intergenic 48052 ENSMUSG00000047213.14 ENSMUSG00000047213 ENSMUST00000108346 Ythdf3 protein_coding Interval_122750 chr5 25085367 25085626 + 0 NA intron (ENSMUSG00000028944.14, intron 1 of 15) protein_coding-intron (ENSMUSG00000028944.14, intron 1 of 15) -15487 ENSMUSG00000043833.6 ENSMUSG00000043833 ENSMUST00000128569 2900005J15Rik processed_transcript Interval_142368 chr6 141075464 141076379 + 0 NA Intergenic Intergenic -62126 ENSMUSG00000107462.1 ENSMUSG00000107462 ENSMUST00000203682 Gm7384 processed_pseudogene Interval_50317 chr14 11817671 11817934 + 0 NA intron (ENSMUSG00000021745.14, intron 2 of 3) protein_coding-intron (ENSMUSG00000021745.14, intron 2 of 29) -49792 ENSMUSG00000114431.1 ENSMUSG00000114431 ENSMUST00000224051 Gm48601 TEC Interval_124046 chr5 37816997 37818644 + 0 NA Intergenic Intergenic 6762 ENSMUSG00000048450.10 ENSMUSG00000048450 ENSMUST00000183013 Msx1 protein_coding Interval_14156 chr10 28164449 28164701 + 0 NA intron (ENSMUSG00000019889.10, intron 1 of 2) protein_coding-intron (ENSMUSG00000019889.10, intron 1 of 31) 49546 ENSMUSG00000076377.1 ENSMUSG00000076377 ENSMUST00000102422 Gm22370 miRNA Interval_97469 chr2 136881998 136882257 + 0 NA intron (ENSMUSG00000115423.2, intron 2 of 2) protein_coding-intron (ENSMUSG00000027274.16, intron 2 of 5) 3552 ENSMUSG00000116563.1 ENSMUSG00000116563 ENSMUST00000231720 AL731706.2 protein_coding Interval_9211 chr1 155086501 155086737 + 0 NA Intergenic Intergenic -3353 ENSMUSG00000096950.2 ENSMUSG00000096950 ENSMUST00000181160 Gm9530 lincRNA Interval_123899 chr5 36375909 36376574 + 0 NA intron (ENSMUSG00000029093.14, intron 1 of 7) protein_coding-intron (ENSMUSG00000029093.14, intron 1 of 26) -10323 ENSMUSG00000029093.14 ENSMUSG00000029093 ENSMUST00000141508 Sorcs2 protein_coding Interval_131553 chr5 138101152 138101540 + 0 NA exon (ENSMUSG00000029729.12, exon 6 of 6) protein_coding-exon (ENSMUSG00000029729.12, exon 6 of 6) -5561 ENSMUSG00000106102.1 ENSMUSG00000106102 ENSMUST00000199837 Gm43493 processed_pseudogene Interval_160197 chr8 107076142 107076697 + 0 NA TTS (ENSMUSG00000031921.17) protein_coding-TTS (ENSMUSG00000031921.17) 5022 ENSMUSG00000031921.17 ENSMUSG00000031921 ENSMUST00000136178 Terf2 protein_coding Interval_27279 chr11 65197155 65197782 + 0 NA intron (ENSMUSG00000020542.18, intron 3 of 3) protein_coding-intron (ENSMUSG00000020542.18, intron 3 of 9) -15311 ENSMUSG00000020542.18 ENSMUSG00000020542 ENSMUST00000150823 Myocd protein_coding Interval_107173 chr3 104319596 104319812 + 0 NA Intergenic Intergenic 46909 ENSMUSG00000022187.2 ENSMUSG00000022187 ENSMUST00000056145 Gm5546 lincRNA Interval_80927 chr18 50253097 50253332 + 0 NA Intergenic Intergenic 18576 ENSMUSG00000118595.1 ENSMUSG00000118595 ENSMUST00000239331 AC118632.1 processed_pseudogene Interval_154627 chr8 22140495 22140980 + 0 NA intron (ENSMUSG00000031478.16, intron 10 of 14) protein_coding-intron (ENSMUSG00000031478.16, intron 11 of 15) 21757 ENSMUSG00000031478.16 ENSMUSG00000031478 ENSMUST00000151371 Nek3 protein_coding Interval_158324 chr8 81262575 81263338 + 0 NA Intergenic Intergenic 32107 ENSMUSG00000109928.1 ENSMUSG00000109928 ENSMUST00000210313 Gm45539 processed_pseudogene Interval_152087 chr7 129042654 129043386 + 0 NA Intergenic Intergenic 12056 ENSMUSG00000108785.1 ENSMUSG00000108785 ENSMUST00000206489 Gm4259 processed_pseudogene Interval_69449 chr16 93532157 93534015 + 0 NA exon (ENSMUSG00000116576.1, exon 1 of 1) lincRNA-exon (ENSMUSG00000116576.1, exon 1 of 1) 698 ENSMUSG00000116576.1 ENSMUSG00000116576 ENSMUST00000231728 Gm49725 lincRNA Interval_155352 chr8 32200077 32200667 + 0 NA intron (ENSMUSG00000062991.9, intron 1 of 12) protein_coding-intron (ENSMUSG00000062991.9, intron 1 of 8) 14243 ENSMUSG00000089370.1 ENSMUSG00000089370 ENSMUST00000158745 Gm22140 snRNA Interval_84528 chr19 12278681 12278861 + 0 NA Intergenic Intergenic -4213 ENSMUSG00000095640.4 ENSMUSG00000095640 ENSMUST00000208197 Olfr1434 protein_coding Interval_59908 chr15 61535428 61536361 + 0 NA exon (ENSMUSG00000116109.1, exon 2 of 2) lincRNA-exon (ENSMUSG00000116109.1, exon 2 of 2) 8289 ENSMUSG00000116109.1 ENSMUSG00000116109 ENSMUST00000229194 Gm49498 lincRNA Interval_61938 chr15 85356077 85357079 + 0 NA intron (ENSMUSG00000016541.10, intron 1 of 11) protein_coding-intron (ENSMUSG00000016541.10, intron 1 of 11) -5324 ENSMUSG00000064764.1 ENSMUSG00000064764 ENSMUST00000082830 Gm23517 snRNA Interval_45429 chr13 55115365 55115724 + 0 NA exon (ENSMUSG00000021481.11, exon 4 of 7) protein_coding-exon (ENSMUSG00000021481.11, exon 4 of 7) 12639 ENSMUSG00000114481.1 ENSMUSG00000114481 ENSMUST00000224848 Gm46415 processed_pseudogene Interval_145869 chr7 40874706 40875097 + 0 NA TTS (ENSMUSG00000100600.6) antisense-TTS (ENSMUSG00000100600.6) -1642 ENSMUSG00000101643.1 ENSMUSG00000101643 ENSMUST00000190685 Gm28307 lincRNA Interval_158354 chr8 82644425 82644754 + 0 NA Intergenic Intergenic 66822 ENSMUSG00000097984.1 ENSMUSG00000097984 ENSMUST00000183320 Gm8167 processed_pseudogene Interval_80821 chr18 47574628 47575048 + 0 NA intron (ENSMUSG00000118259.1, intron 1 of 5) lincRNA-intron (ENSMUSG00000118259.1, intron 1 of 5) 37103 ENSMUSG00000118259.1 ENSMUSG00000118259 ENSMUST00000236621 Gm5095 lincRNA Interval_94361 chr2 90495331 90495517 + 0 NA intron (ENSMUSG00000025314.16, intron 1 of 23) protein_coding-intron (ENSMUSG00000025314.16, intron 1 of 23) 16174 ENSMUSG00000085471.1 ENSMUSG00000085471 ENSMUST00000126953 4933423P22Rik antisense Interval_128415 chr5 113208832 113210503 + 0 NA intron (ENSMUSG00000051339.10, intron 1 of 12) protein_coding-intron (ENSMUSG00000051339.10, intron 1 of 12) -17242 ENSMUSG00000066964.2 ENSMUSG00000066964 ENSMUST00000086615 Tmem211 protein_coding Interval_48849 chr13 104034069 104034656 + 0 NA TTS (ENSMUSG00000021710.11) protein_coding-TTS (ENSMUSG00000021710.11) 211 ENSMUSG00000021710.11 ENSMUSG00000021710 ENSMUST00000224086 Nln protein_coding Interval_36462 chr12 45195357 45196600 + 0 NA Intergenic Intergenic 86971 ENSMUSG00000088852.1 ENSMUSG00000088852 ENSMUST00000158227 Gm24731 snoRNA Interval_132745 chr5 147549862 147550286 + 0 NA Intergenic Intergenic 96733 ENSMUSG00000029648.13 ENSMUSG00000029648 ENSMUST00000031652 Flt1 protein_coding Interval_11932 chr1 187282266 187283118 + 0 NA intron (ENSMUSG00000039210.16, intron 6 of 6) protein_coding-intron (ENSMUSG00000039210.16, intron 5 of 9) 46235 ENSMUSG00000104394.2 ENSMUSG00000104394 ENSMUST00000193542 Gm37254 TEC Interval_29265 chr11 82456848 82457173 + 0 NA Intergenic Intergenic 18753 ENSMUSG00000020701.12 ENSMUSG00000020701 ENSMUST00000202598 Tmem132e protein_coding Interval_64367 chr16 10873694 10874303 + 0 NA exon (ENSMUSG00000117309.1, exon 34 of 46) transcribed_unitary_pseudogene-exon (ENSMUSG00000117309.1, exon 34 of 46) 38930 ENSMUSG00000037991.9 ENSMUSG00000037991 ENSMUST00000181721 Rmi2 protein_coding Interval_83819 chr19 4864979 4865774 + 0 NA exon (ENSMUSG00000006457.4, exon 12 of 21) protein_coding-exon (ENSMUSG00000006457.4, exon 12 of 21) -1818 ENSMUSG00000006457.4 ENSMUSG00000006457 ENSMUST00000138811 Actn3 protein_coding Interval_118041 chr4 128573366 128574438 + 0 NA Intergenic Intergenic 21327 ENSMUSG00000028804.20 ENSMUSG00000028804 ENSMUST00000221199 Csmd2 protein_coding Interval_98666 chr2 154076259 154076513 + 0 NA Intergenic Intergenic 11028 ENSMUSG00000081013.1 ENSMUSG00000081013 ENSMUST00000119537 Gm14497 processed_pseudogene Interval_111263 chr4 16149924 16150267 + 0 NA intron (ENSMUSG00000041135.15, intron 4 of 11) protein_coding-intron (ENSMUSG00000041135.15, intron 4 of 10) 13548 ENSMUSG00000041135.15 ENSMUSG00000041135 ENSMUST00000183871 Ripk2 protein_coding Interval_170718 chr9 110278024 110278266 + 0 NA Intergenic Intergenic -3142 ENSMUSG00000098973.1 ENSMUSG00000098973 ENSMUST00000184437 Mir6236 miRNA Interval_55887 chr14 101791561 101791764 + 0 NA intron (ENSMUSG00000033060.16, intron 1 of 30) protein_coding-intron (ENSMUSG00000033060.16, intron 1 of 30) -48845 ENSMUSG00000033060.16 ENSMUSG00000033060 ENSMUST00000160038 Lmo7 protein_coding Interval_95750 chr2 115742993 115743848 + 0 NA intron (ENSMUSG00000040282.13, intron 10 of 10) protein_coding-intron (ENSMUSG00000040282.13, intron 10 of 10) 104695 ENSMUSG00000088606.1 ENSMUSG00000088606 ENSMUST00000157981 Mir1951 miRNA Interval_135515 chr6 39810402 39811352 + 0 NA promoter-TSS (ENSMUSG00000029918.9) protein_coding-promoter-TSS (ENSMUSG00000029918.9) -4835 ENSMUSG00000029918.9 ENSMUSG00000029918 ENSMUST00000139992 Mrps33 protein_coding Interval_154469 chr8 18462849 18463645 + 0 NA Intergenic Intergenic 49398 ENSMUSG00000077675.1 ENSMUSG00000077675 ENSMUST00000104487 Gm24469 snoRNA Interval_174558 chrX 157731657 157732213 + 0 NA intron (ENSMUSG00000041476.12, intron 2 of 2) protein_coding-intron (ENSMUSG00000041476.12, intron 4 of 5) 32962 ENSMUSG00000041476.12 ENSMUSG00000041476 ENSMUST00000126418 Smpx protein_coding Interval_109046 chr3 135446480 135446849 + 0 NA exon (ENSMUSG00000078578.9, exon 1 of 1) protein_coding-exon (ENSMUSG00000078578.9, exon 1 of 1) -7999 ENSMUSG00000097032.2 ENSMUSG00000097032 ENSMUST00000181619 4930539J05Rik antisense Interval_53081 chr14 54321388 54322281 + 0 NA Intergenic Intergenic 2489 ENSMUSG00000105294.1 ENSMUSG00000105294 ENSMUST00000196803 Gm43304 processed_pseudogene Interval_49541 chr13 112811986 112812382 + 0 NA intron (ENSMUSG00000021759.14, intron 1 of 5) protein_coding-intron (ENSMUSG00000021759.14, intron 1 of 5) 11321 ENSMUSG00000021759.14 ENSMUSG00000021759 ENSMUST00000070951 Plpp1 protein_coding Interval_134543 chr6 29449590 29450368 + 0 NA intron (ENSMUSG00000068699.12, intron 24 of 46) protein_coding-intron (ENSMUSG00000068699.12, intron 24 of 47) 16723 ENSMUSG00000068699.12 ENSMUSG00000068699 ENSMUST00000065090 Flnc protein_coding Interval_148654 chr7 83870306 83870619 + 0 NA Intergenic Intergenic 3685 ENSMUSG00000109552.1 ENSMUSG00000109552 ENSMUST00000208364 Gm44531 TEC Interval_80091 chr18 37475115 37475963 + 0 NA exon (ENSMUSG00000047033.2, exon 1 of 1) protein_coding-exon (ENSMUSG00000047033.2, exon 1 of 1) 1999 ENSMUSG00000047033.2 ENSMUSG00000047033 ENSMUST00000050034 Pcdhb15 protein_coding Interval_17074 chr10 71168902 71170029 + 0 NA exon (ENSMUSG00000112366.1, exon 8 of 8) lincRNA-exon (ENSMUSG00000112366.1, exon 8 of 8) 6537 ENSMUSG00000112748.1 ENSMUSG00000112748 ENSMUST00000217890 Gm6331 processed_pseudogene Interval_45115 chr13 52447795 52448448 + 0 NA Intergenic Intergenic 83158 ENSMUSG00000047842.7 ENSMUSG00000047842 ENSMUST00000057442 Diras2 protein_coding Interval_142738 chr6 145256198 145257115 + 0 NA Intergenic Intergenic 6127 ENSMUSG00000086013.1 ENSMUSG00000086013 ENSMUST00000139612 Gm15706 lincRNA Interval_153596 chr8 3605878 3607397 + 0 NA exon (ENSMUSG00000044433.16, exon 13 of 17) protein_coding-exon (ENSMUSG00000044433.16, exon 13 of 17) -8892 ENSMUSG00000084603.1 ENSMUSG00000084603 ENSMUST00000122654 Gm22204 misc_RNA Interval_75921 chr17 73072165 73072357 + 0 NA Intergenic Intergenic -43183 ENSMUSG00000117096.1 ENSMUSG00000117096 ENSMUST00000233236 Gm30420 lincRNA Interval_70796 chr17 14655054 14656064 + 0 NA Intergenic Intergenic 15307 ENSMUSG00000023885.9 ENSMUSG00000023885 ENSMUST00000232616 Thbs2 protein_coding Interval_131649 chr5 139061701 139062386 + 0 NA TTS (ENSMUSG00000025855.13) protein_coding-TTS (ENSMUSG00000025855.13) 66987 ENSMUSG00000075585.3 ENSMUSG00000075585 ENSMUST00000187923 6330403L08Rik antisense Interval_114535 chr4 82367672 82369212 + 0 NA intron (ENSMUSG00000008575.17, intron 3 of 4) protein_coding-intron (ENSMUSG00000008575.17, intron 3 of 11) -70968 ENSMUSG00000084595.1 ENSMUSG00000084595 ENSMUST00000122646 n-R5s188 rRNA Interval_84254 chr19 9039945 9041116 + 0 NA intron (ENSMUSG00000069833.13, intron 5 of 5) protein_coding-intron (ENSMUSG00000069833.13, intron 5 of 5) 47428 ENSMUSG00000024653.2 ENSMUSG00000024653 ENSMUST00000025554 Scgb1a1 protein_coding Interval_103848 chr3 53597537 53599743 + 0 NA intron (ENSMUSG00000037016.11, intron 2 of 23) protein_coding-intron (ENSMUSG00000037016.11, intron 2 of 23) 68688 ENSMUSG00000105840.1 ENSMUSG00000105840 ENSMUST00000198253 Gm6073 processed_pseudogene Interval_21001 chr10 123139829 123140034 + 0 NA intron (ENSMUSG00000020124.10, intron 8 of 21) protein_coding-intron (ENSMUSG00000020124.10, intron 7 of 20) 38753 ENSMUSG00000112879.1 ENSMUSG00000112879 ENSMUST00000219693 Gm47726 processed_pseudogene Interval_88639 chr2 8120394 8120973 + 0 NA Intergenic Intergenic 27182 ENSMUSG00000083269.1 ENSMUSG00000083269 ENSMUST00000118295 Gm13254 processed_pseudogene Interval_146398 chr7 45682435 45683291 + 0 NA intron (ENSMUSG00000040364.8, intron 3 of 3) protein_coding-intron (ENSMUSG00000040364.8, intron 3 of 3) -1566 ENSMUSG00000070564.15 ENSMUSG00000070564 ENSMUST00000183120 Ntn5 protein_coding Interval_91904 chr2 51161595 51161831 + 0 NA Intergenic Intergenic -12603 ENSMUSG00000017144.8 ENSMUSG00000017144 ENSMUST00000140864 Rnd3 protein_coding Interval_33440 chr11 116549839 116550195 + 0 NA promoter-TSS (ENSMUSG00000083314.1) processed_pseudogene-promoter-TSS (ENSMUSG00000083314.1) -401 ENSMUSG00000083314.1 ENSMUSG00000083314 ENSMUST00000119903 Gm11742 processed_pseudogene Interval_30282 chr11 92855205 92855449 + 0 NA Intergenic Intergenic -54970 ENSMUSG00000087810.1 ENSMUSG00000087810 ENSMUST00000157185 Gm25113 snoRNA Interval_32866 chr11 112554179 112554687 + 0 NA Intergenic Intergenic 156907 ENSMUSG00000041674.16 ENSMUSG00000041674 ENSMUST00000148724 BC006965 processed_transcript Interval_63212 chr15 99765340 99766635 + 0 NA promoter-TSS (ENSMUSG00000090406.1) antisense-promoter-TSS (ENSMUSG00000090406.1) -4 ENSMUSG00000090406.1 ENSMUSG00000090406 ENSMUST00000168951 Gm17058 antisense Interval_158313 chr8 81061719 81061986 + 0 NA TTS (ENSMUSG00000037982.16) antisense-TTS (ENSMUSG00000037982.16) 518 ENSMUSG00000109980.1 ENSMUSG00000109980 ENSMUST00000210771 Gm45538 lincRNA Interval_70108 chr17 5387472 5389006 + 0 NA promoter-TSS (ENSMUSG00000101133.1) antisense-promoter-TSS (ENSMUSG00000101133.1) -524 ENSMUSG00000101133.1 ENSMUSG00000101133 ENSMUST00000190732 Gm29050 antisense Interval_61596 chr15 82866000 82866897 + 0 NA intron (ENSMUSG00000041852.15, intron 1 of 1) protein_coding-intron (ENSMUSG00000041852.15, intron 1 of 4) -32632 ENSMUSG00000100199.1 ENSMUSG00000100199 ENSMUST00000186291 Gm20324 antisense Interval_31160 chr11 98533831 98534225 + 0 NA intron (ENSMUSG00000018168.8, intron 1 of 2) protein_coding-intron (ENSMUSG00000018168.8, intron 1 of 7) -21415 ENSMUSG00000017195.15 ENSMUSG00000017195 ENSMUST00000126236 Zpbp2 protein_coding Interval_57618 chr15 12868319 12868902 + 0 NA intron (ENSMUSG00000022191.16, intron 15 of 34) protein_coding-intron (ENSMUSG00000022191.16, intron 15 of 34) 26514 ENSMUSG00000104911.1 ENSMUSG00000104911 ENSMUST00000198820 Gm47288 miRNA Interval_42702 chr13 18186739 18187076 + 0 NA promoter-TSS (ENSMUSG00000009734.18) protein_coding-promoter-TSS (ENSMUSG00000009734.18) -86705 ENSMUSG00000113470.1 ENSMUSG00000113470 ENSMUST00000220795 4930448F12Rik lincRNA Interval_92012 chr2 52556046 52558090 + 0 NA promoter-TSS (ENSMUSG00000017412.15) protein_coding-promoter-TSS (ENSMUSG00000017412.15) 5099 ENSMUSG00000082132.1 ENSMUSG00000082132 ENSMUST00000119519 Gm13541 processed_pseudogene Interval_103767 chr3 52486378 52487331 + 0 NA Intergenic Intergenic -30110 ENSMUSG00000103965.1 ENSMUSG00000103965 ENSMUST00000195035 Gm30173 lincRNA Interval_163246 chr9 19512774 19513179 + 0 NA Intergenic Intergenic 19681 ENSMUSG00000052625.8 ENSMUSG00000052625 ENSMUST00000064582 Olfr851 protein_coding Interval_119423 chr4 137565019 137565259 + 0 NA intron (ENSMUSG00000028763.18, intron 88 of 96) protein_coding-intron (ENSMUSG00000028763.18, intron 88 of 96) 16965 ENSMUSG00000094035.3 ENSMUSG00000094035 ENSMUST00000238941 Ldlrad2 protein_coding Interval_148189 chr7 79709909 79710968 + 0 NA promoter-TSS (ENSMUSG00000039133.8) antisense-promoter-TSS (ENSMUSG00000039133.8) 67 ENSMUSG00000039133.8 ENSMUSG00000039133 ENSMUST00000197011 9330171B17Rik antisense Interval_9676 chr1 160952938 160953172 + 0 NA TTS (ENSMUSG00000040423.11) protein_coding-TTS (ENSMUSG00000040423.11) -25633 ENSMUSG00000026715.12 ENSMUSG00000026715 ENSMUST00000194455 Serpinc1 protein_coding Interval_141617 chr6 131375462 131376583 + 0 NA TTS (ENSMUSG00000030189.15) protein_coding-TTS (ENSMUSG00000030189.15) 2219 ENSMUSG00000030189.15 ENSMUSG00000030189 ENSMUST00000204481 Ybx3 protein_coding Interval_54333 chr14 67752977 67753475 + 0 NA exon (ENSMUSG00000044447.5, exon 52 of 52) protein_coding-exon (ENSMUSG00000044447.5, exon 52 of 52) 6956 ENSMUSG00000015812.8 ENSMUSG00000015812 ENSMUST00000223951 Gnrh1 protein_coding Interval_104720 chr3 69745725 69746148 + 0 NA promoter-TSS (ENSMUSG00000027787.14) protein_coding-promoter-TSS (ENSMUSG00000027787.14) 21700 ENSMUSG00000027787.14 ENSMUSG00000027787 ENSMUST00000150210 Nmd3 protein_coding Interval_129211 chr5 118214115 118214992 + 0 NA intron (ENSMUSG00000032850.16, intron 1 of 4) protein_coding-intron (ENSMUSG00000032850.16, intron 8 of 11) -3211 ENSMUSG00000089248.1 ENSMUSG00000089248 ENSMUST00000158623 Gm24050 misc_RNA Interval_80501 chr18 42981332 42982548 + 0 NA intron (ENSMUSG00000117792.1, intron 2 of 3) protein_coding-intron (ENSMUSG00000024500.20, intron 1 of 8) 46470 ENSMUSG00000084959.1 ENSMUSG00000084959 ENSMUST00000151215 4933407I08Rik antisense Interval_125703 chr5 73370956 73371222 + 0 NA Intergenic Intergenic -19560 ENSMUSG00000107272.1 ENSMUSG00000107272 ENSMUST00000202586 Gm34583 transcribed_processed_pseudogene Interval_172053 chr9 124081784 124082181 + 0 NA Intergenic Intergenic -19968 ENSMUSG00000049103.14 ENSMUSG00000049103 ENSMUST00000165984 Ccr2 protein_coding Interval_64942 chr16 17405263 17406382 + 0 NA promoter-TSS (ENSMUSG00000022765.10) protein_coding-promoter-TSS (ENSMUSG00000022765.10) -164 ENSMUSG00000022765.10 ENSMUSG00000022765 ENSMUST00000023449 Snap29 protein_coding Interval_156447 chr8 48274531 48275487 + 0 NA TTS (ENSMUSG00000031561.16) protein_coding-TTS (ENSMUSG00000031561.16) -4024 ENSMUSG00000110480.1 ENSMUSG00000110480 ENSMUST00000212653 Gm32842 processed_pseudogene Interval_108813 chr3 131782329 131782558 + 0 NA intron (ENSMUSG00000105331.1, intron 1 of 3) lincRNA-intron (ENSMUSG00000105331.1, intron 1 of 3) 22638 ENSMUSG00000105331.1 ENSMUSG00000105331 ENSMUST00000197726 Gm29865 lincRNA Interval_102746 chr3 30742609 30743214 + 0 NA Intergenic Intergenic -13311 ENSMUSG00000051860.13 ENSMUSG00000051860 ENSMUST00000192872 Samd7 protein_coding Interval_98009 chr2 146630466 146631675 + 0 NA Intergenic Intergenic 88139 ENSMUSG00000085796.1 ENSMUSG00000085796 ENSMUST00000147212 4933406D12Rik lincRNA Interval_14077 chr10 26609003 26609203 + 0 NA Intergenic Intergenic -1644 ENSMUSG00000111882.2 ENSMUSG00000111882 ENSMUST00000218590 Gm48864 unitary_pseudogene Interval_74242 chr17 47662759 47663677 + 0 NA intron (ENSMUSG00000090115.7, intron 1 of 1) protein_coding-intron (ENSMUSG00000090115.7, intron 2 of 6) -9502 ENSMUSG00000090115.7 ENSMUSG00000090115 ENSMUST00000131550 Usp49 protein_coding Interval_170163 chr9 105762218 105762457 + 0 NA intron (ENSMUSG00000043719.14, intron 11 of 36) protein_coding-intron (ENSMUSG00000043719.14, intron 11 of 36) 34552 ENSMUSG00000102877.1 ENSMUSG00000102877 ENSMUST00000195709 Gm38314 TEC Interval_51678 chr14 31307005 31307273 + 0 NA exon (ENSMUSG00000019027.8, exon 11 of 78) protein_coding-exon (ENSMUSG00000019027.8, exon 11 of 78) -16816 ENSMUSG00000115468.1 ENSMUSG00000115468 ENSMUST00000226148 Gm49217 lincRNA Interval_2363 chr1 38493202 38493553 + 0 NA intron (ENSMUSG00000037138.18, intron 5 of 22) protein_coding-intron (ENSMUSG00000037138.18, intron 5 of 7) 5858 ENSMUSG00000102984.1 ENSMUSG00000102984 ENSMUST00000195175 Gm34727 processed_pseudogene Interval_60354 chr15 73136721 73137694 + 0 NA intron (ENSMUSG00000036698.11, intron 3 of 4) protein_coding-intron (ENSMUSG00000036698.11, intron 3 of 18) 40640 ENSMUSG00000036698.11 ENSMUSG00000036698 ENSMUST00000230464 Ago2 protein_coding Interval_81906 chr18 65749109 65750392 + 0 NA exon (ENSMUSG00000046610.15, exon 14 of 15) protein_coding-exon (ENSMUSG00000046610.15, exon 14 of 15) -34360 ENSMUSG00000118208.1 ENSMUSG00000118208 ENSMUST00000237991 Gm50234 processed_pseudogene Interval_30433 chr11 94334541 94334721 + 0 NA TTS (ENSMUSG00000020864.13) protein_coding-TTS (ENSMUSG00000020864.13) 1178 ENSMUSG00000020864.13 ENSMUSG00000020864 ENSMUST00000124087 Ankrd40 protein_coding Interval_110831 chr4 8805905 8806107 + 0 NA intron (ENSMUSG00000041235.12, intron 5 of 37) protein_coding-intron (ENSMUSG00000041235.12, intron 5 of 37) -49225 ENSMUSG00000041235.12 ENSMUSG00000041235 ENSMUST00000222546 Chd7 protein_coding Interval_21411 chr10 128440448 128441837 + 0 NA TTS (ENSMUSG00000025373.14) protein_coding-TTS (ENSMUSG00000025373.14) 5228 ENSMUSG00000088151.1 ENSMUSG00000088151 ENSMUST00000157526 Gm26347 scaRNA Interval_132929 chr5 148792784 148793305 + 0 NA Intergenic Intergenic 15081 ENSMUSG00000085740.1 ENSMUSG00000085740 ENSMUST00000155504 4930505K14Rik lincRNA Interval_34172 chr11 121081263 121081505 + 0 NA promoter-TSS (ENSMUSG00000025165.12) protein_coding-promoter-TSS (ENSMUSG00000025165.12) -259 ENSMUSG00000025165.12 ENSMUSG00000025165 ENSMUST00000149917 Sectm1a protein_coding Interval_47522 chr13 86283759 86284043 + 0 NA Intergenic Intergenic 48074 ENSMUSG00000098152.1 ENSMUSG00000098152 ENSMUST00000182392 Gm27025 processed_pseudogene Interval_8217 chr1 136561760 136562107 + 0 NA Intergenic Intergenic 17544 ENSMUSG00000104509.1 ENSMUSG00000104509 ENSMUST00000193724 Gm33994 lincRNA Interval_149965 chr7 103864717 103865067 + 0 NA Intergenic Intergenic -11676 ENSMUSG00000052187.4 ENSMUSG00000052187 ENSMUST00000033229 Hbb-y protein_coding Interval_92004 chr2 52451541 52451709 + 0 NA intron (ENSMUSG00000017412.15, intron 11 of 13) protein_coding-intron (ENSMUSG00000017412.15, intron 11 of 13) 26613 ENSMUSG00000085315.7 ENSMUSG00000085315 ENSMUST00000143821 A430018G15Rik processed_transcript Interval_77781 chr18 3449540 3449972 + 0 NA Intergenic Intergenic 2942 ENSMUSG00000117370.1 ENSMUSG00000117370 ENSMUST00000235096 Gm6235 processed_pseudogene Interval_170455 chr9 108094079 108095832 + 0 NA promoter-TSS (ENSMUSG00000032590.14) protein_coding-promoter-TSS (ENSMUSG00000032590.14) -489 ENSMUSG00000032590.14 ENSMUSG00000032590 ENSMUST00000191985 Apeh protein_coding Interval_83943 chr19 5740332 5740573 + 0 NA promoter-TSS (ENSMUSG00000024940.11) protein_coding-promoter-TSS (ENSMUSG00000024940.11) -8739 ENSMUSG00000118125.1 ENSMUSG00000118125 ENSMUST00000160852 Gm50387 protein_coding Interval_75304 chr17 65785895 65786531 + 0 NA intron (ENSMUSG00000061950.17, intron 1 of 6) protein_coding-intron (ENSMUSG00000061950.17, intron 2 of 19) -13573 ENSMUSG00000056515.9 ENSMUSG00000056515 ENSMUST00000233258 Rab31 protein_coding Interval_16342 chr10 62349728 62350086 + 0 NA TTS (ENSMUSG00000085347.1) antisense-TTS (ENSMUSG00000085347.1) 9300 ENSMUSG00000085347.1 ENSMUSG00000085347 ENSMUST00000142968 Hk1os antisense Interval_42989 chr13 22389321 22389526 + 0 NA promoter-TSS (ENSMUSG00000101073.2) protein_coding-promoter-TSS (ENSMUSG00000101073.2) -950 ENSMUSG00000101073.2 ENSMUSG00000101073 ENSMUST00000074324 Vmn1r200 protein_coding Interval_156252 chr8 46559191 46560003 + 0 NA promoter-TSS (ENSMUSG00000031629.14) protein_coding-promoter-TSS (ENSMUSG00000031629.14) 7559 ENSMUSG00000031629.14 ENSMUSG00000031629 ENSMUST00000136724 Cenpu protein_coding Interval_125102 chr5 64490070 64490846 + 0 NA Intergenic Intergenic 13450 ENSMUSG00000105352.4 ENSMUSG00000105352 ENSMUST00000196829 C030018K13Rik lincRNA Interval_29516 chr11 84598589 84599716 + 0 NA Intergenic Intergenic 73492 ENSMUSG00000087211.7 ENSMUSG00000087211 ENSMUST00000128121 Lhx1os lincRNA Interval_41225 chr12 111943772 111946973 + 0 NA promoter-TSS (ENSMUSG00000113769.1) lincRNA-promoter-TSS (ENSMUSG00000113769.1) -1226 ENSMUSG00000113769.1 ENSMUSG00000113769 ENSMUST00000222845 5033406O09Rik lincRNA Interval_109940 chr3 152066417 152067544 + 0 NA Intergenic Intergenic 4821 ENSMUSG00000105035.1 ENSMUSG00000105035 ENSMUST00000197505 Gm9682 processed_pseudogene Interval_129793 chr5 122381870 122382628 + 0 NA TTS (ENSMUSG00000029464.10) protein_coding-TTS (ENSMUSG00000029464.10) 4841 ENSMUSG00000104916.1 ENSMUSG00000104916 ENSMUST00000196642 Gm42830 TEC Interval_24877 chr11 40704781 40705303 + 0 NA intron (ENSMUSG00000020330.16, intron 16 of 17) protein_coding-intron (ENSMUSG00000020330.16, intron 16 of 17) -19225 ENSMUSG00000042032.13 ENSMUSG00000042032 ENSMUST00000135617 Mat2b protein_coding Interval_50226 chr14 10569674 10569929 + 0 NA intron (ENSMUSG00000060579.13, intron 3 of 4) protein_coding-intron (ENSMUSG00000060579.13, intron 4 of 9) 91127 ENSMUSG00000065328.1 ENSMUSG00000065328 ENSMUST00000083394 Gm22053 snoRNA Interval_48304 chr13 97959412 97960020 + 0 NA intron (ENSMUSG00000021662.11, intron 14 of 27) protein_coding-intron (ENSMUSG00000021662.11, intron 22 of 35) 56701 ENSMUSG00000021662.11 ENSMUSG00000021662 ENSMUST00000224866 Arhgef28 protein_coding Interval_23675 chr11 24370787 24370990 + 0 NA Intergenic Intergenic -55358 ENSMUSG00000087085.1 ENSMUSG00000087085 ENSMUST00000153153 Gm12068 lincRNA Interval_126296 chr5 86214411 86215133 + 0 NA Intergenic Intergenic -16871 ENSMUSG00000029255.8 ENSMUSG00000029255 ENSMUST00000094654 Gnrhr protein_coding Interval_101738 chr3 9298455 9298824 + 0 NA Intergenic Intergenic 48037 ENSMUSG00000069114.8 ENSMUSG00000069114 ENSMUST00000155203 Zbtb10 protein_coding Interval_34884 chr12 12941368 12943977 + 0 NA promoter-TSS (ENSMUSG00000037169.15) protein_coding-promoter-TSS (ENSMUSG00000037169.15) -847 ENSMUSG00000037169.15 ENSMUSG00000037169 ENSMUST00000151534 Mycn protein_coding Interval_66333 chr16 33210552 33210983 + 0 NA intron (ENSMUSG00000022807.9, intron 5 of 12) protein_coding-intron (ENSMUSG00000022807.9, intron 5 of 12) 25696 ENSMUSG00000022807.9 ENSMUSG00000022807 ENSMUST00000231617 Osbpl11 protein_coding Interval_114340 chr4 73790257 73791382 + 0 NA promoter-TSS (ENSMUSG00000043003.14) protein_coding-promoter-TSS (ENSMUSG00000043003.14) 175 ENSMUSG00000043003.14 ENSMUSG00000043003 ENSMUST00000222414 Rasef protein_coding Interval_71208 chr17 21155532 21156016 + 0 NA Intergenic Intergenic 3212 ENSMUSG00000094582.1 ENSMUSG00000094582 ENSMUST00000096981 Gm7736 processed_pseudogene Interval_111549 chr4 22835400 22836242 + 0 NA Intergenic Intergenic 88690 ENSMUSG00000088809.1 ENSMUSG00000088809 ENSMUST00000158184 Gm24078 miRNA Interval_117272 chr4 121186156 121186532 + 0 NA intron (ENSMUSG00000049878.13, intron 1 of 5) protein_coding-intron (ENSMUSG00000049878.13, intron 3 of 7) 28740 ENSMUSG00000049878.13 ENSMUSG00000049878 ENSMUST00000222814 Rlf protein_coding Interval_41268 chr12 112285039 112285858 + 0 NA Intergenic Intergenic 64619 ENSMUSG00000103080.1 ENSMUSG00000103080 ENSMUST00000194990 Gm38123 TEC Interval_87697 chr19 55143634 55144733 + 0 NA Intergenic Intergenic -16980 ENSMUSG00000024978.11 ENSMUSG00000024978 ENSMUST00000236422 Gpam protein_coding Interval_162802 chr9 9231287 9232207 + 0 NA intron (ENSMUSG00000050730.17, intron 1 of 5) protein_coding-intron (ENSMUSG00000050730.17, intron 1 of 22) -4541 ENSMUSG00000085253.3 ENSMUSG00000085253 ENSMUST00000150263 Gm16833 antisense Interval_14521 chr10 34795633 34796195 + 0 NA Intergenic Intergenic -85494 ENSMUSG00000111042.1 ENSMUSG00000111042 ENSMUST00000215855 Gm18252 transcribed_processed_pseudogene Interval_48520 chr13 99734263 99734438 + 0 NA Intergenic Intergenic -41821 ENSMUSG00000077673.1 ENSMUSG00000077673 ENSMUST00000104485 Gm24471 snoRNA Interval_125637 chr5 72942637 72943106 + 0 NA intron (ENSMUSG00000036087.18, intron 3 of 5) protein_coding-intron (ENSMUSG00000036087.18, intron 2 of 8) -27929 ENSMUSG00000052154.4 ENSMUSG00000052154 ENSMUST00000063874 Gm9870 TEC Interval_155816 chr8 39246342 39247308 + 0 NA Intergenic Intergenic -35418 ENSMUSG00000109601.1 ENSMUSG00000109601 ENSMUST00000211201 Zfp148-ps1 processed_pseudogene Interval_99360 chr2 160180782 160181350 + 0 NA Intergenic Intergenic 153096 ENSMUSG00000074623.4 ENSMUSG00000074623 ENSMUST00000099127 Gm826 protein_coding Interval_53422 chr14 57332308 57332662 + 0 NA TTS (ENSMUSG00000077497.1) snoRNA-TTS (ENSMUSG00000077497.1) 1000 ENSMUSG00000077497.1 ENSMUSG00000077497 ENSMUST00000104309 Gm23593 snoRNA Interval_42999 chr13 22783991 22784875 + 0 NA Intergenic Intergenic -7033 ENSMUSG00000071493.5 ENSMUSG00000071493 ENSMUST00000124841 Vmn1r208 protein_coding Interval_5184 chr1 86331979 86332593 + 0 NA Intergenic Intergenic 4247 ENSMUSG00000101853.1 ENSMUSG00000101853 ENSMUST00000186141 Gm28627 processed_pseudogene Interval_135371 chr6 38685833 38687512 + 0 NA Intergenic Intergenic 22793 ENSMUSG00000079598.4 ENSMUSG00000079598 ENSMUST00000238216 Clec2l protein_coding Interval_5398 chr1 88482963 88483280 + 0 NA Intergenic Intergenic -20513 ENSMUSG00000099553.1 ENSMUSG00000099553 ENSMUST00000190783 Gm29538 lincRNA Interval_22453 chr11 10339667 10340345 + 0 NA Intergenic Intergenic 37076 ENSMUSG00000084045.1 ENSMUSG00000084045 ENSMUST00000118697 Gm11997 processed_pseudogene Interval_152400 chr7 132776702 132777189 + 0 NA promoter-TSS (ENSMUSG00000030956.15) protein_coding-promoter-TSS (ENSMUSG00000030956.15) 25805 ENSMUSG00000030956.15 ENSMUSG00000030956 ENSMUST00000148303 Fam53b protein_coding Interval_9375 chr1 156650532 156650984 + 0 NA Intergenic Intergenic 23577 ENSMUSG00000060519.11 ENSMUSG00000060519 ENSMUST00000190607 Tor3a protein_coding Interval_172241 chrX 11734703 11735928 + 0 NA Intergenic Intergenic -51191 ENSMUSG00000080811.1 ENSMUSG00000080811 ENSMUST00000117403 Gm14513 processed_pseudogene Interval_156477 chr8 48547225 48548649 + 0 NA intron (ENSMUSG00000031561.16, intron 2 of 26) protein_coding-intron (ENSMUSG00000031561.16, intron 2 of 28) 7376 ENSMUSG00000031561.16 ENSMUSG00000031561 ENSMUST00000211812 Tenm3 protein_coding Interval_47567 chr13 88929412 88930338 + 0 NA intron (ENSMUSG00000034488.14, intron 1 of 5) protein_coding-intron (ENSMUSG00000034488.14, intron 1 of 9) 108387 ENSMUSG00000034488.14 ENSMUSG00000034488 ENSMUST00000043111 Edil3 protein_coding Interval_53023 chr14 53590416 53591278 + 0 NA promoter-TSS (ENSMUSG00000094966.2) TR_V_gene-promoter-TSS (ENSMUSG00000094966.2) -10 ENSMUSG00000094966.2 ENSMUSG00000094966 ENSMUST00000103654 Trav9-2 TR_V_gene Interval_14057 chr10 26339901 26340753 + 0 NA intron (ENSMUSG00000039089.15, intron 6 of 8) protein_coding-intron (ENSMUSG00000039089.15, intron 6 of 21) 16530 ENSMUSG00000098898.1 ENSMUSG00000098898 ENSMUST00000183340 Gm27754 miRNA Interval_46173 chr13 62219178 62219748 + 0 NA promoter-TSS (ENSMUSG00000074867.4) protein_coding-promoter-TSS (ENSMUSG00000074867.4) -53298 ENSMUSG00000113081.1 ENSMUSG00000113081 ENSMUST00000221763 Gm3333 transcribed_processed_pseudogene Interval_155322 chr8 31235943 31238504 + 0 NA exon (ENSMUSG00000046152.16, exon 4 of 4) protein_coding-exon (ENSMUSG00000046152.16, exon 4 of 4) -21872 ENSMUSG00000083588.1 ENSMUSG00000083588 ENSMUST00000120464 Gm8051 processed_pseudogene Interval_162325 chr8 127118283 127118632 + 0 NA intron (ENSMUSG00000025812.18, intron 1 of 17) protein_coding-intron (ENSMUSG00000025812.18, intron 1 of 23) -52947 ENSMUSG00000025812.18 ENSMUSG00000025812 ENSMUST00000159940 Pard3 protein_coding Interval_160008 chr8 105714097 105714679 + 0 NA exon (ENSMUSG00000013150.15, exon 3 of 3) protein_coding-exon (ENSMUSG00000013150.15, exon 3 of 3) -6243 ENSMUSG00000013155.10 ENSMUSG00000013155 ENSMUST00000013299 Enkd1 protein_coding Interval_3734 chr1 62648045 62648861 + 0 NA Intergenic Intergenic 9335 ENSMUSG00000081950.1 ENSMUSG00000081950 ENSMUST00000119592 Gm11600 processed_pseudogene Interval_7387 chr1 130786575 130787298 + 0 NA Intergenic Intergenic -13966 ENSMUSG00000026415.11 ENSMUSG00000026415 ENSMUST00000027670 Fcamr protein_coding Interval_131046 chr5 134746761 134747212 + 0 NA promoter-TSS (ENSMUSG00000107318.1) antisense-promoter-TSS (ENSMUSG00000107318.1) -56 ENSMUSG00000107318.1 ENSMUSG00000107318 ENSMUST00000200700 Gm30003 antisense Interval_138637 chr6 90629322 90630249 + 0 NA intron (ENSMUSG00000030089.15, intron 4 of 10) protein_coding-intron (ENSMUSG00000030089.15, intron 3 of 9) 25060 ENSMUSG00000030089.15 ENSMUSG00000030089 ENSMUST00000032177 Slc41a3 protein_coding Interval_165698 chr9 51101476 51102197 + 0 NA exon (ENSMUSG00000032057.9, exon 1 of 6) protein_coding-exon (ENSMUSG00000032057.9, exon 1 of 6) 242 ENSMUSG00000032057.9 ENSMUSG00000032057 ENSMUST00000170947 4833427G06Rik protein_coding Interval_12960 chr10 8752148 8752416 + 0 NA intron (ENSMUSG00000015305.6, intron 1 of 3) protein_coding-intron (ENSMUSG00000015305.6, intron 9 of 19) 39041 ENSMUSG00000111215.1 ENSMUSG00000111215 ENSMUST00000213934 Gm48654 lincRNA Interval_108443 chr3 127250191 127250378 + 0 NA intron (ENSMUSG00000032826.19, intron 2 of 15) protein_coding-intron (ENSMUSG00000032826.19, intron 2 of 14) -6509 ENSMUSG00000105733.1 ENSMUSG00000105733 ENSMUST00000197913 Gm42973 TEC Interval_119613 chr4 138724766 138725692 + 0 NA promoter-TSS (ENSMUSG00000028750.12) protein_coding-promoter-TSS (ENSMUSG00000028750.12) -8 ENSMUSG00000043621.13 ENSMUSG00000043621 ENSMUST00000135156 Ubxn10 protein_coding Interval_167199 chr9 66111273 66111691 + 0 NA intron (ENSMUSG00000032382.14, intron 1 of 6) protein_coding-intron (ENSMUSG00000032382.14, intron 1 of 14) -5758 ENSMUSG00000032382.14 ENSMUSG00000032382 ENSMUST00000145449 Snx1 protein_coding Interval_62194 chr15 88721344 88722113 + 0 NA intron (ENSMUSG00000022387.17, intron 2 of 12) protein_coding-intron (ENSMUSG00000022387.17, intron 2 of 7) -2573 ENSMUSG00000022387.17 ENSMUSG00000022387 ENSMUST00000139515 Brd1 protein_coding Interval_70274 chr17 7927958 7929821 + 0 NA intron (ENSMUSG00000033450.8, intron 5 of 9) protein_coding-intron (ENSMUSG00000033450.8, intron 5 of 9) 1954 ENSMUSG00000033450.8 ENSMUSG00000033450 ENSMUST00000226153 Tagap protein_coding Interval_53547 chr14 58914256 58914470 + 0 NA intron (ENSMUSG00000114486.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000114486.1, intron 1 of 2) 2259 ENSMUSG00000114486.1 ENSMUSG00000114486 ENSMUST00000224187 Gm48447 lincRNA Interval_143695 chr7 15689060 15689265 + 0 NA Intergenic Intergenic -2488 ENSMUSG00000093420.1 ENSMUSG00000093420 ENSMUST00000176649 Obox4-ps33 unprocessed_pseudogene Interval_112541 chr4 42987459 42988907 + 0 NA intron (ENSMUSG00000028452.7, intron 1 of 1) protein_coding-intron (ENSMUSG00000028452.7, intron 7 of 16) -2362 ENSMUSG00000028452.7 ENSMUSG00000028452 ENSMUST00000148182 Vcp protein_coding Interval_22583 chr11 11932049 11933231 + 0 NA TTS (ENSMUSG00000020176.17) protein_coding-TTS (ENSMUSG00000020176.17) -18892 ENSMUSG00000087990.2 ENSMUSG00000087990 ENSMUST00000157365 Gm25058 scaRNA Interval_128094 chr5 110828000 110828270 + 0 NA TTS (ENSMUSG00000043510.12) protein_coding-TTS (ENSMUSG00000043510.12) 11440 ENSMUSG00000043510.12 ENSMUSG00000043510 ENSMUST00000122921 Hscb protein_coding Interval_70570 chr17 12076918 12077129 + 0 NA Intergenic Intergenic -42306 ENSMUSG00000023827.8 ENSMUSG00000023827 ENSMUST00000167905 Agpat4 protein_coding Interval_151212 chr7 119731085 119731768 + 0 NA intron (ENSMUSG00000109233.1, intron 1 of 3) lincRNA-intron (ENSMUSG00000109233.1, intron 1 of 3) 4334 ENSMUSG00000109233.1 ENSMUSG00000109233 ENSMUST00000208774 Gm44866 lincRNA Interval_58721 chr15 37328405 37329226 + 0 NA intron (ENSMUSG00000022286.16, intron 2 of 8) protein_coding-intron (ENSMUSG00000022286.16, intron 9 of 15) 3994 ENSMUSG00000089811.2 ENSMUSG00000089811 ENSMUST00000159341 Gm16138 processed_pseudogene Interval_68598 chr16 80405775 80406979 + 0 NA Intergenic Intergenic 269025 ENSMUSG00000088476.1 ENSMUSG00000088476 ENSMUST00000157851 Gm23083 snoRNA Interval_102184 chr3 19264945 19265165 + 0 NA promoter-TSS (ENSMUSG00000069094.12) protein_coding-promoter-TSS (ENSMUSG00000069094.12) 37275 ENSMUSG00000087108.1 ENSMUSG00000087108 ENSMUST00000141455 Gm16093 antisense Interval_158222 chr8 80031626 80032895 + 0 NA intron (ENSMUSG00000064325.4, intron 4 of 12) protein_coding-intron (ENSMUSG00000064325.4, intron 4 of 12) -41911 ENSMUSG00000064325.4 ENSMUSG00000064325 ENSMUST00000079038 Hhip protein_coding Interval_65704 chr16 25746731 25747859 + 0 NA intron (ENSMUSG00000022510.14, intron 1 of 13) protein_coding-intron (ENSMUSG00000022510.14, intron 1 of 12) 20599 ENSMUSG00000098103.1 ENSMUSG00000098103 ENSMUST00000182783 Gm27005 processed_pseudogene Interval_152619 chr7 135403583 135403845 + 0 NA Intergenic Intergenic -6653 ENSMUSG00000048377.7 ENSMUSG00000048377 ENSMUST00000238917 Foxi2 protein_coding Interval_90348 chr2 29909930 29911390 + 0 NA intron (ENSMUSG00000026790.19, intron 8 of 19) protein_coding-intron (ENSMUSG00000026790.19, intron 8 of 16) 20862 ENSMUSG00000026790.19 ENSMUSG00000026790 ENSMUST00000152026 Odf2 protein_coding Interval_88741 chr2 10142618 10143872 + 0 NA Intergenic Intergenic -10326 ENSMUSG00000025780.7 ENSMUSG00000025780 ENSMUST00000026886 Itih5 protein_coding Interval_45886 chr13 58796613 58797881 + 0 NA exon (ENSMUSG00000114231.1, exon 1 of 4) lincRNA-exon (ENSMUSG00000114231.1, exon 1 of 4) 201 ENSMUSG00000114231.1 ENSMUSG00000114231 ENSMUST00000223670 Gm40968 lincRNA Interval_95547 chr2 112159810 112161039 + 0 NA Intergenic Intergenic 6052 ENSMUSG00000049758.7 ENSMUSG00000049758 ENSMUST00000058176 Olfr1318 protein_coding Interval_36976 chr12 55835957 55837061 + 0 NA exon (ENSMUSG00000012076.8, exon 1 of 10) protein_coding-exon (ENSMUSG00000012076.8, exon 1 of 10) 105 ENSMUSG00000012076.8 ENSMUSG00000012076 ENSMUST00000219575 Brms1l protein_coding Interval_32138 chr11 105495175 105495807 + 0 NA Intergenic Intergenic 61046 ENSMUSG00000086089.1 ENSMUSG00000086089 ENSMUST00000155987 Gm11640 antisense Interval_115200 chr4 94383078 94383339 + 0 NA intron (ENSMUSG00000085931.1, intron 1 of 5) lincRNA-intron (ENSMUSG00000085931.1, intron 1 of 5) -12450 ENSMUSG00000081508.1 ENSMUSG00000081508 ENSMUST00000120387 Gm12654 processed_pseudogene Interval_173876 chrX 106728838 106729216 + 0 NA Intergenic Intergenic -26306 ENSMUSG00000083063.1 ENSMUSG00000083063 ENSMUST00000117216 Gm14882 processed_pseudogene Interval_101128 chr2 178205240 178206030 + 0 NA intron (ENSMUSG00000027525.18, intron 1 of 12) protein_coding-intron (ENSMUSG00000027525.18, intron 1 of 12) -121921 ENSMUSG00000027525.18 ENSMUSG00000027525 ENSMUST00000133267 Phactr3 protein_coding Interval_15880 chr10 58692649 58693494 + 0 NA Intergenic Intergenic -3674 ENSMUSG00000091526.2 ENSMUSG00000091526 ENSMUST00000167536 BB019430 lincRNA Interval_99570 chr2 163281122 163281375 + 0 NA intron (ENSMUSG00000074607.11, intron 3 of 8) protein_coding-intron (ENSMUSG00000074607.11, intron 3 of 8) 55794 ENSMUSG00000074607.11 ENSMUSG00000074607 ENSMUST00000148599 Tox2 protein_coding Interval_14873 chr10 40683010 40684311 + 0 NA exon (ENSMUSG00000045555.3, exon 1 of 5) protein_coding-exon (ENSMUSG00000045555.3, exon 1 of 5) 378 ENSMUSG00000045555.3 ENSMUSG00000045555 ENSMUST00000058747 Mettl24 protein_coding Interval_161975 chr8 124216589 124218122 + 0 NA intron (ENSMUSG00000092329.1, intron 1 of 15) protein_coding-intron (ENSMUSG00000092329.1, intron 1 of 15) 57282 ENSMUSG00000110482.1 ENSMUSG00000110482 ENSMUST00000212467 Gm3889 processed_pseudogene Interval_2081 chr1 36288699 36289020 + 0 NA Intergenic Intergenic -14180 ENSMUSG00000047180.8 ENSMUSG00000047180 ENSMUST00000188666 Neurl3 protein_coding Interval_154624 chr8 22132165 22132417 + 0 NA promoter-TSS (ENSMUSG00000031478.16) protein_coding-promoter-TSS (ENSMUSG00000031478.16) -24398 ENSMUSG00000037738.11 ENSMUSG00000037738 ENSMUST00000213644 Nek5 protein_coding Interval_34236 chr11 121511783 121512466 + 0 NA exon (ENSMUSG00000039238.6, exon 3 of 3) protein_coding-exon (ENSMUSG00000039238.6, exon 3 of 3) 7209 ENSMUSG00000039238.6 ENSMUSG00000039238 ENSMUST00000092298 Zfp750 protein_coding Interval_137510 chr6 72822562 72822797 + 0 NA Intergenic Intergenic -70765 ENSMUSG00000104501.1 ENSMUSG00000104501 ENSMUST00000193564 Gm37736 TEC Interval_74901 chr17 57180128 57181146 + 0 NA Intergenic Intergenic 13540 ENSMUSG00000005824.7 ENSMUSG00000005824 ENSMUST00000005976 Tnfsf14 protein_coding Interval_9518 chr1 158343414 158344221 + 0 NA intron (ENSMUSG00000004031.13, intron 2 of 7) protein_coding-intron (ENSMUSG00000004031.13, intron 1 of 7) 12412 ENSMUSG00000004031.13 ENSMUSG00000004031 ENSMUST00000192709 Brinp2 protein_coding Interval_110046 chr3 152744059 152744887 + 0 NA exon (ENSMUSG00000039047.17, exon 8 of 12) protein_coding-exon (ENSMUSG00000039047.17, exon 8 of 12) 30350 ENSMUSG00000039047.17 ENSMUSG00000039047 ENSMUST00000160651 Pigk protein_coding Interval_92888 chr2 68209580 68210298 + 0 NA TTS (ENSMUSG00000027030.15) protein_coding-TTS (ENSMUSG00000027030.15) 128148 ENSMUSG00000081257.1 ENSMUSG00000081257 ENSMUST00000117875 Gm13607 processed_pseudogene Interval_35063 chr12 16990401 16990607 + 0 NA intron (ENSMUSG00000045679.14, intron 5 of 5) protein_coding-intron (ENSMUSG00000045679.14, intron 6 of 6) 9563 ENSMUSG00000045679.14 ENSMUSG00000045679 ENSMUST00000137960 Pqlc3 protein_coding Interval_25794 chr11 51763215 51764425 + 0 NA promoter-TSS (ENSMUSG00000036391.16) protein_coding-promoter-TSS (ENSMUSG00000036391.16) 126 ENSMUSG00000020386.5 ENSMUSG00000020386 ENSMUST00000136363 Sar1b protein_coding Interval_29022 chr11 79943140 79943973 + 0 NA intron (ENSMUSG00000035575.11, intron 13 of 19) protein_coding-intron (ENSMUSG00000035575.11, intron 13 of 18) 18811 ENSMUSG00000035575.11 ENSMUSG00000035575 ENSMUST00000146127 Utp6 protein_coding Interval_58049 chr15 27457054 27457698 + 0 NA Intergenic Intergenic 6073 ENSMUSG00000115138.1 ENSMUSG00000115138 ENSMUST00000227384 Gm36899 lincRNA Interval_48002 chr13 95019903 95020155 + 0 NA intron (ENSMUSG00000042015.17, intron 13 of 13) protein_coding-intron (ENSMUSG00000042015.17, intron 12 of 12) 2445 ENSMUSG00000042015.17 ENSMUSG00000042015 ENSMUST00000223422 Wdr41 protein_coding Interval_80391 chr18 41464409 41465395 + 0 NA Intergenic Intergenic 12979 ENSMUSG00000118299.1 ENSMUSG00000118299 ENSMUST00000235734 Gm50408 processed_pseudogene Interval_96349 chr2 121866280 121867747 + 0 NA promoter-TSS (ENSMUSG00000060227.15) protein_coding-promoter-TSS (ENSMUSG00000060227.15) -296 ENSMUSG00000086913.1 ENSMUSG00000086913 ENSMUST00000131514 Gm14019 antisense Interval_126073 chr5 77228980 77229405 + 0 NA Intergenic Intergenic 1814 ENSMUSG00000107034.1 ENSMUSG00000107034 ENSMUST00000201959 Gm19060 processed_pseudogene Interval_144890 chr7 28784505 28785338 + 0 NA promoter-TSS (ENSMUSG00000015149.14) protein_coding-promoter-TSS (ENSMUSG00000015149.14) -4048 ENSMUSG00000051735.7 ENSMUSG00000051735 ENSMUST00000207345 Rinl protein_coding Interval_41946 chr13 5089901 5090105 + 0 NA Intergenic Intergenic 99931 ENSMUSG00000077473.1 ENSMUSG00000077473 ENSMUST00000104285 Gm24790 snoRNA Interval_42360 chr13 12340198 12341175 + 0 NA promoter-TSS (ENSMUSG00000052374.16) protein_coding-promoter-TSS (ENSMUSG00000052374.16) -37472 ENSMUSG00000094185.2 ENSMUSG00000094185 ENSMUST00000180224 Gm5445 processed_pseudogene Interval_51196 chr14 24762410 24764326 + 0 NA intron (ENSMUSG00000089887.2, intron 3 of 5) lincRNA-intron (ENSMUSG00000089887.2, intron 3 of 5) -70267 ENSMUSG00000114965.1 ENSMUSG00000114965 ENSMUST00000223735 Gm47906 lincRNA Interval_4547 chr1 74934833 74935844 + 0 NA intron (ENSMUSG00000047021.14, intron 1 of 10) protein_coding-intron (ENSMUSG00000047021.14, intron 1 of 32) 256 ENSMUSG00000047021.14 ENSMUSG00000047021 ENSMUST00000130489 Cfap65 protein_coding Interval_149793 chr7 101541069 101541897 + 0 NA Intergenic Intergenic -3153 ENSMUSG00000110301.1 ENSMUSG00000110301 ENSMUST00000209330 Gm35363 lincRNA Interval_133334 chr6 3395734 3397138 + 0 NA intron (ENSMUSG00000047735.14, intron 1 of 1) protein_coding-intron (ENSMUSG00000047735.14, intron 1 of 1) -11430 ENSMUSG00000047735.14 ENSMUSG00000047735 ENSMUST00000201638 Samd9l protein_coding Interval_168397 chr9 80022495 80023080 + 0 NA Intergenic Intergenic -14642 ENSMUSG00000088908.1 ENSMUSG00000088908 ENSMUST00000158283 Gm25433 misc_RNA Interval_28161 chr11 73324222 73325034 + 0 NA promoter-TSS (ENSMUSG00000020774.9) protein_coding-promoter-TSS (ENSMUSG00000020774.9) 4968 ENSMUSG00000020774.9 ENSMUSG00000020774 ENSMUST00000141898 Aspa protein_coding Interval_39563 chr12 90731123 90731374 + 0 NA intron (ENSMUSG00000007682.6, intron 1 of 1) protein_coding-intron (ENSMUSG00000007682.6, intron 1 of 1) -6971 ENSMUSG00000097157.2 ENSMUSG00000097157 ENSMUST00000220857 Gm26512 bidirectional_promoter_lncRNA Interval_53830 chr14 62389958 62390278 + 0 NA Intergenic Intergenic 57993 ENSMUSG00000021932.13 ENSMUSG00000021932 ENSMUST00000156608 Rnaseh2b protein_coding Interval_57579 chr15 12517537 12518858 + 0 NA intron (ENSMUSG00000022197.16, intron 3 of 4) protein_coding-intron (ENSMUSG00000022197.16, intron 1 of 23) 54333 ENSMUSG00000095516.1 ENSMUSG00000095516 ENSMUST00000179085 Gm24135 miRNA Interval_105684 chr3 88561999 88562981 + 0 NA intron (ENSMUSG00000008604.11, intron 5 of 5) protein_coding-intron (ENSMUSG00000008604.11, intron 5 of 10) -1417 ENSMUSG00000008604.11 ENSMUSG00000008604 ENSMUST00000195498 Ubqln4 protein_coding Interval_136028 chr6 50033348 50033762 + 0 NA Intergenic Intergenic -17631 ENSMUSG00000108071.1 ENSMUSG00000108071 ENSMUST00000204812 Gm3455 lincRNA Interval_52238 chr14 40947342 40948219 + 0 NA intron (ENSMUSG00000037824.6, intron 1 of 8) protein_coding-intron (ENSMUSG00000037824.6, intron 1 of 8) -13464 ENSMUSG00000037824.6 ENSMUSG00000037824 ENSMUST00000224349 Tspan14 protein_coding Interval_76965 chr17 85223838 85224404 + 0 NA intron (ENSMUSG00000071037.6, intron 3 of 10) protein_coding-intron (ENSMUSG00000071037.6, intron 3 of 10) 133515 ENSMUSG00000071037.6 ENSMUSG00000071037 ENSMUST00000234501 Camkmt protein_coding Interval_76797 chr17 84134274 84134594 + 0 NA TTS (ENSMUSG00000117485.1) lincRNA-TTS (ENSMUSG00000117485.1) 5407 ENSMUSG00000117485.1 ENSMUSG00000117485 ENSMUST00000234394 Gm19696 lincRNA Interval_45011 chr13 51413470 51413757 + 0 NA intron (ENSMUSG00000067586.4, intron 1 of 1) protein_coding-intron (ENSMUSG00000067586.4, intron 1 of 1) 4974 ENSMUSG00000067586.4 ENSMUSG00000067586 ENSMUST00000087978 S1pr3 protein_coding Interval_93544 chr2 73947534 73947912 + 0 NA Intergenic Intergenic 12946 ENSMUSG00000083072.2 ENSMUSG00000083072 ENSMUST00000119237 Gm13668 processed_pseudogene Interval_110690 chr4 6455844 6456461 + 0 NA Intergenic Intergenic -2056 ENSMUSG00000028245.15 ENSMUSG00000028245 ENSMUST00000124656 Nsmaf protein_coding Interval_112707 chr4 44269046 44269421 + 0 NA Intergenic Intergenic -34335 ENSMUSG00000035683.13 ENSMUSG00000035683 ENSMUST00000137759 Melk protein_coding Interval_82075 chr18 67562525 67562785 + 0 NA exon (ENSMUSG00000091695.2, exon 1 of 1) processed_pseudogene-exon (ENSMUSG00000091695.2, exon 1 of 1) 261 ENSMUSG00000091695.2 ENSMUSG00000091695 ENSMUST00000163749 Gm17669 processed_pseudogene Interval_37344 chr12 65251466 65252005 + 0 NA promoter-TSS (ENSMUSG00000113442.1) processed_pseudogene-promoter-TSS (ENSMUSG00000113442.1) 25 ENSMUSG00000113442.1 ENSMUSG00000113442 ENSMUST00000222221 Gm47973 processed_pseudogene Interval_38723 chr12 81607863 81608478 + 0 NA Intergenic Intergenic -14221 ENSMUSG00000002679.14 ENSMUSG00000002679 ENSMUST00000159187 Med6 protein_coding Interval_26709 chr11 59879681 59880516 + 0 NA exon (ENSMUSG00000032615.14, exon 5 of 5) protein_coding-exon (ENSMUSG00000032615.14, exon 5 of 5) -18276 ENSMUSG00000084766.1 ENSMUSG00000084766 ENSMUST00000143391 Gm12714 lincRNA Interval_76499 chr17 80608266 80608499 + 0 NA intron (ENSMUSG00000024242.15, intron 9 of 18) protein_coding-intron (ENSMUSG00000024242.15, intron 24 of 33) 16604 ENSMUSG00000024242.15 ENSMUSG00000024242 ENSMUST00000234486 Map4k3 protein_coding Interval_160821 chr8 112803172 112803407 + 0 NA intron (ENSMUSG00000031772.17, intron 13 of 20) protein_coding-intron (ENSMUSG00000031772.17, intron 13 of 23) 29635 ENSMUSG00000031772.17 ENSMUSG00000031772 ENSMUST00000140753 Cntnap4 protein_coding Interval_162464 chr8 129123837 129124783 + 0 NA intron (ENSMUSG00000056018.14, intron 2 of 11) protein_coding-intron (ENSMUSG00000056018.14, intron 5 of 14) 7351 ENSMUSG00000078840.1 ENSMUSG00000078840 ENSMUST00000108743 Gm10999 protein_coding Interval_98938 chr2 156145403 156145853 + 0 NA exon (ENSMUSG00000067847.13, exon 3 of 3) protein_coding-exon (ENSMUSG00000067847.13, exon 3 of 3) 1388 ENSMUSG00000067847.13 ENSMUSG00000067847 ENSMUST00000119950 Romo1 protein_coding Interval_149822 chr7 101830578 101830802 + 0 NA promoter-TSS (ENSMUSG00000032737.13) protein_coding-promoter-TSS (ENSMUSG00000032737.13) 5913 ENSMUSG00000032737.13 ENSMUSG00000032737 ENSMUST00000209481 Inppl1 protein_coding Interval_66218 chr16 32378731 32379323 + 0 NA intron (ENSMUSG00000053774.9, intron 7 of 9) protein_coding-intron (ENSMUSG00000053774.9, intron 8 of 10) -21479 ENSMUSG00000079625.2 ENSMUSG00000079625 ENSMUST00000115149 Tm4sf19 protein_coding Interval_87650 chr19 54005767 54006011 + 0 NA intron (ENSMUSG00000024976.14, intron 2 of 3) protein_coding-intron (ENSMUSG00000024976.14, intron 3 of 8) -4482 ENSMUSG00000117981.1 ENSMUSG00000117981 ENSMUST00000237905 4930484I04Rik antisense Interval_121469 chr4 156006543 156006760 + 0 NA intron (ENSMUSG00000029076.14, intron 5 of 7) protein_coding-intron (ENSMUSG00000029076.14, intron 4 of 6) -1859 ENSMUSG00000029076.14 ENSMUSG00000029076 ENSMUST00000149971 Sdf4 protein_coding Interval_104661 chr3 69205453 69205805 + 0 NA Intergenic Intergenic -16790 ENSMUSG00000098207.1 ENSMUSG00000098207 ENSMUST00000183126 Arl14 protein_coding Interval_172566 chrX 36824590 36824811 + 0 NA intron (ENSMUSG00000006423.15, intron 6 of 6) protein_coding-intron (ENSMUSG00000006423.15, intron 6 of 6) 9929 ENSMUSG00000084990.1 ENSMUSG00000084990 ENSMUST00000154993 Gm14549 antisense Interval_14575 chr10 36275874 36276855 + 0 NA Intergenic Intergenic -115228 ENSMUSG00000110731.1 ENSMUSG00000110731 ENSMUST00000214163 Gm47049 lincRNA Interval_22296 chr11 8589174 8590084 + 0 NA intron (ENSMUSG00000020422.14, intron 3 of 30) protein_coding-intron (ENSMUSG00000020422.14, intron 3 of 30) 75052 ENSMUSG00000020422.14 ENSMUSG00000020422 ENSMUST00000134823 Tns3 protein_coding Interval_61312 chr15 80761051 80761448 + 0 NA intron (ENSMUSG00000047888.10, intron 3 of 24) protein_coding-intron (ENSMUSG00000047888.10, intron 3 of 24) 48978 ENSMUSG00000116480.1 ENSMUSG00000116480 ENSMUST00000230620 Gm49512 sense_intronic Interval_117453 chr4 123787281 123788484 + 0 NA promoter-TSS (ENSMUSG00000043333.12) protein_coding-promoter-TSS (ENSMUSG00000043333.12) -10323 ENSMUSG00000043333.12 ENSMUSG00000043333 ENSMUST00000148797 Rhbdl2 protein_coding Interval_119382 chr4 137367373 137368185 + 0 NA Intergenic Intergenic -10059 ENSMUSG00000006699.17 ENSMUSG00000006699 ENSMUST00000030417 Cdc42 protein_coding Interval_153027 chr7 140962650 140963636 + 0 NA Intergenic Intergenic -4078 ENSMUSG00000025491.14 ENSMUSG00000025491 ENSMUST00000026564 Ifitm1 protein_coding Interval_152903 chr7 139609608 139609812 + 0 NA intron (ENSMUSG00000049571.18, intron 5 of 13) protein_coding-intron (ENSMUSG00000049571.18, intron 6 of 14) -3052 ENSMUSG00000049571.18 ENSMUSG00000049571 ENSMUST00000138129 Cfap46 protein_coding Interval_67317 chr16 45995993 45996583 + 0 NA intron (ENSMUSG00000087141.1, intron 1 of 3) protein_coding-intron (ENSMUSG00000087141.1, intron 1 of 3) 13930 ENSMUSG00000087141.1 ENSMUSG00000087141 ENSMUST00000130481 Plcxd2 protein_coding Interval_62513 chr15 93674477 93674667 + 0 NA Intergenic Intergenic 5077 ENSMUSG00000115993.1 ENSMUSG00000115993 ENSMUST00000231103 Zfp42-ps1 processed_pseudogene Interval_59495 chr15 54571070 54572174 + 0 NA exon (ENSMUSG00000024479.3, exon 1 of 4) protein_coding-exon (ENSMUSG00000024479.3, exon 1 of 4) 430 ENSMUSG00000024479.3 ENSMUSG00000024479 ENSMUST00000025356 Mal2 protein_coding Interval_7373 chr1 130690102 130690563 + 0 NA TTS (ENSMUSG00000026409.14) protein_coding-TTS (ENSMUSG00000026409.14) -6261 ENSMUSG00000100257.1 ENSMUSG00000100257 ENSMUST00000189393 C4bp-ps1 unprocessed_pseudogene Interval_49292 chr13 110346932 110347187 + 0 NA Intergenic Intergenic 10140 ENSMUSG00000046006.6 ENSMUSG00000046006 ENSMUST00000224534 Gapt protein_coding Interval_47512 chr13 86046201 86047183 + 0 NA promoter-TSS (ENSMUSG00000017778.14) protein_coding-promoter-TSS (ENSMUSG00000017778.14) -345 ENSMUSG00000017778.14 ENSMUSG00000017778 ENSMUST00000017922 Cox7c protein_coding Interval_93012 chr2 69584787 69588123 + 0 NA promoter-TSS (ENSMUSG00000027070.14) protein_coding-promoter-TSS (ENSMUSG00000027070.14) -60775 ENSMUSG00000063145.10 ENSMUSG00000063145 ENSMUST00000127806 Bbs5 protein_coding Interval_171374 chr9 117156019 117157527 + 0 NA intron (ENSMUSG00000039607.17, intron 1 of 13) protein_coding-intron (ENSMUSG00000039607.17, intron 1 of 12) 91246 ENSMUSG00000092516.1 ENSMUSG00000092516 ENSMUST00000174520 Gm20397 processed_pseudogene Interval_53710 chr14 61060540 61060781 + 0 NA intron (ENSMUSG00000115627.1, intron 2 of 3) lincRNA-intron (ENSMUSG00000115627.1, intron 2 of 3) -2767 ENSMUSG00000115627.1 ENSMUSG00000115627 ENSMUST00000227839 Gm41168 lincRNA Interval_11509 chr1 182332594 182333080 + 0 NA intron (ENSMUSG00000047539.9, intron 1 of 3) protein_coding-intron (ENSMUSG00000047539.9, intron 1 of 4) 8734 ENSMUSG00000047539.9 ENSMUSG00000047539 ENSMUST00000194213 Fbxo28 protein_coding Interval_86171 chr19 37529887 37530519 + 0 NA intron (ENSMUSG00000053799.8, intron 1 of 22) protein_coding-intron (ENSMUSG00000053799.8, intron 1 of 22) 9324 ENSMUSG00000053799.8 ENSMUSG00000053799 ENSMUST00000238817 Exoc6 protein_coding Interval_100763 chr2 172415773 172416272 + 0 NA intron (ENSMUSG00000074570.14, intron 1 of 5) protein_coding-intron (ENSMUSG00000074570.14, intron 1 of 4) 22121 ENSMUSG00000074570.14 ENSMUSG00000074570 ENSMUST00000228775 Cass4 protein_coding Interval_110522 chr4 3556326 3556943 + 0 NA intron (ENSMUSG00000028232.13, intron 6 of 8) protein_coding-intron (ENSMUSG00000028232.13, intron 5 of 7) 18175 ENSMUSG00000028232.13 ENSMUSG00000028232 ENSMUST00000134451 Tmem68 protein_coding Interval_54925 chr14 76277717 76278175 + 0 NA Intergenic Intergenic 26489 ENSMUSG00000115625.1 ENSMUSG00000115625 ENSMUST00000227933 2900040C04Rik lincRNA Interval_166863 chr9 63353921 63354454 + 0 NA intron (ENSMUSG00000058444.8, intron 3 of 4) protein_coding-intron (ENSMUSG00000058444.8, intron 3 of 21) 23690 ENSMUSG00000058444.8 ENSMUSG00000058444 ENSMUST00000216999 Map2k5 protein_coding Interval_89826 chr2 25736757 25737057 + 0 NA promoter-TSS (ENSMUSG00000079539.2) protein_coding-promoter-TSS (ENSMUSG00000079539.2) -102 ENSMUSG00000079539.2 ENSMUSG00000079539 ENSMUST00000114192 Obp2b protein_coding Interval_137234 chr6 70553975 70554430 + 0 NA TTS (ENSMUSG00000105499.1) IG_V_pseudogene-TTS (ENSMUSG00000105499.1) 963 ENSMUSG00000105499.1 ENSMUSG00000105499 ENSMUST00000197500 Igkv3-11 IG_V_pseudogene Interval_113932 chr4 59962472 59964405 + 0 NA promoter-TSS (ENSMUSG00000078689.8) protein_coding-promoter-TSS (ENSMUSG00000078689.8) -856 ENSMUSG00000078689.8 ENSMUSG00000078689 ENSMUST00000107520 Mup6 protein_coding Interval_1229 chr1 17666343 17666842 + 0 NA Intergenic Intergenic -25511 ENSMUSG00000100053.1 ENSMUSG00000100053 ENSMUST00000186267 Gm28154 antisense Interval_15261 chr10 43901065 43902938 + 0 NA promoter-TSS (ENSMUSG00000019863.7) protein_coding-promoter-TSS (ENSMUSG00000019863.7) -6460 ENSMUSG00000019863.7 ENSMUSG00000019863 ENSMUST00000217541 Qrsl1 protein_coding Interval_47745 chr13 92219412 92219662 + 0 NA intron (ENSMUSG00000014850.15, intron 23 of 24) protein_coding-intron (ENSMUSG00000014850.15, intron 22 of 23) -86443 ENSMUSG00000100622.1 ENSMUSG00000100622 ENSMUST00000188317 Gm20379 protein_coding Interval_150485 chr7 111105141 111105793 + 0 NA intron (ENSMUSG00000110424.1, intron 2 of 2) processed_transcript-intron (ENSMUSG00000110424.1, intron 2 of 2) -12651 ENSMUSG00000110326.1 ENSMUSG00000110326 ENSMUST00000211063 Gm45378 TEC Interval_57951 chr15 25713526 25714365 + 0 NA promoter-TSS (ENSMUSG00000022272.17) protein_coding-promoter-TSS (ENSMUSG00000022272.17) 32147 ENSMUSG00000089639.1 ENSMUSG00000089639 ENSMUST00000161524 Gm2862 processed_pseudogene Interval_27732 chr11 69718773 69719678 + 0 NA Intergenic Intergenic 11359 ENSMUSG00000081333.1 ENSMUSG00000081333 ENSMUST00000120581 Gm12307 processed_pseudogene Interval_145062 chr7 29818648 29819424 + 0 NA promoter-TSS (ENSMUSG00000011427.16) protein_coding-promoter-TSS (ENSMUSG00000011427.16) 45 ENSMUSG00000011427.16 ENSMUSG00000011427 ENSMUST00000207328 Zfp790 protein_coding Interval_91124 chr2 35272714 35273290 + 0 NA intron (ENSMUSG00000026879.14, intron 2 of 17) protein_coding-intron (ENSMUSG00000026879.14, intron 2 of 5) -7388 ENSMUSG00000106961.1 ENSMUSG00000106961 ENSMUST00000202212 Gm43128 TEC Interval_75994 chr17 74248845 74250330 + 0 NA intron (ENSMUSG00000058704.9, intron 3 of 8) protein_coding-intron (ENSMUSG00000058704.9, intron 3 of 8) 37629 ENSMUSG00000117262.1 ENSMUSG00000117262 ENSMUST00000233585 Gm9316 processed_pseudogene Interval_40704 chr12 107670455 107670726 + 0 NA Intergenic Intergenic 57590 ENSMUSG00000079359.2 ENSMUSG00000079359 ENSMUST00000165520 Gm9006 processed_pseudogene Interval_170647 chr9 109884144 109884673 + 0 NA promoter-TSS (ENSMUSG00000032477.14) protein_coding-promoter-TSS (ENSMUSG00000032477.14) 804 ENSMUSG00000032477.14 ENSMUSG00000032477 ENSMUST00000198219 Cdc25a protein_coding Interval_6539 chr1 115044735 115044946 + 0 NA Intergenic Intergenic 174923 ENSMUSG00000101687.1 ENSMUSG00000101687 ENSMUST00000185902 Gm4854 processed_pseudogene Interval_119329 chr4 136899319 136900506 + 0 NA Intergenic Intergenic -1109 ENSMUSG00000036887.5 ENSMUSG00000036887 ENSMUST00000046285 C1qa protein_coding Interval_111623 chr4 24720952 24721263 + 0 NA intron (ENSMUSG00000040387.16, intron 1 of 7) protein_coding-intron (ENSMUSG00000040387.16, intron 4 of 9) 22858 ENSMUSG00000040387.16 ENSMUSG00000040387 ENSMUST00000144062 Klhl32 protein_coding Interval_130253 chr5 125235475 125236162 + 0 NA Intergenic Intergenic 36997 ENSMUSG00000105039.1 ENSMUSG00000105039 ENSMUST00000198586 Gm32585 lincRNA Interval_24223 chr11 31632665 31632868 + 0 NA Intergenic Intergenic 38961 ENSMUSG00000044502.16 ENSMUSG00000044502 ENSMUST00000109415 Bod1 protein_coding Interval_83971 chr19 5862090 5863191 + 0 NA intron (ENSMUSG00000024816.12, intron 1 of 1) protein_coding-intron (ENSMUSG00000024816.12, intron 8 of 10) 12599 ENSMUSG00000024816.12 ENSMUSG00000024816 ENSMUST00000155227 Frmd8 protein_coding Interval_28383 chr11 75519933 75520820 + 0 NA exon (ENSMUSG00000038188.17, exon 5 of 11) protein_coding-exon (ENSMUSG00000038188.17, exon 5 of 11) 6801 ENSMUSG00000038188.17 ENSMUSG00000038188 ENSMUST00000123819 Scarf1 protein_coding Interval_81775 chr18 64556840 64557151 + 0 NA exon (ENSMUSG00000039529.9, exon 16 of 28) protein_coding-exon (ENSMUSG00000039529.9, exon 16 of 28) 44648 ENSMUSG00000117808.1 ENSMUSG00000117808 ENSMUST00000235291 Gm50338 TEC Interval_58773 chr15 37999168 37999735 + 0 NA intron (ENSMUSG00000037487.7, intron 2 of 4) protein_coding-intron (ENSMUSG00000037487.7, intron 36 of 58) -28836 ENSMUSG00000037487.7 ENSMUSG00000037487 ENSMUST00000227143 Ubr5 protein_coding Interval_164998 chr9 43783945 43784153 + 0 NA intron (ENSMUSG00000032012.9, intron 1 of 7) protein_coding-intron (ENSMUSG00000032012.9, intron 1 of 5) 39405 ENSMUSG00000032012.9 ENSMUSG00000032012 ENSMUST00000180221 Nectin1 protein_coding Interval_132585 chr5 146471185 146471893 + 0 NA exon (ENSMUSG00000029636.11, exon 10 of 10) protein_coding-exon (ENSMUSG00000029636.11, exon 10 of 10) -10426 ENSMUSG00000096344.2 ENSMUSG00000096344 ENSMUST00000179032 Gm6408 protein_coding Interval_48146 chr13 96660033 96660694 + 0 NA intron (ENSMUSG00000021670.14, intron 5 of 16) protein_coding-intron (ENSMUSG00000021670.14, intron 6 of 19) 6224 ENSMUSG00000021670.14 ENSMUSG00000021670 ENSMUST00000168374 Hmgcr protein_coding Interval_31971 chr11 104245892 104246673 + 0 NA intron (ENSMUSG00000018411.17, intron 1 of 5) protein_coding-intron (ENSMUSG00000018411.17, intron 1 of 11) 4862 ENSMUSG00000065379.1 ENSMUSG00000065379 ENSMUST00000083445 Gm22743 snoRNA Interval_17760 chr10 79937064 79937465 + 0 NA intron (ENSMUSG00000019564.12, intron 3 of 8) protein_coding-intron (ENSMUSG00000019564.12, intron 3 of 8) -9015 ENSMUSG00000019564.12 ENSMUSG00000019564 ENSMUST00000135005 Arid3a protein_coding Interval_38991 chr12 84329960 84330957 + 0 NA exon (ENSMUSG00000042472.11, exon 6 of 6) protein_coding-exon (ENSMUSG00000042472.11, exon 6 of 6) 13340 ENSMUSG00000042472.11 ENSMUSG00000042472 ENSMUST00000220832 Zfp410 protein_coding Interval_87131 chr19 46363030 46364155 + 0 NA intron (ENSMUSG00000025227.14, intron 1 of 2) protein_coding-intron (ENSMUSG00000025227.14, intron 1 of 8) 4556 ENSMUSG00000065204.1 ENSMUSG00000065204 ENSMUST00000083270 Gm24610 snoRNA Interval_59443 chr15 53195558 53196844 + 0 NA promoter-TSS (ENSMUSG00000061731.9) protein_coding-promoter-TSS (ENSMUSG00000061731.9) -88333 ENSMUSG00000061731.9 ENSMUSG00000061731 ENSMUST00000140798 Ext1 protein_coding Interval_8371 chr1 138327480 138328679 + 0 NA Intergenic Intergenic -49185 ENSMUSG00000101793.1 ENSMUSG00000101793 ENSMUST00000190286 Gm28500 processed_pseudogene Interval_36171 chr12 37571464 37571717 + 0 NA intron (ENSMUSG00000050103.18, intron 1 of 1) protein_coding-intron (ENSMUSG00000050103.18, intron 12 of 12) 2311 ENSMUSG00000114007.1 ENSMUSG00000114007 ENSMUST00000221458 Gm48660 processed_pseudogene Interval_167730 chr9 72339089 72339853 + 0 NA intron (ENSMUSG00000038535.17, intron 18 of 19) protein_coding-intron (ENSMUSG00000038535.17, intron 19 of 21) -15604 ENSMUSG00000103133.1 ENSMUSG00000103133 ENSMUST00000194202 Gm37303 TEC Interval_55983 chr14 103660939 103661141 + 0 NA intron (ENSMUSG00000055717.13, intron 2 of 3) protein_coding-intron (ENSMUSG00000055717.13, intron 2 of 6) 5269 ENSMUSG00000055717.13 ENSMUSG00000055717 ENSMUST00000159456 Slain1 protein_coding Interval_35295 chr12 19983960 19985400 + 0 NA Intergenic Intergenic -16046 ENSMUSG00000112956.1 ENSMUSG00000112956 ENSMUST00000221058 Gm48645 processed_pseudogene Interval_140859 chr6 122402168 122403167 + 0 NA intron (ENSMUSG00000118448.1, intron 1 of 21) unitary_pseudogene-intron (ENSMUSG00000118448.1, intron 1 of 21) 6408 ENSMUSG00000118448.1 ENSMUSG00000118448 ENSMUST00000238395 Gm50492 unitary_pseudogene Interval_174567 chrX 158423702 158423973 + 0 NA Intergenic Intergenic 50755 ENSMUSG00000088896.1 ENSMUSG00000088896 ENSMUST00000158271 Gm22522 snoRNA Interval_126056 chr5 77137980 77138347 + 0 NA TTS (ENSMUSG00000106783.1) lincRNA-TTS (ENSMUSG00000106783.1) 2089 ENSMUSG00000106783.1 ENSMUSG00000106783 ENSMUST00000201649 Chaer1 lincRNA Interval_160982 chr8 116644976 116645814 + 0 NA intron (ENSMUSG00000031758.10, intron 1 of 6) protein_coding-intron (ENSMUSG00000031758.10, intron 1 of 6) 87596 ENSMUSG00000031758.10 ENSMUSG00000031758 ENSMUST00000109102 Cdyl2 protein_coding Interval_87340 chr19 47826958 47828245 + 0 NA intron (ENSMUSG00000044948.17, intron 3 of 37) protein_coding-intron (ENSMUSG00000044948.17, intron 3 of 13) -27437 ENSMUSG00000025068.8 ENSMUSG00000025068 ENSMUST00000143694 Gsto1 protein_coding Interval_120502 chr4 149036104 149037226 + 0 NA intron (ENSMUSG00000028975.16, intron 3 of 4) protein_coding-intron (ENSMUSG00000028975.16, intron 3 of 8) -59718 ENSMUSG00000081086.1 ENSMUSG00000081086 ENSMUST00000118516 Gm9506 processed_pseudogene Interval_80141 chr18 37822086 37822992 + 0 NA exon (ENSMUSG00000102543.5, exon 1 of 3) protein_coding-exon (ENSMUSG00000102543.5, exon 1 of 3) -2198 ENSMUSG00000102828.5 ENSMUSG00000102828 ENSMUST00000194980 Gm38182 processed_transcript Interval_145458 chr7 34877964 34878383 + 0 NA Intergenic Intergenic 65812 ENSMUSG00000077469.1 ENSMUSG00000077469 ENSMUST00000104281 Gm25922 snoRNA Interval_110628 chr4 5098462 5098906 + 0 NA Intergenic Intergenic -119810 ENSMUSG00000083228.1 ENSMUSG00000083228 ENSMUST00000118541 Gm11779 processed_pseudogene Interval_158346 chr8 82213989 82214558 + 0 NA Intergenic Intergenic -6887 ENSMUSG00000110045.1 ENSMUSG00000110045 ENSMUST00000209515 Gm38590 lincRNA Interval_136314 chr6 52957870 52958107 + 0 NA intron (ENSMUSG00000063568.11, intron 1 of 4) protein_coding-intron (ENSMUSG00000063568.11, intron 1 of 4) -48368 ENSMUSG00000063568.11 ENSMUSG00000063568 ENSMUST00000074541 Jazf1 protein_coding Interval_37991 chr12 73671365 73672164 + 0 NA intron (ENSMUSG00000021108.18, intron 3 of 14) protein_coding-intron (ENSMUSG00000021108.18, intron 2 of 13) 86968 ENSMUSG00000021108.18 ENSMUSG00000021108 ENSMUST00000220898 Prkch protein_coding Interval_134080 chr6 18988558 18989439 + 0 NA Intergenic Intergenic -57839 ENSMUSG00000084650.1 ENSMUSG00000084650 ENSMUST00000122701 Gm22718 misc_RNA Interval_127440 chr5 103944630 103945024 + 0 NA Intergenic Intergenic 32499 ENSMUSG00000034528.15 ENSMUSG00000034528 ENSMUST00000112803 Hsd17b13 protein_coding Interval_122579 chr5 23890688 23891841 + 0 NA Intergenic Intergenic -14821 ENSMUSG00000118576.1 ENSMUSG00000118576 ENSMUST00000239129 AC117663.1 unprocessed_pseudogene Interval_94860 chr2 98031829 98032679 + 0 NA Intergenic Intergenic -82575 ENSMUSG00000082820.3 ENSMUSG00000082820 ENSMUST00000117547 Gm13803 processed_pseudogene Interval_66246 chr16 32614172 32614366 + 0 NA promoter-TSS (ENSMUSG00000022797.16) protein_coding-promoter-TSS (ENSMUSG00000022797.16) -6120 ENSMUSG00000022797.16 ENSMUSG00000022797 ENSMUST00000128285 Tfrc protein_coding Interval_44887 chr13 49380914 49381701 + 0 NA intron (ENSMUSG00000037933.16, intron 6 of 7) protein_coding-intron (ENSMUSG00000037933.16, intron 6 of 6) -1782 ENSMUSG00000037933.16 ENSMUSG00000037933 ENSMUST00000220723 Bicd2 protein_coding Interval_14648 chr10 37707679 37708624 + 0 NA Intergenic Intergenic -223529 ENSMUSG00000096080.1 ENSMUSG00000096080 ENSMUST00000175235 Gm24710 miRNA Interval_122437 chr5 22633629 22633951 + 0 NA intron (ENSMUSG00000097207.7, intron 3 of 4) lincRNA-intron (ENSMUSG00000097207.7, intron 3 of 4) 11393 ENSMUSG00000092704.1 ENSMUSG00000092704 ENSMUST00000174963 Gm24512 snRNA Interval_171256 chr9 115704241 115704870 + 0 NA Intergenic Intergenic 23812 ENSMUSG00000110905.1 ENSMUSG00000110905 ENSMUST00000215982 Gm48007 lincRNA Interval_14545 chr10 35172783 35173204 + 0 NA Intergenic Intergenic 30680 ENSMUSG00000111216.1 ENSMUSG00000111216 ENSMUST00000216575 Gm47044 processed_pseudogene Interval_22210 chr11 7185903 7186444 + 0 NA exon (ENSMUSG00000087512.2, exon 2 of 4) protein_coding-exon (ENSMUSG00000087512.2, exon 2 of 4) 2396 ENSMUSG00000087512.2 ENSMUSG00000087512 ENSMUST00000122910 Ccdc201 protein_coding Interval_45280 chr13 53891420 53892292 + 0 NA Intergenic Intergenic 3229 ENSMUSG00000114012.1 ENSMUSG00000114012 ENSMUST00000221478 Gm18974 processed_pseudogene Interval_123133 chr5 30014744 30014947 + 0 NA exon (ENSMUSG00000025746.11, exon 3 of 5) protein_coding-exon (ENSMUSG00000025746.11, exon 3 of 5) 1524 ENSMUSG00000025746.11 ENSMUSG00000025746 ENSMUST00000199765 Il6 protein_coding Interval_112179 chr4 35243926 35244168 + 0 NA intron (ENSMUSG00000084828.1, intron 1 of 1) processed_transcript-intron (ENSMUSG00000084828.1, intron 1 of 1) -17872 ENSMUSG00000028300.14 ENSMUSG00000028300 ENSMUST00000149138 C9orf72 protein_coding Interval_50706 chr14 18377594 18378553 + 0 NA Intergenic Intergenic -46329 ENSMUSG00000021774.13 ENSMUSG00000021774 ENSMUST00000161580 Ube2e1 protein_coding Interval_134149 chr6 21969602 21970314 + 0 NA exon (ENSMUSG00000029670.12, exon 9 of 12) protein_coding-exon (ENSMUSG00000029670.12, exon 9 of 12) 20273 ENSMUSG00000029670.12 ENSMUSG00000029670 ENSMUST00000141689 Ing3 protein_coding Interval_70797 chr17 14666610 14666846 + 0 NA TTS (ENSMUSG00000023885.9) protein_coding-TTS (ENSMUSG00000023885.9) 4138 ENSMUSG00000023885.9 ENSMUSG00000023885 ENSMUST00000232616 Thbs2 protein_coding Interval_37881 chr12 72773838 72774351 + 0 NA intron (ENSMUSG00000021096.11, intron 1 of 2) protein_coding-intron (ENSMUSG00000021096.11, intron 1 of 5) 12779 ENSMUSG00000021096.11 ENSMUSG00000021096 ENSMUST00000222920 Ppm1a protein_coding Interval_138180 chr6 85965569 85966798 + 0 NA intron (ENSMUSG00000107230.1, intron 2 of 2) antisense-intron (ENSMUSG00000107230.1, intron 2 of 2) -4541 ENSMUSG00000030002.15 ENSMUSG00000030002 ENSMUST00000202379 Dusp11 protein_coding Interval_9503 chr1 158165535 158165791 + 0 NA Intergenic Intergenic 190566 ENSMUSG00000004031.13 ENSMUSG00000004031 ENSMUST00000192709 Brinp2 protein_coding Interval_6482 chr1 111634053 111634624 + 0 NA Intergenic Intergenic 173437 ENSMUSG00000100555.1 ENSMUSG00000100555 ENSMUST00000186797 Gm8173 processed_pseudogene Interval_12748 chr10 4711809 4713170 + 0 NA promoter-TSS (ENSMUSG00000019768.16) protein_coding-promoter-TSS (ENSMUSG00000019768.16) 100896 ENSMUSG00000019768.16 ENSMUSG00000019768 ENSMUST00000137012 Esr1 protein_coding Interval_163217 chr9 18403939 18404188 + 0 NA promoter-TSS (ENSMUSG00000074502.4) protein_coding-promoter-TSS (ENSMUSG00000074502.4) -357 ENSMUSG00000074502.4 ENSMUSG00000074502 ENSMUST00000098973 Ubtfl1 protein_coding Interval_101208 chr2 179512934 179513123 + 0 NA intron (ENSMUSG00000000305.12, intron 2 of 2) protein_coding-intron (ENSMUSG00000000305.12, intron 2 of 15) 98092 ENSMUSG00000039138.1 ENSMUSG00000039138 ENSMUST00000041998 4930591A17Rik lincRNA Interval_69949 chr17 3446565 3447006 + 0 NA intron (ENSMUSG00000023800.15, intron 9 of 26) protein_coding-intron (ENSMUSG00000023800.15, intron 9 of 26) 15547 ENSMUSG00000115039.1 ENSMUSG00000115039 ENSMUST00000228135 Gm7043 processed_pseudogene Interval_90343 chr2 29889044 29891004 + 0 NA promoter-TSS (ENSMUSG00000026790.19) protein_coding-promoter-TSS (ENSMUSG00000026790.19) 226 ENSMUSG00000026790.19 ENSMUSG00000026790 ENSMUST00000152026 Odf2 protein_coding Interval_55796 chr14 100235548 100236078 + 0 NA intron (ENSMUSG00000054391.12, intron 3 of 4) antisense-intron (ENSMUSG00000054391.12, intron 3 of 4) 16327 ENSMUSG00000084991.1 ENSMUSG00000084991 ENSMUST00000155141 Gm16260 processed_pseudogene Interval_139751 chr6 108380938 108381187 + 0 NA exon (ENSMUSG00000030102.11, exon 17 of 62) protein_coding-exon (ENSMUSG00000030102.11, exon 17 of 62) -6372 ENSMUSG00000030102.11 ENSMUSG00000030102 ENSMUST00000205005 Itpr1 protein_coding Interval_7633 chr1 132666669 132666954 + 0 NA intron (ENSMUSG00000026442.14, intron 1 of 2) protein_coding-intron (ENSMUSG00000026442.14, intron 1 of 26) -42299 ENSMUSG00000026442.14 ENSMUSG00000026442 ENSMUST00000189219 Nfasc protein_coding Interval_65862 chr16 29871254 29872294 + 0 NA Intergenic Intergenic -37046 ENSMUSG00000116891.1 ENSMUSG00000116891 ENSMUST00000232318 Gm32679 lincRNA Interval_117973 chr4 127405063 127405730 + 0 NA Intergenic Intergenic 3402 ENSMUSG00000079998.2 ENSMUSG00000079998 ENSMUST00000116114 Gm12947 processed_pseudogene Interval_71642 chr17 25084060 25084259 + 0 NA promoter-TSS (ENSMUSG00000024168.8) protein_coding-promoter-TSS (ENSMUSG00000024168.8) -568 ENSMUSG00000024168.8 ENSMUSG00000024168 ENSMUST00000153745 Tmem204 protein_coding Interval_85930 chr19 33391523 33392405 + 0 NA exon (ENSMUSG00000071573.14, exon 1 of 7) polymorphic_pseudogene-exon (ENSMUSG00000071573.14, exon 1 of 7) 331 ENSMUSG00000071573.14 ENSMUSG00000071573 ENSMUST00000163093 Rnls polymorphic_pseudogene Interval_27776 chr11 69919688 69922224 + 0 NA promoter-TSS (ENSMUSG00000078812.10) protein_coding-promoter-TSS (ENSMUSG00000078812.10) 129 ENSMUSG00000078812.10 ENSMUSG00000078812 ENSMUST00000152589 Eif5a protein_coding Interval_133189 chr5 150436582 150437340 + 0 NA promoter-TSS (ENSMUSG00000056602.12) protein_coding-promoter-TSS (ENSMUSG00000056602.12) 5343 ENSMUSG00000118543.1 ENSMUSG00000118543 ENSMUST00000239092 AC154885.1 unprocessed_pseudogene Interval_23267 chr11 21032902 21035162 + 0 NA Intergenic Intergenic -57259 ENSMUSG00000020134.13 ENSMUSG00000020134 ENSMUST00000101477 Peli1 protein_coding Interval_71512 chr17 24234467 24234723 + 0 NA promoter-TSS (ENSMUSG00000093270.1) miRNA-promoter-TSS (ENSMUSG00000093270.1) 9 ENSMUSG00000093270.1 ENSMUSG00000093270 ENSMUST00000175529 Mir5134 miRNA Interval_21599 chr10 130456910 130457244 + 0 NA Intergenic Intergenic -1027 ENSMUSG00000092162.3 ENSMUSG00000092162 ENSMUST00000170257 Vmn2r86 protein_coding Interval_92469 chr2 59936304 59936533 + 0 NA intron (ENSMUSG00000026987.16, intron 4 of 9) protein_coding-intron (ENSMUSG00000026987.16, intron 14 of 33) 55926 ENSMUSG00000081236.1 ENSMUSG00000081236 ENSMUST00000120482 Gm13574 processed_pseudogene Interval_152413 chr7 132858913 132859968 + 0 NA exon (ENSMUSG00000030965.19, exon 1 of 1) protein_coding-exon (ENSMUSG00000030965.19, exon 1 of 1) 205 ENSMUSG00000030965.19 ENSMUSG00000030965 ENSMUST00000138436 Abraxas2 protein_coding Interval_62984 chr15 98497565 98498621 + 0 NA exon (ENSMUSG00000054036.6, exon 1 of 1) protein_coding-exon (ENSMUSG00000054036.6, exon 1 of 1) -1312 ENSMUSG00000108805.1 ENSMUSG00000108805 ENSMUST00000205676 Olfr278-ps1 unprocessed_pseudogene Interval_109927 chr3 151836564 151838073 + 0 NA exon (ENSMUSG00000028036.6, exon 1 of 3) protein_coding-exon (ENSMUSG00000028036.6, exon 1 of 3) 813 ENSMUSG00000105403.1 ENSMUSG00000105403 ENSMUST00000197392 Gm43618 TEC Interval_106672 chr3 98355098 98356251 + 0 NA Intergenic Intergenic -22104 ENSMUSG00000053398.11 ENSMUSG00000053398 ENSMUST00000148488 Phgdh protein_coding Interval_109268 chr3 138511662 138511852 + 0 NA Intergenic Intergenic -7545 ENSMUSG00000106462.1 ENSMUSG00000106462 ENSMUST00000200122 Gm43725 processed_pseudogene Interval_29454 chr11 84095078 84096329 + 0 NA intron (ENSMUSG00000018651.14, intron 8 of 15) protein_coding-intron (ENSMUSG00000018651.14, intron 8 of 15) -12747 ENSMUSG00000018651.14 ENSMUSG00000018651 ENSMUST00000134994 Tada2a protein_coding Interval_97223 chr2 132339164 132340503 + 0 NA exon (ENSMUSG00000050558.13, exon 3 of 3) protein_coding-exon (ENSMUSG00000050558.13, exon 3 of 3) 45588 ENSMUSG00000050558.13 ENSMUSG00000050558 ENSMUST00000145995 Prokr2 protein_coding Interval_38869 chr12 83516150 83516950 + 0 NA Intergenic Intergenic -9450 ENSMUSG00000021222.9 ENSMUSG00000021222 ENSMUST00000221944 Dcaf4 protein_coding Interval_148643 chr7 83755507 83756242 + 0 NA promoter-TSS (ENSMUSG00000063902.13) processed_pseudogene-promoter-TSS (ENSMUSG00000063902.13) -30 ENSMUSG00000063902.13 ENSMUSG00000063902 ENSMUST00000051522 Gm7964 processed_pseudogene Interval_55979 chr14 103557775 103558598 + 0 NA intron (ENSMUSG00000022123.9, intron 8 of 29) protein_coding-intron (ENSMUSG00000022123.9, intron 8 of 30) 44844 ENSMUSG00000022123.9 ENSMUSG00000022123 ENSMUST00000095576 Scel protein_coding Interval_54067 chr14 64967871 64968731 + 0 NA intron (ENSMUSG00000021975.9, intron 1 of 16) protein_coding-intron (ENSMUSG00000021975.9, intron 1 of 16) 18256 ENSMUSG00000021975.9 ENSMUSG00000021975 ENSMUST00000225790 Ints9 protein_coding Interval_51760 chr14 32032491 32032994 + 0 NA intron (ENSMUSG00000021903.11, intron 1 of 7) protein_coding-intron (ENSMUSG00000021903.11, intron 1 of 9) 3332 ENSMUSG00000021903.11 ENSMUSG00000021903 ENSMUST00000164208 Galnt15 protein_coding Interval_152339 chr7 132025532 132026817 + 0 NA intron (ENSMUSG00000030849.18, intron 2 of 6) protein_coding-intron (ENSMUSG00000030849.18, intron 2 of 6) 22944 ENSMUSG00000030862.13 ENSMUSG00000030862 ENSMUST00000136188 Cpxm2 protein_coding Interval_37957 chr12 73344002 73344531 + 0 NA promoter-TSS (ENSMUSG00000044712.15) protein_coding-promoter-TSS (ENSMUSG00000044712.15) -10815 ENSMUSG00000113425.1 ENSMUSG00000113425 ENSMUST00000222671 Gm48653 lincRNA Interval_122749 chr5 25084778 25085024 + 0 NA intron (ENSMUSG00000028944.14, intron 1 of 15) protein_coding-intron (ENSMUSG00000028944.14, intron 1 of 15) -16082 ENSMUSG00000043833.6 ENSMUSG00000043833 ENSMUST00000128569 2900005J15Rik processed_transcript Interval_147422 chr7 66826954 66827232 + 0 NA Intergenic Intergenic -12642 ENSMUSG00000058145.16 ENSMUSG00000058145 ENSMUST00000154103 Adamts17 protein_coding Interval_32399 chr11 107347515 107348280 + 0 NA intron (ENSMUSG00000040430.18, intron 1 of 9) protein_coding-intron (ENSMUSG00000040430.18, intron 1 of 9) 9847 ENSMUSG00000086298.1 ENSMUSG00000086298 ENSMUST00000154414 Gm11716 antisense Interval_72481 chr17 30096632 30096822 + 0 NA intron (ENSMUSG00000044477.12, intron 2 of 5) protein_coding-intron (ENSMUSG00000044477.12, intron 2 of 4) -39463 ENSMUSG00000044477.12 ENSMUSG00000044477 ENSMUST00000234091 Zfand3 protein_coding Interval_92873 chr2 67525378 67526453 + 0 NA TTS (ENSMUSG00000027022.14) protein_coding-TTS (ENSMUSG00000027022.14) 8953 ENSMUSG00000027022.14 ENSMUSG00000027022 ENSMUST00000239164 Xirp2 protein_coding Interval_20631 chr10 119761451 119761834 + 0 NA promoter-TSS (ENSMUSG00000084764.1) antisense-promoter-TSS (ENSMUSG00000084764.1) 57 ENSMUSG00000084764.1 ENSMUSG00000084764 ENSMUST00000153898 Grip1os2 antisense Interval_62116 chr15 87201331 87201732 + 0 NA Intergenic Intergenic 32418 ENSMUSG00000064631.1 ENSMUSG00000064631 ENSMUST00000082697 n-R5s42 rRNA Interval_76363 chr17 79517188 79518617 + 0 NA Intergenic Intergenic -154498 ENSMUSG00000036368.8 ENSMUSG00000036368 ENSMUST00000224097 Rmdn2 protein_coding Interval_77095 chr17 86490460 86491066 + 0 NA exon (ENSMUSG00000045038.14, exon 9 of 16) protein_coding-exon (ENSMUSG00000045038.14, exon 9 of 16) 201 ENSMUSG00000045038.14 ENSMUSG00000045038 ENSMUST00000136986 Prkce protein_coding Interval_53443 chr14 57542187 57543972 + 0 NA TTS (ENSMUSG00000050222.11) protein_coding-TTS (ENSMUSG00000050222.11) 18302 ENSMUSG00000050222.11 ENSMUSG00000050222 ENSMUST00000089494 Il17d protein_coding Interval_101158 chr2 178622668 178623138 + 0 NA Intergenic Intergenic 162273 ENSMUSG00000039155.15 ENSMUSG00000039155 ENSMUST00000176869 Cdh26 protein_coding Interval_74024 chr17 46129437 46130189 + 0 NA TTS (ENSMUSG00000023967.9) protein_coding-TTS (ENSMUSG00000023967.9) 4538 ENSMUSG00000023967.9 ENSMUSG00000023967 ENSMUST00000146255 Mrps18a protein_coding Interval_2250 chr1 37356795 37357098 + 0 NA promoter-TSS (ENSMUSG00000026113.17) protein_coding-promoter-TSS (ENSMUSG00000026113.17) -451 ENSMUSG00000026113.17 ENSMUSG00000026113 ENSMUST00000123124 Inpp4a protein_coding Interval_22522 chr11 11454903 11455482 + 0 NA intron (ENSMUSG00000020193.3, intron 2 of 7) protein_coding-intron (ENSMUSG00000020193.3, intron 2 of 7) -6902 ENSMUSG00000020191.11 ENSMUSG00000020191 ENSMUST00000109678 Spata48 protein_coding Interval_64709 chr16 14376555 14377002 + 0 NA intron (ENSMUSG00000023088.17, intron 1 of 2) protein_coding-intron (ENSMUSG00000023088.17, intron 1 of 30) -6029 ENSMUSG00000089106.1 ENSMUSG00000089106 ENSMUST00000158481 Gm23116 snRNA Interval_108343 chr3 124571738 124572742 + 0 NA TTS (ENSMUSG00000039174.14) protein_coding-TTS (ENSMUSG00000039174.14) 8851 ENSMUSG00000039174.14 ENSMUSG00000039174 ENSMUST00000178953 1700003H04Rik protein_coding Interval_180 JH792828.1 184704 184964 + 0 NA NA NA NA NA Interval_117619 chr4 125091232 125091442 + 0 NA intron (ENSMUSG00000028863.13, intron 4 of 7) protein_coding-intron (ENSMUSG00000028863.13, intron 4 of 5) 6173 ENSMUSG00000028863.13 ENSMUSG00000028863 ENSMUST00000155212 Meaf6 protein_coding Interval_25198 chr11 45169315 45169558 + 0 NA intron (ENSMUSG00000087089.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000087089.1, intron 1 of 1) 8493 ENSMUSG00000087089.1 ENSMUSG00000087089 ENSMUST00000146372 Gm12160 lincRNA Interval_90110 chr2 28153435 28153842 + 0 NA Intergenic Intergenic -39354 ENSMUSG00000026833.18 ENSMUSG00000026833 ENSMUST00000028177 Olfm1 protein_coding Interval_21673 chr11 3613724 3614551 + 0 NA Intergenic Intergenic 11711 ENSMUSG00000084211.1 ENSMUSG00000084211 ENSMUST00000117640 Gm11949 processed_pseudogene Interval_60076 chr15 64589854 64590860 + 0 NA Intergenic Intergenic 43151 ENSMUSG00000115328.1 ENSMUSG00000115328 ENSMUST00000227641 Gm30691 lincRNA Interval_7652 chr1 132829025 132829914 + 0 NA Intergenic Intergenic -15121 ENSMUSG00000088911.1 ENSMUSG00000088911 ENSMUST00000158286 Gm22609 snoRNA Interval_57764 chr15 19249026 19249581 + 0 NA Intergenic Intergenic 11554 ENSMUSG00000115352.1 ENSMUSG00000115352 ENSMUST00000226570 Gm49160 lincRNA Interval_152774 chr7 137445675 137446420 + 0 NA intron (ENSMUSG00000031068.8, intron 2 of 9) protein_coding-intron (ENSMUSG00000031068.8, intron 2 of 10) 8382 ENSMUSG00000031068.8 ENSMUSG00000031068 ENSMUST00000211598 Glrx3 protein_coding Interval_128087 chr5 110799460 110799757 + 0 NA intron (ENSMUSG00000029512.11, intron 3 of 27) protein_coding-intron (ENSMUSG00000029512.11, intron 3 of 27) 10445 ENSMUSG00000029512.11 ENSMUSG00000029512 ENSMUST00000198470 Ulk1 protein_coding Interval_8136 chr1 135941826 135942405 + 0 NA Intergenic Intergenic -22973 ENSMUSG00000026413.12 ENSMUSG00000026413 ENSMUST00000132793 Pkp1 protein_coding Interval_94907 chr2 101611010 101611249 + 0 NA promoter-TSS (ENSMUSG00000027165.16) protein_coding-promoter-TSS (ENSMUSG00000027165.16) -13617 ENSMUSG00000032864.4 ENSMUSG00000032864 ENSMUST00000111227 Rag2 protein_coding Interval_152845 chr7 138743182 138743872 + 0 NA Intergenic Intergenic 42624 ENSMUSG00000109802.1 ENSMUSG00000109802 ENSMUST00000211166 Gm30808 lincRNA Interval_92466 chr2 59881995 59883102 + 0 NA promoter-TSS (ENSMUSG00000026988.15) protein_coding-promoter-TSS (ENSMUSG00000026988.15) -19822 ENSMUSG00000026988.15 ENSMUSG00000026988 ENSMUST00000131285 Wdsub1 protein_coding Interval_123036 chr5 29024838 29026019 + 0 NA Intergenic Intergenic -171159 ENSMUSG00000029130.12 ENSMUSG00000029130 ENSMUST00000163050 Rnf32 protein_coding Interval_145962 chr7 42692290 42693546 + 0 NA promoter-TSS (ENSMUSG00000069727.5) protein_coding-promoter-TSS (ENSMUSG00000069727.5) -176 ENSMUSG00000069727.5 ENSMUSG00000069727 ENSMUST00000206356 Zfp975 protein_coding Interval_70206 chr17 6209431 6209739 + 0 NA intron (ENSMUSG00000034377.10, intron 6 of 13) protein_coding-intron (ENSMUSG00000034377.10, intron 6 of 13) -44318 ENSMUSG00000095869.1 ENSMUSG00000095869 ENSMUST00000179333 Ppp1r2-ps6 processed_pseudogene Interval_133777 chr6 12024350 12024655 + 0 NA intron (ENSMUSG00000029629.17, intron 16 of 17) protein_coding-intron (ENSMUSG00000029629.17, intron 16 of 17) -19877 ENSMUSG00000029629.17 ENSMUSG00000029629 ENSMUST00000214543 Phf14 protein_coding Interval_42316 chr13 12038003 12038276 + 0 NA intron (ENSMUSG00000021313.16, intron 1 of 2) protein_coding-intron (ENSMUSG00000021313.16, intron 1 of 104) 13916 ENSMUSG00000112947.1 ENSMUSG00000112947 ENSMUST00000220599 Gm47493 TEC Interval_18435 chr10 85930047 85930382 + 0 NA TTS (ENSMUSG00000085111.3) protein_coding-TTS (ENSMUSG00000085111.3) 2533 ENSMUSG00000085111.3 ENSMUSG00000085111 ENSMUST00000156605 Ascl4 protein_coding Interval_34582 chr12 5452926 5453755 + 0 NA Intergenic Intergenic 41699 ENSMUSG00000037735.7 ENSMUSG00000037735 ENSMUST00000163627 2810032G03Rik lincRNA Interval_75058 chr17 62687301 62687967 + 0 NA intron (ENSMUSG00000048915.12, intron 1 of 3) protein_coding-intron (ENSMUSG00000048915.12, intron 1 of 4) 193510 ENSMUSG00000048915.12 ENSMUSG00000048915 ENSMUST00000078839 Efna5 protein_coding Interval_165126 chr9 44697750 44698628 + 0 NA promoter-TSS (ENSMUSG00000048537.16) protein_coding-promoter-TSS (ENSMUSG00000048537.16) -14821 ENSMUSG00000111280.1 ENSMUSG00000111280 ENSMUST00000214717 Gm47239 TEC Interval_98931 chr2 156091360 156092135 + 0 NA TTS (ENSMUSG00000089824.10) protein_coding-TTS (ENSMUSG00000089824.10) -5456 ENSMUSG00000103285.1 ENSMUSG00000103285 ENSMUST00000192167 Gm37274 TEC Interval_13754 chr10 21828808 21830408 + 0 NA TTS (ENSMUSG00000097107.1) lincRNA-TTS (ENSMUSG00000097107.1) 15243 ENSMUSG00000097107.1 ENSMUSG00000097107 ENSMUST00000180731 Platr6 lincRNA Interval_165581 chr9 49860028 49860225 + 0 NA Intergenic Intergenic -34151 ENSMUSG00000094255.1 ENSMUSG00000094255 ENSMUST00000178565 Gm25633 snRNA Interval_108945 chr3 133523892 133526575 + 0 NA intron (ENSMUSG00000040943.12, intron 1 of 2) protein_coding-intron (ENSMUSG00000040943.12, intron 1 of 10) -19864 ENSMUSG00000105085.1 ENSMUSG00000105085 ENSMUST00000199268 Gm42567 antisense Interval_57179 chr15 7172382 7172884 + 0 NA intron (ENSMUSG00000054263.12, intron 7 of 15) protein_coding-intron (ENSMUSG00000054263.12, intron 7 of 19) 82019 ENSMUSG00000054263.12 ENSMUSG00000054263 ENSMUST00000171588 Lifr protein_coding Interval_69370 chr16 92519840 92520264 + 0 NA intron (ENSMUSG00000022949.9, intron 1 of 5) protein_coding-intron (ENSMUSG00000022949.9, intron 1 of 5) 33091 ENSMUSG00000116709.1 ENSMUSG00000116709 ENSMUST00000232213 Gm49722 lincRNA Interval_69324 chr16 92222380 92222665 + 0 NA Intergenic Intergenic -15034 ENSMUSG00000116878.1 ENSMUSG00000116878 ENSMUST00000231551 Gm29880 processed_transcript Interval_95657 chr2 113653413 113653623 + 0 NA intron (ENSMUSG00000044042.19, intron 14 of 17) protein_coding-intron (ENSMUSG00000044042.19, intron 13 of 16) 55032 ENSMUSG00000084798.1 ENSMUSG00000084798 ENSMUST00000123377 4930533B01Rik antisense Interval_19033 chr10 93916568 93917394 + 0 NA promoter-TSS (ENSMUSG00000087798.1) snoRNA-promoter-TSS (ENSMUSG00000087798.1) -645 ENSMUSG00000087798.1 ENSMUSG00000087798 ENSMUST00000157173 Gm25962 snoRNA Interval_139298 chr6 98067535 98067737 + 0 NA Intergenic Intergenic -54160 ENSMUSG00000107902.1 ENSMUSG00000107902 ENSMUST00000205146 Gm32592 antisense Interval_67857 chr16 58112977 58113285 + 0 NA Intergenic Intergenic -107108 ENSMUSG00000116770.1 ENSMUSG00000116770 ENSMUST00000231442 Gm49576 lincRNA Interval_166060 chr9 56166165 56166459 + 0 NA promoter-TSS (ENSMUSG00000032324.11) protein_coding-promoter-TSS (ENSMUSG00000032324.11) -835 ENSMUSG00000032324.11 ENSMUSG00000032324 ENSMUST00000216320 Tspan3 protein_coding Interval_107667 chr3 109828234 109828616 + 0 NA intron (ENSMUSG00000059857.15, intron 4 of 5) protein_coding-intron (ENSMUSG00000059857.15, intron 4 of 5) 4834 ENSMUSG00000059857.15 ENSMUSG00000059857 ENSMUST00000051253 Ntng1 protein_coding Interval_64168 chr16 8803099 8803860 + 0 NA Intergenic Intergenic -27842 ENSMUSG00000022507.6 ENSMUSG00000022507 ENSMUST00000229318 1810013L24Rik protein_coding Interval_8100 chr1 135728891 135730604 + 0 NA intron (ENSMUSG00000026421.14, intron 1 of 5) protein_coding-intron (ENSMUSG00000026421.14, intron 1 of 5) 9686 ENSMUSG00000026421.14 ENSMUSG00000026421 ENSMUST00000027677 Csrp1 protein_coding Interval_96497 chr2 125105835 125107176 + 0 NA intron (ENSMUSG00000027201.16, intron 9 of 18) protein_coding-intron (ENSMUSG00000027201.16, intron 9 of 15) 1496 ENSMUSG00000065851.1 ENSMUSG00000065851 ENSMUST00000083917 Gm22352 snRNA Interval_133936 chr6 15792465 15792848 + 0 NA intron (ENSMUSG00000041390.18, intron 4 of 4) protein_coding-intron (ENSMUSG00000041390.18, intron 4 of 4) -18667 ENSMUSG00000108046.1 ENSMUSG00000108046 ENSMUST00000204851 Gm43924 TEC Interval_52927 chr14 52089834 52090491 + 0 NA intron (ENSMUSG00000060373.15, intron 1 of 7) protein_coding-intron (ENSMUSG00000060373.15, intron 2 of 8) 13831 ENSMUSG00000060373.15 ENSMUSG00000060373 ENSMUST00000228786 Hnrnpc protein_coding Interval_23782 chr11 26189485 26189768 + 0 NA intron (ENSMUSG00000032985.15, intron 1 of 1) protein_coding-intron (ENSMUSG00000032985.15, intron 1 of 6) -12614 ENSMUSG00000099015.1 ENSMUSG00000099015 ENSMUST00000185114 Mir6372 miRNA Interval_104955 chr3 79252767 79254723 + 0 NA exon (ENSMUSG00000104585.1, exon 3 of 3) antisense-exon (ENSMUSG00000104585.1, exon 3 of 3) 32772 ENSMUSG00000062232.14 ENSMUSG00000062232 ENSMUST00000136126 Rapgef2 protein_coding Interval_83567 chr18 89830667 89831247 + 0 NA Intergenic Intergenic 97952 ENSMUSG00000092792.1 ENSMUSG00000092792 ENSMUST00000175051 Gm22694 miRNA Interval_93469 chr2 73320174 73320455 + 0 NA exon (ENSMUSG00000008226.14, exon 4 of 4) protein_coding-exon (ENSMUSG00000008226.14, exon 4 of 4) 7655 ENSMUSG00000008226.14 ENSMUSG00000008226 ENSMUST00000123621 Scrn3 protein_coding Interval_49500 chr13 112472611 112472861 + 0 NA intron (ENSMUSG00000021756.12, intron 1 of 12) protein_coding-intron (ENSMUSG00000021756.12, intron 2 of 16) -2310 ENSMUSG00000021756.12 ENSMUSG00000021756 ENSMUST00000184949 Il6st protein_coding Interval_15641 chr10 52741204 52741439 + 0 NA intron (ENSMUSG00000038602.7, intron 1 of 7) protein_coding-intron (ENSMUSG00000038602.7, intron 1 of 7) 47483 ENSMUSG00000111918.1 ENSMUSG00000111918 ENSMUST00000220050 Gm47624 TEC Interval_93636 chr2 75313236 75313932 + 0 NA TTS (ENSMUSG00000100303.3) lincRNA-TTS (ENSMUSG00000100303.3) -10359 ENSMUSG00000115959.1 ENSMUSG00000115959 ENSMUST00000229971 Gm18494 processed_pseudogene Interval_14672 chr10 38673925 38674112 + 0 NA Intergenic Intergenic -58537 ENSMUSG00000094521.1 ENSMUSG00000094521 ENSMUST00000177920 Gm22911 snRNA Interval_34489 chr12 4583359 4583665 + 0 NA Intergenic Intergenic -6756 ENSMUSG00000112505.1 ENSMUSG00000112505 ENSMUST00000218537 Gm48610 lincRNA Interval_66437 chr16 33858784 33859081 + 0 NA intron (ENSMUSG00000022817.15, intron 2 of 14) protein_coding-intron (ENSMUSG00000022817.15, intron 2 of 14) -33009 ENSMUSG00000022817.15 ENSMUSG00000022817 ENSMUST00000231409 Itgb5 protein_coding Interval_112017 chr4 33261422 33261931 + 0 NA intron (ENSMUSG00000040128.9, intron 1 of 1) protein_coding-intron (ENSMUSG00000040128.9, intron 1 of 1) -14101 ENSMUSG00000040128.9 ENSMUSG00000040128 ENSMUST00000137589 Pnrc1 protein_coding Interval_85437 chr19 26201201 26201483 + 0 NA Intergenic Intergenic 48588 ENSMUSG00000117950.1 ENSMUSG00000117950 ENSMUST00000237746 Gm50376 lincRNA Interval_116590 chr4 115919891 115920150 + 0 NA exon (ENSMUSG00000028707.15, exon 3 of 4) protein_coding-exon (ENSMUSG00000028707.15, exon 3 of 4) 19906 ENSMUSG00000028707.15 ENSMUSG00000028707 ENSMUST00000084338 Dmbx1 protein_coding Interval_50893 chr14 20566400 20566863 + 0 NA TTS (ENSMUSG00000084925.8) antisense-TTS (ENSMUSG00000084925.8) 1885 ENSMUSG00000084925.8 ENSMUSG00000084925 ENSMUST00000124940 1810062O18Rik antisense Interval_100797 chr2 172576409 172578043 + 0 NA Intergenic Intergenic 26235 ENSMUSG00000028640.11 ENSMUSG00000028640 ENSMUST00000142633 Tfap2c protein_coding Interval_57246 chr15 8114936 8115897 + 0 NA intron (ENSMUSG00000022142.8, intron 3 of 33) protein_coding-intron (ENSMUSG00000022142.8, intron 3 of 34) -16207 ENSMUSG00000039828.7 ENSMUSG00000039828 ENSMUST00000227371 Wdr70 protein_coding Interval_151030 chr7 118025614 118026662 + 0 NA Intergenic Intergenic 89118 ENSMUSG00000008683.16 ENSMUSG00000008683 ENSMUST00000128482 Rps15a protein_coding Interval_32700 chr11 109793819 109795052 + 0 NA intron (ENSMUSG00000020617.13, intron 3 of 5) protein_coding-intron (ENSMUSG00000020617.13, intron 3 of 4) -2748 ENSMUSG00000087139.1 ENSMUSG00000087139 ENSMUST00000147006 Gm11683 antisense Interval_132510 chr5 145646684 145647026 + 0 NA Intergenic Intergenic -12862 ENSMUSG00000106040.1 ENSMUSG00000106040 ENSMUST00000196626 Cyp3a63-ps unprocessed_pseudogene Interval_62308 chr15 89621451 89624037 + 0 NA Intergenic Intergenic -38202 ENSMUSG00000022621.16 ENSMUSG00000022621 ENSMUST00000171142 Rabl2 protein_coding Interval_67150 chr16 43925929 43927354 + 0 NA intron (ENSMUSG00000022701.18, intron 6 of 15) protein_coding-intron (ENSMUSG00000022701.18, intron 6 of 7) 36841 ENSMUSG00000022701.18 ENSMUSG00000022701 ENSMUST00000122440 Ccdc191 protein_coding Interval_29068 chr11 80147627 80148607 + 0 NA Intergenic Intergenic -5999 ENSMUSG00000020709.15 ENSMUSG00000020709 ENSMUST00000134118 Adap2 protein_coding Interval_148653 chr7 83859548 83860298 + 0 NA Intergenic Intergenic 5558 ENSMUSG00000109163.1 ENSMUSG00000109163 ENSMUST00000208647 3110009M11Rik processed_pseudogene Interval_170635 chr9 109797912 109798343 + 0 NA Intergenic Intergenic -7457 ENSMUSG00000104614.5 ENSMUSG00000104614 ENSMUST00000199197 Fbxw27 protein_coding Interval_51945 chr14 34159577 34160287 + 0 NA Intergenic Intergenic -7443 ENSMUSG00000048337.3 ENSMUSG00000048337 ENSMUST00000052164 Npy4r protein_coding Interval_41790 chr12 119266919 119267417 + 0 NA Intergenic Intergenic 6190 ENSMUSG00000021908.10 ENSMUSG00000021908 ENSMUST00000022467 Ncoa4-ps processed_pseudogene Interval_84824 chr19 17152018 17153081 + 0 NA intron (ENSMUSG00000039126.10, intron 1 of 8) protein_coding-intron (ENSMUSG00000039126.10, intron 9 of 19) 26902 ENSMUSG00000039126.10 ENSMUSG00000039126 ENSMUST00000224117 Prune2 protein_coding Interval_153773 chr8 8258365 8259198 + 0 NA intron (ENSMUSG00000109127.1, intron 2 of 5) lincRNA-intron (ENSMUSG00000109127.1, intron 2 of 5) -76296 ENSMUSG00000109056.1 ENSMUSG00000109056 ENSMUST00000208485 A630009H07Rik lincRNA Interval_106080 chr3 92688975 92689864 + 0 NA promoter-TSS (ENSMUSG00000091421.3) processed_pseudogene-promoter-TSS (ENSMUSG00000091421.3) -7 ENSMUSG00000091421.3 ENSMUSG00000091421 ENSMUST00000169025 Gm4202 processed_pseudogene Interval_135180 chr6 37327518 37328256 + 0 NA exon (ENSMUSG00000038648.5, exon 12 of 12) protein_coding-exon (ENSMUSG00000038648.5, exon 12 of 12) 8648 ENSMUSG00000038648.5 ENSMUSG00000038648 ENSMUST00000128534 Creb3l2 protein_coding Interval_44237 chr13 42709191 42710575 + 0 NA intron (ENSMUSG00000054728.17, intron 3 of 13) protein_coding-intron (ENSMUSG00000054728.17, intron 1 of 11) 78375 ENSMUSG00000089710.1 ENSMUSG00000089710 ENSMUST00000160241 Gm15810 antisense Interval_133699 chr6 8875636 8876100 + 0 NA Intergenic Intergenic -72563 ENSMUSG00000046178.3 ENSMUSG00000046178 ENSMUST00000060369 Nxph1 protein_coding Interval_87801 chr19 55956059 55956295 + 0 NA Intergenic Intergenic -56352 ENSMUSG00000117833.1 ENSMUSG00000117833 ENSMUST00000236015 Gm50135 processed_pseudogene Interval_2439 chr1 39359296 39359859 + 0 NA intron (ENSMUSG00000026077.15, intron 19 of 20) protein_coding-intron (ENSMUSG00000026077.15, intron 19 of 20) -8572 ENSMUSG00000073702.11 ENSMUSG00000073702 ENSMUST00000191855 Rpl31 protein_coding Interval_169881 chr9 102714958 102715810 + 0 NA Intergenic Intergenic -3184 ENSMUSG00000032531.15 ENSMUSG00000032531 ENSMUST00000136934 Amotl2 protein_coding Interval_153122 chr7 141474903 141476916 + 0 NA promoter-TSS (ENSMUSG00000038489.8) protein_coding-promoter-TSS (ENSMUSG00000038489.8) -777 ENSMUSG00000038489.8 ENSMUSG00000038489 ENSMUST00000043870 Polr2l protein_coding Interval_165199 chr9 45211748 45212277 + 0 NA intron (ENSMUSG00000091996.8, intron 1 of 4) protein_coding-intron (ENSMUSG00000091996.8, intron 1 of 4) -7922 ENSMUSG00000032091.15 ENSMUSG00000032091 ENSMUST00000163945 Tmprss4 protein_coding Interval_168031 chr9 75481301 75481660 + 0 NA exon (ENSMUSG00000109032.1, exon 7 of 9) transcribed_unprocessed_pseudogene-exon (ENSMUSG00000109032.1, exon 7 of 9) -1371 ENSMUSG00000109032.1 ENSMUSG00000109032 ENSMUST00000209180 Gm7972 transcribed_unprocessed_pseudogene Interval_171306 chr9 116242160 116243829 + 0 NA intron (ENSMUSG00000111324.1, intron 3 of 3) lincRNA-intron (ENSMUSG00000111324.1, intron 3 of 3) 24192 ENSMUSG00000111324.1 ENSMUSG00000111324 ENSMUST00000217302 Gm31410 lincRNA Interval_151369 chr7 121864764 121865687 + 0 NA intron (ENSMUSG00000030873.9, intron 1 of 12) protein_coding-intron (ENSMUSG00000030873.9, intron 1 of 12) 17292 ENSMUSG00000034951.10 ENSMUSG00000034951 ENSMUST00000148634 Cog7 protein_coding Interval_23482 chr11 22854572 22855039 + 0 NA intron (ENSMUSG00000098650.1, intron 2 of 2) protein_coding-intron (ENSMUSG00000051650.11, intron 1 of 1) -4126 ENSMUSG00000092626.1 ENSMUSG00000092626 ENSMUST00000174568 9130230N09Rik processed_transcript Interval_114505 chr4 81451690 81452593 + 0 NA Intergenic Intergenic -9497 ENSMUSG00000028402.18 ENSMUSG00000028402 ENSMUST00000142273 Mpdz protein_coding Interval_64754 chr16 15226792 15227176 + 0 NA Intergenic Intergenic 8140 ENSMUSG00000116213.1 ENSMUSG00000116213 ENSMUST00000228992 Gm5404 processed_pseudogene Interval_17432 chr10 76607539 76608037 + 0 NA exon (ENSMUSG00000020241.13, exon 17 of 28) protein_coding-exon (ENSMUSG00000020241.13, exon 17 of 28) 15537 ENSMUSG00000020241.13 ENSMUSG00000020241 ENSMUST00000137365 Col6a2 protein_coding Interval_109115 chr3 135896624 135897342 + 0 NA Intergenic Intergenic 5858 ENSMUSG00000106141.1 ENSMUSG00000106141 ENSMUST00000199246 Gm18330 processed_pseudogene Interval_53027 chr14 53637822 53638109 + 0 NA Intergenic Intergenic -2981 ENSMUSG00000095711.5 ENSMUSG00000095711 ENSMUST00000184874 Trav14-2 TR_V_gene Interval_20834 chr10 121394846 121396106 + 0 NA exon (ENSMUSG00000034707.7, exon 14 of 14) protein_coding-exon (ENSMUSG00000034707.7, exon 14 of 14) -5237 ENSMUSG00000112209.1 ENSMUSG00000112209 ENSMUST00000218038 Gm18730 processed_pseudogene Interval_108306 chr3 123522030 123522906 + 0 NA Intergenic Intergenic -11794 ENSMUSG00000104670.1 ENSMUSG00000104670 ENSMUST00000196009 Gm9369 processed_pseudogene Interval_167877 chr9 73240074 73240366 + 0 NA intron (ENSMUSG00000098875.1, intron 3 of 3) lincRNA-intron (ENSMUSG00000098875.1, intron 3 of 3) 47737 ENSMUSG00000098875.1 ENSMUSG00000098875 ENSMUST00000183507 Gm27211 lincRNA Interval_103119 chr3 35629975 35631084 + 0 NA intron (ENSMUSG00000105662.4, intron 12 of 18) lincRNA-intron (ENSMUSG00000105662.4, intron 2 of 3) 435 ENSMUSG00000105662.4 ENSMUSG00000105662 ENSMUST00000196349 Gm6639 lincRNA Interval_25248 chr11 45880974 45881201 + 0 NA intron (ENSMUSG00000006169.20, intron 1 of 11) protein_coding-intron (ENSMUSG00000006169.20, intron 1 of 11) -1310 ENSMUSG00000006169.20 ENSMUSG00000006169 ENSMUST00000133715 Clint1 protein_coding Interval_114252 chr4 70117608 70118309 + 0 NA Intergenic Intergenic 70801 ENSMUSG00000082368.1 ENSMUSG00000082368 ENSMUST00000118903 Gm11225 processed_pseudogene Interval_135080 chr6 35229400 35229629 + 0 NA intron (ENSMUSG00000038759.15, intron 5 of 9) protein_coding-intron (ENSMUSG00000038759.15, intron 30 of 42) -14081 ENSMUSG00000087808.1 ENSMUSG00000087808 ENSMUST00000157183 Gm23435 snRNA Interval_75015 chr17 60733126 60733505 + 0 NA Intergenic Intergenic -5918 ENSMUSG00000117288.1 ENSMUSG00000117288 ENSMUST00000233362 Gm49856 processed_pseudogene Interval_38341 chr12 77531093 77531844 + 0 NA Intergenic Intergenic -5070 ENSMUSG00000111939.1 ENSMUSG00000111939 ENSMUST00000219567 Gm48177 processed_pseudogene Interval_99817 chr2 165111961 165112672 + 0 NA TTS (ENSMUSG00000053166.14) protein_coding-TTS (ENSMUSG00000053166.14) -21566 ENSMUSG00000078935.1 ENSMUSG00000078935 ENSMUST00000109304 1700025C18Rik protein_coding Interval_111601 chr4 24409795 24410081 + 0 NA Intergenic Intergenic -13539 ENSMUSG00000081148.1 ENSMUSG00000081148 ENSMUST00000121241 Gm11891 processed_pseudogene Interval_38961 chr12 84137338 84137725 + 0 NA TTS (ENSMUSG00000042523.12) protein_coding-TTS (ENSMUSG00000042523.12) 10958 ENSMUSG00000054383.2 ENSMUSG00000054383 ENSMUST00000061425 Pnma1 protein_coding Interval_120928 chr4 151700604 151701691 + 0 NA intron (ENSMUSG00000014592.21, intron 2 of 7) protein_coding-intron (ENSMUSG00000014592.21, intron 3 of 23) 160557 ENSMUSG00000014592.21 ENSMUSG00000014592 ENSMUST00000135780 Camta1 protein_coding Interval_86378 chr19 39523748 39524172 + 0 NA intron (ENSMUSG00000025003.6, intron 3 of 8) protein_coding-intron (ENSMUSG00000025003.6, intron 3 of 8) 13098 ENSMUSG00000025003.6 ENSMUSG00000025003 ENSMUST00000025968 Cyp2c39 protein_coding Interval_146365 chr7 45537542 45538994 + 0 NA exon (ENSMUSG00000040428.19, exon 8 of 20) protein_coding-exon (ENSMUSG00000040428.19, exon 8 of 20) 8275 ENSMUSG00000040428.19 ENSMUSG00000040428 ENSMUST00000211106 Plekha4 protein_coding Interval_62735 chr15 96537426 96537693 + 0 NA Intergenic Intergenic 39657 ENSMUSG00000116160.1 ENSMUSG00000116160 ENSMUST00000229356 Gm41392 lincRNA Interval_122389 chr5 21907630 21907924 + 0 NA intron (ENSMUSG00000042453.14, intron 57 of 64) protein_coding-intron (ENSMUSG00000042453.14, intron 57 of 63) -3154 ENSMUSG00000073152.4 ENSMUSG00000073152 ENSMUST00000084713 Gm10475 antisense Interval_50158 chr14 8346297 8347252 + 0 NA Intergenic Intergenic -20666 ENSMUSG00000114532.1 ENSMUSG00000114532 ENSMUST00000225127 2610318M16Rik antisense Interval_46210 chr13 62529545 62530763 + 0 NA intron (ENSMUSG00000074865.11, intron 1 of 4) protein_coding-intron (ENSMUSG00000055228.8, intron 1 of 2) -1194 ENSMUSG00000113428.1 ENSMUSG00000113428 ENSMUST00000221988 Gm7664 processed_pseudogene Interval_1601 chr1 29427121 29427480 + 0 NA Intergenic Intergenic 5812 ENSMUSG00000099257.1 ENSMUSG00000099257 ENSMUST00000183870 Mir6342 miRNA Interval_124247 chr5 42135810 42136175 + 0 NA intron (ENSMUSG00000067285.4, intron 1 of 2) protein_coding-intron (ENSMUSG00000067285.4, intron 1 of 2) 68032 ENSMUSG00000067285.4 ENSMUSG00000067285 ENSMUST00000087332 Gm16223 protein_coding Interval_40607 chr12 105995178 105996127 + 0 NA Intergenic Intergenic -30155 ENSMUSG00000021115.15 ENSMUSG00000021115 ENSMUST00000220629 Vrk1 protein_coding Interval_112746 chr4 44569811 44570126 + 0 NA TTS (ENSMUSG00000014030.15) protein_coding-TTS (ENSMUSG00000014030.15) 37600 ENSMUSG00000092761.1 ENSMUSG00000092761 ENSMUST00000175020 Mir5120 miRNA Interval_133143 chr5 150157472 150158122 + 0 NA intron (ENSMUSG00000056602.12, intron 1 of 6) protein_coding-intron (ENSMUSG00000056602.12, intron 1 of 4) -75002 ENSMUSG00000107384.1 ENSMUSG00000107384 ENSMUST00000202037 Gm42557 antisense Interval_20257 chr10 116480784 116481263 + 0 NA Intergenic Intergenic -7588 ENSMUSG00000054934.10 ENSMUSG00000054934 ENSMUST00000087965 Kcnmb4 protein_coding Interval_29015 chr11 79921009 79921551 + 0 NA Intergenic Intergenic 15299 ENSMUSG00000082252.1 ENSMUSG00000082252 ENSMUST00000122438 Gm11204 processed_pseudogene Interval_99324 chr2 159039792 159040283 + 0 NA Intergenic Intergenic -29826 ENSMUSG00000104628.1 ENSMUSG00000104628 ENSMUST00000196974 Gm44319 miRNA Interval_5890 chr1 93000531 93000989 + 0 NA intron (ENSMUSG00000100021.1, intron 1 of 2) processed_pseudogene-intron (ENSMUSG00000100021.1, intron 1 of 2) 2011 ENSMUSG00000100021.1 ENSMUSG00000100021 ENSMUST00000191179 Gm18697 processed_pseudogene Interval_71668 chr17 25264070 25264962 + 0 NA TTS (ENSMUSG00000015120.15) protein_coding-TTS (ENSMUSG00000015120.15) 1353 ENSMUSG00000015120.15 ENSMUSG00000015120 ENSMUST00000172462 Ube2i protein_coding Interval_45157 chr13 52837520 52837800 + 0 NA intron (ENSMUSG00000021460.17, intron 8 of 9) protein_coding-intron (ENSMUSG00000021460.17, intron 9 of 9) 75286 ENSMUSG00000021460.17 ENSMUSG00000021460 ENSMUST00000151469 Auh protein_coding Interval_4958 chr1 82949402 82949595 + 0 NA Intergenic Intergenic -6110 ENSMUSG00000113084.1 ENSMUSG00000113084 ENSMUST00000222600 A030003K21Rik protein_coding Interval_109357 chr3 139631360 139631635 + 0 NA intron (ENSMUSG00000047940.13, intron 12 of 13) protein_coding-intron (ENSMUSG00000047940.13, intron 12 of 13) -17882 ENSMUSG00000106574.1 ENSMUSG00000106574 ENSMUST00000199447 Gm2451 processed_pseudogene Interval_37267 chr12 63908978 63909433 + 0 NA Intergenic Intergenic -18749 ENSMUSG00000113684.1 ENSMUSG00000113684 ENSMUST00000222419 Gm48418 processed_pseudogene Interval_168055 chr9 75683571 75684461 + 0 NA promoter-TSS (ENSMUSG00000032181.7) protein_coding-promoter-TSS (ENSMUSG00000032181.7) -41 ENSMUSG00000032181.7 ENSMUSG00000032181 ENSMUST00000215722 Scg3 protein_coding Interval_10136 chr1 166023878 166024820 + 0 NA intron (ENSMUSG00000097196.2, intron 1 of 1) lincRNA-intron (ENSMUSG00000097196.2, intron 1 of 1) 19342 ENSMUSG00000102890.1 ENSMUSG00000102890 ENSMUST00000195801 Gm7626 processed_pseudogene Interval_89612 chr2 23225097 23225882 + 0 NA intron (ENSMUSG00000026774.11, intron 3 of 10) protein_coding-intron (ENSMUSG00000026774.11, intron 3 of 10) -9747 ENSMUSG00000084098.1 ENSMUSG00000084098 ENSMUST00000118834 Gm13422 processed_pseudogene Interval_121928 chr5 9954659 9954939 + 0 NA Intergenic Intergenic -13875 ENSMUSG00000106661.1 ENSMUSG00000106661 ENSMUST00000196361 Gm42832 processed_pseudogene Interval_99798 chr2 164967854 164968893 + 0 NA promoter-TSS (ENSMUSG00000017740.17) protein_coding-promoter-TSS (ENSMUSG00000017740.17) 132 ENSMUSG00000017740.17 ENSMUSG00000017740 ENSMUST00000137302 Slc12a5 protein_coding Interval_137610 chr6 75433806 75434248 + 0 NA Intergenic Intergenic -50005 ENSMUSG00000107918.1 ENSMUSG00000107918 ENSMUST00000204951 Gm8999 processed_pseudogene Interval_47756 chr13 92368343 92370269 + 0 NA intron (ENSMUSG00000021707.5, intron 5 of 5) protein_coding-intron (ENSMUSG00000021707.5, intron 5 of 5) -14307 ENSMUSG00000014850.15 ENSMUSG00000014850 ENSMUST00000187424 Msh3 protein_coding Interval_105024 chr3 79854085 79855411 + 0 NA Intergenic Intergenic -11836 ENSMUSG00000027956.11 ENSMUSG00000027956 ENSMUST00000194338 Tmem144 protein_coding Interval_1285 chr1 19205656 19206361 + 0 NA Intergenic Intergenic -6298 ENSMUSG00000025927.13 ENSMUSG00000025927 ENSMUST00000186972 Tfap2b protein_coding Interval_68018 chr16 63856205 63857840 + 0 NA intron (ENSMUSG00000052504.7, intron 1 of 6) protein_coding-intron (ENSMUSG00000052504.7, intron 1 of 16) 7135 ENSMUSG00000052504.7 ENSMUSG00000052504 ENSMUST00000232370 Epha3 protein_coding Interval_114413 chr4 75554199 75554794 + 0 NA Intergenic Intergenic 173736 ENSMUSG00000084026.1 ENSMUSG00000084026 ENSMUST00000120554 Gm11259 processed_pseudogene Interval_110366 chr3 157467704 157467981 + 0 NA Intergenic Intergenic 57825 ENSMUSG00000104555.1 ENSMUSG00000104555 ENSMUST00000197739 Gm5983 processed_pseudogene Interval_6164 chr1 98440314 98440605 + 0 NA intron (ENSMUSG00000026336.13, intron 4 of 14) protein_coding-intron (ENSMUSG00000026336.13, intron 4 of 13) -17309 ENSMUSG00000089791.1 ENSMUSG00000089791 ENSMUST00000160287 Gm3555 processed_pseudogene Interval_70133 chr17 5672680 5672911 + 0 NA intron (ENSMUSG00000034265.8, intron 2 of 8) protein_coding-intron (ENSMUSG00000034265.8, intron 2 of 8) -126696 ENSMUSG00000096965.7 ENSMUSG00000096965 ENSMUST00000181392 3300005D01Rik lincRNA Interval_88127 chr19 59418143 59418752 + 0 NA Intergenic Intergenic 28663 ENSMUSG00000110210.1 ENSMUSG00000110210 ENSMUST00000211358 Gm33756 lincRNA Interval_153714 chr8 5003136 5003877 + 0 NA Intergenic Intergenic 65871 ENSMUSG00000096219.1 ENSMUSG00000096219 ENSMUST00000180091 n-R5s93 rRNA Interval_50850 chr14 20200889 20201939 + 0 NA Intergenic Intergenic -1302 ENSMUSG00000087916.1 ENSMUSG00000087916 ENSMUST00000157291 Gm24912 snoRNA Interval_161022 chr8 116959750 116960097 + 0 NA exon (ENSMUSG00000047388.10, exon 4 of 4) protein_coding-exon (ENSMUSG00000047388.10, exon 4 of 4) 16530 ENSMUSG00000047388.10 ENSMUSG00000047388 ENSMUST00000109099 Atmin protein_coding Interval_124453 chr5 48138848 48139254 + 0 NA intron (ENSMUSG00000031558.15, intron 3 of 8) protein_coding-intron (ENSMUSG00000031558.15, intron 4 of 35) 11967 ENSMUSG00000105502.1 ENSMUSG00000105502 ENSMUST00000197562 Gm42536 TEC Interval_165198 chr9 45196001 45196857 + 0 NA intron (ENSMUSG00000091996.8, intron 1 of 4) protein_coding-intron (ENSMUSG00000091996.8, intron 1 of 4) 663 ENSMUSG00000091996.8 ENSMUSG00000091996 ENSMUST00000171799 BC049352 protein_coding Interval_145035 chr7 29558528 29559537 + 0 NA intron (ENSMUSG00000046958.10, intron 1 of 4) transcribed_unitary_pseudogene-intron (ENSMUSG00000046958.10, intron 1 of 4) 453 ENSMUSG00000046958.10 ENSMUSG00000046958 ENSMUST00000053635 4930432E11Rik transcribed_unitary_pseudogene Interval_14650 chr10 37841533 37842390 + 0 NA Intergenic Intergenic -89719 ENSMUSG00000096080.1 ENSMUSG00000096080 ENSMUST00000175235 Gm24710 miRNA Interval_69190 chr16 91224850 91227603 + 0 NA intron (ENSMUSG00000039830.9, intron 1 of 1) protein_coding-intron (ENSMUSG00000039830.9, intron 1 of 1) 769 ENSMUSG00000039830.9 ENSMUSG00000039830 ENSMUST00000035608 Olig2 protein_coding Interval_152663 chr7 135863617 135864249 + 0 NA Intergenic Intergenic -9485 ENSMUSG00000110078.1 ENSMUSG00000110078 ENSMUST00000211237 Gm45241 lincRNA Interval_118416 chr4 131272241 131272507 + 0 NA Intergenic Intergenic 33097 ENSMUSG00000088041.1 ENSMUSG00000088041 ENSMUST00000157416 Gm25261 snoRNA Interval_10046 chr1 165326837 165327438 + 0 NA TTS (ENSMUSG00000040836.15) protein_coding-TTS (ENSMUSG00000040836.15) 31348 ENSMUSG00000040836.15 ENSMUSG00000040836 ENSMUST00000111450 Gpr161 protein_coding Interval_1263 chr1 18639289 18640080 + 0 NA Intergenic Intergenic -68744 ENSMUSG00000101306.1 ENSMUSG00000101306 ENSMUST00000189030 Gm5252 processed_pseudogene Interval_88484 chr2 5496767 5498236 + 0 NA intron (ENSMUSG00000039145.16, intron 2 of 2) protein_coding-intron (ENSMUSG00000039145.16, intron 2 of 10) -106070 ENSMUSG00000082013.1 ENSMUSG00000082013 ENSMUST00000117145 Gm13216 processed_pseudogene Interval_93259 chr2 71534257 71535396 + 0 NA TTS (ENSMUSG00000041911.3) protein_coding-TTS (ENSMUSG00000041911.3) 2984 ENSMUSG00000084946.2 ENSMUSG00000084946 ENSMUST00000137251 Dlx1as antisense Interval_134147 chr6 21949230 21950491 + 0 NA promoter-TSS (ENSMUSG00000029670.12) protein_coding-promoter-TSS (ENSMUSG00000029670.12) 175 ENSMUSG00000029670.12 ENSMUSG00000029670 ENSMUST00000141689 Ing3 protein_coding Interval_90226 chr2 29124625 29125702 + 0 NA promoter-TSS (ENSMUSG00000043535.13) protein_coding-promoter-TSS (ENSMUSG00000043535.13) -723 ENSMUSG00000043535.13 ENSMUSG00000043535 ENSMUST00000145422 Setx protein_coding Interval_23345 chr11 21612637 21612854 + 0 NA intron (ENSMUSG00000020319.9, intron 1 of 8) protein_coding-intron (ENSMUSG00000020319.9, intron 1 of 17) -40811 ENSMUSG00000020321.16 ENSMUSG00000020321 ENSMUST00000125302 Mdh1 protein_coding Interval_118818 chr4 133872754 133873299 + 0 NA promoter-TSS (ENSMUSG00000003644.17) protein_coding-promoter-TSS (ENSMUSG00000003644.17) 544 ENSMUSG00000085009.1 ENSMUSG00000085009 ENSMUST00000134799 Gm12977 antisense Interval_84727 chr19 15977173 15977565 + 0 NA intron (ENSMUSG00000041491.8, intron 5 of 13) protein_coding-intron (ENSMUSG00000041491.8, intron 5 of 14) 7324 ENSMUSG00000041491.8 ENSMUSG00000041491 ENSMUST00000236749 Cep78 protein_coding Interval_11919 chr1 187137477 187137684 + 0 NA intron (ENSMUSG00000026611.17, intron 1 of 1) protein_coding-intron (ENSMUSG00000026611.17, intron 6 of 9) 5517 ENSMUSG00000026611.17 ENSMUSG00000026611 ENSMUST00000183469 Spata17 protein_coding Interval_97240 chr2 132522945 132523477 + 0 NA intron (ENSMUSG00000086379.7, intron 3 of 3) antisense-intron (ENSMUSG00000086379.7, intron 4 of 4) -22063 ENSMUSG00000086250.1 ENSMUSG00000086250 ENSMUST00000134264 Gm14095 lincRNA Interval_14011 chr10 25441300 25441486 + 0 NA promoter-TSS (ENSMUSG00000019978.16) protein_coding-promoter-TSS (ENSMUSG00000019978.16) -25208 ENSMUSG00000112445.1 ENSMUSG00000112445 ENSMUST00000219193 Gm47830 processed_pseudogene Interval_88877 chr2 11949294 11949545 + 0 NA Intergenic Intergenic 49337 ENSMUSG00000103542.1 ENSMUSG00000103542 ENSMUST00000193884 Gm34768 unprocessed_pseudogene Interval_83330 chr18 84267239 84267464 + 0 NA intron (ENSMUSG00000048410.17, intron 8 of 8) protein_coding-intron (ENSMUSG00000048410.17, intron 2 of 2) 64427 ENSMUSG00000118385.1 ENSMUSG00000118385 ENSMUST00000238064 Gm50311 antisense Interval_59478 chr15 53777694 53777984 + 0 NA intron (ENSMUSG00000058656.13, intron 2 of 4) protein_coding-intron (ENSMUSG00000058656.13, intron 2 of 4) -107067 ENSMUSG00000072584.2 ENSMUSG00000072584 ENSMUST00000100666 Gm7489 protein_coding Interval_93802 chr2 77012113 77012760 + 0 NA exon (ENSMUSG00000044033.16, exon 23 of 23) protein_coding-exon (ENSMUSG00000044033.16, exon 23 of 23) 10260 ENSMUSG00000044033.16 ENSMUSG00000044033 ENSMUST00000111833 Ccdc141 protein_coding Interval_117986 chr4 127472391 127472686 + 0 NA Intergenic Intergenic -2364 ENSMUSG00000087470.2 ENSMUSG00000087470 ENSMUST00000146587 A630031M04Rik lincRNA Interval_80694 chr18 46381006 46381617 + 0 NA intron (ENSMUSG00000118002.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000118002.1, intron 1 of 1) 13946 ENSMUSG00000095541.1 ENSMUSG00000095541 ENSMUST00000116705 Gm24617 miRNA Interval_42134 chr13 9084437 9084631 + 0 NA Intergenic Intergenic -8083 ENSMUSG00000113543.1 ENSMUSG00000113543 ENSMUST00000221989 Gm36264 lincRNA Interval_162191 chr8 125818454 125818844 + 0 NA intron (ENSMUSG00000060212.13, intron 5 of 18) protein_coding-intron (ENSMUSG00000060212.13, intron 20 of 33) 10384 ENSMUSG00000060212.13 ENSMUSG00000060212 ENSMUST00000187772 Pcnx2 protein_coding Interval_98099 chr2 148048400 148049075 + 0 NA Intergenic Intergenic -1841 ENSMUSG00000037025.11 ENSMUSG00000037025 ENSMUST00000146242 Foxa2 protein_coding Interval_66379 chr16 33492009 33492265 + 0 NA intron (ENSMUSG00000022811.17, intron 6 of 7) protein_coding-intron (ENSMUSG00000022811.17, intron 7 of 8) 111274 ENSMUSG00000022811.17 ENSMUSG00000022811 ENSMUST00000089677 Zfp148 protein_coding Interval_146370 chr7 45564729 45565161 + 0 NA intron (ENSMUSG00000030825.19, intron 1 of 2) protein_coding-intron (ENSMUSG00000030825.19, intron 6 of 8) 5739 ENSMUSG00000030825.19 ENSMUSG00000030825 ENSMUST00000209551 Hsd17b14 protein_coding Interval_113554 chr4 56559867 56560147 + 0 NA Intergenic Intergenic 119028 ENSMUSG00000077663.1 ENSMUSG00000077663 ENSMUST00000104475 Gm26144 snoRNA Interval_56536 chr14 120125272 120125913 + 0 NA intron (ENSMUSG00000115146.1, intron 4 of 8) lincRNA-intron (ENSMUSG00000115146.1, intron 4 of 8) 5011 ENSMUSG00000114983.1 ENSMUSG00000114983 ENSMUST00000227459 Gm48997 lincRNA Interval_75362 chr17 66131123 66131815 + 0 NA TTS (ENSMUSG00000035842.10) protein_coding-TTS (ENSMUSG00000035842.10) -12240 ENSMUSG00000035842.10 ENSMUSG00000035842 ENSMUST00000226095 Ddx11 protein_coding Interval_77777 chr18 3433447 3433633 + 0 NA promoter-TSS (ENSMUSG00000024231.15) protein_coding-promoter-TSS (ENSMUSG00000024231.15) -13274 ENSMUSG00000117370.1 ENSMUSG00000117370 ENSMUST00000235096 Gm6235 processed_pseudogene Interval_43724 chr13 35775609 35776284 + 0 NA intron (ENSMUSG00000114373.1, intron 1 of 1) protein_coding-intron (ENSMUSG00000059288.14, intron 3 of 9) 950 ENSMUSG00000114373.1 ENSMUSG00000114373 ENSMUST00000224745 Gm48708 antisense Interval_120559 chr4 149370863 149371961 + 0 NA intron (ENSMUSG00000028960.20, intron 10 of 29) protein_coding-intron (ENSMUSG00000028960.20, intron 7 of 9) 23527 ENSMUSG00000085819.7 ENSMUSG00000085819 ENSMUST00000141259 Ube4bos1 antisense Interval_51340 chr14 26528220 26528427 + 0 NA intron (ENSMUSG00000021870.17, intron 1 of 22) protein_coding-intron (ENSMUSG00000021870.17, intron 1 of 22) 13769 ENSMUSG00000078128.1 ENSMUSG00000078128 ENSMUST00000104927 Gm2178 processed_pseudogene Interval_119056 chr4 135251552 135252273 + 0 NA intron (ENSMUSG00000037242.8, intron 1 of 2) protein_coding-intron (ENSMUSG00000037242.8, intron 1 of 5) 20902 ENSMUSG00000037242.8 ENSMUSG00000037242 ENSMUST00000143370 Clic4 protein_coding Interval_78888 chr18 21159854 21160120 + 0 NA intron (ENSMUSG00000042680.8, intron 3 of 4) protein_coding-intron (ENSMUSG00000042680.8, intron 3 of 5) -82878 ENSMUSG00000062962.5 ENSMUSG00000062962 ENSMUST00000084199 Gm6378 processed_pseudogene Interval_166556 chr9 60869779 60870583 + 0 NA TTS (ENSMUSG00000034485.10) protein_coding-TTS (ENSMUSG00000034485.10) -31982 ENSMUSG00000052143.8 ENSMUSG00000052143 ENSMUST00000063858 Gm9869 antisense Interval_29567 chr11 84943520 84945503 + 0 NA Intergenic Intergenic -13314 ENSMUSG00000000805.18 ENSMUSG00000000805 ENSMUST00000108076 Car4 protein_coding Interval_128215 chr5 111799441 111800843 + 0 NA intron (ENSMUSG00000105376.4, intron 1 of 2) lincRNA-intron (ENSMUSG00000105376.4, intron 1 of 2) 6755 ENSMUSG00000105376.4 ENSMUSG00000105376 ENSMUST00000200641 Gm36535 lincRNA Interval_83324 chr18 84209959 84210538 + 0 NA TTS (ENSMUSG00000118385.1) antisense-TTS (ENSMUSG00000118385.1) 7324 ENSMUSG00000118385.1 ENSMUSG00000118385 ENSMUST00000238064 Gm50311 antisense Interval_68524 chr16 78375913 78377545 + 0 NA promoter-TSS (ENSMUSG00000022863.15) protein_coding-promoter-TSS (ENSMUSG00000022863.15) -3393 ENSMUSG00000022863.15 ENSMUSG00000022863 ENSMUST00000148124 Btg3 protein_coding Interval_155934 chr8 41108973 41109261 + 0 NA intron (ENSMUSG00000045636.16, intron 1 of 1) protein_coding-intron (ENSMUSG00000045636.16, intron 1 of 13) 56007 ENSMUSG00000085672.1 ENSMUSG00000085672 ENSMUST00000125903 Gm16193 antisense Interval_151138 chr7 118765945 118766445 + 0 NA intron (ENSMUSG00000030982.19, intron 1 of 23) protein_coding-intron (ENSMUSG00000030982.19, intron 1 of 23) -1822 ENSMUSG00000109303.1 ENSMUSG00000109303 ENSMUST00000208351 Gm44549 sense_intronic Interval_142997 chr6 148211484 148212572 + 0 NA promoter-TSS (ENSMUSG00000030304.11) protein_coding-promoter-TSS (ENSMUSG00000030304.11) -225 ENSMUSG00000107402.1 ENSMUSG00000107402 ENSMUST00000203932 4732416N19Rik TEC Interval_168947 chr9 89494535 89494883 + 0 NA Intergenic Intergenic 65675 ENSMUSG00000111806.1 ENSMUSG00000111806 ENSMUST00000217127 Gm47403 lincRNA Interval_138253 chr6 86630796 86631163 + 0 NA Intergenic Intergenic 2815 ENSMUSG00000033508.7 ENSMUSG00000033508 ENSMUST00000043400 Asprv1 protein_coding Interval_86180 chr19 37576727 37577433 + 0 NA exon (ENSMUSG00000053799.8, exon 6 of 22) protein_coding-exon (ENSMUSG00000053799.8, exon 6 of 22) 56201 ENSMUSG00000053799.8 ENSMUSG00000053799 ENSMUST00000238817 Exoc6 protein_coding Interval_112756 chr4 44635855 44636226 + 0 NA intron (ENSMUSG00000014030.15, intron 1 of 5) protein_coding-intron (ENSMUSG00000014030.15, intron 6 of 9) 9683 ENSMUSG00000014030.15 ENSMUSG00000014030 ENSMUST00000191036 Pax5 protein_coding Interval_147381 chr7 66292581 66293969 + 0 NA intron (ENSMUSG00000015133.17, intron 15 of 33) protein_coding-intron (ENSMUSG00000015133.17, intron 15 of 33) -15920 ENSMUSG00000109119.1 ENSMUSG00000109119 ENSMUST00000207140 Gm44752 antisense Interval_15766 chr10 56353685 56354019 + 0 NA TTS (ENSMUSG00000071303.4) processed_pseudogene-TTS (ENSMUSG00000071303.4) 1222 ENSMUSG00000071303.4 ENSMUSG00000071303 ENSMUST00000172445 Rps8-ps1 processed_pseudogene Interval_14817 chr10 40256589 40259354 + 0 NA promoter-TSS (ENSMUSG00000019837.8) protein_coding-promoter-TSS (ENSMUSG00000019837.8) -300 ENSMUSG00000019837.8 ENSMUSG00000019837 ENSMUST00000217141 Gtf3c6 protein_coding Interval_122718 chr5 24869651 24870266 + 0 NA intron (ENSMUSG00000028944.14, intron 9 of 9) protein_coding-intron (ENSMUSG00000028944.14, intron 13 of 15) -3586 ENSMUSG00000087314.1 ENSMUSG00000087314 ENSMUST00000123610 Prkag2os2 antisense Interval_130514 chr5 128515280 128515586 + 0 NA TTS (ENSMUSG00000104980.1) lincRNA-TTS (ENSMUSG00000104980.1) 2201 ENSMUSG00000104980.1 ENSMUSG00000104980 ENSMUST00000199120 4930573I07Rik lincRNA Interval_47323 chr13 81347287 81347970 + 0 NA intron (ENSMUSG00000069170.14, intron 21 of 27) protein_coding-intron (ENSMUSG00000069170.14, intron 83 of 89) 3998 ENSMUSG00000069170.14 ENSMUSG00000069170 ENSMUST00000132045 Adgrv1 protein_coding Interval_103933 chr3 55111868 55112895 + 0 NA promoter-TSS (ENSMUSG00000036580.15) protein_coding-promoter-TSS (ENSMUSG00000036580.15) 243 ENSMUSG00000036580.15 ENSMUSG00000036580 ENSMUST00000146109 Spg20 protein_coding Interval_108943 chr3 133515224 133516306 + 0 NA intron (ENSMUSG00000040943.12, intron 1 of 2) protein_coding-intron (ENSMUSG00000040943.12, intron 1 of 10) -29332 ENSMUSG00000105085.1 ENSMUSG00000105085 ENSMUST00000199268 Gm42567 antisense Interval_76627 chr17 82948400 82948721 + 0 NA Intergenic Intergenic -7436 ENSMUSG00000117472.1 ENSMUSG00000117472 ENSMUST00000234284 Gm4601 processed_pseudogene Interval_71860 chr17 26580764 26581286 + 0 NA promoter-TSS (ENSMUSG00000094969.1) miRNA-promoter-TSS (ENSMUSG00000094969.1) -98 ENSMUSG00000094969.1 ENSMUSG00000094969 ENSMUST00000178795 Gm22420 miRNA Interval_154884 chr8 24607664 24608054 + 0 NA intron (ENSMUSG00000031552.13, intron 1 of 1) protein_coding-intron (ENSMUSG00000031552.13, intron 19 of 19) -12193 ENSMUSG00000031551.12 ENSMUSG00000031551 ENSMUST00000033956 Ido1 protein_coding Interval_67973 chr16 62317159 62317500 + 0 NA Intergenic Intergenic 166620 ENSMUSG00000118558.1 ENSMUSG00000118558 ENSMUST00000239089 CT010569.1 processed_pseudogene Interval_140021 chr6 113468965 113470120 + 0 NA exon (ENSMUSG00000043088.16, exon 14 of 14) protein_coding-exon (ENSMUSG00000043088.16, exon 14 of 14) 3182 ENSMUSG00000043088.16 ENSMUSG00000043088 ENSMUST00000205211 Il17re protein_coding Interval_34258 chr11 121695268 121696043 + 0 NA Intergenic Intergenic -7108 ENSMUSG00000039208.15 ENSMUSG00000039208 ENSMUST00000125580 Metrnl protein_coding Interval_138507 chr6 88801482 88802688 + 0 NA promoter-TSS (ENSMUSG00000107966.1) TEC-promoter-TSS (ENSMUSG00000107966.1) -158 ENSMUSG00000107966.1 ENSMUSG00000107966 ENSMUST00000203158 Gm44001 TEC Interval_133333 chr6 3383967 3385000 + 0 NA intron (ENSMUSG00000047735.14, intron 1 of 1) protein_coding-intron (ENSMUSG00000047735.14, intron 1 of 1) 523 ENSMUSG00000047735.14 ENSMUSG00000047735 ENSMUST00000201638 Samd9l protein_coding Interval_40277 chr12 103064835 103065325 + 0 NA intron (ENSMUSG00000021198.16, intron 14 of 51) protein_coding-intron (ENSMUSG00000021198.16, intron 11 of 46) -36668 ENSMUSG00000113706.1 ENSMUSG00000113706 ENSMUST00000223546 Gm47201 processed_pseudogene Interval_89658 chr2 24152282 24153032 + 0 NA promoter-TSS (ENSMUSG00000026985.1) protein_coding-promoter-TSS (ENSMUSG00000026985.1) -504 ENSMUSG00000026985.1 ENSMUSG00000026985 ENSMUST00000028363 Il1f8 protein_coding Interval_105381 chr3 85787630 85787912 + 0 NA intron (ENSMUSG00000102805.5, intron 2 of 9) protein_coding-intron (ENSMUSG00000051000.17, intron 1 of 11) 99745 ENSMUSG00000031286.6 ENSMUSG00000031286 ENSMUST00000033643 Glt28d2 protein_coding Interval_32821 chr11 111090729 111091101 + 0 NA Intergenic Intergenic 24751 ENSMUSG00000041695.2 ENSMUSG00000041695 ENSMUST00000042970 Kcnj2 protein_coding Interval_102026 chr3 15255769 15256115 + 0 NA Intergenic Intergenic 76360 ENSMUSG00000078783.1 ENSMUSG00000078783 ENSMUST00000108361 Gm9733 protein_coding Interval_27048 chr11 62549780 62552016 + 0 NA promoter-TSS (ENSMUSG00000019505.7) protein_coding-promoter-TSS (ENSMUSG00000019505.7) 143 ENSMUSG00000087120.1 ENSMUSG00000087120 ENSMUST00000142533 Gm12279 antisense Interval_22623 chr11 12358775 12359835 + 0 NA intron (ENSMUSG00000020173.17, intron 5 of 11) protein_coding-intron (ENSMUSG00000020173.17, intron 6 of 14) 37030 ENSMUSG00000086584.8 ENSMUSG00000086584 ENSMUST00000174550 Gm12002 antisense Interval_12242 chr1 191070169 191070618 + 0 NA intron (ENSMUSG00000062510.12, intron 3 of 4) protein_coding-intron (ENSMUSG00000062510.12, intron 3 of 4) 7369 ENSMUSG00000062510.12 ENSMUSG00000062510 ENSMUST00000078259 Nsl1 protein_coding Interval_10575 chr1 171970743 171971551 + 0 NA Intergenic Intergenic -51791 ENSMUSG00000104413.1 ENSMUSG00000104413 ENSMUST00000191636 Gm37065 antisense Interval_115408 chr4 98722510 98722680 + 0 NA Intergenic Intergenic -10608 ENSMUSG00000087166.9 ENSMUSG00000087166 ENSMUST00000173659 L1td1 protein_coding Interval_92807 chr2 65668084 65669079 + 0 NA promoter-TSS (ENSMUSG00000075318.13) protein_coding-promoter-TSS (ENSMUSG00000075318.13) -15178 ENSMUSG00000075318.13 ENSMUSG00000075318 ENSMUST00000202162 Scn2a protein_coding Interval_42342 chr13 12232486 12233518 + 0 NA exon (ENSMUSG00000021311.9, exon 13 of 33) protein_coding-exon (ENSMUSG00000021311.9, exon 13 of 33) 25111 ENSMUSG00000021311.9 ENSMUSG00000021311 ENSMUST00000221290 Mtr protein_coding Interval_174191 chrX 139247229 139248305 + 0 NA intron (ENSMUSG00000086807.8, intron 19 of 19) processed_transcript-intron (ENSMUSG00000086807.8, intron 19 of 19) 9844 ENSMUSG00000081869.1 ENSMUSG00000081869 ENSMUST00000118406 Gm15002 processed_pseudogene Interval_152014 chr7 128270367 128271303 + 0 NA TTS (ENSMUSG00000030780.15) protein_coding-TTS (ENSMUSG00000030780.15) 5152 ENSMUSG00000030781.13 ENSMUSG00000030781 ENSMUST00000206703 Slc5a2 protein_coding Interval_68589 chr16 79968955 79969523 + 0 NA Intergenic Intergenic -30137 ENSMUSG00000101810.1 ENSMUSG00000101810 ENSMUST00000191029 1700066C05Rik lincRNA Interval_100031 chr2 166644911 166645353 + 0 NA exon (ENSMUSG00000039621.13, exon 2 of 2) protein_coding-exon (ENSMUSG00000039621.13, exon 2 of 2) 10010 ENSMUSG00000093063.1 ENSMUSG00000093063 ENSMUST00000175322 Gm23152 rRNA Interval_82285 chr18 70091838 70092048 + 0 NA intron (ENSMUSG00000024511.15, intron 2 of 6) protein_coding-intron (ENSMUSG00000024511.15, intron 2 of 6) 21720 ENSMUSG00000117678.1 ENSMUSG00000117678 ENSMUST00000237601 Gm50219 processed_pseudogene Interval_159027 chr8 88939013 88939737 + 0 NA Intergenic Intergenic -76301 ENSMUSG00000109778.1 ENSMUSG00000109778 ENSMUST00000211407 Gm45504 TEC Interval_165504 chr9 48810691 48811246 + 0 NA intron (ENSMUSG00000066687.5, intron 2 of 6) protein_coding-intron (ENSMUSG00000066687.5, intron 2 of 6) 25254 ENSMUSG00000066687.5 ENSMUSG00000066687 ENSMUST00000216150 Zbtb16 protein_coding Interval_17691 chr10 79563009 79563495 + 0 NA Intergenic Intergenic 16868 ENSMUSG00000020317.14 ENSMUSG00000020317 ENSMUST00000020566 Theg protein_coding Interval_107611 chr3 108878542 108879607 + 0 NA intron (ENSMUSG00000045326.13, intron 4 of 12) protein_coding-intron (ENSMUSG00000045326.13, intron 4 of 11) -2749 ENSMUSG00000105175.1 ENSMUSG00000105175 ENSMUST00000196867 Gm43097 processed_pseudogene Interval_11736 chr1 184998966 185000533 + 0 NA promoter-TSS (ENSMUSG00000026620.11) protein_coding-promoter-TSS (ENSMUSG00000026620.11) -274 ENSMUSG00000026620.11 ENSMUSG00000026620 ENSMUST00000192657 Mark1 protein_coding Interval_114013 chr4 62467733 62468509 + 0 NA intron (ENSMUSG00000028391.16, intron 2 of 3) protein_coding-intron (ENSMUSG00000028391.16, intron 2 of 10) 2775 ENSMUSG00000028391.16 ENSMUSG00000028391 ENSMUST00000135811 Wdr31 protein_coding Interval_33548 chr11 117145476 117145998 + 0 NA intron (ENSMUSG00000020823.16, intron 7 of 11) protein_coding-intron (ENSMUSG00000020823.16, intron 7 of 16) -9332 ENSMUSG00000020823.16 ENSMUSG00000020823 ENSMUST00000153437 Sec14l1 protein_coding Interval_75716 chr17 70836507 70836929 + 0 NA TTS (ENSMUSG00000093622.1) lincRNA-TTS (ENSMUSG00000093622.1) 2054 ENSMUSG00000093622.1 ENSMUSG00000093622 ENSMUST00000175668 Gm20703 lincRNA Interval_167410 chr9 68791888 68792965 + 0 NA intron (ENSMUSG00000032238.17, intron 1 of 5) protein_coding-intron (ENSMUSG00000032238.17, intron 1 of 10) 138535 ENSMUSG00000032238.17 ENSMUSG00000032238 ENSMUST00000113624 Rora protein_coding Interval_117232 chr4 120801458 120802265 + 0 NA intron (ENSMUSG00000032897.17, intron 1 of 9) protein_coding-intron (ENSMUSG00000032897.17, intron 1 of 9) -29164 ENSMUSG00000065409.1 ENSMUSG00000065409 ENSMUST00000083475 Mir30e miRNA Interval_65114 chr16 19791558 19792193 + 0 NA Intergenic Intergenic 31641 ENSMUSG00000022686.14 ENSMUSG00000022686 ENSMUST00000119468 B3gnt5 protein_coding Interval_87225 chr19 47026358 47026748 + 0 NA Intergenic Intergenic 11855 ENSMUSG00000034336.3 ENSMUSG00000034336 ENSMUST00000037636 Ina protein_coding Interval_90608 chr2 31442505 31443073 + 0 NA intron (ENSMUSG00000055632.18, intron 85 of 97) protein_coding-intron (ENSMUSG00000055632.18, intron 85 of 97) -57937 ENSMUSG00000076441.9 ENSMUSG00000076441 ENSMUST00000130195 Ass1 protein_coding Interval_89598 chr2 23129158 23129379 + 0 NA intron (ENSMUSG00000026779.6, intron 9 of 11) protein_coding-intron (ENSMUSG00000026779.6, intron 9 of 11) 26629 ENSMUSG00000026779.6 ENSMUSG00000026779 ENSMUST00000136207 Mastl protein_coding Interval_144127 chr7 19555519 19555824 + 0 NA intron (ENSMUSG00000051403.9, intron 1 of 12) protein_coding-intron (ENSMUSG00000051403.9, intron 1 of 12) 21924 ENSMUSG00000044709.6 ENSMUSG00000044709 ENSMUST00000151646 Gemin7 protein_coding Interval_102775 chr3 30937894 30938296 + 0 NA intron (ENSMUSG00000037652.15, intron 6 of 14) protein_coding-intron (ENSMUSG00000037652.15, intron 7 of 16) 19543 ENSMUSG00000102369.1 ENSMUSG00000102369 ENSMUST00000194340 9530022L04Rik TEC Interval_86957 chr19 45207912 45209440 + 0 NA Intergenic Intergenic 27136 ENSMUSG00000025216.9 ENSMUSG00000025216 ENSMUST00000099401 Lbx1 protein_coding Interval_16870 chr10 69370803 69371832 + 0 NA Intergenic Intergenic 1995 ENSMUSG00000112509.1 ENSMUSG00000112509 ENSMUST00000219632 Gm47211 processed_pseudogene Interval_12987 chr10 8899286 8899556 + 0 NA Intergenic Intergenic -4560 ENSMUSG00000111731.1 ENSMUSG00000111731 ENSMUST00000215873 Gm48727 lincRNA Interval_82046 chr18 67343458 67343951 + 0 NA promoter-TSS (ENSMUSG00000024526.9) protein_coding-promoter-TSS (ENSMUSG00000024526.9) 100 ENSMUSG00000024526.9 ENSMUSG00000024526 ENSMUST00000025404 Cidea protein_coding Interval_106519 chr3 96868469 96868710 + 0 NA TTS (ENSMUSG00000028096.13) protein_coding-TTS (ENSMUSG00000028096.13) 29958 ENSMUSG00000028096.13 ENSMUSG00000028096 ENSMUST00000154750 Gpr89 protein_coding Interval_169106 chr9 92541734 92543212 + 0 NA exon (ENSMUSG00000032374.14, exon 1 of 19) protein_coding-exon (ENSMUSG00000032374.14, exon 1 of 19) 396 ENSMUSG00000103622.1 ENSMUSG00000103622 ENSMUST00000191720 Gm38391 TEC Interval_93450 chr2 73147468 73147771 + 0 NA intron (ENSMUSG00000027108.15, intron 4 of 9) protein_coding-intron (ENSMUSG00000027108.15, intron 5 of 10) 15874 ENSMUSG00000083569.1 ENSMUSG00000083569 ENSMUST00000120032 Gm13666 processed_pseudogene Interval_37944 chr12 73216726 73217235 + 0 NA intron (ENSMUSG00000021103.12, intron 6 of 6) protein_coding-intron (ENSMUSG00000021103.12, intron 6 of 7) 69730 ENSMUSG00000034442.11 ENSMUSG00000034442 ENSMUST00000221189 Trmt5 protein_coding Interval_139030 chr6 94303596 94303967 + 0 NA Intergenic Intergenic 20253 ENSMUSG00000107545.1 ENSMUSG00000107545 ENSMUST00000204466 Gm44307 processed_pseudogene Interval_30643 chr11 95641207 95641511 + 0 NA Intergenic Intergenic 18699 ENSMUSG00000084856.1 ENSMUSG00000084856 ENSMUST00000156822 Gm11528 lincRNA Interval_68820 chr16 87356172 87356412 + 0 NA intron (ENSMUSG00000044442.11, intron 2 of 3) protein_coding-intron (ENSMUSG00000044442.11, intron 2 of 5) 2049 ENSMUSG00000044442.11 ENSMUSG00000044442 ENSMUST00000118115 N6amt1 protein_coding Interval_36290 chr12 40797655 40798419 + 0 NA TTS (ENSMUSG00000035954.10) protein_coding-TTS (ENSMUSG00000035954.10) -77500 ENSMUSG00000113435.1 ENSMUSG00000113435 ENSMUST00000221545 Gm19441 processed_pseudogene Interval_2087 chr1 36317899 36318233 + 0 NA TTS (ENSMUSG00000037447.16) protein_coding-TTS (ENSMUSG00000037447.16) 10308 ENSMUSG00000037447.16 ENSMUSG00000037447 ENSMUST00000141121 Arid5a protein_coding Interval_4172 chr1 71155030 71155413 + 0 NA TTS (ENSMUSG00000101551.1) processed_pseudogene-TTS (ENSMUSG00000101551.1) 799 ENSMUSG00000101551.1 ENSMUSG00000101551 ENSMUST00000188170 Gm8870 processed_pseudogene Interval_107092 chr3 103477553 103477944 + 0 NA Intergenic Intergenic -31948 ENSMUSG00000065029.1 ENSMUSG00000065029 ENSMUST00000083095 Gm25199 snRNA Interval_43780 chr13 36361137 36361503 + 0 NA intron (ENSMUSG00000021420.13, intron 1 of 2) protein_coding-intron (ENSMUSG00000021420.13, intron 5 of 6) 34362 ENSMUSG00000021420.13 ENSMUSG00000021420 ENSMUST00000225048 Fars2 protein_coding Interval_67307 chr16 45808119 45808627 + 0 NA exon (ENSMUSG00000033149.17, exon 3 of 18) protein_coding-exon (ENSMUSG00000033149.17, exon 3 of 18) -36090 ENSMUSG00000033149.17 ENSMUSG00000033149 ENSMUST00000136317 Phldb2 protein_coding Interval_52906 chr14 51988835 51989777 + 0 NA promoter-TSS (ENSMUSG00000097633.2) antisense-promoter-TSS (ENSMUSG00000097633.2) -479 ENSMUSG00000097633.2 ENSMUSG00000097633 ENSMUST00000181008 Gm16617 antisense Interval_85420 chr19 25643186 25643618 + 0 NA Intergenic Intergenic 28820 ENSMUSG00000101089.1 ENSMUSG00000101089 ENSMUST00000186768 2610016A17Rik antisense Interval_103108 chr3 35418239 35419342 + 0 NA Intergenic Intergenic 4957 ENSMUSG00000106512.1 ENSMUSG00000106512 ENSMUST00000197222 Gm43078 TEC Interval_132274 chr5 143874602 143875129 + 0 NA TTS (ENSMUSG00000029613.15) protein_coding-TTS (ENSMUSG00000029613.15) 22820 ENSMUSG00000029607.14 ENSMUSG00000029607 ENSMUST00000110718 Ankrd61 protein_coding Interval_4351 chr1 72878007 72878254 + 0 NA Intergenic Intergenic -3855 ENSMUSG00000026185.8 ENSMUSG00000026185 ENSMUST00000137339 Igfbp5 protein_coding Interval_45326 chr13 54446725 54448444 + 0 NA Intergenic Intergenic -17884 ENSMUSG00000089341.1 ENSMUSG00000089341 ENSMUST00000158716 Gm22668 misc_RNA Interval_156222 chr8 46210455 46211742 + 0 NA promoter-TSS (ENSMUSG00000031633.4) protein_coding-promoter-TSS (ENSMUSG00000031633.4) -68 ENSMUSG00000031633.4 ENSMUSG00000031633 ENSMUST00000155986 Slc25a4 protein_coding Interval_104234 chr3 61392759 61393009 + 0 NA Intergenic Intergenic -26933 ENSMUSG00000053706.2 ENSMUSG00000053706 ENSMUST00000066298 B430305J03Rik protein_coding Interval_117367 chr4 123282175 123284144 + 0 NA promoter-TSS (ENSMUSG00000011257.19) protein_coding-promoter-TSS (ENSMUSG00000011257.19) 314 ENSMUSG00000011257.19 ENSMUSG00000011257 ENSMUST00000146156 Pabpc4 protein_coding Interval_131972 chr5 141579492 141580882 + 0 NA intron (ENSMUSG00000039683.16, intron 1 of 9) protein_coding-intron (ENSMUSG00000039683.16, intron 1 of 44) -13938 ENSMUSG00000089164.1 ENSMUSG00000089164 ENSMUST00000158539 Gm24131 snRNA Interval_160725 chr8 111835452 111835993 + 0 NA intron (ENSMUSG00000031954.6, intron 4 of 6) protein_coding-intron (ENSMUSG00000031954.6, intron 4 of 6) 18569 ENSMUSG00000031954.6 ENSMUSG00000031954 ENSMUST00000034432 Cfdp1 protein_coding Interval_42123 chr13 8982296 8983010 + 0 NA intron (ENSMUSG00000021149.8, intron 10 of 16) protein_coding-intron (ENSMUSG00000021149.8, intron 9 of 15) -5309 ENSMUSG00000021149.8 ENSMUSG00000021149 ENSMUST00000220546 Gtpbp4 protein_coding Interval_27675 chr11 69413353 69413548 + 0 NA intron (ENSMUSG00000018476.7, intron 1 of 22) protein_coding-intron (ENSMUSG00000018476.7, intron 1 of 22) -9235 ENSMUSG00000018476.7 ENSMUSG00000018476 ENSMUST00000156562 Kdm6b protein_coding Interval_169487 chr9 98296459 98297714 + 0 NA intron (ENSMUSG00000032456.13, intron 1 of 3) protein_coding-intron (ENSMUSG00000032456.13, intron 1 of 4) 482 ENSMUSG00000032456.13 ENSMUSG00000032456 ENSMUST00000112937 Nmnat3 protein_coding Interval_114766 chr4 84883819 84885100 + 0 NA promoter-TSS (ENSMUSG00000038070.15) protein_coding-promoter-TSS (ENSMUSG00000038070.15) -6 ENSMUSG00000038070.15 ENSMUSG00000038070 ENSMUST00000107190 Cntln protein_coding Interval_25982 chr11 53316734 53318669 + 0 NA Intergenic Intergenic -9699 ENSMUSG00000018239.9 ENSMUSG00000018239 ENSMUST00000141585 Zcchc10 protein_coding Interval_47781 chr13 92702913 92704057 + 0 NA intron (ENSMUSG00000021703.9, intron 9 of 11) protein_coding-intron (ENSMUSG00000021703.9, intron 9 of 11) -2297 ENSMUSG00000021703.9 ENSMUSG00000021703 ENSMUST00000224458 Serinc5 protein_coding Interval_172509 chrX 22322702 22323221 + 0 NA Intergenic Intergenic -16687 ENSMUSG00000081064.1 ENSMUSG00000081064 ENSMUST00000119561 Gm6071 processed_pseudogene Interval_33280 chr11 115680875 115681092 + 0 NA intron (ENSMUSG00000059923.13, intron 2 of 3) protein_coding-intron (ENSMUSG00000059923.13, intron 2 of 5) 18945 ENSMUSG00000059923.13 ENSMUSG00000059923 ENSMUST00000135065 Grb2 protein_coding Interval_66842 chr16 38032631 38033420 + 0 NA Intergenic Intergenic 52938 ENSMUSG00000065188.1 ENSMUSG00000065188 ENSMUST00000083254 Gm25140 snRNA Interval_14343 chr10 31172842 31173651 + 0 NA Intergenic Intergenic -9614 ENSMUSG00000095305.1 ENSMUSG00000095305 ENSMUST00000083013 Gm23790 snRNA Interval_158779 chr8 86381407 86381656 + 0 NA Intergenic Intergenic 89030 ENSMUSG00000065737.1 ENSMUSG00000065737 ENSMUST00000083803 Gm24490 snRNA Interval_90499 chr2 30820081 30820357 + 0 NA intron (ENSMUSG00000026857.9, intron 3 of 4) protein_coding-intron (ENSMUSG00000026857.9, intron 2 of 3) 8035 ENSMUSG00000039483.10 ENSMUSG00000039483 ENSMUST00000147414 Asb6 protein_coding Interval_98224 chr2 150136126 150137123 + 0 NA promoter-TSS (ENSMUSG00000068134.13) protein_coding-promoter-TSS (ENSMUSG00000068134.13) 32 ENSMUSG00000068134.13 ENSMUSG00000068134 ENSMUST00000142792 Zfp120 protein_coding Interval_103216 chr3 36943598 36944222 + 0 NA TTS (ENSMUSG00000037270.18) protein_coding-TTS (ENSMUSG00000037270.18) 73882 ENSMUSG00000037270.18 ENSMUSG00000037270 ENSMUST00000196036 4932438A13Rik protein_coding Interval_151655 chr7 125722028 125722917 + 0 NA intron (ENSMUSG00000032743.15, intron 1 of 3) protein_coding-intron (ENSMUSG00000032743.15, intron 1 of 27) 14555 ENSMUSG00000032743.15 ENSMUSG00000032743 ENSMUST00000155059 D430042O09Rik protein_coding Interval_96465 chr2 124089800 124091237 + 0 NA intron (ENSMUSG00000027200.17, intron 1 of 1) protein_coding-intron (ENSMUSG00000027200.17, intron 1 of 20) 39438 ENSMUSG00000085496.1 ENSMUSG00000085496 ENSMUST00000129584 4930517E11Rik lincRNA Interval_146582 chr7 47022765 47024400 + 0 NA Intergenic Intergenic -15347 ENSMUSG00000049516.9 ENSMUSG00000049516 ENSMUST00000208588 Spty2d1 protein_coding Interval_126321 chr5 86593681 86594763 + 0 NA intron (ENSMUSG00000048764.16, intron 1 of 1) protein_coding-intron (ENSMUSG00000048764.16, intron 1 of 10) 38161 ENSMUSG00000048764.16 ENSMUSG00000048764 ENSMUST00000173259 Tmprss11f protein_coding Interval_47395 chr13 83200173 83200531 + 0 NA Intergenic Intergenic -10643 ENSMUSG00000114735.1 ENSMUSG00000114735 ENSMUST00000224835 Gm48156 processed_pseudogene Interval_118856 chr4 134081621 134082534 + 0 NA promoter-TSS (ENSMUSG00000012123.17) protein_coding-promoter-TSS (ENSMUSG00000012123.17) 12964 ENSMUSG00000000682.7 ENSMUSG00000000682 ENSMUST00000137445 Cd52 protein_coding Interval_114952 chr4 87557402 87558210 + 0 NA Intergenic Intergenic -22983 ENSMUSG00000082443.1 ENSMUSG00000082443 ENSMUST00000118382 Gm12604 processed_pseudogene Interval_60934 chr15 77981902 77982753 + 0 NA Intergenic Intergenic -18555 ENSMUSG00000016554.9 ENSMUSG00000016554 ENSMUST00000229713 Eif3d protein_coding Interval_12661 chr10 4210241 4211884 + 0 NA intron (ENSMUSG00000111266.1, intron 2 of 3) lincRNA-intron (ENSMUSG00000111266.1, intron 2 of 3) 2052 ENSMUSG00000111266.1 ENSMUSG00000111266 ENSMUST00000213553 Gm30570 lincRNA Interval_78281 chr18 11534182 11535495 + 0 NA Intergenic Intergenic -90077 ENSMUSG00000117535.1 ENSMUSG00000117535 ENSMUST00000234170 Gm50067 processed_pseudogene Interval_111292 chr4 17408662 17409589 + 0 NA Intergenic Intergenic 150894 ENSMUSG00000089218.1 ENSMUSG00000089218 ENSMUST00000158593 Gm23384 snRNA Interval_77521 chr17 90722306 90723115 + 0 NA intron (ENSMUSG00000024109.18, intron 1 of 12) protein_coding-intron (ENSMUSG00000024109.18, intron 4 of 20) 71296 ENSMUSG00000092549.1 ENSMUSG00000092549 ENSMUST00000173765 Gm20491 processed_pseudogene Interval_173954 chrX 115256086 115256695 + 0 NA Intergenic Intergenic 27053 ENSMUSG00000083452.1 ENSMUSG00000083452 ENSMUST00000122351 Gm14905 processed_pseudogene Interval_61484 chr15 81904874 81905375 + 0 NA intron (ENSMUSG00000022477.13, intron 5 of 5) protein_coding-intron (ENSMUSG00000022477.13, intron 7 of 17) 20272 ENSMUSG00000022476.8 ENSMUSG00000022476 ENSMUST00000229402 Polr3h protein_coding Interval_66795 chr16 37682468 37684048 + 0 NA Intergenic Intergenic 14082 ENSMUSG00000116529.1 ENSMUSG00000116529 ENSMUST00000231714 Gm4600 processed_pseudogene Interval_137684 chr6 79283748 79285172 + 0 NA Intergenic Intergenic 236344 ENSMUSG00000107772.1 ENSMUSG00000107772 ENSMUST00000203518 Gm5311 processed_pseudogene Interval_64333 chr16 10565317 10565756 + 0 NA intron (ENSMUSG00000068663.14, intron 3 of 22) protein_coding-intron (ENSMUSG00000068663.14, intron 3 of 20) 20172 ENSMUSG00000068663.14 ENSMUSG00000068663 ENSMUST00000145866 Clec16a protein_coding Interval_158859 chr8 87449893 87450409 + 0 NA Intergenic Intergenic -8293 ENSMUSG00000098360.1 ENSMUSG00000098360 ENSMUST00000184406 4930535O05Rik lincRNA Interval_93173 chr2 70824846 70826035 + 0 NA promoter-TSS (ENSMUSG00000041997.16) protein_coding-promoter-TSS (ENSMUSG00000041997.16) -31249 ENSMUSG00000082303.1 ENSMUSG00000082303 ENSMUST00000120668 Gm13633 processed_pseudogene Interval_17993 chr10 81272760 81273006 + 0 NA TTS (ENSMUSG00000034917.8) protein_coding-TTS (ENSMUSG00000034917.8) 1286 ENSMUSG00000092781.1 ENSMUSG00000092781 ENSMUST00000175040 Mir3057 miRNA Interval_129820 chr5 122526065 122527818 + 0 NA Intergenic Intergenic 20152 ENSMUSG00000088583.1 ENSMUSG00000088583 ENSMUST00000157958 Gm22965 snRNA Interval_132697 chr5 147227129 147228081 + 0 NA TTS (ENSMUSG00000092570.7) antisense-TTS (ENSMUSG00000092570.7) -27352 ENSMUSG00000077735.1 ENSMUSG00000077735 ENSMUST00000104547 Gm24556 snoRNA Interval_108165 chr3 122096524 122097350 + 0 NA exon (ENSMUSG00000028125.14, exon 13 of 13) protein_coding-exon (ENSMUSG00000028125.14, exon 13 of 13) 55682 ENSMUSG00000105351.1 ENSMUSG00000105351 ENSMUST00000198223 Gm43157 processed_pseudogene Interval_802 chr1 11466135 11467417 + 0 NA intron (ENSMUSG00000057715.13, intron 1 of 1) protein_coding-intron (ENSMUSG00000057715.13, intron 1 of 13) 49858 ENSMUSG00000103825.1 ENSMUSG00000103825 ENSMUST00000194502 Gm38178 TEC Interval_116839 chr4 117612427 117613308 + 0 NA intron (ENSMUSG00000033423.16, intron 5 of 7) protein_coding-intron (ENSMUSG00000033423.16, intron 6 of 8) 42733 ENSMUSG00000087807.1 ENSMUSG00000087807 ENSMUST00000157182 Gm25559 miRNA Interval_71841 chr17 26451392 26452898 + 0 NA intron (ENSMUSG00000118232.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000118232.1, intron 1 of 1) 12012 ENSMUSG00000118232.1 ENSMUSG00000118232 ENSMUST00000236943 Gm50269 lincRNA Interval_53230 chr14 55385813 55386877 + 0 NA intron (ENSMUSG00000115322.1, intron 4 of 7) unprocessed_pseudogene-intron (ENSMUSG00000115322.1, intron 4 of 7) 2748 ENSMUSG00000115322.1 ENSMUSG00000115322 ENSMUST00000226206 Gm49023 unprocessed_pseudogene Interval_27173 chr11 63711942 63712285 + 0 NA Intergenic Intergenic 106187 ENSMUSG00000083142.1 ENSMUSG00000083142 ENSMUST00000121054 Gm12288 processed_pseudogene Interval_136038 chr6 50220989 50221268 + 0 NA intron (ENSMUSG00000029821.15, intron 6 of 9) protein_coding-intron (ENSMUSG00000029821.15, intron 7 of 10) 40847 ENSMUSG00000029821.15 ENSMUSG00000029821 ENSMUST00000204700 Gsdme protein_coding Interval_87825 chr19 56302567 56303398 + 0 NA intron (ENSMUSG00000025075.14, intron 2 of 11) protein_coding-intron (ENSMUSG00000025075.14, intron 3 of 13) 14986 ENSMUSG00000025075.14 ENSMUSG00000025075 ENSMUST00000165522 Habp2 protein_coding Interval_132087 chr5 142712278 142712698 + 0 NA intron (ENSMUSG00000050822.11, intron 3 of 3) protein_coding-intron (ENSMUSG00000050822.11, intron 3 of 10) 19976 ENSMUSG00000050822.11 ENSMUSG00000050822 ENSMUST00000058418 Slc29a4 protein_coding Interval_143613 chr7 13171622 13171986 + 0 NA intron (ENSMUSG00000117853.1, intron 2 of 2) protein_coding-intron (ENSMUSG00000117853.1, intron 2 of 2) -7099 ENSMUSG00000048261.6 ENSMUSG00000048261 ENSMUST00000122190 Gm4879 processed_pseudogene Interval_172419 chrX 18625396 18625941 + 0 NA Intergenic Intergenic -164271 ENSMUSG00000037358.6 ENSMUSG00000037358 ENSMUST00000044188 Dipk2b protein_coding Interval_55029 chr14 77195399 77195904 + 0 NA intron (ENSMUSG00000022012.9, intron 1 of 2) protein_coding-intron (ENSMUSG00000022012.9, intron 1 of 18) 56663 ENSMUSG00000063556.5 ENSMUSG00000063556 ENSMUST00000099431 Gm10132 processed_pseudogene Interval_125639 chr5 72969698 72970287 + 0 NA intron (ENSMUSG00000063656.6, intron 1 of 1) protein_coding-intron (ENSMUSG00000063656.6, intron 1 of 1) 1272 ENSMUSG00000088268.1 ENSMUSG00000088268 ENSMUST00000157643 Gm24776 snRNA Interval_120202 chr4 144240104 144240345 + 0 NA Intergenic Intergenic -7553 ENSMUSG00000083708.1 ENSMUSG00000083708 ENSMUST00000122173 Gm13123 processed_pseudogene Interval_8158 chr1 136149391 136149965 + 0 NA exon (ENSMUSG00000041642.18, exon 6 of 6) protein_coding-exon (ENSMUSG00000041642.18, exon 6 of 6) -10680 ENSMUSG00000041642.18 ENSMUSG00000041642 ENSMUST00000165333 Kif21b protein_coding Interval_56561 chr14 120350123 120350860 + 0 NA intron (ENSMUSG00000022139.17, intron 2 of 2) protein_coding-intron (ENSMUSG00000022139.17, intron 2 of 8) -28750 ENSMUSG00000022139.17 ENSMUSG00000022139 ENSMUST00000227153 Mbnl2 protein_coding Interval_162740 chr9 8205522 8205816 + 0 NA Intergenic Intergenic -16301 ENSMUSG00000031998.5 ENSMUSG00000031998 ENSMUST00000213708 1700128F08Rik transcribed_processed_pseudogene Interval_19303 chr10 96370649 96371688 + 0 NA Intergenic Intergenic -25344 ENSMUSG00000112749.1 ENSMUSG00000112749 ENSMUST00000218388 Gm48428 lincRNA Interval_8986 chr1 152909704 152909966 + 0 NA Intergenic Intergenic -26769 ENSMUSG00000103840.1 ENSMUSG00000103840 ENSMUST00000195145 1700040K01Rik TEC Interval_127268 chr5 102006054 102007534 + 0 NA intron (ENSMUSG00000043940.15, intron 3 of 15) protein_coding-intron (ENSMUSG00000043940.15, intron 3 of 66) -25236 ENSMUSG00000043940.15 ENSMUSG00000043940 ENSMUST00000172512 Wdfy3 protein_coding Interval_80929 chr18 50364598 50365099 + 0 NA Intergenic Intergenic 86479 ENSMUSG00000035420.7 ENSMUSG00000035420 ENSMUST00000238078 Fam170a protein_coding Interval_155469 chr8 33786215 33787284 + 0 NA intron (ENSMUSG00000031586.17, intron 2 of 2) protein_coding-intron (ENSMUSG00000031586.17, intron 7 of 7) -26454 ENSMUSG00000097442.1 ENSMUSG00000097442 ENSMUST00000181120 Gm26632 antisense Interval_61457 chr15 81751109 81751347 + 0 NA intron (ENSMUSG00000022390.11, intron 1 of 5) protein_coding-intron (ENSMUSG00000022390.11, intron 1 of 22) -5698 ENSMUSG00000022391.16 ENSMUSG00000022391 ENSMUST00000230726 Rangap1 protein_coding Interval_38727 chr12 81640757 81641140 + 0 NA intron (ENSMUSG00000042734.6, intron 1 of 3) protein_coding-intron (ENSMUSG00000042734.6, intron 1 of 2) 9699 ENSMUSG00000042734.6 ENSMUSG00000042734 ENSMUST00000036116 Ttc9 protein_coding Interval_38879 chr12 83568647 83570362 + 0 NA intron (ENSMUSG00000042628.8, intron 4 of 12) protein_coding-intron (ENSMUSG00000042628.8, intron 3 of 11) 27318 ENSMUSG00000042628.8 ENSMUSG00000042628 ENSMUST00000223380 Zfyve1 protein_coding Interval_128453 chr5 113393419 113394724 + 0 NA Intergenic Intergenic 36777 ENSMUSG00000053873.1 ENSMUSG00000053873 ENSMUST00000066573 Aym1 protein_coding Interval_160447 chr8 109559420 109559923 + 0 NA exon (ENSMUSG00000037993.8, exon 8 of 27) protein_coding-exon (ENSMUSG00000037993.8, exon 8 of 27) -7547 ENSMUSG00000037993.8 ENSMUSG00000037993 ENSMUST00000212667 Dhx38 protein_coding Interval_74918 chr17 57285085 57286931 + 0 NA intron (ENSMUSG00000034116.17, intron 2 of 27) protein_coding-intron (ENSMUSG00000034116.17, intron 1 of 26) -17056 ENSMUSG00000034116.17 ENSMUSG00000034116 ENSMUST00000008847 Vav1 protein_coding Interval_93170 chr2 70808664 70809091 + 0 NA intron (ENSMUSG00000041997.16, intron 1 of 21) protein_coding-intron (ENSMUSG00000041997.16, intron 1 of 19) -47812 ENSMUSG00000082303.1 ENSMUSG00000082303 ENSMUST00000120668 Gm13633 processed_pseudogene Interval_96025 chr2 119255004 119255446 + 0 NA Intergenic Intergenic 8852 ENSMUSG00000027315.13 ENSMUSG00000027315 ENSMUST00000134872 Spint1 protein_coding Interval_32235 chr11 106364606 106367192 + 0 NA intron (ENSMUSG00000009210.10, intron 1 of 6) protein_coding-intron (ENSMUSG00000009210.10, intron 1 of 6) -8946 ENSMUSG00000009210.10 ENSMUSG00000009210 ENSMUST00000190268 Prr29 protein_coding Interval_104141 chr3 59005057 59007530 + 0 NA promoter-TSS (ENSMUSG00000056476.13) protein_coding-promoter-TSS (ENSMUSG00000056476.13) -135 ENSMUSG00000105945.1 ENSMUSG00000105945 ENSMUST00000199951 Gm43570 antisense Interval_100276 chr2 168117078 168117917 + 0 NA exon (ENSMUSG00000118526.2, exon 2 of 8) unitary_pseudogene-exon (ENSMUSG00000118526.2, exon 2 of 8) 2620 ENSMUSG00000118526.2 ENSMUSG00000118526 ENSMUST00000239040 AL831766.1 unitary_pseudogene Interval_44054 chr13 40587103 40588189 + 0 NA intron (ENSMUSG00000114198.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000114198.1, intron 1 of 1) 18833 ENSMUSG00000114198.1 ENSMUSG00000114198 ENSMUST00000223618 Gm47039 lincRNA Interval_48369 chr13 98561160 98562811 + 0 NA Intergenic Intergenic 1631 ENSMUSG00000093116.1 ENSMUSG00000093116 ENSMUST00000175375 Gm22698 miRNA Interval_102065 chr3 16382728 16383027 + 0 NA Intergenic Intergenic 199641 ENSMUSG00000047213.14 ENSMUSG00000047213 ENSMUST00000108346 Ythdf3 protein_coding Interval_81988 chr18 66947488 66948229 + 0 NA intron (ENSMUSG00000118216.1, intron 1 of 4) lincRNA-intron (ENSMUSG00000118216.1, intron 1 of 2) 2165 ENSMUSG00000118216.1 ENSMUSG00000118216 ENSMUST00000235553 Gm19784 lincRNA Interval_151233 chr7 119941389 119941894 + 0 NA intron (ENSMUSG00000052273.4, intron 53 of 60) protein_coding-intron (ENSMUSG00000052273.4, intron 53 of 60) -28180 ENSMUSG00000088172.1 ENSMUSG00000088172 ENSMUST00000157547 Gm25217 snRNA Interval_29176 chr11 81072356 81072879 + 0 NA exon (ENSMUSG00000085130.1, exon 1 of 3) antisense-exon (ENSMUSG00000085130.1, exon 1 of 3) 214 ENSMUSG00000085130.1 ENSMUSG00000085130 ENSMUST00000150536 Gm11417 antisense Interval_157314 chr8 69218967 69219374 + 0 NA intron (ENSMUSG00000059897.5, intron 1 of 3) protein_coding-intron (ENSMUSG00000059897.5, intron 1 of 2) 6622 ENSMUSG00000110538.1 ENSMUSG00000110538 ENSMUST00000212090 Gm33178 processed_pseudogene Interval_106663 chr3 98267298 98267525 + 0 NA Intergenic Intergenic -13024 ENSMUSG00000027875.12 ENSMUSG00000027875 ENSMUST00000090746 Hmgcs2 protein_coding Interval_123217 chr5 30704404 30704709 + 0 NA Intergenic Intergenic 37558 ENSMUSG00000029177.9 ENSMUSG00000029177 ENSMUST00000134372 Cenpa protein_coding Interval_75948 chr17 73518345 73519054 + 0 NA promoter-TSS (ENSMUSG00000117102.1) TEC-promoter-TSS (ENSMUSG00000117102.1) -944 ENSMUSG00000117102.1 ENSMUSG00000117102 ENSMUST00000233431 AC107792.1 TEC Interval_15682 chr10 53502755 53504025 + 0 NA exon (ENSMUSG00000112739.1, exon 4 of 4) lincRNA-exon (ENSMUSG00000112739.1, exon 4 of 4) 15168 ENSMUSG00000112733.1 ENSMUSG00000112733 ENSMUST00000218707 Gm40650 lincRNA Interval_157279 chr8 68929537 68930552 + 0 NA Intergenic Intergenic -20277 ENSMUSG00000110449.1 ENSMUSG00000110449 ENSMUST00000212089 Gm45780 processed_pseudogene Interval_136898 chr6 63568425 63569548 + 0 NA intron (ENSMUSG00000071424.10, intron 2 of 8) protein_coding-intron (ENSMUSG00000071424.10, intron 2 of 15) 215081 ENSMUSG00000108068.1 ENSMUSG00000108068 ENSMUST00000204208 Gm44075 processed_pseudogene Interval_157990 chr8 77594830 77595407 + 0 NA TTS (ENSMUSG00000031617.16) protein_coding-TTS (ENSMUSG00000031617.16) 15580 ENSMUSG00000031617.16 ENSMUSG00000031617 ENSMUST00000141202 Tmem184c protein_coding Interval_19070 chr10 94198515 94199778 + 0 NA intron (ENSMUSG00000020022.17, intron 1 of 3) protein_coding-intron (ENSMUSG00000020022.17, intron 1 of 3) 142 ENSMUSG00000020022.17 ENSMUSG00000020022 ENSMUST00000125379 Ndufa12 protein_coding Interval_115746 chr4 103263698 103263914 + 0 NA intron (ENSMUSG00000028520.12, intron 3 of 7) protein_coding-intron (ENSMUSG00000028520.12, intron 4 of 8) 27057 ENSMUSG00000028520.12 ENSMUSG00000028520 ENSMUST00000097944 4921539E11Rik protein_coding Interval_27481 chr11 68130012 68130674 + 0 NA intron (ENSMUSG00000020903.13, intron 6 of 6) protein_coding-intron (ENSMUSG00000020903.13, intron 7 of 7) -34379 ENSMUSG00000083924.1 ENSMUSG00000083924 ENSMUST00000120312 Gm12304 processed_pseudogene Interval_7124 chr1 126705817 126706749 + 0 NA intron (ENSMUSG00000049690.15, intron 1 of 2) protein_coding-intron (ENSMUSG00000049690.15, intron 1 of 12) 170332 ENSMUSG00000101600.1 ENSMUSG00000101600 ENSMUST00000188266 4930599A14Rik lincRNA Interval_136062 chr6 50394786 50395030 + 0 NA intron (ENSMUSG00000029822.15, intron 1 of 5) protein_coding-intron (ENSMUSG00000029822.15, intron 2 of 21) -42951 ENSMUSG00000029822.15 ENSMUSG00000029822 ENSMUST00000154333 Osbpl3 protein_coding Interval_57892 chr15 25036447 25036816 + 0 NA Intergenic Intergenic -18237 ENSMUSG00000097452.2 ENSMUSG00000097452 ENSMUST00000226189 Gm2824 lincRNA Interval_39686 chr12 92280602 92280811 + 0 NA Intergenic Intergenic 61329 ENSMUSG00000114085.1 ENSMUSG00000114085 ENSMUST00000220602 Gm6841 processed_pseudogene Interval_8127 chr1 135856772 135857797 + 0 NA Intergenic Intergenic -12498 ENSMUSG00000101482.1 ENSMUSG00000101482 ENSMUST00000189256 Gm28883 processed_pseudogene Interval_72226 chr17 28690771 28692274 + 0 NA promoter-TSS (ENSMUSG00000053436.15) protein_coding-promoter-TSS (ENSMUSG00000053436.15) 77 ENSMUSG00000053436.15 ENSMUSG00000053436 ENSMUST00000151613 Mapk14 protein_coding Interval_62797 chr15 97058952 97060057 + 0 NA Intergenic Intergenic -39553 ENSMUSG00000022464.14 ENSMUSG00000022464 ENSMUST00000230907 Slc38a4 protein_coding Interval_90873 chr2 33118335 33119177 + 0 NA intron (ENSMUSG00000038860.15, intron 1 of 4) protein_coding-intron (ENSMUSG00000038860.15, intron 1 of 4) 39414 ENSMUSG00000038831.16 ENSMUSG00000038831 ENSMUST00000113164 Ralgps1 protein_coding Interval_17380 chr10 76221820 76223006 + 0 NA intron (ENSMUSG00000020230.15, intron 5 of 5) protein_coding-intron (ENSMUSG00000020230.15, intron 5 of 10) -4658 ENSMUSG00000020230.15 ENSMUSG00000020230 ENSMUST00000217726 Prmt2 protein_coding Interval_126172 chr5 81329638 81330274 + 0 NA exon (ENSMUSG00000037605.16, exon 2 of 25) protein_coding-exon (ENSMUSG00000037605.16, exon 2 of 25) 80707 ENSMUSG00000107226.1 ENSMUSG00000107226 ENSMUST00000201153 Gm43594 TEC Interval_50427 chr14 12945025 12945240 + 0 NA Intergenic Intergenic -47563 ENSMUSG00000114561.1 ENSMUSG00000114561 ENSMUST00000223657 Gm48515 processed_pseudogene Interval_28659 chr11 77615283 77616381 + 0 NA Intergenic Intergenic -8017 ENSMUSG00000017291.13 ENSMUSG00000017291 ENSMUST00000058496 Taok1 protein_coding Interval_52386 chr14 45515594 45517091 + 0 NA intron (ENSMUSG00000037712.16, intron 2 of 5) protein_coding-intron (ENSMUSG00000037712.16, intron 2 of 14) -14016 ENSMUSG00000115324.1 ENSMUSG00000115324 ENSMUST00000227827 4930527F14Rik bidirectional_promoter_lncRNA Interval_125791 chr5 74173302 74173698 + 0 NA exon (ENSMUSG00000106735.1, exon 1 of 1) TEC-exon (ENSMUSG00000106735.1, exon 1 of 1) 2550 ENSMUSG00000106735.1 ENSMUSG00000106735 ENSMUST00000200757 A330058E17Rik TEC Interval_167520 chr9 70209531 70210228 + 0 NA intron (ENSMUSG00000032220.10, intron 1 of 17) protein_coding-intron (ENSMUSG00000032220.10, intron 1 of 27) 2529 ENSMUSG00000032220.10 ENSMUSG00000032220 ENSMUST00000034745 Myo1e protein_coding Interval_4738 chr1 78166442 78168749 + 0 NA intron (ENSMUSG00000004872.15, intron 4 of 7) protein_coding-intron (ENSMUSG00000004872.15, intron 4 of 8) 29518 ENSMUSG00000004872.15 ENSMUSG00000004872 ENSMUST00000172555 Pax3 protein_coding Interval_67602 chr16 52126113 52126346 + 0 NA intron (ENSMUSG00000022637.11, intron 4 of 18) protein_coding-intron (ENSMUSG00000022637.11, intron 4 of 17) -21082 ENSMUSG00000095977.1 ENSMUSG00000095977 ENSMUST00000158181 Gm23513 snoRNA Interval_14166 chr10 28245085 28245720 + 0 NA intron (ENSMUSG00000019889.10, intron 2 of 2) protein_coding-intron (ENSMUSG00000019889.10, intron 2 of 31) -31281 ENSMUSG00000076377.1 ENSMUSG00000076377 ENSMUST00000102422 Gm22370 miRNA Interval_87301 chr19 47479010 47479634 + 0 NA Intergenic Intergenic -33660 ENSMUSG00000097990.1 ENSMUSG00000097990 ENSMUST00000182109 Gm19557 antisense Interval_21798 chr11 4422262 4423817 + 0 NA intron (ENSMUSG00000020419.11, intron 5 of 10) protein_coding-intron (ENSMUSG00000020419.11, intron 6 of 11) 4223 ENSMUSG00000020419.11 ENSMUSG00000020419 ENSMUST00000124249 Hormad2 protein_coding Interval_64430 chr16 11307102 11307304 + 0 NA Intergenic Intergenic -6609 ENSMUSG00000022496.5 ENSMUSG00000022496 ENSMUST00000023140 Tnfrsf17 protein_coding Interval_116545 chr4 115280745 115281807 + 0 NA Intergenic Intergenic -17770 ENSMUSG00000066071.6 ENSMUSG00000066071 ENSMUST00000084343 Cyp4a12a protein_coding Interval_92903 chr2 68343971 68344483 + 0 NA intron (ENSMUSG00000027030.15, intron 3 of 10) protein_coding-intron (ENSMUSG00000027030.15, intron 10 of 17) 42454 ENSMUSG00000027030.15 ENSMUSG00000027030 ENSMUST00000149581 Stk39 protein_coding Interval_63874 chr16 4167053 4167781 + 0 NA intron (ENSMUSG00000022521.10, intron 2 of 29) protein_coding-intron (ENSMUSG00000022521.10, intron 2 of 30) 6219 ENSMUSG00000103937.1 ENSMUSG00000103937 ENSMUST00000195629 Gm37186 TEC Interval_30734 chr11 96183775 96184413 + 0 NA Intergenic Intergenic 6543 ENSMUSG00000086337.1 ENSMUSG00000086337 ENSMUST00000145517 Gm11535 lincRNA Interval_80213 chr18 38310988 38311942 + 0 NA intron (ENSMUSG00000060450.14, intron 5 of 7) protein_coding-intron (ENSMUSG00000060450.14, intron 6 of 8) 13526 ENSMUSG00000089296.1 ENSMUSG00000089296 ENSMUST00000158671 Gm23205 snRNA Interval_101713 chr3 9081741 9083016 + 0 NA Intergenic Intergenic 9611 ENSMUSG00000103011.1 ENSMUSG00000103011 ENSMUST00000193160 Gm8860 processed_pseudogene Interval_28838 chr11 78662663 78663094 + 0 NA intron (ENSMUSG00000017376.15, intron 1 of 2) protein_coding-intron (ENSMUSG00000017376.15, intron 1 of 10) 46883 ENSMUSG00000085115.1 ENSMUSG00000085115 ENSMUST00000145158 Gm11197 processed_pseudogene Interval_165110 chr9 44620564 44620733 + 0 NA exon (ENSMUSG00000111264.1, exon 1 of 1) TEC-exon (ENSMUSG00000111264.1, exon 1 of 1) 2395 ENSMUSG00000111264.1 ENSMUSG00000111264 ENSMUST00000215131 E030022I16Rik TEC Interval_95389 chr2 107813986 107814732 + 0 NA Intergenic Intergenic 72280 ENSMUSG00000077480.1 ENSMUSG00000077480 ENSMUST00000104292 Gm23439 snoRNA Interval_168702 chr9 86119739 86120212 + 0 NA Intergenic Intergenic 56040 ENSMUSG00000111418.1 ENSMUSG00000111418 ENSMUST00000216119 Gm18016 processed_pseudogene Interval_155353 chr8 32209298 32210301 + 0 NA intron (ENSMUSG00000062991.9, intron 1 of 12) protein_coding-intron (ENSMUSG00000062991.9, intron 1 of 8) 23670 ENSMUSG00000089370.1 ENSMUSG00000089370 ENSMUST00000158745 Gm22140 snRNA Interval_127476 chr5 104292972 104293661 + 0 NA Intergenic Intergenic -3872 ENSMUSG00000094432.1 ENSMUSG00000094432 ENSMUST00000177797 Gm23616 miRNA Interval_12810 chr10 5783018 5783566 + 0 NA Intergenic Intergenic 21308 ENSMUSG00000019773.7 ENSMUSG00000019773 ENSMUST00000142200 Fbxo5 protein_coding Interval_170515 chr9 108449951 108450566 + 0 NA TTS (ENSMUSG00000032609.12) protein_coding-TTS (ENSMUSG00000032609.12) 9820 ENSMUSG00000032609.12 ENSMUSG00000032609 ENSMUST00000193618 Klhdc8b protein_coding Interval_567 chr1 7502135 7503181 + 0 NA intron (ENSMUSG00000103067.1, intron 2 of 2) lincRNA-intron (ENSMUSG00000103067.1, intron 2 of 2) 4690 ENSMUSG00000103067.1 ENSMUSG00000103067 ENSMUST00000194886 Gm30414 lincRNA Interval_71650 chr17 25133098 25134128 + 0 NA exon (ENSMUSG00000036636.10, exon 1 of 25) protein_coding-exon (ENSMUSG00000036636.10, exon 1 of 25) 222 ENSMUSG00000036636.10 ENSMUSG00000036636 ENSMUST00000159426 Clcn7 protein_coding Interval_28732 chr11 77974020 77974328 + 0 NA exon (ENSMUSG00000000632.13, exon 8 of 15) protein_coding-exon (ENSMUSG00000000632.13, exon 8 of 15) 43135 ENSMUSG00000000632.13 ENSMUSG00000000632 ENSMUST00000126866 Sez6 protein_coding Interval_135743 chr6 46287287 46288212 + 0 NA intron (ENSMUSG00000039419.17, intron 2 of 4) protein_coding-intron (ENSMUSG00000039419.17, intron 10 of 23) -126007 ENSMUSG00000107442.1 ENSMUSG00000107442 ENSMUST00000203051 Gm43881 TEC Interval_2313 chr1 37971401 37971577 + 0 NA Intergenic Intergenic -2478 ENSMUSG00000089141.1 ENSMUSG00000089141 ENSMUST00000158516 Gm23409 misc_RNA Interval_133364 chr6 3763274 3764809 + 0 NA promoter-TSS (ENSMUSG00000023964.15) protein_coding-promoter-TSS (ENSMUSG00000023964.15) -411 ENSMUSG00000023964.15 ENSMUSG00000023964 ENSMUST00000170266 Calcr protein_coding Interval_117737 chr4 125929255 125930282 + 0 NA Intergenic Intergenic -7351 ENSMUSG00000085562.7 ENSMUSG00000085562 ENSMUST00000144539 2610028E06Rik lincRNA Interval_38516 chr12 79804600 79806197 + 0 NA intron (ENSMUSG00000059060.15, intron 10 of 10) protein_coding-intron (ENSMUSG00000059060.15, intron 10 of 10) 120096 ENSMUSG00000112765.1 ENSMUSG00000112765 ENSMUST00000219857 9430078K24Rik lincRNA Interval_149817 chr7 101805638 101805965 + 0 NA Intergenic Intergenic -14945 ENSMUSG00000007946.11 ENSMUSG00000007946 ENSMUST00000209878 Phox2a protein_coding Interval_40831 chr12 108733721 108734889 + 0 NA Intergenic Intergenic 3321 ENSMUSG00000114102.1 ENSMUSG00000114102 ENSMUST00000222878 Gm48048 processed_pseudogene Interval_59441 chr15 53184072 53184682 + 0 NA intron (ENSMUSG00000061731.9, intron 1 of 10) protein_coding-intron (ENSMUSG00000061731.9, intron 1 of 10) -76509 ENSMUSG00000061731.9 ENSMUSG00000061731 ENSMUST00000140798 Ext1 protein_coding Interval_62279 chr15 89416315 89417388 + 0 NA exon (ENSMUSG00000116461.1, exon 27 of 27) protein_coding-exon (ENSMUSG00000116461.1, exon 27 of 27) 4550 ENSMUSG00000078937.8 ENSMUSG00000078937 ENSMUST00000168376 Cpt1b protein_coding Interval_123064 chr5 29355528 29357301 + 0 NA intron (ENSMUSG00000010721.15, intron 2 of 14) protein_coding-intron (ENSMUSG00000010721.15, intron 3 of 16) -19568 ENSMUSG00000093302.1 ENSMUSG00000093302 ENSMUST00000175561 Gm23801 miRNA Interval_128554 chr5 113985845 113987460 + 0 NA intron (ENSMUSG00000042121.16, intron 2 of 3) protein_coding-intron (ENSMUSG00000042121.16, intron 1 of 13) -19896 ENSMUSG00000042121.16 ENSMUSG00000042121 ENSMUST00000162322 Ssh1 protein_coding Interval_158497 chr8 84073399 84073739 + 0 NA intron (ENSMUSG00000031706.7, intron 1 of 20) protein_coding-intron (ENSMUSG00000031706.7, intron 1 of 20) -6282 ENSMUSG00000056753.3 ENSMUSG00000056753 ENSMUST00000071067 C330011M18Rik antisense Interval_7444 chr1 131388491 131388769 + 0 NA intron (ENSMUSG00000026425.15, intron 4 of 4) protein_coding-intron (ENSMUSG00000026425.15, intron 4 of 22) -10099 ENSMUSG00000104060.1 ENSMUSG00000104060 ENSMUST00000195400 Gm37954 TEC Interval_84465 chr19 11298564 11300198 + 0 NA exon (ENSMUSG00000097091.1, exon 3 of 3) antisense-exon (ENSMUSG00000097091.1, exon 3 of 3) 15073 ENSMUSG00000099398.1 ENSMUSG00000099398 ENSMUST00000187467 Ms4a14 protein_coding Interval_169406 chr9 97012884 97013954 + 0 NA intron (ENSMUSG00000046997.5, intron 1 of 1) protein_coding-intron (ENSMUSG00000046997.5, intron 1 of 2) -2547 ENSMUSG00000085541.1 ENSMUSG00000085541 ENSMUST00000124366 Gm16010 antisense Interval_95399 chr2 108245816 108246007 + 0 NA intron (ENSMUSG00000086758.1, intron 2 of 2) lincRNA-intron (ENSMUSG00000086758.1, intron 2 of 2) 45408 ENSMUSG00000086758.1 ENSMUSG00000086758 ENSMUST00000156541 Gm13912 lincRNA Interval_160164 chr8 106862434 106864035 + 0 NA Intergenic Intergenic -7602 ENSMUSG00000031910.14 ENSMUSG00000031910 ENSMUST00000175987 Has3 protein_coding Interval_111057 chr4 11545621 11546641 + 0 NA exon (ENSMUSG00000040720.15, exon 22 of 24) protein_coding-exon (ENSMUSG00000040720.15, exon 22 of 24) -30512 ENSMUSG00000078773.11 ENSMUSG00000078773 ENSMUST00000144499 Rad54b protein_coding Interval_156750 chr8 57883038 57884129 + 0 NA intron (ENSMUSG00000096914.3, intron 8 of 12) protein_coding-intron (ENSMUSG00000096914.3, intron 3 of 7) -8160 ENSMUSG00000109753.1 ENSMUSG00000109753 ENSMUST00000210669 Gm45633 TEC Interval_162306 chr8 126944894 126946378 + 0 NA promoter-TSS (ENSMUSG00000065637.1) snoRNA-promoter-TSS (ENSMUSG00000065637.1) 208 ENSMUSG00000093904.2 ENSMUSG00000093904 ENSMUST00000212771 Tomm20 protein_coding Interval_102599 chr3 28176248 28176952 + 0 NA promoter-TSS (ENSMUSG00000109716.1) lincRNA-promoter-TSS (ENSMUSG00000109716.1) 47 ENSMUSG00000109716.1 ENSMUSG00000109716 ENSMUST00000209618 Gm42196 lincRNA Interval_96376 chr2 122049109 122049870 + 0 NA intron (ENSMUSG00000027236.8, intron 5 of 7) protein_coding-intron (ENSMUSG00000027236.8, intron 5 of 7) 20837 ENSMUSG00000027236.8 ENSMUSG00000027236 ENSMUST00000142747 Eif3j1 protein_coding Interval_49305 chr13 110474884 110475098 + 0 NA Intergenic Intergenic 78979 ENSMUSG00000021701.8 ENSMUSG00000021701 ENSMUST00000225156 Plk2 protein_coding Interval_28158 chr11 73309376 73309770 + 0 NA intron (ENSMUSG00000020774.9, intron 5 of 6) protein_coding-intron (ENSMUSG00000020774.9, intron 4 of 5) 20023 ENSMUSG00000020774.9 ENSMUSG00000020774 ENSMUST00000141898 Aspa protein_coding Interval_172982 chrX 59928865 59929242 + 0 NA Intergenic Intergenic -61300 ENSMUSG00000083366.1 ENSMUSG00000083366 ENSMUST00000119522 Gm14887 processed_pseudogene Interval_116999 chr4 118898118 118898407 + 0 NA TTS (ENSMUSG00000073768.3) protein_coding-TTS (ENSMUSG00000073768.3) 9665 ENSMUSG00000073768.3 ENSMUSG00000073768 ENSMUST00000094830 Olfr1330 protein_coding Interval_31375 chr11 100318624 100320848 + 0 NA promoter-TSS (ENSMUSG00000035530.13) protein_coding-promoter-TSS (ENSMUSG00000035530.13) -972 ENSMUSG00000035530.13 ENSMUSG00000035530 ENSMUST00000132618 Eif1 protein_coding Interval_167529 chr9 70261710 70261915 + 0 NA intron (ENSMUSG00000032220.10, intron 1 of 17) protein_coding-intron (ENSMUSG00000032220.10, intron 1 of 27) 54462 ENSMUSG00000032220.10 ENSMUSG00000032220 ENSMUST00000034745 Myo1e protein_coding Interval_171956 chr9 122939703 122939957 + 0 NA TTS (ENSMUSG00000111163.1) transcribed_unprocessed_pseudogene-TTS (ENSMUSG00000111163.1) -2700 ENSMUSG00000111428.1 ENSMUSG00000111428 ENSMUST00000214278 Gm47146 transcribed_processed_pseudogene Interval_5481 chr1 89150965 89151232 + 0 NA intron (ENSMUSG00000036206.12, intron 4 of 5) protein_coding-intron (ENSMUSG00000036206.12, intron 4 of 5) 54025 ENSMUSG00000102700.1 ENSMUSG00000102700 ENSMUST00000195426 Gm38312 TEC Interval_161618 chr8 121602616 121603328 + 0 NA intron (ENSMUSG00000061410.6, intron 12 of 12) protein_coding-intron (ENSMUSG00000061410.6, intron 12 of 12) 1542 ENSMUSG00000061410.6 ENSMUSG00000061410 ENSMUST00000134212 Zcchc14 protein_coding Interval_169596 chr9 99368232 99369401 + 0 NA TTS (ENSMUSG00000100123.1) lincRNA-TTS (ENSMUSG00000100123.1) 1783 ENSMUSG00000100123.1 ENSMUSG00000100123 ENSMUST00000189195 Gm28087 lincRNA Interval_80511 chr18 43148615 43148867 + 0 NA intron (ENSMUSG00000117792.1, intron 1 of 9) processed_transcript-intron (ENSMUSG00000117792.1, intron 1 of 9) -22418 ENSMUSG00000048188.6 ENSMUSG00000048188 ENSMUST00000062242 Gm8181 processed_pseudogene Interval_153068 chr7 141162139 141162550 + 0 NA intron (ENSMUSG00000038650.15, intron 8 of 9) protein_coding-intron (ENSMUSG00000038650.15, intron 8 of 9) 5847 ENSMUSG00000038650.15 ENSMUSG00000038650 ENSMUST00000210979 Rnh1 protein_coding Interval_48204 chr13 97166733 97166938 + 0 NA intron (ENSMUSG00000021666.16, intron 15 of 15) protein_coding-intron (ENSMUSG00000021666.16, intron 15 of 20) 28827 ENSMUSG00000021666.16 ENSMUSG00000021666 ENSMUST00000159321 Gfm2 protein_coding Interval_104801 chr3 73851312 73851574 + 0 NA Intergenic Intergenic -81603 ENSMUSG00000102859.1 ENSMUSG00000102859 ENSMUST00000194185 Gm8625 processed_pseudogene Interval_160061 chr8 106115555 106116159 + 0 NA intron (ENSMUSG00000031902.10, intron 9 of 9) protein_coding-intron (ENSMUSG00000031902.10, intron 9 of 9) 20828 ENSMUSG00000084128.10 ENSMUSG00000084128 ENSMUST00000155164 Esrp2 protein_coding Interval_74428 chr17 50292646 50294115 + 0 NA promoter-TSS (ENSMUSG00000010592.9) protein_coding-promoter-TSS (ENSMUSG00000010592.9) -10057 ENSMUSG00000010592.9 ENSMUSG00000010592 ENSMUST00000232875 Dazl protein_coding Interval_173206 chrX 74219060 74221695 + 0 NA Intergenic Intergenic 20926 ENSMUSG00000031328.16 ENSMUSG00000031328 ENSMUST00000239316 Flna protein_coding Interval_7674 chr1 132970580 132970812 + 0 NA intron (ENSMUSG00000054387.13, intron 2 of 2) protein_coding-intron (ENSMUSG00000054387.13, intron 10 of 10) -25376 ENSMUSG00000102709.1 ENSMUSG00000102709 ENSMUST00000194934 Gm38308 TEC Interval_111494 chr4 22151799 22153339 + 0 NA Intergenic Intergenic -35037 ENSMUSG00000082490.1 ENSMUSG00000082490 ENSMUST00000117612 Gm11880 processed_pseudogene Interval_137909 chr6 83297693 83298494 + 0 NA intron (ENSMUSG00000068323.12, intron 22 of 23) protein_coding-intron (ENSMUSG00000068323.12, intron 22 of 24) 18850 ENSMUSG00000108053.1 ENSMUSG00000108053 ENSMUST00000203437 Gm43890 TEC Interval_115792 chr4 104455258 104455895 + 0 NA intron (ENSMUSG00000028519.16, intron 1 of 14) protein_coding-intron (ENSMUSG00000028519.16, intron 3 of 9) -149720 ENSMUSG00000028519.16 ENSMUSG00000028519 ENSMUST00000149672 Dab1 protein_coding Interval_135998 chr6 49338443 49339701 + 0 NA intron (ENSMUSG00000050786.8, intron 2 of 2) protein_coding-intron (ENSMUSG00000050786.8, intron 2 of 2) 19765 ENSMUSG00000050786.8 ENSMUSG00000050786 ENSMUST00000114491 Ccdc126 protein_coding Interval_159670 chr8 96406177 96406651 + 0 NA Intergenic Intergenic -2552 ENSMUSG00000110633.1 ENSMUSG00000110633 ENSMUST00000212119 Gm32122 lincRNA Interval_102029 chr3 15270742 15270934 + 0 NA Intergenic Intergenic 61464 ENSMUSG00000078783.1 ENSMUSG00000078783 ENSMUST00000108361 Gm9733 protein_coding Interval_102367 chr3 22276881 22277395 + 0 NA Intergenic Intergenic 20692 ENSMUSG00000102987.1 ENSMUSG00000102987 ENSMUST00000194390 Gm38324 lincRNA Interval_53102 chr14 54463713 54464972 + 0 NA exon (ENSMUSG00000022175.9, exon 1 of 7) protein_coding-exon (ENSMUSG00000022175.9, exon 1 of 7) 400 ENSMUSG00000115767.1 ENSMUSG00000115767 ENSMUST00000226346 Gm10366 antisense Interval_45693 chr13 57012707 57013172 + 0 NA Intergenic Intergenic -81991 ENSMUSG00000077279.1 ENSMUSG00000077279 ENSMUST00000104091 Gm22777 snoRNA Interval_15293 chr10 44267852 44268833 + 0 NA promoter-TSS (ENSMUSG00000038160.7) protein_coding-promoter-TSS (ENSMUSG00000038160.7) -73 ENSMUSG00000038160.7 ENSMUSG00000038160 ENSMUST00000217412 Atg5 protein_coding Interval_13136 chr10 12199144 12199371 + 0 NA Intergenic Intergenic 125404 ENSMUSG00000112156.1 ENSMUSG00000112156 ENSMUST00000219252 Gm48723 lincRNA Interval_83048 chr18 80770609 80770922 + 0 NA intron (ENSMUSG00000024566.10, intron 4 of 4) protein_coding-intron (ENSMUSG00000024566.10, intron 15 of 29) -10778 ENSMUSG00000024566.10 ENSMUSG00000024566 ENSMUST00000225345 Atp9b protein_coding Interval_57148 chr15 6977790 6978289 + 0 NA Intergenic Intergenic -17998 ENSMUSG00000104334.1 ENSMUSG00000104334 ENSMUST00000192751 Gm38282 TEC Interval_104687 chr3 69409158 69409542 + 0 NA intron (ENSMUSG00000027784.10, intron 1 of 3) protein_coding-intron (ENSMUSG00000027784.10, intron 1 of 3) 23018 ENSMUSG00000090743.1 ENSMUSG00000090743 ENSMUST00000165161 Gm17213 processed_pseudogene Interval_18089 chr10 82257047 82257811 + 0 NA Intergenic Intergenic 9445 ENSMUSG00000111930.1 ENSMUSG00000111930 ENSMUST00000219873 Gm47382 processed_pseudogene Interval_104548 chr3 67594657 67595350 + 0 NA intron (ENSMUSG00000027775.9, intron 8 of 8) protein_coding-intron (ENSMUSG00000027775.9, intron 9 of 15) 10257 ENSMUSG00000027775.9 ENSMUSG00000027775 ENSMUST00000192776 Mfsd1 protein_coding Interval_148091 chr7 79182744 79183960 + 0 NA Intergenic Intergenic -35121 ENSMUSG00000030605.15 ENSMUSG00000030605 ENSMUST00000206844 Mfge8 protein_coding Interval_98736 chr2 154586374 154587203 + 0 NA exon (ENSMUSG00000000876.11, exon 4 of 4) protein_coding-exon (ENSMUSG00000000876.11, exon 4 of 4) -16896 ENSMUSG00000027490.17 ENSMUSG00000027490 ENSMUST00000000894 E2f1 protein_coding Interval_64933 chr16 17328204 17328394 + 0 NA intron (ENSMUSG00000041720.14, intron 2 of 10) protein_coding-intron (ENSMUSG00000041720.14, intron 19 of 54) -3084 ENSMUSG00000022766.14 ENSMUSG00000022766 ENSMUST00000231884 Serpind1 protein_coding Interval_36513 chr12 48019652 48021201 + 0 NA Intergenic Intergenic 27108 ENSMUSG00000111984.1 ENSMUSG00000111984 ENSMUST00000218240 Gm46327 unprocessed_pseudogene Interval_58490 chr15 35183386 35183790 + 0 NA Intergenic Intergenic -17216 ENSMUSG00000115345.1 ENSMUSG00000115345 ENSMUST00000228112 Gm33497 lincRNA Interval_67504 chr16 49980034 49980713 + 0 NA Intergenic Intergenic 124728 ENSMUSG00000055447.19 ENSMUSG00000055447 ENSMUST00000229104 Cd47 protein_coding Interval_121226 chr4 154207240 154207691 + 0 NA intron (ENSMUSG00000057751.14, intron 3 of 36) protein_coding-intron (ENSMUSG00000057751.14, intron 3 of 36) -13076 ENSMUSG00000081276.1 ENSMUSG00000081276 ENSMUST00000121194 Gm13132 processed_pseudogene Interval_38662 chr12 80917475 80918209 + 0 NA Intergenic Intergenic 6365 ENSMUSG00000065115.1 ENSMUSG00000065115 ENSMUST00000083181 Gm23298 snRNA Interval_6298 chr1 105663180 105664724 + 0 NA promoter-TSS (ENSMUSG00000026319.13) protein_coding-promoter-TSS (ENSMUSG00000026319.13) -275 ENSMUSG00000056536.14 ENSMUSG00000056536 ENSMUST00000185209 Pign protein_coding Interval_1348 chr1 20867021 20868845 + 0 NA Intergenic Intergenic 22540 ENSMUSG00000097934.1 ENSMUSG00000097934 ENSMUST00000181654 6720483E21Rik lincRNA Interval_61106 chr15 79260726 79262180 + 0 NA promoter-TSS (ENSMUSG00000018126.15) protein_coding-promoter-TSS (ENSMUSG00000018126.15) 5879 ENSMUSG00000091135.1 ENSMUSG00000091135 ENSMUST00000170221 Lgals1-ps2 transcribed_processed_pseudogene Interval_24268 chr11 31965246 31966506 + 0 NA exon (ENSMUSG00000020299.6, exon 1 of 5) protein_coding-exon (ENSMUSG00000020299.6, exon 1 of 5) 284 ENSMUSG00000020299.6 ENSMUSG00000020299 ENSMUST00000102829 4930524B15Rik protein_coding Interval_18131 chr10 82858503 82860854 + 0 NA promoter-TSS (ENSMUSG00000020250.10) protein_coding-promoter-TSS (ENSMUSG00000020250.10) 471 ENSMUSG00000020250.10 ENSMUSG00000020250 ENSMUST00000218724 Txnrd1 protein_coding Interval_27615 chr11 69062314 69064027 + 0 NA Intergenic Intergenic -2687 ENSMUSG00000072809.2 ENSMUSG00000072809 ENSMUST00000101007 9330160F10Rik antisense Interval_70288 chr17 8239487 8240329 + 0 NA intron (ENSMUSG00000040899.14, intron 1 of 1) protein_coding-intron (ENSMUSG00000040899.14, intron 1 of 2) -5150 ENSMUSG00000040899.14 ENSMUSG00000040899 ENSMUST00000231545 Ccr6 protein_coding Interval_29976 chr11 88485223 88486529 + 0 NA intron (ENSMUSG00000069769.13, intron 1 of 5) protein_coding-intron (ENSMUSG00000069769.13, intron 6 of 13) -52362 ENSMUSG00000084411.2 ENSMUSG00000084411 ENSMUST00000120278 Gm11510 processed_pseudogene Interval_156712 chr8 57519716 57520340 + 0 NA TTS (ENSMUSG00000109899.1) processed_pseudogene-TTS (ENSMUSG00000109899.1) 858 ENSMUSG00000109899.1 ENSMUSG00000109899 ENSMUST00000210821 Gm6012 processed_pseudogene Interval_11877 chr1 186657843 186658568 + 0 NA intron (ENSMUSG00000039239.14, intron 1 of 6) protein_coding-intron (ENSMUSG00000039239.14, intron 1 of 6) -18537 ENSMUSG00000089045.1 ENSMUSG00000089045 ENSMUST00000158420 Gm26169 snoRNA Interval_119754 chr4 139703625 139703898 + 0 NA Intergenic Intergenic 50212 ENSMUSG00000028738.14 ENSMUSG00000028738 ENSMUST00000166773 Tas1r2 protein_coding Interval_78403 chr18 12523522 12524466 + 0 NA intron (ENSMUSG00000024421.16, intron 7 of 37) protein_coding-intron (ENSMUSG00000024421.16, intron 44 of 74) -19568 ENSMUSG00000101406.1 ENSMUSG00000101406 ENSMUST00000188118 Gm29200 antisense Interval_110209 chr3 154317544 154318431 + 0 NA intron (ENSMUSG00000096225.7, intron 6 of 8) protein_coding-intron (ENSMUSG00000096225.7, intron 6 of 8) 12072 ENSMUSG00000096225.7 ENSMUSG00000096225 ENSMUST00000204403 Lhx8 protein_coding Interval_154085 chr8 12561445 12562330 + 0 NA intron (ENSMUSG00000097421.2, intron 1 of 1) bidirectional_promoter_lncRNA-intron (ENSMUSG00000097421.2, intron 1 of 1) -11142 ENSMUSG00000010435.7 ENSMUSG00000010435 ENSMUST00000209428 Spaca7 protein_coding Interval_126143 chr5 79032761 79033242 + 0 NA Intergenic Intergenic 253142 ENSMUSG00000077178.1 ENSMUSG00000077178 ENSMUST00000103990 Gm25756 snoRNA Interval_153966 chr8 11547063 11547330 + 0 NA TTS (ENSMUSG00000056228.10) protein_coding-TTS (ENSMUSG00000056228.10) 3545 ENSMUSG00000056228.10 ENSMUSG00000056228 ENSMUST00000211734 Cars2 protein_coding Interval_80957 chr18 51029157 51029864 + 0 NA Intergenic Intergenic 26406 ENSMUSG00000118088.1 ENSMUSG00000118088 ENSMUST00000236182 Gm3815 processed_pseudogene Interval_43884 chr13 37843985 37844344 + 0 NA intron (ENSMUSG00000039087.17, intron 1 of 9) protein_coding-intron (ENSMUSG00000039087.17, intron 1 of 9) -44374 ENSMUSG00000114370.1 ENSMUSG00000114370 ENSMUST00000224624 Gm46411 antisense Interval_149049 chr7 92668841 92670657 + 0 NA exon (ENSMUSG00000041328.16, exon 1 of 16) protein_coding-exon (ENSMUSG00000041328.16, exon 1 of 16) 154 ENSMUSG00000041328.16 ENSMUSG00000041328 ENSMUST00000208058 Pcf11 protein_coding Interval_152784 chr7 137495104 137495795 + 0 NA Intergenic Intergenic 57784 ENSMUSG00000031068.8 ENSMUSG00000031068 ENSMUST00000211598 Glrx3 protein_coding Interval_66054 chr16 31286385 31286944 + 0 NA exon (ENSMUSG00000116617.1, exon 2 of 2) lincRNA-exon (ENSMUSG00000116617.1, exon 2 of 2) 5232 ENSMUSG00000116617.1 ENSMUSG00000116617 ENSMUST00000232175 Gm49767 lincRNA Interval_24198 chr11 31227200 31227413 + 0 NA Intergenic Intergenic -42932 ENSMUSG00000079890.2 ENSMUSG00000079890 ENSMUST00000116006 Gm12106 unprocessed_pseudogene Interval_119155 chr4 135885569 135885935 + 0 NA Intergenic Intergenic 5725 ENSMUSG00000083430.1 ENSMUSG00000083430 ENSMUST00000118683 Gm13006 processed_pseudogene Interval_5470 chr1 89088681 89088952 + 0 NA intron (ENSMUSG00000036206.12, intron 1 of 2) protein_coding-intron (ENSMUSG00000036206.12, intron 1 of 5) -8257 ENSMUSG00000102700.1 ENSMUSG00000102700 ENSMUST00000195426 Gm38312 TEC Interval_44685 chr13 47147286 47148703 + 0 NA intron (ENSMUSG00000114961.1, intron 1 of 2) protein_coding-intron (ENSMUSG00000038068.15, intron 1 of 7) 676 ENSMUSG00000114961.1 ENSMUSG00000114961 ENSMUST00000224519 A930002C04Rik antisense Interval_124522 chr5 50009391 50009606 + 0 NA promoter-TSS (ENSMUSG00000029090.12) protein_coding-promoter-TSS (ENSMUSG00000029090.12) 49147 ENSMUSG00000029090.12 ENSMUSG00000029090 ENSMUST00000199132 Adgra3 protein_coding Interval_172131 chrX 7821707 7823138 + 0 NA exon (ENSMUSG00000009731.4, exon 1 of 6) protein_coding-exon (ENSMUSG00000009731.4, exon 1 of 6) 115 ENSMUSG00000009731.4 ENSMUSG00000009731 ENSMUST00000125440 Kcnd1 protein_coding Interval_840 chr1 12454701 12455295 + 0 NA Intergenic Intergenic 29012 ENSMUSG00000098555.1 ENSMUSG00000098555 ENSMUST00000183490 Mir6341 miRNA Interval_156881 chr8 61415866 61417557 + 0 NA Intergenic Intergenic -35324 ENSMUSG00000109610.1 ENSMUSG00000109610 ENSMUST00000210343 Gm7432 processed_pseudogene Interval_116426 chr4 111731867 111732767 + 0 NA intron (ENSMUSG00000034401.16, intron 1 of 4) protein_coding-intron (ENSMUSG00000034401.16, intron 1 of 12) 12254 ENSMUSG00000034401.16 ENSMUSG00000034401 ENSMUST00000132802 Spata6 protein_coding Interval_91433 chr2 38817409 38818066 + 0 NA intron (ENSMUSG00000063972.13, intron 2 of 5) protein_coding-intron (ENSMUSG00000063972.13, intron 3 of 10) -5604 ENSMUSG00000085201.1 ENSMUSG00000085201 ENSMUST00000151229 Nr6a1os antisense Interval_167145 chr9 65635631 65636279 + 0 NA intron (ENSMUSG00000032387.15, intron 1 of 4) protein_coding-intron (ENSMUSG00000032387.15, intron 1 of 7) -23022 ENSMUSG00000032387.15 ENSMUSG00000032387 ENSMUST00000216769 Rbpms2 protein_coding Interval_13951 chr10 24934461 24934666 + 0 NA Intergenic Intergenic 6944 ENSMUSG00000112758.1 ENSMUSG00000112758 ENSMUST00000219852 Gm36172 bidirectional_promoter_lncRNA Interval_142983 chr6 148001019 148001352 + 0 NA Intergenic Intergenic 46154 ENSMUSG00000086777.3 ENSMUSG00000086777 ENSMUST00000149815 Far2os2 antisense Interval_158373 chr8 83151909 83152675 + 0 NA Intergenic Intergenic 13878 ENSMUSG00000074228.3 ENSMUSG00000074228 ENSMUST00000238241 Gm10645 TEC Interval_87853 chr19 56581485 56583004 + 0 NA intron (ENSMUSG00000025078.9, intron 3 of 5) protein_coding-intron (ENSMUSG00000025078.9, intron 5 of 10) 11447 ENSMUSG00000025078.9 ENSMUSG00000025078 ENSMUST00000236979 Nhlrc2 protein_coding Interval_59456 chr15 53275771 53276568 + 0 NA intron (ENSMUSG00000061731.9, intron 1 of 10) protein_coding-intron (ENSMUSG00000061731.9, intron 1 of 10) -107750 ENSMUSG00000087805.2 ENSMUSG00000087805 ENSMUST00000157180 Gm27926 snRNA Interval_12327 chr1 191781650 191781955 + 0 NA exon (ENSMUSG00000026623.16, exon 8 of 8) protein_coding-exon (ENSMUSG00000026623.16, exon 8 of 8) -8968 ENSMUSG00000064845.1 ENSMUSG00000064845 ENSMUST00000082911 Gm26203 snRNA Interval_9859 chr1 163314692 163315236 + 0 NA Intergenic Intergenic -5897 ENSMUSG00000103195.1 ENSMUSG00000103195 ENSMUST00000192190 Gm37644 TEC Interval_101577 chr3 7010499 7011205 + 0 NA Intergenic Intergenic 33584 ENSMUSG00000089220.1 ENSMUSG00000089220 ENSMUST00000158595 Gm22074 snoRNA Interval_54334 chr14 67760365 67761325 + 0 NA intron (ENSMUSG00000044447.5, intron 2 of 5) protein_coding-intron (ENSMUSG00000044447.5, intron 48 of 51) 4114 ENSMUSG00000044447.5 ENSMUSG00000044447 ENSMUST00000224823 Dock5 protein_coding Interval_144086 chr7 19368287 19368804 + 0 NA promoter-TSS (ENSMUSG00000040734.14) protein_coding-promoter-TSS (ENSMUSG00000040734.14) 8796 ENSMUSG00000040734.14 ENSMUSG00000040734 ENSMUST00000132655 Ppp1r13l protein_coding Interval_133811 chr6 12592120 12592366 + 0 NA intron (ENSMUSG00000032625.14, intron 1 of 27) protein_coding-intron (ENSMUSG00000032625.14, intron 1 of 27) -16753 ENSMUSG00000107422.1 ENSMUSG00000107422 ENSMUST00000203511 Gm44129 lincRNA Interval_11555 chr1 182668105 182668379 + 0 NA Intergenic Intergenic -11697 ENSMUSG00000104376.1 ENSMUSG00000104376 ENSMUST00000192593 Gm37516 TEC Interval_138007 chr6 84114179 84115259 + 0 NA intron (ENSMUSG00000033788.15, intron 29 of 55) protein_coding-intron (ENSMUSG00000033788.15, intron 29 of 54) -7712 ENSMUSG00000087001.2 ENSMUSG00000087001 ENSMUST00000137673 Gm15475 antisense Interval_5575 chr1 89921911 89923870 + 0 NA Intergenic Intergenic 6295 ENSMUSG00000034486.8 ENSMUSG00000034486 ENSMUST00000187633 Gbx2 protein_coding Interval_148695 chr7 84236048 84236884 + 0 NA Intergenic Intergenic -3547 ENSMUSG00000109091.1 ENSMUSG00000109091 ENSMUST00000207963 Gm44827 lincRNA Interval_93224 chr2 71296064 71297306 + 0 NA exon (ENSMUSG00000027010.16, exon 11 of 18) protein_coding-exon (ENSMUSG00000027010.16, exon 11 of 18) -23098 ENSMUSG00000082190.1 ENSMUSG00000082190 ENSMUST00000117993 Gm13641 processed_pseudogene Interval_160985 chr8 116655235 116655474 + 0 NA intron (ENSMUSG00000031758.10, intron 1 of 6) protein_coding-intron (ENSMUSG00000031758.10, intron 1 of 6) 77637 ENSMUSG00000031758.10 ENSMUSG00000031758 ENSMUST00000109102 Cdyl2 protein_coding Interval_109077 chr3 135595712 135595998 + 0 NA intron (ENSMUSG00000028163.17, intron 17 of 24) protein_coding-intron (ENSMUSG00000028163.17, intron 17 of 24) 8004 ENSMUSG00000028163.17 ENSMUSG00000028163 ENSMUST00000196246 Nfkb1 protein_coding Interval_151685 chr7 126026797 126027087 + 0 NA intron (ENSMUSG00000046182.8, intron 1 of 6) protein_coding-intron (ENSMUSG00000046182.8, intron 1 of 6) 37505 ENSMUSG00000108376.1 ENSMUSG00000108376 ENSMUST00000206586 Gm44874 TEC Interval_70664 chr17 12896131 12897205 + 0 NA promoter-TSS (ENSMUSG00000117072.1) antisense-promoter-TSS (ENSMUSG00000117072.1) -869 ENSMUSG00000117072.1 ENSMUSG00000117072 ENSMUST00000233153 Gm49926 antisense Interval_19704 chr10 108200770 108201511 + 0 NA intron (ENSMUSG00000019907.10, intron 2 of 24) protein_coding-intron (ENSMUSG00000019907.10, intron 2 of 25) -48454 ENSMUSG00000019907.10 ENSMUSG00000019907 ENSMUST00000219559 Ppp1r12a protein_coding Interval_58619 chr15 36602187 36602633 + 0 NA promoter-TSS (ENSMUSG00000022283.15) protein_coding-promoter-TSS (ENSMUSG00000022283.15) 3056 ENSMUSG00000022283.15 ENSMUSG00000022283 ENSMUST00000226496 Pabpc1 protein_coding Interval_123396 chr5 32191795 32192044 + 0 NA Intergenic Intergenic 6422 ENSMUSG00000107220.1 ENSMUSG00000107220 ENSMUST00000200908 Gm9555 processed_pseudogene Interval_24577 chr11 34770430 34770877 + 0 NA intron (ENSMUSG00000020143.15, intron 1 of 26) protein_coding-intron (ENSMUSG00000020143.15, intron 1 of 51) 53298 ENSMUSG00000069910.2 ENSMUSG00000069910 ENSMUST00000148387 Spdl1 protein_coding Interval_52037 chr14 34752594 34753000 + 0 NA Intergenic Intergenic -7430 ENSMUSG00000097310.2 ENSMUSG00000097310 ENSMUST00000181044 A930038B10Rik lincRNA Interval_36549 chr12 49369106 49369323 + 0 NA exon (ENSMUSG00000112763.1, exon 3 of 3) lincRNA-exon (ENSMUSG00000112763.1, exon 3 of 3) 12671 ENSMUSG00000112763.1 ENSMUSG00000112763 ENSMUST00000218927 Gm34304 lincRNA Interval_48886 chr13 104378162 104378352 + 0 NA intron (ENSMUSG00000046169.10, intron 12 of 24) protein_coding-intron (ENSMUSG00000046169.10, intron 11 of 24) 90422 ENSMUSG00000046169.10 ENSMUSG00000046169 ENSMUST00000224504 Adamts6 protein_coding Interval_128811 chr5 115398022 115398754 + 0 NA intron (ENSMUSG00000087292.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000087292.1, intron 1 of 2) 24112 ENSMUSG00000106887.1 ENSMUSG00000106887 ENSMUST00000201293 A930005G22Rik TEC Interval_109185 chr3 137752462 137753476 + 0 NA Intergenic Intergenic 30646 ENSMUSG00000099011.1 ENSMUSG00000099011 ENSMUST00000184334 Mir6380 miRNA Interval_83920 chr19 5601690 5602845 + 0 NA promoter-TSS (ENSMUSG00000024925.11) protein_coding-promoter-TSS (ENSMUSG00000024925.11) 331 ENSMUSG00000024925.11 ENSMUSG00000024925 ENSMUST00000133953 Rnaseh2c protein_coding Interval_88748 chr2 10262467 10263346 + 0 NA Intergenic Intergenic 109335 ENSMUSG00000025780.7 ENSMUSG00000025780 ENSMUST00000026886 Itih5 protein_coding Interval_117209 chr4 120606598 120607353 + 0 NA intron (ENSMUSG00000091297.2, intron 2 of 2) protein_coding-intron (ENSMUSG00000091297.2, intron 2 of 2) -8865 ENSMUSG00000086187.1 ENSMUSG00000086187 ENSMUST00000148457 Gm12860 lincRNA Interval_170763 chr9 110596100 110596421 + 0 NA intron (ENSMUSG00000044791.16, intron 4 of 9) protein_coding-intron (ENSMUSG00000044791.16, intron 15 of 20) 22638 ENSMUSG00000044791.16 ENSMUSG00000044791 ENSMUST00000197260 Setd2 protein_coding Interval_63180 chr15 99590304 99591307 + 0 NA promoter-TSS (ENSMUSG00000044217.17) protein_coding-promoter-TSS (ENSMUSG00000044217.17) -429 ENSMUSG00000044217.17 ENSMUSG00000044217 ENSMUST00000229264 Aqp5 protein_coding Interval_138208 chr6 86307169 86307758 + 0 NA Intergenic Intergenic 22576 ENSMUSG00000098175.1 ENSMUSG00000098175 ENSMUST00000182773 Gm7545 processed_pseudogene Interval_74657 chr17 54621687 54623440 + 0 NA Intergenic Intergenic -29373 ENSMUSG00000089514.1 ENSMUSG00000089514 ENSMUST00000158889 Gm26291 snoRNA Interval_132635 chr5 146882656 146884266 + 0 NA Intergenic Intergenic 37696 ENSMUSG00000029641.8 ENSMUSG00000029641 ENSMUST00000198570 Rasl11a protein_coding Interval_68086 chr16 64906707 64907337 + 0 NA Intergenic Intergenic -4251 ENSMUSG00000097999.1 ENSMUSG00000097999 ENSMUST00000182707 Gm9061 processed_pseudogene Interval_139649 chr6 105405428 105406113 + 0 NA Intergenic Intergenic 6051 ENSMUSG00000094357.1 ENSMUSG00000094357 ENSMUST00000179099 Gm25570 miRNA Interval_63095 chr15 99039246 99040723 + 0 NA Intergenic Intergenic 9663 ENSMUSG00000043091.9 ENSMUSG00000043091 ENSMUST00000230447 Tuba1c protein_coding Interval_90346 chr2 29903281 29903808 + 0 NA promoter-TSS (ENSMUSG00000026790.19) protein_coding-promoter-TSS (ENSMUSG00000026790.19) 13746 ENSMUSG00000026790.19 ENSMUSG00000026790 ENSMUST00000152026 Odf2 protein_coding Interval_80559 chr18 44164671 44164914 + 0 NA Intergenic Intergenic -4907 ENSMUSG00000069385.10 ENSMUSG00000069385 ENSMUST00000091916 Gm10267 protein_coding Interval_144673 chr7 27442032 27442729 + 0 NA intron (ENSMUSG00000011751.16, intron 2 of 35) protein_coding-intron (ENSMUSG00000011751.16, intron 2 of 35) 5306 ENSMUSG00000011751.16 ENSMUSG00000011751 ENSMUST00000137414 Sptbn4 protein_coding Interval_90390 chr2 30136501 30137142 + 0 NA promoter-TSS (ENSMUSG00000039678.12) protein_coding-promoter-TSS (ENSMUSG00000039678.12) 3049 ENSMUSG00000039678.12 ENSMUSG00000039678 ENSMUST00000132324 Tbc1d13 protein_coding Interval_12864 chr10 6895794 6896211 + 0 NA intron (ENSMUSG00000064065.15, intron 8 of 8) protein_coding-intron (ENSMUSG00000000766.18, intron 3 of 4) 107193 ENSMUSG00000000766.18 ENSMUSG00000000766 ENSMUST00000148625 Oprm1 protein_coding Interval_89033 chr2 14824077 14824276 + 0 NA promoter-TSS (ENSMUSG00000057914.15) protein_coding-promoter-TSS (ENSMUSG00000057914.15) -11638 ENSMUSG00000085281.3 ENSMUSG00000085281 ENSMUST00000140537 Gm13316 processed_pseudogene Interval_129190 chr5 118090699 118091263 + 0 NA intron (ENSMUSG00000032867.8, intron 7 of 7) protein_coding-intron (ENSMUSG00000032867.8, intron 7 of 10) 25621 ENSMUSG00000029360.3 ENSMUSG00000029360 ENSMUST00000031305 Gm9754 antisense Interval_119267 chr4 136566760 136567159 + 0 NA intron (ENSMUSG00000036940.15, intron 6 of 10) protein_coding-intron (ENSMUSG00000036940.15, intron 8 of 16) -14417 ENSMUSG00000036940.15 ENSMUSG00000036940 ENSMUST00000170979 Kdm1a protein_coding Interval_145135 chr7 30218980 30220182 + 0 NA Intergenic Intergenic -6843 ENSMUSG00000109142.1 ENSMUSG00000109142 ENSMUST00000208540 Gm44600 processed_pseudogene Interval_108653 chr3 129823111 129824062 + 0 NA promoter-TSS (ENSMUSG00000028012.15) protein_coding-promoter-TSS (ENSMUSG00000028012.15) -1081 ENSMUSG00000028012.15 ENSMUSG00000028012 ENSMUST00000196281 Rrh protein_coding Interval_139383 chr6 99684624 99685336 + 0 NA Intergenic Intergenic -7699 ENSMUSG00000072875.2 ENSMUSG00000072875 ENSMUST00000101122 Gpr27 protein_coding Interval_46809 chr13 70978717 70980047 + 0 NA Intergenic Intergenic 92344 ENSMUSG00000102303.1 ENSMUSG00000102303 ENSMUST00000194509 Gm38191 TEC Interval_127421 chr5 103826084 103826489 + 0 NA intron (ENSMUSG00000029313.18, intron 9 of 12) protein_coding-intron (ENSMUSG00000029313.18, intron 9 of 19) 48083 ENSMUSG00000029312.12 ENSMUSG00000029312 ENSMUST00000147184 Klhl8 protein_coding Interval_99051 chr2 156870486 156871567 + 0 NA intron (ENSMUSG00000027637.3, intron 2 of 3) protein_coding-intron (ENSMUSG00000027637.3, intron 2 of 3) 7881 ENSMUSG00000027637.3 ENSMUSG00000027637 ENSMUST00000126767 Rab5if protein_coding Interval_419 chr1 5109365 5111198 + 0 NA intron (ENSMUSG00000033793.12, intron 6 of 10) protein_coding-intron (ENSMUSG00000033793.12, intron 7 of 13) 27149 ENSMUSG00000033793.12 ENSMUSG00000033793 ENSMUST00000192142 Atp6v1h protein_coding Interval_14834 chr10 40369699 40370992 + 0 NA intron (ENSMUSG00000038481.13, intron 1 of 11) protein_coding-intron (ENSMUSG00000038481.13, intron 1 of 12) -20242 ENSMUSG00000038491.9 ENSMUSG00000038491 ENSMUST00000044774 Cdk19os antisense Interval_38035 chr12 74321876 74322498 + 0 NA Intergenic Intergenic -5025 ENSMUSG00000113031.1 ENSMUSG00000113031 ENSMUST00000223381 Gm34552 lincRNA Interval_86000 chr19 34843723 34844069 + 0 NA intron (ENSMUSG00000033610.16, intron 1 of 6) protein_coding-intron (ENSMUSG00000033610.16, intron 1 of 6) -23123 ENSMUSG00000065594.1 ENSMUSG00000065594 ENSMUST00000083660 Mir107 miRNA Interval_161605 chr8 121539185 121539906 + 0 NA intron (ENSMUSG00000031809.10, intron 3 of 6) protein_coding-intron (ENSMUSG00000031809.10, intron 3 of 6) 2324 ENSMUSG00000031809.10 ENSMUSG00000031809 ENSMUST00000182460 1700018B08Rik protein_coding Interval_20140 chr10 115222997 115223479 + 0 NA intron (ENSMUSG00000020130.9, intron 5 of 16) protein_coding-intron (ENSMUSG00000020130.9, intron 5 of 16) 28015 ENSMUSG00000020130.9 ENSMUSG00000020130 ENSMUST00000219274 Tbc1d15 protein_coding Interval_13052 chr10 10474865 10475113 + 0 NA Intergenic Intergenic -2675 ENSMUSG00000050994.20 ENSMUSG00000050994 ENSMUST00000132573 Adgb protein_coding Interval_70089 chr17 5249932 5250545 + 0 NA intron (ENSMUSG00000069729.14, intron 5 of 18) protein_coding-intron (ENSMUSG00000069729.14, intron 5 of 18) -138128 ENSMUSG00000081783.2 ENSMUSG00000081783 ENSMUST00000122283 Gm15599 processed_pseudogene Interval_143298 chr7 5013009 5013353 + 0 NA promoter-TSS (ENSMUSG00000061374.14) protein_coding-promoter-TSS (ENSMUSG00000061374.14) 463 ENSMUSG00000061374.14 ENSMUSG00000061374 ENSMUST00000207412 Fiz1 protein_coding Interval_51142 chr14 24134572 24135305 + 0 NA exon (ENSMUSG00000021782.14, exon 27 of 27) protein_coding-exon (ENSMUSG00000021782.14, exon 27 of 27) 15608 ENSMUSG00000021782.14 ENSMUSG00000021782 ENSMUST00000169880 Dlg5 protein_coding Interval_12363 chr1 192579703 192580358 + 0 NA intron (ENSMUSG00000037375.16, intron 10 of 11) protein_coding-intron (ENSMUSG00000037375.16, intron 10 of 11) 145290 ENSMUSG00000058248.12 ENSMUSG00000058248 ENSMUST00000151152 Kcnh1 protein_coding Interval_33151 chr11 114785807 114786668 + 0 NA TTS (ENSMUSG00000010021.13) protein_coding-TTS (ENSMUSG00000010021.13) 9673 ENSMUSG00000000202.9 ENSMUSG00000000202 ENSMUST00000137965 Btbd17 protein_coding Interval_88083 chr19 58910988 58911862 + 0 NA TTS (ENSMUSG00000092813.1) miRNA-TTS (ENSMUSG00000092813.1) 334 ENSMUSG00000092813.1 ENSMUSG00000092813 ENSMUST00000175072 Mir3086 miRNA Interval_122903 chr5 27129221 27129509 + 0 NA intron (ENSMUSG00000061576.15, intron 1 of 25) protein_coding-intron (ENSMUSG00000061576.15, intron 1 of 25) -66590 ENSMUSG00000105946.1 ENSMUSG00000105946 ENSMUST00000199729 Gm43776 TEC Interval_52186 chr14 39274790 39274957 + 0 NA intron (ENSMUSG00000041014.17, intron 1 of 1) protein_coding-intron (ENSMUSG00000041014.17, intron 1 of 9) 54802 ENSMUSG00000093383.1 ENSMUSG00000093383 ENSMUST00000177185 Gm20642 antisense Interval_98355 chr2 151740628 151741755 + 0 NA exon (ENSMUSG00000032869.15, exon 1 of 7) protein_coding-exon (ENSMUSG00000032869.15, exon 1 of 7) 102 ENSMUSG00000032869.15 ENSMUSG00000032869 ENSMUST00000123449 Psmf1 protein_coding Interval_101427 chr2 181313045 181314636 + 0 NA intron (ENSMUSG00000027581.12, intron 1 of 4) protein_coding-intron (ENSMUSG00000027581.12, intron 1 of 4) 660 ENSMUSG00000027581.12 ENSMUSG00000027581 ENSMUST00000103045 Stmn3 protein_coding Interval_28973 chr11 79660050 79661205 + 0 NA promoter-TSS (ENSMUSG00000017639.13) protein_coding-promoter-TSS (ENSMUSG00000017639.13) 65 ENSMUSG00000017639.13 ENSMUSG00000017639 ENSMUST00000155381 Rab11fip4 protein_coding Interval_173927 chrX 112698457 112698747 + 0 NA promoter-TSS (ENSMUSG00000034607.6) protein_coding-promoter-TSS (ENSMUSG00000034607.6) 49 ENSMUSG00000034607.6 ENSMUSG00000034607 ENSMUST00000039887 Pof1b protein_coding Interval_80476 chr18 42554480 42554891 + 0 NA intron (ENSMUSG00000024498.16, intron 1 of 1) protein_coding-intron (ENSMUSG00000024498.16, intron 13 of 20) 1303 ENSMUSG00000024498.16 ENSMUSG00000024498 ENSMUST00000237162 Tcerg1 protein_coding Interval_92024 chr2 52644535 52644723 + 0 NA intron (ENSMUSG00000017412.15, intron 2 of 13) protein_coding-intron (ENSMUSG00000017412.15, intron 2 of 13) 24875 ENSMUSG00000025201.7 ENSMUSG00000025201 ENSMUST00000183232 Bloc1s2-ps processed_pseudogene Interval_13211 chr10 13102121 13103210 + 0 NA intron (ENSMUSG00000019817.18, intron 2 of 3) protein_coding-intron (ENSMUSG00000019817.18, intron 1 of 8) -10848 ENSMUSG00000098635.1 ENSMUSG00000098635 ENSMUST00000185060 Gm27741 misc_RNA Interval_13015 chr10 9311067 9311319 + 0 NA Intergenic Intergenic 25425 ENSMUSG00000112019.1 ENSMUSG00000112019 ENSMUST00000220435 Gm48748 lincRNA Interval_65243 chr16 20808227 20808451 + 0 NA Intergenic Intergenic -4954 ENSMUSG00000116922.1 ENSMUSG00000116922 ENSMUST00000231314 4833419O12Rik lincRNA Interval_142799 chr6 145794822 145795263 + 0 NA intron (ENSMUSG00000030259.12, intron 1 of 2) protein_coding-intron (ENSMUSG00000030259.12, intron 1 of 4) 44471 ENSMUSG00000030259.12 ENSMUSG00000030259 ENSMUST00000058538 Rassf8 protein_coding Interval_157476 chr8 70600963 70601856 + 0 NA TTS (ENSMUSG00000070003.7) protein_coding-TTS (ENSMUSG00000070003.7) 5442 ENSMUSG00000019139.10 ENSMUSG00000019139 ENSMUST00000211773 Isyna1 protein_coding Interval_119075 chr4 135375439 135375678 + 0 NA promoter-TSS (ENSMUSG00000043924.16) protein_coding-promoter-TSS (ENSMUSG00000043924.16) -1600 ENSMUSG00000084032.1 ENSMUSG00000084032 ENSMUST00000120561 Gm12991 processed_pseudogene Interval_21340 chr10 128066329 128066772 + 0 NA intron (ENSMUSG00000071072.12, intron 1 of 6) protein_coding-intron (ENSMUSG00000071072.12, intron 1 of 7) -2722 ENSMUSG00000071072.12 ENSMUSG00000071072 ENSMUST00000148943 Ptges3 protein_coding Interval_46310 chr13 63677190 63678080 + 0 NA promoter-TSS (ENSMUSG00000113825.1) lincRNA-promoter-TSS (ENSMUSG00000113825.1) 15838 ENSMUSG00000113700.1 ENSMUSG00000113700 ENSMUST00000221930 Gm47387 processed_pseudogene Interval_146283 chr7 45121142 45122044 + 0 NA promoter-TSS (ENSMUSG00000065495.1) miRNA-promoter-TSS (ENSMUSG00000065495.1) -164 ENSMUSG00000065495.1 ENSMUSG00000065495 ENSMUST00000083561 Mir150 miRNA Interval_172228 chrX 10991330 10993095 + 0 NA Intergenic Intergenic 28795 ENSMUSG00000083419.1 ENSMUSG00000083419 ENSMUST00000119489 Gm14485 processed_pseudogene Interval_140901 chr6 122667539 122667991 + 0 NA Intergenic Intergenic -28236 ENSMUSG00000072789.4 ENSMUSG00000072789 ENSMUST00000121713 Gm10420 processed_pseudogene Interval_93566 chr2 74426818 74427075 + 0 NA Intergenic Intergenic -119229 ENSMUSG00000085405.1 ENSMUSG00000085405 ENSMUST00000153743 4930441J16Rik lincRNA Interval_30585 chr11 95258585 95259915 + 0 NA Intergenic Intergenic -2279 ENSMUSG00000020872.4 ENSMUSG00000020872 ENSMUST00000021242 Tac4 protein_coding Interval_153345 chr7 143783670 143785299 + 0 NA promoter-TSS (ENSMUSG00000048965.9) protein_coding-promoter-TSS (ENSMUSG00000048965.9) 16 ENSMUSG00000048965.9 ENSMUSG00000048965 ENSMUST00000054048 Mrgpre protein_coding Interval_106816 chr3 101071030 101073632 + 0 NA intron (ENSMUSG00000027864.9, intron 2 of 2) protein_coding-intron (ENSMUSG00000027864.9, intron 4 of 8) 6390 ENSMUSG00000027864.9 ENSMUSG00000027864 ENSMUST00000200065 Ptgfrn protein_coding Interval_105893 chr3 89953608 89954001 + 0 NA promoter-TSS (ENSMUSG00000060671.12) protein_coding-promoter-TSS (ENSMUSG00000060671.12) -7332 ENSMUSG00000060671.12 ENSMUSG00000060671 ENSMUST00000171422 Atp8b2 protein_coding Interval_26934 chr11 61674283 61675553 + 0 NA intron (ENSMUSG00000042371.12, intron 10 of 13) protein_coding-intron (ENSMUSG00000042371.12, intron 12 of 15) 5872 ENSMUSG00000004837.2 ENSMUSG00000004837 ENSMUST00000155380 Grap protein_coding Interval_34143 chr11 120888844 120889125 + 0 NA intron (ENSMUSG00000048445.6, intron 10 of 18) protein_coding-intron (ENSMUSG00000048445.6, intron 10 of 18) -15313 ENSMUSG00000048445.6 ENSMUSG00000048445 ENSMUST00000143895 Ccdc57 protein_coding Interval_168634 chr9 84654485 84655088 + 0 NA Intergenic Intergenic 5290 ENSMUSG00000065122.1 ENSMUSG00000065122 ENSMUST00000083188 Gm26126 snRNA Interval_110774 chr4 8231777 8233266 + 0 NA intron (ENSMUSG00000041261.9, intron 2 of 8) protein_coding-intron (ENSMUSG00000041261.9, intron 2 of 8) -3061 ENSMUSG00000096388.1 ENSMUSG00000096388 ENSMUST00000178456 Gm25355 miRNA Interval_168399 chr9 80043484 80044699 + 0 NA exon (ENSMUSG00000111574.1, exon 1 of 1) processed_pseudogene-exon (ENSMUSG00000111574.1, exon 1 of 1) 125 ENSMUSG00000111574.1 ENSMUSG00000111574 ENSMUST00000217483 Gm46146 processed_pseudogene Interval_131164 chr5 135531871 135532605 + 0 NA intron (ENSMUSG00000039959.13, intron 1 of 1) protein_coding-intron (ENSMUSG00000039959.13, intron 1 of 30) 31331 ENSMUSG00000070464.1 ENSMUSG00000070464 ENSMUST00000094226 Ccl26 protein_coding Interval_134205 chr6 22802498 22803064 + 0 NA Intergenic Intergenic 2548 ENSMUSG00000107059.1 ENSMUSG00000107059 ENSMUST00000201782 Gm43629 processed_pseudogene Interval_133389 chr6 4607298 4607491 + 0 NA intron (ENSMUSG00000015189.12, intron 2 of 3) protein_coding-intron (ENSMUSG00000015189.12, intron 1 of 17) -2840 ENSMUSG00000107932.1 ENSMUSG00000107932 ENSMUST00000203342 Gm44432 TEC Interval_74637 chr17 54031281 54031693 + 0 NA Intergenic Intergenic 29115 ENSMUSG00000104810.1 ENSMUSG00000104810 ENSMUST00000198419 Gm5684 processed_pseudogene Interval_164718 chr9 40783495 40784704 + 0 NA promoter-TSS (ENSMUSG00000087135.7) processed_transcript-promoter-TSS (ENSMUSG00000087135.7) 82 ENSMUSG00000087135.7 ENSMUSG00000087135 ENSMUST00000132716 Gm16096 processed_transcript Interval_85166 chr19 23273192 23274292 + 0 NA promoter-TSS (ENSMUSG00000024943.9) protein_coding-promoter-TSS (ENSMUSG00000024943.9) -1143 ENSMUSG00000024943.9 ENSMUSG00000024943 ENSMUST00000224723 Smc5 protein_coding Interval_79269 chr18 28935731 28936110 + 0 NA intron (ENSMUSG00000117473.1, intron 6 of 6) lincRNA-intron (ENSMUSG00000117473.1, intron 1 of 2) 63704 ENSMUSG00000117473.1 ENSMUSG00000117473 ENSMUST00000234160 Gm33948 lincRNA Interval_106038 chr3 91126423 91127912 + 0 NA Intergenic Intergenic -36364 ENSMUSG00000091175.2 ENSMUSG00000091175 ENSMUST00000166173 S100a7l2 protein_coding Interval_151272 chr7 120590273 120590534 + 0 NA Intergenic Intergenic -2748 ENSMUSG00000109113.1 ENSMUSG00000109113 ENSMUST00000207884 Gm32916 lincRNA Interval_159305 chr8 93095315 93095969 + 0 NA Intergenic Intergenic -15625 ENSMUSG00000078964.2 ENSMUSG00000078964 ENSMUST00000109582 Ces1b protein_coding Interval_88902 chr2 12418133 12419825 + 0 NA intron (ENSMUSG00000026767.12, intron 1 of 5) protein_coding-intron (ENSMUSG00000026767.12, intron 1 of 14) 3047 ENSMUSG00000083547.2 ENSMUSG00000083547 ENSMUST00000117101 Gm13321 processed_pseudogene Interval_43638 chr13 34307658 34307966 + 0 NA intron (ENSMUSG00000038267.15, intron 1 of 9) protein_coding-intron (ENSMUSG00000038267.15, intron 1 of 10) -10996 ENSMUSG00000113430.1 ENSMUSG00000113430 ENSMUST00000223463 Gm47086 processed_pseudogene Interval_13274 chr10 13950490 13950843 + 0 NA Intergenic Intergenic -16358 ENSMUSG00000015501.10 ENSMUSG00000015501 ENSMUST00000191464 Hivep2 protein_coding Interval_156888 chr8 61496656 61497222 + 0 NA intron (ENSMUSG00000031641.14, intron 2 of 2) protein_coding-intron (ENSMUSG00000031641.14, intron 4 of 4) 9184 ENSMUSG00000031641.14 ENSMUSG00000031641 ENSMUST00000150932 Cbr4 protein_coding Interval_21297 chr10 127714047 127714368 + 0 NA intron (ENSMUSG00000025401.9, intron 15 of 26) protein_coding-intron (ENSMUSG00000025401.9, intron 15 of 26) -5121 ENSMUSG00000025401.9 ENSMUSG00000025401 ENSMUST00000219882 Myo1a protein_coding Interval_31449 chr11 100745029 100747068 + 0 NA intron (ENSMUSG00000035355.15, intron 12 of 16) protein_coding-intron (ENSMUSG00000035355.15, intron 12 of 16) 13894 ENSMUSG00000035355.15 ENSMUSG00000035355 ENSMUST00000107363 Kcnh4 protein_coding Interval_172318 chrX 12936153 12937934 + 0 NA exon (ENSMUSG00000083307.1, exon 1 of 1) processed_pseudogene-exon (ENSMUSG00000083307.1, exon 1 of 1) 171 ENSMUSG00000083307.1 ENSMUSG00000083307 ENSMUST00000121924 AA414768 processed_pseudogene Interval_14794 chr10 39975550 39976255 + 0 NA promoter-TSS (ENSMUSG00000038528.15) protein_coding-promoter-TSS (ENSMUSG00000038528.15) 10737 ENSMUSG00000038528.15 ENSMUSG00000038528 ENSMUST00000170505 Mfsd4b5 protein_coding Interval_127335 chr5 103143941 103144814 + 0 NA intron (ENSMUSG00000046709.18, intron 2 of 13) protein_coding-intron (ENSMUSG00000046709.18, intron 2 of 13) 66957 ENSMUSG00000046709.18 ENSMUSG00000046709 ENSMUST00000136595 Mapk10 protein_coding Interval_147493 chr7 67715801 67716246 + 0 NA intron (ENSMUSG00000030555.16, intron 5 of 6) protein_coding-intron (ENSMUSG00000030555.16, intron 10 of 11) -34720 ENSMUSG00000109115.1 ENSMUSG00000109115 ENSMUST00000207774 Gm44669 TEC Interval_112768 chr4 44780476 44780742 + 0 NA intron (ENSMUSG00000035649.17, intron 3 of 6) protein_coding-intron (ENSMUSG00000035649.17, intron 2 of 5) 24732 ENSMUSG00000035649.17 ENSMUSG00000035649 ENSMUST00000126968 Zcchc7 protein_coding Interval_105942 chr3 90211968 90212203 + 0 NA TTS (ENSMUSG00000027939.11) protein_coding-TTS (ENSMUSG00000027939.11) 1538 ENSMUSG00000090733.6 ENSMUSG00000090733 ENSMUST00000196196 Rps27 protein_coding Interval_121688 chr5 5313927 5314955 + 0 NA intron (ENSMUSG00000028926.15, intron 2 of 2) protein_coding-intron (ENSMUSG00000028926.15, intron 2 of 14) -2818 ENSMUSG00000104867.1 ENSMUSG00000104867 ENSMUST00000198817 Gm43728 sense_intronic Interval_73202 chr17 35547431 35550339 + 0 NA Intergenic Intergenic -3243 ENSMUSG00000039518.7 ENSMUSG00000039518 ENSMUST00000044804 Cdsn protein_coding Interval_66670 chr16 35998916 35999155 + 0 NA intron (ENSMUSG00000022905.12, intron 1 of 4) protein_coding-intron (ENSMUSG00000022905.12, intron 1 of 13) -1218 ENSMUSG00000022905.12 ENSMUSG00000022905 ENSMUST00000173469 Kpna1 protein_coding Interval_16070 chr10 60522711 60522974 + 0 NA intron (ENSMUSG00000012819.15, intron 8 of 65) protein_coding-intron (ENSMUSG00000012819.15, intron 8 of 66) 122938 ENSMUSG00000090439.3 ENSMUSG00000090439 ENSMUST00000218360 Gm17455 protein_coding Interval_3179 chr1 54513680 54514052 + 0 NA intron (ENSMUSG00000073678.4, intron 14 of 26) protein_coding-intron (ENSMUSG00000073678.4, intron 14 of 26) 6404 ENSMUSG00000104136.1 ENSMUSG00000104136 ENSMUST00000194316 Gm36955 TEC Interval_20889 chr10 121754421 121754634 + 0 NA Intergenic Intergenic 3647 ENSMUSG00000053684.8 ENSMUSG00000053684 ENSMUST00000138630 BC048403 protein_coding Interval_1059 chr1 14682938 14683114 + 0 NA Intergenic Intergenic -69911 ENSMUSG00000054493.2 ENSMUSG00000054493 ENSMUST00000067599 Gm9947 antisense Interval_54314 chr14 67584665 67584920 + 0 NA Intergenic Intergenic 4000 ENSMUSG00000114514.1 ENSMUSG00000114514 ENSMUST00000224499 Gm47010 processed_pseudogene Interval_12934 chr10 8287134 8287326 + 0 NA intron (ENSMUSG00000047712.8, intron 2 of 6) protein_coding-intron (ENSMUSG00000047712.8, intron 5 of 7) 15012 ENSMUSG00000047712.8 ENSMUSG00000047712 ENSMUST00000061601 Ust protein_coding Interval_56396 chr14 118436780 118438113 + 0 NA Intergenic Intergenic -61252 ENSMUSG00000115515.1 ENSMUSG00000115515 ENSMUST00000226188 Gm5672 processed_pseudogene Interval_144020 chr7 19012065 19012674 + 0 NA TTS (ENSMUSG00000040891.6) protein_coding-TTS (ENSMUSG00000040891.6) 8325 ENSMUSG00000044030.4 ENSMUSG00000044030 ENSMUST00000053713 Irf2bp1 protein_coding Interval_122997 chr5 28275672 28276122 + 0 NA Intergenic Intergenic -30091 ENSMUSG00000044681.19 ENSMUSG00000044681 ENSMUST00000141196 Cnpy1 protein_coding Interval_12176 chr1 190546632 190546857 + 0 NA Intergenic Intergenic -47582 ENSMUSG00000103963.1 ENSMUSG00000103963 ENSMUST00000191893 Gm30932 lincRNA Interval_17248 chr10 75274414 75274690 + 0 NA intron (ENSMUSG00000033444.14, intron 11 of 15) protein_coding-intron (ENSMUSG00000033444.14, intron 11 of 15) 8483 ENSMUSG00000112116.1 ENSMUSG00000112116 ENSMUST00000218702 Gm46234 processed_pseudogene Interval_69848 chr16 97511995 97512797 + 0 NA intron (ENSMUSG00000022938.8, intron 2 of 8) protein_coding-intron (ENSMUSG00000022938.8, intron 1 of 7) 2377 ENSMUSG00000022938.8 ENSMUSG00000022938 ENSMUST00000232018 Fam3b protein_coding Interval_91194 chr2 35831682 35831954 + 0 NA intron (ENSMUSG00000026885.13, intron 6 of 9) protein_coding-intron (ENSMUSG00000026885.13, intron 6 of 9) -12377 ENSMUSG00000106994.1 ENSMUSG00000106994 ENSMUST00000202084 Gm10829 TEC Interval_171131 chr9 114688141 114689478 + 0 NA promoter-TSS (ENSMUSG00000032435.9) protein_coding-promoter-TSS (ENSMUSG00000032435.9) 19 ENSMUSG00000032435.9 ENSMUSG00000032435 ENSMUST00000047404 Dync1li1 protein_coding Interval_22481 chr11 10933781 10934056 + 0 NA Intergenic Intergenic -182567 ENSMUSG00000050830.17 ENSMUSG00000050830 ENSMUST00000154155 Vwc2 protein_coding Interval_153203 chr7 142375624 142376052 + 0 NA TTS (ENSMUSG00000007891.16) protein_coding-TTS (ENSMUSG00000007891.16) -3569 ENSMUSG00000045777.14 ENSMUSG00000045777 ENSMUST00000123543 Ifitm10 protein_coding Interval_79446 chr18 31930845 31931860 + 0 NA promoter-TSS (ENSMUSG00000024395.9) protein_coding-promoter-TSS (ENSMUSG00000024395.9) -5924 ENSMUSG00000024395.9 ENSMUSG00000024395 ENSMUST00000224328 Lims2 protein_coding Interval_10129 chr1 165972091 165972796 + 0 NA intron (ENSMUSG00000026565.18, intron 1 of 6) protein_coding-intron (ENSMUSG00000026565.18, intron 1 of 14) -30517 ENSMUSG00000097196.2 ENSMUSG00000097196 ENSMUST00000181378 Gm26665 lincRNA Interval_125579 chr5 72172774 72173119 + 0 NA promoter-TSS (ENSMUSG00000105016.1) processed_pseudogene-promoter-TSS (ENSMUSG00000105016.1) -658 ENSMUSG00000105016.1 ENSMUSG00000105016 ENSMUST00000200539 Gm42569 processed_pseudogene Interval_37266 chr12 63835030 63835375 + 0 NA Intergenic Intergenic -92752 ENSMUSG00000113684.1 ENSMUSG00000113684 ENSMUST00000222419 Gm48418 processed_pseudogene Interval_91662 chr2 46198336 46198802 + 0 NA Intergenic Intergenic -107767 ENSMUSG00000088868.1 ENSMUSG00000088868 ENSMUST00000158243 Gm23072 snoRNA Interval_110728 chr4 7364146 7364851 + 0 NA Intergenic Intergenic -196190 ENSMUSG00000086070.1 ENSMUSG00000086070 ENSMUST00000129988 8430436N08Rik lincRNA Interval_2392 chr1 38934781 38935155 + 0 NA Intergenic Intergenic -4235 ENSMUSG00000067604.8 ENSMUSG00000067604 ENSMUST00000160214 Nms protein_coding Interval_130333 chr5 125910605 125910988 + 0 NA Intergenic Intergenic -17974 ENSMUSG00000105274.1 ENSMUSG00000105274 ENSMUST00000199057 1700048F04Rik lincRNA Interval_105324 chr3 84938977 84939215 + 0 NA intron (ENSMUSG00000028086.15, intron 1 of 10) protein_coding-intron (ENSMUSG00000028086.15, intron 1 of 10) 65205 ENSMUSG00000102919.1 ENSMUSG00000102919 ENSMUST00000193246 Gm37726 TEC Interval_84830 chr19 17248521 17248807 + 0 NA intron (ENSMUSG00000118367.1, intron 3 of 3) lincRNA-intron (ENSMUSG00000118367.1, intron 3 of 3) 7824 ENSMUSG00000118367.1 ENSMUSG00000118367 ENSMUST00000235384 Gm50277 lincRNA Interval_27 GL456211.1 146945 148736 + 0 NA NA NA NA NA Interval_150528 chr7 112045687 112046019 + 0 NA intron (ENSMUSG00000059263.9, intron 1 of 28) protein_coding-intron (ENSMUSG00000059263.9, intron 1 of 27) 22347 ENSMUSG00000059263.9 ENSMUSG00000059263 ENSMUST00000210526 Usp47 protein_coding Interval_34478 chr12 4541358 4542639 + 0 NA Intergenic Intergenic 17885 ENSMUSG00000112422.1 ENSMUSG00000112422 ENSMUST00000218081 Gm31938 lincRNA Interval_6467 chr1 110769105 110769735 + 0 NA Intergenic Intergenic 169399 ENSMUSG00000099926.1 ENSMUSG00000099926 ENSMUST00000189583 Gm6693 processed_pseudogene Interval_79199 chr18 25606094 25606308 + 0 NA intron (ENSMUSG00000024268.16, intron 2 of 5) protein_coding-intron (ENSMUSG00000024268.16, intron 2 of 12) -7747 ENSMUSG00000084537.1 ENSMUSG00000084537 ENSMUST00000122588 Gm25845 misc_RNA Interval_76059 chr17 74636811 74638245 + 0 NA intron (ENSMUSG00000024073.16, intron 1 of 2) protein_coding-intron (ENSMUSG00000024073.16, intron 43 of 72) 1806 ENSMUSG00000024073.16 ENSMUSG00000024073 ENSMUST00000182157 Birc6 protein_coding Interval_25496 chr11 49243426 49244808 + 0 NA promoter-TSS (ENSMUSG00000020346.16) protein_coding-promoter-TSS (ENSMUSG00000020346.16) -74 ENSMUSG00000020346.16 ENSMUSG00000020346 ENSMUST00000135314 Mgat1 protein_coding Interval_156502 chr8 48766936 48767375 + 0 NA intron (ENSMUSG00000031561.16, intron 1 of 2) protein_coding-intron (ENSMUSG00000031561.16, intron 1 of 2) -76567 ENSMUSG00000100706.6 ENSMUSG00000100706 ENSMUST00000188936 Gm19744 processed_transcript Interval_30201 chr11 90521059 90521356 + 0 NA intron (ENSMUSG00000020546.14, intron 16 of 17) protein_coding-intron (ENSMUSG00000020546.14, intron 4 of 4) -3891 ENSMUSG00000083268.1 ENSMUSG00000083268 ENSMUST00000118146 Gm11511 processed_pseudogene Interval_138349 chr6 87487756 87488598 + 0 NA intron (ENSMUSG00000030047.14, intron 4 of 10) protein_coding-intron (ENSMUSG00000030047.14, intron 3 of 9) -24530 ENSMUSG00000030047.14 ENSMUSG00000030047 ENSMUST00000203559 Arhgap25 protein_coding Interval_161452 chr8 120530750 120531569 + 0 NA intron (ENSMUSG00000031822.20, intron 1 of 15) protein_coding-intron (ENSMUSG00000031822.20, intron 1 of 15) 6567 ENSMUSG00000102737.1 ENSMUSG00000102737 ENSMUST00000192004 1700016A09Rik TEC Interval_88357 chr2 4400672 4402515 + 0 NA exon (ENSMUSG00000026657.17, exon 1 of 24) protein_coding-exon (ENSMUSG00000026657.17, exon 1 of 24) -20526 ENSMUSG00000075826.1 ENSMUSG00000075826 ENSMUST00000101878 Gm23691 snRNA Interval_155524 chr8 34097300 34097737 + 0 NA exon (ENSMUSG00000031516.11, exon 1 of 4) protein_coding-exon (ENSMUSG00000031516.11, exon 1 of 4) -2480 ENSMUSG00000031516.11 ENSMUSG00000031516 ENSMUST00000143411 Dctn6 protein_coding Interval_139502 chr6 100600936 100601404 + 0 NA intron (ENSMUSG00000035378.17, intron 10 of 10) protein_coding-intron (ENSMUSG00000035378.17, intron 7 of 7) -3513 ENSMUSG00000079224.5 ENSMUSG00000079224 ENSMUST00000121217 Gm6565 processed_pseudogene Interval_140557 chr6 119499415 119499879 + 0 NA intron (ENSMUSG00000030170.14, intron 1 of 4) protein_coding-intron (ENSMUSG00000030170.14, intron 1 of 4) 19979 ENSMUSG00000030019.6 ENSMUSG00000030019 ENSMUST00000032094 Fbxl14 protein_coding Interval_39420 chr12 87312255 87313617 + 0 NA intron (ENSMUSG00000021036.10, intron 2 of 3) protein_coding-intron (ENSMUSG00000021036.10, intron 10 of 11) 15677 ENSMUSG00000021036.10 ENSMUSG00000021036 ENSMUST00000167911 Sptlc2 protein_coding Interval_93965 chr2 80266064 80267270 + 0 NA Intergenic Intergenic -25805 ENSMUSG00000050114.7 ENSMUSG00000050114 ENSMUST00000057072 Prdx6b protein_coding Interval_43259 chr13 27829831 27830968 + 0 NA Intergenic Intergenic -18943 ENSMUSG00000062551.13 ENSMUSG00000062551 ENSMUST00000054932 Prl2c1 protein_coding Interval_169856 chr9 102527337 102529445 + 0 NA TTS (ENSMUSG00000035606.8) protein_coding-TTS (ENSMUSG00000035606.8) 7055 ENSMUSG00000035606.8 ENSMUSG00000035606 ENSMUST00000190609 Ky protein_coding Interval_82069 chr18 67497205 67498581 + 0 NA promoter-TSS (ENSMUSG00000024533.17) protein_coding-promoter-TSS (ENSMUSG00000024533.17) -164 ENSMUSG00000024533.17 ENSMUSG00000024533 ENSMUST00000226000 Spire1 protein_coding Interval_11737 chr1 185029267 185029547 + 0 NA Intergenic Intergenic -29932 ENSMUSG00000026620.11 ENSMUSG00000026620 ENSMUST00000192657 Mark1 protein_coding Interval_174649 chrX 162052598 162053177 + 0 NA intron (ENSMUSG00000059493.13, intron 1 of 8) protein_coding-intron (ENSMUSG00000059493.13, intron 1 of 7) -16570 ENSMUSG00000065828.1 ENSMUSG00000065828 ENSMUST00000083894 Gm26317 snRNA Interval_122019 chr5 14024975 14026095 + 0 NA exon (ENSMUSG00000063531.7, exon 1 of 17) protein_coding-exon (ENSMUSG00000063531.7, exon 1 of 17) -2359 ENSMUSG00000105528.1 ENSMUSG00000105528 ENSMUST00000197239 Gm43519 TEC Interval_16306 chr10 62095169 62095619 + 0 NA Intergenic Intergenic 24271 ENSMUSG00000046687.6 ENSMUSG00000046687 ENSMUST00000053865 Gm5424 processed_pseudogene Interval_133158 chr5 150249008 150249285 + 0 NA intron (ENSMUSG00000056602.12, intron 1 of 3) protein_coding-intron (ENSMUSG00000056602.12, intron 2 of 4) 5283 ENSMUSG00000107082.1 ENSMUSG00000107082 ENSMUST00000201709 Gm36378 processed_pseudogene Interval_72475 chr17 30047002 30047183 + 0 NA intron (ENSMUSG00000044477.12, intron 1 of 4) protein_coding-intron (ENSMUSG00000044477.12, intron 1 of 4) -42401 ENSMUSG00000117371.1 ENSMUSG00000117371 ENSMUST00000233996 Gm50019 bidirectional_promoter_lncRNA Interval_132391 chr5 144664949 144665188 + 0 NA Intergenic Intergenic 58729 ENSMUSG00000082524.3 ENSMUSG00000082524 ENSMUST00000121256 Gm6272 processed_pseudogene Interval_70713 chr17 13768804 13769500 + 0 NA intron (ENSMUSG00000068036.16, intron 1 of 18) protein_coding-intron (ENSMUSG00000068036.16, intron 1 of 18) -7774 ENSMUSG00000117063.1 ENSMUSG00000117063 ENSMUST00000135850 Gm49936 lincRNA Interval_37727 chr12 71450379 71451324 + 0 NA intron (ENSMUSG00000113441.1, intron 5 of 5) lincRNA-intron (ENSMUSG00000113441.1, intron 5 of 5) -37434 ENSMUSG00000113630.1 ENSMUSG00000113630 ENSMUST00000220948 4930404H11Rik lincRNA Interval_128011 chr5 110268609 110270093 + 0 NA intron (ENSMUSG00000029500.16, intron 2 of 5) protein_coding-intron (ENSMUSG00000029500.16, intron 1 of 5) 503 ENSMUSG00000029500.16 ENSMUSG00000029500 ENSMUST00000196381 Pgam5 protein_coding Interval_31513 chr11 101110565 101110908 + 0 NA intron (ENSMUSG00000017802.14, intron 1 of 7) protein_coding-intron (ENSMUSG00000017802.14, intron 1 of 8) 9157 ENSMUSG00000017802.14 ENSMUSG00000017802 ENSMUST00000147201 Retreg3 protein_coding Interval_75221 chr17 64873154 64874259 + 0 NA Intergenic Intergenic -2495 ENSMUSG00000117203.1 ENSMUSG00000117203 ENSMUST00000233516 Gm4701 processed_pseudogene Interval_28026 chr11 72336700 72337049 + 0 NA Intergenic Intergenic -3496 ENSMUSG00000088747.1 ENSMUSG00000088747 ENSMUST00000158122 Gm23224 misc_RNA Interval_22028 chr11 5861557 5863009 + 0 NA exon (ENSMUSG00000020473.13, exon 1 of 21) protein_coding-exon (ENSMUSG00000020473.13, exon 1 of 21) -6865 ENSMUSG00000020473.13 ENSMUSG00000020473 ENSMUST00000138103 Aebp1 protein_coding Interval_41159 chr12 111553198 111553904 + 0 NA Intergenic Intergenic 5459 ENSMUSG00000113462.1 ENSMUSG00000113462 ENSMUST00000220847 Gm48248 processed_pseudogene Interval_136936 chr6 64734232 64735433 + 0 NA Intergenic Intergenic 5707 ENSMUSG00000073043.5 ENSMUSG00000073043 ENSMUST00000101351 Atoh1 protein_coding Interval_10634 chr1 172357486 172358054 + 0 NA intron (ENSMUSG00000044708.5, intron 1 of 1) protein_coding-intron (ENSMUSG00000044708.5, intron 1 of 1) 16560 ENSMUSG00000044708.5 ENSMUSG00000044708 ENSMUST00000056136 Kcnj10 protein_coding Interval_5347 chr1 87772332 87773413 + 0 NA intron (ENSMUSG00000026289.15, intron 6 of 17) protein_coding-intron (ENSMUSG00000026289.15, intron 6 of 17) -4066 ENSMUSG00000087968.1 ENSMUSG00000087968 ENSMUST00000157343 Gm25395 scaRNA Interval_129042 chr5 117060985 117061869 + 0 NA Intergenic Intergenic 2615 ENSMUSG00000107327.1 ENSMUSG00000107327 ENSMUST00000201054 Gm7478 processed_pseudogene Interval_80885 chr18 49900284 49900500 + 0 NA intron (ENSMUSG00000037416.13, intron 3 of 10) protein_coding-intron (ENSMUSG00000037416.13, intron 26 of 42) -22321 ENSMUSG00000037416.13 ENSMUSG00000037416 ENSMUST00000181042 Dmxl1 protein_coding Interval_136475 chr6 54827611 54827802 + 0 NA intron (ENSMUSG00000058446.14, intron 1 of 3) protein_coding-intron (ENSMUSG00000058446.14, intron 1 of 4) 10436 ENSMUSG00000058446.14 ENSMUSG00000058446 ENSMUST00000127331 Znrf2 protein_coding Interval_110139 chr3 153662517 153663215 + 0 NA intron (ENSMUSG00000052544.9, intron 1 of 4) protein_coding-intron (ENSMUSG00000052544.9, intron 1 of 2) 41164 ENSMUSG00000089376.1 ENSMUSG00000089376 ENSMUST00000158751 Gm22136 misc_RNA Interval_14325 chr10 30888721 30889128 + 0 NA Intergenic Intergenic 8407 ENSMUSG00000110918.1 ENSMUSG00000110918 ENSMUST00000215584 Gm48862 processed_pseudogene Interval_58077 chr15 27659293 27660127 + 0 NA intron (ENSMUSG00000056069.10, intron 1 of 2) protein_coding-intron (ENSMUSG00000056069.10, intron 5 of 6) 442 ENSMUSG00000056069.10 ENSMUSG00000056069 ENSMUST00000232492 Otulinl protein_coding Interval_109033 chr3 135307162 135308533 + 0 NA intron (ENSMUSG00000037994.14, intron 1 of 9) protein_coding-intron (ENSMUSG00000037994.14, intron 1 of 12) 105 ENSMUSG00000037994.14 ENSMUSG00000037994 ENSMUST00000132405 Slc9b2 protein_coding Interval_356 chr1 4496787 4497836 + 0 NA promoter-TSS (ENSMUSG00000025902.13) protein_coding-promoter-TSS (ENSMUSG00000025902.13) -163 ENSMUSG00000104238.1 ENSMUSG00000104238 ENSMUST00000194935 Gm37587 processed_transcript Interval_83383 chr18 84745163 84746079 + 0 NA intron (ENSMUSG00000118075.1, intron 2 of 2) lincRNA-intron (ENSMUSG00000118075.1, intron 2 of 2) 1554 ENSMUSG00000118075.1 ENSMUSG00000118075 ENSMUST00000236805 Gm38576 lincRNA Interval_162644 chr9 7212115 7212396 + 0 NA Intergenic Intergenic 8770 ENSMUSG00000032002.10 ENSMUSG00000032002 ENSMUST00000216770 Dcun1d5 protein_coding Interval_23435 chr11 22610333 22611636 + 0 NA Intergenic Intergenic -6424 ENSMUSG00000086256.1 ENSMUSG00000086256 ENSMUST00000142151 Gm12052 lincRNA Interval_8499 chr1 140188026 140189274 + 0 NA Intergenic Intergenic -4886 ENSMUSG00000026365.15 ENSMUSG00000026365 ENSMUST00000194688 Cfh protein_coding Interval_16451 chr10 62953342 62953718 + 0 NA intron (ENSMUSG00000036875.15, intron 3 of 20) protein_coding-intron (ENSMUSG00000036875.15, intron 3 of 20) 11088 ENSMUSG00000071253.8 ENSMUSG00000071253 ENSMUST00000152350 Slc25a16 protein_coding Interval_56621 chr14 120896835 120897102 + 0 NA Intergenic Intergenic -18879 ENSMUSG00000030662.10 ENSMUSG00000030662 ENSMUST00000228277 Ipo5 protein_coding Interval_76222 chr17 78074930 78076402 + 0 NA Intergenic Intergenic -33342 ENSMUSG00000117352.1 ENSMUSG00000117352 ENSMUST00000234287 Gm50029 processed_pseudogene Interval_20478 chr10 117838953 117839360 + 0 NA intron (ENSMUSG00000052681.8, intron 1 of 7) protein_coding-intron (ENSMUSG00000052681.8, intron 1 of 7) -20616 ENSMUSG00000052681.8 ENSMUSG00000052681 ENSMUST00000220214 Rap1b protein_coding Interval_74553 chr17 53303894 53304733 + 0 NA promoter-TSS (ENSMUSG00000117089.1) processed_pseudogene-promoter-TSS (ENSMUSG00000117089.1) 94 ENSMUSG00000117089.1 ENSMUSG00000117089 ENSMUST00000233402 Gm49914 processed_pseudogene Interval_4464 chr1 74367976 74368559 + 0 NA TTS (ENSMUSG00000073650.8) protein_coding-TTS (ENSMUSG00000073650.8) 5825 ENSMUSG00000073650.8 ENSMUSG00000073650 ENSMUST00000186688 Catip protein_coding Interval_164064 chr9 31247456 31247653 + 0 NA Intergenic Intergenic -27267 ENSMUSG00000091003.2 ENSMUSG00000091003 ENSMUST00000164658 Gm7244 processed_pseudogene Interval_165040 chr9 44093841 44094576 + 0 NA TTS (ENSMUSG00000032010.15) protein_coding-TTS (ENSMUSG00000032010.15) 1740 ENSMUSG00000032010.15 ENSMUSG00000032010 ENSMUST00000176022 Usp2 protein_coding Interval_102637 chr3 28746059 28746372 + 0 NA intron (ENSMUSG00000091329.2, intron 1 of 2) antisense-intron (ENSMUSG00000091329.2, intron 1 of 2) -3975 ENSMUSG00000091329.2 ENSMUSG00000091329 ENSMUST00000193387 1700112D23Rik antisense Interval_128261 chr5 112122557 112122818 + 0 NA Intergenic Intergenic -33550 ENSMUSG00000104538.1 ENSMUSG00000104538 ENSMUST00000197688 1700016B01Rik lincRNA Interval_52407 chr14 45681351 45682342 + 0 NA Intergenic Intergenic -14506 ENSMUSG00000086124.2 ENSMUSG00000086124 ENSMUST00000138379 A530076I17Rik lincRNA Interval_117226 chr4 120755099 120756543 + 0 NA Intergenic Intergenic -7209 ENSMUSG00000028631.7 ENSMUSG00000028631 ENSMUST00000129478 Kcnq4 protein_coding Interval_134064 chr6 18513684 18515406 + 0 NA intron (ENSMUSG00000000416.16, intron 1 of 22) protein_coding-intron (ENSMUSG00000000416.16, intron 1 of 22) -65205 ENSMUSG00000093271.1 ENSMUSG00000093271 ENSMUST00000175530 Gm26233 miRNA Interval_159381 chr8 94185913 94187827 + 0 NA Intergenic Intergenic 3581 ENSMUSG00000110524.1 ENSMUSG00000110524 ENSMUST00000212456 Gm39228 lincRNA Interval_65712 chr16 25842906 25843187 + 0 NA intron (ENSMUSG00000022510.14, intron 4 of 13) protein_coding-intron (ENSMUSG00000022510.14, intron 2 of 11) -113429 ENSMUSG00000090257.1 ENSMUSG00000090257 ENSMUST00000161614 Gm4524 antisense Interval_95208 chr2 104809712 104810115 + 0 NA intron (ENSMUSG00000074994.6, intron 1 of 12) protein_coding-intron (ENSMUSG00000074994.6, intron 1 of 11) 6847 ENSMUSG00000074994.6 ENSMUSG00000074994 ENSMUST00000238887 Qser1 protein_coding Interval_117560 chr4 124674629 124675275 + 0 NA Intergenic Intergenic -17783 ENSMUSG00000098760.1 ENSMUSG00000098760 ENSMUST00000184062 Gm2164 antisense Interval_141913 chr6 135313916 135314328 + 0 NA exon (ENSMUSG00000107768.1, exon 4 of 4) lincRNA-exon (ENSMUSG00000107768.1, exon 4 of 4) -2411 ENSMUSG00000108179.1 ENSMUSG00000108179 ENSMUST00000203417 Gm44274 TEC Interval_57237 chr15 8051193 8051630 + 0 NA intron (ENSMUSG00000039828.7, intron 5 of 17) protein_coding-intron (ENSMUSG00000039828.7, intron 5 of 17) 47798 ENSMUSG00000039828.7 ENSMUSG00000039828 ENSMUST00000227371 Wdr70 protein_coding Interval_171375 chr9 117162921 117163854 + 0 NA intron (ENSMUSG00000039607.17, intron 1 of 13) protein_coding-intron (ENSMUSG00000039607.17, intron 1 of 12) -89149 ENSMUSG00000079669.2 ENSMUSG00000079669 ENSMUST00000172075 Gm17396 processed_transcript Interval_37551 chr12 69816914 69817875 + 0 NA TTS (ENSMUSG00000034761.15) protein_coding-TTS (ENSMUSG00000034761.15) -2253 ENSMUSG00000113497.1 ENSMUSG00000113497 ENSMUST00000222163 Gm18030 processed_pseudogene Interval_157513 chr8 71072158 71072452 + 0 NA intron (ENSMUSG00000110554.1, intron 5 of 14) lincRNA-intron (ENSMUSG00000101854.2, intron 1 of 4) 13453 ENSMUSG00000101854.2 ENSMUSG00000101854 ENSMUST00000170101 1700026F02Rik lincRNA Interval_25225 chr11 45565743 45565968 + 0 NA Intergenic Intergenic -73528 ENSMUSG00000077320.1 ENSMUSG00000077320 ENSMUST00000104132 Gm22284 snoRNA Interval_129229 chr5 118331227 118332330 + 0 NA Intergenic Intergenic 65329 ENSMUSG00000095477.1 ENSMUSG00000095477 ENSMUST00000104098 Gm25076 snoRNA Interval_170907 chr9 111918348 111918849 + 0 NA promoter-TSS (ENSMUSG00000111054.1) lincRNA-promoter-TSS (ENSMUSG00000111054.1) 68 ENSMUSG00000111054.1 ENSMUSG00000111054 ENSMUST00000215688 4930545L08Rik lincRNA Interval_65754 chr16 27183858 27184686 + 0 NA Intergenic Intergenic -123217 ENSMUSG00000052276.8 ENSMUSG00000052276 ENSMUST00000066852 Ostn protein_coding Interval_25439 chr11 48557019 48557262 + 0 NA Intergenic Intergenic -4616 ENSMUSG00000083954.1 ENSMUSG00000083954 ENSMUST00000118344 Gm12179 processed_pseudogene Interval_12134 chr1 189941863 189942502 + 0 NA Intergenic Intergenic -19929 ENSMUSG00000026603.13 ENSMUSG00000026603 ENSMUST00000144452 Smyd2 protein_coding Interval_27421 chr11 67523909 67524322 + 0 NA intron (ENSMUSG00000033066.16, intron 1 of 6) protein_coding-intron (ENSMUSG00000033066.16, intron 1 of 13) 53351 ENSMUSG00000087058.1 ENSMUSG00000087058 ENSMUST00000152963 Gm12301 antisense Interval_101919 chr3 11374292 11374498 + 0 NA Intergenic Intergenic 220058 ENSMUSG00000095289.1 ENSMUSG00000095289 ENSMUST00000175281 Gm22547 miRNA Interval_39127 chr12 85296141 85296975 + 0 NA exon (ENSMUSG00000045064.5, exon 3 of 3) protein_coding-exon (ENSMUSG00000045064.5, exon 3 of 3) -8120 ENSMUSG00000008822.15 ENSMUSG00000008822 ENSMUST00000065913 Acyp1 protein_coding Interval_22434 chr11 10026981 10028022 + 0 NA Intergenic Intergenic -211836 ENSMUSG00000082312.1 ENSMUSG00000082312 ENSMUST00000117538 Gm11996 processed_pseudogene Interval_85432 chr19 25994276 25994462 + 0 NA Intergenic Intergenic 52098 ENSMUSG00000118016.1 ENSMUSG00000118016 ENSMUST00000237184 1700048O14Rik processed_transcript Interval_74418 chr17 50085746 50088154 + 0 NA intron (ENSMUSG00000039316.14, intron 3 of 6) protein_coding-intron (ENSMUSG00000039316.14, intron 3 of 9) -27069 ENSMUSG00000117117.1 ENSMUSG00000117117 ENSMUST00000233275 Gm49901 lincRNA Interval_52347 chr14 45317937 45319127 + 0 NA promoter-TSS (ENSMUSG00000021831.9) protein_coding-promoter-TSS (ENSMUSG00000021831.9) -15875 ENSMUSG00000021832.8 ENSMUSG00000021832 ENSMUST00000226739 Psmc6 protein_coding Interval_71600 chr17 24773339 24774901 + 0 NA Intergenic Intergenic -5583 ENSMUSG00000117379.1 ENSMUSG00000117379 ENSMUST00000234130 Gm50022 lincRNA Interval_32900 chr11 112908296 112909051 + 0 NA Intergenic Intergenic 83494 ENSMUSG00000020624.3 ENSMUSG00000020624 ENSMUST00000153429 4933434M16Rik lincRNA Interval_92614 chr2 61494101 61494657 + 0 NA Intergenic Intergenic 1613 ENSMUSG00000088340.1 ENSMUSG00000088340 ENSMUST00000157715 Gm22338 snoRNA Interval_10882 chr1 176606263 176607135 + 0 NA Intergenic Intergenic 35859 ENSMUSG00000103471.1 ENSMUSG00000103471 ENSMUST00000193453 Gm17966 processed_pseudogene Interval_73280 chr17 35947274 35948247 + 0 NA intron (ENSMUSG00000092284.1, intron 2 of 5) unprocessed_pseudogene-intron (ENSMUSG00000092284.1, intron 2 of 5) 514 ENSMUSG00000092284.1 ENSMUSG00000092284 ENSMUST00000173255 Gm8801 unprocessed_pseudogene Interval_43003 chr13 22829087 22830406 + 0 NA intron (ENSMUSG00000061296.2, intron 1 of 1) protein_coding-intron (ENSMUSG00000061296.2, intron 1 of 2) 1602 ENSMUSG00000061296.2 ENSMUSG00000061296 ENSMUST00000072044 Vmn1r210 protein_coding Interval_164009 chr9 30848586 30848996 + 0 NA Intergenic Intergenic 60866 ENSMUSG00000033453.8 ENSMUSG00000033453 ENSMUST00000216215 Adamts15 protein_coding Interval_868 chr1 12807058 12808921 + 0 NA exon (ENSMUSG00000016918.15, exon 7 of 22) protein_coding-exon (ENSMUSG00000016918.15, exon 7 of 22) 88525 ENSMUSG00000016918.15 ENSMUSG00000016918 ENSMUST00000185780 Sulf1 protein_coding Interval_37696 chr12 71160401 71160596 + 0 NA intron (ENSMUSG00000034601.17, intron 11 of 29) protein_coding-intron (ENSMUSG00000034601.17, intron 11 of 27) 23650 ENSMUSG00000034601.17 ENSMUSG00000034601 ENSMUST00000134748 2700049A03Rik protein_coding Interval_14326 chr10 30899272 30899546 + 0 NA Intergenic Intergenic 18892 ENSMUSG00000110918.1 ENSMUSG00000110918 ENSMUST00000215584 Gm48862 processed_pseudogene Interval_90485 chr2 30736954 30738182 + 0 NA Intergenic Intergenic 16358 ENSMUSG00000093091.1 ENSMUSG00000093091 ENSMUST00000175350 Mir3089 miRNA Interval_122873 chr5 26621677 26622709 + 0 NA Intergenic Intergenic 22755 ENSMUSG00000105491.1 ENSMUSG00000105491 ENSMUST00000200355 Gm42844 processed_pseudogene Interval_23743 chr11 25713670 25713906 + 0 NA intron (ENSMUSG00000032985.15, intron 2 of 5) protein_coding-intron (ENSMUSG00000032985.15, intron 4 of 6) 28648 ENSMUSG00000064761.1 ENSMUSG00000064761 ENSMUST00000082827 Gm23514 snoRNA Interval_85127 chr19 23055980 23058821 + 0 NA intron (ENSMUSG00000097930.2, intron 5 of 6) lincRNA-intron (ENSMUSG00000097930.2, intron 5 of 6) -4054 ENSMUSG00000118155.1 ENSMUSG00000118155 ENSMUST00000235686 Gm50136 lincRNA Interval_129831 chr5 122635735 122636041 + 0 NA Intergenic Intergenic -14536 ENSMUSG00000029468.17 ENSMUSG00000029468 ENSMUST00000197042 P2rx7 protein_coding Interval_5540 chr1 89673042 89674280 + 0 NA intron (ENSMUSG00000055013.16, intron 9 of 16) protein_coding-intron (ENSMUSG00000055013.16, intron 9 of 17) 10233 ENSMUSG00000102009.6 ENSMUSG00000102009 ENSMUST00000187011 4933400F21Rik processed_transcript Interval_65042 chr16 18653570 18654545 + 0 NA Intergenic Intergenic -27586 ENSMUSG00000072214.7 ENSMUSG00000072214 ENSMUST00000231622 Septin5 protein_coding Interval_60094 chr15 65359992 65360218 + 0 NA Intergenic Intergenic -159543 ENSMUSG00000115066.1 ENSMUSG00000115066 ENSMUST00000227626 Gm49242 processed_pseudogene Interval_83807 chr19 4796693 4796915 + 0 NA intron (ENSMUSG00000096370.8, intron 1 of 2) protein_coding-intron (ENSMUSG00000096370.8, intron 1 of 2) -2924 ENSMUSG00000094936.8 ENSMUSG00000094936 ENSMUST00000179820 Rbm4 protein_coding Interval_51773 chr14 32111316 32113290 + 0 NA Intergenic Intergenic 26518 ENSMUSG00000021906.14 ENSMUSG00000021906 ENSMUST00000164396 Oxnad1 protein_coding Interval_90653 chr2 31700377 31701349 + 0 NA intron (ENSMUSG00000026842.16, intron 2 of 11) protein_coding-intron (ENSMUSG00000026842.16, intron 1 of 10) 11745 ENSMUSG00000118600.1 ENSMUSG00000118600 ENSMUST00000239231 AL929275.1 protein_coding Interval_107057 chr3 103204489 103205284 + 0 NA Intergenic Intergenic -5911 ENSMUSG00000054379.7 ENSMUSG00000054379 ENSMUST00000090704 2410024N13Rik pseudogene Interval_115535 chr4 100366179 100366835 + 0 NA intron (ENSMUSG00000035305.5, intron 4 of 8) protein_coding-intron (ENSMUSG00000035305.5, intron 4 of 8) -4448 ENSMUSG00000080967.1 ENSMUSG00000080967 ENSMUST00000121588 Gm12706 processed_pseudogene Interval_142408 chr6 141704141 141705529 + 0 NA Intergenic Intergenic 10256 ENSMUSG00000088865.1 ENSMUSG00000088865 ENSMUST00000158240 Gm23069 misc_RNA Interval_145130 chr7 30204259 30204774 + 0 NA Intergenic Intergenic 8222 ENSMUSG00000109142.1 ENSMUSG00000109142 ENSMUST00000208540 Gm44600 processed_pseudogene Interval_69752 chr16 96036734 96036978 + 0 NA intron (ENSMUSG00000085884.1, intron 1 of 1) protein_coding-intron (ENSMUSG00000022914.17, intron 22 of 41) 766 ENSMUSG00000085884.1 ENSMUSG00000085884 ENSMUST00000146222 Gm15342 processed_transcript Interval_114817 chr4 85790134 85791322 + 0 NA intron (ENSMUSG00000066113.16, intron 2 of 3) protein_coding-intron (ENSMUSG00000066113.16, intron 2 of 3) -119183 ENSMUSG00000088122.2 ENSMUSG00000088122 ENSMUST00000157497 Gm26069 misc_RNA Interval_28787 chr11 78317796 78317995 + 0 NA promoter-TSS (ENSMUSG00000002055.9) protein_coding-promoter-TSS (ENSMUSG00000002055.9) 2538 ENSMUSG00000002055.9 ENSMUSG00000002055 ENSMUST00000125477 Spag5 protein_coding Interval_160146 chr8 106704784 106705752 + 0 NA exon (ENSMUSG00000041949.6, exon 8 of 8) protein_coding-exon (ENSMUSG00000041949.6, exon 8 of 8) 22153 ENSMUSG00000041949.6 ENSMUSG00000041949 ENSMUST00000211979 Tango6 protein_coding Interval_68510 chr16 78295845 78296076 + 0 NA promoter-TSS (ENSMUSG00000109841.2) processed_transcript-promoter-TSS (ENSMUSG00000109841.2) -973 ENSMUSG00000109841.2 ENSMUSG00000109841 ENSMUST00000210555 E330011O21Rik processed_transcript Interval_57753 chr15 18671334 18671542 + 0 NA Intergenic Intergenic 35732 ENSMUSG00000115254.1 ENSMUSG00000115254 ENSMUST00000228241 Gm49140 processed_pseudogene Interval_106069 chr3 92428343 92428944 + 0 NA exon (ENSMUSG00000042165.8, exon 3 of 3) protein_coding-exon (ENSMUSG00000042165.8, exon 3 of 3) 780 ENSMUSG00000042165.8 ENSMUSG00000042165 ENSMUST00000047300 Gm9774 protein_coding Interval_113515 chr4 55463452 55465591 + 0 NA intron (ENSMUSG00000086346.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000086346.1, intron 1 of 1) 1293 ENSMUSG00000086346.1 ENSMUSG00000086346 ENSMUST00000152190 Gm12510 lincRNA Interval_11344 chr1 181098476 181098997 + 0 NA intron (ENSMUSG00000026516.8, intron 3 of 3) protein_coding-intron (ENSMUSG00000026516.8, intron 20 of 22) -3211 ENSMUSG00000026516.8 ENSMUSG00000026516 ENSMUST00000193758 Nvl protein_coding Interval_64536 chr16 13144480 13144886 + 0 NA TTS (ENSMUSG00000022545.13) protein_coding-TTS (ENSMUSG00000022545.13) 12292 ENSMUSG00000022545.13 ENSMUSG00000022545 ENSMUST00000156393 Ercc4 protein_coding Interval_38086 chr12 75577704 75578185 + 0 NA intron (ENSMUSG00000021051.10, intron 2 of 12) protein_coding-intron (ENSMUSG00000021051.10, intron 2 of 13) -1921 ENSMUSG00000112459.1 ENSMUSG00000112459 ENSMUST00000219909 Gm47689 antisense Interval_40758 chr12 108199545 108200347 + 0 NA intron (ENSMUSG00000021258.10, intron 1 of 1) protein_coding-intron (ENSMUSG00000021258.10, intron 10 of 10) 861 ENSMUSG00000021258.10 ENSMUSG00000021258 ENSMUST00000223363 Ccnk protein_coding Interval_108422 chr3 126997235 126998746 + 0 NA intron (ENSMUSG00000032826.19, intron 22 of 30) protein_coding-intron (ENSMUSG00000032826.19, intron 1 of 24) -7379 ENSMUSG00000077617.1 ENSMUSG00000077617 ENSMUST00000104429 Gm25501 snoRNA Interval_150110 chr7 106691283 106691477 + 0 NA promoter-TSS (ENSMUSG00000064223.4) protein_coding-promoter-TSS (ENSMUSG00000064223.4) -256 ENSMUSG00000064223.4 ENSMUSG00000064223 ENSMUST00000052535 Olfr694 protein_coding Interval_91623 chr2 44902443 44902775 + 0 NA intron (ENSMUSG00000036890.13, intron 1 of 5) protein_coding-intron (ENSMUSG00000036890.13, intron 1 of 4) -40334 ENSMUSG00000036890.13 ENSMUSG00000036890 ENSMUST00000133442 Gtdc1 protein_coding Interval_83809 chr19 4810165 4813199 + 0 NA promoter-TSS (ENSMUSG00000006456.10) protein_coding-promoter-TSS (ENSMUSG00000006456.10) -170 ENSMUSG00000006456.10 ENSMUSG00000006456 ENSMUST00000180008 Rbm14 protein_coding Interval_102474 chr3 27086024 27087133 + 0 NA Intergenic Intergenic -22404 ENSMUSG00000087742.1 ENSMUSG00000087742 ENSMUST00000157117 Gm25152 snoRNA Interval_17214 chr10 75030955 75031585 + 0 NA exon (ENSMUSG00000009070.14, exon 2 of 7) protein_coding-exon (ENSMUSG00000009070.14, exon 2 of 7) 1283 ENSMUSG00000009070.14 ENSMUSG00000009070 ENSMUST00000159761 Rsph14 protein_coding Interval_12458 chr1 193632290 193633027 + 0 NA Intergenic Intergenic -122484 ENSMUSG00000097850.2 ENSMUSG00000097850 ENSMUST00000180420 Mir205hg lincRNA Interval_80352 chr18 39867294 39867599 + 0 NA Intergenic Intergenic 61928 ENSMUSG00000118015.1 ENSMUSG00000118015 ENSMUST00000237624 Gm41708 lincRNA Interval_71593 chr17 24745328 24745985 + 0 NA Intergenic Intergenic -7360 ENSMUSG00000039628.9 ENSMUSG00000039628 ENSMUST00000234202 Hs3st6 protein_coding Interval_43601 chr13 34023829 34024067 + 0 NA intron (ENSMUSG00000021408.15, intron 5 of 8) protein_coding-intron (ENSMUSG00000021408.15, intron 7 of 10) 8704 ENSMUSG00000021408.15 ENSMUSG00000021408 ENSMUST00000222176 Ripk1 protein_coding Interval_132353 chr5 144406059 144406816 + 0 NA promoter-TSS (ENSMUSG00000083574.1) processed_pseudogene-promoter-TSS (ENSMUSG00000083574.1) -165 ENSMUSG00000083574.1 ENSMUSG00000083574 ENSMUST00000118354 Gm15709 processed_pseudogene Interval_20138 chr10 115210973 115213188 + 0 NA intron (ENSMUSG00000020130.9, intron 6 of 11) protein_coding-intron (ENSMUSG00000020130.9, intron 11 of 16) -36522 ENSMUSG00000006764.8 ENSMUSG00000006764 ENSMUST00000155794 Tph2 protein_coding Interval_146969 chr7 56450732 56451069 + 0 NA intron (ENSMUSG00000030450.11, intron 22 of 22) protein_coding-intron (ENSMUSG00000030450.11, intron 23 of 23) -207750 ENSMUSG00000108773.1 ENSMUSG00000108773 ENSMUST00000206278 Gm44506 antisense Interval_78924 chr18 21709313 21709688 + 0 NA Intergenic Intergenic -54782 ENSMUSG00000042514.11 ENSMUSG00000042514 ENSMUST00000122333 Klhl14 protein_coding Interval_56929 chr14 123575622 123576532 + 0 NA intron (ENSMUSG00000000197.8, intron 6 of 29) protein_coding-intron (ENSMUSG00000000197.8, intron 6 of 43) 51067 ENSMUSG00000000197.8 ENSMUSG00000000197 ENSMUST00000228766 Nalcn protein_coding Interval_126659 chr5 91861121 91862205 + 0 NA Intergenic Intergenic 51740 ENSMUSG00000107301.1 ENSMUSG00000107301 ENSMUST00000202249 Gm43688 lincRNA Interval_139399 chr6 99844769 99845614 + 0 NA Intergenic Intergenic -4877 ENSMUSG00000107713.1 ENSMUSG00000107713 ENSMUST00000205215 Gm6681 processed_pseudogene Interval_104330 chr3 63505079 63505538 + 0 NA Intergenic Intergenic 16315 ENSMUSG00000088957.1 ENSMUSG00000088957 ENSMUST00000158332 Gm24946 snRNA Interval_79449 chr18 31943355 31944640 + 0 NA exon (ENSMUSG00000052229.5, exon 2 of 2) protein_coding-exon (ENSMUSG00000052229.5, exon 2 of 2) 5639 ENSMUSG00000052229.5 ENSMUSG00000052229 ENSMUST00000064016 Gpr17 protein_coding Interval_112286 chr4 40020810 40021185 + 0 NA Intergenic Intergenic -39439 ENSMUSG00000088526.1 ENSMUSG00000088526 ENSMUST00000157901 Gm26087 snRNA Interval_76163 chr17 75806033 75806717 + 0 NA Intergenic Intergenic -27462 ENSMUSG00000117587.1 ENSMUSG00000117587 ENSMUST00000235034 Gm50099 processed_pseudogene Interval_100101 chr2 167078263 167079920 + 0 NA Intergenic Intergenic 8648 ENSMUSG00000081946.1 ENSMUSG00000081946 ENSMUST00000121305 Gm11472 processed_pseudogene Interval_87046 chr19 45782545 45784342 + 0 NA exon (ENSMUSG00000025220.8, exon 1 of 16) protein_coding-exon (ENSMUSG00000025220.8, exon 1 of 16) -11557 ENSMUSG00000025220.8 ENSMUSG00000025220 ENSMUST00000235448 Oga protein_coding Interval_105601 chr3 88022471 88023716 + 0 NA TTS (ENSMUSG00000004894.10) protein_coding-TTS (ENSMUSG00000004894.10) 580 ENSMUSG00000004894.10 ENSMUSG00000004894 ENSMUST00000160150 Hapln2 protein_coding Interval_136161 chr6 51586004 51586751 + 0 NA intron (ENSMUSG00000038301.15, intron 5 of 6) protein_coding-intron (ENSMUSG00000038301.15, intron 5 of 6) -35255 ENSMUSG00000094528.1 ENSMUSG00000094528 ENSMUST00000175195 Gm22914 miRNA Interval_42357 chr13 12316874 12317430 + 0 NA intron (ENSMUSG00000052374.16, intron 2 of 21) protein_coding-intron (ENSMUSG00000052374.16, intron 1 of 20) -43056 ENSMUSG00000052374.16 ENSMUSG00000052374 ENSMUST00000110616 Actn2 protein_coding Interval_89311 chr2 19234093 19234259 + 0 NA intron (ENSMUSG00000037683.14, intron 2 of 19) protein_coding-intron (ENSMUSG00000037683.14, intron 2 of 18) 34874 ENSMUSG00000037683.14 ENSMUSG00000037683 ENSMUST00000049255 Armc3 protein_coding Interval_167481 chr9 69790569 69790807 + 0 NA intron (ENSMUSG00000097623.7, intron 1 of 4) antisense-intron (ENSMUSG00000097623.7, intron 1 of 5) 2463 ENSMUSG00000111286.1 ENSMUSG00000111286 ENSMUST00000216018 Gm18745 processed_pseudogene Interval_125753 chr5 73902968 73904405 + 0 NA Intergenic Intergenic -9210 ENSMUSG00000107027.1 ENSMUSG00000107027 ENSMUST00000202487 1700019F05Rik lincRNA Interval_60147 chr15 66422217 66423138 + 0 NA intron (ENSMUSG00000022375.6, intron 10 of 11) protein_coding-intron (ENSMUSG00000022375.6, intron 10 of 11) -64193 ENSMUSG00000115351.1 ENSMUSG00000115351 ENSMUST00000227329 Gm19077 processed_pseudogene Interval_165788 chr9 53060913 53061258 + 0 NA Intergenic Intergenic -103103 ENSMUSG00000111693.1 ENSMUSG00000111693 ENSMUST00000213563 Gm47986 processed_pseudogene Interval_99409 chr2 160736559 160737106 + 0 NA intron (ENSMUSG00000016933.17, intron 1 of 1) protein_coding-intron (ENSMUSG00000016933.17, intron 2 of 33) 5133 ENSMUSG00000016933.17 ENSMUSG00000016933 ENSMUST00000143997 Plcg1 protein_coding Interval_93472 chr2 73338347 73338601 + 0 NA TTS (ENSMUSG00000008226.14) protein_coding-TTS (ENSMUSG00000008226.14) -18794 ENSMUSG00000085519.1 ENSMUSG00000085519 ENSMUST00000150705 Gm13703 antisense Interval_85723 chr19 30045995 30046324 + 0 NA intron (ENSMUSG00000024817.13, intron 2 of 8) protein_coding-intron (ENSMUSG00000024817.13, intron 2 of 15) -32345 ENSMUSG00000024817.13 ENSMUSG00000024817 ENSMUST00000143769 Uhrf2 protein_coding Interval_150316 chr7 109561994 109562813 + 0 NA intron (ENSMUSG00000031024.13, intron 1 of 1) protein_coding-intron (ENSMUSG00000031024.13, intron 2 of 19) 41123 ENSMUSG00000077575.1 ENSMUSG00000077575 ENSMUST00000104387 Gm24888 snoRNA Interval_168437 chr9 80333868 80334195 + 0 NA intron (ENSMUSG00000032343.15, intron 14 of 16) protein_coding-intron (ENSMUSG00000032343.15, intron 13 of 15) -68581 ENSMUSG00000099016.1 ENSMUSG00000099016 ENSMUST00000183413 Gm27227 antisense Interval_166560 chr9 60901293 60901550 + 0 NA Intergenic Intergenic -17802 ENSMUSG00000111444.1 ENSMUSG00000111444 ENSMUST00000216374 Gm47923 lincRNA Interval_89775 chr2 25371511 25373178 + 0 NA promoter-TSS (ENSMUSG00000026955.13) protein_coding-promoter-TSS (ENSMUSG00000026955.13) -16 ENSMUSG00000026955.13 ENSMUSG00000026955 ENSMUST00000129214 Sapcd2 protein_coding Interval_82134 chr18 67939015 67939373 + 0 NA intron (ENSMUSG00000024544.9, intron 1 of 5) protein_coding-intron (ENSMUSG00000024544.9, intron 1 of 5) 31566 ENSMUSG00000118326.1 ENSMUSG00000118326 ENSMUST00000235570 Gm8887 processed_pseudogene Interval_45696 chr13 57030818 57031049 + 0 NA Intergenic Intergenic -99985 ENSMUSG00000077279.1 ENSMUSG00000077279 ENSMUST00000104091 Gm22777 snoRNA Interval_117995 chr4 127612935 127613124 + 0 NA Intergenic Intergenic 138127 ENSMUSG00000087470.2 ENSMUSG00000087470 ENSMUST00000146587 A630031M04Rik lincRNA Interval_137414 chr6 72036671 72036882 + 0 NA intron (ENSMUSG00000108356.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000108356.1, intron 1 of 2) 5752 ENSMUSG00000108356.1 ENSMUSG00000108356 ENSMUST00000206867 9130221F21Rik lincRNA Interval_131625 chr5 138899796 138900669 + 0 NA Intergenic Intergenic 80152 ENSMUSG00000094504.3 ENSMUSG00000094504 ENSMUST00000179205 Gm5294 protein_coding Interval_52468 chr14 46760140 46761028 + 0 NA promoter-TSS (ENSMUSG00000037628.10) protein_coding-promoter-TSS (ENSMUSG00000037628.10) -2 ENSMUSG00000037628.10 ENSMUSG00000037628 ENSMUST00000226621 Cdkn3 protein_coding Interval_75793 chr17 71418340 71420554 + 0 NA intron (ENSMUSG00000024054.14, intron 17 of 47) protein_coding-intron (ENSMUSG00000024054.14, intron 17 of 47) -2100 ENSMUSG00000117103.1 ENSMUSG00000117103 ENSMUST00000232892 Gm49916 processed_pseudogene Interval_20848 chr10 121500120 121500463 + 0 NA Intergenic Intergenic -5060 ENSMUSG00000111926.1 ENSMUSG00000111926 ENSMUST00000219800 Gm46204 lincRNA Interval_19614 chr10 105790238 105792210 + 0 NA intron (ENSMUSG00000036009.16, intron 9 of 12) protein_coding-intron (ENSMUSG00000036009.16, intron 8 of 11) 12973 ENSMUSG00000084545.1 ENSMUSG00000084545 ENSMUST00000122596 n-R5s80 rRNA Interval_69598 chr16 94536540 94538007 + 0 NA Intergenic Intergenic -32886 ENSMUSG00000022898.13 ENSMUSG00000022898 ENSMUST00000142988 Vps26c protein_coding Interval_124685 chr5 53258060 53259438 + 0 NA Intergenic Intergenic -8441 ENSMUSG00000061461.11 ENSMUSG00000061461 ENSMUST00000204089 Smim20 protein_coding Interval_66365 chr16 33426589 33427069 + 0 NA intron (ENSMUSG00000022811.17, intron 2 of 7) protein_coding-intron (ENSMUSG00000022811.17, intron 2 of 8) 45966 ENSMUSG00000022811.17 ENSMUSG00000022811 ENSMUST00000089677 Zfp148 protein_coding Interval_48579 chr13 100444666 100445636 + 0 NA intron (ENSMUSG00000021640.6, intron 2 of 15) protein_coding-intron (ENSMUSG00000021640.6, intron 1 of 14) 7713 ENSMUSG00000021640.6 ENSMUSG00000021640 ENSMUST00000221727 Naip1 protein_coding Interval_108811 chr3 131714073 131714325 + 0 NA Intergenic Intergenic -45606 ENSMUSG00000105331.1 ENSMUSG00000105331 ENSMUST00000197726 Gm29865 lincRNA Interval_113777 chr4 58533695 58535310 + 0 NA intron (ENSMUSG00000038668.14, intron 1 of 3) protein_coding-intron (ENSMUSG00000038668.14, intron 1 of 3) 13899 ENSMUSG00000038668.14 ENSMUSG00000038668 ENSMUST00000145361 Lpar1 protein_coding Interval_44073 chr13 40728204 40729089 + 0 NA exon (ENSMUSG00000021359.16, exon 2 of 7) protein_coding-exon (ENSMUSG00000021359.16, exon 2 of 7) 298 ENSMUSG00000021359.16 ENSMUSG00000021359 ENSMUST00000224700 Tfap2a protein_coding Interval_93133 chr2 70474440 70477728 + 0 NA exon (ENSMUSG00000075304.2, exon 2 of 2) protein_coding-exon (ENSMUSG00000075304.2, exon 2 of 2) 1161 ENSMUSG00000075304.2 ENSMUSG00000075304 ENSMUST00000100043 Sp5 protein_coding Interval_3602 chr1 59925940 59927010 + 0 NA intron (ENSMUSG00000041040.12, intron 1 of 7) protein_coding-intron (ENSMUSG00000041040.12, intron 1 of 7) -3213 ENSMUSG00000103696.1 ENSMUSG00000103696 ENSMUST00000191628 Gm37531 TEC Interval_42386 chr13 12526030 12526483 + 0 NA Intergenic Intergenic -5818 ENSMUSG00000095105.2 ENSMUSG00000095105 ENSMUST00000179308 Edaradd protein_coding Interval_48087 chr13 95909750 95910596 + 0 NA Intergenic Intergenic -13053 ENSMUSG00000065866.1 ENSMUSG00000065866 ENSMUST00000083932 Gm24032 snRNA Interval_122763 chr5 25213125 25213352 + 0 NA intron (ENSMUSG00000028938.9, intron 7 of 8) protein_coding-intron (ENSMUSG00000028938.9, intron 7 of 8) -8666 ENSMUSG00000038072.14 ENSMUSG00000038072 ENSMUST00000114950 Galnt11 protein_coding Interval_143578 chr7 12943195 12944160 + 0 NA Intergenic Intergenic 6389 ENSMUSG00000097115.2 ENSMUSG00000097115 ENSMUST00000191346 1810019N24Rik lincRNA Interval_88523 chr2 5817545 5817902 + 0 NA intron (ENSMUSG00000039128.13, intron 6 of 6) protein_coding-intron (ENSMUSG00000039128.13, intron 6 of 12) 5396 ENSMUSG00000039128.13 ENSMUSG00000039128 ENSMUST00000150876 Cdc123 protein_coding Interval_92307 chr2 58566065 58567902 + 0 NA promoter-TSS (ENSMUSG00000026839.17) protein_coding-promoter-TSS (ENSMUSG00000026839.17) -50711 ENSMUSG00000026836.15 ENSMUSG00000026836 ENSMUST00000126407 Acvr1 protein_coding Interval_20482 chr10 117860273 117862351 + 0 NA Intergenic Intergenic -3358 ENSMUSG00000112458.1 ENSMUSG00000112458 ENSMUST00000218113 Gm40773 lincRNA Interval_138052 chr6 84721652 84721979 + 0 NA intron (ENSMUSG00000033769.16, intron 20 of 21) protein_coding-intron (ENSMUSG00000033769.16, intron 20 of 21) -90425 ENSMUSG00000098142.1 ENSMUSG00000098142 ENSMUST00000183053 Gm7507 processed_pseudogene Interval_86948 chr19 45150174 45151892 + 0 NA promoter-TSS (ENSMUSG00000025215.10) protein_coding-promoter-TSS (ENSMUSG00000025215.10) -436 ENSMUSG00000025215.10 ENSMUSG00000025215 ENSMUST00000174617 Tlx1 protein_coding Interval_23513 chr11 23053135 23053408 + 0 NA Intergenic Intergenic 9961 ENSMUSG00000088010.1 ENSMUSG00000088010 ENSMUST00000157385 Gm23740 rRNA Interval_108298 chr3 123431969 123432417 + 0 NA Intergenic Intergenic -14720 ENSMUSG00000027978.9 ENSMUSG00000027978 ENSMUST00000029603 Prss12 protein_coding Interval_82544 chr18 75036634 75037166 + 0 NA intron (ENSMUSG00000035765.10, intron 1 of 8) protein_coding-intron (ENSMUSG00000035765.10, intron 1 of 16) 13044 ENSMUSG00000098305.1 ENSMUSG00000098305 ENSMUST00000185185 Gm27781 rRNA Interval_1416 chr1 21716921 21717571 + 0 NA intron (ENSMUSG00000028033.16, intron 1 of 11) protein_coding-intron (ENSMUSG00000028033.16, intron 1 of 13) 123268 ENSMUSG00000103748.1 ENSMUSG00000103748 ENSMUST00000194737 Gm38243 TEC Interval_88574 chr2 6316801 6316996 + 0 NA intron (ENSMUSG00000087125.1, intron 6 of 6) antisense-intron (ENSMUSG00000087125.1, intron 6 of 6) 6182 ENSMUSG00000118578.1 ENSMUSG00000118578 ENSMUST00000238876 AL845275.1 protein_coding Interval_16358 chr10 62449169 62450558 + 0 NA promoter-TSS (ENSMUSG00000020079.15) protein_coding-promoter-TSS (ENSMUSG00000020079.15) -180 ENSMUSG00000020079.15 ENSMUSG00000020079 ENSMUST00000161941 Supv3l1 protein_coding Interval_75210 chr17 64734176 64734401 + 0 NA intron (ENSMUSG00000024085.13, intron 4 of 6) protein_coding-intron (ENSMUSG00000024085.13, intron 18 of 21) 19808 ENSMUSG00000091160.1 ENSMUSG00000091160 ENSMUST00000170636 Gm17133 antisense Interval_174027 chrX 130505679 130506158 + 0 NA Intergenic Intergenic 7871 ENSMUSG00000083920.1 ENSMUSG00000083920 ENSMUST00000117820 Gm14987 processed_pseudogene Interval_95374 chr2 107125704 107126408 + 0 NA Intergenic Intergenic -2096 ENSMUSG00000083181.1 ENSMUSG00000083181 ENSMUST00000120945 Gm13903 unprocessed_pseudogene Interval_10637 chr1 172375861 172377360 + 0 NA promoter-TSS (ENSMUSG00000050229.3) protein_coding-promoter-TSS (ENSMUSG00000050229.3) 64 ENSMUSG00000050229.3 ENSMUSG00000050229 ENSMUST00000052455 Pigm protein_coding Interval_21636 chr11 3368883 3369583 + 0 NA promoter-TSS (ENSMUSG00000020451.17) protein_coding-promoter-TSS (ENSMUSG00000020451.17) -14322 ENSMUSG00000087055.1 ENSMUSG00000087055 ENSMUST00000142322 Gm11948 sense_intronic Interval_141126 chr6 125149294 125149487 + 0 NA promoter-TSS (ENSMUSG00000038271.17) protein_coding-promoter-TSS (ENSMUSG00000038271.17) -138 ENSMUSG00000038271.17 ENSMUSG00000038271 ENSMUST00000150474 Iffo1 protein_coding Interval_153373 chr7 144143983 144144674 + 0 NA intron (ENSMUSG00000037541.22, intron 10 of 17) protein_coding-intron (ENSMUSG00000037541.22, intron 10 of 22) -33243 ENSMUSG00000109500.1 ENSMUSG00000109500 ENSMUST00000207456 Gm44999 TEC Interval_17204 chr10 74952778 74954119 + 0 NA Intergenic Intergenic -13761 ENSMUSG00000040009.6 ENSMUSG00000040009 ENSMUST00000159991 Gnaz protein_coding Interval_150401 chr7 110164089 110165338 + 0 NA Intergenic Intergenic 42667 ENSMUSG00000031016.9 ENSMUSG00000031016 ENSMUST00000033326 Wee1 protein_coding Interval_100626 chr2 170553207 170553960 + 0 NA Intergenic Intergenic -22471 ENSMUSG00000085225.1 ENSMUSG00000085225 ENSMUST00000156516 Gm14637 antisense Interval_21531 chr10 129283801 129284071 + 0 NA Intergenic Intergenic 5063 ENSMUSG00000107803.1 ENSMUSG00000107803 ENSMUST00000204517 Olfr778-ps1 unprocessed_pseudogene Interval_147121 chr7 63493040 63493237 + 0 NA intron (ENSMUSG00000033510.14, intron 1 of 2) protein_coding-intron (ENSMUSG00000033510.14, intron 1 of 13) -48609 ENSMUSG00000097682.1 ENSMUSG00000097682 ENSMUST00000181327 4930554H23Rik lincRNA Interval_45440 chr13 55177848 55179442 + 0 NA Intergenic Intergenic 22962 ENSMUSG00000005320.9 ENSMUSG00000005320 ENSMUST00000162167 Fgfr4 protein_coding Interval_99987 chr2 166254320 166254965 + 0 NA Intergenic Intergenic -19266 ENSMUSG00000084840.1 ENSMUSG00000084840 ENSMUST00000152987 Gm11468 lincRNA Interval_56537 chr14 120137500 120138316 + 0 NA intron (ENSMUSG00000115146.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000115146.1, intron 3 of 8) 3721 ENSMUSG00000115146.1 ENSMUSG00000115146 ENSMUST00000226598 Gm4681 lincRNA Interval_172831 chrX 50787522 50788396 + 0 NA Intergenic Intergenic -90429 ENSMUSG00000031112.10 ENSMUSG00000031112 ENSMUST00000146956 Stk26 protein_coding Interval_110902 chr4 9838280 9838562 + 0 NA Intergenic Intergenic -5951 ENSMUSG00000051279.2 ENSMUSG00000051279 ENSMUST00000057613 Gdf6 protein_coding Interval_3283 chr1 55540049 55540939 + 0 NA intron (ENSMUSG00000038349.10, intron 1 of 5) protein_coding-intron (ENSMUSG00000038349.10, intron 1 of 5) -18966 ENSMUSG00000102831.1 ENSMUSG00000102831 ENSMUST00000193032 Gm37382 TEC Interval_66230 chr16 32460281 32460715 + 0 NA intron (ENSMUSG00000005615.15, intron 3 of 8) protein_coding-intron (ENSMUSG00000005615.15, intron 3 of 8) -2442 ENSMUSG00000005615.15 ENSMUSG00000005615 ENSMUST00000231920 Pcyt1a protein_coding Interval_103877 chr3 54136849 54137283 + 0 NA Intergenic Intergenic -19549 ENSMUSG00000027748.11 ENSMUSG00000027748 ENSMUST00000200341 Trpc4 protein_coding Interval_122551 chr5 23758675 23759159 + 0 NA intron (ENSMUSG00000057541.14, intron 8 of 16) protein_coding-intron (ENSMUSG00000057541.14, intron 7 of 15) 16751 ENSMUSG00000057541.14 ENSMUSG00000057541 ENSMUST00000195909 Pus7 protein_coding Interval_3829 chr1 63313506 63313990 + 0 NA exon (ENSMUSG00000027520.16, exon 3 of 3) protein_coding-exon (ENSMUSG00000027520.16, exon 3 of 3) -13365 ENSMUSG00000094214.1 ENSMUSG00000094214 ENSMUST00000083151 Gm23448 snRNA Interval_63163 chr15 99470825 99471608 + 0 NA exon (ENSMUSG00000037525.5, exon 1 of 1) protein_coding-exon (ENSMUSG00000037525.5, exon 1 of 1) 3492 ENSMUSG00000037525.5 ENSMUSG00000037525 ENSMUST00000229827 Bcdin3d protein_coding Interval_17153 chr10 72678308 72679329 + 0 NA Intergenic Intergenic 22574 ENSMUSG00000019923.14 ENSMUSG00000019923 ENSMUST00000219352 Zwint protein_coding Interval_74930 chr17 57441955 57442205 + 0 NA intron (ENSMUSG00000004730.15, intron 13 of 21) protein_coding-intron (ENSMUSG00000004730.15, intron 13 of 22) 83381 ENSMUSG00000004730.15 ENSMUSG00000004730 ENSMUST00000004850 Adgre1 protein_coding Interval_147327 chr7 65872953 65874529 + 0 NA intron (ENSMUSG00000030513.14, intron 1 of 19) protein_coding-intron (ENSMUSG00000030513.14, intron 1 of 21) -11749 ENSMUSG00000093405.1 ENSMUSG00000093405 ENSMUST00000176744 Gm20684 bidirectional_promoter_lncRNA Interval_65777 chr16 28793093 28793318 + 0 NA Intergenic Intergenic 43162 ENSMUSG00000051065.9 ENSMUSG00000051065 ENSMUST00000232571 Mb21d2 protein_coding Interval_147176 chr7 64057924 64059305 + 0 NA intron (ENSMUSG00000108620.1, intron 2 of 2) lincRNA-intron (ENSMUSG00000108620.1, intron 2 of 2) 1012 ENSMUSG00000108620.1 ENSMUSG00000108620 ENSMUST00000206468 Gm20670 lincRNA Interval_77515 chr17 90615548 90615836 + 0 NA intron (ENSMUSG00000024109.18, intron 2 of 3) protein_coding-intron (ENSMUSG00000024109.18, intron 10 of 20) -47935 ENSMUSG00000093716.1 ENSMUSG00000093716 ENSMUST00000175818 Gm19815 processed_pseudogene Interval_98163 chr2 148920335 148920573 + 0 NA Intergenic Intergenic 11253 ENSMUSG00000081580.1 ENSMUSG00000081580 ENSMUST00000122436 Gm14129 unprocessed_pseudogene Interval_46326 chr13 63967812 63969361 + 0 NA Intergenic Intergenic -22065 ENSMUSG00000113340.1 ENSMUSG00000113340 ENSMUST00000220900 Gm7695 processed_pseudogene Interval_162117 chr8 125286180 125286429 + 0 NA Intergenic Intergenic -58981 ENSMUSG00000086694.1 ENSMUSG00000086694 ENSMUST00000156666 Gm16237 antisense Interval_45989 chr13 59835345 59835657 + 0 NA Intergenic Intergenic 12235 ENSMUSG00000114354.1 ENSMUSG00000114354 ENSMUST00000224737 Gm34961 lincRNA Interval_60708 chr15 76285171 76285994 + 0 NA intron (ENSMUSG00000049653.5, intron 4 of 4) protein_coding-intron (ENSMUSG00000049653.5, intron 4 of 4) 5386 ENSMUSG00000093169.1 ENSMUSG00000093169 ENSMUST00000175428 Mir3079 miRNA Interval_69482 chr16 93807323 93808561 + 0 NA TTS (ENSMUSG00000116927.1) antisense-TTS (ENSMUSG00000116927.1) -13041 ENSMUSG00000097768.2 ENSMUSG00000097768 ENSMUST00000180967 2310043M15Rik antisense Interval_84960 chr19 20353940 20354146 + 0 NA intron (ENSMUSG00000094732.2, intron 2 of 7) lincRNA-intron (ENSMUSG00000094732.2, intron 1 of 7) 36630 ENSMUSG00000024659.15 ENSMUSG00000024659 ENSMUST00000164587 Anxa1 protein_coding Interval_66117 chr16 31740381 31741061 + 0 NA intron (ENSMUSG00000022770.17, intron 1 of 2) protein_coding-intron (ENSMUSG00000022770.17, intron 4 of 24) 6621 ENSMUSG00000089011.1 ENSMUSG00000089011 ENSMUST00000158386 Gm24879 snoRNA Interval_140223 chr6 115661922 115662165 + 0 NA intron (ENSMUSG00000000441.17, intron 1 of 6) protein_coding-intron (ENSMUSG00000000441.17, intron 1 of 16) -13925 ENSMUSG00000107994.1 ENSMUSG00000107994 ENSMUST00000203121 D830050J10Rik bidirectional_promoter_lncRNA Interval_114989 chr4 88128797 88129281 + 0 NA exon (ENSMUSG00000038368.16, exon 4 of 44) protein_coding-exon (ENSMUSG00000038368.16, exon 4 of 44) 6999 ENSMUSG00000070077.2 ENSMUSG00000070077 ENSMUST00000093569 Mir491 miRNA Interval_33903 chr11 119285924 119287826 + 0 NA Intergenic Intergenic 2201 ENSMUSG00000025580.15 ENSMUSG00000025580 ENSMUST00000134743 Eif4a3 protein_coding Interval_90779 chr2 32570538 32571303 + 0 NA promoter-TSS (ENSMUSG00000026810.12) protein_coding-promoter-TSS (ENSMUSG00000026810.12) -1127 ENSMUSG00000026810.12 ENSMUSG00000026810 ENSMUST00000150419 Dpm2 protein_coding Interval_89573 chr2 22923635 22923900 + 0 NA intron (ENSMUSG00000026784.14, intron 7 of 10) protein_coding-intron (ENSMUSG00000026784.14, intron 7 of 10) -9935 ENSMUSG00000081861.1 ENSMUSG00000081861 ENSMUST00000121960 Gm14441 processed_pseudogene Interval_125155 chr5 64969010 64970979 + 0 NA promoter-TSS (ENSMUSG00000029185.14) protein_coding-promoter-TSS (ENSMUSG00000029185.14) -324 ENSMUSG00000077042.2 ENSMUSG00000077042 ENSMUST00000103854 Mir574 miRNA Interval_86951 chr19 45159062 45159382 + 0 NA promoter-TSS (ENSMUSG00000092346.1) antisense-promoter-TSS (ENSMUSG00000092346.1) 82 ENSMUSG00000092346.1 ENSMUSG00000092346 ENSMUST00000173437 Tlx1os antisense Interval_88857 chr2 11699691 11700699 + 0 NA Intergenic Intergenic -5192 ENSMUSG00000023206.16 ENSMUSG00000023206 ENSMUST00000139774 Il15ra protein_coding Interval_47750 chr13 92300018 92300299 + 0 NA intron (ENSMUSG00000014850.15, intron 12 of 24) protein_coding-intron (ENSMUSG00000014850.15, intron 11 of 23) -5822 ENSMUSG00000100622.1 ENSMUSG00000100622 ENSMUST00000188317 Gm20379 protein_coding Interval_76505 chr17 80635568 80636607 + 0 NA intron (ENSMUSG00000024242.15, intron 13 of 32) protein_coding-intron (ENSMUSG00000024242.15, intron 13 of 33) -11101 ENSMUSG00000024242.15 ENSMUSG00000024242 ENSMUST00000234486 Map4k3 protein_coding Interval_161298 chr8 119596147 119597772 + 0 NA TTS (ENSMUSG00000031832.15) protein_coding-TTS (ENSMUSG00000031832.15) 5666 ENSMUSG00000081378.1 ENSMUSG00000081378 ENSMUST00000117927 Rps13-ps4 processed_pseudogene Interval_28435 chr11 75856953 75857210 + 0 NA intron (ENSMUSG00000020847.15, intron 5 of 8) protein_coding-intron (ENSMUSG00000020847.15, intron 4 of 7) -3888 ENSMUSG00000087322.1 ENSMUSG00000087322 ENSMUST00000135873 Gm16075 antisense Interval_60375 chr15 73246189 73247134 + 0 NA intron (ENSMUSG00000022607.18, intron 20 of 26) protein_coding-intron (ENSMUSG00000022607.18, intron 22 of 31) -2885 ENSMUSG00000115693.1 ENSMUSG00000115693 ENSMUST00000228696 1700085D07Rik antisense Interval_162852 chr9 10398256 10398502 + 0 NA intron (ENSMUSG00000039488.15, intron 3 of 24) protein_coding-intron (ENSMUSG00000039488.15, intron 1 of 22) 20711 ENSMUSG00000039488.15 ENSMUSG00000039488 ENSMUST00000160358 Cntn5 protein_coding Interval_171302 chr9 116224087 116224372 + 0 NA intron (ENSMUSG00000111324.1, intron 2 of 3) lincRNA-intron (ENSMUSG00000111324.1, intron 2 of 3) 5427 ENSMUSG00000111324.1 ENSMUSG00000111324 ENSMUST00000217302 Gm31410 lincRNA Interval_140873 chr6 122496527 122496743 + 0 NA intron (ENSMUSG00000040649.15, intron 1 of 1) protein_coding-intron (ENSMUSG00000040649.15, intron 1 of 1) -10196 ENSMUSG00000040649.15 ENSMUSG00000040649 ENSMUST00000204045 Rimklb protein_coding Interval_135892 chr6 48492884 48493937 + 0 NA promoter-TSS (ENSMUSG00000029797.13) protein_coding-promoter-TSS (ENSMUSG00000029797.13) -19028 ENSMUSG00000107476.3 ENSMUSG00000107476 ENSMUST00000205224 Zfp862-ps transcribed_unitary_pseudogene Interval_146093 chr7 43843846 43844070 + 0 NA intron (ENSMUSG00000074155.2, intron 2 of 2) protein_coding-intron (ENSMUSG00000074155.2, intron 1 of 4) 1987 ENSMUSG00000074155.2 ENSMUSG00000074155 ENSMUST00000048444 Klk5 protein_coding Interval_155811 chr8 39031453 39032031 + 0 NA intron (ENSMUSG00000039530.17, intron 1 of 7) protein_coding-intron (ENSMUSG00000039530.17, intron 1 of 9) 25834 ENSMUSG00000039530.17 ENSMUSG00000039530 ENSMUST00000210890 Tusc3 protein_coding Interval_1119 chr1 15837124 15837726 + 0 NA intron (ENSMUSG00000025925.14, intron 8 of 9) protein_coding-intron (ENSMUSG00000025925.14, intron 7 of 8) -15906 ENSMUSG00000104379.1 ENSMUSG00000104379 ENSMUST00000194867 Gm37509 TEC Interval_48626 chr13 100721427 100722451 + 0 NA intron (ENSMUSG00000069089.8, intron 3 of 10) protein_coding-intron (ENSMUSG00000069089.8, intron 3 of 11) 8961 ENSMUSG00000069089.8 ENSMUSG00000069089 ENSMUST00000225578 Cdk7 protein_coding Interval_131484 chr5 137501649 137503259 + 0 NA promoter-TSS (ENSMUSG00000029715.5) protein_coding-promoter-TSS (ENSMUSG00000029715.5) -29 ENSMUSG00000029715.5 ENSMUSG00000029715 ENSMUST00000031728 Pop7 protein_coding Interval_68257 chr16 71354953 71355502 + 0 NA Intergenic Intergenic 105343 ENSMUSG00000116982.1 ENSMUSG00000116982 ENSMUST00000231541 4930567J20Rik lincRNA Interval_31313 chr11 99638717 99639068 + 0 NA Intergenic Intergenic -3808 ENSMUSG00000044649.4 ENSMUSG00000044649 ENSMUST00000058987 Krtap4-2 protein_coding Interval_94482 chr2 91537640 91538322 + 0 NA intron (ENSMUSG00000040549.16, intron 1 of 4) protein_coding-intron (ENSMUSG00000040549.16, intron 1 of 43) -14097 ENSMUSG00000081834.1 ENSMUSG00000081834 ENSMUST00000117149 Gm13770 processed_pseudogene Interval_103195 chr3 36559414 36560358 + 0 NA intron (ENSMUSG00000027714.11, intron 2 of 4) protein_coding-intron (ENSMUSG00000027714.11, intron 7 of 11) 4333 ENSMUSG00000027714.11 ENSMUSG00000027714 ENSMUST00000131316 Exosc9 protein_coding Interval_118857 chr4 134087407 134088072 + 0 NA TTS (ENSMUSG00000012123.17) protein_coding-TTS (ENSMUSG00000012123.17) 7302 ENSMUSG00000000682.7 ENSMUSG00000000682 ENSMUST00000137445 Cd52 protein_coding Interval_62768 chr15 96742575 96742764 + 0 NA Intergenic Intergenic 24409 ENSMUSG00000095638.2 ENSMUSG00000095638 ENSMUST00000177677 Gm8888 processed_pseudogene Interval_91462 chr2 39044020 39044258 + 0 NA intron (ENSMUSG00000026754.16, intron 5 of 17) protein_coding-intron (ENSMUSG00000026754.16, intron 10 of 22) 16362 ENSMUSG00000065127.1 ENSMUSG00000065127 ENSMUST00000083193 Gm26127 snRNA Interval_5409 chr1 88583751 88584599 + 0 NA Intergenic Intergenic 32658 ENSMUSG00000100798.1 ENSMUSG00000100798 ENSMUST00000189394 Gm19589 lincRNA Interval_26783 chr11 60470038 60471798 + 0 NA intron (ENSMUSG00000042678.17, intron 1 of 63) protein_coding-intron (ENSMUSG00000042678.17, intron 1 of 65) 9411 ENSMUSG00000020537.9 ENSMUSG00000020537 ENSMUST00000155731 Drg2 protein_coding Interval_23041 chr11 19194879 19195605 + 0 NA Intergenic Intergenic -77808 ENSMUSG00000102585.1 ENSMUSG00000102585 ENSMUST00000193150 Gm37439 TEC Interval_75398 chr17 66346042 66347142 + 0 NA promoter-TSS (ENSMUSG00000052105.17) protein_coding-promoter-TSS (ENSMUSG00000052105.17) -27080 ENSMUSG00000117010.1 ENSMUSG00000117010 ENSMUST00000233050 Gm49933 processed_pseudogene Interval_46651 chr13 68116819 68117030 + 0 NA Intergenic Intergenic -56316 ENSMUSG00000113365.1 ENSMUSG00000113365 ENSMUST00000222859 Gm48424 unprocessed_pseudogene Interval_73779 chr17 43569769 43570136 + 0 NA intron (ENSMUSG00000023913.17, intron 1 of 2) protein_coding-intron (ENSMUSG00000023913.17, intron 1 of 11) 1279 ENSMUSG00000023913.17 ENSMUSG00000023913 ENSMUST00000163489 Pla2g7 protein_coding Interval_20303 chr10 116751902 116752191 + 0 NA Intergenic Intergenic 22793 ENSMUSG00000112924.1 ENSMUSG00000112924 ENSMUST00000218193 4930579P08Rik lincRNA Interval_125996 chr5 76729240 76729742 + 0 NA intron (ENSMUSG00000036377.19, intron 1 of 11) protein_coding-intron (ENSMUSG00000036377.19, intron 1 of 4) 13022 ENSMUSG00000083874.1 ENSMUSG00000083874 ENSMUST00000121248 Gm7494 processed_pseudogene Interval_149229 chr7 96448108 96448349 + 0 NA intron (ENSMUSG00000048078.16, intron 3 of 4) protein_coding-intron (ENSMUSG00000048078.16, intron 3 of 32) -12211 ENSMUSG00000082780.2 ENSMUSG00000082780 ENSMUST00000117302 Rps11-ps5 processed_pseudogene Interval_946 chr1 13341396 13341772 + 0 NA intron (ENSMUSG00000005886.14, intron 1 of 12) protein_coding-intron (ENSMUSG00000005886.14, intron 1 of 22) 6620 ENSMUSG00000103085.1 ENSMUSG00000103085 ENSMUST00000195506 Gm38120 TEC Interval_160948 chr8 115995977 115996751 + 0 NA Intergenic Intergenic -24293 ENSMUSG00000110620.1 ENSMUSG00000110620 ENSMUST00000212988 Gm45733 lincRNA Interval_108634 chr3 129679174 129679574 + 0 NA intron (ENSMUSG00000028017.7, intron 17 of 17) protein_coding-intron (ENSMUSG00000028017.7, intron 23 of 23) 4867 ENSMUSG00000092701.1 ENSMUSG00000092701 ENSMUST00000174960 Gm24515 miRNA Interval_37538 chr12 69681075 69682527 + 0 NA promoter-TSS (ENSMUSG00000034801.13) protein_coding-promoter-TSS (ENSMUSG00000034801.13) 42972 ENSMUSG00000020988.9 ENSMUSG00000020988 ENSMUST00000223387 L2hgdh protein_coding Interval_129026 chr5 116855610 116855799 + 0 NA Intergenic Intergenic -25184 ENSMUSG00000106909.1 ENSMUSG00000106909 ENSMUST00000201752 Gm43122 lincRNA Interval_40811 chr12 108553060 108555624 + 0 NA promoter-TSS (ENSMUSG00000021262.15) protein_coding-promoter-TSS (ENSMUSG00000021262.15) 1122 ENSMUSG00000097788.2 ENSMUSG00000097788 ENSMUST00000220796 Gm16596 antisense Interval_110839 chr4 8871749 8871979 + 0 NA Intergenic Intergenic 16633 ENSMUSG00000041235.12 ENSMUSG00000041235 ENSMUST00000222546 Chd7 protein_coding Interval_89686 chr2 24576472 24576671 + 0 NA Intergenic Intergenic -9874 ENSMUSG00000085330.1 ENSMUSG00000085330 ENSMUST00000155475 Gm13417 lincRNA Interval_663 chr1 9699725 9701121 + 0 NA promoter-TSS (ENSMUSG00000025912.16) protein_coding-promoter-TSS (ENSMUSG00000025912.16) -769 ENSMUSG00000025912.16 ENSMUSG00000025912 ENSMUST00000188212 Mybl1 protein_coding Interval_139582 chr6 101643050 101644535 + 0 NA Intergenic Intergenic -8442 ENSMUSG00000107738.1 ENSMUSG00000107738 ENSMUST00000204183 Gm32453 processed_pseudogene Interval_30113 chr11 89289399 89289691 + 0 NA Intergenic Intergenic 12787 ENSMUSG00000048616.4 ENSMUSG00000048616 ENSMUST00000061728 Nog protein_coding Interval_76219 chr17 77877035 77877312 + 0 NA Intergenic Intergenic -189824 ENSMUSG00000117553.1 ENSMUSG00000117553 ENSMUST00000234795 Gm4711 processed_pseudogene Interval_104990 chr3 79548720 79549631 + 0 NA intron (ENSMUSG00000061175.12, intron 1 of 17) protein_coding-intron (ENSMUSG00000061175.12, intron 1 of 16) 3018 ENSMUSG00000089746.1 ENSMUSG00000089746 ENSMUST00000161319 Gm3513 sense_intronic Interval_53605 chr14 59843709 59844007 + 0 NA intron (ENSMUSG00000021983.16, intron 26 of 35) protein_coding-intron (ENSMUSG00000021983.16, intron 26 of 35) 196633 ENSMUSG00000087286.1 ENSMUSG00000087286 ENSMUST00000132939 Gm9013 processed_pseudogene Interval_123585 chr5 33638507 33638706 + 0 NA intron (ENSMUSG00000004642.13, intron 7 of 7) protein_coding-intron (ENSMUSG00000004642.13, intron 7 of 7) 8681 ENSMUSG00000097271.1 ENSMUSG00000097271 ENSMUST00000181102 Gm9903 protein_coding Interval_173623 chrX 101132182 101132461 + 0 NA intron (ENSMUSG00000046032.16, intron 4 of 5) protein_coding-intron (ENSMUSG00000046032.16, intron 4 of 5) 9231 ENSMUSG00000088114.1 ENSMUSG00000088114 ENSMUST00000157489 Gm24061 snoRNA Interval_85093 chr19 22747258 22747795 + 0 NA intron (ENSMUSG00000052387.16, intron 6 of 24) protein_coding-intron (ENSMUSG00000052387.16, intron 6 of 26) -3079 ENSMUSG00000065507.3 ENSMUSG00000065507 ENSMUST00000083573 Mir204 miRNA Interval_130339 chr5 126092628 126093383 + 0 NA Intergenic Intergenic -66532 ENSMUSG00000105189.1 ENSMUSG00000105189 ENSMUST00000200064 Gm7774 processed_pseudogene Interval_24045 chr11 29748444 29750285 + 0 NA TTS (ENSMUSG00000044072.14) protein_coding-TTS (ENSMUSG00000044072.14) 53735 ENSMUSG00000044072.14 ENSMUSG00000044072 ENSMUST00000109452 Eml6 protein_coding Interval_48930 chr13 104947947 104948222 + 0 NA exon (ENSMUSG00000021719.9, exon 6 of 6) protein_coding-exon (ENSMUSG00000021719.9, exon 6 of 6) 29304 ENSMUSG00000114326.1 ENSMUSG00000114326 ENSMUST00000171334 Gm4938 processed_pseudogene Interval_10220 chr1 167278899 167280044 + 0 NA intron (ENSMUSG00000026558.13, intron 1 of 2) protein_coding-intron (ENSMUSG00000026558.13, intron 1 of 6) -5597 ENSMUSG00000102909.1 ENSMUSG00000102909 ENSMUST00000193383 Gm2453 lincRNA Interval_108002 chr3 119605719 119606437 + 0 NA Intergenic Intergenic 32796 ENSMUSG00000087806.1 ENSMUSG00000087806 ENSMUST00000157181 Gm23432 snoRNA Interval_81926 chr18 65934471 65935613 + 0 NA TTS (ENSMUSG00000024518.4) protein_coding-TTS (ENSMUSG00000024518.4) -2515 ENSMUSG00000097907.2 ENSMUSG00000097907 ENSMUST00000235300 Raxos1 antisense Interval_72026 chr17 27625410 27626287 + 0 NA intron (ENSMUSG00000117338.1, intron 5 of 8) protein_coding-intron (ENSMUSG00000117338.1, intron 5 of 8) 2351 ENSMUSG00000116571.1 ENSMUSG00000116571 ENSMUST00000231767 Gm49741 bidirectional_promoter_lncRNA Interval_121524 chr5 3169239 3170712 + 0 NA Intergenic Intergenic -42360 ENSMUSG00000105800.1 ENSMUSG00000105800 ENSMUST00000196472 Gm18985 unprocessed_pseudogene Interval_165548 chr9 49339831 49341479 + 0 NA promoter-TSS (ENSMUSG00000032259.8) protein_coding-promoter-TSS (ENSMUSG00000032259.8) 28 ENSMUSG00000032259.8 ENSMUSG00000032259 ENSMUST00000075764 Drd2 protein_coding Interval_137662 chr6 78202297 78203263 + 0 NA Intergenic Intergenic -13098 ENSMUSG00000108045.1 ENSMUSG00000108045 ENSMUST00000075809 Gm5576 processed_pseudogene Interval_173555 chrX 99294688 99295365 + 0 NA Intergenic Intergenic 123869 ENSMUSG00000085053.1 ENSMUSG00000085053 ENSMUST00000152025 Gm14809 lincRNA Interval_54194 chr14 66150511 66150894 + 0 NA intron (ENSMUSG00000022041.10, intron 6 of 6) protein_coding-intron (ENSMUSG00000022041.10, intron 6 of 6) 15663 ENSMUSG00000022041.10 ENSMUSG00000022041 ENSMUST00000022620 Chrna2 protein_coding Interval_27426 chr11 67553817 67555005 + 0 NA intron (ENSMUSG00000033066.16, intron 3 of 3) protein_coding-intron (ENSMUSG00000033066.16, intron 2 of 14) 23055 ENSMUSG00000087058.1 ENSMUSG00000087058 ENSMUST00000152963 Gm12301 antisense Interval_52984 chr14 52654346 52655692 + 0 NA intron (ENSMUSG00000104620.1, intron 1 of 1) TR_V_gene-intron (ENSMUSG00000104620.1, intron 1 of 1) 202 ENSMUSG00000104620.1 ENSMUSG00000104620 ENSMUST00000198019 Trav7-1 TR_V_gene Interval_119577 chr4 138468758 138469688 + 0 NA Intergenic Intergenic 14909 ENSMUSG00000046447.3 ENSMUSG00000046447 ENSMUST00000050918 Camk2n1 protein_coding Interval_150128 chr7 107201738 107202417 + 0 NA Intergenic Intergenic -1888 ENSMUSG00000086261.1 ENSMUSG00000086261 ENSMUST00000130985 Gm3765 processed_pseudogene Interval_17392 chr10 76316607 76317063 + 0 NA intron (ENSMUSG00000020231.15, intron 5 of 14) protein_coding-intron (ENSMUSG00000020231.15, intron 5 of 37) 23670 ENSMUSG00000089711.1 ENSMUSG00000089711 ENSMUST00000161924 Gm16240 antisense Interval_93700 chr2 75981142 75982088 + 0 NA exon (ENSMUSG00000075271.4, exon 1 of 1) protein_coding-exon (ENSMUSG00000075271.4, exon 1 of 1) 352 ENSMUSG00000075271.4 ENSMUSG00000075271 ENSMUST00000099994 Ttc30a1 protein_coding Interval_147655 chr7 70734257 70734471 + 0 NA Intergenic Intergenic -18052 ENSMUSG00000089401.1 ENSMUSG00000089401 ENSMUST00000158776 Gm24880 rRNA Interval_29955 chr11 88356062 88357623 + 0 NA intron (ENSMUSG00000085246.1, intron 1 of 2) protein_coding-intron (ENSMUSG00000069769.13, intron 11 of 13) 551 ENSMUSG00000085246.1 ENSMUSG00000085246 ENSMUST00000143208 Gm15893 antisense Interval_139815 chr6 109046832 109047324 + 0 NA Intergenic Intergenic -78607 ENSMUSG00000107501.1 ENSMUSG00000107501 ENSMUST00000203862 Gm29781 processed_pseudogene Interval_28921 chr11 79287397 79287626 + 0 NA Intergenic Intergenic 9395 ENSMUSG00000055072.2 ENSMUSG00000055072 ENSMUST00000068448 Gm9964 TEC Interval_117193 chr4 120426297 120426672 + 0 NA intron (ENSMUSG00000000085.16, intron 1 of 1) protein_coding-intron (ENSMUSG00000000085.16, intron 1 of 16) 21103 ENSMUSG00000000085.16 ENSMUSG00000000085 ENSMUST00000133169 Scmh1 protein_coding Interval_14562 chr10 35817580 35817807 + 0 NA Intergenic Intergenic -20797 ENSMUSG00000111550.1 ENSMUSG00000111550 ENSMUST00000213846 Gm49446 lincRNA Interval_93862 chr2 77605351 77606691 + 0 NA intron (ENSMUSG00000027016.17, intron 3 of 3) protein_coding-intron (ENSMUSG00000027016.17, intron 1 of 7) 97251 ENSMUSG00000027016.17 ENSMUSG00000027016 ENSMUST00000129077 Zfp385b protein_coding Interval_71828 chr17 26372772 26373043 + 0 NA Intergenic Intergenic -41922 ENSMUSG00000034413.14 ENSMUSG00000034413 ENSMUST00000053020 Neurl1b protein_coding Interval_7047 chr1 123791211 123791636 + 0 NA intron (ENSMUSG00000036815.17, intron 3 of 25) protein_coding-intron (ENSMUSG00000036815.17, intron 3 of 25) 13998 ENSMUSG00000101994.1 ENSMUSG00000101994 ENSMUST00000188563 Gm18875 processed_pseudogene Interval_168630 chr9 84503027 84503684 + 0 NA Intergenic Intergenic -74605 ENSMUSG00000111245.1 ENSMUSG00000111245 ENSMUST00000214502 Gm39388 lincRNA Interval_99772 chr2 164817266 164818088 + 0 NA intron (ENSMUSG00000045822.4, intron 1 of 1) protein_coding-intron (ENSMUSG00000045822.4, intron 1 of 1) -5336 ENSMUSG00000017764.2 ENSMUSG00000017764 ENSMUST00000132282 Zswim1 protein_coding Interval_99888 chr2 165621591 165621856 + 0 NA intron (ENSMUSG00000017897.18, intron 1 of 15) protein_coding-intron (ENSMUSG00000017897.18, intron 1 of 15) -19936 ENSMUSG00000100796.1 ENSMUSG00000100796 ENSMUST00000187099 Gm28163 lincRNA Interval_108245 chr3 122936252 122937559 + 0 NA intron (ENSMUSG00000039701.11, intron 14 of 15) protein_coding-intron (ENSMUSG00000039701.11, intron 14 of 15) 12702 ENSMUSG00000054091.9 ENSMUSG00000054091 ENSMUST00000106429 1810037I17Rik protein_coding Interval_120734 chr4 150338087 150339095 + 0 NA intron (ENSMUSG00000039852.17, intron 1 of 22) protein_coding-intron (ENSMUSG00000039852.17, intron 1 of 22) 17398 ENSMUSG00000089292.1 ENSMUSG00000089292 ENSMUST00000158667 Gm23209 snRNA Interval_107899 chr3 116668586 116669431 + 0 NA TTS (ENSMUSG00000027957.13) protein_coding-TTS (ENSMUSG00000027957.13) 5276 ENSMUSG00000106125.1 ENSMUSG00000106125 ENSMUST00000197000 4930512P04Rik lincRNA Interval_58807 chr15 38197373 38197663 + 0 NA intron (ENSMUSG00000115680.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000115680.1, intron 1 of 2) 4699 ENSMUSG00000115680.1 ENSMUSG00000115680 ENSMUST00000227576 Gm35167 lincRNA Interval_67405 chr16 48355481 48356205 + 0 NA Intergenic Intergenic -12799 ENSMUSG00000116889.1 ENSMUSG00000116889 ENSMUST00000231810 Gm49771 processed_pseudogene Interval_93893 chr2 78176723 78177046 + 0 NA intron (ENSMUSG00000085431.7, intron 2 of 6) lincRNA-intron (ENSMUSG00000085431.7, intron 2 of 6) -124808 ENSMUSG00000054510.5 ENSMUSG00000054510 ENSMUST00000166653 Gm14461 lincRNA Interval_170806 chr9 110887884 110890864 + 0 NA intron (ENSMUSG00000044037.15, intron 4 of 18) protein_coding-intron (ENSMUSG00000044037.15, intron 11 of 26) 3626 ENSMUSG00000044037.15 ENSMUSG00000044037 ENSMUST00000156673 Als2cl protein_coding Interval_168225 chr9 78038820 78039416 + 0 NA Intergenic Intergenic 11173 ENSMUSG00000111850.1 ENSMUSG00000111850 ENSMUST00000216404 Gm47829 processed_pseudogene Interval_54666 chr14 73117759 73119604 + 0 NA Intergenic Intergenic -24182 ENSMUSG00000022106.14 ENSMUSG00000022106 ENSMUST00000170278 Rcbtb2 protein_coding Interval_40102 chr12 101293327 101294180 + 0 NA intron (ENSMUSG00000113134.2, intron 10 of 21) transcribed_unprocessed_pseudogene-intron (ENSMUSG00000113134.2, intron 10 of 21) -70055 ENSMUSG00000064424.1 ENSMUSG00000064424 ENSMUST00000082490 Gm22749 snRNA Interval_140049 chr6 113651468 113652457 + 0 NA intron (ENSMUSG00000060477.14, intron 2 of 11) protein_coding-intron (ENSMUSG00000060477.14, intron 2 of 12) -10441 ENSMUSG00000107723.1 ENSMUSG00000107723 ENSMUST00000203570 Gm43964 antisense Interval_143447 chr7 6862272 6863016 + 0 NA intron (ENSMUSG00000051527.11, intron 2 of 7) protein_coding-intron (ENSMUSG00000051527.11, intron 2 of 7) -22523 ENSMUSG00000092875.2 ENSMUSG00000092875 ENSMUST00000175134 Gm22649 misc_RNA Interval_9041 chr1 153249366 153249603 + 0 NA intron (ENSMUSG00000026478.14, intron 3 of 3) protein_coding-intron (ENSMUSG00000026478.14, intron 10 of 27) -10158 ENSMUSG00000026478.14 ENSMUSG00000026478 ENSMUST00000159251 Lamc1 protein_coding Interval_131807 chr5 140002119 140003109 + 0 NA Intergenic Intergenic 29562 ENSMUSG00000105453.1 ENSMUSG00000105453 ENSMUST00000198772 Gm43702 TEC Interval_84954 chr19 20010270 20010545 + 0 NA intron (ENSMUSG00000118150.1, intron 2 of 3) lincRNA-intron (ENSMUSG00000118150.1, intron 2 of 3) 23228 ENSMUSG00000064783.1 ENSMUSG00000064783 ENSMUST00000082849 Gm22684 snoRNA Interval_49683 chr13 113981617 113981901 + 0 NA intron (ENSMUSG00000042348.10, intron 5 of 5) protein_coding-intron (ENSMUSG00000042348.10, intron 4 of 4) 138657 ENSMUSG00000114696.1 ENSMUSG00000114696 ENSMUST00000223997 Gm47479 TEC Interval_36048 chr12 33927703 33929207 + 0 NA promoter-TSS (ENSMUSG00000046518.3) protein_coding-promoter-TSS (ENSMUSG00000046518.3) 1 ENSMUSG00000114082.1 ENSMUSG00000114082 ENSMUST00000222601 Gm40383 bidirectional_promoter_lncRNA Interval_62909 chr15 97829097 97829896 + 0 NA intron (ENSMUSG00000022475.19, intron 1 of 25) protein_coding-intron (ENSMUSG00000022475.19, intron 1 of 24) 1998 ENSMUSG00000022475.19 ENSMUSG00000022475 ENSMUST00000134258 Hdac7 protein_coding Interval_25014 chr11 43088584 43088812 + 0 NA Intergenic Intergenic 27596 ENSMUSG00000085951.1 ENSMUSG00000085951 ENSMUST00000142108 Gm12145 lincRNA Interval_27032 chr11 62477000 62477212 + 0 NA intron (ENSMUSG00000014245.8, intron 2 of 6) protein_coding-intron (ENSMUSG00000014245.8, intron 2 of 6) -5691 ENSMUSG00000086310.1 ENSMUSG00000086310 ENSMUST00000153718 Gm12278 antisense Interval_71804 chr17 26200764 26201678 + 0 NA promoter-TSS (ENSMUSG00000073433.11) protein_coding-promoter-TSS (ENSMUSG00000073433.11) -4305 ENSMUSG00000024184.15 ENSMUSG00000024184 ENSMUST00000142410 Pdia2 protein_coding Interval_9178 chr1 154788219 154788423 + 0 NA intron (ENSMUSG00000004110.17, intron 1 of 3) protein_coding-intron (ENSMUSG00000004110.17, intron 1 of 3) 28620 ENSMUSG00000004110.17 ENSMUSG00000004110 ENSMUST00000186256 Cacna1e protein_coding Interval_73776 chr17 43534506 43535414 + 0 NA exon (ENSMUSG00000096140.2, exon 3 of 3) protein_coding-exon (ENSMUSG00000096140.2, exon 3 of 3) 8679 ENSMUSG00000096140.2 ENSMUSG00000096140 ENSMUST00000178772 Ankrd66 protein_coding Interval_144311 chr7 24422595 24423113 + 0 NA TTS (ENSMUSG00000002210.11) protein_coding-TTS (ENSMUSG00000002210.11) 8121 ENSMUSG00000002210.11 ENSMUSG00000002210 ENSMUST00000146686 Smg9 protein_coding Interval_76161 chr17 75779761 75780103 + 0 NA Intergenic Intergenic -53905 ENSMUSG00000117587.1 ENSMUSG00000117587 ENSMUST00000235034 Gm50099 processed_pseudogene Interval_100595 chr2 170342800 170344179 + 0 NA Intergenic Intergenic 6251 ENSMUSG00000013523.13 ENSMUSG00000013523 ENSMUST00000145920 Bcas1 protein_coding Interval_108015 chr3 119946285 119946720 + 0 NA Intergenic Intergenic -22229 ENSMUSG00000104726.1 ENSMUSG00000104726 ENSMUST00000195974 Gm18384 processed_pseudogene Interval_122378 chr5 21809906 21811664 + 0 NA TTS (ENSMUSG00000029015.9) protein_coding-TTS (ENSMUSG00000029015.9) 9732 ENSMUSG00000029015.9 ENSMUSG00000029015 ENSMUST00000150012 Slc26a5 protein_coding Interval_9248 chr1 155484039 155484619 + 0 NA Intergenic Intergenic 42814 ENSMUSG00000073535.5 ENSMUSG00000073535 ENSMUST00000194133 Gm5532 lincRNA Interval_36821 chr12 54394932 54395895 + 0 NA Intergenic Intergenic -4095 ENSMUSG00000113970.1 ENSMUSG00000113970 ENSMUST00000223334 Gm7550 lincRNA Interval_135212 chr6 37580432 37580830 + 0 NA Intergenic Intergenic 39217 ENSMUSG00000106889.1 ENSMUSG00000106889 ENSMUST00000201541 Gm7463 processed_pseudogene Interval_32642 chr11 109369101 109369342 + 0 NA intron (ENSMUSG00000020611.14, intron 2 of 3) protein_coding-intron (ENSMUSG00000020611.14, intron 2 of 3) -5978 ENSMUSG00000056687.9 ENSMUSG00000056687 ENSMUST00000190563 Gm11696 antisense Interval_92501 chr2 60142495 60143974 + 0 NA intron (ENSMUSG00000026987.16, intron 2 of 3) protein_coding-intron (ENSMUSG00000026987.16, intron 2 of 3) 9179 ENSMUSG00000082330.1 ENSMUSG00000082330 ENSMUST00000119390 Ldha-ps processed_pseudogene Interval_135797 chr6 47414222 47414429 + 0 NA Intergenic Intergenic 18764 ENSMUSG00000107853.1 ENSMUSG00000107853 ENSMUST00000203098 Gm18584 processed_pseudogene Interval_56441 chr14 118776389 118776613 + 0 NA Intergenic Intergenic 1349 ENSMUSG00000088105.1 ENSMUSG00000088105 ENSMUST00000157480 Gm22379 snoRNA Interval_124604 chr5 52254587 52255164 + 0 NA intron (ENSMUSG00000097145.5, intron 3 of 3) processed_transcript-intron (ENSMUSG00000097145.5, intron 3 of 3) 15539 ENSMUSG00000105328.1 ENSMUSG00000105328 ENSMUST00000197541 Gm43180 TEC Interval_84346 chr19 10258233 10258836 + 0 NA intron (ENSMUSG00000035735.10, intron 9 of 19) protein_coding-intron (ENSMUSG00000035735.10, intron 9 of 19) -1663 ENSMUSG00000035735.10 ENSMUSG00000035735 ENSMUST00000156361 Dagla protein_coding Interval_50806 chr14 19955461 19955871 + 0 NA intron (ENSMUSG00000043004.13, intron 3 of 5) protein_coding-intron (ENSMUSG00000043004.13, intron 3 of 5) 21518 ENSMUSG00000043004.13 ENSMUSG00000043004 ENSMUST00000161247 Gng2 protein_coding Interval_170106 chr9 104569454 104570318 + 0 NA promoter-TSS (ENSMUSG00000032564.16) protein_coding-promoter-TSS (ENSMUSG00000032564.16) -88376 ENSMUSG00000089116.1 ENSMUSG00000089116 ENSMUST00000158491 Gm25904 snoRNA Interval_130103 chr5 124292564 124293230 + 0 NA intron (ENSMUSG00000038126.17, intron 10 of 22) protein_coding-intron (ENSMUSG00000038126.17, intron 9 of 21) 8930 ENSMUSG00000105228.1 ENSMUSG00000105228 ENSMUST00000200448 Gm43340 TEC Interval_89179 chr2 17876905 17877187 + 0 NA Intergenic Intergenic -79062 ENSMUSG00000081851.1 ENSMUSG00000081851 ENSMUST00000120245 Gm13323 processed_pseudogene Interval_47956 chr13 94630805 94631182 + 0 NA Intergenic Intergenic 11713 ENSMUSG00000103438.1 ENSMUSG00000103438 ENSMUST00000191800 Gm36991 TEC Interval_48090 chr13 95939348 95939746 + 0 NA Intergenic Intergenic -42427 ENSMUSG00000065866.1 ENSMUSG00000065866 ENSMUST00000083932 Gm24032 snRNA Interval_93037 chr2 69721530 69723727 + 0 NA promoter-TSS (ENSMUSG00000042133.16) protein_coding-promoter-TSS (ENSMUSG00000042133.16) 83 ENSMUSG00000042133.16 ENSMUSG00000042133 ENSMUST00000143954 Ppig protein_coding Interval_158114 chr8 78838764 78839020 + 0 NA Intergenic Intergenic -25678 ENSMUSG00000031683.16 ENSMUSG00000031683 ENSMUST00000146824 Lsm6 protein_coding Interval_40979 chr12 110399507 110401644 + 0 NA Intergenic Intergenic -46732 ENSMUSG00000017843.14 ENSMUSG00000017843 ENSMUST00000221074 Ppp2r5c protein_coding Interval_74195 chr17 47056667 47056908 + 0 NA Intergenic Intergenic -13748 ENSMUSG00000062472.6 ENSMUSG00000062472 ENSMUST00000075152 Gm4945 processed_pseudogene Interval_27592 chr11 68906538 68906707 + 0 NA exon (ENSMUSG00000060938.14, exon 2 of 2) protein_coding-exon (ENSMUSG00000060938.14, exon 2 of 2) -1398 ENSMUSG00000088910.1 ENSMUSG00000088910 ENSMUST00000158285 Gm22608 snRNA Interval_91520 chr2 40381238 40381596 + 0 NA Intergenic Intergenic 82900 ENSMUSG00000088512.1 ENSMUSG00000088512 ENSMUST00000157887 Gm24467 snoRNA Interval_158886 chr8 87700246 87700657 + 0 NA intron (ENSMUSG00000045333.15, intron 3 of 5) protein_coding-intron (ENSMUSG00000045333.15, intron 4 of 6) 63794 ENSMUSG00000089301.1 ENSMUSG00000089301 ENSMUST00000158676 Gm24841 misc_RNA Interval_24468 chr11 33489535 33490040 + 0 NA intron (ENSMUSG00000040594.19, intron 5 of 6) protein_coding-intron (ENSMUSG00000040594.19, intron 5 of 11) -37273 ENSMUSG00000040594.19 ENSMUSG00000040594 ENSMUST00000147751 Ranbp17 protein_coding Interval_112448 chr4 41331005 41331637 + 0 NA Intergenic Intergenic 14630 ENSMUSG00000088528.1 ENSMUSG00000088528 ENSMUST00000157903 Gm26084 snRNA Interval_144201 chr7 19928171 19929291 + 0 NA Intergenic Intergenic 8002 ENSMUSG00000090075.1 ENSMUSG00000090075 ENSMUST00000162649 Gm16251 antisense Interval_159610 chr8 95780895 95782054 + 0 NA intron (ENSMUSG00000036550.16, intron 2 of 47) protein_coding-intron (ENSMUSG00000036550.16, intron 2 of 47) -2944 ENSMUSG00000110556.1 ENSMUSG00000110556 ENSMUST00000212863 Gm45762 TEC Interval_132414 chr5 144788038 144788572 + 0 NA TTS (ENSMUSG00000045482.16) protein_coding-TTS (ENSMUSG00000045482.16) 13880 ENSMUSG00000088685.1 ENSMUSG00000088685 ENSMUST00000158060 Gm23995 snoRNA Interval_72599 chr17 30945393 30946282 + 0 NA promoter-TSS (ENSMUSG00000118284.1) lincRNA-promoter-TSS (ENSMUSG00000118284.1) -56 ENSMUSG00000118284.1 ENSMUSG00000118284 ENSMUST00000236151 Gm41562 lincRNA Interval_19312 chr10 96596338 96596545 + 0 NA promoter-TSS (ENSMUSG00000112354.1) lincRNA-promoter-TSS (ENSMUSG00000112354.1) -710 ENSMUSG00000112354.1 ENSMUSG00000112354 ENSMUST00000219313 Gm33843 lincRNA Interval_46204 chr13 62466346 62467331 + 0 NA promoter-TSS (ENSMUSG00000076246.1) miRNA-promoter-TSS (ENSMUSG00000076246.1) -27 ENSMUSG00000076246.1 ENSMUSG00000076246 ENSMUST00000102291 Gm22256 miRNA Interval_67211 chr16 44478640 44478886 + 0 NA intron (ENSMUSG00000071550.14, intron 31 of 33) protein_coding-intron (ENSMUSG00000071550.14, intron 32 of 34) 79366 ENSMUSG00000093046.1 ENSMUSG00000093046 ENSMUST00000175305 Mir3081 miRNA Interval_168693 chr9 85988497 85989190 + 0 NA Intergenic Intergenic -45643 ENSMUSG00000110946.1 ENSMUSG00000110946 ENSMUST00000213921 Gm47604 lincRNA Interval_87022 chr19 45581324 45583327 + 0 NA intron (ENSMUSG00000040913.11, intron 1 of 3) protein_coding-intron (ENSMUSG00000040913.11, intron 6 of 8) 7151 ENSMUSG00000041035.9 ENSMUSG00000041035 ENSMUST00000161373 Gm17018 protein_coding Interval_29196 chr11 81440628 81441518 + 0 NA intron (ENSMUSG00000020704.13, intron 1 of 9) protein_coding-intron (ENSMUSG00000020704.13, intron 1 of 9) 56060 ENSMUSG00000086971.1 ENSMUSG00000086971 ENSMUST00000141593 4930527B05Rik antisense Interval_138715 chr6 91365666 91365953 + 0 NA promoter-TSS (ENSMUSG00000030093.7) protein_coding-promoter-TSS (ENSMUSG00000030093.7) -712 ENSMUSG00000030093.7 ENSMUSG00000030093 ENSMUST00000132936 Wnt7a protein_coding Interval_70407 chr17 9879692 9879915 + 0 NA intron (ENSMUSG00000117110.1, intron 3 of 3) lincRNA-intron (ENSMUSG00000117110.1, intron 3 of 3) 15384 ENSMUSG00000117110.1 ENSMUSG00000117110 ENSMUST00000233332 Gm49808 lincRNA Interval_51470 chr14 27807814 27808699 + 0 NA intron (ENSMUSG00000040640.11, intron 1 of 4) protein_coding-intron (ENSMUSG00000040640.11, intron 3 of 15) 67961 ENSMUSG00000109849.1 ENSMUSG00000109849 ENSMUST00000211470 Gm45645 antisense Interval_74979 chr17 58835625 58836058 + 0 NA exon (ENSMUSG00000117100.1, exon 1 of 4) lincRNA-exon (ENSMUSG00000117100.1, exon 1 of 4) 200 ENSMUSG00000117100.1 ENSMUSG00000117100 ENSMUST00000232926 A330072L02Rik lincRNA Interval_95 GL456221.1 120490 121176 + 0 NA NA NA NA NA Interval_40728 chr12 107969423 107970222 + 0 NA intron (ENSMUSG00000048251.15, intron 2 of 3) protein_coding-intron (ENSMUSG00000048251.15, intron 2 of 3) 33592 ENSMUSG00000048251.15 ENSMUSG00000048251 ENSMUST00000109891 Bcl11b protein_coding Interval_98324 chr2 151504170 151504408 + 0 NA TTS (ENSMUSG00000027455.16) protein_coding-TTS (ENSMUSG00000027455.16) 1962 ENSMUSG00000027455.16 ENSMUSG00000027455 ENSMUST00000139229 Nsfl1c protein_coding Interval_91558 chr2 43294508 43294729 + 0 NA Intergenic Intergenic 224780 ENSMUSG00000080994.2 ENSMUSG00000080994 ENSMUST00000119418 Gm13464 processed_pseudogene Interval_100485 chr2 169478386 169478867 + 0 NA Intergenic Intergenic -1991 ENSMUSG00000087074.1 ENSMUSG00000087074 ENSMUST00000156239 Gm14249 lincRNA Interval_87945 chr19 57298038 57298518 + 0 NA intron (ENSMUSG00000025085.16, intron 1 of 20) protein_coding-intron (ENSMUSG00000025085.16, intron 1 of 6) 16641 ENSMUSG00000025085.16 ENSMUSG00000025085 ENSMUST00000133369 Ablim1 protein_coding Interval_122567 chr5 23831047 23832016 + 0 NA promoter-TSS (ENSMUSG00000118627.1) transcribed_processed_pseudogene-promoter-TSS (ENSMUSG00000118627.1) 92 ENSMUSG00000118627.1 ENSMUSG00000118627 ENSMUST00000126393 AC117663.2 transcribed_processed_pseudogene Interval_67458 chr16 48993314 48994829 + 0 NA promoter-TSS (ENSMUSG00000033031.13) protein_coding-promoter-TSS (ENSMUSG00000033031.13) -21766 ENSMUSG00000033031.13 ENSMUSG00000033031 ENSMUST00000149004 Cip2a protein_coding Interval_151800 chr7 126746708 126747460 + 0 NA Intergenic Intergenic -2471 ENSMUSG00000108649.1 ENSMUSG00000108649 ENSMUST00000205725 Gm44855 processed_pseudogene Interval_87070 chr19 45937413 45938222 + 0 NA intron (ENSMUSG00000039901.10, intron 16 of 20) protein_coding-intron (ENSMUSG00000039901.10, intron 16 of 25) -1388 ENSMUSG00000039901.10 ENSMUSG00000039901 ENSMUST00000236730 Armh3 protein_coding Interval_63145 chr15 99369883 99370956 + 0 NA promoter-TSS (ENSMUSG00000023008.18) protein_coding-promoter-TSS (ENSMUSG00000023008.18) -2284 ENSMUSG00000095635.1 ENSMUSG00000095635 ENSMUST00000179471 Gm22951 snRNA Interval_14555 chr10 35444422 35445132 + 0 NA Intergenic Intergenic 40619 ENSMUSG00000111753.1 ENSMUSG00000111753 ENSMUST00000214107 1700054O05Rik lincRNA Interval_109235 chr3 138152278 138153061 + 0 NA exon (ENSMUSG00000004127.12, exon 6 of 6) protein_coding-exon (ENSMUSG00000004127.12, exon 6 of 6) -7701 ENSMUSG00000028158.14 ENSMUSG00000028158 ENSMUST00000197680 Mttp protein_coding Interval_2501 chr1 39796241 39796878 + 0 NA Intergenic Intergenic 8773 ENSMUSG00000091937.3 ENSMUSG00000091937 ENSMUST00000171319 Gm3646 protein_coding Interval_161473 chr8 120617856 120618743 + 0 NA intron (ENSMUSG00000097919.1, intron 2 of 3) protein_coding-intron (ENSMUSG00000043687.15, intron 2 of 3) 19747 ENSMUSG00000097702.1 ENSMUSG00000097702 ENSMUST00000181041 Gm26739 lincRNA Interval_23403 chr11 22267204 22267848 + 0 NA intron (ENSMUSG00000042302.14, intron 2 of 4) protein_coding-intron (ENSMUSG00000042302.14, intron 1 of 23) 19269 ENSMUSG00000042302.14 ENSMUSG00000042302 ENSMUST00000137594 Ehbp1 protein_coding Interval_154298 chr8 14116596 14118524 + 0 NA intron (ENSMUSG00000047495.15, intron 1 of 14) protein_coding-intron (ENSMUSG00000047495.15, intron 1 of 15) -18750 ENSMUSG00000085371.1 ENSMUSG00000085371 ENSMUST00000128343 Gm3160 processed_pseudogene Interval_77039 chr17 85922171 85922904 + 0 NA intron (ENSMUSG00000117501.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000117501.1, intron 1 of 2) 6042 ENSMUSG00000117501.1 ENSMUSG00000117501 ENSMUST00000234707 Gm30117 lincRNA Interval_18968 chr10 93459928 93461363 + 0 NA TTS (ENSMUSG00000015889.8) protein_coding-TTS (ENSMUSG00000015889.8) -21826 ENSMUSG00000015889.8 ENSMUSG00000015889 ENSMUST00000217556 Lta4h protein_coding Interval_50001 chr13 119474074 119474290 + 0 NA exon (ENSMUSG00000025450.4, exon 2 of 2) processed_transcript-exon (ENSMUSG00000025450.4, exon 2 of 2) 2579 ENSMUSG00000025450.4 ENSMUSG00000025450 ENSMUST00000048965 Gm9752 processed_transcript Interval_23776 chr11 26120657 26121249 + 0 NA intron (ENSMUSG00000032985.15, intron 1 of 1) protein_coding-intron (ENSMUSG00000032985.15, intron 1 of 6) -81287 ENSMUSG00000099015.1 ENSMUSG00000099015 ENSMUST00000185114 Mir6372 miRNA Interval_37099 chr12 58193773 58194800 + 0 NA Intergenic Intergenic -17486 ENSMUSG00000035431.4 ENSMUSG00000035431 ENSMUST00000044299 Sstr1 protein_coding Interval_98881 chr2 155753304 155753741 + 0 NA exon (ENSMUSG00000027611.12, exon 2 of 4) protein_coding-exon (ENSMUSG00000027611.12, exon 2 of 4) 2372 ENSMUSG00000027611.12 ENSMUSG00000027611 ENSMUST00000143493 Procr protein_coding Interval_77325 chr17 88008913 88009600 + 0 NA promoter-TSS (ENSMUSG00000005371.15) protein_coding-promoter-TSS (ENSMUSG00000005371.15) 34161 ENSMUSG00000005370.4 ENSMUSG00000005370 ENSMUST00000234756 Msh6 protein_coding Interval_163033 chr9 14689257 14689853 + 0 NA Intergenic Intergenic -3968 ENSMUSG00000111483.1 ENSMUSG00000111483 ENSMUST00000216353 Gm18997 processed_pseudogene Interval_30507 chr11 94830098 94830303 + 0 NA Intergenic Intergenic -1270 ENSMUSG00000081007.1 ENSMUSG00000081007 ENSMUST00000120758 Gm11543 unprocessed_pseudogene Interval_143610 chr7 13132540 13132976 + 0 NA promoter-TSS (ENSMUSG00000070815.3) protein_coding-promoter-TSS (ENSMUSG00000070815.3) 7399 ENSMUSG00000070815.3 ENSMUSG00000070815 ENSMUST00000094827 Vmn1r87 protein_coding Interval_18824 chr10 91132960 91133171 + 0 NA Intergenic Intergenic -9043 ENSMUSG00000061904.12 ENSMUSG00000061904 ENSMUST00000172442 Slc25a3 protein_coding Interval_106531 chr3 97034438 97035267 + 0 NA intron (ENSMUSG00000057123.14, intron 1 of 1) protein_coding-intron (ENSMUSG00000057123.14, intron 1 of 1) -34081 ENSMUSG00000105385.1 ENSMUSG00000105385 ENSMUST00000200375 9230114J08Rik antisense Interval_15826 chr10 57608029 57608845 + 0 NA Intergenic Intergenic 7044 ENSMUSG00000093406.1 ENSMUSG00000093406 ENSMUST00000177147 Rpl48-ps1 processed_pseudogene Interval_65372 chr16 21970622 21970913 + 0 NA intron (ENSMUSG00000044626.13, intron 1 of 1) protein_coding-intron (ENSMUSG00000044626.13, intron 5 of 9) 5698 ENSMUSG00000044626.13 ENSMUSG00000044626 ENSMUST00000232120 Liph protein_coding Interval_19801 chr10 109262757 109263369 + 0 NA Intergenic Intergenic 63788 ENSMUSG00000105768.1 ENSMUSG00000105768 ENSMUST00000195954 Gm44495 miRNA Interval_69963 chr17 3541766 3542144 + 0 NA intron (ENSMUSG00000036983.7, intron 4 of 6) protein_coding-intron (ENSMUSG00000036983.7, intron 4 of 6) 9401 ENSMUSG00000091530.2 ENSMUSG00000091530 ENSMUST00000168560 Cldn20 protein_coding Interval_66518 chr16 34700117 34701033 + 0 NA intron (ENSMUSG00000022833.7, intron 5 of 8) protein_coding-intron (ENSMUSG00000022833.7, intron 5 of 12) 9865 ENSMUSG00000022833.7 ENSMUSG00000022833 ENSMUST00000232341 Ccdc14 protein_coding Interval_128375 chr5 112914375 112915031 + 0 NA exon (ENSMUSG00000042249.11, exon 21 of 21) protein_coding-exon (ENSMUSG00000042249.11, exon 21 of 21) -42207 ENSMUSG00000072720.9 ENSMUSG00000072720 ENSMUST00000183273 Myo18b protein_coding Interval_45222 chr13 53264864 53265313 + 0 NA intron (ENSMUSG00000021464.14, intron 1 of 8) protein_coding-intron (ENSMUSG00000021464.14, intron 1 of 8) 10570 ENSMUSG00000021464.14 ENSMUSG00000021464 ENSMUST00000149299 Ror2 protein_coding Interval_13948 chr10 24926091 24926311 + 0 NA intron (ENSMUSG00000019987.9, intron 1 of 1) protein_coding-intron (ENSMUSG00000019987.9, intron 1 of 7) 1236 ENSMUSG00000019987.9 ENSMUSG00000019987 ENSMUST00000220186 Arg1 protein_coding Interval_15664 chr10 53283647 53284056 + 0 NA TTS (ENSMUSG00000112709.1) antisense-TTS (ENSMUSG00000112709.1) 3570 ENSMUSG00000112709.1 ENSMUSG00000112709 ENSMUST00000219618 Gm19395 antisense Interval_24987 chr11 42572358 42572527 + 0 NA intron (ENSMUSG00000007653.12, intron 5 of 9) protein_coding-intron (ENSMUSG00000007653.12, intron 6 of 9) 151092 ENSMUSG00000007653.12 ENSMUSG00000007653 ENSMUST00000192403 Gabrb2 protein_coding Interval_568 chr1 7518462 7519437 + 0 NA TTS (ENSMUSG00000103067.1) lincRNA-TTS (ENSMUSG00000103067.1) 20981 ENSMUSG00000103067.1 ENSMUSG00000103067 ENSMUST00000194886 Gm30414 lincRNA Interval_59938 chr15 62106034 62107171 + 0 NA promoter-TSS (ENSMUSG00000099295.1) misc_RNA-promoter-TSS (ENSMUSG00000099295.1) -585 ENSMUSG00000099295.1 ENSMUSG00000099295 ENSMUST00000183721 Gm27718 misc_RNA Interval_117222 chr4 120715888 120716908 + 0 NA intron (ENSMUSG00000028631.7, intron 4 of 5) protein_coding-intron (ENSMUSG00000028631.7, intron 4 of 13) 32214 ENSMUSG00000028631.7 ENSMUSG00000028631 ENSMUST00000129478 Kcnq4 protein_coding Interval_105810 chr3 89454769 89455364 + 0 NA intron (ENSMUSG00000027952.16, intron 1 of 3) protein_coding-intron (ENSMUSG00000027952.16, intron 1 of 3) 525 ENSMUSG00000027952.16 ENSMUSG00000027952 ENSMUST00000184515 Pmvk protein_coding Interval_136596 chr6 56402692 56403310 + 0 NA intron (ENSMUSG00000004347.17, intron 4 of 19) protein_coding-intron (ENSMUSG00000004347.17, intron 3 of 18) 180845 ENSMUSG00000096087.1 ENSMUSG00000096087 ENSMUST00000104123 Gm24709 snoRNA Interval_8281 chr1 136912383 136912670 + 0 NA intron (ENSMUSG00000026398.14, intron 6 of 8) protein_coding-intron (ENSMUSG00000026398.14, intron 6 of 8) 36647 ENSMUSG00000026398.14 ENSMUSG00000026398 ENSMUST00000195428 Nr5a2 protein_coding Interval_107799 chr3 115348635 115348820 + 0 NA Intergenic Intergenic -42827 ENSMUSG00000088346.1 ENSMUSG00000088346 ENSMUST00000157721 Gm22337 snoRNA Interval_20000 chr10 111855404 111855888 + 0 NA intron (ENSMUSG00000112533.1, intron 5 of 5) lincRNA-intron (ENSMUSG00000112533.1, intron 5 of 5) 18730 ENSMUSG00000112533.1 ENSMUSG00000112533 ENSMUST00000220339 Gm20758 lincRNA Interval_117390 chr4 123399365 123399566 + 0 NA exon (ENSMUSG00000028649.21, exon 55 of 93) protein_coding-exon (ENSMUSG00000028649.21, exon 55 of 93) -36152 ENSMUSG00000081528.1 ENSMUSG00000081528 ENSMUST00000121747 Gm12924 processed_pseudogene Interval_87375 chr19 48033476 48033883 + 0 NA intron (ENSMUSG00000046585.9, intron 17 of 17) protein_coding-intron (ENSMUSG00000046585.9, intron 17 of 17) -83669 ENSMUSG00000117690.1 ENSMUSG00000117690 ENSMUST00000237618 Gm50430 lincRNA Interval_18770 chr10 90373626 90373919 + 0 NA intron (ENSMUSG00000058589.14, intron 12 of 25) protein_coding-intron (ENSMUSG00000058589.14, intron 12 of 17) -77138 ENSMUSG00000088221.1 ENSMUSG00000088221 ENSMUST00000157596 Gm22602 snRNA Interval_113746 chr4 58036619 58037602 + 0 NA Intergenic Intergenic -27986 ENSMUSG00000038709.15 ENSMUSG00000038709 ENSMUST00000239406 Txndc8 protein_coding Interval_149727 chr7 100964670 100965543 + 0 NA promoter-TSS (ENSMUSG00000048779.5) protein_coding-promoter-TSS (ENSMUSG00000048779.5) 9543 ENSMUSG00000048779.5 ENSMUSG00000048779 ENSMUST00000208653 P2ry6 protein_coding Interval_151586 chr7 124289799 124290926 + 0 NA TTS (ENSMUSG00000085899.1) sense_intronic-TTS (ENSMUSG00000085899.1) 103644 ENSMUSG00000085899.1 ENSMUSG00000085899 ENSMUST00000151884 Gm15338 sense_intronic Interval_16651 chr10 66839925 66840981 + 0 NA TTS (ENSMUSG00000112379.1) lincRNA-TTS (ENSMUSG00000112379.1) 2856 ENSMUSG00000112379.1 ENSMUSG00000112379 ENSMUST00000218961 Gm47900 lincRNA Interval_51398 chr14 27213109 27213562 + 0 NA intron (ENSMUSG00000021895.10, intron 4 of 13) protein_coding-intron (ENSMUSG00000021895.10, intron 4 of 13) 2938 ENSMUSG00000114349.1 ENSMUSG00000114349 ENSMUST00000225776 Gm7591 processed_pseudogene Interval_26588 chr11 59076325 59077024 + 0 NA exon (ENSMUSG00000061462.18, exon 33 of 90) protein_coding-exon (ENSMUSG00000061462.18, exon 33 of 90) 59701 ENSMUSG00000061462.18 ENSMUSG00000061462 ENSMUST00000133040 Obscn protein_coding Interval_12229 chr1 190992088 190992593 + 0 NA promoter-TSS (ENSMUSG00000104487.1) lincRNA-promoter-TSS (ENSMUSG00000104487.1) -352 ENSMUSG00000104487.1 ENSMUSG00000104487 ENSMUST00000194403 Gm31373 lincRNA Interval_31055 chr11 97905752 97906516 + 0 NA Intergenic Intergenic 21540 ENSMUSG00000086917.1 ENSMUSG00000086917 ENSMUST00000152825 Gm11630 lincRNA Interval_127015 chr5 99613256 99614204 + 0 NA intron (ENSMUSG00000089809.9, intron 1 of 2) protein_coding-intron (ENSMUSG00000089809.9, intron 1 of 1) -2297 ENSMUSG00000089627.1 ENSMUSG00000089627 ENSMUST00000162286 Gm16228 processed_pseudogene Interval_65432 chr16 22310599 22311425 + 0 NA Intergenic Intergenic 14874 ENSMUSG00000116857.2 ENSMUSG00000116857 ENSMUST00000231661 Gm49582 unprocessed_pseudogene Interval_151850 chr7 127110385 127112057 + 0 NA intron (ENSMUSG00000030674.5, intron 1 of 3) protein_coding-intron (ENSMUSG00000030674.5, intron 1 of 3) 10797 ENSMUSG00000030674.5 ENSMUSG00000030674 ENSMUST00000142403 Qprt protein_coding Interval_118422 chr4 131387079 131387418 + 0 NA Intergenic Intergenic -99949 ENSMUSG00000078531.3 ENSMUSG00000078531 ENSMUST00000149942 Gm831 lincRNA Interval_54311 chr14 67552585 67553233 + 0 NA Intergenic Intergenic -13941 ENSMUSG00000077647.1 ENSMUSG00000077647 ENSMUST00000104459 Gm24981 snoRNA Interval_96556 chr2 125664057 125664372 + 0 NA intron (ENSMUSG00000035109.14, intron 3 of 8) protein_coding-intron (ENSMUSG00000035109.14, intron 6 of 11) -8881 ENSMUSG00000091337.3 ENSMUSG00000091337 ENSMUST00000164756 Eid1 protein_coding Interval_148574 chr7 82774040 82775252 + 0 NA intron (ENSMUSG00000038563.14, intron 19 of 19) protein_coding-intron (ENSMUSG00000038563.14, intron 19 of 19) -19002 ENSMUSG00000086690.1 ENSMUSG00000086690 ENSMUST00000144828 4933406J10Rik antisense Interval_164792 chr9 41914590 41915913 + 0 NA Intergenic Intergenic -24647 ENSMUSG00000111726.1 ENSMUSG00000111726 ENSMUST00000217258 Gm40513 lincRNA Interval_73288 chr17 35991640 35992544 + 0 NA exon (ENSMUSG00000092604.1, exon 1 of 2) lincRNA-exon (ENSMUSG00000092604.1, exon 1 of 2) 225 ENSMUSG00000092604.1 ENSMUSG00000092604 ENSMUST00000172480 Gm20508 lincRNA Interval_156811 chr8 60678126 60678300 + 0 NA Intergenic Intergenic 23109 ENSMUSG00000031647.10 ENSMUSG00000031647 ENSMUST00000034066 Mfap3l protein_coding Interval_25895 chr11 52388117 52390585 + 0 NA TTS (ENSMUSG00000020402.11) protein_coding-TTS (ENSMUSG00000020402.11) -7077 ENSMUSG00000036275.13 ENSMUSG00000036275 ENSMUST00000136303 9530068E07Rik protein_coding Interval_172639 chrX 38784115 38784753 + 0 NA intron (ENSMUSG00000051361.7, intron 1 of 3) protein_coding-intron (ENSMUSG00000051361.7, intron 1 of 3) 21691 ENSMUSG00000082723.1 ENSMUSG00000082723 ENSMUST00000122159 Gm14564 processed_pseudogene Interval_71576 chr17 24644567 24647643 + 0 NA intron (ENSMUSG00000002504.15, intron 2 of 3) protein_coding-intron (ENSMUSG00000002504.15, intron 2 of 6) 3888 ENSMUSG00000002504.15 ENSMUSG00000002504 ENSMUST00000235042 Slc9a3r2 protein_coding Interval_139878 chr6 112287521 112288220 + 0 NA exon (ENSMUSG00000044574.5, exon 1 of 2) antisense-exon (ENSMUSG00000044574.5, exon 1 of 2) 966 ENSMUSG00000044574.5 ENSMUSG00000044574 ENSMUST00000053559 5031434C07Rik antisense Interval_169792 chr9 101438848 101439188 + 0 NA Intergenic Intergenic -2973 ENSMUSG00000101550.1 ENSMUSG00000101550 ENSMUST00000186831 Gm29385 processed_pseudogene Interval_116535 chr4 115095547 115097305 + 0 NA Intergenic Intergenic 7718 ENSMUSG00000028716.15 ENSMUSG00000028716 ENSMUST00000146578 Pdzk1ip1 protein_coding Interval_25740 chr11 51246327 51246752 + 0 NA Intergenic Intergenic 9725 ENSMUSG00000045942.13 ENSMUSG00000045942 ENSMUST00000231433 BC049762 protein_coding Interval_37666 chr12 70967750 70970238 + 0 NA Intergenic Intergenic -5725 ENSMUSG00000060073.9 ENSMUSG00000060073 ENSMUST00000162898 Psma3 protein_coding Interval_45725 chr13 57311207 57312037 + 0 NA Intergenic Intergenic 34944 ENSMUSG00000114411.1 ENSMUSG00000114411 ENSMUST00000224461 Gm48176 processed_pseudogene Interval_165506 chr9 48829872 48830653 + 0 NA intron (ENSMUSG00000066687.5, intron 2 of 6) protein_coding-intron (ENSMUSG00000066687.5, intron 2 of 6) 5960 ENSMUSG00000066687.5 ENSMUSG00000066687 ENSMUST00000216150 Zbtb16 protein_coding Interval_99939 chr2 166018143 166018336 + 0 NA intron (ENSMUSG00000027678.17, intron 1 of 22) protein_coding-intron (ENSMUSG00000027678.17, intron 1 of 22) -25722 ENSMUSG00000087351.1 ENSMUSG00000087351 ENSMUST00000146963 Gm11464 lincRNA Interval_7622 chr1 132558130 132558667 + 0 NA Intergenic Intergenic -15533 ENSMUSG00000053024.14 ENSMUSG00000053024 ENSMUST00000186530 Cntn2 protein_coding Interval_102393 chr3 23404251 23405680 + 0 NA Intergenic Intergenic -29648 ENSMUSG00000102214.1 ENSMUSG00000102214 ENSMUST00000191948 Gm37492 processed_pseudogene Interval_136273 chr6 52457669 52458540 + 0 NA Intergenic Intergenic -34347 ENSMUSG00000107895.1 ENSMUSG00000107895 ENSMUST00000203771 1700094M24Rik lincRNA Interval_155401 chr8 33300732 33300995 + 0 NA intron (ENSMUSG00000031583.13, intron 11 of 27) protein_coding-intron (ENSMUSG00000031583.13, intron 17 of 33) 29687 ENSMUSG00000031583.13 ENSMUSG00000031583 ENSMUST00000209293 Wrn protein_coding Interval_77704 chr17 94518226 94518938 + 0 NA Intergenic Intergenic -89603 ENSMUSG00000117476.1 ENSMUSG00000117476 ENSMUST00000234959 Gm9416 processed_pseudogene Interval_90808 chr2 32712110 32713916 + 0 NA promoter-TSS (ENSMUSG00000009555.16) protein_coding-promoter-TSS (ENSMUSG00000009555.16) -41 ENSMUSG00000105841.1 ENSMUSG00000105841 ENSMUST00000198213 Mir3960 miRNA Interval_89571 chr2 22920720 22921013 + 0 NA intron (ENSMUSG00000026784.14, intron 7 of 10) protein_coding-intron (ENSMUSG00000026784.14, intron 7 of 10) -7034 ENSMUSG00000081861.1 ENSMUSG00000081861 ENSMUST00000121960 Gm14441 processed_pseudogene Interval_91574 chr2 43722463 43723437 + 0 NA Intergenic Intergenic -25919 ENSMUSG00000049744.15 ENSMUSG00000049744 ENSMUST00000128630 Arhgap15 protein_coding Interval_111105 chr4 12106475 12107085 + 0 NA Intergenic Intergenic -7504 ENSMUSG00000083246.1 ENSMUSG00000083246 ENSMUST00000120647 Gm11839 processed_pseudogene Interval_34471 chr12 4504459 4504693 + 0 NA Intergenic Intergenic -4741 ENSMUSG00000111938.1 ENSMUSG00000111938 ENSMUST00000218374 2900045O20Rik lincRNA Interval_111869 chr4 32129938 32130878 + 0 NA Intergenic Intergenic -19378 ENSMUSG00000083872.1 ENSMUSG00000083872 ENSMUST00000119323 Gm11928 processed_pseudogene Interval_147330 chr7 65892155 65893038 + 0 NA intron (ENSMUSG00000030513.14, intron 1 of 19) protein_coding-intron (ENSMUSG00000030513.14, intron 1 of 21) -30604 ENSMUSG00000093405.1 ENSMUSG00000093405 ENSMUST00000176744 Gm20684 bidirectional_promoter_lncRNA Interval_89293 chr2 18926258 18926737 + 0 NA intron (ENSMUSG00000026737.12, intron 1 of 9) protein_coding-intron (ENSMUSG00000026737.12, intron 1 of 9) -20223 ENSMUSG00000026737.12 ENSMUSG00000026737 ENSMUST00000152981 Pip4k2a protein_coding Interval_77883 chr18 5014886 5015118 + 0 NA intron (ENSMUSG00000024236.18, intron 1 of 37) protein_coding-intron (ENSMUSG00000024236.18, intron 1 of 37) -20164 ENSMUSG00000024236.18 ENSMUSG00000024236 ENSMUST00000129543 Svil protein_coding Interval_112760 chr4 44663260 44664783 + 0 NA promoter-TSS (ENSMUSG00000086211.1) antisense-promoter-TSS (ENSMUSG00000086211.1) -394 ENSMUSG00000086211.1 ENSMUSG00000086211 ENSMUST00000140826 Gm12462 antisense Interval_61032 chr15 78876257 78878163 + 0 NA promoter-TSS (ENSMUSG00000033128.9) protein_coding-promoter-TSS (ENSMUSG00000033128.9) -6576 ENSMUSG00000033128.9 ENSMUSG00000033128 ENSMUST00000229353 Gga1 protein_coding Interval_43433 chr13 30888597 30888878 + 0 NA intron (ENSMUSG00000021357.14, intron 12 of 28) protein_coding-intron (ENSMUSG00000021357.14, intron 11 of 27) 59022 ENSMUSG00000076430.1 ENSMUSG00000076430 ENSMUST00000102943 Hus1b protein_coding Interval_139351 chr6 99242444 99242836 + 0 NA intron (ENSMUSG00000030067.17, intron 2 of 3) protein_coding-intron (ENSMUSG00000030067.17, intron 2 of 3) 145859 ENSMUSG00000093559.1 ENSMUSG00000093559 ENSMUST00000177278 Gm20705 sense_intronic Interval_146733 chr7 49786702 49787499 + 0 NA intron (ENSMUSG00000030505.17, intron 1 of 1) protein_coding-intron (ENSMUSG00000030505.17, intron 6 of 15) 2899 ENSMUSG00000030505.17 ENSMUSG00000030505 ENSMUST00000130907 Prmt3 protein_coding Interval_27296 chr11 65686996 65687308 + 0 NA Intergenic Intergenic 47680 ENSMUSG00000076460.1 ENSMUSG00000076460 ENSMUST00000103261 Mir744 miRNA Interval_163084 chr9 15119116 15121214 + 0 NA Intergenic Intergenic -8057 ENSMUSG00000031936.9 ENSMUSG00000031936 ENSMUST00000159985 Hephl1 protein_coding Interval_124599 chr5 52189703 52191283 + 0 NA promoter-TSS (ENSMUSG00000029169.11) protein_coding-promoter-TSS (ENSMUSG00000029169.11) -116 ENSMUSG00000029169.11 ENSMUSG00000029169 ENSMUST00000196230 Dhx15 protein_coding Interval_131929 chr5 140857322 140858775 + 0 NA Intergenic Intergenic -27891 ENSMUSG00000000149.10 ENSMUSG00000000149 ENSMUST00000198447 Gna12 protein_coding Interval_55226 chr14 79486890 79489406 + 0 NA intron (ENSMUSG00000036461.16, intron 1 of 8) protein_coding-intron (ENSMUSG00000036461.16, intron 1 of 8) -15911 ENSMUSG00000022023.6 ENSMUSG00000022023 ENSMUST00000228105 Wbp4 protein_coding Interval_140861 chr6 122436387 122437836 + 0 NA Intergenic Intergenic -19793 ENSMUSG00000055093.10 ENSMUSG00000055093 ENSMUST00000119780 Gm8430 processed_pseudogene Interval_69510 chr16 93950141 93950379 + 0 NA intron (ENSMUSG00000047109.13, intron 1 of 2) protein_coding-intron (ENSMUSG00000047109.13, intron 1 of 2) -7876 ENSMUSG00000047109.13 ENSMUSG00000047109 ENSMUST00000232406 Cldn14 protein_coding Interval_102766 chr3 30888616 30889676 + 0 NA intron (ENSMUSG00000037661.14, intron 2 of 2) protein_coding-intron (ENSMUSG00000037661.14, intron 2 of 3) 33153 ENSMUSG00000037661.14 ENSMUSG00000037661 ENSMUST00000147697 Gpr160 protein_coding Interval_81363 chr18 59174765 59176882 + 0 NA exon (ENSMUSG00000058152.8, exon 1 of 3) protein_coding-exon (ENSMUSG00000058152.8, exon 1 of 3) 370 ENSMUSG00000058152.8 ENSMUSG00000058152 ENSMUST00000080721 Chsy3 protein_coding Interval_100268 chr2 168065488 168067414 + 0 NA Intergenic Intergenic -1554 ENSMUSG00000092849.1 ENSMUSG00000092849 ENSMUST00000175108 Gm24327 miRNA Interval_4213 chr1 71645195 71646494 + 0 NA intron (ENSMUSG00000026193.15, intron 5 of 43) protein_coding-intron (ENSMUSG00000026193.15, intron 5 of 45) -7044 ENSMUSG00000073652.10 ENSMUSG00000073652 ENSMUST00000125934 Apol7d antisense Interval_22044 chr11 5971385 5973806 + 0 NA intron (ENSMUSG00000057897.14, intron 6 of 7) protein_coding-intron (ENSMUSG00000057897.14, intron 17 of 18) 11543 ENSMUSG00000057897.14 ENSMUSG00000057897 ENSMUST00000129098 Camk2b protein_coding Interval_47747 chr13 92242233 92242502 + 0 NA intron (ENSMUSG00000014850.15, intron 20 of 24) protein_coding-intron (ENSMUSG00000014850.15, intron 19 of 23) -63613 ENSMUSG00000100622.1 ENSMUSG00000100622 ENSMUST00000188317 Gm20379 protein_coding Interval_51152 chr14 24206853 24208076 + 0 NA intron (ENSMUSG00000021782.14, intron 1 of 31) protein_coding-intron (ENSMUSG00000021782.14, intron 1 of 30) 35927 ENSMUSG00000091079.1 ENSMUSG00000091079 ENSMUST00000163715 Gm17105 sense_intronic Interval_130654 chr5 129500761 129502342 + 0 NA promoter-TSS (ENSMUSG00000029439.14) protein_coding-promoter-TSS (ENSMUSG00000029439.14) -550 ENSMUSG00000104873.1 ENSMUSG00000104873 ENSMUST00000199847 Gm40332 TEC Interval_98699 chr2 154389601 154391245 + 0 NA intron (ENSMUSG00000027488.12, intron 2 of 7) protein_coding-intron (ENSMUSG00000027488.12, intron 2 of 7) 17557 ENSMUSG00000027488.12 ENSMUSG00000027488 ENSMUST00000133018 Snta1 protein_coding Interval_73086 chr17 34709169 34709405 + 0 NA intron (ENSMUSG00000033327.18, intron 24 of 43) protein_coding-intron (ENSMUSG00000033327.18, intron 21 of 40) 12965 ENSMUSG00000092471.1 ENSMUSG00000092471 ENSMUST00000172970 Cyp21a2-ps unprocessed_pseudogene Interval_141374 chr6 127778244 127778885 + 0 NA promoter-TSS (ENSMUSG00000107042.1) TEC-promoter-TSS (ENSMUSG00000107042.1) -243 ENSMUSG00000107042.1 ENSMUSG00000107042 ENSMUST00000201403 4921513H07Rik TEC Interval_98325 chr2 151512166 151513585 + 0 NA Intergenic Intergenic 10548 ENSMUSG00000027455.16 ENSMUSG00000027455 ENSMUST00000139229 Nsfl1c protein_coding Interval_26497 chr11 58160057 58160927 + 0 NA intron (ENSMUSG00000037275.14, intron 6 of 27) protein_coding-intron (ENSMUSG00000037275.14, intron 6 of 27) 8047 ENSMUSG00000037275.14 ENSMUSG00000037275 ENSMUST00000134953 Gemin5 protein_coding Interval_56746 chr14 121836492 121836827 + 0 NA Intergenic Intergenic 5645 ENSMUSG00000115443.1 ENSMUSG00000115443 ENSMUST00000228932 Gm9395 processed_pseudogene Interval_24385 chr11 32857486 32858156 + 0 NA Intergenic Intergenic 23119 ENSMUSG00000083303.1 ENSMUSG00000083303 ENSMUST00000121601 Gm12110 processed_pseudogene Interval_18428 chr10 85872584 85874446 + 0 NA intron (ENSMUSG00000001785.13, intron 1 of 10) protein_coding-intron (ENSMUSG00000001785.13, intron 1 of 14) 1631 ENSMUSG00000001785.13 ENSMUSG00000001785 ENSMUST00000219626 Pwp1 protein_coding Interval_158713 chr8 85498441 85499357 + 0 NA intron (ENSMUSG00000031700.11, intron 2 of 10) protein_coding-intron (ENSMUSG00000031700.11, intron 2 of 11) -20510 ENSMUSG00000031700.11 ENSMUSG00000031700 ENSMUST00000143846 Gpt2 protein_coding Interval_158961 chr8 88262660 88264091 + 0 NA Intergenic Intergenic 11403 ENSMUSG00000036779.12 ENSMUSG00000036779 ENSMUST00000154115 Tent4b protein_coding Interval_129764 chr5 122185365 122185718 + 0 NA Intergenic Intergenic 19944 ENSMUSG00000105742.1 ENSMUSG00000105742 ENSMUST00000199354 Gm42748 TEC Interval_140960 chr6 123122995 123123171 + 0 NA promoter-TSS (ENSMUSG00000030148.15) protein_coding-promoter-TSS (ENSMUSG00000030148.15) 395 ENSMUSG00000030148.15 ENSMUSG00000030148 ENSMUST00000032248 Clec4a2 protein_coding Interval_47181 chr13 77227375 77227752 + 0 NA intron (ENSMUSG00000071252.6, intron 1 of 3) protein_coding-intron (ENSMUSG00000071252.6, intron 4 of 19) 58185 ENSMUSG00000114256.1 ENSMUSG00000114256 ENSMUST00000225012 Gm29844 processed_pseudogene Interval_63262 chr15 99998391 99999369 + 0 NA intron (ENSMUSG00000023025.16, intron 10 of 15) protein_coding-intron (ENSMUSG00000023025.16, intron 10 of 15) -25593 ENSMUSG00000100084.2 ENSMUSG00000100084 ENSMUST00000188271 2310068J16Rik antisense Interval_30154 chr11 89955707 89956105 + 0 NA Intergenic Intergenic 46988 ENSMUSG00000020553.8 ENSMUSG00000020553 ENSMUST00000020864 Pctp protein_coding Interval_77459 chr17 89020530 89020759 + 0 NA intron (ENSMUSG00000032937.5, intron 4 of 9) protein_coding-intron (ENSMUSG00000032937.5, intron 4 of 9) -164022 ENSMUSG00000117566.1 ENSMUSG00000117566 ENSMUST00000234561 Gm9407 processed_pseudogene Interval_37839 chr12 72417708 72418012 + 0 NA Intergenic Intergenic -24175 ENSMUSG00000021090.16 ENSMUSG00000021090 ENSMUST00000221282 Lrrc9 protein_coding Interval_106001 chr3 90540961 90541633 + 0 NA exon (ENSMUSG00000074457.10, exon 1 of 3) protein_coding-intron (ENSMUSG00000074457.10, intron 1 of 2) 2009 ENSMUSG00000074457.10 ENSMUSG00000074457 ENSMUST00000098910 S100a16 protein_coding Interval_144211 chr7 19969605 19970380 + 0 NA intron (ENSMUSG00000070777.5, intron 2 of 11) protein_coding-intron (ENSMUSG00000070777.5, intron 2 of 11) -6291 ENSMUSG00000070777.5 ENSMUSG00000070777 ENSMUST00000207248 Ceacam20 protein_coding Interval_81590 chr18 61937631 61938719 + 0 NA Intergenic Intergenic -2955 ENSMUSG00000104035.1 ENSMUSG00000104035 ENSMUST00000194401 Gm37774 TEC Interval_44612 chr13 46703139 46703681 + 0 NA intron (ENSMUSG00000021374.10, intron 3 of 6) protein_coding-intron (ENSMUSG00000021374.10, intron 11 of 21) 4407 ENSMUSG00000021374.10 ENSMUSG00000021374 ENSMUST00000183299 Nup153 protein_coding Interval_115422 chr4 98812135 98812502 + 0 NA intron (ENSMUSG00000035407.8, intron 1 of 9) protein_coding-intron (ENSMUSG00000035407.8, intron 1 of 9) 8006 ENSMUSG00000073794.3 ENSMUSG00000073794 ENSMUST00000168045 I0C0044D17Rik protein_coding Interval_6949 chr1 121259994 121261271 + 0 NA Intergenic Intergenic 36356 ENSMUSG00000101700.1 ENSMUSG00000101700 ENSMUST00000191007 Gm29359 lincRNA Interval_110976 chr4 10990489 10990867 + 0 NA TTS (ENSMUSG00000049969.3) protein_coding-TTS (ENSMUSG00000049969.3) 17249 ENSMUSG00000049969.3 ENSMUSG00000049969 ENSMUST00000137891 Plekhf2 protein_coding Interval_146542 chr7 46735946 46736536 + 0 NA intron (ENSMUSG00000109624.1, intron 1 of 2) unprocessed_pseudogene-intron (ENSMUSG00000109624.1, intron 1 of 2) 430 ENSMUSG00000109624.1 ENSMUSG00000109624 ENSMUST00000211148 Saa-ps unprocessed_pseudogene Interval_79659 chr18 34300677 34301465 + 0 NA promoter-TSS (ENSMUSG00000005871.15) protein_coding-promoter-TSS (ENSMUSG00000005871.15) -30105 ENSMUSG00000014504.16 ENSMUSG00000014504 ENSMUST00000142010 Srp19 protein_coding Interval_107319 chr3 105777915 105778142 + 0 NA intron (ENSMUSG00000068798.10, intron 1 of 5) protein_coding-intron (ENSMUSG00000068798.10, intron 1 of 7) 6999 ENSMUSG00000106341.1 ENSMUSG00000106341 ENSMUST00000199706 Gm43330 sense_intronic Interval_105215 chr3 83915706 83916414 + 0 NA intron (ENSMUSG00000033767.14, intron 26 of 33) protein_coding-intron (ENSMUSG00000033767.14, intron 26 of 33) -8481 ENSMUSG00000033767.14 ENSMUSG00000033767 ENSMUST00000192811 Tmem131l protein_coding Interval_13210 chr10 13090302 13091695 + 0 NA promoter-TSS (ENSMUSG00000019817.18) protein_coding-promoter-TSS (ENSMUSG00000019817.18) 819 ENSMUSG00000098635.1 ENSMUSG00000098635 ENSMUST00000185060 Gm27741 misc_RNA Interval_114878 chr4 86658134 86658311 + 0 NA intron (ENSMUSG00000028494.12, intron 1 of 2) protein_coding-intron (ENSMUSG00000028494.12, intron 7 of 7) 461 ENSMUSG00000028494.12 ENSMUSG00000028494 ENSMUST00000134094 Plin2 protein_coding Interval_84149 chr19 7540311 7540559 + 0 NA TTS (ENSMUSG00000024759.14) protein_coding-TTS (ENSMUSG00000024759.14) -17042 ENSMUSG00000060675.13 ENSMUSG00000060675 ENSMUST00000136756 Plaat3 protein_coding Interval_151903 chr7 127443782 127444865 + 0 NA exon (ENSMUSG00000048921.11, exon 3 of 3) protein_coding-exon (ENSMUSG00000048921.11, exon 3 of 3) -4313 ENSMUSG00000086502.1 ENSMUSG00000086502 ENSMUST00000144796 B130055M24Rik processed_transcript Interval_120500 chr4 149020730 149021683 + 0 NA intron (ENSMUSG00000028975.16, intron 3 of 3) protein_coding-intron (ENSMUSG00000028975.16, intron 3 of 8) 60846 ENSMUSG00000086740.1 ENSMUSG00000086740 ENSMUST00000153443 Gm17029 antisense Interval_117184 chr4 120323380 120323989 + 0 NA Intergenic Intergenic 32334 ENSMUSG00000084929.1 ENSMUSG00000084929 ENSMUST00000152384 Foxo6os antisense Interval_43033 chr13 23368568 23369618 + 0 NA promoter-TSS (ENSMUSG00000046351.11) protein_coding-promoter-TSS (ENSMUSG00000046351.11) -5883 ENSMUSG00000046351.11 ENSMUSG00000046351 ENSMUST00000223795 Zfp322a protein_coding Interval_77930 chr18 5674279 5674799 + 0 NA intron (ENSMUSG00000024238.15, intron 2 of 5) protein_coding-intron (ENSMUSG00000024238.15, intron 1 of 7) 60066 ENSMUSG00000080543.1 ENSMUSG00000080543 ENSMUST00000116893 Gm22709 miRNA Interval_33995 chr11 119901292 119901643 + 0 NA Intergenic Intergenic -12548 ENSMUSG00000025371.12 ENSMUSG00000025371 ENSMUST00000137055 Chmp6 protein_coding Interval_150141 chr7 107341963 107342226 + 0 NA Intergenic Intergenic -22331 ENSMUSG00000076951.1 ENSMUSG00000076951 ENSMUST00000103763 Gm24932 miRNA Interval_70825 chr17 15139637 15140933 + 0 NA Intergenic Intergenic -11874 ENSMUSG00000116655.1 ENSMUSG00000116655 ENSMUST00000231330 Gm35455 lincRNA Interval_69000 chr16 90029066 90029881 + 0 NA intron (ENSMUSG00000002489.16, intron 2 of 11) protein_coding-intron (ENSMUSG00000002489.16, intron 2 of 11) -60510 ENSMUSG00000116536.1 ENSMUSG00000116536 ENSMUST00000232386 Gm2805 processed_pseudogene Interval_74123 chr17 46636825 46637494 + 0 NA intron (ENSMUSG00000003546.10, intron 6 of 15) protein_coding-intron (ENSMUSG00000003546.10, intron 6 of 15) 8863 ENSMUSG00000003546.10 ENSMUSG00000003546 ENSMUST00000003642 Klc4 protein_coding Interval_27247 chr11 64880904 64881409 + 0 NA Intergenic Intergenic -37403 ENSMUSG00000086490.1 ENSMUSG00000086490 ENSMUST00000122911 Gm12292 lincRNA Interval_52616 chr14 47986243 47987252 + 0 NA Intergenic Intergenic 7056 ENSMUSG00000115403.1 ENSMUSG00000115403 ENSMUST00000227382 Gm49304 lincRNA Interval_49053 chr13 107469318 107470112 + 0 NA promoter-TSS (ENSMUSG00000114780.1) lincRNA-promoter-TSS (ENSMUSG00000114780.1) -107 ENSMUSG00000114780.1 ENSMUSG00000114780 ENSMUST00000223617 AI197445 lincRNA Interval_66068 chr16 31405258 31405490 + 0 NA Intergenic Intergenic -8681 ENSMUSG00000116690.1 ENSMUSG00000116690 ENSMUST00000231871 Gm49736 lincRNA Interval_164215 chr9 32609102 32609382 + 0 NA Intergenic Intergenic -4210 ENSMUSG00000110844.1 ENSMUSG00000110844 ENSMUST00000214084 Gm47680 lincRNA Interval_11867 chr1 186573884 186574575 + 0 NA Intergenic Intergenic -15548 ENSMUSG00000103690.1 ENSMUSG00000103690 ENSMUST00000195454 A730004F24Rik lincRNA Interval_131010 chr5 134536277 134537117 + 0 NA intron (ENSMUSG00000063146.11, intron 1 of 16) protein_coding-intron (ENSMUSG00000063146.11, intron 1 of 15) -15360 ENSMUSG00000107090.1 ENSMUSG00000107090 ENSMUST00000200729 Gm42884 antisense Interval_114832 chr4 86030536 86031276 + 0 NA intron (ENSMUSG00000066113.16, intron 2 of 3) protein_coding-intron (ENSMUSG00000066113.16, intron 2 of 3) 12588 ENSMUSG00000064687.1 ENSMUSG00000064687 ENSMUST00000082753 Gm25811 snRNA Interval_167879 chr9 73330180 73332184 + 0 NA Intergenic Intergenic 138699 ENSMUSG00000098875.1 ENSMUSG00000098875 ENSMUST00000183507 Gm27211 lincRNA Interval_73026 chr17 34214029 34214867 + 0 NA promoter-TSS (ENSMUSG00000081512.1) macro_lncRNA-promoter-TSS (ENSMUSG00000081512.1) 11 ENSMUSG00000081512.1 ENSMUSG00000081512 ENSMUST00000121995 Gm15821 macro_lncRNA Interval_64 GL456212.1 122885 124094 + 0 NA NA NA NA NA Interval_125087 chr5 64364019 64364875 + 0 NA TTS (ENSMUSG00000105730.1) lincRNA-TTS (ENSMUSG00000105730.1) 3933 ENSMUSG00000105730.1 ENSMUSG00000105730 ENSMUST00000196357 Gm43838 lincRNA Interval_103383 chr3 41065077 41065767 + 0 NA TTS (ENSMUSG00000049940.7) protein_coding-TTS (ENSMUSG00000049940.7) 5248 ENSMUSG00000049940.7 ENSMUSG00000049940 ENSMUST00000124636 Pgrmc2 protein_coding Interval_45536 chr13 55705867 55706175 + 0 NA Intergenic Intergenic -11818 ENSMUSG00000021497.10 ENSMUSG00000021497 ENSMUST00000223649 Txndc15 protein_coding Interval_46863 chr13 72815095 72815394 + 0 NA intron (ENSMUSG00000113082.1, intron 1 of 3) lincRNA-intron (ENSMUSG00000113082.1, intron 1 of 3) 1519 ENSMUSG00000113082.1 ENSMUSG00000113082 ENSMUST00000223149 D730050B12Rik lincRNA Interval_149599 chr7 99960783 99960996 + 0 NA intron (ENSMUSG00000058761.5, intron 1 of 5) protein_coding-intron (ENSMUSG00000058761.5, intron 1 of 5) 4845 ENSMUSG00000058761.5 ENSMUSG00000058761 ENSMUST00000174264 Rnf169 protein_coding Interval_59152 chr15 44951242 44951501 + 0 NA Intergenic Intergenic 3267 ENSMUSG00000089589.1 ENSMUSG00000089589 ENSMUST00000158964 Gm23343 snoRNA Interval_152771 chr7 137426563 137427809 + 0 NA Intergenic Intergenic -10479 ENSMUSG00000031068.8 ENSMUSG00000031068 ENSMUST00000211598 Glrx3 protein_coding Interval_86910 chr19 44773640 44774280 + 0 NA exon (ENSMUSG00000092469.1, exon 3 of 3) antisense-exon (ENSMUSG00000092469.1, exon 3 of 3) 10552 ENSMUSG00000092469.1 ENSMUSG00000092469 ENSMUST00000173799 Gm20395 antisense Interval_49365 chr13 111482962 111483452 + 0 NA intron (ENSMUSG00000116016.1, intron 1 of 7) protein_coding-intron (ENSMUSG00000032745.18, intron 2 of 12) -29784 ENSMUSG00000032745.18 ENSMUSG00000032745 ENSMUST00000129638 Gpbp1 protein_coding Interval_34138 chr11 120850314 120853066 + 0 NA intron (ENSMUSG00000048445.6, intron 5 of 5) protein_coding-intron (ENSMUSG00000048445.6, intron 18 of 18) 20661 ENSMUSG00000087638.1 ENSMUSG00000087638 ENSMUST00000138256 Gm11773 antisense Interval_16903 chr10 69662122 69663093 + 0 NA intron (ENSMUSG00000069601.14, intron 2 of 2) protein_coding-intron (ENSMUSG00000069601.14, intron 1 of 16) -96246 ENSMUSG00000112729.1 ENSMUSG00000112729 ENSMUST00000220152 Gm46231 processed_pseudogene Interval_164609 chr9 40000712 40001166 + 0 NA exon (ENSMUSG00000059473.4, exon 1 of 1) protein_coding-exon (ENSMUSG00000059473.4, exon 1 of 1) 2526 ENSMUSG00000059473.4 ENSMUSG00000059473 ENSMUST00000080835 Olfr979 protein_coding Interval_104857 chr3 76053778 76054042 + 0 NA Intergenic Intergenic -12187 ENSMUSG00000104223.1 ENSMUSG00000104223 ENSMUST00000194986 Gm18428 processed_pseudogene Interval_151315 chr7 120940029 120940817 + 0 NA exon (ENSMUSG00000030880.14, exon 18 of 21) protein_coding-exon (ENSMUSG00000030880.14, exon 18 of 21) 5593 ENSMUSG00000030880.14 ENSMUSG00000030880 ENSMUST00000209014 Polr3e protein_coding Interval_76164 chr17 75811625 75811986 + 0 NA Intergenic Intergenic -22032 ENSMUSG00000117587.1 ENSMUSG00000117587 ENSMUST00000235034 Gm50099 processed_pseudogene Interval_148115 chr7 79315860 79316286 + 0 NA intron (ENSMUSG00000039202.12, intron 3 of 5) protein_coding-intron (ENSMUSG00000039202.12, intron 3 of 10) 17048 ENSMUSG00000108460.1 ENSMUSG00000108460 ENSMUST00000205557 Gm39041 TEC Interval_111342 chr4 19441334 19442394 + 0 NA intron (ENSMUSG00000056494.7, intron 13 of 17) protein_coding-intron (ENSMUSG00000056494.7, intron 13 of 17) 72915 ENSMUSG00000089090.1 ENSMUSG00000089090 ENSMUST00000158465 Gm25655 misc_RNA Interval_108760 chr3 131105876 131107954 + 0 NA Intergenic Intergenic 5175 ENSMUSG00000106086.1 ENSMUSG00000106086 ENSMUST00000196419 Lef1os1 antisense Interval_7763 chr1 133506032 133507358 + 0 NA Intergenic Intergenic -22784 ENSMUSG00000101004.1 ENSMUSG00000101004 ENSMUST00000188004 Gm8596 processed_pseudogene Interval_37975 chr12 73537650 73538370 + 0 NA Intergenic Intergenic 8382 ENSMUSG00000034435.6 ENSMUSG00000034435 ENSMUST00000042975 Tmem30b protein_coding Interval_59561 chr15 55282729 55282950 + 0 NA Intergenic Intergenic -20236 ENSMUSG00000095792.1 ENSMUSG00000095792 ENSMUST00000179457 Gm26296 snRNA Interval_90053 chr2 27552438 27553592 + 0 NA Intergenic Intergenic 12589 ENSMUSG00000085929.1 ENSMUSG00000085929 ENSMUST00000132898 Gm13421 processed_transcript Interval_86294 chr19 38441712 38443410 + 0 NA Intergenic Intergenic 30641 ENSMUSG00000088940.1 ENSMUSG00000088940 ENSMUST00000158315 Gm24930 misc_RNA Interval_104031 chr3 57535697 57536507 + 0 NA intron (ENSMUSG00000027803.14, intron 2 of 6) protein_coding-intron (ENSMUSG00000027803.14, intron 2 of 6) 7870 ENSMUSG00000083538.1 ENSMUSG00000083538 ENSMUST00000120831 Gm16016 processed_pseudogene Interval_141008 chr6 124329807 124330050 + 0 NA exon (ENSMUSG00000008845.9, exon 17 of 17) protein_coding-exon (ENSMUSG00000008845.9, exon 17 of 17) 9441 ENSMUSG00000008845.9 ENSMUSG00000008845 ENSMUST00000203210 Cd163 protein_coding Interval_128976 chr5 116419271 116419580 + 0 NA intron (ENSMUSG00000041548.4, intron 1 of 2) protein_coding-intron (ENSMUSG00000041548.4, intron 1 of 2) -3533 ENSMUSG00000041548.4 ENSMUSG00000041548 ENSMUST00000133335 Hspb8 protein_coding Interval_48607 chr13 100635381 100636252 + 0 NA intron (ENSMUSG00000021635.14, intron 6 of 17) protein_coding-intron (ENSMUSG00000021635.14, intron 5 of 16) 15186 ENSMUSG00000021635.14 ENSMUSG00000021635 ENSMUST00000225155 Rad17 protein_coding Interval_33690 chr11 117932160 117932610 + 0 NA Intergenic Intergenic 10480 ENSMUSG00000082562.1 ENSMUSG00000082562 ENSMUST00000121028 Gm11726 processed_pseudogene Interval_12385 chr1 192822628 192823720 + 0 NA Intergenic Intergenic -2047 ENSMUSG00000103874.1 ENSMUSG00000103874 ENSMUST00000195130 Gm38360 processed_pseudogene Interval_91965 chr2 52061152 52062374 + 0 NA Intergenic Intergenic 23754 ENSMUSG00000053475.5 ENSMUSG00000053475 ENSMUST00000065927 Tnfaip6 protein_coding Interval_4894 chr1 81643350 81644037 + 0 NA Intergenic Intergenic -86210 ENSMUSG00000101986.1 ENSMUSG00000101986 ENSMUST00000191337 Gm6198 processed_pseudogene Interval_38218 chr12 76427462 76428499 + 0 NA exon (ENSMUSG00000052221.8, exon 4 of 11) protein_coding-exon (ENSMUSG00000052221.8, exon 4 of 11) -7490 ENSMUSG00000077791.1 ENSMUSG00000077791 ENSMUST00000104603 Gm25563 snRNA Interval_2827 chr1 45990503 45990669 + 0 NA Intergenic Intergenic 9038 ENSMUSG00000070896.2 ENSMUSG00000070896 ENSMUST00000085632 Rpl23a-ps1 processed_pseudogene Interval_115190 chr4 94007295 94007694 + 0 NA Intergenic Intergenic -53879 ENSMUSG00000081685.1 ENSMUSG00000081685 ENSMUST00000118977 Gm12647 processed_pseudogene Interval_111015 chr4 11210205 11210704 + 0 NA intron (ENSMUSG00000040738.10, intron 22 of 25) protein_coding-intron (ENSMUSG00000040738.10, intron 23 of 27) 19100 ENSMUSG00000028212.16 ENSMUSG00000028212 ENSMUST00000149075 Ccne2 protein_coding Interval_137415 chr6 72089184 72091544 + 0 NA Intergenic Intergenic -2510 ENSMUSG00000108355.1 ENSMUSG00000108355 ENSMUST00000205475 Gm44604 processed_pseudogene Interval_56222 chr14 113503622 113504756 + 0 NA Intergenic Intergenic -13529 ENSMUSG00000086415.1 ENSMUSG00000086415 ENSMUST00000150617 Gm4487 processed_pseudogene Interval_89545 chr2 22293701 22294856 + 0 NA TTS (ENSMUSG00000025716.14) protein_coding-TTS (ENSMUSG00000025716.14) 53221 ENSMUSG00000025716.14 ENSMUSG00000025716 ENSMUST00000149423 Myo3a protein_coding Interval_107830 chr3 115974290 115974538 + 0 NA intron (ENSMUSG00000054414.4, intron 8 of 10) protein_coding-intron (ENSMUSG00000054414.4, intron 8 of 10) -5488 ENSMUSG00000089261.1 ENSMUSG00000089261 ENSMUST00000158636 Mir669n miRNA Interval_75818 chr17 71629312 71629567 + 0 NA intron (ENSMUSG00000041057.10, intron 4 of 18) protein_coding-intron (ENSMUSG00000041057.10, intron 3 of 17) -1842 ENSMUSG00000093289.1 ENSMUSG00000093289 ENSMUST00000175548 Snord92 snoRNA Interval_134251 chr6 23773325 23773726 + 0 NA intron (ENSMUSG00000017978.18, intron 2 of 29) protein_coding-intron (ENSMUSG00000017978.18, intron 1 of 29) 65612 ENSMUSG00000017978.18 ENSMUSG00000017978 ENSMUST00000115355 Cadps2 protein_coding Interval_30256 chr11 92176814 92177116 + 0 NA Intergenic Intergenic -152552 ENSMUSG00000093113.1 ENSMUSG00000093113 ENSMUST00000175372 Gm22702 miRNA Interval_59219 chr15 48977641 48978001 + 0 NA Intergenic Intergenic -71085 ENSMUSG00000089314.1 ENSMUSG00000089314 ENSMUST00000158689 Gm23185 snRNA Interval_154833 chr8 24051225 24051595 + 0 NA intron (ENSMUSG00000037492.16, intron 6 of 7) protein_coding-intron (ENSMUSG00000037492.16, intron 6 of 6) -122494 ENSMUSG00000053979.4 ENSMUSG00000053979 ENSMUST00000066740 A730045E13Rik lincRNA Interval_43820 chr13 37311253 37313198 + 0 NA Intergenic Intergenic -14241 ENSMUSG00000114508.1 ENSMUSG00000114508 ENSMUST00000224579 Gm47711 lincRNA Interval_165732 chr9 51978752 51979236 + 0 NA Intergenic Intergenic 24287 ENSMUSG00000098076.1 ENSMUSG00000098076 ENSMUST00000182467 Gm6981 processed_pseudogene Interval_8325 chr1 137345293 137345732 + 0 NA Intergenic Intergenic -19670 ENSMUSG00000102738.1 ENSMUSG00000102738 ENSMUST00000191810 1700006P03Rik TEC Interval_86705 chr19 42773343 42773530 + 0 NA intron (ENSMUSG00000025188.15, intron 1 of 15) protein_coding-intron (ENSMUSG00000025188.15, intron 2 of 18) 4827 ENSMUSG00000025188.15 ENSMUSG00000025188 ENSMUST00000161761 Hps1 protein_coding Interval_125631 chr5 72896734 72898152 + 0 NA Intergenic Intergenic -17225 ENSMUSG00000036087.18 ENSMUSG00000036087 ENSMUST00000145939 Slain2 protein_coding Interval_120953 chr4 151901540 151901900 + 0 NA Intergenic Intergenic 14694 ENSMUSG00000104142.1 ENSMUSG00000104142 ENSMUST00000191938 Gm37141 TEC Interval_28759 chr11 78146160 78147057 + 0 NA intron (ENSMUSG00000037750.16, intron 2 of 2) protein_coding-intron (ENSMUSG00000037750.16, intron 2 of 2) 2830 ENSMUSG00000060727.4 ENSMUSG00000060727 ENSMUST00000118132 Gm12571 processed_pseudogene Interval_80898 chr18 49998713 49998964 + 0 NA intron (ENSMUSG00000062210.13, intron 1 of 3) protein_coding-intron (ENSMUSG00000062210.13, intron 1 of 1) -47902 ENSMUSG00000062210.13 ENSMUSG00000062210 ENSMUST00000148159 Tnfaip8 protein_coding Interval_26458 chr11 57981002 57981484 + 0 NA Intergenic Intergenic -8109 ENSMUSG00000086666.1 ENSMUSG00000086666 ENSMUST00000132323 Gm12249 lincRNA Interval_102185 chr3 19275916 19277155 + 0 NA intron (ENSMUSG00000069094.12, intron 1 of 8) protein_coding-intron (ENSMUSG00000069094.12, intron 1 of 12) 34517 ENSMUSG00000069094.12 ENSMUSG00000069094 ENSMUST00000143120 Pde7a protein_coding Interval_115093 chr4 89575699 89575939 + 0 NA Intergenic Intergenic -103617 ENSMUSG00000043753.2 ENSMUSG00000043753 ENSMUST00000052478 Dmrta1 protein_coding Interval_132144 chr5 142938021 142938874 + 0 NA Intergenic Intergenic -21929 ENSMUSG00000029581.14 ENSMUSG00000029581 ENSMUST00000135293 Fscn1 protein_coding Interval_71455 chr17 23853280 23855404 + 0 NA exon (ENSMUSG00000089697.1, exon 2 of 2) antisense-exon (ENSMUSG00000089697.1, exon 2 of 2) 464 ENSMUSG00000048992.9 ENSMUSG00000048992 ENSMUST00000233370 Prss32 protein_coding Interval_99890 chr2 165641785 165644362 + 0 NA intron (ENSMUSG00000017897.18, intron 1 of 15) protein_coding-intron (ENSMUSG00000017897.18, intron 1 of 15) -12245 ENSMUSG00000017897.18 ENSMUSG00000017897 ENSMUST00000128280 Eya2 protein_coding Interval_99334 chr2 159163986 159164261 + 0 NA Intergenic Intergenic 24762 ENSMUSG00000077188.1 ENSMUSG00000077188 ENSMUST00000104000 Gm25090 snoRNA Interval_46706 chr13 69516451 69516691 + 0 NA intron (ENSMUSG00000034575.13, intron 1 of 12) protein_coding-intron (ENSMUSG00000034575.13, intron 1 of 12) 2571 ENSMUSG00000113486.1 ENSMUSG00000113486 ENSMUST00000221578 Gm48676 processed_pseudogene Interval_81150 chr18 54990578 54993162 + 0 NA TTS (ENSMUSG00000096948.2) antisense-TTS (ENSMUSG00000096948.2) 1605 ENSMUSG00000096948.2 ENSMUSG00000096948 ENSMUST00000181765 Gm4221 antisense Interval_62059 chr15 86152393 86153546 + 0 NA promoter-TSS (ENSMUSG00000035891.16) protein_coding-promoter-TSS (ENSMUSG00000035891.16) -521 ENSMUSG00000035891.16 ENSMUSG00000035891 ENSMUST00000156546 Cerk protein_coding Interval_156182 chr8 45706718 45706938 + 0 NA intron (ENSMUSG00000031626.18, intron 2 of 9) protein_coding-intron (ENSMUSG00000031626.18, intron 2 of 25) -72400 ENSMUSG00000110411.1 ENSMUSG00000110411 ENSMUST00000209931 Gm45457 TEC Interval_3497 chr1 58993103 58993950 + 0 NA intron (ENSMUSG00000026027.13, intron 11 of 12) protein_coding-intron (ENSMUSG00000026027.13, intron 10 of 11) 10013 ENSMUSG00000047383.8 ENSMUSG00000047383 ENSMUST00000054653 AC169382.1 lincRNA Interval_56284 chr14 116303020 116303445 + 0 NA intron (ENSMUSG00000022112.14, intron 7 of 7) protein_coding-intron (ENSMUSG00000022112.14, intron 7 of 7) -431954 ENSMUSG00000093497.1 ENSMUSG00000093497 ENSMUST00000176344 Gm20713 processed_transcript Interval_97581 chr2 140115683 140115919 + 0 NA Intergenic Intergenic -5399 ENSMUSG00000083110.1 ENSMUSG00000083110 ENSMUST00000117344 Gm14073 processed_pseudogene Interval_72915 chr17 33414141 33414927 + 0 NA Intergenic Intergenic -18362 ENSMUSG00000092519.2 ENSMUSG00000092519 ENSMUST00000174088 Actl9 protein_coding Interval_97008 chr2 130444576 130444789 + 0 NA TTS (ENSMUSG00000027411.17) protein_coding-TTS (ENSMUSG00000027411.17) 4360 ENSMUSG00000027411.17 ENSMUSG00000027411 ENSMUST00000134677 Vps16 protein_coding Interval_34756 chr12 9626518 9626804 + 0 NA Intergenic Intergenic 17156 ENSMUSG00000077259.1 ENSMUSG00000077259 ENSMUST00000104071 Gm23979 snoRNA Interval_174369 chrX 150486515 150486760 + 0 NA Intergenic Intergenic 22911 ENSMUSG00000081187.1 ENSMUSG00000081187 ENSMUST00000120793 3110067C02Rik processed_pseudogene Interval_86102 chr19 36677109 36677920 + 0 NA intron (ENSMUSG00000087579.7, intron 1 of 3) antisense-intron (ENSMUSG00000087579.7, intron 2 of 2) -18930 ENSMUSG00000087579.7 ENSMUSG00000087579 ENSMUST00000128603 Hectd2os antisense Interval_102107 chr3 17659737 17660921 + 0 NA Intergenic Intergenic -10359 ENSMUSG00000104242.1 ENSMUSG00000104242 ENSMUST00000195444 Gm38154 processed_pseudogene Interval_160476 chr8 109817258 109818180 + 0 NA intron (ENSMUSG00000031731.16, intron 2 of 23) protein_coding-intron (ENSMUSG00000031731.16, intron 2 of 22) -21576 ENSMUSG00000077549.1 ENSMUSG00000077549 ENSMUST00000104361 Snord71 snoRNA Interval_172770 chrX 48471948 48472218 + 0 NA Intergenic Intergenic -8951 ENSMUSG00000031103.12 ENSMUSG00000031103 ENSMUST00000140486 Elf4 protein_coding Interval_16253 chr10 61732209 61733045 + 0 NA intron (ENSMUSG00000020085.15, intron 2 of 2) protein_coding-intron (ENSMUSG00000020085.15, intron 6 of 9) 4479 ENSMUSG00000020085.15 ENSMUSG00000020085 ENSMUST00000140664 Aifm2 protein_coding Interval_56789 chr14 122104605 122105839 + 0 NA exon (ENSMUSG00000085615.2, exon 2 of 2) lincRNA-exon (ENSMUSG00000085615.2, exon 2 of 2) 1731 ENSMUSG00000085615.2 ENSMUSG00000085615 ENSMUST00000131416 A330035P11Rik lincRNA Interval_76425 chr17 80117455 80117669 + 0 NA Intergenic Intergenic 12625 ENSMUSG00000088276.1 ENSMUSG00000088276 ENSMUST00000157651 Gm23125 snRNA Interval_26385 chr11 57542649 57544044 + 0 NA Intergenic Intergenic 24660 ENSMUSG00000020522.13 ENSMUSG00000020522 ENSMUST00000108848 Mfap3 protein_coding Interval_107507 chr3 108185668 108187244 + 0 NA promoter-TSS (ENSMUSG00000050947.9) protein_coding-promoter-TSS (ENSMUSG00000050947.9) -1645 ENSMUSG00000050947.9 ENSMUSG00000050947 ENSMUST00000155782 Amigo1 protein_coding Interval_63241 chr15 99893671 99894174 + 0 NA Intergenic Intergenic 4634 ENSMUSG00000037438.6 ENSMUSG00000037438 ENSMUST00000038391 Uqcrh-ps1 processed_pseudogene Interval_109569 chr3 144534290 144534606 + 0 NA intron (ENSMUSG00000040151.9, intron 1 of 6) protein_coding-intron (ENSMUSG00000040151.9, intron 1 of 6) -10447 ENSMUSG00000106057.1 ENSMUSG00000106057 ENSMUST00000198100 Gm43560 sense_intronic Interval_8055 chr1 135471933 135473140 + 0 NA intron (ENSMUSG00000009418.16, intron 7 of 30) protein_coding-intron (ENSMUSG00000009418.16, intron 4 of 29) 8878 ENSMUSG00000102474.1 ENSMUSG00000102474 ENSMUST00000193434 2610012C04Rik TEC Interval_55702 chr14 99137915 99138142 + 0 NA intron (ENSMUSG00000022064.10, intron 8 of 13) protein_coding-intron (ENSMUSG00000022064.10, intron 8 of 17) 26351 ENSMUSG00000115071.1 ENSMUSG00000115071 ENSMUST00000226897 Gm49026 TEC Interval_174147 chrX 136290845 136291430 + 0 NA Intergenic Intergenic 13632 ENSMUSG00000065719.1 ENSMUSG00000065719 ENSMUST00000083785 n-R5s12 rRNA Interval_17152 chr10 72676361 72676607 + 0 NA Intergenic Intergenic 20240 ENSMUSG00000019923.14 ENSMUSG00000019923 ENSMUST00000219352 Zwint protein_coding Interval_89340 chr2 19519738 19520552 + 0 NA intron (ENSMUSG00000026734.9, intron 5 of 9) protein_coding-intron (ENSMUSG00000026734.9, intron 5 of 16) -10828 ENSMUSG00000084160.1 ENSMUSG00000084160 ENSMUST00000121928 Gm13345 processed_pseudogene Interval_151754 chr7 126438584 126438960 + 0 NA TTS (ENSMUSG00000030727.12) protein_coding-TTS (ENSMUSG00000030727.12) 8873 ENSMUSG00000030730.12 ENSMUSG00000030730 ENSMUST00000146973 Atp2a1 protein_coding Interval_168439 chr9 80391077 80392593 + 0 NA intron (ENSMUSG00000032343.15, intron 6 of 7) protein_coding-intron (ENSMUSG00000032343.15, intron 6 of 15) -59413 ENSMUSG00000111267.1 ENSMUSG00000111267 ENSMUST00000216673 Gm18292 processed_pseudogene Interval_79864 chr18 35629676 35629928 + 0 NA Intergenic Intergenic -2606 ENSMUSG00000024354.13 ENSMUSG00000024354 ENSMUST00000236196 Slc23a1 protein_coding Interval_972 chr1 13569118 13569373 + 0 NA intron (ENSMUSG00000025935.10, intron 10 of 10) protein_coding-intron (ENSMUSG00000025935.10, intron 10 of 10) 20630 ENSMUSG00000025935.10 ENSMUSG00000025935 ENSMUST00000188377 Tram1 protein_coding Interval_71798 chr17 26168159 26168418 + 0 NA intron (ENSMUSG00000024182.16, intron 1 of 2) protein_coding-intron (ENSMUSG00000024182.16, intron 2 of 10) -9284 ENSMUSG00000117374.1 ENSMUSG00000117374 ENSMUST00000233991 Gm49983 processed_pseudogene Interval_69344 chr16 92361449 92361658 + 0 NA Intergenic Intergenic -2679 ENSMUSG00000039639.7 ENSMUSG00000039639 ENSMUST00000166707 Kcne1 protein_coding Interval_135337 chr6 38427033 38427272 + 0 NA exon (ENSMUSG00000056832.14, exon 18 of 18) protein_coding-exon (ENSMUSG00000056832.14, exon 18 of 18) -13381 ENSMUSG00000038538.17 ENSMUSG00000038538 ENSMUST00000159447 Ubn2 protein_coding Interval_159512 chr8 95177556 95178843 + 0 NA intron (ENSMUSG00000031788.14, intron 1 of 4) protein_coding-intron (ENSMUSG00000031788.14, intron 1 of 4) 39889 ENSMUSG00000110475.1 ENSMUSG00000110475 ENSMUST00000212925 Gm31036 antisense Interval_165590 chr9 49975458 49976495 + 0 NA Intergenic Intergenic 21098 ENSMUSG00000111682.1 ENSMUSG00000111682 ENSMUST00000215094 Gm47543 lincRNA Interval_151000 chr7 117528471 117528812 + 0 NA intron (ENSMUSG00000030657.11, intron 1 of 1) protein_coding-intron (ENSMUSG00000030657.11, intron 2 of 11) 53149 ENSMUSG00000030657.11 ENSMUSG00000030657 ENSMUST00000161889 Xylt1 protein_coding Interval_112670 chr4 43964256 43966648 + 0 NA intron (ENSMUSG00000028480.14, intron 1 of 2) protein_coding-intron (ENSMUSG00000028480.14, intron 1 of 4) 7760 ENSMUSG00000028480.14 ENSMUSG00000028480 ENSMUST00000107855 Glipr2 protein_coding Interval_22386 chr11 9374399 9374949 + 0 NA intron (ENSMUSG00000004668.14, intron 30 of 61) protein_coding-intron (ENSMUSG00000004668.14, intron 30 of 61) 181223 ENSMUSG00000004668.14 ENSMUSG00000004668 ENSMUST00000151522 Abca13 protein_coding Interval_36094 chr12 35587176 35588025 + 0 NA intron (ENSMUSG00000113741.1, intron 5 of 5) lincRNA-intron (ENSMUSG00000113741.1, intron 5 of 5) -14944 ENSMUSG00000113548.1 ENSMUSG00000113548 ENSMUST00000223547 Gm34047 lincRNA Interval_79043 chr18 24140019 24142562 + 0 NA Intergenic Intergenic -19337 ENSMUSG00000047989.11 ENSMUSG00000047989 ENSMUST00000125169 Ino80c protein_coding Interval_130893 chr5 133666445 133667009 + 0 NA Intergenic Intergenic -68321 ENSMUSG00000105227.1 ENSMUSG00000105227 ENSMUST00000196125 Gm36667 lincRNA Interval_98523 chr2 152977563 152977856 + 0 NA intron (ENSMUSG00000074673.15, intron 2 of 9) protein_coding-intron (ENSMUSG00000074673.15, intron 3 of 14) 5421 ENSMUSG00000074673.15 ENSMUSG00000074673 ENSMUST00000150218 Ttll9 protein_coding Interval_154161 chr8 13151832 13152494 + 0 NA Intergenic Intergenic 11856 ENSMUSG00000031446.14 ENSMUSG00000031446 ENSMUST00000125646 Cul4a protein_coding Interval_25545 chr11 49689980 49690736 + 0 NA intron (ENSMUSG00000020362.13, intron 2 of 11) protein_coding-intron (ENSMUSG00000020362.13, intron 2 of 11) -7522 ENSMUSG00000081570.1 ENSMUSG00000081570 ENSMUST00000120146 Gm12192 processed_pseudogene Interval_5742 chr1 91380271 91381220 + 0 NA TTS (ENSMUSG00000026309.14) protein_coding-TTS (ENSMUSG00000026309.14) 10051 ENSMUSG00000047443.14 ENSMUSG00000047443 ENSMUST00000190998 Erfe protein_coding Interval_97627 chr2 141062132 141062705 + 0 NA intron (ENSMUSG00000068205.14, intron 5 of 16) protein_coding-intron (ENSMUSG00000068205.14, intron 5 of 17) -64862 ENSMUSG00000083274.1 ENSMUSG00000083274 ENSMUST00000117884 Zcchc9-ps processed_pseudogene Interval_29795 chr11 86872766 86873630 + 0 NA Intergenic Intergenic -72110 ENSMUSG00000018425.18 ENSMUSG00000018425 ENSMUST00000131798 Dhx40 protein_coding Interval_54105 chr14 65343117 65344346 + 0 NA Intergenic Intergenic -14803 ENSMUSG00000034522.10 ENSMUSG00000034522 ENSMUST00000225512 Zfp395 protein_coding Interval_98766 chr2 154809106 154809671 + 0 NA intron (ENSMUSG00000027593.15, intron 2 of 3) protein_coding-intron (ENSMUSG00000027593.15, intron 1 of 9) 18034 ENSMUSG00000027593.15 ENSMUSG00000027593 ENSMUST00000151578 Raly protein_coding Interval_134151 chr6 22002990 22003394 + 0 NA intron (ENSMUSG00000062980.15, intron 1 of 8) protein_coding-intron (ENSMUSG00000062980.15, intron 1 of 9) -22751 ENSMUSG00000062980.15 ENSMUSG00000062980 ENSMUST00000154734 Cped1 protein_coding Interval_124761 chr5 53707463 53708080 + 0 NA promoter-TSS (ENSMUSG00000029193.7) protein_coding-promoter-TSS (ENSMUSG00000029193.7) -211 ENSMUSG00000029193.7 ENSMUSG00000029193 ENSMUST00000202946 Cckar protein_coding Interval_76100 chr17 74967185 74968992 + 0 NA Intergenic Intergenic 17697 ENSMUSG00000117342.1 ENSMUSG00000117342 ENSMUST00000234138 Gm31818 processed_transcript Interval_88160 chr19 60073203 60074612 + 0 NA Intergenic Intergenic -5525 ENSMUSG00000118291.1 ENSMUSG00000118291 ENSMUST00000237917 Csf1r-ps processed_pseudogene Interval_126838 chr5 93748435 93749348 + 0 NA Intergenic Intergenic 10795 ENSMUSG00000107159.1 ENSMUSG00000107159 ENSMUST00000202043 Gm7919 unprocessed_pseudogene Interval_18051 chr10 81554253 81554584 + 0 NA Intergenic Intergenic -5070 ENSMUSG00000054452.10 ENSMUSG00000054452 ENSMUST00000218432 Tle5 protein_coding Interval_100603 chr2 170411081 170412347 + 0 NA intron (ENSMUSG00000013523.13, intron 3 of 4) protein_coding-intron (ENSMUSG00000013523.13, intron 3 of 12) 6533 ENSMUSG00000086970.1 ENSMUSG00000086970 ENSMUST00000133586 Bcas1os1 antisense Interval_106346 chr3 95520358 95522424 + 0 NA Intergenic Intergenic -5395 ENSMUSG00000038642.10 ENSMUSG00000038642 ENSMUST00000116304 Ctss protein_coding Interval_71261 chr17 21719998 21720256 + 0 NA intron (ENSMUSG00000067928.6, intron 4 of 5) protein_coding-intron (ENSMUSG00000067928.6, intron 4 of 5) 12386 ENSMUSG00000067928.6 ENSMUSG00000067928 ENSMUST00000073312 Zfp760 protein_coding Interval_93016 chr2 69609879 69610333 + 0 NA Intergenic Intergenic -37124 ENSMUSG00000063145.10 ENSMUSG00000063145 ENSMUST00000127806 Bbs5 protein_coding Interval_104159 chr3 59264838 59265079 + 0 NA exon (ENSMUSG00000056476.13, exon 35 of 43) protein_coding-exon (ENSMUSG00000056476.13, exon 35 of 43) -4828 ENSMUSG00000104550.1 ENSMUSG00000104550 ENSMUST00000199400 Gm43589 TEC Interval_50478 chr14 13933164 13934158 + 0 NA intron (ENSMUSG00000079357.9, intron 1 of 2) protein_coding-intron (ENSMUSG00000079357.9, intron 2 of 4) 767 ENSMUSG00000079357.9 ENSMUSG00000079357 ENSMUST00000238865 Gm11100 protein_coding Interval_110138 chr3 153658098 153658992 + 0 NA intron (ENSMUSG00000052544.9, intron 1 of 4) protein_coding-intron (ENSMUSG00000052544.9, intron 1 of 2) 36843 ENSMUSG00000089376.1 ENSMUSG00000089376 ENSMUST00000158751 Gm22136 misc_RNA Interval_129854 chr5 122761264 122761450 + 0 NA intron (ENSMUSG00000029471.13, intron 1 of 7) protein_coding-intron (ENSMUSG00000029471.13, intron 2 of 16) 17976 ENSMUSG00000029471.13 ENSMUSG00000029471 ENSMUST00000199599 Camkk2 protein_coding Interval_30239 chr11 91469515 91469868 + 0 NA Intergenic Intergenic 107867 ENSMUSG00000046755.5 ENSMUSG00000046755 ENSMUST00000061019 Kif2b protein_coding Interval_112195 chr4 35542128 35543109 + 0 NA Intergenic Intergenic 106404 ENSMUSG00000083851.1 ENSMUSG00000083851 ENSMUST00000117931 Gm12365 processed_pseudogene Interval_129034 chr5 116996658 116997197 + 0 NA Intergenic Intergenic -61885 ENSMUSG00000107327.1 ENSMUSG00000107327 ENSMUST00000201054 Gm7478 processed_pseudogene Interval_22270 chr11 8452667 8453384 + 0 NA intron (ENSMUSG00000020422.14, intron 21 of 30) protein_coding-intron (ENSMUSG00000020422.14, intron 21 of 30) -69172 ENSMUSG00000083553.1 ENSMUSG00000083553 ENSMUST00000117240 Gm11989 processed_pseudogene Interval_149160 chr7 95533112 95533668 + 0 NA Intergenic Intergenic 58444 ENSMUSG00000108429.1 ENSMUSG00000108429 ENSMUST00000206820 Gm44603 processed_pseudogene Interval_64564 chr16 13350605 13351847 + 0 NA intron (ENSMUSG00000009569.14, intron 3 of 16) protein_coding-intron (ENSMUSG00000009569.14, intron 3 of 16) -7195 ENSMUSG00000009569.14 ENSMUSG00000009569 ENSMUST00000149359 Mrtfb protein_coding Interval_76153 chr17 75617233 75617657 + 0 NA Intergenic Intergenic -43795 ENSMUSG00000117540.1 ENSMUSG00000117540 ENSMUST00000234396 Gm9360 processed_pseudogene Interval_19206 chr10 95489389 95490094 + 0 NA TTS (ENSMUSG00000062981.5) protein_coding-TTS (ENSMUSG00000062981.5) 10782 ENSMUSG00000062981.5 ENSMUSG00000062981 ENSMUST00000218996 Mrpl42 protein_coding Interval_17453 chr10 76961356 76962526 + 0 NA promoter-TSS (ENSMUSG00000001120.15) protein_coding-promoter-TSS (ENSMUSG00000001120.15) 21960 ENSMUSG00000102522.1 ENSMUSG00000102522 ENSMUST00000194879 Gm37782 TEC Interval_85982 chr19 34636949 34637533 + 0 NA intron (ENSMUSG00000067297.5, intron 1 of 2) protein_coding-intron (ENSMUSG00000067297.5, intron 1 of 2) 3502 ENSMUSG00000067297.5 ENSMUSG00000067297 ENSMUST00000087357 Ifit1bl2 protein_coding Interval_173318 chrX 78950861 78951230 + 0 NA Intergenic Intergenic -42405 ENSMUSG00000088446.1 ENSMUSG00000088446 ENSMUST00000157821 Gm23556 miRNA Interval_122233 chr5 20512602 20512842 + 0 NA intron (ENSMUSG00000040003.18, intron 6 of 15) protein_coding-intron (ENSMUSG00000040003.18, intron 10 of 22) -75874 ENSMUSG00000106240.1 ENSMUSG00000106240 ENSMUST00000196129 Gm3544 processed_pseudogene Interval_118531 chr4 132315627 132316731 + 0 NA intron (ENSMUSG00000028898.15, intron 3 of 5) protein_coding-intron (ENSMUSG00000028898.15, intron 6 of 8) 5488 ENSMUSG00000080615.1 ENSMUSG00000080615 ENSMUST00000116965 Snord99 snoRNA Interval_70930 chr17 16137035 16137577 + 0 NA Intergenic Intergenic -25845 ENSMUSG00000116839.1 ENSMUSG00000116839 ENSMUST00000232488 Gm49778 lincRNA Interval_134325 chr6 25148305 25148705 + 0 NA Intergenic Intergenic 51546 ENSMUSG00000089442.1 ENSMUSG00000089442 ENSMUST00000158817 Gm22529 snoRNA Interval_59979 chr15 62566146 62566355 + 0 NA Intergenic Intergenic -1725 ENSMUSG00000115862.1 ENSMUSG00000115862 ENSMUST00000230029 Gm41333 lincRNA Interval_142006 chr6 136499251 136500311 + 0 NA Intergenic Intergenic -6386 ENSMUSG00000030213.12 ENSMUSG00000030213 ENSMUST00000185332 Atf7ip protein_coding Interval_81255 chr18 56774148 56775216 + 0 NA intron (ENSMUSG00000087597.1, intron 1 of 4) protein_coding-intron (ENSMUSG00000032656.14, intron 4 of 4) 4965 ENSMUSG00000087597.1 ENSMUSG00000087597 ENSMUST00000128240 Gm15345 antisense Interval_15008 chr10 41883919 41884127 + 0 NA intron (ENSMUSG00000038332.13, intron 1 of 9) protein_coding-intron (ENSMUSG00000038332.13, intron 1 of 9) -14350 ENSMUSG00000038332.13 ENSMUSG00000038332 ENSMUST00000214835 Sesn1 protein_coding Interval_150233 chr7 108671839 108672604 + 0 NA Intergenic Intergenic 5749 ENSMUSG00000096209.4 ENSMUSG00000096209 ENSMUST00000076289 Olfr510 protein_coding Interval_172454 chrX 20657995 20659486 + 0 NA promoter-TSS (ENSMUSG00000001924.15) protein_coding-promoter-TSS (ENSMUSG00000001924.15) 319 ENSMUSG00000001924.15 ENSMUSG00000001924 ENSMUST00000136915 Uba1 protein_coding Interval_139794 chr6 108756168 108756671 + 0 NA Intergenic Intergenic -38478 ENSMUSG00000030105.8 ENSMUSG00000030105 ENSMUST00000204483 Arl8b protein_coding Interval_117241 chr4 120887523 120888511 + 0 NA intron (ENSMUSG00000032890.17, intron 3 of 5) protein_coding-intron (ENSMUSG00000032890.17, intron 5 of 7) 10148 ENSMUSG00000032890.17 ENSMUSG00000032890 ENSMUST00000171363 Rims3 protein_coding Interval_43521 chr13 32556604 32556816 + 0 NA Intergenic Intergenic -20295 ENSMUSG00000113449.1 ENSMUSG00000113449 ENSMUST00000221163 Gm48073 lincRNA Interval_80190 chr18 38126539 38127831 + 0 NA Intergenic Intergenic 76655 ENSMUSG00000051375.15 ENSMUSG00000051375 ENSMUST00000193828 Pcdh1 protein_coding Interval_107625 chr3 108964333 108965223 + 0 NA Intergenic Intergenic -24332 ENSMUSG00000051638.2 ENSMUSG00000051638 ENSMUST00000050914 Gm9857 antisense Interval_123814 chr5 35709373 35711198 + 0 NA intron (ENSMUSG00000036553.16, intron 10 of 17) protein_coding-intron (ENSMUSG00000036553.16, intron 10 of 17) -12270 ENSMUSG00000087703.1 ENSMUSG00000087703 ENSMUST00000135451 Gm15650 antisense Interval_64297 chr16 10316531 10317606 + 0 NA Intergenic Intergenic -3197 ENSMUSG00000022505.9 ENSMUSG00000022505 ENSMUST00000230141 Emp2 protein_coding Interval_50968 chr14 21398996 21400524 + 0 NA intron (ENSMUSG00000039197.10, intron 9 of 10) protein_coding-intron (ENSMUSG00000039197.10, intron 9 of 10) -50714 ENSMUSG00000088873.1 ENSMUSG00000088873 ENSMUST00000158248 Gm25864 snRNA Interval_134248 chr6 23674536 23675161 + 0 NA intron (ENSMUSG00000017978.18, intron 3 of 29) protein_coding-intron (ENSMUSG00000017978.18, intron 2 of 29) -19712 ENSMUSG00000078179.1 ENSMUSG00000078179 ENSMUST00000104979 Rnf148 protein_coding Interval_60208 chr15 68176982 68177305 + 0 NA intron (ENSMUSG00000022335.17, intron 7 of 13) protein_coding-intron (ENSMUSG00000022335.17, intron 7 of 15) 81644 ENSMUSG00000022335.17 ENSMUSG00000022335 ENSMUST00000161139 Zfat protein_coding Interval_9300 chr1 156035422 156036697 + 0 NA promoter-TSS (ENSMUSG00000026466.16) protein_coding-promoter-TSS (ENSMUSG00000026466.16) 287 ENSMUSG00000050565.16 ENSMUSG00000050565 ENSMUST00000125371 Tor1aip2 protein_coding Interval_102466 chr3 27045002 27045997 + 0 NA Intergenic Intergenic 2454 ENSMUSG00000102908.1 ENSMUSG00000102908 ENSMUST00000193221 Gm7558 processed_pseudogene Interval_95370 chr2 107021585 107021837 + 0 NA Intergenic Intergenic 10773 ENSMUSG00000082066.1 ENSMUSG00000082066 ENSMUST00000121901 Gm13904 processed_pseudogene Interval_124131 chr5 38560761 38562205 + 0 NA promoter-TSS (ENSMUSG00000005103.12) protein_coding-promoter-TSS (ENSMUSG00000005103.12) 1738 ENSMUSG00000005103.12 ENSMUSG00000005103 ENSMUST00000201330 Wdr1 protein_coding Interval_75120 chr17 63650834 63651460 + 0 NA Intergenic Intergenic -23193 ENSMUSG00000117060.1 ENSMUSG00000117060 ENSMUST00000232736 Gm7253 processed_pseudogene Interval_44199 chr13 41918782 41919002 + 0 NA Intergenic Intergenic 17241 ENSMUSG00000089035.1 ENSMUSG00000089035 ENSMUST00000158410 Gm22157 snRNA Interval_140869 chr6 122477849 122478255 + 0 NA intron (ENSMUSG00000040649.15, intron 1 of 1) protein_coding-intron (ENSMUSG00000040649.15, intron 1 of 5) 8387 ENSMUSG00000040649.15 ENSMUSG00000040649 ENSMUST00000204045 Rimklb protein_coding Interval_95603 chr2 112726029 112728031 + 0 NA intron (ENSMUSG00000057378.15, intron 64 of 103) protein_coding-intron (ENSMUSG00000057378.15, intron 64 of 102) -70482 ENSMUSG00000057378.15 ENSMUSG00000057378 ENSMUST00000208135 Ryr3 protein_coding Interval_156175 chr8 45580198 45580404 + 0 NA intron (ENSMUSG00000084954.2, intron 2 of 3) protein_coding-intron (ENSMUSG00000031626.18, intron 1 of 25) 1446 ENSMUSG00000077499.1 ENSMUSG00000077499 ENSMUST00000104311 Gm23604 snoRNA Interval_124241 chr5 41887957 41888172 + 0 NA Intergenic Intergenic -3278 ENSMUSG00000098264.1 ENSMUSG00000098264 ENSMUST00000183685 Mir6414 miRNA Interval_101446 chr2 181483638 181484176 + 0 NA Intergenic Intergenic -9299 ENSMUSG00000055882.8 ENSMUSG00000055882 ENSMUST00000069649 Abhd16b protein_coding Interval_164146 chr9 31978215 31978984 + 0 NA intron (ENSMUSG00000111771.1, intron 2 of 3) lincRNA-intron (ENSMUSG00000111771.1, intron 2 of 3) 26861 ENSMUSG00000111771.1 ENSMUSG00000111771 ENSMUST00000216368 Gm47465 lincRNA Interval_38267 chr12 76803262 76804345 + 0 NA intron (ENSMUSG00000021062.15, intron 2 of 6) protein_coding-intron (ENSMUSG00000021062.15, intron 2 of 6) -8306 ENSMUSG00000042808.8 ENSMUSG00000042808 ENSMUST00000220569 Gpx2 protein_coding Interval_155767 chr8 37084931 37085225 + 0 NA Intergenic Intergenic 5231 ENSMUSG00000109817.1 ENSMUSG00000109817 ENSMUST00000211556 Gm10683 TEC Interval_19731 chr10 108354631 108355269 + 0 NA intron (ENSMUSG00000035873.8, intron 1 of 4) protein_coding-intron (ENSMUSG00000035873.8, intron 2 of 6) -8715 ENSMUSG00000065653.1 ENSMUSG00000065653 ENSMUST00000083719 Gm23105 snoRNA Interval_86770 chr19 43738036 43738479 + 0 NA intron (ENSMUSG00000040018.9, intron 1 of 1) protein_coding-intron (ENSMUSG00000040018.9, intron 7 of 8) 1845 ENSMUSG00000040018.9 ENSMUSG00000040018 ENSMUST00000129242 Cox15 protein_coding Interval_46353 chr13 64161347 64162952 + 0 NA promoter-TSS (ENSMUSG00000021476.9) protein_coding-promoter-TSS (ENSMUSG00000021476.9) 9568 ENSMUSG00000114165.1 ENSMUSG00000114165 ENSMUST00000221450 Gm47513 TEC Interval_164773 chr9 41597504 41597856 + 0 NA intron (ENSMUSG00000074415.14, intron 1 of 1) processed_transcript-intron (ENSMUSG00000074415.14, intron 1 of 1) 15754 ENSMUSG00000093354.1 ENSMUSG00000093354 ENSMUST00000175613 Mir125b-1 miRNA Interval_158297 chr8 80915814 80916956 + 0 NA Intergenic Intergenic -17292 ENSMUSG00000098223.1 ENSMUSG00000098223 ENSMUST00000182279 Gm4891 processed_pseudogene Interval_88341 chr2 4152925 4153117 + 0 NA exon (ENSMUSG00000026657.17, exon 1 of 23) protein_coding-exon (ENSMUSG00000026657.17, exon 1 of 23) -11880 ENSMUSG00000084859.7 ENSMUSG00000084859 ENSMUST00000154360 1700080N15Rik antisense Interval_56204 chr14 112325015 112325916 + 0 NA Intergenic Intergenic 3710 ENSMUSG00000115581.1 ENSMUSG00000115581 ENSMUST00000228614 Gm20127 processed_pseudogene Interval_138898 chr6 93181328 93181930 + 0 NA intron (ENSMUSG00000097462.7, intron 2 of 9) antisense-intron (ENSMUSG00000097462.7, intron 2 of 9) -13312 ENSMUSG00000108256.1 ENSMUSG00000108256 ENSMUST00000203992 Gm43923 TEC Interval_18048 chr10 81536885 81537127 + 0 NA intron (ENSMUSG00000034781.5, intron 1 of 6) protein_coding-intron (ENSMUSG00000034781.5, intron 1 of 6) -4991 ENSMUSG00000034781.5 ENSMUSG00000034781 ENSMUST00000134354 Gna11 protein_coding Interval_140359 chr6 117176235 117176725 + 0 NA TTS (ENSMUSG00000061353.11) protein_coding-TTS (ENSMUSG00000061353.11) 7903 ENSMUSG00000061353.11 ENSMUSG00000061353 ENSMUST00000073043 Cxcl12 protein_coding Interval_55804 chr14 100318042 100318525 + 0 NA Intergenic Intergenic 32118 ENSMUSG00000110273.1 ENSMUSG00000110273 ENSMUST00000211525 Gm41231 lincRNA Interval_68782 chr16 86220956 86221168 + 0 NA Intergenic Intergenic -15109 ENSMUSG00000116799.1 ENSMUSG00000116799 ENSMUST00000231827 Gm32357 lincRNA Interval_171162 chr9 114853017 114855469 + 0 NA Intergenic Intergenic -10087 ENSMUSG00000041012.4 ENSMUSG00000041012 ENSMUST00000213929 Cmtm8 protein_coding Interval_104670 chr3 69274573 69275059 + 0 NA Intergenic Intergenic 45769 ENSMUSG00000091315.1 ENSMUSG00000091315 ENSMUST00000164501 Gm17214 processed_pseudogene Interval_164544 chr9 38253360 38254400 + 0 NA exon (ENSMUSG00000094778.3, exon 1 of 1) protein_coding-exon (ENSMUSG00000094778.3, exon 1 of 1) 1106 ENSMUSG00000094778.3 ENSMUSG00000094778 ENSMUST00000093865 Olfr143 protein_coding Interval_159425 chr8 94540187 94541063 + 0 NA intron (ENSMUSG00000034361.10, intron 1 of 1) protein_coding-intron (ENSMUSG00000034361.10, intron 1 of 15) -14889 ENSMUSG00000034361.10 ENSMUSG00000034361 ENSMUST00000156377 Cpne2 protein_coding Interval_36694 chr12 52115619 52117425 + 0 NA intron (ENSMUSG00000035142.18, intron 4 of 4) protein_coding-intron (ENSMUSG00000035142.18, intron 3 of 10) 37508 ENSMUSG00000112063.1 ENSMUSG00000112063 ENSMUST00000218420 Gm32220 processed_pseudogene Interval_70591 chr17 12168677 12169455 + 0 NA intron (ENSMUSG00000023827.8, intron 1 of 6) protein_coding-intron (ENSMUSG00000023827.8, intron 2 of 8) -20855 ENSMUSG00000063911.4 ENSMUSG00000063911 ENSMUST00000074412 Tdgf1-ps2 processed_pseudogene Interval_37842 chr12 72441702 72442695 + 0 NA promoter-TSS (ENSMUSG00000021090.16) protein_coding-promoter-TSS (ENSMUSG00000021090.16) 163 ENSMUSG00000021090.16 ENSMUSG00000021090 ENSMUST00000221282 Lrrc9 protein_coding Interval_59079 chr15 43247657 43248550 + 0 NA Intergenic Intergenic -23183 ENSMUSG00000087905.1 ENSMUSG00000087905 ENSMUST00000157280 Gm22037 misc_RNA Interval_171989 chr9 123238487 123238818 + 0 NA Intergenic Intergenic 22112 ENSMUSG00000054871.5 ENSMUSG00000054871 ENSMUST00000068140 Tmem158 protein_coding Interval_20219 chr10 116113012 116114392 + 0 NA promoter-TSS (ENSMUSG00000074734.3) protein_coding-promoter-TSS (ENSMUSG00000074734.3) 0 ENSMUSG00000074734.3 ENSMUSG00000074734 ENSMUST00000219858 Taf7l2 protein_coding Interval_148057 chr7 78912006 78912999 + 0 NA promoter-TSS (ENSMUSG00000039236.18) protein_coding-promoter-TSS (ENSMUSG00000039236.18) -1827 ENSMUSG00000039236.18 ENSMUSG00000039236 ENSMUST00000205981 Isg20 protein_coding Interval_153448 chr7 144860969 144861872 + 0 NA promoter-TSS (ENSMUSG00000050917.5) protein_coding-promoter-TSS (ENSMUSG00000050917.5) 14053 ENSMUSG00000050917.5 ENSMUSG00000050917 ENSMUST00000060336 Fgf4 protein_coding Interval_46740 chr13 69766735 69767600 + 0 NA Intergenic Intergenic 5465 ENSMUSG00000112957.1 ENSMUSG00000112957 ENSMUST00000222281 4930547H16Rik lincRNA Interval_49456 chr13 112196624 112197491 + 0 NA Intergenic Intergenic -22136 ENSMUSG00000104438.1 ENSMUSG00000104438 ENSMUST00000192356 Gm37427 TEC Interval_87726 chr19 55456203 55456976 + 0 NA intron (ENSMUSG00000024983.10, intron 5 of 7) protein_coding-intron (ENSMUSG00000024983.10, intron 5 of 7) 140262 ENSMUSG00000024983.10 ENSMUSG00000024983 ENSMUST00000224396 Vti1a protein_coding Interval_105723 chr3 88922614 88922857 + 0 NA TTS (ENSMUSG00000068921.14) protein_coding-TTS (ENSMUSG00000068921.14) -8832 ENSMUSG00000068922.14 ENSMUSG00000068922 ENSMUST00000128988 Msto1 protein_coding Interval_33355 chr11 116101816 116102313 + 0 NA Intergenic Intergenic 5019 ENSMUSG00000020773.11 ENSMUSG00000020773 ENSMUST00000133039 Trim47 protein_coding Interval_170151 chr9 105598820 105599837 + 0 NA Intergenic Intergenic -38567 ENSMUSG00000101597.2 ENSMUSG00000101597 ENSMUST00000187303 Gm5621 processed_pseudogene Interval_97044 chr2 130750270 130750948 + 0 NA intron (ENSMUSG00000027309.18, intron 20 of 20) protein_coding-intron (ENSMUSG00000027309.18, intron 20 of 36) -11109 ENSMUSG00000027309.18 ENSMUSG00000027309 ENSMUST00000146975 4930402H24Rik protein_coding Interval_160911 chr8 114933040 114934055 + 0 NA intron (ENSMUSG00000004637.15, intron 8 of 8) protein_coding-intron (ENSMUSG00000004637.15, intron 8 of 8) 119366 ENSMUSG00000088428.1 ENSMUSG00000088428 ENSMUST00000157803 Gm22556 rRNA Interval_59289 chr15 50799180 50799436 + 0 NA intron (ENSMUSG00000038679.16, intron 5 of 7) protein_coding-intron (ENSMUSG00000038679.16, intron 5 of 6) 89806 ENSMUSG00000084458.1 ENSMUSG00000084458 ENSMUST00000122509 Mir1907 miRNA Interval_154555 chr8 19423810 19424532 + 0 NA TTS (ENSMUSG00000082710.1) unprocessed_pseudogene-TTS (ENSMUSG00000082710.1) 1665 ENSMUSG00000082710.1 ENSMUSG00000082710 ENSMUST00000121373 Defa-ps14 unprocessed_pseudogene Interval_101746 chr3 9352481 9353994 + 0 NA Intergenic Intergenic -48938 ENSMUSG00000088229.1 ENSMUSG00000088229 ENSMUST00000157604 Gm22604 misc_RNA Interval_114916 chr4 86918244 86918829 + 0 NA exon (ENSMUSG00000038007.14, exon 6 of 6) protein_coding-exon (ENSMUSG00000038007.14, exon 6 of 6) -12155 ENSMUSG00000038007.14 ENSMUSG00000038007 ENSMUST00000135874 Acer2 protein_coding Interval_15356 chr10 45066316 45067868 + 0 NA promoter-TSS (ENSMUSG00000019849.11) protein_coding-promoter-TSS (ENSMUSG00000019849.11) -111 ENSMUSG00000019849.11 ENSMUSG00000019849 ENSMUST00000099858 Prep protein_coding Interval_172904 chrX 53055994 53057772 + 0 NA intron (ENSMUSG00000087365.7, intron 1 of 3) processed_transcript-intron (ENSMUSG00000087365.7, intron 1 of 3) 307 ENSMUSG00000087365.7 ENSMUSG00000087365 ENSMUST00000151099 C430049B03Rik processed_transcript Interval_7006 chr1 121771662 121772014 + 0 NA Intergenic Intergenic 65323 ENSMUSG00000102488.1 ENSMUSG00000102488 ENSMUST00000192952 Gm37920 TEC Interval_147966 chr7 75936128 75936538 + 0 NA Intergenic Intergenic -64491 ENSMUSG00000108495.1 ENSMUSG00000108495 ENSMUST00000206543 Gm45139 TEC Interval_48585 chr13 100516416 100516858 + 0 NA intron (ENSMUSG00000021638.12, intron 4 of 8) protein_coding-intron (ENSMUSG00000021638.12, intron 4 of 8) 35844 ENSMUSG00000021638.12 ENSMUSG00000021638 ENSMUST00000159515 Ocln protein_coding Interval_3792 chr1 63107128 63108274 + 0 NA intron (ENSMUSG00000040865.15, intron 1 of 11) protein_coding-intron (ENSMUSG00000040865.15, intron 1 of 10) -7039 ENSMUSG00000084799.7 ENSMUSG00000084799 ENSMUST00000188602 Ino80dos lincRNA Interval_35239 chr12 18673668 18674388 + 0 NA Intergenic Intergenic -7346 ENSMUSG00000113768.1 ENSMUSG00000113768 ENSMUST00000221499 Gm9237 unprocessed_pseudogene Interval_68754 chr16 85548513 85550566 + 0 NA intron (ENSMUSG00000041134.15, intron 1 of 2) protein_coding-intron (ENSMUSG00000041134.15, intron 1 of 3) 878 ENSMUSG00000041134.15 ENSMUSG00000041134 ENSMUST00000162621 Cyyr1 protein_coding Interval_36088 chr12 35503671 35504847 + 0 NA TTS (ENSMUSG00000019256.17) protein_coding-TTS (ENSMUSG00000019256.17) 22520 ENSMUSG00000019256.17 ENSMUSG00000019256 ENSMUST00000173414 Ahr protein_coding Interval_174338 chrX 145287208 145287696 + 0 NA Intergenic Intergenic -21926 ENSMUSG00000082085.1 ENSMUSG00000082085 ENSMUST00000120983 Gm6441 processed_pseudogene Interval_105671 chr3 88488336 88489257 + 0 NA intron (ENSMUSG00000028063.15, intron 1 of 9) protein_coding-intron (ENSMUSG00000028063.15, intron 1 of 11) -5932 ENSMUSG00000028063.15 ENSMUSG00000028063 ENSMUST00000149068 Lmna protein_coding Interval_8781 chr1 151034967 151035926 + 0 NA Intergenic Intergenic 26664 ENSMUSG00000096851.1 ENSMUSG00000096851 ENSMUST00000180118 Gm22756 snRNA Interval_126089 chr5 77299567 77299809 + 0 NA exon (ENSMUSG00000036285.10, exon 5 of 7) protein_coding-exon (ENSMUSG00000036285.10, exon 5 of 7) 10371 ENSMUSG00000036285.10 ENSMUSG00000036285 ENSMUST00000139435 Noa1 protein_coding Interval_156089 chr8 44028238 44028521 + 0 NA Intergenic Intergenic -10871 ENSMUSG00000080348.1 ENSMUSG00000080348 ENSMUST00000116698 Gm24591 miRNA Interval_32144 chr11 105558836 105559080 + 0 NA Intergenic Intergenic -38667 ENSMUSG00000080681.1 ENSMUSG00000080681 ENSMUST00000117031 Gm23990 miRNA Interval_58232 chr15 31248882 31249279 + 0 NA intron (ENSMUSG00000039168.15, intron 2 of 3) protein_coding-intron (ENSMUSG00000039168.15, intron 2 of 3) 24520 ENSMUSG00000039168.15 ENSMUSG00000039168 ENSMUST00000185618 Dap protein_coding Interval_119264 chr4 136550225 136550911 + 0 NA TTS (ENSMUSG00000036940.15) protein_coding-TTS (ENSMUSG00000036940.15) 1974 ENSMUSG00000036940.15 ENSMUSG00000036940 ENSMUST00000170979 Kdm1a protein_coding Interval_60612 chr15 75678267 75679675 + 0 NA promoter-TSS (ENSMUSG00000000934.9) protein_coding-promoter-TSS (ENSMUSG00000000934.9) -10237 ENSMUSG00000000934.9 ENSMUSG00000000934 ENSMUST00000230469 Top1mt protein_coding Interval_161421 chr8 120368727 120369650 + 0 NA intron (ENSMUSG00000031822.20, intron 2 of 2) protein_coding-intron (ENSMUSG00000092329.1, intron 1 of 15) 74361 ENSMUSG00000080549.2 ENSMUSG00000080549 ENSMUST00000116899 Gm22715 miRNA Interval_30962 chr11 97441625 97442041 + 0 NA intron (ENSMUSG00000049807.16, intron 2 of 2) protein_coding-intron (ENSMUSG00000049807.16, intron 1 of 23) 5548 ENSMUSG00000049807.16 ENSMUSG00000049807 ENSMUST00000093940 Arhgap23 protein_coding Interval_18849 chr10 91270136 91271817 + 0 NA Intergenic Intergenic -11632 ENSMUSG00000110847.1 ENSMUSG00000110847 ENSMUST00000215985 Gm18705 processed_pseudogene Interval_57652 chr15 13382904 13384022 + 0 NA Intergenic Intergenic 35393 ENSMUSG00000115347.1 ENSMUSG00000115347 ENSMUST00000227992 Gm8238 processed_pseudogene Interval_48093 chr13 95959715 95961188 + 0 NA TTS (ENSMUSG00000051111.16) protein_coding-TTS (ENSMUSG00000051111.16) 29775 ENSMUSG00000051111.16 ENSMUSG00000051111 ENSMUST00000220740 Sv2c protein_coding Interval_116250 chr4 109053798 109054114 + 0 NA promoter-TSS (ENSMUSG00000053510.12) protein_coding-promoter-TSS (ENSMUSG00000053510.12) 29750 ENSMUSG00000053510.12 ENSMUSG00000053510 ENSMUST00000125063 Nrd1 protein_coding Interval_36927 chr12 55411423 55411718 + 0 NA intron (ENSMUSG00000021024.14, intron 4 of 6) protein_coding-intron (ENSMUSG00000021024.14, intron 4 of 6) -15341 ENSMUSG00000059033.7 ENSMUSG00000059033 ENSMUST00000161190 Rpl18a-ps1 processed_pseudogene Interval_9150 chr1 154080482 154081710 + 0 NA promoter-TSS (ENSMUSG00000088669.1) snoRNA-promoter-TSS (ENSMUSG00000088669.1) -897 ENSMUSG00000088669.1 ENSMUSG00000088669 ENSMUST00000158044 Gm25336 snoRNA Interval_15120 chr10 42678495 42679542 + 0 NA promoter-TSS (ENSMUSG00000038280.12) protein_coding-promoter-TSS (ENSMUSG00000038280.12) 52 ENSMUSG00000038280.12 ENSMUSG00000038280 ENSMUST00000154048 Ostm1 protein_coding Interval_2535 chr1 40023314 40023565 + 0 NA exon (ENSMUSG00000026074.15, exon 29 of 31) protein_coding-exon (ENSMUSG00000026074.15, exon 29 of 31) 26929 ENSMUSG00000102985.1 ENSMUSG00000102985 ENSMUST00000193054 4930456G14Rik TEC Interval_147139 chr7 63765188 63765611 + 0 NA promoter-TSS (ENSMUSG00000108421.1) lincRNA-promoter-TSS (ENSMUSG00000108421.1) -475 ENSMUSG00000108421.1 ENSMUSG00000108421 ENSMUST00000206886 Gm44718 lincRNA Interval_33569 chr11 117265721 117267724 + 0 NA intron (ENSMUSG00000059248.13, intron 1 of 10) protein_coding-intron (ENSMUSG00000059248.13, intron 1 of 10) -3285 ENSMUSG00000086050.1 ENSMUSG00000086050 ENSMUST00000123882 Gm16045 antisense Interval_162909 chr9 12885928 12886343 + 0 NA Intergenic Intergenic 20702 ENSMUSG00000098228.1 ENSMUSG00000098228 ENSMUST00000182425 Gm21070 processed_pseudogene Interval_130781 chr5 130351066 130351593 + 0 NA Intergenic Intergenic 33301 ENSMUSG00000052014.6 ENSMUSG00000052014 ENSMUST00000063656 A330070K13Rik protein_coding Interval_170394 chr9 107634926 107635908 + 0 NA promoter-TSS (ENSMUSG00000032562.13) protein_coding-promoter-TSS (ENSMUSG00000032562.13) -2878 ENSMUSG00000102324.1 ENSMUSG00000102324 ENSMUST00000195284 Gm19721 TEC Interval_173074 chrX 70482147 70482630 + 0 NA Intergenic Intergenic -12209 ENSMUSG00000073139.9 ENSMUSG00000073139 ENSMUST00000134954 Tmem185a protein_coding Interval_118479 chr4 131918548 131922303 + 0 NA promoter-TSS (ENSMUSG00000085667.1) processed_transcript-promoter-TSS (ENSMUSG00000085667.1) -775 ENSMUSG00000070720.4 ENSMUSG00000070720 ENSMUST00000094666 Tmem200b protein_coding Interval_26598 chr11 59124024 59124730 + 0 NA intron (ENSMUSG00000061462.18, intron 10 of 114) protein_coding-intron (ENSMUSG00000061462.18, intron 10 of 89) 11998 ENSMUSG00000061462.18 ENSMUSG00000061462 ENSMUST00000133040 Obscn protein_coding Interval_89276 chr2 18734225 18734637 + 0 NA intron (ENSMUSG00000037708.16, intron 7 of 10) protein_coding-intron (ENSMUSG00000037708.16, intron 7 of 10) -24553 ENSMUSG00000081139.1 ENSMUSG00000081139 ENSMUST00000119424 Gm13333 processed_pseudogene Interval_142396 chr6 141488755 141489215 + 0 NA exon (ENSMUSG00000041741.10, exon 13 of 16) protein_coding-exon (ENSMUSG00000041741.10, exon 13 of 16) -35414 ENSMUSG00000030235.17 ENSMUSG00000030235 ENSMUST00000203755 Slco1c1 protein_coding Interval_144298 chr7 24364727 24365425 + 0 NA Intergenic Intergenic 15880 ENSMUSG00000030484.5 ENSMUSG00000030484 ENSMUST00000032683 Lypd5 protein_coding Interval_99463 chr2 161511359 161512593 + 0 NA Intergenic Intergenic 2036 ENSMUSG00000100943.1 ENSMUSG00000100943 ENSMUST00000188874 Gm29229 processed_transcript Interval_156903 chr8 61564601 61564870 + 0 NA intron (ENSMUSG00000058056.16, intron 10 of 21) protein_coding-intron (ENSMUSG00000058056.16, intron 10 of 19) -48835 ENSMUSG00000058056.16 ENSMUSG00000058056 ENSMUST00000123523 Palld protein_coding Interval_21675 chr11 3625544 3625984 + 0 NA promoter-TSS (ENSMUSG00000084211.1) processed_pseudogene-promoter-TSS (ENSMUSG00000084211.1) 84 ENSMUSG00000084211.1 ENSMUSG00000084211 ENSMUST00000117640 Gm11949 processed_pseudogene Interval_49894 chr13 117958509 117959414 + 0 NA intron (ENSMUSG00000021730.8, intron 6 of 7) protein_coding-intron (ENSMUSG00000021730.8, intron 6 of 7) -77653 ENSMUSG00000088155.1 ENSMUSG00000088155 ENSMUST00000157530 Gm26349 snoRNA Interval_86789 chr19 43898182 43898796 + 0 NA intron (ENSMUSG00000025195.9, intron 4 of 15) protein_coding-intron (ENSMUSG00000025195.9, intron 3 of 14) -18721 ENSMUSG00000025195.9 ENSMUSG00000025195 ENSMUST00000212157 Dnmbp protein_coding Interval_67484 chr16 49725842 49727014 + 0 NA intron (ENSMUSG00000032965.11, intron 5 of 10) protein_coding-intron (ENSMUSG00000032965.11, intron 5 of 10) 27124 ENSMUSG00000032965.11 ENSMUSG00000032965 ENSMUST00000140914 Ift57 protein_coding Interval_8714 chr1 149795294 149795575 + 0 NA Intergenic Intergenic -46096 ENSMUSG00000077516.1 ENSMUSG00000077516 ENSMUST00000104328 n-R5s219 rRNA Interval_83170 chr18 82525858 82526615 + 0 NA intron (ENSMUSG00000041607.17, intron 3 of 5) protein_coding-intron (ENSMUSG00000041607.17, intron 3 of 6) -2215 ENSMUSG00000061684.6 ENSMUSG00000061684 ENSMUST00000130005 Rpl21-ps8 processed_pseudogene Interval_81444 chr18 60787054 60787758 + 0 NA Intergenic Intergenic -8012 ENSMUSG00000080779.1 ENSMUSG00000080779 ENSMUST00000118088 Gm8731 processed_pseudogene Interval_112509 chr4 41693099 41694909 + 0 NA intron (ENSMUSG00000028444.17, intron 1 of 9) protein_coding-intron (ENSMUSG00000028444.17, intron 1 of 4) 19530 ENSMUSG00000036114.3 ENSMUSG00000036114 ENSMUST00000038434 Rpp25l protein_coding Interval_111536 chr4 22649236 22649581 + 0 NA Intergenic Intergenic -54649 ENSMUSG00000080762.1 ENSMUSG00000080762 ENSMUST00000121885 Gm11879 processed_pseudogene Interval_128855 chr5 115619383 115620296 + 0 NA intron (ENSMUSG00000041638.18, intron 19 of 21) protein_coding-intron (ENSMUSG00000041638.18, intron 55 of 57) 11977 ENSMUSG00000107121.1 ENSMUSG00000107121 ENSMUST00000201728 1110006O24Rik lincRNA Interval_122112 chr5 17184488 17184695 + 0 NA Intergenic Intergenic 43343 ENSMUSG00000091273.1 ENSMUSG00000091273 ENSMUST00000166114 Gm6673 unprocessed_pseudogene Interval_96910 chr2 129413537 129413911 + 0 NA Intergenic Intergenic -34328 ENSMUSG00000081888.1 ENSMUSG00000081888 ENSMUST00000122326 Spcs2-ps unprocessed_pseudogene Interval_37716 chr12 71349831 71351269 + 0 NA Intergenic Intergenic -4891 ENSMUSG00000113441.1 ENSMUSG00000113441 ENSMUST00000221650 Gm40438 lincRNA Interval_32810 chr11 110961863 110962109 + 0 NA Intergenic Intergenic -6047 ENSMUSG00000051497.15 ENSMUSG00000051497 ENSMUST00000178798 Kcnj16 protein_coding Interval_16001 chr10 60028392 60028617 + 0 NA intron (ENSMUSG00000044475.14, intron 5 of 10) protein_coding-intron (ENSMUSG00000044475.14, intron 5 of 10) 25699 ENSMUSG00000044475.14 ENSMUSG00000044475 ENSMUST00000164083 Ascc1 protein_coding Interval_133358 chr6 3646875 3647068 + 0 NA Intergenic Intergenic 58920 ENSMUSG00000001376.17 ENSMUSG00000001376 ENSMUST00000184411 Vps50 protein_coding Interval_27250 chr11 64915473 64916086 + 0 NA Intergenic Intergenic -63293 ENSMUSG00000020549.14 ENSMUSG00000020549 ENSMUST00000128693 Elac2 protein_coding Interval_100376 chr2 168707648 168708100 + 0 NA intron (ENSMUSG00000027546.15, intron 2 of 27) protein_coding-intron (ENSMUSG00000027546.15, intron 2 of 27) 34090 ENSMUSG00000027546.15 ENSMUSG00000027546 ENSMUST00000156555 Atp9a protein_coding Interval_52005 chr14 34562232 34562777 + 0 NA intron (ENSMUSG00000021798.14, intron 9 of 9) protein_coding-intron (ENSMUSG00000021798.14, intron 7 of 13) 25977 ENSMUSG00000021798.14 ENSMUSG00000021798 ENSMUST00000226226 Ldb3 protein_coding Interval_43697 chr13 35179745 35180578 + 0 NA promoter-TSS (ENSMUSG00000102099.2) processed_transcript-promoter-TSS (ENSMUSG00000102099.2) 9812 ENSMUSG00000102099.2 ENSMUSG00000102099 ENSMUST00000221261 1700011B04Rik processed_transcript Interval_68007 chr16 63161661 63162023 + 0 NA Intergenic Intergenic 50152 ENSMUSG00000116612.1 ENSMUSG00000116612 ENSMUST00000231788 Gm49621 processed_pseudogene Interval_39836 chr12 98916728 98917041 + 0 NA Intergenic Intergenic -15400 ENSMUSG00000051166.10 ENSMUSG00000051166 ENSMUST00000222128 Eml5 protein_coding Interval_19217 chr10 95563426 95565841 + 0 NA promoter-TSS (ENSMUSG00000020029.6) protein_coding-promoter-TSS (ENSMUSG00000020029.6) -487 ENSMUSG00000020029.6 ENSMUSG00000020029 ENSMUST00000020217 Nudt4 protein_coding Interval_120295 chr4 145254174 145254958 + 0 NA Intergenic Intergenic -7696 ENSMUSG00000028599.10 ENSMUSG00000028599 ENSMUST00000143055 Tnfrsf1b protein_coding Interval_151437 chr7 122437429 122437642 + 0 NA intron (ENSMUSG00000052889.11, intron 2 of 2) protein_coding-intron (ENSMUSG00000052889.11, intron 3 of 16) -4488 ENSMUSG00000084230.1 ENSMUSG00000084230 ENSMUST00000118119 Gm14388 processed_pseudogene Interval_163607 chr9 22494129 22495996 + 0 NA intron (ENSMUSG00000035919.16, intron 3 of 22) protein_coding-intron (ENSMUSG00000035919.16, intron 2 of 21) -14616 ENSMUSG00000090067.1 ENSMUSG00000090067 ENSMUST00000160362 Gm2976 processed_pseudogene Interval_28610 chr11 77135851 77136169 + 0 NA intron (ENSMUSG00000050944.14, intron 1 of 11) protein_coding-intron (ENSMUSG00000050944.14, intron 5 of 17) -13618 ENSMUSG00000102038.1 ENSMUSG00000102038 ENSMUST00000119288 Gm12345 processed_pseudogene Interval_82799 chr18 77107048 77108537 + 0 NA intron (ENSMUSG00000025423.16, intron 3 of 14) protein_coding-intron (ENSMUSG00000025423.16, intron 3 of 12) 42547 ENSMUSG00000025423.16 ENSMUSG00000025423 ENSMUST00000168882 Pias2 protein_coding Interval_24389 chr11 32889215 32890075 + 0 NA Intergenic Intergenic -8705 ENSMUSG00000083303.1 ENSMUSG00000083303 ENSMUST00000121601 Gm12110 processed_pseudogene Interval_121077 chr4 152663195 152663860 + 0 NA Intergenic Intergenic 14476 ENSMUSG00000083078.1 ENSMUSG00000083078 ENSMUST00000118685 Gm13172 processed_pseudogene Interval_165094 chr9 44528324 44529358 + 0 NA intron (ENSMUSG00000047880.15, intron 2 of 3) protein_coding-intron (ENSMUSG00000047880.15, intron 1 of 2) -2259 ENSMUSG00000047880.15 ENSMUSG00000047880 ENSMUST00000213357 Cxcr5 protein_coding Interval_69054 chr16 90322884 90323647 + 0 NA intron (ENSMUSG00000116600.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000116600.1, intron 1 of 1) 8393 ENSMUSG00000116600.1 ENSMUSG00000116600 ENSMUST00000232142 Gm49707 lincRNA Interval_117218 chr4 120680886 120683361 + 0 NA Intergenic Intergenic 15551 ENSMUSG00000070803.6 ENSMUSG00000070803 ENSMUST00000094814 Cited4 protein_coding Interval_70558 chr17 12021077 12021656 + 0 NA intron (ENSMUSG00000023826.16, intron 9 of 10) protein_coding-intron (ENSMUSG00000023826.16, intron 10 of 11) -97963 ENSMUSG00000023827.8 ENSMUSG00000023827 ENSMUST00000167905 Agpat4 protein_coding Interval_12604 chr10 3851805 3853564 + 0 NA intron (ENSMUSG00000040624.18, intron 1 of 15) protein_coding-intron (ENSMUSG00000040624.18, intron 2 of 16) 16923 ENSMUSG00000082123.1 ENSMUSG00000082123 ENSMUST00000117631 Gm16149 processed_pseudogene Interval_19430 chr10 99190614 99191193 + 0 NA intron (ENSMUSG00000019952.15, intron 1 of 2) protein_coding-intron (ENSMUSG00000019952.15, intron 10 of 11) -6293 ENSMUSG00000089994.1 ENSMUSG00000089994 ENSMUST00000160182 Gm16239 antisense Interval_93936 chr2 79566490 79567846 + 0 NA Intergenic Intergenic -72014 ENSMUSG00000027007.16 ENSMUSG00000027007 ENSMUST00000133266 Itprid2 protein_coding Interval_20818 chr10 121266664 121267868 + 0 NA exon (ENSMUSG00000052302.6, exon 12 of 12) protein_coding-exon (ENSMUSG00000052302.6, exon 12 of 12) 24264 ENSMUSG00000112871.1 ENSMUSG00000112871 ENSMUST00000219186 Gm35404 lincRNA Interval_173095 chrX 71555472 71557165 + 0 NA promoter-TSS (ENSMUSG00000015217.11) protein_coding-promoter-TSS (ENSMUSG00000015217.11) -1465 ENSMUSG00000015217.11 ENSMUSG00000015217 ENSMUST00000132145 Hmgb3 protein_coding Interval_29306 chr11 82818517 82819785 + 0 NA intron (ENSMUSG00000020696.18, intron 1 of 6) protein_coding-intron (ENSMUSG00000020696.18, intron 1 of 5) 26941 ENSMUSG00000020696.18 ENSMUSG00000020696 ENSMUST00000126660 Rffl protein_coding Interval_155218 chr8 27840544 27840996 + 0 NA Intergenic Intergenic -79659 ENSMUSG00000064882.1 ENSMUSG00000064882 ENSMUST00000082948 Gm24202 snRNA Interval_93960 chr2 80160156 80160383 + 0 NA Intergenic Intergenic 28339 ENSMUSG00000083519.1 ENSMUSG00000083519 ENSMUST00000121276 Gm13674 processed_pseudogene Interval_53007 chr14 53416093 53416445 + 0 NA Intergenic Intergenic -2080 ENSMUSG00000076826.5 ENSMUSG00000076826 ENSMUST00000103637 Trav4-2 TR_V_gene Interval_117846 chr4 126590814 126591092 + 0 NA intron (ENSMUSG00000042489.15, intron 22 of 25) protein_coding-intron (ENSMUSG00000042489.15, intron 22 of 25) -6144 ENSMUSG00000081319.1 ENSMUSG00000081319 ENSMUST00000121439 Gm12936 processed_pseudogene Interval_90101 chr2 28031477 28032690 + 0 NA intron (ENSMUSG00000026837.16, intron 4 of 5) protein_coding-intron (ENSMUSG00000026837.16, intron 64 of 65) -1646 ENSMUSG00000086560.1 ENSMUSG00000086560 ENSMUST00000123129 Gm13372 processed_transcript Interval_69089 chr16 90545158 90546282 + 0 NA Intergenic Intergenic 4889 ENSMUSG00000116753.1 ENSMUSG00000116753 ENSMUST00000232652 Gm36001 lincRNA Interval_163266 chr9 20433656 20433966 + 0 NA exon (ENSMUSG00000063108.15, exon 10 of 10) protein_coding-exon (ENSMUSG00000063108.15, exon 10 of 10) 20636 ENSMUSG00000110811.1 ENSMUSG00000110811 ENSMUST00000213612 Gm48729 processed_pseudogene Interval_100784 chr2 172509801 172510697 + 0 NA promoter-TSS (ENSMUSG00000081344.5) processed_pseudogene-promoter-TSS (ENSMUSG00000081344.5) -558 ENSMUSG00000081344.5 ENSMUSG00000081344 ENSMUST00000121320 Gm14303 processed_pseudogene Interval_111455 chr4 21766597 21767499 + 0 NA promoter-TSS (ENSMUSG00000040455.17) protein_coding-promoter-TSS (ENSMUSG00000040455.17) -108 ENSMUSG00000040455.17 ENSMUSG00000040455 ENSMUST00000148647 Usp45 protein_coding Interval_165617 chr9 50439965 50440705 + 0 NA Intergenic Intergenic -54192 ENSMUSG00000032068.14 ENSMUSG00000032068 ENSMUST00000188047 Plet1 protein_coding Interval_93827 chr2 77264076 77264356 + 0 NA intron (ENSMUSG00000042272.17, intron 1 of 11) protein_coding-intron (ENSMUSG00000042272.17, intron 1 of 17) -7793 ENSMUSG00000084087.1 ENSMUSG00000084087 ENSMUST00000117729 Gm13650 processed_pseudogene Interval_171389 chr9 117291370 117292779 + 0 NA intron (ENSMUSG00000039607.17, intron 3 of 15) protein_coding-intron (ENSMUSG00000039607.17, intron 2 of 14) 39538 ENSMUSG00000079669.2 ENSMUSG00000079669 ENSMUST00000172075 Gm17396 processed_transcript Interval_93344 chr2 72130976 72131186 + 0 NA intron (ENSMUSG00000085439.1, intron 1 of 3) protein_coding-intron (ENSMUSG00000049044.16, intron 1 of 27) 17715 ENSMUSG00000085439.1 ENSMUSG00000085439 ENSMUST00000126462 Rapgef4os1 antisense Interval_169431 chr9 97189991 97190955 + 0 NA Intergenic Intergenic 11294 ENSMUSG00000101502.1 ENSMUSG00000101502 ENSMUST00000190579 Rpl7a-ps10 processed_pseudogene Interval_74184 chr17 46942415 46942852 + 0 NA intron (ENSMUSG00000023977.15, intron 38 of 44) protein_coding-intron (ENSMUSG00000023977.15, intron 40 of 46) 9522 ENSMUSG00000023977.15 ENSMUSG00000023977 ENSMUST00000225599 Ubr2 protein_coding Interval_102529 chr3 27516617 27517196 + 0 NA intron (ENSMUSG00000039286.12, intron 3 of 4) protein_coding-intron (ENSMUSG00000039286.12, intron 6 of 25) -29735 ENSMUSG00000106625.1 ENSMUSG00000106625 ENSMUST00000198723 Gm43344 TEC Interval_153847 chr8 9793055 9793579 + 0 NA Intergenic Intergenic -6877 ENSMUSG00000109183.1 ENSMUSG00000109183 ENSMUST00000209080 Gm44761 lincRNA Interval_118355 chr4 130848843 130849125 + 0 NA Intergenic Intergenic 8896 ENSMUSG00000077381.1 ENSMUSG00000077381 ENSMUST00000104193 Gm22660 snoRNA Interval_30270 chr11 92594524 92594991 + 0 NA Intergenic Intergenic 176216 ENSMUSG00000081363.2 ENSMUSG00000081363 ENSMUST00000118237 Gm11500 processed_pseudogene Interval_91563 chr2 43371265 43371467 + 0 NA Intergenic Intergenic 148032 ENSMUSG00000080994.2 ENSMUSG00000080994 ENSMUST00000119418 Gm13464 processed_pseudogene Interval_97178 chr2 132044201 132045460 + 0 NA Intergenic Intergenic -23657 ENSMUSG00000027339.15 ENSMUSG00000027339 ENSMUST00000140791 Rassf2 protein_coding Interval_75205 chr17 64661490 64662049 + 0 NA intron (ENSMUSG00000024085.13, intron 6 of 21) protein_coding-intron (ENSMUSG00000024085.13, intron 6 of 21) -51850 ENSMUSG00000024085.13 ENSMUSG00000024085 ENSMUST00000169668 Man2a1 protein_coding Interval_107903 chr3 116701744 116701930 + 0 NA intron (ENSMUSG00000027957.13, intron 1 of 5) protein_coding-intron (ENSMUSG00000027957.13, intron 1 of 7) 10375 ENSMUSG00000027957.13 ENSMUSG00000027957 ENSMUST00000169530 Slc35a3 protein_coding Interval_38949 chr12 84040696 84040970 + 0 NA exon (ENSMUSG00000097762.1, exon 3 of 3) antisense-exon (ENSMUSG00000097762.1, exon 3 of 3) -1716 ENSMUSG00000052392.5 ENSMUSG00000052392 ENSMUST00000221860 Acot4 protein_coding Interval_106535 chr3 97071342 97072970 + 0 NA intron (ENSMUSG00000104766.1, intron 1 of 3) antisense-intron (ENSMUSG00000104766.1, intron 1 of 3) 20629 ENSMUSG00000104766.1 ENSMUSG00000104766 ENSMUST00000197696 4930573H18Rik antisense Interval_138812 chr6 92122592 92122804 + 0 NA intron (ENSMUSG00000005893.14, intron 2 of 14) protein_coding-intron (ENSMUSG00000005893.14, intron 1 of 14) -15918 ENSMUSG00000005893.14 ENSMUSG00000005893 ENSMUST00000204349 Nr2c2 protein_coding Interval_147468 chr7 67532520 67533094 + 0 NA intron (ENSMUSG00000030556.13, intron 3 of 3) protein_coding-intron (ENSMUSG00000030556.13, intron 7 of 9) 37896 ENSMUSG00000087926.1 ENSMUSG00000087926 ENSMUST00000157301 Gm23233 snoRNA Interval_172136 chrX 7898367 7899855 + 0 NA promoter-TSS (ENSMUSG00000031158.11) protein_coding-promoter-TSS (ENSMUSG00000031158.11) -111 ENSMUSG00000031157.10 ENSMUSG00000031157 ENSMUST00000154552 Pqbp1 protein_coding Interval_25573 chr11 49871730 49872308 + 0 NA intron (ENSMUSG00000020366.18, intron 5 of 11) protein_coding-intron (ENSMUSG00000020366.18, intron 5 of 11) -23712 ENSMUSG00000080487.1 ENSMUSG00000080487 ENSMUST00000116837 Gm23492 miRNA Interval_55057 chr14 77561960 77562338 + 0 NA intron (ENSMUSG00000022012.9, intron 6 of 6) protein_coding-intron (ENSMUSG00000022012.9, intron 7 of 18) -10707 ENSMUSG00000022012.9 ENSMUSG00000022012 ENSMUST00000228845 Enox1 protein_coding Interval_174723 chrX 164069536 164070288 + 0 NA TTS (ENSMUSG00000040749.11) protein_coding-TTS (ENSMUSG00000040749.11) 6581 ENSMUSG00000040749.11 ENSMUSG00000040749 ENSMUST00000134272 Siah1b protein_coding Interval_4861 chr1 80339682 80341596 + 0 NA promoter-TSS (ENSMUSG00000004364.14) protein_coding-promoter-TSS (ENSMUSG00000004364.14) -332 ENSMUSG00000004364.14 ENSMUSG00000004364 ENSMUST00000167293 Cul3 protein_coding Interval_48305 chr13 97963806 97966147 + 0 NA intron (ENSMUSG00000021662.11, intron 13 of 27) protein_coding-intron (ENSMUSG00000021662.11, intron 21 of 35) 51441 ENSMUSG00000021662.11 ENSMUSG00000021662 ENSMUST00000224866 Arhgef28 protein_coding Interval_119165 chr4 135941087 135941521 + 0 NA TTS (ENSMUSG00000028673.10) protein_coding-TTS (ENSMUSG00000028673.10) -7226 ENSMUSG00000028672.13 ENSMUSG00000028672 ENSMUST00000135644 Hmgcl protein_coding Interval_122863 chr5 26441020 26441668 + 0 NA Intergenic Intergenic 51945 ENSMUSG00000029044.9 ENSMUSG00000029044 ENSMUST00000196508 4930584F24Rik lincRNA Interval_26007 chr11 53445649 53446483 + 0 NA Intergenic Intergenic 11044 ENSMUSG00000072963.2 ENSMUSG00000072963 ENSMUST00000084653 Gm10447 bidirectional_promoter_lncRNA Interval_138621 chr6 90513312 90513698 + 0 NA exon (ENSMUSG00000108271.1, exon 1 of 1) TEC-exon (ENSMUSG00000108271.1, exon 1 of 1) 203 ENSMUSG00000108271.1 ENSMUSG00000108271 ENSMUST00000204492 Gm44236 TEC Interval_44921 chr13 49801124 49801326 + 0 NA Intergenic Intergenic -2235 ENSMUSG00000114073.1 ENSMUSG00000114073 ENSMUST00000220663 Gm30302 protein_coding Interval_20669 chr10 120136048 120136679 + 0 NA Intergenic Intergenic -23498 ENSMUSG00000020228.11 ENSMUSG00000020228 ENSMUST00000154501 Helb protein_coding Interval_151793 chr7 126700910 126701825 + 0 NA promoter-TSS (ENSMUSG00000030707.15) protein_coding-promoter-TSS (ENSMUSG00000030707.15) 1807 ENSMUSG00000030707.15 ENSMUSG00000030707 ENSMUST00000126193 Coro1a protein_coding Interval_52589 chr14 47742775 47743746 + 0 NA Intergenic Intergenic 14233 ENSMUSG00000115719.1 ENSMUSG00000115719 ENSMUST00000226197 4930538L07Rik lincRNA Interval_29223 chr11 81670394 81670749 + 0 NA intron (ENSMUSG00000020704.13, intron 1 of 9) protein_coding-intron (ENSMUSG00000020704.13, intron 1 of 9) 83210 ENSMUSG00000087534.1 ENSMUSG00000087534 ENSMUST00000156193 Gm11418 antisense Interval_141392 chr6 127965205 127966128 + 0 NA TTS (ENSMUSG00000030352.15) protein_coding-TTS (ENSMUSG00000030352.15) -20827 ENSMUSG00000085813.1 ENSMUSG00000085813 ENSMUST00000132657 Gm15870 antisense Interval_48822 chr13 103730283 103730745 + 0 NA Intergenic Intergenic -22895 ENSMUSG00000114206.1 ENSMUSG00000114206 ENSMUST00000225860 Gm30551 lincRNA Interval_160646 chr8 111288885 111289333 + 0 NA intron (ENSMUSG00000033596.5, intron 4 of 8) protein_coding-intron (ENSMUSG00000033596.5, intron 4 of 12) 11082 ENSMUSG00000033596.5 ENSMUSG00000033596 ENSMUST00000212958 Rfwd3 protein_coding Interval_123994 chr5 37062068 37062284 + 0 NA intron (ENSMUSG00000063646.18, intron 1 of 1) protein_coding-intron (ENSMUSG00000063646.18, intron 1 of 12) -20530 ENSMUSG00000097686.1 ENSMUSG00000097686 ENSMUST00000180816 Gm26647 antisense Interval_21445 chr10 128640166 128641264 + 0 NA TTS (ENSMUSG00000002578.18) protein_coding-TTS (ENSMUSG00000002578.18) -5169 ENSMUSG00000097372.1 ENSMUSG00000097372 ENSMUST00000180875 Gm26876 lincRNA Interval_35240 chr12 18699182 18699400 + 0 NA Intergenic Intergenic 17917 ENSMUSG00000113768.1 ENSMUSG00000113768 ENSMUST00000221499 Gm9237 unprocessed_pseudogene Interval_27900 chr11 70718023 70718225 + 0 NA intron (ENSMUSG00000020821.17, intron 17 of 22) protein_coding-intron (ENSMUSG00000020821.17, intron 16 of 21) 12134 ENSMUSG00000105932.1 ENSMUSG00000105932 ENSMUST00000197857 Mir6925 miRNA Interval_97352 chr2 135283597 135283909 + 0 NA intron (ENSMUSG00000051177.16, intron 9 of 32) protein_coding-intron (ENSMUSG00000051177.16, intron 9 of 31) -68137 ENSMUSG00000085247.1 ENSMUSG00000085247 ENSMUST00000138303 4930545L23Rik antisense Interval_52705 chr14 48752068 48752888 + 0 NA intron (ENSMUSG00000098682.8, intron 3 of 3) lincRNA-intron (ENSMUSG00000098682.8, intron 4 of 4) -11669 ENSMUSG00000115579.1 ENSMUSG00000115579 ENSMUST00000227438 Gm49156 lincRNA Interval_36890 chr12 54993347 54994248 + 0 NA intron (ENSMUSG00000035021.13, intron 1 of 3) protein_coding-intron (ENSMUSG00000035021.13, intron 1 of 3) -3275 ENSMUSG00000088922.1 ENSMUSG00000088922 ENSMUST00000158297 Gm24296 snRNA Interval_117958 chr4 127334834 127335429 + 0 NA Intergenic Intergenic -5970 ENSMUSG00000042367.12 ENSMUSG00000042367 ENSMUST00000046532 Gjb3 protein_coding Interval_174533 chrX 157269588 157270229 + 0 NA intron (ENSMUSG00000057457.11, intron 12 of 14) protein_coding-intron (ENSMUSG00000057457.11, intron 12 of 21) 29713 ENSMUSG00000077609.1 ENSMUSG00000077609 ENSMUST00000104421 Gm25795 snoRNA Interval_127306 chr5 102408558 102410172 + 0 NA Intergenic Intergenic -6838 ENSMUSG00000106295.1 ENSMUSG00000106295 ENSMUST00000197280 Gm42932 processed_pseudogene Interval_93414 chr2 72934976 72935233 + 0 NA Intergenic Intergenic 15883 ENSMUSG00000092851.1 ENSMUSG00000092851 ENSMUST00000175110 Gm25960 miRNA Interval_155235 chr8 28489045 28489389 + 0 NA Intergenic Intergenic -31459 ENSMUSG00000110322.1 ENSMUSG00000110322 ENSMUST00000211297 Gm8110 lincRNA Interval_89138 chr2 17174362 17174937 + 0 NA Intergenic Intergenic 5424 ENSMUSG00000081525.1 ENSMUSG00000081525 ENSMUST00000118746 Gm13325 processed_pseudogene Interval_127007 chr5 99453955 99454665 + 0 NA intron (ENSMUSG00000089809.9, intron 3 of 16) protein_coding-intron (ENSMUSG00000089809.9, intron 2 of 3) -54079 ENSMUSG00000104753.1 ENSMUSG00000104753 ENSMUST00000196037 Gm35172 lincRNA Interval_18675 chr10 89195556 89195757 + 0 NA intron (ENSMUSG00000035189.17, intron 3 of 6) protein_coding-intron (ENSMUSG00000035189.17, intron 1 of 7) 61934 ENSMUSG00000035189.17 ENSMUSG00000035189 ENSMUST00000180843 Ano4 protein_coding Interval_119920 chr4 140920227 140920807 + 0 NA intron (ENSMUSG00000028927.6, intron 3 of 15) protein_coding-intron (ENSMUSG00000028927.6, intron 3 of 15) 1833 ENSMUSG00000064443.1 ENSMUSG00000064443 ENSMUST00000082509 Gm26226 snRNA Interval_42547 chr13 15133735 15133943 + 0 NA Intergenic Intergenic 15207 ENSMUSG00000113389.1 ENSMUSG00000113389 ENSMUST00000223112 Gm9512 processed_pseudogene Interval_83160 chr18 82418565 82419426 + 0 NA Intergenic Intergenic 4630 ENSMUSG00000118256.1 ENSMUSG00000118256 ENSMUST00000237372 Gm50303 processed_pseudogene Interval_161475 chr8 120626192 120626965 + 0 NA intron (ENSMUSG00000097919.1, intron 2 of 3) protein_coding-intron (ENSMUSG00000043687.15, intron 2 of 3) -17372 ENSMUSG00000097500.1 ENSMUSG00000097500 ENSMUST00000181474 Gm26537 antisense Interval_162068 chr8 124845538 124846042 + 0 NA intron (ENSMUSG00000031984.8, intron 2 of 6) protein_coding-intron (ENSMUSG00000031984.8, intron 2 of 6) 14092 ENSMUSG00000090118.1 ENSMUSG00000090118 ENSMUST00000161868 Gm16163 processed_transcript Interval_119853 chr4 140513765 140513987 + 0 NA TTS (ENSMUSG00000040964.16) protein_coding-TTS (ENSMUSG00000040964.16) -67712 ENSMUSG00000118416.1 ENSMUSG00000118416 ENSMUST00000238366 Gm50453 unitary_pseudogene Interval_66595 chr16 35502471 35502690 + 0 NA TTS (ENSMUSG00000099429.1) lincRNA-TTS (ENSMUSG00000099429.1) 6839 ENSMUSG00000099429.1 ENSMUSG00000099429 ENSMUST00000187829 1600019K03Rik lincRNA Interval_29801 chr11 86934813 86935271 + 0 NA Intergenic Intergenic 36982 ENSMUSG00000018427.8 ENSMUSG00000018427 ENSMUST00000238921 Ypel2 protein_coding Interval_113542 chr4 56051629 56052484 + 0 NA Intergenic Intergenic -58317 ENSMUSG00000085643.1 ENSMUSG00000085643 ENSMUST00000134099 Gm12519 lincRNA Interval_115889 chr4 105859480 105860037 + 0 NA Intergenic Intergenic 69224 ENSMUSG00000083780.8 ENSMUSG00000083780 ENSMUST00000119740 Gm12728 protein_coding Interval_131784 chr5 139843045 139843321 + 0 NA Intergenic Intergenic -1747 ENSMUSG00000064694.1 ENSMUSG00000064694 ENSMUST00000082760 Gm24146 misc_RNA Interval_11260 chr1 180553720 180554020 + 0 NA Intergenic Intergenic -33331 ENSMUSG00000098926.1 ENSMUSG00000098926 ENSMUST00000183443 Mir6904 miRNA Interval_104291 chr3 62924026 62924693 + 0 NA promoter-TSS (ENSMUSG00000063001.10) processed_pseudogene-promoter-TSS (ENSMUSG00000063001.10) -126 ENSMUSG00000063001.10 ENSMUSG00000063001 ENSMUST00000077976 Gm9701 processed_pseudogene Interval_35691 chr12 27697580 27697767 + 0 NA Intergenic Intergenic 65870 ENSMUSG00000077344.1 ENSMUSG00000077344 ENSMUST00000104156 Gm24326 snoRNA Interval_55874 chr14 101715427 101715664 + 0 NA Intergenic Intergenic 4111 ENSMUSG00000115110.1 ENSMUSG00000115110 ENSMUST00000227901 Gm49269 processed_pseudogene Interval_161367 chr8 119984155 119984504 + 0 NA intron (ENSMUSG00000092329.1, intron 1 of 15) protein_coding-intron (ENSMUSG00000092329.1, intron 1 of 15) -28879 ENSMUSG00000031825.16 ENSMUSG00000031825 ENSMUST00000144801 Crispld2 protein_coding Interval_3576 chr1 59684606 59686291 + 0 NA intron (ENSMUSG00000026020.9, intron 1 of 14) protein_coding-intron (ENSMUSG00000026020.9, intron 1 of 12) 439 ENSMUSG00000026020.9 ENSMUSG00000026020 ENSMUST00000188390 Nop58 protein_coding Interval_21442 chr10 128631654 128632199 + 0 NA TTS (ENSMUSG00000002578.18) protein_coding-TTS (ENSMUSG00000002578.18) -5402 ENSMUSG00000025362.6 ENSMUSG00000025362 ENSMUST00000219773 Rps26 protein_coding Interval_26209 chr11 55113450 55115089 + 0 NA Intergenic Intergenic 4526 ENSMUSG00000044751.5 ENSMUSG00000044751 ENSMUST00000119447 Atp5pb-ps processed_pseudogene Interval_26173 chr11 54882583 54883067 + 0 NA Intergenic Intergenic 16344 ENSMUSG00000020267.6 ENSMUSG00000020267 ENSMUST00000117710 Hint1 protein_coding Interval_160329 chr8 108450807 108451503 + 0 NA intron (ENSMUSG00000038872.10, intron 3 of 15) protein_coding-intron (ENSMUSG00000038872.10, intron 3 of 15) 86066 ENSMUSG00000109868.1 ENSMUSG00000109868 ENSMUST00000211262 Gm39244 lincRNA Interval_47442 chr13 84281503 84281749 + 0 NA TTS (ENSMUSG00000114602.1) sense_intronic-TTS (ENSMUSG00000114602.1) 190 ENSMUSG00000114827.1 ENSMUSG00000114827 ENSMUST00000225916 Gm46432 processed_pseudogene Interval_43497 chr13 31915371 31917028 + 0 NA intron (ENSMUSG00000038372.14, intron 9 of 10) protein_coding-intron (ENSMUSG00000038372.14, intron 9 of 10) 31974 ENSMUSG00000083149.2 ENSMUSG00000083149 ENSMUST00000118067 Gm11380 processed_pseudogene Interval_18284 chr10 84569613 84570072 + 0 NA Intergenic Intergenic -7055 ENSMUSG00000020034.7 ENSMUSG00000020034 ENSMUST00000160057 Tcp11l2 protein_coding Interval_99251 chr2 158375523 158377106 + 0 NA exon (ENSMUSG00000044349.16, exon 2 of 5) protein_coding-exon (ENSMUSG00000044349.16, exon 2 of 5) 552 ENSMUSG00000044349.16 ENSMUSG00000044349 ENSMUST00000239345 Snhg11 protein_coding Interval_58324 chr15 32377291 32377818 + 0 NA intron (ENSMUSG00000022231.10, intron 2 of 7) protein_coding-intron (ENSMUSG00000022231.10, intron 2 of 22) 132729 ENSMUSG00000022231.10 ENSMUSG00000022231 ENSMUST00000227429 Sema5a protein_coding Interval_43586 chr13 33893727 33894684 + 0 NA intron (ENSMUSG00000052180.15, intron 4 of 4) protein_coding-intron (ENSMUSG00000052180.15, intron 4 of 6) 11502 ENSMUSG00000052180.15 ENSMUSG00000052180 ENSMUST00000222216 Serpinb6c protein_coding Interval_171635 chr9 119751126 119752193 + 0 NA Intergenic Intergenic -63620 ENSMUSG00000034533.10 ENSMUSG00000034533 ENSMUST00000213401 Scn10a protein_coding Interval_95616 chr2 112833538 112834271 + 0 NA exon (ENSMUSG00000057378.15, exon 35 of 103) protein_coding-exon (ENSMUSG00000057378.15, exon 35 of 103) -177356 ENSMUSG00000057378.15 ENSMUSG00000057378 ENSMUST00000208135 Ryr3 protein_coding Interval_114758 chr4 84786475 84787698 + 0 NA Intergenic Intergenic 45611 ENSMUSG00000086413.1 ENSMUSG00000086413 ENSMUST00000141637 Gm12415 lincRNA Interval_170793 chr9 110826871 110827271 + 0 NA exon (ENSMUSG00000058398.6, exon 1 of 6) protein_coding-exon (ENSMUSG00000058398.6, exon 1 of 6) 381 ENSMUSG00000058398.6 ENSMUSG00000058398 ENSMUST00000077549 Prss43 protein_coding Interval_52889 chr14 51863241 51863993 + 0 NA Intergenic Intergenic 9918 ENSMUSG00000062148.6 ENSMUSG00000062148 ENSMUST00000074477 Ear6 protein_coding Interval_51375 chr14 27077018 27077315 + 0 NA intron (ENSMUSG00000040717.6, intron 4 of 13) protein_coding-intron (ENSMUSG00000040717.6, intron 2 of 12) 9769 ENSMUSG00000040717.6 ENSMUSG00000040717 ENSMUST00000225829 Il17rd protein_coding Interval_108708 chr3 130576435 130576884 + 0 NA intron (ENSMUSG00000058897.18, intron 30 of 37) protein_coding-intron (ENSMUSG00000058897.18, intron 31 of 37) 14717 ENSMUSG00000105760.1 ENSMUSG00000105760 ENSMUST00000196901 Gm43211 TEC Interval_100790 chr2 172544372 172544987 + 0 NA Intergenic Intergenic -6312 ENSMUSG00000028640.11 ENSMUSG00000028640 ENSMUST00000142633 Tfap2c protein_coding Interval_73350 chr17 36461197 36461904 + 0 NA intron (ENSMUSG00000048231.14, intron 2 of 4) protein_coding-intron (ENSMUSG00000048231.14, intron 2 of 5) 779 ENSMUSG00000048231.14 ENSMUSG00000048231 ENSMUST00000169950 H2-M10.4 protein_coding Interval_68406 chr16 75997028 75997618 + 0 NA intron (ENSMUSG00000022876.18, intron 2 of 6) protein_coding-intron (ENSMUSG00000022876.18, intron 2 of 13) -3461 ENSMUSG00000087214.2 ENSMUSG00000087214 ENSMUST00000128832 Gm15555 antisense Interval_124134 chr5 38580401 38581499 + 0 NA Intergenic Intergenic 5919 ENSMUSG00000086422.1 ENSMUSG00000086422 ENSMUST00000147322 4930421P07Rik processed_pseudogene Interval_12160 chr1 190261186 190261506 + 0 NA Intergenic Intergenic -90666 ENSMUSG00000010175.13 ENSMUSG00000010175 ENSMUST00000177288 Prox1 protein_coding Interval_60829 chr15 77013179 77014394 + 0 NA promoter-TSS (ENSMUSG00000116272.1) antisense-promoter-TSS (ENSMUSG00000116272.1) -307 ENSMUSG00000116272.1 ENSMUSG00000116272 ENSMUST00000230714 Gm49540 antisense Interval_12192 chr1 190747087 190747708 + 0 NA intron (ENSMUSG00000089872.10, intron 8 of 12) protein_coding-intron (ENSMUSG00000089872.10, intron 8 of 12) 152320 ENSMUSG00000089872.10 ENSMUSG00000089872 ENSMUST00000159066 Rps6kc1 protein_coding Interval_36059 chr12 34658260 34658472 + 0 NA intron (ENSMUSG00000004698.11, intron 2 of 11) protein_coding-intron (ENSMUSG00000004698.11, intron 3 of 4) -29728 ENSMUSG00000113386.1 ENSMUSG00000113386 ENSMUST00000222121 Gm47357 sense_intronic Interval_150559 chr7 112444425 112445015 + 0 NA intron (ENSMUSG00000030770.15, intron 2 of 13) protein_coding-intron (ENSMUSG00000030770.15, intron 1 of 12) 16815 ENSMUSG00000030770.15 ENSMUSG00000030770 ENSMUST00000126047 Parva protein_coding Interval_146753 chr7 49933016 49934267 + 0 NA intron (ENSMUSG00000039728.15, intron 6 of 14) protein_coding-intron (ENSMUSG00000039728.15, intron 7 of 15) 23342 ENSMUSG00000039728.15 ENSMUSG00000039728 ENSMUST00000107605 Slc6a5 protein_coding Interval_71249 chr17 21585220 21585508 + 0 NA intron (ENSMUSG00000067931.6, intron 5 of 5) protein_coding-intron (ENSMUSG00000067931.6, intron 5 of 5) 18356 ENSMUSG00000067931.6 ENSMUSG00000067931 ENSMUST00000088787 Zfp948 protein_coding Interval_111680 chr4 25768739 25769564 + 0 NA intron (ENSMUSG00000055373.8, intron 1 of 2) protein_coding-intron (ENSMUSG00000055373.8, intron 1 of 2) 30704 ENSMUSG00000055373.8 ENSMUSG00000055373 ENSMUST00000149875 Fut9 protein_coding Interval_15683 chr10 53509229 53509586 + 0 NA intron (ENSMUSG00000112739.1, intron 3 of 3) lincRNA-intron (ENSMUSG00000112739.1, intron 3 of 3) 9582 ENSMUSG00000112739.1 ENSMUSG00000112739 ENSMUST00000218774 Gm20597 lincRNA Interval_6002 chr1 93834199 93835146 + 0 NA intron (ENSMUSG00000073609.9, intron 5 of 9) protein_coding-intron (ENSMUSG00000073609.9, intron 5 of 9) 8387 ENSMUSG00000073609.9 ENSMUSG00000073609 ENSMUST00000188532 D2hgdh protein_coding Interval_85247 chr19 24154253 24154459 + 0 NA exon (ENSMUSG00000118371.1, exon 1 of 1) processed_pseudogene-exon (ENSMUSG00000118371.1, exon 1 of 1) 286 ENSMUSG00000118371.1 ENSMUSG00000118371 ENSMUST00000237530 Gm50308 processed_pseudogene Interval_145945 chr7 42556988 42557913 + 0 NA Intergenic Intergenic 20785 ENSMUSG00000108446.1 ENSMUSG00000108446 ENSMUST00000205775 Gm44997 processed_transcript Interval_60942 chr15 78044598 78045152 + 0 NA intron (ENSMUSG00000019146.2, intron 1 of 3) protein_coding-intron (ENSMUSG00000019146.2, intron 1 of 3) -74831 ENSMUSG00000092375.1 ENSMUSG00000092375 ENSMUST00000174277 A730060N03Rik antisense Interval_14556 chr10 35478496 35479500 + 0 NA exon (ENSMUSG00000111753.1, exon 2 of 2) lincRNA-exon (ENSMUSG00000111753.1, exon 2 of 2) 6398 ENSMUSG00000111753.1 ENSMUSG00000111753 ENSMUST00000214107 1700054O05Rik lincRNA Interval_33240 chr11 115435489 115436780 + 0 NA Intergenic Intergenic -4411 ENSMUSG00000070332.4 ENSMUSG00000070332 ENSMUST00000093914 Trim80 protein_coding Interval_9256 chr1 155557684 155558913 + 0 NA exon (ENSMUSG00000033701.13, exon 1 of 8) protein_coding-exon (ENSMUSG00000033701.13, exon 1 of 8) -4819 ENSMUSG00000033701.13 ENSMUSG00000033701 ENSMUST00000192730 Acbd6 protein_coding Interval_74727 chr17 56182800 56184349 + 0 NA promoter-TSS (ENSMUSG00000019579.13) protein_coding-promoter-TSS (ENSMUSG00000019579.13) 90 ENSMUSG00000019579.13 ENSMUSG00000019579 ENSMUST00000151093 Mydgf protein_coding Interval_13815 chr10 22843141 22844267 + 0 NA Intergenic Intergenic -23545 ENSMUSG00000045680.8 ENSMUSG00000045680 ENSMUST00000218002 Tcf21 protein_coding Interval_53544 chr14 58786046 58788003 + 0 NA Intergenic Intergenic 92291 ENSMUSG00000098157.1 ENSMUSG00000098157 ENSMUST00000182482 Gm9022 transcribed_processed_pseudogene Interval_70398 chr17 9755606 9757506 + 0 NA intron (ENSMUSG00000117264.1, intron 3 of 3) processed_transcript-intron (ENSMUSG00000117264.1, intron 3 of 3) 19310 ENSMUSG00000117264.1 ENSMUSG00000117264 ENSMUST00000233594 4930452A19Rik processed_transcript Interval_103106 chr3 35404625 35406050 + 0 NA Intergenic Intergenic -8496 ENSMUSG00000106512.1 ENSMUSG00000106512 ENSMUST00000197222 Gm43078 TEC Interval_140911 chr6 122714935 122716862 + 0 NA Intergenic Intergenic 8409 ENSMUSG00000012396.12 ENSMUSG00000012396 ENSMUST00000012540 Nanog protein_coding Interval_38584 chr12 80273143 80274083 + 0 NA Intergenic Intergenic 14170 ENSMUSG00000112336.1 ENSMUSG00000112336 ENSMUST00000218666 Gm47766 antisense Interval_126766 chr5 92758703 92759414 + 0 NA intron (ENSMUSG00000029381.16, intron 1 of 11) protein_coding-intron (ENSMUSG00000029381.16, intron 1 of 10) 22853 ENSMUSG00000092266.1 ENSMUSG00000092266 ENSMUST00000174621 Gm20500 sense_intronic Interval_23302 chr11 21263373 21263610 + 0 NA intron (ENSMUSG00000020128.15, intron 2 of 22) protein_coding-intron (ENSMUSG00000020128.15, intron 2 of 22) -13931 ENSMUSG00000089155.1 ENSMUSG00000089155 ENSMUST00000158530 Gm23582 snoRNA Interval_92308 chr2 58574473 58574699 + 0 NA intron (ENSMUSG00000026839.17, intron 1 of 7) protein_coding-intron (ENSMUSG00000026839.17, intron 1 of 7) -58314 ENSMUSG00000026836.15 ENSMUSG00000026836 ENSMUST00000126407 Acvr1 protein_coding Interval_95763 chr2 115962994 115964006 + 0 NA intron (ENSMUSG00000027210.20, intron 3 of 3) protein_coding-intron (ENSMUSG00000027210.20, intron 8 of 11) -94633 ENSMUSG00000027210.20 ENSMUSG00000027210 ENSMUST00000138526 Meis2 protein_coding Interval_105443 chr3 86546614 86548433 + 0 NA promoter-TSS (ENSMUSG00000028080.16) protein_coding-promoter-TSS (ENSMUSG00000028080.16) 1106 ENSMUSG00000057777.4 ENSMUSG00000057777 ENSMUST00000191695 Mab21l2 protein_coding Interval_37429 chr12 68500992 68501236 + 0 NA promoter-TSS (ENSMUSG00000113561.1) processed_pseudogene-promoter-TSS (ENSMUSG00000113561.1) 92 ENSMUSG00000113561.1 ENSMUSG00000113561 ENSMUST00000222149 Gm19176 processed_pseudogene Interval_29950 chr11 87986251 87987967 + 0 NA promoter-TSS (ENSMUSG00000020483.14) protein_coding-promoter-TSS (ENSMUSG00000020483.14) -3097 ENSMUSG00000020483.14 ENSMUSG00000020483 ENSMUST00000146941 Dynll2 protein_coding Interval_132097 chr5 142750354 142750766 + 0 NA exon (ENSMUSG00000039477.16, exon 13 of 25) protein_coding-exon (ENSMUSG00000039477.16, exon 13 of 25) 15462 ENSMUSG00000039477.16 ENSMUSG00000039477 ENSMUST00000198181 Tnrc18 protein_coding Interval_170963 chr9 113324023 113325237 + 0 NA intron (ENSMUSG00000110784.1, intron 3 of 3) lincRNA-intron (ENSMUSG00000110784.1, intron 3 of 3) 27739 ENSMUSG00000110784.1 ENSMUSG00000110784 ENSMUST00000215648 Gm39436 lincRNA Interval_47695 chr13 91378825 91379094 + 0 NA intron (ENSMUSG00000097182.2, intron 1 of 2) lincRNA-intron (ENSMUSG00000097182.2, intron 1 of 2) -4665 ENSMUSG00000099340.1 ENSMUSG00000099340 ENSMUST00000188207 Gm29540 sense_intronic Interval_169730 chr9 100748359 100748730 + 0 NA intron (ENSMUSG00000037286.15, intron 4 of 5) protein_coding-intron (ENSMUSG00000037286.15, intron 4 of 32) 45331 ENSMUSG00000104272.1 ENSMUSG00000104272 ENSMUST00000195122 Gm38297 TEC Interval_76098 chr17 74959150 74960434 + 0 NA Intergenic Intergenic 9401 ENSMUSG00000117342.1 ENSMUSG00000117342 ENSMUST00000234138 Gm31818 processed_transcript Interval_33094 chr11 114367486 114367981 + 0 NA Intergenic Intergenic 10604 ENSMUSG00000081548.1 ENSMUSG00000081548 ENSMUST00000122121 Gm11692 processed_pseudogene Interval_63327 chr15 100326762 100327075 + 0 NA intron (ENSMUSG00000054619.7, intron 1 of 1) protein_coding-intron (ENSMUSG00000054619.7, intron 1 of 1) -8011 ENSMUSG00000058057.5 ENSMUSG00000058057 ENSMUST00000075420 Mettl7a3 protein_coding Interval_26874 chr11 61226396 61226601 + 0 NA intron (ENSMUSG00000010025.19, intron 9 of 9) protein_coding-intron (ENSMUSG00000010025.19, intron 9 of 9) 18961 ENSMUSG00000019102.10 ENSMUSG00000019102 ENSMUST00000019246 Aldh3a1 protein_coding Interval_173234 chrX 74791564 74791761 + 0 NA exon (ENSMUSG00000082170.1, exon 1 of 1) processed_pseudogene-exon (ENSMUSG00000082170.1, exon 1 of 1) 496 ENSMUSG00000082170.1 ENSMUSG00000082170 ENSMUST00000118796 Gm8617 processed_pseudogene Interval_13950 chr10 24929064 24929259 + 0 NA intron (ENSMUSG00000112758.1, intron 1 of 1) bidirectional_promoter_lncRNA-intron (ENSMUSG00000112758.1, intron 1 of 1) 1542 ENSMUSG00000112758.1 ENSMUSG00000112758 ENSMUST00000219852 Gm36172 bidirectional_promoter_lncRNA Interval_166470 chr9 59750399 59751733 + 0 NA promoter-TSS (ENSMUSG00000051705.13) protein_coding-promoter-TSS (ENSMUSG00000051705.13) -428 ENSMUSG00000051705.13 ENSMUSG00000051705 ENSMUST00000216045 Senp8 protein_coding Interval_102205 chr3 19448434 19450015 + 0 NA Intergenic Intergenic -82023 ENSMUSG00000027606.12 ENSMUSG00000027606 ENSMUST00000165693 Dnajc5b protein_coding Interval_126397 chr5 87948404 87948656 + 0 NA intron (ENSMUSG00000099605.1, intron 2 of 4) antisense-intron (ENSMUSG00000099605.1, intron 2 of 4) -14955 ENSMUSG00000055961.7 ENSMUSG00000055961 ENSMUST00000199477 BC051076 antisense Interval_74421 chr17 50172627 50173050 + 0 NA intron (ENSMUSG00000039316.14, intron 1 of 6) protein_coding-intron (ENSMUSG00000039316.14, intron 1 of 9) 17659 ENSMUSG00000039316.14 ENSMUSG00000039316 ENSMUST00000156094 Rftn1 protein_coding Interval_32712 chr11 109902543 109902965 + 0 NA Intergenic Intergenic -33562 ENSMUSG00000085629.1 ENSMUSG00000085629 ENSMUST00000149226 Gm11697 antisense Interval_84590 chr19 13818658 13819076 + 0 NA intron (ENSMUSG00000045395.4, intron 1 of 1) protein_coding-intron (ENSMUSG00000045395.4, intron 1 of 1) 580 ENSMUSG00000045395.4 ENSMUSG00000045395 ENSMUST00000055672 Olfr1499 protein_coding Interval_47285 chr13 80722744 80723875 + 0 NA Intergenic Intergenic 162215 ENSMUSG00000089827.1 ENSMUSG00000089827 ENSMUST00000161006 1700023H06Rik processed_transcript Interval_141485 chr6 128550934 128551243 + 0 NA intron (ENSMUSG00000047228.9, intron 2 of 4) protein_coding-intron (ENSMUSG00000047228.9, intron 24 of 35) 2190 ENSMUSG00000047228.9 ENSMUSG00000047228 ENSMUST00000203129 A2ml1 protein_coding Interval_163570 chr9 22262694 22262933 + 0 NA exon (ENSMUSG00000111205.1, exon 2 of 2) bidirectional_promoter_lncRNA-exon (ENSMUSG00000111205.1, exon 2 of 2) 2711 ENSMUSG00000111205.1 ENSMUSG00000111205 ENSMUST00000216780 Gm39307 bidirectional_promoter_lncRNA Interval_49708 chr13 114141725 114141928 + 0 NA intron (ENSMUSG00000114213.1, intron 7 of 13) protein_coding-intron (ENSMUSG00000042348.10, intron 4 of 4) 9766 ENSMUSG00000114213.1 ENSMUSG00000114213 ENSMUST00000225044 A430090L17Rik antisense Interval_21021 chr10 123401053 123401360 + 0 NA intron (ENSMUSG00000044071.9, intron 1 of 4) protein_coding-intron (ENSMUSG00000044071.9, intron 1 of 5) -31360 ENSMUSG00000084461.1 ENSMUSG00000084461 ENSMUST00000122512 Gm22958 snRNA Interval_129122 chr5 117533508 117534578 + 0 NA intron (ENSMUSG00000061578.8, intron 3 of 20) protein_coding-intron (ENSMUSG00000061578.8, intron 3 of 3) 13344 ENSMUSG00000107199.1 ENSMUSG00000107199 ENSMUST00000201553 Gm42550 TEC Interval_123762 chr5 35313354 35314823 + 0 NA Intergenic Intergenic 35769 ENSMUSG00000045318.6 ENSMUSG00000045318 ENSMUST00000049545 Adra2c protein_coding Interval_124355 chr5 44427296 44427683 + 0 NA exon (ENSMUSG00000104800.1, exon 1 of 4) lincRNA-exon (ENSMUSG00000104800.1, exon 1 of 4) 103 ENSMUSG00000104800.1 ENSMUSG00000104800 ENSMUST00000199005 Gm36017 lincRNA Interval_173957 chrX 116557375 116558042 + 0 NA Intergenic Intergenic 108764 ENSMUSG00000072995.1 ENSMUSG00000072995 ENSMUST00000101269 Cpxcr1 protein_coding Interval_62416 chr15 92241784 92242001 + 0 NA intron (ENSMUSG00000055022.14, intron 6 of 23) protein_coding-intron (ENSMUSG00000055022.14, intron 6 of 23) -102467 ENSMUSG00000097068.2 ENSMUSG00000097068 ENSMUST00000181901 Gm26760 lincRNA Interval_173976 chrX 120385516 120386095 + 0 NA intron (ENSMUSG00000034755.18, intron 2 of 6) protein_coding-intron (ENSMUSG00000034755.18, intron 2 of 10) 14593 ENSMUSG00000081546.1 ENSMUSG00000081546 ENSMUST00000120283 Gm14927 processed_pseudogene Interval_133662 chr6 8223975 8224489 + 0 NA intron (ENSMUSG00000042447.13, intron 5 of 11) protein_coding-intron (ENSMUSG00000042447.13, intron 5 of 11) -5273 ENSMUSG00000042447.13 ENSMUSG00000042447 ENSMUST00000161134 Mios protein_coding Interval_108130 chr3 121762216 121762859 + 0 NA exon (ENSMUSG00000106087.1, exon 1 of 1) TEC-exon (ENSMUSG00000106087.1, exon 1 of 1) 2367 ENSMUSG00000106087.1 ENSMUSG00000106087 ENSMUST00000199084 Gm43609 TEC Interval_158991 chr8 88508596 88508832 + 0 NA Intergenic Intergenic -51319 ENSMUSG00000110187.1 ENSMUSG00000110187 ENSMUST00000209918 Gm45496 TEC Interval_50600 chr14 16359333 16359940 + 0 NA intron (ENSMUSG00000114243.1, intron 1 of 1) antisense-intron (ENSMUSG00000114243.1, intron 1 of 1) 6632 ENSMUSG00000114243.1 ENSMUSG00000114243 ENSMUST00000225819 Gm48163 antisense Interval_122470 chr5 23240168 23240455 + 0 NA intron (ENSMUSG00000106379.1, intron 3 of 3) protein_coding-intron (ENSMUSG00000106379.1, intron 2 of 2) -16515 ENSMUSG00000104866.1 ENSMUSG00000104866 ENSMUST00000199085 Gm42948 antisense Interval_70141 chr17 5751915 5753488 + 0 NA exon (ENSMUSG00000034265.8, exon 9 of 9) protein_coding-exon (ENSMUSG00000034265.8, exon 9 of 9) -46790 ENSMUSG00000096965.7 ENSMUSG00000096965 ENSMUST00000181392 3300005D01Rik lincRNA Interval_124765 chr5 53727928 53728207 + 0 NA Intergenic Intergenic -20507 ENSMUSG00000029193.7 ENSMUSG00000029193 ENSMUST00000202946 Cckar protein_coding Interval_50791 chr14 19870033 19870241 + 0 NA intron (ENSMUSG00000114436.1, intron 2 of 2) lincRNA-intron (ENSMUSG00000114436.1, intron 2 of 2) 3157 ENSMUSG00000114436.1 ENSMUSG00000114436 ENSMUST00000224546 Gm48283 lincRNA Interval_66243 chr16 32561212 32561668 + 0 NA intron (ENSMUSG00000052363.8, intron 3 of 3) protein_coding-intron (ENSMUSG00000052363.8, intron 3 of 3) 9698 ENSMUSG00000116957.1 ENSMUSG00000116957 ENSMUST00000232103 Gm34680 lincRNA Interval_81109 chr18 53943189 53943400 + 0 NA intron (ENSMUSG00000073563.3, intron 11 of 12) protein_coding-intron (ENSMUSG00000073563.3, intron 10 of 12) -41027 ENSMUSG00000069376.2 ENSMUSG00000069376 ENSMUST00000091897 Gm5507 processed_pseudogene Interval_71367 chr17 22728279 22728553 + 0 NA Intergenic Intergenic -6547 ENSMUSG00000098210.1 ENSMUSG00000098210 ENSMUST00000183060 Gm5224 processed_pseudogene Interval_116561 chr4 115702900 115703496 + 0 NA Intergenic Intergenic -4053 ENSMUSG00000081172.1 ENSMUSG00000081172 ENSMUST00000120013 Gm12849 processed_pseudogene Interval_166814 chr9 62922825 62923015 + 0 NA TTS (ENSMUSG00000032405.10) protein_coding-TTS (ENSMUSG00000032405.10) -54920 ENSMUSG00000074250.11 ENSMUSG00000074250 ENSMUST00000139570 Gm10653 transcribed_processed_pseudogene Interval_140432 chr6 118047483 118048494 + 0 NA intron (ENSMUSG00000030134.11, intron 1 of 12) protein_coding-intron (ENSMUSG00000030134.11, intron 1 of 12) -18431 ENSMUSG00000030134.11 ENSMUSG00000030134 ENSMUST00000203482 Rasgef1a protein_coding Interval_60492 chr15 74380814 74381150 + 0 NA Intergenic Intergenic 59462 ENSMUSG00000118581.1 ENSMUSG00000118581 ENSMUST00000239328 AC119183.1 unitary_pseudogene Interval_78254 chr18 10821896 10822488 + 0 NA Intergenic Intergenic -36309 ENSMUSG00000095438.1 ENSMUSG00000095438 ENSMUST00000179771 Mir133a-1hg antisense Interval_110018 chr3 152485554 152486911 + 0 NA intron (ENSMUSG00000039058.11, intron 3 of 6) protein_coding-intron (ENSMUSG00000039058.11, intron 10 of 13) 40520 ENSMUSG00000039058.11 ENSMUSG00000039058 ENSMUST00000198552 Ak5 protein_coding Interval_158598 chr8 84689014 84689821 + 0 NA promoter-TSS (ENSMUSG00000001909.16) protein_coding-promoter-TSS (ENSMUSG00000001909.16) -1826 ENSMUSG00000001910.5 ENSMUSG00000001910 ENSMUST00000238687 Nacc1 protein_coding Interval_102445 chr3 26406938 26407171 + 0 NA Intergenic Intergenic 26609 ENSMUSG00000102274.1 ENSMUSG00000102274 ENSMUST00000192270 Gm4855 processed_pseudogene Interval_84342 chr19 10224730 10225365 + 0 NA TTS (ENSMUSG00000036098.15) protein_coding-TTS (ENSMUSG00000036098.15) 15701 ENSMUSG00000036098.15 ENSMUSG00000036098 ENSMUST00000189439 Myrf protein_coding Interval_30078 chr11 89029572 89031288 + 0 NA Intergenic Intergenic 30318 ENSMUSG00000000276.11 ENSMUSG00000000276 ENSMUST00000152772 Dgke protein_coding Interval_168084 chr9 76041526 76041920 + 0 NA intron (ENSMUSG00000007908.14, intron 1 of 1) protein_coding-intron (ENSMUSG00000007908.14, intron 1 of 8) -25726 ENSMUSG00000103354.1 ENSMUSG00000103354 ENSMUST00000194758 Gm38083 TEC Interval_84911 chr19 18712817 18713805 + 0 NA promoter-TSS (ENSMUSG00000047044.7) protein_coding-promoter-TSS (ENSMUSG00000047044.7) 118 ENSMUSG00000047044.7 ENSMUSG00000047044 ENSMUST00000055792 D030056L22Rik protein_coding Interval_32813 chr11 111019430 111020299 + 0 NA intron (ENSMUSG00000051497.15, intron 1 of 1) protein_coding-intron (ENSMUSG00000051497.15, intron 1 of 1) -46300 ENSMUSG00000041695.2 ENSMUSG00000041695 ENSMUST00000042970 Kcnj2 protein_coding Interval_110758 chr4 8110141 8110359 + 0 NA Intergenic Intergenic -8370 ENSMUSG00000083068.1 ENSMUSG00000083068 ENSMUST00000120050 Gm11800 processed_pseudogene Interval_76515 chr17 80698431 80699249 + 0 NA intron (ENSMUSG00000024242.15, intron 1 of 1) protein_coding-intron (ENSMUSG00000024242.15, intron 1 of 33) -29291 ENSMUSG00000054957.5 ENSMUSG00000054957 ENSMUST00000068277 Gm9959 pseudogene Interval_111944 chr4 32722867 32723629 + 0 NA intron (ENSMUSG00000058006.12, intron 48 of 101) protein_coding-intron (ENSMUSG00000058006.12, intron 48 of 101) 66129 ENSMUSG00000058006.12 ENSMUSG00000058006 ENSMUST00000124361 Mdn1 protein_coding Interval_148125 chr7 79374826 79376169 + 0 NA TTS (ENSMUSG00000039194.16) protein_coding-TTS (ENSMUSG00000039194.16) 11415 ENSMUSG00000039194.16 ENSMUSG00000039194 ENSMUST00000206695 Rlbp1 protein_coding Interval_16551 chr10 63582578 63584058 + 0 NA exon (ENSMUSG00000060843.11, exon 3 of 3) protein_coding-exon (ENSMUSG00000060843.11, exon 3 of 3) -161529 ENSMUSG00000048185.5 ENSMUSG00000048185 ENSMUST00000054760 Gm7075 protein_coding Interval_157529 chr8 71224165 71224783 + 0 NA TTS (ENSMUSG00000110664.1) processed_pseudogene-TTS (ENSMUSG00000110664.1) 525 ENSMUSG00000110664.1 ENSMUSG00000110664 ENSMUST00000212311 Aprt-ps processed_pseudogene Interval_162798 chr9 9198697 9199399 + 0 NA intron (ENSMUSG00000050730.17, intron 1 of 5) protein_coding-intron (ENSMUSG00000050730.17, intron 1 of 22) -37240 ENSMUSG00000085253.3 ENSMUSG00000085253 ENSMUST00000150263 Gm16833 antisense Interval_57367 chr15 9991744 9992128 + 0 NA Intergenic Intergenic -59890 ENSMUSG00000088156.1 ENSMUSG00000088156 ENSMUST00000157531 Gm26350 misc_RNA Interval_28678 chr11 77714093 77714613 + 0 NA intron (ENSMUSG00000037857.16, intron 3 of 3) protein_coding-intron (ENSMUSG00000037857.16, intron 3 of 3) 7481 ENSMUSG00000000724.10 ENSMUSG00000000724 ENSMUST00000078623 Cryba1 protein_coding Interval_94993 chr2 102684925 102685541 + 0 NA intron (ENSMUSG00000005089.15, intron 1 of 1) protein_coding-intron (ENSMUSG00000005089.15, intron 1 of 10) 61527 ENSMUSG00000087185.1 ENSMUSG00000087185 ENSMUST00000147082 Gm13872 antisense Interval_131926 chr5 140829871 140831034 + 0 NA promoter-TSS (ENSMUSG00000000149.10) protein_coding-promoter-TSS (ENSMUSG00000000149.10) -295 ENSMUSG00000000149.10 ENSMUSG00000000149 ENSMUST00000198447 Gna12 protein_coding Interval_157150 chr8 66473065 66474784 + 0 NA TTS (ENSMUSG00000025591.6) protein_coding-TTS (ENSMUSG00000025591.6) 12597 ENSMUSG00000025591.6 ENSMUSG00000025591 ENSMUST00000213036 Tma16 protein_coding Interval_77874 chr18 4939912 4940683 + 0 NA intron (ENSMUSG00000024236.18, intron 1 of 35) protein_coding-intron (ENSMUSG00000024236.18, intron 1 of 37) -94869 ENSMUSG00000024236.18 ENSMUSG00000024236 ENSMUST00000129543 Svil protein_coding Interval_4051 chr1 66862013 66863569 + 0 NA intron (ENSMUSG00000026003.5, intron 1 of 10) protein_coding-intron (ENSMUSG00000026003.5, intron 1 of 10) -4006 ENSMUSG00000077328.1 ENSMUSG00000077328 ENSMUST00000104140 Gm25832 snoRNA Interval_129334 chr5 119215002 119215693 + 0 NA Intergenic Intergenic -15329 ENSMUSG00000107334.1 ENSMUSG00000107334 ENSMUST00000200918 Gm7538 lincRNA Interval_91248 chr2 36397503 36398663 + 0 NA Intergenic Intergenic 8951 ENSMUSG00000083101.1 ENSMUSG00000083101 ENSMUST00000121366 Gm13430 processed_pseudogene Interval_14450 chr10 33950586 33951547 + 0 NA exon (ENSMUSG00000039531.8, exon 1 of 7) protein_coding-exon (ENSMUSG00000039531.8, exon 1 of 7) -17726 ENSMUSG00000039531.8 ENSMUSG00000039531 ENSMUST00000218892 Zup1 protein_coding Interval_32896 chr11 112876311 112876525 + 0 NA Intergenic Intergenic 51239 ENSMUSG00000020624.3 ENSMUSG00000020624 ENSMUST00000153429 4933434M16Rik lincRNA Interval_34530 chr12 4914582 4915406 + 0 NA Intergenic Intergenic -7730 ENSMUSG00000020634.12 ENSMUSG00000020634 ENSMUST00000141360 Ubxn2a protein_coding Interval_165621 chr9 50462545 50463790 + 0 NA Intergenic Intergenic -31360 ENSMUSG00000032068.14 ENSMUSG00000032068 ENSMUST00000188047 Plet1 protein_coding Interval_90394 chr2 30156893 30158028 + 0 NA Intergenic Intergenic -1938 ENSMUSG00000085401.2 ENSMUSG00000085401 ENSMUST00000120862 Slc39a1-ps processed_pseudogene Interval_74094 chr17 46552813 46553387 + 0 NA TTS (ENSMUSG00000106514.1) miRNA-TTS (ENSMUSG00000106514.1) 789 ENSMUSG00000106514.1 ENSMUSG00000106514 ENSMUST00000199897 Mir6976 miRNA Interval_24016 chr11 29525868 29526998 + 0 NA promoter-TSS (ENSMUSG00000020459.14) protein_coding-promoter-TSS (ENSMUSG00000020459.14) -14 ENSMUSG00000020459.14 ENSMUSG00000020459 ENSMUST00000129893 Mtif2 protein_coding Interval_27110 chr11 62966177 62967826 + 0 NA intron (ENSMUSG00000042200.3, intron 1 of 1) protein_coding-intron (ENSMUSG00000042200.3, intron 1 of 1) 15808 ENSMUSG00000042200.3 ENSMUSG00000042200 ENSMUST00000035854 Cdrt4 protein_coding Interval_60804 chr15 76861797 76862491 + 0 NA intron (ENSMUSG00000022526.8, intron 2 of 2) protein_coding-intron (ENSMUSG00000022526.8, intron 3 of 3) 8841 ENSMUSG00000022526.8 ENSMUSG00000022526 ENSMUST00000230524 Zfp251 protein_coding Interval_63606 chr15 102308625 102309469 + 0 NA promoter-TSS (ENSMUSG00000116183.1) processed_pseudogene-promoter-TSS (ENSMUSG00000116183.1) -285 ENSMUSG00000116183.1 ENSMUSG00000116183 ENSMUST00000230120 Gm49480 processed_pseudogene Interval_820 chr1 11817553 11818162 + 0 NA intron (ENSMUSG00000057715.13, intron 9 of 12) protein_coding-intron (ENSMUSG00000057715.13, intron 9 of 13) 113650 ENSMUSG00000103561.1 ENSMUSG00000103561 ENSMUST00000195360 Gm38069 TEC Interval_156954 chr8 62270272 62270663 + 0 NA Intergenic Intergenic -76255 ENSMUSG00000110252.1 ENSMUSG00000110252 ENSMUST00000211074 Gm2961 processed_pseudogene Interval_62406 chr15 91971568 91972168 + 0 NA Intergenic Intergenic 11128 ENSMUSG00000116212.1 ENSMUSG00000116212 ENSMUST00000229625 Gm18979 processed_pseudogene Interval_152510 chr7 133683754 133684903 + 0 NA Intergenic Intergenic -4267 ENSMUSG00000030981.9 ENSMUSG00000030981 ENSMUST00000122136 Mmp21 protein_coding Interval_107402 chr3 107320212 107320617 + 0 NA Intergenic Intergenic 12687 ENSMUSG00000048109.10 ENSMUSG00000048109 ENSMUST00000197769 Rbm15 protein_coding Interval_60478 chr15 74174653 74174999 + 0 NA Intergenic Intergenic -80493 ENSMUSG00000082585.3 ENSMUSG00000082585 ENSMUST00000120421 Gm15387 processed_pseudogene Interval_94432 chr2 91182393 91183833 + 0 NA promoter-TSS (ENSMUSG00000040687.16) protein_coding-promoter-TSS (ENSMUSG00000040687.16) 11912 ENSMUSG00000002108.10 ENSMUSG00000002108 ENSMUST00000136234 Nr1h3 protein_coding Interval_53929 chr14 63470156 63471520 + 0 NA Intergenic Intergenic 4538 ENSMUSG00000114258.1 ENSMUSG00000114258 ENSMUST00000226020 Gm47074 processed_pseudogene Interval_44232 chr13 42570222 42570579 + 0 NA TTS (ENSMUSG00000113367.1) processed_pseudogene-TTS (ENSMUSG00000113367.1) 937 ENSMUSG00000113367.1 ENSMUSG00000113367 ENSMUST00000222839 Gm47125 processed_pseudogene Interval_103803 chr3 53102384 53103067 + 0 NA exon (ENSMUSG00000104735.1, exon 1 of 1) TEC-exon (ENSMUSG00000104735.1, exon 1 of 1) 3725 ENSMUSG00000104735.1 ENSMUSG00000104735 ENSMUST00000198178 C130075A20Rik TEC Interval_107791 chr3 115104863 115105277 + 0 NA intron (ENSMUSG00000027965.15, intron 4 of 4) protein_coding-intron (ENSMUSG00000027965.15, intron 4 of 5) 66979 ENSMUSG00000106510.1 ENSMUSG00000106510 ENSMUST00000198707 Gm18429 processed_pseudogene Interval_57463 chr15 11393225 11393563 + 0 NA intron (ENSMUSG00000022241.6, intron 3 of 18) protein_coding-intron (ENSMUSG00000022241.6, intron 3 of 18) 6207 ENSMUSG00000022241.6 ENSMUSG00000022241 ENSMUST00000226904 Tars protein_coding Interval_8122 chr1 135828886 135829206 + 0 NA promoter-TSS (ENSMUSG00000041782.14) protein_coding-promoter-TSS (ENSMUSG00000041782.14) -949 ENSMUSG00000041782.14 ENSMUSG00000041782 ENSMUST00000185756 Lad1 protein_coding Interval_107046 chr3 103140182 103141570 + 0 NA promoter-TSS (ENSMUSG00000007379.15) protein_coding-promoter-TSS (ENSMUSG00000007379.15) -8288 ENSMUSG00000007379.15 ENSMUSG00000007379 ENSMUST00000174486 Dennd2c protein_coding Interval_71805 chr17 26202937 26203769 + 0 NA exon (ENSMUSG00000024186.15, exon 2 of 17) protein_coding-exon (ENSMUSG00000024186.15, exon 2 of 17) -4101 ENSMUSG00000024186.15 ENSMUSG00000024186 ENSMUST00000139639 Rgs11 protein_coding Interval_17253 chr10 75303855 75304576 + 0 NA intron (ENSMUSG00000033444.14, intron 2 of 4) protein_coding-intron (ENSMUSG00000033444.14, intron 13 of 15) -18905 ENSMUSG00000020178.6 ENSMUSG00000020178 ENSMUST00000217703 Adora2a protein_coding Interval_1028 chr1 14201653 14202025 + 0 NA intron (ENSMUSG00000025932.14, intron 11 of 16) protein_coding-intron (ENSMUSG00000025932.14, intron 12 of 17) 19261 ENSMUSG00000095853.1 ENSMUSG00000095853 ENSMUST00000179783 Gm22616 miRNA Interval_49624 chr13 113617483 113619855 + 0 NA promoter-TSS (ENSMUSG00000042364.11) protein_coding-promoter-TSS (ENSMUSG00000042364.11) -4655 ENSMUSG00000042364.11 ENSMUSG00000042364 ENSMUST00000224883 Snx18 protein_coding Interval_114510 chr4 81727400 81727621 + 0 NA Intergenic Intergenic -15636 ENSMUSG00000087540.1 ENSMUSG00000087540 ENSMUST00000144875 Gm11412 lincRNA Interval_125609 chr5 72586147 72587711 + 0 NA exon (ENSMUSG00000060204.6, exon 1 of 3) protein_coding-exon (ENSMUSG00000060204.6, exon 1 of 3) 458 ENSMUSG00000060204.6 ENSMUSG00000060204 ENSMUST00000239348 Slc10a4l protein_coding Interval_20266 chr10 116534364 116534815 + 0 NA intron (ENSMUSG00000020166.15, intron 1 of 3) protein_coding-intron (ENSMUSG00000020166.15, intron 2 of 4) -2849 ENSMUSG00000093404.1 ENSMUSG00000093404 ENSMUST00000176664 Gm25190 miRNA Interval_69783 chr16 96301510 96302008 + 0 NA intron (ENSMUSG00000074892.9, intron 2 of 2) protein_coding-intron (ENSMUSG00000074892.9, intron 1 of 2) 28285 ENSMUSG00000074892.9 ENSMUSG00000074892 ENSMUST00000099497 B3galt5 protein_coding Interval_85362 chr19 25207084 25209675 + 0 NA Intergenic Intergenic -42163 ENSMUSG00000065634.1 ENSMUSG00000065634 ENSMUST00000083700 Gm24252 snoRNA Interval_3562 chr1 59606466 59607519 + 0 NA intron (ENSMUSG00000047361.16, intron 1 of 4) protein_coding-intron (ENSMUSG00000047361.16, intron 12 of 19) -19588 ENSMUSG00000089276.1 ENSMUSG00000089276 ENSMUST00000158651 Gm24545 misc_RNA Interval_95539 chr2 112013786 112013979 + 0 NA Intergenic Intergenic -1174 ENSMUSG00000108827.3 ENSMUSG00000108827 ENSMUST00000207169 Olfr1310 protein_coding Interval_167165 chr9 65762169 65762472 + 0 NA intron (ENSMUSG00000040524.9, intron 2 of 9) protein_coding-intron (ENSMUSG00000040524.9, intron 2 of 9) 35592 ENSMUSG00000040524.9 ENSMUSG00000040524 ENSMUST00000160747 Zfp609 protein_coding Interval_46938 chr13 73573605 73573797 + 0 NA intron (ENSMUSG00000021609.6, intron 14 of 14) protein_coding-intron (ENSMUSG00000021609.6, intron 14 of 14) 36954 ENSMUSG00000021609.6 ENSMUSG00000021609 ENSMUST00000022100 Slc6a3 protein_coding Interval_142179 chr6 137872151 137872650 + 0 NA Intergenic Intergenic 36843 ENSMUSG00000030225.11 ENSMUSG00000030225 ENSMUST00000204723 Dera protein_coding Interval_154955 chr8 25263987 25265170 + 0 NA Intergenic Intergenic 41692 ENSMUSG00000110140.1 ENSMUSG00000110140 ENSMUST00000209774 5430421F17Rik lincRNA Interval_67931 chr16 59643809 59644649 + 0 NA intron (ENSMUSG00000116894.1, intron 2 of 3) processed_transcript-intron (ENSMUSG00000116894.1, intron 1 of 2) 5020 ENSMUSG00000116894.1 ENSMUSG00000116894 ENSMUST00000232302 4930547E14Rik processed_transcript Interval_24055 chr11 29823792 29825714 + 0 NA exon (ENSMUSG00000078157.1, exon 1 of 1) protein_coding-exon (ENSMUSG00000078157.1, exon 1 of 1) 915 ENSMUSG00000078157.1 ENSMUSG00000078157 ENSMUST00000104962 Fem1al protein_coding Interval_33849 chr11 118975565 118976278 + 0 NA Intergenic Intergenic -12295 ENSMUSG00000046697.17 ENSMUSG00000046697 ENSMUST00000106273 Enpp7 protein_coding Interval_45166 chr13 52905204 52906300 + 0 NA intron (ENSMUSG00000021460.17, intron 2 of 9) protein_coding-intron (ENSMUSG00000021460.17, intron 3 of 9) 7194 ENSMUSG00000021460.17 ENSMUSG00000021460 ENSMUST00000151469 Auh protein_coding Interval_2961 chr1 51646765 51647186 + 0 NA Intergenic Intergenic 50925 ENSMUSG00000101741.1 ENSMUSG00000101741 ENSMUST00000186769 Gm28055 lincRNA Interval_20979 chr10 122967333 122967799 + 0 NA Intergenic Intergenic 18158 ENSMUSG00000065406.3 ENSMUSG00000065406 ENSMUST00000083472 Mirlet7i miRNA Interval_35674 chr12 27335629 27336040 + 0 NA exon (ENSMUSG00000063632.6, exon 1 of 1) protein_coding-exon (ENSMUSG00000063632.6, exon 1 of 1) 6740 ENSMUSG00000063632.6 ENSMUSG00000063632 ENSMUST00000079063 Sox11 protein_coding Interval_25576 chr11 49891158 49891599 + 0 NA Intergenic Intergenic -4353 ENSMUSG00000080487.1 ENSMUSG00000080487 ENSMUST00000116837 Gm23492 miRNA Interval_53520 chr14 58086958 58088138 + 0 NA intron (ENSMUSG00000021974.15, intron 2 of 2) protein_coding-intron (ENSMUSG00000021974.15, intron 2 of 2) 11041 ENSMUSG00000021974.15 ENSMUSG00000021974 ENSMUST00000166770 Fgf9 protein_coding Interval_134950 chr6 34051379 34052396 + 0 NA intron (ENSMUSG00000056215.13, intron 5 of 15) protein_coding-intron (ENSMUSG00000056215.13, intron 5 of 19) 22439 ENSMUSG00000056215.13 ENSMUSG00000056215 ENSMUST00000141078 Lrguk protein_coding Interval_153638 chr8 4192477 4193833 + 0 NA exon (ENSMUSG00000011832.16, exon 9 of 18) protein_coding-exon (ENSMUSG00000011832.16, exon 9 of 18) 13727 ENSMUSG00000086805.9 ENSMUSG00000086805 ENSMUST00000148353 4932443L11Rik antisense Interval_99732 chr2 164544560 164544942 + 0 NA Intergenic Intergenic -5779 ENSMUSG00000086179.1 ENSMUSG00000086179 ENSMUST00000151754 Gm14317 lincRNA Interval_16560 chr10 63686377 63686583 + 0 NA intron (ENSMUSG00000060843.11, intron 5 of 17) protein_coding-intron (ENSMUSG00000060843.11, intron 4 of 16) -134575 ENSMUSG00000060843.11 ENSMUSG00000060843 ENSMUST00000135474 Ctnna3 protein_coding Interval_64528 chr16 13084426 13086378 + 0 NA Intergenic Intergenic -46989 ENSMUSG00000022545.13 ENSMUSG00000022545 ENSMUST00000156393 Ercc4 protein_coding Interval_76062 chr17 74650141 74650742 + 0 NA intron (ENSMUSG00000024073.16, intron 54 of 72) protein_coding-intron (ENSMUSG00000024073.16, intron 54 of 72) 14719 ENSMUSG00000024073.16 ENSMUSG00000024073 ENSMUST00000182157 Birc6 protein_coding Interval_165010 chr9 43861422 43862276 + 0 NA Intergenic Intergenic 44153 ENSMUSG00000088044.1 ENSMUSG00000088044 ENSMUST00000157419 Gm23326 snRNA Interval_146250 chr7 44966151 44967082 + 0 NA promoter-TSS (ENSMUSG00000007783.10) protein_coding-promoter-TSS (ENSMUSG00000007783.10) -429 ENSMUSG00000007783.10 ENSMUSG00000007783 ENSMUST00000212255 Cpt1c protein_coding Interval_120300 chr4 145279036 145279963 + 0 NA intron (ENSMUSG00000028602.12, intron 11 of 12) protein_coding-intron (ENSMUSG00000028602.12, intron 10 of 12) -32629 ENSMUSG00000028599.10 ENSMUSG00000028599 ENSMUST00000143055 Tnfrsf1b protein_coding Interval_107640 chr3 109145051 109145963 + 0 NA intron (ENSMUSG00000040322.10, intron 2 of 4) protein_coding-intron (ENSMUSG00000040322.10, intron 2 of 9) 22345 ENSMUSG00000040322.10 ENSMUSG00000040322 ENSMUST00000140786 Slc25a24 protein_coding Interval_20004 chr10 111899119 111900583 + 0 NA Intergenic Intergenic 10837 ENSMUSG00000112628.1 ENSMUSG00000112628 ENSMUST00000217819 Gm47880 processed_pseudogene Interval_91290 chr2 37460665 37461275 + 0 NA intron (ENSMUSG00000035437.15, intron 1 of 4) protein_coding-intron (ENSMUSG00000035437.15, intron 1 of 25) -17799 ENSMUSG00000066798.3 ENSMUSG00000066798 ENSMUST00000112932 Zbtb6 protein_coding Interval_117473 chr4 123981394 123982348 + 0 NA Intergenic Intergenic 55637 ENSMUSG00000082515.1 ENSMUSG00000082515 ENSMUST00000118389 Gm12902 processed_pseudogene Interval_103555 chr3 49093954 49094280 + 0 NA Intergenic Intergenic 31739 ENSMUSG00000102263.1 ENSMUSG00000102263 ENSMUST00000194963 Gm31415 lincRNA Interval_36591 chr12 51012388 51013363 + 0 NA intron (ENSMUSG00000111986.1, intron 1 of 4) lincRNA-intron (ENSMUSG00000111986.1, intron 1 of 4) 7717 ENSMUSG00000111986.1 ENSMUSG00000111986 ENSMUST00000218606 1700008C04Rik lincRNA Interval_147118 chr7 63379746 63379992 + 0 NA intron (ENSMUSG00000097682.1, intron 7 of 9) lincRNA-intron (ENSMUSG00000097682.1, intron 7 of 9) 64660 ENSMUSG00000097682.1 ENSMUSG00000097682 ENSMUST00000181327 4930554H23Rik lincRNA Interval_97461 chr2 136779710 136779938 + 0 NA intron (ENSMUSG00000027273.13, intron 7 of 7) protein_coding-intron (ENSMUSG00000027273.13, intron 7 of 7) -35209 ENSMUSG00000082849.1 ENSMUSG00000082849 ENSMUST00000121662 Gm14053 processed_pseudogene Interval_65910 chr16 30186600 30188739 + 0 NA Intergenic Intergenic -7402 ENSMUSG00000101888.1 ENSMUSG00000101888 ENSMUST00000187479 1700025H01Rik lincRNA Interval_41517 chr12 115708238 115708632 + 0 NA Intergenic Intergenic -12641 ENSMUSG00000098336.1 ENSMUSG00000098336 ENSMUST00000184417 Mir6388 miRNA Interval_117697 chr4 125607438 125610343 + 0 NA intron (ENSMUSG00000001985.9, intron 1 of 15) protein_coding-intron (ENSMUSG00000001985.9, intron 1 of 15) 104141 ENSMUSG00000094403.1 ENSMUSG00000094403 ENSMUST00000102081 Mir692-2 miRNA Interval_127 GL456370.1 7894 8931 + 0 NA NA NA NA NA Interval_95507 chr2 110641249 110641831 + 0 NA intron (ENSMUSG00000041644.14, intron 11 of 13) protein_coding-intron (ENSMUSG00000041644.14, intron 12 of 14) 35816 ENSMUSG00000041644.14 ENSMUSG00000041644 ENSMUST00000146664 Slc5a12 protein_coding Interval_136970 chr6 65148287 65148475 + 0 NA Intergenic Intergenic -2616 ENSMUSG00000107968.1 ENSMUSG00000107968 ENSMUST00000203338 Gm44419 processed_pseudogene Interval_148717 chr7 84576954 84577224 + 0 NA exon (ENSMUSG00000097789.2, exon 3 of 3) protein_coding-exon (ENSMUSG00000097789.2, exon 3 of 3) -1247 ENSMUSG00000109513.1 ENSMUSG00000109513 ENSMUST00000208098 Gm44928 TEC Interval_166170 chr9 57224699 57225066 + 0 NA Intergenic Intergenic -11674 ENSMUSG00000070298.6 ENSMUSG00000070298 ENSMUST00000093837 Trcg1 protein_coding Interval_52763 chr14 49512944 49513544 + 0 NA intron (ENSMUSG00000021852.14, intron 1 of 2) protein_coding-intron (ENSMUSG00000021852.14, intron 1 of 7) 6925 ENSMUSG00000089416.1 ENSMUSG00000089416 ENSMUST00000158791 Gm22116 snRNA Interval_14612 chr10 37002321 37002544 + 0 NA TTS (ENSMUSG00000019777.16) protein_coding-TTS (ENSMUSG00000019777.16) 10666 ENSMUSG00000019777.16 ENSMUSG00000019777 ENSMUST00000123010 Hdac2 protein_coding Interval_52342 chr14 45287742 45288373 + 0 NA exon (ENSMUSG00000021831.9, exon 14 of 16) protein_coding-exon (ENSMUSG00000021831.9, exon 14 of 16) 13682 ENSMUSG00000021831.9 ENSMUSG00000021831 ENSMUST00000228777 Ero1l protein_coding Interval_163107 chr9 15311989 15312291 + 0 NA promoter-TSS (ENSMUSG00000077614.1) snoRNA-promoter-TSS (ENSMUSG00000077614.1) -412 ENSMUSG00000077614.1 ENSMUSG00000077614 ENSMUST00000104426 Gm25500 snoRNA Interval_86417 chr19 40340877 40341562 + 0 NA promoter-TSS (ENSMUSG00000025006.18) protein_coding-promoter-TSS (ENSMUSG00000025006.18) 35655 ENSMUSG00000025006.18 ENSMUSG00000025006 ENSMUST00000225293 Sorbs1 protein_coding Interval_89475 chr2 20894202 20894829 + 0 NA intron (ENSMUSG00000036591.16, intron 3 of 23) protein_coding-intron (ENSMUSG00000036591.16, intron 4 of 25) -34719 ENSMUSG00000036591.16 ENSMUSG00000036591 ENSMUST00000173654 Arhgap21 protein_coding Interval_116343 chr4 110019124 110020892 + 0 NA Intergenic Intergenic 41955 ENSMUSG00000047143.3 ENSMUSG00000047143 ENSMUST00000061187 Dmrta2 protein_coding Interval_25846 chr11 52109566 52110028 + 0 NA intron (ENSMUSG00000020349.4, intron 1 of 6) protein_coding-intron (ENSMUSG00000020349.4, intron 1 of 6) -8946 ENSMUSG00000020349.4 ENSMUSG00000020349 ENSMUST00000142939 Ppp2ca protein_coding Interval_39396 chr12 87147011 87148315 + 0 NA promoter-TSS (ENSMUSG00000021033.11) protein_coding-promoter-TSS (ENSMUSG00000021033.11) -189 ENSMUSG00000034126.5 ENSMUSG00000034126 ENSMUST00000222147 Pomt2 protein_coding Interval_104236 chr3 61444519 61445215 + 0 NA Intergenic Intergenic 17994 ENSMUSG00000098208.1 ENSMUSG00000098208 ENSMUST00000182720 Gm8349 processed_pseudogene Interval_103691 chr3 51652341 51653323 + 0 NA Intergenic Intergenic -15904 ENSMUSG00000104166.1 ENSMUSG00000104166 ENSMUST00000194675 Gm38247 processed_pseudogene Interval_105808 chr3 89436237 89437571 + 0 NA exon (ENSMUSG00000042613.9, exon 1 of 6) protein_coding-exon (ENSMUSG00000042613.9, exon 1 of 6) 150 ENSMUSG00000042613.9 ENSMUSG00000042613 ENSMUST00000145753 Pbxip1 protein_coding Interval_100713 chr2 171902750 171903438 + 0 NA Intergenic Intergenic 59037 ENSMUSG00000086823.7 ENSMUSG00000086823 ENSMUST00000125465 1700028P15Rik processed_transcript Interval_11067 chr1 179124870 179125611 + 0 NA intron (ENSMUSG00000055067.15, intron 5 of 11) protein_coding-intron (ENSMUSG00000055067.15, intron 2 of 8) -207626 ENSMUSG00000089713.1 ENSMUSG00000089713 ENSMUST00000162545 Gm16564 antisense Interval_51948 chr14 34178506 34178873 + 0 NA Intergenic Intergenic -2380 ENSMUSG00000115673.1 ENSMUSG00000115673 ENSMUST00000228606 Gm18884 processed_pseudogene Interval_165652 chr9 50697758 50699431 + 0 NA promoter-TSS (ENSMUSG00000032064.17) protein_coding-promoter-TSS (ENSMUSG00000032064.17) -823 ENSMUSG00000032064.17 ENSMUSG00000032064 ENSMUST00000118707 Dixdc1 protein_coding Interval_147431 chr7 67061568 67062365 + 0 NA intron (ENSMUSG00000058145.16, intron 15 of 21) protein_coding-intron (ENSMUSG00000058145.16, intron 15 of 22) -20877 ENSMUSG00000108833.1 ENSMUSG00000108833 ENSMUST00000207587 Gm17909 processed_pseudogene Interval_51917 chr14 33931862 33933276 + 0 NA exon (ENSMUSG00000021943.7, exon 2 of 3) protein_coding-exon (ENSMUSG00000021943.7, exon 2 of 3) -8470 ENSMUSG00000072625.1 ENSMUSG00000072625 ENSMUST00000100720 Gdf2 protein_coding Interval_24258 chr11 31831369 31831776 + 0 NA Intergenic Intergenic -1088 ENSMUSG00000086335.1 ENSMUSG00000086335 ENSMUST00000132857 Gm12107 lincRNA Interval_166520 chr9 60418967 60419915 + 0 NA promoter-TSS (ENSMUSG00000088550.1) snoRNA-promoter-TSS (ENSMUSG00000088550.1) -422 ENSMUSG00000088550.1 ENSMUSG00000088550 ENSMUST00000157925 Gm22099 snoRNA Interval_167342 chr9 67588613 67590478 + 0 NA Intergenic Intergenic -110636 ENSMUSG00000111819.1 ENSMUSG00000111819 ENSMUST00000216655 Gm47110 processed_pseudogene Interval_109270 chr3 138517727 138518449 + 0 NA Intergenic Intergenic -8333 ENSMUSG00000088373.3 ENSMUSG00000088373 ENSMUST00000157748 Mir1956 miRNA Interval_6810 chr1 119742547 119742746 + 0 NA TTS (ENSMUSG00000026384.13) protein_coding-TTS (ENSMUSG00000026384.13) -26653 ENSMUSG00000026384.13 ENSMUSG00000026384 ENSMUST00000163621 Ptpn4 protein_coding Interval_44417 chr13 44729820 44731336 + 0 NA promoter-TSS (ENSMUSG00000038518.15) protein_coding-promoter-TSS (ENSMUSG00000038518.15) -792 ENSMUSG00000038518.15 ENSMUSG00000038518 ENSMUST00000173003 Jarid2 protein_coding Interval_68328 chr16 73234280 73234503 + 0 NA intron (ENSMUSG00000116976.1, intron 5 of 5) processed_transcript-intron (ENSMUSG00000116976.1, intron 1 of 4) 162016 ENSMUSG00000116976.1 ENSMUSG00000116976 ENSMUST00000231486 4930500H12Rik processed_transcript Interval_69833 chr16 97286878 97287163 + 0 NA Intergenic Intergenic -118249 ENSMUSG00000116686.1 ENSMUSG00000116686 ENSMUST00000232315 Gm49681 processed_pseudogene Interval_84846 chr19 17422947 17423822 + 0 NA Intergenic Intergenic 25947 ENSMUSG00000024712.9 ENSMUSG00000024712 ENSMUST00000146171 Rfk protein_coding Interval_52225 chr14 40863198 40863659 + 0 NA intron (ENSMUSG00000037833.14, intron 3 of 3) protein_coding-intron (ENSMUSG00000037833.14, intron 3 of 7) 29838 ENSMUSG00000037833.14 ENSMUSG00000037833 ENSMUST00000225854 Sh2d4b protein_coding Interval_118809 chr4 133829814 133830216 + 0 NA Intergenic Intergenic 13595 ENSMUSG00000084789.1 ENSMUSG00000084789 ENSMUST00000129875 Gm12974 lincRNA Interval_86583 chr19 41872462 41872703 + 0 NA intron (ENSMUSG00000035049.4, intron 25 of 33) protein_coding-intron (ENSMUSG00000035049.4, intron 25 of 33) 23591 ENSMUSG00000035049.4 ENSMUSG00000035049 ENSMUST00000038677 Rrp12 protein_coding Interval_160147 chr8 106713050 106713346 + 0 NA intron (ENSMUSG00000041949.6, intron 7 of 13) protein_coding-intron (ENSMUSG00000041949.6, intron 7 of 17) 30083 ENSMUSG00000041949.6 ENSMUSG00000041949 ENSMUST00000211979 Tango6 protein_coding Interval_65828 chr16 29615211 29615416 + 0 NA TTS (ENSMUSG00000038084.16) protein_coding-TTS (ENSMUSG00000038084.16) 28299 ENSMUSG00000038084.16 ENSMUSG00000038084 ENSMUST00000160101 Opa1 protein_coding Interval_64436 chr16 11346287 11346967 + 0 NA intron (ENSMUSG00000071669.14, intron 1 of 20) protein_coding-intron (ENSMUSG00000071669.14, intron 1 of 7) 23719 ENSMUSG00000071669.14 ENSMUSG00000071669 ENSMUST00000134941 Snx29 protein_coding Interval_13666 chr10 20813359 20813582 + 0 NA intron (ENSMUSG00000111091.1, intron 3 of 4) lincRNA-intron (ENSMUSG00000111091.1, intron 3 of 4) 57353 ENSMUSG00000111091.1 ENSMUSG00000111091 ENSMUST00000213510 Gm48651 lincRNA Interval_26515 chr11 58306884 58308246 + 0 NA exon (ENSMUSG00000037243.17, exon 2 of 12) protein_coding-exon (ENSMUSG00000037243.17, exon 2 of 12) 496 ENSMUSG00000037243.17 ENSMUSG00000037243 ENSMUST00000049353 Zfp692 protein_coding Interval_142650 chr6 144707025 144707243 + 0 NA intron (ENSMUSG00000041540.16, intron 1 of 6) protein_coding-intron (ENSMUSG00000041540.16, intron 1 of 13) -13777 ENSMUSG00000086282.1 ENSMUSG00000086282 ENSMUST00000155562 Sox5os4 antisense Interval_1516 chr1 24594797 24595652 + 0 NA exon (ENSMUSG00000099997.1, exon 1 of 1) processed_pseudogene-exon (ENSMUSG00000099997.1, exon 1 of 1) 199 ENSMUSG00000099997.1 ENSMUSG00000099997 ENSMUST00000187481 Tubb4b-ps2 processed_pseudogene Interval_78682 chr18 17217765 17218267 + 0 NA Intergenic Intergenic 17437 ENSMUSG00000117460.1 ENSMUSG00000117460 ENSMUST00000234739 4921533I20Rik transcribed_processed_pseudogene Interval_170224 chr9 106300124 106300619 + 0 NA promoter-TSS (ENSMUSG00000023345.17) protein_coding-promoter-TSS (ENSMUSG00000023345.17) 18761 ENSMUSG00000023345.17 ENSMUSG00000023345 ENSMUST00000186366 Poc1a protein_coding Interval_147690 chr7 72024940 72025337 + 0 NA intron (ENSMUSG00000108800.1, intron 2 of 2) lincRNA-intron (ENSMUSG00000108800.1, intron 2 of 2) -63120 ENSMUSG00000108480.1 ENSMUSG00000108480 ENSMUST00000205873 Gm36633 lincRNA Interval_149351 chr7 97637853 97638269 + 0 NA intron (ENSMUSG00000035623.14, intron 3 of 14) protein_coding-intron (ENSMUSG00000035623.14, intron 3 of 15) 7051 ENSMUSG00000086433.1 ENSMUSG00000086433 ENSMUST00000126902 Rsf1os1 antisense Interval_49661 chr13 113850552 113851712 + 0 NA intron (ENSMUSG00000042348.10, intron 1 of 3) protein_coding-intron (ENSMUSG00000042348.10, intron 1 of 4) 56539 ENSMUSG00000042348.10 ENSMUSG00000042348 ENSMUST00000224068 Arl15 protein_coding Interval_42313 chr13 12014312 12014674 + 0 NA intron (ENSMUSG00000021313.16, intron 1 of 2) protein_coding-intron (ENSMUSG00000021313.16, intron 1 of 104) 37562 ENSMUSG00000112947.1 ENSMUSG00000112947 ENSMUST00000220599 Gm47493 TEC Interval_65164 chr16 20289969 20290246 + 0 NA intron (ENSMUSG00000033918.16, intron 1 of 6) protein_coding-intron (ENSMUSG00000033918.16, intron 4 of 9) 12272 ENSMUSG00000033918.16 ENSMUSG00000033918 ENSMUST00000153275 Parl protein_coding Interval_116487 chr4 114593407 114593619 + 0 NA intron (ENSMUSG00000070867.4, intron 4 of 6) protein_coding-intron (ENSMUSG00000070867.4, intron 4 of 6) 79827 ENSMUSG00000100998.1 ENSMUSG00000100998 ENSMUST00000189251 Gm28864 lincRNA Interval_132499 chr5 145498802 145499064 + 0 NA Intergenic Intergenic 8121 ENSMUSG00000105270.1 ENSMUSG00000105270 ENSMUST00000197875 Gm42863 TEC Interval_41794 chr12 119352347 119353324 + 0 NA exon (ENSMUSG00000113192.1, exon 1 of 1) processed_pseudogene-exon (ENSMUSG00000113192.1, exon 1 of 1) 317 ENSMUSG00000113192.1 ENSMUSG00000113192 ENSMUST00000222541 Gm18032 processed_pseudogene Interval_15816 chr10 57532030 57532973 + 0 NA promoter-TSS (ENSMUSG00000019877.10) protein_coding-promoter-TSS (ENSMUSG00000019877.10) -91 ENSMUSG00000019877.10 ENSMUSG00000019877 ENSMUST00000164400 Serinc1 protein_coding Interval_100971 chr2 173747236 173748007 + 0 NA intron (ENSMUSG00000054455.5, intron 1 of 5) protein_coding-intron (ENSMUSG00000054455.5, intron 1 of 5) -2317 ENSMUSG00000118399.1 ENSMUSG00000118399 ENSMUST00000238291 Gm18917 processed_pseudogene Interval_21940 chr11 5323561 5325816 + 0 NA intron (ENSMUSG00000041961.14, intron 3 of 8) protein_coding-intron (ENSMUSG00000041961.14, intron 2 of 8) 50603 ENSMUSG00000118486.1 ENSMUSG00000118486 ENSMUST00000238466 Gm30172 unitary_pseudogene Interval_81371 chr18 59684696 59685058 + 0 NA Intergenic Intergenic 53480 ENSMUSG00000089285.1 ENSMUSG00000089285 ENSMUST00000158660 Gm26028 misc_RNA Interval_59968 chr15 62401585 62402315 + 0 NA Intergenic Intergenic -166025 ENSMUSG00000115862.1 ENSMUSG00000115862 ENSMUST00000230029 Gm41333 lincRNA Interval_123737 chr5 35035876 35036550 + 0 NA intron (ENSMUSG00000029101.16, intron 15 of 15) protein_coding-intron (ENSMUSG00000029101.16, intron 16 of 16) -2768 ENSMUSG00000107040.1 ENSMUSG00000107040 ENSMUST00000202914 Gm43791 antisense Interval_55312 chr14 82293829 82295118 + 0 NA Intergenic Intergenic 90056 ENSMUSG00000089266.1 ENSMUSG00000089266 ENSMUST00000158641 Gm22891 snRNA Interval_133350 chr6 3556769 3557934 + 0 NA intron (ENSMUSG00000001376.17, intron 16 of 26) protein_coding-intron (ENSMUSG00000001376.17, intron 16 of 27) -26463 ENSMUSG00000107094.1 ENSMUSG00000107094 ENSMUST00000202850 Gm43294 TEC Interval_108762 chr3 131117923 131118367 + 0 NA TTS (ENSMUSG00000027985.14) protein_coding-TTS (ENSMUSG00000027985.14) 4331 ENSMUSG00000027985.14 ENSMUSG00000027985 ENSMUST00000198624 Lef1 protein_coding Interval_13728 chr10 21493950 21495473 + 0 NA Intergenic Intergenic -49075 ENSMUSG00000112738.1 ENSMUSG00000112738 ENSMUST00000219604 Gm48386 processed_pseudogene Interval_106548 chr3 97162006 97162472 + 0 NA intron (ENSMUSG00000028093.15, intron 1 of 3) protein_coding-intron (ENSMUSG00000028093.15, intron 1 of 9) 3143 ENSMUSG00000028093.15 ENSMUSG00000028093 ENSMUST00000198329 Acp6 protein_coding Interval_152025 chr7 128356856 128357878 + 0 NA Intergenic Intergenic 16900 ENSMUSG00000108608.1 ENSMUSG00000108608 ENSMUST00000205523 Gm6916 transcribed_processed_pseudogene Interval_72523 chr17 30438625 30440062 + 0 NA intron (ENSMUSG00000062202.14, intron 6 of 6) protein_coding-intron (ENSMUSG00000062202.14, intron 6 of 11) -11055 ENSMUSG00000117835.1 ENSMUSG00000117835 ENSMUST00000237696 Gm50250 processed_transcript Interval_132224 chr5 143423391 143424242 + 0 NA Intergenic Intergenic -14577 ENSMUSG00000105206.1 ENSMUSG00000105206 ENSMUST00000198525 Gm4870 processed_pseudogene Interval_35992 chr12 33165251 33167055 + 0 NA intron (ENSMUSG00000020564.17, intron 2 of 12) protein_coding-intron (ENSMUSG00000020564.17, intron 1 of 2) -18557 ENSMUSG00000052125.16 ENSMUSG00000052125 ENSMUST00000172344 F730043M19Rik bidirectional_promoter_lncRNA Interval_119233 chr4 136346124 136347074 + 0 NA exon (ENSMUSG00000066037.14, exon 11 of 11) protein_coding-exon (ENSMUSG00000066037.14, exon 11 of 11) 2842 ENSMUSG00000098155.1 ENSMUSG00000098155 ENSMUST00000183225 Gm27022 lincRNA Interval_61192 chr15 79892524 79895504 + 0 NA TTS (ENSMUSG00000115902.1) antisense-TTS (ENSMUSG00000115902.1) 4482 ENSMUSG00000115902.1 ENSMUSG00000115902 ENSMUST00000230175 AC113595.1 antisense Interval_70829 chr17 15155426 15156246 + 0 NA intron (ENSMUSG00000116655.1, intron 1 of 3) lincRNA-intron (ENSMUSG00000116655.1, intron 1 of 3) 3677 ENSMUSG00000116655.1 ENSMUSG00000116655 ENSMUST00000231330 Gm35455 lincRNA Interval_72099 chr17 28029419 28029943 + 0 NA intron (ENSMUSG00000024219.16, intron 11 of 23) protein_coding-intron (ENSMUSG00000024219.16, intron 12 of 24) -11094 ENSMUSG00000024219.16 ENSMUSG00000024219 ENSMUST00000232769 Anks1 protein_coding Interval_174244 chrX 140625042 140625754 + 0 NA Intergenic Intergenic -3262 ENSMUSG00000081408.1 ENSMUSG00000081408 ENSMUST00000118891 Gm15047 processed_pseudogene Interval_55776 chr14 99931850 99932313 + 0 NA intron (ENSMUSG00000072294.5, intron 6 of 7) protein_coding-intron (ENSMUSG00000072294.5, intron 5 of 6) -31690 ENSMUSG00000072294.5 ENSMUSG00000072294 ENSMUST00000226544 Klf12 protein_coding Interval_50843 chr14 20161787 20162074 + 0 NA intron (ENSMUSG00000023243.9, intron 1 of 4) protein_coding-intron (ENSMUSG00000023243.9, intron 1 of 4) -16636 ENSMUSG00000023243.9 ENSMUSG00000023243 ENSMUST00000225552 Kcnk5 protein_coding Interval_168898 chr9 88466921 88467423 + 0 NA intron (ENSMUSG00000032423.12, intron 3 of 3) protein_coding-intron (ENSMUSG00000032423.12, intron 6 of 11) -10556 ENSMUSG00000092541.7 ENSMUSG00000092541 ENSMUST00000154586 Gm20537 protein_coding Interval_87716 chr19 55358538 55358897 + 0 NA intron (ENSMUSG00000024983.10, intron 3 of 7) protein_coding-intron (ENSMUSG00000024983.10, intron 3 of 7) 42390 ENSMUSG00000024983.10 ENSMUSG00000024983 ENSMUST00000224396 Vti1a protein_coding Interval_44924 chr13 50026966 50027539 + 0 NA Intergenic Intergenic 23753 ENSMUSG00000113312.1 ENSMUSG00000113312 ENSMUST00000220549 Gm48052 processed_pseudogene Interval_79417 chr18 31759192 31761135 + 0 NA promoter-TSS (ENSMUSG00000041915.9) protein_coding-promoter-TSS (ENSMUSG00000041915.9) 337 ENSMUSG00000041915.9 ENSMUSG00000041915 ENSMUST00000234191 Ammecr1l protein_coding Interval_95236 chr2 105081480 105082985 + 0 NA intron (ENSMUSG00000074987.9, intron 5 of 6) antisense-intron (ENSMUSG00000074987.9, intron 2 of 3) -9786 ENSMUSG00000079175.1 ENSMUSG00000079175 ENSMUST00000111107 Gm11060 protein_coding Interval_11274 chr1 180639777 180642380 + 0 NA promoter-TSS (ENSMUSG00000058729.13) protein_coding-promoter-TSS (ENSMUSG00000058729.13) -39809 ENSMUSG00000058729.13 ENSMUSG00000058729 ENSMUST00000194847 Lin9 protein_coding Interval_162582 chr9 5095704 5095930 + 0 NA Intergenic Intergenic -15582 ENSMUSG00000084690.1 ENSMUSG00000084690 ENSMUST00000122741 Gm24896 snoRNA Interval_113570 chr4 56762795 56762982 + 0 NA promoter-TSS (ENSMUSG00000080370.1) snoRNA-promoter-TSS (ENSMUSG00000080370.1) -847 ENSMUSG00000080370.1 ENSMUSG00000080370 ENSMUST00000116720 Gm22952 snoRNA Interval_23726 chr11 25406357 25406598 + 0 NA Intergenic Intergenic 105214 ENSMUSG00000086439.1 ENSMUSG00000086439 ENSMUST00000145127 Gm12069 lincRNA Interval_26236 chr11 55347675 55348542 + 0 NA Intergenic Intergenic -35851 ENSMUSG00000055333.14 ENSMUSG00000055333 ENSMUST00000108864 Fat2 protein_coding Interval_65360 chr16 21832134 21833016 + 0 NA intron (ENSMUSG00000033618.7, intron 1 of 13) protein_coding-intron (ENSMUSG00000033618.7, intron 2 of 14) 3980 ENSMUSG00000116862.1 ENSMUSG00000116862 ENSMUST00000232439 Gm49607 lincRNA Interval_108413 chr3 126821456 126821640 + 0 NA intron (ENSMUSG00000053819.16, intron 16 of 20) protein_coding-intron (ENSMUSG00000053819.16, intron 2 of 5) 75415 ENSMUSG00000105553.1 ENSMUSG00000105553 ENSMUST00000196636 Gm42514 TEC Interval_89099 chr2 16312531 16312762 + 0 NA Intergenic Intergenic -289221 ENSMUSG00000103865.1 ENSMUSG00000103865 ENSMUST00000193596 Gm37416 TEC Interval_153287 chr7 143328427 143328631 + 0 NA intron (ENSMUSG00000101360.2, intron 2 of 2) protein_coding-intron (ENSMUSG00000009545.14, intron 11 of 15) -15908 ENSMUSG00000103791.1 ENSMUSG00000103791 ENSMUST00000192896 Gm38095 TEC Interval_41144 chr12 111469465 111469984 + 0 NA intron (ENSMUSG00000113029.1, intron 2 of 2) antisense-intron (ENSMUSG00000113029.1, intron 2 of 2) 16099 ENSMUSG00000010529.6 ENSMUSG00000010529 ENSMUST00000010673 Gm266 protein_coding Interval_88624 chr2 7080796 7081380 + 0 NA exon (ENSMUSG00000002107.18, exon 1 of 2) protein_coding-exon (ENSMUSG00000002107.18, exon 1 of 2) -4674 ENSMUSG00000065824.1 ENSMUSG00000065824 ENSMUST00000083890 Gm26315 misc_RNA Interval_130840 chr5 131177153 131178524 + 0 NA intron (ENSMUSG00000034040.16, intron 1 of 1) protein_coding-intron (ENSMUSG00000034040.16, intron 1 of 10) -43127 ENSMUSG00000106710.1 ENSMUSG00000106710 ENSMUST00000202871 Gm43166 sense_intronic Interval_163989 chr9 30448577 30450647 + 0 NA intron (ENSMUSG00000031993.7, intron 4 of 5) protein_coding-intron (ENSMUSG00000031993.7, intron 8 of 10) 20367 ENSMUSG00000031993.7 ENSMUSG00000031993 ENSMUST00000216545 Snx19 protein_coding Interval_52982 chr14 52602273 52602482 + 0 NA Intergenic Intergenic -4930 ENSMUSG00000106382.1 ENSMUSG00000106382 ENSMUST00000199078 Trav4-1 TR_V_pseudogene Interval_45845 chr13 58516082 58516913 + 0 NA Intergenic Intergenic -29531 ENSMUSG00000114234.1 ENSMUSG00000114234 ENSMUST00000223882 Gm3131 processed_pseudogene Interval_74585 chr17 53545765 53547160 + 0 NA Intergenic Intergenic -7011 ENSMUSG00000044957.3 ENSMUSG00000044957 ENSMUST00000056198 Pp2d1 protein_coding Interval_4835 chr1 80106290 80106555 + 0 NA Intergenic Intergenic 7800 ENSMUSG00000099753.1 ENSMUSG00000099753 ENSMUST00000186421 Gm28058 processed_pseudogene Interval_160358 chr8 108729098 108730249 + 0 NA intron (ENSMUSG00000038872.10, intron 1 of 9) protein_coding-intron (ENSMUSG00000038872.10, intron 1 of 9) -7920 ENSMUSG00000104292.1 ENSMUSG00000104292 ENSMUST00000191614 Gm38042 TEC Interval_61647 chr15 83142310 83143183 + 0 NA intron (ENSMUSG00000041815.14, intron 1 of 1) protein_coding-intron (ENSMUSG00000041815.14, intron 1 of 8) 6590 ENSMUSG00000041815.14 ENSMUSG00000041815 ENSMUST00000150926 Poldip3 protein_coding Interval_74196 chr17 47060004 47060569 + 0 NA Intergenic Intergenic -17247 ENSMUSG00000062472.6 ENSMUSG00000062472 ENSMUST00000075152 Gm4945 processed_pseudogene Interval_8715 chr1 149822984 149823406 + 0 NA Intergenic Intergenic -18335 ENSMUSG00000077516.1 ENSMUSG00000077516 ENSMUST00000104328 n-R5s219 rRNA Interval_117808 chr4 126332336 126332997 + 0 NA TTS (ENSMUSG00000028842.15) protein_coding-TTS (ENSMUSG00000028842.15) -7036 ENSMUSG00000028845.15 ENSMUSG00000028845 ENSMUST00000141990 Tekt2 protein_coding Interval_69609 chr16 94593438 94593699 + 0 NA intron (ENSMUSG00000022897.15, intron 1 of 5) protein_coding-intron (ENSMUSG00000022897.15, intron 1 of 11) 22661 ENSMUSG00000022897.15 ENSMUSG00000022897 ENSMUST00000134383 Dyrk1a protein_coding Interval_45093 chr13 52070751 52071254 + 0 NA Intergenic Intergenic 25640 ENSMUSG00000113090.1 ENSMUSG00000113090 ENSMUST00000222306 Gm48190 lincRNA Interval_154891 chr8 24841346 24842009 + 0 NA intron (ENSMUSG00000037437.18, intron 3 of 4) protein_coding-intron (ENSMUSG00000037437.18, intron 18 of 19) -17611 ENSMUSG00000031554.18 ENSMUSG00000031554 ENSMUST00000118419 Adam5 protein_coding Interval_40650 chr12 106445962 106447843 + 0 NA intron (ENSMUSG00000092066.1, intron 1 of 3) lincRNA-intron (ENSMUSG00000092066.1, intron 1 of 3) 764 ENSMUSG00000092066.1 ENSMUSG00000092066 ENSMUST00000167922 1700121N20Rik lincRNA Interval_9752 chr1 161758917 161759274 + 0 NA Intergenic Intergenic 13039 ENSMUSG00000102399.1 ENSMUSG00000102399 ENSMUST00000195878 Gm5049 processed_pseudogene Interval_87067 chr19 45920522 45920838 + 0 NA TTS (ENSMUSG00000039901.10) protein_coding-TTS (ENSMUSG00000039901.10) 15749 ENSMUSG00000039901.10 ENSMUSG00000039901 ENSMUST00000236730 Armh3 protein_coding Interval_128267 chr5 112179367 112180970 + 0 NA Intergenic Intergenic 23931 ENSMUSG00000104538.1 ENSMUSG00000104538 ENSMUST00000197688 1700016B01Rik lincRNA Interval_112500 chr4 41631401 41631827 + 0 NA promoter-TSS (ENSMUSG00000061322.15) protein_coding-promoter-TSS (ENSMUSG00000061322.15) -30 ENSMUSG00000061322.15 ENSMUSG00000061322 ENSMUST00000119127 Dnaic1 protein_coding Interval_140648 chr6 120302812 120303187 + 0 NA Intergenic Intergenic -8440 ENSMUSG00000041372.10 ENSMUSG00000041372 ENSMUST00000212457 B4galnt3 protein_coding Interval_115877 chr4 105505659 105506505 + 0 NA Intergenic Intergenic -5150 ENSMUSG00000083128.1 ENSMUSG00000083128 ENSMUST00000120700 Gm12723 processed_pseudogene Interval_127779 chr5 107723762 107725964 + 0 NA promoter-TSS (ENSMUSG00000029275.18) protein_coding-promoter-TSS (ENSMUSG00000029275.18) 1173 ENSMUSG00000029275.18 ENSMUSG00000029275 ENSMUST00000159263 Gfi1 protein_coding Interval_133810 chr6 12554753 12555807 + 0 NA promoter-TSS (ENSMUSG00000032625.14) protein_coding-promoter-TSS (ENSMUSG00000032625.14) -10238 ENSMUSG00000083794.1 ENSMUSG00000083794 ENSMUST00000118647 Gm16123 processed_pseudogene Interval_96920 chr2 129535122 129535530 + 0 NA intron (ENSMUSG00000043727.5, intron 1 of 6) protein_coding-intron (ENSMUSG00000043727.5, intron 1 of 6) 1276 ENSMUSG00000043727.5 ENSMUSG00000043727 ENSMUST00000050309 F830045P16Rik protein_coding Interval_10193 chr1 167012489 167013331 + 0 NA intron (ENSMUSG00000060568.14, intron 1 of 2) protein_coding-intron (ENSMUSG00000060568.14, intron 1 of 2) 11493 ENSMUSG00000060568.14 ENSMUSG00000060568 ENSMUST00000128373 Fam78b protein_coding Interval_98392 chr2 152020019 152020961 + 0 NA Intergenic Intergenic 20625 ENSMUSG00000027463.14 ENSMUSG00000027463 ENSMUST00000109858 Slc52a3 protein_coding Interval_50679 chr14 18080839 18081051 + 0 NA Intergenic Intergenic -14779 ENSMUSG00000114517.1 ENSMUSG00000114517 ENSMUST00000226070 Gm19290 processed_pseudogene Interval_1757 chr1 33573799 33574010 + 0 NA intron (ENSMUSG00000026134.11, intron 7 of 13) protein_coding-intron (ENSMUSG00000026134.11, intron 7 of 13) 42928 ENSMUSG00000102714.1 ENSMUSG00000102714 ENSMUST00000192891 Gm37618 TEC Interval_161132 chr8 117684384 117684689 + 0 NA intron (ENSMUSG00000110151.2, intron 3 of 5) lincRNA-intron (ENSMUSG00000110151.2, intron 4 of 7) 2686 ENSMUSG00000110151.2 ENSMUSG00000110151 ENSMUST00000212223 Gm38416 lincRNA Interval_148745 chr7 85035112 85035310 + 0 NA TTS (ENSMUSG00000092530.1) unprocessed_pseudogene-TTS (ENSMUSG00000092530.1) 1184 ENSMUSG00000092530.1 ENSMUSG00000092530 ENSMUST00000173690 Vmn2r-ps64 unprocessed_pseudogene Interval_138899 chr6 93236064 93236839 + 0 NA intron (ENSMUSG00000097462.7, intron 2 of 5) antisense-intron (ENSMUSG00000097462.7, intron 3 of 9) -5269 ENSMUSG00000107655.1 ENSMUSG00000107655 ENSMUST00000203784 Gm44220 TEC Interval_129166 chr5 117946761 117947915 + 0 NA intron (ENSMUSG00000029361.18, intron 24 of 27) protein_coding-intron (ENSMUSG00000029361.18, intron 25 of 28) -7820 ENSMUSG00000098072.1 ENSMUSG00000098072 ENSMUST00000182216 Gm26995 antisense Interval_161950 chr8 123999770 124000103 + 0 NA intron (ENSMUSG00000038697.15, intron 4 of 4) protein_coding-intron (ENSMUSG00000038697.15, intron 4 of 4) -5369 ENSMUSG00000110612.1 ENSMUSG00000110612 ENSMUST00000211825 Gm17827 processed_pseudogene Interval_19158 chr10 95217886 95218815 + 0 NA intron (ENSMUSG00000045867.10, intron 2 of 2) protein_coding-intron (ENSMUSG00000045867.10, intron 2 of 2) 57989 ENSMUSG00000112682.1 ENSMUSG00000112682 ENSMUST00000220149 Gm48874 TEC Interval_134861 chr6 32769713 32770017 + 0 NA Intergenic Intergenic -17577 ENSMUSG00000106873.1 ENSMUSG00000106873 ENSMUST00000202626 BC049739 lincRNA Interval_143970 chr7 18692776 18693228 + 0 NA Intergenic Intergenic -1850 ENSMUSG00000109571.1 ENSMUSG00000109571 ENSMUST00000207768 Gm44655 unprocessed_pseudogene Interval_116062 chr4 107349087 107349736 + 0 NA intron (ENSMUSG00000086041.1, intron 1 of 1) protein_coding-intron (ENSMUSG00000057375.13, intron 8 of 9) 1942 ENSMUSG00000086041.1 ENSMUSG00000086041 ENSMUST00000156265 Gm12869 antisense Interval_25032 chr11 43399476 43399720 + 0 NA Intergenic Intergenic 14116 ENSMUSG00000084889.1 ENSMUSG00000084889 ENSMUST00000153791 Gm12148 lincRNA Interval_129638 chr5 121471909 121472918 + 0 NA promoter-TSS (ENSMUSG00000082760.2) processed_pseudogene-promoter-TSS (ENSMUSG00000082760.2) -25 ENSMUSG00000082760.2 ENSMUSG00000082760 ENSMUST00000122095 Gm15546 processed_pseudogene Interval_16257 chr10 61750076 61750765 + 0 NA intron (ENSMUSG00000020086.6, intron 4 of 8) protein_coding-intron (ENSMUSG00000020086.6, intron 4 of 8) 22272 ENSMUSG00000020085.15 ENSMUSG00000020085 ENSMUST00000140664 Aifm2 protein_coding Interval_106409 chr3 95985170 95986587 + 0 NA Intergenic Intergenic 9920 ENSMUSG00000015745.9 ENSMUSG00000015745 ENSMUST00000157043 Plekho1 protein_coding Interval_5447 chr1 88847549 88847736 + 0 NA Intergenic Intergenic 27768 ENSMUSG00000099848.1 ENSMUSG00000099848 ENSMUST00000185425 Gm29337 lincRNA Interval_100643 chr2 170683199 170684154 + 0 NA Intergenic Intergenic -21211 ENSMUSG00000085158.1 ENSMUSG00000085158 ENSMUST00000147141 Gm14264 lincRNA Interval_16912 chr10 69845530 69846334 + 0 NA intron (ENSMUSG00000069601.14, intron 8 of 42) protein_coding-intron (ENSMUSG00000069601.14, intron 1 of 16) -279571 ENSMUSG00000112729.1 ENSMUSG00000112729 ENSMUST00000220152 Gm46231 processed_pseudogene Interval_75611 chr17 69276802 69278190 + 0 NA promoter-TSS (ENSMUSG00000100572.1) antisense-promoter-TSS (ENSMUSG00000100572.1) -288 ENSMUSG00000100572.1 ENSMUSG00000100572 ENSMUST00000187090 2410021H03Rik antisense Interval_96577 chr2 125866055 125866684 + 0 NA exon (ENSMUSG00000027207.15, exon 1 of 10) protein_coding-intron (ENSMUSG00000027207.15, intron 1 of 5) 126 ENSMUSG00000027207.15 ENSMUSG00000027207 ENSMUST00000110454 Galk2 protein_coding Interval_146385 chr7 45628334 45629354 + 0 NA TTS (ENSMUSG00000064158.6) protein_coding-TTS (ENSMUSG00000064158.6) 1356 ENSMUSG00000044562.12 ENSMUSG00000044562 ENSMUST00000057927 Rasip1 protein_coding Interval_111343 chr4 19499669 19499977 + 0 NA intron (ENSMUSG00000056494.7, intron 15 of 17) protein_coding-intron (ENSMUSG00000056494.7, intron 15 of 17) 14956 ENSMUSG00000089090.1 ENSMUSG00000089090 ENSMUST00000158465 Gm25655 misc_RNA Interval_37202 chr12 59632208 59632854 + 0 NA Intergenic Intergenic 13635 ENSMUSG00000112851.1 ENSMUSG00000112851 ENSMUST00000219830 Gm7727 processed_pseudogene Interval_105368 chr3 85583680 85583906 + 0 NA intron (ENSMUSG00000028085.12, intron 2 of 12) protein_coding-intron (ENSMUSG00000028085.12, intron 2 of 12) 9661 ENSMUSG00000028085.12 ENSMUSG00000028085 ENSMUST00000029726 Gatb protein_coding Interval_573 chr1 7603491 7604081 + 0 NA Intergenic Intergenic 6407 ENSMUSG00000104226.1 ENSMUSG00000104226 ENSMUST00000194219 Gm7470 processed_pseudogene Interval_137547 chr6 73045141 73047079 + 0 NA intron (ENSMUSG00000052861.13, intron 62 of 75) protein_coding-intron (ENSMUSG00000052861.13, intron 63 of 76) 34067 ENSMUSG00000107546.1 ENSMUSG00000107546 ENSMUST00000204577 Gm20560 antisense Interval_174853 chrX 169905955 169906685 + 0 NA intron (ENSMUSG00000035299.16, intron 1 of 9) protein_coding-intron (ENSMUSG00000035299.16, intron 1 of 9) -20631 ENSMUSG00000035299.16 ENSMUSG00000035299 ENSMUST00000079443 Mid1 protein_coding Interval_1529 chr1 24813601 24813767 + 0 NA Intergenic Intergenic 97975 ENSMUSG00000100808.1 ENSMUSG00000100808 ENSMUST00000187022 Gm28594 processed_pseudogene Interval_52303 chr14 44354005 44354239 + 0 NA Intergenic Intergenic -11235 ENSMUSG00000090379.1 ENSMUSG00000090379 ENSMUST00000168161 Gm8229 protein_coding Interval_99810 chr2 165062677 165063193 + 0 NA TTS (ENSMUSG00000017652.16) protein_coding-TTS (ENSMUSG00000017652.16) 7231 ENSMUSG00000017652.16 ENSMUSG00000017652 ENSMUST00000153105 Cd40 protein_coding Interval_68408 chr16 76085411 76085903 + 0 NA Intergenic Intergenic -36956 ENSMUSG00000116695.1 ENSMUSG00000116695 ENSMUST00000231285 4930578N18Rik lincRNA Interval_22487 chr11 10997567 10998351 + 0 NA Intergenic Intergenic -118526 ENSMUSG00000050830.17 ENSMUSG00000050830 ENSMUST00000154155 Vwc2 protein_coding Interval_16481 chr10 63115808 63116108 + 0 NA TTS (ENSMUSG00000020067.8) protein_coding-TTS (ENSMUSG00000020067.8) 6726 ENSMUSG00000020067.8 ENSMUSG00000020067 ENSMUST00000218978 Mypn protein_coding Interval_4311 chr1 72628324 72628642 + 0 NA TTS (ENSMUSG00000039354.16) protein_coding-TTS (ENSMUSG00000039354.16) -12705 ENSMUSG00000110712.1 ENSMUSG00000110712 ENSMUST00000211909 Gm39662 antisense Interval_15993 chr10 59974104 59974914 + 0 NA Intergenic Intergenic -22675 ENSMUSG00000020108.4 ENSMUSG00000020108 ENSMUST00000020308 Ddit4 protein_coding Interval_64524 chr16 13056039 13056341 + 0 NA Intergenic Intergenic -76201 ENSMUSG00000022545.13 ENSMUSG00000022545 ENSMUST00000156393 Ercc4 protein_coding Interval_113468 chr4 55206273 55209314 + 0 NA intron (ENSMUSG00000087614.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000087614.1, intron 1 of 2) 44785 ENSMUSG00000081177.1 ENSMUSG00000081177 ENSMUST00000118033 Gm12509 processed_pseudogene Interval_57885 chr15 24668698 24669355 + 0 NA Intergenic Intergenic 18158 ENSMUSG00000115048.1 ENSMUSG00000115048 ENSMUST00000228158 Gm48921 processed_pseudogene Interval_76490 chr17 80562677 80563174 + 0 NA intron (ENSMUSG00000117375.1, intron 2 of 2) protein_coding-intron (ENSMUSG00000033966.8, intron 1 of 9) 9461 ENSMUSG00000117375.1 ENSMUSG00000117375 ENSMUST00000234757 Gm33373 antisense Interval_137173 chr6 68998165 68998540 + 0 NA Intergenic Intergenic -7058 ENSMUSG00000076539.3 ENSMUSG00000076539 ENSMUST00000103340 Igkv4-81 IG_V_gene Interval_94426 chr2 91132231 91132564 + 0 NA intron (ENSMUSG00000002100.15, intron 25 of 34) protein_coding-intron (ENSMUSG00000002100.15, intron 25 of 34) 6859 ENSMUSG00000040687.16 ENSMUSG00000040687 ENSMUST00000150517 Madd protein_coding Interval_60336 chr15 72990796 72991057 + 0 NA intron (ENSMUSG00000047921.17, intron 8 of 16) protein_coding-intron (ENSMUSG00000047921.17, intron 8 of 21) 70119 ENSMUSG00000047921.17 ENSMUSG00000047921 ENSMUST00000228960 Trappc9 protein_coding Interval_57990 chr15 25881897 25882201 + 0 NA intron (ENSMUSG00000022270.16, intron 1 of 8) protein_coding-intron (ENSMUSG00000022270.16, intron 1 of 8) -28375 ENSMUSG00000022270.16 ENSMUSG00000022270 ENSMUST00000228306 Retreg1 protein_coding Interval_112104 chr4 34720260 34721602 + 0 NA TTS (ENSMUSG00000028294.15) protein_coding-TTS (ENSMUSG00000028294.15) 9264 ENSMUSG00000028294.15 ENSMUSG00000028294 ENSMUST00000160209 Cfap206 protein_coding Interval_147448 chr7 67353479 67354130 + 0 NA intron (ENSMUSG00000030557.17, intron 1 of 11) protein_coding-intron (ENSMUSG00000030557.17, intron 1 of 10) 17176 ENSMUSG00000109363.1 ENSMUSG00000109363 ENSMUST00000207911 Gm44668 TEC Interval_118058 chr4 128680859 128681497 + 0 NA intron (ENSMUSG00000028796.17, intron 1 of 6) protein_coding-intron (ENSMUSG00000028796.17, intron 1 of 14) -28986 ENSMUSG00000028796.17 ENSMUSG00000028796 ENSMUST00000134421 Phc2 protein_coding Interval_168966 chr9 89815242 89816077 + 0 NA Intergenic Intergenic -11323 ENSMUSG00000098627.7 ENSMUSG00000098627 ENSMUST00000184759 4930524O08Rik lincRNA Interval_71289 chr17 21954831 21956168 + 0 NA intron (ENSMUSG00000071267.11, intron 1 of 2) protein_coding-intron (ENSMUSG00000071267.11, intron 1 of 5) 6965 ENSMUSG00000071267.11 ENSMUSG00000071267 ENSMUST00000126485 Zfp942 protein_coding Interval_151161 chr7 118918877 118919113 + 0 NA intron (ENSMUSG00000073856.11, intron 6 of 7) protein_coding-intron (ENSMUSG00000073856.11, intron 7 of 8) 50691 ENSMUSG00000109517.1 ENSMUSG00000109517 ENSMUST00000208287 Gm44763 antisense Interval_46692 chr13 69325697 69325901 + 0 NA Intergenic Intergenic -19856 ENSMUSG00000098227.1 ENSMUSG00000098227 ENSMUST00000182847 Gm4812 processed_pseudogene Interval_7326 chr1 129035655 129036072 + 0 NA Intergenic Intergenic -149844 ENSMUSG00000064737.1 ENSMUSG00000064737 ENSMUST00000082803 Gm23056 snRNA Interval_12156 chr1 190214765 190215330 + 0 NA intron (ENSMUSG00000079045.3, intron 1 of 1) antisense-intron (ENSMUSG00000079045.3, intron 1 of 1) -44367 ENSMUSG00000010175.13 ENSMUSG00000010175 ENSMUST00000177288 Prox1 protein_coding Interval_84017 chr19 6127591 6128614 + 0 NA promoter-TSS (ENSMUSG00000024787.14) protein_coding-promoter-TSS (ENSMUSG00000024787.14) -4149 ENSMUSG00000024787.14 ENSMUSG00000024787 ENSMUST00000129076 Snx15 protein_coding Interval_94463 chr2 91405194 91405496 + 0 NA intron (ENSMUSG00000040591.18, intron 1 of 7) protein_coding-intron (ENSMUSG00000040591.18, intron 2 of 8) 1791 ENSMUSG00000080507.2 ENSMUSG00000080507 ENSMUST00000116857 Gm22071 miRNA Interval_71237 chr17 21488628 21489450 + 0 NA promoter-TSS (ENSMUSG00000057409.7) protein_coding-promoter-TSS (ENSMUSG00000057409.7) 41 ENSMUSG00000057409.7 ENSMUSG00000057409 ENSMUST00000076664 Zfp53 protein_coding Interval_105006 chr3 79670662 79671631 + 0 NA intron (ENSMUSG00000034009.14, intron 4 of 15) protein_coding-intron (ENSMUSG00000034009.14, intron 5 of 17) 5730 ENSMUSG00000098204.1 ENSMUSG00000098204 ENSMUST00000182345 Gm26984 sense_intronic Interval_126612 chr5 90924617 90925951 + 0 NA TTS (ENSMUSG00000107218.1) lincRNA-TTS (ENSMUSG00000107218.1) 2552 ENSMUSG00000107218.1 ENSMUSG00000107218 ENSMUST00000202683 Gm42530 lincRNA Interval_44164 chr13 41358499 41359657 + 0 NA promoter-TSS (ENSMUSG00000097373.1) antisense-promoter-TSS (ENSMUSG00000097373.1) -893 ENSMUSG00000097373.1 ENSMUSG00000097373 ENSMUST00000180728 Gm26877 antisense Interval_1611 chr1 29902663 29903128 + 0 NA Intergenic Intergenic -27199 ENSMUSG00000101726.1 ENSMUSG00000101726 ENSMUST00000190177 Gm7858 processed_pseudogene Interval_159829 chr8 104142448 104142936 + 0 NA exon (ENSMUSG00000031871.9, exon 12 of 12) protein_coding-exon (ENSMUSG00000031871.9, exon 12 of 12) -10014 ENSMUSG00000109909.1 ENSMUSG00000109909 ENSMUST00000210429 Gm45663 TEC Interval_132985 chr5 149101793 149102459 + 0 NA intron (ENSMUSG00000066551.12, intron 2 of 5) protein_coding-intron (ENSMUSG00000066551.12, intron 2 of 5) 21286 ENSMUSG00000097191.2 ENSMUSG00000097191 ENSMUST00000200718 Mm2pr lincRNA Interval_15309 chr10 44408893 44410890 + 0 NA Intergenic Intergenic 14433 ENSMUSG00000111078.1 ENSMUSG00000111078 ENSMUST00000215400 Gm35028 lincRNA Interval_12144 chr1 190076970 190078020 + 0 NA Intergenic Intergenic -91175 ENSMUSG00000099404.1 ENSMUSG00000099404 ENSMUST00000189880 Gm28172 antisense Interval_65421 chr16 22240391 22242695 + 0 NA Intergenic Intergenic -2625 ENSMUSG00000116761.1 ENSMUSG00000116761 ENSMUST00000232582 Gm36796 processed_pseudogene Interval_120042 chr4 141498790 141499917 + 0 NA intron (ENSMUSG00000040761.16, intron 1 of 1) protein_coding-intron (ENSMUSG00000040761.16, intron 3 of 14) -11041 ENSMUSG00000040761.16 ENSMUSG00000040761 ENSMUST00000152081 Spen protein_coding Interval_129587 chr5 121164486 121165017 + 0 NA intron (ENSMUSG00000043733.14, intron 3 of 14) protein_coding-intron (ENSMUSG00000043733.14, intron 3 of 15) 20245 ENSMUSG00000106940.1 ENSMUSG00000106940 ENSMUST00000200872 Gm42930 TEC Interval_42783 chr13 19407501 19407751 + 0 NA Intergenic Intergenic -5174 ENSMUSG00000104959.1 ENSMUSG00000104959 ENSMUST00000199241 Gm18131 processed_pseudogene Interval_88058 chr19 58604483 58604696 + 0 NA Intergenic Intergenic -1740 ENSMUSG00000100001.1 ENSMUSG00000100001 ENSMUST00000187629 1810007D17Rik lincRNA Interval_97867 chr2 144582375 144582570 + 0 NA intron (ENSMUSG00000027429.16, intron 11 of 16) protein_coding-intron (ENSMUSG00000027429.16, intron 14 of 19) -11582 ENSMUSG00000074754.4 ENSMUSG00000074754 ENSMUST00000136628 Smim26 protein_coding Interval_142872 chr6 146606301 146606546 + 0 NA intron (ENSMUSG00000040234.16, intron 10 of 11) protein_coding-intron (ENSMUSG00000040234.16, intron 10 of 11) 28483 ENSMUSG00000040242.14 ENSMUSG00000040242 ENSMUST00000160697 Fgfr1op2 protein_coding Interval_74760 chr17 56363312 56363583 + 0 NA intron (ENSMUSG00000024201.12, intron 5 of 21) protein_coding-intron (ENSMUSG00000024201.12, intron 5 of 22) -30070 ENSMUSG00000024201.12 ENSMUSG00000024201 ENSMUST00000141507 Kdm4b protein_coding Interval_164772 chr9 41594778 41595150 + 0 NA intron (ENSMUSG00000074415.14, intron 1 of 1) processed_transcript-intron (ENSMUSG00000074415.14, intron 1 of 1) 13038 ENSMUSG00000093354.1 ENSMUSG00000093354 ENSMUST00000175613 Mir125b-1 miRNA Interval_12602 chr10 3841839 3842894 + 0 NA intron (ENSMUSG00000040624.18, intron 1 of 15) protein_coding-intron (ENSMUSG00000040624.18, intron 2 of 16) 7487 ENSMUSG00000040624.18 ENSMUSG00000040624 ENSMUST00000141367 Plekhg1 protein_coding Interval_146380 chr7 45605415 45606223 + 0 NA Intergenic Intergenic 8679 ENSMUSG00000109632.1 ENSMUSG00000109632 ENSMUST00000209936 Gm31479 lincRNA Interval_36317 chr12 41097623 41097856 + 0 NA intron (ENSMUSG00000056899.10, intron 3 of 3) protein_coding-intron (ENSMUSG00000056899.10, intron 1 of 1) -52800 ENSMUSG00000113994.1 ENSMUSG00000113994 ENSMUST00000220956 Gm47375 antisense Interval_140538 chr6 119388033 119389156 + 0 NA promoter-TSS (ENSMUSG00000030168.13) protein_coding-promoter-TSS (ENSMUSG00000030168.13) 28881 ENSMUSG00000030168.13 ENSMUSG00000030168 ENSMUST00000189710 Adipor2 protein_coding Interval_149447 chr7 98655627 98657346 + 0 NA promoter-TSS (ENSMUSG00000035401.9) protein_coding-promoter-TSS (ENSMUSG00000035401.9) 24161 ENSMUSG00000109101.1 ENSMUSG00000109101 ENSMUST00000207234 Gm45132 TEC Interval_71070 chr17 17645657 17646373 + 0 NA Intergenic Intergenic -2806 ENSMUSG00000116818.1 ENSMUSG00000116818 ENSMUST00000232676 Gm7513 processed_pseudogene Interval_147501 chr7 67788090 67789208 + 0 NA intron (ENSMUSG00000097697.2, intron 1 of 3) lincRNA-intron (ENSMUSG00000097697.2, intron 1 of 2) -4868 ENSMUSG00000097981.1 ENSMUSG00000097981 ENSMUST00000182941 Gm7583 processed_pseudogene Interval_139179 chr6 96921235 96922535 + 0 NA intron (ENSMUSG00000046500.8, intron 3 of 5) protein_coding-intron (ENSMUSG00000046500.8, intron 3 of 5) 138508 ENSMUSG00000046500.8 ENSMUSG00000046500 ENSMUST00000203930 Tafa4 protein_coding Interval_90895 chr2 33314586 33315411 + 0 NA intron (ENSMUSG00000038831.16, intron 3 of 16) protein_coding-intron (ENSMUSG00000038831.16, intron 3 of 16) -8173 ENSMUSG00000082844.1 ENSMUSG00000082844 ENSMUST00000120467 Gm13537 processed_pseudogene Interval_34325 chr12 3392877 3393823 + 0 NA intron (ENSMUSG00000020668.10, intron 6 of 8) protein_coding-intron (ENSMUSG00000020668.10, intron 5 of 7) 10716 ENSMUSG00000112308.1 ENSMUSG00000112308 ENSMUST00000217965 Gm48512 antisense Interval_51724 chr14 31656551 31657098 + 0 NA intron (ENSMUSG00000021900.10, intron 1 of 2) protein_coding-intron (ENSMUSG00000021900.10, intron 1 of 3) 15796 ENSMUSG00000021900.10 ENSMUSG00000021900 ENSMUST00000090147 Btd protein_coding Interval_68750 chr16 85471538 85471960 + 0 NA intron (ENSMUSG00000041134.15, intron 2 of 3) protein_coding-intron (ENSMUSG00000041134.15, intron 2 of 3) 78668 ENSMUSG00000041134.15 ENSMUSG00000041134 ENSMUST00000162621 Cyyr1 protein_coding Interval_146875 chr7 54406341 54407312 + 0 NA Intergenic Intergenic 5652 ENSMUSG00000099647.1 ENSMUSG00000099647 ENSMUST00000122119 Gm5776 processed_pseudogene Interval_151708 chr7 126180750 126181740 + 0 NA exon (ENSMUSG00000000131.15, exon 1 of 1) protein_coding-exon (ENSMUSG00000000131.15, exon 1 of 1) 5121 ENSMUSG00000057945.3 ENSMUSG00000057945 ENSMUST00000169993 Gm17136 processed_pseudogene Interval_170230 chr9 106330528 106330798 + 0 NA intron (ENSMUSG00000023345.17, intron 10 of 10) protein_coding-intron (ENSMUSG00000023345.17, intron 10 of 10) 5170 ENSMUSG00000099879.1 ENSMUSG00000099879 ENSMUST00000185808 Gm29123 antisense Interval_92966 chr2 69035465 69036165 + 0 NA intron (ENSMUSG00000027035.10, intron 4 of 10) protein_coding-intron (ENSMUSG00000027035.10, intron 4 of 9) 17719 ENSMUSG00000102662.1 ENSMUSG00000102662 ENSMUST00000193253 Gm38377 TEC Interval_150004 chr7 104531174 104531675 + 0 NA Intergenic Intergenic -2329 ENSMUSG00000083248.1 ENSMUSG00000083248 ENSMUST00000120037 Gm6574 processed_pseudogene Interval_75680 chr17 70600503 70601451 + 0 NA intron (ENSMUSG00000003279.17, intron 2 of 9) protein_coding-intron (ENSMUSG00000003279.17, intron 7 of 14) 154605 ENSMUSG00000097282.1 ENSMUSG00000097282 ENSMUST00000181546 5031415H12Rik antisense Interval_135208 chr6 37554190 37554414 + 0 NA intron (ENSMUSG00000038641.12, intron 2 of 3) protein_coding-intron (ENSMUSG00000038641.12, intron 4 of 8) 12888 ENSMUSG00000106889.1 ENSMUSG00000106889 ENSMUST00000201541 Gm7463 processed_pseudogene Interval_109778 chr3 146900322 146900640 + 0 NA intron (ENSMUSG00000036745.15, intron 5 of 20) protein_coding-intron (ENSMUSG00000036745.15, intron 5 of 21) -43439 ENSMUSG00000036745.15 ENSMUSG00000036745 ENSMUST00000197547 Ttll7 protein_coding Interval_25991 chr11 53361007 53361417 + 0 NA intron (ENSMUSG00000049470.13, intron 1 of 20) protein_coding-intron (ENSMUSG00000049470.13, intron 1 of 20) -15535 ENSMUSG00000082263.1 ENSMUSG00000082263 ENSMUST00000122382 Gm11188 processed_pseudogene Interval_151196 chr7 119427100 119427842 + 0 NA Intergenic Intergenic 31801 ENSMUSG00000030954.11 ENSMUSG00000030954 ENSMUST00000239424 Gp2 protein_coding Interval_82697 chr18 76026671 76026896 + 0 NA intron (ENSMUSG00000044646.15, intron 3 of 5) protein_coding-intron (ENSMUSG00000044646.15, intron 3 of 4) -11106 ENSMUSG00000118311.1 ENSMUSG00000118311 ENSMUST00000238127 1700003O11Rik antisense Interval_103387 chr3 41111235 41111717 + 0 NA Intergenic Intergenic -40806 ENSMUSG00000049940.7 ENSMUSG00000049940 ENSMUST00000124636 Pgrmc2 protein_coding Interval_94039 chr2 81848694 81850117 + 0 NA Intergenic Intergenic 273706 ENSMUSG00000082666.1 ENSMUSG00000082666 ENSMUST00000120739 Gm13677 processed_pseudogene Interval_154299 chr8 14123318 14124440 + 0 NA intron (ENSMUSG00000047495.15, intron 1 of 14) protein_coding-intron (ENSMUSG00000047495.15, intron 1 of 15) -12431 ENSMUSG00000085371.1 ENSMUSG00000085371 ENSMUST00000128343 Gm3160 processed_pseudogene Interval_70112 chr17 5412473 5413485 + 0 NA intron (ENSMUSG00000101133.1, intron 3 of 3) protein_coding-intron (ENSMUSG00000004945.15, intron 3 of 3) 5788 ENSMUSG00000101959.1 ENSMUSG00000101959 ENSMUST00000189788 Ldhal6b protein_coding Interval_63491 chr15 101427233 101427456 + 0 NA intron (ENSMUSG00000023039.17, intron 7 of 7) protein_coding-intron (ENSMUSG00000023039.17, intron 8 of 8) 11460 ENSMUSG00000047641.8 ENSMUSG00000047641 ENSMUST00000081945 Krt87 protein_coding Interval_165818 chr9 53462919 53463131 + 0 NA intron (ENSMUSG00000034218.16, intron 43 of 63) protein_coding-intron (ENSMUSG00000034218.16, intron 42 of 61) 57727 ENSMUSG00000005131.4 ENSMUSG00000005131 ENSMUST00000217318 4930550C14Rik protein_coding Interval_171288 chr9 116084923 116085191 + 0 NA exon (ENSMUSG00000032440.13, exon 8 of 8) protein_coding-exon (ENSMUSG00000032440.13, exon 8 of 8) -43993 ENSMUSG00000080848.3 ENSMUSG00000080848 ENSMUST00000117563 Gm9385 processed_pseudogene Interval_49317 chr13 110690964 110691325 + 0 NA Intergenic Intergenic 7232 ENSMUSG00000114775.1 ENSMUSG00000114775 ENSMUST00000225669 Gm33172 lincRNA Interval_157442 chr8 70400313 70401166 + 0 NA intron (ENSMUSG00000003575.13, intron 5 of 13) protein_coding-intron (ENSMUSG00000003575.13, intron 5 of 13) 26868 ENSMUSG00000031849.9 ENSMUSG00000031849 ENSMUST00000212488 Comp protein_coding Interval_76192 chr17 76614873 76615061 + 0 NA Intergenic Intergenic 206523 ENSMUSG00000117498.1 ENSMUSG00000117498 ENSMUST00000234836 Gm18366 processed_pseudogene Interval_68041 chr16 64597834 64598061 + 0 NA intron (ENSMUSG00000068167.6, intron 1 of 2) protein_coding-intron (ENSMUSG00000068167.6, intron 1 of 2) 4461 ENSMUSG00000068167.6 ENSMUSG00000068167 ENSMUST00000089279 Csnka2ip protein_coding Interval_21578 chr10 130201005 130201608 + 0 NA Intergenic Intergenic 13097 ENSMUSG00000045559.6 ENSMUSG00000045559 ENSMUST00000058123 Olfr827 protein_coding Interval_13943 chr10 24873760 24874033 + 0 NA intron (ENSMUSG00000019984.16, intron 4 of 14) protein_coding-intron (ENSMUSG00000019984.16, intron 4 of 28) 3859 ENSMUSG00000019984.16 ENSMUSG00000019984 ENSMUST00000175786 Med23 protein_coding Interval_97861 chr2 144503094 144503829 + 0 NA intron (ENSMUSG00000037259.15, intron 8 of 20) protein_coding-intron (ENSMUSG00000037259.15, intron 8 of 20) 23937 ENSMUSG00000037259.15 ENSMUSG00000037259 ENSMUST00000150816 Dzank1 protein_coding Interval_82717 chr18 76166366 76166609 + 0 NA Intergenic Intergenic -4065 ENSMUSG00000098276.1 ENSMUSG00000098276 ENSMUST00000184549 Mir6358 miRNA Interval_166616 chr9 61321773 61322845 + 0 NA Intergenic Intergenic -28500 ENSMUSG00000111658.1 ENSMUSG00000111658 ENSMUST00000213377 B930092H01Rik lincRNA Interval_21647 chr11 3444750 3445057 + 0 NA intron (ENSMUSG00000020448.16, intron 1 of 7) protein_coding-intron (ENSMUSG00000020448.16, intron 1 of 7) 7431 ENSMUSG00000020448.16 ENSMUSG00000020448 ENSMUST00000144055 Rnf185 protein_coding Interval_141762 chr6 134294332 134294513 + 0 NA Intergenic Intergenic -48056 ENSMUSG00000108263.1 ENSMUSG00000108263 ENSMUST00000204426 1700051K13Rik TEC Interval_23667 chr11 24254415 24254619 + 0 NA Intergenic Intergenic -51893 ENSMUSG00000086117.1 ENSMUSG00000086117 ENSMUST00000149592 Gm12065 lincRNA Interval_58941 chr15 40250761 40251168 + 0 NA Intergenic Intergenic -64865 ENSMUSG00000092855.1 ENSMUSG00000092855 ENSMUST00000175114 Gm25958 miRNA Interval_99091 chr2 157127580 157127915 + 0 NA intron (ENSMUSG00000027639.16, intron 1 of 3) protein_coding-intron (ENSMUSG00000027639.16, intron 2 of 15) -17135 ENSMUSG00000027639.16 ENSMUSG00000027639 ENSMUST00000152866 Samhd1 protein_coding Interval_54849 chr14 75809821 75810355 + 0 NA Intergenic Intergenic -23083 ENSMUSG00000022003.7 ENSMUSG00000022003 ENSMUST00000228379 Slc25a30 protein_coding Interval_25322 chr11 46311429 46312872 + 0 NA promoter-TSS (ENSMUSG00000020340.16) protein_coding-promoter-TSS (ENSMUSG00000020340.16) 208 ENSMUSG00000020340.16 ENSMUSG00000020340 ENSMUST00000129474 Cyfip2 protein_coding Interval_173073 chrX 70476673 70477621 + 0 NA promoter-TSS (ENSMUSG00000073139.9) protein_coding-promoter-TSS (ENSMUSG00000073139.9) -6968 ENSMUSG00000073139.9 ENSMUSG00000073139 ENSMUST00000134954 Tmem185a protein_coding Interval_150597 chr7 112718508 112721099 + 0 NA intron (ENSMUSG00000055320.18, intron 2 of 2) protein_coding-intron (ENSMUSG00000055320.18, intron 1 of 13) 5852 ENSMUSG00000106046.1 ENSMUSG00000106046 ENSMUST00000199696 Gm44462 miRNA Interval_89144 chr2 17324240 17324940 + 0 NA Intergenic Intergenic 66418 ENSMUSG00000053702.16 ENSMUSG00000053702 ENSMUST00000130725 Nebl protein_coding Interval_129593 chr5 121190673 121191945 + 0 NA promoter-TSS (ENSMUSG00000043733.14) protein_coding-promoter-TSS (ENSMUSG00000043733.14) -6313 ENSMUSG00000106940.1 ENSMUSG00000106940 ENSMUST00000200872 Gm42930 TEC Interval_49836 chr13 116936861 116937327 + 0 NA intron (ENSMUSG00000021725.9, intron 3 of 6) protein_coding-intron (ENSMUSG00000021725.9, intron 4 of 26) 88179 ENSMUSG00000021725.9 ENSMUSG00000021725 ENSMUST00000223833 Parp8 protein_coding Interval_121746 chr5 6423002 6423799 + 0 NA intron (ENSMUSG00000106064.1, intron 1 of 3) lincRNA-intron (ENSMUSG00000106064.1, intron 1 of 3) 5832 ENSMUSG00000104663.1 ENSMUSG00000104663 ENSMUST00000197670 Gm3203 processed_pseudogene Interval_25860 chr11 52219975 52220726 + 0 NA Intergenic Intergenic -6363 ENSMUSG00000060170.3 ENSMUSG00000060170 ENSMUST00000075844 Olfr1371 protein_coding Interval_134689 chr6 30401349 30402329 + 0 NA promoter-TSS (ENSMUSG00000029775.14) protein_coding-promoter-TSS (ENSMUSG00000029775.14) 22738 ENSMUSG00000065662.1 ENSMUSG00000065662 ENSMUST00000083728 n-R5s161 rRNA Interval_161582 chr8 121377678 121378650 + 0 NA intron (ENSMUSG00000092329.1, intron 1 of 15) protein_coding-intron (ENSMUSG00000092329.1, intron 1 of 15) -21328 ENSMUSG00000097384.1 ENSMUSG00000097384 ENSMUST00000181200 Gm26815 lincRNA Interval_157832 chr8 74784043 74784245 + 0 NA TTS (ENSMUSG00000079011.9) lincRNA-TTS (ENSMUSG00000079011.9) 49793 ENSMUSG00000079011.9 ENSMUSG00000079011 ENSMUST00000137218 Gm11033 lincRNA Interval_157012 chr8 64424491 64424859 + 0 NA Intergenic Intergenic -7575 ENSMUSG00000109579.1 ENSMUSG00000109579 ENSMUST00000211285 Gm35521 lincRNA Interval_86050 chr19 36002734 36002974 + 0 NA intron (ENSMUSG00000024798.15, intron 1 of 3) protein_coding-intron (ENSMUSG00000024798.15, intron 1 of 3) 54653 ENSMUSG00000024798.15 ENSMUSG00000024798 ENSMUST00000099505 Htr7 protein_coding Interval_113315 chr4 53416698 53417531 + 0 NA Intergenic Intergenic -13084 ENSMUSG00000086267.1 ENSMUSG00000086267 ENSMUST00000154377 Gm12496 lincRNA Interval_79975 chr18 36382428 36382660 + 0 NA intron (ENSMUSG00000046727.13, intron 4 of 4) protein_coding-intron (ENSMUSG00000046727.13, intron 2 of 2) 39964 ENSMUSG00000046727.13 ENSMUSG00000046727 ENSMUST00000144158 Cystm1 protein_coding Interval_59236 chr15 49318692 49318900 + 0 NA Intergenic Intergenic 124459 ENSMUSG00000115775.1 ENSMUSG00000115775 ENSMUST00000228245 Gm41318 lincRNA Interval_163582 chr9 22337403 22337686 + 0 NA intron (ENSMUSG00000036777.8, intron 3 of 3) protein_coding-intron (ENSMUSG00000036777.8, intron 22 of 23) -7044 ENSMUSG00000110759.1 ENSMUSG00000110759 ENSMUST00000215035 Gm6607 processed_pseudogene Interval_110405 chr3 157853274 157853733 + 0 NA Intergenic Intergenic 35371 ENSMUSG00000104862.1 ENSMUSG00000104862 ENSMUST00000200636 Gm6520 processed_pseudogene Interval_159789 chr8 103580358 103580612 + 0 NA Intergenic Intergenic -16862 ENSMUSG00000109699.1 ENSMUSG00000109699 ENSMUST00000210549 Gm45277 lincRNA Interval_121789 chr5 8242995 8243871 + 0 NA TTS (ENSMUSG00000088103.1) snoRNA-TTS (ENSMUSG00000088103.1) 710 ENSMUSG00000088103.1 ENSMUSG00000088103 ENSMUST00000157478 Gm23993 snoRNA Interval_63897 chr16 4413264 4413801 + 0 NA intron (ENSMUSG00000005580.11, intron 3 of 11) protein_coding-intron (ENSMUSG00000005580.11, intron 1 of 9) 6966 ENSMUSG00000005580.11 ENSMUSG00000005580 ENSMUST00000005719 Adcy9 protein_coding Interval_35317 chr12 20493144 20493373 + 0 NA Intergenic Intergenic 19696 ENSMUSG00000113026.1 ENSMUSG00000113026 ENSMUST00000221690 Gm48669 processed_pseudogene Interval_5810 chr1 92084656 92085164 + 0 NA intron (ENSMUSG00000026313.16, intron 3 of 4) protein_coding-intron (ENSMUSG00000026313.16, intron 1 of 25) -62813 ENSMUSG00000102565.1 ENSMUSG00000102565 ENSMUST00000192836 Gm37036 TEC Interval_113776 chr4 58531046 58531572 + 0 NA intron (ENSMUSG00000038668.14, intron 1 of 3) protein_coding-intron (ENSMUSG00000038668.14, intron 1 of 3) 17092 ENSMUSG00000038668.14 ENSMUSG00000038668 ENSMUST00000145361 Lpar1 protein_coding Interval_93267 chr2 71566173 71566966 + 0 NA Intergenic Intergenic -20619 ENSMUSG00000023391.8 ENSMUSG00000023391 ENSMUST00000134249 Dlx2 protein_coding Interval_33936 chr11 119532751 119532961 + 0 NA Intergenic Intergenic 14897 ENSMUSG00000025582.4 ENSMUSG00000025582 ENSMUST00000026670 Nptx1 protein_coding Interval_156123 chr8 44962603 44963056 + 0 NA intron (ENSMUSG00000070047.14, intron 1 of 28) protein_coding-intron (ENSMUSG00000070047.14, intron 1 of 25) 12615 ENSMUSG00000070047.14 ENSMUSG00000070047 ENSMUST00000189367 Fat1 protein_coding Interval_115742 chr4 103214274 103215775 + 0 NA promoter-TSS (ENSMUSG00000028521.17) protein_coding-promoter-TSS (ENSMUSG00000028521.17) -221 ENSMUSG00000028521.17 ENSMUSG00000028521 ENSMUST00000154845 Slc35d1 protein_coding Interval_83812 chr19 4825542 4826668 + 0 NA promoter-TSS (ENSMUSG00000034108.6) protein_coding-promoter-TSS (ENSMUSG00000034108.6) 13114 ENSMUSG00000034108.6 ENSMUSG00000034108 ENSMUST00000235425 Ccs protein_coding Interval_93102 chr2 70214576 70214833 + 0 NA intron (ENSMUSG00000042064.13, intron 8 of 33) protein_coding-intron (ENSMUSG00000042064.13, intron 9 of 34) 131630 ENSMUSG00000042064.13 ENSMUSG00000042064 ENSMUST00000112241 Myo3b protein_coding Interval_4325 chr1 72726108 72727221 + 0 NA Intergenic Intergenic 15350 ENSMUSG00000046330.10 ENSMUSG00000046330 ENSMUST00000211963 Rpl37a protein_coding Interval_133573 chr6 6941040 6941237 + 0 NA Intergenic Intergenic 14762 ENSMUSG00000097356.1 ENSMUSG00000097356 ENSMUST00000181534 Gm26774 lincRNA Interval_169087 chr9 92147681 92148167 + 0 NA Intergenic Intergenic -45012 ENSMUSG00000095654.2 ENSMUSG00000095654 ENSMUST00000179751 Plscr5 protein_coding Interval_22389 chr11 9415506 9415779 + 0 NA intron (ENSMUSG00000004668.14, intron 35 of 61) protein_coding-intron (ENSMUSG00000004668.14, intron 35 of 61) 222191 ENSMUSG00000004668.14 ENSMUSG00000004668 ENSMUST00000151522 Abca13 protein_coding Interval_171453 chr9 118456110 118456994 + 0 NA Intergenic Intergenic 10512 ENSMUSG00000084515.1 ENSMUSG00000084515 ENSMUST00000122566 Gm22479 snRNA Interval_135258 chr6 37891948 37892786 + 0 NA intron (ENSMUSG00000029833.17, intron 2 of 7) protein_coding-intron (ENSMUSG00000029833.17, intron 1 of 18) 21556 ENSMUSG00000029833.17 ENSMUSG00000029833 ENSMUST00000135387 Trim24 protein_coding Interval_50821 chr14 20025305 20025593 + 0 NA Intergenic Intergenic 32848 ENSMUSG00000114498.1 ENSMUSG00000114498 ENSMUST00000224881 Gm48339 processed_pseudogene Interval_91778 chr2 49484183 49484614 + 0 NA intron (ENSMUSG00000069495.12, intron 1 of 13) protein_coding-intron (ENSMUSG00000069495.12, intron 1 of 13) -44477 ENSMUSG00000069495.12 ENSMUSG00000069495 ENSMUST00000152485 Epc2 protein_coding Interval_103169 chr3 36207918 36208670 + 0 NA intron (ENSMUSG00000058400.13, intron 1 of 5) protein_coding-intron (ENSMUSG00000058400.13, intron 1 of 5) 5005 ENSMUSG00000104568.1 ENSMUSG00000104568 ENSMUST00000198885 Gm43255 antisense Interval_132242 chr5 143561634 143562430 + 0 NA intron (ENSMUSG00000083012.9, intron 2 of 2) protein_coding-intron (ENSMUSG00000118332.1, intron 1 of 1) 13324 ENSMUSG00000083012.9 ENSMUSG00000083012 ENSMUST00000198994 Fam220a protein_coding Interval_20569 chr10 119110931 119111159 + 0 NA promoter-TSS (ENSMUSG00000112609.1) lincRNA-promoter-TSS (ENSMUSG00000112609.1) -579 ENSMUSG00000112609.1 ENSMUSG00000112609 ENSMUST00000220151 Gm47480 lincRNA Interval_172114 chrX 7696675 7697640 + 0 NA promoter-TSS (ENSMUSG00000031148.14) protein_coding-promoter-TSS (ENSMUSG00000031148.14) -6348 ENSMUSG00000031148.14 ENSMUSG00000031148 ENSMUST00000129845 Gpkow protein_coding Interval_115316 chr4 96076577 96078115 + 0 NA exon (ENSMUSG00000028571.15, exon 1 of 9) protein_coding-exon (ENSMUSG00000028571.15, exon 1 of 9) -4640 ENSMUSG00000083880.1 ENSMUSG00000083880 ENSMUST00000120275 Hspe1-ps6 processed_pseudogene Interval_137802 chr6 82633626 82634846 + 0 NA intron (ENSMUSG00000030042.15, intron 3 of 3) protein_coding-intron (ENSMUSG00000030042.15, intron 3 of 3) -45896 ENSMUSG00000107453.1 ENSMUSG00000107453 ENSMUST00000203711 Gm44145 antisense Interval_148172 chr7 79622726 79623591 + 0 NA Intergenic Intergenic -19482 ENSMUSG00000108318.1 ENSMUSG00000108318 ENSMUST00000206746 Gm45170 TEC Interval_91703 chr2 48438940 48439215 + 0 NA intron (ENSMUSG00000086353.1, intron 1 of 5) lincRNA-intron (ENSMUSG00000086353.1, intron 1 of 5) 18168 ENSMUSG00000086353.1 ENSMUSG00000086353 ENSMUST00000127672 Gm13481 lincRNA Interval_92375 chr2 59351718 59352604 + 0 NA intron (ENSMUSG00000026991.20, intron 20 of 21) protein_coding-intron (ENSMUSG00000026991.20, intron 20 of 21) 35310 ENSMUSG00000087455.7 ENSMUSG00000087455 ENSMUST00000155111 5330411J11Rik processed_transcript Interval_128581 chr5 114143154 114143353 + 0 NA Intergenic Intergenic 11173 ENSMUSG00000029591.14 ENSMUSG00000029591 ENSMUST00000200479 Ung protein_coding Interval_51893 chr14 33412235 33412462 + 0 NA intron (ENSMUSG00000021936.14, intron 1 of 4) protein_coding-intron (ENSMUSG00000021936.14, intron 1 of 11) 16677 ENSMUSG00000115248.1 ENSMUSG00000115248 ENSMUST00000227392 Gm49037 processed_pseudogene Interval_74090 chr17 46540072 46541067 + 0 NA exon (ENSMUSG00000040327.16, exon 4 of 42) protein_coding-exon (ENSMUSG00000040327.16, exon 4 of 42) 11224 ENSMUSG00000015605.6 ENSMUSG00000015605 ENSMUST00000233797 Srf protein_coding Interval_42860 chr13 20522820 20523723 + 0 NA intron (ENSMUSG00000041112.17, intron 1 of 4) protein_coding-intron (ENSMUSG00000041112.17, intron 16 of 21) 18476 ENSMUSG00000113557.1 ENSMUSG00000113557 ENSMUST00000220999 Gm47657 TEC Interval_5320 chr1 87541425 87542248 + 0 NA intron (ENSMUSG00000026259.14, intron 2 of 14) protein_coding-intron (ENSMUSG00000026259.14, intron 2 of 14) 2856 ENSMUSG00000090994.1 ENSMUSG00000090994 ENSMUST00000172004 Gm6153 processed_pseudogene Interval_135904 chr6 48585267 48585623 + 0 NA Intergenic Intergenic -4000 ENSMUSG00000052730.7 ENSMUSG00000052730 ENSMUST00000181661 Gm5111 processed_transcript Interval_140733 chr6 120915359 120917312 + 0 NA intron (ENSMUSG00000004446.12, intron 1 of 4) protein_coding-intron (ENSMUSG00000004446.12, intron 1 of 5) -1342 ENSMUSG00000107971.1 ENSMUSG00000107971 ENSMUST00000204946 Gm44260 TEC Interval_48684 chr13 101161560 101161916 + 0 NA Intergenic Intergenic -70389 ENSMUSG00000114590.1 ENSMUSG00000114590 ENSMUST00000223648 5930438M14Rik lincRNA Interval_136271 chr6 52442868 52444705 + 0 NA Intergenic Intergenic -48665 ENSMUSG00000107895.1 ENSMUSG00000107895 ENSMUST00000203771 1700094M24Rik lincRNA Interval_67352 chr16 47209783 47210124 + 0 NA Intergenic Intergenic -2417 ENSMUSG00000116928.1 ENSMUSG00000116928 ENSMUST00000232587 Gm18169 processed_pseudogene Interval_43436 chr13 30938299 30939834 + 0 NA intron (ENSMUSG00000021357.14, intron 2 of 6) protein_coding-intron (ENSMUSG00000021357.14, intron 2 of 27) 8693 ENSMUSG00000076430.1 ENSMUSG00000076430 ENSMUST00000102943 Hus1b protein_coding Interval_45302 chr13 54174554 54175104 + 0 NA Intergenic Intergenic 33894 ENSMUSG00000114042.1 ENSMUSG00000114042 ENSMUST00000220543 Gm18473 processed_pseudogene Interval_29065 chr11 80131547 80133248 + 0 NA intron (ENSMUSG00000017550.14, intron 16 of 18) protein_coding-intron (ENSMUSG00000017550.14, intron 20 of 22) 7512 ENSMUSG00000046909.9 ENSMUSG00000046909 ENSMUST00000131601 Tefm protein_coding Interval_86186 chr19 37649120 37649334 + 0 NA intron (ENSMUSG00000053799.8, intron 20 of 22) protein_coding-intron (ENSMUSG00000053799.8, intron 19 of 21) -36354 ENSMUSG00000062432.4 ENSMUSG00000062432 ENSMUST00000073391 Cyp26c1 protein_coding Interval_103369 chr3 40498911 40499094 + 0 NA Intergenic Intergenic 10772 ENSMUSG00000037884.6 ENSMUSG00000037884 ENSMUST00000202778 1700017G19Rik lincRNA Interval_42883 chr13 21034155 21035224 + 0 NA exon (ENSMUSG00000021322.8, exon 3 of 4) protein_coding-exon (ENSMUSG00000021322.8, exon 3 of 4) 40258 ENSMUSG00000042869.2 ENSMUSG00000042869 ENSMUST00000058168 Olfr1370 protein_coding Interval_140619 chr6 120146663 120147451 + 0 NA intron (ENSMUSG00000041377.12, intron 1 of 3) protein_coding-intron (ENSMUSG00000041377.12, intron 1 of 3) -3307 ENSMUSG00000095086.1 ENSMUSG00000095086 ENSMUST00000180263 Gm25327 snRNA Interval_77496 chr17 90247553 90247811 + 0 NA intron (ENSMUSG00000024109.18, intron 2 of 2) protein_coding-intron (ENSMUSG00000024109.18, intron 16 of 20) -14870 ENSMUSG00000092706.1 ENSMUSG00000092706 ENSMUST00000174965 Gm24510 miRNA Interval_8591 chr1 143626546 143626873 + 0 NA intron (ENSMUSG00000026361.9, intron 4 of 7) protein_coding-intron (ENSMUSG00000026361.9, intron 13 of 16) -13955 ENSMUSG00000033849.3 ENSMUSG00000033849 ENSMUST00000038252 B3galt2 protein_coding Interval_142851 chr6 146436902 146437838 + 0 NA intron (ENSMUSG00000030287.15, intron 1 of 18) protein_coding-intron (ENSMUSG00000030287.15, intron 2 of 56) 26237 ENSMUSG00000082120.1 ENSMUSG00000082120 ENSMUST00000117133 Gm15720 processed_pseudogene Interval_121008 chr4 152184769 152186887 + 0 NA promoter-TSS (ENSMUSG00000028937.14) protein_coding-promoter-TSS (ENSMUSG00000028937.14) -306 ENSMUSG00000028937.14 ENSMUSG00000028937 ENSMUST00000144733 Acot7 protein_coding Interval_148444 chr7 81301408 81301624 + 0 NA intron (ENSMUSG00000025584.17, intron 2 of 7) protein_coding-intron (ENSMUSG00000025584.17, intron 7 of 21) -5177 ENSMUSG00000025584.17 ENSMUSG00000025584 ENSMUST00000130494 Pde8a protein_coding Interval_81402 chr18 60522870 60523524 + 0 NA Intergenic Intergenic -15233 ENSMUSG00000024603.8 ENSMUSG00000024603 ENSMUST00000224671 Dctn4 protein_coding Interval_129163 chr5 117933137 117933515 + 0 NA intron (ENSMUSG00000029361.18, intron 19 of 27) protein_coding-intron (ENSMUSG00000029361.18, intron 20 of 28) 6192 ENSMUSG00000098072.1 ENSMUSG00000098072 ENSMUST00000182216 Gm26995 antisense Interval_117647 chr4 125252949 125253497 + 0 NA Intergenic Intergenic 24626 ENSMUSG00000087010.1 ENSMUSG00000087010 ENSMUST00000130055 1700041M05Rik lincRNA Interval_135495 chr6 39637503 39638008 + 0 NA intron (ENSMUSG00000002413.15, intron 13 of 17) protein_coding-intron (ENSMUSG00000002413.15, intron 16 of 21) 16210 ENSMUSG00000091313.1 ENSMUSG00000091313 ENSMUST00000168364 Fth-ps2 processed_pseudogene Interval_141970 chr6 136178013 136178369 + 0 NA Intergenic Intergenic -4814 ENSMUSG00000030209.14 ENSMUSG00000030209 ENSMUST00000198283 Grin2b protein_coding Interval_14596 chr10 36846110 36846705 + 0 NA Intergenic Intergenic -70476 ENSMUSG00000088423.1 ENSMUSG00000088423 ENSMUST00000157798 Gm22554 snoRNA Interval_64708 chr16 14371663 14372756 + 0 NA intron (ENSMUSG00000023088.17, intron 1 of 2) protein_coding-intron (ENSMUSG00000023088.17, intron 1 of 30) -10598 ENSMUSG00000089106.1 ENSMUSG00000089106 ENSMUST00000158481 Gm23116 snRNA Interval_80365 chr18 40203741 40204169 + 0 NA TTS (ENSMUSG00000024487.5) protein_coding-TTS (ENSMUSG00000024487.5) 15388 ENSMUSG00000024487.5 ENSMUSG00000024487 ENSMUST00000237176 Yipf5 protein_coding Interval_50714 chr14 18474775 18475455 + 0 NA Intergenic Intergenic 29240 ENSMUSG00000065858.1 ENSMUSG00000065858 ENSMUST00000083924 Gm22350 snRNA Interval_58106 chr15 27937047 27938066 + 0 NA intron (ENSMUSG00000022263.10, intron 1 of 56) protein_coding-intron (ENSMUSG00000022263.10, intron 1 of 56) 57807 ENSMUSG00000022263.10 ENSMUSG00000022263 ENSMUST00000228950 Trio protein_coding Interval_141637 chr6 131604871 131605815 + 0 NA Intergenic Intergenic 3528 ENSMUSG00000062477.5 ENSMUSG00000062477 ENSMUST00000082150 Hmgb1l processed_pseudogene Interval_111031 chr4 11321474 11322728 + 0 NA promoter-TSS (ENSMUSG00000045205.16) protein_coding-promoter-TSS (ENSMUSG00000045205.16) -1 ENSMUSG00000045205.16 ENSMUSG00000045205 ENSMUST00000148524 Dpy19l4 protein_coding Interval_166264 chr9 57880545 57880813 + 0 NA Intergenic Intergenic -31955 ENSMUSG00000055720.10 ENSMUSG00000055720 ENSMUST00000215936 Ubl7 protein_coding Interval_84530 chr19 12305792 12306238 + 0 NA Intergenic Intergenic -6885 ENSMUSG00000067513.1 ENSMUSG00000067513 ENSMUST00000087812 Olfr1436 protein_coding Interval_160236 chr8 107338869 107339059 + 0 NA promoter-TSS (ENSMUSG00000003847.16) protein_coding-promoter-TSS (ENSMUSG00000003847.16) 45494 ENSMUSG00000003847.16 ENSMUSG00000003847 ENSMUST00000147588 Nfat5 protein_coding Interval_72626 chr17 31138497 31139228 + 0 NA Intergenic Intergenic 5420 ENSMUSG00000024028.7 ENSMUSG00000024028 ENSMUST00000024826 Tff2 protein_coding Interval_6108 chr1 97051343 97051613 + 0 NA Intergenic Intergenic -25913 ENSMUSG00000100454.1 ENSMUSG00000100454 ENSMUST00000188810 Gm28901 lincRNA Interval_126293 chr5 86181342 86181583 + 0 NA TTS (ENSMUSG00000029255.8) protein_coding-TTS (ENSMUSG00000029255.8) -8723 ENSMUSG00000035898.13 ENSMUSG00000035898 ENSMUST00000147734 Uba6 protein_coding Interval_80749 chr18 46798466 46799175 + 0 NA Intergenic Intergenic 27495 ENSMUSG00000117372.1 ENSMUSG00000117372 ENSMUST00000234567 Gm49972 TEC Interval_154140 chr8 13009548 13009774 + 0 NA exon (ENSMUSG00000031442.21, exon 21 of 30) protein_coding-exon (ENSMUSG00000031442.21, exon 21 of 30) -12280 ENSMUSG00000081951.1 ENSMUSG00000081951 ENSMUST00000118696 Gm15352 processed_pseudogene Interval_73176 chr17 35276360 35276864 + 0 NA Intergenic Intergenic 2619 ENSMUSG00000092444.1 ENSMUSG00000092444 ENSMUST00000173950 Gm18733 transcribed_unprocessed_pseudogene Interval_26267 chr11 55520647 55520886 + 0 NA intron (ENSMUSG00000000263.15, intron 8 of 8) protein_coding-intron (ENSMUSG00000000263.15, intron 8 of 8) 5920 ENSMUSG00000086460.1 ENSMUSG00000086460 ENSMUST00000152968 Gm12236 antisense Interval_77445 chr17 88869869 88870573 + 0 NA Intergenic Intergenic -13599 ENSMUSG00000117566.1 ENSMUSG00000117566 ENSMUST00000234561 Gm9407 processed_pseudogene Interval_135940 chr6 48954090 48955213 + 0 NA Intergenic Intergenic -1707 ENSMUSG00000107943.1 ENSMUSG00000107943 ENSMUST00000204265 Gm18538 processed_pseudogene Interval_157627 chr8 71895163 71895625 + 0 NA exon (ENSMUSG00000056019.12, exon 4 of 4) protein_coding-exon (ENSMUSG00000056019.12, exon 4 of 4) 13027 ENSMUSG00000056019.12 ENSMUSG00000056019 ENSMUST00000034259 Zfp709 protein_coding Interval_30595 chr11 95328008 95328516 + 0 NA Intergenic Intergenic 9146 ENSMUSG00000085509.1 ENSMUSG00000085509 ENSMUST00000143302 Gm11521 antisense Interval_41294 chr12 112551567 112552665 + 0 NA Intergenic Intergenic -35369 ENSMUSG00000054013.6 ENSMUSG00000054013 ENSMUST00000222836 Tmem179 protein_coding Interval_30565 chr11 95145166 95146374 + 0 NA promoter-TSS (ENSMUSG00000020871.8) protein_coding-promoter-TSS (ENSMUSG00000020871.8) 31 ENSMUSG00000020871.8 ENSMUSG00000020871 ENSMUST00000146838 Dlx4 protein_coding Interval_105116 chr3 81711486 81712806 + 0 NA Intergenic Intergenic -9530 ENSMUSG00000104732.1 ENSMUSG00000104732 ENSMUST00000198290 Gm43346 lincRNA Interval_118804 chr4 133804347 133806081 + 0 NA Intergenic Intergenic -7495 ENSMUSG00000084555.1 ENSMUSG00000084555 ENSMUST00000122606 Gm25270 snRNA Interval_68185 chr16 67118846 67119056 + 0 NA intron (ENSMUSG00000064115.13, intron 1 of 9) protein_coding-intron (ENSMUSG00000064115.13, intron 1 of 9) 119399 ENSMUSG00000116904.1 ENSMUSG00000116904 ENSMUST00000232322 Gm49640 processed_pseudogene Interval_73240 chr17 35727652 35728248 + 0 NA Intergenic Intergenic 11856 ENSMUSG00000092219.1 ENSMUSG00000092219 ENSMUST00000173840 Gm20443 lincRNA Interval_172806 chrX 50456142 50456398 + 0 NA Intergenic Intergenic -29688 ENSMUSG00000048173.5 ENSMUSG00000048173 ENSMUST00000219631 Olfr1324 protein_coding Interval_73646 chr17 42291524 42292100 + 0 NA Intergenic Intergenic -24177 ENSMUSG00000042256.5 ENSMUSG00000042256 ENSMUST00000232968 Ptchd4 protein_coding Interval_14896 chr10 40909974 40911586 + 0 NA intron (ENSMUSG00000019831.14, intron 1 of 8) protein_coding-intron (ENSMUSG00000019831.14, intron 1 of 8) 26953 ENSMUSG00000019831.14 ENSMUSG00000019831 ENSMUST00000105509 Wasf1 protein_coding Interval_132886 chr5 148521175 148521988 + 0 NA intron (ENSMUSG00000001687.15, intron 2 of 5) protein_coding-intron (ENSMUSG00000001687.15, intron 1 of 4) 30075 ENSMUSG00000001687.15 ENSMUSG00000001687 ENSMUST00000201597 Ubl3 protein_coding Interval_70895 chr17 15714198 15715749 + 0 NA intron (ENSMUSG00000023852.14, intron 2 of 22) protein_coding-intron (ENSMUSG00000023852.14, intron 2 of 35) -23562 ENSMUSG00000023852.14 ENSMUSG00000023852 ENSMUST00000173040 Chd1 protein_coding Interval_161997 chr8 124329101 124329857 + 0 NA intron (ENSMUSG00000092329.1, intron 7 of 15) protein_coding-intron (ENSMUSG00000089704.9, intron 7 of 15) 2316 ENSMUSG00000089820.1 ENSMUSG00000089820 ENSMUST00000159796 Gm15775 antisense Interval_130778 chr5 130332274 130332806 + 0 NA intron (ENSMUSG00000056310.14, intron 14 of 15) protein_coding-intron (ENSMUSG00000056310.14, intron 14 of 15) 52090 ENSMUSG00000052014.6 ENSMUSG00000052014 ENSMUST00000063656 A330070K13Rik protein_coding Interval_91036 chr2 34605025 34605484 + 0 NA intron (ENSMUSG00000038696.14, intron 10 of 11) protein_coding-intron (ENSMUSG00000038696.14, intron 9 of 10) 40255 ENSMUSG00000081992.1 ENSMUSG00000081992 ENSMUST00000119822 Gm13408 processed_pseudogene Interval_41755 chr12 118724793 118726153 + 0 NA Intergenic Intergenic 7582 ENSMUSG00000113546.1 ENSMUSG00000113546 ENSMUST00000223539 Gm18441 processed_pseudogene Interval_146634 chr7 48917032 48918888 + 0 NA intron (ENSMUSG00000052512.17, intron 3 of 4) protein_coding-intron (ENSMUSG00000052512.17, intron 3 of 4) -7898 ENSMUSG00000110093.1 ENSMUSG00000110093 ENSMUST00000209439 Gm45282 lincRNA Interval_76368 chr17 79638945 79639337 + 0 NA intron (ENSMUSG00000036368.8, intron 2 of 2) protein_coding-intron (ENSMUSG00000036368.8, intron 2 of 10) -33259 ENSMUSG00000036368.8 ENSMUSG00000036368 ENSMUST00000224097 Rmdn2 protein_coding Interval_105384 chr3 85880635 85881068 + 0 NA intron (ENSMUSG00000031286.6, intron 1 of 1) protein_coding-intron (ENSMUSG00000031286.6, intron 1 of 1) 6665 ENSMUSG00000031286.6 ENSMUSG00000031286 ENSMUST00000033643 Glt28d2 protein_coding Interval_91046 chr2 34665132 34665362 + 0 NA Intergenic Intergenic -15007 ENSMUSG00000087635.3 ENSMUSG00000087635 ENSMUST00000117516 Gm13414 processed_pseudogene Interval_158994 chr8 88541195 88541404 + 0 NA intron (ENSMUSG00000031661.12, intron 1 of 7) protein_coding-intron (ENSMUSG00000031661.12, intron 3 of 9) -18734 ENSMUSG00000110187.1 ENSMUSG00000110187 ENSMUST00000209918 Gm45496 TEC Interval_4867 chr1 80515064 80516073 + 0 NA exon (ENSMUSG00000038608.15, exon 51 of 56) protein_coding-exon (ENSMUSG00000038608.15, exon 51 of 56) -54120 ENSMUSG00000110100.1 ENSMUSG00000110100 ENSMUST00000211023 Gm45261 protein_coding Interval_120313 chr4 145377066 145379363 + 0 NA Intergenic Intergenic -12729 ENSMUSG00000082758.1 ENSMUSG00000082758 ENSMUST00000121756 Gm13024 processed_pseudogene Interval_96592 chr2 126005844 126006296 + 0 NA intron (ENSMUSG00000027209.17, intron 11 of 15) protein_coding-intron (ENSMUSG00000027209.17, intron 12 of 16) -28588 ENSMUSG00000027208.14 ENSMUSG00000027208 ENSMUST00000110442 Fgf7 protein_coding Interval_68396 chr16 75727592 75728443 + 0 NA Intergenic Intergenic 18451 ENSMUSG00000080750.2 ENSMUSG00000080750 ENSMUST00000118757 Gm15553 processed_pseudogene Interval_45679 chr13 56794558 56794916 + 0 NA intron (ENSMUSG00000021541.14, intron 6 of 10) protein_coding-intron (ENSMUSG00000021541.14, intron 7 of 11) -40910 ENSMUSG00000110086.1 ENSMUSG00000110086 ENSMUST00000210744 Gm45623 protein_coding Interval_73443 chr17 37306938 37307593 + 0 NA Intergenic Intergenic -4633 ENSMUSG00000092077.2 ENSMUSG00000092077 ENSMUST00000058046 Olfr101 protein_coding Interval_59214 chr15 48792834 48793998 + 0 NA Intergenic Intergenic -1353 ENSMUSG00000022311.15 ENSMUSG00000022311 ENSMUST00000160655 Csmd3 protein_coding Interval_3243 chr1 55106938 55109888 + 0 NA Intergenic Intergenic 12460 ENSMUSG00000100736.1 ENSMUSG00000100736 ENSMUST00000185999 Gm5147 processed_pseudogene Interval_117762 chr4 126081443 126082160 + 0 NA intron (ENSMUSG00000042616.8, intron 5 of 10) protein_coding-intron (ENSMUSG00000042616.8, intron 4 of 9) -1127 ENSMUSG00000042616.8 ENSMUSG00000042616 ENSMUST00000129968 Oscp1 protein_coding Interval_24558 chr11 34430742 34431887 + 0 NA intron (ENSMUSG00000020143.15, intron 7 of 8) protein_coding-intron (ENSMUSG00000020143.15, intron 27 of 51) 116556 ENSMUSG00000069911.11 ENSMUSG00000069911 ENSMUST00000093192 Insyn2b protein_coding Interval_118535 chr4 132344335 132345859 + 0 NA exon (ENSMUSG00000028896.13, exon 1 of 3) protein_coding-exon (ENSMUSG00000028896.13, exon 1 of 3) 595 ENSMUSG00000028896.13 ENSMUSG00000028896 ENSMUST00000156710 Rcc1 protein_coding Interval_50658 chr14 17667508 17667912 + 0 NA intron (ENSMUSG00000021779.17, intron 1 of 1) protein_coding-intron (ENSMUSG00000021779.17, intron 1 of 9) 103412 ENSMUSG00000114281.1 ENSMUSG00000114281 ENSMUST00000225878 Gm48320 processed_pseudogene Interval_54030 chr14 64625856 64626083 + 0 NA Intergenic Intergenic -26591 ENSMUSG00000060012.9 ENSMUSG00000060012 ENSMUST00000224677 Kif13b protein_coding Interval_73684 chr17 42788878 42790336 + 0 NA Intergenic Intergenic 41423 ENSMUSG00000061665.7 ENSMUSG00000061665 ENSMUST00000233626 Cd2ap protein_coding Interval_111742 chr4 27125911 27126108 + 0 NA TTS (ENSMUSG00000083447.1) processed_pseudogene-TTS (ENSMUSG00000083447.1) 500 ENSMUSG00000083447.1 ENSMUSG00000083447 ENSMUST00000120562 Gm11904 processed_pseudogene Interval_7200 chr1 127773428 127774840 + 0 NA promoter-TSS (ENSMUSG00000026349.14) protein_coding-promoter-TSS (ENSMUSG00000026349.14) -80 ENSMUSG00000102014.1 ENSMUSG00000102014 ENSMUST00000185310 2900009J06Rik antisense Interval_17251 chr10 75298638 75298836 + 0 NA intron (ENSMUSG00000033444.14, intron 13 of 15) protein_coding-intron (ENSMUSG00000033444.14, intron 13 of 15) -15702 ENSMUSG00000112116.1 ENSMUSG00000112116 ENSMUST00000218702 Gm46234 processed_pseudogene Interval_60378 chr15 73310627 73311277 + 0 NA intron (ENSMUSG00000022607.18, intron 7 of 34) protein_coding-intron (ENSMUSG00000022607.18, intron 7 of 31) -38847 ENSMUSG00000088005.1 ENSMUSG00000088005 ENSMUST00000157380 Gm24787 snoRNA Interval_145553 chr7 35579559 35580296 + 0 NA exon (ENSMUSG00000056043.5, exon 1 of 1) protein_coding-exon (ENSMUSG00000056043.5, exon 1 of 1) 5655 ENSMUSG00000056043.5 ENSMUSG00000056043 ENSMUST00000069912 Rgs9bp protein_coding Interval_77345 chr17 88101134 88101578 + 0 NA Intergenic Intergenic -24156 ENSMUSG00000058869.9 ENSMUSG00000058869 ENSMUST00000182679 Gm4832 transcribed_processed_pseudogene Interval_31613 chr11 101719593 101720382 + 0 NA Intergenic Intergenic -13042 ENSMUSG00000034931.15 ENSMUSG00000034931 ENSMUST00000141461 Dhx8 protein_coding Interval_168329 chr9 78775171 78776106 + 0 NA Intergenic Intergenic -8106 ENSMUSG00000110809.1 ENSMUSG00000110809 ENSMUST00000215294 Gm46138 processed_pseudogene Interval_152699 chr7 136531182 136531713 + 0 NA Intergenic Intergenic -22114 ENSMUSG00000087869.1 ENSMUSG00000087869 ENSMUST00000157244 Gm24444 misc_RNA Interval_166608 chr9 61292794 61294091 + 0 NA intron (ENSMUSG00000111658.1, intron 1 of 4) lincRNA-intron (ENSMUSG00000111658.1, intron 1 of 4) 367 ENSMUSG00000111658.1 ENSMUSG00000111658 ENSMUST00000213377 B930092H01Rik lincRNA Interval_117298 chr4 122824256 122825744 + 0 NA Intergenic Intergenic -11246 ENSMUSG00000028657.14 ENSMUSG00000028657 ENSMUST00000097902 Ppt1 protein_coding Interval_147645 chr7 70576928 70577182 + 0 NA exon (ENSMUSG00000109021.1, exon 1 of 3) lincRNA-exon (ENSMUSG00000109021.1, exon 1 of 3) 571 ENSMUSG00000109021.1 ENSMUSG00000109021 ENSMUST00000208999 Gm44812 lincRNA Interval_76119 chr17 75127622 75127892 + 0 NA intron (ENSMUSG00000001870.16, intron 3 of 34) protein_coding-intron (ENSMUSG00000001870.16, intron 3 of 33) -37450 ENSMUSG00000084025.1 ENSMUSG00000084025 ENSMUST00000120159 Gm6276 processed_pseudogene Interval_17705 chr10 79663914 79664642 + 0 NA promoter-TSS (ENSMUSG00000020310.9) protein_coding-promoter-TSS (ENSMUSG00000020310.9) -309 ENSMUSG00000020310.9 ENSMUSG00000020310 ENSMUST00000217748 Madcam1 protein_coding Interval_9636 chr1 160553474 160553838 + 0 NA intron (ENSMUSG00000026721.16, intron 13 of 20) protein_coding-intron (ENSMUSG00000026721.16, intron 13 of 20) 20154 ENSMUSG00000104026.1 ENSMUSG00000104026 ENSMUST00000192582 Gm37212 TEC Interval_14193 chr10 28593024 28593224 + 0 NA intron (ENSMUSG00000019889.10, intron 30 of 30) protein_coding-intron (ENSMUSG00000019889.10, intron 31 of 31) 6131 ENSMUSG00000019889.10 ENSMUSG00000019889 ENSMUST00000220404 Ptprk protein_coding Interval_110187 chr3 154071471 154072757 + 0 NA intron (ENSMUSG00000028360.10, intron 1 of 21) protein_coding-intron (ENSMUSG00000028360.10, intron 1 of 21) 25191 ENSMUSG00000028360.10 ENSMUSG00000028360 ENSMUST00000144677 Slc44a5 protein_coding Interval_26011 chr11 53466015 53467045 + 0 NA TTS (ENSMUSG00000018387.12) protein_coding-TTS (ENSMUSG00000018387.12) 1034 ENSMUSG00000018387.12 ENSMUSG00000018387 ENSMUST00000155297 Shroom1 protein_coding Interval_113603 chr4 56937329 56937752 + 0 NA intron (ENSMUSG00000055296.14, intron 2 of 16) protein_coding-intron (ENSMUSG00000055296.14, intron 2 of 17) 9884 ENSMUSG00000055296.14 ENSMUSG00000055296 ENSMUST00000155625 Tmem245 protein_coding Interval_145411 chr7 34585998 34586206 + 0 NA Intergenic Intergenic 38896 ENSMUSG00000086631.2 ENSMUSG00000086631 ENSMUST00000206001 Gm12784 lincRNA Interval_91345 chr2 37938287 37939024 + 0 NA intron (ENSMUSG00000035392.17, intron 9 of 9) protein_coding-intron (ENSMUSG00000035392.17, intron 12 of 21) 80512 ENSMUSG00000107586.1 ENSMUSG00000107586 ENSMUST00000204461 Gm44283 TEC Interval_152737 chr7 137056028 137056616 + 0 NA intron (ENSMUSG00000054612.4, intron 2 of 4) protein_coding-intron (ENSMUSG00000054612.4, intron 2 of 4) -111498 ENSMUSG00000110174.1 ENSMUSG00000110174 ENSMUST00000211656 Gm45499 processed_pseudogene Interval_79513 chr18 32584376 32584708 + 0 NA Intergenic Intergenic -24508 ENSMUSG00000090523.2 ENSMUSG00000090523 ENSMUST00000172434 Gypc protein_coding Interval_173289 chrX 76686798 76687483 + 0 NA Intergenic Intergenic -50499 ENSMUSG00000083810.1 ENSMUSG00000083810 ENSMUST00000122362 Gm14713 processed_pseudogene Interval_46916 chr13 73383508 73383873 + 0 NA Intergenic Intergenic -36306 ENSMUSG00000113346.2 ENSMUSG00000113346 ENSMUST00000223470 Eprn lincRNA Interval_56940 chr14 123722909 123723628 + 0 NA intron (ENSMUSG00000032925.16, intron 2 of 10) protein_coding-intron (ENSMUSG00000032925.16, intron 2 of 10) -24680 ENSMUSG00000082793.2 ENSMUSG00000082793 ENSMUST00000119073 Gm9308 processed_pseudogene Interval_113678 chr4 57510804 57511031 + 0 NA intron (ENSMUSG00000090053.9, intron 1 of 6) protein_coding-intron (ENSMUSG00000090053.9, intron 1 of 6) -53368 ENSMUSG00000081615.1 ENSMUSG00000081615 ENSMUST00000121549 Gm12539 processed_pseudogene Interval_2766 chr1 44539811 44540096 + 0 NA Intergenic Intergenic -20932 ENSMUSG00000102319.1 ENSMUSG00000102319 ENSMUST00000194332 Gm37626 TEC Interval_66726 chr16 36655006 36655574 + 0 NA intron (ENSMUSG00000022901.13, intron 1 of 7) protein_coding-intron (ENSMUSG00000022901.13, intron 1 of 7) -38743 ENSMUSG00000022900.14 ENSMUSG00000022900 ENSMUST00000128084 Ildr1 protein_coding Interval_111760 chr4 27790752 27790945 + 0 NA Intergenic Intergenic 76807 ENSMUSG00000082674.1 ENSMUSG00000082674 ENSMUST00000117094 Gm11914 processed_pseudogene Interval_103888 chr3 54567529 54568164 + 0 NA Intergenic Intergenic 66722 ENSMUSG00000104831.1 ENSMUSG00000104831 ENSMUST00000197444 B020017C02Rik processed_pseudogene Interval_170368 chr9 107479032 107480298 + 0 NA intron (ENSMUSG00000010066.15, intron 3 of 37) protein_coding-intron (ENSMUSG00000010066.15, intron 3 of 37) -34634 ENSMUSG00000091425.1 ENSMUSG00000091425 ENSMUST00000164032 Gm17118 antisense Interval_86228 chr19 37955336 37956181 + 0 NA intron (ENSMUSG00000048612.16, intron 22 of 53) protein_coding-intron (ENSMUSG00000048612.16, intron 21 of 52) 85488 ENSMUSG00000118115.1 ENSMUSG00000118115 ENSMUST00000237198 Gm4757 processed_pseudogene Interval_166077 chr9 56464988 56465190 + 0 NA intron (ENSMUSG00000032329.4, intron 2 of 3) protein_coding-intron (ENSMUSG00000032329.4, intron 1 of 9) 27632 ENSMUSG00000118653.1 ENSMUSG00000118653 ENSMUST00000239472 AC159819.1 protein_coding Interval_21086 chr10 126041684 126041944 + 0 NA Intergenic Intergenic 4987 ENSMUSG00000093161.1 ENSMUSG00000093161 ENSMUST00000175420 Gm22183 miRNA Interval_168233 chr9 78090407 78091055 + 0 NA intron (ENSMUSG00000001366.14, intron 7 of 12) protein_coding-intron (ENSMUSG00000001366.14, intron 7 of 12) 17856 ENSMUSG00000001366.14 ENSMUSG00000001366 ENSMUST00000162625 Fbxo9 protein_coding Interval_68330 chr16 73252175 73254392 + 0 NA intron (ENSMUSG00000116976.1, intron 5 of 5) processed_transcript-intron (ENSMUSG00000116976.1, intron 1 of 4) 169676 ENSMUSG00000064830.1 ENSMUSG00000064830 ENSMUST00000082896 Gm25699 snRNA Interval_48169 chr13 96937119 96937417 + 0 NA intron (ENSMUSG00000091387.2, intron 2 of 2) protein_coding-intron (ENSMUSG00000091387.2, intron 2 of 2) 12579 ENSMUSG00000091387.2 ENSMUSG00000091387 ENSMUST00000171324 Gcnt4 protein_coding Interval_30071 chr11 88995831 88997465 + 0 NA promoter-TSS (ENSMUSG00000085152.1) lincRNA-promoter-TSS (ENSMUSG00000085152.1) -104 ENSMUSG00000085152.1 ENSMUSG00000085152 ENSMUST00000128078 Gm11496 lincRNA Interval_24301 chr11 32210937 32211305 + 0 NA promoter-TSS (ENSMUSG00000020282.18) protein_coding-promoter-TSS (ENSMUSG00000020282.18) 5663 ENSMUSG00000040767.10 ENSMUSG00000040767 ENSMUST00000125837 Snrnp25 protein_coding Interval_95664 chr2 113828729 113829591 + 0 NA promoter-TSS (ENSMUSG00000023236.7) protein_coding-promoter-TSS (ENSMUSG00000023236.7) -398 ENSMUSG00000023236.7 ENSMUSG00000023236 ENSMUST00000139975 Scg5 protein_coding Interval_103560 chr3 49434727 49434948 + 0 NA Intergenic Intergenic -52091 ENSMUSG00000104309.1 ENSMUSG00000104309 ENSMUST00000193146 Gm5846 processed_pseudogene Interval_23414 chr11 22461060 22461877 + 0 NA Intergenic Intergenic -21693 ENSMUSG00000085856.1 ENSMUSG00000085856 ENSMUST00000127483 Gm12050 lincRNA Interval_35593 chr12 25131258 25131513 + 0 NA exon (ENSMUSG00000112937.1, exon 3 of 3) lincRNA-exon (ENSMUSG00000112937.1, exon 3 of 3) 2211 ENSMUSG00000112937.1 ENSMUSG00000112937 ENSMUST00000223429 Gm17746 lincRNA Interval_121621 chr5 3988183 3990061 + 0 NA exon (ENSMUSG00000105893.1, exon 1 of 1) processed_pseudogene-exon (ENSMUSG00000105893.1, exon 1 of 1) 116 ENSMUSG00000105893.1 ENSMUSG00000105893 ENSMUST00000200591 Wdr46-ps processed_pseudogene Interval_114501 chr4 81330025 81330594 + 0 NA intron (ENSMUSG00000028402.18, intron 1 of 2) protein_coding-intron (ENSMUSG00000028402.18, intron 22 of 46) 8095 ENSMUSG00000077607.1 ENSMUSG00000077607 ENSMUST00000104419 Gm25803 snoRNA Interval_33232 chr11 115381462 115382753 + 0 NA exon (ENSMUSG00000050910.5, exon 1 of 5) protein_coding-exon (ENSMUSG00000050910.5, exon 1 of 5) 191 ENSMUSG00000050910.5 ENSMUSG00000050910 ENSMUST00000053288 Cdr2l protein_coding Interval_52540 chr14 47385934 47386242 + 0 NA TTS (ENSMUSG00000050335.17) protein_coding-TTS (ENSMUSG00000050335.17) 12172 ENSMUSG00000050335.17 ENSMUSG00000050335 ENSMUST00000146468 Lgals3 protein_coding Interval_5215 chr1 86492145 86492421 + 0 NA Intergenic Intergenic 18624 ENSMUSG00000101328.1 ENSMUSG00000101328 ENSMUST00000163337 Rpl30-ps6 processed_pseudogene Interval_119847 chr4 140469149 140470453 + 0 NA Intergenic Intergenic -23637 ENSMUSG00000118416.1 ENSMUSG00000118416 ENSMUST00000238366 Gm50453 unitary_pseudogene Interval_149738 chr7 101044080 101044619 + 0 NA Intergenic Intergenic 17126 ENSMUSG00000109171.1 ENSMUSG00000109171 ENSMUST00000207053 Gm5735 processed_pseudogene Interval_134720 chr6 30832052 30833001 + 0 NA intron (ENSMUSG00000025607.15, intron 9 of 23) protein_coding-intron (ENSMUSG00000025607.15, intron 9 of 23) 64268 ENSMUSG00000025607.15 ENSMUSG00000025607 ENSMUST00000134137 Copg2 protein_coding Interval_43144 chr13 24638264 24639530 + 0 NA exon (ENSMUSG00000036006.20, exon 1 of 15) protein_coding-exon (ENSMUSG00000036006.20, exon 1 of 15) -34130 ENSMUSG00000085603.3 ENSMUSG00000085603 ENSMUST00000127863 Gm11346 transcribed_processed_pseudogene Interval_164570 chr9 38954044 38955602 + 0 NA Intergenic Intergenic 8909 ENSMUSG00000110849.1 ENSMUSG00000110849 ENSMUST00000217375 CT025680.1 unprocessed_pseudogene Interval_89607 chr2 23202887 23203787 + 0 NA intron (ENSMUSG00000081648.1, intron 1 of 1) processed_pseudogene-intron (ENSMUSG00000081648.1, intron 1 of 1) 1304 ENSMUSG00000081648.1 ENSMUSG00000081648 ENSMUST00000117205 Gm13423 processed_pseudogene Interval_60727 chr15 76394549 76395934 + 0 NA intron (ENSMUSG00000022558.16, intron 4 of 10) protein_coding-intron (ENSMUSG00000022558.16, intron 3 of 30) 14688 ENSMUSG00000022558.16 ENSMUSG00000022558 ENSMUST00000161350 Mroh1 protein_coding Interval_30090 chr11 89115131 89115340 + 0 NA Intergenic Intergenic 11471 ENSMUSG00000086919.1 ENSMUSG00000086919 ENSMUST00000138295 Gm11497 lincRNA Interval_10147 chr1 166100140 166100433 + 0 NA exon (ENSMUSG00000026564.9, exon 6 of 6) protein_coding-exon (ENSMUSG00000026564.9, exon 6 of 6) 7871 ENSMUSG00000102484.1 ENSMUSG00000102484 ENSMUST00000191624 Gm37923 lincRNA Interval_111520 chr4 22390272 22390604 + 0 NA intron (ENSMUSG00000040410.14, intron 4 of 8) protein_coding-intron (ENSMUSG00000040410.14, intron 4 of 8) -6132 ENSMUSG00000077561.1 ENSMUSG00000077561 ENSMUST00000104373 Gm24607 snoRNA Interval_90711 chr2 32058593 32058834 + 0 NA intron (ENSMUSG00000050592.8, intron 3 of 5) protein_coding-intron (ENSMUSG00000050592.8, intron 3 of 5) 6198 ENSMUSG00000090157.7 ENSMUSG00000090157 ENSMUST00000156387 Gm16534 processed_transcript Interval_15988 chr10 59950662 59953039 + 0 NA promoter-TSS (ENSMUSG00000020108.4) protein_coding-promoter-TSS (ENSMUSG00000020108.4) -16 ENSMUSG00000020108.4 ENSMUSG00000020108 ENSMUST00000020308 Ddit4 protein_coding Interval_26736 chr11 60095137 60095646 + 0 NA Intergenic Intergenic -4156 ENSMUSG00000098502.1 ENSMUSG00000098502 ENSMUST00000183502 Gm27511 misc_RNA Interval_131266 chr5 136072952 136074251 + 0 NA Intergenic Intergenic 16334 ENSMUSG00000006143.12 ENSMUSG00000006143 ENSMUST00000122979 Upk3bl protein_coding Interval_134630 chr6 30058344 30058548 + 0 NA intron (ENSMUSG00000058440.14, intron 1 of 2) protein_coding-intron (ENSMUSG00000058440.14, intron 1 of 11) -31449 ENSMUSG00000058440.14 ENSMUSG00000058440 ENSMUST00000132866 Nrf1 protein_coding Interval_65226 chr16 20679799 20680068 + 0 NA TTS (ENSMUSG00000045983.16) protein_coding-TTS (ENSMUSG00000045983.16) -4306 ENSMUSG00000077239.1 ENSMUSG00000077239 ENSMUST00000104051 Snord66 snoRNA Interval_68436 chr16 76521289 76521615 + 0 NA Intergenic Intergenic -18543 ENSMUSG00000109338.2 ENSMUSG00000109338 ENSMUST00000207575 Gm45030 lincRNA Interval_79291 chr18 30163755 30163991 + 0 NA Intergenic Intergenic -103376 ENSMUSG00000117465.1 ENSMUSG00000117465 ENSMUST00000234467 Gm49980 lincRNA Interval_168553 chr9 83524008 83524250 + 0 NA Intergenic Intergenic -24200 ENSMUSG00000032261.16 ENSMUSG00000032261 ENSMUST00000185664 Sh3bgrl2 protein_coding Interval_127427 chr5 103855582 103857509 + 0 NA Intergenic Intergenic 17824 ENSMUSG00000029312.12 ENSMUSG00000029312 ENSMUST00000147184 Klhl8 protein_coding Interval_75562 chr17 68069122 68069709 + 0 NA intron (ENSMUSG00000117243.1, intron 1 of 3) lincRNA-intron (ENSMUSG00000117243.1, intron 1 of 3) 44971 ENSMUSG00000117208.1 ENSMUSG00000117208 ENSMUST00000233735 Gm49945 lincRNA Interval_78853 chr18 20980366 20980820 + 0 NA intron (ENSMUSG00000033107.6, intron 4 of 5) protein_coding-intron (ENSMUSG00000033107.6, intron 4 of 5) 19121 ENSMUSG00000033107.6 ENSMUSG00000033107 ENSMUST00000234316 Rnf125 protein_coding Interval_78530 chr18 14481410 14481643 + 0 NA Intergenic Intergenic -10479 ENSMUSG00000117607.1 ENSMUSG00000117607 ENSMUST00000234589 Gm50098 processed_pseudogene Interval_142329 chr6 140664769 140664960 + 0 NA intron (ENSMUSG00000030232.18, intron 8 of 8) protein_coding-intron (ENSMUSG00000030232.18, intron 8 of 8) 28126 ENSMUSG00000030232.18 ENSMUSG00000030232 ENSMUST00000160772 Aebp2 protein_coding Interval_122083 chr5 16652140 16652347 + 0 NA Intergenic Intergenic 46521 ENSMUSG00000105660.1 ENSMUSG00000105660 ENSMUST00000200612 Gm42975 TEC Interval_107991 chr3 119094734 119096744 + 0 NA intron (ENSMUSG00000033308.16, intron 14 of 22) protein_coding-intron (ENSMUSG00000033308.16, intron 14 of 22) 227495 ENSMUSG00000106542.1 ENSMUSG00000106542 ENSMUST00000197510 Gm43410 TEC Interval_65408 chr16 22187138 22188070 + 0 NA Intergenic Intergenic -36640 ENSMUSG00000064686.1 ENSMUSG00000064686 ENSMUST00000082752 Gm25810 snRNA Interval_107534 chr3 108346505 108347261 + 0 NA intron (ENSMUSG00000068747.14, intron 14 of 20) protein_coding-intron (ENSMUSG00000068747.14, intron 14 of 19) -14668 ENSMUSG00000078601.4 ENSMUSG00000078601 ENSMUST00000125412 Gm12525 lincRNA Interval_25849 chr11 52127796 52130899 + 0 NA Intergenic Intergenic 2601 ENSMUSG00000092870.1 ENSMUSG00000092870 ENSMUST00000175129 Mir3061 miRNA Interval_125559 chr5 71094953 71096674 + 0 NA promoter-TSS (ENSMUSG00000000560.9) protein_coding-promoter-TSS (ENSMUSG00000000560.9) -613 ENSMUSG00000000560.9 ENSMUSG00000000560 ENSMUST00000199012 Gabra2 protein_coding Interval_72930 chr17 33590203 33591047 + 0 NA intron (ENSMUSG00000024300.17, intron 5 of 17) protein_coding-intron (ENSMUSG00000024300.17, intron 15 of 27) -7516 ENSMUSG00000024300.17 ENSMUSG00000024300 ENSMUST00000235099 Myo1f protein_coding Interval_131603 chr5 138702943 138704553 + 0 NA Intergenic Intergenic -21647 ENSMUSG00000103298.1 ENSMUSG00000103298 ENSMUST00000193602 Gm38232 TEC Interval_101470 chr2 181618261 181619396 + 0 NA intron (ENSMUSG00000002455.14, intron 3 of 11) protein_coding-intron (ENSMUSG00000002455.14, intron 3 of 20) 17455 ENSMUSG00000002455.14 ENSMUSG00000002455 ENSMUST00000139955 Prpf6 protein_coding Interval_6277 chr1 105179320 105179935 + 0 NA Intergenic Intergenic 63173 ENSMUSG00000099669.1 ENSMUSG00000099669 ENSMUST00000187882 Gm29012 lincRNA Interval_104800 chr3 73773154 73773421 + 0 NA Intergenic Intergenic -65020 ENSMUSG00000027792.11 ENSMUSG00000027792 ENSMUST00000153917 Bche protein_coding Interval_157514 chr8 71080782 71081935 + 0 NA intron (ENSMUSG00000110554.1, intron 5 of 14) lincRNA-intron (ENSMUSG00000101854.2, intron 1 of 4) 4400 ENSMUSG00000101854.2 ENSMUSG00000101854 ENSMUST00000170101 1700026F02Rik lincRNA Interval_11542 chr1 182563207 182564631 + 0 NA Intergenic Intergenic -1088 ENSMUSG00000038599.14 ENSMUSG00000038599 ENSMUST00000192671 Capn8 protein_coding Interval_24264 chr11 31943863 31944076 + 0 NA Intergenic Intergenic -21623 ENSMUSG00000020299.6 ENSMUSG00000020299 ENSMUST00000102829 4930524B15Rik protein_coding Interval_124936 chr5 61117380 61117823 + 0 NA Intergenic Intergenic -171952 ENSMUSG00000105903.1 ENSMUSG00000105903 ENSMUST00000199566 1700014F14Rik lincRNA Interval_80130 chr18 37763334 37763764 + 0 NA exon (ENSMUSG00000103081.3, exon 1 of 4) polymorphic_pseudogene-exon (ENSMUSG00000103081.3, exon 1 of 4) 1748 ENSMUSG00000103081.3 ENSMUSG00000103081 ENSMUST00000195764 Pcdhgb8 polymorphic_pseudogene Interval_56289 chr14 116609187 116609375 + 0 NA Intergenic Intergenic -140934 ENSMUSG00000104296.1 ENSMUSG00000104296 ENSMUST00000193536 Gm38045 TEC Interval_62126 chr15 87543804 87545263 + 0 NA exon (ENSMUSG00000054863.9, exon 1 of 4) protein_coding-exon (ENSMUSG00000054863.9, exon 1 of 4) 234 ENSMUSG00000054863.9 ENSMUSG00000054863 ENSMUST00000068088 Tafa5 protein_coding Interval_69660 chr16 94997069 94998420 + 0 NA promoter-TSS (ENSMUSG00000043301.16) protein_coding-promoter-TSS (ENSMUSG00000043301.16) -104660 ENSMUSG00000116667.1 ENSMUSG00000116667 ENSMUST00000232306 Gm49641 processed_pseudogene Interval_138630 chr6 90550205 90551618 + 0 NA promoter-TSS (ENSMUSG00000030088.15) protein_coding-promoter-TSS (ENSMUSG00000030088.15) 63 ENSMUSG00000030088.15 ENSMUSG00000030088 ENSMUST00000137669 Aldh1l1 protein_coding Interval_101808 chr3 9645800 9646965 + 0 NA Intergenic Intergenic -10138 ENSMUSG00000103876.1 ENSMUSG00000103876 ENSMUST00000195844 Gm17806 processed_pseudogene Interval_28692 chr11 77775446 77776397 + 0 NA intron (ENSMUSG00000000631.20, intron 1 of 40) protein_coding-intron (ENSMUSG00000000631.20, intron 1 of 1) 11826 ENSMUSG00000069804.2 ENSMUSG00000069804 ENSMUST00000092883 Gm10277 protein_coding Interval_170072 chr9 104239211 104240527 + 0 NA intron (ENSMUSG00000032560.14, intron 2 of 3) protein_coding-intron (ENSMUSG00000032560.14, intron 2 of 55) -22236 ENSMUSG00000104040.1 ENSMUSG00000104040 ENSMUST00000192580 Gm37563 TEC Interval_137616 chr6 75947309 75947536 + 0 NA Intergenic Intergenic 27561 ENSMUSG00000107880.1 ENSMUSG00000107880 ENSMUST00000203510 Gm44113 lincRNA Interval_61969 chr15 85567459 85569718 + 0 NA intron (ENSMUSG00000022382.15, intron 1 of 3) protein_coding-intron (ENSMUSG00000022382.15, intron 1 of 3) -1566 ENSMUSG00000022382.15 ENSMUSG00000022382 ENSMUST00000230299 Wnt7b protein_coding Interval_15749 chr10 55948633 55949466 + 0 NA Intergenic Intergenic 152954 ENSMUSG00000112528.1 ENSMUSG00000112528 ENSMUST00000218919 Gm29794 processed_pseudogene Interval_58104 chr15 27931609 27931854 + 0 NA intron (ENSMUSG00000022263.10, intron 1 of 56) protein_coding-intron (ENSMUSG00000022263.10, intron 1 of 56) 63632 ENSMUSG00000022263.10 ENSMUSG00000022263 ENSMUST00000228950 Trio protein_coding Interval_107587 chr3 108713233 108713439 + 0 NA TTS (ENSMUSG00000098800.1) antisense-TTS (ENSMUSG00000098800.1) 4428 ENSMUSG00000098800.1 ENSMUSG00000098800 ENSMUST00000184260 Gm27244 antisense Interval_11490 chr1 182162786 182163376 + 0 NA intron (ENSMUSG00000091013.3, intron 1 of 2) protein_coding-intron (ENSMUSG00000091013.3, intron 1 of 2) 1405 ENSMUSG00000091013.3 ENSMUSG00000091013 ENSMUST00000169123 Vmn1r1 protein_coding Interval_89680 chr2 24490474 24491274 + 0 NA Intergenic Intergenic -3194 ENSMUSG00000082307.3 ENSMUSG00000082307 ENSMUST00000119097 Gm13418 processed_pseudogene Interval_129932 chr5 123134686 123136938 + 0 NA promoter-TSS (ENSMUSG00000104156.2) lincRNA-promoter-TSS (ENSMUSG00000104156.2) 1873 ENSMUSG00000104156.2 ENSMUSG00000104156 ENSMUST00000192791 Gm38102 lincRNA Interval_68990 chr16 89976683 89977896 + 0 NA intron (ENSMUSG00000002489.16, intron 2 of 11) protein_coding-intron (ENSMUSG00000002489.16, intron 2 of 11) -112694 ENSMUSG00000116536.1 ENSMUSG00000116536 ENSMUST00000232386 Gm2805 processed_pseudogene Interval_158102 chr8 78738109 78739037 + 0 NA Intergenic Intergenic 35972 ENSMUSG00000112190.1 ENSMUSG00000112190 ENSMUST00000218647 Gm47209 unitary_pseudogene Interval_106156 chr3 93801128 93801716 + 0 NA Intergenic Intergenic 5024 ENSMUSG00000060256.1 ENSMUSG00000060256 ENSMUST00000075953 Tdpoz4 protein_coding Interval_67359 chr16 47889278 47889653 + 0 NA Intergenic Intergenic 131025 ENSMUSG00000088083.1 ENSMUSG00000088083 ENSMUST00000157458 Gm25339 misc_RNA Interval_72897 chr17 33022931 33023670 + 0 NA intron (ENSMUSG00000067430.7, intron 1 of 3) protein_coding-intron (ENSMUSG00000067430.7, intron 1 of 3) 9868 ENSMUSG00000067430.7 ENSMUSG00000067430 ENSMUST00000124465 Zfp763 protein_coding Interval_34606 chr12 7662230 7662484 + 0 NA intron (ENSMUSG00000112323.1, intron 3 of 5) lincRNA-intron (ENSMUSG00000112323.1, intron 3 of 5) 197334 ENSMUSG00000112323.1 ENSMUSG00000112323 ENSMUST00000218503 Gm32828 lincRNA Interval_87263 chr19 47267040 47267963 + 0 NA exon (ENSMUSG00000053617.12, exon 15 of 15) protein_coding-exon (ENSMUSG00000053617.12, exon 15 of 15) 6088 ENSMUSG00000098786.1 ENSMUSG00000098786 ENSMUST00000183658 Mir6995 miRNA Interval_123914 chr5 36494219 36494418 + 0 NA promoter-TSS (ENSMUSG00000029192.17) protein_coding-promoter-TSS (ENSMUSG00000029192.17) 9730 ENSMUSG00000050677.2 ENSMUSG00000050677 ENSMUST00000060100 Ccdc96 protein_coding Interval_151305 chr7 120851741 120852306 + 0 NA intron (ENSMUSG00000035064.17, intron 1 of 17) protein_coding-intron (ENSMUSG00000035064.17, intron 1 of 17) 23275 ENSMUSG00000085118.2 ENSMUSG00000085118 ENSMUST00000141810 Gm15774 antisense Interval_99773 chr2 164822648 164824472 + 0 NA intron (ENSMUSG00000017764.2, intron 1 of 1) protein_coding-intron (ENSMUSG00000017764.2, intron 1 of 1) 547 ENSMUSG00000017764.2 ENSMUSG00000017764 ENSMUST00000132282 Zswim1 protein_coding Interval_143118 chr6 149466753 149467338 + 0 NA intron (ENSMUSG00000003452.15, intron 1 of 9) protein_coding-intron (ENSMUSG00000003452.15, intron 1 of 9) -32572 ENSMUSG00000082072.1 ENSMUSG00000082072 ENSMUST00000119145 Gm15785 processed_pseudogene Interval_55047 chr14 77504650 77504822 + 0 NA intron (ENSMUSG00000067973.11, intron 1 of 5) protein_coding-intron (ENSMUSG00000022012.9, intron 5 of 18) -3296 ENSMUSG00000067973.11 ENSMUSG00000067973 ENSMUST00000163416 Gm6994 antisense Interval_91480 chr2 39179316 39180072 + 0 NA exon (ENSMUSG00000107955.1, exon 1 of 1) TEC-exon (ENSMUSG00000107955.1, exon 1 of 1) 2347 ENSMUSG00000107955.1 ENSMUSG00000107955 ENSMUST00000203419 Gm44027 TEC Interval_15903 chr10 59102725 59104156 + 0 NA intron (ENSMUSG00000037990.18, intron 7 of 9) protein_coding-intron (ENSMUSG00000037990.18, intron 5 of 5) -92259 ENSMUSG00000088744.1 ENSMUSG00000088744 ENSMUST00000158119 Gm23223 snoRNA Interval_68038 chr16 64508085 64508282 + 0 NA intron (ENSMUSG00000068167.6, intron 1 of 2) protein_coding-intron (ENSMUSG00000068167.6, intron 1 of 2) 94225 ENSMUSG00000068167.6 ENSMUSG00000068167 ENSMUST00000089279 Csnka2ip protein_coding Interval_72802 chr17 32249772 32250302 + 0 NA intron (ENSMUSG00000024002.18, intron 1 of 8) protein_coding-intron (ENSMUSG00000024002.18, intron 2 of 19) 7874 ENSMUSG00000116414.2 ENSMUSG00000116414 ENSMUST00000230961 Gm4432 processed_pseudogene Interval_152478 chr7 133275022 133275622 + 0 NA Intergenic Intergenic 57879 ENSMUSG00000109619.1 ENSMUSG00000109619 ENSMUST00000209700 Gm45672 lincRNA Interval_75403 chr17 66374673 66375892 + 0 NA promoter-TSS (ENSMUSG00000052105.17) protein_coding-promoter-TSS (ENSMUSG00000052105.17) 38702 ENSMUSG00000093686.1 ENSMUSG00000093686 ENSMUST00000177415 Gm4705 processed_pseudogene Interval_169505 chr9 98587838 98588085 + 0 NA TTS (ENSMUSG00000032459.9) protein_coding-TTS (ENSMUSG00000032459.9) 615 ENSMUSG00000032458.6 ENSMUSG00000032458 ENSMUST00000187151 Copb2 protein_coding Interval_87731 chr19 55498848 55499600 + 0 NA intron (ENSMUSG00000024983.10, intron 6 of 7) protein_coding-intron (ENSMUSG00000024983.10, intron 6 of 7) 182897 ENSMUSG00000024983.10 ENSMUSG00000024983 ENSMUST00000224396 Vti1a protein_coding Interval_136617 chr6 56714580 56715557 + 0 NA exon (ENSMUSG00000029787.10, exon 1 of 16) protein_coding-exon (ENSMUSG00000029787.10, exon 1 of 16) 169 ENSMUSG00000029787.10 ENSMUSG00000029787 ENSMUST00000176560 Avl9 protein_coding Interval_162100 chr8 125091044 125091701 + 0 NA TTS (ENSMUSG00000043051.17) protein_coding-TTS (ENSMUSG00000043051.17) 3385 ENSMUSG00000043051.17 ENSMUSG00000043051 ENSMUST00000126111 Disc1 protein_coding Interval_112562 chr4 43186219 43186434 + 0 NA intron (ENSMUSG00000028456.18, intron 12 of 40) protein_coding-intron (ENSMUSG00000028456.18, intron 10 of 38) 14887 ENSMUSG00000089028.1 ENSMUSG00000089028 ENSMUST00000158403 Gm25010 snRNA Interval_36145 chr12 36318773 36319043 + 0 NA TTS (ENSMUSG00000036169.6) protein_coding-TTS (ENSMUSG00000036169.6) 4769 ENSMUSG00000036169.6 ENSMUSG00000036169 ENSMUST00000041407 Sostdc1 protein_coding Interval_65878 chr16 29995865 29997199 + 0 NA Intergenic Intergenic -12135 ENSMUSG00000097184.2 ENSMUSG00000097184 ENSMUST00000181485 4632428C04Rik lincRNA Interval_36690 chr12 52090505 52090695 + 0 NA Intergenic Intergenic 11586 ENSMUSG00000112063.1 ENSMUSG00000112063 ENSMUST00000218420 Gm32220 processed_pseudogene Interval_146229 chr7 44856714 44858259 + 0 NA promoter-TSS (ENSMUSG00000002963.17) protein_coding-promoter-TSS (ENSMUSG00000002963.17) -1010 ENSMUSG00000002963.17 ENSMUSG00000002963 ENSMUST00000144669 Pnkp protein_coding Interval_35005 chr12 16587883 16589899 + 0 NA intron (ENSMUSG00000020593.16, intron 1 of 20) protein_coding-intron (ENSMUSG00000020593.16, intron 1 of 20) 22075 ENSMUSG00000020593.16 ENSMUSG00000020593 ENSMUST00000221146 Lpin1 protein_coding Interval_25852 chr11 52143464 52144329 + 0 NA TTS (ENSMUSG00000062204.1) protein_coding-TTS (ENSMUSG00000062204.1) 1632 ENSMUSG00000062204.1 ENSMUSG00000062204 ENSMUST00000078264 Olfr1373 protein_coding Interval_114631 chr4 83309252 83309444 + 0 NA intron (ENSMUSG00000038172.14, intron 1 of 19) protein_coding-intron (ENSMUSG00000038172.14, intron 1 of 6) -23438 ENSMUSG00000096801.1 ENSMUSG00000096801 ENSMUST00000083017 Gm23412 snRNA Interval_167758 chr9 72573367 72573924 + 0 NA intron (ENSMUSG00000037674.15, intron 2 of 5) protein_coding-intron (ENSMUSG00000037674.15, intron 1 of 8) -21278 ENSMUSG00000102672.1 ENSMUSG00000102672 ENSMUST00000192251 Gm37105 TEC Interval_83925 chr19 5636842 5638210 + 0 NA promoter-TSS (ENSMUSG00000024927.8) protein_coding-promoter-TSS (ENSMUSG00000024927.8) -418 ENSMUSG00000024927.8 ENSMUSG00000024927 ENSMUST00000237361 Rela protein_coding Interval_31905 chr11 103749229 103750415 + 0 NA promoter-TSS (ENSMUSG00000018486.2) protein_coding-promoter-TSS (ENSMUSG00000018486.2) -1 ENSMUSG00000018486.2 ENSMUSG00000018486 ENSMUST00000018630 Wnt9b protein_coding Interval_12085 chr1 189649842 189650441 + 0 NA intron (ENSMUSG00000026605.14, intron 15 of 17) protein_coding-intron (ENSMUSG00000026605.14, intron 15 of 17) -9907 ENSMUSG00000103087.1 ENSMUSG00000103087 ENSMUST00000192679 Gm38122 TEC Interval_76768 chr17 83913809 83914016 + 0 NA Intergenic Intergenic -4025 ENSMUSG00000117442.1 ENSMUSG00000117442 ENSMUST00000234364 1810073O08Rik lincRNA Interval_125867 chr5 75153168 75153644 + 0 NA promoter-TSS (ENSMUSG00000029231.15) protein_coding-promoter-TSS (ENSMUSG00000029231.15) 247 ENSMUSG00000106760.1 ENSMUSG00000106760 ENSMUST00000202475 Gm42802 antisense Interval_103960 chr3 55523659 55523880 + 0 NA intron (ENSMUSG00000027797.15, intron 13 of 13) protein_coding-intron (ENSMUSG00000027797.15, intron 16 of 16) 6200 ENSMUSG00000106651.1 ENSMUSG00000106651 ENSMUST00000197563 Gm42608 TEC Interval_3862 chr1 63886049 63886358 + 0 NA Intergenic Intergenic -31645 ENSMUSG00000082373.2 ENSMUSG00000082373 ENSMUST00000120486 Gm13754 unitary_pseudogene Interval_100000 chr2 166355151 166355622 + 0 NA Intergenic Intergenic 42771 ENSMUSG00000087617.1 ENSMUSG00000087617 ENSMUST00000132465 Gm14268 lincRNA Interval_148079 chr7 79096230 79097143 + 0 NA exon (ENSMUSG00000030607.7, exon 11 of 17) protein_coding-exon (ENSMUSG00000030607.7, exon 11 of 17) -3065 ENSMUSG00000030607.7 ENSMUSG00000030607 ENSMUST00000206779 Acan protein_coding Interval_24263 chr11 31940956 31943161 + 0 NA Intergenic Intergenic -23534 ENSMUSG00000020299.6 ENSMUSG00000020299 ENSMUST00000102829 4930524B15Rik protein_coding Interval_90782 chr2 32583278 32583713 + 0 NA exon (ENSMUSG00000046854.16, exon 10 of 10) protein_coding-exon (ENSMUSG00000046854.16, exon 10 of 10) -4086 ENSMUSG00000079442.12 ENSMUSG00000079442 ENSMUST00000146557 St6galnac4 protein_coding Interval_77590 chr17 92607597 92608692 + 0 NA Intergenic Intergenic -7618 ENSMUSG00000117354.1 ENSMUSG00000117354 ENSMUST00000234942 Gm49995 processed_pseudogene Interval_34611 chr12 7865371 7866147 + 0 NA Intergenic Intergenic 5859 ENSMUSG00000073233.4 ENSMUSG00000073233 ENSMUST00000101625 Nfyc-ps processed_pseudogene Interval_76543 chr17 80898227 80899136 + 0 NA intron (ENSMUSG00000112121.1, intron 1 of 5) lincRNA-intron (ENSMUSG00000112121.1, intron 1 of 4) 1888 ENSMUSG00000112121.1 ENSMUSG00000112121 ENSMUST00000220067 C230072F16Rik lincRNA Interval_94543 chr2 92055386 92056223 + 0 NA intron (ENSMUSG00000087018.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000087018.1, intron 1 of 1) 3565 ENSMUSG00000087018.1 ENSMUSG00000087018 ENSMUST00000123840 2900072N19Rik lincRNA Interval_92532 chr2 60382819 60385083 + 0 NA promoter-TSS (ENSMUSG00000026980.15) protein_coding-promoter-TSS (ENSMUSG00000026980.15) -648 ENSMUSG00000026980.15 ENSMUSG00000026980 ENSMUST00000028362 Ly75 protein_coding Interval_54673 chr14 73169722 73170318 + 0 NA intron (ENSMUSG00000022106.14, intron 10 of 14) protein_coding-intron (ENSMUSG00000022106.14, intron 10 of 14) 17301 ENSMUSG00000090706.1 ENSMUSG00000090706 ENSMUST00000168470 Gm17233 antisense Interval_16513 chr10 63292723 63293207 + 0 NA intron (ENSMUSG00000096991.1, intron 1 of 1) protein_coding-intron (ENSMUSG00000020064.9, intron 15 of 24) 2461 ENSMUSG00000020064.9 ENSMUSG00000020064 ENSMUST00000219789 Herc4 protein_coding Interval_127314 chr5 102651223 102652040 + 0 NA intron (ENSMUSG00000057315.14, intron 2 of 2) protein_coding-intron (ENSMUSG00000057315.14, intron 1 of 8) -157418 ENSMUSG00000057315.14 ENSMUSG00000057315 ENSMUST00000070000 Arhgap24 protein_coding Interval_20900 chr10 121856107 121856487 + 0 NA intron (ENSMUSG00000020121.15, intron 6 of 21) protein_coding-intron (ENSMUSG00000020121.15, intron 6 of 21) -24239 ENSMUSG00000112596.1 ENSMUSG00000112596 ENSMUST00000218664 Gm48804 TEC Interval_146913 chr7 55824452 55824673 + 0 NA intron (ENSMUSG00000033790.11, intron 19 of 20) protein_coding-intron (ENSMUSG00000033790.11, intron 19 of 22) 30397 ENSMUSG00000033790.11 ENSMUSG00000033790 ENSMUST00000206133 Tubgcp5 protein_coding Interval_111508 chr4 22274221 22275252 + 0 NA Intergenic Intergenic -1097 ENSMUSG00000083376.1 ENSMUSG00000083376 ENSMUST00000121463 Gm11882 processed_pseudogene Interval_113824 chr4 59135520 59135973 + 0 NA intron (ENSMUSG00000086660.1, intron 1 of 1) protein_coding-intron (ENSMUSG00000038598.9, intron 1 of 27) 1708 ENSMUSG00000086660.1 ENSMUSG00000086660 ENSMUST00000132140 Gm12594 sense_intronic Interval_9401 chr1 156836025 156836407 + 0 NA promoter-TSS (ENSMUSG00000101964.1) transcribed_processed_pseudogene-promoter-TSS (ENSMUSG00000101964.1) -277 ENSMUSG00000101964.1 ENSMUSG00000101964 ENSMUST00000190758 Gm28693 transcribed_processed_pseudogene Interval_100170 chr2 167449616 167449853 + 0 NA intron (ENSMUSG00000039463.14, intron 7 of 16) protein_coding-intron (ENSMUSG00000039463.14, intron 7 of 16) -1321 ENSMUSG00000039463.14 ENSMUSG00000039463 ENSMUST00000148454 Slc9a8 protein_coding Interval_149629 chr7 100166765 100166977 + 0 NA Intergenic Intergenic 7512 ENSMUSG00000030725.4 ENSMUSG00000030725 ENSMUST00000207825 Lipt2 protein_coding Interval_24463 chr11 33458009 33458327 + 0 NA intron (ENSMUSG00000040594.19, intron 12 of 20) protein_coding-intron (ENSMUSG00000040594.19, intron 12 of 27) -5654 ENSMUSG00000040594.19 ENSMUSG00000040594 ENSMUST00000147751 Ranbp17 protein_coding Interval_23650 chr11 24078970 24082295 + 0 NA promoter-TSS (ENSMUSG00000000861.15) protein_coding-promoter-TSS (ENSMUSG00000000861.15) 4073 ENSMUSG00000085167.1 ENSMUSG00000085167 ENSMUST00000148087 Gm12063 lincRNA Interval_136257 chr6 52321995 52323608 + 0 NA Intergenic Intergenic 9249 ENSMUSG00000005503.8 ENSMUSG00000005503 ENSMUST00000129243 Evx1 protein_coding Interval_128912 chr5 116037463 116038413 + 0 NA TTS (ENSMUSG00000079278.2) protein_coding-TTS (ENSMUSG00000079278.2) -5625 ENSMUSG00000090728.1 ENSMUSG00000090728 ENSMUST00000164753 Gm17420 pseudogene Interval_23770 chr11 26071784 26072313 + 0 NA intron (ENSMUSG00000032985.15, intron 1 of 5) protein_coding-intron (ENSMUSG00000032985.15, intron 1 of 6) -130192 ENSMUSG00000099015.1 ENSMUSG00000099015 ENSMUST00000185114 Mir6372 miRNA Interval_158587 chr8 84646960 84647905 + 0 NA Intergenic Intergenic 15422 ENSMUSG00000053560.5 ENSMUSG00000053560 ENSMUST00000060427 Ier2 protein_coding Interval_83752 chr19 4396508 4398625 + 0 NA promoter-TSS (ENSMUSG00000054611.17) protein_coding-promoter-TSS (ENSMUSG00000054611.17) -41757 ENSMUSG00000087132.8 ENSMUSG00000087132 ENSMUST00000136632 A930001C03Rik processed_transcript Interval_172720 chrX 47912248 47913231 + 0 NA intron (ENSMUSG00000001173.15, intron 1 of 1) protein_coding-intron (ENSMUSG00000001173.15, intron 1 of 23) 12394 ENSMUSG00000068014.5 ENSMUSG00000068014 ENSMUST00000119328 Gm14648 processed_pseudogene Interval_51607 chr14 30671813 30672555 + 0 NA intron (ENSMUSG00000052395.17, intron 6 of 12) protein_coding-intron (ENSMUSG00000052395.17, intron 6 of 12) 17777 ENSMUSG00000052395.17 ENSMUSG00000052395 ENSMUST00000226805 Rft1 protein_coding Interval_17949 chr10 81025068 81025575 + 0 NA promoter-TSS (ENSMUSG00000043670.4) protein_coding-promoter-TSS (ENSMUSG00000043670.4) 238 ENSMUSG00000087114.1 ENSMUSG00000087114 ENSMUST00000151873 Gm16099 antisense Interval_148277 chr7 80238049 80239271 + 0 NA promoter-TSS (ENSMUSG00000082954.1) processed_pseudogene-promoter-TSS (ENSMUSG00000082954.1) -716 ENSMUSG00000082954.1 ENSMUSG00000082954 ENSMUST00000119674 Gm15504 processed_pseudogene Interval_82283 chr18 70052764 70053848 + 0 NA exon (ENSMUSG00000024511.15, exon 1 of 6) protein_coding-exon (ENSMUSG00000024511.15, exon 1 of 6) -16917 ENSMUSG00000117678.1 ENSMUSG00000117678 ENSMUST00000237601 Gm50219 processed_pseudogene Interval_97515 chr2 138326153 138326962 + 0 NA intron (ENSMUSG00000062098.11, intron 1 of 3) protein_coding-intron (ENSMUSG00000062098.11, intron 1 of 5) 69895 ENSMUSG00000062098.11 ENSMUSG00000062098 ENSMUST00000075410 Btbd3 protein_coding Interval_118563 chr4 132523666 132525487 + 0 NA Intergenic Intergenic -8111 ENSMUSG00000087352.1 ENSMUSG00000087352 ENSMUST00000124471 Gm12999 antisense Interval_73032 chr17 34257500 34257740 + 0 NA promoter-TSS (ENSMUSG00000073421.6) protein_coding-promoter-TSS (ENSMUSG00000073421.6) -5630 ENSMUSG00000073421.6 ENSMUSG00000073421 ENSMUST00000174875 H2-Ab1 protein_coding Interval_14458 chr10 34018921 34020074 + 0 NA promoter-TSS (ENSMUSG00000019782.10) protein_coding-promoter-TSS (ENSMUSG00000019782.10) 89 ENSMUSG00000019782.10 ENSMUSG00000019782 ENSMUST00000219414 Rwdd1 protein_coding Interval_76962 chr17 85189347 85190479 + 0 NA intron (ENSMUSG00000071037.6, intron 3 of 10) protein_coding-intron (ENSMUSG00000071037.6, intron 3 of 10) 99307 ENSMUSG00000071037.6 ENSMUSG00000071037 ENSMUST00000234501 Camkmt protein_coding Interval_152947 chr7 139972565 139973172 + 0 NA intron (ENSMUSG00000073795.11, intron 5 of 5) protein_coding-intron (ENSMUSG00000073795.11, intron 6 of 6) 5851 ENSMUSG00000073795.11 ENSMUSG00000073795 ENSMUST00000121412 Spef1l protein_coding Interval_93930 chr2 79519493 79520297 + 0 NA Intergenic Intergenic -63144 ENSMUSG00000034701.9 ENSMUSG00000034701 ENSMUST00000041099 Neurod1 protein_coding Interval_38199 chr12 76336031 76337323 + 0 NA Intergenic Intergenic 8704 ENSMUSG00000112096.1 ENSMUSG00000112096 ENSMUST00000220077 A430103D13Rik TEC Interval_27240 chr11 64638379 64638619 + 0 NA Intergenic Intergenic -47859 ENSMUSG00000080430.1 ENSMUSG00000080430 ENSMUST00000116780 Gm24275 miRNA Interval_95092 chr2 103810061 103811464 + 0 NA promoter-TSS (ENSMUSG00000086687.1) processed_transcript-promoter-TSS (ENSMUSG00000086687.1) -140 ENSMUSG00000086687.1 ENSMUSG00000086687 ENSMUST00000143559 4930547E08Rik processed_transcript Interval_150566 chr7 112478934 112479716 + 0 NA intron (ENSMUSG00000030770.15, intron 2 of 13) protein_coding-intron (ENSMUSG00000030770.15, intron 1 of 12) 51420 ENSMUSG00000030770.15 ENSMUSG00000030770 ENSMUST00000126047 Parva protein_coding Interval_141481 chr6 128529815 128530056 + 0 NA promoter-TSS (ENSMUSG00000107764.1) processed_pseudogene-promoter-TSS (ENSMUSG00000107764.1) -210 ENSMUSG00000107764.1 ENSMUSG00000107764 ENSMUST00000205249 Gm5318 processed_pseudogene Interval_24080 chr11 30060525 30060890 + 0 NA Intergenic Intergenic -45687 ENSMUSG00000101872.1 ENSMUSG00000101872 ENSMUST00000186216 Gm29237 antisense Interval_87991 chr19 57627087 57628139 + 0 NA intron (ENSMUSG00000054843.9, intron 1 of 28) protein_coding-intron (ENSMUSG00000054843.9, intron 1 of 28) 16579 ENSMUSG00000054843.9 ENSMUSG00000054843 ENSMUST00000077282 Atrnl1 protein_coding Interval_121365 chr4 155283059 155283876 + 0 NA intron (ENSMUSG00000029053.16, intron 7 of 14) protein_coding-intron (ENSMUSG00000029053.16, intron 10 of 17) 33501 ENSMUSG00000073684.13 ENSMUSG00000073684 ENSMUST00000156404 Faap20 protein_coding Interval_70471 chr17 10441163 10442653 + 0 NA intron (ENSMUSG00000037196.6, intron 4 of 4) protein_coding-intron (ENSMUSG00000037196.6, intron 4 of 4) -14308 ENSMUSG00000089633.2 ENSMUSG00000089633 ENSMUST00000160738 A230009B12Rik antisense Interval_33040 chr11 113812714 113812960 + 0 NA intron (ENSMUSG00000041592.16, intron 4 of 5) protein_coding-intron (ENSMUSG00000041592.16, intron 36 of 44) -2414 ENSMUSG00000041592.16 ENSMUSG00000041592 ENSMUST00000144301 Sdk2 protein_coding Interval_86468 chr19 40813356 40813665 + 0 NA intron (ENSMUSG00000108929.2, intron 29 of 33) protein_coding-intron (ENSMUSG00000108929.2, intron 23 of 25) -17798 ENSMUSG00000025010.14 ENSMUSG00000025010 ENSMUST00000119316 Ccnj protein_coding Interval_77486 chr17 90013773 90014208 + 0 NA Intergenic Intergenic -37205 ENSMUSG00000117635.1 ENSMUSG00000117635 ENSMUST00000234603 Gm41653 lincRNA Interval_107291 chr3 105487076 105487616 + 0 NA intron (ENSMUSG00000040896.16, intron 2 of 4) protein_coding-intron (ENSMUSG00000040896.16, intron 1 of 6) -15561 ENSMUSG00000105753.1 ENSMUSG00000105753 ENSMUST00000200070 Gm43847 sense_intronic Interval_1383 chr1 21213496 21213808 + 0 NA Intergenic Intergenic -4923 ENSMUSG00000025933.15 ENSMUSG00000025933 ENSMUST00000027064 Tmem14a protein_coding Interval_70137 chr17 5713043 5713954 + 0 NA intron (ENSMUSG00000034265.8, intron 4 of 8) protein_coding-intron (ENSMUSG00000034265.8, intron 4 of 8) -85993 ENSMUSG00000096965.7 ENSMUSG00000096965 ENSMUST00000181392 3300005D01Rik lincRNA Interval_85442 chr19 26465210 26465414 + 0 NA intron (ENSMUSG00000117707.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000117707.1, intron 1 of 2) 2467 ENSMUSG00000117707.1 ENSMUSG00000117707 ENSMUST00000237890 Gm50378 lincRNA Interval_170040 chr9 103996308 103996966 + 0 NA Intergenic Intergenic 5702 ENSMUSG00000111035.1 ENSMUSG00000111035 ENSMUST00000216588 Gm33054 lincRNA Interval_149301 chr7 97244724 97245165 + 0 NA intron (ENSMUSG00000004508.6, intron 2 of 9) protein_coding-intron (ENSMUSG00000004508.6, intron 2 of 9) 71050 ENSMUSG00000035713.15 ENSMUSG00000035713 ENSMUST00000181354 Usp35 protein_coding Interval_29799 chr11 86906217 86907166 + 0 NA Intergenic Intergenic 65333 ENSMUSG00000018427.8 ENSMUSG00000018427 ENSMUST00000238921 Ypel2 protein_coding Interval_113208 chr4 49921152 49922127 + 0 NA Intergenic Intergenic 129764 ENSMUSG00000081120.1 ENSMUSG00000081120 ENSMUST00000119387 Gm12458 processed_pseudogene Interval_9258 chr1 155568313 155568734 + 0 NA intron (ENSMUSG00000033701.13, intron 3 of 7) protein_coding-intron (ENSMUSG00000033701.13, intron 3 of 7) 5406 ENSMUSG00000033701.13 ENSMUSG00000033701 ENSMUST00000192730 Acbd6 protein_coding Interval_139629 chr6 103816297 103816727 + 0 NA Intergenic Intergenic 16066 ENSMUSG00000089091.1 ENSMUSG00000089091 ENSMUST00000158466 Gm25656 snRNA Interval_100432 chr2 168979671 168981711 + 0 NA Intergenic Intergenic 2423 ENSMUSG00000086348.1 ENSMUSG00000086348 ENSMUST00000140241 1700017J07Rik lincRNA Interval_96682 chr2 127111620 127112345 + 0 NA intron (ENSMUSG00000034906.15, intron 12 of 16) protein_coding-intron (ENSMUSG00000034906.15, intron 13 of 17) 10068 ENSMUSG00000034906.15 ENSMUSG00000034906 ENSMUST00000156625 Ncaph protein_coding Interval_35082 chr12 17175468 17177091 + 0 NA exon (ENSMUSG00000051726.6, exon 1 of 1) protein_coding-exon (ENSMUSG00000051726.6, exon 1 of 1) 609 ENSMUSG00000051726.6 ENSMUSG00000051726 ENSMUST00000170580 Kcnf1 protein_coding Interval_111626 chr4 24811162 24811625 + 0 NA intron (ENSMUSG00000040387.16, intron 1 of 8) protein_coding-intron (ENSMUSG00000040387.16, intron 1 of 9) 18713 ENSMUSG00000087399.1 ENSMUSG00000087399 ENSMUST00000142373 Gm11899 antisense Interval_71431 chr17 23705296 23706653 + 0 NA exon (ENSMUSG00000043747.12, exon 37 of 41) protein_coding-exon (ENSMUSG00000043747.12, exon 37 of 41) -5861 ENSMUSG00000118572.1 ENSMUSG00000118572 ENSMUST00000239094 AC122821.1 processed_pseudogene Interval_29967 chr11 88419203 88421072 + 0 NA intron (ENSMUSG00000069769.13, intron 2 of 5) protein_coding-intron (ENSMUSG00000069769.13, intron 7 of 13) 13377 ENSMUSG00000084411.2 ENSMUSG00000084411 ENSMUST00000120278 Gm11510 processed_pseudogene Interval_145805 chr7 39455367 39456299 + 0 NA intron (ENSMUSG00000030424.15, intron 1 of 5) transcribed_unprocessed_pseudogene-intron (ENSMUSG00000030424.15, intron 1 of 5) 6315 ENSMUSG00000030424.15 ENSMUSG00000030424 ENSMUST00000061201 Zfp939 transcribed_unprocessed_pseudogene Interval_42981 chr13 22040608 22044365 + 0 NA promoter-TSS (ENSMUSG00000069300.3) protein_coding-promoter-TSS (ENSMUSG00000069300.3) -59 ENSMUSG00000105433.1 ENSMUSG00000105433 ENSMUST00000198508 Gm44486 miRNA Interval_144136 chr7 19589383 19590517 + 0 NA intron (ENSMUSG00000061028.7, intron 7 of 19) protein_coding-intron (ENSMUSG00000061028.7, intron 8 of 20) -4092 ENSMUSG00000061028.7 ENSMUSG00000061028 ENSMUST00000207325 Clasrp protein_coding Interval_131486 chr5 137513188 137513479 + 0 NA intron (ENSMUSG00000106237.1, intron 1 of 1) protein_coding-intron (ENSMUSG00000029711.13, intron 1 of 5) 3080 ENSMUSG00000106237.1 ENSMUSG00000106237 ENSMUST00000197762 Gm8066 lincRNA Interval_84225 chr19 8870945 8872932 + 0 NA intron (ENSMUSG00000071655.12, intron 2 of 8) protein_coding-intron (ENSMUSG00000071655.12, intron 1 of 7) 345 ENSMUSG00000071655.12 ENSMUSG00000071655 ENSMUST00000096255 Ubxn1 protein_coding Interval_56873 chr14 122654888 122655339 + 0 NA intron (ENSMUSG00000041650.15, intron 5 of 8) protein_coding-intron (ENSMUSG00000041650.15, intron 9 of 23) -31203 ENSMUSG00000115264.1 ENSMUSG00000115264 ENSMUST00000226674 Gm49260 TEC Interval_116556 chr4 115583648 115584284 + 0 NA promoter-TSS (ENSMUSG00000083457.1) unprocessed_pseudogene-promoter-TSS (ENSMUSG00000083457.1) -822 ENSMUSG00000083457.1 ENSMUSG00000083457 ENSMUST00000119563 Cyp4b1-ps2 unprocessed_pseudogene Interval_91656 chr2 45893256 45893608 + 0 NA Intergenic Intergenic 83960 ENSMUSG00000083807.1 ENSMUSG00000083807 ENSMUST00000121515 Gm13466 processed_pseudogene Interval_120225 chr4 144518528 144518706 + 0 NA Intergenic Intergenic -1205 ENSMUSG00000028593.5 ENSMUSG00000028593 ENSMUST00000030328 Aadacl4fm1 protein_coding Interval_123305 chr5 31272255 31272444 + 0 NA intron (ENSMUSG00000038564.11, intron 16 of 47) protein_coding-intron (ENSMUSG00000038564.11, intron 16 of 47) 9091 ENSMUSG00000038564.11 ENSMUSG00000038564 ENSMUST00000201809 Ift172 protein_coding Interval_73952 chr17 45644040 45644800 + 0 NA intron (ENSMUSG00000058626.16, intron 3 of 21) protein_coding-intron (ENSMUSG00000058626.16, intron 3 of 21) 14877 ENSMUSG00000058626.16 ENSMUSG00000058626 ENSMUST00000151350 Capn11 protein_coding Interval_114309 chr4 72167751 72168752 + 0 NA promoter-TSS (ENSMUSG00000086027.1) antisense-promoter-TSS (ENSMUSG00000086027.1) -517 ENSMUSG00000086027.1 ENSMUSG00000086027 ENSMUST00000142137 Gm11250 antisense Interval_124467 chr5 48423556 48423802 + 0 NA intron (ENSMUSG00000029088.16, intron 2 of 7) protein_coding-intron (ENSMUSG00000029088.16, intron 3 of 8) 51246 ENSMUSG00000029089.8 ENSMUSG00000029089 ENSMUST00000199818 5730480H06Rik protein_coding Interval_48398 chr13 98771165 98771358 + 0 NA intron (ENSMUSG00000041685.16, intron 8 of 8) protein_coding-intron (ENSMUSG00000041685.16, intron 8 of 25) -21941 ENSMUSG00000041685.16 ENSMUSG00000041685 ENSMUST00000224416 Fcho2 protein_coding Interval_143713 chr7 15880933 15882962 + 0 NA promoter-TSS (ENSMUSG00000074365.13) protein_coding-promoter-TSS (ENSMUSG00000074365.13) -2075 ENSMUSG00000041578.15 ENSMUSG00000041578 ENSMUST00000132563 Crx protein_coding Interval_2456 chr1 39497485 39498159 + 0 NA Intergenic Intergenic -21711 ENSMUSG00000104827.1 ENSMUSG00000104827 ENSMUST00000197298 Gm24826 snoRNA Interval_70251 chr17 7240367 7241699 + 0 NA intron (ENSMUSG00000023809.10, intron 2 of 7) protein_coding-intron (ENSMUSG00000023809.10, intron 3 of 20) 70906 ENSMUSG00000023809.10 ENSMUSG00000023809 ENSMUST00000231530 Rps6ka2 protein_coding Interval_10326 chr1 169329937 169330138 + 0 NA intron (ENSMUSG00000103530.1, intron 2 of 2) lincRNA-intron (ENSMUSG00000103530.1, intron 2 of 2) 17595 ENSMUSG00000103530.1 ENSMUSG00000103530 ENSMUST00000192576 Gm37839 lincRNA Interval_6041 chr1 94546617 94546841 + 0 NA Intergenic Intergenic 68975 ENSMUSG00000077413.1 ENSMUSG00000077413 ENSMUST00000104225 Gm23389 snoRNA Interval_43533 chr13 32841916 32842163 + 0 NA TTS (ENSMUSG00000044734.16) protein_coding-TTS (ENSMUSG00000044734.16) 3751 ENSMUSG00000044734.16 ENSMUSG00000044734 ENSMUST00000221967 Serpinb1a protein_coding Interval_80079 chr18 37341707 37344253 + 0 NA exon (ENSMUSG00000045062.4, exon 1 of 1) protein_coding-exon (ENSMUSG00000045062.4, exon 1 of 1) 1278 ENSMUSG00000045062.4 ENSMUSG00000045062 ENSMUST00000053037 Pcdhb7 protein_coding Interval_66109 chr16 31657181 31658068 + 0 NA Intergenic Intergenic -21617 ENSMUSG00000116781.1 ENSMUSG00000116781 ENSMUST00000232316 Gm49712 TEC Interval_29947 chr11 87974667 87975156 + 0 NA Intergenic Intergenic 9101 ENSMUSG00000020483.14 ENSMUSG00000020483 ENSMUST00000146941 Dynll2 protein_coding Interval_43944 chr13 38220517 38220753 + 0 NA promoter-TSS (ENSMUSG00000021431.15) protein_coding-promoter-TSS (ENSMUSG00000021431.15) 4699 ENSMUSG00000021431.15 ENSMUSG00000021431 ENSMUST00000223893 Snrnp48 protein_coding Interval_108466 chr3 127457690 127460569 + 0 NA intron (ENSMUSG00000032826.19, intron 1 of 1) protein_coding-intron (ENSMUSG00000032826.19, intron 1 of 1) -21991 ENSMUSG00000105116.1 ENSMUSG00000105116 ENSMUST00000196760 Gm44494 miRNA Interval_103807 chr3 53115319 53115525 + 0 NA intron (ENSMUSG00000048332.13, intron 2 of 3) protein_coding-intron (ENSMUSG00000048332.13, intron 2 of 3) -2011 ENSMUSG00000104968.1 ENSMUSG00000104968 ENSMUST00000196732 Gm43803 antisense Interval_75192 chr17 64534172 64534922 + 0 NA intron (ENSMUSG00000073377.9, intron 1 of 2) lincRNA-intron (ENSMUSG00000073377.9, intron 1 of 3) 21113 ENSMUSG00000073377.9 ENSMUSG00000073377 ENSMUST00000168379 AU016765 lincRNA Interval_161341 chr8 119849388 119849600 + 0 NA Intergenic Intergenic -12775 ENSMUSG00000031828.9 ENSMUSG00000031828 ENSMUST00000034287 Klhl36 protein_coding Interval_32417 chr11 107435297 107436321 + 0 NA TTS (ENSMUSG00000087113.1) processed_transcript-TTS (ENSMUSG00000087113.1) 7533 ENSMUSG00000087113.1 ENSMUSG00000087113 ENSMUST00000136927 Gm11714 processed_transcript Interval_96534 chr2 125449758 125450980 + 0 NA intron (ENSMUSG00000027204.13, intron 5 of 9) protein_coding-intron (ENSMUSG00000027204.13, intron 6 of 65) -54720 ENSMUSG00000053615.1 ENSMUSG00000053615 ENSMUST00000066157 Gm9913 antisense Interval_167332 chr9 67495461 67495662 + 0 NA intron (ENSMUSG00000052698.15, intron 1 of 57) protein_coding-intron (ENSMUSG00000052698.15, intron 1 of 57) 71058 ENSMUSG00000111412.1 ENSMUSG00000111412 ENSMUST00000216972 Gm47047 antisense Interval_118079 chr4 128828132 128828345 + 0 NA Intergenic Intergenic -17959 ENSMUSG00000085701.1 ENSMUSG00000085701 ENSMUST00000138291 Gm12968 lincRNA Interval_80408 chr18 41922885 41923112 + 0 NA intron (ENSMUSG00000056671.7, intron 4 of 6) protein_coding-intron (ENSMUSG00000056671.7, intron 4 of 5) -27685 ENSMUSG00000118266.1 ENSMUSG00000118266 ENSMUST00000235276 Gm18371 processed_pseudogene Interval_67590 chr16 51720132 51720322 + 0 NA Intergenic Intergenic 267060 ENSMUSG00000116725.1 ENSMUSG00000116725 ENSMUST00000232050 Gm29686 processed_transcript Interval_145563 chr7 35637900 35638123 + 0 NA intron (ENSMUSG00000034867.16, intron 26 of 26) protein_coding-intron (ENSMUSG00000034867.16, intron 28 of 28) 5033 ENSMUSG00000030417.15 ENSMUSG00000030417 ENSMUST00000130340 Pdcd5 protein_coding Interval_4182 chr1 71426783 71427284 + 0 NA Intergenic Intergenic 66781 ENSMUSG00000101617.1 ENSMUSG00000101617 ENSMUST00000186254 Gm6947 processed_pseudogene Interval_138570 chr6 89410006 89411085 + 0 NA intron (ENSMUSG00000030086.16, intron 5 of 6) protein_coding-intron (ENSMUSG00000030086.16, intron 6 of 7) 65405 ENSMUSG00000107570.1 ENSMUSG00000107570 ENSMUST00000204568 Gm44207 TEC Interval_14365 chr10 31557582 31558082 + 0 NA promoter-TSS (ENSMUSG00000112338.1) TEC-promoter-TSS (ENSMUSG00000112338.1) -392 ENSMUSG00000112338.1 ENSMUSG00000112338 ENSMUST00000219494 Gm47693 TEC Interval_47009 chr13 74316602 74317959 + 0 NA promoter-TSS (ENSMUSG00000021576.6) protein_coding-promoter-TSS (ENSMUSG00000021576.6) -64 ENSMUSG00000021576.6 ENSMUSG00000021576 ENSMUST00000223386 Pdcd6 protein_coding Interval_153673 chr8 4446864 4447201 + 0 NA Intergenic Intergenic -18557 ENSMUSG00000108860.1 ENSMUSG00000108860 ENSMUST00000207275 Gm6070 processed_pseudogene Interval_16740 chr10 67851183 67851385 + 0 NA Intergenic Intergenic -58082 ENSMUSG00000111956.1 ENSMUSG00000111956 ENSMUST00000219270 Gm29774 processed_pseudogene Interval_78443 chr18 12882853 12883470 + 0 NA intron (ENSMUSG00000044252.18, intron 13 of 14) protein_coding-intron (ENSMUSG00000044252.18, intron 13 of 27) -15266 ENSMUSG00000080866.1 ENSMUSG00000080866 ENSMUST00000118252 Gm5687 processed_pseudogene Interval_85996 chr19 34825980 34826701 + 0 NA intron (ENSMUSG00000033610.16, intron 2 of 5) protein_coding-intron (ENSMUSG00000033610.16, intron 3 of 6) -5567 ENSMUSG00000065594.1 ENSMUSG00000065594 ENSMUST00000083660 Mir107 miRNA Interval_85634 chr19 29212619 29213148 + 0 NA Intergenic Intergenic -39558 ENSMUSG00000024789.13 ENSMUSG00000024789 ENSMUST00000238009 Jak2 protein_coding Interval_64225 chr16 9307961 9308192 + 0 NA Intergenic Intergenic 149306 ENSMUSG00000116123.1 ENSMUSG00000116123 ENSMUST00000229655 Gm49451 lincRNA Interval_33919 chr11 119402526 119403090 + 0 NA intron (ENSMUSG00000070327.14, intron 2 of 66) protein_coding-intron (ENSMUSG00000070327.14, intron 2 of 66) 12336 ENSMUSG00000088015.1 ENSMUSG00000088015 ENSMUST00000157390 Mir1932 miRNA Interval_71831 chr17 26394871 26395335 + 0 NA Intergenic Intergenic -19726 ENSMUSG00000034413.14 ENSMUSG00000034413 ENSMUST00000053020 Neurl1b protein_coding Interval_124495 chr5 49096661 49097815 + 0 NA intron (ENSMUSG00000029088.16, intron 1 of 8) protein_coding-intron (ENSMUSG00000029088.16, intron 1 of 8) -10468 ENSMUSG00000104661.1 ENSMUSG00000104661 ENSMUST00000197734 Gm42768 TEC Interval_84218 chr19 8840467 8840839 + 0 NA TTS (ENSMUSG00000071657.12) protein_coding-TTS (ENSMUSG00000071657.12) -1459 ENSMUSG00000071658.5 ENSMUSG00000071658 ENSMUST00000096259 Gng3 protein_coding Interval_165092 chr9 44513652 44513883 + 0 NA TTS (ENSMUSG00000047880.15) protein_coding-TTS (ENSMUSG00000047880.15) 12815 ENSMUSG00000047880.15 ENSMUSG00000047880 ENSMUST00000213357 Cxcr5 protein_coding Interval_144194 chr7 19891440 19891682 + 0 NA Intergenic Intergenic -3596 ENSMUSG00000049848.7 ENSMUSG00000049848 ENSMUST00000052605 Ceacam19 protein_coding Interval_167423 chr9 69014851 69015050 + 0 NA intron (ENSMUSG00000032238.17, intron 1 of 5) protein_coding-intron (ENSMUSG00000032238.17, intron 1 of 10) 349297 ENSMUSG00000086648.1 ENSMUSG00000086648 ENSMUST00000152570 Gm15511 antisense Interval_146357 chr7 45491062 45491535 + 0 NA exon (ENSMUSG00000030824.17, exon 13 of 13) protein_coding-exon (ENSMUSG00000030824.17, exon 13 of 13) -3896 ENSMUSG00000011382.8 ENSMUSG00000011382 ENSMUST00000210440 Dhdh protein_coding Interval_45473 chr13 55324484 55324801 + 0 NA TTS (ENSMUSG00000021485.14) protein_coding-TTS (ENSMUSG00000021485.14) 2623 ENSMUSG00000021486.7 ENSMUSG00000021486 ENSMUST00000224220 Prelid1 protein_coding Interval_76931 chr17 85018334 85019077 + 0 NA intron (ENSMUSG00000061130.13, intron 5 of 6) protein_coding-intron (ENSMUSG00000061130.13, intron 5 of 5) -9671 ENSMUSG00000024131.8 ENSMUSG00000024131 ENSMUST00000024944 Slc3a1 protein_coding Interval_125678 chr5 73202875 73203091 + 0 NA intron (ENSMUSG00000070733.13, intron 2 of 11) protein_coding-intron (ENSMUSG00000070733.13, intron 2 of 62) 9660 ENSMUSG00000090561.2 ENSMUSG00000090561 ENSMUST00000168686 Gm17207 sense_intronic Interval_136490 chr6 54906209 54907295 + 0 NA Intergenic Intergenic 4330 ENSMUSG00000107841.1 ENSMUSG00000107841 ENSMUST00000204539 Gm44185 TEC Interval_10209 chr1 167217427 167217650 + 0 NA Intergenic Intergenic 19297 ENSMUSG00000026558.13 ENSMUSG00000026558 ENSMUST00000193579 Uck2 protein_coding Interval_139228 chr6 97339213 97340797 + 0 NA intron (ENSMUSG00000030064.16, intron 4 of 7) protein_coding-intron (ENSMUSG00000030064.16, intron 7 of 22) -48744 ENSMUSG00000030064.16 ENSMUSG00000030064 ENSMUST00000124050 Frmd4b protein_coding Interval_24383 chr11 32834532 32835761 + 0 NA Intergenic Intergenic -10584 ENSMUSG00000020270.9 ENSMUSG00000020270 ENSMUST00000020508 Smim23 protein_coding Interval_161250 chr8 119227865 119228549 + 0 NA intron (ENSMUSG00000031841.19, intron 2 of 3) protein_coding-intron (ENSMUSG00000031841.19, intron 8 of 13) 76742 ENSMUSG00000031841.19 ENSMUSG00000031841 ENSMUST00000151842 Cdh13 protein_coding Interval_143834 chr7 16627770 16628556 + 0 NA intron (ENSMUSG00000100583.6, intron 2 of 2) antisense-intron (ENSMUSG00000100583.6, intron 2 of 2) -3486 ENSMUSG00000064745.1 ENSMUSG00000064745 ENSMUST00000082811 Gm24708 snRNA Interval_169797 chr9 101511995 101512381 + 0 NA Intergenic Intergenic -62835 ENSMUSG00000061486.7 ENSMUSG00000061486 ENSMUST00000075243 Gm5161 processed_pseudogene Interval_3053 chr1 52719075 52719350 + 0 NA intron (ENSMUSG00000041439.15, intron 1 of 6) protein_coding-intron (ENSMUSG00000041439.15, intron 1 of 5) -14450 ENSMUSG00000100302.1 ENSMUSG00000100302 ENSMUST00000190228 Gm29670 sense_intronic Interval_3702 chr1 61318512 61318979 + 0 NA Intergenic Intergenic 16836 ENSMUSG00000085248.2 ENSMUSG00000085248 ENSMUST00000128274 Gm11587 lincRNA Interval_171006 chr9 113664089 113664288 + 0 NA intron (ENSMUSG00000032504.15, intron 12 of 17) protein_coding-intron (ENSMUSG00000032504.15, intron 12 of 17) -22134 ENSMUSG00000111364.1 ENSMUSG00000111364 ENSMUST00000213455 Gm36745 lincRNA Interval_53918 chr14 63381667 63382564 + 0 NA intron (ENSMUSG00000014453.4, intron 6 of 12) protein_coding-intron (ENSMUSG00000014453.4, intron 6 of 12) -5697 ENSMUSG00000014453.4 ENSMUSG00000014453 ENSMUST00000224965 Blk protein_coding Interval_61525 chr15 82170081 82171471 + 0 NA TTS (ENSMUSG00000022463.8) protein_coding-TTS (ENSMUSG00000022463.8) -14740 ENSMUSG00000116226.1 ENSMUSG00000116226 ENSMUST00000229390 Gm49502 TEC Interval_8666 chr1 146569249 146569835 + 0 NA intron (ENSMUSG00000035131.14, intron 3 of 8) protein_coding-intron (ENSMUSG00000035131.14, intron 2 of 7) 71855 ENSMUSG00000035131.14 ENSMUSG00000035131 ENSMUST00000125331 Brinp3 protein_coding Interval_108304 chr3 123508005 123509285 + 0 NA promoter-TSS (ENSMUSG00000092730.1) snoRNA-promoter-TSS (ENSMUSG00000092730.1) -312 ENSMUSG00000104960.1 ENSMUSG00000104960 ENSMUST00000199645 Snhg8 processed_transcript Interval_80858 chr18 49523133 49523569 + 0 NA promoter-TSS (ENSMUSG00000100297.1) lincRNA-promoter-TSS (ENSMUSG00000100297.1) 62 ENSMUSG00000100297.1 ENSMUSG00000100297 ENSMUST00000190201 1700044K03Rik lincRNA Interval_5282 chr1 87225812 87227249 + 0 NA TTS (ENSMUSG00000026254.17) protein_coding-TTS (ENSMUSG00000026254.17) 12551 ENSMUSG00000026254.17 ENSMUSG00000026254 ENSMUST00000113231 Eif4e2 protein_coding Interval_108430 chr3 127105000 127105295 + 0 NA intron (ENSMUSG00000032826.19, intron 1 of 31) protein_coding-intron (ENSMUSG00000032826.19, intron 3 of 14) 35343 ENSMUSG00000104963.1 ENSMUSG00000104963 ENSMUST00000199556 Gm42974 TEC Interval_145655 chr7 36796372 36796976 + 0 NA Intergenic Intergenic -45201 ENSMUSG00000089273.1 ENSMUSG00000089273 ENSMUST00000158648 Gm24550 misc_RNA Interval_147398 chr7 66450173 66450615 + 0 NA Intergenic Intergenic 8508 ENSMUSG00000109114.1 ENSMUSG00000109114 ENSMUST00000208297 Gm44753 lincRNA Interval_125926 chr5 75853207 75854083 + 0 NA promoter-TSS (ENSMUSG00000100936.1) lincRNA-promoter-TSS (ENSMUSG00000100936.1) -687 ENSMUSG00000100936.1 ENSMUSG00000100936 ENSMUST00000187685 Gm28865 lincRNA Interval_104113 chr3 58690694 58692848 + 0 NA promoter-TSS (ENSMUSG00000097725.4) lincRNA-promoter-TSS (ENSMUSG00000097725.4) -818 ENSMUSG00000097725.4 ENSMUSG00000097725 ENSMUST00000181694 4930593A02Rik lincRNA Interval_21558 chr10 129902078 129902369 + 0 NA exon (ENSMUSG00000061961.3, exon 1 of 1) protein_coding-exon (ENSMUSG00000061961.3, exon 1 of 1) 3644 ENSMUSG00000061961.3 ENSMUSG00000061961 ENSMUST00000071557 Olfr815 protein_coding Interval_88139 chr19 59511294 59511972 + 0 NA intron (ENSMUSG00000100119.1, intron 2 of 4) lincRNA-intron (ENSMUSG00000100119.1, intron 2 of 4) 18497 ENSMUSG00000100119.1 ENSMUSG00000100119 ENSMUST00000190204 2700089I24Rik lincRNA Interval_153925 chr8 11227132 11227889 + 0 NA intron (ENSMUSG00000031502.11, intron 24 of 52) protein_coding-intron (ENSMUSG00000031502.11, intron 24 of 51) 39755 ENSMUSG00000085573.1 ENSMUSG00000085573 ENSMUST00000151014 Gm15418 antisense Interval_27139 chr11 63244563 63245226 + 0 NA Intergenic Intergenic -3419 ENSMUSG00000083052.1 ENSMUSG00000083052 ENSMUST00000117347 Gm12285 processed_pseudogene Interval_45890 chr13 58840825 58841203 + 0 NA intron (ENSMUSG00000055254.15, intron 3 of 11) protein_coding-intron (ENSMUSG00000055254.15, intron 4 of 17) 5199 ENSMUSG00000055254.15 ENSMUSG00000055254 ENSMUST00000223636 Ntrk2 protein_coding Interval_37487 chr12 69309698 69309920 + 0 NA TTS (ENSMUSG00000020982.9) protein_coding-TTS (ENSMUSG00000020982.9) 7408 ENSMUSG00000020978.10 ENSMUSG00000020978 ENSMUST00000154667 Klhdc2 protein_coding Interval_29514 chr11 84582614 84582839 + 0 NA Intergenic Intergenic 57066 ENSMUSG00000087211.7 ENSMUSG00000087211 ENSMUST00000128121 Lhx1os lincRNA Interval_27980 chr11 71847567 71848371 + 0 NA TTS (ENSMUSG00000077456.1) snoRNA-TTS (ENSMUSG00000077456.1) 237 ENSMUSG00000077456.1 ENSMUSG00000077456 ENSMUST00000104268 Gm22927 snoRNA Interval_5390 chr1 88447659 88447967 + 0 NA intron (ENSMUSG00000099553.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000099553.1, intron 1 of 2) -11870 ENSMUSG00000100908.1 ENSMUSG00000100908 ENSMUST00000186556 Gm28888 lincRNA Interval_115756 chr4 103382146 103382427 + 0 NA promoter-TSS (ENSMUSG00000086136.1) lincRNA-promoter-TSS (ENSMUSG00000086136.1) -214 ENSMUSG00000086136.1 ENSMUSG00000086136 ENSMUST00000150345 Gm12718 lincRNA Interval_9784 chr1 162213364 162214256 + 0 NA intron (ENSMUSG00000040265.16, intron 3 of 8) protein_coding-intron (ENSMUSG00000040265.16, intron 14 of 19) -4004 ENSMUSG00000070126.1 ENSMUSG00000070126 ENSMUST00000093618 Mir199a-2 miRNA Interval_9727 chr1 161313913 161315025 + 0 NA Intergenic Intergenic -15455 ENSMUSG00000104163.1 ENSMUSG00000104163 ENSMUST00000194329 Gm19057 processed_pseudogene Interval_107729 chr3 112132632 112132952 + 0 NA Intergenic Intergenic 66249 ENSMUSG00000089017.1 ENSMUSG00000089017 ENSMUST00000158392 Gm25519 snoRNA Interval_147535 chr7 68157076 68157532 + 0 NA intron (ENSMUSG00000005533.10, intron 1 of 6) protein_coding-intron (ENSMUSG00000005533.10, intron 2 of 20) -54534 ENSMUSG00000005533.10 ENSMUSG00000005533 ENSMUST00000208871 Igf1r protein_coding Interval_145559 chr7 35622481 35623111 + 0 NA intron (ENSMUSG00000034867.16, intron 21 of 26) protein_coding-intron (ENSMUSG00000034867.16, intron 21 of 28) 3317 ENSMUSG00000034867.16 ENSMUSG00000034867 ENSMUST00000206632 Ankrd27 protein_coding Interval_88362 chr2 4452496 4452960 + 0 NA intron (ENSMUSG00000026657.17, intron 3 of 24) protein_coding-intron (ENSMUSG00000026657.17, intron 2 of 23) 13942 ENSMUSG00000086874.1 ENSMUSG00000086874 ENSMUST00000139479 Gm13175 antisense Interval_70523 chr17 11529623 11530197 + 0 NA intron (ENSMUSG00000023826.16, intron 5 of 10) protein_coding-intron (ENSMUSG00000023826.16, intron 6 of 6) 15888 ENSMUSG00000099618.1 ENSMUSG00000099618 ENSMUST00000185957 Gm28118 processed_pseudogene Interval_149861 chr7 102048243 102048773 + 0 NA intron (ENSMUSG00000070426.12, intron 1 of 8) protein_coding-intron (ENSMUSG00000070426.12, intron 1 of 8) 16650 ENSMUSG00000070426.12 ENSMUSG00000070426 ENSMUST00000130074 Rnf121 protein_coding Interval_12888 chr10 7323088 7323904 + 0 NA Intergenic Intergenic 67287 ENSMUSG00000112057.1 ENSMUSG00000112057 ENSMUST00000220179 Gm21321 processed_pseudogene Interval_149854 chr7 102017256 102017564 + 0 NA exon (ENSMUSG00000070427.4, exon 1 of 4) protein_coding-exon (ENSMUSG00000070427.4, exon 1 of 4) 749 ENSMUSG00000070427.4 ENSMUSG00000070427 ENSMUST00000211502 Il18bp protein_coding Interval_87969 chr19 57452615 57453448 + 0 NA promoter-TSS (ENSMUSG00000025086.13) protein_coding-promoter-TSS (ENSMUSG00000025086.13) 74 ENSMUSG00000025086.13 ENSMUSG00000025086 ENSMUST00000238107 Trub1 protein_coding Interval_28144 chr11 73146127 73147607 + 0 NA intron (ENSMUSG00000005947.11, intron 30 of 30) protein_coding-intron (ENSMUSG00000005947.11, intron 30 of 30) -8573 ENSMUSG00000050107.2 ENSMUSG00000050107 ENSMUST00000052140 Haspin protein_coding Interval_128682 chr5 114689874 114691602 + 0 NA intron (ENSMUSG00000011884.13, intron 1 of 4) protein_coding-intron (ENSMUSG00000011884.13, intron 1 of 4) 203 ENSMUSG00000011884.13 ENSMUSG00000011884 ENSMUST00000112212 Gltp protein_coding Interval_83885 chr19 5355966 5357048 + 0 NA Intergenic Intergenic 4013 ENSMUSG00000118610.1 ENSMUSG00000118610 ENSMUST00000239201 AC122861.1 unprocessed_pseudogene Interval_133175 chr5 150343628 150344461 + 0 NA intron (ENSMUSG00000056602.12, intron 4 of 60) protein_coding-intron (ENSMUSG00000056602.12, intron 4 of 60) -44603 ENSMUSG00000106719.1 ENSMUSG00000106719 ENSMUST00000201397 Gm42556 antisense Interval_53092 chr14 54411764 54412955 + 0 NA promoter-TSS (ENSMUSG00000000958.10) protein_coding-promoter-TSS (ENSMUSG00000000958.10) -2157 ENSMUSG00000000958.10 ENSMUSG00000000958 ENSMUST00000195999 Slc7a7 protein_coding Interval_139593 chr6 101978756 101979871 + 0 NA Intergenic Intergenic 66040 ENSMUSG00000107421.1 ENSMUSG00000107421 ENSMUST00000204338 Gm44177 TEC Interval_18552 chr10 87501426 87502322 + 0 NA Intergenic Intergenic -5988 ENSMUSG00000112460.1 ENSMUSG00000112460 ENSMUST00000217737 Gm48120 processed_pseudogene Interval_19760 chr10 108541778 108542154 + 0 NA intron (ENSMUSG00000035864.14, intron 10 of 11) protein_coding-intron (ENSMUSG00000035864.14, intron 9 of 10) 59316 ENSMUSG00000112065.1 ENSMUSG00000112065 ENSMUST00000217917 Gm47466 processed_pseudogene Interval_12251 chr1 191135609 191135905 + 0 NA Intergenic Intergenic 3100 ENSMUSG00000102777.1 ENSMUSG00000102777 ENSMUST00000195344 Gm38161 lincRNA Interval_99440 chr2 161094891 161095250 + 0 NA intron (ENSMUSG00000057133.14, intron 1 of 16) protein_coding-intron (ENSMUSG00000057133.14, intron 1 of 36) -14341 ENSMUSG00000109780.1 ENSMUSG00000109780 ENSMUST00000209874 Gm45447 antisense Interval_126738 chr5 92416241 92416604 + 0 NA intron (ENSMUSG00000034826.14, intron 2 of 2) protein_coding-intron (ENSMUSG00000034826.14, intron 11 of 11) 8509 ENSMUSG00000034826.14 ENSMUSG00000034826 ENSMUST00000130156 Nup54 protein_coding Interval_43799 chr13 36582361 36582654 + 0 NA exon (ENSMUSG00000114746.1, exon 1 of 1) TEC-exon (ENSMUSG00000114746.1, exon 1 of 1) 1019 ENSMUSG00000114746.1 ENSMUSG00000114746 ENSMUST00000225768 4933436N17Rik TEC Interval_87723 chr19 55431432 55431902 + 0 NA intron (ENSMUSG00000024983.10, intron 3 of 3) protein_coding-intron (ENSMUSG00000024983.10, intron 5 of 7) 115340 ENSMUSG00000024983.10 ENSMUSG00000024983 ENSMUST00000224396 Vti1a protein_coding Interval_110894 chr4 9658777 9659398 + 0 NA intron (ENSMUSG00000028207.18, intron 1 of 4) protein_coding-intron (ENSMUSG00000028207.18, intron 1 of 4) -10192 ENSMUSG00000092724.1 ENSMUSG00000092724 ENSMUST00000174983 Gm25677 miRNA Interval_116838 chr4 117610284 117610691 + 0 NA intron (ENSMUSG00000033423.16, intron 5 of 7) protein_coding-intron (ENSMUSG00000033423.16, intron 6 of 8) 40353 ENSMUSG00000087807.1 ENSMUSG00000087807 ENSMUST00000157182 Gm25559 miRNA Interval_159444 chr8 94780952 94782470 + 0 NA exon (ENSMUSG00000031778.13, exon 3 of 3) protein_coding-exon (ENSMUSG00000031778.13, exon 3 of 3) 9507 ENSMUSG00000031778.13 ENSMUSG00000031778 ENSMUST00000150307 Cx3cl1 protein_coding Interval_149808 chr7 101695178 101695825 + 0 NA intron (ENSMUSG00000001829.17, intron 3 of 16) protein_coding-intron (ENSMUSG00000001829.17, intron 3 of 15) 31728 ENSMUSG00000001829.17 ENSMUSG00000001829 ENSMUST00000150832 Clpb protein_coding Interval_82814 chr18 77166776 77168641 + 0 NA Intergenic Intergenic 18655 ENSMUSG00000073532.3 ENSMUSG00000073532 ENSMUST00000097520 Gm7276 bidirectional_promoter_lncRNA Interval_116577 chr4 115838710 115840168 + 0 NA intron (ENSMUSG00000028708.16, intron 1 of 4) protein_coding-intron (ENSMUSG00000028708.16, intron 1 of 12) 206 ENSMUSG00000028708.16 ENSMUSG00000028708 ENSMUST00000135209 Mknk1 protein_coding Interval_131985 chr5 141852167 141852420 + 0 NA intron (ENSMUSG00000039683.16, intron 5 of 9) protein_coding-intron (ENSMUSG00000039683.16, intron 5 of 44) -236291 ENSMUSG00000085540.1 ENSMUSG00000085540 ENSMUST00000150385 Gm16036 antisense Interval_129517 chr5 120679778 120680805 + 0 NA TTS (ENSMUSG00000029602.11) protein_coding-TTS (ENSMUSG00000029602.11) 1788 ENSMUSG00000029603.15 ENSMUSG00000029603 ENSMUST00000124079 Dtx1 protein_coding Interval_68979 chr16 89902571 89902978 + 0 NA intron (ENSMUSG00000002489.16, intron 2 of 2) protein_coding-intron (ENSMUSG00000002489.16, intron 3 of 27) -107492 ENSMUSG00000002489.16 ENSMUSG00000002489 ENSMUST00000136760 Tiam1 protein_coding Interval_19812 chr10 109504650 109504876 + 0 NA Intergenic Intergenic -118276 ENSMUSG00000112253.1 ENSMUSG00000112253 ENSMUST00000219849 Gm47329 processed_pseudogene Interval_55263 chr14 79773437 79774279 + 0 NA Intergenic Intergenic -2546 ENSMUSG00000036422.10 ENSMUSG00000036422 ENSMUST00000194214 Pcdh8 protein_coding Interval_165220 chr9 45429920 45431942 + 0 NA intron (ENSMUSG00000097074.2, intron 2 of 2) protein_coding-intron (ENSMUSG00000032087.11, intron 1 of 32) 640 ENSMUSG00000032087.11 ENSMUSG00000032087 ENSMUST00000214151 Dscaml1 protein_coding Interval_73112 chr17 34889933 34890863 + 0 NA intron (ENSMUSG00000049823.9, intron 1 of 2) protein_coding-intron (ENSMUSG00000024371.14, intron 1 of 13) 5159 ENSMUSG00000024371.14 ENSMUSG00000024371 ENSMUST00000174279 C2 protein_coding Interval_58425 chr15 34434671 34435158 + 0 NA intron (ENSMUSG00000022324.15, intron 18 of 18) protein_coding-intron (ENSMUSG00000022324.15, intron 18 of 18) 6008 ENSMUSG00000065899.1 ENSMUSG00000065899 ENSMUST00000083965 Gm24523 snoRNA Interval_16752 chr10 67932336 67932797 + 0 NA Intergenic Intergenic -20131 ENSMUSG00000037855.15 ENSMUSG00000037855 ENSMUST00000138543 Zfp365 protein_coding Interval_34562 chr12 5152060 5152246 + 0 NA intron (ENSMUSG00000020627.10, intron 2 of 11) protein_coding-intron (ENSMUSG00000020627.10, intron 3 of 13) 83811 ENSMUSG00000112020.1 ENSMUSG00000112020 ENSMUST00000219031 Gm48532 TEC Interval_46287 chr13 63409137 63409321 + 0 NA intron (ENSMUSG00000021461.17, intron 1 of 1) protein_coding-intron (ENSMUSG00000021461.17, intron 1 of 15) 5538 ENSMUSG00000113126.1 ENSMUSG00000113126 ENSMUST00000220476 Gm47588 TEC Interval_160507 chr8 110122777 110125132 + 0 NA Intergenic Intergenic 15162 ENSMUSG00000095941.3 ENSMUSG00000095941 ENSMUST00000178785 Tle7 protein_coding Interval_121555 chr5 3417799 3418216 + 0 NA intron (ENSMUSG00000040274.11, intron 3 of 7) protein_coding-intron (ENSMUSG00000040274.11, intron 2 of 6) -52942 ENSMUSG00000040274.11 ENSMUSG00000040274 ENSMUST00000199396 Cdk6 protein_coding Interval_24546 chr11 34252549 34253744 + 0 NA intron (ENSMUSG00000020143.15, intron 41 of 51) protein_coding-intron (ENSMUSG00000020143.15, intron 41 of 51) -45057 ENSMUSG00000047861.2 ENSMUSG00000047861 ENSMUST00000060271 Foxi1 protein_coding Interval_120889 chr4 151337029 151337880 + 0 NA intron (ENSMUSG00000014592.21, intron 5 of 24) protein_coding-intron (ENSMUSG00000014592.21, intron 5 of 23) -39016 ENSMUSG00000085593.1 ENSMUSG00000085593 ENSMUST00000129097 4930589P08Rik antisense Interval_119603 chr4 138677677 138678155 + 0 NA Intergenic Intergenic 47305 ENSMUSG00000043621.13 ENSMUSG00000043621 ENSMUST00000135156 Ubxn10 protein_coding Interval_69553 chr16 94191308 94192027 + 0 NA intron (ENSMUSG00000040820.16, intron 2 of 6) protein_coding-intron (ENSMUSG00000040820.16, intron 5 of 9) 17126 ENSMUSG00000115246.1 ENSMUSG00000115246 ENSMUST00000228762 Gm48984 antisense Interval_3787 chr1 63090600 63091019 + 0 NA intron (ENSMUSG00000040865.15, intron 4 of 11) protein_coding-intron (ENSMUSG00000040865.15, intron 3 of 10) 17035 ENSMUSG00000081429.1 ENSMUSG00000081429 ENSMUST00000118179 Rps27-ps1 processed_pseudogene Interval_92083 chr2 53085407 53086471 + 0 NA intron (ENSMUSG00000036053.17, intron 9 of 26) protein_coding-intron (ENSMUSG00000036053.17, intron 9 of 26) 105248 ENSMUSG00000061136.16 ENSMUSG00000061136 ENSMUST00000132031 Prpf40a protein_coding Interval_6972 chr1 121468098 121468620 + 0 NA intron (ENSMUSG00000026339.18, intron 11 of 23) protein_coding-intron (ENSMUSG00000026339.18, intron 11 of 23) 24844 ENSMUSG00000085857.1 ENSMUSG00000085857 ENSMUST00000152863 Gm15392 antisense Interval_83162 chr18 82463439 82464636 + 0 NA Intergenic Intergenic 49672 ENSMUSG00000118256.1 ENSMUSG00000118256 ENSMUST00000237372 Gm50303 processed_pseudogene Interval_130595 chr5 129087830 129088216 + 0 NA Intergenic Intergenic -8734 ENSMUSG00000044017.16 ENSMUSG00000044017 ENSMUST00000156437 Adgrd1 protein_coding Interval_119757 chr4 139724193 139724692 + 0 NA Intergenic Intergenic 70893 ENSMUSG00000028738.14 ENSMUSG00000028738 ENSMUST00000166773 Tas1r2 protein_coding Interval_173739 chrX 103326438 103327083 + 0 NA intron (ENSMUSG00000031326.2, intron 1 of 2) protein_coding-intron (ENSMUSG00000031326.2, intron 1 of 2) 5362 ENSMUSG00000031326.2 ENSMUSG00000031326 ENSMUST00000033689 Cdx4 protein_coding Interval_140910 chr6 122712955 122713969 + 0 NA exon (ENSMUSG00000012396.12, exon 4 of 4) protein_coding-exon (ENSMUSG00000012396.12, exon 4 of 4) 5973 ENSMUSG00000012396.12 ENSMUSG00000012396 ENSMUST00000012540 Nanog protein_coding Interval_68673 chr16 84495436 84495664 + 0 NA Intergenic Intergenic 18638 ENSMUSG00000116991.1 ENSMUSG00000116991 ENSMUST00000231489 Gm6032 processed_pseudogene Interval_67265 chr16 45089713 45090427 + 0 NA Intergenic Intergenic -3520 ENSMUSG00000022665.15 ENSMUSG00000022665 ENSMUST00000061050 Ccdc80 protein_coding Interval_5571 chr1 89895548 89896025 + 0 NA TTS (ENSMUSG00000055013.16) protein_coding-TTS (ENSMUSG00000055013.16) 33399 ENSMUSG00000034486.8 ENSMUSG00000034486 ENSMUST00000187633 Gbx2 protein_coding Interval_93539 chr2 73918999 73919249 + 0 NA Intergenic Intergenic -7833 ENSMUSG00000018770.9 ENSMUSG00000018770 ENSMUST00000155474 Atp5g3 protein_coding Interval_172371 chrX 14571255 14572173 + 0 NA Intergenic Intergenic -225021 ENSMUSG00000084907.1 ENSMUSG00000084907 ENSMUST00000145383 Gm14505 lincRNA Interval_108835 chr3 132207433 132207916 + 0 NA Intergenic Intergenic 122382 ENSMUSG00000028031.6 ENSMUSG00000028031 ENSMUST00000029665 Dkk2 protein_coding Interval_111307 chr4 18343625 18344036 + 0 NA Intergenic Intergenic -63519 ENSMUSG00000087402.1 ENSMUSG00000087402 ENSMUST00000133363 Gm11867 processed_transcript Interval_109417 chr3 142092358 142092579 + 0 NA intron (ENSMUSG00000052430.15, intron 1 of 11) protein_coding-intron (ENSMUSG00000052430.15, intron 1 of 11) 92283 ENSMUSG00000105015.1 ENSMUSG00000105015 ENSMUST00000196903 Gm6059 processed_pseudogene Interval_143170 chr7 4130808 4131604 + 0 NA promoter-TSS (ENSMUSG00000030428.16) protein_coding-promoter-TSS (ENSMUSG00000030428.16) 5720 ENSMUSG00000085886.1 ENSMUSG00000085886 ENSMUST00000148318 D030047H15Rik antisense Interval_154729 chr8 22885929 22886253 + 0 NA intron (ENSMUSG00000031540.14, intron 2 of 17) protein_coding-intron (ENSMUSG00000031540.14, intron 3 of 17) 12502 ENSMUSG00000109652.1 ENSMUSG00000109652 ENSMUST00000210028 Gm45555 TEC Interval_139716 chr6 108055025 108055470 + 0 NA Intergenic Intergenic -9815 ENSMUSG00000034639.7 ENSMUSG00000034639 ENSMUST00000138140 Setmar protein_coding Interval_87161 chr19 46523430 46525368 + 0 NA Intergenic Intergenic 9739 ENSMUSG00000025034.9 ENSMUSG00000025034 ENSMUST00000235934 Trim8 protein_coding Interval_89976 chr2 26991463 26991725 + 0 NA intron (ENSMUSG00000014852.16, intron 19 of 28) protein_coding-intron (ENSMUSG00000014852.16, intron 19 of 23) -14977 ENSMUSG00000014852.16 ENSMUSG00000014852 ENSMUST00000147216 Adamts13 protein_coding Interval_173886 chrX 107003982 107004795 + 0 NA Intergenic Intergenic 83763 ENSMUSG00000049929.7 ENSMUSG00000049929 ENSMUST00000060576 Lpar4 protein_coding Interval_138354 chr6 87547764 87548145 + 0 NA Intergenic Intergenic 14547 ENSMUSG00000108184.1 ENSMUSG00000108184 ENSMUST00000203063 Gm44198 TEC Interval_115034 chr4 88757109 88758185 + 0 NA promoter-TSS (ENSMUSG00000081501.5) unprocessed_pseudogene-promoter-TSS (ENSMUSG00000081501.5) -68 ENSMUSG00000086074.2 ENSMUSG00000086074 ENSMUST00000137624 Gm13274 antisense Interval_1387 chr1 21240014 21240285 + 0 NA promoter-TSS (ENSMUSG00000025934.15) protein_coding-promoter-TSS (ENSMUSG00000025934.15) 5427 ENSMUSG00000102633.1 ENSMUSG00000102633 ENSMUST00000191648 Gm38224 TEC Interval_66551 chr16 35038122 35039670 + 0 NA intron (ENSMUSG00000035376.10, intron 2 of 2) protein_coding-intron (ENSMUSG00000035376.10, intron 2 of 6) -9719 ENSMUSG00000035376.10 ENSMUSG00000035376 ENSMUST00000231556 Hacd2 protein_coding Interval_59307 chr15 51070470 51072199 + 0 NA Intergenic Intergenic 173695 ENSMUSG00000115339.1 ENSMUSG00000115339 ENSMUST00000226611 Gm48913 lincRNA Interval_108194 chr3 122408874 122409164 + 0 NA intron (ENSMUSG00000028121.8, intron 6 of 6) protein_coding-intron (ENSMUSG00000028121.8, intron 6 of 6) -10738 ENSMUSG00000028121.8 ENSMUSG00000028121 ENSMUST00000197959 Bcar3 protein_coding Interval_59300 chr15 50905929 50906170 + 0 NA intron (ENSMUSG00000115339.1, intron 2 of 3) lincRNA-intron (ENSMUSG00000115339.1, intron 2 of 3) 8410 ENSMUSG00000115339.1 ENSMUSG00000115339 ENSMUST00000226611 Gm48913 lincRNA Interval_77568 chr17 91867280 91867520 + 0 NA intron (ENSMUSG00000117433.1, intron 1 of 3) lincRNA-intron (ENSMUSG00000117433.1, intron 1 of 5) 4739 ENSMUSG00000117433.1 ENSMUSG00000117433 ENSMUST00000234556 Gm41654 lincRNA Interval_141234 chr6 126118463 126118767 + 0 NA intron (ENSMUSG00000049107.13, intron 1 of 1) protein_coding-intron (ENSMUSG00000049107.13, intron 1 of 1) 46345 ENSMUSG00000049107.13 ENSMUSG00000049107 ENSMUST00000050484 Ntf3 protein_coding Interval_84544 chr19 12550697 12550979 + 0 NA intron (ENSMUSG00000024691.13, intron 1 of 4) protein_coding-intron (ENSMUSG00000024691.13, intron 1 of 4) -10015 ENSMUSG00000114761.1 ENSMUSG00000114761 ENSMUST00000224027 Gm47242 lincRNA Interval_150747 chr7 114076579 114077466 + 0 NA intron (ENSMUSG00000055723.6, intron 1 of 5) protein_coding-intron (ENSMUSG00000055723.6, intron 1 of 5) -9876 ENSMUSG00000110248.1 ENSMUSG00000110248 ENSMUST00000210417 Gm45615 antisense Interval_11713 chr1 184829534 184830421 + 0 NA exon (ENSMUSG00000073481.9, exon 3 of 3) protein_coding-exon (ENSMUSG00000073481.9, exon 3 of 3) -2720 ENSMUSG00000073481.9 ENSMUSG00000073481 ENSMUST00000160982 Mtarc2 protein_coding Interval_171419 chr9 118059246 118059913 + 0 NA exon (ENSMUSG00000039285.12, exon 7 of 7) protein_coding-exon (ENSMUSG00000039285.12, exon 7 of 7) 18963 ENSMUSG00000039285.12 ENSMUSG00000039285 ENSMUST00000123690 Azi2 protein_coding Interval_22595 chr11 12089581 12089824 + 0 NA Intergenic Intergenic -35399 ENSMUSG00000064802.1 ENSMUSG00000064802 ENSMUST00000082868 Gm24036 snRNA Interval_46121 chr13 61849961 61850252 + 0 NA intron (ENSMUSG00000113626.1, intron 1 of 2) transcribed_processed_pseudogene-intron (ENSMUSG00000113626.1, intron 1 of 2) -26442 ENSMUSG00000080451.1 ENSMUSG00000080451 ENSMUST00000116801 Gm24193 miRNA Interval_81318 chr18 57884989 57885760 + 0 NA intron (ENSMUSG00000024597.11, intron 1 of 26) protein_coding-intron (ENSMUSG00000024597.11, intron 1 of 26) -41831 ENSMUSG00000024597.11 ENSMUSG00000024597 ENSMUST00000236673 Slc12a2 protein_coding Interval_156060 chr8 43282945 43283910 + 0 NA Intergenic Intergenic 23509 ENSMUSG00000051176.6 ENSMUSG00000051176 ENSMUST00000082120 Zfp42 protein_coding Interval_5361 chr1 87881699 87881966 + 0 NA intron (ENSMUSG00000070738.10, intron 1 of 3) protein_coding-intron (ENSMUSG00000070738.10, intron 2 of 29) -15708 ENSMUSG00000103591.1 ENSMUSG00000103591 ENSMUST00000195720 Gm38365 TEC Interval_84536 chr19 12467459 12467855 + 0 NA exon (ENSMUSG00000039982.8, exon 9 of 9) protein_coding-exon (ENSMUSG00000039982.8, exon 9 of 9) 6878 ENSMUSG00000046805.10 ENSMUSG00000046805 ENSMUST00000081035 Mpeg1 protein_coding Interval_68914 chr16 88542421 88542717 + 0 NA Intergenic Intergenic 20614 ENSMUSG00000050520.4 ENSMUSG00000050520 ENSMUST00000049697 Cldn8 protein_coding Interval_48984 chr13 106737875 106738323 + 0 NA Intergenic Intergenic 23480 ENSMUSG00000114422.1 ENSMUSG00000114422 ENSMUST00000225713 Gm30411 lincRNA Interval_50248 chr14 11271539 11272681 + 0 NA Intergenic Intergenic -10367 ENSMUSG00000099218.1 ENSMUSG00000099218 ENSMUST00000184251 Mir5124b miRNA Interval_154109 chr8 12774755 12776655 + 0 NA intron (ENSMUSG00000031441.15, intron 1 of 27) protein_coding-intron (ENSMUSG00000031441.15, intron 1 of 29) 56214 ENSMUSG00000084780.7 ENSMUSG00000084780 ENSMUST00000135138 Gm15350 antisense Interval_40805 chr12 108519554 108519989 + 0 NA intron (ENSMUSG00000058070.14, intron 11 of 18) protein_coding-intron (ENSMUSG00000058070.14, intron 13 of 21) 35693 ENSMUSG00000097788.2 ENSMUSG00000097788 ENSMUST00000220796 Gm16596 antisense Interval_99915 chr2 165784886 165786063 + 0 NA TTS (ENSMUSG00000039671.18) protein_coding-TTS (ENSMUSG00000039671.18) -72210 ENSMUSG00000085274.1 ENSMUSG00000085274 ENSMUST00000155786 BC046401 processed_transcript Interval_82309 chr18 70547067 70547508 + 0 NA Intergenic Intergenic 30501 ENSMUSG00000098721.1 ENSMUSG00000098721 ENSMUST00000184246 Mir6357 miRNA Interval_68193 chr16 67545906 67546098 + 0 NA intron (ENSMUSG00000064115.13, intron 1 of 9) protein_coding-intron (ENSMUSG00000064115.13, intron 1 of 9) 47224 ENSMUSG00000082823.3 ENSMUSG00000082823 ENSMUST00000119911 Gm15828 processed_pseudogene Interval_36115 chr12 35998984 35999416 + 0 NA intron (ENSMUSG00000020581.11, intron 6 of 7) protein_coding-intron (ENSMUSG00000020581.11, intron 6 of 7) 6293 ENSMUSG00000020581.11 ENSMUSG00000020581 ENSMUST00000020898 Agr2 protein_coding Interval_141235 chr6 126141525 126142775 + 0 NA intron (ENSMUSG00000049107.13, intron 1 of 1) protein_coding-intron (ENSMUSG00000049107.13, intron 1 of 1) 22810 ENSMUSG00000049107.13 ENSMUSG00000049107 ENSMUST00000050484 Ntf3 protein_coding Interval_151468 chr7 122822417 122824183 + 0 NA Intergenic Intergenic -14663 ENSMUSG00000108529.1 ENSMUSG00000108529 ENSMUST00000205860 Gm29759 processed_pseudogene Interval_87887 chr19 56887567 56887817 + 0 NA intron (ENSMUSG00000025082.8, intron 4 of 13) protein_coding-intron (ENSMUSG00000025082.8, intron 4 of 13) 13443 ENSMUSG00000025082.8 ENSMUSG00000025082 ENSMUST00000026068 Vwa2 protein_coding Interval_148392 chr7 80992840 80994596 + 0 NA promoter-TSS (ENSMUSG00000005621.11) protein_coding-promoter-TSS (ENSMUSG00000005621.11) -965 ENSMUSG00000109302.1 ENSMUSG00000109302 ENSMUST00000207047 Gm44967 TEC Interval_14240 chr10 29440546 29441401 + 0 NA Intergenic Intergenic 15267 ENSMUSG00000111741.1 ENSMUSG00000111741 ENSMUST00000215343 Gm18903 unprocessed_pseudogene Interval_147533 chr7 68136271 68136498 + 0 NA intron (ENSMUSG00000005533.10, intron 2 of 20) protein_coding-intron (ENSMUSG00000005533.10, intron 2 of 20) -75454 ENSMUSG00000005533.10 ENSMUSG00000005533 ENSMUST00000208871 Igf1r protein_coding Interval_95003 chr2 102903891 102904115 + 0 NA Intergenic Intergenic -2545 ENSMUSG00000005087.17 ENSMUSG00000005087 ENSMUST00000124624 Cd44 protein_coding Interval_41466 chr12 114615320 114615798 + 0 NA TTS (ENSMUSG00000095416.6) IG_V_gene-TTS (ENSMUSG00000095416.6) 759 ENSMUSG00000095416.6 ENSMUSG00000095416 ENSMUST00000109711 Ighv1-12 IG_V_gene Interval_64399 chr16 11109100 11109666 + 0 NA intron (ENSMUSG00000022498.16, intron 4 of 4) protein_coding-intron (ENSMUSG00000022498.16, intron 4 of 11) 25170 ENSMUSG00000022498.16 ENSMUSG00000022498 ENSMUST00000118679 Txndc11 protein_coding Interval_106179 chr3 94371789 94372272 + 0 NA promoter-TSS (ENSMUSG00000028150.14) protein_coding-promoter-TSS (ENSMUSG00000028150.14) 5215 ENSMUSG00000104669.1 ENSMUSG00000104669 ENSMUST00000197971 Gm38411 antisense Interval_48590 chr13 100551222 100553239 + 0 NA intron (ENSMUSG00000021638.12, intron 1 of 8) protein_coding-intron (ENSMUSG00000021638.12, intron 1 of 8) 251 ENSMUSG00000021638.12 ENSMUSG00000021638 ENSMUST00000159515 Ocln protein_coding Interval_157401 chr8 70130986 70133429 + 0 NA exon (ENSMUSG00000036120.10, exon 9 of 9) protein_coding-exon (ENSMUSG00000036120.10, exon 9 of 9) 860 ENSMUSG00000071078.6 ENSMUSG00000071078 ENSMUST00000212851 Nr2c2ap protein_coding Interval_112489 chr4 41554972 41556484 + 0 NA intron (ENSMUSG00000028439.14, intron 1 of 5) protein_coding-intron (ENSMUSG00000028439.14, intron 1 of 5) 13810 ENSMUSG00000028439.14 ENSMUSG00000028439 ENSMUST00000146276 Fam219a protein_coding Interval_27133 chr11 63202134 63202465 + 0 NA Intergenic Intergenic 28385 ENSMUSG00000085532.1 ENSMUSG00000085532 ENSMUST00000123420 B430319H21Rik lincRNA Interval_90680 chr2 31847942 31848379 + 0 NA Intergenic Intergenic -2155 ENSMUSG00000026841.7 ENSMUSG00000026841 ENSMUST00000028188 Fibcd1 protein_coding Interval_74261 chr17 47774925 47775141 + 0 NA intron (ENSMUSG00000023990.18, intron 2 of 3) protein_coding-intron (ENSMUSG00000023990.18, intron 1 of 8) -12877 ENSMUSG00000023990.18 ENSMUSG00000023990 ENSMUST00000140715 Tfeb protein_coding Interval_73348 chr17 36418189 36418592 + 0 NA Intergenic Intergenic -8841 ENSMUSG00000092508.1 ENSMUSG00000092508 ENSMUST00000174378 H2-M10.5-ps1 unprocessed_pseudogene Interval_128831 chr5 115496994 115497323 + 0 NA Intergenic Intergenic -4703 ENSMUSG00000081282.2 ENSMUSG00000081282 ENSMUST00000121159 Gm13836 processed_pseudogene Interval_97100 chr2 131218453 131218800 + 0 NA Intergenic Intergenic 8229 ENSMUSG00000068264.11 ENSMUSG00000068264 ENSMUST00000110206 Ap5s1 protein_coding Interval_149908 chr7 102486405 102486897 + 0 NA intron (ENSMUSG00000043925.7, intron 1 of 1) protein_coding-intron (ENSMUSG00000043925.7, intron 1 of 1) 1662 ENSMUSG00000043925.7 ENSMUSG00000043925 ENSMUST00000051201 Olfr544 protein_coding Interval_18576 chr10 88095212 88095940 + 0 NA intron (ENSMUSG00000035365.15, intron 9 of 10) protein_coding-intron (ENSMUSG00000035365.15, intron 9 of 10) 4504 ENSMUSG00000035383.7 ENSMUSG00000035383 ENSMUST00000048621 Pmch protein_coding Interval_61766 chr15 83959761 83960689 + 0 NA intron (ENSMUSG00000022441.17, intron 10 of 31) protein_coding-intron (ENSMUSG00000022441.17, intron 10 of 31) -13626 ENSMUSG00000022441.17 ENSMUSG00000022441 ENSMUST00000122836 Efcab6 protein_coding Interval_163476 chr9 21622965 21623517 + 0 NA intron (ENSMUSG00000032187.16, intron 1 of 33) protein_coding-intron (ENSMUSG00000032187.16, intron 1 of 33) 6977 ENSMUSG00000032187.16 ENSMUSG00000032187 ENSMUST00000172996 Smarca4 protein_coding Interval_158476 chr8 83931058 83931349 + 0 NA exon (ENSMUSG00000013033.16, exon 7 of 24) protein_coding-exon (ENSMUSG00000013033.16, exon 7 of 24) -1373 ENSMUSG00000105878.1 ENSMUSG00000105878 ENSMUST00000200106 Gm44330 miRNA Interval_21471 chr10 128784137 128784522 + 0 NA Intergenic Intergenic -6581 ENSMUSG00000025355.7 ENSMUSG00000025355 ENSMUST00000218021 Mmp19 protein_coding Interval_170289 chr9 106715571 106717104 + 0 NA intron (ENSMUSG00000040661.6, intron 8 of 21) protein_coding-intron (ENSMUSG00000040661.6, intron 8 of 21) -31035 ENSMUSG00000040813.16 ENSMUSG00000040813 ENSMUST00000185645 Tex264 protein_coding Interval_166319 chr9 58278941 58281848 + 0 NA Intergenic Intergenic 27206 ENSMUSG00000032333.6 ENSMUSG00000032333 ENSMUST00000216864 Stoml1 protein_coding Interval_168054 chr9 75672379 75673775 + 0 NA intron (ENSMUSG00000032181.7, intron 5 of 6) protein_coding-intron (ENSMUSG00000032181.7, intron 6 of 11) 6425 ENSMUSG00000102176.1 ENSMUSG00000102176 ENSMUST00000194973 Gm37871 TEC Interval_159825 chr8 104105660 104106332 + 0 NA promoter-TSS (ENSMUSG00000110053.1) antisense-promoter-TSS (ENSMUSG00000110053.1) -123 ENSMUSG00000110053.1 ENSMUSG00000110053 ENSMUST00000210896 Gm29682 antisense Interval_101238 chr2 179722864 179723591 + 0 NA intron (ENSMUSG00000000305.12, intron 2 of 2) protein_coding-intron (ENSMUSG00000000305.12, intron 2 of 15) -53936 ENSMUSG00000000305.12 ENSMUSG00000000305 ENSMUST00000098996 Cdh4 protein_coding Interval_32242 chr11 106409490 106410829 + 0 NA exon (ENSMUSG00000020715.9, exon 13 of 22) protein_coding-exon (ENSMUSG00000020715.9, exon 13 of 22) -29358 ENSMUSG00000001029.15 ENSMUSG00000001029 ENSMUST00000106809 Icam2 protein_coding Interval_139995 chr6 113296095 113296996 + 0 NA intron (ENSMUSG00000030270.11, intron 3 of 4) protein_coding-intron (ENSMUSG00000030270.11, intron 17 of 20) 10129 ENSMUSG00000107812.1 ENSMUSG00000107812 ENSMUST00000203569 Gm43935 TEC Interval_59377 chr15 51981368 51981671 + 0 NA intron (ENSMUSG00000022314.10, intron 2 of 4) protein_coding-intron (ENSMUSG00000022314.10, intron 2 of 13) 9991 ENSMUSG00000022314.10 ENSMUSG00000022314 ENSMUST00000226529 Rad21 protein_coding Interval_79174 chr18 25423626 25424318 + 0 NA intron (ENSMUSG00000033632.16, intron 11 of 11) protein_coding-intron (ENSMUSG00000033632.16, intron 9 of 9) 32171 ENSMUSG00000089908.1 ENSMUSG00000089908 ENSMUST00000163015 Gm16558 processed_pseudogene Interval_143925 chr7 17895225 17896279 + 0 NA intron (ENSMUSG00000078793.10, intron 3 of 9) protein_coding-intron (ENSMUSG00000078793.10, intron 3 of 9) 23985 ENSMUSG00000078793.10 ENSMUSG00000078793 ENSMUST00000072381 Gm5155 protein_coding Interval_169656 chr9 99799602 99800361 + 0 NA Intergenic Intergenic -49464 ENSMUSG00000077215.1 ENSMUSG00000077215 ENSMUST00000104027 Gm23949 snoRNA Interval_156596 chr8 54030325 54030976 + 0 NA Intergenic Intergenic -47129 ENSMUSG00000031520.6 ENSMUSG00000031520 ENSMUST00000210831 Vegfc protein_coding Interval_171793 chr9 121218382 121219033 + 0 NA intron (ENSMUSG00000040936.15, intron 17 of 36) protein_coding-intron (ENSMUSG00000040936.15, intron 17 of 33) -23635 ENSMUSG00000084706.1 ENSMUSG00000084706 ENSMUST00000122757 Gm22987 misc_RNA Interval_155984 chr8 41442887 41445326 + 0 NA Intergenic Intergenic -31184 ENSMUSG00000031590.8 ENSMUSG00000031590 ENSMUST00000210873 Frg1 protein_coding Interval_7080 chr1 125519140 125519741 + 0 NA Intergenic Intergenic -41155 ENSMUSG00000026342.10 ENSMUSG00000026342 ENSMUST00000189443 Slc35f5 protein_coding Interval_143894 chr7 16991641 16992023 + 0 NA promoter-TSS (ENSMUSG00000041117.8) protein_coding-promoter-TSS (ENSMUSG00000041117.8) -876 ENSMUSG00000041117.8 ENSMUSG00000041117 ENSMUST00000094805 Ccdc8 protein_coding Interval_96752 chr2 127760559 127760801 + 0 NA intron (ENSMUSG00000027378.16, intron 12 of 19) protein_coding-intron (ENSMUSG00000027378.16, intron 12 of 19) -6610 ENSMUSG00000027378.16 ENSMUSG00000027378 ENSMUST00000148033 Nphp1 protein_coding Interval_42848 chr13 20322308 20322632 + 0 NA intron (ENSMUSG00000041112.17, intron 5 of 6) protein_coding-intron (ENSMUSG00000041112.17, intron 13 of 21) 39553 ENSMUSG00000041112.17 ENSMUSG00000041112 ENSMUST00000180767 Elmo1 protein_coding Interval_37631 chr12 70560018 70560699 + 0 NA Intergenic Intergenic 37760 ENSMUSG00000113302.1 ENSMUSG00000113302 ENSMUST00000221234 Gm32219 lincRNA Interval_524 chr1 6997341 6998182 + 0 NA promoter-TSS (ENSMUSG00000102534.1) processed_pseudogene-promoter-TSS (ENSMUSG00000102534.1) -456 ENSMUSG00000102534.1 ENSMUSG00000102534 ENSMUST00000193423 Gm37225 processed_pseudogene Interval_148877 chr7 89588215 89588463 + 0 NA Intergenic Intergenic -19367 ENSMUSG00000098019.1 ENSMUSG00000098019 ENSMUST00000182630 Gm2546 processed_pseudogene Interval_14688 chr10 39005351 39006094 + 0 NA exon (ENSMUSG00000019846.11, exon 2 of 2) protein_coding-exon (ENSMUSG00000019846.11, exon 2 of 2) 77433 ENSMUSG00000111431.1 ENSMUSG00000111431 ENSMUST00000213395 Gm17779 processed_pseudogene Interval_114659 chr4 83533286 83534048 + 0 NA intron (ENSMUSG00000052407.17, intron 1 of 25) protein_coding-intron (ENSMUSG00000052407.17, intron 1 of 25) -5899 ENSMUSG00000064606.1 ENSMUSG00000064606 ENSMUST00000082672 Gm25899 snRNA Interval_169518 chr9 98726772 98727427 + 0 NA Intergenic Intergenic -20833 ENSMUSG00000102458.1 ENSMUSG00000102458 ENSMUST00000195532 Pisrt1 TEC Interval_79960 chr18 36280386 36282052 + 0 NA exon (ENSMUSG00000043991.5, exon 1 of 2) protein_coding-exon (ENSMUSG00000043991.5, exon 1 of 2) 122 ENSMUSG00000043991.5 ENSMUSG00000043991 ENSMUST00000051301 Pura protein_coding Interval_92545 chr2 60448439 60448648 + 0 NA intron (ENSMUSG00000054580.14, intron 15 of 29) protein_coding-intron (ENSMUSG00000054580.14, intron 15 of 29) 37018 ENSMUSG00000087283.1 ENSMUSG00000087283 ENSMUST00000131457 Gm13580 antisense Interval_47870 chr13 94030322 94031220 + 0 NA Intergenic Intergenic -23072 ENSMUSG00000114174.1 ENSMUSG00000114174 ENSMUST00000223240 Cycs-ps3 processed_pseudogene Interval_2333 chr1 38128921 38130477 + 0 NA promoter-TSS (ENSMUSG00000026082.11) protein_coding-promoter-TSS (ENSMUSG00000026082.11) 102 ENSMUSG00000026082.11 ENSMUSG00000026082 ENSMUST00000195383 Rev1 protein_coding Interval_43151 chr13 24725272 24726254 + 0 NA intron (ENSMUSG00000036006.20, intron 22 of 22) protein_coding-intron (ENSMUSG00000036006.20, intron 22 of 22) -15469 ENSMUSG00000085861.1 ENSMUSG00000085861 ENSMUST00000136906 Armh2 protein_coding Interval_70850 chr17 15374557 15377097 + 0 NA promoter-TSS (ENSMUSG00000014773.13) protein_coding-promoter-TSS (ENSMUSG00000014773.13) -3996 ENSMUSG00000014773.13 ENSMUSG00000014773 ENSMUST00000143460 Dll1 protein_coding Interval_136350 chr6 53638973 53639225 + 0 NA intron (ENSMUSG00000053007.9, intron 3 of 6) protein_coding-intron (ENSMUSG00000053007.9, intron 7 of 10) -28671 ENSMUSG00000108004.1 ENSMUSG00000108004 ENSMUST00000204451 Gm44080 TEC Interval_88032 chr19 58135984 58136172 + 0 NA Intergenic Intergenic -40047 ENSMUSG00000117871.1 ENSMUSG00000117871 ENSMUST00000235250 Gm50287 lincRNA Interval_142590 chr6 143659202 143659584 + 0 NA Intergenic Intergenic -8105 ENSMUSG00000086887.1 ENSMUSG00000086887 ENSMUST00000150559 1700060C16Rik lincRNA Interval_33957 chr11 119653357 119653576 + 0 NA intron (ENSMUSG00000025583.15, intron 1 of 32) protein_coding-intron (ENSMUSG00000025583.15, intron 1 of 33) -6836 ENSMUSG00000083870.1 ENSMUSG00000083870 ENSMUST00000121392 Gm11761 processed_pseudogene Interval_174079 chrX 134426162 134426437 + 0 NA intron (ENSMUSG00000000223.13, intron 2 of 22) protein_coding-intron (ENSMUSG00000000223.13, intron 1 of 20) 21671 ENSMUSG00000000223.13 ENSMUSG00000000223 ENSMUST00000000228 Drp2 protein_coding Interval_49603 chr13 113429645 113430140 + 0 NA Intergenic Intergenic -6005 ENSMUSG00000114864.1 ENSMUSG00000114864 ENSMUST00000226016 Gm41071 lincRNA Interval_165230 chr9 45549869 45550682 + 0 NA intron (ENSMUSG00000032087.11, intron 3 of 32) protein_coding-intron (ENSMUSG00000032087.11, intron 3 of 32) 84537 ENSMUSG00000096202.1 ENSMUSG00000096202 ENSMUST00000179911 Gm22069 snRNA Interval_71877 chr17 26681485 26681693 + 0 NA intron (ENSMUSG00000015575.15, intron 1 of 3) protein_coding-intron (ENSMUSG00000015575.15, intron 1 of 3) 5432 ENSMUSG00000015575.15 ENSMUSG00000015575 ENSMUST00000167352 Atp6v0e protein_coding Interval_9697 chr1 161130916 161131795 + 0 NA promoter-TSS (ENSMUSG00000026705.16) protein_coding-promoter-TSS (ENSMUSG00000026705.16) -11368 ENSMUSG00000044835.15 ENSMUSG00000044835 ENSMUST00000052245 Ankrd45 protein_coding Interval_43357 chr13 29618227 29618892 + 0 NA intron (ENSMUSG00000006191.17, intron 9 of 10) protein_coding-intron (ENSMUSG00000006191.17, intron 9 of 15) -101105 ENSMUSG00000006191.17 ENSMUSG00000006191 ENSMUST00000129231 Cdkal1 protein_coding Interval_68294 chr16 72687816 72688751 + 0 NA intron (ENSMUSG00000022883.11, intron 1 of 1) protein_coding-intron (ENSMUSG00000022883.11, intron 1 of 28) -288066 ENSMUSG00000022883.11 ENSMUSG00000022883 ENSMUST00000232432 Robo1 protein_coding Interval_52655 chr14 48318872 48319087 + 0 NA Intergenic Intergenic 43636 ENSMUSG00000114991.1 ENSMUSG00000114991 ENSMUST00000228144 1700128I11Rik lincRNA Interval_171892 chr9 122146295 122146644 + 0 NA intron (ENSMUSG00000038145.17, intron 5 of 8) protein_coding-intron (ENSMUSG00000038145.17, intron 3 of 6) 4020 ENSMUSG00000111434.1 ENSMUSG00000111434 ENSMUST00000213905 Gm47121 sense_intronic Interval_96909 chr2 129408148 129409077 + 0 NA Intergenic Intergenic -29216 ENSMUSG00000081888.1 ENSMUSG00000081888 ENSMUST00000122326 Spcs2-ps unprocessed_pseudogene Interval_40111 chr12 101577108 101577327 + 0 NA intron (ENSMUSG00000047014.7, intron 17 of 25) protein_coding-intron (ENSMUSG00000047014.7, intron 18 of 26) 23138 ENSMUSG00000077058.1 ENSMUSG00000077058 ENSMUST00000103870 Gm24542 miRNA Interval_86410 chr19 40293724 40293967 + 0 NA TTS (ENSMUSG00000025006.18) protein_coding-TTS (ENSMUSG00000025006.18) -4126 ENSMUSG00000114796.1 ENSMUSG00000114796 ENSMUST00000225358 A930028N01Rik antisense Interval_72703 chr17 31642296 31643391 + 0 NA Intergenic Intergenic 1936 ENSMUSG00000118161.1 ENSMUSG00000118161 ENSMUST00000236305 Rps2-ps8 processed_pseudogene Interval_139181 chr6 97004878 97005656 + 0 NA intron (ENSMUSG00000046500.8, intron 3 of 5) protein_coding-intron (ENSMUSG00000046500.8, intron 3 of 5) 55126 ENSMUSG00000046500.8 ENSMUSG00000046500 ENSMUST00000203930 Tafa4 protein_coding Interval_11297 chr1 180803952 180804447 + 0 NA intron (ENSMUSG00000060743.12, intron 4 of 4) protein_coding-intron (ENSMUSG00000060743.12, intron 3 of 3) -9577 ENSMUSG00000073485.3 ENSMUSG00000073485 ENSMUST00000097448 H3f3aos antisense Interval_100658 chr2 170863731 170865022 + 0 NA intron (ENSMUSG00000027560.4, intron 6 of 7) protein_coding-intron (ENSMUSG00000027560.4, intron 6 of 7) 90448 ENSMUSG00000080955.1 ENSMUSG00000080955 ENSMUST00000117955 Gm14263 processed_pseudogene Interval_130399 chr5 127319167 127319376 + 0 NA intron (ENSMUSG00000034324.16, intron 1 of 8) protein_coding-intron (ENSMUSG00000034324.16, intron 1 of 8) 10254 ENSMUSG00000104971.1 ENSMUSG00000104971 ENSMUST00000196548 9430087B13Rik TEC Interval_158174 chr8 79532508 79534102 + 0 NA Intergenic Intergenic 17443 ENSMUSG00000097975.1 ENSMUSG00000097975 ENSMUST00000182695 Gm8079 processed_pseudogene Interval_153380 chr7 144216998 144217790 + 0 NA intron (ENSMUSG00000037541.22, intron 13 of 17) protein_coding-intron (ENSMUSG00000037541.22, intron 4 of 15) -21331 ENSMUSG00000037541.22 ENSMUSG00000037541 ENSMUST00000136979 Shank2 protein_coding Interval_42758 chr13 19115005 19115540 + 0 NA intron (ENSMUSG00000021314.13, intron 12 of 20) protein_coding-intron (ENSMUSG00000021314.13, intron 12 of 20) -43697 ENSMUSG00000113378.1 ENSMUSG00000113378 ENSMUST00000220695 Gm47660 processed_pseudogene Interval_86872 chr19 44517956 44519383 + 0 NA intron (ENSMUSG00000051984.13, intron 1 of 3) protein_coding-intron (ENSMUSG00000051984.13, intron 22 of 25) 1924 ENSMUSG00000051984.13 ENSMUSG00000051984 ENSMUST00000165758 Sec31b protein_coding Interval_63900 chr16 4461898 4462168 + 0 NA Intergenic Intergenic -41535 ENSMUSG00000005580.11 ENSMUSG00000005580 ENSMUST00000005719 Adcy9 protein_coding Interval_170682 chr9 110082342 110082598 + 0 NA TTS (ENSMUSG00000032479.15) protein_coding-TTS (ENSMUSG00000032479.15) 3045 ENSMUSG00000032480.17 ENSMUSG00000032480 ENSMUST00000197979 Dhx30 protein_coding Interval_14601 chr10 36899210 36899421 + 0 NA Intergenic Intergenic -92451 ENSMUSG00000019777.16 ENSMUSG00000019777 ENSMUST00000123010 Hdac2 protein_coding Interval_148977 chr7 90580001 90580193 + 0 NA intron (ENSMUSG00000052572.19, intron 3 of 27) protein_coding-intron (ENSMUSG00000052572.19, intron 3 of 27) -104102 ENSMUSG00000030614.8 ENSMUSG00000030614 ENSMUST00000123622 Tmem126b protein_coding Interval_37732 chr12 71487190 71488346 + 0 NA promoter-TSS (ENSMUSG00000113630.1) lincRNA-promoter-TSS (ENSMUSG00000113630.1) -517 ENSMUSG00000113630.1 ENSMUSG00000113630 ENSMUST00000220948 4930404H11Rik lincRNA Interval_137140 chr6 68018953 68019558 + 0 NA Intergenic Intergenic 2537 ENSMUSG00000095497.2 ENSMUSG00000095497 ENSMUST00000103314 Igkv1-122 IG_V_gene Interval_170092 chr9 104372790 104374006 + 0 NA intron (ENSMUSG00000099599.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000099599.1, intron 1 of 2) 11566 ENSMUSG00000099599.1 ENSMUSG00000099599 ENSMUST00000191599 Gm28548 lincRNA Interval_18901 chr10 92949853 92950507 + 0 NA intron (ENSMUSG00000020014.17, intron 39 of 67) protein_coding-intron (ENSMUSG00000020014.17, intron 39 of 66) 82782 ENSMUSG00000020014.17 ENSMUSG00000020014 ENSMUST00000171781 Cfap54 protein_coding Interval_164730 chr9 40853292 40854042 + 0 NA Intergenic Intergenic -20460 ENSMUSG00000054360.4 ENSMUSG00000054360 ENSMUST00000067375 Bsx protein_coding Interval_106734 chr3 100183752 100183946 + 0 NA intron (ENSMUSG00000027865.10, intron 6 of 12) protein_coding-intron (ENSMUSG00000027865.10, intron 6 of 13) -16838 ENSMUSG00000027865.10 ENSMUSG00000027865 ENSMUST00000200036 Gdap2 protein_coding Interval_170776 chr9 110685348 110685948 + 0 NA intron (ENSMUSG00000019659.8, intron 1 of 5) protein_coding-intron (ENSMUSG00000019659.8, intron 1 of 6) -10694 ENSMUSG00000104945.1 ENSMUSG00000104945 ENSMUST00000197421 Gm35715 antisense Interval_50173 chr14 8565460 8565974 + 0 NA intron (ENSMUSG00000021747.12, intron 5 of 12) protein_coding-intron (ENSMUSG00000021747.12, intron 5 of 15) 100522 ENSMUSG00000021747.12 ENSMUSG00000021747 ENSMUST00000225744 4930452B06Rik protein_coding Interval_620 chr1 8978262 8978598 + 0 NA intron (ENSMUSG00000025909.16, intron 4 of 4) protein_coding-intron (ENSMUSG00000025909.16, intron 4 of 4) -14809 ENSMUSG00000066693.2 ENSMUSG00000066693 ENSMUST00000085919 Gm7493 processed_pseudogene Interval_96818 chr2 128565656 128567595 + 0 NA Intergenic Intergenic -8391 ENSMUSG00000082671.2 ENSMUSG00000082671 ENSMUST00000122132 Gm14006 processed_pseudogene Interval_122807 chr5 25668044 25668722 + 0 NA Intergenic Intergenic -8228 ENSMUSG00000059244.6 ENSMUSG00000059244 ENSMUST00000072180 Gm10062 lincRNA Interval_74559 chr17 53402870 53403262 + 0 NA intron (ENSMUSG00000023931.5, intron 7 of 8) protein_coding-intron (ENSMUSG00000023931.5, intron 10 of 12) 43139 ENSMUSG00000117241.1 ENSMUSG00000117241 ENSMUST00000232913 Gm9214 processed_pseudogene Interval_3305 chr1 56326774 56327023 + 0 NA Intergenic Intergenic -124509 ENSMUSG00000100944.1 ENSMUSG00000100944 ENSMUST00000185232 Gm28900 processed_pseudogene Interval_137692 chr6 79469785 79470057 + 0 NA Intergenic Intergenic -71287 ENSMUSG00000107618.1 ENSMUSG00000107618 ENSMUST00000204707 Gm6261 processed_pseudogene Interval_142206 chr6 138477718 138478066 + 0 NA intron (ENSMUSG00000030226.12, intron 2 of 4) protein_coding-intron (ENSMUSG00000030226.12, intron 2 of 4) 33919 ENSMUSG00000107675.1 ENSMUSG00000107675 ENSMUST00000204221 Gm30332 antisense Interval_19807 chr10 109465883 109467113 + 0 NA Intergenic Intergenic -80011 ENSMUSG00000112253.1 ENSMUSG00000112253 ENSMUST00000219849 Gm47329 processed_pseudogene Interval_60343 chr15 73044691 73045726 + 0 NA intron (ENSMUSG00000047921.17, intron 4 of 17) protein_coding-intron (ENSMUSG00000047921.17, intron 3 of 21) 15837 ENSMUSG00000047921.17 ENSMUSG00000047921 ENSMUST00000228960 Trappc9 protein_coding Interval_63260 chr15 99982343 99982720 + 0 NA intron (ENSMUSG00000023025.16, intron 1 of 15) protein_coding-intron (ENSMUSG00000023025.16, intron 1 of 15) -9244 ENSMUSG00000100084.2 ENSMUSG00000100084 ENSMUST00000188271 2310068J16Rik antisense Interval_95786 chr2 116230692 116230970 + 0 NA Intergenic Intergenic -154735 ENSMUSG00000103562.1 ENSMUSG00000103562 ENSMUST00000195368 2810405F15Rik TEC Interval_67339 chr16 46548158 46548635 + 0 NA Intergenic Intergenic 10561 ENSMUSG00000116915.1 ENSMUSG00000116915 ENSMUST00000231611 Gm17900 processed_pseudogene Interval_166826 chr9 63058684 63059734 + 0 NA Intergenic Intergenic 23764 ENSMUSG00000111144.1 ENSMUSG00000111144 ENSMUST00000214934 Gm48193 lincRNA Interval_77794 chr18 3566492 3566743 + 0 NA Intergenic Intergenic 7942 ENSMUSG00000117454.1 ENSMUSG00000117454 ENSMUST00000234359 Gm50090 processed_pseudogene Interval_54506 chr14 70317115 70317828 + 0 NA exon (ENSMUSG00000022094.15, exon 2 of 2) protein_coding-exon (ENSMUSG00000022094.15, exon 2 of 2) -6231 ENSMUSG00000022094.15 ENSMUSG00000022094 ENSMUST00000142598 Slc39a14 protein_coding Interval_4430 chr1 74103970 74104232 + 0 NA intron (ENSMUSG00000055322.16, intron 1 of 33) protein_coding-intron (ENSMUSG00000055322.16, intron 1 of 34) -5425 ENSMUSG00000055322.16 ENSMUSG00000055322 ENSMUST00000190599 Tns1 protein_coding Interval_106476 chr3 96587411 96587717 + 0 NA intron (ENSMUSG00000028104.14, intron 1 of 7) protein_coding-intron (ENSMUSG00000028104.14, intron 1 of 7) 6595 ENSMUSG00000028104.14 ENSMUSG00000028104 ENSMUST00000145001 Polr3gl protein_coding Interval_30582 chr11 95237737 95239327 + 0 NA Intergenic Intergenic -12900 ENSMUSG00000085992.1 ENSMUSG00000085992 ENSMUST00000150818 Gm11515 lincRNA Interval_150487 chr7 111121978 111123375 + 0 NA promoter-TSS (ENSMUSG00000110424.1) processed_transcript-promoter-TSS (ENSMUSG00000110424.1) 8 ENSMUSG00000110424.1 ENSMUSG00000110424 ENSMUST00000210340 1700012D14Rik processed_transcript Interval_24216 chr11 31581572 31581779 + 0 NA Intergenic Intergenic 90052 ENSMUSG00000044502.16 ENSMUSG00000044502 ENSMUST00000109415 Bod1 protein_coding Interval_74978 chr17 58817735 58818038 + 0 NA intron (ENSMUSG00000117100.1, intron 2 of 3) lincRNA-intron (ENSMUSG00000117100.1, intron 2 of 3) -14260 ENSMUSG00000117298.1 ENSMUSG00000117298 ENSMUST00000232925 Gm9284 processed_pseudogene Interval_77403 chr17 88485958 88487026 + 0 NA exon (ENSMUSG00000034998.18, exon 6 of 6) protein_coding-exon (ENSMUSG00000034998.18, exon 6 of 6) 45757 ENSMUSG00000034998.18 ENSMUSG00000034998 ENSMUST00000141052 Foxn2 protein_coding Interval_161144 chr8 117775514 117776287 + 0 NA Intergenic Intergenic 17317 ENSMUSG00000031843.2 ENSMUSG00000031843 ENSMUST00000211818 Mphosph6 protein_coding Interval_108445 chr3 127269485 127270507 + 0 NA exon (ENSMUSG00000105445.1, exon 1 of 1) TEC-exon (ENSMUSG00000105445.1, exon 1 of 1) 2293 ENSMUSG00000105445.1 ENSMUSG00000105445 ENSMUST00000196937 Gm42972 TEC Interval_12534 chr1 194959276 194959654 + 0 NA TTS (ENSMUSG00000016494.9) protein_coding-TTS (ENSMUSG00000016494.9) 17495 ENSMUSG00000097325.2 ENSMUSG00000097325 ENSMUST00000180780 Gm16897 antisense Interval_766 chr1 10814916 10815764 + 0 NA Intergenic Intergenic 10059 ENSMUSG00000100212.1 ENSMUSG00000100212 ENSMUST00000189483 Gm5522 processed_pseudogene Interval_2990 chr1 51922541 51923185 + 0 NA Intergenic Intergenic -6951 ENSMUSG00000018417.14 ENSMUSG00000018417 ENSMUST00000126657 Myo1b protein_coding Interval_38818 chr12 82639645 82640943 + 0 NA intron (ENSMUSG00000021219.16, intron 1 of 4) protein_coding-intron (ENSMUSG00000021219.16, intron 1 of 13) 22795 ENSMUSG00000021219.16 ENSMUSG00000021219 ENSMUST00000201512 Rgs6 protein_coding Interval_30118 chr11 89339750 89340683 + 0 NA Intergenic Intergenic 37493 ENSMUSG00000085798.1 ENSMUSG00000085798 ENSMUST00000140754 Gm2018 lincRNA Interval_136859 chr6 61545888 61546068 + 0 NA intron (ENSMUSG00000039578.17, intron 3 of 3) protein_coding-intron (ENSMUSG00000039578.17, intron 4 of 9) 145371 ENSMUSG00000107757.1 ENSMUSG00000107757 ENSMUST00000204456 Gm43898 processed_pseudogene Interval_87950 chr19 57333047 57335713 + 0 NA intron (ENSMUSG00000097785.2, intron 1 of 2) processed_transcript-intron (ENSMUSG00000097785.2, intron 1 of 2) 10778 ENSMUSG00000117670.1 ENSMUSG00000117670 ENSMUST00000235809 Gm50270 lincRNA Interval_172780 chrX 48633294 48634140 + 0 NA intron (ENSMUSG00000031105.16, intron 3 of 9) protein_coding-intron (ENSMUSG00000031105.16, intron 4 of 10) 9755 ENSMUSG00000031105.16 ENSMUSG00000031105 ENSMUST00000177710 Slc25a14 protein_coding Interval_62941 chr15 98056749 98057081 + 0 NA exon (ENSMUSG00000033075.17, exon 13 of 18) protein_coding-exon (ENSMUSG00000033075.17, exon 13 of 18) -12837 ENSMUSG00000088325.1 ENSMUSG00000088325 ENSMUST00000157700 Gm25668 snoRNA Interval_45737 chr13 57523367 57523994 + 0 NA intron (ENSMUSG00000056222.15, intron 6 of 10) protein_coding-intron (ENSMUSG00000056222.15, intron 4 of 9) 247002 ENSMUSG00000114411.1 ENSMUSG00000114411 ENSMUST00000224461 Gm48176 processed_pseudogene Interval_34051 chr11 120201774 120202090 + 0 NA Intergenic Intergenic -13181 ENSMUSG00000075389.3 ENSMUSG00000075389 ENSMUST00000145437 2810410L24Rik processed_transcript Interval_12455 chr1 193599131 193599430 + 0 NA Intergenic Intergenic -89106 ENSMUSG00000097850.2 ENSMUSG00000097850 ENSMUST00000180420 Mir205hg lincRNA Interval_9323 chr1 156228937 156230444 + 0 NA Intergenic Intergenic -2397 ENSMUSG00000102932.1 ENSMUSG00000102932 ENSMUST00000193704 Gm38113 processed_pseudogene Interval_37617 chr12 70366007 70366190 + 0 NA Intergenic Intergenic 18636 ENSMUSG00000112945.1 ENSMUSG00000112945 ENSMUST00000223521 Gm32151 bidirectional_promoter_lncRNA Interval_169283 chr9 96138774 96140621 + 0 NA intron (ENSMUSG00000041440.18, intron 3 of 15) protein_coding-intron (ENSMUSG00000041440.18, intron 4 of 15) -31219 ENSMUSG00000041440.18 ENSMUSG00000041440 ENSMUST00000189249 Gk5 protein_coding Interval_14242 chr10 29466203 29466793 + 0 NA intron (ENSMUSG00000019880.10, intron 2 of 3) protein_coding-intron (ENSMUSG00000019880.10, intron 4 of 4) 26923 ENSMUSG00000110986.1 ENSMUSG00000110986 ENSMUST00000216122 Gm20276 TEC Interval_120391 chr4 148293302 148293738 + 0 NA Intergenic Intergenic -13333 ENSMUSG00000087027.2 ENSMUSG00000087027 ENSMUST00000129579 Gm13206 lincRNA Interval_109439 chr3 142433737 142435208 + 0 NA Intergenic Intergenic -68324 ENSMUSG00000105504.4 ENSMUSG00000105504 ENSMUST00000199578 Gbp5 protein_coding Interval_174545 chrX 157540011 157540252 + 0 NA promoter-TSS (ENSMUSG00000082002.1) processed_pseudogene-promoter-TSS (ENSMUSG00000082002.1) -735 ENSMUSG00000082002.1 ENSMUSG00000082002 ENSMUST00000122274 Gm6568 processed_pseudogene Interval_144789 chr7 28267260 28268638 + 0 NA promoter-TSS (ENSMUSG00000046058.7) protein_coding-promoter-TSS (ENSMUSG00000046058.7) 68 ENSMUSG00000046058.7 ENSMUSG00000046058 ENSMUST00000059596 Eid2 protein_coding Interval_51677 chr14 31294808 31295059 + 0 NA intron (ENSMUSG00000019027.8, intron 28 of 77) protein_coding-intron (ENSMUSG00000019027.8, intron 28 of 77) -25422 ENSMUSG00000019027.8 ENSMUSG00000019027 ENSMUST00000228429 Dnah1 protein_coding Interval_51042 chr14 21757110 21757290 + 0 NA intron (ENSMUSG00000021770.11, intron 1 of 5) protein_coding-intron (ENSMUSG00000021770.11, intron 1 of 5) 6652 ENSMUSG00000021770.11 ENSMUSG00000021770 ENSMUST00000142023 Samd8 protein_coding Interval_86125 chr19 36893696 36895193 + 0 NA TTS (ENSMUSG00000024811.11) protein_coding-TTS (ENSMUSG00000024811.11) 25155 ENSMUSG00000047632.11 ENSMUSG00000047632 ENSMUST00000057337 Fgfbp3 protein_coding Interval_37858 chr12 72627681 72628907 + 0 NA intron (ENSMUSG00000109482.2, intron 1 of 5) protein_coding-intron (ENSMUSG00000109482.2, intron 1 of 4) 543 ENSMUSG00000109482.2 ENSMUSG00000109482 ENSMUST00000209092 Gm4756 protein_coding Interval_35297 chr12 19989523 19990758 + 0 NA Intergenic Intergenic -12637 ENSMUSG00000113287.1 ENSMUSG00000113287 ENSMUST00000221342 Gm40853 unprocessed_pseudogene Interval_87698 chr19 55148775 55149122 + 0 NA Intergenic Intergenic -21745 ENSMUSG00000024978.11 ENSMUSG00000024978 ENSMUST00000236422 Gpam protein_coding Interval_21255 chr10 127511942 127513352 + 0 NA Intergenic Intergenic -2320 ENSMUSG00000040280.10 ENSMUSG00000040280 ENSMUST00000035735 Ndufa4l2 protein_coding Interval_4028 chr1 66715513 66716051 + 0 NA TTS (ENSMUSG00000026005.15) protein_coding-TTS (ENSMUSG00000026005.15) 14875 ENSMUSG00000026005.15 ENSMUSG00000026005 ENSMUST00000190404 Rpe protein_coding Interval_149676 chr7 100567097 100567781 + 0 NA intron (ENSMUSG00000030706.17, intron 2 of 3) protein_coding-intron (ENSMUSG00000030706.17, intron 2 of 6) -4483 ENSMUSG00000108990.1 ENSMUSG00000108990 ENSMUST00000208267 Gm44648 processed_pseudogene Interval_138268 chr6 86740368 86742224 + 0 NA TTS (ENSMUSG00000029994.17) protein_coding-TTS (ENSMUSG00000029994.17) 7807 ENSMUSG00000107961.1 ENSMUSG00000107961 ENSMUST00000204551 Gm44036 lincRNA Interval_154521 chr8 18916448 18917987 + 0 NA Intergenic Intergenic -10684 ENSMUSG00000110651.1 ENSMUSG00000110651 ENSMUST00000212105 Gm45770 processed_pseudogene Interval_102968 chr3 33872395 33874102 + 0 NA intron (ENSMUSG00000105475.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000105475.1, intron 1 of 2) 24336 ENSMUSG00000105475.1 ENSMUSG00000105475 ENSMUST00000197426 4930431L21Rik lincRNA Interval_4516 chr1 74756763 74757007 + 0 NA Intergenic Intergenic -7913 ENSMUSG00000098351.1 ENSMUSG00000098351 ENSMUST00000184199 Gm27507 misc_RNA Interval_100243 chr2 167894978 167895667 + 0 NA Intergenic Intergenic 36737 ENSMUSG00000085411.1 ENSMUSG00000085411 ENSMUST00000142937 Gm14319 lincRNA Interval_3402 chr1 57988996 57990438 + 0 NA intron (ENSMUSG00000054770.16, intron 4 of 9) protein_coding-intron (ENSMUSG00000054770.16, intron 4 of 9) -26736 ENSMUSG00000054770.16 ENSMUSG00000054770 ENSMUST00000160130 Kctd18 protein_coding Interval_107823 chr3 115837192 115838484 + 0 NA Intergenic Intergenic -50014 ENSMUSG00000033554.17 ENSMUSG00000033554 ENSMUST00000199970 Dph5 protein_coding Interval_65457 chr16 22428377 22429716 + 0 NA intron (ENSMUSG00000013089.15, intron 4 of 12) protein_coding-intron (ENSMUSG00000013089.15, intron 5 of 12) -27217 ENSMUSG00000013089.15 ENSMUSG00000013089 ENSMUST00000170393 Etv5 protein_coding Interval_70460 chr17 10371628 10372253 + 0 NA Intergenic Intergenic 47338 ENSMUSG00000099384.6 ENSMUSG00000099384 ENSMUST00000188715 1700110C19Rik lincRNA Interval_49200 chr13 109398615 109399162 + 0 NA intron (ENSMUSG00000021699.17, intron 1 of 14) protein_coding-intron (ENSMUSG00000021699.17, intron 1 of 14) 74144 ENSMUSG00000076946.2 ENSMUSG00000076946 ENSMUST00000103758 Mir582 miRNA Interval_163127 chr9 15479229 15479877 + 0 NA Intergenic Intergenic -13879 ENSMUSG00000058173.12 ENSMUSG00000058173 ENSMUST00000178999 Smco4 protein_coding Interval_75523 chr17 67764566 67765739 + 0 NA intron (ENSMUSG00000032796.8, intron 19 of 62) protein_coding-intron (ENSMUSG00000032796.8, intron 19 of 62) 67887 ENSMUSG00000032796.8 ENSMUSG00000032796 ENSMUST00000233224 Lama1 protein_coding Interval_78598 chr18 15042884 15043114 + 0 NA intron (ENSMUSG00000036225.15, intron 1 of 4) protein_coding-intron (ENSMUSG00000036225.15, intron 1 of 4) 21099 ENSMUSG00000036225.15 ENSMUSG00000036225 ENSMUST00000234685 Kctd1 protein_coding Interval_49869 chr13 117414949 117415333 + 0 NA Intergenic Intergenic 43934 ENSMUSG00000114358.1 ENSMUSG00000114358 ENSMUST00000223786 Gm5200 processed_pseudogene Interval_32549 chr11 108449959 108450586 + 0 NA intron (ENSMUSG00000020728.17, intron 5 of 5) protein_coding-intron (ENSMUSG00000020728.17, intron 5 of 27) 26999 ENSMUSG00000082544.1 ENSMUSG00000082544 ENSMUST00000119828 Gm11667 processed_pseudogene Interval_87165 chr19 46558319 46559586 + 0 NA promoter-TSS (ENSMUSG00000025035.9) protein_coding-promoter-TSS (ENSMUSG00000025035.9) -560 ENSMUSG00000025035.9 ENSMUSG00000025035 ENSMUST00000235489 Arl3 protein_coding Interval_81942 chr18 66083622 66085160 + 0 NA intron (ENSMUSG00000046318.16, intron 5 of 5) protein_coding-intron (ENSMUSG00000046318.16, intron 4 of 11) 47564 ENSMUSG00000117907.1 ENSMUSG00000117907 ENSMUST00000235539 Gm50142 lincRNA Interval_62559 chr15 94640098 94641666 + 0 NA intron (ENSMUSG00000063296.5, intron 2 of 2) protein_coding-intron (ENSMUSG00000063296.5, intron 2 of 7) 11650 ENSMUSG00000063296.5 ENSMUSG00000063296 ENSMUST00000080141 Tmem117 protein_coding Interval_116300 chr4 109461618 109461946 + 0 NA intron (ENSMUSG00000028557.10, intron 3 of 4) protein_coding-intron (ENSMUSG00000028557.10, intron 1 of 2) 22946 ENSMUSG00000028557.10 ENSMUSG00000028557 ENSMUST00000145980 Rnf11 protein_coding Interval_3953 chr1 65048701 65049177 + 0 NA intron (ENSMUSG00000070870.6, intron 1 of 1) protein_coding-intron (ENSMUSG00000070870.6, intron 2 of 2) 2180 ENSMUSG00000070870.6 ENSMUSG00000070870 ENSMUST00000161960 Cryge protein_coding Interval_87155 chr19 46499785 46500387 + 0 NA Intergenic Intergenic -14574 ENSMUSG00000025034.9 ENSMUSG00000025034 ENSMUST00000235934 Trim8 protein_coding Interval_158978 chr8 88374888 88375816 + 0 NA Intergenic Intergenic -15769 ENSMUSG00000110280.1 ENSMUSG00000110280 ENSMUST00000211701 Gm45497 processed_pseudogene Interval_38015 chr12 73978954 73979167 + 0 NA intron (ENSMUSG00000021113.5, intron 4 of 4) protein_coding-intron (ENSMUSG00000021113.5, intron 8 of 9) 14579 ENSMUSG00000021113.5 ENSMUSG00000021113 ENSMUST00000220909 Snapc1 protein_coding Interval_73580 chr17 40746457 40746877 + 0 NA Intergenic Intergenic 19547 ENSMUSG00000073396.5 ENSMUSG00000073396 ENSMUST00000161110 Esp1 protein_coding Interval_26822 chr11 60857175 60858096 + 0 NA intron (ENSMUSG00000042569.13, intron 6 of 6) protein_coding-intron (ENSMUSG00000042569.13, intron 6 of 6) 21403 ENSMUSG00000043284.12 ENSMUSG00000043284 ENSMUST00000155031 Tmem11 protein_coding Interval_168597 chr9 84018125 84019067 + 0 NA intron (ENSMUSG00000111757.1, intron 1 of 2) protein_coding-intron (ENSMUSG00000032263.14, intron 8 of 10) 6221 ENSMUSG00000111757.1 ENSMUSG00000111757 ENSMUST00000215223 Gm46124 antisense Interval_54655 chr14 72947938 72948966 + 0 NA Intergenic Intergenic 31452 ENSMUSG00000115085.1 ENSMUSG00000115085 ENSMUST00000226196 Gm9198 processed_pseudogene Interval_69313 chr16 92131547 92131754 + 0 NA intron (ENSMUSG00000116747.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000116747.1, intron 1 of 2) 5362 ENSMUSG00000116747.1 ENSMUSG00000116747 ENSMUST00000231220 Gm41496 lincRNA Interval_1448 chr1 23604317 23604618 + 0 NA Intergenic Intergenic 29880 ENSMUSG00000099503.1 ENSMUSG00000099503 ENSMUST00000191140 Gm28822 lincRNA Interval_168799 chr9 87175744 87176029 + 0 NA exon (ENSMUSG00000042761.14, exon 3 of 4) protein_coding-exon (ENSMUSG00000042761.14, exon 3 of 4) 13527 ENSMUSG00000102830.1 ENSMUSG00000102830 ENSMUST00000194991 Gm37012 TEC Interval_96675 chr2 127070111 127071349 + 0 NA promoter-TSS (ENSMUSG00000001999.15) protein_coding-promoter-TSS (ENSMUSG00000001999.15) 65 ENSMUSG00000001999.15 ENSMUSG00000001999 ENSMUST00000142737 Blvra protein_coding Interval_119895 chr4 140731183 140732400 + 0 NA TTS (ENSMUSG00000040935.12) protein_coding-TTS (ENSMUSG00000040935.12) 9856 ENSMUSG00000040935.12 ENSMUSG00000040935 ENSMUST00000130267 Padi6 protein_coding Interval_168709 chr9 86177365 86178012 + 0 NA Intergenic Intergenic -1673 ENSMUSG00000111418.1 ENSMUSG00000111418 ENSMUST00000216119 Gm18016 processed_pseudogene Interval_141106 chr6 125024581 125024871 + 0 NA promoter-TSS (ENSMUSG00000038346.18) protein_coding-promoter-TSS (ENSMUSG00000038346.18) 15011 ENSMUSG00000038346.18 ENSMUSG00000038346 ENSMUST00000137325 Zfp384 protein_coding Interval_39491 chr12 88426954 88427346 + 0 NA intron (ENSMUSG00000021044.15, intron 1 of 7) protein_coding-intron (ENSMUSG00000021044.15, intron 4 of 10) 6854 ENSMUSG00000021044.15 ENSMUSG00000021044 ENSMUST00000223538 Adck1 protein_coding Interval_106990 chr3 102644898 102645618 + 0 NA Intergenic Intergenic 41459 ENSMUSG00000104685.1 ENSMUSG00000104685 ENSMUST00000198096 Gm19202 processed_pseudogene Interval_85413 chr19 25591505 25591956 + 0 NA intron (ENSMUSG00000024837.15, intron 3 of 3) protein_coding-intron (ENSMUSG00000024837.15, intron 4 of 4) -18571 ENSMUSG00000042372.5 ENSMUSG00000042372 ENSMUST00000048935 Dmrt3 protein_coding Interval_87879 chr19 56811251 56812352 + 0 NA intron (ENSMUSG00000035173.14, intron 2 of 15) protein_coding-intron (ENSMUSG00000035173.14, intron 1 of 14) -10815 ENSMUSG00000035173.14 ENSMUSG00000035173 ENSMUST00000140184 Ccdc186 protein_coding Interval_103483 chr3 44080177 44081014 + 0 NA Intergenic Intergenic 124874 ENSMUSG00000103148.1 ENSMUSG00000103148 ENSMUST00000193249 Gm37746 TEC Interval_81824 chr18 65023426 65023966 + 0 NA promoter-TSS (ENSMUSG00000024589.18) protein_coding-promoter-TSS (ENSMUSG00000024589.18) -22521 ENSMUSG00000117895.1 ENSMUSG00000117895 ENSMUST00000237218 Gm50368 antisense Interval_47934 chr13 94473265 94473516 + 0 NA intron (ENSMUSG00000021686.6, intron 1 of 11) protein_coding-intron (ENSMUSG00000021686.6, intron 17 of 26) 527 ENSMUSG00000021686.6 ENSMUSG00000021686 ENSMUST00000220505 Ap3b1 protein_coding Interval_81587 chr18 61910718 61912107 + 0 NA exon (ENSMUSG00000032735.15, exon 1 of 23) protein_coding-exon (ENSMUSG00000032735.15, exon 1 of 23) 411 ENSMUSG00000032735.15 ENSMUSG00000032735 ENSMUST00000049378 Ablim3 protein_coding Interval_94266 chr2 87207623 87208042 + 0 NA Intergenic Intergenic -1138 ENSMUSG00000070857.4 ENSMUSG00000070857 ENSMUST00000079966 Olfr1113 protein_coding Interval_29495 chr11 84434806 84435933 + 0 NA intron (ENSMUSG00000018697.14, intron 8 of 8) protein_coding-intron (ENSMUSG00000018697.14, intron 12 of 12) 78153 ENSMUSG00000018697.14 ENSMUSG00000018697 ENSMUST00000148434 Aatf protein_coding Interval_126900 chr5 96911682 96912100 + 0 NA TTS (ENSMUSG00000105871.1) TEC-TTS (ENSMUSG00000105871.1) 1350 ENSMUSG00000105871.1 ENSMUSG00000105871 ENSMUST00000196944 Gm43147 TEC Interval_130199 chr5 124880038 124880278 + 0 NA intron (ENSMUSG00000079215.8, intron 1 of 3) protein_coding-intron (ENSMUSG00000079215.8, intron 2 of 3) 6006 ENSMUSG00000079215.8 ENSMUSG00000079215 ENSMUST00000134473 Zfp664 protein_coding Interval_69137 chr16 90888109 90888572 + 0 NA intron (ENSMUSG00000039903.18, intron 3 of 5) protein_coding-intron (ENSMUSG00000039903.18, intron 4 of 7) -26840 ENSMUSG00000083226.2 ENSMUSG00000083226 ENSMUST00000117990 Gm7831 processed_pseudogene Interval_49786 chr13 115118661 115119295 + 0 NA Intergenic Intergenic 2851 ENSMUSG00000096021.1 ENSMUSG00000096021 ENSMUST00000122677 Gm25985 snRNA Interval_41396 chr12 113293686 113295325 + 0 NA Intergenic Intergenic -5573 ENSMUSG00000076612.8 ENSMUSG00000076612 ENSMUST00000195192 Ighg2c IG_C_gene Interval_130187 chr5 124806908 124807914 + 0 NA intron (ENSMUSG00000038011.15, intron 1 of 26) protein_coding-intron (ENSMUSG00000038011.15, intron 52 of 78) 10901 ENSMUSG00000105583.1 ENSMUSG00000105583 ENSMUST00000197269 Gm43777 antisense Interval_86067 chr19 36207806 36208544 + 0 NA intron (ENSMUSG00000117998.1, intron 2 of 3) lincRNA-intron (ENSMUSG00000117998.1, intron 2 of 3) 25595 ENSMUSG00000117998.1 ENSMUSG00000117998 ENSMUST00000236660 Gm32081 lincRNA Interval_89510 chr2 21336301 21336669 + 0 NA Intergenic Intergenic -31082 ENSMUSG00000045967.11 ENSMUSG00000045967 ENSMUST00000155760 Gpr158 protein_coding Interval_129612 chr5 121326319 121326671 + 0 NA intron (ENSMUSG00000042744.16, intron 45 of 75) protein_coding-intron (ENSMUSG00000042744.16, intron 45 of 75) -30349 ENSMUSG00000077347.1 ENSMUSG00000077347 ENSMUST00000104159 Gm24671 snRNA Interval_97522 chr2 138437358 138437715 + 0 NA intron (ENSMUSG00000062098.11, intron 2 of 3) protein_coding-intron (ENSMUSG00000062098.11, intron 2 of 5) -151856 ENSMUSG00000085911.1 ENSMUSG00000085911 ENSMUST00000155923 Gm14061 lincRNA Interval_53307 chr14 55918399 55919170 + 0 NA Intergenic Intergenic -18804 ENSMUSG00000022223.9 ENSMUSG00000022223 ENSMUST00000227677 Sdr39u1 protein_coding Interval_49261 chr13 109914990 109915486 + 0 NA intron (ENSMUSG00000021699.17, intron 7 of 15) protein_coding-intron (ENSMUSG00000021699.17, intron 6 of 14) 11429 ENSMUSG00000084651.1 ENSMUSG00000084651 ENSMUST00000122702 Mir1904 miRNA Interval_43226 chr13 25932732 25933384 + 0 NA intron (ENSMUSG00000086531.2, intron 1 of 2) lincRNA-intron (ENSMUSG00000086531.2, intron 1 of 3) 53235 ENSMUSG00000086531.2 ENSMUSG00000086531 ENSMUST00000225724 Gm11351 lincRNA Interval_81227 chr18 56630628 56630858 + 0 NA Intergenic Intergenic -9646 ENSMUSG00000118153.1 ENSMUSG00000118153 ENSMUST00000236670 Gm50288 lincRNA Interval_153085 chr7 141263678 141266519 + 0 NA promoter-TSS (ENSMUSG00000025498.15) protein_coding-promoter-TSS (ENSMUSG00000025498.15) 1325 ENSMUSG00000025498.15 ENSMUSG00000025498 ENSMUST00000146373 Irf7 protein_coding Interval_155220 chr8 27889468 27889978 + 0 NA Intergenic Intergenic -128612 ENSMUSG00000064882.1 ENSMUSG00000064882 ENSMUST00000082948 Gm24202 snRNA Interval_48983 chr13 106735509 106735846 + 0 NA Intergenic Intergenic 25902 ENSMUSG00000114422.1 ENSMUSG00000114422 ENSMUST00000225713 Gm30411 lincRNA Interval_78819 chr18 20802106 20802447 + 0 NA Intergenic Intergenic 42316 ENSMUSG00000088549.1 ENSMUSG00000088549 ENSMUST00000157924 Gm24959 snRNA Interval_77441 chr17 88791616 88792501 + 0 NA promoter-TSS (ENSMUSG00000024107.7) protein_coding-promoter-TSS (ENSMUSG00000024107.7) -18002 ENSMUSG00000024107.7 ENSMUSG00000024107 ENSMUST00000234269 Lhcgr protein_coding Interval_107061 chr3 103223816 103225384 + 0 NA Intergenic Intergenic 22663 ENSMUSG00000104976.1 ENSMUSG00000104976 ENSMUST00000200621 Gm43060 processed_pseudogene Interval_164363 chr9 35922555 35923313 + 0 NA Intergenic Intergenic 14492 ENSMUSG00000078934.4 ENSMUSG00000078934 ENSMUST00000176153 Pate13 protein_coding Interval_102440 chr3 26166712 26167184 + 0 NA intron (ENSMUSG00000063887.13, intron 2 of 7) protein_coding-intron (ENSMUSG00000063887.13, intron 2 of 2) -165003 ENSMUSG00000074664.3 ENSMUSG00000074664 ENSMUST00000195446 A830092H15Rik antisense Interval_21602 chr10 130480850 130481096 + 0 NA intron (ENSMUSG00000091511.3, intron 1 of 5) protein_coding-intron (ENSMUSG00000091511.3, intron 1 of 5) -10364 ENSMUSG00000112712.1 ENSMUSG00000112712 ENSMUST00000218030 Gm18755 processed_pseudogene Interval_141299 chr6 127034912 127036057 + 0 NA Intergenic Intergenic 19898 ENSMUSG00000000183.6 ENSMUSG00000000183 ENSMUST00000000187 Fgf6 protein_coding Interval_23084 chr11 19835105 19836418 + 0 NA Intergenic Intergenic 52109 ENSMUSG00000081820.1 ENSMUSG00000081820 ENSMUST00000120073 Gm12029 processed_pseudogene Interval_105922 chr3 90104076 90104902 + 0 NA intron (ENSMUSG00000027939.11, intron 1 of 39) protein_coding-intron (ENSMUSG00000027939.11, intron 1 of 39) 355 ENSMUSG00000027939.11 ENSMUSG00000027939 ENSMUST00000200410 Nup210l protein_coding Interval_114178 chr4 65839552 65839940 + 0 NA intron (ENSMUSG00000028373.16, intron 9 of 21) protein_coding-intron (ENSMUSG00000028373.16, intron 10 of 22) 234497 ENSMUSG00000051675.13 ENSMUSG00000051675 ENSMUST00000156922 Trim32 protein_coding Interval_4773 chr1 78535527 78536997 + 0 NA intron (ENSMUSG00000012187.13, intron 6 of 6) protein_coding-intron (ENSMUSG00000012187.13, intron 5 of 5) 24450 ENSMUSG00000012187.13 ENSMUSG00000012187 ENSMUST00000125458 Mogat1 protein_coding Interval_136435 chr6 54429081 54430416 + 0 NA promoter-TSS (ENSMUSG00000073067.10) processed_transcript-promoter-TSS (ENSMUSG00000073067.10) -23135 ENSMUSG00000086040.8 ENSMUSG00000086040 ENSMUST00000131043 Wipf3 protein_coding Interval_12131 chr1 189929616 189930175 + 0 NA Intergenic Intergenic -7642 ENSMUSG00000026603.13 ENSMUSG00000026603 ENSMUST00000144452 Smyd2 protein_coding Interval_17469 chr10 77097015 77097977 + 0 NA intron (ENSMUSG00000001435.15, intron 2 of 41) protein_coding-intron (ENSMUSG00000001435.15, intron 1 of 40) -37499 ENSMUSG00000001435.15 ENSMUSG00000001435 ENSMUST00000156009 Col18a1 protein_coding Interval_127265 chr5 101983881 101984306 + 0 NA intron (ENSMUSG00000043940.15, intron 3 of 15) protein_coding-intron (ENSMUSG00000043940.15, intron 3 of 66) -2535 ENSMUSG00000043940.15 ENSMUSG00000043940 ENSMUST00000172512 Wdfy3 protein_coding Interval_136977 chr6 65291493 65292135 + 0 NA Intergenic Intergenic -17670 ENSMUSG00000107630.1 ENSMUSG00000107630 ENSMUST00000203962 Gm44061 processed_pseudogene Interval_135491 chr6 39611733 39612105 + 0 NA intron (ENSMUSG00000002413.15, intron 21 of 21) protein_coding-intron (ENSMUSG00000002413.15, intron 21 of 21) -19135 ENSMUSG00000086582.1 ENSMUSG00000086582 ENSMUST00000128218 Gm16272 antisense Interval_131639 chr5 139006873 139007750 + 0 NA Intergenic Intergenic 12255 ENSMUSG00000075585.3 ENSMUSG00000075585 ENSMUST00000187923 6330403L08Rik antisense Interval_89012 chr2 14513090 14513356 + 0 NA intron (ENSMUSG00000084901.6, intron 1 of 4) processed_transcript-intron (ENSMUSG00000084901.6, intron 1 of 4) 624 ENSMUSG00000084901.6 ENSMUSG00000084901 ENSMUST00000193364 Gm13266 processed_transcript Interval_156418 chr8 48010572 48011829 + 0 NA Intergenic Intergenic -2067 ENSMUSG00000110624.1 ENSMUSG00000110624 ENSMUST00000212073 Gm32052 lincRNA Interval_36412 chr12 44092088 44092302 + 0 NA Intergenic Intergenic -29561 ENSMUSG00000112038.1 ENSMUSG00000112038 ENSMUST00000219963 Gm47056 processed_pseudogene Interval_126583 chr5 90394605 90395756 + 0 NA Intergenic Intergenic -2093 ENSMUSG00000106725.1 ENSMUSG00000106725 ENSMUST00000201590 Gm43363 TEC Interval_17047 chr10 70846311 70847641 + 0 NA promoter-TSS (ENSMUSG00000112883.1) lincRNA-promoter-TSS (ENSMUSG00000112883.1) -41 ENSMUSG00000112883.1 ENSMUSG00000112883 ENSMUST00000217694 Gm48023 lincRNA Interval_173798 chrX 104413253 104414393 + 0 NA promoter-TSS (ENSMUSG00000031333.7) protein_coding-promoter-TSS (ENSMUSG00000031333.7) 33 ENSMUSG00000031333.7 ENSMUSG00000031333 ENSMUST00000140333 Abcb7 protein_coding Interval_156370 chr8 47763171 47764626 + 0 NA TTS (ENSMUSG00000110604.1) lincRNA-TTS (ENSMUSG00000110604.1) 2227 ENSMUSG00000110604.1 ENSMUSG00000110604 ENSMUST00000212236 Gm45824 lincRNA Interval_87286 chr19 47384136 47386114 + 0 NA intron (ENSMUSG00000053617.12, intron 2 of 4) protein_coding-intron (ENSMUSG00000053617.12, intron 3 of 14) 25234 ENSMUSG00000053617.12 ENSMUSG00000053617 ENSMUST00000237828 Sh3pxd2a protein_coding Interval_124033 chr5 37577269 37577473 + 0 NA intron (ENSMUSG00000029123.8, intron 3 of 11) protein_coding-intron (ENSMUSG00000029123.8, intron 3 of 11) 139800 ENSMUSG00000029123.8 ENSMUSG00000029123 ENSMUST00000094836 Stk32b protein_coding Interval_103761 chr3 52412710 52414418 + 0 NA Intergenic Intergenic -11844 ENSMUSG00000103454.1 ENSMUSG00000103454 ENSMUST00000194115 Gm38098 processed_pseudogene Interval_2407 chr1 39029919 39030356 + 0 NA Intergenic Intergenic 27500 ENSMUSG00000104188.1 ENSMUSG00000104188 ENSMUST00000195476 Gm37821 lincRNA Interval_69679 chr16 95379822 95380036 + 0 NA intron (ENSMUSG00000040732.20, intron 5 of 10) protein_coding-intron (ENSMUSG00000040732.20, intron 5 of 9) -24253 ENSMUSG00000116720.1 ENSMUSG00000116720 ENSMUST00000232605 Gm31641 antisense Interval_24658 chr11 35703279 35703733 + 0 NA intron (ENSMUSG00000056427.10, intron 35 of 35) protein_coding-intron (ENSMUSG00000056427.10, intron 35 of 35) -65978 ENSMUSG00000018846.8 ENSMUSG00000018846 ENSMUST00000018990 Pank3 protein_coding Interval_162895 chr9 11946955 11947760 + 0 NA Intergenic Intergenic 30892 ENSMUSG00000111111.1 ENSMUSG00000111111 ENSMUST00000217391 Gm47037 TEC Interval_556 chr1 7298969 7299650 + 0 NA Intergenic Intergenic -16142 ENSMUSG00000102768.1 ENSMUSG00000102768 ENSMUST00000192649 Gm19002 processed_pseudogene Interval_151396 chr7 122084476 122084743 + 0 NA TTS (ENSMUSG00000030869.11) protein_coding-TTS (ENSMUSG00000030869.11) -11474 ENSMUSG00000108573.1 ENSMUSG00000108573 ENSMUST00000206292 Gm44986 TEC Interval_89569 chr2 22895166 22896205 + 0 NA promoter-TSS (ENSMUSG00000069136.4) pseudogene-promoter-TSS (ENSMUSG00000069136.4) 51 ENSMUSG00000069136.4 ENSMUSG00000069136 ENSMUST00000091396 A130006I12Rik pseudogene Interval_64849 chr16 16526191 16527470 + 0 NA intron (ENSMUSG00000022788.16, intron 1 of 8) protein_coding-intron (ENSMUSG00000022788.16, intron 1 of 16) -15493 ENSMUSG00000089861.1 ENSMUSG00000089861 ENSMUST00000160015 Gm16139 processed_pseudogene Interval_6238 chr1 103784516 103784853 + 0 NA Intergenic Intergenic 60339 ENSMUSG00000102325.1 ENSMUSG00000102325 ENSMUST00000192862 Gm37789 TEC Interval_136765 chr6 59335317 59336120 + 0 NA Intergenic Intergenic 90576 ENSMUSG00000045441.5 ENSMUSG00000045441 ENSMUST00000051065 Gprin3 protein_coding Interval_3890 chr1 64461511 64462040 + 0 NA Intergenic Intergenic -7198 ENSMUSG00000099658.1 ENSMUSG00000099658 ENSMUST00000187877 Gm28980 processed_pseudogene Interval_141927 chr6 135417230 135418175 + 0 NA Intergenic Intergenic 55157 ENSMUSG00000030208.15 ENSMUSG00000030208 ENSMUST00000111907 Emp1 protein_coding Interval_7933 chr1 134636185 134637457 + 0 NA Intergenic Intergenic 9699 ENSMUSG00000097435.1 ENSMUSG00000097435 ENSMUST00000181197 Gm26783 lincRNA Interval_57389 chr15 10496099 10497346 + 0 NA exon (ENSMUSG00000022248.14, exon 6 of 6) protein_coding-exon (ENSMUSG00000022248.14, exon 6 of 6) 10673 ENSMUSG00000022248.14 ENSMUSG00000022248 ENSMUST00000170100 Rad1 protein_coding Interval_28676 chr11 77708057 77709261 + 0 NA intron (ENSMUSG00000037857.16, intron 3 of 3) protein_coding-intron (ENSMUSG00000037857.16, intron 3 of 3) 13175 ENSMUSG00000000724.10 ENSMUSG00000000724 ENSMUST00000078623 Cryba1 protein_coding Interval_5218 chr1 86502803 86504720 + 0 NA Intergenic Intergenic -22976 ENSMUSG00000026238.14 ENSMUSG00000026238 ENSMUST00000188533 Ptma protein_coding Interval_26951 chr11 61789632 61790626 + 0 NA intron (ENSMUSG00000004798.14, intron 19 of 24) protein_coding-intron (ENSMUSG00000004798.14, intron 21 of 26) 13892 ENSMUSG00000004798.14 ENSMUSG00000004798 ENSMUST00000157049 Ulk2 protein_coding Interval_118894 chr4 134321353 134322180 + 0 NA intron (ENSMUSG00000028834.13, intron 2 of 6) protein_coding-intron (ENSMUSG00000028834.13, intron 4 of 8) 1778 ENSMUSG00000028834.13 ENSMUSG00000028834 ENSMUST00000135576 Trim63 protein_coding Interval_9453 chr1 157294456 157295778 + 0 NA intron (ENSMUSG00000070565.11, intron 2 of 2) protein_coding-intron (ENSMUSG00000070565.11, intron 2 of 17) 54926 ENSMUSG00000102326.1 ENSMUSG00000102326 ENSMUST00000193958 Gm37788 TEC Interval_173158 chrX 73671699 73674734 + 0 NA promoter-TSS (ENSMUSG00000019558.14) protein_coding-promoter-TSS (ENSMUSG00000019558.14) -2291 ENSMUSG00000019558.14 ENSMUSG00000019558 ENSMUST00000167828 Slc6a8 protein_coding Interval_155696 chr8 36217302 36218869 + 0 NA intron (ENSMUSG00000039633.7, intron 11 of 11) protein_coding-intron (ENSMUSG00000039633.7, intron 11 of 11) 29713 ENSMUSG00000110176.1 ENSMUSG00000110176 ENSMUST00000209235 Gm35520 lincRNA Interval_142780 chr6 145600859 145601922 + 0 NA intron (ENSMUSG00000054966.13, intron 1 of 1) protein_coding-intron (ENSMUSG00000054966.13, intron 1 of 1) -14367 ENSMUSG00000067338.6 ENSMUSG00000067338 ENSMUST00000087445 Tuba3b protein_coding Interval_91323 chr2 37775893 37776630 + 0 NA promoter-TSS (ENSMUSG00000035403.10) protein_coding-promoter-TSS (ENSMUSG00000035403.10) -14910 ENSMUSG00000035403.10 ENSMUSG00000035403 ENSMUST00000137693 Crb2 protein_coding Interval_35420 chr12 21479071 21479799 + 0 NA Intergenic Intergenic 61556 ENSMUSG00000097055.2 ENSMUSG00000097055 ENSMUST00000227598 Gm4419 antisense Interval_25956 chr11 53116221 53116870 + 0 NA intron (ENSMUSG00000087668.1, intron 2 of 3) protein_coding-intron (ENSMUSG00000036264.9, intron 6 of 15) 3511 ENSMUSG00000087668.1 ENSMUSG00000087668 ENSMUST00000137096 Gm11186 antisense Interval_25782 chr11 51690359 51691987 + 0 NA Intergenic Intergenic -2299 ENSMUSG00000007777.9 ENSMUSG00000007777 ENSMUST00000109098 0610009B22Rik protein_coding Interval_77010 chr17 85620697 85622435 + 0 NA promoter-TSS (ENSMUSG00000099635.1) antisense-promoter-TSS (ENSMUSG00000099635.1) -565 ENSMUSG00000099635.1 ENSMUSG00000099635 ENSMUST00000188560 Gm28528 antisense Interval_69033 chr16 90229381 90230200 + 0 NA TTS (ENSMUSG00000022983.16) protein_coding-TTS (ENSMUSG00000022983.16) 9036 ENSMUSG00000022982.10 ENSMUSG00000022982 ENSMUST00000232505 Sod1 protein_coding Interval_24537 chr11 34155160 34155730 + 0 NA Intergenic Intergenic 13618 ENSMUSG00000086243.1 ENSMUSG00000086243 ENSMUST00000131630 Gm12121 lincRNA Interval_11339 chr1 181061964 181062334 + 0 NA promoter-TSS (ENSMUSG00000103328.1) lincRNA-promoter-TSS (ENSMUSG00000103328.1) 79 ENSMUSG00000103328.1 ENSMUSG00000103328 ENSMUST00000192478 Gm37406 lincRNA Interval_166843 chr9 63148646 63149562 + 0 NA promoter-TSS (ENSMUSG00000022245.15) protein_coding-promoter-TSS (ENSMUSG00000022245.15) -2093 ENSMUSG00000022245.15 ENSMUSG00000022245 ENSMUST00000055281 Skor1 protein_coding Interval_131107 chr5 135174098 135176007 + 0 NA intron (ENSMUSG00000029681.12, intron 2 of 4) protein_coding-intron (ENSMUSG00000029681.12, intron 2 of 5) 6607 ENSMUSG00000029681.12 ENSMUSG00000029681 ENSMUST00000145329 Bcl7b protein_coding Interval_51390 chr14 27183450 27184022 + 0 NA intron (ENSMUSG00000021895.10, intron 3 of 13) protein_coding-intron (ENSMUSG00000021895.10, intron 3 of 13) -26661 ENSMUSG00000114349.1 ENSMUSG00000114349 ENSMUST00000225776 Gm7591 processed_pseudogene Interval_126903 chr5 96943808 96943999 + 0 NA Intergenic Intergenic 3606 ENSMUSG00000105257.1 ENSMUSG00000105257 ENSMUST00000198256 Gm43144 TEC Interval_66151 chr16 31969853 31971191 + 0 NA exon (ENSMUSG00000083853.1, exon 1 of 1) processed_pseudogene-exon (ENSMUSG00000083853.1, exon 1 of 1) 284 ENSMUSG00000083853.1 ENSMUSG00000083853 ENSMUST00000121730 Gm15696 processed_pseudogene Interval_119957 chr4 141106521 141107188 + 0 NA intron (ENSMUSG00000045004.3, intron 2 of 4) protein_coding-intron (ENSMUSG00000045004.3, intron 10 of 14) 2869 ENSMUSG00000045004.3 ENSMUSG00000045004 ENSMUST00000181353 Spata21 protein_coding Interval_4477 chr1 74441901 74442351 + 0 NA intron (ENSMUSG00000033364.13, intron 23 of 25) protein_coding-intron (ENSMUSG00000033364.13, intron 21 of 23) 18440 ENSMUSG00000026175.12 ENSMUSG00000026175 ENSMUST00000163018 Vil1 protein_coding Interval_118145 chr4 129213636 129213926 + 0 NA promoter-TSS (ENSMUSG00000028811.12) protein_coding-promoter-TSS (ENSMUSG00000028811.12) 1537 ENSMUSG00000028811.12 ENSMUSG00000028811 ENSMUST00000147248 Yars protein_coding Interval_95264 chr2 105369987 105371007 + 0 NA intron (ENSMUSG00000055312.2, intron 2 of 2) protein_coding-intron (ENSMUSG00000055312.2, intron 3 of 3) 24851 ENSMUSG00000005973.6 ENSMUSG00000005973 ENSMUST00000127019 Rcn1 protein_coding Interval_93201 chr2 71116358 71118613 + 0 NA promoter-TSS (ENSMUSG00000027015.4) protein_coding-promoter-TSS (ENSMUSG00000027015.4) -438 ENSMUSG00000027015.4 ENSMUSG00000027015 ENSMUST00000028403 Cybrd1 protein_coding Interval_156452 chr8 48342310 48343453 + 0 NA intron (ENSMUSG00000031561.16, intron 7 of 26) protein_coding-intron (ENSMUSG00000031561.16, intron 7 of 28) -71896 ENSMUSG00000110480.1 ENSMUSG00000110480 ENSMUST00000212653 Gm32842 processed_pseudogene Interval_79239 chr18 26709992 26712029 + 0 NA Intergenic Intergenic 207087 ENSMUSG00000117456.1 ENSMUSG00000117456 ENSMUST00000234570 Gm49976 lincRNA Interval_119945 chr4 141053478 141055096 + 0 NA promoter-TSS (ENSMUSG00000040860.16) protein_coding-promoter-TSS (ENSMUSG00000040860.16) 3912 ENSMUSG00000040860.16 ENSMUSG00000040860 ENSMUST00000144196 Crocc protein_coding Interval_64354 chr16 10744084 10744722 + 0 NA exon (ENSMUSG00000068663.14, exon 24 of 24) protein_coding-exon (ENSMUSG00000068663.14, exon 24 of 24) 41133 ENSMUSG00000038037.5 ENSMUSG00000038037 ENSMUST00000038099 Socs1 protein_coding Interval_77108 chr17 86621145 86621769 + 0 NA intron (ENSMUSG00000045038.14, intron 12 of 14) protein_coding-intron (ENSMUSG00000045038.14, intron 13 of 15) 64039 ENSMUSG00000117568.1 ENSMUSG00000117568 ENSMUST00000234033 Gm18832 processed_pseudogene Interval_154096 chr8 12645267 12645959 + 0 NA intron (ENSMUSG00000000759.14, intron 11 of 15) protein_coding-intron (ENSMUSG00000000759.14, intron 11 of 21) -20482 ENSMUSG00000088641.1 ENSMUSG00000088641 ENSMUST00000158016 Gm26483 miRNA Interval_153112 chr7 141434580 141435375 + 0 NA promoter-TSS (ENSMUSG00000019082.18) protein_coding-promoter-TSS (ENSMUSG00000019082.18) -377 ENSMUSG00000019082.18 ENSMUSG00000019082 ENSMUST00000150026 Slc25a22 protein_coding Interval_34959 chr12 15628016 15628868 + 0 NA intron (ENSMUSG00000098158.2, intron 1 of 4) transcribed_processed_pseudogene-intron (ENSMUSG00000098158.2, intron 1 of 4) 47188 ENSMUSG00000113339.1 ENSMUSG00000113339 ENSMUST00000222077 Gm17915 processed_pseudogene Interval_46956 chr13 73727408 73727994 + 0 NA Intergenic Intergenic 23985 ENSMUSG00000021566.7 ENSMUSG00000021566 ENSMUST00000160958 Slc6a19os antisense Interval_4718 chr1 77585244 77585981 + 0 NA Intergenic Intergenic 14940 ENSMUSG00000101506.1 ENSMUSG00000101506 ENSMUST00000185671 Gm28385 processed_pseudogene Interval_67068 chr16 42500649 42501522 + 0 NA Intergenic Intergenic -162841 ENSMUSG00000116679.1 ENSMUSG00000116679 ENSMUST00000232064 Gm49739 processed_pseudogene Interval_137952 chr6 83696484 83696806 + 0 NA intron (ENSMUSG00000085794.5, intron 3 of 5) antisense-intron (ENSMUSG00000085794.5, intron 3 of 5) -5846 ENSMUSG00000099263.1 ENSMUSG00000099263 ENSMUST00000184900 Gm27772 misc_RNA Interval_26194 chr11 55005891 55006803 + 0 NA intron (ENSMUSG00000018340.13, intron 7 of 19) protein_coding-intron (ENSMUSG00000018340.13, intron 7 of 24) 27068 ENSMUSG00000018340.13 ENSMUSG00000018340 ENSMUST00000148298 Anxa6 protein_coding Interval_111191 chr4 14554756 14555461 + 0 NA intron (ENSMUSG00000040569.13, intron 5 of 18) protein_coding-intron (ENSMUSG00000040569.13, intron 5 of 18) 66389 ENSMUSG00000040569.13 ENSMUSG00000040569 ENSMUST00000143105 Slc26a7 protein_coding Interval_26005 chr11 53441460 53441693 + 0 NA Intergenic Intergenic 10553 ENSMUSG00000018238.6 ENSMUSG00000018238 ENSMUST00000018382 Gdf9 protein_coding Interval_152233 chr7 130807909 130808320 + 0 NA intron (ENSMUSG00000040298.6, intron 10 of 15) protein_coding-intron (ENSMUSG00000040298.6, intron 10 of 15) 33947 ENSMUSG00000040298.6 ENSMUSG00000040298 ENSMUST00000208593 Btbd16 protein_coding Interval_160520 chr8 110243929 110245118 + 0 NA Intergenic Intergenic -22468 ENSMUSG00000059854.8 ENSMUSG00000059854 ENSMUST00000212034 Hydin protein_coding Interval_146262 chr7 45028888 45029181 + 0 NA exon (ENSMUSG00000046574.8, exon 12 of 14) protein_coding-exon (ENSMUSG00000046574.8, exon 12 of 14) 5360 ENSMUSG00000046574.8 ENSMUSG00000046574 ENSMUST00000210410 Prr12 protein_coding Interval_51841 chr14 32682909 32683202 + 0 NA intron (ENSMUSG00000071540.4, intron 2 of 3) protein_coding-intron (ENSMUSG00000071540.4, intron 1 of 3) 2238 ENSMUSG00000071540.4 ENSMUSG00000071540 ENSMUST00000226958 3425401B19Rik protein_coding Interval_84360 chr19 10363928 10364327 + 0 NA Intergenic Intergenic -25356 ENSMUSG00000024743.16 ENSMUSG00000024743 ENSMUST00000235717 Syt7 protein_coding Interval_152831 chr7 138472905 138473364 + 0 NA Intergenic Intergenic 59357 ENSMUSG00000110354.1 ENSMUSG00000110354 ENSMUST00000211580 Gm45686 lincRNA Interval_109041 chr3 135409373 135411307 + 0 NA exon (ENSMUSG00000028165.9, exon 2 of 2) protein_coding-exon (ENSMUSG00000028165.9, exon 2 of 2) 12739 ENSMUSG00000028165.9 ENSMUSG00000028165 ENSMUST00000198784 Cisd2 protein_coding Interval_69712 chr16 95728844 95729086 + 0 NA Intergenic Intergenic -25335 ENSMUSG00000117167.1 ENSMUSG00000117167 ENSMUST00000233819 Gm6599 processed_pseudogene Interval_38364 chr12 77796923 77797132 + 0 NA Intergenic Intergenic 17782 ENSMUSG00000077707.1 ENSMUSG00000077707 ENSMUST00000104519 Gm24070 snoRNA Interval_120453 chr4 148710340 148712289 + 0 NA Intergenic Intergenic -2389 ENSMUSG00000087273.1 ENSMUSG00000087273 ENSMUST00000139895 Gm13203 lincRNA Interval_133101 chr5 149815639 149816336 + 0 NA Intergenic Intergenic -4236 ENSMUSG00000106740.1 ENSMUSG00000106740 ENSMUST00000202876 Gm21221 lincRNA Interval_151822 chr7 126884109 126885343 + 0 NA promoter-TSS (ENSMUSG00000059981.12) protein_coding-promoter-TSS (ENSMUSG00000059981.12) -6896 ENSMUSG00000093768.1 ENSMUSG00000093768 ENSMUST00000175690 Gm20650 processed_transcript Interval_79696 chr18 34581634 34581925 + 0 NA intron (ENSMUSG00000049357.11, intron 4 of 5) protein_coding-intron (ENSMUSG00000049357.11, intron 4 of 5) -2692 ENSMUSG00000035984.14 ENSMUSG00000035984 ENSMUST00000154342 Nme5 protein_coding Interval_2022 chr1 35943045 35946250 + 0 NA Intergenic Intergenic -14272 ENSMUSG00000103096.1 ENSMUSG00000103096 ENSMUST00000191763 Gm8022 processed_pseudogene Interval_84890 chr19 18630311 18632220 + 0 NA promoter-TSS (ENSMUSG00000037847.14) protein_coding-promoter-TSS (ENSMUSG00000037847.14) 524 ENSMUSG00000024725.13 ENSMUSG00000024725 ENSMUST00000138860 Ostf1 protein_coding Interval_101266 chr2 179984433 179985061 + 0 NA Intergenic Intergenic -8101 ENSMUSG00000039117.16 ENSMUSG00000039117 ENSMUST00000154961 Taf4 protein_coding Interval_22936 chr11 17603187 17603420 + 0 NA Intergenic Intergenic 35880 ENSMUSG00000082411.1 ENSMUSG00000082411 ENSMUST00000119079 Gm12016 processed_pseudogene Interval_24741 chr11 36513511 36513757 + 0 NA intron (ENSMUSG00000049336.16, intron 2 of 28) protein_coding-intron (ENSMUSG00000049336.16, intron 2 of 28) -209248 ENSMUSG00000065173.1 ENSMUSG00000065173 ENSMUST00000083239 Gm22127 snRNA Interval_114443 chr4 77309759 77311082 + 0 NA intron (ENSMUSG00000028399.18, intron 6 of 6) protein_coding-intron (ENSMUSG00000028399.18, intron 6 of 14) -351922 ENSMUSG00000092829.1 ENSMUSG00000092829 ENSMUST00000175088 Gm23159 miRNA Interval_99410 chr2 160738331 160738841 + 0 NA intron (ENSMUSG00000016933.17, intron 1 of 1) protein_coding-intron (ENSMUSG00000016933.17, intron 2 of 33) 6887 ENSMUSG00000016933.17 ENSMUSG00000016933 ENSMUST00000143997 Plcg1 protein_coding Interval_128424 chr5 113262014 113262608 + 0 NA intron (ENSMUSG00000042216.13, intron 10 of 12) protein_coding-intron (ENSMUSG00000042216.13, intron 19 of 24) 17025 ENSMUSG00000042216.13 ENSMUSG00000042216 ENSMUST00000140981 Sgsm1 protein_coding Interval_74969 chr17 58503298 58504358 + 0 NA Intergenic Intergenic 41503 ENSMUSG00000117281.1 ENSMUSG00000117281 ENSMUST00000233462 Gm49848 processed_pseudogene Interval_70093 chr17 5278286 5279347 + 0 NA intron (ENSMUSG00000069729.14, intron 6 of 19) protein_coding-intron (ENSMUSG00000069729.14, intron 6 of 18) -109947 ENSMUSG00000101133.1 ENSMUSG00000101133 ENSMUST00000190732 Gm29050 antisense Interval_131544 chr5 137996095 137996298 + 0 NA Intergenic Intergenic -2772 ENSMUSG00000063739.2 ENSMUSG00000063739 ENSMUST00000072718 Gm4963 processed_pseudogene Interval_58285 chr15 31644611 31645128 + 0 NA Intergenic Intergenic 10697 ENSMUSG00000115188.1 ENSMUSG00000115188 ENSMUST00000227734 Gm46522 processed_pseudogene Interval_99575 chr2 163309947 163310315 + 0 NA intron (ENSMUSG00000074607.11, intron 3 of 8) protein_coding-intron (ENSMUSG00000074607.11, intron 3 of 8) 84677 ENSMUSG00000074607.11 ENSMUSG00000074607 ENSMUST00000148599 Tox2 protein_coding Interval_122310 chr5 21149937 21150474 + 0 NA Intergenic Intergenic 19129 ENSMUSG00000106104.1 ENSMUSG00000106104 ENSMUST00000197733 Gm42660 TEC Interval_172700 chrX 43466651 43468288 + 0 NA Intergenic Intergenic 6485 ENSMUSG00000082839.1 ENSMUSG00000082839 ENSMUST00000119895 Gm14588 processed_pseudogene Interval_40814 chr12 108578270 108578491 + 0 NA intron (ENSMUSG00000021262.15, intron 1 of 12) protein_coding-intron (ENSMUSG00000021262.15, intron 1 of 13) -22916 ENSMUSG00000097788.2 ENSMUSG00000097788 ENSMUST00000220796 Gm16596 antisense Interval_169004 chr9 90145825 90146026 + 0 NA Intergenic Intergenic 13879 ENSMUSG00000104263.1 ENSMUSG00000104263 ENSMUST00000192703 9430062P05Rik TEC Interval_96389 chr2 122117714 122118854 + 0 NA promoter-TSS (ENSMUSG00000033396.13) protein_coding-promoter-TSS (ENSMUSG00000033396.13) 91 ENSMUSG00000033396.13 ENSMUSG00000033396 ENSMUST00000135847 Spg11 protein_coding Interval_92866 chr2 67226229 67226610 + 0 NA intron (ENSMUSG00000027022.14, intron 2 of 9) protein_coding-intron (ENSMUSG00000027022.14, intron 2 of 10) -31684 ENSMUSG00000086908.1 ENSMUSG00000086908 ENSMUST00000147939 Gm13598 lincRNA Interval_144913 chr7 28897975 28898970 + 0 NA promoter-TSS (ENSMUSG00000054808.15) protein_coding-promoter-TSS (ENSMUSG00000054808.15) 7520 ENSMUSG00000054083.8 ENSMUSG00000054083 ENSMUST00000208299 Capn12 protein_coding Interval_142501 chr6 142896540 142897436 + 0 NA intron (ENSMUSG00000030283.7, intron 2 of 4) protein_coding-intron (ENSMUSG00000030283.7, intron 2 of 4) 67153 ENSMUSG00000030283.7 ENSMUSG00000030283 ENSMUST00000147058 St8sia1 protein_coding Interval_64887 chr16 17000342 17001492 + 0 NA intron (ENSMUSG00000063358.17, intron 1 of 8) protein_coding-intron (ENSMUSG00000063358.17, intron 1 of 8) 5284 ENSMUSG00000087951.1 ENSMUSG00000087951 ENSMUST00000157326 Gm22558 snRNA Interval_156636 chr8 56146520 56146979 + 0 NA Intergenic Intergenic -129649 ENSMUSG00000109662.1 ENSMUSG00000109662 ENSMUST00000209828 Gm45366 processed_pseudogene Interval_141837 chr6 134838983 134839336 + 0 NA intron (ENSMUSG00000032652.13, intron 1 of 1) protein_coding-intron (ENSMUSG00000032652.13, intron 1 of 4) 3315 ENSMUSG00000108233.1 ENSMUSG00000108233 ENSMUST00000203947 Gm44084 processed_pseudogene Interval_24196 chr11 31169238 31170196 + 0 NA Intergenic Intergenic 12745 ENSMUSG00000091195.1 ENSMUSG00000091195 ENSMUST00000165626 Gm17332 protein_coding Interval_69757 chr16 96063476 96065223 + 0 NA intron (ENSMUSG00000022914.17, intron 8 of 40) protein_coding-intron (ENSMUSG00000022914.17, intron 8 of 41) -3285 ENSMUSG00000022914.17 ENSMUSG00000022914 ENSMUST00000113827 Brwd1 protein_coding Interval_898 chr1 13059411 13060465 + 0 NA promoter-TSS (ENSMUSG00000104518.1) TEC-promoter-TSS (ENSMUSG00000104518.1) 13 ENSMUSG00000104518.1 ENSMUSG00000104518 ENSMUST00000191708 Gm37162 TEC Interval_89663 chr2 24296585 24297561 + 0 NA Intergenic Intergenic 5877 ENSMUSG00000046845.1 ENSMUSG00000046845 ENSMUST00000058056 Il1f10 protein_coding Interval_121360 chr4 155249218 155250839 + 0 NA promoter-TSS (ENSMUSG00000073684.13) protein_coding-promoter-TSS (ENSMUSG00000073684.13) 62 ENSMUSG00000073684.13 ENSMUSG00000073684 ENSMUST00000156404 Faap20 protein_coding Interval_137957 chr6 83726770 83727421 + 0 NA intron (ENSMUSG00000034777.2, intron 1 of 2) protein_coding-intron (ENSMUSG00000034777.2, intron 1 of 2) 5799 ENSMUSG00000087995.1 ENSMUSG00000087995 ENSMUST00000157370 Gm25054 snRNA Interval_112587 chr4 43420050 43422365 + 0 NA intron (ENSMUSG00000035969.15, intron 1 of 2) protein_coding-intron (ENSMUSG00000035969.15, intron 2 of 11) 6511 ENSMUSG00000035969.15 ENSMUSG00000035969 ENSMUST00000123447 Rusc2 protein_coding Interval_96704 chr2 127286828 127287047 + 0 NA intron (ENSMUSG00000027367.16, intron 2 of 6) protein_coding-intron (ENSMUSG00000027367.16, intron 3 of 7) -5174 ENSMUSG00000027367.16 ENSMUSG00000027367 ENSMUST00000154549 Stard7 protein_coding Interval_78957 chr18 22969042 22969628 + 0 NA intron (ENSMUSG00000041923.15, intron 1 of 9) protein_coding-intron (ENSMUSG00000041923.15, intron 1 of 10) 69604 ENSMUSG00000041923.15 ENSMUSG00000041923 ENSMUST00000097652 Nol4 protein_coding Interval_129315 chr5 118990660 118991074 + 0 NA Intergenic Intergenic 6129 ENSMUSG00000107371.1 ENSMUSG00000107371 ENSMUST00000202922 Gm43784 TEC Interval_125790 chr5 74172020 74172250 + 0 NA TTS (ENSMUSG00000106735.1) TEC-TTS (ENSMUSG00000106735.1) 3915 ENSMUSG00000106735.1 ENSMUSG00000106735 ENSMUST00000200757 A330058E17Rik TEC Interval_129552 chr5 120870000 120870872 + 0 NA intron (ENSMUSG00000001168.16, intron 3 of 3) protein_coding-intron (ENSMUSG00000001168.16, intron 3 of 5) 8998 ENSMUSG00000001168.16 ENSMUSG00000001168 ENSMUST00000171820 Oas1h protein_coding Interval_80974 chr18 51889051 51889669 + 0 NA Intergenic Intergenic -23479 ENSMUSG00000069379.3 ENSMUSG00000069379 ENSMUST00000091905 Gm4950 processed_pseudogene Interval_53300 chr14 55872274 55874624 + 0 NA exon (ENSMUSG00000075592.10, exon 9 of 9) protein_coding-exon (ENSMUSG00000075592.10, exon 9 of 9) 10783 ENSMUSG00000040380.14 ENSMUSG00000040380 ENSMUST00000172378 Cbln3 protein_coding Interval_136297 chr6 52713520 52714614 + 0 NA promoter-TSS (ENSMUSG00000004535.12) protein_coding-promoter-TSS (ENSMUSG00000004535.12) -112 ENSMUSG00000108170.1 ENSMUSG00000108170 ENSMUST00000203301 Gm43966 TEC Interval_10432 chr1 170830526 170830778 + 0 NA intron (ENSMUSG00000026663.6, intron 7 of 15) protein_coding-intron (ENSMUSG00000026663.6, intron 7 of 15) 2219 ENSMUSG00000096547.1 ENSMUSG00000096547 ENSMUST00000179933 Gm25235 snRNA Interval_71663 chr17 25221636 25223482 + 0 NA promoter-TSS (ENSMUSG00000015127.14) protein_coding-promoter-TSS (ENSMUSG00000015127.14) 11874 ENSMUSG00000015127.14 ENSMUSG00000015127 ENSMUST00000161679 Unkl protein_coding Interval_51710 chr14 31554948 31555677 + 0 NA intron (ENSMUSG00000115022.1, intron 14 of 15) protein_coding-intron (ENSMUSG00000057606.14, intron 1 of 16) 2828 ENSMUSG00000057606.14 ENSMUSG00000057606 ENSMUST00000129238 Colq protein_coding Interval_71081 chr17 17766536 17767427 + 0 NA Intergenic Intergenic -16151 ENSMUSG00000084605.1 ENSMUSG00000084605 ENSMUST00000122656 Gm23837 misc_RNA Interval_114052 chr4 62761509 62761869 + 0 NA Intergenic Intergenic -34152 ENSMUSG00000086139.1 ENSMUSG00000086139 ENSMUST00000143618 Gm11211 lincRNA Interval_5007 chr1 84153592 84154858 + 0 NA intron (ENSMUSG00000045658.16, intron 4 of 4) protein_coding-intron (ENSMUSG00000045658.16, intron 2 of 2) -13963 ENSMUSG00000101934.1 ENSMUSG00000101934 ENSMUST00000189162 Gm18304 processed_pseudogene Interval_132996 chr5 149165180 149166003 + 0 NA intron (ENSMUSG00000097191.2, intron 2 of 3) lincRNA-intron (ENSMUSG00000097191.2, intron 2 of 3) -9572 ENSMUSG00000024437.6 ENSMUSG00000024437 ENSMUST00000025307 Gm8615 transcribed_processed_pseudogene Interval_114158 chr4 65297150 65297374 + 0 NA exon (ENSMUSG00000028370.7, exon 13 of 22) protein_coding-exon (ENSMUSG00000028370.7, exon 13 of 22) 173088 ENSMUSG00000028370.7 ENSMUSG00000028370 ENSMUST00000084501 Pappa protein_coding Interval_45761 chr13 57829848 57830858 + 0 NA intron (ENSMUSG00000056222.15, intron 2 of 10) protein_coding-intron (ENSMUSG00000056222.15, intron 1 of 9) 77979 ENSMUSG00000056222.15 ENSMUSG00000056222 ENSMUST00000185905 Spock1 protein_coding Interval_33471 chr11 116711718 116713933 + 0 NA Intergenic Intergenic -18216 ENSMUSG00000057286.6 ENSMUSG00000057286 ENSMUST00000145441 St6galnac2 protein_coding Interval_153569 chr8 3461171 3461443 + 0 NA intron (ENSMUSG00000069633.12, intron 2 of 4) protein_coding-intron (ENSMUSG00000069633.12, intron 3 of 4) 3268 ENSMUSG00000108955.1 ENSMUSG00000108955 ENSMUST00000207266 Gm44775 TEC Interval_95936 chr2 118548344 118550154 + 0 NA intron (ENSMUSG00000040093.16, intron 1 of 3) protein_coding-intron (ENSMUSG00000040093.16, intron 1 of 4) -3933 ENSMUSG00000040093.16 ENSMUSG00000040093 ENSMUST00000138342 Bmf protein_coding Interval_152211 chr7 130671019 130672263 + 0 NA intron (ENSMUSG00000030852.18, intron 2 of 3) protein_coding-intron (ENSMUSG00000030852.18, intron 3 of 20) -17249 ENSMUSG00000109225.1 ENSMUSG00000109225 ENSMUST00000207466 4930513N20Rik TEC Interval_72262 chr17 28869898 28870675 + 0 NA intron (ENSMUSG00000043286.12, intron 1 of 6) protein_coding-intron (ENSMUSG00000043286.12, intron 1 of 9) -10778 ENSMUSG00000087615.2 ENSMUSG00000087615 ENSMUST00000146779 Pnpla1os antisense Interval_24253 chr11 31809471 31810682 + 0 NA intron (ENSMUSG00000085772.7, intron 1 of 4) lincRNA-intron (ENSMUSG00000085772.7, intron 1 of 3) 14448 ENSMUSG00000085772.7 ENSMUSG00000085772 ENSMUST00000126265 D630024D03Rik lincRNA Interval_60016 chr15 63975098 63976195 + 0 NA intron (ENSMUSG00000022378.14, intron 1 of 11) protein_coding-intron (ENSMUSG00000022378.14, intron 1 of 11) -50302 ENSMUSG00000065936.1 ENSMUSG00000065936 ENSMUST00000084002 Gm25628 snRNA Interval_35142 chr12 17544152 17545548 + 0 NA promoter-TSS (ENSMUSG00000011179.8) protein_coding-promoter-TSS (ENSMUSG00000011179.8) -122 ENSMUSG00000011179.8 ENSMUSG00000011179 ENSMUST00000222250 Odc1 protein_coding Interval_30345 chr11 93746595 93747001 + 0 NA Intergenic Intergenic 51716 ENSMUSG00000080872.1 ENSMUSG00000080872 ENSMUST00000122414 Gm11506 processed_pseudogene Interval_109128 chr3 136013410 136013960 + 0 NA intron (ENSMUSG00000104710.1, intron 1 of 3) antisense-intron (ENSMUSG00000104710.1, intron 1 of 3) 38003 ENSMUSG00000105244.1 ENSMUSG00000105244 ENSMUST00000197542 Gm5281 processed_pseudogene Interval_57000 chr15 3960162 3961385 + 0 NA Intergenic Intergenic 12087 ENSMUSG00000022184.8 ENSMUSG00000022184 ENSMUST00000148169 Fbxo4 protein_coding Interval_7039 chr1 123302350 123302924 + 0 NA Intergenic Intergenic 15063 ENSMUSG00000101495.1 ENSMUSG00000101495 ENSMUST00000189001 Gm28912 processed_pseudogene Interval_153502 chr7 145267071 145267490 + 0 NA intron (ENSMUSG00000048677.9, intron 11 of 24) protein_coding-intron (ENSMUSG00000048677.9, intron 11 of 24) 16642 ENSMUSG00000048677.9 ENSMUSG00000048677 ENSMUST00000209156 Tpcn2 protein_coding Interval_24775 chr11 37304309 37304530 + 0 NA Intergenic Intergenic -354570 ENSMUSG00000087388.1 ENSMUSG00000087388 ENSMUST00000131013 Gm12128 lincRNA Interval_83191 chr18 82668351 82669910 + 0 NA intron (ENSMUSG00000041258.18, intron 5 of 31) protein_coding-intron (ENSMUSG00000041258.18, intron 5 of 29) 14438 ENSMUSG00000041258.18 ENSMUSG00000041258 ENSMUST00000225002 Zfp236 protein_coding Interval_83053 chr18 80830143 80831015 + 0 NA intron (ENSMUSG00000114891.1, intron 2 of 2) protein_coding-intron (ENSMUSG00000024566.10, intron 11 of 29) 8332 ENSMUSG00000114891.1 ENSMUSG00000114891 ENSMUST00000225900 Gm47272 antisense Interval_45699 chr13 57042681 57043794 + 0 NA Intergenic Intergenic -112289 ENSMUSG00000077279.1 ENSMUSG00000077279 ENSMUST00000104091 Gm22777 snoRNA Interval_170624 chr9 109598244 109598603 + 0 NA Intergenic Intergenic -24199 ENSMUSG00000106495.1 ENSMUSG00000106495 ENSMUST00000198533 Gm42755 TEC Interval_173232 chrX 74632716 74633562 + 0 NA Intergenic Intergenic 8713 ENSMUSG00000077462.1 ENSMUSG00000077462 ENSMUST00000104274 Gm26417 snoRNA Interval_157781 chr8 73131719 73132134 + 0 NA exon (ENSMUSG00000004383.18, exon 3 of 15) protein_coding-exon (ENSMUSG00000004383.18, exon 3 of 15) 43332 ENSMUSG00000089447.1 ENSMUSG00000089447 ENSMUST00000158822 Gm22532 snoRNA Interval_164644 chr9 40268535 40270116 + 0 NA promoter-TSS (ENSMUSG00000049281.16) protein_coding-promoter-TSS (ENSMUSG00000049281.16) 7207 ENSMUSG00000111509.1 ENSMUSG00000111509 ENSMUST00000215330 Gm47266 TEC Interval_8340 chr1 137479485 137480312 + 0 NA Intergenic Intergenic 51332 ENSMUSG00000103070.1 ENSMUSG00000103070 ENSMUST00000192122 Gm37903 TEC Interval_67104 chr16 43114049 43114656 + 0 NA intron (ENSMUSG00000022708.16, intron 4 of 8) protein_coding-intron (ENSMUSG00000022708.16, intron 4 of 14) -11881 ENSMUSG00000094605.1 ENSMUSG00000094605 ENSMUST00000180317 Gm25873 snRNA Interval_33017 chr11 113694602 113694883 + 0 NA TTS (ENSMUSG00000041623.17) protein_coding-TTS (ENSMUSG00000041623.17) 9656 ENSMUSG00000041623.17 ENSMUSG00000041623 ENSMUST00000153732 D11Wsu47e protein_coding Interval_88571 chr2 6256185 6256901 + 0 NA exon (ENSMUSG00000087485.1, exon 2 of 2) lincRNA-exon (ENSMUSG00000087485.1, exon 2 of 2) 723 ENSMUSG00000087485.1 ENSMUSG00000087485 ENSMUST00000131190 Gm13383 lincRNA Interval_44916 chr13 49734652 49735237 + 0 NA TTS (ENSMUSG00000037851.13) protein_coding-TTS (ENSMUSG00000037851.13) -15521 ENSMUSG00000118398.1 ENSMUSG00000118398 ENSMUST00000238441 Gm19334 processed_pseudogene Interval_62887 chr15 97743244 97743448 + 0 NA Intergenic Intergenic -17062 ENSMUSG00000086601.1 ENSMUSG00000086601 ENSMUST00000149373 Rapgef3os1 antisense Interval_35182 chr12 17851761 17853088 + 0 NA Intergenic Intergenic -29773 ENSMUSG00000113294.1 ENSMUSG00000113294 ENSMUST00000223226 Gm49326 unprocessed_pseudogene Interval_53741 chr14 61344128 61345205 + 0 NA exon (ENSMUSG00000021928.9, exon 2 of 2) protein_coding-exon (ENSMUSG00000021928.9, exon 2 of 2) -1599 ENSMUSG00000089253.1 ENSMUSG00000089253 ENSMUST00000158628 Gm25716 snRNA Interval_86775 chr19 43795236 43796003 + 0 NA intron (ENSMUSG00000025194.5, intron 2 of 31) protein_coding-intron (ENSMUSG00000025194.5, intron 2 of 31) -14903 ENSMUSG00000025194.5 ENSMUSG00000025194 ENSMUST00000099413 Abcc2 protein_coding Interval_166687 chr9 61914163 61915102 + 0 NA promoter-TSS (ENSMUSG00000007892.8) protein_coding-promoter-TSS (ENSMUSG00000007892.8) -90 ENSMUSG00000007892.8 ENSMUSG00000007892 ENSMUST00000008036 Rplp1 protein_coding Interval_144004 chr7 18909980 18911036 + 0 NA promoter-TSS (ENSMUSG00000074358.9) protein_coding-promoter-TSS (ENSMUSG00000074358.9) -15380 ENSMUSG00000030411.16 ENSMUSG00000030411 ENSMUST00000220302 Nova2 protein_coding Interval_52308 chr14 44538471 44538952 + 0 NA Intergenic Intergenic -3352 ENSMUSG00000072574.4 ENSMUSG00000072574 ENSMUST00000111864 Gm17184 transcribed_unprocessed_pseudogene Interval_110275 chr3 155412127 155412496 + 0 NA Intergenic Intergenic -102130 ENSMUSG00000103295.1 ENSMUSG00000103295 ENSMUST00000193152 Scp2-ps1 unprocessed_pseudogene Interval_174641 chrX 161907581 161909539 + 0 NA intron (ENSMUSG00000087571.1, intron 1 of 1) protein_coding-intron (ENSMUSG00000059493.13, intron 1 of 7) 337 ENSMUSG00000087571.1 ENSMUSG00000087571 ENSMUST00000154188 Gm15202 antisense Interval_43234 chr13 26245182 26246214 + 0 NA Intergenic Intergenic 50997 ENSMUSG00000084358.1 ENSMUSG00000084358 ENSMUST00000119264 Gm11352 processed_pseudogene Interval_7778 chr1 133621677 133622681 + 0 NA exon (ENSMUSG00000116275.1, exon 16 of 17) protein_coding-exon (ENSMUSG00000116275.1, exon 16 of 17) -12132 ENSMUSG00000090553.8 ENSMUSG00000090553 ENSMUST00000164574 Snrpe protein_coding Interval_95274 chr2 105467785 105469367 + 0 NA Intergenic Intergenic -7925 ENSMUSG00000086764.1 ENSMUSG00000086764 ENSMUST00000130677 4930527A07Rik lincRNA Interval_29290 chr11 82728403 82728604 + 0 NA exon (ENSMUSG00000083371.1, exon 1 of 1) processed_pseudogene-exon (ENSMUSG00000083371.1, exon 1 of 1) 503 ENSMUSG00000083371.1 ENSMUSG00000083371 ENSMUST00000118925 Gm11422 processed_pseudogene Interval_89042 chr2 14973913 14974126 + 0 NA intron (ENSMUSG00000057914.15, intron 8 of 12) protein_coding-intron (ENSMUSG00000057914.15, intron 8 of 12) 7821 ENSMUSG00000104271.1 ENSMUSG00000104271 ENSMUST00000195585 Gm37891 TEC Interval_62332 chr15 90238913 90239136 + 0 NA Intergenic Intergenic 14664 ENSMUSG00000099319.1 ENSMUSG00000099319 ENSMUST00000183650 Mir7648 miRNA Interval_131301 chr5 136258080 136259287 + 0 NA intron (ENSMUSG00000029705.17, intron 14 of 20) protein_coding-intron (ENSMUSG00000029705.17, intron 13 of 20) -16313 ENSMUSG00000086220.1 ENSMUSG00000086220 ENSMUST00000148082 Gm16599 antisense Interval_35355 chr12 20989899 20991419 + 0 NA exon (ENSMUSG00000052632.16, exon 1 of 10) protein_coding-exon (ENSMUSG00000052632.16, exon 1 of 10) 121 ENSMUSG00000090370.4 ENSMUSG00000090370 ENSMUST00000232105 Gm21989 processed_transcript Interval_135849 chr6 47920210 47921568 + 0 NA intron (ENSMUSG00000052763.7, intron 1 of 4) protein_coding-intron (ENSMUSG00000052763.7, intron 1 of 4) -5417 ENSMUSG00000052763.7 ENSMUSG00000052763 ENSMUST00000156500 Zfp212 protein_coding Interval_77581 chr17 92337725 92337977 + 0 NA Intergenic Intergenic 35265 ENSMUSG00000117624.1 ENSMUSG00000117624 ENSMUST00000234379 Gm6751 processed_pseudogene Interval_145672 chr7 37192634 37193285 + 0 NA Intergenic Intergenic 52418 ENSMUSG00000100905.1 ENSMUSG00000100905 ENSMUST00000189179 Gm28075 lincRNA Interval_74867 chr17 56972999 56974866 + 0 NA intron (ENSMUSG00000045019.4, intron 1 of 5) protein_coding-intron (ENSMUSG00000045019.4, intron 1 of 5) 8194 ENSMUSG00000045019.4 ENSMUSG00000045019 ENSMUST00000056113 Acer1 protein_coding Interval_132840 chr5 148259061 148259741 + 0 NA intron (ENSMUSG00000029651.16, intron 7 of 14) protein_coding-intron (ENSMUSG00000029651.16, intron 7 of 14) 23409 ENSMUSG00000029651.16 ENSMUSG00000029651 ENSMUST00000085554 Mtus2 protein_coding Interval_109122 chr3 135941370 135941697 + 0 NA intron (ENSMUSG00000104710.1, intron 1 of 3) antisense-intron (ENSMUSG00000104710.1, intron 1 of 3) 13301 ENSMUSG00000104710.1 ENSMUSG00000104710 ENSMUST00000198354 Gm31243 antisense Interval_75071 chr17 62884053 62884369 + 0 NA Intergenic Intergenic -3067 ENSMUSG00000048915.12 ENSMUSG00000048915 ENSMUST00000078839 Efna5 protein_coding Interval_96382 chr2 122078943 122079230 + 0 NA intron (ENSMUSG00000033396.13, intron 21 of 39) protein_coding-intron (ENSMUSG00000033396.13, intron 21 of 39) 39289 ENSMUSG00000033396.13 ENSMUSG00000033396 ENSMUST00000135847 Spg11 protein_coding Interval_116330 chr4 109887240 109887451 + 0 NA intron (ENSMUSG00000010517.7, intron 4 of 5) protein_coding-intron (ENSMUSG00000010517.7, intron 14 of 18) 46560 ENSMUSG00000010517.7 ENSMUSG00000010517 ENSMUST00000155204 Faf1 protein_coding Interval_173175 chrX 73815045 73815575 + 0 NA intron (ENSMUSG00000002006.12, intron 1 of 7) protein_coding-intron (ENSMUSG00000002006.12, intron 1 of 7) 5893 ENSMUSG00000064536.1 ENSMUSG00000064536 ENSMUST00000082602 Gm23615 snoRNA Interval_59233 chr15 49242730 49243237 + 0 NA Intergenic Intergenic 48646 ENSMUSG00000115775.1 ENSMUSG00000115775 ENSMUST00000228245 Gm41318 lincRNA Interval_158467 chr8 83893880 83894188 + 0 NA Intergenic Intergenic -6701 ENSMUSG00000013033.16 ENSMUSG00000013033 ENSMUST00000131018 Adgrl1 protein_coding Interval_28135 chr11 73084410 73085588 + 0 NA exon (ENSMUSG00000020783.14, exon 13 of 13) protein_coding-exon (ENSMUSG00000020783.14, exon 13 of 13) -5584 ENSMUSG00000005947.11 ENSMUSG00000005947 ENSMUST00000006101 Itgae protein_coding Interval_83558 chr18 89445987 89446163 + 0 NA intron (ENSMUSG00000073514.4, intron 5 of 7) protein_coding-intron (ENSMUSG00000073514.4, intron 5 of 7) -66458 ENSMUSG00000118274.1 ENSMUSG00000118274 ENSMUST00000236207 Gm50204 processed_pseudogene Interval_2865 chr1 46921410 46922740 + 0 NA Intergenic Intergenic -25196 ENSMUSG00000100160.1 ENSMUSG00000100160 ENSMUST00000185210 Gm28527 processed_pseudogene Interval_9338 chr1 156402665 156404052 + 0 NA promoter-TSS (ENSMUSG00000026601.14) protein_coding-promoter-TSS (ENSMUSG00000026601.14) 17070 ENSMUSG00000026601.14 ENSMUSG00000026601 ENSMUST00000179744 Axdnd1 protein_coding Interval_157341 chr8 69668602 69669568 + 0 NA Intergenic Intergenic 14593 ENSMUSG00000091764.3 ENSMUSG00000091764 ENSMUST00000169125 Zfp964 protein_coding Interval_32331 chr11 107012018 107013346 + 0 NA Intergenic Intergenic -7942 ENSMUSG00000083356.1 ENSMUSG00000083356 ENSMUST00000119530 Gm11708 processed_pseudogene Interval_92151 chr2 54309405 54309653 + 0 NA Intergenic Intergenic 25414 ENSMUSG00000080742.1 ENSMUSG00000080742 ENSMUST00000117596 Gm14035 processed_pseudogene Interval_30900 chr11 97146465 97146977 + 0 NA promoter-TSS (ENSMUSG00000099286.1) miRNA-promoter-TSS (ENSMUSG00000099286.1) -302 ENSMUSG00000099286.1 ENSMUSG00000099286 ENSMUST00000183796 Mir7235 miRNA Interval_11003 chr1 177991202 177991557 + 0 NA promoter-TSS (ENSMUSG00000091476.8) protein_coding-promoter-TSS (ENSMUSG00000091476.8) -57 ENSMUSG00000091476.8 ENSMUSG00000091476 ENSMUST00000239155 Catspere2 protein_coding Interval_166326 chr9 58350065 58350317 + 0 NA Intergenic Intergenic 20178 ENSMUSG00000036244.5 ENSMUSG00000036244 ENSMUST00000213847 Tbc1d21 protein_coding Interval_31001 chr11 97655963 97657110 + 0 NA intron (ENSMUSG00000085586.1, intron 1 of 3) processed_transcript-intron (ENSMUSG00000085586.1, intron 1 of 3) 3791 ENSMUSG00000093004.1 ENSMUSG00000093004 ENSMUST00000175263 Gm24158 miRNA Interval_59122 chr15 44370471 44370681 + 0 NA Intergenic Intergenic 6491 ENSMUSG00000077181.1 ENSMUSG00000077181 ENSMUST00000103993 Gm25093 snoRNA Interval_92543 chr2 60441789 60442318 + 0 NA intron (ENSMUSG00000054580.14, intron 1 of 1) protein_coding-intron (ENSMUSG00000054580.14, intron 19 of 29) 30528 ENSMUSG00000087283.1 ENSMUSG00000087283 ENSMUST00000131457 Gm13580 antisense Interval_27632 chr11 69156596 69157435 + 0 NA promoter-TSS (ENSMUSG00000032807.5) protein_coding-promoter-TSS (ENSMUSG00000032807.5) 26 ENSMUSG00000032807.5 ENSMUSG00000032807 ENSMUST00000036424 Alox12b protein_coding Interval_154988 chr8 25518617 25519821 + 0 NA promoter-TSS (ENSMUSG00000031565.18) protein_coding-promoter-TSS (ENSMUSG00000031565.18) -31634 ENSMUSG00000110063.1 ENSMUSG00000110063 ENSMUST00000211266 Gm31045 lincRNA Interval_119323 chr4 136867375 136867681 + 0 NA Intergenic Intergenic 18659 ENSMUSG00000036905.8 ENSMUSG00000036905 ENSMUST00000046384 C1qb protein_coding Interval_165190 chr9 45126357 45127275 + 0 NA exon (ENSMUSG00000070304.12, exon 4 of 4) protein_coding-exon (ENSMUSG00000070304.12, exon 4 of 4) 8016 ENSMUSG00000074385.3 ENSMUSG00000074385 ENSMUST00000217151 Gm10684 lincRNA Interval_174758 chrX 165634214 165634991 + 0 NA Intergenic Intergenic -45602 ENSMUSG00000082134.1 ENSMUSG00000082134 ENSMUST00000117309 Gm15236 processed_pseudogene Interval_73455 chr17 37421792 37422405 + 0 NA Intergenic Intergenic -6975 ENSMUSG00000092477.1 ENSMUSG00000092477 ENSMUST00000173316 Gm18808 unprocessed_pseudogene Interval_18176 chr10 83326671 83327357 + 0 NA intron (ENSMUSG00000034591.5, intron 1 of 10) protein_coding-intron (ENSMUSG00000034591.5, intron 1 of 10) -4131 ENSMUSG00000034591.5 ENSMUSG00000034591 ENSMUST00000154730 Slc41a2 protein_coding Interval_73249 chr17 35774108 35774704 + 0 NA intron (ENSMUSG00000092171.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000092171.1, intron 1 of 2) 1956 ENSMUSG00000092171.1 ENSMUSG00000092171 ENSMUST00000172874 4833427F10Rik lincRNA Interval_161599 chr8 121483826 121485154 + 0 NA intron (ENSMUSG00000092329.1, intron 1 of 15) protein_coding-intron (ENSMUSG00000092329.1, intron 1 of 15) 49510 ENSMUSG00000097438.1 ENSMUSG00000097438 ENSMUST00000181666 Gm26784 lincRNA Interval_34164 chr11 121017556 121018455 + 0 NA Intergenic Intergenic -11397 ENSMUSG00000086835.2 ENSMUSG00000086835 ENSMUST00000136500 Gm11775 antisense Interval_27630 chr11 69141451 69142662 + 0 NA intron (ENSMUSG00000020892.10, intron 2 of 3) protein_coding-intron (ENSMUSG00000020892.10, intron 12 of 14) 7914 ENSMUSG00000020892.10 ENSMUSG00000020892 ENSMUST00000139257 Aloxe3 protein_coding Interval_100923 chr2 173355869 173357785 + 0 NA Intergenic Intergenic -37739 ENSMUSG00000086114.1 ENSMUSG00000086114 ENSMUST00000147357 Gm14642 lincRNA Interval_154091 chr8 12615059 12616650 + 0 NA intron (ENSMUSG00000000759.14, intron 7 of 7) protein_coding-intron (ENSMUSG00000000759.14, intron 21 of 21) -42534 ENSMUSG00000097421.2 ENSMUSG00000097421 ENSMUST00000180858 D630011A20Rik bidirectional_promoter_lncRNA Interval_2877 chr1 47149041 47149996 + 0 NA Intergenic Intergenic -3943 ENSMUSG00000101447.1 ENSMUSG00000101447 ENSMUST00000190006 Gm28826 lincRNA Interval_111054 chr4 11526171 11526514 + 0 NA intron (ENSMUSG00000040720.15, intron 12 of 24) protein_coding-intron (ENSMUSG00000040720.15, intron 11 of 12) -23503 ENSMUSG00000086625.1 ENSMUSG00000086625 ENSMUST00000141538 Gm11831 antisense Interval_47192 chr13 77666553 77666758 + 0 NA Intergenic Intergenic 3820 ENSMUSG00000114809.1 ENSMUSG00000114809 ENSMUST00000223639 Atp5c1-ps processed_pseudogene Interval_52312 chr14 44710067 44711253 + 0 NA Intergenic Intergenic -4209 ENSMUSG00000079265.10 ENSMUSG00000079265 ENSMUST00000227585 Gm8257 protein_coding Interval_157563 chr8 71451412 71452153 + 0 NA Intergenic Intergenic 11840 ENSMUSG00000007950.9 ENSMUSG00000007950 ENSMUST00000212503 Abhd8 protein_coding Interval_130492 chr5 128347574 128349088 + 0 NA intron (ENSMUSG00000034310.8, intron 1 of 8) protein_coding-intron (ENSMUSG00000034310.8, intron 1 of 8) 11554 ENSMUSG00000105857.1 ENSMUSG00000105857 ENSMUST00000198962 Gm42817 antisense Interval_141149 chr6 125266271 125266511 + 0 NA intron (ENSMUSG00000108129.2, intron 1 of 3) processed_transcript-intron (ENSMUSG00000108129.2, intron 1 of 3) 772 ENSMUSG00000108129.2 ENSMUSG00000108129 ENSMUST00000205000 4930417O13Rik processed_transcript Interval_80984 chr18 52266375 52266596 + 0 NA Intergenic Intergenic -65064 ENSMUSG00000024510.6 ENSMUSG00000024510 ENSMUST00000025388 Ftmt protein_coding Interval_131610 chr5 138772846 138773840 + 0 NA intron (ENSMUSG00000025854.15, intron 4 of 10) protein_coding-intron (ENSMUSG00000025854.15, intron 3 of 9) 18256 ENSMUSG00000025854.15 ENSMUSG00000025854 ENSMUST00000161641 Fam20c protein_coding Interval_65806 chr16 28982773 28983502 + 0 NA Intergenic Intergenic -31782 ENSMUSG00000116861.1 ENSMUSG00000116861 ENSMUST00000232466 Gm8253 processed_pseudogene Interval_94619 chr2 92710426 92712585 + 0 NA Intergenic Intergenic -30725 ENSMUSG00000085976.1 ENSMUSG00000085976 ENSMUST00000152230 Gm13816 lincRNA Interval_59100 chr15 43772559 43772986 + 0 NA Intergenic Intergenic -35689 ENSMUSG00000115407.1 ENSMUSG00000115407 ENSMUST00000226778 Gm2140 processed_pseudogene Interval_137036 chr6 66876706 66878226 + 0 NA Intergenic Intergenic -1723 ENSMUSG00000107176.1 ENSMUSG00000107176 ENSMUST00000202370 Gm9794 processed_pseudogene Interval_44572 chr13 46267134 46268807 + 0 NA Intergenic Intergenic -5751 ENSMUSG00000063529.3 ENSMUSG00000063529 ENSMUST00000076622 Stmnd1 protein_coding Interval_14334 chr10 30980229 30980601 + 0 NA Intergenic Intergenic -37930 ENSMUSG00000094008.1 ENSMUSG00000094008 ENSMUST00000178825 Gm24168 snRNA Interval_50039 chr13 119894942 119895181 + 0 NA promoter-TSS (ENSMUSG00000096284.2) protein_coding-promoter-TSS (ENSMUSG00000096284.2) -276 ENSMUSG00000096284.2 ENSMUSG00000096284 ENSMUST00000178510 Tcstv1 protein_coding Interval_160947 chr8 115967002 115967269 + 0 NA Intergenic Intergenic 4936 ENSMUSG00000110620.1 ENSMUSG00000110620 ENSMUST00000212988 Gm45733 lincRNA Interval_133912 chr6 15352009 15352329 + 0 NA intron (ENSMUSG00000029563.16, intron 3 of 9) protein_coding-intron (ENSMUSG00000029563.16, intron 3 of 16) -52812 ENSMUSG00000093317.1 ENSMUSG00000093317 ENSMUST00000175576 Gm25470 miRNA Interval_22788 chr11 15525852 15526251 + 0 NA Intergenic Intergenic 43745 ENSMUSG00000083292.1 ENSMUSG00000083292 ENSMUST00000122400 Gm12010 processed_pseudogene Interval_56466 chr14 118945667 118946071 + 0 NA intron (ENSMUSG00000022136.8, intron 1 of 11) protein_coding-intron (ENSMUSG00000022136.8, intron 1 of 11) 7893 ENSMUSG00000022136.8 ENSMUSG00000022136 ENSMUST00000022734 Dnajc3 protein_coding Interval_137646 chr6 77572214 77572839 + 0 NA intron (ENSMUSG00000063063.12, intron 8 of 18) protein_coding-intron (ENSMUSG00000063063.12, intron 7 of 17) 15955 ENSMUSG00000107707.1 ENSMUSG00000107707 ENSMUST00000204098 Gm44286 TEC Interval_85620 chr19 29106861 29107381 + 0 NA intron (ENSMUSG00000024785.7, intron 1 of 8) protein_coding-intron (ENSMUSG00000024785.7, intron 1 of 8) 5746 ENSMUSG00000024785.7 ENSMUSG00000024785 ENSMUST00000235900 Rcl1 protein_coding Interval_41492 chr12 115082007 115082391 + 0 NA Intergenic Intergenic -14197 ENSMUSG00000102364.1 ENSMUSG00000102364 ENSMUST00000194257 Ighv8-5 IG_V_gene Interval_144580 chr7 26386349 26387606 + 0 NA intron (ENSMUSG00000040614.14, intron 1 of 4) protein_coding-intron (ENSMUSG00000040614.14, intron 1 of 4) 16723 ENSMUSG00000040614.14 ENSMUSG00000040614 ENSMUST00000160277 Nlrp9c protein_coding Interval_172649 chrX 39805461 39806059 + 0 NA Intergenic Intergenic 9176 ENSMUSG00000083845.1 ENSMUSG00000083845 ENSMUST00000118292 Gm14571 processed_pseudogene Interval_5407 chr1 88574768 88576357 + 0 NA Intergenic Intergenic 24045 ENSMUSG00000100798.1 ENSMUSG00000100798 ENSMUST00000189394 Gm19589 lincRNA Interval_121113 chr4 153201090 153201501 + 0 NA Intergenic Intergenic -16881 ENSMUSG00000087454.1 ENSMUSG00000087454 ENSMUST00000126141 Gm13174 lincRNA Interval_47301 chr13 80884801 80886625 + 0 NA promoter-TSS (ENSMUSG00000089827.1) processed_transcript-promoter-TSS (ENSMUSG00000089827.1) -189 ENSMUSG00000089827.1 ENSMUSG00000089827 ENSMUST00000161006 1700023H06Rik processed_transcript Interval_25883 chr11 52324433 52325372 + 0 NA Intergenic Intergenic 48847 ENSMUSG00000086395.1 ENSMUSG00000086395 ENSMUST00000150973 A630014C17Rik antisense Interval_136782 chr6 60201380 60201793 + 0 NA Intergenic Intergenic -49206 ENSMUSG00000064515.1 ENSMUSG00000064515 ENSMUST00000082581 n-R5s162 rRNA Interval_35519 chr12 24246245 24246466 + 0 NA Intergenic Intergenic 5826 ENSMUSG00000112975.1 ENSMUSG00000112975 ENSMUST00000169148 Gm21297 processed_pseudogene Interval_151052 chr7 118205826 118206065 + 0 NA exon (ENSMUSG00000030655.15, exon 6 of 6) protein_coding-exon (ENSMUSG00000030655.15, exon 6 of 6) -13654 ENSMUSG00000030655.15 ENSMUSG00000030655 ENSMUST00000179847 Smg1 protein_coding Interval_42757 chr13 19112775 19112987 + 0 NA intron (ENSMUSG00000021314.13, intron 11 of 20) protein_coding-intron (ENSMUSG00000021314.13, intron 11 of 20) -41306 ENSMUSG00000113378.1 ENSMUSG00000113378 ENSMUST00000220695 Gm47660 processed_pseudogene Interval_13918 chr10 24627393 24627890 + 0 NA Intergenic Intergenic 31915 ENSMUSG00000019997.11 ENSMUSG00000019997 ENSMUST00000129142 Ccn2 protein_coding Interval_46919 chr13 73400055 73400336 + 0 NA Intergenic Intergenic -52811 ENSMUSG00000113346.2 ENSMUSG00000113346 ENSMUST00000223470 Eprn lincRNA Interval_164221 chr9 32744284 32744925 + 0 NA intron (ENSMUSG00000032035.16, intron 8 of 9) protein_coding-intron (ENSMUSG00000032035.16, intron 6 of 7) -33433 ENSMUSG00000098843.1 ENSMUSG00000098843 ENSMUST00000183616 Gm27240 antisense Interval_3401 chr1 57984434 57985427 + 0 NA intron (ENSMUSG00000054770.16, intron 4 of 9) protein_coding-intron (ENSMUSG00000054770.16, intron 4 of 9) -21949 ENSMUSG00000054770.16 ENSMUSG00000054770 ENSMUST00000160130 Kctd18 protein_coding Interval_84500 chr19 11928092 11928541 + 0 NA intron (ENSMUSG00000046139.8, intron 10 of 19) protein_coding-intron (ENSMUSG00000046139.8, intron 9 of 18) 4588 ENSMUSG00000104979.1 ENSMUSG00000104979 ENSMUST00000198985 Mir6994 miRNA Interval_139740 chr6 108263246 108263418 + 0 NA intron (ENSMUSG00000030102.11, intron 1 of 22) protein_coding-intron (ENSMUSG00000030102.11, intron 4 of 61) -77776 ENSMUSG00000030101.15 ENSMUSG00000030101 ENSMUST00000171697 Sumf1 protein_coding Interval_48921 chr13 104856797 104857103 + 0 NA intron (ENSMUSG00000042655.5, intron 1 of 1) protein_coding-intron (ENSMUSG00000042655.5, intron 2 of 2) 6469 ENSMUSG00000042655.5 ENSMUSG00000042655 ENSMUST00000225969 Shisal2b protein_coding Interval_16896 chr10 69594248 69595081 + 0 NA intron (ENSMUSG00000069601.14, intron 1 of 17) protein_coding-intron (ENSMUSG00000069601.14, intron 1 of 16) -28303 ENSMUSG00000112729.1 ENSMUSG00000112729 ENSMUST00000220152 Gm46231 processed_pseudogene Interval_66458 chr16 33990501 33991565 + 0 NA intron (ENSMUSG00000061751.16, intron 20 of 26) protein_coding-intron (ENSMUSG00000061751.16, intron 53 of 59) 16424 ENSMUSG00000116835.1 ENSMUSG00000116835 ENSMUST00000231993 Gm49594 processed_pseudogene Interval_56709 chr14 121545390 121545707 + 0 NA intron (ENSMUSG00000025558.19, intron 54 of 55) protein_coding-intron (ENSMUSG00000025558.19, intron 53 of 53) 22004 ENSMUSG00000115408.1 ENSMUSG00000115408 ENSMUST00000226518 Gm4529 processed_pseudogene Interval_44822 chr13 48924046 48924327 + 0 NA intron (ENSMUSG00000038014.7, intron 5 of 17) protein_coding-intron (ENSMUSG00000038014.7, intron 5 of 17) 43831 ENSMUSG00000038014.7 ENSMUSG00000038014 ENSMUST00000060805 Fam120a protein_coding Interval_166557 chr9 60870914 60871992 + 0 NA exon (ENSMUSG00000034485.10, exon 16 of 19) protein_coding-exon (ENSMUSG00000034485.10, exon 16 of 19) -33254 ENSMUSG00000052143.8 ENSMUSG00000052143 ENSMUST00000063858 Gm9869 antisense Interval_110562 chr4 3924316 3924806 + 0 NA intron (ENSMUSG00000003282.9, intron 1 of 3) protein_coding-intron (ENSMUSG00000003282.9, intron 1 of 5) 13862 ENSMUSG00000003282.9 ENSMUSG00000003282 ENSMUST00000147035 Plag1 protein_coding Interval_128005 chr5 110230545 110231827 + 0 NA promoter-TSS (ENSMUSG00000029501.14) protein_coding-promoter-TSS (ENSMUSG00000029501.14) 15 ENSMUSG00000104970.1 ENSMUSG00000104970 ENSMUST00000198052 Gm43137 antisense Interval_85939 chr19 33633547 33634083 + 0 NA intron (ENSMUSG00000024766.15, intron 1 of 10) protein_coding-intron (ENSMUSG00000024766.15, intron 1 of 10) -8563 ENSMUSG00000086812.2 ENSMUSG00000086812 ENSMUST00000124230 Gm8978 protein_coding Interval_77082 chr17 86336293 86336517 + 0 NA intron (ENSMUSG00000045038.14, intron 1 of 14) protein_coding-intron (ENSMUSG00000045038.14, intron 2 of 15) -49227 ENSMUSG00000100738.1 ENSMUSG00000100738 ENSMUST00000191222 2010106C02Rik antisense Interval_35033 chr12 16778284 16779597 + 0 NA intron (ENSMUSG00000036523.16, intron 1 of 34) protein_coding-intron (ENSMUSG00000036523.16, intron 1 of 3) -11717 ENSMUSG00000105567.1 ENSMUSG00000105567 ENSMUST00000199946 Gm44305 miRNA Interval_5594 chr1 90049304 90050435 + 0 NA intron (ENSMUSG00000026301.16, intron 2 of 4) protein_coding-intron (ENSMUSG00000026301.16, intron 16 of 18) 5091 ENSMUSG00000026301.16 ENSMUSG00000026301 ENSMUST00000186522 Iqca protein_coding Interval_12104 chr1 189770095 189771663 + 0 NA intron (ENSMUSG00000026604.17, intron 1 of 9) protein_coding-intron (ENSMUSG00000026604.17, intron 1 of 18) -56351 ENSMUSG00000102248.1 ENSMUSG00000102248 ENSMUST00000192214 Gm30280 processed_pseudogene Interval_38087 chr12 75578346 75579183 + 0 NA intron (ENSMUSG00000021051.10, intron 2 of 12) protein_coding-intron (ENSMUSG00000021051.10, intron 2 of 13) -1101 ENSMUSG00000112459.1 ENSMUSG00000112459 ENSMUST00000219909 Gm47689 antisense Interval_64997 chr16 17769432 17769689 + 0 NA intron (ENSMUSG00000022750.18, intron 2 of 6) protein_coding-intron (ENSMUSG00000022750.18, intron 2 of 6) 9883 ENSMUSG00000022750.18 ENSMUSG00000022750 ENSMUST00000140306 Klhl22 protein_coding Interval_107697 chr3 111194175 111194708 + 0 NA Intergenic Intergenic 85941 ENSMUSG00000106487.1 ENSMUSG00000106487 ENSMUST00000199816 Gm43407 processed_pseudogene Interval_172975 chrX 58861667 58862430 + 0 NA Intergenic Intergenic -47312 ENSMUSG00000046180.11 ENSMUSG00000046180 ENSMUST00000062542 4930550L24Rik protein_coding Interval_138476 chr6 88512373 88512612 + 0 NA promoter-TSS (ENSMUSG00000030082.14) protein_coding-promoter-TSS (ENSMUSG00000030082.14) 303 ENSMUSG00000030082.14 ENSMUSG00000030082 ENSMUST00000155079 Sec61a1 protein_coding Interval_146885 chr7 54810992 54811363 + 0 NA Intergenic Intergenic -24321 ENSMUSG00000063297.7 ENSMUSG00000063297 ENSMUST00000082373 Luzp2 protein_coding Interval_650 chr1 9547981 9548528 + 0 NA TTS (ENSMUSG00000061024.8) protein_coding-TTS (ENSMUSG00000061024.8) 135 ENSMUSG00000025911.14 ENSMUSG00000025911 ENSMUST00000190654 Adhfe1 protein_coding Interval_152840 chr7 138655574 138657230 + 0 NA Intergenic Intergenic -44501 ENSMUSG00000109802.1 ENSMUSG00000109802 ENSMUST00000211166 Gm30808 lincRNA Interval_135384 chr6 38806632 38806818 + 0 NA intron (ENSMUSG00000061436.15, intron 2 of 14) protein_coding-intron (ENSMUSG00000061436.15, intron 1 of 3) 69198 ENSMUSG00000061436.15 ENSMUSG00000061436 ENSMUST00000114855 Hipk2 protein_coding Interval_55267 chr14 79813204 79813798 + 0 NA Intergenic Intergenic -42189 ENSMUSG00000036422.10 ENSMUSG00000036422 ENSMUST00000194214 Pcdh8 protein_coding Interval_27961 chr11 71581669 71582836 + 0 NA Intergenic Intergenic -8714 ENSMUSG00000111450.1 ENSMUSG00000111450 ENSMUST00000215428 Gm33351 lincRNA Interval_38335 chr12 77459137 77459656 + 0 NA intron (ENSMUSG00000021065.16, intron 5 of 6) protein_coding-intron (ENSMUSG00000021065.16, intron 10 of 11) 40979 ENSMUSG00000064833.1 ENSMUSG00000064833 ENSMUST00000082899 Gm25926 snRNA Interval_32326 chr11 106974565 106975522 + 0 NA Intergenic Intergenic -1953 ENSMUSG00000086481.1 ENSMUSG00000086481 ENSMUST00000150366 Gm11707 lincRNA Interval_114406 chr4 75380780 75381219 + 0 NA exon (ENSMUSG00000084026.1, exon 1 of 1) processed_pseudogene-exon (ENSMUSG00000084026.1, exon 1 of 1) 239 ENSMUSG00000084026.1 ENSMUSG00000084026 ENSMUST00000120554 Gm11259 processed_pseudogene Interval_81723 chr18 63898683 63898936 + 0 NA exon (ENSMUSG00000118258.1, exon 1 of 1) processed_pseudogene-exon (ENSMUSG00000118258.1, exon 1 of 1) 222 ENSMUSG00000118258.1 ENSMUSG00000118258 ENSMUST00000237352 Gm19076 processed_pseudogene Interval_156183 chr8 45734760 45735005 + 0 NA intron (ENSMUSG00000085440.1, intron 5 of 5) protein_coding-intron (ENSMUSG00000031626.18, intron 2 of 25) -44346 ENSMUSG00000110411.1 ENSMUSG00000110411 ENSMUST00000209931 Gm45457 TEC Interval_111829 chr4 31627390 31627964 + 0 NA Intergenic Intergenic 247205 ENSMUSG00000082254.1 ENSMUSG00000082254 ENSMUST00000118967 Gm11922 processed_pseudogene Interval_43103 chr13 24027270 24028688 + 0 NA intron (ENSMUSG00000021338.17, intron 20 of 25) protein_coding-intron (ENSMUSG00000021338.17, intron 34 of 37) -5423 ENSMUSG00000021338.17 ENSMUSG00000021338 ENSMUST00000136517 Carmil1 protein_coding Interval_34095 chr11 120498108 120500679 + 0 NA TTS (ENSMUSG00000025792.9) protein_coding-TTS (ENSMUSG00000025792.9) 1668 ENSMUSG00000025792.9 ENSMUSG00000025792 ENSMUST00000152187 Slc25a10 protein_coding Interval_26317 chr11 56107875 56108358 + 0 NA Intergenic Intergenic -67106 ENSMUSG00000037393.2 ENSMUSG00000037393 ENSMUST00000037682 Nmur2 protein_coding Interval_93178 chr2 70872399 70872657 + 0 NA Intergenic Intergenic -5301 ENSMUSG00000085868.1 ENSMUSG00000085868 ENSMUST00000150119 Gm13632 lincRNA Interval_71862 chr17 26590855 26591406 + 0 NA intron (ENSMUSG00000001576.15, intron 1 of 9) protein_coding-intron (ENSMUSG00000001576.15, intron 1 of 8) -10203 ENSMUSG00000094969.1 ENSMUSG00000094969 ENSMUST00000178795 Gm22420 miRNA Interval_102358 chr3 22143097 22143677 + 0 NA intron (ENSMUSG00000027630.13, intron 2 of 5) protein_coding-intron (ENSMUSG00000027630.13, intron 1 of 15) -62272 ENSMUSG00000103293.1 ENSMUSG00000103293 ENSMUST00000195073 Gm5842 processed_pseudogene Interval_113684 chr4 57575480 57576142 + 0 NA intron (ENSMUSG00000090053.9, intron 1 of 6) protein_coding-intron (ENSMUSG00000089945.13, intron 1 of 10) 7491 ENSMUSG00000090053.9 ENSMUSG00000090053 ENSMUST00000131201 Pakap protein_coding Interval_82780 chr18 77045547 77046014 + 0 NA intron (ENSMUSG00000025420.13, intron 1 of 16) protein_coding-intron (ENSMUSG00000025420.13, intron 1 of 13) 1507 ENSMUSG00000025420.13 ENSMUSG00000025420 ENSMUST00000123650 Katnal2 protein_coding Interval_144755 chr7 28039737 28039955 + 0 NA Intergenic Intergenic 10202 ENSMUSG00000030603.16 ENSMUSG00000030603 ENSMUST00000126528 Psmc4 protein_coding Interval_75791 chr17 71402543 71403576 + 0 NA intron (ENSMUSG00000024054.14, intron 22 of 47) protein_coding-intron (ENSMUSG00000024054.14, intron 22 of 47) -9775 ENSMUSG00000103558.1 ENSMUSG00000103558 ENSMUST00000195774 Gm38220 TEC Interval_129267 chr5 118559506 118561509 + 0 NA promoter-TSS (ENSMUSG00000018076.12) protein_coding-promoter-TSS (ENSMUSG00000018076.12) 2594 ENSMUSG00000106912.1 ENSMUSG00000106912 ENSMUST00000201036 Gm43785 TEC Interval_47736 chr13 92041460 92041946 + 0 NA intron (ENSMUSG00000021708.17, intron 2 of 9) protein_coding-intron (ENSMUSG00000021708.17, intron 2 of 33) 89953 ENSMUSG00000021708.17 ENSMUSG00000021708 ENSMUST00000146492 Rasgrf2 protein_coding Interval_11204 chr1 180147990 180148244 + 0 NA promoter-TSS (ENSMUSG00000103636.1) TEC-promoter-TSS (ENSMUSG00000103636.1) 34 ENSMUSG00000103636.1 ENSMUSG00000103636 ENSMUST00000195719 Gm38331 TEC Interval_7647 chr1 132799365 132800787 + 0 NA Intergenic Intergenic 14272 ENSMUSG00000088911.1 ENSMUSG00000088911 ENSMUST00000158286 Gm22609 snoRNA Interval_94864 chr2 98183631 98184030 + 0 NA Intergenic Intergenic -107573 ENSMUSG00000080802.1 ENSMUSG00000080802 ENSMUST00000119552 Gm13804 processed_pseudogene Interval_115430 chr4 98878266 98878816 + 0 NA Intergenic Intergenic 22927 ENSMUSG00000084188.1 ENSMUSG00000084188 ENSMUST00000117920 Gm12851 processed_pseudogene Interval_166600 chr9 61228427 61229318 + 0 NA Intergenic Intergenic 22193 ENSMUSG00000111449.1 ENSMUSG00000111449 ENSMUST00000214812 Gm34105 lincRNA Interval_25123 chr11 44322731 44323431 + 0 NA Intergenic Intergenic -55872 ENSMUSG00000086738.1 ENSMUSG00000086738 ENSMUST00000145584 Gm12154 lincRNA Interval_3160 chr1 54220866 54221253 + 0 NA Intergenic Intergenic 28149 ENSMUSG00000094013.1 ENSMUSG00000094013 ENSMUST00000178275 Gm25829 snRNA Interval_133806 chr6 12533276 12533654 + 0 NA intron (ENSMUSG00000032625.14, intron 2 of 27) protein_coding-intron (ENSMUSG00000032625.14, intron 1 of 5) -32053 ENSMUSG00000083794.1 ENSMUSG00000083794 ENSMUST00000118647 Gm16123 processed_pseudogene Interval_40711 chr12 107831776 107832101 + 0 NA Intergenic Intergenic -47897 ENSMUSG00000086975.1 ENSMUSG00000086975 ENSMUST00000134448 Gm15208 lincRNA Interval_98269 chr2 150674232 150676179 + 0 NA Intergenic Intergenic 7711 ENSMUSG00000087406.1 ENSMUSG00000087406 ENSMUST00000145525 E130215H24Rik processed_transcript Interval_95622 chr2 112985743 112985940 + 0 NA intron (ENSMUSG00000057378.15, intron 3 of 103) protein_coding-intron (ENSMUSG00000057378.15, intron 3 of 102) -299891 ENSMUSG00000041255.2 ENSMUSG00000041255 ENSMUST00000040856 Tmco5b protein_coding Interval_88317 chr2 3683627 3683841 + 0 NA intron (ENSMUSG00000026655.15, intron 2 of 4) protein_coding-intron (ENSMUSG00000026655.15, intron 2 of 4) -2628 ENSMUSG00000081070.1 ENSMUSG00000081070 ENSMUST00000120117 Gm13181 processed_pseudogene Interval_133556 chr6 6745527 6745721 + 0 NA Intergenic Intergenic -9132 ENSMUSG00000093651.1 ENSMUSG00000093651 ENSMUST00000177157 Gm5873 processed_pseudogene Interval_135840 chr6 47830083 47830939 + 0 NA promoter-TSS (ENSMUSG00000051499.7) protein_coding-promoter-TSS (ENSMUSG00000051499.7) -7 ENSMUSG00000051499.7 ENSMUSG00000051499 ENSMUST00000204984 Zfp786 protein_coding Interval_119020 chr4 135041830 135042537 + 0 NA Intergenic Intergenic 78264 ENSMUSG00000086884.1 ENSMUSG00000086884 ENSMUST00000146152 Gm16225 lincRNA Interval_91471 chr2 39105964 39106409 + 0 NA TTS (ENSMUSG00000035236.17) protein_coding-TTS (ENSMUSG00000035236.17) -6776 ENSMUSG00000035236.17 ENSMUSG00000035236 ENSMUST00000142872 Scai protein_coding Interval_81755 chr18 64430024 64430804 + 0 NA Intergenic Intergenic -1745 ENSMUSG00000118375.1 ENSMUSG00000118375 ENSMUST00000237830 Gm36804 processed_pseudogene Interval_42325 chr13 12105642 12107311 + 0 NA promoter-TSS (ENSMUSG00000021313.16) protein_coding-promoter-TSS (ENSMUSG00000021313.16) -54278 ENSMUSG00000113347.1 ENSMUSG00000113347 ENSMUST00000220496 Gm47323 processed_pseudogene Interval_30621 chr11 95519011 95521875 + 0 NA Intergenic Intergenic -5873 ENSMUSG00000046719.7 ENSMUSG00000046719 ENSMUST00000058866 Nxph3 protein_coding Interval_83460 chr18 85917038 85918346 + 0 NA Intergenic Intergenic -68963 ENSMUSG00000118241.1 ENSMUSG00000118241 ENSMUST00000237360 Gm5824 processed_pseudogene Interval_102832 chr3 31834008 31834752 + 0 NA Intergenic Intergenic -120384 ENSMUSG00000103539.1 ENSMUSG00000103539 ENSMUST00000194517 Gm37834 TEC Interval_19354 chr10 97602397 97602832 + 0 NA Intergenic Intergenic -4265 ENSMUSG00000019932.8 ENSMUSG00000019932 ENSMUST00000105286 Kera protein_coding Interval_78830 chr18 20870363 20871192 + 0 NA intron (ENSMUSG00000033382.15, intron 4 of 28) protein_coding-intron (ENSMUSG00000033382.15, intron 4 of 15) 25316 ENSMUSG00000033382.15 ENSMUSG00000033382 ENSMUST00000224530 Trappc8 protein_coding Interval_19029 chr10 93906737 93908978 + 0 NA Intergenic Intergenic 8479 ENSMUSG00000087798.1 ENSMUSG00000087798 ENSMUST00000157173 Gm25962 snoRNA Interval_112190 chr4 35375283 35375760 + 0 NA Intergenic Intergenic -25537 ENSMUSG00000083934.1 ENSMUSG00000083934 ENSMUST00000122251 Gm12368 processed_pseudogene Interval_88891 chr2 12160316 12161338 + 0 NA intron (ENSMUSG00000026768.10, intron 24 of 30) protein_coding-intron (ENSMUSG00000026768.10, intron 23 of 29) -31085 ENSMUSG00000104174.1 ENSMUSG00000104174 ENSMUST00000192947 Gm37701 TEC Interval_143467 chr7 7051797 7052072 + 0 NA Intergenic Intergenic 11518 ENSMUSG00000109177.1 ENSMUSG00000109177 ENSMUST00000207209 Pafah1b1-ps2 unprocessed_pseudogene Interval_169859 chr9 102544655 102545526 + 0 NA exon (ENSMUSG00000035606.8, exon 11 of 11) protein_coding-exon (ENSMUSG00000035606.8, exon 11 of 11) -2676 ENSMUSG00000088324.1 ENSMUSG00000088324 ENSMUST00000157699 Gm25669 rRNA Interval_53888 chr14 63143819 63144111 + 0 NA exon (ENSMUSG00000021939.8, exon 10 of 10) protein_coding-exon (ENSMUSG00000021939.8, exon 10 of 10) 20960 ENSMUSG00000021273.11 ENSMUSG00000021273 ENSMUST00000224267 Fdft1 protein_coding Interval_41878 chr13 3850169 3851228 + 0 NA Intergenic Intergenic -3570 ENSMUSG00000099269.3 ENSMUSG00000099269 ENSMUST00000184271 Calm5 protein_coding Interval_73573 chr17 40620486 40620759 + 0 NA Intergenic Intergenic -11453 ENSMUSG00000093957.1 ENSMUSG00000093957 ENSMUST00000177574 Esp3 protein_coding Interval_77138 chr17 86801533 86803820 + 0 NA intron (ENSMUSG00000024140.10, intron 2 of 15) protein_coding-intron (ENSMUSG00000024140.10, intron 2 of 15) -21657 ENSMUSG00000024140.10 ENSMUSG00000024140 ENSMUST00000234447 Epas1 protein_coding Interval_162589 chr9 5459821 5461013 + 0 NA Intergenic Intergenic 114941 ENSMUSG00000025887.10 ENSMUSG00000025887 ENSMUST00000151332 Casp12 protein_coding Interval_112648 chr4 43795055 43796550 + 0 NA Intergenic Intergenic 4453 ENSMUSG00000081329.1 ENSMUSG00000081329 ENSMUST00000117665 Gm12492 processed_pseudogene Interval_173368 chrX 85132814 85133453 + 0 NA intron (ENSMUSG00000045103.19, intron 39 of 50) protein_coding-intron (ENSMUSG00000045103.19, intron 6 of 17) 103433 ENSMUSG00000081379.1 ENSMUSG00000081379 ENSMUST00000118249 Gm14771 processed_pseudogene Interval_136424 chr6 54336624 54336849 + 0 NA intron (ENSMUSG00000073067.10, intron 3 of 13) processed_transcript-intron (ENSMUSG00000073067.10, intron 3 of 13) -9395 ENSMUSG00000073067.10 ENSMUSG00000073067 ENSMUST00000135612 9130019P16Rik processed_transcript Interval_61643 chr15 83113052 83113327 + 0 NA TTS (ENSMUSG00000018040.9) protein_coding-intron (ENSMUSG00000058586.12, intron 1 of 2) 5157 ENSMUSG00000018040.9 ENSMUSG00000018040 ENSMUST00000167483 Rrp7a protein_coding Interval_29639 chr11 85740906 85741158 + 0 NA intron (ENSMUSG00000059439.15, intron 1 of 4) protein_coding-intron (ENSMUSG00000059439.15, intron 23 of 24) 19670 ENSMUSG00000093278.1 ENSMUSG00000093278 ENSMUST00000175537 Mir5110 miRNA Interval_44166 chr13 41373132 41373470 + 0 NA intron (ENSMUSG00000021365.15, intron 2 of 2) protein_coding-intron (ENSMUSG00000021365.15, intron 2 of 7) -6655 ENSMUSG00000114914.1 ENSMUSG00000114914 ENSMUST00000225967 Gm48571 antisense Interval_22051 chr11 6006440 6007959 + 0 NA intron (ENSMUSG00000057897.14, intron 3 of 10) protein_coding-intron (ENSMUSG00000057897.14, intron 3 of 18) -23061 ENSMUSG00000057897.14 ENSMUSG00000057897 ENSMUST00000129098 Camk2b protein_coding Interval_41408 chr12 113471943 113472144 + 0 NA Intergenic Intergenic -1333 ENSMUSG00000095444.1 ENSMUSG00000095444 ENSMUST00000179560 Ighd2-4 IG_D_gene Interval_10655 chr1 172490038 172490864 + 0 NA promoter-TSS (ENSMUSG00000037995.15) protein_coding-promoter-TSS (ENSMUSG00000037995.15) -1513 ENSMUSG00000037995.15 ENSMUSG00000037995 ENSMUST00000150855 Igsf9 protein_coding Interval_127914 chr5 108988320 108989505 + 0 NA Intergenic Intergenic 16115 ENSMUSG00000093725.1 ENSMUSG00000093725 ENSMUST00000175736 Gm18595 processed_pseudogene Interval_145764 chr7 38141532 38142601 + 0 NA Intergenic Intergenic 34605 ENSMUSG00000089230.1 ENSMUSG00000089230 ENSMUST00000158605 Gm22203 snRNA Interval_104625 chr3 68928446 68929223 + 0 NA intron (ENSMUSG00000027778.15, intron 12 of 19) protein_coding-intron (ENSMUSG00000027778.15, intron 11 of 18) -11511 ENSMUSG00000111756.1 ENSMUSG00000111756 ENSMUST00000217619 Gm48183 TEC Interval_24960 chr11 42075268 42075705 + 0 NA Intergenic Intergenic 106618 ENSMUSG00000010803.13 ENSMUSG00000010803 ENSMUST00000206085 Gabra1 protein_coding Interval_160296 chr8 107828304 107829410 + 0 NA Intergenic Intergenic -12100 ENSMUSG00000095727.1 ENSMUSG00000095727 ENSMUST00000178119 Gm23646 miRNA Interval_70047 chr17 4969425 4969652 + 0 NA Intergenic Intergenic -22724 ENSMUSG00000116551.1 ENSMUSG00000116551 ENSMUST00000232522 Gm41517 lincRNA Interval_14585 chr10 36588697 36589231 + 0 NA intron (ENSMUSG00000044499.11, intron 2 of 5) protein_coding-intron (ENSMUSG00000044499.11, intron 2 of 5) 25110 ENSMUSG00000111231.1 ENSMUSG00000111231 ENSMUST00000214665 Gm47054 TEC Interval_63732 chr15 103115109 103116473 + 0 NA Intergenic Intergenic -11189 ENSMUSG00000101588.1 ENSMUSG00000101588 ENSMUST00000188201 Gm28265 lincRNA Interval_98681 chr2 154228514 154228779 + 0 NA intron (ENSMUSG00000038572.7, intron 4 of 14) protein_coding-intron (ENSMUSG00000038572.7, intron 4 of 14) 4904 ENSMUSG00000038572.7 ENSMUSG00000038572 ENSMUST00000045959 Bpifb5 protein_coding Interval_38221 chr12 76443947 76445630 + 0 NA intron (ENSMUSG00000073000.3, intron 1 of 1) lincRNA-intron (ENSMUSG00000073000.3, intron 1 of 3) -4910 ENSMUSG00000073000.3 ENSMUSG00000073000 ENSMUST00000220043 Gm10451 lincRNA Interval_10414 chr1 170596243 170596510 + 0 NA Intergenic Intergenic -34545 ENSMUSG00000102193.1 ENSMUSG00000102193 ENSMUST00000194441 Gm7299 processed_pseudogene Interval_88112 chr19 59248087 59249069 + 0 NA Intergenic Intergenic -12381 ENSMUSG00000025094.8 ENSMUSG00000025094 ENSMUST00000236270 Slc18a2 protein_coding Interval_62134 chr15 87787136 87787655 + 0 NA Intergenic Intergenic 8548 ENSMUSG00000098938.1 ENSMUSG00000098938 ENSMUST00000183709 Mir6393 miRNA Interval_151308 chr7 120891361 120892388 + 0 NA promoter-TSS (ENSMUSG00000035064.17) protein_coding-promoter-TSS (ENSMUSG00000035064.17) 1169 ENSMUSG00000109337.1 ENSMUSG00000109337 ENSMUST00000207651 Gm45047 TEC Interval_32424 chr11 107468761 107471095 + 0 NA exon (ENSMUSG00000040430.18, exon 1 of 10) protein_coding-exon (ENSMUSG00000040430.18, exon 1 of 10) -9600 ENSMUSG00000020720.13 ENSMUSG00000020720 ENSMUST00000106750 Psmd12 protein_coding Interval_83183 chr18 82600272 82601667 + 0 NA intron (ENSMUSG00000041258.18, intron 6 of 7) protein_coding-intron (ENSMUSG00000041258.18, intron 28 of 29) 46423 ENSMUSG00000041607.17 ENSMUSG00000041607 ENSMUST00000150952 Mbp protein_coding Interval_87308 chr19 47527953 47528300 + 0 NA intron (ENSMUSG00000042694.17, intron 3 of 3) protein_coding-intron (ENSMUSG00000042694.17, intron 3 of 9) 8898 ENSMUSG00000042694.17 ENSMUSG00000042694 ENSMUST00000183283 Stn1 protein_coding Interval_114533 chr4 82343815 82345608 + 0 NA intron (ENSMUSG00000008575.17, intron 6 of 6) protein_coding-intron (ENSMUSG00000008575.17, intron 6 of 11) -94699 ENSMUSG00000084595.1 ENSMUSG00000084595 ENSMUST00000122646 n-R5s188 rRNA Interval_147495 chr7 67721946 67723054 + 0 NA intron (ENSMUSG00000030555.16, intron 5 of 6) protein_coding-intron (ENSMUSG00000030555.16, intron 10 of 11) -36817 ENSMUSG00000108871.1 ENSMUSG00000108871 ENSMUST00000207427 Gm45102 TEC Interval_74066 chr17 46362584 46362919 + 0 NA Intergenic Intergenic -34775 ENSMUSG00000032842.13 ENSMUSG00000032842 ENSMUST00000170168 Abcc10 protein_coding Interval_152965 chr7 140089961 140090246 + 0 NA Intergenic Intergenic -3292 ENSMUSG00000025467.8 ENSMUSG00000025467 ENSMUST00000026540 Prap1 protein_coding Interval_105171 chr3 83126757 83129943 + 0 NA exon (ENSMUSG00000074517.2, exon 1 of 1) lincRNA-exon (ENSMUSG00000074517.2, exon 1 of 1) 402 ENSMUSG00000102692.1 ENSMUSG00000102692 ENSMUST00000191829 Dchs2 protein_coding Interval_32579 chr11 108834370 108834670 + 0 NA intron (ENSMUSG00000020728.17, intron 5 of 5) protein_coding-intron (ENSMUSG00000020728.17, intron 25 of 27) 14187 ENSMUSG00000085811.1 ENSMUSG00000085811 ENSMUST00000143781 Cep112it sense_intronic Interval_5716 chr1 91179171 91180490 + 0 NA promoter-TSS (ENSMUSG00000034353.14) protein_coding-promoter-TSS (ENSMUSG00000034353.14) -212 ENSMUSG00000034353.14 ENSMUSG00000034353 ENSMUST00000097648 Ramp1 protein_coding Interval_9592 chr1 159932287 159932481 + 0 NA promoter-TSS (ENSMUSG00000103719.1) antisense-promoter-TSS (ENSMUSG00000103719.1) -658 ENSMUSG00000103719.1 ENSMUSG00000103719 ENSMUST00000195328 Gm38039 antisense Interval_24641 chr11 35561250 35561758 + 0 NA intron (ENSMUSG00000056427.10, intron 1 of 8) protein_coding-intron (ENSMUSG00000056427.10, intron 6 of 35) -55312 ENSMUSG00000065583.1 ENSMUSG00000065583 ENSMUST00000083649 Mir218-2 miRNA Interval_27712 chr11 69599364 69601048 + 0 NA TTS (ENSMUSG00000041329.13) protein_coding-TTS (ENSMUSG00000041329.13) 2956 ENSMUSG00000041329.13 ENSMUSG00000041329 ENSMUST00000153198 Atp1b2 protein_coding Interval_42110 chr13 8885274 8886348 + 0 NA promoter-TSS (ENSMUSG00000058258.14) protein_coding-promoter-TSS (ENSMUSG00000058258.14) 12 ENSMUSG00000113245.1 ENSMUSG00000113245 ENSMUST00000221551 Gm48574 TEC Interval_83600 chr18 90463146 90463385 + 0 NA intron (ENSMUSG00000117805.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000117805.1, intron 1 of 1) 20195 ENSMUSG00000117805.1 ENSMUSG00000117805 ENSMUST00000237124 Gm18280 lincRNA Interval_24838 chr11 40182990 40183519 + 0 NA intron (ENSMUSG00000085301.1, intron 5 of 7) lincRNA-intron (ENSMUSG00000085301.1, intron 5 of 7) 175060 ENSMUSG00000085301.1 ENSMUSG00000085301 ENSMUST00000130945 Gm12132 lincRNA Interval_61557 chr15 82315375 82316725 + 0 NA Intergenic Intergenic 16635 ENSMUSG00000022453.8 ENSMUSG00000022453 ENSMUST00000230269 Naga protein_coding Interval_149047 chr7 92656309 92657463 + 0 NA intron (ENSMUSG00000041328.16, intron 5 of 12) protein_coding-intron (ENSMUSG00000041328.16, intron 8 of 15) 13017 ENSMUSG00000041328.16 ENSMUSG00000041328 ENSMUST00000208058 Pcf11 protein_coding Interval_137081 chr6 67225666 67226020 + 0 NA intron (ENSMUSG00000107799.1, intron 1 of 2) antisense-intron (ENSMUSG00000107799.1, intron 1 of 2) -3299 ENSMUSG00000108013.1 ENSMUSG00000108013 ENSMUST00000203382 Gm44052 processed_pseudogene Interval_139070 chr6 94749733 94751360 + 0 NA Intergenic Intergenic -48886 ENSMUSG00000107716.1 ENSMUSG00000107716 ENSMUST00000203986 Gm43997 TEC Interval_5581 chr1 89943393 89943733 + 0 NA Intergenic Intergenic 13302 ENSMUSG00000092627.2 ENSMUSG00000092627 ENSMUST00000189763 D130058E05Rik processed_transcript Interval_124404 chr5 45539428 45540697 + 0 NA intron (ENSMUSG00000015879.8, intron 10 of 15) protein_coding-intron (ENSMUSG00000015879.8, intron 10 of 15) -3520 ENSMUSG00000015879.8 ENSMUSG00000015879 ENSMUST00000016023 Fam184b protein_coding Interval_76895 chr17 84790092 84791335 + 0 NA promoter-TSS (ENSMUSG00000024120.12) protein_coding-promoter-TSS (ENSMUSG00000024120.12) 5921 ENSMUSG00000117412.1 ENSMUSG00000117412 ENSMUST00000234983 Gm49979 TEC Interval_39769 chr12 97921499 97922456 + 0 NA Intergenic Intergenic -49457 ENSMUSG00000111885.1 ENSMUSG00000111885 ENSMUST00000218234 Gm35326 lincRNA Interval_128354 chr5 112709950 112710338 + 0 NA intron (ENSMUSG00000072720.9, intron 9 of 10) protein_coding-intron (ENSMUSG00000072720.9, intron 42 of 43) 34769 ENSMUSG00000104807.1 ENSMUSG00000104807 ENSMUST00000197981 Gm42865 lincRNA Interval_53260 chr14 55634905 55635870 + 0 NA promoter-TSS (ENSMUSG00000002319.16) protein_coding-promoter-TSS (ENSMUSG00000002319.16) 2508 ENSMUSG00000115232.1 ENSMUSG00000115232 ENSMUST00000156420 Gm49378 protein_coding Interval_145066 chr7 29841740 29842503 + 0 NA intron (ENSMUSG00000050855.16, intron 3 of 3) protein_coding-intron (ENSMUSG00000050855.16, intron 3 of 3) -10964 ENSMUSG00000097809.2 ENSMUSG00000097809 ENSMUST00000180801 Gm26554 antisense Interval_108050 chr3 121104750 121105742 + 0 NA Intergenic Intergenic -63410 ENSMUSG00000106329.1 ENSMUSG00000106329 ENSMUST00000199790 Gm10652 TEC Interval_99309 chr2 158840365 158840572 + 0 NA intron (ENSMUSG00000027655.14, intron 13 of 17) protein_coding-intron (ENSMUSG00000027655.14, intron 14 of 20) 13050 ENSMUSG00000027655.14 ENSMUSG00000027655 ENSMUST00000143195 Dhx35 protein_coding Interval_59889 chr15 60859621 60860170 + 0 NA Intergenic Intergenic -6117 ENSMUSG00000072568.4 ENSMUSG00000072568 ENSMUST00000186536 Lratd2 protein_coding Interval_16940 chr10 70026192 70026570 + 0 NA exon (ENSMUSG00000069601.14, exon 43 of 43) protein_coding-exon (ENSMUSG00000069601.14, exon 43 of 43) -148630 ENSMUSG00000048701.13 ENSMUSG00000048701 ENSMUST00000135607 Ccdc6 protein_coding Interval_95949 chr2 118637713 118638606 + 0 NA intron (ENSMUSG00000040084.9, intron 20 of 22) protein_coding-intron (ENSMUSG00000040084.9, intron 20 of 22) 7582 ENSMUSG00000040084.9 ENSMUSG00000040084 ENSMUST00000126013 Bub1b protein_coding Interval_82154 chr18 68116698 68118356 + 0 NA intron (ENSMUSG00000117891.1, intron 1 of 3) protein_coding-intron (ENSMUSG00000024544.9, intron 3 of 5) 847 ENSMUSG00000117891.1 ENSMUSG00000117891 ENSMUST00000236198 Gm41764 antisense Interval_124116 chr5 38469494 38470689 + 0 NA intron (ENSMUSG00000005107.13, intron 2 of 4) protein_coding-intron (ENSMUSG00000005107.13, intron 3 of 10) 10091 ENSMUSG00000005107.13 ENSMUSG00000005107 ENSMUST00000156076 Slc2a9 protein_coding Interval_83144 chr18 82109996 82110944 + 0 NA Intergenic Intergenic 114636 ENSMUSG00000118278.1 ENSMUSG00000118278 ENSMUST00000236169 Gm50293 TEC Interval_151787 chr7 126669746 126670622 + 0 NA intron (ENSMUSG00000030714.14, intron 3 of 7) protein_coding-intron (ENSMUSG00000030714.14, intron 4 of 9) 6191 ENSMUSG00000030711.16 ENSMUSG00000030711 ENSMUST00000155419 Sult1a1 protein_coding Interval_75093 chr17 63256380 63256999 + 0 NA intron (ENSMUSG00000023965.13, intron 3 of 5) protein_coding-intron (ENSMUSG00000023965.13, intron 6 of 8) 53951 ENSMUSG00000088853.1 ENSMUSG00000088853 ENSMUST00000158228 Gm24730 snoRNA Interval_127197 chr5 101090659 101091932 + 0 NA Intergenic Intergenic -177588 ENSMUSG00000106255.1 ENSMUSG00000106255 ENSMUST00000199211 Gm36793 lincRNA Interval_42280 chr13 11681987 11682888 + 0 NA intron (ENSMUSG00000021313.16, intron 3 of 18) protein_coding-intron (ENSMUSG00000021313.16, intron 61 of 104) -97483 ENSMUSG00000021313.16 ENSMUSG00000021313 ENSMUST00000221341 Ryr2 protein_coding Interval_119968 chr4 141154211 141154563 + 0 NA intron (ENSMUSG00000028920.9, intron 1 of 3) protein_coding-intron (ENSMUSG00000028920.9, intron 1 of 9) 6465 ENSMUSG00000028920.9 ENSMUSG00000028920 ENSMUST00000146768 Fbxo42 protein_coding Interval_137297 chr6 71151093 71151536 + 0 NA Intergenic Intergenic -13485 ENSMUSG00000108206.1 ENSMUSG00000108206 ENSMUST00000204123 Gm44427 lincRNA Interval_81119 chr18 54212229 54212857 + 0 NA Intergenic Intergenic -181235 ENSMUSG00000117769.1 ENSMUSG00000117769 ENSMUST00000237377 Gm8594 processed_pseudogene Interval_85534 chr19 28160768 28161096 + 0 NA Intergenic Intergenic -14629 ENSMUSG00000117862.1 ENSMUSG00000117862 ENSMUST00000236360 Gm35781 processed_pseudogene Interval_83582 chr18 90173051 90173732 + 0 NA Intergenic Intergenic -55508 ENSMUSG00000089008.1 ENSMUSG00000089008 ENSMUST00000158383 Gm23859 snRNA Interval_13252 chr10 13605243 13606219 + 0 NA Intergenic Intergenic -21467 ENSMUSG00000112055.1 ENSMUSG00000112055 ENSMUST00000219684 Gm48773 lincRNA Interval_101862 chr3 10239273 10240127 + 0 NA Intergenic Intergenic -2112 ENSMUSG00000102834.2 ENSMUSG00000102834 ENSMUST00000194040 1700029B24Rik TEC Interval_43303 chr13 28910161 28910706 + 0 NA Intergenic Intergenic -12488 ENSMUSG00000113352.1 ENSMUSG00000113352 ENSMUST00000223473 Gm34639 lincRNA Interval_148051 chr7 78865485 78866085 + 0 NA Intergenic Intergenic -7343 ENSMUSG00000108385.1 ENSMUSG00000108385 ENSMUST00000205902 Gm44730 lincRNA Interval_59824 chr15 59565567 59566042 + 0 NA intron (ENSMUSG00000059586.10, intron 5 of 7) protein_coding-intron (ENSMUSG00000059586.10, intron 4 of 6) -52786 ENSMUSG00000115896.1 ENSMUSG00000115896 ENSMUST00000229684 Gm36677 lincRNA Interval_97646 chr2 141905428 141905925 + 0 NA intron (ENSMUSG00000068205.14, intron 3 of 13) protein_coding-intron (ENSMUSG00000068205.14, intron 8 of 17) 66887 ENSMUSG00000082412.1 ENSMUSG00000082412 ENSMUST00000119675 Fau-ps1 processed_pseudogene Interval_102143 chr3 18580385 18581828 + 0 NA Intergenic Intergenic 16568 ENSMUSG00000105280.1 ENSMUSG00000105280 ENSMUST00000198338 Pgk1-ps3 processed_pseudogene Interval_157969 chr8 77419714 77420486 + 0 NA exon (ENSMUSG00000037148.8, exon 7 of 23) protein_coding-exon (ENSMUSG00000037148.8, exon 7 of 23) -47584 ENSMUSG00000109873.1 ENSMUSG00000109873 ENSMUST00000209499 Gm45407 TEC Interval_80283 chr18 38804016 38804782 + 0 NA intron (ENSMUSG00000118193.1, intron 1 of 5) protein_coding-intron (ENSMUSG00000118193.1, intron 1 of 5) -32052 ENSMUSG00000081773.1 ENSMUSG00000081773 ENSMUST00000119217 Gm8302 processed_pseudogene Interval_126622 chr5 91035362 91035634 + 0 NA TTS (ENSMUSG00000035020.11) protein_coding-TTS (ENSMUSG00000035020.11) 8034 ENSMUSG00000035020.11 ENSMUSG00000035020 ENSMUST00000041516 Epgn protein_coding Interval_162297 chr8 126854216 126854712 + 0 NA intron (ENSMUSG00000110697.1, intron 1 of 4) lincRNA-intron (ENSMUSG00000110697.1, intron 1 of 8) 15231 ENSMUSG00000110498.1 ENSMUSG00000110498 ENSMUST00000212914 A630001O12Rik lincRNA Interval_69354 chr16 92420195 92421699 + 0 NA intron (ENSMUSG00000022951.16, intron 1 of 3) protein_coding-intron (ENSMUSG00000022951.16, intron 1 of 3) -20969 ENSMUSG00000022951.16 ENSMUSG00000022951 ENSMUST00000232457 Rcan1 protein_coding Interval_125216 chr5 65415338 65416539 + 0 NA intron (ENSMUSG00000029201.14, intron 6 of 6) protein_coding-intron (ENSMUSG00000029201.14, intron 11 of 11) -2911 ENSMUSG00000105896.1 ENSMUSG00000105896 ENSMUST00000200016 Gm43311 TEC Interval_90638 chr2 31611067 31611900 + 0 NA promoter-TSS (ENSMUSG00000098904.1) miRNA-promoter-TSS (ENSMUSG00000098904.1) -938 ENSMUSG00000098904.1 ENSMUSG00000098904 ENSMUST00000183343 Mir6998 miRNA Interval_103536 chr3 47675994 47676762 + 0 NA Intergenic Intergenic -216040 ENSMUSG00000103798.1 ENSMUSG00000103798 ENSMUST00000193328 Gm2229 processed_pseudogene Interval_97764 chr2 143925769 143926216 + 0 NA intron (ENSMUSG00000015932.8, intron 1 of 3) protein_coding-intron (ENSMUSG00000015932.8, intron 1 of 3) 10672 ENSMUSG00000015932.8 ENSMUSG00000015932 ENSMUST00000103172 Dstn protein_coding Interval_5033 chr1 84470440 84470937 + 0 NA intron (ENSMUSG00000036766.12, intron 7 of 12) protein_coding-intron (ENSMUSG00000036766.12, intron 7 of 12) -75289 ENSMUSG00000104396.1 ENSMUSG00000104396 ENSMUST00000191700 Gm37959 TEC Interval_114554 chr4 82462977 82463471 + 0 NA intron (ENSMUSG00000008575.17, intron 2 of 4) protein_coding-intron (ENSMUSG00000008575.17, intron 2 of 11) 23814 ENSMUSG00000084595.1 ENSMUSG00000084595 ENSMUST00000122646 n-R5s188 rRNA Interval_32228 chr11 106325635 106326277 + 0 NA intron (ENSMUSG00000001027.7, intron 18 of 23) protein_coding-intron (ENSMUSG00000001027.7, intron 18 of 23) -11427 ENSMUSG00000040592.11 ENSMUSG00000040592 ENSMUST00000167143 Cd79b protein_coding Interval_118509 chr4 132178190 132179253 + 0 NA Intergenic Intergenic -29837 ENSMUSG00000081394.1 ENSMUSG00000081394 ENSMUST00000117559 Gm13215 processed_pseudogene Interval_25635 chr11 50319398 50320332 + 0 NA intron (ENSMUSG00000020368.15, intron 1 of 14) protein_coding-intron (ENSMUSG00000020368.15, intron 1 of 14) 5808 ENSMUSG00000020368.15 ENSMUSG00000020368 ENSMUST00000155801 Canx protein_coding Interval_154885 chr8 24674079 24675597 + 0 NA promoter-TSS (ENSMUSG00000031552.13) protein_coding-promoter-TSS (ENSMUSG00000031552.13) -110 ENSMUSG00000031552.13 ENSMUSG00000031552 ENSMUST00000173833 Adam18 protein_coding Interval_115694 chr4 102307903 102308121 + 0 NA intron (ENSMUSG00000028525.16, intron 1 of 14) protein_coding-intron (ENSMUSG00000028525.16, intron 1 of 5) 52782 ENSMUSG00000028525.16 ENSMUSG00000028525 ENSMUST00000106901 Pde4b protein_coding Interval_170033 chr9 103872106 103872419 + 0 NA Intergenic Intergenic -15747 ENSMUSG00000100266.2 ENSMUSG00000100266 ENSMUST00000187540 Gm5372 processed_pseudogene Interval_84898 chr19 18676243 18676478 + 0 NA intron (ENSMUSG00000024726.10, intron 1 of 7) protein_coding-intron (ENSMUSG00000024726.10, intron 1 of 7) 5031 ENSMUSG00000024726.10 ENSMUSG00000024726 ENSMUST00000236401 Carnmt1 protein_coding Interval_125747 chr5 73854057 73855442 + 0 NA Intergenic Intergenic -58147 ENSMUSG00000107027.1 ENSMUSG00000107027 ENSMUST00000202487 1700019F05Rik lincRNA Interval_28578 chr11 76919897 76920290 + 0 NA Intergenic Intergenic 15618 ENSMUSG00000020839.16 ENSMUSG00000020839 ENSMUST00000136899 Tmigd1 protein_coding Interval_42882 chr13 21024626 21024992 + 0 NA TTS (ENSMUSG00000021322.8) protein_coding-TTS (ENSMUSG00000021322.8) 50138 ENSMUSG00000042869.2 ENSMUSG00000042869 ENSMUST00000058168 Olfr1370 protein_coding Interval_10756 chr1 174319734 174320800 + 0 NA Intergenic Intergenic -10251 ENSMUSG00000026531.4 ENSMUSG00000026531 ENSMUST00000027816 Mptx1 protein_coding Interval_64822 chr16 16183728 16183974 + 0 NA Intergenic Intergenic -29467 ENSMUSG00000041957.15 ENSMUSG00000041957 ENSMUST00000039408 Pkp2 protein_coding Interval_29970 chr11 88456071 88456269 + 0 NA intron (ENSMUSG00000069769.13, intron 2 of 5) protein_coding-intron (ENSMUSG00000069769.13, intron 7 of 13) -22656 ENSMUSG00000084411.2 ENSMUSG00000084411 ENSMUST00000120278 Gm11510 processed_pseudogene Interval_169709 chr9 100545246 100546732 + 0 NA promoter-TSS (ENSMUSG00000032475.15) protein_coding-promoter-TSS (ENSMUSG00000032475.15) -258 ENSMUSG00000032475.15 ENSMUSG00000032475 ENSMUST00000188670 Nck1 protein_coding Interval_41538 chr12 116131242 116131621 + 0 NA intron (ENSMUSG00000011171.11, intron 6 of 9) protein_coding-intron (ENSMUSG00000011171.11, intron 6 of 12) 7217 ENSMUSG00000093765.7 ENSMUSG00000093765 ENSMUST00000177059 Gm20658 antisense Interval_60955 chr15 78161983 78162932 + 0 NA intron (ENSMUSG00000016637.7, intron 6 of 6) protein_coding-intron (ENSMUSG00000016637.7, intron 6 of 6) 4479 ENSMUSG00000016637.7 ENSMUSG00000016637 ENSMUST00000229417 Ift27 protein_coding Interval_141985 chr6 136367624 136368599 + 0 NA Intergenic Intergenic -15617 ENSMUSG00000083916.2 ENSMUSG00000083916 ENSMUST00000118247 Gm15476 processed_pseudogene Interval_12125 chr1 189906330 189906592 + 0 NA intron (ENSMUSG00000026603.13, intron 2 of 9) protein_coding-intron (ENSMUSG00000026603.13, intron 2 of 11) 9498 ENSMUSG00000103467.1 ENSMUSG00000103467 ENSMUST00000191702 Gm38245 TEC Interval_82892 chr18 78432701 78433104 + 0 NA intron (ENSMUSG00000024552.16, intron 2 of 21) protein_coding-intron (ENSMUSG00000024552.16, intron 2 of 11) -43976 ENSMUSG00000117661.1 ENSMUSG00000117661 ENSMUST00000235470 4931439C15Rik antisense Interval_9140 chr1 153986872 153987672 + 0 NA Intergenic Intergenic 18945 ENSMUSG00000101903.1 ENSMUSG00000101903 ENSMUST00000186055 Gm29291 lincRNA Interval_105296 chr3 84653736 84655869 + 0 NA intron (ENSMUSG00000102805.5, intron 3 of 9) protein_coding-intron (ENSMUSG00000102805.5, intron 3 of 9) -11408 ENSMUSG00000056498.13 ENSMUSG00000056498 ENSMUST00000128344 Tmem154 protein_coding Interval_54794 chr14 75136694 75136907 + 0 NA intron (ENSMUSG00000089733.1, intron 1 of 1) protein_coding-intron (ENSMUSG00000021998.16, intron 1 of 5) 112 ENSMUSG00000089733.1 ENSMUSG00000089733 ENSMUST00000162051 Gm15628 lincRNA Interval_129972 chr5 123381996 123382984 + 0 NA Intergenic Intergenic 12574 ENSMUSG00000086700.2 ENSMUSG00000086700 ENSMUST00000151096 Gm15747 antisense Interval_153239 chr7 142714606 142715197 + 0 NA exon (ENSMUSG00000000215.11, exon 3 of 5) protein_coding-exon (ENSMUSG00000000215.11, exon 3 of 5) 28480 ENSMUSG00000000215.11 ENSMUSG00000000215 ENSMUST00000162317 Ins2 protein_coding Interval_47732 chr13 91915784 91916248 + 0 NA intron (ENSMUSG00000021708.17, intron 6 of 14) protein_coding-intron (ENSMUSG00000021708.17, intron 25 of 33) -39131 ENSMUSG00000021622.3 ENSMUSG00000021622 ENSMUST00000022122 Ckmt2 protein_coding Interval_61927 chr15 85302965 85304347 + 0 NA Intergenic Intergenic -32589 ENSMUSG00000016541.10 ENSMUSG00000016541 ENSMUST00000163242 Atxn10 protein_coding Interval_133132 chr5 150064385 150065321 + 0 NA intron (ENSMUSG00000053368.13, intron 13 of 16) protein_coding-intron (ENSMUSG00000053368.13, intron 14 of 17) 17942 ENSMUSG00000107384.1 ENSMUSG00000107384 ENSMUST00000202037 Gm42557 antisense Interval_59167 chr15 45763388 45763650 + 0 NA Intergenic Intergenic -199007 ENSMUSG00000115549.1 ENSMUSG00000115549 ENSMUST00000228018 Gm2203 processed_pseudogene Interval_153473 chr7 145034199 145034985 + 0 NA Intergenic Intergenic -94667 ENSMUSG00000070348.5 ENSMUSG00000070348 ENSMUST00000135985 Ccnd1 protein_coding Interval_6809 chr1 119740054 119740446 + 0 NA intron (ENSMUSG00000026384.13, intron 10 of 18) protein_coding-intron (ENSMUSG00000026384.13, intron 10 of 26) -24257 ENSMUSG00000026384.13 ENSMUSG00000026384 ENSMUST00000163621 Ptpn4 protein_coding Interval_61417 chr15 81480823 81481450 + 0 NA Intergenic Intergenic 5245 ENSMUSG00000115917.1 ENSMUSG00000115917 ENSMUST00000231011 Gm49406 processed_pseudogene Interval_106616 chr3 97773842 97774486 + 0 NA intron (ENSMUSG00000038170.15, intron 8 of 45) protein_coding-intron (ENSMUSG00000038170.15, intron 8 of 46) 43635 ENSMUSG00000105245.1 ENSMUSG00000105245 ENSMUST00000200435 Gm31305 antisense Interval_70126 chr17 5527388 5527775 + 0 NA intron (ENSMUSG00000034265.8, intron 1 of 8) protein_coding-intron (ENSMUSG00000034265.8, intron 1 of 8) 35024 ENSMUSG00000034265.8 ENSMUSG00000034265 ENSMUST00000089185 Zdhhc14 protein_coding Interval_21284 chr10 127661913 127662889 + 0 NA intron (ENSMUSG00000025402.12, intron 5 of 5) protein_coding-intron (ENSMUSG00000025402.12, intron 6 of 6) -1438 ENSMUSG00000085731.1 ENSMUSG00000085731 ENSMUST00000133270 Gm16229 antisense Interval_14645 chr10 37594618 37594802 + 0 NA Intergenic Intergenic -142030 ENSMUSG00000111549.1 ENSMUSG00000111549 ENSMUST00000215235 Gm48172 processed_pseudogene Interval_93054 chr2 69851588 69851815 + 0 NA Intergenic Intergenic -9861 ENSMUSG00000068882.13 ENSMUSG00000068882 ENSMUST00000132603 Ssb protein_coding Interval_161872 chr8 123343242 123343754 + 0 NA intron (ENSMUSG00000010154.7, intron 1 of 14) protein_coding-intron (ENSMUSG00000010154.7, intron 1 of 14) -6753 ENSMUSG00000010154.7 ENSMUSG00000010154 ENSMUST00000212404 Spire2 protein_coding Interval_132561 chr5 146334574 146335160 + 0 NA Intergenic Intergenic 48691 ENSMUSG00000029635.15 ENSMUSG00000029635 ENSMUST00000160924 Cdk8 protein_coding Interval_87859 chr19 56631725 56631982 + 0 NA Intergenic Intergenic 32758 ENSMUSG00000117890.1 ENSMUSG00000117890 ENSMUST00000237615 Gm32441 lincRNA Interval_61238 chr15 80153092 80153440 + 0 NA intron (ENSMUSG00000022414.8, intron 6 of 10) protein_coding-intron (ENSMUSG00000022414.8, intron 6 of 10) 20139 ENSMUSG00000022414.8 ENSMUSG00000022414 ENSMUST00000229320 Tab1 protein_coding Interval_138027 chr6 84375402 84375983 + 0 NA Intergenic Intergenic 48146 ENSMUSG00000107797.1 ENSMUSG00000107797 ENSMUST00000203521 Gm10445 lincRNA Interval_138948 chr6 93715429 93715950 + 0 NA intron (ENSMUSG00000045095.16, intron 13 of 24) protein_coding-intron (ENSMUSG00000045095.16, intron 12 of 21) -65464 ENSMUSG00000107739.1 ENSMUSG00000107739 ENSMUST00000203479 Gm7812 processed_pseudogene Interval_44328 chr13 43695868 43697188 + 0 NA intron (ENSMUSG00000114121.1, intron 3 of 6) lincRNA-intron (ENSMUSG00000114121.1, intron 3 of 6) 13408 ENSMUSG00000114121.1 ENSMUSG00000114121 ENSMUST00000222349 Gm47728 lincRNA Interval_11361 chr1 181210291 181212687 + 0 NA promoter-TSS (ENSMUSG00000038733.14) protein_coding-promoter-TSS (ENSMUSG00000038733.14) 512 ENSMUSG00000038733.14 ENSMUSG00000038733 ENSMUST00000161531 Wdr26 protein_coding Interval_15375 chr10 45170262 45170746 + 0 NA Intergenic Intergenic -7594 ENSMUSG00000019848.14 ENSMUSG00000019848 ENSMUST00000161803 Popdc3 protein_coding Interval_101493 chr2 181880610 181880879 + 0 NA Intergenic Intergenic -16079 ENSMUSG00000083397.1 ENSMUSG00000083397 ENSMUST00000119395 Gm5466 processed_pseudogene Interval_135014 chr6 34583200 34583485 + 0 NA Intergenic Intergenic 49789 ENSMUSG00000085187.1 ENSMUSG00000085187 ENSMUST00000125185 Gm13860 lincRNA Interval_86146 chr19 37053892 37054324 + 0 NA TTS (ENSMUSG00000039652.16) protein_coding-TTS (ENSMUSG00000039652.16) 93923 ENSMUSG00000040565.8 ENSMUSG00000040565 ENSMUST00000236343 Btaf1 protein_coding Interval_112026 chr4 33316740 33318512 + 0 NA intron (ENSMUSG00000028274.17, intron 1 of 15) protein_coding-intron (ENSMUSG00000028274.17, intron 1 of 15) -7272 ENSMUSG00000028274.17 ENSMUSG00000028274 ENSMUST00000146870 Rngtt protein_coding Interval_73346 chr17 36364380 36364607 + 0 NA TTS (ENSMUSG00000058124.4) protein_coding-TTS (ENSMUSG00000058124.4) 3924 ENSMUSG00000058124.4 ENSMUSG00000058124 ENSMUST00000073546 H2-M10.3 protein_coding Interval_130470 chr5 127954210 127954669 + 0 NA intron (ENSMUSG00000034310.8, intron 4 of 8) protein_coding-intron (ENSMUSG00000034310.8, intron 4 of 8) 75908 ENSMUSG00000085328.2 ENSMUSG00000085328 ENSMUST00000164420 Gm17131 unprocessed_pseudogene Interval_19361 chr10 97925255 97926019 + 0 NA intron (ENSMUSG00000074776.4, intron 1 of 4) lincRNA-intron (ENSMUSG00000074776.4, intron 1 of 4) 41453 ENSMUSG00000074776.4 ENSMUSG00000074776 ENSMUST00000099324 Gm10754 lincRNA Interval_132429 chr5 144877288 144877552 + 0 NA exon (ENSMUSG00000038780.14, exon 18 of 18) protein_coding-exon (ENSMUSG00000038780.14, exon 18 of 18) 19396 ENSMUSG00000098822.1 ENSMUSG00000098822 ENSMUST00000183852 Mir7039 miRNA Interval_156315 chr8 47335868 47337187 + 0 NA intron (ENSMUSG00000038143.16, intron 7 of 7) protein_coding-intron (ENSMUSG00000038143.16, intron 1 of 4) 77310 ENSMUSG00000038143.16 ENSMUSG00000038143 ENSMUST00000181417 Stox2 protein_coding Interval_135660 chr6 42537845 42538876 + 0 NA exon (ENSMUSG00000071494.5, exon 1 of 1) protein_coding-exon (ENSMUSG00000071494.5, exon 1 of 1) 9227 ENSMUSG00000071494.5 ENSMUSG00000071494 ENSMUST00000171307 Olfr455 protein_coding Interval_31081 chr11 98035812 98036396 + 0 NA TTS (ENSMUSG00000017400.10) protein_coding-TTS (ENSMUSG00000017400.10) 6691 ENSMUSG00000098992.1 ENSMUSG00000098992 ENSMUST00000184365 Gm27597 miRNA Interval_142150 chr6 137639111 137639345 + 0 NA intron (ENSMUSG00000015766.14, intron 1 of 3) protein_coding-intron (ENSMUSG00000015766.14, intron 1 of 21) -45653 ENSMUSG00000107878.1 ENSMUSG00000107878 ENSMUST00000203153 Gm44106 TEC Interval_165392 chr9 47333067 47333333 + 0 NA intron (ENSMUSG00000109844.2, intron 2 of 6) lincRNA-intron (ENSMUSG00000109844.2, intron 2 of 5) -62457 ENSMUSG00000109844.2 ENSMUSG00000109844 ENSMUST00000209906 Gm31816 lincRNA Interval_76945 chr17 85100358 85100777 + 0 NA intron (ENSMUSG00000071037.6, intron 2 of 3) protein_coding-intron (ENSMUSG00000071037.6, intron 2 of 10) 9961 ENSMUSG00000071037.6 ENSMUSG00000071037 ENSMUST00000234501 Camkmt protein_coding Interval_117463 chr4 123898911 123899124 + 0 NA Intergenic Intergenic -3405 ENSMUSG00000080993.1 ENSMUSG00000080993 ENSMUST00000121015 Gm12903 processed_pseudogene Interval_115526 chr4 100175318 100175541 + 0 NA intron (ENSMUSG00000035305.5, intron 1 of 8) protein_coding-intron (ENSMUSG00000035305.5, intron 1 of 8) 55808 ENSMUSG00000086385.1 ENSMUSG00000086385 ENSMUST00000134206 Gm12701 sense_intronic Interval_172198 chrX 9003510 9004022 + 0 NA Intergenic Intergenic 6311 ENSMUSG00000083468.1 ENSMUSG00000083468 ENSMUST00000119765 Gm9431 processed_pseudogene Interval_157071 chr8 64954542 64954720 + 0 NA intron (ENSMUSG00000025521.15, intron 1 of 5) protein_coding-intron (ENSMUSG00000025521.15, intron 1 of 5) -4912 ENSMUSG00000025521.15 ENSMUSG00000025521 ENSMUST00000211405 Tmem192 protein_coding Interval_82280 chr18 69924740 69926609 + 0 NA promoter-TSS (ENSMUSG00000038903.13) protein_coding-promoter-TSS (ENSMUSG00000038903.13) 248 ENSMUSG00000038903.13 ENSMUSG00000038903 ENSMUST00000080050 Ccdc68 protein_coding Interval_20227 chr10 116287778 116288849 + 0 NA intron (ENSMUSG00000020154.10, intron 3 of 33) protein_coding-intron (ENSMUSG00000020154.10, intron 3 of 7) 3764 ENSMUSG00000112461.1 ENSMUSG00000112461 ENSMUST00000219933 Gm47625 TEC Interval_99616 chr2 163607505 163608435 + 0 NA TTS (ENSMUSG00000017679.16) protein_coding-TTS (ENSMUSG00000017679.16) 5656 ENSMUSG00000017679.16 ENSMUSG00000017679 ENSMUST00000132904 Ttpal protein_coding Interval_165917 chr9 54646216 54646417 + 0 NA exon (ENSMUSG00000032281.11, exon 2 of 5) protein_coding-exon (ENSMUSG00000032281.11, exon 2 of 5) -3158 ENSMUSG00000032281.11 ENSMUSG00000032281 ENSMUST00000132914 Acsbg1 protein_coding Interval_78799 chr18 20695266 20695537 + 0 NA intron (ENSMUSG00000056124.5, intron 5 of 8) protein_coding-intron (ENSMUSG00000056124.5, intron 5 of 8) -12438 ENSMUSG00000091449.3 ENSMUSG00000091449 ENSMUST00000165229 Gm10269 processed_pseudogene Interval_2017 chr1 35916772 35919016 + 0 NA Intergenic Intergenic 38049 ENSMUSG00000102531.1 ENSMUSG00000102531 ENSMUST00000194261 1110002O04Rik lincRNA Interval_167666 chr9 71706629 71707229 + 0 NA intron (ENSMUSG00000032232.14, intron 7 of 18) protein_coding-intron (ENSMUSG00000032232.14, intron 7 of 18) -75820 ENSMUSG00000032232.14 ENSMUSG00000032232 ENSMUST00000146567 Cgnl1 protein_coding Interval_82633 chr18 75536483 75538732 + 0 NA intron (ENSMUSG00000052928.9, intron 7 of 11) protein_coding-intron (ENSMUSG00000052928.9, intron 7 of 11) 22962 ENSMUSG00000097712.1 ENSMUSG00000097712 ENSMUST00000181913 Gm10532 antisense Interval_74027 chr17 46143604 46144546 + 0 NA exon (ENSMUSG00000023966.8, exon 1 of 5) protein_coding-exon (ENSMUSG00000023966.8, exon 1 of 5) -7280 ENSMUSG00000023966.8 ENSMUSG00000023966 ENSMUST00000152354 Rsph9 protein_coding Interval_115660 chr4 101780275 101780734 + 0 NA TTS (ENSMUSG00000057722.17) protein_coding-TTS (ENSMUSG00000057722.17) 9136 ENSMUSG00000057722.17 ENSMUSG00000057722 ENSMUST00000151733 Lepr protein_coding Interval_38217 chr12 76416920 76418591 + 0 NA intron (ENSMUSG00000052221.8, intron 1 of 5) protein_coding-intron (ENSMUSG00000052221.8, intron 1 of 10) 129 ENSMUSG00000052221.8 ENSMUSG00000052221 ENSMUST00000219251 Ppp1r36 protein_coding Interval_23080 chr11 19784869 19785743 + 0 NA TTS (ENSMUSG00000081820.1) processed_pseudogene-TTS (ENSMUSG00000081820.1) 1654 ENSMUSG00000081820.1 ENSMUSG00000081820 ENSMUST00000120073 Gm12029 processed_pseudogene Interval_84541 chr19 12517877 12518647 + 0 NA exon (ENSMUSG00000086213.2, exon 5 of 5) processed_transcript-exon (ENSMUSG00000086213.2, exon 5 of 5) -1538 ENSMUSG00000114644.1 ENSMUSG00000114644 ENSMUST00000226106 Gm47243 lincRNA Interval_132034 chr5 142415426 142416518 + 0 NA intron (ENSMUSG00000056493.9, intron 1 of 8) protein_coding-intron (ENSMUSG00000056493.9, intron 1 of 8) 14475 ENSMUSG00000056493.9 ENSMUSG00000056493 ENSMUST00000072837 Foxk1 protein_coding Interval_34831 chr12 12351579 12352432 + 0 NA exon (ENSMUSG00000114136.1, exon 5 of 5) antisense-exon (ENSMUSG00000114136.1, exon 5 of 5) 40610 ENSMUSG00000114136.1 ENSMUSG00000114136 ENSMUST00000220545 4921511I17Rik antisense Interval_52397 chr14 45597483 45597771 + 0 NA exon (ENSMUSG00000085913.2, exon 3 of 3) antisense-exon (ENSMUSG00000085913.2, exon 3 of 3) 16439 ENSMUSG00000115148.1 ENSMUSG00000115148 ENSMUST00000227258 Gm49125 TEC Interval_161760 chr8 122594655 122594913 + 0 NA intron (ENSMUSG00000015027.11, intron 9 of 13) protein_coding-intron (ENSMUSG00000015027.11, intron 9 of 13) 2470 ENSMUSG00000110658.1 ENSMUSG00000110658 ENSMUST00000212207 Gm45857 processed_pseudogene Interval_10338 chr1 169600676 169601233 + 0 NA Intergenic Intergenic -4015 ENSMUSG00000103267.1 ENSMUSG00000103267 ENSMUST00000195643 Gm36980 processed_pseudogene Interval_92045 chr2 52868968 52869747 + 0 NA intron (ENSMUSG00000036053.17, intron 1 of 26) protein_coding-intron (ENSMUSG00000036053.17, intron 1 of 26) 11497 ENSMUSG00000036053.17 ENSMUSG00000036053 ENSMUST00000050719 Fmnl2 protein_coding Interval_150084 chr7 105720468 105721544 + 0 NA exon (ENSMUSG00000030882.19, exon 43 of 44) protein_coding-exon (ENSMUSG00000030882.19, exon 43 of 44) 12940 ENSMUSG00000030888.14 ENSMUSG00000030888 ENSMUST00000137902 Rrp8 protein_coding Interval_93228 chr2 71321196 71322038 + 0 NA intron (ENSMUSG00000027010.16, intron 4 of 16) protein_coding-intron (ENSMUSG00000027010.16, intron 2 of 3) 1834 ENSMUSG00000082190.1 ENSMUSG00000082190 ENSMUST00000117993 Gm13641 processed_pseudogene Interval_107375 chr3 107018460 107019175 + 0 NA intron (ENSMUSG00000098108.7, intron 2 of 5) antisense-intron (ENSMUSG00000098108.7, intron 2 of 5) -17352 ENSMUSG00000047959.4 ENSMUSG00000047959 ENSMUST00000052718 Kcna3 protein_coding Interval_58351 chr15 33072897 33073190 + 0 NA intron (ENSMUSG00000115140.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000115140.1, intron 1 of 2) 480 ENSMUSG00000115140.1 ENSMUSG00000115140 ENSMUST00000226619 Gm32764 lincRNA Interval_11300 chr1 180829406 180831172 + 0 NA Intergenic Intergenic -2480 ENSMUSG00000084558.1 ENSMUSG00000084558 ENSMUST00000122609 Gm24836 snRNA Interval_25972 chr11 53258400 53259419 + 0 NA TTS (ENSMUSG00000020361.13) protein_coding-TTS (ENSMUSG00000020361.13) 41502 ENSMUSG00000020361.13 ENSMUSG00000020361 ENSMUST00000151854 Hspa4 protein_coding Interval_166049 chr9 56074974 56075880 + 0 NA Intergenic Intergenic -14549 ENSMUSG00000032322.14 ENSMUSG00000032322 ENSMUST00000132800 Pstpip1 protein_coding Interval_140083 chr6 113942316 113942755 + 0 NA intron (ENSMUSG00000030302.16, intron 2 of 3) protein_coding-intron (ENSMUSG00000030302.16, intron 2 of 21) 4796 ENSMUSG00000087053.1 ENSMUSG00000087053 ENSMUST00000147045 Gm15082 antisense Interval_155843 chr8 40135824 40136116 + 0 NA Intergenic Intergenic 119256 ENSMUSG00000109815.1 ENSMUSG00000109815 ENSMUST00000209880 Gm7082 processed_pseudogene Interval_163099 chr9 15271137 15271515 + 0 NA promoter-TSS (ENSMUSG00000031935.9) protein_coding-promoter-TSS (ENSMUSG00000031935.9) 8577 ENSMUSG00000031935.9 ENSMUSG00000031935 ENSMUST00000216406 Med17 protein_coding Interval_110359 chr3 157407946 157408334 + 0 NA Intergenic Intergenic -1877 ENSMUSG00000104555.1 ENSMUSG00000104555 ENSMUST00000197739 Gm5983 processed_pseudogene Interval_115201 chr4 94385234 94385496 + 0 NA intron (ENSMUSG00000085931.1, intron 1 of 5) lincRNA-intron (ENSMUSG00000085931.1, intron 1 of 5) -10293 ENSMUSG00000081508.1 ENSMUSG00000081508 ENSMUST00000120387 Gm12654 processed_pseudogene Interval_39311 chr12 86614177 86614420 + 0 NA Intergenic Intergenic -36275 ENSMUSG00000113369.1 ENSMUSG00000113369 ENSMUST00000220511 Gm8504 processed_pseudogene Interval_165922 chr9 54698599 54700310 + 0 NA promoter-TSS (ENSMUSG00000032285.15) protein_coding-promoter-TSS (ENSMUSG00000032285.15) -60 ENSMUSG00000032285.15 ENSMUSG00000032285 ENSMUST00000070070 Dnaja4 protein_coding Interval_84485 chr19 11791646 11792370 + 0 NA intron (ENSMUSG00000041488.16, intron 2 of 10) protein_coding-intron (ENSMUSG00000041488.16, intron 2 of 11) 21596 ENSMUSG00000024683.6 ENSMUSG00000024683 ENSMUST00000237728 Mrpl16 protein_coding Interval_1899 chr1 34417309 34418449 + 0 NA exon (ENSMUSG00000101462.2, exon 1 of 1) transcribed_processed_pseudogene-exon (ENSMUSG00000101462.2, exon 1 of 1) 107 ENSMUSG00000101462.2 ENSMUSG00000101462 ENSMUST00000188254 Gm3052 transcribed_processed_pseudogene Interval_87477 chr19 52778368 52778818 + 0 NA Intergenic Intergenic -144649 ENSMUSG00000117896.1 ENSMUSG00000117896 ENSMUST00000237126 AA387883 lincRNA Interval_68395 chr16 75723319 75723520 + 0 NA Intergenic Intergenic 23049 ENSMUSG00000080750.2 ENSMUSG00000080750 ENSMUST00000118757 Gm15553 processed_pseudogene Interval_145104 chr7 30050789 30051809 + 0 NA promoter-TSS (ENSMUSG00000053985.10) protein_coding-promoter-TSS (ENSMUSG00000053985.10) 81 ENSMUSG00000053985.10 ENSMUSG00000053985 ENSMUST00000077787 Zfp14 protein_coding Interval_156336 chr8 47510994 47511341 + 0 NA exon (ENSMUSG00000038102.15, exon 1 of 4) protein_coding-exon (ENSMUSG00000038102.15, exon 1 of 4) 16863 ENSMUSG00000038102.15 ENSMUSG00000038102 ENSMUST00000131551 Trappc11 protein_coding Interval_120776 chr4 150583288 150584466 + 0 NA intron (ENSMUSG00000039852.17, intron 3 of 4) protein_coding-intron (ENSMUSG00000039852.17, intron 6 of 16) -15333 ENSMUSG00000085213.1 ENSMUSG00000085213 ENSMUST00000128800 Gm13091 antisense Interval_123921 chr5 36556488 36558044 + 0 NA intron (ENSMUSG00000029192.17, intron 2 of 2) protein_coding-intron (ENSMUSG00000029192.17, intron 2 of 13) -49604 ENSMUSG00000029192.17 ENSMUSG00000029192 ENSMUST00000147603 Tbc1d14 protein_coding Interval_23071 chr11 19713614 19714952 + 0 NA Intergenic Intergenic -6072 ENSMUSG00000082100.1 ENSMUSG00000082100 ENSMUST00000120291 Glns-ps1 processed_pseudogene Interval_79351 chr18 30962056 30962814 + 0 NA Intergenic Intergenic 250297 ENSMUSG00000057455.12 ENSMUSG00000057455 ENSMUST00000139924 Rit2 protein_coding Interval_125920 chr5 75808399 75809146 + 0 NA Intergenic Intergenic 26873 ENSMUSG00000107061.1 ENSMUSG00000107061 ENSMUST00000201551 Gm19590 lincRNA Interval_160638 chr8 111250322 111250605 + 0 NA intron (ENSMUSG00000003316.14, intron 1 of 25) protein_coding-intron (ENSMUSG00000003316.14, intron 1 of 24) 8753 ENSMUSG00000003316.14 ENSMUSG00000003316 ENSMUST00000003404 Glg1 protein_coding Interval_35350 chr12 20931524 20931792 + 0 NA Intergenic Intergenic -10396 ENSMUSG00000069755.5 ENSMUSG00000069755 ENSMUST00000208744 Zfp125 transcribed_unprocessed_pseudogene Interval_149758 chr7 101308449 101308887 + 0 NA Intergenic Intergenic -6619 ENSMUSG00000047767.17 ENSMUSG00000047767 ENSMUST00000209093 Atg16l2 protein_coding Interval_24060 chr11 29868169 29868465 + 0 NA intron (ENSMUSG00000044072.14, intron 7 of 41) protein_coding-intron (ENSMUSG00000044072.14, intron 7 of 41) 18856 ENSMUSG00000088135.1 ENSMUSG00000088135 ENSMUST00000157510 Gm22588 snoRNA Interval_60202 chr15 67910230 67911870 + 0 NA Intergenic Intergenic 31754 ENSMUSG00000116519.1 ENSMUSG00000116519 ENSMUST00000230045 Gm49409 processed_pseudogene Interval_173329 chrX 79861135 79861940 + 0 NA Intergenic Intergenic 42029 ENSMUSG00000082372.1 ENSMUSG00000082372 ENSMUST00000122221 Gm4772 processed_pseudogene Interval_117204 chr4 120558781 120559145 + 0 NA intron (ENSMUSG00000028633.7, intron 5 of 18) protein_coding-intron (ENSMUSG00000028633.7, intron 5 of 18) -13896 ENSMUSG00000028633.7 ENSMUSG00000028633 ENSMUST00000140891 Ctps protein_coding Interval_172322 chrX 12996668 12996936 + 0 NA Intergenic Intergenic -45249 ENSMUSG00000087424.1 ENSMUSG00000087424 ENSMUST00000130099 5730405O15Rik processed_transcript Interval_142568 chr6 143365781 143366174 + 0 NA Intergenic Intergenic 99420 ENSMUSG00000077241.1 ENSMUSG00000077241 ENSMUST00000104053 Gm23272 snoRNA Interval_92015 chr2 52590954 52591696 + 0 NA intron (ENSMUSG00000017412.15, intron 2 of 13) protein_coding-intron (ENSMUSG00000017412.15, intron 2 of 13) -28429 ENSMUSG00000025201.7 ENSMUSG00000025201 ENSMUST00000183232 Bloc1s2-ps processed_pseudogene Interval_150378 chr7 110024178 110025555 + 0 NA intron (ENSMUSG00000066232.4, intron 1 of 7) protein_coding-intron (ENSMUSG00000066232.4, intron 1 of 24) 1656 ENSMUSG00000064600.1 ENSMUSG00000064600 ENSMUST00000082666 Gm25636 snoRNA Interval_97045 chr2 130755134 130755743 + 0 NA intron (ENSMUSG00000027309.18, intron 20 of 20) protein_coding-intron (ENSMUSG00000027309.18, intron 20 of 36) -15938 ENSMUSG00000027309.18 ENSMUSG00000027309 ENSMUST00000146975 4930402H24Rik protein_coding Interval_172273 chrX 12156011 12156219 + 0 NA intron (ENSMUSG00000040363.15, intron 1 of 4) protein_coding-intron (ENSMUSG00000040363.15, intron 1 of 13) 4231 ENSMUSG00000040363.15 ENSMUSG00000040363 ENSMUST00000209776 Bcor protein_coding Interval_130317 chr5 125634451 125634850 + 0 NA intron (ENSMUSG00000070498.3, intron 1 of 2) protein_coding-intron (ENSMUSG00000070498.3, intron 2 of 8) 102876 ENSMUSG00000070498.3 ENSMUSG00000070498 ENSMUST00000184422 Tmem132b protein_coding Interval_7193 chr1 127676749 127678380 + 0 NA exon (ENSMUSG00000026347.13, exon 1 of 9) protein_coding-exon (ENSMUSG00000026347.13, exon 1 of 9) 1984 ENSMUSG00000026347.13 ENSMUSG00000026347 ENSMUST00000162406 Tmem163 protein_coding Interval_155484 chr8 33858509 33859736 + 0 NA intron (ENSMUSG00000031586.17, intron 4 of 5) protein_coding-intron (ENSMUSG00000031586.17, intron 4 of 7) 26625 ENSMUSG00000098166.1 ENSMUSG00000098166 ENSMUST00000182843 Gm26978 sense_intronic Interval_32838 chr11 111521495 111521677 + 0 NA Intergenic Intergenic 91720 ENSMUSG00000082448.1 ENSMUSG00000082448 ENSMUST00000120443 Gm11676 processed_pseudogene Interval_42274 chr13 11523131 11523560 + 0 NA exon (ENSMUSG00000113799.1, exon 1 of 1) TEC-exon (ENSMUSG00000113799.1, exon 1 of 1) 399 ENSMUSG00000113799.1 ENSMUSG00000113799 ENSMUST00000221403 Gm47487 TEC Interval_30578 chr11 95213573 95214808 + 0 NA Intergenic Intergenic 11442 ENSMUSG00000085992.1 ENSMUSG00000085992 ENSMUST00000150818 Gm11515 lincRNA Interval_19703 chr10 108198118 108198407 + 0 NA intron (ENSMUSG00000019907.10, intron 1 of 24) protein_coding-intron (ENSMUSG00000019907.10, intron 1 of 25) -51332 ENSMUSG00000019907.10 ENSMUSG00000019907 ENSMUST00000219559 Ppp1r12a protein_coding Interval_151849 chr7 127104165 127105183 + 0 NA Intergenic Intergenic 13250 ENSMUSG00000045165.6 ENSMUSG00000045165 ENSMUST00000206102 AI467606 protein_coding Interval_161343 chr8 119861865 119862862 + 0 NA promoter-TSS (ENSMUSG00000031828.9) protein_coding-promoter-TSS (ENSMUSG00000031828.9) 94 ENSMUSG00000031828.9 ENSMUSG00000031828 ENSMUST00000034287 Klhl36 protein_coding Interval_144871 chr7 28703312 28704245 + 0 NA Intergenic Intergenic 10739 ENSMUSG00000037463.14 ENSMUSG00000037463 ENSMUST00000127368 Fbxo27 protein_coding Interval_154538 chr8 19179635 19181186 + 0 NA intron (ENSMUSG00000110542.1, intron 3 of 4) lincRNA-intron (ENSMUSG00000110542.1, intron 3 of 4) 7605 ENSMUSG00000110542.1 ENSMUSG00000110542 ENSMUST00000212621 Gm39139 lincRNA Interval_44824 chr13 48932984 48933177 + 0 NA intron (ENSMUSG00000038014.7, intron 4 of 17) protein_coding-intron (ENSMUSG00000038014.7, intron 4 of 17) 34937 ENSMUSG00000038014.7 ENSMUSG00000038014 ENSMUST00000060805 Fam120a protein_coding Interval_19982 chr10 111653283 111653888 + 0 NA Intergenic Intergenic -3773 ENSMUSG00000112357.1 ENSMUSG00000112357 ENSMUST00000217989 Gm47864 processed_pseudogene Interval_21530 chr10 129278576 129279388 + 0 NA Intergenic Intergenic -7497 ENSMUSG00000062914.3 ENSMUSG00000062914 ENSMUST00000080313 Olfr777 protein_coding Interval_161816 chr8 122969993 122970192 + 0 NA intron (ENSMUSG00000035569.17, intron 2 of 2) protein_coding-intron (ENSMUSG00000035569.17, intron 2 of 12) 12851 ENSMUSG00000065915.1 ENSMUSG00000065915 ENSMUST00000083981 Gm24445 snRNA Interval_138146 chr6 85475432 85476347 + 0 NA intron (ENSMUSG00000047013.15, intron 9 of 12) protein_coding-intron (ENSMUSG00000047013.15, intron 9 of 12) 14118 ENSMUSG00000030007.8 ENSMUSG00000030007 ENSMUST00000204612 Cct7 protein_coding Interval_45084 chr13 52004141 52004378 + 0 NA Intergenic Intergenic 17668 ENSMUSG00000102173.1 ENSMUSG00000102173 ENSMUST00000192362 Gm37872 TEC Interval_150841 chr7 115471113 115472607 + 0 NA exon (ENSMUSG00000051910.13, exon 17 of 17) protein_coding-exon (ENSMUSG00000051910.13, exon 17 of 17) 299587 ENSMUSG00000099211.1 ENSMUSG00000099211 ENSMUST00000183778 Gm27684 miRNA Interval_169668 chr9 100043292 100043725 + 0 NA Intergenic Intergenic 19860 ENSMUSG00000101584.2 ENSMUSG00000101584 ENSMUST00000215896 4930519F24Rik lincRNA Interval_119557 chr4 138361410 138361758 + 0 NA intron (ENSMUSG00000028755.3, intron 1 of 3) protein_coding-intron (ENSMUSG00000028755.3, intron 1 of 3) -17935 ENSMUSG00000028755.3 ENSMUSG00000028755 ENSMUST00000030535 Cda protein_coding Interval_102753 chr3 30805766 30806066 + 0 NA intron (ENSMUSG00000027706.8, intron 3 of 7) protein_coding-intron (ENSMUSG00000027706.8, intron 3 of 7) -12352 ENSMUSG00000097786.3 ENSMUSG00000097786 ENSMUST00000180833 4933429H19Rik antisense Interval_125734 chr5 73669326 73669675 + 0 NA exon (ENSMUSG00000029155.16, exon 6 of 9) protein_coding-exon (ENSMUSG00000029155.16, exon 6 of 9) 10239 ENSMUSG00000029155.16 ENSMUSG00000029155 ENSMUST00000178631 Spata18 protein_coding Interval_112392 chr4 41021287 41021563 + 0 NA promoter-TSS (ENSMUSG00000028423.15) protein_coding-promoter-TSS (ENSMUSG00000028423.15) 14885 ENSMUSG00000028427.13 ENSMUSG00000028427 ENSMUST00000149517 Aqp7 protein_coding Interval_123428 chr5 32453219 32453582 + 0 NA Intergenic Intergenic -5822 ENSMUSG00000014956.15 ENSMUSG00000014956 ENSMUST00000201880 Ppp1cb protein_coding Interval_92577 chr2 60827133 60827574 + 0 NA intron (ENSMUSG00000026970.16, intron 2 of 14) protein_coding-intron (ENSMUSG00000026970.16, intron 2 of 13) 54085 ENSMUSG00000026970.16 ENSMUSG00000026970 ENSMUST00000128866 Rbms1 protein_coding Interval_123764 chr5 35348706 35349547 + 0 NA Intergenic Intergenic -12427 ENSMUSG00000106762.3 ENSMUSG00000106762 ENSMUST00000201921 4930478P22Rik lincRNA Interval_85371 chr19 25300155 25301373 + 0 NA intron (ENSMUSG00000032702.16, intron 2 of 13) protein_coding-intron (ENSMUSG00000032702.16, intron 2 of 13) 46439 ENSMUSG00000118238.1 ENSMUSG00000118238 ENSMUST00000235913 Gm34432 processed_pseudogene Interval_56229 chr14 114061002 114062375 + 0 NA Intergenic Intergenic -110755 ENSMUSG00000115572.1 ENSMUSG00000115572 ENSMUST00000227752 Gm18369 processed_pseudogene Interval_3334 chr1 57002776 57003116 + 0 NA intron (ENSMUSG00000087022.4, intron 2 of 4) processed_transcript-intron (ENSMUSG00000087022.4, intron 2 of 4) -3671 ENSMUSG00000094128.1 ENSMUSG00000094128 ENSMUST00000179712 Gm23943 miRNA Interval_158551 chr8 84413977 84416029 + 0 NA promoter-TSS (ENSMUSG00000034656.18) protein_coding-promoter-TSS (ENSMUSG00000034656.18) -34422 ENSMUSG00000064392.1 ENSMUSG00000064392 ENSMUST00000082458 Gm23626 snoRNA Interval_72130 chr17 28204296 28204807 + 0 NA exon (ENSMUSG00000024220.14, exon 14 of 15) protein_coding-exon (ENSMUSG00000024220.14, exon 14 of 15) -3275 ENSMUSG00000002257.8 ENSMUSG00000002257 ENSMUST00000233534 Def6 protein_coding Interval_149560 chr7 99573020 99573384 + 0 NA intron (ENSMUSG00000018909.15, intron 1 of 4) protein_coding-intron (ENSMUSG00000018909.15, intron 1 of 14) -2362 ENSMUSG00000108850.1 ENSMUSG00000108850 ENSMUST00000207191 Gm44914 TEC Interval_127269 chr5 102013531 102015693 + 0 NA intron (ENSMUSG00000043940.15, intron 2 of 15) protein_coding-intron (ENSMUSG00000043940.15, intron 2 of 66) -33054 ENSMUSG00000043940.15 ENSMUSG00000043940 ENSMUST00000172512 Wdfy3 protein_coding Interval_167674 chr9 71796911 71797940 + 0 NA Intergenic Intergenic 30112 ENSMUSG00000099220.1 ENSMUSG00000099220 ENSMUST00000183453 Gm27220 processed_pseudogene Interval_124484 chr5 48773176 48774306 + 0 NA intron (ENSMUSG00000029088.16, intron 1 of 8) protein_coding-intron (ENSMUSG00000029088.16, intron 1 of 8) 18225 ENSMUSG00000105454.1 ENSMUSG00000105454 ENSMUST00000198760 Gm43830 TEC Interval_38903 chr12 83706853 83707116 + 0 NA intron (ENSMUSG00000019969.14, intron 2 of 3) protein_coding-intron (ENSMUSG00000019969.14, intron 3 of 11) 18796 ENSMUSG00000019969.14 ENSMUSG00000019969 ENSMUST00000221072 Psen1 protein_coding Interval_172306 chrX 12822578 12823424 + 0 NA Intergenic Intergenic 47361 ENSMUSG00000077858.1 ENSMUSG00000077858 ENSMUST00000104666 Gm25063 miRNA Interval_73736 chr17 43083643 43083930 + 0 NA intron (ENSMUSG00000023915.5, intron 4 of 5) protein_coding-intron (ENSMUSG00000023915.5, intron 4 of 5) 67218 ENSMUSG00000023915.5 ENSMUSG00000023915 ENSMUST00000233482 Tnfrsf21 protein_coding Interval_16242 chr10 61657357 61658204 + 0 NA intron (ENSMUSG00000020089.8, intron 2 of 10) protein_coding-intron (ENSMUSG00000020089.8, intron 2 of 10) -5909 ENSMUSG00000020089.8 ENSMUSG00000020089 ENSMUST00000162028 Ppa1 protein_coding Interval_8139 chr1 135967433 135968017 + 0 NA exon (ENSMUSG00000051985.12, exon 15 of 27) protein_coding-exon (ENSMUSG00000051985.12, exon 15 of 27) 38617 ENSMUSG00000051985.12 ENSMUSG00000051985 ENSMUST00000124134 Igfn1 protein_coding Interval_94046 chr2 82476595 82476801 + 0 NA Intergenic Intergenic -30518 ENSMUSG00000080979.3 ENSMUSG00000080979 ENSMUST00000120616 Gm13675 processed_pseudogene Interval_173790 chrX 104252564 104253184 + 0 NA Intergenic Intergenic -51689 ENSMUSG00000046449.15 ENSMUSG00000046449 ENSMUST00000056502 Nexmif protein_coding Interval_64117 chr16 8523581 8525468 + 0 NA intron (ENSMUSG00000057880.12, intron 1 of 2) protein_coding-intron (ENSMUSG00000057880.12, intron 1 of 15) -43783 ENSMUSG00000077557.1 ENSMUSG00000077557 ENSMUST00000104369 Gm23706 snoRNA Interval_19273 chr10 95940115 95941388 + 0 NA promoter-TSS (ENSMUSG00000036499.9) protein_coding-promoter-TSS (ENSMUSG00000036499.9) 101 ENSMUSG00000036499.9 ENSMUSG00000036499 ENSMUST00000218517 Eea1 protein_coding Interval_158628 chr8 84853745 84854749 + 0 NA Intergenic Intergenic -2773 ENSMUSG00000003808.18 ENSMUSG00000003808 ENSMUST00000141480 Farsa protein_coding Interval_69592 chr16 94493939 94495250 + 0 NA intron (ENSMUSG00000116589.1, intron 1 of 1) antisense-intron (ENSMUSG00000116589.1, intron 1 of 1) 5817 ENSMUSG00000116589.1 ENSMUSG00000116589 ENSMUST00000210205 Gm31323 antisense Interval_38607 chr12 80486071 80487841 + 0 NA intron (ENSMUSG00000032705.9, intron 4 of 8) protein_coding-intron (ENSMUSG00000032705.9, intron 4 of 8) -3934 ENSMUSG00000032705.9 ENSMUSG00000032705 ENSMUST00000219757 Exd2 protein_coding Interval_15980 chr10 59846246 59846698 + 0 NA intron (ENSMUSG00000020111.15, intron 10 of 12) protein_coding-intron (ENSMUSG00000020111.15, intron 12 of 13) 25210 ENSMUSG00000112673.1 ENSMUSG00000112673 ENSMUST00000219498 Gm7413 processed_pseudogene Interval_18092 chr10 82275325 82275690 + 0 NA Intergenic Intergenic -8633 ENSMUSG00000111930.1 ENSMUSG00000111930 ENSMUST00000219873 Gm47382 processed_pseudogene Interval_70604 chr17 12242565 12243324 + 0 NA intron (ENSMUSG00000014426.9, intron 16 of 26) protein_coding-intron (ENSMUSG00000014426.9, intron 16 of 26) -37173 ENSMUSG00000117325.1 ENSMUSG00000117325 ENSMUST00000233669 Gm49962 processed_pseudogene Interval_22795 chr11 15760786 15761395 + 0 NA Intergenic Intergenic -276703 ENSMUSG00000104323.1 ENSMUSG00000104323 ENSMUST00000193500 Gm37319 TEC Interval_45751 chr13 57674384 57675139 + 0 NA intron (ENSMUSG00000056222.15, intron 4 of 10) protein_coding-intron (ENSMUSG00000056222.15, intron 2 of 9) 233571 ENSMUSG00000056222.15 ENSMUSG00000056222 ENSMUST00000185905 Spock1 protein_coding Interval_66126 chr16 31794447 31794631 + 0 NA intron (ENSMUSG00000022770.17, intron 10 of 24) protein_coding-intron (ENSMUSG00000022770.17, intron 10 of 24) 18072 ENSMUSG00000116778.1 ENSMUSG00000116778 ENSMUST00000231752 Gm49713 processed_pseudogene Interval_43881 chr13 37830904 37831288 + 0 NA intron (ENSMUSG00000039087.17, intron 1 of 9) protein_coding-intron (ENSMUSG00000039087.17, intron 1 of 9) -31306 ENSMUSG00000114370.1 ENSMUSG00000114370 ENSMUST00000224624 Gm46411 antisense Interval_160616 chr8 111067460 111068108 + 0 NA intron (ENSMUSG00000033633.15, intron 13 of 18) protein_coding-intron (ENSMUSG00000033633.15, intron 13 of 18) -3376 ENSMUSG00000118613.1 ENSMUSG00000118613 ENSMUST00000214924 AC093451.1 unitary_pseudogene Interval_45955 chr13 59632281 59634068 + 0 NA intron (ENSMUSG00000021555.15, intron 1 of 1) protein_coding-intron (ENSMUSG00000021555.15, intron 22 of 22) 29865 ENSMUSG00000114535.1 ENSMUSG00000114535 ENSMUST00000225230 Gm47246 TEC Interval_96798 chr2 128373186 128374327 + 0 NA intron (ENSMUSG00000074813.14, intron 2 of 2) lincRNA-intron (ENSMUSG00000074813.14, intron 2 of 2) -49898 ENSMUSG00000079053.3 ENSMUSG00000079053 ENSMUST00000131961 Gm14010 lincRNA Interval_94929 chr2 101901308 101901651 + 0 NA exon (ENSMUSG00000027163.13, exon 6 of 6) protein_coding-exon (ENSMUSG00000027163.13, exon 6 of 6) 15216 ENSMUSG00000027163.13 ENSMUSG00000027163 ENSMUST00000156799 Commd9 protein_coding Interval_9673 chr1 160935464 160935729 + 0 NA intron (ENSMUSG00000040423.11, intron 2 of 20) protein_coding-intron (ENSMUSG00000040423.11, intron 1 of 18) 20272 ENSMUSG00000103739.1 ENSMUSG00000103739 ENSMUST00000195401 Gm37653 TEC Interval_115514 chr4 99613920 99614327 + 0 NA Intergenic Intergenic 2399 ENSMUSG00000083698.1 ENSMUSG00000083698 ENSMUST00000119752 Gm12687 processed_pseudogene Interval_26961 chr11 61882219 61882606 + 0 NA intron (ENSMUSG00000047804.15, intron 12 of 14) protein_coding-intron (ENSMUSG00000047804.15, intron 12 of 14) -14354 ENSMUSG00000072847.4 ENSMUSG00000072847 ENSMUST00000148413 A530017D24Rik lincRNA Interval_63974 chr16 4938738 4939953 + 0 NA exon (ENSMUSG00000022516.10, exon 1 of 2) protein_coding-exon (ENSMUSG00000022516.10, exon 1 of 2) 288 ENSMUSG00000097397.2 ENSMUSG00000097397 ENSMUST00000181498 Gm16861 antisense Interval_86447 chr19 40575000 40575371 + 0 NA intron (ENSMUSG00000025007.13, intron 3 of 3) protein_coding-intron (ENSMUSG00000025007.13, intron 6 of 18) 13199 ENSMUSG00000025007.13 ENSMUSG00000025007 ENSMUST00000175932 Aldh18a1 protein_coding Interval_92450 chr2 59785457 59786040 + 0 NA TTS (ENSMUSG00000035168.16) protein_coding-TTS (ENSMUSG00000035168.16) -20320 ENSMUSG00000035168.16 ENSMUSG00000035168 ENSMUST00000147650 Tanc1 protein_coding Interval_120697 chr4 150157629 150158576 + 0 NA exon (ENSMUSG00000062064.6, exon 6 of 12) protein_coding-exon (ENSMUSG00000062064.6, exon 6 of 12) 274 ENSMUSG00000062064.6 ENSMUSG00000062064 ENSMUST00000133379 Slc2a7 protein_coding Interval_47848 chr13 93757238 93758357 + 0 NA Intergenic Intergenic -13899 ENSMUSG00000042082.7 ENSMUSG00000042082 ENSMUST00000220652 Arsb protein_coding Interval_46612 chr13 67572232 67573922 + 0 NA Intergenic Intergenic -19247 ENSMUSG00000095432.9 ENSMUSG00000095432 ENSMUST00000053289 Zfp748 protein_coding Interval_79360 chr18 31187634 31190217 + 0 NA intron (ENSMUSG00000057455.12, intron 2 of 3) protein_coding-intron (ENSMUSG00000057455.12, intron 2 of 3) 23807 ENSMUSG00000057455.12 ENSMUSG00000057455 ENSMUST00000139924 Rit2 protein_coding Interval_107657 chr3 109520923 109521281 + 0 NA intron (ENSMUSG00000033721.16, intron 11 of 16) protein_coding-intron (ENSMUSG00000033721.16, intron 11 of 26) -126422 ENSMUSG00000033721.16 ENSMUSG00000033721 ENSMUST00000148866 Vav3 protein_coding Interval_142434 chr6 142219993 142220246 + 0 NA Intergenic Intergenic -11598 ENSMUSG00000079262.3 ENSMUSG00000079262 ENSMUST00000174455 Slco1a6 protein_coding Interval_102067 chr3 16410043 16410467 + 0 NA Intergenic Intergenic 227019 ENSMUSG00000047213.14 ENSMUSG00000047213 ENSMUST00000108346 Ythdf3 protein_coding Interval_47523 chr13 86287786 86288880 + 0 NA Intergenic Intergenic 52506 ENSMUSG00000098152.1 ENSMUSG00000098152 ENSMUST00000182392 Gm27025 processed_pseudogene Interval_170864 chr9 111314207 111314538 + 0 NA intron (ENSMUSG00000062296.8, intron 1 of 8) protein_coding-intron (ENSMUSG00000062296.8, intron 1 of 21) 40270 ENSMUSG00000046785.8 ENSMUSG00000046785 ENSMUST00000200053 Epm2aip1 protein_coding Interval_63317 chr15 100277655 100278114 + 0 NA Intergenic Intergenic -2957 ENSMUSG00000045631.10 ENSMUSG00000045631 ENSMUST00000230901 Tmprss12 protein_coding Interval_28798 chr11 78386362 78386602 + 0 NA promoter-TSS (ENSMUSG00000002057.4) protein_coding-promoter-TSS (ENSMUSG00000002057.4) 76 ENSMUSG00000002057.4 ENSMUSG00000002057 ENSMUST00000108294 Foxn1 protein_coding Interval_63237 chr15 99865150 99866200 + 0 NA intron (ENSMUSG00000023022.14, intron 1 of 1) protein_coding-intron (ENSMUSG00000023022.14, intron 1 of 10) 8996 ENSMUSG00000023022.14 ENSMUSG00000023022 ENSMUST00000171450 Lima1 protein_coding Interval_158827 chr8 86901599 86903926 + 0 NA intron (ENSMUSG00000098534.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000098534.1, intron 1 of 2) 309 ENSMUSG00000098534.1 ENSMUSG00000098534 ENSMUST00000183752 Gm27167 lincRNA Interval_162694 chr9 7871505 7873910 + 0 NA intron (ENSMUSG00000032000.17, intron 1 of 1) protein_coding-intron (ENSMUSG00000032000.17, intron 1 of 8) -12381 ENSMUSG00000032000.17 ENSMUSG00000032000 ENSMUST00000159672 Birc3 protein_coding Interval_95894 chr2 118155986 118156277 + 0 NA intron (ENSMUSG00000027344.14, intron 10 of 11) protein_coding-intron (ENSMUSG00000027344.14, intron 10 of 11) -32084 ENSMUSG00000101859.1 ENSMUSG00000101859 ENSMUST00000190311 Gm29233 lincRNA Interval_155470 chr8 33797047 33798323 + 0 NA promoter-TSS (ENSMUSG00000031586.17) protein_coding-promoter-TSS (ENSMUSG00000031586.17) -15518 ENSMUSG00000097442.1 ENSMUSG00000097442 ENSMUST00000181120 Gm26632 antisense Interval_4316 chr1 72676604 72677655 + 0 NA intron (ENSMUSG00000039342.5, intron 7 of 22) protein_coding-intron (ENSMUSG00000039342.5, intron 8 of 23) -15735 ENSMUSG00000110487.1 ENSMUSG00000110487 ENSMUST00000211962 Gm18035 processed_pseudogene Interval_138835 chr6 92406834 92408334 + 0 NA intron (ENSMUSG00000030020.13, intron 7 of 7) protein_coding-intron (ENSMUSG00000030020.13, intron 8 of 8) -126191 ENSMUSG00000108279.1 ENSMUSG00000108279 ENSMUST00000203008 Gm44024 processed_pseudogene Interval_88936 chr2 13206254 13207411 + 0 NA intron (ENSMUSG00000026727.10, intron 8 of 8) protein_coding-intron (ENSMUSG00000026727.10, intron 7 of 8) -19996 ENSMUSG00000099246.1 ENSMUSG00000099246 ENSMUST00000184950 Gm27540 misc_RNA Interval_11008 chr1 178344895 178345706 + 0 NA Intergenic Intergenic 5699 ENSMUSG00000104279.1 ENSMUSG00000104279 ENSMUST00000194245 Gm38300 TEC Interval_84604 chr19 14308426 14308741 + 0 NA Intergenic Intergenic 286956 ENSMUSG00000024642.17 ENSMUSG00000024642 ENSMUST00000235975 Tle4 protein_coding Interval_151966 chr7 127850193 127851895 + 0 NA Intergenic Intergenic 9066 ENSMUSG00000030805.14 ENSMUSG00000030805 ENSMUST00000125861 Stx4a protein_coding Interval_149239 chr7 96554164 96554987 + 0 NA intron (ENSMUSG00000048078.16, intron 5 of 32) protein_coding-intron (ENSMUSG00000048078.16, intron 6 of 32) 74494 ENSMUSG00000085792.2 ENSMUSG00000085792 ENSMUST00000155217 Gm15414 antisense Interval_126176 chr5 81518928 81520982 + 0 NA intron (ENSMUSG00000037605.16, intron 8 of 12) protein_coding-intron (ENSMUSG00000037605.16, intron 6 of 24) -15771 ENSMUSG00000107375.1 ENSMUSG00000107375 ENSMUST00000200696 Gm43084 TEC Interval_684 chr1 9865457 9865810 + 0 NA TTS (ENSMUSG00000025915.14) protein_coding-TTS (ENSMUSG00000025915.14) -17834 ENSMUSG00000025915.14 ENSMUSG00000025915 ENSMUST00000188486 Sgk3 protein_coding Interval_169904 chr9 102852493 102852784 + 0 NA TTS (ENSMUSG00000110877.1) TEC-TTS (ENSMUSG00000110877.1) 803 ENSMUSG00000110877.1 ENSMUSG00000110877 ENSMUST00000214076 Gm47427 TEC Interval_30675 chr11 95823748 95825051 + 0 NA promoter-TSS (ENSMUSG00000050860.6) protein_coding-promoter-TSS (ENSMUSG00000050860.6) -6364 ENSMUSG00000050860.6 ENSMUSG00000050860 ENSMUST00000176538 Phospho1 protein_coding Interval_73852 chr17 44618092 44618933 + 0 NA intron (ENSMUSG00000039153.17, intron 3 of 4) protein_coding-intron (ENSMUSG00000039153.17, intron 6 of 7) 22631 ENSMUSG00000070209.1 ENSMUSG00000070209 ENSMUST00000093699 n-R5s27 rRNA Interval_22129 chr11 6509980 6510350 + 0 NA exon (ENSMUSG00000020437.12, exon 17 of 22) protein_coding-exon (ENSMUSG00000020437.12, exon 17 of 22) 10793 ENSMUSG00000020437.12 ENSMUSG00000020437 ENSMUST00000134489 Myo1g protein_coding Interval_117186 chr4 120359966 120360769 + 0 NA Intergenic Intergenic -45014 ENSMUSG00000000085.16 ENSMUSG00000000085 ENSMUST00000133169 Scmh1 protein_coding Interval_23869 chr11 27347484 27347734 + 0 NA Intergenic Intergenic -28631 ENSMUSG00000088438.1 ENSMUSG00000088438 ENSMUST00000157813 Gm25387 snoRNA Interval_165791 chr9 53125753 53126097 + 0 NA intron (ENSMUSG00000053289.8, intron 16 of 17) protein_coding-intron (ENSMUSG00000053289.8, intron 16 of 17) -38263 ENSMUSG00000111693.1 ENSMUSG00000111693 ENSMUST00000213563 Gm47986 processed_pseudogene Interval_21057 chr10 125673617 125674107 + 0 NA Intergenic Intergenic 161331 ENSMUSG00000112100.1 ENSMUSG00000112100 ENSMUST00000219250 Gm9102 processed_pseudogene Interval_55408 chr14 86810699 86811019 + 0 NA intron (ENSMUSG00000022021.14, intron 24 of 26) protein_coding-intron (ENSMUSG00000022021.14, intron 24 of 27) -103674 ENSMUSG00000115306.1 ENSMUSG00000115306 ENSMUST00000226731 Gm49159 TEC Interval_126983 chr5 99036152 99037970 + 0 NA promoter-TSS (ENSMUSG00000029334.14) protein_coding-promoter-TSS (ENSMUSG00000029334.14) -14839 ENSMUSG00000089659.2 ENSMUSG00000089659 ENSMUST00000160819 Gm3470 processed_pseudogene Interval_3841 chr1 63484616 63485252 + 0 NA intron (ENSMUSG00000025964.15, intron 2 of 9) protein_coding-intron (ENSMUSG00000025964.15, intron 3 of 25) 14315 ENSMUSG00000025964.15 ENSMUSG00000025964 ENSMUST00000141545 Adam23 protein_coding Interval_23803 chr11 26416736 26417047 + 0 NA intron (ENSMUSG00000004018.9, intron 4 of 4) protein_coding-intron (ENSMUSG00000004018.9, intron 5 of 13) 7684 ENSMUSG00000081811.1 ENSMUSG00000081811 ENSMUST00000118404 Gm12713 processed_pseudogene Interval_5055 chr1 84720359 84721688 + 0 NA TTS (ENSMUSG00000026219.14) protein_coding-TTS (ENSMUSG00000026219.14) 7853 ENSMUSG00000026219.14 ENSMUSG00000026219 ENSMUST00000187818 Trip12 protein_coding Interval_110609 chr4 4636431 4637010 + 0 NA Intergenic Intergenic -92853 ENSMUSG00000095971.1 ENSMUSG00000095971 ENSMUST00000180325 Gm26436 snoRNA Interval_63502 chr15 101497155 101497651 + 0 NA Intergenic Intergenic -6312 ENSMUSG00000116107.1 ENSMUSG00000116107 ENSMUST00000229735 Gm49423 processed_pseudogene Interval_49285 chr13 110248181 110248814 + 0 NA intron (ENSMUSG00000021700.10, intron 2 of 3) protein_coding-intron (ENSMUSG00000021700.10, intron 2 of 4) 31653 ENSMUSG00000021700.10 ENSMUSG00000021700 ENSMUST00000226040 Rab3c protein_coding Interval_96707 chr2 127301735 127302157 + 0 NA Intergenic Intergenic 9835 ENSMUSG00000027367.16 ENSMUSG00000027367 ENSMUST00000154549 Stard7 protein_coding Interval_15300 chr10 44325535 44326594 + 0 NA intron (ENSMUSG00000038160.7, intron 6 of 7) protein_coding-intron (ENSMUSG00000038160.7, intron 6 of 7) -33612 ENSMUSG00000089260.1 ENSMUSG00000089260 ENSMUST00000158635 Mir1929 miRNA Interval_95411 chr2 108790404 108790724 + 0 NA Intergenic Intergenic -56362 ENSMUSG00000083697.1 ENSMUSG00000083697 ENSMUST00000118202 Gm13914 processed_pseudogene Interval_97673 chr2 142608760 142609336 + 0 NA Intergenic Intergenic 32120 ENSMUSG00000083215.3 ENSMUSG00000083215 ENSMUST00000119377 Rbmx2-ps processed_pseudogene Interval_160364 chr8 108759499 108760197 + 0 NA intron (ENSMUSG00000038872.10, intron 1 of 9) protein_coding-intron (ENSMUSG00000038872.10, intron 1 of 9) 22255 ENSMUSG00000104292.1 ENSMUSG00000104292 ENSMUST00000191614 Gm38042 TEC Interval_79533 chr18 33040545 33041883 + 0 NA intron (ENSMUSG00000038128.7, intron 4 of 14) protein_coding-intron (ENSMUSG00000038128.7, intron 1 of 10) -36448 ENSMUSG00000088077.1 ENSMUSG00000088077 ENSMUST00000157452 Gm22814 snRNA Interval_33605 chr11 117459036 117460226 + 0 NA Intergenic Intergenic 22966 ENSMUSG00000110653.1 ENSMUSG00000110653 ENSMUST00000212879 Gm34418 lincRNA Interval_75530 chr17 67810200 67810449 + 0 NA intron (ENSMUSG00000032796.8, intron 52 of 62) protein_coding-intron (ENSMUSG00000032796.8, intron 52 of 62) 40739 ENSMUSG00000090955.1 ENSMUSG00000090955 ENSMUST00000166414 Gm17097 processed_pseudogene Interval_166767 chr9 62509248 62509529 + 0 NA intron (ENSMUSG00000041729.15, intron 1 of 2) protein_coding-intron (ENSMUSG00000041729.15, intron 1 of 11) -5641 ENSMUSG00000084540.1 ENSMUSG00000084540 ENSMUST00000122591 n-R5s84 rRNA Interval_31665 chr11 102129621 102129948 + 0 NA Intergenic Intergenic 5712 ENSMUSG00000082045.4 ENSMUSG00000082045 ENSMUST00000120901 Gm11585 processed_pseudogene Interval_53756 chr14 61537761 61538034 + 0 NA intron (ENSMUSG00000021930.14, intron 3 of 3) protein_coding-intron (ENSMUSG00000021930.14, intron 4 of 4) -5830 ENSMUSG00000115802.1 ENSMUSG00000115802 ENSMUST00000226286 Vmn1r-ps136 unprocessed_pseudogene Interval_63042 chr15 98789557 98793007 + 0 NA intron (ENSMUSG00000022997.9, intron 2 of 3) protein_coding-intron (ENSMUSG00000022997.9, intron 2 of 3) 1425 ENSMUSG00000022997.9 ENSMUSG00000022997 ENSMUST00000023734 Wnt1 protein_coding Interval_27818 chr11 70188586 70190003 + 0 NA Intergenic Intergenic 19984 ENSMUSG00000000318.16 ENSMUSG00000000318 ENSMUST00000153959 Clec10a protein_coding Interval_93402 chr2 72838106 72838998 + 0 NA Intergenic Intergenic -24835 ENSMUSG00000085427.7 ENSMUSG00000085427 ENSMUST00000125746 6430710C18Rik lincRNA Interval_134773 chr6 31372373 31373179 + 0 NA promoter-TSS (ENSMUSG00000086855.1) lincRNA-promoter-TSS (ENSMUSG00000086855.1) -119 ENSMUSG00000086855.1 ENSMUSG00000086855 ENSMUST00000134541 Gm13844 lincRNA Interval_46131 chr13 61904519 61905512 + 0 NA Intergenic Intergenic -12534 ENSMUSG00000113887.1 ENSMUSG00000113887 ENSMUST00000222548 Gm35619 processed_pseudogene Interval_125432 chr5 67057441 67058247 + 0 NA TTS (ENSMUSG00000037736.20) protein_coding-TTS (ENSMUSG00000037736.20) -4052 ENSMUSG00000080601.1 ENSMUSG00000080601 ENSMUST00000116951 Gm23841 miRNA Interval_63814 chr16 3625211 3626240 + 0 NA Intergenic Intergenic 7873 ENSMUSG00000108336.1 ENSMUSG00000108336 ENSMUST00000205891 Olfr163-ps1 unprocessed_pseudogene Interval_53323 chr14 56164728 56164961 + 0 NA TTS (ENSMUSG00000015443.9) protein_coding-TTS (ENSMUSG00000015443.9) -2043 ENSMUSG00000114908.1 ENSMUSG00000114908 ENSMUST00000224928 Gm9547 processed_pseudogene Interval_118585 chr4 132628732 132629044 + 0 NA Intergenic Intergenic -10158 ENSMUSG00000028886.15 ENSMUSG00000028886 ENSMUST00000130833 Eya3 protein_coding Interval_132156 chr5 142999704 143000217 + 0 NA intron (ENSMUSG00000045078.12, intron 15 of 16) protein_coding-intron (ENSMUSG00000045078.12, intron 15 of 16) 39584 ENSMUSG00000029581.14 ENSMUSG00000029581 ENSMUST00000135293 Fscn1 protein_coding Interval_92722 chr2 64226934 64227143 + 0 NA Intergenic Intergenic -129028 ENSMUSG00000075324.13 ENSMUSG00000075324 ENSMUST00000153538 Fign protein_coding Interval_60647 chr15 75900959 75903022 + 0 NA promoter-TSS (ENSMUSG00000055762.16) protein_coding-promoter-TSS (ENSMUSG00000055762.16) 7365 ENSMUSG00000055762.16 ENSMUSG00000055762 ENSMUST00000145764 Eef1d protein_coding Interval_49951 chr13 118762937 118763497 + 0 NA intron (ENSMUSG00000021732.14, intron 1 of 2) protein_coding-intron (ENSMUSG00000021732.14, intron 1 of 2) -47821 ENSMUSG00000086709.1 ENSMUSG00000086709 ENSMUST00000144680 Gm16263 antisense Interval_125755 chr5 73909299 73909662 + 0 NA Intergenic Intergenic -3416 ENSMUSG00000107027.1 ENSMUSG00000107027 ENSMUST00000202487 1700019F05Rik lincRNA Interval_154927 chr8 25108466 25110384 + 0 NA TTS (ENSMUSG00000110148.1) processed_transcript-TTS (ENSMUSG00000110148.1) -4757 ENSMUSG00000109684.1 ENSMUSG00000109684 ENSMUST00000211447 Gm45745 TEC Interval_14560 chr10 35770319 35772183 + 0 NA Intergenic Intergenic -59359 ENSMUSG00000063953.3 ENSMUSG00000063953 ENSMUST00000080898 Amd2 protein_coding Interval_119763 chr4 139789925 139790618 + 0 NA intron (ENSMUSG00000028736.13, intron 4 of 8) protein_coding-intron (ENSMUSG00000028736.13, intron 4 of 8) 42736 ENSMUSG00000028736.13 ENSMUSG00000028736 ENSMUST00000174681 Pax7 protein_coding Interval_47664 chr13 90939211 90939655 + 0 NA intron (ENSMUSG00000021619.6, intron 4 of 6) protein_coding-intron (ENSMUSG00000021619.6, intron 5 of 7) 16216 ENSMUSG00000049517.8 ENSMUSG00000049517 ENSMUST00000224430 Rps23 protein_coding Interval_1444 chr1 23524451 23524945 + 0 NA Intergenic Intergenic 45159 ENSMUSG00000097920.1 ENSMUSG00000097920 ENSMUST00000180769 Gm7784 processed_pseudogene Interval_12468 chr1 193752021 193752978 + 0 NA Intergenic Intergenic -114510 ENSMUSG00000104182.1 ENSMUSG00000104182 ENSMUST00000194272 Gm21362 processed_pseudogene Interval_72824 chr17 32402173 32404180 + 0 NA exon (ENSMUSG00000052142.15, exon 1 of 17) protein_coding-exon (ENSMUSG00000052142.15, exon 1 of 17) 170 ENSMUSG00000117872.1 ENSMUSG00000117872 ENSMUST00000236003 A530088E08Rik antisense Interval_129794 chr5 122390852 122392402 + 0 NA promoter-TSS (ENSMUSG00000029465.14) protein_coding-promoter-TSS (ENSMUSG00000029465.14) -5240 ENSMUSG00000029465.14 ENSMUSG00000029465 ENSMUST00000126247 Arpc3 protein_coding Interval_118343 chr4 130781617 130781864 + 0 NA TTS (ENSMUSG00000028580.15) protein_coding-TTS (ENSMUSG00000028580.15) -4329 ENSMUSG00000086548.1 ENSMUSG00000086548 ENSMUST00000152986 Gm12972 lincRNA Interval_91465 chr2 39077247 39078241 + 0 NA intron (ENSMUSG00000035236.17, intron 6 of 6) protein_coding-intron (ENSMUSG00000035236.17, intron 17 of 17) 21666 ENSMUSG00000035236.17 ENSMUSG00000035236 ENSMUST00000142872 Scai protein_coding Interval_30934 chr11 97282253 97282639 + 0 NA intron (ENSMUSG00000086680.2, intron 2 of 2) antisense-intron (ENSMUSG00000086680.2, intron 2 of 2) -1876 ENSMUSG00000001441.13 ENSMUSG00000001441 ENSMUST00000152546 Npepps protein_coding Interval_119724 chr4 139494544 139494751 + 0 NA Intergenic Intergenic -80073 ENSMUSG00000041025.15 ENSMUSG00000041025 ENSMUST00000174078 Iffo2 protein_coding Interval_87736 chr19 55528534 55528805 + 0 NA intron (ENSMUSG00000024983.10, intron 8 of 8) protein_coding-intron (ENSMUSG00000024983.10, intron 7 of 7) 212342 ENSMUSG00000024983.10 ENSMUSG00000024983 ENSMUST00000224396 Vti1a protein_coding Interval_33611 chr11 117491617 117492502 + 0 NA Intergenic Intergenic 7691 ENSMUSG00000069588.3 ENSMUSG00000069588 ENSMUST00000092394 Gm11733 protein_coding Interval_91661 chr2 46011866 46012361 + 0 NA Intergenic Intergenic 202641 ENSMUSG00000083807.1 ENSMUSG00000083807 ENSMUST00000121515 Gm13466 processed_pseudogene Interval_54271 chr14 67025062 67026220 + 0 NA promoter-TSS (ENSMUSG00000022052.9) protein_coding-promoter-TSS (ENSMUSG00000022052.9) 17888 ENSMUSG00000022052.9 ENSMUSG00000022052 ENSMUST00000225469 Ppp2r2a protein_coding Interval_61761 chr15 83915250 83916100 + 0 NA intron (ENSMUSG00000022441.17, intron 21 of 31) protein_coding-intron (ENSMUSG00000022441.17, intron 4 of 14) 30924 ENSMUSG00000022441.17 ENSMUSG00000022441 ENSMUST00000122836 Efcab6 protein_coding Interval_50194 chr14 9318639 9320598 + 0 NA Intergenic Intergenic -81006 ENSMUSG00000114615.1 ENSMUSG00000114615 ENSMUST00000224264 Gm48370 lincRNA Interval_32480 chr11 107776991 107777265 + 0 NA intron (ENSMUSG00000020723.3, intron 1 of 3) protein_coding-intron (ENSMUSG00000020723.3, intron 1 of 3) -16738 ENSMUSG00000087184.1 ENSMUSG00000087184 ENSMUST00000141271 Gm11650 processed_transcript Interval_155748 chr8 36723915 36724230 + 0 NA intron (ENSMUSG00000031523.16, intron 5 of 17) protein_coding-intron (ENSMUSG00000031523.16, intron 1 of 13) 228364 ENSMUSG00000031523.16 ENSMUSG00000031523 ENSMUST00000179501 Dlc1 protein_coding Interval_97714 chr2 143117273 143118826 + 0 NA Intergenic Intergenic 12290 ENSMUSG00000082903.1 ENSMUSG00000082903 ENSMUST00000117873 Gm14083 processed_pseudogene Interval_146706 chr7 49579096 49579976 + 0 NA intron (ENSMUSG00000052512.17, intron 27 of 38) protein_coding-intron (ENSMUSG00000052512.17, intron 26 of 37) 57313 ENSMUSG00000030507.6 ENSMUSG00000030507 ENSMUST00000032717 Dbx1 protein_coding Interval_79766 chr18 35005582 35006263 + 0 NA intron (ENSMUSG00000118380.1, intron 3 of 3) processed_transcript-intron (ENSMUSG00000118380.1, intron 4 of 5) 22952 ENSMUSG00000118380.1 ENSMUSG00000118380 ENSMUST00000238090 Gm36037 processed_transcript Interval_82383 chr18 73559582 73560346 + 0 NA Intergenic Intergenic -13080 ENSMUSG00000037253.8 ENSMUSG00000037253 ENSMUST00000091852 Mex3c protein_coding Interval_168603 chr9 84056955 84057196 + 0 NA intron (ENSMUSG00000032263.14, intron 1 of 3) protein_coding-intron (ENSMUSG00000032263.14, intron 8 of 10) -32258 ENSMUSG00000111757.1 ENSMUSG00000111757 ENSMUST00000215223 Gm46124 antisense Interval_68252 chr16 71245910 71246529 + 0 NA Intergenic Intergenic -3665 ENSMUSG00000116982.1 ENSMUSG00000116982 ENSMUST00000231541 4930567J20Rik lincRNA Interval_88263 chr19 61308130 61309385 + 0 NA Intergenic Intergenic -3477 ENSMUSG00000118197.1 ENSMUSG00000118197 ENSMUST00000237261 Gm20762 processed_pseudogene Interval_156543 chr8 50529108 50529327 + 0 NA Intergenic Intergenic -11328 ENSMUSG00000109838.1 ENSMUSG00000109838 ENSMUST00000210850 Gm45341 lincRNA Interval_169138 chr9 94091504 94092125 + 0 NA Intergenic Intergenic -47648 ENSMUSG00000111352.1 ENSMUSG00000111352 ENSMUST00000217499 Gm5369 processed_pseudogene Interval_160592 chr8 110911704 110912641 + 0 NA Intergenic Intergenic -9684 ENSMUSG00000033703.9 ENSMUSG00000033703 ENSMUST00000212568 Fcsk protein_coding Interval_106650 chr3 98107456 98107663 + 0 NA intron (ENSMUSG00000027878.11, intron 12 of 33) protein_coding-intron (ENSMUSG00000027878.11, intron 12 of 33) -14029 ENSMUSG00000106427.1 ENSMUSG00000106427 ENSMUST00000200084 Gm42820 TEC Interval_48279 chr13 97639757 97640133 + 0 NA Intergenic Intergenic 30409 ENSMUSG00000114599.1 ENSMUSG00000114599 ENSMUST00000225459 Gm48070 processed_pseudogene Interval_108202 chr3 122464819 122465036 + 0 NA TTS (ENSMUSG00000087743.1) snRNA-TTS (ENSMUSG00000087743.1) 200 ENSMUSG00000087743.1 ENSMUSG00000087743 ENSMUST00000157118 Gm25153 snRNA Interval_151416 chr7 122219256 122220285 + 0 NA exon (ENSMUSG00000030865.4, exon 1 of 7) protein_coding-exon (ENSMUSG00000030865.4, exon 1 of 7) -1803 ENSMUSG00000030865.4 ENSMUSG00000030865 ENSMUST00000160828 Chp2 protein_coding Interval_34694 chr12 8726791 8727416 + 0 NA intron (ENSMUSG00000020594.14, intron 10 of 19) protein_coding-intron (ENSMUSG00000020594.14, intron 10 of 19) 44078 ENSMUSG00000096940.1 ENSMUSG00000096940 ENSMUST00000181803 Gm4755 bidirectional_promoter_lncRNA Interval_90709 chr2 32037455 32037783 + 0 NA intron (ENSMUSG00000001855.15, intron 1 of 7) protein_coding-intron (ENSMUSG00000001855.15, intron 29 of 35) -13327 ENSMUSG00000099075.1 ENSMUSG00000099075 ENSMUST00000184964 Mir7674 miRNA Interval_170762 chr9 110582962 110583241 + 0 NA intron (ENSMUSG00000044791.16, intron 2 of 4) protein_coding-intron (ENSMUSG00000044791.16, intron 12 of 20) 9479 ENSMUSG00000044791.16 ENSMUSG00000044791 ENSMUST00000197260 Setd2 protein_coding Interval_159102 chr8 90642862 90643373 + 0 NA Intergenic Intergenic 31841 ENSMUSG00000109672.1 ENSMUSG00000109672 ENSMUST00000211205 Gm45639 lincRNA Interval_10721 chr1 173462989 173463323 + 0 NA intron (ENSMUSG00000037860.15, intron 3 of 4) protein_coding-intron (ENSMUSG00000037860.15, intron 10 of 11) 7802 ENSMUSG00000037860.15 ENSMUSG00000037860 ENSMUST00000135370 Aim2 protein_coding Interval_126605 chr5 90777219 90778221 + 0 NA Intergenic Intergenic 5207 ENSMUSG00000029373.7 ENSMUSG00000029373 ENSMUST00000201990 Pf4 protein_coding Interval_426 chr1 5153226 5153443 + 0 NA intron (ENSMUSG00000033793.12, intron 12 of 12) protein_coding-intron (ENSMUSG00000033793.12, intron 13 of 13) 70202 ENSMUSG00000033793.12 ENSMUSG00000033793 ENSMUST00000192142 Atp6v1h protein_coding Interval_61669 chr15 83296922 83297279 + 0 NA Intergenic Intergenic 36167 ENSMUSG00000054277.8 ENSMUSG00000054277 ENSMUST00000227511 Arfgap3 protein_coding Interval_74648 chr17 54332167 54332477 + 0 NA Intergenic Intergenic 15271 ENSMUSG00000117006.1 ENSMUSG00000117006 ENSMUST00000233783 Gm9224 processed_pseudogene Interval_103256 chr3 37569302 37570534 + 0 NA intron (ENSMUSG00000027722.14, intron 16 of 16) protein_coding-intron (ENSMUSG00000027722.14, intron 15 of 15) -13415 ENSMUSG00000080723.1 ENSMUSG00000080723 ENSMUST00000119860 Gm12564 processed_pseudogene Interval_127218 chr5 101520825 101521228 + 0 NA Intergenic Intergenic -14697 ENSMUSG00000106610.1 ENSMUSG00000106610 ENSMUST00000199021 Gm43103 processed_pseudogene Interval_112371 chr4 40891256 40891476 + 0 NA Intergenic Intergenic 21989 ENSMUSG00000081309.3 ENSMUSG00000081309 ENSMUST00000117674 Gm12397 processed_pseudogene Interval_142078 chr6 136989788 136990335 + 0 NA Intergenic Intergenic 3465 ENSMUSG00000107734.1 ENSMUSG00000107734 ENSMUST00000203175 Gm30055 TEC Interval_77655 chr17 93611825 93612320 + 0 NA Intergenic Intergenic 68593 ENSMUSG00000117514.1 ENSMUSG00000117514 ENSMUST00000234106 Gm50002 processed_pseudogene Interval_99473 chr2 161990889 161991617 + 0 NA intron (ENSMUSG00000053141.16, intron 7 of 29) protein_coding-intron (ENSMUSG00000053141.16, intron 7 of 30) -191098 ENSMUSG00000053141.16 ENSMUSG00000053141 ENSMUST00000129015 Ptprt protein_coding Interval_70754 chr17 14178578 14179385 + 0 NA Intergenic Intergenic -24747 ENSMUSG00000117185.1 ENSMUSG00000117185 ENSMUST00000232962 Gm34510 antisense Interval_128763 chr5 115140758 115141340 + 0 NA Intergenic Intergenic -6124 ENSMUSG00000046562.5 ENSMUSG00000046562 ENSMUST00000153403 Unc119b protein_coding Interval_50436 chr14 13182672 13182939 + 0 NA intron (ENSMUSG00000051729.12, intron 2 of 3) processed_transcript-intron (ENSMUSG00000051729.12, intron 2 of 3) -12087 ENSMUSG00000051729.12 ENSMUSG00000051729 ENSMUST00000140967 Gm5087 processed_transcript Interval_157010 chr8 64405954 64407035 + 0 NA Intergenic Intergenic 10606 ENSMUSG00000109579.1 ENSMUSG00000109579 ENSMUST00000211285 Gm35521 lincRNA Interval_140020 chr6 113458700 113459152 + 0 NA promoter-TSS (ENSMUSG00000043088.16) protein_coding-promoter-TSS (ENSMUSG00000043088.16) -7434 ENSMUSG00000043088.16 ENSMUSG00000043088 ENSMUST00000205211 Il17re protein_coding Interval_22263 chr11 8429570 8430079 + 0 NA Intergenic Intergenic -45971 ENSMUSG00000083553.1 ENSMUSG00000083553 ENSMUST00000117240 Gm11989 processed_pseudogene Interval_32291 chr11 106713557 106714087 + 0 NA intron (ENSMUSG00000020717.19, intron 2 of 14) protein_coding-intron (ENSMUSG00000020717.19, intron 3 of 15) -37443 ENSMUSG00000040528.15 ENSMUSG00000040528 ENSMUST00000182479 Milr1 protein_coding Interval_116019 chr4 107039238 107039702 + 0 NA TTS (ENSMUSG00000061887.14) protein_coding-TTS (ENSMUSG00000061887.14) 1237 ENSMUSG00000061887.14 ENSMUSG00000061887 ENSMUST00000136487 Ssbp3 protein_coding Interval_14417 chr10 33362660 33362995 + 0 NA intron (ENSMUSG00000019787.9, intron 20 of 37) protein_coding-intron (ENSMUSG00000019787.9, intron 20 of 37) -35052 ENSMUSG00000112855.1 ENSMUSG00000112855 ENSMUST00000220106 Gm47842 processed_pseudogene Interval_12553 chr1 195212480 195213545 + 0 NA Intergenic Intergenic 9754 ENSMUSG00000102236.1 ENSMUSG00000102236 ENSMUST00000192752 Gm37887 TEC Interval_164989 chr9 43724010 43724693 + 0 NA intron (ENSMUSG00000111334.1, intron 1 of 4) processed_transcript-intron (ENSMUSG00000111334.1, intron 1 of 4) 12085 ENSMUSG00000111129.1 ENSMUSG00000111129 ENSMUST00000213140 Gm47542 TEC Interval_34197 chr11 121223826 121224109 + 0 NA TTS (ENSMUSG00000039294.14) protein_coding-TTS (ENSMUSG00000039294.14) 5268 ENSMUSG00000039294.14 ENSMUSG00000039294 ENSMUST00000156214 Cybc1 protein_coding Interval_155403 chr8 33329884 33331344 + 0 NA promoter-TSS (ENSMUSG00000031583.13) protein_coding-promoter-TSS (ENSMUSG00000031583.13) -64 ENSMUSG00000031583.13 ENSMUSG00000031583 ENSMUST00000209293 Wrn protein_coding Interval_45589 chr13 56108806 56109963 + 0 NA intron (ENSMUSG00000015937.15, intron 2 of 3) protein_coding-intron (ENSMUSG00000015937.15, intron 2 of 8) 26977 ENSMUSG00000015937.15 ENSMUSG00000015937 ENSMUST00000154564 Macroh2a1 protein_coding Interval_17036 chr10 70733855 70734739 + 0 NA intron (ENSMUSG00000112607.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000112607.1, intron 1 of 1) 4547 ENSMUSG00000112607.1 ENSMUSG00000112607 ENSMUST00000219486 Gm33979 lincRNA Interval_76052 chr17 74592308 74593165 + 0 NA intron (ENSMUSG00000024073.16, intron 11 of 72) protein_coding-intron (ENSMUSG00000024073.16, intron 11 of 72) 24383 ENSMUSG00000097546.1 ENSMUSG00000097546 ENSMUST00000181387 Gm26749 antisense Interval_167969 chr9 75070495 75072164 + 0 NA promoter-TSS (ENSMUSG00000034593.16) protein_coding-promoter-TSS (ENSMUSG00000034593.16) -57 ENSMUSG00000034593.16 ENSMUSG00000034593 ENSMUST00000153404 Myo5a protein_coding Interval_74443 chr17 50643900 50644382 + 0 NA intron (ENSMUSG00000038910.7, intron 4 of 5) protein_coding-intron (ENSMUSG00000038910.7, intron 4 of 5) 37147 ENSMUSG00000038910.7 ENSMUSG00000038910 ENSMUST00000233823 Plcl2 protein_coding Interval_11977 chr1 187997154 187998271 + 0 NA promoter-TSS (ENSMUSG00000026610.13) protein_coding-promoter-TSS (ENSMUSG00000026610.13) 11278 ENSMUSG00000103577.1 ENSMUSG00000103577 ENSMUST00000195397 9330162B11Rik antisense Interval_107794 chr3 115174289 115174904 + 0 NA Intergenic Intergenic -2547 ENSMUSG00000106510.1 ENSMUSG00000106510 ENSMUST00000198707 Gm18429 processed_pseudogene Interval_559 chr1 7334833 7335808 + 0 NA Intergenic Intergenic 19869 ENSMUSG00000102768.1 ENSMUSG00000102768 ENSMUST00000192649 Gm19002 processed_pseudogene Interval_148005 chr7 77689931 77690268 + 0 NA Intergenic Intergenic 220221 ENSMUSG00000064940.1 ENSMUSG00000064940 ENSMUST00000083006 Gm23239 snRNA Interval_93721 chr2 76125847 76127180 + 0 NA intron (ENSMUSG00000075270.11, intron 6 of 14) protein_coding-intron (ENSMUSG00000075270.11, intron 9 of 19) 88881 ENSMUSG00000075270.11 ENSMUSG00000075270 ENSMUST00000144892 Pde11a protein_coding Interval_100723 chr2 172041810 172043785 + 0 NA exon (ENSMUSG00000067578.3, exon 1 of 3) protein_coding-exon (ENSMUSG00000067578.3, exon 1 of 3) 669 ENSMUSG00000067578.3 ENSMUSG00000067578 ENSMUST00000087950 Cbln4 protein_coding Interval_27903 chr11 70733781 70734473 + 0 NA Intergenic Intergenic 21024 ENSMUSG00000085502.1 ENSMUSG00000085502 ENSMUST00000127333 Gm12320 lincRNA Interval_123806 chr5 35669874 35670895 + 0 NA intron (ENSMUSG00000029096.15, intron 1 of 1) protein_coding-intron (ENSMUSG00000029096.15, intron 2 of 8) 8710 ENSMUSG00000029096.15 ENSMUSG00000029096 ENSMUST00000200810 Htra3 protein_coding Interval_4704 chr1 77456732 77457126 + 0 NA intron (ENSMUSG00000026235.14, intron 2 of 15) protein_coding-intron (ENSMUSG00000026235.14, intron 3 of 17) 39839 ENSMUSG00000099141.1 ENSMUSG00000099141 ENSMUST00000184495 Mir6352 miRNA Interval_64626 chr16 13740697 13741115 + 0 NA Intergenic Intergenic -1702 ENSMUSG00000115907.1 ENSMUSG00000115907 ENSMUST00000229709 Gm49432 lincRNA Interval_167374 chr9 67887109 67888480 + 0 NA intron (ENSMUSG00000035284.10, intron 16 of 26) protein_coding-intron (ENSMUSG00000035284.10, intron 16 of 84) 47382 ENSMUSG00000035284.10 ENSMUSG00000035284 ENSMUST00000215524 Vps13c protein_coding Interval_102449 chr3 26639754 26641021 + 0 NA intron (ENSMUSG00000039335.11, intron 1 of 9) protein_coding-intron (ENSMUSG00000039335.11, intron 1 of 10) 2737 ENSMUSG00000039335.11 ENSMUSG00000039335 ENSMUST00000108305 Spata16 protein_coding Interval_43838 chr13 37498849 37499465 + 0 NA Intergenic Intergenic 8595 ENSMUSG00000114389.1 ENSMUSG00000114389 ENSMUST00000225935 Gm47734 lincRNA Interval_3628 chr1 60082341 60082533 + 0 NA TTS (ENSMUSG00000026019.15) protein_coding-TTS (ENSMUSG00000026019.15) 3325 ENSMUSG00000026019.15 ENSMUSG00000026019 ENSMUST00000133767 Wdr12 protein_coding Interval_168748 chr9 86671322 86671712 + 0 NA intron (ENSMUSG00000032418.15, intron 3 of 13) protein_coding-intron (ENSMUSG00000032418.15, intron 3 of 13) 13691 ENSMUSG00000102259.1 ENSMUSG00000102259 ENSMUST00000193572 Gm38230 TEC Interval_103611 chr3 51179373 51179752 + 0 NA Intergenic Intergenic -52355 ENSMUSG00000103313.1 ENSMUSG00000103313 ENSMUST00000195382 Gm38357 TEC Interval_80133 chr18 37770879 37772172 + 0 NA intron (ENSMUSG00000102428.1, intron 1 of 3) protein_coding-intron (ENSMUSG00000103088.1, intron 1 of 3) 5752 ENSMUSG00000102428.1 ENSMUSG00000102428 ENSMUST00000193045 Pcdhga12 protein_coding Interval_159376 chr8 94167129 94167529 + 0 NA Intergenic Intergenic -5531 ENSMUSG00000031762.7 ENSMUSG00000031762 ENSMUST00000212806 Mt2 protein_coding Interval_12552 chr1 195206669 195207048 + 0 NA Intergenic Intergenic 15908 ENSMUSG00000102236.1 ENSMUSG00000102236 ENSMUST00000192752 Gm37887 TEC Interval_51236 chr14 25448260 25449081 + 0 NA intron (ENSMUSG00000087535.2, intron 1 of 3) lincRNA-intron (ENSMUSG00000114232.1, intron 1 of 1) 7029 ENSMUSG00000114232.1 ENSMUSG00000114232 ENSMUST00000224582 Gm17747 lincRNA Interval_28094 chr11 72770336 72771084 + 0 NA exon (ENSMUSG00000020790.14, exon 25 of 25) protein_coding-exon (ENSMUSG00000020790.14, exon 25 of 25) 25131 ENSMUSG00000057778.14 ENSMUSG00000057778 ENSMUST00000169476 Cyb5d2 protein_coding Interval_11483 chr1 182136829 182138426 + 0 NA Intergenic Intergenic 6928 ENSMUSG00000026511.7 ENSMUSG00000026511 ENSMUST00000193005 Srp9 protein_coding Interval_119112 chr4 135617220 135618541 + 0 NA Intergenic Intergenic -8938 ENSMUSG00000086788.2 ENSMUSG00000086788 ENSMUST00000148529 1700029M20Rik lincRNA Interval_33344 chr11 116041856 116043285 + 0 NA intron (ENSMUSG00000020770.13, intron 1 of 15) protein_coding-intron (ENSMUSG00000020770.13, intron 1 of 15) 12247 ENSMUSG00000020770.13 ENSMUSG00000020770 ENSMUST00000140683 Unk protein_coding Interval_53634 chr14 60405592 60405840 + 0 NA Intergenic Intergenic 27430 ENSMUSG00000021986.9 ENSMUSG00000021986 ENSMUST00000239079 Amer2 protein_coding Interval_47136 chr13 76180035 76180617 + 0 NA promoter-TSS (ENSMUSG00000033991.9) protein_coding-promoter-TSS (ENSMUSG00000033991.9) -18665 ENSMUSG00000114664.1 ENSMUSG00000114664 ENSMUST00000225364 Gm48639 TEC Interval_21466 chr10 128765877 128766133 + 0 NA exon (ENSMUSG00000064030.15, exon 3 of 3) protein_coding-exon (ENSMUSG00000064030.15, exon 3 of 3) 11245 ENSMUSG00000045055.5 ENSMUSG00000045055 ENSMUST00000059546 Rpsa-ps2 processed_pseudogene Interval_79474 chr18 32162530 32163859 + 0 NA promoter-TSS (ENSMUSG00000024383.9) protein_coding-promoter-TSS (ENSMUSG00000024383.9) 101 ENSMUSG00000024383.9 ENSMUSG00000024383 ENSMUST00000096575 Map3k2 protein_coding Interval_18875 chr10 91713822 91714021 + 0 NA Intergenic Intergenic -73031 ENSMUSG00000111782.1 ENSMUSG00000111782 ENSMUST00000216093 Gm47091 processed_pseudogene Interval_156455 chr8 48400600 48401398 + 0 NA intron (ENSMUSG00000031561.16, intron 1 of 2) protein_coding-intron (ENSMUSG00000031561.16, intron 3 of 28) -130014 ENSMUSG00000110480.1 ENSMUSG00000110480 ENSMUST00000212653 Gm32842 processed_pseudogene Interval_55341 chr14 84002310 84002560 + 0 NA Intergenic Intergenic -18472 ENSMUSG00000115282.1 ENSMUSG00000115282 ENSMUST00000227519 Gm49055 processed_pseudogene Interval_69241 chr16 91623401 91623671 + 0 NA promoter-TSS (ENSMUSG00000022962.15) protein_coding-promoter-TSS (ENSMUSG00000022962.15) -519 ENSMUSG00000022962.15 ENSMUSG00000022962 ENSMUST00000231775 Gart protein_coding Interval_135138 chr6 36647902 36649045 + 0 NA Intergenic Intergenic -8207 ENSMUSG00000106872.1 ENSMUSG00000106872 ENSMUST00000201419 Gm2189 processed_pseudogene Interval_166219 chr9 57566665 57568139 + 0 NA intron (ENSMUSG00000040188.10, intron 1 of 2) protein_coding-intron (ENSMUSG00000040188.10, intron 1 of 8) -14448 ENSMUSG00000040188.10 ENSMUSG00000040188 ENSMUST00000216667 Scamp2 protein_coding Interval_113968 chr4 62075196 62075584 + 0 NA Intergenic Intergenic 11871 ENSMUSG00000066154.11 ENSMUSG00000066154 ENSMUST00000107488 Mup3 protein_coding Interval_148533 chr7 82233024 82235063 + 0 NA intron (ENSMUSG00000030638.13, intron 1 of 5) protein_coding-intron (ENSMUSG00000030638.13, intron 1 of 8) 58887 ENSMUSG00000030638.13 ENSMUSG00000030638 ENSMUST00000178526 Sh3gl3 protein_coding Interval_169015 chr9 90204779 90205015 + 0 NA exon (ENSMUSG00000037410.13, exon 13 of 13) protein_coding-exon (ENSMUSG00000037410.13, exon 13 of 13) 16728 ENSMUSG00000081520.1 ENSMUSG00000081520 ENSMUST00000120385 Gm16200 processed_pseudogene Interval_63309 chr15 100248303 100249365 + 0 NA intron (ENSMUSG00000023027.13, intron 3 of 5) protein_coding-intron (ENSMUSG00000023027.13, intron 3 of 6) 16636 ENSMUSG00000023027.13 ENSMUSG00000023027 ENSMUST00000166435 Atf1 protein_coding Interval_23172 chr11 20320215 20321454 + 0 NA intron (ENSMUSG00000020142.12, intron 1 of 7) protein_coding-intron (ENSMUSG00000020142.12, intron 1 of 7) 11879 ENSMUSG00000020142.12 ENSMUSG00000020142 ENSMUST00000004634 Slc1a4 protein_coding Interval_3724 chr1 62325305 62325794 + 0 NA intron (ENSMUSG00000052062.14, intron 16 of 21) protein_coding-intron (ENSMUSG00000052062.14, intron 15 of 21) 78396 ENSMUSG00000102359.1 ENSMUSG00000102359 ENSMUST00000195466 Gm38351 TEC Interval_93611 chr2 74893085 74893766 + 0 NA Intergenic Intergenic -6419 ENSMUSG00000083837.1 ENSMUSG00000083837 ENSMUST00000117183 Gm14427 processed_pseudogene Interval_3328 chr1 56969410 56970042 + 0 NA TTS (ENSMUSG00000038331.15) protein_coding-TTS (ENSMUSG00000038331.15) 146 ENSMUSG00000038331.15 ENSMUSG00000038331 ENSMUST00000177282 Satb2 protein_coding Interval_24713 chr11 36080276 36081214 + 0 NA promoter-TSS (ENSMUSG00000087245.1) antisense-promoter-TSS (ENSMUSG00000087245.1) 81 ENSMUSG00000087245.1 ENSMUSG00000087245 ENSMUST00000147717 Gm12126 antisense Interval_17487 chr10 77199106 77199763 + 0 NA Intergenic Intergenic 59789 ENSMUSG00000078444.3 ENSMUSG00000078444 ENSMUST00000105408 Gm10941 bidirectional_promoter_lncRNA Interval_166896 chr9 63780182 63780387 + 0 NA Intergenic Intergenic 21513 ENSMUSG00000111137.1 ENSMUSG00000111137 ENSMUST00000215986 Gm2553 processed_pseudogene Interval_43751 chr13 36019208 36019846 + 0 NA intron (ENSMUSG00000114407.1, intron 1 of 1) protein_coding-intron (ENSMUSG00000046573.7, intron 2 of 2) 24074 ENSMUSG00000114857.1 ENSMUSG00000114857 ENSMUST00000225071 Gm48770 antisense Interval_154898 chr8 24931059 24931757 + 0 NA intron (ENSMUSG00000037437.18, intron 2 of 8) protein_coding-intron (ENSMUSG00000037437.18, intron 2 of 19) -6892 ENSMUSG00000088736.1 ENSMUSG00000088736 ENSMUST00000158111 Gm23898 snRNA Interval_114498 chr4 81262776 81263843 + 0 NA Intergenic Intergenic 75095 ENSMUSG00000077607.1 ENSMUSG00000077607 ENSMUST00000104419 Gm25803 snoRNA Interval_5930 chr1 93289824 93290365 + 0 NA intron (ENSMUSG00000047793.13, intron 3 of 4) protein_coding-intron (ENSMUSG00000047793.13, intron 29 of 30) 15545 ENSMUSG00000098997.1 ENSMUSG00000098997 ENSMUST00000185062 Mir6901 miRNA Interval_94576 chr2 92388825 92389930 + 0 NA TTS (ENSMUSG00000027223.15) protein_coding-TTS (ENSMUSG00000027223.15) -1931 ENSMUSG00000099093.1 ENSMUSG00000099093 ENSMUST00000183506 Mir7000 miRNA Interval_154604 chr8 22012720 22013672 + 0 NA intron (ENSMUSG00000006567.11, intron 9 of 21) protein_coding-intron (ENSMUSG00000006567.11, intron 8 of 20) 43421 ENSMUSG00000017049.4 ENSMUSG00000017049 ENSMUST00000017193 Ccdc70 protein_coding Interval_59450 chr15 53252026 53252241 + 0 NA intron (ENSMUSG00000061731.9, intron 1 of 10) protein_coding-intron (ENSMUSG00000061731.9, intron 1 of 10) -131786 ENSMUSG00000087805.2 ENSMUSG00000087805 ENSMUST00000157180 Gm27926 snRNA Interval_121358 chr4 155235104 155236207 + 0 NA Intergenic Intergenic -14311 ENSMUSG00000073684.13 ENSMUSG00000073684 ENSMUST00000156404 Faap20 protein_coding Interval_12874 chr10 7153766 7153980 + 0 NA intron (ENSMUSG00000015202.13, intron 3 of 12) protein_coding-intron (ENSMUSG00000015202.13, intron 3 of 12) -18367 ENSMUSG00000015202.13 ENSMUSG00000015202 ENSMUST00000015346 Cnksr3 protein_coding Interval_89533 chr2 21963516 21964501 + 0 NA Intergenic Intergenic -103818 ENSMUSG00000081467.1 ENSMUSG00000081467 ENSMUST00000119183 Gm13337 processed_pseudogene Interval_133924 chr6 15715354 15715753 + 0 NA Intergenic Intergenic -5108 ENSMUSG00000041390.18 ENSMUSG00000041390 ENSMUST00000128849 Mdfic protein_coding Interval_105538 chr3 87508228 87508734 + 0 NA Intergenic Intergenic -17097 ENSMUSG00000003382.18 ENSMUSG00000003382 ENSMUST00000152010 Etv3 protein_coding Interval_139547 chr6 100900504 100901223 + 0 NA Intergenic Intergenic 22293 ENSMUSG00000108074.1 ENSMUSG00000108074 ENSMUST00000205099 4930595O18Rik TEC Interval_161476 chr8 120629937 120630348 + 0 NA intron (ENSMUSG00000097919.1, intron 1 of 3) protein_coding-intron (ENSMUSG00000043687.15, intron 1 of 3) -13808 ENSMUSG00000097500.1 ENSMUSG00000097500 ENSMUST00000181474 Gm26537 antisense Interval_80507 chr18 43034081 43034594 + 0 NA intron (ENSMUSG00000117792.1, intron 2 of 3) protein_coding-intron (ENSMUSG00000024500.20, intron 1 of 8) 36069 ENSMUSG00000094137.1 ENSMUSG00000094137 ENSMUST00000178200 Gm22264 snRNA Interval_44635 chr13 46829983 46830437 + 0 NA intron (ENSMUSG00000021375.11, intron 6 of 25) protein_coding-intron (ENSMUSG00000021375.11, intron 6 of 37) -21153 ENSMUSG00000021375.11 ENSMUSG00000021375 ENSMUST00000224923 Kif13a protein_coding Interval_28404 chr11 75687215 75687813 + 0 NA intron (ENSMUSG00000017776.15, intron 1 of 1) protein_coding-intron (ENSMUSG00000017776.15, intron 1 of 2) 7972 ENSMUSG00000017776.15 ENSMUSG00000017776 ENSMUST00000147718 Crk protein_coding Interval_62560 chr15 94648303 94650070 + 0 NA intron (ENSMUSG00000063296.5, intron 2 of 2) protein_coding-intron (ENSMUSG00000063296.5, intron 2 of 7) 19954 ENSMUSG00000063296.5 ENSMUSG00000063296 ENSMUST00000080141 Tmem117 protein_coding Interval_10782 chr1 174643748 174644002 + 0 NA intron (ENSMUSG00000028354.13, intron 2 of 3) protein_coding-intron (ENSMUSG00000028354.13, intron 6 of 17) 34066 ENSMUSG00000028354.13 ENSMUSG00000028354 ENSMUST00000193905 Fmn2 protein_coding Interval_27365 chr11 66998266 66998797 + 0 NA Intergenic Intergenic -3555 ENSMUSG00000085926.1 ENSMUSG00000085926 ENSMUST00000138819 Gm12299 processed_transcript Interval_68102 chr16 65084348 65084578 + 0 NA intron (ENSMUSG00000050783.5, intron 1 of 2) protein_coding-intron (ENSMUSG00000050783.5, intron 1 of 2) 21391 ENSMUSG00000050783.5 ENSMUSG00000050783 ENSMUST00000063076 Htr1f protein_coding Interval_13777 chr10 21998760 21999066 + 0 NA TTS (ENSMUSG00000019970.15) protein_coding-TTS (ENSMUSG00000019970.15) 20241 ENSMUSG00000019970.15 ENSMUSG00000019970 ENSMUST00000135195 Sgk1 protein_coding Interval_90060 chr2 27630848 27631956 + 0 NA Intergenic Intergenic 90976 ENSMUSG00000085929.1 ENSMUSG00000085929 ENSMUST00000132898 Gm13421 processed_transcript Interval_117534 chr4 124474372 124474784 + 0 NA intron (ENSMUSG00000084757.7, intron 2 of 3) lincRNA-intron (ENSMUSG00000084757.7, intron 2 of 3) -23293 ENSMUSG00000084757.7 ENSMUSG00000084757 ENSMUST00000156566 1700057H15Rik lincRNA Interval_62658 chr15 96011158 96011490 + 0 NA Intergenic Intergenic -17195 ENSMUSG00000115049.1 ENSMUSG00000115049 ENSMUST00000227616 Gm49172 processed_transcript Interval_72687 chr17 31557630 31559692 + 0 NA intron (ENSMUSG00000013562.12, intron 1 of 1) lincRNA-intron (ENSMUSG00000013562.12, intron 2 of 2) 1535 ENSMUSG00000013562.12 ENSMUSG00000013562 ENSMUST00000160270 4833413E03Rik lincRNA Interval_143538 chr7 12318218 12320194 + 0 NA TTS (ENSMUSG00000066804.3) protein_coding-TTS (ENSMUSG00000066804.3) 10275 ENSMUSG00000066804.3 ENSMUSG00000066804 ENSMUST00000086229 Vmn1r83 protein_coding Interval_164137 chr9 31931244 31932325 + 0 NA Intergenic Intergenic 5016 ENSMUSG00000091639.2 ENSMUSG00000091639 ENSMUST00000169182 Gm3756 processed_pseudogene Interval_91466 chr2 39078667 39078929 + 0 NA intron (ENSMUSG00000035236.17, intron 6 of 6) protein_coding-intron (ENSMUSG00000035236.17, intron 17 of 17) 20612 ENSMUSG00000035236.17 ENSMUSG00000035236 ENSMUST00000142872 Scai protein_coding Interval_103128 chr3 35732408 35733278 + 0 NA Intergenic Intergenic -2530 ENSMUSG00000064834.1 ENSMUSG00000064834 ENSMUST00000082900 Gm25696 snRNA Interval_151209 chr7 119672399 119672638 + 0 NA Intergenic Intergenic -17508 ENSMUSG00000047026.9 ENSMUSG00000047026 ENSMUST00000047045 Acsm4 protein_coding Interval_10666 chr1 172543205 172544205 + 0 NA intron (ENSMUSG00000085184.9, intron 1 of 2) protein_coding-intron (ENSMUSG00000026546.16, intron 10 of 11) 14424 ENSMUSG00000085184.9 ENSMUSG00000085184 ENSMUST00000169111 4933439K11Rik processed_transcript Interval_164903 chr9 43000050 43000281 + 0 NA intron (ENSMUSG00000059495.14, intron 19 of 40) protein_coding-intron (ENSMUSG00000059495.14, intron 19 of 41) 26495 ENSMUSG00000059495.14 ENSMUSG00000059495 ENSMUST00000214175 Arhgef12 protein_coding Interval_159182 chr8 91443792 91444109 + 0 NA exon (ENSMUSG00000055932.15, exon 4 of 4) protein_coding-exon (ENSMUSG00000055932.15, exon 4 of 4) -6356 ENSMUSG00000110079.1 ENSMUSG00000110079 ENSMUST00000211232 Gm45292 TEC Interval_43365 chr13 29744147 29744650 + 0 NA intron (ENSMUSG00000006191.17, intron 5 of 10) protein_coding-intron (ENSMUSG00000006191.17, intron 5 of 15) -195885 ENSMUSG00000086893.1 ENSMUSG00000086893 ENSMUST00000144277 Gm11365 antisense Interval_78654 chr18 16468936 16469219 + 0 NA Intergenic Intergenic -194133 ENSMUSG00000063628.2 ENSMUSG00000063628 ENSMUST00000076710 Gm7665 processed_pseudogene Interval_39413 chr12 87265864 87267931 + 0 NA promoter-TSS (ENSMUSG00000021038.17) protein_coding-promoter-TSS (ENSMUSG00000021038.17) 39 ENSMUSG00000106561.1 ENSMUSG00000106561 ENSMUST00000198146 Gm47293 miRNA Interval_62740 chr15 96570318 96570720 + 0 NA TTS (ENSMUSG00000023169.15) protein_coding-TTS (ENSMUSG00000023169.15) 71694 ENSMUSG00000023169.15 ENSMUSG00000023169 ENSMUST00000229253 Slc38a1 protein_coding Interval_140914 chr6 122731934 122732864 + 0 NA exon (ENSMUSG00000003153.10, exon 8 of 10) protein_coding-exon (ENSMUSG00000003153.10, exon 8 of 10) 24910 ENSMUSG00000012396.12 ENSMUSG00000012396 ENSMUST00000012540 Nanog protein_coding Interval_50150 chr14 8295275 8295507 + 0 NA TTS (ENSMUSG00000021750.16) protein_coding-TTS (ENSMUSG00000021750.16) 14404 ENSMUSG00000021750.16 ENSMUSG00000021750 ENSMUST00000137133 Fam107a protein_coding Interval_140169 chr6 114968455 114970164 + 0 NA promoter-TSS (ENSMUSG00000030315.15) protein_coding-promoter-TSS (ENSMUSG00000030315.15) -47493 ENSMUSG00000030315.15 ENSMUSG00000030315 ENSMUST00000204693 Vgll4 protein_coding Interval_41019 chr12 110649263 110649481 + 0 NA exon (ENSMUSG00000018707.13, exon 46 of 77) protein_coding-exon (ENSMUSG00000018707.13, exon 46 of 77) 8848 ENSMUSG00000018707.13 ENSMUSG00000018707 ENSMUST00000166323 Dync1h1 protein_coding Interval_59592 chr15 55687090 55687599 + 0 NA intron (ENSMUSG00000060429.12, intron 3 of 6) protein_coding-intron (ENSMUSG00000060429.12, intron 3 of 6) 69757 ENSMUSG00000022369.13 ENSMUSG00000022369 ENSMUST00000166449 Mtbp protein_coding Interval_34510 chr12 4816860 4818016 + 0 NA promoter-TSS (ENSMUSG00000037361.8) protein_coding-promoter-TSS (ENSMUSG00000037361.8) -123 ENSMUSG00000037361.8 ENSMUSG00000037361 ENSMUST00000218650 Sf3b6 protein_coding Interval_44736 chr13 48075447 48075716 + 0 NA intron (ENSMUSG00000097622.2, intron 1 of 2) antisense-intron (ENSMUSG00000097622.2, intron 1 of 2) 43808 ENSMUSG00000114810.1 ENSMUSG00000114810 ENSMUST00000223995 Gm36101 lincRNA Interval_11188 chr1 179977134 179977712 + 0 NA intron (ENSMUSG00000026490.18, intron 1 of 5) protein_coding-intron (ENSMUSG00000026490.18, intron 1 of 34) 16313 ENSMUSG00000026490.18 ENSMUSG00000026490 ENSMUST00000129754 Cdc42bpa protein_coding Interval_84866 chr19 18292246 18292537 + 0 NA Intergenic Intergenic -86596 ENSMUSG00000117774.1 ENSMUSG00000117774 ENSMUST00000237977 Gm18610 processed_pseudogene Interval_141799 chr6 134599882 134600503 + 0 NA Intergenic Intergenic 7489 ENSMUSG00000107728.1 ENSMUSG00000107728 ENSMUST00000204630 Gm38910 lincRNA Interval_172915 chrX 53715884 53717357 + 0 NA promoter-TSS (ENSMUSG00000085998.8) transcribed_unprocessed_pseudogene-promoter-TSS (ENSMUSG00000085998.8) 153 ENSMUSG00000085998.8 ENSMUSG00000085998 ENSMUST00000208904 AW822252 transcribed_unprocessed_pseudogene Interval_91754 chr2 49278891 49279192 + 0 NA promoter-TSS (ENSMUSG00000036792.12) protein_coding-promoter-TSS (ENSMUSG00000036792.12) -29114 ENSMUSG00000081272.1 ENSMUSG00000081272 ENSMUST00000119733 Ap2m1-ps processed_pseudogene Interval_32538 chr11 108263649 108263856 + 0 NA intron (ENSMUSG00000050965.14, intron 2 of 2) protein_coding-intron (ENSMUSG00000050965.14, intron 2 of 16) 81902 ENSMUSG00000084978.1 ENSMUSG00000084978 ENSMUST00000153899 Gm11655 antisense Interval_33960 chr11 119671384 119673328 + 0 NA intron (ENSMUSG00000025583.15, intron 3 of 32) protein_coding-intron (ENSMUSG00000025583.15, intron 3 of 33) -25726 ENSMUSG00000083870.1 ENSMUSG00000083870 ENSMUST00000121392 Gm11761 processed_pseudogene Interval_50165 chr14 8420890 8421373 + 0 NA Intergenic Intergenic 12214 ENSMUSG00000114533.1 ENSMUSG00000114533 ENSMUST00000224382 Gm8416 processed_pseudogene Interval_53577 chr14 59533738 59535199 + 0 NA intron (ENSMUSG00000021981.10, intron 9 of 10) protein_coding-intron (ENSMUSG00000021981.10, intron 9 of 10) 63471 ENSMUSG00000021982.14 ENSMUSG00000021982 ENSMUST00000223842 Cdadc1 protein_coding Interval_128943 chr5 116223918 116225004 + 0 NA intron (ENSMUSG00000043913.14, intron 2 of 5) protein_coding-intron (ENSMUSG00000043913.14, intron 2 of 13) -19245 ENSMUSG00000086122.1 ENSMUSG00000086122 ENSMUST00000156169 Gm14507 antisense Interval_115189 chr4 93972575 93972835 + 0 NA Intergenic Intergenic -88668 ENSMUSG00000081685.1 ENSMUSG00000081685 ENSMUST00000118977 Gm12647 processed_pseudogene Interval_60967 chr15 78347838 78348473 + 0 NA promoter-TSS (ENSMUSG00000099059.1) miRNA-promoter-TSS (ENSMUSG00000099059.1) -444 ENSMUSG00000099059.1 ENSMUSG00000099059 ENSMUST00000183523 Mir7676-2 miRNA Interval_19279 chr10 96033258 96034027 + 0 NA intron (ENSMUSG00000036499.9, intron 22 of 28) protein_coding-intron (ENSMUSG00000036499.9, intron 22 of 28) 62363 ENSMUSG00000117008.1 ENSMUSG00000117008 ENSMUST00000233655 Gm49817 unitary_pseudogene Interval_90878 chr2 33169359 33169616 + 0 NA intron (ENSMUSG00000038831.16, intron 10 of 17) protein_coding-intron (ENSMUSG00000038831.16, intron 9 of 16) -8415 ENSMUSG00000085087.1 ENSMUSG00000085087 ENSMUST00000139288 Gm13528 antisense Interval_1743 chr1 33474485 33474842 + 0 NA intron (ENSMUSG00000026134.11, intron 12 of 13) protein_coding-intron (ENSMUSG00000026134.11, intron 12 of 13) -7438 ENSMUSG00000101682.1 ENSMUSG00000101682 ENSMUST00000185489 Gm29228 processed_pseudogene Interval_32987 chr11 113529516 113529990 + 0 NA intron (ENSMUSG00000041654.15, intron 3 of 4) protein_coding-intron (ENSMUSG00000041654.15, intron 3 of 10) 36026 ENSMUSG00000041654.15 ENSMUSG00000041654 ENSMUST00000123153 Slc39a11 protein_coding Interval_157109 chr8 65298134 65298351 + 0 NA Intergenic Intergenic -19055 ENSMUSG00000110226.1 ENSMUSG00000110226 ENSMUST00000209702 Gm7624 processed_pseudogene Interval_117163 chr4 120160880 120161719 + 0 NA promoter-TSS (ENSMUSG00000028635.7) protein_coding-promoter-TSS (ENSMUSG00000028635.7) 93 ENSMUSG00000028635.7 ENSMUSG00000028635 ENSMUST00000030384 Edn2 protein_coding Interval_105434 chr3 86274437 86274732 + 0 NA TTS (ENSMUSG00000077744.1) snoRNA-TTS (ENSMUSG00000077744.1) 778 ENSMUSG00000077744.1 ENSMUSG00000077744 ENSMUST00000104556 Gm26343 snoRNA Interval_14320 chr10 30814521 30814715 + 0 NA Intergenic Intergenic 27397 ENSMUSG00000019789.9 ENSMUSG00000019789 ENSMUST00000217504 Hey2 protein_coding Interval_99705 chr2 164407822 164408563 + 0 NA exon (ENSMUSG00000017007.9, exon 5 of 10) protein_coding-exon (ENSMUSG00000017007.9, exon 5 of 10) -3579 ENSMUSG00000016995.17 ENSMUSG00000016995 ENSMUST00000154940 Matn4 protein_coding Interval_161018 chr8 116945210 116945624 + 0 NA intron (ENSMUSG00000047388.10, intron 1 of 3) protein_coding-intron (ENSMUSG00000047388.10, intron 1 of 3) 2024 ENSMUSG00000047388.10 ENSMUSG00000047388 ENSMUST00000109099 Atmin protein_coding Interval_48233 chr13 97333821 97334578 + 0 NA Intergenic Intergenic -42035 ENSMUSG00000114425.1 ENSMUSG00000114425 ENSMUST00000223964 Gm33447 lincRNA Interval_7060 chr1 124845752 124846023 + 0 NA exon (ENSMUSG00000036815.17, exon 1 of 3) protein_coding-exon (ENSMUSG00000036815.17, exon 1 of 3) 152 ENSMUSG00000036815.17 ENSMUSG00000036815 ENSMUST00000187286 Dpp10 protein_coding Interval_68419 chr16 76319663 76320063 + 0 NA intron (ENSMUSG00000048490.14, intron 2 of 2) protein_coding-intron (ENSMUSG00000048490.14, intron 3 of 3) 53963 ENSMUSG00000048490.14 ENSMUSG00000048490 ENSMUST00000145649 Nrip1 protein_coding Interval_8098 chr1 135719607 135720280 + 0 NA promoter-TSS (ENSMUSG00000026421.14) protein_coding-promoter-TSS (ENSMUSG00000026421.14) -118 ENSMUSG00000026421.14 ENSMUSG00000026421 ENSMUST00000027677 Csrp1 protein_coding Interval_36420 chr12 44275292 44275766 + 0 NA intron (ENSMUSG00000036257.15, intron 1 of 1) protein_coding-intron (ENSMUSG00000036257.15, intron 1 of 9) 6362 ENSMUSG00000036257.15 ENSMUSG00000036257 ENSMUST00000156082 Pnpla8 protein_coding Interval_73583 chr17 40794004 40794377 + 0 NA promoter-TSS (ENSMUSG00000023930.14) protein_coding-promoter-TSS (ENSMUSG00000023930.14) -88 ENSMUSG00000023930.14 ENSMUSG00000023930 ENSMUST00000124399 Crisp2 protein_coding Interval_78745 chr18 20148657 20149897 + 0 NA Intergenic Intergenic -34406 ENSMUSG00000044322.7 ENSMUSG00000044322 ENSMUST00000226115 Dsc1 protein_coding Interval_3633 chr1 60133260 60133551 + 0 NA intron (ENSMUSG00000026017.13, intron 6 of 11) protein_coding-intron (ENSMUSG00000026017.13, intron 6 of 13) 16150 ENSMUSG00000082609.1 ENSMUSG00000082609 ENSMUST00000118718 Gm15464 processed_pseudogene Interval_3084 chr1 53049976 53050174 + 0 NA Intergenic Intergenic -11582 ENSMUSG00000026100.6 ENSMUSG00000026100 ENSMUST00000191197 Mstn protein_coding Interval_120831 chr4 150898655 150899227 + 0 NA intron (ENSMUSG00000028964.14, intron 2 of 2) protein_coding-intron (ENSMUSG00000028964.14, intron 6 of 6) 10887 ENSMUSG00000028964.14 ENSMUSG00000028964 ENSMUST00000146184 Park7 protein_coding Interval_16515 chr10 63308672 63309273 + 0 NA TTS (ENSMUSG00000020064.9) protein_coding-TTS (ENSMUSG00000020064.9) -13179 ENSMUSG00000096991.1 ENSMUSG00000096991 ENSMUST00000181342 Gm26789 antisense Interval_37792 chr12 72007794 72008142 + 0 NA Intergenic Intergenic 41291 ENSMUSG00000114155.1 ENSMUSG00000114155 ENSMUST00000221336 Gm7986 processed_pseudogene Interval_55436 chr14 87248059 87248312 + 0 NA Intergenic Intergenic -48111 ENSMUSG00000102284.1 ENSMUSG00000102284 ENSMUST00000194560 Gm37002 TEC Interval_13002 chr10 9092827 9093465 + 0 NA Intergenic Intergenic -21671 ENSMUSG00000111077.1 ENSMUSG00000111077 ENSMUST00000216441 Gm48743 TEC Interval_139556 chr6 101007316 101008166 + 0 NA Intergenic Intergenic -20281 ENSMUSG00000107887.1 ENSMUSG00000107887 ENSMUST00000204767 Gm43950 lincRNA Interval_163634 chr9 22837147 22838620 + 0 NA intron (ENSMUSG00000035919.16, intron 21 of 22) protein_coding-intron (ENSMUSG00000035919.16, intron 20 of 21) -65048 ENSMUSG00000098940.1 ENSMUSG00000098940 ENSMUST00000184937 Gm27639 snRNA Interval_91085 chr2 34935964 34938142 + 0 NA Intergenic Intergenic 20803 ENSMUSG00000088754.1 ENSMUSG00000088754 ENSMUST00000158129 Gm24905 snRNA Interval_135067 chr6 35145541 35146467 + 0 NA Intergenic Intergenic -12317 ENSMUSG00000038784.13 ENSMUSG00000038784 ENSMUST00000202666 Cnot4 protein_coding Interval_81806 chr18 64911349 64913699 + 0 NA intron (ENSMUSG00000024589.18, intron 1 of 30) protein_coding-intron (ENSMUSG00000024589.18, intron 1 of 29) -24033 ENSMUSG00000114210.2 ENSMUSG00000114210 ENSMUST00000224731 A330084C13Rik antisense Interval_37204 chr12 59637901 59638338 + 0 NA Intergenic Intergenic 8047 ENSMUSG00000112851.1 ENSMUSG00000112851 ENSMUST00000219830 Gm7727 processed_pseudogene Interval_77231 chr17 87492103 87493317 + 0 NA intron (ENSMUSG00000100847.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000100847.1, intron 1 of 1) 1962 ENSMUSG00000100847.1 ENSMUSG00000100847 ENSMUST00000188990 Gm28676 lincRNA Interval_117623 chr4 125114524 125115789 + 0 NA Intergenic Intergenic 7364 ENSMUSG00000042677.7 ENSMUSG00000042677 ENSMUST00000131685 Zc3h12a protein_coding Interval_174271 chrX 142806187 142807051 + 0 NA intron (ENSMUSG00000047045.17, intron 2 of 4) protein_coding-intron (ENSMUSG00000047045.17, intron 5 of 6) -30272 ENSMUSG00000081463.1 ENSMUSG00000081463 ENSMUST00000120474 Gm15049 processed_pseudogene Interval_171326 chr9 116375712 116376011 + 0 NA Intergenic Intergenic 44693 ENSMUSG00000110752.1 ENSMUSG00000110752 ENSMUST00000217456 D730003K21Rik lincRNA Interval_135032 chr6 34854443 34854822 + 0 NA intron (ENSMUSG00000038836.15, intron 18 of 18) protein_coding-intron (ENSMUSG00000038836.15, intron 19 of 19) -5073 ENSMUSG00000106707.1 ENSMUSG00000106707 ENSMUST00000202329 Gm43748 TEC Interval_47864 chr13 93985129 93985735 + 0 NA exon (ENSMUSG00000113791.1, exon 2 of 3) lincRNA-exon (ENSMUSG00000113791.1, exon 2 of 3) 6336 ENSMUSG00000113791.1 ENSMUSG00000113791 ENSMUST00000221440 Gm47216 lincRNA Interval_172052 chr9 124079069 124080169 + 0 NA Intergenic Intergenic -22331 ENSMUSG00000049103.14 ENSMUSG00000049103 ENSMUST00000165984 Ccr2 protein_coding Interval_162903 chr9 12476569 12477035 + 0 NA Intergenic Intergenic 242808 ENSMUSG00000111810.1 ENSMUSG00000111810 ENSMUST00000217033 Gm29785 processed_pseudogene Interval_96059 chr2 119508724 119509003 + 0 NA exon (ENSMUSG00000082369.1, exon 1 of 1) processed_pseudogene-exon (ENSMUSG00000082369.1, exon 1 of 1) 366 ENSMUSG00000082369.1 ENSMUSG00000082369 ENSMUST00000119645 Gm14208 processed_pseudogene Interval_9227 chr1 155236438 155237874 + 0 NA intron (ENSMUSG00000033722.9, intron 1 of 2) protein_coding-intron (ENSMUSG00000033722.9, intron 1 of 2) 5852 ENSMUSG00000103670.1 ENSMUSG00000103670 ENSMUST00000192162 Gm37622 antisense Interval_63714 chr15 102998429 103001005 + 0 NA promoter-TSS (ENSMUSG00000001661.5) protein_coding-promoter-TSS (ENSMUSG00000001661.5) -812 ENSMUSG00000001661.5 ENSMUSG00000001661 ENSMUST00000001711 Hoxc6 protein_coding Interval_136831 chr6 61115238 61116040 + 0 NA Intergenic Intergenic 32268 ENSMUSG00000107652.1 ENSMUSG00000107652 ENSMUST00000203274 Gm43894 lincRNA Interval_56085 chr14 105496240 105496449 + 0 NA Intergenic Intergenic -4592 ENSMUSG00000022116.7 ENSMUSG00000022116 ENSMUST00000188698 4930449E01Rik processed_transcript Interval_58276 chr15 31569495 31569931 + 0 NA intron (ENSMUSG00000022235.15, intron 1 of 4) protein_coding-intron (ENSMUSG00000022235.15, intron 1 of 5) 4324 ENSMUSG00000022235.15 ENSMUSG00000022235 ENSMUST00000161088 Cmbl protein_coding Interval_57473 chr15 11581757 11582130 + 0 NA Intergenic Intergenic -48786 ENSMUSG00000115804.1 ENSMUSG00000115804 ENSMUST00000228129 Gm49107 lincRNA Interval_156147 chr8 45112182 45112375 + 0 NA intron (ENSMUSG00000110260.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000110260.1, intron 1 of 2) 27111 ENSMUSG00000054764.9 ENSMUSG00000054764 ENSMUST00000209488 Mtnr1a protein_coding Interval_46945 chr13 73630383 73630823 + 0 NA TTS (ENSMUSG00000021611.9) protein_coding-TTS (ENSMUSG00000021611.9) 13799 ENSMUSG00000021610.8 ENSMUSG00000021610 ENSMUST00000221130 Clptm1l protein_coding Interval_29859 chr11 87373352 87373744 + 0 NA Intergenic Intergenic -14911 ENSMUSG00000046442.4 ENSMUSG00000046442 ENSMUST00000155154 Ppm1e protein_coding Interval_11775 chr1 185343395 185343836 + 0 NA intron (ENSMUSG00000026617.16, intron 3 of 9) protein_coding-intron (ENSMUSG00000026617.16, intron 3 of 8) 11443 ENSMUSG00000026617.16 ENSMUSG00000026617 ENSMUST00000137757 Bpnt1 protein_coding Interval_78582 chr18 14890557 14890772 + 0 NA intron (ENSMUSG00000054321.7, intron 14 of 14) protein_coding-intron (ENSMUSG00000054321.7, intron 14 of 14) 33447 ENSMUSG00000117436.1 ENSMUSG00000117436 ENSMUST00000234412 Gm9474 processed_pseudogene Interval_164676 chr9 40491731 40492475 + 0 NA intron (ENSMUSG00000040111.17, intron 1 of 20) protein_coding-intron (ENSMUSG00000040111.17, intron 1 of 20) 4383 ENSMUSG00000111515.1 ENSMUSG00000111515 ENSMUST00000215697 Gm5055 processed_pseudogene Interval_81828 chr18 65056584 65057494 + 0 NA intron (ENSMUSG00000024589.18, intron 1 of 26) protein_coding-intron (ENSMUSG00000024589.18, intron 1 of 29) -26015 ENSMUSG00000024589.18 ENSMUSG00000024589 ENSMUST00000236100 Nedd4l protein_coding Interval_106209 chr3 94616725 94618215 + 0 NA intron (ENSMUSG00000005968.14, intron 8 of 11) protein_coding-intron (ENSMUSG00000005968.14, intron 9 of 12) -12686 ENSMUSG00000062896.3 ENSMUSG00000062896 ENSMUST00000119898 Rpl31-ps11 processed_pseudogene Interval_6538 chr1 115004782 115005423 + 0 NA Intergenic Intergenic 214661 ENSMUSG00000101687.1 ENSMUSG00000101687 ENSMUST00000185902 Gm4854 processed_pseudogene Interval_152794 chr7 137653730 137654082 + 0 NA Intergenic Intergenic 4817 ENSMUSG00000110145.1 ENSMUSG00000110145 ENSMUST00000210825 Gm45683 TEC Interval_138960 chr6 93841927 93842757 + 0 NA intron (ENSMUSG00000045095.16, intron 2 of 24) protein_coding-intron (ENSMUSG00000045095.16, intron 2 of 21) -48273 ENSMUSG00000089069.1 ENSMUSG00000089069 ENSMUST00000158444 Gm22840 snoRNA Interval_171903 chr9 122263130 122263963 + 0 NA intron (ENSMUSG00000037949.8, intron 5 of 11) protein_coding-intron (ENSMUSG00000037949.8, intron 5 of 12) 10482 ENSMUSG00000098922.1 ENSMUSG00000098922 ENSMUST00000184520 Mir8106 miRNA Interval_70685 chr17 13014141 13014334 + 0 NA TTS (ENSMUSG00000006818.5) protein_coding-TTS (ENSMUSG00000006818.5) -20068 ENSMUSG00000060475.13 ENSMUSG00000060475 ENSMUST00000233467 Wtap protein_coding Interval_24328 chr11 32419913 32420652 + 0 NA intron (ENSMUSG00000040711.8, intron 13 of 13) protein_coding-intron (ENSMUSG00000040711.8, intron 12 of 12) -35088 ENSMUSG00000044949.4 ENSMUSG00000044949 ENSMUST00000051053 Ubtd2 protein_coding Interval_134510 chr6 29241835 29242900 + 0 NA Intergenic Intergenic 7933 ENSMUSG00000089289.1 ENSMUSG00000089289 ENSMUST00000158664 Gm26021 snoRNA Interval_158609 chr8 84737569 84738062 + 0 NA intron (ENSMUSG00000001911.16, intron 2 of 9) protein_coding-intron (ENSMUSG00000001911.16, intron 2 of 8) 14808 ENSMUSG00000074203.4 ENSMUSG00000074203 ENSMUST00000098571 G430095P16Rik protein_coding Interval_171034 chr9 113839745 113840007 + 0 NA intron (ENSMUSG00000033392.16, intron 9 of 10) protein_coding-intron (ENSMUSG00000033392.16, intron 3 of 32) -63578 ENSMUSG00000087992.1 ENSMUSG00000087992 ENSMUST00000157367 Gm25059 snoRNA Interval_129367 chr5 119579068 119580577 + 0 NA intron (ENSMUSG00000087516.7, intron 2 of 5) antisense-intron (ENSMUSG00000087516.7, intron 2 of 5) 18382 ENSMUSG00000106991.1 ENSMUSG00000106991 ENSMUST00000202546 Gm43399 TEC Interval_167325 chr9 67399695 67400159 + 0 NA intron (ENSMUSG00000052698.15, intron 3 of 58) protein_coding-intron (ENSMUSG00000052698.15, intron 2 of 57) -24576 ENSMUSG00000111412.1 ENSMUSG00000111412 ENSMUST00000216972 Gm47047 antisense Interval_104577 chr3 68475642 68478213 + 0 NA intron (ENSMUSG00000027777.15, intron 1 of 7) protein_coding-intron (ENSMUSG00000027777.15, intron 1 of 7) -16564 ENSMUSG00000027777.15 ENSMUSG00000027777 ENSMUST00000182360 Schip1 protein_coding Interval_104579 chr3 68487764 68488853 + 0 NA intron (ENSMUSG00000027777.15, intron 1 of 7) protein_coding-intron (ENSMUSG00000027777.15, intron 1 of 7) -5183 ENSMUSG00000027777.15 ENSMUSG00000027777 ENSMUST00000182360 Schip1 protein_coding Interval_87474 chr19 52750002 52750475 + 0 NA Intergenic Intergenic -173004 ENSMUSG00000117896.1 ENSMUSG00000117896 ENSMUST00000237126 AA387883 lincRNA Interval_117287 chr4 122673821 122674176 + 0 NA intron (ENSMUSG00000083109.3, intron 1 of 3) unprocessed_pseudogene-intron (ENSMUSG00000083109.3, intron 1 of 3) 3280 ENSMUSG00000083109.3 ENSMUSG00000083109 ENSMUST00000120975 Gm12876 unprocessed_pseudogene Interval_122804 chr5 25639304 25639493 + 0 NA Intergenic Intergenic -20411 ENSMUSG00000106144.1 ENSMUSG00000106144 ENSMUST00000181398 Gm43972 lincRNA Interval_109136 chr3 136558595 136558865 + 0 NA Intergenic Intergenic -109381 ENSMUSG00000099508.1 ENSMUSG00000099508 ENSMUST00000189233 1700030L20Rik lincRNA Interval_78459 chr18 12993617 12994137 + 0 NA TTS (ENSMUSG00000024423.6) protein_coding-TTS (ENSMUSG00000024423.6) -13160 ENSMUSG00000037346.5 ENSMUSG00000037346 ENSMUST00000234565 Hrh4 protein_coding Interval_91463 chr2 39053050 39053812 + 0 NA promoter-TSS (ENSMUSG00000026754.16) protein_coding-promoter-TSS (ENSMUSG00000026754.16) 25654 ENSMUSG00000065127.1 ENSMUSG00000065127 ENSMUST00000083193 Gm26127 snRNA Interval_124665 chr5 52977827 52978710 + 0 NA intron (ENSMUSG00000106352.4, intron 2 of 2) processed_transcript-intron (ENSMUSG00000106352.4, intron 2 of 2) -3769 ENSMUSG00000106538.1 ENSMUSG00000106538 ENSMUST00000199474 Gm30301 lincRNA Interval_62837 chr15 97342648 97343132 + 0 NA intron (ENSMUSG00000044250.8, intron 3 of 5) protein_coding-intron (ENSMUSG00000044250.8, intron 3 of 5) -18312 ENSMUSG00000044250.8 ENSMUSG00000044250 ENSMUST00000226495 Pced1b protein_coding Interval_109195 chr3 137832784 137834489 + 0 NA Intergenic Intergenic -30167 ENSMUSG00000105427.1 ENSMUSG00000105427 ENSMUST00000198262 Gm31678 lincRNA Interval_174408 chrX 151742533 151742898 + 0 NA Intergenic Intergenic 15478 ENSMUSG00000081331.1 ENSMUSG00000081331 ENSMUST00000117106 Gm15151 processed_pseudogene Interval_40939 chr12 110046156 110046649 + 0 NA TTS (ENSMUSG00000113868.1) lincRNA-TTS (ENSMUSG00000113868.1) -15868 ENSMUSG00000113217.1 ENSMUSG00000113217 ENSMUST00000220598 Gm47187 processed_pseudogene Interval_140038 chr6 113574617 113574994 + 0 NA TTS (ENSMUSG00000034023.16) protein_coding-TTS (ENSMUSG00000034023.16) -9940 ENSMUSG00000107786.1 ENSMUSG00000107786 ENSMUST00000204537 Gm44232 processed_pseudogene Interval_88969 chr2 13751721 13752495 + 0 NA intron (ENSMUSG00000003418.11, intron 2 of 7) protein_coding-intron (ENSMUSG00000003418.11, intron 2 of 7) 41185 ENSMUSG00000003418.11 ENSMUSG00000003418 ENSMUST00000150781 St8sia6 protein_coding Interval_97750 chr2 143776239 143777395 + 0 NA intron (ENSMUSG00000027419.9, intron 7 of 11) protein_coding-intron (ENSMUSG00000027419.9, intron 7 of 11) 19148 ENSMUSG00000087115.7 ENSMUSG00000087115 ENSMUST00000156362 Pcsk2os2 antisense Interval_35262 chr12 19185805 19187164 + 0 NA Intergenic Intergenic 10381 ENSMUSG00000113205.1 ENSMUSG00000113205 ENSMUST00000222931 Gm48525 processed_pseudogene Interval_30967 chr11 97476268 97477103 + 0 NA intron (ENSMUSG00000049807.16, intron 14 of 18) protein_coding-intron (ENSMUSG00000049807.16, intron 15 of 18) 23655 ENSMUSG00000047988.1 ENSMUSG00000047988 ENSMUST00000056955 4933428G20Rik protein_coding Interval_4755 chr1 78395435 78396374 + 0 NA intron (ENSMUSG00000032908.9, intron 4 of 4) protein_coding-intron (ENSMUSG00000032908.9, intron 4 of 4) 20290 ENSMUSG00000102945.1 ENSMUSG00000102945 ENSMUST00000191857 Gm37884 TEC Interval_24801 chr11 38583037 38583349 + 0 NA Intergenic Intergenic -63180 ENSMUSG00000087296.1 ENSMUSG00000087296 ENSMUST00000133599 Gm12130 lincRNA Interval_85498 chr19 27546773 27547557 + 0 NA Intergenic Intergenic 34657 ENSMUSG00000118072.1 ENSMUSG00000118072 ENSMUST00000235994 Gm50101 processed_pseudogene Interval_163874 chr9 27356815 27357701 + 0 NA exon (ENSMUSG00000034275.18, exon 20 of 20) protein_coding-exon (ENSMUSG00000034275.18, exon 20 of 20) -29009 ENSMUSG00000110920.1 ENSMUSG00000110920 ENSMUST00000215351 Gm48858 processed_pseudogene Interval_13836 chr10 23631478 23632014 + 0 NA Intergenic Intergenic -9598 ENSMUSG00000112868.1 ENSMUSG00000112868 ENSMUST00000219522 4930520K02Rik lincRNA Interval_169689 chr9 100395645 100395950 + 0 NA Intergenic Intergenic -3946 ENSMUSG00000111258.1 ENSMUSG00000111258 ENSMUST00000213192 Gm34397 lincRNA Interval_162447 chr8 128843840 128844452 + 0 NA intron (ENSMUSG00000025808.17, intron 36 of 55) protein_coding-intron (ENSMUSG00000025808.17, intron 36 of 55) -44980 ENSMUSG00000025808.17 ENSMUSG00000025808 ENSMUST00000108747 Ccdc7a protein_coding Interval_131510 chr5 137644380 137645866 + 0 NA exon (ENSMUSG00000047182.6, exon 1 of 2) protein_coding-exon (ENSMUSG00000047182.6, exon 1 of 2) 414 ENSMUSG00000047182.6 ENSMUSG00000047182 ENSMUST00000057314 Irs3 protein_coding Interval_149046 chr7 92653472 92654450 + 0 NA intron (ENSMUSG00000041328.16, intron 5 of 12) protein_coding-intron (ENSMUSG00000041328.16, intron 8 of 15) 14012 ENSMUSG00000102555.1 ENSMUSG00000102555 ENSMUST00000192772 6430511E19Rik TEC Interval_41688 chr12 117763390 117763821 + 0 NA Intergenic Intergenic 39633 ENSMUSG00000113840.1 ENSMUSG00000113840 ENSMUST00000223173 Gm18955 processed_pseudogene Interval_64625 chr16 13738009 13739760 + 0 NA intron (ENSMUSG00000115907.1, intron 1 of 1) antisense-intron (ENSMUSG00000086550.2, intron 2 of 2) 320 ENSMUSG00000115907.1 ENSMUSG00000115907 ENSMUST00000229709 Gm49432 lincRNA Interval_105912 chr3 90045163 90045359 + 0 NA intron (ENSMUSG00000042520.16, intron 2 of 3) protein_coding-intron (ENSMUSG00000042520.16, intron 2 of 28) -7593 ENSMUSG00000027942.17 ENSMUSG00000027942 ENSMUST00000162390 4933434E20Rik protein_coding Interval_82982 chr18 80150735 80152284 + 0 NA promoter-TSS (ENSMUSG00000053950.10) protein_coding-promoter-TSS (ENSMUSG00000053950.10) -27 ENSMUSG00000053950.10 ENSMUSG00000053950 ENSMUST00000066743 Adnp2 protein_coding Interval_135168 chr6 37149923 37150418 + 0 NA intron (ENSMUSG00000038665.15, intron 1 of 32) protein_coding-intron (ENSMUSG00000038665.15, intron 2 of 32) 150014 ENSMUSG00000038665.15 ENSMUSG00000038665 ENSMUST00000136457 Dgki protein_coding Interval_43671 chr13 34856833 34857720 + 0 NA Intergenic Intergenic 9301 ENSMUSG00000114127.1 ENSMUSG00000114127 ENSMUST00000221617 Gm8231 processed_pseudogene Interval_88230 chr19 60850261 60850698 + 0 NA intron (ENSMUSG00000063698.9, intron 11 of 13) protein_coding-intron (ENSMUSG00000063698.9, intron 12 of 14) 11000 ENSMUSG00000063698.9 ENSMUSG00000063698 ENSMUST00000124921 Sfxn4 protein_coding Interval_754 chr1 10681985 10682732 + 0 NA intron (ENSMUSG00000042501.12, intron 1 of 9) protein_coding-intron (ENSMUSG00000042501.12, intron 1 of 10) -12765 ENSMUSG00000081417.1 ENSMUSG00000081417 ENSMUST00000119252 Gm15603 processed_pseudogene Interval_31781 chr11 102808630 102809272 + 0 NA intron (ENSMUSG00000034520.14, intron 1 of 2) protein_coding-intron (ENSMUSG00000034520.14, intron 1 of 2) -3163 ENSMUSG00000034520.14 ENSMUSG00000034520 ENSMUST00000131164 Gjc1 protein_coding Interval_166722 chr9 62263593 62264165 + 0 NA Intergenic Intergenic 18329 ENSMUSG00000046846.4 ENSMUSG00000046846 ENSMUST00000056949 Spesp1 protein_coding Interval_1053 chr1 14506182 14507480 + 0 NA Intergenic Intergenic -202261 ENSMUSG00000025932.14 ENSMUSG00000025932 ENSMUST00000185329 Eya1 protein_coding Interval_170803 chr9 110870995 110871480 + 0 NA intron (ENSMUSG00000049555.10, intron 3 of 5) protein_coding-intron (ENSMUSG00000049555.10, intron 3 of 5) 4784 ENSMUSG00000049555.10 ENSMUSG00000049555 ENSMUST00000199189 Tmie protein_coding Interval_147761 chr7 73418740 73420081 + 0 NA exon (ENSMUSG00000070509.15, exon 4 of 4) protein_coding-exon (ENSMUSG00000070509.15, exon 4 of 4) -2840 ENSMUSG00000108601.1 ENSMUSG00000108601 ENSMUST00000205492 Gm44645 TEC Interval_47838 chr13 93662331 93662800 + 0 NA intron (ENSMUSG00000042118.7, intron 6 of 7) protein_coding-intron (ENSMUSG00000042118.7, intron 6 of 7) 11737 ENSMUSG00000042118.7 ENSMUSG00000042118 ENSMUST00000015941 Bhmt2 protein_coding Interval_61454 chr15 81729334 81730567 + 0 NA promoter-TSS (ENSMUSG00000022391.16) protein_coding-promoter-TSS (ENSMUSG00000022391.16) 15580 ENSMUSG00000022391.16 ENSMUSG00000022391 ENSMUST00000230726 Rangap1 protein_coding Interval_113547 chr4 56318981 56319295 + 0 NA Intergenic Intergenic -68664 ENSMUSG00000082613.1 ENSMUSG00000082613 ENSMUST00000122075 Gm12518 processed_pseudogene Interval_6310 chr1 105786945 105787253 + 0 NA intron (ENSMUSG00000026321.7, intron 1 of 3) protein_coding-intron (ENSMUSG00000026321.7, intron 1 of 9) 6349 ENSMUSG00000026321.7 ENSMUSG00000026321 ENSMUST00000187658 Tnfrsf11a protein_coding Interval_65242 chr16 20804076 20805958 + 0 NA Intergenic Intergenic -1632 ENSMUSG00000116922.1 ENSMUSG00000116922 ENSMUST00000231314 4833419O12Rik lincRNA Interval_59568 chr15 55418743 55419091 + 0 NA intron (ENSMUSG00000022371.16, intron 20 of 47) protein_coding-intron (ENSMUSG00000022371.16, intron 20 of 47) 20103 ENSMUSG00000101568.1 ENSMUSG00000101568 ENSMUST00000187158 1700040F17Rik antisense Interval_67364 chr16 48056764 48057119 + 0 NA Intergenic Intergenic -16056 ENSMUSG00000067716.3 ENSMUSG00000067716 ENSMUST00000088296 Gm7275 processed_pseudogene Interval_35885 chr12 31594001 31594542 + 0 NA exon (ENSMUSG00000020650.15, exon 8 of 8) protein_coding-exon (ENSMUSG00000020650.15, exon 8 of 8) 7478 ENSMUSG00000020650.15 ENSMUSG00000020650 ENSMUST00000218543 Bcap29 protein_coding Interval_45277 chr13 53835297 53836041 + 0 NA Intergenic Intergenic -52958 ENSMUSG00000114012.1 ENSMUSG00000114012 ENSMUST00000221478 Gm18974 processed_pseudogene Interval_33436 chr11 116528889 116529108 + 0 NA TTS (ENSMUSG00000100779.1) antisense-TTS (ENSMUSG00000100779.1) 4079 ENSMUSG00000100779.1 ENSMUSG00000100779 ENSMUST00000186169 Gm29292 antisense Interval_22910 chr11 17283952 17284471 + 0 NA Intergenic Intergenic 14208 ENSMUSG00000082797.3 ENSMUSG00000082797 ENSMUST00000117065 Gm12015 processed_pseudogene Interval_37889 chr12 72809331 72810483 + 0 NA Intergenic Intergenic -7805 ENSMUSG00000113779.1 ENSMUSG00000113779 ENSMUST00000222961 Gm33785 lincRNA Interval_27348 chr11 66881030 66882052 + 0 NA Intergenic Intergenic -30440 ENSMUSG00000048070.4 ENSMUSG00000048070 ENSMUST00000123434 Pirt protein_coding Interval_90769 chr2 32501617 32502375 + 0 NA Intergenic Intergenic 14008 ENSMUSG00000103175.1 ENSMUSG00000103175 ENSMUST00000195599 Gm37169 TEC Interval_72290 chr17 28996121 28996770 + 0 NA intron (ENSMUSG00000024006.17, intron 2 of 10) protein_coding-intron (ENSMUSG00000024006.17, intron 2 of 13) -5062 ENSMUSG00000024006.17 ENSMUSG00000024006 ENSMUST00000233723 Stk38 protein_coding Interval_17277 chr10 75536133 75536555 + 0 NA TTS (ENSMUSG00000020180.10) protein_coding-TTS (ENSMUSG00000020180.10) 17550 ENSMUSG00000046807.10 ENSMUSG00000046807 ENSMUST00000051129 Lrrc75b protein_coding Interval_129055 chr5 117110972 117111191 + 0 NA intron (ENSMUSG00000066900.11, intron 1 of 4) protein_coding-intron (ENSMUSG00000066900.11, intron 2 of 11) -4137 ENSMUSG00000086047.1 ENSMUSG00000086047 ENSMUST00000149413 9530046B11Rik antisense Interval_37770 chr12 71875890 71876651 + 0 NA intron (ENSMUSG00000034574.10, intron 1 of 14) protein_coding-intron (ENSMUSG00000034574.10, intron 1 of 25) -28979 ENSMUSG00000098224.1 ENSMUSG00000098224 ENSMUST00000183329 Gm7985 processed_pseudogene Interval_24469 chr11 33496104 33498406 + 0 NA intron (ENSMUSG00000040594.19, intron 3 of 6) protein_coding-intron (ENSMUSG00000040594.19, intron 3 of 11) -44741 ENSMUSG00000040594.19 ENSMUSG00000040594 ENSMUST00000147751 Ranbp17 protein_coding Interval_97426 chr2 136089355 136089567 + 0 NA intron (ENSMUSG00000039913.12, intron 7 of 9) protein_coding-intron (ENSMUSG00000039913.12, intron 8 of 10) 31209 ENSMUSG00000027270.14 ENSMUSG00000027270 ENSMUST00000123436 Lamp5 protein_coding Interval_111716 chr4 26518035 26518369 + 0 NA Intergenic Intergenic -16543 ENSMUSG00000081985.1 ENSMUSG00000081985 ENSMUST00000120523 Gng2-ps1 processed_pseudogene Interval_134661 chr6 30195544 30196989 + 0 NA Intergenic Intergenic 23373 ENSMUSG00000103108.2 ENSMUSG00000103108 ENSMUST00000194541 Rncr4 lincRNA Interval_140235 chr6 115717375 115718536 + 0 NA Intergenic Intergenic 5877 ENSMUSG00000088358.1 ENSMUSG00000088358 ENSMUST00000157733 Gm24008 snoRNA Interval_118464 chr4 131825856 131827191 + 0 NA intron (ENSMUSG00000028909.17, intron 1 of 25) protein_coding-intron (ENSMUSG00000028909.17, intron 1 of 30) -28153 ENSMUSG00000028909.17 ENSMUSG00000028909 ENSMUST00000139641 Ptpru protein_coding Interval_143566 chr7 12871620 12871879 + 0 NA Intergenic Intergenic -3166 ENSMUSG00000110320.1 ENSMUSG00000110320 ENSMUST00000210319 Gm31152 lincRNA Interval_7312 chr1 128798899 128799429 + 0 NA Intergenic Intergenic -24743 ENSMUSG00000097283.1 ENSMUSG00000097283 ENSMUST00000181951 Gm26686 lincRNA Interval_56418 chr14 118635305 118635588 + 0 NA intron (ENSMUSG00000032849.14, intron 3 of 29) protein_coding-intron (ENSMUSG00000032849.14, intron 4 of 30) -42974 ENSMUSG00000098433.1 ENSMUSG00000098433 ENSMUST00000184391 Mir6391 miRNA Interval_104376 chr3 64579500 64580126 + 0 NA Intergenic Intergenic 13083 ENSMUSG00000093699.1 ENSMUSG00000093699 ENSMUST00000177446 Vmn2r-ps9 unprocessed_pseudogene Interval_82121 chr18 67846696 67847040 + 0 NA intron (ENSMUSG00000024542.9, intron 2 of 25) protein_coding-intron (ENSMUSG00000024542.9, intron 21 of 45) -23459 ENSMUSG00000024542.9 ENSMUSG00000024542 ENSMUST00000225589 Cep192 protein_coding Interval_74770 chr17 56433472 56434772 + 0 NA exon (ENSMUSG00000013236.17, exon 2 of 2) protein_coding-exon (ENSMUSG00000013236.17, exon 2 of 2) 1863 ENSMUSG00000013236.17 ENSMUSG00000013236 ENSMUST00000224193 Ptprs protein_coding Interval_45038 chr13 51676701 51676935 + 0 NA intron (ENSMUSG00000035139.14, intron 11 of 16) protein_coding-intron (ENSMUSG00000035139.14, intron 11 of 16) 25021 ENSMUSG00000035139.14 ENSMUSG00000035139 ENSMUST00000153877 Secisbp2 protein_coding Interval_104614 chr3 68821702 68822265 + 0 NA Intergenic Intergenic -24096 ENSMUSG00000102853.1 ENSMUSG00000102853 ENSMUST00000195818 Gm7270 processed_pseudogene Interval_149084 chr7 92977582 92978382 + 0 NA Intergenic Intergenic -1894 ENSMUSG00000108994.1 ENSMUSG00000108994 ENSMUST00000207656 Gm31663 transcribed_unprocessed_pseudogene Interval_86059 chr19 36111114 36111516 + 0 NA TTS (ENSMUSG00000024803.9) protein_coding-TTS (ENSMUSG00000024803.9) 8595 ENSMUSG00000024803.9 ENSMUSG00000024803 ENSMUST00000235221 Ankrd1 protein_coding Interval_18898 chr10 92890606 92890884 + 0 NA intron (ENSMUSG00000020014.17, intron 51 of 67) protein_coding-intron (ENSMUSG00000020014.17, intron 50 of 66) 142217 ENSMUSG00000020014.17 ENSMUSG00000020014 ENSMUST00000171781 Cfap54 protein_coding Interval_174056 chrX 133681541 133682358 + 0 NA intron (ENSMUSG00000051323.16, intron 1 of 4) protein_coding-intron (ENSMUSG00000051323.16, intron 1 of 4) 3042 ENSMUSG00000051323.16 ENSMUSG00000051323 ENSMUST00000193485 Pcdh19 protein_coding Interval_14877 chr10 40712982 40714005 + 0 NA intron (ENSMUSG00000045555.3, intron 1 of 4) protein_coding-intron (ENSMUSG00000045555.3, intron 1 of 4) 30211 ENSMUSG00000045555.3 ENSMUSG00000045555 ENSMUST00000058747 Mettl24 protein_coding Interval_71092 chr17 17896215 17896831 + 0 NA intron (ENSMUSG00000079700.7, intron 1 of 1) protein_coding-intron (ENSMUSG00000079700.7, intron 1 of 1) 8699 ENSMUSG00000052270.7 ENSMUSG00000052270 ENSMUST00000064068 Fpr2 protein_coding Interval_113295 chr4 53219389 53219703 + 0 NA Intergenic Intergenic -1985 ENSMUSG00000087192.7 ENSMUSG00000087192 ENSMUST00000139222 4930412L05Rik processed_transcript Interval_70449 chr17 10298272 10298538 + 0 NA intron (ENSMUSG00000062078.15, intron 1 of 6) protein_coding-intron (ENSMUSG00000062078.15, intron 1 of 6) 20956 ENSMUSG00000062078.15 ENSMUSG00000062078 ENSMUST00000233684 Qk protein_coding Interval_144802 chr7 28344680 28345087 + 0 NA Intergenic Intergenic -6041 ENSMUSG00000037563.15 ENSMUSG00000037563 ENSMUST00000155805 Rps16 protein_coding Interval_16761 chr10 68009342 68010058 + 0 NA intron (ENSMUSG00000037846.18, intron 6 of 14) protein_coding-intron (ENSMUSG00000037846.18, intron 6 of 14) 16926 ENSMUSG00000086838.1 ENSMUSG00000086838 ENSMUST00000143555 Gm16212 antisense Interval_48362 chr13 98517670 98518613 + 0 NA promoter-TSS (ENSMUSG00000104430.1) TEC-promoter-TSS (ENSMUSG00000104430.1) -203 ENSMUSG00000104430.1 ENSMUSG00000104430 ENSMUST00000193184 Gm37425 TEC Interval_85344 chr19 25018061 25018416 + 0 NA intron (ENSMUSG00000052085.7, intron 1 of 3) protein_coding-intron (ENSMUSG00000052085.7, intron 1 of 47) -34375 ENSMUSG00000052085.7 ENSMUSG00000052085 ENSMUST00000236576 Dock8 protein_coding Interval_115583 chr4 101076395 101076598 + 0 NA intron (ENSMUSG00000035275.14, intron 2 of 4) protein_coding-intron (ENSMUSG00000035275.14, intron 1 of 11) 7017 ENSMUSG00000035275.14 ENSMUSG00000035275 ENSMUST00000148148 Raver2 protein_coding Interval_143351 chr7 6062817 6063081 + 0 NA intron (ENSMUSG00000034690.13, intron 1 of 8) protein_coding-intron (ENSMUSG00000034690.13, intron 2 of 9) 2442 ENSMUSG00000034690.13 ENSMUSG00000034690 ENSMUST00000207267 Nlrp4c protein_coding Interval_38615 chr12 80557695 80557894 + 0 NA intron (ENSMUSG00000021130.8, intron 2 of 15) protein_coding-intron (ENSMUSG00000021130.8, intron 1 of 14) -38878 ENSMUSG00000097801.1 ENSMUSG00000097801 ENSMUST00000181852 Gm26777 bidirectional_promoter_lncRNA Interval_137407 chr6 71960810 71961124 + 0 NA promoter-TSS (ENSMUSG00000049553.11) protein_coding-promoter-TSS (ENSMUSG00000049553.11) 2808 ENSMUSG00000097133.1 ENSMUSG00000097133 ENSMUST00000181028 Gm26628 antisense Interval_26438 chr11 57850212 57850955 + 0 NA Intergenic Intergenic -17765 ENSMUSG00000037335.13 ENSMUSG00000037335 ENSMUST00000108845 Hand1 protein_coding Interval_151810 chr7 126797934 126800140 + 0 NA promoter-TSS (ENSMUSG00000030695.16) protein_coding-promoter-TSS (ENSMUSG00000030695.16) -44 ENSMUSG00000030695.16 ENSMUSG00000030695 ENSMUST00000133514 Aldoa protein_coding Interval_164061 chr9 31239089 31239766 + 0 NA Intergenic Intergenic -35394 ENSMUSG00000091003.2 ENSMUSG00000091003 ENSMUST00000164658 Gm7244 processed_pseudogene Interval_109044 chr3 135437732 135439599 + 0 NA promoter-TSS (ENSMUSG00000097032.2) antisense-promoter-TSS (ENSMUSG00000097032.2) 0 ENSMUSG00000097032.2 ENSMUSG00000097032 ENSMUST00000181619 4930539J05Rik antisense Interval_109481 chr3 142839815 142840283 + 0 NA intron (ENSMUSG00000004591.16, intron 2 of 21) protein_coding-intron (ENSMUSG00000004591.16, intron 2 of 21) -36929 ENSMUSG00000004591.16 ENSMUSG00000004591 ENSMUST00000197529 Pkn2 protein_coding Interval_61324 chr15 80849589 80851030 + 0 NA intron (ENSMUSG00000047888.10, intron 1 of 17) protein_coding-intron (ENSMUSG00000047888.10, intron 4 of 24) -72755 ENSMUSG00000047888.10 ENSMUSG00000047888 ENSMUST00000228525 Tnrc6b protein_coding Interval_70746 chr17 14136294 14137134 + 0 NA Intergenic Intergenic -10417 ENSMUSG00000117280.1 ENSMUSG00000117280 ENSMUST00000233203 Gm49903 unprocessed_pseudogene Interval_129950 chr5 123268397 123269593 + 0 NA intron (ENSMUSG00000029442.18, intron 5 of 21) protein_coding-intron (ENSMUSG00000029442.18, intron 5 of 21) -9133 ENSMUSG00000029442.18 ENSMUSG00000029442 ENSMUST00000125979 Wdr66 protein_coding Interval_131113 chr5 135217493 135217679 + 0 NA exon (ENSMUSG00000002748.7, exon 7 of 19) protein_coding-exon (ENSMUSG00000002748.7, exon 7 of 19) 9598 ENSMUSG00000080473.1 ENSMUSG00000080473 ENSMUST00000116823 Gm25315 miRNA Interval_66962 chr16 38830951 38832997 + 0 NA intron (ENSMUSG00000086175.2, intron 2 of 5) antisense-intron (ENSMUSG00000086175.2, intron 2 of 5) 3068 ENSMUSG00000086175.2 ENSMUSG00000086175 ENSMUST00000148657 Gm15802 antisense Interval_2855 chr1 46672681 46672888 + 0 NA intron (ENSMUSG00000101337.6, intron 43 of 64) protein_coding-intron (ENSMUSG00000101337.6, intron 43 of 64) 32553 ENSMUSG00000101337.6 ENSMUSG00000101337 ENSMUST00000187094 Dnah7c protein_coding Interval_39390 chr12 87086438 87087627 + 0 NA intron (ENSMUSG00000034145.14, intron 25 of 25) protein_coding-intron (ENSMUSG00000034145.14, intron 24 of 24) -5356 ENSMUSG00000112966.1 ENSMUSG00000112966 ENSMUST00000220808 Gm18499 processed_pseudogene Interval_65400 chr16 22139584 22141053 + 0 NA intron (ENSMUSG00000033581.17, intron 2 of 14) protein_coding-intron (ENSMUSG00000033581.17, intron 2 of 15) -19082 ENSMUSG00000033581.17 ENSMUSG00000033581 ENSMUST00000127696 Igf2bp2 protein_coding Interval_105838 chr3 89641824 89642463 + 0 NA intron (ENSMUSG00000000794.9, intron 3 of 7) protein_coding-intron (ENSMUSG00000000794.9, intron 3 of 7) -20375 ENSMUSG00000000794.9 ENSMUSG00000000794 ENSMUST00000124584 Kcnn3 protein_coding Interval_107847 chr3 116217194 116217936 + 0 NA Intergenic Intergenic 17157 ENSMUSG00000104607.1 ENSMUSG00000104607 ENSMUST00000198864 Gm31651 lincRNA Interval_8233 chr1 136638012 136638492 + 0 NA Intergenic Intergenic 13351 ENSMUSG00000041483.14 ENSMUSG00000041483 ENSMUST00000112046 Zfp281 protein_coding Interval_60031 chr15 64098872 64099144 + 0 NA intron (ENSMUSG00000093695.2, intron 2 of 4) protein_coding-intron (ENSMUSG00000022377.16, intron 28 of 30) 691 ENSMUSG00000093695.2 ENSMUSG00000093695 ENSMUST00000228817 Gm20717 antisense Interval_32086 chr11 105187550 105188091 + 0 NA intron (ENSMUSG00000020694.17, intron 2 of 5) protein_coding-intron (ENSMUSG00000020694.17, intron 2 of 20) -6387 ENSMUSG00000099681.1 ENSMUSG00000099681 ENSMUST00000190120 1700052K11Rik antisense Interval_75040 chr17 62004083 62004447 + 0 NA Intergenic Intergenic 131890 ENSMUSG00000117160.1 ENSMUSG00000117160 ENSMUST00000232834 Gm49859 processed_pseudogene Interval_8321 chr1 137323237 137324436 + 0 NA Intergenic Intergenic 2006 ENSMUSG00000102738.1 ENSMUSG00000102738 ENSMUST00000191810 1700006P03Rik TEC Interval_147938 chr7 75761802 75761994 + 0 NA Intergenic Intergenic -4530 ENSMUSG00000076961.1 ENSMUSG00000076961 ENSMUST00000103773 Gm23251 miRNA Interval_153395 chr7 144409602 144409839 + 0 NA exon (ENSMUSG00000037541.22, exon 9 of 10) protein_coding-exon (ENSMUSG00000037541.22, exon 9 of 10) -2787 ENSMUSG00000085745.1 ENSMUSG00000085745 ENSMUST00000125355 Gm14372 antisense Interval_134395 chr6 28214879 28216050 + 0 NA promoter-TSS (ENSMUSG00000043340.3) antisense-promoter-TSS (ENSMUSG00000043340.3) -112 ENSMUSG00000043340.3 ENSMUSG00000043340 ENSMUST00000143551 6530409C15Rik antisense Interval_50582 chr14 16037503 16039135 + 0 NA Intergenic Intergenic -1122 ENSMUSG00000114390.1 ENSMUSG00000114390 ENSMUST00000223757 1700062C10Rik lincRNA Interval_156294 chr8 47066534 47066912 + 0 NA intron (ENSMUSG00000038173.15, intron 4 of 6) protein_coding-intron (ENSMUSG00000038173.15, intron 5 of 7) -15598 ENSMUSG00000038173.15 ENSMUSG00000038173 ENSMUST00000210466 Enpp6 protein_coding Interval_101570 chr3 6767819 6768902 + 0 NA Intergenic Intergenic -16288 ENSMUSG00000103538.3 ENSMUSG00000103538 ENSMUST00000192834 Olfr289-ps1 unprocessed_pseudogene Interval_17150 chr10 72667749 72668712 + 0 NA exon (ENSMUSG00000019923.14, exon 8 of 8) protein_coding-exon (ENSMUSG00000019923.14, exon 8 of 8) 11986 ENSMUSG00000019923.14 ENSMUSG00000019923 ENSMUST00000219352 Zwint protein_coding Interval_155952 chr8 41249704 41250055 + 0 NA intron (ENSMUSG00000031592.10, intron 1 of 38) protein_coding-intron (ENSMUSG00000031592.10, intron 1 of 37) 10101 ENSMUSG00000031592.10 ENSMUSG00000031592 ENSMUST00000211247 Pcm1 protein_coding Interval_34498 chr12 4668718 4669030 + 0 NA intron (ENSMUSG00000020640.10, intron 25 of 39) protein_coding-intron (ENSMUSG00000020640.10, intron 24 of 38) -12986 ENSMUSG00000111971.1 ENSMUSG00000111971 ENSMUST00000218352 Gm48678 antisense Interval_77049 chr17 86025192 86025441 + 0 NA intron (ENSMUSG00000024135.10, intron 16 of 20) protein_coding-intron (ENSMUSG00000024135.10, intron 16 of 20) 15048 ENSMUSG00000024135.10 ENSMUSG00000024135 ENSMUST00000234595 Srbd1 protein_coding Interval_168254 chr9 78212613 78212814 + 0 NA TTS (ENSMUSG00000111015.1) processed_pseudogene-TTS (ENSMUSG00000111015.1) 2132 ENSMUSG00000111015.1 ENSMUSG00000111015 ENSMUST00000216513 Gm3126 processed_pseudogene Interval_73178 chr17 35295476 35297125 + 0 NA Intergenic Intergenic 10017 ENSMUSG00000092438.1 ENSMUSG00000092438 ENSMUST00000172937 Gm18734 unprocessed_pseudogene Interval_71585 chr17 24689138 24690161 + 0 NA intron (ENSMUSG00000007021.5, intron 1 of 3) protein_coding-intron (ENSMUSG00000007021.5, intron 1 of 3) -1450 ENSMUSG00000007021.5 ENSMUSG00000007021 ENSMUST00000007236 Syngr3 protein_coding Interval_40934 chr12 110000539 110001269 + 0 NA intron (ENSMUSG00000113063.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000113063.1, intron 1 of 2) 22969 ENSMUSG00000113063.1 ENSMUSG00000113063 ENSMUST00000222974 Gm34667 lincRNA Interval_24682 chr11 35878133 35878580 + 0 NA intron (ENSMUSG00000018849.6, intron 9 of 22) protein_coding-intron (ENSMUSG00000018849.6, intron 9 of 22) -24802 ENSMUSG00000018849.6 ENSMUSG00000018849 ENSMUST00000127086 Wwc1 protein_coding Interval_22372 chr11 9238285 9239187 + 0 NA intron (ENSMUSG00000004668.14, intron 3 of 5) protein_coding-intron (ENSMUSG00000004668.14, intron 3 of 61) 45285 ENSMUSG00000004668.14 ENSMUSG00000004668 ENSMUST00000151522 Abca13 protein_coding Interval_142614 chr6 144278399 144279447 + 0 NA intron (ENSMUSG00000041540.16, intron 4 of 6) protein_coding-intron (ENSMUSG00000041540.16, intron 4 of 13) -69355 ENSMUSG00000041540.16 ENSMUSG00000041540 ENSMUST00000150087 Sox5 protein_coding Interval_61827 chr15 84450276 84451181 + 0 NA Intergenic Intergenic -3631 ENSMUSG00000062760.11 ENSMUSG00000062760 ENSMUST00000186527 Shisal1 protein_coding Interval_61002 chr15 78653246 78653715 + 0 NA Intergenic Intergenic -17305 ENSMUSG00000116260.1 ENSMUSG00000116260 ENSMUST00000230183 1700041B01Rik antisense Interval_49646 chr13 113774646 113775322 + 0 NA Intergenic Intergenic 10369 ENSMUSG00000114781.1 ENSMUSG00000114781 ENSMUST00000225989 Gm47463 processed_pseudogene Interval_162860 chr9 10535292 10535564 + 0 NA intron (ENSMUSG00000039488.15, intron 2 of 20) protein_coding-intron (ENSMUSG00000039488.15, intron 2 of 24) 59493 ENSMUSG00000111648.1 ENSMUSG00000111648 ENSMUST00000217614 Gm46103 processed_pseudogene Interval_165490 chr9 48645190 48646612 + 0 NA Intergenic Intergenic -48526 ENSMUSG00000032271.13 ENSMUSG00000032271 ENSMUST00000128076 Nnmt protein_coding Interval_116171 chr4 108360157 108360842 + 0 NA Intergenic Intergenic 22850 ENSMUSG00000059816.5 ENSMUSG00000059816 ENSMUST00000053157 Shisal2a protein_coding Interval_85200 chr19 23698041 23700133 + 0 NA intron (ENSMUSG00000074925.4, intron 2 of 6) protein_coding-intron (ENSMUSG00000074925.4, intron 2 of 5) 11658 ENSMUSG00000074925.4 ENSMUSG00000074925 ENSMUST00000067077 Ptar1 protein_coding Interval_138449 chr6 88289326 88289521 + 0 NA intron (ENSMUSG00000033216.9, intron 4 of 4) protein_coding-intron (ENSMUSG00000033216.9, intron 5 of 6) 64183 ENSMUSG00000107472.1 ENSMUSG00000107472 ENSMUST00000203631 Gm44265 sense_intronic Interval_87328 chr19 47724079 47724289 + 0 NA Intergenic Intergenic 3149 ENSMUSG00000118149.1 ENSMUSG00000118149 ENSMUST00000235588 Gm50282 lincRNA Interval_96155 chr2 120134374 120135134 + 0 NA intron (ENSMUSG00000027293.13, intron 2 of 3) protein_coding-intron (ENSMUSG00000027293.13, intron 2 of 5) 2806 ENSMUSG00000027293.13 ENSMUSG00000027293 ENSMUST00000148073 Ehd4 protein_coding Interval_86028 chr19 35083855 35084247 + 0 NA TTS (ENSMUSG00000117865.1) lincRNA-TTS (ENSMUSG00000117865.1) 29586 ENSMUSG00000117865.1 ENSMUSG00000117865 ENSMUST00000235823 Gm50137 lincRNA Interval_145590 chr7 35756635 35757349 + 0 NA Intergenic Intergenic 22176 ENSMUSG00000044452.10 ENSMUSG00000044452 ENSMUST00000206003 Zfp507 protein_coding Interval_63952 chr16 4756443 4757687 + 0 NA promoter-TSS (ENSMUSG00000004070.15) protein_coding-promoter-TSS (ENSMUSG00000004070.15) -20678 ENSMUSG00000086464.2 ENSMUSG00000086464 ENSMUST00000127697 Gm15835 lincRNA Interval_99372 chr2 160378076 160378761 + 0 NA Intergenic Intergenic -11353 ENSMUSG00000074622.4 ENSMUSG00000074622 ENSMUST00000099126 Mafb protein_coding Interval_41162 chr12 111562878 111563410 + 0 NA Intergenic Intergenic -4134 ENSMUSG00000113462.1 ENSMUSG00000113462 ENSMUST00000220847 Gm48248 processed_pseudogene Interval_18347 chr10 85101992 85103821 + 0 NA promoter-TSS (ENSMUSG00000050035.7) protein_coding-promoter-TSS (ENSMUSG00000050035.7) 163 ENSMUSG00000060935.6 ENSMUSG00000060935 ENSMUST00000216771 Tmem263 protein_coding Interval_173720 chrX 102790950 102791350 + 0 NA Intergenic Intergenic -3148 ENSMUSG00000082191.1 ENSMUSG00000082191 ENSMUST00000121332 Gm5166 unprocessed_pseudogene Interval_58633 chr15 36706037 36706713 + 0 NA Intergenic Intergenic -10710 ENSMUSG00000115127.1 ENSMUSG00000115127 ENSMUST00000226482 Gm46515 lincRNA Interval_79451 chr18 31976843 31977160 + 0 NA exon (ENSMUSG00000024388.11, exon 26 of 47) protein_coding-exon (ENSMUSG00000024388.11, exon 26 of 47) 6367 ENSMUSG00000024388.11 ENSMUSG00000024388 ENSMUST00000238990 Myo7b protein_coding Interval_126224 chr5 83114679 83115144 + 0 NA Intergenic Intergenic -73907 ENSMUSG00000106606.1 ENSMUSG00000106606 ENSMUST00000199513 Gm43217 processed_pseudogene Interval_139845 chr6 110916086 110916298 + 0 NA intron (ENSMUSG00000056755.13, intron 3 of 9) protein_coding-intron (ENSMUSG00000056755.13, intron 2 of 10) 177842 ENSMUSG00000092603.1 ENSMUSG00000092603 ENSMUST00000174010 Gm20386 processed_pseudogene Interval_136554 chr6 55511624 55512551 + 0 NA Intergenic Intergenic -21419 ENSMUSG00000104746.1 ENSMUSG00000104746 ENSMUST00000196358 Gm44352 miRNA Interval_139199 chr6 97114494 97115260 + 0 NA intron (ENSMUSG00000035245.12, intron 3 of 5) protein_coding-intron (ENSMUSG00000035245.12, intron 15 of 17) -33317 ENSMUSG00000107502.1 ENSMUSG00000107502 ENSMUST00000203184 Gm44065 TEC Interval_68149 chr16 65737550 65738487 + 0 NA Intergenic Intergenic -55353 ENSMUSG00000116622.1 ENSMUSG00000116622 ENSMUST00000231905 Gm5221 processed_pseudogene Interval_134838 chr6 32145071 32145364 + 0 NA exon (ENSMUSG00000029765.12, exon 32 of 32) protein_coding-exon (ENSMUSG00000029765.12, exon 32 of 32) 33074 ENSMUSG00000085616.1 ENSMUSG00000085616 ENSMUST00000140465 Gm13850 lincRNA Interval_20796 chr10 121004869 121005117 + 0 NA Intergenic Intergenic -3932 ENSMUSG00000112192.1 ENSMUSG00000112192 ENSMUST00000219168 Gm48341 lincRNA Interval_100959 chr2 173639126 173639785 + 0 NA intron (ENSMUSG00000055897.13, intron 2 of 14) transcribed_unprocessed_pseudogene-intron (ENSMUSG00000055897.13, intron 1 of 1) -20305 ENSMUSG00000027519.10 ENSMUSG00000027519 ENSMUST00000109110 Rab22a protein_coding Interval_117466 chr4 123927530 123927801 + 0 NA intron (ENSMUSG00000028646.16, intron 5 of 6) protein_coding-intron (ENSMUSG00000028646.16, intron 5 of 6) 1431 ENSMUSG00000082515.1 ENSMUSG00000082515 ENSMUST00000118389 Gm12902 processed_pseudogene Interval_153999 chr8 11772400 11772895 + 0 NA intron (ENSMUSG00000031511.16, intron 1 of 5) protein_coding-intron (ENSMUSG00000031511.16, intron 2 of 17) -24807 ENSMUSG00000031511.16 ENSMUSG00000031511 ENSMUST00000151225 Arhgef7 protein_coding Interval_104419 chr3 65482310 65484666 + 0 NA Intergenic Intergenic 11547 ENSMUSG00000103513.1 ENSMUSG00000103513 ENSMUST00000193896 Gm34780 TEC Interval_130702 chr5 129880231 129881041 + 0 NA TTS (ENSMUSG00000070493.3) protein_coding-TTS (ENSMUSG00000070493.3) -1548 ENSMUSG00000025537.12 ENSMUSG00000025537 ENSMUST00000200922 Phkg1 protein_coding Interval_147504 chr7 67802791 67804169 + 0 NA promoter-TSS (ENSMUSG00000097697.2) lincRNA-promoter-TSS (ENSMUSG00000097697.2) 659 ENSMUSG00000097697.2 ENSMUSG00000097697 ENSMUST00000208257 4833412C05Rik lincRNA Interval_63055 chr15 98863827 98864014 + 0 NA exon (ENSMUSG00000048154.17, exon 11 of 55) protein_coding-exon (ENSMUSG00000048154.17, exon 11 of 55) 8693 ENSMUSG00000115980.1 ENSMUSG00000115980 ENSMUST00000230986 Gm49437 TEC Interval_15172 chr10 43057784 43058058 + 0 NA intron (ENSMUSG00000038248.8, intron 5 of 6) protein_coding-intron (ENSMUSG00000038248.8, intron 5 of 6) 22928 ENSMUSG00000111171.1 ENSMUSG00000111171 ENSMUST00000213469 Gm47815 antisense Interval_1437 chr1 23372820 23373285 + 0 NA intron (ENSMUSG00000026158.11, intron 7 of 7) protein_coding-intron (ENSMUSG00000026158.11, intron 6 of 6) 24720 ENSMUSG00000026158.11 ENSMUSG00000026158 ENSMUST00000189537 Ogfrl1 protein_coding Interval_91318 chr2 37748270 37748881 + 0 NA Intergenic Intergenic -42596 ENSMUSG00000035403.10 ENSMUSG00000035403 ENSMUST00000137693 Crb2 protein_coding Interval_150015 chr7 104840912 104841152 + 0 NA exon (ENSMUSG00000062369.2, exon 2 of 2) protein_coding-exon (ENSMUSG00000062369.2, exon 2 of 2) 1571 ENSMUSG00000062369.2 ENSMUSG00000062369 ENSMUST00000076501 Usp17lb protein_coding Interval_75943 chr17 73305578 73306018 + 0 NA TTS (ENSMUSG00000043705.7) protein_coding-TTS (ENSMUSG00000043705.7) 53253 ENSMUSG00000117292.1 ENSMUSG00000117292 ENSMUST00000233479 E330032C10Rik lincRNA Interval_76456 chr17 80298935 80299247 + 0 NA Intergenic Intergenic 8888 ENSMUSG00000045257.10 ENSMUSG00000045257 ENSMUST00000061703 Morn2 protein_coding Interval_12416 chr1 193254007 193254401 + 0 NA intron (ENSMUSG00000026639.18, intron 2 of 2) protein_coding-intron (ENSMUSG00000016194.14, intron 1 of 6) 7633 ENSMUSG00000103089.1 ENSMUSG00000103089 ENSMUST00000192052 Gm38118 TEC Interval_111043 chr4 11454951 11455603 + 0 NA Intergenic Intergenic -30766 ENSMUSG00000040720.15 ENSMUSG00000040720 ENSMUST00000108307 Virma protein_coding Interval_112553 chr4 43084744 43085493 + 0 NA intron (ENSMUSG00000028456.18, intron 1 of 1) protein_coding-intron (ENSMUSG00000028456.18, intron 1 of 38) 39076 ENSMUSG00000096974.2 ENSMUSG00000096974 ENSMUST00000211208 Gm26881 antisense Interval_49785 chr13 115117613 115117876 + 0 NA Intergenic Intergenic 1617 ENSMUSG00000096021.1 ENSMUSG00000096021 ENSMUST00000122677 Gm25985 snRNA Interval_144236 chr7 23533439 23533708 + 0 NA Intergenic Intergenic 2701 ENSMUSG00000109182.1 ENSMUSG00000109182 ENSMUST00000207604 Gm18195 processed_pseudogene Interval_14094 chr10 26919512 26919800 + 0 NA Intergenic Intergenic -30084 ENSMUSG00000112751.1 ENSMUSG00000112751 ENSMUST00000220276 Gm48084 antisense Interval_74570 chr17 53492328 53492594 + 0 NA intron (ENSMUSG00000017831.8, intron 2 of 5) protein_coding-intron (ENSMUSG00000017831.8, intron 2 of 5) 8485 ENSMUSG00000117128.1 ENSMUSG00000117128 ENSMUST00000232747 Gm49915 antisense Interval_64826 chr16 16219135 16219728 + 0 NA intron (ENSMUSG00000041957.15, intron 1 of 2) protein_coding-intron (ENSMUSG00000041957.15, intron 1 of 12) 6113 ENSMUSG00000041957.15 ENSMUSG00000041957 ENSMUST00000039408 Pkp2 protein_coding Interval_147173 chr7 64048405 64049186 + 0 NA Intergenic Intergenic -7969 ENSMUSG00000108469.1 ENSMUSG00000108469 ENSMUST00000206525 Gm45054 lincRNA Interval_40286 chr12 103168971 103169658 + 0 NA intron (ENSMUSG00000021198.16, intron 47 of 51) protein_coding-intron (ENSMUSG00000021198.16, intron 42 of 46) 41125 ENSMUSG00000098628.1 ENSMUSG00000098628 ENSMUST00000183635 Gm27976 misc_RNA Interval_22963 chr11 18061019 18061586 + 0 NA Intergenic Intergenic -34684 ENSMUSG00000085453.1 ENSMUSG00000085453 ENSMUST00000150694 Gm12018 lincRNA Interval_34047 chr11 120182564 120184001 + 0 NA Intergenic Intergenic 5469 ENSMUSG00000075389.3 ENSMUSG00000075389 ENSMUST00000145437 2810410L24Rik processed_transcript Interval_120568 chr4 149425891 149427083 + 0 NA promoter-TSS (ENSMUSG00000028960.20) protein_coding-promoter-TSS (ENSMUSG00000028960.20) -502 ENSMUSG00000028960.20 ENSMUSG00000028960 ENSMUST00000131986 Ube4b protein_coding Interval_126360 chr5 87104921 87105187 + 0 NA Intergenic Intergenic -4659 ENSMUSG00000105625.1 ENSMUSG00000105625 ENSMUST00000199725 Gm31230 unprocessed_pseudogene Interval_27872 chr11 70539761 70540910 + 0 NA promoter-TSS (ENSMUSG00000020828.13) protein_coding-promoter-TSS (ENSMUSG00000020828.13) 265 ENSMUSG00000072768.1 ENSMUSG00000072768 ENSMUST00000100943 Gm10418 pseudogene Interval_44283 chr13 43336525 43336817 + 0 NA Intergenic Intergenic -28835 ENSMUSG00000054021.6 ENSMUSG00000054021 ENSMUST00000222106 Sirt5 protein_coding Interval_147040 chr7 59172495 59172903 + 0 NA TTS (ENSMUSG00000109308.1) processed_pseudogene-TTS (ENSMUSG00000109308.1) 1170 ENSMUSG00000109308.1 ENSMUSG00000109308 ENSMUST00000209062 Gm44743 processed_pseudogene Interval_56024 chr14 104636720 104637046 + 0 NA intron (ENSMUSG00000115432.1, intron 1 of 4) lincRNA-intron (ENSMUSG00000115432.1, intron 1 of 4) -2241 ENSMUSG00000115432.1 ENSMUSG00000115432 ENSMUST00000228036 D130009I18Rik lincRNA Interval_71936 chr17 27098774 27099255 + 0 NA TTS (ENSMUSG00000086898.1) antisense-TTS (ENSMUSG00000086898.1) 2426 ENSMUSG00000086898.1 ENSMUSG00000086898 ENSMUST00000143605 Itpr3os antisense Interval_126836 chr5 93695537 93695774 + 0 NA intron (ENSMUSG00000107346.1, intron 2 of 2) unprocessed_pseudogene-intron (ENSMUSG00000107346.1, intron 2 of 2) 2066 ENSMUSG00000107346.1 ENSMUSG00000107346 ENSMUST00000201381 Gm43225 unprocessed_pseudogene Interval_57171 chr15 7132757 7133041 + 0 NA TTS (ENSMUSG00000054263.12) protein_coding-TTS (ENSMUSG00000054263.12) 42285 ENSMUSG00000054263.12 ENSMUSG00000054263 ENSMUST00000171588 Lifr protein_coding Interval_9631 chr1 160510468 160510696 + 0 NA intron (ENSMUSG00000026721.16, intron 13 of 20) protein_coding-intron (ENSMUSG00000026721.16, intron 13 of 20) 63228 ENSMUSG00000104026.1 ENSMUSG00000104026 ENSMUST00000192582 Gm37212 TEC Interval_30141 chr11 89635203 89636334 + 0 NA intron (ENSMUSG00000047773.15, intron 4 of 21) protein_coding-intron (ENSMUSG00000047773.15, intron 2 of 16) 205498 ENSMUSG00000047773.15 ENSMUSG00000047773 ENSMUST00000207171 Ankfn1 protein_coding Interval_102777 chr3 30963073 30963510 + 0 NA intron (ENSMUSG00000037652.15, intron 2 of 13) protein_coding-intron (ENSMUSG00000037652.15, intron 2 of 16) -5653 ENSMUSG00000102369.1 ENSMUSG00000102369 ENSMUST00000194340 9530022L04Rik TEC Interval_130055 chr5 123973000 123974298 + 0 NA promoter-TSS (ENSMUSG00000000915.15) protein_coding-promoter-TSS (ENSMUSG00000000915.15) 11021 ENSMUSG00000061882.12 ENSMUSG00000061882 ENSMUST00000197673 Ccdc62 protein_coding Interval_113076 chr4 47524512 47526053 + 0 NA Intergenic Intergenic 50518 ENSMUSG00000053317.11 ENSMUSG00000053317 ENSMUST00000136685 Sec61b protein_coding Interval_41157 chr12 111547281 111549177 + 0 NA Intergenic Intergenic 7288 ENSMUSG00000064493.1 ENSMUSG00000064493 ENSMUST00000082559 Snora28 snoRNA Interval_159830 chr8 104145810 104146957 + 0 NA Intergenic Intergenic -6323 ENSMUSG00000109909.1 ENSMUSG00000109909 ENSMUST00000210429 Gm45663 TEC Interval_147851 chr7 74283515 74283766 + 0 NA exon (ENSMUSG00000025790.14, exon 10 of 10) protein_coding-exon (ENSMUSG00000025790.14, exon 10 of 10) 48082 ENSMUSG00000098303.1 ENSMUSG00000098303 ENSMUST00000184860 Gm27459 miRNA Interval_83045 chr18 80734750 80735927 + 0 NA TTS (ENSMUSG00000024566.10) protein_coding-TTS (ENSMUSG00000024566.10) 24649 ENSMUSG00000024566.10 ENSMUSG00000024566 ENSMUST00000225345 Atp9b protein_coding Interval_9296 chr1 156002543 156004087 + 0 NA Intergenic Intergenic 26692 ENSMUSG00000102964.1 ENSMUSG00000102964 ENSMUST00000193532 9430034N14Rik TEC Interval_29278 chr11 82613450 82614531 + 0 NA Intergenic Intergenic -17811 ENSMUSG00000065201.1 ENSMUSG00000065201 ENSMUST00000083267 Gm24612 snRNA Interval_40851 chr12 108855878 108856072 + 0 NA TTS (ENSMUSG00000048856.9) protein_coding-TTS (ENSMUSG00000048856.9) 6694 ENSMUSG00000088217.1 ENSMUSG00000088217 ENSMUST00000157592 Gm22079 snRNA Interval_16658 chr10 66886679 66887388 + 0 NA Intergenic Intergenic 4579 ENSMUSG00000112267.1 ENSMUSG00000112267 ENSMUST00000217953 Gm47903 lincRNA Interval_106970 chr3 102262339 102263845 + 0 NA intron (ENSMUSG00000105891.4, intron 1 of 4) lincRNA-intron (ENSMUSG00000105891.4, intron 1 of 2) 570 ENSMUSG00000105891.4 ENSMUSG00000105891 ENSMUST00000196659 A230001M10Rik lincRNA Interval_41169 chr12 111596702 111597471 + 0 NA intron (ENSMUSG00000007411.16, intron 2 of 15) protein_coding-intron (ENSMUSG00000007411.16, intron 2 of 15) -7425 ENSMUSG00000007411.16 ENSMUSG00000007411 ENSMUST00000221841 Mark3 protein_coding Interval_114524 chr4 82193394 82194161 + 0 NA Intergenic Intergenic 127820 ENSMUSG00000085022.2 ENSMUSG00000085022 ENSMUST00000161588 Gm5860 lincRNA Interval_35190 chr12 17937145 17937349 + 0 NA intron (ENSMUSG00000113536.1, intron 2 of 2) transcribed_unprocessed_pseudogene-intron (ENSMUSG00000113536.1, intron 1 of 1) 4083 ENSMUSG00000113536.1 ENSMUSG00000113536 ENSMUST00000221062 Gm49327 transcribed_unprocessed_pseudogene Interval_77358 chr17 88212237 88212421 + 0 NA Intergenic Intergenic 43842 ENSMUSG00000117369.1 ENSMUSG00000117369 ENSMUST00000233989 Gm31499 lincRNA Interval_152304 chr7 131575221 131575480 + 0 NA intron (ENSMUSG00000030849.18, intron 2 of 6) protein_coding-intron (ENSMUSG00000030849.18, intron 2 of 6) 14943 ENSMUSG00000066979.6 ENSMUSG00000066979 ENSMUST00000207442 Bub3 protein_coding Interval_171517 chr9 118989324 118989525 + 0 NA intron (ENSMUSG00000047409.13, intron 1 of 5) protein_coding-intron (ENSMUSG00000047409.13, intron 1 of 7) -42372 ENSMUSG00000065513.1 ENSMUSG00000065513 ENSMUST00000083579 Mir26a-1 miRNA Interval_126435 chr5 88564441 88566250 + 0 NA exon (ENSMUSG00000029291.11, exon 1 of 13) protein_coding-exon (ENSMUSG00000029291.11, exon 1 of 13) 10883 ENSMUSG00000070697.4 ENSMUSG00000070697 ENSMUST00000090413 Utp3 protein_coding Interval_133439 chr6 5026115 5027373 + 0 NA intron (ENSMUSG00000032827.15, intron 1 of 17) protein_coding-intron (ENSMUSG00000032827.15, intron 2 of 15) 67761 ENSMUSG00000097396.1 ENSMUSG00000097396 ENSMUST00000180645 Gm26556 TEC Interval_155631 chr8 35383985 35385562 + 0 NA exon (ENSMUSG00000046794.9, exon 2 of 2) protein_coding-exon (ENSMUSG00000046794.9, exon 2 of 2) -8381 ENSMUSG00000109698.1 ENSMUSG00000109698 ENSMUST00000210468 Gm45469 bidirectional_promoter_lncRNA Interval_115594 chr4 101213311 101213542 + 0 NA intron (ENSMUSG00000028530.14, intron 1 of 2) protein_coding-intron (ENSMUSG00000028530.14, intron 1 of 24) -2839 ENSMUSG00000082928.1 ENSMUSG00000082928 ENSMUST00000122052 Gm12785 processed_pseudogene Interval_127911 chr5 108899302 108899753 + 0 NA intron (ENSMUSG00000093479.1, intron 1 of 3) antisense-intron (ENSMUSG00000093479.1, intron 1 of 3) -3699 ENSMUSG00000105808.1 ENSMUSG00000105808 ENSMUST00000197347 Gm42627 processed_pseudogene Interval_166634 chr9 61445640 61446530 + 0 NA intron (ENSMUSG00000111033.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000111033.1, intron 1 of 2) 3494 ENSMUSG00000111033.1 ENSMUSG00000111033 ENSMUST00000214224 Gm34322 lincRNA Interval_24685 chr11 35898916 35899602 + 0 NA intron (ENSMUSG00000018849.6, intron 3 of 22) protein_coding-intron (ENSMUSG00000018849.6, intron 3 of 22) -45705 ENSMUSG00000018849.6 ENSMUSG00000018849 ENSMUST00000127086 Wwc1 protein_coding Interval_157588 chr8 71569344 71570966 + 0 NA promoter-TSS (ENSMUSG00000031808.7) protein_coding-promoter-TSS (ENSMUSG00000031808.7) -17 ENSMUSG00000031808.7 ENSMUSG00000031808 ENSMUST00000211811 Slc27a1 protein_coding Interval_117447 chr4 123731145 123731488 + 0 NA Intergenic Intergenic -13135 ENSMUSG00000028648.13 ENSMUSG00000028648 ENSMUST00000137312 Ndufs5 protein_coding Interval_121001 chr4 152145798 152146528 + 0 NA intron (ENSMUSG00000028943.18, intron 2 of 11) protein_coding-intron (ENSMUSG00000028943.18, intron 2 of 15) 6059 ENSMUSG00000028943.18 ENSMUSG00000028943 ENSMUST00000148075 Espn protein_coding Interval_24035 chr11 29676858 29678371 + 0 NA Intergenic Intergenic 12221 ENSMUSG00000083917.1 ENSMUSG00000083917 ENSMUST00000120906 Gm12093 processed_pseudogene Interval_31896 chr11 103677134 103677500 + 0 NA exon (ENSMUSG00000020946.13, exon 6 of 6) protein_coding-exon (ENSMUSG00000020946.13, exon 6 of 6) 20381 ENSMUSG00000020946.13 ENSMUSG00000020946 ENSMUST00000145265 Gosr2 protein_coding Interval_158013 chr8 78018311 78019299 + 0 NA Intergenic Intergenic -25205 ENSMUSG00000110382.1 ENSMUSG00000110382 ENSMUST00000209933 Gm29895 lincRNA Interval_137708 chr6 80911871 80912469 + 0 NA Intergenic Intergenic 85032 ENSMUSG00000108040.1 ENSMUSG00000108040 ENSMUST00000204868 Gm43900 TEC Interval_23942 chr11 28648337 28649998 + 0 NA Intergenic Intergenic -32397 ENSMUSG00000084966.1 ENSMUSG00000084966 ENSMUST00000146554 2810471M01Rik lincRNA Interval_150948 chr7 116635182 116635447 + 0 NA Intergenic Intergenic -10072 ENSMUSG00000084492.1 ENSMUSG00000084492 ENSMUST00000122543 n-R5s157 rRNA Interval_77561 chr17 91585698 91586145 + 0 NA intron (ENSMUSG00000117417.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000087425.1, intron 1 of 1) 19817 ENSMUSG00000117417.1 ENSMUSG00000117417 ENSMUST00000234155 Gm49991 lincRNA Interval_115861 chr4 105288917 105290347 + 0 NA Intergenic Intergenic 85314 ENSMUSG00000081819.1 ENSMUSG00000081819 ENSMUST00000118507 Gm12722 processed_pseudogene Interval_8557 chr1 142108838 142109530 + 0 NA Intergenic Intergenic 346630 ENSMUSG00000099671.2 ENSMUSG00000099671 ENSMUST00000191024 Gm18183 processed_pseudogene Interval_52890 chr14 51869784 51870004 + 0 NA Intergenic Intergenic -15024 ENSMUSG00000004561.14 ENSMUSG00000004561 ENSMUST00000077846 Mettl17 protein_coding Interval_114459 chr4 78859748 78860284 + 0 NA Intergenic Intergenic 162364 ENSMUSG00000083629.1 ENSMUSG00000083629 ENSMUST00000119326 Gm11262 processed_pseudogene Interval_96219 chr2 120582634 120582982 + 0 NA intron (ENSMUSG00000027287.14, intron 2 of 5) protein_coding-intron (ENSMUSG00000027287.14, intron 1 of 7) 15085 ENSMUSG00000027287.14 ENSMUSG00000027287 ENSMUST00000130759 Snap23 protein_coding Interval_83614 chr18 90579086 90581454 + 0 NA intron (ENSMUSG00000110277.2, intron 1 of 3) protein_coding-intron (ENSMUSG00000110277.2, intron 1 of 2) 493 ENSMUSG00000110277.2 ENSMUSG00000110277 ENSMUST00000210766 Gm45871 protein_coding Interval_65040 chr16 18636663 18637055 + 0 NA Intergenic Intergenic -10388 ENSMUSG00000072214.7 ENSMUSG00000072214 ENSMUST00000231622 Septin5 protein_coding Interval_74477 chr17 51677350 51678184 + 0 NA Intergenic Intergenic 70917 ENSMUSG00000102973.1 ENSMUSG00000102973 ENSMUST00000194215 E430014B02Rik TEC Interval_132182 chr5 143155051 143156205 + 0 NA Intergenic Intergenic -1549 ENSMUSG00000104836.1 ENSMUSG00000104836 ENSMUST00000198952 Gm44405 miRNA Interval_19827 chr10 109807735 109808069 + 0 NA intron (ENSMUSG00000020181.18, intron 14 of 40) protein_coding-intron (ENSMUSG00000020181.18, intron 12 of 38) 159123 ENSMUSG00000112260.1 ENSMUSG00000112260 ENSMUST00000219153 3110043J17Rik TEC Interval_156198 chr8 45916706 45917023 + 0 NA intron (ENSMUSG00000031636.7, intron 6 of 7) protein_coding-intron (ENSMUSG00000031636.7, intron 5 of 6) -4008 ENSMUSG00000110071.1 ENSMUSG00000110071 ENSMUST00000210432 Gm45512 TEC Interval_17271 chr10 75474631 75475294 + 0 NA intron (ENSMUSG00000033416.15, intron 2 of 3) protein_coding-intron (ENSMUSG00000033416.15, intron 5 of 8) 8430 ENSMUSG00000112764.1 ENSMUSG00000112764 ENSMUST00000218219 Gm48158 processed_pseudogene Interval_148141 chr7 79456696 79456975 + 0 NA promoter-TSS (ENSMUSG00000039176.17) protein_coding-promoter-TSS (ENSMUSG00000039176.17) -4913 ENSMUSG00000039176.17 ENSMUSG00000039176 ENSMUST00000125562 Polg protein_coding Interval_106183 chr3 94399064 94399348 + 0 NA TTS (ENSMUSG00000028150.14) protein_coding-TTS (ENSMUSG00000028150.14) 689 ENSMUSG00000044505.5 ENSMUSG00000044505 ENSMUST00000050975 Lingo4 protein_coding Interval_41870 chr13 3712279 3713348 + 0 NA Intergenic Intergenic -47012 ENSMUSG00000113759.1 ENSMUSG00000113759 ENSMUST00000223157 Gm47695 lincRNA Interval_59071 chr15 43037056 43037567 + 0 NA intron (ENSMUSG00000051920.7, intron 5 of 5) protein_coding-intron (ENSMUSG00000051920.7, intron 5 of 5) 133515 ENSMUSG00000051920.7 ENSMUSG00000051920 ENSMUST00000226402 Rspo2 protein_coding Interval_156792 chr8 60056209 60056763 + 0 NA Intergenic Intergenic -23104 ENSMUSG00000065727.1 ENSMUSG00000065727 ENSMUST00000083793 Gm26164 snRNA Interval_24046 chr11 29757177 29757380 + 0 NA intron (ENSMUSG00000044072.14, intron 4 of 13) protein_coding-intron (ENSMUSG00000044072.14, intron 32 of 41) 45821 ENSMUSG00000044072.14 ENSMUSG00000044072 ENSMUST00000109452 Eml6 protein_coding Interval_94634 chr2 92870082 92870643 + 0 NA intron (ENSMUSG00000086980.1, intron 1 of 1) processed_transcript-intron (ENSMUSG00000086980.1, intron 1 of 1) 2947 ENSMUSG00000082700.1 ENSMUSG00000082700 ENSMUST00000121350 Gm13792 processed_pseudogene Interval_158107 chr8 78776747 78777149 + 0 NA Intergenic Intergenic 1269 ENSMUSG00000109768.1 ENSMUSG00000109768 ENSMUST00000209348 Gm45446 processed_pseudogene Interval_108168 chr3 122113382 122113735 + 0 NA intron (ENSMUSG00000028125.14, intron 16 of 49) protein_coding-intron (ENSMUSG00000028125.14, intron 16 of 49) 39061 ENSMUSG00000105351.1 ENSMUSG00000105351 ENSMUST00000198223 Gm43157 processed_pseudogene Interval_107155 chr3 104008048 104008250 + 0 NA TTS (ENSMUSG00000058388.14) protein_coding-TTS (ENSMUSG00000058388.14) 39561 ENSMUSG00000058388.14 ENSMUSG00000058388 ENSMUST00000130385 Phtf1 protein_coding Interval_154209 chr8 13454439 13455875 + 0 NA promoter-TSS (ENSMUSG00000038457.17) protein_coding-promoter-TSS (ENSMUSG00000038457.17) 19968 ENSMUSG00000038457.17 ENSMUSG00000038457 ENSMUST00000209950 Tmem255b protein_coding Interval_91343 chr2 37930630 37931216 + 0 NA intron (ENSMUSG00000035392.17, intron 12 of 18) protein_coding-intron (ENSMUSG00000035392.17, intron 13 of 21) 88244 ENSMUSG00000107586.1 ENSMUSG00000107586 ENSMUST00000204461 Gm44283 TEC Interval_80269 chr18 38643696 38644036 + 0 NA TTS (ENSMUSG00000118257.1) lincRNA-TTS (ENSMUSG00000118257.1) 16579 ENSMUSG00000118257.1 ENSMUSG00000118257 ENSMUST00000134388 9630014M24Rik lincRNA Interval_121473 chr4 156023757 156024632 + 0 NA promoter-TSS (ENSMUSG00000087381.8) antisense-promoter-TSS (ENSMUSG00000087381.8) -370 ENSMUSG00000087381.8 ENSMUSG00000087381 ENSMUST00000126009 Gm16008 antisense Interval_24317 chr11 32324607 32324915 + 0 NA Intergenic Intergenic -23059 ENSMUSG00000040711.8 ENSMUSG00000040711 ENSMUST00000138771 Sh3pxd2b protein_coding Interval_11998 chr1 188660187 188661636 + 0 NA intron (ENSMUSG00000026609.15, intron 12 of 12) protein_coding-intron (ENSMUSG00000026609.15, intron 36 of 70) -37858 ENSMUSG00000077235.1 ENSMUSG00000077235 ENSMUST00000104047 Gm25095 snoRNA Interval_70305 chr17 8383536 8384710 + 0 NA TTS (ENSMUSG00000116704.1) processed_pseudogene-TTS (ENSMUSG00000116704.1) 537 ENSMUSG00000116704.1 ENSMUSG00000116704 ENSMUST00000231828 Gm5491 processed_pseudogene Interval_36858 chr12 54747788 54748247 + 0 NA intron (ENSMUSG00000005656.9, intron 11 of 11) protein_coding-intron (ENSMUSG00000005656.9, intron 13 of 13) -9395 ENSMUSG00000096206.1 ENSMUSG00000096206 ENSMUST00000178469 Gm22317 snRNA Interval_130998 chr5 134478783 134479132 + 0 NA Intergenic Intergenic 6489 ENSMUSG00000106802.1 ENSMUSG00000106802 ENSMUST00000200763 Gm42885 TEC Interval_121167 chr4 153725308 153725537 + 0 NA Intergenic Intergenic -150962 ENSMUSG00000077519.1 ENSMUSG00000077519 ENSMUST00000104331 Gm25880 snoRNA Interval_89482 chr2 20934075 20935003 + 0 NA intron (ENSMUSG00000036591.16, intron 2 of 25) protein_coding-intron (ENSMUSG00000036591.16, intron 2 of 25) -3150 ENSMUSG00000085206.1 ENSMUSG00000085206 ENSMUST00000124322 Gm13380 sense_intronic Interval_37714 chr12 71331983 71332339 + 0 NA Intergenic Intergenic -5467 ENSMUSG00000113278.1 ENSMUSG00000113278 ENSMUST00000221224 Gm33016 lincRNA Interval_14100 chr10 27013074 27013320 + 0 NA intron (ENSMUSG00000019899.17, intron 12 of 21) protein_coding-intron (ENSMUSG00000019899.17, intron 55 of 64) 47112 ENSMUSG00000112804.1 ENSMUSG00000112804 ENSMUST00000217928 Gm30534 processed_pseudogene Interval_107425 chr3 107558964 107559429 + 0 NA Intergenic Intergenic -4123 ENSMUSG00000055891.7 ENSMUSG00000055891 ENSMUST00000052853 Ubl4b protein_coding Interval_32544 chr11 108342812 108344455 + 0 NA promoter-TSS (ENSMUSG00000050965.14) protein_coding-promoter-TSS (ENSMUSG00000050965.14) -34244 ENSMUSG00000084916.1 ENSMUSG00000084916 ENSMUST00000137462 Gm11656 sense_intronic Interval_66454 chr16 33965862 33967593 + 0 NA exon (ENSMUSG00000086083.1, exon 2 of 2) antisense-exon (ENSMUSG00000086083.1, exon 2 of 2) 276 ENSMUSG00000022814.6 ENSMUSG00000022814 ENSMUST00000131990 Umps protein_coding Interval_116476 chr4 114296345 114296804 + 0 NA Intergenic Intergenic -110150 ENSMUSG00000070867.4 ENSMUSG00000070867 ENSMUST00000094894 Trabd2b protein_coding Interval_78483 chr18 13582104 13582570 + 0 NA intron (ENSMUSG00000117608.1, intron 2 of 5) lincRNA-intron (ENSMUSG00000117608.1, intron 2 of 5) 19063 ENSMUSG00000117608.1 ENSMUSG00000117608 ENSMUST00000234112 AC103362.1 lincRNA Interval_79030 chr18 24054036 24054685 + 0 NA Intergenic Intergenic 27564 ENSMUSG00000117500.1 ENSMUSG00000117500 ENSMUST00000234749 Gm18085 processed_pseudogene Interval_104803 chr3 73863486 73864261 + 0 NA Intergenic Intergenic -69173 ENSMUSG00000102859.1 ENSMUSG00000102859 ENSMUST00000194185 Gm8625 processed_pseudogene Interval_158052 chr8 78371797 78372422 + 0 NA intron (ENSMUSG00000037101.16, intron 9 of 10) protein_coding-intron (ENSMUSG00000037101.16, intron 12 of 13) 64536 ENSMUSG00000031688.4 ENSMUSG00000031688 ENSMUST00000034115 Pou4f2 protein_coding Interval_31546 chr11 101294232 101294436 + 0 NA promoter-TSS (ENSMUSG00000035086.13) protein_coding-promoter-TSS (ENSMUSG00000035086.13) 7917 ENSMUSG00000035086.13 ENSMUSG00000035086 ENSMUST00000137614 Becn1 protein_coding Interval_7144 chr1 127204672 127206615 + 0 NA intron (ENSMUSG00000036155.13, intron 1 of 7) protein_coding-intron (ENSMUSG00000036155.13, intron 1 of 17) 615 ENSMUSG00000036155.13 ENSMUSG00000036155 ENSMUST00000171405 Mgat5 protein_coding Interval_28427 chr11 75807722 75808269 + 0 NA intron (ENSMUSG00000087059.7, intron 2 of 2) processed_transcript-intron (ENSMUSG00000087059.7, intron 2 of 4) -11946 ENSMUSG00000020848.7 ENSMUSG00000020848 ENSMUST00000021209 Doc2b protein_coding Interval_94659 chr2 93110963 93111195 + 0 NA Intergenic Intergenic -12835 ENSMUSG00000087559.1 ENSMUSG00000087559 ENSMUST00000150159 Gm13802 lincRNA Interval_57366 chr15 9973342 9973817 + 0 NA Intergenic Intergenic -78247 ENSMUSG00000088156.1 ENSMUSG00000088156 ENSMUST00000157531 Gm26350 misc_RNA Interval_161538 chr8 121073363 121074190 + 0 NA exon (ENSMUSG00000097336.8, exon 2 of 6) processed_transcript-exon (ENSMUSG00000097336.8, exon 2 of 6) 9334 ENSMUSG00000097336.8 ENSMUSG00000097336 ENSMUST00000182264 Fendrr processed_transcript Interval_167395 chr9 68653220 68655614 + 0 NA promoter-TSS (ENSMUSG00000032238.17) protein_coding-promoter-TSS (ENSMUSG00000032238.17) 526 ENSMUSG00000032238.17 ENSMUSG00000032238 ENSMUST00000113624 Rora protein_coding Interval_45029 chr13 51610640 51611647 + 0 NA Intergenic Intergenic -34089 ENSMUSG00000062248.5 ENSMUSG00000062248 ENSMUST00000075853 Cks2 protein_coding Interval_58703 chr15 37222445 37223019 + 0 NA Intergenic Intergenic 10427 ENSMUSG00000089804.2 ENSMUSG00000089804 ENSMUST00000159411 Gm16136 antisense Interval_37228 chr12 61628386 61629156 + 0 NA intron (ENSMUSG00000035653.16, intron 1 of 1) protein_coding-intron (ENSMUSG00000035653.16, intron 1 of 3) 49097 ENSMUSG00000113456.1 ENSMUSG00000113456 ENSMUST00000221346 Gm30738 processed_pseudogene Interval_125352 chr5 66369031 66369601 + 0 NA intron (ENSMUSG00000029207.16, intron 5 of 12) protein_coding-intron (ENSMUSG00000029207.16, intron 9 of 17) 12398 ENSMUSG00000106910.1 ENSMUSG00000106910 ENSMUST00000202238 Gm16273 processed_pseudogene Interval_16162 chr10 61145887 61148163 + 0 NA promoter-TSS (ENSMUSG00000020097.14) protein_coding-promoter-TSS (ENSMUSG00000020097.14) 678 ENSMUSG00000020097.14 ENSMUSG00000020097 ENSMUST00000124896 Sgpl1 protein_coding Interval_16829 chr10 68861300 68862285 + 0 NA Intergenic Intergenic 42708 ENSMUSG00000112333.1 ENSMUSG00000112333 ENSMUST00000219825 1700048P04Rik lincRNA Interval_6392 chr1 106822651 106823278 + 0 NA Intergenic Intergenic -38210 ENSMUSG00000067006.12 ENSMUSG00000067006 ENSMUST00000112729 Serpinb5 protein_coding Interval_159816 chr8 104039543 104040542 + 0 NA Intergenic Intergenic -31107 ENSMUSG00000110019.1 ENSMUSG00000110019 ENSMUST00000211125 Gm8748 processed_pseudogene Interval_144380 chr7 24804816 24805166 + 0 NA Intergenic Intergenic -13804 ENSMUSG00000011350.15 ENSMUSG00000011350 ENSMUST00000155799 Gm5893 processed_transcript Interval_102576 chr3 27938376 27939935 + 0 NA intron (ENSMUSG00000027695.16, intron 1 of 26) protein_coding-intron (ENSMUSG00000027695.16, intron 1 of 26) -42787 ENSMUSG00000043164.3 ENSMUSG00000043164 ENSMUST00000058077 Tmem212 protein_coding Interval_140272 chr6 115972527 115973244 + 0 NA intron (ENSMUSG00000030123.15, intron 8 of 35) protein_coding-intron (ENSMUSG00000030123.15, intron 8 of 35) -16047 ENSMUSG00000030123.15 ENSMUSG00000030123 ENSMUST00000131590 Plxnd1 protein_coding Interval_115025 chr4 88683947 88684789 + 0 NA promoter-TSS (ENSMUSG00000078354.1) protein_coding-promoter-TSS (ENSMUSG00000078354.1) -456 ENSMUSG00000078354.1 ENSMUSG00000078354 ENSMUST00000105147 Ifna2 protein_coding Interval_174115 chrX 135574159 135575105 + 0 NA Intergenic Intergenic 24126 ENSMUSG00000031410.14 ENSMUSG00000031410 ENSMUST00000141310 Nxf7 protein_coding Interval_137852 chr6 82939263 82940120 + 0 NA promoter-TSS (ENSMUSG00000000627.15) protein_coding-promoter-TSS (ENSMUSG00000000627.15) 78 ENSMUSG00000000627.15 ENSMUSG00000000627 ENSMUST00000203271 Sema4f protein_coding Interval_108856 chr3 132735659 132735869 + 0 NA intron (ENSMUSG00000028030.12, intron 17 of 25) protein_coding-intron (ENSMUSG00000028030.12, intron 17 of 23) -31643 ENSMUSG00000105719.1 ENSMUSG00000105719 ENSMUST00000200026 Gm42872 TEC Interval_46488 chr13 66546427 66548955 + 0 NA Intergenic Intergenic 3529 ENSMUSG00000114434.1 ENSMUSG00000114434 ENSMUST00000224388 Gm48360 processed_pseudogene Interval_131547 chr5 138011562 138012129 + 0 NA Intergenic Intergenic -5574 ENSMUSG00000100543.1 ENSMUSG00000100543 ENSMUST00000188304 Gm29127 processed_pseudogene Interval_103406 chr3 41332319 41332655 + 0 NA Intergenic Intergenic -21660 ENSMUSG00000105297.1 ENSMUSG00000105297 ENSMUST00000196142 1700052H01Rik lincRNA Interval_58186 chr15 30506660 30506888 + 0 NA intron (ENSMUSG00000022240.10, intron 3 of 5) protein_coding-intron (ENSMUSG00000022240.10, intron 3 of 22) 77930 ENSMUSG00000115073.1 ENSMUSG00000115073 ENSMUST00000226263 Gm49283 TEC Interval_159900 chr8 104953259 104953466 + 0 NA intron (ENSMUSG00000062826.7, intron 7 of 10) protein_coding-intron (ENSMUSG00000062826.7, intron 9 of 12) 6006 ENSMUSG00000062826.7 ENSMUSG00000062826 ENSMUST00000212820 Ces2f protein_coding Interval_45650 chr13 56562481 56563311 + 0 NA Intergenic Intergenic -14487 ENSMUSG00000021539.9 ENSMUSG00000021539 ENSMUST00000225183 Lect2 protein_coding Interval_132347 chr5 144366505 144366854 + 0 NA intron (ENSMUSG00000047843.16, intron 3 of 3) protein_coding-intron (ENSMUSG00000047843.16, intron 3 of 3) 8756 ENSMUSG00000104600.4 ENSMUSG00000104600 ENSMUST00000196370 Dmrt1i sense_intronic Interval_174660 chrX 162704103 162704950 + 0 NA Intergenic Intergenic 6914 ENSMUSG00000082571.1 ENSMUSG00000082571 ENSMUST00000122208 Gm8737 processed_pseudogene Interval_6509 chr1 113571975 113572183 + 0 NA Intergenic Intergenic -6096 ENSMUSG00000102105.1 ENSMUSG00000102105 ENSMUST00000186856 Gm17946 processed_pseudogene Interval_154701 chr8 22691060 22691720 + 0 NA TTS (ENSMUSG00000031537.15) protein_coding-TTS (ENSMUSG00000031537.15) 5125 ENSMUSG00000085199.1 ENSMUSG00000085199 ENSMUST00000143638 Gm15346 antisense Interval_29323 chr11 82936182 82936381 + 0 NA intron (ENSMUSG00000018845.14, intron 15 of 19) protein_coding-intron (ENSMUSG00000018845.14, intron 15 of 19) -2899 ENSMUSG00000086058.1 ENSMUSG00000086058 ENSMUST00000156395 Unc45bos processed_transcript Interval_61174 chr15 79669320 79671891 + 0 NA promoter-TSS (ENSMUSG00000022427.4) protein_coding-promoter-TSS (ENSMUSG00000022427.4) -276 ENSMUSG00000022427.4 ENSMUSG00000022427 ENSMUST00000127292 Tomm22 protein_coding Interval_126815 chr5 93146011 93146412 + 0 NA intron (ENSMUSG00000058013.11, intron 3 of 3) protein_coding-intron (ENSMUSG00000058013.11, intron 2 of 9) -30759 ENSMUSG00000107019.1 ENSMUSG00000107019 ENSMUST00000202150 Gm43682 TEC Interval_20213 chr10 116017653 116019611 + 0 NA exon (ENSMUSG00000020151.16, exon 1 of 14) protein_coding-exon (ENSMUSG00000020151.16, exon 1 of 14) 95070 ENSMUSG00000074734.3 ENSMUSG00000074734 ENSMUST00000219858 Taf7l2 protein_coding Interval_46200 chr13 62452471 62453175 + 0 NA TTS (ENSMUSG00000055228.8) protein_coding-TTS (ENSMUSG00000055228.8) -1214 ENSMUSG00000113841.1 ENSMUSG00000113841 ENSMUST00000221260 Gm48701 TEC Interval_106349 chr3 95536187 95536687 + 0 NA intron (ENSMUSG00000038642.10, intron 2 of 7) protein_coding-intron (ENSMUSG00000038642.10, intron 2 of 7) 6019 ENSMUSG00000083822.1 ENSMUSG00000083822 ENSMUST00000121058 Hmgb1-ps5 processed_pseudogene Interval_59207 chr15 48270003 48270471 + 0 NA intron (ENSMUSG00000022311.15, intron 9 of 70) protein_coding-intron (ENSMUSG00000022311.15, intron 9 of 70) -281071 ENSMUSG00000065742.1 ENSMUSG00000065742 ENSMUST00000083808 Gm25007 snRNA Interval_142484 chr6 142778838 142779961 + 0 NA Intergenic Intergenic 22624 ENSMUSG00000030282.14 ENSMUSG00000030282 ENSMUST00000146643 Cmas protein_coding Interval_67899 chr16 58976992 58978108 + 0 NA Intergenic Intergenic 17347 ENSMUSG00000108535.1 ENSMUSG00000108535 ENSMUST00000205353 Gm45071 unprocessed_pseudogene Interval_165520 chr9 48978092 48978688 + 0 NA Intergenic Intergenic -13400 ENSMUSG00000008590.4 ENSMUSG00000008590 ENSMUST00000008734 Htr3b protein_coding Interval_41647 chr12 117351585 117352127 + 0 NA Intergenic Intergenic -14844 ENSMUSG00000101930.1 ENSMUSG00000101930 ENSMUST00000186454 Gm5441 antisense Interval_155268 chr8 29348089 29348498 + 0 NA Intergenic Intergenic -61312 ENSMUSG00000110331.1 ENSMUSG00000110331 ENSMUST00000209275 Nudc-ps1 processed_pseudogene Interval_24117 chr11 30482776 30483707 + 0 NA Intergenic Intergenic -11414 ENSMUSG00000040919.13 ENSMUSG00000040919 ENSMUST00000152718 4930505A04Rik protein_coding Interval_93022 chr2 69635128 69636133 + 0 NA Intergenic Intergenic -11600 ENSMUSG00000063145.10 ENSMUSG00000063145 ENSMUST00000127806 Bbs5 protein_coding Interval_76700 chr17 83572506 83572749 + 0 NA Intergenic Intergenic 59268 ENSMUSG00000045053.2 ENSMUSG00000045053 ENSMUST00000051482 Kcng3 protein_coding Interval_49907 chr13 118137715 118138677 + 0 NA Intergenic Intergenic 90876 ENSMUSG00000114713.1 ENSMUSG00000114713 ENSMUST00000225643 Gm9633 processed_pseudogene Interval_52288 chr14 43938964 43939777 + 0 NA Intergenic Intergenic -1627 ENSMUSG00000090265.1 ENSMUSG00000090265 ENSMUST00000161130 Gm9550 processed_pseudogene Interval_63752 chr15 103239287 103241106 + 0 NA promoter-TSS (ENSMUSG00000046434.16) protein_coding-promoter-TSS (ENSMUSG00000046434.16) -298 ENSMUSG00000046434.16 ENSMUSG00000046434 ENSMUST00000231141 Hnrnpa1 protein_coding Interval_148807 chr7 88258691 88260144 + 0 NA Intergenic Intergenic -37435 ENSMUSG00000030560.17 ENSMUSG00000030560 ENSMUST00000152834 Ctsc protein_coding Interval_97121 chr2 131434389 131434641 + 0 NA Intergenic Intergenic -19270 ENSMUSG00000081652.1 ENSMUSG00000081652 ENSMUST00000119763 Gm14283 processed_pseudogene Interval_76189 chr17 76551623 76551895 + 0 NA Intergenic Intergenic -212564 ENSMUSG00000117598.1 ENSMUSG00000117598 ENSMUST00000234248 Gm50028 lincRNA Interval_39374 chr12 86964519 86964881 + 0 NA TTS (ENSMUSG00000034157.12) protein_coding-TTS (ENSMUSG00000034157.12) 12043 ENSMUSG00000034157.12 ENSMUSG00000034157 ENSMUST00000191463 Cipc protein_coding Interval_55740 chr14 99457094 99458827 + 0 NA Intergenic Intergenic 16303 ENSMUSG00000115178.1 ENSMUSG00000115178 ENSMUST00000227904 Gm49220 processed_pseudogene Interval_123405 chr5 32287650 32288405 + 0 NA intron (ENSMUSG00000029134.14, intron 14 of 38) protein_coding-intron (ENSMUSG00000029134.14, intron 14 of 57) 24092 ENSMUSG00000081200.1 ENSMUSG00000081200 ENSMUST00000118876 Gm15615 processed_pseudogene Interval_144227 chr7 23361918 23362247 + 0 NA exon (ENSMUSG00000045693.8, exon 9 of 9) protein_coding-exon (ENSMUSG00000045693.8, exon 9 of 9) 4957 ENSMUSG00000109325.1 ENSMUSG00000109325 ENSMUST00000208495 Krt8-ps processed_pseudogene Interval_9922 chr1 164127292 164127549 + 0 NA intron (ENSMUSG00000026580.16, intron 4 of 15) protein_coding-intron (ENSMUSG00000026580.16, intron 4 of 15) 12156 ENSMUSG00000026580.16 ENSMUSG00000026580 ENSMUST00000162102 Selp protein_coding Interval_105890 chr3 89941127 89941595 + 0 NA exon (ENSMUSG00000060671.12, exon 27 of 27) protein_coding-exon (ENSMUSG00000060671.12, exon 27 of 27) 5111 ENSMUSG00000060671.12 ENSMUSG00000060671 ENSMUST00000171422 Atp8b2 protein_coding Interval_39167 chr12 85539007 85540045 + 0 NA intron (ENSMUSG00000114163.1, intron 2 of 2) lincRNA-intron (ENSMUSG00000114163.1, intron 2 of 2) 9928 ENSMUSG00000114163.1 ENSMUSG00000114163 ENSMUST00000220590 Gm32296 lincRNA Interval_167178 chr9 65919100 65919489 + 0 NA intron (ENSMUSG00000032384.16, intron 1 of 12) protein_coding-intron (ENSMUSG00000032384.16, intron 1 of 13) -10500 ENSMUSG00000032386.15 ENSMUSG00000032386 ENSMUST00000139346 Trip4 protein_coding Interval_80703 chr18 46491268 46491584 + 0 NA Intergenic Intergenic -5659 ENSMUSG00000118116.1 ENSMUSG00000118116 ENSMUST00000235462 Gm3720 processed_pseudogene Interval_11058 chr1 179047892 179048197 + 0 NA intron (ENSMUSG00000055067.15, intron 5 of 7) protein_coding-intron (ENSMUSG00000055067.15, intron 6 of 8) -130430 ENSMUSG00000089713.1 ENSMUSG00000089713 ENSMUST00000162545 Gm16564 antisense Interval_67474 chr16 49408475 49408793 + 0 NA Intergenic Intergenic 3996 ENSMUSG00000116948.1 ENSMUSG00000116948 ENSMUST00000231844 Gm4802 processed_pseudogene Interval_56680 chr14 121339468 121340433 + 0 NA intron (ENSMUSG00000063410.8, intron 1 of 1) protein_coding-intron (ENSMUSG00000063410.8, intron 1 of 10) 40061 ENSMUSG00000063410.8 ENSMUSG00000063410 ENSMUST00000226158 Stk24 protein_coding Interval_117766 chr4 126110627 126111538 + 0 NA intron (ENSMUSG00000042608.15, intron 1 of 10) protein_coding-intron (ENSMUSG00000042608.15, intron 1 of 10) 7081 ENSMUSG00000042608.15 ENSMUSG00000042608 ENSMUST00000134369 Stk40 protein_coding Interval_167421 chr9 68966705 68966915 + 0 NA intron (ENSMUSG00000032238.17, intron 1 of 5) protein_coding-intron (ENSMUSG00000032238.17, intron 1 of 10) 312919 ENSMUSG00000032238.17 ENSMUSG00000032238 ENSMUST00000113624 Rora protein_coding Interval_75636 chr17 69580042 69580438 + 0 NA Intergenic Intergenic 9834 ENSMUSG00000117071.1 ENSMUSG00000117071 ENSMUST00000233261 Gm9598 processed_pseudogene Interval_59005 chr15 41626187 41627255 + 0 NA intron (ENSMUSG00000022307.16, intron 2 of 15) protein_coding-intron (ENSMUSG00000022307.16, intron 2 of 15) 162190 ENSMUSG00000097232.1 ENSMUSG00000097232 ENSMUST00000180418 Gm26854 antisense Interval_21763 chr11 4217706 4218938 + 0 NA promoter-TSS (ENSMUSG00000020424.3) protein_coding-promoter-TSS (ENSMUSG00000020424.3) 97 ENSMUSG00000020424.3 ENSMUSG00000020424 ENSMUST00000020699 Castor1 protein_coding Interval_83222 chr18 82848222 82849886 + 0 NA Intergenic Intergenic -6840 ENSMUSG00000097738.2 ENSMUSG00000097738 ENSMUST00000180631 4930445N18Rik lincRNA Interval_150507 chr7 111305153 111305557 + 0 NA Intergenic Intergenic -60943 ENSMUSG00000109808.1 ENSMUSG00000109808 ENSMUST00000211799 5430402P08Rik lincRNA Interval_128175 chr5 111522256 111523533 + 0 NA Intergenic Intergenic -58667 ENSMUSG00000052848.7 ENSMUSG00000052848 ENSMUST00000198458 C130026L21Rik lincRNA Interval_163092 chr9 15224954 15226430 + 0 NA Intergenic Intergenic -13353 ENSMUSG00000031937.7 ENSMUSG00000031937 ENSMUST00000034413 Vstm5 protein_coding Interval_100602 chr2 170409214 170409572 + 0 NA intron (ENSMUSG00000013523.13, intron 3 of 4) protein_coding-intron (ENSMUSG00000013523.13, intron 3 of 12) 4212 ENSMUSG00000086970.1 ENSMUSG00000086970 ENSMUST00000133586 Bcas1os1 antisense Interval_118578 chr4 132601743 132602867 + 0 NA Intergenic Intergenic -36741 ENSMUSG00000028886.15 ENSMUSG00000028886 ENSMUST00000130833 Eya3 protein_coding Interval_90818 chr2 32781340 32782200 + 0 NA intron (ENSMUSG00000038987.8, intron 1 of 8) protein_coding-intron (ENSMUSG00000038987.8, intron 1 of 8) -2624 ENSMUSG00000038987.8 ENSMUSG00000038987 ENSMUST00000150918 Cfap157 protein_coding Interval_217 KQ030494.1 506035 506812 + 0 NA NA NA NA NA Interval_51166 chr14 24310356 24311721 + 0 NA Intergenic Intergenic 4224 ENSMUSG00000118624.1 ENSMUSG00000118624 ENSMUST00000239329 AC161374.3 transcribed_unprocessed_pseudogene Interval_24048 chr11 29779491 29780485 + 0 NA intron (ENSMUSG00000044072.14, intron 26 of 41) protein_coding-intron (ENSMUSG00000044072.14, intron 26 of 41) 23111 ENSMUSG00000044072.14 ENSMUSG00000044072 ENSMUST00000109452 Eml6 protein_coding Interval_62440 chr15 92903795 92904275 + 0 NA Intergenic Intergenic -29854 ENSMUSG00000116309.1 ENSMUSG00000116309 ENSMUST00000230405 Gm49418 lincRNA Interval_107787 chr3 114903990 114905070 + 0 NA promoter-TSS (ENSMUSG00000027965.15) protein_coding-promoter-TSS (ENSMUSG00000027965.15) -105 ENSMUSG00000027965.15 ENSMUSG00000027965 ENSMUST00000051309 Olfm3 protein_coding Interval_87556 chr19 53419961 53421878 + 0 NA Intergenic Intergenic 30130 ENSMUSG00000117768.1 ENSMUSG00000117768 ENSMUST00000238029 8030456M14Rik bidirectional_promoter_lncRNA Interval_172192 chrX 8732875 8733216 + 0 NA Intergenic Intergenic -15387 ENSMUSG00000035371.8 ENSMUSG00000035371 ENSMUST00000103001 Ssx9 protein_coding Interval_155639 chr8 35468674 35469520 + 0 NA exon (ENSMUSG00000031527.7, exon 7 of 7) protein_coding-exon (ENSMUSG00000031527.7, exon 7 of 7) 12311 ENSMUSG00000031527.7 ENSMUSG00000031527 ENSMUST00000210483 Eri1 protein_coding Interval_41246 chr12 112112485 112114343 + 0 NA exon (ENSMUSG00000037686.6, exon 3 of 3) protein_coding-exon (ENSMUSG00000037686.6, exon 3 of 3) -4105 ENSMUSG00000106228.1 ENSMUSG00000106228 ENSMUST00000199383 Mir3073b miRNA Interval_41473 chr12 114775619 114775972 + 0 NA Intergenic Intergenic -2434 ENSMUSG00000094241.2 ENSMUSG00000094241 ENSMUST00000191861 Ighv1-24 IG_V_gene Interval_42549 chr13 15200868 15201393 + 0 NA Intergenic Intergenic 82498 ENSMUSG00000113389.1 ENSMUSG00000113389 ENSMUST00000223112 Gm9512 processed_pseudogene Interval_161400 chr8 120249453 120251251 + 0 NA intron (ENSMUSG00000031822.20, intron 1 of 2) protein_coding-intron (ENSMUSG00000092329.1, intron 1 of 15) -22122 ENSMUSG00000097960.1 ENSMUSG00000097960 ENSMUST00000183235 A330074K22Rik lincRNA Interval_169190 chr9 95417128 95417636 + 0 NA Intergenic Intergenic -5726 ENSMUSG00000101281.1 ENSMUSG00000101281 ENSMUST00000185532 Gm8449 processed_pseudogene Interval_20534 chr10 118640991 118641230 + 0 NA Intergenic Intergenic 74616 ENSMUSG00000112029.1 ENSMUSG00000112029 ENSMUST00000219594 Gm33337 lincRNA Interval_4845 chr1 80200422 80200693 + 0 NA intron (ENSMUSG00000043230.2, intron 3 of 3) protein_coding-intron (ENSMUSG00000043230.2, intron 1 of 1) 15838 ENSMUSG00000099552.1 ENSMUSG00000099552 ENSMUST00000185548 9830004L10Rik lincRNA Interval_121849 chr5 8825799 8826006 + 0 NA intron (ENSMUSG00000028970.9, intron 14 of 21) protein_coding-intron (ENSMUSG00000028970.9, intron 15 of 27) -5245 ENSMUSG00000105870.1 ENSMUSG00000105870 ENSMUST00000197499 7330423F06Rik TEC Interval_11264 chr1 180577030 180577460 + 0 NA intron (ENSMUSG00000026496.11, intron 2 of 2) protein_coding-intron (ENSMUSG00000026496.11, intron 2 of 22) -9956 ENSMUSG00000098926.1 ENSMUSG00000098926 ENSMUST00000183443 Mir6904 miRNA Interval_70124 chr17 5490462 5493479 + 0 NA promoter-TSS (ENSMUSG00000034265.8) protein_coding-promoter-TSS (ENSMUSG00000034265.8) -587 ENSMUSG00000034265.8 ENSMUSG00000034265 ENSMUST00000089185 Zdhhc14 protein_coding Interval_110489 chr3 159548516 159549067 + 0 NA Intergenic Intergenic -50427 ENSMUSG00000028174.12 ENSMUSG00000028174 ENSMUST00000029824 Rpe65 protein_coding Interval_139959 chr6 113063329 113064063 + 0 NA intron (ENSMUSG00000030264.14, intron 6 of 9) protein_coding-intron (ENSMUSG00000030264.14, intron 6 of 9) 2998 ENSMUSG00000077431.1 ENSMUSG00000077431 ENSMUST00000104243 Gm22591 snRNA Interval_25886 chr11 52333642 52333828 + 0 NA Intergenic Intergenic -40365 ENSMUSG00000020402.11 ENSMUSG00000020402 ENSMUST00000153339 Vdac1 protein_coding Interval_89955 chr2 26818898 26819102 + 0 NA Intergenic Intergenic 37798 ENSMUSG00000015787.15 ENSMUSG00000015787 ENSMUST00000102900 Abo protein_coding Interval_4253 chr1 72199701 72199932 + 0 NA intron (ENSMUSG00000039395.8, intron 1 of 4) protein_coding-intron (ENSMUSG00000039395.8, intron 1 of 4) 12491 ENSMUSG00000039395.8 ENSMUSG00000039395 ENSMUST00000048860 Mreg protein_coding Interval_55570 chr14 92862742 92863630 + 0 NA intron (ENSMUSG00000115720.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000115720.1, intron 1 of 1) 3380 ENSMUSG00000115720.1 ENSMUSG00000115720 ENSMUST00000226822 4930433E05Rik lincRNA Interval_45701 chr13 57055236 57055969 + 0 NA Intergenic Intergenic -124654 ENSMUSG00000077279.1 ENSMUSG00000077279 ENSMUST00000104091 Gm22777 snoRNA Interval_824 chr1 12020316 12021140 + 0 NA Intergenic Intergenic -100232 ENSMUSG00000101610.1 ENSMUSG00000101610 ENSMUST00000187748 Gm7560 processed_pseudogene Interval_14995 chr10 41769574 41770903 + 0 NA intron (ENSMUSG00000102114.2, intron 1 of 3) protein_coding-intron (ENSMUSG00000019813.16, intron 1 of 10) 23517 ENSMUSG00000102114.2 ENSMUSG00000102114 ENSMUST00000190793 BC048559 antisense Interval_169432 chr9 97214532 97214853 + 0 NA Intergenic Intergenic -3812 ENSMUSG00000101000.1 ENSMUSG00000101000 ENSMUST00000186275 Gm5371 processed_pseudogene Interval_63950 chr16 4725752 4727123 + 0 NA promoter-TSS (ENSMUSG00000004070.15) protein_coding-promoter-TSS (ENSMUSG00000004070.15) 76 ENSMUSG00000004070.15 ENSMUSG00000004070 ENSMUST00000121529 Hmox2 protein_coding Interval_9170 chr1 154559588 154560391 + 0 NA intron (ENSMUSG00000004110.17, intron 9 of 11) protein_coding-intron (ENSMUSG00000004110.17, intron 7 of 46) -236381 ENSMUSG00000100031.1 ENSMUSG00000100031 ENSMUST00000185981 Gm18727 processed_pseudogene Interval_172586 chrX 37109720 37110850 + 0 NA promoter-TSS (ENSMUSG00000036572.16) protein_coding-promoter-TSS (ENSMUSG00000036572.16) 37 ENSMUSG00000036572.16 ENSMUSG00000036572 ENSMUST00000133481 Upf3b protein_coding Interval_127336 chr5 103160417 103162148 + 0 NA TTS (ENSMUSG00000046709.18) protein_coding-TTS (ENSMUSG00000046709.18) 50052 ENSMUSG00000046709.18 ENSMUSG00000046709 ENSMUST00000136595 Mapk10 protein_coding Interval_17871 chr10 80509421 80510063 + 0 NA TTS (ENSMUSG00000104429.1) TEC-TTS (ENSMUSG00000104429.1) 973 ENSMUSG00000104429.1 ENSMUSG00000104429 ENSMUST00000194078 2610034O05Rik TEC Interval_77765 chr18 3351835 3352650 + 0 NA intron (ENSMUSG00000097746.2, intron 1 of 1) processed_transcript-intron (ENSMUSG00000097746.2, intron 1 of 1) -14653 ENSMUSG00000063889.16 ENSMUSG00000063889 ENSMUST00000132334 Crem protein_coding Interval_79011 chr18 23936764 23937026 + 0 NA Intergenic Intergenic -7002 ENSMUSG00000117504.1 ENSMUSG00000117504 ENSMUST00000235052 Gm46611 processed_pseudogene Interval_53186 chr14 54996584 54997355 + 0 NA Intergenic Intergenic -3278 ENSMUSG00000053093.16 ENSMUSG00000053093 ENSMUST00000226424 Myh7 protein_coding Interval_3597 chr1 59862741 59863801 + 0 NA intron (ENSMUSG00000067336.6, intron 10 of 12) protein_coding-intron (ENSMUSG00000067336.6, intron 10 of 12) 12606 ENSMUSG00000067336.6 ENSMUSG00000067336 ENSMUST00000186246 Bmpr2 protein_coding Interval_56638 chr14 121052335 121053699 + 0 NA intron (ENSMUSG00000025555.14, intron 1 of 26) protein_coding-intron (ENSMUSG00000025555.14, intron 1 of 26) -49062 ENSMUSG00000025555.14 ENSMUSG00000025555 ENSMUST00000137971 Farp1 protein_coding Interval_40304 chr12 103367773 103368574 + 0 NA promoter-TSS (ENSMUSG00000110677.1) unitary_pseudogene-promoter-TSS (ENSMUSG00000110677.1) -599 ENSMUSG00000110677.1 ENSMUSG00000110677 ENSMUST00000213009 Gm45777 unitary_pseudogene Interval_116935 chr4 118306143 118306709 + 0 NA Intergenic Intergenic -15152 ENSMUSG00000033295.14 ENSMUSG00000033295 ENSMUST00000222620 Ptprf protein_coding Interval_486 chr1 6287715 6288069 + 0 NA Intergenic Intergenic 59890 ENSMUSG00000025907.14 ENSMUSG00000025907 ENSMUST00000159656 Rb1cc1 protein_coding Interval_162292 chr8 126829992 126830905 + 0 NA intron (ENSMUSG00000110697.1, intron 4 of 8) lincRNA-intron (ENSMUSG00000110697.1, intron 4 of 8) -8785 ENSMUSG00000110498.1 ENSMUSG00000110498 ENSMUST00000212914 A630001O12Rik lincRNA Interval_103470 chr3 41947352 41947674 + 0 NA Intergenic Intergenic -28822 ENSMUSG00000102972.1 ENSMUSG00000102972 ENSMUST00000193104 Gm37348 processed_pseudogene Interval_61839 chr15 84566680 84566966 + 0 NA Intergenic Intergenic -9000 ENSMUSG00000055745.4 ENSMUSG00000055745 ENSMUST00000069476 Rtl6 protein_coding Interval_90941 chr2 33624012 33624283 + 0 NA intron (ENSMUSG00000038765.14, intron 2 of 7) protein_coding-intron (ENSMUSG00000038765.14, intron 2 of 7) 9749 ENSMUSG00000104403.1 ENSMUSG00000104403 ENSMUST00000193312 Gm38011 TEC Interval_86754 chr19 43630560 43631385 + 0 NA Intergenic Intergenic 8526 ENSMUSG00000092871.1 ENSMUSG00000092871 ENSMUST00000175130 Gm22646 miRNA Interval_104674 chr3 69316215 69317739 + 0 NA exon (ENSMUSG00000027784.10, exon 1 of 4) protein_coding-exon (ENSMUSG00000027784.10, exon 1 of 4) 3608 ENSMUSG00000091315.1 ENSMUSG00000091315 ENSMUST00000164501 Gm17214 processed_pseudogene Interval_65322 chr16 21510771 21510970 + 0 NA intron (ENSMUSG00000033653.18, intron 1 of 23) protein_coding-intron (ENSMUSG00000033653.18, intron 24 of 43) -22242 ENSMUSG00000033653.18 ENSMUSG00000033653 ENSMUST00000127903 Vps8 protein_coding Interval_139487 chr6 100495236 100495444 + 0 NA promoter-TSS (ENSMUSG00000087929.1) snoRNA-promoter-TSS (ENSMUSG00000087929.1) -526 ENSMUSG00000087929.1 ENSMUSG00000087929 ENSMUST00000157304 Gm23234 snoRNA Interval_133152 chr5 150216112 150216401 + 0 NA intron (ENSMUSG00000056602.12, intron 1 of 3) protein_coding-intron (ENSMUSG00000056602.12, intron 2 of 4) -27607 ENSMUSG00000107082.1 ENSMUSG00000107082 ENSMUST00000201709 Gm36378 processed_pseudogene Interval_29070 chr11 80160930 80162275 + 0 NA intron (ENSMUSG00000020709.15, intron 4 of 4) protein_coding-intron (ENSMUSG00000020709.15, intron 4 of 10) 7486 ENSMUSG00000020709.15 ENSMUSG00000020709 ENSMUST00000134118 Adap2 protein_coding Interval_93236 chr2 71357992 71358735 + 0 NA intron (ENSMUSG00000027010.16, intron 2 of 16) protein_coding-intron (ENSMUSG00000027010.16, intron 2 of 17) 9170 ENSMUSG00000027010.16 ENSMUSG00000027010 ENSMUST00000146653 Slc25a12 protein_coding Interval_25709 chr11 50939623 50940702 + 0 NA TTS (ENSMUSG00000072983.4) protein_coding-TTS (ENSMUSG00000072983.4) 3579 ENSMUSG00000072983.4 ENSMUSG00000072983 ENSMUST00000156329 4933414I15Rik protein_coding Interval_74232 chr17 47599513 47600334 + 0 NA TTS (ENSMUSG00000034165.16) protein_coding-TTS (ENSMUSG00000034165.16) 3599 ENSMUSG00000034165.16 ENSMUSG00000034165 ENSMUST00000183206 Ccnd3 protein_coding Interval_34445 chr12 4208602 4209229 + 0 NA intron (ENSMUSG00000020654.15, intron 16 of 20) protein_coding-intron (ENSMUSG00000020654.15, intron 15 of 20) 7591 ENSMUSG00000020652.17 ENSMUSG00000020652 ENSMUST00000126017 Cenpo protein_coding Interval_12244 chr1 191075295 191075963 + 0 NA TTS (ENSMUSG00000062510.12) protein_coding-TTS (ENSMUSG00000062510.12) 3051 ENSMUSG00000103576.1 ENSMUSG00000103576 ENSMUST00000192879 Gm38188 antisense Interval_41055 chr12 110840708 110841069 + 0 NA promoter-TSS (ENSMUSG00000056458.16) protein_coding-promoter-TSS (ENSMUSG00000056458.16) 39 ENSMUSG00000056458.16 ENSMUSG00000056458 ENSMUST00000177224 Mok protein_coding Interval_71348 chr17 22497305 22497586 + 0 NA Intergenic Intergenic 2823 ENSMUSG00000117259.1 ENSMUSG00000117259 ENSMUST00000232727 Gm19012 processed_pseudogene Interval_27120 chr11 63115860 63116177 + 0 NA Intergenic Intergenic -16785 ENSMUSG00000018217.12 ENSMUSG00000018217 ENSMUST00000108700 Pmp22 protein_coding Interval_60304 chr15 72689826 72690399 + 0 NA intron (ENSMUSG00000047921.17, intron 19 of 21) protein_coding-intron (ENSMUSG00000047921.17, intron 19 of 21) 31275 ENSMUSG00000088364.2 ENSMUSG00000088364 ENSMUST00000157739 Gm28020 snRNA Interval_19159 chr10 95220160 95221039 + 0 NA intron (ENSMUSG00000045867.10, intron 2 of 2) protein_coding-intron (ENSMUSG00000045867.10, intron 2 of 2) 60238 ENSMUSG00000112682.1 ENSMUSG00000112682 ENSMUST00000220149 Gm48874 TEC Interval_101228 chr2 179644705 179644922 + 0 NA intron (ENSMUSG00000000305.12, intron 2 of 2) protein_coding-intron (ENSMUSG00000000305.12, intron 2 of 15) -31246 ENSMUSG00000083410.1 ENSMUSG00000083410 ENSMUST00000120800 Gm14300 processed_pseudogene Interval_18424 chr10 85685039 85685342 + 0 NA Intergenic Intergenic -22490 ENSMUSG00000111435.1 ENSMUSG00000111435 ENSMUST00000217622 Gm47358 lincRNA Interval_62820 chr15 97215226 97215425 + 0 NA Intergenic Intergenic 31797 ENSMUSG00000048218.6 ENSMUSG00000048218 ENSMUST00000053106 Amigo2 protein_coding Interval_147257 chr7 65187091 65187550 + 0 NA Intergenic Intergenic -13129 ENSMUSG00000108445.1 ENSMUSG00000108445 ENSMUST00000205315 Gm17918 processed_pseudogene Interval_152626 chr7 135487607 135488417 + 0 NA intron (ENSMUSG00000109598.1, intron 2 of 3) lincRNA-intron (ENSMUSG00000109598.1, intron 2 of 3) 1983 ENSMUSG00000109598.1 ENSMUSG00000109598 ENSMUST00000209224 Gm36356 lincRNA Interval_69112 chr16 90740059 90740721 + 0 NA intron (ENSMUSG00000039956.9, intron 1 of 2) protein_coding-intron (ENSMUSG00000039956.9, intron 1 of 2) 2066 ENSMUSG00000039956.9 ENSMUSG00000039956 ENSMUST00000038197 Mrap protein_coding Interval_105695 chr3 88614857 88616175 + 0 NA promoter-TSS (ENSMUSG00000028059.16) protein_coding-promoter-TSS (ENSMUSG00000028059.16) -627 ENSMUSG00000028059.16 ENSMUSG00000028059 ENSMUST00000176272 Arhgef2 protein_coding Interval_167988 chr9 75287342 75288087 + 0 NA promoter-TSS (ENSMUSG00000033590.8) protein_coding-promoter-TSS (ENSMUSG00000033590.8) 27157 ENSMUSG00000111348.1 ENSMUSG00000111348 ENSMUST00000216737 Gm19531 antisense Interval_50543 chr14 14863207 14864519 + 0 NA intron (ENSMUSG00000042567.20, intron 20 of 35) protein_coding-intron (ENSMUSG00000042567.20, intron 2 of 12) 60448 ENSMUSG00000042567.20 ENSMUSG00000042567 ENSMUST00000136826 Nek10 protein_coding Interval_57186 chr15 7222867 7223092 + 0 NA promoter-TSS (ENSMUSG00000042961.13) protein_coding-promoter-TSS (ENSMUSG00000042961.13) 31789 ENSMUSG00000042961.13 ENSMUSG00000042961 ENSMUST00000159726 Egflam protein_coding Interval_126258 chr5 84705419 84706300 + 0 NA Intergenic Intergenic 87153 ENSMUSG00000105658.1 ENSMUSG00000105658 ENSMUST00000200676 Gm43531 processed_pseudogene Interval_149641 chr7 100285156 100285940 + 0 NA promoter-TSS (ENSMUSG00000051048.17) protein_coding-promoter-TSS (ENSMUSG00000051048.17) -16033 ENSMUSG00000051048.17 ENSMUSG00000051048 ENSMUST00000208565 P4ha3 protein_coding Interval_151358 chr7 121706233 121707773 + 0 NA promoter-TSS (ENSMUSG00000053081.3) antisense-promoter-TSS (ENSMUSG00000053081.3) -72 ENSMUSG00000053081.3 ENSMUSG00000053081 ENSMUST00000065310 1700069B07Rik antisense Interval_83061 chr18 80959761 80961073 + 0 NA Intergenic Intergenic 26119 ENSMUSG00000024565.10 ENSMUSG00000024565 ENSMUST00000235746 Sall3 protein_coding Interval_125884 chr5 75380490 75381078 + 0 NA Intergenic Intergenic -8639 ENSMUSG00000088210.1 ENSMUSG00000088210 ENSMUST00000157585 Gm22084 snRNA Interval_156889 chr8 61499158 61499482 + 0 NA intron (ENSMUSG00000031641.14, intron 2 of 2) protein_coding-intron (ENSMUSG00000031641.14, intron 4 of 4) 11565 ENSMUSG00000031641.14 ENSMUSG00000031641 ENSMUST00000150932 Cbr4 protein_coding Interval_110734 chr4 7703010 7703354 + 0 NA Intergenic Intergenic -56488 ENSMUSG00000085630.1 ENSMUSG00000085630 ENSMUST00000127180 Gm11795 lincRNA Interval_82675 chr18 75842726 75844762 + 0 NA intron (ENSMUSG00000044646.15, intron 1 of 5) protein_coding-intron (ENSMUSG00000044646.15, intron 1 of 4) 23529 ENSMUSG00000044646.15 ENSMUSG00000044646 ENSMUST00000167921 Zbtb7c protein_coding Interval_89597 chr2 23124617 23125471 + 0 NA intron (ENSMUSG00000026779.6, intron 9 of 11) protein_coding-intron (ENSMUSG00000026779.6, intron 9 of 11) 30853 ENSMUSG00000026779.6 ENSMUSG00000026779 ENSMUST00000136207 Mastl protein_coding Interval_107163 chr3 104089346 104089724 + 0 NA exon (ENSMUSG00000052539.15, exon 4 of 22) protein_coding-exon (ENSMUSG00000052539.15, exon 4 of 22) -2846 ENSMUSG00000088016.1 ENSMUSG00000088016 ENSMUST00000157391 Gm23830 snRNA Interval_32957 chr11 113363538 113364018 + 0 NA intron (ENSMUSG00000041654.15, intron 6 of 9) protein_coding-intron (ENSMUSG00000041654.15, intron 7 of 10) -104199 ENSMUSG00000078251.2 ENSMUSG00000078251 ENSMUST00000105048 Gm16487 pseudogene Interval_171295 chr9 116150793 116151052 + 0 NA intron (ENSMUSG00000032440.13, intron 1 of 6) protein_coding-intron (ENSMUSG00000032440.13, intron 1 of 6) 24343 ENSMUSG00000032440.13 ENSMUSG00000032440 ENSMUST00000035014 Tgfbr2 protein_coding Interval_33750 chr11 118261336 118261533 + 0 NA TTS (ENSMUSG00000033909.17) protein_coding-TTS (ENSMUSG00000033909.17) 28638 ENSMUSG00000033909.17 ENSMUSG00000033909 ENSMUST00000151433 Usp36 protein_coding Interval_103809 chr3 53135506 53136129 + 0 NA intron (ENSMUSG00000048332.13, intron 2 of 3) protein_coding-intron (ENSMUSG00000048332.13, intron 2 of 3) -22406 ENSMUSG00000104968.1 ENSMUSG00000104968 ENSMUST00000196732 Gm43803 antisense Interval_60338 chr15 73005826 73006049 + 0 NA intron (ENSMUSG00000047921.17, intron 7 of 16) protein_coding-intron (ENSMUSG00000047921.17, intron 7 of 21) 55108 ENSMUSG00000047921.17 ENSMUSG00000047921 ENSMUST00000228960 Trappc9 protein_coding Interval_110825 chr4 8757765 8758390 + 0 NA intron (ENSMUSG00000041235.12, intron 1 of 4) protein_coding-intron (ENSMUSG00000041235.12, intron 2 of 37) -84495 ENSMUSG00000082122.1 ENSMUSG00000082122 ENSMUST00000120923 Gm11809 processed_pseudogene Interval_37025 chr12 56540759 56541394 + 0 NA intron (ENSMUSG00000098172.7, intron 1 of 2) antisense-intron (ENSMUSG00000098172.7, intron 1 of 2) 3711 ENSMUSG00000098172.7 ENSMUSG00000098172 ENSMUST00000182105 Gm26973 antisense Interval_33228 chr11 115354317 115354751 + 0 NA TTS (ENSMUSG00000034586.14) protein_coding-TTS (ENSMUSG00000034586.14) 839 ENSMUSG00000034586.14 ENSMUSG00000034586 ENSMUST00000152977 Hid1 protein_coding Interval_156072 chr8 43475695 43475964 + 0 NA Intergenic Intergenic 52277 ENSMUSG00000063900.5 ENSMUSG00000063900 ENSMUST00000080135 Adam26b protein_coding Interval_50919 chr14 20763745 20764060 + 0 NA intron (ENSMUSG00000021820.18, intron 10 of 21) protein_coding-intron (ENSMUSG00000021820.18, intron 10 of 20) 30064 ENSMUSG00000021820.18 ENSMUSG00000021820 ENSMUST00000225635 Camk2g protein_coding Interval_105397 chr3 85978461 85980538 + 0 NA intron (ENSMUSG00000028082.14, intron 1 of 20) protein_coding-intron (ENSMUSG00000028082.14, intron 1 of 20) -16589 ENSMUSG00000098444.1 ENSMUSG00000098444 ENSMUST00000185022 Gm27811 snRNA Interval_105836 chr3 89622587 89622960 + 0 NA intron (ENSMUSG00000000794.9, intron 3 of 7) protein_coding-intron (ENSMUSG00000000794.9, intron 3 of 7) -39745 ENSMUSG00000000794.9 ENSMUSG00000000794 ENSMUST00000124584 Kcnn3 protein_coding Interval_101437 chr2 181384225 181385340 + 0 NA exon (ENSMUSG00000085028.2, exon 1 of 3) transcribed_unitary_pseudogene-exon (ENSMUSG00000085028.2, exon 1 of 3) 371 ENSMUSG00000085028.2 ENSMUSG00000085028 ENSMUST00000176590 Slc2a4rg-ps transcribed_unitary_pseudogene Interval_88568 chr2 6219628 6220785 + 0 NA intron (ENSMUSG00000087125.1, intron 1 of 6) antisense-intron (ENSMUSG00000087125.1, intron 1 of 6) -23998 ENSMUSG00000039063.5 ENSMUSG00000039063 ENSMUST00000114941 Echdc3 protein_coding Interval_69723 chr16 95819703 95820508 + 0 NA intron (ENSMUSG00000117232.1, intron 2 of 4) lincRNA-intron (ENSMUSG00000117232.1, intron 2 of 4) -11788 ENSMUSG00000085329.1 ENSMUSG00000085329 ENSMUST00000156615 2810404F17Rik lincRNA Interval_3314 chr1 56749917 56750146 + 0 NA Intergenic Intergenic -112596 ENSMUSG00000045336.5 ENSMUSG00000045336 ENSMUST00000062085 Hsfy2 protein_coding Interval_38498 chr12 79661095 79662107 + 0 NA intron (ENSMUSG00000059060.15, intron 8 of 10) protein_coding-intron (ENSMUSG00000059060.15, intron 8 of 10) 263893 ENSMUSG00000112765.1 ENSMUSG00000112765 ENSMUST00000219857 9430078K24Rik lincRNA Interval_170079 chr9 104270211 104270886 + 0 NA Intergenic Intergenic 8443 ENSMUSG00000104040.1 ENSMUSG00000104040 ENSMUST00000192580 Gm37563 TEC Interval_45132 chr13 52565248 52565846 + 0 NA Intergenic Intergenic -17956 ENSMUSG00000021457.14 ENSMUSG00000021457 ENSMUST00000140339 Syk protein_coding Interval_149923 chr7 102678760 102679182 + 0 NA exon (ENSMUSG00000073968.4, exon 1 of 1) protein_coding-exon (ENSMUSG00000073968.4, exon 1 of 1) 2435 ENSMUSG00000110352.1 ENSMUSG00000110352 ENSMUST00000209454 Gm45687 unprocessed_pseudogene Interval_142022 chr6 136586838 136587154 + 0 NA intron (ENSMUSG00000030213.12, intron 8 of 8) protein_coding-intron (ENSMUSG00000030213.12, intron 8 of 14) -33636 ENSMUSG00000107760.1 ENSMUSG00000107760 ENSMUST00000204462 Gm44401 TEC Interval_149610 chr7 100026649 100026946 + 0 NA intron (ENSMUSG00000030732.13, intron 3 of 6) protein_coding-intron (ENSMUSG00000030732.13, intron 6 of 10) 20625 ENSMUSG00000030732.13 ENSMUSG00000030732 ENSMUST00000144808 Chrdl2 protein_coding Interval_13249 chr10 13569843 13570297 + 0 NA Intergenic Intergenic -16928 ENSMUSG00000019809.16 ENSMUSG00000019809 ENSMUST00000145337 Pex3 protein_coding Interval_83302 chr18 83958250 83958739 + 0 NA Intergenic Intergenic -29501 ENSMUSG00000117894.1 ENSMUSG00000117894 ENSMUST00000238017 Gm50421 processed_pseudogene Interval_130403 chr5 127338739 127339896 + 0 NA intron (ENSMUSG00000034324.16, intron 1 of 8) protein_coding-intron (ENSMUSG00000034324.16, intron 1 of 8) 30300 ENSMUSG00000104971.1 ENSMUSG00000104971 ENSMUST00000196548 9430087B13Rik TEC Interval_117553 chr4 124644827 124645620 + 0 NA intron (ENSMUSG00000098760.1, intron 1 of 1) antisense-intron (ENSMUSG00000098760.1, intron 1 of 1) -11584 ENSMUSG00000090125.3 ENSMUSG00000090125 ENSMUST00000053491 Pou3f1 protein_coding Interval_137426 chr6 72188996 72190805 + 0 NA Intergenic Intergenic 27051 ENSMUSG00000108371.1 ENSMUSG00000108371 ENSMUST00000205674 Gm38832 lincRNA Interval_92750 chr2 65064042 65064373 + 0 NA Intergenic Intergenic -88438 ENSMUSG00000026888.14 ENSMUSG00000026888 ENSMUST00000146807 Grb14 protein_coding Interval_97723 chr2 143402155 143403539 + 0 NA Intergenic Intergenic 53335 ENSMUSG00000083787.1 ENSMUSG00000083787 ENSMUST00000119735 Gm11644 processed_pseudogene Interval_160885 chr8 114564626 114564853 + 0 NA intron (ENSMUSG00000004637.15, intron 5 of 8) protein_coding-intron (ENSMUSG00000004637.15, intron 5 of 8) 30161 ENSMUSG00000090217.1 ENSMUSG00000090217 ENSMUST00000159472 Gm16116 antisense Interval_155407 chr8 33355350 33355752 + 0 NA intron (ENSMUSG00000031583.13, intron 1 of 33) protein_coding-intron (ENSMUSG00000031583.13, intron 1 of 33) -25001 ENSMUSG00000031583.13 ENSMUSG00000031583 ENSMUST00000209293 Wrn protein_coding Interval_141123 chr6 125129708 125132480 + 0 NA promoter-TSS (ENSMUSG00000038279.10) protein_coding-promoter-TSS (ENSMUSG00000038279.10) -939 ENSMUSG00000038279.10 ENSMUSG00000038279 ENSMUST00000204185 Nop2 protein_coding Interval_46318 chr13 63914965 63917725 + 0 NA Intergenic Intergenic 30176 ENSMUSG00000113340.1 ENSMUSG00000113340 ENSMUST00000220900 Gm7695 processed_pseudogene Interval_5809 chr1 92079050 92079476 + 0 NA intron (ENSMUSG00000026313.16, intron 3 of 4) protein_coding-intron (ENSMUSG00000026313.16, intron 1 of 25) -57166 ENSMUSG00000102565.1 ENSMUSG00000102565 ENSMUST00000192836 Gm37036 TEC Interval_57352 chr15 9443542 9443852 + 0 NA intron (ENSMUSG00000039676.4, intron 1 of 3) protein_coding-intron (ENSMUSG00000039676.4, intron 1 of 4) 7669 ENSMUSG00000039676.4 ENSMUSG00000039676 ENSMUST00000226688 Capsl protein_coding Interval_98596 chr2 153483034 153483325 + 0 NA intron (ENSMUSG00000061411.12, intron 3 of 7) protein_coding-intron (ENSMUSG00000061411.12, intron 2 of 10) -3453 ENSMUSG00000061411.12 ENSMUSG00000061411 ENSMUST00000156786 Nol4l protein_coding Interval_148140 chr7 79452793 79453013 + 0 NA promoter-TSS (ENSMUSG00000039176.17) protein_coding-promoter-TSS (ENSMUSG00000039176.17) -981 ENSMUSG00000039176.17 ENSMUSG00000039176 ENSMUST00000125562 Polg protein_coding Interval_2989 chr1 51914736 51916402 + 0 NA intron (ENSMUSG00000018417.14, intron 1 of 3) protein_coding-intron (ENSMUSG00000018417.14, intron 1 of 30) 343 ENSMUSG00000018417.14 ENSMUSG00000018417 ENSMUST00000126657 Myo1b protein_coding Interval_117319 chr4 122983363 122983994 + 0 NA Intergenic Intergenic -15661 ENSMUSG00000028654.13 ENSMUSG00000028654 ENSMUST00000147259 Mycl protein_coding Interval_32305 chr11 106787358 106789665 + 0 NA promoter-TSS (ENSMUSG00000018372.13) protein_coding-promoter-TSS (ENSMUSG00000018372.13) -2461 ENSMUSG00000020719.14 ENSMUSG00000020719 ENSMUST00000123339 Ddx5 protein_coding Interval_143495 chr7 10494752 10495841 + 0 NA promoter-TSS (ENSMUSG00000030393.8) protein_coding-promoter-TSS (ENSMUSG00000030393.8) 98 ENSMUSG00000030393.8 ENSMUSG00000030393 ENSMUST00000032551 Zik1 protein_coding Interval_22672 chr11 12739957 12741147 + 0 NA Intergenic Intergenic 47739 ENSMUSG00000088509.1 ENSMUSG00000088509 ENSMUST00000157884 Gm22789 snoRNA Interval_71942 chr17 27130510 27130858 + 0 NA intron (ENSMUSG00000024208.16, intron 1 of 3) protein_coding-intron (ENSMUSG00000024208.16, intron 1 of 3) 2939 ENSMUSG00000024208.16 ENSMUSG00000024208 ENSMUST00000119227 Uqcc2 protein_coding Interval_26336 chr11 56458957 56459214 + 0 NA promoter-TSS (ENSMUSG00000081749.3) processed_pseudogene-promoter-TSS (ENSMUSG00000081749.3) -264 ENSMUSG00000081749.3 ENSMUSG00000081749 ENSMUST00000118330 Gm12241 processed_pseudogene Interval_128542 chr5 113929703 113930487 + 0 NA promoter-TSS (ENSMUSG00000105664.1) lincRNA-promoter-TSS (ENSMUSG00000105664.1) 39 ENSMUSG00000105664.1 ENSMUSG00000105664 ENSMUST00000197573 Gm42797 lincRNA Interval_122836 chr5 25946847 25947385 + 0 NA Intergenic Intergenic -4735 ENSMUSG00000104824.1 ENSMUSG00000104824 ENSMUST00000196214 Gm21663 protein_coding Interval_124348 chr5 44284099 44284767 + 0 NA Intergenic Intergenic -57816 ENSMUSG00000046985.11 ENSMUSG00000046985 ENSMUST00000196151 Tapt1 protein_coding Interval_86688 chr19 42631283 42632523 + 0 NA Intergenic Intergenic -23372 ENSMUSG00000025185.14 ENSMUSG00000025185 ENSMUST00000166128 Loxl4 protein_coding Interval_78848 chr18 20953324 20953652 + 0 NA intron (ENSMUSG00000033107.6, intron 1 of 5) protein_coding-intron (ENSMUSG00000033107.6, intron 1 of 5) -7984 ENSMUSG00000033107.6 ENSMUSG00000033107 ENSMUST00000234316 Rnf125 protein_coding Interval_63875 chr16 4169580 4170050 + 0 NA TTS (ENSMUSG00000103937.1) TEC-TTS (ENSMUSG00000103937.1) 3821 ENSMUSG00000103937.1 ENSMUSG00000103937 ENSMUST00000195629 Gm37186 TEC Interval_123459 chr5 32670030 32670771 + 0 NA intron (ENSMUSG00000014932.15, intron 11 of 11) protein_coding-intron (ENSMUSG00000014932.15, intron 11 of 11) -19335 ENSMUSG00000085234.1 ENSMUSG00000085234 ENSMUST00000155976 Gm15614 antisense Interval_99322 chr2 158985726 158985944 + 0 NA Intergenic Intergenic -84028 ENSMUSG00000104628.1 ENSMUSG00000104628 ENSMUST00000196974 Gm44319 miRNA Interval_10479 chr1 171238431 171239065 + 0 NA TTS (ENSMUSG00000013593.12) protein_coding-TTS (ENSMUSG00000013593.12) -4441 ENSMUSG00000058715.11 ENSMUSG00000058715 ENSMUST00000150997 Fcer1g protein_coding Interval_153548 chr8 3357999 3358235 + 0 NA intron (ENSMUSG00000004568.13, intron 1 of 8) protein_coding-intron (ENSMUSG00000004568.13, intron 1 of 10) 4680 ENSMUSG00000004568.13 ENSMUSG00000004568 ENSMUST00000145360 Arhgef18 protein_coding Interval_104142 chr3 59010971 59011632 + 0 NA intron (ENSMUSG00000056476.13, intron 1 of 43) protein_coding-intron (ENSMUSG00000056476.13, intron 1 of 14) 4814 ENSMUSG00000056476.13 ENSMUSG00000056476 ENSMUST00000197374 Med12l protein_coding Interval_28625 chr11 77365589 77366138 + 0 NA intron (ENSMUSG00000037926.15, intron 1 of 13) protein_coding-intron (ENSMUSG00000037926.15, intron 2 of 14) 17581 ENSMUSG00000037926.15 ENSMUSG00000037926 ENSMUST00000180545 Ssh2 protein_coding Interval_130330 chr5 125803442 125803822 + 0 NA Intergenic Intergenic 45108 ENSMUSG00000091970.3 ENSMUSG00000091970 ENSMUST00000164138 Gm4868 processed_pseudogene Interval_163146 chr9 15740787 15741025 + 0 NA exon (ENSMUSG00000043885.14, exon 11 of 11) protein_coding-exon (ENSMUSG00000043885.14, exon 11 of 11) 14018 ENSMUSG00000043885.14 ENSMUSG00000043885 ENSMUST00000214954 Slc36a4 protein_coding Interval_99227 chr2 158228448 158229830 + 0 NA promoter-TSS (ENSMUSG00000037813.13) protein_coding-promoter-TSS (ENSMUSG00000037813.13) 83 ENSMUSG00000037813.13 ENSMUSG00000037813 ENSMUST00000046944 D630003M21Rik protein_coding Interval_23456 chr11 22732767 22732998 + 0 NA exon (ENSMUSG00000085979.1, exon 1 of 2) lincRNA-exon (ENSMUSG00000085979.1, exon 1 of 2) 104 ENSMUSG00000085979.1 ENSMUSG00000085979 ENSMUST00000143643 Gm12055 lincRNA Interval_88959 chr2 13553288 13554323 + 0 NA Intergenic Intergenic -9142 ENSMUSG00000026723.10 ENSMUSG00000026723 ENSMUST00000144957 Trdmt1 protein_coding Interval_15191 chr10 43267099 43267303 + 0 NA intron (ENSMUSG00000038240.13, intron 1 of 7) protein_coding-intron (ENSMUSG00000038240.13, intron 1 of 7) 45465 ENSMUSG00000038240.13 ENSMUSG00000038240 ENSMUST00000162008 Pdss2 protein_coding Interval_85530 chr19 28130882 28131453 + 0 NA Intergenic Intergenic 15136 ENSMUSG00000117862.1 ENSMUSG00000117862 ENSMUST00000236360 Gm35781 processed_pseudogene Interval_32412 chr11 107402012 107402647 + 0 NA intron (ENSMUSG00000040430.18, intron 1 of 9) protein_coding-intron (ENSMUSG00000040430.18, intron 1 of 9) -8061 ENSMUSG00000085245.1 ENSMUSG00000085245 ENSMUST00000139941 Gm11713 antisense Interval_135176 chr6 37252738 37252945 + 0 NA intron (ENSMUSG00000038665.15, intron 1 of 1) protein_coding-intron (ENSMUSG00000038665.15, intron 2 of 32) 47343 ENSMUSG00000038665.15 ENSMUSG00000038665 ENSMUST00000136457 Dgki protein_coding Interval_82532 chr18 74985976 74986385 + 0 NA Intergenic Intergenic -4633 ENSMUSG00000118384.1 ENSMUSG00000118384 ENSMUST00000237753 9030625G05Rik lincRNA Interval_60620 chr15 75740554 75741426 + 0 NA Intergenic Intergenic 7238 ENSMUSG00000047591.5 ENSMUSG00000047591 ENSMUST00000062002 Mafa protein_coding Interval_109430 chr3 142298222 142298995 + 0 NA intron (ENSMUSG00000028273.15, intron 6 of 14) protein_coding-intron (ENSMUSG00000028273.15, intron 7 of 12) 5371 ENSMUSG00000028273.15 ENSMUSG00000028273 ENSMUST00000058626 Pdlim5 protein_coding Interval_93963 chr2 80207150 80207373 + 0 NA Intergenic Intergenic 75331 ENSMUSG00000083519.1 ENSMUSG00000083519 ENSMUST00000121276 Gm13674 processed_pseudogene Interval_90434 chr2 30427899 30428328 + 0 NA promoter-TSS (ENSMUSG00000039515.11) protein_coding-promoter-TSS (ENSMUSG00000039515.11) 11811 ENSMUSG00000039515.11 ENSMUSG00000039515 ENSMUST00000135105 Ptpa protein_coding Interval_133330 chr6 3343611 3344613 + 0 NA TTS (ENSMUSG00000106734.3) processed_transcript-TTS (ENSMUSG00000106734.3) 1946 ENSMUSG00000106734.3 ENSMUSG00000106734 ENSMUST00000202514 Gm20559 processed_transcript Interval_38307 chr12 77019265 77020453 + 0 NA intron (ENSMUSG00000112857.1, intron 2 of 3) lincRNA-intron (ENSMUSG00000112857.1, intron 2 of 3) 22342 ENSMUSG00000112030.1 ENSMUSG00000112030 ENSMUST00000219319 Gm35189 lincRNA Interval_160454 chr8 109607898 109609145 + 0 NA promoter-TSS (ENSMUSG00000031730.18) protein_coding-promoter-TSS (ENSMUSG00000031730.18) -155 ENSMUSG00000031730.18 ENSMUSG00000031730 ENSMUST00000128350 Dhodh protein_coding Interval_92677 chr2 62424906 62425302 + 0 NA intron (ENSMUSG00000087518.1, intron 1 of 4) antisense-intron (ENSMUSG00000087518.1, intron 1 of 4) 16038 ENSMUSG00000087681.1 ENSMUSG00000087681 ENSMUST00000133596 Gm13565 lincRNA Interval_84924 chr19 18816767 18817880 + 0 NA intron (ENSMUSG00000024727.9, intron 17 of 18) protein_coding-intron (ENSMUSG00000024727.9, intron 17 of 38) -40362 ENSMUSG00000088601.1 ENSMUSG00000088601 ENSMUST00000157976 Gm24190 misc_RNA Interval_137500 chr6 72769925 72770605 + 0 NA intron (ENSMUSG00000055799.13, intron 2 of 5) protein_coding-intron (ENSMUSG00000055799.13, intron 3 of 11) -18351 ENSMUSG00000104501.1 ENSMUSG00000104501 ENSMUST00000193564 Gm37736 TEC Interval_122392 chr5 21914897 21915250 + 0 NA exon (ENSMUSG00000042453.14, exon 53 of 64) protein_coding-exon (ENSMUSG00000042453.14, exon 53 of 64) 4142 ENSMUSG00000073152.4 ENSMUSG00000073152 ENSMUST00000084713 Gm10475 antisense Interval_156985 chr8 63849663 63850525 + 0 NA Intergenic Intergenic -28102 ENSMUSG00000077153.1 ENSMUSG00000077153 ENSMUST00000103965 Gm24580 snoRNA Interval_161344 chr8 119869560 119870691 + 0 NA TTS (ENSMUSG00000031828.9) protein_coding-TTS (ENSMUSG00000031828.9) 7856 ENSMUSG00000031828.9 ENSMUSG00000031828 ENSMUST00000034287 Klhl36 protein_coding Interval_145721 chr7 37771682 37773023 + 0 NA TTS (ENSMUSG00000043456.17) protein_coding-TTS (ENSMUSG00000043456.17) 51995 ENSMUSG00000064591.1 ENSMUSG00000064591 ENSMUST00000082657 Gm22302 snRNA Interval_130022 chr5 123733463 123734060 + 0 NA promoter-TSS (ENSMUSG00000029422.15) protein_coding-promoter-TSS (ENSMUSG00000029422.15) -12987 ENSMUSG00000029427.11 ENSMUSG00000029427 ENSMUST00000200503 Zcchc8 protein_coding Interval_74037 chr17 46202171 46203570 + 0 NA promoter-TSS (ENSMUSG00000023953.9) protein_coding-promoter-TSS (ENSMUSG00000023953.9) 53 ENSMUSG00000067150.6 ENSMUSG00000067150 ENSMUST00000232971 Xpo5 protein_coding Interval_142624 chr6 144354890 144355732 + 0 NA intron (ENSMUSG00000041540.16, intron 4 of 6) protein_coding-intron (ENSMUSG00000041540.16, intron 4 of 13) -125914 ENSMUSG00000087157.1 ENSMUSG00000087157 ENSMUST00000156443 Sox5os2 antisense Interval_95316 chr2 106435819 106436537 + 0 NA Intergenic Intergenic 86925 ENSMUSG00000087226.1 ENSMUSG00000087226 ENSMUST00000130634 Gm14015 lincRNA Interval_174223 chrX 140342179 140343038 + 0 NA intron (ENSMUSG00000042425.18, intron 1 of 14) protein_coding-intron (ENSMUSG00000042425.18, intron 1 of 14) 345 ENSMUSG00000042425.18 ENSMUSG00000042425 ENSMUST00000044702 Frmpd3 protein_coding Interval_120326 chr4 147892469 147893202 + 0 NA promoter-TSS (ENSMUSG00000083340.1) processed_pseudogene-promoter-TSS (ENSMUSG00000083340.1) -838 ENSMUSG00000083340.1 ENSMUSG00000083340 ENSMUST00000118348 Gm13156 processed_pseudogene Interval_146356 chr7 45487926 45489202 + 0 NA intron (ENSMUSG00000011382.8, intron 1 of 6) protein_coding-intron (ENSMUSG00000011382.8, intron 1 of 6) -1162 ENSMUSG00000011382.8 ENSMUSG00000011382 ENSMUST00000210440 Dhdh protein_coding Interval_38092 chr12 75610649 75611198 + 0 NA Intergenic Intergenic -14678 ENSMUSG00000021051.10 ENSMUSG00000021051 ENSMUST00000218930 Ppp2r5e protein_coding Interval_15968 chr10 59744059 59745211 + 0 NA exon (ENSMUSG00000020111.15, exon 4 of 4) protein_coding-exon (ENSMUSG00000020111.15, exon 4 of 4) 35845 ENSMUSG00000090350.1 ENSMUSG00000090350 ENSMUST00000164702 Gm17148 processed_pseudogene Interval_90913 chr2 33444479 33445381 + 0 NA Intergenic Intergenic -1872 ENSMUSG00000085742.1 ENSMUSG00000085742 ENSMUST00000132913 Gm13536 antisense Interval_9216 chr1 155116624 155116847 + 0 NA Intergenic Intergenic -17099 ENSMUSG00000056708.5 ENSMUSG00000056708 ENSMUST00000055322 Ier5 protein_coding Interval_166234 chr9 57655868 57656586 + 0 NA Intergenic Intergenic -22160 ENSMUSG00000032312.7 ENSMUSG00000032312 ENSMUST00000213943 Csk protein_coding Interval_74031 chr17 46170410 46170962 + 0 NA TTS (ENSMUSG00000023953.9) protein_coding-TTS (ENSMUSG00000023953.9) 9620 ENSMUSG00000023952.13 ENSMUSG00000023952 ENSMUST00000166663 Gtpbp2 protein_coding Interval_30860 chr11 96928614 96929746 + 0 NA promoter-TSS (ENSMUSG00000047040.9) protein_coding-promoter-TSS (ENSMUSG00000047040.9) 1076 ENSMUSG00000047040.9 ENSMUSG00000047040 ENSMUST00000107633 Prr15l protein_coding Interval_75161 chr17 64199343 64200511 + 0 NA Intergenic Intergenic 121688 ENSMUSG00000080455.1 ENSMUSG00000080455 ENSMUST00000116805 Gm24194 miRNA Interval_90454 chr2 30553704 30554611 + 0 NA Intergenic Intergenic 19428 ENSMUSG00000085275.1 ENSMUSG00000085275 ENSMUST00000145413 Gm14487 lincRNA Interval_90114 chr2 28213240 28213468 + 0 NA intron (ENSMUSG00000026833.18, intron 3 of 5) protein_coding-intron (ENSMUSG00000026833.18, intron 3 of 5) 20362 ENSMUSG00000026833.18 ENSMUSG00000026833 ENSMUST00000028177 Olfm1 protein_coding Interval_120653 chr4 149921762 149922885 + 0 NA exon (ENSMUSG00000039911.13, exon 1 of 2) protein_coding-exon (ENSMUSG00000039911.13, exon 1 of 2) 148 ENSMUSG00000039911.13 ENSMUSG00000039911 ENSMUST00000135896 Spsb1 protein_coding Interval_148982 chr7 90722644 90722966 + 0 NA intron (ENSMUSG00000052572.19, intron 3 of 27) protein_coding-intron (ENSMUSG00000052572.19, intron 3 of 27) 89356 ENSMUSG00000109074.1 ENSMUSG00000109074 ENSMUST00000209013 Gm45162 processed_pseudogene Interval_38529 chr12 79898403 79898970 + 0 NA Intergenic Intergenic 26808 ENSMUSG00000112765.1 ENSMUSG00000112765 ENSMUST00000219857 9430078K24Rik lincRNA Interval_55653 chr14 98181903 98182192 + 0 NA Intergenic Intergenic -12282 ENSMUSG00000055639.16 ENSMUSG00000055639 ENSMUST00000156684 Dach1 protein_coding Interval_48523 chr13 99760769 99761104 + 0 NA Intergenic Intergenic -68407 ENSMUSG00000077673.1 ENSMUSG00000077673 ENSMUST00000104485 Gm24471 snoRNA Interval_164210 chr9 32569247 32569892 + 0 NA Intergenic Intergenic -26708 ENSMUSG00000016087.13 ENSMUSG00000016087 ENSMUST00000183767 Fli1 protein_coding Interval_159649 chr8 96008308 96008507 + 0 NA Intergenic Intergenic 86878 ENSMUSG00000110506.1 ENSMUSG00000110506 ENSMUST00000212919 Gm8637 processed_pseudogene Interval_34181 chr11 121138492 121139314 + 0 NA Intergenic Intergenic -7254 ENSMUSG00000039329.8 ENSMUSG00000039329 ENSMUST00000155694 Tex19.1 protein_coding Interval_16701 chr10 67099953 67101103 + 0 NA intron (ENSMUSG00000037876.17, intron 1 of 9) protein_coding-intron (ENSMUSG00000037876.17, intron 1 of 1) -63206 ENSMUSG00000019873.8 ENSMUSG00000019873 ENSMUST00000219431 Reep3 protein_coding Interval_81728 chr18 63961848 63962482 + 0 NA intron (ENSMUSG00000040560.10, intron 25 of 26) protein_coding-intron (ENSMUSG00000040560.10, intron 26 of 27) -53009 ENSMUSG00000084642.1 ENSMUSG00000084642 ENSMUST00000122693 Gm24384 snRNA Interval_44075 chr13 40732766 40734564 + 0 NA exon (ENSMUSG00000097752.2, exon 2 of 3) antisense-exon (ENSMUSG00000097752.2, exon 2 of 3) -3903 ENSMUSG00000114597.1 ENSMUSG00000114597 ENSMUST00000224614 Gm47067 antisense Interval_164147 chr9 31982240 31983034 + 0 NA intron (ENSMUSG00000111771.1, intron 2 of 3) lincRNA-intron (ENSMUSG00000111771.1, intron 2 of 3) 22823 ENSMUSG00000111771.1 ENSMUSG00000111771 ENSMUST00000216368 Gm47465 lincRNA Interval_20777 chr10 120903822 120904162 + 0 NA Intergenic Intergenic 4835 ENSMUSG00000086522.1 ENSMUSG00000086522 ENSMUST00000145987 Gm4473 bidirectional_promoter_lncRNA Interval_140844 chr6 122299770 122300021 + 0 NA Intergenic Intergenic 4231 ENSMUSG00000108090.1 ENSMUSG00000108090 ENSMUST00000204884 Gm6637 processed_pseudogene Interval_25262 chr11 45954947 45955644 + 0 NA promoter-TSS (ENSMUSG00000011254.16) protein_coding-promoter-TSS (ENSMUSG00000011254.16) -138 ENSMUSG00000011254.16 ENSMUSG00000011254 ENSMUST00000131182 Thg1l protein_coding Interval_32123 chr11 105353370 105353591 + 0 NA Intergenic Intergenic -9772 ENSMUSG00000086487.1 ENSMUSG00000086487 ENSMUST00000153672 Gm11638 processed_transcript Interval_62365 chr15 91103816 91104024 + 0 NA Intergenic Intergenic 25977 ENSMUSG00000116424.1 ENSMUSG00000116424 ENSMUST00000230136 Gm7167 processed_pseudogene Interval_155416 chr8 33443117 33446546 + 0 NA Intergenic Intergenic -39365 ENSMUSG00000109750.1 ENSMUSG00000109750 ENSMUST00000210634 Hmgb1-rs17 unprocessed_pseudogene Interval_85062 chr19 21933911 21934685 + 0 NA Intergenic Intergenic -3082 ENSMUSG00000045104.9 ENSMUSG00000045104 ENSMUST00000060477 Ldhb-ps processed_pseudogene Interval_111726 chr4 26816183 26816563 + 0 NA Intergenic Intergenic -110924 ENSMUSG00000086257.1 ENSMUSG00000086257 ENSMUST00000154459 4930548K13Rik lincRNA Interval_74903 chr17 57203302 57203502 + 0 NA TTS (ENSMUSG00000024164.15) protein_coding-TTS (ENSMUSG00000024164.15) -9225 ENSMUSG00000005824.7 ENSMUSG00000005824 ENSMUST00000005976 Tnfsf14 protein_coding Interval_10831 chr1 175788442 175789106 + 0 NA intron (ENSMUSG00000026523.14, intron 5 of 15) protein_coding-intron (ENSMUSG00000026523.14, intron 16 of 27) -11740 ENSMUSG00000077794.1 ENSMUSG00000077794 ENSMUST00000104606 Gm25560 snRNA Interval_139395 chr6 99803999 99804993 + 0 NA Intergenic Intergenic 33839 ENSMUSG00000108082.1 ENSMUSG00000108082 ENSMUST00000204852 Gm5314 processed_pseudogene Interval_172946 chrX 57260730 57260998 + 0 NA intron (ENSMUSG00000031133.12, intron 8 of 10) protein_coding-intron (ENSMUSG00000031133.12, intron 9 of 21) 48721 ENSMUSG00000031132.1 ENSMUSG00000031132 ENSMUST00000033466 Cd40lg protein_coding Interval_96100 chr2 119757645 119759466 + 0 NA promoter-TSS (ENSMUSG00000027297.14) protein_coding-promoter-TSS (ENSMUSG00000027297.14) -30 ENSMUSG00000027297.14 ENSMUSG00000027297 ENSMUST00000134295 Ltk protein_coding Interval_13220 chr10 13169772 13170405 + 0 NA intron (ENSMUSG00000019815.7, intron 1 of 4) protein_coding-intron (ENSMUSG00000019815.7, intron 2 of 5) 7935 ENSMUSG00000019815.7 ENSMUSG00000019815 ENSMUST00000219970 Zc2hc1b protein_coding Interval_15088 chr10 42488735 42489144 + 0 NA Intergenic Intergenic 4807 ENSMUSG00000087891.1 ENSMUSG00000087891 ENSMUST00000157266 Gm25277 misc_RNA Interval_34237 chr11 121519059 121520724 + 0 NA promoter-TSS (ENSMUSG00000039238.6) protein_coding-promoter-TSS (ENSMUSG00000039238.6) -558 ENSMUSG00000039238.6 ENSMUSG00000039238 ENSMUST00000092298 Zfp750 protein_coding Interval_22899 chr11 17189067 17189293 + 0 NA intron (ENSMUSG00000078970.5, intron 1 of 12) protein_coding-intron (ENSMUSG00000033953.10, intron 2 of 5) -3664 ENSMUSG00000033953.10 ENSMUSG00000033953 ENSMUST00000154425 Ppp3r1 protein_coding Interval_167976 chr9 75194137 75194320 + 0 NA TTS (ENSMUSG00000034593.16) protein_coding-TTS (ENSMUSG00000034593.16) -37848 ENSMUSG00000033590.8 ENSMUSG00000033590 ENSMUST00000216529 Myo5c protein_coding Interval_123729 chr5 34981840 34982657 + 0 NA intron (ENSMUSG00000029101.16, intron 2 of 3) protein_coding-intron (ENSMUSG00000029101.16, intron 3 of 16) -32072 ENSMUSG00000029101.16 ENSMUSG00000029101 ENSMUST00000150139 Rgs12 protein_coding Interval_100494 chr2 169615981 169616224 + 0 NA Intergenic Intergenic 12216 ENSMUSG00000103662.1 ENSMUSG00000103662 ENSMUST00000191912 Gm34294 TEC Interval_8808 chr1 151316685 151317012 + 0 NA Intergenic Intergenic 27888 ENSMUSG00000100954.4 ENSMUSG00000100954 ENSMUST00000206952 Gm10138 antisense Interval_49696 chr13 114052086 114052806 + 0 NA intron (ENSMUSG00000042348.10, intron 5 of 5) protein_coding-intron (ENSMUSG00000042348.10, intron 4 of 4) 67970 ENSMUSG00000114696.1 ENSMUSG00000114696 ENSMUST00000223997 Gm47479 TEC Interval_131297 chr5 136237659 136237958 + 0 NA intron (ENSMUSG00000005057.13, intron 1 of 1) protein_coding-intron (ENSMUSG00000005057.13, intron 1 of 8) -15146 ENSMUSG00000005057.13 ENSMUSG00000005057 ENSMUST00000196245 Sh2b2 protein_coding Interval_100599 chr2 170364982 170365188 + 0 NA intron (ENSMUSG00000086999.1, intron 2 of 7) protein_coding-intron (ENSMUSG00000013523.13, intron 10 of 12) 8724 ENSMUSG00000086999.1 ENSMUSG00000086999 ENSMUST00000131931 Bcas1os2 antisense Interval_95313 chr2 106355734 106356477 + 0 NA intron (ENSMUSG00000074981.13, intron 8 of 18) transcribed_unitary_pseudogene-intron (ENSMUSG00000074981.13, intron 23 of 35) 90798 ENSMUSG00000081258.1 ENSMUSG00000081258 ENSMUST00000119006 Gm14013 processed_pseudogene Interval_55170 chr14 78898729 78898918 + 0 NA intron (ENSMUSG00000058997.8, intron 2 of 12) protein_coding-intron (ENSMUSG00000058997.8, intron 2 of 44) 48404 ENSMUSG00000115090.1 ENSMUSG00000115090 ENSMUST00000228931 Gm49016 antisense Interval_46858 chr13 72636300 72636806 + 0 NA Intergenic Intergenic 3956 ENSMUSG00000001504.10 ENSMUSG00000001504 ENSMUST00000172353 Irx2 protein_coding Interval_153235 chr7 142675474 142675837 + 0 NA Intergenic Intergenic -5713 ENSMUSG00000115302.1 ENSMUSG00000115302 ENSMUST00000228850 Gm49394 protein_coding Interval_59526 chr15 55027751 55028571 + 0 NA intron (ENSMUSG00000037343.8, intron 23 of 25) protein_coding-intron (ENSMUSG00000037343.8, intron 23 of 25) -5379 ENSMUSG00000037343.8 ENSMUSG00000037343 ENSMUST00000227254 Taf2 protein_coding Interval_163156 chr9 15943689 15944300 + 0 NA intron (ENSMUSG00000074505.6, intron 21 of 25) protein_coding-intron (ENSMUSG00000074505.6, intron 20 of 24) -69438 ENSMUSG00000050901.6 ENSMUSG00000050901 ENSMUST00000057920 Mtnr1b protein_coding Interval_171544 chr9 119114603 119115374 + 0 NA exon (ENSMUSG00000038060.15, exon 6 of 18) protein_coding-exon (ENSMUSG00000038060.15, exon 6 of 18) 12510 ENSMUSG00000038060.15 ENSMUSG00000038060 ENSMUST00000148611 Dlec1 protein_coding Interval_169366 chr9 96728924 96730502 + 0 NA promoter-TSS (ENSMUSG00000040433.16) protein_coding-promoter-TSS (ENSMUSG00000040433.16) 23118 ENSMUSG00000040433.16 ENSMUSG00000040433 ENSMUST00000143403 Zbtb38 protein_coding Interval_165880 chr9 54181445 54182486 + 0 NA exon (ENSMUSG00000032274.9, exon 1 of 1) protein_coding-exon (ENSMUSG00000032274.9, exon 1 of 1) 109 ENSMUSG00000032274.9 ENSMUSG00000032274 ENSMUST00000216974 Cyp19a1 protein_coding Interval_159653 chr8 96102275 96102473 + 0 NA Intergenic Intergenic 180845 ENSMUSG00000110506.1 ENSMUSG00000110506 ENSMUST00000212919 Gm8637 processed_pseudogene Interval_34604 chr12 7541578 7541936 + 0 NA intron (ENSMUSG00000112323.1, intron 4 of 5) lincRNA-intron (ENSMUSG00000112323.1, intron 4 of 5) -123633 ENSMUSG00000112754.1 ENSMUSG00000112754 ENSMUST00000218817 Gm9139 processed_pseudogene Interval_21849 chr11 4733866 4736639 + 0 NA intron (ENSMUSG00000009076.10, intron 5 of 5) protein_coding-intron (ENSMUSG00000009076.10, intron 5 of 5) 11526 ENSMUSG00000009075.2 ENSMUSG00000009075 ENSMUST00000009219 Cabp7 protein_coding Interval_123722 chr5 34884664 34885489 + 0 NA TTS (ENSMUSG00000029104.15) protein_coding-TTS (ENSMUSG00000029104.15) -30012 ENSMUSG00000051246.3 ENSMUSG00000051246 ENSMUST00000202205 Msantd1 protein_coding Interval_64961 chr16 17538606 17539266 + 0 NA Intergenic Intergenic 7754 ENSMUSG00000116898.1 ENSMUSG00000116898 ENSMUST00000231565 Gm49785 bidirectional_promoter_lncRNA Interval_6184 chr1 100235727 100235908 + 0 NA intron (ENSMUSG00000067028.11, intron 5 of 16) protein_coding-intron (ENSMUSG00000067028.11, intron 11 of 23) 17231 ENSMUSG00000087883.1 ENSMUSG00000087883 ENSMUST00000157258 Gm23602 snoRNA Interval_86633 chr19 42170293 42171265 + 0 NA promoter-TSS (ENSMUSG00000018820.13) protein_coding-promoter-TSS (ENSMUSG00000018820.13) 11110 ENSMUSG00000117856.1 ENSMUSG00000117856 ENSMUST00000235531 Gm6937 processed_pseudogene Interval_91143 chr2 35431974 35433969 + 0 NA promoter-TSS (ENSMUSG00000035778.17) protein_coding-promoter-TSS (ENSMUSG00000035778.17) 4340 ENSMUSG00000106856.1 ENSMUSG00000106856 ENSMUST00000202132 Gm43761 TEC Interval_163199 chr9 18008965 18009859 + 0 NA Intergenic Intergenic -12812 ENSMUSG00000111263.1 ENSMUSG00000111263 ENSMUST00000216198 Gm7680 processed_pseudogene Interval_110947 chr4 10733826 10735389 + 0 NA intron (ENSMUSG00000086080.7, intron 1 of 3) lincRNA-intron (ENSMUSG00000086080.7, intron 1 of 3) 63204 ENSMUSG00000086080.7 ENSMUSG00000086080 ENSMUST00000141312 1700123O12Rik lincRNA Interval_29998 chr11 88617278 88617612 + 0 NA intron (ENSMUSG00000069769.13, intron 5 of 5) protein_coding-intron (ENSMUSG00000069769.13, intron 5 of 13) -27298 ENSMUSG00000069769.13 ENSMUSG00000069769 ENSMUST00000126293 Msi2 protein_coding Interval_3540 chr1 59450773 59451127 + 0 NA Intergenic Intergenic -1448 ENSMUSG00000104502.1 ENSMUSG00000104502 ENSMUST00000195013 Gm37737 TEC Interval_161418 chr8 120347540 120348544 + 0 NA intron (ENSMUSG00000031822.20, intron 1 of 2) protein_coding-intron (ENSMUSG00000092329.1, intron 1 of 15) 95507 ENSMUSG00000080549.2 ENSMUSG00000080549 ENSMUST00000116899 Gm22715 miRNA Interval_102319 chr3 21851064 21851507 + 0 NA Intergenic Intergenic -88754 ENSMUSG00000103441.1 ENSMUSG00000103441 ENSMUST00000193217 7530428D23Rik transcribed_processed_pseudogene Interval_84376 chr19 10462332 10462820 + 0 NA Intergenic Intergenic -5103 ENSMUSG00000090291.3 ENSMUSG00000090291 ENSMUST00000171400 Lrrc10b protein_coding Interval_115873 chr4 105402934 105403512 + 0 NA Intergenic Intergenic -28277 ENSMUSG00000081819.1 ENSMUSG00000081819 ENSMUST00000118507 Gm12722 processed_pseudogene Interval_122214 chr5 19962380 19963206 + 0 NA intron (ENSMUSG00000040003.18, intron 1 of 21) protein_coding-intron (ENSMUSG00000040003.18, intron 2 of 22) -129822 ENSMUSG00000096882.1 ENSMUSG00000096882 ENSMUST00000083029 Gm23570 snRNA Interval_123627 chr5 33935591 33937010 + 0 NA promoter-TSS (ENSMUSG00000029111.7) protein_coding-promoter-TSS (ENSMUSG00000029111.7) -50 ENSMUSG00000029111.7 ENSMUSG00000029111 ENSMUST00000132942 Nelfa protein_coding Interval_154579 chr8 21010495 21011032 + 0 NA Intergenic Intergenic -14782 ENSMUSG00000074447.2 ENSMUSG00000074447 ENSMUST00000076754 Defa21 protein_coding Interval_7096 chr1 125714830 125715841 + 0 NA intron (ENSMUSG00000026343.6, intron 1 of 1) protein_coding-intron (ENSMUSG00000026343.6, intron 1 of 1) -46719 ENSMUSG00000101015.1 ENSMUSG00000101015 ENSMUST00000191239 Gm18444 processed_pseudogene Interval_5546 chr1 89730096 89731158 + 0 NA intron (ENSMUSG00000055013.16, intron 10 of 16) protein_coding-intron (ENSMUSG00000055013.16, intron 10 of 17) 45825 ENSMUSG00000088775.1 ENSMUSG00000088775 ENSMUST00000158150 Gm26037 misc_RNA Interval_135050 chr6 34971434 34972493 + 0 NA intron (ENSMUSG00000029847.13, intron 3 of 11) protein_coding-intron (ENSMUSG00000029847.13, intron 2 of 7) 16441 ENSMUSG00000029847.13 ENSMUSG00000029847 ENSMUST00000144079 Slc23a4 protein_coding Interval_110822 chr4 8737430 8738155 + 0 NA intron (ENSMUSG00000041235.12, intron 1 of 1) protein_coding-intron (ENSMUSG00000041235.12, intron 1 of 37) -64210 ENSMUSG00000082122.1 ENSMUSG00000082122 ENSMUST00000120923 Gm11809 processed_pseudogene Interval_24476 chr11 33543703 33545228 + 0 NA Intergenic Intergenic 34494 ENSMUSG00000020159.8 ENSMUSG00000020159 ENSMUST00000135350 Gabrp protein_coding Interval_17860 chr10 80450490 80451350 + 0 NA Intergenic Intergenic -19935 ENSMUSG00000020167.14 ENSMUSG00000020167 ENSMUST00000156244 Tcf3 protein_coding Interval_122773 chr5 25286104 25286335 + 0 NA intron (ENSMUSG00000038056.15, intron 10 of 17) protein_coding-intron (ENSMUSG00000038056.15, intron 51 of 58) 13856 ENSMUSG00000038056.15 ENSMUSG00000038056 ENSMUST00000172626 Kmt2c protein_coding Interval_129447 chr5 120220163 120221994 + 0 NA Intergenic Intergenic -34180 ENSMUSG00000106915.1 ENSMUSG00000106915 ENSMUST00000202782 Gm42655 TEC Interval_66846 chr16 38095478 38096084 + 0 NA intron (ENSMUSG00000022812.14, intron 1 of 11) protein_coding-intron (ENSMUSG00000022812.14, intron 1 of 10) -62227 ENSMUSG00000095395.2 ENSMUSG00000095395 ENSMUST00000179548 Gm25617 snoRNA Interval_121880 chr5 9100164 9101733 + 0 NA intron (ENSMUSG00000079659.5, intron 1 of 5) protein_coding-intron (ENSMUSG00000079659.5, intron 1 of 4) -54785 ENSMUSG00000079659.5 ENSMUSG00000079659 ENSMUST00000200542 Tmem243 protein_coding Interval_60706 chr15 76278210 76278640 + 0 NA intron (ENSMUSG00000049653.5, intron 1 of 4) protein_coding-intron (ENSMUSG00000049653.5, intron 1 of 4) -10158 ENSMUSG00000115946.2 ENSMUSG00000115946 ENSMUST00000232408 Mirt2 antisense Interval_6511 chr1 113721615 113722203 + 0 NA Intergenic Intergenic -3862 ENSMUSG00000084546.1 ENSMUSG00000084546 ENSMUST00000122597 Gm24937 snoRNA Interval_119473 chr4 137801019 137802137 + 0 NA Intergenic Intergenic -19387 ENSMUSG00000028766.10 ENSMUSG00000028766 ENSMUST00000143757 Alpl protein_coding Interval_295 KZ289091.1 259480 260151 + 0 NA NA NA NA NA Interval_129282 chr5 118652845 118653672 + 0 NA intron (ENSMUSG00000018076.12, intron 2 of 4) protein_coding-intron (ENSMUSG00000018076.12, intron 2 of 30) 8885 ENSMUSG00000107116.1 ENSMUSG00000107116 ENSMUST00000202545 Gm43274 TEC Interval_132122 chr5 142844408 142846092 + 0 NA Intergenic Intergenic 7949 ENSMUSG00000082308.1 ENSMUSG00000082308 ENSMUST00000117498 Gm15770 processed_pseudogene Interval_161159 chr8 117894648 117895571 + 0 NA Intergenic Intergenic 93047 ENSMUSG00000074065.4 ENSMUSG00000074065 ENSMUST00000098368 Gm10617 pseudogene Interval_27628 chr11 69122194 69125784 + 0 NA TTS (ENSMUSG00000023781.2) protein_coding-TTS (ENSMUSG00000023781.2) -1400 ENSMUSG00000097386.1 ENSMUSG00000097386 ENSMUST00000180487 9130213A22Rik antisense Interval_12714 chr10 4450545 4451650 + 0 NA TTS (ENSMUSG00000061759.15) protein_coding-TTS (ENSMUSG00000061759.15) 18457 ENSMUSG00000061759.15 ENSMUSG00000061759 ENSMUST00000131636 Armt1 protein_coding Interval_154492 chr8 18648570 18649030 + 0 NA intron (ENSMUSG00000039842.15, intron 9 of 11) protein_coding-intron (ENSMUSG00000039842.15, intron 9 of 13) 8189 ENSMUSG00000090334.1 ENSMUSG00000090334 ENSMUST00000164712 Gm17149 processed_pseudogene Interval_148655 chr7 83878234 83879415 + 0 NA TTS (ENSMUSG00000109452.1) TEC-TTS (ENSMUSG00000109452.1) 4462 ENSMUSG00000109452.1 ENSMUSG00000109452 ENSMUST00000207920 Gm44530 TEC Interval_1305 chr1 19504367 19504604 + 0 NA Intergenic Intergenic 9434 ENSMUSG00000084668.1 ENSMUSG00000084668 ENSMUST00000122719 Gm24633 snoRNA Interval_83578 chr18 90017890 90018468 + 0 NA exon (ENSMUSG00000118035.1, exon 1 of 1) processed_pseudogene-exon (ENSMUSG00000118035.1, exon 1 of 1) 900 ENSMUSG00000118035.1 ENSMUSG00000118035 ENSMUST00000237041 Gm6173 processed_pseudogene Interval_81487 chr18 61068249 61069090 + 0 NA intron (ENSMUSG00000024620.11, intron 10 of 23) protein_coding-intron (ENSMUSG00000024620.11, intron 9 of 22) 23469 ENSMUSG00000024620.11 ENSMUSG00000024620 ENSMUST00000115274 Pdgfrb protein_coding Interval_93268 chr2 71577875 71578137 + 0 NA Intergenic Intergenic -32056 ENSMUSG00000023391.8 ENSMUSG00000023391 ENSMUST00000134249 Dlx2 protein_coding Interval_6726 chr1 119025733 119025955 + 0 NA intron (ENSMUSG00000048402.14, intron 1 of 6) protein_coding-intron (ENSMUSG00000048402.14, intron 1 of 13) 27495 ENSMUSG00000048402.14 ENSMUSG00000048402 ENSMUST00000159678 Gli2 protein_coding Interval_120774 chr4 150578074 150578375 + 0 NA intron (ENSMUSG00000039852.17, intron 3 of 4) protein_coding-intron (ENSMUSG00000039852.17, intron 6 of 16) -9680 ENSMUSG00000085213.1 ENSMUSG00000085213 ENSMUST00000128800 Gm13091 antisense Interval_55806 chr14 100349966 100351764 + 0 NA Intergenic Intergenic 64700 ENSMUSG00000110273.1 ENSMUSG00000110273 ENSMUST00000211525 Gm41231 lincRNA Interval_118759 chr4 133574137 133575491 + 0 NA promoter-TSS (ENSMUSG00000028850.2) protein_coding-promoter-TSS (ENSMUSG00000028850.2) -4890 ENSMUSG00000028850.2 ENSMUSG00000028850 ENSMUST00000154648 Gpatch3 protein_coding Interval_336 chr1 4256149 4257163 + 0 NA intron (ENSMUSG00000102948.1, intron 1 of 1) processed_pseudogene-intron (ENSMUSG00000102948.1, intron 1 of 1) 3863 ENSMUSG00000102948.1 ENSMUSG00000102948 ENSMUST00000195384 Gm6101 processed_pseudogene Interval_147469 chr7 67543807 67544040 + 0 NA intron (ENSMUSG00000030556.13, intron 3 of 3) protein_coding-intron (ENSMUSG00000030556.13, intron 7 of 9) 26780 ENSMUSG00000087926.1 ENSMUSG00000087926 ENSMUST00000157301 Gm23233 snoRNA Interval_70056 chr17 5041421 5042188 + 0 NA intron (ENSMUSG00000069729.14, intron 2 of 19) protein_coding-intron (ENSMUSG00000069729.14, intron 2 of 18) 46865 ENSMUSG00000069729.14 ENSMUSG00000069729 ENSMUST00000146703 Arid1b protein_coding Interval_107800 chr3 115392120 115392362 + 0 NA TTS (ENSMUSG00000088346.1) snoRNA-TTS (ENSMUSG00000088346.1) 687 ENSMUSG00000088346.1 ENSMUSG00000088346 ENSMUST00000157721 Gm22337 snoRNA Interval_165817 chr9 53404493 53405823 + 0 NA promoter-TSS (ENSMUSG00000005131.4) protein_coding-promoter-TSS (ENSMUSG00000005131.4) -140 ENSMUSG00000005131.4 ENSMUSG00000005131 ENSMUST00000217318 4930550C14Rik protein_coding Interval_163636 chr9 22857056 22857316 + 0 NA intron (ENSMUSG00000035919.16, intron 21 of 22) protein_coding-intron (ENSMUSG00000035919.16, intron 20 of 21) -84351 ENSMUSG00000098940.1 ENSMUSG00000098940 ENSMUST00000184937 Gm27639 snRNA Interval_15999 chr10 60014359 60014770 + 0 NA intron (ENSMUSG00000044475.14, intron 5 of 10) protein_coding-intron (ENSMUSG00000044475.14, intron 5 of 10) 11759 ENSMUSG00000044475.14 ENSMUSG00000044475 ENSMUST00000164083 Ascc1 protein_coding Interval_130458 chr5 127800829 127802199 + 0 NA intron (ENSMUSG00000034310.8, intron 5 of 8) protein_coding-intron (ENSMUSG00000034310.8, intron 5 of 8) -75819 ENSMUSG00000061331.5 ENSMUSG00000061331 ENSMUST00000109542 Gm17132 unprocessed_pseudogene Interval_87185 chr19 46700228 46700683 + 0 NA intron (ENSMUSG00000062376.7, intron 3 of 4) protein_coding-intron (ENSMUSG00000062376.7, intron 3 of 4) -7513 ENSMUSG00000003559.8 ENSMUSG00000003559 ENSMUST00000235266 As3mt protein_coding Interval_173168 chrX 73747510 73748096 + 0 NA Intergenic Intergenic -4871 ENSMUSG00000088823.1 ENSMUSG00000088823 ENSMUST00000158198 Gm25226 snoRNA Interval_77852 chr18 4622693 4623093 + 0 NA Intergenic Intergenic -11985 ENSMUSG00000033960.6 ENSMUSG00000033960 ENSMUST00000234153 Jcad protein_coding Interval_91303 chr2 37569004 37569760 + 0 NA TTS (ENSMUSG00000026915.16) protein_coding-TTS (ENSMUSG00000026915.16) 17136 ENSMUSG00000026915.16 ENSMUSG00000026915 ENSMUST00000144206 Strbp protein_coding Interval_84677 chr19 14970836 14971854 + 0 NA Intergenic Intergenic -10579 ENSMUSG00000063586.1 ENSMUSG00000063586 ENSMUST00000072982 Gm5513 processed_pseudogene Interval_59671 chr15 57792478 57793553 + 0 NA intron (ENSMUSG00000071757.10, intron 2 of 2) protein_coding-intron (ENSMUSG00000071757.10, intron 2 of 3) -54349 ENSMUSG00000047807.10 ENSMUSG00000047807 ENSMUST00000176703 9330154K18Rik antisense Interval_85502 chr19 27575293 27575543 + 0 NA Intergenic Intergenic 62910 ENSMUSG00000118072.1 ENSMUSG00000118072 ENSMUST00000235994 Gm50101 processed_pseudogene Interval_81530 chr18 61489129 61490031 + 0 NA TTS (ENSMUSG00000117713.1) lincRNA-TTS (ENSMUSG00000117713.1) 4814 ENSMUSG00000117713.1 ENSMUSG00000117713 ENSMUST00000237683 Gm46637 lincRNA Interval_128774 chr5 115186841 115188001 + 0 NA intron (ENSMUSG00000029544.16, intron 1 of 5) protein_coding-intron (ENSMUSG00000029544.16, intron 1 of 5) -3277 ENSMUSG00000029544.16 ENSMUSG00000029544 ENSMUST00000201900 Cabp1 protein_coding Interval_70527 chr17 11538979 11539261 + 0 NA intron (ENSMUSG00000023826.16, intron 5 of 10) protein_coding-intron (ENSMUSG00000023826.16, intron 6 of 6) 6678 ENSMUSG00000099618.1 ENSMUSG00000099618 ENSMUST00000185957 Gm28118 processed_pseudogene Interval_40478 chr12 105099066 105100408 + 0 NA Intergenic Intergenic -35459 ENSMUSG00000113051.1 ENSMUSG00000113051 ENSMUST00000222354 Gm47672 processed_pseudogene Interval_97944 chr2 146002220 146002834 + 0 NA intron (ENSMUSG00000037143.17, intron 9 of 26) protein_coding-intron (ENSMUSG00000037143.17, intron 9 of 15) -67813 ENSMUSG00000001767.5 ENSMUSG00000001767 ENSMUST00000147904 Crnkl1 protein_coding Interval_132466 chr5 145130250 145130810 + 0 NA TTS (ENSMUSG00000029622.16) protein_coding-TTS (ENSMUSG00000029622.16) 5096 ENSMUSG00000029623.14 ENSMUSG00000029623 ENSMUST00000148781 Pdap1 protein_coding Interval_29377 chr11 83511503 83512163 + 0 NA TTS (ENSMUSG00000018925.3) protein_coding-TTS (ENSMUSG00000018925.3) -9323 ENSMUSG00000065307.1 ENSMUSG00000065307 ENSMUST00000083373 Gm23247 snRNA Interval_116249 chr4 109053467 109053732 + 0 NA intron (ENSMUSG00000053510.12, intron 6 of 15) protein_coding-intron (ENSMUSG00000053510.12, intron 20 of 30) 29393 ENSMUSG00000053510.12 ENSMUSG00000053510 ENSMUST00000125063 Nrd1 protein_coding Interval_24224 chr11 31634154 31634476 + 0 NA Intergenic Intergenic 37412 ENSMUSG00000044502.16 ENSMUSG00000044502 ENSMUST00000109415 Bod1 protein_coding Interval_160178 chr8 106953762 106953957 + 0 NA intron (ENSMUSG00000041308.6, intron 1 of 6) protein_coding-intron (ENSMUSG00000041308.6, intron 1 of 5) 18109 ENSMUSG00000041308.6 ENSMUSG00000041308 ENSMUST00000212298 Sntb2 protein_coding Interval_104228 chr3 61244093 61245461 + 0 NA Intergenic Intergenic 46669 ENSMUSG00000102242.1 ENSMUSG00000102242 ENSMUST00000194615 Gm37719 processed_pseudogene Interval_156734 chr8 57722930 57723182 + 0 NA intron (ENSMUSG00000110162.1, intron 2 of 2) lincRNA-intron (ENSMUSG00000110162.1, intron 2 of 2) 23282 ENSMUSG00000110162.1 ENSMUSG00000110162 ENSMUST00000209274 Gm45356 lincRNA Interval_127196 chr5 101082344 101083673 + 0 NA Intergenic Intergenic -169301 ENSMUSG00000106255.1 ENSMUSG00000106255 ENSMUST00000199211 Gm36793 lincRNA Interval_22564 chr11 11808355 11809781 + 0 NA promoter-TSS (ENSMUSG00000035455.12) protein_coding-promoter-TSS (ENSMUSG00000035455.12) -106 ENSMUSG00000035455.12 ENSMUSG00000035455 ENSMUST00000150714 Fignl1 protein_coding Interval_115635 chr4 101517748 101518258 + 0 NA intron (ENSMUSG00000028528.17, intron 1 of 2) protein_coding-intron (ENSMUSG00000028528.17, intron 1 of 18) 21372 ENSMUSG00000028528.17 ENSMUSG00000028528 ENSMUST00000106933 Dnajc6 protein_coding Interval_109450 chr3 142517814 142519125 + 0 NA exon (ENSMUSG00000105504.4, exon 11 of 12) protein_coding-exon (ENSMUSG00000105504.4, exon 11 of 12) -11873 ENSMUSG00000040253.15 ENSMUSG00000040253 ENSMUST00000045097 Gbp7 protein_coding Interval_155798 chr8 38659243 38661599 + 0 NA intron (ENSMUSG00000110236.1, intron 1 of 2) protein_coding-intron (ENSMUSG00000039539.13, intron 1 of 7) 658 ENSMUSG00000110236.1 ENSMUSG00000110236 ENSMUST00000210223 Gm40493 antisense Interval_35147 chr12 17565382 17565731 + 0 NA intron (ENSMUSG00000113093.1, intron 2 of 2) processed_transcript-intron (ENSMUSG00000113093.1, intron 2 of 2) 2631 ENSMUSG00000113093.1 ENSMUSG00000113093 ENSMUST00000223365 Gm36862 processed_transcript Interval_51208 chr14 25015071 25016086 + 0 NA Intergenic Intergenic -15519 ENSMUSG00000114416.1 ENSMUSG00000114416 ENSMUST00000224831 Gm47907 TEC Interval_157001 chr8 64244264 64244543 + 0 NA Intergenic Intergenic -38132 ENSMUSG00000053626.5 ENSMUSG00000053626 ENSMUST00000210256 Tll1 protein_coding Interval_155671 chr8 35966825 35967112 + 0 NA Intergenic Intergenic 10610 ENSMUSG00000080592.1 ENSMUSG00000080592 ENSMUST00000116942 Gm22030 miRNA Interval_43219 chr13 25562586 25563782 + 0 NA Intergenic Intergenic 20202 ENSMUSG00000080840.1 ENSMUSG00000080840 ENSMUST00000122209 Gm11349 processed_pseudogene Interval_161228 chr8 118901216 118901826 + 0 NA intron (ENSMUSG00000031841.19, intron 5 of 7) protein_coding-intron (ENSMUSG00000031841.19, intron 5 of 13) 174621 ENSMUSG00000087707.1 ENSMUSG00000087707 ENSMUST00000157082 Gm22999 snoRNA Interval_43421 chr13 30566716 30566927 + 0 NA Intergenic Intergenic -21459 ENSMUSG00000038462.3 ENSMUSG00000038462 ENSMUST00000042834 Uqcrfs1 protein_coding Interval_45578 chr13 56010601 56010996 + 0 NA intron (ENSMUSG00000114493.2, intron 1 of 2) antisense-intron (ENSMUSG00000114493.2, intron 1 of 2) 19436 ENSMUSG00000114229.1 ENSMUSG00000114229 ENSMUST00000225745 Gm47072 processed_pseudogene Interval_61142 chr15 79473908 79474370 + 0 NA Intergenic Intergenic 1758 ENSMUSG00000106626.1 ENSMUSG00000106626 ENSMUST00000104762 Gm44302 miRNA Interval_121587 chr5 3635609 3636143 + 0 NA promoter-TSS (ENSMUSG00000005907.14) protein_coding-promoter-TSS (ENSMUSG00000005907.14) 261 ENSMUSG00000005907.14 ENSMUSG00000005907 ENSMUST00000196432 Pex1 protein_coding Interval_93232 chr2 71337881 71338643 + 0 NA intron (ENSMUSG00000027010.16, intron 3 of 17) protein_coding-intron (ENSMUSG00000027010.16, intron 1 of 2) 18479 ENSMUSG00000082190.1 ENSMUSG00000082190 ENSMUST00000117993 Gm13641 processed_pseudogene Interval_168187 chr9 77825384 77826299 + 0 NA Intergenic Intergenic -10189 ENSMUSG00000111250.1 ENSMUSG00000111250 ENSMUST00000214737 Gm47818 lincRNA Interval_16907 chr10 69781574 69782086 + 0 NA intron (ENSMUSG00000069601.14, intron 1 of 42) protein_coding-intron (ENSMUSG00000069601.14, intron 1 of 16) -215469 ENSMUSG00000112729.1 ENSMUSG00000112729 ENSMUST00000220152 Gm46231 processed_pseudogene Interval_78824 chr18 20822892 20823273 + 0 NA intron (ENSMUSG00000033382.15, intron 26 of 28) protein_coding-intron (ENSMUSG00000033382.15, intron 26 of 28) 21510 ENSMUSG00000088549.1 ENSMUSG00000088549 ENSMUST00000157924 Gm24959 snRNA Interval_82331 chr18 70797045 70797235 + 0 NA Intergenic Intergenic 15253 ENSMUSG00000117932.1 ENSMUSG00000117932 ENSMUST00000237143 Gm21046 processed_pseudogene Interval_116367 chr4 110321450 110322670 + 0 NA intron (ENSMUSG00000028546.17, intron 1 of 5) protein_coding-intron (ENSMUSG00000028546.17, intron 1 of 5) -34533 ENSMUSG00000028546.17 ENSMUSG00000028546 ENSMUST00000142722 Elavl4 protein_coding Interval_26435 chr11 57831415 57832924 + 0 NA promoter-TSS (ENSMUSG00000037335.13) protein_coding-promoter-TSS (ENSMUSG00000037335.13) 649 ENSMUSG00000037335.13 ENSMUSG00000037335 ENSMUST00000108845 Hand1 protein_coding Interval_63813 chr16 3556886 3557145 + 0 NA Intergenic Intergenic -21404 ENSMUSG00000088225.1 ENSMUSG00000088225 ENSMUST00000157600 Gm22598 snoRNA Interval_31338 chr11 100129034 100129258 + 0 NA Intergenic Intergenic 5252 ENSMUSG00000054146.8 ENSMUSG00000054146 ENSMUST00000148502 Krt15 protein_coding Interval_35331 chr12 20684274 20684834 + 0 NA Intergenic Intergenic 18213 ENSMUSG00000116635.1 ENSMUSG00000116635 ENSMUST00000232444 Gm49699 transcribed_unprocessed_pseudogene Interval_74563 chr17 53462706 53463597 + 0 NA exon (ENSMUSG00000023931.5, exon 1 of 13) protein_coding-exon (ENSMUSG00000023931.5, exon 1 of 13) 155 ENSMUSG00000023931.5 ENSMUSG00000023931 ENSMUST00000233544 Efhb protein_coding Interval_62554 chr15 94597866 94599573 + 0 NA Intergenic Intergenic -13244 ENSMUSG00000022451.12 ENSMUSG00000022451 ENSMUST00000152590 Twf1 protein_coding Interval_80224 chr18 38378419 38380686 + 0 NA Intergenic Intergenic -19014 ENSMUSG00000118140.1 ENSMUSG00000118140 ENSMUST00000235767 Gm4949 processed_pseudogene Interval_16254 chr10 61733907 61734917 + 0 NA exon (ENSMUSG00000020085.15, exon 7 of 10) protein_coding-exon (ENSMUSG00000020085.15, exon 7 of 10) 6264 ENSMUSG00000020085.15 ENSMUSG00000020085 ENSMUST00000140664 Aifm2 protein_coding Interval_144248 chr7 23893540 23893909 + 0 NA exon (ENSMUSG00000062598.3, exon 1 of 1) protein_coding-exon (ENSMUSG00000062598.3, exon 1 of 1) 1715 ENSMUSG00000062598.3 ENSMUSG00000062598 ENSMUST00000078593 Vmn1r178 protein_coding Interval_41495 chr12 115145757 115145946 + 0 NA promoter-TSS (ENSMUSG00000095204.6) IG_V_gene-promoter-TSS (ENSMUSG00000095204.6) 68 ENSMUSG00000095204.6 ENSMUSG00000095204 ENSMUST00000103522 Ighv1-52 IG_V_gene Interval_126688 chr5 92058840 92059432 + 0 NA intron (ENSMUSG00000029405.16, intron 4 of 5) protein_coding-intron (ENSMUSG00000029405.16, intron 7 of 10) -2944 ENSMUSG00000088712.1 ENSMUSG00000088712 ENSMUST00000158087 Gm22728 scaRNA Interval_151002 chr7 117555837 117556020 + 0 NA intron (ENSMUSG00000030657.11, intron 3 of 6) protein_coding-intron (ENSMUSG00000030657.11, intron 3 of 11) 80436 ENSMUSG00000030657.11 ENSMUSG00000030657 ENSMUST00000161889 Xylt1 protein_coding Interval_162628 chr9 6967777 6968355 + 0 NA intron (ENSMUSG00000047193.16, intron 84 of 89) protein_coding-intron (ENSMUSG00000047193.16, intron 83 of 88) 149522 ENSMUSG00000047193.16 ENSMUSG00000047193 ENSMUST00000139115 Dync2h1 protein_coding Interval_122220 chr5 20252173 20252539 + 0 NA intron (ENSMUSG00000040003.18, intron 2 of 15) protein_coding-intron (ENSMUSG00000040003.18, intron 6 of 22) 8606 ENSMUSG00000106559.1 ENSMUSG00000106559 ENSMUST00000199466 Gm43680 processed_pseudogene Interval_130413 chr5 127445651 127445927 + 0 NA intron (ENSMUSG00000034324.16, intron 2 of 8) protein_coding-intron (ENSMUSG00000034324.16, intron 2 of 8) -107465 ENSMUSG00000034324.16 ENSMUSG00000034324 ENSMUST00000145748 Tmem132c protein_coding Interval_75122 chr17 63671539 63672782 + 0 NA Intergenic Intergenic 30330 ENSMUSG00000117014.1 ENSMUSG00000117014 ENSMUST00000233403 Gm9300 processed_pseudogene Interval_41165 chr12 111579878 111580421 + 0 NA intron (ENSMUSG00000007411.16, intron 1 of 15) protein_coding-intron (ENSMUSG00000007411.16, intron 1 of 15) -5809 ENSMUSG00000096995.2 ENSMUSG00000096995 ENSMUST00000221597 2810029C07Rik bidirectional_promoter_lncRNA Interval_54633 chr14 72516308 72516572 + 0 NA Intergenic Intergenic 16209 ENSMUSG00000108975.1 ENSMUSG00000108975 ENSMUST00000208959 Mlnr-ps unitary_pseudogene Interval_77066 chr17 86176977 86178695 + 0 NA TTS (ENSMUSG00000045038.14) protein_coding-TTS (ENSMUSG00000045038.14) 2261 ENSMUSG00000117546.1 ENSMUSG00000117546 ENSMUST00000234087 AC154542.1 TEC Interval_95659 chr2 113724477 113724745 + 0 NA Intergenic Intergenic -16061 ENSMUSG00000084798.1 ENSMUSG00000084798 ENSMUST00000123377 4930533B01Rik antisense Interval_74068 chr17 46383229 46384424 + 0 NA promoter-TSS (ENSMUSG00000015597.17) protein_coding-promoter-TSS (ENSMUSG00000015597.17) -16230 ENSMUSG00000015597.17 ENSMUSG00000015597 ENSMUST00000136017 Zfp318 protein_coding Interval_74398 chr17 49933594 49934244 + 0 NA intron (ENSMUSG00000118549.1, intron 6 of 10) unprocessed_pseudogene-intron (ENSMUSG00000118549.1, intron 6 of 10) 6280 ENSMUSG00000118549.1 ENSMUSG00000118549 ENSMUST00000239022 AC114824.1 unprocessed_pseudogene Interval_136382 chr6 54004769 54004987 + 0 NA intron (ENSMUSG00000108060.2, intron 2 of 3) processed_transcript-intron (ENSMUSG00000108060.2, intron 2 of 3) 26149 ENSMUSG00000108060.2 ENSMUSG00000108060 ENSMUST00000203047 4921529L05Rik processed_transcript Interval_84214 chr19 8818959 8820716 + 0 NA promoter-TSS (ENSMUSG00000071660.10) protein_coding-promoter-TSS (ENSMUSG00000071660.10) -435 ENSMUSG00000071659.4 ENSMUSG00000071659 ENSMUST00000237237 Hnrnpul2 protein_coding Interval_39226 chr12 86033942 86034368 + 0 NA intron (ENSMUSG00000012609.19, intron 6 of 7) protein_coding-intron (ENSMUSG00000012609.19, intron 33 of 33) -35018 ENSMUSG00000103301.1 ENSMUSG00000103301 ENSMUST00000192206 Gm37804 TEC Interval_29753 chr11 86578955 86581511 + 0 NA Intergenic Intergenic 3925 ENSMUSG00000065455.1 ENSMUSG00000065455 ENSMUST00000083521 Mir21a miRNA Interval_108101 chr3 121503760 121504012 + 0 NA intron (ENSMUSG00000039865.8, intron 9 of 14) protein_coding-intron (ENSMUSG00000039865.8, intron 9 of 14) 23221 ENSMUSG00000039865.8 ENSMUSG00000039865 ENSMUST00000199422 Slc44a3 protein_coding Interval_53846 chr14 62698500 62698674 + 0 NA intron (ENSMUSG00000035161.7, intron 15 of 17) protein_coding-intron (ENSMUSG00000035161.7, intron 15 of 18) 6311 ENSMUSG00000035161.7 ENSMUSG00000035161 ENSMUST00000225193 Ints6 protein_coding Interval_145550 chr7 35554169 35556162 + 0 NA promoter-TSS (ENSMUSG00000034875.5) protein_coding-promoter-TSS (ENSMUSG00000034875.5) 29 ENSMUSG00000034875.5 ENSMUSG00000034875 ENSMUST00000123469 Nudt19 protein_coding Interval_65768 chr16 28490270 28491346 + 0 NA intron (ENSMUSG00000022523.10, intron 1 of 4) protein_coding-intron (ENSMUSG00000022523.10, intron 1 of 3) 109235 ENSMUSG00000076064.1 ENSMUSG00000076064 ENSMUST00000102110 Mir690 miRNA Interval_100108 chr2 167112503 167113438 + 0 NA intron (ENSMUSG00000050556.9, intron 1 of 1) protein_coding-intron (ENSMUSG00000050556.9, intron 2 of 2) 19411 ENSMUSG00000083436.1 ENSMUSG00000083436 ENSMUST00000121824 Gm11471 processed_pseudogene Interval_29453 chr11 84087767 84089608 + 0 NA intron (ENSMUSG00000018651.14, intron 3 of 7) protein_coding-intron (ENSMUSG00000018651.14, intron 11 of 15) -5731 ENSMUSG00000018651.14 ENSMUSG00000018651 ENSMUST00000134994 Tada2a protein_coding Interval_2494 chr1 39736124 39736968 + 0 NA Intergenic Intergenic -15549 ENSMUSG00000057173.8 ENSMUSG00000057173 ENSMUST00000126760 Rfx8 protein_coding Interval_51307 chr14 26298658 26299640 + 0 NA Intergenic Intergenic -3556 ENSMUSG00000114921.1 ENSMUSG00000114921 ENSMUST00000223947 Gm18578 processed_pseudogene Interval_87175 chr19 46615938 46617574 + 0 NA intron (ENSMUSG00000047731.17, intron 2 of 2) protein_coding-intron (ENSMUSG00000047731.17, intron 2 of 4) 17632 ENSMUSG00000047731.17 ENSMUSG00000047731 ENSMUST00000111855 Wbp1l protein_coding Interval_22532 chr11 11550303 11550495 + 0 NA Intergenic Intergenic -7022 ENSMUSG00000087452.1 ENSMUSG00000087452 ENSMUST00000146304 Gm11998 antisense Interval_44156 chr13 41288547 41289418 + 0 NA Intergenic Intergenic -15005 ENSMUSG00000090853.1 ENSMUSG00000090853 ENSMUST00000163881 Gm17364 protein_coding Interval_114623 chr4 83273031 83274391 + 0 NA intron (ENSMUSG00000038172.14, intron 2 of 19) protein_coding-intron (ENSMUSG00000038172.14, intron 2 of 6) 11458 ENSMUSG00000038172.14 ENSMUSG00000038172 ENSMUST00000148811 Ttc39b protein_coding Interval_161265 chr8 119384277 119385138 + 0 NA intron (ENSMUSG00000110470.1, intron 3 of 3) lincRNA-intron (ENSMUSG00000110470.1, intron 3 of 3) 6011 ENSMUSG00000110470.1 ENSMUSG00000110470 ENSMUST00000212135 Gm45723 lincRNA Interval_170727 chr9 110364756 110364958 + 0 NA intron (ENSMUSG00000032485.14, intron 2 of 2) protein_coding-intron (ENSMUSG00000032485.14, intron 3 of 22) 3240 ENSMUSG00000032485.14 ENSMUSG00000032485 ENSMUST00000196424 Scap protein_coding Interval_50832 chr14 20115609 20116669 + 0 NA intron (ENSMUSG00000045107.5, intron 1 of 1) protein_coding-intron (ENSMUSG00000045107.5, intron 1 of 1) 22395 ENSMUSG00000045107.5 ENSMUSG00000045107 ENSMUST00000226090 Saysd1 protein_coding Interval_140155 chr6 114913321 114913721 + 0 NA intron (ENSMUSG00000030315.15, intron 2 of 5) protein_coding-intron (ENSMUSG00000030315.15, intron 1 of 4) 8295 ENSMUSG00000030315.15 ENSMUSG00000030315 ENSMUST00000204693 Vgll4 protein_coding Interval_155035 chr8 25839920 25841669 + 0 NA promoter-TSS (ENSMUSG00000031575.18) protein_coding-promoter-TSS (ENSMUSG00000031575.18) -7249 ENSMUSG00000031575.18 ENSMUSG00000031575 ENSMUST00000211188 Ash2l protein_coding Interval_43556 chr13 33120740 33120981 + 0 NA exon (ENSMUSG00000082893.1, exon 1 of 1) processed_pseudogene-exon (ENSMUSG00000082893.1, exon 1 of 1) 462 ENSMUSG00000082893.1 ENSMUSG00000082893 ENSMUST00000121346 Gm11383 processed_pseudogene Interval_139966 chr6 113099626 113100132 + 0 NA intron (ENSMUSG00000034269.12, intron 1 of 2) protein_coding-intron (ENSMUSG00000034269.12, intron 1 of 21) -10538 ENSMUSG00000034269.12 ENSMUSG00000034269 ENSMUST00000156048 Setd5 protein_coding Interval_131718 chr5 139480105 139480991 + 0 NA intron (ENSMUSG00000053581.13, intron 3 of 3) protein_coding-intron (ENSMUSG00000053581.13, intron 3 of 6) 3916 ENSMUSG00000053581.13 ENSMUSG00000053581 ENSMUST00000143889 Zfand2a protein_coding Interval_40034 chr12 100639571 100640079 + 0 NA intron (ENSMUSG00000021180.9, intron 3 of 16) protein_coding-intron (ENSMUSG00000021180.9, intron 3 of 17) -13032 ENSMUSG00000113250.1 ENSMUSG00000113250 ENSMUST00000221653 Gm48585 TEC Interval_94264 chr2 87167035 87168663 + 0 NA promoter-TSS (ENSMUSG00000081041.1) processed_pseudogene-promoter-TSS (ENSMUSG00000081041.1) -534 ENSMUSG00000081041.1 ENSMUSG00000081041 ENSMUST00000120843 Nlk-ps1 processed_pseudogene Interval_137007 chr6 66042362 66042606 + 0 NA Intergenic Intergenic 46847 ENSMUSG00000108100.1 ENSMUSG00000108100 ENSMUST00000203735 Gm5876 processed_pseudogene Interval_132233 chr5 143500545 143501674 + 0 NA intron (ENSMUSG00000039206.13, intron 12 of 14) protein_coding-intron (ENSMUSG00000039206.13, intron 12 of 14) 17073 ENSMUSG00000001847.14 ENSMUSG00000001847 ENSMUST00000131513 Rac1 protein_coding Interval_118477 chr4 131915138 131915574 + 0 NA intron (ENSMUSG00000085667.1, intron 1 of 1) processed_transcript-intron (ENSMUSG00000085667.1, intron 2 of 4) 160 ENSMUSG00000085667.1 ENSMUSG00000085667 ENSMUST00000132111 Gm12992 processed_transcript Interval_22982 chr11 18370080 18371880 + 0 NA Intergenic Intergenic -43309 ENSMUSG00000081302.1 ENSMUSG00000081302 ENSMUST00000119030 Gm12020 processed_pseudogene Interval_127246 chr5 101847152 101848669 + 0 NA intron (ENSMUSG00000043940.15, intron 60 of 64) protein_coding-intron (ENSMUSG00000043940.15, intron 62 of 66) 10458 ENSMUSG00000092354.7 ENSMUSG00000092354 ENSMUST00000174312 Gm20548 antisense Interval_81337 chr18 58260795 58261344 + 0 NA Intergenic Intergenic -29494 ENSMUSG00000089095.1 ENSMUSG00000089095 ENSMUST00000158470 Gm25660 rRNA Interval_27977 chr11 71784271 71784483 + 0 NA exon (ENSMUSG00000020811.16, exon 7 of 9) protein_coding-exon (ENSMUSG00000020811.16, exon 7 of 9) 34457 ENSMUSG00000020811.16 ENSMUSG00000020811 ENSMUST00000132095 Wscd1 protein_coding Interval_36647 chr12 51741462 51742993 + 0 NA intron (ENSMUSG00000020955.9, intron 5 of 5) protein_coding-intron (ENSMUSG00000020955.9, intron 5 of 5) -1885 ENSMUSG00000089346.1 ENSMUSG00000089346 ENSMUST00000158721 Gm22663 snRNA Interval_56244 chr14 114821745 114821950 + 0 NA promoter-TSS (ENSMUSG00000103140.1) TEC-promoter-TSS (ENSMUSG00000103140.1) -622 ENSMUSG00000103140.1 ENSMUSG00000103140 ENSMUST00000194590 Gm37495 TEC Interval_163205 chr9 18194276 18194965 + 0 NA Intergenic Intergenic 95240 ENSMUSG00000111870.1 ENSMUSG00000111870 ENSMUST00000213534 Gm7692 processed_pseudogene Interval_40228 chr12 102642340 102642562 + 0 NA intron (ENSMUSG00000057963.9, intron 2 of 4) protein_coding-intron (ENSMUSG00000057963.9, intron 2 of 9) -1517 ENSMUSG00000057963.9 ENSMUSG00000057963 ENSMUST00000178697 Itpk1 protein_coding Interval_74088 chr17 46525515 46526172 + 0 NA promoter-TSS (ENSMUSG00000040327.16) protein_coding-promoter-TSS (ENSMUSG00000040327.16) -24772 ENSMUSG00000040327.16 ENSMUSG00000040327 ENSMUST00000183163 Cul9 protein_coding Interval_148386 chr7 80947118 80948223 + 0 NA promoter-TSS (ENSMUSG00000025724.12) protein_coding-promoter-TSS (ENSMUSG00000025724.12) -31340 ENSMUSG00000025724.12 ENSMUSG00000025724 ENSMUST00000136556 Sec11a protein_coding Interval_116438 chr4 112057016 112057315 + 0 NA Intergenic Intergenic -24305 ENSMUSG00000055960.12 ENSMUSG00000055960 ENSMUST00000106566 Skint4 protein_coding Interval_140285 chr6 116135855 116136779 + 0 NA intron (ENSMUSG00000030126.17, intron 2 of 3) protein_coding-intron (ENSMUSG00000030126.17, intron 2 of 5) 28667 ENSMUSG00000092625.2 ENSMUSG00000092625 ENSMUST00000174032 Gm20404 antisense Interval_124908 chr5 60076641 60076946 + 0 NA Intergenic Intergenic -50910 ENSMUSG00000106170.1 ENSMUSG00000106170 ENSMUST00000200147 Gm43393 processed_pseudogene Interval_123638 chr5 34139806 34140069 + 0 NA intron (ENSMUSG00000045102.12, intron 3 of 24) protein_coding-intron (ENSMUSG00000045102.12, intron 2 of 24) 21197 ENSMUSG00000106902.1 ENSMUSG00000106902 ENSMUST00000202325 4930557J02Rik antisense Interval_36235 chr12 40106877 40107182 + 0 NA intron (ENSMUSG00000002565.16, intron 3 of 13) protein_coding-intron (ENSMUSG00000002565.16, intron 3 of 15) 27154 ENSMUSG00000002565.16 ENSMUSG00000002565 ENSMUST00000002640 Scin protein_coding Interval_51123 chr14 23687098 23687345 + 0 NA intron (ENSMUSG00000063142.15, intron 1 of 28) protein_coding-intron (ENSMUSG00000063142.15, intron 1 of 28) 126973 ENSMUSG00000100100.1 ENSMUSG00000100100 ENSMUST00000187439 Gm29626 antisense Interval_162391 chr8 127856572 127856880 + 0 NA Intergenic Intergenic 259020 ENSMUSG00000088580.1 ENSMUSG00000088580 ENSMUST00000157955 Gm22968 rRNA Interval_155059 chr8 26029843 26030100 + 0 NA exon (ENSMUSG00000037234.17, exon 22 of 22) protein_coding-exon (ENSMUSG00000037234.17, exon 22 of 22) 6561 ENSMUSG00000110183.1 ENSMUSG00000110183 ENSMUST00000209647 Gm45411 antisense Interval_69147 chr16 90952761 90954004 + 0 NA promoter-TSS (ENSMUSG00000093256.1) miRNA-promoter-TSS (ENSMUSG00000093256.1) -413 ENSMUSG00000093256.1 ENSMUSG00000093256 ENSMUST00000175515 Gm22933 miRNA Interval_45770 chr13 57930093 57930417 + 0 NA Intergenic Intergenic -21923 ENSMUSG00000056222.15 ENSMUSG00000056222 ENSMUST00000185905 Spock1 protein_coding Interval_16882 chr10 69462913 69463546 + 0 NA intron (ENSMUSG00000069601.14, intron 1 of 1) protein_coding-intron (ENSMUSG00000069601.14, intron 1 of 1) -39481 ENSMUSG00000111899.1 ENSMUSG00000111899 ENSMUST00000218846 Gm18636 processed_pseudogene Interval_112957 chr4 46450504 46452741 + 0 NA intron (ENSMUSG00000028333.10, intron 1 of 6) protein_coding-intron (ENSMUSG00000028333.10, intron 1 of 6) 720 ENSMUSG00000028333.10 ENSMUSG00000028333 ENSMUST00000102926 Anp32b protein_coding Interval_6843 chr1 120042134 120045190 + 0 NA intron (ENSMUSG00000026387.15, intron 5 of 12) protein_coding-intron (ENSMUSG00000026387.15, intron 6 of 13) 30412 ENSMUSG00000050777.7 ENSMUSG00000050777 ENSMUST00000056089 Tmem37 protein_coding Interval_138907 chr6 93363716 93364486 + 0 NA Intergenic Intergenic -28513 ENSMUSG00000077180.1 ENSMUSG00000077180 ENSMUST00000103992 Gm25094 snoRNA Interval_71888 chr17 26803196 26803465 + 0 NA Intergenic Intergenic 16974 ENSMUSG00000024191.15 ENSMUSG00000024191 ENSMUST00000131362 Bnip1 protein_coding Interval_84358 chr19 10356849 10357865 + 0 NA Intergenic Intergenic -32126 ENSMUSG00000024743.16 ENSMUSG00000024743 ENSMUST00000235717 Syt7 protein_coding Interval_29127 chr11 80484403 80484867 + 0 NA intron (ENSMUSG00000035441.14, intron 21 of 21) protein_coding-intron (ENSMUSG00000035441.14, intron 21 of 21) 7579 ENSMUSG00000048895.13 ENSMUSG00000048895 ENSMUST00000147694 Cdk5r1 protein_coding Interval_108792 chr3 131295330 131295707 + 0 NA exon (ENSMUSG00000027983.13, exon 3 of 5) protein_coding-exon (ENSMUSG00000027983.13, exon 3 of 5) -7125 ENSMUSG00000097761.1 ENSMUSG00000097761 ENSMUST00000181438 4930534D22Rik antisense Interval_113773 chr4 58498795 58500035 + 0 NA promoter-TSS (ENSMUSG00000038668.14) protein_coding-promoter-TSS (ENSMUSG00000038668.14) -15590 ENSMUSG00000083834.1 ENSMUSG00000083834 ENSMUST00000119701 Gm12577 processed_pseudogene Interval_16330 chr10 62278665 62279543 + 0 NA intron (ENSMUSG00000037012.18, intron 14 of 17) protein_coding-intron (ENSMUSG00000037012.18, intron 16 of 19) 11225 ENSMUSG00000037012.18 ENSMUSG00000037012 ENSMUST00000149534 Hk1 protein_coding Interval_35525 chr12 24462046 24462474 + 0 NA Intergenic Intergenic 31396 ENSMUSG00000057160.2 ENSMUSG00000057160 ENSMUST00000073088 Gm16372 processed_pseudogene Interval_159640 chr8 95958531 95958963 + 0 NA Intergenic Intergenic 37218 ENSMUSG00000110506.1 ENSMUSG00000110506 ENSMUST00000212919 Gm8637 processed_pseudogene Interval_174780 chrX 166527260 166528849 + 0 NA intron (ENSMUSG00000000402.2, intron 10 of 11) protein_coding-intron (ENSMUSG00000000402.2, intron 10 of 11) -24657 ENSMUSG00000051224.13 ENSMUSG00000051224 ENSMUST00000112187 Tceanc protein_coding Interval_65726 chr16 26104907 26106298 + 0 NA exon (ENSMUSG00000038168.5, exon 1 of 15) protein_coding-exon (ENSMUSG00000038168.5, exon 1 of 15) -64334 ENSMUSG00000090203.2 ENSMUSG00000090203 ENSMUST00000159040 AU015336 sense_intronic Interval_74288 chr17 47914303 47915917 + 0 NA intron (ENSMUSG00000023991.16, intron 1 of 2) protein_coding-intron (ENSMUSG00000023991.16, intron 1 of 16) -7268 ENSMUSG00000085932.1 ENSMUSG00000085932 ENSMUST00000122904 Gm15556 antisense Interval_27854 chr11 70400809 70401013 + 0 NA intron (ENSMUSG00000018921.11, intron 5 of 16) protein_coding-intron (ENSMUSG00000018921.11, intron 5 of 16) 9120 ENSMUSG00000018921.11 ENSMUSG00000018921 ENSMUST00000135148 Pelp1 protein_coding Interval_12914 chr10 8087611 8087953 + 0 NA Intergenic Intergenic -66490 ENSMUSG00000112360.1 ENSMUSG00000112360 ENSMUST00000218165 Gm48614 lincRNA Interval_59733 chr15 58950617 58950898 + 0 NA TTS (ENSMUSG00000022353.10) protein_coding-TTS (ENSMUSG00000022353.10) 16949 ENSMUSG00000022354.4 ENSMUSG00000022354 ENSMUST00000228595 Ndufb9 protein_coding Interval_166452 chr9 59590695 59591181 + 0 NA intron (ENSMUSG00000032297.11, intron 3 of 10) protein_coding-intron (ENSMUSG00000032297.11, intron 3 of 11) -11720 ENSMUSG00000032297.11 ENSMUSG00000032297 ENSMUST00000129728 Celf6 protein_coding Interval_35444 chr12 21829975 21832035 + 0 NA Intergenic Intergenic -54298 ENSMUSG00000091105.1 ENSMUSG00000091105 ENSMUST00000164169 Mrto4-ps2 processed_pseudogene Interval_94340 chr2 89854982 89856339 + 0 NA Intergenic Intergenic -7455 ENSMUSG00000075072.3 ENSMUSG00000075072 ENSMUST00000099762 Olfr48 protein_coding Interval_97334 chr2 134673747 134674045 + 0 NA Intergenic Intergenic -29764 ENSMUSG00000034723.11 ENSMUSG00000034723 ENSMUST00000110119 Tmx4 protein_coding Interval_146896 chr7 55598388 55599498 + 0 NA Intergenic Intergenic -37510 ENSMUSG00000108363.1 ENSMUSG00000108363 ENSMUST00000206548 Gm44615 processed_pseudogene Interval_54852 chr14 75828643 75829705 + 0 NA Intergenic Intergenic -12312 ENSMUSG00000115458.1 ENSMUSG00000115458 ENSMUST00000228454 Gm48931 processed_pseudogene Interval_114825 chr4 85931222 85931846 + 0 NA intron (ENSMUSG00000066113.16, intron 2 of 3) protein_coding-intron (ENSMUSG00000066113.16, intron 2 of 3) 21623 ENSMUSG00000088122.2 ENSMUSG00000088122 ENSMUST00000157497 Gm26069 misc_RNA Interval_20151 chr10 115288307 115289240 + 0 NA exon (ENSMUSG00000020132.10, exon 7 of 7) protein_coding-exon (ENSMUSG00000020132.10, exon 7 of 7) 18795 ENSMUSG00000111964.1 ENSMUSG00000111964 ENSMUST00000217892 Gm8942 processed_pseudogene Interval_14280 chr10 30316430 30316718 + 0 NA Intergenic Intergenic -56344 ENSMUSG00000111047.1 ENSMUSG00000111047 ENSMUST00000213206 Gm4780 transcribed_processed_pseudogene Interval_171794 chr9 121247761 121248663 + 0 NA TTS (ENSMUSG00000091336.1) processed_pseudogene-TTS (ENSMUSG00000091336.1) 895 ENSMUSG00000091336.1 ENSMUSG00000091336 ENSMUST00000172397 Gm17157 processed_pseudogene Interval_135522 chr6 39925775 39927529 + 0 NA intron (ENSMUSG00000057716.7, intron 1 of 3) protein_coding-intron (ENSMUSG00000057716.7, intron 1 of 3) -54681 ENSMUSG00000097406.1 ENSMUSG00000097406 ENSMUST00000180899 Gm26833 antisense Interval_10616 chr1 172241086 172241378 + 0 NA intron (ENSMUSG00000007107.6, intron 11 of 22) protein_coding-intron (ENSMUSG00000007107.6, intron 11 of 22) 3941 ENSMUSG00000103617.1 ENSMUSG00000103617 ENSMUST00000191616 Gm37950 antisense Interval_115731 chr4 103126306 103126679 + 0 NA intron (ENSMUSG00000028522.16, intron 1 of 5) protein_coding-intron (ENSMUSG00000028522.16, intron 2 of 13) 7102 ENSMUSG00000028522.16 ENSMUSG00000028522 ENSMUST00000128536 Mier1 protein_coding Interval_131009 chr5 134527918 134529418 + 0 NA intron (ENSMUSG00000063146.11, intron 2 of 16) protein_coding-intron (ENSMUSG00000063146.11, intron 2 of 15) -7879 ENSMUSG00000106691.1 ENSMUSG00000106691 ENSMUST00000202895 2700029L08Rik TEC Interval_16401 chr10 62739369 62740268 + 0 NA Intergenic Intergenic -14017 ENSMUSG00000036923.12 ENSMUSG00000036923 ENSMUST00000126979 Stox1 protein_coding Interval_47854 chr13 93837718 93837910 + 0 NA intron (ENSMUSG00000042082.7, intron 4 of 5) protein_coding-intron (ENSMUSG00000042082.7, intron 4 of 7) 47037 ENSMUSG00000093480.1 ENSMUSG00000093480 ENSMUST00000176635 Mir5624 miRNA Interval_136046 chr6 50305226 50305440 + 0 NA intron (ENSMUSG00000029822.15, intron 18 of 19) protein_coding-intron (ENSMUSG00000029822.15, intron 18 of 21) -43358 ENSMUSG00000029821.15 ENSMUSG00000029821 ENSMUST00000204700 Gsdme protein_coding Interval_137260 chr6 70824150 70825478 + 0 NA Intergenic Intergenic -19742 ENSMUSG00000031668.14 ENSMUSG00000031668 ENSMUST00000161316 Eif2ak3 protein_coding Interval_88771 chr2 10459462 10460023 + 0 NA intron (ENSMUSG00000061186.15, intron 10 of 22) protein_coding-intron (ENSMUSG00000061186.15, intron 9 of 22) -5545 ENSMUSG00000080500.1 ENSMUSG00000080500 ENSMUST00000116850 Gm22072 miRNA Interval_109702 chr3 146116767 146118059 + 0 NA promoter-TSS (ENSMUSG00000036853.5) protein_coding-promoter-TSS (ENSMUSG00000036853.5) -1159 ENSMUSG00000065937.1 ENSMUSG00000065937 ENSMUST00000084003 Gm25627 snRNA Interval_40486 chr12 105135269 105135674 + 0 NA TTS (ENSMUSG00000113051.1) processed_pseudogene-TTS (ENSMUSG00000113051.1) 275 ENSMUSG00000113051.1 ENSMUSG00000113051 ENSMUST00000222354 Gm47672 processed_pseudogene Interval_36648 chr12 51747030 51747550 + 0 NA intron (ENSMUSG00000035247.16, intron 38 of 42) protein_coding-intron (ENSMUSG00000035247.16, intron 38 of 42) -6948 ENSMUSG00000089346.1 ENSMUSG00000089346 ENSMUST00000158721 Gm22663 snRNA Interval_134898 chr6 33307843 33308054 + 0 NA intron (ENSMUSG00000029763.17, intron 5 of 6) protein_coding-intron (ENSMUSG00000029763.17, intron 5 of 17) -25469 ENSMUSG00000029763.17 ENSMUSG00000029763 ENSMUST00000134653 Exoc4 protein_coding Interval_33091 chr11 114345409 114346474 + 0 NA Intergenic Intergenic -11188 ENSMUSG00000081548.1 ENSMUSG00000081548 ENSMUST00000122121 Gm11692 processed_pseudogene Interval_30692 chr11 95930435 95931100 + 0 NA Intergenic Intergenic 9665 ENSMUSG00000088854.1 ENSMUSG00000088854 ENSMUST00000158229 Gm24725 snRNA Interval_38020 chr12 74009120 74009863 + 0 NA intron (ENSMUSG00000044912.11, intron 1 of 3) protein_coding-intron (ENSMUSG00000044912.11, intron 1 of 7) 45010 ENSMUSG00000021113.5 ENSMUSG00000021113 ENSMUST00000220909 Snapc1 protein_coding Interval_165222 chr9 45447072 45448218 + 0 NA intron (ENSMUSG00000032087.11, intron 1 of 32) protein_coding-intron (ENSMUSG00000032087.11, intron 1 of 32) -15915 ENSMUSG00000097074.2 ENSMUSG00000097074 ENSMUST00000215652 4833428L15Rik antisense Interval_40653 chr12 106474373 106475085 + 0 NA Intergenic Intergenic 15579 ENSMUSG00000091762.1 ENSMUSG00000091762 ENSMUST00000167139 Gm3191 processed_pseudogene Interval_7838 chr1 134060641 134061473 + 0 NA Intergenic Intergenic 18063 ENSMUSG00000020423.6 ENSMUSG00000020423 ENSMUST00000020692 Btg2 protein_coding Interval_119569 chr4 138426332 138427379 + 0 NA TTS (ENSMUSG00000083326.4) processed_pseudogene-TTS (ENSMUSG00000083326.4) 1067 ENSMUSG00000083326.4 ENSMUSG00000083326 ENSMUST00000117723 Rpl38-ps1 processed_pseudogene Interval_60115 chr15 65869099 65869811 + 0 NA TTS (ENSMUSG00000015002.18) protein_coding-TTS (ENSMUSG00000015002.18) 11586 ENSMUSG00000092495.1 ENSMUSG00000092495 ENSMUST00000174002 Gm20405 processed_transcript Interval_170893 chr9 111689595 111690754 + 0 NA promoter-TSS (ENSMUSG00000032502.8) protein_coding-promoter-TSS (ENSMUSG00000032502.8) 155 ENSMUSG00000032502.8 ENSMUSG00000032502 ENSMUST00000162345 Stac protein_coding Interval_11020 chr1 178468521 178468984 + 0 NA intron (ENSMUSG00000026495.8, intron 2 of 5) protein_coding-intron (ENSMUSG00000026495.8, intron 3 of 6) -60373 ENSMUSG00000026494.12 ENSMUSG00000026494 ENSMUST00000160789 Kif26b protein_coding Interval_125239 chr5 65590755 65591315 + 0 NA promoter-TSS (ENSMUSG00000029203.16) protein_coding-promoter-TSS (ENSMUSG00000029203.16) 405 ENSMUSG00000107102.1 ENSMUSG00000107102 ENSMUST00000202274 Gm42726 antisense Interval_119667 chr4 139098646 139098909 + 0 NA Intergenic Intergenic -6671 ENSMUSG00000041120.6 ENSMUSG00000041120 ENSMUST00000132900 Nbl1 protein_coding Interval_17806 chr10 80190349 80191117 + 0 NA TTS (ENSMUSG00000003070.6) protein_coding-TTS (ENSMUSG00000003070.6) 11251 ENSMUSG00000003070.6 ENSMUSG00000003070 ENSMUST00000003154 Efna2 protein_coding Interval_123203 chr5 30611242 30612187 + 0 NA intron (ENSMUSG00000049265.7, intron 1 of 1) protein_coding-intron (ENSMUSG00000049265.7, intron 1 of 1) -9659 ENSMUSG00000049265.7 ENSMUSG00000049265 ENSMUST00000197428 Kcnk3 protein_coding Interval_45091 chr13 52061586 52063001 + 0 NA Intergenic Intergenic 34349 ENSMUSG00000113090.1 ENSMUSG00000113090 ENSMUST00000222306 Gm48190 lincRNA Interval_172017 chr9 123523459 123523979 + 0 NA Intergenic Intergenic -6040 ENSMUSG00000025240.10 ENSMUSG00000025240 ENSMUST00000215004 Sacm1l protein_coding Interval_133514 chr6 6107039 6108799 + 0 NA intron (ENSMUSG00000015112.15, intron 11 of 17) protein_coding-intron (ENSMUSG00000015112.15, intron 11 of 17) 66032 ENSMUSG00000015112.15 ENSMUSG00000015112 ENSMUST00000177698 Slc25a13 protein_coding Interval_43728 chr13 35806714 35808160 + 0 NA intron (ENSMUSG00000059288.14, intron 5 of 5) protein_coding-intron (ENSMUSG00000059288.14, intron 4 of 9) 8687 ENSMUSG00000114555.1 ENSMUSG00000114555 ENSMUST00000224988 Gm48706 TEC Interval_87916 chr19 57090131 57091599 + 0 NA intron (ENSMUSG00000025085.16, intron 6 of 20) protein_coding-intron (ENSMUSG00000025085.16, intron 6 of 25) -153627 ENSMUSG00000025083.18 ENSMUSG00000025083 ENSMUST00000132851 Afap1l2 protein_coding Interval_50472 chr14 13862767 13863415 + 0 NA intron (ENSMUSG00000084902.2, intron 8 of 18) protein_coding-intron (ENSMUSG00000084902.2, intron 8 of 18) -5052 ENSMUSG00000087796.1 ENSMUSG00000087796 ENSMUST00000157171 Gm25964 snRNA Interval_51711 chr14 31574449 31575823 + 0 NA intron (ENSMUSG00000115022.1, intron 14 of 15) protein_coding-intron (ENSMUSG00000057606.14, intron 1 of 16) -16996 ENSMUSG00000057606.14 ENSMUSG00000057606 ENSMUST00000129238 Colq protein_coding Interval_43963 chr13 38473620 38473790 + 0 NA intron (ENSMUSG00000039004.6, intron 2 of 3) protein_coding-intron (ENSMUSG00000039004.6, intron 2 of 6) -11900 ENSMUSG00000114895.1 ENSMUSG00000114895 ENSMUST00000225893 4930579J19Rik antisense Interval_126510 chr5 89389234 89389760 + 0 NA Intergenic Intergenic 46131 ENSMUSG00000035540.12 ENSMUSG00000035540 ENSMUST00000200534 Gc protein_coding Interval_153591 chr8 3576241 3577055 + 0 NA intron (ENSMUSG00000065952.13, intron 2 of 2) protein_coding-intron (ENSMUSG00000065952.13, intron 2 of 5) 7582 ENSMUSG00000066902.7 ENSMUSG00000066902 ENSMUST00000146939 Rps23-ps2 processed_pseudogene Interval_112770 chr4 44816473 44816700 + 0 NA intron (ENSMUSG00000035649.17, intron 3 of 6) protein_coding-intron (ENSMUSG00000035649.17, intron 2 of 5) -48721 ENSMUSG00000094842.1 ENSMUSG00000094842 ENSMUST00000175591 Gm22639 miRNA Interval_106600 chr3 97628214 97629693 + 0 NA promoter-TSS (ENSMUSG00000028088.14) protein_coding-promoter-TSS (ENSMUSG00000028088.14) 70 ENSMUSG00000028088.14 ENSMUSG00000028088 ENSMUST00000140283 Fmo5 protein_coding Interval_159470 chr8 94913017 94913724 + 0 NA TTS (ENSMUSG00000063605.5) protein_coding-TTS (ENSMUSG00000063605.5) 4151 ENSMUSG00000063605.5 ENSMUSG00000063605 ENSMUST00000162020 Ccdc102a protein_coding Interval_23043 chr11 19270826 19271586 + 0 NA Intergenic Intergenic 89863 ENSMUSG00000081054.1 ENSMUSG00000081054 ENSMUST00000117768 Gm12025 processed_pseudogene Interval_30172 chr11 90115667 90116012 + 0 NA Intergenic Intergenic 27785 ENSMUSG00000085074.1 ENSMUSG00000085074 ENSMUST00000142279 Gm11494 lincRNA Interval_96253 chr2 120988472 120989259 + 0 NA intron (ENSMUSG00000054484.14, intron 7 of 11) protein_coding-intron (ENSMUSG00000054484.14, intron 7 of 13) 4495 ENSMUSG00000054484.14 ENSMUSG00000054484 ENSMUST00000135599 Tmem62 protein_coding Interval_123439 chr5 32580744 32581064 + 0 NA intron (ENSMUSG00000085234.1, intron 2 of 3) antisense-intron (ENSMUSG00000085234.1, intron 2 of 3) 30240 ENSMUSG00000106835.3 ENSMUSG00000106835 ENSMUST00000202701 Gm43812 transcribed_unprocessed_pseudogene Interval_125409 chr5 66765846 66766154 + 0 NA intron (ENSMUSG00000037736.20, intron 1 of 31) protein_coding-intron (ENSMUSG00000037736.20, intron 1 of 25) 47630 ENSMUSG00000107284.1 ENSMUSG00000107284 ENSMUST00000202958 Gm43280 TEC Interval_120965 chr4 151974104 151974385 + 0 NA TTS (ENSMUSG00000039768.16) protein_coding-TTS (ENSMUSG00000039768.16) -4740 ENSMUSG00000039768.16 ENSMUSG00000039768 ENSMUST00000124955 Dnajc11 protein_coding Interval_56308 chr14 117004618 117005305 + 0 NA intron (ENSMUSG00000058571.11, intron 1 of 9) protein_coding-intron (ENSMUSG00000058571.11, intron 1 of 8) 79430 ENSMUSG00000058571.11 ENSMUSG00000058571 ENSMUST00000078849 Gpc6 protein_coding Interval_121520 chr5 3144754 3145044 + 0 NA Intergenic Intergenic 21122 ENSMUSG00000091483.1 ENSMUSG00000091483 ENSMUST00000162728 Gm8715 unprocessed_pseudogene Interval_143213 chr7 4523997 4524851 + 0 NA promoter-TSS (ENSMUSG00000035458.15) protein_coding-promoter-TSS (ENSMUSG00000035458.15) -1997 ENSMUSG00000035458.15 ENSMUSG00000035458 ENSMUST00000150166 Tnni3 protein_coding Interval_5413 chr1 88608223 88609051 + 0 NA Intergenic Intergenic -44448 ENSMUSG00000104057.1 ENSMUSG00000104057 ENSMUST00000194311 Gm38130 TEC Interval_164018 chr9 30942034 30943561 + 0 NA promoter-TSS (ENSMUSG00000031994.13) protein_coding-promoter-TSS (ENSMUSG00000031994.13) -661 ENSMUSG00000031994.13 ENSMUSG00000031994 ENSMUST00000163037 Adamts8 protein_coding Interval_27882 chr11 70608371 70609319 + 0 NA promoter-TSS (ENSMUSG00000020827.18) protein_coding-promoter-TSS (ENSMUSG00000020827.18) 4366 ENSMUSG00000086976.1 ENSMUSG00000086976 ENSMUST00000125853 Gm12316 antisense Interval_74412 chr17 50024503 50027603 + 0 NA intron (ENSMUSG00000039316.14, intron 5 of 7) protein_coding-intron (ENSMUSG00000039316.14, intron 7 of 9) 53226 ENSMUSG00000118535.1 ENSMUSG00000118535 ENSMUST00000239097 AC133946.1 unitary_pseudogene Interval_148195 chr7 79748093 79748583 + 0 NA intron (ENSMUSG00000039099.7, intron 1 of 17) protein_coding-intron (ENSMUSG00000039099.7, intron 1 of 17) 5175 ENSMUSG00000039099.7 ENSMUSG00000039099 ENSMUST00000035622 Wdr93 protein_coding Interval_28844 chr11 78709248 78709508 + 0 NA intron (ENSMUSG00000085115.1, intron 1 of 1) processed_pseudogene-intron (ENSMUSG00000085115.1, intron 1 of 1) 383 ENSMUSG00000085115.1 ENSMUSG00000085115 ENSMUST00000145158 Gm11197 processed_pseudogene Interval_72820 chr17 32374561 32378452 + 0 NA exon (ENSMUSG00000024050.18, exon 4 of 4) protein_coding-exon (ENSMUSG00000024050.18, exon 4 of 4) 11182 ENSMUSG00000024050.18 ENSMUSG00000024050 ENSMUST00000170603 Wiz protein_coding Interval_72057 chr17 27768427 27769681 + 0 NA intron (ENSMUSG00000056692.13, intron 2 of 3) protein_coding-intron (ENSMUSG00000056692.13, intron 3 of 3) -15325 ENSMUSG00000080731.2 ENSMUSG00000080731 ENSMUST00000121414 Rps2-ps9 transcribed_processed_pseudogene Interval_34036 chr11 120136191 120136495 + 0 NA intron (ENSMUSG00000061306.16, intron 6 of 16) protein_coding-intron (ENSMUSG00000061306.16, intron 6 of 15) -14219 ENSMUSG00000085636.1 ENSMUSG00000085636 ENSMUST00000140273 Gm11769 processed_transcript Interval_58912 chr15 39934921 39935208 + 0 NA intron (ENSMUSG00000022305.13, intron 1 of 1) protein_coding-intron (ENSMUSG00000022305.13, intron 1 of 6) 8626 ENSMUSG00000022305.13 ENSMUSG00000022305 ENSMUST00000146714 Lrp12 protein_coding Interval_56296 chr14 116849372 116849560 + 0 NA Intergenic Intergenic -76065 ENSMUSG00000058571.11 ENSMUSG00000058571 ENSMUST00000078849 Gpc6 protein_coding Interval_126768 chr5 92774413 92775239 + 0 NA intron (ENSMUSG00000029381.16, intron 1 of 11) protein_coding-intron (ENSMUSG00000029381.16, intron 1 of 10) 13736 ENSMUSG00000089268.1 ENSMUSG00000089268 ENSMUST00000158643 Mir1961 miRNA Interval_28351 chr11 75331454 75331865 + 0 NA intron (ENSMUSG00000000751.13, intron 4 of 6) protein_coding-intron (ENSMUSG00000000751.13, intron 5 of 17) -13051 ENSMUSG00000106179.1 ENSMUSG00000106179 ENSMUST00000198372 Gm47300 miRNA Interval_92383 chr2 59401292 59402615 + 0 NA Intergenic Intergenic -2172 ENSMUSG00000080982.1 ENSMUSG00000080982 ENSMUST00000118339 Gm13549 processed_pseudogene Interval_130220 chr5 125028483 125029367 + 0 NA exon (ENSMUSG00000029478.16, exon 35 of 46) protein_coding-exon (ENSMUSG00000029478.16, exon 35 of 46) -3864 ENSMUSG00000029478.16 ENSMUSG00000029478 ENSMUST00000199561 Ncor2 protein_coding Interval_139687 chr6 107051727 107052515 + 0 NA Intergenic Intergenic 41994 ENSMUSG00000107981.1 ENSMUSG00000107981 ENSMUST00000203999 Gm6064 processed_pseudogene Interval_4294 chr1 72434798 72435021 + 0 NA intron (ENSMUSG00000039372.5, intron 3 of 3) protein_coding-intron (ENSMUSG00000039372.5, intron 3 of 3) -24590 ENSMUSG00000085812.1 ENSMUSG00000085812 ENSMUST00000146593 Gm15843 processed_pseudogene Interval_147998 chr7 77327836 77328076 + 0 NA Intergenic Intergenic -28960 ENSMUSG00000108611.1 ENSMUSG00000108611 ENSMUST00000207007 Gm44879 processed_pseudogene Interval_150460 chr7 110809381 110810246 + 0 NA exon (ENSMUSG00000005686.17, exon 14 of 15) protein_coding-exon (ENSMUSG00000005686.17, exon 14 of 15) 7332 ENSMUSG00000106468.1 ENSMUSG00000106468 ENSMUST00000195971 Gm47282 miRNA Interval_59095 chr15 43686605 43686951 + 0 NA Intergenic Intergenic -121683 ENSMUSG00000115407.1 ENSMUSG00000115407 ENSMUST00000226778 Gm2140 processed_pseudogene Interval_41147 chr12 111500488 111501283 + 0 NA promoter-TSS (ENSMUSG00000113029.1) antisense-promoter-TSS (ENSMUSG00000113029.1) -1263 ENSMUSG00000113029.1 ENSMUSG00000113029 ENSMUST00000220837 Gm40578 antisense Interval_140225 chr6 115669087 115669294 + 0 NA intron (ENSMUSG00000000441.17, intron 1 of 6) protein_coding-intron (ENSMUSG00000000441.17, intron 1 of 16) -6778 ENSMUSG00000107994.1 ENSMUSG00000107994 ENSMUST00000203121 D830050J10Rik bidirectional_promoter_lncRNA Interval_156537 chr8 50103811 50104110 + 0 NA Intergenic Intergenic -90576 ENSMUSG00000110375.1 ENSMUSG00000110375 ENSMUST00000209853 Gm45323 lincRNA Interval_68532 chr16 78436449 78436800 + 0 NA Intergenic Intergenic -12765 ENSMUSG00000064862.1 ENSMUSG00000064862 ENSMUST00000082928 Gm25038 snoRNA Interval_121842 chr5 8764069 8764430 + 0 NA Intergenic Intergenic -28481 ENSMUSG00000104535.1 ENSMUSG00000104535 ENSMUST00000199172 Gm42686 TEC Interval_118988 chr4 134871577 134872447 + 0 NA intron (ENSMUSG00000028825.7, intron 1 of 9) protein_coding-intron (ENSMUSG00000028825.7, intron 1 of 9) -7798 ENSMUSG00000028825.7 ENSMUSG00000028825 ENSMUST00000136163 Rhd protein_coding Interval_64539 chr16 13158382 13158749 + 0 NA Intergenic Intergenic 26174 ENSMUSG00000022545.13 ENSMUSG00000022545 ENSMUST00000156393 Ercc4 protein_coding Interval_117185 chr4 120332963 120333203 + 0 NA Intergenic Intergenic 41733 ENSMUSG00000084929.1 ENSMUSG00000084929 ENSMUST00000152384 Foxo6os antisense Interval_31278 chr11 99294315 99294656 + 0 NA Intergenic Intergenic -9223 ENSMUSG00000020913.3 ENSMUSG00000020913 ENSMUST00000017255 Krt24 protein_coding Interval_83301 chr18 83957272 83957533 + 0 NA Intergenic Intergenic -30593 ENSMUSG00000117894.1 ENSMUSG00000117894 ENSMUST00000238017 Gm50421 processed_pseudogene Interval_69311 chr16 92120980 92121934 + 0 NA intron (ENSMUSG00000116930.1, intron 2 of 3) protein_coding-intron (ENSMUSG00000116930.1, intron 2 of 3) -4831 ENSMUSG00000116747.1 ENSMUSG00000116747 ENSMUST00000231220 Gm41496 lincRNA Interval_16826 chr10 68723564 68724745 + 0 NA intron (ENSMUSG00000060044.8, intron 1 of 6) protein_coding-intron (ENSMUSG00000060044.8, intron 1 of 5) 508 ENSMUSG00000060044.8 ENSMUSG00000060044 ENSMUST00000218918 Tmem26 protein_coding Interval_142704 chr6 145065085 145066419 + 0 NA intron (ENSMUSG00000030268.17, intron 1 of 10) protein_coding-intron (ENSMUSG00000030268.17, intron 1 of 9) 9363 ENSMUSG00000086643.1 ENSMUSG00000086643 ENSMUST00000141440 Gm15687 antisense Interval_29258 chr11 82386808 82390091 + 0 NA promoter-TSS (ENSMUSG00000020701.12) protein_coding-promoter-TSS (ENSMUSG00000020701.12) -1109 ENSMUSG00000113710.1 ENSMUSG00000113710 ENSMUST00000221531 Gm38577 lincRNA Interval_7984 chr1 135058150 135058660 + 0 NA intron (ENSMUSG00000042793.13, intron 4 of 17) protein_coding-intron (ENSMUSG00000042793.13, intron 4 of 17) -36314 ENSMUSG00000042793.13 ENSMUSG00000042793 ENSMUST00000139369 Lgr6 protein_coding Interval_6820 chr1 119882958 119883556 + 0 NA Intergenic Intergenic 8476 ENSMUSG00000100042.1 ENSMUSG00000100042 ENSMUST00000185404 Gm29658 processed_pseudogene Interval_36531 chr12 48662189 48662558 + 0 NA Intergenic Intergenic 30080 ENSMUSG00000112005.1 ENSMUSG00000112005 ENSMUST00000218070 Gm29818 processed_pseudogene Interval_100632 chr2 170618966 170619347 + 0 NA Intergenic Intergenic -17139 ENSMUSG00000043583.1 ENSMUSG00000043583 ENSMUST00000062355 4930470P17Rik protein_coding Interval_55790 chr14 100195115 100195613 + 0 NA intron (ENSMUSG00000072294.5, intron 1 of 7) protein_coding-intron (ENSMUSG00000072294.5, intron 1 of 3) -17825 ENSMUSG00000054391.12 ENSMUSG00000054391 ENSMUST00000145018 4930517O19Rik antisense Interval_71864 chr17 26600958 26601454 + 0 NA promoter-TSS (ENSMUSG00000001576.15) protein_coding-promoter-TSS (ENSMUSG00000001576.15) -1018 ENSMUSG00000001576.15 ENSMUSG00000001576 ENSMUST00000236163 Ergic1 protein_coding Interval_80523 chr18 43321758 43322610 + 0 NA exon (ENSMUSG00000024501.20, exon 14 of 14) protein_coding-exon (ENSMUSG00000024501.20, exon 14 of 14) 51039 ENSMUSG00000024501.20 ENSMUSG00000024501 ENSMUST00000118071 Dpysl3 protein_coding Interval_27733 chr11 69723069 69723563 + 0 NA Intergenic Intergenic 7268 ENSMUSG00000081333.1 ENSMUSG00000081333 ENSMUST00000120581 Gm12307 processed_pseudogene Interval_108603 chr3 129524091 129524420 + 0 NA Intergenic Intergenic -8100 ENSMUSG00000041220.10 ENSMUSG00000041220 ENSMUST00000198369 Elovl6 protein_coding Interval_139117 chr6 95484332 95485553 + 0 NA intron (ENSMUSG00000061838.7, intron 10 of 10) protein_coding-intron (ENSMUSG00000061838.7, intron 10 of 10) -150965 ENSMUSG00000068180.13 ENSMUSG00000068180 ENSMUST00000171594 AY512915 lincRNA Interval_109784 chr3 146948752 146949008 + 0 NA intron (ENSMUSG00000036745.15, intron 3 of 5) protein_coding-intron (ENSMUSG00000036745.15, intron 19 of 21) 4960 ENSMUSG00000036745.15 ENSMUSG00000036745 ENSMUST00000197547 Ttll7 protein_coding Interval_154499 chr8 18701759 18702275 + 0 NA intron (ENSMUSG00000031465.6, intron 5 of 8) protein_coding-intron (ENSMUSG00000031465.6, intron 5 of 8) -2470 ENSMUSG00000031465.6 ENSMUSG00000031465 ENSMUST00000170200 Angpt2 protein_coding Interval_2792 chr1 45268363 45269036 + 0 NA Intergenic Intergenic -42974 ENSMUSG00000105211.1 ENSMUSG00000105211 ENSMUST00000198698 Gm47302 miRNA Interval_163401 chr9 21264513 21265907 + 0 NA promoter-TSS (ENSMUSG00000002820.6) protein_coding-promoter-TSS (ENSMUSG00000002820.6) -2868 ENSMUSG00000002820.6 ENSMUSG00000002820 ENSMUST00000217591 Atg4d protein_coding Interval_1860 chr1 34179622 34179972 + 0 NA exon (ENSMUSG00000026131.20, exon 23 of 24) protein_coding-exon (ENSMUSG00000026131.20, exon 23 of 24) -1351 ENSMUSG00000096992.3 ENSMUSG00000096992 ENSMUST00000187268 Gm26788 processed_transcript Interval_68088 chr16 64917967 64919028 + 0 NA promoter-TSS (ENSMUSG00000093149.1) miRNA-promoter-TSS (ENSMUSG00000093149.1) -192 ENSMUSG00000093149.1 ENSMUSG00000093149 ENSMUST00000175408 Gm23374 miRNA Interval_10086 chr1 165702576 165703114 + 0 NA intron (ENSMUSG00000040723.14, intron 2 of 2) protein_coding-intron (ENSMUSG00000040723.14, intron 1 of 6) 6912 ENSMUSG00000040723.14 ENSMUSG00000040723 ENSMUST00000195045 Rcsd1 protein_coding Interval_43145 chr13 24679412 24679833 + 0 NA intron (ENSMUSG00000036006.20, intron 7 of 13) protein_coding-intron (ENSMUSG00000036006.20, intron 7 of 14) -61610 ENSMUSG00000085861.1 ENSMUSG00000085861 ENSMUST00000136906 Armh2 protein_coding Interval_5608 chr1 90189941 90190918 + 0 NA Intergenic Intergenic -13577 ENSMUSG00000044337.5 ENSMUSG00000044337 ENSMUST00000159654 Ackr3 protein_coding Interval_112388 chr4 41000329 41001497 + 0 NA intron (ENSMUSG00000028423.15, intron 11 of 23) protein_coding-intron (ENSMUSG00000028423.15, intron 11 of 15) -1597 ENSMUSG00000028423.15 ENSMUSG00000028423 ENSMUST00000131305 Nfx1 protein_coding Interval_58959 chr15 40924003 40924219 + 0 NA intron (ENSMUSG00000022306.9, intron 4 of 7) protein_coding-intron (ENSMUSG00000022306.9, intron 4 of 7) 16546 ENSMUSG00000116397.1 ENSMUSG00000116397 ENSMUST00000230162 Gm49525 TEC Interval_88633 chr2 7962440 7962692 + 0 NA Intergenic Intergenic -181158 ENSMUSG00000085070.1 ENSMUSG00000085070 ENSMUST00000141649 Gm13211 lincRNA Interval_27385 chr11 67152057 67152243 + 0 NA Intergenic Intergenic -18877 ENSMUSG00000033196.17 ENSMUSG00000033196 ENSMUST00000018641 Myh2 protein_coding Interval_57751 chr15 18533785 18534660 + 0 NA Intergenic Intergenic 54886 ENSMUSG00000115766.1 ENSMUSG00000115766 ENSMUST00000226709 Gm49139 processed_pseudogene Interval_127964 chr5 109896823 109897094 + 0 NA Intergenic Intergenic 10727 ENSMUSG00000097140.1 ENSMUSG00000097140 ENSMUST00000181101 Gm26779 lincRNA Interval_116966 chr4 118508944 118509802 + 0 NA Intergenic Intergenic -11731 ENSMUSG00000080857.1 ENSMUSG00000080857 ENSMUST00000117834 Gm12859 processed_pseudogene Interval_28176 chr11 73503835 73504150 + 0 NA Intergenic Intergenic -12514 ENSMUSG00000072708.3 ENSMUSG00000072708 ENSMUST00000119863 Olfr381 protein_coding Interval_42078 chr13 8107463 8107742 + 0 NA Intergenic Intergenic -20531 ENSMUSG00000113412.1 ENSMUSG00000113412 ENSMUST00000222882 Gm5191 processed_pseudogene Interval_112462 chr4 41390119 41390697 + 0 NA TTS (ENSMUSG00000028438.16) protein_coding-TTS (ENSMUSG00000028438.16) 19160 ENSMUSG00000028437.14 ENSMUSG00000028437 ENSMUST00000132235 Ubap1 protein_coding Interval_113605 chr4 56946310 56947655 + 0 NA exon (ENSMUSG00000055296.14, exon 1 of 18) protein_coding-exon (ENSMUSG00000055296.14, exon 1 of 18) 442 ENSMUSG00000055296.14 ENSMUSG00000055296 ENSMUST00000155625 Tmem245 protein_coding Interval_166958 chr9 64140540 64141099 + 0 NA intron (ENSMUSG00000032400.18, intron 1 of 2) protein_coding-intron (ENSMUSG00000032400.18, intron 17 of 18) 23647 ENSMUSG00000032401.15 ENSMUSG00000032401 ENSMUST00000132018 Lctl protein_coding Interval_133083 chr5 149704752 149705034 + 0 NA intron (ENSMUSG00000051950.10, intron 3 of 14) protein_coding-intron (ENSMUSG00000051950.10, intron 3 of 14) -34639 ENSMUSG00000051950.10 ENSMUSG00000051950 ENSMUST00000201088 B3glct protein_coding Interval_117834 chr4 126502826 126503419 + 0 NA intron (ENSMUSG00000042500.11, intron 15 of 17) protein_coding-intron (ENSMUSG00000042500.11, intron 15 of 17) 13790 ENSMUSG00000042500.11 ENSMUSG00000042500 ENSMUST00000122951 Ago4 protein_coding Interval_144565 chr7 25988214 25988604 + 0 NA TTS (ENSMUSG00000108589.1) unprocessed_pseudogene-TTS (ENSMUSG00000108589.1) 6907 ENSMUSG00000108589.1 ENSMUSG00000108589 ENSMUST00000206852 Gm45225 unprocessed_pseudogene Interval_38274 chr12 76852946 76854317 + 0 NA intron (ENSMUSG00000033373.16, intron 1 of 4) protein_coding-intron (ENSMUSG00000033373.16, intron 1 of 11) -30723 ENSMUSG00000021062.15 ENSMUSG00000021062 ENSMUST00000134124 Rab15 protein_coding Interval_28519 chr11 76467172 76468815 + 0 NA intron (ENSMUSG00000017631.19, intron 6 of 22) protein_coding-intron (ENSMUSG00000017631.19, intron 1 of 17) -46076 ENSMUSG00000080763.2 ENSMUSG00000080763 ENSMUST00000119724 Gm12341 processed_pseudogene Interval_75675 chr17 70555527 70555764 + 0 NA intron (ENSMUSG00000003279.17, intron 1 of 2) protein_coding-intron (ENSMUSG00000003279.17, intron 6 of 14) 199937 ENSMUSG00000097282.1 ENSMUSG00000097282 ENSMUST00000181546 5031415H12Rik antisense Interval_169957 chr9 103207681 103208453 + 0 NA TTS (ENSMUSG00000032554.15) protein_coding-TTS (ENSMUSG00000032554.15) 3939 ENSMUSG00000032554.15 ENSMUSG00000032554 ENSMUST00000126359 Trf protein_coding Interval_58706 chr15 37238218 37239061 + 0 NA intron (ENSMUSG00000022286.16, intron 1 of 9) protein_coding-intron (ENSMUSG00000022286.16, intron 1 of 15) 4523 ENSMUSG00000089949.2 ENSMUSG00000089949 ENSMUST00000161571 Gm16137 antisense Interval_82607 chr18 75405123 75405937 + 0 NA Intergenic Intergenic 36540 ENSMUSG00000025880.11 ENSMUSG00000025880 ENSMUST00000172718 Smad7 protein_coding Interval_74597 chr17 53611120 53611448 + 0 NA intron (ENSMUSG00000000708.14, intron 2 of 5) protein_coding-intron (ENSMUSG00000000708.14, intron 2 of 17) -12621 ENSMUSG00000096517.1 ENSMUSG00000096517 ENSMUST00000180049 Gm6919 processed_pseudogene Interval_119759 chr4 139747201 139747844 + 0 NA intron (ENSMUSG00000028736.13, intron 8 of 8) protein_coding-intron (ENSMUSG00000028736.13, intron 8 of 8) 85485 ENSMUSG00000028736.13 ENSMUSG00000028736 ENSMUST00000174681 Pax7 protein_coding Interval_12507 chr1 194607699 194607978 + 0 NA Intergenic Intergenic -10380 ENSMUSG00000026640.12 ENSMUSG00000026640 ENSMUST00000124785 Plxna2 protein_coding Interval_90481 chr2 30721853 30722263 + 0 NA TTS (ENSMUSG00000093091.1) miRNA-TTS (ENSMUSG00000093091.1) 848 ENSMUSG00000093091.1 ENSMUSG00000093091 ENSMUST00000175350 Mir3089 miRNA Interval_58576 chr15 36282198 36283728 + 0 NA exon (ENSMUSG00000022280.9, exon 1 of 10) protein_coding-exon (ENSMUSG00000022280.9, exon 1 of 10) 135 ENSMUSG00000022280.9 ENSMUSG00000022280 ENSMUST00000227735 Rnf19a protein_coding Interval_23983 chr11 29180094 29180367 + 0 NA intron (ENSMUSG00000020463.15, intron 2 of 3) protein_coding-intron (ENSMUSG00000020463.15, intron 2 of 15) 6483 ENSMUSG00000020463.15 ENSMUSG00000020463 ENSMUST00000148759 Ppp4r3b protein_coding Interval_121286 chr4 154728049 154728249 + 0 NA Intergenic Intergenic -60282 ENSMUSG00000051276.4 ENSMUSG00000051276 ENSMUST00000060062 Actrt2 protein_coding Interval_21361 chr10 128158352 128158756 + 0 NA intron (ENSMUSG00000040043.17, intron 2 of 14) protein_coding-intron (ENSMUSG00000040043.17, intron 1 of 12) 21743 ENSMUSG00000040043.17 ENSMUSG00000040043 ENSMUST00000218884 Rbms2 protein_coding Interval_145862 chr7 40773845 40774051 + 0 NA Intergenic Intergenic 47162 ENSMUSG00000108672.1 ENSMUSG00000108672 ENSMUST00000206420 Gm45008 TEC Interval_90948 chr2 33647585 33647892 + 0 NA Intergenic Intergenic 5060 ENSMUSG00000081244.3 ENSMUSG00000081244 ENSMUST00000121118 Gm13529 processed_pseudogene Interval_78973 chr18 23437356 23437919 + 0 NA intron (ENSMUSG00000024302.16, intron 1 of 17) protein_coding-intron (ENSMUSG00000024302.16, intron 1 of 11) -59198 ENSMUSG00000024302.16 ENSMUSG00000024302 ENSMUST00000222726 Dtna protein_coding Interval_102895 chr3 32610089 32611227 + 0 NA promoter-TSS (ENSMUSG00000102862.1) antisense-promoter-TSS (ENSMUSG00000102862.1) -203 ENSMUSG00000102862.1 ENSMUSG00000102862 ENSMUST00000195407 Gm37640 antisense Interval_115687 chr4 102140581 102140809 + 0 NA intron (ENSMUSG00000028525.16, intron 1 of 6) protein_coding-intron (ENSMUSG00000028525.16, intron 1 of 16) -91568 ENSMUSG00000082264.1 ENSMUSG00000082264 ENSMUST00000118151 Gm12799 processed_pseudogene Interval_101649 chr3 8526784 8527920 + 0 NA intron (ENSMUSG00000027500.10, intron 1 of 1) protein_coding-intron (ENSMUSG00000027500.10, intron 1 of 4) 17766 ENSMUSG00000027500.10 ENSMUSG00000027500 ENSMUST00000194307 Stmn2 protein_coding Interval_23941 chr11 28643233 28643467 + 0 NA Intergenic Intergenic -38214 ENSMUSG00000084966.1 ENSMUSG00000084966 ENSMUST00000146554 2810471M01Rik lincRNA Interval_77052 chr17 86063417 86064129 + 0 NA intron (ENSMUSG00000024135.10, intron 6 of 6) protein_coding-intron (ENSMUSG00000024135.10, intron 14 of 20) -23409 ENSMUSG00000024135.10 ENSMUSG00000024135 ENSMUST00000234595 Srbd1 protein_coding Interval_130394 chr5 127277392 127278436 + 0 NA intron (ENSMUSG00000087104.7, intron 1 of 3) protein_coding-intron (ENSMUSG00000034324.16, intron 1 of 8) 3680 ENSMUSG00000087104.7 ENSMUSG00000087104 ENSMUST00000154361 Tmem132cos antisense Interval_17575 chr10 77864202 77864948 + 0 NA promoter-TSS (ENSMUSG00000069581.12) protein_coding-promoter-TSS (ENSMUSG00000069581.12) -7 ENSMUSG00000069581.12 ENSMUSG00000069581 ENSMUST00000092368 Tspear protein_coding Interval_93604 chr2 74762581 74764089 + 0 NA promoter-TSS (ENSMUSG00000075277.5) bidirectional_promoter_lncRNA-promoter-TSS (ENSMUSG00000075277.5) 355 ENSMUSG00000042448.5 ENSMUSG00000042448 ENSMUST00000047793 Hoxd1 protein_coding Interval_172260 chrX 12069027 12069877 + 0 NA intron (ENSMUSG00000040363.15, intron 1 of 13) protein_coding-intron (ENSMUSG00000040363.15, intron 1 of 13) 84984 ENSMUSG00000081947.2 ENSMUSG00000081947 ENSMUST00000117924 Gm14512 processed_pseudogene Interval_152221 chr7 130733498 130733946 + 0 NA intron (ENSMUSG00000030852.18, intron 4 of 6) protein_coding-intron (ENSMUSG00000030852.18, intron 5 of 17) 20045 ENSMUSG00000030852.18 ENSMUSG00000030852 ENSMUST00000207230 Tacc2 protein_coding Interval_68552 chr16 78595001 78596334 + 0 NA Intergenic Intergenic -19033 ENSMUSG00000022864.14 ENSMUSG00000022864 ENSMUST00000232329 D16Ertd472e protein_coding Interval_73902 chr17 45396909 45398218 + 0 NA intron (ENSMUSG00000023932.9, intron 14 of 15) protein_coding-intron (ENSMUSG00000023932.9, intron 14 of 15) 35978 ENSMUSG00000023932.9 ENSMUSG00000023932 ENSMUST00000232910 Cdc5l protein_coding Interval_153152 chr7 141680417 141680694 + 0 NA Intergenic Intergenic -23610 ENSMUSG00000025515.15 ENSMUSG00000025515 ENSMUST00000026590 Muc2 protein_coding Interval_145438 chr7 34753190 34753384 + 0 NA exon (ENSMUSG00000060402.8, exon 1 of 4) protein_coding-exon (ENSMUSG00000060402.8, exon 1 of 4) 525 ENSMUSG00000060402.8 ENSMUSG00000060402 ENSMUST00000205390 Chst8 protein_coding Interval_39989 chr12 100278079 100278969 + 0 NA intron (ENSMUSG00000113679.1, intron 1 of 3) processed_transcript-intron (ENSMUSG00000113679.1, intron 1 of 3) -11732 ENSMUSG00000113679.1 ENSMUSG00000113679 ENSMUST00000220721 Gm10432 processed_transcript Interval_107016 chr3 102982884 102983547 + 0 NA Intergenic Intergenic -12961 ENSMUSG00000027854.12 ENSMUSG00000027854 ENSMUST00000196827 Sike1 protein_coding Interval_113041 chr4 47152531 47152801 + 0 NA Intergenic Intergenic -19003 ENSMUSG00000083491.1 ENSMUSG00000083491 ENSMUST00000118334 Gm12423 processed_pseudogene Interval_135210 chr6 37563269 37564647 + 0 NA intron (ENSMUSG00000038641.12, intron 7 of 8) protein_coding-intron (ENSMUSG00000038641.12, intron 7 of 8) 22544 ENSMUSG00000106889.1 ENSMUSG00000106889 ENSMUST00000201541 Gm7463 processed_pseudogene Interval_108053 chr3 121132370 121132604 + 0 NA Intergenic Intergenic -36169 ENSMUSG00000106329.1 ENSMUSG00000106329 ENSMUST00000199790 Gm10652 TEC Interval_163830 chr9 26991347 26991816 + 0 NA promoter-TSS (ENSMUSG00000031969.16) protein_coding-promoter-TSS (ENSMUSG00000031969.16) 7890 ENSMUSG00000031969.16 ENSMUSG00000031969 ENSMUST00000138102 Acad8 protein_coding Interval_82167 chr18 68244217 68244903 + 0 NA intron (ENSMUSG00000024544.9, intron 2 of 5) protein_coding-intron (ENSMUSG00000024544.9, intron 4 of 5) 16413 ENSMUSG00000098253.1 ENSMUSG00000098253 ENSMUST00000184508 Mir7219 miRNA Interval_77087 chr17 86434228 86435019 + 0 NA intron (ENSMUSG00000045038.14, intron 2 of 14) protein_coding-intron (ENSMUSG00000045038.14, intron 3 of 15) -55939 ENSMUSG00000045038.14 ENSMUSG00000045038 ENSMUST00000136986 Prkce protein_coding Interval_43971 chr13 38554506 38555052 + 0 NA promoter-TSS (ENSMUSG00000114866.1) lincRNA-promoter-TSS (ENSMUSG00000114866.1) -86 ENSMUSG00000114866.1 ENSMUSG00000114866 ENSMUST00000225387 Gm40922 lincRNA Interval_170280 chr9 106647378 106647870 + 0 NA exon (ENSMUSG00000023192.12, exon 4 of 6) protein_coding-exon (ENSMUSG00000023192.12, exon 4 of 6) -1011 ENSMUSG00000023192.12 ENSMUSG00000023192 ENSMUST00000201955 Grm2 protein_coding Interval_75742 chr17 70970964 70971878 + 0 NA exon (ENSMUSG00000117079.1, exon 2 of 2) lincRNA-exon (ENSMUSG00000117079.1, exon 2 of 2) 3535 ENSMUSG00000117079.1 ENSMUSG00000117079 ENSMUST00000233521 Gm41611 lincRNA Interval_169725 chr9 100710493 100710804 + 0 NA intron (ENSMUSG00000037286.15, intron 2 of 8) protein_coding-intron (ENSMUSG00000037286.15, intron 2 of 32) 7435 ENSMUSG00000104272.1 ENSMUSG00000104272 ENSMUST00000195122 Gm38297 TEC Interval_11091 chr1 179276661 179278676 + 0 NA intron (ENSMUSG00000055067.15, intron 5 of 11) protein_coding-intron (ENSMUSG00000055067.15, intron 5 of 11) 240337 ENSMUSG00000055067.15 ENSMUSG00000055067 ENSMUST00000194237 Smyd3 protein_coding Interval_136171 chr6 51702487 51702697 + 0 NA intron (ENSMUSG00000108145.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000108145.1, intron 1 of 1) 8489 ENSMUSG00000108145.1 ENSMUSG00000108145 ENSMUST00000203781 Gm38811 lincRNA Interval_5954 chr1 93487363 93487660 + 0 NA intron (ENSMUSG00000026276.20, intron 2 of 5) protein_coding-intron (ENSMUSG00000026276.20, intron 1 of 12) 8452 ENSMUSG00000026276.20 ENSMUSG00000026276 ENSMUST00000157021 Septin2 protein_coding Interval_40591 chr12 105876647 105877357 + 0 NA Intergenic Intergenic -11209 ENSMUSG00000093331.1 ENSMUSG00000093331 ENSMUST00000175590 Gm22120 miRNA Interval_54304 chr14 67438446 67438699 + 0 NA Intergenic Intergenic -1401 ENSMUSG00000093634.1 ENSMUSG00000093634 ENSMUST00000176934 Gm10860 antisense Interval_24432 chr11 33211268 33211628 + 0 NA TTS (ENSMUSG00000040594.19) protein_coding-TTS (ENSMUSG00000040594.19) 7393 ENSMUSG00000087501.1 ENSMUSG00000087501 ENSMUST00000131851 Gm12116 lincRNA Interval_134044 chr6 17989656 17990355 + 0 NA exon (ENSMUSG00000010797.6, exon 5 of 5) protein_coding-exon (ENSMUSG00000010797.6, exon 5 of 5) 40580 ENSMUSG00000010797.6 ENSMUSG00000010797 ENSMUST00000010941 Wnt2 protein_coding Interval_137085 chr6 67243479 67244601 + 0 NA intron (ENSMUSG00000036371.6, intron 1 of 2) protein_coding-intron (ENSMUSG00000036371.6, intron 1 of 2) -4330 ENSMUSG00000107799.1 ENSMUSG00000107799 ENSMUST00000204022 Gm38825 antisense Interval_2746 chr1 44110226 44110650 + 0 NA promoter-TSS (ENSMUSG00000101104.6) processed_transcript-promoter-TSS (ENSMUSG00000101104.6) -393 ENSMUSG00000101104.6 ENSMUSG00000101104 ENSMUST00000134195 Gm29247 processed_transcript Interval_161450 chr8 120525820 120526215 + 0 NA intron (ENSMUSG00000031822.20, intron 1 of 15) protein_coding-intron (ENSMUSG00000031822.20, intron 1 of 15) 5402 ENSMUSG00000097983.1 ENSMUSG00000097983 ENSMUST00000182423 Gm26971 sense_intronic Interval_5154 chr1 86080903 86081324 + 0 NA intron (ENSMUSG00000026229.17, intron 6 of 20) protein_coding-intron (ENSMUSG00000026229.17, intron 7 of 24) -6188 ENSMUSG00000077274.1 ENSMUSG00000077274 ENSMUST00000104086 Gm22786 snoRNA Interval_146608 chr7 47856409 47857081 + 0 NA Intergenic Intergenic 15362 ENSMUSG00000101622.1 ENSMUSG00000101622 ENSMUST00000188059 Mrgpra18-ps unprocessed_pseudogene Interval_84520 chr19 12112596 12112795 + 0 NA intron (ENSMUSG00000067524.4, intron 1 of 2) protein_coding-intron (ENSMUSG00000067524.4, intron 1 of 3) 3202 ENSMUSG00000067524.4 ENSMUSG00000067524 ENSMUST00000087824 Olfr1428 protein_coding Interval_119906 chr4 140813742 140814818 + 0 NA exon (ENSMUSG00000025329.3, exon 16 of 16) protein_coding-exon (ENSMUSG00000025329.3, exon 16 of 16) 3287 ENSMUSG00000085918.1 ENSMUSG00000085918 ENSMUST00000151848 Gm13032 processed_transcript Interval_47159 chr13 76704757 76704973 + 0 NA intron (ENSMUSG00000021596.16, intron 3 of 7) protein_coding-intron (ENSMUSG00000021596.16, intron 3 of 20) 8246 ENSMUSG00000090027.1 ENSMUSG00000090027 ENSMUST00000159703 Gm15740 processed_pseudogene Interval_100213 chr2 167687716 167690133 + 0 NA promoter-TSS (ENSMUSG00000056501.3) protein_coding-promoter-TSS (ENSMUSG00000056501.3) 9 ENSMUSG00000056501.3 ENSMUSG00000056501 ENSMUST00000070642 Cebpb protein_coding Interval_76531 chr17 80800007 80802913 + 0 NA Intergenic Intergenic 73329 ENSMUSG00000054957.5 ENSMUSG00000054957 ENSMUST00000068277 Gm9959 pseudogene Interval_41856 chr13 3567768 3568713 + 0 NA promoter-TSS (ENSMUSG00000033799.10) protein_coding-promoter-TSS (ENSMUSG00000033799.10) 5855 ENSMUSG00000113894.1 ENSMUSG00000113894 ENSMUST00000223046 Gm48838 TEC Interval_101175 chr2 178856474 178856961 + 0 NA Intergenic Intergenic 164416 ENSMUSG00000082215.3 ENSMUSG00000082215 ENSMUST00000118225 Gm14314 processed_pseudogene Interval_11981 chr1 188259054 188259390 + 0 NA Intergenic Intergenic -2801 ENSMUSG00000026609.15 ENSMUSG00000026609 ENSMUST00000127077 Ush2a protein_coding Interval_76713 chr17 83651424 83651671 + 0 NA Intergenic Intergenic -19652 ENSMUSG00000045053.2 ENSMUSG00000045053 ENSMUST00000051482 Kcng3 protein_coding Interval_93530 chr2 73859739 73860899 + 0 NA intron (ENSMUSG00000027104.18, intron 1 of 11) protein_coding-intron (ENSMUSG00000027104.18, intron 4 of 13) 2919 ENSMUSG00000027104.18 ENSMUSG00000027104 ENSMUST00000154965 Atf2 protein_coding Interval_160661 chr8 111418702 111419586 + 0 NA TTS (ENSMUSG00000077477.1) snoRNA-TTS (ENSMUSG00000077477.1) 412 ENSMUSG00000077477.1 ENSMUSG00000077477 ENSMUST00000104289 Gm24793 snoRNA Interval_66262 chr16 32707255 32709015 + 0 NA Intergenic Intergenic -18531 ENSMUSG00000098225.1 ENSMUSG00000098225 ENSMUST00000182938 Gm9556 processed_pseudogene Interval_102292 chr3 20814855 20815876 + 0 NA Intergenic Intergenic -4256 ENSMUSG00000102807.1 ENSMUSG00000102807 ENSMUST00000194795 Gm37480 TEC Interval_71360 chr17 22674035 22674630 + 0 NA Intergenic Intergenic -13388 ENSMUSG00000117055.1 ENSMUSG00000117055 ENSMUST00000233199 Gm9805 processed_pseudogene Interval_28198 chr11 74195975 74196430 + 0 NA exon (ENSMUSG00000070378.3, exon 1 of 1) protein_coding-exon (ENSMUSG00000070378.3, exon 1 of 1) 9929 ENSMUSG00000070378.3 ENSMUSG00000070378 ENSMUST00000076675 Olfr403 protein_coding Interval_64126 chr16 8573024 8575318 + 0 NA intron (ENSMUSG00000057880.12, intron 2 of 2) protein_coding-intron (ENSMUSG00000057880.12, intron 2 of 15) -9456 ENSMUSG00000057880.12 ENSMUSG00000057880 ENSMUST00000128459 Abat protein_coding Interval_18276 chr10 84519911 84520383 + 0 NA intron (ENSMUSG00000111514.1, intron 1 of 3) lincRNA-intron (ENSMUSG00000111514.1, intron 1 of 3) 2102 ENSMUSG00000111514.1 ENSMUSG00000111514 ENSMUST00000215920 E230014E18Rik lincRNA Interval_107356 chr3 106547159 106548527 + 0 NA promoter-TSS (ENSMUSG00000027900.15) protein_coding-promoter-TSS (ENSMUSG00000027900.15) -38 ENSMUSG00000027900.15 ENSMUSG00000027900 ENSMUST00000151465 Dram2 protein_coding Interval_5825 chr1 92250724 92251849 + 0 NA Intergenic Intergenic -55592 ENSMUSG00000026313.16 ENSMUSG00000026313 ENSMUST00000212408 Hdac4 protein_coding Interval_114075 chr4 63147204 63147643 + 0 NA intron (ENSMUSG00000028356.4, intron 6 of 9) protein_coding-intron (ENSMUSG00000028356.4, intron 6 of 9) 7376 ENSMUSG00000028356.4 ENSMUSG00000028356 ENSMUST00000142901 Ambp protein_coding Interval_58552 chr15 36023223 36023678 + 0 NA intron (ENSMUSG00000037627.16, intron 2 of 6) protein_coding-intron (ENSMUSG00000037627.16, intron 22 of 27) -5448 ENSMUSG00000088786.1 ENSMUSG00000088786 ENSMUST00000158161 Gm25372 misc_RNA Interval_113371 chr4 53882690 53883560 + 0 NA Intergenic Intergenic 5200 ENSMUSG00000083985.3 ENSMUSG00000083985 ENSMUST00000116189 Gm12468 processed_pseudogene Interval_66897 chr16 38399338 38401146 + 0 NA intron (ENSMUSG00000002847.7, intron 9 of 10) protein_coding-intron (ENSMUSG00000002847.7, intron 9 of 10) 17552 ENSMUSG00000002847.7 ENSMUSG00000002847 ENSMUST00000232224 Pla1a protein_coding Interval_6946 chr1 121189061 121189318 + 0 NA Intergenic Intergenic -35087 ENSMUSG00000101700.1 ENSMUSG00000101700 ENSMUST00000191007 Gm29359 lincRNA Interval_21995 chr11 5650104 5650885 + 0 NA intron (ENSMUSG00000020481.15, intron 25 of 25) protein_coding-intron (ENSMUSG00000020481.15, intron 23 of 26) 16355 ENSMUSG00000081021.1 ENSMUSG00000081021 ENSMUST00000120982 Gm11964 processed_pseudogene Interval_151381 chr7 121974801 121975432 + 0 NA intron (ENSMUSG00000034951.10, intron 3 of 16) protein_coding-intron (ENSMUSG00000034951.10, intron 3 of 16) -6645 ENSMUSG00000108511.1 ENSMUSG00000108511 ENSMUST00000206578 Gm44987 antisense Interval_13320 chr10 14759572 14760898 + 0 NA promoter-TSS (ENSMUSG00000019865.9) protein_coding-promoter-TSS (ENSMUSG00000019865.9) 485 ENSMUSG00000096963.1 ENSMUSG00000096963 ENSMUST00000181479 B230364G03Rik antisense Interval_17385 chr10 76245310 76245777 + 0 NA Intergenic Intergenic -8310 ENSMUSG00000033208.7 ENSMUSG00000033208 ENSMUST00000036387 S100b protein_coding Interval_59396 chr15 52144834 52145041 + 0 NA Intergenic Intergenic 55629 ENSMUSG00000115457.1 ENSMUSG00000115457 ENSMUST00000227885 Gm2387 processed_pseudogene Interval_52972 chr14 52428551 52429198 + 0 NA TTS (ENSMUSG00000076758.6) TR_V_gene-TTS (ENSMUSG00000076758.6) 907 ENSMUSG00000076758.6 ENSMUSG00000076758 ENSMUST00000185651 Trav1 TR_V_gene Interval_18044 chr10 81517797 81518870 + 0 NA intron (ENSMUSG00000034792.8, intron 1 of 6) protein_coding-intron (ENSMUSG00000034792.8, intron 1 of 6) -5694 ENSMUSG00000034792.8 ENSMUSG00000034792 ENSMUST00000150586 Gna15 protein_coding Interval_31428 chr11 100610113 100610507 + 0 NA intron (ENSMUSG00000014195.16, intron 1 of 13) protein_coding-intron (ENSMUSG00000014195.16, intron 1 of 13) 9321 ENSMUSG00000014195.16 ENSMUSG00000014195 ENSMUST00000132886 Dnajc7 protein_coding Interval_7561 chr1 132225264 132226153 + 0 NA promoter-TSS (ENSMUSG00000079330.9) protein_coding-promoter-TSS (ENSMUSG00000079330.9) -2476 ENSMUSG00000079330.9 ENSMUSG00000079330 ENSMUST00000191418 Lemd1 protein_coding Interval_69936 chr17 3307701 3308750 + 0 NA intron (ENSMUSG00000116858.1, intron 3 of 3) lincRNA-intron (ENSMUSG00000116858.1, intron 3 of 3) 5960 ENSMUSG00000116838.1 ENSMUSG00000116838 ENSMUST00000231500 Gm6475 processed_pseudogene Interval_42749 chr13 18919695 18919961 + 0 NA Intergenic Intergenic -2749 ENSMUSG00000089046.1 ENSMUSG00000089046 ENSMUST00000158421 Gm26172 snoRNA Interval_47777 chr13 92643258 92644242 + 0 NA intron (ENSMUSG00000021703.9, intron 1 of 4) protein_coding-intron (ENSMUSG00000021703.9, intron 1 of 11) -62032 ENSMUSG00000021703.9 ENSMUSG00000021703 ENSMUST00000224458 Serinc5 protein_coding Interval_68430 chr16 76366999 76367621 + 0 NA intron (ENSMUSG00000048490.14, intron 1 of 3) protein_coding-intron (ENSMUSG00000048490.14, intron 1 of 3) 6516 ENSMUSG00000048490.14 ENSMUSG00000048490 ENSMUST00000145649 Nrip1 protein_coding Interval_98844 chr2 155505903 155508040 + 0 NA promoter-TSS (ENSMUSG00000027603.15) protein_coding-promoter-TSS (ENSMUSG00000027603.15) -17 ENSMUSG00000027603.15 ENSMUSG00000027603 ENSMUST00000147601 Ggt7 protein_coding Interval_87103 chr19 46126278 46126475 + 0 NA intron (ENSMUSG00000117703.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000117703.1, intron 1 of 1) 1446 ENSMUSG00000117703.1 ENSMUSG00000117703 ENSMUST00000236376 Gm50306 lincRNA Interval_174822 chrX 168122690 168124198 + 0 NA promoter-TSS (ENSMUSG00000049176.16) protein_coding-promoter-TSS (ENSMUSG00000049176.16) 846 ENSMUSG00000049176.16 ENSMUSG00000049176 ENSMUST00000239138 Frmpd4 protein_coding Interval_107925 chr3 116882690 116882901 + 0 NA intron (ENSMUSG00000033386.10, intron 3 of 14) protein_coding-intron (ENSMUSG00000033386.10, intron 5 of 16) 23228 ENSMUSG00000033386.10 ENSMUSG00000033386 ENSMUST00000199030 Frrs1 protein_coding Interval_95740 chr2 115592951 115593257 + 0 NA intron (ENSMUSG00000040282.13, intron 1 of 10) protein_coding-intron (ENSMUSG00000040282.13, intron 1 of 10) 11388 ENSMUSG00000040282.13 ENSMUSG00000040282 ENSMUST00000147968 BC052040 protein_coding Interval_26605 chr11 59163068 59164111 + 0 NA promoter-TSS (ENSMUSG00000049287.5) protein_coding-promoter-TSS (ENSMUSG00000049287.5) 111 ENSMUSG00000049287.5 ENSMUSG00000049287 ENSMUST00000137433 Iba57 protein_coding Interval_66241 chr16 32550531 32551936 + 0 NA promoter-TSS (ENSMUSG00000116957.1) lincRNA-promoter-TSS (ENSMUSG00000116957.1) -509 ENSMUSG00000116957.1 ENSMUSG00000116957 ENSMUST00000232103 Gm34680 lincRNA Interval_157319 chr8 69256846 69257792 + 0 NA Intergenic Intergenic -13761 ENSMUSG00000079038.3 ENSMUSG00000079038 ENSMUST00000078257 D130040H23Rik protein_coding Interval_167222 chr9 66281984 66282826 + 0 NA Intergenic Intergenic -68045 ENSMUSG00000038664.16 ENSMUSG00000038664 ENSMUST00000130854 Herc1 protein_coding Interval_75018 chr17 60913888 60914111 + 0 NA Intergenic Intergenic 44879 ENSMUSG00000117036.1 ENSMUSG00000117036 ENSMUST00000233618 Gm33890 lincRNA Interval_49386 chr13 111598350 111598924 + 0 NA intron (ENSMUSG00000086649.1, intron 2 of 3) processed_transcript-intron (ENSMUSG00000086649.1, intron 2 of 3) -5026 ENSMUSG00000096842.1 ENSMUSG00000096842 ENSMUST00000179668 Gm10736 processed_pseudogene Interval_169961 chr9 103259013 103259534 + 0 NA intron (ENSMUSG00000033688.10, intron 3 of 6) protein_coding-intron (ENSMUSG00000033688.10, intron 13 of 16) 6952 ENSMUSG00000033688.10 ENSMUSG00000033688 ENSMUST00000142540 1300017J02Rik protein_coding Interval_44859 chr13 49157729 49158394 + 0 NA Intergenic Intergenic -10049 ENSMUSG00000037989.15 ENSMUSG00000037989 ENSMUST00000159633 Wnk2 protein_coding Interval_48300 chr13 97952302 97952650 + 0 NA intron (ENSMUSG00000021662.11, intron 17 of 27) protein_coding-intron (ENSMUSG00000021662.11, intron 25 of 35) 63941 ENSMUSG00000021662.11 ENSMUSG00000021662 ENSMUST00000224866 Arhgef28 protein_coding Interval_150535 chr7 112134562 112134733 + 0 NA intron (ENSMUSG00000030772.6, intron 4 of 7) protein_coding-intron (ENSMUSG00000030772.6, intron 4 of 7) 24410 ENSMUSG00000030772.6 ENSMUSG00000030772 ENSMUST00000033036 Dkk3 protein_coding Interval_66183 chr16 32192008 32192378 + 0 NA Intergenic Intergenic 12370 ENSMUSG00000075269.5 ENSMUSG00000075269 ENSMUST00000099990 Bex6 protein_coding Interval_84078 chr19 7084388 7084906 + 0 NA intron (ENSMUSG00000036278.7, intron 3 of 10) protein_coding-intron (ENSMUSG00000036278.7, intron 3 of 10) 3774 ENSMUSG00000117901.1 ENSMUSG00000117901 ENSMUST00000236559 AC109619.1 antisense Interval_31232 chr11 99028901 99029904 + 0 NA Intergenic Intergenic -12250 ENSMUSG00000065262.1 ENSMUSG00000065262 ENSMUST00000083328 Gm23451 snoRNA Interval_62218 chr15 88902957 88904707 + 0 NA intron (ENSMUSG00000022388.14, intron 12 of 12) protein_coding-intron (ENSMUSG00000022388.14, intron 12 of 12) -12307 ENSMUSG00000093394.1 ENSMUSG00000093394 ENSMUST00000176338 Gm20621 sense_overlapping Interval_3830 chr1 63315031 63315307 + 0 NA TTS (ENSMUSG00000027520.16) protein_coding-TTS (ENSMUSG00000027520.16) -14786 ENSMUSG00000094214.1 ENSMUSG00000094214 ENSMUST00000083151 Gm23448 snRNA Interval_98109 chr2 148141646 148141839 + 0 NA Intergenic Intergenic -9408 ENSMUSG00000089458.1 ENSMUSG00000089458 ENSMUST00000158833 Gm24221 snoRNA Interval_166172 chr9 57244055 57244763 + 0 NA intron (ENSMUSG00000070298.6, intron 4 of 12) protein_coding-intron (ENSMUSG00000070298.6, intron 4 of 12) 7853 ENSMUSG00000070298.6 ENSMUSG00000070298 ENSMUST00000093837 Trcg1 protein_coding Interval_24262 chr11 31932965 31933530 + 0 NA exon (ENSMUSG00000020300.14, exon 9 of 9) protein_coding-exon (ENSMUSG00000020300.14, exon 9 of 9) -32345 ENSMUSG00000020299.6 ENSMUSG00000020299 ENSMUST00000102829 4930524B15Rik protein_coding Interval_65455 chr16 22416240 22417290 + 0 NA intron (ENSMUSG00000013089.15, intron 6 of 6) protein_coding-intron (ENSMUSG00000013089.15, intron 5 of 12) -14936 ENSMUSG00000013089.15 ENSMUSG00000013089 ENSMUST00000170393 Etv5 protein_coding Interval_141594 chr6 130174405 130175067 + 0 NA Intergenic Intergenic -2017 ENSMUSG00000094579.1 ENSMUSG00000094579 ENSMUST00000178922 Gm23552 snRNA Interval_98785 chr2 154928364 154929160 + 0 NA intron (ENSMUSG00000027596.10, intron 1 of 4) protein_coding-intron (ENSMUSG00000027596.10, intron 1 of 4) -35980 ENSMUSG00000074656.12 ENSMUSG00000074656 ENSMUST00000135524 Eif2s2 protein_coding Interval_78239 chr18 10599439 10602291 + 0 NA intron (ENSMUSG00000024293.16, intron 1 of 7) protein_coding-intron (ENSMUSG00000024293.16, intron 1 of 10) 9198 ENSMUSG00000024293.16 ENSMUSG00000024293 ENSMUST00000234151 Esco1 protein_coding Interval_145242 chr7 30856025 30856504 + 0 NA promoter-TSS (ENSMUSG00000019429.7) protein_coding-promoter-TSS (ENSMUSG00000019429.7) -97 ENSMUSG00000019429.7 ENSMUSG00000019429 ENSMUST00000185748 Ffar3 protein_coding Interval_46073 chr13 60771882 60772771 + 0 NA TTS (ENSMUSG00000096874.2) processed_pseudogene-TTS (ENSMUSG00000096874.2) 651 ENSMUSG00000096874.2 ENSMUSG00000096874 ENSMUST00000078515 Gm10312 processed_pseudogene Interval_73199 chr17 35539354 35540089 + 0 NA Intergenic Intergenic 6520 ENSMUSG00000024409.8 ENSMUSG00000024409 ENSMUST00000025273 Psors1c2 protein_coding Interval_18422 chr10 85678092 85679073 + 0 NA Intergenic Intergenic -29098 ENSMUSG00000111435.1 ENSMUSG00000111435 ENSMUST00000217622 Gm47358 lincRNA Interval_49738 chr13 114346406 114346626 + 0 NA intron (ENSMUSG00000021764.8, intron 1 of 3) protein_coding-intron (ENSMUSG00000021764.8, intron 2 of 4) 41534 ENSMUSG00000021764.8 ENSMUSG00000021764 ENSMUST00000225978 Ndufs4 protein_coding Interval_156621 chr8 54917727 54918680 + 0 NA Intergenic Intergenic -31053 ENSMUSG00000039375.16 ENSMUSG00000039375 ENSMUST00000176180 Wdr17 protein_coding Interval_20654 chr10 120049208 120050408 + 0 NA intron (ENSMUSG00000034813.18, intron 10 of 14) protein_coding-intron (ENSMUSG00000034813.18, intron 19 of 22) 63057 ENSMUSG00000020228.11 ENSMUSG00000020228 ENSMUST00000154501 Helb protein_coding Interval_11633 chr1 183513214 183515464 + 0 NA Intergenic Intergenic -49173 ENSMUSG00000103451.1 ENSMUSG00000103451 ENSMUST00000195148 Gm33973 lincRNA Interval_106622 chr3 97874550 97875318 + 0 NA intron (ENSMUSG00000038170.15, intron 1 of 45) protein_coding-intron (ENSMUSG00000038170.15, intron 1 of 46) 26155 ENSMUSG00000086557.1 ENSMUSG00000086557 ENSMUST00000127317 Gm15999 lincRNA Interval_120421 chr4 148496213 148496864 + 0 NA exon (ENSMUSG00000028989.3, exon 4 of 5) protein_coding-exon (ENSMUSG00000028989.3, exon 4 of 5) 3922 ENSMUSG00000028989.3 ENSMUSG00000028989 ENSMUST00000030840 Angptl7 protein_coding Interval_141440 chr6 128299816 128301056 + 0 NA exon (ENSMUSG00000030353.15, exon 1 of 12) protein_coding-exon (ENSMUSG00000030353.15, exon 1 of 12) 302 ENSMUSG00000030353.15 ENSMUSG00000030353 ENSMUST00000143004 Tead4 protein_coding Interval_143798 chr7 16376180 16377336 + 0 NA intron (ENSMUSG00000052833.9, intron 2 of 8) protein_coding-intron (ENSMUSG00000052833.9, intron 2 of 8) 11048 ENSMUSG00000052833.9 ENSMUSG00000052833 ENSMUST00000209749 Sae1 protein_coding Interval_109696 chr3 146044878 146045700 + 0 NA intron (ENSMUSG00000043020.13, intron 2 of 4) protein_coding-intron (ENSMUSG00000043020.13, intron 20 of 22) 1896 ENSMUSG00000043020.13 ENSMUSG00000043020 ENSMUST00000161104 Wdr63 protein_coding Interval_106282 chr3 95115602 95116582 + 0 NA promoter-TSS (ENSMUSG00000008958.14) protein_coding-promoter-TSS (ENSMUSG00000008958.14) -434 ENSMUSG00000008958.14 ENSMUSG00000008958 ENSMUST00000152333 Vps72 protein_coding Interval_114644 chr4 83417124 83418200 + 0 NA promoter-TSS (ENSMUSG00000028483.13) protein_coding-promoter-TSS (ENSMUSG00000028483.13) -26994 ENSMUSG00000086321.1 ENSMUSG00000086321 ENSMUST00000155822 Gm11413 antisense Interval_148676 chr7 84041105 84042021 + 0 NA intron (ENSMUSG00000052353.13, intron 1 of 23) protein_coding-intron (ENSMUSG00000052353.13, intron 1 of 28) 44939 ENSMUSG00000052353.13 ENSMUSG00000052353 ENSMUST00000147578 Cemip protein_coding Interval_22876 chr11 16980530 16980833 + 0 NA intron (ENSMUSG00000020120.15, intron 9 of 9) protein_coding-intron (ENSMUSG00000020120.15, intron 9 of 9) 22318 ENSMUSG00000020120.15 ENSMUSG00000020120 ENSMUST00000156101 Plek protein_coding Interval_124690 chr5 53315549 53316242 + 0 NA Intergenic Intergenic 30477 ENSMUSG00000077696.1 ENSMUSG00000077696 ENSMUST00000104508 n-R5s172 rRNA Interval_103777 chr3 52667988 52668958 + 0 NA Intergenic Intergenic 54282 ENSMUSG00000065926.1 ENSMUSG00000065926 ENSMUST00000083992 Gm22798 snRNA Interval_110851 chr4 8988192 8988958 + 0 NA Intergenic Intergenic 47316 ENSMUSG00000083786.1 ENSMUSG00000083786 ENSMUST00000119493 Rps18-ps2 processed_pseudogene Interval_130507 chr5 128471026 128471682 + 0 NA Intergenic Intergenic 22450 ENSMUSG00000104727.1 ENSMUSG00000104727 ENSMUST00000199898 Gm42500 lincRNA Interval_157671 chr8 72197589 72198489 + 0 NA intron (ENSMUSG00000062007.13, intron 3 of 4) protein_coding-intron (ENSMUSG00000062007.13, intron 4 of 5) 4596 ENSMUSG00000062007.13 ENSMUSG00000062007 ENSMUST00000165324 Hsh2d protein_coding Interval_112106 chr4 34729713 34730378 + 0 NA intron (ENSMUSG00000028294.15, intron 1 of 5) protein_coding-intron (ENSMUSG00000028294.15, intron 1 of 12) 150 ENSMUSG00000028294.15 ENSMUSG00000028294 ENSMUST00000160209 Cfap206 protein_coding Interval_19872 chr10 110762186 110762673 + 0 NA intron (ENSMUSG00000020185.16, intron 4 of 6) protein_coding-intron (ENSMUSG00000020185.16, intron 4 of 12) 16964 ENSMUSG00000020185.16 ENSMUSG00000020185 ENSMUST00000174593 E2f7 protein_coding Interval_67313 chr16 45935940 45936692 + 0 NA promoter-TSS (ENSMUSG00000085781.1) antisense-promoter-TSS (ENSMUSG00000085781.1) -7 ENSMUSG00000085781.1 ENSMUSG00000085781 ENSMUST00000152070 Gm15640 antisense Interval_151807 chr7 126780073 126781185 + 0 NA promoter-TSS (ENSMUSG00000030699.16) protein_coding-promoter-TSS (ENSMUSG00000030699.16) -854 ENSMUSG00000030699.16 ENSMUSG00000030699 ENSMUST00000094037 Tbx6 protein_coding Interval_168868 chr9 88236986 88237423 + 0 NA Intergenic Intergenic -22691 ENSMUSG00000100782.1 ENSMUSG00000100782 ENSMUST00000190118 Gm28231 lincRNA Interval_142393 chr6 141476393 141476626 + 0 NA intron (ENSMUSG00000041741.10, intron 6 of 15) protein_coding-intron (ENSMUSG00000041741.10, intron 6 of 15) 34149 ENSMUSG00000108169.1 ENSMUSG00000108169 ENSMUST00000204360 Gm43958 TEC Interval_5750 chr1 91433951 91434540 + 0 NA intron (ENSMUSG00000055866.9, intron 12 of 22) protein_coding-intron (ENSMUSG00000055866.9, intron 12 of 22) 15620 ENSMUSG00000055866.9 ENSMUSG00000055866 ENSMUST00000185298 Per2 protein_coding Interval_27276 chr11 65186966 65187657 + 0 NA exon (ENSMUSG00000020542.18, exon 6 of 10) protein_coding-exon (ENSMUSG00000020542.18, exon 6 of 10) -5154 ENSMUSG00000020542.18 ENSMUSG00000020542 ENSMUST00000150823 Myocd protein_coding Interval_134854 chr6 32586409 32588767 + 0 NA exon (ENSMUSG00000029765.12, exon 1 of 32) protein_coding-exon (ENSMUSG00000029765.12, exon 1 of 32) -22531 ENSMUSG00000084386.1 ENSMUSG00000084386 ENSMUST00000122350 Gm13852 processed_pseudogene Interval_15756 chr10 56114946 56116271 + 0 NA exon (ENSMUSG00000047669.8, exon 2 of 2) protein_coding-exon (ENSMUSG00000047669.8, exon 2 of 2) 693 ENSMUSG00000047669.8 ENSMUSG00000047669 ENSMUST00000217668 Msl3l2 protein_coding Interval_157000 chr8 64204051 64207125 + 0 NA exon (ENSMUSG00000053626.5, exon 1 of 21) protein_coding-exon (ENSMUSG00000053626.5, exon 1 of 21) 683 ENSMUSG00000053626.5 ENSMUSG00000053626 ENSMUST00000210256 Tll1 protein_coding Interval_136699 chr6 58125014 58125187 + 0 NA Intergenic Intergenic -8470 ENSMUSG00000093743.1 ENSMUSG00000093743 ENSMUST00000175797 Vmn1r-ps17 unprocessed_pseudogene Interval_156092 chr8 44199968 44200381 + 0 NA Intergenic Intergenic 28371 ENSMUSG00000102378.1 ENSMUSG00000102378 ENSMUST00000193497 Gm37972 TEC Interval_144784 chr7 28227006 28227419 + 0 NA exon (ENSMUSG00000108968.1, exon 1 of 1) TEC-exon (ENSMUSG00000108968.1, exon 1 of 1) 854 ENSMUSG00000108968.1 ENSMUSG00000108968 ENSMUST00000207620 Gm45011 TEC Interval_72270 chr17 28898068 28899451 + 0 NA exon (ENSMUSG00000048905.5, exon 12 of 12) protein_coding-exon (ENSMUSG00000048905.5, exon 12 of 12) -6506 ENSMUSG00000085333.1 ENSMUSG00000085333 ENSMUST00000125317 1700030A11Rik antisense Interval_20426 chr10 117496019 117496743 + 0 NA Intergenic Intergenic -48888 ENSMUSG00000112344.1 ENSMUSG00000112344 ENSMUST00000220189 Gm32141 lincRNA Interval_61137 chr15 79460288 79460800 + 0 NA Intergenic Intergenic -11837 ENSMUSG00000106626.1 ENSMUSG00000106626 ENSMUST00000104762 Gm44302 miRNA Interval_9777 chr1 162063440 162064173 + 0 NA intron (ENSMUSG00000040265.16, intron 16 of 20) protein_coding-intron (ENSMUSG00000040265.16, intron 16 of 19) 24662 ENSMUSG00000102994.1 ENSMUSG00000102994 ENSMUST00000193239 Gm37767 TEC Interval_122192 chr5 19264781 19265035 + 0 NA intron (ENSMUSG00000040003.18, intron 1 of 2) protein_coding-intron (ENSMUSG00000040003.18, intron 1 of 22) -38740 ENSMUSG00000097626.5 ENSMUSG00000097626 ENSMUST00000197496 4921504A21Rik antisense Interval_23547 chr11 23290767 23291172 + 0 NA intron (ENSMUSG00000020290.14, intron 21 of 25) protein_coding-intron (ENSMUSG00000020290.14, intron 21 of 25) 6325 ENSMUSG00000020290.14 ENSMUSG00000020290 ENSMUST00000150750 Xpo1 protein_coding Interval_91045 chr2 34652436 34652669 + 0 NA Intergenic Intergenic -2312 ENSMUSG00000087635.3 ENSMUSG00000087635 ENSMUST00000117516 Gm13414 processed_pseudogene Interval_95469 chr2 109890203 109891530 + 0 NA promoter-TSS (ENSMUSG00000027162.7) protein_coding-promoter-TSS (ENSMUSG00000027162.7) -4 ENSMUSG00000027162.7 ENSMUSG00000027162 ENSMUST00000151163 Lin7c protein_coding Interval_24862 chr11 40551687 40551959 + 0 NA Intergenic Intergenic 18702 ENSMUSG00000082390.1 ENSMUSG00000082390 ENSMUST00000120460 Gm12136 processed_pseudogene Interval_79390 chr18 31590057 31590338 + 0 NA intron (ENSMUSG00000024259.9, intron 7 of 7) protein_coding-intron (ENSMUSG00000024259.9, intron 7 of 7) -19315 ENSMUSG00000092124.1 ENSMUSG00000092124 ENSMUST00000164667 B930094E09Rik protein_coding Interval_97924 chr2 145797801 145798441 + 0 NA intron (ENSMUSG00000001768.16, intron 1 of 2) protein_coding-intron (ENSMUSG00000001768.16, intron 2 of 12) -80165 ENSMUSG00000092758.1 ENSMUSG00000092758 ENSMUST00000175017 Gm25026 miRNA Interval_43000 chr13 22788096 22788443 + 0 NA Intergenic Intergenic -10869 ENSMUSG00000071493.5 ENSMUSG00000071493 ENSMUST00000124841 Vmn1r208 protein_coding Interval_103375 chr3 40986310 40986834 + 0 NA Intergenic Intergenic -6121 ENSMUSG00000064927.1 ENSMUSG00000064927 ENSMUST00000082993 Gm22043 snRNA Interval_97290 chr2 133133666 133133946 + 0 NA Intergenic Intergenic -65805 ENSMUSG00000083689.1 ENSMUSG00000083689 ENSMUST00000117717 Gm14094 processed_pseudogene Interval_13 GL456210.1 159907 160149 + 0 NA NA NA NA NA Interval_53639 chr14 60493946 60494962 + 0 NA intron (ENSMUSG00000101797.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000101797.1, intron 1 of 2) 9246 ENSMUSG00000101797.1 ENSMUSG00000101797 ENSMUST00000190392 Gm29266 lincRNA Interval_78839 chr18 20917768 20918207 + 0 NA Intergenic Intergenic -21894 ENSMUSG00000033382.15 ENSMUSG00000033382 ENSMUST00000224530 Trappc8 protein_coding Interval_129296 chr5 118744796 118745211 + 0 NA intron (ENSMUSG00000018076.12, intron 17 of 30) protein_coding-intron (ENSMUSG00000018076.12, intron 17 of 30) -5384 ENSMUSG00000018076.12 ENSMUSG00000018076 ENSMUST00000202787 Med13l protein_coding Interval_10564 chr1 171899415 171900248 + 0 NA Intergenic Intergenic 4167 ENSMUSG00000073492.2 ENSMUSG00000073492 ENSMUST00000097466 Gm10521 protein_coding Interval_86960 chr19 45222449 45222643 + 0 NA Intergenic Intergenic 13266 ENSMUSG00000025216.9 ENSMUSG00000025216 ENSMUST00000099401 Lbx1 protein_coding Interval_132708 chr5 147313046 147313759 + 0 NA Intergenic Intergenic -6132 ENSMUSG00000029646.3 ENSMUSG00000029646 ENSMUST00000031650 Cdx2 protein_coding Interval_15821 chr10 57570968 57572336 + 0 NA Intergenic Intergenic -29741 ENSMUSG00000093406.1 ENSMUSG00000093406 ENSMUST00000177147 Rpl48-ps1 processed_pseudogene Interval_165651 chr9 50692513 50693926 + 0 NA TTS (ENSMUSG00000032064.17) protein_coding-TTS (ENSMUSG00000032064.17) 4552 ENSMUSG00000032064.17 ENSMUSG00000032064 ENSMUST00000118707 Dixdc1 protein_coding Interval_27419 chr11 67514414 67515390 + 0 NA intron (ENSMUSG00000033066.16, intron 1 of 6) protein_coding-intron (ENSMUSG00000033066.16, intron 1 of 13) 62564 ENSMUSG00000087058.1 ENSMUSG00000087058 ENSMUST00000152963 Gm12301 antisense Interval_124991 chr5 63458443 63458734 + 0 NA Intergenic Intergenic 192306 ENSMUSG00000104868.1 ENSMUSG00000104868 ENSMUST00000067917 Gm9954 TEC Interval_136010 chr6 49508792 49509177 + 0 NA Intergenic Intergenic 34743 ENSMUSG00000108266.1 ENSMUSG00000108266 ENSMUST00000204010 Gm5305 processed_pseudogene Interval_126558 chr5 90245239 90247930 + 0 NA intron (ENSMUSG00000055204.15, intron 28 of 33) protein_coding-intron (ENSMUSG00000055204.15, intron 28 of 33) -30562 ENSMUSG00000035505.14 ENSMUSG00000035505 ENSMUST00000148480 Cox18 protein_coding Interval_3235 chr1 55042422 55043135 + 0 NA Intergenic Intergenic 10334 ENSMUSG00000103030.1 ENSMUSG00000103030 ENSMUST00000193614 E330011M16Rik TEC Interval_33309 chr11 115838882 115840163 + 0 NA intron (ENSMUSG00000020782.18, intron 2 of 25) protein_coding-intron (ENSMUSG00000020782.18, intron 2 of 25) 15464 ENSMUSG00000020782.18 ENSMUSG00000020782 ENSMUST00000132999 Llgl2 protein_coding Interval_119253 chr4 136461230 136463836 + 0 NA exon (ENSMUSG00000066178.4, exon 1 of 1) lincRNA-exon (ENSMUSG00000066178.4, exon 1 of 1) 283 ENSMUSG00000066178.4 ENSMUSG00000066178 ENSMUST00000084593 6030445D17Rik lincRNA Interval_159289 chr8 92817958 92818578 + 0 NA Intergenic Intergenic -21916 ENSMUSG00000031740.8 ENSMUSG00000031740 ENSMUST00000211567 Mmp2 protein_coding Interval_18920 chr10 93160336 93161898 + 0 NA exon (ENSMUSG00000020015.10, exon 1 of 17) protein_coding-exon (ENSMUSG00000020015.10, exon 1 of 17) -1668 ENSMUSG00000089214.1 ENSMUSG00000089214 ENSMUST00000158589 Mir1931 miRNA Interval_75248 chr17 65343911 65344219 + 0 NA intron (ENSMUSG00000045036.15, intron 11 of 12) protein_coding-intron (ENSMUSG00000045036.15, intron 14 of 15) 52225 ENSMUSG00000117012.1 ENSMUSG00000117012 ENSMUST00000232744 Gm18992 processed_pseudogene Interval_141836 chr6 134829547 134830880 + 0 NA promoter-TSS (ENSMUSG00000032652.13) protein_coding-promoter-TSS (ENSMUSG00000032652.13) -5631 ENSMUSG00000108233.1 ENSMUSG00000108233 ENSMUST00000203947 Gm44084 processed_pseudogene Interval_58226 chr15 31200093 31201403 + 0 NA Intergenic Intergenic -6410 ENSMUSG00000077468.1 ENSMUSG00000077468 ENSMUST00000104280 Gm26416 snoRNA Interval_17792 chr10 80115893 80118566 + 0 NA intron (ENSMUSG00000003068.17, intron 1 of 10) protein_coding-intron (ENSMUSG00000003068.17, intron 1 of 9) -9453 ENSMUSG00000003068.17 ENSMUSG00000003068 ENSMUST00000152592 Stk11 protein_coding Interval_54617 chr14 72149599 72149972 + 0 NA Intergenic Intergenic 18697 ENSMUSG00000064485.1 ENSMUSG00000064485 ENSMUST00000082551 Gm23735 snRNA Interval_112376 chr4 40916370 40917614 + 0 NA Intergenic Intergenic -3062 ENSMUSG00000028415.4 ENSMUSG00000028415 ENSMUST00000132943 Spink4 protein_coding Interval_129168 chr5 117955789 117956552 + 0 NA exon (ENSMUSG00000029361.18, exon 29 of 29) protein_coding-exon (ENSMUSG00000029361.18, exon 29 of 29) -16652 ENSMUSG00000098072.1 ENSMUSG00000098072 ENSMUST00000182216 Gm26995 antisense Interval_87254 chr19 47201380 47202780 + 0 NA promoter-TSS (ENSMUSG00000118127.1) antisense-promoter-TSS (ENSMUSG00000118127.1) -48 ENSMUSG00000118127.1 ENSMUSG00000118127 ENSMUST00000236668 Gm36693 antisense Interval_88163 chr19 60146437 60146948 + 0 NA intron (ENSMUSG00000053117.11, intron 1 of 2) lincRNA-intron (ENSMUSG00000053117.11, intron 1 of 4) -4835 ENSMUSG00000053117.11 ENSMUSG00000053117 ENSMUST00000235893 E330013P04Rik lincRNA Interval_31368 chr11 100286867 100287625 + 0 NA intron (ENSMUSG00000086163.1, intron 1 of 3) antisense-intron (ENSMUSG00000086163.1, intron 1 of 3) 4040 ENSMUSG00000086163.1 ENSMUSG00000086163 ENSMUST00000132973 Gm14206 antisense Interval_168146 chr9 77503391 77503838 + 0 NA intron (ENSMUSG00000032352.16, intron 1 of 13) protein_coding-intron (ENSMUSG00000032352.16, intron 1 of 13) 41234 ENSMUSG00000032352.16 ENSMUSG00000032352 ENSMUST00000183980 Lrrc1 protein_coding Interval_156731 chr8 57675961 57676778 + 0 NA Intergenic Intergenic 15417 ENSMUSG00000110419.1 ENSMUSG00000110419 ENSMUST00000211787 AW046200 bidirectional_promoter_lncRNA Interval_146420 chr7 45785177 45787615 + 0 NA promoter-TSS (ENSMUSG00000062044.16) protein_coding-promoter-TSS (ENSMUSG00000062044.16) 1016 ENSMUSG00000062044.16 ENSMUSG00000062044 ENSMUST00000211127 Lmtk3 protein_coding Interval_136208 chr6 52045267 52045975 + 0 NA Intergenic Intergenic 33020 ENSMUSG00000108244.1 ENSMUSG00000108244 ENSMUST00000203453 Gm44077 lincRNA Interval_65537 chr16 23138622 23138885 + 0 NA Intergenic Intergenic -4433 ENSMUSG00000116540.1 ENSMUSG00000116540 ENSMUST00000232214 Gm49624 processed_pseudogene Interval_91595 chr2 44318215 44319207 + 0 NA intron (ENSMUSG00000049744.15, intron 12 of 14) protein_coding-intron (ENSMUSG00000049744.15, intron 12 of 13) -110224 ENSMUSG00000088124.1 ENSMUSG00000088124 ENSMUST00000157499 Gm22867 snRNA Interval_119688 chr4 139230947 139231211 + 0 NA intron (ENSMUSG00000028745.18, intron 1 of 6) protein_coding-intron (ENSMUSG00000028745.18, intron 1 of 8) 36968 ENSMUSG00000028745.18 ENSMUSG00000028745 ENSMUST00000132385 Capzb protein_coding Interval_88028 chr19 58112178 58112429 + 0 NA intron (ENSMUSG00000054843.9, intron 28 of 28) protein_coding-intron (ENSMUSG00000054843.9, intron 28 of 28) -16272 ENSMUSG00000117871.1 ENSMUSG00000117871 ENSMUST00000235250 Gm50287 lincRNA Interval_117285 chr4 122587631 122588141 + 0 NA intron (ENSMUSG00000081377.1, intron 3 of 3) unprocessed_pseudogene-intron (ENSMUSG00000081377.1, intron 3 of 3) -5098 ENSMUSG00000084196.1 ENSMUSG00000084196 ENSMUST00000117190 Gm12874 processed_pseudogene Interval_58013 chr15 26100243 26100552 + 0 NA Intergenic Intergenic -37959 ENSMUSG00000115335.1 ENSMUSG00000115335 ENSMUST00000227975 Gm41279 lincRNA Interval_44362 chr13 44209305 44210671 + 0 NA intron (ENSMUSG00000113186.1, intron 2 of 3) lincRNA-intron (ENSMUSG00000113186.1, intron 1 of 2) 6499 ENSMUSG00000113186.1 ENSMUSG00000113186 ENSMUST00000223513 A330076C08Rik lincRNA Interval_118898 chr4 134349920 134352583 + 0 NA intron (ENSMUSG00000028836.14, intron 6 of 7) protein_coding-intron (ENSMUSG00000028836.14, intron 5 of 6) 8045 ENSMUSG00000028836.14 ENSMUSG00000028836 ENSMUST00000081094 Slc30a2 protein_coding Interval_29715 chr11 86341808 86342070 + 0 NA intron (ENSMUSG00000034297.14, intron 3 of 29) protein_coding-intron (ENSMUSG00000034297.14, intron 3 of 29) 8733 ENSMUSG00000088230.1 ENSMUSG00000088230 ENSMUST00000157605 Gm25427 misc_RNA Interval_86501 chr19 41160247 41160759 + 0 NA intron (ENSMUSG00000025013.15, intron 2 of 20) protein_coding-intron (ENSMUSG00000025013.15, intron 2 of 20) 46271 ENSMUSG00000025013.15 ENSMUSG00000025013 ENSMUST00000169941 Tll2 protein_coding Interval_50717 chr14 18511010 18511616 + 0 NA Intergenic Intergenic -20050 ENSMUSG00000035129.6 ENSMUSG00000035129 ENSMUST00000038304 Gm6781 processed_pseudogene Interval_99920 chr2 165818935 165823368 + 0 NA intron (ENSMUSG00000039671.18, intron 11 of 22) protein_coding-intron (ENSMUSG00000039671.18, intron 12 of 23) -36533 ENSMUSG00000085274.1 ENSMUSG00000085274 ENSMUST00000155786 BC046401 processed_transcript Interval_98724 chr2 154515854 154516184 + 0 NA promoter-TSS (ENSMUSG00000038533.15) protein_coding-promoter-TSS (ENSMUSG00000038533.15) -31066 ENSMUSG00000038523.10 ENSMUSG00000038523 ENSMUST00000109709 1700003F12Rik protein_coding Interval_94106 chr2 84227984 84228240 + 0 NA Intergenic Intergenic 78057 ENSMUSG00000093115.1 ENSMUSG00000093115 ENSMUST00000175374 Gm25972 miRNA Interval_117980 chr4 127444168 127445526 + 0 NA Intergenic Intergenic -30055 ENSMUSG00000087470.2 ENSMUSG00000087470 ENSMUST00000146587 A630031M04Rik lincRNA Interval_168760 chr9 86742904 86744000 + 0 NA promoter-TSS (ENSMUSG00000033491.13) protein_coding-promoter-TSS (ENSMUSG00000033491.13) -197 ENSMUSG00000033491.13 ENSMUSG00000033491 ENSMUST00000036426 Prss35 protein_coding Interval_75265 chr17 65557975 65559692 + 0 NA Intergenic Intergenic 1943 ENSMUSG00000117158.1 ENSMUSG00000117158 ENSMUST00000233030 Gm49866 processed_pseudogene Interval_54771 chr14 74926915 74927789 + 0 NA intron (ENSMUSG00000115002.1, intron 1 of 1) protein_coding-intron (ENSMUSG00000068015.8, intron 1 of 19) 907 ENSMUSG00000115002.1 ENSMUSG00000115002 ENSMUST00000227773 Gm10847 antisense Interval_41233 chr12 112012297 112013791 + 0 NA promoter-TSS (ENSMUSG00000054003.13) protein_coding-promoter-TSS (ENSMUSG00000054003.13) -22 ENSMUSG00000054003.13 ENSMUSG00000054003 ENSMUST00000193630 Tdrd9 protein_coding Interval_158521 chr8 84217492 84217757 + 0 NA intron (ENSMUSG00000035671.6, intron 11 of 13) protein_coding-intron (ENSMUSG00000035671.6, intron 11 of 13) 8704 ENSMUSG00000097296.1 ENSMUSG00000097296 ENSMUST00000180630 Gm26532 lincRNA Interval_36192 chr12 38734295 38734646 + 0 NA Intergenic Intergenic 7740 ENSMUSG00000113520.1 ENSMUSG00000113520 ENSMUST00000222877 Gm4257 processed_pseudogene Interval_58910 chr15 39920646 39921221 + 0 NA intron (ENSMUSG00000022305.13, intron 1 of 1) protein_coding-intron (ENSMUSG00000022305.13, intron 1 of 6) 22757 ENSMUSG00000022305.13 ENSMUSG00000022305 ENSMUST00000146714 Lrp12 protein_coding Interval_113729 chr4 57879364 57880538 + 0 NA intron (ENSMUSG00000038729.24, intron 2 of 2) protein_coding-intron (ENSMUSG00000038729.24, intron 1 of 3) -2456 ENSMUSG00000096195.1 ENSMUSG00000096195 ENSMUST00000179236 Gm26138 snRNA Interval_30271 chr11 92646086 92646273 + 0 NA Intergenic Intergenic 124794 ENSMUSG00000081363.2 ENSMUSG00000081363 ENSMUST00000118237 Gm11500 processed_pseudogene Interval_43550 chr13 33078001 33078797 + 0 NA promoter-TSS (ENSMUSG00000051029.8) protein_coding-promoter-TSS (ENSMUSG00000051029.8) -176 ENSMUSG00000051029.8 ENSMUSG00000051029 ENSMUST00000016951 Serpinb1b protein_coding Interval_98149 chr2 148767750 148768003 + 0 NA TTS (ENSMUSG00000036958.5) protein_coding-TTS (ENSMUSG00000036958.5) 3621 ENSMUSG00000036958.5 ENSMUSG00000036958 ENSMUST00000028934 Cst11 protein_coding Interval_113147 chr4 48621942 48623541 + 0 NA intron (ENSMUSG00000028347.14, intron 5 of 9) protein_coding-intron (ENSMUSG00000028347.14, intron 5 of 9) -14193 ENSMUSG00000028347.14 ENSMUSG00000028347 ENSMUST00000141720 Tmeff1 protein_coding Interval_106779 chr3 100721024 100722080 + 0 NA Intergenic Intergenic 17161 ENSMUSG00000087759.1 ENSMUSG00000087759 ENSMUST00000157134 Gm23465 misc_RNA Interval_123325 chr5 31460122 31460532 + 0 NA promoter-TSS (ENSMUSG00000107120.1) TEC-promoter-TSS (ENSMUSG00000107120.1) -695 ENSMUSG00000107120.1 ENSMUSG00000107120 ENSMUST00000202437 Gm43059 TEC Interval_79904 chr18 35822101 35823900 + 0 NA intron (ENSMUSG00000117841.1, intron 4 of 4) processed_transcript-intron (ENSMUSG00000117841.1, intron 4 of 4) -6893 ENSMUSG00000046668.9 ENSMUSG00000046668 ENSMUST00000235404 Cxxc5 protein_coding Interval_23990 chr11 29213032 29213425 + 0 NA promoter-TSS (ENSMUSG00000020463.15) protein_coding-promoter-TSS (ENSMUSG00000020463.15) 33840 ENSMUSG00000020462.14 ENSMUSG00000020462 ENSMUST00000127940 Cfap36 protein_coding Interval_99228 chr2 158230386 158231341 + 0 NA Intergenic Intergenic -1641 ENSMUSG00000037813.13 ENSMUSG00000037813 ENSMUST00000046944 D630003M21Rik protein_coding Interval_155562 chr8 34546740 34547164 + 0 NA Intergenic Intergenic 23634 ENSMUSG00000110015.1 ENSMUSG00000110015 ENSMUST00000211015 Gm33968 lincRNA Interval_121086 chr4 152771048 152771748 + 0 NA Intergenic Intergenic 73858 ENSMUSG00000073699.3 ENSMUSG00000073699 ENSMUST00000143133 Gm833 lincRNA Interval_54414 chr14 69130051 69130912 + 0 NA Intergenic Intergenic -28190 ENSMUSG00000098713.1 ENSMUSG00000098713 ENSMUST00000184266 Rps2-ps5 processed_pseudogene Interval_41422 chr12 113687731 113688081 + 0 NA promoter-TSS (ENSMUSG00000103185.1) IG_V_pseudogene-promoter-TSS (ENSMUSG00000103185.1) -185 ENSMUSG00000103185.1 ENSMUSG00000103185 ENSMUST00000193354 Ighv5-11 IG_V_pseudogene Interval_30289 chr11 92967499 92969421 + 0 NA Intergenic Intergenic 58163 ENSMUSG00000087810.1 ENSMUSG00000087810 ENSMUST00000157185 Gm25113 snoRNA Interval_19518 chr10 101872895 101873110 + 0 NA intron (ENSMUSG00000019888.16, intron 2 of 8) protein_coding-intron (ENSMUSG00000019888.16, intron 2 of 5) 100310 ENSMUSG00000092952.1 ENSMUSG00000092952 ENSMUST00000175211 Mir3059 miRNA Interval_64348 chr16 10674040 10674995 + 0 NA intron (ENSMUSG00000087384.1, intron 3 of 4) protein_coding-intron (ENSMUSG00000068663.14, intron 18 of 20) 9022 ENSMUSG00000087384.1 ENSMUSG00000087384 ENSMUST00000126849 Gm15558 antisense Interval_41491 chr12 115075848 115076165 + 0 NA Intergenic Intergenic -8004 ENSMUSG00000102364.1 ENSMUSG00000102364 ENSMUST00000194257 Ighv8-5 IG_V_gene Interval_65184 chr16 20404760 20405885 + 0 NA TTS (ENSMUSG00000022822.16) protein_coding-TTS (ENSMUSG00000022822.16) -6374 ENSMUSG00000022822.16 ENSMUSG00000022822 ENSMUST00000231522 Abcc5 protein_coding Interval_30581 chr11 95237276 95237529 + 0 NA Intergenic Intergenic -11770 ENSMUSG00000085992.1 ENSMUSG00000085992 ENSMUST00000150818 Gm11515 lincRNA Interval_30094 chr11 89142591 89143363 + 0 NA Intergenic Intergenic -6211 ENSMUSG00000089485.1 ENSMUSG00000089485 ENSMUST00000158860 Gm24734 misc_RNA Interval_28084 chr11 72720860 72721067 + 0 NA intron (ENSMUSG00000020790.14, intron 3 of 24) protein_coding-intron (ENSMUSG00000020790.14, intron 1 of 22) 30957 ENSMUSG00000020790.14 ENSMUSG00000020790 ENSMUST00000132889 Ankfy1 protein_coding Interval_144782 chr7 28213929 28214607 + 0 NA Intergenic Intergenic -12090 ENSMUSG00000108968.1 ENSMUSG00000108968 ENSMUST00000207620 Gm45011 TEC Interval_145416 chr7 34617621 34618850 + 0 NA Intergenic Intergenic 19477 ENSMUSG00000108723.1 ENSMUSG00000108723 ENSMUST00000206863 Gm44837 lincRNA Interval_2711 chr1 43737962 43739255 + 0 NA exon (ENSMUSG00000026051.8, exon 3 of 4) protein_coding-exon (ENSMUSG00000026051.8, exon 3 of 4) -4307 ENSMUSG00000100635.1 ENSMUSG00000100635 ENSMUST00000188753 Gm29157 lincRNA Interval_119411 chr4 137526513 137527098 + 0 NA intron (ENSMUSG00000028763.18, intron 5 of 5) protein_coding-intron (ENSMUSG00000028763.18, intron 33 of 96) 4346 ENSMUSG00000028763.18 ENSMUSG00000028763 ENSMUST00000155648 Hspg2 protein_coding Interval_157947 chr8 77133186 77133401 + 0 NA intron (ENSMUSG00000031618.13, intron 1 of 2) protein_coding-intron (ENSMUSG00000031618.13, intron 2 of 7) 13187 ENSMUSG00000089309.1 ENSMUSG00000089309 ENSMUST00000158684 Gm24838 snoRNA Interval_122719 chr5 24873289 24873590 + 0 NA promoter-TSS (ENSMUSG00000087314.1) antisense-promoter-TSS (ENSMUSG00000087314.1) -105 ENSMUSG00000087314.1 ENSMUSG00000087314 ENSMUST00000123610 Prkag2os2 antisense Interval_17185 chr10 74513671 74514024 + 0 NA intron (ENSMUSG00000052613.16, intron 24 of 34) protein_coding-intron (ENSMUSG00000052613.16, intron 23 of 30) -306875 ENSMUSG00000112686.1 ENSMUSG00000112686 ENSMUST00000218638 Gm7034 processed_pseudogene Interval_38296 chr12 76975184 76975531 + 0 NA intron (ENSMUSG00000112857.1, intron 1 of 3) lincRNA-intron (ENSMUSG00000112857.1, intron 1 of 3) 2897 ENSMUSG00000112857.1 ENSMUSG00000112857 ENSMUST00000219581 Gm35041 lincRNA Interval_105364 chr3 85556784 85557033 + 0 NA exon (ENSMUSG00000085527.1, exon 2 of 2) sense_intronic-exon (ENSMUSG00000085527.1, exon 2 of 2) -3519 ENSMUSG00000106422.1 ENSMUSG00000106422 ENSMUST00000199844 Gm42812 lincRNA Interval_173629 chrX 101267833 101268485 + 0 NA promoter-TSS (ENSMUSG00000031304.18) protein_coding-promoter-TSS (ENSMUSG00000031304.18) 31 ENSMUSG00000031304.18 ENSMUSG00000031304 ENSMUST00000127538 Il2rg protein_coding Interval_55375 chr14 86204835 86205602 + 0 NA exon (ENSMUSG00000115836.1, exon 1 of 1) processed_pseudogene-exon (ENSMUSG00000115836.1, exon 1 of 1) 476 ENSMUSG00000115836.1 ENSMUSG00000115836 ENSMUST00000227856 Gm49060 processed_pseudogene Interval_2036 chr1 36037753 36039045 + 0 NA Intergenic Intergenic -7381 ENSMUSG00000102434.1 ENSMUSG00000102434 ENSMUST00000195698 Gm38049 TEC Interval_8658 chr1 146417126 146417545 + 0 NA Intergenic Intergenic -3101 ENSMUSG00000090323.2 ENSMUSG00000090323 ENSMUST00000163646 Gm5263 processed_pseudogene Interval_109026 chr3 135255690 135256126 + 0 NA intron (ENSMUSG00000045328.11, intron 37 of 45) protein_coding-intron (ENSMUSG00000045328.11, intron 37 of 45) -3334 ENSMUSG00000045328.11 ENSMUSG00000045328 ENSMUST00000199497 Cenpe protein_coding Interval_18562 chr10 87698465 87698969 + 0 NA Intergenic Intergenic 10139 ENSMUSG00000112536.1 ENSMUSG00000112536 ENSMUST00000218613 Gm48195 processed_pseudogene Interval_89358 chr2 19727022 19727432 + 0 NA Intergenic Intergenic 35939 ENSMUSG00000077342.1 ENSMUSG00000077342 ENSMUST00000104154 Gm24670 snoRNA Interval_27851 chr11 70393667 70393996 + 0 NA exon (ENSMUSG00000018921.11, exon 16 of 17) protein_coding-exon (ENSMUSG00000018921.11, exon 16 of 17) 16200 ENSMUSG00000018921.11 ENSMUSG00000018921 ENSMUST00000135148 Pelp1 protein_coding Interval_69994 chr17 4163088 4163962 + 0 NA Intergenic Intergenic -41423 ENSMUSG00000116615.1 ENSMUSG00000116615 ENSMUST00000231319 4930548J01Rik processed_transcript Interval_125258 chr5 65706159 65706730 + 0 NA Intergenic Intergenic -24100 ENSMUSG00000107050.1 ENSMUSG00000107050 ENSMUST00000202959 C030017G13Rik TEC Interval_171913 chr9 122476056 122476817 + 0 NA Intergenic Intergenic -2314 ENSMUSG00000110725.1 ENSMUSG00000110725 ENSMUST00000214531 Gm47129 processed_pseudogene Interval_9553 chr1 159342287 159343290 + 0 NA exon (ENSMUSG00000040782.12, exon 1 of 2) protein_coding-exon (ENSMUSG00000040782.12, exon 1 of 2) 2430 ENSMUSG00000105399.1 ENSMUSG00000105399 ENSMUST00000198115 Mir1843b miRNA Interval_169228 chr9 95660608 95661263 + 0 NA intron (ENSMUSG00000015354.8, intron 2 of 8) protein_coding-intron (ENSMUSG00000015354.8, intron 2 of 8) -12464 ENSMUSG00000086585.1 ENSMUSG00000086585 ENSMUST00000126025 Gm16126 antisense Interval_78321 chr18 11961178 11962824 + 0 NA Intergenic Intergenic 48870 ENSMUSG00000117430.1 ENSMUSG00000117430 ENSMUST00000234828 Gm49968 TEC Interval_46979 chr13 73913782 73914038 + 0 NA intron (ENSMUSG00000021569.10, intron 6 of 6) protein_coding-intron (ENSMUSG00000021569.10, intron 12 of 12) 10800 ENSMUSG00000095943.1 ENSMUSG00000095943 ENSMUST00000175516 Gm25197 miRNA Interval_117489 chr4 124110650 124111205 + 0 NA Intergenic Intergenic 168250 ENSMUSG00000103541.1 ENSMUSG00000103541 ENSMUST00000193103 Gm37667 TEC Interval_73250 chr17 35776929 35777133 + 0 NA exon (ENSMUSG00000092171.1, exon 2 of 3) lincRNA-exon (ENSMUSG00000092171.1, exon 2 of 3) 4581 ENSMUSG00000092171.1 ENSMUSG00000092171 ENSMUST00000172874 4833427F10Rik lincRNA Interval_165450 chr9 48215307 48215770 + 0 NA intron (ENSMUSG00000044229.9, intron 1 of 10) protein_coding-intron (ENSMUSG00000044229.9, intron 1 of 10) -56573 ENSMUSG00000110924.1 ENSMUSG00000110924 ENSMUST00000214538 Gm40518 lincRNA Interval_126017 chr5 76868712 76870064 + 0 NA TTS (ENSMUSG00000036377.19) protein_coding-TTS (ENSMUSG00000036377.19) 25690 ENSMUSG00000055923.16 ENSMUSG00000055923 ENSMUST00000134805 Aasdh protein_coding Interval_45396 chr13 54859563 54859985 + 0 NA Intergenic Intergenic -18870 ENSMUSG00000086097.1 ENSMUSG00000086097 ENSMUST00000148974 Gm16250 processed_pseudogene Interval_32720 chr11 109987387 109987983 + 0 NA intron (ENSMUSG00000020620.14, intron 1 of 37) protein_coding-intron (ENSMUSG00000020620.14, intron 1 of 38) 8058 ENSMUSG00000020620.14 ENSMUSG00000020620 ENSMUST00000106669 Abca8b protein_coding Interval_125315 chr5 66153379 66153957 + 0 NA intron (ENSMUSG00000097092.2, intron 2 of 5) antisense-intron (ENSMUSG00000097092.2, intron 2 of 5) 2456 ENSMUSG00000097092.2 ENSMUSG00000097092 ENSMUST00000180652 Gm26725 antisense Interval_68504 chr16 78274682 78275487 + 0 NA promoter-TSS (ENSMUSG00000109841.2) processed_transcript-promoter-TSS (ENSMUSG00000109841.2) 19903 ENSMUSG00000109841.2 ENSMUSG00000109841 ENSMUST00000210555 E330011O21Rik processed_transcript Interval_155203 chr8 27431915 27432877 + 0 NA Intergenic Intergenic -10966 ENSMUSG00000065367.1 ENSMUSG00000065367 ENSMUST00000083433 Gm24410 snRNA Interval_168133 chr9 77427664 77428068 + 0 NA Intergenic Intergenic -28448 ENSMUSG00000099170.1 ENSMUSG00000099170 ENSMUST00000183878 5730403I07Rik lincRNA Interval_143374 chr7 6213244 6215280 + 0 NA intron (ENSMUSG00000034660.8, intron 5 of 5) protein_coding-intron (ENSMUSG00000034660.8, intron 5 of 5) 11461 ENSMUSG00000034660.8 ENSMUSG00000034660 ENSMUST00000130076 Galp protein_coding Interval_8864 chr1 151629938 151630186 + 0 NA intron (ENSMUSG00000026483.13, intron 1 of 13) protein_coding-intron (ENSMUSG00000026483.13, intron 1 of 14) 58689 ENSMUSG00000026483.13 ENSMUSG00000026483 ENSMUST00000086267 Fam129a protein_coding Interval_103448 chr3 41618554 41620950 + 0 NA Intergenic Intergenic 29498 ENSMUSG00000102436.1 ENSMUSG00000102436 ENSMUST00000193690 Gm38047 TEC Interval_110999 chr4 11117085 11117527 + 0 NA Intergenic Intergenic -5499 ENSMUSG00000086765.7 ENSMUSG00000086765 ENSMUST00000142297 Gm11827 lincRNA Interval_158172 chr8 79502251 79502463 + 0 NA Intergenic Intergenic -4179 ENSMUSG00000109591.1 ENSMUSG00000109591 ENSMUST00000209221 Gm8077 processed_pseudogene Interval_126487 chr5 88915067 88915333 + 0 NA intron (ENSMUSG00000060961.16, intron 1 of 25) protein_coding-intron (ENSMUSG00000060961.16, intron 1 of 24) 28714 ENSMUSG00000060961.16 ENSMUSG00000060961 ENSMUST00000134303 Slc4a4 protein_coding Interval_84591 chr19 13899196 13900087 + 0 NA Intergenic Intergenic -1713 ENSMUSG00000059105.4 ENSMUSG00000059105 ENSMUST00000078282 Olfr1504 protein_coding Interval_86399 chr19 40240577 40241568 + 0 NA intron (ENSMUSG00000055044.12, intron 5 of 5) protein_coding-intron (ENSMUSG00000055044.12, intron 4 of 6) -10267 ENSMUSG00000055044.12 ENSMUSG00000055044 ENSMUST00000182636 Pdlim1 protein_coding Interval_156393 chr8 47900338 47901181 + 0 NA exon (ENSMUSG00000031563.8, exon 3 of 23) protein_coding-exon (ENSMUSG00000031563.8, exon 3 of 23) 1577 ENSMUSG00000064519.1 ENSMUSG00000064519 ENSMUST00000082585 n-R5s97 rRNA Interval_93005 chr2 69519899 69520523 + 0 NA intron (ENSMUSG00000027070.14, intron 14 of 24) protein_coding-intron (ENSMUSG00000027070.14, intron 14 of 78) -11066 ENSMUSG00000027070.14 ENSMUSG00000027070 ENSMUST00000092551 Lrp2 protein_coding Interval_76292 chr17 78796101 78796397 + 0 NA promoter-TSS (ENSMUSG00000039414.10) protein_coding-promoter-TSS (ENSMUSG00000039414.10) -27185 ENSMUSG00000039414.10 ENSMUSG00000039414 ENSMUST00000232917 Heatr5b protein_coding Interval_17594 chr10 78054819 78056740 + 0 NA intron (ENSMUSG00000000730.13, intron 1 of 4) protein_coding-intron (ENSMUSG00000000730.13, intron 9 of 12) 5820 ENSMUSG00000000730.13 ENSMUSG00000000730 ENSMUST00000123940 Dnmt3l protein_coding Interval_86348 chr19 38928160 38931510 + 0 NA Intergenic Intergenic -1555 ENSMUSG00000025001.11 ENSMUSG00000025001 ENSMUST00000127968 Hells protein_coding Interval_71897 chr17 26857532 26858096 + 0 NA Intergenic Intergenic -3607 ENSMUSG00000092539.2 ENSMUSG00000092539 ENSMUST00000172664 Gm20468 lincRNA Interval_40843 chr12 108792204 108794760 + 0 NA promoter-TSS (ENSMUSG00000114045.1) TEC-promoter-TSS (ENSMUSG00000114045.1) -739 ENSMUSG00000114045.1 ENSMUSG00000114045 ENSMUST00000223001 Gm34220 TEC Interval_95716 chr2 114714419 114714638 + 0 NA Intergenic Intergenic 6416 ENSMUSG00000082997.1 ENSMUSG00000082997 ENSMUST00000119253 Gm13975 processed_pseudogene Interval_131757 chr5 139697155 139697670 + 0 NA Intergenic Intergenic -4235 ENSMUSG00000104637.1 ENSMUSG00000104637 ENSMUST00000198319 Gm42424 processed_pseudogene Interval_126102 chr5 77398232 77398984 + 0 NA intron (ENSMUSG00000036256.13, intron 1 of 4) protein_coding-intron (ENSMUSG00000036256.13, intron 1 of 4) 9432 ENSMUSG00000036256.13 ENSMUSG00000036256 ENSMUST00000163898 Igfbp7 protein_coding Interval_160963 chr8 116475390 116475777 + 0 NA Intergenic Intergenic -13603 ENSMUSG00000110700.1 ENSMUSG00000110700 ENSMUST00000212720 Gm5357 processed_pseudogene Interval_115468 chr4 99198283 99201617 + 0 NA intron (ENSMUSG00000028550.15, intron 1 of 10) protein_coding-intron (ENSMUSG00000028550.15, intron 1 of 10) 5803 ENSMUSG00000028550.15 ENSMUSG00000028550 ENSMUST00000152121 Atg4c protein_coding Interval_83132 chr18 81916144 81916835 + 0 NA exon (ENSMUSG00000117817.1, exon 1 of 2) lincRNA-exon (ENSMUSG00000117817.1, exon 1 of 2) 239 ENSMUSG00000117817.1 ENSMUSG00000117817 ENSMUST00000235452 Gm50292 lincRNA Interval_23595 chr11 23652703 23654385 + 0 NA intron (ENSMUSG00000020283.5, intron 1 of 2) protein_coding-intron (ENSMUSG00000020283.5, intron 2 of 3) 12129 ENSMUSG00000020283.5 ENSMUSG00000020283 ENSMUST00000146533 Pex13 protein_coding Interval_46197 chr13 62436944 62437418 + 0 NA Intergenic Intergenic -2791 ENSMUSG00000113812.1 ENSMUSG00000113812 ENSMUST00000220732 Gm48699 TEC Interval_69492 chr16 93848599 93849607 + 0 NA intron (ENSMUSG00000039456.10, intron 5 of 13) protein_coding-intron (ENSMUSG00000039456.10, intron 5 of 16) -11410 ENSMUSG00000039456.10 ENSMUSG00000039456 ENSMUST00000232639 Morc3 protein_coding Interval_80770 chr18 46947560 46947942 + 0 NA Intergenic Intergenic -5575 ENSMUSG00000117411.1 ENSMUSG00000117411 ENSMUST00000234725 Gm3744 processed_pseudogene Interval_172231 chrX 11423366 11424128 + 0 NA Intergenic Intergenic 95925 ENSMUSG00000069038.2 ENSMUSG00000069038 ENSMUST00000091180 H2al1j protein_coding Interval_17156 chr10 72937635 72938400 + 0 NA Intergenic Intergenic 11775 ENSMUSG00000112168.1 ENSMUSG00000112168 ENSMUST00000219415 Gm34776 lincRNA Interval_67266 chr16 45095527 45095737 + 0 NA TTS (ENSMUSG00000022665.15) protein_coding-TTS (ENSMUSG00000022665.15) 2042 ENSMUSG00000022665.15 ENSMUSG00000022665 ENSMUST00000061050 Ccdc80 protein_coding Interval_111231 chr4 15265238 15266679 + 0 NA exon (ENSMUSG00000043252.8, exon 1 of 3) protein_coding-exon (ENSMUSG00000043252.8, exon 1 of 3) 127 ENSMUSG00000043252.8 ENSMUSG00000043252 ENSMUST00000062684 Tmem64 protein_coding Interval_154625 chr8 22133926 22135071 + 0 NA intron (ENSMUSG00000031478.16, intron 10 of 14) protein_coding-intron (ENSMUSG00000031478.16, intron 11 of 15) -26605 ENSMUSG00000037738.11 ENSMUSG00000037738 ENSMUST00000213644 Nek5 protein_coding Interval_66229 chr16 32457942 32458709 + 0 NA intron (ENSMUSG00000005615.15, intron 3 of 8) protein_coding-intron (ENSMUSG00000005615.15, intron 3 of 8) -2176 ENSMUSG00000116714.1 ENSMUSG00000116714 ENSMUST00000232596 2210020O09Rik antisense Interval_137041 chr6 66910473 66911558 + 0 NA intron (ENSMUSG00000036402.13, intron 1 of 3) protein_coding-intron (ENSMUSG00000036402.13, intron 1 of 4) 14124 ENSMUSG00000036402.13 ENSMUSG00000036402 ENSMUST00000204862 Gng12 protein_coding Interval_36081 chr12 35313487 35314987 + 0 NA Intergenic Intergenic 5346 ENSMUSG00000105488.1 ENSMUSG00000105488 ENSMUST00000199843 Gm44396 miRNA Interval_32791 chr11 110677918 110678435 + 0 NA Intergenic Intergenic 133669 ENSMUSG00000085985.1 ENSMUSG00000085985 ENSMUST00000144689 Gm11682 lincRNA Interval_123462 chr5 32690570 32690907 + 0 NA Intergenic Intergenic -5011 ENSMUSG00000118435.2 ENSMUSG00000118435 ENSMUST00000238745 Gm50482 unitary_pseudogene Interval_125272 chr5 65799460 65800251 + 0 NA intron (ENSMUSG00000037795.14, intron 7 of 13) protein_coding-intron (ENSMUSG00000037795.14, intron 7 of 17) 21841 ENSMUSG00000106682.1 ENSMUSG00000106682 ENSMUST00000200774 Gm42648 TEC Interval_51445 chr14 27621508 27623991 + 0 NA promoter-TSS (ENSMUSG00000040640.11) protein_coding-promoter-TSS (ENSMUSG00000040640.11) -70591 ENSMUSG00000114482.1 ENSMUSG00000114482 ENSMUST00000225617 Gm7604 processed_pseudogene Interval_167795 chr9 72749396 72750737 + 0 NA TTS (ENSMUSG00000032216.15) protein_coding-TTS (ENSMUSG00000032216.15) 21926 ENSMUSG00000102411.1 ENSMUSG00000102411 ENSMUST00000194508 Gm36936 TEC Interval_68391 chr16 75617774 75618219 + 0 NA Intergenic Intergenic 25105 ENSMUSG00000032940.16 ENSMUSG00000032940 ENSMUST00000114253 Rbm11 protein_coding Interval_51145 chr14 24143126 24143775 + 0 NA TTS (ENSMUSG00000021782.14) protein_coding-TTS (ENSMUSG00000021782.14) 7096 ENSMUSG00000021782.14 ENSMUSG00000021782 ENSMUST00000169880 Dlg5 protein_coding Interval_156081 chr8 43710647 43711116 + 0 NA promoter-TSS (ENSMUSG00000079058.3) protein_coding-promoter-TSS (ENSMUSG00000079058.3) 7402 ENSMUSG00000110168.1 ENSMUSG00000110168 ENSMUST00000210747 Gm45488 antisense Interval_93553 chr2 74086849 74087104 + 0 NA Intergenic Intergenic 15366 ENSMUSG00000085387.1 ENSMUSG00000085387 ENSMUST00000151443 A630050E04Rik lincRNA Interval_130798 chr5 130656188 130656416 + 0 NA intron (ENSMUSG00000060371.12, intron 3 of 5) protein_coding-intron (ENSMUSG00000060371.12, intron 4 of 6) -37751 ENSMUSG00000106849.1 ENSMUSG00000106849 ENSMUST00000201334 Gm43418 TEC Interval_159692 chr8 97551442 97552434 + 0 NA Intergenic Intergenic 14654 ENSMUSG00000098116.1 ENSMUSG00000098116 ENSMUST00000182678 Gm7191 processed_pseudogene Interval_23082 chr11 19823211 19823723 + 0 NA Intergenic Intergenic 39815 ENSMUSG00000081820.1 ENSMUSG00000081820 ENSMUST00000120073 Gm12029 processed_pseudogene Interval_138080 chr6 85020667 85021399 + 0 NA intron (ENSMUSG00000033769.16, intron 1 of 2) protein_coding-intron (ENSMUSG00000033769.16, intron 1 of 16) -41541 ENSMUSG00000107629.1 ENSMUSG00000107629 ENSMUST00000203336 Gm44011 processed_pseudogene Interval_72773 chr17 32073295 32073958 + 0 NA Intergenic Intergenic 16629 ENSMUSG00000002791.17 ENSMUSG00000002791 ENSMUST00000235497 Pdxk-ps transcribed_unprocessed_pseudogene Interval_166862 chr9 63341915 63342517 + 0 NA intron (ENSMUSG00000058444.8, intron 4 of 4) protein_coding-intron (ENSMUSG00000058444.8, intron 4 of 21) 35661 ENSMUSG00000058444.8 ENSMUSG00000058444 ENSMUST00000216999 Map2k5 protein_coding Interval_92293 chr2 58477105 58477535 + 0 NA TTS (ENSMUSG00000026836.15) protein_coding-TTS (ENSMUSG00000026836.15) 7204 ENSMUSG00000091922.1 ENSMUSG00000091922 ENSMUST00000167423 Gm17409 TEC Interval_88192 chr19 60554870 60556273 + 0 NA intron (ENSMUSG00000033417.16, intron 3 of 7) protein_coding-intron (ENSMUSG00000033417.16, intron 3 of 8) -18022 ENSMUSG00000033417.16 ENSMUSG00000033417 ENSMUST00000237682 Cacul1 protein_coding Interval_142073 chr6 136966681 136967855 + 0 NA exon (ENSMUSG00000064330.9, exon 4 of 4) protein_coding-exon (ENSMUSG00000064330.9, exon 4 of 4) -19328 ENSMUSG00000107734.1 ENSMUSG00000107734 ENSMUST00000203175 Gm30055 TEC Interval_34538 chr12 4963979 4964746 + 0 NA intron (ENSMUSG00000052812.5, intron 13 of 30) protein_coding-intron (ENSMUSG00000052812.5, intron 13 of 30) -17690 ENSMUSG00000052812.5 ENSMUSG00000052812 ENSMUST00000220408 Atad2b protein_coding Interval_53618 chr14 60144845 60145049 + 0 NA intron (ENSMUSG00000021983.16, intron 1 of 6) protein_coding-intron (ENSMUSG00000021983.16, intron 1 of 6) 3884 ENSMUSG00000075288.2 ENSMUSG00000075288 ENSMUST00000100019 Gm6913 processed_pseudogene Interval_60861 chr15 77207088 77207656 + 0 NA intron (ENSMUSG00000033565.18, intron 1 of 3) protein_coding-intron (ENSMUSG00000033565.18, intron 2 of 12) -29108 ENSMUSG00000116185.1 ENSMUSG00000116185 ENSMUST00000230993 Gm49411 TEC Interval_70415 chr17 9944491 9944777 + 0 NA Intergenic Intergenic -3203 ENSMUSG00000117206.1 ENSMUSG00000117206 ENSMUST00000233132 Gm49809 processed_pseudogene Interval_34915 chr12 13358641 13359108 + 0 NA intron (ENSMUSG00000020576.10, intron 23 of 51) protein_coding-intron (ENSMUSG00000020576.10, intron 23 of 51) 66843 ENSMUSG00000113476.1 ENSMUSG00000113476 ENSMUST00000220829 Gm48309 TEC Interval_31525 chr11 101170324 101172433 + 0 NA promoter-TSS (ENSMUSG00000035172.15) protein_coding-promoter-TSS (ENSMUSG00000035172.15) -61 ENSMUSG00000035172.15 ENSMUSG00000035172 ENSMUST00000123864 Plekhh3 protein_coding Interval_85783 chr19 31100611 31101190 + 0 NA intron (ENSMUSG00000052920.16, intron 3 of 17) protein_coding-intron (ENSMUSG00000052920.16, intron 3 of 17) -11646 ENSMUSG00000118011.1 ENSMUSG00000118011 ENSMUST00000235353 Gm50266 processed_pseudogene Interval_123896 chr5 36364387 36364981 + 0 NA intron (ENSMUSG00000029093.14, intron 1 of 4) protein_coding-intron (ENSMUSG00000029093.14, intron 1 of 26) 1234 ENSMUSG00000029093.14 ENSMUSG00000029093 ENSMUST00000141508 Sorcs2 protein_coding Interval_4291 chr1 72414538 72415057 + 0 NA Intergenic Intergenic -44702 ENSMUSG00000085812.1 ENSMUSG00000085812 ENSMUST00000146593 Gm15843 processed_pseudogene Interval_117962 chr4 127353828 127354207 + 0 NA promoter-TSS (ENSMUSG00000046623.8) protein_coding-promoter-TSS (ENSMUSG00000046623.8) 64 ENSMUSG00000046623.8 ENSMUSG00000046623 ENSMUST00000060419 Gjb4 protein_coding Interval_171021 chr9 113779862 113780072 + 0 NA intron (ENSMUSG00000033392.16, intron 6 of 10) protein_coding-intron (ENSMUSG00000033392.16, intron 6 of 15) -3669 ENSMUSG00000087992.1 ENSMUSG00000087992 ENSMUST00000157367 Gm25059 snoRNA Interval_105000 chr3 79612803 79613207 + 0 NA intron (ENSMUSG00000027809.14, intron 8 of 12) protein_coding-intron (ENSMUSG00000027809.14, intron 8 of 12) -1179 ENSMUSG00000102370.1 ENSMUSG00000102370 ENSMUST00000195767 Gm37973 TEC Interval_162822 chr9 9590436 9592025 + 0 NA Intergenic Intergenic -7923 ENSMUSG00000111061.1 ENSMUSG00000111061 ENSMUST00000217005 Gm46102 lincRNA Interval_109247 chr3 138274511 138275094 + 0 NA intron (ENSMUSG00000074207.10, intron 2 of 5) protein_coding-intron (ENSMUSG00000074207.10, intron 2 of 5) 13811 ENSMUSG00000074207.10 ENSMUSG00000074207 ENSMUST00000159159 Adh1 protein_coding Interval_83580 chr18 90100506 90100686 + 0 NA Intergenic Intergenic -81517 ENSMUSG00000118035.1 ENSMUSG00000118035 ENSMUST00000237041 Gm6173 processed_pseudogene Interval_21845 chr11 4709981 4710641 + 0 NA intron (ENSMUSG00000009076.10, intron 1 of 5) protein_coding-intron (ENSMUSG00000009076.10, intron 1 of 5) 5603 ENSMUSG00000009076.10 ENSMUSG00000009076 ENSMUST00000141970 Zmat5 protein_coding Interval_91751 chr2 49201585 49201816 + 0 NA intron (ENSMUSG00000036792.12, intron 5 of 14) protein_coding-intron (ENSMUSG00000036792.12, intron 6 of 10) 16682 ENSMUSG00000080937.1 ENSMUSG00000080937 ENSMUST00000118659 Gm13510 processed_pseudogene Interval_21616 chr11 3251003 3251402 + 0 NA intron (ENSMUSG00000020457.13, intron 2 of 2) protein_coding-intron (ENSMUSG00000020457.13, intron 8 of 8) 15190 ENSMUSG00000020457.13 ENSMUSG00000020457 ENSMUST00000132159 Drg1 protein_coding Interval_113158 chr4 48687584 48688077 + 0 NA Intergenic Intergenic 12674 ENSMUSG00000080850.1 ENSMUSG00000080850 ENSMUST00000117162 Gm12439 processed_pseudogene Interval_10185 chr1 166870701 166870887 + 0 NA Intergenic Intergenic -71955 ENSMUSG00000103073.1 ENSMUSG00000103073 ENSMUST00000195591 Gm37904 processed_pseudogene Interval_60463 chr15 73982138 73982689 + 0 NA Intergenic Intergenic 18500 ENSMUSG00000116256.1 ENSMUSG00000116256 ENSMUST00000230277 Gm32405 lincRNA Interval_14205 chr10 28816259 28816932 + 0 NA intron (ENSMUSG00000049109.15, intron 5 of 5) protein_coding-intron (ENSMUSG00000049109.15, intron 4 of 5) -9839 ENSMUSG00000112111.1 ENSMUSG00000112111 ENSMUST00000218178 Gm47834 processed_pseudogene Interval_149545 chr7 99476307 99477724 + 0 NA TTS (ENSMUSG00000030744.13) protein_coding-TTS (ENSMUSG00000030744.13) 2692 ENSMUSG00000064966.1 ENSMUSG00000064966 ENSMUST00000083032 Snord15b snoRNA Interval_5385 chr1 88331892 88332312 + 0 NA intron (ENSMUSG00000036251.16, intron 6 of 24) protein_coding-intron (ENSMUSG00000036251.16, intron 7 of 25) 13189 ENSMUSG00000036251.16 ENSMUSG00000036251 ENSMUST00000171176 Trpm8 protein_coding Interval_52462 chr14 46711387 46711728 + 0 NA Intergenic Intergenic 34842 ENSMUSG00000115690.1 ENSMUSG00000115690 ENSMUST00000226531 Gm48924 lincRNA Interval_116841 chr4 117630056 117630268 + 0 NA intron (ENSMUSG00000033423.16, intron 6 of 7) protein_coding-intron (ENSMUSG00000033423.16, intron 7 of 8) 52091 ENSMUSG00000009640.11 ENSMUSG00000009640 ENSMUST00000127750 Dmap1 protein_coding Interval_81684 chr18 63420805 63421246 + 0 NA intron (ENSMUSG00000097980.2, intron 1 of 1) lincRNA-intron (ENSMUSG00000097980.2, intron 2 of 2) 3771 ENSMUSG00000097980.2 ENSMUSG00000097980 ENSMUST00000237281 Gm26972 lincRNA Interval_32471 chr11 107724415 107724690 + 0 NA Intergenic Intergenic -8030 ENSMUSG00000020722.5 ENSMUSG00000020722 ENSMUST00000021065 Cacng1 protein_coding Interval_118013 chr4 127987897 127990084 + 0 NA intron (ENSMUSG00000028804.20, intron 1 of 70) protein_coding-intron (ENSMUSG00000028804.20, intron 1 of 12) -18039 ENSMUSG00000028813.2 ENSMUSG00000028813 ENSMUST00000030614 CK137956 protein_coding Interval_160141 chr8 106682748 106683842 + 0 NA intron (ENSMUSG00000041949.6, intron 1 of 13) protein_coding-intron (ENSMUSG00000041949.6, intron 1 of 17) 180 ENSMUSG00000041949.6 ENSMUSG00000041949 ENSMUST00000211979 Tango6 protein_coding Interval_169744 chr9 100906159 100906483 + 0 NA intron (ENSMUSG00000037286.15, intron 14 of 25) protein_coding-intron (ENSMUSG00000037286.15, intron 21 of 32) 29230 ENSMUSG00000103624.1 ENSMUSG00000103624 ENSMUST00000193413 Gm3081 TEC Interval_32597 chr11 109005906 109006289 + 0 NA Intergenic Intergenic -1554 ENSMUSG00000081392.1 ENSMUSG00000081392 ENSMUST00000119655 Gm11668 processed_pseudogene Interval_53869 chr14 62974907 62975289 + 0 NA TTS (ENSMUSG00000114403.1) processed_pseudogene-TTS (ENSMUSG00000114403.1) 1308 ENSMUSG00000114403.1 ENSMUSG00000114403 ENSMUST00000225378 Gm21021 processed_pseudogene Interval_124832 chr5 55999599 55999808 + 0 NA Intergenic Intergenic -157635 ENSMUSG00000105685.1 ENSMUSG00000105685 ENSMUST00000198120 Gm43315 processed_pseudogene Interval_60599 chr15 75603417 75603651 + 0 NA Intergenic Intergenic 6866 ENSMUSG00000022579.10 ENSMUSG00000022579 ENSMUST00000186934 Gpihbp1 protein_coding Interval_22424 chr11 9958999 9959512 + 0 NA Intergenic Intergenic -221634 ENSMUSG00000081629.1 ENSMUSG00000081629 ENSMUST00000117907 Eif3s6-ps1 processed_pseudogene Interval_76815 chr17 84250635 84250864 + 0 NA intron (ENSMUSG00000024251.10, intron 6 of 12) protein_coding-intron (ENSMUSG00000024251.10, intron 31 of 37) 36998 ENSMUSG00000065732.1 ENSMUSG00000065732 ENSMUST00000083798 Gm24492 snRNA Interval_148362 chr7 80771020 80771425 + 0 NA intron (ENSMUSG00000030536.10, intron 2 of 13) protein_coding-intron (ENSMUSG00000030536.10, intron 2 of 37) 19400 ENSMUSG00000108321.1 ENSMUSG00000108321 ENSMUST00000205608 Gm44649 antisense Interval_21946 chr11 5367152 5367929 + 0 NA intron (ENSMUSG00000041961.14, intron 1 of 3) protein_coding-intron (ENSMUSG00000041961.14, intron 1 of 8) 14200 ENSMUSG00000041961.14 ENSMUSG00000041961 ENSMUST00000143746 Znrf3 protein_coding Interval_125211 chr5 65386591 65388146 + 0 NA TTS (ENSMUSG00000047215.14) protein_coding-TTS (ENSMUSG00000047215.14) 3618 ENSMUSG00000047215.14 ENSMUSG00000047215 ENSMUST00000128074 Rpl9 protein_coding Interval_116067 chr4 107373958 107374379 + 0 NA exon (ENSMUSG00000028614.14, exon 3 of 17) protein_coding-exon (ENSMUSG00000028614.14, exon 3 of 17) -6917 ENSMUSG00000028614.14 ENSMUSG00000028614 ENSMUST00000132950 Ndc1 protein_coding Interval_19715 chr10 108270231 108271411 + 0 NA intron (ENSMUSG00000019907.10, intron 12 of 14) protein_coding-intron (ENSMUSG00000019907.10, intron 22 of 25) 21227 ENSMUSG00000019907.10 ENSMUSG00000019907 ENSMUST00000219559 Ppp1r12a protein_coding Interval_14120 chr10 27698064 27698299 + 0 NA exon (ENSMUSG00000112610.1, exon 1 of 5) lincRNA-exon (ENSMUSG00000112610.1, exon 1 of 5) 146 ENSMUSG00000112610.1 ENSMUSG00000112610 ENSMUST00000218769 Gm30165 lincRNA Interval_152844 chr7 138741973 138742287 + 0 NA Intergenic Intergenic 41227 ENSMUSG00000109802.1 ENSMUSG00000109802 ENSMUST00000211166 Gm30808 lincRNA Interval_152842 chr7 138668358 138668732 + 0 NA Intergenic Intergenic -32358 ENSMUSG00000109802.1 ENSMUSG00000109802 ENSMUST00000211166 Gm30808 lincRNA Interval_134770 chr6 31345369 31346094 + 0 NA Intergenic Intergenic -11012 ENSMUSG00000086931.1 ENSMUSG00000086931 ENSMUST00000156115 Gm14532 lincRNA Interval_26893 chr11 61348885 61349986 + 0 NA intron (ENSMUSG00000010122.14, intron 16 of 17) protein_coding-intron (ENSMUSG00000010122.14, intron 15 of 16) -6851 ENSMUSG00000069855.9 ENSMUSG00000069855 ENSMUST00000147450 Slc47a2 protein_coding Interval_171760 chr9 120781849 120782177 + 0 NA Intergenic Intergenic 9772 ENSMUSG00000064397.1 ENSMUSG00000064397 ENSMUST00000082463 Gm23624 misc_RNA Interval_32073 chr11 105111837 105113500 + 0 NA promoter-TSS (ENSMUSG00000020690.12) protein_coding-promoter-TSS (ENSMUSG00000020690.12) 12 ENSMUSG00000020690.12 ENSMUSG00000020690 ENSMUST00000154543 Efcab3 protein_coding Interval_9436 chr1 157081565 157082240 + 0 NA Intergenic Intergenic 26747 ENSMUSG00000026592.13 ENSMUSG00000026592 ENSMUST00000148649 Tex35 protein_coding Interval_143505 chr7 11040677 11040935 + 0 NA Intergenic Intergenic 7036 ENSMUSG00000109952.1 ENSMUSG00000109952 ENSMUST00000209891 Gm45395 processed_pseudogene Interval_91163 chr2 35604293 35605007 + 0 NA intron (ENSMUSG00000026883.17, intron 1 of 16) protein_coding-intron (ENSMUSG00000026883.17, intron 1 of 16) -46165 ENSMUSG00000086555.2 ENSMUSG00000086555 ENSMUST00000134679 Gm13446 processed_transcript Interval_126340 chr5 86823998 86824386 + 0 NA exon (ENSMUSG00000035851.14, exon 1 of 2) protein_coding-exon (ENSMUSG00000035851.14, exon 1 of 2) 17781 ENSMUSG00000035851.14 ENSMUSG00000035851 ENSMUST00000123625 Ythdc1 protein_coding Interval_170797 chr9 110846510 110846739 + 0 NA intron (ENSMUSG00000049719.14, intron 1 of 4) protein_coding-intron (ENSMUSG00000049719.14, intron 1 of 4) 2118 ENSMUSG00000049719.14 ENSMUSG00000049719 ENSMUST00000119427 Prss46 protein_coding Interval_121332 chr4 155042661 155043848 + 0 NA promoter-TSS (ENSMUSG00000029055.17) protein_coding-promoter-TSS (ENSMUSG00000029055.17) 1208 ENSMUSG00000073686.2 ENSMUSG00000073686 ENSMUST00000097750 Gm10564 antisense Interval_73574 chr17 40625875 40626082 + 0 NA Intergenic Intergenic -6097 ENSMUSG00000093957.1 ENSMUSG00000093957 ENSMUST00000177574 Esp3 protein_coding Interval_15247 chr10 43705770 43706591 + 0 NA promoter-TSS (ENSMUSG00000075184.3) lincRNA-promoter-TSS (ENSMUSG00000075184.3) -14352 ENSMUSG00000111575.1 ENSMUSG00000111575 ENSMUST00000214822 Gm47926 lincRNA Interval_110102 chr3 153305280 153305832 + 0 NA intron (ENSMUSG00000052544.9, intron 3 of 4) protein_coding-intron (ENSMUSG00000052544.9, intron 2 of 2) -6907 ENSMUSG00000105023.1 ENSMUSG00000105023 ENSMUST00000197231 1700012D16Rik sense_intronic Interval_75579 chr17 68608006 68608419 + 0 NA intron (ENSMUSG00000041565.17, intron 14 of 15) protein_coding-intron (ENSMUSG00000041565.17, intron 14 of 19) -90699 ENSMUSG00000117274.1 ENSMUSG00000117274 ENSMUST00000233538 Gm17921 processed_pseudogene Interval_38032 chr12 74293489 74294262 + 0 NA intron (ENSMUSG00000071265.10, intron 3 of 4) transcribed_unitary_pseudogene-intron (ENSMUSG00000071265.10, intron 1 of 2) -2793 ENSMUSG00000029878.6 ENSMUSG00000029878 ENSMUST00000072100 Dbpht2 lincRNA Interval_164364 chr9 35962184 35962494 + 0 NA intron (ENSMUSG00000099201.8, intron 2 of 3) lincRNA-intron (ENSMUSG00000099201.8, intron 2 of 3) 49219 ENSMUSG00000099201.8 ENSMUSG00000099201 ENSMUST00000184873 Gm27187 lincRNA Interval_23449 chr11 22693532 22694689 + 0 NA Intergenic Intergenic 38876 ENSMUSG00000085979.1 ENSMUSG00000085979 ENSMUST00000143643 Gm12055 lincRNA Interval_130873 chr5 132877631 132878277 + 0 NA Intergenic Intergenic 76276 ENSMUSG00000088123.1 ENSMUSG00000088123 ENSMUST00000157498 Gm25722 misc_RNA Interval_40604 chr12 105981316 105982583 + 0 NA Intergenic Intergenic -43858 ENSMUSG00000021115.15 ENSMUSG00000021115 ENSMUST00000220629 Vrk1 protein_coding Interval_58954 chr15 40836441 40836648 + 0 NA intron (ENSMUSG00000022306.9, intron 3 of 7) protein_coding-intron (ENSMUSG00000022306.9, intron 3 of 7) -71021 ENSMUSG00000116397.1 ENSMUSG00000116397 ENSMUST00000230162 Gm49525 TEC Interval_124493 chr5 49064777 49065119 + 0 NA intron (ENSMUSG00000029088.16, intron 1 of 8) protein_coding-intron (ENSMUSG00000029088.16, intron 1 of 8) -5055 ENSMUSG00000105620.1 ENSMUSG00000105620 ENSMUST00000200089 Gm43047 TEC Interval_162780 chr9 9048941 9050131 + 0 NA intron (ENSMUSG00000050730.17, intron 5 of 15) protein_coding-intron (ENSMUSG00000050730.17, intron 5 of 22) 77745 ENSMUSG00000078117.2 ENSMUSG00000078117 ENSMUST00000104915 Gm16485 TEC Interval_164617 chr9 40102011 40102425 + 0 NA promoter-TSS (ENSMUSG00000045812.5) protein_coding-promoter-TSS (ENSMUSG00000045812.5) -8623 ENSMUSG00000044205.7 ENSMUSG00000044205 ENSMUST00000050996 Olfr983 protein_coding Interval_146036 chr7 43354644 43355850 + 0 NA intron (ENSMUSG00000039013.16, intron 5 of 7) protein_coding-intron (ENSMUSG00000039013.16, intron 6 of 9) 3725 ENSMUSG00000039013.16 ENSMUSG00000039013 ENSMUST00000121494 Siglecf protein_coding Interval_55789 chr14 100187874 100188309 + 0 NA intron (ENSMUSG00000072294.5, intron 1 of 7) protein_coding-intron (ENSMUSG00000072294.5, intron 1 of 3) -25098 ENSMUSG00000054391.12 ENSMUSG00000054391 ENSMUST00000145018 4930517O19Rik antisense Interval_45754 chr13 57732340 57734161 + 0 NA intron (ENSMUSG00000056222.15, intron 2 of 10) protein_coding-intron (ENSMUSG00000056222.15, intron 1 of 9) 175082 ENSMUSG00000056222.15 ENSMUSG00000056222 ENSMUST00000185905 Spock1 protein_coding Interval_104994 chr3 79576027 79577053 + 0 NA Intergenic Intergenic -6048 ENSMUSG00000103564.1 ENSMUSG00000103564 ENSMUST00000194355 Gm35067 processed_pseudogene Interval_143658 chr7 14034518 14035237 + 0 NA Intergenic Intergenic 28219 ENSMUSG00000099744.1 ENSMUSG00000099744 ENSMUST00000186718 Tmem167-ps3 processed_pseudogene Interval_96255 chr2 121003434 121003830 + 0 NA promoter-TSS (ENSMUSG00000065883.2) snoRNA-promoter-TSS (ENSMUSG00000065883.2) -457 ENSMUSG00000065883.2 ENSMUSG00000065883 ENSMUST00000083949 Gm22865 snoRNA Interval_18616 chr10 88503209 88504647 + 0 NA promoter-TSS (ENSMUSG00000060002.14) protein_coding-promoter-TSS (ENSMUSG00000060002.14) -27488 ENSMUSG00000060002.14 ENSMUSG00000060002 ENSMUST00000073783 Chpt1 protein_coding Interval_137162 chr6 68751630 68752311 + 0 NA Intergenic Intergenic 3623 ENSMUSG00000076531.1 ENSMUSG00000076531 ENSMUST00000103332 Igkv4-92 IG_V_gene Interval_61516 chr15 82106787 82107403 + 0 NA exon (ENSMUSG00000068117.10, exon 21 of 31) protein_coding-exon (ENSMUSG00000068117.10, exon 21 of 31) -20883 ENSMUSG00000068114.7 ENSMUSG00000068114 ENSMUST00000229384 Ccdc134 protein_coding Interval_150711 chr7 113654624 113655697 + 0 NA Intergenic Intergenic 11856 ENSMUSG00000089467.1 ENSMUSG00000089467 ENSMUST00000158842 Gm23700 miRNA Interval_808 chr1 11564762 11566031 + 0 NA intron (ENSMUSG00000057715.13, intron 5 of 12) protein_coding-intron (ENSMUSG00000057715.13, intron 5 of 13) -13910 ENSMUSG00000057715.13 ENSMUSG00000057715 ENSMUST00000191437 A830018L16Rik protein_coding Interval_126137 chr5 78238408 78238627 + 0 NA Intergenic Intergenic -235368 ENSMUSG00000044058.8 ENSMUSG00000044058 ENSMUST00000174153 Mthfr-ps1 processed_pseudogene Interval_23955 chr11 28811634 28813153 + 0 NA intron (ENSMUSG00000085510.1, intron 3 of 3) lincRNA-intron (ENSMUSG00000085510.1, intron 3 of 3) 48665 ENSMUSG00000065415.1 ENSMUSG00000065415 ENSMUST00000083481 Mir217 miRNA Interval_117719 chr4 125744229 125744654 + 0 NA Intergenic Intergenic 177976 ENSMUSG00000085562.7 ENSMUSG00000085562 ENSMUST00000144539 2610028E06Rik lincRNA Interval_29457 chr11 84107217 84107416 + 0 NA intron (ENSMUSG00000018651.14, intron 5 of 15) protein_coding-intron (ENSMUSG00000018651.14, intron 5 of 15) -22384 ENSMUSG00000020532.18 ENSMUSG00000020532 ENSMUST00000183887 Acaca protein_coding Interval_103786 chr3 52955335 52957031 + 0 NA Intergenic Intergenic 4183 ENSMUSG00000103886.1 ENSMUSG00000103886 ENSMUST00000194234 Gm37007 processed_pseudogene Interval_129028 chr5 116867568 116868606 + 0 NA Intergenic Intergenic -37567 ENSMUSG00000106909.1 ENSMUSG00000106909 ENSMUST00000201752 Gm43122 lincRNA Interval_6031 chr1 94241827 94242205 + 0 NA Intergenic Intergenic 37599 ENSMUSG00000100990.1 ENSMUSG00000100990 ENSMUST00000190284 Gm7891 processed_pseudogene Interval_36508 chr12 47155829 47156239 + 0 NA Intergenic Intergenic -9008 ENSMUSG00000104308.1 ENSMUSG00000104308 ENSMUST00000195244 Gm36971 TEC Interval_137650 chr6 77628713 77629080 + 0 NA intron (ENSMUSG00000063063.12, intron 6 of 7) protein_coding-intron (ENSMUSG00000063063.12, intron 6 of 17) -40415 ENSMUSG00000107707.1 ENSMUSG00000107707 ENSMUST00000204098 Gm44286 TEC Interval_155750 chr8 36746072 36746419 + 0 NA intron (ENSMUSG00000031523.16, intron 5 of 17) protein_coding-intron (ENSMUSG00000031523.16, intron 5 of 17) 206191 ENSMUSG00000031523.16 ENSMUSG00000031523 ENSMUST00000179501 Dlc1 protein_coding Interval_56397 chr14 118462101 118462487 + 0 NA Intergenic Intergenic -86100 ENSMUSG00000115515.1 ENSMUSG00000115515 ENSMUST00000226188 Gm5672 processed_pseudogene Interval_41830 chr13 3051299 3051587 + 0 NA Intergenic Intergenic -30712 ENSMUSG00000113763.1 ENSMUSG00000113763 ENSMUST00000223224 Gm49287 transcribed_unprocessed_pseudogene Interval_5580 chr1 89941832 89942334 + 0 NA Intergenic Intergenic 11822 ENSMUSG00000092627.2 ENSMUSG00000092627 ENSMUST00000189763 D130058E05Rik processed_transcript Interval_122976 chr5 28097169 28097450 + 0 NA Intergenic Intergenic 22643 ENSMUSG00000045294.11 ENSMUSG00000045294 ENSMUST00000199728 Insig1 protein_coding Interval_42555 chr13 15371161 15371510 + 0 NA Intergenic Intergenic -4289 ENSMUSG00000113410.1 ENSMUSG00000113410 ENSMUST00000222267 Gm20043 lincRNA Interval_162629 chr9 6971529 6972045 + 0 NA intron (ENSMUSG00000047193.16, intron 84 of 89) protein_coding-intron (ENSMUSG00000047193.16, intron 83 of 88) 145801 ENSMUSG00000047193.16 ENSMUSG00000047193 ENSMUST00000139115 Dync2h1 protein_coding Interval_22841 chr11 16559012 16559837 + 0 NA Intergenic Intergenic 44891 ENSMUSG00000084347.3 ENSMUSG00000084347 ENSMUST00000120718 Akt2-ps processed_pseudogene Interval_142018 chr6 136563892 136565047 + 0 NA TTS (ENSMUSG00000030213.12) protein_coding-TTS (ENSMUSG00000030213.12) -45438 ENSMUSG00000107702.1 ENSMUSG00000107702 ENSMUST00000204157 Gm44140 bidirectional_promoter_lncRNA Interval_64435 chr16 11342656 11343637 + 0 NA intron (ENSMUSG00000071669.14, intron 1 of 20) protein_coding-intron (ENSMUSG00000071669.14, intron 1 of 7) 20238 ENSMUSG00000071669.14 ENSMUSG00000071669 ENSMUST00000134941 Snx29 protein_coding Interval_34401 chr12 3873744 3874588 + 0 NA TTS (ENSMUSG00000020661.15) protein_coding-TTS (ENSMUSG00000020661.15) -11922 ENSMUSG00000073242.4 ENSMUSG00000073242 ENSMUST00000144896 Dnmt3aos antisense Interval_10378 chr1 170136070 170136894 + 0 NA Intergenic Intergenic -25720 ENSMUSG00000026674.9 ENSMUSG00000026674 ENSMUST00000194619 Ddr2 protein_coding Interval_54026 chr14 64601578 64602369 + 0 NA Intergenic Intergenic 10788 ENSMUSG00000092972.1 ENSMUSG00000092972 ENSMUST00000175231 Mir3078 miRNA Interval_155122 chr8 26808074 26808317 + 0 NA Intergenic Intergenic 27880 ENSMUSG00000110297.1 ENSMUSG00000110297 ENSMUST00000209789 Gm45647 processed_pseudogene Interval_13343 chr10 16050353 16050642 + 0 NA Intergenic Intergenic 258720 ENSMUSG00000112227.1 ENSMUSG00000112227 ENSMUST00000218833 C330004P14Rik lincRNA Interval_22720 chr11 13905540 13907239 + 0 NA Intergenic Intergenic -255690 ENSMUSG00000081631.1 ENSMUSG00000081631 ENSMUST00000121451 Gm12005 processed_pseudogene Interval_124125 chr5 38516345 38516529 + 0 NA Intergenic Intergenic 8974 ENSMUSG00000089646.1 ENSMUSG00000089646 ENSMUST00000162135 Gm15796 processed_pseudogene Interval_51741 chr14 31827259 31827453 + 0 NA intron (ENSMUSG00000014496.8, intron 1 of 27) protein_coding-intron (ENSMUSG00000014496.8, intron 1 of 27) 3022 ENSMUSG00000014496.8 ENSMUSG00000014496 ENSMUST00000227937 Ankrd28 protein_coding Interval_96033 chr2 119314904 119315138 + 0 NA Intergenic Intergenic 11173 ENSMUSG00000074912.10 ENSMUSG00000074912 ENSMUST00000124439 Gm14207 processed_transcript Interval_97999 chr2 146544023 146544269 + 0 NA exon (ENSMUSG00000085796.1, exon 2 of 4) lincRNA-exon (ENSMUSG00000085796.1, exon 2 of 4) 1215 ENSMUSG00000085796.1 ENSMUSG00000085796 ENSMUST00000147212 4933406D12Rik lincRNA Interval_93777 chr2 76805066 76807531 + 0 NA intron (ENSMUSG00000051747.15, intron 189 of 312) protein_coding-intron (ENSMUSG00000051747.15, intron 68 of 190) 30516 ENSMUSG00000051747.15 ENSMUSG00000051747 ENSMUST00000147048 Ttn protein_coding Interval_156027 chr8 42789468 42789744 + 0 NA Intergenic Intergenic 20172 ENSMUSG00000109987.1 ENSMUSG00000109987 ENSMUST00000210858 Gm18414 processed_pseudogene Interval_158717 chr8 85526123 85527364 + 0 NA exon (ENSMUSG00000031700.11, exon 12 of 12) protein_coding-exon (ENSMUSG00000031700.11, exon 12 of 12) 7334 ENSMUSG00000031700.11 ENSMUSG00000031700 ENSMUST00000143846 Gpt2 protein_coding Interval_142899 chr6 146786368 146786663 + 0 NA Intergenic Intergenic 4046 ENSMUSG00000107788.1 ENSMUSG00000107788 ENSMUST00000203844 Gm6266 processed_pseudogene Interval_80739 chr18 46716442 46717588 + 0 NA intron (ENSMUSG00000033022.8, intron 3 of 4) protein_coding-intron (ENSMUSG00000033022.8, intron 3 of 4) 11340 ENSMUSG00000033022.8 ENSMUSG00000033022 ENSMUST00000234222 Cdo1 protein_coding Interval_8612 chr1 143837183 143837738 + 0 NA Intergenic Intergenic 42785 ENSMUSG00000018189.12 ENSMUSG00000018189 ENSMUST00000185539 Uchl5 protein_coding Interval_41788 chr12 119184888 119185277 + 0 NA intron (ENSMUSG00000025321.14, intron 6 of 13) protein_coding-intron (ENSMUSG00000025321.14, intron 6 of 13) 53719 ENSMUSG00000025321.14 ENSMUSG00000025321 ENSMUST00000137804 Itgb8 protein_coding Interval_120466 chr4 148804073 148807227 + 0 NA intron (ENSMUSG00000028977.17, intron 1 of 1) protein_coding-intron (ENSMUSG00000028977.17, intron 1 of 15) 91947 ENSMUSG00000087273.1 ENSMUSG00000087273 ENSMUST00000139895 Gm13203 lincRNA Interval_151840 chr7 127035382 127036880 + 0 NA TTS (ENSMUSG00000108617.1) antisense-TTS (ENSMUSG00000108617.1) -3427 ENSMUSG00000030677.8 ENSMUSG00000030677 ENSMUST00000205806 Kif22 protein_coding Interval_59749 chr15 59021595 59022331 + 0 NA intron (ENSMUSG00000022353.10, intron 3 of 14) protein_coding-intron (ENSMUSG00000022353.10, intron 3 of 14) 37827 ENSMUSG00000115062.1 ENSMUSG00000115062 ENSMUST00000226216 4930544F09Rik antisense Interval_144626 chr7 27211295 27212686 + 0 NA TTS (ENSMUSG00000003752.9) protein_coding-TTS (ENSMUSG00000003752.9) 6454 ENSMUSG00000080533.1 ENSMUSG00000080533 ENSMUST00000116883 Mir1191 miRNA Interval_91663 chr2 46218554 46219149 + 0 NA Intergenic Intergenic -87485 ENSMUSG00000088868.1 ENSMUSG00000088868 ENSMUST00000158243 Gm23072 snoRNA Interval_132904 chr5 148651941 148653052 + 0 NA Intergenic Intergenic -38852 ENSMUSG00000107098.1 ENSMUSG00000107098 ENSMUST00000202418 Gm29815 processed_pseudogene Interval_2559 chr1 40340996 40341375 + 0 NA intron (ENSMUSG00000070942.8, intron 4 of 10) protein_coding-intron (ENSMUSG00000070942.8, intron 4 of 10) -12667 ENSMUSG00000103230.1 ENSMUSG00000103230 ENSMUST00000192199 Gm17970 processed_pseudogene Interval_163431 chr9 21409901 21410103 + 0 NA intron (ENSMUSG00000097665.1, intron 1 of 4) antisense-intron (ENSMUSG00000097665.1, intron 1 of 4) 1718 ENSMUSG00000097665.1 ENSMUSG00000097665 ENSMUST00000181812 Gm16853 antisense Interval_151397 chr7 122084747 122085061 + 0 NA TTS (ENSMUSG00000030869.11) protein_coding-TTS (ENSMUSG00000030869.11) -11179 ENSMUSG00000108573.1 ENSMUSG00000108573 ENSMUST00000206292 Gm44986 TEC Interval_130506 chr5 128465079 128465334 + 0 NA Intergenic Intergenic 16302 ENSMUSG00000104727.1 ENSMUSG00000104727 ENSMUST00000199898 Gm42500 lincRNA Interval_62022 chr15 85946263 85946473 + 0 NA intron (ENSMUSG00000016028.11, intron 4 of 33) protein_coding-intron (ENSMUSG00000016028.11, intron 5 of 34) -44169 ENSMUSG00000016028.11 ENSMUSG00000016028 ENSMUST00000227450 Celsr1 protein_coding Interval_167284 chr9 67033410 67033853 + 0 NA promoter-TSS (ENSMUSG00000032366.15) protein_coding-promoter-TSS (ENSMUSG00000032366.15) -806 ENSMUSG00000032366.15 ENSMUSG00000032366 ENSMUST00000131279 Tpm1 protein_coding Interval_98978 chr2 156443402 156443706 + 0 NA intron (ENSMUSG00000027624.20, intron 2 of 6) protein_coding-intron (ENSMUSG00000027624.20, intron 1 of 21) 4054 ENSMUSG00000086872.1 ENSMUSG00000086872 ENSMUST00000142310 Gm14225 antisense Interval_155714 chr8 36376751 36377168 + 0 NA Intergenic Intergenic -3326 ENSMUSG00000098154.2 ENSMUSG00000098154 ENSMUST00000183049 Gm5787 processed_pseudogene Interval_94047 chr2 82495347 82496289 + 0 NA Intergenic Intergenic -11398 ENSMUSG00000080979.3 ENSMUSG00000080979 ENSMUST00000120616 Gm13675 processed_pseudogene Interval_54443 chr14 69795917 69797214 + 0 NA exon (ENSMUSG00000022075.7, exon 5 of 10) protein_coding-exon (ENSMUSG00000022075.7, exon 5 of 10) 8660 ENSMUSG00000022075.7 ENSMUSG00000022075 ENSMUST00000225088 Rhobtb2 protein_coding Interval_111642 chr4 25050777 25051052 + 0 NA intron (ENSMUSG00000085885.1, intron 2 of 4) processed_transcript-intron (ENSMUSG00000085885.1, intron 2 of 4) -83465 ENSMUSG00000046219.9 ENSMUSG00000046219 ENSMUST00000139588 C230012O17Rik processed_transcript Interval_132367 chr5 144509327 144510008 + 0 NA Intergenic Intergenic -36235 ENSMUSG00000059991.7 ENSMUSG00000059991 ENSMUST00000071782 Nptx2 protein_coding Interval_44189 chr13 41758795 41759188 + 0 NA Intergenic Intergenic -41792 ENSMUSG00000085759.1 ENSMUSG00000085759 ENSMUST00000154159 1700061E18Rik antisense Interval_13273 chr10 13924969 13925259 + 0 NA Intergenic Intergenic 3850 ENSMUSG00000112494.1 ENSMUSG00000112494 ENSMUST00000220438 4930444K16Rik TEC Interval_104781 chr3 73046256 73046452 + 0 NA TTS (ENSMUSG00000048304.8) protein_coding-TTS (ENSMUSG00000048304.8) -2515 ENSMUSG00000102753.1 ENSMUSG00000102753 ENSMUST00000192141 Gm37056 TEC Interval_142483 chr6 142773551 142774500 + 0 NA exon (ENSMUSG00000030282.14, exon 5 of 5) protein_coding-exon (ENSMUSG00000030282.14, exon 5 of 5) 17250 ENSMUSG00000030282.14 ENSMUSG00000030282 ENSMUST00000146643 Cmas protein_coding Interval_7400 chr1 131004932 131005174 + 0 NA Intergenic Intergenic -14792 ENSMUSG00000016529.5 ENSMUSG00000016529 ENSMUST00000016673 Il10 protein_coding Interval_122450 chr5 22863512 22864215 + 0 NA TTS (ENSMUSG00000105543.1) TEC-TTS (ENSMUSG00000105543.1) 4682 ENSMUSG00000105543.1 ENSMUSG00000105543 ENSMUST00000199544 Gm43169 TEC Interval_65663 chr16 24969443 24969661 + 0 NA intron (ENSMUSG00000033306.15, intron 5 of 7) protein_coding-intron (ENSMUSG00000033306.15, intron 10 of 12) 85379 ENSMUSG00000077602.1 ENSMUSG00000077602 ENSMUST00000104414 Gm22672 snoRNA Interval_44322 chr13 43614623 43616423 + 0 NA promoter-TSS (ENSMUSG00000044164.2) protein_coding-promoter-TSS (ENSMUSG00000044164.2) -460 ENSMUSG00000044164.2 ENSMUSG00000044164 ENSMUST00000161817 Rnf182 protein_coding Interval_148736 chr7 84800534 84801142 + 0 NA promoter-TSS (ENSMUSG00000092429.1) unprocessed_pseudogene-promoter-TSS (ENSMUSG00000092429.1) -196 ENSMUSG00000092429.1 ENSMUSG00000092429 ENSMUST00000174258 Gm18958 unprocessed_pseudogene Interval_152267 chr7 131178906 131179108 + 0 NA intron (ENSMUSG00000006204.7, intron 1 of 70) protein_coding-intron (ENSMUSG00000006204.7, intron 1 of 22) 4586 ENSMUSG00000006204.7 ENSMUSG00000006204 ENSMUST00000128522 Cdcp3 protein_coding Interval_113696 chr4 57703114 57704570 + 0 NA intron (ENSMUSG00000089945.13, intron 6 of 10) protein_coding-intron (ENSMUSG00000089945.13, intron 6 of 10) -58765 ENSMUSG00000089286.1 ENSMUSG00000089286 ENSMUST00000158661 Gm24277 snRNA Interval_131770 chr5 139773160 139773451 + 0 NA intron (ENSMUSG00000029547.10, intron 2 of 46) protein_coding-intron (ENSMUSG00000029547.10, intron 2 of 46) 2333 ENSMUSG00000029547.10 ENSMUSG00000029547 ENSMUST00000196864 Ints1 protein_coding Interval_174029 chrX 130547735 130548330 + 0 NA Intergenic Intergenic 13865 ENSMUSG00000083024.1 ENSMUSG00000083024 ENSMUST00000121102 Gm14982 processed_pseudogene Interval_52685 chr14 48581897 48582157 + 0 NA Intergenic Intergenic -8572 ENSMUSG00000115636.1 ENSMUSG00000115636 ENSMUST00000228323 Gm49120 lincRNA Interval_114398 chr4 75164464 75164651 + 0 NA Intergenic Intergenic 16948 ENSMUSG00000081067.1 ENSMUSG00000081067 ENSMUST00000121596 Gm12912 processed_pseudogene Interval_96275 chr2 121153053 121153635 + 0 NA intron (ENSMUSG00000027259.15, intron 3 of 4) protein_coding-intron (ENSMUSG00000027259.15, intron 8 of 9) -12691 ENSMUSG00000074890.4 ENSMUSG00000074890 ENSMUST00000110674 Lcmt2 protein_coding Interval_132168 chr5 143058271 143059037 + 0 NA intron (ENSMUSG00000045078.12, intron 13 of 16) protein_coding-intron (ENSMUSG00000045078.12, intron 13 of 16) -8611 ENSMUSG00000106543.1 ENSMUSG00000106543 ENSMUST00000199336 Gm43378 sense_intronic Interval_72014 chr17 27579007 27579221 + 0 NA TTS (ENSMUSG00000024213.14) protein_coding-TTS (ENSMUSG00000024213.14) -13448 ENSMUSG00000062753.14 ENSMUSG00000062753 ENSMUST00000138728 AI413582 protein_coding Interval_129458 chr5 120324253 120324528 + 0 NA Intergenic Intergenic 21578 ENSMUSG00000107141.1 ENSMUSG00000107141 ENSMUST00000200789 Gm42654 lincRNA Interval_146821 chr7 52288877 52289732 + 0 NA Intergenic Intergenic 69344 ENSMUSG00000109026.1 ENSMUSG00000109026 ENSMUST00000209088 Gm44683 processed_pseudogene Interval_122589 chr5 24051731 24052445 + 0 NA Intergenic Intergenic -33156 ENSMUSG00000106118.1 ENSMUSG00000106118 ENSMUST00000197900 Gm18038 processed_pseudogene Interval_152282 chr7 131362291 131363505 + 0 NA promoter-TSS (ENSMUSG00000040177.10) protein_coding-promoter-TSS (ENSMUSG00000040177.10) -202 ENSMUSG00000040177.10 ENSMUSG00000040177 ENSMUST00000208509 2310057M21Rik protein_coding Interval_123279 chr5 31086509 31086827 + 0 NA TTS (ENSMUSG00000029151.14) protein_coding-TTS (ENSMUSG00000029151.14) -8316 ENSMUSG00000104299.1 ENSMUSG00000104299 ENSMUST00000191780 Gm9924 TEC Interval_73761 chr17 43360375 43360697 + 0 NA promoter-TSS (ENSMUSG00000056492.6) protein_coding-promoter-TSS (ENSMUSG00000056492.6) 85 ENSMUSG00000056492.6 ENSMUSG00000056492 ENSMUST00000225004 Adgrf5 protein_coding Interval_115258 chr4 94948538 94948731 + 0 NA intron (ENSMUSG00000062627.9, intron 4 of 6) protein_coding-intron (ENSMUSG00000062627.9, intron 17 of 19) 13013 ENSMUSG00000083179.3 ENSMUSG00000083179 ENSMUST00000121965 Gm12693 processed_pseudogene Interval_85639 chr19 29264667 29265091 + 0 NA intron (ENSMUSG00000024789.13, intron 2 of 23) protein_coding-intron (ENSMUSG00000024789.13, intron 2 of 23) 12438 ENSMUSG00000024789.13 ENSMUSG00000024789 ENSMUST00000238009 Jak2 protein_coding Interval_173225 chrX 74413451 74413865 + 0 NA TTS (ENSMUSG00000031400.10) protein_coding-TTS (ENSMUSG00000031400.10) 15222 ENSMUSG00000031400.10 ENSMUSG00000031400 ENSMUST00000155963 G6pdx protein_coding Interval_89451 chr2 20747375 20747813 + 0 NA intron (ENSMUSG00000036617.17, intron 2 of 7) protein_coding-intron (ENSMUSG00000036617.17, intron 7 of 18) -34360 ENSMUSG00000086418.1 ENSMUSG00000086418 ENSMUST00000137186 Gm13362 antisense Interval_22578 chr11 11904360 11906214 + 0 NA Intergenic Intergenic -7143 ENSMUSG00000020182.16 ENSMUSG00000020182 ENSMUST00000134121 Ddc protein_coding Interval_71381 chr17 22860105 22860978 + 0 NA intron (ENSMUSG00000059142.16, intron 4 of 5) protein_coding-intron (ENSMUSG00000059142.16, intron 3 of 4) 6593 ENSMUSG00000059142.16 ENSMUSG00000059142 ENSMUST00000127557 Zfp945 protein_coding Interval_26244 chr11 55404591 55405517 + 0 NA intron (ENSMUSG00000018593.13, intron 7 of 11) protein_coding-intron (ENSMUSG00000018593.13, intron 5 of 9) 15271 ENSMUSG00000018593.13 ENSMUSG00000018593 ENSMUST00000125787 Sparc protein_coding Interval_98640 chr2 153740770 153742095 + 0 NA promoter-TSS (ENSMUSG00000027479.14) protein_coding-promoter-TSS (ENSMUSG00000027479.14) -170 ENSMUSG00000027479.14 ENSMUSG00000027479 ENSMUST00000123570 Mapre1 protein_coding Interval_75394 chr17 66334994 66335883 + 0 NA Intergenic Intergenic -15926 ENSMUSG00000117010.1 ENSMUSG00000117010 ENSMUST00000233050 Gm49933 processed_pseudogene Interval_122696 chr5 24711789 24713049 + 0 NA TTS (ENSMUSG00000055235.11) protein_coding-TTS (ENSMUSG00000055235.11) 958 ENSMUSG00000055235.11 ENSMUSG00000055235 ENSMUST00000127320 Wdr86 protein_coding Interval_28270 chr11 74804110 74804493 + 0 NA intron (ENSMUSG00000010554.14, intron 1 of 2) protein_coding-intron (ENSMUSG00000010554.14, intron 8 of 10) 977 ENSMUSG00000010554.14 ENSMUSG00000010554 ENSMUST00000134571 Mettl16 protein_coding Interval_117759 chr4 126072127 126072385 + 0 NA intron (ENSMUSG00000042616.8, intron 2 of 10) protein_coding-intron (ENSMUSG00000042616.8, intron 1 of 9) -1997 ENSMUSG00000079942.5 ENSMUSG00000079942 ENSMUST00000116058 Rpl28-ps3 processed_pseudogene Interval_106715 chr3 99389126 99389487 + 0 NA Intergenic Intergenic 74519 ENSMUSG00000081183.1 ENSMUSG00000081183 ENSMUST00000117572 Gm12449 processed_pseudogene Interval_163435 chr9 21424295 21425587 + 0 NA promoter-TSS (ENSMUSG00000033335.17) protein_coding-promoter-TSS (ENSMUSG00000033335.17) -27 ENSMUSG00000033335.17 ENSMUSG00000033335 ENSMUST00000174243 Dnm2 protein_coding Interval_11157 chr1 179734401 179735682 + 0 NA intron (ENSMUSG00000087236.3, intron 3 of 22) protein_coding-intron (ENSMUSG00000087236.3, intron 3 of 22) -34761 ENSMUSG00000087236.3 ENSMUSG00000087236 ENSMUST00000223392 Kif28 protein_coding Interval_24155 chr11 30778327 30778614 + 0 NA intron (ENSMUSG00000040850.17, intron 1 of 4) protein_coding-intron (ENSMUSG00000040850.17, intron 1 of 46) -23509 ENSMUSG00000083990.1 ENSMUSG00000083990 ENSMUST00000121590 Gm12101 processed_pseudogene Interval_54609 chr14 71247870 71248069 + 0 NA Intergenic Intergenic -3304 ENSMUSG00000115139.1 ENSMUSG00000115139 ENSMUST00000226131 Gm4251 lincRNA Interval_130520 chr5 128541456 128542444 + 0 NA Intergenic Intergenic 21729 ENSMUSG00000105172.1 ENSMUSG00000105172 ENSMUST00000196193 Gm42499 TEC Interval_39961 chr12 100124114 100126019 + 0 NA TTS (ENSMUSG00000021179.8) protein_coding-TTS (ENSMUSG00000021179.8) 4706 ENSMUSG00000021179.8 ENSMUSG00000021179 ENSMUST00000221954 Nrde2 protein_coding Interval_159222 chr8 91882634 91883614 + 0 NA Intergenic Intergenic 17253 ENSMUSG00000099664.1 ENSMUSG00000099664 ENSMUST00000191594 Gm28511 lincRNA Interval_145375 chr7 34301702 34302017 + 0 NA intron (ENSMUSG00000066571.13, intron 1 of 1) protein_coding-intron (ENSMUSG00000066571.13, intron 1 of 13) 11663 ENSMUSG00000066571.13 ENSMUSG00000066571 ENSMUST00000205618 4931406P16Rik protein_coding Interval_34730 chr12 9009015 9009238 + 0 NA intron (ENSMUSG00000066643.12, intron 17 of 22) protein_coding-intron (ENSMUSG00000066643.12, intron 17 of 27) -20901 ENSMUSG00000066637.2 ENSMUSG00000066637 ENSMUST00000219470 Ttc32 protein_coding Interval_16219 chr10 61508413 61508583 + 0 NA intron (ENSMUSG00000037151.8, intron 2 of 4) protein_coding-intron (ENSMUSG00000037151.8, intron 2 of 4) 2087 ENSMUSG00000112710.1 ENSMUSG00000112710 ENSMUST00000219782 Gm17829 processed_pseudogene Interval_17225 chr10 75111377 75112709 + 0 NA intron (ENSMUSG00000009681.10, intron 1 of 22) protein_coding-intron (ENSMUSG00000009681.10, intron 1 of 22) -64333 ENSMUSG00000009681.10 ENSMUSG00000009681 ENSMUST00000219807 Bcr protein_coding Interval_94325 chr2 88916015 88916421 + 0 NA Intergenic Intergenic -1127 ENSMUSG00000075113.2 ENSMUSG00000075113 ENSMUST00000099809 Olfr1209 protein_coding Interval_48895 chr13 104517774 104519641 + 0 NA Intergenic Intergenic -166224 ENSMUSG00000084860.1 ENSMUSG00000084860 ENSMUST00000131215 2610204G07Rik antisense Interval_72931 chr17 33598212 33602472 + 0 NA intron (ENSMUSG00000024300.17, intron 21 of 27) protein_coding-intron (ENSMUSG00000024300.17, intron 21 of 27) 2201 ENSMUSG00000024300.17 ENSMUSG00000024300 ENSMUST00000235099 Myo1f protein_coding Interval_133690 chr6 8737805 8739001 + 0 NA intron (ENSMUSG00000062995.12, intron 4 of 10) protein_coding-intron (ENSMUSG00000062995.12, intron 5 of 13) 19996 ENSMUSG00000062995.12 ENSMUSG00000062995 ENSMUST00000151758 Ica1 protein_coding Interval_149931 chr7 102776677 102777018 + 0 NA TTS (ENSMUSG00000073966.3) protein_coding-TTS (ENSMUSG00000073966.3) -4631 ENSMUSG00000110122.1 ENSMUSG00000110122 ENSMUST00000210779 Olfr562-ps1 polymorphic_pseudogene Interval_119594 chr4 138591024 138591251 + 0 NA intron (ENSMUSG00000028753.12, intron 11 of 14) protein_coding-intron (ENSMUSG00000028753.12, intron 11 of 21) -3408 ENSMUSG00000088589.1 ENSMUSG00000088589 ENSMUST00000157964 Gm22961 snRNA Interval_68211 chr16 68395327 68395613 + 0 NA Intergenic Intergenic 57495 ENSMUSG00000089385.1 ENSMUSG00000089385 ENSMUST00000158760 Gm24681 snoRNA Interval_73419 chr17 37094558 37094860 + 0 NA promoter-TSS (ENSMUSG00000095377.2) protein_coding-promoter-TSS (ENSMUSG00000095377.2) 3569 ENSMUSG00000095377.2 ENSMUSG00000095377 ENSMUST00000087144 Olfr91 protein_coding Interval_65218 chr16 20610470 20612055 + 0 NA promoter-TSS (ENSMUSG00000033809.15) protein_coding-promoter-TSS (ENSMUSG00000033809.15) -339 ENSMUSG00000115219.2 ENSMUSG00000115219 ENSMUST00000119224 Eef1akmt4 protein_coding Interval_107956 chr3 117437297 117439008 + 0 NA Intergenic Intergenic -46932 ENSMUSG00000033342.15 ENSMUSG00000033342 ENSMUST00000106473 Plppr5 protein_coding Interval_102589 chr3 28034764 28035326 + 0 NA intron (ENSMUSG00000027695.16, intron 1 of 21) protein_coding-intron (ENSMUSG00000027695.16, intron 6 of 25) -44145 ENSMUSG00000027695.16 ENSMUSG00000027695 ENSMUST00000126594 Pld1 protein_coding Interval_62958 chr15 98173858 98174226 + 0 NA Intergenic Intergenic 6884 ENSMUSG00000029875.5 ENSMUSG00000029875 ENSMUST00000031914 Ccdc184 protein_coding Interval_158935 chr8 88093085 88093417 + 0 NA Intergenic Intergenic -16535 ENSMUSG00000118626.1 ENSMUSG00000118626 ENSMUST00000239289 AC127285.1 processed_pseudogene Interval_29665 chr11 85894763 85895478 + 0 NA intron (ENSMUSG00000000094.12, intron 3 of 8) protein_coding-intron (ENSMUSG00000000094.12, intron 2 of 7) 8698 ENSMUSG00000000094.12 ENSMUSG00000000094 ENSMUST00000108045 Tbx4 protein_coding Interval_58257 chr15 31441820 31442709 + 0 NA intron (ENSMUSG00000022236.10, intron 4 of 4) protein_coding-intron (ENSMUSG00000022236.10, intron 4 of 4) 4553 ENSMUSG00000068964.5 ENSMUSG00000068964 ENSMUST00000091031 Gm6361 processed_pseudogene Interval_67108 chr16 43219845 43220474 + 0 NA intron (ENSMUSG00000022708.16, intron 4 of 9) protein_coding-intron (ENSMUSG00000022708.16, intron 4 of 9) 35586 ENSMUSG00000083827.1 ENSMUSG00000083827 ENSMUST00000120369 Gm15712 processed_pseudogene Interval_98282 chr2 150786375 150787772 + 0 NA exon (ENSMUSG00000033059.7, exon 1 of 20) protein_coding-exon (ENSMUSG00000033059.7, exon 1 of 20) -28249 ENSMUSG00000033059.7 ENSMUSG00000033059 ENSMUST00000135717 Pygb protein_coding Interval_153251 chr7 142918960 142919967 + 0 NA intron (ENSMUSG00000000214.11, intron 1 of 3) protein_coding-intron (ENSMUSG00000000214.11, intron 1 of 11) 11657 ENSMUSG00000000214.11 ENSMUSG00000000214 ENSMUST00000140344 Th protein_coding Interval_95570 chr2 112378846 112379819 + 0 NA exon (ENSMUSG00000027132.3, exon 1 of 10) protein_coding-exon (ENSMUSG00000027132.3, exon 1 of 10) 106 ENSMUSG00000027132.3 ENSMUSG00000027132 ENSMUST00000151257 Katnbl1 protein_coding Interval_30605 chr11 95402251 95404391 + 0 NA Intergenic Intergenic 18564 ENSMUSG00000020873.15 ENSMUSG00000020873 ENSMUST00000143090 Slc35b1 protein_coding Interval_118128 chr4 129108136 129108343 + 0 NA exon (ENSMUSG00000028786.15, exon 2 of 5) protein_coding-exon (ENSMUSG00000028786.15, exon 2 of 5) 1370 ENSMUSG00000028786.15 ENSMUSG00000028786 ENSMUST00000148979 Tmem54 protein_coding Interval_119388 chr4 137396885 137397530 + 0 NA Intergenic Intergenic 1908 ENSMUSG00000070667.7 ENSMUSG00000070667 ENSMUST00000116034 Rpl31-ps10 processed_pseudogene Interval_1200 chr1 16953669 16954141 + 0 NA intron (ENSMUSG00000101640.1, intron 1 of 2) antisense-intron (ENSMUSG00000101640.1, intron 1 of 2) 22935 ENSMUSG00000104133.1 ENSMUSG00000104133 ENSMUST00000194790 4921511E07Rik TEC Interval_27172 chr11 63696570 63697067 + 0 NA Intergenic Intergenic -95895 ENSMUSG00000082256.1 ENSMUSG00000082256 ENSMUST00000119770 Gm12287 processed_pseudogene Interval_14381 chr10 32045715 32045974 + 0 NA intron (ENSMUSG00000069670.8, intron 3 of 3) protein_coding-intron (ENSMUSG00000069670.8, intron 3 of 6) -72175 ENSMUSG00000112906.1 ENSMUSG00000112906 ENSMUST00000218153 Gm18189 processed_pseudogene Interval_137540 chr6 72988955 72989299 + 0 NA Intergenic Intergenic -6065 ENSMUSG00000107661.1 ENSMUSG00000107661 ENSMUST00000203834 Gm18402 processed_pseudogene Interval_24501 chr11 33782902 33783264 + 0 NA intron (ENSMUSG00000053519.17, intron 1 of 8) protein_coding-intron (ENSMUSG00000053519.17, intron 1 of 7) 77533 ENSMUSG00000087328.1 ENSMUSG00000087328 ENSMUST00000125068 Gm12120 antisense Interval_668 chr1 9740471 9740855 + 0 NA intron (ENSMUSG00000045210.8, intron 1 of 2) protein_coding-intron (ENSMUSG00000045210.8, intron 1 of 2) 7719 ENSMUSG00000045210.8 ENSMUSG00000045210 ENSMUST00000057438 Vcpip1 protein_coding Interval_148156 chr7 79525689 79525898 + 0 NA intron (ENSMUSG00000097023.8, intron 3 of 4) lincRNA-intron (ENSMUSG00000097023.8, intron 1 of 1) 8911 ENSMUSG00000103831.1 ENSMUSG00000103831 ENSMUST00000195696 Gm37608 TEC Interval_756 chr1 10706877 10707177 + 0 NA intron (ENSMUSG00000042501.12, intron 1 of 9) protein_coding-intron (ENSMUSG00000042501.12, intron 1 of 10) 11904 ENSMUSG00000081417.1 ENSMUSG00000081417 ENSMUST00000119252 Gm15603 processed_pseudogene Interval_45794 chr13 58127443 58129734 + 0 NA promoter-TSS (ENSMUSG00000007836.6) protein_coding-promoter-TSS (ENSMUSG00000007836.6) -32 ENSMUSG00000007836.6 ENSMUSG00000007836 ENSMUST00000007980 Hnrnpa0 protein_coding Interval_52262 chr14 41127506 41128360 + 0 NA Intergenic Intergenic -3855 ENSMUSG00000021789.14 ENSMUSG00000021789 ENSMUST00000170719 Sftpa1 protein_coding Interval_166849 chr9 63187202 63187401 + 0 NA intron (ENSMUSG00000058444.8, intron 21 of 21) protein_coding-intron (ENSMUSG00000058444.8, intron 21 of 21) -40290 ENSMUSG00000022245.15 ENSMUSG00000022245 ENSMUST00000055281 Skor1 protein_coding Interval_76794 chr17 84096130 84097903 + 0 NA Intergenic Intergenic 18356 ENSMUSG00000117571.1 ENSMUSG00000117571 ENSMUST00000234076 4933433H22Rik lincRNA Interval_79057 chr18 24202818 24203247 + 0 NA Intergenic Intergenic -29565 ENSMUSG00000000420.15 ENSMUSG00000000420 ENSMUST00000170191 Galnt1 protein_coding Interval_9994 chr1 164744589 164745401 + 0 NA Intergenic Intergenic -32454 ENSMUSG00000102163.1 ENSMUSG00000102163 ENSMUST00000193985 Gm36945 lincRNA Interval_101723 chr3 9158957 9159761 + 0 NA Intergenic Intergenic 86592 ENSMUSG00000103011.1 ENSMUSG00000103011 ENSMUST00000193160 Gm8860 processed_pseudogene Interval_129905 chr5 123013738 123016304 + 0 NA promoter-TSS (ENSMUSG00000049686.14) protein_coding-promoter-TSS (ENSMUSG00000049686.14) -317 ENSMUSG00000049686.14 ENSMUSG00000049686 ENSMUST00000152213 Orai1 protein_coding Interval_64820 chr16 16158073 16158482 + 0 NA Intergenic Intergenic -11473 ENSMUSG00000041974.10 ENSMUSG00000041974 ENSMUST00000229846 Spidr protein_coding Interval_74649 chr17 54343649 54343905 + 0 NA Intergenic Intergenic 3816 ENSMUSG00000117006.1 ENSMUSG00000117006 ENSMUST00000233783 Gm9224 processed_pseudogene Interval_35135 chr12 17509955 17511497 + 0 NA Intergenic Intergenic -34246 ENSMUSG00000011179.8 ENSMUSG00000011179 ENSMUST00000222250 Odc1 protein_coding Interval_45246 chr13 53472323 53473017 + 0 NA exon (ENSMUSG00000021469.9, exon 1 of 2) protein_coding-exon (ENSMUSG00000021469.9, exon 1 of 2) 404 ENSMUSG00000021469.9 ENSMUSG00000021469 ENSMUST00000188606 Msx2 protein_coding Interval_64510 chr16 12911811 12912002 + 0 NA intron (ENSMUSG00000116520.1, intron 1 of 11) lincRNA-intron (ENSMUSG00000116520.1, intron 1 of 11) 34029 ENSMUSG00000116520.1 ENSMUSG00000116520 ENSMUST00000230696 4930414F18Rik lincRNA Interval_49110 chr13 108127315 108128497 + 0 NA intron (ENSMUSG00000068184.7, intron 1 of 3) protein_coding-intron (ENSMUSG00000068184.7, intron 1 of 3) 30578 ENSMUSG00000068184.7 ENSMUSG00000068184 ENSMUST00000225830 Ndufaf2 protein_coding Interval_2379 chr1 38823322 38824571 + 0 NA intron (ENSMUSG00000048814.11, intron 1 of 11) protein_coding-intron (ENSMUSG00000048814.11, intron 1 of 11) 12428 ENSMUSG00000048814.11 ENSMUSG00000048814 ENSMUST00000191724 Lonrf2 protein_coding Interval_62208 chr15 88827709 88828966 + 0 NA Intergenic Intergenic -6963 ENSMUSG00000093831.1 ENSMUSG00000093831 ENSMUST00000180226 Gm23144 snRNA Interval_110925 chr4 10315924 10316129 + 0 NA Intergenic Intergenic 123717 ENSMUSG00000084215.3 ENSMUSG00000084215 ENSMUST00000119515 Gm11814 processed_pseudogene Interval_16532 chr10 63404899 63405131 + 0 NA intron (ENSMUSG00000036764.12, intron 2 of 3) protein_coding-intron (ENSMUSG00000036764.12, intron 3 of 4) -7984 ENSMUSG00000112572.1 ENSMUSG00000112572 ENSMUST00000218466 Gm7530 processed_pseudogene Interval_34502 chr12 4700582 4702277 + 0 NA TTS (ENSMUSG00000020640.10) protein_coding-TTS (ENSMUSG00000020640.10) -11503 ENSMUSG00000091732.1 ENSMUSG00000091732 ENSMUST00000080062 Gm17541 processed_pseudogene Interval_108228 chr3 122628730 122630399 + 0 NA promoter-TSS (ENSMUSG00000106365.1) lincRNA-promoter-TSS (ENSMUSG00000106365.1) 604 ENSMUSG00000106365.1 ENSMUSG00000106365 ENSMUST00000198427 Gm43568 lincRNA Interval_127607 chr5 105750474 105751658 + 0 NA intron (ENSMUSG00000046079.16, intron 1 of 2) protein_coding-intron (ENSMUSG00000046079.16, intron 2 of 2) 19677 ENSMUSG00000046079.16 ENSMUSG00000046079 ENSMUST00000134605 Lrrc8d protein_coding Interval_6590 chr1 117815904 117816892 + 0 NA Intergenic Intergenic -13683 ENSMUSG00000100305.1 ENSMUSG00000100305 ENSMUST00000187455 Gm28360 protein_coding Interval_154944 chr8 25213317 25213651 + 0 NA intron (ENSMUSG00000065954.11, intron 1 of 4) protein_coding-intron (ENSMUSG00000065954.11, intron 1 of 2) -12035 ENSMUSG00000065954.11 ENSMUSG00000065954 ENSMUST00000211218 Tacc1 protein_coding Interval_72269 chr17 28894905 28896636 + 0 NA TTS (ENSMUSG00000048905.5) protein_coding-TTS (ENSMUSG00000048905.5) -9495 ENSMUSG00000085333.1 ENSMUSG00000085333 ENSMUST00000125317 1700030A11Rik antisense Interval_144225 chr7 23319155 23319641 + 0 NA intron (ENSMUSG00000045693.8, intron 1 of 8) protein_coding-intron (ENSMUSG00000045693.8, intron 1 of 8) -35602 ENSMUSG00000045693.8 ENSMUSG00000045693 ENSMUST00000133392 Nlrp4e protein_coding Interval_141820 chr6 134709667 134711682 + 0 NA TTS (ENSMUSG00000042992.15) protein_coding-TTS (ENSMUSG00000042992.15) 9124 ENSMUSG00000042992.15 ENSMUSG00000042992 ENSMUST00000204133 Borcs5 protein_coding Interval_32083 chr11 105170960 105171607 + 0 NA Intergenic Intergenic -4663 ENSMUSG00000081965.1 ENSMUSG00000081965 ENSMUST00000118770 Gm11620 processed_pseudogene Interval_169358 chr9 96687153 96687417 + 0 NA TTS (ENSMUSG00000040433.16) protein_coding-TTS (ENSMUSG00000040433.16) -18543 ENSMUSG00000102097.1 ENSMUSG00000102097 ENSMUST00000186821 A930006L05Rik antisense Interval_160621 chr8 111108339 111108546 + 0 NA intron (ENSMUSG00000033624.10, intron 3 of 18) protein_coding-intron (ENSMUSG00000033624.10, intron 3 of 17) 13787 ENSMUSG00000033624.10 ENSMUSG00000033624 ENSMUST00000144377 Pdpr protein_coding Interval_93174 chr2 70830314 70831588 + 0 NA Intergenic Intergenic -25738 ENSMUSG00000082303.1 ENSMUSG00000082303 ENSMUST00000120668 Gm13633 processed_pseudogene Interval_133701 chr6 8948178 8950299 + 0 NA promoter-TSS (ENSMUSG00000046178.3) protein_coding-promoter-TSS (ENSMUSG00000046178.3) 807 ENSMUSG00000046178.3 ENSMUSG00000046178 ENSMUST00000060369 Nxph1 protein_coding Interval_117678 chr4 125511489 125511941 + 0 NA intron (ENSMUSG00000001985.9, intron 1 of 15) protein_coding-intron (ENSMUSG00000001985.9, intron 1 of 15) 6966 ENSMUSG00000094403.1 ENSMUSG00000094403 ENSMUST00000102081 Mir692-2 miRNA Interval_31940 chr11 103973319 103973564 + 0 NA intron (ENSMUSG00000062421.13, intron 1 of 1) protein_coding-intron (ENSMUSG00000062421.13, intron 3 of 4) -6148 ENSMUSG00000062421.13 ENSMUSG00000062421 ENSMUST00000154089 Arf2 protein_coding Interval_96244 chr2 120907127 120907476 + 0 NA intron (ENSMUSG00000027272.5, intron 28 of 46) protein_coding-intron (ENSMUSG00000027272.5, intron 28 of 46) 23041 ENSMUSG00000027272.5 ENSMUSG00000027272 ENSMUST00000138824 Ubr1 protein_coding Interval_7438 chr1 131329019 131329518 + 0 NA intron (ENSMUSG00000026425.15, intron 2 of 10) protein_coding-intron (ENSMUSG00000026425.15, intron 13 of 22) 3802 ENSMUSG00000026425.15 ENSMUSG00000026425 ENSMUST00000187273 Srgap2 protein_coding Interval_103542 chr3 48320898 48321493 + 0 NA Intergenic Intergenic 242854 ENSMUSG00000104110.1 ENSMUSG00000104110 ENSMUST00000192186 Gm37295 TEC Interval_94879 chr2 99571649 99572044 + 0 NA Intergenic Intergenic 16595 ENSMUSG00000084313.1 ENSMUSG00000084313 ENSMUST00000117921 Gm13809 processed_pseudogene Interval_58336 chr15 32578989 32579626 + 0 NA intron (ENSMUSG00000022231.10, intron 11 of 12) protein_coding-intron (ENSMUSG00000022231.10, intron 11 of 22) 44198 ENSMUSG00000115063.1 ENSMUSG00000115063 ENSMUST00000227807 4930465K09Rik antisense Interval_23570 chr11 23447431 23448034 + 0 NA intron (ENSMUSG00000056342.16, intron 57 of 79) protein_coding-intron (ENSMUSG00000056342.16, intron 19 of 23) 31935 ENSMUSG00000065591.1 ENSMUSG00000065591 ENSMUST00000083657 Gm22753 snRNA Interval_150032 chr7 105220991 105221665 + 0 NA Intergenic Intergenic -16173 ENSMUSG00000048425.3 ENSMUSG00000048425 ENSMUST00000050157 Olfr686 protein_coding Interval_108185 chr3 122279110 122279812 + 0 NA exon (ENSMUSG00000039756.12, exon 2 of 2) protein_coding-exon (ENSMUSG00000039756.12, exon 2 of 2) 2688 ENSMUSG00000039756.12 ENSMUSG00000039756 ENSMUST00000196338 Dnttip2 protein_coding Interval_120890 chr4 151339519 151340309 + 0 NA intron (ENSMUSG00000014592.21, intron 5 of 24) protein_coding-intron (ENSMUSG00000014592.21, intron 5 of 23) -36556 ENSMUSG00000085593.1 ENSMUSG00000085593 ENSMUST00000129097 4930589P08Rik antisense Interval_106481 chr3 96621992 96623772 + 0 NA TTS (ENSMUSG00000049288.4) protein_coding-TTS (ENSMUSG00000049288.4) 4581 ENSMUSG00000049288.4 ENSMUSG00000049288 ENSMUST00000199166 Lix1l protein_coding Interval_31897 chr11 103683034 103683832 + 0 NA intron (ENSMUSG00000020946.13, intron 4 of 4) protein_coding-intron (ENSMUSG00000020946.13, intron 5 of 5) 14265 ENSMUSG00000020946.13 ENSMUSG00000020946 ENSMUST00000145265 Gosr2 protein_coding Interval_124139 chr5 38628128 38628409 + 0 NA Intergenic Intergenic 53237 ENSMUSG00000086422.1 ENSMUSG00000086422 ENSMUST00000147322 4930421P07Rik processed_pseudogene Interval_12811 chr10 5783732 5784006 + 0 NA Intergenic Intergenic 20731 ENSMUSG00000019773.7 ENSMUSG00000019773 ENSMUST00000142200 Fbxo5 protein_coding Interval_20691 chr10 120257296 120257605 + 0 NA Intergenic Intergenic -23790 ENSMUSG00000112322.1 ENSMUSG00000112322 ENSMUST00000219103 Gm48115 TEC Interval_100825 chr2 172735594 172735866 + 0 NA Intergenic Intergenic 128611 ENSMUSG00000093160.1 ENSMUSG00000093160 ENSMUST00000175419 Gm22773 miRNA Interval_23207 chr11 20561026 20562004 + 0 NA intron (ENSMUSG00000049800.13, intron 1 of 1) protein_coding-intron (ENSMUSG00000049800.13, intron 1 of 1) 13674 ENSMUSG00000083555.1 ENSMUSG00000083555 ENSMUST00000121890 Gm12035 processed_pseudogene Interval_124697 chr5 53377339 53378278 + 0 NA Intergenic Intergenic -6034 ENSMUSG00000106808.1 ENSMUSG00000106808 ENSMUST00000200904 Gm42745 lincRNA Interval_44490 chr13 45349385 45350311 + 0 NA Intergenic Intergenic -41079 ENSMUSG00000038175.10 ENSMUSG00000038175 ENSMUST00000222178 Mylip protein_coding Interval_35281 chr12 19650601 19651415 + 0 NA Intergenic Intergenic -7038 ENSMUSG00000113714.1 ENSMUSG00000113714 ENSMUST00000221889 Gm48635 processed_pseudogene Interval_15286 chr10 44096840 44097255 + 0 NA intron (ENSMUSG00000019866.15, intron 1 of 21) protein_coding-intron (ENSMUSG00000019866.15, intron 1 of 21) -38269 ENSMUSG00000019866.15 ENSMUSG00000019866 ENSMUST00000239010 Crybg1 protein_coding Interval_136295 chr6 52674230 52675528 + 0 NA Intergenic Intergenic -34564 ENSMUSG00000029776.11 ENSMUSG00000029776 ENSMUST00000205086 Hibadh protein_coding Interval_146060 chr7 43606875 43608941 + 0 NA intron (ENSMUSG00000055102.15, intron 1 of 3) protein_coding-intron (ENSMUSG00000055102.15, intron 1 of 4) 699 ENSMUSG00000055102.15 ENSMUSG00000055102 ENSMUST00000116324 Zfp819 protein_coding Interval_72953 chr17 33788226 33788851 + 0 NA Intergenic Intergenic -2814 ENSMUSG00000092602.1 ENSMUSG00000092602 ENSMUST00000173637 4931413I07Rik lincRNA Interval_97231 chr2 132444628 132445024 + 0 NA intron (ENSMUSG00000027345.6, intron 1 of 3) lincRNA-intron (ENSMUSG00000027345.6, intron 1 of 3) 20085 ENSMUSG00000027345.6 ENSMUSG00000027345 ENSMUST00000124095 4921508D12Rik lincRNA Interval_53480 chr14 57761405 57762505 + 0 NA Intergenic Intergenic -15834 ENSMUSG00000021959.16 ENSMUSG00000021959 ENSMUST00000173077 Lats2 protein_coding Interval_113027 chr4 47030613 47030895 + 0 NA exon (ENSMUSG00000066191.12, exon 10 of 15) protein_coding-exon (ENSMUSG00000066191.12, exon 10 of 15) -10844 ENSMUSG00000081561.1 ENSMUSG00000081561 ENSMUST00000119580 Gm12425 processed_pseudogene Interval_152529 chr7 133909989 133911838 + 0 NA intron (ENSMUSG00000054555.11, intron 8 of 12) protein_coding-intron (ENSMUSG00000054555.11, intron 18 of 22) 28828 ENSMUSG00000093032.1 ENSMUSG00000093032 ENSMUST00000175291 Gm23631 miRNA Interval_51058 chr14 21853434 21854082 + 0 NA intron (ENSMUSG00000090564.9, intron 2 of 2) antisense-intron (ENSMUSG00000090564.9, intron 2 of 2) -5071 ENSMUSG00000021773.11 ENSMUSG00000021773 ENSMUST00000177527 Comtd1 protein_coding Interval_20401 chr10 117360389 117360911 + 0 NA intron (ENSMUSG00000055531.12, intron 6 of 8) protein_coding-intron (ENSMUSG00000055531.12, intron 6 of 9) 16278 ENSMUSG00000055531.12 ENSMUSG00000055531 ENSMUST00000175924 Cpsf6 protein_coding Interval_61307 chr15 80736691 80737426 + 0 NA intron (ENSMUSG00000047888.10, intron 1 of 24) protein_coding-intron (ENSMUSG00000047888.10, intron 1 of 24) 24787 ENSMUSG00000116480.1 ENSMUSG00000116480 ENSMUST00000230620 Gm49512 sense_intronic Interval_20052 chr10 112798221 112799092 + 0 NA Intergenic Intergenic -39096 ENSMUSG00000112722.1 ENSMUSG00000112722 ENSMUST00000218495 Gm3942 lincRNA Interval_18475 chr10 86463765 86464145 + 0 NA intron (ENSMUSG00000059602.14, intron 2 of 8) protein_coding-intron (ENSMUSG00000059602.14, intron 2 of 13) 27942 ENSMUSG00000059602.14 ENSMUSG00000059602 ENSMUST00000139197 Syn3 protein_coding Interval_90807 chr2 32701960 32704422 + 0 NA intron (ENSMUSG00000009566.12, intron 2 of 9) protein_coding-intron (ENSMUSG00000009566.12, intron 2 of 8) 9062 ENSMUSG00000009555.16 ENSMUSG00000009555 ENSMUST00000155205 Cdk9 protein_coding Interval_143164 chr7 4086168 4086613 + 0 NA intron (ENSMUSG00000086155.7, intron 5 of 6) antisense-intron (ENSMUSG00000086155.7, intron 5 of 6) -15500 ENSMUSG00000075719.1 ENSMUSG00000075719 ENSMUST00000097237 Gm23741 snRNA Interval_117352 chr4 123182155 123183881 + 0 NA promoter-TSS (ENSMUSG00000046093.9) protein_coding-promoter-TSS (ENSMUSG00000046093.9) -711 ENSMUSG00000046093.9 ENSMUSG00000046093 ENSMUST00000152194 Hpcal4 protein_coding Interval_127201 chr5 101190450 101191816 + 0 NA Intergenic Intergenic -114445 ENSMUSG00000105965.1 ENSMUSG00000105965 ENSMUST00000197114 Cycs-ps2 processed_pseudogene Interval_25652 chr11 50415979 50416214 + 0 NA intron (ENSMUSG00000020375.9, intron 6 of 8) protein_coding-intron (ENSMUSG00000020375.9, intron 6 of 17) -1521 ENSMUSG00000020375.9 ENSMUSG00000020375 ENSMUST00000129304 Rufy1 protein_coding Interval_23918 chr11 28298485 28298968 + 0 NA Intergenic Intergenic 41088 ENSMUSG00000032889.7 ENSMUSG00000032889 ENSMUST00000042595 Gm6685 processed_pseudogene Interval_173342 chrX 82288161 82288557 + 0 NA Intergenic Intergenic 100677 ENSMUSG00000064781.2 ENSMUSG00000064781 ENSMUST00000082847 Gm22686 snRNA Interval_61551 chr15 82281147 82281351 + 0 NA intron (ENSMUSG00000022456.18, intron 3 of 10) protein_coding-intron (ENSMUSG00000022456.18, intron 2 of 9) 12447 ENSMUSG00000022456.18 ENSMUSG00000022456 ENSMUST00000230507 Septin3 protein_coding Interval_116871 chr4 117869062 117869789 + 0 NA promoter-TSS (ENSMUSG00000078588.10) protein_coding-promoter-TSS (ENSMUSG00000078588.10) -867 ENSMUSG00000091237.1 ENSMUSG00000091237 ENSMUST00000164716 Gm17114 3prime_overlapping_ncRNA Interval_17038 chr10 70740942 70741154 + 0 NA Intergenic Intergenic -2204 ENSMUSG00000112607.1 ENSMUSG00000112607 ENSMUST00000219486 Gm33979 lincRNA Interval_89700 chr2 24774623 24775053 + 0 NA Intergenic Intergenic 89085 ENSMUSG00000036893.17 ENSMUSG00000036893 ENSMUST00000150379 Ehmt1 protein_coding Interval_45251 chr13 53519864 53520860 + 0 NA intron (ENSMUSG00000113834.1, intron 2 of 6) lincRNA-intron (ENSMUSG00000113834.1, intron 2 of 6) -5341 ENSMUSG00000063166.4 ENSMUSG00000063166 ENSMUST00000081132 Gm5449 processed_pseudogene Interval_62273 chr15 89378450 89379713 + 0 NA promoter-TSS (ENSMUSG00000047394.9) protein_coding-promoter-TSS (ENSMUSG00000047394.9) 506 ENSMUSG00000047394.9 ENSMUSG00000047394 ENSMUST00000228111 Odf3b protein_coding Interval_45094 chr13 52083299 52084676 + 0 NA Intergenic Intergenic 12655 ENSMUSG00000113090.1 ENSMUSG00000113090 ENSMUST00000222306 Gm48190 lincRNA Interval_110733 chr4 7627776 7629455 + 0 NA Intergenic Intergenic 67927 ENSMUSG00000086070.1 ENSMUSG00000086070 ENSMUST00000129988 8430436N08Rik lincRNA Interval_40176 chr12 102326618 102329061 + 0 NA intron (ENSMUSG00000044456.16, intron 3 of 9) protein_coding-intron (ENSMUSG00000044456.16, intron 3 of 9) 44671 ENSMUSG00000044456.16 ENSMUSG00000044456 ENSMUST00000139686 Rin3 protein_coding Interval_18910 chr10 93050114 93051720 + 0 NA intron (ENSMUSG00000020014.17, intron 5 of 67) protein_coding-intron (ENSMUSG00000020014.17, intron 5 of 17) -17955 ENSMUSG00000020014.17 ENSMUSG00000020014 ENSMUST00000171781 Cfap54 protein_coding Interval_52800 chr14 50719416 50720181 + 0 NA Intergenic Intergenic -11255 ENSMUSG00000096731.1 ENSMUSG00000096731 ENSMUST00000083041 Gm24316 snRNA Interval_174368 chrX 150477771 150478718 + 0 NA Intergenic Intergenic 14518 ENSMUSG00000081187.1 ENSMUSG00000081187 ENSMUST00000120793 3110067C02Rik processed_pseudogene Interval_19321 chr10 96661708 96662246 + 0 NA Intergenic Intergenic 44423 ENSMUSG00000036478.8 ENSMUSG00000036478 ENSMUST00000218953 Btg1 protein_coding Interval_67215 chr16 44496273 44496484 + 0 NA exon (ENSMUSG00000022687.12, exon 8 of 19) protein_coding-exon (ENSMUSG00000022687.12, exon 8 of 19) 61751 ENSMUSG00000093046.1 ENSMUSG00000093046 ENSMUST00000175305 Mir3081 miRNA Interval_87913 chr19 57072719 57073742 + 0 NA intron (ENSMUSG00000025085.16, intron 8 of 20) protein_coding-intron (ENSMUSG00000025085.16, intron 10 of 25) -135992 ENSMUSG00000025083.18 ENSMUSG00000025083 ENSMUST00000132851 Afap1l2 protein_coding Interval_156995 chr8 63998967 63999375 + 0 NA TTS (ENSMUSG00000110305.1) processed_pseudogene-TTS (ENSMUSG00000110305.1) 456 ENSMUSG00000110305.1 ENSMUSG00000110305 ENSMUST00000210228 Gm45513 processed_pseudogene Interval_131111 chr5 135208160 135208694 + 0 NA promoter-TSS (ENSMUSG00000002748.7) protein_coding-promoter-TSS (ENSMUSG00000002748.7) 439 ENSMUSG00000080473.1 ENSMUSG00000080473 ENSMUST00000116823 Gm25315 miRNA Interval_70540 chr17 11802097 11802296 + 0 NA intron (ENSMUSG00000023826.16, intron 6 of 10) protein_coding-intron (ENSMUSG00000023826.16, intron 7 of 11) -69851 ENSMUSG00000104466.1 ENSMUSG00000104466 ENSMUST00000194203 Gm10513 TEC Interval_125194 chr5 65259724 65259921 + 0 NA exon (ENSMUSG00000037890.13, exon 36 of 36) protein_coding-exon (ENSMUSG00000037890.13, exon 36 of 36) 13845 ENSMUSG00000029191.16 ENSMUSG00000029191 ENSMUST00000203644 Rfc1 protein_coding Interval_43548 chr13 33026904 33028890 + 0 NA intron (ENSMUSG00000021403.3, intron 1 of 5) protein_coding-intron (ENSMUSG00000021403.3, intron 1 of 6) 346 ENSMUSG00000021403.3 ENSMUSG00000021403 ENSMUST00000220566 Serpinb9b protein_coding Interval_81028 chr18 53136020 53136593 + 0 NA Intergenic Intergenic -40083 ENSMUSG00000034484.8 ENSMUSG00000034484 ENSMUST00000236111 Snx2 protein_coding Interval_136491 chr6 54917419 54918662 + 0 NA Intergenic Intergenic 15618 ENSMUSG00000107841.1 ENSMUSG00000107841 ENSMUST00000204539 Gm44185 TEC Interval_27771 chr11 69887155 69887538 + 0 NA exon (ENSMUSG00000001588.12, exon 1 of 6) protein_coding-exon (ENSMUSG00000001588.12, exon 1 of 6) 3145 ENSMUSG00000001588.12 ENSMUSG00000001588 ENSMUST00000148037 Acap1 protein_coding Interval_16076 chr10 60573920 60574125 + 0 NA intron (ENSMUSG00000012819.15, intron 5 of 65) protein_coding-intron (ENSMUSG00000012819.15, intron 5 of 66) 174118 ENSMUSG00000090439.3 ENSMUSG00000090439 ENSMUST00000218360 Gm17455 protein_coding Interval_32451 chr11 107610260 107611442 + 0 NA intron (ENSMUSG00000020721.16, intron 12 of 32) protein_coding-intron (ENSMUSG00000020721.16, intron 11 of 31) -26871 ENSMUSG00000098497.1 ENSMUSG00000098497 ENSMUST00000185044 Mir6932 miRNA Interval_85038 chr19 21731708 21732132 + 0 NA Intergenic Intergenic 2650 ENSMUSG00000118055.1 ENSMUSG00000118055 ENSMUST00000235761 Gm50129 processed_pseudogene Interval_30527 chr11 94950227 94950565 + 0 NA exon (ENSMUSG00000001506.10, exon 48 of 51) protein_coding-exon (ENSMUSG00000001506.10, exon 48 of 51) -8382 ENSMUSG00000089404.1 ENSMUSG00000089404 ENSMUST00000158779 Gm24877 misc_RNA Interval_124018 chr5 37288014 37289572 + 0 NA TTS (ENSMUSG00000029122.11) protein_coding-TTS (ENSMUSG00000029122.11) 8987 ENSMUSG00000107307.1 ENSMUSG00000107307 ENSMUST00000202004 Gm42935 processed_pseudogene Interval_86226 chr19 37945274 37945555 + 0 NA intron (ENSMUSG00000048612.16, intron 27 of 53) protein_coding-intron (ENSMUSG00000048612.16, intron 26 of 52) 75144 ENSMUSG00000118115.1 ENSMUSG00000118115 ENSMUST00000237198 Gm4757 processed_pseudogene Interval_146052 chr7 43518531 43519021 + 0 NA promoter-TSS (ENSMUSG00000108695.1) lincRNA-promoter-TSS (ENSMUSG00000108695.1) -229 ENSMUSG00000108695.1 ENSMUSG00000108695 ENSMUST00000206605 Gm2511 lincRNA Interval_153024 chr7 140950310 140951352 + 0 NA promoter-TSS (ENSMUSG00000025489.5) protein_coding-promoter-TSS (ENSMUSG00000025489.5) -540 ENSMUSG00000025489.5 ENSMUSG00000025489 ENSMUST00000026562 Ifitm5 protein_coding Interval_107142 chr3 103856135 103857225 + 0 NA Intergenic Intergenic -6486 ENSMUSG00000084760.1 ENSMUSG00000084760 ENSMUST00000141652 Gm15472 sense_intronic Interval_158996 chr8 88562424 88563148 + 0 NA exon (ENSMUSG00000110187.1, exon 1 of 1) TEC-exon (ENSMUSG00000110187.1, exon 1 of 1) 2753 ENSMUSG00000110187.1 ENSMUSG00000110187 ENSMUST00000209918 Gm45496 TEC Interval_49755 chr13 114534327 114535255 + 0 NA Intergenic Intergenic -45704 ENSMUSG00000093072.1 ENSMUSG00000093072 ENSMUST00000175331 Gm25950 miRNA Interval_149415 chr7 98323628 98323938 + 0 NA Intergenic Intergenic 36404 ENSMUSG00000049580.12 ENSMUSG00000049580 ENSMUST00000206770 Tsku protein_coding Interval_79924 chr18 35958938 35960621 + 0 NA Intergenic Intergenic -5288 ENSMUSG00000024347.16 ENSMUSG00000024347 ENSMUST00000175720 Psd2 protein_coding Interval_132473 chr5 145166624 145167734 + 0 NA promoter-TSS (ENSMUSG00000029624.10) protein_coding-promoter-TSS (ENSMUSG00000029624.10) -75 ENSMUSG00000029625.16 ENSMUSG00000029625 ENSMUST00000160437 Cpsf4 protein_coding Interval_113615 chr4 57004520 57005374 + 0 NA intron (ENSMUSG00000028434.12, intron 4 of 5) protein_coding-intron (ENSMUSG00000028434.12, intron 4 of 5) -14811 ENSMUSG00000045589.7 ENSMUSG00000045589 ENSMUST00000128276 Frrs1l protein_coding Interval_71366 chr17 22726016 22726399 + 0 NA Intergenic Intergenic -8756 ENSMUSG00000098210.1 ENSMUSG00000098210 ENSMUST00000183060 Gm5224 processed_pseudogene Interval_32716 chr11 109929508 109929826 + 0 NA Intergenic Intergenic -6649 ENSMUSG00000085629.1 ENSMUSG00000085629 ENSMUST00000149226 Gm11697 antisense Interval_154290 chr8 14059564 14059859 + 0 NA intron (ENSMUSG00000051978.9, intron 3 of 4) protein_coding-intron (ENSMUSG00000051978.9, intron 3 of 5) 8107 ENSMUSG00000109982.1 ENSMUSG00000109982 ENSMUST00000210109 Gm45520 TEC Interval_41860 chr13 3610059 3611662 + 0 NA promoter-TSS (ENSMUSG00000033799.10) protein_coding-promoter-TSS (ENSMUSG00000033799.10) -53 ENSMUSG00000033799.10 ENSMUSG00000033799 ENSMUST00000223327 Tasor2 protein_coding Interval_90934 chr2 33575358 33576084 + 0 NA intron (ENSMUSG00000038765.14, intron 2 of 7) protein_coding-intron (ENSMUSG00000038765.14, intron 2 of 7) -38677 ENSMUSG00000104403.1 ENSMUSG00000104403 ENSMUST00000193312 Gm38011 TEC Interval_94077 chr2 83684493 83685354 + 0 NA Intergenic Intergenic 16193 ENSMUSG00000085450.1 ENSMUSG00000085450 ENSMUST00000122851 Gm13686 antisense Interval_154876 chr8 24561601 24562322 + 0 NA intron (ENSMUSG00000031549.16, intron 1 of 9) protein_coding-intron (ENSMUSG00000031549.16, intron 1 of 9) -7364 ENSMUSG00000031549.16 ENSMUSG00000031549 ENSMUST00000138155 Ido2 protein_coding Interval_122745 chr5 25058397 25059690 + 0 NA intron (ENSMUSG00000028944.14, intron 1 of 15) protein_coding-intron (ENSMUSG00000028944.14, intron 1 of 15) -41940 ENSMUSG00000043833.6 ENSMUSG00000043833 ENSMUST00000128569 2900005J15Rik processed_transcript Interval_29995 chr11 88599405 88601436 + 0 NA intron (ENSMUSG00000069769.13, intron 5 of 5) protein_coding-intron (ENSMUSG00000069769.13, intron 5 of 13) -10273 ENSMUSG00000069769.13 ENSMUSG00000069769 ENSMUST00000126293 Msi2 protein_coding Interval_140016 chr6 113441136 113443360 + 0 NA promoter-TSS (ENSMUSG00000051256.10) protein_coding-promoter-TSS (ENSMUSG00000051256.10) -347 ENSMUSG00000051256.10 ENSMUSG00000051256 ENSMUST00000204254 Jagn1 protein_coding Interval_48863 chr13 104139512 104140317 + 0 NA TTS (ENSMUSG00000042743.13) protein_coding-TTS (ENSMUSG00000042743.13) 30141 ENSMUSG00000042743.13 ENSMUSG00000042743 ENSMUST00000159574 Sgtb protein_coding Interval_2472 chr1 39614066 39615576 + 0 NA Intergenic Intergenic -16816 ENSMUSG00000102471.1 ENSMUSG00000102471 ENSMUST00000195631 Gm5100 processed_pseudogene Interval_136278 chr6 52473297 52473761 + 0 NA Intergenic Intergenic -18922 ENSMUSG00000107895.1 ENSMUSG00000107895 ENSMUST00000203771 1700094M24Rik lincRNA Interval_130224 chr5 125056215 125059717 + 0 NA exon (ENSMUSG00000029478.16, exon 1 of 18) protein_coding-exon (ENSMUSG00000029478.16, exon 1 of 18) 125 ENSMUSG00000105604.1 ENSMUSG00000105604 ENSMUST00000196503 Gm42838 antisense Interval_79848 chr18 35561735 35563336 + 0 NA promoter-TSS (ENSMUSG00000037236.16) protein_coding-promoter-TSS (ENSMUSG00000037236.16) 343 ENSMUSG00000037236.16 ENSMUSG00000037236 ENSMUST00000235551 Matr3 protein_coding Interval_153606 chr8 3678832 3679637 + 0 NA exon (ENSMUSG00000040236.4, exon 2 of 2) protein_coding-exon (ENSMUSG00000040236.4, exon 2 of 2) -2280 ENSMUSG00000108888.1 ENSMUSG00000108888 ENSMUST00000208629 Gm45231 antisense Interval_60684 chr15 76149329 76150338 + 0 NA promoter-TSS (ENSMUSG00000116475.1) processed_pseudogene-promoter-TSS (ENSMUSG00000116475.1) -535 ENSMUSG00000116475.1 ENSMUSG00000116475 ENSMUST00000229700 Gm19945 processed_pseudogene Interval_47643 chr13 90637827 90638138 + 0 NA Intergenic Intergenic 3897 ENSMUSG00000103069.1 ENSMUSG00000103069 ENSMUST00000192217 Gm36966 TEC Interval_461 chr1 5778089 5779590 + 0 NA Intergenic Intergenic 65833 ENSMUSG00000103519.1 ENSMUSG00000103519 ENSMUST00000193807 Gm37429 TEC Interval_96503 chr2 125133542 125134283 + 0 NA intron (ENSMUSG00000087056.1, intron 1 of 3) processed_transcript-intron (ENSMUSG00000087056.1, intron 1 of 3) 415 ENSMUSG00000087056.1 ENSMUSG00000087056 ENSMUST00000138875 Gm14004 processed_transcript Interval_49071 chr13 107715400 107717025 + 0 NA Intergenic Intergenic 28815 ENSMUSG00000102000.6 ENSMUSG00000102000 ENSMUST00000188490 1700006H21Rik lincRNA Interval_116811 chr4 117397698 117397917 + 0 NA intron (ENSMUSG00000028677.19, intron 2 of 2) protein_coding-intron (ENSMUSG00000028677.19, intron 2 of 14) -48143 ENSMUSG00000086876.1 ENSMUSG00000086876 ENSMUST00000136115 Gm12828 antisense Interval_63350 chr15 100485791 100488613 + 0 NA intron (ENSMUSG00000044636.6, intron 3 of 4) protein_coding-intron (ENSMUSG00000044636.6, intron 3 of 4) 8286 ENSMUSG00000044636.6 ENSMUSG00000044636 ENSMUST00000061457 Csrnp2 protein_coding Interval_45212 chr13 53218590 53218917 + 0 NA intron (ENSMUSG00000021464.14, intron 1 of 8) protein_coding-intron (ENSMUSG00000021464.14, intron 1 of 8) 56905 ENSMUSG00000021464.14 ENSMUSG00000021464 ENSMUST00000149299 Ror2 protein_coding Interval_39673 chr12 92005478 92006862 + 0 NA Intergenic Intergenic 3005 ENSMUSG00000112953.1 ENSMUSG00000112953 ENSMUST00000223280 Gm47984 processed_pseudogene Interval_139833 chr6 109816527 109816803 + 0 NA Intergenic Intergenic -216724 ENSMUSG00000107930.1 ENSMUSG00000107930 ENSMUST00000203543 Gm44162 processed_pseudogene Interval_4485 chr1 74493504 74493852 + 0 NA intron (ENSMUSG00000033364.13, intron 3 of 19) protein_coding-intron (ENSMUSG00000033364.13, intron 3 of 23) 9623 ENSMUSG00000103227.1 ENSMUSG00000103227 ENSMUST00000195478 Gm37733 TEC Interval_56065 chr14 105280027 105280225 + 0 NA intron (ENSMUSG00000053253.16, intron 1 of 7) protein_coding-intron (ENSMUSG00000053253.16, intron 1 of 7) -3140 ENSMUSG00000064715.1 ENSMUSG00000064715 ENSMUST00000082781 Gm24207 snRNA Interval_37630 chr12 70554720 70555343 + 0 NA Intergenic Intergenic 32433 ENSMUSG00000113302.1 ENSMUSG00000113302 ENSMUST00000221234 Gm32219 lincRNA Interval_122359 chr5 21678033 21678641 + 0 NA intron (ENSMUSG00000044968.16, intron 2 of 4) protein_coding-intron (ENSMUSG00000044968.16, intron 2 of 4) -11204 ENSMUSG00000081242.1 ENSMUSG00000081242 ENSMUST00000120619 Gm15719 processed_pseudogene Interval_160051 chr8 106039915 106040121 + 0 NA intron (ENSMUSG00000031901.12, intron 2 of 5) protein_coding-intron (ENSMUSG00000031901.12, intron 7 of 15) -8690 ENSMUSG00000031901.12 ENSMUSG00000031901 ENSMUST00000144904 Dus2 protein_coding Interval_42234 chr13 10556800 10557098 + 0 NA intron (ENSMUSG00000097009.2, intron 2 of 3) antisense-intron (ENSMUSG00000097009.2, intron 5 of 7) 758 ENSMUSG00000113243.1 ENSMUSG00000113243 ENSMUST00000222590 Gm36525 lincRNA Interval_68075 chr16 64865359 64866531 + 0 NA Intergenic Intergenic 13243 ENSMUSG00000054604.7 ENSMUSG00000054604 ENSMUST00000136532 Cggbp1 protein_coding Interval_53208 chr14 55121813 55122403 + 0 NA Intergenic Intergenic -5209 ENSMUSG00000115250.1 ENSMUSG00000115250 ENSMUST00000228398 Gm49020 TEC Interval_45802 chr13 58172899 58173111 + 0 NA Intergenic Intergenic 8620 ENSMUSG00000005312.15 ENSMUSG00000005312 ENSMUST00000225645 Ubqln1 protein_coding Interval_81744 chr18 64339446 64341623 + 0 NA exon (ENSMUSG00000045991.19, exon 1 of 2) protein_coding-exon (ENSMUSG00000045991.19, exon 1 of 2) 514 ENSMUSG00000045991.19 ENSMUSG00000045991 ENSMUST00000175965 Onecut2 protein_coding Interval_125812 chr5 74455267 74455896 + 0 NA TTS (ENSMUSG00000062110.14) protein_coding-TTS (ENSMUSG00000062110.14) -24476 ENSMUSG00000106992.1 ENSMUSG00000106992 ENSMUST00000202001 Gm43167 TEC Interval_63979 chr16 4979745 4980417 + 0 NA Intergenic Intergenic 15604 ENSMUSG00000022543.9 ENSMUSG00000022543 ENSMUST00000229605 4930451G09Rik transcribed_unitary_pseudogene Interval_162215 chr8 126032317 126032542 + 0 NA intron (ENSMUSG00000110698.1, intron 2 of 2) antisense-intron (ENSMUSG00000110698.1, intron 2 of 2) 14379 ENSMUSG00000110698.1 ENSMUSG00000110698 ENSMUST00000212178 Gm45875 antisense Interval_138623 chr6 90520080 90520933 + 0 NA intron (ENSMUSG00000030088.15, intron 1 of 2) protein_coding-intron (ENSMUSG00000030088.15, intron 1 of 2) 7204 ENSMUSG00000108271.1 ENSMUSG00000108271 ENSMUST00000204492 Gm44236 TEC Interval_28464 chr11 76099647 76100257 + 0 NA intron (ENSMUSG00000017288.15, intron 8 of 17) protein_coding-intron (ENSMUSG00000017288.15, intron 12 of 21) -44306 ENSMUSG00000080701.1 ENSMUSG00000080701 ENSMUST00000121617 Gm12340 unprocessed_pseudogene Interval_20681 chr10 120206790 120207245 + 0 NA intron (ENSMUSG00000020225.10, intron 1 of 2) protein_coding-intron (ENSMUSG00000020225.10, intron 1 of 2) -4887 ENSMUSG00000020227.10 ENSMUSG00000020227 ENSMUST00000143100 Irak3 protein_coding Interval_119722 chr4 139491660 139492076 + 0 NA Intergenic Intergenic -82852 ENSMUSG00000041025.15 ENSMUSG00000041025 ENSMUST00000174078 Iffo2 protein_coding Interval_38472 chr12 79264424 79264865 + 0 NA intron (ENSMUSG00000066440.5, intron 3 of 9) protein_coding-intron (ENSMUSG00000066440.5, intron 23 of 41) -20233 ENSMUSG00000066440.5 ENSMUSG00000066440 ENSMUST00000219571 Zfyve26 protein_coding Interval_109423 chr3 142262129 142262869 + 0 NA intron (ENSMUSG00000028273.15, intron 3 of 4) protein_coding-intron (ENSMUSG00000028273.15, intron 8 of 12) 41480 ENSMUSG00000028273.15 ENSMUSG00000028273 ENSMUST00000058626 Pdlim5 protein_coding Interval_2891 chr1 48169020 48169543 + 0 NA Intergenic Intergenic 145570 ENSMUSG00000096973.1 ENSMUSG00000096973 ENSMUST00000181607 Gm5974 processed_pseudogene Interval_14617 chr10 37071501 37073612 + 0 NA Intergenic Intergenic -57188 ENSMUSG00000103299.1 ENSMUSG00000103299 ENSMUST00000192030 Gm38231 TEC Interval_99622 chr2 163640591 163641755 + 0 NA intron (ENSMUSG00000017707.9, intron 1 of 9) protein_coding-intron (ENSMUSG00000017707.9, intron 1 of 9) -3677 ENSMUSG00000058812.2 ENSMUSG00000058812 ENSMUST00000184724 0610039K10Rik antisense Interval_161817 chr8 122978614 122980629 + 0 NA intron (ENSMUSG00000035569.17, intron 1 of 2) protein_coding-intron (ENSMUSG00000035569.17, intron 1 of 12) 3322 ENSMUSG00000065915.1 ENSMUSG00000065915 ENSMUST00000083981 Gm24445 snRNA Interval_25599 chr11 50138428 50140322 + 0 NA intron (ENSMUSG00000036644.15, intron 3 of 3) protein_coding-intron (ENSMUSG00000036644.15, intron 2 of 20) -4371 ENSMUSG00000085192.1 ENSMUSG00000085192 ENSMUST00000144990 Gm12195 antisense Interval_83079 chr18 81104400 81104656 + 0 NA Intergenic Intergenic 21464 ENSMUSG00000118262.1 ENSMUSG00000118262 ENSMUST00000237649 Gm50423 lincRNA Interval_32601 chr11 109050407 109050680 + 0 NA Intergenic Intergenic 16547 ENSMUSG00000064691.1 ENSMUSG00000064691 ENSMUST00000082757 Gm24149 snRNA Interval_94792 chr2 94362311 94362528 + 0 NA exon (ENSMUSG00000027194.16, exon 5 of 15) protein_coding-exon (ENSMUSG00000027194.16, exon 5 of 15) 22679 ENSMUSG00000081476.1 ENSMUSG00000081476 ENSMUST00000117207 Itpa-ps1 processed_pseudogene Interval_71526 chr17 24315786 24316912 + 0 NA intron (ENSMUSG00000035435.17, intron 11 of 30) protein_coding-intron (ENSMUSG00000035435.17, intron 10 of 29) 11680 ENSMUSG00000094175.1 ENSMUSG00000094175 ENSMUST00000116896 Gm24427 miRNA Interval_102505 chr3 27279958 27280633 + 0 NA intron (ENSMUSG00000027698.14, intron 4 of 4) protein_coding-intron (ENSMUSG00000027698.14, intron 4 of 4) 2235 ENSMUSG00000102186.1 ENSMUSG00000102186 ENSMUST00000193346 Gm37191 processed_pseudogene Interval_151221 chr7 119816702 119817018 + 0 NA intron (ENSMUSG00000030924.16, intron 2 of 3) protein_coding-intron (ENSMUSG00000030924.16, intron 5 of 12) -22802 ENSMUSG00000030929.17 ENSMUSG00000030929 ENSMUST00000133926 Eri2 protein_coding Interval_123111 chr5 29764020 29764302 + 0 NA promoter-TSS (ENSMUSG00000029131.14) protein_coding-promoter-TSS (ENSMUSG00000029131.14) 28172 ENSMUSG00000029131.14 ENSMUSG00000029131 ENSMUST00000139126 Dnajb6 protein_coding Interval_113855 chr4 59372889 59373736 + 0 NA intron (ENSMUSG00000038578.15, intron 8 of 16) protein_coding-intron (ENSMUSG00000038578.15, intron 8 of 16) -4446 ENSMUSG00000083979.1 ENSMUSG00000083979 ENSMUST00000117967 Gm12527 processed_pseudogene Interval_49251 chr13 109816022 109816367 + 0 NA intron (ENSMUSG00000021699.17, intron 6 of 15) protein_coding-intron (ENSMUSG00000021699.17, intron 5 of 14) -87615 ENSMUSG00000084651.1 ENSMUSG00000084651 ENSMUST00000122702 Mir1904 miRNA Interval_141360 chr6 127657340 127658066 + 0 NA exon (ENSMUSG00000107253.1, exon 3 of 4) lincRNA-exon (ENSMUSG00000107253.1, exon 3 of 4) 13263 ENSMUSG00000107253.1 ENSMUSG00000107253 ENSMUST00000202671 Gm43634 lincRNA Interval_147767 chr7 73454060 73454276 + 0 NA intron (ENSMUSG00000078671.11, intron 7 of 14) protein_coding-intron (ENSMUSG00000078671.11, intron 4 of 5) 6465 ENSMUSG00000108741.1 ENSMUSG00000108741 ENSMUST00000206316 Gm44553 TEC Interval_58485 chr15 35135259 35136828 + 0 NA intron (ENSMUSG00000022329.15, intron 1 of 10) protein_coding-intron (ENSMUSG00000022329.15, intron 1 of 10) -64761 ENSMUSG00000115345.1 ENSMUSG00000115345 ENSMUST00000228112 Gm33497 lincRNA Interval_64369 chr16 10890351 10890597 + 0 NA exon (ENSMUSG00000037991.9, exon 3 of 6) protein_coding-exon (ENSMUSG00000037991.9, exon 3 of 6) 46832 ENSMUSG00000095369.2 ENSMUSG00000095369 ENSMUST00000233047 Gm21859 processed_transcript Interval_81544 chr18 61609523 61610781 + 0 NA Intergenic Intergenic -29501 ENSMUSG00000098098.7 ENSMUSG00000098098 ENSMUST00000183087 Bvht lincRNA Interval_48867 chr13 104163291 104164242 + 0 NA intron (ENSMUSG00000021711.17, intron 4 of 12) protein_coding-intron (ENSMUSG00000021711.17, intron 4 of 12) 14641 ENSMUSG00000021711.17 ENSMUSG00000021711 ENSMUST00000142745 Trappc13 protein_coding Interval_92014 chr2 52589538 52589786 + 0 NA intron (ENSMUSG00000017412.15, intron 2 of 13) protein_coding-intron (ENSMUSG00000017412.15, intron 2 of 13) -30092 ENSMUSG00000025201.7 ENSMUSG00000025201 ENSMUST00000183232 Bloc1s2-ps processed_pseudogene Interval_146511 chr7 46521237 46521815 + 0 NA intron (ENSMUSG00000030839.12, intron 9 of 11) protein_coding-intron (ENSMUSG00000030839.12, intron 9 of 10) -8746 ENSMUSG00000110316.1 ENSMUSG00000110316 ENSMUST00000211086 Gm45311 sense_intronic Interval_109067 chr3 135550477 135550721 + 0 NA promoter-TSS (ENSMUSG00000028164.15) protein_coding-promoter-TSS (ENSMUSG00000028164.15) -12592 ENSMUSG00000028164.15 ENSMUSG00000028164 ENSMUST00000153412 Manba protein_coding Interval_48363 chr13 98520416 98520618 + 0 NA Intergenic Intergenic -2579 ENSMUSG00000104430.1 ENSMUSG00000104430 ENSMUST00000193184 Gm37425 TEC Interval_99450 chr2 161216350 161216557 + 0 NA exon (ENSMUSG00000067745.4, exon 3 of 3) lincRNA-exon (ENSMUSG00000067745.4, exon 3 of 3) -9173 ENSMUSG00000085469.1 ENSMUSG00000085469 ENSMUST00000145204 Gm14242 lincRNA Interval_56516 chr14 119719247 119719691 + 0 NA intron (ENSMUSG00000053465.6, intron 1 of 1) protein_coding-intron (ENSMUSG00000053465.6, intron 1 of 1) -29756 ENSMUSG00000100274.1 ENSMUSG00000100274 ENSMUST00000188582 1700006F04Rik sense_intronic Interval_85204 chr19 23732961 23733433 + 0 NA Intergenic Intergenic 14804 ENSMUSG00000117685.1 ENSMUSG00000117685 ENSMUST00000238019 Gm50299 lincRNA Interval_58822 chr15 38322399 38322714 + 0 NA intron (ENSMUSG00000115456.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000115456.1, intron 1 of 2) 10263 ENSMUSG00000115456.1 ENSMUSG00000115456 ENSMUST00000227097 Gm35248 lincRNA Interval_158142 chr8 79153095 79154260 + 0 NA intron (ENSMUSG00000071064.15, intron 8 of 13) protein_coding-intron (ENSMUSG00000071064.15, intron 8 of 14) -72253 ENSMUSG00000110388.1 ENSMUSG00000110388 ENSMUST00000211572 Gm30329 antisense Interval_19200 chr10 95460954 95461872 + 0 NA promoter-TSS (ENSMUSG00000112261.1) lincRNA-promoter-TSS (ENSMUSG00000112261.1) -189 ENSMUSG00000112261.1 ENSMUSG00000112261 ENSMUST00000219379 Gm47599 lincRNA Interval_143283 chr7 4943151 4943742 + 0 NA TTS (ENSMUSG00000035279.8) protein_coding-TTS (ENSMUSG00000035279.8) 6356 ENSMUSG00000035279.8 ENSMUSG00000035279 ENSMUST00000207310 Ssc5d protein_coding Interval_111671 chr4 25670214 25671638 + 0 NA intron (ENSMUSG00000055373.8, intron 1 of 1) protein_coding-intron (ENSMUSG00000055373.8, intron 2 of 2) -104104 ENSMUSG00000065040.1 ENSMUSG00000065040 ENSMUST00000083106 Gm24977 snRNA Interval_100974 chr2 173764608 173764898 + 0 NA intron (ENSMUSG00000054455.5, intron 2 of 5) protein_coding-intron (ENSMUSG00000054455.5, intron 2 of 5) -3447 ENSMUSG00000054455.5 ENSMUSG00000054455 ENSMUST00000154306 Vapb protein_coding Interval_56642 chr14 121093483 121094475 + 0 NA intron (ENSMUSG00000025555.14, intron 1 of 26) protein_coding-intron (ENSMUSG00000025555.14, intron 1 of 26) -8100 ENSMUSG00000025555.14 ENSMUSG00000025555 ENSMUST00000137971 Farp1 protein_coding Interval_155471 chr8 33800996 33802062 + 0 NA intron (ENSMUSG00000031586.17, intron 1 of 4) protein_coding-intron (ENSMUSG00000031586.17, intron 5 of 7) -11674 ENSMUSG00000097442.1 ENSMUSG00000097442 ENSMUST00000181120 Gm26632 antisense Interval_43199 chr13 25114757 25116502 + 0 NA intron (ENSMUSG00000035910.15, intron 5 of 5) protein_coding-intron (ENSMUSG00000035910.15, intron 6 of 7) 15435 ENSMUSG00000082667.1 ENSMUSG00000082667 ENSMUST00000118813 Gm11348 processed_pseudogene Interval_172624 chrX 38502337 38502953 + 0 NA Intergenic Intergenic 26184 ENSMUSG00000087390.1 ENSMUSG00000087390 ENSMUST00000130251 Gm7598 lincRNA Interval_104349 chr3 63905346 63905529 + 0 NA promoter-TSS (ENSMUSG00000103905.1) processed_pseudogene-promoter-TSS (ENSMUSG00000103905.1) 8 ENSMUSG00000103905.1 ENSMUSG00000103905 ENSMUST00000195036 Gm34379 processed_pseudogene Interval_157862 chr8 75033286 75034524 + 0 NA promoter-TSS (ENSMUSG00000110593.1) antisense-promoter-TSS (ENSMUSG00000110593.1) 36 ENSMUSG00000110593.1 ENSMUSG00000110593 ENSMUST00000212231 Gm45822 antisense Interval_138263 chr6 86702214 86703091 + 0 NA intron (ENSMUSG00000001157.13, intron 11 of 13) protein_coding-intron (ENSMUSG00000001157.13, intron 11 of 13) -14224 ENSMUSG00000108197.1 ENSMUSG00000108197 ENSMUST00000204153 Gm44214 lincRNA Interval_71932 chr17 27077072 27079125 + 0 NA intron (ENSMUSG00000042644.9, intron 2 of 57) protein_coding-intron (ENSMUSG00000042644.9, intron 2 of 57) -13147 ENSMUSG00000098826.1 ENSMUSG00000098826 ENSMUST00000184226 Mir7677 miRNA Interval_31635 chr11 101918426 101919931 + 0 NA Intergenic Intergenic -20323 ENSMUSG00000082171.1 ENSMUSG00000082171 ENSMUST00000120378 Rpl27-ps2 processed_pseudogene Interval_8798 chr1 151244071 151244250 + 0 NA Intergenic Intergenic 16754 ENSMUSG00000088498.1 ENSMUSG00000088498 ENSMUST00000157873 Gm24402 snRNA Interval_78760 chr18 20475856 20476314 + 0 NA Intergenic Intergenic -23230 ENSMUSG00000117480.1 ENSMUSG00000117480 ENSMUST00000234005 Gm5688 processed_pseudogene Interval_173058 chrX 69003675 69004383 + 0 NA Intergenic Intergenic -54345 ENSMUSG00000065689.1 ENSMUSG00000065689 ENSMUST00000083755 n-R5s7 rRNA Interval_35115 chr12 17399755 17400178 + 0 NA intron (ENSMUSG00000061458.9, intron 13 of 20) protein_coding-intron (ENSMUSG00000061458.9, intron 13 of 20) -36652 ENSMUSG00000113246.1 ENSMUSG00000113246 ENSMUST00000220527 Gm36752 lincRNA Interval_174438 chrX 152286813 152287747 + 0 NA Intergenic Intergenic -16721 ENSMUSG00000084584.1 ENSMUSG00000084584 ENSMUST00000122635 n-R5s15 rRNA Interval_172627 chrX 38521284 38521576 + 0 NA Intergenic Intergenic 43232 ENSMUSG00000031095.15 ENSMUSG00000031095 ENSMUST00000050083 Cul4b protein_coding Interval_170146 chr9 105544052 105545345 + 0 NA TTS (ENSMUSG00000101464.1) processed_pseudogene-TTS (ENSMUSG00000101464.1) 1129 ENSMUSG00000101464.1 ENSMUSG00000101464 ENSMUST00000187229 Gm7436 processed_pseudogene Interval_118985 chr4 134867778 134868519 + 0 NA intron (ENSMUSG00000028825.7, intron 1 of 9) protein_coding-intron (ENSMUSG00000028825.7, intron 1 of 9) -11662 ENSMUSG00000028825.7 ENSMUSG00000028825 ENSMUST00000136163 Rhd protein_coding Interval_51645 chr14 31053763 31054045 + 0 NA intron (ENSMUSG00000042323.17, intron 12 of 25) protein_coding-intron (ENSMUSG00000042323.17, intron 12 of 27) -10784 ENSMUSG00000115412.1 ENSMUSG00000115412 ENSMUST00000226537 Gm49094 processed_pseudogene Interval_30764 chr11 96340357 96342253 + 0 NA intron (ENSMUSG00000048763.11, intron 2 of 2) protein_coding-intron (ENSMUSG00000048763.11, intron 2 of 3) 360 ENSMUSG00000048763.11 ENSMUSG00000048763 ENSMUST00000055334 Hoxb3 protein_coding Interval_47427 chr13 83976586 83976938 + 0 NA intron (ENSMUSG00000114379.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000114379.1, intron 1 of 1) 11229 ENSMUSG00000114379.1 ENSMUSG00000114379 ENSMUST00000223760 Gm4241 lincRNA Interval_35867 chr12 31350612 31351896 + 0 NA intron (ENSMUSG00000020664.10, intron 1 of 2) protein_coding-intron (ENSMUSG00000020664.10, intron 1 of 13) 160 ENSMUSG00000020664.10 ENSMUSG00000020664 ENSMUST00000220415 Dld protein_coding Interval_170030 chr9 103808698 103808888 + 0 NA Intergenic Intergenic -46964 ENSMUSG00000042757.16 ENSMUSG00000042757 ENSMUST00000186455 Tmem108 protein_coding Interval_153938 chr8 11375814 11376436 + 0 NA intron (ENSMUSG00000031503.13, intron 4 of 47) protein_coding-intron (ENSMUSG00000031503.13, intron 4 of 47) 41767 ENSMUSG00000084783.1 ENSMUSG00000084783 ENSMUST00000148654 Gm15419 antisense Interval_151917 chr7 127533815 127534075 + 0 NA exon (ENSMUSG00000053877.12, exon 1 of 1) protein_coding-exon (ENSMUSG00000053877.12, exon 1 of 1) 6071 ENSMUSG00000065259.1 ENSMUSG00000065259 ENSMUST00000083325 Snora30 snoRNA Interval_148097 chr7 79202319 79202982 + 0 NA Intergenic Intergenic -54419 ENSMUSG00000030605.15 ENSMUSG00000030605 ENSMUST00000206844 Mfge8 protein_coding Interval_16661 chr10 66901476 66902345 + 0 NA Intergenic Intergenic -10298 ENSMUSG00000112267.1 ENSMUSG00000112267 ENSMUST00000217953 Gm47903 lincRNA Interval_165342 chr9 46423058 46424009 + 0 NA Intergenic Intergenic 26171 ENSMUSG00000110802.1 ENSMUSG00000110802 ENSMUST00000213920 Gm47141 lincRNA Interval_5428 chr1 88717922 88718380 + 0 NA Intergenic Intergenic 4673 ENSMUSG00000101736.1 ENSMUSG00000101736 ENSMUST00000188361 Gm29335 processed_pseudogene Interval_42392 chr13 12604698 12604930 + 0 NA intron (ENSMUSG00000057069.7, intron 15 of 15) protein_coding-intron (ENSMUSG00000057069.7, intron 15 of 15) 15035 ENSMUSG00000097715.2 ENSMUSG00000097715 ENSMUST00000222447 Gpr137b-ps transcribed_unprocessed_pseudogene Interval_57873 chr15 24184445 24184817 + 0 NA Intergenic Intergenic 20939 ENSMUSG00000115528.1 ENSMUSG00000115528 ENSMUST00000228146 Gm8408 processed_pseudogene Interval_154980 chr8 25465316 25466336 + 0 NA intron (ENSMUSG00000110063.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000110063.1, intron 1 of 2) 11553 ENSMUSG00000074412.4 ENSMUSG00000074412 ENSMUST00000098864 Gm10689 processed_pseudogene Interval_2613 chr1 42238245 42238693 + 0 NA exon (ENSMUSG00000101919.1, exon 1 of 1) lincRNA-exon (ENSMUSG00000101919.1, exon 1 of 1) 226 ENSMUSG00000101919.1 ENSMUSG00000101919 ENSMUST00000191125 Gm29664 lincRNA Interval_39489 chr12 88404644 88405378 + 0 NA intron (ENSMUSG00000021044.15, intron 4 of 10) protein_coding-intron (ENSMUSG00000021044.15, intron 4 of 10) -15285 ENSMUSG00000021044.15 ENSMUSG00000021044 ENSMUST00000223538 Adck1 protein_coding Interval_159661 chr8 96269094 96269628 + 0 NA Intergenic Intergenic -40158 ENSMUSG00000110623.1 ENSMUSG00000110623 ENSMUST00000212446 Gm32005 lincRNA Interval_57867 chr15 23568779 23569073 + 0 NA Intergenic Intergenic 55274 ENSMUSG00000115788.1 ENSMUSG00000115788 ENSMUST00000227313 Gm48915 processed_pseudogene Interval_126486 chr5 88907321 88908225 + 0 NA intron (ENSMUSG00000060961.16, intron 1 of 25) protein_coding-intron (ENSMUSG00000060961.16, intron 1 of 24) 21287 ENSMUSG00000060961.16 ENSMUSG00000060961 ENSMUST00000134303 Slc4a4 protein_coding Interval_34507 chr12 4733827 4734957 + 0 NA intron (ENSMUSG00000079177.4, intron 3 of 7) protein_coding-intron (ENSMUSG00000079177.4, intron 3 of 7) 3926 ENSMUSG00000079177.4 ENSMUSG00000079177 ENSMUST00000220075 Fam228a protein_coding Interval_59742 chr15 58987779 58988151 + 0 NA exon (ENSMUSG00000115062.1, exon 2 of 2) antisense-exon (ENSMUSG00000115062.1, exon 2 of 2) 3829 ENSMUSG00000115062.1 ENSMUSG00000115062 ENSMUST00000226216 4930544F09Rik antisense Interval_138921 chr6 93557558 93558859 + 0 NA Intergenic Intergenic 48635 ENSMUSG00000088630.1 ENSMUSG00000088630 ENSMUST00000158005 Gm22312 snoRNA Interval_126082 chr5 77264993 77266728 + 0 NA promoter-TSS (ENSMUSG00000029249.15) protein_coding-promoter-TSS (ENSMUSG00000029249.15) -336 ENSMUSG00000029249.15 ENSMUSG00000029249 ENSMUST00000113449 Rest protein_coding Interval_55130 chr14 78438309 78438560 + 0 NA Intergenic Intergenic -22858 ENSMUSG00000115450.1 ENSMUSG00000115450 ENSMUST00000227356 Gm4821 processed_pseudogene Interval_171832 chr9 121590698 121591398 + 0 NA intron (ENSMUSG00000084995.8, intron 1 of 3) protein_coding-intron (ENSMUSG00000032530.14, intron 1 of 5) -11796 ENSMUSG00000084995.8 ENSMUSG00000084995 ENSMUST00000213548 Lyzl4os antisense Interval_25125 chr11 44337302 44337658 + 0 NA Intergenic Intergenic 49794 ENSMUSG00000082790.1 ENSMUSG00000082790 ENSMUST00000121267 Gm12155 processed_pseudogene Interval_128508 chr5 113716620 113717275 + 0 NA intron (ENSMUSG00000042184.11, intron 2 of 2) protein_coding-intron (ENSMUSG00000042184.11, intron 2 of 2) 7825 ENSMUSG00000042184.11 ENSMUSG00000042184 ENSMUST00000047891 1700069L16Rik protein_coding Interval_132150 chr5 142974045 142975095 + 0 NA Intergenic Intergenic 14194 ENSMUSG00000029581.14 ENSMUSG00000029581 ENSMUST00000135293 Fscn1 protein_coding Interval_5814 chr1 92113525 92114435 + 0 NA promoter-TSS (ENSMUSG00000026313.16) protein_coding-promoter-TSS (ENSMUSG00000026313.16) 81714 ENSMUSG00000026313.16 ENSMUSG00000026313 ENSMUST00000212408 Hdac4 protein_coding Interval_107470 chr3 107931320 107932291 + 0 NA promoter-TSS (ENSMUSG00000004035.12) protein_coding-promoter-TSS (ENSMUSG00000004035.12) -226 ENSMUSG00000004035.12 ENSMUSG00000004035 ENSMUST00000124215 Gstm7 protein_coding Interval_48761 chr13 102878915 102879257 + 0 NA intron (ENSMUSG00000034751.17, intron 3 of 27) protein_coding-intron (ENSMUSG00000034751.17, intron 2 of 27) 116651 ENSMUSG00000090329.1 ENSMUSG00000090329 ENSMUST00000170645 Gm17160 antisense Interval_93417 chr2 72941793 72942918 + 0 NA intron (ENSMUSG00000027109.16, intron 3 of 4) protein_coding-intron (ENSMUSG00000027109.16, intron 4 of 5) 8632 ENSMUSG00000092851.1 ENSMUSG00000092851 ENSMUST00000175110 Gm25960 miRNA Interval_163819 chr9 26860363 26860585 + 0 NA intron (ENSMUSG00000031966.7, intron 1 of 19) protein_coding-intron (ENSMUSG00000031966.7, intron 1 of 19) -36130 ENSMUSG00000031966.7 ENSMUSG00000031966 ENSMUST00000209592 Glb1l3 protein_coding Interval_148523 chr7 82082115 82082345 + 0 NA TTS (ENSMUSG00000109145.1) lincRNA-TTS (ENSMUSG00000109145.1) 11843 ENSMUSG00000109145.1 ENSMUSG00000109145 ENSMUST00000208972 Gm20744 lincRNA Interval_54073 chr14 65017844 65018419 + 0 NA intron (ENSMUSG00000021975.9, intron 9 of 16) protein_coding-intron (ENSMUSG00000021975.9, intron 9 of 16) 68086 ENSMUSG00000021975.9 ENSMUSG00000021975 ENSMUST00000225790 Ints9 protein_coding Interval_110769 chr4 8189420 8192023 + 0 NA intron (ENSMUSG00000041261.9, intron 3 of 8) protein_coding-intron (ENSMUSG00000041261.9, intron 3 of 8) -23368 ENSMUSG00000079993.2 ENSMUSG00000079993 ENSMUST00000116110 Gm11799 processed_pseudogene Interval_28136 chr11 73086122 73087247 + 0 NA exon (ENSMUSG00000020783.14, exon 13 of 13) protein_coding-exon (ENSMUSG00000020783.14, exon 13 of 13) -3899 ENSMUSG00000005947.11 ENSMUSG00000005947 ENSMUST00000006101 Itgae protein_coding Interval_114124 chr4 63700063 63700257 + 0 NA Intergenic Intergenic -36781 ENSMUSG00000099294.1 ENSMUSG00000099294 ENSMUST00000184810 Gm11214 protein_coding Interval_173340 chrX 81801806 81802646 + 0 NA Intergenic Intergenic 20504 ENSMUSG00000082319.3 ENSMUSG00000082319 ENSMUST00000118948 Actr3-ps processed_pseudogene Interval_74940 chr17 57610007 57611341 + 0 NA Intergenic Intergenic -52709 ENSMUSG00000117223.1 ENSMUSG00000117223 ENSMUST00000233817 Gm49842 unprocessed_pseudogene Interval_41501 chr12 115365167 115365386 + 0 NA Intergenic Intergenic -5704 ENSMUSG00000094087.1 ENSMUSG00000094087 ENSMUST00000103531 Ighv1-61 IG_V_gene Interval_101107 chr2 178019983 178021547 + 0 NA Intergenic Intergenic -2614 ENSMUSG00000074519.11 ENSMUSG00000074519 ENSMUST00000108926 Zfp971 protein_coding Interval_37373 chr12 65770999 65772024 + 0 NA Intergenic Intergenic -196865 ENSMUSG00000113785.1 ENSMUSG00000113785 ENSMUST00000222655 Gm47975 TEC Interval_88264 chr19 61313167 61313919 + 0 NA Intergenic Intergenic -8263 ENSMUSG00000118197.1 ENSMUSG00000118197 ENSMUST00000237261 Gm20762 processed_pseudogene Interval_162053 chr8 124751075 124752545 + 0 NA promoter-TSS (ENSMUSG00000043068.6) protein_coding-promoter-TSS (ENSMUSG00000043068.6) 22 ENSMUSG00000043068.6 ENSMUSG00000043068 ENSMUST00000055257 Fam89a protein_coding Interval_5740 chr1 91365967 91367205 + 0 NA exon (ENSMUSG00000047443.14, exon 1 of 8) protein_coding-exon (ENSMUSG00000047443.14, exon 1 of 8) -4108 ENSMUSG00000047443.14 ENSMUSG00000047443 ENSMUST00000190998 Erfe protein_coding Interval_44345 chr13 43936344 43937688 + 0 NA Intergenic Intergenic -11863 ENSMUSG00000113671.1 ENSMUSG00000113671 ENSMUST00000222566 Gm2233 lincRNA Interval_167662 chr9 71667451 71667875 + 0 NA intron (ENSMUSG00000032232.14, intron 7 of 17) protein_coding-intron (ENSMUSG00000032232.14, intron 8 of 18) -36554 ENSMUSG00000032232.14 ENSMUSG00000032232 ENSMUST00000146567 Cgnl1 protein_coding Interval_101667 chr3 8751223 8751527 + 0 NA Intergenic Intergenic -4551 ENSMUSG00000103256.1 ENSMUSG00000103256 ENSMUST00000194556 Gm37647 TEC Interval_111152 chr4 13261952 13262148 + 0 NA Intergenic Intergenic 5000 ENSMUSG00000080359.2 ENSMUSG00000080359 ENSMUST00000116709 Gm26250 miRNA Interval_39266 chr12 86328494 86330081 + 0 NA Intergenic Intergenic -18690 ENSMUSG00000113230.1 ENSMUSG00000113230 ENSMUST00000221001 Gm48101 processed_pseudogene Interval_25060 chr11 43570864 43571176 + 0 NA intron (ENSMUSG00000044707.7, intron 3 of 5) protein_coding-intron (ENSMUSG00000044707.7, intron 3 of 5) 10096 ENSMUSG00000085239.1 ENSMUSG00000085239 ENSMUST00000130874 Gm12150 antisense Interval_33840 chr11 118916766 118917133 + 0 NA Intergenic Intergenic -49729 ENSMUSG00000084887.1 ENSMUSG00000084887 ENSMUST00000127327 Gm11749 sense_intronic Interval_141702 chr6 133838273 133839297 + 0 NA Intergenic Intergenic 14888 ENSMUSG00000032758.4 ENSMUSG00000032758 ENSMUST00000203168 Kap protein_coding Interval_159619 chr8 95822157 95822939 + 0 NA TTS (ENSMUSG00000074136.9) antisense-TTS (ENSMUSG00000074136.9) -2798 ENSMUSG00000061104.5 ENSMUSG00000061104 ENSMUST00000074053 Sap18b protein_coding Interval_159772 chr8 102739149 102739373 + 0 NA intron (ENSMUSG00000031673.6, intron 1 of 6) protein_coding-intron (ENSMUSG00000031673.6, intron 1 of 12) -6777 ENSMUSG00000078006.1 ENSMUSG00000078006 ENSMUST00000104813 Gm26301 miRNA Interval_144988 chr7 29293305 29294456 + 0 NA TTS (ENSMUSG00000037166.5) protein_coding-TTS (ENSMUSG00000037166.5) 4572 ENSMUSG00000037166.5 ENSMUSG00000037166 ENSMUST00000048187 Ppp1r14a protein_coding Interval_152244 chr7 130892912 130893132 + 0 NA exon (ENSMUSG00000040268.17, exon 5 of 5) protein_coding-intron (ENSMUSG00000040268.17, intron 5 of 10) 10670 ENSMUSG00000040268.17 ENSMUSG00000040268 ENSMUST00000135359 Plekha1 protein_coding Interval_95270 chr2 105408321 105409378 + 0 NA Intergenic Intergenic -13501 ENSMUSG00000005973.6 ENSMUSG00000005973 ENSMUST00000127019 Rcn1 protein_coding Interval_44159 chr13 41311755 41312153 + 0 NA exon (ENSMUSG00000021365.15, exon 8 of 8) protein_coding-exon (ENSMUSG00000021365.15, exon 8 of 8) -37977 ENSMUSG00000090853.1 ENSMUSG00000090853 ENSMUST00000163881 Gm17364 protein_coding Interval_27192 chr11 63956484 63957732 + 0 NA Intergenic Intergenic -7118 ENSMUSG00000086359.1 ENSMUSG00000086359 ENSMUST00000146915 9630013K17Rik antisense Interval_76549 chr17 80982250 80982916 + 0 NA intron (ENSMUSG00000024245.4, intron 1 of 3) protein_coding-intron (ENSMUSG00000024245.4, intron 1 of 3) 37951 ENSMUSG00000024245.4 ENSMUSG00000024245 ENSMUST00000025092 Tmem178 protein_coding Interval_133 GL456378.1 13764 14287 + 0 NA NA NA NA NA Interval_138371 chr6 87699126 87699651 + 0 NA promoter-TSS (ENSMUSG00000089997.2) protein_coding-promoter-TSS (ENSMUSG00000089997.2) 23413 ENSMUSG00000089997.2 ENSMUSG00000089997 ENSMUST00000238521 1810020O05Rik protein_coding Interval_106128 chr3 93445939 93447946 + 0 NA exon (ENSMUSG00000052415.5, exon 2 of 2) protein_coding-exon (ENSMUSG00000052415.5, exon 2 of 2) 4612 ENSMUSG00000052415.5 ENSMUSG00000052415 ENSMUST00000064257 Tchh protein_coding Interval_107054 chr3 103188165 103189286 + 0 NA Intergenic Intergenic -8282 ENSMUSG00000098153.1 ENSMUSG00000098153 ENSMUST00000182561 Gm27024 processed_pseudogene Interval_111308 chr4 18362043 18362247 + 0 NA Intergenic Intergenic -45204 ENSMUSG00000087402.1 ENSMUSG00000087402 ENSMUST00000133363 Gm11867 processed_transcript Interval_19946 chr10 111440939 111441530 + 0 NA Intergenic Intergenic -31993 ENSMUSG00000058799.16 ENSMUSG00000058799 ENSMUST00000219718 Nap1l1 protein_coding Interval_89022 chr2 14665126 14665551 + 0 NA intron (ENSMUSG00000057914.15, intron 2 of 4) protein_coding-intron (ENSMUSG00000057914.15, intron 2 of 13) -6917 ENSMUSG00000083633.2 ENSMUSG00000083633 ENSMUST00000119631 Gm13312 processed_pseudogene Interval_130622 chr5 129269706 129270833 + 0 NA Intergenic Intergenic -93851 ENSMUSG00000104681.1 ENSMUSG00000104681 ENSMUST00000199076 Gm43001 lincRNA Interval_146607 chr7 47829975 47830573 + 0 NA Intergenic Intergenic -6029 ENSMUSG00000102128.1 ENSMUSG00000102128 ENSMUST00000187440 Gm18349 unprocessed_pseudogene Interval_170697 chr9 110154040 110154297 + 0 NA intron (ENSMUSG00000032481.17, intron 6 of 24) protein_coding-intron (ENSMUSG00000032481.17, intron 6 of 27) -32352 ENSMUSG00000105187.1 ENSMUSG00000105187 ENSMUST00000196828 Gm23377 snoRNA Interval_38061 chr12 75415106 75415755 + 0 NA intron (ENSMUSG00000048982.3, intron 2 of 2) protein_coding-intron (ENSMUSG00000048982.3, intron 2 of 2) 1351 ENSMUSG00000048982.3 ENSMUSG00000048982 ENSMUST00000051079 Gphb5 protein_coding Interval_102213 chr3 19519736 19520944 + 0 NA intron (ENSMUSG00000027606.12, intron 1 of 4) protein_coding-intron (ENSMUSG00000027606.12, intron 1 of 4) -10907 ENSMUSG00000027606.12 ENSMUSG00000027606 ENSMUST00000165693 Dnajc5b protein_coding Interval_137848 chr6 82913245 82914101 + 0 NA TTS (ENSMUSG00000000627.15) protein_coding-TTS (ENSMUSG00000000627.15) -15573 ENSMUSG00000109076.1 ENSMUSG00000109076 ENSMUST00000208233 Gm45145 lincRNA Interval_10146 chr1 166094442 166095260 + 0 NA Intergenic Intergenic 2436 ENSMUSG00000102484.1 ENSMUSG00000102484 ENSMUST00000191624 Gm37923 lincRNA Interval_130025 chr5 123748824 123750182 + 0 NA promoter-TSS (ENSMUSG00000029414.11) protein_coding-promoter-TSS (ENSMUSG00000029414.11) -122 ENSMUSG00000029422.15 ENSMUSG00000029422 ENSMUST00000182542 Rsrc2 protein_coding Interval_93535 chr2 73903491 73903754 + 0 NA Intergenic Intergenic 7669 ENSMUSG00000018770.9 ENSMUSG00000018770 ENSMUST00000155474 Atp5g3 protein_coding Interval_50675 chr14 18033212 18033601 + 0 NA intron (ENSMUSG00000021779.17, intron 9 of 9) protein_coding-intron (ENSMUSG00000021779.17, intron 9 of 9) -11505 ENSMUSG00000114504.1 ENSMUSG00000114504 ENSMUST00000224512 Gm48321 antisense Interval_148413 chr7 81114529 81115339 + 0 NA promoter-TSS (ENSMUSG00000025726.11) protein_coding-promoter-TSS (ENSMUSG00000025726.11) 84 ENSMUSG00000025726.11 ENSMUSG00000025726 ENSMUST00000119083 Slc28a1 protein_coding Interval_118939 chr4 134569135 134569889 + 0 NA intron (ENSMUSG00000037306.13, intron 8 of 8) protein_coding-intron (ENSMUSG00000037306.13, intron 9 of 12) -1661 ENSMUSG00000099289.1 ENSMUSG00000099289 ENSMUST00000185007 Mir6403 miRNA Interval_28965 chr11 79612184 79614361 + 0 NA intron (ENSMUSG00000087434.1, intron 2 of 2) protein_coding-intron (ENSMUSG00000017639.13, intron 1 of 14) 9891 ENSMUSG00000087434.1 ENSMUSG00000087434 ENSMUST00000145652 Rab11fip4os1 antisense Interval_16280 chr10 61914806 61915410 + 0 NA intron (ENSMUSG00000058806.15, intron 3 of 40) protein_coding-intron (ENSMUSG00000058806.15, intron 3 of 33) -44516 ENSMUSG00000112574.1 ENSMUSG00000112574 ENSMUST00000218711 Gm5750 processed_pseudogene Interval_15915 chr10 59265864 59266319 + 0 NA Intergenic Intergenic 44138 ENSMUSG00000098188.1 ENSMUSG00000098188 ENSMUST00000182161 Sowahc protein_coding Interval_55886 chr14 101787129 101787348 + 0 NA intron (ENSMUSG00000033060.16, intron 1 of 30) protein_coding-intron (ENSMUSG00000033060.16, intron 1 of 30) -53269 ENSMUSG00000033060.16 ENSMUSG00000033060 ENSMUST00000160038 Lmo7 protein_coding Interval_54903 chr14 76135170 76135378 + 0 NA exon (ENSMUSG00000022009.1, exon 10 of 10) protein_coding-exon (ENSMUSG00000022009.1, exon 10 of 10) 24383 ENSMUSG00000022009.1 ENSMUSG00000022009 ENSMUST00000022586 Nufip1 protein_coding Interval_87469 chr19 52631548 52632130 + 0 NA Intergenic Intergenic -291403 ENSMUSG00000117896.1 ENSMUSG00000117896 ENSMUST00000237126 AA387883 lincRNA Interval_109736 chr3 146423854 146424742 + 0 NA intron (ENSMUSG00000036825.12, intron 5 of 13) protein_coding-intron (ENSMUSG00000036825.12, intron 5 of 13) 19607 ENSMUSG00000036825.12 ENSMUSG00000036825 ENSMUST00000141103 Ssx2ip protein_coding Interval_68226 chr16 69790441 69791243 + 0 NA Intergenic Intergenic 9539 ENSMUSG00000107073.1 ENSMUSG00000107073 ENSMUST00000201886 4930428D20Rik lincRNA Interval_39675 chr12 92020865 92021156 + 0 NA Intergenic Intergenic 10591 ENSMUSG00000113236.1 ENSMUSG00000113236 ENSMUST00000223522 Gm40548 lincRNA Interval_144772 chr7 28151546 28152182 + 0 NA intron (ENSMUSG00000078776.9, intron 9 of 18) protein_coding-intron (ENSMUSG00000078776.9, intron 10 of 19) 17763 ENSMUSG00000109015.1 ENSMUSG00000109015 ENSMUST00000207600 Gm31024 TEC Interval_170089 chr9 104356258 104356608 + 0 NA Intergenic Intergenic -5399 ENSMUSG00000099599.1 ENSMUSG00000099599 ENSMUST00000191599 Gm28548 lincRNA Interval_56304 chr14 116933011 116934602 + 0 NA intron (ENSMUSG00000058571.11, intron 1 of 9) protein_coding-intron (ENSMUSG00000058571.11, intron 1 of 8) 8275 ENSMUSG00000058571.11 ENSMUSG00000058571 ENSMUST00000078849 Gpc6 protein_coding Interval_113243 chr4 51748754 51749501 + 0 NA Intergenic Intergenic -50793 ENSMUSG00000088954.1 ENSMUSG00000088954 ENSMUST00000158329 Gm24943 ribozyme Interval_26396 chr11 57617346 57618174 + 0 NA Intergenic Intergenic -27705 ENSMUSG00000020520.14 ENSMUSG00000020520 ENSMUST00000108846 Galnt10 protein_coding Interval_143923 chr7 17792782 17792986 + 0 NA exon (ENSMUSG00000063830.5, exon 1 of 1) processed_pseudogene-exon (ENSMUSG00000063830.5, exon 1 of 1) 310 ENSMUSG00000063830.5 ENSMUSG00000063830 ENSMUST00000081336 Gm6065 processed_pseudogene Interval_44985 chr13 51154442 51154628 + 0 NA Intergenic Intergenic -16524 ENSMUSG00000021396.5 ENSMUSG00000021396 ENSMUST00000221339 Nxnl2 protein_coding Interval_153106 chr7 141394923 141395097 + 0 NA intron (ENSMUSG00000025503.5, intron 1 of 2) protein_coding-intron (ENSMUSG00000025503.5, intron 1 of 7) -4418 ENSMUSG00000025503.5 ENSMUSG00000025503 ENSMUST00000125597 Taldo1 protein_coding Interval_126957 chr5 98342619 98344208 + 0 NA intron (ENSMUSG00000057816.7, intron 2 of 2) protein_coding-intron (ENSMUSG00000057816.7, intron 1 of 5) -2981 ENSMUSG00000104545.1 ENSMUSG00000104545 ENSMUST00000198813 E030032P16Rik TEC Interval_74126 chr17 46657821 46658202 + 0 NA TTS (ENSMUSG00000038545.13) protein_coding-TTS (ENSMUSG00000038545.13) 7448 ENSMUSG00000038545.13 ENSMUSG00000038545 ENSMUST00000125949 Cul7 protein_coding Interval_112049 chr4 33525891 33527273 + 0 NA Intergenic Intergenic -73693 ENSMUSG00000081206.1 ENSMUSG00000081206 ENSMUST00000118608 Gm11935 processed_pseudogene Interval_148823 chr7 88719068 88719705 + 0 NA Intergenic Intergenic 63012 ENSMUSG00000109135.1 ENSMUSG00000109135 ENSMUST00000208014 Gm6240 processed_pseudogene Interval_129852 chr5 122750366 122750575 + 0 NA intron (ENSMUSG00000029471.13, intron 6 of 15) protein_coding-intron (ENSMUSG00000029471.13, intron 6 of 16) 28863 ENSMUSG00000029471.13 ENSMUSG00000029471 ENSMUST00000199599 Camkk2 protein_coding Interval_43158 chr13 24764045 24764307 + 0 NA Intergenic Intergenic -2279 ENSMUSG00000006715.11 ENSMUSG00000006715 ENSMUST00000177253 Gmnn protein_coding Interval_136342 chr6 53455403 53455985 + 0 NA intron (ENSMUSG00000053007.9, intron 4 of 5) protein_coding-intron (ENSMUSG00000053007.9, intron 5 of 10) 21720 ENSMUSG00000096147.1 ENSMUSG00000096147 ENSMUST00000083282 Gm25818 snRNA Interval_160288 chr8 107754884 107755534 + 0 NA Intergenic Intergenic -64365 ENSMUSG00000110508.1 ENSMUSG00000110508 ENSMUST00000212585 Gm8940 processed_pseudogene Interval_43719 chr13 35766143 35766347 + 0 NA intron (ENSMUSG00000059288.14, intron 1 of 2) protein_coding-intron (ENSMUSG00000059288.14, intron 3 of 9) 3433 ENSMUSG00000059288.14 ENSMUSG00000059288 ENSMUST00000226071 Cdyl protein_coding Interval_67749 chr16 56852591 56853336 + 0 NA intron (ENSMUSG00000022754.6, intron 1 of 5) protein_coding-intron (ENSMUSG00000022754.6, intron 1 of 5) 14752 ENSMUSG00000022754.6 ENSMUSG00000022754 ENSMUST00000135672 Tmem45a protein_coding Interval_125532 chr5 69294978 69295309 + 0 NA intron (ENSMUSG00000037653.7, intron 1 of 1) protein_coding-intron (ENSMUSG00000037653.7, intron 1 of 1) -17573 ENSMUSG00000107312.1 ENSMUSG00000107312 ENSMUST00000201812 Gm43229 TEC Interval_116469 chr4 113925457 113926780 + 0 NA intron (ENSMUSG00000078598.11, intron 6 of 16) protein_coding-intron (ENSMUSG00000078598.11, intron 6 of 58) 73385 ENSMUSG00000078598.11 ENSMUSG00000078598 ENSMUST00000153413 Skint5 protein_coding Interval_63407 chr15 100879083 100879349 + 0 NA intron (ENSMUSG00000023033.14, intron 1 of 1) protein_coding-intron (ENSMUSG00000023033.14, intron 1 of 26) -46825 ENSMUSG00000115912.1 ENSMUSG00000115912 ENSMUST00000230694 Gm35569 lincRNA Interval_44808 chr13 48802350 48804554 + 0 NA exon (ENSMUSG00000038025.8, exon 22 of 22) protein_coding-exon (ENSMUSG00000038025.8, exon 22 of 22) -39871 ENSMUSG00000113297.1 ENSMUSG00000113297 ENSMUST00000222192 Rpl17-ps6 processed_pseudogene Interval_38467 chr12 79233857 79234233 + 0 NA exon (ENSMUSG00000066440.5, exon 42 of 42) protein_coding-exon (ENSMUSG00000066440.5, exon 42 of 42) 10366 ENSMUSG00000066440.5 ENSMUSG00000066440 ENSMUST00000219571 Zfyve26 protein_coding Interval_172822 chrX 50611787 50612520 + 0 NA intron (ENSMUSG00000085396.7, intron 5 of 19) processed_transcript-intron (ENSMUSG00000085396.7, intron 4 of 6) -47270 ENSMUSG00000085396.7 ENSMUSG00000085396 ENSMUST00000148530 Firre processed_transcript Interval_113634 chr4 57154994 57155430 + 0 NA Intergenic Intergenic -16859 ENSMUSG00000085967.1 ENSMUSG00000085967 ENSMUST00000152074 Gm12530 antisense Interval_71891 chr17 26835726 26836337 + 0 NA Intergenic Intergenic 8978 ENSMUSG00000015579.5 ENSMUSG00000015579 ENSMUST00000235454 Nkx2-5 protein_coding Interval_77811 chr18 3896692 3897889 + 0 NA Intergenic Intergenic 37182 ENSMUSG00000084719.1 ENSMUSG00000084719 ENSMUST00000122770 Gm24632 misc_RNA Interval_152410 chr7 132824769 132825021 + 0 NA intron (ENSMUSG00000030849.18, intron 2 of 6) protein_coding-intron (ENSMUSG00000030849.18, intron 2 of 6) 15328 ENSMUSG00000110159.1 ENSMUSG00000110159 ENSMUST00000211468 Gm45501 TEC Interval_163010 chr9 14500021 14501149 + 0 NA promoter-TSS (ENSMUSG00000004096.9) protein_coding-promoter-TSS (ENSMUSG00000004096.9) -185 ENSMUSG00000053914.9 ENSMUSG00000053914 ENSMUST00000115647 Kdm4d protein_coding Interval_106609 chr3 97718801 97719055 + 0 NA intron (ENSMUSG00000038170.15, intron 27 of 45) protein_coding-intron (ENSMUSG00000038170.15, intron 27 of 46) -11601 ENSMUSG00000105245.1 ENSMUSG00000105245 ENSMUST00000200435 Gm31305 antisense Interval_147111 chr7 63319709 63320068 + 0 NA Intergenic Intergenic -107319 ENSMUSG00000030525.8 ENSMUSG00000030525 ENSMUST00000208304 Chrna7 protein_coding Interval_24475 chr11 33536779 33538269 + 0 NA Intergenic Intergenic 41435 ENSMUSG00000020159.8 ENSMUSG00000020159 ENSMUST00000135350 Gabrp protein_coding Interval_47773 chr13 92541152 92541523 + 0 NA Intergenic Intergenic -24263 ENSMUSG00000021706.14 ENSMUSG00000021706 ENSMUST00000154850 Zfyve16 protein_coding Interval_117574 chr4 124759279 124760232 + 0 NA intron (ENSMUSG00000028894.18, intron 7 of 24) protein_coding-intron (ENSMUSG00000028894.18, intron 7 of 23) -8401 ENSMUSG00000086589.1 ENSMUSG00000086589 ENSMUST00000131381 Gm12915 processed_transcript Interval_1777 chr1 33727414 33727731 + 0 NA TTS (ENSMUSG00000004768.14) protein_coding-TTS (ENSMUSG00000004768.14) 7685 ENSMUSG00000004768.14 ENSMUSG00000004768 ENSMUST00000132066 Rab23 protein_coding Interval_11904 chr1 186954523 186954893 + 0 NA Intergenic Intergenic -5800 ENSMUSG00000097935.1 ENSMUSG00000097935 ENSMUST00000180973 Gm3809 processed_pseudogene Interval_115302 chr4 95584922 95585718 + 0 NA promoter-TSS (ENSMUSG00000028573.18) protein_coding-promoter-TSS (ENSMUSG00000028573.18) -23161 ENSMUSG00000093492.1 ENSMUSG00000093492 ENSMUST00000177219 Gm20651 processed_pseudogene Interval_67534 chr16 50415353 50415898 + 0 NA intron (ENSMUSG00000022641.15, intron 2 of 16) protein_coding-intron (ENSMUSG00000022641.15, intron 2 of 15) 16684 ENSMUSG00000022641.15 ENSMUSG00000022641 ENSMUST00000130210 Bbx protein_coding Interval_85312 chr19 24571494 24572114 + 0 NA Intergenic Intergenic 15452 ENSMUSG00000117979.1 ENSMUSG00000117979 ENSMUST00000235982 Gm50341 lincRNA Interval_670 chr1 9755122 9755465 + 0 NA intron (ENSMUSG00000097893.8, intron 3 of 4) antisense-intron (ENSMUSG00000097893.8, intron 2 of 6) 6667 ENSMUSG00000097893.8 ENSMUSG00000097893 ENSMUST00000189322 1700034P13Rik antisense Interval_3719 chr1 61770838 61771531 + 0 NA intron (ENSMUSG00000085842.7, intron 4 of 4) protein_coding-intron (ENSMUSG00000052062.14, intron 2 of 21) -34037 ENSMUSG00000103002.1 ENSMUSG00000103002 ENSMUST00000191979 Gm38075 TEC Interval_54364 chr14 67939779 67940316 + 0 NA Intergenic Intergenic -80302 ENSMUSG00000098866.1 ENSMUSG00000098866 ENSMUST00000183732 Mir6539 miRNA Interval_6840 chr1 120013107 120013519 + 0 NA intron (ENSMUSG00000026387.15, intron 1 of 12) protein_coding-intron (ENSMUSG00000026387.15, intron 1 of 13) 6279 ENSMUSG00000026387.15 ENSMUSG00000026387 ENSMUST00000189037 Sctr protein_coding Interval_159998 chr8 105660420 105661829 + 0 NA promoter-TSS (ENSMUSG00000080021.5) processed_pseudogene-promoter-TSS (ENSMUSG00000080021.5) -337 ENSMUSG00000080021.5 ENSMUSG00000080021 ENSMUST00000116136 Gm5915 processed_pseudogene Interval_24077 chr11 30025693 30026529 + 0 NA promoter-TSS (ENSMUSG00000044072.14) protein_coding-promoter-TSS (ENSMUSG00000044072.14) 43697 ENSMUSG00000080906.1 ENSMUSG00000080906 ENSMUST00000121962 Gm12095 processed_pseudogene Interval_73422 chr17 37125074 37125893 + 0 NA Intergenic Intergenic -5395 ENSMUSG00000096477.2 ENSMUSG00000096477 ENSMUST00000168659 Olfr92 protein_coding Interval_83180 chr18 82583533 82585045 + 0 NA TTS (ENSMUSG00000041607.17) protein_coding-TTS (ENSMUSG00000041607.17) 29743 ENSMUSG00000041607.17 ENSMUSG00000041607 ENSMUST00000150952 Mbp protein_coding Interval_144539 chr7 25780982 25782326 + 0 NA intron (ENSMUSG00000002602.16, intron 2 of 2) protein_coding-intron (ENSMUSG00000002602.16, intron 4 of 19) 5412 ENSMUSG00000002602.16 ENSMUSG00000002602 ENSMUST00000137383 Axl protein_coding Interval_58982 chr15 41311397 41312182 + 0 NA Intergenic Intergenic -68631 ENSMUSG00000116178.1 ENSMUSG00000116178 ENSMUST00000229823 Gm49529 processed_pseudogene Interval_127790 chr5 107858935 107859156 + 0 NA intron (ENSMUSG00000011831.16, intron 2 of 2) protein_coding-intron (ENSMUSG00000011831.16, intron 1 of 17) 9343 ENSMUSG00000011831.16 ENSMUSG00000011831 ENSMUST00000132406 Evi5 protein_coding Interval_14953 chr10 41432599 41433035 + 0 NA intron (ENSMUSG00000091415.5, intron 39 of 39) protein_coding-intron (ENSMUSG00000091415.5, intron 39 of 39) -17618 ENSMUSG00000019826.11 ENSMUSG00000019826 ENSMUST00000215881 Zbtb24 protein_coding Interval_36857 chr12 54743872 54745601 + 0 NA Intergenic Intergenic -6114 ENSMUSG00000096206.1 ENSMUSG00000096206 ENSMUST00000178469 Gm22317 snRNA Interval_24970 chr11 42255571 42255904 + 0 NA Intergenic Intergenic 65314 ENSMUSG00000020428.13 ENSMUSG00000020428 ENSMUST00000109286 Gabra6 protein_coding Interval_35502 chr12 23248144 23248915 + 0 NA intron (ENSMUSG00000092465.2, intron 3 of 5) unprocessed_pseudogene-intron (ENSMUSG00000092465.2, intron 3 of 5) 48749 ENSMUSG00000096441.1 ENSMUSG00000096441 ENSMUST00000103807 Gm26140 miRNA Interval_82731 chr18 76256616 76257534 + 0 NA intron (ENSMUSG00000024563.16, intron 1 of 5) protein_coding-intron (ENSMUSG00000024563.16, intron 1 of 9) 14901 ENSMUSG00000024563.16 ENSMUSG00000024563 ENSMUST00000113930 Smad2 protein_coding Interval_173086 chrX 71220673 71221363 + 0 NA intron (ENSMUSG00000031337.16, intron 1 of 4) protein_coding-intron (ENSMUSG00000031337.16, intron 1 of 13) 10251 ENSMUSG00000031337.16 ENSMUSG00000031337 ENSMUST00000129722 Mtm1 protein_coding Interval_64144 chr16 8706495 8707432 + 0 NA promoter-TSS (ENSMUSG00000022710.17) protein_coding-promoter-TSS (ENSMUSG00000022710.17) -8431 ENSMUSG00000022710.17 ENSMUSG00000022710 ENSMUST00000159509 Usp7 protein_coding Interval_31783 chr11 102826564 102828192 + 0 NA Intergenic Intergenic -2500 ENSMUSG00000064788.1 ENSMUSG00000064788 ENSMUST00000082854 Gm22683 snoRNA Interval_22324 chr11 8795962 8796376 + 0 NA Intergenic Intergenic 10679 ENSMUSG00000081539.1 ENSMUSG00000081539 ENSMUST00000121505 Gm11990 processed_pseudogene Interval_13232 chr10 13329569 13330132 + 0 NA intron (ENSMUSG00000062866.16, intron 1 of 12) protein_coding-intron (ENSMUSG00000062866.16, intron 1 of 12) 58881 ENSMUSG00000062866.16 ENSMUSG00000062866 ENSMUST00000154265 Phactr2 protein_coding Interval_64467 chr16 11696900 11698190 + 0 NA intron (ENSMUSG00000071669.14, intron 18 of 20) protein_coding-intron (ENSMUSG00000071669.14, intron 11 of 13) -5688 ENSMUSG00000085732.1 ENSMUSG00000085732 ENSMUST00000154314 Gm4279 antisense Interval_137144 chr6 68102462 68102712 + 0 NA TTS (ENSMUSG00000106331.1) processed_pseudogene-TTS (ENSMUSG00000106331.1) 879 ENSMUSG00000106331.1 ENSMUSG00000106331 ENSMUST00000197416 Gm5309 processed_pseudogene Interval_36837 chr12 54553195 54553453 + 0 NA Intergenic Intergenic -36245 ENSMUSG00000113947.1 ENSMUSG00000113947 ENSMUST00000223133 Gm10465 lincRNA Interval_109735 chr3 146415508 146416357 + 0 NA intron (ENSMUSG00000036825.12, intron 2 of 3) protein_coding-intron (ENSMUSG00000036825.12, intron 1 of 13) 11241 ENSMUSG00000036825.12 ENSMUSG00000036825 ENSMUST00000141103 Ssx2ip protein_coding Interval_44730 chr13 47943848 47944585 + 0 NA Intergenic Intergenic 33781 ENSMUSG00000114959.1 ENSMUSG00000114959 ENSMUST00000223677 G630093K05Rik lincRNA Interval_72147 chr17 28274677 28275017 + 0 NA intron (ENSMUSG00000002250.16, intron 1 of 5) protein_coding-intron (ENSMUSG00000002250.16, intron 2 of 7) -38730 ENSMUSG00000007570.16 ENSMUSG00000007570 ENSMUST00000156569 Fance protein_coding Interval_102396 chr3 23509692 23509972 + 0 NA intron (ENSMUSG00000102203.1, intron 2 of 2) lincRNA-intron (ENSMUSG00000102203.1, intron 2 of 2) 48782 ENSMUSG00000102203.1 ENSMUSG00000102203 ENSMUST00000194267 4930412E21Rik lincRNA Interval_129725 chr5 121981577 121982523 + 0 NA intron (ENSMUSG00000042589.18, intron 1 of 6) protein_coding-intron (ENSMUSG00000042589.18, intron 2 of 22) -43280 ENSMUSG00000105795.1 ENSMUSG00000105795 ENSMUST00000198001 Gm3970 antisense Interval_156831 chr8 60919319 60920009 + 0 NA intron (ENSMUSG00000004319.15, intron 1 of 3) protein_coding-intron (ENSMUSG00000004319.15, intron 11 of 13) 13633 ENSMUSG00000038005.15 ENSMUSG00000038005 ENSMUST00000211016 Hpf1 protein_coding Interval_170489 chr9 108287625 108288443 + 0 NA Intergenic Intergenic -2421 ENSMUSG00000032606.7 ENSMUSG00000032606 ENSMUST00000192035 Nicn1 protein_coding Interval_77186 chr17 87202574 87202829 + 0 NA Intergenic Intergenic -7759 ENSMUSG00000117384.1 ENSMUSG00000117384 ENSMUST00000234580 C330024C12Rik lincRNA Interval_58997 chr15 41515519 41515877 + 0 NA intron (ENSMUSG00000022307.16, intron 1 of 15) protein_coding-intron (ENSMUSG00000022307.16, intron 1 of 15) -272540 ENSMUSG00000116178.1 ENSMUSG00000116178 ENSMUST00000229823 Gm49529 processed_pseudogene Interval_86790 chr19 43902759 43903159 + 0 NA exon (ENSMUSG00000025195.9, exon 3 of 15) protein_coding-exon (ENSMUSG00000025195.9, exon 3 of 15) -17514 ENSMUSG00000118000.1 ENSMUSG00000118000 ENSMUST00000235838 Gm50217 lincRNA Interval_100464 chr2 169168087 169170329 + 0 NA Intergenic Intergenic 62755 ENSMUSG00000086238.1 ENSMUSG00000086238 ENSMUST00000144607 Gm14258 lincRNA Interval_40339 chr12 103984559 103985204 + 0 NA TTS (ENSMUSG00000093753.1) processed_transcript-TTS (ENSMUSG00000093753.1) 5038 ENSMUSG00000063232.16 ENSMUSG00000063232 ENSMUST00000139777 Serpina11 protein_coding Interval_160286 chr8 107719777 107720329 + 0 NA Intergenic Intergenic -29209 ENSMUSG00000110508.1 ENSMUSG00000110508 ENSMUST00000212585 Gm8940 processed_pseudogene Interval_65069 chr16 18836225 18837324 + 0 NA exon (ENSMUSG00000071632.10, exon 2 of 3) protein_coding-exon (ENSMUSG00000071632.10, exon 2 of 3) 190 ENSMUSG00000099908.1 ENSMUSG00000099908 ENSMUST00000190050 Gm28539 protein_coding Interval_65653 chr16 24834981 24835758 + 0 NA intron (ENSMUSG00000033306.15, intron 3 of 7) protein_coding-intron (ENSMUSG00000033306.15, intron 8 of 12) 7514 ENSMUSG00000065494.1 ENSMUSG00000065494 ENSMUST00000083560 Mir28a miRNA Interval_154228 chr8 13596402 13596621 + 0 NA intron (ENSMUSG00000031453.16, intron 6 of 6) protein_coding-intron (ENSMUSG00000031453.16, intron 5 of 23) -34050 ENSMUSG00000031452.15 ENSMUSG00000031452 ENSMUST00000132787 1700029H14Rik protein_coding Interval_159771 chr8 102365497 102365879 + 0 NA Intergenic Intergenic -158206 ENSMUSG00000088596.1 ENSMUSG00000088596 ENSMUST00000157971 Gm24602 snRNA Interval_33292 chr11 115738463 115738833 + 0 NA Intergenic Intergenic 9182 ENSMUSG00000084130.1 ENSMUSG00000084130 ENSMUST00000120031 Gm11704 processed_pseudogene Interval_21460 chr10 128737265 128738049 + 0 NA intron (ENSMUSG00000025357.8, intron 2 of 23) protein_coding-intron (ENSMUSG00000025357.8, intron 1 of 23) 7198 ENSMUSG00000025357.8 ENSMUSG00000025357 ENSMUST00000217957 Dgka protein_coding Interval_71352 chr17 22564624 22565007 + 0 NA intron (ENSMUSG00000095093.2, intron 4 of 5) protein_coding-intron (ENSMUSG00000095093.2, intron 4 of 5) 8667 ENSMUSG00000095093.2 ENSMUSG00000095093 ENSMUST00000234027 Vmn2r111 protein_coding Interval_109336 chr3 139074182 139076199 + 0 NA promoter-TSS (ENSMUSG00000028149.12) protein_coding-promoter-TSS (ENSMUSG00000028149.12) -42 ENSMUSG00000028149.12 ENSMUSG00000028149 ENSMUST00000195953 Rap1gds1 protein_coding Interval_103934 chr3 55117144 55117880 + 0 NA TTS (ENSMUSG00000036580.15) protein_coding-TTS (ENSMUSG00000036580.15) 5374 ENSMUSG00000036580.15 ENSMUSG00000036580 ENSMUST00000146109 Spg20 protein_coding Interval_21059 chr10 125701236 125701909 + 0 NA Intergenic Intergenic 189041 ENSMUSG00000112100.1 ENSMUSG00000112100 ENSMUST00000219250 Gm9102 processed_pseudogene Interval_142677 chr6 144970693 144971655 + 0 NA Intergenic Intergenic 67014 ENSMUSG00000088867.1 ENSMUSG00000088867 ENSMUST00000158242 Gm23071 rRNA Interval_42221 chr13 10112343 10112559 + 0 NA intron (ENSMUSG00000046159.16, intron 3 of 4) protein_coding-intron (ENSMUSG00000046159.16, intron 3 of 4) -41585 ENSMUSG00000113680.1 ENSMUSG00000113680 ENSMUST00000221804 Gm47405 sense_intronic Interval_126676 chr5 91991074 91991443 + 0 NA TTS (ENSMUSG00000096035.2) protein_coding-TTS (ENSMUSG00000096035.2) 3783 ENSMUSG00000096035.2 ENSMUSG00000096035 ENSMUST00000178614 Odaph protein_coding Interval_103967 chr3 55611699 55612827 + 0 NA Intergenic Intergenic -29533 ENSMUSG00000106334.1 ENSMUSG00000106334 ENSMUST00000198856 Gm43549 lincRNA Interval_78744 chr18 20080969 20082425 + 0 NA Intergenic Intergenic 33174 ENSMUSG00000044322.7 ENSMUSG00000044322 ENSMUST00000226115 Dsc1 protein_coding Interval_133416 chr6 4902660 4904268 + 0 NA promoter-TSS (ENSMUSG00000032827.15) protein_coding-promoter-TSS (ENSMUSG00000032827.15) -1952 ENSMUSG00000032827.15 ENSMUSG00000032827 ENSMUST00000065842 Ppp1r9a protein_coding Interval_95572 chr2 112401493 112401971 + 0 NA intron (ENSMUSG00000027132.3, intron 1 of 3) protein_coding-intron (ENSMUSG00000027132.3, intron 1 of 9) -12235 ENSMUSG00000081541.1 ENSMUSG00000081541 ENSMUST00000121023 Gm13940 processed_pseudogene Interval_58178 chr15 30373312 30373567 + 0 NA intron (ENSMUSG00000022240.10, intron 2 of 2) protein_coding-intron (ENSMUSG00000022240.10, intron 2 of 22) -55405 ENSMUSG00000115073.1 ENSMUSG00000115073 ENSMUST00000226263 Gm49283 TEC Interval_75727 chr17 70899438 70899877 + 0 NA intron (ENSMUSG00000097154.2, intron 1 of 2) lincRNA-intron (ENSMUSG00000097154.2, intron 1 of 2) -6748 ENSMUSG00000117121.1 ENSMUSG00000117121 ENSMUST00000233300 Gm49902 TEC Interval_41649 chr12 117361358 117361681 + 0 NA Intergenic Intergenic -24507 ENSMUSG00000101930.1 ENSMUSG00000101930 ENSMUST00000186454 Gm5441 antisense Interval_125577 chr5 72155414 72156415 + 0 NA TTS (ENSMUSG00000029213.11) protein_coding-TTS (ENSMUSG00000029213.11) 12250 ENSMUSG00000029213.11 ENSMUSG00000029213 ENSMUST00000196241 Commd8 protein_coding Interval_145840 chr7 40061585 40061923 + 0 NA Intergenic Intergenic 18927 ENSMUSG00000102464.2 ENSMUSG00000102464 ENSMUST00000192013 Gm38199 TEC Interval_64042 chr16 6064182 6064674 + 0 NA intron (ENSMUSG00000008658.16, intron 1 of 11) protein_coding-intron (ENSMUSG00000008658.16, intron 1 of 11) 88843 ENSMUSG00000101481.1 ENSMUSG00000101481 ENSMUST00000190515 1700123O21Rik sense_intronic Interval_49813 chr13 116304838 116305266 + 0 NA intron (ENSMUSG00000042258.13, intron 2 of 2) protein_coding-intron (ENSMUSG00000042258.13, intron 3 of 5) 4633 ENSMUSG00000042258.13 ENSMUSG00000042258 ENSMUST00000177469 Isl1 protein_coding Interval_19134 chr10 94958467 94958758 + 0 NA Intergenic Intergenic 10022 ENSMUSG00000089146.1 ENSMUSG00000089146 ENSMUST00000158521 Gm25266 misc_RNA Interval_48331 chr13 98250841 98251564 + 0 NA intron (ENSMUSG00000041747.3, intron 10 of 12) protein_coding-intron (ENSMUSG00000041747.3, intron 10 of 12) 2955 ENSMUSG00000041747.3 ENSMUSG00000041747 ENSMUST00000224842 Utp15 protein_coding Interval_30815 chr11 96666665 96667445 + 0 NA intron (ENSMUSG00000057058.16, intron 4 of 7) protein_coding-intron (ENSMUSG00000057058.16, intron 4 of 11) -99747 ENSMUSG00000085242.1 ENSMUSG00000085242 ENSMUST00000124865 Gm11537 antisense Interval_28698 chr11 77815719 77816408 + 0 NA TTS (ENSMUSG00000000631.20) protein_coding-TTS (ENSMUSG00000000631.20) 14713 ENSMUSG00000000631.20 ENSMUSG00000000631 ENSMUST00000142571 Myo18a protein_coding Interval_6830 chr1 119936276 119937546 + 0 NA intron (ENSMUSG00000036962.12, intron 16 of 23) protein_coding-intron (ENSMUSG00000036962.12, intron 15 of 22) -23703 ENSMUSG00000036975.5 ENSMUSG00000036975 ENSMUST00000037906 Tmem177 protein_coding Interval_36972 chr12 55806229 55807188 + 0 NA intron (ENSMUSG00000021027.17, intron 1 of 39) protein_coding-intron (ENSMUSG00000021027.17, intron 1 of 40) 9819 ENSMUSG00000112393.1 ENSMUSG00000112393 ENSMUST00000217762 Gm48655 TEC Interval_118297 chr4 130130823 130131156 + 0 NA exon (ENSMUSG00000028778.15, exon 9 of 9) protein_coding-exon (ENSMUSG00000028778.15, exon 9 of 9) 6639 ENSMUSG00000028778.15 ENSMUSG00000028778 ENSMUST00000164887 Hcrtr1 protein_coding Interval_40324 chr12 103639774 103640390 + 0 NA Intergenic Intergenic 1987 ENSMUSG00000101916.1 ENSMUSG00000101916 ENSMUST00000185363 Gm18501 processed_pseudogene Interval_170478 chr9 108227871 108228521 + 0 NA intron (ENSMUSG00000039952.15, intron 1 of 2) protein_coding-intron (ENSMUSG00000039952.15, intron 2 of 3) 35555 ENSMUSG00000039952.15 ENSMUSG00000039952 ENSMUST00000193701 Dag1 protein_coding Interval_68377 chr16 75098434 75098612 + 0 NA Intergenic Intergenic -48710 ENSMUSG00000116698.1 ENSMUSG00000116698 ENSMUST00000232159 Gm49676 processed_pseudogene Interval_114031 chr4 62628760 62629139 + 0 NA intron (ENSMUSG00000085177.1, intron 1 of 1) protein_coding-intron (ENSMUSG00000059810.18, intron 14 of 19) 4763 ENSMUSG00000085177.1 ENSMUSG00000085177 ENSMUST00000130206 Gm11209 antisense Interval_101378 chr2 180905572 180906367 + 0 NA intron (ENSMUSG00000038848.14, intron 5 of 5) protein_coding-intron (ENSMUSG00000038848.14, intron 4 of 4) 11864 ENSMUSG00000098051.1 ENSMUSG00000098051 ENSMUST00000183124 Gm27032 lincRNA Interval_167439 chr9 69367813 69368731 + 0 NA intron (ENSMUSG00000032238.17, intron 4 of 9) protein_coding-intron (ENSMUSG00000032238.17, intron 5 of 10) -4025 ENSMUSG00000086648.1 ENSMUSG00000086648 ENSMUST00000152570 Gm15511 antisense Interval_28976 chr11 79675934 79676181 + 0 NA promoter-TSS (ENSMUSG00000086569.1) antisense-promoter-TSS (ENSMUSG00000086569.1) -974 ENSMUSG00000086569.1 ENSMUSG00000086569 ENSMUST00000123067 Rab11fip4os2 antisense Interval_96406 chr2 122243387 122244880 + 0 NA intron (ENSMUSG00000027227.7, intron 1 of 8) protein_coding-intron (ENSMUSG00000027227.7, intron 1 of 8) 9384 ENSMUSG00000027227.7 ENSMUSG00000027227 ENSMUST00000110551 Sord protein_coding Interval_133253 chr5 150882754 150884061 + 0 NA promoter-TSS (ENSMUSG00000107047.1) lincRNA-promoter-TSS (ENSMUSG00000107047.1) -765 ENSMUSG00000107047.1 ENSMUSG00000107047 ENSMUST00000200887 Gm43298 lincRNA Interval_125494 chr5 67640456 67640730 + 0 NA intron (ENSMUSG00000037685.15, intron 30 of 33) protein_coding-intron (ENSMUSG00000037685.15, intron 33 of 36) -1808 ENSMUSG00000085363.1 ENSMUSG00000085363 ENSMUST00000145914 Gm15478 antisense Interval_37620 chr12 70447842 70448132 + 0 NA Intergenic Intergenic -8051 ENSMUSG00000021072.12 ENSMUSG00000021072 ENSMUST00000160865 Tmx1 protein_coding Interval_25951 chr11 53068598 53069156 + 0 NA intron (ENSMUSG00000036264.9, intron 5 of 15) protein_coding-intron (ENSMUSG00000036264.9, intron 5 of 15) 51179 ENSMUSG00000087668.1 ENSMUSG00000087668 ENSMUST00000137096 Gm11186 antisense Interval_10309 chr1 168392204 168392622 + 0 NA intron (ENSMUSG00000052534.15, intron 2 of 7) protein_coding-intron (ENSMUSG00000052534.15, intron 2 of 6) 39857 ENSMUSG00000052534.15 ENSMUSG00000052534 ENSMUST00000176791 Pbx1 protein_coding Interval_52362 chr14 45419398 45419601 + 0 NA exon (ENSMUSG00000053205.9, exon 12 of 13) protein_coding-exon (ENSMUSG00000053205.9, exon 12 of 13) -14539 ENSMUSG00000096383.1 ENSMUSG00000096383 ENSMUST00000179366 Gm25353 miRNA Interval_100965 chr2 173682789 173683039 + 0 NA intron (ENSMUSG00000027519.10, intron 2 of 5) protein_coding-intron (ENSMUSG00000027519.10, intron 2 of 6) 18234 ENSMUSG00000098588.1 ENSMUSG00000098588 ENSMUST00000183857 Mir6340 miRNA Interval_111428 chr4 21569444 21569925 + 0 NA Intergenic Intergenic -56696 ENSMUSG00000083654.1 ENSMUSG00000083654 ENSMUST00000118187 Gm11875 processed_pseudogene Interval_153499 chr7 145231053 145232431 + 0 NA intron (ENSMUSG00000048677.9, intron 24 of 24) protein_coding-intron (ENSMUSG00000048677.9, intron 19 of 20) -23662 ENSMUSG00000109305.1 ENSMUSG00000109305 ENSMUST00000207841 Smim38 protein_coding Interval_73674 chr17 42670965 42671543 + 0 NA intron (ENSMUSG00000023918.12, intron 4 of 9) protein_coding-intron (ENSMUSG00000023918.12, intron 4 of 9) 21008 ENSMUSG00000023918.12 ENSMUSG00000023918 ENSMUST00000164524 Adgrf4 protein_coding Interval_109512 chr3 143303825 143304271 + 0 NA Intergenic Intergenic -26372 ENSMUSG00000106162.1 ENSMUSG00000106162 ENSMUST00000199409 Gm43613 lincRNA Interval_100322 chr2 168393128 168394765 + 0 NA Intergenic Intergenic 24628 ENSMUSG00000082239.1 ENSMUSG00000082239 ENSMUST00000119539 Gm14234 processed_pseudogene Interval_162987 chr9 14207377 14207852 + 0 NA intron (ENSMUSG00000111803.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000111803.1, intron 1 of 1) 3531 ENSMUSG00000111803.1 ENSMUSG00000111803 ENSMUST00000216569 Gm47564 lincRNA Interval_82732 chr18 76265489 76266464 + 0 NA intron (ENSMUSG00000024563.16, intron 1 of 4) protein_coding-intron (ENSMUSG00000024563.16, intron 2 of 10) 23802 ENSMUSG00000024563.16 ENSMUSG00000024563 ENSMUST00000113930 Smad2 protein_coding Interval_15575 chr10 51669303 51669564 + 0 NA intron (ENSMUSG00000112878.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000112878.1, intron 1 of 1) 2444 ENSMUSG00000112878.1 ENSMUSG00000112878 ENSMUST00000219017 1700042O05Rik lincRNA Interval_111196 chr4 14632427 14633948 + 0 NA intron (ENSMUSG00000023151.9, intron 8 of 8) protein_coding-intron (ENSMUSG00000023151.9, intron 8 of 8) -11690 ENSMUSG00000040569.13 ENSMUSG00000040569 ENSMUST00000143105 Slc26a7 protein_coding Interval_79550 chr18 33586110 33586338 + 0 NA Intergenic Intergenic 9756 ENSMUSG00000117689.1 ENSMUSG00000117689 ENSMUST00000237469 Gm50392 processed_pseudogene Interval_99006 chr2 156602000 156604182 + 0 NA Intergenic Intergenic 10331 ENSMUSG00000086118.1 ENSMUSG00000086118 ENSMUST00000124676 Gm14169 processed_transcript Interval_27800 chr11 70067306 70067581 + 0 NA Intergenic Intergenic 13358 ENSMUSG00000020884.15 ENSMUSG00000020884 ENSMUST00000123369 Asgr1 protein_coding Interval_16871 chr10 69372466 69372755 + 0 NA TTS (ENSMUSG00000112509.1) processed_pseudogene-TTS (ENSMUSG00000112509.1) 702 ENSMUSG00000112509.1 ENSMUSG00000112509 ENSMUST00000219632 Gm47211 processed_pseudogene Interval_114369 chr4 74367525 74368349 + 0 NA intron (ENSMUSG00000028397.13, intron 17 of 21) protein_coding-intron (ENSMUSG00000028397.13, intron 17 of 21) 105128 ENSMUSG00000028397.13 ENSMUSG00000028397 ENSMUST00000150439 Kdm4c protein_coding Interval_6525 chr1 114419713 114420069 + 0 NA Intergenic Intergenic -455757 ENSMUSG00000097648.1 ENSMUSG00000097648 ENSMUST00000180837 9330185C12Rik lincRNA Interval_66502 chr16 34399684 34400883 + 0 NA intron (ENSMUSG00000061751.16, intron 1 of 36) protein_coding-intron (ENSMUSG00000061751.16, intron 1 of 59) -266034 ENSMUSG00000022832.11 ENSMUSG00000022832 ENSMUST00000231612 Ropn1 protein_coding Interval_119464 chr4 137752288 137752566 + 0 NA TTS (ENSMUSG00000028766.10) protein_coding-TTS (ENSMUSG00000028766.10) 29764 ENSMUSG00000028766.10 ENSMUSG00000028766 ENSMUST00000143757 Alpl protein_coding Interval_139615 chr6 103236983 103237521 + 0 NA Intergenic Intergenic 42734 ENSMUSG00000108296.1 ENSMUSG00000108296 ENSMUST00000203805 Gm44295 processed_pseudogene Interval_70701 chr17 13673951 13674286 + 0 NA intron (ENSMUSG00000117063.1, intron 1 of 4) lincRNA-intron (ENSMUSG00000117063.1, intron 1 of 4) -1258 ENSMUSG00000077349.1 ENSMUSG00000077349 ENSMUST00000104161 Gm24867 snRNA Interval_121884 chr5 9142302 9143905 + 0 NA intron (ENSMUSG00000042508.16, intron 3 of 16) protein_coding-intron (ENSMUSG00000042508.16, intron 4 of 17) -12630 ENSMUSG00000079659.5 ENSMUSG00000079659 ENSMUST00000200542 Tmem243 protein_coding Interval_150488 chr7 111128577 111128837 + 0 NA Intergenic Intergenic -6023 ENSMUSG00000110424.1 ENSMUSG00000110424 ENSMUST00000210340 1700012D14Rik processed_transcript Interval_40170 chr12 102255487 102255755 + 0 NA intron (ENSMUSG00000041771.14, intron 13 of 16) protein_coding-intron (ENSMUSG00000041771.14, intron 13 of 16) -1934 ENSMUSG00000064776.2 ENSMUSG00000064776 ENSMUST00000082842 Gm25203 snoRNA Interval_25311 chr11 46245364 46247306 + 0 NA intron (ENSMUSG00000020340.16, intron 21 of 30) protein_coding-intron (ENSMUSG00000020340.16, intron 21 of 30) -2141 ENSMUSG00000081078.1 ENSMUSG00000081078 ENSMUST00000117362 Gm12568 processed_pseudogene Interval_89532 chr2 21958470 21958774 + 0 NA Intergenic Intergenic -109204 ENSMUSG00000081467.1 ENSMUSG00000081467 ENSMUST00000119183 Gm13337 processed_pseudogene Interval_84651 chr19 14666492 14667072 + 0 NA Intergenic Intergenic 8115 ENSMUSG00000103488.1 ENSMUSG00000103488 ENSMUST00000193515 Gm37997 TEC Interval_92727 chr2 64396178 64396431 + 0 NA Intergenic Intergenic -2444 ENSMUSG00000087702.1 ENSMUSG00000087702 ENSMUST00000142353 Gm13575 lincRNA Interval_20085 chr10 113843972 113844221 + 0 NA Intergenic Intergenic 112347 ENSMUSG00000112181.1 ENSMUSG00000112181 ENSMUST00000220147 Gm47538 processed_pseudogene Interval_3498 chr1 59009219 59009424 + 0 NA intron (ENSMUSG00000072295.7, intron 17 of 18) protein_coding-intron (ENSMUSG00000072295.7, intron 17 of 17) -5782 ENSMUSG00000047383.8 ENSMUSG00000047383 ENSMUST00000054653 AC169382.1 lincRNA Interval_78119 chr18 8514872 8515141 + 0 NA Intergenic Intergenic 99877 ENSMUSG00000117484.1 ENSMUSG00000117484 ENSMUST00000234117 Gm5500 processed_pseudogene Interval_20376 chr10 117173641 117174975 + 0 NA Intergenic Intergenic -3324 ENSMUSG00000112753.1 ENSMUSG00000112753 ENSMUST00000219785 4930423D24Rik lincRNA Interval_128904 chr5 115978988 115979939 + 0 NA exon (ENSMUSG00000029516.19, exon 28 of 47) protein_coding-exon (ENSMUSG00000029516.19, exon 28 of 47) -29853 ENSMUSG00000085376.1 ENSMUSG00000085376 ENSMUST00000127049 Gm14508 antisense Interval_31394 chr11 100413834 100415808 + 0 NA promoter-TSS (ENSMUSG00000001555.10) protein_coding-promoter-TSS (ENSMUSG00000001555.10) -2947 ENSMUSG00000006931.15 ENSMUSG00000006931 ENSMUST00000141840 P3h4 protein_coding Interval_61280 chr15 80505273 80505857 + 0 NA intron (ENSMUSG00000050439.7, intron 5 of 6) protein_coding-intron (ENSMUSG00000050439.7, intron 4 of 5) 29673 ENSMUSG00000116345.1 ENSMUSG00000116345 ENSMUST00000230279 Gm19141 processed_pseudogene Interval_172046 chr9 123930106 123930892 + 0 NA Intergenic Intergenic 38193 ENSMUSG00000025804.5 ENSMUSG00000025804 ENSMUST00000026911 Ccr1 protein_coding Interval_83179 chr18 82578616 82578888 + 0 NA intron (ENSMUSG00000041607.17, intron 5 of 5) protein_coding-intron (ENSMUSG00000041607.17, intron 6 of 6) 24206 ENSMUSG00000041607.17 ENSMUSG00000041607 ENSMUST00000150952 Mbp protein_coding Interval_93270 chr2 71598474 71599492 + 0 NA Intergenic Intergenic -53033 ENSMUSG00000023391.8 ENSMUSG00000023391 ENSMUST00000134249 Dlx2 protein_coding Interval_157252 chr8 68533061 68534041 + 0 NA intron (ENSMUSG00000036356.15, intron 1 of 1) protein_coding-intron (ENSMUSG00000036356.15, intron 3 of 9) -3664 ENSMUSG00000036356.15 ENSMUSG00000036356 ENSMUST00000139141 Csgalnact1 protein_coding Interval_121735 chr5 6028214 6028407 + 0 NA Intergenic Intergenic -13286 ENSMUSG00000088692.1 ENSMUSG00000088692 ENSMUST00000158067 Gm23838 snRNA Interval_149032 chr7 92515460 92515688 + 0 NA Intergenic Intergenic -45575 ENSMUSG00000030613.13 ENSMUSG00000030613 ENSMUST00000085017 Ccdc90b protein_coding Interval_128841 chr5 115542349 115544170 + 0 NA promoter-TSS (ENSMUSG00000029528.19) protein_coding-promoter-TSS (ENSMUSG00000029528.19) -16278 ENSMUSG00000067274.10 ENSMUSG00000067274 ENSMUST00000155584 Rplp0 protein_coding Interval_133509 chr6 6052704 6053226 + 0 NA intron (ENSMUSG00000015112.15, intron 14 of 17) protein_coding-intron (ENSMUSG00000015112.15, intron 14 of 17) -75572 ENSMUSG00000085416.1 ENSMUSG00000085416 ENSMUST00000130004 1700019G24Rik antisense Interval_99953 chr2 166072928 166075176 + 0 NA TTS (ENSMUSG00000027678.17) protein_coding-TTS (ENSMUSG00000027678.17) 26134 ENSMUSG00000027678.17 ENSMUSG00000027678 ENSMUST00000139394 Ncoa3 protein_coding Interval_85193 chr19 23634156 23635100 + 0 NA intron (ENSMUSG00000033053.4, intron 1 of 5) protein_coding-intron (ENSMUSG00000033053.4, intron 1 of 5) -8781 ENSMUSG00000088027.1 ENSMUSG00000088027 ENSMUST00000157402 Gm22144 snoRNA Interval_174389 chrX 151049580 151050577 + 0 NA intron (ENSMUSG00000025265.14, intron 1 of 17) protein_coding-intron (ENSMUSG00000025265.14, intron 1 of 17) -32756 ENSMUSG00000025266.11 ENSMUSG00000025266 ENSMUST00000156233 Gnl3l protein_coding Interval_21661 chr11 3527232 3528064 + 0 NA exon (ENSMUSG00000020439.17, exon 1 of 9) protein_coding-exon (ENSMUSG00000020439.17, exon 1 of 9) -2509 ENSMUSG00000087291.1 ENSMUSG00000087291 ENSMUST00000123459 Gm11946 processed_transcript Interval_123588 chr5 33640396 33641521 + 0 NA TTS (ENSMUSG00000004642.13) protein_coding-TTS (ENSMUSG00000004642.13) 11033 ENSMUSG00000097271.1 ENSMUSG00000097271 ENSMUST00000181102 Gm9903 protein_coding Interval_41415 chr12 113594584 113594787 + 0 NA Intergenic Intergenic 3292 ENSMUSG00000095612.2 ENSMUSG00000095612 ENSMUST00000103444 Ighv5-4 IG_V_gene Interval_9302 chr1 156048658 156049411 + 0 NA intron (ENSMUSG00000050565.16, intron 1 of 1) protein_coding-intron (ENSMUSG00000050565.16, intron 1 of 4) 13262 ENSMUSG00000050565.16 ENSMUSG00000050565 ENSMUST00000125371 Tor1aip2 protein_coding Interval_78493 chr18 13692110 13692689 + 0 NA intron (ENSMUSG00000024420.9, intron 4 of 5) protein_coding-intron (ENSMUSG00000024420.9, intron 7 of 7) -90999 ENSMUSG00000117608.1 ENSMUSG00000117608 ENSMUST00000234112 AC103362.1 lincRNA Interval_55161 chr14 78748019 78748608 + 0 NA Intergenic Intergenic -13790 ENSMUSG00000115514.1 ENSMUSG00000115514 ENSMUST00000226762 Gm49009 processed_pseudogene Interval_30060 chr11 88941196 88942309 + 0 NA intron (ENSMUSG00000000278.10, intron 5 of 12) protein_coding-intron (ENSMUSG00000000278.10, intron 5 of 12) 13713 ENSMUSG00000000278.10 ENSMUSG00000000278 ENSMUST00000000287 Scpep1 protein_coding Interval_139749 chr6 108367441 108367630 + 0 NA intron (ENSMUSG00000030102.11, intron 9 of 22) protein_coding-intron (ENSMUSG00000030102.11, intron 12 of 61) -19899 ENSMUSG00000030102.11 ENSMUSG00000030102 ENSMUST00000205005 Itpr1 protein_coding Interval_166483 chr9 59959357 59960471 + 0 NA TTS (ENSMUSG00000084847.7) lincRNA-TTS (ENSMUSG00000084847.7) 1857 ENSMUSG00000084847.7 ENSMUSG00000084847 ENSMUST00000133523 Gm15507 lincRNA Interval_69896 chr16 97989507 97990209 + 0 NA Intergenic Intergenic 7110 ENSMUSG00000097874.3 ENSMUSG00000097874 ENSMUST00000183627 C030010L15Rik antisense Interval_107045 chr3 103138200 103139382 + 0 NA intron (ENSMUSG00000007379.15, intron 5 of 18) protein_coding-intron (ENSMUSG00000007379.15, intron 4 of 11) -10373 ENSMUSG00000007379.15 ENSMUSG00000007379 ENSMUST00000174486 Dennd2c protein_coding Interval_135617 chr6 41620358 41620604 + 0 NA TTS (ENSMUSG00000029868.14) protein_coding-TTS (ENSMUSG00000029868.14) 7183 ENSMUSG00000029869.7 ENSMUSG00000029869 ENSMUST00000167497 Ephb6 protein_coding Interval_32743 chr11 110274572 110275093 + 0 NA intron (ENSMUSG00000018800.14, intron 36 of 38) protein_coding-intron (ENSMUSG00000018800.14, intron 36 of 38) -23056 ENSMUSG00000044749.13 ENSMUSG00000044749 ENSMUST00000150988 Abca6 protein_coding Interval_65988 chr16 30740567 30741641 + 0 NA Intergenic Intergenic 52151 ENSMUSG00000116570.1 ENSMUSG00000116570 ENSMUST00000231445 Gm49754 lincRNA Interval_100945 chr2 173561945 173562263 + 0 NA Intergenic Intergenic 16176 ENSMUSG00000027517.14 ENSMUSG00000027517 ENSMUST00000147693 Ankrd60 protein_coding Interval_81753 chr18 64411923 64412133 + 0 NA Intergenic Intergenic 16641 ENSMUSG00000118375.1 ENSMUSG00000118375 ENSMUST00000237830 Gm36804 processed_pseudogene Interval_173080 chrX 70874885 70875151 + 0 NA Intergenic Intergenic -103263 ENSMUSG00000080938.1 ENSMUSG00000080938 ENSMUST00000120462 Gm6062 processed_pseudogene Interval_136224 chr6 52157924 52159378 + 0 NA promoter-TSS (ENSMUSG00000029844.9) protein_coding-promoter-TSS (ENSMUSG00000029844.9) 127 ENSMUSG00000087658.2 ENSMUSG00000087658 ENSMUST00000159006 Hotairm1 antisense Interval_152547 chr7 134223906 134225856 + 0 NA exon (ENSMUSG00000054555.11, exon 1 of 23) protein_coding-exon (ENSMUSG00000054555.11, exon 1 of 23) 4439 ENSMUSG00000050066.6 ENSMUSG00000050066 ENSMUST00000206697 A130023I24Rik processed_transcript Interval_15040 chr10 42152324 42153694 + 0 NA Intergenic Intergenic -97703 ENSMUSG00000085666.3 ENSMUSG00000085666 ENSMUST00000121229 Tdg-ps2 processed_pseudogene Interval_164602 chr9 39946141 39946377 + 0 NA Intergenic Intergenic 5787 ENSMUSG00000043331.6 ENSMUSG00000043331 ENSMUST00000054067 Olfr975 protein_coding Interval_147024 chr7 58618200 58618538 + 0 NA Intergenic Intergenic -37797 ENSMUSG00000025324.8 ENSMUSG00000025324 ENSMUST00000168747 Atp10a protein_coding Interval_112885 chr4 45815488 45816000 + 0 NA intron (ENSMUSG00000035551.6, intron 1 of 2) protein_coding-intron (ENSMUSG00000035551.6, intron 2 of 4) 619 ENSMUSG00000035551.6 ENSMUSG00000035551 ENSMUST00000145102 Igfbpl1 protein_coding Interval_172578 chrX 37030486 37031129 + 0 NA Intergenic Intergenic 6518 ENSMUSG00000081220.2 ENSMUSG00000081220 ENSMUST00000118460 Gm14542 processed_pseudogene Interval_53249 chr14 55578001 55579044 + 0 NA promoter-TSS (ENSMUSG00000022216.17) protein_coding-promoter-TSS (ENSMUSG00000022216.17) 47 ENSMUSG00000022216.17 ENSMUSG00000022216 ENSMUST00000174419 Psme1 protein_coding Interval_4306 chr1 72593244 72594087 + 0 NA intron (ENSMUSG00000039354.16, intron 5 of 7) protein_coding-intron (ENSMUSG00000039354.16, intron 5 of 16) 10414 ENSMUSG00000039354.16 ENSMUSG00000039354 ENSMUST00000126832 Smarcal1 protein_coding Interval_3232 chr1 55029097 55029455 + 0 NA Intergenic Intergenic -1882 ENSMUSG00000025982.13 ENSMUSG00000025982 ENSMUST00000188419 Sf3b1 protein_coding Interval_30235 chr11 91362251 91362520 + 0 NA Intergenic Intergenic 215173 ENSMUSG00000046755.5 ENSMUSG00000046755 ENSMUST00000061019 Kif2b protein_coding Interval_157405 chr8 70158153 70158968 + 0 NA intron (ENSMUSG00000079033.10, intron 1 of 8) protein_coding-intron (ENSMUSG00000079033.10, intron 1 of 7) -13848 ENSMUSG00000002342.17 ENSMUSG00000002342 ENSMUST00000143543 Tmem161a protein_coding Interval_104659 chr3 69186883 69187147 + 0 NA Intergenic Intergenic -35404 ENSMUSG00000098207.1 ENSMUSG00000098207 ENSMUST00000183126 Arl14 protein_coding Interval_14930 chr10 41245142 41245382 + 0 NA intron (ENSMUSG00000038417.4, intron 15 of 22) protein_coding-intron (ENSMUSG00000038417.4, intron 15 of 22) 29217 ENSMUSG00000093933.1 ENSMUSG00000093933 ENSMUST00000104332 Gm25526 snoRNA Interval_56694 chr14 121430587 121431022 + 0 NA Intergenic Intergenic 24958 ENSMUSG00000115123.1 ENSMUSG00000115123 ENSMUST00000227451 Gm33299 lincRNA Interval_88135 chr19 59471109 59471633 + 0 NA Intergenic Intergenic 8569 ENSMUSG00000043969.4 ENSMUSG00000043969 ENSMUST00000174573 Emx2 protein_coding Interval_43598 chr13 34002062 34003346 + 0 NA promoter-TSS (ENSMUSG00000060147.15) protein_coding-promoter-TSS (ENSMUSG00000060147.15) 5627 ENSMUSG00000090628.1 ENSMUSG00000090628 ENSMUST00000165849 Gm17083 processed_pseudogene Interval_66819 chr16 37882165 37882982 + 0 NA promoter-TSS (ENSMUSG00000083405.1) transcribed_processed_pseudogene-promoter-TSS (ENSMUSG00000083405.1) 31 ENSMUSG00000083405.1 ENSMUSG00000083405 ENSMUST00000119947 Gm15725 transcribed_processed_pseudogene Interval_39694 chr12 93152579 93152989 + 0 NA Intergenic Intergenic -154633 ENSMUSG00000113194.1 ENSMUSG00000113194 ENSMUST00000223384 Gm47998 processed_pseudogene Interval_159655 chr8 96127790 96129015 + 0 NA Intergenic Intergenic -181117 ENSMUSG00000110623.1 ENSMUSG00000110623 ENSMUST00000212446 Gm32005 lincRNA Interval_27067 chr11 62654397 62655180 + 0 NA intron (ENSMUSG00000048497.11, intron 1 of 1) protein_coding-intron (ENSMUSG00000048497.11, intron 1 of 1) 5953 ENSMUSG00000048497.11 ENSMUSG00000048497 ENSMUST00000129162 Mmgt2 protein_coding Interval_88540 chr2 5946605 5947349 + 0 NA Intergenic Intergenic -35141 ENSMUSG00000025815.13 ENSMUSG00000025815 ENSMUST00000151649 Dhtkd1 protein_coding Interval_92362 chr2 59271733 59273001 + 0 NA intron (ENSMUSG00000026991.20, intron 3 of 3) protein_coding-intron (ENSMUSG00000026991.20, intron 3 of 21) 110440 ENSMUSG00000026991.20 ENSMUSG00000026991 ENSMUST00000124127 Pkp4 protein_coding Interval_161215 chr8 118744210 118745190 + 0 NA intron (ENSMUSG00000031841.19, intron 3 of 7) protein_coding-intron (ENSMUSG00000031841.19, intron 3 of 13) 17800 ENSMUSG00000087707.1 ENSMUSG00000087707 ENSMUST00000157082 Gm22999 snoRNA Interval_41481 chr12 114922485 114922757 + 0 NA Intergenic Intergenic 2747 ENSMUSG00000102991.1 ENSMUSG00000102991 ENSMUST00000194231 Ighv1-40 IG_V_pseudogene Interval_153579 chr8 3507148 3507545 + 0 NA TTS (ENSMUSG00000004567.16) protein_coding-TTS (ENSMUSG00000004567.16) -4455 ENSMUSG00000004567.16 ENSMUSG00000004567 ENSMUST00000161705 Mcoln1 protein_coding Interval_131483 chr5 137493671 137494800 + 0 NA intron (ENSMUSG00000029711.13, intron 1 of 5) protein_coding-intron (ENSMUSG00000029711.13, intron 1 of 5) 8190 ENSMUSG00000029715.5 ENSMUSG00000029715 ENSMUST00000031728 Pop7 protein_coding Interval_1975 chr1 35287142 35287630 + 0 NA Intergenic Intergenic -108302 ENSMUSG00000077231.1 ENSMUSG00000077231 ENSMUST00000104043 Gm25096 snoRNA Interval_70014 chr17 4497976 4498835 + 0 NA Intergenic Intergenic -136573 ENSMUSG00000116767.1 ENSMUSG00000116767 ENSMUST00000232624 4930517M08Rik lincRNA Interval_3989 chr1 65596130 65596341 + 0 NA Intergenic Intergenic 43553 ENSMUSG00000082774.1 ENSMUSG00000082774 ENSMUST00000117848 Gm8805 processed_pseudogene Interval_18717 chr10 89654529 89655608 + 0 NA promoter-TSS (ENSMUSG00000069539.11) protein_coding-promoter-TSS (ENSMUSG00000069539.11) 31200 ENSMUSG00000069539.11 ENSMUSG00000069539 ENSMUST00000174429 Scyl2 protein_coding Interval_152206 chr7 130645584 130647347 + 0 NA intron (ENSMUSG00000030852.18, intron 1 of 15) protein_coding-intron (ENSMUSG00000030852.18, intron 2 of 20) 7927 ENSMUSG00000109225.1 ENSMUSG00000109225 ENSMUST00000207466 4930513N20Rik TEC Interval_60556 chr15 74919405 74920202 + 0 NA Intergenic Intergenic -4641 ENSMUSG00000100880.2 ENSMUSG00000100880 ENSMUST00000186324 Gm6610 processed_pseudogene Interval_35530 chr12 24541542 24542380 + 0 NA intron (ENSMUSG00000059669.8, intron 8 of 11) protein_coding-intron (ENSMUSG00000059669.8, intron 8 of 14) -29122 ENSMUSG00000113692.1 ENSMUSG00000113692 ENSMUST00000220562 Gm47482 processed_pseudogene Interval_51081 chr14 22140247 22141206 + 0 NA intron (ENSMUSG00000063458.13, intron 2 of 3) protein_coding-intron (ENSMUSG00000063458.13, intron 2 of 6) -104623 ENSMUSG00000114205.1 ENSMUSG00000114205 ENSMUST00000225573 Gm7480 antisense Interval_46416 chr13 64995843 64997374 + 0 NA Intergenic Intergenic -2326 ENSMUSG00000113807.1 ENSMUSG00000113807 ENSMUST00000221983 Gm6888 processed_pseudogene Interval_118261 chr4 129883687 129885045 + 0 NA Intergenic Intergenic -11207 ENSMUSG00000065768.1 ENSMUSG00000065768 ENSMUST00000083834 Gm23845 snRNA Interval_18445 chr10 86056457 86057487 + 0 NA TTS (ENSMUSG00000059602.14) protein_coding-TTS (ENSMUSG00000059602.14) -18184 ENSMUSG00000077265.1 ENSMUSG00000077265 ENSMUST00000104077 Gm24430 snRNA Interval_11481 chr1 182124377 182125344 + 0 NA promoter-TSS (ENSMUSG00000026511.7) protein_coding-promoter-TSS (ENSMUSG00000026511.7) 3329 ENSMUSG00000103018.1 ENSMUSG00000103018 ENSMUST00000194902 Gm17968 processed_pseudogene Interval_163046 chr9 14783981 14785193 + 0 NA promoter-TSS (ENSMUSG00000031928.15) protein_coding-promoter-TSS (ENSMUSG00000031928.15) 269 ENSMUSG00000031931.4 ENSMUSG00000031931 ENSMUST00000214882 Ankrd49 protein_coding Interval_26956 chr11 61837820 61838149 + 0 NA intron (ENSMUSG00000004798.14, intron 5 of 24) protein_coding-intron (ENSMUSG00000004798.14, intron 5 of 26) -27491 ENSMUSG00000098196.1 ENSMUSG00000098196 ENSMUST00000182516 Gm26964 lincRNA Interval_130417 chr5 127471825 127472214 + 0 NA intron (ENSMUSG00000034324.16, intron 3 of 8) protein_coding-intron (ENSMUSG00000034324.16, intron 3 of 8) -81235 ENSMUSG00000034324.16 ENSMUSG00000034324 ENSMUST00000145748 Tmem132c protein_coding Interval_92830 chr2 66047037 66047320 + 0 NA Intergenic Intergenic 48046 ENSMUSG00000026994.9 ENSMUSG00000026994 ENSMUST00000153563 Galnt3 protein_coding Interval_111161 chr4 13461394 13462866 + 0 NA Intergenic Intergenic 17360 ENSMUSG00000081327.1 ENSMUSG00000081327 ENSMUST00000122192 Gm11819 processed_pseudogene Interval_55962 chr14 103345760 103347174 + 0 NA promoter-TSS (ENSMUSG00000033004.16) protein_coding-promoter-TSS (ENSMUSG00000033004.16) 333 ENSMUSG00000033004.16 ENSMUSG00000033004 ENSMUST00000162537 Mycbp2 protein_coding Interval_63513 chr15 101567943 101568340 + 0 NA exon (ENSMUSG00000022986.5, exon 7 of 9) protein_coding-exon (ENSMUSG00000022986.5, exon 7 of 9) -2042 ENSMUSG00000106412.1 ENSMUSG00000106412 ENSMUST00000196179 Gm44460 miRNA Interval_138477 chr6 88518114 88519535 + 0 NA promoter-TSS (ENSMUSG00000030082.14) protein_coding-promoter-TSS (ENSMUSG00000030082.14) -189 ENSMUSG00000107698.1 ENSMUSG00000107698 ENSMUST00000203376 Gm44430 TEC Interval_53611 chr14 60015912 60016398 + 0 NA intron (ENSMUSG00000021983.16, intron 17 of 35) protein_coding-intron (ENSMUSG00000021983.16, intron 17 of 35) 24336 ENSMUSG00000087286.1 ENSMUSG00000087286 ENSMUST00000132939 Gm9013 processed_pseudogene Interval_4042 chr1 66775792 66776175 + 0 NA exon (ENSMUSG00000102776.1, exon 1 of 1) TEC-exon (ENSMUSG00000102776.1, exon 1 of 1) 472 ENSMUSG00000102776.1 ENSMUSG00000102776 ENSMUST00000195562 Gm38162 TEC Interval_88782 chr2 10651444 10652259 + 0 NA Intergenic Intergenic 133696 ENSMUSG00000080594.1 ENSMUSG00000080594 ENSMUST00000116944 Mir669h miRNA Interval_69405 chr16 92903937 92904540 + 0 NA Intergenic Intergenic 42361 ENSMUSG00000116805.1 ENSMUSG00000116805 ENSMUST00000231501 Gm49723 lincRNA Interval_32388 chr11 107292102 107293066 + 0 NA intron (ENSMUSG00000040430.18, intron 5 of 7) protein_coding-intron (ENSMUSG00000040430.18, intron 4 of 7) -38124 ENSMUSG00000081995.1 ENSMUSG00000081995 ENSMUST00000119399 Gm11719 processed_pseudogene Interval_159539 chr8 95331235 95332609 + 0 NA promoter-TSS (ENSMUSG00000031792.15) protein_coding-promoter-TSS (ENSMUSG00000031792.15) 28 ENSMUSG00000046556.7 ENSMUSG00000046556 ENSMUST00000057717 Zfp319 protein_coding Interval_62512 chr15 93655166 93655449 + 0 NA Intergenic Intergenic 24342 ENSMUSG00000115993.1 ENSMUSG00000115993 ENSMUST00000231103 Zfp42-ps1 processed_pseudogene Interval_172947 chrX 57325709 57327001 + 0 NA exon (ENSMUSG00000031133.12, exon 1 of 8) protein_coding-exon (ENSMUSG00000031133.12, exon 1 of 8) 244 ENSMUSG00000031133.12 ENSMUSG00000031133 ENSMUST00000135098 Arhgef6 protein_coding Interval_113962 chr4 61858040 61858403 + 0 NA promoter-TSS (ENSMUSG00000081053.1) unprocessed_pseudogene-promoter-TSS (ENSMUSG00000081053.1) -345 ENSMUSG00000081053.1 ENSMUSG00000081053 ENSMUST00000120723 Mup-ps17 unprocessed_pseudogene Interval_116254 chr4 109062686 109062981 + 0 NA intron (ENSMUSG00000028559.17, intron 22 of 23) protein_coding-intron (ENSMUSG00000028559.17, intron 22 of 23) 38627 ENSMUSG00000053510.12 ENSMUSG00000053510 ENSMUST00000125063 Nrd1 protein_coding Interval_80151 chr18 37886982 37887207 + 0 NA intron (ENSMUSG00000024456.16, intron 16 of 25) protein_coding-intron (ENSMUSG00000024456.16, intron 18 of 27) 10848 ENSMUSG00000024456.16 ENSMUSG00000024456 ENSMUST00000129688 Diaph1 protein_coding Interval_162486 chr9 3133357 3133678 + 0 NA TTS (ENSMUSG00000042360.12) processed_transcript-TTS (ENSMUSG00000042360.12) 5222 ENSMUSG00000110425.1 ENSMUSG00000110425 ENSMUST00000212713 Gm32390 processed_pseudogene Interval_45645 chr13 56478064 56478314 + 0 NA Intergenic Intergenic 4057 ENSMUSG00000021538.3 ENSMUSG00000021538 ENSMUST00000022019 Il9 protein_coding Interval_93925 chr2 79444041 79445378 + 0 NA intron (ENSMUSG00000075256.9, intron 1 of 10) protein_coding-intron (ENSMUSG00000075256.9, intron 1 of 10) 12042 ENSMUSG00000034701.9 ENSMUSG00000034701 ENSMUST00000041099 Neurod1 protein_coding Interval_110639 chr4 5643895 5644823 + 0 NA exon (ENSMUSG00000049119.14, exon 1 of 3) protein_coding-exon (ENSMUSG00000049119.14, exon 1 of 3) 12031 ENSMUSG00000086066.7 ENSMUSG00000086066 ENSMUST00000130895 4930423M02Rik lincRNA Interval_115998 chr4 106881057 106881657 + 0 NA Intergenic Intergenic -33437 ENSMUSG00000086940.1 ENSMUSG00000086940 ENSMUST00000151369 Gm12746 lincRNA Interval_158940 chr8 88118300 88119314 + 0 NA promoter-TSS (ENSMUSG00000036810.16) protein_coding-promoter-TSS (ENSMUSG00000036810.16) 29 ENSMUSG00000036810.16 ENSMUSG00000036810 ENSMUST00000117775 Cnep1r1 protein_coding Interval_36187 chr12 38342609 38342983 + 0 NA intron (ENSMUSG00000036095.11, intron 20 of 22) protein_coding-intron (ENSMUSG00000036095.11, intron 20 of 24) 26434 ENSMUSG00000113248.1 ENSMUSG00000113248 ENSMUST00000222381 Gm18338 processed_pseudogene Interval_45636 chr13 56414253 56414790 + 0 NA Intergenic Intergenic -12073 ENSMUSG00000110477.1 ENSMUSG00000110477 ENSMUST00000212844 Gm3045 protein_coding Interval_118354 chr4 130841390 130841679 + 0 NA Intergenic Intergenic -15221 ENSMUSG00000097224.1 ENSMUSG00000097224 ENSMUST00000181227 Gm26716 antisense Interval_169315 chr9 96343708 96343988 + 0 NA promoter-TSS (ENSMUSG00000032412.8) protein_coding-promoter-TSS (ENSMUSG00000032412.8) -267 ENSMUSG00000032412.8 ENSMUSG00000032412 ENSMUST00000187341 Atp1b3 protein_coding Interval_126973 chr5 98716288 98716523 + 0 NA intron (ENSMUSG00000057816.7, intron 4 of 6) protein_coding-intron (ENSMUSG00000057816.7, intron 3 of 5) -138046 ENSMUSG00000029335.5 ENSMUSG00000029335 ENSMUST00000200388 Bmp3 protein_coding Interval_36429 chr12 44492569 44493507 + 0 NA intron (ENSMUSG00000020598.16, intron 3 of 24) protein_coding-intron (ENSMUSG00000020598.16, intron 3 of 30) 83248 ENSMUSG00000112448.1 ENSMUSG00000112448 ENSMUST00000218248 Gm48182 TEC Interval_8481 chr1 139935032 139935747 + 0 NA intron (ENSMUSG00000089991.2, intron 1 of 15) unprocessed_pseudogene-intron (ENSMUSG00000089991.2, intron 1 of 15) 1088 ENSMUSG00000089991.2 ENSMUSG00000089991 ENSMUST00000134229 Gm16332 unprocessed_pseudogene Interval_169259 chr9 95928281 95928483 + 0 NA intron (ENSMUSG00000032409.15, intron 35 of 46) protein_coding-intron (ENSMUSG00000032409.15, intron 35 of 46) -6231 ENSMUSG00000089085.1 ENSMUSG00000089085 ENSMUST00000158460 Gm24004 snRNA Interval_170301 chr9 106788309 106789701 + 0 NA exon (ENSMUSG00000040661.6, exon 1 of 22) protein_coding-exon (ENSMUSG00000040661.6, exon 1 of 22) 171 ENSMUSG00000040661.6 ENSMUSG00000040661 ENSMUST00000191300 Rad54l2 protein_coding Interval_121368 chr4 155295164 155295414 + 0 NA intron (ENSMUSG00000029053.16, intron 2 of 4) protein_coding-intron (ENSMUSG00000029053.16, intron 5 of 17) 45323 ENSMUSG00000073684.13 ENSMUSG00000073684 ENSMUST00000156404 Faap20 protein_coding Interval_7198 chr1 127755818 127758262 + 0 NA intron (ENSMUSG00000026348.7, intron 1 of 3) protein_coding-intron (ENSMUSG00000026348.7, intron 6 of 9) 283 ENSMUSG00000026348.7 ENSMUSG00000026348 ENSMUST00000186537 Acmsd protein_coding Interval_101799 chr3 9605980 9606577 + 0 NA intron (ENSMUSG00000040209.12, intron 1 of 8) protein_coding-intron (ENSMUSG00000040209.12, intron 1 of 8) -40979 ENSMUSG00000040209.12 ENSMUSG00000040209 ENSMUST00000192832 Zfp704 protein_coding Interval_108881 chr3 132956709 132956978 + 0 NA Intergenic Intergenic 16973 ENSMUSG00000089431.1 ENSMUSG00000089431 ENSMUST00000158806 Gm23196 snRNA Interval_41195 chr12 111726091 111727217 + 0 NA exon (ENSMUSG00000090193.1, exon 1 of 2) processed_transcript-exon (ENSMUSG00000090193.1, exon 1 of 2) 262 ENSMUSG00000090193.1 ENSMUSG00000090193 ENSMUST00000159897 Gm15995 processed_transcript Interval_88735 chr2 10079815 10081001 + 0 NA promoter-TSS (ENSMUSG00000025781.14) protein_coding-promoter-TSS (ENSMUSG00000025781.14) -549 ENSMUSG00000025781.14 ENSMUSG00000025781 ENSMUST00000130067 Atp5c1 protein_coding Interval_116517 chr4 114964780 114966346 + 0 NA intron (ENSMUSG00000028719.8, intron 3 of 5) protein_coding-intron (ENSMUSG00000028719.8, intron 2 of 5) 21586 ENSMUSG00000028719.8 ENSMUSG00000028719 ENSMUST00000131014 Cmpk1 protein_coding Interval_20453 chr10 117697407 117698137 + 0 NA intron (ENSMUSG00000020184.15, intron 5 of 9) protein_coding-intron (ENSMUSG00000020184.15, intron 6 of 11) 12250 ENSMUSG00000020184.15 ENSMUSG00000020184 ENSMUST00000151725 Mdm2 protein_coding Interval_127247 chr5 101851991 101852584 + 0 NA promoter-TSS (ENSMUSG00000043940.15) protein_coding-promoter-TSS (ENSMUSG00000043940.15) 14835 ENSMUSG00000092354.7 ENSMUSG00000092354 ENSMUST00000174312 Gm20548 antisense Interval_150286 chr7 109338586 109338831 + 0 NA intron (ENSMUSG00000031027.15, intron 1 of 10) protein_coding-intron (ENSMUSG00000031027.15, intron 3 of 12) 50167 ENSMUSG00000081370.1 ENSMUSG00000081370 ENSMUST00000120160 Gm9105 processed_pseudogene Interval_100382 chr2 168729701 168730215 + 0 NA intron (ENSMUSG00000027546.15, intron 1 of 4) protein_coding-intron (ENSMUSG00000027546.15, intron 1 of 27) 12006 ENSMUSG00000027546.15 ENSMUSG00000027546 ENSMUST00000156555 Atp9a protein_coding Interval_64097 chr16 8199624 8199831 + 0 NA Intergenic Intergenic -4248 ENSMUSG00000089506.1 ENSMUSG00000089506 ENSMUST00000158881 Gm23476 misc_RNA Interval_95520 chr2 111217299 111217520 + 0 NA intron (ENSMUSG00000027157.10, intron 6 of 15) protein_coding-intron (ENSMUSG00000027157.10, intron 6 of 15) -12210 ENSMUSG00000027157.10 ENSMUSG00000027157 ENSMUST00000028577 A26c3 protein_coding Interval_153705 chr8 4800402 4801791 + 0 NA Intergenic Intergenic -11434 ENSMUSG00000109034.1 ENSMUSG00000109034 ENSMUST00000207403 Gm44960 unprocessed_pseudogene Interval_130993 chr5 134451285 134451839 + 0 NA intron (ENSMUSG00000023079.14, intron 1 of 3) protein_coding-intron (ENSMUSG00000023079.14, intron 1 of 30) 2988 ENSMUSG00000076320.1 ENSMUSG00000076320 ENSMUST00000102365 Gm26340 miRNA Interval_105768 chr3 89237920 89238882 + 0 NA intron (ENSMUSG00000042766.17, intron 7 of 9) protein_coding-intron (ENSMUSG00000042766.17, intron 7 of 9) 7162 ENSMUSG00000042784.9 ENSMUSG00000042784 ENSMUST00000139206 Muc1 protein_coding Interval_154451 chr8 17909321 17910296 + 0 NA Intergenic Intergenic 365013 ENSMUSG00000088320.1 ENSMUSG00000088320 ENSMUST00000157695 Gm25665 snoRNA Interval_165682 chr9 50900779 50901115 + 0 NA intron (ENSMUSG00000037112.16, intron 9 of 14) protein_coding-intron (ENSMUSG00000037112.16, intron 9 of 15) 12997 ENSMUSG00000088708.1 ENSMUSG00000088708 ENSMUST00000158083 Gm25558 snRNA Interval_98805 chr2 155115116 155115821 + 0 NA Intergenic Intergenic -15387 ENSMUSG00000087254.1 ENSMUSG00000087254 ENSMUST00000142569 2310005A03Rik lincRNA Interval_74293 chr17 48610783 48611615 + 0 NA Intergenic Intergenic -6624 ENSMUSG00000077708.1 ENSMUSG00000077708 ENSMUST00000104520 Gm24071 snoRNA Interval_96946 chr2 129799799 129801938 + 0 NA intron (ENSMUSG00000037885.18, intron 1 of 2) protein_coding-intron (ENSMUSG00000037885.18, intron 1 of 3) 351 ENSMUSG00000037885.18 ENSMUSG00000037885 ENSMUST00000166282 Stk35 protein_coding Interval_8302 chr1 137013047 137013950 + 0 NA Intergenic Intergenic -23228 ENSMUSG00000088970.1 ENSMUSG00000088970 ENSMUST00000158345 Gm23763 snRNA Interval_109997 chr3 152395286 152397021 + 0 NA promoter-TSS (ENSMUSG00000039068.16) protein_coding-promoter-TSS (ENSMUSG00000039068.16) 21 ENSMUSG00000039068.16 ENSMUSG00000039068 ENSMUST00000135044 Zzz3 protein_coding Interval_110869 chr4 9172801 9173469 + 0 NA Intergenic Intergenic -36868 ENSMUSG00000075958.1 ENSMUSG00000075958 ENSMUST00000082782 Gm23423 snRNA Interval_88520 chr2 5801191 5801884 + 0 NA intron (ENSMUSG00000039128.13, intron 1 of 1) protein_coding-intron (ENSMUSG00000039128.13, intron 10 of 12) 21582 ENSMUSG00000039128.13 ENSMUSG00000039128 ENSMUST00000150876 Cdc123 protein_coding Interval_64871 chr16 16849202 16850000 + 0 NA promoter-TSS (ENSMUSG00000116729.1) processed_pseudogene-promoter-TSS (ENSMUSG00000116729.1) 97 ENSMUSG00000116729.1 ENSMUSG00000116729 ENSMUST00000231706 Gm49644 processed_pseudogene Interval_153666 chr8 4388612 4388919 + 0 NA intron (ENSMUSG00000109356.1, intron 6 of 7) unprocessed_pseudogene-intron (ENSMUSG00000109356.1, intron 6 of 7) -2961 ENSMUSG00000109241.1 ENSMUSG00000109241 ENSMUST00000208558 Gm7434 processed_pseudogene Interval_63269 chr15 100021350 100021802 + 0 NA Intergenic Intergenic -48289 ENSMUSG00000100084.2 ENSMUSG00000100084 ENSMUST00000188271 2310068J16Rik antisense Interval_140199 chr6 115344400 115345122 + 0 NA Intergenic Intergenic -38938 ENSMUSG00000000440.12 ENSMUSG00000000440 ENSMUST00000203896 Pparg protein_coding Interval_161775 chr8 122706141 122706364 + 0 NA intron (ENSMUSG00000092329.1, intron 1 of 15) protein_coding-intron (ENSMUSG00000092329.1, intron 1 of 15) -7350 ENSMUSG00000006362.16 ENSMUSG00000006362 ENSMUST00000148630 Cbfa2t3 protein_coding Interval_122768 chr5 25258256 25258559 + 0 NA intron (ENSMUSG00000038072.14, intron 7 of 11) protein_coding-intron (ENSMUSG00000038072.14, intron 7 of 11) -35254 ENSMUSG00000054116.1 ENSMUSG00000054116 ENSMUST00000066954 E130116L18Rik protein_coding Interval_85329 chr19 24847806 24848351 + 0 NA intron (ENSMUSG00000041731.13, intron 1 of 3) protein_coding-intron (ENSMUSG00000041731.13, intron 1 of 10) -8118 ENSMUSG00000117934.1 ENSMUSG00000117934 ENSMUST00000235519 Gm50342 unprocessed_pseudogene Interval_6956 chr1 121367314 121367538 + 0 NA Intergenic Intergenic -7526 ENSMUSG00000101791.1 ENSMUSG00000101791 ENSMUST00000190690 2210011K15Rik lincRNA Interval_155398 chr8 33248503 33249090 + 0 NA intron (ENSMUSG00000031583.13, intron 26 of 27) protein_coding-intron (ENSMUSG00000031583.13, intron 32 of 33) -56500 ENSMUSG00000083557.1 ENSMUSG00000083557 ENSMUST00000119347 Gm6877 processed_pseudogene Interval_68106 chr16 65115687 65115891 + 0 NA Intergenic Intergenic -9935 ENSMUSG00000050783.5 ENSMUSG00000050783 ENSMUST00000063076 Htr1f protein_coding Interval_39394 chr12 87131824 87132043 + 0 NA intron (ENSMUSG00000034126.5, intron 5 of 19) protein_coding-intron (ENSMUSG00000034126.5, intron 5 of 20) -15232 ENSMUSG00000021033.11 ENSMUSG00000021033 ENSMUST00000222222 Gstz1 protein_coding Interval_76145 chr17 75545009 75545219 + 0 NA intron (ENSMUSG00000002017.10, intron 2 of 4) protein_coding-intron (ENSMUSG00000002017.10, intron 2 of 7) 6759 ENSMUSG00000002017.10 ENSMUSG00000002017 ENSMUST00000141969 Fam98a protein_coding Interval_39871 chr12 99246101 99246345 + 0 NA TTS (ENSMUSG00000093419.1) processed_pseudogene-TTS (ENSMUSG00000093419.1) 552 ENSMUSG00000093419.1 ENSMUSG00000093419 ENSMUST00000177490 Gm19898 processed_pseudogene Interval_171150 chr9 114780151 114782267 + 0 NA intron (ENSMUSG00000052724.7, intron 1 of 2) protein_coding-intron (ENSMUSG00000032436.17, intron 1 of 4) 1109 ENSMUSG00000052724.7 ENSMUSG00000052724 ENSMUST00000150678 Gm9888 antisense Interval_111981 chr4 32947646 32949226 + 0 NA intron (ENSMUSG00000040183.13, intron 1 of 15) protein_coding-intron (ENSMUSG00000040183.13, intron 1 of 14) -16452 ENSMUSG00000094344.1 ENSMUSG00000094344 ENSMUST00000180255 Gm11942 processed_pseudogene Interval_140110 chr6 114282358 114285627 + 0 NA intron (ENSMUSG00000030310.10, intron 1 of 5) protein_coding-intron (ENSMUSG00000030310.10, intron 1 of 15) 1202 ENSMUSG00000030310.10 ENSMUSG00000030310 ENSMUST00000204540 Slc6a1 protein_coding Interval_9014 chr1 153091794 153093988 + 0 NA promoter-TSS (ENSMUSG00000042751.14) protein_coding-promoter-TSS (ENSMUSG00000042751.14) -589 ENSMUSG00000042751.14 ENSMUSG00000042751 ENSMUST00000190960 Nmnat2 protein_coding Interval_143973 chr7 18704067 18704592 + 0 NA Intergenic Intergenic -9261 ENSMUSG00000108882.1 ENSMUSG00000108882 ENSMUST00000207958 Gm44563 unprocessed_pseudogene Interval_16246 chr10 61694944 61696654 + 0 NA promoter-TSS (ENSMUSG00000020087.5) protein_coding-promoter-TSS (ENSMUSG00000020087.5) -848 ENSMUSG00000020087.5 ENSMUSG00000020087 ENSMUST00000218280 Tysnd1 protein_coding Interval_169580 chr9 99250099 99250309 + 0 NA intron (ENSMUSG00000056267.14, intron 2 of 15) protein_coding-intron (ENSMUSG00000056267.14, intron 2 of 17) -6599 ENSMUSG00000103638.1 ENSMUSG00000103638 ENSMUST00000195852 Gm38327 TEC Interval_142593 chr6 143706613 143706908 + 0 NA Intergenic Intergenic -55472 ENSMUSG00000086887.1 ENSMUSG00000086887 ENSMUST00000150559 1700060C16Rik lincRNA Interval_163503 chr9 21754816 21755074 + 0 NA TTS (ENSMUSG00000074476.6) protein_coding-TTS (ENSMUSG00000074476.6) 5337 ENSMUSG00000074476.6 ENSMUSG00000074476 ENSMUST00000214149 Spc24 protein_coding Interval_148457 chr7 81364660 81365178 + 0 NA intron (ENSMUSG00000025586.17, intron 3 of 11) protein_coding-intron (ENSMUSG00000025586.17, intron 3 of 11) -19692 ENSMUSG00000061787.15 ENSMUSG00000061787 ENSMUST00000138936 Rps17 protein_coding Interval_128852 chr5 115602057 115603104 + 0 NA exon (ENSMUSG00000041638.18, exon 34 of 58) protein_coding-exon (ENSMUSG00000041638.18, exon 34 of 58) 21631 ENSMUSG00000099047.1 ENSMUSG00000099047 ENSMUST00000184777 Mir7029 miRNA Interval_103078 chr3 35088746 35088972 + 0 NA Intergenic Intergenic -166208 ENSMUSG00000098862.1 ENSMUSG00000098862 ENSMUST00000183357 Mir6378 miRNA Interval_13474 chr10 18501758 18502335 + 0 NA intron (ENSMUSG00000039835.16, intron 3 of 6) protein_coding-intron (ENSMUSG00000039835.16, intron 3 of 6) 44018 ENSMUSG00000019853.6 ENSMUSG00000019853 ENSMUST00000214548 Hebp2 protein_coding Interval_144640 chr7 27290706 27291200 + 0 NA Intergenic Intergenic -18561 ENSMUSG00000083622.1 ENSMUSG00000083622 ENSMUST00000122093 Gm15570 processed_pseudogene Interval_117220 chr4 120697158 120698457 + 0 NA exon (ENSMUSG00000028631.7, exon 14 of 14) protein_coding-exon (ENSMUSG00000028631.7, exon 14 of 14) 31235 ENSMUSG00000070803.6 ENSMUSG00000070803 ENSMUST00000094814 Cited4 protein_coding Interval_123863 chr5 36081795 36082022 + 0 NA intron (ENSMUSG00000029093.14, intron 3 of 7) protein_coding-intron (ENSMUSG00000029093.14, intron 3 of 26) 97720 ENSMUSG00000029094.12 ENSMUSG00000029094 ENSMUST00000201482 Afap1 protein_coding Interval_135483 chr6 39567498 39568166 + 0 NA Intergenic Intergenic -8560 ENSMUSG00000046947.12 ENSMUSG00000046947 ENSMUST00000127427 Adck2 protein_coding Interval_96696 chr2 127237432 127237745 + 0 NA promoter-TSS (ENSMUSG00000003660.10) protein_coding-promoter-TSS (ENSMUSG00000003660.10) 779 ENSMUSG00000003660.10 ENSMUSG00000003660 ENSMUST00000131435 Snrnp200 protein_coding Interval_171282 chr9 116040750 116041032 + 0 NA exon (ENSMUSG00000080848.3, exon 1 of 1) processed_pseudogene-exon (ENSMUSG00000080848.3, exon 1 of 1) 173 ENSMUSG00000080848.3 ENSMUSG00000080848 ENSMUST00000117563 Gm9385 processed_pseudogene Interval_85345 chr19 25035020 25035876 + 0 NA intron (ENSMUSG00000052085.7, intron 1 of 3) protein_coding-intron (ENSMUSG00000052085.7, intron 1 of 47) -17165 ENSMUSG00000052085.7 ENSMUSG00000052085 ENSMUST00000236576 Dock8 protein_coding Interval_107360 chr3 106611013 106611232 + 0 NA Intergenic Intergenic 21862 ENSMUSG00000103053.1 ENSMUSG00000103053 ENSMUST00000192296 Gm38271 TEC Interval_58084 chr15 27751905 27752380 + 0 NA intron (ENSMUSG00000022263.10, intron 27 of 28) protein_coding-intron (ENSMUSG00000022263.10, intron 46 of 56) -91990 ENSMUSG00000056069.10 ENSMUSG00000056069 ENSMUST00000232492 Otulinl protein_coding Interval_163963 chr9 29898232 29898599 + 0 NA intron (ENSMUSG00000059974.10, intron 1 of 2) protein_coding-intron (ENSMUSG00000059974.10, intron 1 of 7) 165304 ENSMUSG00000111175.1 ENSMUSG00000111175 ENSMUST00000214849 Gm19640 processed_pseudogene Interval_147569 chr7 68319926 68320602 + 0 NA intron (ENSMUSG00000074071.11, intron 3 of 8) protein_coding-intron (ENSMUSG00000074071.11, intron 3 of 8) -3232 ENSMUSG00000109453.1 ENSMUSG00000109453 ENSMUST00000207912 4930405G09Rik TEC Interval_59193 chr15 47389253 47389563 + 0 NA Intergenic Intergenic -32507 ENSMUSG00000115534.1 ENSMUSG00000115534 ENSMUST00000227510 Gm7508 processed_pseudogene Interval_124043 chr5 37784743 37786051 + 0 NA Intergenic Intergenic -21909 ENSMUSG00000107131.1 ENSMUSG00000107131 ENSMUST00000201761 Gm43763 lincRNA Interval_41300 chr12 112576146 112577379 + 0 NA Intergenic Intergenic -27895 ENSMUSG00000037679.9 ENSMUSG00000037679 ENSMUST00000222275 Inf2 protein_coding Interval_34468 chr12 4463255 4463503 + 0 NA intron (ENSMUSG00000020647.10, intron 1 of 22) protein_coding-intron (ENSMUSG00000020647.10, intron 1 of 22) -45938 ENSMUSG00000111938.1 ENSMUSG00000111938 ENSMUST00000218374 2900045O20Rik lincRNA Interval_157269 chr8 68836690 68838316 + 0 NA Intergenic Intergenic 8646 ENSMUSG00000031864.16 ENSMUSG00000031864 ENSMUST00000212064 Ints10 protein_coding Interval_26495 chr11 58155836 58156352 + 0 NA intron (ENSMUSG00000037275.14, intron 7 of 27) protein_coding-intron (ENSMUSG00000037275.14, intron 7 of 27) 12445 ENSMUSG00000037275.14 ENSMUSG00000037275 ENSMUST00000134953 Gemin5 protein_coding Interval_22706 chr11 13530975 13531503 + 0 NA Intergenic Intergenic 533573 ENSMUSG00000084055.1 ENSMUSG00000084055 ENSMUST00000117869 Gm12004 processed_pseudogene Interval_10372 chr1 170101445 170101714 + 0 NA intron (ENSMUSG00000026674.9, intron 1 of 3) protein_coding-intron (ENSMUSG00000026674.9, intron 1 of 17) 9183 ENSMUSG00000026674.9 ENSMUSG00000026674 ENSMUST00000194619 Ddr2 protein_coding Interval_68350 chr16 73878758 73879844 + 0 NA Intergenic Intergenic 82559 ENSMUSG00000052516.19 ENSMUSG00000052516 ENSMUST00000156010 Robo2 protein_coding Interval_128892 chr5 115924272 115924480 + 0 NA intron (ENSMUSG00000029516.19, intron 10 of 10) protein_coding-intron (ENSMUSG00000029516.19, intron 9 of 46) 21946 ENSMUSG00000107263.1 ENSMUSG00000107263 ENSMUST00000201457 Gm42471 TEC Interval_160781 chr8 112197613 112197959 + 0 NA Intergenic Intergenic 39180 ENSMUSG00000110435.1 ENSMUSG00000110435 ENSMUST00000212314 Gm3635 processed_pseudogene Interval_137751 chr6 82067139 82067397 + 0 NA intron (ENSMUSG00000035104.14, intron 1 of 2) protein_coding-intron (ENSMUSG00000035104.14, intron 1 of 2) -14687 ENSMUSG00000087136.1 ENSMUSG00000087136 ENSMUST00000145950 Gm15864 antisense Interval_148767 chr7 86571619 86572738 + 0 NA Intergenic Intergenic -11684 ENSMUSG00000059319.3 ENSMUSG00000059319 ENSMUST00000078447 Olfr295 protein_coding Interval_42436 chr13 13529212 13529573 + 0 NA Intergenic Intergenic 14654 ENSMUSG00000114068.1 ENSMUSG00000114068 ENSMUST00000221249 Gm48783 TEC Interval_148458 chr7 81371951 81373025 + 0 NA promoter-TSS (ENSMUSG00000025586.17) protein_coding-promoter-TSS (ENSMUSG00000025586.17) -27261 ENSMUSG00000061787.15 ENSMUSG00000061787 ENSMUST00000138936 Rps17 protein_coding Interval_58908 chr15 39906806 39908000 + 0 NA intron (ENSMUSG00000022305.13, intron 1 of 1) protein_coding-intron (ENSMUSG00000022305.13, intron 1 of 6) 36287 ENSMUSG00000022305.13 ENSMUSG00000022305 ENSMUST00000146714 Lrp12 protein_coding Interval_94185 chr2 84904549 84904831 + 0 NA Intergenic Intergenic -17980 ENSMUSG00000050896.12 ENSMUSG00000050896 ENSMUST00000151759 Rtn4rl2 protein_coding Interval_166040 chr9 55899465 55901273 + 0 NA intron (ENSMUSG00000034007.10, intron 6 of 32) protein_coding-intron (ENSMUSG00000034007.10, intron 4 of 30) 37741 ENSMUSG00000034007.10 ENSMUSG00000034007 ENSMUST00000215323 Scaper protein_coding Interval_12843 chr10 6204637 6204952 + 0 NA Intergenic Intergenic -162882 ENSMUSG00000112179.1 ENSMUSG00000112179 ENSMUST00000219296 Gm3213 processed_pseudogene Interval_31075 chr11 98004878 98005707 + 0 NA exon (ENSMUSG00000020882.17, exon 13 of 14) protein_coding-exon (ENSMUSG00000020882.17, exon 13 of 14) -9363 ENSMUSG00000038352.15 ENSMUSG00000038352 ENSMUST00000107563 Arl5c protein_coding Interval_66453 chr16 33957498 33958442 + 0 NA intron (ENSMUSG00000022814.6, intron 4 of 4) protein_coding-intron (ENSMUSG00000022814.6, intron 5 of 5) -8269 ENSMUSG00000086083.1 ENSMUSG00000086083 ENSMUST00000145415 Gm15829 antisense Interval_18052 chr10 81559019 81559987 + 0 NA promoter-TSS (ENSMUSG00000054452.10) protein_coding-promoter-TSS (ENSMUSG00000054452.10) 15 ENSMUSG00000054452.10 ENSMUSG00000054452 ENSMUST00000218432 Tle5 protein_coding Interval_37403 chr12 67245574 67245789 + 0 NA Intergenic Intergenic 100069 ENSMUSG00000113364.1 ENSMUSG00000113364 ENSMUST00000222044 Gm48059 processed_pseudogene Interval_87380 chr19 48116692 48116896 + 0 NA promoter-TSS (ENSMUSG00000117690.1) lincRNA-promoter-TSS (ENSMUSG00000117690.1) -554 ENSMUSG00000117690.1 ENSMUSG00000117690 ENSMUST00000237618 Gm50430 lincRNA Interval_98277 chr2 150760655 150762289 + 0 NA exon (ENSMUSG00000033068.16, exon 6 of 6) protein_coding-exon (ENSMUSG00000033068.16, exon 6 of 6) 12391 ENSMUSG00000033068.16 ENSMUSG00000033068 ENSMUST00000139723 Entpd6 protein_coding Interval_164052 chr9 31179467 31179876 + 0 NA intron (ENSMUSG00000031996.17, intron 1 of 15) protein_coding-intron (ENSMUSG00000031996.17, intron 1 of 16) -18349 ENSMUSG00000031996.17 ENSMUSG00000031996 ENSMUST00000213273 Aplp2 protein_coding Interval_49797 chr13 115565878 115566170 + 0 NA Intergenic Intergenic -36252 ENSMUSG00000114551.1 ENSMUSG00000114551 ENSMUST00000225901 Gm6035 processed_pseudogene Interval_72303 chr17 29056254 29058090 + 0 NA promoter-TSS (ENSMUSG00000117007.1) lincRNA-promoter-TSS (ENSMUSG00000117007.1) -2572 ENSMUSG00000098994.1 ENSMUSG00000098994 ENSMUST00000183758 Gm27599 misc_RNA Interval_124253 chr5 42703933 42704703 + 0 NA Intergenic Intergenic -203904 ENSMUSG00000106813.1 ENSMUSG00000106813 ENSMUST00000202197 Gm7181 processed_pseudogene Interval_88521 chr2 5809942 5811617 + 0 NA promoter-TSS (ENSMUSG00000039128.13) protein_coding-promoter-TSS (ENSMUSG00000039128.13) 12340 ENSMUSG00000039128.13 ENSMUSG00000039128 ENSMUST00000150876 Cdc123 protein_coding Interval_30472 chr11 94587508 94588213 + 0 NA intron (ENSMUSG00000076435.3, intron 1 of 6) protein_coding-intron (ENSMUSG00000076435.3, intron 1 of 15) 13909 ENSMUSG00000076435.3 ENSMUSG00000076435 ENSMUST00000155122 Acsf2 protein_coding Interval_30955 chr11 97407904 97408474 + 0 NA Intergenic Intergenic -28096 ENSMUSG00000049807.16 ENSMUSG00000049807 ENSMUST00000093940 Arhgap23 protein_coding Interval_100056 chr2 166777540 166777787 + 0 NA Intergenic Intergenic 8918 ENSMUSG00000088063.1 ENSMUSG00000088063 ENSMUST00000157438 Gm24477 snRNA Interval_108219 chr3 122544436 122544619 + 0 NA intron (ENSMUSG00000039735.16, intron 14 of 14) protein_coding-intron (ENSMUSG00000039735.16, intron 13 of 13) -2846 ENSMUSG00000104773.1 ENSMUSG00000104773 ENSMUST00000196051 Mir7657 miRNA Interval_18264 chr10 84416820 84420170 + 0 NA intron (ENSMUSG00000020032.14, intron 1 of 6) protein_coding-intron (ENSMUSG00000020032.14, intron 1 of 6) -22331 ENSMUSG00000111583.1 ENSMUSG00000111583 ENSMUST00000214135 Gm47962 bidirectional_promoter_lncRNA Interval_107713 chr3 111724526 111724820 + 0 NA Intergenic Intergenic -64819 ENSMUSG00000105882.1 ENSMUSG00000105882 ENSMUST00000196237 Gm42905 TEC Interval_7858 chr1 134196397 134196881 + 0 NA intron (ENSMUSG00000042451.12, intron 3 of 9) protein_coding-intron (ENSMUSG00000042451.12, intron 3 of 10) 3182 ENSMUSG00000042451.12 ENSMUSG00000042451 ENSMUST00000191577 Mybph protein_coding Interval_75532 chr17 67815837 67816240 + 0 NA exon (ENSMUSG00000032796.8, exon 58 of 63) protein_coding-exon (ENSMUSG00000032796.8, exon 58 of 63) 35025 ENSMUSG00000090955.1 ENSMUSG00000090955 ENSMUST00000166414 Gm17097 processed_pseudogene Interval_25089 chr11 43781964 43782179 + 0 NA intron (ENSMUSG00000050541.14, intron 1 of 1) protein_coding-intron (ENSMUSG00000050541.14, intron 4 of 4) -34079 ENSMUSG00000041278.10 ENSMUSG00000041278 ENSMUST00000147984 Ttc1 protein_coding Interval_74480 chr17 51696678 51697141 + 0 NA Intergenic Intergenic 51775 ENSMUSG00000102973.1 ENSMUSG00000102973 ENSMUST00000194215 E430014B02Rik TEC Interval_98677 chr2 154202804 154203030 + 0 NA intron (ENSMUSG00000027485.15, intron 2 of 13) protein_coding-intron (ENSMUSG00000027485.15, intron 2 of 15) 12094 ENSMUSG00000027485.15 ENSMUSG00000027485 ENSMUST00000028987 Bpifb1 protein_coding Interval_100356 chr2 168614332 168614944 + 0 NA Intergenic Intergenic -12983 ENSMUSG00000027544.16 ENSMUSG00000027544 ENSMUST00000138546 Nfatc2 protein_coding Interval_63156 chr15 99432890 99433436 + 0 NA exon (ENSMUSG00000089968.1, exon 5 of 8) antisense-exon (ENSMUSG00000089968.1, exon 5 of 8) 5462 ENSMUSG00000089968.1 ENSMUSG00000089968 ENSMUST00000159738 Nckap5los antisense Interval_66045 chr16 31181783 31181966 + 0 NA intron (ENSMUSG00000049076.12, intron 1 of 23) protein_coding-intron (ENSMUSG00000049076.12, intron 1 of 21) 24004 ENSMUSG00000116943.1 ENSMUSG00000116943 ENSMUST00000231868 Gm18237 processed_pseudogene Interval_82128 chr18 67894266 67895195 + 0 NA Intergenic Intergenic -12898 ENSMUSG00000118326.1 ENSMUSG00000118326 ENSMUST00000235570 Gm8887 processed_pseudogene Interval_67482 chr16 49698649 49699701 + 0 NA promoter-TSS (ENSMUSG00000032965.11) protein_coding-promoter-TSS (ENSMUSG00000032965.11) -129 ENSMUSG00000032965.11 ENSMUSG00000032965 ENSMUST00000140914 Ift57 protein_coding Interval_88025 chr19 58064333 58066216 + 0 NA intron (ENSMUSG00000054843.9, intron 28 of 28) protein_coding-intron (ENSMUSG00000054843.9, intron 28 of 28) 14107 ENSMUSG00000093757.1 ENSMUSG00000093757 ENSMUST00000176631 Mir5623 miRNA Interval_164826 chr9 42263736 42264850 + 0 NA promoter-TSS (ENSMUSG00000032018.14) protein_coding-promoter-TSS (ENSMUSG00000032018.14) -38 ENSMUSG00000032018.14 ENSMUSG00000032018 ENSMUST00000217513 Sc5d protein_coding Interval_98354 chr2 151733511 151733781 + 0 NA intron (ENSMUSG00000032869.15, intron 1 of 4) protein_coding-intron (ENSMUSG00000032869.15, intron 3 of 6) 7647 ENSMUSG00000032869.15 ENSMUSG00000032869 ENSMUST00000123449 Psmf1 protein_coding Interval_171489 chr9 118755401 118756584 + 0 NA intron (ENSMUSG00000039115.13, intron 1 of 13) protein_coding-intron (ENSMUSG00000039115.13, intron 15 of 27) 81963 ENSMUSG00000066270.3 ENSMUSG00000066270 ENSMUST00000139408 Gm10157 processed_pseudogene Interval_54592 chr14 70895892 70896130 + 0 NA exon (ENSMUSG00000022103.10, exon 2 of 9) protein_coding-exon (ENSMUSG00000022103.10, exon 2 of 9) 5483 ENSMUSG00000022103.10 ENSMUSG00000022103 ENSMUST00000227633 Gfra2 protein_coding Interval_42133 chr13 9081677 9082452 + 0 NA Intergenic Intergenic -5613 ENSMUSG00000113543.1 ENSMUSG00000113543 ENSMUST00000221989 Gm36264 lincRNA Interval_27850 chr11 70389306 70389630 + 0 NA Intergenic Intergenic 20563 ENSMUSG00000018921.11 ENSMUSG00000018921 ENSMUST00000135148 Pelp1 protein_coding Interval_3234 chr1 55040104 55040336 + 0 NA Intergenic Intergenic -12826 ENSMUSG00000025982.13 ENSMUSG00000025982 ENSMUST00000188419 Sf3b1 protein_coding Interval_144505 chr7 25536000 25536794 + 0 NA intron (ENSMUSG00000053714.8, intron 6 of 6) protein_coding-intron (ENSMUSG00000054385.14, intron 2 of 8) 696 ENSMUSG00000054385.14 ENSMUSG00000054385 ENSMUST00000145681 Ceacam2 protein_coding Interval_58826 chr15 38342858 38343208 + 0 NA exon (ENSMUSG00000115456.1, exon 3 of 3) lincRNA-exon (ENSMUSG00000115456.1, exon 3 of 3) 30740 ENSMUSG00000115456.1 ENSMUSG00000115456 ENSMUST00000227097 Gm35248 lincRNA Interval_111173 chr4 13853724 13854701 + 0 NA intron (ENSMUSG00000006586.15, intron 6 of 11) protein_coding-intron (ENSMUSG00000006586.15, intron 5 of 10) 102915 ENSMUSG00000006586.15 ENSMUSG00000006586 ENSMUST00000139736 Runx1t1 protein_coding Interval_90589 chr2 31299292 31299573 + 0 NA Intergenic Intergenic -14983 ENSMUSG00000055632.18 ENSMUSG00000055632 ENSMUST00000141294 Hmcn2 protein_coding Interval_83404 chr18 84932264 84932728 + 0 NA Intergenic Intergenic -2532 ENSMUSG00000034391.12 ENSMUSG00000034391 ENSMUST00000225015 Fbxo15 protein_coding Interval_120604 chr4 149648535 149649362 + 0 NA TTS (ENSMUSG00000039936.18) protein_coding-TTS (ENSMUSG00000039936.18) 6619 ENSMUSG00000098580.1 ENSMUSG00000098580 ENSMUST00000185093 Mir7023 miRNA Interval_77543 chr17 91218599 91218809 + 0 NA Intergenic Intergenic -18107 ENSMUSG00000043346.9 ENSMUSG00000043346 ENSMUST00000057074 Gm6741 processed_pseudogene Interval_94921 chr2 101776771 101777268 + 0 NA intron (ENSMUSG00000032841.15, intron 1 of 3) protein_coding-intron (ENSMUSG00000032841.15, intron 1 of 8) 20688 ENSMUSG00000032841.15 ENSMUSG00000032841 ENSMUST00000127358 Prr5l protein_coding Interval_67654 chr16 55513988 55515602 + 0 NA Intergenic Intergenic 20064 ENSMUSG00000093292.1 ENSMUSG00000093292 ENSMUST00000175551 Mir5118 miRNA Interval_116672 chr4 116597078 116598108 + 0 NA promoter-TSS (ENSMUSG00000085408.1) processed_transcript-promoter-TSS (ENSMUSG00000085408.1) 37 ENSMUSG00000085408.1 ENSMUSG00000085408 ENSMUST00000142815 C530005A16Rik processed_transcript Interval_125074 chr5 64274467 64275495 + 0 NA promoter-TSS (ENSMUSG00000029174.18) protein_coding-promoter-TSS (ENSMUSG00000029174.18) -21756 ENSMUSG00000081143.2 ENSMUSG00000081143 ENSMUST00000064305 Gm15823 processed_pseudogene Interval_152188 chr7 130530125 130532103 + 0 NA intron (ENSMUSG00000030849.18, intron 2 of 6) protein_coding-intron (ENSMUSG00000030849.18, intron 2 of 6) -3788 ENSMUSG00000099232.1 ENSMUSG00000099232 ENSMUST00000183865 Gm27884 misc_RNA Interval_39501 chr12 88722109 88723218 + 0 NA promoter-TSS (ENSMUSG00000066392.12) protein_coding-promoter-TSS (ENSMUSG00000066392.12) 90394 ENSMUSG00000113997.1 ENSMUSG00000113997 ENSMUST00000222440 1700040E09Rik lincRNA Interval_90253 chr2 29337740 29338030 + 0 NA Intergenic Intergenic 58574 ENSMUSG00000086994.1 ENSMUSG00000086994 ENSMUST00000153600 Gm13402 antisense Interval_171437 chr9 118349366 118349919 + 0 NA Intergenic Intergenic 53660 ENSMUSG00000103968.1 ENSMUSG00000103968 ENSMUST00000193035 2610509F24Rik TEC Interval_167079 chr9 65121036 65121419 + 0 NA intron (ENSMUSG00000032816.15, intron 4 of 10) protein_coding-intron (ENSMUSG00000032816.15, intron 4 of 19) 19732 ENSMUSG00000032816.15 ENSMUSG00000032816 ENSMUST00000166273 Igdcc4 protein_coding Interval_147160 chr7 63936379 63939961 + 0 NA exon (ENSMUSG00000052040.10, exon 1 of 2) protein_coding-exon (ENSMUSG00000052040.10, exon 1 of 2) -1869 ENSMUSG00000052040.10 ENSMUSG00000052040 ENSMUST00000183907 Klf13 protein_coding Interval_228 KV575242.1 155520 155954 + 0 NA NA NA NA NA Interval_28374 chr11 75453631 75455242 + 0 NA promoter-TSS (ENSMUSG00000045374.18) protein_coding-promoter-TSS (ENSMUSG00000045374.18) 281 ENSMUSG00000045374.18 ENSMUSG00000045374 ENSMUST00000135804 Wdr81 protein_coding Interval_80242 chr18 38490411 38490653 + 0 NA Intergenic Intergenic -9229 ENSMUSG00000118112.1 ENSMUSG00000118112 ENSMUST00000236084 Gm50349 processed_pseudogene Interval_97501 chr2 137942898 137943228 + 0 NA Intergenic Intergenic -66232 ENSMUSG00000086214.1 ENSMUSG00000086214 ENSMUST00000134795 Gm14062 lincRNA Interval_111867 chr4 32120306 32121586 + 0 NA Intergenic Intergenic -28840 ENSMUSG00000083872.1 ENSMUSG00000083872 ENSMUST00000119323 Gm11928 processed_pseudogene Interval_96942 chr2 129747768 129748873 + 0 NA Intergenic Intergenic -1581 ENSMUSG00000084328.1 ENSMUSG00000084328 ENSMUST00000119389 Gm14046 processed_pseudogene Interval_39674 chr12 92012761 92013737 + 0 NA TTS (ENSMUSG00000113236.1) lincRNA-TTS (ENSMUSG00000113236.1) 2830 ENSMUSG00000113236.1 ENSMUSG00000113236 ENSMUST00000223522 Gm40548 lincRNA Interval_13508 chr10 18859796 18861033 + 0 NA Intergenic Intergenic 15394 ENSMUSG00000019851.8 ENSMUSG00000019851 ENSMUST00000019998 Perp protein_coding Interval_29635 chr11 85697066 85697352 + 0 NA intron (ENSMUSG00000059439.15, intron 1 of 4) protein_coding-intron (ENSMUSG00000059439.15, intron 23 of 24) 22535 ENSMUSG00000086199.7 ENSMUSG00000086199 ENSMUST00000146806 Bcas3os1 antisense Interval_22995 chr11 18603260 18605214 + 0 NA intron (ENSMUSG00000085806.1, intron 3 of 6) lincRNA-intron (ENSMUSG00000085806.1, intron 3 of 6) -25758 ENSMUSG00000081101.1 ENSMUSG00000081101 ENSMUST00000118819 Gm12024 processed_pseudogene Interval_24733 chr11 36364805 36365269 + 0 NA intron (ENSMUSG00000049336.16, intron 3 of 28) protein_coding-intron (ENSMUSG00000049336.16, intron 3 of 28) 86996 ENSMUSG00000086375.1 ENSMUSG00000086375 ENSMUST00000123278 Gm12127 antisense Interval_53580 chr14 59555941 59556618 + 0 NA intron (ENSMUSG00000021981.10, intron 10 of 10) protein_coding-intron (ENSMUSG00000021981.10, intron 10 of 10) 41660 ENSMUSG00000021982.14 ENSMUSG00000021982 ENSMUST00000223842 Cdadc1 protein_coding Interval_2130 chr1 36620342 36620833 + 0 NA intron (ENSMUSG00000046337.17, intron 6 of 14) protein_coding-intron (ENSMUSG00000046337.17, intron 6 of 9) 18785 ENSMUSG00000089906.1 ENSMUSG00000089906 ENSMUST00000161062 Gm6428 processed_pseudogene Interval_27346 chr11 66844527 66844845 + 0 NA Intergenic Intergenic -67295 ENSMUSG00000048070.4 ENSMUSG00000048070 ENSMUST00000123434 Pirt protein_coding Interval_157886 chr8 75234112 75234431 + 0 NA Intergenic Intergenic 20327 ENSMUSG00000034472.13 ENSMUSG00000034472 ENSMUST00000132133 Rasd2 protein_coding Interval_28616 chr11 77193525 77194844 + 0 NA Intergenic Intergenic 6635 ENSMUSG00000109010.1 ENSMUSG00000109010 ENSMUST00000207081 Gm45027 lincRNA Interval_172568 chrX 36833057 36834577 + 0 NA intron (ENSMUSG00000006423.15, intron 6 of 6) protein_coding-intron (ENSMUSG00000006423.15, intron 6 of 6) 5476 ENSMUSG00000084265.1 ENSMUSG00000084265 ENSMUST00000118985 Gm14541 processed_pseudogene Interval_134499 chr6 29147582 29148128 + 0 NA intron (ENSMUSG00000029701.15, intron 1 of 4) protein_coding-intron (ENSMUSG00000029701.15, intron 9 of 18) 2824 ENSMUSG00000095596.1 ENSMUSG00000095596 ENSMUST00000178237 Gm24303 miRNA Interval_160136 chr8 106657261 106657967 + 0 NA intron (ENSMUSG00000000303.12, intron 6 of 16) protein_coding-intron (ENSMUSG00000000303.12, intron 6 of 15) -25501 ENSMUSG00000041949.6 ENSMUSG00000041949 ENSMUST00000211979 Tango6 protein_coding Interval_57888 chr15 25010314 25010668 + 0 NA intron (ENSMUSG00000097452.2, intron 1 of 1) lincRNA-intron (ENSMUSG00000097452.2, intron 1 of 1) 7903 ENSMUSG00000097452.2 ENSMUSG00000097452 ENSMUST00000226189 Gm2824 lincRNA Interval_17660 chr10 78591352 78592287 + 0 NA exon (ENSMUSG00000032714.6, exon 1 of 8) protein_coding-exon (ENSMUSG00000032714.6, exon 1 of 8) 106 ENSMUSG00000112021.1 ENSMUSG00000112021 ENSMUST00000218641 Gm30346 TEC Interval_41496 chr12 115209336 115209924 + 0 NA Intergenic Intergenic -1039 ENSMUSG00000095589.2 ENSMUSG00000095589 ENSMUST00000103526 Ighv1-55 IG_V_gene Interval_38632 chr12 80691856 80693486 + 0 NA promoter-TSS (ENSMUSG00000066438.6) protein_coding-promoter-TSS (ENSMUSG00000066438.6) -205 ENSMUSG00000044062.7 ENSMUSG00000044062 ENSMUST00000153297 Plekhd1os antisense Interval_20498 chr10 117966577 117966866 + 0 NA Intergenic Intergenic -38217 ENSMUSG00000102896.1 ENSMUSG00000102896 ENSMUST00000193027 Gm37852 TEC Interval_48543 chr13 99998042 99999026 + 0 NA intron (ENSMUSG00000021646.9, intron 3 of 5) protein_coding-intron (ENSMUSG00000021646.9, intron 2 of 16) -23218 ENSMUSG00000021646.9 ENSMUSG00000021646 ENSMUST00000221846 Mccc2 protein_coding Interval_74312 chr17 48774847 48775054 + 0 NA Intergenic Intergenic -36204 ENSMUSG00000110276.1 ENSMUSG00000110276 ENSMUST00000209681 Gm45330 lincRNA Interval_102763 chr3 30866028 30867031 + 0 NA intron (ENSMUSG00000037661.14, intron 1 of 3) protein_coding-intron (ENSMUSG00000037661.14, intron 1 of 3) 10536 ENSMUSG00000037661.14 ENSMUSG00000037661 ENSMUST00000147697 Gpr160 protein_coding Interval_131962 chr5 141134860 141135507 + 0 NA Intergenic Intergenic 54752 ENSMUSG00000093344.1 ENSMUSG00000093344 ENSMUST00000175603 Gm26113 miRNA Interval_91790 chr2 49594031 49595225 + 0 NA Intergenic Intergenic 65753 ENSMUSG00000069495.12 ENSMUSG00000069495 ENSMUST00000152485 Epc2 protein_coding Interval_3666 chr1 60534887 60535632 + 0 NA intron (ENSMUSG00000026014.15, intron 1 of 3) protein_coding-intron (ENSMUSG00000026014.15, intron 1 of 15) -1761 ENSMUSG00000084400.1 ENSMUSG00000084400 ENSMUST00000117433 Gm11576 processed_pseudogene Interval_76427 chr17 80123939 80124681 + 0 NA Intergenic Intergenic 19373 ENSMUSG00000088276.1 ENSMUSG00000088276 ENSMUST00000157651 Gm23125 snRNA Interval_25922 chr11 52610160 52612070 + 0 NA Intergenic Intergenic -123805 ENSMUSG00000083129.1 ENSMUSG00000083129 ENSMUST00000118245 Gm12210 processed_pseudogene Interval_76960 chr17 85180834 85182338 + 0 NA intron (ENSMUSG00000071037.6, intron 3 of 10) protein_coding-intron (ENSMUSG00000071037.6, intron 3 of 10) 90980 ENSMUSG00000071037.6 ENSMUSG00000071037 ENSMUST00000234501 Camkmt protein_coding Interval_96670 chr2 127021928 127022158 + 0 NA intron (ENSMUSG00000001998.15, intron 4 of 15) protein_coding-intron (ENSMUSG00000001998.15, intron 4 of 20) 13289 ENSMUSG00000001998.15 ENSMUSG00000001998 ENSMUST00000142740 Ap4e1 protein_coding Interval_59296 chr15 50876757 50877391 + 0 NA intron (ENSMUSG00000038679.16, intron 1 of 8) protein_coding-intron (ENSMUSG00000038679.16, intron 2 of 6) 12040 ENSMUSG00000084458.1 ENSMUSG00000084458 ENSMUST00000122509 Mir1907 miRNA Interval_165903 chr9 54539296 54539599 + 0 NA exon (ENSMUSG00000046460.15, exon 2 of 4) protein_coding-exon (ENSMUSG00000046460.15, exon 2 of 4) 459 ENSMUSG00000046460.15 ENSMUSG00000046460 ENSMUST00000238614 Sh2d7 protein_coding Interval_171823 chr9 121458370 121459075 + 0 NA intron (ENSMUSG00000032536.12, intron 14 of 16) protein_coding-intron (ENSMUSG00000032536.12, intron 13 of 15) 35788 ENSMUSG00000032532.7 ENSMUSG00000032532 ENSMUST00000217581 Cck protein_coding Interval_84861 chr19 17869932 17870225 + 0 NA Intergenic Intergenic -3751 ENSMUSG00000118079.1 ENSMUSG00000118079 ENSMUST00000236692 Gm50181 lincRNA Interval_125917 chr5 75738623 75739661 + 0 NA exon (ENSMUSG00000107251.1, exon 1 of 1) TEC-exon (ENSMUSG00000107251.1, exon 1 of 1) 1260 ENSMUSG00000107251.1 ENSMUSG00000107251 ENSMUST00000201004 Gm43102 TEC Interval_10356 chr1 169927243 169927462 + 0 NA Intergenic Intergenic -2577 ENSMUSG00000070532.5 ENSMUSG00000070532 ENSMUST00000175731 Ccdc190 protein_coding Interval_58625 chr15 36656746 36658995 + 0 NA intron (ENSMUSG00000115127.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000115127.1, intron 1 of 1) -28001 ENSMUSG00000115537.1 ENSMUSG00000115537 ENSMUST00000226628 Gm6704 processed_pseudogene Interval_21267 chr10 127561319 127561534 + 0 NA intron (ENSMUSG00000040249.15, intron 42 of 88) protein_coding-intron (ENSMUSG00000040249.15, intron 42 of 88) -18218 ENSMUSG00000040249.15 ENSMUSG00000040249 ENSMUST00000118455 Lrp1 protein_coding Interval_102530 chr3 27528684 27529854 + 0 NA intron (ENSMUSG00000039286.12, intron 3 of 4) protein_coding-intron (ENSMUSG00000039286.12, intron 6 of 25) -17372 ENSMUSG00000106625.1 ENSMUSG00000106625 ENSMUST00000198723 Gm43344 TEC Interval_145935 chr7 42461481 42461891 + 0 NA Intergenic Intergenic 3683 ENSMUSG00000092301.1 ENSMUSG00000092301 ENSMUST00000080945 Gm6887 processed_pseudogene Interval_116703 chr4 116733573 116734531 + 0 NA intron (ENSMUSG00000033985.17, intron 2 of 10) protein_coding-intron (ENSMUSG00000033985.17, intron 1 of 10) 8153 ENSMUSG00000098491.1 ENSMUSG00000098491 ENSMUST00000183634 Gm27688 misc_RNA Interval_108850 chr3 132638316 132638551 + 0 NA intron (ENSMUSG00000091721.4, intron 2 of 2) protein_coding-intron (ENSMUSG00000091721.4, intron 2 of 2) 8611 ENSMUSG00000091721.4 ENSMUSG00000091721 ENSMUST00000196701 Gimd1 protein_coding Interval_126436 chr5 88570362 88570964 + 0 NA intron (ENSMUSG00000029291.11, intron 1 of 17) protein_coding-intron (ENSMUSG00000029291.11, intron 1 of 12) 16201 ENSMUSG00000070697.4 ENSMUSG00000070697 ENSMUST00000090413 Utp3 protein_coding Interval_101196 chr2 179356851 179357116 + 0 NA Intergenic Intergenic -7310 ENSMUSG00000081882.1 ENSMUSG00000081882 ENSMUST00000119749 Gm14294 processed_pseudogene Interval_140917 chr6 122739225 122740608 + 0 NA TTS (ENSMUSG00000003153.10) protein_coding-TTS (ENSMUSG00000003153.10) 32427 ENSMUSG00000012396.12 ENSMUSG00000012396 ENSMUST00000012540 Nanog protein_coding Interval_138797 chr6 91957707 91958434 + 0 NA Intergenic Intergenic -18557 ENSMUSG00000108625.1 ENSMUSG00000108625 ENSMUST00000205414 Gm44711 TEC Interval_80197 chr18 38182866 38183536 + 0 NA Intergenic Intergenic 20639 ENSMUSG00000051375.15 ENSMUSG00000051375 ENSMUST00000193828 Pcdh1 protein_coding Interval_51740 chr14 31809705 31809936 + 0 NA intron (ENSMUSG00000014496.8, intron 1 of 27) protein_coding-intron (ENSMUSG00000014496.8, intron 1 of 27) 6951 ENSMUSG00000115812.1 ENSMUSG00000115812 ENSMUST00000228722 Gm49309 transcribed_processed_pseudogene Interval_160682 chr8 111565991 111566849 + 0 NA intron (ENSMUSG00000033545.14, intron 1 of 1) protein_coding-intron (ENSMUSG00000033545.14, intron 1 of 3) 28842 ENSMUSG00000033545.14 ENSMUSG00000033545 ENSMUST00000173819 Znrf1 protein_coding Interval_18108 chr10 82666099 82667982 + 0 NA intron (ENSMUSG00000020251.13, intron 1 of 1) protein_coding-intron (ENSMUSG00000020251.13, intron 3 of 9) 3428 ENSMUSG00000020251.13 ENSMUSG00000020251 ENSMUST00000140071 Glt8d2 protein_coding Interval_104089 chr3 58520509 58520772 + 0 NA exon (ENSMUSG00000027808.8, exon 3 of 3) protein_coding-exon (ENSMUSG00000027808.8, exon 3 of 3) 5252 ENSMUSG00000027808.8 ENSMUSG00000027808 ENSMUST00000029385 Serp1 protein_coding Interval_75787 chr17 71372283 71372530 + 0 NA intron (ENSMUSG00000024054.14, intron 34 of 47) protein_coding-intron (ENSMUSG00000024054.14, intron 34 of 47) -3570 ENSMUSG00000102863.1 ENSMUSG00000102863 ENSMUST00000191623 Gm37639 TEC Interval_61534 chr15 82216739 82217460 + 0 NA Intergenic Intergenic -7159 ENSMUSG00000096883.2 ENSMUSG00000096883 ENSMUST00000229543 Shisa8 protein_coding Interval_39748 chr12 96617253 96617813 + 0 NA Intergenic Intergenic -44781 ENSMUSG00000112040.1 ENSMUSG00000112040 ENSMUST00000218365 Gm47396 lincRNA Interval_47443 chr13 84284869 84286052 + 0 NA intron (ENSMUSG00000035762.11, intron 7 of 10) protein_coding-intron (ENSMUSG00000035762.11, intron 8 of 11) -3644 ENSMUSG00000114827.1 ENSMUSG00000114827 ENSMUST00000225916 Gm46432 processed_pseudogene Interval_22964 chr11 18100539 18101082 + 0 NA intron (ENSMUSG00000085453.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000085453.1, intron 1 of 2) 4824 ENSMUSG00000085453.1 ENSMUSG00000085453 ENSMUST00000150694 Gm12018 lincRNA Interval_116560 chr4 115657098 115657878 + 0 NA Intergenic Intergenic 5099 ENSMUSG00000082043.1 ENSMUSG00000082043 ENSMUST00000119777 Gm12848 processed_pseudogene Interval_41552 chr12 116235387 116235768 + 0 NA intron (ENSMUSG00000042050.8, intron 8 of 21) protein_coding-intron (ENSMUSG00000042050.8, intron 8 of 21) 6990 ENSMUSG00000096694.1 ENSMUSG00000096694 ENSMUST00000180307 Gm23190 miRNA Interval_138505 chr6 88782120 88783698 + 0 NA intron (ENSMUSG00000033174.17, intron 3 of 7) protein_coding-intron (ENSMUSG00000033174.17, intron 3 of 7) 4542 ENSMUSG00000107719.1 ENSMUSG00000107719 ENSMUST00000204640 Gm43937 TEC Interval_92162 chr2 54937019 54938311 + 0 NA intron (ENSMUSG00000060988.12, intron 8 of 11) protein_coding-intron (ENSMUSG00000060988.12, intron 7 of 10) -66320 ENSMUSG00000089352.1 ENSMUSG00000089352 ENSMUST00000158727 Gm25489 snRNA Interval_119135 chr4 135791537 135792300 + 0 NA intron (ENSMUSG00000037139.15, intron 20 of 36) protein_coding-intron (ENSMUSG00000037139.15, intron 20 of 36) -6272 ENSMUSG00000037139.15 ENSMUSG00000037139 ENSMUST00000142177 Myom3 protein_coding Interval_108251 chr3 122991908 122992178 + 0 NA Intergenic Intergenic -3368 ENSMUSG00000105478.1 ENSMUSG00000105478 ENSMUST00000196563 Gm43285 TEC Interval_64831 chr16 16277227 16277797 + 0 NA Intergenic Intergenic 1909 ENSMUSG00000115882.1 ENSMUSG00000115882 ENSMUST00000231183 Gm5481 processed_pseudogene Interval_79575 chr18 33841311 33842472 + 0 NA intron (ENSMUSG00000024376.7, intron 13 of 23) protein_coding-intron (ENSMUSG00000024376.7, intron 13 of 23) 46727 ENSMUSG00000092819.1 ENSMUSG00000092819 ENSMUST00000175078 Gm23639 snoRNA Interval_46753 chr13 69964069 69964260 + 0 NA TTS (ENSMUSG00000113802.1) lincRNA-TTS (ENSMUSG00000113802.1) 4331 ENSMUSG00000113802.1 ENSMUSG00000113802 ENSMUST00000220972 4933416O17Rik lincRNA Interval_137345 chr6 71566753 71567034 + 0 NA intron (ENSMUSG00000053119.11, intron 2 of 2) protein_coding-intron (ENSMUSG00000053119.11, intron 3 of 5) -22779 ENSMUSG00000107406.1 ENSMUSG00000107406 ENSMUST00000205011 1700040L08Rik antisense Interval_122647 chr5 24434387 24435607 + 0 NA promoter-TSS (ENSMUSG00000028962.14) protein_coding-promoter-TSS (ENSMUSG00000028962.14) -1763 ENSMUSG00000028962.14 ENSMUSG00000028962 ENSMUST00000140722 Slc4a2 protein_coding Interval_41747 chr12 118648714 118649374 + 0 NA Intergenic Intergenic 46367 ENSMUSG00000114034.1 ENSMUSG00000114034 ENSMUST00000222831 Gm9267 processed_pseudogene Interval_120759 chr4 150500290 150500604 + 0 NA intron (ENSMUSG00000039852.17, intron 8 of 22) protein_coding-intron (ENSMUSG00000039852.17, intron 2 of 16) 68097 ENSMUSG00000085213.1 ENSMUSG00000085213 ENSMUST00000128800 Gm13091 antisense Interval_95643 chr2 113363785 113364653 + 0 NA exon (ENSMUSG00000044042.19, exon 2 of 19) protein_coding-exon (ENSMUSG00000044042.19, exon 2 of 19) -20462 ENSMUSG00000084391.1 ENSMUSG00000084391 ENSMUST00000120404 Gm13967 processed_pseudogene Interval_133191 chr5 150445390 150445987 + 0 NA intron (ENSMUSG00000056602.12, intron 46 of 60) protein_coding-intron (ENSMUSG00000056602.12, intron 46 of 60) -1094 ENSMUSG00000107262.1 ENSMUSG00000107262 ENSMUST00000201000 Gm18753 processed_pseudogene Interval_137200 chr6 69877372 69877932 + 0 NA Intergenic Intergenic 2167 ENSMUSG00000105955.1 ENSMUSG00000105955 ENSMUST00000199208 Igkv12-40 IG_V_pseudogene Interval_78385 chr18 12365574 12366178 + 0 NA promoter-TSS (ENSMUSG00000099663.1) processed_pseudogene-promoter-TSS (ENSMUSG00000099663.1) 77 ENSMUSG00000099663.1 ENSMUSG00000099663 ENSMUST00000189120 Gm29201 processed_pseudogene Interval_162274 chr8 126600932 126601595 + 0 NA Intergenic Intergenic -7277 ENSMUSG00000051495.7 ENSMUSG00000051495 ENSMUST00000054960 Irf2bp2 protein_coding Interval_160037 chr8 105955399 105955647 + 0 NA intron (ENSMUSG00000017765.17, intron 4 of 5) protein_coding-intron (ENSMUSG00000017765.17, intron 4 of 23) -3824 ENSMUSG00000099131.1 ENSMUSG00000099131 ENSMUST00000183884 Mir7074 miRNA Interval_172618 chrX 38455772 38456600 + 0 NA intron (ENSMUSG00000016534.15, intron 1 of 1) protein_coding-intron (ENSMUSG00000016534.15, intron 1 of 8) 228 ENSMUSG00000016534.15 ENSMUSG00000016534 ENSMUST00000144663 Lamp2 protein_coding Interval_118728 chr4 133409677 133410417 + 0 NA intron (ENSMUSG00000028854.9, intron 1 of 11) protein_coding-intron (ENSMUSG00000028854.9, intron 1 of 11) -6259 ENSMUSG00000028854.9 ENSMUSG00000028854 ENSMUST00000141658 Slc9a1 protein_coding Interval_15621 chr10 52360465 52360678 + 0 NA intron (ENSMUSG00000019861.15, intron 1 of 8) protein_coding-intron (ENSMUSG00000019861.15, intron 1 of 7) 1804 ENSMUSG00000097704.1 ENSMUSG00000097704 ENSMUST00000180473 Gm26741 protein_coding Interval_1412 chr1 21522239 21522446 + 0 NA intron (ENSMUSG00000028033.16, intron 2 of 11) protein_coding-intron (ENSMUSG00000028033.16, intron 3 of 13) -9286 ENSMUSG00000082935.3 ENSMUSG00000082935 ENSMUST00000119064 Gm7658 processed_pseudogene Interval_50511 chr14 14456005 14456657 + 0 NA Intergenic Intergenic -7387 ENSMUSG00000114737.1 ENSMUSG00000114737 ENSMUST00000224271 Gm8483 processed_pseudogene Interval_169433 chr9 97247254 97248199 + 0 NA Intergenic Intergenic -13626 ENSMUSG00000099444.1 ENSMUSG00000099444 ENSMUST00000187248 Gm29240 processed_pseudogene Interval_12605 chr10 3863344 3864084 + 0 NA intron (ENSMUSG00000040624.18, intron 1 of 15) protein_coding-intron (ENSMUSG00000040624.18, intron 2 of 16) 5893 ENSMUSG00000082123.1 ENSMUSG00000082123 ENSMUST00000117631 Gm16149 processed_pseudogene Interval_108164 chr3 122088119 122088753 + 0 NA TTS (ENSMUSG00000028125.14) protein_coding-TTS (ENSMUSG00000028125.14) 64183 ENSMUSG00000105351.1 ENSMUSG00000105351 ENSMUST00000198223 Gm43157 processed_pseudogene Interval_13494 chr10 18661758 18662251 + 0 NA intron (ENSMUSG00000019852.7, intron 6 of 33) protein_coding-intron (ENSMUSG00000019852.7, intron 6 of 32) -81465 ENSMUSG00000111474.1 ENSMUSG00000111474 ENSMUST00000214043 Gm32926 antisense Interval_82159 chr18 68165345 68165601 + 0 NA intron (ENSMUSG00000024544.9, intron 3 of 5) protein_coding-intron (ENSMUSG00000024544.9, intron 3 of 5) 3494 ENSMUSG00000118306.1 ENSMUSG00000118306 ENSMUST00000237336 Gm18149 processed_pseudogene Interval_13020 chr10 9400387 9401242 + 0 NA Intergenic Intergenic 44659 ENSMUSG00000112048.1 ENSMUSG00000112048 ENSMUST00000217850 Gm48750 processed_pseudogene Interval_9298 chr1 156020100 156020663 + 0 NA intron (ENSMUSG00000026466.16, intron 6 of 10) protein_coding-intron (ENSMUSG00000026466.16, intron 6 of 6) 9626 ENSMUSG00000102964.1 ENSMUSG00000102964 ENSMUST00000193532 9430034N14Rik TEC Interval_26546 chr11 58751102 58751838 + 0 NA Intergenic Intergenic -1264 ENSMUSG00000107677.2 ENSMUSG00000107677 ENSMUST00000203731 Olfr316 protein_coding Interval_40323 chr12 103631036 103631274 + 0 NA intron (ENSMUSG00000061947.10, intron 1 of 4) protein_coding-intron (ENSMUSG00000061947.10, intron 1 of 4) 266 ENSMUSG00000061947.10 ENSMUSG00000061947 ENSMUST00000121625 Serpina10 protein_coding Interval_73770 chr17 43472539 43473401 + 0 NA Intergenic Intergenic 18715 ENSMUSG00000064582.1 ENSMUSG00000064582 ENSMUST00000082648 Gm25135 snRNA Interval_14300 chr10 30651161 30651569 + 0 NA intron (ENSMUSG00000039697.16, intron 3 of 4) protein_coding-intron (ENSMUSG00000039697.16, intron 13 of 15) 4472 ENSMUSG00000039697.16 ENSMUSG00000039697 ENSMUST00000215725 Ncoa7 protein_coding Interval_141395 chr6 127985086 127986246 + 0 NA intron (ENSMUSG00000030352.15, intron 2 of 2) protein_coding-intron (ENSMUSG00000030352.15, intron 3 of 8) -40827 ENSMUSG00000085813.1 ENSMUSG00000085813 ENSMUST00000132657 Gm15870 antisense Interval_94295 chr2 87593468 87593929 + 0 NA Intergenic Intergenic -12558 ENSMUSG00000059205.5 ENSMUSG00000059205 ENSMUST00000216580 Olfr1130 protein_coding Interval_118061 chr4 128692723 128693417 + 0 NA intron (ENSMUSG00000028796.17, intron 1 of 1) protein_coding-intron (ENSMUSG00000028796.17, intron 1 of 14) -17094 ENSMUSG00000028796.17 ENSMUSG00000028796 ENSMUST00000134421 Phc2 protein_coding Interval_26064 chr11 53868289 53868719 + 0 NA intron (ENSMUSG00000018900.7, intron 1 of 3) protein_coding-intron (ENSMUSG00000018900.7, intron 7 of 9) 3173 ENSMUSG00000018900.7 ENSMUSG00000018900 ENSMUST00000136307 Slc22a5 protein_coding Interval_122513 chr5 23501970 23503039 + 0 NA TTS (ENSMUSG00000062604.11) protein_coding-TTS (ENSMUSG00000062604.11) -14781 ENSMUSG00000088170.1 ENSMUSG00000088170 ENSMUST00000157545 Gm25219 misc_RNA Interval_32598 chr11 109030024 109030864 + 0 NA Intergenic Intergenic 22793 ENSMUSG00000081392.1 ENSMUSG00000081392 ENSMUST00000119655 Gm11668 processed_pseudogene Interval_42814 chr13 19965246 19965734 + 0 NA Intergenic Intergenic 30314 ENSMUSG00000050243.6 ENSMUSG00000050243 ENSMUST00000091762 Gm5446 processed_pseudogene Interval_112125 chr4 34850284 34851219 + 0 NA intron (ENSMUSG00000039967.14, intron 1 of 7) protein_coding-intron (ENSMUSG00000039967.14, intron 1 of 7) 7766 ENSMUSG00000082367.1 ENSMUSG00000082367 ENSMUST00000122250 Gm12363 processed_pseudogene Interval_83569 chr18 89879222 89879751 + 0 NA Intergenic Intergenic 64826 ENSMUSG00000098126.1 ENSMUSG00000098126 ENSMUST00000182270 Gm27037 processed_pseudogene Interval_62953 chr15 98136470 98137159 + 0 NA intron (ENSMUSG00000048175.13, intron 3 of 3) protein_coding-intron (ENSMUSG00000048175.13, intron 3 of 3) 28811 ENSMUSG00000048175.13 ENSMUSG00000048175 ENSMUST00000123922 Asb8 protein_coding Interval_137400 chr6 71931034 71931239 + 0 NA promoter-TSS (ENSMUSG00000049553.11) protein_coding-promoter-TSS (ENSMUSG00000049553.11) -11292 ENSMUSG00000108305.1 ENSMUSG00000108305 ENSMUST00000206311 Gm19078 processed_pseudogene Interval_27462 chr11 67999343 67999889 + 0 NA intron (ENSMUSG00000020903.13, intron 4 of 7) protein_coding-intron (ENSMUSG00000020903.13, intron 4 of 7) 33124 ENSMUSG00000020903.13 ENSMUSG00000020903 ENSMUST00000142649 Stx8 protein_coding Interval_75692 chr17 70713638 70713999 + 0 NA intron (ENSMUSG00000003279.17, intron 4 of 9) protein_coding-intron (ENSMUSG00000003279.17, intron 9 of 14) 41764 ENSMUSG00000097282.1 ENSMUSG00000097282 ENSMUST00000181546 5031415H12Rik antisense Interval_84279 chr19 9569704 9569917 + 0 NA Intergenic Intergenic -10627 ENSMUSG00000071640.3 ENSMUSG00000071640 ENSMUST00000090527 Stxbp3-ps processed_pseudogene Interval_110492 chr3 159627112 159627339 + 0 NA Intergenic Intergenic 28007 ENSMUSG00000028174.12 ENSMUSG00000028174 ENSMUST00000029824 Rpe65 protein_coding Interval_70400 chr17 9764185 9765381 + 0 NA intron (ENSMUSG00000117264.1, intron 3 of 3) processed_transcript-intron (ENSMUSG00000117264.1, intron 3 of 3) 11083 ENSMUSG00000117264.1 ENSMUSG00000117264 ENSMUST00000233594 4930452A19Rik processed_transcript Interval_71015 chr17 17206964 17209172 + 0 NA Intergenic Intergenic -54282 ENSMUSG00000116802.1 ENSMUSG00000116802 ENSMUST00000231376 Gm5165 lincRNA Interval_43867 chr13 37734236 37735174 + 0 NA Intergenic Intergenic -17057 ENSMUSG00000114732.1 ENSMUSG00000114732 ENSMUST00000224732 Gm40918 lincRNA Interval_49310 chr13 110557042 110557235 + 0 NA Intergenic Intergenic -70858 ENSMUSG00000109853.1 ENSMUSG00000109853 ENSMUST00000211420 Gm33045 lincRNA Interval_94945 chr2 102099610 102100253 + 0 NA intron (ENSMUSG00000048058.17, intron 2 of 5) protein_coding-intron (ENSMUSG00000048058.17, intron 2 of 5) 38188 ENSMUSG00000048058.17 ENSMUSG00000048058 ENSMUST00000127888 Ldlrad3 protein_coding Interval_156894 chr8 61515546 61518119 + 0 NA promoter-TSS (ENSMUSG00000058056.16) protein_coding-promoter-TSS (ENSMUSG00000058056.16) -932 ENSMUSG00000058056.16 ENSMUSG00000058056 ENSMUST00000123523 Palld protein_coding Interval_7151 chr1 127242464 127243075 + 0 NA exon (ENSMUSG00000104039.1, exon 1 of 1) TEC-exon (ENSMUSG00000104039.1, exon 1 of 1) 678 ENSMUSG00000104039.1 ENSMUSG00000104039 ENSMUST00000191635 Gm37772 TEC Interval_150609 chr7 112785909 112786337 + 0 NA intron (ENSMUSG00000055320.18, intron 2 of 13) protein_coding-intron (ENSMUSG00000055320.18, intron 2 of 13) 72172 ENSMUSG00000106046.1 ENSMUSG00000106046 ENSMUST00000199696 Gm44462 miRNA Interval_74004 chr17 45978335 45979968 + 0 NA Intergenic Intergenic 17292 ENSMUSG00000117040.1 ENSMUSG00000117040 ENSMUST00000233512 Gm49805 lincRNA Interval_106780 chr3 100727157 100727415 + 0 NA Intergenic Intergenic 11427 ENSMUSG00000087759.1 ENSMUSG00000087759 ENSMUST00000157134 Gm23465 misc_RNA Interval_1100 chr1 15685373 15685561 + 0 NA TTS (ENSMUSG00000088829.1) snoRNA-TTS (ENSMUSG00000088829.1) 579 ENSMUSG00000088829.1 ENSMUSG00000088829 ENSMUST00000158204 Gm25227 snoRNA Interval_114963 chr4 87732457 87732682 + 0 NA Intergenic Intergenic 73754 ENSMUSG00000028496.17 ENSMUSG00000028496 ENSMUST00000142454 Mllt3 protein_coding Interval_59024 chr15 41799807 41800247 + 0 NA intron (ENSMUSG00000022307.16, intron 2 of 8) protein_coding-intron (ENSMUSG00000022307.16, intron 2 of 14) -11116 ENSMUSG00000097232.1 ENSMUSG00000097232 ENSMUST00000180418 Gm26854 antisense Interval_1078 chr1 15172754 15173029 + 0 NA Intergenic Intergenic 96906 ENSMUSG00000073737.3 ENSMUSG00000073737 ENSMUST00000086739 Gm10566 processed_pseudogene Interval_155095 chr8 26443060 26443337 + 0 NA Intergenic Intergenic 4369 ENSMUSG00000110383.1 ENSMUSG00000110383 ENSMUST00000210430 Gm45580 lincRNA Interval_149244 chr7 96631716 96632709 + 0 NA intron (ENSMUSG00000048078.16, intron 5 of 32) protein_coding-intron (ENSMUSG00000048078.16, intron 6 of 32) -3143 ENSMUSG00000085792.2 ENSMUSG00000085792 ENSMUST00000155217 Gm15414 antisense Interval_19666 chr10 107528008 107529143 + 0 NA intron (ENSMUSG00000035916.8, intron 39 of 44) protein_coding-intron (ENSMUSG00000035916.8, intron 39 of 44) -33838 ENSMUSG00000035923.4 ENSMUSG00000035923 ENSMUST00000044210 Myf6 protein_coding Interval_150724 chr7 113843079 113843393 + 0 NA intron (ENSMUSG00000038156.16, intron 3 of 5) protein_coding-intron (ENSMUSG00000038156.16, intron 3 of 15) 77062 ENSMUSG00000038156.16 ENSMUSG00000038156 ENSMUST00000084696 Spon1 protein_coding Interval_79121 chr18 24708515 24710417 + 0 NA promoter-TSS (ENSMUSG00000034295.10) protein_coding-promoter-TSS (ENSMUSG00000034295.10) 21 ENSMUSG00000034295.10 ENSMUSG00000034295 ENSMUST00000234199 Fhod3 protein_coding Interval_113350 chr4 53713689 53714864 + 0 NA promoter-TSS (ENSMUSG00000028414.17) protein_coding-promoter-TSS (ENSMUSG00000028414.17) 113 ENSMUSG00000028414.17 ENSMUSG00000028414 ENSMUST00000061771 Fktn protein_coding Interval_104240 chr3 61532798 61533115 + 0 NA Intergenic Intergenic -70095 ENSMUSG00000098208.1 ENSMUSG00000098208 ENSMUST00000182720 Gm8349 processed_pseudogene Interval_66582 chr16 35352097 35353090 + 0 NA intron (ENSMUSG00000034473.14, intron 1 of 4) protein_coding-intron (ENSMUSG00000034473.14, intron 2 of 6) 9168 ENSMUSG00000034473.14 ENSMUSG00000034473 ENSMUST00000141087 Sec22a protein_coding Interval_18781 chr10 90709251 90710225 + 0 NA intron (ENSMUSG00000058589.14, intron 4 of 11) protein_coding-intron (ENSMUSG00000058589.14, intron 3 of 11) -19222 ENSMUSG00000112153.1 ENSMUSG00000112153 ENSMUST00000218673 Gm47591 sense_intronic Interval_50592 chr14 16249015 16249965 + 0 NA promoter-TSS (ENSMUSG00000021786.13) protein_coding-promoter-TSS (ENSMUSG00000021786.13) 6139 ENSMUSG00000114907.1 ENSMUSG00000114907 ENSMUST00000225889 Gm47794 antisense Interval_1481 chr1 23970376 23972299 + 0 NA Intergenic Intergenic -34170 ENSMUSG00000102495.1 ENSMUSG00000102495 ENSMUST00000195143 Gm26524 TEC Interval_30086 chr11 89077790 89078335 + 0 NA intron (ENSMUSG00000072553.10, intron 1 of 2) protein_coding-intron (ENSMUSG00000072553.10, intron 2 of 3) 3053 ENSMUSG00000072553.10 ENSMUSG00000072553 ENSMUST00000127186 Gm525 protein_coding Interval_44470 chr13 45074983 45075315 + 0 NA Intergenic Intergenic -3543 ENSMUSG00000047061.6 ENSMUSG00000047061 ENSMUST00000054395 Gm9817 TEC Interval_7088 chr1 125646493 125647410 + 0 NA Intergenic Intergenic 21665 ENSMUSG00000101015.1 ENSMUSG00000101015 ENSMUST00000191239 Gm18444 processed_pseudogene Interval_81950 chr18 66236265 66236987 + 0 NA intron (ENSMUSG00000046318.16, intron 1 of 9) protein_coding-intron (ENSMUSG00000046318.16, intron 2 of 11) -17293 ENSMUSG00000076147.1 ENSMUSG00000076147 ENSMUST00000102193 Mir694 miRNA Interval_68362 chr16 74225536 74225756 + 0 NA intron (ENSMUSG00000052516.19, intron 2 of 21) protein_coding-intron (ENSMUSG00000052516.19, intron 2 of 25) -23247 ENSMUSG00000116824.1 ENSMUSG00000116824 ENSMUST00000231784 Gm18021 processed_pseudogene Interval_60129 chr15 65987032 65988005 + 0 NA exon (ENSMUSG00000056258.9, exon 15 of 15) protein_coding-exon (ENSMUSG00000056258.9, exon 15 of 15) -10714 ENSMUSG00000072511.3 ENSMUSG00000072511 ENSMUST00000100584 Hhla1 protein_coding Interval_128276 chr5 112235759 112236259 + 0 NA Intergenic Intergenic -7267 ENSMUSG00000099010.1 ENSMUSG00000099010 ENSMUST00000183754 Gm27357 misc_RNA Interval_14400 chr10 32953849 32954416 + 0 NA Intergenic Intergenic -14447 ENSMUSG00000112469.1 ENSMUSG00000112469 ENSMUST00000218959 Gm47823 lincRNA Interval_10969 chr1 177681529 177681873 + 0 NA Intergenic Intergenic -38758 ENSMUSG00000101746.1 ENSMUSG00000101746 ENSMUST00000189507 2310043L19Rik lincRNA Interval_86516 chr19 41320377 41320732 + 0 NA intron (ENSMUSG00000025017.10, intron 8 of 8) protein_coding-intron (ENSMUSG00000025017.10, intron 8 of 16) -56574 ENSMUSG00000025016.11 ENSMUSG00000025016 ENSMUST00000237871 Tm9sf3 protein_coding Interval_133172 chr5 150313389 150313815 + 0 NA intron (ENSMUSG00000056602.12, intron 2 of 60) protein_coding-intron (ENSMUSG00000056602.12, intron 2 of 60) -14161 ENSMUSG00000106719.1 ENSMUSG00000106719 ENSMUST00000201397 Gm42556 antisense Interval_152803 chr7 137840647 137841023 + 0 NA Intergenic Intergenic 106569 ENSMUSG00000110090.1 ENSMUSG00000110090 ENSMUST00000209434 Gm45682 lincRNA Interval_10563 chr1 171893522 171894168 + 0 NA Intergenic Intergenic -1819 ENSMUSG00000073492.2 ENSMUSG00000073492 ENSMUST00000097466 Gm10521 protein_coding Interval_53570 chr14 59414209 59415166 + 0 NA promoter-TSS (ENSMUSG00000089643.2) processed_pseudogene-promoter-TSS (ENSMUSG00000089643.2) -123 ENSMUSG00000089643.2 ENSMUSG00000089643 ENSMUST00000161959 Gm16301 processed_pseudogene Interval_88693 chr2 9814270 9814778 + 0 NA Intergenic Intergenic 60875 ENSMUSG00000015619.10 ENSMUSG00000015619 ENSMUST00000142305 Gata3 protein_coding Interval_147843 chr7 74105505 74105880 + 0 NA Intergenic Intergenic -61954 ENSMUSG00000108725.1 ENSMUSG00000108725 ENSMUST00000205302 Gm45004 lincRNA Interval_107177 chr3 104358576 104359707 + 0 NA intron (ENSMUSG00000022187.2, intron 1 of 1) lincRNA-intron (ENSMUSG00000022187.2, intron 1 of 1) 7472 ENSMUSG00000022187.2 ENSMUSG00000022187 ENSMUST00000056145 Gm5546 lincRNA Interval_115177 chr4 93406632 93407188 + 0 NA Intergenic Intergenic -71399 ENSMUSG00000054000.5 ENSMUSG00000054000 ENSMUST00000066774 Tusc1 protein_coding Interval_14102 chr10 27132454 27133616 + 0 NA intron (ENSMUSG00000019899.17, intron 34 of 64) protein_coding-intron (ENSMUSG00000019899.17, intron 34 of 64) 79219 ENSMUSG00000019899.17 ENSMUSG00000019899 ENSMUST00000187535 Lama2 protein_coding Interval_37677 chr12 71040330 71042049 + 0 NA intron (ENSMUSG00000048118.17, intron 7 of 9) protein_coding-intron (ENSMUSG00000048118.17, intron 8 of 23) -7152 ENSMUSG00000048118.17 ENSMUSG00000048118 ENSMUST00000135709 Arid4a protein_coding Interval_96579 chr2 125872929 125873193 + 0 NA intron (ENSMUSG00000027207.15, intron 2 of 6) protein_coding-intron (ENSMUSG00000027207.15, intron 1 of 9) 6818 ENSMUSG00000027207.15 ENSMUSG00000027207 ENSMUST00000110454 Galk2 protein_coding Interval_99253 chr2 158385909 158386708 + 0 NA TTS (ENSMUSG00000044349.16) protein_coding-TTS (ENSMUSG00000044349.16) 6774 ENSMUSG00000064585.1 ENSMUSG00000064585 ENSMUST00000082651 Gm25129 snoRNA Interval_167847 chr9 73049742 73050267 + 0 NA intron (ENSMUSG00000032202.11, intron 1 of 3) protein_coding-intron (ENSMUSG00000032202.11, intron 1 of 5) 5020 ENSMUSG00000032202.11 ENSMUSG00000032202 ENSMUST00000184032 Rab27a protein_coding Interval_134210 chr6 23028468 23028693 + 0 NA intron (ENSMUSG00000068748.7, intron 18 of 29) protein_coding-intron (ENSMUSG00000068748.7, intron 18 of 29) 104336 ENSMUSG00000029695.13 ENSMUSG00000029695 ENSMUST00000152280 Aass protein_coding Interval_25970 chr11 53246294 53246609 + 0 NA Intergenic Intergenic 45767 ENSMUSG00000058073.4 ENSMUSG00000058073 ENSMUST00000117979 Gm11189 processed_pseudogene Interval_121376 chr4 155344626 155346397 + 0 NA promoter-TSS (ENSMUSG00000029053.16) protein_coding-promoter-TSS (ENSMUSG00000029053.16) -771 ENSMUSG00000029053.16 ENSMUSG00000029053 ENSMUST00000105624 Prkcz protein_coding Interval_140778 chr6 121245284 121246272 + 0 NA promoter-TSS (ENSMUSG00000030107.10) protein_coding-promoter-TSS (ENSMUSG00000030107.10) -15631 ENSMUSG00000030107.10 ENSMUSG00000030107 ENSMUST00000204710 Usp18 protein_coding Interval_123334 chr5 31526422 31527649 + 0 NA promoter-TSS (ENSMUSG00000053134.13) protein_coding-promoter-TSS (ENSMUSG00000053134.13) 23 ENSMUSG00000029141.16 ENSMUSG00000029141 ENSMUST00000202575 Slc4a1ap protein_coding Interval_55848 chr14 101463095 101463348 + 0 NA promoter-TSS (ENSMUSG00000033083.16) protein_coding-promoter-TSS (ENSMUSG00000033083.16) 109793 ENSMUSG00000115319.1 ENSMUSG00000115319 ENSMUST00000228293 Gm34417 processed_pseudogene Interval_34182 chr11 121145659 121146681 + 0 NA promoter-TSS (ENSMUSG00000039329.8) protein_coding-promoter-TSS (ENSMUSG00000039329.8) 13 ENSMUSG00000039329.8 ENSMUSG00000039329 ENSMUST00000155694 Tex19.1 protein_coding Interval_140508 chr6 119019545 119020353 + 0 NA intron (ENSMUSG00000051331.16, intron 3 of 3) protein_coding-intron (ENSMUSG00000051331.16, intron 3 of 46) -172407 ENSMUSG00000041477.14 ENSMUSG00000041477 ENSMUST00000127059 Dcp1b protein_coding Interval_43277 chr13 28617694 28617915 + 0 NA intron (ENSMUSG00000085936.7, intron 5 of 7) processed_transcript-intron (ENSMUSG00000085936.7, intron 4 of 5) 93069 ENSMUSG00000099158.1 ENSMUSG00000099158 ENSMUST00000184136 Mir6368 miRNA Interval_7211 chr1 127826937 127827667 + 0 NA intron (ENSMUSG00000051590.10, intron 10 of 13) protein_coding-intron (ENSMUSG00000051590.10, intron 6 of 9) 13018 ENSMUSG00000051590.10 ENSMUSG00000051590 ENSMUST00000061512 Map3k19 protein_coding Interval_50077 chr14 7839913 7840558 + 0 NA intron (ENSMUSG00000025278.9, intron 1 of 45) protein_coding-intron (ENSMUSG00000025278.9, intron 1 of 45) 39027 ENSMUSG00000049460.7 ENSMUSG00000049460 ENSMUST00000057361 Gm8396 processed_pseudogene Interval_22136 chr11 6555649 6555953 + 0 NA intron (ENSMUSG00000000378.15, intron 1 of 3) protein_coding-intron (ENSMUSG00000000378.15, intron 1 of 9) 3702 ENSMUSG00000084231.1 ENSMUSG00000084231 ENSMUST00000118772 Gm11975 processed_pseudogene Interval_17394 chr10 76330186 76330493 + 0 NA intron (ENSMUSG00000020231.15, intron 1 of 14) protein_coding-intron (ENSMUSG00000020231.15, intron 1 of 37) 14893 ENSMUSG00000020231.15 ENSMUSG00000020231 ENSMUST00000162766 Dip2a protein_coding Interval_39020 chr12 84516746 84517255 + 0 NA intron (ENSMUSG00000085793.2, intron 4 of 4) protein_coding-intron (ENSMUSG00000085793.2, intron 5 of 5) -13044 ENSMUSG00000085793.2 ENSMUSG00000085793 ENSMUST00000222741 Lin52 protein_coding Interval_84118 chr19 7310445 7311492 + 0 NA intron (ENSMUSG00000024969.15, intron 1 of 7) protein_coding-intron (ENSMUSG00000024969.15, intron 1 of 17) 13310 ENSMUSG00000091558.1 ENSMUSG00000091558 ENSMUST00000166590 Gm17227 antisense Interval_88550 chr2 6059379 6061039 + 0 NA Intergenic Intergenic 9782 ENSMUSG00000043241.14 ENSMUSG00000043241 ENSMUST00000144901 Upf2 protein_coding Interval_8438 chr1 139379005 139379897 + 0 NA promoter-TSS (ENSMUSG00000103844.1) lincRNA-promoter-TSS (ENSMUSG00000103844.1) -1 ENSMUSG00000103844.1 ENSMUSG00000103844 ENSMUST00000192824 4933436E23Rik lincRNA Interval_3840 chr1 63477302 63477532 + 0 NA intron (ENSMUSG00000025964.15, intron 1 of 9) protein_coding-intron (ENSMUSG00000025964.15, intron 2 of 25) 6798 ENSMUSG00000025964.15 ENSMUSG00000025964 ENSMUST00000141545 Adam23 protein_coding Interval_79990 chr18 36517080 36517464 + 0 NA Intergenic Intergenic -1905 ENSMUSG00000024486.6 ENSMUSG00000024486 ENSMUST00000236520 Hbegf protein_coding Interval_171337 chr9 116500940 116502131 + 0 NA Intergenic Intergenic 170367 ENSMUSG00000110752.1 ENSMUSG00000110752 ENSMUST00000217456 D730003K21Rik lincRNA Interval_13874 chr10 24131471 24133528 + 0 NA promoter-TSS (ENSMUSG00000085451.2) lincRNA-promoter-TSS (ENSMUSG00000085451.2) -19 ENSMUSG00000085451.2 ENSMUSG00000085451 ENSMUST00000125161 Gm40614 lincRNA Interval_86579 chr19 41847142 41848656 + 0 NA exon (ENSMUSG00000047604.3, exon 1 of 1) protein_coding-exon (ENSMUSG00000047604.3, exon 1 of 1) 233 ENSMUSG00000047604.3 ENSMUSG00000047604 ENSMUST00000059231 Frat2 protein_coding Interval_167536 chr9 70300910 70302692 + 0 NA exon (ENSMUSG00000032220.10, exon 4 of 4) protein_coding-exon (ENSMUSG00000032220.10, exon 4 of 4) 94451 ENSMUSG00000032220.10 ENSMUSG00000032220 ENSMUST00000034745 Myo1e protein_coding Interval_149286 chr7 96940315 96940759 + 0 NA intron (ENSMUSG00000085560.2, intron 3 of 3) processed_transcript-intron (ENSMUSG00000085560.2, intron 2 of 3) 9603 ENSMUSG00000085560.2 ENSMUSG00000085560 ENSMUST00000137923 C230038L03Rik processed_transcript Interval_153511 chr7 145307735 145308992 + 0 NA exon (ENSMUSG00000031070.15, exon 3 of 3) protein_coding-exon (ENSMUSG00000031070.15, exon 3 of 3) -6472 ENSMUSG00000051207.7 ENSMUSG00000051207 ENSMUST00000062163 Mrgprd protein_coding Interval_125959 chr5 76223609 76224732 + 0 NA intron (ENSMUSG00000029238.11, intron 22 of 22) protein_coding-intron (ENSMUSG00000029238.11, intron 22 of 22) 8900 ENSMUSG00000106831.1 ENSMUSG00000106831 ENSMUST00000201768 Ube2n-ps1 processed_pseudogene Interval_101664 chr3 8701315 8702546 + 0 NA Intergenic Intergenic -22453 ENSMUSG00000088094.1 ENSMUSG00000088094 ENSMUST00000157469 Gm23670 snoRNA Interval_49245 chr13 109788752 109789188 + 0 NA intron (ENSMUSG00000021699.17, intron 6 of 15) protein_coding-intron (ENSMUSG00000021699.17, intron 5 of 14) -114839 ENSMUSG00000084651.1 ENSMUSG00000084651 ENSMUST00000122702 Mir1904 miRNA Interval_96388 chr2 122107561 122108586 + 0 NA exon (ENSMUSG00000033396.13, exon 6 of 40) protein_coding-exon (ENSMUSG00000033396.13, exon 6 of 40) 10302 ENSMUSG00000033396.13 ENSMUSG00000033396 ENSMUST00000135847 Spg11 protein_coding Interval_18311 chr10 84767960 84768470 + 0 NA intron (ENSMUSG00000020037.15, intron 1 of 3) protein_coding-intron (ENSMUSG00000020037.15, intron 1 of 17) 5977 ENSMUSG00000020037.15 ENSMUSG00000020037 ENSMUST00000095388 Rfx4 protein_coding Interval_112575 chr4 43341219 43341983 + 0 NA intron (ENSMUSG00000028457.18, intron 13 of 28) protein_coding-intron (ENSMUSG00000028457.18, intron 13 of 14) -73095 ENSMUSG00000035969.15 ENSMUSG00000035969 ENSMUST00000123447 Rusc2 protein_coding Interval_30139 chr11 89627094 89627446 + 0 NA intron (ENSMUSG00000047773.15, intron 4 of 21) protein_coding-intron (ENSMUSG00000047773.15, intron 2 of 16) 213996 ENSMUSG00000047773.15 ENSMUSG00000047773 ENSMUST00000207171 Ankfn1 protein_coding Interval_7688 chr1 133053057 133054598 + 0 NA intron (ENSMUSG00000101102.1, intron 3 of 3) protein_coding-intron (ENSMUSG00000026447.17, intron 1 of 32) 14578 ENSMUSG00000101102.1 ENSMUSG00000101102 ENSMUST00000186515 Gm28609 antisense Interval_81262 chr18 56875202 56875533 + 0 NA intron (ENSMUSG00000032656.14, intron 1 of 2) protein_coding-intron (ENSMUSG00000032656.14, intron 1 of 4) 40721 ENSMUSG00000117917.1 ENSMUSG00000117917 ENSMUST00000237269 Gm18087 processed_pseudogene Interval_96943 chr2 129753600 129753848 + 0 NA Intergenic Intergenic 3823 ENSMUSG00000084328.1 ENSMUSG00000084328 ENSMUST00000119389 Gm14046 processed_pseudogene Interval_138526 chr6 88916132 88916578 + 0 NA Intergenic Intergenic -3353 ENSMUSG00000107676.1 ENSMUSG00000107676 ENSMUST00000205229 Gm44178 TEC Interval_4731 chr1 77971790 77972664 + 0 NA intron (ENSMUSG00000102052.1, intron 1 of 3) lincRNA-intron (ENSMUSG00000102052.1, intron 1 of 3) 149 ENSMUSG00000102052.1 ENSMUSG00000102052 ENSMUST00000189245 Gm28387 lincRNA Interval_162138 chr8 125455199 125456131 + 0 NA intron (ENSMUSG00000001995.9, intron 10 of 22) protein_coding-intron (ENSMUSG00000001995.9, intron 8 of 20) 114143 ENSMUSG00000001995.9 ENSMUSG00000001995 ENSMUST00000212604 Sipa1l2 protein_coding Interval_141247 chr6 126500080 126501256 + 0 NA Intergenic Intergenic 34744 ENSMUSG00000045534.4 ENSMUSG00000045534 ENSMUST00000060972 Kcna5 protein_coding Interval_111214 chr4 14905398 14906753 + 0 NA intron (ENSMUSG00000028221.3, intron 5 of 6) protein_coding-intron (ENSMUSG00000028221.3, intron 5 of 6) -24601 ENSMUSG00000086587.7 ENSMUSG00000086587 ENSMUST00000152024 Gm11837 antisense Interval_130662 chr5 129585872 129586540 + 0 NA intron (ENSMUSG00000029436.9, intron 1 of 9) protein_coding-intron (ENSMUSG00000029436.9, intron 1 of 9) -10420 ENSMUSG00000029436.9 ENSMUSG00000029436 ENSMUST00000177802 Mmp17 protein_coding Interval_154128 chr8 12928280 12929468 + 0 NA intron (ENSMUSG00000031442.21, intron 1 of 27) protein_coding-intron (ENSMUSG00000031442.21, intron 2 of 29) -2788 ENSMUSG00000031442.21 ENSMUSG00000031442 ENSMUST00000134989 Mcf2l protein_coding Interval_138874 chr6 92801410 92803707 + 0 NA intron (ENSMUSG00000030022.14, intron 21 of 29) protein_coding-intron (ENSMUSG00000030022.14, intron 31 of 39) -25074 ENSMUSG00000048636.7 ENSMUSG00000048636 ENSMUST00000133858 A730049H05Rik protein_coding Interval_125508 chr5 67799673 67800127 + 0 NA intron (ENSMUSG00000037685.15, intron 4 of 5) protein_coding-intron (ENSMUSG00000037685.15, intron 5 of 36) 8836 ENSMUSG00000037685.15 ENSMUSG00000037685 ENSMUST00000141443 Atp8a1 protein_coding Interval_110828 chr4 8788693 8789108 + 0 NA intron (ENSMUSG00000041235.12, intron 3 of 37) protein_coding-intron (ENSMUSG00000041235.12, intron 3 of 37) -66331 ENSMUSG00000041235.12 ENSMUSG00000041235 ENSMUST00000222546 Chd7 protein_coding Interval_171464 chr9 118526955 118527632 + 0 NA exon (ENSMUSG00000038708.10, exon 4 of 24) protein_coding-exon (ENSMUSG00000038708.10, exon 4 of 24) -21115 ENSMUSG00000038708.10 ENSMUSG00000038708 ENSMUST00000211826 Golga4 protein_coding Interval_154434 chr8 16700353 16701007 + 0 NA intron (ENSMUSG00000060924.15, intron 4 of 10) protein_coding-intron (ENSMUSG00000060924.15, intron 4 of 69) -50639 ENSMUSG00000110132.1 ENSMUSG00000110132 ENSMUST00000209240 Gm45394 TEC Interval_152600 chr7 135038468 135039063 + 0 NA intron (ENSMUSG00000058325.6, intron 29 of 51) protein_coding-intron (ENSMUSG00000058325.6, intron 29 of 51) 92881 ENSMUSG00000077150.1 ENSMUSG00000077150 ENSMUST00000103962 Gm24581 snoRNA Interval_32750 chr11 110337025 110338286 + 0 NA promoter-TSS (ENSMUSG00000018800.14) protein_coding-promoter-TSS (ENSMUSG00000018800.14) 61 ENSMUSG00000018800.14 ENSMUSG00000018800 ENSMUST00000148984 Abca5 protein_coding Interval_90763 chr2 32380542 32380774 + 0 NA TTS (ENSMUSG00000039205.16) protein_coding-TTS (ENSMUSG00000039205.16) 1204 ENSMUSG00000039195.4 ENSMUSG00000039195 ENSMUST00000048792 1110008P14Rik protein_coding Interval_130987 chr5 134422025 134423142 + 0 NA intron (ENSMUSG00000023079.14, intron 1 of 3) protein_coding-intron (ENSMUSG00000023079.14, intron 1 of 30) 6344 ENSMUSG00000077437.1 ENSMUSG00000077437 ENSMUST00000104249 n-R5s178 rRNA Interval_116743 chr4 117031048 117032140 + 0 NA intron (ENSMUSG00000028683.14, intron 3 of 11) protein_coding-intron (ENSMUSG00000028683.14, intron 2 of 9) 4383 ENSMUSG00000088349.1 ENSMUSG00000088349 ENSMUST00000157724 Gm22335 snRNA Interval_145605 chr7 35920713 35921212 + 0 NA Intergenic Intergenic 82702 ENSMUSG00000100387.1 ENSMUSG00000100387 ENSMUST00000187488 Gm28514 lincRNA Interval_119104 chr4 135577466 135582240 + 0 NA Intergenic Intergenic -3895 ENSMUSG00000088179.1 ENSMUSG00000088179 ENSMUST00000157554 Gm23106 snRNA Interval_116029 chr4 107099065 107099327 + 0 NA intron (ENSMUSG00000047636.3, intron 1 of 5) protein_coding-intron (ENSMUSG00000047636.3, intron 1 of 3) 1488 ENSMUSG00000047636.3 ENSMUSG00000047636 ENSMUST00000221740 Cdcp2 protein_coding Interval_60089 chr15 65217963 65218715 + 0 NA Intergenic Intergenic -17777 ENSMUSG00000115066.1 ENSMUSG00000115066 ENSMUST00000227626 Gm49242 processed_pseudogene Interval_156561 chr8 51880030 51880308 + 0 NA TTS (ENSMUSG00000109897.1) processed_pseudogene-TTS (ENSMUSG00000109897.1) 606 ENSMUSG00000109897.1 ENSMUSG00000109897 ENSMUST00000211573 Gm6458 processed_pseudogene Interval_63270 chr15 100022818 100023969 + 0 NA Intergenic Intergenic -50106 ENSMUSG00000100084.2 ENSMUSG00000100084 ENSMUST00000188271 2310068J16Rik antisense Interval_171394 chr9 117357132 117357364 + 0 NA intron (ENSMUSG00000039607.17, intron 1 of 14) protein_coding-intron (ENSMUSG00000039607.17, intron 1 of 14) -45731 ENSMUSG00000092504.1 ENSMUSG00000092504 ENSMUST00000173358 Gm20396 processed_pseudogene Interval_152636 chr7 135611796 135612003 + 0 NA intron (ENSMUSG00000041836.10, intron 1 of 19) protein_coding-intron (ENSMUSG00000041836.10, intron 2 of 20) 18511 ENSMUSG00000041836.10 ENSMUSG00000041836 ENSMUST00000211092 Ptpre protein_coding Interval_2567 chr1 40465524 40466013 + 0 NA promoter-TSS (ENSMUSG00000026070.15) protein_coding-promoter-TSS (ENSMUSG00000026070.15) -238 ENSMUSG00000026070.15 ENSMUSG00000026070 ENSMUST00000108044 Il18r1 protein_coding Interval_122068 chr5 15933897 15936132 + 0 NA exon (ENSMUSG00000040118.15, exon 1 of 39) protein_coding-exon (ENSMUSG00000040118.15, exon 1 of 39) -1608 ENSMUSG00000096936.1 ENSMUSG00000096936 ENSMUST00000180447 Gm3510 lincRNA Interval_122003 chr5 13628329 13629301 + 0 NA Intergenic Intergenic -11000 ENSMUSG00000104905.1 ENSMUSG00000104905 ENSMUST00000197524 Gm43718 TEC Interval_96676 chr2 127077131 127079892 + 0 NA intron (ENSMUSG00000001999.15, intron 1 of 4) protein_coding-intron (ENSMUSG00000001999.15, intron 1 of 7) 7846 ENSMUSG00000001999.15 ENSMUSG00000001999 ENSMUST00000142737 Blvra protein_coding Interval_131356 chr5 136686750 136687128 + 0 NA Intergenic Intergenic -10840 ENSMUSG00000005474.9 ENSMUSG00000005474 ENSMUST00000197849 Myl10 protein_coding Interval_76089 chr17 74845726 74847634 + 0 NA intron (ENSMUSG00000024078.7, intron 10 of 13) protein_coding-intron (ENSMUSG00000024078.7, intron 16 of 19) 14254 ENSMUSG00000117441.1 ENSMUSG00000117441 ENSMUST00000234097 Gm50021 antisense Interval_87803 chr19 55991035 55992339 + 0 NA Intergenic Intergenic -20842 ENSMUSG00000117833.1 ENSMUSG00000117833 ENSMUST00000236015 Gm50135 processed_pseudogene Interval_97927 chr2 145831926 145832979 + 0 NA intron (ENSMUSG00000001768.16, intron 4 of 12) protein_coding-intron (ENSMUSG00000001768.16, intron 4 of 12) -45834 ENSMUSG00000092758.1 ENSMUSG00000092758 ENSMUST00000175017 Gm25026 miRNA Interval_61050 chr15 78959520 78960349 + 0 NA exon (ENSMUSG00000033088.19, exon 6 of 24) protein_coding-exon (ENSMUSG00000033088.19, exon 6 of 24) 12015 ENSMUSG00000033088.19 ENSMUSG00000033088 ENSMUST00000129922 Triobp protein_coding Interval_171784 chr9 121101126 121101659 + 0 NA intron (ENSMUSG00000040936.15, intron 32 of 36) protein_coding-intron (ENSMUSG00000040936.15, intron 32 of 33) -140885 ENSMUSG00000040936.15 ENSMUSG00000040936 ENSMUST00000164969 Ulk4 protein_coding Interval_141672 chr6 133092059 133092954 + 0 NA exon (ENSMUSG00000107694.1, exon 1 of 1) processed_pseudogene-exon (ENSMUSG00000107694.1, exon 1 of 1) 325 ENSMUSG00000107694.1 ENSMUSG00000107694 ENSMUST00000204306 Gm8921 processed_pseudogene Interval_50076 chr14 7831878 7833928 + 0 NA intron (ENSMUSG00000025278.9, intron 1 of 45) protein_coding-intron (ENSMUSG00000025278.9, intron 1 of 45) 31695 ENSMUSG00000049460.7 ENSMUSG00000049460 ENSMUST00000057361 Gm8396 processed_pseudogene Interval_98924 chr2 156056071 156056857 + 0 NA exon (ENSMUSG00000081002.1, exon 1 of 1) processed_pseudogene-exon (ENSMUSG00000081002.1, exon 1 of 1) 336 ENSMUSG00000081002.1 ENSMUSG00000081002 ENSMUST00000120353 Gm14240 processed_pseudogene Interval_137908 chr6 83287936 83289181 + 0 NA TTS (ENSMUSG00000068323.12) protein_coding-TTS (ENSMUSG00000068323.12) 11165 ENSMUSG00000068323.12 ENSMUSG00000068323 ENSMUST00000131432 Slc4a5 protein_coding Interval_40504 chr12 105322093 105322693 + 0 NA Intergenic Intergenic -11477 ENSMUSG00000097929.9 ENSMUSG00000097929 ENSMUST00000180503 Tunar protein_coding Interval_92342 chr2 59148211 59148435 + 0 NA exon (ENSMUSG00000084250.1, exon 1 of 1) processed_pseudogene-exon (ENSMUSG00000084250.1, exon 1 of 1) 300 ENSMUSG00000084250.1 ENSMUSG00000084250 ENSMUST00000118185 Gm13550 processed_pseudogene Interval_115740 chr4 103192115 103192702 + 0 NA intron (ENSMUSG00000028521.17, intron 8 of 11) protein_coding-intron (ENSMUSG00000028521.17, intron 8 of 11) 22395 ENSMUSG00000028521.17 ENSMUSG00000028521 ENSMUST00000154845 Slc35d1 protein_coding Interval_88682 chr2 9674760 9675046 + 0 NA Intergenic Intergenic -43562 ENSMUSG00000104276.1 ENSMUSG00000104276 ENSMUST00000191950 Gm37866 TEC Interval_144178 chr7 19815228 19818031 + 0 NA promoter-TSS (ENSMUSG00000087593.1) antisense-promoter-TSS (ENSMUSG00000087593.1) 76 ENSMUSG00000087593.1 ENSMUSG00000087593 ENSMUST00000137373 Gm16174 antisense Interval_36518 chr12 48172389 48172819 + 0 NA Intergenic Intergenic -125070 ENSMUSG00000111984.1 ENSMUSG00000111984 ENSMUST00000218240 Gm46327 unprocessed_pseudogene Interval_99302 chr2 158794358 158795507 + 0 NA promoter-TSS (ENSMUSG00000027655.14) protein_coding-promoter-TSS (ENSMUSG00000027655.14) 13524 ENSMUSG00000027654.2 ENSMUSG00000027654 ENSMUST00000151801 Fam83d protein_coding Interval_160217 chr8 107194544 107195577 + 0 NA Intergenic Intergenic 29145 ENSMUSG00000031924.4 ENSMUSG00000031924 ENSMUST00000212920 Cyb5b protein_coding Interval_32919 chr11 113114543 113115271 + 0 NA intron (ENSMUSG00000087259.7, intron 1 of 3) lincRNA-intron (ENSMUSG00000087259.7, intron 1 of 2) 58170 ENSMUSG00000087259.7 ENSMUSG00000087259 ENSMUST00000150712 2610035D17Rik lincRNA Interval_76739 chr17 83766580 83766774 + 0 NA intron (ENSMUSG00000055817.18, intron 7 of 16) protein_coding-intron (ENSMUSG00000055817.18, intron 8 of 16) 37513 ENSMUSG00000055817.18 ENSMUSG00000055817 ENSMUST00000175920 Mta3 protein_coding Interval_36671 chr12 51906548 51906743 + 0 NA intron (ENSMUSG00000035181.6, intron 11 of 24) protein_coding-intron (ENSMUSG00000035181.6, intron 22 of 35) 33305 ENSMUSG00000035181.6 ENSMUSG00000035181 ENSMUST00000219277 Heatr5a protein_coding Interval_15053 chr10 42237182 42237453 + 0 NA intron (ENSMUSG00000048756.11, intron 2 of 2) protein_coding-intron (ENSMUSG00000048756.11, intron 2 of 3) 21049 ENSMUSG00000048756.11 ENSMUSG00000048756 ENSMUST00000105501 Foxo3 protein_coding Interval_101987 chr3 14511355 14511819 + 0 NA exon (ENSMUSG00000098083.1, exon 1 of 1) processed_pseudogene-exon (ENSMUSG00000098083.1, exon 1 of 1) 508 ENSMUSG00000098083.1 ENSMUSG00000098083 ENSMUST00000182082 Gm8957 processed_pseudogene Interval_127165 chr5 100760166 100760785 + 0 NA Intergenic Intergenic 32251 ENSMUSG00000035266.16 ENSMUSG00000035266 ENSMUST00000144948 Helq protein_coding Interval_63596 chr15 102250236 102250898 + 0 NA promoter-TSS (ENSMUSG00000001288.15) protein_coding-promoter-TSS (ENSMUSG00000001288.15) 2073 ENSMUSG00000001288.15 ENSMUSG00000001288 ENSMUST00000230330 Rarg protein_coding Interval_164800 chr9 41993489 41994859 + 0 NA intron (ENSMUSG00000049313.8, intron 32 of 47) protein_coding-intron (ENSMUSG00000049313.8, intron 32 of 47) -9604 ENSMUSG00000049313.8 ENSMUSG00000049313 ENSMUST00000139133 Sorl1 protein_coding Interval_93985 chr2 80514776 80515275 + 0 NA intron (ENSMUSG00000027002.13, intron 25 of 31) protein_coding-intron (ENSMUSG00000027002.13, intron 24 of 30) 10655 ENSMUSG00000027002.13 ENSMUSG00000027002 ENSMUST00000134587 Nckap1 protein_coding Interval_102997 chr3 34079987 34081895 + 0 NA promoter-TSS (ENSMUSG00000027679.13) protein_coding-promoter-TSS (ENSMUSG00000027679.13) -761 ENSMUSG00000027679.13 ENSMUSG00000027679 ENSMUST00000117223 Dnajc19 protein_coding Interval_171591 chr9 119419607 119420839 + 0 NA intron (ENSMUSG00000061393.14, intron 1 of 10) protein_coding-intron (ENSMUSG00000061393.14, intron 1 of 9) -10123 ENSMUSG00000061393.14 ENSMUSG00000061393 ENSMUST00000213431 Acvr2b protein_coding Interval_451 chr1 5491309 5491667 + 0 NA Intergenic Intergenic 87941 ENSMUSG00000102907.1 ENSMUSG00000102907 ENSMUST00000194850 Gm38264 TEC Interval_124793 chr5 54126693 54126908 + 0 NA Intergenic Intergenic 10943 ENSMUSG00000039156.19 ENSMUSG00000039156 ENSMUST00000202342 Stim2 protein_coding Interval_174478 chrX 153174885 153175316 + 0 NA Intergenic Intergenic 35113 ENSMUSG00000041658.12 ENSMUSG00000041658 ENSMUST00000144175 Rragb protein_coding Interval_162954 chr9 13698871 13700125 + 0 NA intron (ENSMUSG00000031925.17, intron 2 of 3) protein_coding-intron (ENSMUSG00000031925.17, intron 2 of 3) 27944 ENSMUSG00000111698.1 ENSMUSG00000111698 ENSMUST00000215676 Gm47105 processed_pseudogene Interval_115320 chr4 96188858 96189508 + 0 NA TTS (ENSMUSG00000082681.1) unprocessed_pseudogene-TTS (ENSMUSG00000082681.1) 1060 ENSMUSG00000082681.1 ENSMUSG00000082681 ENSMUST00000122430 Cyp2j7-ps1 unprocessed_pseudogene Interval_33490 chr11 116851923 116854165 + 0 NA promoter-TSS (ENSMUSG00000020818.16) protein_coding-promoter-TSS (ENSMUSG00000020818.16) 28 ENSMUSG00000034120.18 ENSMUSG00000034120 ENSMUST00000177429 Srsf2 protein_coding Interval_142740 chr6 145270161 145271097 + 0 NA Intergenic Intergenic 4229 ENSMUSG00000067344.7 ENSMUSG00000067344 ENSMUST00000119876 Rps25-ps1 processed_pseudogene Interval_150328 chr7 109643080 109643301 + 0 NA intron (ENSMUSG00000031024.13, intron 1 of 3) protein_coding-intron (ENSMUSG00000031024.13, intron 1 of 3) -26437 ENSMUSG00000031024.13 ENSMUSG00000031024 ENSMUST00000208734 Denn2b protein_coding Interval_129024 chr5 116822378 116822612 + 0 NA TTS (ENSMUSG00000041512.3) TEC-TTS (ENSMUSG00000041512.3) 1041 ENSMUSG00000041512.3 ENSMUSG00000041512 ENSMUST00000036821 4930569F06Rik TEC Interval_95548 chr2 112196348 112197864 + 0 NA Intergenic Intergenic 29382 ENSMUSG00000109522.1 ENSMUSG00000109522 ENSMUST00000208550 Olfr1319-ps1 unprocessed_pseudogene Interval_150372 chr7 109992395 109993098 + 0 NA Intergenic Intergenic 4668 ENSMUSG00000089306.1 ENSMUSG00000089306 ENSMUST00000158681 Gm24842 snRNA Interval_49026 chr13 107033909 107034832 + 0 NA promoter-TSS (ENSMUSG00000114893.1) lincRNA-promoter-TSS (ENSMUSG00000114893.1) 86 ENSMUSG00000114893.1 ENSMUSG00000114893 ENSMUST00000224166 Gm48684 lincRNA Interval_124554 chr5 50469826 50470301 + 0 NA intron (ENSMUSG00000105423.4, intron 10 of 10) processed_transcript-intron (ENSMUSG00000105423.4, intron 10 of 10) -47410 ENSMUSG00000106345.1 ENSMUSG00000106345 ENSMUST00000199679 Gm42459 processed_pseudogene Interval_120452 chr4 148704537 148705592 + 0 NA Intergenic Intergenic -8639 ENSMUSG00000087273.1 ENSMUSG00000087273 ENSMUST00000139895 Gm13203 lincRNA Interval_121835 chr5 8680453 8681280 + 0 NA intron (ENSMUSG00000040584.8, intron 4 of 27) protein_coding-intron (ENSMUSG00000040584.8, intron 4 of 27) 11346 ENSMUSG00000105392.1 ENSMUSG00000105392 ENSMUST00000197663 Gm42684 TEC Interval_74772 chr17 56468554 56470629 + 0 NA intron (ENSMUSG00000013236.17, intron 1 of 6) protein_coding-intron (ENSMUSG00000013236.17, intron 1 of 32) -33606 ENSMUSG00000013236.17 ENSMUSG00000013236 ENSMUST00000224193 Ptprs protein_coding Interval_67892 chr16 58749756 58750372 + 0 NA promoter-TSS (ENSMUSG00000099074.1) miRNA-promoter-TSS (ENSMUSG00000099074.1) -380 ENSMUSG00000099074.1 ENSMUSG00000099074 ENSMUST00000185196 Gm27564 miRNA Interval_1314 chr1 20431927 20433610 + 0 NA intron (ENSMUSG00000043760.16, intron 36 of 66) protein_coding-intron (ENSMUSG00000043760.16, intron 36 of 66) 12042 ENSMUSG00000090142.2 ENSMUSG00000090142 ENSMUST00000160969 Gm15795 processed_pseudogene Interval_104567 chr3 68305976 68307676 + 0 NA intron (ENSMUSG00000027777.15, intron 1 of 6) protein_coding-intron (ENSMUSG00000027777.15, intron 1 of 7) -26370 ENSMUSG00000102846.1 ENSMUSG00000102846 ENSMUST00000193165 Gm10292 processed_pseudogene Interval_113659 chr4 57318797 57319131 + 0 NA Intergenic Intergenic -18589 ENSMUSG00000038764.14 ENSMUSG00000038764 ENSMUST00000151964 Ptpn3 protein_coding Interval_52022 chr14 34670140 34670620 + 0 NA Intergenic Intergenic -2041 ENSMUSG00000115451.1 ENSMUSG00000115451 ENSMUST00000227707 Gm49025 lincRNA Interval_35349 chr12 20928932 20929430 + 0 NA Intergenic Intergenic -7919 ENSMUSG00000069755.5 ENSMUSG00000069755 ENSMUST00000208744 Zfp125 transcribed_unprocessed_pseudogene Interval_80045 chr18 36939017 36941495 + 0 NA exon (ENSMUSG00000104148.5, exon 1 of 4) protein_coding-exon (ENSMUSG00000104148.5, exon 1 of 4) 1032 ENSMUSG00000104148.5 ENSMUSG00000104148 ENSMUST00000195590 Pcdha2 protein_coding Interval_99710 chr2 164430078 164430983 + 0 NA intron (ENSMUSG00000017009.3, intron 2 of 4) protein_coding-intron (ENSMUSG00000017009.3, intron 2 of 4) 13357 ENSMUSG00000017009.3 ENSMUSG00000017009 ENSMUST00000142909 Sdc4 protein_coding Interval_42333 chr13 12167703 12167946 + 0 NA Intergenic Intergenic 4326 ENSMUSG00000113848.1 ENSMUSG00000113848 ENSMUST00000221057 Gm16419 processed_pseudogene Interval_121666 chr5 4825897 4826081 + 0 NA TTS (ENSMUSG00000105062.1) sense_intronic-TTS (ENSMUSG00000105062.1) 2104 ENSMUSG00000105062.1 ENSMUSG00000105062 ENSMUST00000199713 Gm43113 sense_intronic Interval_150324 chr7 109602378 109603144 + 0 NA promoter-TSS (ENSMUSG00000031024.13) protein_coding-promoter-TSS (ENSMUSG00000031024.13) 13992 ENSMUSG00000031024.13 ENSMUSG00000031024 ENSMUST00000208734 Denn2b protein_coding Interval_32415 chr11 107416633 107417811 + 0 NA intron (ENSMUSG00000040430.18, intron 1 of 9) protein_coding-intron (ENSMUSG00000040430.18, intron 1 of 9) 6832 ENSMUSG00000085245.1 ENSMUSG00000085245 ENSMUST00000139941 Gm11713 antisense Interval_141073 chr6 124813217 124814702 + 0 NA promoter-TSS (ENSMUSG00000023456.16) protein_coding-promoter-TSS (ENSMUSG00000023456.16) 337 ENSMUSG00000023456.16 ENSMUSG00000023456 ENSMUST00000204602 Tpi1 protein_coding Interval_165373 chr9 46830560 46831418 + 0 NA exon (ENSMUSG00000111236.1, exon 1 of 5) lincRNA-exon (ENSMUSG00000111236.1, exon 1 of 5) 650 ENSMUSG00000111236.1 ENSMUSG00000111236 ENSMUST00000215504 Gm31614 lincRNA Interval_6988 chr1 121577131 121578024 + 0 NA Intergenic Intergenic -18362 ENSMUSG00000001674.11 ENSMUSG00000001674 ENSMUST00000131471 Ddx18 protein_coding Interval_17689 chr10 79540324 79541111 + 0 NA TTS (ENSMUSG00000042570.14) protein_coding-TTS (ENSMUSG00000042570.14) 1243 ENSMUSG00000042570.14 ENSMUSG00000042570 ENSMUST00000167689 Mier2 protein_coding Interval_155214 chr8 27658108 27659403 + 0 NA Intergenic Intergenic 42938 ENSMUSG00000104743.1 ENSMUSG00000104743 ENSMUST00000104868 Gm44493 miRNA Interval_41493 chr12 115105437 115105716 + 0 NA Intergenic Intergenic 14643 ENSMUSG00000094198.2 ENSMUSG00000094198 ENSMUST00000103521 Ighv1-50 IG_V_gene Interval_162786 chr9 9101230 9102123 + 0 NA intron (ENSMUSG00000050730.17, intron 4 of 5) protein_coding-intron (ENSMUSG00000050730.17, intron 4 of 22) 129885 ENSMUSG00000078117.2 ENSMUSG00000078117 ENSMUST00000104915 Gm16485 TEC Interval_54752 chr14 74741533 74741843 + 0 NA intron (ENSMUSG00000021996.16, intron 4 of 4) protein_coding-intron (ENSMUSG00000021996.16, intron 4 of 8) 9369 ENSMUSG00000021996.16 ENSMUSG00000021996 ENSMUST00000176726 Esd protein_coding Interval_158196 chr8 79715344 79715581 + 0 NA intron (ENSMUSG00000036977.8, intron 2 of 4) protein_coding-intron (ENSMUSG00000036977.8, intron 2 of 4) 3611 ENSMUSG00000036977.8 ENSMUSG00000036977 ENSMUST00000210485 Anapc10 protein_coding Interval_64474 chr16 11778472 11779330 + 0 NA intron (ENSMUSG00000115936.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000115936.1, intron 1 of 2) 472 ENSMUSG00000115936.1 ENSMUSG00000115936 ENSMUST00000229695 4833415N18Rik lincRNA Interval_37831 chr12 72341116 72341856 + 0 NA intron (ENSMUSG00000021087.18, intron 1 of 8) protein_coding-intron (ENSMUSG00000021087.18, intron 1 of 8) -100549 ENSMUSG00000021090.16 ENSMUSG00000021090 ENSMUST00000221282 Lrrc9 protein_coding Interval_85084 chr19 22528460 22528830 + 0 NA intron (ENSMUSG00000052387.16, intron 1 of 24) protein_coding-intron (ENSMUSG00000052387.16, intron 1 of 26) -79780 ENSMUSG00000098739.1 ENSMUSG00000098739 ENSMUST00000185015 Gm27151 antisense Interval_25096 chr11 43855194 43855799 + 0 NA intron (ENSMUSG00000050541.14, intron 1 of 4) protein_coding-intron (ENSMUSG00000050541.14, intron 1 of 4) -19164 ENSMUSG00000050541.14 ENSMUSG00000050541 ENSMUST00000139906 Adra1b protein_coding Interval_113891 chr4 59625753 59626993 + 0 NA exon (ENSMUSG00000045071.14, exon 1 of 3) protein_coding-exon (ENSMUSG00000045071.14, exon 1 of 3) 32063 ENSMUSG00000028383.17 ENSMUSG00000028383 ENSMUST00000128792 Hsdl2 protein_coding Interval_104920 chr3 79016994 79017268 + 0 NA Intergenic Intergenic 37209 ENSMUSG00000077487.1 ENSMUSG00000077487 ENSMUST00000104299 Gm23440 snoRNA Interval_128283 chr5 112268996 112269645 + 0 NA exon (ENSMUSG00000029343.17, exon 6 of 6) protein_coding-exon (ENSMUSG00000029343.17, exon 6 of 6) -7387 ENSMUSG00000029344.15 ENSMUSG00000029344 ENSMUST00000139482 Tpst2 protein_coding Interval_81454 chr18 60848406 60849523 + 0 NA promoter-TSS (ENSMUSG00000024613.16) protein_coding-promoter-TSS (ENSMUSG00000024613.16) -518 ENSMUSG00000024613.16 ENSMUSG00000024613 ENSMUST00000177343 Tcof1 protein_coding Interval_161565 chr8 121242227 121242585 + 0 NA intron (ENSMUSG00000092329.1, intron 1 of 15) protein_coding-intron (ENSMUSG00000092329.1, intron 1 of 15) -38804 ENSMUSG00000097097.2 ENSMUSG00000097097 ENSMUST00000212635 5033426O07Rik lincRNA Interval_37546 chr12 69757766 69759101 + 0 NA intron (ENSMUSG00000020990.5, intron 4 of 9) protein_coding-intron (ENSMUSG00000020990.5, intron 4 of 9) 5511 ENSMUSG00000076065.1 ENSMUSG00000076065 ENSMUST00000102111 Mir681 miRNA Interval_115205 chr4 94433284 94434330 + 0 NA TTS (ENSMUSG00000088295.1) misc_RNA-TTS (ENSMUSG00000088295.1) 677 ENSMUSG00000088295.1 ENSMUSG00000088295 ENSMUST00000157670 Gm26410 misc_RNA Interval_9813 chr1 162609624 162610100 + 0 NA Intergenic Intergenic 19205 ENSMUSG00000091743.2 ENSMUSG00000091743 ENSMUST00000066241 Gm5705 processed_pseudogene Interval_71011 chr17 17194375 17197527 + 0 NA Intergenic Intergenic -66399 ENSMUSG00000116802.1 ENSMUSG00000116802 ENSMUST00000231376 Gm5165 lincRNA Interval_65028 chr16 18569798 18570153 + 0 NA Intergenic Intergenic 18833 ENSMUSG00000009097.10 ENSMUSG00000009097 ENSMUST00000232589 Tbx1 protein_coding Interval_57128 chr15 6765657 6766170 + 0 NA TTS (ENSMUSG00000050310.9) protein_coding-TTS (ENSMUSG00000050310.9) 57534 ENSMUSG00000050310.9 ENSMUSG00000050310 ENSMUST00000061656 Rictor protein_coding Interval_103122 chr3 35692868 35694410 + 0 NA Intergenic Intergenic -41734 ENSMUSG00000064834.1 ENSMUSG00000064834 ENSMUST00000082900 Gm25696 snRNA Interval_61090 chr15 79177026 79177686 + 0 NA intron (ENSMUSG00000075555.12, intron 1 of 2) processed_transcript-intron (ENSMUSG00000075555.12, intron 1 of 4) 4636 ENSMUSG00000075555.12 ENSMUSG00000075555 ENSMUST00000148028 Gm10863 processed_transcript Interval_64543 chr16 13191410 13191628 + 0 NA Intergenic Intergenic 59128 ENSMUSG00000022545.13 ENSMUSG00000022545 ENSMUST00000156393 Ercc4 protein_coding Interval_167428 chr9 69147135 69147589 + 0 NA intron (ENSMUSG00000032238.17, intron 1 of 5) protein_coding-intron (ENSMUSG00000032238.17, intron 1 of 10) 216885 ENSMUSG00000086648.1 ENSMUSG00000086648 ENSMUST00000152570 Gm15511 antisense Interval_47294 chr13 80821854 80822656 + 0 NA Intergenic Intergenic 63269 ENSMUSG00000089827.1 ENSMUSG00000089827 ENSMUST00000161006 1700023H06Rik processed_transcript Interval_169591 chr9 99329792 99330060 + 0 NA intron (ENSMUSG00000037681.13, intron 6 of 22) protein_coding-intron (ENSMUSG00000037681.13, intron 6 of 22) 7100 ENSMUSG00000103452.1 ENSMUSG00000103452 ENSMUST00000191694 1700008A23Rik TEC Interval_135301 chr6 38167697 38168182 + 0 NA intron (ENSMUSG00000063455.16, intron 10 of 19) protein_coding-intron (ENSMUSG00000063455.16, intron 10 of 19) 49556 ENSMUSG00000087924.1 ENSMUSG00000087924 ENSMUST00000157299 Gm23231 snRNA Interval_111009 chr4 11184112 11184340 + 0 NA Intergenic Intergenic -7128 ENSMUSG00000028212.16 ENSMUSG00000028212 ENSMUST00000149075 Ccne2 protein_coding Interval_5490 chr1 89196219 89196491 + 0 NA Intergenic Intergenic 60626 ENSMUSG00000102083.1 ENSMUSG00000102083 ENSMUST00000191231 Gm5259 processed_pseudogene Interval_35701 chr12 28344763 28345729 + 0 NA Intergenic Intergenic -5017 ENSMUSG00000077792.1 ENSMUSG00000077792 ENSMUST00000104604 Gm25564 snoRNA Interval_103600 chr3 51086547 51087250 + 0 NA Intergenic Intergenic -12042 ENSMUSG00000102067.1 ENSMUSG00000102067 ENSMUST00000189687 Gm29230 lincRNA Interval_101155 chr2 178593673 178595044 + 0 NA Intergenic Intergenic 133728 ENSMUSG00000039155.15 ENSMUSG00000039155 ENSMUST00000176869 Cdh26 protein_coding Interval_12129 chr1 189923993 189924623 + 0 NA Intergenic Intergenic -2055 ENSMUSG00000026603.13 ENSMUSG00000026603 ENSMUST00000144452 Smyd2 protein_coding Interval_99153 chr2 157537057 157537397 + 0 NA Intergenic Intergenic -8242 ENSMUSG00000082329.1 ENSMUSG00000082329 ENSMUST00000121060 Gm14287 processed_pseudogene Interval_87047 chr19 45790380 45791215 + 0 NA Intergenic Intergenic 12777 ENSMUSG00000025221.16 ENSMUSG00000025221 ENSMUST00000159446 Kcnip2 protein_coding Interval_149039 chr7 92614437 92614915 + 0 NA intron (ENSMUSG00000041343.19, intron 4 of 6) protein_coding-intron (ENSMUSG00000041343.19, intron 5 of 12) 21584 ENSMUSG00000041343.19 ENSMUSG00000041343 ENSMUST00000207151 Ankrd42 protein_coding Interval_171561 chr9 119213266 119214524 + 0 NA intron (ENSMUSG00000070280.13, intron 1 of 10) protein_coding-intron (ENSMUSG00000070280.13, intron 1 of 10) -4797 ENSMUSG00000074028.4 ENSMUSG00000074028 ENSMUST00000084797 Slc22a13 protein_coding Interval_48570 chr13 100395778 100396131 + 0 NA Intergenic Intergenic 3222 ENSMUSG00000112978.1 ENSMUSG00000112978 ENSMUST00000220831 Gm18601 processed_pseudogene Interval_114754 chr4 84769933 84771058 + 0 NA Intergenic Intergenic 29020 ENSMUSG00000086413.1 ENSMUSG00000086413 ENSMUST00000141637 Gm12415 lincRNA Interval_95454 chr2 109693112 109695085 + 0 NA promoter-TSS (ENSMUSG00000048482.14) protein_coding-promoter-TSS (ENSMUSG00000048482.14) 1071 ENSMUSG00000048482.14 ENSMUSG00000048482 ENSMUST00000111042 Bdnf protein_coding Interval_152535 chr7 133967735 133968068 + 0 NA exon (ENSMUSG00000054555.11, exon 9 of 23) protein_coding-exon (ENSMUSG00000054555.11, exon 9 of 23) -28160 ENSMUSG00000093032.1 ENSMUSG00000093032 ENSMUST00000175291 Gm23631 miRNA Interval_172548 chrX 36555169 36555503 + 0 NA Intergenic Intergenic -42870 ENSMUSG00000006373.10 ENSMUSG00000006373 ENSMUST00000073339 Pgrmc1 protein_coding Interval_42424 chr13 13436985 13439055 + 0 NA intron (ENSMUSG00000005397.8, intron 1 of 13) protein_coding-intron (ENSMUSG00000005397.8, intron 1 of 19) -18851 ENSMUSG00000094865.2 ENSMUSG00000094865 ENSMUST00000179046 Gm7426 processed_pseudogene Interval_55871 chr14 101682438 101684555 + 0 NA intron (ENSMUSG00000022111.9, intron 2 of 4) protein_coding-intron (ENSMUSG00000022111.9, intron 6 of 8) 19751 ENSMUSG00000115435.1 ENSMUSG00000115435 ENSMUST00000228798 Gm18075 processed_pseudogene Interval_13941 chr10 24863315 24864644 + 0 NA Intergenic Intergenic -6058 ENSMUSG00000019984.16 ENSMUSG00000019984 ENSMUST00000175786 Med23 protein_coding Interval_111201 chr4 14779136 14779876 + 0 NA intron (ENSMUSG00000023151.9, intron 1 of 7) protein_coding-intron (ENSMUSG00000023151.9, intron 1 of 8) 13171 ENSMUSG00000083280.1 ENSMUSG00000083280 ENSMUST00000121999 Gm11838 processed_pseudogene Interval_155747 chr8 36689268 36689787 + 0 NA intron (ENSMUSG00000031523.16, intron 5 of 17) protein_coding-intron (ENSMUSG00000031523.16, intron 1 of 13) 200336 ENSMUSG00000039620.17 ENSMUSG00000039620 ENSMUST00000125492 Trmt9b protein_coding Interval_169988 chr9 103452619 103453558 + 0 NA exon (ENSMUSG00000032556.11, exon 2 of 7) protein_coding-exon (ENSMUSG00000032556.11, exon 2 of 7) -3992 ENSMUSG00000032556.11 ENSMUSG00000032556 ENSMUST00000124310 Bfsp2 protein_coding Interval_166633 chr9 61434271 61435829 + 0 NA Intergenic Intergenic -7541 ENSMUSG00000111033.1 ENSMUSG00000111033 ENSMUST00000214224 Gm34322 lincRNA Interval_144524 chr7 25680123 25681341 + 0 NA promoter-TSS (ENSMUSG00000063439.7) protein_coding-promoter-TSS (ENSMUSG00000063439.7) -124 ENSMUSG00000063439.7 ENSMUSG00000063439 ENSMUST00000108403 B9d2 protein_coding Interval_134872 chr6 32940392 32940600 + 0 NA intron (ENSMUSG00000053768.13, intron 4 of 7) protein_coding-intron (ENSMUSG00000053768.13, intron 4 of 7) -43425 ENSMUSG00000053768.13 ENSMUSG00000053768 ENSMUST00000115091 Chchd3 protein_coding Interval_152964 chr7 140086687 140087365 + 0 NA Intergenic Intergenic -4514 ENSMUSG00000025468.15 ENSMUSG00000025468 ENSMUST00000211681 Caly protein_coding Interval_49350 chr13 111418040 111418428 + 0 NA Intergenic Intergenic 35189 ENSMUSG00000032745.18 ENSMUSG00000032745 ENSMUST00000129638 Gpbp1 protein_coding Interval_73034 chr17 34263096 34265502 + 0 NA intron (ENSMUSG00000073421.6, intron 1 of 4) protein_coding-intron (ENSMUSG00000073421.6, intron 1 of 4) 1049 ENSMUSG00000073421.6 ENSMUSG00000073421 ENSMUST00000174875 H2-Ab1 protein_coding Interval_109392 chr3 141595017 141596079 + 0 NA intron (ENSMUSG00000059921.15, intron 1 of 15) protein_coding-intron (ENSMUSG00000059921.15, intron 1 of 16) 87352 ENSMUSG00000089924.1 ENSMUSG00000089924 ENSMUST00000160604 Gm15689 antisense Interval_41862 chr13 3633761 3634690 + 0 NA intron (ENSMUSG00000033781.7, intron 1 of 3) protein_coding-intron (ENSMUSG00000033781.7, intron 1 of 5) 136 ENSMUSG00000033781.7 ENSMUSG00000033781 ENSMUST00000141967 Asb13 protein_coding Interval_87252 chr19 47192922 47194140 + 0 NA intron (ENSMUSG00000006435.16, intron 1 of 2) protein_coding-intron (ENSMUSG00000006435.16, intron 1 of 5) 8501 ENSMUSG00000118127.1 ENSMUSG00000118127 ENSMUST00000236668 Gm36693 antisense Interval_155114 chr8 26687093 26687334 + 0 NA Intergenic Intergenic -18907 ENSMUSG00000109680.1 ENSMUSG00000109680 ENSMUST00000211305 Gm32098 lincRNA Interval_85300 chr19 24502393 24503205 + 0 NA intron (ENSMUSG00000024867.14, intron 1 of 3) protein_coding-intron (ENSMUSG00000024867.14, intron 1 of 14) -25443 ENSMUSG00000074922.1 ENSMUSG00000074922 ENSMUST00000099556 Fam122a protein_coding Interval_129436 chr5 120163399 120163632 + 0 NA intron (ENSMUSG00000029594.12, intron 1 of 3) protein_coding-intron (ENSMUSG00000029594.12, intron 21 of 23) -12210 ENSMUSG00000029594.12 ENSMUSG00000029594 ENSMUST00000202788 Rbm19 protein_coding Interval_65892 chr16 30093316 30094210 + 0 NA promoter-TSS (ENSMUSG00000116997.1) processed_pseudogene-promoter-TSS (ENSMUSG00000116997.1) -881 ENSMUSG00000116997.1 ENSMUSG00000116997 ENSMUST00000232024 Gm20040 processed_pseudogene Interval_71292 chr17 21967744 21968971 + 0 NA promoter-TSS (ENSMUSG00000099397.1) processed_pseudogene-promoter-TSS (ENSMUSG00000099397.1) -115 ENSMUSG00000099397.1 ENSMUSG00000099397 ENSMUST00000153199 Gm7809 processed_pseudogene Interval_137351 chr6 71607859 71610081 + 0 NA intron (ENSMUSG00000053470.13, intron 1 of 3) protein_coding-intron (ENSMUSG00000053470.13, intron 11 of 26) 24020 ENSMUSG00000053470.13 ENSMUSG00000053470 ENSMUST00000206597 Kdm3a protein_coding Interval_74023 chr17 46128037 46128967 + 0 NA TTS (ENSMUSG00000023966.8) protein_coding-TTS (ENSMUSG00000023966.8) 3227 ENSMUSG00000023967.9 ENSMUSG00000023967 ENSMUST00000146255 Mrps18a protein_coding Interval_101276 chr2 180126524 180126889 + 0 NA intron (ENSMUSG00000039050.8, intron 2 of 2) protein_coding-intron (ENSMUSG00000039050.8, intron 1 of 13) 7302 ENSMUSG00000039050.8 ENSMUSG00000039050 ENSMUST00000124225 Osbpl2 protein_coding Interval_143203 chr7 4464436 4464976 + 0 NA promoter-TSS (ENSMUSG00000006154.13) protein_coding-promoter-TSS (ENSMUSG00000006154.13) 3991 ENSMUSG00000006154.13 ENSMUSG00000006154 ENSMUST00000164987 Eps8l1 protein_coding Interval_71201 chr17 21105154 21105444 + 0 NA Intergenic Intergenic 5038 ENSMUSG00000102080.2 ENSMUSG00000102080 ENSMUST00000232348 Gm5092 lincRNA Interval_167221 chr9 66276656 66277355 + 0 NA Intergenic Intergenic -73445 ENSMUSG00000038664.16 ENSMUSG00000038664 ENSMUST00000130854 Herc1 protein_coding Interval_129017 chr5 116766250 116767378 + 0 NA intron (ENSMUSG00000106909.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000106909.1, intron 1 of 2) -44417 ENSMUSG00000107237.1 ENSMUSG00000107237 ENSMUST00000201443 Gm29926 lincRNA Interval_61896 chr15 85006788 85007063 + 0 NA Intergenic Intergenic -1214 ENSMUSG00000116343.1 ENSMUSG00000116343 ENSMUST00000230622 Gm6847 processed_pseudogene Interval_87451 chr19 51526861 51527065 + 0 NA Intergenic Intergenic -104586 ENSMUSG00000117806.1 ENSMUSG00000117806 ENSMUST00000237010 Gm50325 processed_pseudogene Interval_42332 chr13 12161225 12161464 + 0 NA TTS (ENSMUSG00000113347.1) processed_pseudogene-TTS (ENSMUSG00000113347.1) 590 ENSMUSG00000113347.1 ENSMUSG00000113347 ENSMUST00000220496 Gm47323 processed_pseudogene Interval_46615 chr13 67608871 67610078 + 0 NA intron (ENSMUSG00000114923.1, intron 1 of 3) protein_coding-intron (ENSMUSG00000058093.13, intron 1 of 3) 171 ENSMUSG00000058093.13 ENSMUSG00000058093 ENSMUST00000138725 Zfp729b protein_coding Interval_35797 chr12 29937716 29939036 + 0 NA intron (ENSMUSG00000020674.17, intron 1 of 8) protein_coding-intron (ENSMUSG00000020674.17, intron 1 of 8) 768 ENSMUSG00000020674.17 ENSMUSG00000020674 ENSMUST00000218620 Pxdn protein_coding Interval_166373 chr9 58726114 58726510 + 0 NA intron (ENSMUSG00000074269.10, intron 1 of 2) protein_coding-intron (ENSMUSG00000074269.10, intron 1 of 5) -30301 ENSMUSG00000093473.1 ENSMUSG00000093473 ENSMUST00000177528 Gm20620 processed_pseudogene Interval_158737 chr8 85661899 85662537 + 0 NA intron (ENSMUSG00000036902.11, intron 6 of 9) protein_coding-intron (ENSMUSG00000036902.11, intron 6 of 8) -38687 ENSMUSG00000098388.1 ENSMUSG00000098388 ENSMUST00000184375 Mir8109 miRNA Interval_72043 chr17 27701854 27702898 + 0 NA intron (ENSMUSG00000040276.15, intron 2 of 9) protein_coding-intron (ENSMUSG00000040276.15, intron 2 of 9) 15973 ENSMUSG00000024215.14 ENSMUSG00000024215 ENSMUST00000138970 Spdef protein_coding Interval_37573 chr12 69969631 69969937 + 0 NA promoter-TSS (ENSMUSG00000113898.1) processed_pseudogene-promoter-TSS (ENSMUSG00000113898.1) 490 ENSMUSG00000079076.2 ENSMUSG00000079076 ENSMUST00000221248 Gm3086 transcribed_processed_pseudogene Interval_107378 chr3 107073295 107074067 + 0 NA intron (ENSMUSG00000098108.7, intron 1 of 5) antisense-intron (ENSMUSG00000098108.7, intron 1 of 5) -17201 ENSMUSG00000050179.3 ENSMUSG00000050179 ENSMUST00000182132 A930002I21Rik lincRNA Interval_104137 chr3 58960816 58961790 + 0 NA Intergenic Intergenic -14327 ENSMUSG00000087815.1 ENSMUSG00000087815 ENSMUST00000157190 Gm22491 snRNA Interval_112325 chr4 40509455 40510149 + 0 NA intron (ENSMUSG00000086355.1, intron 3 of 6) lincRNA-intron (ENSMUSG00000086355.1, intron 3 of 6) 15746 ENSMUSG00000086355.1 ENSMUSG00000086355 ENSMUST00000146043 4933428C19Rik lincRNA Interval_172410 chrX 18180365 18180995 + 0 NA intron (ENSMUSG00000037369.17, intron 2 of 7) protein_coding-intron (ENSMUSG00000037369.17, intron 2 of 28) 34823 ENSMUSG00000025043.3 ENSMUSG00000025043 ENSMUST00000026018 Dusp21 protein_coding Interval_47610 chr13 90040754 90040985 + 0 NA intron (ENSMUSG00000021615.13, intron 3 of 8) protein_coding-intron (ENSMUSG00000021615.13, intron 3 of 7) 48213 ENSMUSG00000021615.13 ENSMUSG00000021615 ENSMUST00000161396 Xrcc4 protein_coding Interval_155911 chr8 40985603 40988752 + 0 NA intron (ENSMUSG00000031595.9, intron 4 of 5) protein_coding-intron (ENSMUSG00000031595.9, intron 4 of 5) 29578 ENSMUSG00000045636.16 ENSMUSG00000045636 ENSMUST00000155055 Mtus1 protein_coding Interval_168229 chr9 78053887 78054532 + 0 NA intron (ENSMUSG00000023333.8, intron 2 of 5) protein_coding-intron (ENSMUSG00000023333.8, intron 2 of 5) 2285 ENSMUSG00000023333.8 ENSMUSG00000023333 ENSMUST00000024104 Gcm1 protein_coding Interval_174475 chrX 153139669 153140637 + 0 NA exon (ENSMUSG00000041658.12, exon 1 of 11) protein_coding-exon (ENSMUSG00000041658.12, exon 1 of 11) 166 ENSMUSG00000041658.12 ENSMUSG00000041658 ENSMUST00000144175 Rragb protein_coding Interval_64891 chr16 17020651 17020985 + 0 NA intron (ENSMUSG00000063358.17, intron 3 of 8) protein_coding-intron (ENSMUSG00000063358.17, intron 3 of 8) -14520 ENSMUSG00000063358.17 ENSMUSG00000063358 ENSMUST00000232480 Mapk1 protein_coding Interval_93937 chr2 79585430 79585995 + 0 NA Intergenic Intergenic -53470 ENSMUSG00000027007.16 ENSMUSG00000027007 ENSMUST00000133266 Itprid2 protein_coding Interval_42409 chr13 13347578 13348424 + 0 NA intron (ENSMUSG00000110123.1, intron 8 of 9) unprocessed_pseudogene-intron (ENSMUSG00000110123.1, intron 8 of 9) 18517 ENSMUSG00000084734.1 ENSMUSG00000084734 ENSMUST00000122785 Gm25804 snoRNA Interval_116235 chr4 108936802 108937620 + 0 NA intron (ENSMUSG00000003411.10, intron 4 of 4) protein_coding-intron (ENSMUSG00000003411.10, intron 3 of 3) -1889 ENSMUSG00000003411.10 ENSMUSG00000003411 ENSMUST00000157062 Rab3b protein_coding Interval_3557 chr1 59570710 59571218 + 0 NA intron (ENSMUSG00000047361.16, intron 11 of 19) protein_coding-intron (ENSMUSG00000047361.16, intron 11 of 19) -11432 ENSMUSG00000047361.16 ENSMUSG00000047361 ENSMUST00000190490 Gm973 protein_coding Interval_135784 chr6 47312663 47313374 + 0 NA Intergenic Intergenic 120071 ENSMUSG00000107853.1 ENSMUSG00000107853 ENSMUST00000203098 Gm18584 processed_pseudogene Interval_29528 chr11 84706980 84708056 + 0 NA Intergenic Intergenic 12914 ENSMUSG00000085044.1 ENSMUSG00000085044 ENSMUST00000150735 1700109G15Rik lincRNA Interval_112922 chr4 46093395 46093618 + 0 NA intron (ENSMUSG00000028328.13, intron 5 of 7) protein_coding-intron (ENSMUSG00000028328.13, intron 6 of 9) -24674 ENSMUSG00000088069.1 ENSMUSG00000088069 ENSMUST00000157444 Gm23250 misc_RNA Interval_83307 chr18 84039483 84039701 + 0 NA intron (ENSMUSG00000046982.11, intron 1 of 1) protein_coding-intron (ENSMUSG00000046982.11, intron 1 of 1) 48114 ENSMUSG00000046982.11 ENSMUSG00000046982 ENSMUST00000237918 Tshz1 protein_coding Interval_110479 chr3 159307103 159307394 + 0 NA exon (ENSMUSG00000106053.1, exon 5 of 5) lincRNA-exon (ENSMUSG00000106053.1, exon 5 of 5) -184170 ENSMUSG00000104864.1 ENSMUSG00000104864 ENSMUST00000197367 Gm43655 processed_pseudogene Interval_125980 chr5 76503939 76504580 + 0 NA intron (ENSMUSG00000091204.8, intron 3 of 3) protein_coding-intron (ENSMUSG00000091204.8, intron 2 of 2) 20219 ENSMUSG00000091204.8 ENSMUSG00000091204 ENSMUST00000172369 Gm7271 protein_coding Interval_149913 chr7 102526274 102526489 + 0 NA Intergenic Intergenic 5050 ENSMUSG00000109906.1 ENSMUSG00000109906 ENSMUST00000210328 Olfr546-ps1 unprocessed_pseudogene Interval_114819 chr4 85819296 85820588 + 0 NA intron (ENSMUSG00000066113.16, intron 2 of 3) protein_coding-intron (ENSMUSG00000066113.16, intron 2 of 3) -89969 ENSMUSG00000088122.2 ENSMUSG00000088122 ENSMUST00000157497 Gm26069 misc_RNA Interval_13302 chr10 14390962 14391717 + 0 NA Intergenic Intergenic 63928 ENSMUSG00000112225.1 ENSMUSG00000112225 ENSMUST00000218527 Gm48854 lincRNA Interval_5046 chr1 84640446 84641178 + 0 NA promoter-TSS (ENSMUSG00000036766.12) protein_coding-promoter-TSS (ENSMUSG00000036766.12) -16971 ENSMUSG00000036766.12 ENSMUSG00000036766 ENSMUST00000191546 Dner protein_coding Interval_52916 chr14 52045025 52045909 + 0 NA Intergenic Intergenic -5614 ENSMUSG00000044286.6 ENSMUSG00000044286 ENSMUST00000214342 Olfr221 protein_coding Interval_158084 chr8 78622424 78622995 + 0 NA intron (ENSMUSG00000031684.11, intron 1 of 2) protein_coding-intron (ENSMUSG00000031684.11, intron 5 of 11) 18415 ENSMUSG00000110244.1 ENSMUSG00000110244 ENSMUST00000211775 Gm2253 processed_pseudogene Interval_18065 chr10 82004558 82005268 + 0 NA Intergenic Intergenic -3466 ENSMUSG00000111985.1 ENSMUSG00000111985 ENSMUST00000218202 Gm8290 processed_pseudogene Interval_1926 chr1 34600009 34600360 + 0 NA Intergenic Intergenic 7535 ENSMUSG00000100524.1 ENSMUSG00000100524 ENSMUST00000186179 Gm28418 processed_pseudogene Interval_6567 chr1 117164894 117165196 + 0 NA Intergenic Intergenic 228487 ENSMUSG00000101154.1 ENSMUSG00000101154 ENSMUST00000189740 Gm17777 processed_pseudogene Interval_78958 chr18 22978258 22979260 + 0 NA intron (ENSMUSG00000041923.15, intron 1 of 9) protein_coding-intron (ENSMUSG00000041923.15, intron 1 of 10) 60180 ENSMUSG00000041923.15 ENSMUSG00000041923 ENSMUST00000097652 Nol4 protein_coding Interval_24996 chr11 42755278 42755642 + 0 NA Intergenic Intergenic -142035 ENSMUSG00000084627.1 ENSMUSG00000084627 ENSMUST00000122678 Gm25543 misc_RNA Interval_143470 chr7 7107898 7109576 + 0 NA TTS (ENSMUSG00000108938.1) processed_pseudogene-TTS (ENSMUSG00000108938.1) 1762 ENSMUSG00000108938.1 ENSMUSG00000108938 ENSMUST00000207478 Gm44583 processed_pseudogene Interval_55637 chr14 97338238 97338431 + 0 NA Intergenic Intergenic -1702 ENSMUSG00000088538.1 ENSMUSG00000088538 ENSMUST00000157913 Gm23276 snoRNA Interval_117425 chr4 123616618 123618311 + 0 NA TTS (ENSMUSG00000099005.1) miRNA-TTS (ENSMUSG00000099005.1) 1044 ENSMUSG00000099005.1 ENSMUSG00000099005 ENSMUST00000184541 Mir6398 miRNA Interval_38781 chr12 82293665 82294054 + 0 NA intron (ENSMUSG00000042700.16, intron 3 of 23) protein_coding-intron (ENSMUSG00000042700.16, intron 2 of 22) 124383 ENSMUSG00000042700.16 ENSMUSG00000042700 ENSMUST00000221327 Sipa1l1 protein_coding Interval_90003 chr2 27251445 27251689 + 0 NA Intergenic Intergenic -41630 ENSMUSG00000009614.16 ENSMUSG00000009614 ENSMUST00000129975 Sardh protein_coding Interval_88490 chr2 5584221 5585247 + 0 NA intron (ENSMUSG00000039145.16, intron 1 of 1) protein_coding-intron (ENSMUSG00000039145.16, intron 1 of 10) -18837 ENSMUSG00000082013.1 ENSMUSG00000082013 ENSMUST00000117145 Gm13216 processed_pseudogene Interval_118702 chr4 133277059 133278267 + 0 NA promoter-TSS (ENSMUSG00000028857.16) protein_coding-promoter-TSS (ENSMUSG00000028857.16) 88 ENSMUSG00000028857.16 ENSMUSG00000028857 ENSMUST00000153059 Tmem222 protein_coding Interval_143256 chr7 4795787 4796644 + 0 NA intron (ENSMUSG00000060860.8, intron 5 of 5) protein_coding-intron (ENSMUSG00000060860.8, intron 5 of 5) 2818 ENSMUSG00000030432.12 ENSMUSG00000030432 ENSMUST00000129888 Rpl28 protein_coding Interval_124343 chr5 44246724 44246973 + 0 NA Intergenic Intergenic -20231 ENSMUSG00000046985.11 ENSMUSG00000046985 ENSMUST00000196151 Tapt1 protein_coding Interval_73413 chr17 37062193 37064036 + 0 NA exon (ENSMUSG00000024462.17, exon 1 of 2) protein_coding-exon (ENSMUSG00000024462.17, exon 1 of 2) 7402 ENSMUSG00000024462.17 ENSMUSG00000024462 ENSMUST00000174071 Gabbr1 protein_coding Interval_146498 chr7 46422181 46423215 + 0 NA promoter-TSS (ENSMUSG00000058975.7) protein_coding-promoter-TSS (ENSMUSG00000058975.7) 25050 ENSMUSG00000058975.7 ENSMUSG00000058975 ENSMUST00000160234 Kcnc1 protein_coding Interval_118105 chr4 128980975 128982600 + 0 NA Intergenic Intergenic -11566 ENSMUSG00000028792.14 ENSMUSG00000028792 ENSMUST00000152762 Ak2 protein_coding Interval_57376 chr15 10330685 10330883 + 0 NA exon (ENSMUSG00000005268.20, exon 10 of 10) protein_coding-exon (ENSMUSG00000005268.20, exon 10 of 10) 5404 ENSMUSG00000094814.1 ENSMUSG00000094814 ENSMUST00000157020 Gm21973 protein_coding Interval_80652 chr18 45375365 45375672 + 0 NA intron (ENSMUSG00000054477.16, intron 1 of 10) protein_coding-intron (ENSMUSG00000054477.16, intron 1 of 10) 43635 ENSMUSG00000117844.1 ENSMUSG00000117844 ENSMUST00000235439 Gm18652 processed_pseudogene Interval_92771 chr2 65331008 65331994 + 0 NA intron (ENSMUSG00000061171.15, intron 9 of 11) protein_coding-intron (ENSMUSG00000061171.15, intron 9 of 11) 32499 ENSMUSG00000061171.15 ENSMUSG00000061171 ENSMUST00000141690 Slc38a11 protein_coding Interval_115322 chr4 96306770 96307282 + 0 NA intron (ENSMUSG00000066097.6, intron 7 of 8) protein_coding-intron (ENSMUSG00000066097.6, intron 7 of 8) -32756 ENSMUSG00000084286.1 ENSMUSG00000084286 ENSMUST00000122267 Cyp2j15-ps unprocessed_pseudogene Interval_37327 chr12 65135800 65136586 + 0 NA TTS (ENSMUSG00000047534.17) protein_coding-TTS (ENSMUSG00000047534.17) -36187 ENSMUSG00000112992.1 ENSMUSG00000112992 ENSMUST00000223249 Gm47869 processed_pseudogene Interval_84704 chr19 15648778 15649811 + 0 NA Intergenic Intergenic -30710 ENSMUSG00000094850.1 ENSMUSG00000094850 ENSMUST00000083389 Gm24319 snRNA Interval_25372 chr11 46828484 46828753 + 0 NA intron (ENSMUSG00000055546.6, intron 5 of 8) protein_coding-intron (ENSMUSG00000055546.6, intron 5 of 8) 17818 ENSMUSG00000055546.6 ENSMUSG00000055546 ENSMUST00000068877 Timd4 protein_coding Interval_89337 chr2 19448150 19448434 + 0 NA TTS (ENSMUSG00000026735.2) protein_coding-TTS (ENSMUSG00000026735.2) -1618 ENSMUSG00000085388.1 ENSMUSG00000085388 ENSMUST00000122978 Ptf1aos antisense Interval_30782 chr11 96425146 96425489 + 0 NA Intergenic Intergenic 33205 ENSMUSG00000075587.5 ENSMUSG00000075587 ENSMUST00000117614 Gm11531 processed_pseudogene Interval_104354 chr3 63963776 63965128 + 0 NA promoter-TSS (ENSMUSG00000027822.16) protein_coding-promoter-TSS (ENSMUSG00000027822.16) 214 ENSMUSG00000027822.16 ENSMUSG00000027822 ENSMUST00000160883 Slc33a1 protein_coding Interval_36874 chr12 54862080 54863404 + 0 NA promoter-TSS (ENSMUSG00000113209.1) bidirectional_promoter_lncRNA-promoter-TSS (ENSMUSG00000113209.1) 56 ENSMUSG00000062929.8 ENSMUSG00000062929 ENSMUST00000223095 Cfl2 protein_coding Interval_45503 chr13 55512616 55513768 + 0 NA promoter-TSS (ENSMUSG00000021493.15) protein_coding-promoter-TSS (ENSMUSG00000021493.15) 246 ENSMUSG00000021493.15 ENSMUSG00000021493 ENSMUST00000153426 Pdlim7 protein_coding Interval_16142 chr10 60997177 60997901 + 0 NA Intergenic Intergenic -33764 ENSMUSG00000093568.1 ENSMUSG00000093568 ENSMUST00000177492 Gm20611 lincRNA Interval_130379 chr5 127122875 127123414 + 0 NA Intergenic Intergenic 15075 ENSMUSG00000105575.1 ENSMUSG00000105575 ENSMUST00000196673 Gm43475 lincRNA Interval_103274 chr3 37745700 37746257 + 0 NA Intergenic Intergenic 11248 ENSMUSG00000097304.1 ENSMUSG00000097304 ENSMUST00000181857 Rpl31-ps15 processed_pseudogene Interval_112412 chr4 41100848 41101737 + 0 NA Intergenic Intergenic -6844 ENSMUSG00000028435.8 ENSMUSG00000028435 ENSMUST00000154722 Aqp3 protein_coding Interval_97612 chr2 140546855 140547314 + 0 NA intron (ENSMUSG00000068205.14, intron 3 of 3) protein_coding-intron (ENSMUSG00000068205.14, intron 3 of 17) -106437 ENSMUSG00000065769.1 ENSMUSG00000065769 ENSMUST00000083835 Gm23846 snRNA Interval_155776 chr8 37460416 37460923 + 0 NA Intergenic Intergenic -59649 ENSMUSG00000109820.1 ENSMUSG00000109820 ENSMUST00000210980 Gm45654 processed_pseudogene Interval_83956 chr19 5802400 5804257 + 0 NA promoter-TSS (ENSMUSG00000092341.3) lincRNA-promoter-TSS (ENSMUSG00000092341.3) 1387 ENSMUSG00000102349.1 ENSMUSG00000102349 ENSMUST00000192176 Gm37376 TEC Interval_124595 chr5 52144141 52144502 + 0 NA Intergenic Intergenic -1748 ENSMUSG00000106648.1 ENSMUSG00000106648 ENSMUST00000199653 Gm43176 TEC Interval_2617 chr1 42334249 42334936 + 0 NA intron (ENSMUSG00000100180.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000100180.1, intron 1 of 2) 21345 ENSMUSG00000100180.1 ENSMUSG00000100180 ENSMUST00000190148 Gm28140 lincRNA Interval_107241 chr3 104852834 104853155 + 0 NA intron (ENSMUSG00000070372.11, intron 1 of 5) protein_coding-intron (ENSMUSG00000070372.11, intron 1 of 9) -10033 ENSMUSG00000070372.11 ENSMUSG00000070372 ENSMUST00000155476 Capza1 protein_coding Interval_87121 chr19 46304028 46305951 + 0 NA promoter-TSS (ENSMUSG00000025225.15) protein_coding-promoter-TSS (ENSMUSG00000025225.15) 616 ENSMUSG00000118087.1 ENSMUSG00000118087 ENSMUST00000236655 4833438C02Rik bidirectional_promoter_lncRNA Interval_173805 chrX 104618311 104618497 + 0 NA intron (ENSMUSG00000033906.5, intron 2 of 11) protein_coding-intron (ENSMUSG00000033906.5, intron 2 of 11) 1539 ENSMUSG00000089171.1 ENSMUSG00000089171 ENSMUST00000158546 Gm22430 snoRNA Interval_78691 chr18 17520665 17521175 + 0 NA Intergenic Intergenic 60070 ENSMUSG00000117615.1 ENSMUSG00000117615 ENSMUST00000234987 4930545E07Rik lincRNA Interval_156584 chr8 53435731 53435936 + 0 NA promoter-TSS (ENSMUSG00000110362.1) lincRNA-promoter-TSS (ENSMUSG00000110362.1) -385 ENSMUSG00000110362.1 ENSMUSG00000110362 ENSMUST00000210731 Gm45554 lincRNA Interval_12961 chr10 8757540 8758068 + 0 NA intron (ENSMUSG00000015305.6, intron 8 of 19) protein_coding-intron (ENSMUSG00000015305.6, intron 8 of 19) 44563 ENSMUSG00000111215.1 ENSMUSG00000111215 ENSMUST00000213934 Gm48654 lincRNA Interval_56735 chr14 121738457 121738852 + 0 NA exon (ENSMUSG00000025558.19, exon 1 of 55) protein_coding-exon (ENSMUSG00000025558.19, exon 1 of 55) 207 ENSMUSG00000025558.19 ENSMUSG00000025558 ENSMUST00000238406 Dock9 protein_coding Interval_97113 chr2 131351932 131353439 + 0 NA intron (ENSMUSG00000048911.15, intron 1 of 6) protein_coding-intron (ENSMUSG00000048911.15, intron 1 of 5) 177 ENSMUSG00000048911.15 ENSMUSG00000048911 ENSMUST00000142982 Rnf24 protein_coding Interval_126536 chr5 89921400 89921706 + 0 NA Intergenic Intergenic -38219 ENSMUSG00000043635.12 ENSMUSG00000043635 ENSMUST00000196507 Adamts3 protein_coding Interval_132196 chr5 143284689 143285221 + 0 NA Intergenic Intergenic 8668 ENSMUSG00000093910.2 ENSMUSG00000093910 ENSMUST00000180336 Zfp853 protein_coding Interval_147200 chr7 64373343 64374374 + 0 NA promoter-TSS (ENSMUSG00000033458.17) protein_coding-promoter-TSS (ENSMUSG00000033458.17) -485 ENSMUSG00000033458.17 ENSMUSG00000033458 ENSMUST00000206730 Fan1 protein_coding Interval_21038 chr10 124852912 124853302 + 0 NA Intergenic Intergenic 4385 ENSMUSG00000112542.1 ENSMUSG00000112542 ENSMUST00000217790 Gm47840 TEC Interval_45789 chr13 58085165 58085523 + 0 NA intron (ENSMUSG00000014164.15, intron 2 of 14) protein_coding-intron (ENSMUSG00000014164.15, intron 4 of 16) 28248 ENSMUSG00000014164.15 ENSMUSG00000014164 ENSMUST00000160860 Klhl3 protein_coding Interval_82343 chr18 71478615 71478857 + 0 NA intron (ENSMUSG00000060534.16, intron 12 of 28) protein_coding-intron (ENSMUSG00000060534.16, intron 12 of 28) -571085 ENSMUSG00000118271.1 ENSMUSG00000118271 ENSMUST00000236972 Gm50262 processed_pseudogene Interval_55196 chr14 79273727 79274005 + 0 NA Intergenic Intergenic 13413 ENSMUSG00000115045.1 ENSMUSG00000115045 ENSMUST00000226573 Gm49028 processed_pseudogene Interval_71890 chr17 26828580 26828817 + 0 NA Intergenic Intergenic 16311 ENSMUSG00000015579.5 ENSMUSG00000015579 ENSMUST00000235454 Nkx2-5 protein_coding Interval_5103 chr1 84948876 84949392 + 0 NA Intergenic Intergenic -9848 ENSMUSG00000118590.1 ENSMUSG00000118590 ENSMUST00000239195 AC167036.1 protein_coding Interval_112087 chr4 34576751 34577320 + 0 NA promoter-TSS (ENSMUSG00000040044.11) protein_coding-promoter-TSS (ENSMUSG00000040044.11) 26084 ENSMUSG00000028291.7 ENSMUSG00000028291 ENSMUST00000132230 Akirin2 protein_coding Interval_83128 chr18 81820733 81820998 + 0 NA intron (ENSMUSG00000118254.1, intron 4 of 5) lincRNA-intron (ENSMUSG00000118254.1, intron 4 of 5) 29151 ENSMUSG00000117892.1 ENSMUSG00000117892 ENSMUST00000237663 Gm30454 lincRNA Interval_74566 chr17 53472925 53473224 + 0 NA Intergenic Intergenic -5759 ENSMUSG00000117111.1 ENSMUSG00000117111 ENSMUST00000232903 Tpt1-ps7 processed_pseudogene Interval_90432 chr2 30415164 30416645 + 0 NA promoter-TSS (ENSMUSG00000026853.15) protein_coding-promoter-TSS (ENSMUSG00000026853.15) -356 ENSMUSG00000026853.15 ENSMUSG00000026853 ENSMUST00000142096 Crat protein_coding Interval_104527 chr3 67449672 67450381 + 0 NA intron (ENSMUSG00000027774.16, intron 9 of 13) protein_coding-intron (ENSMUSG00000027774.16, intron 9 of 17) 11608 ENSMUSG00000047557.2 ENSMUSG00000047557 ENSMUST00000160202 Lxn protein_coding Interval_134075 chr6 18822431 18822618 + 0 NA Intergenic Intergenic -2028 ENSMUSG00000071568.5 ENSMUSG00000071568 ENSMUST00000096101 Gm5874 processed_pseudogene Interval_101434 chr2 181364371 181366309 + 0 NA promoter-TSS (ENSMUSG00000038671.15) protein_coding-promoter-TSS (ENSMUSG00000038671.15) 2 ENSMUSG00000038671.15 ENSMUSG00000038671 ENSMUST00000145358 Arfrp1 protein_coding Interval_118583 chr4 132621753 132622086 + 0 NA Intergenic Intergenic -17127 ENSMUSG00000028886.15 ENSMUSG00000028886 ENSMUST00000130833 Eya3 protein_coding Interval_13054 chr10 10556968 10558520 + 0 NA intron (ENSMUSG00000019832.5, intron 1 of 3) protein_coding-intron (ENSMUSG00000019832.5, intron 1 of 2) 437 ENSMUSG00000019832.5 ENSMUSG00000019832 ENSMUST00000220018 Rab32 protein_coding Interval_41140 chr12 111445517 111446382 + 0 NA promoter-TSS (ENSMUSG00000021281.15) protein_coding-promoter-TSS (ENSMUSG00000021281.15) -135 ENSMUSG00000021281.15 ENSMUSG00000021281 ENSMUST00000127028 Tnfaip2 protein_coding Interval_116979 chr4 118620308 118621738 + 0 NA promoter-TSS (ENSMUSG00000028730.14) protein_coding-promoter-TSS (ENSMUSG00000028730.14) 173 ENSMUSG00000028729.15 ENSMUSG00000028729 ENSMUST00000126458 Ebna1bp2 protein_coding Interval_69564 chr16 94301860 94303548 + 0 NA intron (ENSMUSG00000040820.16, intron 1 of 10) protein_coding-intron (ENSMUSG00000040820.16, intron 1 of 10) -25716 ENSMUSG00000022941.8 ENSMUSG00000022941 ENSMUST00000023660 Ripply3 protein_coding Interval_67189 chr16 44248977 44249739 + 0 NA intron (ENSMUSG00000022696.17, intron 21 of 24) protein_coding-intron (ENSMUSG00000022696.17, intron 22 of 25) 33140 ENSMUSG00000022696.17 ENSMUSG00000022696 ENSMUST00000124651 Sidt1 protein_coding Interval_153959 chr8 11496931 11498192 + 0 NA promoter-TSS (ENSMUSG00000031505.11) protein_coding-promoter-TSS (ENSMUSG00000031505.11) -14825 ENSMUSG00000031505.11 ENSMUSG00000031505 ENSMUST00000210316 Naxd protein_coding Interval_96728 chr2 127506302 127507764 + 0 NA intron (ENSMUSG00000118630.1, intron 2 of 5) protein_coding-intron (ENSMUSG00000079056.12, intron 2 of 8) 12262 ENSMUSG00000118630.1 ENSMUSG00000118630 ENSMUST00000239264 AL731831.1 unprocessed_pseudogene Interval_2331 chr1 38108456 38108645 + 0 NA intron (ENSMUSG00000026082.11, intron 1 of 22) protein_coding-intron (ENSMUSG00000026082.11, intron 1 of 22) 21251 ENSMUSG00000026082.11 ENSMUSG00000026082 ENSMUST00000195383 Rev1 protein_coding Interval_146956 chr7 56236029 56236462 + 0 NA Intergenic Intergenic -3536 ENSMUSG00000030450.11 ENSMUSG00000030450 ENSMUST00000154559 Oca2 protein_coding Interval_5064 chr1 84751212 84751552 + 0 NA promoter-TSS (ENSMUSG00000026219.14) protein_coding-promoter-TSS (ENSMUSG00000026219.14) -22506 ENSMUSG00000026219.14 ENSMUSG00000026219 ENSMUST00000187818 Trip12 protein_coding Interval_67826 chr16 57509999 57510362 + 0 NA intron (ENSMUSG00000043336.14, intron 3 of 4) protein_coding-intron (ENSMUSG00000043336.14, intron 3 of 4) 96684 ENSMUSG00000022748.8 ENSMUSG00000022748 ENSMUST00000232413 Cmss1 protein_coding Interval_96487 chr2 124952611 124953612 + 0 NA Intergenic Intergenic -127244 ENSMUSG00000035183.14 ENSMUSG00000035183 ENSMUST00000149963 Slc24a5 protein_coding Interval_120955 chr4 151905506 151906699 + 0 NA Intergenic Intergenic 10312 ENSMUSG00000104142.1 ENSMUSG00000104142 ENSMUST00000191938 Gm37141 TEC Interval_6986 chr1 121561270 121562003 + 0 NA intron (ENSMUSG00000001674.11, intron 5 of 12) protein_coding-intron (ENSMUSG00000001674.11, intron 5 of 12) -2421 ENSMUSG00000001674.11 ENSMUSG00000001674 ENSMUST00000131471 Ddx18 protein_coding Interval_87316 chr19 47615747 47616080 + 0 NA intron (ENSMUSG00000025060.15, intron 6 of 18) protein_coding-intron (ENSMUSG00000025060.15, intron 6 of 17) 1193 ENSMUSG00000086121.1 ENSMUSG00000086121 ENSMUST00000136557 Gm16068 antisense Interval_35034 chr12 16793243 16793703 + 0 NA intron (ENSMUSG00000036523.16, intron 1 of 34) protein_coding-intron (ENSMUSG00000036523.16, intron 1 of 3) 7211 ENSMUSG00000036523.16 ENSMUSG00000036523 ENSMUST00000161998 Greb1 protein_coding Interval_14812 chr10 40191810 40192076 + 0 NA Intergenic Intergenic -8251 ENSMUSG00000111045.1 ENSMUSG00000111045 ENSMUST00000214034 Gm47598 lincRNA Interval_172395 chrX 17531290 17531617 + 0 NA Intergenic Intergenic 40188 ENSMUSG00000025040.13 ENSMUSG00000025040 ENSMUST00000142638 Fundc1 protein_coding Interval_29898 chr11 87595278 87596131 + 0 NA promoter-TSS (ENSMUSG00000018401.17) protein_coding-promoter-TSS (ENSMUSG00000018401.17) 3478 ENSMUSG00000018401.17 ENSMUSG00000018401 ENSMUST00000134216 Mtmr4 protein_coding Interval_107344 chr3 106040251 106040587 + 0 NA Intergenic Intergenic 3012 ENSMUSG00000105277.1 ENSMUSG00000105277 ENSMUST00000196322 Gm9504 processed_pseudogene Interval_100375 chr2 168705070 168706032 + 0 NA intron (ENSMUSG00000027546.15, intron 3 of 27) protein_coding-intron (ENSMUSG00000027546.15, intron 3 of 27) 36413 ENSMUSG00000027546.15 ENSMUSG00000027546 ENSMUST00000156555 Atp9a protein_coding Interval_56635 chr14 121028025 121028356 + 0 NA Intergenic Intergenic -73889 ENSMUSG00000025555.14 ENSMUSG00000025555 ENSMUST00000137971 Farp1 protein_coding Interval_642 chr1 9408376 9408591 + 0 NA Intergenic Intergenic -9796 ENSMUSG00000101571.2 ENSMUSG00000101571 ENSMUST00000040649 Gm6187 processed_pseudogene Interval_62415 chr15 92234482 92234780 + 0 NA intron (ENSMUSG00000055022.14, intron 6 of 23) protein_coding-intron (ENSMUSG00000055022.14, intron 6 of 23) -109728 ENSMUSG00000097068.2 ENSMUSG00000097068 ENSMUST00000181901 Gm26760 lincRNA Interval_37953 chr12 73294390 73295589 + 0 NA intron (ENSMUSG00000044712.15, intron 4 of 4) protein_coding-intron (ENSMUSG00000044712.15, intron 4 of 4) 8094 ENSMUSG00000044712.15 ENSMUSG00000044712 ENSMUST00000150996 Slc38a6 protein_coding Interval_97459 chr2 136752705 136752956 + 0 NA intron (ENSMUSG00000027273.13, intron 1 of 2) protein_coding-intron (ENSMUSG00000027273.13, intron 1 of 7) -8215 ENSMUSG00000082849.1 ENSMUSG00000082849 ENSMUST00000121662 Gm14053 processed_pseudogene Interval_136506 chr6 55018475 55018841 + 0 NA Intergenic Intergenic -26034 ENSMUSG00000002797.9 ENSMUSG00000002797 ENSMUST00000204770 Ggct protein_coding Interval_127451 chr5 104039510 104040052 + 0 NA Intergenic Intergenic -6745 ENSMUSG00000029310.13 ENSMUSG00000029310 ENSMUST00000148261 Nudt9 protein_coding Interval_42811 chr13 19913913 19915289 + 0 NA Intergenic Intergenic 81203 ENSMUSG00000050243.6 ENSMUSG00000050243 ENSMUST00000091762 Gm5446 processed_pseudogene Interval_19898 chr10 111055840 111056417 + 0 NA Intergenic Intergenic -46133 ENSMUSG00000035798.14 ENSMUSG00000035798 ENSMUST00000218981 Zdhhc17 protein_coding Interval_170485 chr9 108274846 108275240 + 0 NA Intergenic Intergenic -11292 ENSMUSG00000039952.15 ENSMUSG00000039952 ENSMUST00000193701 Dag1 protein_coding Interval_106254 chr3 94942828 94944390 + 0 NA intron (ENSMUSG00000068874.13, intron 9 of 11) protein_coding-intron (ENSMUSG00000068874.13, intron 9 of 11) 10450 ENSMUSG00000068874.13 ENSMUSG00000068874 ENSMUST00000145551 Selenbp1 protein_coding Interval_22828 chr11 16411966 16413437 + 0 NA intron (ENSMUSG00000048834.16, intron 6 of 6) protein_coding-intron (ENSMUSG00000048834.16, intron 6 of 6) -26553 ENSMUSG00000083925.1 ENSMUSG00000083925 ENSMUST00000118857 Gm12012 processed_pseudogene Interval_71664 chr17 25239686 25240734 + 0 NA promoter-TSS (ENSMUSG00000035521.13) protein_coding-promoter-TSS (ENSMUSG00000035521.13) 40 ENSMUSG00000015126.9 ENSMUSG00000015126 ENSMUST00000063574 Tsr3 protein_coding Interval_103019 chr3 34500294 34500482 + 0 NA intron (ENSMUSG00000105265.4, intron 2 of 2) processed_transcript-intron (ENSMUSG00000105265.4, intron 2 of 4) -18181 ENSMUSG00000099437.1 ENSMUSG00000099437 ENSMUST00000188411 Gm29135 lincRNA Interval_122414 chr5 22358244 22358625 + 0 NA TTS (ENSMUSG00000088578.1) snoRNA-TTS (ENSMUSG00000088578.1) 843 ENSMUSG00000088578.1 ENSMUSG00000088578 ENSMUST00000157953 Gm25459 snoRNA Interval_65122 chr16 19907038 19907378 + 0 NA Intergenic Intergenic -22934 ENSMUSG00000075330.4 ENSMUSG00000075330 ENSMUST00000231564 A930003A15Rik protein_coding Interval_169601 chr9 99394494 99394845 + 0 NA promoter-TSS (ENSMUSG00000032470.17) protein_coding-promoter-TSS (ENSMUSG00000032470.17) 26 ENSMUSG00000032470.17 ENSMUSG00000032470 ENSMUST00000123771 Mras protein_coding Interval_126466 chr5 88719651 88721457 + 0 NA promoter-TSS (ENSMUSG00000006262.15) protein_coding-promoter-TSS (ENSMUSG00000006262.15) -301 ENSMUSG00000006262.15 ENSMUSG00000006262 ENSMUST00000125171 Mob1b protein_coding Interval_140698 chr6 120644315 120645124 + 0 NA Intergenic Intergenic -64543 ENSMUSG00000107580.1 ENSMUSG00000107580 ENSMUST00000204159 Gm44124 TEC Interval_17685 chr10 79495961 79497774 + 0 NA Intergenic Intergenic 28028 ENSMUSG00000091381.3 ENSMUSG00000091381 ENSMUST00000233849 Vmn2r83 protein_coding Interval_157712 chr8 72453683 72454072 + 0 NA intron (ENSMUSG00000052794.13, intron 4 of 7) protein_coding-intron (ENSMUSG00000052794.13, intron 4 of 7) -4013 ENSMUSG00000052794.13 ENSMUSG00000052794 ENSMUST00000139130 1700030K09Rik protein_coding Interval_157114 chr8 65365195 65365411 + 0 NA Intergenic Intergenic -1998 ENSMUSG00000064905.1 ENSMUSG00000064905 ENSMUST00000082971 Gm25403 misc_RNA Interval_162243 chr8 126396995 126397212 + 0 NA Intergenic Intergenic -25425 ENSMUSG00000051671.7 ENSMUSG00000051671 ENSMUST00000211868 Coa6 protein_coding Interval_67966 chr16 62025277 62025582 + 0 NA Intergenic Intergenic -72032 ENSMUSG00000116619.1 ENSMUSG00000116619 ENSMUST00000232249 Gm49615 lincRNA Interval_169120 chr9 92880641 92880810 + 0 NA Intergenic Intergenic -15107 ENSMUSG00000099823.1 ENSMUSG00000099823 ENSMUST00000187280 Gm28054 lincRNA Interval_72987 chr17 33980291 33982585 + 0 NA promoter-TSS (ENSMUSG00000092512.2) processed_pseudogene-promoter-TSS (ENSMUSG00000092512.2) -56 ENSMUSG00000118084.1 ENSMUSG00000118084 ENSMUST00000235802 AA388235 lincRNA Interval_5315 chr1 87493937 87494181 + 0 NA intron (ENSMUSG00000026259.14, intron 5 of 14) protein_coding-intron (ENSMUSG00000026259.14, intron 3 of 12) -7882 ENSMUSG00000026259.14 ENSMUSG00000026259 ENSMUST00000166463 Ngef protein_coding Interval_123254 chr5 30915667 30916400 + 0 NA intron (ENSMUSG00000029163.9, intron 3 of 7) protein_coding-intron (ENSMUSG00000029163.9, intron 3 of 7) -3888 ENSMUSG00000029163.9 ENSMUSG00000029163 ENSMUST00000202368 Emilin1 protein_coding Interval_153466 chr7 145001741 145003020 + 0 NA Intergenic Intergenic -62455 ENSMUSG00000070348.5 ENSMUSG00000070348 ENSMUST00000135985 Ccnd1 protein_coding Interval_166401 chr9 59035415 59037248 + 0 NA promoter-TSS (ENSMUSG00000032340.8) protein_coding-promoter-TSS (ENSMUSG00000032340.8) 96 ENSMUSG00000032340.8 ENSMUSG00000032340 ENSMUST00000216964 Neo1 protein_coding Interval_130140 chr5 124490034 124490729 + 0 NA exon (ENSMUSG00000029402.8, exon 2 of 2) protein_coding-exon (ENSMUSG00000029402.8, exon 2 of 2) 7179 ENSMUSG00000029402.8 ENSMUSG00000029402 ENSMUST00000111453 Snrnp35 protein_coding Interval_70812 chr17 14927019 14929028 + 0 NA intron (ENSMUSG00000046991.12, intron 4 of 24) protein_coding-intron (ENSMUSG00000046991.12, intron 3 of 22) -13942 ENSMUSG00000092577.1 ENSMUSG00000092577 ENSMUST00000172650 Gm7393 processed_pseudogene Interval_66273 chr16 32798505 32798914 + 0 NA Intergenic Intergenic -1274 ENSMUSG00000035638.14 ENSMUSG00000035638 ENSMUST00000041123 Muc20 protein_coding Interval_107178 chr3 104359713 104359994 + 0 NA intron (ENSMUSG00000022187.2, intron 1 of 1) lincRNA-intron (ENSMUSG00000022187.2, intron 1 of 1) 6760 ENSMUSG00000022187.2 ENSMUSG00000022187 ENSMUST00000056145 Gm5546 lincRNA Interval_132916 chr5 148727479 148729125 + 0 NA Intergenic Intergenic -13538 ENSMUSG00000086494.1 ENSMUSG00000086494 ENSMUST00000150265 2210417A02Rik lincRNA Interval_60921 chr15 77857502 77858883 + 0 NA Intergenic Intergenic -17436 ENSMUSG00000084497.1 ENSMUSG00000084497 ENSMUST00000122548 Gm22107 snRNA Interval_46835 chr13 71962653 71964551 + 0 NA exon (ENSMUSG00000060969.9, exon 1 of 4) protein_coding-exon (ENSMUSG00000060969.9, exon 1 of 4) -2886 ENSMUSG00000060969.9 ENSMUSG00000060969 ENSMUST00000223460 Irx1 protein_coding Interval_148764 chr7 86385854 86386569 + 0 NA exon (ENSMUSG00000062426.2, exon 1 of 1) protein_coding-exon (ENSMUSG00000062426.2, exon 1 of 1) 447 ENSMUSG00000062426.2 ENSMUSG00000062426 ENSMUST00000077210 Olfr304 protein_coding Interval_155455 chr8 33696080 33696350 + 0 NA intron (ENSMUSG00000031584.16, intron 12 of 12) protein_coding-intron (ENSMUSG00000031584.16, intron 12 of 12) 4414 ENSMUSG00000088856.1 ENSMUSG00000088856 ENSMUST00000158231 Gm24727 snoRNA Interval_48903 chr13 104589834 104591310 + 0 NA Intergenic Intergenic -94359 ENSMUSG00000084860.1 ENSMUSG00000084860 ENSMUST00000131215 2610204G07Rik antisense Interval_64603 chr16 13618016 13619580 + 0 NA intron (ENSMUSG00000022685.9, intron 19 of 23) protein_coding-intron (ENSMUSG00000022685.9, intron 18 of 23) 49340 ENSMUSG00000022685.9 ENSMUSG00000022685 ENSMUST00000229251 Parn protein_coding Interval_110100 chr3 153292930 153293280 + 0 NA intron (ENSMUSG00000052544.9, intron 3 of 4) protein_coding-intron (ENSMUSG00000052544.9, intron 2 of 2) 5544 ENSMUSG00000105023.1 ENSMUSG00000105023 ENSMUST00000197231 1700012D16Rik sense_intronic Interval_168865 chr9 88221196 88222452 + 0 NA Intergenic Intergenic -38071 ENSMUSG00000100782.1 ENSMUSG00000100782 ENSMUST00000190118 Gm28231 lincRNA Interval_26345 chr11 56896023 56896347 + 0 NA Intergenic Intergenic -280333 ENSMUSG00000020524.16 ENSMUSG00000020524 ENSMUST00000173531 Gria1 protein_coding Interval_14150 chr10 28115520 28115841 + 0 NA intron (ENSMUSG00000019889.10, intron 1 of 2) protein_coding-intron (ENSMUSG00000019889.10, intron 1 of 31) -49490 ENSMUSG00000112432.1 ENSMUSG00000112432 ENSMUST00000218855 Gm18507 processed_pseudogene Interval_76038 chr17 74516787 74517906 + 0 NA Intergenic Intergenic 10298 ENSMUSG00000117358.1 ENSMUSG00000117358 ENSMUST00000234285 Gm31645 processed_transcript Interval_114845 chr4 86269556 86269824 + 0 NA intron (ENSMUSG00000066113.16, intron 13 of 28) protein_coding-intron (ENSMUSG00000066113.16, intron 12 of 27) 172651 ENSMUSG00000083272.1 ENSMUSG00000083272 ENSMUST00000118478 Gm12550 processed_pseudogene Interval_172441 chrX 20357742 20358350 + 0 NA Intergenic Intergenic -6529 ENSMUSG00000060090.16 ENSMUSG00000060090 ENSMUST00000133619 Rp2 protein_coding Interval_95094 chr2 103819019 103820342 + 0 NA promoter-TSS (ENSMUSG00000081010.3) processed_pseudogene-promoter-TSS (ENSMUSG00000081010.3) -204 ENSMUSG00000081010.3 ENSMUSG00000081010 ENSMUST00000118421 Gm13880 processed_pseudogene Interval_148400 chr7 81027884 81028104 + 0 NA intron (ENSMUSG00000005621.11, intron 3 of 9) protein_coding-intron (ENSMUSG00000005621.11, intron 3 of 9) 4574 ENSMUSG00000005621.11 ENSMUSG00000005621 ENSMUST00000125137 Zfp592 protein_coding Interval_31551 chr11 101323351 101324172 + 0 NA TTS (ENSMUSG00000078652.9) protein_coding-TTS (ENSMUSG00000078652.9) -1326 ENSMUSG00000078651.8 ENSMUSG00000078651 ENSMUST00000107264 Aoc2 protein_coding Interval_155703 chr8 36268051 36268380 + 0 NA Intergenic Intergenic -18699 ENSMUSG00000039633.7 ENSMUSG00000039633 ENSMUST00000065297 Lonrf1 protein_coding Interval_91434 chr2 38822850 38824419 + 0 NA intron (ENSMUSG00000085201.1, intron 1 of 2) protein_coding-intron (ENSMUSG00000063972.13, intron 3 of 10) 293 ENSMUSG00000085201.1 ENSMUSG00000085201 ENSMUST00000151229 Nr6a1os antisense Interval_21139 chr10 126832208 126833612 + 0 NA Intergenic Intergenic 7591 ENSMUSG00000089550.1 ENSMUSG00000089550 ENSMUST00000158925 Gm24179 snoRNA Interval_153006 chr7 140821250 140822432 + 0 NA intron (ENSMUSG00000110136.1, intron 4 of 4) protein_coding-intron (ENSMUSG00000060314.13, intron 1 of 3) 305 ENSMUSG00000060314.13 ENSMUSG00000060314 ENSMUST00000150053 Zfp941 protein_coding Interval_151444 chr7 122506327 122506945 + 0 NA intron (ENSMUSG00000052889.11, intron 5 of 17) protein_coding-intron (ENSMUSG00000052889.11, intron 5 of 16) -22216 ENSMUSG00000087520.2 ENSMUSG00000087520 ENSMUST00000140453 Gm14389 processed_pseudogene Interval_78174 chr18 9777502 9777804 + 0 NA intron (ENSMUSG00000036103.9, intron 2 of 9) protein_coding-intron (ENSMUSG00000036103.9, intron 2 of 10) -14391 ENSMUSG00000089054.1 ENSMUSG00000089054 ENSMUST00000158429 Gm23350 snRNA Interval_166368 chr9 58690762 58691152 + 0 NA intron (ENSMUSG00000074269.10, intron 2 of 2) protein_coding-intron (ENSMUSG00000074269.10, intron 2 of 5) 5054 ENSMUSG00000093473.1 ENSMUSG00000093473 ENSMUST00000177528 Gm20620 processed_pseudogene Interval_164999 chr9 43784761 43785078 + 0 NA intron (ENSMUSG00000032012.9, intron 1 of 7) protein_coding-intron (ENSMUSG00000032012.9, intron 1 of 5) 40275 ENSMUSG00000032012.9 ENSMUSG00000032012 ENSMUST00000180221 Nectin1 protein_coding Interval_45312 chr13 54247737 54248141 + 0 NA Intergenic Intergenic 2643 ENSMUSG00000113327.1 ENSMUSG00000113327 ENSMUST00000221038 Gm48615 lincRNA Interval_128253 chr5 112072163 112072874 + 0 NA Intergenic Intergenic -83719 ENSMUSG00000104538.1 ENSMUSG00000104538 ENSMUST00000197688 1700016B01Rik lincRNA Interval_64350 chr16 10699867 10700608 + 0 NA intron (ENSMUSG00000068663.14, intron 21 of 22) protein_coding-intron (ENSMUSG00000068663.14, intron 22 of 23) -16698 ENSMUSG00000087384.1 ENSMUSG00000087384 ENSMUST00000126849 Gm15558 antisense Interval_125240 chr5 65599256 65601426 + 0 NA Intergenic Intergenic -8901 ENSMUSG00000107102.1 ENSMUSG00000107102 ENSMUST00000202274 Gm42726 antisense Interval_142671 chr6 144940613 144941363 + 0 NA Intergenic Intergenic 97200 ENSMUSG00000088867.1 ENSMUSG00000088867 ENSMUST00000158242 Gm23071 rRNA Interval_96760 chr2 127817679 127817946 + 0 NA intron (ENSMUSG00000027379.13, intron 9 of 24) protein_coding-intron (ENSMUSG00000027379.13, intron 9 of 24) -3945 ENSMUSG00000027379.13 ENSMUSG00000027379 ENSMUST00000133943 Bub1 protein_coding Interval_33645 chr11 117721123 117721326 + 0 NA exon (ENSMUSG00000025571.13, exon 5 of 22) protein_coding-exon (ENSMUSG00000025571.13, exon 5 of 22) -28007 ENSMUSG00000025571.13 ENSMUSG00000025571 ENSMUST00000141287 Tnrc6c protein_coding Interval_168285 chr9 78429049 78429301 + 0 NA exon (ENSMUSG00000087052.1, exon 1 of 1) transcribed_processed_pseudogene-exon (ENSMUSG00000087052.1, exon 1 of 1) 730 ENSMUSG00000087052.1 ENSMUSG00000087052 ENSMUST00000144982 Gm8093 transcribed_processed_pseudogene Interval_153199 chr7 142354825 142355032 + 0 NA TTS (ENSMUSG00000045777.14) protein_coding-TTS (ENSMUSG00000045777.14) 17341 ENSMUSG00000045777.14 ENSMUSG00000045777 ENSMUST00000123543 Ifitm10 protein_coding Interval_100996 chr2 174049473 174050186 + 0 NA Intergenic Intergenic -2556 ENSMUSG00000082519.1 ENSMUSG00000082519 ENSMUST00000120334 Vamp7-ps processed_pseudogene Interval_20074 chr10 113272208 113272415 + 0 NA Intergenic Intergenic -151873 ENSMUSG00000112767.1 ENSMUSG00000112767 ENSMUST00000218916 Gm47532 lincRNA Interval_27578 chr11 68825525 68826034 + 0 NA intron (ENSMUSG00000018736.14, intron 8 of 8) protein_coding-intron (ENSMUSG00000018736.14, intron 8 of 8) 34217 ENSMUSG00000018736.14 ENSMUSG00000018736 ENSMUST00000127469 Ndel1 protein_coding Interval_92569 chr2 60759648 60759845 + 0 NA intron (ENSMUSG00000026970.16, intron 2 of 5) protein_coding-intron (ENSMUSG00000026970.16, intron 9 of 13) -86020 ENSMUSG00000026971.15 ENSMUSG00000026971 ENSMUST00000142696 Itgb6 protein_coding Interval_35985 chr12 33128950 33129777 + 0 NA intron (ENSMUSG00000052125.16, intron 4 of 4) bidirectional_promoter_lncRNA-intron (ENSMUSG00000052125.16, intron 4 of 5) 17401 ENSMUSG00000084979.1 ENSMUSG00000084979 ENSMUST00000140569 Gm16267 lincRNA Interval_157448 chr8 70432910 70433784 + 0 NA intron (ENSMUSG00000003575.13, intron 1 of 13) protein_coding-intron (ENSMUSG00000003575.13, intron 1 of 13) -2062 ENSMUSG00000003575.13 ENSMUSG00000003575 ENSMUST00000153632 Crtc1 protein_coding Interval_100457 chr2 169107557 169108427 + 0 NA intron (ENSMUSG00000086238.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000086238.1, intron 1 of 1) 1539 ENSMUSG00000086238.1 ENSMUSG00000086238 ENSMUST00000144607 Gm14258 lincRNA Interval_155024 chr8 25770707 25771583 + 0 NA exon (ENSMUSG00000037316.9, exon 3 of 5) protein_coding-exon (ENSMUSG00000037316.9, exon 3 of 5) 6437 ENSMUSG00000037316.9 ENSMUSG00000037316 ENSMUST00000209948 Bag4 protein_coding Interval_43558 chr13 33205082 33205273 + 0 NA Intergenic Intergenic 12218 ENSMUSG00000054266.2 ENSMUSG00000054266 ENSMUST00000067198 Serpinb9d protein_coding Interval_75879 chr17 72522381 72523618 + 0 NA promoter-TSS (ENSMUSG00000117247.1) TEC-promoter-TSS (ENSMUSG00000117247.1) -356 ENSMUSG00000117247.1 ENSMUSG00000117247 ENSMUST00000233448 Gm49923 TEC Interval_41613 chr12 116989314 116989681 + 0 NA intron (ENSMUSG00000056553.14, intron 11 of 22) protein_coding-intron (ENSMUSG00000056553.14, intron 11 of 22) -136395 ENSMUSG00000113795.1 ENSMUSG00000113795 ENSMUST00000220994 Gm48119 processed_pseudogene Interval_134522 chr6 29321115 29321330 + 0 NA intron (ENSMUSG00000039742.15, intron 2 of 6) protein_coding-intron (ENSMUSG00000039742.15, intron 2 of 6) 1984 ENSMUSG00000090692.1 ENSMUSG00000090692 ENSMUST00000171782 Gm17172 antisense Interval_154967 chr8 25343235 25343825 + 0 NA Intergenic Intergenic -37260 ENSMUSG00000110140.1 ENSMUSG00000110140 ENSMUST00000209774 5430421F17Rik lincRNA Interval_105637 chr3 88281211 88282237 + 0 NA intron (ENSMUSG00000103766.5, intron 1 of 7) protein_coding-intron (ENSMUSG00000103766.5, intron 1 of 7) 3029 ENSMUSG00000103574.1 ENSMUSG00000103574 ENSMUST00000195161 Gm37116 processed_pseudogene Interval_9068 chr1 153384929 153387391 + 0 NA Intergenic Intergenic 28073 ENSMUSG00000073538.10 ENSMUSG00000073538 ENSMUST00000188717 E330020D12Rik processed_transcript Interval_4740 chr1 78196402 78197513 + 0 NA promoter-TSS (ENSMUSG00000004872.15) protein_coding-promoter-TSS (ENSMUSG00000004872.15) 156 ENSMUSG00000004872.15 ENSMUSG00000004872 ENSMUST00000172555 Pax3 protein_coding Interval_166169 chr9 57220039 57220832 + 0 NA Intergenic Intergenic -16121 ENSMUSG00000070298.6 ENSMUSG00000070298 ENSMUST00000093837 Trcg1 protein_coding Interval_81031 chr18 53160753 53162176 + 0 NA Intergenic Intergenic -14925 ENSMUSG00000034484.8 ENSMUSG00000034484 ENSMUST00000236111 Snx2 protein_coding Interval_157777 chr8 73018124 73019559 + 0 NA intron (ENSMUSG00000004383.18, intron 7 of 15) protein_coding-intron (ENSMUSG00000004383.18, intron 6 of 14) 2329 ENSMUSG00000093140.1 ENSMUSG00000093140 ENSMUST00000175399 Mir28b miRNA Interval_21247 chr10 127445031 127445329 + 0 NA TTS (ENSMUSG00000025404.15) protein_coding-TTS (ENSMUSG00000025404.15) -14355 ENSMUSG00000025404.15 ENSMUSG00000025404 ENSMUST00000171426 R3hdm2 protein_coding Interval_25713 chr11 50990522 50990879 + 0 NA Intergenic Intergenic -1091 ENSMUSG00000083825.2 ENSMUSG00000083825 ENSMUST00000121306 Olfr1376-ps1 unprocessed_pseudogene Interval_145010 chr7 29403303 29405840 + 0 NA intron (ENSMUSG00000030583.16, intron 3 of 22) protein_coding-intron (ENSMUSG00000030583.16, intron 3 of 22) -26966 ENSMUSG00000030583.16 ENSMUSG00000030583 ENSMUST00000183085 Sipa1l3 protein_coding Interval_81932 chr18 65966328 65966687 + 0 NA intron (ENSMUSG00000024519.6, intron 1 of 1) protein_coding-intron (ENSMUSG00000024519.6, intron 2 of 2) 1175 ENSMUSG00000024519.6 ENSMUSG00000024519 ENSMUST00000236894 Cplx4 protein_coding Interval_151275 chr7 120601557 120601783 + 0 NA intron (ENSMUSG00000109113.1, intron 3 of 8) lincRNA-intron (ENSMUSG00000109113.1, intron 3 of 8) 4045 ENSMUSG00000044141.8 ENSMUSG00000044141 ENSMUST00000123576 E130201H02Rik processed_pseudogene Interval_32473 chr11 107730860 107731199 + 0 NA Intergenic Intergenic 11050 ENSMUSG00000020723.3 ENSMUSG00000020723 ENSMUST00000134076 Cacng4 protein_coding Interval_36406 chr12 43886143 43886717 + 0 NA Intergenic Intergenic -42237 ENSMUSG00000112258.1 ENSMUSG00000112258 ENSMUST00000217666 Gm10165 lincRNA Interval_65627 chr16 24367232 24368081 + 0 NA intron (ENSMUSG00000115852.2, intron 2 of 4) transcribed_processed_pseudogene-intron (ENSMUSG00000115852.2, intron 2 of 4) 2576 ENSMUSG00000116785.1 ENSMUSG00000116785 ENSMUST00000231939 Gm41434 processed_pseudogene Interval_174808 chrX 167207849 167210503 + 0 NA promoter-TSS (ENSMUSG00000049775.16) protein_coding-promoter-TSS (ENSMUSG00000049775.16) -27 ENSMUSG00000049775.16 ENSMUSG00000049775 ENSMUST00000112175 Tmsb4x protein_coding Interval_142728 chr6 145187297 145187665 + 0 NA exon (ENSMUSG00000086863.1, exon 2 of 2) antisense-exon (ENSMUSG00000086863.1, exon 2 of 2) 5206 ENSMUSG00000086863.1 ENSMUSG00000086863 ENSMUST00000141307 Gm15543 antisense Interval_27750 chr11 69777450 69777646 + 0 NA exon (ENSMUSG00000018750.14, exon 4 of 4) protein_coding-exon (ENSMUSG00000018750.14, exon 4 of 4) 11532 ENSMUSG00000018750.14 ENSMUSG00000018750 ENSMUST00000108638 Zbtb4 protein_coding Interval_19459 chr10 99595215 99596335 + 0 NA Intergenic Intergenic -13396 ENSMUSG00000111962.1 ENSMUSG00000111962 ENSMUST00000218263 Gm20110 lincRNA Interval_173490 chrX 95658166 95658915 + 0 NA promoter-TSS (ENSMUSG00000035062.13) protein_coding-promoter-TSS (ENSMUSG00000035062.13) -132 ENSMUSG00000035062.13 ENSMUSG00000035062 ENSMUST00000044382 Zc4h2 protein_coding Interval_143426 chr7 6696071 6696871 + 0 NA promoter-TSS (ENSMUSG00000002266.17) protein_coding-promoter-TSS (ENSMUSG00000002266.17) -7799 ENSMUSG00000002266.17 ENSMUSG00000002266 ENSMUST00000213399 Zim1 protein_coding Interval_84247 chr19 9007905 9008125 + 0 NA exon (ENSMUSG00000069833.13, exon 5 of 5) protein_coding-exon (ENSMUSG00000069833.13, exon 5 of 5) 18731 ENSMUSG00000069833.13 ENSMUSG00000069833 ENSMUST00000237033 Ahnak protein_coding Interval_39564 chr12 90740427 90741423 + 0 NA intron (ENSMUSG00000097157.2, intron 1 of 5) bidirectional_promoter_lncRNA-intron (ENSMUSG00000097157.2, intron 1 of 3) -2487 ENSMUSG00000007682.6 ENSMUSG00000007682 ENSMUST00000082432 Dio2 protein_coding Interval_31919 chr11 103864164 103865892 + 0 NA intron (ENSMUSG00000034187.18, intron 1 of 2) protein_coding-intron (ENSMUSG00000034187.18, intron 12 of 20) 7294 ENSMUSG00000034187.18 ENSMUSG00000034187 ENSMUST00000149642 Nsf protein_coding Interval_41808 chr12 119773648 119774760 + 0 NA Intergenic Intergenic 102438 ENSMUSG00000114137.1 ENSMUSG00000114137 ENSMUST00000222158 Gm48685 unprocessed_pseudogene Interval_89981 chr2 27037054 27037373 + 0 NA promoter-TSS (ENSMUSG00000087364.1) protein_coding-promoter-TSS (ENSMUSG00000087364.1) -72 ENSMUSG00000087364.1 ENSMUSG00000087364 ENSMUST00000149378 Gm13398 protein_coding Interval_171471 chr9 118592533 118593158 + 0 NA Intergenic Intergenic -2650 ENSMUSG00000110676.1 ENSMUSG00000110676 ENSMUST00000212679 Gm45897 lincRNA Interval_59262 chr15 50267430 50267666 + 0 NA Intergenic Intergenic -19350 ENSMUSG00000115478.1 ENSMUSG00000115478 ENSMUST00000227182 Gm49198 lincRNA Interval_143235 chr7 4668096 4668805 + 0 NA intron (ENSMUSG00000063802.5, intron 4 of 5) protein_coding-intron (ENSMUSG00000063802.5, intron 4 of 7) 9790 ENSMUSG00000108477.1 ENSMUSG00000108477 ENSMUST00000205812 Gm44878 TEC Interval_90849 chr2 32954747 32955030 + 0 NA intron (ENSMUSG00000026792.16, intron 6 of 6) protein_coding-intron (ENSMUSG00000026792.16, intron 6 of 24) -6841 ENSMUSG00000038900.17 ENSMUSG00000038900 ENSMUST00000144644 Rpl12 protein_coding Interval_166289 chr9 58085069 58085843 + 0 NA TTS (ENSMUSG00000037716.15) protein_coding-TTS (ENSMUSG00000037716.15) -32359 ENSMUSG00000085753.1 ENSMUSG00000085753 ENSMUST00000131007 Gm16131 antisense Interval_112596 chr4 43471097 43471292 + 0 NA Intergenic Intergenic 12028 ENSMUSG00000028460.6 ENSMUSG00000028460 ENSMUST00000123526 Sit1 protein_coding Interval_91265 chr2 37089583 37090324 + 0 NA promoter-TSS (ENSMUSG00000075378.2) protein_coding-promoter-TSS (ENSMUSG00000075378.2) -728 ENSMUSG00000075378.2 ENSMUSG00000075378 ENSMUST00000100145 Olfr361 protein_coding Interval_59537 chr15 55120774 55121904 + 0 NA intron (ENSMUSG00000022419.16, intron 1 of 8) protein_coding-intron (ENSMUSG00000022419.16, intron 1 of 8) -7662 ENSMUSG00000053749.12 ENSMUSG00000053749 ENSMUST00000137301 Gm9920 processed_transcript Interval_113098 chr4 48168614 48169283 + 0 NA intron (ENSMUSG00000061455.13, intron 5 of 10) protein_coding-intron (ENSMUSG00000061455.13, intron 7 of 8) 44025 ENSMUSG00000061455.13 ENSMUSG00000061455 ENSMUST00000064765 Stx17 protein_coding Interval_144305 chr7 24399180 24400294 + 0 NA promoter-TSS (ENSMUSG00000002210.11) protein_coding-promoter-TSS (ENSMUSG00000002210.11) -14996 ENSMUSG00000002210.11 ENSMUSG00000002210 ENSMUST00000146686 Smg9 protein_coding Interval_19309 chr10 96522279 96522466 + 0 NA intron (ENSMUSG00000112354.1, intron 2 of 2) lincRNA-intron (ENSMUSG00000112264.1, intron 1 of 1) 1610 ENSMUSG00000112264.1 ENSMUSG00000112264 ENSMUST00000219016 Gm48505 lincRNA Interval_30453 chr11 94473134 94474807 + 0 NA promoter-TSS (ENSMUSG00000020866.17) protein_coding-promoter-TSS (ENSMUSG00000020866.17) -329 ENSMUSG00000020866.17 ENSMUSG00000020866 ENSMUST00000152811 Cacna1g protein_coding Interval_87540 chr19 53329239 53330785 + 0 NA promoter-TSS (ENSMUSG00000025025.14) protein_coding-promoter-TSS (ENSMUSG00000025025.14) 551 ENSMUSG00000025025.14 ENSMUSG00000025025 ENSMUST00000237295 Mxi1 protein_coding Interval_107097 chr3 103501986 103502333 + 0 NA Intergenic Intergenic -56359 ENSMUSG00000065029.1 ENSMUSG00000065029 ENSMUST00000083095 Gm25199 snRNA Interval_3104 chr1 53362263 53362482 + 0 NA promoter-TSS (ENSMUSG00000099450.1) processed_pseudogene-promoter-TSS (ENSMUSG00000099450.1) 99 ENSMUSG00000100267.1 ENSMUSG00000100267 ENSMUST00000189678 Gm28779 processed_pseudogene Interval_10131 chr1 165985428 165986282 + 0 NA intron (ENSMUSG00000026565.18, intron 1 of 6) protein_coding-intron (ENSMUSG00000026565.18, intron 1 of 14) -17105 ENSMUSG00000097196.2 ENSMUSG00000097196 ENSMUST00000181378 Gm26665 lincRNA Interval_102141 chr3 18524390 18524754 + 0 NA Intergenic Intergenic -9303 ENSMUSG00000040217.7 ENSMUSG00000040217 ENSMUST00000069626 Gm6369 processed_pseudogene Interval_7818 chr1 133891569 133891858 + 0 NA Intergenic Intergenic -14818 ENSMUSG00000090208.1 ENSMUSG00000090208 ENSMUST00000160564 Gm15851 antisense Interval_56515 chr14 119714155 119714351 + 0 NA intron (ENSMUSG00000053465.6, intron 1 of 1) protein_coding-intron (ENSMUSG00000053465.6, intron 1 of 1) -34972 ENSMUSG00000100274.1 ENSMUSG00000100274 ENSMUST00000188582 1700006F04Rik sense_intronic Interval_8329 chr1 137378282 137379373 + 0 NA Intergenic Intergenic -11580 ENSMUSG00000088164.1 ENSMUSG00000088164 ENSMUST00000157539 Gm23534 snoRNA Interval_5383 chr1 88318368 88319230 + 0 NA promoter-TSS (ENSMUSG00000036251.16) protein_coding-promoter-TSS (ENSMUSG00000036251.16) -114 ENSMUSG00000036251.16 ENSMUSG00000036251 ENSMUST00000171176 Trpm8 protein_coding Interval_93129 chr2 70459037 70459380 + 0 NA exon (ENSMUSG00000047965.9, exon 1 of 1) processed_pseudogene-exon (ENSMUSG00000047965.9, exon 1 of 1) 226 ENSMUSG00000047965.9 ENSMUSG00000047965 ENSMUST00000140507 Rpl9-ps7 processed_pseudogene Interval_30366 chr11 93911094 93911775 + 0 NA promoter-TSS (ENSMUSG00000059474.13) protein_coding-promoter-TSS (ENSMUSG00000059474.13) -14106 ENSMUSG00000059474.13 ENSMUSG00000059474 ENSMUST00000155841 Mbtd1 protein_coding Interval_8680 chr1 147418444 147418640 + 0 NA Intergenic Intergenic 87500 ENSMUSG00000100380.1 ENSMUSG00000100380 ENSMUST00000188981 Gm17867 unprocessed_pseudogene Interval_20362 chr10 117118317 117119197 + 0 NA intron (ENSMUSG00000020170.4, intron 1 of 5) protein_coding-intron (ENSMUSG00000020170.4, intron 1 of 9) 29738 ENSMUSG00000020170.4 ENSMUSG00000020170 ENSMUST00000219104 Frs2 protein_coding Interval_99373 chr2 160396769 160398309 + 0 NA Intergenic Intergenic -30474 ENSMUSG00000074622.4 ENSMUSG00000074622 ENSMUST00000099126 Mafb protein_coding Interval_133713 chr6 9392406 9392619 + 0 NA Intergenic Intergenic 245746 ENSMUSG00000107851.1 ENSMUSG00000107851 ENSMUST00000203681 Gm35736 processed_pseudogene Interval_26095 chr11 54122720 54123148 + 0 NA intron (ENSMUSG00000018906.14, intron 8 of 14) protein_coding-intron (ENSMUSG00000018906.14, intron 9 of 15) 21959 ENSMUSG00000018906.14 ENSMUSG00000018906 ENSMUST00000139315 P4ha2 protein_coding Interval_5667 chr1 90734330 90734547 + 0 NA Intergenic Intergenic 59277 ENSMUSG00000056128.3 ENSMUSG00000056128 ENSMUST00000070048 Gm9991 lincRNA Interval_16708 chr10 67125988 67127715 + 0 NA promoter-TSS (ENSMUSG00000037876.17) protein_coding-promoter-TSS (ENSMUSG00000037876.17) -58897 ENSMUSG00000037876.17 ENSMUSG00000037876 ENSMUST00000173236 Jmjd1c protein_coding Interval_131148 chr5 135434975 135435833 + 0 NA promoter-TSS (ENSMUSG00000039959.13) protein_coding-promoter-TSS (ENSMUSG00000039959.13) 30523 ENSMUSG00000039959.13 ENSMUSG00000039959 ENSMUST00000202044 Hip1 protein_coding Interval_32694 chr11 109703701 109704771 + 0 NA intron (ENSMUSG00000020614.13, intron 1 of 11) protein_coding-intron (ENSMUSG00000020614.13, intron 1 of 10) 18043 ENSMUSG00000020614.13 ENSMUSG00000020614 ENSMUST00000144972 Fam20a protein_coding Interval_157310 chr8 69192837 69194062 + 0 NA Intergenic Intergenic -11219 ENSMUSG00000036306.13 ENSMUSG00000036306 ENSMUST00000184961 Lzts1 protein_coding Interval_104042 chr3 57628189 57628935 + 0 NA Intergenic Intergenic -2805 ENSMUSG00000097339.5 ENSMUSG00000097339 ENSMUST00000199419 Gm26671 lincRNA Interval_44088 chr13 40795322 40795796 + 0 NA Intergenic Intergenic 17519 ENSMUSG00000090475.1 ENSMUSG00000090475 ENSMUST00000164699 Gm6245 processed_pseudogene Interval_82891 chr18 78431207 78431400 + 0 NA intron (ENSMUSG00000024552.16, intron 2 of 21) protein_coding-intron (ENSMUSG00000024552.16, intron 2 of 11) -45575 ENSMUSG00000117661.1 ENSMUSG00000117661 ENSMUST00000235470 4931439C15Rik antisense Interval_174795 chrX 166654993 166655559 + 0 NA Intergenic Intergenic -6749 ENSMUSG00000086860.1 ENSMUSG00000086860 ENSMUST00000135086 Gm1720 lincRNA Interval_33663 chr11 117797748 117798071 + 0 NA intron (ENSMUSG00000025573.4, intron 1 of 5) protein_coding-intron (ENSMUSG00000025573.4, intron 1 of 5) 249 ENSMUSG00000025573.4 ENSMUSG00000025573 ENSMUST00000106331 6030468B19Rik protein_coding Interval_153924 chr8 11214990 11215945 + 0 NA intron (ENSMUSG00000031502.11, intron 40 of 52) protein_coding-intron (ENSMUSG00000031502.11, intron 40 of 51) 27712 ENSMUSG00000085573.1 ENSMUSG00000085573 ENSMUST00000151014 Gm15418 antisense Interval_133666 chr6 8274402 8275334 + 0 NA intron (ENSMUSG00000089862.8, intron 2 of 2) protein_coding-intron (ENSMUSG00000089862.8, intron 1 of 2) 15418 ENSMUSG00000107705.1 ENSMUSG00000107705 ENSMUST00000162564 Gm45062 protein_coding Interval_113560 chr4 56714999 56715683 + 0 NA Intergenic Intergenic -24729 ENSMUSG00000096930.1 ENSMUSG00000096930 ENSMUST00000181745 Gm26657 protein_coding Interval_114858 chr4 86438620 86438843 + 0 NA Intergenic Intergenic 3610 ENSMUSG00000083272.1 ENSMUSG00000083272 ENSMUST00000118478 Gm12550 processed_pseudogene Interval_107352 chr3 106461832 106462096 + 0 NA Intergenic Intergenic -16319 ENSMUSG00000104350.1 ENSMUSG00000104350 ENSMUST00000191737 Gm38244 TEC Interval_108991 chr3 134136928 134137209 + 0 NA intron (ENSMUSG00000097911.2, intron 1 of 2) antisense-intron (ENSMUSG00000097911.2, intron 1 of 2) 10040 ENSMUSG00000106130.1 ENSMUSG00000106130 ENSMUST00000197960 Gm44361 miRNA Interval_48424 chr13 98925726 98927173 + 0 NA promoter-TSS (ENSMUSG00000009470.17) protein_coding-promoter-TSS (ENSMUSG00000009470.17) 19467 ENSMUSG00000114569.1 ENSMUSG00000114569 ENSMUST00000223733 Gm35215 lincRNA Interval_104415 chr3 65452844 65453364 + 0 NA Intergenic Intergenic 41931 ENSMUSG00000103513.1 ENSMUSG00000103513 ENSMUST00000193896 Gm34780 TEC Interval_167166 chr9 65768695 65768946 + 0 NA intron (ENSMUSG00000040524.9, intron 2 of 9) protein_coding-intron (ENSMUSG00000040524.9, intron 2 of 9) 29092 ENSMUSG00000040524.9 ENSMUSG00000040524 ENSMUST00000160747 Zfp609 protein_coding Interval_106120 chr3 93397652 93397966 + 0 NA exon (ENSMUSG00000041984.2, exon 3 of 3) protein_coding-exon (ENSMUSG00000041984.2, exon 3 of 3) 4110 ENSMUSG00000041984.2 ENSMUSG00000041984 ENSMUST00000045912 Rptn protein_coding Interval_119448 chr4 137683316 137683731 + 0 NA intron (ENSMUSG00000041351.16, intron 2 of 10) protein_coding-intron (ENSMUSG00000041351.16, intron 2 of 24) 18769 ENSMUSG00000041351.16 ENSMUSG00000041351 ENSMUST00000144059 Rap1gap protein_coding Interval_114893 chr4 86762877 86763079 + 0 NA intron (ENSMUSG00000038024.17, intron 1 of 32) protein_coding-intron (ENSMUSG00000038024.17, intron 1 of 25) -11277 ENSMUSG00000038024.17 ENSMUSG00000038024 ENSMUST00000128710 Dennd4c protein_coding Interval_75888 chr17 72795685 72795979 + 0 NA Intergenic Intergenic -41704 ENSMUSG00000039770.6 ENSMUSG00000039770 ENSMUST00000233662 Ypel5 protein_coding Interval_114277 chr4 70445587 70445879 + 0 NA intron (ENSMUSG00000039270.9, intron 4 of 5) protein_coding-intron (ENSMUSG00000039270.9, intron 4 of 5) -32810 ENSMUSG00000088367.1 ENSMUSG00000088367 ENSMUST00000157742 Gm26320 misc_RNA Interval_17585 chr10 77999865 78000532 + 0 NA promoter-TSS (ENSMUSG00000020277.10) protein_coding-promoter-TSS (ENSMUSG00000020277.10) 9538 ENSMUSG00000020277.10 ENSMUSG00000020277 ENSMUST00000220304 Pfkl protein_coding Interval_100449 chr2 169061451 169062005 + 0 NA TTS (ENSMUSG00000080415.1) miRNA-TTS (ENSMUSG00000080415.1) 608 ENSMUSG00000080415.1 ENSMUSG00000080415 ENSMUST00000116765 Gm26469 miRNA Interval_58120 chr15 28079142 28079537 + 0 NA intron (ENSMUSG00000115773.1, intron 1 of 5) lincRNA-intron (ENSMUSG00000115773.1, intron 1 of 5) 38330 ENSMUSG00000115058.1 ENSMUSG00000115058 ENSMUST00000227963 Gm19883 processed_pseudogene Interval_42288 chr13 11825709 11826026 + 0 NA intron (ENSMUSG00000021313.16, intron 2 of 3) protein_coding-intron (ENSMUSG00000021313.16, intron 15 of 104) -4133 ENSMUSG00000113269.1 ENSMUSG00000113269 ENSMUST00000221204 Gm47494 TEC Interval_92447 chr2 59772359 59773028 + 0 NA TTS (ENSMUSG00000035168.16) protein_coding-TTS (ENSMUSG00000035168.16) -33375 ENSMUSG00000035168.16 ENSMUSG00000035168 ENSMUST00000147650 Tanc1 protein_coding Interval_4386 chr1 73668787 73669280 + 0 NA intron (ENSMUSG00000100301.6, intron 2 of 3) lincRNA-intron (ENSMUSG00000100301.6, intron 7 of 8) 74914 ENSMUSG00000100301.6 ENSMUSG00000100301 ENSMUST00000189514 6030407O03Rik lincRNA Interval_56681 chr14 121345944 121346896 + 0 NA intron (ENSMUSG00000063410.8, intron 1 of 1) protein_coding-intron (ENSMUSG00000063410.8, intron 1 of 10) 33591 ENSMUSG00000063410.8 ENSMUSG00000063410 ENSMUST00000226158 Stk24 protein_coding Interval_124079 chr5 38114676 38116557 + 0 NA intron (ENSMUSG00000029125.14, intron 1 of 2) protein_coding-intron (ENSMUSG00000029125.14, intron 5 of 10) 20481 ENSMUSG00000107276.1 ENSMUSG00000107276 ENSMUST00000202512 Gm42858 TEC Interval_25190 chr11 45007428 45009150 + 0 NA TTS (ENSMUSG00000057098.14) protein_coding-TTS (ENSMUSG00000057098.14) 108639 ENSMUSG00000084773.1 ENSMUSG00000084773 ENSMUST00000143869 Gm12159 lincRNA Interval_6166 chr1 98589896 98590148 + 0 NA exon (ENSMUSG00000100009.6, exon 1 of 1) lincRNA-exon (ENSMUSG00000100009.6, exon 1 of 1) 505 ENSMUSG00000100009.6 ENSMUSG00000100009 ENSMUST00000190991 Gm7967 lincRNA Interval_102560 chr3 27760905 27761371 + 0 NA Intergenic Intergenic -50740 ENSMUSG00000039286.12 ENSMUSG00000039286 ENSMUST00000193779 Fndc3b protein_coding Interval_120852 chr4 151044205 151045383 + 0 NA promoter-TSS (ENSMUSG00000028957.12) protein_coding-promoter-TSS (ENSMUSG00000028957.12) 13152 ENSMUSG00000028955.3 ENSMUSG00000028955 ENSMUST00000125205 Vamp3 protein_coding Interval_168266 chr9 78338812 78339039 + 0 NA promoter-TSS (ENSMUSG00000057933.10) protein_coding-promoter-TSS (ENSMUSG00000057933.10) -173 ENSMUSG00000057933.10 ENSMUSG00000057933 ENSMUST00000140498 Gsta2 protein_coding Interval_80576 chr18 44390845 44391342 + 0 NA intron (ENSMUSG00000024472.9, intron 1 of 1) protein_coding-intron (ENSMUSG00000024472.9, intron 1 of 10) 10591 ENSMUSG00000024472.9 ENSMUSG00000024472 ENSMUST00000025350 Dcp2 protein_coding Interval_44971 chr13 51052332 51053292 + 0 NA Intergenic Intergenic 38726 ENSMUSG00000084609.2 ENSMUSG00000084609 ENSMUST00000122660 Gm22199 misc_RNA Interval_154322 chr8 14429092 14429296 + 0 NA intron (ENSMUSG00000047495.15, intron 1 of 10) protein_coding-intron (ENSMUSG00000047495.15, intron 2 of 14) 79016 ENSMUSG00000106670.1 ENSMUSG00000106670 ENSMUST00000199602 Gm44347 miRNA Interval_11880 chr1 186704271 186706207 + 0 NA promoter-TSS (ENSMUSG00000100393.1) antisense-promoter-TSS (ENSMUSG00000100393.1) -456 ENSMUSG00000100393.1 ENSMUSG00000100393 ENSMUST00000189481 Gm29491 antisense Interval_134860 chr6 32749788 32750253 + 0 NA Intergenic Intergenic 2268 ENSMUSG00000106873.1 ENSMUSG00000106873 ENSMUST00000202626 BC049739 lincRNA Interval_44883 chr13 49355626 49356286 + 0 NA intron (ENSMUSG00000037933.16, intron 1 of 7) protein_coding-intron (ENSMUSG00000037933.16, intron 1 of 6) -27133 ENSMUSG00000037933.16 ENSMUSG00000037933 ENSMUST00000220723 Bicd2 protein_coding Interval_29271 chr11 82518608 82519108 + 0 NA Intergenic Intergenic 77321 ENSMUSG00000065201.1 ENSMUSG00000065201 ENSMUST00000083267 Gm24612 snRNA Interval_119812 chr4 140147517 140148624 + 0 NA intron (ENSMUSG00000040972.8, intron 2 of 9) protein_coding-intron (ENSMUSG00000040972.8, intron 2 of 9) 5197 ENSMUSG00000086164.1 ENSMUSG00000086164 ENSMUST00000137283 Gm13029 antisense Interval_134716 chr6 30692934 30694097 + 0 NA promoter-TSS (ENSMUSG00000029790.16) protein_coding-promoter-TSS (ENSMUSG00000029790.16) 161 ENSMUSG00000029790.16 ENSMUSG00000029790 ENSMUST00000115130 Cep41 protein_coding Interval_137160 chr6 68668261 68668843 + 0 NA Intergenic Intergenic -2610 ENSMUSG00000106381.1 ENSMUSG00000106381 ENSMUST00000200279 Igkv2-95-1 IG_V_pseudogene Interval_82114 chr18 67810424 67811541 + 0 NA intron (ENSMUSG00000024542.9, intron 6 of 15) protein_coding-intron (ENSMUSG00000024542.9, intron 6 of 45) -11039 ENSMUSG00000118134.1 ENSMUSG00000118134 ENSMUST00000237968 4930549G23Rik antisense Interval_30554 chr11 95084262 95085201 + 0 NA Intergenic Intergenic -7934 ENSMUSG00000001507.16 ENSMUSG00000001507 ENSMUST00000145671 Itga3 protein_coding Interval_139323 chr6 98843989 98844309 + 0 NA Intergenic Intergenic 16666 ENSMUSG00000107514.1 ENSMUSG00000107514 ENSMUST00000203192 Gm32381 processed_pseudogene Interval_52681 chr14 48536493 48538005 + 0 NA promoter-TSS (ENSMUSG00000115725.1) lincRNA-promoter-TSS (ENSMUSG00000115725.1) -742 ENSMUSG00000115725.1 ENSMUSG00000115725 ENSMUST00000227361 4930572G02Rik lincRNA Interval_9027 chr1 153172136 153173383 + 0 NA intron (ENSMUSG00000026479.13, intron 2 of 3) protein_coding-intron (ENSMUSG00000026479.13, intron 2 of 23) -45525 ENSMUSG00000026479.13 ENSMUSG00000026479 ENSMUST00000188831 Lamc2 protein_coding Interval_37127 chr12 58698243 58698608 + 0 NA Intergenic Intergenic -65481 ENSMUSG00000112487.1 ENSMUSG00000112487 ENSMUST00000219517 Gm18873 processed_pseudogene Interval_55164 chr14 78827362 78827820 + 0 NA Intergenic Intergenic 3679 ENSMUSG00000115290.1 ENSMUSG00000115290 ENSMUST00000226127 Gm19098 processed_pseudogene Interval_28256 chr11 74713256 74713971 + 0 NA intron (ENSMUSG00000020745.15, intron 1 of 9) protein_coding-intron (ENSMUSG00000020745.15, intron 1 of 10) 10705 ENSMUSG00000020745.15 ENSMUSG00000020745 ENSMUST00000155493 Pafah1b1 protein_coding Interval_9353 chr1 156522043 156524304 + 0 NA promoter-TSS (ENSMUSG00000101523.2) processed_pseudogene-promoter-TSS (ENSMUSG00000101523.2) -839 ENSMUSG00000101523.2 ENSMUSG00000101523 ENSMUST00000190422 Csnk2a3 processed_pseudogene Interval_73789 chr17 43666643 43667467 + 0 NA promoter-TSS (ENSMUSG00000023963.10) protein_coding-promoter-TSS (ENSMUSG00000023963.10) 77 ENSMUSG00000023912.10 ENSMUSG00000023912 ENSMUST00000233442 Slc25a27 protein_coding Interval_48878 chr13 104246421 104246671 + 0 NA intron (ENSMUSG00000021714.15, intron 9 of 9) protein_coding-intron (ENSMUSG00000021714.15, intron 9 of 9) 10671 ENSMUSG00000021714.15 ENSMUSG00000021714 ENSMUST00000224098 Cenpk protein_coding Interval_172035 chr9 123731042 123731979 + 0 NA intron (ENSMUSG00000029530.16, intron 1 of 2) protein_coding-intron (ENSMUSG00000029530.16, intron 1 of 2) -19158 ENSMUSG00000025245.14 ENSMUSG00000025245 ENSMUST00000165799 Lztfl1 protein_coding Interval_143835 chr7 16629596 16630080 + 0 NA intron (ENSMUSG00000100583.6, intron 2 of 2) antisense-intron (ENSMUSG00000100583.6, intron 2 of 2) -5161 ENSMUSG00000064745.1 ENSMUSG00000064745 ENSMUST00000082811 Gm24708 snRNA Interval_136916 chr6 64480794 64481241 + 0 NA intron (ENSMUSG00000071424.10, intron 13 of 15) protein_coding-intron (ENSMUSG00000071424.10, intron 13 of 15) 67369 ENSMUSG00000064775.1 ENSMUSG00000064775 ENSMUST00000082841 Gm25205 snRNA Interval_107859 chr3 116340073 116342787 + 0 NA intron (ENSMUSG00000033502.15, intron 7 of 14) protein_coding-intron (ENSMUSG00000033502.15, intron 7 of 15) -8673 ENSMUSG00000106005.1 ENSMUSG00000106005 ENSMUST00000196669 Gm29151 antisense Interval_22141 chr11 6586848 6587238 + 0 NA intron (ENSMUSG00000000378.15, intron 3 of 4) protein_coding-intron (ENSMUSG00000000378.15, intron 4 of 9) -6005 ENSMUSG00000000378.15 ENSMUSG00000000378 ENSMUST00000161667 Ccm2 protein_coding Interval_2459 chr1 39509730 39509987 + 0 NA Intergenic Intergenic -9675 ENSMUSG00000104827.1 ENSMUSG00000104827 ENSMUST00000197298 Gm24826 snoRNA Interval_3762 chr1 62910741 62911864 + 0 NA Intergenic Intergenic -78932 ENSMUSG00000100426.1 ENSMUSG00000100426 ENSMUST00000189802 Gm4208 lincRNA Interval_563 chr1 7397025 7398661 + 0 NA promoter-TSS (ENSMUSG00000097797.6) lincRNA-promoter-TSS (ENSMUSG00000097797.6) 26 ENSMUSG00000097797.6 ENSMUSG00000097797 ENSMUST00000193428 Gm26901 lincRNA Interval_78892 chr18 21204475 21204852 + 0 NA intron (ENSMUSG00000042680.8, intron 2 of 4) protein_coding-intron (ENSMUSG00000042680.8, intron 2 of 5) 95460 ENSMUSG00000042680.8 ENSMUSG00000042680 ENSMUST00000234115 Garem1 protein_coding Interval_161547 chr8 121116025 121117982 + 0 NA exon (ENSMUSG00000046714.7, exon 1 of 1) protein_coding-exon (ENSMUSG00000046714.7, exon 1 of 1) 832 ENSMUSG00000046714.7 ENSMUSG00000046714 ENSMUST00000054691 Foxc2 protein_coding Interval_142882 chr6 146660824 146661031 + 0 NA intron (ENSMUSG00000085238.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000085238.1, intron 1 of 2) 3709 ENSMUSG00000085238.1 ENSMUSG00000085238 ENSMUST00000146754 4930479D17Rik lincRNA Interval_125188 chr5 65199124 65200212 + 0 NA promoter-TSS (ENSMUSG00000037890.13) protein_coding-promoter-TSS (ENSMUSG00000037890.13) -49 ENSMUSG00000037890.13 ENSMUSG00000037890 ENSMUST00000203554 Wdr19 protein_coding Interval_24227 chr11 31646731 31646982 + 0 NA Intergenic Intergenic 24871 ENSMUSG00000044502.16 ENSMUSG00000044502 ENSMUST00000109415 Bod1 protein_coding Interval_61285 chr15 80563978 80565035 + 0 NA intron (ENSMUSG00000050439.7, intron 1 of 6) protein_coding-intron (ENSMUSG00000050439.7, intron 1 of 6) 650 ENSMUSG00000050439.7 ENSMUSG00000050439 ENSMUST00000229110 Enthd1 protein_coding Interval_144140 chr7 19609406 19611166 + 0 NA intron (ENSMUSG00000002983.17, intron 10 of 10) protein_coding-intron (ENSMUSG00000002983.17, intron 10 of 10) 18962 ENSMUSG00000002983.17 ENSMUSG00000002983 ENSMUST00000141586 Relb protein_coding Interval_39055 chr12 84728012 84728872 + 0 NA Intergenic Intergenic -29688 ENSMUSG00000071234.3 ENSMUSG00000071234 ENSMUST00000221793 Syndig1l protein_coding Interval_80830 chr18 47837888 47838100 + 0 NA Intergenic Intergenic 28431 ENSMUSG00000118110.1 ENSMUSG00000118110 ENSMUST00000237308 Gm50224 processed_pseudogene Interval_8875 chr1 151712474 151713855 + 0 NA intron (ENSMUSG00000026483.13, intron 12 of 13) protein_coding-intron (ENSMUSG00000026483.13, intron 8 of 9) 41854 ENSMUSG00000100594.1 ENSMUSG00000100594 ENSMUST00000186444 2810414N06Rik lincRNA Interval_18291 chr10 84631117 84631443 + 0 NA intron (ENSMUSG00000034453.8, intron 4 of 11) protein_coding-intron (ENSMUSG00000034453.8, intron 4 of 27) -6854 ENSMUSG00000034453.8 ENSMUSG00000034453 ENSMUST00000213543 Polr3b protein_coding Interval_93568 chr2 74500015 74500739 + 0 NA Intergenic Intergenic 54619 ENSMUSG00000009207.15 ENSMUSG00000009207 ENSMUST00000134168 Lnpk protein_coding Interval_13132 chr10 12090621 12090854 + 0 NA Intergenic Intergenic -59297 ENSMUSG00000112775.1 ENSMUSG00000112775 ENSMUST00000220015 Gm48722 lincRNA Interval_166065 chr9 56188864 56189352 + 0 NA Intergenic Intergenic -23631 ENSMUSG00000032324.11 ENSMUSG00000032324 ENSMUST00000216320 Tspan3 protein_coding Interval_15282 chr10 44070884 44071635 + 0 NA intron (ENSMUSG00000019866.15, intron 1 of 21) protein_coding-intron (ENSMUSG00000019866.15, intron 1 of 21) -12481 ENSMUSG00000019866.15 ENSMUSG00000019866 ENSMUST00000239010 Crybg1 protein_coding Interval_98745 chr2 154644932 154647008 + 0 NA exon (ENSMUSG00000059842.12, exon 15 of 15) protein_coding-exon (ENSMUSG00000059842.12, exon 15 of 15) -5735 ENSMUSG00000038467.15 ENSMUSG00000038467 ENSMUST00000136788 Chmp4b protein_coding Interval_85176 chr19 23396123 23396404 + 0 NA intron (ENSMUSG00000033207.7, intron 2 of 12) protein_coding-intron (ENSMUSG00000033207.7, intron 2 of 13) -22080 ENSMUSG00000118092.1 ENSMUSG00000118092 ENSMUST00000235597 Gm50445 lincRNA Interval_37999 chr12 73712124 73713050 + 0 NA intron (ENSMUSG00000021108.18, intron 10 of 14) protein_coding-intron (ENSMUSG00000021108.18, intron 9 of 13) -80896 ENSMUSG00000113321.1 ENSMUSG00000113321 ENSMUST00000222997 Gm8075 lincRNA Interval_160686 chr8 111592161 111593142 + 0 NA intron (ENSMUSG00000033545.14, intron 1 of 1) protein_coding-intron (ENSMUSG00000033545.14, intron 1 of 3) 35936 ENSMUSG00000031958.16 ENSMUSG00000031958 ENSMUST00000070004 Ldhd protein_coding Interval_115227 chr4 94602551 94603728 + 0 NA promoter-TSS (ENSMUSG00000028577.13) protein_coding-promoter-TSS (ENSMUSG00000028577.13) 42 ENSMUSG00000028577.13 ENSMUSG00000028577 ENSMUST00000146118 Plaa protein_coding Interval_98379 chr2 151970185 151971468 + 0 NA exon (ENSMUSG00000027459.16, exon 2 of 2) protein_coding-exon (ENSMUSG00000027459.16, exon 2 of 2) 3109 ENSMUSG00000027459.16 ENSMUSG00000027459 ENSMUST00000109863 Fam110a protein_coding Interval_33622 chr11 117568434 117569385 + 0 NA Intergenic Intergenic -42338 ENSMUSG00000054418.6 ENSMUSG00000054418 ENSMUST00000155384 2900041M22Rik processed_transcript Interval_57018 chr15 4348778 4349590 + 0 NA Intergenic Intergenic -26307 ENSMUSG00000049148.8 ENSMUSG00000049148 ENSMUST00000061925 Plcxd3 protein_coding Interval_82329 chr18 70756048 70756645 + 0 NA Intergenic Intergenic -13116 ENSMUSG00000117735.1 ENSMUSG00000117735 ENSMUST00000236362 Gm18963 processed_pseudogene Interval_13179 chr10 12859278 12859758 + 0 NA intron (ENSMUSG00000019820.11, intron 2 of 17) protein_coding-intron (ENSMUSG00000019820.11, intron 1 of 73) 13430 ENSMUSG00000112698.1 ENSMUSG00000112698 ENSMUST00000219425 Gm7525 processed_pseudogene Interval_68448 chr16 76957791 76958017 + 0 NA intron (ENSMUSG00000100857.2, intron 1 of 7) lincRNA-intron (ENSMUSG00000100857.2, intron 1 of 7) 16288 ENSMUSG00000116807.1 ENSMUSG00000116807 ENSMUST00000231248 Gm7501 processed_pseudogene Interval_144773 chr7 28155086 28155615 + 0 NA exon (ENSMUSG00000078776.9, exon 14 of 20) protein_coding-exon (ENSMUSG00000078776.9, exon 14 of 20) 14277 ENSMUSG00000109015.1 ENSMUSG00000109015 ENSMUST00000207600 Gm31024 TEC Interval_158505 chr8 84130585 84132096 + 0 NA exon (ENSMUSG00000012889.8, exon 3 of 3) protein_coding-exon (ENSMUSG00000012889.8, exon 3 of 3) 3522 ENSMUSG00000012889.8 ENSMUSG00000012889 ENSMUST00000147175 Podnl1 protein_coding Interval_163318 chr9 20830404 20831580 + 0 NA Intergenic Intergenic -8536 ENSMUSG00000118527.1 ENSMUSG00000118527 ENSMUST00000238827 AC170598.1 unprocessed_pseudogene Interval_35282 chr12 19668384 19671059 + 0 NA Intergenic Intergenic 11675 ENSMUSG00000113714.1 ENSMUSG00000113714 ENSMUST00000221889 Gm48635 processed_pseudogene Interval_9840 chr1 162894754 162895222 + 0 NA intron (ENSMUSG00000040170.13, intron 2 of 2) protein_coding-intron (ENSMUSG00000040170.13, intron 2 of 8) -14257 ENSMUSG00000040170.13 ENSMUSG00000040170 ENSMUST00000147617 Fmo2 protein_coding Interval_171602 chr9 119469053 119469567 + 0 NA Intergenic Intergenic 24334 ENSMUSG00000042787.15 ENSMUSG00000042787 ENSMUST00000214462 Exog protein_coding Interval_73207 chr17 35577790 35579290 + 0 NA Intergenic Intergenic 11055 ENSMUSG00000039269.5 ENSMUSG00000039269 ENSMUST00000174246 2300002M23Rik protein_coding Interval_115057 chr4 89034385 89034770 + 0 NA intron (ENSMUSG00000117251.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000117251.1, intron 1 of 1) 4615 ENSMUSG00000117251.1 ENSMUSG00000117251 ENSMUST00000232991 Gm49891 lincRNA Interval_167311 chr9 67226853 67227745 + 0 NA TTS (ENSMUSG00000052698.15) protein_coding-TTS (ENSMUSG00000052698.15) 9427 ENSMUSG00000076379.2 ENSMUSG00000076379 ENSMUST00000102424 Mir190a miRNA Interval_4046 chr1 66816299 66818223 + 0 NA intron (ENSMUSG00000026004.15, intron 1 of 1) protein_coding-intron (ENSMUSG00000026004.15, intron 1 of 13) 285 ENSMUSG00000026004.15 ENSMUSG00000026004 ENSMUST00000189846 Kansl1l protein_coding Interval_154025 chr8 12015682 12015924 + 0 NA Intergenic Intergenic 67464 ENSMUSG00000109995.1 ENSMUSG00000109995 ENSMUST00000209977 B020031H02Rik lincRNA Interval_118124 chr4 129087921 129088171 + 0 NA Intergenic Intergenic -18823 ENSMUSG00000028786.15 ENSMUSG00000028786 ENSMUST00000148979 Tmem54 protein_coding Interval_63660 chr15 102637632 102637918 + 0 NA Intergenic Intergenic 2737 ENSMUSG00000036305.7 ENSMUSG00000036305 ENSMUST00000146505 Rpl39-ps processed_pseudogene Interval_2417 chr1 39157509 39158011 + 0 NA Intergenic Intergenic 29232 ENSMUSG00000098833.1 ENSMUSG00000098833 ENSMUST00000184059 Mir6349 miRNA Interval_93648 chr2 75602876 75603808 + 0 NA Intergenic Intergenic 30040 ENSMUSG00000082152.1 ENSMUSG00000082152 ENSMUST00000119695 Gm13655 processed_pseudogene Interval_5843 chr1 92431106 92432954 + 0 NA Intergenic Intergenic -1498 ENSMUSG00000101522.1 ENSMUSG00000101522 ENSMUST00000190873 Gm7837 processed_pseudogene Interval_47099 chr13 75723082 75723279 + 0 NA intron (ENSMUSG00000001542.7, intron 1 of 3) protein_coding-intron (ENSMUSG00000001542.7, intron 1 of 11) -4099 ENSMUSG00000113041.1 ENSMUSG00000113041 ENSMUST00000222965 Gm48302 sense_intronic Interval_133464 chr6 5385438 5386061 + 0 NA intron (ENSMUSG00000042607.15, intron 1 of 5) protein_coding-intron (ENSMUSG00000042607.15, intron 1 of 5) -4678 ENSMUSG00000042607.15 ENSMUSG00000042607 ENSMUST00000183358 Asb4 protein_coding Interval_60940 chr15 78018212 78018422 + 0 NA intron (ENSMUSG00000019146.2, intron 1 of 3) protein_coding-intron (ENSMUSG00000019146.2, intron 1 of 3) -54545 ENSMUSG00000016554.9 ENSMUSG00000016554 ENSMUST00000229713 Eif3d protein_coding Interval_104639 chr3 69026356 69026696 + 0 NA intron (ENSMUSG00000034349.14, intron 2 of 3) protein_coding-intron (ENSMUSG00000034349.14, intron 13 of 23) 16624 ENSMUSG00000065606.1 ENSMUSG00000065606 ENSMUST00000083672 Mir16-2 miRNA Interval_118607 chr4 132739225 132739680 + 0 NA intron (ENSMUSG00000028885.8, intron 5 of 7) protein_coding-intron (ENSMUSG00000028885.8, intron 5 of 7) -6924 ENSMUSG00000037752.4 ENSMUSG00000037752 ENSMUST00000143642 Xkr8 protein_coding Interval_174797 chrX 166696346 166696810 + 0 NA Intergenic Intergenic 34553 ENSMUSG00000086860.1 ENSMUSG00000086860 ENSMUST00000135086 Gm1720 lincRNA Interval_84168 chr19 8134448 8135526 + 0 NA Intergenic Intergenic -3005 ENSMUSG00000063590.3 ENSMUSG00000063590 ENSMUST00000065651 Slc22a28 protein_coding Interval_127001 chr5 99402314 99402634 + 0 NA intron (ENSMUSG00000089809.9, intron 3 of 16) protein_coding-intron (ENSMUSG00000089809.9, intron 2 of 3) -105915 ENSMUSG00000104753.1 ENSMUSG00000104753 ENSMUST00000196037 Gm35172 lincRNA Interval_60407 chr15 73561770 73562854 + 0 NA intron (ENSMUSG00000036661.14, intron 16 of 23) protein_coding-intron (ENSMUSG00000036661.14, intron 16 of 22) 26650 ENSMUSG00000079020.9 ENSMUSG00000079020 ENSMUST00000150409 Slc45a4 protein_coding Interval_39822 chr12 98733913 98735026 + 0 NA promoter-TSS (ENSMUSG00000021009.15) protein_coding-promoter-TSS (ENSMUSG00000021009.15) -25374 ENSMUSG00000021012.16 ENSMUSG00000021012 ENSMUST00000220660 Zc3h14 protein_coding Interval_17250 chr10 75283770 75284403 + 0 NA intron (ENSMUSG00000033444.14, intron 13 of 15) protein_coding-intron (ENSMUSG00000033444.14, intron 13 of 15) -1051 ENSMUSG00000112116.1 ENSMUSG00000112116 ENSMUST00000218702 Gm46234 processed_pseudogene Interval_98168 chr2 149195871 149196377 + 0 NA Intergenic Intergenic -61153 ENSMUSG00000086963.1 ENSMUSG00000086963 ENSMUST00000135438 Gm14135 lincRNA Interval_116316 chr4 109687870 109688169 + 0 NA intron (ENSMUSG00000010517.7, intron 1 of 18) protein_coding-intron (ENSMUSG00000010517.7, intron 1 of 18) -20830 ENSMUSG00000028551.14 ENSMUSG00000028551 ENSMUST00000097921 Cdkn2c protein_coding Interval_131233 chr5 135926589 135926873 + 0 NA intron (ENSMUSG00000051391.9, intron 1 of 2) protein_coding-intron (ENSMUSG00000051391.9, intron 1 of 1) 7823 ENSMUSG00000051391.9 ENSMUSG00000051391 ENSMUST00000126192 Ywhag protein_coding Interval_82703 chr18 76071805 76072465 + 0 NA intron (ENSMUSG00000044646.15, intron 1 of 2) protein_coding-intron (ENSMUSG00000044646.15, intron 3 of 4) 26336 ENSMUSG00000117797.1 ENSMUSG00000117797 ENSMUST00000236092 2900057B20Rik antisense Interval_96420 chr2 122351711 122352434 + 0 NA intron (ENSMUSG00000033256.14, intron 4 of 4) protein_coding-intron (ENSMUSG00000033256.14, intron 5 of 5) 17065 ENSMUSG00000033256.14 ENSMUSG00000033256 ENSMUST00000135848 Shf protein_coding Interval_159698 chr8 98211796 98212543 + 0 NA Intergenic Intergenic 12494 ENSMUSG00000110194.1 ENSMUSG00000110194 ENSMUST00000210793 Gm7192 processed_pseudogene Interval_103351 chr3 40070293 40070664 + 0 NA Intergenic Intergenic 246901 ENSMUSG00000106948.1 ENSMUSG00000106948 ENSMUST00000202316 Gm42785 processed_pseudogene Interval_169347 chr9 96573081 96573456 + 0 NA intron (ENSMUSG00000032413.12, intron 3 of 3) protein_coding-intron (ENSMUSG00000032413.12, intron 9 of 23) 7338 ENSMUSG00000032413.12 ENSMUSG00000032413 ENSMUST00000190537 Rasa2 protein_coding Interval_8018 chr1 135226356 135226768 + 0 NA Intergenic Intergenic -5433 ENSMUSG00000079139.4 ENSMUSG00000079139 ENSMUST00000110798 Gm4204 processed_pseudogene Interval_172384 chrX 16618020 16620073 + 0 NA promoter-TSS (ENSMUSG00000025037.6) protein_coding-promoter-TSS (ENSMUSG00000025037.6) -652 ENSMUSG00000025037.6 ENSMUSG00000025037 ENSMUST00000026013 Maoa protein_coding Interval_42759 chr13 19136595 19138500 + 0 NA exon (ENSMUSG00000021314.13, exon 18 of 21) protein_coding-exon (ENSMUSG00000021314.13, exon 18 of 21) -40477 ENSMUSG00000076744.2 ENSMUSG00000076744 ENSMUST00000103553 Trgv7 TR_V_gene Interval_6225 chr1 102963012 102963311 + 0 NA Intergenic Intergenic -9613 ENSMUSG00000087908.1 ENSMUSG00000087908 ENSMUST00000157283 Gm22034 snoRNA Interval_89968 chr2 26913970 26914574 + 0 NA TTS (ENSMUSG00000062647.16) protein_coding-TTS (ENSMUSG00000062647.16) 1601 ENSMUSG00000062647.16 ENSMUSG00000062647 ENSMUST00000149339 Rpl7a protein_coding Interval_29419 chr11 83882305 83883478 + 0 NA intron (ENSMUSG00000020679.11, intron 5 of 8) protein_coding-intron (ENSMUSG00000020679.11, intron 5 of 8) 30649 ENSMUSG00000020679.11 ENSMUSG00000020679 ENSMUST00000108113 Hnf1b protein_coding Interval_33566 chr11 117248890 117249157 + 0 NA intron (ENSMUSG00000059248.13, intron 1 of 10) protein_coding-intron (ENSMUSG00000059248.13, intron 2 of 11) 14414 ENSMUSG00000086050.1 ENSMUSG00000086050 ENSMUST00000123882 Gm16045 antisense Interval_8659 chr1 146426589 146427586 + 0 NA exon (ENSMUSG00000099964.6, exon 4 of 4) antisense-exon (ENSMUSG00000099964.6, exon 4 of 4) 6651 ENSMUSG00000090323.2 ENSMUSG00000090323 ENSMUST00000163646 Gm5263 processed_pseudogene Interval_26031 chr11 53582788 53583561 + 0 NA intron (ENSMUSG00000018395.19, intron 5 of 17) protein_coding-intron (ENSMUSG00000018395.19, intron 5 of 16) 15777 ENSMUSG00000018395.19 ENSMUSG00000018395 ENSMUST00000130037 Kif3a protein_coding Interval_74233 chr17 47601673 47602067 + 0 NA exon (ENSMUSG00000023988.8, exon 7 of 7) protein_coding-exon (ENSMUSG00000023988.8, exon 7 of 7) 5546 ENSMUSG00000034165.16 ENSMUSG00000034165 ENSMUST00000183206 Ccnd3 protein_coding Interval_98494 chr2 152769506 152769974 + 0 NA Intergenic Intergenic 3149 ENSMUSG00000093306.1 ENSMUSG00000093306 ENSMUST00000175565 Gm23802 miRNA Interval_88798 chr2 11121038 11122589 + 0 NA Intergenic Intergenic -21551 ENSMUSG00000083900.2 ENSMUSG00000083900 ENSMUST00000121757 Gm13294 processed_pseudogene Interval_123792 chr5 35551818 35553900 + 0 NA exon (ENSMUSG00000106928.1, exon 1 of 1) TEC-exon (ENSMUSG00000106928.1, exon 1 of 1) 1105 ENSMUSG00000106928.1 ENSMUSG00000106928 ENSMUST00000201742 Gm43860 TEC Interval_164437 chr9 37021634 37022635 + 0 NA intron (ENSMUSG00000035934.16, intron 2 of 4) protein_coding-intron (ENSMUSG00000035934.16, intron 2 of 12) -4265 ENSMUSG00000077401.1 ENSMUSG00000077401 ENSMUST00000104213 n-R5s82 rRNA Interval_127388 chr5 103671628 103672404 + 0 NA Intergenic Intergenic 13779 ENSMUSG00000088121.1 ENSMUSG00000088121 ENSMUST00000157496 Gm25721 snRNA Interval_152746 chr7 137130176 137130390 + 0 NA TTS (ENSMUSG00000054612.4) protein_coding-TTS (ENSMUSG00000054612.4) -37537 ENSMUSG00000110174.1 ENSMUSG00000110174 ENSMUST00000211656 Gm45499 processed_pseudogene Interval_17217 chr10 75043740 75044705 + 0 NA intron (ENSMUSG00000020175.15, intron 3 of 10) protein_coding-intron (ENSMUSG00000020175.15, intron 3 of 4) 7133 ENSMUSG00000020175.15 ENSMUSG00000020175 ENSMUST00000151432 Rab36 protein_coding Interval_87115 chr19 46227161 46227527 + 0 NA intron (ENSMUSG00000025224.16, intron 3 of 18) protein_coding-intron (ENSMUSG00000025224.16, intron 3 of 39) -21486 ENSMUSG00000093525.1 ENSMUSG00000093525 ENSMUST00000175770 Gm8974 processed_pseudogene Interval_7041 chr1 123414309 123414594 + 0 NA intron (ENSMUSG00000036815.17, intron 10 of 25) protein_coding-intron (ENSMUSG00000036815.17, intron 10 of 25) -21280 ENSMUSG00000104410.1 ENSMUSG00000104410 ENSMUST00000192713 Gm37066 TEC Interval_164270 chr9 34825174 34825561 + 0 NA intron (ENSMUSG00000032036.15, intron 1 of 15) protein_coding-intron (ENSMUSG00000032036.15, intron 1 of 16) 104142 ENSMUSG00000053889.5 ENSMUSG00000053889 ENSMUST00000066604 Kirrel3os antisense Interval_37093 chr12 57826250 57826458 + 0 NA Intergenic Intergenic -124857 ENSMUSG00000112704.1 ENSMUSG00000112704 ENSMUST00000218373 Gm46329 lincRNA Interval_134690 chr6 30416026 30417243 + 0 NA promoter-TSS (ENSMUSG00000029775.14) protein_coding-promoter-TSS (ENSMUSG00000029775.14) -27136 ENSMUSG00000029775.14 ENSMUSG00000029775 ENSMUST00000150854 Klhdc10 protein_coding Interval_1541 chr1 25178063 25178987 + 0 NA intron (ENSMUSG00000033569.17, intron 19 of 30) protein_coding-intron (ENSMUSG00000033569.17, intron 18 of 29) 27171 ENSMUSG00000033569.17 ENSMUSG00000033569 ENSMUST00000189254 Adgrb3 protein_coding Interval_92094 chr2 53146599 53147340 + 0 NA intron (ENSMUSG00000061136.16, intron 16 of 25) protein_coding-intron (ENSMUSG00000061136.16, intron 16 of 25) 44218 ENSMUSG00000061136.16 ENSMUSG00000061136 ENSMUST00000132031 Prpf40a protein_coding Interval_58673 chr15 36937963 36939372 + 0 NA promoter-TSS (ENSMUSG00000115333.1) lincRNA-promoter-TSS (ENSMUSG00000115333.1) -197 ENSMUSG00000115333.1 ENSMUSG00000115333 ENSMUST00000227227 Gm34590 lincRNA Interval_111987 chr4 33018147 33019153 + 0 NA exon (ENSMUSG00000028278.14, exon 8 of 8) protein_coding-exon (ENSMUSG00000028278.14, exon 8 of 8) 12673 ENSMUSG00000085037.1 ENSMUSG00000085037 ENSMUST00000155691 4933421O10Rik processed_transcript Interval_145196 chr7 30580136 30580333 + 0 NA exon (ENSMUSG00000006307.16, exon 16 of 37) protein_coding-exon (ENSMUSG00000006307.16, exon 16 of 37) -3070 ENSMUSG00000006307.16 ENSMUSG00000006307 ENSMUST00000125372 Kmt2b protein_coding Interval_142266 chr6 140269699 140270138 + 0 NA Intergenic Intergenic 26538 ENSMUSG00000107572.1 ENSMUSG00000107572 ENSMUST00000204425 Gm3961 TEC Interval_83657 chr19 3525199 3525716 + 0 NA intron (ENSMUSG00000024908.15, intron 3 of 12) protein_coding-intron (ENSMUSG00000024908.15, intron 3 of 22) -1647 ENSMUSG00000114302.1 ENSMUSG00000114302 ENSMUST00000223977 Gm48683 antisense Interval_163342 chr9 20967216 20968237 + 0 NA TTS (ENSMUSG00000043895.6) protein_coding-TTS (ENSMUSG00000043895.6) 6252 ENSMUSG00000043895.6 ENSMUSG00000043895 ENSMUST00000214333 S1pr2 protein_coding Interval_26631 chr11 59327417 59328919 + 0 NA intron (ENSMUSG00000000126.11, intron 2 of 3) protein_coding-intron (ENSMUSG00000000126.11, intron 2 of 3) 8978 ENSMUSG00000093572.1 ENSMUSG00000093572 ENSMUST00000177002 Gm24756 miRNA Interval_8152 chr1 136116314 136116756 + 0 NA promoter-TSS (ENSMUSG00000026407.17) protein_coding-promoter-TSS (ENSMUSG00000026407.17) 3287 ENSMUSG00000102717.1 ENSMUSG00000102717 ENSMUST00000194155 Gm37759 antisense Interval_165712 chr9 51305361 51305993 + 0 NA intron (ENSMUSG00000036027.13, intron 2 of 4) protein_coding-intron (ENSMUSG00000036027.13, intron 2 of 4) 23247 ENSMUSG00000036027.13 ENSMUSG00000036027 ENSMUST00000238450 1810046K07Rik protein_coding Interval_137609 chr6 75390428 75391109 + 0 NA Intergenic Intergenic -6746 ENSMUSG00000107918.1 ENSMUSG00000107918 ENSMUST00000204951 Gm8999 processed_pseudogene Interval_123296 chr5 31192554 31193877 + 0 NA promoter-TSS (ENSMUSG00000029146.14) protein_coding-promoter-TSS (ENSMUSG00000029146.14) -207 ENSMUSG00000029145.12 ENSMUSG00000029145 ENSMUST00000201154 Eif2b4 protein_coding Interval_167161 chr9 65716479 65716944 + 0 NA intron (ENSMUSG00000040524.9, intron 3 of 9) protein_coding-intron (ENSMUSG00000040524.9, intron 3 of 9) 46999 ENSMUSG00000040652.16 ENSMUSG00000040652 ENSMUST00000128664 Oaz2 protein_coding Interval_164438 chr9 37030574 37030857 + 0 NA intron (ENSMUSG00000035934.16, intron 2 of 4) protein_coding-intron (ENSMUSG00000035934.16, intron 2 of 12) 4316 ENSMUSG00000077401.1 ENSMUSG00000077401 ENSMUST00000104213 n-R5s82 rRNA Interval_89449 chr2 20726860 20727898 + 0 NA intron (ENSMUSG00000036617.17, intron 1 of 7) protein_coding-intron (ENSMUSG00000036617.17, intron 6 of 18) -14145 ENSMUSG00000086418.1 ENSMUSG00000086418 ENSMUST00000137186 Gm13362 antisense Interval_153721 chr8 5241728 5242506 + 0 NA Intergenic Intergenic 90996 ENSMUSG00000064507.1 ENSMUSG00000064507 ENSMUST00000082573 n-R5s94 rRNA Interval_6876 chr1 120268507 120268796 + 0 NA intron (ENSMUSG00000026389.16, intron 2 of 5) protein_coding-intron (ENSMUSG00000026389.16, intron 1 of 4) -3396 ENSMUSG00000026389.16 ENSMUSG00000026389 ENSMUST00000112643 Steap3 protein_coding Interval_165515 chr9 48928157 48928500 + 0 NA Intergenic Intergenic -17307 ENSMUSG00000032269.8 ENSMUSG00000032269 ENSMUST00000003826 Htr3a protein_coding Interval_69979 chr17 3781925 3782406 + 0 NA Intergenic Intergenic -85904 ENSMUSG00000023802.4 ENSMUSG00000023802 ENSMUST00000115800 Nox3 protein_coding Interval_12135 chr1 189972921 189973468 + 0 NA Intergenic Intergenic -50941 ENSMUSG00000026603.13 ENSMUSG00000026603 ENSMUST00000144452 Smyd2 protein_coding Interval_5247 chr1 86751755 86752289 + 0 NA intron (ENSMUSG00000053333.15, intron 3 of 20) protein_coding-intron (ENSMUSG00000053333.15, intron 3 of 20) 13343 ENSMUSG00000100225.1 ENSMUSG00000100225 ENSMUST00000190273 Gm29097 processed_pseudogene Interval_142279 chr6 140403176 140404190 + 0 NA Intergenic Intergenic -16488 ENSMUSG00000107891.1 ENSMUSG00000107891 ENSMUST00000204085 Gm5051 processed_pseudogene Interval_107911 chr3 116734400 116734658 + 0 NA Intergenic Intergenic -22317 ENSMUSG00000027957.13 ENSMUSG00000027957 ENSMUST00000169530 Slc35a3 protein_coding Interval_59646 chr15 57453355 57453568 + 0 NA intron (ENSMUSG00000022366.12, intron 2 of 11) protein_coding-intron (ENSMUSG00000022366.12, intron 2 of 11) 23477 ENSMUSG00000115117.1 ENSMUSG00000115117 ENSMUST00000227514 Gm18094 processed_pseudogene Interval_51408 chr14 27290747 27291544 + 0 NA intron (ENSMUSG00000021895.10, intron 5 of 13) protein_coding-intron (ENSMUSG00000021895.10, intron 2 of 10) 53083 ENSMUSG00000114888.1 ENSMUSG00000114888 ENSMUST00000225718 Gm49616 TEC Interval_39696 chr12 93170484 93170866 + 0 NA Intergenic Intergenic -172524 ENSMUSG00000113194.1 ENSMUSG00000113194 ENSMUST00000223384 Gm47998 processed_pseudogene Interval_128906 chr5 115986556 115988551 + 0 NA exon (ENSMUSG00000029516.19, exon 1 of 2) protein_coding-exon (ENSMUSG00000029516.19, exon 1 of 2) -21763 ENSMUSG00000085376.1 ENSMUSG00000085376 ENSMUST00000127049 Gm14508 antisense Interval_159597 chr8 95730102 95730543 + 0 NA TTS (ENSMUSG00000036550.16) protein_coding-TTS (ENSMUSG00000036550.16) 13313 ENSMUSG00000031671.11 ENSMUSG00000031671 ENSMUST00000154593 Setd6 protein_coding Interval_109470 chr3 142737483 142738155 + 0 NA promoter-TSS (ENSMUSG00000040213.13) protein_coding-promoter-TSS (ENSMUSG00000040213.13) 6862 ENSMUSG00000086561.1 ENSMUSG00000086561 ENSMUST00000136052 Gm15540 antisense Interval_170356 chr9 107374487 107376041 + 0 NA Intergenic Intergenic -21278 ENSMUSG00000102144.1 ENSMUSG00000102144 ENSMUST00000194547 4930429P21Rik lincRNA Interval_118970 chr4 134779193 134780230 + 0 NA Intergenic Intergenic -29604 ENSMUSG00000037295.7 ENSMUSG00000037295 ENSMUST00000140678 Ldlrap1 protein_coding Interval_81425 chr18 60680175 60681354 + 0 NA Intergenic Intergenic 52386 ENSMUSG00000054008.9 ENSMUSG00000054008 ENSMUST00000237070 Ndst1 protein_coding Interval_74845 chr17 56845961 56846626 + 0 NA exon (ENSMUSG00000024207.8, exon 13 of 15) protein_coding-exon (ENSMUSG00000024207.8, exon 13 of 15) -15354 ENSMUSG00000024206.15 ENSMUSG00000024206 ENSMUST00000233643 Rfx2 protein_coding Interval_72060 chr17 27783337 27784141 + 0 NA promoter-TSS (ENSMUSG00000080731.2) transcribed_processed_pseudogene-promoter-TSS (ENSMUSG00000080731.2) -640 ENSMUSG00000080731.2 ENSMUSG00000080731 ENSMUST00000121414 Rps2-ps9 transcribed_processed_pseudogene Interval_22392 chr11 9423419 9423624 + 0 NA intron (ENSMUSG00000004668.14, intron 35 of 61) protein_coding-intron (ENSMUSG00000004668.14, intron 35 of 61) 230070 ENSMUSG00000004668.14 ENSMUSG00000004668 ENSMUST00000151522 Abca13 protein_coding Interval_165486 chr9 48618225 48619439 + 0 NA Intergenic Intergenic -21457 ENSMUSG00000032271.13 ENSMUSG00000032271 ENSMUST00000128076 Nnmt protein_coding Interval_109901 chr3 150428527 150428802 + 0 NA Intergenic Intergenic 87417 ENSMUSG00000105779.1 ENSMUSG00000105779 ENSMUST00000199849 Gm6439 processed_pseudogene Interval_160763 chr8 112002463 112003890 + 0 NA exon (ENSMUSG00000031948.14, exon 1 of 1) protein_coding-exon (ENSMUSG00000031948.14, exon 1 of 1) 1591 ENSMUSG00000031948.14 ENSMUSG00000031948 ENSMUST00000211990 Kars protein_coding Interval_130861 chr5 132705878 132706459 + 0 NA Intergenic Intergenic -89985 ENSMUSG00000103500.1 ENSMUSG00000103500 ENSMUST00000192042 Gm38373 TEC Interval_172948 chrX 57358523 57360330 + 0 NA Intergenic Intergenic 32093 ENSMUSG00000065110.4 ENSMUSG00000065110 ENSMUST00000083176 Snord61 snoRNA Interval_9720 chr1 161256546 161257880 + 0 NA Intergenic Intergenic -6051 ENSMUSG00000026701.15 ENSMUSG00000026701 ENSMUST00000130867 Prdx6 protein_coding Interval_54430 chr14 69706675 69707692 + 0 NA exon (ENSMUSG00000034194.18, exon 1 of 7) protein_coding-exon (ENSMUSG00000034194.18, exon 1 of 7) 370 ENSMUSG00000034194.18 ENSMUSG00000034194 ENSMUST00000147609 R3hcc1 protein_coding Interval_33252 chr11 115483545 115483978 + 0 NA TTS (ENSMUSG00000057219.11) protein_coding-TTS (ENSMUSG00000057219.11) 7610 ENSMUSG00000020736.12 ENSMUSG00000020736 ENSMUST00000130668 Nt5c protein_coding Interval_8806 chr1 151304479 151305662 + 0 NA Intergenic Intergenic 39666 ENSMUSG00000100954.4 ENSMUSG00000100954 ENSMUST00000206952 Gm10138 antisense Interval_144437 chr7 25155378 25156361 + 0 NA intron (ENSMUSG00000074274.7, intron 2 of 2) lincRNA-intron (ENSMUSG00000074274.7, intron 2 of 2) 800 ENSMUSG00000074274.7 ENSMUSG00000074274 ENSMUST00000186424 D930028M14Rik lincRNA Interval_117301 chr4 122844030 122844379 + 0 NA intron (ENSMUSG00000028657.14, intron 2 of 4) protein_coding-intron (ENSMUSG00000028657.14, intron 2 of 8) 7958 ENSMUSG00000028657.14 ENSMUSG00000028657 ENSMUST00000097902 Ppt1 protein_coding Interval_146764 chr7 50071256 50071483 + 0 NA intron (ENSMUSG00000055409.14, intron 3 of 9) protein_coding-intron (ENSMUSG00000055409.14, intron 3 of 19) -26941 ENSMUSG00000055409.14 ENSMUSG00000055409 ENSMUST00000154410 Nell1 protein_coding Interval_68667 chr16 84219550 84219871 + 0 NA promoter-TSS (ENSMUSG00000116680.1) processed_pseudogene-promoter-TSS (ENSMUSG00000116680.1) -23 ENSMUSG00000116680.1 ENSMUSG00000116680 ENSMUST00000231505 Gm49562 processed_pseudogene Interval_129648 chr5 121524097 121525305 + 0 NA TTS (ENSMUSG00000029454.15) protein_coding-TTS (ENSMUSG00000029454.15) 6194 ENSMUSG00000082265.1 ENSMUSG00000082265 ENSMUST00000122152 Gm15547 processed_pseudogene Interval_122226 chr5 20400707 20401345 + 0 NA intron (ENSMUSG00000040003.18, intron 5 of 15) protein_coding-intron (ENSMUSG00000040003.18, intron 9 of 22) 136685 ENSMUSG00000087768.1 ENSMUSG00000087768 ENSMUST00000157143 Gm22755 snRNA Interval_69082 chr16 90508852 90509059 + 0 NA Intergenic Intergenic 41654 ENSMUSG00000116753.1 ENSMUSG00000116753 ENSMUST00000232652 Gm36001 lincRNA Interval_30458 chr11 94495220 94495979 + 0 NA TTS (ENSMUSG00000010080.15) protein_coding-TTS (ENSMUSG00000010080.15) 3521 ENSMUSG00000010080.15 ENSMUSG00000010080 ENSMUST00000150526 Epn3 protein_coding Interval_151765 chr7 126515539 126517068 + 0 NA Intergenic Intergenic -12948 ENSMUSG00000032637.15 ENSMUSG00000032637 ENSMUST00000179818 Atxn2l protein_coding Interval_80157 chr18 37919779 37920230 + 0 NA exon (ENSMUSG00000117686.1, exon 1 of 1) processed_pseudogene-exon (ENSMUSG00000117686.1, exon 1 of 1) 186 ENSMUSG00000117686.1 ENSMUSG00000117686 ENSMUST00000236273 Gm50122 processed_pseudogene Interval_134073 chr6 18780586 18781304 + 0 NA Intergenic Intergenic -11906 ENSMUSG00000107299.1 ENSMUSG00000107299 ENSMUST00000200735 Gm43228 processed_pseudogene Interval_129877 chr5 122879891 122882879 + 0 NA promoter-TSS (ENSMUSG00000029475.17) protein_coding-promoter-TSS (ENSMUSG00000029475.17) 27015 ENSMUSG00000105979.1 ENSMUSG00000105979 ENSMUST00000196235 Gm43411 TEC Interval_6990 chr1 121588460 121588729 + 0 NA Intergenic Intergenic -29379 ENSMUSG00000001674.11 ENSMUSG00000001674 ENSMUST00000131471 Ddx18 protein_coding Interval_47909 chr13 94317822 94318575 + 0 NA Intergenic Intergenic -18339 ENSMUSG00000114056.1 ENSMUSG00000114056 ENSMUST00000220897 Gm5668 processed_pseudogene Interval_49805 chr13 116009777 116010852 + 0 NA Intergenic Intergenic -85721 ENSMUSG00000114956.1 ENSMUSG00000114956 ENSMUST00000224590 Gm47893 processed_pseudogene Interval_42051 chr13 6897786 6898520 + 0 NA Intergenic Intergenic 27698 ENSMUSG00000113932.1 ENSMUSG00000113932 ENSMUST00000220700 2900024D18Rik TEC Interval_146642 chr7 49042359 49042563 + 0 NA intron (ENSMUSG00000052512.17, intron 2 of 39) protein_coding-intron (ENSMUSG00000052512.17, intron 2 of 39) 20120 ENSMUSG00000109068.1 ENSMUSG00000109068 ENSMUST00000207469 Gm45207 processed_pseudogene Interval_94302 chr2 87716572 87717165 + 0 NA Intergenic Intergenic -3689 ENSMUSG00000075150.2 ENSMUSG00000075150 ENSMUST00000099850 Olfr1137 protein_coding Interval_8404 chr1 138901542 138902041 + 0 NA Intergenic Intergenic 14252 ENSMUSG00000103850.1 ENSMUSG00000103850 ENSMUST00000195391 Gm3933 processed_pseudogene Interval_41047 chr12 110801736 110803249 + 0 NA intron (ENSMUSG00000037957.14, intron 2 of 2) protein_coding-intron (ENSMUSG00000037957.14, intron 2 of 2) 38435 ENSMUSG00000056458.16 ENSMUSG00000056458 ENSMUST00000177224 Mok protein_coding Interval_11181 chr1 179916216 179919140 + 0 NA Intergenic Intergenic 7733 ENSMUSG00000104418.1 ENSMUSG00000104418 ENSMUST00000193272 Gm37070 processed_pseudogene Interval_3209 chr1 54870833 54871033 + 0 NA intron (ENSMUSG00000052331.14, intron 1 of 7) protein_coding-intron (ENSMUSG00000052331.14, intron 1 of 27) 45661 ENSMUSG00000102642.1 ENSMUSG00000102642 ENSMUST00000193052 A130048G24Rik TEC Interval_119372 chr4 137296080 137296743 + 0 NA exon (ENSMUSG00000036856.4, exon 5 of 5) protein_coding-exon (ENSMUSG00000036856.4, exon 5 of 5) 18922 ENSMUSG00000036856.4 ENSMUSG00000036856 ENSMUST00000045747 Wnt4 protein_coding Interval_49835 chr13 116908591 116909018 + 0 NA intron (ENSMUSG00000021725.9, intron 9 of 25) protein_coding-intron (ENSMUSG00000021725.9, intron 10 of 26) -70626 ENSMUSG00000114290.1 ENSMUSG00000114290 ENSMUST00000224552 4930435F18Rik lincRNA Interval_110564 chr4 3937998 3939471 + 0 NA promoter-TSS (ENSMUSG00000003282.9) protein_coding-promoter-TSS (ENSMUSG00000003282.9) -311 ENSMUSG00000003282.9 ENSMUSG00000003282 ENSMUST00000147035 Plag1 protein_coding Interval_156983 chr8 63806320 63806579 + 0 NA Intergenic Intergenic 28398 ENSMUSG00000098106.1 ENSMUSG00000098106 ENSMUST00000182057 Gm5350 processed_pseudogene Interval_52214 chr14 40708154 40708338 + 0 NA Intergenic Intergenic -38981 ENSMUSG00000114933.1 ENSMUSG00000114933 ENSMUST00000225171 Gm48040 processed_pseudogene Interval_92922 chr2 68572516 68573240 + 0 NA intron (ENSMUSG00000116244.1, intron 3 of 3) transcribed_unprocessed_pseudogene-intron (ENSMUSG00000116244.1, intron 3 of 3) 4034 ENSMUSG00000116244.1 ENSMUSG00000116244 ENSMUST00000230049 Gm49461 transcribed_unprocessed_pseudogene Interval_168646 chr9 85245026 85245793 + 0 NA Intergenic Intergenic -5368 ENSMUSG00000111822.1 ENSMUSG00000111822 ENSMUST00000213613 Gm48831 lincRNA Interval_150236 chr7 108760215 108761128 + 0 NA Intergenic Intergenic 9698 ENSMUSG00000051200.3 ENSMUSG00000051200 ENSMUST00000055146 Olfr513 protein_coding Interval_47240 chr13 78985860 78986240 + 0 NA Intergenic Intergenic -31258 ENSMUSG00000114557.1 ENSMUSG00000114557 ENSMUST00000225033 Gm8345 processed_pseudogene Interval_62026 chr15 85969707 85970618 + 0 NA intron (ENSMUSG00000016028.11, intron 1 of 33) protein_coding-intron (ENSMUSG00000016028.11, intron 2 of 34) -67963 ENSMUSG00000016028.11 ENSMUSG00000016028 ENSMUST00000227450 Celsr1 protein_coding Interval_167645 chr9 71490186 71490505 + 0 NA Intergenic Intergenic -4440 ENSMUSG00000032199.13 ENSMUSG00000032199 ENSMUST00000233263 Polr2m protein_coding Interval_59464 chr15 53331091 53331452 + 0 NA intron (ENSMUSG00000061731.9, intron 1 of 10) protein_coding-intron (ENSMUSG00000061731.9, intron 1 of 10) -52648 ENSMUSG00000087805.2 ENSMUSG00000087805 ENSMUST00000157180 Gm27926 snRNA Interval_142694 chr6 145035594 145036483 + 0 NA promoter-TSS (ENSMUSG00000030268.17) protein_coding-promoter-TSS (ENSMUSG00000030268.17) 2150 ENSMUSG00000088867.1 ENSMUSG00000088867 ENSMUST00000158242 Gm23071 rRNA Interval_78639 chr18 16091199 16091401 + 0 NA Intergenic Intergenic 53150 ENSMUSG00000117532.1 ENSMUSG00000117532 ENSMUST00000234268 Gm50076 lincRNA Interval_99405 chr2 160686906 160687144 + 0 NA exon (ENSMUSG00000070544.6, exon 1 of 3) protein_coding-exon (ENSMUSG00000070544.6, exon 1 of 3) 1356 ENSMUSG00000070544.6 ENSMUSG00000070544 ENSMUST00000150039 Top1 protein_coding Interval_101902 chr3 10743587 10743832 + 0 NA Intergenic Intergenic 10719 ENSMUSG00000104185.1 ENSMUSG00000104185 ENSMUST00000193047 Gm18692 processed_pseudogene Interval_104606 chr3 68724174 68724955 + 0 NA Intergenic Intergenic -8573 ENSMUSG00000058360.5 ENSMUSG00000058360 ENSMUST00000080726 Gm10040 pseudogene Interval_54405 chr14 68563606 68564078 + 0 NA exon (ENSMUSG00000022057.8, exon 14 of 14) protein_coding-exon (ENSMUSG00000022057.8, exon 14 of 14) 18253 ENSMUSG00000022057.8 ENSMUSG00000022057 ENSMUST00000022641 Adamdec1 protein_coding Interval_11519 chr1 182399144 182399503 + 0 NA Intergenic Intergenic -5788 ENSMUSG00000097260.1 ENSMUSG00000097260 ENSMUST00000181525 Gm5706 processed_pseudogene Interval_142131 chr6 137495126 137496235 + 0 NA intron (ENSMUSG00000015766.14, intron 17 of 20) protein_coding-intron (ENSMUSG00000015766.14, intron 18 of 21) 64375 ENSMUSG00000107759.1 ENSMUSG00000107759 ENSMUST00000204925 Gm44258 sense_intronic Interval_103099 chr3 35317238 35318194 + 0 NA Intergenic Intergenic -7898 ENSMUSG00000093499.1 ENSMUSG00000093499 ENSMUST00000177270 Gm25442 miRNA Interval_17501 chr10 77273026 77274227 + 0 NA Intergenic Intergenic 11178 ENSMUSG00000020260.9 ENSMUSG00000020260 ENSMUST00000218117 Pofut2 protein_coding Interval_174693 chrX 163252783 163253418 + 0 NA Intergenic Intergenic -19812 ENSMUSG00000082598.1 ENSMUSG00000082598 ENSMUST00000122403 Gm15212 processed_pseudogene Interval_105219 chr3 83950535 83950756 + 0 NA intron (ENSMUSG00000033767.14, intron 4 of 21) protein_coding-intron (ENSMUSG00000033767.14, intron 7 of 33) -43066 ENSMUSG00000033767.14 ENSMUSG00000033767 ENSMUST00000192811 Tmem131l protein_coding Interval_162787 chr9 9110892 9111352 + 0 NA intron (ENSMUSG00000050730.17, intron 4 of 5) protein_coding-intron (ENSMUSG00000050730.17, intron 4 of 22) -125166 ENSMUSG00000085253.3 ENSMUSG00000085253 ENSMUST00000150263 Gm16833 antisense Interval_88962 chr2 13573400 13575770 + 0 NA promoter-TSS (ENSMUSG00000026728.9) protein_coding-promoter-TSS (ENSMUSG00000026728.9) 304 ENSMUSG00000026728.9 ENSMUSG00000026728 ENSMUST00000148248 Vim protein_coding Interval_26846 chr11 61021708 61023493 + 0 NA promoter-TSS (ENSMUSG00000042529.14) protein_coding-promoter-TSS (ENSMUSG00000042529.14) -43204 ENSMUSG00000042529.14 ENSMUSG00000042529 ENSMUST00000108717 Kcnj12 protein_coding Interval_26610 chr11 59208039 59209560 + 0 NA promoter-TSS (ENSMUSG00000072898.3) pseudogene-promoter-TSS (ENSMUSG00000072898.3) -79 ENSMUSG00000072898.3 ENSMUSG00000072898 ENSMUST00000101158 Gm10434 pseudogene Interval_64931 chr16 17324347 17324654 + 0 NA intron (ENSMUSG00000041720.14, intron 5 of 10) protein_coding-intron (ENSMUSG00000041720.14, intron 22 of 54) -6883 ENSMUSG00000022766.14 ENSMUSG00000022766 ENSMUST00000231884 Serpind1 protein_coding Interval_135858 chr6 47963604 47964239 + 0 NA exon (ENSMUSG00000045466.18, exon 5 of 5) protein_coding-exon (ENSMUSG00000045466.18, exon 5 of 5) 10476 ENSMUSG00000045466.18 ENSMUSG00000045466 ENSMUST00000140719 Zfp956 protein_coding Interval_110737 chr4 7732971 7734444 + 0 NA Intergenic Intergenic -25963 ENSMUSG00000085630.1 ENSMUSG00000085630 ENSMUST00000127180 Gm11795 lincRNA Interval_144314 chr7 24448955 24449582 + 0 NA intron (ENSMUSG00000108360.1, intron 1 of 2) protein_coding-intron (ENSMUSG00000062028.8, intron 1 of 1) 914 ENSMUSG00000108360.1 ENSMUSG00000108360 ENSMUST00000206737 Gm36159 lincRNA Interval_47780 chr13 92698741 92699400 + 0 NA intron (ENSMUSG00000021703.9, intron 8 of 11) protein_coding-intron (ENSMUSG00000021703.9, intron 8 of 11) -6712 ENSMUSG00000021703.9 ENSMUSG00000021703 ENSMUST00000224458 Serinc5 protein_coding Interval_156506 chr8 48809337 48809814 + 0 NA intron (ENSMUSG00000031561.16, intron 1 of 2) protein_coding-intron (ENSMUSG00000031561.16, intron 1 of 2) -34147 ENSMUSG00000100706.6 ENSMUSG00000100706 ENSMUST00000188936 Gm19744 processed_transcript Interval_170747 chr9 110503268 110503620 + 0 NA intron (ENSMUSG00000032489.17, intron 11 of 17) protein_coding-intron (ENSMUSG00000032489.17, intron 10 of 20) 26486 ENSMUSG00000032489.17 ENSMUSG00000032489 ENSMUST00000084952 Kif9 protein_coding Interval_78398 chr18 12487649 12488087 + 0 NA intron (ENSMUSG00000024421.16, intron 32 of 74) protein_coding-intron (ENSMUSG00000024421.16, intron 32 of 74) 11594 ENSMUSG00000100090.1 ENSMUSG00000100090 ENSMUST00000187766 Gm29199 processed_pseudogene Interval_95315 chr2 106430736 106431672 + 0 NA Intergenic Intergenic 91899 ENSMUSG00000087226.1 ENSMUSG00000087226 ENSMUST00000130634 Gm14015 lincRNA Interval_132386 chr5 144638360 144638883 + 0 NA Intergenic Intergenic 85176 ENSMUSG00000082524.3 ENSMUSG00000082524 ENSMUST00000121256 Gm6272 processed_pseudogene Interval_25971 chr11 53254577 53255201 + 0 NA Intergenic Intergenic 45522 ENSMUSG00000020361.13 ENSMUSG00000020361 ENSMUST00000151854 Hspa4 protein_coding Interval_25656 chr11 50442113 50443085 + 0 NA Intergenic Intergenic -28024 ENSMUSG00000020375.9 ENSMUSG00000020375 ENSMUST00000129304 Rufy1 protein_coding Interval_100203 chr2 167620841 167621061 + 0 NA intron (ENSMUSG00000089739.2, intron 5 of 7) protein_coding-intron (ENSMUSG00000078923.10, intron 1 of 2) 11036 ENSMUSG00000078923.10 ENSMUSG00000078923 ENSMUST00000144830 Ube2v1 protein_coding Interval_4880 chr1 81303431 81304145 + 0 NA intron (ENSMUSG00000054976.14, intron 6 of 6) protein_coding-intron (ENSMUSG00000054976.14, intron 6 of 6) 218553 ENSMUSG00000104029.1 ENSMUSG00000104029 ENSMUST00000192484 Gm37210 TEC Interval_45706 chr13 57107881 57109148 + 0 NA Intergenic Intergenic -131333 ENSMUSG00000114363.1 ENSMUSG00000114363 ENSMUST00000225562 Gm48174 processed_pseudogene Interval_68133 chr16 65543843 65544383 + 0 NA intron (ENSMUSG00000004843.7, intron 5 of 6) protein_coding-intron (ENSMUSG00000004843.7, intron 4 of 5) -17942 ENSMUSG00000116699.1 ENSMUSG00000116699 ENSMUST00000232553 Gm49631 lincRNA Interval_171493 chr9 118781043 118781848 + 0 NA intron (ENSMUSG00000039115.13, intron 4 of 5) protein_coding-intron (ENSMUSG00000039115.13, intron 16 of 27) 56510 ENSMUSG00000066270.3 ENSMUSG00000066270 ENSMUST00000139408 Gm10157 processed_pseudogene Interval_53697 chr14 60966879 60967154 + 0 NA intron (ENSMUSG00000060548.13, intron 5 of 5) protein_coding-intron (ENSMUSG00000060548.13, intron 9 of 9) 70875 ENSMUSG00000060548.13 ENSMUSG00000060548 ENSMUST00000225730 Tnfrsf19 protein_coding Interval_138683 chr6 91139751 91141092 + 0 NA Intergenic Intergenic 18835 ENSMUSG00000085624.1 ENSMUSG00000085624 ENSMUST00000150544 Gm14573 antisense Interval_87111 chr19 46177104 46177856 + 0 NA intron (ENSMUSG00000025224.16, intron 3 of 18) protein_coding-intron (ENSMUSG00000025224.16, intron 3 of 39) 24900 ENSMUSG00000025224.16 ENSMUSG00000025224 ENSMUST00000176046 Gbf1 protein_coding Interval_158070 chr8 78536832 78538592 + 0 NA intron (ENSMUSG00000031684.11, intron 4 of 10) protein_coding-intron (ENSMUSG00000031684.11, intron 4 of 11) 28366 ENSMUSG00000031684.11 ENSMUSG00000031684 ENSMUST00000210132 Slc10a7 protein_coding Interval_80008 chr18 36610226 36610447 + 0 NA exon (ENSMUSG00000085172.1, exon 1 of 1) processed_pseudogene-exon (ENSMUSG00000085172.1, exon 1 of 1) 378 ENSMUSG00000085172.1 ENSMUSG00000085172 ENSMUST00000153606 Gm6542 processed_pseudogene Interval_168672 chr9 85703972 85704276 + 0 NA intron (ENSMUSG00000035941.15, intron 22 of 27) protein_coding-intron (ENSMUSG00000035941.15, intron 23 of 28) 14414 ENSMUSG00000035941.15 ENSMUSG00000035941 ENSMUST00000186447 Ibtk protein_coding Interval_90210 chr2 29047691 29048053 + 0 NA intron (ENSMUSG00000079502.8, intron 1 of 6) protein_coding-intron (ENSMUSG00000079502.8, intron 1 of 5) -8512 ENSMUSG00000079502.8 ENSMUSG00000079502 ENSMUST00000113843 Cfap77 protein_coding Interval_55819 chr14 100569898 100570902 + 0 NA Intergenic Intergenic 11768 ENSMUSG00000115506.1 ENSMUSG00000115506 ENSMUST00000228938 Gm49237 lincRNA Interval_6533 chr1 114808837 114809485 + 0 NA Intergenic Intergenic 410602 ENSMUSG00000101687.1 ENSMUSG00000101687 ENSMUST00000185902 Gm4854 processed_pseudogene Interval_27114 chr11 63004643 63004861 + 0 NA promoter-TSS (ENSMUSG00000087604.7) antisense-promoter-TSS (ENSMUSG00000087604.7) -624 ENSMUSG00000087604.7 ENSMUSG00000087604 ENSMUST00000130177 Cdrt4os1 antisense Interval_98774 chr2 154875905 154876125 + 0 NA intron (ENSMUSG00000074656.12, intron 7 of 9) protein_coding-intron (ENSMUSG00000074656.12, intron 7 of 8) 16767 ENSMUSG00000074656.12 ENSMUSG00000074656 ENSMUST00000135524 Eif2s2 protein_coding Interval_83425 chr18 85183245 85183561 + 0 NA Intergenic Intergenic 111567 ENSMUSG00000118198.1 ENSMUSG00000118198 ENSMUST00000237500 Gm50370 lincRNA Interval_133972 chr6 17087298 17087648 + 0 NA intron (ENSMUSG00000054556.6, intron 1 of 2) protein_coding-intron (ENSMUSG00000029552.19, intron 4 of 8) 22313 ENSMUSG00000029552.19 ENSMUSG00000029552 ENSMUST00000076654 Tes protein_coding Interval_137365 chr6 71723563 71724632 + 0 NA intron (ENSMUSG00000052852.8, intron 1 of 8) protein_coding-intron (ENSMUSG00000052852.8, intron 1 of 6) 16227 ENSMUSG00000052852.8 ENSMUSG00000052852 ENSMUST00000212631 Reep1 protein_coding Interval_172265 chrX 12110650 12111018 + 0 NA intron (ENSMUSG00000040363.15, intron 1 of 13) protein_coding-intron (ENSMUSG00000040363.15, intron 1 of 13) 49512 ENSMUSG00000040363.15 ENSMUSG00000040363 ENSMUST00000209776 Bcor protein_coding Interval_159875 chr8 104555192 104556064 + 0 NA exon (ENSMUSG00000110607.1, exon 3 of 3) lincRNA-exon (ENSMUSG00000110607.1, exon 3 of 3) 1359 ENSMUSG00000110607.1 ENSMUSG00000110607 ENSMUST00000212317 Gm45843 lincRNA Interval_130374 chr5 127022887 127023170 + 0 NA exon (ENSMUSG00000105782.1, exon 1 of 1) TEC-exon (ENSMUSG00000105782.1, exon 1 of 1) 2801 ENSMUSG00000105782.1 ENSMUSG00000105782 ENSMUST00000197355 Gm42955 TEC Interval_121774 chr5 7880219 7880905 + 0 NA intron (ENSMUSG00000105068.1, intron 2 of 5) lincRNA-intron (ENSMUSG00000105068.1, intron 2 of 5) -8123 ENSMUSG00000080515.1 ENSMUSG00000080515 ENSMUST00000116865 Gm22196 miRNA Interval_47961 chr13 94667880 94669428 + 0 NA Intergenic Intergenic -21310 ENSMUSG00000113598.1 ENSMUSG00000113598 ENSMUST00000221068 Gm48287 lincRNA Interval_25738 chr11 51245185 51245442 + 0 NA Intergenic Intergenic 10951 ENSMUSG00000045942.13 ENSMUSG00000045942 ENSMUST00000231433 BC049762 protein_coding Interval_127198 chr5 101112642 101112885 + 0 NA Intergenic Intergenic -192815 ENSMUSG00000105965.1 ENSMUSG00000105965 ENSMUST00000197114 Cycs-ps2 processed_pseudogene Interval_121335 chr4 155065927 155067852 + 0 NA promoter-TSS (ENSMUSG00000029047.13) protein_coding-promoter-TSS (ENSMUSG00000029047.13) -170 ENSMUSG00000029047.13 ENSMUSG00000029047 ENSMUST00000134341 Pex10 protein_coding Interval_76093 chr17 74869387 74870234 + 0 NA Intergenic Intergenic -8876 ENSMUSG00000117441.1 ENSMUSG00000117441 ENSMUST00000234097 Gm50021 antisense Interval_21085 chr10 126035713 126036069 + 0 NA promoter-TSS (ENSMUSG00000093161.1) miRNA-promoter-TSS (ENSMUSG00000093161.1) -936 ENSMUSG00000093161.1 ENSMUSG00000093161 ENSMUST00000175420 Gm22183 miRNA Interval_99116 chr2 157295350 157295631 + 0 NA TTS (ENSMUSG00000027642.15) protein_coding-TTS (ENSMUSG00000027642.15) 13547 ENSMUSG00000027642.15 ENSMUSG00000027642 ENSMUST00000149924 Rpn2 protein_coding Interval_150684 chr7 113297202 113297434 + 0 NA intron (ENSMUSG00000055116.8, intron 12 of 19) protein_coding-intron (ENSMUSG00000055116.8, intron 12 of 19) -1981 ENSMUSG00000109959.1 ENSMUSG00000109959 ENSMUST00000211342 Gm45355 antisense Interval_106711 chr3 99263465 99263879 + 0 NA intron (ENSMUSG00000027868.11, intron 1 of 7) protein_coding-intron (ENSMUSG00000027868.11, intron 1 of 7) -2387 ENSMUSG00000105689.1 ENSMUSG00000105689 ENSMUST00000196228 Gm43120 antisense Interval_10929 chr1 177119112 177119423 + 0 NA intron (ENSMUSG00000019699.16, intron 2 of 12) protein_coding-intron (ENSMUSG00000019699.16, intron 2 of 12) 16186 ENSMUSG00000103163.1 ENSMUSG00000103163 ENSMUST00000194121 Gm38146 TEC Interval_95571 chr2 112389204 112389957 + 0 NA promoter-TSS (ENSMUSG00000081541.1) processed_pseudogene-promoter-TSS (ENSMUSG00000081541.1) -83 ENSMUSG00000081541.1 ENSMUSG00000081541 ENSMUST00000121023 Gm13940 processed_pseudogene Interval_112584 chr4 43404694 43407633 + 0 NA promoter-TSS (ENSMUSG00000035969.15) protein_coding-promoter-TSS (ENSMUSG00000035969.15) -8533 ENSMUSG00000035969.15 ENSMUSG00000035969 ENSMUST00000123447 Rusc2 protein_coding Interval_87238 chr19 47130592 47130869 + 0 NA exon (ENSMUSG00000025047.9, exon 36 of 36) protein_coding-exon (ENSMUSG00000025047.9, exon 36 of 36) 2072 ENSMUSG00000025047.9 ENSMUSG00000025047 ENSMUST00000236656 Pdcd11 protein_coding Interval_26018 chr11 53507657 53509010 + 0 NA Intergenic Intergenic 7149 ENSMUSG00000085718.2 ENSMUSG00000085718 ENSMUST00000119147 Rpl9-ps3 processed_pseudogene Interval_84592 chr19 13978014 13978235 + 0 NA Intergenic Intergenic 40247 ENSMUSG00000098074.1 ENSMUSG00000098074 ENSMUST00000182766 Gm26993 processed_pseudogene Interval_30264 chr11 92405784 92406048 + 0 NA Intergenic Intergenic 365057 ENSMUSG00000081363.2 ENSMUSG00000081363 ENSMUST00000118237 Gm11500 processed_pseudogene Interval_71920 chr17 27009363 27009862 + 0 NA intron (ENSMUSG00000117819.1, intron 2 of 8) protein_coding-intron (ENSMUSG00000117819.1, intron 2 of 8) 18975 ENSMUSG00000057789.14 ENSMUSG00000057789 ENSMUST00000143158 Bak1 protein_coding Interval_135920 chr6 48693891 48694104 + 0 NA Intergenic Intergenic 9416 ENSMUSG00000054435.16 ENSMUSG00000054435 ENSMUST00000090070 Gimap4 protein_coding Interval_33345 chr11 116047611 116047910 + 0 NA exon (ENSMUSG00000020770.13, exon 2 of 16) protein_coding-exon (ENSMUSG00000020770.13, exon 2 of 16) 17437 ENSMUSG00000020770.13 ENSMUSG00000020770 ENSMUST00000140683 Unk protein_coding Interval_5397 chr1 88482639 88482893 + 0 NA Intergenic Intergenic -20158 ENSMUSG00000099553.1 ENSMUSG00000099553 ENSMUST00000190783 Gm29538 lincRNA Interval_122342 chr5 21547420 21547797 + 0 NA intron (ENSMUSG00000048520.16, intron 11 of 18) protein_coding-intron (ENSMUSG00000039883.5, intron 1 of 3) 4049 ENSMUSG00000039883.5 ENSMUSG00000039883 ENSMUST00000035651 Lrrc17 protein_coding Interval_17748 chr10 79881947 79882697 + 0 NA TTS (ENSMUSG00000057729.12) protein_coding-TTS (ENSMUSG00000057729.12) 539 ENSMUSG00000057729.12 ENSMUSG00000057729 ENSMUST00000171489 Prtn3 protein_coding Interval_78094 chr18 7929637 7930369 + 0 NA TTS (ENSMUSG00000024283.15) protein_coding-TTS (ENSMUSG00000024283.15) -2779 ENSMUSG00000091019.1 ENSMUSG00000091019 ENSMUST00000169235 Gm7502 processed_pseudogene Interval_102413 chr3 25006355 25007914 + 0 NA TTS (ENSMUSG00000105009.1) processed_pseudogene-TTS (ENSMUSG00000105009.1) 571 ENSMUSG00000105009.1 ENSMUSG00000105009 ENSMUST00000198854 Gm42774 processed_pseudogene Interval_104062 chr3 57911943 57913405 + 0 NA Intergenic Intergenic 9513 ENSMUSG00000088570.1 ENSMUSG00000088570 ENSMUST00000157945 Gm24531 snRNA Interval_88592 chr2 6435856 6436848 + 0 NA promoter-TSS (ENSMUSG00000085716.1) antisense-promoter-TSS (ENSMUSG00000085716.1) -319 ENSMUSG00000085716.1 ENSMUSG00000085716 ENSMUST00000126659 Gm13388 antisense Interval_168735 chr9 86530183 86530699 + 0 NA intron (ENSMUSG00000034973.16, intron 24 of 37) protein_coding-intron (ENSMUSG00000034973.16, intron 23 of 36) 16354 ENSMUSG00000103731.1 ENSMUSG00000103731 ENSMUST00000194336 Gm17530 TEC Interval_66898 chr16 38406441 38408408 + 0 NA intron (ENSMUSG00000002847.7, intron 7 of 10) protein_coding-intron (ENSMUSG00000002847.7, intron 7 of 10) 10370 ENSMUSG00000002847.7 ENSMUSG00000002847 ENSMUST00000232224 Pla1a protein_coding Interval_172420 chrX 18727815 18728827 + 0 NA Intergenic Intergenic -192483 ENSMUSG00000082757.1 ENSMUSG00000082757 ENSMUST00000118343 Gm6923 processed_pseudogene Interval_156748 chr8 57836738 57837340 + 0 NA intron (ENSMUSG00000096914.3, intron 2 of 3) protein_coding-intron (ENSMUSG00000096914.3, intron 5 of 7) 6019 ENSMUSG00000096914.3 ENSMUSG00000096914 ENSMUST00000203398 Galntl6 protein_coding Interval_164004 chr9 30823513 30823812 + 0 NA Intergenic Intergenic -42183 ENSMUSG00000111867.1 ENSMUSG00000111867 ENSMUST00000213576 Gm31013 lincRNA Interval_140937 chr6 122868105 122868564 + 0 NA Intergenic Intergenic -6215 ENSMUSG00000030327.8 ENSMUSG00000030327 ENSMUST00000203476 Necap1 protein_coding Interval_63587 chr15 102216901 102217545 + 0 NA promoter-TSS (ENSMUSG00000001281.10) protein_coding-promoter-TSS (ENSMUSG00000001281.10) 12645 ENSMUSG00000046897.17 ENSMUSG00000046897 ENSMUST00000119830 Zfp740 protein_coding Interval_85367 chr19 25236308 25237840 + 0 NA promoter-TSS (ENSMUSG00000032702.16) protein_coding-promoter-TSS (ENSMUSG00000032702.16) -70858 ENSMUSG00000065634.1 ENSMUSG00000065634 ENSMUST00000083700 Gm24252 snoRNA Interval_91378 chr2 38386382 38386902 + 0 NA Intergenic Intergenic -22662 ENSMUSG00000087539.1 ENSMUSG00000087539 ENSMUST00000137134 Gm13584 antisense Interval_46290 chr13 63418320 63418655 + 0 NA intron (ENSMUSG00000021461.17, intron 1 of 6) protein_coding-intron (ENSMUSG00000021461.17, intron 1 of 15) -3720 ENSMUSG00000113126.1 ENSMUSG00000113126 ENSMUST00000220476 Gm47588 TEC Interval_119721 chr4 139486865 139488613 + 0 NA intron (ENSMUSG00000066036.14, intron 105 of 105) protein_coding-intron (ENSMUSG00000066036.14, intron 105 of 105) -86981 ENSMUSG00000041025.15 ENSMUSG00000041025 ENSMUST00000174078 Iffo2 protein_coding Interval_152525 chr7 133850944 133851146 + 0 NA intron (ENSMUSG00000053111.13, intron 2 of 11) protein_coding-intron (ENSMUSG00000053111.13, intron 1 of 10) 61560 ENSMUSG00000053111.13 ENSMUSG00000053111 ENSMUST00000211077 Fank1 protein_coding Interval_99031 chr2 156751944 156752301 + 0 NA intron (ENSMUSG00000061689.15, intron 4 of 6) protein_coding-intron (ENSMUSG00000061689.15, intron 4 of 6) -23332 ENSMUSG00000067818.6 ENSMUSG00000067818 ENSMUST00000131622 Myl9 protein_coding Interval_151552 chr7 123499659 123501194 + 0 NA promoter-TSS (ENSMUSG00000030757.13) protein_coding-promoter-TSS (ENSMUSG00000030757.13) -19497 ENSMUSG00000030757.13 ENSMUSG00000030757 ENSMUST00000128217 Zkscan2 protein_coding Interval_145192 chr7 30557847 30560075 + 0 NA intron (ENSMUSG00000036845.12, intron 1 of 8) protein_coding-intron (ENSMUSG00000036845.12, intron 1 of 8) 698 ENSMUSG00000036845.12 ENSMUSG00000036845 ENSMUST00000149400 Lin37 protein_coding Interval_173256 chrX 75511506 75512027 + 0 NA Intergenic Intergenic -2551 ENSMUSG00000031197.11 ENSMUSG00000031197 ENSMUST00000123419 Vbp1 protein_coding Interval_141785 chr6 134470530 134471422 + 0 NA exon (ENSMUSG00000030201.15, exon 1 of 11) protein_coding-exon (ENSMUSG00000030201.15, exon 1 of 11) -3215 ENSMUSG00000030201.15 ENSMUSG00000030201 ENSMUST00000203235 Lrp6 protein_coding Interval_125487 chr5 67560997 67561447 + 0 NA Intergenic Intergenic 46604 ENSMUSG00000106947.1 ENSMUSG00000106947 ENSMUST00000200753 1700025A08Rik TEC Interval_169242 chr9 95749482 95750754 + 0 NA exon (ENSMUSG00000032839.13, exon 1 of 12) protein_coding-exon (ENSMUSG00000032839.13, exon 1 of 12) 240 ENSMUSG00000032839.13 ENSMUSG00000032839 ENSMUST00000190205 Trpc1 protein_coding Interval_21351 chr10 128119449 128119670 + 0 NA TTS (ENSMUSG00000040054.17) protein_coding-TTS (ENSMUSG00000040054.17) 27977 ENSMUSG00000040054.17 ENSMUSG00000040054 ENSMUST00000219980 Baz2a protein_coding Interval_58434 chr15 34503688 34503897 + 0 NA intron (ENSMUSG00000022325.14, intron 3 of 15) protein_coding-intron (ENSMUSG00000022325.14, intron 3 of 16) -8621 ENSMUSG00000022323.11 ENSMUSG00000022323 ENSMUST00000129426 Rida protein_coding Interval_40918 chr12 109890735 109891932 + 0 NA Intergenic Intergenic 3760 ENSMUSG00000113625.1 ENSMUSG00000113625 ENSMUST00000222259 Gm3379 processed_pseudogene Interval_22625 chr11 12373256 12374113 + 0 NA intron (ENSMUSG00000020173.17, intron 2 of 5) protein_coding-intron (ENSMUSG00000020173.17, intron 4 of 14) 38460 ENSMUSG00000020173.17 ENSMUSG00000020173 ENSMUST00000146067 Cobl protein_coding Interval_107397 chr3 107278387 107279638 + 0 NA promoter-TSS (ENSMUSG00000087260.5) protein_coding-promoter-TSS (ENSMUSG00000087260.5) 13 ENSMUSG00000087260.5 ENSMUSG00000087260 ENSMUST00000199317 Lamtor5 protein_coding Interval_130561 chr5 128822189 128822893 + 0 NA intron (ENSMUSG00000029420.14, intron 2 of 20) protein_coding-intron (ENSMUSG00000029420.14, intron 3 of 21) -46991 ENSMUSG00000106522.1 ENSMUSG00000106522 ENSMUST00000199333 Gm42871 sense_intronic Interval_93027 chr2 69660061 69660545 + 0 NA intron (ENSMUSG00000063145.10, intron 7 of 10) protein_coding-intron (ENSMUSG00000063145.10, intron 7 of 11) -9817 ENSMUSG00000075307.3 ENSMUSG00000075307 ENSMUST00000100050 Klhl41 protein_coding Interval_8458 chr1 139529063 139529867 + 0 NA Intergenic Intergenic 13071 ENSMUSG00000026368.6 ENSMUSG00000026368 ENSMUST00000141842 F13b protein_coding Interval_157775 chr8 72990146 72991973 + 0 NA intron (ENSMUSG00000004383.18, intron 7 of 15) protein_coding-intron (ENSMUSG00000004383.18, intron 6 of 14) -25453 ENSMUSG00000093140.1 ENSMUSG00000093140 ENSMUST00000175399 Mir28b miRNA Interval_13888 chr10 24297766 24299150 + 0 NA intron (ENSMUSG00000020000.7, intron 10 of 11) protein_coding-intron (ENSMUSG00000020000.7, intron 10 of 11) 74913 ENSMUSG00000020000.7 ENSMUSG00000020000 ENSMUST00000154916 Moxd1 protein_coding Interval_58525 chr15 35589574 35590722 + 0 NA exon (ENSMUSG00000115144.1, exon 1 of 1) TEC-exon (ENSMUSG00000115144.1, exon 1 of 1) 834 ENSMUSG00000115144.1 ENSMUSG00000115144 ENSMUST00000228376 Gm7968 TEC Interval_106958 chr3 102189209 102191083 + 0 NA intron (ENSMUSG00000027860.15, intron 2 of 7) protein_coding-intron (ENSMUSG00000027860.15, intron 2 of 7) -13810 ENSMUSG00000089916.1 ENSMUSG00000089916 ENSMUST00000160105 Gm16160 antisense Interval_155498 chr8 33919739 33919975 + 0 NA intron (ENSMUSG00000031586.17, intron 1 of 8) protein_coding-intron (ENSMUSG00000031586.17, intron 1 of 7) 9535 ENSMUSG00000031586.17 ENSMUSG00000031586 ENSMUST00000231942 Rbpms protein_coding Interval_74660 chr17 54683802 54684015 + 0 NA Intergenic Intergenic 31972 ENSMUSG00000089514.1 ENSMUSG00000089514 ENSMUST00000158889 Gm26291 snoRNA Interval_111994 chr4 33094637 33095140 + 0 NA intron (ENSMUSG00000023267.10, intron 8 of 8) protein_coding-intron (ENSMUSG00000023267.10, intron 8 of 8) 13383 ENSMUSG00000023267.10 ENSMUSG00000023267 ENSMUST00000147889 Gabrr2 protein_coding Interval_97905 chr2 145530158 145531362 + 0 NA intron (ENSMUSG00000063873.10, intron 6 of 16) protein_coding-intron (ENSMUSG00000063873.10, intron 5 of 15) -20103 ENSMUSG00000084178.1 ENSMUSG00000084178 ENSMUST00000121742 Gm11759 processed_pseudogene Interval_168353 chr9 79410084 79410324 + 0 NA Intergenic Intergenic -14735 ENSMUSG00000111560.1 ENSMUSG00000111560 ENSMUST00000215133 Gm35262 processed_pseudogene Interval_38226 chr12 76484584 76485664 + 0 NA Intergenic Intergenic -7231 ENSMUSG00000112167.1 ENSMUSG00000112167 ENSMUST00000218608 Gm47053 processed_pseudogene Interval_6175 chr1 99635207 99635554 + 0 NA Intergenic Intergenic 4861 ENSMUSG00000099453.1 ENSMUSG00000099453 ENSMUST00000191164 Gm18248 processed_pseudogene Interval_52903 chr14 51958027 51958327 + 0 NA Intergenic Intergenic -28517 ENSMUSG00000115698.1 ENSMUSG00000115698 ENSMUST00000227552 Gm49076 lincRNA Interval_93576 chr2 74623054 74623583 + 0 NA Intergenic Intergenic -1324 ENSMUSG00000065237.1 ENSMUSG00000065237 ENSMUST00000083303 Gm22975 snRNA Interval_24565 chr11 34494177 34495645 + 0 NA intron (ENSMUSG00000020143.15, intron 25 of 26) protein_coding-intron (ENSMUSG00000020143.15, intron 25 of 51) 180153 ENSMUSG00000069911.11 ENSMUSG00000069911 ENSMUST00000093192 Insyn2b protein_coding Interval_21060 chr10 125724356 125726170 + 0 NA Intergenic Intergenic 212732 ENSMUSG00000112100.1 ENSMUSG00000112100 ENSMUST00000219250 Gm9102 processed_pseudogene Interval_70258 chr17 7697385 7697898 + 0 NA Intergenic Intergenic -7199 ENSMUSG00000094603.1 ENSMUSG00000094603 ENSMUST00000177784 Gm25872 miRNA Interval_67714 chr16 56210119 56210355 + 0 NA intron (ENSMUSG00000035270.15, intron 2 of 18) protein_coding-intron (ENSMUSG00000035270.15, intron 2 of 2) 5924 ENSMUSG00000035270.15 ENSMUSG00000035270 ENSMUST00000159842 Impg2 protein_coding Interval_128647 chr5 114490188 114490736 + 0 NA Intergenic Intergenic 38042 ENSMUSG00000041939.14 ENSMUSG00000041939 ENSMUST00000139420 Mvk protein_coding Interval_87273 chr19 47330653 47331627 + 0 NA intron (ENSMUSG00000053617.12, intron 6 of 13) protein_coding-intron (ENSMUSG00000053617.12, intron 6 of 14) -57551 ENSMUSG00000098786.1 ENSMUSG00000098786 ENSMUST00000183658 Mir6995 miRNA Interval_120363 chr4 148107468 148108807 + 0 NA intron (ENSMUSG00000029005.4, intron 5 of 6) protein_coding-intron (ENSMUSG00000029005.4, intron 5 of 6) 22561 ENSMUSG00000029005.4 ENSMUSG00000029005 ENSMUST00000030862 Draxin protein_coding Interval_27486 chr11 68160500 68160845 + 0 NA intron (ENSMUSG00000020903.13, intron 6 of 6) protein_coding-intron (ENSMUSG00000020903.13, intron 7 of 7) 35481 ENSMUSG00000087242.2 ENSMUSG00000087242 ENSMUST00000152781 C78197 antisense Interval_72449 chr17 29863655 29864330 + 0 NA intron (ENSMUSG00000043557.16, intron 1 of 4) protein_coding-intron (ENSMUSG00000043557.16, intron 1 of 15) -24011 ENSMUSG00000043557.16 ENSMUSG00000043557 ENSMUST00000167102 Mdga1 protein_coding Interval_63511 chr15 101558000 101558699 + 0 NA exon (ENSMUSG00000048699.4, exon 4 of 9) protein_coding-exon (ENSMUSG00000048699.4, exon 4 of 9) 1152 ENSMUSG00000105581.1 ENSMUSG00000105581 ENSMUST00000197418 Gm44393 miRNA Interval_152493 chr7 133484016 133484471 + 0 NA Intergenic Intergenic 117915 ENSMUSG00000030976.3 ENSMUSG00000030976 ENSMUST00000033275 Tex36 protein_coding Interval_60742 chr15 76472467 76472752 + 0 NA intron (ENSMUSG00000022557.11, intron 2 of 15) protein_coding-intron (ENSMUSG00000022557.11, intron 2 of 15) 15157 ENSMUSG00000034161.8 ENSMUSG00000034161 ENSMUST00000043089 Scx protein_coding Interval_127098 chr5 100293330 100294333 + 0 NA intron (ENSMUSG00000085915.1, intron 2 of 4) unprocessed_pseudogene-intron (ENSMUSG00000085915.1, intron 2 of 4) 61288 ENSMUSG00000085915.1 ENSMUSG00000085915 ENSMUST00000150506 Gm8091 unprocessed_pseudogene Interval_47110 chr13 75844171 75844852 + 0 NA TTS (ENSMUSG00000021591.8) protein_coding-TTS (ENSMUSG00000021591.8) 4610 ENSMUSG00000021591.8 ENSMUSG00000021591 ENSMUST00000222530 Glrx protein_coding Interval_170374 chr9 107541435 107542575 + 0 NA promoter-TSS (ENSMUSG00000010057.8) protein_coding-promoter-TSS (ENSMUSG00000010057.8) 188 ENSMUSG00000037190.12 ENSMUSG00000037190 ENSMUST00000194967 Cyb561d2 protein_coding Interval_65428 chr16 22281989 22282687 + 0 NA Intergenic Intergenic -12689 ENSMUSG00000082241.4 ENSMUSG00000082241 ENSMUST00000120931 Gng5-ps processed_pseudogene Interval_169553 chr9 99096712 99096941 + 0 NA intron (ENSMUSG00000032462.14, intron 4 of 23) protein_coding-intron (ENSMUSG00000032462.14, intron 4 of 23) 43099 ENSMUSG00000032462.14 ENSMUSG00000032462 ENSMUST00000124723 Pik3cb protein_coding Interval_49038 chr13 107133825 107134341 + 0 NA Intergenic Intergenic 70390 ENSMUSG00000114311.1 ENSMUSG00000114311 ENSMUST00000224729 Gm31452 lincRNA Interval_14212 chr10 28907209 28908001 + 0 NA intron (ENSMUSG00000090126.1, intron 1 of 1) transcribed_processed_pseudogene-intron (ENSMUSG00000090126.1, intron 1 of 1) -12892 ENSMUSG00000111991.1 ENSMUSG00000111991 ENSMUST00000219942 Gm47835 unprocessed_pseudogene Interval_75875 chr17 72439545 72440053 + 0 NA intron (ENSMUSG00000055471.7, intron 1 of 3) protein_coding-intron (ENSMUSG00000055471.7, intron 1 of 28) 59619 ENSMUSG00000089487.1 ENSMUSG00000089487 ENSMUST00000158862 Gm24736 snRNA Interval_56219 chr14 113359566 113359781 + 0 NA Intergenic Intergenic 45065 ENSMUSG00000058126.7 ENSMUSG00000058126 ENSMUST00000072359 Tpm3-rs7 protein_coding Interval_58027 chr15 26623008 26623724 + 0 NA intron (ENSMUSG00000115433.1, intron 4 of 5) protein_coding-intron (ENSMUSG00000043556.10, intron 2 of 3) 13863 ENSMUSG00000115433.1 ENSMUSG00000115433 ENSMUST00000228205 Gm49267 antisense Interval_43978 chr13 38659193 38660712 + 0 NA promoter-TSS (ENSMUSG00000001707.8) protein_coding-promoter-TSS (ENSMUSG00000001707.8) -942 ENSMUSG00000001707.8 ENSMUSG00000001707 ENSMUST00000224487 Eef1e1 protein_coding Interval_106544 chr3 97129080 97130434 + 0 NA Intergenic Intergenic -3644 ENSMUSG00000106324.1 ENSMUSG00000106324 ENSMUST00000199013 Gm43222 processed_pseudogene Interval_72989 chr17 33998898 34001283 + 0 NA promoter-TSS (ENSMUSG00000061232.16) protein_coding-promoter-TSS (ENSMUSG00000061232.16) 161 ENSMUSG00000061232.16 ENSMUSG00000061232 ENSMUST00000236877 H2-K1 protein_coding Interval_74193 chr17 47038657 47039442 + 0 NA Intergenic Intergenic 3990 ENSMUSG00000062472.6 ENSMUSG00000062472 ENSMUST00000075152 Gm4945 processed_pseudogene Interval_137001 chr6 65896301 65897509 + 0 NA intron (ENSMUSG00000029913.14, intron 12 of 13) protein_coding-intron (ENSMUSG00000029913.14, intron 8 of 10) 14126 ENSMUSG00000092394.1 ENSMUSG00000092394 ENSMUST00000061905 Gm20445 processed_pseudogene Interval_73457 chr17 37461732 37461967 + 0 NA intron (ENSMUSG00000029184.5, intron 2 of 2) protein_coding-intron (ENSMUSG00000029184.5, intron 2 of 2) 2876 ENSMUSG00000029184.5 ENSMUSG00000029184 ENSMUST00000031086 Olfr109 protein_coding Interval_53388 chr14 56844522 56844769 + 0 NA Intergenic Intergenic -7489 ENSMUSG00000077685.1 ENSMUSG00000077685 ENSMUST00000104497 Gm22498 snoRNA Interval_104264 chr3 62379905 62380267 + 0 NA TTS (ENSMUSG00000036885.14) protein_coding-TTS (ENSMUSG00000036885.14) -39554 ENSMUSG00000103502.1 ENSMUSG00000103502 ENSMUST00000192267 9330121J05Rik antisense Interval_56443 chr14 118794297 118796497 + 0 NA intron (ENSMUSG00000022132.15, intron 1 of 3) protein_coding-intron (ENSMUSG00000022132.15, intron 1 of 4) 20245 ENSMUSG00000088105.1 ENSMUSG00000088105 ENSMUST00000157480 Gm22379 snoRNA Interval_143165 chr7 4091327 4091544 + 0 NA intron (ENSMUSG00000086155.7, intron 5 of 6) antisense-intron (ENSMUSG00000086155.7, intron 5 of 6) -10455 ENSMUSG00000075719.1 ENSMUSG00000075719 ENSMUST00000097237 Gm23741 snRNA Interval_101803 chr3 9619822 9620822 + 0 NA Intergenic Intergenic -36198 ENSMUSG00000103876.1 ENSMUSG00000103876 ENSMUST00000195844 Gm17806 processed_pseudogene Interval_75455 chr17 66683109 66683792 + 0 NA exon (ENSMUSG00000033278.10, exon 31 of 33) protein_coding-exon (ENSMUSG00000033278.10, exon 31 of 33) -1256 ENSMUSG00000117065.1 ENSMUSG00000117065 ENSMUST00000232933 Gm49941 processed_pseudogene Interval_56069 chr14 105295985 105296415 + 0 NA intron (ENSMUSG00000053253.16, intron 4 of 7) protein_coding-intron (ENSMUSG00000053253.16, intron 1 of 4) -3216 ENSMUSG00000086260.1 ENSMUSG00000086260 ENSMUST00000145241 Gm16259 processed_pseudogene Interval_15585 chr10 51893075 51893593 + 0 NA intron (ENSMUSG00000112659.1, intron 2 of 2) lincRNA-intron (ENSMUSG00000112659.1, intron 2 of 2) 4709 ENSMUSG00000088198.1 ENSMUSG00000088198 ENSMUST00000157573 Gm23906 snoRNA Interval_103963 chr3 55586636 55586944 + 0 NA Intergenic Intergenic -4060 ENSMUSG00000106334.1 ENSMUSG00000106334 ENSMUST00000198856 Gm43549 lincRNA Interval_35398 chr12 21330995 21332081 + 0 NA intron (ENSMUSG00000052593.16, intron 11 of 15) protein_coding-intron (ENSMUSG00000052593.16, intron 14 of 18) 15124 ENSMUSG00000062054.7 ENSMUSG00000062054 ENSMUST00000222344 Iah1 protein_coding Interval_86398 chr19 40235389 40235962 + 0 NA intron (ENSMUSG00000055044.12, intron 5 of 5) protein_coding-intron (ENSMUSG00000055044.12, intron 4 of 6) -4870 ENSMUSG00000055044.12 ENSMUSG00000055044 ENSMUST00000182636 Pdlim1 protein_coding Interval_17249 chr10 75277672 75278570 + 0 NA intron (ENSMUSG00000033444.14, intron 12 of 15) protein_coding-intron (ENSMUSG00000033444.14, intron 12 of 15) 4914 ENSMUSG00000112116.1 ENSMUSG00000112116 ENSMUST00000218702 Gm46234 processed_pseudogene Interval_75395 chr17 66337271 66338340 + 0 NA exon (ENSMUSG00000052105.17, exon 14 of 14) protein_coding-exon (ENSMUSG00000052105.17, exon 14 of 14) -18293 ENSMUSG00000117010.1 ENSMUSG00000117010 ENSMUST00000233050 Gm49933 processed_pseudogene Interval_95789 chr2 116295955 116296173 + 0 NA Intergenic Intergenic -219968 ENSMUSG00000103562.1 ENSMUSG00000103562 ENSMUST00000195368 2810405F15Rik TEC Interval_17132 chr10 71855408 71855979 + 0 NA Intergenic Intergenic -42343 ENSMUSG00000077142.1 ENSMUSG00000077142 ENSMUST00000103954 Gm22937 snoRNA Interval_42796 chr13 19622634 19623964 + 0 NA promoter-TSS (ENSMUSG00000021319.7) protein_coding-promoter-TSS (ENSMUSG00000021319.7) -1456 ENSMUSG00000021319.7 ENSMUSG00000021319 ENSMUST00000222992 Sfrp4 protein_coding Interval_77894 chr18 5093078 5093301 + 0 NA intron (ENSMUSG00000024236.18, intron 23 of 37) protein_coding-intron (ENSMUSG00000024236.18, intron 20 of 34) 58023 ENSMUSG00000024236.18 ENSMUSG00000024236 ENSMUST00000129543 Svil protein_coding Interval_78798 chr18 20691498 20692367 + 0 NA intron (ENSMUSG00000056124.5, intron 6 of 8) protein_coding-intron (ENSMUSG00000056124.5, intron 6 of 8) -8969 ENSMUSG00000091449.3 ENSMUSG00000091449 ENSMUST00000165229 Gm10269 processed_pseudogene Interval_17445 chr10 76784336 76785537 + 0 NA intron (ENSMUSG00000001120.15, intron 2 of 6) protein_coding-intron (ENSMUSG00000001120.15, intron 10 of 15) 3486 ENSMUSG00000001120.15 ENSMUSG00000001120 ENSMUST00000165571 Pcbp3 protein_coding Interval_122968 chr5 28055314 28056065 + 0 NA promoter-TSS (ENSMUSG00000097673.1) lincRNA-promoter-TSS (ENSMUSG00000097673.1) -230 ENSMUSG00000097673.1 ENSMUSG00000097673 ENSMUST00000181503 Gm26608 lincRNA Interval_158361 chr8 82863168 82864731 + 0 NA exon (ENSMUSG00000047747.10, exon 1 of 7) protein_coding-exon (ENSMUSG00000047747.10, exon 1 of 7) 135 ENSMUSG00000047747.10 ENSMUSG00000047747 ENSMUST00000211714 Rnf150 protein_coding Interval_101454 chr2 181530066 181532717 + 0 NA intron (ENSMUSG00000000826.16, intron 2 of 5) protein_coding-intron (ENSMUSG00000000826.16, intron 1 of 4) 10579 ENSMUSG00000000826.16 ENSMUSG00000000826 ENSMUST00000141523 Dnajc5 protein_coding Interval_64328 chr16 10530378 10530745 + 0 NA exon (ENSMUSG00000038055.12, exon 2 of 2) protein_coding-exon (ENSMUSG00000038055.12, exon 2 of 2) 12493 ENSMUSG00000038055.12 ENSMUSG00000038055 ENSMUST00000038281 Dexi protein_coding Interval_9992 chr1 164721491 164722962 + 0 NA Intergenic Intergenic -9685 ENSMUSG00000102163.1 ENSMUSG00000102163 ENSMUST00000193985 Gm36945 lincRNA Interval_56011 chr14 104203204 104203478 + 0 NA Intergenic Intergenic -176199 ENSMUSG00000115727.1 ENSMUSG00000115727 ENSMUST00000227414 4930432J09Rik lincRNA Interval_81546 chr18 61619183 61620048 + 0 NA Intergenic Intergenic -20038 ENSMUSG00000098098.7 ENSMUSG00000098098 ENSMUST00000183087 Bvht lincRNA Interval_174026 chrX 130459632 130461307 + 0 NA intron (ENSMUSG00000034480.18, intron 26 of 26) protein_coding-intron (ENSMUSG00000034480.18, intron 26 of 26) 53320 ENSMUSG00000083920.1 ENSMUSG00000083920 ENSMUST00000117820 Gm14987 processed_pseudogene Interval_88753 chr2 10300226 10301488 + 0 NA Intergenic Intergenic -71591 ENSMUSG00000061186.15 ENSMUSG00000061186 ENSMUST00000041105 Sfmbt2 protein_coding Interval_81464 chr18 60923746 60924122 + 0 NA Intergenic Intergenic -3015 ENSMUSG00000024617.16 ENSMUSG00000024617 ENSMUST00000039904 Camk2a protein_coding Interval_35456 chr12 22004549 22005274 + 0 NA Intergenic Intergenic -36002 ENSMUSG00000094691.1 ENSMUSG00000094691 ENSMUST00000177620 Gm22908 miRNA Interval_13820 chr10 23034634 23034852 + 0 NA Intergenic Intergenic -78159 ENSMUSG00000112091.1 ENSMUSG00000112091 ENSMUST00000218257 Gm47787 processed_pseudogene Interval_24794 chr11 38059334 38059530 + 0 NA Intergenic Intergenic -22169 ENSMUSG00000093184.1 ENSMUSG00000093184 ENSMUST00000175443 Gm25693 miRNA Interval_37513 chr12 69485671 69486383 + 0 NA Intergenic Intergenic -10480 ENSMUSG00000113035.1 ENSMUSG00000113035 ENSMUST00000222980 5830428M24Rik processed_transcript Interval_17523 chr10 77492081 77493142 + 0 NA intron (ENSMUSG00000032977.9, intron 4 of 5) protein_coding-intron (ENSMUSG00000032977.9, intron 4 of 5) 22961 ENSMUSG00000032977.9 ENSMUSG00000032977 ENSMUST00000217681 Fam207a protein_coding Interval_124654 chr5 52871631 52871882 + 0 NA Intergenic Intergenic 16409 ENSMUSG00000029176.13 ENSMUSG00000029176 ENSMUST00000138629 Anapc4 protein_coding Interval_18608 chr10 88406985 88407492 + 0 NA intron (ENSMUSG00000035311.16, intron 3 of 5) protein_coding-intron (ENSMUSG00000035311.16, intron 2 of 20) -28806 ENSMUSG00000035311.16 ENSMUSG00000035311 ENSMUST00000155306 Gnptab protein_coding Interval_98237 chr2 150317687 150318455 + 0 NA intron (ENSMUSG00000095315.2, intron 1 of 3) protein_coding-intron (ENSMUSG00000063364.10, intron 3 of 3) 6640 ENSMUSG00000095315.2 ENSMUSG00000095315 ENSMUST00000133235 Gm10130 protein_coding Interval_117939 chr4 127206741 127207040 + 0 NA intron (ENSMUSG00000042388.14, intron 1 of 2) protein_coding-intron (ENSMUSG00000042388.14, intron 5 of 11) 3584 ENSMUSG00000042388.14 ENSMUSG00000042388 ENSMUST00000137062 Dlgap3 protein_coding Interval_83572 chr18 89897293 89897486 + 0 NA Intergenic Intergenic 46923 ENSMUSG00000098126.1 ENSMUSG00000098126 ENSMUST00000182270 Gm27037 processed_pseudogene Interval_139924 chr6 112778155 112778639 + 0 NA intron (ENSMUSG00000030257.16, intron 5 of 21) protein_coding-intron (ENSMUSG00000030257.16, intron 5 of 9) 51062 ENSMUSG00000030257.16 ENSMUSG00000030257 ENSMUST00000143475 Srgap3 protein_coding Interval_108406 chr3 126723687 126723894 + 0 NA intron (ENSMUSG00000053819.16, intron 3 of 20) protein_coding-intron (ENSMUSG00000053819.16, intron 3 of 18) -13707 ENSMUSG00000105378.1 ENSMUSG00000105378 ENSMUST00000199936 Gm42515 TEC Interval_65532 chr16 23102439 23103365 + 0 NA Intergenic Intergenic -4857 ENSMUSG00000022884.16 ENSMUSG00000022884 ENSMUST00000144493 Eif4a2 protein_coding Interval_68564 chr16 78806519 78806734 + 0 NA Intergenic Intergenic 48893 ENSMUSG00000116730.1 ENSMUSG00000116730 ENSMUST00000232014 4930403O18Rik TEC Interval_13289 chr10 14196014 14196423 + 0 NA promoter-TSS (ENSMUSG00000112266.1) lincRNA-promoter-TSS (ENSMUSG00000112266.1) -797 ENSMUSG00000112266.1 ENSMUSG00000112266 ENSMUST00000218190 Gm48843 lincRNA Interval_139538 chr6 100869038 100869346 + 0 NA exon (ENSMUSG00000052144.8, exon 9 of 9) protein_coding-exon (ENSMUSG00000052144.8, exon 9 of 9) 16707 ENSMUSG00000052144.8 ENSMUSG00000052144 ENSMUST00000203067 Ppp4r2 protein_coding Interval_172152 chrX 8033151 8033637 + 0 NA promoter-TSS (ENSMUSG00000083518.1) processed_pseudogene-promoter-TSS (ENSMUSG00000083518.1) -818 ENSMUSG00000083518.1 ENSMUSG00000083518 ENSMUST00000117804 Gm9429 processed_pseudogene Interval_138478 chr6 88531542 88531820 + 0 NA Intergenic Intergenic 12668 ENSMUSG00000107698.1 ENSMUSG00000107698 ENSMUST00000203376 Gm44430 TEC Interval_53416 chr14 57154921 57155759 + 0 NA Intergenic Intergenic 23820 ENSMUSG00000114530.1 ENSMUSG00000114530 ENSMUST00000225618 Gm48725 processed_pseudogene Interval_56241 chr14 114754231 114755028 + 0 NA Intergenic Intergenic 66596 ENSMUSG00000103140.1 ENSMUSG00000103140 ENSMUST00000194590 Gm37495 TEC Interval_888 chr1 13015142 13016289 + 0 NA Intergenic Intergenic -24538 ENSMUSG00000025938.16 ENSMUSG00000025938 ENSMUST00000191566 Slco5a1 protein_coding Interval_95300 chr2 105940867 105941086 + 0 NA intron (ENSMUSG00000042670.5, intron 5 of 6) protein_coding-intron (ENSMUSG00000042670.5, intron 5 of 6) 36338 ENSMUSG00000042670.5 ENSMUSG00000042670 ENSMUST00000037499 Immp1l protein_coding Interval_154276 chr8 13966947 13967689 + 0 NA intron (ENSMUSG00000050052.12, intron 2 of 3) protein_coding-intron (ENSMUSG00000050052.12, intron 1 of 2) 7375 ENSMUSG00000050052.12 ENSMUSG00000050052 ENSMUST00000119182 Tdrp protein_coding Interval_131658 chr5 139110304 139111133 + 0 NA intron (ENSMUSG00000025855.13, intron 2 of 2) protein_coding-intron (ENSMUSG00000025855.13, intron 2 of 10) 39283 ENSMUSG00000025855.13 ENSMUSG00000025855 ENSMUST00000130180 Prkar1b protein_coding Interval_101313 chr2 180346825 180347550 + 0 NA Intergenic Intergenic -12488 ENSMUSG00000015627.5 ENSMUSG00000015627 ENSMUST00000015771 Gata5 protein_coding Interval_39442 chr12 87426627 87427423 + 0 NA exon (ENSMUSG00000079036.10, exon 6 of 6) protein_coding-exon (ENSMUSG00000079036.10, exon 6 of 6) 6514 ENSMUSG00000114103.1 ENSMUSG00000114103 ENSMUST00000220777 Gm8557 processed_pseudogene Interval_34215 chr11 121332337 121333277 + 0 NA intron (ENSMUSG00000025173.13, intron 6 of 6) protein_coding-intron (ENSMUSG00000025173.13, intron 6 of 9) 8381 ENSMUSG00000025173.13 ENSMUSG00000025173 ENSMUST00000127373 Wdr45b protein_coding Interval_50886 chr14 20472094 20472401 + 0 NA promoter-TSS (ENSMUSG00000021814.17) protein_coding-promoter-TSS (ENSMUSG00000021814.17) -13078 ENSMUSG00000021814.17 ENSMUSG00000021814 ENSMUST00000225132 Anxa7 protein_coding Interval_42602 chr13 16586383 16586645 + 0 NA Intergenic Intergenic -52693 ENSMUSG00000113972.1 ENSMUSG00000113972 ENSMUST00000222545 Gm48497 processed_pseudogene Interval_50963 chr14 21253987 21254265 + 0 NA intron (ENSMUSG00000039197.10, intron 6 of 7) protein_coding-intron (ENSMUSG00000039197.10, intron 6 of 10) -9498 ENSMUSG00000088456.1 ENSMUSG00000088456 ENSMUST00000157831 Gm26372 misc_RNA Interval_116575 chr4 115826890 115828679 + 0 NA promoter-TSS (ENSMUSG00000028709.3) protein_coding-promoter-TSS (ENSMUSG00000028709.3) -874 ENSMUSG00000028709.3 ENSMUSG00000028709 ENSMUST00000148409 Mob3c protein_coding Interval_83492 chr18 87420953 87421764 + 0 NA Intergenic Intergenic 53313 ENSMUSG00000117969.1 ENSMUSG00000117969 ENSMUST00000235146 Gm5826 processed_pseudogene Interval_122944 chr5 27708230 27708516 + 0 NA intron (ENSMUSG00000061576.15, intron 17 of 25) protein_coding-intron (ENSMUSG00000061576.15, intron 17 of 25) 83318 ENSMUSG00000002221.11 ENSMUSG00000002221 ENSMUST00000199714 Paxip1 protein_coding Interval_99567 chr2 163273928 163274365 + 0 NA intron (ENSMUSG00000074607.11, intron 2 of 8) protein_coding-intron (ENSMUSG00000074607.11, intron 2 of 8) 48692 ENSMUSG00000074607.11 ENSMUSG00000074607 ENSMUST00000148599 Tox2 protein_coding Interval_156529 chr8 49664293 49664576 + 0 NA Intergenic Intergenic 143010 ENSMUSG00000110688.1 ENSMUSG00000110688 ENSMUST00000212088 Gm45696 TEC Interval_24976 chr11 42307357 42307674 + 0 NA exon (ENSMUSG00000020428.13, exon 9 of 9) protein_coding-exon (ENSMUSG00000020428.13, exon 9 of 9) 13536 ENSMUSG00000020428.13 ENSMUSG00000020428 ENSMUST00000109286 Gabra6 protein_coding Interval_17708 chr10 79675239 79676169 + 0 NA TTS (ENSMUSG00000020308.7) protein_coding-TTS (ENSMUSG00000020308.7) 6294 ENSMUSG00000020308.7 ENSMUSG00000020308 ENSMUST00000220175 Tpgs1 protein_coding Interval_77198 chr17 87306574 87306825 + 0 NA intron (ENSMUSG00000036918.16, intron 2 of 18) protein_coding-intron (ENSMUSG00000036918.16, intron 3 of 19) 23751 ENSMUSG00000036918.16 ENSMUSG00000036918 ENSMUST00000148126 Ttc7 protein_coding Interval_146427 chr7 45825714 45825999 + 0 NA TTS (ENSMUSG00000053801.18) protein_coding-TTS (ENSMUSG00000053801.18) -2512 ENSMUSG00000058743.6 ENSMUSG00000058743 ENSMUST00000210232 Kcnj14 protein_coding Interval_13199 chr10 12993483 12994149 + 0 NA Intergenic Intergenic -11527 ENSMUSG00000078348.4 ENSMUSG00000078348 ENSMUST00000105139 Sf3b5 protein_coding Interval_20745 chr10 120699094 120699566 + 0 NA promoter-TSS (ENSMUSG00000112716.1) lincRNA-promoter-TSS (ENSMUSG00000112716.1) -127 ENSMUSG00000112716.1 ENSMUSG00000112716 ENSMUST00000219022 4930471E19Rik lincRNA Interval_151536 chr7 123344476 123345828 + 0 NA intron (ENSMUSG00000030766.15, intron 1 of 19) protein_coding-intron (ENSMUSG00000030766.15, intron 1 of 18) 24699 ENSMUSG00000030766.15 ENSMUSG00000030766 ENSMUST00000205805 Arhgap17 protein_coding Interval_91507 chr2 39754171 39754543 + 0 NA Intergenic Intergenic 30362 ENSMUSG00000107699.1 ENSMUSG00000107699 ENSMUST00000204346 Gm43970 TEC Interval_92281 chr2 58105478 58106118 + 0 NA Intergenic Intergenic -2262 ENSMUSG00000053472.3 ENSMUSG00000053472 ENSMUST00000121169 Gm13534 processed_pseudogene Interval_165007 chr9 43834972 43835368 + 0 NA Intergenic Intergenic 70832 ENSMUSG00000088044.1 ENSMUSG00000088044 ENSMUST00000157419 Gm23326 snRNA Interval_42170 chr13 9455030 9455310 + 0 NA intron (ENSMUSG00000048264.16, intron 1 of 36) protein_coding-intron (ENSMUSG00000048264.16, intron 1 of 38) 9270 ENSMUSG00000112948.1 ENSMUSG00000112948 ENSMUST00000223468 Gm48871 TEC Interval_141450 chr6 128348483 128349262 + 0 NA exon (ENSMUSG00000108267.1, exon 1 of 1) sense_intronic-exon (ENSMUSG00000108267.1, exon 1 of 1) 1282 ENSMUSG00000108267.1 ENSMUSG00000108267 ENSMUST00000205083 Gm44190 sense_intronic Interval_98602 chr2 153525993 153526321 + 0 NA intron (ENSMUSG00000061411.12, intron 1 of 10) protein_coding-intron (ENSMUSG00000061411.12, intron 1 of 10) 33367 ENSMUSG00000079001.1 ENSMUSG00000079001 ENSMUST00000109783 4930404H24Rik protein_coding Interval_55110 chr14 78207352 78208915 + 0 NA Intergenic Intergenic 8760 ENSMUSG00000115552.1 ENSMUSG00000115552 ENSMUST00000228898 Gm48959 processed_pseudogene Interval_105442 chr3 86538658 86539954 + 0 NA intron (ENSMUSG00000028080.16, intron 37 of 38) protein_coding-intron (ENSMUSG00000028080.16, intron 38 of 56) 9323 ENSMUSG00000057777.4 ENSMUSG00000057777 ENSMUST00000191695 Mab21l2 protein_coding Interval_158703 chr8 85432256 85433240 + 0 NA promoter-TSS (ENSMUSG00000036934.9) protein_coding-promoter-TSS (ENSMUSG00000036934.9) 62 ENSMUSG00000103341.1 ENSMUSG00000103341 ENSMUST00000195451 1700051O22Rik TEC Interval_51386 chr14 27149459 27150502 + 0 NA intron (ENSMUSG00000021895.10, intron 2 of 13) protein_coding-intron (ENSMUSG00000021895.10, intron 2 of 13) 35081 ENSMUSG00000021895.10 ENSMUSG00000021895 ENSMUST00000225494 Arhgef3 protein_coding Interval_25136 chr11 44459754 44459962 + 0 NA intron (ENSMUSG00000041231.15, intron 2 of 3) protein_coding-intron (ENSMUSG00000041231.15, intron 8 of 10) 1495 ENSMUSG00000041231.15 ENSMUSG00000041231 ENSMUST00000150032 Ublcp1 protein_coding Interval_112344 chr4 40721951 40723318 + 0 NA promoter-TSS (ENSMUSG00000065452.1) miRNA-promoter-TSS (ENSMUSG00000065452.1) -283 ENSMUSG00000065452.1 ENSMUSG00000065452 ENSMUST00000083518 Mir207 miRNA Interval_7045 chr1 123727706 123728002 + 0 NA intron (ENSMUSG00000036815.17, intron 3 of 25) protein_coding-intron (ENSMUSG00000036815.17, intron 3 of 25) -28704 ENSMUSG00000101985.1 ENSMUSG00000101985 ENSMUST00000185330 Gm28929 processed_pseudogene Interval_86677 chr19 42499762 42499946 + 0 NA Intergenic Intergenic 63254 ENSMUSG00000090117.7 ENSMUSG00000090117 ENSMUST00000162829 Gm16541 antisense Interval_107218 chr3 104689474 104690487 + 0 NA Intergenic Intergenic -10890 ENSMUSG00000089452.1 ENSMUSG00000089452 ENSMUST00000158827 Gm24223 snRNA Interval_34378 chr12 3702485 3703077 + 0 NA intron (ENSMUSG00000071454.13, intron 9 of 20) protein_coding-intron (ENSMUSG00000071454.13, intron 9 of 18) 3603 ENSMUSG00000077830.1 ENSMUSG00000077830 ENSMUST00000104640 Gm26050 miRNA Interval_78987 chr18 23648292 23649704 + 0 NA intron (ENSMUSG00000024302.16, intron 22 of 24) protein_coding-intron (ENSMUSG00000024302.16, intron 18 of 20) 2839 ENSMUSG00000114088.1 ENSMUSG00000114088 ENSMUST00000220789 Gm47898 antisense Interval_5078 chr1 84821647 84822002 + 0 NA exon (ENSMUSG00000104503.1, exon 1 of 1) TEC-exon (ENSMUSG00000104503.1, exon 1 of 1) 2859 ENSMUSG00000104503.1 ENSMUSG00000104503 ENSMUST00000192396 Gm37738 TEC Interval_108342 chr3 124570034 124570359 + 0 NA intron (ENSMUSG00000039174.14, intron 3 of 3) protein_coding-intron (ENSMUSG00000039174.14, intron 5 of 5) 10895 ENSMUSG00000039174.14 ENSMUSG00000039174 ENSMUST00000178953 1700003H04Rik protein_coding Interval_10213 chr1 167237467 167238147 + 0 NA promoter-TSS (ENSMUSG00000026558.13) protein_coding-promoter-TSS (ENSMUSG00000026558.13) -972 ENSMUSG00000026558.13 ENSMUSG00000026558 ENSMUST00000193579 Uck2 protein_coding Interval_163614 chr9 22549587 22550230 + 0 NA intron (ENSMUSG00000035919.16, intron 2 of 5) protein_coding-intron (ENSMUSG00000035919.16, intron 5 of 21) 37451 ENSMUSG00000035919.16 ENSMUSG00000035919 ENSMUST00000124076 Bbs9 protein_coding Interval_9328 chr1 156287707 156287934 + 0 NA intron (ENSMUSG00000060985.15, intron 7 of 17) protein_coding-intron (ENSMUSG00000060985.15, intron 7 of 17) 2927 ENSMUSG00000102372.1 ENSMUSG00000102372 ENSMUST00000195348 A430050A11Rik TEC Interval_98842 chr2 155490933 155491180 + 0 NA exon (ENSMUSG00000027603.15, exon 15 of 15) protein_coding-exon (ENSMUSG00000027603.15, exon 15 of 15) -4687 ENSMUSG00000083341.1 ENSMUSG00000083341 ENSMUST00000120227 Gm14238 processed_pseudogene Interval_9746 chr1 161727110 161727903 + 0 NA promoter-TSS (ENSMUSG00000040323.13) processed_pseudogene-promoter-TSS (ENSMUSG00000040323.13) -17 ENSMUSG00000040323.13 ENSMUSG00000040323 ENSMUST00000151268 Gm15429 processed_pseudogene Interval_172243 chrX 11749538 11749921 + 0 NA Intergenic Intergenic -65605 ENSMUSG00000080811.1 ENSMUSG00000080811 ENSMUST00000117403 Gm14513 processed_pseudogene Interval_29367 chr11 83462108 83463695 + 0 NA promoter-TSS (ENSMUSG00000020682.17) protein_coding-promoter-TSS (ENSMUSG00000020682.17) 170 ENSMUSG00000020682.17 ENSMUSG00000020682 ENSMUST00000138780 Mmp28 protein_coding Interval_68425 chr16 76348194 76348547 + 0 NA intron (ENSMUSG00000048490.14, intron 2 of 3) protein_coding-intron (ENSMUSG00000048490.14, intron 2 of 3) 25456 ENSMUSG00000048490.14 ENSMUSG00000048490 ENSMUST00000145649 Nrip1 protein_coding Interval_65764 chr16 28126525 28126728 + 0 NA Intergenic Intergenic 65449 ENSMUSG00000022523.10 ENSMUSG00000022523 ENSMUST00000231717 Fgf12 protein_coding Interval_4770 chr1 78521059 78521445 + 0 NA intron (ENSMUSG00000012187.13, intron 1 of 1) protein_coding-intron (ENSMUSG00000012187.13, intron 1 of 5) 9440 ENSMUSG00000012187.13 ENSMUSG00000012187 ENSMUST00000125458 Mogat1 protein_coding Interval_134412 chr6 28436907 28437851 + 0 NA intron (ENSMUSG00000029707.6, intron 6 of 6) protein_coding-intron (ENSMUSG00000029707.6, intron 6 of 6) 3415 ENSMUSG00000029707.6 ENSMUSG00000029707 ENSMUST00000147036 Fscn3 protein_coding Interval_152312 chr7 131655587 131656862 + 0 NA intron (ENSMUSG00000030849.18, intron 2 of 6) protein_coding-intron (ENSMUSG00000030849.18, intron 2 of 6) 18658 ENSMUSG00000109066.1 ENSMUSG00000109066 ENSMUST00000207218 Gm4585 processed_pseudogene Interval_44763 chr13 48396389 48396622 + 0 NA intron (ENSMUSG00000114695.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000114695.1, intron 1 of 2) 12007 ENSMUSG00000114695.1 ENSMUSG00000114695 ENSMUST00000225569 Gm48648 lincRNA Interval_129290 chr5 118708172 118708915 + 0 NA exon (ENSMUSG00000107364.1, exon 1 of 1) TEC-exon (ENSMUSG00000107364.1, exon 1 of 1) 1141 ENSMUSG00000107364.1 ENSMUSG00000107364 ENSMUST00000201096 Gm43051 TEC Interval_124042 chr5 37768563 37770012 + 0 NA Intergenic Intergenic 32007 ENSMUSG00000062329.4 ENSMUSG00000062329 ENSMUST00000201048 Cytl1 protein_coding Interval_144992 chr7 29307615 29308292 + 0 NA promoter-TSS (ENSMUSG00000030584.14) protein_coding-promoter-TSS (ENSMUSG00000030584.14) -7110 ENSMUSG00000030584.14 ENSMUSG00000030584 ENSMUST00000207677 Dpf1 protein_coding Interval_75104 chr17 63459874 63460343 + 0 NA intron (ENSMUSG00000023965.13, intron 4 of 8) protein_coding-intron (ENSMUSG00000023965.13, intron 4 of 8) -8397 ENSMUSG00000023965.13 ENSMUSG00000023965 ENSMUST00000090318 Fbxl17 protein_coding Interval_96363 chr2 121985571 121986583 + 0 NA intron (ENSMUSG00000033411.16, intron 5 of 12) protein_coding-intron (ENSMUSG00000033411.16, intron 5 of 12) 29597 ENSMUSG00000033411.16 ENSMUSG00000033411 ENSMUST00000127265 Ctdspl2 protein_coding Interval_174381 chrX 150962830 150963312 + 0 NA Intergenic Intergenic -36912 ENSMUSG00000081194.1 ENSMUSG00000081194 ENSMUST00000117716 Gm8424 processed_pseudogene Interval_105333 chr3 85017583 85018585 + 0 NA intron (ENSMUSG00000102805.5, intron 3 of 9) protein_coding-intron (ENSMUSG00000102805.5, intron 3 of 9) 134612 ENSMUSG00000104290.1 ENSMUSG00000104290 ENSMUST00000194445 Gm38041 processed_pseudogene Interval_103031 chr3 34640856 34641130 + 0 NA intron (ENSMUSG00000105265.4, intron 2 of 2) processed_transcript-intron (ENSMUSG00000105265.4, intron 3 of 3) -2271 ENSMUSG00000104901.1 ENSMUSG00000104901 ENSMUST00000199482 Gm42692 TEC Interval_171603 chr9 119476720 119477797 + 0 NA Intergenic Intergenic 32282 ENSMUSG00000042787.15 ENSMUSG00000042787 ENSMUST00000214462 Exog protein_coding Interval_74326 chr17 48972663 48973739 + 0 NA intron (ENSMUSG00000040490.4, intron 1 of 2) protein_coding-intron (ENSMUSG00000040490.4, intron 1 of 2) 40822 ENSMUSG00000040490.4 ENSMUSG00000040490 ENSMUST00000046254 Lrfn2 protein_coding Interval_59368 chr15 51940228 51940693 + 0 NA Intergenic Intergenic 43373 ENSMUSG00000115616.1 ENSMUSG00000115616 ENSMUST00000226818 Gm48923 lincRNA Interval_43273 chr13 28534498 28534702 + 0 NA intron (ENSMUSG00000085936.7, intron 7 of 7) processed_transcript-intron (ENSMUSG00000085936.7, intron 7 of 7) -17660 ENSMUSG00000085936.7 ENSMUSG00000085936 ENSMUST00000134624 2610307P16Rik processed_transcript Interval_152950 chr7 139992012 139992807 + 0 NA promoter-TSS (ENSMUSG00000025473.16) protein_coding-promoter-TSS (ENSMUSG00000025473.16) 99 ENSMUSG00000025473.16 ENSMUSG00000025473 ENSMUST00000173209 Adam8 protein_coding Interval_130146 chr5 124522886 124523733 + 0 NA intron (ENSMUSG00000029392.12, intron 1 of 6) protein_coding-intron (ENSMUSG00000029392.12, intron 1 of 6) -7824 ENSMUSG00000106662.1 ENSMUSG00000106662 ENSMUST00000198678 Gm43034 TEC Interval_88950 chr2 13399046 13399447 + 0 NA intron (ENSMUSG00000026726.10, intron 28 of 66) protein_coding-intron (ENSMUSG00000026726.10, intron 28 of 66) 56381 ENSMUSG00000026726.10 ENSMUSG00000026726 ENSMUST00000148506 Cubn protein_coding Interval_54135 chr14 65597661 65598324 + 0 NA promoter-TSS (ENSMUSG00000061356.13) protein_coding-promoter-TSS (ENSMUSG00000061356.13) -554 ENSMUSG00000061356.13 ENSMUSG00000061356 ENSMUST00000079469 Nuggc protein_coding Interval_70263 chr17 7820253 7820933 + 0 NA intron (ENSMUSG00000071984.11, intron 1 of 22) protein_coding-intron (ENSMUSG00000071984.11, intron 1 of 3) 6709 ENSMUSG00000071984.11 ENSMUSG00000071984 ENSMUST00000167580 Fndc1 protein_coding Interval_120803 chr4 150732365 150732806 + 0 NA Intergenic Intergenic -53793 ENSMUSG00000085869.1 ENSMUSG00000085869 ENSMUST00000149065 Gm16079 lincRNA Interval_157664 chr8 72152470 72153012 + 0 NA TTS (ENSMUSG00000031799.10) protein_coding-TTS (ENSMUSG00000031799.10) 8114 ENSMUSG00000087502.1 ENSMUSG00000087502 ENSMUST00000156664 Gm16091 processed_transcript Interval_146232 chr7 44863245 44863925 + 0 NA TTS (ENSMUSG00000002963.17) protein_coding-TTS (ENSMUSG00000002963.17) 5089 ENSMUSG00000002963.17 ENSMUSG00000002963 ENSMUST00000144669 Pnkp protein_coding Interval_1775 chr1 33719673 33720722 + 0 NA promoter-TSS (ENSMUSG00000004768.14) protein_coding-promoter-TSS (ENSMUSG00000004768.14) 310 ENSMUSG00000004768.14 ENSMUSG00000004768 ENSMUST00000132066 Rab23 protein_coding Interval_78285 chr18 11593181 11593938 + 0 NA Intergenic Intergenic -31356 ENSMUSG00000117535.1 ENSMUSG00000117535 ENSMUST00000234170 Gm50067 processed_pseudogene Interval_46107 chr13 61788217 61788641 + 0 NA Intergenic Intergenic -11474 ENSMUSG00000095905.2 ENSMUSG00000095905 ENSMUST00000178835 Selenok-ps4 processed_pseudogene Interval_1010 chr1 13941613 13942036 + 0 NA Intergenic Intergenic 9446 ENSMUSG00000089358.1 ENSMUSG00000089358 ENSMUST00000158733 Gm25491 misc_RNA Interval_91851 chr2 50290686 50291303 + 0 NA intron (ENSMUSG00000026766.16, intron 3 of 5) protein_coding-intron (ENSMUSG00000026766.16, intron 4 of 7) 5429 ENSMUSG00000026766.16 ENSMUSG00000026766 ENSMUST00000133768 Mmadhc protein_coding Interval_11920 chr1 187143057 187143555 + 0 NA promoter-TSS (ENSMUSG00000026611.17) protein_coding-promoter-TSS (ENSMUSG00000026611.17) -209 ENSMUSG00000026611.17 ENSMUSG00000026611 ENSMUST00000183469 Spata17 protein_coding Interval_17384 chr10 76237399 76238401 + 0 NA promoter-TSS (ENSMUSG00000020230.15) protein_coding-promoter-TSS (ENSMUSG00000020230.15) -15953 ENSMUSG00000033208.7 ENSMUSG00000033208 ENSMUST00000036387 S100b protein_coding Interval_142470 chr6 142659061 142659301 + 0 NA intron (ENSMUSG00000030249.15, intron 15 of 39) protein_coding-intron (ENSMUSG00000030249.15, intron 15 of 39) 43092 ENSMUSG00000030249.15 ENSMUSG00000030249 ENSMUST00000204870 Abcc9 protein_coding Interval_157081 chr8 65029130 65029761 + 0 NA intron (ENSMUSG00000079042.10, intron 3 of 3) protein_coding-intron (ENSMUSG00000079042.10, intron 2 of 2) 7651 ENSMUSG00000109805.1 ENSMUSG00000109805 ENSMUST00000148141 Gm45886 processed_transcript Interval_33561 chr11 117215633 117215837 + 0 NA intron (ENSMUSG00000059248.13, intron 1 of 11) protein_coding-intron (ENSMUSG00000059248.13, intron 1 of 11) 47702 ENSMUSG00000086050.1 ENSMUSG00000086050 ENSMUST00000123882 Gm16045 antisense Interval_57339 chr15 8963401 8963830 + 0 NA Intergenic Intergenic -4334 ENSMUSG00000048424.17 ENSMUSG00000048424 ENSMUST00000227191 Ranbp3l protein_coding Interval_77300 chr17 87896747 87897075 + 0 NA Intergenic Intergenic -24066 ENSMUSG00000093922.1 ENSMUSG00000093922 ENSMUST00000179601 Rpl36-ps4 protein_coding Interval_103827 chr3 53457509 53458186 + 0 NA TTS (ENSMUSG00000042997.13) protein_coding-TTS (ENSMUSG00000042997.13) 5228 ENSMUSG00000085174.1 ENSMUSG00000085174 ENSMUST00000132485 Gm16206 antisense Interval_123751 chr5 35158632 35159487 + 0 NA Intergenic Intergenic -56545 ENSMUSG00000029103.16 ENSMUSG00000029103 ENSMUST00000132754 Lrpap1 protein_coding Interval_50249 chr14 11288059 11288796 + 0 NA intron (ENSMUSG00000097148.2, intron 3 of 3) protein_coding-intron (ENSMUSG00000097148.2, intron 3 of 3) 5950 ENSMUSG00000099218.1 ENSMUSG00000099218 ENSMUST00000184251 Mir5124b miRNA Interval_112794 chr4 45038685 45039518 + 0 NA intron (ENSMUSG00000048232.12, intron 10 of 10) protein_coding-intron (ENSMUSG00000048232.12, intron 10 of 10) 7839 ENSMUSG00000028318.14 ENSMUSG00000028318 ENSMUST00000153252 Polr1e protein_coding Interval_82371 chr18 73213632 73214178 + 0 NA Intergenic Intergenic -292815 ENSMUSG00000118316.1 ENSMUSG00000118316 ENSMUST00000236243 Gm31908 lincRNA Interval_82930 chr18 79521223 79521639 + 0 NA Intergenic Intergenic 32246 ENSMUSG00000087717.1 ENSMUSG00000087717 ENSMUST00000157092 Gm25824 snoRNA Interval_12948 chr10 8580318 8581721 + 0 NA Intergenic Intergenic -61915 ENSMUSG00000077582.1 ENSMUSG00000077582 ENSMUST00000104394 Gm24374 snRNA Interval_65669 chr16 25015475 25016901 + 0 NA Intergenic Intergenic -43451 ENSMUSG00000096960.1 ENSMUSG00000096960 ENSMUST00000181655 A230028O05Rik lincRNA Interval_100628 chr2 170591731 170592267 + 0 NA intron (ENSMUSG00000043583.1, intron 1 of 1) protein_coding-intron (ENSMUSG00000043583.1, intron 1 of 1) 10018 ENSMUSG00000043583.1 ENSMUSG00000043583 ENSMUST00000062355 4930470P17Rik protein_coding Interval_71649 chr17 25130009 25130262 + 0 NA Intergenic Intergenic -3256 ENSMUSG00000036636.10 ENSMUSG00000036636 ENSMUST00000159426 Clcn7 protein_coding Interval_71126 chr17 19125635 19125961 + 0 NA Intergenic Intergenic -15670 ENSMUSG00000093533.3 ENSMUSG00000093533 ENSMUST00000177481 Vmn2r127 polymorphic_pseudogene Interval_94063 chr2 83340338 83340619 + 0 NA Intergenic Intergenic 13471 ENSMUSG00000081400.1 ENSMUSG00000081400 ENSMUST00000119790 Gm13680 processed_pseudogene Interval_11985 chr1 188321467 188321959 + 0 NA intron (ENSMUSG00000026609.15, intron 3 of 4) protein_coding-intron (ENSMUSG00000026609.15, intron 3 of 70) 59690 ENSMUSG00000026609.15 ENSMUSG00000026609 ENSMUST00000127077 Ush2a protein_coding Interval_170710 chr9 110227166 110227361 + 0 NA intron (ENSMUSG00000032481.17, intron 26 of 28) protein_coding-intron (ENSMUSG00000032481.17, intron 26 of 27) -9131 ENSMUSG00000032481.17 ENSMUSG00000032481 ENSMUST00000200426 Smarcc1 protein_coding Interval_94655 chr2 93063105 93063868 + 0 NA Intergenic Intergenic -17915 ENSMUSG00000075028.12 ENSMUSG00000075028 ENSMUST00000147339 Prdm11 protein_coding Interval_100613 chr2 170468204 170470122 + 0 NA Intergenic Intergenic -5344 ENSMUSG00000084067.3 ENSMUSG00000084067 ENSMUST00000120455 Gm14269 processed_pseudogene Interval_171222 chr9 115320907 115321360 + 0 NA Intergenic Intergenic -10712 ENSMUSG00000032437.10 ENSMUSG00000032437 ENSMUST00000035010 Stt3b protein_coding Interval_55162 chr14 78770244 78770960 + 0 NA Intergenic Intergenic 8499 ENSMUSG00000115514.1 ENSMUSG00000115514 ENSMUST00000226762 Gm49009 processed_pseudogene Interval_5835 chr1 92359589 92360951 + 0 NA Intergenic Intergenic 35760 ENSMUSG00000101265.1 ENSMUSG00000101265 ENSMUST00000187370 Gm29099 lincRNA Interval_122508 chr5 23487106 23487481 + 0 NA TTS (ENSMUSG00000088170.1) misc_RNA-TTS (ENSMUSG00000088170.1) 430 ENSMUSG00000088170.1 ENSMUSG00000088170 ENSMUST00000157545 Gm25219 misc_RNA Interval_54318 chr14 67613915 67614152 + 0 NA Intergenic Intergenic -25241 ENSMUSG00000114514.1 ENSMUSG00000114514 ENSMUST00000224499 Gm47010 processed_pseudogene Interval_161373 chr8 120023610 120024464 + 0 NA intron (ENSMUSG00000031825.16, intron 7 of 14) protein_coding-intron (ENSMUSG00000031825.16, intron 7 of 14) 10829 ENSMUSG00000031825.16 ENSMUSG00000031825 ENSMUST00000144801 Crispld2 protein_coding Interval_48138 chr13 96571026 96571305 + 0 NA intron (ENSMUSG00000021669.15, intron 2 of 6) protein_coding-intron (ENSMUSG00000021669.15, intron 2 of 17) -5465 ENSMUSG00000113379.1 ENSMUSG00000113379 ENSMUST00000221851 Gm46436 TEC Interval_149570 chr7 99659275 99660098 + 0 NA promoter-TSS (ENSMUSG00000085095.2) antisense-promoter-TSS (ENSMUSG00000085095.2) -5258 ENSMUSG00000085095.2 ENSMUSG00000085095 ENSMUST00000148972 Gm15635 antisense Interval_141455 chr6 128380712 128381162 + 0 NA TTS (ENSMUSG00000085739.1) antisense-TTS (ENSMUSG00000085739.1) 3956 ENSMUSG00000108176.1 ENSMUSG00000108176 ENSMUST00000203779 Gm43965 TEC Interval_111555 chr4 23003547 23003746 + 0 NA Intergenic Intergenic -65211 ENSMUSG00000028244.6 ENSMUSG00000028244 ENSMUST00000123729 1700025O08Rik lincRNA Interval_118663 chr4 133062109 133064564 + 0 NA exon (ENSMUSG00000037692.14, exon 5 of 6) protein_coding-exon (ENSMUSG00000037692.14, exon 5 of 6) 51498 ENSMUSG00000037692.14 ENSMUSG00000037692 ENSMUST00000148518 Ahdc1 protein_coding Interval_160502 chr8 110079355 110080299 + 0 NA promoter-TSS (ENSMUSG00000044676.10) protein_coding-promoter-TSS (ENSMUSG00000044676.10) 81 ENSMUSG00000044676.10 ENSMUSG00000044676 ENSMUST00000058804 Zfp612 protein_coding Interval_55062 chr14 77596329 77596618 + 0 NA intron (ENSMUSG00000022012.9, intron 8 of 13) protein_coding-intron (ENSMUSG00000022012.9, intron 11 of 18) 23617 ENSMUSG00000022012.9 ENSMUSG00000022012 ENSMUST00000228845 Enox1 protein_coding Interval_99049 chr2 156852870 156855188 + 0 NA TTS (ENSMUSG00000062175.13) protein_coding-TTS (ENSMUSG00000062175.13) 2087 ENSMUSG00000085741.8 ENSMUSG00000085741 ENSMUST00000187327 5430405H02Rik processed_transcript Interval_125263 chr5 65748376 65749127 + 0 NA Intergenic Intergenic 15115 ENSMUSG00000106978.1 ENSMUSG00000106978 ENSMUST00000202069 N4bp2os processed_transcript Interval_168998 chr9 90103774 90104121 + 0 NA intron (ENSMUSG00000062270.14, intron 3 of 12) protein_coding-intron (ENSMUSG00000062270.14, intron 3 of 12) 10712 ENSMUSG00000062270.14 ENSMUSG00000062270 ENSMUST00000185433 Morf4l1 protein_coding Interval_111168 chr4 13773472 13774158 + 0 NA intron (ENSMUSG00000006586.15, intron 2 of 11) protein_coding-intron (ENSMUSG00000006586.15, intron 1 of 10) 22518 ENSMUSG00000006586.15 ENSMUSG00000006586 ENSMUST00000139736 Runx1t1 protein_coding Interval_81481 chr18 61039570 61040068 + 0 NA Intergenic Intergenic -3620 ENSMUSG00000024619.8 ENSMUSG00000024619 ENSMUST00000025521 Cdx1 protein_coding Interval_125331 chr5 66232293 66233333 + 0 NA Intergenic Intergenic 18066 ENSMUSG00000107125.1 ENSMUSG00000107125 ENSMUST00000201941 Gm3822 TEC Interval_63071 chr15 98952741 98954149 + 0 NA intron (ENSMUSG00000116358.1, intron 1 of 3) protein_coding-intron (ENSMUSG00000072235.6, intron 1 of 3) 106 ENSMUSG00000116358.1 ENSMUSG00000116358 ENSMUST00000134214 Gm49450 protein_coding Interval_44086 chr13 40784244 40784620 + 0 NA Intergenic Intergenic 6392 ENSMUSG00000090475.1 ENSMUSG00000090475 ENSMUST00000164699 Gm6245 processed_pseudogene Interval_73605 chr17 41036034 41037479 + 0 NA Intergenic Intergenic 23301 ENSMUSG00000117272.1 ENSMUSG00000117272 ENSMUST00000233335 Gm49855 processed_pseudogene Interval_88925 chr2 13009198 13011922 + 0 NA exon (ENSMUSG00000049630.6, exon 1 of 2) protein_coding-exon (ENSMUSG00000049630.6, exon 1 of 2) 674 ENSMUSG00000102900.1 ENSMUSG00000102900 ENSMUST00000192416 Gm37811 TEC Interval_100197 chr2 167578115 167579355 + 0 NA intron (ENSMUSG00000085596.1, intron 2 of 3) processed_transcript-intron (ENSMUSG00000085596.1, intron 2 of 3) -12660 ENSMUSG00000081511.1 ENSMUSG00000081511 ENSMUST00000118482 Gm11475 processed_pseudogene Interval_168207 chr9 77963866 77965743 + 0 NA intron (ENSMUSG00000032349.13, intron 3 of 5) protein_coding-intron (ENSMUSG00000032349.13, intron 3 of 7) -27795 ENSMUSG00000111610.1 ENSMUSG00000111610 ENSMUST00000216017 Gm34829 lincRNA Interval_42791 chr13 19585081 19586025 + 0 NA Intergenic Intergenic 34235 ENSMUSG00000002808.7 ENSMUSG00000002808 ENSMUST00000220755 Epdr1 protein_coding Interval_123054 chr5 29274135 29275565 + 0 NA intron (ENSMUSG00000010721.15, intron 8 of 14) protein_coding-intron (ENSMUSG00000010721.15, intron 9 of 16) 5447 ENSMUSG00000105741.1 ENSMUSG00000105741 ENSMUST00000199610 C79130 TEC Interval_147483 chr7 67664282 67664686 + 0 NA intron (ENSMUSG00000030555.16, intron 2 of 3) protein_coding-intron (ENSMUSG00000030555.16, intron 2 of 11) -5568 ENSMUSG00000030555.16 ENSMUSG00000030555 ENSMUST00000154697 Ttc23 protein_coding Interval_41812 chr12 119800037 119800269 + 0 NA Intergenic Intergenic 76489 ENSMUSG00000114137.1 ENSMUSG00000114137 ENSMUST00000222158 Gm48685 unprocessed_pseudogene Interval_72589 chr17 30852502 30852690 + 0 NA intron (ENSMUSG00000033826.10, intron 4 of 5) protein_coding-intron (ENSMUSG00000033826.10, intron 89 of 92) 4840 ENSMUSG00000117760.1 ENSMUSG00000117760 ENSMUST00000237260 Gm41561 antisense Interval_59295 chr15 50869347 50871170 + 0 NA intron (ENSMUSG00000038679.16, intron 1 of 8) protein_coding-intron (ENSMUSG00000038679.16, intron 2 of 6) 18856 ENSMUSG00000084458.1 ENSMUSG00000084458 ENSMUST00000122509 Mir1907 miRNA Interval_49893 chr13 117907752 117908014 + 0 NA intron (ENSMUSG00000021730.8, intron 5 of 7) protein_coding-intron (ENSMUSG00000021730.8, intron 5 of 7) -128731 ENSMUSG00000088155.1 ENSMUSG00000088155 ENSMUST00000157530 Gm26349 snoRNA Interval_162627 chr9 6951248 6951924 + 0 NA intron (ENSMUSG00000047193.16, intron 1 of 2) protein_coding-intron (ENSMUSG00000047193.16, intron 85 of 88) 149743 ENSMUSG00000111464.1 ENSMUSG00000111464 ENSMUST00000213261 Gm48675 processed_pseudogene Interval_111431 chr4 21598165 21598447 + 0 NA Intergenic Intergenic -28074 ENSMUSG00000083654.1 ENSMUSG00000083654 ENSMUST00000118187 Gm11875 processed_pseudogene Interval_151247 chr7 120158080 120159546 + 0 NA intron (ENSMUSG00000109414.1, intron 2 of 2) lincRNA-intron (ENSMUSG00000109414.1, intron 2 of 2) 2698 ENSMUSG00000109414.1 ENSMUSG00000109414 ENSMUST00000208641 4930505K13Rik lincRNA Interval_135776 chr6 47258619 47260140 + 0 NA intron (ENSMUSG00000039419.17, intron 1 of 3) protein_coding-intron (ENSMUSG00000039419.17, intron 1 of 3) 173710 ENSMUSG00000107853.1 ENSMUSG00000107853 ENSMUST00000203098 Gm18584 processed_pseudogene Interval_156137 chr8 45038079 45038768 + 0 NA intron (ENSMUSG00000070047.14, intron 20 of 28) protein_coding-intron (ENSMUSG00000070047.14, intron 19 of 25) -16038 ENSMUSG00000097491.1 ENSMUSG00000097491 ENSMUST00000180753 Gm2366 antisense Interval_111020 chr4 11266973 11267274 + 0 NA intron (ENSMUSG00000045205.16, intron 12 of 12) protein_coding-intron (ENSMUSG00000045205.16, intron 18 of 18) 12296 ENSMUSG00000089185.1 ENSMUSG00000089185 ENSMUST00000158560 Gm22940 snRNA Interval_23112 chr11 19996043 19996441 + 0 NA intron (ENSMUSG00000045671.17, intron 1 of 5) protein_coding-intron (ENSMUSG00000045671.17, intron 1 of 5) 41672 ENSMUSG00000045671.17 ENSMUSG00000045671 ENSMUST00000123036 Spred2 protein_coding Interval_47728 chr13 91883465 91883953 + 0 NA TTS (ENSMUSG00000021708.17) protein_coding-TTS (ENSMUSG00000021708.17) -6824 ENSMUSG00000021622.3 ENSMUSG00000021622 ENSMUST00000022122 Ckmt2 protein_coding Interval_119670 chr4 139126730 139127122 + 0 NA intron (ENSMUSG00000050608.11, intron 1 of 3) protein_coding-intron (ENSMUSG00000050608.11, intron 1 of 3) 4068 ENSMUSG00000050608.11 ENSMUSG00000050608 ENSMUST00000154642 Micos10 protein_coding Interval_74590 chr17 53569916 53570567 + 0 NA intron (ENSMUSG00000000708.14, intron 1 of 17) protein_coding-intron (ENSMUSG00000000708.14, intron 1 of 17) 28422 ENSMUSG00000096517.1 ENSMUSG00000096517 ENSMUST00000180049 Gm6919 processed_pseudogene Interval_129554 chr5 120887071 120889277 + 0 NA promoter-TSS (ENSMUSG00000066861.14) protein_coding-promoter-TSS (ENSMUSG00000066861.14) -561 ENSMUSG00000066861.14 ENSMUSG00000066861 ENSMUST00000161809 Oas1g protein_coding Interval_161745 chr8 122500862 122501279 + 0 NA intron (ENSMUSG00000014444.17, intron 10 of 50) protein_coding-intron (ENSMUSG00000014444.17, intron 10 of 50) 19604 ENSMUSG00000065080.1 ENSMUSG00000065080 ENSMUST00000083146 Gm26497 snRNA Interval_157774 chr8 72976256 72976604 + 0 NA intron (ENSMUSG00000004383.18, intron 7 of 15) protein_coding-intron (ENSMUSG00000004383.18, intron 6 of 14) -40082 ENSMUSG00000093140.1 ENSMUSG00000093140 ENSMUST00000175399 Mir28b miRNA Interval_66514 chr16 34666893 34669287 + 0 NA intron (ENSMUSG00000022832.11, intron 1 of 4) protein_coding-intron (ENSMUSG00000022832.11, intron 2 of 5) 1773 ENSMUSG00000022832.11 ENSMUSG00000022832 ENSMUST00000231612 Ropn1 protein_coding Interval_106108 chr3 93262741 93263340 + 0 NA Intergenic Intergenic -10483 ENSMUSG00000102439.4 ENSMUSG00000102439 ENSMUST00000050758 Flg protein_coding Interval_84391 chr19 10567064 10567686 + 0 NA Intergenic Intergenic -6137 ENSMUSG00000117955.1 ENSMUSG00000117955 ENSMUST00000237729 Gm50205 TEC Interval_78102 chr18 8136394 8137291 + 0 NA Intergenic Intergenic -43737 ENSMUSG00000117490.1 ENSMUSG00000117490 ENSMUST00000234300 Gm35031 lincRNA Interval_131175 chr5 135612172 135612456 + 0 NA Intergenic Intergenic 4985 ENSMUSG00000107029.1 ENSMUSG00000107029 ENSMUST00000201893 Gm43123 TEC Interval_9841 chr1 162895806 162896295 + 0 NA intron (ENSMUSG00000040170.13, intron 2 of 2) protein_coding-intron (ENSMUSG00000040170.13, intron 2 of 8) -15319 ENSMUSG00000040170.13 ENSMUSG00000040170 ENSMUST00000147617 Fmo2 protein_coding Interval_154783 chr8 23330102 23330421 + 0 NA Intergenic Intergenic -40097 ENSMUSG00000077399.1 ENSMUSG00000077399 ENSMUST00000104211 Gm24335 snoRNA Interval_70506 chr17 11172341 11172646 + 0 NA intron (ENSMUSG00000023826.16, intron 2 of 6) protein_coding-intron (ENSMUSG00000023826.16, intron 2 of 6) -76851 ENSMUSG00000103324.1 ENSMUSG00000103324 ENSMUST00000194525 Gm37402 TEC Interval_61358 chr15 81041589 81043138 + 0 NA intron (ENSMUSG00000042292.18, intron 2 of 2) protein_coding-intron (ENSMUSG00000042292.18, intron 2 of 12) 2720 ENSMUSG00000064587.1 ENSMUSG00000064587 ENSMUST00000082653 Gm25131 snRNA Interval_18359 chr10 85197390 85198745 + 0 NA Intergenic Intergenic -46711 ENSMUSG00000020038.10 ENSMUSG00000020038 ENSMUST00000214675 Cry1 protein_coding Interval_96715 chr2 127378083 127379172 + 0 NA Intergenic Intergenic 15419 ENSMUSG00000058620.5 ENSMUSG00000058620 ENSMUST00000071902 Adra2b protein_coding Interval_132407 chr5 144752352 144753251 + 0 NA intron (ENSMUSG00000043388.8, intron 2 of 2) protein_coding-intron (ENSMUSG00000043388.8, intron 2 of 7) 9017 ENSMUSG00000043388.8 ENSMUSG00000043388 ENSMUST00000197254 Tmem130 protein_coding Interval_123654 chr5 34318025 34318215 + 0 NA intron (ENSMUSG00000109572.1, intron 11 of 15) lincRNA-intron (ENSMUSG00000107287.1, intron 1 of 1) 9410 ENSMUSG00000107287.1 ENSMUSG00000107287 ENSMUST00000200791 Gm43458 lincRNA Interval_32046 chr11 104674701 104675367 + 0 NA Intergenic Intergenic 5621 ENSMUSG00000083748.1 ENSMUSG00000083748 ENSMUST00000121389 Gm11662 processed_pseudogene Interval_158362 chr8 82928158 82928702 + 0 NA intron (ENSMUSG00000047747.10, intron 1 of 1) protein_coding-intron (ENSMUSG00000047747.10, intron 1 of 6) -24082 ENSMUSG00000109600.1 ENSMUSG00000109600 ENSMUST00000211678 Gm18212 processed_pseudogene Interval_124091 chr5 38213705 38214086 + 0 NA promoter-TSS (ENSMUSG00000029127.15) protein_coding-promoter-TSS (ENSMUSG00000029127.15) -6633 ENSMUSG00000067367.9 ENSMUSG00000067367 ENSMUST00000131492 Lyar protein_coding Interval_107240 chr3 104845113 104845532 + 0 NA intron (ENSMUSG00000070372.11, intron 1 of 5) protein_coding-intron (ENSMUSG00000070372.11, intron 1 of 9) -2361 ENSMUSG00000070372.11 ENSMUSG00000070372 ENSMUST00000155476 Capza1 protein_coding Interval_114393 chr4 74874609 74875576 + 0 NA Intergenic Intergenic -185768 ENSMUSG00000083659.1 ENSMUSG00000083659 ENSMUST00000121086 Gm11258 processed_pseudogene Interval_119338 chr4 136956001 136957310 + 0 NA intron (ENSMUSG00000028661.8, intron 1 of 16) protein_coding-intron (ENSMUSG00000028661.8, intron 1 of 16) 161 ENSMUSG00000028661.8 ENSMUSG00000028661 ENSMUST00000030420 Epha8 protein_coding Interval_121690 chr5 5326756 5327043 + 0 NA intron (ENSMUSG00000028926.15, intron 2 of 2) protein_coding-intron (ENSMUSG00000028926.15, intron 2 of 14) -15276 ENSMUSG00000104867.1 ENSMUSG00000104867 ENSMUST00000198817 Gm43728 sense_intronic Interval_157890 chr8 75247503 75247805 + 0 NA Intergenic Intergenic 28010 ENSMUSG00000110515.1 ENSMUSG00000110515 ENSMUST00000212828 Gm9644 processed_pseudogene Interval_153902 chr8 10923946 10926210 + 0 NA exon (ENSMUSG00000038917.4, exon 3 of 3) lincRNA-exon (ENSMUSG00000038917.4, exon 3 of 3) 3366 ENSMUSG00000038917.4 ENSMUSG00000038917 ENSMUST00000208615 3930402G23Rik lincRNA Interval_111846 chr4 31882180 31882791 + 0 NA Intergenic Intergenic -103182 ENSMUSG00000028284.13 ENSMUSG00000028284 ENSMUST00000131310 Map3k7 protein_coding Interval_84047 chr19 6947774 6948022 + 0 NA intron (ENSMUSG00000024959.14, intron 2 of 3) protein_coding-intron (ENSMUSG00000024959.14, intron 2 of 3) 5435 ENSMUSG00000024959.14 ENSMUSG00000024959 ENSMUST00000145463 Bad protein_coding Interval_170904 chr9 111879241 111880255 + 0 NA Intergenic Intergenic 38918 ENSMUSG00000111054.1 ENSMUSG00000111054 ENSMUST00000215688 4930545L08Rik lincRNA Interval_162252 chr8 126474116 126475267 + 0 NA exon (ENSMUSG00000090290.2, exon 1 of 30) protein_coding-exon (ENSMUSG00000090290.2, exon 1 of 30) 374 ENSMUSG00000090290.2 ENSMUSG00000090290 ENSMUST00000170518 Tarbp1 protein_coding Interval_93794 chr2 76951513 76951769 + 0 NA intron (ENSMUSG00000051747.15, intron 19 of 312) protein_coding-intron (ENSMUSG00000051747.15, intron 18 of 190) 71055 ENSMUSG00000044033.16 ENSMUSG00000044033 ENSMUST00000111833 Ccdc141 protein_coding Interval_36076 chr12 35191273 35192617 + 0 NA Intergenic Intergenic 2952 ENSMUSG00000076253.1 ENSMUSG00000076253 ENSMUST00000102298 Mir680-3 miRNA Interval_35388 chr12 21255853 21256096 + 0 NA promoter-TSS (ENSMUSG00000092373.1) processed_transcript-promoter-TSS (ENSMUSG00000092373.1) -22 ENSMUSG00000092373.1 ENSMUSG00000092373 ENSMUST00000173157 Gm20535 processed_transcript Interval_97101 chr2 131232168 131234491 + 0 NA promoter-TSS (ENSMUSG00000037523.13) protein_coding-promoter-TSS (ENSMUSG00000037523.13) -8605 ENSMUSG00000037523.13 ENSMUSG00000037523 ENSMUST00000132694 Mavs protein_coding Interval_32514 chr11 108039192 108040459 + 0 NA intron (ENSMUSG00000050965.14, intron 5 of 16) protein_coding-intron (ENSMUSG00000050965.14, intron 5 of 16) -27020 ENSMUSG00000050965.14 ENSMUSG00000050965 ENSMUST00000134725 Prkca protein_coding Interval_149668 chr7 100520447 100521252 + 0 NA Intergenic Intergenic -3167 ENSMUSG00000109560.1 ENSMUSG00000109560 ENSMUST00000208573 Gm8463 processed_pseudogene Interval_107490 chr3 108069125 108070774 + 0 NA Intergenic Intergenic 15446 ENSMUSG00000027889.17 ENSMUSG00000027889 ENSMUST00000153626 Ampd2 protein_coding Interval_138207 chr6 86295751 86297469 + 0 NA Intergenic Intergenic 11723 ENSMUSG00000098175.1 ENSMUSG00000098175 ENSMUST00000182773 Gm7545 processed_pseudogene Interval_165272 chr9 45959103 45959351 + 0 NA Intergenic Intergenic 5126 ENSMUSG00000111329.1 ENSMUSG00000111329 ENSMUST00000216147 A830035O19Rik antisense Interval_56309 chr14 117015020 117016191 + 0 NA intron (ENSMUSG00000058571.11, intron 1 of 9) protein_coding-intron (ENSMUSG00000058571.11, intron 1 of 8) 90074 ENSMUSG00000058571.11 ENSMUSG00000058571 ENSMUST00000078849 Gpc6 protein_coding Interval_136795 chr6 60409154 60412092 + 0 NA Intergenic Intergenic -6916 ENSMUSG00000046764.8 ENSMUSG00000046764 ENSMUST00000203367 A530053G22Rik processed_transcript Interval_56832 chr14 122329944 122330810 + 0 NA intron (ENSMUSG00000025545.10, intron 2 of 7) protein_coding-intron (ENSMUSG00000025545.10, intron 2 of 7) 57783 ENSMUSG00000095311.1 ENSMUSG00000095311 ENSMUST00000175481 Gm25464 snRNA Interval_167946 chr9 74856912 74857517 + 0 NA intron (ENSMUSG00000093662.2, intron 2 of 2) lincRNA-intron (ENSMUSG00000093662.2, intron 2 of 2) -1829 ENSMUSG00000101596.1 ENSMUSG00000101596 ENSMUST00000188354 Gm28182 lincRNA Interval_58738 chr15 37579865 37581369 + 0 NA intron (ENSMUSG00000051359.15, intron 3 of 6) protein_coding-intron (ENSMUSG00000051359.15, intron 3 of 6) -18787 ENSMUSG00000115095.1 ENSMUSG00000115095 ENSMUST00000228636 Gm49311 TEC Interval_24805 chr11 38861675 38862158 + 0 NA Intergenic Intergenic -63639 ENSMUSG00000070249.1 ENSMUSG00000070249 ENSMUST00000093736 Gm23520 snRNA Interval_75806 chr17 71526317 71527651 + 0 NA promoter-TSS (ENSMUSG00000024056.10) protein_coding-promoter-TSS (ENSMUSG00000024056.10) 88 ENSMUSG00000079356.10 ENSMUSG00000079356 ENSMUST00000127676 Mettl4-ps1 transcribed_unprocessed_pseudogene Interval_49367 chr13 111488766 111490732 + 0 NA exon (ENSMUSG00000032745.18, exon 1 of 13) protein_coding-exon (ENSMUSG00000032745.18, exon 1 of 13) -36326 ENSMUSG00000032745.18 ENSMUSG00000032745 ENSMUST00000129638 Gpbp1 protein_coding Interval_85153 chr19 23184669 23185372 + 0 NA Intergenic Intergenic 35589 ENSMUSG00000080626.1 ENSMUSG00000080626 ENSMUST00000116976 Mir1192 miRNA Interval_21077 chr10 125975809 125976094 + 0 NA intron (ENSMUSG00000020105.9, intron 3 of 12) protein_coding-intron (ENSMUSG00000020105.9, intron 3 of 18) 9717 ENSMUSG00000020105.9 ENSMUSG00000020105 ENSMUST00000219974 Lrig3 protein_coding Interval_127633 chr5 105977836 105978327 + 0 NA Intergenic Intergenic 3101 ENSMUSG00000105129.1 ENSMUSG00000105129 ENSMUST00000199576 Gm19566 processed_pseudogene Interval_154608 chr8 22039085 22040209 + 0 NA intron (ENSMUSG00000006567.11, intron 1 of 21) protein_coding-intron (ENSMUSG00000006567.11, intron 1 of 20) 20372 ENSMUSG00000006567.11 ENSMUSG00000006567 ENSMUST00000110738 Atp7b protein_coding Interval_128635 chr5 114420500 114421001 + 0 NA exon (ENSMUSG00000029577.13, exon 28 of 28) protein_coding-exon (ENSMUSG00000029577.13, exon 28 of 28) 16282 ENSMUSG00000098731.1 ENSMUSG00000098731 ENSMUST00000183408 Mir7027 miRNA Interval_92992 chr2 69286081 69286650 + 0 NA intron (ENSMUSG00000027048.15, intron 15 of 28) protein_coding-intron (ENSMUSG00000027048.15, intron 15 of 28) 38058 ENSMUSG00000086819.1 ENSMUSG00000086819 ENSMUST00000126240 Gm13613 antisense Interval_122411 chr5 22326824 22327726 + 0 NA intron (ENSMUSG00000042453.14, intron 1 of 7) protein_coding-intron (ENSMUSG00000042453.14, intron 1 of 63) -7167 ENSMUSG00000090226.1 ENSMUSG00000090226 ENSMUST00000161473 Gm16110 antisense Interval_122632 chr5 24357349 24357789 + 0 NA Intergenic Intergenic -7241 ENSMUSG00000028978.12 ENSMUSG00000028978 ENSMUST00000030834 Nos3 protein_coding Interval_100207 chr2 167634482 167634816 + 0 NA intron (ENSMUSG00000089739.2, intron 5 of 7) protein_coding-intron (ENSMUSG00000089739.2, intron 5 of 7) -2662 ENSMUSG00000078923.10 ENSMUSG00000078923 ENSMUST00000144830 Ube2v1 protein_coding Interval_15649 chr10 52896682 52897120 + 0 NA intron (ENSMUSG00000038602.7, intron 1 of 7) protein_coding-intron (ENSMUSG00000038602.7, intron 1 of 7) -8737 ENSMUSG00000088322.1 ENSMUSG00000088322 ENSMUST00000157697 Gm25664 snRNA Interval_9128 chr1 153884646 153887028 + 0 NA intron (ENSMUSG00000045968.7, intron 1 of 2) protein_coding-intron (ENSMUSG00000045968.7, intron 1 of 2) -5905 ENSMUSG00000047053.5 ENSMUSG00000047053 ENSMUST00000050660 Teddm1a protein_coding Interval_48276 chr13 97603020 97603586 + 0 NA Intergenic Intergenic -6233 ENSMUSG00000114599.1 ENSMUSG00000114599 ENSMUST00000225459 Gm48070 processed_pseudogene Interval_134584 chr6 29754491 29754743 + 0 NA intron (ENSMUSG00000001761.7, intron 3 of 11) protein_coding-intron (ENSMUSG00000001761.7, intron 3 of 11) 3856 ENSMUSG00000081564.1 ENSMUSG00000081564 ENSMUST00000119868 Gm13717 processed_pseudogene Interval_143079 chr6 149123175 149123662 + 0 NA Intergenic Intergenic -6752 ENSMUSG00000067292.3 ENSMUSG00000067292 ENSMUST00000087348 Gm10203 protein_coding Interval_121334 chr4 155054260 155055238 + 0 NA promoter-TSS (ENSMUSG00000029055.17) protein_coding-promoter-TSS (ENSMUSG00000029055.17) 3 ENSMUSG00000029055.17 ENSMUSG00000029055 ENSMUST00000126098 Plch2 protein_coding Interval_11828 chr1 186013263 186013648 + 0 NA Intergenic Intergenic 98918 ENSMUSG00000103056.1 ENSMUSG00000103056 ENSMUST00000195813 Gm38268 TEC Interval_101960 chr3 13335712 13336404 + 0 NA Intergenic Intergenic 47861 ENSMUSG00000102815.1 ENSMUSG00000102815 ENSMUST00000195003 Gm37813 TEC Interval_51427 chr14 27428208 27429757 + 0 NA exon (ENSMUSG00000040651.9, exon 1 of 24) protein_coding-exon (ENSMUSG00000040651.9, exon 1 of 24) -48132 ENSMUSG00000093034.1 ENSMUSG00000093034 ENSMUST00000175293 Gm23633 miRNA Interval_33673 chr11 117860290 117860939 + 0 NA promoter-TSS (ENSMUSG00000070330.2) protein_coding-promoter-TSS (ENSMUSG00000070330.2) -138 ENSMUSG00000070330.2 ENSMUSG00000070330 ENSMUST00000093905 Tmem235 protein_coding Interval_76399 chr17 79946674 79947042 + 0 NA Intergenic Intergenic -12286 ENSMUSG00000117458.1 ENSMUSG00000117458 ENSMUST00000234229 Gm6552 processed_pseudogene Interval_69014 chr16 90129456 90130240 + 0 NA intron (ENSMUSG00000002489.16, intron 1 of 11) protein_coding-intron (ENSMUSG00000002489.16, intron 1 of 11) -33332 ENSMUSG00000116553.1 ENSMUSG00000116553 ENSMUST00000231626 Gm7307 processed_pseudogene Interval_9269 chr1 155695080 155695302 + 0 NA Intergenic Intergenic 56493 ENSMUSG00000026468.14 ENSMUSG00000026468 ENSMUST00000195275 Lhx4 protein_coding Interval_60157 chr15 66673019 66673659 + 0 NA intron (ENSMUSG00000053469.14, intron 3 of 47) protein_coding-intron (ENSMUSG00000053469.14, intron 3 of 47) 42451 ENSMUSG00000072501.5 ENSMUSG00000072501 ENSMUST00000231177 Phf20l1 protein_coding Interval_116160 chr4 108253475 108253709 + 0 NA intron (ENSMUSG00000034636.9, intron 5 of 13) protein_coding-intron (ENSMUSG00000034636.9, intron 5 of 13) -11554 ENSMUSG00000034636.9 ENSMUSG00000034636 ENSMUST00000130508 Zyg11b protein_coding Interval_142854 chr6 146468265 146468828 + 0 NA intron (ENSMUSG00000030287.15, intron 1 of 18) protein_coding-intron (ENSMUSG00000030287.15, intron 2 of 56) -4939 ENSMUSG00000082120.1 ENSMUSG00000082120 ENSMUST00000117133 Gm15720 processed_pseudogene Interval_40641 chr12 106226125 106227769 + 0 NA Intergenic Intergenic 5872 ENSMUSG00000077640.1 ENSMUSG00000077640 ENSMUST00000104452 Gm24986 snoRNA Interval_74038 chr17 46211012 46211242 + 0 NA intron (ENSMUSG00000067150.6, intron 5 of 31) protein_coding-intron (ENSMUSG00000067150.6, intron 5 of 31) 8310 ENSMUSG00000067150.6 ENSMUSG00000067150 ENSMUST00000232971 Xpo5 protein_coding Interval_164317 chr9 35283640 35283870 + 0 NA intron (ENSMUSG00000111746.1, intron 3 of 4) lincRNA-intron (ENSMUSG00000111746.1, intron 3 of 4) -1920 ENSMUSG00000066771.2 ENSMUSG00000066771 ENSMUST00000091097 Gm5614 processed_pseudogene Interval_117117 chr4 119672620 119672979 + 0 NA Intergenic Intergenic -14018 ENSMUSG00000032978.14 ENSMUSG00000032978 ENSMUST00000044426 Guca2b protein_coding Interval_138199 chr6 86153886 86154992 + 0 NA Intergenic Intergenic 7287 ENSMUSG00000107857.1 ENSMUSG00000107857 ENSMUST00000203685 Gm19596 unprocessed_pseudogene Interval_66409 chr16 33707637 33707925 + 0 NA intron (ENSMUSG00000075254.12, intron 2 of 16) protein_coding-intron (ENSMUSG00000075254.12, intron 2 of 16) 23411 ENSMUSG00000075254.12 ENSMUSG00000075254 ENSMUST00000146518 Heg1 protein_coding Interval_90076 chr2 27750470 27751096 + 0 NA intron (ENSMUSG00000015846.15, intron 5 of 9) protein_coding-intron (ENSMUSG00000015846.15, intron 5 of 9) 25564 ENSMUSG00000015846.15 ENSMUSG00000015846 ENSMUST00000148756 Rxra protein_coding Interval_164883 chr9 42791551 42791986 + 0 NA intron (ENSMUSG00000032017.14, intron 3 of 20) protein_coding-intron (ENSMUSG00000032017.14, intron 1 of 18) 70361 ENSMUSG00000076355.2 ENSMUSG00000076355 ENSMUST00000102400 Gm27509 miRNA Interval_53631 chr14 60369772 60370309 + 0 NA Intergenic Intergenic -8246 ENSMUSG00000021986.9 ENSMUSG00000021986 ENSMUST00000239079 Amer2 protein_coding Interval_157190 chr8 67431120 67432170 + 0 NA Intergenic Intergenic -49276 ENSMUSG00000025588.4 ENSMUSG00000025588 ENSMUST00000026677 Nat1 protein_coding Interval_80241 chr18 38486849 38487049 + 0 NA Intergenic Intergenic -5646 ENSMUSG00000118112.1 ENSMUSG00000118112 ENSMUST00000236084 Gm50349 processed_pseudogene Interval_26843 chr11 60997936 60998331 + 0 NA Intergenic Intergenic 66079 ENSMUSG00000018932.9 ENSMUSG00000018932 ENSMUST00000137609 Map2k3 protein_coding Interval_127978 chr5 110038449 110038856 + 0 NA Intergenic Intergenic 32036 ENSMUSG00000066613.14 ENSMUSG00000066613 ENSMUST00000187241 Zfp932 protein_coding Interval_117772 chr4 126147592 126150942 + 0 NA exon (ENSMUSG00000050212.4, exon 3 of 3) protein_coding-exon (ENSMUSG00000050212.4, exon 3 of 3) 1264 ENSMUSG00000050212.4 ENSMUSG00000050212 ENSMUST00000106150 Eva1b protein_coding Interval_80726 chr18 46606349 46607013 + 0 NA intron (ENSMUSG00000057561.10, intron 3 of 3) protein_coding-intron (ENSMUSG00000057561.10, intron 2 of 2) 8980 ENSMUSG00000057561.10 ENSMUSG00000057561 ENSMUST00000236497 Eif1a protein_coding Interval_115337 chr4 97023039 97023504 + 0 NA Intergenic Intergenic 106251 ENSMUSG00000098261.1 ENSMUSG00000098261 ENSMUST00000184022 Gm27521 snRNA Interval_151957 chr7 127776267 127778189 + 0 NA promoter-TSS (ENSMUSG00000042308.14) protein_coding-promoter-TSS (ENSMUSG00000042308.14) 79 ENSMUSG00000042308.14 ENSMUSG00000042308 ENSMUST00000141439 Setd1a protein_coding Interval_112926 chr4 46126498 46127160 + 0 NA intron (ENSMUSG00000035495.15, intron 4 of 5) protein_coding-intron (ENSMUSG00000035495.15, intron 4 of 9) 8649 ENSMUSG00000088069.1 ENSMUSG00000088069 ENSMUST00000157444 Gm23250 misc_RNA Interval_79339 chr18 30697501 30698559 + 0 NA Intergenic Intergenic -89140 ENSMUSG00000117526.1 ENSMUSG00000117526 ENSMUST00000235078 Gm41780 processed_pseudogene Interval_13832 chr10 23480938 23481238 + 0 NA Intergenic Intergenic 128343 ENSMUSG00000111894.1 ENSMUSG00000111894 ENSMUST00000219823 Gm47843 lincRNA Interval_106846 chr3 101283448 101283638 + 0 NA intron (ENSMUSG00000027863.8, intron 1 of 1) protein_coding-intron (ENSMUSG00000027863.8, intron 2 of 4) -3154 ENSMUSG00000027863.8 ENSMUSG00000027863 ENSMUST00000152321 Cd2 protein_coding Interval_149201 chr7 96241385 96243295 + 0 NA intron (ENSMUSG00000048078.16, intron 1 of 32) protein_coding-intron (ENSMUSG00000048078.16, intron 1 of 32) -7084 ENSMUSG00000076143.1 ENSMUSG00000076143 ENSMUST00000102189 Mir708 miRNA Interval_117827 chr4 126455116 126456020 + 0 NA intron (ENSMUSG00000041530.17, intron 8 of 18) protein_coding-intron (ENSMUSG00000041530.17, intron 8 of 18) 12853 ENSMUSG00000041530.17 ENSMUSG00000041530 ENSMUST00000149425 Ago1 protein_coding Interval_22934 chr11 17587939 17588305 + 0 NA Intergenic Intergenic 39836 ENSMUSG00000087833.1 ENSMUSG00000087833 ENSMUST00000157208 Gm23959 misc_RNA Interval_98305 chr2 150909279 150910216 + 0 NA exon (ENSMUSG00000027454.10, exon 1 of 7) protein_coding-exon (ENSMUSG00000027454.10, exon 1 of 7) 4347 ENSMUSG00000027454.10 ENSMUSG00000027454 ENSMUST00000123217 Gins1 protein_coding Interval_5550 chr1 89750299 89751278 + 0 NA intron (ENSMUSG00000055013.16, intron 11 of 16) protein_coding-intron (ENSMUSG00000055013.16, intron 11 of 17) -38375 ENSMUSG00000055013.16 ENSMUSG00000055013 ENSMUST00000212924 Agap1 protein_coding Interval_133661 chr6 8208812 8209828 + 0 NA promoter-TSS (ENSMUSG00000042447.13) protein_coding-promoter-TSS (ENSMUSG00000042447.13) -20185 ENSMUSG00000042447.13 ENSMUSG00000042447 ENSMUST00000161134 Mios protein_coding Interval_117483 chr4 124053760 124054957 + 0 NA Intergenic Intergenic 128124 ENSMUSG00000082515.1 ENSMUSG00000082515 ENSMUST00000118389 Gm12902 processed_pseudogene Interval_7191 chr1 127658671 127658885 + 0 NA intron (ENSMUSG00000026347.13, intron 2 of 7) protein_coding-intron (ENSMUSG00000026347.13, intron 2 of 8) 20770 ENSMUSG00000026347.13 ENSMUSG00000026347 ENSMUST00000162406 Tmem163 protein_coding Interval_103326 chr3 38822787 38823273 + 0 NA Intergenic Intergenic 65229 ENSMUSG00000086181.1 ENSMUSG00000086181 ENSMUST00000153659 C230034O21Rik antisense Interval_87403 chr19 49010440 49010775 + 0 NA Intergenic Intergenic 18523 ENSMUSG00000117996.1 ENSMUSG00000117996 ENSMUST00000235703 Gm50441 lincRNA Interval_158953 chr8 88205687 88206395 + 0 NA intron (ENSMUSG00000036779.12, intron 2 of 12) protein_coding-intron (ENSMUSG00000036779.12, intron 2 of 11) 31481 ENSMUSG00000062704.3 ENSMUSG00000062704 ENSMUST00000185395 9430002A10Rik lincRNA Interval_4084 chr1 67744826 67745017 + 0 NA Intergenic Intergenic -47560 ENSMUSG00000085075.1 ENSMUSG00000085075 ENSMUST00000147834 Gm15669 lincRNA Interval_167889 chr9 73566256 73567136 + 0 NA intron (ENSMUSG00000062151.13, intron 22 of 32) protein_coding-intron (ENSMUSG00000062151.13, intron 21 of 31) -12826 ENSMUSG00000103832.1 ENSMUSG00000103832 ENSMUST00000195250 Gm37611 TEC Interval_29941 chr11 87920449 87921921 + 0 NA promoter-TSS (ENSMUSG00000060787.9) protein_coding-promoter-TSS (ENSMUSG00000060787.9) -223 ENSMUSG00000060787.9 ENSMUSG00000060787 ENSMUST00000074874 Olfr464 protein_coding Interval_55249 chr14 79631515 79633146 + 0 NA exon (ENSMUSG00000022024.10, exon 13 of 13) protein_coding-exon (ENSMUSG00000022024.10, exon 13 of 13) 13180 ENSMUSG00000022025.13 ENSMUSG00000022025 ENSMUST00000167524 Cnmd protein_coding Interval_99528 chr2 162973740 162975220 + 0 NA TTS (ENSMUSG00000035576.13) protein_coding-TTS (ENSMUSG00000035576.13) 8781 ENSMUSG00000080962.1 ENSMUSG00000080962 ENSMUST00000117318 Gm11453 processed_pseudogene Interval_102431 chr3 25652962 25653707 + 0 NA intron (ENSMUSG00000063887.13, intron 5 of 7) protein_coding-intron (ENSMUSG00000063887.13, intron 3 of 5) 46969 ENSMUSG00000102397.1 ENSMUSG00000102397 ENSMUST00000193993 Gm37573 sense_intronic Interval_73958 chr17 45671244 45672253 + 0 NA intron (ENSMUSG00000036026.15, intron 10 of 10) protein_coding-intron (ENSMUSG00000036026.15, intron 10 of 23) 8229 ENSMUSG00000086472.1 ENSMUSG00000086472 ENSMUST00000156224 Gm16172 antisense Interval_161406 chr8 120287504 120289620 + 0 NA intron (ENSMUSG00000031822.20, intron 1 of 2) protein_coding-intron (ENSMUSG00000092329.1, intron 1 of 15) -60332 ENSMUSG00000097960.1 ENSMUSG00000097960 ENSMUST00000183235 A330074K22Rik lincRNA Interval_149875 chr7 102151582 102151778 + 0 NA TTS (ENSMUSG00000063550.8) protein_coding-TTS (ENSMUSG00000063550.8) 31885 ENSMUSG00000063550.8 ENSMUSG00000063550 ENSMUST00000211375 Nup98 protein_coding Interval_115335 chr4 96788823 96789971 + 0 NA Intergenic Intergenic -4211 ENSMUSG00000078639.1 ENSMUSG00000078639 ENSMUST00000107071 Gm12695 protein_coding Interval_150285 chr7 109290638 109291181 + 0 NA intron (ENSMUSG00000031027.15, intron 2 of 2) protein_coding-intron (ENSMUSG00000031027.15, intron 12 of 12) -66709 ENSMUSG00000109001.1 ENSMUSG00000109001 ENSMUST00000208274 Gm45024 lincRNA Interval_78183 chr18 9885523 9886097 + 0 NA Intergenic Intergenic -23383 ENSMUSG00000117453.1 ENSMUSG00000117453 ENSMUST00000234777 Gm2424 processed_pseudogene Interval_112946 chr4 46339412 46339819 + 0 NA intron (ENSMUSG00000087383.7, intron 1 of 2) antisense-intron (ENSMUSG00000087383.7, intron 1 of 4) -3994 ENSMUSG00000070990.2 ENSMUSG00000070990 ENSMUST00000095097 Foxe1 protein_coding Interval_66475 chr16 34087187 34088578 + 0 NA intron (ENSMUSG00000061751.16, intron 33 of 48) protein_coding-intron (ENSMUSG00000061751.16, intron 34 of 59) 8146 ENSMUSG00000061751.16 ENSMUSG00000061751 ENSMUST00000132569 Kalrn protein_coding Interval_127629 chr5 105930104 105930732 + 0 NA Intergenic Intergenic 50764 ENSMUSG00000105129.1 ENSMUSG00000105129 ENSMUST00000199576 Gm19566 processed_pseudogene Interval_173869 chrX 106219045 106220671 + 0 NA promoter-TSS (ENSMUSG00000047242.14) protein_coding-promoter-TSS (ENSMUSG00000047242.14) 892 ENSMUSG00000047242.14 ENSMUSG00000047242 ENSMUST00000134547 Taf9b protein_coding Interval_38945 chr12 84015846 84016172 + 0 NA intron (ENSMUSG00000072949.6, intron 1 of 1) protein_coding-intron (ENSMUSG00000072949.6, intron 2 of 2) 5874 ENSMUSG00000072949.6 ENSMUSG00000072949 ENSMUST00000220901 Acot1 protein_coding Interval_105250 chr3 84206292 84207170 + 0 NA exon (ENSMUSG00000027993.16, exon 3 of 3) protein_coding-exon (ENSMUSG00000027993.16, exon 3 of 3) 32627 ENSMUSG00000104043.1 ENSMUSG00000104043 ENSMUST00000193882 Gm6525 protein_coding Interval_17790 chr10 80096948 80097845 + 0 NA intron (ENSMUSG00000035673.10, intron 1 of 11) protein_coding-intron (ENSMUSG00000035673.10, intron 1 of 31) 6974 ENSMUSG00000035673.10 ENSMUSG00000035673 ENSMUST00000217683 Sbno2 protein_coding Interval_75254 chr17 65437291 65438436 + 0 NA TTS (ENSMUSG00000117300.1) processed_pseudogene-TTS (ENSMUSG00000117300.1) 834 ENSMUSG00000117300.1 ENSMUSG00000117300 ENSMUST00000233888 Gm18736 processed_pseudogene Interval_48838 chr13 103919671 103921924 + 0 NA promoter-TSS (ENSMUSG00000021709.14) protein_coding-promoter-TSS (ENSMUSG00000021709.14) -502 ENSMUSG00000021709.14 ENSMUSG00000021709 ENSMUST00000189323 Erbin protein_coding Interval_139849 chr6 111118416 111118658 + 0 NA intron (ENSMUSG00000056755.13, intron 5 of 9) protein_coding-intron (ENSMUSG00000056755.13, intron 4 of 10) -377207 ENSMUSG00000056755.13 ENSMUSG00000056755 ENSMUST00000174310 Grm7 protein_coding Interval_143546 chr7 12485743 12486410 + 0 NA intron (ENSMUSG00000030386.19, intron 5 of 7) protein_coding-intron (ENSMUSG00000030386.19, intron 4 of 6) 7713 ENSMUSG00000030386.19 ENSMUSG00000030386 ENSMUST00000133515 Zfp606 protein_coding Interval_23489 chr11 22912075 22912398 + 0 NA intron (ENSMUSG00000051355.18, intron 1 of 1) protein_coding-intron (ENSMUSG00000051355.18, intron 3 of 3) 43335 ENSMUSG00000065869.1 ENSMUSG00000065869 ENSMUST00000083935 Gm24917 snRNA Interval_81090 chr18 53763168 53763419 + 0 NA Intergenic Intergenic -18730 ENSMUSG00000048799.8 ENSMUSG00000048799 ENSMUST00000235928 Cep120 protein_coding Interval_13996 chr10 25372283 25373243 + 0 NA intron (ENSMUSG00000019978.16, intron 1 of 17) protein_coding-intron (ENSMUSG00000019978.16, intron 1 of 19) 43422 ENSMUSG00000112445.1 ENSMUSG00000112445 ENSMUST00000219193 Gm47830 processed_pseudogene Interval_59165 chr15 45700775 45701936 + 0 NA Intergenic Intergenic -261171 ENSMUSG00000115549.1 ENSMUSG00000115549 ENSMUST00000228018 Gm2203 processed_pseudogene Interval_126317 chr5 86568930 86569423 + 0 NA intron (ENSMUSG00000048764.16, intron 2 of 2) protein_coding-intron (ENSMUSG00000048764.16, intron 2 of 10) 63207 ENSMUSG00000048764.16 ENSMUSG00000048764 ENSMUST00000173259 Tmprss11f protein_coding Interval_98448 chr2 152427436 152429005 + 0 NA intron (ENSMUSG00000032680.11, intron 2 of 10) protein_coding-intron (ENSMUSG00000032680.11, intron 3 of 11) 585 ENSMUSG00000032680.11 ENSMUSG00000032680 ENSMUST00000128737 6820408C15Rik protein_coding Interval_110243 chr3 154763191 154764857 + 0 NA promoter-TSS (ENSMUSG00000078161.8) protein_coding-promoter-TSS (ENSMUSG00000078161.8) 52159 ENSMUSG00000078161.8 ENSMUSG00000078161 ENSMUST00000189969 Erich3 protein_coding Interval_78605 chr18 15109191 15110234 + 0 NA intron (ENSMUSG00000036225.15, intron 1 of 4) protein_coding-intron (ENSMUSG00000036225.15, intron 1 of 4) -45614 ENSMUSG00000036225.15 ENSMUSG00000036225 ENSMUST00000234685 Kctd1 protein_coding Interval_99171 chr2 157745500 157747633 + 0 NA intron (ENSMUSG00000027649.15, intron 1 of 15) protein_coding-intron (ENSMUSG00000027649.15, intron 1 of 15) 20566 ENSMUSG00000084417.1 ENSMUSG00000084417 ENSMUST00000122468 Gm23463 snRNA Interval_20813 chr10 121243756 121244225 + 0 NA TTS (ENSMUSG00000112871.1) lincRNA-TTS (ENSMUSG00000112871.1) 988 ENSMUSG00000112871.1 ENSMUSG00000112871 ENSMUST00000219186 Gm35404 lincRNA Interval_156654 chr8 56519828 56520473 + 0 NA Intergenic Intergenic 1353 ENSMUSG00000077585.1 ENSMUSG00000077585 ENSMUST00000104397 Gm24375 snoRNA Interval_87031 chr19 45695495 45695913 + 0 NA Intergenic Intergenic 47211 ENSMUSG00000025219.13 ENSMUSG00000025219 ENSMUST00000111925 Fgf8 protein_coding Interval_121980 chr5 12928941 12929171 + 0 NA Intergenic Intergenic -11314 ENSMUSG00000094310.1 ENSMUSG00000094310 ENSMUST00000180047 Gm23243 miRNA Interval_144152 chr7 19679656 19680001 + 0 NA exon (ENSMUSG00000074336.5, exon 1 of 1) protein_coding-exon (ENSMUSG00000074336.5, exon 1 of 1) 1573 ENSMUSG00000074336.5 ENSMUSG00000074336 ENSMUST00000209130 Apoc4 protein_coding Interval_136922 chr6 64590663 64592114 + 0 NA intron (ENSMUSG00000071424.10, intron 14 of 15) protein_coding-intron (ENSMUSG00000071424.10, intron 14 of 15) -71800 ENSMUSG00000071424.10 ENSMUSG00000071424 ENSMUST00000210324 Grid2 protein_coding Interval_46716 chr13 69585723 69585998 + 0 NA intron (ENSMUSG00000021594.11, intron 2 of 2) protein_coding-intron (ENSMUSG00000021594.11, intron 4 of 4) 8969 ENSMUSG00000021594.11 ENSMUSG00000021594 ENSMUST00000059235 Srd5a1 protein_coding Interval_170903 chr9 111856851 111857101 + 0 NA Intergenic Intergenic 61690 ENSMUSG00000111054.1 ENSMUSG00000111054 ENSMUST00000215688 4930545L08Rik lincRNA Interval_173730 chrX 103227425 103228243 + 0 NA exon (ENSMUSG00000083763.1, exon 1 of 1) processed_pseudogene-exon (ENSMUSG00000083763.1, exon 1 of 1) 129 ENSMUSG00000083763.1 ENSMUSG00000083763 ENSMUST00000119501 Gm9050 processed_pseudogene Interval_30470 chr11 94579912 94581364 + 0 NA intron (ENSMUSG00000076435.3, intron 1 of 6) protein_coding-intron (ENSMUSG00000076435.3, intron 1 of 15) 15591 ENSMUSG00000039084.8 ENSMUSG00000039084 ENSMUST00000040418 Chad protein_coding Interval_148480 chr7 81614823 81615676 + 0 NA intron (ENSMUSG00000025813.14, intron 5 of 6) protein_coding-intron (ENSMUSG00000025813.14, intron 5 of 8) 5140 ENSMUSG00000109194.1 ENSMUSG00000109194 ENSMUST00000207526 Gm44570 antisense Interval_35801 chr12 30050123 30050684 + 0 NA Intergenic Intergenic -9254 ENSMUSG00000085472.1 ENSMUSG00000085472 ENSMUST00000138626 Gm15691 antisense Interval_164548 chr9 38426839 38427217 + 0 NA Intergenic Intergenic -2431 ENSMUSG00000052058.3 ENSMUSG00000052058 ENSMUST00000063716 Olfr901 protein_coding Interval_57345 chr15 9348521 9349288 + 0 NA intron (ENSMUSG00000049152.11, intron 2 of 3) protein_coding-intron (ENSMUSG00000049152.11, intron 2 of 6) 13315 ENSMUSG00000049152.11 ENSMUSG00000049152 ENSMUST00000144755 Ugt3a2 protein_coding Interval_80790 chr18 47084395 47084785 + 0 NA intron (ENSMUSG00000042705.9, intron 5 of 6) protein_coding-intron (ENSMUSG00000042705.9, intron 5 of 6) -27549 ENSMUSG00000117621.1 ENSMUSG00000117621 ENSMUST00000234633 Hspe1-rs1 protein_coding Interval_80345 chr18 39668761 39669766 + 0 NA intron (ENSMUSG00000117922.1, intron 2 of 2) lincRNA-intron (ENSMUSG00000117922.1, intron 2 of 2) 8386 ENSMUSG00000117983.1 ENSMUSG00000117983 ENSMUST00000236724 Gm50398 TEC Interval_15727 chr10 54802044 54802249 + 0 NA Intergenic Intergenic -89109 ENSMUSG00000088987.1 ENSMUSG00000088987 ENSMUST00000158362 Gm25602 snRNA Interval_138733 chr6 91515250 91516527 + 0 NA promoter-TSS (ENSMUSG00000030094.8) protein_coding-promoter-TSS (ENSMUSG00000030094.8) -4 ENSMUSG00000030094.8 ENSMUSG00000030094 ENSMUST00000206476 Xpc protein_coding Interval_37787 chr12 71983074 71984254 + 0 NA intron (ENSMUSG00000034574.10, intron 23 of 25) protein_coding-intron (ENSMUSG00000034574.10, intron 23 of 25) 65595 ENSMUSG00000114155.1 ENSMUSG00000114155 ENSMUST00000221336 Gm7986 processed_pseudogene Interval_4532 chr1 74824554 74825685 + 0 NA Intergenic Intergenic -25776 ENSMUSG00000089964.1 ENSMUSG00000089964 ENSMUST00000159627 Gm16582 processed_transcript Interval_154738 chr8 22967642 22968068 + 0 NA Intergenic Intergenic -9414 ENSMUSG00000109793.1 ENSMUSG00000109793 ENSMUST00000210691 Gm10043 processed_pseudogene Interval_169430 chr9 97185011 97185221 + 0 NA Intergenic Intergenic 5937 ENSMUSG00000101502.1 ENSMUSG00000101502 ENSMUST00000190579 Rpl7a-ps10 processed_pseudogene Interval_143064 chr6 149004247 149004652 + 0 NA TTS (ENSMUSG00000082633.1) processed_pseudogene-TTS (ENSMUSG00000082633.1) 534 ENSMUSG00000082633.1 ENSMUSG00000082633 ENSMUST00000117470 Gm15779 processed_pseudogene Interval_6269 chr1 105026847 105027675 + 0 NA Intergenic Intergenic -89193 ENSMUSG00000099669.1 ENSMUSG00000099669 ENSMUST00000187882 Gm29012 lincRNA Interval_22159 chr11 6698199 6699073 + 0 NA Intergenic Intergenic 12812 ENSMUSG00000083075.1 ENSMUSG00000083075 ENSMUST00000121445 Gm11980 processed_pseudogene Interval_150584 chr7 112633049 112633608 + 0 NA intron (ENSMUSG00000085945.3, intron 2 of 3) bidirectional_promoter_lncRNA-intron (ENSMUSG00000085945.3, intron 2 of 3) -15103 ENSMUSG00000093002.1 ENSMUSG00000093002 ENSMUST00000175261 Gm24154 snoRNA Interval_159092 chr8 90295341 90295537 + 0 NA intron (ENSMUSG00000043668.13, intron 1 of 5) protein_coding-intron (ENSMUSG00000043668.13, intron 1 of 6) 52692 ENSMUSG00000043668.13 ENSMUSG00000043668 ENSMUST00000176034 Tox3 protein_coding Interval_67145 chr16 43889271 43890241 + 0 NA promoter-TSS (ENSMUSG00000022704.16) protein_coding-promoter-TSS (ENSMUSG00000022704.16) -44 ENSMUSG00000022701.18 ENSMUSG00000022701 ENSMUST00000122440 Ccdc191 protein_coding Interval_116519 chr4 114986383 114987683 + 0 NA promoter-TSS (ENSMUSG00000065047.1) misc_RNA-promoter-TSS (ENSMUSG00000065047.1) 116 ENSMUSG00000028719.8 ENSMUSG00000028719 ENSMUST00000131014 Cmpk1 protein_coding Interval_108083 chr3 121426093 121429100 + 0 NA promoter-TSS (ENSMUSG00000105813.1) TEC-promoter-TSS (ENSMUSG00000105813.1) -22 ENSMUSG00000105813.1 ENSMUSG00000105813 ENSMUST00000197338 Gm42928 TEC Interval_94258 chr2 87019040 87020192 + 0 NA Intergenic Intergenic 7464 ENSMUSG00000075166.2 ENSMUSG00000075166 ENSMUST00000099869 Olfr1104 protein_coding Interval_126713 chr5 92218652 92220523 + 0 NA Intergenic Intergenic -7237 ENSMUSG00000029409.7 ENSMUSG00000029409 ENSMUST00000202847 U90926 processed_transcript Interval_14129 chr10 27940062 27940293 + 0 NA Intergenic Intergenic 3813 ENSMUSG00000064208.6 ENSMUSG00000064208 ENSMUST00000077776 Gm10145 processed_pseudogene Interval_45713 chr13 57230074 57230486 + 0 NA Intergenic Intergenic -9567 ENSMUSG00000114363.1 ENSMUSG00000114363 ENSMUST00000225562 Gm48174 processed_pseudogene Interval_100237 chr2 167835034 167835619 + 0 NA Intergenic Intergenic -1680 ENSMUSG00000087684.1 ENSMUSG00000087684 ENSMUST00000143649 1200007C13Rik lincRNA Interval_108069 chr3 121337005 121337358 + 0 NA promoter-TSS (ENSMUSG00000084674.1) misc_RNA-promoter-TSS (ENSMUSG00000084674.1) -511 ENSMUSG00000084674.1 ENSMUSG00000084674 ENSMUST00000122725 Gm26027 misc_RNA Interval_146130 chr7 44235963 44236450 + 0 NA promoter-TSS (ENSMUSG00000038782.7) protein_coding-promoter-TSS (ENSMUSG00000038782.7) 29 ENSMUSG00000108622.2 ENSMUSG00000108622 ENSMUST00000205530 Gm36864 protein_coding Interval_17076 chr10 71207283 71207584 + 0 NA Intergenic Intergenic -25381 ENSMUSG00000112189.1 ENSMUSG00000112189 ENSMUST00000219181 C730027H18Rik lincRNA Interval_118956 chr4 134687867 134688270 + 0 NA intron (ENSMUSG00000037306.13, intron 1 of 8) protein_coding-intron (ENSMUSG00000037306.13, intron 2 of 12) 15699 ENSMUSG00000037306.13 ENSMUSG00000037306 ENSMUST00000176606 Man1c1 protein_coding Interval_75684 chr17 70646554 70646856 + 0 NA intron (ENSMUSG00000003279.17, intron 2 of 9) protein_coding-intron (ENSMUSG00000003279.17, intron 7 of 14) 108877 ENSMUSG00000097282.1 ENSMUSG00000097282 ENSMUST00000181546 5031415H12Rik antisense Interval_114731 chr4 84531335 84531708 + 0 NA intron (ENSMUSG00000028487.18, intron 1 of 3) protein_coding-intron (ENSMUSG00000028487.18, intron 3 of 7) -102397 ENSMUSG00000083743.1 ENSMUSG00000083743 ENSMUST00000119071 Gm12421 processed_pseudogene Interval_20110 chr10 114878705 114879083 + 0 NA intron (ENSMUSG00000111883.1, intron 2 of 5) lincRNA-intron (ENSMUSG00000111883.1, intron 2 of 5) 3887 ENSMUSG00000111883.1 ENSMUSG00000111883 ENSMUST00000219061 Gm31182 lincRNA Interval_42193 chr13 9736580 9736998 + 0 NA promoter-TSS (ENSMUSG00000021156.17) protein_coding-promoter-TSS (ENSMUSG00000021156.17) 2892 ENSMUSG00000113885.1 ENSMUSG00000113885 ENSMUST00000221766 Gm47802 antisense Interval_140771 chr6 121183562 121185347 + 0 NA exon (ENSMUSG00000067825.11, exon 1 of 5) protein_coding-exon (ENSMUSG00000067825.11, exon 1 of 5) 556 ENSMUSG00000067825.11 ENSMUSG00000067825 ENSMUST00000125633 Pex26 protein_coding Interval_85525 chr19 28022852 28023074 + 0 NA Intergenic Intergenic -10501 ENSMUSG00000117788.1 ENSMUSG00000117788 ENSMUST00000236375 Gm5517 processed_pseudogene Interval_32179 chr11 105955730 105956571 + 0 NA Intergenic Intergenic -11721 ENSMUSG00000019590.16 ENSMUSG00000019590 ENSMUST00000150563 Cyb561 protein_coding Interval_165167 chr9 44950858 44951512 + 0 NA TTS (ENSMUSG00000059890.16) protein_coding-TTS (ENSMUSG00000059890.16) -4530 ENSMUSG00000111241.1 ENSMUSG00000111241 ENSMUST00000215720 Gm19121 unprocessed_pseudogene Interval_123527 chr5 33228246 33228590 + 0 NA Intergenic Intergenic -10223 ENSMUSG00000037379.7 ENSMUSG00000037379 ENSMUST00000201475 Spon2 protein_coding Interval_11198 chr1 180070462 180070887 + 0 NA intron (ENSMUSG00000026490.18, intron 9 of 37) protein_coding-intron (ENSMUSG00000026490.18, intron 9 of 34) 49612 ENSMUSG00000102194.1 ENSMUSG00000102194 ENSMUST00000191822 Gm38169 TEC Interval_122370 chr5 21749264 21749447 + 0 NA promoter-TSS (ENSMUSG00000083006.1) processed_pseudogene-promoter-TSS (ENSMUSG00000083006.1) -842 ENSMUSG00000083006.1 ENSMUSG00000083006 ENSMUST00000118032 Gm15715 processed_pseudogene Interval_19415 chr10 99066202 99066738 + 0 NA Intergenic Intergenic 26998 ENSMUSG00000112660.1 ENSMUSG00000112660 ENSMUST00000219298 Gm48761 TEC Interval_157007 chr8 64348990 64349204 + 0 NA Intergenic Intergenic 68003 ENSMUSG00000109579.1 ENSMUSG00000109579 ENSMUST00000211285 Gm35521 lincRNA Interval_94237 chr2 86080293 86080549 + 0 NA Intergenic Intergenic 6429 ENSMUSG00000099820.2 ENSMUSG00000099820 ENSMUST00000164985 Olfr1036 protein_coding Interval_46247 chr13 62929476 62930366 + 0 NA Intergenic Intergenic 19521 ENSMUSG00000113057.1 ENSMUSG00000113057 ENSMUST00000221723 Gm48812 lincRNA Interval_105203 chr3 83797680 83798471 + 0 NA Intergenic Intergenic -1893 ENSMUSG00000104082.2 ENSMUSG00000104082 ENSMUST00000193706 Gm7115 unprocessed_pseudogene Interval_65010 chr16 17833150 17834627 + 0 NA exon (ENSMUSG00000116652.2, exon 1 of 2) protein_coding-exon (ENSMUSG00000116652.2, exon 1 of 2) 320 ENSMUSG00000116652.2 ENSMUSG00000116652 ENSMUST00000235474 B830017H08Rik protein_coding Interval_62470 chr15 93251901 93252643 + 0 NA intron (ENSMUSG00000036197.16, intron 4 of 6) protein_coding-intron (ENSMUSG00000036197.16, intron 4 of 7) 17909 ENSMUSG00000065911.1 ENSMUSG00000065911 ENSMUST00000083977 Gm24447 misc_RNA Interval_2168 chr1 36824746 36825097 + 0 NA promoter-TSS (ENSMUSG00000026116.11) protein_coding-promoter-TSS (ENSMUSG00000026116.11) 45937 ENSMUSG00000026117.10 ENSMUSG00000026117 ENSMUST00000190128 Zap70 protein_coding Interval_45897 chr13 58940676 58941722 + 0 NA intron (ENSMUSG00000055254.15, intron 12 of 17) protein_coding-intron (ENSMUSG00000055254.15, intron 12 of 17) 105384 ENSMUSG00000055254.15 ENSMUSG00000055254 ENSMUST00000223636 Ntrk2 protein_coding Interval_78378 chr18 12305238 12306241 + 0 NA promoter-TSS (ENSMUSG00000057766.14) protein_coding-promoter-TSS (ENSMUSG00000057766.14) 18335 ENSMUSG00000082051.1 ENSMUSG00000082051 ENSMUST00000119574 Gm16072 processed_pseudogene Interval_109174 chr3 137622162 137624481 + 0 NA promoter-TSS (ENSMUSG00000046818.7) protein_coding-promoter-TSS (ENSMUSG00000046818.7) 1709 ENSMUSG00000046818.7 ENSMUSG00000046818 ENSMUST00000165845 Ddit4l protein_coding Interval_145017 chr7 29452458 29455790 + 0 NA intron (ENSMUSG00000030583.16, intron 1 of 2) protein_coding-intron (ENSMUSG00000030583.16, intron 2 of 22) -70419 ENSMUSG00000074224.3 ENSMUSG00000074224 ENSMUST00000098602 4932431P20Rik transcribed_unitary_pseudogene Interval_41498 chr12 115258507 115259077 + 0 NA promoter-TSS (ENSMUSG00000102381.1) IG_V_pseudogene-promoter-TSS (ENSMUSG00000102381.1) -360 ENSMUSG00000102381.1 ENSMUSG00000102381 ENSMUST00000194349 Ighv8-7 IG_V_pseudogene Interval_17124 chr10 71477908 71478988 + 0 NA intron (ENSMUSG00000112108.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000112108.1, intron 1 of 1) -4633 ENSMUSG00000112608.1 ENSMUSG00000112608 ENSMUST00000217831 Gm46233 processed_pseudogene Interval_154107 chr8 12756426 12757860 + 0 NA promoter-TSS (ENSMUSG00000031441.15) protein_coding-promoter-TSS (ENSMUSG00000031441.15) -38016 ENSMUSG00000074469.6 ENSMUSG00000074469 ENSMUST00000151188 Gm15348 lincRNA Interval_155323 chr8 31241024 31241391 + 0 NA intron (ENSMUSG00000046152.16, intron 5 of 5) protein_coding-intron (ENSMUSG00000046152.16, intron 4 of 4) -25856 ENSMUSG00000083588.1 ENSMUSG00000083588 ENSMUST00000120464 Gm8051 processed_pseudogene Interval_163877 chr9 27397547 27397739 + 0 NA exon (ENSMUSG00000031991.10, exon 1 of 5) protein_coding-exon (ENSMUSG00000031991.10, exon 1 of 5) 433 ENSMUSG00000031991.10 ENSMUSG00000031991 ENSMUST00000215326 Spata19 protein_coding Interval_37437 chr12 68769219 68769466 + 0 NA Intergenic Intergenic 42955 ENSMUSG00000112933.1 ENSMUSG00000112933 ENSMUST00000223294 Gm47491 processed_pseudogene Interval_82494 chr18 74566570 74567138 + 0 NA intron (ENSMUSG00000025885.18, intron 1 of 39) protein_coding-intron (ENSMUSG00000025885.18, intron 1 of 38) -35730 ENSMUSG00000086333.1 ENSMUSG00000086333 ENSMUST00000137034 1700120E14Rik antisense Interval_166337 chr9 58432782 58432965 + 0 NA Intergenic Intergenic -22249 ENSMUSG00000097651.2 ENSMUSG00000097651 ENSMUST00000181967 4930461G14Rik lincRNA Interval_33619 chr11 117553961 117555716 + 0 NA Intergenic Intergenic 31235 ENSMUSG00000085419.1 ENSMUSG00000085419 ENSMUST00000132261 Gm11734 lincRNA Interval_137454 chr6 72548915 72549714 + 0 NA promoter-TSS (ENSMUSG00000056737.14) protein_coding-promoter-TSS (ENSMUSG00000056737.14) -144 ENSMUSG00000056737.14 ENSMUSG00000056737 ENSMUST00000127770 Capg protein_coding Interval_168033 chr9 75495371 75497291 + 0 NA Intergenic Intergenic 13480 ENSMUSG00000109032.1 ENSMUSG00000109032 ENSMUST00000209180 Gm7972 transcribed_unprocessed_pseudogene Interval_122845 chr5 26032327 26032985 + 0 NA TTS (ENSMUSG00000073119.3) protein_coding-TTS (ENSMUSG00000073119.3) 6902 ENSMUSG00000073119.3 ENSMUSG00000073119 ENSMUST00000079447 Speer4a protein_coding Interval_17438 chr10 76728238 76728624 + 0 NA exon (ENSMUSG00000112291.1, exon 2 of 2) lincRNA-exon (ENSMUSG00000112291.1, exon 2 of 2) 1842 ENSMUSG00000112291.1 ENSMUSG00000112291 ENSMUST00000218963 Gm48276 lincRNA Interval_8523 chr1 140576583 140576860 + 0 NA intron (ENSMUSG00000052726.16, intron 25 of 27) protein_coding-intron (ENSMUSG00000052726.16, intron 23 of 26) 79683 ENSMUSG00000102368.1 ENSMUSG00000102368 ENSMUST00000193820 4930590L20Rik antisense Interval_117190 chr4 120387611 120389790 + 0 NA Intergenic Intergenic -16681 ENSMUSG00000000085.16 ENSMUSG00000000085 ENSMUST00000133169 Scmh1 protein_coding Interval_59854 chr15 59812086 59812348 + 0 NA Intergenic Intergenic -17258 ENSMUSG00000115426.1 ENSMUSG00000115426 ENSMUST00000228865 Gm19510 lincRNA Interval_31071 chr11 97985872 97986646 + 0 NA exon (ENSMUSG00000017417.14, exon 1 of 14) protein_coding-exon (ENSMUSG00000017417.14, exon 1 of 14) 174 ENSMUSG00000017417.14 ENSMUSG00000017417 ENSMUST00000107564 Plxdc1 protein_coding Interval_124634 chr5 52618364 52619060 + 0 NA intron (ENSMUSG00000052295.4, intron 1 of 2) lincRNA-intron (ENSMUSG00000052295.4, intron 1 of 2) 300 ENSMUSG00000052295.4 ENSMUSG00000052295 ENSMUST00000064097 8030423F21Rik lincRNA Interval_160516 chr8 110217377 110218266 + 0 NA promoter-TSS (ENSMUSG00000046441.5) protein_coding-promoter-TSS (ENSMUSG00000046441.5) 2156 ENSMUSG00000046441.5 ENSMUSG00000046441 ENSMUST00000056972 Cmtr2 protein_coding Interval_92435 chr2 59707020 59708033 + 0 NA intron (ENSMUSG00000035168.16, intron 1 of 1) protein_coding-intron (ENSMUSG00000035168.16, intron 3 of 26) -98542 ENSMUSG00000035168.16 ENSMUSG00000035168 ENSMUST00000147650 Tanc1 protein_coding Interval_73615 chr17 41207156 41209281 + 0 NA Intergenic Intergenic 107180 ENSMUSG00000117062.1 ENSMUSG00000117062 ENSMUST00000232966 Ldha-ps3 processed_pseudogene Interval_159351 chr8 93984030 93984278 + 0 NA intron (ENSMUSG00000031751.14, intron 8 of 13) protein_coding-intron (ENSMUSG00000031751.14, intron 8 of 13) 18358 ENSMUSG00000031748.16 ENSMUSG00000031748 ENSMUST00000212008 Gnao1 protein_coding Interval_26262 chr11 55497759 55498248 + 0 NA exon (ENSMUSG00000018583.5, exon 10 of 12) protein_coding-exon (ENSMUSG00000018583.5, exon 10 of 12) -3223 ENSMUSG00000098906.1 ENSMUSG00000098906 ENSMUST00000185156 Mir7652 miRNA Interval_9884 chr1 163796620 163796853 + 0 NA intron (ENSMUSG00000026585.13, intron 4 of 20) protein_coding-intron (ENSMUSG00000026585.13, intron 4 of 19) 17153 ENSMUSG00000026585.13 ENSMUSG00000026585 ENSMUST00000027877 Kifap3 protein_coding Interval_74221 chr17 47531168 47532509 + 0 NA intron (ENSMUSG00000034165.16, intron 1 of 6) protein_coding-intron (ENSMUSG00000034165.16, intron 1 of 6) -29566 ENSMUSG00000023980.7 ENSMUSG00000023980 ENSMUST00000233675 Taf8 protein_coding Interval_38404 chr12 78764311 78764635 + 0 NA intron (ENSMUSG00000021112.9, intron 1 of 14) protein_coding-intron (ENSMUSG00000021112.9, intron 1 of 14) -11685 ENSMUSG00000088822.1 ENSMUSG00000088822 ENSMUST00000158197 Gm25225 snRNA Interval_20129 chr10 115164768 115165425 + 0 NA intron (ENSMUSG00000006764.8, intron 5 of 10) protein_coding-intron (ENSMUSG00000006764.8, intron 5 of 10) 10462 ENSMUSG00000006764.8 ENSMUSG00000006764 ENSMUST00000155794 Tph2 protein_coding Interval_121095 chr4 152951104 152951362 + 0 NA Intergenic Intergenic 62351 ENSMUSG00000080360.1 ENSMUSG00000080360 ENSMUST00000116710 Gm25779 miRNA Interval_44981 chr13 51130918 51131909 + 0 NA intron (ENSMUSG00000021395.11, intron 3 of 5) protein_coding-intron (ENSMUSG00000021395.11, intron 3 of 5) -2906 ENSMUSG00000021395.11 ENSMUSG00000021395 ENSMUST00000223152 Spin1 protein_coding Interval_83755 chr19 4408902 4409627 + 0 NA Intergenic Intergenic -30059 ENSMUSG00000087132.8 ENSMUSG00000087132 ENSMUST00000136632 A930001C03Rik processed_transcript Interval_115332 chr4 96736538 96737281 + 0 NA intron (ENSMUSG00000078639.1, intron 8 of 10) protein_coding-intron (ENSMUSG00000078639.1, intron 8 of 10) 48277 ENSMUSG00000078639.1 ENSMUSG00000078639 ENSMUST00000107071 Gm12695 protein_coding Interval_73155 chr17 35141795 35142498 + 0 NA TTS (ENSMUSG00000024392.17) protein_coding-TTS (ENSMUSG00000024392.17) 987 ENSMUSG00000024392.17 ENSMUSG00000024392 ENSMUST00000172882 Bag6 protein_coding Interval_54621 chr14 72301965 72302246 + 0 NA Intergenic Intergenic -106409 ENSMUSG00000115061.1 ENSMUSG00000115061 ENSMUST00000228357 Gm49290 processed_pseudogene Interval_53948 chr14 63652960 63653538 + 0 NA intron (ENSMUSG00000035067.9, intron 1 of 2) protein_coding-intron (ENSMUSG00000035067.9, intron 1 of 2) -45877 ENSMUSG00000087652.1 ENSMUSG00000087652 ENSMUST00000137259 Gm15918 antisense Interval_38401 chr12 78735265 78735698 + 0 NA TTS (ENSMUSG00000056987.8) protein_coding-TTS (ENSMUSG00000056987.8) -13445 ENSMUSG00000021112.9 ENSMUSG00000021112 ENSMUST00000219180 Mpp5 protein_coding Interval_84792 chr19 16773405 16773987 + 0 NA intron (ENSMUSG00000046230.11, intron 1 of 5) protein_coding-intron (ENSMUSG00000046230.11, intron 1 of 71) -6851 ENSMUSG00000046388.4 ENSMUSG00000046388 ENSMUST00000051080 Gm9806 pseudogene Interval_115738 chr4 103168990 103169251 + 0 NA Intergenic Intergenic 45683 ENSMUSG00000028521.17 ENSMUSG00000028521 ENSMUST00000154845 Slc35d1 protein_coding Interval_52121 chr14 36873633 36874258 + 0 NA TTS (ENSMUSG00000058690.14) protein_coding-TTS (ENSMUSG00000058690.14) -17901 ENSMUSG00000065894.1 ENSMUSG00000065894 ENSMUST00000083960 n-R5s46 rRNA Interval_155267 chr8 29290593 29290810 + 0 NA Intergenic Intergenic -3720 ENSMUSG00000110331.1 ENSMUSG00000110331 ENSMUST00000209275 Nudc-ps1 processed_pseudogene Interval_96269 chr2 121102101 121102622 + 0 NA intron (ENSMUSG00000079103.3, intron 5 of 11) protein_coding-intron (ENSMUSG00000079103.3, intron 6 of 12) 7431 ENSMUSG00000079103.3 ENSMUSG00000079103 ENSMUST00000238428 Tgm7 protein_coding Interval_67018 chr16 40621081 40621648 + 0 NA intron (ENSMUSG00000061080.11, intron 2 of 2) protein_coding-intron (ENSMUSG00000061080.11, intron 1 of 8) -253427 ENSMUSG00000098472.1 ENSMUSG00000098472 ENSMUST00000184367 Gm27887 miRNA Interval_10891 chr1 176681680 176682670 + 0 NA Intergenic Intergenic -18442 ENSMUSG00000087875.1 ENSMUSG00000087875 ENSMUST00000157250 Gm26104 snRNA Interval_22981 chr11 18366051 18366470 + 0 NA Intergenic Intergenic -38589 ENSMUSG00000081302.1 ENSMUSG00000081302 ENSMUST00000119030 Gm12020 processed_pseudogene Interval_23242 chr11 20830285 20831698 + 0 NA promoter-TSS (ENSMUSG00000042363.14) protein_coding-promoter-TSS (ENSMUSG00000042363.14) 65 ENSMUSG00000042363.14 ENSMUSG00000042363 ENSMUST00000132928 Lgalsl protein_coding Interval_68742 chr16 85393427 85393975 + 0 NA Intergenic Intergenic 156716 ENSMUSG00000041134.15 ENSMUSG00000041134 ENSMUST00000162621 Cyyr1 protein_coding Interval_83645 chr19 3436561 3437398 + 0 NA Intergenic Intergenic -22435 ENSMUSG00000024907.7 ENSMUSG00000024907 ENSMUST00000025842 Gal protein_coding Interval_25818 chr11 51906396 51906679 + 0 NA intron (ENSMUSG00000110618.1, intron 2 of 2) lincRNA-intron (ENSMUSG00000110618.1, intron 2 of 2) 7571 ENSMUSG00000110618.1 ENSMUSG00000110618 ENSMUST00000212253 Gm39822 lincRNA Interval_120668 chr4 149998791 150000415 + 0 NA TTS (ENSMUSG00000028980.14) protein_coding-TTS (ENSMUSG00000028980.14) 1662 ENSMUSG00000028980.14 ENSMUSG00000028980 ENSMUST00000152907 H6pd protein_coding Interval_44092 chr13 40843305 40843910 + 0 NA Intergenic Intergenic -3132 ENSMUSG00000114560.1 ENSMUSG00000114560 ENSMUST00000223759 Gm35160 unprocessed_pseudogene Interval_172352 chrX 13346334 13348207 + 0 NA Intergenic Intergenic -20251 ENSMUSG00000080914.1 ENSMUSG00000080914 ENSMUST00000117402 Gm7129 processed_pseudogene Interval_142009 chr6 136524581 136525635 + 0 NA TTS (ENSMUSG00000030213.12) protein_coding-TTS (ENSMUSG00000030213.12) -6077 ENSMUSG00000107702.1 ENSMUSG00000107702 ENSMUST00000204157 Gm44140 bidirectional_promoter_lncRNA Interval_3011 chr1 52150005 52150847 + 0 NA exon (ENSMUSG00000026104.14, exon 1 of 3) protein_coding-exon (ENSMUSG00000026104.14, exon 1 of 3) -15096 ENSMUSG00000099569.1 ENSMUSG00000099569 ENSMUST00000185261 Gm18301 unprocessed_pseudogene Interval_38363 chr12 77795242 77796066 + 0 NA Intergenic Intergenic 19155 ENSMUSG00000077707.1 ENSMUSG00000077707 ENSMUST00000104519 Gm24070 snoRNA Interval_120932 chr4 151738117 151738436 + 0 NA intron (ENSMUSG00000014592.21, intron 2 of 7) protein_coding-intron (ENSMUSG00000014592.21, intron 3 of 23) 123428 ENSMUSG00000014592.21 ENSMUSG00000014592 ENSMUST00000135780 Camta1 protein_coding Interval_32041 chr11 104648586 104649140 + 0 NA intron (ENSMUSG00000020689.4, intron 6 of 10) protein_coding-intron (ENSMUSG00000020689.4, intron 10 of 14) 11474 ENSMUSG00000020689.4 ENSMUSG00000020689 ENSMUST00000127140 Itgb3 protein_coding Interval_171014 chr9 113724451 113725470 + 0 NA Intergenic Intergenic -16552 ENSMUSG00000033392.16 ENSMUSG00000033392 ENSMUST00000163895 Clasp2 protein_coding Interval_39434 chr12 87380714 87381607 + 0 NA intron (ENSMUSG00000021036.10, intron 1 of 4) protein_coding-intron (ENSMUSG00000021036.10, intron 1 of 11) 9168 ENSMUSG00000113648.1 ENSMUSG00000113648 ENSMUST00000221879 Gm48806 processed_pseudogene Interval_80844 chr18 49213570 49213962 + 0 NA Intergenic Intergenic -114489 ENSMUSG00000117724.1 ENSMUSG00000117724 ENSMUST00000235797 Gm50231 processed_pseudogene Interval_24174 chr11 30920064 30920348 + 0 NA intron (ENSMUSG00000020305.13, intron 1 of 9) protein_coding-intron (ENSMUSG00000020305.13, intron 1 of 9) -12286 ENSMUSG00000084146.1 ENSMUSG00000084146 ENSMUST00000120359 Gm12104 processed_pseudogene Interval_10890 chr1 176675024 176675220 + 0 NA Intergenic Intergenic -25495 ENSMUSG00000087875.1 ENSMUSG00000087875 ENSMUST00000157250 Gm26104 snRNA Interval_149589 chr7 99869318 99869998 + 0 NA intron (ENSMUSG00000035211.9, intron 2 of 6) protein_coding-intron (ENSMUSG00000035211.9, intron 3 of 18) -10747 ENSMUSG00000035227.7 ENSMUSG00000035227 ENSMUST00000208562 Spcs2 protein_coding Interval_73334 chr17 36263651 36265083 + 0 NA intron (ENSMUSG00000045409.16, intron 2 of 4) protein_coding-intron (ENSMUSG00000045409.16, intron 3 of 6) 4328 ENSMUSG00000045409.16 ENSMUSG00000045409 ENSMUST00000172832 Trim39 protein_coding Interval_73270 chr17 35896694 35898245 + 0 NA promoter-TSS (ENSMUSG00000050705.15) protein_coding-promoter-TSS (ENSMUSG00000050705.15) -366 ENSMUSG00000050705.15 ENSMUSG00000050705 ENSMUST00000154272 2310061I04Rik protein_coding Interval_104836 chr3 75696357 75696703 + 0 NA Intergenic Intergenic 2934 ENSMUSG00000102188.1 ENSMUSG00000102188 ENSMUST00000193087 Gm37193 TEC Interval_4567 chr1 75141261 75143283 + 0 NA promoter-TSS (ENSMUSG00000049339.16) protein_coding-promoter-TSS (ENSMUSG00000049339.16) -522 ENSMUSG00000049339.16 ENSMUSG00000049339 ENSMUST00000189345 Retreg2 protein_coding Interval_155582 chr8 34823591 34824733 + 0 NA Intergenic Intergenic 16865 ENSMUSG00000031530.6 ENSMUSG00000031530 ENSMUST00000033930 Dusp4 protein_coding Interval_112036 chr4 33377448 33378978 + 0 NA intron (ENSMUSG00000028274.17, intron 11 of 15) protein_coding-intron (ENSMUSG00000028274.17, intron 11 of 15) 53315 ENSMUSG00000028274.17 ENSMUSG00000028274 ENSMUST00000146870 Rngtt protein_coding Interval_161787 chr8 122775095 122776156 + 0 NA promoter-TSS (ENSMUSG00000015016.8) protein_coding-promoter-TSS (ENSMUSG00000015016.8) 139 ENSMUSG00000015016.8 ENSMUSG00000015016 ENSMUST00000212790 Acsf3 protein_coding Interval_46645 chr13 67876091 67877122 + 0 NA Intergenic Intergenic 13280 ENSMUSG00000064063.6 ENSMUSG00000064063 ENSMUST00000078471 BC048507 protein_coding Interval_47653 chr13 90809702 90811312 + 0 NA Intergenic Intergenic -32424 ENSMUSG00000114265.1 ENSMUSG00000114265 ENSMUST00000225134 Gm47521 processed_pseudogene Interval_120597 chr4 149599574 149600674 + 0 NA intron (ENSMUSG00000039953.13, intron 1 of 3) protein_coding-intron (ENSMUSG00000039953.13, intron 1 of 18) -27006 ENSMUSG00000039953.13 ENSMUSG00000039953 ENSMUST00000151895 Clstn1 protein_coding Interval_119985 chr4 141240587 141241131 + 0 NA intron (ENSMUSG00000028919.11, intron 2 of 3) protein_coding-intron (ENSMUSG00000028919.11, intron 2 of 3) -1406 ENSMUSG00000103366.1 ENSMUSG00000103366 ENSMUST00000195673 C630004L07Rik TEC Interval_136373 chr6 53907726 53908501 + 0 NA intron (ENSMUSG00000052955.5, intron 11 of 12) protein_coding-intron (ENSMUSG00000052955.5, intron 11 of 12) -35965 ENSMUSG00000094527.1 ENSMUSG00000094527 ENSMUST00000178568 Gm22910 snoRNA Interval_158171 chr8 79490854 79491443 + 0 NA promoter-TSS (ENSMUSG00000109851.1) processed_pseudogene-promoter-TSS (ENSMUSG00000109851.1) 6 ENSMUSG00000109774.1 ENSMUSG00000109774 ENSMUST00000211686 Gm45602 lincRNA Interval_169779 chr9 101191843 101192237 + 0 NA promoter-TSS (ENSMUSG00000104094.1) TEC-promoter-TSS (ENSMUSG00000104094.1) -758 ENSMUSG00000104094.1 ENSMUSG00000104094 ENSMUST00000193545 Gm37314 TEC Interval_146139 chr7 44297205 44298151 + 0 NA Intergenic Intergenic 3209 ENSMUSG00000108512.1 ENSMUSG00000108512 ENSMUST00000206467 Gm7238 processed_pseudogene Interval_149722 chr7 100937886 100939185 + 0 NA TTS (ENSMUSG00000048779.5) protein_coding-TTS (ENSMUSG00000048779.5) -12282 ENSMUSG00000109132.1 ENSMUSG00000109132 ENSMUST00000208262 Gm44545 TEC Interval_169519 chr9 98803945 98804725 + 0 NA intron (ENSMUSG00000102013.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000102013.1, intron 1 of 2) 15752 ENSMUSG00000102013.1 ENSMUSG00000102013 ENSMUST00000186387 E330023G01Rik lincRNA Interval_71200 chr17 21096181 21096913 + 0 NA intron (ENSMUSG00000102080.2, intron 3 of 9) lincRNA-intron (ENSMUSG00000102080.2, intron 3 of 9) 3375 ENSMUSG00000091550.1 ENSMUSG00000091550 ENSMUST00000169389 Gm6811 unprocessed_pseudogene Interval_3080 chr1 52955079 52955332 + 0 NA intron (ENSMUSG00000043629.12, intron 1 of 1) protein_coding-intron (ENSMUSG00000043629.12, intron 1 of 1) 64974 ENSMUSG00000043629.12 ENSMUSG00000043629 ENSMUST00000190726 1700019D03Rik protein_coding Interval_70865 chr17 15467237 15468045 + 0 NA Intergenic Intergenic 7836 ENSMUSG00000116985.1 ENSMUSG00000116985 ENSMUST00000231639 Gm49669 processed_pseudogene Interval_38677 chr12 80981628 80982724 + 0 NA Intergenic Intergenic -14098 ENSMUSG00000021135.8 ENSMUSG00000021135 ENSMUST00000220266 Slc10a1 protein_coding Interval_37994 chr12 73687258 73687938 + 0 NA intron (ENSMUSG00000021108.18, intron 3 of 14) protein_coding-intron (ENSMUSG00000021108.18, intron 2 of 13) 102802 ENSMUSG00000021108.18 ENSMUSG00000021108 ENSMUST00000220898 Prkch protein_coding Interval_150846 chr7 115588640 115589078 + 0 NA intron (ENSMUSG00000051910.13, intron 2 of 6) protein_coding-intron (ENSMUSG00000051910.13, intron 8 of 16) 257292 ENSMUSG00000051910.13 ENSMUSG00000051910 ENSMUST00000206912 Sox6 protein_coding Interval_64439 chr16 11359591 11361175 + 0 NA intron (ENSMUSG00000071669.14, intron 3 of 20) protein_coding-intron (ENSMUSG00000071669.14, intron 3 of 7) 37475 ENSMUSG00000071669.14 ENSMUSG00000071669 ENSMUST00000134941 Snx29 protein_coding Interval_59339 chr15 51774944 51775254 + 0 NA Intergenic Intergenic 61158 ENSMUSG00000022312.11 ENSMUSG00000022312 ENSMUST00000228583 Eif3h protein_coding Interval_31931 chr11 103927198 103927579 + 0 NA intron (ENSMUSG00000034187.18, intron 3 of 3) protein_coding-intron (ENSMUSG00000034187.18, intron 3 of 20) -47145 ENSMUSG00000092540.1 ENSMUSG00000092540 ENSMUST00000172606 Gm8738 processed_pseudogene Interval_50245 chr14 11206764 11207663 + 0 NA Intergenic Intergenic -20339 ENSMUSG00000072714.2 ENSMUSG00000072714 ENSMUST00000080237 Rpl21-ps4 processed_pseudogene Interval_113291 chr4 53195839 53197350 + 0 NA Intergenic Intergenic 20967 ENSMUSG00000087192.7 ENSMUSG00000087192 ENSMUST00000139222 4930412L05Rik processed_transcript Interval_36169 chr12 37525286 37525537 + 0 NA intron (ENSMUSG00000050103.18, intron 1 of 1) protein_coding-intron (ENSMUSG00000050103.18, intron 12 of 12) -43868 ENSMUSG00000114007.1 ENSMUSG00000114007 ENSMUST00000221458 Gm48660 processed_pseudogene Interval_20590 chr10 119243867 119244713 + 0 NA Intergenic Intergenic -31681 ENSMUSG00000020114.12 ENSMUSG00000020114 ENSMUST00000126373 Cand1 protein_coding Interval_43463 chr13 31456054 31456337 + 0 NA Intergenic Intergenic 28940 ENSMUSG00000089052.1 ENSMUSG00000089052 ENSMUST00000158427 Gm23351 snoRNA Interval_7856 chr1 134177601 134178516 + 0 NA Intergenic Intergenic -4118 ENSMUSG00000064246.10 ENSMUSG00000064246 ENSMUST00000134812 Chil1 protein_coding Interval_69989 chr17 4040366 4040586 + 0 NA Intergenic Intergenic 42519 ENSMUSG00000116975.1 ENSMUSG00000116975 ENSMUST00000231647 4930470H14Rik lincRNA Interval_68298 chr16 72703594 72704119 + 0 NA intron (ENSMUSG00000022883.11, intron 1 of 1) protein_coding-intron (ENSMUSG00000022883.11, intron 1 of 28) -272493 ENSMUSG00000022883.11 ENSMUSG00000022883 ENSMUST00000232432 Robo1 protein_coding Interval_75019 chr17 60959177 60959403 + 0 NA promoter-TSS (ENSMUSG00000117036.1) lincRNA-promoter-TSS (ENSMUSG00000117036.1) -412 ENSMUSG00000117036.1 ENSMUSG00000117036 ENSMUST00000233618 Gm33890 lincRNA Interval_115934 chr4 106380811 106381793 + 0 NA intron (ENSMUSG00000028514.15, intron 30 of 67) protein_coding-intron (ENSMUSG00000028514.15, intron 30 of 67) 65089 ENSMUSG00000028514.15 ENSMUSG00000028514 ENSMUST00000150521 Usp24 protein_coding Interval_105186 chr3 83585875 83587034 + 0 NA Intergenic Intergenic -12332 ENSMUSG00000101334.1 ENSMUSG00000101334 ENSMUST00000185938 1700028M03Rik lincRNA Interval_10750 chr1 174171690 174173019 + 0 NA promoter-TSS (ENSMUSG00000026532.7) protein_coding-promoter-TSS (ENSMUSG00000026532.7) 4652 ENSMUSG00000107114.1 ENSMUSG00000107114 ENSMUST00000201957 Gm43440 unprocessed_pseudogene Interval_165772 chr9 52495487 52496572 + 0 NA Intergenic Intergenic 91730 ENSMUSG00000111112.1 ENSMUSG00000111112 ENSMUST00000216653 Gm49389 processed_pseudogene Interval_77570 chr17 91904943 91905231 + 0 NA Intergenic Intergenic -32948 ENSMUSG00000117433.1 ENSMUSG00000117433 ENSMUST00000234556 Gm41654 lincRNA Interval_67240 chr16 44687531 44688865 + 0 NA Intergenic Intergenic -36159 ENSMUSG00000036208.13 ENSMUSG00000036208 ENSMUST00000132610 Nepro protein_coding Interval_26181 chr11 54935597 54936566 + 0 NA intron (ENSMUSG00000020400.17, intron 5 of 5) protein_coding-intron (ENSMUSG00000020400.17, intron 5 of 17) -11354 ENSMUSG00000082180.1 ENSMUSG00000082180 ENSMUST00000118301 Gm12230 processed_pseudogene Interval_141773 chr6 134376529 134377478 + 0 NA intron (ENSMUSG00000107666.1, intron 3 of 8) antisense-intron (ENSMUSG00000107666.1, intron 3 of 8) -21637 ENSMUSG00000030200.13 ENSMUSG00000030200 ENSMUST00000142612 Bcl2l14 protein_coding Interval_89854 chr2 25997501 25997707 + 0 NA TTS (ENSMUSG00000036352.16) protein_coding-TTS (ENSMUSG00000036352.16) -2421 ENSMUSG00000082357.1 ENSMUSG00000082357 ENSMUST00000118484 Gm13542 processed_pseudogene Interval_117482 chr4 124048436 124048708 + 0 NA Intergenic Intergenic 122338 ENSMUSG00000082515.1 ENSMUSG00000082515 ENSMUST00000118389 Gm12902 processed_pseudogene Interval_161171 chr8 118066022 118066810 + 0 NA Intergenic Intergenic -54538 ENSMUSG00000065028.1 ENSMUSG00000065028 ENSMUST00000083094 Gm25200 snoRNA Interval_62087 chr15 86369899 86370176 + 0 NA intron (ENSMUSG00000051864.10, intron 10 of 12) protein_coding-intron (ENSMUSG00000051864.10, intron 10 of 12) 105061 ENSMUSG00000115918.1 ENSMUSG00000115918 ENSMUST00000229685 A930001M01Rik antisense Interval_136886 chr6 62925797 62926016 + 0 NA Intergenic Intergenic -3240 ENSMUSG00000107854.1 ENSMUSG00000107854 ENSMUST00000204361 Gm5001 unprocessed_pseudogene Interval_50890 chr14 20505813 20506161 + 0 NA intron (ENSMUSG00000021816.11, intron 12 of 13) protein_coding-intron (ENSMUSG00000021816.11, intron 12 of 12) -9086 ENSMUSG00000021815.4 ENSMUSG00000021815 ENSMUST00000022353 Mss51 protein_coding Interval_63220 chr15 99796227 99796860 + 0 NA exon (ENSMUSG00000023022.14, exon 2 of 2) protein_coding-exon (ENSMUSG00000023022.14, exon 2 of 2) 6583 ENSMUSG00000065643.1 ENSMUSG00000065643 ENSMUST00000083709 Gm25897 snRNA Interval_35222 chr12 18420705 18421434 + 0 NA Intergenic Intergenic 33314 ENSMUSG00000113402.1 ENSMUSG00000113402 ENSMUST00000221998 Gm40848 processed_pseudogene Interval_128122 chr5 111127145 111128694 + 0 NA intron (ENSMUSG00000033209.17, intron 5 of 22) protein_coding-intron (ENSMUSG00000033209.17, intron 5 of 23) -30392 ENSMUSG00000106153.1 ENSMUSG00000106153 ENSMUST00000198098 Gm43677 TEC Interval_166766 chr9 62499683 62500765 + 0 NA intron (ENSMUSG00000041729.15, intron 1 of 2) protein_coding-intron (ENSMUSG00000041729.15, intron 1 of 11) -14805 ENSMUSG00000084540.1 ENSMUSG00000084540 ENSMUST00000122591 n-R5s84 rRNA Interval_54864 chr14 75891573 75891897 + 0 NA Intergenic Intergenic 43830 ENSMUSG00000065147.1 ENSMUSG00000065147 ENSMUST00000083213 Snora31 snoRNA Interval_4552 chr1 74971421 74972293 + 0 NA intron (ENSMUSG00000026162.7, intron 2 of 4) protein_coding-intron (ENSMUSG00000026162.7, intron 2 of 4) 17605 ENSMUSG00000103145.1 ENSMUSG00000103145 ENSMUST00000194616 Gm37744 TEC Interval_2534 chr1 40011445 40012078 + 0 NA exon (ENSMUSG00000026074.15, exon 22 of 31) protein_coding-exon (ENSMUSG00000026074.15, exon 22 of 31) 38607 ENSMUSG00000102985.1 ENSMUSG00000102985 ENSMUST00000193054 4930456G14Rik TEC Interval_79604 chr18 33967009 33967734 + 0 NA intron (ENSMUSG00000024376.7, intron 2 of 2) protein_coding-intron (ENSMUSG00000024376.7, intron 2 of 23) 39595 ENSMUSG00000024376.7 ENSMUSG00000024376 ENSMUST00000237971 Epb41l4a protein_coding Interval_164505 chr9 37526620 37528293 + 0 NA promoter-TSS (ENSMUSG00000001946.14) protein_coding-promoter-TSS (ENSMUSG00000001946.14) -7182 ENSMUSG00000001946.14 ENSMUSG00000001946 ENSMUST00000131832 Esam protein_coding Interval_11494 chr1 182194217 182194435 + 0 NA Intergenic Intergenic -29840 ENSMUSG00000091013.3 ENSMUSG00000091013 ENSMUST00000169123 Vmn1r1 protein_coding Interval_171388 chr9 117286698 117287042 + 0 NA intron (ENSMUSG00000039607.17, intron 3 of 15) protein_coding-intron (ENSMUSG00000039607.17, intron 2 of 14) 34334 ENSMUSG00000079669.2 ENSMUSG00000079669 ENSMUST00000172075 Gm17396 processed_transcript Interval_40004 chr12 100421466 100421726 + 0 NA intron (ENSMUSG00000033530.8, intron 5 of 9) protein_coding-intron (ENSMUSG00000033530.8, intron 5 of 19) 23064 ENSMUSG00000113864.1 ENSMUSG00000113864 ENSMUST00000222952 Gm48381 TEC Interval_140098 chr6 114130774 114132196 + 0 NA promoter-TSS (ENSMUSG00000030307.8) protein_coding-promoter-TSS (ENSMUSG00000030307.8) 66 ENSMUSG00000030307.8 ENSMUSG00000030307 ENSMUST00000203105 Slc6a11 protein_coding Interval_163694 chr9 24480334 24480584 + 0 NA intron (ENSMUSG00000043067.15, intron 4 of 22) protein_coding-intron (ENSMUSG00000043067.15, intron 4 of 22) 22681 ENSMUSG00000043067.15 ENSMUSG00000043067 ENSMUST00000129048 Dpy19l1 protein_coding Interval_131816 chr5 140068081 140069210 + 0 NA intron (ENSMUSG00000029554.15, intron 5 of 6) protein_coding-intron (ENSMUSG00000029554.15, intron 16 of 17) -5460 ENSMUSG00000085673.1 ENSMUSG00000085673 ENSMUST00000142625 Gm16122 antisense Interval_110552 chr4 3826440 3827326 + 0 NA Intergenic Intergenic 8263 ENSMUSG00000088351.1 ENSMUSG00000088351 ENSMUST00000157726 Gm24016 snoRNA Interval_119035 chr4 135116311 135116849 + 0 NA Intergenic Intergenic 3867 ENSMUSG00000086884.1 ENSMUSG00000086884 ENSMUST00000146152 Gm16225 lincRNA Interval_18592 chr10 88285102 88285427 + 0 NA Intergenic Intergenic -12033 ENSMUSG00000112259.1 ENSMUSG00000112259 ENSMUST00000217977 Gm17980 processed_pseudogene Interval_161323 chr8 119736659 119737097 + 0 NA intron (ENSMUSG00000034112.9, intron 10 of 26) protein_coding-intron (ENSMUSG00000034112.9, intron 10 of 26) 22424 ENSMUSG00000110445.1 ENSMUSG00000110445 ENSMUST00000212203 Gm45747 TEC Interval_37063 chr12 57230073 57231548 + 0 NA intron (ENSMUSG00000047022.18, intron 1 of 6) protein_coding-intron (ENSMUSG00000047022.18, intron 1 of 10) 383 ENSMUSG00000047022.18 ENSMUSG00000047022 ENSMUST00000128945 Mipol1 protein_coding Interval_166644 chr9 61573345 61575205 + 0 NA Intergenic Intergenic 64552 ENSMUSG00000111381.1 ENSMUSG00000111381 ENSMUST00000213400 Gm34424 transcribed_processed_pseudogene Interval_136751 chr6 59024114 59025046 + 0 NA promoter-TSS (ENSMUSG00000037709.13) protein_coding-promoter-TSS (ENSMUSG00000037709.13) -137 ENSMUSG00000037709.13 ENSMUSG00000037709 ENSMUST00000204616 Fam13a protein_coding Interval_67116 chr16 43464130 43465214 + 0 NA intron (ENSMUSG00000022708.16, intron 2 of 5) protein_coding-intron (ENSMUSG00000022708.16, intron 3 of 8) -43485 ENSMUSG00000022708.16 ENSMUSG00000022708 ENSMUST00000114695 Zbtb20 protein_coding Interval_9869 chr1 163517053 163517375 + 0 NA Intergenic Intergenic -90163 ENSMUSG00000101869.1 ENSMUSG00000101869 ENSMUST00000185992 Gm29500 lincRNA Interval_148860 chr7 89360348 89360869 + 0 NA intron (ENSMUSG00000039428.11, intron 1 of 8) protein_coding-intron (ENSMUSG00000039428.11, intron 1 of 8) 22238 ENSMUSG00000109327.1 ENSMUSG00000109327 ENSMUST00000207056 Gm44995 antisense Interval_154965 chr8 25335353 25336922 + 0 NA Intergenic Intergenic -29867 ENSMUSG00000110140.1 ENSMUSG00000110140 ENSMUST00000209774 5430421F17Rik lincRNA Interval_52382 chr14 45496505 45497961 + 0 NA intron (ENSMUSG00000037712.16, intron 2 of 2) protein_coding-intron (ENSMUSG00000037712.16, intron 3 of 14) -5148 ENSMUSG00000115275.1 ENSMUSG00000115275 ENSMUST00000228572 9630050E16Rik TEC Interval_114056 chr4 62782154 62782406 + 0 NA Intergenic Intergenic -30148 ENSMUSG00000077161.1 ENSMUSG00000077161 ENSMUST00000103973 Gm24117 snoRNA Interval_16630 chr10 66574650 66575164 + 0 NA Intergenic Intergenic -66011 ENSMUSG00000101338.1 ENSMUSG00000101338 ENSMUST00000189480 Gm28139 lincRNA Interval_138406 chr6 87931051 87931578 + 0 NA intron (ENSMUSG00000030060.14, intron 4 of 5) protein_coding-intron (ENSMUSG00000030060.14, intron 5 of 6) -16855 ENSMUSG00000097763.1 ENSMUSG00000097763 ENSMUST00000181696 Gm26636 antisense Interval_30198 chr11 90449981 90450152 + 0 NA Intergenic Intergenic -62093 ENSMUSG00000003949.16 ENSMUSG00000003949 ENSMUST00000145786 Hlf protein_coding Interval_23445 chr11 22673540 22673884 + 0 NA Intergenic Intergenic -47048 ENSMUSG00000083008.1 ENSMUSG00000083008 ENSMUST00000119022 Gm12053 processed_pseudogene Interval_136733 chr6 58751235 58751452 + 0 NA Intergenic Intergenic 30594 ENSMUSG00000108164.1 ENSMUSG00000108164 ENSMUST00000203675 Gm43899 processed_pseudogene Interval_1803 chr1 33883484 33884227 + 0 NA promoter-TSS (ENSMUSG00000042182.16) protein_coding-promoter-TSS (ENSMUSG00000042182.16) -375 ENSMUSG00000042182.16 ENSMUSG00000042182 ENSMUST00000139700 Bend6 protein_coding Interval_2183 chr1 36903067 36904696 + 0 NA intron (ENSMUSG00000026116.11, intron 1 of 5) protein_coding-intron (ENSMUSG00000026116.11, intron 1 of 40) 12658 ENSMUSG00000102930.1 ENSMUSG00000102930 ENSMUST00000194317 Gm38115 sense_intronic Interval_161568 chr8 121263826 121264043 + 0 NA intron (ENSMUSG00000097384.1, intron 1 of 1) protein_coding-intron (ENSMUSG00000092329.1, intron 1 of 15) -60332 ENSMUSG00000097097.2 ENSMUSG00000097097 ENSMUST00000212635 5033426O07Rik lincRNA Interval_13065 chr10 10996571 10997487 + 0 NA intron (ENSMUSG00000019828.13, intron 2 of 9) protein_coding-intron (ENSMUSG00000019828.13, intron 2 of 8) -38887 ENSMUSG00000111921.1 ENSMUSG00000111921 ENSMUST00000218933 Gm48406 processed_pseudogene Interval_101132 chr2 178257300 178257706 + 0 NA intron (ENSMUSG00000027525.18, intron 2 of 12) protein_coding-intron (ENSMUSG00000027525.18, intron 2 of 12) -70053 ENSMUSG00000027525.18 ENSMUSG00000027525 ENSMUST00000133267 Phactr3 protein_coding Interval_136112 chr6 51150881 51152664 + 0 NA Intergenic Intergenic 118138 ENSMUSG00000065505.1 ENSMUSG00000065505 ENSMUST00000083571 Mir148a miRNA Interval_63631 chr15 102445335 102446058 + 0 NA intron (ENSMUSG00000023047.11, intron 1 of 1) protein_coding-intron (ENSMUSG00000023047.11, intron 1 of 10) 248 ENSMUSG00000023047.11 ENSMUSG00000023047 ENSMUST00000161376 Amhr2 protein_coding Interval_13712 chr10 21333582 21333980 + 0 NA intron (ENSMUSG00000112654.1, intron 1 of 3) protein_coding-intron (ENSMUSG00000019977.16, intron 4 of 17) 8276 ENSMUSG00000112654.1 ENSMUSG00000112654 ENSMUST00000218108 4930455C13Rik antisense Interval_163306 chr9 20744038 20744586 + 0 NA intron (ENSMUSG00000032172.8, intron 1 of 5) protein_coding-intron (ENSMUSG00000032172.8, intron 1 of 5) -17375 ENSMUSG00000032172.8 ENSMUSG00000032172 ENSMUST00000215039 Olfm2 protein_coding Interval_46998 chr13 74121140 74121904 + 0 NA promoter-TSS (ENSMUSG00000036123.8) protein_coding-promoter-TSS (ENSMUSG00000036123.8) 7 ENSMUSG00000036123.8 ENSMUSG00000036123 ENSMUST00000221703 Slc9a3 protein_coding Interval_171923 chr9 122601032 122601241 + 0 NA intron (ENSMUSG00000097736.8, intron 2 of 3) lincRNA-intron (ENSMUSG00000097736.8, intron 2 of 3) 28634 ENSMUSG00000097736.8 ENSMUSG00000097736 ENSMUST00000181719 9530059O14Rik lincRNA Interval_45932 chr13 59423270 59424554 + 0 NA TTS (ENSMUSG00000114787.1) lincRNA-TTS (ENSMUSG00000114787.1) -4658 ENSMUSG00000114623.1 ENSMUSG00000114623 ENSMUST00000225137 Gm34788 lincRNA Interval_169566 chr9 99163508 99164637 + 0 NA Intergenic Intergenic -24147 ENSMUSG00000032462.14 ENSMUSG00000032462 ENSMUST00000124723 Pik3cb protein_coding Interval_84031 chr19 6847958 6848717 + 0 NA promoter-TSS (ENSMUSG00000047810.9) protein_coding-promoter-TSS (ENSMUSG00000047810.9) 16 ENSMUSG00000047810.9 ENSMUSG00000047810 ENSMUST00000237252 Ccdc88b protein_coding Interval_45959 chr13 59655700 59657449 + 0 NA intron (ENSMUSG00000021556.12, intron 3 of 5) protein_coding-intron (ENSMUSG00000021556.12, intron 3 of 9) 19198 ENSMUSG00000021556.12 ENSMUSG00000021556 ENSMUST00000224160 Golm1 protein_coding Interval_12830 chr10 5953838 5954336 + 0 NA Intergenic Intergenic -31701 ENSMUSG00000019775.17 ENSMUSG00000019775 ENSMUST00000019909 Rgs17 protein_coding Interval_18213 chr10 83733775 83734355 + 0 NA intron (ENSMUSG00000087651.3, intron 1 of 1) protein_coding-intron (ENSMUSG00000087651.3, intron 1 of 5) -3844 ENSMUSG00000087651.3 ENSMUSG00000087651 ENSMUST00000218623 1500009L16Rik protein_coding Interval_9657 chr1 160786689 160787049 + 0 NA intron (ENSMUSG00000026721.16, intron 1 of 3) protein_coding-intron (ENSMUSG00000026721.16, intron 1 of 20) -11813 ENSMUSG00000102852.1 ENSMUSG00000102852 ENSMUST00000195784 Gm37083 lincRNA Interval_144664 chr7 27402673 27403008 + 0 NA exon (ENSMUSG00000011751.16, exon 17 of 36) protein_coding-exon (ENSMUSG00000011751.16, exon 17 of 36) -30296 ENSMUSG00000108416.1 ENSMUSG00000108416 ENSMUST00000138087 Gm44924 processed_transcript Interval_106187 chr3 94456371 94456993 + 0 NA Intergenic Intergenic 3513 ENSMUSG00000104695.1 ENSMUSG00000104695 ENSMUST00000197970 Gm30023 processed_pseudogene Interval_113897 chr4 59695051 59695259 + 0 NA intron (ENSMUSG00000045071.14, intron 2 of 3) protein_coding-intron (ENSMUSG00000045071.14, intron 2 of 2) -38103 ENSMUSG00000045071.14 ENSMUSG00000045071 ENSMUST00000221633 E130308A19Rik protein_coding Interval_5324 chr1 87568095 87568939 + 0 NA intron (ENSMUSG00000026259.14, intron 1 of 14) protein_coding-intron (ENSMUSG00000026259.14, intron 1 of 14) -5510 ENSMUSG00000079434.8 ENSMUSG00000079434 ENSMUST00000070898 Neu2 protein_coding Interval_156759 chr8 58127612 58127873 + 0 NA intron (ENSMUSG00000096914.3, intron 5 of 12) protein_coding-intron (ENSMUSG00000096914.3, intron 5 of 12) -118845 ENSMUSG00000109963.1 ENSMUSG00000109963 ENSMUST00000211516 Gm45635 TEC Interval_164293 chr9 35055489 35055874 + 0 NA exon (ENSMUSG00000032038.7, exon 1 of 3) protein_coding-exon (ENSMUSG00000032038.7, exon 1 of 3) 16950 ENSMUSG00000032038.7 ENSMUSG00000032038 ENSMUST00000215463 St3gal4 protein_coding Interval_133202 chr5 150512600 150513482 + 0 NA intron (ENSMUSG00000056586.8, intron 2 of 3) protein_coding-intron (ENSMUSG00000056586.8, intron 2 of 3) -1703 ENSMUSG00000082104.1 ENSMUSG00000082104 ENSMUST00000117215 Gm15933 processed_pseudogene Interval_89905 chr2 26363728 26364111 + 0 NA intron (ENSMUSG00000036281.13, intron 1 of 2) protein_coding-intron (ENSMUSG00000036281.13, intron 21 of 22) -1578 ENSMUSG00000086779.1 ENSMUSG00000086779 ENSMUST00000137869 Gm13562 processed_transcript Interval_5251 chr1 86858691 86860091 + 0 NA intron (ENSMUSG00000053333.15, intron 9 of 20) protein_coding-intron (ENSMUSG00000053333.15, intron 8 of 20) -14959 ENSMUSG00000102293.1 ENSMUSG00000102293 ENSMUST00000192464 Gm37541 TEC Interval_87562 chr19 53452383 53452712 + 0 NA exon (ENSMUSG00000097636.8, exon 2 of 2) processed_transcript-exon (ENSMUSG00000097636.8, exon 2 of 2) -8075 ENSMUSG00000097779.2 ENSMUSG00000097779 ENSMUST00000180442 4833407H14Rik lincRNA Interval_133326 chr5 151731760 151732065 + 0 NA Intergenic Intergenic -29444 ENSMUSG00000092806.2 ENSMUSG00000092806 ENSMUST00000175065 Gm26463 miRNA Interval_23455 chr11 22719272 22719765 + 0 NA Intergenic Intergenic 13468 ENSMUSG00000085979.1 ENSMUSG00000085979 ENSMUST00000143643 Gm12055 lincRNA Interval_97530 chr2 138825597 138825866 + 0 NA Intergenic Intergenic 5802 ENSMUSG00000088983.1 ENSMUSG00000088983 ENSMUST00000158358 Mir1952 miRNA Interval_89734 chr2 25094296 25095841 + 0 NA promoter-TSS (ENSMUSG00000036805.13) protein_coding-promoter-TSS (ENSMUSG00000036805.13) 63 ENSMUSG00000036805.13 ENSMUSG00000036805 ENSMUST00000044018 Noxa1 protein_coding Interval_68104 chr16 65105019 65106112 + 0 NA intron (ENSMUSG00000050783.5, intron 1 of 2) protein_coding-intron (ENSMUSG00000050783.5, intron 1 of 2) 289 ENSMUSG00000050783.5 ENSMUSG00000050783 ENSMUST00000063076 Htr1f protein_coding Interval_2239 chr1 37286983 37287356 + 0 NA Intergenic Intergenic 12528 ENSMUSG00000102231.1 ENSMUSG00000102231 ENSMUST00000192404 1700074A21Rik TEC Interval_71163 chr17 20591395 20591654 + 0 NA intron (ENSMUSG00000091259.2, intron 1 of 6) protein_coding-intron (ENSMUSG00000091259.2, intron 1 of 5) 4899 ENSMUSG00000091259.2 ENSMUSG00000091259 ENSMUST00000233630 Vmn2r110 protein_coding Interval_1172 chr1 16591029 16591491 + 0 NA intron (ENSMUSG00000025939.19, intron 3 of 5) protein_coding-intron (ENSMUSG00000025939.19, intron 3 of 5) -27300 ENSMUSG00000102457.1 ENSMUSG00000102457 ENSMUST00000195710 Gm38342 TEC Interval_142497 chr6 142878992 142879240 + 0 NA intron (ENSMUSG00000030283.7, intron 2 of 4) protein_coding-intron (ENSMUSG00000030283.7, intron 2 of 4) 64731 ENSMUSG00000072683.3 ENSMUSG00000072683 ENSMUST00000159599 Gm7457 processed_transcript Interval_129783 chr5 122324919 122325110 + 0 NA TTS (ENSMUSG00000038569.13) protein_coding-TTS (ENSMUSG00000038569.13) 22592 ENSMUSG00000083909.1 ENSMUSG00000083909 ENSMUST00000120513 Gm15842 processed_pseudogene Interval_34079 chr11 120386854 120387647 + 0 NA intron (ENSMUSG00000039703.15, intron 13 of 16) protein_coding-intron (ENSMUSG00000039703.15, intron 13 of 16) -3747 ENSMUSG00000039703.15 ENSMUSG00000039703 ENSMUST00000136095 Nploc4 protein_coding Interval_77413 chr17 88545435 88545906 + 0 NA intron (ENSMUSG00000034709.8, intron 3 of 21) protein_coding-intron (ENSMUSG00000034709.8, intron 3 of 21) 12643 ENSMUSG00000103075.1 ENSMUSG00000103075 ENSMUST00000195386 Gm38109 TEC Interval_111925 chr4 32601083 32601733 + 0 NA exon (ENSMUSG00000051056.5, exon 1 of 1) protein_coding-exon (ENSMUSG00000051056.5, exon 1 of 1) 1352 ENSMUSG00000051056.5 ENSMUSG00000051056 ENSMUST00000056517 Gja10 protein_coding Interval_94689 chr2 93390160 93391240 + 0 NA Intergenic Intergenic -3871 ENSMUSG00000089073.1 ENSMUSG00000089073 ENSMUST00000158448 Gm23380 rRNA Interval_91963 chr2 52055379 52056188 + 0 NA intron (ENSMUSG00000053475.5, intron 5 of 5) protein_coding-intron (ENSMUSG00000053475.5, intron 5 of 5) 17774 ENSMUSG00000053475.5 ENSMUSG00000053475 ENSMUST00000065927 Tnfaip6 protein_coding Interval_162484 chr9 3093972 3094871 + 0 NA Intergenic Intergenic 44318 ENSMUSG00000110425.1 ENSMUSG00000110425 ENSMUST00000212713 Gm32390 processed_pseudogene Interval_160305 chr8 107937919 107938477 + 0 NA Intergenic Intergenic -56361 ENSMUSG00000038872.10 ENSMUSG00000038872 ENSMUST00000043896 Zfhx3 protein_coding Interval_15229 chr10 43516427 43517402 + 0 NA Intergenic Intergenic -1657 ENSMUSG00000111368.1 ENSMUSG00000111368 ENSMUST00000216546 Gm47889 lincRNA Interval_8306 chr1 137117289 137118371 + 0 NA Intergenic Intergenic 97817 ENSMUSG00000077207.1 ENSMUSG00000077207 ENSMUST00000104019 Gm25609 snRNA Interval_6169 chr1 98925852 98926606 + 0 NA Intergenic Intergenic -91135 ENSMUSG00000087804.1 ENSMUSG00000087804 ENSMUST00000157179 Gm23434 snRNA Interval_82487 chr18 74427111 74427657 + 0 NA Intergenic Intergenic 6579 ENSMUSG00000118303.1 ENSMUSG00000118303 ENSMUST00000235981 Gm50168 processed_pseudogene Interval_128392 chr5 113084430 113084822 + 0 NA Intergenic Intergenic -4235 ENSMUSG00000029352.14 ENSMUSG00000029352 ENSMUST00000136352 Crybb3 protein_coding Interval_71323 chr17 22230515 22231369 + 0 NA Intergenic Intergenic -5326 ENSMUSG00000096433.2 ENSMUSG00000096433 ENSMUST00000179996 Zfp994 protein_coding Interval_141476 chr6 128487522 128488169 + 0 NA promoter-TSS (ENSMUSG00000030359.14) protein_coding-promoter-TSS (ENSMUSG00000030359.14) 10 ENSMUSG00000030359.14 ENSMUSG00000030359 ENSMUST00000143664 Pzp protein_coding Interval_165908 chr9 54568854 54569389 + 0 NA Intergenic Intergenic -8903 ENSMUSG00000037493.6 ENSMUSG00000037493 ENSMUST00000041901 Cib2 protein_coding Interval_130242 chr5 125156721 125159766 + 0 NA intron (ENSMUSG00000029478.16, intron 1 of 47) protein_coding-intron (ENSMUSG00000029478.16, intron 1 of 46) 71402 ENSMUSG00000106663.1 ENSMUSG00000106663 ENSMUST00000198978 Gm42839 antisense Interval_34866 chr12 12819562 12820676 + 0 NA Intergenic Intergenic 32134 ENSMUSG00000091430.1 ENSMUSG00000091430 ENSMUST00000171380 Platr19 lincRNA Interval_91244 chr2 36305077 36305469 + 0 NA Intergenic Intergenic 3732 ENSMUSG00000113163.1 ENSMUSG00000113163 ENSMUST00000223545 Olfr335-ps polymorphic_pseudogene Interval_28655 chr11 77587302 77588446 + 0 NA intron (ENSMUSG00000017291.13, intron 1 of 19) protein_coding-intron (ENSMUSG00000017291.13, intron 1 of 19) 19941 ENSMUSG00000017291.13 ENSMUSG00000017291 ENSMUST00000058496 Taok1 protein_coding Interval_124226 chr5 41743959 41745404 + 0 NA Intergenic Intergenic 19820 ENSMUSG00000049691.8 ENSMUSG00000049691 ENSMUST00000060820 Nkx3-2 protein_coding Interval_261 KZ289068.1 396926 400344 + 0 NA NA NA NA NA Interval_107440 chr3 107712187 107713101 + 0 NA Intergenic Intergenic -16681 ENSMUSG00000027893.14 ENSMUSG00000027893 ENSMUST00000138116 Ahcyl1 protein_coding Interval_89191 chr2 17968092 17968470 + 0 NA Intergenic Intergenic 28677 ENSMUSG00000062651.4 ENSMUSG00000062651 ENSMUST00000105001 H2al2a protein_coding Interval_114593 chr4 82852932 82853215 + 0 NA intron (ENSMUSG00000028403.15, intron 2 of 7) protein_coding-intron (ENSMUSG00000028403.15, intron 2 of 8) 6488 ENSMUSG00000028403.15 ENSMUSG00000028403 ENSMUST00000156055 Zdhhc21 protein_coding Interval_160981 chr8 116638226 116638444 + 0 NA intron (ENSMUSG00000031758.10, intron 1 of 6) protein_coding-intron (ENSMUSG00000031758.10, intron 1 of 6) 94656 ENSMUSG00000031758.10 ENSMUSG00000031758 ENSMUST00000109102 Cdyl2 protein_coding Interval_40781 chr12 108327406 108328525 + 0 NA promoter-TSS (ENSMUSG00000097847.1) antisense-promoter-TSS (ENSMUSG00000097847.1) 65 ENSMUSG00000097847.1 ENSMUSG00000097847 ENSMUST00000181875 4930478K11Rik antisense Interval_165668 chr9 50800683 50801453 + 0 NA intron (ENSMUSG00000032059.13, intron 8 of 13) protein_coding-intron (ENSMUSG00000032059.13, intron 9 of 14) -1001 ENSMUSG00000032059.13 ENSMUSG00000032059 ENSMUST00000162596 Alg9 protein_coding Interval_157940 chr8 76863942 76864392 + 0 NA intron (ENSMUSG00000074235.4, intron 1 of 1) bidirectional_promoter_lncRNA-intron (ENSMUSG00000074235.4, intron 1 of 1) -1119 ENSMUSG00000087321.1 ENSMUSG00000087321 ENSMUST00000139800 Gm5353 processed_pseudogene Interval_110739 chr4 7775818 7776009 + 0 NA Intergenic Intergenic -12413 ENSMUSG00000082024.1 ENSMUSG00000082024 ENSMUST00000119446 Gm11794 processed_pseudogene Interval_115324 chr4 96354641 96355000 + 0 NA Intergenic Intergenic -6158 ENSMUSG00000066097.6 ENSMUSG00000066097 ENSMUST00000015368 Cyp2j11 protein_coding Interval_107832 chr3 115995186 115995600 + 0 NA intron (ENSMUSG00000054414.4, intron 2 of 10) protein_coding-intron (ENSMUSG00000054414.4, intron 2 of 10) -12435 ENSMUSG00000027963.14 ENSMUSG00000027963 ENSMUST00000106502 Extl2 protein_coding Interval_167251 chr9 66679759 66680305 + 0 NA Intergenic Intergenic -33697 ENSMUSG00000032373.15 ENSMUSG00000032373 ENSMUST00000134829 Car12 protein_coding Interval_9559 chr1 159399826 159400022 + 0 NA Intergenic Intergenic 21520 ENSMUSG00000103289.1 ENSMUSG00000103289 ENSMUST00000194705 Gm31256 processed_pseudogene Interval_103007 chr3 34293094 34293540 + 0 NA intron (ENSMUSG00000105265.4, intron 2 of 2) processed_transcript-intron (ENSMUSG00000105265.4, intron 2 of 4) 58395 ENSMUSG00000092196.2 ENSMUSG00000092196 ENSMUST00000174005 Gm38505 lincRNA Interval_26526 chr11 58393081 58393537 + 0 NA exon (ENSMUSG00000084384.3, exon 1 of 1) processed_pseudogene-exon (ENSMUSG00000084384.3, exon 1 of 1) 251 ENSMUSG00000084384.3 ENSMUSG00000084384 ENSMUST00000117893 Gm12251 processed_pseudogene Interval_35081 chr12 17170259 17170461 + 0 NA Intergenic Intergenic 6528 ENSMUSG00000051726.6 ENSMUSG00000051726 ENSMUST00000170580 Kcnf1 protein_coding Interval_61067 chr15 79037878 79039281 + 0 NA TTS (ENSMUSG00000006378.15) protein_coding-TTS (ENSMUSG00000006378.15) -3306 ENSMUSG00000114755.1 ENSMUSG00000114755 ENSMUST00000058004 Galr3 protein_coding Interval_74185 chr17 46952182 46952436 + 0 NA promoter-TSS (ENSMUSG00000023977.15) protein_coding-promoter-TSS (ENSMUSG00000023977.15) -154 ENSMUSG00000023977.15 ENSMUSG00000023977 ENSMUST00000225599 Ubr2 protein_coding Interval_169481 chr9 98128625 98128879 + 0 NA Intergenic Intergenic 58401 ENSMUSG00000046995.3 ENSMUSG00000046995 ENSMUST00000061643 2610303G11Rik lincRNA Interval_120583 chr4 149526096 149527150 + 0 NA intron (ENSMUSG00000028988.13, intron 1 of 4) protein_coding-intron (ENSMUSG00000028988.13, intron 1 of 4) -9341 ENSMUSG00000084646.1 ENSMUSG00000084646 ENSMUST00000122697 Gm24381 snRNA Interval_9105 chr1 153620336 153620584 + 0 NA exon (ENSMUSG00000099858.1, exon 1 of 1) processed_pseudogene-exon (ENSMUSG00000099858.1, exon 1 of 1) 213 ENSMUSG00000099858.1 ENSMUSG00000099858 ENSMUST00000186414 Gm6652 processed_pseudogene Interval_13013 chr10 9252467 9253095 + 0 NA Intergenic Intergenic -28030 ENSMUSG00000112543.1 ENSMUSG00000112543 ENSMUST00000218588 Gm48744 TEC Interval_30825 chr11 96727339 96728313 + 0 NA intron (ENSMUSG00000057058.16, intron 10 of 12) protein_coding-intron (ENSMUSG00000057058.16, intron 9 of 11) -38976 ENSMUSG00000085242.1 ENSMUSG00000085242 ENSMUST00000124865 Gm11537 antisense Interval_27477 chr11 68121778 68122027 + 0 NA intron (ENSMUSG00000020903.13, intron 6 of 6) protein_coding-intron (ENSMUSG00000020903.13, intron 7 of 7) -25938 ENSMUSG00000083924.1 ENSMUSG00000083924 ENSMUST00000120312 Gm12304 processed_pseudogene Interval_37996 chr12 73694627 73695541 + 0 NA intron (ENSMUSG00000021108.18, intron 5 of 14) protein_coding-intron (ENSMUSG00000021108.18, intron 4 of 13) -98399 ENSMUSG00000113321.1 ENSMUSG00000113321 ENSMUST00000222997 Gm8075 lincRNA Interval_91737 chr2 48948703 48950245 + 0 NA promoter-TSS (ENSMUSG00000026761.12) protein_coding-promoter-TSS (ENSMUSG00000026761.12) -39461 ENSMUSG00000026761.12 ENSMUSG00000026761 ENSMUST00000123271 Orc4 protein_coding Interval_89246 chr2 18399589 18399974 + 0 NA Intergenic Intergenic -60792 ENSMUSG00000082520.2 ENSMUSG00000082520 ENSMUST00000118436 Gm13349 processed_pseudogene Interval_150705 chr7 113609083 113609386 + 0 NA Intergenic Intergenic 16372 ENSMUSG00000109968.1 ENSMUSG00000109968 ENSMUST00000211320 Gm45612 processed_pseudogene Interval_83917 chr19 5567176 5569471 + 0 NA exon (ENSMUSG00000049562.6, exon 1 of 2) protein_coding-exon (ENSMUSG00000049562.6, exon 1 of 2) 298 ENSMUSG00000049562.6 ENSMUSG00000049562 ENSMUST00000096318 Ap5b1 protein_coding Interval_126165 chr5 80783612 80784182 + 0 NA Intergenic Intergenic -109757 ENSMUSG00000065235.1 ENSMUSG00000065235 ENSMUST00000083301 Gm22974 snRNA Interval_36466 chr12 45291134 45292064 + 0 NA Intergenic Intergenic -68100 ENSMUSG00000089226.1 ENSMUSG00000089226 ENSMUST00000158601 Gm22076 rRNA Interval_106879 chr3 101474101 101475077 + 0 NA Intergenic Intergenic -48936 ENSMUSG00000106137.1 ENSMUSG00000106137 ENSMUST00000196233 Gm42538 antisense Interval_25963 chr11 53196282 53197338 + 0 NA Intergenic Intergenic -3874 ENSMUSG00000058073.4 ENSMUSG00000058073 ENSMUST00000117979 Gm11189 processed_pseudogene Interval_135088 chr6 35287861 35289996 + 0 NA promoter-TSS (ENSMUSG00000029843.4) protein_coding-promoter-TSS (ENSMUSG00000029843.4) -754 ENSMUSG00000029843.4 ENSMUSG00000029843 ENSMUST00000122829 Slc13a4 protein_coding Interval_2777 chr1 44679765 44680157 + 0 NA intron (ENSMUSG00000056870.9, intron 2 of 3) protein_coding-intron (ENSMUSG00000056870.9, intron 1 of 10) -9183 ENSMUSG00000056870.9 ENSMUSG00000056870 ENSMUST00000162600 Gulp1 protein_coding Interval_130254 chr5 125240248 125240798 + 0 NA intron (ENSMUSG00000105039.1, intron 2 of 3) lincRNA-intron (ENSMUSG00000105039.1, intron 2 of 3) 32292 ENSMUSG00000105039.1 ENSMUSG00000105039 ENSMUST00000198586 Gm32585 lincRNA Interval_12556 chr1 195267059 195267390 + 0 NA Intergenic Intergenic -7376 ENSMUSG00000104297.1 ENSMUSG00000104297 ENSMUST00000192733 Gm38046 TEC Interval_104118 chr3 58738460 58739891 + 0 NA intron (ENSMUSG00000097725.4, intron 5 of 8) lincRNA-intron (ENSMUSG00000097725.4, intron 1 of 5) 41614 ENSMUSG00000105226.1 ENSMUSG00000105226 ENSMUST00000197219 A930028O11Rik TEC Interval_77990 chr18 6480141 6480352 + 0 NA intron (ENSMUSG00000024240.13, intron 1 of 13) protein_coding-intron (ENSMUSG00000024240.13, intron 1 of 13) -9909 ENSMUSG00000101320.1 ENSMUSG00000101320 ENSMUST00000189675 Gm28529 antisense Interval_25337 chr11 46454519 46454926 + 0 NA promoter-TSS (ENSMUSG00000020399.14) protein_coding-promoter-TSS (ENSMUSG00000020399.14) -247 ENSMUSG00000020399.14 ENSMUSG00000020399 ENSMUST00000109229 Havcr2 protein_coding Interval_65935 chr16 30372894 30373434 + 0 NA intron (ENSMUSG00000022533.14, intron 3 of 4) protein_coding-intron (ENSMUSG00000022533.14, intron 2 of 32) -39316 ENSMUSG00000022533.14 ENSMUSG00000022533 ENSMUST00000136065 Atp13a3 protein_coding Interval_34905 chr12 13209944 13210176 + 0 NA Intergenic Intergenic 39103 ENSMUSG00000037149.10 ENSMUSG00000037149 ENSMUST00000221623 Ddx1 protein_coding Interval_88418 chr2 4959677 4960067 + 0 NA promoter-TSS (ENSMUSG00000069188.5) processed_pseudogene-promoter-TSS (ENSMUSG00000069188.5) -120 ENSMUSG00000069188.5 ENSMUSG00000069188 ENSMUST00000101199 Gm13192 processed_pseudogene Interval_22520 chr11 11413590 11414535 + 0 NA intron (ENSMUSG00000020193.3, intron 4 of 7) protein_coding-intron (ENSMUSG00000020193.3, intron 4 of 7) 13450 ENSMUSG00000064766.1 ENSMUSG00000064766 ENSMUST00000082832 Gm26458 snoRNA Interval_76094 chr17 74886952 74887263 + 0 NA Intergenic Intergenic -26173 ENSMUSG00000117441.1 ENSMUSG00000117441 ENSMUST00000234097 Gm50021 antisense Interval_124059 chr5 37917106 37918392 + 0 NA Intergenic Intergenic 23399 ENSMUSG00000106718.1 ENSMUSG00000106718 ENSMUST00000201327 Gm20052 lincRNA Interval_115685 chr4 102099792 102100748 + 0 NA intron (ENSMUSG00000028525.16, intron 1 of 6) protein_coding-intron (ENSMUSG00000028525.16, intron 1 of 16) -51143 ENSMUSG00000082264.1 ENSMUSG00000082264 ENSMUST00000118151 Gm12799 processed_pseudogene Interval_104167 chr3 59439662 59439903 + 0 NA Intergenic Intergenic 8245 ENSMUSG00000102550.1 ENSMUSG00000102550 ENSMUST00000192231 Gm8276 processed_pseudogene Interval_33994 chr11 119897094 119897666 + 0 NA intron (ENSMUSG00000025583.15, intron 32 of 32) protein_coding-intron (ENSMUSG00000025583.15, intron 33 of 33) -16635 ENSMUSG00000025371.12 ENSMUSG00000025371 ENSMUST00000137055 Chmp6 protein_coding Interval_10963 chr1 177616276 177617092 + 0 NA Intergenic Intergenic 20253 ENSMUSG00000103767.1 ENSMUSG00000103767 ENSMUST00000192759 Gm37858 TEC Interval_51601 chr14 30606577 30608126 + 0 NA promoter-TSS (ENSMUSG00000021948.17) protein_coding-promoter-TSS (ENSMUSG00000021948.17) 1944 ENSMUSG00000021948.17 ENSMUSG00000021948 ENSMUST00000227078 Prkcd protein_coding Interval_53944 chr14 63605927 63607533 + 0 NA promoter-TSS (ENSMUSG00000035067.9) protein_coding-promoter-TSS (ENSMUSG00000035067.9) -296 ENSMUSG00000035067.9 ENSMUSG00000035067 ENSMUST00000120820 Xkr6 protein_coding Interval_14669 chr10 38553510 38554409 + 0 NA Intergenic Intergenic 61522 ENSMUSG00000094521.1 ENSMUSG00000094521 ENSMUST00000177920 Gm22911 snRNA Interval_15671 chr10 53385198 53386536 + 0 NA Intergenic Intergenic -5920 ENSMUSG00000038594.9 ENSMUSG00000038594 ENSMUST00000218596 Cep85l protein_coding Interval_140606 chr6 120028498 120028812 + 0 NA intron (ENSMUSG00000045962.16, intron 1 of 25) protein_coding-intron (ENSMUSG00000045962.16, intron 1 of 27) 5656 ENSMUSG00000076217.1 ENSMUSG00000076217 ENSMUST00000102262 Mir706 miRNA Interval_136979 chr6 65380214 65381801 + 0 NA promoter-TSS (ENSMUSG00000029917.15) protein_coding-promoter-TSS (ENSMUSG00000029917.15) -287 ENSMUSG00000029917.15 ENSMUSG00000029917 ENSMUST00000136016 Qrfprl protein_coding Interval_20700 chr10 120375485 120375916 + 0 NA intron (ENSMUSG00000056758.14, intron 3 of 5) antisense-intron (ENSMUSG00000034764.15, intron 2 of 2) 11487 ENSMUSG00000034764.15 ENSMUSG00000034764 ENSMUST00000161511 1700006J14Rik antisense Interval_8348 chr1 137639390 137640320 + 0 NA Intergenic Intergenic -94463 ENSMUSG00000088715.1 ENSMUSG00000088715 ENSMUST00000158090 Gm22727 snoRNA Interval_75584 chr17 68841006 68842215 + 0 NA exon (ENSMUSG00000095407.2, exon 2 of 2) protein_coding-exon (ENSMUSG00000095407.2, exon 2 of 2) -2415 ENSMUSG00000117093.1 ENSMUSG00000117093 ENSMUST00000232893 Gm49949 TEC Interval_90098 chr2 28006441 28006639 + 0 NA intron (ENSMUSG00000026837.16, intron 42 of 65) protein_coding-intron (ENSMUSG00000026837.16, intron 42 of 65) -15746 ENSMUSG00000026837.16 ENSMUSG00000026837 ENSMUST00000238851 Col5a1 protein_coding Interval_160801 chr8 112428163 112428392 + 0 NA Intergenic Intergenic 141298 ENSMUSG00000098075.1 ENSMUSG00000098075 ENSMUST00000182027 Gm26994 antisense Interval_18218 chr10 83763772 83764464 + 0 NA Intergenic Intergenic 26209 ENSMUSG00000087651.3 ENSMUSG00000087651 ENSMUST00000218623 1500009L16Rik protein_coding Interval_120805 chr4 150742852 150744015 + 0 NA Intergenic Intergenic -64641 ENSMUSG00000085869.1 ENSMUSG00000085869 ENSMUST00000149065 Gm16079 lincRNA Interval_108434 chr3 127169625 127169944 + 0 NA intron (ENSMUSG00000032826.19, intron 1 of 31) protein_coding-intron (ENSMUSG00000032826.19, intron 3 of 14) -4545 ENSMUSG00000032826.19 ENSMUSG00000032826 ENSMUST00000189368 Ank2 protein_coding Interval_153610 chr8 3701426 3701852 + 0 NA Intergenic Intergenic -8165 ENSMUSG00000089956.1 ENSMUSG00000089956 ENSMUST00000160490 Gm16553 antisense Interval_26473 chr11 58058561 58058865 + 0 NA exon (ENSMUSG00000037331.15, exon 19 of 19) protein_coding-exon (ENSMUSG00000037331.15, exon 19 of 19) 34421 ENSMUSG00000086962.4 ENSMUSG00000086962 ENSMUST00000137124 Gm12248 protein_coding Interval_43362 chr13 29688614 29689054 + 0 NA intron (ENSMUSG00000006191.17, intron 8 of 11) protein_coding-intron (ENSMUSG00000006191.17, intron 8 of 15) -171380 ENSMUSG00000006191.17 ENSMUSG00000006191 ENSMUST00000129231 Cdkal1 protein_coding Interval_156763 chr8 58234040 58234510 + 0 NA intron (ENSMUSG00000096914.3, intron 5 of 12) protein_coding-intron (ENSMUSG00000096914.3, intron 5 of 12) -12312 ENSMUSG00000109963.1 ENSMUSG00000109963 ENSMUST00000211516 Gm45635 TEC Interval_136437 chr6 54470826 54471157 + 0 NA intron (ENSMUSG00000108081.1, intron 1 of 1) protein_coding-intron (ENSMUSG00000086040.8, intron 2 of 7) 2179 ENSMUSG00000108081.1 ENSMUSG00000108081 ENSMUST00000203985 Gm44026 antisense Interval_145087 chr7 29964631 29965826 + 0 NA TTS (ENSMUSG00000083669.5) processed_pseudogene-TTS (ENSMUSG00000083669.5) 337 ENSMUSG00000083669.5 ENSMUSG00000083669 ENSMUST00000121822 Mif-ps processed_pseudogene Interval_119270 chr4 136573634 136574025 + 0 NA intron (ENSMUSG00000036940.15, intron 2 of 10) protein_coding-intron (ENSMUSG00000036940.15, intron 4 of 16) 10831 ENSMUSG00000082711.1 ENSMUSG00000082711 ENSMUST00000118562 Gm12987 processed_pseudogene Interval_171827 chr9 121474996 121475209 + 0 NA TTS (ENSMUSG00000032536.12) protein_coding-TTS (ENSMUSG00000032536.12) 19408 ENSMUSG00000032532.7 ENSMUSG00000032532 ENSMUST00000217581 Cck protein_coding Interval_89245 chr2 18392063 18393348 + 0 NA promoter-TSS (ENSMUSG00000026740.12) protein_coding-promoter-TSS (ENSMUSG00000026740.12) -53716 ENSMUSG00000082520.2 ENSMUSG00000082520 ENSMUST00000118436 Gm13349 processed_pseudogene Interval_15441 chr10 46691744 46692531 + 0 NA Intergenic Intergenic 21993 ENSMUSG00000111754.1 ENSMUSG00000111754 ENSMUST00000217086 Gm19994 processed_pseudogene Interval_104864 chr3 76508242 76509139 + 0 NA intron (ENSMUSG00000034098.14, intron 7 of 15) protein_coding-intron (ENSMUSG00000034098.14, intron 7 of 15) -38001 ENSMUSG00000103920.1 ENSMUSG00000103920 ENSMUST00000192613 Gm37897 TEC Interval_51831 chr14 32569114 32570107 + 0 NA exon (ENSMUSG00000054051.7, exon 17 of 21) protein_coding-exon (ENSMUSG00000054051.7, exon 17 of 21) 17035 ENSMUSG00000054051.7 ENSMUSG00000054051 ENSMUST00000228549 Ercc6 protein_coding Interval_55388 chr14 86405449 86406524 + 0 NA intron (ENSMUSG00000115664.1, intron 2 of 3) lincRNA-intron (ENSMUSG00000115664.1, intron 2 of 3) -2536 ENSMUSG00000087812.1 ENSMUSG00000087812 ENSMUST00000157187 Gm25115 snRNA Interval_51571 chr14 30390842 30391054 + 0 NA intron (ENSMUSG00000015968.18, intron 1 of 1) protein_coding-intron (ENSMUSG00000015968.18, intron 1 of 46) -6594 ENSMUSG00000114670.1 ENSMUSG00000114670 ENSMUST00000224661 Gm18072 processed_pseudogene Interval_103511 chr3 45681167 45682179 + 0 NA Intergenic Intergenic 9231 ENSMUSG00000103534.1 ENSMUSG00000103534 ENSMUST00000193305 Gm37835 processed_pseudogene Interval_55171 chr14 78920883 78921587 + 0 NA intron (ENSMUSG00000058997.8, intron 4 of 12) protein_coding-intron (ENSMUSG00000058997.8, intron 4 of 44) 25992 ENSMUSG00000115090.1 ENSMUSG00000115090 ENSMUST00000228931 Gm49016 antisense Interval_7870 chr1 134298126 134299837 + 0 NA intron (ENSMUSG00000026458.13, intron 4 of 4) protein_coding-intron (ENSMUSG00000026458.13, intron 28 of 28) 5827 ENSMUSG00000026458.13 ENSMUSG00000026458 ENSMUST00000186553 Ppfia4 protein_coding Interval_64227 chr16 9350331 9352469 + 0 NA Intergenic Intergenic 192630 ENSMUSG00000116123.1 ENSMUSG00000116123 ENSMUST00000229655 Gm49451 lincRNA Interval_69260 chr16 91745790 91746966 + 0 NA intron (ENSMUSG00000022957.20, intron 1 of 5) protein_coding-intron (ENSMUSG00000022957.20, intron 1 of 28) -17781 ENSMUSG00000058240.14 ENSMUSG00000058240 ENSMUST00000123751 Cryzl1 protein_coding Interval_34087 chr11 120437031 120437866 + 0 NA intron (ENSMUSG00000039703.15, intron 1 of 15) protein_coding-intron (ENSMUSG00000039703.15, intron 1 of 16) -5223 ENSMUSG00000039691.10 ENSMUSG00000039691 ENSMUST00000143192 Tspan10 protein_coding Interval_85002 chr19 21174814 21175023 + 0 NA TTS (ENSMUSG00000118086.1) lincRNA-TTS (ENSMUSG00000118086.1) -4077 ENSMUSG00000118086.1 ENSMUSG00000118086 ENSMUST00000235897 AC106834.1 lincRNA Interval_114966 chr4 87767879 87769130 + 0 NA Intergenic Intergenic 37819 ENSMUSG00000028496.17 ENSMUSG00000028496 ENSMUST00000142454 Mllt3 protein_coding Interval_23495 chr11 22948677 22950518 + 0 NA intron (ENSMUSG00000051355.18, intron 1 of 1) protein_coding-intron (ENSMUSG00000051355.18, intron 3 of 3) 23262 ENSMUSG00000051355.18 ENSMUSG00000051355 ENSMUST00000093270 Commd1 protein_coding Interval_98834 chr2 155407636 155408019 + 0 NA exon (ENSMUSG00000038369.14, exon 10 of 14) protein_coding-exon (ENSMUSG00000038369.14, exon 10 of 14) -4266 ENSMUSG00000038369.14 ENSMUSG00000038369 ENSMUST00000134508 Ncoa6 protein_coding Interval_173436 chrX 93654729 93656387 + 0 NA intron (ENSMUSG00000035246.16, intron 1 of 7) protein_coding-intron (ENSMUSG00000035246.16, intron 1 of 7) 16944 ENSMUSG00000087255.2 ENSMUSG00000087255 ENSMUST00000121255 Gm6985 processed_pseudogene Interval_37648 chr12 70812586 70813522 + 0 NA intron (ENSMUSG00000113900.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000113900.1, intron 1 of 2) 12291 ENSMUSG00000113900.1 ENSMUSG00000113900 ENSMUST00000222338 Gm40437 lincRNA Interval_124474 chr5 48598980 48600323 + 0 NA promoter-TSS (ENSMUSG00000029088.16) protein_coding-promoter-TSS (ENSMUSG00000029088.16) 8762 ENSMUSG00000093502.2 ENSMUSG00000093502 ENSMUST00000176749 Gm20700 antisense Interval_121087 chr4 152799346 152799986 + 0 NA Intergenic Intergenic 102126 ENSMUSG00000073699.3 ENSMUSG00000073699 ENSMUST00000143133 Gm833 lincRNA Interval_145964 chr7 42703870 42704240 + 0 NA Intergenic Intergenic 2314 ENSMUSG00000091594.2 ENSMUSG00000091594 ENSMUST00000180131 Gm17067 protein_coding Interval_61679 chr15 83349669 83350739 + 0 NA promoter-TSS (ENSMUSG00000054277.8) protein_coding-promoter-TSS (ENSMUSG00000054277.8) 16807 ENSMUSG00000075511.9 ENSMUSG00000075511 ENSMUST00000177890 1700001L05Rik lincRNA Interval_161216 chr8 118749661 118750218 + 0 NA intron (ENSMUSG00000031841.19, intron 3 of 7) protein_coding-intron (ENSMUSG00000031841.19, intron 3 of 13) 23039 ENSMUSG00000087707.1 ENSMUSG00000087707 ENSMUST00000157082 Gm22999 snoRNA Interval_137574 chr6 73454008 73454610 + 0 NA intron (ENSMUSG00000107408.1, intron 2 of 4) lincRNA-intron (ENSMUSG00000107408.1, intron 2 of 4) 15310 ENSMUSG00000056197.6 ENSMUSG00000056197 ENSMUST00000204006 4931417E11Rik protein_coding Interval_17285 chr10 75576335 75577886 + 0 NA TTS (ENSMUSG00000006345.10) protein_coding-TTS (ENSMUSG00000006345.10) -7995 ENSMUSG00000006345.10 ENSMUSG00000006345 ENSMUST00000156487 Ggt1 protein_coding Interval_64208 chr16 9193309 9193599 + 0 NA Intergenic Intergenic 34684 ENSMUSG00000116123.1 ENSMUSG00000116123 ENSMUST00000229655 Gm49451 lincRNA Interval_136188 chr6 51875914 51876832 + 0 NA intron (ENSMUSG00000059182.7, intron 10 of 12) protein_coding-intron (ENSMUSG00000059182.7, intron 10 of 12) -4444 ENSMUSG00000059182.7 ENSMUSG00000059182 ENSMUST00000203313 Skap2 protein_coding Interval_22639 chr11 12434825 12437556 + 0 NA intron (ENSMUSG00000020173.17, intron 1 of 11) protein_coding-intron (ENSMUSG00000020173.17, intron 1 of 14) -24046 ENSMUSG00000020173.17 ENSMUSG00000020173 ENSMUST00000146067 Cobl protein_coding Interval_158336 chr8 81812428 81812678 + 0 NA TTS (ENSMUSG00000037940.17) protein_coding-TTS (ENSMUSG00000037940.17) -15145 ENSMUSG00000091998.2 ENSMUSG00000091998 ENSMUST00000166673 Gm17072 processed_pseudogene Interval_12832 chr10 5982556 5982814 + 0 NA Intergenic Intergenic -60299 ENSMUSG00000019775.17 ENSMUSG00000019775 ENSMUST00000019909 Rgs17 protein_coding Interval_55534 chr14 91125437 91126453 + 0 NA Intergenic Intergenic -17653 ENSMUSG00000088746.1 ENSMUSG00000088746 ENSMUST00000158121 Gm23225 snoRNA Interval_65863 chr16 29877512 29878025 + 0 NA Intergenic Intergenic -43040 ENSMUSG00000116891.1 ENSMUSG00000116891 ENSMUST00000232318 Gm32679 lincRNA Interval_126569 chr5 90332093 90332376 + 0 NA intron (ENSMUSG00000055204.15, intron 1 of 26) protein_coding-intron (ENSMUSG00000055204.15, intron 1 of 33) 33951 ENSMUSG00000055204.15 ENSMUSG00000055204 ENSMUST00000202226 Ankrd17 protein_coding Interval_131128 chr5 135306258 135307215 + 0 NA intron (ENSMUSG00000040013.11, intron 7 of 7) protein_coding-intron (ENSMUSG00000040013.11, intron 8 of 8) 42410 ENSMUSG00000106913.1 ENSMUSG00000106913 ENSMUST00000201947 9430007M09Rik TEC Interval_61278 chr15 80493659 80494795 + 0 NA intron (ENSMUSG00000050439.7, intron 5 of 6) protein_coding-intron (ENSMUSG00000050439.7, intron 4 of 5) 18335 ENSMUSG00000116345.1 ENSMUSG00000116345 ENSMUST00000230279 Gm19141 processed_pseudogene Interval_155744 chr8 36636782 36637517 + 0 NA intron (ENSMUSG00000031523.16, intron 5 of 17) protein_coding-intron (ENSMUSG00000031523.16, intron 1 of 13) 147958 ENSMUSG00000039620.17 ENSMUSG00000039620 ENSMUST00000125492 Trmt9b protein_coding Interval_69694 chr16 95614722 95616003 + 0 NA Intergenic Intergenic -84997 ENSMUSG00000040732.20 ENSMUSG00000040732 ENSMUST00000121809 Erg protein_coding Interval_113388 chr4 54116780 54116987 + 0 NA Intergenic Intergenic 46795 ENSMUSG00000086987.1 ENSMUSG00000086987 ENSMUST00000156311 Gm12484 lincRNA Interval_150403 chr7 110171042 110172088 + 0 NA Intergenic Intergenic 49519 ENSMUSG00000031016.9 ENSMUSG00000031016 ENSMUST00000033326 Wee1 protein_coding Interval_55778 chr14 99947129 99947405 + 0 NA intron (ENSMUSG00000072294.5, intron 5 of 7) protein_coding-intron (ENSMUSG00000072294.5, intron 4 of 6) -46876 ENSMUSG00000072294.5 ENSMUSG00000072294 ENSMUST00000226544 Klf12 protein_coding Interval_26839 chr11 60968012 60968845 + 0 NA Intergenic Intergenic 36374 ENSMUSG00000018932.9 ENSMUSG00000018932 ENSMUST00000137609 Map2k3 protein_coding Interval_7750 chr1 133422615 133424994 + 0 NA intron (ENSMUSG00000070643.11, intron 1 of 13) protein_coding-intron (ENSMUSG00000070643.11, intron 1 of 13) 573 ENSMUSG00000070643.11 ENSMUSG00000070643 ENSMUST00000126530 Sox13 protein_coding Interval_170389 chr9 107618561 107619483 + 0 NA TTS (ENSMUSG00000032562.13) protein_coding-TTS (ENSMUSG00000032562.13) 1926 ENSMUSG00000032562.13 ENSMUSG00000032562 ENSMUST00000193876 Gnai2 protein_coding Interval_88213 chr19 60724969 60725555 + 0 NA Intergenic Intergenic -30725 ENSMUSG00000072437.4 ENSMUSG00000072437 ENSMUST00000088237 Nanos1 protein_coding Interval_115554 chr4 100746175 100746548 + 0 NA Intergenic Intergenic 165083 ENSMUSG00000082601.1 ENSMUSG00000082601 ENSMUST00000118145 Gm12700 processed_pseudogene Interval_117895 chr4 126928690 126929327 + 0 NA intron (ENSMUSG00000042446.16, intron 1 of 1) protein_coding-intron (ENSMUSG00000042446.16, intron 2 of 29) 38891 ENSMUSG00000042446.16 ENSMUSG00000042446 ENSMUST00000123597 Zmym4 protein_coding Interval_55934 chr14 102953402 102954518 + 0 NA Intergenic Intergenic 28672 ENSMUSG00000092901.1 ENSMUSG00000092901 ENSMUST00000175160 Mir5130 miRNA Interval_1226 chr1 17489272 17490371 + 0 NA Intergenic Intergenic -30180 ENSMUSG00000089534.1 ENSMUSG00000089534 ENSMUST00000158909 Gm25166 snoRNA Interval_74686 chr17 55956075 55957457 + 0 NA exon (ENSMUSG00000003206.7, exon 5 of 5) protein_coding-exon (ENSMUSG00000003206.7, exon 5 of 5) -2333 ENSMUSG00000003208.9 ENSMUSG00000003208 ENSMUST00000233226 Yju2 protein_coding Interval_32604 chr11 109098865 109099170 + 0 NA Intergenic Intergenic -31927 ENSMUSG00000064691.1 ENSMUSG00000064691 ENSMUST00000082757 Gm24149 snRNA Interval_124969 chr5 62743684 62743900 + 0 NA intron (ENSMUSG00000037999.13, intron 2 of 32) protein_coding-intron (ENSMUSG00000037999.13, intron 2 of 32) -60231 ENSMUSG00000037999.13 ENSMUSG00000037999 ENSMUST00000159470 Arap2 protein_coding Interval_13324 chr10 14966683 14968218 + 0 NA Intergenic Intergenic -17220 ENSMUSG00000088730.1 ENSMUSG00000088730 ENSMUST00000158105 Gm23892 snoRNA Interval_58269 chr15 31530169 31531721 + 0 NA exon (ENSMUSG00000039100.10, exon 1 of 26) protein_coding-exon (ENSMUSG00000039100.10, exon 1 of 26) 108 ENSMUSG00000039100.10 ENSMUSG00000039100 ENSMUST00000228122 Marchf6 protein_coding Interval_76559 chr17 81072828 81074832 + 0 NA Intergenic Intergenic -8748 ENSMUSG00000024246.9 ENSMUSG00000024246 ENSMUST00000234801 Thumpd2 protein_coding Interval_40394 chr12 104605980 104606252 + 0 NA Intergenic Intergenic 86148 ENSMUSG00000112954.1 ENSMUSG00000112954 ENSMUST00000222329 Gm49732 lincRNA Interval_51046 chr14 21771301 21771715 + 0 NA intron (ENSMUSG00000021770.11, intron 1 of 5) protein_coding-intron (ENSMUSG00000021770.11, intron 1 of 5) 20960 ENSMUSG00000021770.11 ENSMUSG00000021770 ENSMUST00000142023 Samd8 protein_coding Interval_75575 chr17 68411350 68411790 + 0 NA intron (ENSMUSG00000041565.17, intron 4 of 6) protein_coding-intron (ENSMUSG00000041565.17, intron 4 of 19) -39760 ENSMUSG00000090224.1 ENSMUSG00000090224 ENSMUST00000159103 Gm15974 processed_pseudogene Interval_39006 chr12 84417035 84418063 + 0 NA exon (ENSMUSG00000098134.1, exon 1 of 1) protein_coding-exon (ENSMUSG00000098134.1, exon 1 of 1) 353 ENSMUSG00000098134.1 ENSMUSG00000098134 ENSMUST00000183146 Rnf113a2 protein_coding Interval_150081 chr7 105703014 105704343 + 0 NA exon (ENSMUSG00000030882.19, exon 26 of 44) protein_coding-exon (ENSMUSG00000030882.19, exon 26 of 44) -13111 ENSMUSG00000081911.1 ENSMUSG00000081911 ENSMUST00000118658 Mrps36-ps2 processed_pseudogene Interval_79477 chr18 32193196 32194000 + 0 NA intron (ENSMUSG00000024383.9, intron 2 of 6) protein_coding-intron (ENSMUSG00000024383.9, intron 2 of 16) 30505 ENSMUSG00000024383.9 ENSMUSG00000024383 ENSMUST00000096575 Map3k2 protein_coding Interval_33734 chr11 118164486 118165002 + 0 NA exon (ENSMUSG00000017132.17, exon 13 of 13) protein_coding-exon (ENSMUSG00000017132.17, exon 13 of 13) 16291 ENSMUSG00000088119.1 ENSMUSG00000088119 ENSMUST00000157494 Gm24060 snRNA Interval_54170 chr14 65900197 65900889 + 0 NA Intergenic Intergenic 53392 ENSMUSG00000034463.4 ENSMUSG00000034463 ENSMUST00000042046 Scara3 protein_coding Interval_17520 chr10 77475695 77475936 + 0 NA Intergenic Intergenic 17898 ENSMUSG00000112818.1 ENSMUSG00000112818 ENSMUST00000218522 Gm35920 lincRNA Interval_123671 chr5 34428817 34429044 + 0 NA intron (ENSMUSG00000037210.16, intron 5 of 20) protein_coding-intron (ENSMUSG00000037210.16, intron 1 of 16) -2289 ENSMUSG00000037210.16 ENSMUSG00000037210 ENSMUST00000181379 Fam193a protein_coding Interval_25161 chr11 44643129 44643608 + 0 NA TTS (ENSMUSG00000057098.14) protein_coding-TTS (ENSMUSG00000057098.14) 19308 ENSMUSG00000085784.1 ENSMUSG00000085784 ENSMUST00000130493 Gm12158 antisense Interval_97300 chr2 133320770 133320976 + 0 NA Intergenic Intergenic -10051 ENSMUSG00000098578.1 ENSMUSG00000098578 ENSMUST00000184570 Gm27449 snRNA Interval_165935 chr9 54786615 54787227 + 0 NA Intergenic Intergenic 22173 ENSMUSG00000032291.8 ENSMUSG00000032291 ENSMUST00000034830 Crabp1 protein_coding Interval_107135 chr3 103801728 103802273 + 0 NA TTS (ENSMUSG00000027845.15) protein_coding-TTS (ENSMUSG00000027845.15) -1129 ENSMUSG00000084997.7 ENSMUSG00000084997 ENSMUST00000145893 Gm15471 processed_transcript Interval_81675 chr18 63105788 63106134 + 0 NA intron (ENSMUSG00000041482.17, intron 16 of 50) protein_coding-intron (ENSMUSG00000041482.17, intron 16 of 53) 62511 ENSMUSG00000118039.1 ENSMUSG00000118039 ENSMUST00000237782 Gm50171 TEC Interval_37124 chr12 58639221 58639564 + 0 NA Intergenic Intergenic -124514 ENSMUSG00000112487.1 ENSMUSG00000112487 ENSMUST00000219517 Gm18873 processed_pseudogene Interval_29953 chr11 88337636 88337856 + 0 NA Intergenic Intergenic 2086 ENSMUSG00000081304.1 ENSMUSG00000081304 ENSMUST00000117358 Gm11509 processed_pseudogene Interval_160802 chr8 112450154 112450430 + 0 NA Intergenic Intergenic 119283 ENSMUSG00000098075.1 ENSMUSG00000098075 ENSMUST00000182027 Gm26994 antisense Interval_143460 chr7 6973265 6974491 + 0 NA intron (ENSMUSG00000108043.2, intron 3 of 6) antisense-intron (ENSMUSG00000108043.2, intron 3 of 6) 1586 ENSMUSG00000108043.2 ENSMUSG00000108043 ENSMUST00000203351 Zim3 antisense Interval_92144 chr2 54084067 54086229 + 0 NA exon (ENSMUSG00000075334.2, exon 1 of 1) protein_coding-exon (ENSMUSG00000075334.2, exon 1 of 1) 404 ENSMUSG00000075334.2 ENSMUSG00000075334 ENSMUST00000100089 Rprm protein_coding Interval_76005 chr17 74304113 74304572 + 0 NA intron (ENSMUSG00000024067.14, intron 3 of 3) protein_coding-intron (ENSMUSG00000024067.14, intron 4 of 4) -9479 ENSMUSG00000058704.9 ENSMUSG00000058704 ENSMUST00000232861 Memo1 protein_coding Interval_103443 chr3 41593920 41594244 + 0 NA TTS (ENSMUSG00000025764.14) protein_coding-TTS (ENSMUSG00000025764.14) -30384 ENSMUSG00000103843.1 ENSMUSG00000103843 ENSMUST00000192060 Gm31266 antisense Interval_10114 chr1 165882242 165882671 + 0 NA intron (ENSMUSG00000026565.18, intron 13 of 16) protein_coding-intron (ENSMUSG00000026565.18, intron 12 of 14) -2296 ENSMUSG00000026565.18 ENSMUSG00000026565 ENSMUST00000176800 Pou2f1 protein_coding Interval_56131 chr14 106368185 106368452 + 0 NA Intergenic Intergenic -100384 ENSMUSG00000115754.1 ENSMUSG00000115754 ENSMUST00000226755 Gm48972 lincRNA Interval_77663 chr17 93826610 93827251 + 0 NA Intergenic Intergenic -145896 ENSMUSG00000117537.1 ENSMUSG00000117537 ENSMUST00000234228 Gm50003 processed_pseudogene Interval_173021 chrX 64275588 64277470 + 0 NA promoter-TSS (ENSMUSG00000046699.14) protein_coding-promoter-TSS (ENSMUSG00000046699.14) -707 ENSMUSG00000046699.14 ENSMUSG00000046699 ENSMUST00000156121 Slitrk4 protein_coding Interval_54810 chr14 75330282 75331084 + 0 NA exon (ENSMUSG00000022000.11, exon 14 of 19) protein_coding-exon (ENSMUSG00000022000.11, exon 14 of 19) -7389 ENSMUSG00000022000.11 ENSMUSG00000022000 ENSMUST00000228470 Zc3h13 protein_coding Interval_7492 chr1 131820117 131820974 + 0 NA exon (ENSMUSG00000042251.12, exon 13 of 13) protein_coding-exon (ENSMUSG00000042251.12, exon 13 of 13) 8415 ENSMUSG00000042251.12 ENSMUSG00000042251 ENSMUST00000132450 Pm20d1 protein_coding Interval_54830 chr14 75649681 75650025 + 0 NA intron (ENSMUSG00000022002.2, intron 1 of 4) protein_coding-intron (ENSMUSG00000022002.2, intron 1 of 4) 1676 ENSMUSG00000064394.1 ENSMUSG00000064394 ENSMUST00000082460 Gm23622 snRNA Interval_44677 chr13 47082336 47082578 + 0 NA intron (ENSMUSG00000038080.17, intron 10 of 10) protein_coding-intron (ENSMUSG00000038080.17, intron 20 of 20) 15880 ENSMUSG00000021377.15 ENSMUSG00000021377 ENSMUST00000150652 Dek protein_coding Interval_83349 chr18 84507974 84508334 + 0 NA intron (ENSMUSG00000048410.17, intron 2 of 2) protein_coding-intron (ENSMUSG00000048410.17, intron 2 of 2) -73219 ENSMUSG00000048410.17 ENSMUSG00000048410 ENSMUST00000182297 Zfp407 protein_coding Interval_99673 chr2 164107307 164107649 + 0 NA intron (ENSMUSG00000018209.15, intron 2 of 2) protein_coding-intron (ENSMUSG00000018209.15, intron 9 of 10) 25881 ENSMUSG00000018209.15 ENSMUSG00000018209 ENSMUST00000088291 Stk4 protein_coding Interval_15493 chr10 49118427 49118729 + 0 NA intron (ENSMUSG00000056073.16, intron 4 of 7) protein_coding-intron (ENSMUSG00000056073.16, intron 14 of 15) -14647 ENSMUSG00000056073.16 ENSMUSG00000056073 ENSMUST00000220263 Grik2 protein_coding Interval_12776 chr10 5243642 5243990 + 0 NA intron (ENSMUSG00000096054.3, intron 71 of 145) protein_coding-intron (ENSMUSG00000096054.3, intron 71 of 145) -58290 ENSMUSG00000096054.3 ENSMUSG00000096054 ENSMUST00000214945 Syne1 protein_coding Interval_163910 chr9 28261034 28261844 + 0 NA intron (ENSMUSG00000062257.13, intron 1 of 7) protein_coding-intron (ENSMUSG00000062257.13, intron 1 of 7) -31309 ENSMUSG00000106021.1 ENSMUSG00000106021 ENSMUST00000199274 Gm44316 miRNA Interval_48891 chr13 104472866 104473112 + 0 NA intron (ENSMUSG00000046169.10, intron 22 of 24) protein_coding-intron (ENSMUSG00000046169.10, intron 22 of 24) 185154 ENSMUSG00000046169.10 ENSMUSG00000046169 ENSMUST00000224504 Adamts6 protein_coding Interval_154002 chr8 11788445 11788798 + 0 NA intron (ENSMUSG00000031511.16, intron 3 of 4) protein_coding-intron (ENSMUSG00000031511.16, intron 5 of 17) -8833 ENSMUSG00000031511.16 ENSMUSG00000031511 ENSMUST00000151225 Arhgef7 protein_coding Interval_136459 chr6 54667558 54668085 + 0 NA Intergenic Intergenic -13803 ENSMUSG00000038065.13 ENSMUSG00000038065 ENSMUST00000185518 Mturn protein_coding Interval_114073 chr4 63118742 63119515 + 0 NA intron (ENSMUSG00000028358.15, intron 12 of 14) protein_coding-intron (ENSMUSG00000028358.15, intron 12 of 14) -1272 ENSMUSG00000028358.15 ENSMUSG00000028358 ENSMUST00000151324 Zfp618 protein_coding Interval_14490 chr10 34288992 34289528 + 0 NA intron (ENSMUSG00000039480.14, intron 2 of 2) protein_coding-intron (ENSMUSG00000039480.14, intron 2 of 2) -4298 ENSMUSG00000110791.1 ENSMUSG00000110791 ENSMUST00000213462 Gm47508 TEC Interval_6620 chr1 118351045 118351302 + 0 NA Intergenic Intergenic -6139 ENSMUSG00000099936.1 ENSMUSG00000099936 ENSMUST00000190194 Gm28867 lincRNA Interval_111304 chr4 18177781 18178001 + 0 NA Intergenic Intergenic -15640 ENSMUSG00000083150.1 ENSMUSG00000083150 ENSMUST00000120806 Gm11852 processed_pseudogene Interval_83741 chr19 4317626 4317936 + 0 NA TTS (ENSMUSG00000054611.17) protein_coding-TTS (ENSMUSG00000054611.17) 10630 ENSMUSG00000054611.17 ENSMUSG00000054611 ENSMUST00000176495 Kdm2a protein_coding Interval_122835 chr5 25943652 25946071 + 0 NA Intergenic Intergenic -2480 ENSMUSG00000104824.1 ENSMUSG00000104824 ENSMUST00000196214 Gm21663 protein_coding Interval_27636 chr11 69196790 69197916 + 0 NA promoter-TSS (ENSMUSG00000020891.11) protein_coding-promoter-TSS (ENSMUSG00000020891.11) 31 ENSMUSG00000020891.11 ENSMUSG00000020891 ENSMUST00000156157 Alox8 protein_coding Interval_122133 chr5 17909599 17909932 + 0 NA Intergenic Intergenic -52784 ENSMUSG00000028777.8 ENSMUSG00000028777 ENSMUST00000030561 Gnat3 protein_coding Interval_95634 chr2 113216243 113217498 + 0 NA promoter-TSS (ENSMUSG00000057378.15) protein_coding-promoter-TSS (ENSMUSG00000057378.15) -68862 ENSMUSG00000041255.2 ENSMUSG00000041255 ENSMUST00000040856 Tmco5b protein_coding Interval_71996 chr17 27494552 27494888 + 0 NA intron (ENSMUSG00000063239.17, intron 1 of 8) protein_coding-intron (ENSMUSG00000063239.17, intron 2 of 10) 19006 ENSMUSG00000063239.17 ENSMUSG00000063239 ENSMUST00000147865 Grm4 protein_coding Interval_33264 chr11 115544258 115544981 + 0 NA Intergenic Intergenic -8343 ENSMUSG00000020738.16 ENSMUSG00000020738 ENSMUST00000050672 Sumo2 protein_coding Interval_22635 chr11 12417069 12417275 + 0 NA intron (ENSMUSG00000020173.17, intron 1 of 11) protein_coding-intron (ENSMUSG00000020173.17, intron 1 of 14) -5028 ENSMUSG00000020173.17 ENSMUSG00000020173 ENSMUST00000146067 Cobl protein_coding Interval_141704 chr6 133877370 133877636 + 0 NA Intergenic Intergenic 13449 ENSMUSG00000107890.1 ENSMUSG00000107890 ENSMUST00000203388 Gm43968 processed_pseudogene Interval_105593 chr3 87974150 87974970 + 0 NA intron (ENSMUSG00000004891.16, intron 2 of 4) protein_coding-intron (ENSMUSG00000004891.16, intron 2 of 3) 3431 ENSMUSG00000004891.16 ENSMUSG00000004891 ENSMUST00000160694 Nes protein_coding Interval_104550 chr3 67607920 67609175 + 0 NA promoter-TSS (ENSMUSG00000103206.1) processed_pseudogene-promoter-TSS (ENSMUSG00000103206.1) -766 ENSMUSG00000103206.1 ENSMUSG00000103206 ENSMUST00000194852 Gm8515 processed_pseudogene Interval_169768 chr9 101079875 101080198 + 0 NA intron (ENSMUSG00000066415.4, intron 2 of 2) protein_coding-intron (ENSMUSG00000066415.4, intron 1 of 1) 5935 ENSMUSG00000066415.4 ENSMUSG00000066415 ENSMUST00000085177 Msl2 protein_coding Interval_22597 chr11 12100538 12101058 + 0 NA Intergenic Intergenic 27200 ENSMUSG00000083527.1 ENSMUSG00000083527 ENSMUST00000121727 Gm12001 processed_pseudogene Interval_33879 chr11 119159543 119160119 + 0 NA intron (ENSMUSG00000039976.4, intron 3 of 11) protein_coding-intron (ENSMUSG00000039976.4, intron 3 of 11) -5694 ENSMUSG00000098704.1 ENSMUSG00000098704 ENSMUST00000183965 Mir6934 miRNA Interval_172428 chrX 19315142 19315423 + 0 NA Intergenic Intergenic -39719 ENSMUSG00000077277.1 ENSMUSG00000077277 ENSMUST00000104089 Gm22783 snRNA Interval_166879 chr9 63612603 63613395 + 0 NA intron (ENSMUSG00000037257.8, intron 1 of 9) protein_coding-intron (ENSMUSG00000037257.8, intron 1 of 9) -3989 ENSMUSG00000037257.8 ENSMUSG00000037257 ENSMUST00000213702 Aagab protein_coding Interval_152828 chr7 138438702 138440690 + 0 NA Intergenic Intergenic 25919 ENSMUSG00000110354.1 ENSMUSG00000110354 ENSMUST00000211580 Gm45686 lincRNA Interval_9627 chr1 160416110 160416482 + 0 NA intron (ENSMUSG00000026721.16, intron 1 of 6) protein_coding-intron (ENSMUSG00000026721.16, intron 17 of 20) 25608 ENSMUSG00000026721.16 ENSMUSG00000026721 ENSMUST00000193810 Rabgap1l protein_coding Interval_140499 chr6 118845984 118846651 + 0 NA intron (ENSMUSG00000051331.16, intron 3 of 47) protein_coding-intron (ENSMUSG00000051331.16, intron 3 of 46) 11417 ENSMUSG00000089115.1 ENSMUSG00000089115 ENSMUST00000158490 Gm25905 snRNA Interval_17450 chr10 76882254 76884140 + 0 NA intron (ENSMUSG00000001120.15, intron 2 of 18) protein_coding-intron (ENSMUSG00000001120.15, intron 2 of 15) -94775 ENSMUSG00000001120.15 ENSMUSG00000001120 ENSMUST00000165571 Pcbp3 protein_coding Interval_103303 chr3 38321424 38321790 + 0 NA Intergenic Intergenic -47791 ENSMUSG00000106008.1 ENSMUSG00000106008 ENSMUST00000196616 Gm42920 lincRNA Interval_62520 chr15 94183598 94184603 + 0 NA Intergenic Intergenic -219392 ENSMUSG00000115965.1 ENSMUSG00000115965 ENSMUST00000229885 Gm30564 lincRNA Interval_147198 chr7 64365559 64366131 + 0 NA intron (ENSMUSG00000033458.17, intron 4 of 6) protein_coding-intron (ENSMUSG00000033458.17, intron 5 of 13) 7528 ENSMUSG00000033458.17 ENSMUSG00000033458 ENSMUST00000206730 Fan1 protein_coding Interval_135670 chr6 42853352 42853796 + 0 NA Intergenic Intergenic 19190 ENSMUSG00000049168.9 ENSMUSG00000049168 ENSMUST00000050729 Olfr449 protein_coding Interval_116013 chr4 106976893 106977160 + 0 NA intron (ENSMUSG00000061887.14, intron 1 of 4) protein_coding-intron (ENSMUSG00000061887.14, intron 4 of 17) 45473 ENSMUSG00000085581.1 ENSMUSG00000085581 ENSMUST00000129617 Gm12786 antisense Interval_76569 chr17 81193503 81193793 + 0 NA Intergenic Intergenic 53090 ENSMUSG00000117496.1 ENSMUSG00000117496 ENSMUST00000234904 Gm50042 processed_pseudogene Interval_103159 chr3 36093016 36093416 + 0 NA TTS (ENSMUSG00000027710.14) protein_coding-TTS (ENSMUSG00000027710.14) 3379 ENSMUSG00000027710.14 ENSMUSG00000027710 ENSMUST00000199193 Acad9 protein_coding Interval_61145 chr15 79485306 79485575 + 0 NA exon (ENSMUSG00000044216.7, exon 2 of 2) protein_coding-exon (ENSMUSG00000044216.7, exon 2 of 2) -2766 ENSMUSG00000116081.1 ENSMUSG00000116081 ENSMUST00000229365 Gm49593 TEC Interval_165861 chr9 53889827 53890620 + 0 NA Intergenic Intergenic 6139 ENSMUSG00000059830.3 ENSMUSG00000059830 ENSMUST00000077997 Gm16380 processed_pseudogene Interval_64924 chr16 17254122 17254553 + 0 NA intron (ENSMUSG00000116743.1, intron 1 of 3) protein_coding-intron (ENSMUSG00000050240.16, intron 1 of 2) 20673 ENSMUSG00000050240.16 ENSMUSG00000050240 ENSMUST00000232082 Hic2 protein_coding Interval_168422 chr9 80180759 80181333 + 0 NA intron (ENSMUSG00000033577.18, intron 1 of 35) protein_coding-intron (ENSMUSG00000033577.18, intron 1 of 32) 15819 ENSMUSG00000033577.18 ENSMUSG00000033577 ENSMUST00000138650 Myo6 protein_coding Interval_104928 chr3 79071463 79071892 + 0 NA intron (ENSMUSG00000062232.14, intron 26 of 29) protein_coding-intron (ENSMUSG00000062232.14, intron 20 of 23) 91755 ENSMUSG00000077487.1 ENSMUSG00000077487 ENSMUST00000104299 Gm23440 snoRNA Interval_155012 chr8 25677339 25677842 + 0 NA TTS (ENSMUSG00000054823.16) protein_coding-TTS (ENSMUSG00000054823.16) -1360 ENSMUSG00000088176.1 ENSMUSG00000088176 ENSMUST00000157551 Gm23094 misc_RNA Interval_158614 chr8 84761034 84761438 + 0 NA intron (ENSMUSG00000001911.16, intron 2 of 9) protein_coding-intron (ENSMUSG00000001911.16, intron 2 of 8) 38229 ENSMUSG00000074203.4 ENSMUSG00000074203 ENSMUST00000098571 G430095P16Rik protein_coding Interval_155439 chr8 33613617 33614519 + 0 NA intron (ENSMUSG00000009630.10, intron 3 of 6) protein_coding-intron (ENSMUSG00000009630.10, intron 3 of 6) 14443 ENSMUSG00000009630.10 ENSMUSG00000009630 ENSMUST00000009774 Ppp2cb protein_coding Interval_96681 chr2 127108936 127109800 + 0 NA intron (ENSMUSG00000034906.15, intron 12 of 16) protein_coding-intron (ENSMUSG00000034906.15, intron 13 of 17) 12682 ENSMUSG00000034906.15 ENSMUSG00000034906 ENSMUST00000156625 Ncaph protein_coding Interval_53061 chr14 54117566 54118293 + 0 NA TTS (ENSMUSG00000089469.1) misc_RNA-TTS (ENSMUSG00000089469.1) 875 ENSMUSG00000089469.1 ENSMUSG00000089469 ENSMUST00000158844 Gm23704 misc_RNA Interval_155104 chr8 26586625 26588002 + 0 NA Intergenic Intergenic -7511 ENSMUSG00000110222.1 ENSMUSG00000110222 ENSMUST00000210258 Gm39149 lincRNA Interval_32382 chr11 107251543 107251857 + 0 NA intron (ENSMUSG00000040430.18, intron 6 of 7) protein_coding-intron (ENSMUSG00000040430.18, intron 5 of 7) 60606 ENSMUSG00000081360.1 ENSMUSG00000081360 ENSMUST00000119942 Gm11718 processed_pseudogene Interval_131897 chr5 140662308 140664188 + 0 NA TTS (ENSMUSG00000036555.14) protein_coding-TTS (ENSMUSG00000036555.14) -14251 ENSMUSG00000036565.7 ENSMUSG00000036565 ENSMUST00000200302 Ttyh3 protein_coding Interval_6637 chr1 118457109 118457346 + 0 NA intron (ENSMUSG00000064302.13, intron 2 of 31) protein_coding-intron (ENSMUSG00000064302.13, intron 2 of 39) 1520 ENSMUSG00000107722.1 ENSMUSG00000107722 ENSMUST00000204125 2900060B14Rik antisense Interval_114558 chr4 82480678 82480884 + 0 NA intron (ENSMUSG00000008575.17, intron 2 of 4) protein_coding-intron (ENSMUSG00000008575.17, intron 2 of 11) -27235 ENSMUSG00000087413.1 ENSMUSG00000087413 ENSMUST00000139835 Gm11266 antisense Interval_167346 chr9 67632185 67634530 + 0 NA Intergenic Intergenic -66824 ENSMUSG00000111819.1 ENSMUSG00000111819 ENSMUST00000216655 Gm47110 processed_pseudogene Interval_21353 chr10 128125084 128125506 + 0 NA exon (ENSMUSG00000040054.17, exon 26 of 30) protein_coding-exon (ENSMUSG00000040054.17, exon 26 of 30) 33713 ENSMUSG00000040054.17 ENSMUSG00000040054 ENSMUST00000219980 Baz2a protein_coding Interval_135292 chr6 38103808 38103981 + 0 NA intron (ENSMUSG00000038600.12, intron 1 of 21) protein_coding-intron (ENSMUSG00000038600.12, intron 1 of 20) -5361 ENSMUSG00000029829.4 ENSMUSG00000029829 ENSMUST00000031851 Tmem213 protein_coding Interval_65865 chr16 29893993 29894205 + 0 NA Intergenic Intergenic 52655 ENSMUSG00000097313.2 ENSMUSG00000097313 ENSMUST00000232356 Gm26569 processed_transcript Interval_58248 chr15 31344218 31345582 + 0 NA intron (ENSMUSG00000022237.17, intron 1 of 3) protein_coding-intron (ENSMUSG00000022237.17, intron 1 of 2) -23462 ENSMUSG00000115406.1 ENSMUSG00000115406 ENSMUST00000227460 Gm49300 TEC Interval_105036 chr3 79958048 79958468 + 0 NA Intergenic Intergenic -71452 ENSMUSG00000102191.1 ENSMUSG00000102191 ENSMUST00000195082 Gm36569 antisense Interval_74774 chr17 56474988 56476729 + 0 NA intron (ENSMUSG00000013236.17, intron 1 of 6) protein_coding-intron (ENSMUSG00000013236.17, intron 1 of 32) 36573 ENSMUSG00000044526.3 ENSMUSG00000044526 ENSMUST00000052211 Znrf4 protein_coding Interval_101978 chr3 14221535 14222456 + 0 NA Intergenic Intergenic 45444 ENSMUSG00000089231.1 ENSMUSG00000089231 ENSMUST00000158606 Gm23112 snoRNA Interval_93763 chr2 76688189 76689023 + 0 NA intron (ENSMUSG00000002733.8, intron 5 of 7) protein_coding-intron (ENSMUSG00000002733.8, intron 5 of 7) -1247 ENSMUSG00000002733.8 ENSMUSG00000002733 ENSMUST00000125119 Plekha3 protein_coding Interval_86136 chr19 36963861 36964769 + 0 NA intron (ENSMUSG00000040565.8, intron 2 of 15) protein_coding-intron (ENSMUSG00000040565.8, intron 8 of 37) 4130 ENSMUSG00000040565.8 ENSMUSG00000040565 ENSMUST00000236343 Btaf1 protein_coding Interval_151314 chr7 120932751 120933225 + 0 NA intron (ENSMUSG00000030880.14, intron 8 of 19) protein_coding-intron (ENSMUSG00000030880.14, intron 9 of 20) -1842 ENSMUSG00000030880.14 ENSMUSG00000030880 ENSMUST00000209014 Polr3e protein_coding Interval_143253 chr7 4776476 4777788 + 0 NA intron (ENSMUSG00000004371.15, intron 1 of 4) protein_coding-intron (ENSMUSG00000004371.15, intron 1 of 4) 5727 ENSMUSG00000004371.15 ENSMUSG00000004371 ENSMUST00000234277 Il11 protein_coding Interval_142397 chr6 141495137 141496589 + 0 NA intron (ENSMUSG00000041741.10, intron 15 of 15) protein_coding-intron (ENSMUSG00000041741.10, intron 15 of 15) -28536 ENSMUSG00000030235.17 ENSMUSG00000030235 ENSMUST00000203755 Slco1c1 protein_coding Interval_33417 chr11 116445759 116446826 + 0 NA intron (ENSMUSG00000070331.14, intron 13 of 19) protein_coding-intron (ENSMUSG00000070331.14, intron 7 of 13) 11783 ENSMUSG00000050628.6 ENSMUSG00000050628 ENSMUST00000144310 Ubald2 protein_coding Interval_118341 chr4 130775152 130776058 + 0 NA promoter-TSS (ENSMUSG00000095119.1) snoRNA-promoter-TSS (ENSMUSG00000095119.1) -136 ENSMUSG00000095119.1 ENSMUSG00000095119 ENSMUST00000083856 Gm23711 snoRNA Interval_68932 chr16 89293960 89294427 + 0 NA Intergenic Intergenic 88332 ENSMUSG00000091039.2 ENSMUSG00000091039 ENSMUST00000169954 Krtap20-2 protein_coding Interval_158180 chr8 79584845 79585498 + 0 NA Intergenic Intergenic -34423 ENSMUSG00000097975.1 ENSMUSG00000097975 ENSMUST00000182695 Gm8079 processed_pseudogene Interval_98926 chr2 156071219 156071549 + 0 NA TTS (ENSMUSG00000074643.12) protein_coding-TTS (ENSMUSG00000074643.12) 4649 ENSMUSG00000038180.11 ENSMUSG00000038180 ENSMUST00000149139 Spag4 protein_coding Interval_119238 chr4 136382551 136383633 + 0 NA Intergenic Intergenic -33651 ENSMUSG00000098155.1 ENSMUSG00000098155 ENSMUST00000183225 Gm27022 lincRNA Interval_111600 chr4 24403325 24403623 + 0 NA Intergenic Intergenic -20003 ENSMUSG00000081148.1 ENSMUSG00000081148 ENSMUST00000121241 Gm11891 processed_pseudogene Interval_15800 chr10 57049483 57049776 + 0 NA Intergenic Intergenic -67397 ENSMUSG00000112327.1 ENSMUSG00000112327 ENSMUST00000220080 Gm36827 lincRNA Interval_113819 chr4 59048791 59049444 + 0 NA intron (ENSMUSG00000038598.9, intron 25 of 27) protein_coding-intron (ENSMUSG00000038598.9, intron 25 of 27) 13345 ENSMUSG00000038607.12 ENSMUSG00000038607 ENSMUST00000126507 Gng10 protein_coding Interval_161377 chr8 120071247 120072156 + 0 NA intron (ENSMUSG00000092329.1, intron 1 of 15) protein_coding-intron (ENSMUSG00000092329.1, intron 1 of 15) 15134 ENSMUSG00000031823.14 ENSMUSG00000031823 ENSMUST00000123186 Zdhhc7 protein_coding Interval_32613 chr11 109162269 109162790 + 0 NA Intergenic Intergenic -2335 ENSMUSG00000081524.3 ENSMUSG00000081524 ENSMUST00000120913 Gm11658 processed_pseudogene Interval_20837 chr10 121412648 121413187 + 0 NA exon (ENSMUSG00000025795.8, exon 5 of 5) protein_coding-exon (ENSMUSG00000025795.8, exon 5 of 5) 12204 ENSMUSG00000112209.1 ENSMUSG00000112209 ENSMUST00000218038 Gm18730 processed_pseudogene Interval_109951 chr3 152134192 152134378 + 0 NA intron (ENSMUSG00000039131.15, intron 2 of 2) protein_coding-intron (ENSMUSG00000039131.15, intron 2 of 5) 12503 ENSMUSG00000039131.15 ENSMUSG00000039131 ENSMUST00000133102 Gipc2 protein_coding Interval_169728 chr9 100738164 100738458 + 0 NA TTS (ENSMUSG00000037286.15) protein_coding-TTS (ENSMUSG00000037286.15) 35098 ENSMUSG00000104272.1 ENSMUSG00000104272 ENSMUST00000195122 Gm38297 TEC Interval_49167 chr13 108986711 108987038 + 0 NA intron (ENSMUSG00000021699.17, intron 1 of 15) protein_coding-intron (ENSMUSG00000021699.17, intron 2 of 16) 126708 ENSMUSG00000021699.17 ENSMUSG00000021699 ENSMUST00000155459 Pde4d protein_coding Interval_148749 chr7 85132919 85133228 + 0 NA exon (ENSMUSG00000095664.2, exon 6 of 6) protein_coding-exon (ENSMUSG00000095664.2, exon 6 of 6) 22925 ENSMUSG00000095664.2 ENSMUSG00000095664 ENSMUST00000233656 Vmn2r67 protein_coding Interval_143768 chr7 16199610 16199960 + 0 NA exon (ENSMUSG00000006019.15, exon 14 of 17) protein_coding-exon (ENSMUSG00000006019.15, exon 14 of 17) 22039 ENSMUSG00000041420.18 ENSMUSG00000041420 ENSMUST00000176714 Meis3 protein_coding Interval_95788 chr2 116292236 116292647 + 0 NA Intergenic Intergenic -216345 ENSMUSG00000103562.1 ENSMUSG00000103562 ENSMUST00000195368 2810405F15Rik TEC Interval_91367 chr2 38321288 38321507 + 0 NA Intergenic Intergenic 26919 ENSMUSG00000098383.1 ENSMUSG00000098383 ENSMUST00000184325 Gm27197 antisense Interval_117388 chr4 123393931 123395013 + 0 NA intron (ENSMUSG00000028649.21, intron 59 of 93) protein_coding-intron (ENSMUSG00000028649.21, intron 58 of 92) -41145 ENSMUSG00000081528.1 ENSMUSG00000081528 ENSMUST00000121747 Gm12924 processed_pseudogene Interval_121822 chr5 8487938 8489941 + 0 NA Intergenic Intergenic 25913 ENSMUSG00000105740.1 ENSMUSG00000105740 ENSMUST00000200378 Gm42685 TEC Interval_124700 chr5 53422122 53422317 + 0 NA Intergenic Intergenic 3646 ENSMUSG00000088646.1 ENSMUSG00000088646 ENSMUST00000158021 Gm26486 rRNA Interval_168145 chr9 77496544 77498548 + 0 NA intron (ENSMUSG00000032352.16, intron 1 of 1) protein_coding-intron (ENSMUSG00000032352.16, intron 2 of 13) 47302 ENSMUSG00000032352.16 ENSMUSG00000032352 ENSMUST00000183980 Lrrc1 protein_coding Interval_167947 chr9 74860581 74863979 + 0 NA exon (ENSMUSG00000043013.10, exon 1 of 2) protein_coding-exon (ENSMUSG00000043013.10, exon 1 of 2) -4204 ENSMUSG00000043013.10 ENSMUSG00000043013 ENSMUST00000160499 Onecut1 protein_coding Interval_34440 chr12 4178170 4180804 + 0 NA intron (ENSMUSG00000020654.15, intron 3 of 20) protein_coding-intron (ENSMUSG00000020654.15, intron 2 of 20) 37019 ENSMUSG00000020652.17 ENSMUSG00000020652 ENSMUST00000126017 Cenpo protein_coding Interval_59269 chr15 50444019 50445159 + 0 NA Intergenic Intergenic 157691 ENSMUSG00000115478.1 ENSMUSG00000115478 ENSMUST00000227182 Gm49198 lincRNA Interval_21652 chr11 3483784 3484022 + 0 NA Intergenic Intergenic -5087 ENSMUSG00000034579.17 ENSMUSG00000034579 ENSMUST00000151860 Pla2g3 protein_coding Interval_164645 chr9 40284012 40284456 + 0 NA intron (ENSMUSG00000049281.16, intron 1 of 2) protein_coding-intron (ENSMUSG00000049281.16, intron 5 of 6) 1781 ENSMUSG00000049281.16 ENSMUSG00000049281 ENSMUST00000216398 Scn3b protein_coding Interval_26902 chr11 61449162 61450065 + 0 NA exon (ENSMUSG00000010086.17, exon 15 of 15) protein_coding-exon (ENSMUSG00000010086.17, exon 15 of 15) 4518 ENSMUSG00000010086.17 ENSMUSG00000010086 ENSMUST00000130648 Rnf112 protein_coding Interval_146966 chr7 56399287 56399807 + 0 NA intron (ENSMUSG00000030450.11, intron 18 of 22) protein_coding-intron (ENSMUSG00000030450.11, intron 19 of 23) -156397 ENSMUSG00000108773.1 ENSMUSG00000108773 ENSMUST00000206278 Gm44506 antisense Interval_71065 chr17 17601987 17602199 + 0 NA intron (ENSMUSG00000023845.7, intron 1 of 10) protein_coding-intron (ENSMUSG00000023845.7, intron 1 of 17) -7317 ENSMUSG00000116796.1 ENSMUSG00000116796 ENSMUST00000232626 Gm49784 TEC Interval_67079 chr16 42717426 42717748 + 0 NA Intergenic Intergenic 53661 ENSMUSG00000116679.1 ENSMUSG00000116679 ENSMUST00000232064 Gm49739 processed_pseudogene Interval_78091 chr18 7897019 7897220 + 0 NA intron (ENSMUSG00000024283.15, intron 3 of 13) protein_coding-intron (ENSMUSG00000024283.15, intron 3 of 13) 27618 ENSMUSG00000024283.15 ENSMUSG00000024283 ENSMUST00000167542 Wac protein_coding Interval_36854 chr12 54686535 54687981 + 0 NA intron (ENSMUSG00000054302.15, intron 3 of 6) protein_coding-intron (ENSMUSG00000054302.15, intron 2 of 2) -7449 ENSMUSG00000113392.1 ENSMUSG00000113392 ENSMUST00000223274 Gm36262 processed_pseudogene Interval_121257 chr4 154449326 154449748 + 0 NA intron (ENSMUSG00000039410.16, intron 3 of 15) protein_coding-intron (ENSMUSG00000039410.16, intron 3 of 16) -100745 ENSMUSG00000086565.1 ENSMUSG00000086565 ENSMUST00000143888 Gm13133 antisense Interval_116308 chr4 109574276 109574962 + 0 NA intron (ENSMUSG00000087641.1, intron 1 of 2) processed_transcript-intron (ENSMUSG00000087641.1, intron 1 of 2) 5405 ENSMUSG00000087641.1 ENSMUSG00000087641 ENSMUST00000125237 Gm12811 processed_transcript Interval_87412 chr19 49263650 49264128 + 0 NA Intergenic Intergenic 173216 ENSMUSG00000118111.1 ENSMUSG00000118111 ENSMUST00000236912 Gm50442 lincRNA Interval_42825 chr13 20057838 20058263 + 0 NA Intergenic Intergenic -62246 ENSMUSG00000050243.6 ENSMUSG00000050243 ENSMUST00000091762 Gm5446 processed_pseudogene Interval_131265 chr5 136069219 136069780 + 0 NA Intergenic Intergenic 12232 ENSMUSG00000006143.12 ENSMUSG00000006143 ENSMUST00000122979 Upk3bl protein_coding Interval_39452 chr12 87514119 87514346 + 0 NA promoter-TSS (ENSMUSG00000079034.2) protein_coding-promoter-TSS (ENSMUSG00000079034.2) -84 ENSMUSG00000079034.2 ENSMUSG00000079034 ENSMUST00000110152 Gm8300 protein_coding Interval_117284 chr4 121402389 121402774 + 0 NA Intergenic Intergenic 9589 ENSMUSG00000081667.1 ENSMUSG00000081667 ENSMUST00000117867 Gm12883 unprocessed_pseudogene Interval_96231 chr2 120747719 120748855 + 0 NA intron (ENSMUSG00000027284.16, intron 13 of 40) protein_coding-intron (ENSMUSG00000090100.7, intron 14 of 15) -19649 ENSMUSG00000027284.16 ENSMUSG00000027284 ENSMUST00000136725 Cdan1 protein_coding Interval_143753 chr7 16080816 16081135 + 0 NA intron (ENSMUSG00000078796.4, intron 3 of 13) protein_coding-intron (ENSMUSG00000078796.4, intron 3 of 15) 9054 ENSMUSG00000078796.4 ENSMUSG00000078796 ENSMUST00000108509 Zfp541 protein_coding Interval_154810 chr8 23567829 23568729 + 0 NA Intergenic Intergenic -101382 ENSMUSG00000037492.16 ENSMUSG00000037492 ENSMUST00000146774 Zmat4 protein_coding Interval_162247 chr8 126438682 126439410 + 0 NA intron (ENSMUSG00000090290.2, intron 20 of 29) protein_coding-intron (ENSMUSG00000090290.2, intron 20 of 29) 16518 ENSMUSG00000051671.7 ENSMUSG00000051671 ENSMUST00000211868 Coa6 protein_coding Interval_132811 chr5 148011990 148012949 + 0 NA intron (ENSMUSG00000029651.16, intron 1 of 14) protein_coding-intron (ENSMUSG00000029651.16, intron 1 of 14) -55303 ENSMUSG00000085565.1 ENSMUSG00000085565 ENSMUST00000138406 Gm15721 lincRNA Interval_96667 chr2 127006735 127007223 + 0 NA Intergenic Intergenic -1775 ENSMUSG00000001998.15 ENSMUSG00000001998 ENSMUST00000142740 Ap4e1 protein_coding Interval_148111 chr7 79293731 79294851 + 0 NA intron (ENSMUSG00000039202.12, intron 1 of 5) protein_coding-intron (ENSMUSG00000039202.12, intron 1 of 10) -4734 ENSMUSG00000108460.1 ENSMUSG00000108460 ENSMUST00000205557 Gm39041 TEC Interval_1582 chr1 27979308 27979579 + 0 NA Intergenic Intergenic -10467 ENSMUSG00000101372.1 ENSMUSG00000101372 ENSMUST00000189614 Gm19028 processed_pseudogene Interval_100624 chr2 170529657 170530615 + 0 NA Intergenic Intergenic -18209 ENSMUSG00000085495.1 ENSMUSG00000085495 ENSMUST00000126086 Gm16796 antisense Interval_114964 chr4 87739652 87739891 + 0 NA Intergenic Intergenic 66552 ENSMUSG00000028496.17 ENSMUSG00000028496 ENSMUST00000142454 Mllt3 protein_coding Interval_106151 chr3 93706936 93707492 + 0 NA promoter-TSS (ENSMUSG00000104229.1) unprocessed_pseudogene-promoter-TSS (ENSMUSG00000104229.1) -858 ENSMUSG00000104229.1 ENSMUSG00000104229 ENSMUST00000195682 Gm18433 unprocessed_pseudogene Interval_42616 chr13 16822263 16822457 + 0 NA Intergenic Intergenic 37112 ENSMUSG00000087872.1 ENSMUSG00000087872 ENSMUST00000157247 Gm26098 misc_RNA Interval_112379 chr4 40939836 40940052 + 0 NA intron (ENSMUSG00000028416.13, intron 4 of 6) protein_coding-intron (ENSMUSG00000028416.13, intron 4 of 6) 8350 ENSMUSG00000028416.13 ENSMUSG00000028416 ENSMUST00000030125 Bag1 protein_coding Interval_90126 chr2 28374756 28375275 + 0 NA Intergenic Intergenic -50965 ENSMUSG00000087196.1 ENSMUSG00000087196 ENSMUST00000144634 Gm13373 lincRNA Interval_21330 chr10 128018409 128018642 + 0 NA intron (ENSMUSG00000025395.14, intron 4 of 12) protein_coding-intron (ENSMUSG00000025395.14, intron 4 of 12) 3357 ENSMUSG00000025395.14 ENSMUSG00000025395 ENSMUST00000138330 Prim1 protein_coding Interval_165995 chr9 55272090 55272454 + 0 NA intron (ENSMUSG00000032311.17, intron 2 of 3) protein_coding-intron (ENSMUSG00000032311.17, intron 3 of 3) 11353 ENSMUSG00000032311.17 ENSMUSG00000032311 ENSMUST00000133659 Nrg4 protein_coding Interval_119698 chr4 139302113 139302978 + 0 NA exon (ENSMUSG00000028744.15, exon 4 of 9) protein_coding-exon (ENSMUSG00000028744.15, exon 4 of 9) 8120 ENSMUSG00000028744.15 ENSMUSG00000028744 ENSMUST00000141007 Pqlc2 protein_coding Interval_86088 chr19 36481047 36482286 + 0 NA Intergenic Intergenic -30509 ENSMUSG00000114235.1 ENSMUSG00000114235 ENSMUST00000224716 F530104D19Rik antisense Interval_13877 chr10 24164500 24165147 + 0 NA intron (ENSMUSG00000019998.6, intron 2 of 9) protein_coding-intron (ENSMUSG00000019998.6, intron 2 of 9) 15496 ENSMUSG00000019998.6 ENSMUSG00000019998 ENSMUST00000219553 Stx7 protein_coding Interval_50464 chr14 13740103 13740483 + 0 NA Intergenic Intergenic 37858 ENSMUSG00000098694.1 ENSMUSG00000098694 ENSMUST00000184558 Gm27506 miRNA Interval_21138 chr10 126826122 126826473 + 0 NA Intergenic Intergenic 14204 ENSMUSG00000089550.1 ENSMUSG00000089550 ENSMUST00000158925 Gm24179 snoRNA Interval_122615 chr5 24224877 24225067 + 0 NA Intergenic Intergenic -7437 ENSMUSG00000105141.1 ENSMUSG00000105141 ENSMUST00000196890 Gm43828 processed_pseudogene Interval_30852 chr11 96875616 96876589 + 0 NA Intergenic Intergenic -2148 ENSMUSG00000087117.8 ENSMUSG00000087117 ENSMUST00000183967 Gm11523 processed_transcript Interval_141273 chr6 126769630 126770939 + 0 NA Intergenic Intergenic -29610 ENSMUSG00000038077.7 ENSMUSG00000038077 ENSMUST00000112242 Kcna6 protein_coding Interval_2574 chr1 40657944 40658467 + 0 NA Intergenic Intergenic -23392 ENSMUSG00000026062.12 ENSMUSG00000026062 ENSMUST00000192294 Slc9a2 protein_coding Interval_132411 chr5 144777644 144777856 + 0 NA TTS (ENSMUSG00000045482.16) protein_coding-TTS (ENSMUSG00000045482.16) 3325 ENSMUSG00000088685.1 ENSMUSG00000088685 ENSMUST00000158060 Gm23995 snoRNA Interval_23679 chr11 24434435 24434723 + 0 NA intron (ENSMUSG00000087085.1, intron 1 of 3) lincRNA-intron (ENSMUSG00000087085.1, intron 1 of 3) 8333 ENSMUSG00000087085.1 ENSMUSG00000087085 ENSMUST00000153153 Gm12068 lincRNA Interval_134385 chr6 28041449 28041706 + 0 NA intron (ENSMUSG00000024211.15, intron 2 of 5) protein_coding-intron (ENSMUSG00000024211.15, intron 1 of 9) 92808 ENSMUSG00000024211.15 ENSMUSG00000024211 ENSMUST00000202861 Grm8 protein_coding Interval_57307 chr15 8653513 8653713 + 0 NA exon (ENSMUSG00000103047.1, exon 1 of 1) TEC-exon (ENSMUSG00000103047.1, exon 1 of 1) 1460 ENSMUSG00000103047.1 ENSMUSG00000103047 ENSMUST00000195237 Gm37310 TEC Interval_163144 chr9 15709179 15710450 + 0 NA promoter-TSS (ENSMUSG00000043885.14) protein_coding-promoter-TSS (ENSMUSG00000043885.14) -17074 ENSMUSG00000043885.14 ENSMUSG00000043885 ENSMUST00000214954 Slc36a4 protein_coding Interval_112512 chr4 41706844 41707768 + 0 NA intron (ENSMUSG00000073889.10, intron 2 of 13) protein_coding-intron (ENSMUSG00000073889.10, intron 2 of 13) 6228 ENSMUSG00000036114.3 ENSMUSG00000036114 ENSMUST00000038434 Rpp25l protein_coding Interval_22228 chr11 7379630 7379878 + 0 NA Intergenic Intergenic -89380 ENSMUSG00000087637.1 ENSMUSG00000087637 ENSMUST00000149481 Gm11986 lincRNA Interval_43922 chr13 38064931 38065482 + 0 NA Intergenic Intergenic -20996 ENSMUSG00000098481.1 ENSMUSG00000098481 ENSMUST00000184583 Gm27387 miRNA Interval_71067 chr17 17617659 17618126 + 0 NA intron (ENSMUSG00000023845.7, intron 1 of 11) protein_coding-intron (ENSMUSG00000023845.7, intron 1 of 17) 6749 ENSMUSG00000023845.7 ENSMUSG00000023845 ENSMUST00000231666 Lnpep protein_coding Interval_100985 chr2 173824903 173825107 + 0 NA intron (ENSMUSG00000085938.1, intron 1 of 4) unprocessed_pseudogene-intron (ENSMUSG00000085938.1, intron 1 of 4) 22665 ENSMUSG00000085938.1 ENSMUSG00000085938 ENSMUST00000138925 Gm14371 unprocessed_pseudogene Interval_81062 chr18 53462580 53465502 + 0 NA promoter-TSS (ENSMUSG00000069378.14) protein_coding-promoter-TSS (ENSMUSG00000069378.14) 458 ENSMUSG00000069378.14 ENSMUSG00000069378 ENSMUST00000115398 Prdm6 protein_coding Interval_50716 chr14 18506384 18507084 + 0 NA Intergenic Intergenic -24629 ENSMUSG00000035129.6 ENSMUSG00000035129 ENSMUST00000038304 Gm6781 processed_pseudogene Interval_115045 chr4 88838790 88839003 + 0 NA Intergenic Intergenic -2965 ENSMUSG00000070904.4 ENSMUSG00000070904 ENSMUST00000094973 Ifna4 protein_coding Interval_44983 chr13 51137538 51137894 + 0 NA intron (ENSMUSG00000021395.11, intron 1 of 3) protein_coding-intron (ENSMUSG00000021395.11, intron 3 of 5) 3397 ENSMUSG00000021395.11 ENSMUSG00000021395 ENSMUST00000223152 Spin1 protein_coding Interval_115755 chr4 103379514 103380366 + 0 NA Intergenic Intergenic -2560 ENSMUSG00000086136.1 ENSMUSG00000086136 ENSMUST00000150345 Gm12718 lincRNA Interval_89506 chr2 21267264 21267965 + 0 NA Intergenic Intergenic 23509 ENSMUSG00000084071.1 ENSMUSG00000084071 ENSMUST00000117483 Gm13378 processed_pseudogene Interval_62627 chr15 95789918 95791682 + 0 NA promoter-TSS (ENSMUSG00000064210.7) protein_coding-promoter-TSS (ENSMUSG00000064210.7) -92 ENSMUSG00000064210.7 ENSMUSG00000064210 ENSMUST00000226761 Ano6 protein_coding Interval_61590 chr15 82818489 82818681 + 0 NA intron (ENSMUSG00000041852.15, intron 3 of 5) protein_coding-intron (ENSMUSG00000041852.15, intron 3 of 4) -14621 ENSMUSG00000116280.1 ENSMUSG00000116280 ENSMUST00000229945 Gm49435 unprocessed_pseudogene Interval_156 JH584304.1 12346 14447 + 0 NA NA NA NA NA Interval_53037 chr14 53736295 53736926 + 0 NA Intergenic Intergenic -1765 ENSMUSG00000085302.3 ENSMUSG00000085302 ENSMUST00000130122 Trav8-2 TR_V_pseudogene Interval_170109 chr9 104676686 104677292 + 0 NA intron (ENSMUSG00000032564.16, intron 1 of 8) protein_coding-intron (ENSMUSG00000032564.16, intron 1 of 15) -195479 ENSMUSG00000089116.1 ENSMUSG00000089116 ENSMUST00000158491 Gm25904 snoRNA Interval_163053 chr9 14845160 14847594 + 0 NA promoter-TSS (ENSMUSG00000059658.5) processed_pseudogene-promoter-TSS (ENSMUSG00000059658.5) -665 ENSMUSG00000059658.5 ENSMUSG00000059658 ENSMUST00000161469 Gm16379 processed_pseudogene Interval_133717 chr6 9613065 9613300 + 0 NA Intergenic Intergenic 466416 ENSMUSG00000107851.1 ENSMUSG00000107851 ENSMUST00000203681 Gm35736 processed_pseudogene Interval_79128 chr18 24815777 24816266 + 0 NA intron (ENSMUSG00000034295.10, intron 3 of 24) protein_coding-intron (ENSMUSG00000034295.10, intron 3 of 26) 54858 ENSMUSG00000088920.1 ENSMUSG00000088920 ENSMUST00000158295 Gm24294 misc_RNA Interval_118650 chr4 132993221 132994225 + 0 NA intron (ENSMUSG00000028874.14, intron 5 of 12) protein_coding-intron (ENSMUSG00000028874.14, intron 5 of 12) 16607 ENSMUSG00000028874.14 ENSMUSG00000028874 ENSMUST00000171223 Fgr protein_coding Interval_75371 chr17 66206199 66206787 + 0 NA Intergenic Intergenic 13141 ENSMUSG00000117296.1 ENSMUSG00000117296 ENSMUST00000233041 Gm20742 lincRNA Interval_109152 chr3 136885530 136885777 + 0 NA intron (ENSMUSG00000028161.17, intron 6 of 12) protein_coding-intron (ENSMUSG00000028161.17, intron 6 of 13) -2296 ENSMUSG00000028161.17 ENSMUSG00000028161 ENSMUST00000130114 Ppp3ca protein_coding Interval_73826 chr17 44211022 44211698 + 0 NA intron (ENSMUSG00000023959.10, intron 1 of 5) protein_coding-intron (ENSMUSG00000023959.10, intron 1 of 5) 76592 ENSMUSG00000023959.10 ENSMUSG00000023959 ENSMUST00000233193 Clic5 protein_coding Interval_114027 chr4 62609426 62610410 + 0 NA intron (ENSMUSG00000059810.18, intron 3 of 6) protein_coding-intron (ENSMUSG00000059810.18, intron 7 of 19) -13791 ENSMUSG00000059810.18 ENSMUSG00000059810 ENSMUST00000153875 Rgs3 protein_coding Interval_131538 chr5 137893112 137893409 + 0 NA exon (ENSMUSG00000029727.7, exon 13 of 13) protein_coding-exon (ENSMUSG00000029727.7, exon 13 of 13) 3699 ENSMUSG00000083813.1 ENSMUSG00000083813 ENSMUST00000121449 Gm15502 processed_pseudogene Interval_153478 chr7 145103040 145103315 + 0 NA Intergenic Intergenic -59819 ENSMUSG00000108967.1 ENSMUSG00000108967 ENSMUST00000207878 Gm45181 lincRNA Interval_156354 chr8 47630551 47630869 + 0 NA Intergenic Intergenic 2054 ENSMUSG00000062458.5 ENSMUSG00000062458 ENSMUST00000071573 Gm8623 processed_pseudogene Interval_113648 chr4 57252971 57253196 + 0 NA intron (ENSMUSG00000038764.14, intron 7 of 9) protein_coding-intron (ENSMUSG00000038764.14, intron 7 of 25) -47013 ENSMUSG00000085654.1 ENSMUSG00000085654 ENSMUST00000129102 Gm12536 lincRNA Interval_44665 chr13 47006543 47006883 + 0 NA intron (ENSMUSG00000051606.5, intron 2 of 6) processed_transcript-intron (ENSMUSG00000051606.5, intron 2 of 2) -1611 ENSMUSG00000051606.5 ENSMUSG00000051606 ENSMUST00000060680 2010001K21Rik processed_transcript Interval_39479 chr12 88335089 88335370 + 0 NA exon (ENSMUSG00000113617.1, exon 1 of 1) processed_pseudogene-exon (ENSMUSG00000113617.1, exon 1 of 1) 605 ENSMUSG00000113617.1 ENSMUSG00000113617 ENSMUST00000221159 Gm8655 processed_pseudogene Interval_167964 chr9 75024083 75024435 + 0 NA intron (ENSMUSG00000034858.16, intron 11 of 12) protein_coding-intron (ENSMUSG00000034858.16, intron 10 of 11) -27718 ENSMUSG00000007656.13 ENSMUSG00000007656 ENSMUST00000166549 Arpp19 protein_coding Interval_168443 chr9 80504151 80504897 + 0 NA Intergenic Intergenic -39086 ENSMUSG00000032343.15 ENSMUSG00000032343 ENSMUST00000185068 Impg1 protein_coding Interval_31918 chr11 103852651 103853769 + 0 NA intron (ENSMUSG00000034187.18, intron 4 of 4) protein_coding-intron (ENSMUSG00000034187.18, intron 15 of 20) 19112 ENSMUSG00000034187.18 ENSMUSG00000034187 ENSMUST00000149642 Nsf protein_coding Interval_32095 chr11 105228142 105228569 + 0 NA intron (ENSMUSG00000020694.17, intron 6 of 17) protein_coding-intron (ENSMUSG00000020694.17, intron 6 of 20) 19502 ENSMUSG00000020694.17 ENSMUSG00000020694 ENSMUST00000146910 Tlk2 protein_coding Interval_51993 chr14 34471529 34472233 + 0 NA intron (ENSMUSG00000021796.15, intron 1 of 4) protein_coding-intron (ENSMUSG00000021796.15, intron 1 of 12) -29834 ENSMUSG00000090779.1 ENSMUSG00000090779 ENSMUST00000171248 Gm17110 antisense Interval_94121 chr2 84480891 84482817 + 0 NA Intergenic Intergenic -23744 ENSMUSG00000027082.15 ENSMUSG00000027082 ENSMUST00000144775 Tfpi protein_coding Interval_169065 chr9 91386554 91387662 + 0 NA TTS (ENSMUSG00000036972.14) protein_coding-TTS (ENSMUSG00000036972.14) -5706 ENSMUSG00000102803.1 ENSMUSG00000102803 ENSMUST00000195215 Gm37477 TEC Interval_129224 chr5 118297457 118297676 + 0 NA Intergenic Intergenic 31117 ENSMUSG00000095477.1 ENSMUSG00000095477 ENSMUST00000104098 Gm25076 snoRNA Interval_79968 chr18 36342099 36343403 + 0 NA promoter-TSS (ENSMUSG00000046727.13) protein_coding-promoter-TSS (ENSMUSG00000046727.13) 171 ENSMUSG00000046727.13 ENSMUSG00000046727 ENSMUST00000144158 Cystm1 protein_coding Interval_34555 chr12 5080457 5081020 + 0 NA TTS (ENSMUSG00000020627.10) protein_coding-TTS (ENSMUSG00000020627.10) -13290 ENSMUSG00000112723.1 ENSMUSG00000112723 ENSMUST00000219035 Gm9110 processed_pseudogene Interval_34131 chr11 120804860 120806773 + 0 NA TTS (ENSMUSG00000025153.9) protein_coding-TTS (ENSMUSG00000025153.9) -9421 ENSMUSG00000025155.15 ENSMUSG00000025155 ENSMUST00000129955 Dus1l protein_coding Interval_117946 chr4 127243486 127244359 + 0 NA intron (ENSMUSG00000042380.8, intron 1 of 1) protein_coding-intron (ENSMUSG00000042380.8, intron 1 of 1) 138 ENSMUSG00000042380.8 ENSMUSG00000042380 ENSMUST00000142029 Smim12 protein_coding Interval_6797 chr1 119533263 119533751 + 0 NA intron (ENSMUSG00000101731.1, intron 3 of 3) lincRNA-intron (ENSMUSG00000101731.1, intron 1 of 1) 2658 ENSMUSG00000101731.1 ENSMUSG00000101731 ENSMUST00000186206 3830432H09Rik lincRNA Interval_167543 chr9 70355707 70357159 + 0 NA intron (ENSMUSG00000032220.10, intron 17 of 17) protein_coding-intron (ENSMUSG00000032220.10, intron 17 of 27) 49320 ENSMUSG00000093763.1 ENSMUSG00000093763 ENSMUST00000176002 Mir5626 miRNA Interval_148756 chr7 85669416 85670126 + 0 NA Intergenic Intergenic -26585 ENSMUSG00000092567.2 ENSMUSG00000092567 ENSMUST00000173890 Vmn2r-ps73 unprocessed_pseudogene Interval_53667 chr14 60751335 60751984 + 0 NA exon (ENSMUSG00000021990.16, exon 9 of 13) protein_coding-exon (ENSMUSG00000021990.16, exon 9 of 13) -16475 ENSMUSG00000071347.3 ENSMUSG00000071347 ENSMUST00000025940 C1qtnf9 protein_coding Interval_47347 chr13 81727923 81729135 + 0 NA intron (ENSMUSG00000051098.6, intron 1 of 1) protein_coding-intron (ENSMUSG00000051098.6, intron 1 of 1) -3501 ENSMUSG00000114905.1 ENSMUSG00000114905 ENSMUST00000224298 Gm48113 processed_pseudogene Interval_167271 chr9 66939088 66939666 + 0 NA Intergenic Intergenic -6789 ENSMUSG00000036781.13 ENSMUSG00000036781 ENSMUST00000123931 Rps27l protein_coding Interval_149059 chr7 92770868 92771759 + 0 NA intron (ENSMUSG00000030643.14, intron 1 of 3) protein_coding-intron (ENSMUSG00000030643.14, intron 1 of 4) -6270 ENSMUSG00000030643.14 ENSMUSG00000030643 ENSMUST00000107179 Rab30 protein_coding Interval_67810 chr16 57362652 57363628 + 0 NA intron (ENSMUSG00000043336.14, intron 1 of 4) protein_coding-intron (ENSMUSG00000043336.14, intron 1 of 4) 10047 ENSMUSG00000043336.14 ENSMUSG00000043336 ENSMUST00000159414 Filip1l protein_coding Interval_50812 chr14 19986644 19987457 + 0 NA Intergenic Intergenic -9866 ENSMUSG00000043004.13 ENSMUSG00000043004 ENSMUST00000161247 Gng2 protein_coding Interval_35010 chr12 16629857 16630238 + 0 NA intron (ENSMUSG00000020593.16, intron 1 of 21) protein_coding-intron (ENSMUSG00000020593.16, intron 1 of 21) -19081 ENSMUSG00000020593.16 ENSMUSG00000020593 ENSMUST00000221146 Lpin1 protein_coding Interval_120364 chr4 148114671 148116893 + 0 NA exon (ENSMUSG00000029005.4, exon 2 of 7) protein_coding-exon (ENSMUSG00000029005.4, exon 2 of 7) 14916 ENSMUSG00000029005.4 ENSMUSG00000029005 ENSMUST00000030862 Draxin protein_coding Interval_52000 chr14 34527604 34529095 + 0 NA TTS (ENSMUSG00000021798.14) protein_coding-TTS (ENSMUSG00000021798.14) -5548 ENSMUSG00000021797.2 ENSMUSG00000021797 ENSMUST00000022325 9230112D13Rik protein_coding Interval_110804 chr4 8555944 8556374 + 0 NA intron (ENSMUSG00000047187.9, intron 1 of 7) protein_coding-intron (ENSMUSG00000047187.9, intron 1 of 7) 20515 ENSMUSG00000047187.9 ENSMUSG00000047187 ENSMUST00000060232 Rab2a protein_coding Interval_46263 chr13 63188561 63189116 + 0 NA intron (ENSMUSG00000021458.17, intron 3 of 3) protein_coding-intron (ENSMUSG00000021458.17, intron 6 of 15) -22112 ENSMUSG00000113853.1 ENSMUSG00000113853 ENSMUST00000221858 Gm47583 TEC Interval_72548 chr17 30623143 30625278 + 0 NA promoter-TSS (ENSMUSG00000033826.10) protein_coding-promoter-TSS (ENSMUSG00000033826.10) 2695 ENSMUSG00000099474.1 ENSMUSG00000099474 ENSMUST00000188852 1700097N02Rik bidirectional_promoter_lncRNA Interval_53971 chr14 63940266 63944234 + 0 NA Intergenic Intergenic -1423 ENSMUSG00000063060.6 ENSMUSG00000063060 ENSMUST00000079652 Sox7 protein_coding Interval_152972 chr7 140152968 140155189 + 0 NA promoter-TSS (ENSMUSG00000045733.7) protein_coding-promoter-TSS (ENSMUSG00000045733.7) -537 ENSMUSG00000045733.7 ENSMUSG00000045733 ENSMUST00000156791 Sprn protein_coding Interval_46132 chr13 61905843 61906149 + 0 NA Intergenic Intergenic -11553 ENSMUSG00000113887.1 ENSMUSG00000113887 ENSMUST00000222548 Gm35619 processed_pseudogene Interval_140617 chr6 120126349 120126759 + 0 NA intron (ENSMUSG00000041377.12, intron 1 of 3) protein_coding-intron (ENSMUSG00000041377.12, intron 1 of 3) 17196 ENSMUSG00000095086.1 ENSMUSG00000095086 ENSMUST00000180263 Gm25327 snRNA Interval_130945 chr5 134194395 134194605 + 0 NA intron (ENSMUSG00000015942.9, intron 3 of 18) protein_coding-intron (ENSMUSG00000015942.9, intron 3 of 15) -3517 ENSMUSG00000015942.9 ENSMUSG00000015942 ENSMUST00000152587 Gtf2ird2 protein_coding Interval_110332 chr3 157006675 157007093 + 0 NA intron (ENSMUSG00000040037.13, intron 2 of 2) protein_coding-intron (ENSMUSG00000040037.13, intron 2 of 6) 6467 ENSMUSG00000106018.1 ENSMUSG00000106018 ENSMUST00000198749 Gm43527 TEC Interval_69539 chr16 94107475 94108033 + 0 NA intron (ENSMUSG00000062713.8, intron 5 of 10) protein_coding-intron (ENSMUSG00000062713.8, intron 5 of 10) 22823 ENSMUSG00000062713.8 ENSMUSG00000062713 ENSMUST00000231295 Sim2 protein_coding Interval_128012 chr5 110276771 110278028 + 0 NA TTS (ENSMUSG00000087439.1) antisense-TTS (ENSMUSG00000087439.1) -7545 ENSMUSG00000029500.16 ENSMUSG00000029500 ENSMUST00000196381 Pgam5 protein_coding Interval_102001 chr3 14666898 14667729 + 0 NA Intergenic Intergenic 25586 ENSMUSG00000027555.8 ENSMUSG00000027555 ENSMUST00000029071 Car13 protein_coding Interval_157561 chr8 71439618 71439928 + 0 NA Intergenic Intergenic 23849 ENSMUSG00000007950.9 ENSMUSG00000007950 ENSMUST00000212503 Abhd8 protein_coding Interval_168529 chr9 83113878 83114145 + 0 NA promoter-TSS (ENSMUSG00000102882.1) TEC-promoter-TSS (ENSMUSG00000102882.1) -97 ENSMUSG00000102882.1 ENSMUSG00000102882 ENSMUST00000194697 Gm2065 TEC Interval_115377 chr4 98357852 98358282 + 0 NA intron (ENSMUSG00000028563.16, intron 3 of 4) protein_coding-intron (ENSMUSG00000028563.16, intron 5 of 6) 5640 ENSMUSG00000082144.1 ENSMUSG00000082144 ENSMUST00000119090 Gm12788 processed_pseudogene Interval_2564 chr1 40395727 40396127 + 0 NA Intergenic Intergenic -33643 ENSMUSG00000026069.15 ENSMUSG00000026069 ENSMUST00000053043 Il1rl1 protein_coding Interval_27645 chr11 69257924 69258859 + 0 NA Intergenic Intergenic 17792 ENSMUSG00000089438.1 ENSMUSG00000089438 ENSMUST00000158813 Gm23194 snRNA Interval_11273 chr1 180623583 180624441 + 0 NA Intergenic Intergenic 25024 ENSMUSG00000026496.11 ENSMUSG00000026496 ENSMUST00000195560 Parp1 protein_coding Interval_91079 chr2 34870583 34871629 + 0 NA promoter-TSS (ENSMUSG00000026869.12) protein_coding-promoter-TSS (ENSMUSG00000026869.12) 1104 ENSMUSG00000026869.12 ENSMUSG00000026869 ENSMUST00000202917 Psmd5 protein_coding Interval_67883 chr16 58602377 58602662 + 0 NA Intergenic Intergenic 14459 ENSMUSG00000075002.2 ENSMUSG00000075002 ENSMUST00000099663 Ftdc1 protein_coding Interval_67787 chr16 57190163 57190718 + 0 NA intron (ENSMUSG00000022749.8, intron 10 of 18) protein_coding-intron (ENSMUSG00000022749.8, intron 10 of 17) 10732 ENSMUSG00000022749.8 ENSMUSG00000022749 ENSMUST00000227359 Tbc1d23 protein_coding Interval_70603 chr17 12241838 12242131 + 0 NA intron (ENSMUSG00000014426.9, intron 16 of 25) protein_coding-intron (ENSMUSG00000014426.9, intron 17 of 26) -38133 ENSMUSG00000117325.1 ENSMUSG00000117325 ENSMUST00000233669 Gm49962 processed_pseudogene Interval_130145 chr5 124518715 124519010 + 0 NA intron (ENSMUSG00000029392.12, intron 2 of 6) protein_coding-intron (ENSMUSG00000029392.12, intron 2 of 6) -12271 ENSMUSG00000106662.1 ENSMUSG00000106662 ENSMUST00000198678 Gm43034 TEC Interval_111126 chr4 12466980 12467420 + 0 NA Intergenic Intergenic -130188 ENSMUSG00000104211.1 ENSMUSG00000104211 ENSMUST00000194728 Gm37985 TEC Interval_145877 chr7 41289026 41289248 + 0 NA exon (ENSMUSG00000072259.3, exon 3 of 3) protein_coding-exon (ENSMUSG00000072259.3, exon 3 of 3) -4917 ENSMUSG00000108754.1 ENSMUSG00000108754 ENSMUST00000206040 Gm44748 lincRNA Interval_122280 chr5 20917084 20917501 + 0 NA intron (ENSMUSG00000039968.9, intron 3 of 6) protein_coding-intron (ENSMUSG00000039968.9, intron 3 of 7) 5107 ENSMUSG00000039968.9 ENSMUSG00000039968 ENSMUST00000197089 Rsbn1l protein_coding Interval_406 chr1 4939692 4939924 + 0 NA exon (ENSMUSG00000102653.1, exon 1 of 1) TEC-exon (ENSMUSG00000102653.1, exon 1 of 1) 902 ENSMUSG00000102653.1 ENSMUSG00000102653 ENSMUST00000194114 Gm37079 TEC Interval_151457 chr7 122718975 122719426 + 0 NA intron (ENSMUSG00000066189.9, intron 1 of 2) protein_coding-intron (ENSMUSG00000066189.9, intron 1 of 3) -17282 ENSMUSG00000108718.1 ENSMUSG00000108718 ENSMUST00000206285 Gm44749 TEC Interval_86159 chr19 37173323 37175410 + 0 NA promoter-TSS (ENSMUSG00000039652.16) protein_coding-promoter-TSS (ENSMUSG00000039652.16) 523 ENSMUSG00000097591.1 ENSMUSG00000097591 ENSMUST00000180609 A330032B11Rik antisense Interval_50555 chr14 15140577 15141311 + 0 NA Intergenic Intergenic 16269 ENSMUSG00000114323.1 ENSMUSG00000114323 ENSMUST00000225983 Gm47758 lincRNA Interval_20009 chr10 111932889 111933257 + 0 NA Intergenic Intergenic -39720 ENSMUSG00000063334.16 ENSMUSG00000063334 ENSMUST00000174653 Krr1 protein_coding Interval_79832 chr18 35444051 35444505 + 0 NA intron (ENSMUSG00000024357.10, intron 1 of 2) protein_coding-intron (ENSMUSG00000024357.10, intron 1 of 9) -44826 ENSMUSG00000117731.1 ENSMUSG00000117731 ENSMUST00000237123 Gm50145 antisense Interval_132173 chr5 143084671 143086183 + 0 NA intron (ENSMUSG00000045078.12, intron 7 of 16) protein_coding-intron (ENSMUSG00000045078.12, intron 7 of 16) 17774 ENSMUSG00000105714.1 ENSMUSG00000105714 ENSMUST00000200421 Gm43380 processed_pseudogene Interval_129085 chr5 117323908 117324565 + 0 NA intron (ENSMUSG00000066894.14, intron 1 of 8) protein_coding-intron (ENSMUSG00000066894.14, intron 1 of 8) 590 ENSMUSG00000066894.14 ENSMUSG00000066894 ENSMUST00000139026 Vsig10 protein_coding Interval_71258 chr17 21688910 21689501 + 0 NA promoter-TSS (ENSMUSG00000073448.2) processed_pseudogene-promoter-TSS (ENSMUSG00000073448.2) -975 ENSMUSG00000073448.2 ENSMUSG00000073448 ENSMUST00000097384 Gm10509 processed_pseudogene Interval_114515 chr4 81908512 81909137 + 0 NA Intergenic Intergenic -9689 ENSMUSG00000084718.1 ENSMUSG00000084718 ENSMUST00000122769 n-R5s187 rRNA Interval_142243 chr6 139780170 139780425 + 0 NA intron (ENSMUSG00000030228.18, intron 6 of 20) protein_coding-intron (ENSMUSG00000030228.18, intron 9 of 23) 3867 ENSMUSG00000103951.1 ENSMUSG00000103951 ENSMUST00000193906 Gm37269 TEC Interval_135065 chr6 35115333 35115649 + 0 NA intron (ENSMUSG00000038784.13, intron 1 of 10) protein_coding-intron (ENSMUSG00000038784.13, intron 1 of 10) 18196 ENSMUSG00000038784.13 ENSMUSG00000038784 ENSMUST00000202666 Cnot4 protein_coding Interval_4751 chr1 78310081 78311438 + 0 NA intron (ENSMUSG00000032908.9, intron 1 of 4) protein_coding-intron (ENSMUSG00000032908.9, intron 1 of 4) 414 ENSMUSG00000032908.9 ENSMUSG00000032908 ENSMUST00000036172 Sgpp2 protein_coding Interval_50928 chr14 20803305 20804146 + 0 NA Intergenic Intergenic 9486 ENSMUSG00000114241.1 ENSMUSG00000114241 ENSMUST00000224276 Gm30108 lincRNA Interval_63068 chr15 98933434 98935895 + 0 NA promoter-TSS (ENSMUSG00000023004.8) protein_coding-promoter-TSS (ENSMUSG00000023004.8) 17 ENSMUSG00000116223.1 ENSMUSG00000116223 ENSMUST00000229635 Gm41396 antisense Interval_139280 chr6 97837840 97838591 + 0 NA intron (ENSMUSG00000035158.15, intron 1 of 9) protein_coding-intron (ENSMUSG00000035158.15, intron 1 of 9) 47703 ENSMUSG00000089464.1 ENSMUSG00000089464 ENSMUST00000158839 Gm23703 snoRNA Interval_147751 chr7 73371855 73372901 + 0 NA intron (ENSMUSG00000097756.2, intron 1 of 2) antisense-intron (ENSMUSG00000097756.2, intron 1 of 1) 3396 ENSMUSG00000097756.2 ENSMUSG00000097756 ENSMUST00000206959 A730056A06Rik antisense Interval_55327 chr14 83008073 83009077 + 0 NA Intergenic Intergenic 115738 ENSMUSG00000115031.1 ENSMUSG00000115031 ENSMUST00000228219 Gm49051 processed_pseudogene Interval_115855 chr4 105245324 105246225 + 0 NA Intergenic Intergenic 88427 ENSMUSG00000028517.8 ENSMUSG00000028517 ENSMUST00000064139 Plpp3 protein_coding Interval_79038 chr18 24116476 24117236 + 0 NA intron (ENSMUSG00000047989.11, intron 1 of 4) protein_coding-intron (ENSMUSG00000047989.11, intron 1 of 5) 5097 ENSMUSG00000047989.11 ENSMUSG00000047989 ENSMUST00000125169 Ino80c protein_coding Interval_130530 chr5 128593086 128593952 + 0 NA intron (ENSMUSG00000072591.10, intron 1 of 2) lincRNA-intron (ENSMUSG00000072591.10, intron 2 of 6) 4437 ENSMUSG00000105059.1 ENSMUSG00000105059 ENSMUST00000199981 Gm42498 TEC Interval_73291 chr17 36002107 36002368 + 0 NA intron (ENSMUSG00000092368.1, intron 1 of 1) antisense-intron (ENSMUSG00000092368.1, intron 1 of 1) 7784 ENSMUSG00000092368.1 ENSMUSG00000092368 ENSMUST00000173900 A930015D03Rik antisense Interval_121384 chr4 155397435 155398549 + 0 NA promoter-TSS (ENSMUSG00000029054.8) protein_coding-promoter-TSS (ENSMUSG00000029054.8) 55 ENSMUSG00000029054.8 ENSMUSG00000029054 ENSMUST00000129892 Gabrd protein_coding Interval_136827 chr6 61046668 61048544 + 0 NA Intergenic Intergenic -2613 ENSMUSG00000108299.1 ENSMUSG00000108299 ENSMUST00000204373 Gm43892 unprocessed_pseudogene Interval_115035 chr4 88760114 88761032 + 0 NA TTS (ENSMUSG00000094498.1) pseudogene-TTS (ENSMUSG00000094498.1) 454 ENSMUSG00000100505.1 ENSMUSG00000100505 ENSMUST00000191112 Gm13283 protein_coding Interval_99578 chr2 163330840 163331475 + 0 NA Intergenic Intergenic 66836 ENSMUSG00000017817.11 ENSMUSG00000017817 ENSMUST00000109425 Jph2 protein_coding Interval_61695 chr15 83449846 83450436 + 0 NA intron (ENSMUSG00000016664.16, intron 1 of 11) protein_coding-intron (ENSMUSG00000016664.16, intron 1 of 11) -44078 ENSMUSG00000049414.7 ENSMUSG00000049414 ENSMUST00000079706 Gm5417 processed_pseudogene Interval_78015 chr18 6721832 6722072 + 0 NA Intergenic Intergenic -30635 ENSMUSG00000117620.1 ENSMUSG00000117620 ENSMUST00000234799 Gm50077 processed_pseudogene Interval_73353 chr17 36506991 36508011 + 0 NA intron (ENSMUSG00000092493.1, intron 1 of 1) unprocessed_pseudogene-intron (ENSMUSG00000092493.1, intron 1 of 1) 321 ENSMUSG00000092493.1 ENSMUSG00000092493 ENSMUST00000173452 Gm20451 unprocessed_pseudogene Interval_55761 chr14 99710470 99710794 + 0 NA Intergenic Intergenic 63176 ENSMUSG00000065238.1 ENSMUSG00000065238 ENSMUST00000083304 Gm22970 snRNA Interval_141810 chr6 134643483 134643809 + 0 NA intron (ENSMUSG00000042992.15, intron 1 of 2) protein_coding-intron (ENSMUSG00000042992.15, intron 1 of 3) -11158 ENSMUSG00000032718.4 ENSMUSG00000032718 ENSMUST00000047443 Mansc1 protein_coding Interval_10821 chr1 175611323 175611589 + 0 NA intron (ENSMUSG00000026526.14, intron 5 of 9) protein_coding-intron (ENSMUSG00000026526.14, intron 5 of 9) -1743 ENSMUSG00000026526.14 ENSMUSG00000026526 ENSMUST00000154956 Fh1 protein_coding Interval_90949 chr2 33652450 33653506 + 0 NA promoter-TSS (ENSMUSG00000081244.3) processed_pseudogene-promoter-TSS (ENSMUSG00000081244.3) -180 ENSMUSG00000081244.3 ENSMUSG00000081244 ENSMUST00000121118 Gm13529 processed_pseudogene Interval_124648 chr5 52821704 52821957 + 0 NA exon (ENSMUSG00000029179.14, exon 12 of 12) protein_coding-exon (ENSMUSG00000029179.14, exon 12 of 12) -33517 ENSMUSG00000029176.13 ENSMUSG00000029176 ENSMUST00000138629 Anapc4 protein_coding Interval_172817 chrX 50590764 50591968 + 0 NA intron (ENSMUSG00000085396.7, intron 1 of 11) processed_transcript-intron (ENSMUSG00000085396.7, intron 4 of 6) -26483 ENSMUSG00000085396.7 ENSMUSG00000085396 ENSMUST00000148530 Firre processed_transcript Interval_140528 chr6 119324445 119325315 + 0 NA intron (ENSMUSG00000055003.14, intron 1 of 4) protein_coding-intron (ENSMUSG00000041460.16, intron 26 of 37) 4324 ENSMUSG00000055003.14 ENSMUSG00000055003 ENSMUST00000124192 Lrtm2 protein_coding Interval_135310 chr6 38215785 38216917 + 0 NA intron (ENSMUSG00000063455.16, intron 1 of 19) protein_coding-intron (ENSMUSG00000063455.16, intron 1 of 19) 37658 ENSMUSG00000063455.16 ENSMUSG00000063455 ENSMUST00000152464 D630045J12Rik protein_coding Interval_60050 chr15 64246415 64246659 + 0 NA intron (ENSMUSG00000022377.16, intron 2 of 4) protein_coding-intron (ENSMUSG00000022377.16, intron 3 of 30) -67960 ENSMUSG00000115752.1 ENSMUSG00000115752 ENSMUST00000226773 1700010G06Rik antisense Interval_53573 chr14 59457105 59457282 + 0 NA intron (ENSMUSG00000021981.10, intron 2 of 3) protein_coding-intron (ENSMUSG00000021981.10, intron 1 of 10) 16212 ENSMUSG00000021981.10 ENSMUSG00000021981 ENSMUST00000224893 Cab39l protein_coding Interval_135056 chr6 35009006 35009213 + 0 NA Intergenic Intergenic -20705 ENSMUSG00000029847.13 ENSMUSG00000029847 ENSMUST00000144079 Slc23a4 protein_coding Interval_102164 chr3 19060090 19060690 + 0 NA Intergenic Intergenic 83509 ENSMUSG00000103135.1 ENSMUSG00000103135 ENSMUST00000193065 Gm37979 TEC Interval_152564 chr7 134605749 134606122 + 0 NA Intergenic Intergenic -54400 ENSMUSG00000108702.1 ENSMUSG00000108702 ENSMUST00000205452 Gm9333 processed_pseudogene Interval_138881 chr6 92869499 92870419 + 0 NA exon (ENSMUSG00000030022.14, exon 22 of 40) protein_coding-exon (ENSMUSG00000030022.14, exon 22 of 40) 602 ENSMUSG00000079462.1 ENSMUSG00000079462 ENSMUST00000113434 Gm15737 protein_coding Interval_89596 chr2 23119044 23119745 + 0 NA intron (ENSMUSG00000026779.6, intron 11 of 11) protein_coding-intron (ENSMUSG00000026779.6, intron 11 of 11) 36503 ENSMUSG00000026779.6 ENSMUSG00000026779 ENSMUST00000136207 Mastl protein_coding Interval_46892 chr13 73251087 73252316 + 0 NA Intergenic Intergenic -8778 ENSMUSG00000021604.15 ENSMUSG00000021604 ENSMUST00000022095 Irx4 protein_coding Interval_96167 chr2 120207911 120208127 + 0 NA intron (ENSMUSG00000050211.14, intron 2 of 5) protein_coding-intron (ENSMUSG00000050211.14, intron 1 of 19) 37089 ENSMUSG00000050211.14 ENSMUSG00000050211 ENSMUST00000152263 Pla2g4e protein_coding Interval_113286 chr4 53117559 53118030 + 0 NA intron (ENSMUSG00000015243.4, intron 5 of 49) protein_coding-intron (ENSMUSG00000015243.4, intron 5 of 49) -76868 ENSMUSG00000015243.4 ENSMUSG00000015243 ENSMUST00000149127 Abca1 protein_coding Interval_118331 chr4 130325298 130325851 + 0 NA intron (ENSMUSG00000028772.19, intron 5 of 5) protein_coding-intron (ENSMUSG00000028772.19, intron 7 of 7) -16901 ENSMUSG00000073752.2 ENSMUSG00000073752 ENSMUST00000097865 Gm10570 antisense Interval_162615 chr9 6668211 6669011 + 0 NA Intergenic Intergenic -2836 ENSMUSG00000110732.1 ENSMUSG00000110732 ENSMUST00000217088 Gm48674 processed_pseudogene Interval_109700 chr3 146072575 146073040 + 0 NA intron (ENSMUSG00000043020.13, intron 10 of 22) protein_coding-intron (ENSMUSG00000043020.13, intron 10 of 22) -25622 ENSMUSG00000043020.13 ENSMUSG00000043020 ENSMUST00000161104 Wdr63 protein_coding Interval_53346 chr14 56471445 56472239 + 0 NA intron (ENSMUSG00000000365.9, intron 6 of 13) protein_coding-intron (ENSMUSG00000000365.9, intron 17 of 36) -37441 ENSMUSG00000000365.9 ENSMUSG00000000365 ENSMUST00000225737 Rnf17 protein_coding Interval_40250 chr12 102756411 102759281 + 0 NA promoter-TSS (ENSMUSG00000041712.7) protein_coding-promoter-TSS (ENSMUSG00000041712.7) -43 ENSMUSG00000091931.5 ENSMUSG00000091931 ENSMUST00000179263 Gon7 protein_coding Interval_19224 chr10 95597760 95598487 + 0 NA Intergenic Intergenic -5669 ENSMUSG00000089618.1 ENSMUSG00000089618 ENSMUST00000158993 Gm23776 misc_RNA Interval_47626 chr13 90295412 90295596 + 0 NA Intergenic Intergenic 57332 ENSMUSG00000102756.1 ENSMUSG00000102756 ENSMUST00000193481 Gm37054 TEC Interval_162602 chr9 6159886 6160298 + 0 NA Intergenic Intergenic -8569 ENSMUSG00000032006.15 ENSMUSG00000032006 ENSMUST00000214892 Pdgfd protein_coding Interval_116292 chr4 109393783 109394699 + 0 NA Intergenic Intergenic 9971 ENSMUSG00000085873.1 ENSMUSG00000085873 ENSMUST00000150239 Ttc39aos1 antisense Interval_43262 chr13 27965914 27966746 + 0 NA Intergenic Intergenic 10177 ENSMUSG00000113281.1 ENSMUSG00000113281 ENSMUST00000221898 Gm11360 processed_pseudogene Interval_78845 chr18 20942717 20944770 + 0 NA promoter-TSS (ENSMUSG00000033107.6) protein_coding-promoter-TSS (ENSMUSG00000033107.6) -17729 ENSMUSG00000033107.6 ENSMUSG00000033107 ENSMUST00000234316 Rnf125 protein_coding Interval_136413 chr6 54228104 54229366 + 0 NA intron (ENSMUSG00000004633.17, intron 6 of 12) protein_coding-intron (ENSMUSG00000004633.17, intron 6 of 12) 26176 ENSMUSG00000086946.7 ENSMUSG00000086946 ENSMUST00000144094 Gm15527 processed_transcript Interval_85242 chr19 24130713 24131584 + 0 NA TTS (ENSMUSG00000024812.11) protein_coding-TTS (ENSMUSG00000024812.11) 15919 ENSMUSG00000024812.11 ENSMUSG00000024812 ENSMUST00000237550 Tjp2 protein_coding Interval_123000 chr5 28304212 28305099 + 0 NA Intergenic Intergenic -58849 ENSMUSG00000044681.19 ENSMUSG00000044681 ENSMUST00000141196 Cnpy1 protein_coding Interval_77717 chr17 94625944 94626197 + 0 NA Intergenic Intergenic 17885 ENSMUSG00000117476.1 ENSMUSG00000117476 ENSMUST00000234959 Gm9416 processed_pseudogene Interval_133822 chr6 12813840 12814096 + 0 NA Intergenic Intergenic -43429 ENSMUSG00000083620.1 ENSMUSG00000083620 ENSMUST00000121833 Gm15529 processed_pseudogene Interval_156569 chr8 52303813 52305656 + 0 NA Intergenic Intergenic -25263 ENSMUSG00000098231.1 ENSMUSG00000098231 ENSMUST00000182090 Gm6463 processed_pseudogene Interval_17357 chr10 76047450 76048344 + 0 NA Intergenic Intergenic 15247 ENSMUSG00000049764.8 ENSMUSG00000049764 ENSMUST00000061617 Zfp280b protein_coding Interval_75233 chr17 64994072 64994694 + 0 NA Intergenic Intergenic -49531 ENSMUSG00000077691.1 ENSMUSG00000077691 ENSMUST00000104503 Gm25344 snoRNA Interval_76223 chr17 78107278 78107690 + 0 NA Intergenic Intergenic -1524 ENSMUSG00000117352.1 ENSMUSG00000117352 ENSMUST00000234287 Gm50029 processed_pseudogene Interval_166915 chr9 63909601 63910184 + 0 NA Intergenic Intergenic 11627 ENSMUSG00000110768.1 ENSMUSG00000110768 ENSMUST00000215935 Gm18541 processed_pseudogene Interval_142209 chr6 138624774 138625091 + 0 NA Intergenic Intergenic 24090 ENSMUSG00000107553.1 ENSMUSG00000107553 ENSMUST00000205235 Gm44266 TEC Interval_53334 chr14 56351774 56352448 + 0 NA Intergenic Intergenic -23887 ENSMUSG00000022229.3 ENSMUSG00000022229 ENSMUST00000225698 Atp12a protein_coding Interval_80052 chr18 36969015 36969427 + 0 NA promoter-TSS (ENSMUSG00000102836.1) protein_coding-promoter-TSS (ENSMUSG00000102836.1) -695 ENSMUSG00000102836.1 ENSMUSG00000102836 ENSMUST00000194544 Gm37013 protein_coding Interval_172232 chrX 11479696 11479903 + 0 NA Intergenic Intergenic -121555 ENSMUSG00000083492.1 ENSMUSG00000083492 ENSMUST00000121327 Gm14515 processed_pseudogene Interval_127596 chr5 105684089 105685592 + 0 NA Intergenic Intergenic -46549 ENSMUSG00000046079.16 ENSMUSG00000046079 ENSMUST00000134605 Lrrc8d protein_coding Interval_167066 chr9 65009103 65009485 + 0 NA intron (ENSMUSG00000033629.6, intron 2 of 10) protein_coding-intron (ENSMUSG00000033629.6, intron 2 of 10) 12399 ENSMUSG00000033629.6 ENSMUSG00000033629 ENSMUST00000036615 Hacd3 protein_coding Interval_99451 chr2 161221936 161222197 + 0 NA Intergenic Intergenic -14786 ENSMUSG00000085469.1 ENSMUSG00000085469 ENSMUST00000145204 Gm14242 lincRNA Interval_156013 chr8 42224987 42225188 + 0 NA Intergenic Intergenic -21824 ENSMUSG00000053038.8 ENSMUSG00000053038 ENSMUST00000065243 Gm6180 processed_pseudogene Interval_129962 chr5 123333604 123334168 + 0 NA TTS (ENSMUSG00000087336.2) antisense-TTS (ENSMUSG00000087336.2) -9948 ENSMUSG00000029438.9 ENSMUSG00000029438 ENSMUST00000117971 Bcl7a protein_coding Interval_52092 chr14 35681067 35681950 + 0 NA Intergenic Intergenic 111555 ENSMUSG00000098696.1 ENSMUSG00000098696 ENSMUST00000184321 Gm27617 misc_RNA Interval_32492 chr11 107887230 107887940 + 0 NA intron (ENSMUSG00000040373.12, intron 1 of 5) protein_coding-intron (ENSMUSG00000040373.12, intron 1 of 5) 23777 ENSMUSG00000040373.12 ENSMUSG00000040373 ENSMUST00000039071 Cacng5 protein_coding Interval_24074 chr11 29996467 29996906 + 0 NA intron (ENSMUSG00000044072.14, intron 2 of 41) protein_coding-intron (ENSMUSG00000044072.14, intron 2 of 41) 14272 ENSMUSG00000080906.1 ENSMUSG00000080906 ENSMUST00000121962 Gm12095 processed_pseudogene Interval_25175 chr11 44770861 44771064 + 0 NA intron (ENSMUSG00000057098.14, intron 6 of 15) protein_coding-intron (ENSMUSG00000057098.14, intron 6 of 15) -108286 ENSMUSG00000085784.1 ENSMUSG00000085784 ENSMUST00000130493 Gm12158 antisense Interval_9732 chr1 161395453 161395891 + 0 NA exon (ENSMUSG00000026700.4, exon 1 of 3) protein_coding-exon (ENSMUSG00000026700.4, exon 1 of 3) 263 ENSMUSG00000026700.4 ENSMUSG00000026700 ENSMUST00000028024 Tnfsf4 protein_coding Interval_47066 chr13 75117138 75117502 + 0 NA intron (ENSMUSG00000021587.5, intron 2 of 2) protein_coding-intron (ENSMUSG00000021587.5, intron 9 of 13) 6502 ENSMUSG00000021587.5 ENSMUSG00000021587 ENSMUST00000222727 Pcsk1 protein_coding Interval_170845 chr9 111117608 111119134 + 0 NA promoter-TSS (ENSMUSG00000032497.19) protein_coding-promoter-TSS (ENSMUSG00000032497.19) 42977 ENSMUSG00000088296.1 ENSMUSG00000088296 ENSMUST00000157671 Gm26409 snRNA Interval_141451 chr6 128355190 128356294 + 0 NA promoter-TSS (ENSMUSG00000001521.12) protein_coding-promoter-TSS (ENSMUSG00000001521.12) -262 ENSMUSG00000097253.2 ENSMUSG00000097253 ENSMUST00000180586 Gm26770 antisense Interval_117865 chr4 126734482 126736531 + 0 NA exon (ENSMUSG00000042477.7, exon 2 of 7) protein_coding-exon (ENSMUSG00000042477.7, exon 2 of 7) 734 ENSMUSG00000042477.7 ENSMUSG00000042477 ENSMUST00000048194 Tfap2e protein_coding Interval_52054 chr14 34896436 34896733 + 0 NA intron (ENSMUSG00000041078.7, intron 2 of 15) protein_coding-intron (ENSMUSG00000041078.7, intron 2 of 15) 1975 ENSMUSG00000065481.1 ENSMUSG00000065481 ENSMUST00000083547 Mir346 miRNA Interval_97888 chr2 144823173 144824047 + 0 NA promoter-TSS (ENSMUSG00000027431.5) protein_coding-promoter-TSS (ENSMUSG00000027431.5) -46 ENSMUSG00000027431.5 ENSMUSG00000027431 ENSMUST00000028918 Scp2d1 protein_coding Interval_155164 chr8 27153378 27154296 + 0 NA intron (ENSMUSG00000031488.14, intron 1 of 1) protein_coding-intron (ENSMUSG00000031488.14, intron 3 of 4) -5991 ENSMUSG00000109589.1 ENSMUSG00000109589 ENSMUST00000211028 Gm45267 antisense Interval_167525 chr9 70246449 70246795 + 0 NA intron (ENSMUSG00000032220.10, intron 1 of 17) protein_coding-intron (ENSMUSG00000032220.10, intron 1 of 27) 39272 ENSMUSG00000032220.10 ENSMUSG00000032220 ENSMUST00000034745 Myo1e protein_coding Interval_37667 chr12 70974215 70975642 + 0 NA intron (ENSMUSG00000060073.9, intron 1 of 9) protein_coding-intron (ENSMUSG00000060073.9, intron 1 of 10) 209 ENSMUSG00000060073.9 ENSMUSG00000060073 ENSMUST00000162898 Psma3 protein_coding Interval_142004 chr6 136495196 136495428 + 0 NA Intergenic Intergenic 6505 ENSMUSG00000071141.7 ENSMUSG00000071141 ENSMUST00000120093 Rpl36a-ps3 processed_pseudogene Interval_167968 chr9 75049881 75050479 + 0 NA intron (ENSMUSG00000007656.13, intron 2 of 3) protein_coding-intron (ENSMUSG00000007656.13, intron 1 of 2) -1797 ENSMUSG00000007656.13 ENSMUSG00000007656 ENSMUST00000166549 Arpp19 protein_coding Interval_145072 chr7 29883584 29883904 + 0 NA Intergenic Intergenic 15119 ENSMUSG00000062040.14 ENSMUSG00000062040 ENSMUST00000160411 Zfp27 protein_coding Interval_3041 chr1 52524243 52524923 + 0 NA intron (ENSMUSG00000100120.1, intron 1 of 4) lincRNA-intron (ENSMUSG00000100120.1, intron 1 of 4) 1681 ENSMUSG00000100120.1 ENSMUSG00000100120 ENSMUST00000189527 Gm553 lincRNA Interval_105728 chr3 88960324 88960521 + 0 NA intron (ENSMUSG00000028053.13, intron 1 of 27) protein_coding-intron (ENSMUSG00000028053.13, intron 1 of 27) -9385 ENSMUSG00000068921.14 ENSMUSG00000068921 ENSMUST00000172790 Dap3 protein_coding Interval_143397 chr7 6382627 6383777 + 0 NA promoter-TSS (ENSMUSG00000062861.8) protein_coding-promoter-TSS (ENSMUSG00000062861.8) -387 ENSMUSG00000062861.8 ENSMUSG00000062861 ENSMUST00000207809 Zfp28 protein_coding Interval_84014 chr19 6112255 6112687 + 0 NA intron (ENSMUSG00000054999.2, intron 10 of 17) protein_coding-intron (ENSMUSG00000054999.2, intron 10 of 17) 6179 ENSMUSG00000024790.8 ENSMUSG00000024790 ENSMUST00000113533 Sac3d1 protein_coding Interval_157104 chr8 65214206 65214646 + 0 NA Intergenic Intergenic 30182 ENSMUSG00000110283.1 ENSMUSG00000110283 ENSMUST00000211021 Gm45249 processed_pseudogene Interval_137019 chr6 66470662 66470937 + 0 NA Intergenic Intergenic -5100 ENSMUSG00000107479.1 ENSMUSG00000107479 ENSMUST00000203449 2610300M13Rik lincRNA Interval_67885 chr16 58675149 58675500 + 0 NA exon (ENSMUSG00000022742.6, exon 5 of 7) protein_coding-exon (ENSMUSG00000022742.6, exon 5 of 7) -2515 ENSMUSG00000022742.6 ENSMUSG00000022742 ENSMUST00000231342 Cpox protein_coding Interval_65690 chr16 25445627 25445850 + 0 NA Intergenic Intergenic -2465 ENSMUSG00000116828.1 ENSMUSG00000116828 ENSMUST00000232460 Gm18896 processed_pseudogene Interval_9431 chr1 157048181 157049161 + 0 NA intron (ENSMUSG00000101768.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000101768.1, intron 1 of 2) 5124 ENSMUSG00000103325.1 ENSMUSG00000103325 ENSMUST00000193527 Gm10531 TEC Interval_108007 chr3 119711595 119711869 + 0 NA Intergenic Intergenic 2216 ENSMUSG00000106037.1 ENSMUSG00000106037 ENSMUST00000196114 Gm4332 processed_pseudogene Interval_103240 chr3 37331698 37332634 + 0 NA intron (ENSMUSG00000106407.1, intron 1 of 1) processed_transcript-intron (ENSMUSG00000106407.1, intron 1 of 1) 5094 ENSMUSG00000083353.1 ENSMUSG00000083353 ENSMUST00000121938 Gm12540 processed_pseudogene Interval_108923 chr3 133365768 133367723 + 0 NA intron (ENSMUSG00000028013.16, intron 7 of 8) protein_coding-intron (ENSMUSG00000028013.16, intron 7 of 11) 45277 ENSMUSG00000028013.16 ENSMUSG00000028013 ENSMUST00000196807 Ppa2 protein_coding Interval_93160 chr2 70732965 70733445 + 0 NA intron (ENSMUSG00000041997.16, intron 13 of 21) protein_coding-intron (ENSMUSG00000041997.16, intron 12 of 19) -15301 ENSMUSG00000041997.16 ENSMUSG00000041997 ENSMUST00000124629 Tlk1 protein_coding Interval_148519 chr7 82067865 82068202 + 0 NA Intergenic Intergenic -2354 ENSMUSG00000109145.1 ENSMUSG00000109145 ENSMUST00000208972 Gm20744 lincRNA Interval_29979 chr11 88512364 88513309 + 0 NA intron (ENSMUSG00000069769.13, intron 1 of 5) protein_coding-intron (ENSMUSG00000069769.13, intron 6 of 13) 77311 ENSMUSG00000069769.13 ENSMUSG00000069769 ENSMUST00000126293 Msi2 protein_coding Interval_74384 chr17 49807137 49808829 + 0 NA intron (ENSMUSG00000023999.14, intron 13 of 22) protein_coding-intron (ENSMUSG00000023999.14, intron 13 of 22) 13842 ENSMUSG00000090012.1 ENSMUSG00000090012 ENSMUST00000159971 Gm16555 antisense Interval_95489 chr2 110138015 110138206 + 0 NA intron (ENSMUSG00000027160.16, intron 2 of 2) protein_coding-intron (ENSMUSG00000027160.16, intron 2 of 2) -58779 ENSMUSG00000085444.1 ENSMUSG00000085444 ENSMUST00000130416 Gm13936 antisense Interval_162616 chr9 6736044 6736898 + 0 NA Intergenic Intergenic -30025 ENSMUSG00000065382.1 ENSMUSG00000065382 ENSMUST00000083448 Gm23097 snRNA Interval_30099 chr11 89165376 89166197 + 0 NA Intergenic Intergenic -29020 ENSMUSG00000089485.1 ENSMUSG00000089485 ENSMUST00000158860 Gm24734 misc_RNA Interval_92965 chr2 69028866 69029174 + 0 NA intron (ENSMUSG00000027035.10, intron 4 of 10) protein_coding-intron (ENSMUSG00000027035.10, intron 4 of 9) 10924 ENSMUSG00000102662.1 ENSMUSG00000102662 ENSMUST00000193253 Gm38377 TEC Interval_129276 chr5 118602022 118602973 + 0 NA promoter-TSS (ENSMUSG00000107286.1) TEC-promoter-TSS (ENSMUSG00000107286.1) -219 ENSMUSG00000107286.1 ENSMUSG00000107286 ENSMUST00000201539 Gm43788 TEC Interval_102146 chr3 18611661 18612278 + 0 NA Intergenic Intergenic -1138 ENSMUSG00000104091.1 ENSMUSG00000104091 ENSMUST00000192198 Gm37317 processed_pseudogene Interval_3126 chr1 53745728 53746404 + 0 NA Intergenic Intergenic 16627 ENSMUSG00000026094.14 ENSMUSG00000026094 ENSMUST00000185920 Stk17b protein_coding Interval_173897 chrX 107858350 107858651 + 0 NA intron (ENSMUSG00000073007.10, intron 3 of 5) protein_coding-intron (ENSMUSG00000073007.10, intron 3 of 5) 41928 ENSMUSG00000073007.10 ENSMUSG00000073007 ENSMUST00000167154 Tent5d protein_coding Interval_75985 chr17 74165905 74166180 + 0 NA Intergenic Intergenic -1468 ENSMUSG00000117031.1 ENSMUSG00000117031 ENSMUST00000233609 Gm49882 processed_pseudogene Interval_58644 chr15 36779342 36780102 + 0 NA intron (ENSMUSG00000022285.17, intron 2 of 3) protein_coding-intron (ENSMUSG00000022285.17, intron 3 of 6) 17207 ENSMUSG00000022285.17 ENSMUSG00000022285 ENSMUST00000227067 Ywhaz protein_coding Interval_52672 chr14 48475388 48476341 + 0 NA intron (ENSMUSG00000036339.18, intron 2 of 4) protein_coding-intron (ENSMUSG00000036339.18, intron 5 of 15) 3542 ENSMUSG00000036339.18 ENSMUSG00000036339 ENSMUST00000226344 Tmem260 protein_coding Interval_78890 chr18 21182983 21183330 + 0 NA intron (ENSMUSG00000042680.8, intron 2 of 4) protein_coding-intron (ENSMUSG00000042680.8, intron 2 of 5) -106047 ENSMUSG00000062962.5 ENSMUSG00000062962 ENSMUST00000084199 Gm6378 processed_pseudogene Interval_140270 chr6 115941162 115941822 + 0 NA Intergenic Intergenic -4966 ENSMUSG00000107548.1 ENSMUSG00000107548 ENSMUST00000203894 Gm43866 TEC Interval_82896 chr18 78523951 78524342 + 0 NA intron (ENSMUSG00000024552.16, intron 2 of 21) protein_coding-intron (ENSMUSG00000024552.16, intron 2 of 11) -9312 ENSMUSG00000095883.1 ENSMUSG00000095883 ENSMUST00000178054 Gm26430 snRNA Interval_171535 chr9 119075018 119076933 + 0 NA exon (ENSMUSG00000010660.3, exon 5 of 15) protein_coding-exon (ENSMUSG00000010660.3, exon 5 of 15) -1672 ENSMUSG00000010660.3 ENSMUSG00000010660 ENSMUST00000214491 Plcd1 protein_coding Interval_48795 chr13 103335904 103336112 + 0 NA Intergenic Intergenic -20244 ENSMUSG00000047643.5 ENSMUSG00000047643 ENSMUST00000052030 Gm5454 processed_pseudogene Interval_16008 chr10 60088937 60089245 + 0 NA intron (ENSMUSG00000044475.14, intron 9 of 10) protein_coding-intron (ENSMUSG00000044475.14, intron 9 of 10) -17377 ENSMUSG00000058297.16 ENSMUSG00000058297 ENSMUST00000165024 Spock2 protein_coding Interval_7007 chr1 121798065 121798948 + 0 NA Intergenic Intergenic 91991 ENSMUSG00000102488.1 ENSMUSG00000102488 ENSMUST00000192952 Gm37920 TEC Interval_137715 chr6 81376195 81376528 + 0 NA Intergenic Intergenic 44897 ENSMUSG00000107691.1 ENSMUSG00000107691 ENSMUST00000203247 Gm43901 processed_pseudogene Interval_141657 chr6 132538682 132538874 + 0 NA Intergenic Intergenic 13745 ENSMUSG00000107632.1 ENSMUSG00000107632 ENSMUST00000203389 Gm44070 TEC Interval_139863 chr6 112024143 112024336 + 0 NA Intergenic Intergenic 24912 ENSMUSG00000088572.1 ENSMUSG00000088572 ENSMUST00000157947 Gm25454 misc_RNA Interval_6478 chr1 111527627 111527853 + 0 NA Intergenic Intergenic -81095 ENSMUSG00000101253.1 ENSMUSG00000101253 ENSMUST00000189363 Gm29088 lincRNA Interval_36460 chr12 45162272 45162844 + 0 NA TTS (ENSMUSG00000112112.1) lincRNA-TTS (ENSMUSG00000112112.1) 53551 ENSMUSG00000088852.1 ENSMUSG00000088852 ENSMUST00000158227 Gm24731 snoRNA Interval_149652 chr7 100423488 100423796 + 0 NA TTS (ENSMUSG00000047248.20) protein_coding-TTS (ENSMUSG00000047248.20) 26611 ENSMUSG00000047248.20 ENSMUSG00000047248 ENSMUST00000208018 C2cd3 protein_coding Interval_145699 chr7 37498258 37499282 + 0 NA intron (ENSMUSG00000043456.17, intron 1 of 3) protein_coding-intron (ENSMUSG00000043456.17, intron 4 of 5) 19084 ENSMUSG00000108330.1 ENSMUSG00000108330 ENSMUST00000205702 Gm44882 TEC Interval_46222 chr13 62689234 62689853 + 0 NA intron (ENSMUSG00000074863.5, intron 3 of 5) protein_coding-intron (ENSMUSG00000074863.5, intron 4 of 6) -7042 ENSMUSG00000113601.1 ENSMUSG00000113601 ENSMUST00000222614 Gm48735 TEC Interval_141423 chr6 128164765 128165290 + 0 NA TTS (ENSMUSG00000108220.1) TEC-TTS (ENSMUSG00000108220.1) 1895 ENSMUSG00000108220.1 ENSMUSG00000108220 ENSMUST00000204623 Gm44056 TEC Interval_172686 chrX 42151900 42152233 + 0 NA promoter-TSS (ENSMUSG00000025862.14) protein_coding-promoter-TSS (ENSMUSG00000025862.14) -1885 ENSMUSG00000104042.1 ENSMUSG00000104042 ENSMUST00000195000 Gm37564 TEC Interval_35718 chr12 28612591 28612978 + 0 NA intron (ENSMUSG00000036655.8, intron 3 of 7) protein_coding-intron (ENSMUSG00000036655.8, intron 3 of 6) 10476 ENSMUSG00000036655.8 ENSMUSG00000036655 ENSMUST00000220836 Colec11 protein_coding Interval_59132 chr15 44515764 44516011 + 0 NA intron (ENSMUSG00000038725.13, intron 26 of 77) protein_coding-intron (ENSMUSG00000038725.13, intron 26 of 76) 58393 ENSMUSG00000038725.13 ENSMUSG00000038725 ENSMUST00000209939 Pkhd1l1 protein_coding Interval_80468 chr18 42429159 42430103 + 0 NA Intergenic Intergenic -11388 ENSMUSG00000056849.6 ENSMUSG00000056849 ENSMUST00000080097 Gm16415 processed_pseudogene Interval_36141 chr12 36298654 36298965 + 0 NA Intergenic Intergenic -15330 ENSMUSG00000036169.6 ENSMUSG00000036169 ENSMUST00000041407 Sostdc1 protein_coding Interval_93475 chr2 73386021 73387073 + 0 NA promoter-TSS (ENSMUSG00000041762.16) protein_coding-promoter-TSS (ENSMUSG00000041762.16) -149 ENSMUSG00000041762.16 ENSMUSG00000041762 ENSMUST00000134595 Gpr155 protein_coding Interval_110961 chr4 10888344 10889724 + 0 NA intron (ENSMUSG00000059482.15, intron 4 of 5) protein_coding-intron (ENSMUSG00000059482.15, intron 4 of 5) 14469 ENSMUSG00000059482.15 ENSMUSG00000059482 ENSMUST00000142026 2610301B20Rik protein_coding Interval_127025 chr5 99678006 99678338 + 0 NA intron (ENSMUSG00000089809.9, intron 1 of 16) protein_coding-intron (ENSMUSG00000089809.9, intron 1 of 1) -4243 ENSMUSG00000089743.7 ENSMUSG00000089743 ENSMUST00000161197 Gm16226 antisense Interval_161128 chr8 117658586 117659240 + 0 NA Intergenic Intergenic 14776 ENSMUSG00000034308.13 ENSMUSG00000034308 ENSMUST00000174450 Sdr42e1 protein_coding Interval_99170 chr2 157736945 157737773 + 0 NA promoter-TSS (ENSMUSG00000027649.15) protein_coding-promoter-TSS (ENSMUSG00000027649.15) 11359 ENSMUSG00000084417.1 ENSMUSG00000084417 ENSMUST00000122468 Gm23463 snRNA Interval_23183 chr11 20396036 20396830 + 0 NA Intergenic Intergenic -49979 ENSMUSG00000083878.3 ENSMUSG00000083878 ENSMUST00000119032 Gm12034 processed_pseudogene Interval_111966 chr4 32871631 32873097 + 0 NA intron (ENSMUSG00000040183.13, intron 1 of 15) protein_coding-intron (ENSMUSG00000040183.13, intron 2 of 16) -11681 ENSMUSG00000040183.13 ENSMUSG00000040183 ENSMUST00000149650 Ankrd6 protein_coding Interval_153213 chr7 142487033 142488016 + 0 NA exon (ENSMUSG00000018819.10, exon 3 of 3) protein_coding-exon (ENSMUSG00000018819.10, exon 3 of 3) 4120 ENSMUSG00000018819.10 ENSMUSG00000018819 ENSMUST00000142408 Lsp1 protein_coding Interval_155134 chr8 26915576 26915795 + 0 NA Intergenic Intergenic -32990 ENSMUSG00000100335.2 ENSMUSG00000100335 ENSMUST00000210263 2310008N11Rik lincRNA Interval_113011 chr4 46839086 46839310 + 0 NA intron (ENSMUSG00000039809.10, intron 2 of 4) protein_coding-intron (ENSMUSG00000039809.10, intron 3 of 18) 20704 ENSMUSG00000039809.10 ENSMUSG00000039809 ENSMUST00000206773 Gabbr2 protein_coding Interval_42738 chr13 18786488 18786671 + 0 NA intron (ENSMUSG00000041236.8, intron 2 of 7) protein_coding-intron (ENSMUSG00000041236.8, intron 5 of 28) 6736 ENSMUSG00000041236.8 ENSMUSG00000041236 ENSMUST00000222102 Vps41 protein_coding Interval_82893 chr18 78464601 78464992 + 0 NA intron (ENSMUSG00000024552.16, intron 2 of 21) protein_coding-intron (ENSMUSG00000024552.16, intron 2 of 11) -12082 ENSMUSG00000117661.1 ENSMUSG00000117661 ENSMUST00000235470 4931439C15Rik antisense Interval_149654 chr7 100428704 100430334 + 0 NA promoter-TSS (ENSMUSG00000047248.20) protein_coding-promoter-TSS (ENSMUSG00000047248.20) -28941 ENSMUSG00000102241.1 ENSMUSG00000102241 ENSMUST00000193553 Gm37716 TEC Interval_148331 chr7 80553939 80555329 + 0 NA Intergenic Intergenic 46847 ENSMUSG00000091989.1 ENSMUSG00000091989 ENSMUST00000166096 Ndufab1-ps processed_pseudogene Interval_27730 chr11 69713015 69713685 + 0 NA Intergenic Intergenic 17234 ENSMUSG00000081333.1 ENSMUSG00000081333 ENSMUST00000120581 Gm12307 processed_pseudogene Interval_126040 chr5 77036870 77037078 + 0 NA promoter-TSS (ENSMUSG00000029248.14) protein_coding-promoter-TSS (ENSMUSG00000029248.14) -80 ENSMUSG00000029248.14 ENSMUSG00000029248 ENSMUST00000118941 Thegl protein_coding Interval_83463 chr18 86043817 86044312 + 0 NA Intergenic Intergenic 53180 ENSMUSG00000117906.1 ENSMUSG00000117906 ENSMUST00000237292 Gm50381 processed_pseudogene Interval_135498 chr6 39667259 39667587 + 0 NA intron (ENSMUSG00000002413.15, intron 3 of 17) protein_coding-intron (ENSMUSG00000002413.15, intron 4 of 21) -2344 ENSMUSG00000002413.15 ENSMUSG00000002413 ENSMUST00000169647 Braf protein_coding Interval_70311 chr17 8404026 8404527 + 0 NA intron (ENSMUSG00000058159.14, intron 6 of 9) protein_coding-intron (ENSMUSG00000058159.14, intron 5 of 10) -19616 ENSMUSG00000116704.1 ENSMUSG00000116704 ENSMUST00000231828 Gm5491 processed_pseudogene Interval_27751 chr11 69781996 69782229 + 0 NA TTS (ENSMUSG00000018750.14) protein_coding-TTS (ENSMUSG00000018750.14) 12158 ENSMUSG00000041189.9 ENSMUSG00000041189 ENSMUST00000147791 Chrnb1 protein_coding Interval_105271 chr3 84419234 84419452 + 0 NA Intergenic Intergenic -39422 ENSMUSG00000104004.1 ENSMUSG00000104004 ENSMUST00000192777 4930565D16Rik lincRNA Interval_5234 chr1 86618174 86618866 + 0 NA Intergenic Intergenic 19088 ENSMUSG00000084468.1 ENSMUSG00000084468 ENSMUST00000122519 Gm22955 miRNA Interval_12668 chr10 4236818 4237665 + 0 NA Intergenic Intergenic -24127 ENSMUSG00000111266.1 ENSMUSG00000111266 ENSMUST00000213553 Gm30570 lincRNA Interval_49530 chr13 112758027 112760615 + 0 NA Intergenic Intergenic -5527 ENSMUSG00000114286.1 ENSMUSG00000114286 ENSMUST00000225832 Gm47850 lincRNA Interval_153314 chr7 143557044 143557290 + 0 NA TTS (ENSMUSG00000010755.17) protein_coding-TTS (ENSMUSG00000010755.17) 7848 ENSMUSG00000010755.17 ENSMUSG00000010755 ENSMUST00000207168 Cars protein_coding Interval_13553 chr10 19483346 19483576 + 0 NA Intergenic Intergenic -11182 ENSMUSG00000110902.1 ENSMUSG00000110902 ENSMUST00000216664 Gm33104 lincRNA Interval_55149 chr14 78668399 78669080 + 0 NA intron (ENSMUSG00000034731.11, intron 2 of 29) protein_coding-intron (ENSMUSG00000034731.11, intron 1 of 28) -35071 ENSMUSG00000115107.1 ENSMUSG00000115107 ENSMUST00000228480 Gm18368 processed_pseudogene Interval_104441 chr3 65689492 65690051 + 0 NA intron (ENSMUSG00000074579.14, intron 3 of 12) protein_coding-intron (ENSMUSG00000074579.14, intron 3 of 6) 11385 ENSMUSG00000104037.1 ENSMUSG00000104037 ENSMUST00000193471 Gm37776 TEC Interval_84137 chr19 7447997 7448360 + 0 NA intron (ENSMUSG00000024758.15, intron 1 of 6) protein_coding-intron (ENSMUSG00000024758.15, intron 2 of 7) 25605 ENSMUSG00000098293.1 ENSMUSG00000098293 ENSMUST00000183837 Mir6991 miRNA Interval_172602 chrX 38143489 38144312 + 0 NA Intergenic Intergenic 22681 ENSMUSG00000050197.5 ENSMUSG00000050197 ENSMUST00000152730 Rhox13 protein_coding Interval_168805 chr9 87247750 87249284 + 0 NA intron (ENSMUSG00000056919.9, intron 2 of 11) protein_coding-intron (ENSMUSG00000056919.9, intron 2 of 26) -20559 ENSMUSG00000056919.9 ENSMUSG00000056919 ENSMUST00000144137 Cep162 protein_coding Interval_44522 chr13 45647275 45647616 + 0 NA intron (ENSMUSG00000046876.16, intron 5 of 6) protein_coding-intron (ENSMUSG00000046876.16, intron 6 of 7) 101292 ENSMUSG00000000253.13 ENSMUSG00000000253 ENSMUST00000222227 Gmpr protein_coding Interval_151785 chr7 126648613 126649991 + 0 NA promoter-TSS (ENSMUSG00000030714.14) protein_coding-promoter-TSS (ENSMUSG00000030714.14) 292 ENSMUSG00000066175.2 ENSMUSG00000066175 ENSMUST00000084587 2510046G10Rik antisense Interval_165934 chr9 54772670 54773322 + 0 NA exon (ENSMUSG00000032291.8, exon 4 of 4) protein_coding-exon (ENSMUSG00000032291.8, exon 4 of 4) 8248 ENSMUSG00000032291.8 ENSMUSG00000032291 ENSMUST00000034830 Crabp1 protein_coding Interval_26105 chr11 54309205 54310142 + 0 NA intron (ENSMUSG00000020333.17, intron 1 of 20) protein_coding-intron (ENSMUSG00000020333.17, intron 1 of 19) -10479 ENSMUSG00000020333.17 ENSMUSG00000020333 ENSMUST00000139484 Acsl6 protein_coding Interval_50945 chr14 20970649 20970880 + 0 NA intron (ENSMUSG00000021823.10, intron 2 of 7) protein_coding-intron (ENSMUSG00000021823.10, intron 2 of 20) 41366 ENSMUSG00000021823.10 ENSMUSG00000021823 ENSMUST00000224380 Vcl protein_coding Interval_146529 chr7 46665199 46665674 + 0 NA promoter-TSS (ENSMUSG00000040046.14) protein_coding-promoter-TSS (ENSMUSG00000040046.14) -148 ENSMUSG00000040046.14 ENSMUSG00000040046 ENSMUST00000168335 Tph1 protein_coding Interval_41864 chr13 3641809 3642800 + 0 NA exon (ENSMUSG00000033781.7, exon 2 of 2) protein_coding-exon (ENSMUSG00000033781.7, exon 2 of 2) -6233 ENSMUSG00000088475.1 ENSMUSG00000088475 ENSMUST00000157850 Gm23084 rRNA Interval_77593 chr17 92646167 92646433 + 0 NA Intergenic Intergenic -45774 ENSMUSG00000117354.1 ENSMUSG00000117354 ENSMUST00000234942 Gm49995 processed_pseudogene Interval_5905 chr1 93128649 93129153 + 0 NA Intergenic Intergenic -4798 ENSMUSG00000101378.1 ENSMUSG00000101378 ENSMUST00000191586 Gm28086 lincRNA Interval_170257 chr9 106491584 106491981 + 0 NA Intergenic Intergenic -8219 ENSMUSG00000066383.7 ENSMUSG00000066383 ENSMUST00000215037 Iqcf1 protein_coding Interval_88142 chr19 59520591 59520807 + 0 NA intron (ENSMUSG00000100119.1, intron 2 of 4) lincRNA-intron (ENSMUSG00000100119.1, intron 2 of 4) -19752 ENSMUSG00000118118.1 ENSMUSG00000118118 ENSMUST00000238140 Gm18161 processed_pseudogene Interval_54243 chr14 66826392 66826639 + 0 NA intron (ENSMUSG00000022048.8, intron 7 of 13) protein_coding-intron (ENSMUSG00000022048.8, intron 7 of 13) -28137 ENSMUSG00000114829.1 ENSMUSG00000114829 ENSMUST00000223821 Gm9130 processed_pseudogene Interval_171745 chr9 120675117 120675947 + 0 NA promoter-TSS (ENSMUSG00000111533.1) processed_transcript-promoter-TSS (ENSMUSG00000111533.1) 1127 ENSMUSG00000111533.1 ENSMUSG00000111533 ENSMUST00000214671 Gm39458 processed_transcript Interval_44481 chr13 45241794 45243038 + 0 NA intron (ENSMUSG00000113772.1, intron 3 of 4) lincRNA-intron (ENSMUSG00000113772.1, intron 2 of 2) 6005 ENSMUSG00000113772.1 ENSMUSG00000113772 ENSMUST00000222925 Gm47448 lincRNA Interval_71647 chr17 25124003 25124599 + 0 NA intron (ENSMUSG00000044172.7, intron 3 of 3) protein_coding-intron (ENSMUSG00000044172.7, intron 2 of 2) 3373 ENSMUSG00000044172.7 ENSMUSG00000044172 ENSMUST00000233641 Ptx4 protein_coding Interval_16904 chr10 69670768 69671743 + 0 NA intron (ENSMUSG00000069601.14, intron 2 of 2) protein_coding-intron (ENSMUSG00000069601.14, intron 1 of 16) -104894 ENSMUSG00000112729.1 ENSMUSG00000112729 ENSMUST00000220152 Gm46231 processed_pseudogene Interval_38237 chr12 76570085 76571816 + 0 NA promoter-TSS (ENSMUSG00000052609.9) protein_coding-promoter-TSS (ENSMUSG00000052609.9) 13136 ENSMUSG00000021061.15 ENSMUSG00000021061 ENSMUST00000166101 Sptb protein_coding Interval_97305 chr2 133431217 133432906 + 0 NA promoter-TSS (ENSMUSG00000086650.1) lincRNA-promoter-TSS (ENSMUSG00000086650.1) -34 ENSMUSG00000086650.1 ENSMUSG00000086650 ENSMUST00000149965 A430048G15Rik lincRNA Interval_130744 chr5 130089354 130089901 + 0 NA intron (ENSMUSG00000034118.15, intron 1 of 5) protein_coding-intron (ENSMUSG00000034118.15, intron 1 of 5) -3962 ENSMUSG00000034118.15 ENSMUSG00000034118 ENSMUST00000128335 Tpst1 protein_coding Interval_140024 chr6 113487256 113487507 + 0 NA promoter-TSS (ENSMUSG00000030284.11) protein_coding-promoter-TSS (ENSMUSG00000030284.11) -4636 ENSMUSG00000030284.11 ENSMUSG00000030284 ENSMUST00000129125 Creld1 protein_coding Interval_174612 chrX 160118986 160119165 + 0 NA intron (ENSMUSG00000031303.8, intron 24 of 28) protein_coding-intron (ENSMUSG00000031303.8, intron 24 of 28) 9890 ENSMUSG00000031299.10 ENSMUSG00000031299 ENSMUST00000127535 Pdha1 protein_coding Interval_7954 chr1 134799073 134799936 + 0 NA TTS (ENSMUSG00000103614.1) TEC-TTS (ENSMUSG00000103614.1) 2481 ENSMUSG00000103614.1 ENSMUSG00000103614 ENSMUST00000192808 Gm37949 TEC Interval_59856 chr15 59828253 59828890 + 0 NA Intergenic Intergenic -33612 ENSMUSG00000115426.1 ENSMUSG00000115426 ENSMUST00000228865 Gm19510 lincRNA Interval_172499 chrX 21670869 21671140 + 0 NA Intergenic Intergenic -43892 ENSMUSG00000031089.7 ENSMUSG00000031089 ENSMUST00000033414 Slc6a14 protein_coding Interval_41109 chr12 111249026 111249251 + 0 NA intron (ENSMUSG00000021277.16, intron 6 of 9) protein_coding-intron (ENSMUSG00000021277.16, intron 7 of 11) 655 ENSMUSG00000021277.16 ENSMUSG00000021277 ENSMUST00000143395 Traf3 protein_coding Interval_25378 chr11 46910589 46911467 + 0 NA intron (ENSMUSG00000020354.15, intron 6 of 6) protein_coding-intron (ENSMUSG00000020354.15, intron 6 of 6) 36615 ENSMUSG00000082818.1 ENSMUSG00000082818 ENSMUST00000122081 Gm12175 processed_pseudogene Interval_23409 chr11 22383416 22384123 + 0 NA Intergenic Intergenic -2523 ENSMUSG00000083580.1 ENSMUSG00000083580 ENSMUST00000117789 Rpsa-ps3 processed_pseudogene Interval_167751 chr9 72511945 72513006 + 0 NA Intergenic Intergenic -1141 ENSMUSG00000095555.2 ENSMUSG00000095555 ENSMUST00000179485 Gm28010 miRNA Interval_129236 chr5 118368879 118369077 + 0 NA Intergenic Intergenic 28352 ENSMUSG00000106812.1 ENSMUSG00000106812 ENSMUST00000201179 Gm28563 lincRNA Interval_99443 chr2 161166210 161167771 + 0 NA Intergenic Intergenic -12074 ENSMUSG00000067745.4 ENSMUSG00000067745 ENSMUST00000131401 Gm14243 lincRNA Interval_125137 chr5 64808953 64809574 + 0 NA intron (ENSMUSG00000029178.14, intron 1 of 3) protein_coding-intron (ENSMUSG00000029178.14, intron 1 of 5) 5249 ENSMUSG00000106205.1 ENSMUSG00000106205 ENSMUST00000198074 C230096K16Rik TEC Interval_172871 chrX 52603272 52603608 + 0 NA intron (ENSMUSG00000055110.8, intron 4 of 4) antisense-intron (ENSMUSG00000055110.8, intron 4 of 4) 10510 ENSMUSG00000055653.13 ENSMUSG00000055653 ENSMUST00000114857 Gpc3 protein_coding Interval_28931 chr11 79347878 79348104 + 0 NA intron (ENSMUSG00000020716.16, intron 1 of 30) protein_coding-intron (ENSMUSG00000020716.16, intron 1 of 57) 8199 ENSMUSG00000020716.16 ENSMUSG00000020716 ENSMUST00000137997 Nf1 protein_coding Interval_135307 chr6 38207082 38207562 + 0 NA intron (ENSMUSG00000063455.16, intron 1 of 19) protein_coding-intron (ENSMUSG00000063455.16, intron 1 of 19) 46687 ENSMUSG00000063455.16 ENSMUSG00000063455 ENSMUST00000152464 D630045J12Rik protein_coding Interval_170136 chr9 105410750 105410994 + 0 NA TTS (ENSMUSG00000032570.17) protein_coding-TTS (ENSMUSG00000032570.17) 7476 ENSMUSG00000032567.16 ENSMUSG00000032567 ENSMUST00000190934 Aste1 protein_coding Interval_54223 chr14 66527106 66527471 + 0 NA Intergenic Intergenic 64407 ENSMUSG00000088737.1 ENSMUSG00000088737 ENSMUST00000158112 Gm23899 rRNA Interval_124063 chr5 37952119 37952582 + 0 NA Intergenic Intergenic -31343 ENSMUSG00000107126.1 ENSMUSG00000107126 ENSMUST00000201470 Gm40289 lincRNA Interval_1647 chr1 30771611 30772180 + 0 NA TTS (ENSMUSG00000100261.1) unprocessed_pseudogene-TTS (ENSMUSG00000100261.1) 2208 ENSMUSG00000100261.1 ENSMUSG00000100261 ENSMUST00000188572 Gm6473 unprocessed_pseudogene Interval_171840 chr9 121671348 121671787 + 0 NA exon (ENSMUSG00000032528.5, exon 13 of 13) protein_coding-exon (ENSMUSG00000032528.5, exon 13 of 13) 21475 ENSMUSG00000061536.13 ENSMUSG00000061536 ENSMUST00000214595 Sec22c protein_coding Interval_49114 chr13 108157931 108159201 + 0 NA promoter-TSS (ENSMUSG00000021694.18) protein_coding-promoter-TSS (ENSMUSG00000021694.18) -82 ENSMUSG00000068184.7 ENSMUSG00000068184 ENSMUST00000225830 Ndufaf2 protein_coding Interval_50205 chr14 9671464 9673177 + 0 NA intron (ENSMUSG00000060579.13, intron 4 of 5) protein_coding-intron (ENSMUSG00000060579.13, intron 8 of 9) -190782 ENSMUSG00000089795.1 ENSMUSG00000089795 ENSMUST00000162465 Hmgb3-ps processed_pseudogene Interval_70115 chr17 5428503 5430069 + 0 NA intron (ENSMUSG00000004945.15, intron 3 of 3) protein_coding-intron (ENSMUSG00000004945.15, intron 3 of 3) 7822 ENSMUSG00000095747.1 ENSMUSG00000095747 ENSMUST00000175169 Gm22475 miRNA Interval_156051 chr8 43237210 43237528 + 0 NA Intergenic Intergenic 37401 ENSMUSG00000109974.1 ENSMUSG00000109974 ENSMUST00000209342 Gm2221 processed_pseudogene Interval_173870 chrX 106397694 106398219 + 0 NA Intergenic Intergenic -13885 ENSMUSG00000081778.1 ENSMUSG00000081778 ENSMUST00000122015 Gm6325 unprocessed_pseudogene Interval_28184 chr11 73754235 73754453 + 0 NA Intergenic Intergenic -1693 ENSMUSG00000088811.1 ENSMUSG00000088811 ENSMUST00000158186 Gm22381 snRNA Interval_164638 chr9 40226167 40226969 + 0 NA Intergenic Intergenic 34239 ENSMUSG00000025602.13 ENSMUSG00000025602 ENSMUST00000168832 Zfp202 protein_coding Interval_122228 chr5 20447501 20447810 + 0 NA intron (ENSMUSG00000040003.18, intron 5 of 15) protein_coding-intron (ENSMUSG00000040003.18, intron 9 of 22) -140941 ENSMUSG00000106240.1 ENSMUSG00000106240 ENSMUST00000196129 Gm3544 processed_pseudogene Interval_141044 chr6 124601925 124602582 + 0 NA Intergenic Intergenic 31959 ENSMUSG00000098470.1 ENSMUSG00000098470 ENSMUST00000184647 C1rb protein_coding Interval_80564 chr18 44282241 44282409 + 0 NA Intergenic Intergenic 12198 ENSMUSG00000038071.3 ENSMUSG00000038071 ENSMUST00000042747 Npy6r protein_coding Interval_93101 chr2 70209264 70211081 + 0 NA intron (ENSMUSG00000042064.13, intron 8 of 33) protein_coding-intron (ENSMUSG00000042064.13, intron 9 of 34) 127098 ENSMUSG00000042064.13 ENSMUSG00000042064 ENSMUST00000112241 Myo3b protein_coding Interval_53991 chr14 64158320 64159496 + 0 NA intron (ENSMUSG00000054733.9, intron 5 of 5) protein_coding-intron (ENSMUSG00000054733.9, intron 10 of 10) 42594 ENSMUSG00000114284.1 ENSMUSG00000114284 ENSMUST00000225122 9630015K15Rik antisense Interval_40772 chr12 108274575 108276222 + 0 NA promoter-TSS (ENSMUSG00000084883.2) protein_coding-promoter-TSS (ENSMUSG00000084883.2) 27 ENSMUSG00000084883.2 ENSMUSG00000084883 ENSMUST00000136175 Ccdc85c protein_coding Interval_162750 chr9 8442119 8443239 + 0 NA Intergenic Intergenic -33594 ENSMUSG00000110828.1 ENSMUSG00000110828 ENSMUST00000216605 Gm47517 processed_pseudogene Interval_15813 chr10 57485924 57487408 + 0 NA promoter-TSS (ENSMUSG00000097370.2) lincRNA-promoter-TSS (ENSMUSG00000097370.2) 281 ENSMUSG00000019878.8 ENSMUSG00000019878 ENSMUST00000220162 Hsf2 protein_coding Interval_118943 chr4 134591730 134591929 + 0 NA intron (ENSMUSG00000037306.13, intron 3 of 8) protein_coding-intron (ENSMUSG00000037306.13, intron 4 of 12) -23978 ENSMUSG00000099289.1 ENSMUSG00000099289 ENSMUST00000185007 Mir6403 miRNA Interval_38436 chr12 79022831 79023368 + 0 NA Intergenic Intergenic -12537 ENSMUSG00000060716.7 ENSMUSG00000060716 ENSMUST00000219946 Plekhh1 protein_coding Interval_163367 chr9 21100441 21100759 + 0 NA intron (ENSMUSG00000086016.1, intron 1 of 1) antisense-intron (ENSMUSG00000086016.1, intron 1 of 1) -8592 ENSMUSG00000010205.11 ENSMUSG00000010205 ENSMUST00000115487 Raver1 protein_coding Interval_82113 chr18 67809125 67809388 + 0 NA intron (ENSMUSG00000024542.9, intron 5 of 15) protein_coding-intron (ENSMUSG00000024542.9, intron 5 of 45) -9313 ENSMUSG00000118134.1 ENSMUSG00000118134 ENSMUST00000237968 4930549G23Rik antisense Interval_45774 chr13 57985655 57986737 + 0 NA Intergenic Intergenic 37004 ENSMUSG00000077962.1 ENSMUSG00000077962 ENSMUST00000104769 Mir874 miRNA Interval_127469 chr5 104164593 104165945 + 0 NA Intergenic Intergenic -5443 ENSMUSG00000053268.7 ENSMUSG00000053268 ENSMUST00000112771 Dspp protein_coding Interval_104151 chr3 59120274 59121907 + 0 NA intron (ENSMUSG00000036381.13, intron 1 of 2) protein_coding-intron (ENSMUSG00000056476.13, intron 14 of 42) 11372 ENSMUSG00000036381.13 ENSMUSG00000036381 ENSMUST00000196716 P2ry14 protein_coding Interval_73501 chr17 38125512 38125987 + 0 NA Intergenic Intergenic 8777 ENSMUSG00000067186.2 ENSMUSG00000067186 ENSMUST00000087128 Olfr132 protein_coding Interval_25116 chr11 44260652 44260871 + 0 NA Intergenic Intergenic 6448 ENSMUSG00000086738.1 ENSMUSG00000086738 ENSMUST00000145584 Gm12154 lincRNA Interval_47030 chr13 74475804 74477821 + 0 NA TTS (ENSMUSG00000116765.1) lincRNA-TTS (ENSMUSG00000116765.1) 2169 ENSMUSG00000116765.1 ENSMUSG00000116765 ENSMUST00000231729 Gm49762 lincRNA Interval_75571 chr17 68237349 68237623 + 0 NA Intergenic Intergenic -49750 ENSMUSG00000117193.1 ENSMUSG00000117193 ENSMUST00000233387 Gm36252 lincRNA Interval_24611 chr11 35224274 35224627 + 0 NA intron (ENSMUSG00000056427.10, intron 2 of 2) protein_coding-intron (ENSMUSG00000056427.10, intron 3 of 35) 10049 ENSMUSG00000088125.1 ENSMUSG00000088125 ENSMUST00000157500 Gm26070 snoRNA Interval_165924 chr9 54713595 54713916 + 0 NA TTS (ENSMUSG00000061559.15) protein_coding-TTS (ENSMUSG00000061559.15) 5442 ENSMUSG00000093441.1 ENSMUSG00000093441 ENSMUST00000176884 Mir5710 miRNA Interval_145079 chr7 29921298 29922173 + 0 NA Intergenic Intergenic -5243 ENSMUSG00000109105.1 ENSMUSG00000109105 ENSMUST00000208490 Gm44873 TEC Interval_141459 chr6 128399480 128400441 + 0 NA promoter-TSS (ENSMUSG00000001520.12) protein_coding-promoter-TSS (ENSMUSG00000001520.12) -220 ENSMUSG00000085739.1 ENSMUSG00000085739 ENSMUST00000146349 Gm15862 antisense Interval_91350 chr2 38052469 38054498 + 0 NA intron (ENSMUSG00000035392.17, intron 4 of 5) protein_coding-intron (ENSMUSG00000035392.17, intron 5 of 21) 27688 ENSMUSG00000108155.1 ENSMUSG00000108155 ENSMUST00000204396 Gm44443 TEC Interval_62017 chr15 85903802 85904715 + 0 NA promoter-TSS (ENSMUSG00000016028.11) protein_coding-promoter-TSS (ENSMUSG00000016028.11) -2059 ENSMUSG00000016028.11 ENSMUSG00000016028 ENSMUST00000227450 Celsr1 protein_coding Interval_73873 chr17 45073417 45074740 + 0 NA intron (ENSMUSG00000038954.14, intron 11 of 11) protein_coding-intron (ENSMUSG00000038954.14, intron 11 of 11) -73159 ENSMUSG00000117044.1 ENSMUSG00000117044 ENSMUST00000233532 Gm35097 lincRNA Interval_116408 chr4 111596974 111597390 + 0 NA intron (ENSMUSG00000061298.14, intron 1 of 3) protein_coding-intron (ENSMUSG00000061298.14, intron 9 of 12) 30487 ENSMUSG00000061298.14 ENSMUSG00000061298 ENSMUST00000142460 Agbl4 protein_coding Interval_133704 chr6 8997305 8997532 + 0 NA intron (ENSMUSG00000046178.3, intron 2 of 2) protein_coding-intron (ENSMUSG00000046178.3, intron 1 of 1) 48987 ENSMUSG00000046178.3 ENSMUSG00000046178 ENSMUST00000060369 Nxph1 protein_coding Interval_73290 chr17 35996884 35998291 + 0 NA intron (ENSMUSG00000092368.1, intron 1 of 1) antisense-intron (ENSMUSG00000092368.1, intron 1 of 1) 3134 ENSMUSG00000092368.1 ENSMUSG00000092368 ENSMUST00000173900 A930015D03Rik antisense Interval_68934 chr16 89313079 89313411 + 0 NA Intergenic Intergenic 90623 ENSMUSG00000058368.3 ENSMUSG00000058368 ENSMUST00000078422 Krtap21-1 protein_coding Interval_137032 chr6 66703031 66703476 + 0 NA Intergenic Intergenic -8438 ENSMUSG00000107591.1 ENSMUSG00000107591 ENSMUST00000203829 Gm6794 processed_pseudogene Interval_120456 chr4 148738229 148739474 + 0 NA Intergenic Intergenic 25148 ENSMUSG00000087273.1 ENSMUSG00000087273 ENSMUST00000139895 Gm13203 lincRNA Interval_100394 chr2 168785872 168786354 + 0 NA Intergenic Intergenic 19970 ENSMUSG00000085322.2 ENSMUSG00000085322 ENSMUST00000145105 Gm14261 antisense Interval_50924 chr14 20785060 20785698 + 0 NA intron (ENSMUSG00000021820.18, intron 2 of 21) protein_coding-intron (ENSMUSG00000021820.18, intron 2 of 20) 8587 ENSMUSG00000021820.18 ENSMUSG00000021820 ENSMUST00000225635 Camk2g protein_coding Interval_73057 chr17 34527648 34528120 + 0 NA Intergenic Intergenic -5980 ENSMUSG00000083441.1 ENSMUSG00000083441 ENSMUST00000121408 Gm15329 unprocessed_pseudogene Interval_29458 chr11 84116033 84116796 + 0 NA intron (ENSMUSG00000018651.14, intron 4 of 15) protein_coding-intron (ENSMUSG00000018651.14, intron 4 of 15) -13286 ENSMUSG00000020532.18 ENSMUSG00000020532 ENSMUST00000183887 Acaca protein_coding Interval_151256 chr7 120325666 120328280 + 0 NA Intergenic Intergenic -1697 ENSMUSG00000054746.18 ENSMUSG00000054746 ENSMUST00000076272 Abca15 protein_coding Interval_66638 chr16 35787884 35788451 + 0 NA intron (ENSMUSG00000022849.5, intron 2 of 2) protein_coding-intron (ENSMUSG00000022849.5, intron 2 of 8) 17760 ENSMUSG00000022849.5 ENSMUSG00000022849 ENSMUST00000023555 Hspbap1 protein_coding Interval_20744 chr10 120696726 120697780 + 0 NA intron (ENSMUSG00000112716.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000112716.1, intron 1 of 2) 1950 ENSMUSG00000112716.1 ENSMUSG00000112716 ENSMUST00000219022 4930471E19Rik lincRNA Interval_45333 chr13 54503307 54505104 + 0 NA intron (ENSMUSG00000043183.18, intron 1 of 2) protein_coding-intron (ENSMUSG00000043183.18, intron 1 of 8) 401 ENSMUSG00000043183.18 ENSMUSG00000043183 ENSMUST00000126506 Simc1 protein_coding Interval_39218 chr12 85949043 85950233 + 0 NA intron (ENSMUSG00000012609.19, intron 3 of 6) protein_coding-intron (ENSMUSG00000012609.19, intron 28 of 33) -12363 ENSMUSG00000012609.19 ENSMUSG00000012609 ENSMUST00000220906 Ttll5 protein_coding Interval_172084 chrX 6753027 6754026 + 0 NA Intergenic Intergenic -119958 ENSMUSG00000062393.13 ENSMUSG00000062393 ENSMUST00000145302 Dgkk protein_coding Interval_40171 chr12 102261620 102262531 + 0 NA intron (ENSMUSG00000041771.14, intron 14 of 16) protein_coding-intron (ENSMUSG00000041771.14, intron 14 of 16) -8388 ENSMUSG00000064776.2 ENSMUSG00000064776 ENSMUST00000082842 Gm25203 snoRNA Interval_170975 chr9 113429842 113431084 + 0 NA Intergenic Intergenic 10352 ENSMUSG00000111199.1 ENSMUSG00000111199 ENSMUST00000216389 Gm47875 lincRNA Interval_31725 chr11 102480279 102481037 + 0 NA exon (ENSMUSG00000034621.14, exon 6 of 6) protein_coding-exon (ENSMUSG00000034621.14, exon 6 of 6) 11951 ENSMUSG00000082487.1 ENSMUSG00000082487 ENSMUST00000117568 Gm11628 processed_pseudogene Interval_55202 chr14 79299634 79301951 + 0 NA exon (ENSMUSG00000022018.7, exon 2 of 5) protein_coding-exon (ENSMUSG00000022018.7, exon 2 of 5) 853 ENSMUSG00000022018.7 ENSMUSG00000022018 ENSMUST00000022595 Rgcc protein_coding Interval_77397 chr17 88439760 88442057 + 0 NA intron (ENSMUSG00000034998.18, intron 1 of 6) protein_coding-intron (ENSMUSG00000034998.18, intron 1 of 5) 173 ENSMUSG00000034998.18 ENSMUSG00000034998 ENSMUST00000141052 Foxn2 protein_coding Interval_74274 chr17 47825024 47825363 + 0 NA intron (ENSMUSG00000032717.14, intron 1 of 2) protein_coding-intron (ENSMUSG00000032717.14, intron 2 of 4) 8079 ENSMUSG00000032717.14 ENSMUSG00000032717 ENSMUST00000129360 Mdfi protein_coding Interval_69903 chr17 3089330 3089726 + 0 NA Intergenic Intergenic -5488 ENSMUSG00000023795.16 ENSMUSG00000023795 ENSMUST00000127960 Pisd-ps2 transcribed_unprocessed_pseudogene Interval_115131 chr4 91304053 91305498 + 0 NA intron (ENSMUSG00000008489.18, intron 2 of 3) protein_coding-intron (ENSMUSG00000008489.18, intron 2 of 6) 51907 ENSMUSG00000008489.18 ENSMUSG00000008489 ENSMUST00000176151 Elavl2 protein_coding Interval_128555 chr5 113992467 113994583 + 0 NA intron (ENSMUSG00000042121.16, intron 1 of 3) protein_coding-intron (ENSMUSG00000042121.16, intron 1 of 13) -16366 ENSMUSG00000042096.15 ENSMUSG00000042096 ENSMUST00000162214 Dao protein_coding Interval_66378 chr16 33481254 33481648 + 0 NA intron (ENSMUSG00000022811.17, intron 6 of 7) protein_coding-intron (ENSMUSG00000022811.17, intron 7 of 8) 100588 ENSMUSG00000022811.17 ENSMUSG00000022811 ENSMUST00000089677 Zfp148 protein_coding Interval_101915 chr3 11198477 11198919 + 0 NA Intergenic Intergenic 44361 ENSMUSG00000095289.1 ENSMUSG00000095289 ENSMUST00000175281 Gm22547 miRNA Interval_53172 chr14 54905729 54905973 + 0 NA TTS (ENSMUSG00000022199.12) protein_coding-TTS (ENSMUSG00000022199.12) 7281 ENSMUSG00000022199.12 ENSMUSG00000022199 ENSMUST00000226456 Slc22a17 protein_coding Interval_130779 chr5 130334925 130335151 + 0 NA intron (ENSMUSG00000056310.14, intron 14 of 15) protein_coding-intron (ENSMUSG00000056310.14, intron 14 of 15) 49592 ENSMUSG00000052014.6 ENSMUSG00000052014 ENSMUST00000063656 A330070K13Rik protein_coding Interval_57299 chr15 8596836 8597073 + 0 NA Intergenic Intergenic 58119 ENSMUSG00000103047.1 ENSMUSG00000103047 ENSMUST00000195237 Gm37310 TEC Interval_147092 chr7 62452479 62452831 + 0 NA Intergenic Intergenic 11855 ENSMUSG00000070526.2 ENSMUSG00000070526 ENSMUST00000094339 Peg12 protein_coding Interval_133744 chr6 11040685 11041081 + 0 NA Intergenic Intergenic -66505 ENSMUSG00000107948.2 ENSMUSG00000107948 ENSMUST00000205141 AA545190 lincRNA Interval_172431 chrX 19346745 19347017 + 0 NA Intergenic Intergenic -8120 ENSMUSG00000077277.1 ENSMUSG00000077277 ENSMUST00000104089 Gm22783 snRNA Interval_142723 chr6 145164404 145165003 + 0 NA intron (ENSMUSG00000030263.13, intron 11 of 12) protein_coding-intron (ENSMUSG00000030263.13, intron 11 of 18) -17572 ENSMUSG00000086863.1 ENSMUSG00000086863 ENSMUST00000141307 Gm15543 antisense Interval_169800 chr9 101570669 101570949 + 0 NA Intergenic Intergenic -121456 ENSMUSG00000061486.7 ENSMUSG00000061486 ENSMUST00000075243 Gm5161 processed_pseudogene Interval_117689 chr4 125563677 125564539 + 0 NA intron (ENSMUSG00000001985.9, intron 1 of 15) protein_coding-intron (ENSMUSG00000001985.9, intron 1 of 15) 59359 ENSMUSG00000094403.1 ENSMUSG00000094403 ENSMUST00000102081 Mir692-2 miRNA Interval_43708 chr13 35548505 35548713 + 0 NA Intergenic Intergenic 4707 ENSMUSG00000114337.1 ENSMUSG00000114337 ENSMUST00000225154 Gm48704 lincRNA Interval_136312 chr6 52918676 52919457 + 0 NA intron (ENSMUSG00000063568.11, intron 1 of 4) protein_coding-intron (ENSMUSG00000063568.11, intron 1 of 4) -9446 ENSMUSG00000063568.11 ENSMUSG00000063568 ENSMUST00000074541 Jazf1 protein_coding Interval_164323 chr9 35342164 35343001 + 0 NA Intergenic Intergenic 20531 ENSMUSG00000103259.1 ENSMUSG00000103259 ENSMUST00000193707 2610105M22Rik TEC Interval_75351 chr17 66066591 66067399 + 0 NA intron (ENSMUSG00000034647.15, intron 1 of 8) protein_coding-intron (ENSMUSG00000034647.15, intron 1 of 12) -19099 ENSMUSG00000094158.1 ENSMUSG00000094158 ENSMUST00000083372 Gm23264 snRNA Interval_48418 chr13 98904235 98905346 + 0 NA TTS (ENSMUSG00000062461.7) processed_pseudogene-TTS (ENSMUSG00000062461.7) 566 ENSMUSG00000062461.7 ENSMUSG00000062461 ENSMUST00000080866 Rpl27a-ps4 processed_pseudogene Interval_96710 chr2 127313900 127315093 + 0 NA Intergenic Intergenic -22114 ENSMUSG00000027368.6 ENSMUSG00000027368 ENSMUST00000146479 Dusp2 protein_coding Interval_75522 chr17 67749624 67750230 + 0 NA intron (ENSMUSG00000032796.8, intron 11 of 15) protein_coding-intron (ENSMUSG00000032796.8, intron 11 of 62) 52662 ENSMUSG00000032796.8 ENSMUSG00000032796 ENSMUST00000233224 Lama1 protein_coding Interval_2595 chr1 41263961 41264815 + 0 NA Intergenic Intergenic -83136 ENSMUSG00000104072.1 ENSMUSG00000104072 ENSMUST00000194002 4930448I06Rik lincRNA Interval_125510 chr5 67815449 67816205 + 0 NA promoter-TSS (ENSMUSG00000037685.15) protein_coding-promoter-TSS (ENSMUSG00000037685.15) -7091 ENSMUSG00000037685.15 ENSMUSG00000037685 ENSMUST00000141443 Atp8a1 protein_coding Interval_122608 chr5 24175655 24177088 + 0 NA intron (ENSMUSG00000048439.15, intron 4 of 6) protein_coding-intron (ENSMUSG00000048439.15, intron 4 of 6) 8863 ENSMUSG00000048439.15 ENSMUSG00000048439 ENSMUST00000124150 Nupl2 protein_coding Interval_114427 chr4 76062306 76062580 + 0 NA intron (ENSMUSG00000028399.18, intron 3 of 7) protein_coding-intron (ENSMUSG00000028399.18, intron 15 of 29) 22014 ENSMUSG00000028399.18 ENSMUSG00000028399 ENSMUST00000134604 Ptprd protein_coding Interval_73871 chr17 45052390 45053124 + 0 NA intron (ENSMUSG00000038954.14, intron 11 of 11) protein_coding-intron (ENSMUSG00000038954.14, intron 11 of 11) -94480 ENSMUSG00000117044.1 ENSMUSG00000117044 ENSMUST00000233532 Gm35097 lincRNA Interval_94606 chr2 92608676 92609398 + 0 NA intron (ENSMUSG00000027221.5, intron 1 of 2) protein_coding-intron (ENSMUSG00000027221.5, intron 1 of 2) 9330 ENSMUSG00000027221.5 ENSMUSG00000027221 ENSMUST00000065797 Chst1 protein_coding Interval_68507 chr16 78283435 78283955 + 0 NA intron (ENSMUSG00000109841.2, intron 1 of 2) processed_transcript-intron (ENSMUSG00000109841.2, intron 1 of 2) 11292 ENSMUSG00000109841.2 ENSMUSG00000109841 ENSMUST00000210555 E330011O21Rik processed_transcript Interval_80327 chr18 39286312 39288117 + 0 NA intron (ENSMUSG00000036452.18, intron 18 of 22) protein_coding-intron (ENSMUSG00000036452.18, intron 18 of 22) -4221 ENSMUSG00000036452.18 ENSMUSG00000036452 ENSMUST00000133247 Arhgap26 protein_coding Interval_88987 chr2 14042802 14043256 + 0 NA intron (ENSMUSG00000063275.15, intron 4 of 6) protein_coding-intron (ENSMUSG00000063275.15, intron 5 of 7) -2606 ENSMUSG00000103926.1 ENSMUSG00000103926 ENSMUST00000195416 Gm37894 TEC Interval_2668 chr1 43138291 43138659 + 0 NA intron (ENSMUSG00000008136.14, intron 2 of 2) protein_coding-intron (ENSMUSG00000008136.14, intron 3 of 5) 39765 ENSMUSG00000010290.7 ENSMUSG00000010290 ENSMUST00000010434 AI597479 protein_coding Interval_43248 chr13 27051432 27052446 + 0 NA intron (ENSMUSG00000114646.1, intron 1 of 1) antisense-intron (ENSMUSG00000114646.1, intron 1 of 1) -5635 ENSMUSG00000021342.14 ENSMUSG00000021342 ENSMUST00000018061 Prl protein_coding Interval_167608 chr9 71070946 71071252 + 0 NA Intergenic Intergenic -55743 ENSMUSG00000111618.1 ENSMUSG00000111618 ENSMUST00000213527 Gm47268 processed_pseudogene Interval_68091 chr16 64949957 64950338 + 0 NA intron (ENSMUSG00000050783.5, intron 2 of 2) protein_coding-intron (ENSMUSG00000050783.5, intron 2 of 2) -31063 ENSMUSG00000116811.1 ENSMUSG00000116811 ENSMUST00000232275 Gm16385 processed_pseudogene Interval_70338 chr17 8636377 8636936 + 0 NA intron (ENSMUSG00000023868.17, intron 1 of 3) protein_coding-intron (ENSMUSG00000023868.17, intron 1 of 21) -67796 ENSMUSG00000084390.1 ENSMUSG00000084390 ENSMUST00000119013 Gm15425 processed_pseudogene Interval_26143 chr11 54729338 54729561 + 0 NA intron (ENSMUSG00000086039.1, intron 2 of 3) protein_coding-intron (ENSMUSG00000052298.12, intron 3 of 5) 772 ENSMUSG00000086039.1 ENSMUSG00000086039 ENSMUST00000147847 Gm12227 antisense Interval_128882 chr5 115853766 115855125 + 0 NA intron (ENSMUSG00000029516.19, intron 3 of 5) protein_coding-intron (ENSMUSG00000029516.19, intron 2 of 46) -15699 ENSMUSG00000106869.1 ENSMUSG00000106869 ENSMUST00000201056 Gm42473 TEC Interval_56154 chr14 107987907 107988103 + 0 NA Intergenic Intergenic 23379 ENSMUSG00000115562.1 ENSMUSG00000115562 ENSMUST00000228128 Gm48977 lincRNA Interval_47746 chr13 92226308 92226840 + 0 NA intron (ENSMUSG00000014850.15, intron 21 of 24) protein_coding-intron (ENSMUSG00000014850.15, intron 20 of 23) -79406 ENSMUSG00000100622.1 ENSMUSG00000100622 ENSMUST00000188317 Gm20379 protein_coding Interval_60450 chr15 73826916 73828919 + 0 NA intron (ENSMUSG00000072487.11, intron 1 of 29) protein_coding-intron (ENSMUSG00000072487.11, intron 1 of 10) 3066 ENSMUSG00000072487.11 ENSMUSG00000072487 ENSMUST00000136698 Mroh5 protein_coding Interval_19346 chr10 97346323 97346522 + 0 NA Intergenic Intergenic -77056 ENSMUSG00000105557.1 ENSMUSG00000105557 ENSMUST00000198473 Mir3966 miRNA Interval_114679 chr4 83713479 83713675 + 0 NA intron (ENSMUSG00000052407.17, intron 21 of 25) protein_coding-intron (ENSMUSG00000052407.17, intron 21 of 25) 12493 ENSMUSG00000080793.1 ENSMUSG00000080793 ENSMUST00000118595 Cbx3-ps3 processed_pseudogene Interval_89940 chr2 26613029 26613245 + 0 NA intron (ENSMUSG00000092356.2, intron 3 of 6) protein_coding-intron (ENSMUSG00000092356.2, intron 3 of 6) -9211 ENSMUSG00000026922.13 ENSMUSG00000026922 ENSMUST00000154753 Agpat2 protein_coding Interval_67040 chr16 41975234 41975625 + 0 NA intron (ENSMUSG00000061080.11, intron 5 of 8) protein_coding-intron (ENSMUSG00000061080.11, intron 3 of 5) 209488 ENSMUSG00000116841.1 ENSMUSG00000116841 ENSMUST00000232237 Gm49737 processed_pseudogene Interval_15991 chr10 59966982 59967230 + 0 NA Intergenic Intergenic -15272 ENSMUSG00000020108.4 ENSMUSG00000020108 ENSMUST00000020308 Ddit4 protein_coding Interval_145040 chr7 29596860 29598107 + 0 NA Intergenic Intergenic -23555 ENSMUSG00000100111.2 ENSMUSG00000100111 ENSMUST00000187265 A330087D11Rik lincRNA Interval_89254 chr2 18476544 18477494 + 0 NA Intergenic Intergenic -91107 ENSMUSG00000081181.1 ENSMUSG00000081181 ENSMUST00000120891 Gm13353 processed_pseudogene Interval_46684 chr13 69002375 69002587 + 0 NA intron (ENSMUSG00000113121.1, intron 1 of 3) antisense-intron (ENSMUSG00000113121.1, intron 2 of 3) 2059 ENSMUSG00000113121.1 ENSMUSG00000113121 ENSMUST00000222786 Gm35161 antisense Interval_78043 chr18 7397637 7398017 + 0 NA intron (ENSMUSG00000057440.8, intron 12 of 12) protein_coding-intron (ENSMUSG00000057440.8, intron 12 of 16) -151160 ENSMUSG00000117556.1 ENSMUSG00000117556 ENSMUST00000234527 Gm18948 processed_pseudogene Interval_79840 chr18 35506128 35507035 + 0 NA Intergenic Intergenic -7712 ENSMUSG00000024357.10 ENSMUSG00000024357 ENSMUST00000235691 Sil1 protein_coding Interval_171412 chr9 117871914 117873498 + 0 NA promoter-TSS (ENSMUSG00000097240.1) lincRNA-promoter-TSS (ENSMUSG00000097240.1) -25 ENSMUSG00000039607.17 ENSMUSG00000039607 ENSMUST00000210659 Rbms3 protein_coding Interval_162316 chr8 127025639 127026715 + 0 NA Intergenic Intergenic 14523 ENSMUSG00000110492.1 ENSMUSG00000110492 ENSMUST00000212814 Gm5358 processed_pseudogene Interval_132388 chr5 144645662 144645898 + 0 NA Intergenic Intergenic 78017 ENSMUSG00000082524.3 ENSMUSG00000082524 ENSMUST00000121256 Gm6272 processed_pseudogene Interval_100126 chr2 167206221 167206420 + 0 NA TTS (ENSMUSG00000017969.13) protein_coding-TTS (ENSMUSG00000017969.13) 2096 ENSMUSG00000017969.13 ENSMUSG00000017969 ENSMUST00000136271 Ptgis protein_coding Interval_18165 chr10 83133788 83134662 + 0 NA intron (ENSMUSG00000034612.7, intron 2 of 2) protein_coding-intron (ENSMUSG00000034612.7, intron 2 of 2) 7813 ENSMUSG00000090200.1 ENSMUSG00000090200 ENSMUST00000160997 1700025N21Rik antisense Interval_44077 chr13 40737613 40738703 + 0 NA exon (ENSMUSG00000021359.16, exon 1 of 7) protein_coding-exon (ENSMUSG00000021359.16, exon 1 of 7) 590 ENSMUSG00000114597.1 ENSMUSG00000114597 ENSMUST00000224614 Gm47067 antisense Interval_125704 chr5 73376318 73376852 + 0 NA Intergenic Intergenic -14064 ENSMUSG00000107272.1 ENSMUSG00000107272 ENSMUST00000202586 Gm34583 transcribed_processed_pseudogene Interval_138391 chr6 87826734 87826935 + 0 NA TTS (ENSMUSG00000030056.8) protein_coding-TTS (ENSMUSG00000030056.8) 6032 ENSMUSG00000108042.1 ENSMUSG00000108042 ENSMUST00000205226 B130021K23Rik TEC Interval_35072 chr12 17057189 17057854 + 0 NA Intergenic Intergenic -7892 ENSMUSG00000113447.1 ENSMUSG00000113447 ENSMUST00000221508 Gm48538 lincRNA Interval_101669 chr3 8772827 8773519 + 0 NA Intergenic Intergenic -26349 ENSMUSG00000103256.1 ENSMUSG00000103256 ENSMUST00000194556 Gm37647 TEC Interval_104399 chr3 65271831 65272388 + 0 NA intron (ENSMUSG00000027827.17, intron 2 of 13) protein_coding-intron (ENSMUSG00000027827.17, intron 2 of 13) 30576 ENSMUSG00000104093.1 ENSMUSG00000104093 ENSMUST00000195489 A330015K06Rik antisense Interval_54144 chr14 65675790 65676692 + 0 NA promoter-TSS (ENSMUSG00000022032.14) protein_coding-promoter-TSS (ENSMUSG00000022032.14) -236 ENSMUSG00000022032.14 ENSMUSG00000022032 ENSMUST00000154373 Scara5 protein_coding Interval_3653 chr1 60428667 60429157 + 0 NA intron (ENSMUSG00000026782.15, intron 1 of 4) protein_coding-intron (ENSMUSG00000026782.15, intron 1 of 8) 19131 ENSMUSG00000026782.15 ENSMUSG00000026782 ENSMUST00000190158 Abi2 protein_coding Interval_133544 chr6 6297927 6298203 + 0 NA intron (ENSMUSG00000093482.8, intron 1 of 4) lincRNA-intron (ENSMUSG00000093482.8, intron 1 of 3) 31929 ENSMUSG00000097669.1 ENSMUSG00000097669 ENSMUST00000181799 Gm8649 processed_pseudogene Interval_27476 chr11 68117591 68117966 + 0 NA intron (ENSMUSG00000020903.13, intron 6 of 6) protein_coding-intron (ENSMUSG00000020903.13, intron 7 of 7) -21814 ENSMUSG00000083924.1 ENSMUSG00000083924 ENSMUST00000120312 Gm12304 processed_pseudogene Interval_28566 chr11 76755907 76756305 + 0 NA intron (ENSMUSG00000010392.8, intron 1 of 4) protein_coding-intron (ENSMUSG00000010392.8, intron 2 of 8) 7461 ENSMUSG00000010392.8 ENSMUSG00000010392 ENSMUST00000137767 Gosr1 protein_coding Interval_131119 chr5 135250295 135251545 + 0 NA exon (ENSMUSG00000049551.2, exon 1 of 1) protein_coding-exon (ENSMUSG00000049551.2, exon 1 of 1) 310 ENSMUSG00000049551.2 ENSMUSG00000049551 ENSMUST00000062572 Fzd9 protein_coding Interval_111852 chr4 31975354 31976609 + 0 NA intron (ENSMUSG00000028284.13, intron 2 of 15) protein_coding-intron (ENSMUSG00000028284.13, intron 2 of 16) -9686 ENSMUSG00000028284.13 ENSMUSG00000028284 ENSMUST00000131310 Map3k7 protein_coding Interval_19806 chr10 109458725 109459210 + 0 NA Intergenic Intergenic -72480 ENSMUSG00000112253.1 ENSMUSG00000112253 ENSMUST00000219849 Gm47329 processed_pseudogene Interval_31958 chr11 104157609 104158760 + 0 NA intron (ENSMUSG00000018634.10, intron 2 of 12) protein_coding-intron (ENSMUSG00000018634.10, intron 2 of 12) 25329 ENSMUSG00000018634.10 ENSMUSG00000018634 ENSMUST00000093925 Crhr1 protein_coding Interval_147813 chr7 73727884 73728128 + 0 NA Intergenic Intergenic 13018 ENSMUSG00000091890.2 ENSMUSG00000091890 ENSMUST00000169090 A830073O21Rik TEC Interval_40002 chr12 100407162 100407767 + 0 NA intron (ENSMUSG00000033530.8, intron 5 of 7) protein_coding-intron (ENSMUSG00000033530.8, intron 7 of 19) 37196 ENSMUSG00000113864.1 ENSMUSG00000113864 ENSMUST00000222952 Gm48381 TEC Interval_80006 chr18 36587869 36588403 + 0 NA intron (ENSMUSG00000024483.19, intron 5 of 33) protein_coding-intron (ENSMUSG00000024483.19, intron 5 of 33) -21822 ENSMUSG00000085172.1 ENSMUSG00000085172 ENSMUST00000153606 Gm6542 processed_pseudogene Interval_155251 chr8 28853742 28854493 + 0 NA intron (ENSMUSG00000063626.6, intron 3 of 14) protein_coding-intron (ENSMUSG00000063626.6, intron 3 of 17) 233369 ENSMUSG00000109874.1 ENSMUSG00000109874 ENSMUST00000211467 Gm9911 TEC Interval_100132 chr2 167240097 167240832 + 0 NA exon (ENSMUSG00000017969.13, exon 1 of 10) protein_coding-exon (ENSMUSG00000017969.13, exon 1 of 10) -32048 ENSMUSG00000017969.13 ENSMUSG00000017969 ENSMUST00000136271 Ptgis protein_coding Interval_139349 chr6 99231857 99232329 + 0 NA intron (ENSMUSG00000030067.17, intron 4 of 4) protein_coding-intron (ENSMUSG00000030067.17, intron 2 of 3) -156036 ENSMUSG00000105902.1 ENSMUSG00000105902 ENSMUST00000200105 Gm49348 miRNA Interval_139024 chr6 94263594 94264204 + 0 NA intron (ENSMUSG00000045095.16, intron 1 of 2) protein_coding-intron (ENSMUSG00000045095.16, intron 1 of 21) 60135 ENSMUSG00000107545.1 ENSMUSG00000107545 ENSMUST00000204466 Gm44307 processed_pseudogene Interval_96182 chr2 120337313 120338140 + 0 NA TTS (ENSMUSG00000027291.15) protein_coding-TTS (ENSMUSG00000027291.15) 15395 ENSMUSG00000027291.15 ENSMUSG00000027291 ENSMUST00000126526 Vps39 protein_coding Interval_94433 chr2 91194490 91195404 + 0 NA promoter-TSS (ENSMUSG00000002108.10) protein_coding-promoter-TSS (ENSMUSG00000002108.10) 78 ENSMUSG00000002108.10 ENSMUSG00000002108 ENSMUST00000136234 Nr1h3 protein_coding Interval_117624 chr4 125119083 125119309 + 0 NA TTS (ENSMUSG00000042677.7) protein_coding-TTS (ENSMUSG00000042677.7) 3324 ENSMUSG00000042677.7 ENSMUSG00000042677 ENSMUST00000131685 Zc3h12a protein_coding Interval_152128 chr7 129729806 129730470 + 0 NA intron (ENSMUSG00000108580.1, intron 3 of 3) lincRNA-intron (ENSMUSG00000108580.1, intron 3 of 3) 62733 ENSMUSG00000108481.1 ENSMUSG00000108481 ENSMUST00000205836 Gm33248 sense_intronic Interval_86241 chr19 38035804 38036157 + 0 NA intron (ENSMUSG00000048612.16, intron 1 of 9) protein_coding-intron (ENSMUSG00000048612.16, intron 1 of 52) 7419 ENSMUSG00000048612.16 ENSMUSG00000048612 ENSMUST00000226084 Myof protein_coding Interval_3713 chr1 61605903 61606472 + 0 NA Intergenic Intergenic 14962 ENSMUSG00000086009.1 ENSMUSG00000086009 ENSMUST00000128588 4930587A21Rik lincRNA Interval_71809 chr17 26230871 26231721 + 0 NA intron (ENSMUSG00000024187.15, intron 1 of 12) protein_coding-intron (ENSMUSG00000024187.15, intron 1 of 12) -1268 ENSMUSG00000117622.1 ENSMUSG00000117622 ENSMUST00000234141 Gm20026 processed_pseudogene Interval_9049 chr1 153281535 153282700 + 0 NA intron (ENSMUSG00000026478.14, intron 1 of 27) protein_coding-intron (ENSMUSG00000026478.14, intron 1 of 27) 5073 ENSMUSG00000103818.1 ENSMUSG00000103818 ENSMUST00000194884 Gm38009 TEC Interval_50841 chr14 20156948 20157721 + 0 NA intron (ENSMUSG00000023243.9, intron 1 of 4) protein_coding-intron (ENSMUSG00000023243.9, intron 1 of 4) -12040 ENSMUSG00000023243.9 ENSMUSG00000023243 ENSMUST00000225552 Kcnk5 protein_coding Interval_128073 chr5 110704954 110705174 + 0 NA exon (ENSMUSG00000029505.17, exon 20 of 52) protein_coding-exon (ENSMUSG00000029505.17, exon 20 of 52) -12883 ENSMUSG00000077254.1 ENSMUSG00000077254 ENSMUST00000104066 Gm26079 snoRNA Interval_21334 chr10 128043971 128045799 + 0 NA exon (ENSMUSG00000061315.14, exon 3 of 9) protein_coding-exon (ENSMUSG00000061315.14, exon 3 of 9) 9250 ENSMUSG00000061315.14 ENSMUSG00000061315 ENSMUST00000092048 Naca protein_coding Interval_103347 chr3 39928875 39929575 + 0 NA Intergenic Intergenic 105648 ENSMUSG00000106948.1 ENSMUSG00000106948 ENSMUST00000202316 Gm42785 processed_pseudogene Interval_140420 chr6 117965074 117965547 + 0 NA Intergenic Intergenic -29357 ENSMUSG00000004988.9 ENSMUSG00000004988 ENSMUST00000203842 Fxyd4 protein_coding Interval_71946 chr17 27144275 27145286 + 0 NA exon (ENSMUSG00000024210.3, exon 6 of 6) protein_coding-exon (ENSMUSG00000024210.3, exon 6 of 6) 5231 ENSMUSG00000118010.1 ENSMUSG00000118010 ENSMUST00000235247 Gm50316 lincRNA Interval_161682 chr8 122005575 122006272 + 0 NA intron (ENSMUSG00000025316.16, intron 3 of 6) protein_coding-intron (ENSMUSG00000025316.16, intron 8 of 12) 27899 ENSMUSG00000099140.1 ENSMUSG00000099140 ENSMUST00000184699 Mir7237 miRNA Interval_89330 chr2 19392375 19394187 + 0 NA TTS (ENSMUSG00000023094.14) protein_coding-TTS (ENSMUSG00000023094.14) 21440 ENSMUSG00000023094.14 ENSMUSG00000023094 ENSMUST00000153289 Msrb2 protein_coding Interval_165393 chr9 47338365 47338696 + 0 NA intron (ENSMUSG00000109844.2, intron 2 of 6) lincRNA-intron (ENSMUSG00000109844.2, intron 2 of 5) -67787 ENSMUSG00000109844.2 ENSMUSG00000109844 ENSMUST00000209906 Gm31816 lincRNA Interval_99714 chr2 164449304 164449617 + 0 NA Intergenic Intergenic -5573 ENSMUSG00000017009.3 ENSMUSG00000017009 ENSMUST00000142909 Sdc4 protein_coding Interval_159550 chr8 95396990 95397411 + 0 NA Intergenic Intergenic 27329 ENSMUSG00000031790.8 ENSMUSG00000031790 ENSMUST00000212235 Mmp15 protein_coding Interval_162456 chr8 128967898 128968247 + 0 NA intron (ENSMUSG00000025808.17, intron 16 of 55) protein_coding-intron (ENSMUSG00000025808.17, intron 16 of 55) -49818 ENSMUSG00000077538.1 ENSMUSG00000077538 ENSMUST00000104350 Gm22545 snoRNA Interval_74847 chr17 56851941 56852574 + 0 NA intron (ENSMUSG00000024207.8, intron 8 of 14) protein_coding-intron (ENSMUSG00000024207.8, intron 8 of 14) -21318 ENSMUSG00000024206.15 ENSMUSG00000024206 ENSMUST00000233643 Rfx2 protein_coding Interval_157655 chr8 72112167 72112665 + 0 NA exon (ENSMUSG00000046881.7, exon 2 of 2) protein_coding-exon (ENSMUSG00000046881.7, exon 2 of 2) 1182 ENSMUSG00000088460.1 ENSMUSG00000088460 ENSMUST00000157835 Gm24747 rRNA Interval_5126 chr1 85852365 85853809 + 0 NA Intergenic Intergenic 10007 ENSMUSG00000036707.16 ENSMUSG00000036707 ENSMUST00000187623 Cab39 protein_coding Interval_94161 chr2 84762109 84763062 + 0 NA Intergenic Intergenic 12543 ENSMUSG00000023224.12 ENSMUSG00000023224 ENSMUST00000131456 Serping1 protein_coding Interval_98134 chr2 148671992 148673192 + 0 NA promoter-TSS (ENSMUSG00000036992.10) protein_coding-promoter-TSS (ENSMUSG00000036992.10) -9 ENSMUSG00000036992.10 ENSMUSG00000036992 ENSMUST00000047177 Nxt1 protein_coding Interval_51482 chr14 28089574 28090563 + 0 NA intron (ENSMUSG00000040640.11, intron 12 of 15) protein_coding-intron (ENSMUSG00000040640.11, intron 12 of 15) -213851 ENSMUSG00000109849.1 ENSMUSG00000109849 ENSMUST00000211470 Gm45645 antisense Interval_136440 chr6 54507096 54507455 + 0 NA exon (ENSMUSG00000019124.10, exon 8 of 8) protein_coding-exon (ENSMUSG00000019124.10, exon 8 of 8) 2086 ENSMUSG00000019124.10 ENSMUSG00000019124 ENSMUST00000140235 Scrn1 protein_coding Interval_157730 chr8 72563720 72564403 + 0 NA Intergenic Intergenic 7027 ENSMUSG00000044600.14 ENSMUSG00000044600 ENSMUST00000163745 Smim7 protein_coding Interval_5475 chr1 89123363 89124323 + 0 NA intron (ENSMUSG00000036206.12, intron 2 of 5) protein_coding-intron (ENSMUSG00000036206.12, intron 2 of 5) 26770 ENSMUSG00000102700.1 ENSMUSG00000102700 ENSMUST00000195426 Gm38312 TEC Interval_151559 chr7 123597508 123597739 + 0 NA Intergenic Intergenic -116694 ENSMUSG00000030757.13 ENSMUSG00000030757 ENSMUST00000128217 Zkscan2 protein_coding Interval_168589 chr9 83924553 83925833 + 0 NA promoter-TSS (ENSMUSG00000032263.14) protein_coding-promoter-TSS (ENSMUSG00000032263.14) 48 ENSMUSG00000032263.14 ENSMUSG00000032263 ENSMUST00000186136 Bckdhb protein_coding Interval_69914 chr17 3156092 3157947 + 0 NA intron (ENSMUSG00000046201.9, intron 4 of 4) protein_coding-intron (ENSMUSG00000046201.9, intron 3 of 19) -26507 ENSMUSG00000116941.1 ENSMUSG00000116941 ENSMUST00000232579 Gm46578 processed_pseudogene Interval_52897 chr14 51912051 51914273 + 0 NA promoter-TSS (ENSMUSG00000004558.15) protein_coding-promoter-TSS (ENSMUSG00000004558.15) 218 ENSMUSG00000004558.15 ENSMUSG00000004558 ENSMUST00000228173 Ndrg2 protein_coding Interval_13643 chr10 20363056 20363268 + 0 NA Intergenic Intergenic 2275 ENSMUSG00000111351.1 ENSMUSG00000111351 ENSMUST00000213596 Gm48537 processed_pseudogene Interval_106655 chr3 98173417 98173711 + 0 NA Intergenic Intergenic 12934 ENSMUSG00000043468.4 ENSMUSG00000043468 ENSMUST00000050342 Adam30 protein_coding Interval_46737 chr13 69738505 69740727 + 0 NA exon (ENSMUSG00000052981.6, exon 1 of 2) protein_coding-exon (ENSMUSG00000052981.6, exon 1 of 2) 273 ENSMUSG00000052981.6 ENSMUSG00000052981 ENSMUST00000065118 Ube2ql1 protein_coding Interval_140674 chr6 120471965 120472868 + 0 NA intron (ENSMUSG00000002897.5, intron 2 of 10) protein_coding-intron (ENSMUSG00000002897.5, intron 2 of 12) 9169 ENSMUSG00000002897.5 ENSMUSG00000002897 ENSMUST00000204078 Il17ra protein_coding Interval_8774 chr1 150901145 150901435 + 0 NA intron (ENSMUSG00000066842.18, intron 1 of 1) protein_coding-intron (ENSMUSG00000066842.18, intron 1 of 106) -99750 ENSMUSG00000099622.1 ENSMUSG00000099622 ENSMUST00000191173 Gm29188 lincRNA Interval_98138 chr2 148698459 148699095 + 0 NA intron (ENSMUSG00000027438.14, intron 8 of 9) protein_coding-intron (ENSMUSG00000027438.14, intron 9 of 10) 14165 ENSMUSG00000027439.9 ENSMUSG00000027439 ENSMUST00000151362 Gzf1 protein_coding Interval_172768 chrX 48459600 48460006 + 0 NA intron (ENSMUSG00000031103.12, intron 1 of 7) protein_coding-intron (ENSMUSG00000031103.12, intron 1 of 8) 3329 ENSMUSG00000031103.12 ENSMUSG00000031103 ENSMUST00000140486 Elf4 protein_coding Interval_134607 chr6 29916015 29917711 + 0 NA promoter-TSS (ENSMUSG00000039629.14) protein_coding-promoter-TSS (ENSMUSG00000039629.14) -149 ENSMUSG00000039629.14 ENSMUSG00000039629 ENSMUST00000046028 Strip2 protein_coding Interval_115923 chr4 106312591 106314485 + 0 NA Intergenic Intergenic -2675 ENSMUSG00000028514.15 ENSMUSG00000028514 ENSMUST00000150521 Usp24 protein_coding Interval_111473 chr4 21948999 21949343 + 0 NA exon (ENSMUSG00000028246.13, exon 3 of 3) protein_coding-exon (ENSMUSG00000028246.13, exon 3 of 3) -9285 ENSMUSG00000028246.13 ENSMUSG00000028246 ENSMUST00000155220 Faxc protein_coding Interval_28675 chr11 77703817 77704885 + 0 NA intron (ENSMUSG00000037857.16, intron 2 of 3) protein_coding-intron (ENSMUSG00000037857.16, intron 2 of 3) 17483 ENSMUSG00000000724.10 ENSMUSG00000000724 ENSMUST00000078623 Cryba1 protein_coding Interval_13762 chr10 21889201 21889607 + 0 NA intron (ENSMUSG00000019970.15, intron 1 of 13) protein_coding-intron (ENSMUSG00000019970.15, intron 1 of 13) -10512 ENSMUSG00000080607.1 ENSMUSG00000080607 ENSMUST00000116957 Gm23839 snoRNA Interval_59940 chr15 62113557 62114888 + 0 NA intron (ENSMUSG00000097039.8, intron 2 of 6) lincRNA-intron (ENSMUSG00000097039.8, intron 2 of 8) 7035 ENSMUSG00000099295.1 ENSMUSG00000099295 ENSMUST00000183721 Gm27718 misc_RNA Interval_63594 chr15 102243041 102243885 + 0 NA exon (ENSMUSG00000001288.15, exon 1 of 2) protein_coding-exon (ENSMUSG00000001288.15, exon 1 of 2) 9177 ENSMUSG00000001288.15 ENSMUSG00000001288 ENSMUST00000230330 Rarg protein_coding Interval_52567 chr14 47556213 47556519 + 0 NA intron (ENSMUSG00000037526.7, intron 4 of 10) protein_coding-intron (ENSMUSG00000037526.7, intron 3 of 9) 12038 ENSMUSG00000037526.7 ENSMUSG00000037526 ENSMUST00000228784 Atg14 protein_coding Interval_16314 chr10 62137607 62138479 + 0 NA intron (ENSMUSG00000020083.13, intron 1 of 3) protein_coding-intron (ENSMUSG00000020083.13, intron 1 of 2) -3337 ENSMUSG00000020083.13 ENSMUSG00000020083 ENSMUST00000138450 Fam241b protein_coding Interval_98018 chr2 146787243 146789067 + 0 NA Intergenic Intergenic -32450 ENSMUSG00000080870.1 ENSMUSG00000080870 ENSMUST00000119851 Gm14111 processed_pseudogene Interval_149124 chr7 94305779 94306065 + 0 NA intron (ENSMUSG00000108532.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000108532.1, intron 1 of 1) 66650 ENSMUSG00000108315.1 ENSMUSG00000108315 ENSMUST00000206678 Gm44601 lincRNA Interval_38881 chr12 83586231 83587488 + 0 NA intron (ENSMUSG00000042628.8, intron 3 of 12) protein_coding-intron (ENSMUSG00000042628.8, intron 2 of 11) 9963 ENSMUSG00000042628.8 ENSMUSG00000042628 ENSMUST00000223380 Zfyve1 protein_coding Interval_69317 chr16 92168043 92168282 + 0 NA intron (ENSMUSG00000116747.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000116747.1, intron 1 of 2) 13915 ENSMUSG00000116608.1 ENSMUSG00000116608 ENSMUST00000232211 Gm41495 lincRNA Interval_16037 chr10 60245005 60245402 + 0 NA Intergenic Intergenic -32425 ENSMUSG00000004207.14 ENSMUSG00000004207 ENSMUST00000165878 Psap protein_coding Interval_149920 chr7 102636678 102636940 + 0 NA Intergenic Intergenic -1623 ENSMUSG00000073971.3 ENSMUSG00000073971 ENSMUST00000098221 Olfr554 protein_coding Interval_125915 chr5 75662159 75662607 + 0 NA Intergenic Intergenic 13289 ENSMUSG00000005672.12 ENSMUSG00000005672 ENSMUST00000201240 Kit protein_coding Interval_55293 chr14 80641991 80642583 + 0 NA Intergenic Intergenic -192045 ENSMUSG00000115346.1 ENSMUSG00000115346 ENSMUST00000228193 Gm19120 processed_pseudogene Interval_112620 chr4 43647802 43648785 + 0 NA TTS (ENSMUSG00000028469.15) protein_coding-TTS (ENSMUSG00000028469.15) 288 ENSMUSG00000028469.15 ENSMUSG00000028469 ENSMUST00000151603 Npr2 protein_coding Interval_157573 chr8 71487747 71489149 + 0 NA promoter-TSS (ENSMUSG00000007610.15) protein_coding-promoter-TSS (ENSMUSG00000007610.15) 345 ENSMUSG00000007610.15 ENSMUSG00000007610 ENSMUST00000146551 Gtpbp3 protein_coding Interval_14591 chr10 36784851 36785151 + 0 NA intron (ENSMUSG00000044499.11, intron 3 of 4) protein_coding-intron (ENSMUSG00000044499.11, intron 4 of 5) -9070 ENSMUSG00000088423.1 ENSMUSG00000088423 ENSMUST00000157798 Gm22554 snoRNA Interval_123526 chr5 33217781 33218337 + 0 NA exon (ENSMUSG00000037379.7, exon 1 of 6) protein_coding-exon (ENSMUSG00000037379.7, exon 1 of 6) 136 ENSMUSG00000037379.7 ENSMUSG00000037379 ENSMUST00000201475 Spon2 protein_coding Interval_144175 chr7 19803055 19803533 + 0 NA Intergenic Intergenic -6315 ENSMUSG00000087206.1 ENSMUSG00000087206 ENSMUST00000128181 Gm16175 antisense Interval_81680 chr18 63353689 63354104 + 0 NA intron (ENSMUSG00000041482.17, intron 1 of 50) protein_coding-intron (ENSMUSG00000041482.17, intron 1 of 53) 32373 ENSMUSG00000041482.17 ENSMUSG00000041482 ENSMUST00000182177 Piezo2 protein_coding Interval_83426 chr18 85205154 85205780 + 0 NA Intergenic Intergenic 133631 ENSMUSG00000118198.1 ENSMUSG00000118198 ENSMUST00000237500 Gm50370 lincRNA Interval_169920 chr9 102980104 102980382 + 0 NA Intergenic Intergenic -11652 ENSMUSG00000084539.1 ENSMUSG00000084539 ENSMUST00000122590 Gm25842 misc_RNA Interval_145934 chr7 42454743 42456509 + 0 NA Intergenic Intergenic -7523 ENSMUSG00000030463.5 ENSMUSG00000030463 ENSMUST00000206593 4933421I07Rik protein_coding Interval_173301 chrX 77567550 77568718 + 0 NA intron (ENSMUSG00000025246.13, intron 1 of 15) protein_coding-intron (ENSMUSG00000025246.13, intron 1 of 15) -11353 ENSMUSG00000088278.1 ENSMUSG00000088278 ENSMUST00000157653 Gm23121 snRNA Interval_128837 chr5 115526249 115526933 + 0 NA intron (ENSMUSG00000029528.19, intron 1 of 10) protein_coding-intron (ENSMUSG00000029528.19, intron 1 of 10) 11328 ENSMUSG00000086849.1 ENSMUSG00000086849 ENSMUST00000149608 Gm13840 sense_intronic Interval_97800 chr2 144159677 144161148 + 0 NA intron (ENSMUSG00000074758.10, intron 1 of 2) lincRNA-intron (ENSMUSG00000074758.10, intron 2 of 3) -17039 ENSMUSG00000082480.1 ENSMUSG00000082480 ENSMUST00000118911 Gm11687 processed_pseudogene Interval_7043 chr1 123658705 123658971 + 0 NA intron (ENSMUSG00000036815.17, intron 4 of 25) protein_coding-intron (ENSMUSG00000036815.17, intron 4 of 25) -96397 ENSMUSG00000102902.1 ENSMUSG00000102902 ENSMUST00000195879 Gm38263 TEC Interval_42631 chr13 17265355 17265826 + 0 NA intron (ENSMUSG00000055137.7, intron 11 of 13) protein_coding-intron (ENSMUSG00000055137.7, intron 11 of 13) 6819 ENSMUSG00000113024.1 ENSMUSG00000113024 ENSMUST00000222753 Gm48502 TEC Interval_118162 chr4 129299238 129299579 + 0 NA intron (ENSMUSG00000001333.9, intron 2 of 2) protein_coding-intron (ENSMUSG00000001333.9, intron 2 of 4) 11777 ENSMUSG00000001333.9 ENSMUSG00000001333 ENSMUST00000146448 Sync protein_coding Interval_79062 chr18 24237381 24237635 + 0 NA promoter-TSS (ENSMUSG00000000420.15) protein_coding-promoter-TSS (ENSMUSG00000000420.15) 4911 ENSMUSG00000000420.15 ENSMUSG00000000420 ENSMUST00000170191 Galnt1 protein_coding Interval_35640 chr12 26468969 26470248 + 0 NA promoter-TSS (ENSMUSG00000020638.8) protein_coding-promoter-TSS (ENSMUSG00000020638.8) -901 ENSMUSG00000020638.8 ENSMUSG00000020638 ENSMUST00000221060 Cmpk2 protein_coding Interval_121661 chr5 4730645 4730864 + 0 NA Intergenic Intergenic 27281 ENSMUSG00000044674.6 ENSMUSG00000044674 ENSMUST00000054294 Fzd1 protein_coding Interval_79122 chr18 24714512 24715081 + 0 NA intron (ENSMUSG00000034295.10, intron 1 of 24) protein_coding-intron (ENSMUSG00000034295.10, intron 1 of 26) 5351 ENSMUSG00000034295.10 ENSMUSG00000034295 ENSMUST00000234199 Fhod3 protein_coding Interval_156463 chr8 48444074 48444256 + 0 NA intron (ENSMUSG00000031561.16, intron 2 of 26) protein_coding-intron (ENSMUSG00000031561.16, intron 2 of 28) 111148 ENSMUSG00000031561.16 ENSMUSG00000031561 ENSMUST00000211812 Tenm3 protein_coding Interval_102447 chr3 26608276 26609411 + 0 NA Intergenic Intergenic 17468 ENSMUSG00000080368.1 ENSMUSG00000080368 ENSMUST00000116718 Gm25773 miRNA Interval_9585 chr1 159786301 159787479 + 0 NA intron (ENSMUSG00000015829.13, intron 1 of 1) protein_coding-intron (ENSMUSG00000015829.13, intron 1 of 21) 105228 ENSMUSG00000073528.7 ENSMUSG00000073528 ENSMUST00000194909 Gm10530 processed_transcript Interval_63027 chr15 98710216 98711013 + 0 NA intron (ENSMUSG00000003354.6, intron 2 of 7) protein_coding-intron (ENSMUSG00000003354.6, intron 2 of 7) 2383 ENSMUSG00000003354.6 ENSMUSG00000003354 ENSMUST00000229471 Ccdc65 protein_coding Interval_113751 chr4 58085463 58085781 + 0 NA intron (ENSMUSG00000028369.15, intron 32 of 47) protein_coding-intron (ENSMUSG00000028369.15, intron 32 of 47) -76498 ENSMUSG00000038709.15 ENSMUSG00000038709 ENSMUST00000239406 Txndc8 protein_coding Interval_45497 chr13 55477495 55478467 + 0 NA promoter-TSS (ENSMUSG00000098341.1) miRNA-promoter-TSS (ENSMUSG00000098341.1) -205 ENSMUSG00000098341.1 ENSMUSG00000098341 ENSMUST00000183653 Mir6944 miRNA Interval_151928 chr7 127587954 127589232 + 0 NA promoter-TSS (ENSMUSG00000030816.8) protein_coding-promoter-TSS (ENSMUSG00000030816.8) -326 ENSMUSG00000030816.8 ENSMUSG00000030816 ENSMUST00000206443 Rnf40 protein_coding Interval_110059 chr3 152847320 152847606 + 0 NA intron (ENSMUSG00000039037.5, intron 2 of 4) protein_coding-intron (ENSMUSG00000039037.5, intron 2 of 4) 28754 ENSMUSG00000090040.1 ENSMUSG00000090040 ENSMUST00000162856 Gm16232 processed_pseudogene Interval_34048 chr11 120184812 120185221 + 0 NA TTS (ENSMUSG00000075389.3) processed_transcript-TTS (ENSMUSG00000075389.3) 3735 ENSMUSG00000075389.3 ENSMUSG00000075389 ENSMUST00000145437 2810410L24Rik processed_transcript Interval_134730 chr6 31032902 31033475 + 0 NA Intergenic Intergenic 29559 ENSMUSG00000065610.1 ENSMUSG00000065610 ENSMUST00000083676 Mir29a miRNA Interval_169213 chr9 95558923 95560933 + 0 NA exon (ENSMUSG00000064225.6, exon 1 of 1) protein_coding-exon (ENSMUSG00000064225.6, exon 1 of 1) 271 ENSMUSG00000064225.6 ENSMUSG00000064225 ENSMUST00000079597 Paqr9 protein_coding Interval_106820 chr3 101095491 101096503 + 0 NA intron (ENSMUSG00000027864.9, intron 1 of 8) protein_coding-intron (ENSMUSG00000027864.9, intron 1 of 8) -8604 ENSMUSG00000105717.1 ENSMUSG00000105717 ENSMUST00000200367 Gm43465 sense_intronic Interval_167492 chr9 69999101 69999908 + 0 NA TTS (ENSMUSG00000011958.17) protein_coding-TTS (ENSMUSG00000011958.17) 4026 ENSMUSG00000011958.17 ENSMUSG00000011958 ENSMUST00000137472 Bnip2 protein_coding Interval_5609 chr1 90201890 90204282 + 0 NA promoter-TSS (ENSMUSG00000044337.5) protein_coding-promoter-TSS (ENSMUSG00000044337.5) -920 ENSMUSG00000044337.5 ENSMUSG00000044337 ENSMUST00000159654 Ackr3 protein_coding Interval_143702 chr7 15817053 15817809 + 0 NA Intergenic Intergenic 8384 ENSMUSG00000092576.3 ENSMUSG00000092576 ENSMUST00000173825 Obox4-ps35 lincRNA Interval_775 chr1 10877570 10878985 + 0 NA Intergenic Intergenic 9589 ENSMUSG00000100648.1 ENSMUSG00000100648 ENSMUST00000188013 Gm28659 processed_pseudogene Interval_41393 chr12 113259732 113259973 + 0 NA intron (ENSMUSG00000095079.6, intron 1 of 3) IG_C_gene-intron (ENSMUSG00000095079.6, intron 1 of 2) 384 ENSMUSG00000095079.6 ENSMUSG00000095079 ENSMUST00000178282 Igha IG_C_gene Interval_50608 chr14 16513578 16513996 + 0 NA intron (ENSMUSG00000017491.9, intron 2 of 7) protein_coding-intron (ENSMUSG00000017491.9, intron 2 of 7) -61814 ENSMUSG00000114463.1 ENSMUSG00000114463 ENSMUST00000224418 Gm48162 antisense Interval_87908 chr19 57038655 57039502 + 0 NA TTS (ENSMUSG00000025085.16) protein_coding-TTS (ENSMUSG00000025085.16) -101840 ENSMUSG00000025083.18 ENSMUSG00000025083 ENSMUST00000132851 Afap1l2 protein_coding Interval_95281 chr2 105610922 105612193 + 0 NA intron (ENSMUSG00000086029.7, intron 1 of 3) antisense-intron (ENSMUSG00000086029.7, intron 2 of 3) 49786 ENSMUSG00000102424.2 ENSMUSG00000102424 ENSMUST00000194826 Paupar lincRNA Interval_40734 chr12 108017347 108017872 + 0 NA Intergenic Intergenic -14195 ENSMUSG00000048251.15 ENSMUSG00000048251 ENSMUST00000109891 Bcl11b protein_coding Interval_110408 chr3 157870613 157870942 + 0 NA Intergenic Intergenic 18097 ENSMUSG00000104862.1 ENSMUSG00000104862 ENSMUST00000200636 Gm6520 processed_pseudogene Interval_45185 chr13 53024353 53024812 + 0 NA Intergenic Intergenic -4336 ENSMUSG00000112952.1 ENSMUSG00000112952 ENSMUST00000222184 Gm48336 lincRNA Interval_166362 chr9 58647755 58649454 + 0 NA intron (ENSMUSG00000032336.17, intron 5 of 6) protein_coding-intron (ENSMUSG00000032336.17, intron 5 of 7) 15665 ENSMUSG00000074269.10 ENSMUSG00000074269 ENSMUST00000186960 Rec114 protein_coding Interval_66665 chr16 35965139 35968280 + 0 NA TTS (ENSMUSG00000086324.8) antisense-TTS (ENSMUSG00000086324.8) 14372 ENSMUSG00000086324.8 ENSMUSG00000086324 ENSMUST00000144134 Gm15564 antisense Interval_95973 chr2 118837120 118839307 + 0 NA TTS (ENSMUSG00000027331.15) protein_coding-TTS (ENSMUSG00000027331.15) -4091 ENSMUSG00000086421.1 ENSMUSG00000086421 ENSMUST00000133534 Gm14091 antisense Interval_25435 chr11 48377551 48377772 + 0 NA Intergenic Intergenic -87348 ENSMUSG00000081952.1 ENSMUSG00000081952 ENSMUST00000120545 Gm12178 processed_pseudogene Interval_39246 chr12 86163072 86163936 + 0 NA Intergenic Intergenic -5837 ENSMUSG00000097543.1 ENSMUSG00000097543 ENSMUST00000181667 Gm805 lincRNA Interval_112601 chr4 43498178 43500123 + 0 NA promoter-TSS (ENSMUSG00000051517.14) protein_coding-promoter-TSS (ENSMUSG00000051517.14) 511 ENSMUSG00000051517.14 ENSMUSG00000051517 ENSMUST00000156058 Arhgef39 protein_coding Interval_214 KQ030493.2 155925 156805 + 0 NA NA NA NA NA Interval_152850 chr7 138818087 138818564 + 0 NA Intergenic Intergenic -2420 ENSMUSG00000110241.1 ENSMUSG00000110241 ENSMUST00000211620 Gm45506 processed_pseudogene Interval_67648 chr16 55469038 55469471 + 0 NA Intergenic Intergenic -25477 ENSMUSG00000093292.1 ENSMUSG00000093292 ENSMUST00000175551 Mir5118 miRNA Interval_139962 chr6 113082415 113083052 + 0 NA intron (ENSMUSG00000034269.12, intron 1 of 2) protein_coding-intron (ENSMUSG00000034269.12, intron 1 of 21) -5542 ENSMUSG00000086429.9 ENSMUSG00000086429 ENSMUST00000159544 Gt(ROSA)26Sor antisense Interval_71248 chr17 21578823 21580125 + 0 NA intron (ENSMUSG00000067931.6, intron 3 of 5) protein_coding-intron (ENSMUSG00000067931.6, intron 3 of 5) 12466 ENSMUSG00000067931.6 ENSMUSG00000067931 ENSMUST00000088787 Zfp948 protein_coding Interval_22603 chr11 12231833 12232765 + 0 NA Intergenic Intergenic -89976 ENSMUSG00000086584.8 ENSMUSG00000086584 ENSMUST00000174550 Gm12002 antisense Interval_49036 chr13 107113684 107114517 + 0 NA Intergenic Intergenic 50407 ENSMUSG00000114311.1 ENSMUSG00000114311 ENSMUST00000224729 Gm31452 lincRNA Interval_44027 chr13 39950086 39950515 + 0 NA Intergenic Intergenic -65919 ENSMUSG00000114957.1 ENSMUSG00000114957 ENSMUST00000224937 Gm47316 lincRNA Interval_13455 chr10 18399482 18400585 + 0 NA intron (ENSMUSG00000039835.16, intron 1 of 4) protein_coding-intron (ENSMUSG00000039835.16, intron 1 of 4) -62792 ENSMUSG00000111313.1 ENSMUSG00000111313 ENSMUST00000213578 Gm18942 processed_pseudogene Interval_147315 chr7 65779514 65780738 + 0 NA Intergenic Intergenic -4733 ENSMUSG00000068480.6 ENSMUSG00000068480 ENSMUST00000089593 Gm7551 processed_pseudogene Interval_1083 chr1 15276185 15276444 + 0 NA Intergenic Intergenic -6517 ENSMUSG00000073737.3 ENSMUSG00000073737 ENSMUST00000086739 Gm10566 processed_pseudogene Interval_7825 chr1 133941232 133941772 + 0 NA Intergenic Intergenic -20091 ENSMUSG00000041577.5 ENSMUSG00000041577 ENSMUST00000127583 Prelp protein_coding Interval_140618 chr6 120145533 120146032 + 0 NA intron (ENSMUSG00000041377.12, intron 1 of 3) protein_coding-intron (ENSMUSG00000041377.12, intron 1 of 3) -2032 ENSMUSG00000095086.1 ENSMUSG00000095086 ENSMUST00000180263 Gm25327 snRNA Interval_161887 chr8 123453444 123454666 + 0 NA intron (ENSMUSG00000001482.15, intron 5 of 6) protein_coding-intron (ENSMUSG00000001482.15, intron 5 of 12) -17329 ENSMUSG00000088233.1 ENSMUSG00000088233 ENSMUST00000157608 Gm25428 snoRNA Interval_172511 chrX 22579495 22579754 + 0 NA Intergenic Intergenic 117992 ENSMUSG00000052025.9 ENSMUSG00000052025 ENSMUST00000140102 Ppp1r2-ps7 transcribed_processed_pseudogene Interval_140497 chr6 118833324 118834311 + 0 NA intron (ENSMUSG00000051331.16, intron 3 of 47) protein_coding-intron (ENSMUSG00000051331.16, intron 3 of 46) -1083 ENSMUSG00000089115.1 ENSMUSG00000089115 ENSMUST00000158490 Gm25905 snRNA Interval_136258 chr6 52332387 52333771 + 0 NA Intergenic Intergenic 13863 ENSMUSG00000059159.6 ENSMUSG00000059159 ENSMUST00000118230 Gm8129 processed_pseudogene Interval_128342 chr5 112637662 112637923 + 0 NA Intergenic Intergenic -2543 ENSMUSG00000105735.1 ENSMUSG00000105735 ENSMUST00000195895 4933415J04Rik TEC Interval_61243 chr15 80191503 80193130 + 0 NA intron (ENSMUSG00000042428.6, intron 1 of 1) protein_coding-intron (ENSMUSG00000042428.6, intron 1 of 1) 18595 ENSMUSG00000042428.6 ENSMUSG00000042428 ENSMUST00000044970 Mgat3 protein_coding Interval_122058 chr5 15739948 15740169 + 0 NA Intergenic Intergenic -25787 ENSMUSG00000073208.12 ENSMUSG00000073208 ENSMUST00000179506 Speer4c protein_coding Interval_7636 chr1 132678256 132679524 + 0 NA intron (ENSMUSG00000026442.14, intron 1 of 2) protein_coding-intron (ENSMUSG00000026442.14, intron 1 of 26) -50465 ENSMUSG00000101126.1 ENSMUSG00000101126 ENSMUST00000189499 Gm10538 antisense Interval_67047 chr16 42158251 42158552 + 0 NA intron (ENSMUSG00000061080.11, intron 3 of 4) protein_coding-intron (ENSMUSG00000061080.11, intron 6 of 6) 26516 ENSMUSG00000116841.1 ENSMUSG00000116841 ENSMUST00000232237 Gm49737 processed_pseudogene Interval_22649 chr11 12469350 12470233 + 0 NA Intergenic Intergenic -57647 ENSMUSG00000020173.17 ENSMUSG00000020173 ENSMUST00000146067 Cobl protein_coding Interval_162059 chr8 124799335 124801657 + 0 NA intron (ENSMUSG00000036913.15, intron 1 of 10) protein_coding-intron (ENSMUSG00000036913.15, intron 1 of 10) 7404 ENSMUSG00000036913.15 ENSMUSG00000036913 ENSMUST00000211867 Trim67 protein_coding Interval_109305 chr3 138800479 138801364 + 0 NA intron (ENSMUSG00000028152.10, intron 2 of 5) protein_coding-intron (ENSMUSG00000028152.10, intron 1 of 7) 28241 ENSMUSG00000086123.3 ENSMUSG00000086123 ENSMUST00000153140 Gm16060 processed_pseudogene Interval_134130 chr6 21325175 21325760 + 0 NA intron (ENSMUSG00000060882.5, intron 1 of 5) protein_coding-intron (ENSMUSG00000060882.5, intron 1 of 5) 66546 ENSMUSG00000106826.1 ENSMUSG00000106826 ENSMUST00000202678 Gm42583 TEC Interval_117789 chr4 126236215 126237330 + 0 NA exon (ENSMUSG00000028849.17, exon 8 of 17) protein_coding-exon (ENSMUSG00000028849.17, exon 8 of 17) -3224 ENSMUSG00000028849.17 ENSMUSG00000028849 ENSMUST00000131579 Map7d1 protein_coding Interval_116845 chr4 117648381 117648694 + 0 NA intron (ENSMUSG00000033423.16, intron 1 of 2) protein_coding-intron (ENSMUSG00000033423.16, intron 7 of 8) 33716 ENSMUSG00000009640.11 ENSMUSG00000009640 ENSMUST00000127750 Dmap1 protein_coding Interval_698 chr1 9998314 9999483 + 0 NA intron (ENSMUSG00000025916.10, intron 4 of 6) protein_coding-intron (ENSMUSG00000025916.10, intron 4 of 8) 10232 ENSMUSG00000025916.10 ENSMUSG00000025916 ENSMUST00000155163 Ppp1r42 protein_coding Interval_82785 chr18 77064665 77066050 + 0 NA promoter-TSS (ENSMUSG00000025423.16) protein_coding-promoter-TSS (ENSMUSG00000025423.16) 112 ENSMUSG00000025423.16 ENSMUSG00000025423 ENSMUST00000168882 Pias2 protein_coding Interval_1160 chr1 16408434 16408918 + 0 NA intron (ENSMUSG00000025920.19, intron 5 of 13) protein_coding-intron (ENSMUSG00000025920.19, intron 4 of 12) 110630 ENSMUSG00000025920.19 ENSMUSG00000025920 ENSMUST00000144138 Stau2 protein_coding Interval_166165 chr9 57198004 57198420 + 0 NA Intergenic Intergenic 22937 ENSMUSG00000100282.1 ENSMUSG00000100282 ENSMUST00000185243 1700041C23Rik lincRNA Interval_3515 chr1 59231175 59231458 + 0 NA intron (ENSMUSG00000026024.14, intron 1 of 2) protein_coding-intron (ENSMUSG00000026024.14, intron 1 of 33) -12190 ENSMUSG00000026024.14 ENSMUSG00000026024 ENSMUST00000188469 Als2 protein_coding Interval_49192 chr13 109296483 109296690 + 0 NA intron (ENSMUSG00000021699.17, intron 1 of 14) protein_coding-intron (ENSMUSG00000021699.17, intron 1 of 14) -28158 ENSMUSG00000076946.2 ENSMUSG00000076946 ENSMUST00000103758 Mir582 miRNA Interval_62061 chr15 86159261 86159952 + 0 NA promoter-TSS (ENSMUSG00000035891.16) protein_coding-promoter-TSS (ENSMUSG00000035891.16) -7158 ENSMUSG00000035891.16 ENSMUSG00000035891 ENSMUST00000156546 Cerk protein_coding Interval_142404 chr6 141600628 141601618 + 0 NA Intergenic Intergenic -33335 ENSMUSG00000030236.10 ENSMUSG00000030236 ENSMUST00000160179 Slco1b2 protein_coding Interval_123261 chr5 30959762 30960670 + 0 NA promoter-TSS (ENSMUSG00000045302.13) protein_coding-promoter-TSS (ENSMUSG00000045302.13) -990 ENSMUSG00000045302.13 ENSMUSG00000045302 ENSMUST00000202593 Preb protein_coding Interval_24194 chr11 31157138 31157454 + 0 NA Intergenic Intergenic 25166 ENSMUSG00000091195.1 ENSMUSG00000091195 ENSMUST00000165626 Gm17332 protein_coding Interval_56372 chr14 118192687 118193888 + 0 NA Intergenic Intergenic -19011 ENSMUSG00000115774.1 ENSMUSG00000115774 ENSMUST00000227956 4933431J24Rik lincRNA Interval_163656 chr9 23335279 23335503 + 0 NA intron (ENSMUSG00000031963.8, intron 6 of 14) protein_coding-intron (ENSMUSG00000031963.8, intron 6 of 14) 112105 ENSMUSG00000031963.8 ENSMUSG00000031963 ENSMUST00000214050 Bmper protein_coding Interval_62845 chr15 97376210 97377227 + 0 NA intron (ENSMUSG00000044250.8, intron 5 of 5) protein_coding-intron (ENSMUSG00000044250.8, intron 5 of 5) 15516 ENSMUSG00000044250.8 ENSMUSG00000044250 ENSMUST00000226495 Pced1b protein_coding Interval_3910 chr1 64717485 64718111 + 0 NA intron (ENSMUSG00000070871.10, intron 8 of 10) protein_coding-intron (ENSMUSG00000070871.10, intron 7 of 9) -18442 ENSMUSG00000102140.1 ENSMUSG00000102140 ENSMUST00000194323 Gm38058 TEC Interval_129590 chr5 121179285 121179500 + 0 NA intron (ENSMUSG00000043733.14, intron 1 of 14) protein_coding-intron (ENSMUSG00000043733.14, intron 1 of 15) 5604 ENSMUSG00000106940.1 ENSMUSG00000106940 ENSMUST00000200872 Gm42930 TEC Interval_114346 chr4 74020227 74020948 + 0 NA intron (ENSMUSG00000049122.17, intron 1 of 14) protein_coding-intron (ENSMUSG00000049122.17, intron 1 of 13) -23801 ENSMUSG00000081048.1 ENSMUSG00000081048 ENSMUST00000122355 Gm11760 processed_pseudogene Interval_62567 chr15 94686905 94687804 + 0 NA intron (ENSMUSG00000063296.5, intron 2 of 2) protein_coding-intron (ENSMUSG00000063296.5, intron 2 of 7) -5968 ENSMUSG00000095169.1 ENSMUSG00000095169 ENSMUST00000103977 Gm25546 snoRNA Interval_150392 chr7 110108691 110109807 + 0 NA intron (ENSMUSG00000101585.6, intron 2 of 3) antisense-intron (ENSMUSG00000101585.6, intron 2 of 3) -10741 ENSMUSG00000109904.1 ENSMUSG00000109904 ENSMUST00000210940 Gm45819 TEC Interval_117409 chr4 123537960 123538213 + 0 NA TTS (ENSMUSG00000028649.21) protein_coding-TTS (ENSMUSG00000028649.21) 47855 ENSMUSG00000089588.1 ENSMUSG00000089588 ENSMUST00000158963 Gm23548 misc_RNA Interval_14975 chr10 41616123 41617803 + 0 NA intron (ENSMUSG00000075225.15, intron 23 of 47) protein_coding-intron (ENSMUSG00000075225.15, intron 1 of 12) -5644 ENSMUSG00000075225.15 ENSMUSG00000075225 ENSMUST00000190522 Ccdc162 protein_coding Interval_45373 chr13 54711025 54711405 + 0 NA intron (ENSMUSG00000034918.8, intron 1 of 31) protein_coding-intron (ENSMUSG00000034918.8, intron 1 of 31) 9754 ENSMUSG00000034918.8 ENSMUSG00000034918 ENSMUST00000037145 Cdhr2 protein_coding Interval_128092 chr5 110817135 110817380 + 0 NA Intergenic Intergenic -7204 ENSMUSG00000029512.11 ENSMUSG00000029512 ENSMUST00000198470 Ulk1 protein_coding Interval_158814 chr8 86833980 86834979 + 0 NA intron (ENSMUSG00000031652.11, intron 1 of 1) protein_coding-intron (ENSMUSG00000031652.11, intron 1 of 1) 17941 ENSMUSG00000031652.11 ENSMUSG00000031652 ENSMUST00000210029 N4bp1 protein_coding Interval_113140 chr4 48579234 48580215 + 0 NA Intergenic Intergenic 39178 ENSMUSG00000039693.11 ENSMUSG00000039693 ENSMUST00000132360 Msantd3 protein_coding Interval_90289 chr2 29582313 29582933 + 0 NA Intergenic Intergenic -61192 ENSMUSG00000039844.20 ENSMUSG00000039844 ENSMUST00000123953 Rapgef1 protein_coding Interval_157599 chr8 71645767 71646007 + 0 NA promoter-TSS (ENSMUSG00000034799.16) protein_coding-promoter-TSS (ENSMUSG00000034799.16) -14781 ENSMUSG00000098976.1 ENSMUSG00000098976 ENSMUST00000184793 Mir6769b miRNA Interval_170044 chr9 104020011 104020807 + 0 NA intron (ENSMUSG00000032558.19, intron 9 of 26) protein_coding-intron (ENSMUSG00000032558.19, intron 9 of 26) -18070 ENSMUSG00000111035.1 ENSMUSG00000111035 ENSMUST00000216588 Gm33054 lincRNA Interval_41451 chr12 114222646 114223162 + 0 NA exon (ENSMUSG00000076668.4, exon 2 of 2) IG_V_gene-exon (ENSMUSG00000076668.4, exon 2 of 2) 424 ENSMUSG00000076668.4 ENSMUSG00000076668 ENSMUST00000192499 Ighv7-4 IG_V_gene Interval_135346 chr6 38533155 38535468 + 0 NA promoter-TSS (ENSMUSG00000019689.4) protein_coding-promoter-TSS (ENSMUSG00000019689.4) 809 ENSMUSG00000019689.4 ENSMUSG00000019689 ENSMUST00000019833 Fmc1 protein_coding Interval_69515 chr16 93982371 93983019 + 0 NA promoter-TSS (ENSMUSG00000116681.1) sense_intronic-promoter-TSS (ENSMUSG00000116681.1) -107 ENSMUSG00000116681.1 ENSMUSG00000116681 ENSMUST00000232110 Gm49618 sense_intronic Interval_18833 chr10 91166977 91167317 + 0 NA intron (ENSMUSG00000019961.17, intron 1 of 2) protein_coding-intron (ENSMUSG00000019961.17, intron 1 of 3) 3315 ENSMUSG00000019961.17 ENSMUSG00000019961 ENSMUST00000213270 Tmpo protein_coding Interval_60348 chr15 73104453 73105370 + 0 NA exon (ENSMUSG00000036698.11, exon 19 of 19) protein_coding-exon (ENSMUSG00000036698.11, exon 19 of 19) 14499 ENSMUSG00000068391.8 ENSMUSG00000068391 ENSMUST00000137698 Chrac1 protein_coding Interval_48950 chr13 105550814 105551543 + 0 NA Intergenic Intergenic 18785 ENSMUSG00000114518.1 ENSMUSG00000114518 ENSMUST00000224120 Gm48208 processed_pseudogene Interval_123306 chr5 31283081 31283327 + 0 NA intron (ENSMUSG00000038564.11, intron 8 of 15) protein_coding-intron (ENSMUSG00000038564.11, intron 8 of 47) -1764 ENSMUSG00000038564.11 ENSMUSG00000038564 ENSMUST00000201809 Ift172 protein_coding Interval_53814 chr14 62217378 62219317 + 0 NA Intergenic Intergenic -13995 ENSMUSG00000098096.1 ENSMUSG00000098096 ENSMUST00000183203 Gm26969 lincRNA Interval_154549 chr8 19300467 19300768 + 0 NA promoter-TSS (ENSMUSG00000081154.2) transcribed_processed_pseudogene-promoter-TSS (ENSMUSG00000081154.2) -60 ENSMUSG00000081154.2 ENSMUSG00000081154 ENSMUST00000212360 Defa-ps13 transcribed_processed_pseudogene Interval_141349 chr6 127512688 127513268 + 0 NA Intergenic Intergenic 27185 ENSMUSG00000106962.1 ENSMUSG00000106962 ENSMUST00000202455 Gm43633 TEC Interval_64372 chr16 10904090 10904358 + 0 NA intron (ENSMUSG00000117309.1, intron 17 of 45) transcribed_unitary_pseudogene-intron (ENSMUSG00000117309.1, intron 17 of 45) 33082 ENSMUSG00000095369.2 ENSMUSG00000095369 ENSMUST00000233047 Gm21859 processed_transcript Interval_114024 chr4 62582881 62584582 + 0 NA intron (ENSMUSG00000059810.18, intron 1 of 17) protein_coding-intron (ENSMUSG00000059810.18, intron 3 of 19) -39978 ENSMUSG00000059810.18 ENSMUSG00000059810 ENSMUST00000153875 Rgs3 protein_coding Interval_76500 chr17 80614681 80614917 + 0 NA intron (ENSMUSG00000024242.15, intron 5 of 18) protein_coding-intron (ENSMUSG00000024242.15, intron 20 of 33) 10187 ENSMUSG00000024242.15 ENSMUSG00000024242 ENSMUST00000234486 Map4k3 protein_coding Interval_116974 chr4 118579147 118579744 + 0 NA exon (ENSMUSG00000028730.14, exon 17 of 23) protein_coding-exon (ENSMUSG00000028730.14, exon 17 of 23) -36156 ENSMUSG00000050854.9 ENSMUSG00000050854 ENSMUST00000154025 Tmem125 protein_coding Interval_159435 chr8 94657946 94658250 + 0 NA intron (ENSMUSG00000050079.10, intron 13 of 13) protein_coding-intron (ENSMUSG00000050079.10, intron 14 of 14) -9367 ENSMUSG00000031776.17 ENSMUSG00000031776 ENSMUST00000212254 Arl2bp protein_coding Interval_38049 chr12 75176206 75177850 + 0 NA exon (ENSMUSG00000034402.3, exon 1 of 11) protein_coding-exon (ENSMUSG00000034402.3, exon 1 of 11) 304 ENSMUSG00000034402.3 ENSMUSG00000034402 ENSMUST00000042299 Kcnh5 protein_coding Interval_38160 chr12 76051057 76051313 + 0 NA intron (ENSMUSG00000063450.14, intron 85 of 114) protein_coding-intron (ENSMUSG00000063450.14, intron 85 of 115) 101442 ENSMUSG00000046580.10 ENSMUSG00000046580 ENSMUST00000121461 Gm7862 processed_pseudogene Interval_174141 chrX 136195161 136195940 + 0 NA Intergenic Intergenic 8087 ENSMUSG00000054034.10 ENSMUSG00000054034 ENSMUST00000131510 Tceal5 protein_coding Interval_125135 chr5 64802557 64804139 + 0 NA promoter-TSS (ENSMUSG00000029178.14) protein_coding-promoter-TSS (ENSMUSG00000029178.14) -274 ENSMUSG00000029178.14 ENSMUSG00000029178 ENSMUST00000198946 Klf3 protein_coding Interval_34260 chr11 121762058 121762342 + 0 NA Intergenic Intergenic -40907 ENSMUSG00000085126.1 ENSMUSG00000085126 ENSMUST00000153767 Gm12589 lincRNA Interval_144902 chr7 28840959 28841901 + 0 NA TTS (ENSMUSG00000053964.17) protein_coding-TTS (ENSMUSG00000053964.17) 7576 ENSMUSG00000053964.17 ENSMUSG00000053964 ENSMUST00000137468 Lgals4 protein_coding Interval_112892 chr4 45851892 45852094 + 0 NA intron (ENSMUSG00000028327.14, intron 1 of 18) protein_coding-intron (ENSMUSG00000028327.14, intron 1 of 17) -22218 ENSMUSG00000028327.14 ENSMUSG00000028327 ENSMUST00000165478 Stra6l protein_coding Interval_128812 chr5 115403451 115405248 + 0 NA intron (ENSMUSG00000087292.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000087292.1, intron 1 of 2) 18151 ENSMUSG00000106887.1 ENSMUSG00000106887 ENSMUST00000201293 A930005G22Rik TEC Interval_37795 chr12 72019744 72019958 + 0 NA Intergenic Intergenic 29408 ENSMUSG00000114155.1 ENSMUSG00000114155 ENSMUST00000221336 Gm7986 processed_pseudogene Interval_104876 chr3 77233842 77234273 + 0 NA Intergenic Intergenic -128772 ENSMUSG00000088481.1 ENSMUSG00000088481 ENSMUST00000157856 Gm23644 snoRNA Interval_28703 chr11 77835152 77835887 + 0 NA intron (ENSMUSG00000000631.20, intron 21 of 41) protein_coding-intron (ENSMUSG00000000631.20, intron 19 of 39) 34169 ENSMUSG00000000631.20 ENSMUSG00000000631 ENSMUST00000142571 Myo18a protein_coding Interval_128205 chr5 111701613 111702353 + 0 NA Intergenic Intergenic -31941 ENSMUSG00000096949.1 ENSMUSG00000096949 ENSMUST00000180627 Gm26897 protein_coding Interval_152028 chr7 128408360 128408629 + 0 NA TTS (ENSMUSG00000084964.2) processed_transcript-TTS (ENSMUSG00000084964.2) 2499 ENSMUSG00000084964.2 ENSMUSG00000084964 ENSMUST00000141541 Gm15503 processed_transcript Interval_54299 chr14 67308206 67308649 + 0 NA intron (ENSMUSG00000075549.2, intron 3 of 3) protein_coding-intron (ENSMUSG00000022053.13, intron 7 of 16) 6284 ENSMUSG00000075549.2 ENSMUSG00000075549 ENSMUST00000100448 Gm6878 antisense Interval_3123 chr1 53711041 53711249 + 0 NA Intergenic Intergenic -4361 ENSMUSG00000096141.2 ENSMUSG00000096141 ENSMUST00000189677 Dnah7a protein_coding Interval_164194 chr9 32377303 32377881 + 0 NA intron (ENSMUSG00000041248.9, intron 1 of 1) protein_coding-intron (ENSMUSG00000041248.9, intron 1 of 1) -7617 ENSMUSG00000041248.9 ENSMUSG00000041248 ENSMUST00000172015 Kcnj1 protein_coding Interval_123677 chr5 34465959 34466347 + 0 NA promoter-TSS (ENSMUSG00000037210.16) protein_coding-promoter-TSS (ENSMUSG00000037210.16) -3511 ENSMUSG00000107227.1 ENSMUSG00000107227 ENSMUST00000201811 Gm42559 TEC Interval_80458 chr18 42357162 42357893 + 0 NA Intergenic Intergenic -37548 ENSMUSG00000024497.4 ENSMUSG00000024497 ENSMUST00000237247 Pou4f3 protein_coding Interval_39490 chr12 88412998 88413199 + 0 NA intron (ENSMUSG00000021044.15, intron 4 of 10) protein_coding-intron (ENSMUSG00000021044.15, intron 4 of 10) -7198 ENSMUSG00000021044.15 ENSMUSG00000021044 ENSMUST00000223538 Adck1 protein_coding Interval_24212 chr11 31540892 31541308 + 0 NA Intergenic Intergenic 130627 ENSMUSG00000044502.16 ENSMUSG00000044502 ENSMUST00000109415 Bod1 protein_coding Interval_27520 chr11 68378611 68379093 + 0 NA intron (ENSMUSG00000020902.12, intron 3 of 7) protein_coding-intron (ENSMUSG00000020902.12, intron 2 of 6) 8160 ENSMUSG00000020902.12 ENSMUSG00000020902 ENSMUST00000135141 Ntn1 protein_coding Interval_48644 chr13 100805652 100806196 + 0 NA intron (ENSMUSG00000021629.10, intron 13 of 14) protein_coding-intron (ENSMUSG00000021629.10, intron 14 of 15) -19522 ENSMUSG00000041431.16 ENSMUSG00000041431 ENSMUST00000142056 Ccnb1 protein_coding Interval_31171 chr11 98692937 98694268 + 0 NA exon (ENSMUSG00000017221.14, exon 8 of 12) protein_coding-exon (ENSMUSG00000017221.14, exon 8 of 12) -7661 ENSMUSG00000038067.2 ENSMUSG00000038067 ENSMUST00000038886 Csf3 protein_coding Interval_149074 chr7 92896879 92897742 + 0 NA intron (ENSMUSG00000061119.7, intron 1 of 1) protein_coding-intron (ENSMUSG00000061119.7, intron 1 of 8) -4869 ENSMUSG00000109268.1 ENSMUSG00000109268 ENSMUST00000208883 9530078K11Rik TEC Interval_18598 chr10 88330595 88330987 + 0 NA intron (ENSMUSG00000020057.2, intron 4 of 6) protein_coding-intron (ENSMUSG00000020057.2, intron 4 of 6) -20659 ENSMUSG00000112715.1 ENSMUSG00000112715 ENSMUST00000218701 Gm48476 processed_pseudogene Interval_93285 chr2 71675536 71675938 + 0 NA Intergenic Intergenic -43680 ENSMUSG00000064263.6 ENSMUSG00000064263 ENSMUST00000079720 Platr26 lincRNA Interval_46971 chr13 73831093 73831819 + 0 NA intron (ENSMUSG00000021567.15, intron 3 of 6) protein_coding-intron (ENSMUSG00000021567.15, intron 3 of 9) 1524 ENSMUSG00000066714.6 ENSMUSG00000066714 ENSMUST00000139696 Gm8062 processed_pseudogene Interval_100688 chr2 171610023 171610363 + 0 NA Intergenic Intergenic -303762 ENSMUSG00000088505.1 ENSMUSG00000088505 ENSMUST00000157880 Gm26489 scaRNA Interval_74113 chr17 46606111 46606309 + 0 NA intron (ENSMUSG00000023972.10, intron 1 of 19) protein_coding-intron (ENSMUSG00000023972.10, intron 1 of 19) -33260 ENSMUSG00000023972.10 ENSMUSG00000023972 ENSMUST00000044442 Ptk7 protein_coding Interval_106632 chr3 97938871 97939849 + 0 NA intron (ENSMUSG00000074388.3, intron 1 of 1) lincRNA-intron (ENSMUSG00000074388.3, intron 1 of 1) 9187 ENSMUSG00000074388.3 ENSMUSG00000074388 ENSMUST00000098828 Gm5544 lincRNA Interval_97499 chr2 137888546 137889236 + 0 NA Intergenic Intergenic -12060 ENSMUSG00000086214.1 ENSMUSG00000086214 ENSMUST00000134795 Gm14062 lincRNA Interval_62719 chr15 96441483 96442395 + 0 NA intron (ENSMUSG00000033228.8, intron 2 of 7) protein_coding-intron (ENSMUSG00000033228.8, intron 3 of 14) 2116 ENSMUSG00000033228.8 ENSMUSG00000033228 ENSMUST00000227133 Scaf11 protein_coding Interval_130036 chr5 123829299 123829675 + 0 NA Intergenic Intergenic 36012 ENSMUSG00000045502.6 ENSMUSG00000045502 ENSMUST00000057145 Hcar2 protein_coding Interval_145901 chr7 41560190 41561250 + 0 NA promoter-TSS (ENSMUSG00000090744.7) protein_coding-promoter-TSS (ENSMUSG00000090744.7) 12942 ENSMUSG00000090744.7 ENSMUSG00000090744 ENSMUST00000171059 Gm6871 protein_coding Interval_38190 chr12 76271788 76273043 + 0 NA intron (ENSMUSG00000021048.7, intron 2 of 27) protein_coding-intron (ENSMUSG00000021048.7, intron 2 of 27) 5301 ENSMUSG00000112138.1 ENSMUSG00000112138 ENSMUST00000218456 Gm47526 processed_pseudogene Interval_124589 chr5 52071758 52072599 + 0 NA Intergenic Intergenic 10154 ENSMUSG00000106292.1 ENSMUSG00000106292 ENSMUST00000195914 Gm43174 TEC Interval_118201 chr4 129500388 129501636 + 0 NA intron (ENSMUSG00000086336.1, intron 1 of 2) antisense-intron (ENSMUSG00000086336.1, intron 1 of 2) 8734 ENSMUSG00000086336.1 ENSMUSG00000086336 ENSMUST00000145488 Gm12979 antisense Interval_34670 chr12 8519188 8519727 + 0 NA intron (ENSMUSG00000112276.1, intron 1 of 2) antisense-intron (ENSMUSG00000112276.1, intron 1 of 2) 8256 ENSMUSG00000112276.1 ENSMUSG00000112276 ENSMUST00000218759 5033421B08Rik antisense Interval_168786 chr9 87048281 87048818 + 0 NA intron (ENSMUSG00000032872.16, intron 9 of 15) protein_coding-intron (ENSMUSG00000032872.16, intron 9 of 15) 26462 ENSMUSG00000032872.16 ENSMUSG00000032872 ENSMUST00000174294 Cyb5r4 protein_coding Interval_5909 chr1 93168496 93169109 + 0 NA promoter-TSS (ENSMUSG00000084989.3) protein_coding-promoter-TSS (ENSMUSG00000084989.3) 77 ENSMUSG00000084989.3 ENSMUSG00000084989 ENSMUST00000138595 Crocc2 protein_coding Interval_36335 chr12 41494633 41495236 + 0 NA intron (ENSMUSG00000056899.10, intron 3 of 5) protein_coding-intron (ENSMUSG00000056899.10, intron 4 of 6) -8503 ENSMUSG00000036295.5 ENSMUSG00000036295 ENSMUST00000043884 Lrrn3 protein_coding Interval_9342 chr1 156454475 156455409 + 0 NA promoter-TSS (ENSMUSG00000103199.1) TEC-promoter-TSS (ENSMUSG00000103199.1) -348 ENSMUSG00000103199.1 ENSMUSG00000103199 ENSMUST00000192072 Gm37648 TEC Interval_133187 chr5 150426351 150427030 + 0 NA intron (ENSMUSG00000056602.12, intron 37 of 60) protein_coding-intron (ENSMUSG00000056602.12, intron 37 of 60) 15614 ENSMUSG00000118543.1 ENSMUSG00000118543 ENSMUST00000239092 AC154885.1 unprocessed_pseudogene Interval_28479 chr11 76262375 76263424 + 0 NA intron (ENSMUSG00000020844.6, intron 6 of 7) protein_coding-intron (ENSMUSG00000020844.6, intron 6 of 7) 13687 ENSMUSG00000038046.4 ENSMUSG00000038046 ENSMUST00000155526 Mrm3 protein_coding Interval_101588 chr3 7359659 7360398 + 0 NA Intergenic Intergenic 58431 ENSMUSG00000103274.1 ENSMUSG00000103274 ENSMUST00000192071 Gm37918 processed_pseudogene Interval_18928 chr10 93194965 93195907 + 0 NA intron (ENSMUSG00000020015.10, intron 1 of 2) protein_coding-intron (ENSMUSG00000020015.10, intron 1 of 16) 32651 ENSMUSG00000089214.1 ENSMUSG00000089214 ENSMUST00000158589 Mir1931 miRNA Interval_21459 chr10 128730701 128731374 + 0 NA promoter-TSS (ENSMUSG00000025357.8) protein_coding-promoter-TSS (ENSMUSG00000025357.8) 13818 ENSMUSG00000025357.8 ENSMUSG00000025357 ENSMUST00000217957 Dgka protein_coding Interval_47319 chr13 81269097 81269467 + 0 NA intron (ENSMUSG00000069170.14, intron 3 of 7) protein_coding-intron (ENSMUSG00000069170.14, intron 85 of 89) -28498 ENSMUSG00000114939.1 ENSMUSG00000114939 ENSMUST00000225657 Gm48566 TEC Interval_87816 chr19 56220679 56221411 + 0 NA Intergenic Intergenic 56600 ENSMUSG00000077223.1 ENSMUSG00000077223 ENSMUST00000104035 Gm22271 snoRNA Interval_119632 chr4 138863203 138863696 + 0 NA promoter-TSS (ENSMUSG00000041193.15) protein_coding-promoter-TSS (ENSMUSG00000041193.15) 10515 ENSMUSG00000078518.1 ENSMUSG00000078518 ENSMUST00000105805 Gm13030 protein_coding Interval_41005 chr12 110549841 110550768 + 0 NA intron (ENSMUSG00000017843.14, intron 7 of 12) protein_coding-intron (ENSMUSG00000017843.14, intron 5 of 13) -40208 ENSMUSG00000113361.1 ENSMUSG00000113361 ENSMUST00000221143 B930059L03Rik lincRNA Interval_10819 chr1 175602481 175603274 + 0 NA intron (ENSMUSG00000026526.14, intron 3 of 3) protein_coding-intron (ENSMUSG00000026526.14, intron 9 of 9) 6836 ENSMUSG00000026526.14 ENSMUSG00000026526 ENSMUST00000154956 Fh1 protein_coding Interval_168834 chr9 87784930 87785473 + 0 NA Intergenic Intergenic 15431 ENSMUSG00000102043.1 ENSMUSG00000102043 ENSMUST00000188409 Gm9541 processed_pseudogene Interval_13106 chr10 11438653 11439787 + 0 NA intron (ENSMUSG00000055493.4, intron 2 of 3) protein_coding-intron (ENSMUSG00000055493.4, intron 2 of 3) -51617 ENSMUSG00000090242.1 ENSMUSG00000090242 ENSMUST00000161946 Rpl17-ps11 processed_pseudogene Interval_92444 chr2 59755990 59757177 + 0 NA intron (ENSMUSG00000035168.16, intron 1 of 15) protein_coding-intron (ENSMUSG00000035168.16, intron 4 of 26) -49485 ENSMUSG00000035168.16 ENSMUSG00000035168 ENSMUST00000147650 Tanc1 protein_coding Interval_122886 chr5 26903630 26905181 + 0 NA promoter-TSS (ENSMUSG00000061576.15) protein_coding-promoter-TSS (ENSMUSG00000061576.15) -44304 ENSMUSG00000080941.1 ENSMUSG00000080941 ENSMUST00000119293 Gm16056 processed_pseudogene Interval_55939 chr14 102993641 102993962 + 0 NA intron (ENSMUSG00000114980.1, intron 2 of 2) lincRNA-intron (ENSMUSG00000114980.1, intron 2 of 2) -11164 ENSMUSG00000098557.1 ENSMUSG00000098557 ENSMUST00000183756 Kctd12 protein_coding Interval_54748 chr14 74709047 74709897 + 0 NA TTS (ENSMUSG00000034997.5) protein_coding-TTS (ENSMUSG00000034997.5) -8240 ENSMUSG00000115288.1 ENSMUSG00000115288 ENSMUST00000226155 Gm9212 processed_pseudogene Interval_23670 chr11 24278630 24279802 + 0 NA Intergenic Intergenic -76592 ENSMUSG00000086117.1 ENSMUSG00000086117 ENSMUST00000149592 Gm12065 lincRNA Interval_86595 chr19 41952241 41952488 + 0 NA TTS (ENSMUSG00000025159.8) protein_coding-TTS (ENSMUSG00000025159.8) 14696 ENSMUSG00000025157.8 ENSMUSG00000025157 ENSMUST00000223802 Zdhhc16 protein_coding Interval_55639 chr14 97417553 97417821 + 0 NA Intergenic Intergenic -81055 ENSMUSG00000088538.1 ENSMUSG00000088538 ENSMUST00000157913 Gm23276 snoRNA Interval_114262 chr4 70301149 70301644 + 0 NA intron (ENSMUSG00000039298.16, intron 16 of 36) protein_coding-intron (ENSMUSG00000039298.16, intron 13 of 33) -52023 ENSMUSG00000080902.1 ENSMUSG00000080902 ENSMUST00000120944 Ywhaq-ps3 transcribed_processed_pseudogene Interval_10393 chr1 170301038 170301492 + 0 NA exon (ENSMUSG00000102752.1, exon 3 of 3) protein_coding-exon (ENSMUSG00000102752.1, exon 3 of 3) 5067 ENSMUSG00000102752.1 ENSMUSG00000102752 ENSMUST00000179801 Gm7694 protein_coding Interval_145156 chr7 30346772 30348388 + 0 NA TTS (ENSMUSG00000109049.1) lincRNA-TTS (ENSMUSG00000109049.1) 5741 ENSMUSG00000109049.1 ENSMUSG00000109049 ENSMUST00000208824 4930479H17Rik lincRNA Interval_26774 chr11 60383704 60385618 + 0 NA intron (ENSMUSG00000056598.16, intron 10 of 13) protein_coding-intron (ENSMUSG00000056598.16, intron 10 of 13) 31304 ENSMUSG00000056598.16 ENSMUSG00000056598 ENSMUST00000108722 Drc3 protein_coding Interval_70569 chr17 12075824 12075993 + 0 NA Intergenic Intergenic -43421 ENSMUSG00000023827.8 ENSMUSG00000023827 ENSMUST00000167905 Agpat4 protein_coding Interval_147003 chr7 57845000 57845363 + 0 NA Intergenic Intergenic 36045 ENSMUSG00000109086.1 ENSMUSG00000109086 ENSMUST00000207988 Gm5596 processed_pseudogene Interval_134578 chr6 29711985 29712432 + 0 NA intron (ENSMUSG00000001763.14, intron 3 of 3) protein_coding-intron (ENSMUSG00000001763.14, intron 4 of 7) 4180 ENSMUSG00000001763.14 ENSMUSG00000001763 ENSMUST00000137925 Tspan33 protein_coding Interval_158593 chr8 84668516 84669474 + 0 NA TTS (ENSMUSG00000118487.1) unitary_pseudogene-TTS (ENSMUSG00000118487.1) 3550 ENSMUSG00000118487.1 ENSMUSG00000118487 ENSMUST00000238703 Gm50464 unitary_pseudogene Interval_39132 chr12 85346543 85346791 + 0 NA intron (ENSMUSG00000021248.9, intron 3 of 4) protein_coding-intron (ENSMUSG00000021248.9, intron 3 of 4) -7305 ENSMUSG00000034290.9 ENSMUSG00000034290 ENSMUST00000040992 Nek9 protein_coding Interval_50195 chr14 9327460 9327930 + 0 NA Intergenic Intergenic -72929 ENSMUSG00000114615.1 ENSMUSG00000114615 ENSMUST00000224264 Gm48370 lincRNA Interval_103437 chr3 41570763 41571855 + 0 NA intron (ENSMUSG00000025764.14, intron 1 of 8) protein_coding-intron (ENSMUSG00000025764.14, intron 1 of 10) -7611 ENSMUSG00000103843.1 ENSMUSG00000103843 ENSMUST00000192060 Gm31266 antisense Interval_80162 chr18 37948871 37950181 + 0 NA intron (ENSMUSG00000024454.16, intron 2 of 7) protein_coding-intron (ENSMUSG00000024454.16, intron 3 of 14) 5392 ENSMUSG00000024454.16 ENSMUSG00000024454 ENSMUST00000235700 Hdac3 protein_coding Interval_107957 chr3 117451486 117451894 + 0 NA Intergenic Intergenic -33394 ENSMUSG00000033342.15 ENSMUSG00000033342 ENSMUST00000106473 Plppr5 protein_coding Interval_80779 chr18 47007816 47008285 + 0 NA intron (ENSMUSG00000042705.9, intron 5 of 6) protein_coding-intron (ENSMUSG00000042705.9, intron 5 of 6) -22569 ENSMUSG00000087857.1 ENSMUSG00000087857 ENSMUST00000157232 Gm22791 snoRNA Interval_41483 chr12 114964054 114965208 + 0 NA promoter-TSS (ENSMUSG00000103300.1) IG_V_pseudogene-promoter-TSS (ENSMUSG00000103300.1) -818 ENSMUSG00000103300.1 ENSMUSG00000103300 ENSMUST00000195597 Ighv1-44 IG_V_pseudogene Interval_60560 chr15 74954927 74956425 + 0 NA promoter-TSS (ENSMUSG00000022587.14) protein_coding-promoter-TSS (ENSMUSG00000022587.14) -7 ENSMUSG00000022587.14 ENSMUSG00000022587 ENSMUST00000188042 Ly6e protein_coding Interval_23663 chr11 24209053 24209469 + 0 NA intron (ENSMUSG00000085579.1, intron 1 of 3) lincRNA-intron (ENSMUSG00000085579.1, intron 1 of 3) -6637 ENSMUSG00000086117.1 ENSMUSG00000086117 ENSMUST00000149592 Gm12065 lincRNA Interval_131736 chr5 139570990 139571425 + 0 NA Intergenic Intergenic 27309 ENSMUSG00000029546.12 ENSMUSG00000029546 ENSMUST00000174792 Uncx protein_coding Interval_160614 chr8 111055869 111057199 + 0 NA exon (ENSMUSG00000031960.14, exon 21 of 21) protein_coding-exon (ENSMUSG00000031960.14, exon 21 of 21) 195 ENSMUSG00000109941.1 ENSMUSG00000109941 ENSMUST00000210390 Exosc6 protein_coding Interval_122312 chr5 21183114 21183616 + 0 NA Intergenic Intergenic -30644 ENSMUSG00000104920.1 ENSMUSG00000104920 ENSMUST00000199108 Gm43215 processed_pseudogene Interval_89446 chr2 20712226 20712737 + 0 NA promoter-TSS (ENSMUSG00000036617.17) protein_coding-promoter-TSS (ENSMUSG00000036617.17) 753 ENSMUSG00000086418.1 ENSMUSG00000086418 ENSMUST00000137186 Gm13362 antisense Interval_120049 chr4 141529014 141529741 + 0 NA intron (ENSMUSG00000040761.16, intron 1 of 1) protein_coding-intron (ENSMUSG00000040761.16, intron 1 of 14) -16812 ENSMUSG00000048406.5 ENSMUSG00000048406 ENSMUST00000049927 B330016D10Rik pseudogene Interval_119908 chr4 140835180 140836154 + 0 NA intron (ENSMUSG00000025329.3, intron 1 of 15) protein_coding-intron (ENSMUSG00000025329.3, intron 1 of 15) 10111 ENSMUSG00000025329.3 ENSMUSG00000025329 ENSMUST00000026378 Padi1 protein_coding Interval_151565 chr7 123796020 123796215 + 0 NA Intergenic Intergenic 146092 ENSMUSG00000084484.1 ENSMUSG00000084484 ENSMUST00000122535 Gm23788 snRNA Interval_55000 chr14 76767494 76768704 + 0 NA Intergenic Intergenic 7968 ENSMUSG00000115709.1 ENSMUSG00000115709 ENSMUST00000228541 4930431P22Rik lincRNA Interval_23241 chr11 20816719 20817105 + 0 NA Intergenic Intergenic 14144 ENSMUSG00000042363.14 ENSMUSG00000042363 ENSMUST00000132928 Lgalsl protein_coding Interval_166198 chr9 57449895 57450348 + 0 NA intron (ENSMUSG00000040722.7, intron 3 of 4) protein_coding-intron (ENSMUSG00000040722.7, intron 3 of 6) 17916 ENSMUSG00000040722.7 ENSMUSG00000040722 ENSMUST00000215059 Scamp5 protein_coding Interval_102456 chr3 26834027 26835727 + 0 NA intron (ENSMUSG00000039335.11, intron 4 of 9) protein_coding-intron (ENSMUSG00000039335.11, intron 4 of 10) -177887 ENSMUSG00000103712.1 ENSMUSG00000103712 ENSMUST00000194574 Gm37659 processed_pseudogene Interval_139665 chr6 106358610 106359309 + 0 NA intron (ENSMUSG00000064293.14, intron 4 of 9) protein_coding-intron (ENSMUSG00000064293.14, intron 4 of 15) -296544 ENSMUSG00000064293.14 ENSMUSG00000064293 ENSMUST00000142626 Cntn4 protein_coding Interval_115489 chr4 99348455 99349251 + 0 NA Intergenic Intergenic 36859 ENSMUSG00000103097.1 ENSMUSG00000103097 ENSMUST00000193877 Gm37556 TEC Interval_104680 chr3 69365301 69365787 + 0 NA intron (ENSMUSG00000027784.10, intron 1 of 3) protein_coding-intron (ENSMUSG00000027784.10, intron 1 of 3) -29784 ENSMUSG00000090941.1 ENSMUSG00000090941 ENSMUST00000166666 Gm17212 processed_pseudogene Interval_35122 chr12 17435412 17436108 + 0 NA promoter-TSS (ENSMUSG00000113246.1) lincRNA-promoter-TSS (ENSMUSG00000113246.1) -858 ENSMUSG00000113246.1 ENSMUSG00000113246 ENSMUST00000220527 Gm36752 lincRNA Interval_35649 chr12 26606370 26607354 + 0 NA intron (ENSMUSG00000113524.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000113524.1, intron 1 of 2) -4553 ENSMUSG00000113628.1 ENSMUSG00000113628 ENSMUST00000221140 1700020D12Rik lincRNA Interval_52493 chr14 46967975 46968227 + 0 NA intron (ENSMUSG00000021838.17, intron 3 of 12) protein_coding-intron (ENSMUSG00000021838.17, intron 2 of 12) 6661 ENSMUSG00000089870.1 ENSMUSG00000089870 ENSMUST00000161397 Gm15562 sense_intronic Interval_153332 chr7 143680371 143680666 + 0 NA intron (ENSMUSG00000037613.16, intron 2 of 4) protein_coding-intron (ENSMUSG00000037613.16, intron 2 of 5) 5354 ENSMUSG00000037613.16 ENSMUSG00000037613 ENSMUST00000208613 Tnfrsf23 protein_coding Interval_28222 chr11 74467514 74467902 + 0 NA intron (ENSMUSG00000038807.19, intron 4 of 25) protein_coding-intron (ENSMUSG00000038807.19, intron 4 of 25) 105639 ENSMUSG00000058275.3 ENSMUSG00000058275 ENSMUST00000077794 Olfr412 protein_coding Interval_106414 chr3 96059667 96059931 + 0 NA Intergenic Intergenic -2080 ENSMUSG00000015747.5 ENSMUSG00000015747 ENSMUST00000140518 Vps45 protein_coding Interval_141223 chr6 125743401 125744648 + 0 NA intron (ENSMUSG00000038115.16, intron 2 of 25) protein_coding-intron (ENSMUSG00000038115.16, intron 3 of 15) 4618 ENSMUSG00000089834.2 ENSMUSG00000089834 ENSMUST00000161498 Gm16303 processed_pseudogene Interval_140166 chr6 114951294 114951619 + 0 NA intron (ENSMUSG00000030315.15, intron 2 of 5) protein_coding-intron (ENSMUSG00000030315.15, intron 2 of 4) -29640 ENSMUSG00000030315.15 ENSMUSG00000030315 ENSMUST00000204693 Vgll4 protein_coding Interval_128735 chr5 114996406 114996825 + 0 NA intron (ENSMUSG00000086054.2, intron 2 of 2) antisense-intron (ENSMUSG00000086054.2, intron 1 of 1) 21159 ENSMUSG00000106838.1 ENSMUSG00000106838 ENSMUST00000202592 1810017P11Rik TEC Interval_42515 chr13 14365767 14366210 + 0 NA intron (ENSMUSG00000021301.9, intron 4 of 7) protein_coding-intron (ENSMUSG00000021301.9, intron 4 of 28) 13585 ENSMUSG00000113981.1 ENSMUSG00000113981 ENSMUST00000222578 Gm47011 TEC Interval_24127 chr11 30608824 30609127 + 0 NA intron (ENSMUSG00000060923.5, intron 3 of 3) protein_coding-intron (ENSMUSG00000060923.5, intron 3 of 3) -34521 ENSMUSG00000081887.1 ENSMUSG00000081887 ENSMUST00000121523 Gm12097 processed_pseudogene Interval_41249 chr12 112143422 112146963 + 0 NA Intergenic Intergenic 14312 ENSMUSG00000065574.1 ENSMUSG00000065574 ENSMUST00000083640 Mir203 miRNA Interval_64113 chr16 8492083 8492478 + 0 NA Intergenic Intergenic -11539 ENSMUSG00000077557.1 ENSMUSG00000077557 ENSMUST00000104369 Gm23706 snoRNA Interval_8303 chr1 137051088 137052626 + 0 NA Intergenic Intergenic -61587 ENSMUSG00000088970.1 ENSMUSG00000088970 ENSMUST00000158345 Gm23763 snRNA Interval_167994 chr9 75313554 75314932 + 0 NA exon (ENSMUSG00000032192.9, exon 1 of 7) protein_coding-exon (ENSMUSG00000032192.9, exon 1 of 7) 628 ENSMUSG00000111348.1 ENSMUSG00000111348 ENSMUST00000216737 Gm19531 antisense Interval_90362 chr2 29981712 29982442 + 0 NA intron (ENSMUSG00000057738.14, intron 3 of 10) protein_coding-intron (ENSMUSG00000057738.14, intron 3 of 54) 2000 ENSMUSG00000057738.14 ENSMUSG00000057738 ENSMUST00000201758 Sptan1 protein_coding Interval_64682 chr16 14147636 14148136 + 0 NA intron (ENSMUSG00000060657.8, intron 6 of 10) protein_coding-intron (ENSMUSG00000060657.8, intron 5 of 26) -5346 ENSMUSG00000060657.8 ENSMUSG00000060657 ENSMUST00000229614 Marf1 protein_coding Interval_24579 chr11 34775825 34776163 + 0 NA intron (ENSMUSG00000020143.15, intron 1 of 26) protein_coding-intron (ENSMUSG00000020143.15, intron 1 of 51) 47957 ENSMUSG00000069910.2 ENSMUSG00000069910 ENSMUST00000148387 Spdl1 protein_coding Interval_86684 chr19 42591542 42591873 + 0 NA TTS (ENSMUSG00000025184.10) protein_coding-TTS (ENSMUSG00000025184.10) 10546 ENSMUSG00000025184.10 ENSMUSG00000025184 ENSMUST00000162238 R3hcc1l protein_coding Interval_80596 chr18 44510566 44511340 + 0 NA intron (ENSMUSG00000071856.10, intron 3 of 16) protein_coding-intron (ENSMUSG00000071856.10, intron 5 of 18) 130451 ENSMUSG00000024472.9 ENSMUSG00000024472 ENSMUST00000025350 Dcp2 protein_coding Interval_106662 chr3 98262707 98263506 + 0 NA Intergenic Intergenic 14507 ENSMUSG00000104842.1 ENSMUSG00000104842 ENSMUST00000199771 Gm42821 processed_pseudogene Interval_61854 chr15 84692842 84693236 + 0 NA intron (ENSMUSG00000036106.15, intron 3 of 8) protein_coding-intron (ENSMUSG00000036106.15, intron 2 of 7) 23419 ENSMUSG00000036106.15 ENSMUSG00000036106 ENSMUST00000065499 Prr5 protein_coding Interval_168134 chr9 77435287 77435514 + 0 NA intron (ENSMUSG00000032352.16, intron 1 of 2) protein_coding-intron (ENSMUSG00000032352.16, intron 11 of 13) -35982 ENSMUSG00000099170.1 ENSMUSG00000099170 ENSMUST00000183878 5730403I07Rik lincRNA Interval_81862 chr18 65438400 65438770 + 0 NA exon (ENSMUSG00000032688.9, exon 2 of 2) protein_coding-exon (ENSMUSG00000032688.9, exon 2 of 2) 7574 ENSMUSG00000032688.9 ENSMUSG00000032688 ENSMUST00000235999 Malt1 protein_coding Interval_95107 chr2 103958441 103958742 + 0 NA intron (ENSMUSG00000032698.15, intron 1 of 3) protein_coding-intron (ENSMUSG00000032698.15, intron 1 of 3) 596 ENSMUSG00000032698.15 ENSMUSG00000032698 ENSMUST00000133210 Lmo2 protein_coding Interval_38943 chr12 83998147 83998642 + 0 NA Intergenic Intergenic 10533 ENSMUSG00000021226.7 ENSMUSG00000021226 ENSMUST00000021649 Acot2 protein_coding Interval_14692 chr10 39066921 39067812 + 0 NA intron (ENSMUSG00000019846.11, intron 16 of 37) protein_coding-intron (ENSMUSG00000019846.11, intron 16 of 37) -38415 ENSMUSG00000019846.11 ENSMUSG00000019846 ENSMUST00000163036 Lama4 protein_coding Interval_55266 chr14 79808953 79809514 + 0 NA Intergenic Intergenic -37921 ENSMUSG00000036422.10 ENSMUSG00000036422 ENSMUST00000194214 Pcdh8 protein_coding Interval_52559 chr14 47495701 47496481 + 0 NA intron (ENSMUSG00000037536.14, intron 1 of 3) protein_coding-intron (ENSMUSG00000037536.14, intron 1 of 1) 4523 ENSMUSG00000115570.1 ENSMUSG00000115570 ENSMUST00000228735 Gm48986 TEC Interval_150384 chr7 110055852 110056182 + 0 NA TTS (ENSMUSG00000066232.4) protein_coding-TTS (ENSMUSG00000066232.4) 5308 ENSMUSG00000073867.2 ENSMUSG00000073867 ENSMUST00000098110 AA474408 TEC Interval_12785 chr10 5348776 5349138 + 0 NA exon (ENSMUSG00000096054.3, exon 25 of 32) protein_coding-exon (ENSMUSG00000096054.3, exon 25 of 32) -8216 ENSMUSG00000094906.1 ENSMUSG00000094906 ENSMUST00000104408 Gm23573 snRNA Interval_133323 chr5 151718221 151718515 + 0 NA Intergenic Intergenic -15900 ENSMUSG00000092806.2 ENSMUSG00000092806 ENSMUST00000175065 Gm26463 miRNA Interval_69801 chr16 96673277 96673836 + 0 NA intron (ENSMUSG00000050272.10, intron 20 of 32) protein_coding-intron (ENSMUSG00000050272.10, intron 20 of 32) 39186 ENSMUSG00000117179.1 ENSMUSG00000117179 ENSMUST00000233591 Gm49907 antisense Interval_146900 chr7 55671473 55671709 + 0 NA Intergenic Intergenic -30563 ENSMUSG00000088640.1 ENSMUSG00000088640 ENSMUST00000158015 Gm26482 snRNA Interval_30528 chr11 94951015 94951375 + 0 NA exon (ENSMUSG00000001506.10, exon 50 of 51) protein_coding-exon (ENSMUSG00000001506.10, exon 50 of 51) -7583 ENSMUSG00000089404.1 ENSMUSG00000089404 ENSMUST00000158779 Gm24877 misc_RNA Interval_18095 chr10 82334171 82334612 + 0 NA Intergenic Intergenic -17809 ENSMUSG00000044581.8 ENSMUSG00000044581 ENSMUST00000217661 4932415D10Rik protein_coding Interval_11864 chr1 186564487 186565272 + 0 NA Intergenic Intergenic -6198 ENSMUSG00000103690.1 ENSMUSG00000103690 ENSMUST00000195454 A730004F24Rik lincRNA Interval_163538 chr9 21970733 21971432 + 0 NA TTS (ENSMUSG00000040146.9) protein_coding-TTS (ENSMUSG00000040146.9) -8518 ENSMUSG00000006235.6 ENSMUSG00000006235 ENSMUST00000213181 Epor protein_coding Interval_2907 chr1 49232617 49233269 + 0 NA Intergenic Intergenic -3309 ENSMUSG00000099454.1 ENSMUSG00000099454 ENSMUST00000186145 Gm8367 processed_pseudogene Interval_72708 chr17 31664549 31665256 + 0 NA Intergenic Intergenic -6138 ENSMUSG00000061613.13 ENSMUSG00000061613 ENSMUST00000235969 U2af1 protein_coding Interval_72741 chr17 31865605 31866316 + 0 NA Intergenic Intergenic -14385 ENSMUSG00000024042.7 ENSMUSG00000024042 ENSMUST00000234142 Sik1 protein_coding Interval_107665 chr3 109782048 109783032 + 0 NA TTS (ENSMUSG00000059857.15) protein_coding-TTS (ENSMUSG00000059857.15) 50719 ENSMUSG00000059857.15 ENSMUSG00000059857 ENSMUST00000051253 Ntng1 protein_coding Interval_158637 chr8 84908070 84909144 + 0 NA promoter-TSS (ENSMUSG00000003812.13) protein_coding-promoter-TSS (ENSMUSG00000003812.13) -40 ENSMUSG00000003812.13 ENSMUSG00000003812 ENSMUST00000148573 Dnase2a protein_coding Interval_139137 chr6 95800289 95800854 + 0 NA Intergenic Intergenic 126358 ENSMUSG00000107856.1 ENSMUSG00000107856 ENSMUST00000203221 Gm7838 processed_pseudogene Interval_117325 chr4 123004820 123005746 + 0 NA Intergenic Intergenic 5944 ENSMUSG00000028654.13 ENSMUSG00000028654 ENSMUST00000147259 Mycl protein_coding Interval_171896 chr9 122188876 122189164 + 0 NA intron (ENSMUSG00000037949.8, intron 12 of 12) protein_coding-intron (ENSMUSG00000037949.8, intron 12 of 12) 46571 ENSMUSG00000111434.1 ENSMUSG00000111434 ENSMUST00000213905 Gm47121 sense_intronic Interval_105426 chr3 86187503 86187903 + 0 NA Intergenic Intergenic -3713 ENSMUSG00000089394.1 ENSMUSG00000089394 ENSMUST00000158769 Gm23025 snRNA Interval_83906 chr19 5490312 5491687 + 0 NA intron (ENSMUSG00000056201.8, intron 1 of 2) protein_coding-intron (ENSMUSG00000056201.8, intron 1 of 5) 434 ENSMUSG00000056201.8 ENSMUSG00000056201 ENSMUST00000237122 Cfl1 protein_coding Interval_111956 chr4 32810797 32811055 + 0 NA intron (ENSMUSG00000040183.13, intron 10 of 12) protein_coding-intron (ENSMUSG00000040183.13, intron 14 of 16) 10647 ENSMUSG00000045854.4 ENSMUSG00000045854 ENSMUST00000130321 Lyrm2 protein_coding Interval_81383 chr18 60069943 60070262 + 0 NA Intergenic Intergenic -104215 ENSMUSG00000094901.1 ENSMUSG00000094901 ENSMUST00000179918 Gm23576 miRNA Interval_85685 chr19 29664681 29665430 + 0 NA Intergenic Intergenic -19028 ENSMUSG00000046324.12 ENSMUSG00000046324 ENSMUST00000160907 Ermp1 protein_coding Interval_60404 chr15 73539483 73539705 + 0 NA intron (ENSMUSG00000036661.14, intron 5 of 11) protein_coding-intron (ENSMUSG00000036661.14, intron 8 of 22) 26922 ENSMUSG00000036661.14 ENSMUSG00000036661 ENSMUST00000160727 Dennd3 protein_coding Interval_29013 chr11 79912472 79912663 + 0 NA Intergenic Intergenic 6586 ENSMUSG00000082252.1 ENSMUSG00000082252 ENSMUST00000122438 Gm11204 processed_pseudogene Interval_157768 chr8 72912018 72912453 + 0 NA intron (ENSMUSG00000004383.18, intron 7 of 15) protein_coding-intron (ENSMUSG00000004383.18, intron 6 of 14) -104277 ENSMUSG00000093140.1 ENSMUSG00000093140 ENSMUST00000175399 Mir28b miRNA Interval_123838 chr5 35857875 35858556 + 0 NA TTS (ENSMUSG00000029095.17) protein_coding-TTS (ENSMUSG00000029095.17) 321 ENSMUSG00000029095.17 ENSMUSG00000029095 ENSMUST00000153529 Ablim2 protein_coding Interval_148203 chr7 79792372 79793944 + 0 NA exon (ENSMUSG00000030544.5, exon 1 of 2) protein_coding-exon (ENSMUSG00000030544.5, exon 1 of 2) 630 ENSMUSG00000030544.5 ENSMUSG00000030544 ENSMUST00000032760 Mesp1 protein_coding Interval_150317 chr7 109566354 109567684 + 0 NA intron (ENSMUSG00000031024.13, intron 1 of 1) protein_coding-intron (ENSMUSG00000031024.13, intron 2 of 19) 45739 ENSMUSG00000077575.1 ENSMUSG00000077575 ENSMUST00000104387 Gm24888 snoRNA Interval_112612 chr4 43561872 43563111 + 0 NA promoter-TSS (ENSMUSG00000028465.16) protein_coding-promoter-TSS (ENSMUSG00000028465.16) -322 ENSMUSG00000028466.15 ENSMUSG00000028466 ENSMUST00000138623 Creb3 protein_coding Interval_154353 chr8 14931516 14932169 + 0 NA intron (ENSMUSG00000071176.10, intron 4 of 15) protein_coding-intron (ENSMUSG00000071176.10, intron 4 of 28) -13459 ENSMUSG00000071176.10 ENSMUSG00000071176 ENSMUST00000162636 Arhgef10 protein_coding Interval_8194 chr1 136414910 136415707 + 0 NA promoter-TSS (ENSMUSG00000026404.12) protein_coding-promoter-TSS (ENSMUSG00000026404.12) 186 ENSMUSG00000097403.2 ENSMUSG00000097403 ENSMUST00000194227 9230116N13Rik processed_transcript Interval_167245 chr9 66632290 66633084 + 0 NA Intergenic Intergenic -39681 ENSMUSG00000032376.12 ENSMUSG00000032376 ENSMUST00000139952 Usp3 protein_coding Interval_84085 chr19 7121356 7121637 + 0 NA intron (ENSMUSG00000036278.7, intron 3 of 10) protein_coding-intron (ENSMUSG00000036278.7, intron 3 of 10) -15767 ENSMUSG00000047787.8 ENSMUSG00000047787 ENSMUST00000113383 Flrt1 protein_coding Interval_89776 chr2 25376572 25377002 + 0 NA TTS (ENSMUSG00000026955.13) protein_coding-TTS (ENSMUSG00000026955.13) 4427 ENSMUSG00000026955.13 ENSMUSG00000026955 ENSMUST00000129214 Sapcd2 protein_coding Interval_71952 chr17 27189485 27191015 + 0 NA exon (ENSMUSG00000044857.8, exon 9 of 9) protein_coding-exon (ENSMUSG00000044857.8, exon 9 of 9) 3230 ENSMUSG00000044857.8 ENSMUSG00000044857 ENSMUST00000236055 Lemd2 protein_coding Interval_9845 chr1 163023455 163023631 + 0 NA TTS (ENSMUSG00000071890.4) protein_coding-TTS (ENSMUSG00000071890.4) 31408 ENSMUSG00000077608.1 ENSMUSG00000077608 ENSMUST00000104420 Gm22671 snoRNA Interval_75476 chr17 67073064 67073380 + 0 NA intron (ENSMUSG00000033278.10, intron 4 of 19) protein_coding-intron (ENSMUSG00000033278.10, intron 4 of 32) -46987 ENSMUSG00000093508.1 ENSMUSG00000093508 ENSMUST00000176783 Mir5709 miRNA Interval_105005 chr3 79664453 79665221 + 0 NA intron (ENSMUSG00000034009.14, intron 3 of 8) protein_coding-intron (ENSMUSG00000034009.14, intron 9 of 17) -11326 ENSMUSG00000034009.14 ENSMUSG00000034009 ENSMUST00000183040 Rxfp1 protein_coding Interval_163625 chr9 22697990 22698815 + 0 NA intron (ENSMUSG00000035919.16, intron 19 of 22) protein_coding-intron (ENSMUSG00000035919.16, intron 18 of 21) -20084 ENSMUSG00000089909.1 ENSMUSG00000089909 ENSMUST00000160078 Gm16164 processed_pseudogene Interval_111108 chr4 12115374 12116115 + 0 NA exon (ENSMUSG00000083246.1, exon 1 of 1) processed_pseudogene-exon (ENSMUSG00000083246.1, exon 1 of 1) 1460 ENSMUSG00000083246.1 ENSMUSG00000083246 ENSMUST00000120647 Gm11839 processed_pseudogene Interval_61686 chr15 83402660 83404283 + 0 NA intron (ENSMUSG00000016664.16, intron 1 of 11) protein_coding-intron (ENSMUSG00000016664.16, intron 1 of 11) 2592 ENSMUSG00000049414.7 ENSMUSG00000049414 ENSMUST00000079706 Gm5417 processed_pseudogene Interval_40987 chr12 110453842 110454703 + 0 NA intron (ENSMUSG00000017843.14, intron 2 of 12) protein_coding-intron (ENSMUSG00000017843.14, intron 2 of 7) 6965 ENSMUSG00000017843.14 ENSMUSG00000017843 ENSMUST00000221074 Ppp2r5c protein_coding Interval_14842 chr10 40419921 40420295 + 0 NA intron (ENSMUSG00000038481.13, intron 2 of 11) protein_coding-intron (ENSMUSG00000038481.13, intron 2 of 12) -70005 ENSMUSG00000038491.9 ENSMUSG00000038491 ENSMUST00000044774 Cdk19os antisense Interval_37153 chr12 59031944 59032823 + 0 NA Intergenic Intergenic 7717 ENSMUSG00000060121.15 ENSMUSG00000060121 ENSMUST00000182710 Gemin2 protein_coding Interval_60243 chr15 68977581 68977940 + 0 NA intron (ENSMUSG00000116092.1, intron 1 of 1) protein_coding-intron (ENSMUSG00000022332.8, intron 1 of 8) 18229 ENSMUSG00000116092.1 ENSMUSG00000116092 ENSMUST00000230699 Gm49422 sense_intronic Interval_25059 chr11 43570335 43570658 + 0 NA intron (ENSMUSG00000044707.7, intron 3 of 5) protein_coding-intron (ENSMUSG00000044707.7, intron 3 of 5) 10620 ENSMUSG00000085239.1 ENSMUSG00000085239 ENSMUST00000130874 Gm12150 antisense Interval_42530 chr13 14618408 14619396 + 0 NA intron (ENSMUSG00000015671.11, intron 1 of 6) protein_coding-intron (ENSMUSG00000015671.11, intron 3 of 7) 2130 ENSMUSG00000015671.11 ENSMUSG00000015671 ENSMUST00000221168 Psma2 protein_coding Interval_24954 chr11 41962871 41963756 + 0 NA intron (ENSMUSG00000087306.7, intron 5 of 5) protein_coding-intron (ENSMUSG00000020436.17, intron 6 of 8) -46690 ENSMUSG00000020436.17 ENSMUSG00000020436 ENSMUST00000109290 Gabrg2 protein_coding Interval_144571 chr7 26134652 26135124 + 0 NA exon (ENSMUSG00000108544.1, exon 7 of 7) unprocessed_pseudogene-exon (ENSMUSG00000108544.1, exon 7 of 7) 13704 ENSMUSG00000108544.1 ENSMUSG00000108544 ENSMUST00000206238 Cyp2b26-ps unprocessed_pseudogene Interval_14342 chr10 31131349 31131913 + 0 NA Intergenic Intergenic 32001 ENSMUSG00000095305.1 ENSMUSG00000095305 ENSMUST00000083013 Gm23790 snRNA Interval_8120 chr1 135820098 135820369 + 0 NA intron (ENSMUSG00000041782.14, intron 1 of 9) protein_coding-intron (ENSMUSG00000041782.14, intron 1 of 9) -9762 ENSMUSG00000041782.14 ENSMUSG00000041782 ENSMUST00000185756 Lad1 protein_coding Interval_17206 chr10 74972728 74973519 + 0 NA intron (ENSMUSG00000040009.6, intron 1 of 1) protein_coding-intron (ENSMUSG00000009070.14, intron 4 of 6) 5914 ENSMUSG00000040009.6 ENSMUSG00000040009 ENSMUST00000159991 Gnaz protein_coding Interval_33342 chr11 116029920 116031504 + 0 NA intron (ENSMUSG00000020770.13, intron 1 of 15) protein_coding-intron (ENSMUSG00000020770.13, intron 1 of 15) 389 ENSMUSG00000020770.13 ENSMUSG00000020770 ENSMUST00000140683 Unk protein_coding Interval_76535 chr17 80824745 80828324 + 0 NA Intergenic Intergenic -70259 ENSMUSG00000112121.1 ENSMUSG00000112121 ENSMUST00000220067 C230072F16Rik lincRNA Interval_68098 chr16 65037988 65038469 + 0 NA intron (ENSMUSG00000050783.5, intron 2 of 2) protein_coding-intron (ENSMUSG00000050783.5, intron 2 of 2) 67626 ENSMUSG00000050783.5 ENSMUSG00000050783 ENSMUST00000063076 Htr1f protein_coding Interval_45563 chr13 55897493 55898916 + 0 NA intron (ENSMUSG00000114493.2, intron 2 of 5) antisense-intron (ENSMUSG00000114493.2, intron 2 of 5) -62012 ENSMUSG00000021506.7 ENSMUSG00000021506 ENSMUST00000173618 Pitx1 protein_coding Interval_22320 chr11 8754164 8755558 + 0 NA Intergenic Intergenic 51987 ENSMUSG00000081539.1 ENSMUSG00000081539 ENSMUST00000121505 Gm11990 processed_pseudogene Interval_43381 chr13 29924546 29924830 + 0 NA intron (ENSMUSG00000016477.18, intron 1 of 6) protein_coding-intron (ENSMUSG00000016477.18, intron 1 of 6) -15595 ENSMUSG00000086893.1 ENSMUSG00000086893 ENSMUST00000144277 Gm11365 antisense Interval_125205 chr5 65344338 65344784 + 0 NA Intergenic Intergenic -3847 ENSMUSG00000029195.10 ENSMUSG00000029195 ENSMUST00000205084 Klb protein_coding Interval_105758 chr3 89177020 89178123 + 0 NA promoter-TSS (ENSMUSG00000028049.15) protein_coding-promoter-TSS (ENSMUSG00000028049.15) 40 ENSMUSG00000028049.15 ENSMUSG00000028049 ENSMUST00000124291 Scamp3 protein_coding Interval_144815 chr7 28401363 28401833 + 0 NA exon (ENSMUSG00000109336.1, exon 13 of 13) protein_coding-exon (ENSMUSG00000109336.1, exon 13 of 13) 6835 ENSMUSG00000003437.14 ENSMUSG00000003437 ENSMUST00000146913 Paf1 protein_coding Interval_17532 chr10 77568880 77570226 + 0 NA Intergenic Intergenic -12170 ENSMUSG00000009291.13 ENSMUSG00000009291 ENSMUST00000167006 Pttg1ip protein_coding Interval_30957 chr11 97415427 97416765 + 0 NA intron (ENSMUSG00000049807.16, intron 1 of 23) protein_coding-intron (ENSMUSG00000049807.16, intron 1 of 23) -20189 ENSMUSG00000049807.16 ENSMUSG00000049807 ENSMUST00000093940 Arhgap23 protein_coding Interval_55567 chr14 92764351 92765120 + 0 NA Intergenic Intergenic 90637 ENSMUSG00000115660.1 ENSMUSG00000115660 ENSMUST00000226950 Gm48962 processed_pseudogene Interval_122373 chr5 21784275 21785341 + 0 NA promoter-TSS (ENSMUSG00000028932.8) protein_coding-promoter-TSS (ENSMUSG00000028932.8) 346 ENSMUSG00000029014.14 ENSMUSG00000029014 ENSMUST00000115192 Dnajc2 protein_coding Interval_15022 chr10 41991531 41991742 + 0 NA intron (ENSMUSG00000071324.11, intron 1 of 1) protein_coding-intron (ENSMUSG00000071324.11, intron 5 of 17) -26580 ENSMUSG00000111103.1 ENSMUSG00000111103 ENSMUST00000214172 1700016J18Rik bidirectional_promoter_lncRNA Interval_4016 chr1 66550408 66550597 + 0 NA intron (ENSMUSG00000055567.18, intron 19 of 63) protein_coding-intron (ENSMUSG00000055567.18, intron 19 of 64) 82055 ENSMUSG00000055567.18 ENSMUSG00000055567 ENSMUST00000152844 Unc80 protein_coding Interval_153259 chr7 142988719 142990256 + 0 NA intron (ENSMUSG00000052281.14, intron 2 of 2) antisense-intron (ENSMUSG00000052281.14, intron 4 of 4) 1291 ENSMUSG00000052281.14 ENSMUSG00000052281 ENSMUST00000131740 Tspan32os antisense Interval_125005 chr5 63755325 63755758 + 0 NA intron (ENSMUSG00000090061.9, intron 4 of 6) protein_coding-intron (ENSMUSG00000090061.9, intron 3 of 6) -44921 ENSMUSG00000090061.9 ENSMUSG00000090061 ENSMUST00000162757 Nwd2 protein_coding Interval_52305 chr14 44387353 44387879 + 0 NA Intergenic Intergenic 7746 ENSMUSG00000092144.1 ENSMUSG00000092144 ENSMUST00000171785 Gm3370 unprocessed_pseudogene Interval_58918 chr15 40013739 40013972 + 0 NA exon (ENSMUSG00000115739.1, exon 1 of 1) TEC-exon (ENSMUSG00000115739.1, exon 1 of 1) 923 ENSMUSG00000115739.1 ENSMUSG00000115739 ENSMUST00000228464 Gm49254 TEC Interval_148473 chr7 81541459 81542287 + 0 NA intron (ENSMUSG00000038663.7, intron 10 of 12) protein_coding-intron (ENSMUSG00000038663.7, intron 10 of 12) -9352 ENSMUSG00000104453.1 ENSMUSG00000104453 ENSMUST00000193864 Gm37829 TEC Interval_10545 chr1 171679424 171680329 + 0 NA promoter-TSS (ENSMUSG00000103137.1) processed_pseudogene-promoter-TSS (ENSMUSG00000103137.1) -6 ENSMUSG00000103137.1 ENSMUSG00000103137 ENSMUST00000194280 Gm37981 processed_pseudogene Interval_143745 chr7 16024733 16025031 + 0 NA intron (ENSMUSG00000070808.4, intron 1 of 14) protein_coding-intron (ENSMUSG00000070808.4, intron 1 of 14) 23039 ENSMUSG00000070808.4 ENSMUSG00000070808 ENSMUST00000209251 Bicra protein_coding Interval_87244 chr19 47157570 47158776 + 0 NA promoter-TSS (ENSMUSG00000094219.1) protein_coding-promoter-TSS (ENSMUSG00000094219.1) -409 ENSMUSG00000094219.1 ENSMUSG00000094219 ENSMUST00000178630 Calhm3 protein_coding Interval_132475 chr5 145180764 145181862 + 0 NA TTS (ENSMUSG00000029625.16) protein_coding-TTS (ENSMUSG00000029625.16) 10215 ENSMUSG00000038690.15 ENSMUSG00000038690 ENSMUST00000200584 Atp5j2 protein_coding Interval_169107 chr9 92548714 92548953 + 0 NA intron (ENSMUSG00000032374.14, intron 1 of 19) protein_coding-intron (ENSMUSG00000032374.14, intron 1 of 18) -5964 ENSMUSG00000103622.1 ENSMUSG00000103622 ENSMUST00000191720 Gm38391 TEC Interval_62870 chr15 97603312 97603708 + 0 NA Intergenic Intergenic -45220 ENSMUSG00000116131.1 ENSMUSG00000116131 ENSMUST00000230522 Gm49506 processed_pseudogene Interval_123499 chr5 32989464 32991275 + 0 NA intron (ENSMUSG00000037426.18, intron 19 of 20) protein_coding-intron (ENSMUSG00000037426.18, intron 41 of 42) 5799 ENSMUSG00000105929.1 ENSMUSG00000105929 ENSMUST00000196072 Gm43693 TEC Interval_147888 chr7 75117532 75118548 + 0 NA intron (ENSMUSG00000053025.13, intron 12 of 12) protein_coding-intron (ENSMUSG00000053025.13, intron 12 of 12) 29686 ENSMUSG00000053025.13 ENSMUSG00000053025 ENSMUST00000206236 Sv2b protein_coding Interval_49565 chr13 112993345 112994550 + 0 NA exon (ENSMUSG00000074651.3, exon 1 of 7) protein_coding-exon (ENSMUSG00000074651.3, exon 1 of 7) 102 ENSMUSG00000074651.3 ENSMUSG00000074651 ENSMUST00000092089 Mcidas protein_coding Interval_26863 chr11 61174341 61175590 + 0 NA promoter-TSS (ENSMUSG00000042506.15) protein_coding-promoter-TSS (ENSMUSG00000042506.15) -6690 ENSMUSG00000042506.15 ENSMUSG00000042506 ENSMUST00000174220 Usp22 protein_coding Interval_23467 chr11 22791690 22792559 + 0 NA intron (ENSMUSG00000051650.11, intron 3 of 5) protein_coding-intron (ENSMUSG00000051650.11, intron 3 of 5) -4877 ENSMUSG00000082576.1 ENSMUSG00000082576 ENSMUST00000118614 Gm12058 processed_pseudogene Interval_41248 chr12 112130029 112131295 + 0 NA promoter-TSS (ENSMUSG00000065574.1) miRNA-promoter-TSS (ENSMUSG00000065574.1) -218 ENSMUSG00000065574.1 ENSMUSG00000065574 ENSMUST00000083640 Mir203 miRNA Interval_134565 chr6 29620012 29621498 + 0 NA Intergenic Intergenic -49236 ENSMUSG00000012535.14 ENSMUSG00000012535 ENSMUST00000166844 Tnpo3 protein_coding Interval_106577 chr3 97466237 97466468 + 0 NA Intergenic Intergenic -44332 ENSMUSG00000051392.5 ENSMUSG00000051392 ENSMUST00000060912 Olfr1402 protein_coding Interval_172397 chrX 17564041 17564481 + 0 NA intron (ENSMUSG00000025040.13, intron 2 of 3) protein_coding-intron (ENSMUSG00000025040.13, intron 3 of 4) 7380 ENSMUSG00000025040.13 ENSMUSG00000025040 ENSMUST00000142638 Fundc1 protein_coding Interval_18260 chr10 84392132 84392670 + 0 NA promoter-TSS (ENSMUSG00000020032.14) protein_coding-promoter-TSS (ENSMUSG00000020032.14) -13 ENSMUSG00000020032.14 ENSMUSG00000020032 ENSMUST00000129355 Nuak1 protein_coding Interval_69403 chr16 92828136 92828694 + 0 NA Intergenic Intergenic -2341 ENSMUSG00000022952.17 ENSMUSG00000022952 ENSMUST00000189679 Runx1 protein_coding Interval_14341 chr10 31054648 31054895 + 0 NA intron (ENSMUSG00000111778.1, intron 1 of 4) lincRNA-intron (ENSMUSG00000111778.1, intron 1 of 4) 11471 ENSMUSG00000111778.1 ENSMUSG00000111778 ENSMUST00000217645 Gm30676 lincRNA Interval_82619 chr18 75470590 75472292 + 0 NA intron (ENSMUSG00000052928.9, intron 10 of 11) protein_coding-intron (ENSMUSG00000052928.9, intron 10 of 11) -43204 ENSMUSG00000097712.1 ENSMUSG00000097712 ENSMUST00000181913 Gm10532 antisense Interval_9096 chr1 153563664 153563905 + 0 NA Intergenic Intergenic -14073 ENSMUSG00000042684.8 ENSMUSG00000042684 ENSMUST00000187747 Npl protein_coding Interval_25310 chr11 46244975 46245188 + 0 NA promoter-TSS (ENSMUSG00000081078.1) processed_pseudogene-promoter-TSS (ENSMUSG00000081078.1) -887 ENSMUSG00000081078.1 ENSMUSG00000081078 ENSMUST00000117362 Gm12568 processed_pseudogene Interval_21814 chr11 4508344 4509337 + 0 NA intron (ENSMUSG00000034354.17, intron 6 of 17) protein_coding-intron (ENSMUSG00000034354.17, intron 6 of 17) -20474 ENSMUSG00000034354.17 ENSMUSG00000034354 ENSMUST00000144242 Mtmr3 protein_coding Interval_127517 chr5 104801189 104801629 + 0 NA Intergenic Intergenic 25630 ENSMUSG00000048334.8 ENSMUSG00000048334 ENSMUST00000055593 Gm8258 processed_pseudogene Interval_100805 chr2 172619036 172620418 + 0 NA Intergenic Intergenic 68736 ENSMUSG00000028640.11 ENSMUSG00000028640 ENSMUST00000142633 Tfap2c protein_coding Interval_153640 chr8 4213231 4214820 + 0 NA exon (ENSMUSG00000064125.14, exon 6 of 7) protein_coding-exon (ENSMUSG00000064125.14, exon 6 of 7) 2887 ENSMUSG00000064125.14 ENSMUSG00000064125 ENSMUST00000176227 Prr36 protein_coding Interval_157134 chr8 66092095 66092362 + 0 NA intron (ENSMUSG00000036469.16, intron 3 of 7) protein_coding-intron (ENSMUSG00000036469.16, intron 1 of 5) -29514 ENSMUSG00000036469.16 ENSMUSG00000036469 ENSMUST00000110253 Marchf1 protein_coding Interval_3977 chr1 65299732 65300071 + 0 NA intron (ENSMUSG00000025946.13, intron 1 of 5) protein_coding-intron (ENSMUSG00000025946.13, intron 1 of 5) 17845 ENSMUSG00000025946.13 ENSMUSG00000025946 ENSMUST00000027083 Pth2r protein_coding Interval_113784 chr4 58571544 58571992 + 0 NA Intergenic Intergenic -17996 ENSMUSG00000081186.1 ENSMUSG00000081186 ENSMUST00000121244 Gm12578 processed_pseudogene Interval_90903 chr2 33377466 33377920 + 0 NA Intergenic Intergenic -14647 ENSMUSG00000093138.1 ENSMUSG00000093138 ENSMUST00000175397 Gm25998 miRNA Interval_99539 chr2 163038486 163038787 + 0 NA intron (ENSMUSG00000017858.12, intron 10 of 12) protein_coding-intron (ENSMUSG00000017858.12, intron 10 of 12) 16193 ENSMUSG00000017858.12 ENSMUSG00000017858 ENSMUST00000152201 Ift52 protein_coding Interval_99636 chr2 163764113 163764300 + 0 NA Intergenic Intergenic -33340 ENSMUSG00000017697.3 ENSMUSG00000017697 ENSMUST00000156939 Ada protein_coding Interval_36814 chr12 54305971 54306998 + 0 NA Intergenic Intergenic 10531 ENSMUSG00000112705.1 ENSMUSG00000112705 ENSMUST00000217997 Gm47552 lincRNA Interval_164279 chr9 34981671 34982232 + 0 NA intron (ENSMUSG00000032036.15, intron 4 of 13) protein_coding-intron (ENSMUSG00000032036.15, intron 5 of 16) 21932 ENSMUSG00000089465.1 ENSMUSG00000089465 ENSMUST00000158840 Gm23702 rRNA Interval_48150 chr13 96692085 96692316 + 0 NA Intergenic Intergenic -14077 ENSMUSG00000113351.1 ENSMUSG00000113351 ENSMUST00000221591 Gm48575 processed_pseudogene Interval_66005 chr16 30873530 30874273 + 0 NA intron (ENSMUSG00000116737.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000116737.1, intron 1 of 2) 3710 ENSMUSG00000116737.1 ENSMUSG00000116737 ENSMUST00000231959 Gm49757 lincRNA Interval_132227 chr5 143463944 143465432 + 0 NA promoter-TSS (ENSMUSG00000039206.13) protein_coding-promoter-TSS (ENSMUSG00000039206.13) 7785 ENSMUSG00000106068.1 ENSMUSG00000106068 ENSMUST00000199908 Gm9497 processed_pseudogene Interval_46847 chr13 72365658 72365954 + 0 NA Intergenic Intergenic 5841 ENSMUSG00000113172.1 ENSMUSG00000113172 ENSMUST00000222760 Gm47836 TEC Interval_166042 chr9 56024938 56025230 + 0 NA Intergenic Intergenic -2658 ENSMUSG00000110989.1 ENSMUSG00000110989 ENSMUST00000217455 Gm7444 processed_pseudogene Interval_13207 chr10 13037445 13037856 + 0 NA Intergenic Intergenic 13735 ENSMUSG00000112498.1 ENSMUSG00000112498 ENSMUST00000219965 Gm47691 lincRNA Interval_99585 chr2 163368519 163369414 + 0 NA intron (ENSMUSG00000017817.11, intron 3 of 6) protein_coding-intron (ENSMUSG00000017817.11, intron 2 of 5) 29027 ENSMUSG00000017817.11 ENSMUSG00000017817 ENSMUST00000109425 Jph2 protein_coding Interval_126594 chr5 90588858 90589398 + 0 NA promoter-TSS (ENSMUSG00000106863.3) processed_transcript-promoter-TSS (ENSMUSG00000106863.3) -71 ENSMUSG00000106863.3 ENSMUSG00000106863 ENSMUST00000200783 Gm42109 processed_transcript Interval_87224 chr19 47023450 47024139 + 0 NA exon (ENSMUSG00000034336.3, exon 3 of 3) protein_coding-exon (ENSMUSG00000034336.3, exon 3 of 3) 9096 ENSMUSG00000034336.3 ENSMUSG00000034336 ENSMUST00000037636 Ina protein_coding Interval_7816 chr1 133887173 133887863 + 0 NA Intergenic Intergenic -19013 ENSMUSG00000090208.1 ENSMUSG00000090208 ENSMUST00000160564 Gm15851 antisense Interval_155400 chr8 33284973 33285326 + 0 NA exon (ENSMUSG00000031583.13, exon 21 of 34) protein_coding-exon (ENSMUSG00000031583.13, exon 21 of 34) 45401 ENSMUSG00000031583.13 ENSMUSG00000031583 ENSMUST00000209293 Wrn protein_coding Interval_61129 chr15 79416232 79417230 + 0 NA Intergenic Intergenic -10489 ENSMUSG00000085802.1 ENSMUSG00000085802 ENSMUST00000135583 Gm16059 antisense Interval_89671 chr2 24435481 24435798 + 0 NA intron (ENSMUSG00000026976.15, intron 7 of 9) protein_coding-intron (ENSMUSG00000026976.15, intron 9 of 11) -7210 ENSMUSG00000085057.7 ENSMUSG00000085057 ENSMUST00000187034 Gm13415 processed_transcript Interval_125687 chr5 73248143 73248507 + 0 NA intron (ENSMUSG00000070733.13, intron 1 of 11) protein_coding-intron (ENSMUSG00000070733.13, intron 1 of 62) -15104 ENSMUSG00000107087.1 ENSMUSG00000107087 ENSMUST00000201180 Gm34411 lincRNA Interval_20544 chr10 118762751 118764128 + 0 NA Intergenic Intergenic 41820 ENSMUSG00000112198.1 ENSMUSG00000112198 ENSMUST00000218715 Gm4065 lincRNA Interval_116153 chr4 108181432 108183194 + 0 NA intron (ENSMUSG00000034645.14, intron 13 of 13) protein_coding-intron (ENSMUSG00000034645.14, intron 13 of 13) 9650 ENSMUSG00000028601.18 ENSMUSG00000028601 ENSMUST00000106691 Echdc2 protein_coding Interval_44851 chr13 49094471 49094942 + 0 NA intron (ENSMUSG00000037989.15, intron 5 of 27) protein_coding-intron (ENSMUSG00000037989.15, intron 5 of 27) 53306 ENSMUSG00000037989.15 ENSMUSG00000037989 ENSMUST00000159633 Wnk2 protein_coding Interval_1727 chr1 32915960 32916198 + 0 NA Intergenic Intergenic 56411 ENSMUSG00000102926.1 ENSMUSG00000102926 ENSMUST00000194631 Gm37151 TEC Interval_116210 chr4 108700224 108701397 + 0 NA intron (ENSMUSG00000034557.14, intron 1 of 15) protein_coding-intron (ENSMUSG00000034557.14, intron 1 of 15) -18839 ENSMUSG00000094958.1 ENSMUSG00000094958 ENSMUST00000178992 3110021N24Rik protein_coding Interval_161990 chr8 124286667 124286887 + 0 NA intron (ENSMUSG00000089704.9, intron 1 of 4) protein_coding-intron (ENSMUSG00000089704.9, intron 1 of 15) -8589 ENSMUSG00000089704.9 ENSMUSG00000089704 ENSMUST00000147911 Galnt2 protein_coding Interval_106950 chr3 102146049 102147334 + 0 NA TTS (ENSMUSG00000027861.13) protein_coding-TTS (ENSMUSG00000027861.13) 12076 ENSMUSG00000106296.1 ENSMUSG00000106296 ENSMUST00000197326 4632404M16Rik sense_intronic Interval_96532 chr2 125422307 125422497 + 0 NA intron (ENSMUSG00000027204.13, intron 5 of 9) protein_coding-intron (ENSMUSG00000027204.13, intron 6 of 65) -82687 ENSMUSG00000053615.1 ENSMUSG00000053615 ENSMUST00000066157 Gm9913 antisense Interval_157416 chr8 70224986 70225461 + 0 NA promoter-TSS (ENSMUSG00000002343.11) protein_coding-promoter-TSS (ENSMUSG00000002343.11) -46 ENSMUSG00000002343.11 ENSMUSG00000002343 ENSMUST00000130319 Armc6 protein_coding Interval_102180 chr3 19233553 19235340 + 0 NA promoter-TSS (ENSMUSG00000069094.12) protein_coding-promoter-TSS (ENSMUSG00000069094.12) 6666 ENSMUSG00000087108.1 ENSMUSG00000087108 ENSMUST00000141455 Gm16093 antisense Interval_79295 chr18 30207794 30208001 + 0 NA Intergenic Intergenic -59352 ENSMUSG00000117465.1 ENSMUSG00000117465 ENSMUST00000234467 Gm49980 lincRNA Interval_119761 chr4 139767278 139768736 + 0 NA intron (ENSMUSG00000028736.13, intron 7 of 8) protein_coding-intron (ENSMUSG00000028736.13, intron 7 of 8) 65000 ENSMUSG00000028736.13 ENSMUSG00000028736 ENSMUST00000174681 Pax7 protein_coding Interval_61305 chr15 80721816 80723011 + 0 NA intron (ENSMUSG00000047888.10, intron 1 of 24) protein_coding-intron (ENSMUSG00000047888.10, intron 1 of 24) 10142 ENSMUSG00000116480.1 ENSMUSG00000116480 ENSMUST00000230620 Gm49512 sense_intronic Interval_42877 chr13 20939000 20939533 + 0 NA intron (ENSMUSG00000021322.8, intron 11 of 20) protein_coding-intron (ENSMUSG00000021322.8, intron 11 of 20) 94512 ENSMUSG00000088989.1 ENSMUSG00000088989 ENSMUST00000158364 Gm25605 snRNA Interval_47738 chr13 92101669 92101909 + 0 NA intron (ENSMUSG00000021708.17, intron 1 of 9) protein_coding-intron (ENSMUSG00000021708.17, intron 1 of 33) 29867 ENSMUSG00000021708.17 ENSMUSG00000021708 ENSMUST00000146492 Rasgrf2 protein_coding Interval_157121 chr8 65574105 65574893 + 0 NA Intergenic Intergenic 93202 ENSMUSG00000064763.1 ENSMUSG00000064763 ENSMUST00000082829 Gm23515 snRNA Interval_27463 chr11 68003886 68004959 + 0 NA intron (ENSMUSG00000020903.13, intron 4 of 7) protein_coding-intron (ENSMUSG00000020903.13, intron 4 of 7) 31288 ENSMUSG00000082266.1 ENSMUSG00000082266 ENSMUST00000119506 Gm12303 processed_pseudogene Interval_154971 chr8 25370865 25371896 + 0 NA Intergenic Intergenic -27640 ENSMUSG00000110172.1 ENSMUSG00000110172 ENSMUST00000211376 Gm39147 transcribed_processed_pseudogene Interval_86466 chr19 40780305 40780494 + 0 NA intron (ENSMUSG00000108929.2, intron 14 of 25) protein_coding-intron (ENSMUSG00000108929.2, intron 14 of 25) 31646 ENSMUSG00000108929.2 ENSMUSG00000108929 ENSMUST00000207791 Cc2d2b protein_coding Interval_78615 chr18 15267181 15268050 + 0 NA Intergenic Intergenic 45084 ENSMUSG00000117380.1 ENSMUSG00000117380 ENSMUST00000234159 E430002N23Rik lincRNA Interval_92570 chr2 60766705 60766967 + 0 NA intron (ENSMUSG00000026970.16, intron 6 of 14) protein_coding-intron (ENSMUSG00000026970.16, intron 6 of 13) -93110 ENSMUSG00000026971.15 ENSMUSG00000026971 ENSMUST00000142696 Itgb6 protein_coding Interval_26150 chr11 54762524 54762731 + 0 NA intron (ENSMUSG00000052298.12, intron 1 of 4) protein_coding-intron (ENSMUSG00000052298.12, intron 1 of 5) -15803 ENSMUSG00000082503.1 ENSMUSG00000082503 ENSMUST00000120487 Gm12229 processed_pseudogene Interval_4930 chr1 82754026 82754238 + 0 NA Intergenic Intergenic 12154 ENSMUSG00000026150.14 ENSMUSG00000026150 ENSMUST00000162573 Mff protein_coding Interval_60653 chr15 75940480 75941793 + 0 NA exon (ENSMUSG00000050846.9, exon 1 of 2) protein_coding-exon (ENSMUSG00000050846.9, exon 1 of 2) 184 ENSMUSG00000050846.9 ENSMUSG00000050846 ENSMUST00000037260 Zfp623 protein_coding Interval_150565 chr7 112471056 112471375 + 0 NA intron (ENSMUSG00000030770.15, intron 2 of 13) protein_coding-intron (ENSMUSG00000030770.15, intron 1 of 12) 43310 ENSMUSG00000030770.15 ENSMUSG00000030770 ENSMUST00000126047 Parva protein_coding Interval_166127 chr9 56889838 56890525 + 0 NA exon (ENSMUSG00000032911.6, exon 4 of 10) protein_coding-exon (ENSMUSG00000032911.6, exon 4 of 10) -6142 ENSMUSG00000032911.6 ENSMUSG00000032911 ENSMUST00000217052 Cspg4 protein_coding Interval_3802 chr1 63168196 63169705 + 0 NA TTS (ENSMUSG00000025968.16) protein_coding-TTS (ENSMUSG00000025968.16) 7095 ENSMUSG00000077884.2 ENSMUSG00000077884 ENSMUST00000104692 Gm24557 miRNA Interval_153871 chr8 10361663 10361864 + 0 NA intron (ENSMUSG00000039057.11, intron 5 of 5) protein_coding-intron (ENSMUSG00000039057.11, intron 4 of 34) 112475 ENSMUSG00000039057.11 ENSMUSG00000039057 ENSMUST00000042103 Myo16 protein_coding Interval_13395 chr10 17755182 17755529 + 0 NA Intergenic Intergenic 32122 ENSMUSG00000039910.10 ENSMUSG00000039910 ENSMUST00000218370 Cited2 protein_coding Interval_74074 chr17 46433582 46434324 + 0 NA exon (ENSMUSG00000067144.7, exon 7 of 10) protein_coding-exon (ENSMUSG00000067144.7, exon 7 of 10) 3278 ENSMUSG00000023968.15 ENSMUSG00000023968 ENSMUST00000165750 Crip3 protein_coding Interval_120183 chr4 143618027 143618268 + 0 NA exon (ENSMUSG00000066688.4, exon 3 of 3) protein_coding-exon (ENSMUSG00000066688.4, exon 3 of 3) 3144 ENSMUSG00000066688.4 ENSMUSG00000066688 ENSMUST00000105773 Gm13083 protein_coding Interval_114518 chr4 82040878 82041356 + 0 NA intron (ENSMUSG00000087110.1, intron 4 of 5) lincRNA-intron (ENSMUSG00000087110.1, intron 4 of 5) 20104 ENSMUSG00000092661.1 ENSMUSG00000092661 ENSMUST00000174920 Gm22402 miRNA Interval_136575 chr6 55880731 55881128 + 0 NA intron (ENSMUSG00000037973.6, intron 4 of 13) protein_coding-intron (ENSMUSG00000037973.6, intron 4 of 13) -5896 ENSMUSG00000037973.6 ENSMUSG00000037973 ENSMUST00000169699 Itprid1 protein_coding Interval_127102 chr5 100316922 100318328 + 0 NA intron (ENSMUSG00000085915.1, intron 1 of 4) unprocessed_pseudogene-intron (ENSMUSG00000085915.1, intron 1 of 4) 37494 ENSMUSG00000085915.1 ENSMUSG00000085915 ENSMUST00000150506 Gm8091 unprocessed_pseudogene Interval_41785 chr12 119130518 119130918 + 0 NA Intergenic Intergenic -63288 ENSMUSG00000114030.1 ENSMUSG00000114030 ENSMUST00000221798 Gm18921 processed_pseudogene Interval_139325 chr6 98923947 98924184 + 0 NA Intergenic Intergenic -63250 ENSMUSG00000107514.1 ENSMUSG00000107514 ENSMUST00000203192 Gm32381 processed_pseudogene Interval_70310 chr17 8401518 8401964 + 0 NA intron (ENSMUSG00000058159.14, intron 6 of 9) protein_coding-intron (ENSMUSG00000058159.14, intron 5 of 10) -17081 ENSMUSG00000116704.1 ENSMUSG00000116704 ENSMUST00000231828 Gm5491 processed_pseudogene Interval_153310 chr7 143512509 143512759 + 0 NA TTS (ENSMUSG00000059119.9) protein_coding-TTS (ENSMUSG00000059119.9) -9484 ENSMUSG00000010760.5 ENSMUSG00000010760 ENSMUST00000207561 Phlda2 protein_coding Interval_18544 chr10 87419228 87419498 + 0 NA Intergenic Intergenic -55217 ENSMUSG00000096692.1 ENSMUSG00000096692 ENSMUST00000179147 Gm23191 snRNA Interval_4060 chr1 66992759 66993188 + 0 NA Intergenic Intergenic 29245 ENSMUSG00000026000.16 ENSMUSG00000026000 ENSMUST00000189210 Lancl1 protein_coding Interval_19456 chr10 99472526 99473445 + 0 NA intron (ENSMUSG00000112265.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000112265.1, intron 1 of 2) -12755 ENSMUSG00000112082.1 ENSMUSG00000112082 ENSMUST00000218838 Gm35035 lincRNA Interval_167209 chr9 66212763 66213122 + 0 NA intron (ENSMUSG00000032380.9, intron 2 of 9) protein_coding-intron (ENSMUSG00000032380.9, intron 2 of 11) 54716 ENSMUSG00000032380.9 ENSMUSG00000032380 ENSMUST00000129778 Dapk2 protein_coding Interval_116304 chr4 109504681 109505300 + 0 NA TTS (ENSMUSG00000060491.14) protein_coding-TTS (ENSMUSG00000060491.14) -20262 ENSMUSG00000028557.10 ENSMUSG00000028557 ENSMUST00000145980 Rnf11 protein_coding Interval_65107 chr16 19412801 19413219 + 0 NA intron (ENSMUSG00000050158.7, intron 1 of 1) protein_coding-intron (ENSMUSG00000050158.7, intron 1 of 1) 1852 ENSMUSG00000077172.1 ENSMUSG00000077172 ENSMUST00000103984 Gm25762 snoRNA Interval_32889 chr11 112826324 112826972 + 0 NA TTS (ENSMUSG00000020624.3) lincRNA-TTS (ENSMUSG00000020624.3) 1469 ENSMUSG00000020624.3 ENSMUSG00000020624 ENSMUST00000153429 4933434M16Rik lincRNA Interval_8647 chr1 146024024 146025027 + 0 NA Intergenic Intergenic -395911 ENSMUSG00000090323.2 ENSMUSG00000090323 ENSMUST00000163646 Gm5263 processed_pseudogene Interval_62726 chr15 96487272 96487560 + 0 NA Intergenic Intergenic -7161 ENSMUSG00000116253.1 ENSMUSG00000116253 ENSMUST00000229198 Gm41392 lincRNA Interval_154651 chr8 22358252 22358487 + 0 NA intron (ENSMUSG00000031481.8, intron 24 of 28) protein_coding-intron (ENSMUSG00000031481.8, intron 24 of 27) 40175 ENSMUSG00000031482.9 ENSMUSG00000031482 ENSMUST00000210020 Slc25a15 protein_coding Interval_44224 chr13 42412615 42413074 + 0 NA Intergenic Intergenic 59933 ENSMUSG00000113000.1 ENSMUSG00000113000 ENSMUST00000222369 Gm6049 processed_pseudogene Interval_27286 chr11 65305953 65306138 + 0 NA intron (ENSMUSG00000085162.7, intron 1 of 3) lincRNA-intron (ENSMUSG00000085162.7, intron 1 of 3) 59753 ENSMUSG00000085162.7 ENSMUSG00000085162 ENSMUST00000130362 Gm12295 lincRNA Interval_156897 chr8 61535010 61535900 + 0 NA intron (ENSMUSG00000058056.16, intron 13 of 21) protein_coding-intron (ENSMUSG00000058056.16, intron 12 of 19) -19555 ENSMUSG00000058056.16 ENSMUSG00000058056 ENSMUST00000123523 Palld protein_coding Interval_133710 chr6 9234958 9235182 + 0 NA intron (ENSMUSG00000046178.3, intron 2 of 2) protein_coding-intron (ENSMUSG00000046178.3, intron 1 of 1) 88304 ENSMUSG00000107851.1 ENSMUSG00000107851 ENSMUST00000203681 Gm35736 processed_pseudogene Interval_104261 chr3 62341655 62342386 + 0 NA intron (ENSMUSG00000036885.14, intron 2 of 4) protein_coding-intron (ENSMUSG00000036885.14, intron 2 of 13) -1488 ENSMUSG00000103502.1 ENSMUSG00000103502 ENSMUST00000192267 9330121J05Rik antisense Interval_171656 chr9 119981428 119982142 + 0 NA intron (ENSMUSG00000032515.8, intron 1 of 2) protein_coding-intron (ENSMUSG00000032515.8, intron 1 of 4) -1361 ENSMUSG00000111639.1 ENSMUSG00000111639 ENSMUST00000214403 1700019L13Rik antisense Interval_154641 chr8 22219031 22219782 + 0 NA TTS (ENSMUSG00000031479.9) protein_coding-TTS (ENSMUSG00000031479.9) 2413 ENSMUSG00000031479.9 ENSMUSG00000031479 ENSMUST00000153949 Vps36 protein_coding Interval_31371 chr11 100297784 100298590 + 0 NA Intergenic Intergenic 6516 ENSMUSG00000087265.1 ENSMUSG00000087265 ENSMUST00000153030 Gm12349 lincRNA Interval_146673 chr7 49332376 49332637 + 0 NA intron (ENSMUSG00000052512.17, intron 1 of 6) protein_coding-intron (ENSMUSG00000052512.17, intron 1 of 37) -10968 ENSMUSG00000052512.17 ENSMUSG00000052512 ENSMUST00000183715 Nav2 protein_coding Interval_301 chr1 3251576 3251955 + 0 NA promoter-TSS (ENSMUSG00000102851.1) processed_pseudogene-promoter-TSS (ENSMUSG00000102851.1) -992 ENSMUSG00000102851.1 ENSMUSG00000102851 ENSMUST00000192857 Gm18956 processed_pseudogene Interval_12952 chr10 8682368 8683144 + 0 NA Intergenic Intergenic -30485 ENSMUSG00000111215.1 ENSMUSG00000111215 ENSMUST00000213934 Gm48654 lincRNA Interval_66689 chr16 36154598 36154962 + 0 NA Intergenic Intergenic -2031 ENSMUSG00000059657.5 ENSMUSG00000059657 ENSMUST00000079184 Stfa2l1 protein_coding Interval_74321 chr17 48953332 48953795 + 0 NA intron (ENSMUSG00000040490.4, intron 1 of 2) protein_coding-intron (ENSMUSG00000040490.4, intron 1 of 2) 21184 ENSMUSG00000040490.4 ENSMUSG00000040490 ENSMUST00000046254 Lrfn2 protein_coding Interval_165134 chr9 44740785 44741742 + 0 NA TTS (ENSMUSG00000032096.16) protein_coding-TTS (ENSMUSG00000032096.16) -4316 ENSMUSG00000064658.1 ENSMUSG00000064658 ENSMUST00000082724 Gm24166 snoRNA Interval_88956 chr2 13500559 13500800 + 0 NA Intergenic Intergenic 43984 ENSMUSG00000026723.10 ENSMUSG00000026723 ENSMUST00000144957 Trdmt1 protein_coding Interval_54514 chr14 70380920 70381780 + 0 NA intron (ENSMUSG00000033644.5, intron 20 of 22) protein_coding-intron (ENSMUSG00000033644.5, intron 20 of 22) 21163 ENSMUSG00000058745.4 ENSMUSG00000058745 ENSMUST00000078149 Gm9174 processed_pseudogene Interval_121677 chr5 5099132 5099509 + 0 NA intron (ENSMUSG00000028926.15, intron 7 of 9) protein_coding-intron (ENSMUSG00000028926.15, intron 7 of 14) 40787 ENSMUSG00000106054.1 ENSMUSG00000106054 ENSMUST00000199289 Gm43623 processed_transcript Interval_6953 chr1 121327176 121328430 + 0 NA promoter-TSS (ENSMUSG00000003721.14) protein_coding-promoter-TSS (ENSMUSG00000003721.14) -84 ENSMUSG00000003721.14 ENSMUSG00000003721 ENSMUST00000161068 Insig2 protein_coding Interval_18952 chr10 93328517 93328742 + 0 NA Intergenic Intergenic -6764 ENSMUSG00000110647.2 ENSMUSG00000110647 ENSMUST00000212186 Gm17745 lincRNA Interval_22254 chr11 8237464 8237729 + 0 NA Intergenic Intergenic -123502 ENSMUSG00000082459.1 ENSMUSG00000082459 ENSMUST00000122321 Gm11988 processed_pseudogene Interval_95618 chr2 112869147 112869415 + 0 NA intron (ENSMUSG00000057378.15, intron 20 of 103) protein_coding-intron (ENSMUSG00000057378.15, intron 20 of 102) -212733 ENSMUSG00000057378.15 ENSMUSG00000057378 ENSMUST00000208135 Ryr3 protein_coding Interval_62 GL456212.1 118393 119593 + 0 NA NA NA NA NA Interval_75156 chr17 64099114 64100718 + 0 NA intron (ENSMUSG00000000127.15, intron 15 of 17) protein_coding-intron (ENSMUSG00000000127.15, intron 15 of 17) 221699 ENSMUSG00000080455.1 ENSMUSG00000080455 ENSMUST00000116805 Gm24194 miRNA Interval_40565 chr12 105769335 105769654 + 0 NA intron (ENSMUSG00000041323.6, intron 16 of 17) protein_coding-intron (ENSMUSG00000041323.6, intron 16 of 17) 50638 ENSMUSG00000041323.6 ENSMUSG00000041323 ENSMUST00000220702 Ak7 protein_coding Interval_22062 chr11 6078026 6078380 + 0 NA Intergenic Intergenic -94065 ENSMUSG00000057897.14 ENSMUSG00000057897 ENSMUST00000129098 Camk2b protein_coding Interval_60580 chr15 75371244 75372660 + 0 NA TTS (ENSMUSG00000102028.1) unprocessed_pseudogene-TTS (ENSMUSG00000102028.1) 5317 ENSMUSG00000102028.1 ENSMUSG00000102028 ENSMUST00000190107 Gm3142 unprocessed_pseudogene Interval_58834 chr15 38445167 38445728 + 0 NA intron (ENSMUSG00000115009.1, intron 3 of 4) lincRNA-intron (ENSMUSG00000115009.1, intron 3 of 4) 9687 ENSMUSG00000115009.1 ENSMUSG00000115009 ENSMUST00000228650 G930009F23Rik lincRNA Interval_137985 chr6 83939141 83939404 + 0 NA intron (ENSMUSG00000030016.14, intron 3 of 26) protein_coding-intron (ENSMUSG00000030016.14, intron 3 of 27) -8626 ENSMUSG00000030016.14 ENSMUSG00000030016 ENSMUST00000204823 Zfp638 protein_coding Interval_11394 chr1 181554641 181555142 + 0 NA Intergenic Intergenic -27062 ENSMUSG00000047369.17 ENSMUSG00000047369 ENSMUST00000195808 Dnah14 protein_coding Interval_124083 chr5 38173679 38174406 + 0 NA Intergenic Intergenic -14569 ENSMUSG00000029126.7 ENSMUSG00000029126 ENSMUST00000201134 Nsg1 protein_coding Interval_15084 chr10 42463884 42465457 + 0 NA intron (ENSMUSG00000038302.14, intron 1 of 13) protein_coding-intron (ENSMUSG00000038302.14, intron 1 of 12) 13610 ENSMUSG00000038302.14 ENSMUSG00000038302 ENSMUST00000149832 Afg1l protein_coding Interval_145561 chr7 35628537 35628903 + 0 NA TTS (ENSMUSG00000034867.16) protein_coding-TTS (ENSMUSG00000034867.16) 9241 ENSMUSG00000034867.16 ENSMUSG00000034867 ENSMUST00000206632 Ankrd27 protein_coding Interval_20886 chr10 121742513 121742733 + 0 NA intron (ENSMUSG00000053684.8, intron 1 of 2) protein_coding-intron (ENSMUSG00000053684.8, intron 1 of 2) -8257 ENSMUSG00000053684.8 ENSMUSG00000053684 ENSMUST00000138630 BC048403 protein_coding Interval_170812 chr9 110922660 110923299 + 0 NA Intergenic Intergenic -2424 ENSMUSG00000096245.1 ENSMUSG00000096245 ENSMUST00000179216 Gm24269 miRNA Interval_135551 chr6 40349569 40351513 + 0 NA exon (ENSMUSG00000029916.11, exon 1 of 1) protein_coding-exon (ENSMUSG00000029916.11, exon 1 of 1) 25033 ENSMUSG00000029916.11 ENSMUSG00000029916 ENSMUST00000201751 Agk protein_coding Interval_161006 chr8 116865894 116866568 + 0 NA Intergenic Intergenic 28293 ENSMUSG00000014633.15 ENSMUSG00000014633 ENSMUST00000128304 Cmc2 protein_coding Interval_129930 chr5 123120161 123121411 + 0 NA intron (ENSMUSG00000029449.11, intron 2 of 5) protein_coding-intron (ENSMUSG00000029449.11, intron 2 of 4) 10090 ENSMUSG00000104951.1 ENSMUSG00000104951 ENSMUST00000200411 Gm43413 TEC Interval_125461 chr5 67340765 67341147 + 0 NA intron (ENSMUSG00000029221.15, intron 7 of 14) protein_coding-intron (ENSMUSG00000029221.15, intron 9 of 16) -24549 ENSMUSG00000107266.1 ENSMUSG00000107266 ENSMUST00000202864 Gm43698 lincRNA Interval_13426 chr10 18127238 18127428 + 0 NA Intergenic Intergenic 19946 ENSMUSG00000071392.6 ENSMUSG00000071392 ENSMUST00000207148 Ect2l protein_coding Interval_107549 chr3 108425888 108426465 + 0 NA TTS (ENSMUSG00000068739.13) protein_coding-TTS (ENSMUSG00000068739.13) -15154 ENSMUSG00000089188.1 ENSMUSG00000089188 ENSMUST00000158563 Gm22942 snoRNA Interval_86882 chr19 44603922 44604354 + 0 NA Intergenic Intergenic -10624 ENSMUSG00000117911.1 ENSMUSG00000117911 ENSMUST00000236677 Gm35460 lincRNA Interval_100084 chr2 166972853 166973275 + 0 NA intron (ENSMUSG00000039536.16, intron 1 of 11) protein_coding-intron (ENSMUSG00000039536.16, intron 1 of 11) -8348 ENSMUSG00000039536.16 ENSMUSG00000039536 ENSMUST00000130104 Stau1 protein_coding Interval_81494 chr18 61147624 61147867 + 0 NA intron (ENSMUSG00000024622.8, intron 11 of 17) protein_coding-intron (ENSMUSG00000024622.8, intron 12 of 20) -9132 ENSMUSG00000089125.1 ENSMUSG00000089125 ENSMUST00000158500 Gm26403 snRNA Interval_49389 chr13 111622662 111623473 + 0 NA intron (ENSMUSG00000086649.1, intron 1 of 1) processed_transcript-intron (ENSMUSG00000086649.1, intron 1 of 1) -29456 ENSMUSG00000096842.1 ENSMUSG00000096842 ENSMUST00000179668 Gm10736 processed_pseudogene Interval_85884 chr19 32711691 32712915 + 0 NA promoter-TSS (ENSMUSG00000013662.6) protein_coding-promoter-TSS (ENSMUSG00000013662.6) -17433 ENSMUSG00000013662.6 ENSMUSG00000013662 ENSMUST00000237933 Atad1 protein_coding Interval_46048 chr13 60577244 60577689 + 0 NA Intergenic Intergenic -24481 ENSMUSG00000021559.14 ENSMUSG00000021559 ENSMUST00000225952 Dapk1 protein_coding Interval_129110 chr5 117457753 117458561 + 0 NA intron (ENSMUSG00000061578.8, intron 1 of 20) protein_coding-intron (ENSMUSG00000061578.8, intron 1 of 3) 44157 ENSMUSG00000061578.8 ENSMUSG00000061578 ENSMUST00000180430 Ksr2 protein_coding Interval_150553 chr7 112368912 112369298 + 0 NA intron (ENSMUSG00000038244.14, intron 4 of 12) protein_coding-intron (ENSMUSG00000038244.14, intron 1 of 9) 19711 ENSMUSG00000038244.14 ENSMUSG00000038244 ENSMUST00000140202 Mical2 protein_coding Interval_112767 chr4 44780202 44780474 + 0 NA intron (ENSMUSG00000035649.17, intron 3 of 6) protein_coding-intron (ENSMUSG00000035649.17, intron 2 of 5) 24461 ENSMUSG00000035649.17 ENSMUSG00000035649 ENSMUST00000126968 Zcchc7 protein_coding Interval_28532 chr11 76546239 76547726 + 0 NA intron (ENSMUSG00000017631.19, intron 1 of 22) protein_coding-intron (ENSMUSG00000017631.19, intron 1 of 22) 32913 ENSMUSG00000080763.2 ENSMUSG00000080763 ENSMUST00000119724 Gm12341 processed_pseudogene Interval_98886 chr2 155792449 155793863 + 0 NA intron (ENSMUSG00000027612.7, intron 2 of 8) protein_coding-intron (ENSMUSG00000027612.7, intron 2 of 8) -13868 ENSMUSG00000027612.7 ENSMUSG00000027612 ENSMUST00000135945 Mmp24 protein_coding Interval_5696 chr1 91015255 91015483 + 0 NA intron (ENSMUSG00000026305.15, intron 1 of 12) protein_coding-intron (ENSMUSG00000026305.15, intron 1 of 12) -38217 ENSMUSG00000026305.15 ENSMUSG00000026305 ENSMUST00000187532 Lrrfip1 protein_coding Interval_54920 chr14 76244081 76245295 + 0 NA Intergenic Intergenic -6769 ENSMUSG00000115625.1 ENSMUSG00000115625 ENSMUST00000227933 2900040C04Rik lincRNA Interval_90223 chr2 29109851 29110269 + 0 NA Intergenic Intergenic -15826 ENSMUSG00000043535.13 ENSMUSG00000043535 ENSMUST00000145422 Setx protein_coding Interval_139479 chr6 100436706 100437137 + 0 NA Intergenic Intergenic 57893 ENSMUSG00000087929.1 ENSMUSG00000087929 ENSMUST00000157304 Gm23234 snoRNA Interval_76742 chr17 83778418 83780024 + 0 NA intron (ENSMUSG00000055817.18, intron 8 of 16) protein_coding-intron (ENSMUSG00000055817.18, intron 9 of 16) 50057 ENSMUSG00000055817.18 ENSMUSG00000055817 ENSMUST00000175920 Mta3 protein_coding Interval_123555 chr5 33475115 33475370 + 0 NA Intergenic Intergenic -37778 ENSMUSG00000107248.1 ENSMUSG00000107248 ENSMUST00000200726 Gm43851 lincRNA Interval_13812 chr10 22813381 22814159 + 0 NA Intergenic Intergenic -1979 ENSMUSG00000112397.1 ENSMUSG00000112397 ENSMUST00000220000 Gm10824 antisense Interval_95035 chr2 103372038 103373071 + 0 NA intron (ENSMUSG00000087278.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000087278.1, intron 1 of 2) 210 ENSMUSG00000087278.1 ENSMUSG00000087278 ENSMUST00000139065 A930006I01Rik lincRNA Interval_77061 chr17 86144481 86145805 + 0 NA promoter-TSS (ENSMUSG00000024135.10) protein_coding-promoter-TSS (ENSMUSG00000024135.10) -30432 ENSMUSG00000117546.1 ENSMUSG00000117546 ENSMUST00000234087 AC154542.1 TEC Interval_117379 chr4 123335288 123336434 + 0 NA intron (ENSMUSG00000032726.12, intron 1 of 6) protein_coding-intron (ENSMUSG00000032726.12, intron 1 of 6) 6942 ENSMUSG00000032726.12 ENSMUSG00000032726 ENSMUST00000040496 Bmp8a protein_coding Interval_47584 chr13 89548049 89548567 + 0 NA intron (ENSMUSG00000021613.9, intron 1 of 4) protein_coding-intron (ENSMUSG00000021613.9, intron 1 of 4) 30111 ENSMUSG00000094463.2 ENSMUSG00000094463 ENSMUST00000178288 Gm8546 processed_pseudogene Interval_87135 chr19 46377727 46378259 + 0 NA exon (ENSMUSG00000025228.5, exon 11 of 11) protein_coding-exon (ENSMUSG00000025228.5, exon 11 of 11) 17732 ENSMUSG00000025228.5 ENSMUSG00000025228 ENSMUST00000237952 Actr1a protein_coding Interval_109544 chr3 144330706 144331056 + 0 NA Intergenic Intergenic 10667 ENSMUSG00000106266.1 ENSMUSG00000106266 ENSMUST00000198471 Gm43447 lincRNA Interval_108509 chr3 127823919 127824885 + 0 NA exon (ENSMUSG00000074238.6, exon 1 of 2) protein_coding-intron (ENSMUSG00000074238.6, intron 2 of 4) 8569 ENSMUSG00000105804.1 ENSMUSG00000105804 ENSMUST00000200664 Gm43654 TEC Interval_39598 chr12 91343889 91344329 + 0 NA intron (ENSMUSG00000061533.16, intron 7 of 7) protein_coding-intron (ENSMUSG00000061533.16, intron 7 of 13) 20440 ENSMUSG00000113239.1 ENSMUSG00000113239 ENSMUST00000222339 Gm18388 processed_pseudogene Interval_149731 chr7 100987997 100988525 + 0 NA Intergenic Intergenic -13612 ENSMUSG00000048779.5 ENSMUSG00000048779 ENSMUST00000208653 P2ry6 protein_coding Interval_39622 chr12 91624950 91625633 + 0 NA Intergenic Intergenic -7614 ENSMUSG00000113943.1 ENSMUSG00000113943 ENSMUST00000222304 Gm47804 lincRNA Interval_63120 chr15 99199835 99200471 + 0 NA intron (ENSMUSG00000051934.5, intron 9 of 9) protein_coding-intron (ENSMUSG00000051934.5, intron 9 of 12) -25216 ENSMUSG00000087991.1 ENSMUSG00000087991 ENSMUST00000157366 Gm25057 misc_RNA Interval_157925 chr8 76313297 76313544 + 0 NA intron (ENSMUSG00000110485.1, intron 1 of 9) lincRNA-intron (ENSMUSG00000110485.1, intron 1 of 9) 19448 ENSMUSG00000098215.1 ENSMUSG00000098215 ENSMUST00000182418 Gm7069 processed_pseudogene Interval_162974 chr9 13918980 13919171 + 0 NA intron (ENSMUSG00000111100.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000111100.1, intron 1 of 1) 1044 ENSMUSG00000111100.1 ENSMUSG00000111100 ENSMUST00000214890 Gm47535 lincRNA Interval_173381 chrX 86016349 86017410 + 0 NA Intergenic Intergenic 16290 ENSMUSG00000080266.2 ENSMUSG00000080266 ENSMUST00000116562 Gm14772 processed_pseudogene Interval_166621 chr9 61346915 61347549 + 0 NA Intergenic Intergenic 24395 ENSMUSG00000074256.3 ENSMUSG00000074256 ENSMUST00000187131 Gm10655 lincRNA Interval_66221 chr16 32395759 32396211 + 0 NA Intergenic Intergenic -4521 ENSMUSG00000079625.2 ENSMUSG00000079625 ENSMUST00000115149 Tm4sf19 protein_coding Interval_170796 chr9 110839108 110839284 + 0 NA exon (ENSMUSG00000047257.13, exon 4 of 6) protein_coding-exon (ENSMUSG00000047257.13, exon 4 of 6) 4608 ENSMUSG00000047257.13 ENSMUSG00000047257 ENSMUST00000146794 Prss45 protein_coding Interval_61072 chr15 79071598 79071902 + 0 NA Intergenic Intergenic 7089 ENSMUSG00000115887.1 ENSMUSG00000115887 ENSMUST00000229249 Gm49471 TEC Interval_52195 chr14 40128635 40128893 + 0 NA Intergenic Intergenic 86477 ENSMUSG00000077019.1 ENSMUSG00000077019 ENSMUST00000103831 Gm22191 miRNA Interval_80744 chr18 46749003 46749252 + 0 NA intron (ENSMUSG00000024480.9, intron 1 of 7) protein_coding-intron (ENSMUSG00000024480.9, intron 1 of 5) -7570 ENSMUSG00000032905.5 ENSMUSG00000032905 ENSMUST00000234830 Atg12 protein_coding Interval_46207 chr13 62509171 62509405 + 0 NA intron (ENSMUSG00000074865.11, intron 1 of 5) protein_coding-intron (ENSMUSG00000055228.8, intron 1 of 2) 19672 ENSMUSG00000113428.1 ENSMUSG00000113428 ENSMUST00000221988 Gm7664 processed_pseudogene Interval_36408 chr12 43928300 43929507 + 0 NA Intergenic Intergenic 32194 ENSMUSG00000111960.1 ENSMUSG00000111960 ENSMUST00000219678 Gm46349 lincRNA Interval_155551 chr8 34300464 34300947 + 0 NA Intergenic Intergenic -4729 ENSMUSG00000080434.1 ENSMUSG00000080434 ENSMUST00000116784 Gm23177 miRNA Interval_164818 chr9 42180418 42180694 + 0 NA intron (ENSMUSG00000111767.1, intron 4 of 4) lincRNA-intron (ENSMUSG00000111767.1, intron 4 of 4) 28657 ENSMUSG00000111767.1 ENSMUSG00000111767 ENSMUST00000216643 4930546K05Rik lincRNA Interval_92115 chr2 53396060 53396540 + 0 NA Intergenic Intergenic 2187 ENSMUSG00000082472.1 ENSMUSG00000082472 ENSMUST00000118477 Gm13501 processed_pseudogene Interval_97874 chr2 144662925 144663274 + 0 NA intron (ENSMUSG00000027430.12, intron 3 of 4) protein_coding-intron (ENSMUSG00000027430.12, intron 4 of 5) -44866 ENSMUSG00000092833.1 ENSMUSG00000092833 ENSMUST00000175092 Gm24823 miRNA Interval_25879 chr11 52305425 52305688 + 0 NA Intergenic Intergenic 29501 ENSMUSG00000086395.1 ENSMUSG00000086395 ENSMUST00000150973 A630014C17Rik antisense Interval_8548 chr1 141474249 141474505 + 0 NA Intergenic Intergenic -51231 ENSMUSG00000104147.1 ENSMUSG00000104147 ENSMUST00000193718 Gm37142 TEC Interval_81226 chr18 56626041 56627208 + 0 NA Intergenic Intergenic -5527 ENSMUSG00000118153.1 ENSMUSG00000118153 ENSMUST00000236670 Gm50288 lincRNA Interval_101358 chr2 180755670 180756415 + 0 NA Intergenic Intergenic 19361 ENSMUSG00000087550.1 ENSMUSG00000087550 ENSMUST00000154524 Gm14343 processed_transcript Interval_94142 chr2 84653305 84653804 + 0 NA intron (ENSMUSG00000101645.1, intron 2 of 20) protein_coding-intron (ENSMUSG00000101645.1, intron 2 of 20) -5525 ENSMUSG00000086598.9 ENSMUSG00000086598 ENSMUST00000133437 Btbd18 protein_coding Interval_76850 chr17 84511309 84512868 + 0 NA intron (ENSMUSG00000040852.6, intron 1 of 9) protein_coding-intron (ENSMUSG00000040852.6, intron 1 of 29) 39155 ENSMUSG00000117391.1 ENSMUSG00000117391 ENSMUST00000234072 4930500A05Rik antisense Interval_2388 chr1 38887952 38888260 + 0 NA TTS (ENSMUSG00000103647.1) antisense-TTS (ENSMUSG00000103647.1) 3352 ENSMUSG00000103647.1 ENSMUSG00000103647 ENSMUST00000195309 Gm37707 antisense Interval_90131 chr2 28432727 28433557 + 0 NA Intergenic Intergenic -14799 ENSMUSG00000035829.13 ENSMUSG00000035829 ENSMUST00000040324 Ppp1r26 protein_coding Interval_54303 chr14 67413990 67414178 + 0 NA intron (ENSMUSG00000022053.13, intron 14 of 16) protein_coding-intron (ENSMUSG00000022053.13, intron 14 of 16) -16342 ENSMUSG00000093472.1 ENSMUSG00000093472 ENSMUST00000176841 4930438E09Rik antisense Interval_28380 chr11 75500599 75501102 + 0 NA exon (ENSMUSG00000020850.14, exon 27 of 42) protein_coding-exon (ENSMUSG00000020850.14, exon 27 of 42) 8604 ENSMUSG00000020850.14 ENSMUSG00000020850 ENSMUST00000133995 Prpf8 protein_coding Interval_147041 chr7 59228096 59229802 + 0 NA promoter-TSS (ENSMUSG00000025326.12) protein_coding-promoter-TSS (ENSMUSG00000025326.12) -487 ENSMUSG00000025326.12 ENSMUSG00000025326 ENSMUST00000202685 Ube3a protein_coding Interval_44186 chr13 41730005 41730317 + 0 NA Intergenic Intergenic -70622 ENSMUSG00000085759.1 ENSMUSG00000085759 ENSMUST00000154159 1700061E18Rik antisense Interval_115274 chr4 95133828 95135133 + 0 NA intron (ENSMUSG00000087366.7, intron 3 of 3) antisense-intron (ENSMUSG00000087366.7, intron 2 of 4) -17260 ENSMUSG00000100189.1 ENSMUSG00000100189 ENSMUST00000191391 Gm28096 sense_intronic Interval_33831 chr11 118826370 118826782 + 0 NA intron (ENSMUSG00000025576.17, intron 1 of 13) protein_coding-intron (ENSMUSG00000025576.17, intron 1 of 14) 26212 ENSMUSG00000077065.1 ENSMUSG00000077065 ENSMUST00000103877 Gm25040 miRNA Interval_59826 chr15 59595717 59595942 + 0 NA intron (ENSMUSG00000059586.10, intron 7 of 7) protein_coding-intron (ENSMUSG00000059586.10, intron 6 of 6) -22761 ENSMUSG00000115896.1 ENSMUSG00000115896 ENSMUST00000229684 Gm36677 lincRNA Interval_84499 chr19 11911735 11913250 + 0 NA promoter-TSS (ENSMUSG00000046139.8) protein_coding-promoter-TSS (ENSMUSG00000046139.8) 49 ENSMUSG00000046139.8 ENSMUSG00000046139 ENSMUST00000238190 Patl1 protein_coding Interval_115978 chr4 106749398 106750231 + 0 NA intron (ENSMUSG00000034853.16, intron 12 of 13) protein_coding-intron (ENSMUSG00000034853.16, intron 14 of 15) 15925 ENSMUSG00000034871.2 ENSMUSG00000034871 ENSMUST00000047620 Fam151a protein_coding Interval_9090 chr1 153525082 153525412 + 0 NA intron (ENSMUSG00000042684.8, intron 5 of 11) protein_coding-intron (ENSMUSG00000042684.8, intron 5 of 11) 24464 ENSMUSG00000042684.8 ENSMUSG00000042684 ENSMUST00000187747 Npl protein_coding Interval_124895 chr5 59827444 59827681 + 0 NA Intergenic Intergenic 49650 ENSMUSG00000104889.1 ENSMUSG00000104889 ENSMUST00000196579 Gm43043 processed_pseudogene Interval_25888 chr11 52346187 52347077 + 0 NA Intergenic Intergenic -27468 ENSMUSG00000020402.11 ENSMUSG00000020402 ENSMUST00000153339 Vdac1 protein_coding Interval_78201 chr18 10084784 10085053 + 0 NA exon (ENSMUSG00000024290.9, exon 1 of 1) protein_coding-exon (ENSMUSG00000024290.9, exon 1 of 1) 27460 ENSMUSG00000024290.9 ENSMUSG00000024290 ENSMUST00000235075 Rock1 protein_coding Interval_116954 chr4 118418059 118418375 + 0 NA Intergenic Intergenic 7869 ENSMUSG00000006392.16 ENSMUSG00000006392 ENSMUST00000135201 Med8 protein_coding Interval_30800 chr11 96561555 96563174 + 0 NA intron (ENSMUSG00000057058.16, intron 4 of 7) protein_coding-intron (ENSMUSG00000057058.16, intron 4 of 11) 78582 ENSMUSG00000057058.16 ENSMUSG00000057058 ENSMUST00000123814 Skap1 protein_coding Interval_128696 chr5 114772884 114775382 + 0 NA promoter-TSS (ENSMUSG00000041890.17) protein_coding-promoter-TSS (ENSMUSG00000041890.17) 850 ENSMUSG00000092183.1 ENSMUSG00000092183 ENSMUST00000173208 4930515G01Rik antisense Interval_121456 chr4 155943058 155944405 + 0 NA promoter-TSS (ENSMUSG00000023286.16) protein_coding-promoter-TSS (ENSMUSG00000023286.16) -100 ENSMUSG00000023286.16 ENSMUSG00000023286 ENSMUST00000124092 Ube2j2 protein_coding Interval_62380 chr15 91369737 91370418 + 0 NA intron (ENSMUSG00000036298.10, intron 4 of 9) protein_coding-intron (ENSMUSG00000036298.10, intron 4 of 9) 42140 ENSMUSG00000036298.10 ENSMUSG00000036298 ENSMUST00000109282 Slc2a13 protein_coding Interval_70639 chr17 12687658 12688655 + 0 NA intron (ENSMUSG00000023830.14, intron 44 of 47) protein_coding-intron (ENSMUSG00000023830.14, intron 44 of 47) -12460 ENSMUSG00000023829.9 ENSMUSG00000023829 ENSMUST00000233601 Slc22a1 protein_coding Interval_74560 chr17 53430654 53430865 + 0 NA intron (ENSMUSG00000023931.5, intron 3 of 8) protein_coding-intron (ENSMUSG00000023931.5, intron 6 of 12) 32547 ENSMUSG00000023931.5 ENSMUSG00000023931 ENSMUST00000233544 Efhb protein_coding Interval_49971 chr13 119122220 119123732 + 0 NA Intergenic Intergenic 146628 ENSMUSG00000105411.1 ENSMUSG00000105411 ENSMUST00000199467 Gm44488 miRNA Interval_138214 chr6 86364358 86366609 + 0 NA promoter-TSS (ENSMUSG00000057497.8) protein_coding-promoter-TSS (ENSMUSG00000057497.8) -241 ENSMUSG00000057497.8 ENSMUSG00000057497 ENSMUST00000204893 Fam136a protein_coding Interval_41395 chr12 113275699 113276736 + 0 NA Intergenic Intergenic -2969 ENSMUSG00000087642.3 ENSMUSG00000087642 ENSMUST00000137336 Ighe IG_C_gene Interval_26850 chr11 61070976 61072243 + 0 NA TTS (ENSMUSG00000042529.14) protein_coding-TTS (ENSMUSG00000042529.14) 5805 ENSMUSG00000042529.14 ENSMUSG00000042529 ENSMUST00000108717 Kcnj12 protein_coding Interval_154195 chr8 13332092 13333214 + 0 NA Intergenic Intergenic -6168 ENSMUSG00000038482.11 ENSMUSG00000038482 ENSMUST00000209945 Tfdp1 protein_coding Interval_137889 chr6 83155930 83156682 + 0 NA promoter-TSS (ENSMUSG00000030030.5) protein_coding-promoter-TSS (ENSMUSG00000030030.5) 59 ENSMUSG00000030032.12 ENSMUSG00000030032 ENSMUST00000146969 Wdr54 protein_coding Interval_9554 chr1 159358747 159359044 + 0 NA Intergenic Intergenic 18537 ENSMUSG00000105399.1 ENSMUSG00000105399 ENSMUST00000198115 Mir1843b miRNA Interval_56951 chr14 123993019 123993819 + 0 NA intron (ENSMUSG00000099994.1, intron 1 of 3) protein_coding-intron (ENSMUSG00000025551.13, intron 3 of 4) 5784 ENSMUSG00000099994.1 ENSMUSG00000099994 ENSMUST00000190088 1700024B18Rik antisense Interval_140008 chr6 113374453 113374876 + 0 NA exon (ENSMUSG00000048930.12, exon 3 of 3) protein_coding-exon (ENSMUSG00000048930.12, exon 3 of 3) 3092 ENSMUSG00000048930.12 ENSMUSG00000048930 ENSMUST00000193384 Tada3 protein_coding Interval_135853 chr6 47931189 47931445 + 0 NA exon (ENSMUSG00000052763.7, exon 5 of 5) protein_coding-exon (ENSMUSG00000052763.7, exon 5 of 5) 5011 ENSMUSG00000052763.7 ENSMUSG00000052763 ENSMUST00000156500 Zfp212 protein_coding Interval_111364 chr4 19708518 19709688 + 0 NA promoter-TSS (ENSMUSG00000041058.15) protein_coding-promoter-TSS (ENSMUSG00000041058.15) -110 ENSMUSG00000041058.15 ENSMUSG00000041058 ENSMUST00000035982 Wwp1 protein_coding Interval_90652 chr2 31698377 31698752 + 0 NA TTS (ENSMUSG00000026842.16) protein_coding-TTS (ENSMUSG00000026842.16) 9446 ENSMUSG00000118600.1 ENSMUSG00000118600 ENSMUST00000239231 AL929275.1 protein_coding Interval_162295 chr8 126848440 126848678 + 0 NA intron (ENSMUSG00000110697.1, intron 1 of 4) lincRNA-intron (ENSMUSG00000110697.1, intron 1 of 8) 9326 ENSMUSG00000110498.1 ENSMUSG00000110498 ENSMUST00000212914 A630001O12Rik lincRNA Interval_91398 chr2 38546116 38546966 + 0 NA intron (ENSMUSG00000026749.11, intron 2 of 3) protein_coding-intron (ENSMUSG00000026749.11, intron 1 of 9) -10834 ENSMUSG00000108210.1 ENSMUSG00000108210 ENSMUST00000204769 Gm35808 TEC Interval_151944 chr7 127691386 127692075 + 0 NA promoter-TSS (ENSMUSG00000108801.1) lincRNA-promoter-TSS (ENSMUSG00000108801.1) -205 ENSMUSG00000108801.1 ENSMUSG00000108801 ENSMUST00000205284 Gm39090 lincRNA Interval_50446 chr14 13355686 13356410 + 0 NA intron (ENSMUSG00000056296.17, intron 3 of 3) protein_coding-intron (ENSMUSG00000056296.17, intron 2 of 5) -1968 ENSMUSG00000081115.2 ENSMUSG00000081115 ENSMUST00000118492 Gm15913 processed_pseudogene Interval_19298 chr10 96299792 96300052 + 0 NA Intergenic Intergenic -9423 ENSMUSG00000112234.1 ENSMUSG00000112234 ENSMUST00000220354 Gm48427 lincRNA Interval_75268 chr17 65577265 65577473 + 0 NA TTS (ENSMUSG00000024091.9) protein_coding-TTS (ENSMUSG00000024091.9) -16593 ENSMUSG00000117158.1 ENSMUSG00000117158 ENSMUST00000233030 Gm49866 processed_pseudogene Interval_77975 chr18 6294519 6294760 + 0 NA Intergenic Intergenic -37993 ENSMUSG00000073640.3 ENSMUSG00000073640 ENSMUST00000097682 Rpl27-ps3 processed_pseudogene Interval_133386 chr6 4550367 4551419 + 0 NA Intergenic Intergenic 13404 ENSMUSG00000029661.16 ENSMUSG00000029661 ENSMUST00000203346 Col1a2 protein_coding Interval_85463 chr19 26735150 26735354 + 0 NA intron (ENSMUSG00000024921.17, intron 1 of 5) protein_coding-intron (ENSMUSG00000024921.17, intron 27 of 32) -13150 ENSMUSG00000024921.17 ENSMUSG00000024921 ENSMUST00000208984 Smarca2 protein_coding Interval_128949 chr5 116261545 116261789 + 0 NA intron (ENSMUSG00000043913.14, intron 1 of 5) protein_coding-intron (ENSMUSG00000043913.14, intron 1 of 13) 4006 ENSMUSG00000086055.1 ENSMUSG00000086055 ENSMUST00000126326 Gm13837 antisense Interval_5951 chr1 93461224 93461456 + 0 NA intron (ENSMUSG00000034088.15, intron 1 of 27) protein_coding-intron (ENSMUSG00000034088.15, intron 1 of 27) -15658 ENSMUSG00000034088.15 ENSMUSG00000034088 ENSMUST00000188844 Hdlbp protein_coding Interval_130337 chr5 125971197 125971529 + 0 NA intron (ENSMUSG00000105593.4, intron 2 of 2) lincRNA-intron (ENSMUSG00000105593.4, intron 2 of 2) 4190 ENSMUSG00000105593.4 ENSMUSG00000105593 ENSMUST00000196393 Gm42952 lincRNA Interval_16088 chr10 60652878 60653699 + 0 NA promoter-TSS (ENSMUSG00000012819.15) protein_coding-promoter-TSS (ENSMUSG00000012819.15) 99495 ENSMUSG00000020100.15 ENSMUSG00000020100 ENSMUST00000144989 Slc29a3 protein_coding Interval_57890 chr15 25018031 25018814 + 0 NA promoter-TSS (ENSMUSG00000097452.2) lincRNA-promoter-TSS (ENSMUSG00000097452.2) -28 ENSMUSG00000097452.2 ENSMUSG00000097452 ENSMUST00000226189 Gm2824 lincRNA Interval_90491 chr2 30778222 30779855 + 0 NA Intergenic Intergenic 24606 ENSMUSG00000044320.14 ENSMUSG00000044320 ENSMUST00000140168 1700001O22Rik protein_coding Interval_50016 chr13 119731646 119731991 + 0 NA intron (ENSMUSG00000095930.1, intron 1 of 3) protein_coding-intron (ENSMUSG00000095930.1, intron 1 of 3) 6576 ENSMUSG00000095930.1 ENSMUSG00000095930 ENSMUST00000178973 Nim1k protein_coding Interval_79095 chr18 24503576 24503797 + 0 NA intron (ENSMUSG00000040446.4, intron 5 of 5) protein_coding-intron (ENSMUSG00000040446.4, intron 6 of 6) 26408 ENSMUSG00000040446.4 ENSMUSG00000040446 ENSMUST00000234403 Rprd1a protein_coding Interval_151132 chr7 118746626 118746794 + 0 NA exon (ENSMUSG00000030982.19, exon 3 of 3) protein_coding-exon (ENSMUSG00000030982.19, exon 3 of 3) -5529 ENSMUSG00000108979.1 ENSMUSG00000108979 ENSMUST00000209027 1700016B15Rik TEC Interval_35996 chr12 33181446 33182086 + 0 NA intron (ENSMUSG00000020564.17, intron 2 of 12) protein_coding-intron (ENSMUSG00000020564.17, intron 1 of 2) -34170 ENSMUSG00000052125.16 ENSMUSG00000052125 ENSMUST00000172344 F730043M19Rik bidirectional_promoter_lncRNA Interval_167257 chr9 66795039 66796111 + 0 NA promoter-TSS (ENSMUSG00000032375.15) protein_coding-promoter-TSS (ENSMUSG00000032375.15) -139 ENSMUSG00000032375.15 ENSMUSG00000032375 ENSMUST00000113730 Aph1b protein_coding Interval_149917 chr7 102604446 102605664 + 0 NA exon (ENSMUSG00000073973.4, exon 1 of 1) protein_coding-exon (ENSMUSG00000073973.4, exon 1 of 1) 7285 ENSMUSG00000073973.4 ENSMUSG00000073973 ENSMUST00000098223 Olfr552 protein_coding Interval_162146 chr8 125507995 125508199 + 0 NA intron (ENSMUSG00000001995.9, intron 2 of 22) protein_coding-intron (ENSMUSG00000001995.9, intron 2 of 21) 61711 ENSMUSG00000001995.9 ENSMUSG00000001995 ENSMUST00000212604 Sipa1l2 protein_coding Interval_50827 chr14 20079900 20080275 + 0 NA intron (ENSMUSG00000045107.5, intron 1 of 1) protein_coding-intron (ENSMUSG00000045107.5, intron 1 of 1) -21790 ENSMUSG00000114498.1 ENSMUSG00000114498 ENSMUST00000224881 Gm48339 processed_pseudogene Interval_86450 chr19 40611769 40612846 + 0 NA promoter-TSS (ENSMUSG00000025008.15) protein_coding-promoter-TSS (ENSMUSG00000025008.15) -59 ENSMUSG00000048120.16 ENSMUSG00000048120 ENSMUST00000151726 Entpd1 protein_coding Interval_49092 chr13 107907805 107908352 + 0 NA Intergenic Intergenic -18014 ENSMUSG00000032846.10 ENSMUSG00000032846 ENSMUST00000224719 Zswim6 protein_coding Interval_75453 chr17 66665881 66666166 + 0 NA TTS (ENSMUSG00000033278.10) protein_coding-TTS (ENSMUSG00000033278.10) 16171 ENSMUSG00000117065.1 ENSMUSG00000117065 ENSMUST00000232933 Gm49941 processed_pseudogene Interval_141597 chr6 130557795 130558348 + 0 NA Intergenic Intergenic -9568 ENSMUSG00000098115.1 ENSMUSG00000098115 ENSMUST00000182280 Gm8816 processed_pseudogene Interval_44527 chr13 45731610 45732547 + 0 NA intron (ENSMUSG00000046876.16, intron 5 of 7) protein_coding-intron (ENSMUSG00000046876.16, intron 5 of 7) -17494 ENSMUSG00000114131.1 ENSMUSG00000114131 ENSMUST00000221126 Gm47460 antisense Interval_133387 chr6 4557495 4558244 + 0 NA Intergenic Intergenic 13847 ENSMUSG00000107828.1 ENSMUSG00000107828 ENSMUST00000203356 Gm18289 processed_pseudogene Interval_21852 chr11 4750221 4750647 + 0 NA Intergenic Intergenic -3656 ENSMUSG00000009075.2 ENSMUSG00000009075 ENSMUST00000009219 Cabp7 protein_coding Interval_78207 chr18 10114756 10114947 + 0 NA intron (ENSMUSG00000024290.9, intron 12 of 13) protein_coding-intron (ENSMUSG00000024290.9, intron 12 of 32) -2473 ENSMUSG00000024290.9 ENSMUSG00000024290 ENSMUST00000235075 Rock1 protein_coding Interval_149136 chr7 94519878 94520608 + 0 NA intron (ENSMUSG00000108532.1, intron 2 of 2) lincRNA-intron (ENSMUSG00000108532.1, intron 2 of 2) 44663 ENSMUSG00000108516.1 ENSMUSG00000108516 ENSMUST00000205948 Gm44602 processed_pseudogene Interval_97595 chr2 140226528 140227430 + 0 NA Intergenic Intergenic 55949 ENSMUSG00000027384.6 ENSMUSG00000027384 ENSMUST00000125913 Ndufaf5 protein_coding Interval_74464 chr17 51205518 51206042 + 0 NA Intergenic Intergenic -26486 ENSMUSG00000023923.10 ENSMUSG00000023923 ENSMUST00000225473 Tbc1d5 protein_coding Interval_11700 chr1 184771542 184772299 + 0 NA Intergenic Intergenic 34943 ENSMUSG00000102158.1 ENSMUSG00000102158 ENSMUST00000192139 Gm34342 lincRNA Interval_90914 chr2 33452158 33452565 + 0 NA exon (ENSMUSG00000026788.13, exon 3 of 3) protein_coding-exon (ENSMUSG00000026788.13, exon 3 of 3) 5559 ENSMUSG00000085742.1 ENSMUSG00000085742 ENSMUST00000132913 Gm13536 antisense Interval_110082 chr3 153122403 153122757 + 0 NA Intergenic Intergenic 60235 ENSMUSG00000105337.4 ENSMUSG00000105337 ENSMUST00000197695 1700094M23Rik lincRNA Interval_134756 chr6 31233277 31233901 + 0 NA intron (ENSMUSG00000087380.7, intron 1 of 4) processed_transcript-intron (ENSMUSG00000087380.7, intron 1 of 6) -17223 ENSMUSG00000044471.12 ENSMUSG00000044471 ENSMUST00000229779 Lncpint lincRNA Interval_26789 chr11 60496355 60496579 + 0 NA exon (ENSMUSG00000042678.17, exon 24 of 66) protein_coding-exon (ENSMUSG00000042678.17, exon 24 of 66) 16122 ENSMUSG00000042678.17 ENSMUSG00000042678 ENSMUST00000122825 Myo15 protein_coding Interval_90409 chr2 30264291 30267170 + 0 NA promoter-TSS (ENSMUSG00000079484.12) protein_coding-promoter-TSS (ENSMUSG00000079484.12) -13948 ENSMUSG00000079484.12 ENSMUSG00000079484 ENSMUST00000154988 Phyhd1 protein_coding Interval_112070 chr4 34282252 34282784 + 0 NA Intergenic Intergenic -71525 ENSMUSG00000062554.7 ENSMUSG00000062554 ENSMUST00000122336 Gm12751 processed_pseudogene Interval_79945 chr18 36130717 36131289 + 0 NA intron (ENSMUSG00000060275.14, intron 1 of 9) protein_coding-intron (ENSMUSG00000060275.14, intron 2 of 7) 25352 ENSMUSG00000117852.1 ENSMUSG00000117852 ENSMUST00000235667 4930471G03Rik antisense Interval_60561 chr15 74966140 74966365 + 0 NA Intergenic Intergenic 10569 ENSMUSG00000022587.14 ENSMUSG00000022587 ENSMUST00000188042 Ly6e protein_coding Interval_64029 chr16 5536933 5538047 + 0 NA Intergenic Intergenic -213333 ENSMUSG00000084573.1 ENSMUSG00000084573 ENSMUST00000122624 n-R5s30 rRNA Interval_85998 chr19 34839359 34839686 + 0 NA TTS (ENSMUSG00000033610.16) protein_coding-TTS (ENSMUSG00000033610.16) -18749 ENSMUSG00000065594.1 ENSMUSG00000065594 ENSMUST00000083660 Mir107 miRNA Interval_7095 chr1 125701276 125702144 + 0 NA intron (ENSMUSG00000026343.6, intron 1 of 1) protein_coding-intron (ENSMUSG00000026343.6, intron 1 of 1) -33094 ENSMUSG00000101015.1 ENSMUSG00000101015 ENSMUST00000191239 Gm18444 processed_pseudogene Interval_139107 chr6 95216146 95217997 + 0 NA Intergenic Intergenic 23507 ENSMUSG00000107934.1 ENSMUSG00000107934 ENSMUST00000204307 Gm17822 processed_pseudogene Interval_35059 chr12 16928150 16928386 + 0 NA intron (ENSMUSG00000020580.10, intron 2 of 32) protein_coding-intron (ENSMUSG00000020580.10, intron 2 of 32) -5963 ENSMUSG00000113202.1 ENSMUSG00000113202 ENSMUST00000222207 Gm48291 processed_pseudogene Interval_139807 chr6 108875842 108877015 + 0 NA Intergenic Intergenic -5576 ENSMUSG00000107751.1 ENSMUSG00000107751 ENSMUST00000203838 Gm6749 processed_pseudogene Interval_69215 chr16 91412732 91413771 + 0 NA intron (ENSMUSG00000093701.7, intron 3 of 4) protein_coding-intron (ENSMUSG00000022969.13, intron 3 of 6) 7087 ENSMUSG00000022969.13 ENSMUSG00000022969 ENSMUST00000137612 Il10rb protein_coding Interval_62032 chr15 86007723 86008150 + 0 NA intron (ENSMUSG00000016028.11, intron 1 of 34) protein_coding-intron (ENSMUSG00000016028.11, intron 1 of 34) -66797 ENSMUSG00000035900.18 ENSMUSG00000035900 ENSMUST00000147286 Gramd4 protein_coding Interval_83289 chr18 83607180 83607699 + 0 NA Intergenic Intergenic -4382 ENSMUSG00000117658.1 ENSMUSG00000117658 ENSMUST00000235642 Gm50417 lincRNA Interval_60306 chr15 72718923 72720374 + 0 NA intron (ENSMUSG00000047921.17, intron 18 of 21) protein_coding-intron (ENSMUSG00000047921.17, intron 18 of 21) 1739 ENSMUSG00000088364.2 ENSMUSG00000088364 ENSMUST00000157739 Gm28020 snRNA Interval_127325 chr5 102903919 102904169 + 0 NA Intergenic Intergenic 48028 ENSMUSG00000105253.1 ENSMUSG00000105253 ENSMUST00000196071 Gm42522 processed_pseudogene Interval_62329 chr15 90233849 90234084 + 0 NA TTS (ENSMUSG00000075470.2) protein_coding-TTS (ENSMUSG00000075470.2) 9606 ENSMUSG00000099319.1 ENSMUSG00000099319 ENSMUST00000183650 Mir7648 miRNA Interval_52954 chr14 52265983 52266363 + 0 NA intron (ENSMUSG00000022159.16, intron 2 of 2) protein_coding-intron (ENSMUSG00000022159.16, intron 6 of 7) 2933 ENSMUSG00000022159.16 ENSMUSG00000022159 ENSMUST00000172634 Rab2b protein_coding Interval_99052 chr2 156873609 156874086 + 0 NA TTS (ENSMUSG00000027637.3) protein_coding-TTS (ENSMUSG00000027637.3) 10702 ENSMUSG00000027637.3 ENSMUSG00000027637 ENSMUST00000126767 Rab5if protein_coding Interval_32960 chr11 113376044 113376367 + 0 NA intron (ENSMUSG00000041654.15, intron 5 of 5) protein_coding-intron (ENSMUSG00000041654.15, intron 6 of 10) -91772 ENSMUSG00000078251.2 ENSMUSG00000078251 ENSMUST00000105048 Gm16487 pseudogene Interval_100198 chr2 167586815 167589770 + 0 NA intron (ENSMUSG00000085596.1, intron 2 of 3) processed_transcript-intron (ENSMUSG00000085596.1, intron 2 of 3) -3103 ENSMUSG00000081511.1 ENSMUSG00000081511 ENSMUST00000118482 Gm11475 processed_pseudogene Interval_110729 chr4 7391232 7391807 + 0 NA Intergenic Intergenic -169169 ENSMUSG00000086070.1 ENSMUSG00000086070 ENSMUST00000129988 8430436N08Rik lincRNA Interval_138039 chr6 84512102 84513011 + 0 NA Intergenic Intergenic -23320 ENSMUSG00000107926.1 ENSMUSG00000107926 ENSMUST00000204799 4930504D19Rik lincRNA Interval_60898 chr15 77701223 77701579 + 0 NA promoter-TSS (ENSMUSG00000116438.1) processed_pseudogene-promoter-TSS (ENSMUSG00000116438.1) 277 ENSMUSG00000115926.1 ENSMUSG00000115926 ENSMUST00000229088 Gm8233 processed_pseudogene Interval_124216 chr5 41498810 41499048 + 0 NA Intergenic Intergenic -76885 ENSMUSG00000107135.1 ENSMUSG00000107135 ENSMUST00000201766 Gm43806 processed_pseudogene Interval_48754 chr13 102770200 102770717 + 0 NA intron (ENSMUSG00000034751.17, intron 16 of 27) protein_coding-intron (ENSMUSG00000034751.17, intron 16 of 27) 8023 ENSMUSG00000090329.1 ENSMUSG00000090329 ENSMUST00000170645 Gm17160 antisense Interval_12095 chr1 189717331 189718492 + 0 NA Intergenic Intergenic 32583 ENSMUSG00000103374.1 ENSMUSG00000103374 ENSMUST00000193510 Gm37239 processed_pseudogene Interval_78497 chr18 13706556 13707748 + 0 NA intron (ENSMUSG00000024420.9, intron 4 of 5) protein_coding-intron (ENSMUSG00000024420.9, intron 7 of 7) -105752 ENSMUSG00000117608.1 ENSMUSG00000117608 ENSMUST00000234112 AC103362.1 lincRNA Interval_36908 chr12 55277534 55277993 + 0 NA intron (ENSMUSG00000112368.1, intron 2 of 2) unprocessed_pseudogene-intron (ENSMUSG00000112368.1, intron 2 of 2) 2382 ENSMUSG00000112368.1 ENSMUSG00000112368 ENSMUST00000217756 Gm49376 unprocessed_pseudogene Interval_161155 chr8 117853140 117854152 + 0 NA Intergenic Intergenic 51584 ENSMUSG00000074065.4 ENSMUSG00000074065 ENSMUST00000098368 Gm10617 pseudogene Interval_146405 chr7 45717756 45718380 + 0 NA promoter-TSS (ENSMUSG00000059070.16) protein_coding-promoter-TSS (ENSMUSG00000059070.16) -1141 ENSMUSG00000059070.16 ENSMUSG00000059070 ENSMUST00000209723 Rpl18 protein_coding Interval_156968 chr8 63075346 63075871 + 0 NA intron (ENSMUSG00000054162.15, intron 2 of 10) protein_coding-intron (ENSMUSG00000054162.15, intron 1 of 10) 33199 ENSMUSG00000088419.1 ENSMUSG00000088419 ENSMUST00000157794 Gm24236 snoRNA Interval_60694 chr15 76204464 76204673 + 0 NA intron (ENSMUSG00000022565.15, intron 2 of 18) protein_coding-intron (ENSMUSG00000022565.15, intron 1 of 31) 1753 ENSMUSG00000022565.15 ENSMUSG00000022565 ENSMUST00000165135 Plec protein_coding Interval_61681 chr15 83366748 83367821 + 0 NA promoter-TSS (ENSMUSG00000075511.9) lincRNA-promoter-TSS (ENSMUSG00000075511.9) -273 ENSMUSG00000075511.9 ENSMUSG00000075511 ENSMUST00000177890 1700001L05Rik lincRNA Interval_103752 chr3 52342901 52343070 + 0 NA intron (ENSMUSG00000044167.6, intron 1 of 2) protein_coding-intron (ENSMUSG00000044167.6, intron 1 of 2) 60744 ENSMUSG00000102844.1 ENSMUSG00000102844 ENSMUST00000193915 Gm38034 TEC Interval_79634 chr18 34132034 34133203 + 0 NA Intergenic Intergenic -6901 ENSMUSG00000118054.1 ENSMUSG00000118054 ENSMUST00000238048 Gm5238 processed_pseudogene Interval_112273 chr4 39604302 39605584 + 0 NA Intergenic Intergenic 154648 ENSMUSG00000028287.4 ENSMUSG00000028287 ENSMUST00000029955 1700009N14Rik protein_coding Interval_155993 chr8 41584309 41584513 + 0 NA Intergenic Intergenic 25258 ENSMUSG00000098149.1 ENSMUSG00000098149 ENSMUST00000183246 Gapdh-ps14 processed_pseudogene Interval_39576 chr12 90985004 90985250 + 0 NA Intergenic Intergenic 3902 ENSMUSG00000084566.1 ENSMUSG00000084566 ENSMUST00000122617 Gm26477 misc_RNA Interval_107607 chr3 108855297 108858616 + 0 NA intron (ENSMUSG00000045326.13, intron 11 of 12) protein_coding-intron (ENSMUSG00000045326.13, intron 10 of 11) -16441 ENSMUSG00000027882.18 ENSMUSG00000027882 ENSMUST00000106596 Stxbp3 protein_coding Interval_60716 chr15 76326938 76327767 + 0 NA promoter-TSS (ENSMUSG00000034259.8) protein_coding-promoter-TSS (ENSMUSG00000034259.8) -113 ENSMUSG00000034259.8 ENSMUSG00000034259 ENSMUST00000167515 Exosc4 protein_coding Interval_108846 chr3 132556995 132557211 + 0 NA Intergenic Intergenic -19438 ENSMUSG00000089510.1 ENSMUSG00000089510 ENSMUST00000158885 Gm25307 snRNA Interval_11108 chr1 179426376 179427093 + 0 NA intron (ENSMUSG00000055067.15, intron 1 of 11) protein_coding-intron (ENSMUSG00000055067.15, intron 1 of 5) 91271 ENSMUSG00000055067.15 ENSMUSG00000055067 ENSMUST00000194237 Smyd3 protein_coding Interval_137981 chr6 83913856 83915226 + 0 NA exon (ENSMUSG00000030016.14, exon 1 of 1) protein_coding-intron (ENSMUSG00000030016.14, intron 1 of 3) 17582 ENSMUSG00000107991.1 ENSMUSG00000107991 ENSMUST00000204303 Gm43919 processed_pseudogene Interval_116245 chr4 109026069 109027032 + 0 NA intron (ENSMUSG00000053510.12, intron 1 of 3) protein_coding-intron (ENSMUSG00000053510.12, intron 5 of 30) 2344 ENSMUSG00000053510.12 ENSMUSG00000053510 ENSMUST00000125063 Nrd1 protein_coding Interval_59587 chr15 55648083 55648397 + 0 NA intron (ENSMUSG00000060429.12, intron 4 of 6) protein_coding-intron (ENSMUSG00000060429.12, intron 4 of 6) 30653 ENSMUSG00000022369.13 ENSMUSG00000022369 ENSMUST00000166449 Mtbp protein_coding Interval_125729 chr5 73640514 73640870 + 0 NA exon (ENSMUSG00000029156.11, exon 3 of 6) protein_coding-exon (ENSMUSG00000029156.11, exon 3 of 6) 3776 ENSMUSG00000029156.11 ENSMUSG00000029156 ENSMUST00000201416 Sgcb protein_coding Interval_14821 chr10 40286680 40286979 + 0 NA TTS (ENSMUSG00000075232.6) protein_coding-TTS (ENSMUSG00000075232.6) -4776 ENSMUSG00000111213.1 ENSMUSG00000111213 ENSMUST00000213723 Gm47867 processed_pseudogene Interval_40395 chr12 104613902 104614870 + 0 NA Intergenic Intergenic 94418 ENSMUSG00000112954.1 ENSMUSG00000112954 ENSMUST00000222329 Gm49732 lincRNA Interval_12723 chr10 4500617 4500828 + 0 NA intron (ENSMUSG00000019767.12, intron 1 of 10) protein_coding-intron (ENSMUSG00000019767.12, intron 1 of 10) 16488 ENSMUSG00000065371.1 ENSMUSG00000065371 ENSMUST00000083437 Gm22739 snRNA Interval_145371 chr7 34279887 34280227 + 0 NA intron (ENSMUSG00000066571.13, intron 2 of 13) protein_coding-intron (ENSMUSG00000066571.13, intron 1 of 12) -28702 ENSMUSG00000108737.1 ENSMUSG00000108737 ENSMUST00000207005 BC060293 TEC Interval_81403 chr18 60542023 60543769 + 0 NA TTS (ENSMUSG00000024603.8) protein_coding-TTS (ENSMUSG00000024603.8) 4466 ENSMUSG00000024603.8 ENSMUSG00000024603 ENSMUST00000224671 Dctn4 protein_coding Interval_153907 chr8 10953461 10954078 + 0 NA Intergenic Intergenic -5879 ENSMUSG00000109084.1 ENSMUSG00000109084 ENSMUST00000208843 Gm44955 lincRNA Interval_47109 chr13 75839775 75840593 + 0 NA exon (ENSMUSG00000021591.8, exon 1 of 1) protein_coding-exon (ENSMUSG00000021591.8, exon 1 of 1) 283 ENSMUSG00000021591.8 ENSMUSG00000021591 ENSMUST00000222530 Glrx protein_coding Interval_38519 chr12 79835366 79835843 + 0 NA Intergenic Intergenic 89890 ENSMUSG00000112765.1 ENSMUSG00000112765 ENSMUST00000219857 9430078K24Rik lincRNA Interval_130785 chr5 130379121 130379351 + 0 NA intron (ENSMUSG00000052014.6, intron 2 of 2) protein_coding-intron (ENSMUSG00000052014.6, intron 2 of 2) 5394 ENSMUSG00000052014.6 ENSMUSG00000052014 ENSMUST00000063656 A330070K13Rik protein_coding Interval_48049 chr13 95562961 95564597 + 0 NA Intergenic Intergenic 15197 ENSMUSG00000113969.1 ENSMUSG00000113969 ENSMUST00000221593 Gm48731 processed_pseudogene Interval_168783 chr9 87021607 87022520 + 0 NA promoter-TSS (ENSMUSG00000032872.16) protein_coding-promoter-TSS (ENSMUSG00000032872.16) -24 ENSMUSG00000032872.16 ENSMUSG00000032872 ENSMUST00000174294 Cyb5r4 protein_coding Interval_53360 chr14 56639692 56640898 + 0 NA intron (ENSMUSG00000054509.7, intron 30 of 34) protein_coding-intron (ENSMUSG00000054509.7, intron 30 of 34) -15040 ENSMUSG00000054509.7 ENSMUSG00000054509 ENSMUST00000162312 Parp4 protein_coding Interval_23399 chr11 22225792 22226051 + 0 NA intron (ENSMUSG00000042302.14, intron 5 of 24) protein_coding-intron (ENSMUSG00000042302.14, intron 4 of 23) 60874 ENSMUSG00000042302.14 ENSMUSG00000042302 ENSMUST00000137594 Ehbp1 protein_coding Interval_40162 chr12 102148614 102148984 + 0 NA intron (ENSMUSG00000041771.14, intron 2 of 16) protein_coding-intron (ENSMUSG00000041771.14, intron 2 of 16) -18893 ENSMUSG00000090050.1 ENSMUSG00000090050 ENSMUST00000160954 Gm16339 antisense Interval_160527 chr8 110382970 110383515 + 0 NA intron (ENSMUSG00000059854.8, intron 11 of 25) protein_coding-intron (ENSMUSG00000059854.8, intron 11 of 86) 38225 ENSMUSG00000064393.1 ENSMUSG00000064393 ENSMUST00000082459 Gm23627 snRNA Interval_55669 chr14 98638576 98638946 + 0 NA Intergenic Intergenic 14571 ENSMUSG00000096444.1 ENSMUSG00000096444 ENSMUST00000180098 Gm26139 snRNA Interval_135460 chr6 39440386 39440607 + 0 NA Intergenic Intergenic -18077 ENSMUSG00000064900.1 ENSMUSG00000064900 ENSMUST00000082966 Gm25402 snoRNA Interval_154435 chr8 16843089 16843376 + 0 NA intron (ENSMUSG00000060924.15, intron 3 of 10) protein_coding-intron (ENSMUSG00000060924.15, intron 3 of 69) -8936 ENSMUSG00000087892.1 ENSMUSG00000087892 ENSMUST00000157267 Gm25278 snoRNA Interval_80260 chr18 38589831 38590627 + 0 NA exon (ENSMUSG00000024427.7, exon 2 of 2) protein_coding-exon (ENSMUSG00000024427.7, exon 2 of 2) -3929 ENSMUSG00000099111.1 ENSMUSG00000099111 ENSMUST00000185182 Gm27369 misc_RNA Interval_134396 chr6 28224030 28224849 + 0 NA exon (ENSMUSG00000107320.1, exon 1 of 1) TEC-exon (ENSMUSG00000107320.1, exon 1 of 1) 1731 ENSMUSG00000107320.1 ENSMUSG00000107320 ENSMUST00000202392 Gm42549 TEC Interval_140028 chr6 113508201 113509272 + 0 NA Intergenic Intergenic -6849 ENSMUSG00000045009.9 ENSMUSG00000045009 ENSMUST00000205075 Prrt3 protein_coding Interval_82757 chr18 76843714 76844821 + 0 NA Intergenic Intergenic -12138 ENSMUSG00000091519.1 ENSMUSG00000091519 ENSMUST00000166956 Skor2 protein_coding Interval_109162 chr3 137278520 137279801 + 0 NA Intergenic Intergenic -10479 ENSMUSG00000104610.1 ENSMUSG00000104610 ENSMUST00000197127 Gm567 lincRNA Interval_121389 chr4 155468947 155470159 + 0 NA intron (ENSMUSG00000023153.9, intron 3 of 4) protein_coding-intron (ENSMUSG00000023153.9, intron 3 of 4) 439 ENSMUSG00000023153.9 ENSMUSG00000023153 ENSMUST00000145796 Tmem52 protein_coding Interval_114063 chr4 62889412 62891653 + 0 NA Intergenic Intergenic -48809 ENSMUSG00000087967.1 ENSMUSG00000087967 ENSMUST00000157342 Gm25391 snoRNA Interval_69037 chr16 90245876 90246300 + 0 NA intron (ENSMUSG00000022983.16, intron 14 of 19) protein_coding-intron (ENSMUSG00000022983.16, intron 14 of 19) 25334 ENSMUSG00000022982.10 ENSMUSG00000022982 ENSMUST00000232505 Sod1 protein_coding Interval_59953 chr15 62189775 62191328 + 0 NA intron (ENSMUSG00000097039.8, intron 1 of 3) lincRNA-intron (ENSMUSG00000097039.8, intron 5 of 8) 15129 ENSMUSG00000098595.1 ENSMUSG00000098595 ENSMUST00000184054 Gm27957 misc_RNA Interval_113817 chr4 59034864 59036755 + 0 NA promoter-TSS (ENSMUSG00000038607.12) protein_coding-promoter-TSS (ENSMUSG00000038607.12) 37 ENSMUSG00000038607.12 ENSMUSG00000038607 ENSMUST00000126507 Gng10 protein_coding Interval_171046 chr9 113970100 113970985 + 0 NA intron (ENSMUSG00000111793.1, intron 1 of 1) protein_coding-intron (ENSMUSG00000009741.15, intron 13 of 15) 456 ENSMUSG00000111793.1 ENSMUSG00000111793 ENSMUST00000214534 Gm47950 antisense Interval_23194 chr11 20462995 20463597 + 0 NA Intergenic Intergenic 16884 ENSMUSG00000083878.3 ENSMUSG00000083878 ENSMUST00000119032 Gm12034 processed_pseudogene Interval_66884 chr16 38341360 38342165 + 0 NA promoter-TSS (ENSMUSG00000022805.17) protein_coding-promoter-TSS (ENSMUSG00000022805.17) 50 ENSMUSG00000022805.17 ENSMUSG00000022805 ENSMUST00000114740 Maats1 protein_coding Interval_166110 chr9 56774329 56774728 + 0 NA intron (ENSMUSG00000049556.5, intron 2 of 3) protein_coding-intron (ENSMUSG00000049556.5, intron 2 of 3) -5405 ENSMUSG00000049556.5 ENSMUSG00000049556 ENSMUST00000210995 Lingo1 protein_coding Interval_157873 chr8 75121286 75121898 + 0 NA exon (ENSMUSG00000005410.6, exon 12 of 17) protein_coding-exon (ENSMUSG00000005410.6, exon 12 of 17) 11968 ENSMUSG00000005410.6 ENSMUSG00000005410 ENSMUST00000211912 Mcm5 protein_coding Interval_77023 chr17 85697923 85698322 + 0 NA intron (ENSMUSG00000117422.1, intron 2 of 3) lincRNA-intron (ENSMUSG00000117422.1, intron 2 of 3) 4493 ENSMUSG00000117422.1 ENSMUSG00000117422 ENSMUST00000235073 CJ186046Rik lincRNA Interval_66556 chr16 35067019 35067938 + 0 NA intron (ENSMUSG00000035376.10, intron 1 of 3) protein_coding-intron (ENSMUSG00000035376.10, intron 3 of 6) 18863 ENSMUSG00000035376.10 ENSMUSG00000035376 ENSMUST00000231556 Hacd2 protein_coding Interval_84888 chr19 18623185 18624156 + 0 NA intron (ENSMUSG00000024725.13, intron 1 of 10) protein_coding-intron (ENSMUSG00000024725.13, intron 1 of 9) 8119 ENSMUSG00000024725.13 ENSMUSG00000024725 ENSMUST00000138860 Ostf1 protein_coding Interval_154402 chr8 15652124 15652682 + 0 NA intron (ENSMUSG00000110217.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000110217.1, intron 1 of 2) 22422 ENSMUSG00000110201.1 ENSMUSG00000110201 ENSMUST00000211202 Gm45675 TEC Interval_121877 chr5 9073277 9074065 + 0 NA Intergenic Intergenic 38891 ENSMUSG00000114430.1 ENSMUSG00000114430 ENSMUST00000224996 Gm40264 lincRNA Interval_12807 chr10 5740179 5740423 + 0 NA Intergenic Intergenic 4482 ENSMUSG00000110983.1 ENSMUSG00000110983 ENSMUST00000213369 Gm47679 processed_pseudogene Interval_43806 chr13 36726582 36727818 + 0 NA promoter-TSS (ENSMUSG00000114708.1) antisense-promoter-TSS (ENSMUSG00000114708.1) -58 ENSMUSG00000114708.1 ENSMUSG00000114708 ENSMUST00000223623 Gm30177 antisense Interval_2688 chr1 43469646 43469884 + 0 NA intron (ENSMUSG00000066877.11, intron 1 of 4) protein_coding-intron (ENSMUSG00000066877.11, intron 1 of 4) -18682 ENSMUSG00000103422.1 ENSMUSG00000103422 ENSMUST00000194710 Gm37536 TEC Interval_139069 chr6 94743105 94743967 + 0 NA Intergenic Intergenic -43378 ENSMUSG00000030029.14 ENSMUSG00000030029 ENSMUST00000124165 Lrig1 protein_coding Interval_48738 chr13 102644980 102647115 + 0 NA Intergenic Intergenic 41514 ENSMUSG00000114730.1 ENSMUSG00000114730 ENSMUST00000225869 Gm47014 processed_pseudogene Interval_140882 chr6 122575134 122578520 + 0 NA TTS (ENSMUSG00000040613.14) protein_coding-TTS (ENSMUSG00000040613.14) -5978 ENSMUSG00000090192.1 ENSMUSG00000090192 ENSMUST00000162608 Gm16556 processed_transcript Interval_36274 chr12 40535629 40536850 + 0 NA intron (ENSMUSG00000035954.10, intron 1 of 5) protein_coding-intron (ENSMUSG00000035954.10, intron 1 of 52) 90156 ENSMUSG00000035954.10 ENSMUSG00000035954 ENSMUST00000220850 Dock4 protein_coding Interval_56729 chr14 121697404 121698784 + 0 NA intron (ENSMUSG00000025558.19, intron 1 of 52) protein_coding-intron (ENSMUSG00000025558.19, intron 1 of 53) 40767 ENSMUSG00000025558.19 ENSMUSG00000025558 ENSMUST00000238406 Dock9 protein_coding Interval_119172 chr4 135971575 135972991 + 0 NA promoter-TSS (ENSMUSG00000028670.14) protein_coding-promoter-TSS (ENSMUSG00000028670.14) -1813 ENSMUSG00000028670.14 ENSMUSG00000028670 ENSMUST00000150978 Lypla2 protein_coding Interval_70867 chr17 15476530 15477308 + 0 NA exon (ENSMUSG00000014769.10, exon 5 of 5) protein_coding-exon (ENSMUSG00000014769.10, exon 5 of 5) 17114 ENSMUSG00000116985.1 ENSMUSG00000116985 ENSMUST00000231639 Gm49669 processed_pseudogene Interval_174105 chrX 134963391 134964335 + 0 NA promoter-TSS (ENSMUSG00000009941.10) protein_coding-promoter-TSS (ENSMUSG00000009941.10) -7513 ENSMUSG00000009941.10 ENSMUSG00000009941 ENSMUST00000010085 Nxf2 protein_coding Interval_36069 chr12 35016436 35016682 + 0 NA Intergenic Intergenic -16002 ENSMUSG00000089043.1 ENSMUSG00000089043 ENSMUST00000158418 Gm24359 misc_RNA Interval_159759 chr8 101443036 101443239 + 0 NA Intergenic Intergenic 96571 ENSMUSG00000087985.1 ENSMUSG00000087985 ENSMUST00000157360 Gm22223 snoRNA Interval_103141 chr3 35891263 35891705 + 0 NA TTS (ENSMUSG00000027708.14) protein_coding-TTS (ENSMUSG00000027708.14) 27607 ENSMUSG00000097713.1 ENSMUSG00000097713 ENSMUST00000181445 Gm7741 processed_pseudogene Interval_142199 chr6 138183738 138184583 + 0 NA Intergenic Intergenic 43606 ENSMUSG00000008540.11 ENSMUSG00000008540 ENSMUST00000125810 Mgst1 protein_coding Interval_159878 chr8 104569791 104571556 + 0 NA Intergenic Intergenic -13686 ENSMUSG00000110607.1 ENSMUSG00000110607 ENSMUST00000212317 Gm45843 lincRNA Interval_24992 chr11 42679441 42680415 + 0 NA Intergenic Intergenic -217567 ENSMUSG00000084627.1 ENSMUSG00000084627 ENSMUST00000122678 Gm25543 misc_RNA Interval_38033 chr12 74316504 74317571 + 0 NA promoter-TSS (ENSMUSG00000079061.3) protein_coding-promoter-TSS (ENSMUSG00000079061.3) 125 ENSMUSG00000113031.1 ENSMUSG00000113031 ENSMUST00000223381 Gm34552 lincRNA Interval_5232 chr1 86611998 86612531 + 0 NA Intergenic Intergenic 25344 ENSMUSG00000084468.1 ENSMUSG00000084468 ENSMUST00000122519 Gm22955 miRNA Interval_19748 chr10 108452567 108452939 + 0 NA exon (ENSMUSG00000112532.1, exon 3 of 3) lincRNA-exon (ENSMUSG00000112532.1, exon 3 of 3) 6151 ENSMUSG00000112532.1 ENSMUSG00000112532 ENSMUST00000220211 Gm36283 lincRNA Interval_7019 chr1 122428226 122428937 + 0 NA Intergenic Intergenic -81968 ENSMUSG00000089274.1 ENSMUSG00000089274 ENSMUST00000158649 Gm24547 snRNA Interval_22898 chr11 17187463 17187678 + 0 NA intron (ENSMUSG00000078970.5, intron 1 of 12) protein_coding-intron (ENSMUSG00000033953.10, intron 2 of 5) -5274 ENSMUSG00000033953.10 ENSMUSG00000033953 ENSMUST00000154425 Ppp3r1 protein_coding Interval_133580 chr6 7029870 7030041 + 0 NA intron (ENSMUSG00000042505.6, intron 1 of 1) protein_coding-intron (ENSMUSG00000042505.6, intron 1 of 1) 73948 ENSMUSG00000042505.6 ENSMUSG00000042505 ENSMUST00000123848 Sdhaf3 protein_coding Interval_158664 chr8 85016696 85017474 + 0 NA TTS (ENSMUSG00000052456.9) protein_coding-TTS (ENSMUSG00000052456.9) -2554 ENSMUSG00000052819.6 ENSMUSG00000052819 ENSMUST00000209421 Best2 protein_coding Interval_76861 chr17 84579545 84580833 + 0 NA intron (ENSMUSG00000040852.6, intron 2 of 2) protein_coding-intron (ENSMUSG00000040852.6, intron 15 of 29) 4639 ENSMUSG00000040852.6 ENSMUSG00000040852 ENSMUST00000235090 Plekhh2 protein_coding Interval_89111 chr2 16629729 16629975 + 0 NA intron (ENSMUSG00000026748.13, intron 3 of 12) protein_coding-intron (ENSMUSG00000026748.13, intron 4 of 13) -8844 ENSMUSG00000026748.13 ENSMUSG00000026748 ENSMUST00000126173 Plxdc2 protein_coding Interval_35238 chr12 18656317 18656769 + 0 NA Intergenic Intergenic 8329 ENSMUSG00000116815.1 ENSMUSG00000116815 ENSMUST00000232086 Gm49760 processed_pseudogene Interval_117605 chr4 124978200 124978436 + 0 NA intron (ENSMUSG00000087011.1, intron 1 of 1) antisense-intron (ENSMUSG00000087011.1, intron 1 of 1) 8691 ENSMUSG00000087011.1 ENSMUSG00000087011 ENSMUST00000146679 Gm12930 antisense Interval_109678 chr3 145950114 145950611 + 0 NA Intergenic Intergenic 12077 ENSMUSG00000036873.13 ENSMUSG00000036873 ENSMUST00000188034 2410004B18Rik protein_coding Interval_87623 chr19 53789183 53789503 + 0 NA intron (ENSMUSG00000043639.15, intron 1 of 13) protein_coding-intron (ENSMUSG00000043639.15, intron 1 of 13) -21033 ENSMUSG00000089807.1 ENSMUSG00000089807 ENSMUST00000161107 Gm16298 processed_pseudogene Interval_132283 chr5 143925908 143926322 + 0 NA TTS (ENSMUSG00000079109.11) protein_coding-TTS (ENSMUSG00000079109.11) -2060 ENSMUSG00000104633.1 ENSMUSG00000104633 ENSMUST00000172367 Gm42421 protein_coding Interval_54438 chr14 69774256 69775313 + 0 NA intron (ENSMUSG00000022074.6, intron 3 of 5) protein_coding-intron (ENSMUSG00000022074.6, intron 3 of 7) 7299 ENSMUSG00000022074.6 ENSMUSG00000022074 ENSMUST00000224235 Tnfrsf10b protein_coding Interval_132205 chr5 143333895 143335506 + 0 NA promoter-TSS (ENSMUSG00000104875.1) lincRNA-promoter-TSS (ENSMUSG00000104875.1) 65 ENSMUSG00000104875.1 ENSMUSG00000104875 ENSMUST00000196422 Gm43397 lincRNA Interval_164932 chr9 43199292 43200758 + 0 NA intron (ENSMUSG00000032015.16, intron 1 of 12) protein_coding-intron (ENSMUSG00000032015.16, intron 1 of 12) -17097 ENSMUSG00000111864.1 ENSMUSG00000111864 ENSMUST00000216693 Rpl26-ps6 processed_pseudogene Interval_51235 chr14 25439701 25440720 + 0 NA intron (ENSMUSG00000087535.2, intron 2 of 3) antisense-intron (ENSMUSG00000087535.2, intron 2 of 3) -1431 ENSMUSG00000114232.1 ENSMUSG00000114232 ENSMUST00000224582 Gm17747 lincRNA Interval_13444 chr10 18325311 18325591 + 0 NA intron (ENSMUSG00000039835.16, intron 1 of 6) protein_coding-intron (ENSMUSG00000039835.16, intron 1 of 6) 6466 ENSMUSG00000039835.16 ENSMUSG00000039835 ENSMUST00000100054 Nhsl1 protein_coding Interval_113218 chr4 50365267 50366260 + 0 NA Intergenic Intergenic 79017 ENSMUSG00000095394.1 ENSMUSG00000095394 ENSMUST00000104120 Gm25485 snoRNA Interval_159749 chr8 100772675 100773189 + 0 NA Intergenic Intergenic -46577 ENSMUSG00000109769.1 ENSMUSG00000109769 ENSMUST00000210760 Gm39232 lincRNA Interval_162951 chr9 13690167 13690583 + 0 NA intron (ENSMUSG00000031925.17, intron 1 of 3) protein_coding-intron (ENSMUSG00000031925.17, intron 1 of 3) 27915 ENSMUSG00000031925.17 ENSMUSG00000031925 ENSMUST00000177755 Maml2 protein_coding Interval_25356 chr11 46633850 46634044 + 0 NA Intergenic Intergenic -4686 ENSMUSG00000064010.12 ENSMUSG00000064010 ENSMUST00000109227 Dppa1 protein_coding Interval_32856 chr11 112155033 112155596 + 0 NA Intergenic Intergenic 47876 ENSMUSG00000085324.1 ENSMUSG00000085324 ENSMUST00000146550 Gm11680 lincRNA Interval_21810 chr11 4482374 4483322 + 0 NA TTS (ENSMUSG00000034354.17) protein_coding-TTS (ENSMUSG00000034354.17) 5518 ENSMUSG00000034354.17 ENSMUSG00000034354 ENSMUST00000144242 Mtmr3 protein_coding Interval_80627 chr18 44799697 44800438 + 0 NA intron (ENSMUSG00000071856.10, intron 1 of 18) protein_coding-intron (ENSMUSG00000071856.10, intron 1 of 18) -21066 ENSMUSG00000117832.1 ENSMUSG00000117832 ENSMUST00000237858 Gm50263 processed_pseudogene Interval_14215 chr10 28997699 28998234 + 0 NA Intergenic Intergenic -7526 ENSMUSG00000110846.1 ENSMUSG00000110846 ENSMUST00000215790 Gm18508 processed_pseudogene Interval_86277 chr19 38338126 38338293 + 0 NA Intergenic Intergenic 4405 ENSMUSG00000118381.1 ENSMUSG00000118381 ENSMUST00000237671 Gm50150 processed_pseudogene Interval_53309 chr14 55940200 55941803 + 0 NA TTS (ENSMUSG00000022225.7) protein_coding-TTS (ENSMUSG00000022225.7) -3406 ENSMUSG00000114978.1 ENSMUSG00000114978 ENSMUST00000227704 Gm48925 lincRNA Interval_89899 chr2 26324860 26326340 + 0 NA promoter-TSS (ENSMUSG00000026930.15) protein_coding-promoter-TSS (ENSMUSG00000026930.15) -434 ENSMUSG00000026930.15 ENSMUSG00000026930 ENSMUST00000142057 Gpsm1 protein_coding Interval_71801 chr17 26186318 26186694 + 0 NA intron (ENSMUSG00000024182.16, intron 5 of 9) protein_coding-intron (ENSMUSG00000024182.16, intron 5 of 10) -1647 ENSMUSG00000024182.16 ENSMUSG00000024182 ENSMUST00000169268 Axin1 protein_coding Interval_68173 chr16 66816448 66817037 + 0 NA intron (ENSMUSG00000064115.13, intron 2 of 3) protein_coding-intron (ENSMUSG00000064115.13, intron 3 of 9) -75761 ENSMUSG00000045178.10 ENSMUSG00000045178 ENSMUST00000050665 4933411O13Rik antisense Interval_135332 chr6 38380816 38381864 + 0 NA promoter-TSS (ENSMUSG00000056832.14) protein_coding-promoter-TSS (ENSMUSG00000056832.14) -129 ENSMUSG00000056832.14 ENSMUSG00000056832 ENSMUST00000162486 Ttc26 protein_coding Interval_565 chr1 7493583 7494561 + 0 NA Intergenic Intergenic -3896 ENSMUSG00000103067.1 ENSMUSG00000103067 ENSMUST00000194886 Gm30414 lincRNA Interval_69034 chr16 90233459 90234567 + 0 NA intron (ENSMUSG00000022983.16, intron 19 of 19) protein_coding-intron (ENSMUSG00000022983.16, intron 19 of 19) 13259 ENSMUSG00000022982.10 ENSMUSG00000022982 ENSMUST00000232505 Sod1 protein_coding Interval_146559 chr7 46824891 46825861 + 0 NA Intergenic Intergenic -3959 ENSMUSG00000087298.3 ENSMUSG00000087298 ENSMUST00000119337 Gm9392 processed_pseudogene Interval_9731 chr1 161379685 161380272 + 0 NA Intergenic Intergenic -15431 ENSMUSG00000026700.4 ENSMUSG00000026700 ENSMUST00000028024 Tnfsf4 protein_coding Interval_81920 chr18 65887607 65888515 + 0 NA intron (ENSMUSG00000118170.1, intron 2 of 3) antisense-intron (ENSMUSG00000118170.1, intron 2 of 3) 6694 ENSMUSG00000118170.1 ENSMUSG00000118170 ENSMUST00000237028 Gm30094 antisense Interval_81639 chr18 62749375 62749983 + 0 NA Intergenic Intergenic 6636 ENSMUSG00000041789.7 ENSMUSG00000041789 ENSMUST00000048109 2700046A07Rik lincRNA Interval_31425 chr11 100593625 100593885 + 0 NA intron (ENSMUSG00000014195.16, intron 5 of 13) protein_coding-intron (ENSMUSG00000014195.16, intron 5 of 13) 18231 ENSMUSG00000006782.16 ENSMUSG00000006782 ENSMUST00000147403 Cnp protein_coding Interval_71672 chr17 25288507 25289230 + 0 NA Intergenic Intergenic -9526 ENSMUSG00000056399.2 ENSMUSG00000056399 ENSMUST00000037453 Prss34 protein_coding Interval_862 chr1 12771392 12771615 + 0 NA intron (ENSMUSG00000016918.15, intron 2 of 3) protein_coding-intron (ENSMUSG00000016918.15, intron 2 of 21) 52039 ENSMUSG00000016918.15 ENSMUSG00000016918 ENSMUST00000185780 Sulf1 protein_coding Interval_128972 chr5 116395052 116396708 + 0 NA Intergenic Intergenic -3080 ENSMUSG00000086945.1 ENSMUSG00000086945 ENSMUST00000153818 4930562A09Rik lincRNA Interval_140842 chr6 122295124 122295955 + 0 NA promoter-TSS (ENSMUSG00000108090.1) processed_pseudogene-promoter-TSS (ENSMUSG00000108090.1) -125 ENSMUSG00000108090.1 ENSMUSG00000108090 ENSMUST00000204884 Gm6637 processed_pseudogene Interval_149177 chr7 95984734 95985939 + 0 NA Intergenic Intergenic -71950 ENSMUSG00000108628.1 ENSMUSG00000108628 ENSMUST00000205327 Gm5037 processed_pseudogene Interval_96265 chr2 121069724 121070536 + 0 NA intron (ENSMUSG00000053675.8, intron 6 of 12) protein_coding-intron (ENSMUSG00000053675.8, intron 6 of 12) 15692 ENSMUSG00000053675.8 ENSMUSG00000053675 ENSMUST00000142674 Tgm5 protein_coding Interval_115982 chr4 106793987 106794964 + 0 NA intron (ENSMUSG00000034853.16, intron 1 of 15) protein_coding-intron (ENSMUSG00000034853.16, intron 1 of 15) 5368 ENSMUSG00000034853.16 ENSMUSG00000034853 ENSMUST00000148688 Acot11 protein_coding Interval_174762 chrX 166170037 166170865 + 0 NA promoter-TSS (ENSMUSG00000040621.14) protein_coding-promoter-TSS (ENSMUSG00000040621.14) -7951 ENSMUSG00000040621.14 ENSMUSG00000040621 ENSMUST00000152248 Gemin8 protein_coding Interval_156385 chr8 47849938 47850153 + 0 NA intron (ENSMUSG00000031563.8, intron 17 of 22) protein_coding-intron (ENSMUSG00000031563.8, intron 17 of 22) 25563 ENSMUSG00000038064.7 ENSMUSG00000038064 ENSMUST00000038693 Cldn22 protein_coding Interval_39785 chr12 98282623 98282994 + 0 NA Intergenic Intergenic -3147 ENSMUSG00000112510.1 ENSMUSG00000112510 ENSMUST00000218404 Gm47566 antisense Interval_114399 chr4 75186093 75186451 + 0 NA Intergenic Intergenic 38663 ENSMUSG00000081067.1 ENSMUSG00000081067 ENSMUST00000121596 Gm12912 processed_pseudogene Interval_80566 chr18 44288720 44290674 + 0 NA Intergenic Intergenic 19570 ENSMUSG00000038071.3 ENSMUSG00000038071 ENSMUST00000042747 Npy6r protein_coding Interval_44090 chr13 40820580 40821146 + 0 NA Intergenic Intergenic 17793 ENSMUSG00000114263.1 ENSMUSG00000114263 ENSMUST00000225513 Gm7201 processed_pseudogene Interval_111266 chr4 16208762 16209510 + 0 NA intron (ENSMUSG00000085112.1, intron 2 of 6) processed_transcript-intron (ENSMUSG00000085112.1, intron 2 of 6) -37133 ENSMUSG00000083725.1 ENSMUSG00000083725 ENSMUST00000118093 Gm11865 processed_pseudogene Interval_148619 chr7 83400861 83401880 + 0 NA Intergenic Intergenic -10607 ENSMUSG00000108831.1 ENSMUSG00000108831 ENSMUST00000207404 Gm7957 processed_pseudogene Interval_2391 chr1 38931085 38931286 + 0 NA Intergenic Intergenic -8018 ENSMUSG00000067604.8 ENSMUSG00000067604 ENSMUST00000160214 Nms protein_coding Interval_114581 chr4 82705080 82705572 + 0 NA intron (ENSMUSG00000008575.17, intron 1 of 1) protein_coding-intron (ENSMUSG00000008575.17, intron 1 of 1) 424 ENSMUSG00000008575.17 ENSMUSG00000008575 ENSMUST00000152588 Nfib protein_coding Interval_74868 chr17 56976790 56977379 + 0 NA intron (ENSMUSG00000045019.4, intron 1 of 5) protein_coding-intron (ENSMUSG00000045019.4, intron 1 of 5) 5042 ENSMUSG00000045019.4 ENSMUSG00000045019 ENSMUST00000056113 Acer1 protein_coding Interval_144240 chr7 23729810 23729987 + 0 NA Intergenic Intergenic -22372 ENSMUSG00000090411.2 ENSMUSG00000090411 ENSMUST00000167551 Vmn1r174 protein_coding Interval_123747 chr5 35135974 35136505 + 0 NA Intergenic Intergenic -33725 ENSMUSG00000029103.16 ENSMUSG00000029103 ENSMUST00000132754 Lrpap1 protein_coding Interval_87298 chr19 47449999 47451285 + 0 NA intron (ENSMUSG00000053617.12, intron 1 of 13) protein_coding-intron (ENSMUSG00000053617.12, intron 1 of 14) -40283 ENSMUSG00000053617.12 ENSMUSG00000053617 ENSMUST00000237828 Sh3pxd2a protein_coding Interval_7589 chr1 132365397 132366251 + 0 NA promoter-TSS (ENSMUSG00000042066.16) protein_coding-promoter-TSS (ENSMUSG00000042066.16) 2063 ENSMUSG00000042066.16 ENSMUSG00000042066 ENSMUST00000125439 Tmcc2 protein_coding Interval_157741 chr8 72668732 72669101 + 0 NA intron (ENSMUSG00000048148.18, intron 5 of 18) protein_coding-intron (ENSMUSG00000048148.18, intron 5 of 18) -15398 ENSMUSG00000093276.1 ENSMUSG00000093276 ENSMUST00000175535 Gm26237 miRNA Interval_76463 chr17 80383497 80384251 + 0 NA intron (ENSMUSG00000054901.7, intron 1 of 1) protein_coding-intron (ENSMUSG00000054901.7, intron 16 of 17) 2510 ENSMUSG00000054901.7 ENSMUSG00000054901 ENSMUST00000226013 Arhgef33 protein_coding Interval_110190 chr3 154092777 154093084 + 0 NA intron (ENSMUSG00000028360.10, intron 1 of 21) protein_coding-intron (ENSMUSG00000028360.10, intron 1 of 21) -39410 ENSMUSG00000090114.1 ENSMUSG00000090114 ENSMUST00000161613 Gm3076 processed_pseudogene Interval_164778 chr9 41698301 41698771 + 0 NA exon (ENSMUSG00000110862.1, exon 4 of 4) lincRNA-exon (ENSMUSG00000110862.1, exon 4 of 4) -23482 ENSMUSG00000110727.1 ENSMUSG00000110727 ENSMUST00000214294 Gm48784 lincRNA Interval_3687 chr1 60837019 60837345 + 0 NA Intergenic Intergenic 28066 ENSMUSG00000083355.1 ENSMUSG00000083355 ENSMUST00000122024 Gm11581 processed_pseudogene Interval_6409 chr1 107318854 107319835 + 0 NA Intergenic Intergenic -16990 ENSMUSG00000084189.1 ENSMUSG00000084189 ENSMUST00000122463 Gm8089 unprocessed_pseudogene Interval_47172 chr13 77042229 77042480 + 0 NA TTS (ENSMUSG00000021597.16) protein_coding-TTS (ENSMUSG00000021597.16) 93111 ENSMUSG00000021597.16 ENSMUSG00000021597 ENSMUST00000162320 Slf1 protein_coding Interval_104523 chr3 67429465 67430647 + 0 NA promoter-TSS (ENSMUSG00000027774.16) protein_coding-promoter-TSS (ENSMUSG00000027774.16) -60 ENSMUSG00000027774.16 ENSMUSG00000027774 ENSMUST00000160529 Gfm1 protein_coding Interval_110731 chr4 7522888 7524109 + 0 NA Intergenic Intergenic -37190 ENSMUSG00000086070.1 ENSMUSG00000086070 ENSMUST00000129988 8430436N08Rik lincRNA Interval_94335 chr2 89558256 89558576 + 0 NA Intergenic Intergenic 20031 ENSMUSG00000111456.1 ENSMUSG00000111456 ENSMUST00000214870 Olfr1245 protein_coding Interval_129363 chr5 119550831 119551209 + 0 NA Intergenic Intergenic -23066 ENSMUSG00000106938.1 ENSMUSG00000106938 ENSMUST00000201435 Gm31314 lincRNA Interval_36651 chr12 51766182 51766431 + 0 NA intron (ENSMUSG00000035247.16, intron 26 of 42) protein_coding-intron (ENSMUSG00000035247.16, intron 26 of 42) 16275 ENSMUSG00000035247.16 ENSMUSG00000035247 ENSMUST00000217804 Hectd1 protein_coding Interval_170319 chr9 106903561 106904358 + 0 NA intron (ENSMUSG00000039716.12, intron 8 of 11) protein_coding-intron (ENSMUSG00000039716.12, intron 49 of 52) 9195 ENSMUSG00000039716.12 ENSMUSG00000039716 ENSMUST00000165182 Dock3 protein_coding Interval_124428 chr5 46317560 46317938 + 0 NA Intergenic Intergenic -96595 ENSMUSG00000067321.5 ENSMUSG00000067321 ENSMUST00000121537 Gm7931 processed_pseudogene Interval_16605 chr10 65033386 65035078 + 0 NA Intergenic Intergenic 86135 ENSMUSG00000100528.1 ENSMUSG00000100528 ENSMUST00000187710 Gm28881 lincRNA Interval_65844 chr16 29746004 29746542 + 0 NA Intergenic Intergenic 8039 ENSMUSG00000116814.1 ENSMUSG00000116814 ENSMUST00000232037 Gm49636 lincRNA Interval_80167 chr18 37989721 37989941 + 0 NA intron (ENSMUSG00000024451.9, intron 10 of 15) protein_coding-intron (ENSMUSG00000024451.9, intron 10 of 32) 1114 ENSMUSG00000098297.1 ENSMUSG00000098297 ENSMUST00000185063 Mir6980 miRNA Interval_150342 chr7 109727073 109727860 + 0 NA TTS (ENSMUSG00000035951.2) protein_coding-TTS (ENSMUSG00000035951.2) 4260 ENSMUSG00000035951.2 ENSMUSG00000035951 ENSMUST00000035372 Ascl3 protein_coding Interval_17890 chr10 80613917 80614521 + 0 NA intron (ENSMUSG00000113949.1, intron 1 of 1) protein_coding-intron (ENSMUSG00000113949.1, intron 6 of 6) 4959 ENSMUSG00000099283.1 ENSMUSG00000099283 ENSMUST00000184456 Mir6912 miRNA Interval_158607 chr8 84722588 84723898 + 0 NA exon (ENSMUSG00000074203.4, exon 1 of 2) protein_coding-exon (ENSMUSG00000074203.4, exon 1 of 2) 236 ENSMUSG00000074203.4 ENSMUSG00000074203 ENSMUST00000098571 G430095P16Rik protein_coding Interval_128300 chr5 112394332 112395462 + 0 NA promoter-TSS (ENSMUSG00000029348.11) protein_coding-promoter-TSS (ENSMUSG00000029348.11) -873 ENSMUSG00000029348.11 ENSMUSG00000029348 ENSMUST00000199095 Asphd2 protein_coding Interval_38703 chr12 81199145 81200003 + 0 NA exon (ENSMUSG00000079055.10, exon 8 of 8) protein_coding-exon (ENSMUSG00000079055.10, exon 8 of 8) -28710 ENSMUSG00000098128.1 ENSMUSG00000098128 ENSMUST00000182077 Gm3693 antisense Interval_75952 chr17 73684137 73684874 + 0 NA intron (ENSMUSG00000024064.14, intron 1 of 9) protein_coding-intron (ENSMUSG00000024064.14, intron 1 of 14) 25561 ENSMUSG00000024064.14 ENSMUSG00000024064 ENSMUST00000146565 Galnt14 protein_coding Interval_135251 chr6 37842893 37844612 + 0 NA Intergenic Intergenic 22812 ENSMUSG00000106853.1 ENSMUSG00000106853 ENSMUST00000201745 Gm7492 processed_pseudogene Interval_58578 chr15 36323082 36323333 + 0 NA Intergenic Intergenic -14263 ENSMUSG00000068579.5 ENSMUSG00000068579 ENSMUST00000090170 Rpl7a-ps3 processed_pseudogene Interval_328 chr1 4032741 4032947 + 0 NA intron (ENSMUSG00000025900.13, intron 26 of 29) protein_coding-intron (ENSMUSG00000025900.13, intron 26 of 29) -46629 ENSMUSG00000102343.1 ENSMUSG00000102343 ENSMUST00000192427 Gm37381 lincRNA Interval_31853 chr11 103359017 103363658 + 0 NA promoter-TSS (ENSMUSG00000034255.17) protein_coding-promoter-TSS (ENSMUSG00000034255.17) -1876 ENSMUSG00000085733.1 ENSMUSG00000085733 ENSMUST00000130556 Arhgap27os1 antisense Interval_70532 chr17 11611183 11613474 + 0 NA intron (ENSMUSG00000023826.16, intron 5 of 10) protein_coding-intron (ENSMUSG00000023826.16, intron 6 of 11) -66530 ENSMUSG00000099618.1 ENSMUSG00000099618 ENSMUST00000185957 Gm28118 processed_pseudogene Interval_33537 chr11 117091246 117092999 + 0 NA Intergenic Intergenic 4905 ENSMUSG00000087057.7 ENSMUSG00000087057 ENSMUST00000147186 Gm11730 antisense Interval_61592 chr15 82840418 82840654 + 0 NA intron (ENSMUSG00000041852.15, intron 2 of 5) protein_coding-intron (ENSMUSG00000041852.15, intron 2 of 4) -36572 ENSMUSG00000116280.1 ENSMUSG00000116280 ENSMUST00000229945 Gm49435 unprocessed_pseudogene Interval_100120 chr2 167176961 167177866 + 0 NA intron (ENSMUSG00000050556.9, intron 1 of 1) protein_coding-intron (ENSMUSG00000050556.9, intron 2 of 2) -11289 ENSMUSG00000085151.7 ENSMUSG00000085151 ENSMUST00000147446 1110018N20Rik processed_transcript Interval_45849 chr13 58536649 58536987 + 0 NA Intergenic Intergenic -9210 ENSMUSG00000114234.1 ENSMUSG00000114234 ENSMUST00000223882 Gm3131 processed_pseudogene Interval_145526 chr7 35366831 35367533 + 0 NA intron (ENSMUSG00000030494.13, intron 4 of 15) protein_coding-intron (ENSMUSG00000030494.13, intron 4 of 14) -15383 ENSMUSG00000030494.13 ENSMUSG00000030494 ENSMUST00000187997 Rhpn2 protein_coding Interval_120612 chr4 149697987 149698928 + 0 NA promoter-TSS (ENSMUSG00000039936.18) protein_coding-promoter-TSS (ENSMUSG00000039936.18) -24263 ENSMUSG00000039936.18 ENSMUSG00000039936 ENSMUST00000124510 Pik3cd protein_coding Interval_4786 chr1 78632595 78633592 + 0 NA Intergenic Intergenic 17626 ENSMUSG00000100562.1 ENSMUSG00000100562 ENSMUST00000186132 Gm29611 lincRNA Interval_132014 chr5 142282498 142282737 + 0 NA promoter-TSS (ENSMUSG00000097947.1) processed_pseudogene-promoter-TSS (ENSMUSG00000097947.1) -489 ENSMUSG00000097947.1 ENSMUSG00000097947 ENSMUST00000182990 Gm26970 processed_pseudogene Interval_172074 chrX 6091793 6092703 + 0 NA promoter-TSS (ENSMUSG00000097342.1) sense_overlapping-promoter-TSS (ENSMUSG00000097342.1) 21 ENSMUSG00000097342.1 ENSMUSG00000097342 ENSMUST00000181123 Gm26618 sense_overlapping Interval_169707 chr9 100534397 100534589 + 0 NA intron (ENSMUSG00000032475.15, intron 1 of 2) protein_coding-intron (ENSMUSG00000032475.15, intron 1 of 3) -3422 ENSMUSG00000100176.1 ENSMUSG00000100176 ENSMUST00000189857 Gm28586 sense_intronic Interval_79335 chr18 30684792 30685677 + 0 NA Intergenic Intergenic -76344 ENSMUSG00000117526.1 ENSMUSG00000117526 ENSMUST00000235078 Gm41780 processed_pseudogene Interval_146791 chr7 51510381 51511582 + 0 NA promoter-TSS (ENSMUSG00000055489.8) protein_coding-promoter-TSS (ENSMUSG00000055489.8) -126 ENSMUSG00000055489.8 ENSMUSG00000055489 ENSMUST00000207717 Ano5 protein_coding Interval_99394 chr2 160578434 160579171 + 0 NA intron (ENSMUSG00000078956.3, intron 1 of 2) lincRNA-intron (ENSMUSG00000078956.3, intron 1 of 2) -4555 ENSMUSG00000078955.3 ENSMUSG00000078955 ENSMUST00000128681 Gm14222 sense_intronic Interval_144030 chr7 19066843 19067503 + 0 NA exon (ENSMUSG00000040866.13, exon 4 of 6) protein_coding-exon (ENSMUSG00000040866.13, exon 4 of 6) 9778 ENSMUSG00000040866.13 ENSMUSG00000040866 ENSMUST00000144991 Rsph6a protein_coding Interval_14266 chr10 30107286 30107528 + 0 NA Intergenic Intergenic -22073 ENSMUSG00000111001.1 ENSMUSG00000111001 ENSMUST00000215786 Gm8767 processed_pseudogene Interval_114665 chr4 83587388 83588203 + 0 NA intron (ENSMUSG00000052407.17, intron 7 of 25) protein_coding-intron (ENSMUSG00000052407.17, intron 7 of 25) -9508 ENSMUSG00000098217.1 ENSMUSG00000098217 ENSMUST00000182160 Gm27046 processed_pseudogene Interval_17220 chr10 75067527 75067796 + 0 NA intron (ENSMUSG00000009681.10, intron 1 of 22) protein_coding-intron (ENSMUSG00000009681.10, intron 1 of 22) 30572 ENSMUSG00000020175.15 ENSMUSG00000020175 ENSMUST00000151432 Rab36 protein_coding Interval_49445 chr13 112067933 112068199 + 0 NA Intergenic Intergenic 62564 ENSMUSG00000086092.1 ENSMUSG00000086092 ENSMUST00000156109 Gm15323 lincRNA Interval_84104 chr19 7234564 7235797 + 0 NA intron (ENSMUSG00000024764.10, intron 1 of 5) protein_coding-intron (ENSMUSG00000024764.10, intron 1 of 7) 5874 ENSMUSG00000024764.10 ENSMUSG00000024764 ENSMUST00000235323 Naa40 protein_coding Interval_78406 chr18 12553682 12554159 + 0 NA intron (ENSMUSG00000024421.16, intron 27 of 37) protein_coding-intron (ENSMUSG00000024421.16, intron 64 of 74) 24617 ENSMUSG00000088342.1 ENSMUSG00000088342 ENSMUST00000157717 Gm22340 rRNA Interval_60327 chr15 72929083 72929594 + 0 NA intron (ENSMUSG00000047921.17, intron 14 of 16) protein_coding-intron (ENSMUSG00000047921.17, intron 14 of 21) 15981 ENSMUSG00000096173.2 ENSMUSG00000096173 ENSMUST00000166418 Gm3150 processed_pseudogene Interval_16665 chr10 66920118 66921717 + 0 NA promoter-TSS (ENSMUSG00000097134.2) lincRNA-promoter-TSS (ENSMUSG00000097134.2) 615 ENSMUSG00000097921.2 ENSMUSG00000097921 ENSMUST00000181018 Gm26576 lincRNA Interval_138003 chr6 84077975 84079169 + 0 NA intron (ENSMUSG00000033788.15, intron 13 of 55) protein_coding-intron (ENSMUSG00000033788.15, intron 14 of 54) 28435 ENSMUSG00000087001.2 ENSMUSG00000087001 ENSMUST00000137673 Gm15475 antisense Interval_75133 chr17 63821826 63822926 + 0 NA Intergenic Intergenic -40686 ENSMUSG00000000127.15 ENSMUSG00000000127 ENSMUST00000038080 Fer protein_coding Interval_135311 chr6 38223975 38224743 + 0 NA intron (ENSMUSG00000063455.16, intron 1 of 19) protein_coding-intron (ENSMUSG00000063455.16, intron 1 of 19) 29650 ENSMUSG00000063455.16 ENSMUSG00000063455 ENSMUST00000152464 D630045J12Rik protein_coding Interval_71646 chr17 25115054 25116444 + 0 NA promoter-TSS (ENSMUSG00000024170.15) protein_coding-promoter-TSS (ENSMUSG00000024170.15) -5179 ENSMUSG00000044172.7 ENSMUSG00000044172 ENSMUST00000233641 Ptx4 protein_coding Interval_9250 chr1 155491466 155492248 + 0 NA Intergenic Intergenic 35286 ENSMUSG00000073535.5 ENSMUSG00000073535 ENSMUST00000194133 Gm5532 lincRNA Interval_117524 chr4 124367782 124367969 + 0 NA Intergenic Intergenic -32194 ENSMUSG00000088933.1 ENSMUSG00000088933 ENSMUST00000158308 Gm22983 snRNA Interval_41653 chr12 117417631 117417939 + 0 NA Intergenic Intergenic -80773 ENSMUSG00000101930.1 ENSMUSG00000101930 ENSMUST00000186454 Gm5441 antisense Interval_20351 chr10 117045378 117046356 + 0 NA TTS (ENSMUSG00000112242.1) lincRNA-TTS (ENSMUSG00000112242.1) 526 ENSMUSG00000060187.4 ENSMUSG00000060187 ENSMUST00000073834 Lrrc10 protein_coding Interval_59546 chr15 55189244 55190096 + 0 NA intron (ENSMUSG00000022419.16, intron 4 of 4) protein_coding-intron (ENSMUSG00000022419.16, intron 4 of 8) 56217 ENSMUSG00000022419.16 ENSMUSG00000022419 ENSMUST00000226687 Deptor protein_coding Interval_64095 chr16 8078424 8078907 + 0 NA Intergenic Intergenic 25123 ENSMUSG00000116151.1 ENSMUSG00000116151 ENSMUST00000229220 Gm49535 processed_pseudogene Interval_126026 chr5 76943034 76943241 + 0 NA intron (ENSMUSG00000072852.4, intron 1 of 1) protein_coding-intron (ENSMUSG00000029246.14, intron 1 of 9) 8435 ENSMUSG00000029246.14 ENSMUSG00000029246 ENSMUST00000031158 Ppat protein_coding Interval_131545 chr5 137998224 137998752 + 0 NA Intergenic Intergenic -5064 ENSMUSG00000063739.2 ENSMUSG00000063739 ENSMUST00000072718 Gm4963 processed_pseudogene Interval_129857 chr5 122770528 122771066 + 0 NA intron (ENSMUSG00000029471.13, intron 1 of 2) protein_coding-intron (ENSMUSG00000029471.13, intron 1 of 16) 8536 ENSMUSG00000029471.13 ENSMUSG00000029471 ENSMUST00000199599 Camkk2 protein_coding Interval_163502 chr9 21751315 21754137 + 0 NA Intergenic Intergenic 7556 ENSMUSG00000074476.6 ENSMUSG00000074476 ENSMUST00000214149 Spc24 protein_coding Interval_86758 chr19 43661874 43662764 + 0 NA Intergenic Intergenic 4824 ENSMUSG00000040414.8 ENSMUSG00000040414 ENSMUST00000236433 Slc25a28 protein_coding Interval_123131 chr5 30007455 30008116 + 0 NA promoter-TSS (ENSMUSG00000105439.1) lincRNA-promoter-TSS (ENSMUSG00000105439.1) 1013 ENSMUSG00000105439.1 ENSMUSG00000105439 ENSMUST00000199600 A230098N10Rik lincRNA Interval_169306 chr9 96285135 96285529 + 0 NA intron (ENSMUSG00000032411.15, intron 2 of 6) protein_coding-intron (ENSMUSG00000032411.15, intron 2 of 6) -3025 ENSMUSG00000032411.15 ENSMUSG00000032411 ENSMUST00000191133 Tfdp2 protein_coding Interval_71253 chr17 21626910 21627158 + 0 NA intron (ENSMUSG00000117070.1, intron 2 of 2) transcribed_processed_pseudogene-intron (ENSMUSG00000117013.1, intron 1 of 4) 11533 ENSMUSG00000117013.1 ENSMUSG00000117013 ENSMUST00000232774 Gm30531 transcribed_processed_pseudogene Interval_99468 chr2 161716512 161716734 + 0 NA intron (ENSMUSG00000053141.16, intron 3 of 3) protein_coding-intron (ENSMUSG00000053141.16, intron 13 of 30) 83532 ENSMUSG00000053141.16 ENSMUSG00000053141 ENSMUST00000129015 Ptprt protein_coding Interval_56364 chr14 118099504 118099678 + 0 NA Intergenic Intergenic 33164 ENSMUSG00000022130.10 ENSMUSG00000022130 ENSMUST00000228085 Tgds protein_coding Interval_89952 chr2 26736003 26736201 + 0 NA Intergenic Intergenic -13021 ENSMUSG00000082951.1 ENSMUSG00000082951 ENSMUST00000119000 Gm13359 processed_pseudogene Interval_93819 chr2 77194851 77195221 + 0 NA intron (ENSMUSG00000042272.17, intron 13 of 17) protein_coding-intron (ENSMUSG00000042272.17, intron 13 of 17) 4391 ENSMUSG00000042272.17 ENSMUSG00000042272 ENSMUST00000139021 Sestd1 protein_coding Interval_17154 chr10 72739672 72739861 + 0 NA Intergenic Intergenic 21835 ENSMUSG00000112862.1 ENSMUSG00000112862 ENSMUST00000219599 Gm47094 processed_pseudogene Interval_9192 chr1 154982845 154983112 + 0 NA Intergenic Intergenic -48761 ENSMUSG00000101433.1 ENSMUSG00000101433 ENSMUST00000191584 Gm29441 processed_pseudogene Interval_98652 chr2 153850770 153851246 + 0 NA Intergenic Intergenic 20076 ENSMUSG00000027480.12 ENSMUSG00000027480 ENSMUST00000129011 Sun5 protein_coding Interval_53189 chr14 55021787 55022169 + 0 NA TTS (ENSMUSG00000022204.9) protein_coding-TTS (ENSMUSG00000022204.9) 1089 ENSMUSG00000022204.9 ENSMUSG00000022204 ENSMUST00000226258 Ngdn protein_coding Interval_67263 chr16 45063119 45063474 + 0 NA Intergenic Intergenic -30294 ENSMUSG00000022665.15 ENSMUSG00000022665 ENSMUST00000061050 Ccdc80 protein_coding Interval_83407 chr18 84944482 84946375 + 0 NA TTS (ENSMUSG00000024645.5) protein_coding-TTS (ENSMUSG00000024645.5) 6096 ENSMUSG00000024645.5 ENSMUSG00000024645 ENSMUST00000235591 Timm21 protein_coding Interval_79675 chr18 34450015 34452310 + 0 NA TTS (ENSMUSG00000036501.7) protein_coding-TTS (ENSMUSG00000036501.7) 42673 ENSMUSG00000014503.15 ENSMUSG00000014503 ENSMUST00000166156 Pkd2l2 protein_coding Interval_157630 chr8 71900347 71901465 + 0 NA Intergenic Intergenic -7729 ENSMUSG00000066880.15 ENSMUSG00000066880 ENSMUST00000119003 Zfp617 protein_coding Interval_127683 chr5 106613364 106613751 + 0 NA intron (ENSMUSG00000098302.1, intron 2 of 2) processed_transcript-intron (ENSMUSG00000098302.1, intron 2 of 2) 3265 ENSMUSG00000106142.1 ENSMUSG00000106142 ENSMUST00000197908 Gm17937 processed_pseudogene Interval_150338 chr7 109709271 109710035 + 0 NA TTS (ENSMUSG00000031023.5) protein_coding-TTS (ENSMUSG00000031023.5) 820 ENSMUSG00000031023.5 ENSMUSG00000031023 ENSMUST00000147497 Akip1 protein_coding Interval_144767 chr7 28118015 28118245 + 0 NA intron (ENSMUSG00000047730.17, intron 2 of 3) protein_coding-intron (ENSMUSG00000047730.17, intron 18 of 19) 4303 ENSMUSG00000047730.17 ENSMUSG00000047730 ENSMUST00000131090 Fcgbp protein_coding Interval_120284 chr4 145188840 145189094 + 0 NA intron (ENSMUSG00000020220.16, intron 2 of 4) protein_coding-intron (ENSMUSG00000020220.16, intron 1 of 67) -33481 ENSMUSG00000020220.16 ENSMUSG00000020220 ENSMUST00000132700 Vps13d protein_coding Interval_98658 chr2 153929811 153930632 + 0 NA intron (ENSMUSG00000068008.8, intron 12 of 15) protein_coding-intron (ENSMUSG00000068008.8, intron 12 of 15) -8000 ENSMUSG00000074665.11 ENSMUSG00000074665 ENSMUST00000099181 Bpifb4 protein_coding Interval_121281 chr4 154693586 154694685 + 0 NA Intergenic Intergenic -26268 ENSMUSG00000051276.4 ENSMUSG00000051276 ENSMUST00000060062 Actrt2 protein_coding Interval_145232 chr7 30809903 30811960 + 0 NA Intergenic Intergenic 10046 ENSMUSG00000051314.11 ENSMUSG00000051314 ENSMUST00000186059 Ffar2 protein_coding Interval_34265 chr11 121819759 121820910 + 0 NA Intergenic Intergenic 2926 ENSMUSG00000099690.1 ENSMUSG00000099690 ENSMUST00000185741 Gm29513 lincRNA Interval_12822 chr10 5846924 5847350 + 0 NA intron (ENSMUSG00000019775.17, intron 2 of 4) protein_coding-intron (ENSMUSG00000019775.17, intron 4 of 6) -31382 ENSMUSG00000019774.8 ENSMUSG00000019774 ENSMUST00000145687 Mtrf1l protein_coding Interval_149914 chr7 102541242 102541481 + 0 NA promoter-TSS (ENSMUSG00000073978.8) protein_coding-promoter-TSS (ENSMUSG00000073978.8) 465 ENSMUSG00000073978.8 ENSMUSG00000073978 ENSMUST00000098228 Olfr548-ps1 protein_coding Interval_63538 chr15 101872259 101872434 + 0 NA Intergenic Intergenic -2750 ENSMUSG00000067594.6 ENSMUSG00000067594 ENSMUST00000229995 Krt77 protein_coding Interval_99916 chr2 165790993 165792735 + 0 NA intron (ENSMUSG00000039671.18, intron 21 of 22) protein_coding-intron (ENSMUSG00000039671.18, intron 22 of 23) -65820 ENSMUSG00000085274.1 ENSMUSG00000085274 ENSMUST00000155786 BC046401 processed_transcript Interval_70146 chr17 5801047 5801471 + 0 NA exon (ENSMUSG00000096965.7, exon 2 of 3) lincRNA-exon (ENSMUSG00000096965.7, exon 2 of 3) 1768 ENSMUSG00000096965.7 ENSMUSG00000096965 ENSMUST00000181392 3300005D01Rik lincRNA Interval_36014 chr12 33291499 33291942 + 0 NA intron (ENSMUSG00000020564.17, intron 3 of 12) protein_coding-intron (ENSMUSG00000020564.17, intron 3 of 11) -22680 ENSMUSG00000020564.17 ENSMUSG00000020564 ENSMUST00000142184 Atxn7l1 protein_coding Interval_134188 chr6 22451030 22452623 + 0 NA Intergenic Intergenic -107913 ENSMUSG00000029672.16 ENSMUSG00000029672 ENSMUST00000168965 Fam3c protein_coding Interval_120723 chr4 150273909 150275134 + 0 NA Intergenic Intergenic 27061 ENSMUSG00000063524.13 ENSMUSG00000063524 ENSMUST00000136310 Eno1 protein_coding Interval_84534 chr19 12463481 12464706 + 0 NA exon (ENSMUSG00000046805.10, exon 2 of 2) protein_coding-exon (ENSMUSG00000046805.10, exon 2 of 2) 3314 ENSMUSG00000046805.10 ENSMUSG00000046805 ENSMUST00000081035 Mpeg1 protein_coding Interval_77336 chr17 88047202 88047431 + 0 NA intron (ENSMUSG00000005371.15, intron 1 of 22) protein_coding-intron (ENSMUSG00000005371.15, intron 1 of 22) 17927 ENSMUSG00000005371.15 ENSMUSG00000005371 ENSMUST00000235056 Fbxo11 protein_coding Interval_115793 chr4 104465750 104466015 + 0 NA intron (ENSMUSG00000028519.16, intron 1 of 14) protein_coding-intron (ENSMUSG00000028519.16, intron 3 of 9) -139414 ENSMUSG00000028519.16 ENSMUSG00000028519 ENSMUST00000149672 Dab1 protein_coding Interval_25033 chr11 43411554 43413216 + 0 NA Intergenic Intergenic 13596 ENSMUSG00000020415.16 ENSMUSG00000020415 ENSMUST00000148130 Pttg1 protein_coding Interval_10016 chr1 165091639 165092414 + 0 NA promoter-TSS (ENSMUSG00000102408.1) lincRNA-promoter-TSS (ENSMUSG00000102408.1) -98 ENSMUSG00000102408.1 ENSMUSG00000102408 ENSMUST00000195635 4930568G15Rik lincRNA Interval_48640 chr13 100785693 100787559 + 0 NA promoter-TSS (ENSMUSG00000041431.16) protein_coding-promoter-TSS (ENSMUSG00000041431.16) -224 ENSMUSG00000041431.16 ENSMUSG00000041431 ENSMUST00000142056 Ccnb1 protein_coding Interval_76657 chr17 83231191 83231992 + 0 NA Intergenic Intergenic 16299 ENSMUSG00000024247.14 ENSMUSG00000024247 ENSMUST00000168118 Pkdcc protein_coding Interval_164206 chr9 32518851 32519950 + 0 NA intron (ENSMUSG00000016087.13, intron 1 of 6) protein_coding-intron (ENSMUSG00000016087.13, intron 1 of 8) 7558 ENSMUSG00000102153.1 ENSMUSG00000102153 ENSMUST00000194812 Gm37474 TEC Interval_66765 chr16 37340895 37341879 + 0 NA intron (ENSMUSG00000022829.14, intron 3 of 4) protein_coding-intron (ENSMUSG00000022829.14, intron 3 of 22) -11365 ENSMUSG00000116854.1 ENSMUSG00000116854 ENSMUST00000232416 Gm49567 processed_pseudogene Interval_135044 chr6 34927233 34927860 + 0 NA intron (ENSMUSG00000029848.11, intron 1 of 7) protein_coding-intron (ENSMUSG00000029848.11, intron 2 of 9) 6542 ENSMUSG00000029848.11 ENSMUSG00000029848 ENSMUST00000114997 Stra8 protein_coding Interval_72022 chr17 27611223 27611618 + 0 NA intron (ENSMUSG00000117338.1, intron 5 of 8) protein_coding-intron (ENSMUSG00000024213.14, intron 1 of 4) -12077 ENSMUSG00000116571.1 ENSMUSG00000116571 ENSMUST00000231767 Gm49741 bidirectional_promoter_lncRNA Interval_93117 chr2 70351460 70351660 + 0 NA intron (ENSMUSG00000042064.13, intron 31 of 33) protein_coding-intron (ENSMUSG00000042064.13, intron 32 of 34) -107422 ENSMUSG00000047965.9 ENSMUSG00000047965 ENSMUST00000140507 Rpl9-ps7 processed_pseudogene Interval_111256 chr4 16072235 16072678 + 0 NA Intergenic Intergenic 48432 ENSMUSG00000081679.1 ENSMUSG00000081679 ENSMUST00000117437 Gm11874 processed_pseudogene Interval_156115 chr8 44934868 44936079 + 0 NA promoter-TSS (ENSMUSG00000070047.14) protein_coding-promoter-TSS (ENSMUSG00000070047.14) -314 ENSMUSG00000110409.1 ENSMUSG00000110409 ENSMUST00000211534 Gm9908 bidirectional_promoter_lncRNA Interval_140159 chr6 114928201 114928741 + 0 NA intron (ENSMUSG00000030315.15, intron 2 of 5) protein_coding-intron (ENSMUSG00000030315.15, intron 2 of 4) -6655 ENSMUSG00000030315.15 ENSMUSG00000030315 ENSMUST00000204693 Vgll4 protein_coding Interval_88203 chr19 60635931 60636102 + 0 NA Intergenic Intergenic 24729 ENSMUSG00000117790.1 ENSMUSG00000117790 ENSMUST00000236155 Gm46652 lincRNA Interval_84556 chr19 12743972 12744479 + 0 NA Intergenic Intergenic 21407 ENSMUSG00000079415.2 ENSMUSG00000079415 ENSMUST00000112933 Cntf protein_coding Interval_50933 chr14 20845440 20846778 + 0 NA Intergenic Intergenic 9385 ENSMUSG00000021822.3 ENSMUSG00000021822 ENSMUST00000224141 Plau protein_coding Interval_37713 chr12 71326601 71326815 + 0 NA Intergenic Intergenic -5048 ENSMUSG00000087109.1 ENSMUSG00000087109 ENSMUST00000132822 4930474H06Rik processed_transcript Interval_75408 chr17 66412469 66412926 + 0 NA TTS (ENSMUSG00000093686.1) processed_pseudogene-TTS (ENSMUSG00000093686.1) 1287 ENSMUSG00000093686.1 ENSMUSG00000093686 ENSMUST00000177415 Gm4705 processed_pseudogene Interval_5242 chr1 86696917 86697196 + 0 NA Intergenic Intergenic -6772 ENSMUSG00000053333.15 ENSMUSG00000053333 ENSMUST00000186682 Dis3l2 protein_coding Interval_136027 chr6 50011384 50012163 + 0 NA Intergenic Intergenic -39413 ENSMUSG00000108071.1 ENSMUSG00000108071 ENSMUST00000204812 Gm3455 lincRNA Interval_142654 chr6 144739584 144740110 + 0 NA intron (ENSMUSG00000086282.1, intron 2 of 2) protein_coding-intron (ENSMUSG00000041540.16, intron 1 of 13) 16282 ENSMUSG00000086731.1 ENSMUSG00000086731 ENSMUST00000152192 Sox5os5 antisense Interval_88630 chr2 7826196 7826395 + 0 NA Intergenic Intergenic -44887 ENSMUSG00000085070.1 ENSMUSG00000085070 ENSMUST00000141649 Gm13211 lincRNA Interval_18538 chr10 87126361 87127512 + 0 NA intron (ENSMUSG00000047129.11, intron 3 of 4) protein_coding-intron (ENSMUSG00000047129.11, intron 3 of 5) -79043 ENSMUSG00000047129.11 ENSMUSG00000047129 ENSMUST00000189775 1700113H08Rik protein_coding Interval_1439 chr1 23394894 23395516 + 0 NA intron (ENSMUSG00000026158.11, intron 1 of 1) protein_coding-intron (ENSMUSG00000026158.11, intron 1 of 7) 2567 ENSMUSG00000026158.11 ENSMUSG00000026158 ENSMUST00000189537 Ogfrl1 protein_coding Interval_30131 chr11 89546118 89546616 + 0 NA intron (ENSMUSG00000047773.15, intron 4 of 21) protein_coding-intron (ENSMUSG00000047773.15, intron 2 of 16) 243644 ENSMUSG00000085798.1 ENSMUSG00000085798 ENSMUST00000140754 Gm2018 lincRNA Interval_62407 chr15 91982748 91983740 + 0 NA Intergenic Intergenic 22504 ENSMUSG00000116212.1 ENSMUSG00000116212 ENSMUST00000229625 Gm18979 processed_pseudogene Interval_67766 chr16 57010920 57011674 + 0 NA Intergenic Intergenic 29594 ENSMUSG00000116866.1 ENSMUSG00000116866 ENSMUST00000232096 Gm8938 processed_pseudogene Interval_35806 chr12 30102767 30103808 + 0 NA exon (ENSMUSG00000020673.14, exon 8 of 17) protein_coding-exon (ENSMUSG00000020673.14, exon 8 of 17) 28612 ENSMUSG00000020673.14 ENSMUSG00000020673 ENSMUST00000155263 Tpo protein_coding Interval_166551 chr9 60827140 60827323 + 0 NA intron (ENSMUSG00000052143.8, intron 1 of 1) protein_coding-intron (ENSMUSG00000034485.10, intron 1 of 18) 10968 ENSMUSG00000052143.8 ENSMUSG00000052143 ENSMUST00000063858 Gm9869 antisense Interval_44742 chr13 48154276 48154847 + 0 NA intron (ENSMUSG00000114457.1, intron 2 of 3) antisense-intron (ENSMUSG00000097622.2, intron 1 of 2) 82690 ENSMUSG00000114457.1 ENSMUSG00000114457 ENSMUST00000225626 Gm36346 lincRNA Interval_25989 chr11 53350307 53351999 + 0 NA intron (ENSMUSG00000049470.13, intron 1 of 20) protein_coding-intron (ENSMUSG00000049470.13, intron 1 of 20) -5476 ENSMUSG00000082263.1 ENSMUSG00000082263 ENSMUST00000122382 Gm11188 processed_pseudogene Interval_152690 chr7 136332760 136333469 + 0 NA exon (ENSMUSG00000109633.1, exon 5 of 5) lincRNA-exon (ENSMUSG00000109633.1, exon 5 of 5) 16301 ENSMUSG00000109633.1 ENSMUSG00000109633 ENSMUST00000209560 C230079O03Rik lincRNA Interval_36402 chr12 43730508 43730850 + 0 NA Intergenic Intergenic -12358 ENSMUSG00000065004.1 ENSMUSG00000065004 ENSMUST00000083070 Gm26326 snoRNA Interval_168838 chr9 87894108 87894941 + 0 NA Intergenic Intergenic -5937 ENSMUSG00000093937.1 ENSMUSG00000093937 ENSMUST00000180264 Gm25528 snoRNA Interval_3817 chr1 63238971 63239954 + 0 NA Intergenic Intergenic 9037 ENSMUSG00000102536.1 ENSMUSG00000102536 ENSMUST00000194370 1700039I01Rik TEC Interval_77683 chr17 94205043 94205301 + 0 NA Intergenic Intergenic -72901 ENSMUSG00000117543.1 ENSMUSG00000117543 ENSMUST00000235005 Gm50004 processed_pseudogene Interval_148455 chr7 81344775 81345861 + 0 NA promoter-TSS (ENSMUSG00000061787.15) protein_coding-promoter-TSS (ENSMUSG00000061787.15) -91 ENSMUSG00000061787.15 ENSMUSG00000061787 ENSMUST00000138936 Rps17 protein_coding Interval_167224 chr9 66292265 66292590 + 0 NA Intergenic Intergenic -58023 ENSMUSG00000038664.16 ENSMUSG00000038664 ENSMUST00000130854 Herc1 protein_coding Interval_7927 chr1 134617629 134617970 + 0 NA exon (ENSMUSG00000042207.17, exon 19 of 27) protein_coding-exon (ENSMUSG00000042207.17, exon 19 of 27) -5001 ENSMUSG00000042207.17 ENSMUSG00000042207 ENSMUST00000191572 Kdm5b protein_coding Interval_128549 chr5 113960165 113960549 + 0 NA intron (ENSMUSG00000042121.16, intron 6 of 13) protein_coding-intron (ENSMUSG00000042121.16, intron 6 of 13) 6399 ENSMUSG00000042121.16 ENSMUSG00000042121 ENSMUST00000162322 Ssh1 protein_coding Interval_128932 chr5 116157882 116158385 + 0 NA intron (ENSMUSG00000043913.14, intron 6 of 13) protein_coding-intron (ENSMUSG00000043913.14, intron 6 of 13) 34519 ENSMUSG00000086655.1 ENSMUSG00000086655 ENSMUST00000127792 C330018A13Rik antisense Interval_23740 chr11 25660789 25661337 + 0 NA intron (ENSMUSG00000032985.15, intron 2 of 5) protein_coding-intron (ENSMUSG00000032985.15, intron 4 of 6) -24077 ENSMUSG00000064761.1 ENSMUSG00000064761 ENSMUST00000082827 Gm23514 snoRNA Interval_18631 chr10 88700732 88701825 + 0 NA Intergenic Intergenic -3317 ENSMUSG00000111919.1 ENSMUSG00000111919 ENSMUST00000217894 Gm46192 processed_pseudogene Interval_118886 chr4 134263096 134263600 + 0 NA Intergenic Intergenic -10325 ENSMUSG00000050105.5 ENSMUSG00000050105 ENSMUST00000138366 Grrp1 protein_coding Interval_83388 chr18 84807524 84808237 + 0 NA intron (ENSMUSG00000117781.1, intron 10 of 10) protein_coding-intron (ENSMUSG00000117781.1, intron 10 of 10) -14122 ENSMUSG00000088070.1 ENSMUSG00000088070 ENSMUST00000157445 Gm22819 misc_RNA Interval_8905 chr1 151962046 151962380 + 0 NA intron (ENSMUSG00000032666.16, intron 3 of 6) protein_coding-intron (ENSMUSG00000032666.16, intron 3 of 5) 86794 ENSMUSG00000100685.1 ENSMUSG00000100685 ENSMUST00000187716 Gm28610 antisense Interval_33308 chr11 115836312 115837129 + 0 NA intron (ENSMUSG00000020782.18, intron 2 of 25) protein_coding-intron (ENSMUSG00000020782.18, intron 2 of 25) 12662 ENSMUSG00000020782.18 ENSMUSG00000020782 ENSMUST00000132999 Llgl2 protein_coding Interval_44933 chr13 50319823 50320044 + 0 NA Intergenic Intergenic 51957 ENSMUSG00000114035.1 ENSMUSG00000114035 ENSMUST00000222366 Gm31126 lincRNA Interval_130675 chr5 129656593 129656804 + 0 NA exon (ENSMUSG00000051034.7, exon 3 of 3) protein_coding-exon (ENSMUSG00000051034.7, exon 3 of 3) 13401 ENSMUSG00000051034.7 ENSMUSG00000051034 ENSMUST00000049778 Zfp11 protein_coding Interval_78486 chr18 13591599 13591862 + 0 NA intron (ENSMUSG00000117608.1, intron 2 of 5) lincRNA-intron (ENSMUSG00000117608.1, intron 2 of 5) 9670 ENSMUSG00000117608.1 ENSMUSG00000117608 ENSMUST00000234112 AC103362.1 lincRNA Interval_93462 chr2 73255884 73256520 + 0 NA Intergenic Intergenic -15764 ENSMUSG00000068859.5 ENSMUSG00000068859 ENSMUST00000147133 Sp9 protein_coding Interval_151870 chr7 127227671 127227866 + 0 NA intron (ENSMUSG00000000486.13, intron 1 of 5) protein_coding-intron (ENSMUSG00000000486.13, intron 1 of 5) 5362 ENSMUSG00000000486.13 ENSMUSG00000000486 ENSMUST00000205570 Septin1 protein_coding Interval_73505 chr17 38246518 38246805 + 0 NA Intergenic Intergenic -14374 ENSMUSG00000057443.13 ENSMUSG00000057443 ENSMUST00000071871 Olfr138 protein_coding Interval_24856 chr11 40476747 40478556 + 0 NA Intergenic Intergenic -1974 ENSMUSG00000085588.1 ENSMUSG00000085588 ENSMUST00000123904 3110004A20Rik lincRNA Interval_101218 chr2 179556871 179557106 + 0 NA intron (ENSMUSG00000000305.12, intron 2 of 2) protein_coding-intron (ENSMUSG00000000305.12, intron 2 of 15) 56579 ENSMUSG00000083410.1 ENSMUSG00000083410 ENSMUST00000120800 Gm14300 processed_pseudogene Interval_114078 chr4 63170657 63171851 + 0 NA intron (ENSMUSG00000028357.13, intron 1 of 5) protein_coding-intron (ENSMUSG00000028357.13, intron 4 of 18) 875 ENSMUSG00000028357.13 ENSMUSG00000028357 ENSMUST00000154234 Kif12 protein_coding Interval_173969 chrX 118200040 118200450 + 0 NA Intergenic Intergenic 32742 ENSMUSG00000083031.1 ENSMUSG00000083031 ENSMUST00000121037 Gm14910 processed_pseudogene Interval_122371 chr5 21761126 21761356 + 0 NA intron (ENSMUSG00000029014.14, intron 12 of 15) protein_coding-intron (ENSMUSG00000029014.14, intron 13 of 16) 4722 ENSMUSG00000029017.13 ENSMUSG00000029017 ENSMUST00000137334 Pmpcb protein_coding Interval_124365 chr5 44753943 44755173 + 0 NA promoter-TSS (ENSMUSG00000106603.1) TEC-promoter-TSS (ENSMUSG00000106603.1) -801 ENSMUSG00000106603.1 ENSMUSG00000106603 ENSMUST00000196551 Gm43509 TEC Interval_89255 chr2 18494821 18495174 + 0 NA Intergenic Intergenic -73129 ENSMUSG00000081181.1 ENSMUSG00000081181 ENSMUST00000120891 Gm13353 processed_pseudogene Interval_7303 chr1 128653608 128654713 + 0 NA Intergenic Intergenic -61867 ENSMUSG00000045382.6 ENSMUSG00000045382 ENSMUST00000142893 Cxcr4 protein_coding Interval_113070 chr4 47480975 47482713 + 0 NA intron (ENSMUSG00000053317.11, intron 3 of 3) protein_coding-intron (ENSMUSG00000053317.11, intron 3 of 3) 7080 ENSMUSG00000053317.11 ENSMUSG00000053317 ENSMUST00000136685 Sec61b protein_coding Interval_116435 chr4 111950862 111951088 + 0 NA TTS (ENSMUSG00000078599.9) protein_coding-TTS (ENSMUSG00000078599.9) -21952 ENSMUSG00000049214.13 ENSMUSG00000049214 ENSMUST00000142162 Skint7 protein_coding Interval_108707 chr3 130574782 130575281 + 0 NA intron (ENSMUSG00000058897.18, intron 29 of 37) protein_coding-intron (ENSMUSG00000058897.18, intron 30 of 37) 13089 ENSMUSG00000105760.1 ENSMUSG00000105760 ENSMUST00000196901 Gm43211 TEC Interval_138271 chr6 86754413 86754909 + 0 NA intron (ENSMUSG00000029994.17, intron 4 of 10) protein_coding-intron (ENSMUSG00000029994.17, intron 5 of 12) 21172 ENSMUSG00000107961.1 ENSMUSG00000107961 ENSMUST00000204551 Gm44036 lincRNA Interval_106549 chr3 97165300 97165620 + 0 NA intron (ENSMUSG00000028093.15, intron 1 of 3) protein_coding-intron (ENSMUSG00000028093.15, intron 1 of 9) 6364 ENSMUSG00000028093.15 ENSMUSG00000028093 ENSMUST00000198329 Acp6 protein_coding Interval_61589 chr15 82814578 82815581 + 0 NA intron (ENSMUSG00000041852.15, intron 4 of 5) protein_coding-intron (ENSMUSG00000041852.15, intron 4 of 4) -11115 ENSMUSG00000116280.1 ENSMUSG00000116280 ENSMUST00000229945 Gm49435 unprocessed_pseudogene Interval_96195 chr2 120464041 120464239 + 0 NA exon (ENSMUSG00000079110.12, exon 1 of 24) protein_coding-exon (ENSMUSG00000079110.12, exon 1 of 24) 487 ENSMUSG00000079110.12 ENSMUSG00000079110 ENSMUST00000151342 Capn3 protein_coding Interval_77450 chr17 88898521 88900164 + 0 NA Intergenic Intergenic -42720 ENSMUSG00000117566.1 ENSMUSG00000117566 ENSMUST00000234561 Gm9407 processed_pseudogene Interval_96777 chr2 128134004 128134217 + 0 NA intron (ENSMUSG00000027381.16, intron 2 of 3) protein_coding-intron (ENSMUSG00000027381.16, intron 2 of 4) 8072 ENSMUSG00000027381.16 ENSMUSG00000027381 ENSMUST00000132201 Bcl2l11 protein_coding Interval_155063 chr8 26063343 26064594 + 0 NA exon (ENSMUSG00000109640.1, exon 1 of 1) TEC-exon (ENSMUSG00000109640.1, exon 1 of 1) 2084 ENSMUSG00000109640.1 ENSMUSG00000109640 ENSMUST00000210389 Gm45413 TEC Interval_88579 chr2 6350985 6351412 + 0 NA intron (ENSMUSG00000039046.15, intron 2 of 6) protein_coding-intron (ENSMUSG00000039046.15, intron 2 of 14) -28118 ENSMUSG00000118578.1 ENSMUSG00000118578 ENSMUST00000238876 AL845275.1 protein_coding Interval_84518 chr19 12067452 12068544 + 0 NA Intergenic Intergenic -5316 ENSMUSG00000067528.3 ENSMUSG00000067528 ENSMUST00000087830 Olfr1424 protein_coding Interval_136882 chr6 62709520 62710245 + 0 NA Intergenic Intergenic -46915 ENSMUSG00000108174.1 ENSMUSG00000108174 ENSMUST00000204470 Gm44092 processed_pseudogene Interval_75980 chr17 74109954 74110619 + 0 NA Intergenic Intergenic -10995 ENSMUSG00000117195.1 ENSMUSG00000117195 ENSMUST00000232871 Gm49881 processed_pseudogene Interval_70780 chr17 14447975 14448220 + 0 NA Intergenic Intergenic -1474 ENSMUSG00000116801.1 ENSMUSG00000116801 ENSMUST00000232609 Gm38551 lincRNA Interval_8167 chr1 136215595 136216526 + 0 NA promoter-TSS (ENSMUSG00000097315.1) antisense-promoter-TSS (ENSMUSG00000097315.1) -14 ENSMUSG00000097315.1 ENSMUSG00000097315 ENSMUST00000180496 Gm26568 antisense Interval_65919 chr16 30235938 30236772 + 0 NA Intergenic Intergenic -18797 ENSMUSG00000116938.1 ENSMUSG00000116938 ENSMUST00000231234 Gm49645 processed_pseudogene Interval_32564 chr11 108625805 108626071 + 0 NA intron (ENSMUSG00000020728.17, intron 2 of 2) protein_coding-intron (ENSMUSG00000020728.17, intron 21 of 27) 20711 ENSMUSG00000020728.17 ENSMUSG00000020728 ENSMUST00000132978 Cep112 protein_coding Interval_112175 chr4 35192345 35193600 + 0 NA exon (ENSMUSG00000028300.14, exon 10 of 10) protein_coding-exon (ENSMUSG00000028300.14, exon 10 of 10) 10003 ENSMUSG00000082762.1 ENSMUSG00000082762 ENSMUST00000121722 Gm12366 processed_pseudogene Interval_30347 chr11 93765235 93765989 + 0 NA Intergenic Intergenic 70530 ENSMUSG00000080872.1 ENSMUSG00000080872 ENSMUST00000122414 Gm11506 processed_pseudogene Interval_50482 chr14 13955238 13955503 + 0 NA promoter-TSS (ENSMUSG00000053453.9) protein_coding-promoter-TSS (ENSMUSG00000053453.9) 2261 ENSMUSG00000053453.9 ENSMUSG00000053453 ENSMUST00000226008 Thoc7 protein_coding Interval_110752 chr4 8065932 8066305 + 0 NA Intergenic Intergenic -52502 ENSMUSG00000083068.1 ENSMUSG00000083068 ENSMUST00000120050 Gm11800 processed_pseudogene Interval_67975 chr16 62345402 62345867 + 0 NA Intergenic Intergenic 138315 ENSMUSG00000118558.1 ENSMUSG00000118558 ENSMUST00000239089 CT010569.1 processed_pseudogene Interval_169144 chr9 94392876 94393561 + 0 NA Intergenic Intergenic 14908 ENSMUSG00000101949.1 ENSMUSG00000101949 ENSMUST00000187187 Gm5370 processed_pseudogene Interval_59063 chr15 42915052 42915297 + 0 NA Intergenic Intergenic -238425 ENSMUSG00000022309.9 ENSMUSG00000022309 ENSMUST00000227738 Angpt1 protein_coding Interval_25111 chr11 44184476 44184742 + 0 NA Intergenic Intergenic 82600 ENSMUSG00000086738.1 ENSMUSG00000086738 ENSMUST00000145584 Gm12154 lincRNA Interval_149492 chr7 99086802 99087766 + 0 NA intron (ENSMUSG00000035354.9, intron 6 of 11) protein_coding-intron (ENSMUSG00000035354.9, intron 5 of 14) -2948 ENSMUSG00000109492.1 ENSMUSG00000109492 ENSMUST00000208990 Gm33882 processed_pseudogene Interval_107088 chr3 103419138 103419575 + 0 NA Intergenic Intergenic -8081 ENSMUSG00000065789.1 ENSMUSG00000065789 ENSMUST00000083855 Gm25869 snRNA Interval_147679 chr7 71788530 71788893 + 0 NA Intergenic Intergenic 70874 ENSMUSG00000108982.1 ENSMUSG00000108982 ENSMUST00000208796 Gm17988 processed_pseudogene Interval_37855 chr12 72596344 72596537 + 0 NA intron (ENSMUSG00000109482.2, intron 4 of 5) protein_coding-intron (ENSMUSG00000109482.2, intron 4 of 5) -24335 ENSMUSG00000113143.1 ENSMUSG00000113143 ENSMUST00000222501 Ly6e-ps1 processed_pseudogene Interval_54140 chr14 65651402 65651958 + 0 NA Intergenic Intergenic -24797 ENSMUSG00000022032.14 ENSMUSG00000022032 ENSMUST00000154373 Scara5 protein_coding Interval_155029 chr8 25813305 25814114 + 0 NA exon (ENSMUSG00000031574.8, exon 7 of 7) protein_coding-exon (ENSMUSG00000031574.8, exon 7 of 7) 7154 ENSMUSG00000031574.8 ENSMUSG00000031574 ENSMUST00000033979 Star protein_coding Interval_1170 chr1 16534033 16534259 + 0 NA Intergenic Intergenic -14840 ENSMUSG00000025920.19 ENSMUSG00000025920 ENSMUST00000144138 Stau2 protein_coding Interval_153840 chr8 9507408 9508845 + 0 NA intron (ENSMUSG00000079157.4, intron 3 of 3) protein_coding-intron (ENSMUSG00000079157.4, intron 1 of 2) 49034 ENSMUSG00000109551.1 ENSMUSG00000109551 ENSMUST00000208065 4930435N07Rik TEC Interval_29734 chr11 86467357 86467578 + 0 NA Intergenic Intergenic -17263 ENSMUSG00000020521.7 ENSMUSG00000020521 ENSMUST00000131246 Rnft1 protein_coding Interval_166955 chr9 64135221 64135553 + 0 NA intron (ENSMUSG00000032401.15, intron 9 of 9) protein_coding-intron (ENSMUSG00000032401.15, intron 13 of 13) 18215 ENSMUSG00000032401.15 ENSMUSG00000032401 ENSMUST00000132018 Lctl protein_coding Interval_44978 chr13 51121440 51123142 + 0 NA intron (ENSMUSG00000021395.11, intron 1 of 5) protein_coding-intron (ENSMUSG00000021395.11, intron 1 of 5) -12028 ENSMUSG00000021395.11 ENSMUSG00000021395 ENSMUST00000223152 Spin1 protein_coding Interval_64461 chr16 11596612 11597047 + 0 NA intron (ENSMUSG00000071669.14, intron 15 of 20) protein_coding-intron (ENSMUSG00000071669.14, intron 8 of 13) 95028 ENSMUSG00000085732.1 ENSMUSG00000085732 ENSMUST00000154314 Gm4279 antisense Interval_14643 chr10 37555775 37556598 + 0 NA Intergenic Intergenic -103506 ENSMUSG00000111549.1 ENSMUSG00000111549 ENSMUST00000215235 Gm48172 processed_pseudogene Interval_48072 chr13 95777334 95777600 + 0 NA intron (ENSMUSG00000021676.10, intron 2 of 6) protein_coding-intron (ENSMUSG00000021676.10, intron 2 of 35) 40884 ENSMUSG00000118436.1 ENSMUSG00000118436 ENSMUST00000238548 Gm32880 antisense Interval_64196 chr16 9016091 9017043 + 0 NA Intergenic Intergenic -20171 ENSMUSG00000116352.1 ENSMUSG00000116352 ENSMUST00000229458 Gm49447 processed_pseudogene Interval_75217 chr17 64788402 64788980 + 0 NA Intergenic Intergenic 21580 ENSMUSG00000117105.1 ENSMUSG00000117105 ENSMUST00000233348 Dreh lincRNA Interval_62250 chr15 89169176 89170033 + 0 NA intron (ENSMUSG00000036606.17, intron 3 of 37) protein_coding-intron (ENSMUSG00000036606.17, intron 1 of 35) -6696 ENSMUSG00000106328.1 ENSMUSG00000106328 ENSMUST00000197760 Mir7118 miRNA Interval_145718 chr7 37697772 37698013 + 0 NA intron (ENSMUSG00000043456.17, intron 2 of 3) protein_coding-intron (ENSMUSG00000043456.17, intron 2 of 5) 28093 ENSMUSG00000093540.2 ENSMUSG00000093540 ENSMUST00000175854 4930505M18Rik antisense Interval_36486 chr12 45929598 45929963 + 0 NA Intergenic Intergenic -54563 ENSMUSG00000064800.1 ENSMUSG00000064800 ENSMUST00000082866 Gm24948 snoRNA Interval_162285 chr8 126755949 126756754 + 0 NA exon (ENSMUSG00000110626.1, exon 2 of 2) lincRNA-exon (ENSMUSG00000110626.1, exon 2 of 2) 1983 ENSMUSG00000110626.1 ENSMUSG00000110626 ENSMUST00000212695 Gm45805 lincRNA Interval_74852 chr17 56872469 56872786 + 0 NA intron (ENSMUSG00000024207.8, intron 2 of 14) protein_coding-intron (ENSMUSG00000024207.8, intron 2 of 14) 1820 ENSMUSG00000024207.8 ENSMUSG00000024207 ENSMUST00000043062 Acsbg2 protein_coding Interval_68342 chr16 73646814 73647619 + 0 NA Intergenic Intergenic -43164 ENSMUSG00000116642.1 ENSMUSG00000116642 ENSMUST00000231958 Gm18168 unprocessed_pseudogene Interval_138040 chr6 84539650 84539885 + 0 NA Intergenic Intergenic 3891 ENSMUSG00000107926.1 ENSMUSG00000107926 ENSMUST00000204799 4930504D19Rik lincRNA Interval_89672 chr2 24441223 24443730 + 0 NA promoter-TSS (ENSMUSG00000085057.7) processed_transcript-promoter-TSS (ENSMUSG00000085057.7) -373 ENSMUSG00000085057.7 ENSMUSG00000085057 ENSMUST00000187034 Gm13415 processed_transcript Interval_134959 chr6 34135335 34135949 + 0 NA Intergenic Intergenic -16287 ENSMUSG00000087356.1 ENSMUSG00000087356 ENSMUST00000126498 Gm13856 antisense Interval_123902 chr5 36390821 36391245 + 0 NA intron (ENSMUSG00000029093.14, intron 1 of 7) protein_coding-intron (ENSMUSG00000029093.14, intron 1 of 26) -25115 ENSMUSG00000029093.14 ENSMUSG00000029093 ENSMUST00000141508 Sorcs2 protein_coding Interval_80487 chr18 42637810 42638051 + 0 NA intron (ENSMUSG00000024500.20, intron 8 of 8) protein_coding-intron (ENSMUSG00000024500.20, intron 8 of 8) -15471 ENSMUSG00000117926.1 ENSMUSG00000117926 ENSMUST00000236808 C030004G16Rik lincRNA Interval_126932 chr5 97399689 97401196 + 0 NA intron (ENSMUSG00000097516.7, intron 2 of 3) lincRNA-intron (ENSMUSG00000097516.7, intron 2 of 3) 8025 ENSMUSG00000097516.7 ENSMUSG00000097516 ENSMUST00000180634 4930467D21Rik lincRNA Interval_34782 chr12 11149059 11150962 + 0 NA intron (ENSMUSG00000043673.11, intron 1 of 2) protein_coding-intron (ENSMUSG00000043673.11, intron 1 of 2) 1046 ENSMUSG00000043673.11 ENSMUSG00000043673 ENSMUST00000164495 Kcns3 protein_coding Interval_100423 chr2 168929382 168930220 + 0 NA intron (ENSMUSG00000027551.15, intron 5 of 5) protein_coding-intron (ENSMUSG00000027551.15, intron 5 of 5) 25465 ENSMUSG00000027551.15 ENSMUSG00000027551 ENSMUST00000136242 Zfp64 protein_coding Interval_82252 chr18 69653194 69653933 + 0 NA intron (ENSMUSG00000053477.17, intron 6 of 7) protein_coding-intron (ENSMUSG00000053477.17, intron 14 of 20) 101600 ENSMUSG00000088659.1 ENSMUSG00000088659 ENSMUST00000158034 Gm24845 rRNA Interval_166240 chr9 57728140 57728577 + 0 NA intron (ENSMUSG00000038957.13, intron 3 of 5) protein_coding-intron (ENSMUSG00000038957.13, intron 4 of 6) 19791 ENSMUSG00000038957.13 ENSMUSG00000038957 ENSMUST00000142807 Edc3 protein_coding Interval_169683 chr9 100357900 100358249 + 0 NA Intergenic Intergenic 33777 ENSMUSG00000111258.1 ENSMUSG00000111258 ENSMUST00000213192 Gm34397 lincRNA Interval_112986 chr4 46633779 46633971 + 0 NA intron (ENSMUSG00000039813.14, intron 3 of 3) protein_coding-intron (ENSMUSG00000039813.14, intron 3 of 12) 16334 ENSMUSG00000039813.14 ENSMUSG00000039813 ENSMUST00000107750 Tbc1d2 protein_coding Interval_10602 chr1 172155328 172155684 + 0 NA intron (ENSMUSG00000026554.15, intron 2 of 9) protein_coding-intron (ENSMUSG00000026554.15, intron 1 of 12) 7417 ENSMUSG00000026554.15 ENSMUSG00000026554 ENSMUST00000191891 Dcaf8 protein_coding Interval_56840 chr14 122373517 122373699 + 0 NA intron (ENSMUSG00000025545.10, intron 3 of 7) protein_coding-intron (ENSMUSG00000025545.10, intron 3 of 7) 14552 ENSMUSG00000095311.1 ENSMUSG00000095311 ENSMUST00000175481 Gm25464 snRNA Interval_96222 chr2 120606088 120606624 + 0 NA intron (ENSMUSG00000027286.16, intron 1 of 2) protein_coding-intron (ENSMUSG00000027286.16, intron 4 of 5) 2946 ENSMUSG00000027286.16 ENSMUSG00000027286 ENSMUST00000141932 Lrrc57 protein_coding Interval_86974 chr19 45281806 45283770 + 0 NA Intergenic Intergenic 21395 ENSMUSG00000100417.2 ENSMUSG00000100417 ENSMUST00000235311 Gm28578 lincRNA Interval_101249 chr2 179842963 179843365 + 0 NA intron (ENSMUSG00000000305.12, intron 5 of 5) protein_coding-intron (ENSMUSG00000000305.12, intron 5 of 15) 66001 ENSMUSG00000000305.12 ENSMUSG00000000305 ENSMUST00000098996 Cdh4 protein_coding Interval_170692 chr9 110124143 110124559 + 0 NA intron (ENSMUSG00000032481.17, intron 1 of 3) protein_coding-intron (ENSMUSG00000032481.17, intron 1 of 3) -2535 ENSMUSG00000105187.1 ENSMUSG00000105187 ENSMUST00000196828 Gm23377 snoRNA Interval_164915 chr9 43060994 43061262 + 0 NA intron (ENSMUSG00000059495.14, intron 1 of 4) protein_coding-intron (ENSMUSG00000059495.14, intron 1 of 41) -34468 ENSMUSG00000059495.14 ENSMUSG00000059495 ENSMUST00000214175 Arhgef12 protein_coding Interval_149462 chr7 98778731 98781015 + 0 NA Intergenic Intergenic -44792 ENSMUSG00000108988.1 ENSMUSG00000108988 ENSMUST00000208941 Gm44934 lincRNA Interval_82711 chr18 76119039 76120002 + 0 NA intron (ENSMUSG00000044646.15, intron 1 of 2) protein_coding-intron (ENSMUSG00000044646.15, intron 3 of 4) -21049 ENSMUSG00000117797.1 ENSMUSG00000117797 ENSMUST00000236092 2900057B20Rik antisense Interval_87409 chr19 49242132 49243310 + 0 NA Intergenic Intergenic 152048 ENSMUSG00000118111.1 ENSMUSG00000118111 ENSMUST00000236912 Gm50442 lincRNA Interval_163676 chr9 23998678 23999084 + 0 NA Intergenic Intergenic 19278 ENSMUSG00000111477.1 ENSMUSG00000111477 ENSMUST00000215011 Gm47668 processed_pseudogene Interval_96791 chr2 128278629 128278946 + 0 NA intron (ENSMUSG00000074813.14, intron 2 of 3) lincRNA-intron (ENSMUSG00000074813.14, intron 2 of 4) 88800 ENSMUSG00000085750.1 ENSMUSG00000085750 ENSMUST00000152439 Gm14009 lincRNA Interval_42024 chr13 6614221 6614449 + 0 NA TTS (ENSMUSG00000021196.14) protein_coding-TTS (ENSMUSG00000021196.14) -16456 ENSMUSG00000021196.14 ENSMUSG00000021196 ENSMUST00000136585 Pfkp protein_coding Interval_25291 chr11 46147651 46147927 + 0 NA promoter-TSS (ENSMUSG00000086998.1) antisense-promoter-TSS (ENSMUSG00000086998.1) -673 ENSMUSG00000086998.1 ENSMUSG00000086998 ENSMUST00000144915 Gm16033 antisense Interval_112187 chr4 35310250 35311166 + 0 NA Intergenic Intergenic -84533 ENSMUSG00000028300.14 ENSMUSG00000028300 ENSMUST00000149138 C9orf72 protein_coding Interval_17539 chr10 77602937 77603374 + 0 NA Intergenic Intergenic -3042 ENSMUSG00000112241.1 ENSMUSG00000112241 ENSMUST00000174113 Gm49325 protein_coding Interval_98069 chr2 147407670 147408127 + 0 NA Intergenic Intergenic -4636 ENSMUSG00000083126.1 ENSMUSG00000083126 ENSMUST00000118814 Gm14109 processed_pseudogene Interval_133352 chr6 3584722 3585259 + 0 NA exon (ENSMUSG00000107094.1, exon 1 of 1) TEC-exon (ENSMUSG00000107094.1, exon 1 of 1) 1176 ENSMUSG00000107094.1 ENSMUSG00000107094 ENSMUST00000202850 Gm43294 TEC Interval_72416 chr17 29685690 29686061 + 0 NA promoter-TSS (ENSMUSG00000024019.18) protein_coding-promoter-TSS (ENSMUSG00000024019.18) 25261 ENSMUSG00000024019.18 ENSMUSG00000024019 ENSMUST00000234666 Cmtr1 protein_coding Interval_50219 chr14 10452987 10453975 + 0 NA promoter-TSS (ENSMUSG00000060579.13) protein_coding-promoter-TSS (ENSMUSG00000060579.13) -25193 ENSMUSG00000065328.1 ENSMUSG00000065328 ENSMUST00000083394 Gm22053 snoRNA Interval_120351 chr4 148065779 148066528 + 0 NA Intergenic Intergenic 2339 ENSMUSG00000094320.1 ENSMUSG00000094320 ENSMUST00000117487 Chchd2-ps processed_pseudogene Interval_8616 chr1 143932293 143932557 + 0 NA Intergenic Intergenic 71607 ENSMUSG00000026360.9 ENSMUSG00000026360 ENSMUST00000134817 Rgs2 protein_coding Interval_105360 chr3 85482788 85483123 + 0 NA intron (ENSMUSG00000102805.5, intron 3 of 9) protein_coding-intron (ENSMUSG00000102805.5, intron 3 of 9) 15578 ENSMUSG00000080424.1 ENSMUSG00000080424 ENSMUST00000116774 Mir466k miRNA Interval_100017 chr2 166551754 166554227 + 0 NA Intergenic Intergenic -43816 ENSMUSG00000085682.2 ENSMUSG00000085682 ENSMUST00000123480 Gm14267 transcribed_processed_pseudogene Interval_93278 chr2 71647565 71648189 + 0 NA Intergenic Intergenic -71540 ENSMUSG00000064263.6 ENSMUSG00000064263 ENSMUST00000079720 Platr26 lincRNA Interval_153731 chr8 5475587 5476798 + 0 NA Intergenic Intergenic -35202 ENSMUSG00000109313.1 ENSMUSG00000109313 ENSMUST00000208141 Gm44693 lincRNA Interval_136585 chr6 56126388 56126858 + 0 NA intron (ENSMUSG00000004347.17, intron 17 of 19) protein_coding-intron (ENSMUSG00000004347.17, intron 15 of 18) 46408 ENSMUSG00000106152.1 ENSMUSG00000106152 ENSMUST00000198921 Gm44413 miRNA Interval_137784 chr6 82428339 82429326 + 0 NA intron (ENSMUSG00000030043.11, intron 1 of 4) protein_coding-intron (ENSMUSG00000030043.11, intron 2 of 5) 26498 ENSMUSG00000030043.11 ENSMUSG00000030043 ENSMUST00000203775 Tacr1 protein_coding Interval_90861 chr2 33024105 33025834 + 0 NA intron (ENSMUSG00000038860.15, intron 4 of 7) protein_coding-intron (ENSMUSG00000038860.15, intron 11 of 27) 9815 ENSMUSG00000038860.15 ENSMUSG00000038860 ENSMUST00000124000 Garnl3 protein_coding Interval_112870 chr4 45672303 45673606 + 0 NA Intergenic Intergenic -10635 ENSMUSG00000073860.12 ENSMUSG00000073860 ENSMUST00000146622 Gm829 lincRNA Interval_170534 chr9 108566525 108568325 + 0 NA promoter-TSS (ENSMUSG00000070283.4) protein_coding-promoter-TSS (ENSMUSG00000070283.4) -468 ENSMUSG00000103103.1 ENSMUSG00000103103 ENSMUST00000194104 4833445I07Rik lincRNA Interval_145529 chr7 35388370 35389362 + 0 NA intron (ENSMUSG00000030494.13, intron 14 of 15) protein_coding-intron (ENSMUSG00000030494.13, intron 14 of 14) 6301 ENSMUSG00000030494.13 ENSMUSG00000030494 ENSMUST00000187997 Rhpn2 protein_coding Interval_22476 chr11 10885536 10885770 + 0 NA Intergenic Intergenic -230832 ENSMUSG00000050830.17 ENSMUSG00000050830 ENSMUST00000154155 Vwc2 protein_coding Interval_97280 chr2 132906467 132907223 + 0 NA intron (ENSMUSG00000027356.8, intron 13 of 13) protein_coding-intron (ENSMUSG00000027356.8, intron 14 of 14) -25954 ENSMUSG00000043110.2 ENSMUSG00000043110 ENSMUST00000049787 Lrrn4 protein_coding Interval_38547 chr12 80041771 80042016 + 0 NA intron (ENSMUSG00000111933.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000111933.1, intron 1 of 1) 39541 ENSMUSG00000111933.1 ENSMUSG00000111933 ENSMUST00000218323 Gm36660 lincRNA Interval_79644 chr18 34220526 34221748 + 0 NA promoter-TSS (ENSMUSG00000005871.15) protein_coding-promoter-TSS (ENSMUSG00000005871.15) 213 ENSMUSG00000005871.15 ENSMUSG00000005871 ENSMUST00000167136 Apc protein_coding Interval_86905 chr19 44746350 44747074 + 0 NA Intergenic Intergenic 6833 ENSMUSG00000117823.1 ENSMUSG00000117823 ENSMUST00000236025 Gm35610 lincRNA Interval_32103 chr11 105260618 105261145 + 0 NA intron (ENSMUSG00000020694.17, intron 4 of 6) protein_coding-intron (ENSMUSG00000020694.17, intron 15 of 20) 52028 ENSMUSG00000020694.17 ENSMUSG00000020694 ENSMUST00000146910 Tlk2 protein_coding Interval_153862 chr8 10139315 10139712 + 0 NA Intergenic Intergenic 74459 ENSMUSG00000109545.1 ENSMUSG00000109545 ENSMUST00000207605 Gm44788 lincRNA Interval_34783 chr12 11156966 11157160 + 0 NA Intergenic Intergenic -6007 ENSMUSG00000043673.11 ENSMUSG00000043673 ENSMUST00000164495 Kcns3 protein_coding Interval_21803 chr11 4460606 4461506 + 0 NA Intergenic Intergenic 27310 ENSMUSG00000034354.17 ENSMUSG00000034354 ENSMUST00000144242 Mtmr3 protein_coding Interval_146794 chr7 51614368 51614630 + 0 NA Intergenic Intergenic -14981 ENSMUSG00000030500.6 ENSMUSG00000030500 ENSMUST00000208597 Slc17a6 protein_coding Interval_124186 chr5 39521666 39522062 + 0 NA promoter-TSS (ENSMUSG00000077522.1) snoRNA-promoter-TSS (ENSMUSG00000077522.1) -760 ENSMUSG00000077522.1 ENSMUSG00000077522 ENSMUST00000104334 Gm25377 snoRNA Interval_71232 chr17 21460267 21460483 + 0 NA intron (ENSMUSG00000023892.8, intron 3 of 4) protein_coding-intron (ENSMUSG00000023892.8, intron 3 of 4) 10001 ENSMUSG00000023892.8 ENSMUSG00000023892 ENSMUST00000039577 Zfp51 protein_coding Interval_2610 chr1 42201649 42202231 + 0 NA Intergenic Intergenic -21552 ENSMUSG00000101877.1 ENSMUSG00000101877 ENSMUST00000191297 Gm8176 processed_pseudogene Interval_47505 chr13 85920233 85921546 + 0 NA Intergenic Intergenic 29147 ENSMUSG00000114900.1 ENSMUSG00000114900 ENSMUST00000224403 Gm46396 processed_pseudogene Interval_139949 chr6 112981947 112983063 + 0 NA Intergenic Intergenic 6292 ENSMUSG00000094189.1 ENSMUSG00000094189 ENSMUST00000117265 Gm6134 processed_pseudogene Interval_133673 chr6 8370466 8370901 + 0 NA intron (ENSMUSG00000089862.8, intron 2 of 2) protein_coding-intron (ENSMUSG00000089862.8, intron 1 of 2) -6547 ENSMUSG00000089890.1 ENSMUSG00000089890 ENSMUST00000161366 Gm16055 antisense Interval_81967 chr18 66486770 66487058 + 0 NA Intergenic Intergenic 4957 ENSMUSG00000117884.1 ENSMUSG00000117884 ENSMUST00000235885 Gm50156 processed_pseudogene Interval_24095 chr11 30197548 30198810 + 0 NA promoter-TSS (ENSMUSG00000020315.18) protein_coding-promoter-TSS (ENSMUSG00000020315.18) -69285 ENSMUSG00000073073.4 ENSMUSG00000073073 ENSMUST00000146985 Gm8098 processed_transcript Interval_110312 chr3 156588791 156589293 + 0 NA intron (ENSMUSG00000040037.13, intron 1 of 6) protein_coding-intron (ENSMUSG00000040037.13, intron 1 of 6) 26896 ENSMUSG00000040037.13 ENSMUSG00000040037 ENSMUST00000175773 Negr1 protein_coding Interval_37109 chr12 58493378 58493732 + 0 NA Intergenic Intergenic -224265 ENSMUSG00000045930.3 ENSMUSG00000045930 ENSMUST00000062254 Clec14a protein_coding Interval_93097 chr2 70118019 70119649 + 0 NA intron (ENSMUSG00000042064.13, intron 6 of 33) protein_coding-intron (ENSMUSG00000042064.13, intron 7 of 34) 35760 ENSMUSG00000042064.13 ENSMUSG00000042064 ENSMUST00000112241 Myo3b protein_coding Interval_128069 chr5 110652572 110653957 + 0 NA promoter-TSS (ENSMUSG00000029504.5) protein_coding-promoter-TSS (ENSMUSG00000029504.5) 116 ENSMUSG00000033294.11 ENSMUSG00000033294 ENSMUST00000199795 Noc4l protein_coding Interval_74327 chr17 48993007 48993209 + 0 NA intron (ENSMUSG00000040490.4, intron 1 of 2) protein_coding-intron (ENSMUSG00000040490.4, intron 1 of 2) 60729 ENSMUSG00000040490.4 ENSMUSG00000040490 ENSMUST00000046254 Lrfn2 protein_coding Interval_111378 chr4 20021927 20022734 + 0 NA intron (ENSMUSG00000073988.13, intron 3 of 4) protein_coding-intron (ENSMUSG00000073988.13, intron 3 of 4) 14392 ENSMUSG00000073988.13 ENSMUSG00000073988 ENSMUST00000098244 Ttpa protein_coding Interval_71443 chr17 23774072 23774574 + 0 NA intron (ENSMUSG00000086719.1, intron 1 of 1) antisense-intron (ENSMUSG00000086719.1, intron 1 of 1) 2482 ENSMUSG00000086719.1 ENSMUSG00000086719 ENSMUST00000147774 Gm16275 antisense Interval_168606 chr9 84109900 84110546 + 0 NA intron (ENSMUSG00000032263.14, intron 1 of 2) protein_coding-intron (ENSMUSG00000032263.14, intron 9 of 10) -78132 ENSMUSG00000077666.1 ENSMUSG00000077666 ENSMUST00000104478 Gm26146 snRNA Interval_113869 chr4 59457596 59458284 + 0 NA Intergenic Intergenic -74807 ENSMUSG00000080831.1 ENSMUSG00000080831 ENSMUST00000119529 Gm12529 processed_pseudogene Interval_10673 chr1 172603922 172604169 + 0 NA Intergenic Intergenic -1498 ENSMUSG00000070504.9 ENSMUSG00000070504 ENSMUST00000193431 Fcrl6 protein_coding Interval_107437 chr3 107667236 107668916 + 0 NA promoter-TSS (ENSMUSG00000027893.14) protein_coding-promoter-TSS (ENSMUSG00000027893.14) 27887 ENSMUSG00000027893.14 ENSMUSG00000027893 ENSMUST00000138116 Ahcyl1 protein_coding Interval_91185 chr2 35728791 35729976 + 0 NA TTS (ENSMUSG00000026883.17) protein_coding-TTS (ENSMUSG00000026883.17) 19056 ENSMUSG00000026883.17 ENSMUSG00000026883 ENSMUST00000156669 Dab2ip protein_coding Interval_66202 chr16 32302678 32303748 + 0 NA Intergenic Intergenic 23482 ENSMUSG00000116900.1 ENSMUSG00000116900 ENSMUST00000232196 Gm8387 processed_pseudogene Interval_150716 chr7 113742813 113743657 + 0 NA intron (ENSMUSG00000101755.1, intron 3 of 3) lincRNA-intron (ENSMUSG00000101755.1, intron 3 of 3) 13581 ENSMUSG00000101755.1 ENSMUSG00000101755 ENSMUST00000187378 Gm29507 lincRNA Interval_1273 chr1 18872221 18872527 + 0 NA Intergenic Intergenic 97459 ENSMUSG00000088800.1 ENSMUSG00000088800 ENSMUST00000158175 Gm24075 snoRNA Interval_157256 chr8 68673999 68674285 + 0 NA intron (ENSMUSG00000036356.15, intron 1 of 2) protein_coding-intron (ENSMUSG00000036356.15, intron 1 of 9) 54004 ENSMUSG00000085487.1 ENSMUSG00000085487 ENSMUST00000152660 Gm15654 processed_pseudogene Interval_153346 chr7 143790457 143790702 + 0 NA Intergenic Intergenic -6079 ENSMUSG00000048965.9 ENSMUSG00000048965 ENSMUST00000054048 Mrgpre protein_coding Interval_5701 chr1 91038022 91039274 + 0 NA intron (ENSMUSG00000026305.15, intron 1 of 12) protein_coding-intron (ENSMUSG00000026305.15, intron 1 of 12) -14938 ENSMUSG00000026305.15 ENSMUSG00000026305 ENSMUST00000187532 Lrrfip1 protein_coding Interval_160081 chr8 106250070 106250778 + 0 NA exon (ENSMUSG00000060098.11, exon 16 of 18) protein_coding-exon (ENSMUSG00000060098.11, exon 16 of 18) 15899 ENSMUSG00000060098.11 ENSMUSG00000060098 ENSMUST00000134151 Prmt7 protein_coding Interval_152705 chr7 136623020 136623565 + 0 NA Intergenic Intergenic -33917 ENSMUSG00000109894.1 ENSMUSG00000109894 ENSMUST00000210286 Gm5904 processed_pseudogene Interval_87255 chr19 47209241 47209968 + 0 NA intron (ENSMUSG00000006435.16, intron 1 of 2) protein_coding-intron (ENSMUSG00000006435.16, intron 1 of 5) -7572 ENSMUSG00000118127.1 ENSMUSG00000118127 ENSMUST00000236668 Gm36693 antisense Interval_45888 chr13 58826694 58828567 + 0 NA promoter-TSS (ENSMUSG00000114218.1) antisense-promoter-TSS (ENSMUSG00000114218.1) -636 ENSMUSG00000114218.1 ENSMUSG00000114218 ENSMUST00000225867 Gm47423 antisense Interval_24793 chr11 38058894 38059210 + 0 NA Intergenic Intergenic -21789 ENSMUSG00000093184.1 ENSMUSG00000093184 ENSMUST00000175443 Gm25693 miRNA Interval_168441 chr9 80495087 80495949 + 0 NA Intergenic Intergenic -30080 ENSMUSG00000032343.15 ENSMUSG00000032343 ENSMUST00000185068 Impg1 protein_coding Interval_89204 chr2 18031571 18032388 + 0 NA promoter-TSS (ENSMUSG00000085319.1) antisense-promoter-TSS (ENSMUSG00000085319.1) -554 ENSMUSG00000085319.1 ENSMUSG00000085319 ENSMUST00000136400 Gm13330 antisense Interval_70727 chr17 13906885 13907291 + 0 NA TTS (ENSMUSG00000068036.16) protein_coding-TTS (ENSMUSG00000068036.16) -4160 ENSMUSG00000115221.1 ENSMUSG00000115221 ENSMUST00000227377 Gm49121 unitary_pseudogene Interval_8060 chr1 135501748 135502608 + 0 NA intron (ENSMUSG00000009418.16, intron 6 of 30) protein_coding-intron (ENSMUSG00000009418.16, intron 3 of 29) -20764 ENSMUSG00000102474.1 ENSMUSG00000102474 ENSMUST00000193434 2610012C04Rik TEC Interval_101497 chr2 181963367 181963783 + 0 NA Intergenic Intergenic -27554 ENSMUSG00000098505.3 ENSMUSG00000098505 ENSMUST00000184507 Gm14496 protein_coding Interval_20218 chr10 116109466 116109662 + 0 NA intron (ENSMUSG00000020151.16, intron 2 of 13) protein_coding-intron (ENSMUSG00000020151.16, intron 2 of 13) 4138 ENSMUSG00000074734.3 ENSMUSG00000074734 ENSMUST00000219858 Taf7l2 protein_coding Interval_135944 chr6 49022218 49023623 + 0 NA Intergenic Intergenic -13626 ENSMUSG00000029816.10 ENSMUSG00000029816 ENSMUST00000204460 Gpnmb protein_coding Interval_59952 chr15 62175972 62176996 + 0 NA TTS (ENSMUSG00000098595.1) misc_RNA-TTS (ENSMUSG00000098595.1) 1062 ENSMUSG00000098595.1 ENSMUSG00000098595 ENSMUST00000184054 Gm27957 misc_RNA Interval_24583 chr11 34797376 34798816 + 0 NA Intergenic Intergenic 25855 ENSMUSG00000069910.2 ENSMUSG00000069910 ENSMUST00000148387 Spdl1 protein_coding Interval_34347 chr12 3539512 3539896 + 0 NA Intergenic Intergenic -16436 ENSMUSG00000112105.1 ENSMUSG00000112105 ENSMUST00000219719 Rps7-ps2 processed_pseudogene Interval_78108 chr18 8227566 8228079 + 0 NA exon (ENSMUSG00000117385.1, exon 1 of 1) processed_pseudogene-exon (ENSMUSG00000117385.1, exon 1 of 1) 184 ENSMUSG00000117385.1 ENSMUSG00000117385 ENSMUST00000234783 Gm20147 processed_pseudogene Interval_80896 chr18 49987981 49988771 + 0 NA intron (ENSMUSG00000062210.13, intron 1 of 3) protein_coding-intron (ENSMUSG00000062210.13, intron 1 of 1) -58364 ENSMUSG00000062210.13 ENSMUSG00000062210 ENSMUST00000148159 Tnfaip8 protein_coding Interval_86681 chr19 42556361 42557873 + 0 NA intron (ENSMUSG00000090117.7, intron 2 of 2) protein_coding-intron (ENSMUSG00000025184.10, intron 1 of 6) 5991 ENSMUSG00000090117.7 ENSMUSG00000090117 ENSMUST00000162829 Gm16541 antisense Interval_165403 chr9 47538415 47538791 + 0 NA intron (ENSMUSG00000032076.20, intron 1 of 8) protein_coding-intron (ENSMUSG00000032076.20, intron 1 of 8) 8251 ENSMUSG00000032076.20 ENSMUSG00000032076 ENSMUST00000034581 Cadm1 protein_coding Interval_90351 chr2 29922132 29924077 + 0 NA TTS (ENSMUSG00000026790.19) protein_coding-TTS (ENSMUSG00000026790.19) 8419 ENSMUSG00000088348.1 ENSMUSG00000088348 ENSMUST00000157723 Gm23865 snRNA Interval_172978 chrX 59492780 59494766 + 0 NA intron (ENSMUSG00000031137.17, intron 2 of 2) protein_coding-intron (ENSMUSG00000031137.17, intron 2 of 5) 74275 ENSMUSG00000031137.17 ENSMUSG00000031137 ENSMUST00000150413 Fgf13 protein_coding Interval_105815 chr3 89476058 89476585 + 0 NA Intergenic Intergenic 21780 ENSMUSG00000027952.16 ENSMUSG00000027952 ENSMUST00000184515 Pmvk protein_coding Interval_108347 chr3 124606086 124606676 + 0 NA Intergenic Intergenic -17224 ENSMUSG00000106009.1 ENSMUSG00000106009 ENSMUST00000196790 Gm9379 processed_pseudogene Interval_99217 chr2 158152732 158155419 + 0 NA Intergenic Intergenic -7682 ENSMUSG00000037820.15 ENSMUSG00000037820 ENSMUST00000152690 Tgm2 protein_coding Interval_46996 chr13 74113617 74114426 + 0 NA Intergenic Intergenic -7494 ENSMUSG00000036123.8 ENSMUSG00000036123 ENSMUST00000221703 Slc9a3 protein_coding Interval_41326 chr12 112861725 112861970 + 0 NA promoter-TSS (ENSMUSG00000021298.8) protein_coding-promoter-TSS (ENSMUSG00000021298.8) 6381 ENSMUSG00000021298.8 ENSMUSG00000021298 ENSMUST00000222776 Gpr132 protein_coding Interval_49771 chr13 114896613 114896906 + 0 NA intron (ENSMUSG00000015533.9, intron 2 of 5) protein_coding-intron (ENSMUSG00000015533.9, intron 2 of 29) 5184 ENSMUSG00000015533.9 ENSMUSG00000015533 ENSMUST00000224204 Itga2 protein_coding Interval_59492 chr15 54404901 54405099 + 0 NA Intergenic Intergenic -5774 ENSMUSG00000038591.3 ENSMUSG00000038591 ENSMUST00000036737 Colec10 protein_coding Interval_115803 chr4 104665478 104665959 + 0 NA intron (ENSMUSG00000028519.16, intron 2 of 6) protein_coding-intron (ENSMUSG00000028519.16, intron 3 of 5) 60422 ENSMUSG00000028519.16 ENSMUSG00000028519 ENSMUST00000149672 Dab1 protein_coding Interval_5258 chr1 87030737 87030937 + 0 NA intron (ENSMUSG00000053333.15, intron 15 of 20) protein_coding-intron (ENSMUSG00000053333.15, intron 14 of 20) -5886 ENSMUSG00000103984.1 ENSMUSG00000103984 ENSMUST00000195625 Gm37447 TEC Interval_61528 chr15 82186860 82189112 + 0 NA TTS (ENSMUSG00000116226.1) TEC-TTS (ENSMUSG00000116226.1) 2470 ENSMUSG00000116226.1 ENSMUSG00000116226 ENSMUST00000229390 Gm49502 TEC Interval_29380 chr11 83534374 83535344 + 0 NA Intergenic Intergenic -4346 ENSMUSG00000035042.2 ENSMUSG00000035042 ENSMUST00000125015 Ccl5 protein_coding Interval_102588 chr3 28026930 28027585 + 0 NA intron (ENSMUSG00000027695.16, intron 4 of 4) protein_coding-intron (ENSMUSG00000027695.16, intron 3 of 25) -51933 ENSMUSG00000027695.16 ENSMUSG00000027695 ENSMUST00000126594 Pld1 protein_coding Interval_157172 chr8 66876107 66876397 + 0 NA intron (ENSMUSG00000014907.10, intron 3 of 4) protein_coding-intron (ENSMUSG00000014907.10, intron 2 of 7) 15295 ENSMUSG00000014907.10 ENSMUSG00000014907 ENSMUST00000212916 Naf1 protein_coding Interval_434 chr1 5227591 5228402 + 0 NA Intergenic Intergenic 49341 ENSMUSG00000104352.1 ENSMUSG00000104352 ENSMUST00000193351 Gm7182 processed_pseudogene Interval_54436 chr14 69763531 69763884 + 0 NA promoter-TSS (ENSMUSG00000114316.1) processed_pseudogene-promoter-TSS (ENSMUSG00000114316.1) -169 ENSMUSG00000114316.1 ENSMUSG00000114316 ENSMUST00000223676 Gm17740 processed_pseudogene Interval_76315 chr17 78989732 78989945 + 0 NA intron (ENSMUSG00000024070.15, intron 2 of 18) protein_coding-intron (ENSMUSG00000024070.15, intron 1 of 17) 30978 ENSMUSG00000024070.15 ENSMUSG00000024070 ENSMUST00000130070 Prkd3 protein_coding Interval_69450 chr16 93543469 93544024 + 0 NA Intergenic Intergenic 11358 ENSMUSG00000116576.1 ENSMUSG00000116576 ENSMUST00000231728 Gm49725 lincRNA Interval_172769 chrX 48462411 48463485 + 0 NA intron (ENSMUSG00000031103.12, intron 1 of 7) protein_coding-intron (ENSMUSG00000031103.12, intron 1 of 8) 184 ENSMUSG00000031103.12 ENSMUSG00000031103 ENSMUST00000140486 Elf4 protein_coding Interval_59602 chr15 55869193 55869446 + 0 NA intron (ENSMUSG00000060429.12, intron 1 of 1) protein_coding-intron (ENSMUSG00000060429.12, intron 1 of 6) 36991 ENSMUSG00000060429.12 ENSMUSG00000060429 ENSMUST00000140574 Sntb1 protein_coding Interval_69095 chr16 90623819 90624859 + 0 NA Intergenic Intergenic 21843 ENSMUSG00000064471.1 ENSMUSG00000064471 ENSMUST00000082537 Gm23406 snoRNA Interval_154398 chr8 15605568 15606449 + 0 NA intron (ENSMUSG00000110217.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000110217.1, intron 1 of 2) 21285 ENSMUSG00000110217.1 ENSMUSG00000110217 ENSMUST00000211080 Gm45408 lincRNA Interval_132020 chr5 142326973 142327561 + 0 NA Intergenic Intergenic 44161 ENSMUSG00000097947.1 ENSMUSG00000097947 ENSMUST00000182990 Gm26970 processed_pseudogene Interval_44307 chr13 43530990 43531940 + 0 NA exon (ENSMUSG00000112983.1, exon 2 of 2) lincRNA-exon (ENSMUSG00000112983.1, exon 2 of 2) 1245 ENSMUSG00000112983.1 ENSMUSG00000112983 ENSMUST00000222336 Gm32939 lincRNA Interval_5680 chr1 90869046 90869275 + 0 NA Intergenic Intergenic 2259 ENSMUSG00000103978.1 ENSMUSG00000103978 ENSMUST00000194161 4930474B08Rik TEC Interval_150826 chr7 115204870 115205148 + 0 NA Intergenic Intergenic 32736 ENSMUSG00000099211.1 ENSMUSG00000099211 ENSMUST00000183778 Gm27684 miRNA Interval_110257 chr3 154978587 154978928 + 0 NA intron (ENSMUSG00000040086.13, intron 6 of 22) protein_coding-intron (ENSMUSG00000040086.13, intron 6 of 24) 57461 ENSMUSG00000102238.1 ENSMUSG00000102238 ENSMUST00000195610 Gm37890 TEC Interval_169635 chr9 99580411 99581273 + 0 NA intron (ENSMUSG00000032469.12, intron 5 of 5) protein_coding-intron (ENSMUSG00000032469.12, intron 5 of 7) 4762 ENSMUSG00000032469.12 ENSMUSG00000032469 ENSMUST00000136884 Dbr1 protein_coding Interval_133240 chr5 150800457 150800727 + 0 NA TTS (ENSMUSG00000034021.15) protein_coding-TTS (ENSMUSG00000034021.15) -22267 ENSMUSG00000106692.1 ENSMUSG00000106692 ENSMUST00000201101 Gm36447 lincRNA Interval_19717 chr10 108280243 108281198 + 0 NA TTS (ENSMUSG00000019907.10) protein_coding-TTS (ENSMUSG00000019907.10) 31126 ENSMUSG00000019907.10 ENSMUSG00000019907 ENSMUST00000219559 Ppp1r12a protein_coding Interval_70188 chr17 6040507 6040779 + 0 NA intron (ENSMUSG00000023805.17, intron 22 of 22) protein_coding-intron (ENSMUSG00000023805.17, intron 25 of 25) 9412 ENSMUSG00000015659.12 ENSMUSG00000015659 ENSMUST00000139542 Serac1 protein_coding Interval_118380 chr4 130995808 130996673 + 0 NA intron (ENSMUSG00000085804.1, intron 3 of 3) lincRNA-intron (ENSMUSG00000085804.1, intron 3 of 3) 14234 ENSMUSG00000086262.7 ENSMUSG00000086262 ENSMUST00000153810 A930031H19Rik lincRNA Interval_152387 chr7 132673811 132674507 + 0 NA intron (ENSMUSG00000030946.13, intron 7 of 7) protein_coding-intron (ENSMUSG00000030946.13, intron 6 of 6) -14275 ENSMUSG00000087348.1 ENSMUSG00000087348 ENSMUST00000132849 Gm15582 antisense Interval_168163 chr9 77637461 77637694 + 0 NA intron (ENSMUSG00000044938.8, intron 1 of 2) protein_coding-intron (ENSMUSG00000044938.8, intron 1 of 2) 1077 ENSMUSG00000044938.8 ENSMUSG00000044938 ENSMUST00000057781 Klhl31 protein_coding Interval_67750 chr16 56855024 56855499 + 0 NA intron (ENSMUSG00000022754.6, intron 1 of 5) protein_coding-intron (ENSMUSG00000022754.6, intron 1 of 5) 12454 ENSMUSG00000022754.6 ENSMUSG00000022754 ENSMUST00000135672 Tmem45a protein_coding Interval_98162 chr2 148902279 148902913 + 0 NA Intergenic Intergenic -12308 ENSMUSG00000103559.1 ENSMUSG00000103559 ENSMUST00000195146 Gm38221 TEC Interval_138599 chr6 90288464 90288988 + 0 NA Intergenic Intergenic -7496 ENSMUSG00000108119.1 ENSMUSG00000108119 ENSMUST00000205132 Gm43891 TEC Interval_114445 chr4 77519156 77519488 + 0 NA intron (ENSMUSG00000028399.18, intron 4 of 6) protein_coding-intron (ENSMUSG00000028399.18, intron 4 of 14) -560824 ENSMUSG00000092829.1 ENSMUSG00000092829 ENSMUST00000175088 Gm23159 miRNA Interval_91979 chr2 52122929 52123147 + 0 NA TTS (ENSMUSG00000036202.16) protein_coding-TTS (ENSMUSG00000036202.16) 10905 ENSMUSG00000036202.16 ENSMUSG00000036202 ENSMUST00000152178 Rif1 protein_coding Interval_28524 chr11 76499193 76500201 + 0 NA intron (ENSMUSG00000017631.19, intron 2 of 22) protein_coding-intron (ENSMUSG00000017631.19, intron 2 of 22) -14372 ENSMUSG00000080763.2 ENSMUSG00000080763 ENSMUST00000119724 Gm12341 processed_pseudogene Interval_123812 chr5 35698505 35699572 + 0 NA intron (ENSMUSG00000036553.16, intron 17 of 17) protein_coding-intron (ENSMUSG00000036553.16, intron 17 of 17) -19944 ENSMUSG00000029096.15 ENSMUSG00000029096 ENSMUST00000200810 Htra3 protein_coding Interval_47036 chr13 74571417 74572344 + 0 NA Intergenic Intergenic -1325 ENSMUSG00000113279.1 ENSMUSG00000113279 ENSMUST00000221881 Gm47470 processed_pseudogene Interval_150903 chr7 116251291 116253122 + 0 NA intron (ENSMUSG00000045659.18, intron 3 of 18) protein_coding-intron (ENSMUSG00000045659.18, intron 3 of 26) 30537 ENSMUSG00000108650.1 ENSMUSG00000108650 ENSMUST00000205675 Gm44867 sense_intronic Interval_118158 chr4 129284593 129285138 + 0 NA Intergenic Intergenic -1919 ENSMUSG00000093163.1 ENSMUSG00000093163 ENSMUST00000175422 Gm22994 miRNA Interval_51040 chr14 21747936 21748618 + 0 NA intron (ENSMUSG00000021768.15, intron 1 of 3) protein_coding-intron (ENSMUSG00000021768.15, intron 1 of 7) 361 ENSMUSG00000021768.15 ENSMUSG00000021768 ENSMUST00000127051 Dusp13 protein_coding Interval_30140 chr11 89632507 89633001 + 0 NA intron (ENSMUSG00000047773.15, intron 4 of 21) protein_coding-intron (ENSMUSG00000047773.15, intron 2 of 16) 208512 ENSMUSG00000047773.15 ENSMUSG00000047773 ENSMUST00000207171 Ankfn1 protein_coding Interval_103765 chr3 52458315 52459109 + 0 NA Intergenic Intergenic 33304 ENSMUSG00000103454.1 ENSMUSG00000103454 ENSMUST00000194115 Gm38098 processed_pseudogene Interval_21659 chr11 3514330 3515501 + 0 NA promoter-TSS (ENSMUSG00000075702.9) protein_coding-promoter-TSS (ENSMUSG00000075702.9) 213 ENSMUSG00000075702.9 ENSMUSG00000075702 ENSMUST00000094469 Selenom protein_coding Interval_11642 chr1 183708831 183709490 + 0 NA Intergenic Intergenic -27029 ENSMUSG00000090533.2 ENSMUSG00000090533 ENSMUST00000172123 Gm8214 processed_pseudogene Interval_51358 chr14 26991083 26992518 + 0 NA Intergenic Intergenic -2616 ENSMUSG00000040726.10 ENSMUSG00000040726 ENSMUST00000035433 Hesx1 protein_coding Interval_9082 chr1 153480063 153481264 + 0 NA promoter-TSS (ENSMUSG00000042699.11) protein_coding-promoter-TSS (ENSMUSG00000042699.11) -2524 ENSMUSG00000042699.11 ENSMUSG00000042699 ENSMUST00000189425 Dhx9 protein_coding Interval_173865 chrX 106176145 106176835 + 0 NA exon (ENSMUSG00000081081.1, exon 1 of 1) processed_pseudogene-exon (ENSMUSG00000081081.1, exon 1 of 1) 176 ENSMUSG00000081081.1 ENSMUSG00000081081 ENSMUST00000121548 Gm14856 processed_pseudogene Interval_96688 chr2 127166492 127166927 + 0 NA Intergenic Intergenic -24119 ENSMUSG00000074825.4 ENSMUSG00000074825 ENSMUST00000154021 Itpripl1 protein_coding Interval_92155 chr2 54512129 54512655 + 0 NA intron (ENSMUSG00000060988.12, intron 2 of 12) protein_coding-intron (ENSMUSG00000060988.12, intron 2 of 12) 53744 ENSMUSG00000089272.1 ENSMUSG00000089272 ENSMUST00000158647 Gm24549 snoRNA Interval_11709 chr1 184817938 184818160 + 0 NA intron (ENSMUSG00000073481.9, intron 4 of 4) protein_coding-intron (ENSMUSG00000073481.9, intron 7 of 7) 4439 ENSMUSG00000088559.1 ENSMUSG00000088559 ENSMUST00000157934 Mir1981 miRNA Interval_19655 chr10 107271302 107272987 + 0 NA promoter-TSS (ENSMUSG00000019906.15) protein_coding-promoter-TSS (ENSMUSG00000019906.15) -250 ENSMUSG00000019906.15 ENSMUSG00000019906 ENSMUST00000218031 Lin7a protein_coding Interval_29683 chr11 86021453 86021652 + 0 NA Intergenic Intergenic 71057 ENSMUSG00000081632.1 ENSMUSG00000081632 ENSMUST00000118790 Gm11443 processed_pseudogene Interval_38438 chr12 79034242 79036219 + 0 NA promoter-TSS (ENSMUSG00000060716.7) protein_coding-promoter-TSS (ENSMUSG00000060716.7) -406 ENSMUSG00000060716.7 ENSMUSG00000060716 ENSMUST00000219946 Plekhh1 protein_coding Interval_49235 chr13 109701861 109702736 + 0 NA intron (ENSMUSG00000021699.17, intron 1 of 4) protein_coding-intron (ENSMUSG00000021699.17, intron 1 of 14) -201511 ENSMUSG00000084651.1 ENSMUSG00000084651 ENSMUST00000122702 Mir1904 miRNA Interval_124409 chr5 45621366 45621981 + 0 NA intron (ENSMUSG00000015879.8, intron 1 of 15) protein_coding-intron (ENSMUSG00000015879.8, intron 1 of 15) -17708 ENSMUSG00000097825.5 ENSMUSG00000097825 ENSMUST00000200144 9630001P10Rik antisense Interval_99146 chr2 157475264 157476168 + 0 NA Intergenic Intergenic 46312 ENSMUSG00000081740.3 ENSMUSG00000081740 ENSMUST00000117142 Gm14279 processed_pseudogene Interval_11805 chr1 185560915 185563458 + 0 NA Intergenic Intergenic 74892 ENSMUSG00000102185.1 ENSMUSG00000102185 ENSMUST00000192616 5033404E19Rik transcribed_processed_pseudogene Interval_44568 chr13 46181689 46181961 + 0 NA intron (ENSMUSG00000062282.4, intron 1 of 1) lincRNA-intron (ENSMUSG00000062282.4, intron 1 of 1) 9221 ENSMUSG00000062282.4 ENSMUSG00000062282 ENSMUST00000072437 Gm10113 lincRNA Interval_20284 chr10 116662366 116663773 + 0 NA Intergenic Intergenic -11522 ENSMUSG00000097104.1 ENSMUSG00000097104 ENSMUST00000181656 Gm26579 lincRNA Interval_134856 chr6 32705923 32707204 + 0 NA Intergenic Intergenic 45725 ENSMUSG00000106873.1 ENSMUSG00000106873 ENSMUST00000202626 BC049739 lincRNA Interval_17881 chr10 80566031 80566956 + 0 NA TTS (ENSMUSG00000035397.8) protein_coding-TTS (ENSMUSG00000035397.8) 10828 ENSMUSG00000035397.8 ENSMUSG00000035397 ENSMUST00000038558 Klf16 protein_coding Interval_140739 chr6 120971287 120972463 + 0 NA intron (ENSMUSG00000051586.17, intron 21 of 33) protein_coding-intron (ENSMUSG00000051586.17, intron 5 of 15) 13031 ENSMUSG00000108171.1 ENSMUSG00000108171 ENSMUST00000203013 Gm43915 antisense Interval_129689 chr5 121769561 121769792 + 0 NA intron (ENSMUSG00000042605.16, intron 5 of 9) protein_coding-intron (ENSMUSG00000042605.16, intron 5 of 24) 27259 ENSMUSG00000105179.1 ENSMUSG00000105179 ENSMUST00000195919 Gm42866 TEC Interval_147055 chr7 60224320 60224577 + 0 NA Intergenic Intergenic -48412 ENSMUSG00000109451.1 ENSMUSG00000109451 ENSMUST00000208834 Gm18129 processed_pseudogene Interval_45731 chr13 57362315 57363231 + 0 NA Intergenic Intergenic 86095 ENSMUSG00000114411.1 ENSMUSG00000114411 ENSMUST00000224461 Gm48176 processed_pseudogene Interval_97974 chr2 146299453 146300663 + 0 NA intron (ENSMUSG00000037110.20, intron 39 of 41) protein_coding-intron (ENSMUSG00000037110.20, intron 38 of 40) -5489 ENSMUSG00000042938.8 ENSMUSG00000042938 ENSMUST00000122417 Gm14117 processed_pseudogene Interval_21290 chr10 127686043 127686992 + 0 NA intron (ENSMUSG00000040195.11, intron 3 of 10) protein_coding-intron (ENSMUSG00000040195.11, intron 1 of 8) -9793 ENSMUSG00000087163.1 ENSMUSG00000087163 ENSMUST00000155550 Gm16230 antisense Interval_83481 chr18 86710245 86712138 + 0 NA promoter-TSS (ENSMUSG00000024647.14) protein_coding-promoter-TSS (ENSMUSG00000024647.14) -1857 ENSMUSG00000024647.14 ENSMUSG00000024647 ENSMUST00000169470 Cbln2 protein_coding Interval_143206 chr7 4482492 4482766 + 0 NA promoter-TSS (ENSMUSG00000019254.16) protein_coding-promoter-TSS (ENSMUSG00000019254.16) 3303 ENSMUSG00000019254.16 ENSMUSG00000019254 ENSMUST00000125220 Ppp1r12c protein_coding Interval_35881 chr12 31567571 31568338 + 0 NA Intergenic Intergenic 5088 ENSMUSG00000112718.1 ENSMUSG00000112718 ENSMUST00000220174 Gm48524 processed_pseudogene Interval_149102 chr7 93254334 93254908 + 0 NA Intergenic Intergenic 69329 ENSMUSG00000109175.1 ENSMUSG00000109175 ENSMUST00000208462 Gm44947 lincRNA Interval_135757 chr6 47013256 47014000 + 0 NA intron (ENSMUSG00000039419.17, intron 16 of 23) protein_coding-intron (ENSMUSG00000039419.17, intron 16 of 23) -31528 ENSMUSG00000107952.1 ENSMUSG00000107952 ENSMUST00000203583 Gm6352 processed_pseudogene Interval_124841 chr5 56291522 56292524 + 0 NA Intergenic Intergenic -122187 ENSMUSG00000106326.1 ENSMUSG00000106326 ENSMUST00000197497 Gm42977 transcribed_processed_pseudogene Interval_87774 chr19 55768999 55769280 + 0 NA intron (ENSMUSG00000024985.20, intron 4 of 14) protein_coding-intron (ENSMUSG00000024985.20, intron 3 of 11) 26875 ENSMUSG00000024985.20 ENSMUSG00000024985 ENSMUST00000148666 Tcf7l2 protein_coding Interval_145638 chr7 36656019 36656494 + 0 NA Intergenic Intergenic -39182 ENSMUSG00000104330.1 ENSMUSG00000104330 ENSMUST00000192928 Gm38285 TEC Interval_9866 chr1 163477095 163477283 + 0 NA Intergenic Intergenic -73533 ENSMUSG00000040124.5 ENSMUSG00000040124 ENSMUST00000185299 Gorab protein_coding Interval_66829 chr16 37954233 37954743 + 0 NA intron (ENSMUSG00000046961.8, intron 3 of 9) protein_coding-intron (ENSMUSG00000046961.8, intron 3 of 9) -25599 ENSMUSG00000065188.1 ENSMUSG00000065188 ENSMUST00000083254 Gm25140 snRNA Interval_82950 chr18 79938393 79938769 + 0 NA Intergenic Intergenic 2429 ENSMUSG00000117722.1 ENSMUSG00000117722 ENSMUST00000237311 Gm18910 processed_pseudogene Interval_14327 chr10 30905971 30906176 + 0 NA Intergenic Intergenic 25556 ENSMUSG00000110918.1 ENSMUSG00000110918 ENSMUST00000215584 Gm48862 processed_pseudogene Interval_117776 chr4 126177314 126177507 + 0 NA intron (ENSMUSG00000043962.16, intron 1 of 2) protein_coding-intron (ENSMUSG00000043962.16, intron 4 of 10) 2737 ENSMUSG00000043962.16 ENSMUSG00000043962 ENSMUST00000124327 Thrap3 protein_coding Interval_118070 chr4 128766818 128767808 + 0 NA exon (ENSMUSG00000028794.13, exon 5 of 5) protein_coding-exon (ENSMUSG00000028794.13, exon 5 of 5) 11949 ENSMUSG00000028794.13 ENSMUSG00000028794 ENSMUST00000030585 A3galt2 protein_coding Interval_58956 chr15 40878999 40879615 + 0 NA intron (ENSMUSG00000022306.9, intron 4 of 7) protein_coding-intron (ENSMUSG00000022306.9, intron 4 of 7) -28258 ENSMUSG00000116397.1 ENSMUSG00000116397 ENSMUST00000230162 Gm49525 TEC Interval_104308 chr3 63211300 63211522 + 0 NA Intergenic Intergenic -37550 ENSMUSG00000102270.1 ENSMUSG00000102270 ENSMUST00000193000 Gm8388 processed_pseudogene Interval_91954 chr2 52013159 52013812 + 0 NA Intergenic Intergenic -24524 ENSMUSG00000053475.5 ENSMUSG00000053475 ENSMUST00000065927 Tnfaip6 protein_coding Interval_53726 chr14 61237168 61238482 + 0 NA intron (ENSMUSG00000035296.14, intron 4 of 8) protein_coding-intron (ENSMUSG00000035296.14, intron 3 of 7) -5385 ENSMUSG00000035296.14 ENSMUSG00000035296 ENSMUST00000129886 Sgcg protein_coding Interval_61336 chr15 80928938 80931638 + 0 NA TTS (ENSMUSG00000047888.10) protein_coding-TTS (ENSMUSG00000047888.10) 7224 ENSMUSG00000047888.10 ENSMUSG00000047888 ENSMUST00000228525 Tnrc6b protein_coding Interval_64122 chr16 8554623 8555938 + 0 NA intron (ENSMUSG00000057880.12, intron 1 of 2) protein_coding-intron (ENSMUSG00000057880.12, intron 1 of 15) -28347 ENSMUSG00000057880.12 ENSMUSG00000057880 ENSMUST00000128459 Abat protein_coding Interval_66895 chr16 38386629 38386880 + 0 NA Intergenic Intergenic 14756 ENSMUSG00000022803.12 ENSMUSG00000022803 ENSMUST00000146342 Popdc2 protein_coding Interval_22362 chr11 9134661 9137604 + 0 NA TTS (ENSMUSG00000020407.13) protein_coding-TTS (ENSMUSG00000020407.13) 14465 ENSMUSG00000101841.1 ENSMUSG00000101841 ENSMUST00000121861 Gm11993 processed_pseudogene Interval_131276 chr5 136124528 136124898 + 0 NA exon (ENSMUSG00000029703.10, exon 1 of 4) protein_coding-exon (ENSMUSG00000029703.10, exon 1 of 4) -3043 ENSMUSG00000105349.1 ENSMUSG00000105349 ENSMUST00000199799 Gm43604 antisense Interval_156230 chr8 46281460 46281795 + 0 NA Intergenic Intergenic 1955 ENSMUSG00000109692.1 ENSMUSG00000109692 ENSMUST00000210262 Gm8575 processed_pseudogene Interval_91205 chr2 35909619 35909875 + 0 NA intron (ENSMUSG00000026885.13, intron 2 of 7) protein_coding-intron (ENSMUSG00000026885.13, intron 3 of 9) 42667 ENSMUSG00000026885.13 ENSMUSG00000026885 ENSMUST00000162172 Ttll11 protein_coding Interval_19129 chr10 94905657 94906476 + 0 NA intron (ENSMUSG00000074785.5, intron 3 of 4) protein_coding-intron (ENSMUSG00000074785.5, intron 4 of 30) -22274 ENSMUSG00000112736.1 ENSMUSG00000112736 ENSMUST00000220244 Gm48718 TEC Interval_64776 chr16 15629444 15629887 + 0 NA exon (ENSMUSG00000022673.5, exon 11 of 16) protein_coding-exon (ENSMUSG00000022673.5, exon 11 of 16) 6593 ENSMUSG00000022673.5 ENSMUSG00000022673 ENSMUST00000230437 Mcm4 protein_coding Interval_163307 chr9 20745853 20746855 + 0 NA promoter-TSS (ENSMUSG00000032172.8) protein_coding-promoter-TSS (ENSMUSG00000032172.8) -19417 ENSMUSG00000032172.8 ENSMUSG00000032172 ENSMUST00000215039 Olfm2 protein_coding Interval_123723 chr5 34902064 34903300 + 0 NA intron (ENSMUSG00000029104.15, intron 7 of 7) protein_coding-intron (ENSMUSG00000029104.15, intron 60 of 66) -12406 ENSMUSG00000051246.3 ENSMUSG00000051246 ENSMUST00000202205 Msantd1 protein_coding Interval_142525 chr6 143080553 143081500 + 0 NA intron (ENSMUSG00000030279.15, intron 4 of 24) protein_coding-intron (ENSMUSG00000030279.15, intron 5 of 24) 19064 ENSMUSG00000030279.15 ENSMUSG00000030279 ENSMUST00000205079 C2cd5 protein_coding Interval_120924 chr4 151683561 151683763 + 0 NA intron (ENSMUSG00000014592.21, intron 2 of 7) protein_coding-intron (ENSMUSG00000014592.21, intron 3 of 23) 178042 ENSMUSG00000014592.21 ENSMUSG00000014592 ENSMUST00000135780 Camta1 protein_coding Interval_80702 chr18 46483384 46484969 + 0 NA Intergenic Intergenic -10152 ENSMUSG00000088804.1 ENSMUSG00000088804 ENSMUST00000158179 Gm24076 snRNA Interval_52918 chr14 52052705 52054166 + 0 NA Intergenic Intergenic -13582 ENSMUSG00000044286.6 ENSMUSG00000044286 ENSMUST00000214342 Olfr221 protein_coding Interval_125912 chr5 75641816 75642139 + 0 NA intron (ENSMUSG00000005672.12, intron 13 of 20) protein_coding-intron (ENSMUSG00000005672.12, intron 13 of 20) -7117 ENSMUSG00000005672.12 ENSMUSG00000005672 ENSMUST00000201240 Kit protein_coding Interval_80997 chr18 52493226 52493602 + 0 NA Intergenic Intergenic -19675 ENSMUSG00000098000.1 ENSMUSG00000098000 ENSMUST00000183003 Gm27026 processed_pseudogene Interval_61435 chr15 81599109 81599322 + 0 NA intron (ENSMUSG00000055024.12, intron 1 of 10) protein_coding-intron (ENSMUSG00000055024.12, intron 1 of 30) 7122 ENSMUSG00000084739.1 ENSMUSG00000084739 ENSMUST00000122790 Gm22067 snRNA Interval_65228 chr16 20692158 20693886 + 0 NA promoter-TSS (ENSMUSG00000050821.14) protein_coding-promoter-TSS (ENSMUSG00000050821.14) -229 ENSMUSG00000050821.14 ENSMUSG00000050821 ENSMUST00000128273 Fam131a protein_coding Interval_116280 chr4 109243733 109244766 + 0 NA promoter-TSS (ENSMUSG00000028558.14) protein_coding-promoter-TSS (ENSMUSG00000028558.14) -333 ENSMUSG00000028558.14 ENSMUSG00000028558 ENSMUST00000141555 Calr4 protein_coding Interval_88439 chr2 5075517 5076477 + 0 NA Intergenic Intergenic 38717 ENSMUSG00000086430.1 ENSMUSG00000086430 ENSMUST00000145585 4930551O13Rik antisense Interval_16552 chr10 63593901 63594778 + 0 NA intron (ENSMUSG00000060843.11, intron 5 of 17) protein_coding-intron (ENSMUSG00000060843.11, intron 4 of 16) -172550 ENSMUSG00000048185.5 ENSMUSG00000048185 ENSMUST00000054760 Gm7075 protein_coding Interval_88425 chr2 4999040 4999398 + 0 NA exon (ENSMUSG00000026669.14, exon 4 of 4) protein_coding-exon (ENSMUSG00000026669.14, exon 4 of 4) -4381 ENSMUSG00000026669.14 ENSMUSG00000026669 ENSMUST00000125851 Mcm10 protein_coding Interval_50175 chr14 8615740 8616156 + 0 NA intron (ENSMUSG00000021747.12, intron 4 of 12) protein_coding-intron (ENSMUSG00000021747.12, intron 4 of 15) 50291 ENSMUSG00000021747.12 ENSMUSG00000021747 ENSMUST00000225744 4930452B06Rik protein_coding Interval_174789 chrX 166626617 166627405 + 0 NA Intergenic Intergenic -5469 ENSMUSG00000087677.1 ENSMUSG00000087677 ENSMUST00000156526 Gm15226 lincRNA Interval_121242 chr4 154328494 154329689 + 0 NA intron (ENSMUSG00000039410.16, intron 2 of 3) protein_coding-intron (ENSMUSG00000039410.16, intron 12 of 16) 5831 ENSMUSG00000039410.16 ENSMUSG00000039410 ENSMUST00000149605 Prdm16 protein_coding Interval_82184 chr18 68538139 68538418 + 0 NA Intergenic Intergenic -21144 ENSMUSG00000117811.1 ENSMUSG00000117811 ENSMUST00000238121 Gm29677 lincRNA Interval_121348 chr4 155150243 155151479 + 0 NA Intergenic Intergenic 37435 ENSMUSG00000029050.15 ENSMUSG00000029050 ENSMUST00000030917 Ski protein_coding Interval_110264 chr3 155113327 155113540 + 0 NA intron (ENSMUSG00000028182.14, intron 3 of 5) protein_coding-intron (ENSMUSG00000028182.14, intron 3 of 7) 18568 ENSMUSG00000104122.1 ENSMUSG00000104122 ENSMUST00000194899 Gm37482 TEC Interval_92194 chr2 55920496 55920734 + 0 NA Intergenic Intergenic 52379 ENSMUSG00000082499.1 ENSMUSG00000082499 ENSMUST00000120242 Gm13615 processed_pseudogene Interval_51144 chr14 24141546 24142235 + 0 NA intron (ENSMUSG00000021782.14, intron 2 of 5) protein_coding-intron (ENSMUSG00000021782.14, intron 22 of 26) 8656 ENSMUSG00000021782.14 ENSMUSG00000021782 ENSMUST00000169880 Dlg5 protein_coding Interval_77067 chr17 86180404 86180595 + 0 NA intron (ENSMUSG00000045038.14, intron 1 of 14) protein_coding-intron (ENSMUSG00000045038.14, intron 2 of 15) 4924 ENSMUSG00000117546.1 ENSMUSG00000117546 ENSMUST00000234087 AC154542.1 TEC Interval_24539 chr11 34204293 34204726 + 0 NA exon (ENSMUSG00000047861.2, exon 2 of 2) protein_coding-exon (ENSMUSG00000047861.2, exon 2 of 2) 3580 ENSMUSG00000047861.2 ENSMUSG00000047861 ENSMUST00000060271 Foxi1 protein_coding Interval_146737 chr7 49818968 49819664 + 0 NA exon (ENSMUSG00000109154.1, exon 1 of 1) TEC-exon (ENSMUSG00000109154.1, exon 1 of 1) 5114 ENSMUSG00000109154.1 ENSMUSG00000109154 ENSMUST00000208559 Gm44822 TEC Interval_114440 chr4 77062645 77063368 + 0 NA intron (ENSMUSG00000028399.18, intron 7 of 9) protein_coding-intron (ENSMUSG00000028399.18, intron 7 of 14) -104508 ENSMUSG00000092829.1 ENSMUSG00000092829 ENSMUST00000175088 Gm23159 miRNA Interval_162384 chr8 127669124 127669752 + 0 NA Intergenic Intergenic 71732 ENSMUSG00000088580.1 ENSMUSG00000088580 ENSMUST00000157955 Gm22968 rRNA Interval_6352 chr1 106190623 106192014 + 0 NA intron (ENSMUSG00000044340.7, intron 1 of 16) protein_coding-intron (ENSMUSG00000044340.7, intron 1 of 16) -19794 ENSMUSG00000101583.1 ENSMUSG00000101583 ENSMUST00000190105 Gm20753 lincRNA Interval_48934 chr13 105081932 105082386 + 0 NA promoter-TSS (ENSMUSG00000021718.5) protein_coding-promoter-TSS (ENSMUSG00000021718.5) 37 ENSMUSG00000021718.5 ENSMUSG00000021718 ENSMUST00000022232 Nt5el protein_coding Interval_160270 chr8 107576618 107577027 + 0 NA Intergenic Intergenic 11636 ENSMUSG00000039067.5 ENSMUSG00000039067 ENSMUST00000213080 Psmd7 protein_coding Interval_85771 chr19 30739288 30739543 + 0 NA intron (ENSMUSG00000052920.16, intron 1 of 2) protein_coding-intron (ENSMUSG00000052920.16, intron 7 of 17) -8833 ENSMUSG00000052920.16 ENSMUSG00000052920 ENSMUST00000182685 Prkg1 protein_coding Interval_150611 chr7 112793621 112795115 + 0 NA intron (ENSMUSG00000055320.18, intron 2 of 13) protein_coding-intron (ENSMUSG00000055320.18, intron 2 of 13) 80417 ENSMUSG00000106046.1 ENSMUSG00000106046 ENSMUST00000199696 Gm44462 miRNA Interval_62692 chr15 96306972 96307430 + 0 NA intron (ENSMUSG00000033237.19, intron 3 of 4) protein_coding-intron (ENSMUSG00000033237.19, intron 3 of 20) -22706 ENSMUSG00000097536.2 ENSMUSG00000097536 ENSMUST00000185067 2610037D02Rik lincRNA Interval_117383 chr4 123358578 123359262 + 0 NA intron (ENSMUSG00000028649.21, intron 91 of 93) protein_coding-intron (ENSMUSG00000028649.21, intron 90 of 92) -16117 ENSMUSG00000032726.12 ENSMUSG00000032726 ENSMUST00000040496 Bmp8a protein_coding Interval_94248 chr2 86394005 86395043 + 0 NA promoter-TSS (ENSMUSG00000111010.1) unprocessed_pseudogene-promoter-TSS (ENSMUSG00000111010.1) -572 ENSMUSG00000111010.1 ENSMUSG00000111010 ENSMUST00000216939 Gm20734 unprocessed_pseudogene Interval_52585 chr14 47698996 47699529 + 0 NA intron (ENSMUSG00000021843.17, intron 17 of 38) protein_coding-intron (ENSMUSG00000021843.17, intron 17 of 41) 35475 ENSMUSG00000021843.17 ENSMUSG00000021843 ENSMUST00000190857 Ktn1 protein_coding Interval_71471 chr17 24000348 24000617 + 0 NA Intergenic Intergenic -2382 ENSMUSG00000045027.7 ENSMUSG00000045027 ENSMUST00000041649 Prss22 protein_coding Interval_99776 chr2 164839808 164841150 + 0 NA TTS (ENSMUSG00000017760.16) protein_coding-TTS (ENSMUSG00000017760.16) 6632 ENSMUSG00000017760.16 ENSMUSG00000017760 ENSMUST00000140213 Ctsa protein_coding Interval_23621 chr11 23910270 23910498 + 0 NA Intergenic Intergenic 15824 ENSMUSG00000084769.1 ENSMUSG00000084769 ENSMUST00000151881 Gm12061 antisense Interval_73256 chr17 35812420 35813962 + 0 NA Intergenic Intergenic -8493 ENSMUSG00000003541.6 ENSMUSG00000003541 ENSMUST00000003635 Ier3 protein_coding Interval_85293 chr19 24447984 24448462 + 0 NA intron (ENSMUSG00000024867.14, intron 1 of 3) protein_coding-intron (ENSMUSG00000024867.14, intron 1 of 14) 29133 ENSMUSG00000074922.1 ENSMUSG00000074922 ENSMUST00000099556 Fam122a protein_coding Interval_5455 chr1 88994846 88995300 + 0 NA Intergenic Intergenic -21040 ENSMUSG00000099378.1 ENSMUSG00000099378 ENSMUST00000186180 1700067G17Rik lincRNA Interval_112118 chr4 34813000 34813700 + 0 NA intron (ENSMUSG00000039967.14, intron 7 of 7) protein_coding-intron (ENSMUSG00000039967.14, intron 7 of 7) -29635 ENSMUSG00000082367.1 ENSMUSG00000082367 ENSMUST00000122250 Gm12363 processed_pseudogene Interval_86354 chr19 38958234 38958514 + 0 NA intron (ENSMUSG00000025001.11, intron 17 of 21) protein_coding-intron (ENSMUSG00000025001.11, intron 17 of 21) -18273 ENSMUSG00000114610.1 ENSMUSG00000114610 ENSMUST00000225458 Cyp2c52-ps unprocessed_pseudogene Interval_49773 chr13 114931192 114932616 + 0 NA exon (ENSMUSG00000015533.9, exon 1 of 30) protein_coding-exon (ENSMUSG00000015533.9, exon 1 of 30) 3164 ENSMUSG00000114703.1 ENSMUSG00000114703 ENSMUST00000225140 Gm47776 processed_pseudogene Interval_160924 chr8 115088349 115088574 + 0 NA intron (ENSMUSG00000004637.15, intron 8 of 8) protein_coding-intron (ENSMUSG00000004637.15, intron 8 of 8) -35548 ENSMUSG00000088428.1 ENSMUSG00000088428 ENSMUST00000157803 Gm22556 rRNA Interval_131557 chr5 138116355 138117902 + 0 NA promoter-TSS (ENSMUSG00000037017.15) protein_coding-promoter-TSS (ENSMUSG00000037017.15) 148 ENSMUSG00000037017.15 ENSMUSG00000037017 ENSMUST00000110959 Zscan21 protein_coding Interval_80433 chr18 42186308 42186554 + 0 NA exon (ENSMUSG00000117660.1, exon 2 of 2) processed_pseudogene-exon (ENSMUSG00000117660.1, exon 2 of 2) 1341 ENSMUSG00000117660.1 ENSMUSG00000117660 ENSMUST00000237209 Gm18086 processed_pseudogene Interval_135110 chr6 35483891 35484166 + 0 NA Intergenic Intergenic 40610 ENSMUSG00000095986.1 ENSMUSG00000095986 ENSMUST00000175136 Gm23053 miRNA Interval_141215 chr6 125661366 125662011 + 0 NA exon (ENSMUSG00000001930.17, exon 8 of 8) protein_coding-exon (ENSMUSG00000001930.17, exon 8 of 8) -48938 ENSMUSG00000038115.16 ENSMUSG00000038115 ENSMUST00000159984 Ano2 protein_coding Interval_71449 chr17 23806871 23807104 + 0 NA promoter-TSS (ENSMUSG00000039218.17) protein_coding-promoter-TSS (ENSMUSG00000039218.17) 3753 ENSMUSG00000039218.17 ENSMUSG00000039218 ENSMUST00000190568 Srrm2 protein_coding Interval_144062 chr7 19249954 19250287 + 0 NA intron (ENSMUSG00000052214.9, intron 1 of 1) protein_coding-intron (ENSMUSG00000052214.9, intron 1 of 1) 7990 ENSMUSG00000064580.1 ENSMUSG00000064580 ENSMUST00000082646 Gm25134 snRNA Interval_1084 chr1 15286223 15287554 + 0 NA promoter-TSS (ENSMUSG00000092083.4) protein_coding-promoter-TSS (ENSMUSG00000092083.4) -366 ENSMUSG00000092083.4 ENSMUSG00000092083 ENSMUST00000170146 Kcnb2 protein_coding Interval_158990 chr8 88501308 88501563 + 0 NA Intergenic Intergenic -58598 ENSMUSG00000110187.1 ENSMUSG00000110187 ENSMUST00000209918 Gm45496 TEC Interval_167362 chr9 67810453 67810786 + 0 NA Intergenic Intergenic 21711 ENSMUSG00000047990.6 ENSMUSG00000047990 ENSMUST00000054500 C2cd4a protein_coding Interval_69972 chr17 3625734 3626306 + 0 NA Intergenic Intergenic 68196 ENSMUSG00000116852.1 ENSMUSG00000116852 ENSMUST00000231344 1700102H20Rik lincRNA Interval_141320 chr6 127181195 127181999 + 0 NA intron (ENSMUSG00000097166.1, intron 1 of 1) antisense-intron (ENSMUSG00000097166.1, intron 1 of 1) 2121 ENSMUSG00000106755.1 ENSMUSG00000106755 ENSMUST00000202145 Tpi-rs11 processed_pseudogene Interval_63691 chr15 102872573 102873370 + 0 NA Intergenic Intergenic -48132 ENSMUSG00000001655.6 ENSMUSG00000001655 ENSMUST00000001700 Hoxc13 protein_coding Interval_48441 chr13 99046569 99046830 + 0 NA Intergenic Intergenic -6049 ENSMUSG00000089488.1 ENSMUSG00000089488 ENSMUST00000158863 Gm24733 misc_RNA Interval_129200 chr5 118147458 118147833 + 0 NA intron (ENSMUSG00000032867.8, intron 1 of 7) protein_coding-intron (ENSMUSG00000032867.8, intron 1 of 10) 1249 ENSMUSG00000088293.1 ENSMUSG00000088293 ENSMUST00000157668 Gm26411 snRNA Interval_723 chr1 10147737 10148355 + 0 NA intron (ENSMUSG00000067851.11, intron 4 of 4) protein_coding-intron (ENSMUSG00000067851.11, intron 32 of 37) -6345 ENSMUSG00000067851.11 ENSMUSG00000067851 ENSMUST00000186720 Arfgef1 protein_coding Interval_15553 chr10 51301965 51302535 + 0 NA Intergenic Intergenic 63421 ENSMUSG00000111880.1 ENSMUSG00000111880 ENSMUST00000218609 Gm5040 processed_pseudogene Interval_156939 chr8 62002909 62003138 + 0 NA intron (ENSMUSG00000037921.15, intron 29 of 38) protein_coding-intron (ENSMUSG00000037921.15, intron 28 of 37) 74934 ENSMUSG00000037921.15 ENSMUSG00000037921 ENSMUST00000136121 Ddx60 protein_coding Interval_42777 chr13 19382002 19382706 + 0 NA intron (ENSMUSG00000003062.13, intron 1 of 7) protein_coding-intron (ENSMUSG00000003062.13, intron 1 of 8) 13099 ENSMUSG00000105848.1 ENSMUSG00000105848 ENSMUST00000196136 Gm42683 TEC Interval_12593 chr10 3740243 3741730 + 0 NA exon (ENSMUSG00000040624.18, exon 1 of 8) protein_coding-exon (ENSMUSG00000040624.18, exon 1 of 8) -93893 ENSMUSG00000040624.18 ENSMUSG00000040624 ENSMUST00000141367 Plekhg1 protein_coding Interval_126722 chr5 92277577 92278844 + 0 NA promoter-TSS (ENSMUSG00000029413.14) protein_coding-promoter-TSS (ENSMUSG00000029413.14) -5662 ENSMUSG00000029413.14 ENSMUSG00000029413 ENSMUST00000161212 Naaa protein_coding Interval_123833 chr5 35821561 35822051 + 0 NA intron (ENSMUSG00000029095.17, intron 1 of 3) protein_coding-intron (ENSMUSG00000029095.17, intron 6 of 19) -36088 ENSMUSG00000029095.17 ENSMUSG00000029095 ENSMUST00000153529 Ablim2 protein_coding Interval_5018 chr1 84280113 84280463 + 0 NA intron (ENSMUSG00000045658.16, intron 2 of 4) protein_coding-intron (ENSMUSG00000045658.16, intron 1 of 2) 4335 ENSMUSG00000045658.16 ENSMUSG00000045658 ENSMUST00000187992 Pid1 protein_coding Interval_1413 chr1 21559078 21559368 + 0 NA intron (ENSMUSG00000028033.16, intron 2 of 12) protein_coding-intron (ENSMUSG00000028033.16, intron 2 of 13) -46167 ENSMUSG00000082935.3 ENSMUSG00000082935 ENSMUST00000119064 Gm7658 processed_pseudogene Interval_4805 chr1 79439768 79440243 + 0 NA promoter-TSS (ENSMUSG00000050711.7) protein_coding-promoter-TSS (ENSMUSG00000050711.7) 37 ENSMUSG00000050711.7 ENSMUSG00000050711 ENSMUST00000049972 Scg2 protein_coding Interval_142069 chr6 136930518 136931392 + 0 NA intron (ENSMUSG00000030220.13, intron 2 of 4) protein_coding-intron (ENSMUSG00000030220.13, intron 3 of 5) 7123 ENSMUSG00000064330.9 ENSMUSG00000064330 ENSMUST00000204382 Pde6h protein_coding Interval_52841 chr14 51008007 51008275 + 0 NA intron (ENSMUSG00000021872.8, intron 1 of 1) protein_coding-intron (ENSMUSG00000021872.8, intron 1 of 1) 390 ENSMUSG00000021872.8 ENSMUSG00000021872 ENSMUST00000022424 Rnase10 protein_coding Interval_122028 chr5 14252394 14253570 + 0 NA exon (ENSMUSG00000063531.7, exon 17 of 17) protein_coding-exon (ENSMUSG00000063531.7, exon 17 of 17) 10520 ENSMUSG00000106310.1 ENSMUSG00000106310 ENSMUST00000197397 Gm43523 TEC Interval_65675 chr16 25049138 25050622 + 0 NA Intergenic Intergenic -9759 ENSMUSG00000096960.1 ENSMUSG00000096960 ENSMUST00000181655 A230028O05Rik lincRNA Interval_1243 chr1 18013002 18013290 + 0 NA intron (ENSMUSG00000102001.1, intron 1 of 2) unprocessed_pseudogene-intron (ENSMUSG00000102001.1, intron 1 of 2) 3040 ENSMUSG00000102001.1 ENSMUSG00000102001 ENSMUST00000185773 Gm28755 unprocessed_pseudogene Interval_48922 chr13 104863116 104864147 + 0 NA promoter-TSS (ENSMUSG00000042655.5) protein_coding-promoter-TSS (ENSMUSG00000042655.5) -212 ENSMUSG00000042655.5 ENSMUSG00000042655 ENSMUST00000225969 Shisal2b protein_coding Interval_104211 chr3 60601754 60602314 + 0 NA intron (ENSMUSG00000027763.13, intron 2 of 3) protein_coding-intron (ENSMUSG00000027763.13, intron 3 of 9) -2350 ENSMUSG00000104125.1 ENSMUSG00000104125 ENSMUST00000195434 Gm37488 TEC Interval_83992 chr19 5981417 5981934 + 0 NA exon (ENSMUSG00000037451.8, exon 5 of 10) protein_coding-exon (ENSMUSG00000037451.8, exon 5 of 10) 4468 ENSMUSG00000037451.8 ENSMUSG00000037451 ENSMUST00000237046 Slc22a20 protein_coding Interval_36688 chr12 52038457 52038729 + 0 NA Intergenic Intergenic -10530 ENSMUSG00000035148.4 ENSMUSG00000035148 ENSMUST00000040161 Gpr33 protein_coding Interval_107564 chr3 108511114 108511613 + 0 NA intron (ENSMUSG00000040412.17, intron 1 of 1) protein_coding-intron (ENSMUSG00000040412.17, intron 1 of 20) 13245 ENSMUSG00000080673.1 ENSMUSG00000080673 ENSMUST00000117023 Gm23336 snRNA Interval_27711 chr11 69592031 69592696 + 0 NA TTS (ENSMUSG00000059552.13) protein_coding-TTS (ENSMUSG00000059552.13) 10799 ENSMUSG00000041329.13 ENSMUSG00000041329 ENSMUST00000153198 Atp1b2 protein_coding Interval_130461 chr5 127840732 127841741 + 0 NA intron (ENSMUSG00000034310.8, intron 5 of 8) protein_coding-intron (ENSMUSG00000034310.8, intron 5 of 8) -36097 ENSMUSG00000061331.5 ENSMUSG00000061331 ENSMUST00000109542 Gm17132 unprocessed_pseudogene Interval_6045 chr1 94858308 94858525 + 0 NA Intergenic Intergenic 61333 ENSMUSG00000100518.1 ENSMUSG00000100518 ENSMUST00000185490 4930440C22Rik lincRNA Interval_165949 chr9 54878371 54878985 + 0 NA intron (ENSMUSG00000032293.8, intron 2 of 21) protein_coding-intron (ENSMUSG00000032293.8, intron 2 of 21) -18795 ENSMUSG00000032293.8 ENSMUSG00000032293 ENSMUST00000213482 Ireb2 protein_coding Interval_74879 chr17 57038356 57039562 + 0 NA intron (ENSMUSG00000011486.14, intron 3 of 7) protein_coding-intron (ENSMUSG00000011486.14, intron 2 of 6) 2688 ENSMUSG00000011486.14 ENSMUSG00000011486 ENSMUST00000169012 Slc25a41 protein_coding Interval_134948 chr6 34039987 34042001 + 0 NA intron (ENSMUSG00000056215.13, intron 3 of 15) protein_coding-intron (ENSMUSG00000056215.13, intron 3 of 19) 11546 ENSMUSG00000056215.13 ENSMUSG00000056215 ENSMUST00000141078 Lrguk protein_coding Interval_36112 chr12 35974441 35974636 + 0 NA Intergenic Intergenic -18369 ENSMUSG00000020581.11 ENSMUSG00000020581 ENSMUST00000020898 Agr2 protein_coding Interval_117374 chr4 123315583 123315800 + 0 NA intron (ENSMUSG00000032726.12, intron 6 of 6) protein_coding-intron (ENSMUSG00000032726.12, intron 6 of 6) 7943 ENSMUSG00000076436.1 ENSMUSG00000076436 ENSMUST00000102640 Oxct2a protein_coding Interval_100579 chr2 170237929 170238195 + 0 NA Intergenic Intergenic -46973 ENSMUSG00000084013.1 ENSMUSG00000084013 ENSMUST00000118388 Gm14270 processed_pseudogene Interval_40319 chr12 103567309 103567548 + 0 NA intron (ENSMUSG00000021209.12, intron 3 of 25) protein_coding-intron (ENSMUSG00000021209.12, intron 3 of 24) -13970 ENSMUSG00000021209.12 ENSMUSG00000021209 ENSMUST00000190151 Ppp4r4 protein_coding Interval_37141 chr12 58920642 58920988 + 0 NA exon (ENSMUSG00000112531.1, exon 1 of 1) processed_pseudogene-exon (ENSMUSG00000112531.1, exon 1 of 1) 148 ENSMUSG00000112531.1 ENSMUSG00000112531 ENSMUST00000218825 Gm2649 processed_pseudogene Interval_69431 chr16 93346952 93347607 + 0 NA intron (ENSMUSG00000100277.8, intron 3 of 5) processed_transcript-intron (ENSMUSG00000100277.8, intron 1 of 2) 18111 ENSMUSG00000100277.8 ENSMUSG00000100277 ENSMUST00000231338 1810053B23Rik processed_transcript Interval_133413 chr6 4876720 4877471 + 0 NA Intergenic Intergenic 16683 ENSMUSG00000083041.2 ENSMUSG00000083041 ENSMUST00000121071 Gmfg-ps processed_pseudogene Interval_65125 chr16 19977105 19977334 + 0 NA intron (ENSMUSG00000043008.9, intron 1 of 1) protein_coding-intron (ENSMUSG00000043008.9, intron 1 of 6) -10900 ENSMUSG00000043008.9 ENSMUSG00000043008 ENSMUST00000165530 Klhl6 protein_coding Interval_67917 chr16 59517005 59517820 + 0 NA intron (ENSMUSG00000022723.16, intron 2 of 6) protein_coding-intron (ENSMUSG00000022723.16, intron 14 of 18) 12779 ENSMUSG00000022723.16 ENSMUSG00000022723 ENSMUST00000139989 Crybg3 protein_coding Interval_61139 chr15 79466595 79467386 + 0 NA Intergenic Intergenic -5391 ENSMUSG00000106626.1 ENSMUSG00000106626 ENSMUST00000104762 Gm44302 miRNA Interval_44119 chr13 41008698 41010327 + 0 NA TTS (ENSMUSG00000038683.16) protein_coding-TTS (ENSMUSG00000038683.16) -6780 ENSMUSG00000021361.7 ENSMUSG00000021361 ENSMUST00000021790 Tmem14c protein_coding Interval_36087 chr12 35451690 35452227 + 0 NA Intergenic Intergenic 10768 ENSMUSG00000065195.1 ENSMUSG00000065195 ENSMUST00000083261 Gm26071 snRNA Interval_84127 chr19 7381649 7383647 + 0 NA exon (ENSMUSG00000099923.2, exon 1 of 1) antisense-exon (ENSMUSG00000099923.2, exon 1 of 1) 111 ENSMUSG00000099923.2 ENSMUSG00000099923 ENSMUST00000186160 1700105P06Rik antisense Interval_33669 chr11 117836365 117837002 + 0 NA exon (ENSMUSG00000017718.15, exon 8 of 8) protein_coding-exon (ENSMUSG00000017718.15, exon 8 of 8) 10702 ENSMUSG00000017718.15 ENSMUSG00000017718 ENSMUST00000131268 Afmid protein_coding Interval_104274 chr3 62476037 62476495 + 0 NA intron (ENSMUSG00000027770.5, intron 19 of 24) protein_coding-intron (ENSMUSG00000027770.5, intron 19 of 24) 25867 ENSMUSG00000027770.5 ENSMUSG00000027770 ENSMUST00000192223 Dhx36 protein_coding Interval_56164 chr14 109037220 109038070 + 0 NA Intergenic Intergenic -123487 ENSMUSG00000075478.3 ENSMUSG00000075478 ENSMUST00000100322 Slitrk1 protein_coding Interval_124914 chr5 60345943 60346490 + 0 NA Intergenic Intergenic 114733 ENSMUSG00000087034.4 ENSMUSG00000087034 ENSMUST00000117165 Cbfa2t2-ps1 processed_pseudogene Interval_5239 chr1 86650385 86650958 + 0 NA Intergenic Intergenic 12470 ENSMUSG00000103609.1 ENSMUSG00000103609 ENSMUST00000192517 Gm37022 TEC Interval_44415 chr13 44718011 44718849 + 0 NA Intergenic Intergenic -12940 ENSMUSG00000038518.15 ENSMUSG00000038518 ENSMUST00000173003 Jarid2 protein_coding Interval_71715 chr17 25650894 25651376 + 0 NA intron (ENSMUSG00000002279.19, intron 6 of 6) protein_coding-intron (ENSMUSG00000002279.19, intron 6 of 10) 43085 ENSMUSG00000096451.1 ENSMUSG00000096451 ENSMUST00000180010 Gm22645 snRNA Interval_153623 chr8 3994011 3994915 + 0 NA promoter-TSS (ENSMUSG00000097657.2) processed_pseudogene-promoter-TSS (ENSMUSG00000097657.2) -163 ENSMUSG00000097657.2 ENSMUSG00000097657 ENSMUST00000181162 Gm7389 processed_pseudogene Interval_68785 chr16 86376198 86377057 + 0 NA Intergenic Intergenic 140456 ENSMUSG00000116799.1 ENSMUSG00000116799 ENSMUST00000231827 Gm32357 lincRNA Interval_150413 chr7 110252827 110253105 + 0 NA intron (ENSMUSG00000031015.8, intron 2 of 4) protein_coding-intron (ENSMUSG00000031015.8, intron 2 of 11) 28561 ENSMUSG00000109799.1 ENSMUSG00000109799 ENSMUST00000210796 Gm45515 antisense Interval_134808 chr6 31695862 31696090 + 0 NA intron (ENSMUSG00000086804.8, intron 4 of 6) lincRNA-intron (ENSMUSG00000086804.8, intron 2 of 2) 11014 ENSMUSG00000107010.1 ENSMUSG00000107010 ENSMUST00000202780 Gm43293 lincRNA Interval_121640 chr5 4161633 4161908 + 0 NA Intergenic Intergenic -30597 ENSMUSG00000053178.5 ENSMUSG00000053178 ENSMUST00000177258 Mterf1b protein_coding Interval_22236 chr11 7473506 7474908 + 0 NA Intergenic Intergenic -183833 ENSMUSG00000087637.1 ENSMUSG00000087637 ENSMUST00000149481 Gm11986 lincRNA Interval_18157 chr10 83071735 83072345 + 0 NA intron (ENSMUSG00000034612.7, intron 1 of 2) protein_coding-intron (ENSMUSG00000034612.7, intron 1 of 2) -40345 ENSMUSG00000112084.1 ENSMUSG00000112084 ENSMUST00000218071 Gm10773 TEC Interval_82902 chr18 78694712 78695160 + 0 NA Intergenic Intergenic 46808 ENSMUSG00000088733.1 ENSMUSG00000088733 ENSMUST00000158108 Gm23895 snRNA Interval_31627 chr11 101819884 101821220 + 0 NA Intergenic Intergenic -35242 ENSMUSG00000017724.14 ENSMUSG00000017724 ENSMUST00000154512 Etv4 protein_coding Interval_16680 chr10 67001267 67001559 + 0 NA Intergenic Intergenic -3662 ENSMUSG00000112925.1 ENSMUSG00000112925 ENSMUST00000218205 Gm31763 antisense Interval_127091 chr5 100217518 100217919 + 0 NA TTS (ENSMUSG00000100157.6) lincRNA-TTS (ENSMUSG00000100157.6) 7010 ENSMUSG00000100157.6 ENSMUSG00000100157 ENSMUST00000188902 2310034O05Rik lincRNA Interval_42120 chr13 8969293 8969723 + 0 NA exon (ENSMUSG00000021149.8, exon 17 of 17) protein_coding-exon (ENSMUSG00000021149.8, exon 17 of 17) 2803 ENSMUSG00000113466.1 ENSMUSG00000113466 ENSMUST00000221977 Gm48649 unprocessed_pseudogene Interval_22037 chr11 5920097 5920796 + 0 NA intron (ENSMUSG00000041798.15, intron 1 of 9) protein_coding-intron (ENSMUSG00000041798.15, intron 1 of 9) 5131 ENSMUSG00000084819.1 ENSMUSG00000084819 ENSMUST00000135132 Gm11967 antisense Interval_6523 chr1 114182661 114184048 + 0 NA Intergenic Intergenic -219220 ENSMUSG00000097648.1 ENSMUSG00000097648 ENSMUST00000180837 9330185C12Rik lincRNA Interval_86444 chr19 40557310 40557715 + 0 NA exon (ENSMUSG00000025007.13, exon 16 of 19) protein_coding-exon (ENSMUSG00000025007.13, exon 16 of 19) 3546 ENSMUSG00000096592.1 ENSMUSG00000096592 ENSMUST00000120920 Gm15801 processed_pseudogene Interval_123227 chr5 30762853 30764296 + 0 NA intron (ENSMUSG00000029168.14, intron 2 of 12) protein_coding-intron (ENSMUSG00000029168.14, intron 2 of 12) 4542 ENSMUSG00000106173.1 ENSMUSG00000106173 ENSMUST00000197835 Gm42764 sense_intronic Interval_97906 chr2 145557486 145557796 + 0 NA intron (ENSMUSG00000063873.10, intron 6 of 16) protein_coding-intron (ENSMUSG00000063873.10, intron 5 of 15) -2659 ENSMUSG00000074753.5 ENSMUSG00000074753 ENSMUST00000136794 Gm14092 antisense Interval_13435 chr10 18204006 18204552 + 0 NA intron (ENSMUSG00000071392.6, intron 1 of 3) protein_coding-intron (ENSMUSG00000071392.6, intron 1 of 20) 12056 ENSMUSG00000059554.12 ENSMUSG00000059554 ENSMUST00000052648 Ccdc28a protein_coding Interval_154138 chr8 12992299 12993006 + 0 NA TTS (ENSMUSG00000031442.21) protein_coding-TTS (ENSMUSG00000031442.21) -20623 ENSMUSG00000082682.1 ENSMUSG00000082682 ENSMUST00000121154 Gm15349 processed_pseudogene Interval_152159 chr7 130264313 130267333 + 0 NA exon (ENSMUSG00000030849.18, exon 1 of 16) protein_coding-exon (ENSMUSG00000030849.18, exon 1 of 16) 432 ENSMUSG00000030849.18 ENSMUSG00000030849 ENSMUST00000208844 Fgfr2 protein_coding Interval_98937 chr2 156143614 156144805 + 0 NA promoter-TSS (ENSMUSG00000027618.17) protein_coding-promoter-TSS (ENSMUSG00000027618.17) -31 ENSMUSG00000067847.13 ENSMUSG00000067847 ENSMUST00000119950 Romo1 protein_coding Interval_16834 chr10 68995225 68995431 + 0 NA Intergenic Intergenic 38560 ENSMUSG00000112331.1 ENSMUSG00000112331 ENSMUST00000219854 Gm33035 lincRNA Interval_163163 chr9 16249187 16249377 + 0 NA intron (ENSMUSG00000074505.6, intron 2 of 25) protein_coding-intron (ENSMUSG00000074505.6, intron 1 of 24) 186113 ENSMUSG00000111652.1 ENSMUSG00000111652 ENSMUST00000215220 Gm48726 TEC Interval_20526 chr10 118504947 118505209 + 0 NA intron (ENSMUSG00000112230.2, intron 4 of 4) lincRNA-intron (ENSMUSG00000112230.2, intron 4 of 4) 50274 ENSMUSG00000112230.2 ENSMUSG00000112230 ENSMUST00000220034 Ifngas1 lincRNA Interval_54697 chr14 73416620 73416832 + 0 NA Intergenic Intergenic -47602 ENSMUSG00000022108.8 ENSMUSG00000022108 ENSMUST00000228637 Itm2b protein_coding Interval_81841 chr18 65192374 65193219 + 0 NA intron (ENSMUSG00000024589.18, intron 18 of 28) protein_coding-intron (ENSMUSG00000024589.18, intron 19 of 29) -51491 ENSMUSG00000118017.1 ENSMUSG00000118017 ENSMUST00000235231 Gm29966 lincRNA Interval_369 chr1 4645248 4645875 + 0 NA Intergenic Intergenic 35090 ENSMUSG00000102735.1 ENSMUSG00000102735 ENSMUST00000192738 Gm7369 processed_pseudogene Interval_50863 chr14 20299606 20300233 + 0 NA promoter-TSS (ENSMUSG00000021809.10) protein_coding-promoter-TSS (ENSMUSG00000021809.10) -11510 ENSMUSG00000021809.10 ENSMUSG00000021809 ENSMUST00000225728 Nudt13 protein_coding Interval_21896 chr11 5051837 5052928 + 0 NA Intergenic Intergenic -6584 ENSMUSG00000034209.4 ENSMUSG00000034209 ENSMUST00000126974 Rasl10a protein_coding Interval_154657 chr8 22397849 22399690 + 0 NA promoter-TSS (ENSMUSG00000031482.9) protein_coding-promoter-TSS (ENSMUSG00000031482.9) 48 ENSMUSG00000099825.1 ENSMUSG00000099825 ENSMUST00000190830 1810012K16Rik lincRNA Interval_7169 chr1 127425038 127425460 + 0 NA intron (ENSMUSG00000036155.13, intron 10 of 15) protein_coding-intron (ENSMUSG00000036155.13, intron 12 of 17) 18473 ENSMUSG00000103390.1 ENSMUSG00000103390 ENSMUST00000195573 Gm38301 TEC Interval_71486 chr17 24087861 24088950 + 0 NA intron (ENSMUSG00000024122.16, intron 3 of 3) protein_coding-intron (ENSMUSG00000024122.16, intron 10 of 13) 1541 ENSMUSG00000117523.1 ENSMUSG00000117523 ENSMUST00000234317 Gm50071 antisense Interval_17191 chr10 74674781 74675752 + 0 NA Intergenic Intergenic -145456 ENSMUSG00000112686.1 ENSMUSG00000112686 ENSMUST00000218638 Gm7034 processed_pseudogene Interval_65422 chr16 22248539 22249070 + 0 NA exon (ENSMUSG00000022858.16, exon 1 of 1) protein_coding-exon (ENSMUSG00000022858.16, exon 1 of 1) 4636 ENSMUSG00000116761.1 ENSMUSG00000116761 ENSMUST00000232582 Gm36796 processed_pseudogene Interval_151098 chr7 118542380 118542977 + 0 NA intron (ENSMUSG00000042246.5, intron 13 of 15) protein_coding-intron (ENSMUSG00000042246.5, intron 13 of 15) -9381 ENSMUSG00000030652.11 ENSMUSG00000030652 ENSMUST00000127700 Coq7 protein_coding Interval_125227 chr5 65525338 65526583 + 0 NA intron (ENSMUSG00000037822.12, intron 1 of 2) protein_coding-intron (ENSMUSG00000037822.12, intron 1 of 1) 9800 ENSMUSG00000105601.1 ENSMUSG00000105601 ENSMUST00000199296 Gm42725 TEC Interval_79566 chr18 33799322 33799740 + 0 NA promoter-TSS (ENSMUSG00000024376.7) protein_coding-promoter-TSS (ENSMUSG00000024376.7) 4367 ENSMUSG00000092819.1 ENSMUSG00000092819 ENSMUST00000175078 Gm23639 snoRNA Interval_69389 chr16 92631735 92632357 + 0 NA intron (ENSMUSG00000022952.17, intron 3 of 4) protein_coding-intron (ENSMUSG00000022952.17, intron 6 of 7) 19232 ENSMUSG00000097139.3 ENSMUSG00000097139 ENSMUST00000180989 Gm26626 antisense Interval_12415 chr1 193207910 193208829 + 0 NA exon (ENSMUSG00000026639.18, exon 1 of 1) protein_coding-intron (ENSMUSG00000026639.18, intron 1 of 2) 644 ENSMUSG00000026639.18 ENSMUSG00000026639 ENSMUST00000161526 Lamb3 protein_coding Interval_135451 chr6 39409092 39409464 + 0 NA intron (ENSMUSG00000029922.15, intron 2 of 3) protein_coding-intron (ENSMUSG00000029922.15, intron 2 of 7) -4548 ENSMUSG00000029922.15 ENSMUSG00000029922 ENSMUST00000114822 Mkrn1 protein_coding Interval_78701 chr18 18050097 18050991 + 0 NA Intergenic Intergenic -49016 ENSMUSG00000093274.1 ENSMUSG00000093274 ENSMUST00000175533 Gm26235 miRNA Interval_108687 chr3 130094976 130095720 + 0 NA Intergenic Intergenic 14569 ENSMUSG00000106072.1 ENSMUSG00000106072 ENSMUST00000199883 Gm42663 processed_pseudogene Interval_93873 chr2 77815907 77817420 + 0 NA TTS (ENSMUSG00000027016.17) protein_coding-TTS (ENSMUSG00000027016.17) -23953 ENSMUSG00000087102.1 ENSMUSG00000087102 ENSMUST00000154297 Gm13661 lincRNA Interval_76418 chr17 80054089 80054571 + 0 NA exon (ENSMUSG00000117518.1, exon 1 of 1) processed_pseudogene-exon (ENSMUSG00000117518.1, exon 1 of 1) 304 ENSMUSG00000117518.1 ENSMUSG00000117518 ENSMUST00000234039 Gpx4-ps1 processed_pseudogene Interval_173771 chrX 103952771 103953295 + 0 NA Intergenic Intergenic -26049 ENSMUSG00000081689.1 ENSMUSG00000081689 ENSMUST00000120293 Gm9166 processed_pseudogene Interval_51499 chr14 28533537 28534583 + 0 NA Intergenic Intergenic -22668 ENSMUSG00000097002.1 ENSMUSG00000097002 ENSMUST00000180668 Gm2670 antisense Interval_10949 chr1 177460244 177461013 + 0 NA exon (ENSMUSG00000102432.1, exon 3 of 3) processed_transcript-exon (ENSMUSG00000102432.1, exon 3 of 3) 446 ENSMUSG00000102432.1 ENSMUSG00000102432 ENSMUST00000192282 Gm29856 processed_transcript Interval_148248 chr7 80078767 80079203 + 0 NA intron (ENSMUSG00000048897.15, intron 1 of 1) protein_coding-intron (ENSMUSG00000048897.15, intron 1 of 4) -3738 ENSMUSG00000108714.1 ENSMUSG00000108714 ENSMUST00000206022 Gm21057 antisense Interval_138972 chr6 93922803 93924230 + 0 NA intron (ENSMUSG00000045095.16, intron 2 of 24) protein_coding-intron (ENSMUSG00000045095.16, intron 2 of 21) -11012 ENSMUSG00000045095.16 ENSMUSG00000045095 ENSMUST00000203034 Magi1 protein_coding Interval_31700 chr11 102331403 102332319 + 0 NA Intergenic Intergenic -12765 ENSMUSG00000020923.17 ENSMUSG00000020923 ENSMUST00000128016 Ubtf protein_coding Interval_174827 chrX 168639727 168639971 + 0 NA Intergenic Intergenic 19169 ENSMUSG00000031358.17 ENSMUSG00000031358 ENSMUST00000129860 Msl3 protein_coding Interval_56782 chr14 122064446 122065186 + 0 NA intron (ENSMUSG00000115121.1, intron 4 of 4) lincRNA-intron (ENSMUSG00000115121.1, intron 4 of 4) 26410 ENSMUSG00000115121.1 ENSMUSG00000115121 ENSMUST00000226723 Gm49236 lincRNA Interval_8508 chr1 140377329 140377523 + 0 NA intron (ENSMUSG00000052726.16, intron 7 of 27) protein_coding-intron (ENSMUSG00000052726.16, intron 7 of 26) 110939 ENSMUSG00000102698.1 ENSMUSG00000102698 ENSMUST00000195546 Gm37777 TEC Interval_138276 chr6 86805745 86807187 + 0 NA Intergenic Intergenic -12902 ENSMUSG00000029994.17 ENSMUSG00000029994 ENSMUST00000129772 Anxa4 protein_coding Interval_123322 chr5 31427510 31427696 + 0 NA Intergenic Intergenic -23221 ENSMUSG00000106866.1 ENSMUSG00000106866 ENSMUST00000200894 Gm43659 processed_pseudogene Interval_129952 chr5 123276040 123276246 + 0 NA intron (ENSMUSG00000029442.18, intron 2 of 11) protein_coding-intron (ENSMUSG00000029442.18, intron 7 of 21) -1985 ENSMUSG00000029442.18 ENSMUSG00000029442 ENSMUST00000125979 Wdr66 protein_coding Interval_20658 chr10 120074558 120075072 + 0 NA intron (ENSMUSG00000034813.18, intron 14 of 14) protein_coding-intron (ENSMUSG00000034813.18, intron 22 of 22) 38050 ENSMUSG00000020228.11 ENSMUSG00000020228 ENSMUST00000154501 Helb protein_coding Interval_96896 chr2 129269103 129270575 + 0 NA intron (ENSMUSG00000048327.6, intron 8 of 8) protein_coding-intron (ENSMUSG00000048327.6, intron 8 of 8) 23463 ENSMUSG00000085485.1 ENSMUSG00000085485 ENSMUST00000141964 Gm14024 antisense Interval_36732 chr12 52671422 52671992 + 0 NA Intergenic Intergenic 64037 ENSMUSG00000112412.1 ENSMUSG00000112412 ENSMUST00000218346 Gm35239 lincRNA Interval_49589 chr13 113262617 113262999 + 0 NA Intergenic Intergenic -30351 ENSMUSG00000021763.17 ENSMUSG00000021763 ENSMUST00000135096 BC067074 protein_coding Interval_94388 chr2 90678300 90679816 + 0 NA exon (ENSMUSG00000051329.13, exon 2 of 37) protein_coding-exon (ENSMUSG00000051329.13, exon 2 of 37) -6113 ENSMUSG00000051329.13 ENSMUSG00000051329 ENSMUST00000126503 Nup160 protein_coding Interval_66187 chr16 32214980 32215641 + 0 NA Intergenic Intergenic 28545 ENSMUSG00000080440.1 ENSMUSG00000080440 ENSMUST00000116790 Gm25848 snoRNA Interval_137064 chr6 67105302 67106256 + 0 NA Intergenic Intergenic -9898 ENSMUSG00000097603.3 ENSMUSG00000097603 ENSMUST00000054470 A430010J10Rik processed_transcript Interval_163384 chr9 21191647 21192184 + 0 NA exon (ENSMUSG00000032177.17, exon 2 of 14) protein_coding-exon (ENSMUSG00000032177.17, exon 2 of 14) 7814 ENSMUSG00000032177.17 ENSMUSG00000032177 ENSMUST00000003395 Pde4a protein_coding Interval_75270 chr17 65590106 65590447 + 0 NA intron (ENSMUSG00000024091.9, intron 3 of 5) protein_coding-intron (ENSMUSG00000024091.9, intron 4 of 5) 4694 ENSMUSG00000024091.9 ENSMUSG00000024091 ENSMUST00000232686 Vapa protein_coding Interval_55668 chr14 98629199 98630027 + 0 NA Intergenic Intergenic 5423 ENSMUSG00000096444.1 ENSMUSG00000096444 ENSMUST00000180098 Gm26139 snRNA Interval_10590 chr1 172064572 172064862 + 0 NA Intergenic Intergenic -7144 ENSMUSG00000051251.3 ENSMUSG00000051251 ENSMUST00000059794 Nhlh1 protein_coding Interval_27361 chr11 66968663 66968999 + 0 NA Intergenic Intergenic 12193 ENSMUSG00000085683.2 ENSMUSG00000085683 ENSMUST00000127166 Tmem238l protein_coding Interval_4723 chr1 77718973 77719298 + 0 NA Intergenic Intergenic 148463 ENSMUSG00000101506.1 ENSMUSG00000101506 ENSMUST00000185671 Gm28385 processed_pseudogene Interval_138215 chr6 86370878 86372144 + 0 NA promoter-TSS (ENSMUSG00000057278.8) protein_coding-promoter-TSS (ENSMUSG00000057278.8) -93 ENSMUSG00000057278.8 ENSMUSG00000057278 ENSMUST00000204768 Snrpg protein_coding Interval_67614 chr16 52697803 52698176 + 0 NA Intergenic Intergenic -116581 ENSMUSG00000116880.1 ENSMUSG00000116880 ENSMUST00000232449 Gm49634 processed_pseudogene Interval_10527 chr1 171485316 171485597 + 0 NA Intergenic Intergenic 17707 ENSMUSG00000094668.1 ENSMUSG00000094668 ENSMUST00000083099 Gm24871 snRNA Interval_101700 chr3 9008281 9009327 + 0 NA Intergenic Intergenic -4326 ENSMUSG00000027506.15 ENSMUSG00000027506 ENSMUST00000155450 Tpd52 protein_coding Interval_92288 chr2 58417463 58417766 + 0 NA intron (ENSMUSG00000026836.15, intron 10 of 10) protein_coding-intron (ENSMUSG00000026836.15, intron 10 of 10) -52502 ENSMUSG00000091922.1 ENSMUSG00000091922 ENSMUST00000167423 Gm17409 TEC Interval_68167 chr16 66311446 66312313 + 0 NA Intergenic Intergenic 57093 ENSMUSG00000095506.1 ENSMUSG00000095506 ENSMUST00000179254 Gm22448 snRNA Interval_171130 chr9 114680917 114681138 + 0 NA Intergenic Intergenic -7763 ENSMUSG00000032435.9 ENSMUSG00000032435 ENSMUST00000047404 Dync1li1 protein_coding Interval_109005 chr3 134728374 134728692 + 0 NA Intergenic Intergenic -97768 ENSMUSG00000097031.2 ENSMUSG00000097031 ENSMUST00000180764 Gm26820 lincRNA Interval_100948 chr2 173578025 173578851 + 0 NA promoter-TSS (ENSMUSG00000027517.14) protein_coding-promoter-TSS (ENSMUSG00000027517.14) -158 ENSMUSG00000027517.14 ENSMUSG00000027517 ENSMUST00000147693 Ankrd60 protein_coding Interval_162677 chr9 7761986 7762299 + 0 NA Intergenic Intergenic -2023 ENSMUSG00000050912.15 ENSMUSG00000050912 ENSMUST00000154371 Tmem123 protein_coding Interval_164328 chr9 35368965 35369343 + 0 NA Intergenic Intergenic -6041 ENSMUSG00000103259.1 ENSMUSG00000103259 ENSMUST00000193707 2610105M22Rik TEC Interval_75703 chr17 70762145 70762922 + 0 NA intron (ENSMUSG00000003279.17, intron 5 of 9) protein_coding-intron (ENSMUSG00000003279.17, intron 10 of 14) -6951 ENSMUSG00000097282.1 ENSMUSG00000097282 ENSMUST00000181546 5031415H12Rik antisense Interval_102855 chr3 32317252 32318355 + 0 NA Intergenic Intergenic 48211 ENSMUSG00000027663.12 ENSMUSG00000027663 ENSMUST00000195055 Zmat3 protein_coding Interval_162552 chr9 4234923 4235338 + 0 NA Intergenic Intergenic -6001 ENSMUSG00000110461.1 ENSMUSG00000110461 ENSMUST00000212700 Gm45860 processed_pseudogene Interval_166682 chr9 61890807 61891001 + 0 NA Intergenic Intergenic 23638 ENSMUSG00000007892.8 ENSMUSG00000007892 ENSMUST00000008036 Rplp1 protein_coding Interval_58083 chr15 27747533 27748586 + 0 NA exon (ENSMUSG00000022263.10, exon 48 of 57) protein_coding-exon (ENSMUSG00000022263.10, exon 48 of 57) -87907 ENSMUSG00000056069.10 ENSMUSG00000056069 ENSMUST00000232492 Otulinl protein_coding Interval_65847 chr16 29764336 29764584 + 0 NA Intergenic Intergenic -10148 ENSMUSG00000116814.1 ENSMUSG00000116814 ENSMUST00000232037 Gm49636 lincRNA Interval_170842 chr9 111092578 111093536 + 0 NA Intergenic Intergenic 17663 ENSMUSG00000088296.1 ENSMUSG00000088296 ENSMUST00000157671 Gm26409 snRNA Interval_156801 chr8 60517751 60519085 + 0 NA intron (ENSMUSG00000057228.6, intron 3 of 4) protein_coding-intron (ENSMUSG00000057228.6, intron 3 of 12) 12303 ENSMUSG00000057228.6 ENSMUSG00000057228 ENSMUST00000209338 Aadat protein_coding Interval_162564 chr9 4432155 4432324 + 0 NA intron (ENSMUSG00000025892.16, intron 14 of 16) protein_coding-intron (ENSMUSG00000025892.16, intron 15 of 16) 23784 ENSMUSG00000092896.2 ENSMUSG00000092896 ENSMUST00000175155 Gm23811 miRNA Interval_67625 chr16 53659241 53659892 + 0 NA Intergenic Intergenic -39499 ENSMUSG00000116629.1 ENSMUSG00000116629 ENSMUST00000231266 Gm49638 processed_pseudogene Interval_18647 chr10 88777548 88778230 + 0 NA promoter-TSS (ENSMUSG00000004356.8) protein_coding-promoter-TSS (ENSMUSG00000004356.8) -46788 ENSMUSG00000069540.4 ENSMUSG00000069540 ENSMUST00000092231 Gm4925 transcribed_processed_pseudogene Interval_81032 chr18 53175925 53177104 + 0 NA intron (ENSMUSG00000034484.8, intron 1 of 6) protein_coding-intron (ENSMUSG00000034484.8, intron 1 of 14) 125 ENSMUSG00000034484.8 ENSMUSG00000034484 ENSMUST00000236111 Snx2 protein_coding Interval_100979 chr2 173785383 173785573 + 0 NA Intergenic Intergenic 17278 ENSMUSG00000054455.5 ENSMUSG00000054455 ENSMUST00000154306 Vapb protein_coding Interval_86962 chr19 45229457 45230339 + 0 NA Intergenic Intergenic 5914 ENSMUSG00000025216.9 ENSMUSG00000025216 ENSMUST00000099401 Lbx1 protein_coding Interval_139916 chr6 112702116 112702884 + 0 NA Intergenic Intergenic -5867 ENSMUSG00000030254.16 ENSMUSG00000030254 ENSMUST00000135092 Rad18 protein_coding Interval_130847 chr5 131292157 131293194 + 0 NA intron (ENSMUSG00000034040.16, intron 1 of 1) protein_coding-intron (ENSMUSG00000034040.16, intron 1 of 10) 15403 ENSMUSG00000034040.16 ENSMUSG00000034040 ENSMUST00000162966 Galnt17 protein_coding Interval_20915 chr10 121978836 121979113 + 0 NA intron (ENSMUSG00000020121.15, intron 1 of 3) protein_coding-intron (ENSMUSG00000020121.15, intron 1 of 21) 68341 ENSMUSG00000020121.15 ENSMUSG00000020121 ENSMUST00000162710 Srgap1 protein_coding Interval_43700 chr13 35330691 35331383 + 0 NA Intergenic Intergenic -37760 ENSMUSG00000077601.1 ENSMUSG00000077601 ENSMUST00000104413 Gm22674 snoRNA Interval_13270 chr10 13868370 13869460 + 0 NA promoter-TSS (ENSMUSG00000019806.13) protein_coding-promoter-TSS (ENSMUSG00000019806.13) -86 ENSMUSG00000019806.13 ENSMUSG00000019806 ENSMUST00000162869 Aig1 protein_coding Interval_130956 chr5 134253862 134254049 + 0 NA intron (ENSMUSG00000060261.15, intron 18 of 33) protein_coding-intron (ENSMUSG00000060261.15, intron 19 of 34) 16781 ENSMUSG00000107000.1 ENSMUSG00000107000 ENSMUST00000201715 Gm43481 TEC Interval_174253 chrX 141919412 141919931 + 0 NA Intergenic Intergenic -17216 ENSMUSG00000086907.1 ENSMUSG00000086907 ENSMUST00000145916 Gm15298 lincRNA Interval_2227 chr1 37212277 37213315 + 0 NA Intergenic Intergenic -5583 ENSMUSG00000026114.14 ENSMUSG00000026114 ENSMUST00000027288 Cnga3 protein_coding Interval_1261 chr1 18531033 18531623 + 0 NA Intergenic Intergenic -177100 ENSMUSG00000101306.1 ENSMUSG00000101306 ENSMUST00000189030 Gm5252 processed_pseudogene Interval_26448 chr11 57920181 57920520 + 0 NA Intergenic Intergenic 28735 ENSMUSG00000083657.1 ENSMUSG00000083657 ENSMUST00000117266 Gm12245 processed_pseudogene Interval_28425 chr11 75794549 75796923 + 0 NA exon (ENSMUSG00000020848.7, exon 1 of 9) protein_coding-exon (ENSMUSG00000020848.7, exon 1 of 9) 313 ENSMUSG00000020848.7 ENSMUSG00000020848 ENSMUST00000021209 Doc2b protein_coding Interval_107819 chr3 115815112 115815372 + 0 NA Intergenic Intergenic -72610 ENSMUSG00000033554.17 ENSMUSG00000033554 ENSMUST00000199970 Dph5 protein_coding Interval_108626 chr3 129637220 129637630 + 0 NA exon (ENSMUSG00000041220.10, exon 5 of 5) protein_coding-exon (ENSMUSG00000041220.10, exon 5 of 5) 46816 ENSMUSG00000092701.1 ENSMUSG00000092701 ENSMUST00000174960 Gm24515 miRNA Interval_135688 chr6 43381931 43382645 + 0 NA intron (ENSMUSG00000029735.17, intron 6 of 6) protein_coding-intron (ENSMUSG00000029735.17, intron 8 of 8) 8483 ENSMUSG00000084325.2 ENSMUSG00000084325 ENSMUST00000120824 Gm15550 processed_pseudogene Interval_70661 chr17 12879761 12880651 + 0 NA Intergenic Intergenic 4172 ENSMUSG00000059408.3 ENSMUSG00000059408 ENSMUST00000075296 Mrgprh protein_coding Interval_141434 chr6 128273830 128274063 + 0 NA intron (ENSMUSG00000030353.15, intron 1 of 1) protein_coding-intron (ENSMUSG00000030353.15, intron 1 of 11) -20156 ENSMUSG00000095262.2 ENSMUSG00000095262 ENSMUST00000179119 Gm21893 processed_pseudogene Interval_152144 chr7 130085582 130086020 + 0 NA Intergenic Intergenic 50707 ENSMUSG00000065763.1 ENSMUSG00000065763 ENSMUST00000083829 Gm23847 snRNA Interval_120468 chr4 148816401 148817192 + 0 NA intron (ENSMUSG00000028977.17, intron 1 of 1) protein_coding-intron (ENSMUSG00000028977.17, intron 1 of 15) 97528 ENSMUSG00000086766.1 ENSMUSG00000086766 ENSMUST00000151967 Gm15969 antisense Interval_108946 chr3 133532332 133534731 + 0 NA intron (ENSMUSG00000040943.12, intron 1 of 2) protein_coding-intron (ENSMUSG00000040943.12, intron 1 of 10) -11566 ENSMUSG00000105085.1 ENSMUSG00000105085 ENSMUST00000199268 Gm42567 antisense Interval_10889 chr1 176643931 176645224 + 0 NA Intergenic Intergenic -2019 ENSMUSG00000103471.1 ENSMUSG00000103471 ENSMUST00000193453 Gm17966 processed_pseudogene Interval_29244 chr11 82174558 82175304 + 0 NA Intergenic Intergenic 59746 ENSMUSG00000009185.2 ENSMUSG00000009185 ENSMUST00000009329 Ccl8 protein_coding Interval_116883 chr4 117955725 117957320 + 0 NA intron (ENSMUSG00000028538.12, intron 5 of 5) protein_coding-intron (ENSMUSG00000028538.12, intron 9 of 11) -18514 ENSMUSG00000086554.1 ENSMUSG00000086554 ENSMUST00000146982 9530034E10Rik antisense Interval_5379 chr1 88154787 88155715 + 0 NA TTS (ENSMUSG00000082677.1) unprocessed_pseudogene-TTS (ENSMUSG00000082677.1) 1463 ENSMUSG00000082677.1 ENSMUSG00000082677 ENSMUST00000117057 Gm15371 unprocessed_pseudogene Interval_162653 chr9 7489217 7489866 + 0 NA Intergenic Intergenic -12811 ENSMUSG00000047562.3 ENSMUSG00000047562 ENSMUST00000034488 Mmp10 protein_coding Interval_14364 chr10 31542321 31542881 + 0 NA intron (ENSMUSG00000063760.9, intron 1 of 5) protein_coding-intron (ENSMUSG00000063760.9, intron 1 of 5) 14839 ENSMUSG00000112338.1 ENSMUSG00000112338 ENSMUST00000219494 Gm47693 TEC Interval_163414 chr9 21337383 21338864 + 0 NA intron (ENSMUSG00000057193.8, intron 1 of 21) protein_coding-intron (ENSMUSG00000057193.8, intron 1 of 21) 17425 ENSMUSG00000057193.8 ENSMUSG00000057193 ENSMUST00000213535 Slc44a2 protein_coding Interval_56922 chr14 123513181 123513816 + 0 NA intron (ENSMUSG00000000197.8, intron 9 of 29) protein_coding-intron (ENSMUSG00000000197.8, intron 9 of 43) 113646 ENSMUSG00000000197.8 ENSMUSG00000000197 ENSMUST00000228766 Nalcn protein_coding Interval_101300 chr2 180246470 180246824 + 0 NA Intergenic Intergenic -10732 ENSMUSG00000039001.12 ENSMUSG00000039001 ENSMUST00000145043 Rps21 protein_coding Interval_49064 chr13 107661319 107661760 + 0 NA Intergenic Intergenic -25858 ENSMUSG00000102000.6 ENSMUSG00000102000 ENSMUST00000188490 1700006H21Rik lincRNA Interval_36551 chr12 49382902 49385703 + 0 NA promoter-TSS (ENSMUSG00000089922.2) protein_coding-promoter-TSS (ENSMUSG00000089922.2) -872 ENSMUSG00000089922.2 ENSMUSG00000089922 ENSMUST00000110746 Gm43517 protein_coding Interval_114092 chr4 63384064 63384324 + 0 NA intron (ENSMUSG00000039158.11, intron 6 of 21) protein_coding-intron (ENSMUSG00000039158.11, intron 6 of 21) 2836 ENSMUSG00000086953.1 ENSMUSG00000086953 ENSMUST00000144095 Aknaos antisense Interval_15032 chr10 42070812 42073630 + 0 NA Intergenic Intergenic -16915 ENSMUSG00000085666.3 ENSMUSG00000085666 ENSMUST00000121229 Tdg-ps2 processed_pseudogene Interval_148938 chr7 90188731 90188927 + 0 NA promoter-TSS (ENSMUSG00000039361.11) protein_coding-promoter-TSS (ENSMUSG00000039361.11) 2902 ENSMUSG00000109005.1 ENSMUSG00000109005 ENSMUST00000207822 Gm45221 TEC Interval_113099 chr4 48223026 48223264 + 0 NA intron (ENSMUSG00000028343.10, intron 4 of 11) protein_coding-intron (ENSMUSG00000028343.10, intron 4 of 11) -9930 ENSMUSG00000087844.1 ENSMUSG00000087844 ENSMUST00000157219 Mir1958 miRNA Interval_112818 chr4 45279274 45280677 + 0 NA intron (ENSMUSG00000035615.12, intron 15 of 15) protein_coding-intron (ENSMUSG00000035615.12, intron 15 of 15) -34123 ENSMUSG00000035601.9 ENSMUSG00000035601 ENSMUST00000145756 Trmt10b protein_coding Interval_118472 chr4 131893579 131893993 + 0 NA intron (ENSMUSG00000028911.16, intron 5 of 5) protein_coding-intron (ENSMUSG00000028911.16, intron 3 of 5) 9491 ENSMUSG00000028911.16 ENSMUSG00000028911 ENSMUST00000030743 Srsf4 protein_coding Interval_17017 chr10 70449027 70449861 + 0 NA intron (ENSMUSG00000043259.15, intron 3 of 10) protein_coding-intron (ENSMUSG00000043259.15, intron 2 of 13) 8738 ENSMUSG00000043259.15 ENSMUSG00000043259 ENSMUST00000062883 Fam13c protein_coding Interval_27438 chr11 67689843 67690712 + 0 NA intron (ENSMUSG00000049928.15, intron 8 of 9) protein_coding-intron (ENSMUSG00000049928.15, intron 8 of 9) -5049 ENSMUSG00000020907.1 ENSMUSG00000020907 ENSMUST00000021290 Rcvrn protein_coding Interval_96678 chr2 127092201 127093855 + 0 NA TTS (ENSMUSG00000001999.15) protein_coding-TTS (ENSMUSG00000001999.15) 22363 ENSMUSG00000001999.15 ENSMUSG00000001999 ENSMUST00000142737 Blvra protein_coding Interval_152838 chr7 138638557 138638744 + 0 NA Intergenic Intergenic -62253 ENSMUSG00000109802.1 ENSMUSG00000109802 ENSMUST00000211166 Gm30808 lincRNA Interval_149037 chr7 92580182 92581337 + 0 NA TTS (ENSMUSG00000041343.19) protein_coding-TTS (ENSMUSG00000041343.19) 19610 ENSMUSG00000030613.13 ENSMUSG00000030613 ENSMUST00000085017 Ccdc90b protein_coding Interval_107469 chr3 107917208 107918511 + 0 NA Intergenic Intergenic -1803 ENSMUSG00000082720.1 ENSMUSG00000082720 ENSMUST00000119364 Gm12489 processed_pseudogene Interval_163223 chr9 18596700 18597190 + 0 NA intron (ENSMUSG00000109564.1, intron 11 of 77) protein_coding-intron (ENSMUSG00000109564.1, intron 13 of 79) 22332 ENSMUSG00000084743.1 ENSMUSG00000084743 ENSMUST00000122794 Gm25295 misc_RNA Interval_74290 chr17 48585663 48586304 + 0 NA Intergenic Intergenic 29250 ENSMUSG00000117019.1 ENSMUSG00000117019 ENSMUST00000233471 Gm49896 lincRNA Interval_39651 chr12 91786285 91786750 + 0 NA promoter-TSS (ENSMUSG00000020961.15) protein_coding-promoter-TSS (ENSMUSG00000020961.15) 5157 ENSMUSG00000077096.1 ENSMUSG00000077096 ENSMUST00000103908 Gm22015 miRNA Interval_151907 chr7 127465078 127466974 + 0 NA intron (ENSMUSG00000030822.15, intron 1 of 2) protein_coding-intron (ENSMUSG00000030822.15, intron 1 of 2) -9493 ENSMUSG00000030822.15 ENSMUSG00000030822 ENSMUST00000206915 Prr14 protein_coding Interval_161487 chr8 120683649 120684005 + 0 NA intron (ENSMUSG00000092329.1, intron 1 of 15) protein_coding-intron (ENSMUSG00000092329.1, intron 1 of 15) -1572 ENSMUSG00000104484.1 ENSMUSG00000104484 ENSMUST00000193913 Gm33142 TEC Interval_117947 chr4 127249727 127250530 + 0 NA Intergenic Intergenic 6344 ENSMUSG00000042380.8 ENSMUSG00000042380 ENSMUST00000142029 Smim12 protein_coding Interval_162438 chr8 128720787 128721039 + 0 NA intron (ENSMUSG00000025809.15, intron 10 of 14) protein_coding-intron (ENSMUSG00000025809.15, intron 11 of 15) -3420 ENSMUSG00000025809.15 ENSMUSG00000025809 ENSMUST00000149116 Itgb1 protein_coding Interval_174489 chrX 153332383 153332567 + 0 NA intron (ENSMUSG00000041649.13, intron 2 of 6) protein_coding-intron (ENSMUSG00000041649.13, intron 2 of 6) 71595 ENSMUSG00000080743.2 ENSMUSG00000080743 ENSMUST00000122032 Gm7150 processed_pseudogene Interval_137968 chr6 83807350 83807546 + 0 NA exon (ENSMUSG00000045896.14, exon 5 of 5) protein_coding-exon (ENSMUSG00000045896.14, exon 5 of 5) 11206 ENSMUSG00000034744.13 ENSMUSG00000034744 ENSMUST00000205599 Nagk protein_coding Interval_11180 chr1 179915563 179915947 + 0 NA Intergenic Intergenic 9656 ENSMUSG00000104418.1 ENSMUSG00000104418 ENSMUST00000193272 Gm37070 processed_pseudogene Interval_79543 chr18 33394435 33395571 + 0 NA Intergenic Intergenic -10048 ENSMUSG00000117730.1 ENSMUSG00000117730 ENSMUST00000237135 Gm5503 processed_pseudogene Interval_51690 chr14 31403659 31404717 + 0 NA intron (ENSMUSG00000021892.14, intron 3 of 10) protein_coding-intron (ENSMUSG00000021892.14, intron 3 of 8) 3197 ENSMUSG00000021892.14 ENSMUSG00000021892 ENSMUST00000147586 Sh3bp5 protein_coding Interval_68611 chr16 81229055 81229249 + 0 NA intron (ENSMUSG00000022762.18, intron 1 of 8) protein_coding-intron (ENSMUSG00000022762.18, intron 1 of 15) 32863 ENSMUSG00000084671.1 ENSMUSG00000084671 ENSMUST00000122722 Gm26023 misc_RNA Interval_28680 chr11 77720134 77721875 + 0 NA exon (ENSMUSG00000000724.10, exon 4 of 6) protein_coding-exon (ENSMUSG00000000724.10, exon 4 of 6) 830 ENSMUSG00000000724.10 ENSMUSG00000000724 ENSMUST00000078623 Cryba1 protein_coding Interval_11976 chr1 187990021 187990368 + 0 NA intron (ENSMUSG00000026610.13, intron 3 of 3) protein_coding-intron (ENSMUSG00000026610.13, intron 2 of 7) 18796 ENSMUSG00000103577.1 ENSMUSG00000103577 ENSMUST00000195397 9330162B11Rik antisense Interval_125279 chr5 65902005 65903043 + 0 NA Intergenic Intergenic -9100 ENSMUSG00000107254.1 ENSMUSG00000107254 ENSMUST00000201871 Gm43769 TEC Interval_173070 chrX 70369489 70369930 + 0 NA Intergenic Intergenic -8618 ENSMUSG00000035847.15 ENSMUSG00000035847 ENSMUST00000130519 Ids protein_coding Interval_2049 chr1 36106034 36106508 + 0 NA exon (ENSMUSG00000045216.7, exon 2 of 2) protein_coding-exon (ENSMUSG00000045216.7, exon 2 of 2) 175 ENSMUSG00000104523.1 ENSMUSG00000104523 ENSMUST00000192656 Gm37335 antisense Interval_80103 chr18 37542306 37544401 + 0 NA intron (ENSMUSG00000103125.1, intron 1 of 2) protein_coding-intron (ENSMUSG00000103458.1, intron 1 of 3) 25482 ENSMUSG00000073591.4 ENSMUSG00000073591 ENSMUST00000097609 Pcdhb22 protein_coding Interval_45288 chr13 54054905 54056257 + 0 NA promoter-TSS (ENSMUSG00000021478.6) protein_coding-promoter-TSS (ENSMUSG00000021478.6) -801 ENSMUSG00000021478.6 ENSMUSG00000021478 ENSMUST00000222706 Drd1 protein_coding Interval_121865 chr5 8984386 8984609 + 0 NA intron (ENSMUSG00000003623.4, intron 6 of 17) protein_coding-intron (ENSMUSG00000003623.4, intron 6 of 17) 12545 ENSMUSG00000003623.4 ENSMUSG00000003623 ENSMUST00000157024 Crot protein_coding Interval_65508 chr16 22912295 22912542 + 0 NA Intergenic Intergenic -7898 ENSMUSG00000022871.13 ENSMUSG00000022871 ENSMUST00000167399 Fetub protein_coding Interval_150181 chr7 107661174 107662096 + 0 NA intron (ENSMUSG00000036528.16, intron 3 of 5) protein_coding-intron (ENSMUSG00000036528.16, intron 3 of 24) -3676 ENSMUSG00000036528.16 ENSMUSG00000036528 ENSMUST00000208159 Ppfibp2 protein_coding Interval_121614 chr5 3911892 3912111 + 0 NA Intergenic Intergenic -18105 ENSMUSG00000040429.6 ENSMUSG00000040429 ENSMUST00000196417 Mterf1a protein_coding Interval_166440 chr9 59485528 59487238 + 0 NA promoter-TSS (ENSMUSG00000025234.11) protein_coding-promoter-TSS (ENSMUSG00000025234.11) 231 ENSMUSG00000025234.11 ENSMUSG00000025234 ENSMUST00000168982 Arih1 protein_coding Interval_48772 chr13 103030245 103030463 + 0 NA intron (ENSMUSG00000034751.17, intron 3 of 3) protein_coding-intron (ENSMUSG00000034751.17, intron 3 of 4) 66491 ENSMUSG00000034751.17 ENSMUSG00000034751 ENSMUST00000187024 Mast4 protein_coding Interval_69973 chr17 3662561 3662925 + 0 NA intron (ENSMUSG00000023802.4, intron 10 of 12) protein_coding-intron (ENSMUSG00000023802.4, intron 10 of 12) 33518 ENSMUSG00000023802.4 ENSMUSG00000023802 ENSMUST00000115800 Nox3 protein_coding Interval_43188 chr13 24955230 24956182 + 0 NA promoter-TSS (ENSMUSG00000021340.13) protein_coding-promoter-TSS (ENSMUSG00000021340.13) -6921 ENSMUSG00000021340.13 ENSMUSG00000021340 ENSMUST00000223873 Gpld1 protein_coding Interval_58172 chr15 30302178 30303274 + 0 NA intron (ENSMUSG00000022240.10, intron 1 of 2) protein_coding-intron (ENSMUSG00000022240.10, intron 1 of 22) -126118 ENSMUSG00000115073.1 ENSMUSG00000115073 ENSMUST00000226263 Gm49283 TEC Interval_124152 chr5 38689610 38689880 + 0 NA Intergenic Intergenic -4919 ENSMUSG00000046572.10 ENSMUSG00000046572 ENSMUST00000178760 Zfp518b protein_coding Interval_85823 chr19 32172119 32173277 + 0 NA intron (ENSMUSG00000040451.18, intron 3 of 10) protein_coding-intron (ENSMUSG00000040451.18, intron 5 of 9) 36575 ENSMUSG00000118064.1 ENSMUSG00000118064 ENSMUST00000235377 Gm50210 sense_intronic Interval_89939 chr2 26610570 26611750 + 0 NA intron (ENSMUSG00000092356.2, intron 3 of 6) protein_coding-intron (ENSMUSG00000092356.2, intron 3 of 6) -7234 ENSMUSG00000026922.13 ENSMUSG00000026922 ENSMUST00000154753 Agpat2 protein_coding Interval_20420 chr10 117452351 117452602 + 0 NA Intergenic Intergenic -4983 ENSMUSG00000112344.1 ENSMUSG00000112344 ENSMUST00000220189 Gm32141 lincRNA Interval_1362 chr1 20980358 20980744 + 0 NA intron (ENSMUSG00000041809.5, intron 9 of 10) protein_coding-intron (ENSMUSG00000041809.5, intron 9 of 10) 28925 ENSMUSG00000041809.5 ENSMUSG00000041809 ENSMUST00000038447 Efhc1 protein_coding Interval_154985 chr8 25496860 25497306 + 0 NA Intergenic Intergenic -9498 ENSMUSG00000110063.1 ENSMUSG00000110063 ENSMUST00000211266 Gm31045 lincRNA Interval_118064 chr4 128715418 128716994 + 0 NA intron (ENSMUSG00000028796.17, intron 2 of 2) protein_coding-intron (ENSMUSG00000028796.17, intron 7 of 14) 6042 ENSMUSG00000028796.17 ENSMUSG00000028796 ENSMUST00000134421 Phc2 protein_coding Interval_24289 chr11 32131816 32132809 + 0 NA Intergenic Intergenic -31084 ENSMUSG00000086386.1 ENSMUSG00000086386 ENSMUST00000145338 Gm12108 lincRNA Interval_159373 chr8 94151078 94151346 + 0 NA Intergenic Intergenic -1534 ENSMUSG00000031760.9 ENSMUSG00000031760 ENSMUST00000211915 Mt3 protein_coding Interval_108540 chr3 128304341 128304566 + 0 NA Intergenic Intergenic -23362 ENSMUSG00000106119.1 ENSMUSG00000106119 ENSMUST00000197882 Gm43656 processed_pseudogene Interval_139632 chr6 103900844 103901167 + 0 NA Intergenic Intergenic 63634 ENSMUSG00000108172.1 ENSMUSG00000108172 ENSMUST00000203981 Gm21054 processed_pseudogene Interval_28498 chr11 76357311 76358405 + 0 NA TTS (ENSMUSG00000020844.6) protein_coding-TTS (ENSMUSG00000020844.6) 41210 ENSMUSG00000020844.6 ENSMUSG00000020844 ENSMUST00000131472 Nxn protein_coding Interval_11308 chr1 180868330 180868836 + 0 NA TTS (ENSMUSG00000038806.7) protein_coding-TTS (ENSMUSG00000038806.7) -6295 ENSMUSG00000104251.1 ENSMUSG00000104251 ENSMUST00000195256 Gm18036 processed_pseudogene Interval_157698 chr8 72360235 72360917 + 0 NA intron (ENSMUSG00000006276.10, intron 21 of 21) protein_coding-intron (ENSMUSG00000006276.10, intron 21 of 23) 41543 ENSMUSG00000055148.7 ENSMUSG00000055148 ENSMUST00000067912 Klf2 protein_coding Interval_31116 chr11 98229218 98229431 + 0 NA intron (ENSMUSG00000003119.14, intron 6 of 13) protein_coding-intron (ENSMUSG00000003119.14, intron 6 of 12) -9294 ENSMUSG00000098827.1 ENSMUSG00000098827 ENSMUST00000184250 Gm27399 miRNA Interval_19183 chr10 95351291 95351641 + 0 NA intron (ENSMUSG00000100550.2, intron 1 of 2) lincRNA-intron (ENSMUSG00000100550.2, intron 1 of 2) -3422 ENSMUSG00000100550.2 ENSMUSG00000100550 ENSMUST00000219492 2310039L15Rik lincRNA Interval_156285 chr8 46961996 46963899 + 0 NA Intergenic Intergenic -14148 ENSMUSG00000109759.1 ENSMUSG00000109759 ENSMUST00000210613 1700011L03Rik lincRNA Interval_135353 chr6 38570146 38570557 + 0 NA TTS (ENSMUSG00000029823.16) protein_coding-TTS (ENSMUSG00000029823.16) 19017 ENSMUSG00000029823.16 ENSMUSG00000029823 ENSMUST00000160430 Luc7l2 protein_coding Interval_157089 chr8 65076323 65076612 + 0 NA intron (ENSMUSG00000074302.1, intron 1 of 1) protein_coding-intron (ENSMUSG00000074302.1, intron 1 of 1) 1434 ENSMUSG00000074302.1 ENSMUSG00000074302 ENSMUST00000098716 Gm10663 protein_coding Interval_120359 chr4 148089013 148089676 + 0 NA Intergenic Intergenic -4568 ENSMUSG00000029007.8 ENSMUSG00000029007 ENSMUST00000137393 Agtrap protein_coding Interval_121598 chr5 3771626 3772441 + 0 NA intron (ENSMUSG00000040351.11, intron 2 of 18) protein_coding-intron (ENSMUSG00000040351.11, intron 2 of 19) -16456 ENSMUSG00000105950.1 ENSMUSG00000105950 ENSMUST00000197051 Gm43679 TEC Interval_86453 chr19 40646316 40646782 + 0 NA intron (ENSMUSG00000117952.1, intron 1 of 1) protein_coding-intron (ENSMUSG00000048120.16, intron 1 of 9) 2403 ENSMUSG00000117952.1 ENSMUSG00000117952 ENSMUST00000235613 Gm50132 sense_intronic Interval_110880 chr4 9471907 9472420 + 0 NA intron (ENSMUSG00000028207.18, intron 22 of 22) protein_coding-intron (ENSMUSG00000028207.18, intron 23 of 23) -24964 ENSMUSG00000087564.1 ENSMUSG00000087564 ENSMUST00000155578 Gm11817 antisense Interval_92712 chr2 63621271 63621550 + 0 NA Intergenic Intergenic -189216 ENSMUSG00000065837.1 ENSMUSG00000065837 ENSMUST00000083903 Gm23503 snRNA Interval_23328 chr11 21433493 21434578 + 0 NA Intergenic Intergenic 17319 ENSMUSG00000084412.1 ENSMUSG00000084412 ENSMUST00000120335 Gm12044 processed_pseudogene Interval_115348 chr4 97745542 97746462 + 0 NA intron (ENSMUSG00000048747.14, intron 1 of 5) protein_coding-intron (ENSMUSG00000048747.14, intron 1 of 5) 11387 ENSMUSG00000085710.1 ENSMUSG00000085710 ENSMUST00000149078 Gm12676 processed_transcript Interval_129586 chr5 121156547 121157541 + 0 NA intron (ENSMUSG00000043733.14, intron 6 of 14) protein_coding-intron (ENSMUSG00000043733.14, intron 6 of 15) -13409 ENSMUSG00000043733.14 ENSMUSG00000043733 ENSMUST00000148871 Ptpn11 protein_coding Interval_174796 chrX 166660787 166662066 + 0 NA promoter-TSS (ENSMUSG00000086860.1) lincRNA-promoter-TSS (ENSMUSG00000086860.1) -599 ENSMUSG00000086860.1 ENSMUSG00000086860 ENSMUST00000135086 Gm1720 lincRNA Interval_111216 chr4 14919963 14920270 + 0 NA Intergenic Intergenic -10560 ENSMUSG00000086587.7 ENSMUSG00000086587 ENSMUST00000152024 Gm11837 antisense Interval_99263 chr2 158533907 158535398 + 0 NA intron (ENSMUSG00000074625.10, intron 5 of 14) protein_coding-intron (ENSMUSG00000074625.10, intron 5 of 14) 21856 ENSMUSG00000074625.10 ENSMUSG00000074625 ENSMUST00000135838 Arhgap40 protein_coding Interval_27823 chr11 70226156 70226731 + 0 NA intron (ENSMUSG00000000317.11, intron 8 of 8) protein_coding-intron (ENSMUSG00000000317.11, intron 8 of 8) 3234 ENSMUSG00000000317.11 ENSMUSG00000000317 ENSMUST00000140542 Bcl6b protein_coding Interval_71386 chr17 22952635 22952857 + 0 NA exon (ENSMUSG00000092111.2, exon 4 of 5) protein_coding-exon (ENSMUSG00000092111.2, exon 4 of 5) 9762 ENSMUSG00000092111.2 ENSMUSG00000092111 ENSMUST00000234787 Vmn2r113 protein_coding Interval_96013 chr2 119183171 119184347 + 0 NA promoter-TSS (ENSMUSG00000034278.3) protein_coding-promoter-TSS (ENSMUSG00000034278.3) 68 ENSMUSG00000034278.3 ENSMUSG00000034278 ENSMUST00000125731 Dnajc17 protein_coding Interval_157067 chr8 64928129 64929903 + 0 NA Intergenic Intergenic -2956 ENSMUSG00000089305.1 ENSMUSG00000089305 ENSMUST00000158680 Gm26210 misc_RNA Interval_117981 chr4 127452294 127452906 + 0 NA Intergenic Intergenic -22302 ENSMUSG00000087470.2 ENSMUSG00000087470 ENSMUST00000146587 A630031M04Rik lincRNA Interval_49275 chr13 110044439 110045024 + 0 NA Intergenic Intergenic 140922 ENSMUSG00000084651.1 ENSMUSG00000084651 ENSMUST00000122702 Mir1904 miRNA Interval_94355 chr2 90458682 90459052 + 0 NA intron (ENSMUSG00000025314.16, intron 9 of 23) protein_coding-intron (ENSMUSG00000025314.16, intron 7 of 21) -20383 ENSMUSG00000085471.1 ENSMUSG00000085471 ENSMUST00000126953 4933423P22Rik antisense Interval_52759 chr14 49434300 49434498 + 0 NA intron (ENSMUSG00000021852.14, intron 1 of 2) protein_coding-intron (ENSMUSG00000021852.14, intron 1 of 7) 85770 ENSMUSG00000089416.1 ENSMUSG00000089416 ENSMUST00000158791 Gm22116 snRNA Interval_26823 chr11 60863418 60865299 + 0 NA TTS (ENSMUSG00000043284.12) protein_coding-TTS (ENSMUSG00000043284.12) 14680 ENSMUSG00000043284.12 ENSMUSG00000043284 ENSMUST00000155031 Tmem11 protein_coding Interval_78756 chr18 20447045 20447227 + 0 NA intron (ENSMUSG00000001804.9, intron 3 of 15) protein_coding-intron (ENSMUSG00000001804.9, intron 3 of 15) 10961 ENSMUSG00000001804.9 ENSMUSG00000001804 ENSMUST00000019426 Dsg4 protein_coding Interval_23227 chr11 20673141 20673533 + 0 NA Intergenic Intergenic -56083 ENSMUSG00000084252.1 ENSMUSG00000084252 ENSMUST00000120008 Gm12036 processed_pseudogene Interval_58062 chr15 27558227 27559150 + 0 NA intron (ENSMUSG00000022265.7, intron 4 of 11) protein_coding-intron (ENSMUSG00000022265.7, intron 4 of 11) -12759 ENSMUSG00000022265.7 ENSMUSG00000022265 ENSMUST00000134004 Ank protein_coding Interval_132285 chr5 143937572 143937783 + 0 NA TTS (ENSMUSG00000104633.1) protein_coding-TTS (ENSMUSG00000104633.1) 9502 ENSMUSG00000104633.1 ENSMUSG00000104633 ENSMUST00000172367 Gm42421 protein_coding Interval_31442 chr11 100692136 100692770 + 0 NA promoter-TSS (ENSMUSG00000014198.15) protein_coding-promoter-TSS (ENSMUSG00000014198.15) 2 ENSMUSG00000014198.15 ENSMUSG00000014198 ENSMUST00000153494 Zfp385c protein_coding Interval_120418 chr4 148467819 148469313 + 0 NA intron (ENSMUSG00000028991.15, intron 14 of 57) protein_coding-intron (ENSMUSG00000028991.15, intron 14 of 57) -23805 ENSMUSG00000047719.2 ENSMUSG00000047719 ENSMUST00000156686 Ubiad1 protein_coding Interval_87421 chr19 49895930 49897013 + 0 NA Intergenic Intergenic 28116 ENSMUSG00000117697.1 ENSMUSG00000117697 ENSMUST00000236762 Siah1-ps1 processed_pseudogene Interval_115084 chr4 89438022 89438256 + 0 NA intron (ENSMUSG00000086035.1, intron 1 of 3) processed_transcript-intron (ENSMUSG00000086035.1, intron 1 of 3) 6505 ENSMUSG00000080808.1 ENSMUSG00000080808 ENSMUST00000122013 Gm12608 processed_pseudogene Interval_20967 chr10 122862807 122863078 + 0 NA intron (ENSMUSG00000034613.12, intron 5 of 5) protein_coding-intron (ENSMUSG00000034613.12, intron 5 of 9) -32426 ENSMUSG00000034613.12 ENSMUSG00000034613 ENSMUST00000162969 Ppm1h protein_coding Interval_9386 chr1 156712180 156712452 + 0 NA intron (ENSMUSG00000033557.17, intron 1 of 7) protein_coding-intron (ENSMUSG00000033557.17, intron 1 of 7) -13431 ENSMUSG00000033557.17 ENSMUSG00000033557 ENSMUST00000147931 Fam20b protein_coding Interval_89908 chr2 26388620 26389820 + 0 NA promoter-TSS (ENSMUSG00000026927.17) protein_coding-promoter-TSS (ENSMUSG00000026927.17) 75 ENSMUSG00000026927.17 ENSMUSG00000026927 ENSMUST00000140074 Entr1 protein_coding Interval_78879 chr18 21106124 21106311 + 0 NA Intergenic Intergenic -29108 ENSMUSG00000062962.5 ENSMUSG00000062962 ENSMUST00000084199 Gm6378 processed_pseudogene Interval_24953 chr11 41889509 41890215 + 0 NA intron (ENSMUSG00000087306.7, intron 4 of 8) processed_transcript-intron (ENSMUSG00000087306.7, intron 2 of 5) 26761 ENSMUSG00000020436.17 ENSMUSG00000020436 ENSMUST00000109290 Gabrg2 protein_coding Interval_111459 chr4 21792885 21793227 + 0 NA intron (ENSMUSG00000040455.17, intron 1 of 6) protein_coding-intron (ENSMUSG00000040455.17, intron 5 of 16) -25844 ENSMUSG00000028251.5 ENSMUSG00000028251 ENSMUST00000029915 Tstd3 protein_coding Interval_51555 chr14 30114020 30114936 + 0 NA intron (ENSMUSG00000015968.18, intron 18 of 40) protein_coding-intron (ENSMUSG00000015968.18, intron 19 of 48) 19716 ENSMUSG00000118437.1 ENSMUSG00000118437 ENSMUST00000238444 Gm50467 antisense Interval_120982 chr4 152051419 152051731 + 0 NA intron (ENSMUSG00000028948.16, intron 5 of 5) protein_coding-intron (ENSMUSG00000028948.16, intron 7 of 11) 12254 ENSMUSG00000028948.16 ENSMUSG00000028948 ENSMUST00000131696 Nol9 protein_coding Interval_112769 chr4 44783382 44784481 + 0 NA intron (ENSMUSG00000035649.17, intron 3 of 6) protein_coding-intron (ENSMUSG00000035649.17, intron 2 of 5) 28054 ENSMUSG00000035649.17 ENSMUSG00000035649 ENSMUST00000126968 Zcchc7 protein_coding Interval_117082 chr4 119415083 119415877 + 0 NA promoter-TSS (ENSMUSG00000028637.16) protein_coding-promoter-TSS (ENSMUSG00000028637.16) 6878 ENSMUSG00000028636.14 ENSMUSG00000028636 ENSMUST00000030385 Ppcs protein_coding Interval_168550 chr9 83482187 83483124 + 0 NA Intergenic Intergenic 2623 ENSMUSG00000099816.1 ENSMUSG00000099816 ENSMUST00000190725 Gm28552 processed_pseudogene Interval_135644 chr6 42282891 42283584 + 0 NA TTS (ENSMUSG00000029863.13) protein_coding-TTS (ENSMUSG00000029863.13) 3430 ENSMUSG00000029863.13 ENSMUSG00000029863 ENSMUST00000203089 Casp2 protein_coding Interval_48911 chr13 104694177 104694939 + 0 NA exon (ENSMUSG00000084860.1, exon 2 of 2) antisense-exon (ENSMUSG00000084860.1, exon 2 of 2) 9627 ENSMUSG00000084860.1 ENSMUSG00000084860 ENSMUST00000131215 2610204G07Rik antisense Interval_127644 chr5 106064590 106064802 + 0 NA Intergenic Intergenic 7737 ENSMUSG00000095052.1 ENSMUSG00000095052 ENSMUST00000180111 Gm25672 snRNA Interval_26906 chr11 61486329 61487081 + 0 NA intron (ENSMUSG00000042436.12, intron 3 of 3) protein_coding-intron (ENSMUSG00000042436.12, intron 3 of 4) 1214 ENSMUSG00000042436.12 ENSMUSG00000042436 ENSMUST00000126308 Mfap4 protein_coding Interval_166620 chr9 61339228 61339886 + 0 NA Intergenic Intergenic 32070 ENSMUSG00000074256.3 ENSMUSG00000074256 ENSMUST00000187131 Gm10655 lincRNA Interval_28985 chr11 79729600 79732599 + 0 NA Intergenic Intergenic 4699 ENSMUSG00000065489.1 ENSMUSG00000065489 ENSMUST00000083555 Mir365-2 miRNA Interval_133236 chr5 150759206 150759474 + 0 NA promoter-TSS (ENSMUSG00000034021.15) protein_coding-promoter-TSS (ENSMUSG00000034021.15) 7247 ENSMUSG00000107048.1 ENSMUSG00000107048 ENSMUST00000200678 Gm43807 sense_intronic Interval_92022 chr2 52634974 52636017 + 0 NA intron (ENSMUSG00000017412.15, intron 2 of 13) protein_coding-intron (ENSMUSG00000017412.15, intron 2 of 13) 15741 ENSMUSG00000025201.7 ENSMUSG00000025201 ENSMUST00000183232 Bloc1s2-ps processed_pseudogene Interval_91761 chr2 49356882 49357247 + 0 NA Intergenic Intergenic -28913 ENSMUSG00000084177.1 ENSMUSG00000084177 ENSMUST00000121639 Gm13508 processed_pseudogene Interval_165240 chr9 45686137 45686460 + 0 NA TTS (ENSMUSG00000032087.11) protein_coding-TTS (ENSMUSG00000032087.11) -51486 ENSMUSG00000096202.1 ENSMUSG00000096202 ENSMUST00000179911 Gm22069 snRNA Interval_65151 chr16 20198797 20200249 + 0 NA intron (ENSMUSG00000041215.16, intron 1 of 2) protein_coding-intron (ENSMUSG00000041215.16, intron 14 of 29) -22511 ENSMUSG00000084838.3 ENSMUSG00000084838 ENSMUST00000117664 Gm10241 processed_pseudogene Interval_60144 chr15 66350981 66351411 + 0 NA Intergenic Intergenic 7288 ENSMUSG00000115351.1 ENSMUSG00000115351 ENSMUST00000227329 Gm19077 processed_pseudogene Interval_79803 chr18 35188590 35188852 + 0 NA intron (ENSMUSG00000037815.7, intron 5 of 15) protein_coding-intron (ENSMUSG00000037815.7, intron 7 of 17) 26303 ENSMUSG00000071862.3 ENSMUSG00000071862 ENSMUST00000236680 Lrrtm2 protein_coding Interval_53727 chr14 61242763 61242982 + 0 NA intron (ENSMUSG00000035296.14, intron 3 of 8) protein_coding-intron (ENSMUSG00000035296.14, intron 2 of 7) -10432 ENSMUSG00000035296.14 ENSMUSG00000035296 ENSMUST00000129886 Sgcg protein_coding Interval_16203 chr10 61409660 61410465 + 0 NA Intergenic Intergenic -7910 ENSMUSG00000037171.6 ENSMUSG00000037171 ENSMUST00000049339 Nodal protein_coding Interval_10859 chr1 176181312 176181943 + 0 NA TTS (ENSMUSG00000103277.1) TEC-TTS (ENSMUSG00000103277.1) 2426 ENSMUSG00000103277.1 ENSMUSG00000103277 ENSMUST00000192153 Gm37916 TEC Interval_125204 chr5 65338350 65339102 + 0 NA Intergenic Intergenic -9682 ENSMUSG00000029195.10 ENSMUSG00000029195 ENSMUST00000205084 Klb protein_coding Interval_49262 chr13 109918634 109918994 + 0 NA intron (ENSMUSG00000021699.17, intron 7 of 15) protein_coding-intron (ENSMUSG00000021699.17, intron 6 of 14) 15005 ENSMUSG00000084651.1 ENSMUSG00000084651 ENSMUST00000122702 Mir1904 miRNA Interval_94947 chr2 102110375 102110982 + 0 NA TTS (ENSMUSG00000048058.17) protein_coding-TTS (ENSMUSG00000048058.17) 27441 ENSMUSG00000048058.17 ENSMUSG00000048058 ENSMUST00000127888 Ldlrad3 protein_coding Interval_155102 chr8 26509604 26510424 + 0 NA Intergenic Intergenic -41174 ENSMUSG00000109961.1 ENSMUSG00000109961 ENSMUST00000209999 Gm31983 lincRNA Interval_52482 chr14 46871367 46871620 + 0 NA intron (ENSMUSG00000115100.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000115100.1, intron 1 of 2) 11264 ENSMUSG00000115100.1 ENSMUSG00000115100 ENSMUST00000228024 Gm34934 lincRNA Interval_125171 chr5 65059423 65060568 + 0 NA intron (ENSMUSG00000037913.12, intron 5 of 7) protein_coding-intron (ENSMUSG00000037913.12, intron 5 of 7) 32137 ENSMUSG00000037913.12 ENSMUSG00000037913 ENSMUST00000203117 Tmem156 protein_coding Interval_154419 chr8 16067326 16068178 + 0 NA intron (ENSMUSG00000060924.15, intron 36 of 69) protein_coding-intron (ENSMUSG00000060924.15, intron 36 of 69) 101086 ENSMUSG00000093142.1 ENSMUSG00000093142 ENSMUST00000175401 Mir3106 miRNA Interval_29311 chr11 82855306 82856032 + 0 NA intron (ENSMUSG00000020696.18, intron 1 of 7) protein_coding-intron (ENSMUSG00000020696.18, intron 1 of 7) -9577 ENSMUSG00000020696.18 ENSMUSG00000020696 ENSMUST00000126660 Rffl protein_coding Interval_48809 chr13 103574138 103574341 + 0 NA Intergenic Intergenic -67687 ENSMUSG00000096642.1 ENSMUSG00000096642 ENSMUST00000179897 Gm24870 snRNA Interval_138970 chr6 93907366 93907605 + 0 NA intron (ENSMUSG00000045095.16, intron 2 of 24) protein_coding-intron (ENSMUSG00000045095.16, intron 2 of 21) 5019 ENSMUSG00000045095.16 ENSMUSG00000045095 ENSMUST00000203034 Magi1 protein_coding Interval_153262 chr7 143005926 143009094 + 0 NA TTS (ENSMUSG00000000244.17) protein_coding-TTS (ENSMUSG00000000244.17) 1820 ENSMUSG00000000244.17 ENSMUSG00000000244 ENSMUST00000154264 Tspan32 protein_coding Interval_113568 chr4 56759057 56759470 + 0 NA promoter-TSS (ENSMUSG00000028431.11) protein_coding-promoter-TSS (ENSMUSG00000028431.11) -1978 ENSMUSG00000028431.11 ENSMUSG00000028431 ENSMUST00000126441 Elp1 protein_coding Interval_8924 chr1 152274797 152275251 + 0 NA Intergenic Intergenic 17504 ENSMUSG00000103744.1 ENSMUSG00000103744 ENSMUST00000194334 Gm38238 TEC Interval_79462 chr18 32096242 32096476 + 0 NA intron (ENSMUSG00000024384.4, intron 14 of 14) protein_coding-intron (ENSMUSG00000024384.4, intron 13 of 13) 13093 ENSMUSG00000024384.4 ENSMUSG00000024384 ENSMUST00000212458 Iws1 protein_coding Interval_153675 chr8 4469970 4471005 + 0 NA Intergenic Intergenic 4898 ENSMUSG00000108860.1 ENSMUSG00000108860 ENSMUST00000207275 Gm6070 processed_pseudogene Interval_27146 chr11 63341651 63342258 + 0 NA Intergenic Intergenic -28643 ENSMUSG00000081600.3 ENSMUSG00000081600 ENSMUST00000119246 Gm12286 processed_pseudogene Interval_166109 chr9 56764773 56764974 + 0 NA intron (ENSMUSG00000049556.5, intron 2 of 3) protein_coding-intron (ENSMUSG00000049556.5, intron 2 of 3) 4250 ENSMUSG00000049556.5 ENSMUSG00000049556 ENSMUST00000210995 Lingo1 protein_coding Interval_107122 chr3 103723071 103723276 + 0 NA intron (ENSMUSG00000027848.12, intron 2 of 2) protein_coding-intron (ENSMUSG00000027848.12, intron 2 of 2) 9380 ENSMUSG00000027848.12 ENSMUSG00000027848 ENSMUST00000154145 Olfml3 protein_coding Interval_77624 chr17 93274947 93275207 + 0 NA Intergenic Intergenic -28263 ENSMUSG00000094473.1 ENSMUSG00000094473 ENSMUST00000178746 Gm25935 snRNA Interval_84819 chr19 17055517 17056685 + 0 NA TTS (ENSMUSG00000098298.1) misc_RNA-TTS (ENSMUSG00000098298.1) 1086 ENSMUSG00000098298.1 ENSMUSG00000098298 ENSMUST00000184854 Gm27970 misc_RNA Interval_105035 chr3 79942452 79942722 + 0 NA exon (ENSMUSG00000027955.16, exon 4 of 4) protein_coding-exon (ENSMUSG00000027955.16, exon 4 of 4) -55781 ENSMUSG00000102191.1 ENSMUSG00000102191 ENSMUST00000195082 Gm36569 antisense Interval_12167 chr1 190409324 190409963 + 0 NA intron (ENSMUSG00000103644.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000103644.1, intron 1 of 2) 5998 ENSMUSG00000103644.1 ENSMUSG00000103644 ENSMUST00000193966 Gm29678 lincRNA Interval_32699 chr11 109751262 109752075 + 0 NA Intergenic Intergenic -16818 ENSMUSG00000085734.1 ENSMUSG00000085734 ENSMUST00000144975 Gm11684 antisense Interval_149140 chr7 94587381 94588239 + 0 NA intron (ENSMUSG00000108532.1, intron 2 of 2) lincRNA-intron (ENSMUSG00000108532.1, intron 2 of 2) 14598 ENSMUSG00000108433.1 ENSMUSG00000108433 ENSMUST00000205372 Gm19761 processed_pseudogene Interval_105021 chr3 79842293 79844196 + 0 NA promoter-TSS (ENSMUSG00000027956.11) protein_coding-promoter-TSS (ENSMUSG00000027956.11) -332 ENSMUSG00000027956.11 ENSMUSG00000027956 ENSMUST00000194338 Tmem144 protein_coding Interval_60551 chr15 74890829 74891509 + 0 NA intron (ENSMUSG00000063522.5, intron 1 of 2) protein_coding-intron (ENSMUSG00000063522.5, intron 1 of 2) 5852 ENSMUSG00000063522.5 ENSMUSG00000063522 ENSMUST00000077004 Ly6m protein_coding Interval_6162 chr1 98384940 98385888 + 0 NA Intergenic Intergenic -72354 ENSMUSG00000089791.1 ENSMUSG00000089791 ENSMUST00000160287 Gm3555 processed_pseudogene Interval_2399 chr1 38997834 38998224 + 0 NA TTS (ENSMUSG00000026078.10) protein_coding-TTS (ENSMUSG00000026078.10) 5351 ENSMUSG00000103046.1 ENSMUSG00000103046 ENSMUST00000194994 Gm37309 TEC Interval_41903 chr13 4155287 4156743 + 0 NA Intergenic Intergenic -5387 ENSMUSG00000021214.14 ENSMUSG00000021214 ENSMUST00000021635 Akr1c18 protein_coding Interval_12706 chr10 4404048 4405617 + 0 NA intron (ENSMUSG00000019763.11, intron 1 of 2) protein_coding-intron (ENSMUSG00000019763.11, intron 11 of 12) -4201 ENSMUSG00000085687.1 ENSMUSG00000085687 ENSMUST00000132184 Gm16153 processed_transcript Interval_33382 chr11 116232493 116233004 + 0 NA intron (ENSMUSG00000034282.3, intron 7 of 21) protein_coding-intron (ENSMUSG00000034282.3, intron 7 of 21) 5329 ENSMUSG00000034282.3 ENSMUSG00000034282 ENSMUST00000037007 Evpl protein_coding Interval_144254 chr7 24023549 24024209 + 0 NA Intergenic Intergenic 22188 ENSMUSG00000092456.2 ENSMUSG00000092456 ENSMUST00000173571 V1rd19 protein_coding Interval_51018 chr14 21619484 21619737 + 0 NA exon (ENSMUSG00000021767.19, exon 5 of 5) protein_coding-exon (ENSMUSG00000021767.19, exon 5 of 5) 83492 ENSMUSG00000063821.6 ENSMUSG00000063821 ENSMUST00000224735 Dupd1 protein_coding Interval_146993 chr7 57386555 57387488 + 0 NA promoter-TSS (ENSMUSG00000055026.13) protein_coding-promoter-TSS (ENSMUSG00000055026.13) 167 ENSMUSG00000055026.13 ENSMUSG00000055026 ENSMUST00000171965 Gabrg3 protein_coding Interval_38022 chr12 74042468 74042669 + 0 NA intron (ENSMUSG00000044912.11, intron 1 of 3) protein_coding-intron (ENSMUSG00000044912.11, intron 1 of 7) 78087 ENSMUSG00000021113.5 ENSMUSG00000021113 ENSMUST00000220909 Snapc1 protein_coding Interval_151254 chr7 120300179 120301333 + 0 NA intron (ENSMUSG00000062017.15, intron 24 of 30) protein_coding-intron (ENSMUSG00000062017.15, intron 24 of 30) 22206 ENSMUSG00000062017.15 ENSMUSG00000062017 ENSMUST00000207961 Abca14 protein_coding Interval_7024 chr1 122554377 122554583 + 0 NA Intergenic Intergenic 1307 ENSMUSG00000089190.1 ENSMUSG00000089190 ENSMUST00000158565 Gm25771 snoRNA Interval_156325 chr8 47390654 47391428 + 0 NA intron (ENSMUSG00000038143.16, intron 7 of 7) protein_coding-intron (ENSMUSG00000038143.16, intron 7 of 7) 22796 ENSMUSG00000038143.16 ENSMUSG00000038143 ENSMUST00000181417 Stox2 protein_coding Interval_6543 chr1 115446675 115447502 + 0 NA Intergenic Intergenic -227325 ENSMUSG00000101687.1 ENSMUSG00000101687 ENSMUST00000185902 Gm4854 processed_pseudogene Interval_113239 chr4 51628989 51629765 + 0 NA Intergenic Intergenic -26390 ENSMUSG00000088515.1 ENSMUSG00000088515 ENSMUST00000157890 Gm23043 snoRNA Interval_75937 chr17 73244739 73245295 + 0 NA Intergenic Intergenic -7528 ENSMUSG00000117292.1 ENSMUSG00000117292 ENSMUST00000233479 E330032C10Rik lincRNA Interval_159029 chr8 88949517 88951965 + 0 NA Intergenic Intergenic -73994 ENSMUSG00000099078.1 ENSMUSG00000099078 ENSMUST00000183771 Mir8110 miRNA Interval_167409 chr9 68787087 68787505 + 0 NA intron (ENSMUSG00000032238.17, intron 1 of 5) protein_coding-intron (ENSMUSG00000032238.17, intron 1 of 10) 133405 ENSMUSG00000032238.17 ENSMUSG00000032238 ENSMUST00000113624 Rora protein_coding Interval_133675 chr6 8413836 8414825 + 0 NA intron (ENSMUSG00000089862.8, intron 4 of 4) protein_coding-intron (ENSMUSG00000089862.8, intron 2 of 2) -25023 ENSMUSG00000088118.1 ENSMUSG00000088118 ENSMUST00000157493 Gm24059 misc_RNA Interval_32107 chr11 105275837 105276087 + 0 NA exon (ENSMUSG00000020694.17, exon 20 of 20) protein_coding-exon (ENSMUSG00000020694.17, exon 20 of 20) -64870 ENSMUSG00000020695.14 ENSMUSG00000020695 ENSMUST00000151135 Mrc2 protein_coding Interval_20046 chr10 112586351 112587028 + 0 NA Intergenic Intergenic -104890 ENSMUSG00000112678.1 ENSMUSG00000112678 ENSMUST00000219009 Gm47492 processed_pseudogene Interval_49740 chr13 114378953 114379519 + 0 NA intron (ENSMUSG00000021764.8, intron 1 of 1) protein_coding-intron (ENSMUSG00000021764.8, intron 1 of 4) 8814 ENSMUSG00000021764.8 ENSMUSG00000021764 ENSMUST00000225978 Ndufs4 protein_coding Interval_25067 chr11 43617104 43618014 + 0 NA Intergenic Intergenic -1230 ENSMUSG00000082614.1 ENSMUSG00000082614 ENSMUST00000117511 Gm12149 processed_pseudogene Interval_115052 chr4 88903595 88904287 + 0 NA Intergenic Intergenic 6721 ENSMUSG00000065408.1 ENSMUSG00000065408 ENSMUST00000083474 Mir31 miRNA Interval_45732 chr13 57370328 57372956 + 0 NA Intergenic Intergenic 94964 ENSMUSG00000114411.1 ENSMUSG00000114411 ENSMUST00000224461 Gm48176 processed_pseudogene Interval_22394 chr11 9514626 9516103 + 0 NA intron (ENSMUSG00000004668.14, intron 43 of 61) protein_coding-intron (ENSMUSG00000004668.14, intron 43 of 61) 190259 ENSMUSG00000104137.1 ENSMUSG00000104137 ENSMUST00000195362 Gm36954 TEC Interval_142145 chr6 137614394 137614729 + 0 NA intron (ENSMUSG00000015766.14, intron 1 of 4) protein_coding-intron (ENSMUSG00000015766.14, intron 1 of 21) -20986 ENSMUSG00000107878.1 ENSMUSG00000107878 ENSMUST00000203153 Gm44106 TEC Interval_28724 chr11 77934047 77934671 + 0 NA intron (ENSMUSG00000000632.13, intron 1 of 15) protein_coding-intron (ENSMUSG00000000632.13, intron 1 of 15) 3320 ENSMUSG00000000632.13 ENSMUSG00000000632 ENSMUST00000126866 Sez6 protein_coding Interval_139233 chr6 97402556 97403326 + 0 NA intron (ENSMUSG00000030064.16, intron 5 of 7) protein_coding-intron (ENSMUSG00000030064.16, intron 4 of 22) -46809 ENSMUSG00000108185.1 ENSMUSG00000108185 ENSMUST00000204326 Gm19653 processed_pseudogene Interval_21453 chr10 128695757 128696856 + 0 NA promoter-TSS (ENSMUSG00000000711.3) protein_coding-promoter-TSS (ENSMUSG00000000711.3) -49 ENSMUSG00000000711.3 ENSMUSG00000000711 ENSMUST00000220593 Rab5b protein_coding Interval_68380 chr16 75227693 75228030 + 0 NA Intergenic Intergenic 80628 ENSMUSG00000116698.1 ENSMUSG00000116698 ENSMUST00000232159 Gm49676 processed_pseudogene Interval_85581 chr19 28791000 28791564 + 0 NA Intergenic Intergenic 21920 ENSMUSG00000098069.1 ENSMUSG00000098069 ENSMUST00000182854 Gm26942 processed_pseudogene Interval_86132 chr19 36937099 36937301 + 0 NA intron (ENSMUSG00000040565.8, intron 1 of 37) protein_coding-intron (ENSMUSG00000040565.8, intron 1 of 37) -17601 ENSMUSG00000047632.11 ENSMUSG00000047632 ENSMUST00000057337 Fgfbp3 protein_coding Interval_47547 chr13 87630357 87630721 + 0 NA Intergenic Intergenic -152432 ENSMUSG00000098011.1 ENSMUSG00000098011 ENSMUST00000182187 Gm21232 processed_pseudogene Interval_146354 chr7 45477044 45477280 + 0 NA intron (ENSMUSG00000109926.1, intron 3 of 5) protein_coding-intron (ENSMUSG00000011382.8, intron 5 of 6) -4715 ENSMUSG00000023467.18 ENSMUSG00000023467 ENSMUST00000209763 Tulp2 protein_coding Interval_159928 chr8 105237884 105238763 + 0 NA intron (ENSMUSG00000031889.9, intron 3 of 13) protein_coding-intron (ENSMUSG00000031889.9, intron 3 of 15) 13117 ENSMUSG00000031889.9 ENSMUSG00000031889 ENSMUST00000133035 D230025D16Rik protein_coding Interval_49360 chr13 111458036 111459417 + 0 NA intron (ENSMUSG00000116016.1, intron 2 of 7) protein_coding-intron (ENSMUSG00000032745.18, intron 3 of 12) -5303 ENSMUSG00000032745.18 ENSMUSG00000032745 ENSMUST00000129638 Gpbp1 protein_coding Interval_14254 chr10 29832025 29832353 + 0 NA Intergenic Intergenic 50778 ENSMUSG00000111427.1 ENSMUSG00000111427 ENSMUST00000215034 Gm6390 processed_pseudogene Interval_28927 chr11 79319005 79319399 + 0 NA Intergenic Intergenic -20590 ENSMUSG00000020716.16 ENSMUSG00000020716 ENSMUST00000137997 Nf1 protein_coding Interval_13146 chr10 12483005 12483193 + 0 NA intron (ENSMUSG00000019820.11, intron 5 of 24) protein_coding-intron (ENSMUSG00000019820.11, intron 54 of 73) -61503 ENSMUSG00000112816.1 ENSMUSG00000112816 ENSMUST00000220361 Gm48798 TEC Interval_90641 chr2 31624737 31625585 + 0 NA Intergenic Intergenic 12740 ENSMUSG00000098904.1 ENSMUSG00000098904 ENSMUST00000183343 Mir6998 miRNA Interval_69774 chr16 96191586 96192616 + 0 NA intron (ENSMUSG00000045275.16, intron 1 of 4) protein_coding-intron (ENSMUSG00000045275.16, intron 1 of 10) 170 ENSMUSG00000045275.16 ENSMUSG00000045275 ENSMUST00000233889 Lca5l protein_coding Interval_119150 chr4 135855029 135857032 + 0 NA promoter-TSS (ENSMUSG00000028676.17) protein_coding-promoter-TSS (ENSMUSG00000028676.17) -82 ENSMUSG00000028676.17 ENSMUSG00000028676 ENSMUST00000142002 Srsf10 protein_coding Interval_7205 chr1 127795126 127795315 + 0 NA exon (ENSMUSG00000026349.14, exon 3 of 3) protein_coding-exon (ENSMUSG00000026349.14, exon 3 of 3) -1351 ENSMUSG00000026349.14 ENSMUSG00000026349 ENSMUST00000153359 Ccnt2 protein_coding Interval_51346 chr14 26595042 26595345 + 0 NA intron (ENSMUSG00000040818.10, intron 3 of 15) protein_coding-intron (ENSMUSG00000040818.10, intron 3 of 19) -9478 ENSMUSG00000040818.10 ENSMUSG00000040818 ENSMUST00000225206 Dennd6a protein_coding Interval_16771 chr10 68067858 68068707 + 0 NA Intergenic Intergenic -41656 ENSMUSG00000086838.1 ENSMUSG00000086838 ENSMUST00000143555 Gm16212 antisense Interval_154116 chr8 12851234 12851798 + 0 NA intron (ENSMUSG00000031441.15, intron 4 of 4) protein_coding-intron (ENSMUSG00000031441.15, intron 25 of 29) 3661 ENSMUSG00000031441.15 ENSMUSG00000031441 ENSMUST00000139545 Atp11a protein_coding Interval_30475 chr11 94601381 94602691 + 0 NA promoter-TSS (ENSMUSG00000076435.3) protein_coding-promoter-TSS (ENSMUSG00000076435.3) -267 ENSMUSG00000076435.3 ENSMUSG00000076435 ENSMUST00000155122 Acsf2 protein_coding Interval_15071 chr10 42327032 42327843 + 0 NA intron (ENSMUSG00000038302.14, intron 8 of 10) protein_coding-intron (ENSMUSG00000038302.14, intron 10 of 12) 3826 ENSMUSG00000081873.1 ENSMUSG00000081873 ENSMUST00000120526 Gm15197 processed_pseudogene Interval_74292 chr17 48602341 48603140 + 0 NA Intergenic Intergenic -15083 ENSMUSG00000077708.1 ENSMUSG00000077708 ENSMUST00000104520 Gm24071 snoRNA Interval_73056 chr17 34517944 34518148 + 0 NA promoter-TSS (ENSMUSG00000092618.2) protein_coding-promoter-TSS (ENSMUSG00000092618.2) -694 ENSMUSG00000092618.2 ENSMUSG00000092618 ENSMUST00000075483 Btnl6 protein_coding Interval_115836 chr4 105168914 105171577 + 0 NA intron (ENSMUSG00000028517.8, intron 1 of 5) protein_coding-intron (ENSMUSG00000028517.8, intron 1 of 5) 12898 ENSMUSG00000028517.8 ENSMUSG00000028517 ENSMUST00000064139 Plpp3 protein_coding Interval_8752 chr1 150454259 150455362 + 0 NA exon (ENSMUSG00000006014.16, exon 5 of 11) protein_coding-exon (ENSMUSG00000006014.16, exon 5 of 11) 10788 ENSMUSG00000006014.16 ENSMUSG00000006014 ENSMUST00000159035 Prg4 protein_coding Interval_42287 chr13 11803714 11803958 + 0 NA intron (ENSMUSG00000021313.16, intron 16 of 24) protein_coding-intron (ENSMUSG00000021313.16, intron 17 of 104) 17898 ENSMUSG00000113269.1 ENSMUSG00000113269 ENSMUST00000221204 Gm47494 TEC Interval_69114 chr16 90752391 90752684 + 0 NA intron (ENSMUSG00000039929.14, intron 38 of 38) protein_coding-intron (ENSMUSG00000039929.14, intron 38 of 38) 14213 ENSMUSG00000039956.9 ENSMUSG00000039956 ENSMUST00000038197 Mrap protein_coding Interval_90205 chr2 29016444 29017335 + 0 NA intron (ENSMUSG00000079502.8, intron 1 of 6) protein_coding-intron (ENSMUSG00000079502.8, intron 1 of 5) 22471 ENSMUSG00000079502.8 ENSMUSG00000079502 ENSMUST00000113843 Cfap77 protein_coding Interval_138084 chr6 85044080 85045962 + 0 NA intron (ENSMUSG00000033769.16, intron 1 of 2) protein_coding-intron (ENSMUSG00000033769.16, intron 1 of 16) -17553 ENSMUSG00000107629.1 ENSMUSG00000107629 ENSMUST00000203336 Gm44011 processed_pseudogene Interval_104273 chr3 62469864 62470476 + 0 NA TTS (ENSMUSG00000027770.5) protein_coding-TTS (ENSMUSG00000027770.5) 31963 ENSMUSG00000027770.5 ENSMUSG00000027770 ENSMUST00000192223 Dhx36 protein_coding Interval_95142 chr2 104227039 104227544 + 0 NA TTS (ENSMUSG00000089606.1) snoRNA-TTS (ENSMUSG00000089606.1) 947 ENSMUSG00000089606.1 ENSMUSG00000089606 ENSMUST00000158981 Gm22501 snoRNA Interval_34739 chr12 9112154 9112759 + 0 NA Intergenic Intergenic 82429 ENSMUSG00000066637.2 ENSMUSG00000066637 ENSMUST00000219470 Ttc32 protein_coding Interval_86842 chr19 44302568 44303110 + 0 NA promoter-TSS (ENSMUSG00000093315.1) miRNA-promoter-TSS (ENSMUSG00000093315.1) -332 ENSMUSG00000093315.1 ENSMUSG00000093315 ENSMUST00000175574 Mir5114 miRNA Interval_167425 chr9 69053586 69053947 + 0 NA intron (ENSMUSG00000032238.17, intron 1 of 5) protein_coding-intron (ENSMUSG00000032238.17, intron 1 of 10) 310481 ENSMUSG00000086648.1 ENSMUSG00000086648 ENSMUST00000152570 Gm15511 antisense Interval_59551 chr15 55231066 55231322 + 0 NA intron (ENSMUSG00000022419.16, intron 8 of 8) protein_coding-intron (ENSMUSG00000022419.16, intron 8 of 8) 31409 ENSMUSG00000095792.1 ENSMUSG00000095792 ENSMUST00000179457 Gm26296 snRNA Interval_68841 chr16 87508752 87509343 + 0 NA Intergenic Intergenic 13048 ENSMUSG00000093606.1 ENSMUSG00000093606 ENSMUST00000175717 B130034C11Rik processed_transcript Interval_45517 chr13 55601765 55602049 + 0 NA TTS (ENSMUSG00000086506.1) antisense-TTS (ENSMUSG00000086506.1) 1842 ENSMUSG00000021504.14 ENSMUSG00000021504 ENSMUST00000064701 B4galt7 protein_coding Interval_170717 chr9 110275819 110276239 + 0 NA Intergenic Intergenic -5258 ENSMUSG00000098973.1 ENSMUSG00000098973 ENSMUST00000184437 Mir6236 miRNA Interval_18516 chr10 86847867 86848199 + 0 NA exon (ENSMUSG00000035459.18, exon 65 of 69) protein_coding-exon (ENSMUSG00000035459.18, exon 65 of 69) 8939 ENSMUSG00000089959.1 ENSMUSG00000089959 ENSMUST00000159445 Gm16268 antisense Interval_72887 chr17 32947004 32947951 + 0 NA promoter-TSS (ENSMUSG00000024055.15) protein_coding-promoter-TSS (ENSMUSG00000024055.15) 5080 ENSMUSG00000024295.9 ENSMUSG00000024295 ENSMUST00000234365 Cyp4f41-ps transcribed_unprocessed_pseudogene Interval_63030 chr15 98727454 98728493 + 0 NA exon (ENSMUSG00000003355.7, exon 1 of 6) protein_coding-exon (ENSMUSG00000003355.7, exon 1 of 6) 179 ENSMUSG00000003355.7 ENSMUSG00000003355 ENSMUST00000229562 Fkbp11 protein_coding Interval_109511 chr3 143292671 143293259 + 0 NA Intergenic Intergenic -37455 ENSMUSG00000106162.1 ENSMUSG00000106162 ENSMUST00000199409 Gm43613 lincRNA Interval_111414 chr4 21368212 21369035 + 0 NA Intergenic Intergenic 40103 ENSMUSG00000089322.1 ENSMUSG00000089322 ENSMUST00000158697 Gm25977 snoRNA Interval_85846 chr19 32322314 32322919 + 0 NA intron (ENSMUSG00000040451.18, intron 2 of 2) protein_coding-intron (ENSMUSG00000040451.18, intron 2 of 9) -45652 ENSMUSG00000040451.18 ENSMUSG00000040451 ENSMUST00000141252 Sgms1 protein_coding Interval_116207 chr4 108686133 108687143 + 0 NA intron (ENSMUSG00000034557.14, intron 7 of 17) protein_coding-intron (ENSMUSG00000034557.14, intron 5 of 15) -33011 ENSMUSG00000094958.1 ENSMUSG00000094958 ENSMUST00000178992 3110021N24Rik protein_coding Interval_112554 chr4 43086706 43087361 + 0 NA intron (ENSMUSG00000028456.18, intron 1 of 1) protein_coding-intron (ENSMUSG00000028456.18, intron 1 of 38) 40991 ENSMUSG00000096974.2 ENSMUSG00000096974 ENSMUST00000211208 Gm26881 antisense Interval_124726 chr5 53569364 53571279 + 0 NA intron (ENSMUSG00000039191.12, intron 2 of 6) protein_coding-intron (ENSMUSG00000039191.12, intron 1 of 10) -22999 ENSMUSG00000107111.1 ENSMUSG00000107111 ENSMUST00000202154 Gm40304 antisense Interval_173507 chrX 96845240 96846554 + 0 NA Intergenic Intergenic 41976 ENSMUSG00000082735.1 ENSMUSG00000082735 ENSMUST00000117289 Gm16394 processed_pseudogene Interval_30791 chr11 96484355 96485284 + 0 NA intron (ENSMUSG00000057058.16, intron 1 of 2) protein_coding-intron (ENSMUSG00000057058.16, intron 1 of 11) 1037 ENSMUSG00000057058.16 ENSMUSG00000057058 ENSMUST00000123814 Skap1 protein_coding Interval_11288 chr1 180767357 180769035 + 0 NA intron (ENSMUSG00000103156.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000103156.1, intron 1 of 1) 460 ENSMUSG00000103156.1 ENSMUSG00000103156 ENSMUST00000193209 Gm38293 lincRNA Interval_130181 chr5 124785846 124786303 + 0 NA promoter-TSS (ENSMUSG00000038011.15) protein_coding-promoter-TSS (ENSMUSG00000038011.15) -479 ENSMUSG00000038011.15 ENSMUSG00000038011 ENSMUST00000196708 Dnah10 protein_coding Interval_6234 chr1 103471283 103472755 + 0 NA Intergenic Intergenic 108033 ENSMUSG00000099469.1 ENSMUSG00000099469 ENSMUST00000190357 Gm29141 unprocessed_pseudogene Interval_148214 chr7 79920316 79921089 + 0 NA promoter-TSS (ENSMUSG00000063801.7) protein_coding-promoter-TSS (ENSMUSG00000063801.7) -21 ENSMUSG00000097699.2 ENSMUSG00000097699 ENSMUST00000181717 5430400D12Rik bidirectional_promoter_lncRNA Interval_74771 chr17 56461640 56463005 + 0 NA promoter-TSS (ENSMUSG00000013236.17) protein_coding-promoter-TSS (ENSMUSG00000013236.17) -26337 ENSMUSG00000013236.17 ENSMUSG00000013236 ENSMUST00000224193 Ptprs protein_coding Interval_95990 chr2 119005758 119006407 + 0 NA Intergenic Intergenic -2127 ENSMUSG00000081413.3 ENSMUSG00000081413 ENSMUST00000121613 Uqcrh-ps2 processed_pseudogene Interval_141584 chr6 129665419 129665853 + 0 NA TTS (ENSMUSG00000030167.15) protein_coding-TTS (ENSMUSG00000030167.15) -5021 ENSMUSG00000052736.15 ENSMUSG00000052736 ENSMUST00000149494 Klrc2 protein_coding Interval_171911 chr9 122472790 122472985 + 0 NA Intergenic Intergenic -5863 ENSMUSG00000110725.1 ENSMUSG00000110725 ENSMUST00000214531 Gm47129 processed_pseudogene Interval_127996 chr5 110147599 110148025 + 0 NA intron (ENSMUSG00000014668.15, intron 8 of 14) protein_coding-intron (ENSMUSG00000014668.15, intron 7 of 17) 6310 ENSMUSG00000105541.1 ENSMUSG00000105541 ENSMUST00000200403 Gm43136 antisense Interval_29145 chr11 80638420 80638693 + 0 NA intron (ENSMUSG00000035441.14, intron 15 of 20) protein_coding-intron (ENSMUSG00000035441.14, intron 15 of 21) -129450 ENSMUSG00000085078.1 ENSMUSG00000085078 ENSMUST00000133400 C030013C21Rik sense_intronic Interval_76902 chr17 84849956 84850392 + 0 NA Intergenic Intergenic -2364 ENSMUSG00000117631.1 ENSMUSG00000117631 ENSMUST00000234899 Gm9400 unprocessed_pseudogene Interval_13658 chr10 20625664 20626489 + 0 NA exon (ENSMUSG00000091730.1, exon 1 of 1) processed_pseudogene-exon (ENSMUSG00000091730.1, exon 1 of 1) 441 ENSMUSG00000091730.1 ENSMUSG00000091730 ENSMUST00000171194 Gm17230 processed_pseudogene Interval_162618 chr9 6823572 6824526 + 0 NA Intergenic Intergenic 22206 ENSMUSG00000111464.1 ENSMUSG00000111464 ENSMUST00000213261 Gm48675 processed_pseudogene Interval_142749 chr6 145320255 145320690 + 0 NA Intergenic Intergenic -3864 ENSMUSG00000083962.1 ENSMUSG00000083962 ENSMUST00000118804 Gm15707 processed_pseudogene Interval_87079 chr19 46005226 46005807 + 0 NA exon (ENSMUSG00000074811.3, exon 1 of 1) protein_coding-exon (ENSMUSG00000074811.3, exon 1 of 1) 2008 ENSMUSG00000074811.3 ENSMUSG00000074811 ENSMUST00000099393 Hps6 protein_coding Interval_145321 chr7 33227045 33227632 + 0 NA Intergenic Intergenic 41770 ENSMUSG00000101401.1 ENSMUSG00000101401 ENSMUST00000191255 Scgb1b18 protein_coding Interval_82817 chr18 77184980 77186357 + 0 NA promoter-TSS (ENSMUSG00000025425.18) protein_coding-promoter-TSS (ENSMUSG00000025425.18) 695 ENSMUSG00000073532.3 ENSMUSG00000073532 ENSMUST00000097520 Gm7276 bidirectional_promoter_lncRNA Interval_22474 chr11 10805783 10806023 + 0 NA Intergenic Intergenic -310582 ENSMUSG00000050830.17 ENSMUSG00000050830 ENSMUST00000154155 Vwc2 protein_coding Interval_149906 chr7 102479254 102480009 + 0 NA intron (ENSMUSG00000044814.6, intron 1 of 1) protein_coding-intron (ENSMUSG00000044814.6, intron 1 of 1) 2048 ENSMUSG00000044814.6 ENSMUSG00000044814 ENSMUST00000061482 Olfr543 protein_coding Interval_61601 chr15 82901156 82901987 + 0 NA intron (ENSMUSG00000100199.1, intron 2 of 3) protein_coding-intron (ENSMUSG00000041852.15, intron 1 of 4) -1760 ENSMUSG00000041852.15 ENSMUSG00000041852 ENSMUST00000229439 Tcf20 protein_coding Interval_135231 chr6 37679021 37679217 + 0 NA Intergenic Intergenic 8076 ENSMUSG00000107035.1 ENSMUSG00000107035 ENSMUST00000201305 Ybx1-ps2 processed_pseudogene Interval_168128 chr9 77399443 77399680 + 0 NA promoter-TSS (ENSMUSG00000099170.1) lincRNA-promoter-TSS (ENSMUSG00000099170.1) -143 ENSMUSG00000099170.1 ENSMUSG00000099170 ENSMUST00000183878 5730403I07Rik lincRNA Interval_3239 chr1 55074606 55077761 + 0 NA Intergenic Intergenic 9919 ENSMUSG00000101122.1 ENSMUSG00000101122 ENSMUST00000190239 Gm17971 processed_pseudogene Interval_55864 chr14 101653394 101654730 + 0 NA promoter-TSS (ENSMUSG00000022111.9) protein_coding-promoter-TSS (ENSMUSG00000022111.9) 37 ENSMUSG00000022111.9 ENSMUSG00000022111 ENSMUST00000226340 Uchl3 protein_coding Interval_109442 chr3 142462811 142463175 + 0 NA Intergenic Intergenic -39803 ENSMUSG00000105504.4 ENSMUSG00000105504 ENSMUST00000199578 Gbp5 protein_coding Interval_91393 chr2 38520035 38520418 + 0 NA intron (ENSMUSG00000026749.11, intron 2 of 3) protein_coding-intron (ENSMUSG00000026749.11, intron 1 of 9) 5600 ENSMUSG00000026749.11 ENSMUSG00000026749 ENSMUST00000156726 Nek6 protein_coding Interval_90259 chr2 29376453 29376685 + 0 NA intron (ENSMUSG00000086994.1, intron 1 of 1) protein_coding-intron (ENSMUSG00000026799.15, intron 2 of 7) 19890 ENSMUSG00000086994.1 ENSMUSG00000086994 ENSMUST00000153600 Gm13402 antisense Interval_69529 chr16 94059694 94060347 + 0 NA Intergenic Intergenic 23846 ENSMUSG00000116569.1 ENSMUSG00000116569 ENSMUST00000231710 Gm49620 bidirectional_promoter_lncRNA Interval_92740 chr2 64947476 64949415 + 0 NA intron (ENSMUSG00000026888.14, intron 2 of 5) protein_coding-intron (ENSMUSG00000026888.14, intron 3 of 13) 27324 ENSMUSG00000026888.14 ENSMUSG00000026888 ENSMUST00000146807 Grb14 protein_coding Interval_68065 chr16 64821621 64821962 + 0 NA intron (ENSMUSG00000047141.5, intron 2 of 8) protein_coding-intron (ENSMUSG00000047141.5, intron 2 of 8) 29861 ENSMUSG00000047141.5 ENSMUSG00000047141 ENSMUST00000052588 Zfp654 protein_coding Interval_99223 chr2 158204084 158204826 + 0 NA intron (ENSMUSG00000037813.13, intron 10 of 14) protein_coding-intron (ENSMUSG00000037813.13, intron 10 of 13) 12447 ENSMUSG00000078957.3 ENSMUSG00000078957 ENSMUST00000109506 1700060C20Rik antisense Interval_64053 chr16 6519396 6519692 + 0 NA intron (ENSMUSG00000008658.16, intron 3 of 11) protein_coding-intron (ENSMUSG00000008658.16, intron 2 of 14) 543959 ENSMUSG00000101481.1 ENSMUSG00000101481 ENSMUST00000190515 1700123O21Rik sense_intronic Interval_104583 chr3 68525078 68526870 + 0 NA intron (ENSMUSG00000027777.15, intron 2 of 5) protein_coding-intron (ENSMUSG00000027777.15, intron 2 of 7) 21734 ENSMUSG00000084617.1 ENSMUSG00000084617 ENSMUST00000122668 Gm22073 snRNA Interval_115638 chr4 101531795 101532292 + 0 NA exon (ENSMUSG00000028528.17, exon 2 of 20) protein_coding-exon (ENSMUSG00000028528.17, exon 2 of 20) -23052 ENSMUSG00000089446.1 ENSMUSG00000089446 ENSMUST00000158821 Gm22533 misc_RNA Interval_163207 chr9 18282332 18282635 + 0 NA Intergenic Intergenic 7377 ENSMUSG00000111870.1 ENSMUSG00000111870 ENSMUST00000213534 Gm7692 processed_pseudogene Interval_69571 chr16 94352772 94352981 + 0 NA Intergenic Intergenic 6436 ENSMUSG00000089814.1 ENSMUSG00000089814 ENSMUST00000117891 Gm15310 transcribed_processed_pseudogene Interval_89514 chr2 21392637 21393655 + 0 NA intron (ENSMUSG00000045967.11, intron 1 of 7) protein_coding-intron (ENSMUSG00000045967.11, intron 1 of 10) -24035 ENSMUSG00000085680.1 ENSMUSG00000085680 ENSMUST00000133391 Gm13327 antisense Interval_86126 chr19 36897294 36898381 + 0 NA Intergenic Intergenic 21762 ENSMUSG00000047632.11 ENSMUSG00000047632 ENSMUST00000057337 Fgfbp3 protein_coding Interval_92871 chr2 67447982 67448267 + 0 NA intron (ENSMUSG00000027022.14, intron 1 of 7) protein_coding-intron (ENSMUSG00000027022.14, intron 1 of 8) 28093 ENSMUSG00000088043.1 ENSMUSG00000088043 ENSMUST00000157418 Gm23328 snoRNA Interval_35003 chr12 16580478 16581523 + 0 NA intron (ENSMUSG00000020593.16, intron 2 of 21) protein_coding-intron (ENSMUSG00000020593.16, intron 1 of 20) 29966 ENSMUSG00000020593.16 ENSMUSG00000020593 ENSMUST00000221146 Lpin1 protein_coding Interval_87869 chr19 56721264 56724353 + 0 NA exon (ENSMUSG00000035283.5, exon 1 of 1) protein_coding-exon (ENSMUSG00000035283.5, exon 1 of 1) -1055 ENSMUSG00000035283.5 ENSMUSG00000035283 ENSMUST00000236875 Adrb1 protein_coding Interval_40810 chr12 108546829 108547787 + 0 NA intron (ENSMUSG00000097788.2, intron 1 of 3) antisense-intron (ENSMUSG00000097788.2, intron 1 of 4) 8156 ENSMUSG00000097788.2 ENSMUSG00000097788 ENSMUST00000220796 Gm16596 antisense Interval_127720 chr5 107058357 107059178 + 0 NA Intergenic Intergenic 9931 ENSMUSG00000106554.1 ENSMUSG00000106554 ENSMUST00000199486 Gm33474 lincRNA Interval_136222 chr6 52149957 52150860 + 0 NA Intergenic Intergenic 7909 ENSMUSG00000029844.9 ENSMUSG00000029844 ENSMUST00000120363 Hoxa1 protein_coding Interval_126275 chr5 85936471 85937176 + 0 NA Intergenic Intergenic 68794 ENSMUSG00000106225.1 ENSMUSG00000106225 ENSMUST00000196185 Gm43564 processed_pseudogene Interval_162848 chr9 10338780 10340535 + 0 NA intron (ENSMUSG00000039488.15, intron 3 of 24) protein_coding-intron (ENSMUSG00000039488.15, intron 1 of 22) -44501 ENSMUSG00000096815.1 ENSMUSG00000096815 ENSMUST00000179931 Gm25086 miRNA Interval_155592 chr8 34945331 34945661 + 0 NA intron (ENSMUSG00000031529.5, intron 1 of 26) protein_coding-intron (ENSMUSG00000031529.5, intron 1 of 26) -20937 ENSMUSG00000054247.6 ENSMUSG00000054247 ENSMUST00000210951 Gm9939 bidirectional_promoter_lncRNA Interval_91508 chr2 39806253 39807702 + 0 NA Intergenic Intergenic 82982 ENSMUSG00000107699.1 ENSMUSG00000107699 ENSMUST00000204346 Gm43970 TEC Interval_9046 chr1 153273633 153274904 + 0 NA intron (ENSMUSG00000026478.14, intron 1 of 27) protein_coding-intron (ENSMUSG00000026478.14, intron 1 of 27) 12922 ENSMUSG00000103818.1 ENSMUSG00000103818 ENSMUST00000194884 Gm38009 TEC Interval_103342 chr3 39840453 39841187 + 0 NA Intergenic Intergenic 17243 ENSMUSG00000106948.1 ENSMUSG00000106948 ENSMUST00000202316 Gm42785 processed_pseudogene Interval_50162 chr14 8383002 8384113 + 0 NA Intergenic Intergenic -4835 ENSMUSG00000021749.6 ENSMUSG00000021749 ENSMUST00000224529 Oit1 protein_coding Interval_141034 chr6 124499871 124502088 + 0 NA intron (ENSMUSG00000038527.9, intron 2 of 5) protein_coding-intron (ENSMUSG00000038527.9, intron 2 of 5) -6611 ENSMUSG00000107552.1 ENSMUSG00000107552 ENSMUST00000203171 Gm44096 antisense Interval_54679 chr14 73234033 73235070 + 0 NA intron (ENSMUSG00000022105.6, intron 17 of 26) protein_coding-intron (ENSMUSG00000022105.6, intron 17 of 26) -3344 ENSMUSG00000033446.7 ENSMUSG00000033446 ENSMUST00000044405 Lpar6 protein_coding Interval_35810 chr12 30142033 30142375 + 0 NA Intergenic Intergenic -10305 ENSMUSG00000020673.14 ENSMUSG00000020673 ENSMUST00000155263 Tpo protein_coding Interval_36251 chr12 40306071 40306389 + 0 NA Intergenic Intergenic 22748 ENSMUSG00000055917.15 ENSMUSG00000055917 ENSMUST00000221847 Zfp277 protein_coding Interval_117994 chr4 127536983 127537205 + 0 NA intron (ENSMUSG00000087470.2, intron 3 of 5) lincRNA-intron (ENSMUSG00000087470.2, intron 3 of 5) 62192 ENSMUSG00000087470.2 ENSMUSG00000087470 ENSMUST00000146587 A630031M04Rik lincRNA Interval_157118 chr8 65453408 65454573 + 0 NA Intergenic Intergenic 86689 ENSMUSG00000064905.1 ENSMUSG00000064905 ENSMUST00000082971 Gm25403 misc_RNA Interval_49800 chr13 115713769 115714083 + 0 NA Intergenic Intergenic 5573 ENSMUSG00000114847.1 ENSMUSG00000114847 ENSMUST00000225821 Gm47892 processed_pseudogene Interval_69240 chr16 91620113 91621639 + 0 NA TTS (ENSMUSG00000022962.15) protein_coding-TTS (ENSMUSG00000022962.15) -1877 ENSMUSG00000039763.10 ENSMUSG00000039763 ENSMUST00000133731 Dnajc28 protein_coding Interval_39477 chr12 88228210 88228482 + 0 NA Intergenic Intergenic -2402 ENSMUSG00000113793.1 ENSMUSG00000113793 ENSMUST00000220822 Gm48553 processed_pseudogene Interval_137158 chr6 68606048 68606580 + 0 NA Intergenic Intergenic 14940 ENSMUSG00000105817.1 ENSMUSG00000105817 ENSMUST00000197637 Igkv15-97 IG_V_pseudogene Interval_7091 chr1 125669004 125670389 + 0 NA Intergenic Intergenic -1080 ENSMUSG00000101015.1 ENSMUSG00000101015 ENSMUST00000191239 Gm18444 processed_pseudogene Interval_8188 chr1 136375123 136376193 + 0 NA Intergenic Intergenic 39836 ENSMUSG00000097403.2 ENSMUSG00000097403 ENSMUST00000194227 9230116N13Rik processed_transcript Interval_111384 chr4 20081169 20081831 + 0 NA Intergenic Intergenic 39448 ENSMUSG00000073987.4 ENSMUSG00000073987 ENSMUST00000098242 Ggh protein_coding Interval_113196 chr4 49520623 49521705 + 0 NA promoter-TSS (ENSMUSG00000039634.12) protein_coding-promoter-TSS (ENSMUSG00000039634.12) -53 ENSMUSG00000039634.12 ENSMUSG00000039634 ENSMUST00000107696 Zfp189 protein_coding Interval_91160 chr2 35580015 35583238 + 0 NA intron (ENSMUSG00000026883.17, intron 1 of 15) protein_coding-intron (ENSMUSG00000026883.17, intron 1 of 16) -23141 ENSMUSG00000086555.2 ENSMUSG00000086555 ENSMUST00000134679 Gm13446 processed_transcript Interval_40465 chr12 105039811 105040418 + 0 NA intron (ENSMUSG00000021102.4, intron 1 of 1) protein_coding-intron (ENSMUSG00000021102.4, intron 1 of 1) 7426 ENSMUSG00000021102.4 ENSMUSG00000021102 ENSMUST00000220494 Glrx5 protein_coding Interval_52013 chr14 34618568 34619111 + 0 NA Intergenic Intergenic -27000 ENSMUSG00000021799.9 ENSMUSG00000021799 ENSMUST00000022331 Opn4 protein_coding Interval_64247 chr16 9753922 9754691 + 0 NA intron (ENSMUSG00000059003.12, intron 4 of 13) protein_coding-intron (ENSMUSG00000059003.12, intron 2 of 11) 240617 ENSMUSG00000059003.12 ENSMUSG00000059003 ENSMUST00000197242 Grin2a protein_coding Interval_83604 chr18 90516257 90516452 + 0 NA intron (ENSMUSG00000024614.7, intron 3 of 12) protein_coding-intron (ENSMUSG00000024614.7, intron 3 of 15) 6082 ENSMUSG00000024614.7 ENSMUSG00000024614 ENSMUST00000236081 Tmx3 protein_coding Interval_72020 chr17 27595484 27597245 + 0 NA exon (ENSMUSG00000024213.14, exon 2 of 2) protein_coding-exon (ENSMUSG00000024213.14, exon 2 of 2) 851 ENSMUSG00000024213.14 ENSMUSG00000024213 ENSMUST00000146321 Nudt3 protein_coding Interval_89457 chr2 20767962 20769157 + 0 NA intron (ENSMUSG00000036617.17, intron 4 of 7) protein_coding-intron (ENSMUSG00000036617.17, intron 9 of 18) -55325 ENSMUSG00000086418.1 ENSMUSG00000086418 ENSMUST00000137186 Gm13362 antisense Interval_26615 chr11 59243492 59244399 + 0 NA Intergenic Intergenic -15783 ENSMUSG00000048076.14 ENSMUSG00000048076 ENSMUST00000061242 Arf1 protein_coding Interval_55881 chr14 101763892 101764306 + 0 NA intron (ENSMUSG00000033060.16, intron 1 of 30) protein_coding-intron (ENSMUSG00000033060.16, intron 1 of 30) -34284 ENSMUSG00000053821.4 ENSMUSG00000053821 ENSMUST00000066461 Gm9922 bidirectional_promoter_lncRNA Interval_35252 chr12 19019624 19020381 + 0 NA Intergenic Intergenic -16256 ENSMUSG00000113307.1 ENSMUSG00000113307 ENSMUST00000221325 Gm48516 processed_pseudogene Interval_33233 chr11 115390394 115390646 + 0 NA exon (ENSMUSG00000050910.5, exon 2 of 5) protein_coding-exon (ENSMUSG00000050910.5, exon 2 of 5) 8604 ENSMUSG00000050910.5 ENSMUSG00000050910 ENSMUST00000053288 Cdr2l protein_coding Interval_159740 chr8 99793616 99793905 + 0 NA Intergenic Intergenic 33878 ENSMUSG00000109939.1 ENSMUSG00000109939 ENSMUST00000211621 Gm19232 processed_pseudogene Interval_168714 chr9 86238263 86239671 + 0 NA Intergenic Intergenic -62952 ENSMUSG00000111418.1 ENSMUSG00000111418 ENSMUST00000216119 Gm18016 processed_pseudogene Interval_32556 chr11 108558229 108558463 + 0 NA intron (ENSMUSG00000020728.17, intron 15 of 24) protein_coding-intron (ENSMUSG00000020728.17, intron 18 of 27) -24682 ENSMUSG00000086761.1 ENSMUSG00000086761 ENSMUST00000137907 Cep112os1 antisense Interval_165014 chr9 43915046 43915528 + 0 NA Intergenic Intergenic -9285 ENSMUSG00000088044.1 ENSMUSG00000088044 ENSMUST00000157419 Gm23326 snRNA Interval_149714 chr7 100879084 100880733 + 0 NA promoter-TSS (ENSMUSG00000032875.8) protein_coding-promoter-TSS (ENSMUSG00000032875.8) 2501 ENSMUSG00000093296.1 ENSMUSG00000093296 ENSMUST00000175555 Mir3102 miRNA Interval_46538 chr13 66939066 66939854 + 0 NA intron (ENSMUSG00000021518.4, intron 1 of 12) protein_coding-intron (ENSMUSG00000021518.4, intron 1 of 12) -5863 ENSMUSG00000021518.4 ENSMUSG00000021518 ENSMUST00000224175 Ptdss1 protein_coding Interval_35872 chr12 31461394 31461605 + 0 NA intron (ENSMUSG00000001225.12, intron 11 of 19) protein_coding-intron (ENSMUSG00000001225.12, intron 11 of 20) 23282 ENSMUSG00000001225.12 ENSMUSG00000001225 ENSMUST00000109275 Slc26a3 protein_coding Interval_92184 chr2 55506734 55506999 + 0 NA intron (ENSMUSG00000026824.11, intron 2 of 2) protein_coding-intron (ENSMUSG00000026824.11, intron 3 of 3) 69710 ENSMUSG00000026824.11 ENSMUSG00000026824 ENSMUST00000112632 Kcnj3 protein_coding Interval_129660 chr5 121586018 121586565 + 0 NA intron (ENSMUSG00000029455.14, intron 1 of 4) protein_coding-intron (ENSMUSG00000029455.14, intron 1 of 12) -7404 ENSMUSG00000106590.1 ENSMUSG00000106590 ENSMUST00000198656 Gm42879 TEC Interval_139763 chr6 108503815 108504269 + 0 NA intron (ENSMUSG00000030102.11, intron 53 of 61) protein_coding-intron (ENSMUSG00000030102.11, intron 53 of 61) 14299 ENSMUSG00000105697.1 ENSMUSG00000105697 ENSMUST00000197023 Mir7661 miRNA Interval_170690 chr9 110107203 110107639 + 0 NA intron (ENSMUSG00000032480.17, intron 5 of 5) protein_coding-intron (ENSMUSG00000032480.17, intron 4 of 21) 1718 ENSMUSG00000098956.1 ENSMUSG00000098956 ENSMUST00000184122 Gm27855 misc_RNA Interval_54539 chr14 70563183 70563876 + 0 NA intron (ENSMUSG00000022096.14, intron 6 of 17) protein_coding-intron (ENSMUSG00000022096.14, intron 8 of 19) 7629 ENSMUSG00000022096.14 ENSMUSG00000022096 ENSMUST00000163060 Hr protein_coding Interval_68049 chr16 64747840 64748750 + 0 NA Intergenic Intergenic 18361 ENSMUSG00000059920.9 ENSMUSG00000059920 ENSMUST00000076991 4930453N24Rik protein_coding Interval_124767 chr5 53732886 53733110 + 0 NA Intergenic Intergenic -25438 ENSMUSG00000029193.7 ENSMUSG00000029193 ENSMUST00000202946 Cckar protein_coding Interval_143066 chr6 149011822 149012047 + 0 NA intron (ENSMUSG00000030313.15, intron 14 of 20) protein_coding-intron (ENSMUSG00000030313.15, intron 14 of 20) 8019 ENSMUSG00000082633.1 ENSMUSG00000082633 ENSMUST00000117470 Gm15779 processed_pseudogene Interval_64976 chr16 17633525 17634034 + 0 NA intron (ENSMUSG00000005899.14, intron 3 of 10) protein_coding-intron (ENSMUSG00000005899.14, intron 10 of 19) -12921 ENSMUSG00000041617.10 ENSMUSG00000041617 ENSMUST00000183279 Ccdc74a protein_coding Interval_166412 chr9 59266174 59266615 + 0 NA Intergenic Intergenic -25164 ENSMUSG00000025236.11 ENSMUSG00000025236 ENSMUST00000215994 Adpgk protein_coding Interval_98219 chr2 150023620 150024427 + 0 NA Intergenic Intergenic 87553 ENSMUSG00000083055.1 ENSMUSG00000083055 ENSMUST00000119999 Gm14140 processed_pseudogene Interval_149081 chr7 92953304 92953664 + 0 NA Intergenic Intergenic -26392 ENSMUSG00000108994.1 ENSMUSG00000108994 ENSMUST00000207656 Gm31663 transcribed_unprocessed_pseudogene Interval_99925 chr2 165843241 165843657 + 0 NA intron (ENSMUSG00000039671.18, intron 4 of 22) protein_coding-intron (ENSMUSG00000039671.18, intron 5 of 23) -14235 ENSMUSG00000085274.1 ENSMUSG00000085274 ENSMUST00000155786 BC046401 processed_transcript Interval_50141 chr14 8237416 8237910 + 0 NA intron (ENSMUSG00000021751.13, intron 13 of 14) protein_coding-intron (ENSMUSG00000021751.13, intron 13 of 14) 20491 ENSMUSG00000021751.13 ENSMUSG00000021751 ENSMUST00000171175 Acox2 protein_coding Interval_126373 chr5 87545955 87546659 + 0 NA Intergenic Intergenic -11161 ENSMUSG00000029269.11 ENSMUSG00000029269 ENSMUST00000120150 Sult1b1 protein_coding Interval_151289 chr7 120713321 120714692 + 0 NA intron (ENSMUSG00000046096.7, intron 1 of 2) protein_coding-intron (ENSMUSG00000046096.7, intron 1 of 2) -12170 ENSMUSG00000046096.7 ENSMUSG00000046096 ENSMUST00000208534 Mosmo protein_coding Interval_7393 chr1 130875092 130875387 + 0 NA TTS (ENSMUSG00000042474.6) protein_coding-TTS (ENSMUSG00000042474.6) 9459 ENSMUSG00000042474.6 ENSMUSG00000042474 ENSMUST00000145446 Fcmr protein_coding Interval_73027 chr17 34234946 34235239 + 0 NA Intergenic Intergenic -6989 ENSMUSG00000041538.16 ENSMUSG00000041538 ENSMUST00000172952 H2-Ob protein_coding Interval_94944 chr2 102091476 102092307 + 0 NA intron (ENSMUSG00000048058.17, intron 2 of 5) protein_coding-intron (ENSMUSG00000048058.17, intron 2 of 5) 34304 ENSMUSG00000085110.1 ENSMUSG00000085110 ENSMUST00000146134 Gm13920 antisense Interval_109421 chr3 142212796 142213065 + 0 NA Intergenic Intergenic -28179 ENSMUSG00000105015.1 ENSMUSG00000105015 ENSMUST00000196903 Gm6059 processed_pseudogene Interval_136108 chr6 51062940 51063863 + 0 NA Intergenic Intergenic 96133 ENSMUSG00000108153.1 ENSMUSG00000108153 ENSMUST00000203677 Gm44402 processed_pseudogene Interval_82268 chr18 69794087 69796899 + 0 NA Intergenic Intergenic -17448 ENSMUSG00000064706.1 ENSMUSG00000064706 ENSMUST00000082772 Gm22508 misc_RNA Interval_36598 chr12 51167851 51168591 + 0 NA Intergenic Intergenic -33519 ENSMUSG00000112926.1 ENSMUSG00000112926 ENSMUST00000218047 Gm7172 processed_pseudogene Interval_86849 chr19 44333477 44334200 + 0 NA intron (ENSMUSG00000050195.8, intron 1 of 1) protein_coding-intron (ENSMUSG00000050195.8, intron 1 of 5) 746 ENSMUSG00000050195.8 ENSMUSG00000050195 ENSMUST00000058856 Scd4 protein_coding Interval_157447 chr8 70428504 70429662 + 0 NA intron (ENSMUSG00000003575.13, intron 1 of 13) protein_coding-intron (ENSMUSG00000003575.13, intron 1 of 13) 2202 ENSMUSG00000003575.13 ENSMUSG00000003575 ENSMUST00000153632 Crtc1 protein_coding Interval_28686 chr11 77754865 77755070 + 0 NA Intergenic Intergenic 7926 ENSMUSG00000081924.1 ENSMUSG00000081924 ENSMUST00000117231 Gm11191 processed_pseudogene Interval_48681 chr13 101110445 101110967 + 0 NA Intergenic Intergenic -71460 ENSMUSG00000096722.2 ENSMUSG00000096722 ENSMUST00000179479 Hmgb1-ps9 processed_pseudogene Interval_108033 chr3 120742400 120743262 + 0 NA intron (ENSMUSG00000098097.7, intron 3 of 3) lincRNA-intron (ENSMUSG00000098097.7, intron 3 of 11) -3270 ENSMUSG00000105207.1 ENSMUSG00000105207 ENSMUST00000200624 Gm42927 processed_pseudogene Interval_25431 chr11 48321956 48322677 + 0 NA Intergenic Intergenic -32003 ENSMUSG00000081952.1 ENSMUSG00000081952 ENSMUST00000120545 Gm12178 processed_pseudogene Interval_148461 chr7 81452978 81455640 + 0 NA intron (ENSMUSG00000025586.17, intron 1 of 3) protein_coding-intron (ENSMUSG00000025586.17, intron 1 of 11) 366 ENSMUSG00000025586.17 ENSMUSG00000025586 ENSMUST00000124937 Cpeb1 protein_coding Interval_1402 chr1 21370991 21372060 + 0 NA TTS (ENSMUSG00000041722.7) protein_coding-TTS (ENSMUSG00000041722.7) -1145 ENSMUSG00000085507.1 ENSMUSG00000085507 ENSMUST00000142979 Gm2709 unprocessed_pseudogene Interval_125066 chr5 64224103 64225139 + 0 NA intron (ENSMUSG00000029174.18, intron 3 of 20) protein_coding-intron (ENSMUSG00000029174.18, intron 2 of 21) -9309 ENSMUSG00000104947.1 ENSMUSG00000104947 ENSMUST00000199677 Gm43721 TEC Interval_119717 chr4 139443414 139443783 + 0 NA intron (ENSMUSG00000066036.14, intron 60 of 105) protein_coding-intron (ENSMUSG00000066036.14, intron 60 of 105) 62939 ENSMUSG00000066036.14 ENSMUSG00000066036 ENSMUST00000135534 Ubr4 protein_coding Interval_139791 chr6 108720835 108721412 + 0 NA Intergenic Intergenic 58077 ENSMUSG00000030103.11 ENSMUSG00000030103 ENSMUST00000204550 Bhlhe40 protein_coding Interval_13153 chr10 12572680 12573863 + 0 NA intron (ENSMUSG00000019820.11, intron 51 of 74) protein_coding-intron (ENSMUSG00000019820.11, intron 50 of 73) 115591 ENSMUSG00000019820.11 ENSMUSG00000019820 ENSMUST00000219135 Utrn protein_coding Interval_79041 chr18 24131625 24131819 + 0 NA Intergenic Intergenic -9769 ENSMUSG00000047989.11 ENSMUSG00000047989 ENSMUST00000125169 Ino80c protein_coding Interval_40923 chr12 109921475 109922885 + 0 NA Intergenic Intergenic 10395 ENSMUSG00000112940.1 ENSMUSG00000112940 ENSMUST00000223541 4930511J24Rik lincRNA Interval_156140 chr8 45056860 45057154 + 0 NA Intergenic Intergenic 5446 ENSMUSG00000066158.7 ENSMUSG00000066158 ENSMUST00000166107 AY512931 lincRNA Interval_43597 chr13 33995083 33995484 + 0 NA intron (ENSMUSG00000060147.15, intron 2 of 2) protein_coding-intron (ENSMUSG00000060147.15, intron 2 of 7) 13048 ENSMUSG00000090628.1 ENSMUSG00000090628 ENSMUST00000165849 Gm17083 processed_pseudogene Interval_172122 chrX 7752126 7752352 + 0 NA exon (ENSMUSG00000082617.3, exon 1 of 1) processed_pseudogene-exon (ENSMUSG00000082617.3, exon 1 of 1) 109 ENSMUSG00000082617.3 ENSMUSG00000082617 ENSMUST00000121084 Smt3h2-ps processed_pseudogene Interval_156425 chr8 48039583 48040866 + 0 NA Intergenic Intergenic 30404 ENSMUSG00000110544.1 ENSMUSG00000110544 ENSMUST00000212389 Gm2607 processed_pseudogene Interval_114457 chr4 78782321 78783363 + 0 NA Intergenic Intergenic 85190 ENSMUSG00000083629.1 ENSMUSG00000083629 ENSMUST00000119326 Gm11262 processed_pseudogene Interval_1469 chr1 23869522 23869719 + 0 NA intron (ENSMUSG00000026155.13, intron 3 of 6) protein_coding-intron (ENSMUSG00000026155.13, intron 4 of 9) 40116 ENSMUSG00000026155.13 ENSMUSG00000026155 ENSMUST00000133398 Smap1 protein_coding Interval_134545 chr6 29467266 29468588 + 0 NA promoter-TSS (ENSMUSG00000004285.12) protein_coding-promoter-TSS (ENSMUSG00000004285.12) -141 ENSMUSG00000004285.12 ENSMUSG00000004285 ENSMUST00000149646 Atp6v1f protein_coding Interval_106546 chr3 97149091 97149498 + 0 NA Intergenic Intergenic -8633 ENSMUSG00000088511.1 ENSMUSG00000088511 ENSMUST00000157886 Gm24435 snRNA Interval_51154 chr14 24224383 24224654 + 0 NA intron (ENSMUSG00000021782.14, intron 1 of 31) protein_coding-intron (ENSMUSG00000021782.14, intron 1 of 30) 18873 ENSMUSG00000091079.1 ENSMUSG00000091079 ENSMUST00000163715 Gm17105 sense_intronic Interval_102252 chr3 20010614 20010953 + 0 NA TTS (ENSMUSG00000027615.14) protein_coding-TTS (ENSMUSG00000027615.14) 24511 ENSMUSG00000027615.14 ENSMUSG00000027615 ENSMUST00000133094 Hps3 protein_coding Interval_173533 chrX 98919599 98920140 + 0 NA Intergenic Intergenic -17404 ENSMUSG00000047694.12 ENSMUSG00000047694 ENSMUST00000140479 Yipf6 protein_coding Interval_61354 chr15 81016377 81018452 + 0 NA intron (ENSMUSG00000042292.18, intron 10 of 13) protein_coding-intron (ENSMUSG00000042292.18, intron 9 of 12) -11004 ENSMUSG00000115976.1 ENSMUSG00000115976 ENSMUST00000230118 Gm31462 antisense Interval_3422 chr1 58195822 58196156 + 0 NA intron (ENSMUSG00000064294.12, intron 34 of 34) protein_coding-intron (ENSMUSG00000064294.12, intron 34 of 34) -15229 ENSMUSG00000038242.12 ENSMUSG00000038242 ENSMUST00000161926 Aox4 protein_coding Interval_56294 chr14 116788053 116789004 + 0 NA Intergenic Intergenic 38313 ENSMUSG00000104296.1 ENSMUSG00000104296 ENSMUST00000193536 Gm38045 TEC Interval_152165 chr7 130314078 130314711 + 0 NA intron (ENSMUSG00000030849.18, intron 2 of 6) protein_coding-intron (ENSMUSG00000030849.18, intron 2 of 6) 39968 ENSMUSG00000082988.3 ENSMUSG00000082988 ENSMUST00000121836 Gm5903 processed_pseudogene Interval_53988 chr14 64125622 64126301 + 0 NA intron (ENSMUSG00000114284.1, intron 2 of 3) protein_coding-intron (ENSMUSG00000054733.9, intron 10 of 10) 9647 ENSMUSG00000114284.1 ENSMUSG00000114284 ENSMUST00000225122 9630015K15Rik antisense Interval_137743 chr6 81986586 81987622 + 0 NA promoter-TSS (ENSMUSG00000108288.1) lincRNA-promoter-TSS (ENSMUSG00000108288.1) -361 ENSMUSG00000108288.1 ENSMUSG00000108288 ENSMUST00000203549 Gm44202 lincRNA Interval_172847 chrX 52105968 52106383 + 0 NA intron (ENSMUSG00000031119.4, intron 1 of 8) protein_coding-intron (ENSMUSG00000031119.4, intron 1 of 8) 59077 ENSMUSG00000031119.4 ENSMUSG00000031119 ENSMUST00000033450 Gpc4 protein_coding Interval_35947 chr12 32417790 32419028 + 0 NA intron (ENSMUSG00000112865.1, intron 1 of 6) lincRNA-intron (ENSMUSG00000112865.1, intron 1 of 6) 13514 ENSMUSG00000112865.1 ENSMUSG00000112865 ENSMUST00000218751 Gm40375 lincRNA Interval_132372 chr5 144545458 144546565 + 0 NA exon (ENSMUSG00000059991.7, exon 1 of 5) protein_coding-exon (ENSMUSG00000059991.7, exon 1 of 5) 109 ENSMUSG00000059991.7 ENSMUSG00000059991 ENSMUST00000071782 Nptx2 protein_coding Interval_25045 chr11 43487909 43488778 + 0 NA intron (ENSMUSG00000046491.10, intron 2 of 2) protein_coding-intron (ENSMUSG00000046491.10, intron 3 of 3) 14067 ENSMUSG00000046491.10 ENSMUSG00000046491 ENSMUST00000151912 C1qtnf2 protein_coding Interval_49571 chr13 113041276 113041716 + 0 NA exon (ENSMUSG00000074650.2, exon 1 of 1) TEC-exon (ENSMUSG00000074650.2, exon 1 of 1) 747 ENSMUSG00000074650.2 ENSMUSG00000074650 ENSMUST00000099162 Gm10735 TEC Interval_125259 chr5 65717808 65718918 + 0 NA Intergenic Intergenic -36019 ENSMUSG00000107050.1 ENSMUSG00000107050 ENSMUST00000202959 C030017G13Rik TEC Interval_154963 chr8 25324594 25325154 + 0 NA Intergenic Intergenic -18604 ENSMUSG00000110140.1 ENSMUSG00000110140 ENSMUST00000209774 5430421F17Rik lincRNA Interval_166261 chr9 57861376 57862484 + 0 NA Intergenic Intergenic -50704 ENSMUSG00000055720.10 ENSMUSG00000055720 ENSMUST00000215936 Ubl7 protein_coding Interval_155590 chr8 34925950 34926803 + 0 NA intron (ENSMUSG00000031529.5, intron 2 of 26) protein_coding-intron (ENSMUSG00000031529.5, intron 2 of 26) -7608 ENSMUSG00000031529.5 ENSMUSG00000031529 ENSMUST00000211065 Tnks protein_coding Interval_167796 chr9 72751941 72752272 + 0 NA Intergenic Intergenic 23966 ENSMUSG00000102411.1 ENSMUSG00000102411 ENSMUST00000194508 Gm36936 TEC Interval_9434 chr1 157076369 157077615 + 0 NA Intergenic Intergenic -22958 ENSMUSG00000101768.1 ENSMUSG00000101768 ENSMUST00000190681 Gm28694 lincRNA Interval_27071 chr11 62675174 62676397 + 0 NA Intergenic Intergenic -21433 ENSMUSG00000081852.1 ENSMUSG00000081852 ENSMUST00000119536 Gm12281 processed_pseudogene Interval_10308 chr1 168381813 168383107 + 0 NA intron (ENSMUSG00000052534.15, intron 2 of 7) protein_coding-intron (ENSMUSG00000052534.15, intron 2 of 6) -31652 ENSMUSG00000102594.1 ENSMUSG00000102594 ENSMUST00000193594 Gm38381 TEC Interval_141567 chr6 129364005 129364540 + 0 NA exon (ENSMUSG00000053063.11, exon 6 of 6) protein_coding-exon (ENSMUSG00000053063.11, exon 6 of 6) 21581 ENSMUSG00000053063.11 ENSMUSG00000053063 ENSMUST00000133756 Clec12a protein_coding Interval_122630 chr5 24347666 24348792 + 0 NA intron (ENSMUSG00000038319.14, intron 2 of 14) protein_coding-intron (ENSMUSG00000038319.14, intron 2 of 14) 14306 ENSMUSG00000086729.1 ENSMUSG00000086729 ENSMUST00000144193 Gm15589 antisense Interval_7951 chr1 134747624 134748222 + 0 NA promoter-TSS (ENSMUSG00000026452.15) protein_coding-promoter-TSS (ENSMUSG00000026452.15) 54062 ENSMUSG00000103614.1 ENSMUSG00000103614 ENSMUST00000192808 Gm37949 TEC Interval_19741 chr10 108414850 108415668 + 0 NA Intergenic Intergenic -12808 ENSMUSG00000093762.1 ENSMUSG00000093762 ENSMUST00000177317 Gm25591 miRNA Interval_118183 chr4 129406331 129407163 + 0 NA Intergenic Intergenic 25782 ENSMUSG00000048485.12 ENSMUSG00000048485 ENSMUST00000124364 Zbtb8b protein_coding Interval_10420 chr1 170694611 170695388 + 0 NA Intergenic Intergenic 50467 ENSMUSG00000038463.8 ENSMUSG00000038463 ENSMUST00000046792 Olfml2b protein_coding Interval_150718 chr7 113759140 113759689 + 0 NA Intergenic Intergenic -6760 ENSMUSG00000038156.16 ENSMUSG00000038156 ENSMUST00000084696 Spon1 protein_coding Interval_87611 chr19 53723759 53724215 + 0 NA intron (ENSMUSG00000043639.15, intron 1 of 13) protein_coding-intron (ENSMUSG00000043639.15, intron 1 of 13) 44323 ENSMUSG00000089807.1 ENSMUSG00000089807 ENSMUST00000161107 Gm16298 processed_pseudogene Interval_74057 chr17 46313856 46314140 + 0 NA exon (ENSMUSG00000032842.13, exon 8 of 13) protein_coding-exon (ENSMUSG00000032842.13, exon 8 of 13) 13978 ENSMUSG00000032842.13 ENSMUSG00000032842 ENSMUST00000170168 Abcc10 protein_coding Interval_104533 chr3 67491373 67492860 + 0 NA intron (ENSMUSG00000049404.7, intron 2 of 5) protein_coding-intron (ENSMUSG00000049404.7, intron 2 of 5) 15138 ENSMUSG00000103703.2 ENSMUSG00000103703 ENSMUST00000195639 Gm42568 TEC Interval_3577 chr1 59689952 59690715 + 0 NA exon (ENSMUSG00000026020.9, exon 1 of 4) protein_coding-exon (ENSMUSG00000026020.9, exon 1 of 4) -1601 ENSMUSG00000077345.1 ENSMUSG00000077345 ENSMUST00000104157 Snord70 snoRNA Interval_21656 chr11 3500653 3500892 + 0 NA intron (ENSMUSG00000034570.12, intron 4 of 7) protein_coding-intron (ENSMUSG00000034570.12, intron 5 of 12) 4027 ENSMUSG00000034570.12 ENSMUSG00000034570 ENSMUST00000183684 Inpp5j protein_coding Interval_87890 chr19 56909199 56909469 + 0 NA exon (ENSMUSG00000025082.8, exon 12 of 14) protein_coding-exon (ENSMUSG00000025082.8, exon 12 of 14) 27904 ENSMUSG00000025083.18 ENSMUSG00000025083 ENSMUST00000132851 Afap1l2 protein_coding Interval_70026 chr17 4726802 4727179 + 0 NA Intergenic Intergenic 48970 ENSMUSG00000096200.1 ENSMUSG00000096200 ENSMUST00000180078 Gm23186 snRNA Interval_7155 chr1 127279283 127279555 + 0 NA intron (ENSMUSG00000036155.13, intron 2 of 10) protein_coding-intron (ENSMUSG00000036155.13, intron 2 of 17) 3689 ENSMUSG00000099471.1 ENSMUSG00000099471 ENSMUST00000170338 Gm8451 processed_pseudogene Interval_91956 chr2 52026895 52027242 + 0 NA Intergenic Intergenic -10941 ENSMUSG00000053475.5 ENSMUSG00000053475 ENSMUST00000065927 Tnfaip6 protein_coding Interval_31866 chr11 103449440 103451601 + 0 NA TTS (ENSMUSG00000078632.4) protein_coding-TTS (ENSMUSG00000078632.4) 28784 ENSMUSG00000110636.1 ENSMUSG00000110636 ENSMUST00000212331 Gm39397 lincRNA Interval_18226 chr10 83916459 83916693 + 0 NA Intergenic Intergenic 14724 ENSMUSG00000112133.1 ENSMUSG00000112133 ENSMUST00000217741 Gm47247 processed_pseudogene Interval_15319 chr10 44471115 44471391 + 0 NA intron (ENSMUSG00000038151.13, intron 1 of 3) protein_coding-intron (ENSMUSG00000038151.13, intron 1 of 3) -14043 ENSMUSG00000038151.13 ENSMUSG00000038151 ENSMUST00000167340 Prdm1 protein_coding Interval_72590 chr17 30859985 30860565 + 0 NA intron (ENSMUSG00000033826.10, intron 3 of 4) protein_coding-intron (ENSMUSG00000033826.10, intron 91 of 92) -2839 ENSMUSG00000117760.1 ENSMUSG00000117760 ENSMUST00000237260 Gm41561 antisense Interval_100900 chr2 173237938 173239624 + 0 NA intron (ENSMUSG00000038400.15, intron 1 of 3) protein_coding-intron (ENSMUSG00000038400.15, intron 1 of 3) -19884 ENSMUSG00000027514.14 ENSMUSG00000027514 ENSMUST00000109116 Zbp1 protein_coding Interval_92615 chr2 61513791 61514323 + 0 NA Intergenic Intergenic 21291 ENSMUSG00000088340.1 ENSMUSG00000088340 ENSMUST00000157715 Gm22338 snoRNA Interval_59554 chr15 55249108 55249846 + 0 NA intron (ENSMUSG00000022419.16, intron 8 of 8) protein_coding-intron (ENSMUSG00000022419.16, intron 8 of 8) 13126 ENSMUSG00000095792.1 ENSMUSG00000095792 ENSMUST00000179457 Gm26296 snRNA Interval_11413 chr1 181818012 181818446 + 0 NA intron (ENSMUSG00000004880.11, intron 2 of 4) protein_coding-intron (ENSMUSG00000004880.11, intron 11 of 13) -4529 ENSMUSG00000064970.1 ENSMUSG00000064970 ENSMUST00000083036 Gm23690 snRNA Interval_90911 chr2 33436225 33436451 + 0 NA Intergenic Intergenic -5021 ENSMUSG00000068966.10 ENSMUSG00000068966 ENSMUST00000134589 Zbtb34 protein_coding Interval_70910 chr17 15807749 15807971 + 0 NA intron (ENSMUSG00000048027.9, intron 2 of 2) protein_coding-intron (ENSMUSG00000048027.9, intron 2 of 2) 23025 ENSMUSG00000048027.9 ENSMUSG00000048027 ENSMUST00000231985 Rgmb protein_coding Interval_12887 chr10 7287641 7289116 + 0 NA Intergenic Intergenic 102405 ENSMUSG00000112057.1 ENSMUSG00000112057 ENSMUST00000220179 Gm21321 processed_pseudogene Interval_59731 chr15 58939478 58939800 + 0 NA TTS (ENSMUSG00000022354.4) protein_coding-TTS (ENSMUSG00000022354.4) 5831 ENSMUSG00000022354.4 ENSMUSG00000022354 ENSMUST00000228595 Ndufb9 protein_coding Interval_7345 chr1 130186398 130187548 + 0 NA intron (ENSMUSG00000042581.14, intron 3 of 9) protein_coding-intron (ENSMUSG00000042581.14, intron 21 of 27) -9007 ENSMUSG00000100623.1 ENSMUSG00000100623 ENSMUST00000190086 Gm29428 processed_pseudogene Interval_69506 chr16 93934139 93935576 + 0 NA TTS (ENSMUSG00000047109.13) protein_coding-TTS (ENSMUSG00000047109.13) 7527 ENSMUSG00000047109.13 ENSMUSG00000047109 ENSMUST00000232406 Cldn14 protein_coding Interval_106309 chr3 95281186 95283616 + 0 NA promoter-TSS (ENSMUSG00000015711.8) protein_coding-promoter-TSS (ENSMUSG00000015711.8) -5547 ENSMUSG00000038712.16 ENSMUSG00000038712 ENSMUST00000133762 Mindy1 protein_coding Interval_44770 chr13 48468375 48469050 + 0 NA Intergenic Intergenic 44682 ENSMUSG00000050954.15 ENSMUSG00000050954 ENSMUST00000177474 Zfp169 protein_coding Interval_139643 chr6 104800234 104800416 + 0 NA intron (ENSMUSG00000030092.14, intron 12 of 23) protein_coding-intron (ENSMUSG00000030092.14, intron 11 of 22) 264828 ENSMUSG00000107836.1 ENSMUSG00000107836 ENSMUST00000204430 Gm5315 processed_pseudogene Interval_148335 chr7 80576183 80577119 + 0 NA Intergenic Intergenic 27132 ENSMUSG00000108643.1 ENSMUSG00000108643 ENSMUST00000206056 Gm44931 TEC Interval_67375 chr16 48213670 48214180 + 0 NA Intergenic Intergenic -4680 ENSMUSG00000048164.9 ENSMUSG00000048164 ENSMUST00000062591 Gm7204 processed_pseudogene Interval_138353 chr6 87545305 87546236 + 0 NA Intergenic Intergenic 12363 ENSMUSG00000108184.1 ENSMUSG00000108184 ENSMUST00000203063 Gm44198 TEC Interval_143655 chr7 14021264 14021513 + 0 NA Intergenic Intergenic 14730 ENSMUSG00000099744.1 ENSMUSG00000099744 ENSMUST00000186718 Tmem167-ps3 processed_pseudogene Interval_99829 chr2 165175826 165176208 + 0 NA intron (ENSMUSG00000053166.14, intron 1 of 10) protein_coding-intron (ENSMUSG00000053166.14, intron 2 of 11) 5442 ENSMUSG00000053166.14 ENSMUSG00000053166 ENSMUST00000138643 Cdh22 protein_coding Interval_101239 chr2 179728786 179729483 + 0 NA intron (ENSMUSG00000000305.12, intron 2 of 2) protein_coding-intron (ENSMUSG00000000305.12, intron 2 of 15) -48029 ENSMUSG00000000305.12 ENSMUSG00000000305 ENSMUST00000098996 Cdh4 protein_coding Interval_68347 chr16 73858664 73859002 + 0 NA Intergenic Intergenic 103027 ENSMUSG00000052516.19 ENSMUSG00000052516 ENSMUST00000156010 Robo2 protein_coding Interval_38365 chr12 77813513 77814200 + 0 NA TTS (ENSMUSG00000077707.1) snoRNA-TTS (ENSMUSG00000077707.1) 953 ENSMUSG00000077707.1 ENSMUSG00000077707 ENSMUST00000104519 Gm24070 snoRNA Interval_135375 chr6 38698333 38698971 + 0 NA intron (ENSMUSG00000061436.15, intron 14 of 14) protein_coding-intron (ENSMUSG00000061436.15, intron 14 of 14) 34773 ENSMUSG00000079598.4 ENSMUSG00000079598 ENSMUST00000238216 Clec2l protein_coding Interval_150567 chr7 112494110 112494783 + 0 NA intron (ENSMUSG00000030770.15, intron 2 of 13) protein_coding-intron (ENSMUSG00000030770.15, intron 1 of 12) 41237 ENSMUSG00000085049.1 ENSMUSG00000085049 ENSMUST00000154848 Parvaos antisense Interval_44488 chr13 45342115 45342600 + 0 NA Intergenic Intergenic -47361 ENSMUSG00000088203.1 ENSMUSG00000088203 ENSMUST00000157578 Gm23755 misc_RNA Interval_133567 chr6 6873662 6875264 + 0 NA Intergenic Intergenic -2830 ENSMUSG00000098326.1 ENSMUSG00000098326 ENSMUST00000184182 Dlx6os1 misc_RNA Interval_29056 chr11 80089077 80090186 + 0 NA exon (ENSMUSG00000017550.14, exon 1 of 23) protein_coding-exon (ENSMUSG00000017550.14, exon 1 of 23) -8770 ENSMUSG00000017561.16 ENSMUSG00000017561 ENSMUST00000178280 Crlf3 protein_coding Interval_59226 chr15 49130759 49130950 + 0 NA exon (ENSMUSG00000114976.1, exon 1 of 1) processed_pseudogene-exon (ENSMUSG00000114976.1, exon 1 of 1) 110 ENSMUSG00000114976.1 ENSMUSG00000114976 ENSMUST00000227927 Gm2333 processed_pseudogene Interval_77675 chr17 94045933 94046176 + 0 NA Intergenic Intergenic 86217 ENSMUSG00000117543.1 ENSMUSG00000117543 ENSMUST00000235005 Gm50004 processed_pseudogene Interval_107994 chr3 119158357 119159161 + 0 NA intron (ENSMUSG00000033308.16, intron 16 of 22) protein_coding-intron (ENSMUSG00000033308.16, intron 16 of 22) 290515 ENSMUSG00000106542.1 ENSMUSG00000106542 ENSMUST00000197510 Gm43410 TEC Interval_167393 chr9 68640319 68641321 + 0 NA Intergenic Intergenic -13071 ENSMUSG00000032238.17 ENSMUSG00000032238 ENSMUST00000113624 Rora protein_coding Interval_80973 chr18 51879078 51879925 + 0 NA Intergenic Intergenic -13620 ENSMUSG00000069379.3 ENSMUSG00000069379 ENSMUST00000091905 Gm4950 processed_pseudogene Interval_80734 chr18 46669068 46670955 + 0 NA Intergenic Intergenic 39204 ENSMUSG00000117780.1 ENSMUSG00000117780 ENSMUST00000236340 Gm3734 lincRNA Interval_87488 chr19 53007673 53008717 + 0 NA intron (ENSMUSG00000025027.18, intron 7 of 19) protein_coding-intron (ENSMUSG00000025027.18, intron 7 of 21) 2561 ENSMUSG00000098730.1 ENSMUSG00000098730 ENSMUST00000184510 Mir6407 miRNA Interval_56651 chr14 121151168 121151390 + 0 NA intron (ENSMUSG00000025555.14, intron 1 of 7) protein_coding-intron (ENSMUSG00000025555.14, intron 2 of 26) 49200 ENSMUSG00000025555.14 ENSMUSG00000025555 ENSMUST00000137971 Farp1 protein_coding Interval_118792 chr4 133739997 133740292 + 0 NA intron (ENSMUSG00000007880.16, intron 1 of 19) protein_coding-intron (ENSMUSG00000007880.16, intron 1 of 19) -19368 ENSMUSG00000007880.16 ENSMUSG00000007880 ENSMUST00000139709 Arid1a protein_coding Interval_127456 chr5 104072373 104073028 + 0 NA promoter-TSS (ENSMUSG00000105261.1) TEC-promoter-TSS (ENSMUSG00000105261.1) -375 ENSMUSG00000105261.1 ENSMUSG00000105261 ENSMUST00000198340 Gm43333 TEC Interval_152334 chr7 131917558 131917744 + 0 NA intron (ENSMUSG00000030849.18, intron 2 of 6) protein_coding-intron (ENSMUSG00000030849.18, intron 2 of 6) 15003 ENSMUSG00000109340.1 ENSMUSG00000109340 ENSMUST00000208929 Gm44548 processed_pseudogene Interval_135439 chr6 39372511 39374520 + 0 NA promoter-TSS (ENSMUSG00000029924.12) protein_coding-promoter-TSS (ENSMUSG00000029924.12) 4142 ENSMUSG00000029924.12 ENSMUSG00000029924 ENSMUST00000202785 Slc37a3 protein_coding Interval_166577 chr9 61042347 61042614 + 0 NA intron (ENSMUSG00000111147.1, intron 2 of 6) lincRNA-intron (ENSMUSG00000111147.1, intron 2 of 6) 10268 ENSMUSG00000111147.1 ENSMUSG00000111147 ENSMUST00000216170 Gm33699 lincRNA Interval_159952 chr8 105374340 105375240 + 0 NA promoter-TSS (ENSMUSG00000014782.16) protein_coding-promoter-TSS (ENSMUSG00000014782.16) 971 ENSMUSG00000014782.16 ENSMUSG00000014782 ENSMUST00000161672 Plekhg4 protein_coding Interval_21883 chr11 4953570 4954397 + 0 NA Intergenic Intergenic -5919 ENSMUSG00000020396.8 ENSMUSG00000020396 ENSMUST00000093369 Nefh protein_coding Interval_21493 chr10 128909109 128911312 + 0 NA promoter-TSS (ENSMUSG00000025351.14) protein_coding-promoter-TSS (ENSMUSG00000025351.14) 865 ENSMUSG00000025351.14 ENSMUSG00000025351 ENSMUST00000218450 Cd63 protein_coding Interval_101604 chr3 7578803 7580179 + 0 NA intron (ENSMUSG00000040329.14, intron 2 of 4) protein_coding-intron (ENSMUSG00000040329.14, intron 2 of 4) -33214 ENSMUSG00000097804.1 ENSMUSG00000097804 ENSMUST00000181286 Gm16685 antisense Interval_59107 chr15 44016497 44017153 + 0 NA Intergenic Intergenic -146789 ENSMUSG00000054409.5 ENSMUSG00000054409 ENSMUST00000067469 Tmem74 protein_coding Interval_36174 chr12 37773710 37774977 + 0 NA Intergenic Intergenic -43383 ENSMUSG00000036095.11 ENSMUSG00000036095 ENSMUST00000220606 Dgkb protein_coding Interval_101451 chr2 181510086 181510547 + 0 NA intron (ENSMUSG00000000827.18, intron 6 of 7) protein_coding-intron (ENSMUSG00000000827.18, intron 5 of 6) -2234 ENSMUSG00000088378.1 ENSMUSG00000088378 ENSMUST00000157753 Gm25184 snRNA Interval_124679 chr5 53199864 53200265 + 0 NA exon (ENSMUSG00000029189.10, exon 2 of 24) protein_coding-exon (ENSMUSG00000029189.10, exon 2 of 24) 13863 ENSMUSG00000029189.10 ENSMUSG00000029189 ENSMUST00000199919 Sel1l3 protein_coding Interval_139187 chr6 97030965 97031195 + 0 NA intron (ENSMUSG00000046500.8, intron 1 of 5) protein_coding-intron (ENSMUSG00000046500.8, intron 1 of 5) 29313 ENSMUSG00000046500.8 ENSMUSG00000046500 ENSMUST00000203930 Tafa4 protein_coding Interval_158873 chr8 87628703 87630443 + 0 NA Intergenic Intergenic -7084 ENSMUSG00000089301.1 ENSMUSG00000089301 ENSMUST00000158676 Gm24841 misc_RNA Interval_53313 chr14 55990139 55990358 + 0 NA TTS (ENSMUSG00000115757.1) unprocessed_pseudogene-TTS (ENSMUSG00000115757.1) 1185 ENSMUSG00000115757.1 ENSMUSG00000115757 ENSMUST00000228271 Gm48934 unprocessed_pseudogene Interval_167138 chr9 65599024 65599574 + 0 NA Intergenic Intergenic 12094 ENSMUSG00000041064.14 ENSMUSG00000041064 ENSMUST00000141046 Pif1 protein_coding Interval_138008 chr6 84115421 84115724 + 0 NA intron (ENSMUSG00000033788.15, intron 29 of 55) protein_coding-intron (ENSMUSG00000033788.15, intron 29 of 54) -8565 ENSMUSG00000087001.2 ENSMUSG00000087001 ENSMUST00000137673 Gm15475 antisense Interval_24304 chr11 32220764 32222642 + 0 NA intron (ENSMUSG00000020282.18, intron 1 of 2) protein_coding-intron (ENSMUSG00000020282.18, intron 1 of 17) 541 ENSMUSG00000020282.18 ENSMUSG00000020282 ENSMUST00000144902 Rhbdf1 protein_coding Interval_141961 chr6 136096346 136096975 + 0 NA intron (ENSMUSG00000030209.14, intron 1 of 1) protein_coding-intron (ENSMUSG00000030209.14, intron 2 of 13) -76401 ENSMUSG00000097496.1 ENSMUSG00000097496 ENSMUST00000181537 Gm26653 antisense Interval_49054 chr13 107495602 107496094 + 0 NA Intergenic Intergenic 26026 ENSMUSG00000114780.1 ENSMUSG00000114780 ENSMUST00000223617 AI197445 lincRNA Interval_59974 chr15 62470609 62470833 + 0 NA Intergenic Intergenic -97254 ENSMUSG00000115862.1 ENSMUSG00000115862 ENSMUST00000230029 Gm41333 lincRNA Interval_6329 chr1 105982939 105983161 + 0 NA intron (ENSMUSG00000099843.1, intron 2 of 2) lincRNA-intron (ENSMUSG00000099843.1, intron 2 of 2) 7202 ENSMUSG00000099843.1 ENSMUSG00000099843 ENSMUST00000188519 Gm7160 lincRNA Interval_72070 chr17 27829088 27829696 + 0 NA Intergenic Intergenic -8826 ENSMUSG00000056692.13 ENSMUSG00000056692 ENSMUST00000233035 Ilrun protein_coding Interval_4568 chr1 75157044 75157717 + 0 NA Intergenic Intergenic -11548 ENSMUSG00000026197.12 ENSMUSG00000026197 ENSMUST00000186227 Zfand2b protein_coding Interval_29299 chr11 82770234 82770787 + 0 NA Intergenic Intergenic 6165 ENSMUSG00000046010.7 ENSMUSG00000046010 ENSMUST00000056677 Zfp830 protein_coding Interval_75079 chr17 63066176 63066343 + 0 NA intron (ENSMUSG00000023965.13, intron 5 of 5) protein_coding-intron (ENSMUSG00000023965.13, intron 8 of 8) 30741 ENSMUSG00000089586.1 ENSMUSG00000089586 ENSMUST00000158961 Gm25348 rRNA Interval_128066 chr5 110635845 110637160 + 0 NA Intergenic Intergenic 16878 ENSMUSG00000033294.11 ENSMUSG00000033294 ENSMUST00000199795 Noc4l protein_coding Interval_125126 chr5 64724770 64726054 + 0 NA intron (ENSMUSG00000097640.7, intron 1 of 4) processed_transcript-intron (ENSMUSG00000097640.7, intron 1 of 4) -26891 ENSMUSG00000097668.2 ENSMUSG00000097668 ENSMUST00000180650 Gm26761 lincRNA Interval_58264 chr15 31487028 31488287 + 0 NA promoter-TSS (ENSMUSG00000115383.1) sense_overlapping-promoter-TSS (ENSMUSG00000115383.1) -728 ENSMUSG00000115383.1 ENSMUSG00000115383 ENSMUST00000227757 Gm49216 sense_overlapping Interval_47245 chr13 79330490 79331008 + 0 NA Intergenic Intergenic -35410 ENSMUSG00000102355.1 ENSMUSG00000102355 ENSMUST00000195732 Gm38349 TEC Interval_124778 chr5 53930326 53931270 + 0 NA Intergenic Intergenic 12354 ENSMUSG00000107173.1 ENSMUSG00000107173 ENSMUST00000201049 Gm43266 TEC Interval_4127 chr1 69790406 69791117 + 0 NA Intergenic Intergenic 19893 ENSMUSG00000103402.1 ENSMUSG00000103402 ENSMUST00000194308 Gm37930 TEC Interval_84811 chr19 16985034 16985457 + 0 NA intron (ENSMUSG00000039126.10, intron 1 of 6) protein_coding-intron (ENSMUSG00000039126.10, intron 1 of 19) 65912 ENSMUSG00000118126.1 ENSMUSG00000118126 ENSMUST00000236072 Gm32341 lincRNA Interval_60797 chr15 76839397 76839815 + 0 NA Intergenic Intergenic -21436 ENSMUSG00000033697.16 ENSMUSG00000033697 ENSMUST00000176736 Arhgap39 protein_coding Interval_2520 chr1 39922823 39924282 + 0 NA intron (ENSMUSG00000026074.15, intron 2 of 31) protein_coding-intron (ENSMUSG00000026074.15, intron 2 of 30) 22373 ENSMUSG00000026074.15 ENSMUSG00000026074 ENSMUST00000191657 Map4k4 protein_coding Interval_136512 chr6 55080536 55080723 + 0 NA Intergenic Intergenic 32566 ENSMUSG00000029777.10 ENSMUSG00000029777 ENSMUST00000203334 Gars protein_coding Interval_94249 chr2 86402308 86402507 + 0 NA Intergenic Intergenic -4389 ENSMUSG00000100458.2 ENSMUSG00000100458 ENSMUST00000118335 Olfr1060-ps1 unprocessed_pseudogene Interval_95760 chr2 115899252 115899546 + 0 NA intron (ENSMUSG00000027210.20, intron 3 of 6) protein_coding-intron (ENSMUSG00000027210.20, intron 9 of 11) -30532 ENSMUSG00000027210.20 ENSMUSG00000027210 ENSMUST00000138526 Meis2 protein_coding Interval_23311 chr11 21300733 21301108 + 0 NA intron (ENSMUSG00000020128.15, intron 1 of 3) protein_coding-intron (ENSMUSG00000020128.15, intron 12 of 22) 5360 ENSMUSG00000084048.1 ENSMUSG00000084048 ENSMUST00000120479 Gm12042 processed_pseudogene Interval_82031 chr18 67278497 67279530 + 0 NA Intergenic Intergenic -29576 ENSMUSG00000024525.7 ENSMUSG00000024525 ENSMUST00000237149 Impa2 protein_coding Interval_74311 chr17 48759660 48760077 + 0 NA Intergenic Intergenic -21122 ENSMUSG00000110276.1 ENSMUSG00000110276 ENSMUST00000209681 Gm45330 lincRNA Interval_34969 chr12 15935518 15936235 + 0 NA Intergenic Intergenic 44612 ENSMUSG00000113739.1 ENSMUSG00000113739 ENSMUST00000221010 Gm48584 lincRNA Interval_4301 chr1 72566824 72567482 + 0 NA Intergenic Intergenic -16098 ENSMUSG00000039354.16 ENSMUSG00000039354 ENSMUST00000126832 Smarcal1 protein_coding Interval_94148 chr2 84684850 84685876 + 0 NA promoter-TSS (ENSMUSG00000027080.6) protein_coding-promoter-TSS (ENSMUSG00000027080.6) -270 ENSMUSG00000027080.6 ENSMUSG00000027080 ENSMUST00000141595 Med19 protein_coding Interval_19006 chr10 93733476 93734324 + 0 NA intron (ENSMUSG00000020019.4, intron 6 of 9) protein_coding-intron (ENSMUSG00000020019.4, intron 6 of 9) -5693 ENSMUSG00000086891.2 ENSMUSG00000086891 ENSMUST00000131387 Gm15963 antisense Interval_127708 chr5 106925501 106927091 + 0 NA promoter-TSS (ENSMUSG00000043410.16) protein_coding-promoter-TSS (ENSMUSG00000043410.16) -444 ENSMUSG00000043410.16 ENSMUSG00000043410 ENSMUST00000200249 Hfm1 protein_coding Interval_17334 chr10 75937326 75938473 + 0 NA TTS (ENSMUSG00000049422.7) protein_coding-TTS (ENSMUSG00000049422.7) -1403 ENSMUSG00000000901.17 ENSMUSG00000000901 ENSMUST00000219728 Mmp11 protein_coding Interval_165188 chr9 45115625 45116461 + 0 NA intron (ENSMUSG00000074385.3, intron 1 of 2) lincRNA-intron (ENSMUSG00000074385.3, intron 1 of 2) -1739 ENSMUSG00000070304.12 ENSMUSG00000070304 ENSMUST00000093855 Scn2b protein_coding Interval_85424 chr19 25683604 25684223 + 0 NA Intergenic Intergenic 11502 ENSMUSG00000048138.10 ENSMUSG00000048138 ENSMUST00000053068 Dmrt2 protein_coding Interval_27167 chr11 63641404 63642697 + 0 NA Intergenic Intergenic -41127 ENSMUSG00000082256.1 ENSMUSG00000082256 ENSMUST00000119770 Gm12287 processed_pseudogene Interval_4707 chr1 77461856 77462171 + 0 NA intron (ENSMUSG00000026235.14, intron 2 of 15) protein_coding-intron (ENSMUSG00000026235.14, intron 3 of 17) 34755 ENSMUSG00000099141.1 ENSMUSG00000099141 ENSMUST00000184495 Mir6352 miRNA Interval_97969 chr2 146272955 146273123 + 0 NA intron (ENSMUSG00000037110.20, intron 39 of 41) protein_coding-intron (ENSMUSG00000037110.20, intron 38 of 40) 13753 ENSMUSG00000085958.1 ENSMUSG00000085958 ENSMUST00000135360 A930019D19Rik antisense Interval_120526 chr4 149149212 149149593 + 0 NA TTS (ENSMUSG00000028961.15) protein_coding-TTS (ENSMUSG00000028961.15) -6014 ENSMUSG00000080746.3 ENSMUSG00000080746 ENSMUST00000120596 Rpsa-ps12 processed_pseudogene Interval_42254 chr13 11038164 11039052 + 0 NA Intergenic Intergenic 64185 ENSMUSG00000113673.1 ENSMUSG00000113673 ENSMUST00000221075 Gm47486 lincRNA Interval_90523 chr2 30936985 30939153 + 0 NA Intergenic Intergenic -8206 ENSMUSG00000050737.13 ENSMUSG00000050737 ENSMUST00000126588 Ptges protein_coding Interval_132687 chr5 147159113 147159828 + 0 NA Intergenic Intergenic -29226 ENSMUSG00000053129.5 ENSMUSG00000053129 ENSMUST00000065382 Gsx1 protein_coding Interval_94321 chr2 88710980 88711807 + 0 NA Intergenic Intergenic -6796 ENSMUSG00000075120.4 ENSMUSG00000075120 ENSMUST00000104892 Olfr1196 protein_coding Interval_129697 chr5 121836395 121837748 + 0 NA promoter-TSS (ENSMUSG00000042594.16) protein_coding-promoter-TSS (ENSMUSG00000042594.16) 1876 ENSMUSG00000104872.1 ENSMUSG00000104872 ENSMUST00000198145 1700008B11Rik antisense Interval_56465 chr14 118937320 118938534 + 0 NA promoter-TSS (ENSMUSG00000022136.8) protein_coding-promoter-TSS (ENSMUSG00000022136.8) -49 ENSMUSG00000022136.8 ENSMUSG00000022136 ENSMUST00000022734 Dnajc3 protein_coding Interval_172608 chrX 38321753 38322008 + 0 NA intron (ENSMUSG00000016327.9, intron 2 of 7) protein_coding-intron (ENSMUSG00000016327.9, intron 2 of 7) 5696 ENSMUSG00000016327.9 ENSMUSG00000016327 ENSMUST00000115134 Atp1b4 protein_coding Interval_42993 chr13 22702832 22703828 + 0 NA intron (ENSMUSG00000085221.2, intron 2 of 2) antisense-intron (ENSMUSG00000085221.2, intron 2 of 2) -11364 ENSMUSG00000083673.3 ENSMUSG00000083673 ENSMUST00000121014 Vmn1r-ps111 unprocessed_pseudogene Interval_127611 chr5 105771832 105772770 + 0 NA intron (ENSMUSG00000046079.16, intron 1 of 2) protein_coding-intron (ENSMUSG00000046079.16, intron 2 of 2) 25412 ENSMUSG00000067058.7 ENSMUSG00000067058 ENSMUST00000132586 Rps15a-ps5 processed_pseudogene Interval_25870 chr11 52265015 52265361 + 0 NA intron (ENSMUSG00000000782.16, intron 3 of 10) protein_coding-intron (ENSMUSG00000000782.16, intron 2 of 9) 9689 ENSMUSG00000000782.16 ENSMUSG00000000782 ENSMUST00000238914 Tcf7 protein_coding Interval_737 chr1 10289624 10289871 + 0 NA Intergenic Intergenic -90945 ENSMUSG00000102556.1 ENSMUSG00000102556 ENSMUST00000192111 Gm37569 TEC Interval_50113 chr14 8067474 8067672 + 0 NA Intergenic Intergenic -22505 ENSMUSG00000023156.4 ENSMUSG00000023156 ENSMUST00000180369 Rpp14 protein_coding Interval_38567 chr12 80161803 80162762 + 0 NA Intergenic Intergenic 29146 ENSMUSG00000112830.1 ENSMUSG00000112830 ENSMUST00000220316 Gm47765 processed_transcript Interval_165193 chr9 45145546 45146681 + 0 NA intron (ENSMUSG00000046480.6, intron 1 of 4) protein_coding-intron (ENSMUSG00000046480.6, intron 1 of 4) 7718 ENSMUSG00000046480.6 ENSMUSG00000046480 ENSMUST00000060125 Scn4b protein_coding Interval_123476 chr5 32772408 32772895 + 0 NA intron (ENSMUSG00000023452.19, intron 1 of 6) protein_coding-intron (ENSMUSG00000023452.19, intron 2 of 7) 28314 ENSMUSG00000105429.1 ENSMUSG00000105429 ENSMUST00000198236 Gm43692 TEC Interval_5912 chr1 93184295 93184519 + 0 NA intron (ENSMUSG00000084989.3, intron 4 of 31) protein_coding-intron (ENSMUSG00000084989.3, intron 4 of 31) 15682 ENSMUSG00000084989.3 ENSMUSG00000084989 ENSMUST00000138595 Crocc2 protein_coding Interval_117931 chr4 127157485 127158236 + 0 NA Intergenic Intergenic -16372 ENSMUSG00000082220.3 ENSMUSG00000082220 ENSMUST00000119616 Gm12943 processed_pseudogene Interval_103167 chr3 36181293 36181717 + 0 NA intron (ENSMUSG00000058400.13, intron 4 of 5) protein_coding-intron (ENSMUSG00000058400.13, intron 4 of 5) -21784 ENSMUSG00000104568.1 ENSMUSG00000104568 ENSMUST00000198885 Gm43255 antisense Interval_149455 chr7 98702489 98703843 + 0 NA promoter-TSS (ENSMUSG00000030753.15) protein_coding-promoter-TSS (ENSMUSG00000030753.15) -162 ENSMUSG00000030753.15 ENSMUSG00000030753 ENSMUST00000146473 Thap12 protein_coding Interval_151506 chr7 123141965 123142513 + 0 NA intron (ENSMUSG00000052707.8, intron 2 of 3) protein_coding-intron (ENSMUSG00000052707.8, intron 2 of 23) -29407 ENSMUSG00000052707.8 ENSMUSG00000052707 ENSMUST00000206126 Tnrc6a protein_coding Interval_48113 chr13 96276210 96276431 + 0 NA Intergenic Intergenic -80791 ENSMUSG00000076343.1 ENSMUSG00000076343 ENSMUST00000102388 Gm25213 miRNA Interval_99634 chr2 163741723 163744120 + 0 NA intron (ENSMUSG00000017697.3, intron 1 of 11) protein_coding-intron (ENSMUSG00000017697.3, intron 1 of 11) -12055 ENSMUSG00000017697.3 ENSMUSG00000017697 ENSMUST00000156939 Ada protein_coding Interval_24982 chr11 42454403 42454628 + 0 NA intron (ENSMUSG00000007653.12, intron 3 of 9) protein_coding-intron (ENSMUSG00000007653.12, intron 4 of 9) 33165 ENSMUSG00000007653.12 ENSMUSG00000007653 ENSMUST00000192403 Gabrb2 protein_coding Interval_67923 chr16 59567272 59568185 + 0 NA intron (ENSMUSG00000022723.16, intron 2 of 21) protein_coding-intron (ENSMUSG00000022723.16, intron 2 of 21) -37537 ENSMUSG00000022723.16 ENSMUSG00000022723 ENSMUST00000139989 Crybg3 protein_coding Interval_69955 chr17 3480641 3481956 + 0 NA promoter-TSS (ENSMUSG00000023800.15) protein_coding-promoter-TSS (ENSMUSG00000023800.15) -910 ENSMUSG00000023800.15 ENSMUSG00000023800 ENSMUST00000226434 Tiam2 protein_coding Interval_56737 chr14 121752784 121753320 + 0 NA intron (ENSMUSG00000025558.19, intron 1 of 52) protein_coding-intron (ENSMUSG00000025558.19, intron 1 of 52) -14191 ENSMUSG00000025558.19 ENSMUSG00000025558 ENSMUST00000238406 Dock9 protein_coding Interval_85630 chr19 29184164 29185706 + 0 NA Intergenic Intergenic 24817 ENSMUSG00000068466.6 ENSMUSG00000068466 ENSMUST00000084171 Gm5518 processed_pseudogene Interval_119053 chr4 135244097 135244695 + 0 NA intron (ENSMUSG00000037242.8, intron 1 of 2) protein_coding-intron (ENSMUSG00000037242.8, intron 1 of 5) 28418 ENSMUSG00000037242.8 ENSMUSG00000037242 ENSMUST00000143370 Clic4 protein_coding Interval_44543 chr13 45935523 45936102 + 0 NA promoter-TSS (ENSMUSG00000113987.1) antisense-promoter-TSS (ENSMUSG00000113987.1) -228 ENSMUSG00000113987.1 ENSMUSG00000113987 ENSMUST00000222376 4930453C13Rik antisense Interval_130546 chr5 128710373 128710884 + 0 NA intron (ENSMUSG00000029423.10, intron 2 of 13) protein_coding-intron (ENSMUSG00000029423.10, intron 2 of 13) 8104 ENSMUSG00000029423.10 ENSMUSG00000029423 ENSMUST00000195959 Piwil1 protein_coding Interval_16557 chr10 63635336 63635693 + 0 NA intron (ENSMUSG00000060843.11, intron 5 of 17) protein_coding-intron (ENSMUSG00000060843.11, intron 4 of 16) -185541 ENSMUSG00000060843.11 ENSMUSG00000060843 ENSMUST00000135474 Ctnna3 protein_coding Interval_1794 chr1 33813611 33815100 + 0 NA promoter-TSS (ENSMUSG00000042197.13) protein_coding-promoter-TSS (ENSMUSG00000042197.13) 71 ENSMUSG00000042197.13 ENSMUSG00000042197 ENSMUST00000125723 Zfp451 protein_coding Interval_75301 chr17 65771671 65772940 + 0 NA intron (ENSMUSG00000056515.9, intron 1 of 2) protein_coding-intron (ENSMUSG00000056515.9, intron 1 of 6) 335 ENSMUSG00000056515.9 ENSMUSG00000056515 ENSMUST00000233258 Rab31 protein_coding Interval_23224 chr11 20655527 20657141 + 0 NA Intergenic Intergenic -73086 ENSMUSG00000084252.1 ENSMUSG00000084252 ENSMUST00000120008 Gm12036 processed_pseudogene Interval_24610 chr11 35200158 35200841 + 0 NA intron (ENSMUSG00000056427.10, intron 2 of 2) protein_coding-intron (ENSMUSG00000056427.10, intron 3 of 35) -13902 ENSMUSG00000088125.1 ENSMUSG00000088125 ENSMUST00000157500 Gm26070 snoRNA Interval_167057 chr9 64940149 64940388 + 0 NA intron (ENSMUSG00000034452.7, intron 2 of 9) protein_coding-intron (ENSMUSG00000034452.7, intron 2 of 9) 11339 ENSMUSG00000034452.7 ENSMUSG00000034452 ENSMUST00000037798 Slc24a1 protein_coding Interval_154037 chr8 12121163 12121381 + 0 NA Intergenic Intergenic -157547 ENSMUSG00000074473.1 ENSMUSG00000074473 ENSMUST00000098935 A230072I06Rik protein_coding Interval_171479 chr9 118676357 118676868 + 0 NA intron (ENSMUSG00000039115.13, intron 11 of 27) protein_coding-intron (ENSMUSG00000039115.13, intron 11 of 27) -86417 ENSMUSG00000110676.1 ENSMUSG00000110676 ENSMUST00000212679 Gm45897 lincRNA Interval_75140 chr17 63881542 63881930 + 0 NA intron (ENSMUSG00000000127.15, intron 1 of 17) protein_coding-intron (ENSMUSG00000000127.15, intron 1 of 14) -17945 ENSMUSG00000045506.3 ENSMUSG00000045506 ENSMUST00000050753 A930002H24Rik protein_coding Interval_29671 chr11 85935474 85935695 + 0 NA Intergenic Intergenic -14911 ENSMUSG00000081632.1 ENSMUSG00000081632 ENSMUST00000118790 Gm11443 processed_pseudogene Interval_99820 chr2 165133431 165134053 + 0 NA intron (ENSMUSG00000053166.14, intron 7 of 10) protein_coding-intron (ENSMUSG00000053166.14, intron 8 of 11) -25670 ENSMUSG00000086630.1 ENSMUSG00000086630 ENSMUST00000124728 Gm14397 antisense Interval_114850 chr4 86293688 86293908 + 0 NA intron (ENSMUSG00000066113.16, intron 15 of 28) protein_coding-intron (ENSMUSG00000066113.16, intron 2 of 15) 148543 ENSMUSG00000083272.1 ENSMUSG00000083272 ENSMUST00000118478 Gm12550 processed_pseudogene Interval_97385 chr2 135672261 135672881 + 0 NA intron (ENSMUSG00000039943.16, intron 1 of 2) protein_coding-intron (ENSMUSG00000039943.16, intron 1 of 28) 3118 ENSMUSG00000085908.1 ENSMUSG00000085908 ENSMUST00000154946 Gm14209 sense_intronic Interval_105223 chr3 83974767 83975123 + 0 NA intron (ENSMUSG00000033767.14, intron 3 of 33) protein_coding-intron (ENSMUSG00000033767.14, intron 3 of 33) -67366 ENSMUSG00000033767.14 ENSMUSG00000033767 ENSMUST00000192811 Tmem131l protein_coding Interval_20630 chr10 119760066 119760755 + 0 NA intron (ENSMUSG00000084764.1, intron 1 of 2) protein_coding-intron (ENSMUSG00000034813.18, intron 1 of 22) 1289 ENSMUSG00000084764.1 ENSMUSG00000084764 ENSMUST00000153898 Grip1os2 antisense Interval_91560 chr2 43359156 43359419 + 0 NA Intergenic Intergenic 160111 ENSMUSG00000080994.2 ENSMUSG00000080994 ENSMUST00000119418 Gm13464 processed_pseudogene Interval_56606 chr14 120817255 120817668 + 0 NA Intergenic Intergenic -1721 ENSMUSG00000115163.1 ENSMUSG00000115163 ENSMUST00000228954 Gm18076 processed_pseudogene Interval_44049 chr13 40517757 40518631 + 0 NA Intergenic Intergenic -15376 ENSMUSG00000114215.1 ENSMUSG00000114215 ENSMUST00000223887 Gm47038 processed_pseudogene Interval_123507 chr5 33039118 33039849 + 0 NA Intergenic Intergenic -10502 ENSMUSG00000107046.1 ENSMUSG00000107046 ENSMUST00000201086 Gm43849 processed_pseudogene Interval_34812 chr12 11548269 11549022 + 0 NA Intergenic Intergenic -36255 ENSMUSG00000113226.1 ENSMUSG00000113226 ENSMUST00000221353 Gm47808 processed_transcript Interval_144883 chr7 28741305 28742352 + 0 NA promoter-TSS (ENSMUSG00000045948.8) protein_coding-promoter-TSS (ENSMUSG00000045948.8) -58 ENSMUSG00000045948.8 ENSMUSG00000045948 ENSMUST00000165004 Mrps12 protein_coding Interval_73416 chr17 37078362 37080564 + 0 NA Intergenic Intergenic 9022 ENSMUSG00000056600.4 ENSMUSG00000056600 ENSMUST00000207101 Olfr90 protein_coding Interval_110081 chr3 153121479 153122147 + 0 NA Intergenic Intergenic 61002 ENSMUSG00000105337.4 ENSMUSG00000105337 ENSMUST00000197695 1700094M23Rik lincRNA Interval_97120 chr2 131429094 131429464 + 0 NA Intergenic Intergenic -14034 ENSMUSG00000081652.1 ENSMUSG00000081652 ENSMUST00000119763 Gm14283 processed_pseudogene Interval_54261 chr14 66958631 66959450 + 0 NA Intergenic Intergenic -8142 ENSMUSG00000114558.1 ENSMUSG00000114558 ENSMUST00000224795 Gm9570 processed_pseudogene Interval_80878 chr18 49832312 49833624 + 0 NA promoter-TSS (ENSMUSG00000037416.13) protein_coding-promoter-TSS (ENSMUSG00000037416.13) -15010 ENSMUSG00000100134.1 ENSMUSG00000100134 ENSMUST00000186872 1700065O20Rik lincRNA Interval_96401 chr2 122219687 122220993 + 0 NA TTS (ENSMUSG00000070692.6) processed_pseudogene-TTS (ENSMUSG00000070692.6) 347 ENSMUSG00000070692.6 ENSMUSG00000070692 ENSMUST00000117447 Rps12-ps10 processed_pseudogene Interval_40959 chr12 110255029 110255199 + 0 NA Intergenic Intergenic 18622 ENSMUSG00000113605.1 ENSMUSG00000113605 ENSMUST00000222054 4930425K24Rik TEC Interval_112336 chr4 40643070 40644122 + 0 NA Intergenic Intergenic -34736 ENSMUSG00000081720.1 ENSMUSG00000081720 ENSMUST00000117626 Gm12391 processed_pseudogene Interval_143769 chr7 16205004 16205749 + 0 NA TTS (ENSMUSG00000006019.15) protein_coding-TTS (ENSMUSG00000006019.15) 16656 ENSMUSG00000006019.15 ENSMUSG00000006019 ENSMUST00000133518 Dhx34 protein_coding Interval_90102 chr2 28067978 28068748 + 0 NA Intergenic Intergenic 16522 ENSMUSG00000026835.15 ENSMUSG00000026835 ENSMUST00000135472 Fcnb protein_coding Interval_74323 chr17 48959325 48960831 + 0 NA intron (ENSMUSG00000040490.4, intron 1 of 2) protein_coding-intron (ENSMUSG00000040490.4, intron 1 of 2) 27699 ENSMUSG00000040490.4 ENSMUSG00000040490 ENSMUST00000046254 Lrfn2 protein_coding Interval_40503 chr12 105316831 105317455 + 0 NA Intergenic Intergenic -16727 ENSMUSG00000097929.9 ENSMUSG00000097929 ENSMUST00000180503 Tunar protein_coding Interval_78263 chr18 10961228 10961520 + 0 NA Intergenic Intergenic 32490 ENSMUSG00000117563.1 ENSMUSG00000117563 ENSMUST00000235119 Gm7575 processed_pseudogene Interval_97525 chr2 138540874 138541134 + 0 NA intron (ENSMUSG00000062098.11, intron 5 of 5) protein_coding-intron (ENSMUSG00000062098.11, intron 5 of 5) -48388 ENSMUSG00000085911.1 ENSMUSG00000085911 ENSMUST00000155923 Gm14061 lincRNA Interval_68386 chr16 75364726 75365792 + 0 NA Intergenic Intergenic 34015 ENSMUSG00000116867.1 ENSMUSG00000116867 ENSMUST00000232003 Gm49677 TEC Interval_74239 chr17 47646515 47647295 + 0 NA intron (ENSMUSG00000090115.7, intron 1 of 6) protein_coding-intron (ENSMUSG00000090115.7, intron 1 of 6) -24566 ENSMUSG00000083672.1 ENSMUSG00000083672 ENSMUST00000120025 Kpna2-ps processed_pseudogene Interval_120371 chr4 148166477 148167286 + 0 NA TTS (ENSMUSG00000041556.8) protein_coding-TTS (ENSMUSG00000041556.8) 6260 ENSMUSG00000041556.8 ENSMUSG00000041556 ENSMUST00000047951 Fbxo2 protein_coding Interval_43555 chr13 33109270 33109706 + 0 NA intron (ENSMUSG00000083653.2, intron 1 of 1) unprocessed_pseudogene-intron (ENSMUSG00000083653.2, intron 1 of 1) 11834 ENSMUSG00000082893.1 ENSMUSG00000082893 ENSMUST00000121346 Gm11383 processed_pseudogene Interval_149400 chr7 98144655 98145626 + 0 NA TTS (ENSMUSG00000035547.14) protein_coding-TTS (ENSMUSG00000035547.14) 362 ENSMUSG00000074006.3 ENSMUSG00000074006 ENSMUST00000098281 Omp protein_coding Interval_72464 chr17 29979191 29980109 + 0 NA intron (ENSMUSG00000117528.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000117528.1, intron 1 of 1) 330 ENSMUSG00000117528.1 ENSMUSG00000117528 ENSMUST00000234695 Gm50017 lincRNA Interval_11299 chr1 180813006 180814502 + 0 NA promoter-TSS (ENSMUSG00000060743.12) protein_coding-promoter-TSS (ENSMUSG00000060743.12) -22 ENSMUSG00000073485.3 ENSMUSG00000073485 ENSMUST00000097448 H3f3aos antisense Interval_139140 chr6 95903761 95904892 + 0 NA Intergenic Intergenic 22603 ENSMUSG00000107856.1 ENSMUSG00000107856 ENSMUST00000203221 Gm7838 processed_pseudogene Interval_117724 chr4 125835395 125835696 + 0 NA Intergenic Intergenic 86872 ENSMUSG00000085562.7 ENSMUSG00000085562 ENSMUST00000144539 2610028E06Rik lincRNA Interval_132783 chr5 147843107 147844120 + 0 NA Intergenic Intergenic 21368 ENSMUSG00000107065.1 ENSMUSG00000107065 ENSMUST00000202661 Gm43155 processed_pseudogene Interval_42874 chr13 20900619 20900825 + 0 NA intron (ENSMUSG00000021322.8, intron 5 of 20) protein_coding-intron (ENSMUSG00000021322.8, intron 5 of 20) 55968 ENSMUSG00000088989.1 ENSMUSG00000088989 ENSMUST00000158364 Gm25605 snRNA Interval_95108 chr2 103969295 103971175 + 0 NA promoter-TSS (ENSMUSG00000032698.15) protein_coding-promoter-TSS (ENSMUSG00000032698.15) 12240 ENSMUSG00000032698.15 ENSMUSG00000032698 ENSMUST00000133210 Lmo2 protein_coding Interval_157135 chr8 66190724 66190952 + 0 NA intron (ENSMUSG00000036469.16, intron 1 of 5) protein_coding-intron (ENSMUSG00000036469.16, intron 1 of 5) 69096 ENSMUSG00000036469.16 ENSMUSG00000036469 ENSMUST00000110253 Marchf1 protein_coding Interval_165335 chr9 46377025 46377389 + 0 NA intron (ENSMUSG00000110864.1, intron 4 of 4) lincRNA-intron (ENSMUSG00000110864.1, intron 4 of 4) -20155 ENSMUSG00000110802.1 ENSMUSG00000110802 ENSMUST00000213920 Gm47141 lincRNA Interval_129803 chr5 122439458 122440634 + 0 NA promoter-TSS (ENSMUSG00000029466.11) protein_coding-promoter-TSS (ENSMUSG00000029466.11) -93 ENSMUSG00000029466.11 ENSMUSG00000029466 ENSMUST00000154074 Anapc7 protein_coding Interval_134665 chr6 30209958 30211199 + 0 NA TTS (ENSMUSG00000039159.16) protein_coding-TTS (ENSMUSG00000039159.16) 37685 ENSMUSG00000103108.2 ENSMUSG00000103108 ENSMUST00000194541 Rncr4 lincRNA Interval_117945 chr4 127235678 127237740 + 0 NA TTS (ENSMUSG00000042388.14) protein_coding-TTS (ENSMUSG00000042388.14) -7075 ENSMUSG00000042380.8 ENSMUSG00000042380 ENSMUST00000142029 Smim12 protein_coding Interval_24456 chr11 33405850 33406153 + 0 NA intron (ENSMUSG00000040594.19, intron 14 of 20) protein_coding-intron (ENSMUSG00000040594.19, intron 14 of 27) -10735 ENSMUSG00000069913.3 ENSMUSG00000069913 ENSMUST00000118265 Anp32-ps processed_pseudogene Interval_25894 chr11 52374056 52374767 + 0 NA intron (ENSMUSG00000020402.11, intron 1 of 3) protein_coding-intron (ENSMUSG00000020402.11, intron 1 of 7) 311 ENSMUSG00000020402.11 ENSMUSG00000020402 ENSMUST00000153339 Vdac1 protein_coding Interval_44477 chr13 45209384 45209971 + 0 NA Intergenic Intergenic -22141 ENSMUSG00000098136.1 ENSMUSG00000098136 ENSMUST00000182830 Gm8513 processed_pseudogene Interval_144122 chr7 19522998 19524950 + 0 NA exon (ENSMUSG00000060621.6, exon 4 of 4) protein_coding-exon (ENSMUSG00000060621.6, exon 4 of 4) 5243 ENSMUSG00000060621.6 ENSMUSG00000060621 ENSMUST00000214205 Nkpd1 protein_coding Interval_48018 chr13 95287093 95287699 + 0 NA Intergenic Intergenic -39371 ENSMUSG00000041995.8 ENSMUSG00000041995 ENSMUST00000222456 Zbed3 protein_coding Interval_143075 chr6 149095366 149095579 + 0 NA intron (ENSMUSG00000030313.15, intron 1 of 3) protein_coding-intron (ENSMUSG00000030313.15, intron 1 of 20) -21366 ENSMUSG00000065198.1 ENSMUSG00000065198 ENSMUST00000083264 Gm23462 snRNA Interval_43064 chr13 23561675 23563703 + 0 NA promoter-TSS (ENSMUSG00000069273.2) protein_coding-promoter-TSS (ENSMUSG00000069273.2) -320 ENSMUSG00000069273.2 ENSMUSG00000069273 ENSMUST00000105107 H3c6 protein_coding Interval_99316 chr2 158889089 158889803 + 0 NA Intergenic Intergenic 62028 ENSMUSG00000027655.14 ENSMUSG00000027655 ENSMUST00000143195 Dhx35 protein_coding Interval_33557 chr11 117199047 117200296 + 0 NA promoter-TSS (ENSMUSG00000059248.13) protein_coding-promoter-TSS (ENSMUSG00000059248.13) 44602 ENSMUSG00000020823.16 ENSMUSG00000020823 ENSMUST00000153437 Sec14l1 protein_coding Interval_114957 chr4 87669234 87670288 + 0 NA Intergenic Intergenic 88972 ENSMUSG00000082443.1 ENSMUSG00000082443 ENSMUST00000118382 Gm12604 processed_pseudogene Interval_134197 chr6 22632424 22633127 + 0 NA Intergenic Intergenic 9857 ENSMUSG00000107282.1 ENSMUSG00000107282 ENSMUST00000201550 Gm43630 processed_pseudogene Interval_4366 chr1 73127584 73128270 + 0 NA Intergenic Intergenic 81496 ENSMUSG00000102266.1 ENSMUSG00000102266 ENSMUST00000194107 Gm38106 TEC Interval_36354 chr12 41831288 41831519 + 0 NA intron (ENSMUSG00000056899.10, intron 5 of 5) protein_coding-intron (ENSMUSG00000056899.10, intron 6 of 6) -2880 ENSMUSG00000113105.1 ENSMUSG00000113105 ENSMUST00000221020 Gm47371 antisense Interval_28630 chr11 77446432 77447545 + 0 NA intron (ENSMUSG00000037926.15, intron 12 of 13) protein_coding-intron (ENSMUSG00000037926.15, intron 13 of 14) -15657 ENSMUSG00000020836.15 ENSMUSG00000020836 ENSMUST00000079770 Coro6 protein_coding Interval_39144 chr12 85426098 85426635 + 0 NA Intergenic Intergenic 9883 ENSMUSG00000113940.1 ENSMUSG00000113940 ENSMUST00000220805 Gm40477 lincRNA Interval_6791 chr1 119492191 119492629 + 0 NA intron (ENSMUSG00000004451.14, intron 1 of 1) protein_coding-intron (ENSMUSG00000004451.14, intron 1 of 4) -7067 ENSMUSG00000101437.1 ENSMUSG00000101437 ENSMUST00000190805 Gm29454 processed_pseudogene Interval_76015 chr17 74380273 74380652 + 0 NA intron (ENSMUSG00000024068.8, intron 13 of 15) protein_coding-intron (ENSMUSG00000024068.8, intron 14 of 16) -15183 ENSMUSG00000024069.14 ENSMUSG00000024069 ENSMUST00000233180 Slc30a6 protein_coding Interval_54167 chr14 65870632 65871933 + 0 NA Intergenic Intergenic 33922 ENSMUSG00000022035.6 ENSMUSG00000022035 ENSMUST00000226027 Ccdc25 protein_coding Interval_99200 chr2 157974599 157975890 + 0 NA Intergenic Intergenic 31968 ENSMUSG00000027650.12 ENSMUSG00000027650 ENSMUST00000124338 Tti1 protein_coding Interval_136340 chr6 53434871 53435378 + 0 NA TTS (ENSMUSG00000096147.1) snRNA-TTS (ENSMUSG00000096147.1) 1150 ENSMUSG00000096147.1 ENSMUSG00000096147 ENSMUST00000083282 Gm25818 snRNA Interval_80072 chr18 37300718 37301265 + 0 NA exon (ENSMUSG00000045498.1, exon 1 of 1) protein_coding-exon (ENSMUSG00000045498.1, exon 1 of 1) 192 ENSMUSG00000045498.1 ENSMUSG00000045498 ENSMUST00000051754 Pcdhb3 protein_coding Interval_112681 chr4 44037166 44037657 + 0 NA intron (ENSMUSG00000028479.18, intron 8 of 8) protein_coding-intron (ENSMUSG00000028479.18, intron 11 of 11) 17886 ENSMUSG00000028479.18 ENSMUSG00000028479 ENSMUST00000140724 Gne protein_coding Interval_149190 chr7 96152583 96153530 + 0 NA Intergenic Intergenic 50480 ENSMUSG00000108528.1 ENSMUSG00000108528 ENSMUST00000205708 Gm8319 processed_pseudogene Interval_98408 chr2 152141924 152144411 + 0 NA promoter-TSS (ENSMUSG00000068079.5) protein_coding-promoter-TSS (ENSMUSG00000068079.5) -394 ENSMUSG00000068079.5 ENSMUSG00000068079 ENSMUST00000089112 Tcf15 protein_coding Interval_81735 chr18 64188151 64190052 + 0 NA intron (ENSMUSG00000086128.8, intron 1 of 3) antisense-intron (ENSMUSG00000086128.8, intron 2 of 5) 11426 ENSMUSG00000118191.1 ENSMUSG00000118191 ENSMUST00000235473 Gm45934 transcribed_processed_pseudogene Interval_66058 chr16 31314070 31314656 + 0 NA intron (ENSMUSG00000022548.14, intron 1 of 4) protein_coding-intron (ENSMUSG00000022548.14, intron 1 of 4) -10872 ENSMUSG00000116973.1 ENSMUSG00000116973 ENSMUST00000231745 AV205837 lincRNA Interval_122314 chr5 21215237 21215982 + 0 NA intron (ENSMUSG00000039934.12, intron 5 of 26) protein_coding-intron (ENSMUSG00000039934.12, intron 5 of 30) 1600 ENSMUSG00000104920.1 ENSMUSG00000104920 ENSMUST00000199108 Gm43215 processed_pseudogene Interval_100714 chr2 171947608 171947843 + 0 NA Intergenic Intergenic 14406 ENSMUSG00000086823.7 ENSMUSG00000086823 ENSMUST00000125465 1700028P15Rik processed_transcript Interval_13675 chr10 20940646 20941051 + 0 NA Intergenic Intergenic -61875 ENSMUSG00000111177.1 ENSMUSG00000111177 ENSMUST00000213102 Rps2-ps3 processed_pseudogene Interval_147980 chr7 76186502 76186703 + 0 NA Intergenic Intergenic -43285 ENSMUSG00000025754.11 ENSMUSG00000025754 ENSMUST00000107442 Agbl1 protein_coding Interval_81418 chr18 60648840 60649494 + 0 NA promoter-TSS (ENSMUSG00000043079.17) protein_coding-promoter-TSS (ENSMUSG00000043079.17) -24905 ENSMUSG00000043079.17 ENSMUSG00000043079 ENSMUST00000139236 Synpo protein_coding Interval_40712 chr12 107856464 107857182 + 0 NA Intergenic Intergenic -72782 ENSMUSG00000086975.1 ENSMUSG00000086975 ENSMUST00000134448 Gm15208 lincRNA Interval_78749 chr18 20220922 20221806 + 0 NA Intergenic Intergenic -25976 ENSMUSG00000034774.6 ENSMUSG00000034774 ENSMUST00000054128 Dsg1c protein_coding Interval_31135 chr11 98355760 98356114 + 0 NA intron (ENSMUSG00000061718.12, intron 2 of 3) protein_coding-intron (ENSMUSG00000061718.12, intron 5 of 6) 1341 ENSMUSG00000061718.12 ENSMUSG00000061718 ENSMUST00000152525 Ppp1r1b protein_coding Interval_48816 chr13 103644401 103644601 + 0 NA intron (ENSMUSG00000114206.1, intron 1 of 3) lincRNA-intron (ENSMUSG00000114206.1, intron 1 of 3) 2575 ENSMUSG00000096642.1 ENSMUSG00000096642 ENSMUST00000179897 Gm24870 snRNA Interval_51803 chr14 32311383 32312347 + 0 NA intron (ENSMUSG00000115691.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000115691.1, intron 1 of 1) 6120 ENSMUSG00000115691.1 ENSMUSG00000115691 ENSMUST00000226980 Gm48914 lincRNA Interval_82116 chr18 67818014 67818205 + 0 NA intron (ENSMUSG00000024542.9, intron 10 of 15) protein_coding-intron (ENSMUSG00000024542.9, intron 10 of 45) -18166 ENSMUSG00000118134.1 ENSMUSG00000118134 ENSMUST00000237968 4930549G23Rik antisense Interval_68939 chr16 89510996 89511798 + 0 NA Intergenic Intergenic -3074 ENSMUSG00000056706.3 ENSMUSG00000056706 ENSMUST00000056118 Krtap7-1 protein_coding Interval_82864 chr18 77583292 77584339 + 0 NA Intergenic Intergenic 70375 ENSMUSG00000117855.1 ENSMUSG00000117855 ENSMUST00000236419 Gm50197 processed_pseudogene Interval_7939 chr1 134664601 134665206 + 0 NA intron (ENSMUSG00000026452.15, intron 2 of 9) protein_coding-intron (ENSMUSG00000026452.15, intron 1 of 2) 18222 ENSMUSG00000026452.15 ENSMUSG00000026452 ENSMUST00000187702 Syt2 protein_coding Interval_69424 chr16 93218530 93218874 + 0 NA Intergenic Intergenic 145947 ENSMUSG00000098983.1 ENSMUSG00000098983 ENSMUST00000184529 Gm28003 miRNA Interval_120854 chr4 151072920 151073633 + 0 NA intron (ENSMUSG00000014592.21, intron 22 of 24) protein_coding-intron (ENSMUSG00000014592.21, intron 22 of 23) -15330 ENSMUSG00000028955.3 ENSMUSG00000028955 ENSMUST00000125205 Vamp3 protein_coding Interval_8328 chr1 137375222 137375476 + 0 NA Intergenic Intergenic -8102 ENSMUSG00000088164.1 ENSMUSG00000088164 ENSMUST00000157539 Gm23534 snoRNA Interval_54546 chr14 70604707 70606133 + 0 NA TTS (ENSMUSG00000022099.17) protein_coding-TTS (ENSMUSG00000022099.17) -5585 ENSMUSG00000022095.9 ENSMUSG00000022095 ENSMUST00000022690 Fam160b2 protein_coding Interval_83479 chr18 86557542 86558305 + 0 NA Intergenic Intergenic -44048 ENSMUSG00000117736.1 ENSMUSG00000117736 ENSMUST00000236204 Gm50386 lincRNA Interval_147362 chr7 66144772 66145917 + 0 NA intron (ENSMUSG00000032640.10, intron 2 of 2) protein_coding-intron (ENSMUSG00000032640.10, intron 2 of 2) -17645 ENSMUSG00000108699.1 ENSMUSG00000108699 ENSMUST00000205601 Gm18988 processed_pseudogene Interval_114667 chr4 83596346 83597996 + 0 NA promoter-TSS (ENSMUSG00000098217.1) processed_pseudogene-promoter-TSS (ENSMUSG00000098217.1) -132 ENSMUSG00000098217.1 ENSMUSG00000098217 ENSMUST00000182160 Gm27046 processed_pseudogene Interval_41397 chr12 113316784 113316958 + 0 NA intron (ENSMUSG00000102962.1, intron 1 of 2) IG_C_pseudogene-intron (ENSMUSG00000102962.1, intron 1 of 2) 1159 ENSMUSG00000102962.1 ENSMUSG00000102962 ENSMUST00000194233 Gm37944 IG_C_pseudogene Interval_24608 chr11 35178261 35178855 + 0 NA intron (ENSMUSG00000056427.10, intron 2 of 2) protein_coding-intron (ENSMUSG00000056427.10, intron 3 of 35) 6929 ENSMUSG00000056427.10 ENSMUSG00000056427 ENSMUST00000124438 Slit3 protein_coding Interval_109487 chr3 142869326 142869537 + 0 NA intron (ENSMUSG00000004591.16, intron 1 of 21) protein_coding-intron (ENSMUSG00000004591.16, intron 1 of 21) -12157 ENSMUSG00000106550.1 ENSMUSG00000106550 ENSMUST00000199962 Gm43646 processed_transcript Interval_5096 chr1 84902816 84903048 + 0 NA Intergenic Intergenic 31925 ENSMUSG00000026220.6 ENSMUSG00000026220 ENSMUST00000186980 Slc16a14 protein_coding Interval_138463 chr6 88430912 88431571 + 0 NA intron (ENSMUSG00000033216.9, intron 1 of 5) protein_coding-intron (ENSMUSG00000033216.9, intron 1 of 6) -14446 ENSMUSG00000107561.1 ENSMUSG00000107561 ENSMUST00000203049 Gm44264 antisense Interval_44082 chr13 40759486 40759694 + 0 NA Intergenic Intergenic -4596 ENSMUSG00000114640.1 ENSMUSG00000114640 ENSMUST00000224849 Gm48107 lincRNA Interval_119344 chr4 137015460 137016455 + 0 NA exon (ENSMUSG00000060862.10, exon 2 of 2) protein_coding-exon (ENSMUSG00000060862.10, exon 2 of 2) -9727 ENSMUSG00000077624.1 ENSMUSG00000077624 ENSMUST00000104436 Gm23834 snoRNA Interval_105990 chr3 90483805 90484065 + 0 NA exon (ENSMUSG00000001016.12, exon 7 of 7) protein_coding-exon (ENSMUSG00000001016.12, exon 7 of 7) 7058 ENSMUSG00000001018.15 ENSMUSG00000001018 ENSMUST00000107351 Snapin protein_coding Interval_70742 chr17 14103106 14103480 + 0 NA Intergenic Intergenic 3157 ENSMUSG00000099476.1 ENSMUSG00000099476 ENSMUST00000188802 4930488N24Rik unprocessed_pseudogene Interval_59022 chr15 41788414 41789836 + 0 NA promoter-TSS (ENSMUSG00000022307.16) protein_coding-promoter-TSS (ENSMUSG00000022307.16) -214 ENSMUSG00000097232.1 ENSMUSG00000097232 ENSMUST00000180418 Gm26854 antisense Interval_9106 chr1 153636245 153637622 + 0 NA Intergenic Intergenic -16260 ENSMUSG00000099858.1 ENSMUSG00000099858 ENSMUST00000186414 Gm6652 processed_pseudogene Interval_74519 chr17 52719423 52719739 + 0 NA intron (ENSMUSG00000035580.10, intron 1 of 15) protein_coding-intron (ENSMUSG00000035580.10, intron 1 of 15) -116921 ENSMUSG00000098552.1 ENSMUSG00000098552 ENSMUST00000183438 Gm27217 antisense Interval_126367 chr5 87340205 87340537 + 0 NA Intergenic Intergenic -3176 ENSMUSG00000035780.2 ENSMUSG00000035780 ENSMUST00000031195 Ugt2a3 protein_coding Interval_151135 chr7 118756841 118757273 + 0 NA intron (ENSMUSG00000030982.19, intron 7 of 8) protein_coding-intron (ENSMUSG00000030982.19, intron 7 of 30) -10960 ENSMUSG00000109303.1 ENSMUSG00000109303 ENSMUST00000208351 Gm44549 sense_intronic Interval_138714 chr6 91364313 91364547 + 0 NA exon (ENSMUSG00000030093.7, exon 4 of 4) protein_coding-exon (ENSMUSG00000030093.7, exon 4 of 4) 667 ENSMUSG00000030093.7 ENSMUSG00000030093 ENSMUST00000132936 Wnt7a protein_coding Interval_118373 chr4 130957653 130957859 + 0 NA Intergenic Intergenic 13371 ENSMUSG00000040533.7 ENSMUSG00000040533 ENSMUST00000102576 Matn1 protein_coding Interval_13099 chr10 11329598 11329860 + 0 NA TTS (ENSMUSG00000087802.1) snoRNA-TTS (ENSMUSG00000087802.1) 686 ENSMUSG00000111983.1 ENSMUSG00000111983 ENSMUST00000219929 Gm48666 processed_pseudogene Interval_106512 chr3 96799772 96800404 + 0 NA TTS (ENSMUSG00000038304.14) protein_coding-TTS (ENSMUSG00000038304.14) 15763 ENSMUSG00000105976.1 ENSMUSG00000105976 ENSMUST00000197286 Gm42782 TEC Interval_164315 chr9 35266458 35268767 + 0 NA promoter-TSS (ENSMUSG00000032044.4) protein_coding-promoter-TSS (ENSMUSG00000032044.4) 143 ENSMUSG00000050471.17 ENSMUSG00000050471 ENSMUST00000125124 Fam118b protein_coding Interval_136675 chr6 57514506 57514705 + 0 NA intron (ENSMUSG00000037826.5, intron 2 of 2) protein_coding-intron (ENSMUSG00000037826.5, intron 5 of 6) 1002 ENSMUSG00000037826.5 ENSMUSG00000037826 ENSMUST00000203713 Ppm1k protein_coding Interval_167552 chr9 70416012 70416734 + 0 NA intron (ENSMUSG00000032218.7, intron 3 of 8) protein_coding-intron (ENSMUSG00000032218.7, intron 3 of 8) 5174 ENSMUSG00000032218.7 ENSMUSG00000032218 ENSMUST00000034742 Ccnb2 protein_coding Interval_135106 chr6 35379726 35381917 + 0 NA Intergenic Intergenic 49975 ENSMUSG00000107341.1 ENSMUSG00000107341 ENSMUST00000201560 1700065J11Rik lincRNA Interval_90117 chr2 28241734 28242377 + 0 NA Intergenic Intergenic 49063 ENSMUSG00000026833.18 ENSMUSG00000026833 ENSMUST00000028177 Olfm1 protein_coding Interval_32725 chr11 110069397 110069844 + 0 NA TTS (ENSMUSG00000041828.15) protein_coding-TTS (ENSMUSG00000041828.15) -4247 ENSMUSG00000041828.15 ENSMUSG00000041828 ENSMUST00000106662 Abca8a protein_coding Interval_7714 chr1 133236640 133237710 + 0 NA intron (ENSMUSG00000041757.17, intron 1 of 22) protein_coding-intron (ENSMUSG00000041757.17, intron 1 of 22) -19367 ENSMUSG00000041757.17 ENSMUSG00000041757 ENSMUST00000190208 Plekha6 protein_coding Interval_117096 chr4 119497671 119499105 + 0 NA Intergenic Intergenic 4158 ENSMUSG00000082009.1 ENSMUSG00000082009 ENSMUST00000118610 Gm12954 processed_pseudogene Interval_53777 chr14 61684506 61684801 + 0 NA exon (ENSMUSG00000104187.1, exon 1 of 1) TEC-exon (ENSMUSG00000104187.1, exon 1 of 1) 1143 ENSMUSG00000104187.1 ENSMUSG00000104187 ENSMUST00000194021 Gm37820 TEC Interval_7606 chr1 132487329 132487682 + 0 NA intron (ENSMUSG00000026439.14, intron 4 of 14) protein_coding-intron (ENSMUSG00000026439.14, intron 4 of 14) 10138 ENSMUSG00000026439.14 ENSMUSG00000026439 ENSMUST00000187834 Rbbp5 protein_coding Interval_7500 chr1 131857936 131859560 + 0 NA Intergenic Intergenic -8905 ENSMUSG00000026433.13 ENSMUSG00000026433 ENSMUST00000187084 Rab29 protein_coding Interval_64265 chr16 10026714 10027205 + 0 NA Intergenic Intergenic -18006 ENSMUSG00000098100.1 ENSMUSG00000098100 ENSMUST00000182616 Gm7572 processed_pseudogene Interval_17974 chr10 81161656 81162700 + 0 NA TTS (ENSMUSG00000004934.14) protein_coding-TTS (ENSMUSG00000004934.14) -4167 ENSMUSG00000004934.14 ENSMUSG00000004934 ENSMUST00000129549 Pias4 protein_coding Interval_122225 chr5 20370112 20370985 + 0 NA intron (ENSMUSG00000040003.18, intron 3 of 15) protein_coding-intron (ENSMUSG00000040003.18, intron 7 of 22) 106207 ENSMUSG00000087768.1 ENSMUSG00000087768 ENSMUST00000157143 Gm22755 snRNA Interval_174724 chrX 164075842 164076748 + 0 NA promoter-TSS (ENSMUSG00000040749.11) protein_coding-promoter-TSS (ENSMUSG00000040749.11) 198 ENSMUSG00000040749.11 ENSMUSG00000040749 ENSMUST00000134272 Siah1b protein_coding Interval_106143 chr3 93636898 93637578 + 0 NA promoter-TSS (ENSMUSG00000104470.1) TEC-promoter-TSS (ENSMUSG00000104470.1) -806 ENSMUSG00000104470.1 ENSMUSG00000104470 ENSMUST00000193009 Gm38207 TEC Interval_31261 chr11 99188526 99189834 + 0 NA Intergenic Intergenic 24263 ENSMUSG00000037935.16 ENSMUSG00000037935 ENSMUST00000128215 Smarce1 protein_coding Interval_171897 chr9 122198431 122199940 + 0 NA intron (ENSMUSG00000037949.8, intron 12 of 12) protein_coding-intron (ENSMUSG00000037949.8, intron 12 of 12) 56736 ENSMUSG00000111434.1 ENSMUSG00000111434 ENSMUST00000213905 Gm47121 sense_intronic Interval_158830 chr8 86921656 86921893 + 0 NA promoter-TSS (ENSMUSG00000099162.1) lincRNA-promoter-TSS (ENSMUSG00000099162.1) -627 ENSMUSG00000099162.1 ENSMUSG00000099162 ENSMUST00000183394 Gm27168 lincRNA Interval_94376 chr2 90611929 90613171 + 0 NA Intergenic Intergenic -31903 ENSMUSG00000025314.16 ENSMUSG00000025314 ENSMUST00000168621 Ptprj protein_coding Interval_19580 chr10 103726636 103727023 + 0 NA Intergenic Intergenic 131503 ENSMUSG00000112554.1 ENSMUSG00000112554 ENSMUST00000218181 Gm47224 lincRNA Interval_137749 chr6 82056732 82057014 + 0 NA intron (ENSMUSG00000035104.14, intron 1 of 2) protein_coding-intron (ENSMUSG00000035104.14, intron 1 of 2) -4292 ENSMUSG00000087136.1 ENSMUSG00000087136 ENSMUST00000145950 Gm15864 antisense Interval_142428 chr6 142103305 142103608 + 0 NA intron (ENSMUSG00000079262.3, intron 8 of 14) protein_coding-intron (ENSMUSG00000079262.3, intron 8 of 14) -7000 ENSMUSG00000092488.1 ENSMUSG00000092488 ENSMUST00000174516 Gm18159 processed_pseudogene Interval_29785 chr11 86779090 86780650 + 0 NA intron (ENSMUSG00000018425.18, intron 7 of 8) protein_coding-intron (ENSMUSG00000018425.18, intron 12 of 17) 21218 ENSMUSG00000018425.18 ENSMUSG00000018425 ENSMUST00000131798 Dhx40 protein_coding Interval_31743 chr11 102577057 102577578 + 0 NA intron (ENSMUSG00000078640.9, intron 2 of 3) protein_coding-intron (ENSMUSG00000078640.9, intron 2 of 2) 1958 ENSMUSG00000078640.9 ENSMUSG00000078640 ENSMUST00000107080 Gm11627 protein_coding Interval_11874 chr1 186622430 186623530 + 0 NA exon (ENSMUSG00000039239.14, exon 7 of 7) protein_coding-exon (ENSMUSG00000039239.14, exon 7 of 7) -53762 ENSMUSG00000089045.1 ENSMUSG00000089045 ENSMUST00000158420 Gm26169 snoRNA Interval_12851 chr10 6562652 6562867 + 0 NA Intergenic Intergenic -35885 ENSMUSG00000111902.1 ENSMUSG00000111902 ENSMUST00000219804 Gm4921 processed_pseudogene Interval_144480 chr7 25376467 25377607 + 0 NA intron (ENSMUSG00000053714.8, intron 1 of 5) antisense-intron (ENSMUSG00000053714.8, intron 1 of 6) 218 ENSMUSG00000053714.8 ENSMUSG00000053714 ENSMUST00000206300 4732471J01Rik antisense Interval_96053 chr2 119471067 119471405 + 0 NA intron (ENSMUSG00000034154.15, intron 1 of 27) protein_coding-intron (ENSMUSG00000034154.15, intron 1 of 35) -31556 ENSMUSG00000034154.15 ENSMUSG00000034154 ENSMUST00000138707 Ino80 protein_coding Interval_16720 chr10 67204596 67205076 + 0 NA intron (ENSMUSG00000037876.17, intron 3 of 25) protein_coding-intron (ENSMUSG00000037876.17, intron 3 of 25) 19088 ENSMUSG00000037876.17 ENSMUSG00000037876 ENSMUST00000173236 Jmjd1c protein_coding Interval_5877 chr1 92894837 92895686 + 0 NA intron (ENSMUSG00000034212.14, intron 4 of 17) protein_coding-intron (ENSMUSG00000034212.14, intron 4 of 17) -11720 ENSMUSG00000047067.7 ENSMUSG00000047067 ENSMUST00000060913 Dusp28 protein_coding Interval_13053 chr10 10517415 10517706 + 0 NA Intergenic Intergenic 40621 ENSMUSG00000019832.5 ENSMUSG00000019832 ENSMUST00000220018 Rab32 protein_coding Interval_125088 chr5 64367650 64368589 + 0 NA Intergenic Intergenic 7605 ENSMUSG00000105730.1 ENSMUSG00000105730 ENSMUST00000196357 Gm43838 lincRNA Interval_3501 chr1 59094306 59095218 + 0 NA exon (ENSMUSG00000072295.7, exon 1 of 13) protein_coding-exon (ENSMUSG00000072295.7, exon 1 of 13) 131 ENSMUSG00000072295.7 ENSMUSG00000072295 ENSMUST00000149784 C2cd6 protein_coding Interval_131174 chr5 135609590 135611150 + 0 NA Intergenic Intergenic 6929 ENSMUSG00000107029.1 ENSMUSG00000107029 ENSMUST00000201893 Gm43123 TEC Interval_116299 chr4 109439640 109440025 + 0 NA intron (ENSMUSG00000028555.15, intron 13 of 17) protein_coding-intron (ENSMUSG00000028555.15, intron 13 of 17) 25056 ENSMUSG00000028555.15 ENSMUSG00000028555 ENSMUST00000139237 Ttc39a protein_coding Interval_38048 chr12 75171135 75171403 + 0 NA intron (ENSMUSG00000034402.3, intron 1 of 10) protein_coding-intron (ENSMUSG00000034402.3, intron 1 of 10) 6063 ENSMUSG00000034402.3 ENSMUSG00000034402 ENSMUST00000042299 Kcnh5 protein_coding Interval_109868 chr3 149175108 149175463 + 0 NA Intergenic Intergenic -34986 ENSMUSG00000105357.1 ENSMUSG00000105357 ENSMUST00000195939 Gm42647 processed_pseudogene Interval_159196 chr8 91571899 91573088 + 0 NA intron (ENSMUSG00000055932.15, intron 5 of 5) protein_coding-intron (ENSMUSG00000055932.15, intron 8 of 8) -6795 ENSMUSG00000110068.1 ENSMUSG00000110068 ENSMUST00000210685 Gm45294 TEC Interval_62370 chr15 91255784 91256565 + 0 NA intron (ENSMUSG00000078932.8, intron 11 of 12) protein_coding-intron (ENSMUSG00000078932.8, intron 10 of 11) 56680 ENSMUSG00000078932.8 ENSMUSG00000078932 ENSMUST00000109284 CN725425 protein_coding Interval_156177 chr8 45615070 45615640 + 0 NA intron (ENSMUSG00000031626.18, intron 1 of 23) protein_coding-intron (ENSMUSG00000031626.18, intron 1 of 25) -10215 ENSMUSG00000084954.2 ENSMUSG00000084954 ENSMUST00000142008 Gm16351 antisense Interval_75647 chr17 69798427 69798764 + 0 NA Intergenic Intergenic -22583 ENSMUSG00000117124.1 ENSMUSG00000117124 ENSMUST00000233218 Gm49895 lincRNA Interval_93439 chr2 73064027 73065374 + 0 NA Intergenic Intergenic -52048 ENSMUSG00000082455.3 ENSMUSG00000082455 ENSMUST00000120830 Gm13665 processed_pseudogene Interval_27387 chr11 67152878 67154204 + 0 NA Intergenic Intergenic -17486 ENSMUSG00000033196.17 ENSMUSG00000033196 ENSMUST00000018641 Myh2 protein_coding Interval_92804 chr2 65555415 65555734 + 0 NA intron (ENSMUSG00000057182.15, intron 1 of 15) protein_coding-intron (ENSMUSG00000057182.15, intron 1 of 26) -30916 ENSMUSG00000057182.15 ENSMUSG00000057182 ENSMUST00000126837 Scn3a protein_coding Interval_144247 chr7 23883986 23884762 + 0 NA Intergenic Intergenic -7635 ENSMUSG00000062598.3 ENSMUSG00000062598 ENSMUST00000078593 Vmn1r178 protein_coding Interval_75587 chr17 68988933 68990115 + 0 NA Intergenic Intergenic -137476 ENSMUSG00000024044.19 ENSMUSG00000024044 ENSMUST00000223565 Epb41l3 protein_coding Interval_164136 chr9 31925599 31926672 + 0 NA Intergenic Intergenic 10665 ENSMUSG00000091639.2 ENSMUSG00000091639 ENSMUST00000169182 Gm3756 processed_pseudogene Interval_159943 chr8 105313523 105314392 + 0 NA exon (ENSMUSG00000041679.9, exon 3 of 3) protein_coding-exon (ENSMUSG00000041679.9, exon 3 of 3) -5497 ENSMUSG00000070130.1 ENSMUSG00000070130 ENSMUST00000093622 Mir328 miRNA Interval_139194 chr6 97080082 97080538 + 0 NA Intergenic Intergenic -19917 ENSMUSG00000046500.8 ENSMUSG00000046500 ENSMUST00000203930 Tafa4 protein_coding Interval_80475 chr18 42554076 42554338 + 0 NA intron (ENSMUSG00000024498.16, intron 1 of 1) protein_coding-intron (ENSMUSG00000024498.16, intron 13 of 20) 825 ENSMUSG00000024498.16 ENSMUSG00000024498 ENSMUST00000237162 Tcerg1 protein_coding Interval_102051 chr3 16182697 16183939 + 0 NA promoter-TSS (ENSMUSG00000047213.14) protein_coding-promoter-TSS (ENSMUSG00000047213.14) 82 ENSMUSG00000047213.14 ENSMUSG00000047213 ENSMUST00000108346 Ythdf3 protein_coding Interval_106772 chr3 100677388 100677651 + 0 NA TTS (ENSMUSG00000106184.1) sense_intronic-TTS (ENSMUSG00000106184.1) 2575 ENSMUSG00000106184.1 ENSMUSG00000106184 ENSMUST00000195967 Gm43463 sense_intronic Interval_115845 chr4 105205000 105205897 + 0 NA intron (ENSMUSG00000028517.8, intron 2 of 5) protein_coding-intron (ENSMUSG00000028517.8, intron 2 of 5) 48101 ENSMUSG00000028517.8 ENSMUSG00000028517 ENSMUST00000064139 Plpp3 protein_coding Interval_1600 chr1 29368301 29368751 + 0 NA Intergenic Intergenic -7156 ENSMUSG00000080391.1 ENSMUSG00000080391 ENSMUST00000116741 Gm23785 miRNA Interval_48025 chr13 95336048 95337025 + 0 NA TTS (ENSMUSG00000041995.8) protein_coding-TTS (ENSMUSG00000041995.8) 3918 ENSMUSG00000077380.1 ENSMUSG00000077380 ENSMUST00000104192 Gm22661 snoRNA Interval_107765 chr3 113647444 113648270 + 0 NA Intergenic Intergenic -15673 ENSMUSG00000105836.1 ENSMUSG00000105836 ENSMUST00000195893 Gm17954 processed_pseudogene Interval_125760 chr5 73937483 73938888 + 0 NA Intergenic Intergenic -8196 ENSMUSG00000106968.1 ENSMUSG00000106968 ENSMUST00000202711 C78283 lincRNA Interval_114241 chr4 69838716 69839429 + 0 NA Intergenic Intergenic -14875 ENSMUSG00000085627.2 ENSMUSG00000085627 ENSMUST00000119005 Gm11222 processed_pseudogene Interval_140077 chr6 113881750 113882251 + 0 NA intron (ENSMUSG00000030302.16, intron 3 of 3) protein_coding-intron (ENSMUSG00000030302.16, intron 1 of 19) 9539 ENSMUSG00000030302.16 ENSMUSG00000030302 ENSMUST00000154738 Atp2b2 protein_coding Interval_78017 chr18 6757755 6758739 + 0 NA intron (ENSMUSG00000073639.6, intron 1 of 4) protein_coding-intron (ENSMUSG00000073639.6, intron 1 of 4) 2712 ENSMUSG00000117359.1 ENSMUSG00000117359 ENSMUST00000234092 Gm7466 processed_pseudogene Interval_5440 chr1 88795244 88795854 + 0 NA Intergenic Intergenic 40659 ENSMUSG00000097398.2 ENSMUSG00000097398 ENSMUST00000180596 Platr5 lincRNA Interval_40937 chr12 110029208 110029416 + 0 NA Intergenic Intergenic -5439 ENSMUSG00000113063.1 ENSMUSG00000113063 ENSMUST00000222974 Gm34667 lincRNA Interval_34063 chr11 120268581 120270123 + 0 NA intron (ENSMUSG00000039741.15, intron 4 of 27) protein_coding-intron (ENSMUSG00000039741.15, intron 4 of 27) -5135 ENSMUSG00000104657.1 ENSMUSG00000104657 ENSMUST00000197891 Gm47297 miRNA Interval_174776 chrX 166474411 166474708 + 0 NA intron (ENSMUSG00000079316.10, intron 1 of 4) protein_coding-intron (ENSMUSG00000079316.10, intron 1 of 4) 876 ENSMUSG00000079316.10 ENSMUSG00000079316 ENSMUST00000149315 Rab9 protein_coding Interval_82057 chr18 67408535 67409794 + 0 NA TTS (ENSMUSG00000024527.10) protein_coding-TTS (ENSMUSG00000024527.10) 16897 ENSMUSG00000001473.7 ENSMUSG00000001473 ENSMUST00000236667 Tubb6 protein_coding Interval_28121 chr11 72986757 72987439 + 0 NA intron (ENSMUSG00000020788.15, intron 17 of 21) protein_coding-intron (ENSMUSG00000020788.15, intron 17 of 21) -22693 ENSMUSG00000020787.14 ENSMUSG00000020787 ENSMUST00000148964 P2rx1 protein_coding Interval_19192 chr10 95405520 95405911 + 0 NA intron (ENSMUSG00000020027.18, intron 2 of 2) protein_coding-intron (ENSMUSG00000020027.18, intron 1 of 3) 9769 ENSMUSG00000020027.18 ENSMUSG00000020027 ENSMUST00000145847 Socs2 protein_coding Interval_22731 chr11 14080265 14081582 + 0 NA intron (ENSMUSG00000085452.1, intron 2 of 3) lincRNA-intron (ENSMUSG00000085452.1, intron 2 of 3) -81156 ENSMUSG00000081631.1 ENSMUSG00000081631 ENSMUST00000121451 Gm12005 processed_pseudogene Interval_90802 chr2 32681358 32683357 + 0 NA TTS (ENSMUSG00000009566.12) protein_coding-TTS (ENSMUSG00000009566.12) 5409 ENSMUSG00000098972.1 ENSMUSG00000098972 ENSMUST00000185043 Mir8093 miRNA Interval_82064 chr18 67454190 67454427 + 0 NA Intergenic Intergenic -8034 ENSMUSG00000088753.1 ENSMUSG00000088753 ENSMUST00000158128 Gm24900 snoRNA Interval_26432 chr11 57824941 57825660 + 0 NA Intergenic Intergenic 7518 ENSMUSG00000037335.13 ENSMUSG00000037335 ENSMUST00000108845 Hand1 protein_coding Interval_83993 chr19 5987820 5989415 + 0 NA TTS (ENSMUSG00000024942.17) protein_coding-TTS (ENSMUSG00000024942.17) -2474 ENSMUSG00000037451.8 ENSMUSG00000037451 ENSMUST00000237046 Slc22a20 protein_coding Interval_3127 chr1 53749610 53751566 + 0 NA Intergenic Intergenic 12105 ENSMUSG00000026094.14 ENSMUSG00000026094 ENSMUST00000185920 Stk17b protein_coding Interval_165377 chr9 46902522 46903092 + 0 NA Intergenic Intergenic -10686 ENSMUSG00000099696.6 ENSMUSG00000099696 ENSMUST00000189828 2900052N01Rik lincRNA Interval_143429 chr7 6727246 6730615 + 0 NA intron (ENSMUSG00000002265.17, intron 1 of 8) protein_coding-intron (ENSMUSG00000002265.17, intron 1 of 8) 1491 ENSMUSG00000002265.17 ENSMUSG00000002265 ENSMUST00000155910 Peg3 protein_coding Interval_125037 chr5 64007978 64008200 + 0 NA Intergenic Intergenic -5605 ENSMUSG00000077209.1 ENSMUSG00000077209 ENSMUST00000104021 Gm25608 snoRNA Interval_108919 chr3 133349074 133349389 + 0 NA intron (ENSMUSG00000028013.16, intron 7 of 8) protein_coding-intron (ENSMUSG00000028013.16, intron 7 of 11) 27763 ENSMUSG00000028013.16 ENSMUSG00000028013 ENSMUST00000196807 Ppa2 protein_coding Interval_121583 chr5 3614717 3615998 + 0 NA exon (ENSMUSG00000005907.14, exon 5 of 5) protein_coding-exon (ENSMUSG00000005907.14, exon 5 of 5) 10006 ENSMUSG00000105130.1 ENSMUSG00000105130 ENSMUST00000199650 Gm43825 antisense Interval_63187 chr15 99626347 99626729 + 0 NA TTS (ENSMUSG00000023015.14) protein_coding-TTS (ENSMUSG00000023015.14) 25074 ENSMUSG00000023015.14 ENSMUSG00000023015 ENSMUST00000109581 Racgap1 protein_coding Interval_147322 chr7 65839675 65840263 + 0 NA Intergenic Intergenic 22023 ENSMUSG00000093405.1 ENSMUSG00000093405 ENSMUST00000176744 Gm20684 bidirectional_promoter_lncRNA Interval_38688 chr12 81033902 81034191 + 0 NA intron (ENSMUSG00000021136.13, intron 1 of 11) protein_coding-intron (ENSMUSG00000021136.13, intron 1 of 12) 7218 ENSMUSG00000021136.13 ENSMUSG00000021136 ENSMUST00000129362 Smoc1 protein_coding Interval_38916 chr12 83781413 83782378 + 0 NA TTS (ENSMUSG00000021223.13) protein_coding-TTS (ENSMUSG00000021223.13) 18233 ENSMUSG00000021223.13 ENSMUSG00000021223 ENSMUST00000152904 Papln protein_coding Interval_110780 chr4 8292403 8292599 + 0 NA Intergenic Intergenic -53460 ENSMUSG00000041261.9 ENSMUSG00000041261 ENSMUST00000066674 Car8 protein_coding Interval_70640 chr17 12709399 12710222 + 0 NA intron (ENSMUSG00000023830.14, intron 21 of 47) protein_coding-intron (ENSMUSG00000023830.14, intron 21 of 47) -8531 ENSMUSG00000023830.14 ENSMUSG00000023830 ENSMUST00000159127 Igf2r protein_coding Interval_36077 chr12 35207662 35208359 + 0 NA Intergenic Intergenic -13113 ENSMUSG00000076253.1 ENSMUSG00000076253 ENSMUST00000102298 Mir680-3 miRNA Interval_152707 chr7 136660026 136661258 + 0 NA Intergenic Intergenic 3433 ENSMUSG00000109894.1 ENSMUSG00000109894 ENSMUST00000210286 Gm5904 processed_pseudogene Interval_54784 chr14 75030636 75031089 + 0 NA intron (ENSMUSG00000034959.8, intron 1 of 13) protein_coding-intron (ENSMUSG00000034959.8, intron 1 of 13) -5760 ENSMUSG00000034959.8 ENSMUSG00000034959 ENSMUST00000228689 Rubcnl protein_coding Interval_160669 chr8 111500128 111500528 + 0 NA intron (ENSMUSG00000031959.15, intron 5 of 26) protein_coding-intron (ENSMUSG00000031959.15, intron 5 of 26) -9575 ENSMUSG00000031959.15 ENSMUSG00000031959 ENSMUST00000212327 Wdr59 protein_coding Interval_43175 chr13 24860913 24861562 + 0 NA intron (ENSMUSG00000006711.15, intron 4 of 19) protein_coding-intron (ENSMUSG00000006711.15, intron 4 of 20) 29556 ENSMUSG00000035958.3 ENSMUSG00000035958 ENSMUST00000224542 Tdp2 protein_coding Interval_99881 chr2 165547108 165548091 + 0 NA Intergenic Intergenic 38818 ENSMUSG00000027661.4 ENSMUSG00000027661 ENSMUST00000148463 Slc2a10 protein_coding Interval_28776 chr11 78247521 78248423 + 0 NA intron (ENSMUSG00000002064.10, intron 1 of 2) protein_coding-intron (ENSMUSG00000002064.10, intron 1 of 2) -2449 ENSMUSG00000002064.10 ENSMUSG00000002064 ENSMUST00000133020 Sdf2 protein_coding Interval_105216 chr3 83922532 83923122 + 0 NA intron (ENSMUSG00000033767.14, intron 21 of 21) protein_coding-intron (ENSMUSG00000033767.14, intron 24 of 33) -15248 ENSMUSG00000033767.14 ENSMUSG00000033767 ENSMUST00000192811 Tmem131l protein_coding Interval_71158 chr17 20505300 20505488 + 0 NA exon (ENSMUSG00000043537.2, exon 2 of 2) protein_coding-exon (ENSMUSG00000043537.2, exon 2 of 2) 7236 ENSMUSG00000043537.2 ENSMUSG00000043537 ENSMUST00000061660 Vmn1r225 protein_coding Interval_153115 chr7 141443155 141444185 + 0 NA promoter-TSS (ENSMUSG00000025507.13) protein_coding-promoter-TSS (ENSMUSG00000025507.13) -350 ENSMUSG00000025507.13 ENSMUSG00000025507 ENSMUST00000130878 Pidd1 protein_coding Interval_151562 chr7 123642485 123642966 + 0 NA Intergenic Intergenic -161796 ENSMUSG00000030757.13 ENSMUSG00000030757 ENSMUST00000128217 Zkscan2 protein_coding Interval_150595 chr7 112705553 112706400 + 0 NA intron (ENSMUSG00000055320.18, intron 2 of 2) protein_coding-intron (ENSMUSG00000055320.18, intron 1 of 13) -7975 ENSMUSG00000106046.1 ENSMUSG00000106046 ENSMUST00000199696 Gm44462 miRNA Interval_134271 chr6 24350798 24351306 + 0 NA Intergenic Intergenic 164015 ENSMUSG00000046192.4 ENSMUSG00000046192 ENSMUST00000052277 Iqub protein_coding Interval_52531 chr14 47337163 47337869 + 0 NA Intergenic Intergenic -16460 ENSMUSG00000115728.1 ENSMUSG00000115728 ENSMUST00000227470 Gm49190 processed_pseudogene Interval_166825 chr9 63052176 63052639 + 0 NA Intergenic Intergenic 24847 ENSMUSG00000064855.1 ENSMUSG00000064855 ENSMUST00000082921 Gm24526 snRNA Interval_46023 chr13 60312422 60312787 + 0 NA Intergenic Intergenic -18845 ENSMUSG00000114460.1 ENSMUSG00000114460 ENSMUST00000225199 Gm10779 TEC Interval_55453 chr14 87455518 87456280 + 0 NA intron (ENSMUSG00000022019.16, intron 1 of 11) protein_coding-intron (ENSMUSG00000022019.16, intron 1 of 13) -14209 ENSMUSG00000115484.1 ENSMUSG00000115484 ENSMUST00000227005 Gm33121 processed_pseudogene Interval_123433 chr5 32494298 32495176 + 0 NA exon (ENSMUSG00000014956.15, exon 8 of 8) protein_coding-exon (ENSMUSG00000014956.15, exon 8 of 8) -14852 ENSMUSG00000080753.1 ENSMUSG00000080753 ENSMUST00000118396 Gm15613 processed_pseudogene Interval_164717 chr9 40779936 40782538 + 0 NA exon (ENSMUSG00000032024.10, exon 6 of 7) protein_coding-exon (ENSMUSG00000032024.10, exon 6 of 7) 2944 ENSMUSG00000087135.7 ENSMUSG00000087135 ENSMUST00000132716 Gm16096 processed_transcript Interval_88365 chr2 4475878 4476429 + 0 NA intron (ENSMUSG00000026657.17, intron 4 of 24) protein_coding-intron (ENSMUSG00000026657.17, intron 3 of 23) -9483 ENSMUSG00000086874.1 ENSMUSG00000086874 ENSMUST00000139479 Gm13175 antisense Interval_172462 chrX 20771110 20772251 + 0 NA Intergenic Intergenic -7136 ENSMUSG00000118509.1 ENSMUSG00000118509 ENSMUST00000238979 AL671885.1 unprocessed_pseudogene Interval_88044 chr19 58351325 58351746 + 0 NA intron (ENSMUSG00000025089.15, intron 3 of 8) protein_coding-intron (ENSMUSG00000025089.15, intron 5 of 10) 102931 ENSMUSG00000025089.15 ENSMUSG00000025089 ENSMUST00000135730 Gfra1 protein_coding Interval_45207 chr13 53193247 53194892 + 0 NA intron (ENSMUSG00000021464.14, intron 1 of 8) protein_coding-intron (ENSMUSG00000021464.14, intron 1 of 8) 81589 ENSMUSG00000021464.14 ENSMUSG00000021464 ENSMUST00000149299 Ror2 protein_coding Interval_131561 chr5 138132581 138133196 + 0 NA intron (ENSMUSG00000037017.15, intron 3 of 3) protein_coding-intron (ENSMUSG00000037017.15, intron 4 of 4) 15908 ENSMUSG00000037017.15 ENSMUSG00000037017 ENSMUST00000110959 Zscan21 protein_coding Interval_41197 chr12 111731996 111733360 + 0 NA promoter-TSS (ENSMUSG00000090026.1) antisense-promoter-TSS (ENSMUSG00000090026.1) -847 ENSMUSG00000090026.1 ENSMUSG00000090026 ENSMUST00000161925 Gm15996 antisense Interval_120004 chr4 141328579 141328998 + 0 NA exon (ENSMUSG00000006445.3, exon 17 of 17) protein_coding-exon (ENSMUSG00000006445.3, exon 17 of 17) 11875 ENSMUSG00000006445.3 ENSMUSG00000006445 ENSMUST00000149002 Epha2 protein_coding Interval_92841 chr2 66235722 66235976 + 0 NA promoter-TSS (ENSMUSG00000034848.17) protein_coding-promoter-TSS (ENSMUSG00000034848.17) -711 ENSMUSG00000034848.17 ENSMUSG00000034848 ENSMUST00000131503 Ttc21b protein_coding Interval_77116 chr17 86689333 86689610 + 0 NA Intergenic Intergenic -3975 ENSMUSG00000117568.1 ENSMUSG00000117568 ENSMUST00000234033 Gm18832 processed_pseudogene Interval_73950 chr17 45629359 45630802 + 0 NA TTS (ENSMUSG00000058626.16) protein_coding-TTS (ENSMUSG00000058626.16) 9401 ENSMUSG00000065743.1 ENSMUSG00000065743 ENSMUST00000083809 Gm25008 snRNA Interval_39974 chr12 100186534 100188360 + 0 NA promoter-TSS (ENSMUSG00000072884.10) processed_transcript-promoter-TSS (ENSMUSG00000072884.10) 436 ENSMUSG00000113335.1 ENSMUSG00000113335 ENSMUST00000220866 Gm48296 TEC Interval_130300 chr5 125505616 125506428 + 0 NA promoter-TSS (ENSMUSG00000029482.4) protein_coding-promoter-TSS (ENSMUSG00000029482.4) -9221 ENSMUSG00000029482.4 ENSMUSG00000029482 ENSMUST00000200286 Aacs protein_coding Interval_7143 chr1 127197209 127197819 + 0 NA Intergenic Intergenic -7514 ENSMUSG00000036155.13 ENSMUSG00000036155 ENSMUST00000171405 Mgat5 protein_coding Interval_29321 chr11 82914621 82915790 + 0 NA intron (ENSMUSG00000018845.14, intron 5 of 19) protein_coding-intron (ENSMUSG00000018845.14, intron 5 of 19) 3952 ENSMUSG00000018845.14 ENSMUSG00000018845 ENSMUST00000142336 Unc45b protein_coding Interval_114238 chr4 69762363 69762597 + 0 NA Intergenic Intergenic 70502 ENSMUSG00000082998.3 ENSMUSG00000082998 ENSMUST00000117230 Gm11221 processed_pseudogene Interval_51675 chr14 31284462 31284649 + 0 NA exon (ENSMUSG00000019027.8, exon 43 of 78) protein_coding-exon (ENSMUSG00000019027.8, exon 43 of 78) -15044 ENSMUSG00000019027.8 ENSMUSG00000019027 ENSMUST00000228429 Dnah1 protein_coding Interval_31096 chr11 98114897 98115715 + 0 NA intron (ENSMUSG00000020883.18, intron 2 of 5) protein_coding-intron (ENSMUSG00000020883.18, intron 3 of 14) -29882 ENSMUSG00000084896.1 ENSMUSG00000084896 ENSMUST00000145489 Gm11632 processed_transcript Interval_152185 chr7 130503665 130503988 + 0 NA exon (ENSMUSG00000030850.17, exon 7 of 12) protein_coding-exon (ENSMUSG00000030850.17, exon 7 of 12) 15635 ENSMUSG00000030850.17 ENSMUSG00000030850 ENSMUST00000207141 Ate1 protein_coding Interval_65442 chr16 22372449 22373057 + 0 NA Intergenic Intergenic 29076 ENSMUSG00000013089.15 ENSMUSG00000013089 ENSMUST00000170393 Etv5 protein_coding Interval_120150 chr4 143052645 143053709 + 0 NA intron (ENSMUSG00000110067.2, intron 1 of 1) protein_coding-intron (ENSMUSG00000110067.2, intron 1 of 2) 20589 ENSMUSG00000110067.2 ENSMUSG00000110067 ENSMUST00000238915 6330411D24Rik protein_coding Interval_78308 chr18 11885343 11885596 + 0 NA intron (ENSMUSG00000040957.15, intron 2 of 8) protein_coding-intron (ENSMUSG00000040957.15, intron 2 of 8) -27662 ENSMUSG00000117430.1 ENSMUSG00000117430 ENSMUST00000234828 Gm49968 TEC Interval_170411 chr9 107735852 107736593 + 0 NA Intergenic Intergenic 24341 ENSMUSG00000032580.12 ENSMUSG00000032580 ENSMUST00000181993 Rbm5 protein_coding Interval_147722 chr7 72996501 72996916 + 0 NA Intergenic Intergenic -6555 ENSMUSG00000098035.1 ENSMUSG00000098035 ENSMUST00000182995 Gm5335 processed_pseudogene Interval_900 chr1 13070947 13071615 + 0 NA intron (ENSMUSG00000099498.1, intron 1 of 3) lincRNA-intron (ENSMUSG00000099498.1, intron 1 of 3) 2443 ENSMUSG00000099498.1 ENSMUSG00000099498 ENSMUST00000187394 Gm29283 lincRNA Interval_151909 chr7 127477493 127479261 + 0 NA promoter-TSS (ENSMUSG00000042423.9) protein_coding-promoter-TSS (ENSMUSG00000042423.9) -1638 ENSMUSG00000042423.9 ENSMUSG00000042423 ENSMUST00000205967 Fbrs protein_coding Interval_113858 chr4 59388732 59388931 + 0 NA intron (ENSMUSG00000038578.15, intron 6 of 16) protein_coding-intron (ENSMUSG00000038578.15, intron 6 of 16) -19965 ENSMUSG00000083979.1 ENSMUSG00000083979 ENSMUST00000117967 Gm12527 processed_pseudogene Interval_143811 chr7 16452652 16453795 + 0 NA intron (ENSMUSG00000019158.9, intron 1 of 2) protein_coding-intron (ENSMUSG00000019158.9, intron 1 of 2) 260 ENSMUSG00000019158.9 ENSMUSG00000019158 ENSMUST00000209536 Tmem160 protein_coding Interval_143627 chr7 13345861 13346091 + 0 NA intron (ENSMUSG00000033847.15, intron 12 of 16) protein_coding-intron (ENSMUSG00000033847.15, intron 11 of 15) 7146 ENSMUSG00000087915.1 ENSMUSG00000087915 ENSMUST00000157290 Gm24909 misc_RNA Interval_1527 chr1 24766928 24767391 + 0 NA TTS (ENSMUSG00000073725.8) protein_coding-TTS (ENSMUSG00000073725.8) 88529 ENSMUSG00000073725.8 ENSMUSG00000073725 ENSMUST00000190195 Lmbrd1 protein_coding Interval_69969 chr17 3593220 3593494 + 0 NA Intergenic Intergenic 35533 ENSMUSG00000116852.1 ENSMUSG00000116852 ENSMUST00000231344 1700102H20Rik lincRNA Interval_133889 chr6 14419250 14419491 + 0 NA Intergenic Intergenic -29319 ENSMUSG00000107403.1 ENSMUSG00000107403 ENSMUST00000204077 Gm8820 processed_pseudogene Interval_34314 chr12 3323160 3323542 + 0 NA Intergenic Intergenic -13382 ENSMUSG00000020671.9 ENSMUSG00000020671 ENSMUST00000021001 Rab10 protein_coding Interval_121818 chr5 8460562 8461629 + 0 NA Intergenic Intergenic 38237 ENSMUSG00000054099.11 ENSMUSG00000054099 ENSMUST00000198119 Slc25a40 protein_coding Interval_72622 chr17 31112965 31114264 + 0 NA intron (ENSMUSG00000024030.7, intron 2 of 2) protein_coding-intron (ENSMUSG00000024030.7, intron 14 of 14) 16032 ENSMUSG00000024029.4 ENSMUSG00000024029 ENSMUST00000024827 Tff3 protein_coding Interval_22177 chr11 6840394 6841464 + 0 NA Intergenic Intergenic -3804 ENSMUSG00000099102.1 ENSMUSG00000099102 ENSMUST00000184940 Gm11983 protein_coding Interval_128107 chr5 110949493 110950103 + 0 NA intron (ENSMUSG00000033209.17, intron 2 of 22) protein_coding-intron (ENSMUSG00000033209.17, intron 2 of 23) -28867 ENSMUSG00000105112.1 ENSMUSG00000105112 ENSMUST00000199644 Gm42778 TEC Interval_79440 chr18 31899528 31899764 + 0 NA intron (ENSMUSG00000024400.16, intron 18 of 21) protein_coding-intron (ENSMUSG00000024400.16, intron 18 of 21) 12178 ENSMUSG00000044982.7 ENSMUSG00000044982 ENSMUST00000054984 Sft2d3 protein_coding Interval_107985 chr3 118952524 118952769 + 0 NA intron (ENSMUSG00000033308.16, intron 12 of 22) protein_coding-intron (ENSMUSG00000033308.16, intron 12 of 22) 84402 ENSMUSG00000106542.1 ENSMUSG00000106542 ENSMUST00000197510 Gm43410 TEC Interval_58798 chr15 38126209 38126524 + 0 NA Intergenic Intergenic 47264 ENSMUSG00000115771.1 ENSMUSG00000115771 ENSMUST00000228698 Gm49312 bidirectional_promoter_lncRNA Interval_60660 chr15 75993332 75994617 + 0 NA intron (ENSMUSG00000063704.13, intron 1 of 4) protein_coding-intron (ENSMUSG00000063704.13, intron 1 of 13) -4397 ENSMUSG00000063704.13 ENSMUSG00000063704 ENSMUST00000230929 Mapk15 protein_coding Interval_160493 chr8 109985368 109986449 + 0 NA Intergenic Intergenic -4598 ENSMUSG00000001670.13 ENSMUSG00000001670 ENSMUST00000143741 Tat protein_coding Interval_97838 chr2 144375037 144376294 + 0 NA promoter-TSS (ENSMUSG00000027425.18) protein_coding-promoter-TSS (ENSMUSG00000027425.18) 6669 ENSMUSG00000098387.2 ENSMUSG00000098387 ENSMUST00000183618 Pet117 protein_coding Interval_139879 chr6 112300706 112300918 + 0 NA intron (ENSMUSG00000057604.9, intron 1 of 5) protein_coding-intron (ENSMUSG00000057604.9, intron 1 of 5) 7581 ENSMUSG00000107559.1 ENSMUSG00000107559 ENSMUST00000204822 Gm44193 TEC Interval_155992 chr8 41573179 41573976 + 0 NA Intergenic Intergenic 36092 ENSMUSG00000098149.1 ENSMUSG00000098149 ENSMUST00000183246 Gapdh-ps14 processed_pseudogene Interval_73535 chr17 39889259 39890006 + 0 NA Intergenic Intergenic -30884 ENSMUSG00000117201.1 ENSMUSG00000117201 ENSMUST00000233556 Gm49834 processed_pseudogene Interval_42099 chr13 8774742 8775227 + 0 NA Intergenic Intergenic 23418 ENSMUSG00000113391.1 ENSMUSG00000113391 ENSMUST00000221553 Gm48327 TEC Interval_108879 chr3 132928968 132929835 + 0 NA intron (ENSMUSG00000040998.18, intron 2 of 10) protein_coding-intron (ENSMUSG00000040998.18, intron 3 of 12) -10469 ENSMUSG00000089431.1 ENSMUSG00000089431 ENSMUST00000158806 Gm23196 snRNA Interval_71301 chr17 22028539 22028783 + 0 NA intron (ENSMUSG00000053347.15, intron 5 of 5) protein_coding-intron (ENSMUSG00000053347.15, intron 5 of 5) 11878 ENSMUSG00000092147.1 ENSMUSG00000092147 ENSMUST00000167568 Gm7052 unprocessed_pseudogene Interval_149534 chr7 99402972 99403820 + 0 NA intron (ENSMUSG00000035314.10, intron 1 of 2) protein_coding-intron (ENSMUSG00000035314.10, intron 2 of 17) -20717 ENSMUSG00000035314.10 ENSMUSG00000035314 ENSMUST00000208061 Gdpd5 protein_coding Interval_77693 chr17 94342123 94342551 + 0 NA Intergenic Intergenic -13474 ENSMUSG00000077433.1 ENSMUSG00000077433 ENSMUST00000104245 Gm22593 snRNA Interval_36182 chr12 38115147 38115448 + 0 NA intron (ENSMUSG00000036095.11, intron 5 of 22) protein_coding-intron (ENSMUSG00000036095.11, intron 5 of 24) 25395 ENSMUSG00000113941.1 ENSMUSG00000113941 ENSMUST00000222392 Gm35755 processed_pseudogene Interval_123900 chr5 36380124 36380503 + 0 NA intron (ENSMUSG00000029093.14, intron 1 of 7) protein_coding-intron (ENSMUSG00000029093.14, intron 1 of 26) -14395 ENSMUSG00000029093.14 ENSMUSG00000029093 ENSMUST00000141508 Sorcs2 protein_coding Interval_85883 chr19 32704378 32704599 + 0 NA intron (ENSMUSG00000013662.6, intron 2 of 9) protein_coding-intron (ENSMUSG00000013662.6, intron 2 of 9) -9618 ENSMUSG00000013662.6 ENSMUSG00000013662 ENSMUST00000237933 Atad1 protein_coding Interval_95221 chr2 104886004 104886760 + 0 NA promoter-TSS (ENSMUSG00000045106.12) protein_coding-promoter-TSS (ENSMUSG00000045106.12) 11180 ENSMUSG00000082934.1 ENSMUSG00000082934 ENSMUST00000119009 Gm13887 processed_pseudogene Interval_160937 chr8 115584536 115584760 + 0 NA promoter-TSS (ENSMUSG00000110592.1) lincRNA-promoter-TSS (ENSMUSG00000110592.1) -744 ENSMUSG00000110592.1 ENSMUSG00000110592 ENSMUST00000212830 4930488N15Rik lincRNA Interval_100193 chr2 167563772 167564871 + 0 NA intron (ENSMUSG00000085596.1, intron 2 of 3) processed_transcript-intron (ENSMUSG00000085596.1, intron 2 of 3) 11007 ENSMUSG00000085596.1 ENSMUSG00000085596 ENSMUST00000127006 Gm11476 processed_transcript Interval_76517 chr17 80708852 80711169 + 0 NA intron (ENSMUSG00000024242.15, intron 1 of 1) protein_coding-intron (ENSMUSG00000024242.15, intron 1 of 33) -18121 ENSMUSG00000054957.5 ENSMUSG00000054957 ENSMUST00000068277 Gm9959 pseudogene Interval_156836 chr8 60956531 60957185 + 0 NA intron (ENSMUSG00000004319.15, intron 1 of 11) protein_coding-intron (ENSMUSG00000004319.15, intron 2 of 13) 26386 ENSMUSG00000004319.15 ENSMUSG00000004319 ENSMUST00000145493 Clcn3 protein_coding Interval_67557 chr16 50779353 50779975 + 0 NA Intergenic Intergenic -3814 ENSMUSG00000092276.2 ENSMUSG00000092276 ENSMUST00000174511 1700116B05Rik lincRNA Interval_42307 chr13 11952148 11952694 + 0 NA intron (ENSMUSG00000021313.16, intron 1 of 2) protein_coding-intron (ENSMUSG00000021313.16, intron 1 of 104) 12863 ENSMUSG00000098110.1 ENSMUSG00000098110 ENSMUST00000182176 Gm26956 processed_pseudogene Interval_85803 chr19 31825016 31825922 + 0 NA Intergenic Intergenic -43312 ENSMUSG00000052595.8 ENSMUSG00000052595 ENSMUST00000225165 A1cf protein_coding Interval_130077 chr5 124115981 124116742 + 0 NA promoter-TSS (ENSMUSG00000029404.15) protein_coding-promoter-TSS (ENSMUSG00000029404.15) -950 ENSMUSG00000029404.15 ENSMUSG00000029404 ENSMUST00000196401 Arl6ip4 protein_coding Interval_50395 chr14 12405993 12406199 + 0 NA exon (ENSMUSG00000054423.14, exon 1 of 3) protein_coding-exon (ENSMUSG00000054423.14, exon 1 of 3) 192 ENSMUSG00000054423.14 ENSMUSG00000054423 ENSMUST00000225606 Cadps protein_coding Interval_88323 chr2 3758227 3758966 + 0 NA intron (ENSMUSG00000026655.15, intron 2 of 4) protein_coding-intron (ENSMUSG00000026655.15, intron 1 of 3) -3419 ENSMUSG00000085205.1 ENSMUSG00000085205 ENSMUST00000131044 Gm13185 antisense Interval_115813 chr4 104818132 104819568 + 0 NA intron (ENSMUSG00000035031.15, intron 9 of 9) protein_coding-intron (ENSMUSG00000035031.15, intron 10 of 11) 19642 ENSMUSG00000029656.13 ENSMUSG00000029656 ENSMUST00000123892 C8b protein_coding Interval_11755 chr1 185220376 185221275 + 0 NA intron (ENSMUSG00000039318.12, intron 1 of 34) protein_coding-intron (ENSMUSG00000039318.12, intron 1 of 34) -22082 ENSMUSG00000077571.1 ENSMUSG00000077571 ENSMUST00000104383 Snora36b snoRNA Interval_107111 chr3 103641479 103641895 + 0 NA intron (ENSMUSG00000027849.19, intron 4 of 4) protein_coding-intron (ENSMUSG00000027849.19, intron 4 of 4) 4381 ENSMUSG00000087119.4 ENSMUSG00000087119 ENSMUST00000117271 Atg4a-ps protein_coding Interval_94490 chr2 91629718 91630751 + 0 NA TTS (ENSMUSG00000027249.15) protein_coding-TTS (ENSMUSG00000027249.15) 6161 ENSMUSG00000027249.15 ENSMUSG00000027249 ENSMUST00000153182 F2 protein_coding Interval_81185 chr18 56024604 56024873 + 0 NA Intergenic Intergenic -37211 ENSMUSG00000088617.1 ENSMUSG00000088617 ENSMUST00000157992 Gm22484 misc_RNA Interval_146155 chr7 44398634 44399646 + 0 NA exon (ENSMUSG00000030731.13, exon 10 of 11) protein_coding-exon (ENSMUSG00000030731.13, exon 10 of 11) 12740 ENSMUSG00000108372.1 ENSMUSG00000108372 ENSMUST00000206723 Gm45124 TEC Interval_48156 chr13 96747385 96748889 + 0 NA promoter-TSS (ENSMUSG00000109561.1) protein_coding-promoter-TSS (ENSMUSG00000109561.1) -135 ENSMUSG00000109561.1 ENSMUSG00000109561 ENSMUST00000208004 Ankrd31 protein_coding Interval_18236 chr10 84059666 84060274 + 0 NA intron (ENSMUSG00000111049.1, intron 2 of 4) lincRNA-intron (ENSMUSG00000111049.1, intron 2 of 4) -1788 ENSMUSG00000104317.1 ENSMUSG00000104317 ENSMUST00000195828 Gm37908 TEC Interval_10651 chr1 172457310 172458484 + 0 NA promoter-TSS (ENSMUSG00000103357.1) transcribed_processed_pseudogene-promoter-TSS (ENSMUSG00000103357.1) -16137 ENSMUSG00000103357.1 ENSMUSG00000103357 ENSMUST00000194187 Gm7804 transcribed_processed_pseudogene Interval_72316 chr17 29165170 29166152 + 0 NA intron (ENSMUSG00000024008.16, intron 4 of 5) protein_coding-intron (ENSMUSG00000024008.16, intron 14 of 20) -6156 ENSMUSG00000024008.16 ENSMUSG00000024008 ENSMUST00000126755 Cpne5 protein_coding Interval_136786 chr6 60258868 60259958 + 0 NA Intergenic Intergenic 8621 ENSMUSG00000064515.1 ENSMUSG00000064515 ENSMUST00000082581 n-R5s162 rRNA Interval_159030 chr8 88952995 88953955 + 0 NA Intergenic Intergenic -71260 ENSMUSG00000099078.1 ENSMUSG00000099078 ENSMUST00000183771 Mir8110 miRNA Interval_65453 chr16 22409036 22409527 + 0 NA intron (ENSMUSG00000013089.15, intron 3 of 3) protein_coding-intron (ENSMUSG00000013089.15, intron 7 of 12) -7452 ENSMUSG00000013089.15 ENSMUSG00000013089 ENSMUST00000170393 Etv5 protein_coding Interval_149459 chr7 98740199 98741175 + 0 NA Intergenic Intergenic -5606 ENSMUSG00000108988.1 ENSMUSG00000108988 ENSMUST00000208941 Gm44934 lincRNA Interval_135437 chr6 39366863 39367373 + 0 NA TTS (ENSMUSG00000029924.12) protein_coding-TTS (ENSMUSG00000029924.12) 10539 ENSMUSG00000029924.12 ENSMUSG00000029924 ENSMUST00000202785 Slc37a3 protein_coding Interval_13729 chr10 21509702 21509974 + 0 NA Intergenic Intergenic -64202 ENSMUSG00000112738.1 ENSMUSG00000112738 ENSMUST00000219604 Gm48386 processed_pseudogene Interval_54711 chr14 73507842 73508239 + 0 NA Intergenic Intergenic -1998 ENSMUSG00000022109.6 ENSMUSG00000022109 ENSMUST00000228141 Med4 protein_coding Interval_135084 chr6 35254134 35254906 + 0 NA intron (ENSMUSG00000073155.12, intron 1 of 2) protein_coding-intron (ENSMUSG00000073155.12, intron 2 of 3) 1866 ENSMUSG00000073155.12 ENSMUSG00000073155 ENSMUST00000136110 1810058I24Rik protein_coding Interval_31337 chr11 100121197 100121889 + 0 NA promoter-TSS (ENSMUSG00000044041.4) protein_coding-promoter-TSS (ENSMUSG00000044041.4) -2709 ENSMUSG00000044041.4 ENSMUSG00000044041 ENSMUST00000128934 Krt13 protein_coding Interval_19089 chr10 94426090 94427059 + 0 NA intron (ENSMUSG00000020023.18, intron 1 of 1) protein_coding-intron (ENSMUSG00000020023.18, intron 1 of 2) 17683 ENSMUSG00000085409.1 ENSMUSG00000085409 ENSMUST00000155180 Gm16155 sense_intronic Interval_22605 chr11 12238016 12239040 + 0 NA intron (ENSMUSG00000020173.17, intron 7 of 7) protein_coding-intron (ENSMUSG00000020173.17, intron 14 of 14) -83747 ENSMUSG00000086584.8 ENSMUSG00000086584 ENSMUST00000174550 Gm12002 antisense Interval_56927 chr14 123552804 123553359 + 0 NA intron (ENSMUSG00000000197.8, intron 7 of 10) protein_coding-intron (ENSMUSG00000000197.8, intron 7 of 43) 74063 ENSMUSG00000000197.8 ENSMUSG00000000197 ENSMUST00000228766 Nalcn protein_coding Interval_134068 chr6 18651482 18652837 + 0 NA Intergenic Intergenic -75133 ENSMUSG00000095722.1 ENSMUSG00000095722 ENSMUST00000180301 Gm23648 snRNA Interval_105293 chr3 84637993 84640366 + 0 NA intron (ENSMUSG00000102805.5, intron 3 of 9) protein_coding-intron (ENSMUSG00000102805.5, intron 3 of 9) -27031 ENSMUSG00000056498.13 ENSMUSG00000056498 ENSMUST00000128344 Tmem154 protein_coding Interval_17967 chr10 81117641 81117929 + 0 NA promoter-TSS (ENSMUSG00000035027.18) protein_coding-promoter-TSS (ENSMUSG00000035027.18) -1555 ENSMUSG00000035027.18 ENSMUSG00000035027 ENSMUST00000218571 Map2k2 protein_coding Interval_49983 chr13 119296892 119298410 + 0 NA Intergenic Intergenic -18106 ENSMUSG00000114736.1 ENSMUSG00000114736 ENSMUST00000223952 Gm47336 lincRNA Interval_27748 chr11 69774884 69777067 + 0 NA TTS (ENSMUSG00000018750.14) protein_coding-TTS (ENSMUSG00000018750.14) 9959 ENSMUSG00000018750.14 ENSMUSG00000018750 ENSMUST00000108638 Zbtb4 protein_coding Interval_169912 chr9 102903274 102903696 + 0 NA intron (ENSMUSG00000032547.12, intron 12 of 13) protein_coding-intron (ENSMUSG00000032547.12, intron 13 of 14) 4930 ENSMUSG00000032547.12 ENSMUSG00000032547 ENSMUST00000177274 Ryk protein_coding Interval_66549 chr16 35031231 35031419 + 0 NA intron (ENSMUSG00000035376.10, intron 2 of 2) protein_coding-intron (ENSMUSG00000035376.10, intron 2 of 6) -8425 ENSMUSG00000116840.1 ENSMUSG00000116840 ENSMUST00000232358 Gm21691 antisense Interval_132095 chr5 142747012 142747242 + 0 NA intron (ENSMUSG00000039477.16, intron 13 of 24) protein_coding-intron (ENSMUSG00000039477.16, intron 13 of 24) 18895 ENSMUSG00000039477.16 ENSMUSG00000039477 ENSMUST00000198181 Tnrc18 protein_coding Interval_112517 chr4 41740510 41741707 + 0 NA promoter-TSS (ENSMUSG00000036078.16) protein_coding-promoter-TSS (ENSMUSG00000036078.16) -60 ENSMUSG00000036078.16 ENSMUSG00000036078 ENSMUST00000123524 Sigmar1 protein_coding Interval_113068 chr4 47473758 47475131 + 0 NA promoter-TSS (ENSMUSG00000039740.6) protein_coding-promoter-TSS (ENSMUSG00000039740.6) -320 ENSMUSG00000053317.11 ENSMUSG00000053317 ENSMUST00000136685 Sec61b protein_coding Interval_69022 chr16 90167561 90168294 + 0 NA Intergenic Intergenic 4747 ENSMUSG00000116553.1 ENSMUSG00000116553 ENSMUST00000231626 Gm7307 processed_pseudogene Interval_11278 chr1 180665292 180665572 + 0 NA intron (ENSMUSG00000058729.13, intron 1 of 5) protein_coding-intron (ENSMUSG00000058729.13, intron 6 of 11) -15455 ENSMUSG00000058729.13 ENSMUSG00000058729 ENSMUST00000194847 Lin9 protein_coding Interval_78222 chr18 10293123 10293964 + 0 NA Intergenic Intergenic 14277 ENSMUSG00000117363.1 ENSMUSG00000117363 ENSMUST00000234780 Gm50033 TEC Interval_98688 chr2 154317795 154318734 + 0 NA intron (ENSMUSG00000067996.5, intron 12 of 14) protein_coding-intron (ENSMUSG00000067996.5, intron 12 of 14) 11037 ENSMUSG00000067996.5 ENSMUSG00000067996 ENSMUST00000088921 Bpifb9b protein_coding Interval_121245 chr4 154347262 154348895 + 0 NA exon (ENSMUSG00000039410.16, exon 6 of 17) protein_coding-exon (ENSMUSG00000039410.16, exon 6 of 17) 11951 ENSMUSG00000097871.1 ENSMUSG00000097871 ENSMUST00000181143 B230104I21Rik lincRNA Interval_125610 chr5 72600858 72601686 + 0 NA Intergenic Intergenic -13885 ENSMUSG00000060204.6 ENSMUSG00000060204 ENSMUST00000239348 Slc10a4l protein_coding Interval_69 GL456212.1 134900 136753 + 0 NA NA NA NA NA Interval_110857 chr4 9031555 9031737 + 0 NA Intergenic Intergenic 90387 ENSMUSG00000083786.1 ENSMUSG00000083786 ENSMUST00000119493 Rps18-ps2 processed_pseudogene Interval_54680 chr14 73237772 73239199 + 0 NA TTS (ENSMUSG00000022105.6) protein_coding-TTS (ENSMUSG00000022105.6) 590 ENSMUSG00000033446.7 ENSMUSG00000033446 ENSMUST00000044405 Lpar6 protein_coding Interval_6115 chr1 97536050 97536381 + 0 NA intron (ENSMUSG00000101348.6, intron 3 of 4) transcribed_unprocessed_pseudogene-intron (ENSMUSG00000101348.6, intron 3 of 4) 9233 ENSMUSG00000103179.1 ENSMUSG00000103179 ENSMUST00000192636 Gm37171 TEC Interval_133604 chr6 7521036 7521351 + 0 NA Intergenic Intergenic -19761 ENSMUSG00000107493.1 ENSMUSG00000107493 ENSMUST00000204531 Gm44048 processed_pseudogene Interval_21965 chr11 5456812 5458244 + 0 NA Intergenic Intergenic 37918 ENSMUSG00000085232.3 ENSMUSG00000085232 ENSMUST00000145746 Gm11962 processed_pseudogene Interval_45915 chr13 59220004 59220545 + 0 NA Intergenic Intergenic -3102 ENSMUSG00000114478.1 ENSMUSG00000114478 ENSMUST00000225924 Gm34558 lincRNA Interval_154439 chr8 17241848 17242671 + 0 NA intron (ENSMUSG00000060924.15, intron 1 of 10) protein_coding-intron (ENSMUSG00000060924.15, intron 1 of 69) 293022 ENSMUSG00000060924.15 ENSMUSG00000060924 ENSMUST00000122983 Csmd1 protein_coding Interval_41704 chr12 117914221 117915463 + 0 NA intron (ENSMUSG00000018581.15, intron 42 of 51) protein_coding-intron (ENSMUSG00000018581.15, intron 72 of 81) 70954 ENSMUSG00000021175.15 ENSMUSG00000021175 ENSMUST00000177339 Cdca7l protein_coding Interval_53281 chr14 55760105 55760574 + 0 NA Intergenic Intergenic -1097 ENSMUSG00000040432.5 ENSMUSG00000040432 ENSMUST00000228302 Ltb4r2 protein_coding Interval_46560 chr13 67167592 67168198 + 0 NA promoter-TSS (ENSMUSG00000114677.1) transcribed_processed_pseudogene-promoter-TSS (ENSMUSG00000114677.1) 114 ENSMUSG00000114677.1 ENSMUSG00000114677 ENSMUST00000225091 Gm48733 transcribed_processed_pseudogene Interval_137353 chr6 71625403 71626731 + 0 NA intron (ENSMUSG00000053470.13, intron 2 of 25) protein_coding-intron (ENSMUSG00000053470.13, intron 3 of 26) 6923 ENSMUSG00000053470.13 ENSMUSG00000053470 ENSMUST00000206597 Kdm3a protein_coding Interval_7403 chr1 131060079 131060853 + 0 NA intron (ENSMUSG00000016528.10, intron 1 of 9) protein_coding-intron (ENSMUSG00000016528.10, intron 1 of 9) 12060 ENSMUSG00000016528.10 ENSMUSG00000016528 ENSMUST00000188459 Mapkapk2 protein_coding Interval_114632 chr4 83316568 83318663 + 0 NA intron (ENSMUSG00000038172.14, intron 1 of 19) protein_coding-intron (ENSMUSG00000038172.14, intron 1 of 6) -31705 ENSMUSG00000096801.1 ENSMUSG00000096801 ENSMUST00000083017 Gm23412 snRNA Interval_44965 chr13 51008480 51008724 + 0 NA Intergenic Intergenic -5484 ENSMUSG00000084609.2 ENSMUSG00000084609 ENSMUST00000122660 Gm22199 misc_RNA Interval_93318 chr2 71898113 71898847 + 0 NA intron (ENSMUSG00000006494.11, intron 8 of 8) protein_coding-intron (ENSMUSG00000006494.11, intron 10 of 10) 25134 ENSMUSG00000006494.11 ENSMUSG00000006494 ENSMUST00000129427 Pdk1 protein_coding Interval_109288 chr3 138668247 138669660 + 0 NA Intergenic Intergenic -25009 ENSMUSG00000105126.1 ENSMUSG00000105126 ENSMUST00000196886 Gm43723 processed_pseudogene Interval_162363 chr8 127435895 127436466 + 0 NA intron (ENSMUSG00000025812.18, intron 3 of 4) protein_coding-intron (ENSMUSG00000025812.18, intron 19 of 23) -125255 ENSMUSG00000090074.1 ENSMUSG00000090074 ENSMUST00000161478 Gm6921 processed_pseudogene Interval_25524 chr11 49554019 49554978 + 0 NA exon (ENSMUSG00000095187.2, exon 2 of 2) protein_coding-exon (ENSMUSG00000095187.2, exon 2 of 2) -2380 ENSMUSG00000107645.2 ENSMUSG00000107645 ENSMUST00000204300 Olfr1380 protein_coding Interval_529 chr1 7029387 7029555 + 0 NA Intergenic Intergenic -6444 ENSMUSG00000103629.1 ENSMUSG00000103629 ENSMUST00000195648 Gm5694 processed_pseudogene Interval_63358 chr15 100525434 100525758 + 0 NA TTS (ENSMUSG00000009733.9) protein_coding-TTS (ENSMUSG00000009733.9) -13352 ENSMUSG00000009733.9 ENSMUSG00000009733 ENSMUST00000231138 Tfcp2 protein_coding Interval_8482 chr1 139942408 139943699 + 0 NA intron (ENSMUSG00000085867.1, intron 4 of 5) unprocessed_pseudogene-intron (ENSMUSG00000085867.1, intron 4 of 5) -6576 ENSMUSG00000089991.2 ENSMUSG00000089991 ENSMUST00000134229 Gm16332 unprocessed_pseudogene Interval_168001 chr9 75352772 75353855 + 0 NA Intergenic Intergenic 5555 ENSMUSG00000032191.6 ENSMUSG00000032191 ENSMUST00000034709 Bcl2l10 protein_coding Interval_32402 chr11 107358607 107359445 + 0 NA intron (ENSMUSG00000040430.18, intron 1 of 9) protein_coding-intron (ENSMUSG00000040430.18, intron 1 of 9) 20976 ENSMUSG00000086298.1 ENSMUSG00000086298 ENSMUST00000154414 Gm11716 antisense Interval_52810 chr14 50807416 50808343 + 0 NA promoter-TSS (ENSMUSG00000036023.6) protein_coding-promoter-TSS (ENSMUSG00000036023.6) -112 ENSMUSG00000092837.1 ENSMUSG00000092837 ENSMUST00000175096 Rpph1 ribozyme Interval_28398 chr11 75653750 75654675 + 0 NA intron (ENSMUSG00000017774.19, intron 1 of 31) protein_coding-intron (ENSMUSG00000017774.19, intron 1 of 31) -16064 ENSMUSG00000017774.19 ENSMUSG00000017774 ENSMUST00000155027 Myo1c protein_coding Interval_110417 chr3 157921113 157922628 + 0 NA intron (ENSMUSG00000028179.12, intron 1 of 2) protein_coding-intron (ENSMUSG00000028179.12, intron 1 of 11) -3350 ENSMUSG00000028177.13 ENSMUSG00000028177 ENSMUST00000196971 1810013D15Rik antisense Interval_62678 chr15 96213895 96214245 + 0 NA intron (ENSMUSG00000097536.2, intron 1 of 6) lincRNA-intron (ENSMUSG00000097536.2, intron 1 of 6) 39917 ENSMUSG00000097619.8 ENSMUSG00000097619 ENSMUST00000229950 4833422M21Rik processed_transcript Interval_54900 chr14 76119000 76119225 + 0 NA intron (ENSMUSG00000022009.1, intron 5 of 9) protein_coding-intron (ENSMUSG00000022009.1, intron 5 of 9) 8221 ENSMUSG00000022009.1 ENSMUSG00000022009 ENSMUST00000022586 Nufip1 protein_coding Interval_25211 chr11 45427172 45427514 + 0 NA Intergenic Intergenic -6559 ENSMUSG00000085476.1 ENSMUSG00000085476 ENSMUST00000123422 Gm12162 lincRNA Interval_65765 chr16 28143612 28143812 + 0 NA Intergenic Intergenic 48363 ENSMUSG00000022523.10 ENSMUSG00000022523 ENSMUST00000231717 Fgf12 protein_coding Interval_107215 chr3 104674329 104675827 + 0 NA Intergenic Intergenic -5068 ENSMUSG00000101641.1 ENSMUSG00000101641 ENSMUST00000191526 Gm29560 TEC Interval_56846 chr14 122400334 122400924 + 0 NA intron (ENSMUSG00000115263.1, intron 1 of 4) protein_coding-intron (ENSMUSG00000025545.10, intron 7 of 7) 6114 ENSMUSG00000115263.1 ENSMUSG00000115263 ENSMUST00000228409 Gm5089 antisense Interval_31341 chr11 100150300 100150754 + 0 NA Intergenic Intergenic -6828 ENSMUSG00000020911.14 ENSMUSG00000020911 ENSMUST00000125888 Krt19 protein_coding Interval_131992 chr5 141984315 141985282 + 0 NA intron (ENSMUSG00000039683.16, intron 14 of 44) protein_coding-intron (ENSMUSG00000039683.16, intron 10 of 40) -298308 ENSMUSG00000097947.1 ENSMUSG00000097947 ENSMUST00000182990 Gm26970 processed_pseudogene Interval_414 chr1 5062268 5062567 + 0 NA promoter-TSS (ENSMUSG00000091665.1) processed_pseudogene-promoter-TSS (ENSMUSG00000091665.1) -643 ENSMUSG00000091665.1 ENSMUSG00000091665 ENSMUST00000169520 Gm17101 processed_pseudogene Interval_153190 chr7 142257926 142258146 + 0 NA exon (ENSMUSG00000090455.2, exon 2 of 2) unprocessed_pseudogene-exon (ENSMUSG00000090455.2, exon 2 of 2) 318 ENSMUSG00000090455.2 ENSMUSG00000090455 ENSMUST00000171531 Gm2431 unprocessed_pseudogene Interval_128603 chr5 114251745 114251989 + 0 NA Intergenic Intergenic -13942 ENSMUSG00000084243.1 ENSMUSG00000084243 ENSMUST00000119639 Gm13784 processed_pseudogene Interval_117992 chr4 127517974 127518225 + 0 NA intron (ENSMUSG00000087470.2, intron 2 of 4) lincRNA-intron (ENSMUSG00000087470.2, intron 2 of 5) 43197 ENSMUSG00000087470.2 ENSMUSG00000087470 ENSMUST00000146587 A630031M04Rik lincRNA Interval_50159 chr14 8348538 8349222 + 0 NA TTS (ENSMUSG00000021749.6) protein_coding-TTS (ENSMUSG00000021749.6) -18560 ENSMUSG00000114532.1 ENSMUSG00000114532 ENSMUST00000225127 2610318M16Rik antisense Interval_4964 chr1 83003966 83004233 + 0 NA exon (ENSMUSG00000101784.1, exon 1 of 1) processed_pseudogene-exon (ENSMUSG00000101784.1, exon 1 of 1) 808 ENSMUSG00000101784.1 ENSMUSG00000101784 ENSMUST00000185805 Gm7553 processed_pseudogene Interval_41972 chr13 5797028 5797220 + 0 NA Intergenic Intergenic 24734 ENSMUSG00000080562.2 ENSMUSG00000080562 ENSMUST00000116912 Gm26043 miRNA Interval_170857 chr9 111264499 111264994 + 0 NA intron (ENSMUSG00000032498.9, intron 3 of 17) protein_coding-intron (ENSMUSG00000032498.9, intron 3 of 18) -9356 ENSMUSG00000046785.8 ENSMUSG00000046785 ENSMUST00000200053 Epm2aip1 protein_coding Interval_45087 chr13 52021086 52021693 + 0 NA exon (ENSMUSG00000102173.1, exon 2 of 3) TEC-exon (ENSMUSG00000102173.1, exon 2 of 3) 538 ENSMUSG00000102173.1 ENSMUSG00000102173 ENSMUST00000192362 Gm37872 TEC Interval_66963 chr16 38836058 38836714 + 0 NA intron (ENSMUSG00000086175.2, intron 2 of 5) antisense-intron (ENSMUSG00000086175.2, intron 2 of 5) 7480 ENSMUSG00000086175.2 ENSMUSG00000086175 ENSMUST00000148657 Gm15802 antisense Interval_32630 chr11 109297706 109298519 + 0 NA promoter-TSS (ENSMUSG00000020599.13) protein_coding-promoter-TSS (ENSMUSG00000020599.13) -48727 ENSMUSG00000099630.1 ENSMUSG00000099630 ENSMUST00000190043 1700096J18Rik lincRNA Interval_95925 chr2 118478538 118480187 + 0 NA promoter-TSS (ENSMUSG00000009549.14) protein_coding-promoter-TSS (ENSMUSG00000009549.14) -479 ENSMUSG00000009549.14 ENSMUSG00000009549 ENSMUST00000110862 Srp14 protein_coding Interval_174440 chrX 152305711 152306908 + 0 NA intron (ENSMUSG00000087403.9, intron 2 of 2) protein_coding-intron (ENSMUSG00000087403.9, intron 2 of 2) 2308 ENSMUSG00000084584.1 ENSMUSG00000084584 ENSMUST00000122635 n-R5s15 rRNA Interval_124651 chr5 52844319 52844818 + 0 NA intron (ENSMUSG00000029176.13, intron 2 of 6) protein_coding-intron (ENSMUSG00000029176.13, intron 8 of 27) -10779 ENSMUSG00000029176.13 ENSMUSG00000029176 ENSMUST00000138629 Anapc4 protein_coding Interval_31382 chr11 100355139 100357026 + 0 NA promoter-TSS (ENSMUSG00000006930.15) protein_coding-promoter-TSS (ENSMUSG00000006930.15) -4177 ENSMUSG00000006930.15 ENSMUSG00000006930 ENSMUST00000146878 Hap1 protein_coding Interval_26214 chr11 55157259 55157510 + 0 NA Intergenic Intergenic -5698 ENSMUSG00000049491.15 ENSMUSG00000049491 ENSMUST00000069816 Slc36a3 protein_coding Interval_121658 chr5 4600984 4601747 + 0 NA Intergenic Intergenic 156670 ENSMUSG00000044674.6 ENSMUSG00000044674 ENSMUST00000054294 Fzd1 protein_coding Interval_9308 chr1 156073145 156073711 + 0 NA Intergenic Intergenic 37656 ENSMUSG00000050565.16 ENSMUSG00000050565 ENSMUST00000125371 Tor1aip2 protein_coding Interval_74403 chr17 49951158 49952356 + 0 NA Intergenic Intergenic -21070 ENSMUSG00000118535.1 ENSMUSG00000118535 ENSMUST00000239097 AC133946.1 unitary_pseudogene Interval_11518 chr1 182388643 182389179 + 0 NA Intergenic Intergenic 4624 ENSMUSG00000097260.1 ENSMUSG00000097260 ENSMUST00000181525 Gm5706 processed_pseudogene Interval_67821 chr16 57443870 57444979 + 0 NA TTS (ENSMUSG00000022748.8) protein_coding-TTS (ENSMUSG00000022748.8) 91331 ENSMUSG00000043336.14 ENSMUSG00000043336 ENSMUST00000159414 Filip1l protein_coding Interval_96038 chr2 119344759 119345144 + 0 NA Intergenic Intergenic -6278 ENSMUSG00000027313.3 ENSMUSG00000027313 ENSMUST00000028780 Chac1 protein_coding Interval_116948 chr4 118381144 118381435 + 0 NA intron (ENSMUSG00000033253.18, intron 41 of 71) protein_coding-intron (ENSMUSG00000033253.18, intron 41 of 71) -7015 ENSMUSG00000033253.18 ENSMUSG00000033253 ENSMUST00000136737 Szt2 protein_coding Interval_124212 chr5 41368986 41369197 + 0 NA Intergenic Intergenic 26968 ENSMUSG00000106895.1 ENSMUSG00000106895 ENSMUST00000201337 Gm4754 processed_pseudogene Interval_132312 chr5 144099896 144100945 + 0 NA promoter-TSS (ENSMUSG00000038970.7) protein_coding-promoter-TSS (ENSMUSG00000038970.7) -16 ENSMUSG00000038970.7 ENSMUSG00000038970 ENSMUST00000041804 Lmtk2 protein_coding Interval_13037 chr10 9799357 9799561 + 0 NA intron (ENSMUSG00000019790.17, intron 17 of 25) protein_coding-intron (ENSMUSG00000019790.17, intron 17 of 27) 20126 ENSMUSG00000019790.17 ENSMUSG00000019790 ENSMUST00000219200 Stxbp5 protein_coding Interval_33372 chr11 116178399 116178650 + 0 NA intron (ENSMUSG00000020777.16, intron 4 of 5) protein_coding-intron (ENSMUSG00000020777.16, intron 8 of 13) 2690 ENSMUSG00000020777.16 ENSMUSG00000020777 ENSMUST00000124684 Acox1 protein_coding Interval_133584 chr6 7189064 7189740 + 0 NA Intergenic Intergenic 4770 ENSMUSG00000098421.1 ENSMUSG00000098421 ENSMUST00000184890 Gm27190 processed_pseudogene Interval_101686 chr3 8949070 8949499 + 0 NA intron (ENSMUSG00000027506.15, intron 3 of 3) protein_coding-intron (ENSMUSG00000027506.15, intron 2 of 6) -25366 ENSMUSG00000040269.5 ENSMUSG00000040269 ENSMUST00000042148 Mrps28 protein_coding Interval_3190 chr1 54600314 54600958 + 0 NA Intergenic Intergenic 33933 ENSMUSG00000101130.1 ENSMUSG00000101130 ENSMUST00000185933 Gm19637 processed_pseudogene Interval_28545 chr11 76645706 76646432 + 0 NA Intergenic Intergenic -22511 ENSMUSG00000017631.19 ENSMUSG00000017631 ENSMUST00000137261 Abr protein_coding Interval_87673 chr19 54191721 54193584 + 0 NA Intergenic Intergenic -5739 ENSMUSG00000118324.1 ENSMUSG00000118324 ENSMUST00000237525 Gm50187 TEC Interval_119582 chr4 138496296 138497419 + 0 NA Intergenic Intergenic 42543 ENSMUSG00000046447.3 ENSMUSG00000046447 ENSMUST00000050918 Camk2n1 protein_coding Interval_4729 chr1 77945345 77945985 + 0 NA intron (ENSMUSG00000102052.1, intron 3 of 3) lincRNA-intron (ENSMUSG00000102052.1, intron 3 of 3) 26711 ENSMUSG00000102052.1 ENSMUSG00000102052 ENSMUST00000189245 Gm28387 lincRNA Interval_49508 chr13 112509404 112511741 + 0 NA TTS (ENSMUSG00000021756.12) protein_coding-TTS (ENSMUSG00000021756.12) 35526 ENSMUSG00000021756.12 ENSMUSG00000021756 ENSMUST00000184949 Il6st protein_coding Interval_66736 chr16 36821490 36822012 + 0 NA TTS (ENSMUSG00000022838.14) protein_coding-TTS (ENSMUSG00000022838.14) -6696 ENSMUSG00000022837.14 ENSMUSG00000022837 ENSMUST00000153373 Iqcb1 protein_coding Interval_38257 chr12 76694651 76696690 + 0 NA intron (ENSMUSG00000021061.15, intron 1 of 31) protein_coding-intron (ENSMUSG00000021061.15, intron 1 of 35) 3690 ENSMUSG00000088356.1 ENSMUSG00000088356 ENSMUST00000157731 Gm24010 misc_RNA Interval_101487 chr2 181853824 181854217 + 0 NA intron (ENSMUSG00000027589.14, intron 3 of 3) protein_coding-intron (ENSMUSG00000027589.14, intron 6 of 6) -10340 ENSMUSG00000038628.8 ENSMUSG00000038628 ENSMUST00000153214 Polr3k protein_coding Interval_55402 chr14 86748895 86749449 + 0 NA promoter-TSS (ENSMUSG00000022021.14) protein_coding-promoter-TSS (ENSMUSG00000022021.14) -41987 ENSMUSG00000115306.1 ENSMUSG00000115306 ENSMUST00000226731 Gm49159 TEC Interval_28260 chr11 74748729 74749865 + 0 NA Intergenic Intergenic -16927 ENSMUSG00000081252.1 ENSMUSG00000081252 ENSMUST00000118534 Gm16032 processed_pseudogene Interval_161069 chr8 117292061 117292431 + 0 NA intron (ENSMUSG00000034390.16, intron 1 of 10) protein_coding-intron (ENSMUSG00000034390.16, intron 1 of 20) -131170 ENSMUSG00000034390.16 ENSMUSG00000034390 ENSMUST00000212884 Cmip protein_coding Interval_86279 chr19 38347968 38349179 + 0 NA Intergenic Intergenic -5959 ENSMUSG00000118381.1 ENSMUSG00000118381 ENSMUST00000237671 Gm50150 processed_pseudogene Interval_162687 chr9 7816156 7816945 + 0 NA Intergenic Intergenic 20255 ENSMUSG00000057367.12 ENSMUSG00000057367 ENSMUST00000054878 Birc2 protein_coding Interval_43534 chr13 32850511 32852281 + 0 NA promoter-TSS (ENSMUSG00000044734.16) protein_coding-promoter-TSS (ENSMUSG00000044734.16) -5606 ENSMUSG00000044734.16 ENSMUSG00000044734 ENSMUST00000221967 Serpinb1a protein_coding Interval_102117 chr3 17913438 17914275 + 0 NA Intergenic Intergenic -9852 ENSMUSG00000105262.1 ENSMUSG00000105262 ENSMUST00000199895 Gm19175 processed_pseudogene Interval_16810 chr10 68276354 68278001 + 0 NA intron (ENSMUSG00000019947.10, intron 2 of 9) protein_coding-intron (ENSMUSG00000019947.10, intron 2 of 10) 1563 ENSMUSG00000019947.10 ENSMUSG00000019947 ENSMUST00000218425 Arid5b protein_coding Interval_33369 chr11 116156955 116157486 + 0 NA intron (ENSMUSG00000020776.18, intron 2 of 5) protein_coding-intron (ENSMUSG00000020776.18, intron 8 of 29) 270 ENSMUSG00000020776.18 ENSMUSG00000020776 ENSMUST00000136073 Fbf1 protein_coding Interval_43949 chr13 38255828 38256252 + 0 NA Intergenic Intergenic 14569 ENSMUSG00000114799.1 ENSMUSG00000114799 ENSMUST00000224243 Gm47978 processed_pseudogene Interval_107569 chr3 108536438 108537707 + 0 NA promoter-TSS (ENSMUSG00000027886.7) protein_coding-promoter-TSS (ENSMUSG00000027886.7) -550 ENSMUSG00000040412.17 ENSMUSG00000040412 ENSMUST00000148237 5330417C22Rik protein_coding Interval_66179 chr16 32164880 32166027 + 0 NA promoter-TSS (ENSMUSG00000052384.14) protein_coding-promoter-TSS (ENSMUSG00000052384.14) 23 ENSMUSG00000052384.14 ENSMUSG00000052384 ENSMUST00000136809 Nrros protein_coding Interval_140923 chr6 122769927 122771611 + 0 NA intron (ENSMUSG00000003153.10, intron 2 of 4) protein_coding-intron (ENSMUSG00000003153.10, intron 2 of 4) 9188 ENSMUSG00000003153.10 ENSMUSG00000003153 ENSMUST00000168801 Slc2a3 protein_coding Interval_54080 chr14 65070966 65071537 + 0 NA intron (ENSMUSG00000021978.9, intron 3 of 6) protein_coding-intron (ENSMUSG00000021978.9, intron 3 of 6) 26854 ENSMUSG00000021978.9 ENSMUSG00000021978 ENSMUST00000223989 Extl3 protein_coding Interval_42930 chr13 21462430 21463310 + 0 NA Intergenic Intergenic 5639 ENSMUSG00000059395.4 ENSMUSG00000059395 ENSMUST00000068235 Nkapl protein_coding Interval_151248 chr7 120174781 120175243 + 0 NA intron (ENSMUSG00000030909.6, intron 1 of 1) protein_coding-intron (ENSMUSG00000030909.6, intron 1 of 1) 1154 ENSMUSG00000030909.6 ENSMUSG00000030909 ENSMUST00000033201 Anks4b protein_coding Interval_6422 chr1 107722831 107723182 + 0 NA Intergenic Intergenic 33702 ENSMUSG00000096241.1 ENSMUSG00000096241 ENSMUST00000179841 Gm24267 snRNA Interval_100013 chr2 166507829 166509276 + 0 NA promoter-TSS (ENSMUSG00000085682.2) transcribed_processed_pseudogene-promoter-TSS (ENSMUSG00000085682.2) 622 ENSMUSG00000085682.2 ENSMUSG00000085682 ENSMUST00000123480 Gm14267 transcribed_processed_pseudogene Interval_61644 chr15 83114890 83115902 + 0 NA promoter-TSS (ENSMUSG00000058586.12) protein_coding-promoter-TSS (ENSMUSG00000058586.12) 2950 ENSMUSG00000018040.9 ENSMUSG00000018040 ENSMUST00000167483 Rrp7a protein_coding Interval_82845 chr18 77417494 77417953 + 0 NA intron (ENSMUSG00000032818.16, intron 36 of 39) protein_coding-intron (ENSMUSG00000032818.16, intron 35 of 38) 49425 ENSMUSG00000025427.15 ENSMUSG00000025427 ENSMUST00000182146 Rnf165 protein_coding Interval_143795 chr7 16355044 16356446 + 0 NA intron (ENSMUSG00000052833.9, intron 6 of 8) protein_coding-intron (ENSMUSG00000052833.9, intron 6 of 8) 32061 ENSMUSG00000052833.9 ENSMUSG00000052833 ENSMUST00000209749 Sae1 protein_coding Interval_37237 chr12 62232900 62233392 + 0 NA Intergenic Intergenic -24703 ENSMUSG00000113395.1 ENSMUSG00000113395 ENSMUST00000220734 Gm48365 processed_pseudogene Interval_7013 chr1 122037284 122038048 + 0 NA Intergenic Intergenic -67142 ENSMUSG00000083584.1 ENSMUSG00000083584 ENSMUST00000119656 Gm15394 processed_pseudogene Interval_151281 chr7 120645280 120645532 + 0 NA TTS (ENSMUSG00000030884.12) protein_coding-TTS (ENSMUSG00000030884.12) 10143 ENSMUSG00000030884.12 ENSMUSG00000030884 ENSMUST00000131191 Uqcrc2 protein_coding Interval_127961 chr5 109865881 109867573 + 0 NA Intergenic Intergenic -19504 ENSMUSG00000097140.1 ENSMUSG00000097140 ENSMUST00000181101 Gm26779 lincRNA Interval_31720 chr11 102444991 102447959 + 0 NA intron (ENSMUSG00000034685.4, intron 1 of 3) protein_coding-intron (ENSMUSG00000034685.4, intron 1 of 7) 1119 ENSMUSG00000034685.4 ENSMUSG00000034685 ENSMUST00000152015 Fam171a2 protein_coding Interval_33659 chr11 117779900 117782153 + 0 NA promoter-TSS (ENSMUSG00000025572.17) protein_coding-promoter-TSS (ENSMUSG00000025572.17) 1172 ENSMUSG00000025572.17 ENSMUSG00000025572 ENSMUST00000127227 Tmc6 protein_coding Interval_148550 chr7 82366943 82367135 + 0 NA intron (ENSMUSG00000070469.12, intron 1 of 10) protein_coding-intron (ENSMUSG00000070469.12, intron 2 of 29) 24771 ENSMUSG00000109479.1 ENSMUSG00000109479 ENSMUST00000208587 Gm44919 TEC Interval_112902 chr4 45906070 45906279 + 0 NA intron (ENSMUSG00000035539.14, intron 12 of 37) protein_coding-intron (ENSMUSG00000035539.14, intron 11 of 12) 15871 ENSMUSG00000035539.14 ENSMUSG00000035539 ENSMUST00000151024 Ccdc180 protein_coding Interval_147680 chr7 71824071 71825310 + 0 NA Intergenic Intergenic -85003 ENSMUSG00000108669.1 ENSMUSG00000108669 ENSMUST00000205699 4930441H08Rik lincRNA Interval_106220 chr3 94742544 94743133 + 0 NA intron (ENSMUSG00000081355.1, intron 1 of 5) unprocessed_pseudogene-intron (ENSMUSG00000081355.1, intron 1 of 5) 5495 ENSMUSG00000104881.1 ENSMUSG00000104881 ENSMUST00000195994 Gm43711 processed_pseudogene Interval_117929 chr4 127149932 127150281 + 0 NA Intergenic Intergenic -8618 ENSMUSG00000082220.3 ENSMUSG00000082220 ENSMUST00000119616 Gm12943 processed_pseudogene Interval_147167 chr7 64011735 64012295 + 0 NA intron (ENSMUSG00000108393.1, intron 2 of 3) lincRNA-intron (ENSMUSG00000108393.1, intron 3 of 4) 4246 ENSMUSG00000108393.1 ENSMUSG00000108393 ENSMUST00000206557 Gm32633 lincRNA Interval_89208 chr2 18056174 18057884 + 0 NA promoter-TSS (ENSMUSG00000086340.1) processed_transcript-promoter-TSS (ENSMUSG00000086340.1) -416 ENSMUSG00000086340.1 ENSMUSG00000086340 ENSMUST00000125173 1810059C17Rik processed_transcript Interval_134148 chr6 21958535 21959511 + 0 NA intron (ENSMUSG00000029670.12, intron 4 of 10) protein_coding-intron (ENSMUSG00000029670.12, intron 4 of 11) 9338 ENSMUSG00000029670.12 ENSMUSG00000029670 ENSMUST00000141689 Ing3 protein_coding Interval_28189 chr11 73893898 73894888 + 0 NA Intergenic Intergenic 1375 ENSMUSG00000108707.1 ENSMUSG00000108707 ENSMUST00000206186 Gm44575 unprocessed_pseudogene Interval_112537 chr4 42964762 42965732 + 0 NA Intergenic Intergenic -4687 ENSMUSG00000028451.12 ENSMUSG00000028451 ENSMUST00000139127 1700022I11Rik protein_coding Interval_26828 chr11 60898240 60899848 + 0 NA Intergenic Intergenic 15706 ENSMUSG00000018931.3 ENSMUSG00000018931 ENSMUST00000143800 Natd1 protein_coding Interval_137868 chr6 83053517 83055339 + 0 NA promoter-TSS (ENSMUSG00000068328.9) protein_coding-promoter-TSS (ENSMUSG00000068328.9) -286 ENSMUSG00000068328.9 ENSMUSG00000068328 ENSMUST00000204752 Aup1 protein_coding Interval_54841 chr14 75761136 75761677 + 0 NA exon (ENSMUSG00000022003.7, exon 10 of 10) protein_coding-exon (ENSMUSG00000022003.7, exon 10 of 10) -15466 ENSMUSG00000089405.1 ENSMUSG00000089405 ENSMUST00000158780 Gm24876 rRNA Interval_57583 chr15 12585724 12586692 + 0 NA intron (ENSMUSG00000022197.16, intron 3 of 4) protein_coding-intron (ENSMUSG00000022197.16, intron 1 of 23) 11319 ENSMUSG00000078300.3 ENSMUSG00000078300 ENSMUST00000100754 Gm2606 processed_pseudogene Interval_101258 chr2 179916932 179917777 + 0 NA intron (ENSMUSG00000039117.16, intron 14 of 14) protein_coding-intron (ENSMUSG00000039117.16, intron 14 of 14) -58639 ENSMUSG00000085704.1 ENSMUSG00000085704 ENSMUST00000150145 4921531C22Rik processed_transcript Interval_160201 chr8 107104123 107104800 + 0 NA Intergenic Intergenic -8355 ENSMUSG00000098671.1 ENSMUSG00000098671 ENSMUST00000184187 Mir7075 miRNA Interval_47216 chr13 78181425 78181651 + 0 NA exon (ENSMUSG00000114649.1, exon 2 of 2) lincRNA-exon (ENSMUSG00000114649.1, exon 2 of 2) 1630 ENSMUSG00000114401.1 ENSMUSG00000114401 ENSMUST00000225211 Gm38604 antisense Interval_97682 chr2 142715195 142715398 + 0 NA intron (ENSMUSG00000038844.10, intron 17 of 26) protein_coding-intron (ENSMUSG00000038844.10, intron 17 of 25) -71600 ENSMUSG00000088134.1 ENSMUSG00000088134 ENSMUST00000157509 Gm22310 snoRNA Interval_94496 chr2 91672952 91673174 + 0 NA TTS (ENSMUSG00000027247.16) protein_coding-TTS (ENSMUSG00000027247.16) 12189 ENSMUSG00000027244.14 ENSMUSG00000027244 ENSMUST00000136412 Atg13 protein_coding Interval_58926 chr15 40107094 40107424 + 0 NA intron (ENSMUSG00000115142.1, intron 2 of 2) lincRNA-intron (ENSMUSG00000115142.1, intron 2 of 2) -27106 ENSMUSG00000094112.2 ENSMUSG00000094112 ENSMUST00000179120 9330182O14Rik protein_coding Interval_136738 chr6 58791641 58792481 + 0 NA Intergenic Intergenic -10124 ENSMUSG00000108164.1 ENSMUSG00000108164 ENSMUST00000203675 Gm43899 processed_pseudogene Interval_100766 chr2 172432580 172433284 + 0 NA TTS (ENSMUSG00000074570.14) protein_coding-TTS (ENSMUSG00000074570.14) 7628 ENSMUSG00000087633.1 ENSMUSG00000087633 ENSMUST00000138288 Gm14455 antisense Interval_60466 chr15 74004442 74004724 + 0 NA Intergenic Intergenic -3670 ENSMUSG00000116256.1 ENSMUSG00000116256 ENSMUST00000230277 Gm32405 lincRNA Interval_53370 chr14 56704009 56704429 + 0 NA Intergenic Intergenic -4858 ENSMUSG00000097743.1 ENSMUSG00000097743 ENSMUST00000180682 Gm16973 lincRNA Interval_95576 chr2 112441686 112442366 + 0 NA Intergenic Intergenic -12971 ENSMUSG00000055943.5 ENSMUSG00000055943 ENSMUST00000069747 Emc7 protein_coding Interval_48758 chr13 102850496 102851102 + 0 NA intron (ENSMUSG00000034751.17, intron 4 of 27) protein_coding-intron (ENSMUSG00000034751.17, intron 3 of 27) 88364 ENSMUSG00000090329.1 ENSMUSG00000090329 ENSMUST00000170645 Gm17160 antisense Interval_101486 chr2 181837424 181838941 + 0 NA intron (ENSMUSG00000027589.14, intron 1 of 6) protein_coding-intron (ENSMUSG00000027589.14, intron 1 of 6) -4272 ENSMUSG00000027589.14 ENSMUSG00000027589 ENSMUST00000137893 Pcmtd2 protein_coding Interval_45002 chr13 51368461 51369063 + 0 NA Intergenic Intergenic 23766 ENSMUSG00000113162.1 ENSMUSG00000113162 ENSMUST00000222986 Gm47554 processed_pseudogene Interval_4572 chr1 75179423 75180652 + 0 NA TTS (ENSMUSG00000033124.16) protein_coding-TTS (ENSMUSG00000033124.16) 5109 ENSMUSG00000099519.1 ENSMUSG00000099519 ENSMUST00000185727 Gm29253 processed_transcript Interval_91598 chr2 44358824 44359138 + 0 NA intron (ENSMUSG00000049744.15, intron 13 of 14) protein_coding-intron (ENSMUSG00000049744.15, intron 13 of 13) -69954 ENSMUSG00000088124.1 ENSMUSG00000088124 ENSMUST00000157499 Gm22867 snRNA Interval_106079 chr3 92682849 92683379 + 0 NA Intergenic Intergenic 3867 ENSMUSG00000042092.5 ENSMUSG00000042092 ENSMUST00000047055 Lce1c protein_coding Interval_99462 chr2 161498636 161499553 + 0 NA Intergenic Intergenic 14918 ENSMUSG00000100943.1 ENSMUSG00000100943 ENSMUST00000188874 Gm29229 processed_transcript Interval_28145 chr11 73159772 73161053 + 0 NA promoter-TSS (ENSMUSG00000005950.14) protein_coding-promoter-TSS (ENSMUSG00000005950.14) -173 ENSMUSG00000005950.14 ENSMUSG00000005950 ENSMUST00000136894 P2rx5 protein_coding Interval_50960 chr14 21136377 21137711 + 0 NA intron (ENSMUSG00000039197.10, intron 3 of 6) protein_coding-intron (ENSMUSG00000039197.10, intron 3 of 10) 84427 ENSMUSG00000039197.10 ENSMUSG00000039197 ENSMUST00000224974 Adk protein_coding Interval_68367 chr16 74511408 74512017 + 0 NA Intergenic Intergenic -94550 ENSMUSG00000116663.1 ENSMUSG00000116663 ENSMUST00000232134 Gm49671 processed_pseudogene Interval_53132 chr14 54631799 54632650 + 0 NA TTS (ENSMUSG00000059674.7) protein_coding-TTS (ENSMUSG00000059674.7) 5317 ENSMUSG00000059674.7 ENSMUSG00000059674 ENSMUST00000227124 Cdh24 protein_coding Interval_55331 chr14 83145856 83146197 + 0 NA Intergenic Intergenic 253189 ENSMUSG00000115031.1 ENSMUSG00000115031 ENSMUST00000228219 Gm49051 processed_pseudogene Interval_28229 chr11 74548424 74549527 + 0 NA intron (ENSMUSG00000038807.19, intron 3 of 25) protein_coding-intron (ENSMUSG00000038807.19, intron 3 of 25) 61940 ENSMUSG00000038807.19 ENSMUSG00000038807 ENSMUST00000145524 Rap1gap2 protein_coding Interval_166833 chr9 63099573 63099783 + 0 NA Intergenic Intergenic -16705 ENSMUSG00000111144.1 ENSMUSG00000111144 ENSMUST00000214934 Gm48193 lincRNA Interval_157274 chr8 68870429 68870619 + 0 NA Intergenic Intergenic -10031 ENSMUSG00000015568.16 ENSMUSG00000015568 ENSMUST00000169749 Lpl protein_coding Interval_35645 chr12 26553137 26553564 + 0 NA Intergenic Intergenic -43909 ENSMUSG00000113524.1 ENSMUSG00000113524 ENSMUST00000223018 Gm47847 lincRNA Interval_13330 chr10 15262965 15263971 + 0 NA Intergenic Intergenic -35420 ENSMUSG00000112177.1 ENSMUSG00000112177 ENSMUST00000219386 Gm18188 processed_pseudogene Interval_61895 chr15 85000832 85001845 + 0 NA Intergenic Intergenic -6801 ENSMUSG00000116343.1 ENSMUSG00000116343 ENSMUST00000230622 Gm6847 processed_pseudogene Interval_97480 chr2 137106271 137107732 + 0 NA intron (ENSMUSG00000027276.7, intron 2 of 25) protein_coding-intron (ENSMUSG00000027276.7, intron 2 of 25) -21052 ENSMUSG00000027276.7 ENSMUSG00000027276 ENSMUST00000133640 Jag1 protein_coding Interval_107257 chr3 105016243 105016657 + 0 NA intron (ENSMUSG00000062127.11, intron 3 of 4) protein_coding-intron (ENSMUSG00000062127.11, intron 3 of 5) 22418 ENSMUSG00000105355.1 ENSMUSG00000105355 ENSMUST00000198827 Gm40117 antisense Interval_11780 chr1 185379053 185379503 + 0 NA TTS (ENSMUSG00000026615.14) protein_coding-TTS (ENSMUSG00000026615.14) 11688 ENSMUSG00000026615.14 ENSMUSG00000026615 ENSMUST00000192049 Eprs protein_coding Interval_27993 chr11 72031929 72032377 + 0 NA intron (ENSMUSG00000040554.10, intron 2 of 5) protein_coding-intron (ENSMUSG00000040554.10, intron 2 of 5) 5356 ENSMUSG00000040554.10 ENSMUSG00000040554 ENSMUST00000059082 Aipl1 protein_coding Interval_63918 chr16 4566499 4567001 + 0 NA Intergenic Intergenic -7967 ENSMUSG00000005718.8 ENSMUSG00000005718 ENSMUST00000229956 Tfap4 protein_coding Interval_112811 chr4 45213374 45213919 + 0 NA intron (ENSMUSG00000035615.12, intron 1 of 15) protein_coding-intron (ENSMUSG00000035615.12, intron 1 of 15) 28771 ENSMUSG00000035615.12 ENSMUSG00000035615 ENSMUST00000107804 Frmpd1 protein_coding Interval_50421 chr14 12849954 12850751 + 0 NA Intergenic Intergenic -17201 ENSMUSG00000021741.4 ENSMUSG00000021741 ENSMUST00000022260 Gm5457 processed_pseudogene Interval_103583 chr3 50384249 50384552 + 0 NA intron (ENSMUSG00000027737.10, intron 6 of 11) protein_coding-intron (ENSMUSG00000027737.10, intron 6 of 11) 19883 ENSMUSG00000103907.1 ENSMUSG00000103907 ENSMUST00000193524 Gm37498 TEC Interval_95297 chr2 105908333 105908592 + 0 NA intron (ENSMUSG00000042670.5, intron 2 of 6) protein_coding-intron (ENSMUSG00000042670.5, intron 2 of 6) 3824 ENSMUSG00000042670.5 ENSMUSG00000042670 ENSMUST00000037499 Immp1l protein_coding Interval_153294 chr7 143400278 143401355 + 0 NA intron (ENSMUSG00000009545.14, intron 15 of 15) protein_coding-intron (ENSMUSG00000009545.14, intron 15 of 15) -36191 ENSMUSG00000101360.2 ENSMUSG00000101360 ENSMUST00000188294 4933417O13Rik antisense Interval_16820 chr10 68397221 68397482 + 0 NA Intergenic Intergenic -76209 ENSMUSG00000112157.1 ENSMUSG00000112157 ENSMUST00000218225 4930545H06Rik lincRNA Interval_62345 chr15 90678511 90680409 + 0 NA promoter-TSS (ENSMUSG00000052560.15) protein_coding-promoter-TSS (ENSMUSG00000052560.15) -84 ENSMUSG00000052560.15 ENSMUSG00000052560 ENSMUST00000154569 Cpne8 protein_coding Interval_5505 chr1 89368616 89369560 + 0 NA intron (ENSMUSG00000099938.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000099938.1, intron 1 of 2) -10944 ENSMUSG00000101288.1 ENSMUSG00000101288 ENSMUST00000190308 Gm28342 lincRNA Interval_57433 chr15 10750877 10751113 + 0 NA intron (ENSMUSG00000096971.2, intron 2 of 6) processed_transcript-intron (ENSMUSG00000096971.2, intron 2 of 6) 36095 ENSMUSG00000096971.2 ENSMUSG00000096971 ENSMUST00000181739 4930556M19Rik processed_transcript Interval_137592 chr6 74069169 74069589 + 0 NA Intergenic Intergenic -183530 ENSMUSG00000107646.1 ENSMUSG00000107646 ENSMUST00000203582 Gm44225 processed_pseudogene Interval_142080 chr6 136994966 136995267 + 0 NA Intergenic Intergenic 8520 ENSMUSG00000107734.1 ENSMUSG00000107734 ENSMUST00000203175 Gm30055 TEC Interval_68958 chr16 89693019 89693557 + 0 NA Intergenic Intergenic -59148 ENSMUSG00000116651.1 ENSMUSG00000116651 ENSMUST00000232201 Gm17844 processed_pseudogene Interval_55005 chr14 76816855 76817258 + 0 NA Intergenic Intergenic -15765 ENSMUSG00000115353.1 ENSMUSG00000115353 ENSMUST00000227572 Gm48968 lincRNA Interval_160938 chr8 115585030 115585233 + 0 NA promoter-TSS (ENSMUSG00000110592.1) lincRNA-promoter-TSS (ENSMUSG00000110592.1) -261 ENSMUSG00000110592.1 ENSMUSG00000110592 ENSMUST00000212830 4930488N15Rik lincRNA Interval_38223 chr12 76458186 76460387 + 0 NA Intergenic Intergenic 9588 ENSMUSG00000073000.3 ENSMUSG00000073000 ENSMUST00000220043 Gm10451 lincRNA Interval_16111 chr10 60798392 60799152 + 0 NA intron (ENSMUSG00000020099.8, intron 1 of 15) protein_coding-intron (ENSMUSG00000020099.8, intron 1 of 16) 15551 ENSMUSG00000112592.1 ENSMUSG00000112592 ENSMUST00000218180 Gm19972 TEC Interval_87551 chr19 53392928 53393260 + 0 NA Intergenic Intergenic 2305 ENSMUSG00000117768.1 ENSMUSG00000117768 ENSMUST00000238029 8030456M14Rik bidirectional_promoter_lncRNA Interval_74855 chr17 56883501 56886568 + 0 NA intron (ENSMUSG00000024209.9, intron 11 of 13) protein_coding-intron (ENSMUSG00000024209.9, intron 11 of 13) 9531 ENSMUSG00000024209.9 ENSMUSG00000024209 ENSMUST00000125425 Acsbg3 protein_coding Interval_136402 chr6 54133771 54134043 + 0 NA intron (ENSMUSG00000004633.17, intron 1 of 5) protein_coding-intron (ENSMUSG00000004633.17, intron 1 of 12) 17030 ENSMUSG00000087670.1 ENSMUSG00000087670 ENSMUST00000138767 9530036M11Rik antisense Interval_116461 chr4 113112959 113113340 + 0 NA intron (ENSMUSG00000087194.9, intron 12 of 47) protein_coding-intron (ENSMUSG00000087194.9, intron 13 of 48) -133336 ENSMUSG00000082678.1 ENSMUSG00000082678 ENSMUST00000117562 Gm12818 processed_pseudogene Interval_4059 chr1 66987367 66988491 + 0 NA Intergenic Intergenic 34289 ENSMUSG00000026000.16 ENSMUSG00000026000 ENSMUST00000189210 Lancl1 protein_coding Interval_8344 chr1 137579244 137580445 + 0 NA Intergenic Intergenic -48614 ENSMUSG00000103070.1 ENSMUSG00000103070 ENSMUST00000192122 Gm37903 TEC Interval_130626 chr5 129298767 129300476 + 0 NA Intergenic Intergenic -64499 ENSMUSG00000104681.1 ENSMUSG00000104681 ENSMUST00000199076 Gm43001 lincRNA Interval_3219 chr1 54973947 54974497 + 0 NA Intergenic Intergenic 53172 ENSMUSG00000025982.13 ENSMUSG00000025982 ENSMUST00000188419 Sf3b1 protein_coding Interval_113363 chr4 53843495 53843713 + 0 NA intron (ENSMUSG00000028420.13, intron 1 of 3) protein_coding-intron (ENSMUSG00000028420.13, intron 2 of 5) -17048 ENSMUSG00000065887.1 ENSMUSG00000065887 ENSMUST00000083953 n-R5s185 rRNA Interval_151021 chr7 117865639 117866087 + 0 NA Intergenic Intergenic 89069 ENSMUSG00000088116.1 ENSMUSG00000088116 ENSMUST00000157491 Gm24063 miRNA Interval_73755 chr17 43256409 43257250 + 0 NA Intergenic Intergenic -13500 ENSMUSG00000041293.5 ENSMUSG00000041293 ENSMUST00000047399 Adgrf1 protein_coding Interval_168619 chr9 84281544 84283899 + 0 NA Intergenic Intergenic 94366 ENSMUSG00000077666.1 ENSMUSG00000077666 ENSMUST00000104478 Gm26146 snRNA Interval_127183 chr5 100887208 100887464 + 0 NA TTS (ENSMUSG00000106178.1) TEC-TTS (ENSMUSG00000106178.1) 3203 ENSMUSG00000106178.1 ENSMUSG00000106178 ENSMUST00000197115 Gm42987 TEC Interval_92611 chr2 61475034 61475530 + 0 NA Intergenic Intergenic -17484 ENSMUSG00000088340.1 ENSMUSG00000088340 ENSMUST00000157715 Gm22338 snoRNA Interval_95259 chr2 105302246 105302454 + 0 NA intron (ENSMUSG00000055312.2, intron 2 of 2) protein_coding-intron (ENSMUSG00000055312.2, intron 3 of 3) 78008 ENSMUSG00000055312.2 ENSMUSG00000055312 ENSMUST00000131060 Them7 protein_coding Interval_30411 chr11 94202976 94203294 + 0 NA Intergenic Intergenic -8319 ENSMUSG00000037573.5 ENSMUSG00000037573 ENSMUST00000041589 Tob1 protein_coding Interval_14864 chr10 40604750 40605308 + 0 NA TTS (ENSMUSG00000019834.15) protein_coding-TTS (ENSMUSG00000019834.15) -25048 ENSMUSG00000063428.8 ENSMUSG00000063428 ENSMUST00000214618 Ddo protein_coding Interval_91799 chr2 49709436 49710455 + 0 NA intron (ENSMUSG00000026764.15, intron 2 of 6) protein_coding-intron (ENSMUSG00000026764.15, intron 10 of 25) -22666 ENSMUSG00000026764.15 ENSMUSG00000026764 ENSMUST00000132968 Kif5c protein_coding Interval_29622 chr11 85523942 85524758 + 0 NA intron (ENSMUSG00000059439.15, intron 6 of 14) protein_coding-intron (ENSMUSG00000059439.15, intron 15 of 24) 30591 ENSMUSG00000087779.1 ENSMUSG00000087779 ENSMUST00000157154 Gm23765 snRNA Interval_29194 chr11 81366889 81367118 + 0 NA intron (ENSMUSG00000020704.13, intron 1 of 9) protein_coding-intron (ENSMUSG00000020704.13, intron 1 of 9) -18010 ENSMUSG00000086971.1 ENSMUSG00000086971 ENSMUST00000141593 4930527B05Rik antisense Interval_86460 chr19 40722460 40723721 + 0 NA TTS (ENSMUSG00000048120.16) protein_coding-TTS (ENSMUSG00000048120.16) -25663 ENSMUSG00000108929.2 ENSMUSG00000108929 ENSMUST00000207791 Cc2d2b protein_coding Interval_14496 chr10 34349646 34350018 + 0 NA intron (ENSMUSG00000039480.14, intron 5 of 10) protein_coding-intron (ENSMUSG00000039480.14, intron 6 of 11) -40149 ENSMUSG00000039462.4 ENSMUSG00000039462 ENSMUST00000105511 Col10a1 protein_coding Interval_131680 chr5 139268261 139269216 + 0 NA intron (ENSMUSG00000025858.12, intron 2 of 2) protein_coding-intron (ENSMUSG00000025858.12, intron 8 of 8) 15241 ENSMUSG00000025858.12 ENSMUSG00000025858 ENSMUST00000124420 Get4 protein_coding Interval_15274 chr10 44005649 44006537 + 0 NA intron (ENSMUSG00000019866.15, intron 2 of 21) protein_coding-intron (ENSMUSG00000019866.15, intron 2 of 21) 1939 ENSMUSG00000075162.3 ENSMUSG00000075162 ENSMUST00000099864 Gm10812 pseudogene Interval_111246 chr4 15912594 15913840 + 0 NA Intergenic Intergenic -1583 ENSMUSG00000088055.1 ENSMUSG00000088055 ENSMUST00000157430 Gm26148 snoRNA Interval_19215 chr10 95551897 95552667 + 0 NA intron (ENSMUSG00000020029.6, intron 2 of 4) protein_coding-intron (ENSMUSG00000020029.6, intron 2 of 4) 7039 ENSMUSG00000092867.1 ENSMUSG00000092867 ENSMUST00000175126 Mir3058 miRNA Interval_150111 chr7 106745103 106746376 + 0 NA Intergenic Intergenic -3296 ENSMUSG00000051591.4 ENSMUSG00000051591 ENSMUST00000050541 Olfr697 protein_coding Interval_156454 chr8 48395283 48395488 + 0 NA TTS (ENSMUSG00000031561.16) protein_coding-TTS (ENSMUSG00000031561.16) -124400 ENSMUSG00000110480.1 ENSMUSG00000110480 ENSMUST00000212653 Gm32842 processed_pseudogene Interval_60688 chr15 76173687 76175141 + 0 NA TTS (ENSMUSG00000022565.15) protein_coding-TTS (ENSMUSG00000022565.15) 24046 ENSMUSG00000116475.1 ENSMUSG00000116475 ENSMUST00000229700 Gm19945 processed_pseudogene Interval_90507 chr2 30860324 30860925 + 0 NA intron (ENSMUSG00000039476.13, intron 1 of 1) protein_coding-intron (ENSMUSG00000039476.13, intron 1 of 3) 15180 ENSMUSG00000039476.13 ENSMUSG00000039476 ENSMUST00000137924 Prrx2 protein_coding Interval_58640 chr15 36750197 36751615 + 0 NA Intergenic Intergenic 27259 ENSMUSG00000115103.1 ENSMUSG00000115103 ENSMUST00000226969 Gm49263 lincRNA Interval_103372 chr3 40956906 40957339 + 0 NA intron (ENSMUSG00000025762.16, intron 1 of 2) protein_coding-intron (ENSMUSG00000025762.16, intron 1 of 9) 6304 ENSMUSG00000025762.16 ENSMUSG00000025762 ENSMUST00000199797 Larp1b protein_coding Interval_21250 chr10 127466645 127467388 + 0 NA intron (ENSMUSG00000025404.15, intron 11 of 23) protein_coding-intron (ENSMUSG00000025404.15, intron 11 of 23) 7481 ENSMUSG00000025404.15 ENSMUSG00000025404 ENSMUST00000171426 R3hdm2 protein_coding Interval_26390 chr11 57573653 57574426 + 0 NA intron (ENSMUSG00000086028.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000086028.1, intron 1 of 1) 1527 ENSMUSG00000086028.1 ENSMUSG00000086028 ENSMUST00000128521 Gm12243 lincRNA Interval_84103 chr19 7226457 7226968 + 0 NA TTS (ENSMUSG00000024764.10) protein_coding-TTS (ENSMUSG00000024764.10) -9169 ENSMUSG00000035885.5 ENSMUSG00000035885 ENSMUST00000237087 Cox8a protein_coding Interval_112459 chr4 41368532 41369283 + 0 NA intron (ENSMUSG00000028437.14, intron 2 of 5) protein_coding-intron (ENSMUSG00000028437.14, intron 2 of 6) -2341 ENSMUSG00000028437.14 ENSMUSG00000028437 ENSMUST00000132235 Ubap1 protein_coding Interval_144426 chr7 25086406 25087684 + 0 NA TTS (ENSMUSG00000008496.19) protein_coding-TTS (ENSMUSG00000008496.19) 10130 ENSMUSG00000098441.1 ENSMUSG00000098441 ENSMUST00000184150 Mir6537 miRNA Interval_38809 chr12 82497891 82498511 + 0 NA Intergenic Intergenic -1664 ENSMUSG00000094374.2 ENSMUSG00000094374 ENSMUST00000179295 Gm5435 processed_pseudogene Interval_101440 chr2 181410815 181411531 + 0 NA exon (ENSMUSG00000027583.13, exon 3 of 3) protein_coding-exon (ENSMUSG00000027583.13, exon 3 of 3) 13215 ENSMUSG00000027583.13 ENSMUSG00000027583 ENSMUST00000155535 Zbtb46 protein_coding Interval_67563 chr16 50832908 50833171 + 0 NA Intergenic Intergenic 49561 ENSMUSG00000092276.2 ENSMUSG00000092276 ENSMUST00000174511 1700116B05Rik lincRNA Interval_43703 chr13 35395319 35396404 + 0 NA intron (ENSMUSG00000114838.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000114838.1, intron 1 of 1) 478 ENSMUSG00000114838.1 ENSMUSG00000114838 ENSMUST00000226101 Gm48703 lincRNA Interval_107573 chr3 108561966 108563605 + 0 NA promoter-TSS (ENSMUSG00000068732.5) protein_coding-promoter-TSS (ENSMUSG00000068732.5) -615 ENSMUSG00000068732.5 ENSMUSG00000068732 ENSMUST00000090546 Tmem167b protein_coding Interval_14581 chr10 36546858 36548376 + 0 NA intron (ENSMUSG00000044499.11, intron 1 of 2) protein_coding-intron (ENSMUSG00000044499.11, intron 1 of 5) 40728 ENSMUSG00000044499.11 ENSMUSG00000044499 ENSMUST00000171521 Hs3st5 protein_coding Interval_72505 chr17 30261666 30262667 + 0 NA intron (ENSMUSG00000062202.14, intron 1 of 2) protein_coding-intron (ENSMUSG00000062202.14, intron 9 of 11) -48913 ENSMUSG00000089222.1 ENSMUSG00000089222 ENSMUST00000158597 Gm25049 snRNA Interval_165507 chr9 48834698 48836892 + 0 NA exon (ENSMUSG00000066687.5, exon 1 of 7) protein_coding-exon (ENSMUSG00000066687.5, exon 1 of 7) 427 ENSMUSG00000066687.5 ENSMUSG00000066687 ENSMUST00000216150 Zbtb16 protein_coding Interval_47508 chr13 85982630 85982856 + 0 NA Intergenic Intergenic 62305 ENSMUSG00000064917.1 ENSMUSG00000064917 ENSMUST00000082983 Gm22574 TEC Interval_78546 chr18 14629554 14630505 + 0 NA intron (ENSMUSG00000037013.17, intron 3 of 3) protein_coding-intron (ENSMUSG00000037013.17, intron 10 of 10) 7377 ENSMUSG00000037013.17 ENSMUSG00000037013 ENSMUST00000234544 Ss18 protein_coding Interval_164408 chr9 36796474 36797711 + 0 NA promoter-TSS (ENSMUSG00000062762.17) protein_coding-promoter-TSS (ENSMUSG00000062762.17) -24 ENSMUSG00000062762.17 ENSMUSG00000062762 ENSMUST00000217339 Ei24 protein_coding Interval_162800 chr9 9223283 9223673 + 0 NA intron (ENSMUSG00000050730.17, intron 1 of 5) protein_coding-intron (ENSMUSG00000050730.17, intron 1 of 22) -12810 ENSMUSG00000085253.3 ENSMUSG00000085253 ENSMUST00000150263 Gm16833 antisense Interval_26651 chr11 59478045 59478242 + 0 NA Intergenic Intergenic -2378 ENSMUSG00000084145.3 ENSMUSG00000084145 ENSMUST00000119105 Gm12263 processed_pseudogene Interval_107124 chr3 103733833 103735163 + 0 NA promoter-TSS (ENSMUSG00000027848.12) protein_coding-promoter-TSS (ENSMUSG00000027848.12) -1945 ENSMUSG00000027848.12 ENSMUSG00000027848 ENSMUST00000154145 Olfml3 protein_coding Interval_167119 chr9 65460654 65461619 + 0 NA TTS (ENSMUSG00000111722.1) lincRNA-TTS (ENSMUSG00000111722.1) 7521 ENSMUSG00000111722.1 ENSMUSG00000111722 ENSMUST00000214308 Gm47270 lincRNA Interval_80010 chr18 36613132 36613344 + 0 NA promoter-TSS (ENSMUSG00000024483.19) protein_coding-promoter-TSS (ENSMUSG00000024483.19) -1074 ENSMUSG00000024483.19 ENSMUSG00000024483 ENSMUST00000116653 Ankhd1 protein_coding Interval_139085 chr6 94914921 94915145 + 0 NA Intergenic Intergenic -28801 ENSMUSG00000108187.1 ENSMUSG00000108187 ENSMUST00000203778 4930511E03Rik lincRNA Interval_26303 chr11 55949628 55949849 + 0 NA intron (ENSMUSG00000086020.1, intron 1 of 4) antisense-intron (ENSMUSG00000086020.1, intron 1 of 4) 91272 ENSMUSG00000037393.2 ENSMUSG00000037393 ENSMUST00000037682 Nmur2 protein_coding Interval_113100 chr4 48225015 48225625 + 0 NA intron (ENSMUSG00000028343.10, intron 4 of 11) protein_coding-intron (ENSMUSG00000028343.10, intron 4 of 11) -12105 ENSMUSG00000087844.1 ENSMUSG00000087844 ENSMUST00000157219 Mir1958 miRNA Interval_152817 chr7 138285707 138286048 + 0 NA intron (ENSMUSG00000091002.2, intron 4 of 6) protein_coding-intron (ENSMUSG00000091002.2, intron 4 of 11) 111853 ENSMUSG00000091002.2 ENSMUSG00000091002 ENSMUST00000162222 Tcerg1l protein_coding Interval_133977 chr6 17227500 17228024 + 0 NA intron (ENSMUSG00000085264.1, intron 1 of 4) antisense-intron (ENSMUSG00000085264.1, intron 1 of 4) 29655 ENSMUSG00000085171.7 ENSMUSG00000085171 ENSMUST00000124434 D830026I12Rik lincRNA Interval_158831 chr8 86926201 86926751 + 0 NA Intergenic Intergenic -5329 ENSMUSG00000099162.1 ENSMUSG00000099162 ENSMUST00000183394 Gm27168 lincRNA Interval_155449 chr8 33652933 33654815 + 0 NA intron (ENSMUSG00000031584.16, intron 1 of 12) protein_coding-intron (ENSMUSG00000031584.16, intron 1 of 12) 1351 ENSMUSG00000031584.16 ENSMUSG00000031584 ENSMUST00000149528 Gsr protein_coding Interval_171475 chr9 118631945 118632404 + 0 NA intron (ENSMUSG00000039115.13, intron 3 of 27) protein_coding-intron (ENSMUSG00000039115.13, intron 3 of 27) -41979 ENSMUSG00000110676.1 ENSMUSG00000110676 ENSMUST00000212679 Gm45897 lincRNA Interval_140452 chr6 118323032 118323827 + 0 NA Intergenic Intergenic -15045 ENSMUSG00000107933.1 ENSMUSG00000107933 ENSMUST00000204033 Gm30498 lincRNA Interval_73398 chr17 36981142 36983271 + 0 NA promoter-TSS (ENSMUSG00000064308.10) protein_coding-promoter-TSS (ENSMUSG00000064308.10) -989 ENSMUSG00000064308.10 ENSMUSG00000064308 ENSMUST00000173707 2410137M14Rik protein_coding Interval_75200 chr17 64620131 64620941 + 0 NA intron (ENSMUSG00000024085.13, intron 1 of 21) protein_coding-intron (ENSMUSG00000024085.13, intron 1 of 21) -64876 ENSMUSG00000073377.9 ENSMUSG00000073377 ENSMUST00000168379 AU016765 lincRNA Interval_21955 chr11 5413686 5413898 + 0 NA intron (ENSMUSG00000041961.14, intron 1 of 3) protein_coding-intron (ENSMUSG00000041961.14, intron 1 of 8) -32052 ENSMUSG00000041961.14 ENSMUSG00000041961 ENSMUST00000143746 Znrf3 protein_coding Interval_129053 chr5 117108038 117108586 + 0 NA intron (ENSMUSG00000066900.11, intron 2 of 3) protein_coding-intron (ENSMUSG00000066900.11, intron 4 of 11) -3911 ENSMUSG00000066900.11 ENSMUSG00000066900 ENSMUST00000201287 Suds3 protein_coding Interval_35549 chr12 24734505 24734731 + 0 NA Intergenic Intergenic 25589 ENSMUSG00000020649.11 ENSMUSG00000020649 ENSMUST00000154588 Rrm2 protein_coding Interval_56896 chr14 122933312 122933615 + 0 NA exon (ENSMUSG00000041594.18, exon 11 of 17) protein_coding-exon (ENSMUSG00000041594.18, exon 11 of 17) -11541 ENSMUSG00000041594.18 ENSMUSG00000041594 ENSMUST00000141478 Tmtc4 protein_coding Interval_144788 chr7 28262699 28264115 + 0 NA Intergenic Intergenic -4474 ENSMUSG00000046058.7 ENSMUSG00000046058 ENSMUST00000059596 Eid2 protein_coding Interval_25755 chr11 51518045 51518298 + 0 NA intron (ENSMUSG00000063564.13, intron 3 of 28) protein_coding-intron (ENSMUSG00000063564.13, intron 3 of 28) -56261 ENSMUSG00000063564.13 ENSMUSG00000063564 ENSMUST00000151098 Col23a1 protein_coding Interval_106418 chr3 96082998 96083412 + 0 NA Intergenic Intergenic -3666 ENSMUSG00000105995.1 ENSMUSG00000105995 ENSMUST00000199987 Gm43554 processed_pseudogene Interval_132539 chr5 146044121 146044328 + 0 NA Intergenic Intergenic -16334 ENSMUSG00000104636.1 ENSMUSG00000104636 ENSMUST00000200131 Gm43239 processed_pseudogene Interval_107551 chr3 108444217 108445808 + 0 NA exon (ENSMUSG00000068739.13, exon 1 of 11) protein_coding-exon (ENSMUSG00000068739.13, exon 1 of 11) 144 ENSMUSG00000068739.13 ENSMUSG00000068739 ENSMUST00000197647 Sars protein_coding Interval_73533 chr17 39746035 39746262 + 0 NA Intergenic Intergenic 65874 ENSMUSG00000117319.1 ENSMUSG00000117319 ENSMUST00000233822 Gm49833 unprocessed_pseudogene Interval_70086 chr17 5208239 5208821 + 0 NA intron (ENSMUSG00000069729.14, intron 4 of 19) protein_coding-intron (ENSMUSG00000069729.14, intron 4 of 18) -96420 ENSMUSG00000081783.2 ENSMUSG00000081783 ENSMUST00000122283 Gm15599 processed_pseudogene Interval_39761 chr12 97600441 97600641 + 0 NA Intergenic Intergenic -35473 ENSMUSG00000112590.1 ENSMUSG00000112590 ENSMUST00000218781 Gm5186 processed_pseudogene Interval_166095 chr9 56580043 56580384 + 0 NA Intergenic Intergenic -26480 ENSMUSG00000097870.2 ENSMUSG00000097870 ENSMUST00000181927 Gm26868 lincRNA Interval_128794 chr5 115294075 115294407 + 0 NA intron (ENSMUSG00000041733.10, intron 3 of 4) protein_coding-intron (ENSMUSG00000041733.10, intron 4 of 6) -2341 ENSMUSG00000082610.1 ENSMUSG00000082610 ENSMUST00000119600 Gm13829 processed_pseudogene Interval_159822 chr8 104091251 104091868 + 0 NA intron (ENSMUSG00000110053.1, intron 1 of 2) antisense-intron (ENSMUSG00000110053.1, intron 1 of 2) 14314 ENSMUSG00000110053.1 ENSMUSG00000110053 ENSMUST00000210896 Gm29682 antisense Interval_129206 chr5 118188740 118190825 + 0 NA TTS (ENSMUSG00000046607.6) protein_coding-TTS (ENSMUSG00000046607.6) 21560 ENSMUSG00000089248.1 ENSMUSG00000089248 ENSMUST00000158623 Gm24050 misc_RNA Interval_137082 chr6 67226147 67226397 + 0 NA intron (ENSMUSG00000107799.1, intron 1 of 2) antisense-intron (ENSMUSG00000107799.1, intron 1 of 2) -3728 ENSMUSG00000108013.1 ENSMUSG00000108013 ENSMUST00000203382 Gm44052 processed_pseudogene Interval_147865 chr7 74481339 74481623 + 0 NA intron (ENSMUSG00000025790.14, intron 1 of 1) protein_coding-intron (ENSMUSG00000025790.14, intron 2 of 9) 88783 ENSMUSG00000085161.1 ENSMUSG00000085161 ENSMUST00000132826 Gm7580 antisense Interval_166637 chr9 61468463 61469277 + 0 NA Intergenic Intergenic 4116 ENSMUSG00000111635.1 ENSMUSG00000111635 ENSMUST00000217096 Gm47240 processed_pseudogene Interval_3917 chr1 64761234 64761790 + 0 NA Intergenic Intergenic -23763 ENSMUSG00000045005.9 ENSMUSG00000045005 ENSMUST00000116133 Fzd5 protein_coding Interval_35825 chr12 30659484 30659695 + 0 NA Intergenic Intergenic 72675 ENSMUSG00000043061.10 ENSMUSG00000043061 ENSMUST00000218826 Tmem18 protein_coding Interval_87889 chr19 56908061 56909057 + 0 NA intron (ENSMUSG00000025082.8, intron 11 of 13) protein_coding-intron (ENSMUSG00000025082.8, intron 11 of 13) 28679 ENSMUSG00000025083.18 ENSMUSG00000025083 ENSMUST00000132851 Afap1l2 protein_coding Interval_158162 chr8 79354773 79355002 + 0 NA TTS (ENSMUSG00000031681.16) protein_coding-TTS (ENSMUSG00000031681.16) 1791 ENSMUSG00000031681.16 ENSMUSG00000031681 ENSMUST00000066081 Smad1 protein_coding Interval_111456 chr4 21770596 21771330 + 0 NA intron (ENSMUSG00000040455.17, intron 1 of 3) protein_coding-intron (ENSMUSG00000040455.17, intron 1 of 3) -3751 ENSMUSG00000028251.5 ENSMUSG00000028251 ENSMUST00000029915 Tstd3 protein_coding Interval_98401 chr2 152089250 152089853 + 0 NA intron (ENSMUSG00000060257.2, intron 1 of 1) protein_coding-intron (ENSMUSG00000060257.2, intron 1 of 1) 8022 ENSMUSG00000060257.2 ENSMUSG00000060257 ENSMUST00000064061 Scrt2 protein_coding Interval_5854 chr1 92641360 92642445 + 0 NA promoter-TSS (ENSMUSG00000073616.10) protein_coding-promoter-TSS (ENSMUSG00000073616.10) -1993 ENSMUSG00000073616.10 ENSMUSG00000073616 ENSMUST00000129730 Cops9 protein_coding Interval_146997 chr7 57538340 57539107 + 0 NA intron (ENSMUSG00000033676.13, intron 1 of 9) protein_coding-intron (ENSMUSG00000033676.13, intron 1 of 9) -28664 ENSMUSG00000055078.7 ENSMUSG00000055078 ENSMUST00000206734 Gabra5 protein_coding Interval_37480 chr12 69241528 69242492 + 0 NA promoter-TSS (ENSMUSG00000051890.13) protein_coding-promoter-TSS (ENSMUSG00000051890.13) 92 ENSMUSG00000051890.13 ENSMUSG00000051890 ENSMUST00000173419 Klhdc1 protein_coding Interval_28725 chr11 77938162 77938386 + 0 NA intron (ENSMUSG00000000632.13, intron 1 of 15) protein_coding-intron (ENSMUSG00000000632.13, intron 1 of 15) 7235 ENSMUSG00000000632.13 ENSMUSG00000000632 ENSMUST00000126866 Sez6 protein_coding Interval_8402 chr1 138859060 138859758 + 0 NA Intergenic Intergenic -5059 ENSMUSG00000079283.2 ENSMUSG00000079283 ENSMUST00000193374 2310009B15Rik protein_coding Interval_35043 chr12 16834752 16834955 + 0 NA intron (ENSMUSG00000057469.8, intron 9 of 9) protein_coding-intron (ENSMUSG00000057469.8, intron 9 of 9) 14592 ENSMUSG00000057469.8 ENSMUSG00000057469 ENSMUST00000221600 E2f6 protein_coding Interval_169562 chr9 99146806 99148104 + 0 NA Intergenic Intergenic -7530 ENSMUSG00000032462.14 ENSMUSG00000032462 ENSMUST00000124723 Pik3cb protein_coding Interval_30349 chr11 93785609 93785975 + 0 NA Intergenic Intergenic 90351 ENSMUSG00000054079.12 ENSMUSG00000054079 ENSMUST00000134807 Utp18 protein_coding Interval_62154 chr15 88288437 88288909 + 0 NA intron (ENSMUSG00000115880.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000115880.1, intron 1 of 2) -26201 ENSMUSG00000116331.1 ENSMUSG00000116331 ENSMUST00000230919 B230214G05Rik lincRNA Interval_66734 chr16 36802556 36803121 + 0 NA intron (ENSMUSG00000022838.14, intron 2 of 3) protein_coding-intron (ENSMUSG00000022838.14, intron 4 of 5) 5867 ENSMUSG00000022838.14 ENSMUSG00000022838 ENSMUST00000134556 Eaf2 protein_coding Interval_46935 chr13 73545895 73547033 + 0 NA intron (ENSMUSG00000021609.6, intron 4 of 14) protein_coding-intron (ENSMUSG00000021609.6, intron 4 of 14) 9717 ENSMUSG00000021609.6 ENSMUSG00000021609 ENSMUST00000022100 Slc6a3 protein_coding Interval_6290 chr1 105505567 105505808 + 0 NA intron (ENSMUSG00000101214.1, intron 1 of 5) sense_overlapping-intron (ENSMUSG00000101214.1, intron 1 of 5) 49716 ENSMUSG00000067017.5 ENSMUSG00000067017 ENSMUST00000086725 Capza1-ps1 pseudogene Interval_3530 chr1 59384108 59384488 + 0 NA intron (ENSMUSG00000099922.1, intron 1 of 3) lincRNA-intron (ENSMUSG00000099922.1, intron 1 of 3) 5368 ENSMUSG00000099922.1 ENSMUSG00000099922 ENSMUST00000187523 Gm29016 lincRNA Interval_143849 chr7 16745988 16746482 + 0 NA promoter-TSS (ENSMUSG00000008036.11) protein_coding-promoter-TSS (ENSMUSG00000008036.11) 7697 ENSMUSG00000008036.11 ENSMUSG00000008036 ENSMUST00000141496 Ap2s1 protein_coding Interval_105886 chr3 89922482 89922723 + 0 NA Intergenic Intergenic -9406 ENSMUSG00000027947.11 ENSMUSG00000027947 ENSMUST00000029559 Il6ra protein_coding Interval_166653 chr9 61625874 61627606 + 0 NA Intergenic Intergenic 117017 ENSMUSG00000111381.1 ENSMUSG00000111381 ENSMUST00000213400 Gm34424 transcribed_processed_pseudogene Interval_57414 chr15 10659210 10659398 + 0 NA intron (ENSMUSG00000022246.14, intron 2 of 16) protein_coding-intron (ENSMUSG00000022246.14, intron 2 of 17) 54794 ENSMUSG00000022246.14 ENSMUSG00000022246 ENSMUST00000227366 Rai14 protein_coding Interval_29906 chr11 87674452 87674753 + 0 NA intron (ENSMUSG00000034177.15, intron 1 of 7) protein_coding-intron (ENSMUSG00000034177.15, intron 1 of 8) 11515 ENSMUSG00000034177.15 ENSMUSG00000034177 ENSMUST00000150866 Rnf43 protein_coding Interval_131931 chr5 140869206 140869696 + 0 NA Intergenic Intergenic -39294 ENSMUSG00000000149.10 ENSMUSG00000000149 ENSMUST00000198447 Gna12 protein_coding Interval_122231 chr5 20507505 20507747 + 0 NA intron (ENSMUSG00000040003.18, intron 6 of 15) protein_coding-intron (ENSMUSG00000040003.18, intron 10 of 22) -80970 ENSMUSG00000106240.1 ENSMUSG00000106240 ENSMUST00000196129 Gm3544 processed_pseudogene Interval_69010 chr16 90113452 90113981 + 0 NA intron (ENSMUSG00000002489.16, intron 1 of 11) protein_coding-intron (ENSMUSG00000002489.16, intron 1 of 11) 23733 ENSMUSG00000116536.1 ENSMUSG00000116536 ENSMUST00000232386 Gm2805 processed_pseudogene Interval_173755 chrX 103471458 103472848 + 0 NA intron (ENSMUSG00000086503.4, intron 1 of 6) lincRNA-intron (ENSMUSG00000086503.4, intron 1 of 6) -2357 ENSMUSG00000098743.1 ENSMUSG00000098743 ENSMUST00000183791 Gm27927 misc_RNA Interval_82234 chr18 69452592 69453405 + 0 NA intron (ENSMUSG00000053477.17, intron 1 of 17) protein_coding-intron (ENSMUSG00000053477.17, intron 4 of 20) -69452 ENSMUSG00000053477.17 ENSMUSG00000053477 ENSMUST00000136019 Tcf4 protein_coding Interval_64703 chr16 14345027 14346016 + 0 NA Intergenic Intergenic -12911 ENSMUSG00000116025.1 ENSMUSG00000116025 ENSMUST00000229451 Gm49517 processed_pseudogene Interval_127970 chr5 109963761 109964293 + 0 NA Intergenic Intergenic 23601 ENSMUSG00000090015.8 ENSMUSG00000090015 ENSMUST00000170826 Gm15446 protein_coding Interval_132714 chr5 147338676 147339789 + 0 NA intron (ENSMUSG00000042817.15, intron 20 of 23) protein_coding-intron (ENSMUSG00000042817.15, intron 20 of 23) -12898 ENSMUSG00000106939.1 ENSMUSG00000106939 ENSMUST00000201667 Gm29778 processed_pseudogene Interval_13732 chr10 21538507 21538903 + 0 NA Intergenic Intergenic -77615 ENSMUSG00000050844.5 ENSMUSG00000050844 ENSMUST00000186635 1700020N01Rik protein_coding Interval_76491 chr17 80568019 80568827 + 0 NA intron (ENSMUSG00000033966.8, intron 1 of 9) protein_coding-intron (ENSMUSG00000033966.8, intron 1 of 9) 9390 ENSMUSG00000033966.8 ENSMUSG00000033966 ENSMUST00000234349 Cdkl4 protein_coding Interval_142863 chr6 146542830 146543260 + 0 NA Intergenic Intergenic 34735 ENSMUSG00000040250.14 ENSMUSG00000040250 ENSMUST00000205078 Ints13 protein_coding Interval_124261 chr5 43097557 43097973 + 0 NA Intergenic Intergenic 38510 ENSMUSG00000105416.1 ENSMUSG00000105416 ENSMUST00000196390 Gm42553 TEC Interval_116071 chr4 107405973 107406209 + 0 NA intron (ENSMUSG00000028614.14, intron 15 of 16) protein_coding-intron (ENSMUSG00000028614.14, intron 15 of 16) 25006 ENSMUSG00000028614.14 ENSMUSG00000028614 ENSMUST00000132950 Ndc1 protein_coding Interval_162156 chr8 125554432 125554643 + 0 NA intron (ENSMUSG00000001995.9, intron 1 of 22) protein_coding-intron (ENSMUSG00000001995.9, intron 1 of 21) 15271 ENSMUSG00000001995.9 ENSMUSG00000001995 ENSMUST00000212604 Sipa1l2 protein_coding Interval_142633 chr6 144436262 144436549 + 0 NA intron (ENSMUSG00000041540.16, intron 3 of 6) protein_coding-intron (ENSMUSG00000041540.16, intron 3 of 13) -44820 ENSMUSG00000087157.1 ENSMUSG00000087157 ENSMUST00000156443 Sox5os2 antisense Interval_9355 chr1 156543854 156544080 + 0 NA Intergenic Intergenic 19955 ENSMUSG00000101523.2 ENSMUSG00000101523 ENSMUST00000190422 Csnk2a3 processed_pseudogene Interval_55255 chr14 79699469 79699764 + 0 NA intron (ENSMUSG00000115740.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000115740.1, intron 1 of 1) 2794 ENSMUSG00000115740.1 ENSMUSG00000115740 ENSMUST00000226962 Gm49042 lincRNA Interval_67710 chr16 56144750 56146449 + 0 NA intron (ENSMUSG00000052917.15, intron 7 of 23) protein_coding-intron (ENSMUSG00000052917.15, intron 6 of 22) 3963 ENSMUSG00000116826.1 ENSMUSG00000116826 ENSMUST00000231653 Gm49682 processed_pseudogene Interval_24132 chr11 30648582 30649648 + 0 NA intron (ENSMUSG00000060923.5, intron 1 of 3) protein_coding-intron (ENSMUSG00000060923.5, intron 1 of 3) 472 ENSMUSG00000060923.5 ENSMUSG00000060923 ENSMUST00000074613 Acyp2 protein_coding Interval_149537 chr7 99429645 99430802 + 0 NA intron (ENSMUSG00000035314.10, intron 1 of 15) protein_coding-intron (ENSMUSG00000035314.10, intron 4 of 17) 6110 ENSMUSG00000035314.10 ENSMUSG00000035314 ENSMUST00000208061 Gdpd5 protein_coding Interval_47570 chr13 89210349 89210590 + 0 NA intron (ENSMUSG00000034488.14, intron 9 of 10) protein_coding-intron (ENSMUSG00000034488.14, intron 8 of 9) 367950 ENSMUSG00000094463.2 ENSMUSG00000094463 ENSMUST00000178288 Gm8546 processed_pseudogene Interval_137075 chr6 67174875 67175864 + 0 NA Intergenic Intergenic -30250 ENSMUSG00000047905.10 ENSMUSG00000047905 ENSMUST00000120174 Gm8566 processed_pseudogene Interval_49956 chr13 118868759 118869157 + 0 NA Intergenic Intergenic -10544 ENSMUSG00000114868.1 ENSMUSG00000114868 ENSMUST00000224309 Gm47335 processed_pseudogene Interval_123297 chr5 31194903 31195414 + 0 NA promoter-TSS (ENSMUSG00000029146.14) protein_coding-promoter-TSS (ENSMUSG00000029146.14) 315 ENSMUSG00000029146.14 ENSMUSG00000029146 ENSMUST00000201343 Snx17 protein_coding Interval_83575 chr18 89977727 89977933 + 0 NA Intergenic Intergenic -33518 ENSMUSG00000098126.1 ENSMUSG00000098126 ENSMUST00000182270 Gm27037 processed_pseudogene Interval_172718 chrX 47900949 47901204 + 0 NA TTS (ENSMUSG00000068014.5) processed_pseudogene-TTS (ENSMUSG00000068014.5) 731 ENSMUSG00000068014.5 ENSMUSG00000068014 ENSMUST00000119328 Gm14648 processed_pseudogene Interval_38470 chr12 79247941 79249102 + 0 NA intron (ENSMUSG00000066440.5, intron 6 of 11) protein_coding-intron (ENSMUSG00000066440.5, intron 32 of 41) -4110 ENSMUSG00000066440.5 ENSMUSG00000066440 ENSMUST00000219571 Zfyve26 protein_coding Interval_97880 chr2 144714779 144716293 + 0 NA intron (ENSMUSG00000027430.12, intron 2 of 2) protein_coding-intron (ENSMUSG00000027430.12, intron 4 of 5) -40793 ENSMUSG00000084306.1 ENSMUSG00000084306 ENSMUST00000117385 Gm11743 processed_pseudogene Interval_50508 chr14 14381206 14381640 + 0 NA Intergenic Intergenic 9775 ENSMUSG00000114748.1 ENSMUSG00000114748 ENSMUST00000225926 Gm6734 processed_pseudogene Interval_147050 chr7 60008067 60008286 + 0 NA intron (ENSMUSG00000102252.5, intron 2 of 10) protein_coding-intron (ENSMUSG00000102252.5, intron 2 of 10) -3127 ENSMUSG00000102627.1 ENSMUSG00000102627 ENSMUST00000194059 Snurf protein_coding Interval_111679 chr4 25743416 25743888 + 0 NA intron (ENSMUSG00000055373.8, intron 1 of 2) protein_coding-intron (ENSMUSG00000055373.8, intron 1 of 2) 56203 ENSMUSG00000055373.8 ENSMUSG00000055373 ENSMUST00000149875 Fut9 protein_coding Interval_90924 chr2 33495761 33495961 + 0 NA intron (ENSMUSG00000086939.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000086939.1, intron 1 of 1) 6079 ENSMUSG00000086939.1 ENSMUSG00000086939 ENSMUST00000134014 Gm13530 lincRNA Interval_108143 chr3 121853575 121854511 + 0 NA Intergenic Intergenic -8799 ENSMUSG00000104595.1 ENSMUSG00000104595 ENSMUST00000198469 Gm42593 processed_pseudogene Interval_89126 chr2 16937722 16937924 + 0 NA Intergenic Intergenic 22195 ENSMUSG00000076950.1 ENSMUSG00000076950 ENSMUST00000103762 Gm24933 miRNA Interval_35681 chr12 27410582 27410923 + 0 NA Intergenic Intergenic -68178 ENSMUSG00000063632.6 ENSMUSG00000063632 ENSMUST00000079063 Sox11 protein_coding Interval_29350 chr11 83375954 83376865 + 0 NA intron (ENSMUSG00000035152.14, intron 17 of 20) protein_coding-intron (ENSMUSG00000035152.14, intron 18 of 21) -9408 ENSMUSG00000077217.1 ENSMUSG00000077217 ENSMUST00000104029 Gm23951 snoRNA Interval_171259 chr9 115709973 115711905 + 0 NA Intergenic Intergenic 30196 ENSMUSG00000110905.1 ENSMUSG00000110905 ENSMUST00000215982 Gm48007 lincRNA Interval_31543 chr11 101269794 101270296 + 0 NA intron (ENSMUSG00000035112.17, intron 5 of 5) protein_coding-intron (ENSMUSG00000035112.17, intron 11 of 18) -3742 ENSMUSG00000085083.1 ENSMUSG00000085083 ENSMUST00000156205 Gm11615 antisense Interval_140550 chr6 119448270 119450027 + 0 NA intron (ENSMUSG00000030170.14, intron 1 of 4) protein_coding-intron (ENSMUSG00000030170.14, intron 1 of 4) -30520 ENSMUSG00000030019.6 ENSMUSG00000030019 ENSMUST00000032094 Fbxl14 protein_coding Interval_103927 chr3 55054499 55055816 + 0 NA promoter-TSS (ENSMUSG00000027793.6) protein_coding-promoter-TSS (ENSMUSG00000027793.6) -85 ENSMUSG00000106589.1 ENSMUSG00000106589 ENSMUST00000199770 4931419H13Rik antisense Interval_11097 chr1 179341652 179342202 + 0 NA intron (ENSMUSG00000055067.15, intron 5 of 11) protein_coding-intron (ENSMUSG00000055067.15, intron 5 of 11) 176078 ENSMUSG00000055067.15 ENSMUSG00000055067 ENSMUST00000194237 Smyd3 protein_coding Interval_106010 chr3 90615166 90615937 + 0 NA intron (ENSMUSG00000001025.8, intron 2 of 2) protein_coding-intron (ENSMUSG00000001025.8, intron 2 of 2) 1791 ENSMUSG00000001025.8 ENSMUSG00000001025 ENSMUST00000200289 S100a6 protein_coding Interval_30291 chr11 93064692 93065145 + 0 NA Intergenic Intergenic -33110 ENSMUSG00000056158.14 ENSMUSG00000056158 ENSMUST00000107863 Car10 protein_coding Interval_56629 chr14 120948136 120950496 + 0 NA Intergenic Intergenic 33469 ENSMUSG00000030662.10 ENSMUSG00000030662 ENSMUST00000228277 Ipo5 protein_coding Interval_58906 chr15 39887665 39888179 + 0 NA intron (ENSMUSG00000022305.13, intron 1 of 5) protein_coding-intron (ENSMUSG00000022305.13, intron 2 of 6) 55768 ENSMUSG00000022305.13 ENSMUSG00000022305 ENSMUST00000146714 Lrp12 protein_coding Interval_144474 chr7 25353742 25353992 + 0 NA exon (ENSMUSG00000045039.9, exon 31 of 41) protein_coding-exon (ENSMUSG00000045039.9, exon 31 of 41) 7886 ENSMUSG00000045039.9 ENSMUSG00000045039 ENSMUST00000153077 Megf8 protein_coding Interval_150441 chr7 110654458 110655363 + 0 NA Intergenic Intergenic -15552 ENSMUSG00000099803.1 ENSMUSG00000099803 ENSMUST00000186888 Gm28863 antisense Interval_29830 chr11 87143782 87143982 + 0 NA intron (ENSMUSG00000018548.15, intron 4 of 6) protein_coding-intron (ENSMUSG00000018548.15, intron 5 of 23) -16924 ENSMUSG00000085310.7 ENSMUSG00000085310 ENSMUST00000155828 Gm11491 antisense Interval_158427 chr8 83660534 83662920 + 0 NA TTS (ENSMUSG00000019433.9) protein_coding-TTS (ENSMUSG00000019433.9) -5415 ENSMUSG00000019464.6 ENSMUSG00000019464 ENSMUST00000212519 Ptger1 protein_coding Interval_147109 chr7 63211753 63213160 + 0 NA promoter-TSS (ENSMUSG00000030525.8) protein_coding-promoter-TSS (ENSMUSG00000030525.8) 113 ENSMUSG00000030525.8 ENSMUSG00000030525 ENSMUST00000208304 Chrna7 protein_coding Interval_172281 chrX 12299038 12300140 + 0 NA Intergenic Intergenic 55407 ENSMUSG00000087591.7 ENSMUSG00000087591 ENSMUST00000137281 Gm14635 lincRNA Interval_28755 chr11 78115168 78116109 + 0 NA promoter-TSS (ENSMUSG00000037750.16) protein_coding-promoter-TSS (ENSMUSG00000037750.16) 32 ENSMUSG00000037750.16 ENSMUSG00000037750 ENSMUST00000155571 Fam222b protein_coding Interval_83233 chr18 82906083 82906308 + 0 NA TTS (ENSMUSG00000117762.1) lincRNA-TTS (ENSMUSG00000117762.1) 4117 ENSMUSG00000117762.1 ENSMUSG00000117762 ENSMUST00000236957 Gm30889 lincRNA Interval_144171 chr7 19784857 19785524 + 0 NA TTS (ENSMUSG00000040525.13) protein_coding-TTS (ENSMUSG00000040525.13) 250 ENSMUSG00000040525.13 ENSMUSG00000040525 ENSMUST00000131602 Cblc protein_coding Interval_107975 chr3 118425542 118426357 + 0 NA Intergenic Intergenic -7908 ENSMUSG00000065569.2 ENSMUSG00000065569 ENSMUST00000083635 Mir137 miRNA Interval_7099 chr1 125744396 125745988 + 0 NA intron (ENSMUSG00000026343.6, intron 1 of 1) protein_coding-intron (ENSMUSG00000026343.6, intron 1 of 1) -76576 ENSMUSG00000101015.1 ENSMUSG00000101015 ENSMUST00000191239 Gm18444 processed_pseudogene Interval_11359 chr1 181191567 181191761 + 0 NA intron (ENSMUSG00000038733.14, intron 7 of 13) protein_coding-intron (ENSMUSG00000038733.14, intron 7 of 13) 20337 ENSMUSG00000038733.14 ENSMUSG00000038733 ENSMUST00000161531 Wdr26 protein_coding Interval_37687 chr12 71114038 71114695 + 0 NA intron (ENSMUSG00000021078.5, intron 1 of 3) protein_coding-intron (ENSMUSG00000021078.5, intron 2 of 4) 2896 ENSMUSG00000021078.5 ENSMUSG00000021078 ENSMUST00000221962 Tomm20l protein_coding Interval_51651 chr14 31125560 31125835 + 0 NA intron (ENSMUSG00000058351.11, intron 1 of 1) protein_coding-intron (ENSMUSG00000058351.11, intron 1 of 1) 3259 ENSMUSG00000058351.11 ENSMUSG00000058351 ENSMUST00000090205 Smim4 protein_coding Interval_83911 chr19 5525700 5525890 + 0 NA intron (ENSMUSG00000109695.1, intron 2 of 3) transcribed_processed_pseudogene-intron (ENSMUSG00000109695.1, intron 2 of 3) -5835 ENSMUSG00000109695.1 ENSMUSG00000109695 ENSMUST00000209326 Gm31166 transcribed_processed_pseudogene Interval_146437 chr7 45885615 45886482 + 0 NA TTS (ENSMUSG00000040231.16) protein_coding-TTS (ENSMUSG00000040231.16) -10417 ENSMUSG00000088555.1 ENSMUSG00000088555 ENSMUST00000157930 Gm22098 snRNA Interval_99536 chr2 163024087 163024321 + 0 NA TTS (ENSMUSG00000017858.12) protein_coding-TTS (ENSMUSG00000017858.12) 1761 ENSMUSG00000017858.12 ENSMUSG00000017858 ENSMUST00000152201 Ift52 protein_coding Interval_140578 chr6 119781260 119781772 + 0 NA intron (ENSMUSG00000030172.15, intron 4 of 19) protein_coding-intron (ENSMUSG00000030172.15, intron 3 of 18) -111404 ENSMUSG00000080719.1 ENSMUSG00000080719 ENSMUST00000121192 Gm15532 processed_pseudogene Interval_131576 chr5 138228047 138228645 + 0 NA intron (ENSMUSG00000047592.17, intron 1 of 2) protein_coding-intron (ENSMUSG00000047592.17, intron 1 of 5) 2448 ENSMUSG00000047592.17 ENSMUSG00000047592 ENSMUST00000159964 Nxpe5 protein_coding Interval_28605 chr11 77099970 77101259 + 0 NA intron (ENSMUSG00000050944.14, intron 11 of 11) protein_coding-intron (ENSMUSG00000050944.14, intron 17 of 17) 7566 ENSMUSG00000082550.1 ENSMUSG00000082550 ENSMUST00000117087 Gm12344 processed_pseudogene Interval_134269 chr6 24342057 24342966 + 0 NA Intergenic Intergenic 172556 ENSMUSG00000046192.4 ENSMUSG00000046192 ENSMUST00000052277 Iqub protein_coding Interval_122755 chr5 25154677 25155294 + 0 NA Intergenic Intergenic 13479 ENSMUSG00000077832.1 ENSMUSG00000077832 ENSMUST00000104642 Gm26051 miRNA Interval_59903 chr15 61388457 61389120 + 0 NA intron (ENSMUSG00000116299.1, intron 5 of 5) lincRNA-intron (ENSMUSG00000116299.1, intron 5 of 5) -30784 ENSMUSG00000065812.1 ENSMUSG00000065812 ENSMUST00000083878 Gm24696 snoRNA Interval_45458 chr13 55258299 55258886 + 0 NA intron (ENSMUSG00000021488.8, intron 3 of 20) protein_coding-intron (ENSMUSG00000021488.8, intron 5 of 22) -4191 ENSMUSG00000114359.1 ENSMUSG00000114359 ENSMUST00000224833 Gm47816 processed_pseudogene Interval_72777 chr17 32113009 32114586 + 0 NA promoter-TSS (ENSMUSG00000097305.2) antisense-promoter-TSS (ENSMUSG00000097305.2) 386 ENSMUSG00000097305.2 ENSMUSG00000097305 ENSMUST00000236612 Gm17276 antisense Interval_151250 chr7 120201056 120202358 + 0 NA intron (ENSMUSG00000030905.5, intron 1 of 2) protein_coding-intron (ENSMUSG00000030905.5, intron 1 of 7) 404 ENSMUSG00000030905.5 ENSMUSG00000030905 ENSMUST00000134067 Crym protein_coding Interval_812 chr1 11607477 11607799 + 0 NA TTS (ENSMUSG00000099845.1) processed_pseudogene-TTS (ENSMUSG00000099845.1) 762 ENSMUSG00000099845.1 ENSMUSG00000099845 ENSMUST00000188880 Gm29273 processed_pseudogene Interval_65885 chr16 30052869 30053741 + 0 NA Intergenic Intergenic -13033 ENSMUSG00000022528.8 ENSMUSG00000022528 ENSMUST00000161839 Hes1 protein_coding Interval_153546 chr8 3354274 3354630 + 0 NA exon (ENSMUSG00000004568.13, exon 1 of 1) protein_coding-exon (ENSMUSG00000004568.13, exon 1 of 1) 1015 ENSMUSG00000004568.13 ENSMUSG00000004568 ENSMUST00000145360 Arhgef18 protein_coding Interval_74382 chr17 49780895 49782894 + 0 NA intron (ENSMUSG00000023999.14, intron 13 of 22) protein_coding-intron (ENSMUSG00000023999.14, intron 13 of 22) 39931 ENSMUSG00000090012.1 ENSMUSG00000090012 ENSMUST00000159971 Gm16555 antisense Interval_138901 chr6 93260557 93262007 + 0 NA intron (ENSMUSG00000097462.7, intron 7 of 9) antisense-intron (ENSMUSG00000097462.7, intron 7 of 9) 19562 ENSMUSG00000107655.1 ENSMUSG00000107655 ENSMUST00000203784 Gm44220 TEC Interval_82514 chr18 74811661 74812399 + 0 NA Intergenic Intergenic 18647 ENSMUSG00000036880.10 ENSMUSG00000036880 ENSMUST00000237306 Acaa2 protein_coding Interval_49876 chr13 117503829 117504151 + 0 NA Intergenic Intergenic -44915 ENSMUSG00000114358.1 ENSMUSG00000114358 ENSMUST00000223786 Gm5200 processed_pseudogene Interval_128038 chr5 110437197 110438593 + 0 NA intron (ENSMUSG00000043323.17, intron 1 of 2) protein_coding-intron (ENSMUSG00000043323.17, intron 1 of 18) -10094 ENSMUSG00000105482.1 ENSMUSG00000105482 ENSMUST00000196305 Gm42596 antisense Interval_603 chr1 8625154 8626415 + 0 NA intron (ENSMUSG00000025909.16, intron 10 of 20) protein_coding-intron (ENSMUSG00000025909.16, intron 6 of 16) 19075 ENSMUSG00000103884.1 ENSMUSG00000103884 ENSMUST00000193281 Gm37005 TEC Interval_66868 chr16 38203988 38204480 + 0 NA intron (ENSMUSG00000022812.14, intron 6 of 6) protein_coding-intron (ENSMUSG00000022812.14, intron 7 of 10) 3357 ENSMUSG00000098908.1 ENSMUSG00000098908 ENSMUST00000184976 Gm27931 snoRNA Interval_43200 chr13 25136304 25136621 + 0 NA intron (ENSMUSG00000035910.15, intron 7 of 9) protein_coding-intron (ENSMUSG00000035910.15, intron 7 of 9) -5398 ENSMUSG00000082667.1 ENSMUSG00000082667 ENSMUST00000118813 Gm11348 processed_pseudogene Interval_90691 chr2 31934469 31935420 + 0 NA intron (ENSMUSG00000026840.14, intron 23 of 27) protein_coding-intron (ENSMUSG00000026840.14, intron 23 of 27) -26975 ENSMUSG00000001864.13 ENSMUSG00000001864 ENSMUST00000145137 Aif1l protein_coding Interval_102896 chr3 32616104 32617263 + 0 NA promoter-TSS (ENSMUSG00000027669.14) protein_coding-promoter-TSS (ENSMUSG00000027669.14) -204 ENSMUSG00000027669.14 ENSMUSG00000027669 ENSMUST00000143588 Gnb4 protein_coding Interval_138508 chr6 88809453 88810285 + 0 NA intron (ENSMUSG00000033174.17, intron 4 of 6) protein_coding-intron (ENSMUSG00000033174.17, intron 5 of 7) 7626 ENSMUSG00000107966.1 ENSMUSG00000107966 ENSMUST00000203158 Gm44001 TEC Interval_102416 chr3 25125222 25125676 + 0 NA intron (ENSMUSG00000102758.3, intron 1 of 2) protein_coding-intron (ENSMUSG00000102758.3, intron 1 of 2) -18619 ENSMUSG00000102876.1 ENSMUSG00000102876 ENSMUST00000194368 Gm37136 TEC Interval_155806 chr8 38977337 38977947 + 0 NA Intergenic Intergenic 5393 ENSMUSG00000077445.1 ENSMUSG00000077445 ENSMUST00000104257 Gm23128 snoRNA Interval_128652 chr5 114515642 114518316 + 0 NA Intergenic Intergenic -34310 ENSMUSG00000086302.1 ENSMUSG00000086302 ENSMUST00000156209 Gm13790 lincRNA Interval_20224 chr10 116260600 116261715 + 0 NA intron (ENSMUSG00000020151.16, intron 10 of 10) protein_coding-intron (ENSMUSG00000020151.16, intron 13 of 13) -14366 ENSMUSG00000020154.10 ENSMUSG00000020154 ENSMUST00000092167 Ptprb protein_coding Interval_73020 chr17 34169265 34169585 + 0 NA Intergenic Intergenic 12580 ENSMUSG00000079547.4 ENSMUSG00000079547 ENSMUST00000174765 H2-DMb1 protein_coding Interval_158555 chr8 84446982 84447389 + 0 NA intron (ENSMUSG00000034656.18, intron 3 of 48) protein_coding-intron (ENSMUSG00000034656.18, intron 1 of 46) -66604 ENSMUSG00000064392.1 ENSMUSG00000064392 ENSMUST00000082458 Gm23626 snoRNA Interval_120911 chr4 151514957 151515907 + 0 NA intron (ENSMUSG00000014592.21, intron 5 of 7) protein_coding-intron (ENSMUSG00000014592.21, intron 4 of 23) 138962 ENSMUSG00000085593.1 ENSMUSG00000085593 ENSMUST00000129097 4930589P08Rik antisense Interval_155611 chr8 35142564 35143834 + 0 NA Intergenic Intergenic 7247 ENSMUSG00000109678.1 ENSMUSG00000109678 ENSMUST00000210093 Gm45626 processed_pseudogene Interval_133133 chr5 150072282 150072488 + 0 NA intron (ENSMUSG00000053368.13, intron 16 of 16) protein_coding-intron (ENSMUSG00000053368.13, intron 17 of 17) 10410 ENSMUSG00000107384.1 ENSMUSG00000107384 ENSMUST00000202037 Gm42557 antisense Interval_153597 chr8 3613143 3613907 + 0 NA TTS (ENSMUSG00000019470.12) protein_coding-TTS (ENSMUSG00000019470.12) -2004 ENSMUSG00000084603.1 ENSMUSG00000084603 ENSMUST00000122654 Gm22204 misc_RNA Interval_57276 chr15 8368810 8369011 + 0 NA intron (ENSMUSG00000022141.7, intron 4 of 46) protein_coding-intron (ENSMUSG00000022141.7, intron 4 of 46) 75553 ENSMUSG00000022141.7 ENSMUSG00000022141 ENSMUST00000052965 Nipbl protein_coding Interval_42496 chr13 14136169 14136444 + 0 NA exon (ENSMUSG00000039219.18, exon 1 of 1) protein_coding-exon (ENSMUSG00000039219.18, exon 1 of 1) -17451 ENSMUSG00000077802.1 ENSMUSG00000077802 ENSMUST00000104614 n-R5s52 rRNA Interval_132392 chr5 144678940 144679363 + 0 NA Intergenic Intergenic 44646 ENSMUSG00000082524.3 ENSMUSG00000082524 ENSMUST00000121256 Gm6272 processed_pseudogene Interval_79205 chr18 25645622 25646581 + 0 NA intron (ENSMUSG00000024268.16, intron 2 of 5) protein_coding-intron (ENSMUSG00000024268.16, intron 2 of 12) -47647 ENSMUSG00000084537.1 ENSMUSG00000084537 ENSMUST00000122588 Gm25845 misc_RNA Interval_37364 chr12 65498297 65498880 + 0 NA Intergenic Intergenic -31664 ENSMUSG00000088441.1 ENSMUSG00000088441 ENSMUST00000157816 Gm25599 snRNA Interval_100467 chr2 169221425 169222402 + 0 NA Intergenic Intergenic -13078 ENSMUSG00000085369.1 ENSMUSG00000085369 ENSMUST00000152494 9430093N23Rik lincRNA Interval_1491 chr1 24107466 24108381 + 0 NA Intergenic Intergenic 7298 ENSMUSG00000102398.1 ENSMUSG00000102398 ENSMUST00000192408 Gm37580 TEC Interval_134436 chr6 28672195 28672922 + 0 NA intron (ENSMUSG00000001424.14, intron 3 of 4) protein_coding-intron (ENSMUSG00000001424.14, intron 12 of 23) 104486 ENSMUSG00000103132.1 ENSMUSG00000103132 ENSMUST00000194736 Gm37978 TEC Interval_105429 chr3 86252786 86253318 + 0 NA intron (ENSMUSG00000028080.16, intron 1 of 38) protein_coding-intron (ENSMUSG00000028080.16, intron 2 of 56) 10523 ENSMUSG00000103759.1 ENSMUSG00000103759 ENSMUST00000193963 Gm37288 processed_pseudogene Interval_49978 chr13 119250205 119250836 + 0 NA Intergenic Intergenic 19084 ENSMUSG00000105411.1 ENSMUSG00000105411 ENSMUST00000199467 Gm44488 miRNA Interval_171647 chr9 119932358 119932929 + 0 NA TTS (ENSMUSG00000032513.8) protein_coding-TTS (ENSMUSG00000032513.8) 209 ENSMUSG00000032513.8 ENSMUSG00000032513 ENSMUST00000213409 Gorasp1 protein_coding Interval_64623 chr16 13729769 13731098 + 0 NA promoter-TSS (ENSMUSG00000022683.13) protein_coding-promoter-TSS (ENSMUSG00000022683.13) 246 ENSMUSG00000022683.13 ENSMUSG00000022683 ENSMUST00000156504 Pla2g10 protein_coding Interval_30544 chr11 95024419 95025518 + 0 NA exon (ENSMUSG00000047181.12, exon 10 of 10) protein_coding-exon (ENSMUSG00000047181.12, exon 10 of 10) -7791 ENSMUSG00000087630.1 ENSMUSG00000087630 ENSMUST00000138855 Gm11513 antisense Interval_80752 chr18 46836406 46837395 + 0 NA Intergenic Intergenic -13139 ENSMUSG00000024481.5 ENSMUSG00000024481 ENSMUST00000234519 Lvrn protein_coding Interval_27009 chr11 62344787 62345838 + 0 NA promoter-TSS (ENSMUSG00000018501.17) protein_coding-promoter-TSS (ENSMUSG00000018501.17) 13891 ENSMUSG00000081944.1 ENSMUSG00000081944 ENSMUST00000121709 Gm12276 processed_pseudogene Interval_136315 chr6 52961953 52963160 + 0 NA intron (ENSMUSG00000063568.11, intron 1 of 4) protein_coding-intron (ENSMUSG00000063568.11, intron 1 of 4) 47976 ENSMUSG00000089209.1 ENSMUSG00000089209 ENSMUST00000158584 Gm26215 scaRNA Interval_73191 chr17 35499675 35499940 + 0 NA Intergenic Intergenic -9014 ENSMUSG00000024406.16 ENSMUSG00000024406 ENSMUST00000174782 Pou5f1 protein_coding Interval_145998 chr7 42987062 42987424 + 0 NA Intergenic Intergenic 28892 ENSMUSG00000076190.1 ENSMUSG00000076190 ENSMUST00000102235 Gm23256 miRNA Interval_51487 chr14 28257118 28257324 + 0 NA intron (ENSMUSG00000040640.11, intron 13 of 15) protein_coding-intron (ENSMUSG00000040640.11, intron 13 of 15) -158776 ENSMUSG00000114503.1 ENSMUSG00000114503 ENSMUST00000225453 Gm20242 TEC Interval_17980 chr10 81216338 81218985 + 0 NA intron (ENSMUSG00000034958.11, intron 3 of 12) protein_coding-intron (ENSMUSG00000034958.11, intron 3 of 12) 13124 ENSMUSG00000034958.11 ENSMUSG00000034958 ENSMUST00000133555 Atcay protein_coding Interval_24380 chr11 32805621 32806436 + 0 NA Intergenic Intergenic -15303 ENSMUSG00000085676.1 ENSMUSG00000085676 ENSMUST00000122821 4930555O08Rik lincRNA Interval_147336 chr7 65929672 65930152 + 0 NA intron (ENSMUSG00000030513.14, intron 5 of 19) protein_coding-intron (ENSMUSG00000030513.14, intron 5 of 21) -23100 ENSMUSG00000030513.14 ENSMUSG00000030513 ENSMUST00000177272 Pcsk6 protein_coding Interval_10137 chr1 166031457 166031668 + 0 NA intron (ENSMUSG00000097196.2, intron 1 of 1) lincRNA-intron (ENSMUSG00000097196.2, intron 1 of 1) 12129 ENSMUSG00000102890.1 ENSMUSG00000102890 ENSMUST00000195801 Gm7626 processed_pseudogene Interval_107230 chr3 104777392 104777760 + 0 NA promoter-TSS (ENSMUSG00000055865.8) protein_coding-promoter-TSS (ENSMUSG00000055865.8) 4264 ENSMUSG00000055865.8 ENSMUSG00000055865 ENSMUST00000162644 Tafa3 protein_coding Interval_154192 chr8 13315819 13316478 + 0 NA intron (ENSMUSG00000038497.7, intron 3 of 5) protein_coding-intron (ENSMUSG00000038497.7, intron 10 of 12) -22673 ENSMUSG00000038482.11 ENSMUSG00000038482 ENSMUST00000209945 Tfdp1 protein_coding Interval_56936 chr14 123660087 123660293 + 0 NA promoter-TSS (ENSMUSG00000032925.16) protein_coding-promoter-TSS (ENSMUSG00000032925.16) 65 ENSMUSG00000032925.16 ENSMUSG00000032925 ENSMUST00000132026 Itgbl1 protein_coding Interval_158185 chr8 79609421 79609699 + 0 NA Intergenic Intergenic -51524 ENSMUSG00000036990.13 ENSMUSG00000036990 ENSMUST00000172614 Otud4 protein_coding Interval_42525 chr13 14539049 14539294 + 0 NA Intergenic Intergenic 16655 ENSMUSG00000113654.1 ENSMUSG00000113654 ENSMUST00000222432 Gm30893 antisense Interval_128371 chr5 112864825 112865416 + 0 NA intron (ENSMUSG00000072720.9, intron 6 of 16) protein_coding-intron (ENSMUSG00000072720.9, intron 11 of 43) 7376 ENSMUSG00000072720.9 ENSMUSG00000072720 ENSMUST00000183273 Myo18b protein_coding Interval_80313 chr18 39098863 39099182 + 0 NA promoter-TSS (ENSMUSG00000036452.18) protein_coding-promoter-TSS (ENSMUSG00000036452.18) -104830 ENSMUSG00000086991.1 ENSMUSG00000086991 ENSMUST00000131421 Gm15334 antisense Interval_131826 chr5 140157475 140159122 + 0 NA intron (ENSMUSG00000029554.15, intron 11 of 16) protein_coding-intron (ENSMUSG00000029554.15, intron 11 of 17) -6811 ENSMUSG00000106497.1 ENSMUSG00000106497 ENSMUST00000200614 Gm43195 TEC Interval_173127 chrX 73007759 73008875 + 0 NA intron (ENSMUSG00000031351.15, intron 12 of 18) protein_coding-intron (ENSMUSG00000031351.15, intron 12 of 18) 16238 ENSMUSG00000089357.1 ENSMUSG00000089357 ENSMUST00000158732 Mir2137 miRNA Interval_163599 chr9 22443519 22443765 + 0 NA intron (ENSMUSG00000036411.10, intron 4 of 4) protein_coding-intron (ENSMUSG00000036411.10, intron 6 of 6) -10648 ENSMUSG00000091159.1 ENSMUSG00000091159 ENSMUST00000168332 Gm17545 protein_coding Interval_123662 chr5 34358334 34359168 + 0 NA Intergenic Intergenic 7635 ENSMUSG00000029110.13 ENSMUSG00000029110 ENSMUST00000183265 Rnf4 protein_coding Interval_93822 chr2 77216992 77217190 + 0 NA intron (ENSMUSG00000042272.17, intron 6 of 11) protein_coding-intron (ENSMUSG00000042272.17, intron 6 of 17) -17664 ENSMUSG00000042272.17 ENSMUSG00000042272 ENSMUST00000139021 Sestd1 protein_coding Interval_84210 chr19 8785652 8786710 + 0 NA promoter-TSS (ENSMUSG00000003680.16) protein_coding-promoter-TSS (ENSMUSG00000003680.16) -2182 ENSMUSG00000003680.16 ENSMUSG00000003680 ENSMUST00000176331 Taf6l protein_coding Interval_11847 chr1 186241078 186241597 + 0 NA Intergenic Intergenic 59080 ENSMUSG00000102790.1 ENSMUSG00000102790 ENSMUST00000193401 Gm37272 TEC Interval_25966 chr11 53212442 53212745 + 0 NA Intergenic Intergenic 11909 ENSMUSG00000058073.4 ENSMUSG00000058073 ENSMUST00000117979 Gm11189 processed_pseudogene Interval_60524 chr15 74629589 74630297 + 0 NA intron (ENSMUSG00000022603.9, intron 3 of 26) protein_coding-intron (ENSMUSG00000022603.9, intron 3 of 26) -21715 ENSMUSG00000022603.9 ENSMUSG00000022603 ENSMUST00000175931 Mroh4 protein_coding Interval_74973 chr17 58596656 58597105 + 0 NA Intergenic Intergenic 3266 ENSMUSG00000046952.9 ENSMUSG00000046952 ENSMUST00000050706 Gm5815 processed_pseudogene Interval_10484 chr1 171258657 171258950 + 0 NA exon (ENSMUSG00000006403.13, exon 8 of 8) protein_coding-exon (ENSMUSG00000006403.13, exon 8 of 8) -7552 ENSMUSG00000013593.12 ENSMUSG00000013593 ENSMUST00000191871 Ndufs2 protein_coding Interval_12566 chr10 3287017 3287231 + 0 NA Intergenic Intergenic -15925 ENSMUSG00000111114.1 ENSMUSG00000111114 ENSMUST00000215318 Gm18703 processed_pseudogene Interval_14861 chr10 40583435 40584199 + 0 NA intron (ENSMUSG00000019834.15, intron 3 of 7) protein_coding-intron (ENSMUSG00000019834.15, intron 3 of 7) 13481 ENSMUSG00000019834.15 ENSMUSG00000019834 ENSMUST00000019978 Slc22a16 protein_coding Interval_32523 chr11 108126699 108127172 + 0 NA intron (ENSMUSG00000050965.14, intron 3 of 16) protein_coding-intron (ENSMUSG00000050965.14, intron 3 of 16) -54915 ENSMUSG00000084978.1 ENSMUSG00000084978 ENSMUST00000153899 Gm11655 antisense Interval_141627 chr6 131447725 131447946 + 0 NA Intergenic Intergenic -13924 ENSMUSG00000107832.1 ENSMUSG00000107832 ENSMUST00000204695 Gm18688 processed_pseudogene Interval_65722 chr16 25967488 25967712 + 0 NA intron (ENSMUSG00000038168.5, intron 13 of 14) protein_coding-intron (ENSMUSG00000038168.5, intron 13 of 14) 11125 ENSMUSG00000090257.1 ENSMUSG00000090257 ENSMUST00000161614 Gm4524 antisense Interval_170035 chr9 103891722 103891906 + 0 NA intron (ENSMUSG00000099722.3, intron 4 of 4) lincRNA-intron (ENSMUSG00000099722.3, intron 4 of 4) 3805 ENSMUSG00000100266.2 ENSMUSG00000100266 ENSMUST00000187540 Gm5372 processed_pseudogene Interval_48596 chr13 100575541 100575776 + 0 NA Intergenic Intergenic -15626 ENSMUSG00000114332.1 ENSMUSG00000114332 ENSMUST00000223825 Gm8847 processed_pseudogene Interval_127471 chr5 104208472 104208869 + 0 NA intron (ENSMUSG00000029307.7, intron 3 of 5) protein_coding-intron (ENSMUSG00000029307.7, intron 3 of 5) 6057 ENSMUSG00000029307.7 ENSMUSG00000029307 ENSMUST00000066708 Dmp1 protein_coding Interval_23589 chr11 23599976 23600211 + 0 NA intron (ENSMUSG00000042208.15, intron 12 of 21) protein_coding-intron (ENSMUSG00000042208.15, intron 10 of 19) 26768 ENSMUSG00000089103.1 ENSMUSG00000089103 ENSMUST00000158478 Gm23114 rRNA Interval_35854 chr12 31256678 31257385 + 0 NA Intergenic Intergenic 1826 ENSMUSG00000112567.1 ENSMUSG00000112567 ENSMUST00000219694 Gm32899 processed_pseudogene Interval_82667 chr18 75800588 75800949 + 0 NA Intergenic Intergenic -19447 ENSMUSG00000044646.15 ENSMUSG00000044646 ENSMUST00000167921 Zbtb7c protein_coding Interval_66683 chr16 36092206 36092961 + 0 NA TTS (ENSMUSG00000075229.11) protein_coding-TTS (ENSMUSG00000075229.11) 3379 ENSMUSG00000075229.11 ENSMUSG00000075229 ENSMUST00000231239 Ccdc58 protein_coding Interval_90230 chr2 29159446 29159655 + 0 NA intron (ENSMUSG00000043535.13, intron 3 of 5) protein_coding-intron (ENSMUSG00000043535.13, intron 15 of 25) 33664 ENSMUSG00000043535.13 ENSMUSG00000043535 ENSMUST00000145422 Setx protein_coding Interval_46829 chr13 71757249 71757452 + 0 NA intron (ENSMUSG00000114038.1, intron 3 of 7) processed_transcript-intron (ENSMUSG00000114038.1, intron 3 of 7) 28545 ENSMUSG00000114038.1 ENSMUSG00000114038 ENSMUST00000223183 Gm40999 processed_transcript Interval_137248 chr6 70751964 70752205 + 0 NA Intergenic Intergenic 25649 ENSMUSG00000076609.2 ENSMUSG00000076609 ENSMUST00000103410 Igkc IG_C_gene Interval_58165 chr15 30145466 30145877 + 0 NA Intergenic Intergenic -93115 ENSMUSG00000065726.1 ENSMUSG00000065726 ENSMUST00000083792 Gm26163 snoRNA Interval_15454 chr10 46919060 46919664 + 0 NA Intergenic Intergenic -62860 ENSMUSG00000111499.1 ENSMUSG00000111499 ENSMUST00000216234 Gm47562 processed_pseudogene Interval_155512 chr8 34047986 34048484 + 0 NA Intergenic Intergenic -6387 ENSMUSG00000054618.8 ENSMUSG00000054618 ENSMUST00000149618 Gm9951 lincRNA Interval_13008 chr10 9175041 9175477 + 0 NA Intergenic Intergenic 49492 ENSMUSG00000112543.1 ENSMUSG00000112543 ENSMUST00000218588 Gm48744 TEC Interval_144345 chr7 24600895 24601443 + 0 NA intron (ENSMUSG00000064254.6, intron 4 of 7) protein_coding-intron (ENSMUSG00000064254.6, intron 4 of 7) -9594 ENSMUSG00000074277.4 ENSMUSG00000074277 ENSMUST00000205330 Phldb3 protein_coding Interval_61319 chr15 80822204 80822526 + 0 NA intron (ENSMUSG00000047888.10, intron 1 of 17) protein_coding-intron (ENSMUSG00000047888.10, intron 4 of 24) -100699 ENSMUSG00000047888.10 ENSMUSG00000047888 ENSMUST00000228525 Tnrc6b protein_coding Interval_48739 chr13 102654546 102656978 + 0 NA Intergenic Intergenic -37849 ENSMUSG00000021624.9 ENSMUSG00000021624 ENSMUST00000172138 Cd180 protein_coding Interval_117523 chr4 124358245 124360966 + 0 NA Intergenic Intergenic -23924 ENSMUSG00000088933.1 ENSMUSG00000088933 ENSMUST00000158308 Gm22983 snRNA Interval_124607 chr5 52326017 52326237 + 0 NA Intergenic Intergenic 16233 ENSMUSG00000104751.1 ENSMUSG00000104751 ENSMUST00000198797 Gm43179 lincRNA Interval_143355 chr7 6096150 6096438 + 0 NA intron (ENSMUSG00000034690.13, intron 6 of 8) protein_coding-intron (ENSMUSG00000034690.13, intron 7 of 9) 35787 ENSMUSG00000034690.13 ENSMUSG00000034690 ENSMUST00000207267 Nlrp4c protein_coding Interval_142281 chr6 140423553 140425261 + 0 NA exon (ENSMUSG00000030231.11, exon 2 of 31) protein_coding-exon (ENSMUSG00000030231.11, exon 2 of 31) 4236 ENSMUSG00000107891.1 ENSMUSG00000107891 ENSMUST00000204085 Gm5051 processed_pseudogene Interval_130552 chr5 128760774 128761801 + 0 NA promoter-TSS (ENSMUSG00000029420.14) protein_coding-promoter-TSS (ENSMUSG00000029420.14) 93 ENSMUSG00000029420.14 ENSMUSG00000029420 ENSMUST00000196569 Rimbp2 protein_coding Interval_35480 chr12 22968770 22969126 + 0 NA intron (ENSMUSG00000073164.11, intron 3 of 4) lincRNA-intron (ENSMUSG00000073164.11, intron 2 of 3) -8642 ENSMUSG00000113670.1 ENSMUSG00000113670 ENSMUST00000222206 Gm49686 transcribed_unprocessed_pseudogene Interval_37932 chr12 73120246 73120479 + 0 NA Intergenic Intergenic -3355 ENSMUSG00000021103.12 ENSMUSG00000021103 ENSMUST00000021523 Mnat1 protein_coding Interval_119140 chr4 135808197 135809415 + 0 NA exon (ENSMUSG00000037139.15, exon 33 of 37) protein_coding-exon (ENSMUSG00000037139.15, exon 33 of 37) 10616 ENSMUSG00000037139.15 ENSMUSG00000037139 ENSMUST00000142177 Myom3 protein_coding Interval_168577 chr9 83720002 83720199 + 0 NA Intergenic Intergenic 28625 ENSMUSG00000100155.1 ENSMUSG00000100155 ENSMUST00000189326 Gm2109 lincRNA Interval_126430 chr5 88521375 88522018 + 0 NA intron (ENSMUSG00000067149.6, intron 2 of 2) protein_coding-intron (ENSMUSG00000067149.6, intron 3 of 3) 4944 ENSMUSG00000067149.6 ENSMUSG00000067149 ENSMUST00000087033 Jchain protein_coding Interval_6316 chr1 105814811 105815928 + 0 NA TTS (ENSMUSG00000026321.7) protein_coding-TTS (ENSMUSG00000026321.7) 34619 ENSMUSG00000026321.7 ENSMUSG00000026321 ENSMUST00000187658 Tnfrsf11a protein_coding Interval_34177 chr11 121117657 121118800 + 0 NA exon (ENSMUSG00000039337.3, exon 1 of 3) protein_coding-exon (ENSMUSG00000039337.3, exon 1 of 3) 449 ENSMUSG00000039337.3 ENSMUSG00000039337 ENSMUST00000039146 Tex19.2 protein_coding Interval_44355 chr13 44085470 44086680 + 0 NA Intergenic Intergenic 13885 ENSMUSG00000113276.1 ENSMUSG00000113276 ENSMUST00000223038 Gm33630 lincRNA Interval_119047 chr4 135219550 135220137 + 0 NA intron (ENSMUSG00000037242.8, intron 4 of 5) protein_coding-intron (ENSMUSG00000037242.8, intron 4 of 5) 52971 ENSMUSG00000037242.8 ENSMUSG00000037242 ENSMUST00000143370 Clic4 protein_coding Interval_37039 chr12 56695126 56697441 + 0 NA exon (ENSMUSG00000001497.18, exon 1 of 3) protein_coding-exon (ENSMUSG00000001497.18, exon 1 of 3) -3319 ENSMUSG00000089894.2 ENSMUSG00000089894 ENSMUST00000159874 Gm15524 antisense Interval_29695 chr11 86164037 86164717 + 0 NA intron (ENSMUSG00000034329.16, intron 6 of 19) protein_coding-intron (ENSMUSG00000034329.16, intron 6 of 19) -20952 ENSMUSG00000080823.1 ENSMUSG00000080823 ENSMUST00000121382 Atp5l-ps2 processed_pseudogene Interval_153818 chr8 8983053 8985356 + 0 NA Intergenic Intergenic -51505 ENSMUSG00000109346.1 ENSMUSG00000109346 ENSMUST00000209045 Gm44515 lincRNA Interval_143190 chr7 4337673 4337933 + 0 NA promoter-TSS (ENSMUSG00000062524.4) protein_coding-promoter-TSS (ENSMUSG00000062524.4) 34 ENSMUSG00000062524.4 ENSMUSG00000062524 ENSMUST00000126417 Ncr1 protein_coding Interval_92620 chr2 61600624 61600825 + 0 NA intron (ENSMUSG00000064289.15, intron 2 of 8) protein_coding-intron (ENSMUSG00000064289.15, intron 1 of 7) -43107 ENSMUSG00000064289.15 ENSMUSG00000064289 ENSMUST00000154693 Tank protein_coding Interval_7152 chr1 127244050 127244944 + 0 NA intron (ENSMUSG00000036155.13, intron 1 of 7) protein_coding-intron (ENSMUSG00000036155.13, intron 1 of 17) 2406 ENSMUSG00000104039.1 ENSMUSG00000104039 ENSMUST00000191635 Gm37772 TEC Interval_106383 chr3 95798134 95798931 + 0 NA intron (ENSMUSG00000028106.13, intron 1 of 9) protein_coding-intron (ENSMUSG00000028106.13, intron 1 of 10) -1648 ENSMUSG00000089493.1 ENSMUSG00000089493 ENSMUST00000158868 Gm26361 snRNA Interval_8280 chr1 136910284 136910661 + 0 NA intron (ENSMUSG00000026398.14, intron 6 of 8) protein_coding-intron (ENSMUSG00000026398.14, intron 6 of 8) 38701 ENSMUSG00000026398.14 ENSMUSG00000026398 ENSMUST00000195428 Nr5a2 protein_coding Interval_77775 chr18 3427282 3428397 + 0 NA intron (ENSMUSG00000024231.15, intron 16 of 20) protein_coding-intron (ENSMUSG00000024231.15, intron 16 of 19) -18975 ENSMUSG00000117370.1 ENSMUSG00000117370 ENSMUST00000235096 Gm6235 processed_pseudogene Interval_118668 chr4 133092351 133097078 + 0 NA Intergenic Intergenic -35826 ENSMUSG00000028868.13 ENSMUSG00000028868 ENSMUST00000136637 Wasf2 protein_coding Interval_141166 chr6 125368181 125368853 + 0 NA intron (ENSMUSG00000038167.6, intron 14 of 16) protein_coding-intron (ENSMUSG00000038167.6, intron 14 of 16) 10752 ENSMUSG00000030341.17 ENSMUSG00000030341 ENSMUST00000134803 Tnfrsf1a protein_coding Interval_28141 chr11 73130867 73131521 + 0 NA intron (ENSMUSG00000005947.11, intron 22 of 25) protein_coding-intron (ENSMUSG00000005947.11, intron 22 of 30) 7100 ENSMUSG00000050107.2 ENSMUSG00000050107 ENSMUST00000052140 Haspin protein_coding Interval_41511 chr12 115599317 115599912 + 0 NA Intergenic Intergenic 4762 ENSMUSG00000095863.2 ENSMUSG00000095863 ENSMUST00000198646 Ighv1-67 IG_V_gene Interval_155119 chr8 26780539 26781097 + 0 NA TTS (ENSMUSG00000110297.1) processed_pseudogene-TTS (ENSMUSG00000110297.1) 503 ENSMUSG00000110297.1 ENSMUSG00000110297 ENSMUST00000209789 Gm45647 processed_pseudogene Interval_44153 chr13 41268013 41268296 + 0 NA intron (ENSMUSG00000091264.3, intron 1 of 1) protein_coding-intron (ENSMUSG00000091264.3, intron 1 of 1) 5823 ENSMUSG00000090853.1 ENSMUSG00000090853 ENSMUST00000163881 Gm17364 protein_coding Interval_81458 chr18 60877401 60877614 + 0 NA Intergenic Intergenic -29061 ENSMUSG00000024613.16 ENSMUSG00000024613 ENSMUST00000177343 Tcof1 protein_coding Interval_109759 chr3 146662597 146662905 + 0 NA exon (ENSMUSG00000048652.12, exon 3 of 4) protein_coding-exon (ENSMUSG00000048652.12, exon 3 of 4) -11436 ENSMUSG00000090202.1 ENSMUSG00000090202 ENSMUST00000149825 4930503B20Rik protein_coding Interval_5708 chr1 91103722 91104899 + 0 NA intron (ENSMUSG00000026305.15, intron 15 of 24) protein_coding-intron (ENSMUSG00000026305.15, intron 5 of 12) -40779 ENSMUSG00000070732.2 ENSMUSG00000070732 ENSMUST00000185229 Rbm44 protein_coding Interval_4334 chr1 72790610 72791048 + 0 NA Intergenic Intergenic -57870 ENSMUSG00000039323.18 ENSMUSG00000039323 ENSMUST00000155703 Igfbp2 protein_coding Interval_135449 chr6 39401405 39401878 + 0 NA intron (ENSMUSG00000029922.15, intron 1 of 4) protein_coding-intron (ENSMUSG00000029922.15, intron 4 of 7) 3089 ENSMUSG00000029922.15 ENSMUSG00000029922 ENSMUST00000114822 Mkrn1 protein_coding Interval_1927 chr1 34602037 34603236 + 0 NA Intergenic Intergenic 5083 ENSMUSG00000100524.1 ENSMUSG00000100524 ENSMUST00000186179 Gm28418 processed_pseudogene Interval_132826 chr5 148149323 148149660 + 0 NA intron (ENSMUSG00000029651.16, intron 2 of 3) protein_coding-intron (ENSMUSG00000029651.16, intron 4 of 14) 34886 ENSMUSG00000066554.6 ENSMUSG00000066554 ENSMUST00000150411 Gm10167 processed_pseudogene Interval_150330 chr7 109648334 109649813 + 0 NA intron (ENSMUSG00000031024.13, intron 1 of 3) protein_coding-intron (ENSMUSG00000031024.13, intron 1 of 3) -32320 ENSMUSG00000031024.13 ENSMUSG00000031024 ENSMUST00000208734 Denn2b protein_coding Interval_161393 chr8 120203761 120204040 + 0 NA TTS (ENSMUSG00000097960.1) lincRNA-TTS (ENSMUSG00000097960.1) 24330 ENSMUSG00000097960.1 ENSMUSG00000097960 ENSMUST00000183235 A330074K22Rik lincRNA Interval_32665 chr11 109507543 109508439 + 0 NA intron (ENSMUSG00000020604.13, intron 2 of 11) protein_coding-intron (ENSMUSG00000020604.13, intron 4 of 13) -8167 ENSMUSG00000088106.1 ENSMUSG00000088106 ENSMUST00000157481 Gm22378 snRNA Interval_140836 chr6 122188640 122189499 + 0 NA intron (ENSMUSG00000101397.6, intron 4 of 32) transcribed_unprocessed_pseudogene-intron (ENSMUSG00000101397.6, intron 4 of 32) -11068 ENSMUSG00000098864.1 ENSMUSG00000098864 ENSMUST00000184836 Gm27703 miRNA Interval_82967 chr18 80068352 80068714 + 0 NA intron (ENSMUSG00000056214.9, intron 1 of 2) protein_coding-intron (ENSMUSG00000056214.9, intron 1 of 2) -18273 ENSMUSG00000118269.1 ENSMUSG00000118269 ENSMUST00000235723 Gm50195 TEC Interval_103526 chr3 46869556 46871493 + 0 NA Intergenic Intergenic 30258 ENSMUSG00000098417.1 ENSMUSG00000098417 ENSMUST00000183392 Mir6379 miRNA Interval_10316 chr1 168662764 168663566 + 0 NA Intergenic Intergenic 12717 ENSMUSG00000103463.1 ENSMUSG00000103463 ENSMUST00000194611 1700063I16Rik TEC Interval_144975 chr7 29210875 29214093 + 0 NA promoter-TSS (ENSMUSG00000049676.14) protein_coding-promoter-TSS (ENSMUSG00000049676.14) 1498 ENSMUSG00000049676.14 ENSMUSG00000049676 ENSMUST00000167064 Catsperg1 protein_coding Interval_115713 chr4 102959431 102959743 + 0 NA intron (ENSMUSG00000028524.21, intron 11 of 16) protein_coding-intron (ENSMUSG00000028524.21, intron 18 of 23) -19104 ENSMUSG00000028523.14 ENSMUSG00000028523 ENSMUST00000139883 Tctex1d1 protein_coding Interval_125282 chr5 65921719 65922476 + 0 NA Intergenic Intergenic 10473 ENSMUSG00000107254.1 ENSMUSG00000107254 ENSMUST00000201871 Gm43769 TEC Interval_53032 chr14 53675877 53676687 + 0 NA intron (ENSMUSG00000096678.3, intron 1 of 1) TR_V_gene-intron (ENSMUSG00000096678.3, intron 1 of 1) 141 ENSMUSG00000096678.3 ENSMUSG00000096678 ENSMUST00000103662 Trav9-4 TR_V_gene Interval_169619 chr9 99479043 99479696 + 0 NA exon (ENSMUSG00000032468.11, exon 22 of 22) protein_coding-exon (ENSMUSG00000032468.11, exon 22 of 22) 27894 ENSMUSG00000046242.8 ENSMUSG00000046242 ENSMUST00000056103 Nme9 protein_coding Interval_110063 chr3 152912269 152913220 + 0 NA intron (ENSMUSG00000039047.17, intron 14 of 14) protein_coding-intron (ENSMUSG00000039037.5, intron 2 of 4) -7496 ENSMUSG00000090017.1 ENSMUSG00000090017 ENSMUST00000160076 Gm16213 antisense Interval_40447 chr12 104936138 104936469 + 0 NA intron (ENSMUSG00000054150.12, intron 17 of 17) protein_coding-intron (ENSMUSG00000054150.12, intron 16 of 16) -9614 ENSMUSG00000100975.2 ENSMUSG00000100975 ENSMUST00000185486 Gm28875 lincRNA Interval_113837 chr4 59239174 59241320 + 0 NA Intergenic Intergenic -19804 ENSMUSG00000086952.1 ENSMUSG00000086952 ENSMUST00000124589 Gm12596 lincRNA Interval_139411 chr6 99933151 99934376 + 0 NA intron (ENSMUSG00000107528.1, intron 2 of 2) lincRNA-intron (ENSMUSG00000107528.1, intron 2 of 2) -2214 ENSMUSG00000107528.1 ENSMUSG00000107528 ENSMUST00000204919 Gm44442 lincRNA Interval_166101 chr9 56612122 56613081 + 0 NA exon (ENSMUSG00000097870.2, exon 3 of 3) lincRNA-exon (ENSMUSG00000097870.2, exon 3 of 3) 5908 ENSMUSG00000097870.2 ENSMUSG00000097870 ENSMUST00000181927 Gm26868 lincRNA Interval_92520 chr2 60257630 60258806 + 0 NA intron (ENSMUSG00000060703.12, intron 2 of 5) protein_coding-intron (ENSMUSG00000060703.12, intron 2 of 4) 17356 ENSMUSG00000080198.2 ENSMUSG00000080198 ENSMUST00000116410 Rpl10a-ps4 processed_pseudogene Interval_19601 chr10 105398764 105400888 + 0 NA intron (ENSMUSG00000036019.8, intron 2 of 8) protein_coding-intron (ENSMUSG00000036019.8, intron 2 of 11) -5540 ENSMUSG00000112512.1 ENSMUSG00000112512 ENSMUST00000219124 Gm48203 TEC Interval_120232 chr4 144593155 144593412 + 0 NA Intergenic Intergenic 6039 ENSMUSG00000070610.4 ENSMUSG00000070610 ENSMUST00000118978 Gm13127 processed_pseudogene Interval_146946 chr7 56113221 56114652 + 0 NA intron (ENSMUSG00000030451.16, intron 18 of 18) protein_coding-intron (ENSMUSG00000030451.16, intron 19 of 92) 45952 ENSMUSG00000030451.16 ENSMUSG00000030451 ENSMUST00000205678 Herc2 protein_coding Interval_105702 chr3 88646140 88647298 + 0 NA intron (ENSMUSG00000028059.16, intron 22 of 22) protein_coding-intron (ENSMUSG00000028059.16, intron 21 of 21) 6423 ENSMUSG00000049741.4 ENSMUSG00000049741 ENSMUST00000063119 Rxfp4 protein_coding Interval_71326 chr17 22300310 22301438 + 0 NA intron (ENSMUSG00000117284.1, intron 3 of 5) protein_coding-intron (ENSMUSG00000117284.1, intron 3 of 5) 13963 ENSMUSG00000117284.1 ENSMUSG00000117284 ENSMUST00000233465 Gm7072 protein_coding Interval_76286 chr17 78726831 78727384 + 0 NA intron (ENSMUSG00000024077.15, intron 1 of 17) protein_coding-intron (ENSMUSG00000024077.15, intron 1 of 17) 10089 ENSMUSG00000024077.15 ENSMUSG00000024077 ENSMUST00000145480 Strn protein_coding Interval_64111 chr16 8470311 8471600 + 0 NA exon (ENSMUSG00000039345.16, exon 1 of 1) protein_coding-exon (ENSMUSG00000039345.16, exon 1 of 1) 160 ENSMUSG00000039345.16 ENSMUSG00000039345 ENSMUST00000133208 Mettl22 protein_coding Interval_18767 chr10 90202773 90202961 + 0 NA intron (ENSMUSG00000058589.14, intron 9 of 25) protein_coding-intron (ENSMUSG00000058589.14, intron 9 of 17) -68050 ENSMUSG00000112140.1 ENSMUSG00000112140 ENSMUST00000217774 Gm5780 processed_pseudogene Interval_17659 chr10 78589352 78589558 + 0 NA exon (ENSMUSG00000032714.6, exon 3 of 8) protein_coding-exon (ENSMUSG00000032714.6, exon 3 of 8) -2258 ENSMUSG00000112021.1 ENSMUSG00000112021 ENSMUST00000218641 Gm30346 TEC Interval_119826 chr4 140239751 140239990 + 0 NA intron (ENSMUSG00000040972.8, intron 1 of 9) protein_coding-intron (ENSMUSG00000040972.8, intron 1 of 9) 6914 ENSMUSG00000040972.8 ENSMUSG00000040972 ENSMUST00000039331 Igsf21 protein_coding Interval_8021 chr1 135248386 135249134 + 0 NA intron (ENSMUSG00000097680.1, intron 1 of 2) antisense-intron (ENSMUSG00000097680.1, intron 1 of 2) 199 ENSMUSG00000097680.1 ENSMUSG00000097680 ENSMUST00000180981 Gm26642 antisense Interval_160585 chr8 110861341 110862303 + 0 NA intron (ENSMUSG00000031753.16, intron 8 of 17) protein_coding-intron (ENSMUSG00000031753.16, intron 8 of 18) 14771 ENSMUSG00000031753.16 ENSMUSG00000031753 ENSMUST00000172497 Cog4 protein_coding Interval_132438 chr5 144912641 144914035 + 0 NA intron (ENSMUSG00000038780.14, intron 1 of 18) protein_coding-intron (ENSMUSG00000038780.14, intron 1 of 17) -15344 ENSMUSG00000038780.14 ENSMUSG00000038780 ENSMUST00000198621 Smurf1 protein_coding Interval_118386 chr4 131028383 131028583 + 0 NA Intergenic Intergenic -18009 ENSMUSG00000086262.7 ENSMUSG00000086262 ENSMUST00000153810 A930031H19Rik lincRNA Interval_151638 chr7 125581057 125582144 + 0 NA Intergenic Intergenic -9483 ENSMUSG00000108524.1 ENSMUSG00000108524 ENSMUST00000205394 Gm44876 antisense Interval_161136 chr8 117699658 117702312 + 0 NA promoter-TSS (ENSMUSG00000031844.8) protein_coding-promoter-TSS (ENSMUSG00000031844.8) -11585 ENSMUSG00000110520.1 ENSMUSG00000110520 ENSMUST00000212366 Gm45776 TEC Interval_102893 chr3 32586213 32586475 + 0 NA intron (ENSMUSG00000027669.14, intron 10 of 10) protein_coding-intron (ENSMUSG00000027669.14, intron 10 of 10) 12126 ENSMUSG00000027668.13 ENSMUSG00000027668 ENSMUST00000195334 Mfn1 protein_coding Interval_61804 chr15 84260217 84261052 + 0 NA intron (ENSMUSG00000022438.6, intron 1 of 4) protein_coding-intron (ENSMUSG00000022438.6, intron 1 of 12) 3494 ENSMUSG00000022438.6 ENSMUSG00000022438 ENSMUST00000131158 Parvb protein_coding Interval_155520 chr8 34077914 34078087 + 0 NA Intergenic Intergenic 17038 ENSMUSG00000031516.11 ENSMUSG00000031516 ENSMUST00000143411 Dctn6 protein_coding Interval_107663 chr3 109732641 109733012 + 0 NA Intergenic Intergenic 85302 ENSMUSG00000033721.16 ENSMUSG00000033721 ENSMUST00000148866 Vav3 protein_coding Interval_53195 chr14 55059464 55060179 + 0 NA TTS (ENSMUSG00000040721.9) protein_coding-TTS (ENSMUSG00000040721.9) 4328 ENSMUSG00000100162.2 ENSMUSG00000100162 ENSMUST00000185121 Gm20687 antisense Interval_30484 chr11 94656335 94656718 + 0 NA exon (ENSMUSG00000024414.13, exon 2 of 4) protein_coding-exon (ENSMUSG00000024414.13, exon 2 of 4) 2750 ENSMUSG00000024414.13 ENSMUSG00000024414 ENSMUST00000125148 Mrpl27 protein_coding Interval_56546 chr14 120267285 120267564 + 0 NA Intergenic Intergenic -111817 ENSMUSG00000022139.17 ENSMUSG00000022139 ENSMUST00000227153 Mbnl2 protein_coding Interval_152871 chr7 139373055 139373267 + 0 NA Intergenic Intergenic -76296 ENSMUSG00000110115.1 ENSMUSG00000110115 ENSMUST00000209810 Gm32486 lincRNA Interval_157301 chr8 69138137 69139139 + 0 NA exon (ENSMUSG00000036306.13, exon 2 of 3) protein_coding-exon (ENSMUSG00000036306.13, exon 2 of 3) 43592 ENSMUSG00000036306.13 ENSMUSG00000036306 ENSMUST00000184961 Lzts1 protein_coding Interval_74805 chr17 56646603 56646829 + 0 NA intron (ENSMUSG00000040828.10, intron 7 of 21) protein_coding-intron (ENSMUSG00000040828.10, intron 7 of 21) -5066 ENSMUSG00000040828.10 ENSMUSG00000040828 ENSMUST00000233947 Catsperd protein_coding Interval_121141 chr4 153453005 153453239 + 0 NA intron (ENSMUSG00000039546.9, intron 1 of 5) protein_coding-intron (ENSMUSG00000039546.9, intron 1 of 5) 29057 ENSMUSG00000039546.9 ENSMUSG00000039546 ENSMUST00000149177 Ajap1 protein_coding Interval_65287 chr16 21238870 21239157 + 0 NA intron (ENSMUSG00000116843.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000116843.1, intron 1 of 2) 518 ENSMUSG00000116843.1 ENSMUSG00000116843 ENSMUST00000231454 Gm49750 lincRNA Interval_150635 chr7 112985262 112986733 + 0 NA intron (ENSMUSG00000110207.1, intron 1 of 3) lincRNA-intron (ENSMUSG00000110207.1, intron 1 of 3) 2094 ENSMUSG00000110207.1 ENSMUSG00000110207 ENSMUST00000210768 Gm33586 lincRNA Interval_20371 chr10 117155250 117155861 + 0 NA Intergenic Intergenic -7060 ENSMUSG00000020170.4 ENSMUSG00000020170 ENSMUST00000219104 Frs2 protein_coding Interval_163594 chr9 22396942 22397340 + 0 NA Intergenic Intergenic -4445 ENSMUSG00000110873.1 ENSMUSG00000110873 ENSMUST00000213730 Gm48652 processed_pseudogene Interval_114222 chr4 68836161 68836588 + 0 NA intron (ENSMUSG00000028351.5, intron 1 of 3) protein_coding-intron (ENSMUSG00000028351.5, intron 3 of 7) 5033 ENSMUSG00000028351.5 ENSMUSG00000028351 ENSMUST00000140572 Brinp1 protein_coding Interval_167380 chr9 67986757 67987335 + 0 NA TTS (ENSMUSG00000035284.10) protein_coding-TTS (ENSMUSG00000035284.10) 38668 ENSMUSG00000111841.1 ENSMUSG00000111841 ENSMUST00000216827 Gm20745 lincRNA Interval_49284 chr13 110189793 110190330 + 0 NA intron (ENSMUSG00000021700.10, intron 2 of 3) protein_coding-intron (ENSMUSG00000021700.10, intron 2 of 4) 90089 ENSMUSG00000021700.10 ENSMUSG00000021700 ENSMUST00000226040 Rab3c protein_coding Interval_107033 chr3 103070741 103071629 + 0 NA promoter-TSS (ENSMUSG00000104671.1) lincRNA-promoter-TSS (ENSMUSG00000104671.1) 11 ENSMUSG00000104671.1 ENSMUSG00000104671 ENSMUST00000196302 Gm43062 lincRNA Interval_52710 chr14 48845068 48845761 + 0 NA intron (ENSMUSG00000098682.8, intron 3 of 3) lincRNA-intron (ENSMUSG00000098682.8, intron 3 of 3) -10880 ENSMUSG00000115380.1 ENSMUSG00000115380 ENSMUST00000226725 Gm46453 processed_pseudogene Interval_26186 chr11 54958466 54959002 + 0 NA intron (ENSMUSG00000020400.17, intron 1 of 18) protein_coding-intron (ENSMUSG00000020400.17, intron 1 of 17) -2687 ENSMUSG00000020400.17 ENSMUSG00000020400 ENSMUST00000132776 Tnip1 protein_coding Interval_172331 chrX 13070562 13072971 + 0 NA intron (ENSMUSG00000031010.17, intron 1 of 14) protein_coding-intron (ENSMUSG00000031010.17, intron 1 of 44) 29715 ENSMUSG00000087424.1 ENSMUSG00000087424 ENSMUST00000130099 5730405O15Rik processed_transcript Interval_75245 chr17 65324103 65325481 + 0 NA intron (ENSMUSG00000045036.15, intron 11 of 12) protein_coding-intron (ENSMUSG00000045036.15, intron 14 of 15) 71498 ENSMUSG00000117012.1 ENSMUSG00000117012 ENSMUST00000232744 Gm18992 processed_pseudogene Interval_18390 chr10 85496135 85496479 + 0 NA intron (ENSMUSG00000020042.15, intron 1 of 16) protein_coding-intron (ENSMUSG00000020042.15, intron 1 of 9) -148896 ENSMUSG00000020042.15 ENSMUSG00000020042 ENSMUST00000145433 Btbd11 protein_coding Interval_115203 chr4 94425087 94425402 + 0 NA intron (ENSMUSG00000085931.1, intron 1 of 5) lincRNA-intron (ENSMUSG00000085931.1, intron 1 of 5) 344 ENSMUSG00000085931.1 ENSMUSG00000085931 ENSMUST00000126270 Gm12648 lincRNA Interval_148334 chr7 80567488 80568812 + 0 NA Intergenic Intergenic 35633 ENSMUSG00000108643.1 ENSMUSG00000108643 ENSMUST00000206056 Gm44931 TEC Interval_104299 chr3 63068051 63068878 + 0 NA Intergenic Intergenic -83753 ENSMUSG00000089175.1 ENSMUSG00000089175 ENSMUST00000158550 Gm22433 scaRNA Interval_20406 chr10 117384254 117384479 + 0 NA Intergenic Intergenic -5656 ENSMUSG00000112728.1 ENSMUSG00000112728 ENSMUST00000219525 Gm48903 lincRNA Interval_68287 chr16 72596435 72596963 + 0 NA intron (ENSMUSG00000022883.11, intron 1 of 28) protein_coding-intron (ENSMUSG00000022883.11, intron 1 of 1) -224258 ENSMUSG00000116910.1 ENSMUSG00000116910 ENSMUST00000232381 Gm49670 processed_pseudogene Interval_68150 chr16 65751327 65751980 + 0 NA Intergenic Intergenic -41718 ENSMUSG00000116622.1 ENSMUSG00000116622 ENSMUST00000231905 Gm5221 processed_pseudogene Interval_23766 chr11 26035858 26036094 + 0 NA intron (ENSMUSG00000032985.15, intron 1 of 5) protein_coding-intron (ENSMUSG00000032985.15, intron 1 of 6) -166264 ENSMUSG00000099015.1 ENSMUSG00000099015 ENSMUST00000185114 Mir6372 miRNA Interval_74782 chr17 56507118 56508100 + 0 NA Intergenic Intergenic 4822 ENSMUSG00000044526.3 ENSMUSG00000044526 ENSMUST00000052211 Znrf4 protein_coding Interval_100273 chr2 168106738 168107301 + 0 NA Intergenic Intergenic -7858 ENSMUSG00000118526.2 ENSMUSG00000118526 ENSMUST00000239040 AL831766.1 unitary_pseudogene Interval_118882 chr4 134245002 134246078 + 0 NA promoter-TSS (ENSMUSG00000028840.10) protein_coding-promoter-TSS (ENSMUSG00000028840.10) 2 ENSMUSG00000028840.10 ENSMUSG00000028840 ENSMUST00000129183 Zfp593 protein_coding Interval_20985 chr10 123022243 123022542 + 0 NA intron (ENSMUSG00000034602.15, intron 9 of 22) protein_coding-intron (ENSMUSG00000034602.15, intron 21 of 33) 7927 ENSMUSG00000034602.15 ENSMUSG00000034602 ENSMUST00000219203 Mon2 protein_coding Interval_83754 chr19 4403616 4403895 + 0 NA Intergenic Intergenic -35568 ENSMUSG00000087132.8 ENSMUSG00000087132 ENSMUST00000136632 A930001C03Rik processed_transcript Interval_149038 chr7 92607889 92608290 + 0 NA TTS (ENSMUSG00000041343.19) protein_coding-TTS (ENSMUSG00000041343.19) 28171 ENSMUSG00000041343.19 ENSMUSG00000041343 ENSMUST00000207151 Ankrd42 protein_coding Interval_111058 chr4 11550160 11550391 + 0 NA exon (ENSMUSG00000040720.15, exon 24 of 24) protein_coding-exon (ENSMUSG00000040720.15, exon 24 of 24) -26368 ENSMUSG00000078773.11 ENSMUSG00000078773 ENSMUST00000144499 Rad54b protein_coding Interval_146422 chr7 45797109 45799162 + 0 NA intron (ENSMUSG00000062044.16, intron 12 of 15) protein_coding-intron (ENSMUSG00000062044.16, intron 12 of 15) 12753 ENSMUSG00000003269.17 ENSMUSG00000003269 ENSMUST00000210898 Cyth2 protein_coding Interval_117760 chr4 126073700 126073908 + 0 NA intron (ENSMUSG00000042616.8, intron 2 of 10) protein_coding-intron (ENSMUSG00000042616.8, intron 1 of 9) -3545 ENSMUSG00000079942.5 ENSMUSG00000079942 ENSMUST00000116058 Rpl28-ps3 processed_pseudogene Interval_91815 chr2 49827650 49828223 + 0 NA intron (ENSMUSG00000026765.12, intron 1 of 9) protein_coding-intron (ENSMUSG00000026765.12, intron 1 of 9) -14988 ENSMUSG00000085357.1 ENSMUSG00000085357 ENSMUST00000125095 Gm13480 lincRNA Interval_166284 chr9 58038080 58039074 + 0 NA intron (ENSMUSG00000086624.1, intron 4 of 4) protein_coding-intron (ENSMUSG00000037716.15, intron 11 of 18) 6303 ENSMUSG00000086624.1 ENSMUSG00000086624 ENSMUST00000153106 Gm16130 antisense Interval_68520 chr16 78346838 78347744 + 0 NA intron (ENSMUSG00000022865.14, intron 7 of 7) protein_coding-intron (ENSMUSG00000022865.14, intron 7 of 7) -3823 ENSMUSG00000116707.1 ENSMUSG00000116707 ENSMUST00000232286 Gm49590 TEC Interval_926 chr1 13215303 13216825 + 0 NA intron (ENSMUSG00000005886.14, intron 4 of 12) protein_coding-intron (ENSMUSG00000005886.14, intron 4 of 22) 20370 ENSMUSG00000103495.1 ENSMUSG00000103495 ENSMUST00000195811 Gm37409 TEC Interval_27050 chr11 62565802 62566534 + 0 NA exon (ENSMUSG00000085748.1, exon 1 of 2) antisense-exon (ENSMUSG00000085748.1, exon 1 of 2) 215 ENSMUSG00000085748.1 ENSMUSG00000085748 ENSMUST00000155836 Gm12280 antisense Interval_13203 chr10 13012989 13014453 + 0 NA Intergenic Intergenic 8378 ENSMUSG00000078348.4 ENSMUSG00000078348 ENSMUST00000105139 Sf3b5 protein_coding Interval_58566 chr15 36173499 36174544 + 0 NA promoter-TSS (ENSMUSG00000045996.12) protein_coding-promoter-TSS (ENSMUSG00000045996.12) 11 ENSMUSG00000045996.12 ENSMUSG00000045996 ENSMUST00000057177 Polr2k protein_coding Interval_76604 chr17 82331303 82331872 + 0 NA Intergenic Intergenic -23806 ENSMUSG00000117643.1 ENSMUSG00000117643 ENSMUST00000234825 Gm9390 processed_pseudogene Interval_127822 chr5 108038168 108038393 + 0 NA Intergenic Intergenic 17636 ENSMUSG00000096920.1 ENSMUSG00000096920 ENSMUST00000180714 Rps19-ps8 processed_pseudogene Interval_43953 chr13 38344678 38347515 + 0 NA promoter-TSS (ENSMUSG00000039004.6) protein_coding-promoter-TSS (ENSMUSG00000039004.6) -57 ENSMUSG00000039004.6 ENSMUSG00000039004 ENSMUST00000223628 Bmp6 protein_coding Interval_137639 chr6 77049864 77051218 + 0 NA intron (ENSMUSG00000063063.12, intron 2 of 7) protein_coding-intron (ENSMUSG00000063063.12, intron 9 of 17) 93402 ENSMUSG00000063063.12 ENSMUSG00000063063 ENSMUST00000160252 Ctnna2 protein_coding Interval_92449 chr2 59779450 59780887 + 0 NA intron (ENSMUSG00000035168.16, intron 1 of 1) protein_coding-intron (ENSMUSG00000035168.16, intron 7 of 26) -25900 ENSMUSG00000035168.16 ENSMUSG00000035168 ENSMUST00000147650 Tanc1 protein_coding Interval_47834 chr13 93637357 93637792 + 0 NA promoter-TSS (ENSMUSG00000074768.6) protein_coding-promoter-TSS (ENSMUSG00000074768.6) -8 ENSMUSG00000074768.6 ENSMUSG00000074768 ENSMUST00000124193 Bhmt protein_coding Interval_102314 chr3 21821403 21821637 + 0 NA Intergenic Intergenic -58989 ENSMUSG00000103441.1 ENSMUSG00000103441 ENSMUST00000193217 7530428D23Rik transcribed_processed_pseudogene Interval_112431 chr4 41226461 41226977 + 0 NA intron (ENSMUSG00000028433.14, intron 6 of 8) protein_coding-intron (ENSMUSG00000028433.14, intron 6 of 28) -12866 ENSMUSG00000093562.1 ENSMUSG00000093562 ENSMUST00000177331 Gm23090 snoRNA Interval_108789 chr3 131285120 131286805 + 0 NA promoter-TSS (ENSMUSG00000106268.1) processed_pseudogene-promoter-TSS (ENSMUSG00000106268.1) -818 ENSMUSG00000106268.1 ENSMUSG00000106268 ENSMUST00000198141 Gm18492 processed_pseudogene Interval_70943 chr17 16505447 16505699 + 0 NA Intergenic Intergenic -51673 ENSMUSG00000116757.1 ENSMUSG00000116757 ENSMUST00000231695 Gm4786 processed_pseudogene Interval_78899 chr18 21309808 21310764 + 0 NA intron (ENSMUSG00000117632.1, intron 2 of 2) lincRNA-intron (ENSMUSG00000117632.1, intron 2 of 2) -7841 ENSMUSG00000117357.1 ENSMUSG00000117357 ENSMUST00000234791 AC158774.1 transcribed_processed_pseudogene Interval_23759 chr11 25970189 25970884 + 0 NA intron (ENSMUSG00000032985.15, intron 2 of 2) protein_coding-intron (ENSMUSG00000032985.15, intron 2 of 6) -201395 ENSMUSG00000032985.15 ENSMUSG00000032985 ENSMUST00000125987 5730522E02Rik protein_coding Interval_82496 chr18 74607750 74608518 + 0 NA intron (ENSMUSG00000025885.18, intron 4 of 4) protein_coding-intron (ENSMUSG00000025885.18, intron 4 of 38) -77010 ENSMUSG00000086333.1 ENSMUSG00000086333 ENSMUST00000137034 1700120E14Rik antisense Interval_43648 chr13 34440237 34440826 + 0 NA Intergenic Intergenic -14100 ENSMUSG00000114170.1 ENSMUSG00000114170 ENSMUST00000222063 Gm47120 processed_pseudogene Interval_163104 chr9 15292353 15292589 + 0 NA intron (ENSMUSG00000031938.15, intron 4 of 7) protein_coding-intron (ENSMUSG00000031938.15, intron 4 of 7) 9043 ENSMUSG00000031938.15 ENSMUSG00000031938 ENSMUST00000215741 4931406C07Rik protein_coding Interval_109245 chr3 138222500 138224057 + 0 NA TTS (ENSMUSG00000055301.8) protein_coding-TTS (ENSMUSG00000055301.8) 1807 ENSMUSG00000055301.8 ENSMUSG00000055301 ENSMUST00000196133 Adh7 protein_coding Interval_26536 chr11 58613124 58613453 + 0 NA intron (ENSMUSG00000037145.14, intron 1 of 1) protein_coding-intron (ENSMUSG00000037145.14, intron 1 of 5) 197 ENSMUSG00000037145.14 ENSMUSG00000037145 ENSMUST00000126695 2210407C18Rik protein_coding Interval_12325 chr1 191759647 191759938 + 0 NA intron (ENSMUSG00000026623.16, intron 4 of 4) protein_coding-intron (ENSMUSG00000026623.16, intron 4 of 7) 2511 ENSMUSG00000095504.1 ENSMUSG00000095504 ENSMUST00000180108 Gm22446 snRNA Interval_59995 chr15 63560959 63561218 + 0 NA intron (ENSMUSG00000115520.2, intron 2 of 8) lincRNA-intron (ENSMUSG00000115520.2, intron 2 of 8) -68795 ENSMUSG00000115377.1 ENSMUSG00000115377 ENSMUST00000227647 Gm4942 processed_pseudogene Interval_139167 chr6 96749942 96750335 + 0 NA Intergenic Intergenic -189274 ENSMUSG00000077598.1 ENSMUSG00000077598 ENSMUST00000104410 Gm26011 snRNA Interval_148494 chr7 81744291 81744693 + 0 NA TTS (ENSMUSG00000109519.1) processed_pseudogene-TTS (ENSMUSG00000109519.1) 2147 ENSMUSG00000109519.1 ENSMUSG00000109519 ENSMUST00000207607 Gm18806 processed_pseudogene Interval_130504 chr5 128455713 128456235 + 0 NA Intergenic Intergenic 7070 ENSMUSG00000104727.1 ENSMUSG00000104727 ENSMUST00000199898 Gm42500 lincRNA Interval_110075 chr3 153044603 153044942 + 0 NA Intergenic Intergenic -62720 ENSMUSG00000039037.5 ENSMUSG00000039037 ENSMUST00000161757 St6galnac5 protein_coding Interval_94410 chr2 90830535 90830813 + 0 NA intron (ENSMUSG00000040812.14, intron 19 of 21) protein_coding-intron (ENSMUSG00000040812.14, intron 19 of 21) -16557 ENSMUSG00000027282.17 ENSMUSG00000027282 ENSMUST00000142350 Mtch2 protein_coding Interval_30101 chr11 89186630 89187766 + 0 NA Intergenic Intergenic -50432 ENSMUSG00000089485.1 ENSMUSG00000089485 ENSMUST00000158860 Gm24734 misc_RNA Interval_140811 chr6 121529131 121529986 + 0 NA Intergenic Intergenic -8638 ENSMUSG00000107923.1 ENSMUSG00000107923 ENSMUST00000205071 Gm43922 processed_pseudogene Interval_124550 chr5 50318594 50319579 + 0 NA intron (ENSMUSG00000105020.1, intron 4 of 4) unprocessed_pseudogene-intron (ENSMUSG00000105020.1, intron 4 of 4) -28600 ENSMUSG00000095857.1 ENSMUSG00000095857 ENSMUST00000179376 Gm22618 snRNA Interval_9547 chr1 159271980 159272540 + 0 NA exon (ENSMUSG00000040782.12, exon 1 of 1) protein_coding-exon (ENSMUSG00000040782.12, exon 1 of 1) 36550 ENSMUSG00000103572.1 ENSMUSG00000103572 ENSMUST00000193750 Gm37115 TEC Interval_115079 chr4 89310201 89311261 + 0 NA exon (ENSMUSG00000073802.5, exon 1 of 2) protein_coding-exon (ENSMUSG00000073802.5, exon 1 of 2) 308 ENSMUSG00000073802.5 ENSMUSG00000073802 ENSMUST00000097981 Cdkn2b protein_coding Interval_41701 chr12 117865050 117865252 + 0 NA exon (ENSMUSG00000021175.15, exon 2 of 10) protein_coding-exon (ENSMUSG00000021175.15, exon 2 of 10) 21263 ENSMUSG00000021175.15 ENSMUSG00000021175 ENSMUST00000177339 Cdca7l protein_coding Interval_71902 chr17 26894609 26896147 + 0 NA TTS (ENSMUSG00000118147.1) sense_overlapping-TTS (ENSMUSG00000118147.1) -9176 ENSMUSG00000078838.3 ENSMUSG00000078838 ENSMUST00000108741 Gm17382 lincRNA Interval_135835 chr6 47798818 47799683 + 0 NA exon (ENSMUSG00000025823.9, exon 8 of 10) protein_coding-exon (ENSMUSG00000025823.9, exon 8 of 10) 4402 ENSMUSG00000076060.1 ENSMUSG00000076060 ENSMUST00000102106 Mir704 miRNA Interval_117744 chr4 125975043 125975859 + 0 NA Intergenic Intergenic -49275 ENSMUSG00000028859.14 ENSMUSG00000028859 ENSMUST00000140426 Csf3r protein_coding Interval_118491 chr4 132018227 132019023 + 0 NA intron (ENSMUSG00000028906.17, intron 1 of 20) protein_coding-intron (ENSMUSG00000028906.17, intron 1 of 20) -26336 ENSMUSG00000098577.1 ENSMUSG00000098577 ENSMUST00000184484 Gm27445 miRNA Interval_120910 chr4 151494949 151495378 + 0 NA intron (ENSMUSG00000014592.21, intron 5 of 7) protein_coding-intron (ENSMUSG00000014592.21, intron 4 of 23) 118693 ENSMUSG00000085593.1 ENSMUSG00000085593 ENSMUST00000129097 4930589P08Rik antisense Interval_103288 chr3 38169853 38170281 + 0 NA Intergenic Intergenic 38052 ENSMUSG00000106002.1 ENSMUSG00000106002 ENSMUST00000197658 5430434I15Rik lincRNA Interval_168237 chr9 78113109 78113770 + 0 NA TTS (ENSMUSG00000009828.15) protein_coding-TTS (ENSMUSG00000009828.15) 596 ENSMUSG00000009828.15 ENSMUSG00000009828 ENSMUST00000142402 Cilk1 protein_coding Interval_125064 chr5 64206598 64206841 + 0 NA intron (ENSMUSG00000029174.18, intron 3 of 20) protein_coding-intron (ENSMUSG00000029174.18, intron 2 of 21) -15732 ENSMUSG00000083435.2 ENSMUSG00000083435 ENSMUST00000119516 Gm15824 processed_pseudogene Interval_1531 chr1 24938979 24939971 + 0 NA Intergenic Intergenic 25683 ENSMUSG00000100483.1 ENSMUSG00000100483 ENSMUST00000189477 Gm28237 lincRNA Interval_32589 chr11 108934605 108936617 + 0 NA intron (ENSMUSG00000000142.15, intron 2 of 8) protein_coding-intron (ENSMUSG00000000142.15, intron 3 of 10) 6404 ENSMUSG00000086268.1 ENSMUSG00000086268 ENSMUST00000143435 Gm11670 antisense Interval_58365 chr15 33619056 33619312 + 0 NA intron (ENSMUSG00000115779.1, intron 5 of 5) antisense-intron (ENSMUSG00000115779.1, intron 5 of 5) -29448 ENSMUSG00000088062.1 ENSMUSG00000088062 ENSMUST00000157437 Gm24476 rRNA Interval_78680 chr18 16961733 16962540 + 0 NA Intergenic Intergenic -56940 ENSMUSG00000087170.7 ENSMUSG00000087170 ENSMUST00000136956 1700001G01Rik lincRNA Interval_38895 chr12 83655207 83656823 + 0 NA intron (ENSMUSG00000010608.15, intron 5 of 17) protein_coding-intron (ENSMUSG00000010608.15, intron 6 of 18) -6961 ENSMUSG00000010608.15 ENSMUSG00000010608 ENSMUST00000183181 Rbm25 protein_coding Interval_1820 chr1 34005157 34007739 + 0 NA intron (ENSMUSG00000026131.20, intron 2 of 32) protein_coding-intron (ENSMUSG00000026131.20, intron 1 of 5) -24946 ENSMUSG00000084506.1 ENSMUSG00000084506 ENSMUST00000122557 Gm23792 snRNA Interval_70217 chr17 6765702 6766604 + 0 NA intron (ENSMUSG00000052397.8, intron 1 of 12) protein_coding-intron (ENSMUSG00000052397.8, intron 1 of 12) -23332 ENSMUSG00000052397.8 ENSMUSG00000052397 ENSMUST00000131131 Ezr protein_coding Interval_75021 chr17 61090673 61091120 + 0 NA Intergenic Intergenic 74278 ENSMUSG00000117320.1 ENSMUSG00000117320 ENSMUST00000232876 Gm18070 processed_pseudogene Interval_148734 chr7 84749174 84750280 + 0 NA intron (ENSMUSG00000085236.3, intron 2 of 4) antisense-intron (ENSMUSG00000085236.3, intron 2 of 4) -3400 ENSMUSG00000085236.3 ENSMUSG00000085236 ENSMUST00000168496 2610206C17Rik antisense Interval_53461 chr14 57671480 57671859 + 0 NA intron (ENSMUSG00000114942.1, intron 6 of 8) protein_coding-intron (ENSMUSG00000114942.1, intron 6 of 8) -6239 ENSMUSG00000021952.16 ENSMUSG00000021952 ENSMUST00000173638 Xpo4 protein_coding Interval_856 chr1 12718001 12719063 + 0 NA promoter-TSS (ENSMUSG00000016918.15) protein_coding-promoter-TSS (ENSMUSG00000016918.15) -932 ENSMUSG00000016918.15 ENSMUSG00000016918 ENSMUST00000185780 Sulf1 protein_coding Interval_70045 chr17 4967242 4967570 + 0 NA Intergenic Intergenic -20592 ENSMUSG00000116551.1 ENSMUSG00000116551 ENSMUST00000232522 Gm41517 lincRNA Interval_141484 chr6 128549470 128549742 + 0 NA intron (ENSMUSG00000047228.9, intron 4 of 4) protein_coding-intron (ENSMUSG00000047228.9, intron 26 of 35) 3672 ENSMUSG00000047228.9 ENSMUSG00000047228 ENSMUST00000203129 A2ml1 protein_coding Interval_91458 chr2 39004715 39005871 + 0 NA promoter-TSS (ENSMUSG00000062997.6) protein_coding-promoter-TSS (ENSMUSG00000062997.6) -250 ENSMUSG00000062997.6 ENSMUSG00000062997 ENSMUST00000126246 Rpl35 protein_coding Interval_113636 chr4 57177285 57177865 + 0 NA Intergenic Intergenic 5504 ENSMUSG00000085967.1 ENSMUSG00000085967 ENSMUST00000152074 Gm12530 antisense Interval_142782 chr6 145620703 145621384 + 0 NA intron (ENSMUSG00000067338.6, intron 4 of 4) protein_coding-intron (ENSMUSG00000067338.6, intron 4 of 4) 5286 ENSMUSG00000067338.6 ENSMUSG00000067338 ENSMUST00000087445 Tuba3b protein_coding Interval_99508 chr2 162807811 162808077 + 0 NA Intergenic Intergenic 2354 ENSMUSG00000082296.1 ENSMUSG00000082296 ENSMUST00000121144 Gm11450 processed_pseudogene Interval_80400 chr18 41858682 41858983 + 0 NA intron (ENSMUSG00000117745.1, intron 1 of 3) lincRNA-intron (ENSMUSG00000117745.1, intron 1 of 3) 16002 ENSMUSG00000117745.1 ENSMUSG00000117745 ENSMUST00000235677 Gm50410 lincRNA Interval_81463 chr18 60911237 60912436 + 0 NA promoter-TSS (ENSMUSG00000036412.5) protein_coding-promoter-TSS (ENSMUSG00000036412.5) 56 ENSMUSG00000036412.5 ENSMUSG00000036412 ENSMUST00000040359 Arsi protein_coding Interval_111542 chr4 22719335 22719843 + 0 NA Intergenic Intergenic 15532 ENSMUSG00000080762.1 ENSMUSG00000080762 ENSMUST00000121885 Gm11879 processed_pseudogene Interval_91545 chr2 42569656 42569944 + 0 NA intron (ENSMUSG00000049252.17, intron 1 of 2) protein_coding-intron (ENSMUSG00000049252.17, intron 1 of 90) 83126 ENSMUSG00000049252.17 ENSMUSG00000049252 ENSMUST00000142688 Lrp1b protein_coding Interval_52575 chr14 47597948 47598635 + 0 NA Intergenic Intergenic 28765 ENSMUSG00000115571.1 ENSMUSG00000115571 ENSMUST00000228790 Gm6616 processed_pseudogene Interval_43746 chr13 35967800 35969886 + 0 NA TTS (ENSMUSG00000050423.11) protein_coding-TTS (ENSMUSG00000050423.11) -3835 ENSMUSG00000114647.1 ENSMUSG00000114647 ENSMUST00000223592 Gm30127 antisense Interval_87369 chr19 47984306 47984487 + 0 NA intron (ENSMUSG00000046585.9, intron 13 of 17) protein_coding-intron (ENSMUSG00000046585.9, intron 13 of 17) 46721 ENSMUSG00000046585.9 ENSMUSG00000046585 ENSMUST00000066308 Cfap58 protein_coding Interval_65411 chr16 22199999 22201053 + 0 NA Intergenic Intergenic -23718 ENSMUSG00000064686.1 ENSMUSG00000064686 ENSMUST00000082752 Gm25810 snRNA Interval_66840 chr16 38005544 38005739 + 0 NA exon (ENSMUSG00000046961.8, exon 10 of 10) protein_coding-exon (ENSMUSG00000046961.8, exon 10 of 10) 25554 ENSMUSG00000065188.1 ENSMUSG00000065188 ENSMUST00000083254 Gm25140 snRNA Interval_9618 chr1 160282042 160282655 + 0 NA intron (ENSMUSG00000104302.1, intron 2 of 4) protein_coding-intron (ENSMUSG00000026721.16, intron 19 of 20) 13624 ENSMUSG00000089204.1 ENSMUSG00000089204 ENSMUST00000158579 Mir1927 miRNA Interval_104952 chr3 79240777 79241200 + 0 NA intron (ENSMUSG00000062232.14, intron 1 of 29) protein_coding-intron (ENSMUSG00000062232.14, intron 1 of 29) 28069 ENSMUSG00000104585.1 ENSMUSG00000104585 ENSMUST00000200412 4921511C10Rik antisense Interval_61173 chr15 79657712 79659500 + 0 NA promoter-TSS (ENSMUSG00000022428.8) protein_coding-promoter-TSS (ENSMUSG00000022428.8) 318 ENSMUSG00000042564.13 ENSMUSG00000042564 ENSMUST00000231126 Fam227a protein_coding Interval_65766 chr16 28212104 28212929 + 0 NA intron (ENSMUSG00000022523.10, intron 3 of 4) protein_coding-intron (ENSMUSG00000022523.10, intron 3 of 4) -20441 ENSMUSG00000022523.10 ENSMUSG00000022523 ENSMUST00000231717 Fgf12 protein_coding Interval_123436 chr5 32520257 32520559 + 0 NA intron (ENSMUSG00000085234.1, intron 2 of 3) antisense-intron (ENSMUSG00000085234.1, intron 2 of 3) 27909 ENSMUSG00000107316.1 ENSMUSG00000107316 ENSMUST00000202965 Gm42964 processed_pseudogene Interval_124943 chr5 61292755 61294014 + 0 NA Intergenic Intergenic 45349 ENSMUSG00000106370.2 ENSMUSG00000106370 ENSMUST00000198954 Gm43382 processed_pseudogene Interval_161258 chr8 119343809 119345604 + 0 NA promoter-TSS (ENSMUSG00000031839.7) protein_coding-promoter-TSS (ENSMUSG00000031839.7) 190 ENSMUSG00000031839.7 ENSMUSG00000031839 ENSMUST00000212795 Hsbp1 protein_coding Interval_63895 chr16 4381245 4382645 + 0 NA intron (ENSMUSG00000005580.11, intron 3 of 11) protein_coding-intron (ENSMUSG00000005580.11, intron 1 of 9) 38553 ENSMUSG00000005580.11 ENSMUSG00000005580 ENSMUST00000005719 Adcy9 protein_coding Interval_28556 chr11 76695066 76696469 + 0 NA intron (ENSMUSG00000046275.2, intron 2 of 2) protein_coding-intron (ENSMUSG00000046275.2, intron 2 of 2) 15959 ENSMUSG00000046275.2 ENSMUSG00000046275 ENSMUST00000062024 Trarg1 protein_coding Interval_70192 chr17 6064225 6065052 + 0 NA TTS (ENSMUSG00000015659.12) protein_coding-TTS (ENSMUSG00000015659.12) -14583 ENSMUSG00000015659.12 ENSMUSG00000015659 ENSMUST00000139542 Serac1 protein_coding Interval_107510 chr3 108200205 108201025 + 0 NA promoter-TSS (ENSMUSG00000048796.7) protein_coding-promoter-TSS (ENSMUSG00000048796.7) 597 ENSMUSG00000048796.7 ENSMUSG00000048796 ENSMUST00000106654 Cyb561d1 protein_coding Interval_90 GL456221.1 101484 101839 + 0 NA NA NA NA NA Interval_43321 chr13 29143473 29143807 + 0 NA Intergenic Intergenic -12882 ENSMUSG00000082730.2 ENSMUSG00000082730 ENSMUST00000121672 Gm11363 processed_pseudogene Interval_124760 chr5 53701322 53701677 + 0 NA intron (ENSMUSG00000029193.7, intron 3 of 4) protein_coding-intron (ENSMUSG00000029193.7, intron 3 of 4) 6061 ENSMUSG00000029193.7 ENSMUSG00000029193 ENSMUST00000202946 Cckar protein_coding Interval_18042 chr10 81507165 81508574 + 0 NA intron (ENSMUSG00000034792.8, intron 4 of 4) protein_coding-intron (ENSMUSG00000034792.8, intron 6 of 6) 3247 ENSMUSG00000076228.1 ENSMUSG00000076228 ENSMUST00000102273 Gm25595 miRNA Interval_128786 chr5 115248694 115248920 + 0 NA intron (ENSMUSG00000041740.16, intron 9 of 15) protein_coding-intron (ENSMUSG00000041740.16, intron 9 of 16) 9085 ENSMUSG00000041740.16 ENSMUSG00000041740 ENSMUST00000200923 Rnf10 protein_coding Interval_77296 chr17 87869062 87869378 + 0 NA Intergenic Intergenic 44147 ENSMUSG00000117466.1 ENSMUSG00000117466 ENSMUST00000234350 Gm50039 lincRNA Interval_50461 chr14 13693489 13694523 + 0 NA Intergenic Intergenic 23130 ENSMUSG00000044772.2 ENSMUSG00000044772 ENSMUST00000061045 Sntn protein_coding Interval_172708 chrX 44789224 44790453 + 0 NA exon (ENSMUSG00000045284.9, exon 1 of 2) protein_coding-exon (ENSMUSG00000045284.9, exon 1 of 2) 323 ENSMUSG00000045284.9 ENSMUSG00000045284 ENSMUST00000060481 Dcaf12l1 protein_coding Interval_108876 chr3 132909819 132910437 + 0 NA intron (ENSMUSG00000040998.18, intron 3 of 10) protein_coding-intron (ENSMUSG00000040998.18, intron 4 of 12) -3769 ENSMUSG00000040998.18 ENSMUSG00000040998 ENSMUST00000132732 Npnt protein_coding Interval_116654 chr4 116397460 116398524 + 0 NA intron (ENSMUSG00000003810.13, intron 2 of 5) protein_coding-intron (ENSMUSG00000003810.13, intron 3 of 28) -26260 ENSMUSG00000003810.13 ENSMUSG00000003810 ENSMUST00000151347 Mast2 protein_coding Interval_131170 chr5 135580989 135581259 + 0 NA Intergenic Intergenic -8075 ENSMUSG00000004814.10 ENSMUSG00000004814 ENSMUST00000201401 Ccl24 protein_coding Interval_29199 chr11 81476047 81476486 + 0 NA intron (ENSMUSG00000020704.13, intron 1 of 9) protein_coding-intron (ENSMUSG00000020704.13, intron 1 of 9) 91253 ENSMUSG00000086971.1 ENSMUSG00000086971 ENSMUST00000141593 4930527B05Rik antisense Interval_21646 chr11 3425888 3426798 + 0 NA intron (ENSMUSG00000020448.16, intron 3 of 5) protein_coding-intron (ENSMUSG00000020448.16, intron 5 of 7) 25991 ENSMUSG00000020448.16 ENSMUSG00000020448 ENSMUST00000144055 Rnf185 protein_coding Interval_10417 chr1 170644037 170645054 + 0 NA promoter-TSS (ENSMUSG00000038463.8) protein_coding-promoter-TSS (ENSMUSG00000038463.8) 13 ENSMUSG00000038463.8 ENSMUSG00000038463 ENSMUST00000046792 Olfml2b protein_coding Interval_169831 chr9 102288740 102288941 + 0 NA intron (ENSMUSG00000032537.15, intron 1 of 4) protein_coding-intron (ENSMUSG00000032537.15, intron 1 of 15) 15104 ENSMUSG00000102702.1 ENSMUSG00000102702 ENSMUST00000193748 Gm37260 TEC Interval_64087 chr16 7639277 7640085 + 0 NA Intergenic Intergenic 69385 ENSMUSG00000115989.1 ENSMUSG00000115989 ENSMUST00000229672 Gm49533 processed_pseudogene Interval_79537 chr18 33157689 33158220 + 0 NA intron (ENSMUSG00000038128.7, intron 9 of 14) protein_coding-intron (ENSMUSG00000038128.7, intron 6 of 10) 55867 ENSMUSG00000024378.9 ENSMUSG00000024378 ENSMUST00000141617 Stard4 protein_coding Interval_85150 chr19 23176525 23176909 + 0 NA Intergenic Intergenic 27286 ENSMUSG00000080626.1 ENSMUSG00000080626 ENSMUST00000116976 Mir1192 miRNA Interval_16726 chr10 67224030 67224622 + 0 NA intron (ENSMUSG00000037876.17, intron 9 of 25) protein_coding-intron (ENSMUSG00000037876.17, intron 9 of 25) 11635 ENSMUSG00000089498.1 ENSMUSG00000089498 ENSMUST00000158873 Gm26359 snRNA Interval_95780 chr2 116111697 116112060 + 0 NA Intergenic Intergenic -35782 ENSMUSG00000103562.1 ENSMUSG00000103562 ENSMUST00000195368 2810405F15Rik TEC Interval_1043 chr1 14312396 14313085 + 0 NA Intergenic Intergenic -8170 ENSMUSG00000025932.14 ENSMUSG00000025932 ENSMUST00000185329 Eya1 protein_coding Interval_163736 chr9 25072278 25073336 + 0 NA Intergenic Intergenic 15757 ENSMUSG00000111751.1 ENSMUSG00000111751 ENSMUST00000215876 Gm48256 lincRNA Interval_152137 chr7 129977837 129978072 + 0 NA intron (ENSMUSG00000108504.1, intron 3 of 3) lincRNA-intron (ENSMUSG00000108504.1, intron 3 of 3) 15789 ENSMUSG00000108504.1 ENSMUSG00000108504 ENSMUST00000206701 Gm4265 lincRNA Interval_74953 chr17 57905901 57906591 + 0 NA intron (ENSMUSG00000038048.8, intron 3 of 23) protein_coding-intron (ENSMUSG00000038048.8, intron 3 of 23) -67025 ENSMUSG00000071052.4 ENSMUSG00000071052 ENSMUST00000095218 Rpl7a-ps5 processed_pseudogene Interval_16265 chr10 61812198 61812586 + 0 NA Intergenic Intergenic -28245 ENSMUSG00000020086.6 ENSMUSG00000020086 ENSMUST00000020283 Macroh2a2 protein_coding Interval_81203 chr18 56387590 56387782 + 0 NA Intergenic Intergenic -2457 ENSMUSG00000117688.1 ENSMUSG00000117688 ENSMUST00000235993 Gm8629 processed_pseudogene Interval_6967 chr1 121449878 121450138 + 0 NA TTS (ENSMUSG00000026339.18) protein_coding-TTS (ENSMUSG00000026339.18) 18933 ENSMUSG00000026339.18 ENSMUSG00000026339 ENSMUST00000152959 Ccdc93 protein_coding Interval_83318 chr18 84162015 84162789 + 0 NA intron (ENSMUSG00000048410.17, intron 2 of 2) protein_coding-intron (ENSMUSG00000048410.17, intron 2 of 2) -40522 ENSMUSG00000118385.1 ENSMUSG00000118385 ENSMUST00000238064 Gm50311 antisense Interval_17742 chr10 79840464 79841603 + 0 NA Intergenic Intergenic -13394 ENSMUSG00000006498.16 ENSMUSG00000006498 ENSMUST00000169580 Ptbp1 protein_coding Interval_52647 chr14 48224894 48226471 + 0 NA intron (ENSMUSG00000021846.9, intron 2 of 2) protein_coding-intron (ENSMUSG00000021846.9, intron 2 of 5) -1519 ENSMUSG00000063885.5 ENSMUSG00000063885 ENSMUST00000181413 Gm6498 transcribed_processed_pseudogene Interval_37036 chr12 56680995 56682145 + 0 NA Intergenic Intergenic -10197 ENSMUSG00000001497.18 ENSMUSG00000001497 ENSMUST00000152848 Pax9 protein_coding Interval_131834 chr5 140217782 140218986 + 0 NA intron (ENSMUSG00000029554.15, intron 2 of 3) protein_coding-intron (ENSMUSG00000029554.15, intron 10 of 17) 8842 ENSMUSG00000087248.7 ENSMUSG00000087248 ENSMUST00000133999 Gm16120 antisense Interval_166500 chr9 60147387 60148098 + 0 NA intron (ENSMUSG00000032289.15, intron 6 of 16) protein_coding-intron (ENSMUSG00000032289.15, intron 7 of 17) -105563 ENSMUSG00000088090.1 ENSMUSG00000088090 ENSMUST00000157465 Gm23668 rRNA Interval_170600 chr9 109167331 109168085 + 0 NA Intergenic Intergenic -5688 ENSMUSG00000047237.13 ENSMUSG00000047237 ENSMUST00000199540 Fbxw21 protein_coding Interval_115930 chr4 106360569 106361307 + 0 NA TTS (ENSMUSG00000028514.15) protein_coding-TTS (ENSMUSG00000028514.15) 44725 ENSMUSG00000028514.15 ENSMUSG00000028514 ENSMUST00000150521 Usp24 protein_coding Interval_22013 chr11 5777501 5778904 + 0 NA intron (ENSMUSG00000083844.8, intron 4 of 6) transcribed_unprocessed_pseudogene-intron (ENSMUSG00000083844.8, intron 4 of 6) -10286 ENSMUSG00000020476.14 ENSMUSG00000020476 ENSMUST00000102928 Dbnl protein_coding Interval_35228 chr12 18523435 18524909 + 0 NA intron (ENSMUSG00000073197.9, intron 1 of 3) protein_coding-intron (ENSMUSG00000073197.9, intron 1 of 3) 9662 ENSMUSG00000073197.9 ENSMUSG00000073197 ENSMUST00000063216 5730507C01Rik protein_coding Interval_143154 chr7 3718744 3719376 + 0 NA intron (ENSMUSG00000058818.13, intron 3 of 11) protein_coding-intron (ENSMUSG00000058818.13, intron 4 of 14) 1302 ENSMUSG00000058818.13 ENSMUSG00000058818 ENSMUST00000137474 Pirb protein_coding Interval_78206 chr18 10113089 10113424 + 0 NA promoter-TSS (ENSMUSG00000024290.9) protein_coding-promoter-TSS (ENSMUSG00000024290.9) -878 ENSMUSG00000024290.9 ENSMUSG00000024290 ENSMUST00000235075 Rock1 protein_coding Interval_27313 chr11 66020388 66020738 + 0 NA intron (ENSMUSG00000056752.16, intron 35 of 68) protein_coding-intron (ENSMUSG00000056752.16, intron 35 of 68) -15368 ENSMUSG00000056752.16 ENSMUSG00000056752 ENSMUST00000142836 Dnah9 protein_coding Interval_157398 chr8 70120766 70121103 + 0 NA promoter-TSS (ENSMUSG00000002341.8) protein_coding-promoter-TSS (ENSMUSG00000002341.8) -61 ENSMUSG00000002341.8 ENSMUSG00000002341 ENSMUST00000002412 Ncan protein_coding Interval_147654 chr7 70731215 70731406 + 0 NA Intergenic Intergenic -21106 ENSMUSG00000089401.1 ENSMUSG00000089401 ENSMUST00000158776 Gm24880 rRNA Interval_148023 chr7 78361437 78361897 + 0 NA intron (ENSMUSG00000059146.12, intron 3 of 3) protein_coding-intron (ENSMUSG00000059146.12, intron 11 of 16) 107371 ENSMUSG00000108788.1 ENSMUSG00000108788 ENSMUST00000206993 4921513I08Rik antisense Interval_13775 chr10 21987927 21989196 + 0 NA intron (ENSMUSG00000019970.15, intron 1 of 11) protein_coding-intron (ENSMUSG00000019970.15, intron 3 of 13) 9889 ENSMUSG00000019970.15 ENSMUSG00000019970 ENSMUST00000135195 Sgk1 protein_coding Interval_40211 chr12 102579016 102580227 + 0 NA intron (ENSMUSG00000057963.9, intron 7 of 9) protein_coding-intron (ENSMUSG00000057963.9, intron 7 of 9) 11789 ENSMUSG00000102953.1 ENSMUSG00000102953 ENSMUST00000192133 Gm37019 TEC Interval_129088 chr5 117334322 117335178 + 0 NA intron (ENSMUSG00000066894.14, intron 2 of 8) protein_coding-intron (ENSMUSG00000066894.14, intron 2 of 8) 11104 ENSMUSG00000066894.14 ENSMUSG00000066894 ENSMUST00000139026 Vsig10 protein_coding Interval_4801 chr1 79106208 79106500 + 0 NA intron (ENSMUSG00000099706.1, intron 2 of 3) lincRNA-intron (ENSMUSG00000099706.1, intron 2 of 3) 118157 ENSMUSG00000099706.1 ENSMUSG00000099706 ENSMUST00000189296 Gm29536 lincRNA Interval_110011 chr3 152447663 152447891 + 0 NA intron (ENSMUSG00000039068.16, intron 3 of 11) protein_coding-intron (ENSMUSG00000039068.16, intron 5 of 13) 51645 ENSMUSG00000039068.16 ENSMUSG00000039068 ENSMUST00000135044 Zzz3 protein_coding Interval_151844 chr7 127075334 127076278 + 0 NA intron (ENSMUSG00000049350.6, intron 1 of 2) protein_coding-intron (ENSMUSG00000049350.6, intron 1 of 4) -3675 ENSMUSG00000064429.1 ENSMUSG00000064429 ENSMUST00000082495 Gm22747 snRNA Interval_13480 chr10 18545367 18546410 + 0 NA promoter-TSS (ENSMUSG00000019853.6) protein_coding-promoter-TSS (ENSMUSG00000019853.6) 176 ENSMUSG00000019853.6 ENSMUSG00000019853 ENSMUST00000214548 Hebp2 protein_coding Interval_118135 chr4 129144396 129145199 + 0 NA TTS (ENSMUSG00000001334.9) protein_coding-TTS (ENSMUSG00000001334.9) 7798 ENSMUSG00000001334.9 ENSMUSG00000001334 ENSMUST00000102600 Fndc5 protein_coding Interval_1480 chr1 23968243 23969054 + 0 NA Intergenic Intergenic -36859 ENSMUSG00000102495.1 ENSMUSG00000102495 ENSMUST00000195143 Gm26524 TEC Interval_80688 chr18 46324643 46326020 + 0 NA Intergenic Intergenic 15098 ENSMUSG00000117742.1 ENSMUSG00000117742 ENSMUST00000236411 4930415P13Rik TEC Interval_108236 chr3 122801297 122802050 + 0 NA intron (ENSMUSG00000106583.1, intron 1 of 3) protein_coding-intron (ENSMUSG00000053965.10, intron 9 of 20) 375 ENSMUSG00000106583.1 ENSMUSG00000106583 ENSMUST00000198879 4930447N08Rik processed_transcript Interval_110269 chr3 155180292 155180937 + 0 NA intron (ENSMUSG00000028182.14, intron 6 of 7) protein_coding-intron (ENSMUSG00000028182.14, intron 6 of 7) 85749 ENSMUSG00000104122.1 ENSMUSG00000104122 ENSMUST00000194899 Gm37482 TEC Interval_79984 chr18 36431998 36432386 + 0 NA intron (ENSMUSG00000024346.6, intron 2 of 2) protein_coding-intron (ENSMUSG00000024346.6, intron 3 of 3) 22332 ENSMUSG00000024346.6 ENSMUSG00000024346 ENSMUST00000237499 Pfdn1 protein_coding Interval_115774 chr4 103836473 103836874 + 0 NA intron (ENSMUSG00000028519.16, intron 1 of 3) protein_coding-intron (ENSMUSG00000028519.16, intron 1 of 9) 102868 ENSMUSG00000080913.1 ENSMUSG00000080913 ENSMUST00000118859 Gm12719 processed_pseudogene Interval_114542 chr4 82399909 82402003 + 0 NA intron (ENSMUSG00000008575.17, intron 2 of 4) protein_coding-intron (ENSMUSG00000008575.17, intron 2 of 11) -38454 ENSMUSG00000084595.1 ENSMUSG00000084595 ENSMUST00000122646 n-R5s188 rRNA Interval_16626 chr10 66522285 66522509 + 0 NA Intergenic Intergenic 38844 ENSMUSG00000077439.1 ENSMUSG00000077439 ENSMUST00000104251 Gm22594 snoRNA Interval_101305 chr2 180272926 180274081 + 0 NA promoter-TSS (ENSMUSG00000038990.14) protein_coding-promoter-TSS (ENSMUSG00000038990.14) -11738 ENSMUSG00000038990.14 ENSMUSG00000038990 ENSMUST00000135301 Cables2 protein_coding Interval_168311 chr9 78595733 78597222 + 0 NA Intergenic Intergenic -8450 ENSMUSG00000049624.14 ENSMUSG00000049624 ENSMUST00000119213 Slc17a5 protein_coding Interval_4862 chr1 80383102 80384574 + 0 NA exon (ENSMUSG00000090637.2, exon 1 of 1) processed_pseudogene-exon (ENSMUSG00000090637.2, exon 1 of 1) 1016 ENSMUSG00000101722.1 ENSMUSG00000101722 ENSMUST00000187121 Gm29125 lincRNA Interval_28039 chr11 72410197 72412124 + 0 NA intron (ENSMUSG00000045667.14, intron 1 of 7) protein_coding-intron (ENSMUSG00000045667.14, intron 1 of 7) -8419 ENSMUSG00000045667.14 ENSMUSG00000045667 ENSMUST00000143345 Smtnl2 protein_coding Interval_94255 chr2 86721093 86721293 + 0 NA Intergenic Intergenic 12508 ENSMUSG00000111711.1 ENSMUSG00000111711 ENSMUST00000214317 Olfr1089 protein_coding Interval_28891 chr11 79097587 79098104 + 0 NA intron (ENSMUSG00000018334.18, intron 1 of 12) protein_coding-intron (ENSMUSG00000018334.18, intron 1 of 18) -38009 ENSMUSG00000018334.18 ENSMUSG00000018334 ENSMUST00000129463 Ksr1 protein_coding Interval_50335 chr14 11898944 11899725 + 0 NA intron (ENSMUSG00000021745.14, intron 2 of 3) protein_coding-intron (ENSMUSG00000021745.14, intron 2 of 29) -5345 ENSMUSG00000114267.1 ENSMUSG00000114267 ENSMUST00000225771 Gm48600 TEC Interval_44537 chr13 45859451 45859720 + 0 NA intron (ENSMUSG00000046876.16, intron 1 of 2) protein_coding-intron (ENSMUSG00000046876.16, intron 2 of 7) -76455 ENSMUSG00000113987.1 ENSMUSG00000113987 ENSMUST00000222376 4930453C13Rik antisense Interval_27234 chr11 64531537 64531973 + 0 NA Intergenic Intergenic 58885 ENSMUSG00000080430.1 ENSMUSG00000080430 ENSMUST00000116780 Gm24275 miRNA Interval_99285 chr2 158666719 158668768 + 0 NA intron (ENSMUSG00000037754.13, intron 1 of 10) protein_coding-intron (ENSMUSG00000037754.13, intron 1 of 10) -28392 ENSMUSG00000037754.13 ENSMUSG00000037754 ENSMUST00000145073 Ppp1r16b protein_coding Interval_96206 chr2 120531380 120531652 + 0 NA TTS (ENSMUSG00000027288.16) protein_coding-TTS (ENSMUSG00000027288.16) 8344 ENSMUSG00000027288.16 ENSMUSG00000027288 ENSMUST00000147353 Zfp106 protein_coding Interval_106132 chr3 93520192 93521390 + 0 NA intron (ENSMUSG00000027907.4, intron 1 of 2) protein_coding-intron (ENSMUSG00000027907.4, intron 1 of 2) 303 ENSMUSG00000027907.4 ENSMUSG00000027907 ENSMUST00000029515 S100a11 protein_coding Interval_114938 chr4 87358988 87359744 + 0 NA Intergenic Intergenic 61004 ENSMUSG00000086512.1 ENSMUSG00000086512 ENSMUST00000146704 Gm12600 lincRNA Interval_82724 chr18 76207216 76207384 + 0 NA Intergenic Intergenic 16883 ENSMUSG00000118294.1 ENSMUSG00000118294 ENSMUST00000237277 Gm9028 processed_pseudogene Interval_109820 chr3 148270358 148270856 + 0 NA Intergenic Intergenic 83611 ENSMUSG00000077441.1 ENSMUSG00000077441 ENSMUST00000104253 Gm23131 snoRNA Interval_28273 chr11 74826206 74826530 + 0 NA exon (ENSMUSG00000010554.14, exon 10 of 10) protein_coding-exon (ENSMUSG00000010554.14, exon 10 of 10) -9958 ENSMUSG00000000282.12 ENSMUSG00000000282 ENSMUST00000132150 Mnt protein_coding Interval_138958 chr6 93829938 93830981 + 0 NA intron (ENSMUSG00000045095.16, intron 2 of 24) protein_coding-intron (ENSMUSG00000045095.16, intron 2 of 21) 36687 ENSMUSG00000088627.1 ENSMUSG00000088627 ENSMUST00000158002 Gm23035 snRNA Interval_46833 chr13 71956566 71957506 + 0 NA promoter-TSS (ENSMUSG00000114038.1) processed_transcript-promoter-TSS (ENSMUSG00000114038.1) 3680 ENSMUSG00000060969.9 ENSMUSG00000060969 ENSMUST00000223460 Irx1 protein_coding Interval_40105 chr12 101311304 101312921 + 0 NA intron (ENSMUSG00000113134.2, intron 12 of 21) transcribed_unprocessed_pseudogene-intron (ENSMUSG00000113134.2, intron 12 of 21) -88414 ENSMUSG00000064424.1 ENSMUSG00000064424 ENSMUST00000082490 Gm22749 snRNA Interval_77488 chr17 90069054 90069761 + 0 NA intron (ENSMUSG00000024109.18, intron 2 of 3) protein_coding-intron (ENSMUSG00000024109.18, intron 19 of 20) -92622 ENSMUSG00000117635.1 ENSMUSG00000117635 ENSMUST00000234603 Gm41653 lincRNA Interval_119559 chr4 138367414 138368641 + 0 NA promoter-TSS (ENSMUSG00000028755.3) protein_coding-promoter-TSS (ENSMUSG00000028755.3) -24378 ENSMUSG00000028755.3 ENSMUSG00000028755 ENSMUST00000030535 Cda protein_coding Interval_19387 chr10 98775357 98775589 + 0 NA Intergenic Intergenic -75763 ENSMUSG00000112647.1 ENSMUSG00000112647 ENSMUST00000217680 Gm5427 lincRNA Interval_67849 chr16 57890348 57890586 + 0 NA intron (ENSMUSG00000116920.1, intron 1 of 3) lincRNA-intron (ENSMUSG00000116920.1, intron 1 of 3) -6328 ENSMUSG00000095926.1 ENSMUSG00000095926 ENSMUST00000157878 Gm24039 snoRNA Interval_109767 chr3 146766217 146767221 + 0 NA intron (ENSMUSG00000005034.15, intron 1 of 9) protein_coding-intron (ENSMUSG00000005034.15, intron 1 of 9) -2149 ENSMUSG00000005034.15 ENSMUSG00000005034 ENSMUST00000196344 Prkacb protein_coding Interval_91722 chr2 48853863 48854099 + 0 NA intron (ENSMUSG00000052155.5, intron 1 of 10) protein_coding-intron (ENSMUSG00000052155.5, intron 1 of 10) -36408 ENSMUSG00000052155.5 ENSMUSG00000052155 ENSMUST00000156681 Acvr2a protein_coding Interval_117033 chr4 119126970 119127210 + 0 NA intron (ENSMUSG00000028645.11, intron 2 of 8) protein_coding-intron (ENSMUSG00000028645.11, intron 2 of 9) -2689 ENSMUSG00000088552.1 ENSMUSG00000088552 ENSMUST00000157927 Mir1957a miRNA Interval_162170 chr8 125681020 125681322 + 0 NA Intergenic Intergenic 11353 ENSMUSG00000050930.5 ENSMUSG00000050930 ENSMUST00000053078 Map10 protein_coding Interval_92797 chr2 65495971 65496613 + 0 NA intron (ENSMUSG00000057182.15, intron 1 of 1) protein_coding-intron (ENSMUSG00000057182.15, intron 16 of 26) -12973 ENSMUSG00000086701.1 ENSMUSG00000086701 ENSMUST00000145994 Gm13595 antisense Interval_87604 chr19 53689069 53691460 + 0 NA intron (ENSMUSG00000043639.15, intron 1 of 13) protein_coding-intron (ENSMUSG00000043639.15, intron 1 of 13) 12958 ENSMUSG00000043639.15 ENSMUSG00000043639 ENSMUST00000161856 Rbm20 protein_coding Interval_51318 chr14 26376786 26377138 + 0 NA promoter-TSS (ENSMUSG00000089978.1) processed_pseudogene-promoter-TSS (ENSMUSG00000089978.1) -790 ENSMUSG00000089978.1 ENSMUSG00000089978 ENSMUST00000160441 Crb1-ps processed_pseudogene Interval_82378 chr18 73453589 73454257 + 0 NA Intergenic Intergenic 79627 ENSMUSG00000065922.1 ENSMUSG00000065922 ENSMUST00000083988 n-R5-8s1 rRNA Interval_61672 chr15 83314571 83315507 + 0 NA intron (ENSMUSG00000054277.8, intron 9 of 15) protein_coding-intron (ENSMUSG00000054277.8, intron 9 of 15) 18228 ENSMUSG00000054277.8 ENSMUSG00000054277 ENSMUST00000227511 Arfgap3 protein_coding Interval_14681 chr10 38965123 38966240 + 0 NA promoter-TSS (ENSMUSG00000019846.11) protein_coding-promoter-TSS (ENSMUSG00000019846.11) 37392 ENSMUSG00000111431.1 ENSMUSG00000111431 ENSMUST00000213395 Gm17779 processed_pseudogene Interval_106686 chr3 98820993 98821455 + 0 NA exon (ENSMUSG00000082185.1, exon 1 of 1) processed_pseudogene-exon (ENSMUSG00000082185.1, exon 1 of 1) 186 ENSMUSG00000082185.1 ENSMUSG00000082185 ENSMUST00000119844 Gm12428 processed_pseudogene Interval_128456 chr5 113407215 113407940 + 0 NA Intergenic Intergenic 50283 ENSMUSG00000053873.1 ENSMUSG00000053873 ENSMUST00000066573 Aym1 protein_coding Interval_125100 chr5 64478236 64479188 + 0 NA intron (ENSMUSG00000105352.4, intron 2 of 3) lincRNA-intron (ENSMUSG00000105352.4, intron 2 of 2) 1704 ENSMUSG00000105352.4 ENSMUSG00000105352 ENSMUST00000196829 C030018K13Rik lincRNA Interval_24705 chr11 36000238 36002001 + 0 NA Intergenic Intergenic 5065 ENSMUSG00000081571.1 ENSMUSG00000081571 ENSMUST00000117261 Gm12125 processed_pseudogene Interval_163966 chr9 29925553 29926605 + 0 NA intron (ENSMUSG00000059974.10, intron 1 of 2) protein_coding-intron (ENSMUSG00000059974.10, intron 1 of 7) 137640 ENSMUSG00000111175.1 ENSMUSG00000111175 ENSMUST00000214849 Gm19640 processed_pseudogene Interval_104798 chr3 73580497 73582185 + 0 NA intron (ENSMUSG00000103428.1, intron 4 of 4) lincRNA-intron (ENSMUSG00000103428.1, intron 4 of 4) -99690 ENSMUSG00000102362.1 ENSMUSG00000102362 ENSMUST00000194514 4930509J09Rik lincRNA Interval_6583 chr1 117587338 117587988 + 0 NA Intergenic Intergenic 9272 ENSMUSG00000101573.1 ENSMUSG00000101573 ENSMUST00000188825 Gm28361 processed_pseudogene Interval_81740 chr18 64288232 64288530 + 0 NA promoter-TSS (ENSMUSG00000118264.1) transcribed_processed_pseudogene-promoter-TSS (ENSMUSG00000118264.1) 23 ENSMUSG00000118264.1 ENSMUSG00000118264 ENSMUST00000235716 Rps15-ps3 transcribed_processed_pseudogene Interval_79406 chr18 31707359 31708152 + 0 NA intron (ENSMUSG00000024260.14, intron 16 of 20) protein_coding-intron (ENSMUSG00000024260.14, intron 16 of 20) -30960 ENSMUSG00000117533.1 ENSMUSG00000117533 ENSMUST00000234849 Gm50060 processed_pseudogene Interval_150839 chr7 115453156 115454067 + 0 NA Intergenic Intergenic 281338 ENSMUSG00000099211.1 ENSMUSG00000099211 ENSMUST00000183778 Gm27684 miRNA Interval_17046 chr10 70841245 70842936 + 0 NA Intergenic Intergenic -4927 ENSMUSG00000112883.1 ENSMUSG00000112883 ENSMUST00000217694 Gm48023 lincRNA Interval_50067 chr14 7784274 7784483 + 0 NA intron (ENSMUSG00000072723.12, intron 3 of 7) transcribed_unprocessed_pseudogene-intron (ENSMUSG00000072723.12, intron 3 of 7) -7077 ENSMUSG00000097169.2 ENSMUSG00000097169 ENSMUST00000181025 Gm26661 TEC Interval_71937 chr17 27105294 27106992 + 0 NA promoter-TSS (ENSMUSG00000042644.9) protein_coding-promoter-TSS (ENSMUSG00000042644.9) -34 ENSMUSG00000042644.9 ENSMUSG00000042644 ENSMUST00000235521 Itpr3 protein_coding Interval_69050 chr16 90312577 90313088 + 0 NA Intergenic Intergenic -2040 ENSMUSG00000116600.1 ENSMUSG00000116600 ENSMUST00000232142 Gm49707 lincRNA Interval_140326 chr6 116508316 116508778 + 0 NA intron (ENSMUSG00000053251.6, intron 1 of 1) protein_coding-intron (ENSMUSG00000053251.6, intron 1 of 1) -5010 ENSMUSG00000053251.6 ENSMUSG00000053251 ENSMUST00000220134 Olfr212 protein_coding Interval_107522 chr3 108291197 108292065 + 0 NA exon (ENSMUSG00000105358.1, exon 1 of 1) TEC-exon (ENSMUSG00000105358.1, exon 1 of 1) 3750 ENSMUSG00000105358.1 ENSMUSG00000105358 ENSMUST00000198943 Gm43099 TEC Interval_139606 chr6 102731790 102732564 + 0 NA Intergenic Intergenic -62207 ENSMUSG00000098533.1 ENSMUSG00000098533 ENSMUST00000183546 Mir6373 miRNA Interval_108490 chr3 127625281 127625984 + 0 NA Intergenic Intergenic -7503 ENSMUSG00000027967.8 ENSMUSG00000027967 ENSMUST00000029587 Neurog2 protein_coding Interval_147532 chr7 68128994 68130266 + 0 NA intron (ENSMUSG00000005533.10, intron 2 of 20) protein_coding-intron (ENSMUSG00000005533.10, intron 2 of 20) -82208 ENSMUSG00000005533.10 ENSMUSG00000005533 ENSMUST00000208871 Igf1r protein_coding Interval_52765 chr14 49556904 49557560 + 0 NA Intergenic Intergenic 16086 ENSMUSG00000089187.1 ENSMUSG00000089187 ENSMUST00000158562 Gm22949 miRNA Interval_129300 chr5 118765440 118766749 + 0 NA TTS (ENSMUSG00000018076.12) protein_coding-TTS (ENSMUSG00000018076.12) 15707 ENSMUSG00000018076.12 ENSMUSG00000018076 ENSMUST00000202787 Med13l protein_coding Interval_21040 chr10 124940133 124940407 + 0 NA Intergenic Intergenic -55713 ENSMUSG00000112283.1 ENSMUSG00000112283 ENSMUST00000219518 Gm36719 lincRNA Interval_131970 chr5 141553611 141553883 + 0 NA intron (ENSMUSG00000039683.16, intron 1 of 9) protein_coding-intron (ENSMUSG00000039683.16, intron 1 of 44) 12502 ENSMUSG00000089164.1 ENSMUSG00000089164 ENSMUST00000158539 Gm24131 snRNA Interval_99002 chr2 156570869 156571382 + 0 NA promoter-TSS (ENSMUSG00000055494.5) lincRNA-promoter-TSS (ENSMUSG00000055494.5) -667 ENSMUSG00000055494.5 ENSMUSG00000055494 ENSMUST00000144818 Gm14168 lincRNA Interval_45637 chr13 56418640 56420568 + 0 NA Intergenic Intergenic -6990 ENSMUSG00000110477.1 ENSMUSG00000110477 ENSMUST00000212844 Gm3045 protein_coding Interval_95380 chr2 107450385 107450690 + 0 NA Intergenic Intergenic 150002 ENSMUSG00000052005.8 ENSMUSG00000052005 ENSMUST00000090043 Gm9864 pseudogene Interval_125169 chr5 65046801 65047483 + 0 NA Intergenic Intergenic 44990 ENSMUSG00000037913.12 ENSMUSG00000037913 ENSMUST00000203117 Tmem156 protein_coding Interval_123464 chr5 32711162 32714445 + 0 NA TTS (ENSMUSG00000106680.1) TEC-TTS (ENSMUSG00000106680.1) 1185 ENSMUSG00000106680.1 ENSMUSG00000106680 ENSMUST00000202098 Gm43852 TEC Interval_11233 chr1 180350804 180351407 + 0 NA intron (ENSMUSG00000038855.10, intron 2 of 7) protein_coding-intron (ENSMUSG00000038855.10, intron 2 of 7) -6544 ENSMUSG00000104388.1 ENSMUSG00000104388 ENSMUST00000193199 Gm37033 TEC Interval_71390 chr17 23186004 23186285 + 0 NA intron (ENSMUSG00000002617.14, intron 1 of 3) protein_coding-intron (ENSMUSG00000002617.14, intron 3 of 5) 5235 ENSMUSG00000002617.14 ENSMUSG00000002617 ENSMUST00000151447 Zfp40 protein_coding Interval_137654 chr6 77661917 77662139 + 0 NA intron (ENSMUSG00000063063.12, intron 3 of 7) protein_coding-intron (ENSMUSG00000063063.12, intron 3 of 17) 33745 ENSMUSG00000107483.1 ENSMUSG00000107483 ENSMUST00000205061 Gm44288 TEC Interval_149778 chr7 101397585 101398021 + 0 NA promoter-TSS (ENSMUSG00000032812.18) protein_coding-promoter-TSS (ENSMUSG00000032812.18) 12195 ENSMUSG00000032812.18 ENSMUSG00000032812 ENSMUST00000124637 Arap1 protein_coding Interval_90000 chr2 27237095 27237615 + 0 NA intron (ENSMUSG00000009614.16, intron 6 of 20) protein_coding-intron (ENSMUSG00000009614.16, intron 6 of 20) -27418 ENSMUSG00000009614.16 ENSMUSG00000009614 ENSMUST00000129975 Sardh protein_coding Interval_115100 chr4 89723260 89724249 + 0 NA Intergenic Intergenic 44318 ENSMUSG00000043753.2 ENSMUSG00000043753 ENSMUST00000052478 Dmrta1 protein_coding Interval_147403 chr7 66491302 66493969 + 0 NA Intergenic Intergenic 50749 ENSMUSG00000109114.1 ENSMUSG00000109114 ENSMUST00000208297 Gm44753 lincRNA Interval_18224 chr10 83900415 83900617 + 0 NA Intergenic Intergenic -1336 ENSMUSG00000112133.1 ENSMUSG00000112133 ENSMUST00000217741 Gm47247 processed_pseudogene Interval_122377 chr5 21803039 21805321 + 0 NA TTS (ENSMUSG00000028932.8) protein_coding-TTS (ENSMUSG00000028932.8) 16337 ENSMUSG00000029015.9 ENSMUSG00000029015 ENSMUST00000150012 Slc26a5 protein_coding Interval_106678 chr3 98427241 98428704 + 0 NA exon (ENSMUSG00000050064.14, exon 3 of 3) protein_coding-exon (ENSMUSG00000050064.14, exon 3 of 3) 21004 ENSMUSG00000106107.1 ENSMUSG00000106107 ENSMUST00000187850 Gm43190 sense_intronic Interval_131513 chr5 137657044 137657540 + 0 NA intron (ENSMUSG00000029722.15, intron 2 of 2) protein_coding-intron (ENSMUSG00000029722.15, intron 6 of 11) 7024 ENSMUSG00000029722.15 ENSMUSG00000029722 ENSMUST00000138604 Agfg2 protein_coding Interval_134699 chr6 30478415 30478626 + 0 NA TTS (ENSMUSG00000029782.20) protein_coding-TTS (ENSMUSG00000029782.20) 13659 ENSMUSG00000029782.20 ENSMUSG00000029782 ENSMUST00000148638 Tmem209 protein_coding Interval_11685 chr1 184665244 184665919 + 0 NA Intergenic Intergenic -29453 ENSMUSG00000103314.1 ENSMUSG00000103314 ENSMUST00000195144 Gm38358 processed_pseudogene Interval_121206 chr4 154041886 154042514 + 0 NA intron (ENSMUSG00000039492.7, intron 1 of 11) protein_coding-intron (ENSMUSG00000039492.7, intron 1 of 11) 477 ENSMUSG00000039492.7 ENSMUSG00000039492 ENSMUST00000047207 Ccdc27 protein_coding Interval_69186 chr16 91199521 91200462 + 0 NA Intergenic Intergenic 22935 ENSMUSG00000116882.1 ENSMUSG00000116882 ENSMUST00000231709 Gm49614 TEC Interval_88934 chr2 13168752 13169515 + 0 NA exon (ENSMUSG00000026727.10, exon 9 of 9) protein_coding-exon (ENSMUSG00000026727.10, exon 9 of 9) -5510 ENSMUSG00000102691.1 ENSMUSG00000102691 ENSMUST00000194117 Gm37780 TEC Interval_18203 chr10 83679255 83679921 + 0 NA Intergenic Intergenic 20317 ENSMUSG00000112072.1 ENSMUSG00000112072 ENSMUST00000218849 Gm47244 processed_pseudogene Interval_94566 chr2 92282702 92283116 + 0 NA intron (ENSMUSG00000058318.15, intron 6 of 6) protein_coding-intron (ENSMUSG00000058318.15, intron 4 of 15) -29245 ENSMUSG00000081730.1 ENSMUSG00000081730 ENSMUST00000119099 Gm13785 processed_pseudogene Interval_61064 chr15 79025564 79025976 + 0 NA promoter-TSS (ENSMUSG00000115867.1) lincRNA-promoter-TSS (ENSMUSG00000115867.1) -2241 ENSMUSG00000115867.1 ENSMUSG00000115867 ENSMUST00000231015 Gm17753 lincRNA Interval_138240 chr6 86541775 86542227 + 0 NA intron (ENSMUSG00000097048.7, intron 3 of 3) antisense-intron (ENSMUSG00000097048.7, intron 2 of 3) 14527 ENSMUSG00000097048.7 ENSMUSG00000097048 ENSMUST00000204663 1600020E01Rik antisense Interval_70514 chr17 11392248 11392621 + 0 NA intron (ENSMUSG00000023826.16, intron 3 of 10) protein_coding-intron (ENSMUSG00000023826.16, intron 4 of 6) -105669 ENSMUSG00000104527.1 ENSMUSG00000104527 ENSMUST00000195853 Gm37332 TEC Interval_87766 chr19 55729157 55730279 + 0 NA Intergenic Intergenic -12546 ENSMUSG00000024985.20 ENSMUSG00000024985 ENSMUST00000148666 Tcf7l2 protein_coding Interval_13623 chr10 20243187 20244244 + 0 NA intron (ENSMUSG00000019996.17, intron 3 of 3) protein_coding-intron (ENSMUSG00000019996.17, intron 3 of 17) 35225 ENSMUSG00000111356.1 ENSMUSG00000111356 ENSMUST00000216127 Rpl32l processed_pseudogene Interval_81523 chr18 61376487 61377372 + 0 NA intron (ENSMUSG00000033871.14, intron 1 of 11) protein_coding-intron (ENSMUSG00000033871.14, intron 2 of 12) -20884 ENSMUSG00000093026.1 ENSMUSG00000093026 ENSMUST00000175285 Gm25301 miRNA Interval_61464 chr15 81787032 81787792 + 0 NA intron (ENSMUSG00000022390.11, intron 17 of 22) protein_coding-intron (ENSMUSG00000022390.11, intron 17 of 22) 11633 ENSMUSG00000022390.11 ENSMUSG00000022390 ENSMUST00000230590 Zc3h7b protein_coding Interval_132800 chr5 147953119 147953780 + 0 NA intron (ENSMUSG00000085565.1, intron 3 of 3) lincRNA-intron (ENSMUSG00000085565.1, intron 3 of 3) 3717 ENSMUSG00000085565.1 ENSMUSG00000085565 ENSMUST00000138406 Gm15721 lincRNA Interval_155527 chr8 34117576 34118337 + 0 NA intron (ENSMUSG00000071113.4, intron 1 of 2) protein_coding-intron (ENSMUSG00000071113.4, intron 1 of 2) 2252 ENSMUSG00000109869.1 ENSMUSG00000109869 ENSMUST00000210178 Gm39158 antisense Interval_50415 chr14 12632797 12632998 + 0 NA intron (ENSMUSG00000054423.14, intron 3 of 28) protein_coding-intron (ENSMUSG00000054423.14, intron 3 of 28) 14229 ENSMUSG00000114453.1 ENSMUSG00000114453 ENSMUST00000225784 Gm17805 processed_pseudogene Interval_45008 chr13 51399860 51401353 + 0 NA intron (ENSMUSG00000112959.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000112959.1, intron 1 of 1) -8033 ENSMUSG00000067586.4 ENSMUSG00000067586 ENSMUST00000087978 S1pr3 protein_coding Interval_88429 chr2 5007624 5007944 + 0 NA intron (ENSMUSG00000026669.14, intron 2 of 4) protein_coding-intron (ENSMUSG00000026669.14, intron 3 of 19) -12946 ENSMUSG00000026669.14 ENSMUSG00000026669 ENSMUST00000125851 Mcm10 protein_coding Interval_86118 chr19 36860497 36860863 + 0 NA intron (ENSMUSG00000024811.11, intron 2 of 5) protein_coding-intron (ENSMUSG00000024811.11, intron 9 of 26) 11309 ENSMUSG00000024811.11 ENSMUSG00000024811 ENSMUST00000168654 Tnks2 protein_coding Interval_38373 chr12 77986690 77986899 + 0 NA Intergenic Intergenic 167212 ENSMUSG00000112551.1 ENSMUSG00000112551 ENSMUST00000218309 Gm8219 processed_pseudogene Interval_61321 chr15 80836471 80837058 + 0 NA intron (ENSMUSG00000047888.10, intron 1 of 17) protein_coding-intron (ENSMUSG00000047888.10, intron 4 of 24) -86300 ENSMUSG00000047888.10 ENSMUSG00000047888 ENSMUST00000228525 Tnrc6b protein_coding Interval_100446 chr2 169048953 169049620 + 0 NA Intergenic Intergenic -11834 ENSMUSG00000080415.1 ENSMUSG00000080415 ENSMUST00000116765 Gm26469 miRNA Interval_110800 chr4 8515986 8517462 + 0 NA Intergenic Intergenic -18920 ENSMUSG00000047187.9 ENSMUSG00000047187 ENSMUST00000060232 Rab2a protein_coding Interval_136097 chr6 50890641 50890929 + 0 NA Intergenic Intergenic -12708 ENSMUSG00000107993.3 ENSMUSG00000107993 ENSMUST00000161723 G930045G22Rik lincRNA Interval_39100 chr12 85041382 85041551 + 0 NA promoter-TSS (ENSMUSG00000021244.15) protein_coding-promoter-TSS (ENSMUSG00000021244.15) -761 ENSMUSG00000021244.15 ENSMUSG00000021244 ENSMUST00000166605 Ylpm1 protein_coding Interval_13415 chr10 18037620 18038200 + 0 NA Intergenic Intergenic -14820 ENSMUSG00000078453.3 ENSMUSG00000078453 ENSMUST00000220433 Abracl protein_coding Interval_93800 chr2 76989803 76990122 + 0 NA Intergenic Intergenic 32734 ENSMUSG00000044033.16 ENSMUSG00000044033 ENSMUST00000111833 Ccdc141 protein_coding Interval_57601 chr15 12718029 12719016 + 0 NA intron (ENSMUSG00000022197.16, intron 1 of 4) protein_coding-intron (ENSMUSG00000022197.16, intron 1 of 4) 23398 ENSMUSG00000095842.1 ENSMUSG00000095842 ENSMUST00000178350 Gm24302 miRNA Interval_25559 chr11 49763656 49765172 + 0 NA Intergenic Intergenic -7419 ENSMUSG00000092894.1 ENSMUSG00000092894 ENSMUST00000175153 Gm23813 miRNA Interval_128377 chr5 112959026 112959286 + 0 NA intron (ENSMUSG00000042249.11, intron 6 of 20) protein_coding-intron (ENSMUSG00000042249.11, intron 6 of 20) 56358 ENSMUSG00000042249.11 ENSMUSG00000042249 ENSMUST00000197776 Grk3 protein_coding Interval_62960 chr15 98214068 98214628 + 0 NA intron (ENSMUSG00000090129.10, intron 1 of 2) protein_coding-intron (ENSMUSG00000090129.10, intron 1 of 3) -5722 ENSMUSG00000090129.10 ENSMUSG00000090129 ENSMUST00000145768 Olfr287 protein_coding Interval_167864 chr9 73139973 73140211 + 0 NA Intergenic Intergenic 7403 ENSMUSG00000103556.1 ENSMUSG00000103556 ENSMUST00000192321 Gm38215 TEC Interval_65405 chr16 22177862 22178896 + 0 NA Intergenic Intergenic -45865 ENSMUSG00000064686.1 ENSMUSG00000064686 ENSMUST00000082752 Gm25810 snRNA Interval_119420 chr4 137556806 137557109 + 0 NA intron (ENSMUSG00000028763.18, intron 76 of 96) protein_coding-intron (ENSMUSG00000028763.18, intron 76 of 96) 18671 ENSMUSG00000099134.1 ENSMUSG00000099134 ENSMUST00000184284 Mir7018 miRNA Interval_82842 chr18 77396810 77398415 + 0 NA intron (ENSMUSG00000032818.16, intron 28 of 39) protein_coding-intron (ENSMUSG00000032818.16, intron 26 of 38) 69536 ENSMUSG00000025427.15 ENSMUSG00000025427 ENSMUST00000182146 Rnf165 protein_coding Interval_16570 chr10 64077074 64077287 + 0 NA exon (ENSMUSG00000060843.11, exon 3 of 3) protein_coding-exon (ENSMUSG00000060843.11, exon 3 of 3) 13067 ENSMUSG00000042846.8 ENSMUSG00000042846 ENSMUST00000133588 Lrrtm3 protein_coding Interval_41354 chr12 113024498 113025163 + 0 NA intron (ENSMUSG00000021143.10, intron 2 of 5) protein_coding-intron (ENSMUSG00000021143.10, intron 1 of 23) 10322 ENSMUSG00000021143.10 ENSMUSG00000021143 ENSMUST00000221382 Pacs2 protein_coding Interval_170291 chr9 106726625 106727285 + 0 NA intron (ENSMUSG00000040661.6, intron 2 of 21) protein_coding-intron (ENSMUSG00000040661.6, intron 2 of 21) -41653 ENSMUSG00000040813.16 ENSMUSG00000040813 ENSMUST00000185645 Tex264 protein_coding Interval_165464 chr9 48465457 48465946 + 0 NA Intergenic Intergenic 14889 ENSMUSG00000032026.7 ENSMUSG00000032026 ENSMUST00000214161 Rexo2 protein_coding Interval_18507 chr10 86803374 86804483 + 0 NA intron (ENSMUSG00000054027.8, intron 1 of 13) protein_coding-intron (ENSMUSG00000054027.8, intron 1 of 13) -21175 ENSMUSG00000054027.8 ENSMUSG00000054027 ENSMUST00000218792 Nt5dc3 protein_coding Interval_51141 chr14 24132253 24132578 + 0 NA intron (ENSMUSG00000118519.1, intron 3 of 3) antisense-intron (ENSMUSG00000118519.1, intron 3 of 3) 18131 ENSMUSG00000021782.14 ENSMUSG00000021782 ENSMUST00000169880 Dlg5 protein_coding Interval_133287 chr5 151189676 151190534 + 0 NA promoter-TSS (ENSMUSG00000016128.14) protein_coding-promoter-TSS (ENSMUSG00000016128.14) -62200 ENSMUSG00000107387.1 ENSMUSG00000107387 ENSMUST00000202597 5430435K18Rik lincRNA Interval_162709 chr9 7940594 7940897 + 0 NA intron (ENSMUSG00000053110.13, intron 5 of 8) protein_coding-intron (ENSMUSG00000053110.13, intron 6 of 8) -25093 ENSMUSG00000092185.1 ENSMUSG00000092185 ENSMUST00000174760 Gm20416 processed_transcript Interval_46522 chr13 66807036 66808643 + 0 NA Intergenic Intergenic -5279 ENSMUSG00000114353.1 ENSMUSG00000114353 ENSMUST00000224917 Gm7896 transcribed_processed_pseudogene Interval_26566 chr11 58943427 58944105 + 0 NA Intergenic Intergenic -4850 ENSMUSG00000020496.10 ENSMUSG00000020496 ENSMUST00000094151 Rnf187 protein_coding Interval_141146 chr6 125249739 125250690 + 0 NA Intergenic Intergenic 7794 ENSMUSG00000107965.1 ENSMUSG00000107965 ENSMUST00000204996 Gm44259 processed_pseudogene Interval_55256 chr14 79700993 79701292 + 0 NA intron (ENSMUSG00000115740.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000115740.1, intron 1 of 1) 1268 ENSMUSG00000115740.1 ENSMUSG00000115740 ENSMUST00000226962 Gm49042 lincRNA Interval_37874 chr12 72733058 72734870 + 0 NA Intergenic Intergenic 7618 ENSMUSG00000112989.1 ENSMUSG00000112989 ENSMUST00000221318 Gm48143 processed_pseudogene Interval_65872 chr16 29958045 29958236 + 0 NA TTS (ENSMUSG00000075286.4) lincRNA-TTS (ENSMUSG00000075286.4) -11386 ENSMUSG00000097313.2 ENSMUSG00000097313 ENSMUST00000232356 Gm26569 processed_transcript Interval_105469 chr3 86840976 86843136 + 0 NA intron (ENSMUSG00000028078.14, intron 2 of 15) protein_coding-intron (ENSMUSG00000028078.14, intron 2 of 15) -22436 ENSMUSG00000104074.1 ENSMUSG00000104074 ENSMUST00000195159 Gm37025 processed_pseudogene Interval_160292 chr8 107784690 107784973 + 0 NA Intergenic Intergenic -56126 ENSMUSG00000095727.1 ENSMUSG00000095727 ENSMUST00000178119 Gm23646 miRNA Interval_125573 chr5 72086569 72086887 + 0 NA intron (ENSMUSG00000029212.11, intron 6 of 7) protein_coding-intron (ENSMUSG00000029212.11, intron 5 of 8) 39523 ENSMUSG00000082705.1 ENSMUSG00000082705 ENSMUST00000118662 Gm15616 processed_pseudogene Interval_131026 chr5 134638704 134640001 + 0 NA promoter-TSS (ENSMUSG00000040731.13) protein_coding-promoter-TSS (ENSMUSG00000040731.13) 138 ENSMUSG00000040731.13 ENSMUSG00000040731 ENSMUST00000201263 Eif4h protein_coding Interval_72358 chr17 29398077 29399929 + 0 NA Intergenic Intergenic 25652 ENSMUSG00000024013.15 ENSMUSG00000024013 ENSMUST00000144616 Fgd2 protein_coding Interval_128728 chr5 114950542 114951831 + 0 NA intron (ENSMUSG00000029556.12, intron 6 of 8) protein_coding-intron (ENSMUSG00000029556.12, intron 7 of 9) 8982 ENSMUSG00000029559.15 ENSMUSG00000029559 ENSMUST00000131771 2210016L21Rik protein_coding Interval_141647 chr6 131844848 131845183 + 0 NA Intergenic Intergenic -35653 ENSMUSG00000107983.1 ENSMUSG00000107983 ENSMUST00000203562 Gm43973 processed_pseudogene Interval_79509 chr18 32523604 32524263 + 0 NA Intergenic Intergenic -23501 ENSMUSG00000108896.1 ENSMUSG00000108896 ENSMUST00000207501 Gm20136 processed_pseudogene Interval_61773 chr15 84024930 84026251 + 0 NA intron (ENSMUSG00000022441.17, intron 4 of 31) protein_coding-intron (ENSMUSG00000022441.17, intron 2 of 2) -4749 ENSMUSG00000081925.1 ENSMUSG00000081925 ENSMUST00000117961 Rpl31-ps22 processed_pseudogene Interval_23576 chr11 23497342 23498660 + 0 NA promoter-TSS (ENSMUSG00000020288.13) protein_coding-promoter-TSS (ENSMUSG00000020288.13) -162 ENSMUSG00000106362.1 ENSMUSG00000106362 ENSMUST00000197943 Gm47279 miRNA Interval_42211 chr13 9978637 9978859 + 0 NA intron (ENSMUSG00000046159.16, intron 4 of 4) protein_coding-intron (ENSMUSG00000046159.16, intron 4 of 4) 73100 ENSMUSG00000113502.1 ENSMUSG00000113502 ENSMUST00000222830 Gm47411 TEC Interval_69097 chr16 90634912 90635650 + 0 NA Intergenic Intergenic 32785 ENSMUSG00000064471.1 ENSMUSG00000064471 ENSMUST00000082537 Gm23406 snoRNA Interval_2327 chr1 38090028 38090328 + 0 NA intron (ENSMUSG00000026082.11, intron 5 of 22) protein_coding-intron (ENSMUSG00000026082.11, intron 5 of 22) -12873 ENSMUSG00000103804.1 ENSMUSG00000103804 ENSMUST00000195028 Gm37062 sense_intronic Interval_92996 chr2 69381711 69382119 + 0 NA intron (ENSMUSG00000027068.6, intron 1 of 4) protein_coding-intron (ENSMUSG00000027068.6, intron 1 of 4) 1470 ENSMUSG00000027068.6 ENSMUSG00000027068 ENSMUST00000063690 Dhrs9 protein_coding Interval_61554 chr15 82298711 82299484 + 0 NA intron (ENSMUSG00000022455.4, intron 1 of 5) protein_coding-intron (ENSMUSG00000022455.4, intron 1 of 5) 143 ENSMUSG00000022455.4 ENSMUSG00000022455 ENSMUST00000023089 Wbp2nl protein_coding Interval_65071 chr16 18849589 18850419 + 0 NA intron (ENSMUSG00000099908.1, intron 2 of 23) protein_coding-intron (ENSMUSG00000099908.1, intron 2 of 23) 13420 ENSMUSG00000099908.1 ENSMUSG00000099908 ENSMUST00000190050 Gm28539 protein_coding Interval_23221 chr11 20639905 20641455 + 0 NA intron (ENSMUSG00000049800.13, intron 1 of 1) protein_coding-intron (ENSMUSG00000049800.13, intron 1 of 1) -65491 ENSMUSG00000083555.1 ENSMUSG00000083555 ENSMUST00000121890 Gm12035 processed_pseudogene Interval_106791 chr3 100861870 100862340 + 0 NA intron (ENSMUSG00000051076.8, intron 1 of 5) protein_coding-intron (ENSMUSG00000051076.8, intron 1 of 5) 36646 ENSMUSG00000051076.8 ENSMUSG00000051076 ENSMUST00000054791 Vtcn1 protein_coding Interval_109157 chr3 137050279 137050539 + 0 NA Intergenic Intergenic -17483 ENSMUSG00000065906.1 ENSMUSG00000065906 ENSMUST00000083972 Gm26107 snRNA Interval_103822 chr3 53416006 53416592 + 0 NA Intergenic Intergenic -14102 ENSMUSG00000105397.1 ENSMUSG00000105397 ENSMUST00000197550 Gm43471 processed_pseudogene Interval_84145 chr19 7517673 7517905 + 0 NA intron (ENSMUSG00000024759.14, intron 4 of 12) protein_coding-intron (ENSMUSG00000024759.14, intron 4 of 12) 23594 ENSMUSG00000024759.14 ENSMUSG00000024759 ENSMUST00000236382 Atl3 protein_coding Interval_45122 chr13 52518538 52518772 + 0 NA intron (ENSMUSG00000047842.7, intron 1 of 1) protein_coding-intron (ENSMUSG00000047842.7, intron 1 of 1) 12624 ENSMUSG00000047842.7 ENSMUSG00000047842 ENSMUST00000057442 Diras2 protein_coding Interval_115613 chr4 101392221 101392429 + 0 NA intron (ENSMUSG00000087361.7, intron 3 of 3) lincRNA-intron (ENSMUSG00000087361.7, intron 3 of 3) -10756 ENSMUSG00000084758.1 ENSMUSG00000084758 ENSMUST00000124786 Gm12798 lincRNA Interval_29629 chr11 85604678 85605349 + 0 NA intron (ENSMUSG00000059439.15, intron 13 of 14) protein_coding-intron (ENSMUSG00000059439.15, intron 23 of 24) 111254 ENSMUSG00000087779.1 ENSMUSG00000087779 ENSMUST00000157154 Gm23765 snRNA Interval_1062 chr1 14705373 14706721 + 0 NA Intergenic Intergenic -46890 ENSMUSG00000054493.2 ENSMUSG00000054493 ENSMUST00000067599 Gm9947 antisense Interval_158517 chr8 84197226 84198818 + 0 NA promoter-TSS (ENSMUSG00000097120.1) lincRNA-promoter-TSS (ENSMUSG00000097120.1) -355 ENSMUSG00000097120.1 ENSMUSG00000097120 ENSMUST00000181282 Gm26887 lincRNA Interval_66598 chr16 35527587 35528036 + 0 NA Intergenic Intergenic -18392 ENSMUSG00000099429.1 ENSMUSG00000099429 ENSMUST00000187829 1600019K03Rik lincRNA Interval_30428 chr11 94303156 94303459 + 0 NA intron (ENSMUSG00000020863.15, intron 4 of 11) protein_coding-intron (ENSMUSG00000020863.15, intron 4 of 10) -5089 ENSMUSG00000020863.15 ENSMUSG00000020863 ENSMUST00000165620 Luc7l3 protein_coding Interval_76785 chr17 84039352 84040059 + 0 NA Intergenic Intergenic 2815 ENSMUSG00000117432.1 ENSMUSG00000117432 ENSMUST00000234723 Gm49967 lincRNA Interval_106984 chr3 102498913 102499211 + 0 NA intron (ENSMUSG00000027859.10, intron 1 of 2) protein_coding-intron (ENSMUSG00000027859.10, intron 1 of 2) 7720 ENSMUSG00000106121.1 ENSMUSG00000106121 ENSMUST00000197086 Gm42679 sense_intronic Interval_88699 chr2 9860599 9861952 + 0 NA intron (ENSMUSG00000015619.10, intron 5 of 5) protein_coding-intron (ENSMUSG00000015619.10, intron 5 of 5) 14124 ENSMUSG00000015619.10 ENSMUSG00000015619 ENSMUST00000142305 Gata3 protein_coding Interval_155700 chr8 36238299 36239069 + 0 NA intron (ENSMUSG00000039633.7, intron 1 of 11) protein_coding-intron (ENSMUSG00000039633.7, intron 1 of 11) 10832 ENSMUSG00000039633.7 ENSMUSG00000039633 ENSMUST00000065297 Lonrf1 protein_coding Interval_118239 chr4 129735002 129736163 + 0 NA intron (ENSMUSG00000028790.13, intron 1 of 1) protein_coding-intron (ENSMUSG00000028790.13, intron 1 of 8) -21762 ENSMUSG00000028790.13 ENSMUSG00000028790 ENSMUST00000139281 Khdrbs1 protein_coding Interval_149485 chr7 99037058 99039263 + 0 NA intron (ENSMUSG00000035354.9, intron 7 of 11) protein_coding-intron (ENSMUSG00000035354.9, intron 6 of 14) -21516 ENSMUSG00000035354.9 ENSMUSG00000035354 ENSMUST00000208502 Uvrag protein_coding Interval_72829 chr17 32431942 32432364 + 0 NA Intergenic Intergenic -11178 ENSMUSG00000079563.10 ENSMUSG00000079563 ENSMUST00000236703 Pglyrp2 protein_coding Interval_76860 chr17 84573437 84575278 + 0 NA intron (ENSMUSG00000040852.6, intron 11 of 29) protein_coding-intron (ENSMUSG00000040852.6, intron 11 of 29) -1193 ENSMUSG00000040852.6 ENSMUSG00000040852 ENSMUST00000235090 Plekhh2 protein_coding Interval_108614 chr3 129581598 129581835 + 0 NA intron (ENSMUSG00000041220.10, intron 1 of 2) protein_coding-intron (ENSMUSG00000041220.10, intron 2 of 4) 43575 ENSMUSG00000106092.1 ENSMUSG00000106092 ENSMUST00000200283 Gm43072 TEC Interval_104252 chr3 62087202 62087389 + 0 NA Intergenic Intergenic -17501 ENSMUSG00000104489.1 ENSMUSG00000104489 ENSMUST00000193786 Gm9700 processed_pseudogene Interval_52702 chr14 48729847 48730469 + 0 NA intron (ENSMUSG00000115579.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000098682.8, intron 4 of 4) 10651 ENSMUSG00000115579.1 ENSMUSG00000115579 ENSMUST00000227438 Gm49156 lincRNA Interval_100006 chr2 166426755 166427252 + 0 NA Intergenic Intergenic -20448 ENSMUSG00000085129.1 ENSMUSG00000085129 ENSMUST00000127920 5031425F14Rik lincRNA Interval_92897 chr2 68291679 68293242 + 0 NA intron (ENSMUSG00000027030.15, intron 7 of 10) protein_coding-intron (ENSMUSG00000027030.15, intron 14 of 17) 94221 ENSMUSG00000027030.15 ENSMUSG00000027030 ENSMUST00000149581 Stk39 protein_coding Interval_129079 chr5 117291511 117294192 + 0 NA Intergenic Intergenic 1555 ENSMUSG00000106829.1 ENSMUSG00000106829 ENSMUST00000202659 Gm3786 processed_pseudogene Interval_139645 chr6 105200326 105201613 + 0 NA Intergenic Intergenic -31636 ENSMUSG00000089587.1 ENSMUSG00000089587 ENSMUST00000158962 Gm23339 snoRNA Interval_32170 chr11 105911359 105912210 + 0 NA intron (ENSMUSG00000053580.16, intron 3 of 4) protein_coding-intron (ENSMUSG00000053580.16, intron 4 of 8) -31920 ENSMUSG00000103469.1 ENSMUSG00000103469 ENSMUST00000195385 Gm9910 TEC Interval_100836 chr2 172809310 172810003 + 0 NA Intergenic Intergenic 54685 ENSMUSG00000093160.1 ENSMUSG00000093160 ENSMUST00000175419 Gm22773 miRNA Interval_159911 chr8 105138018 105139025 + 0 NA intron (ENSMUSG00000060560.8, intron 2 of 13) protein_coding-intron (ENSMUSG00000060560.8, intron 2 of 13) 6721 ENSMUSG00000060560.8 ENSMUSG00000060560 ENSMUST00000161289 Ces4a protein_coding Interval_93734 chr2 76321800 76322133 + 0 NA intron (ENSMUSG00000075270.11, intron 1 of 19) protein_coding-intron (ENSMUSG00000075270.11, intron 1 of 19) 3484 ENSMUSG00000105164.1 ENSMUSG00000105164 ENSMUST00000196553 Gm44337 miRNA Interval_148853 chr7 89316030 89318089 + 0 NA intron (ENSMUSG00000039428.11, intron 1 of 8) protein_coding-intron (ENSMUSG00000039428.11, intron 1 of 14) -21195 ENSMUSG00000096631.1 ENSMUSG00000096631 ENSMUST00000179283 Gm22171 miRNA Interval_40938 chr12 110031479 110031756 + 0 NA Intergenic Intergenic -7744 ENSMUSG00000113063.1 ENSMUSG00000113063 ENSMUST00000222974 Gm34667 lincRNA Interval_80414 chr18 41991737 41992050 + 0 NA exon (ENSMUSG00000073574.4, exon 2 of 3) protein_coding-exon (ENSMUSG00000073574.4, exon 2 of 3) 7156 ENSMUSG00000073574.4 ENSMUSG00000073574 ENSMUST00000097591 Grxcr2 protein_coding Interval_79056 chr18 24195810 24196084 + 0 NA Intergenic Intergenic -36650 ENSMUSG00000000420.15 ENSMUSG00000000420 ENSMUST00000170191 Galnt1 protein_coding Interval_137753 chr6 82091320 82093838 + 0 NA TTS (ENSMUSG00000035104.14) protein_coding-TTS (ENSMUSG00000035104.14) -39998 ENSMUSG00000087136.1 ENSMUSG00000087136 ENSMUST00000145950 Gm15864 antisense Interval_88766 chr2 10405683 10405915 + 0 NA intron (ENSMUSG00000061186.15, intron 6 of 22) protein_coding-intron (ENSMUSG00000061186.15, intron 5 of 22) -31758 ENSMUSG00000086748.1 ENSMUSG00000086748 ENSMUST00000137351 Gm13261 processed_transcript Interval_93127 chr2 70456105 70457325 + 0 NA Intergenic Intergenic -2267 ENSMUSG00000047965.9 ENSMUSG00000047965 ENSMUST00000140507 Rpl9-ps7 processed_pseudogene Interval_117001 chr4 118900531 118900706 + 0 NA Intergenic Intergenic 12021 ENSMUSG00000073768.3 ENSMUSG00000073768 ENSMUST00000094830 Olfr1330 protein_coding Interval_39661 chr12 91848632 91849635 + 0 NA promoter-TSS (ENSMUSG00000020964.14) protein_coding-promoter-TSS (ENSMUSG00000020964.14) 24 ENSMUSG00000020964.14 ENSMUSG00000020964 ENSMUST00000169843 Sel1l protein_coding Interval_11038 chr1 178645008 178645213 + 0 NA intron (ENSMUSG00000026494.12, intron 2 of 3) protein_coding-intron (ENSMUSG00000026494.12, intron 2 of 14) 8205 ENSMUSG00000064967.1 ENSMUSG00000064967 ENSMUST00000083033 Gm24405 snRNA Interval_104332 chr3 63551344 63551833 + 0 NA Intergenic Intergenic 62595 ENSMUSG00000088957.1 ENSMUSG00000088957 ENSMUST00000158332 Gm24946 snRNA Interval_148691 chr7 84174448 84175327 + 0 NA intron (ENSMUSG00000097016.2, intron 2 of 4) bidirectional_promoter_lncRNA-intron (ENSMUSG00000097016.2, intron 2 of 3) 4322 ENSMUSG00000092743.1 ENSMUSG00000092743 ENSMUST00000175002 Gm22177 snRNA Interval_58156 chr15 29930081 29930321 + 0 NA Intergenic Intergenic 18169 ENSMUSG00000115544.1 ENSMUSG00000115544 ENSMUST00000226477 Gm49281 processed_pseudogene Interval_89502 chr2 21205063 21206215 + 0 NA promoter-TSS (ENSMUSG00000026679.3) protein_coding-promoter-TSS (ENSMUSG00000026679.3) -120 ENSMUSG00000048550.17 ENSMUSG00000048550 ENSMUST00000102951 Thnsl1 protein_coding Interval_102606 chr3 28262368 28264487 + 0 NA promoter-TSS (ENSMUSG00000027692.16) protein_coding-promoter-TSS (ENSMUSG00000027692.16) -155 ENSMUSG00000027692.16 ENSMUSG00000027692 ENSMUST00000192205 Tnik protein_coding Interval_18243 chr10 84221608 84222599 + 0 NA promoter-TSS (ENSMUSG00000111062.1) lincRNA-promoter-TSS (ENSMUSG00000111062.1) -46 ENSMUSG00000111062.1 ENSMUSG00000111062 ENSMUST00000216890 Gm47253 lincRNA Interval_162305 chr8 126935805 126936378 + 0 NA intron (ENSMUSG00000093904.2, intron 2 of 2) protein_coding-intron (ENSMUSG00000093904.2, intron 4 of 4) 8889 ENSMUSG00000065637.1 ENSMUSG00000065637 ENSMUST00000083703 Gm26397 snoRNA Interval_132798 chr5 147950075 147950614 + 0 NA exon (ENSMUSG00000085565.1, exon 4 of 4) lincRNA-exon (ENSMUSG00000085565.1, exon 4 of 4) 6822 ENSMUSG00000085565.1 ENSMUSG00000085565 ENSMUST00000138406 Gm15721 lincRNA Interval_160006 chr8 105707679 105708516 + 0 NA promoter-TSS (ENSMUSG00000013155.10) protein_coding-promoter-TSS (ENSMUSG00000013155.10) 48 ENSMUSG00000013155.10 ENSMUSG00000013155 ENSMUST00000013299 Enkd1 protein_coding Interval_148008 chr7 77811321 77813153 + 0 NA Intergenic Intergenic 98083 ENSMUSG00000064940.1 ENSMUSG00000064940 ENSMUST00000083006 Gm23239 snRNA Interval_136333 chr6 53196117 53197030 + 0 NA Intergenic Intergenic -24591 ENSMUSG00000107935.1 ENSMUSG00000107935 ENSMUST00000205210 Gm4872 lincRNA Interval_113025 chr4 47020389 47021188 + 0 NA intron (ENSMUSG00000066191.12, intron 14 of 15) protein_coding-intron (ENSMUSG00000066191.12, intron 13 of 14) -10007 ENSMUSG00000048824.7 ENSMUSG00000048824 ENSMUST00000135777 Gm568 lincRNA Interval_104041 chr3 57625398 57626072 + 0 NA promoter-TSS (ENSMUSG00000097339.5) lincRNA-promoter-TSS (ENSMUSG00000097339.5) 22 ENSMUSG00000097339.5 ENSMUSG00000097339 ENSMUST00000199419 Gm26671 lincRNA Interval_174507 chrX 153835921 153836762 + 0 NA Intergenic Intergenic 4116 ENSMUSG00000046550.8 ENSMUSG00000046550 ENSMUST00000049999 Spin2c protein_coding Interval_21526 chr10 129228332 129228858 + 0 NA Intergenic Intergenic -7609 ENSMUSG00000096229.3 ENSMUSG00000096229 ENSMUST00000097164 Olfr774 protein_coding Interval_163285 chr9 20580909 20582854 + 0 NA exon (ENSMUSG00000058192.16, exon 1 of 1) protein_coding-exon (ENSMUSG00000058192.16, exon 1 of 1) 349 ENSMUSG00000058192.16 ENSMUSG00000058192 ENSMUST00000060063 Zfp846 protein_coding Interval_110015 chr3 152474555 152475190 + 0 NA intron (ENSMUSG00000039058.11, intron 5 of 6) protein_coding-intron (ENSMUSG00000039058.11, intron 12 of 13) 51880 ENSMUSG00000039058.11 ENSMUSG00000039058 ENSMUST00000198552 Ak5 protein_coding Interval_69384 chr16 92615323 92615679 + 0 NA intron (ENSMUSG00000097139.3, intron 4 of 4) protein_coding-intron (ENSMUSG00000022952.17, intron 6 of 7) 2687 ENSMUSG00000097139.3 ENSMUSG00000097139 ENSMUST00000180989 Gm26626 antisense Interval_93353 chr2 72252549 72253027 + 0 NA intron (ENSMUSG00000049044.16, intron 2 of 2) protein_coding-intron (ENSMUSG00000049044.16, intron 26 of 27) -3813 ENSMUSG00000086231.1 ENSMUSG00000086231 ENSMUST00000132792 Rapgef4os3 antisense Interval_152980 chr7 140230413 140231696 + 0 NA TTS (ENSMUSG00000025461.11) protein_coding-TTS (ENSMUSG00000025461.11) 12787 ENSMUSG00000025461.11 ENSMUSG00000025461 ENSMUST00000209840 Cd163l1 protein_coding Interval_160368 chr8 108771444 108771820 + 0 NA intron (ENSMUSG00000038872.10, intron 1 of 9) protein_coding-intron (ENSMUSG00000038872.10, intron 1 of 9) 34039 ENSMUSG00000104292.1 ENSMUSG00000104292 ENSMUST00000191614 Gm38042 TEC Interval_17265 chr10 75436610 75437388 + 0 NA intron (ENSMUSG00000033427.14, intron 8 of 9) protein_coding-intron (ENSMUSG00000033427.14, intron 8 of 9) -5621 ENSMUSG00000084622.1 ENSMUSG00000084622 ENSMUST00000122673 Gm25545 misc_RNA Interval_27059 chr11 62613462 62614453 + 0 NA intron (ENSMUSG00000046417.14, intron 2 of 3) protein_coding-intron (ENSMUSG00000046417.14, intron 2 of 3) 8191 ENSMUSG00000085762.1 ENSMUSG00000085762 ENSMUST00000123423 Lrrc75aos2 antisense Interval_99111 chr2 157278561 157279764 + 0 NA promoter-TSS (ENSMUSG00000027642.15) protein_coding-promoter-TSS (ENSMUSG00000027642.15) 387 ENSMUSG00000074627.11 ENSMUSG00000074627 ENSMUST00000150035 Mroh8 protein_coding Interval_155377 chr8 32951726 32952012 + 0 NA Intergenic Intergenic -9387 ENSMUSG00000079070.10 ENSMUSG00000079070 ENSMUST00000180220 Gm3985 lincRNA Interval_76327 chr17 79081315 79082915 + 0 NA TTS (ENSMUSG00000024084.8) protein_coding-TTS (ENSMUSG00000024084.8) 21629 ENSMUSG00000117054.1 ENSMUSG00000117054 ENSMUST00000232888 Gm49869 processed_pseudogene Interval_48094 chr13 95968014 95968534 + 0 NA intron (ENSMUSG00000051111.16, intron 5 of 5) protein_coding-intron (ENSMUSG00000051111.16, intron 12 of 12) 21952 ENSMUSG00000051111.16 ENSMUSG00000051111 ENSMUST00000220740 Sv2c protein_coding Interval_157018 chr8 64502743 64503557 + 0 NA Intergenic Intergenic 11291 ENSMUSG00000076042.1 ENSMUSG00000076042 ENSMUST00000102088 Mir710 miRNA Interval_36542 chr12 49124306 49124644 + 0 NA Intergenic Intergenic -15781 ENSMUSG00000098099.1 ENSMUSG00000098099 ENSMUST00000182862 Gm7456 processed_pseudogene Interval_999 chr1 13773249 13773504 + 0 NA TTS (ENSMUSG00000077368.1) snoRNA-TTS (ENSMUSG00000077368.1) 1088 ENSMUSG00000077368.1 ENSMUSG00000077368 ENSMUST00000104180 Gm26273 snoRNA Interval_148250 chr7 80090197 80091384 + 0 NA promoter-TSS (ENSMUSG00000108655.1) antisense-promoter-TSS (ENSMUSG00000108655.1) -359 ENSMUSG00000108655.1 ENSMUSG00000108655 ENSMUST00000206423 Gm44949 antisense Interval_33565 chr11 117238098 117238667 + 0 NA intron (ENSMUSG00000059248.13, intron 1 of 10) protein_coding-intron (ENSMUSG00000059248.13, intron 2 of 11) 25055 ENSMUSG00000086050.1 ENSMUSG00000086050 ENSMUST00000123882 Gm16045 antisense Interval_31318 chr11 99662943 99663620 + 0 NA promoter-TSS (ENSMUSG00000082020.1) unprocessed_pseudogene-promoter-TSS (ENSMUSG00000082020.1) -179 ENSMUSG00000082020.1 ENSMUSG00000082020 ENSMUST00000119334 Gm14182 unprocessed_pseudogene Interval_51889 chr14 33367291 33367646 + 0 NA intron (ENSMUSG00000063506.14, intron 7 of 7) protein_coding-intron (ENSMUSG00000063506.14, intron 5 of 5) 2675 ENSMUSG00000087639.1 ENSMUSG00000087639 ENSMUST00000137359 Gm15512 antisense Interval_120736 chr4 150341542 150342342 + 0 NA intron (ENSMUSG00000039852.17, intron 1 of 22) protein_coding-intron (ENSMUSG00000039852.17, intron 1 of 22) 20749 ENSMUSG00000089292.1 ENSMUSG00000089292 ENSMUST00000158667 Gm23209 snRNA Interval_70951 chr17 16702299 16702566 + 0 NA Intergenic Intergenic -24021 ENSMUSG00000116944.1 ENSMUSG00000116944 ENSMUST00000231367 Gm7477 processed_pseudogene Interval_54695 chr14 73402258 73402828 + 0 NA Intergenic Intergenic -33419 ENSMUSG00000022108.8 ENSMUSG00000022108 ENSMUST00000228637 Itm2b protein_coding Interval_160794 chr8 112375905 112376286 + 0 NA Intergenic Intergenic -139129 ENSMUSG00000110435.1 ENSMUSG00000110435 ENSMUST00000212314 Gm3635 processed_pseudogene Interval_173712 chrX 102310731 102312484 + 0 NA intron (ENSMUSG00000067567.12, intron 9 of 10) protein_coding-intron (ENSMUSG00000067567.12, intron 9 of 10) -56082 ENSMUSG00000093428.1 ENSMUSG00000093428 ENSMUST00000176507 Gm26318 miRNA Interval_141121 chr6 125110890 125111388 + 0 NA intron (ENSMUSG00000063870.12, intron 22 of 38) protein_coding-intron (ENSMUSG00000063870.12, intron 22 of 38) -10585 ENSMUSG00000088208.1 ENSMUSG00000088208 ENSMUST00000157583 Gm23751 scaRNA Interval_58065 chr15 27581476 27583320 + 0 NA intron (ENSMUSG00000022265.7, intron 1 of 4) protein_coding-intron (ENSMUSG00000022265.7, intron 8 of 11) 10904 ENSMUSG00000098416.1 ENSMUSG00000098416 ENSMUST00000184426 Mir7117 miRNA Interval_159728 chr8 99543808 99545280 + 0 NA intron (ENSMUSG00000052479.5, intron 1 of 4) lincRNA-intron (ENSMUSG00000052479.5, intron 1 of 4) -37774 ENSMUSG00000090116.1 ENSMUSG00000090116 ENSMUST00000161597 Gm15680 sense_overlapping Interval_136190 chr6 51923303 51923622 + 0 NA intron (ENSMUSG00000059182.7, intron 4 of 12) protein_coding-intron (ENSMUSG00000059182.7, intron 4 of 12) -51533 ENSMUSG00000059182.7 ENSMUSG00000059182 ENSMUST00000203313 Skap2 protein_coding Interval_70672 chr17 12946395 12946586 + 0 NA intron (ENSMUSG00000023832.14, intron 5 of 7) protein_coding-intron (ENSMUSG00000023832.14, intron 6 of 8) 14230 ENSMUSG00000023832.14 ENSMUSG00000023832 ENSMUST00000159358 Acat2 protein_coding Interval_73594 chr17 40899644 40900215 + 0 NA Intergenic Intergenic 14421 ENSMUSG00000091043.2 ENSMUSG00000091043 ENSMUST00000166343 Glyatl3 protein_coding Interval_124045 chr5 37806835 37808015 + 0 NA exon (ENSMUSG00000107131.1, exon 1 of 2) lincRNA-exon (ENSMUSG00000107131.1, exon 1 of 2) 119 ENSMUSG00000107131.1 ENSMUSG00000107131 ENSMUST00000201761 Gm43763 lincRNA Interval_117054 chr4 119249282 119249582 + 0 NA TTS (ENSMUSG00000028641.16) protein_coding-TTS (ENSMUSG00000028641.16) -6077 ENSMUSG00000066058.11 ENSMUSG00000066058 ENSMUST00000094823 Cldn19 protein_coding Interval_99613 chr2 163592339 163593333 + 0 NA Intergenic Intergenic -9478 ENSMUSG00000017679.16 ENSMUSG00000017679 ENSMUST00000132904 Ttpal protein_coding Interval_51964 chr14 34309886 34311880 + 0 NA promoter-TSS (ENSMUSG00000041471.9) protein_coding-promoter-TSS (ENSMUSG00000041471.9) -498 ENSMUSG00000041471.9 ENSMUSG00000041471 ENSMUST00000228132 Shld2 protein_coding Interval_46245 chr13 62923432 62924851 + 0 NA Intergenic Intergenic 25301 ENSMUSG00000113057.1 ENSMUSG00000113057 ENSMUST00000221723 Gm48812 lincRNA Interval_135285 chr6 38057478 38057797 + 0 NA intron (ENSMUSG00000038600.12, intron 17 of 21) protein_coding-intron (ENSMUSG00000038600.12, intron 16 of 20) 25735 ENSMUSG00000038600.12 ENSMUSG00000038600 ENSMUST00000130816 Atp6v0a4 protein_coding Interval_26044 chr11 53735512 53736041 + 0 NA Intergenic Intergenic 2197 ENSMUSG00000083986.1 ENSMUSG00000083986 ENSMUST00000119924 Gm12213 processed_pseudogene Interval_104761 chr3 71239830 71241125 + 0 NA Intergenic Intergenic 161070 ENSMUSG00000102666.1 ENSMUSG00000102666 ENSMUST00000193033 Gm8599 processed_pseudogene Interval_171382 chr9 117192768 117193415 + 0 NA intron (ENSMUSG00000039607.17, intron 1 of 13) protein_coding-intron (ENSMUSG00000039607.17, intron 1 of 12) -59445 ENSMUSG00000079669.2 ENSMUSG00000079669 ENSMUST00000172075 Gm17396 processed_transcript Interval_151569 chr7 123918070 123918471 + 0 NA Intergenic Intergenic 23939 ENSMUSG00000084484.1 ENSMUSG00000084484 ENSMUST00000122535 Gm23788 snRNA Interval_118671 chr4 133115868 133116811 + 0 NA Intergenic Intergenic -14201 ENSMUSG00000028868.13 ENSMUSG00000028868 ENSMUST00000136637 Wasf2 protein_coding Interval_103125 chr3 35725253 35725669 + 0 NA Intergenic Intergenic -9912 ENSMUSG00000064834.1 ENSMUSG00000064834 ENSMUST00000082900 Gm25696 snRNA Interval_151236 chr7 119964124 119965715 + 0 NA intron (ENSMUSG00000052273.4, intron 49 of 60) protein_coding-intron (ENSMUSG00000052273.4, intron 49 of 60) -4902 ENSMUSG00000088172.1 ENSMUSG00000088172 ENSMUST00000157547 Gm25217 snRNA Interval_7828 chr1 133961600 133962129 + 0 NA promoter-TSS (ENSMUSG00000100987.1) lincRNA-promoter-TSS (ENSMUSG00000100987.1) -298 ENSMUSG00000100987.1 ENSMUSG00000100987 ENSMUST00000188504 Gm1627 lincRNA Interval_146861 chr7 53757331 53758123 + 0 NA Intergenic Intergenic 134162 ENSMUSG00000099176.1 ENSMUSG00000099176 ENSMUST00000184140 Mir6238 miRNA Interval_48263 chr13 97505102 97506296 + 0 NA Intergenic Intergenic -5505 ENSMUSG00000114926.1 ENSMUSG00000114926 ENSMUST00000225874 Gm2379 lincRNA Interval_31166 chr11 98586546 98586908 + 0 NA intron (ENSMUSG00000038150.7, intron 1 of 3) protein_coding-intron (ENSMUSG00000038150.7, intron 1 of 3) 641 ENSMUSG00000038150.7 ENSMUSG00000038150 ENSMUST00000052919 Ormdl3 protein_coding Interval_149180 chr7 96015355 96015731 + 0 NA Intergenic Intergenic -102157 ENSMUSG00000108628.1 ENSMUSG00000108628 ENSMUST00000205327 Gm5037 processed_pseudogene Interval_6462 chr1 110429240 110429791 + 0 NA Intergenic Intergenic -18235 ENSMUSG00000100290.1 ENSMUSG00000100290 ENSMUST00000187425 Gm18552 processed_pseudogene Interval_73447 chr17 37326591 37326892 + 0 NA Intergenic Intergenic -9687 ENSMUSG00000091531.2 ENSMUSG00000091531 ENSMUST00000169373 Olfr102 protein_coding Interval_127465 chr5 104119303 104119860 + 0 NA exon (ENSMUSG00000097877.2, exon 4 of 4) antisense-exon (ENSMUSG00000097877.2, exon 4 of 4) -6142 ENSMUSG00000029309.7 ENSMUSG00000029309 ENSMUST00000199947 Sparcl1 protein_coding Interval_55579 chr14 93296985 93297383 + 0 NA intron (ENSMUSG00000055421.8, intron 3 of 3) protein_coding-intron (ENSMUSG00000055421.8, intron 3 of 3) -13953 ENSMUSG00000115447.1 ENSMUSG00000115447 ENSMUST00000228387 Gm48964 TEC Interval_35357 chr12 21024456 21024727 + 0 NA intron (ENSMUSG00000116627.1, intron 3 of 3) protein_coding-intron (ENSMUSG00000052632.16, intron 1 of 9) -18368 ENSMUSG00000092229.3 ENSMUSG00000092229 ENSMUST00000174304 Gm5977 transcribed_unprocessed_pseudogene Interval_158002 chr8 77847080 77847346 + 0 NA Intergenic Intergenic 39678 ENSMUSG00000087761.1 ENSMUSG00000087761 ENSMUST00000157136 Gm23981 snRNA Interval_52663 chr14 48366829 48367916 + 0 NA Intergenic Intergenic -2970 ENSMUSG00000080522.1 ENSMUSG00000080522 ENSMUST00000116872 Gm23881 miRNA Interval_56510 chr14 119530961 119531264 + 0 NA intron (ENSMUSG00000053465.6, intron 1 of 1) protein_coding-intron (ENSMUSG00000053465.6, intron 1 of 1) -112900 ENSMUSG00000115196.1 ENSMUSG00000115196 ENSMUST00000226465 Gm6212 processed_pseudogene Interval_97000 chr2 130397066 130398319 + 0 NA promoter-TSS (ENSMUSG00000027408.7) protein_coding-promoter-TSS (ENSMUSG00000027408.7) -2745 ENSMUSG00000082985.2 ENSMUSG00000082985 ENSMUST00000120139 Gm14042 processed_pseudogene Interval_68062 chr16 64805868 64806671 + 0 NA intron (ENSMUSG00000047141.5, intron 3 of 8) protein_coding-intron (ENSMUSG00000047141.5, intron 3 of 8) -39613 ENSMUSG00000059920.9 ENSMUSG00000059920 ENSMUST00000076991 4930453N24Rik protein_coding Interval_68499 chr16 78246366 78246682 + 0 NA Intergenic Intergenic -4529 ENSMUSG00000116798.1 ENSMUSG00000116798 ENSMUST00000231924 Gm49591 processed_pseudogene Interval_19997 chr10 111824099 111824351 + 0 NA intron (ENSMUSG00000112430.1, intron 3 of 3) lincRNA-intron (ENSMUSG00000112430.1, intron 3 of 3) 5719 ENSMUSG00000112321.1 ENSMUSG00000112321 ENSMUST00000220048 Gm47866 processed_pseudogene Interval_57050 chr15 5134290 5135716 + 0 NA Intergenic Intergenic -8888 ENSMUSG00000050697.9 ENSMUSG00000050697 ENSMUST00000228218 Prkaa1 protein_coding Interval_57967 chr15 25779736 25781803 + 0 NA TTS (ENSMUSG00000022272.17) protein_coding-TTS (ENSMUSG00000022272.17) 12213 ENSMUSG00000022272.17 ENSMUSG00000022272 ENSMUST00000145587 Myo10 protein_coding Interval_114230 chr4 69195493 69195963 + 0 NA Intergenic Intergenic 85057 ENSMUSG00000065815.1 ENSMUSG00000065815 ENSMUST00000083881 Gm24697 snRNA Interval_63823 chr16 3777556 3778652 + 0 NA intron (ENSMUSG00000115961.1, intron 2 of 2) lincRNA-intron (ENSMUSG00000115961.1, intron 2 of 2) 3324 ENSMUSG00000118410.1 ENSMUSG00000118410 ENSMUST00000238641 AC139347.1 unitary_pseudogene Interval_135590 chr6 41097363 41098647 + 0 NA Intergenic Intergenic 6065 ENSMUSG00000091671.1 ENSMUSG00000091671 ENSMUST00000168322 Trbv10 TR_V_pseudogene Interval_138578 chr6 89525861 89526371 + 0 NA TTS (ENSMUSG00000107680.1) TEC-TTS (ENSMUSG00000107680.1) 1339 ENSMUSG00000107680.1 ENSMUSG00000107680 ENSMUST00000205126 Gm43903 TEC Interval_89883 chr2 26202183 26203301 + 0 NA exon (ENSMUSG00000026934.15, exon 1 of 3) protein_coding-exon (ENSMUSG00000026934.15, exon 1 of 3) 699 ENSMUSG00000026934.15 ENSMUSG00000026934 ENSMUST00000149637 Lhx3 protein_coding Interval_57120 chr15 6707479 6709530 + 0 NA intron (ENSMUSG00000050310.9, intron 1 of 9) protein_coding-intron (ENSMUSG00000050310.9, intron 1 of 37) 125 ENSMUSG00000050310.9 ENSMUSG00000050310 ENSMUST00000061656 Rictor protein_coding Interval_174318 chrX 144358559 144359294 + 0 NA intron (ENSMUSG00000041718.16, intron 23 of 25) protein_coding-intron (ENSMUSG00000041718.16, intron 10 of 13) -37671 ENSMUSG00000080922.1 ENSMUSG00000080922 ENSMUST00000121333 Gm2214 processed_pseudogene Interval_23076 chr11 19757039 19757342 + 0 NA Intergenic Intergenic -7124 ENSMUSG00000083601.1 ENSMUSG00000083601 ENSMUST00000118065 Gm12028 processed_pseudogene Interval_111960 chr4 32845795 32845966 + 0 NA intron (ENSMUSG00000040183.13, intron 1 of 3) protein_coding-intron (ENSMUSG00000040183.13, intron 3 of 16) 14803 ENSMUSG00000040183.13 ENSMUSG00000040183 ENSMUST00000149650 Ankrd6 protein_coding Interval_67950 chr16 60538216 60538516 + 0 NA intron (ENSMUSG00000055540.15, intron 1 of 2) protein_coding-intron (ENSMUSG00000055540.15, intron 1 of 17) -66400 ENSMUSG00000089685.7 ENSMUSG00000089685 ENSMUST00000159613 Gm9017 antisense Interval_43874 chr13 37777507 37779345 + 0 NA promoter-TSS (ENSMUSG00000039087.17) protein_coding-promoter-TSS (ENSMUSG00000039087.17) 16678 ENSMUSG00000114800.1 ENSMUSG00000114800 ENSMUST00000224394 Gm31600 lincRNA Interval_59792 chr15 59306470 59307261 + 0 NA promoter-TSS (ENSMUSG00000098528.1) transcribed_processed_pseudogene-promoter-TSS (ENSMUSG00000098528.1) -3988 ENSMUSG00000098528.1 ENSMUSG00000098528 ENSMUST00000184208 Zfp572 transcribed_processed_pseudogene Interval_111559 chr4 23273556 23273853 + 0 NA intron (ENSMUSG00000087098.1, intron 1 of 4) lincRNA-intron (ENSMUSG00000087098.1, intron 1 of 4) 12920 ENSMUSG00000087098.1 ENSMUSG00000087098 ENSMUST00000131639 Gm11884 lincRNA Interval_128933 chr5 116165435 116166027 + 0 NA intron (ENSMUSG00000043913.14, intron 5 of 13) protein_coding-intron (ENSMUSG00000043913.14, intron 5 of 13) 42117 ENSMUSG00000086655.1 ENSMUSG00000086655 ENSMUST00000127792 C330018A13Rik antisense Interval_75325 chr17 65872646 65872998 + 0 NA intron (ENSMUSG00000024096.17, intron 1 of 9) protein_coding-intron (ENSMUSG00000024096.17, intron 1 of 9) 11581 ENSMUSG00000024096.17 ENSMUSG00000024096 ENSMUST00000233784 Ralbp1 protein_coding Interval_98182 chr2 149554434 149555606 + 0 NA Intergenic Intergenic 11265 ENSMUSG00000089270.1 ENSMUSG00000089270 ENSMUST00000158645 Gm24551 snoRNA Interval_142103 chr6 137158345 137158543 + 0 NA intron (ENSMUSG00000030222.13, intron 2 of 2) protein_coding-intron (ENSMUSG00000030222.13, intron 2 of 4) -11515 ENSMUSG00000107567.1 ENSMUSG00000107567 ENSMUST00000203679 4930480K02Rik TEC Interval_39433 chr12 87364554 87364871 + 0 NA intron (ENSMUSG00000021036.10, intron 2 of 4) protein_coding-intron (ENSMUSG00000021036.10, intron 2 of 11) -7280 ENSMUSG00000113648.1 ENSMUSG00000113648 ENSMUST00000221879 Gm48806 processed_pseudogene Interval_35019 chr12 16703011 16703293 + 0 NA intron (ENSMUSG00000036523.16, intron 2 of 2) protein_coding-intron (ENSMUSG00000036523.16, intron 17 of 32) 30912 ENSMUSG00000114049.1 ENSMUSG00000114049 ENSMUST00000223113 Gm48140 antisense Interval_8940 chr1 152531307 152531957 + 0 NA intron (ENSMUSG00000026482.13, intron 14 of 18) protein_coding-intron (ENSMUSG00000026482.13, intron 13 of 17) 21412 ENSMUSG00000026482.13 ENSMUSG00000026482 ENSMUST00000149536 Rgl1 protein_coding Interval_32814 chr11 111023552 111023834 + 0 NA promoter-TSS (ENSMUSG00000051497.15) protein_coding-promoter-TSS (ENSMUSG00000051497.15) -42471 ENSMUSG00000041695.2 ENSMUSG00000041695 ENSMUST00000042970 Kcnj2 protein_coding Interval_62330 chr15 90237881 90238192 + 0 NA Intergenic Intergenic 13676 ENSMUSG00000099319.1 ENSMUSG00000099319 ENSMUST00000183650 Mir7648 miRNA Interval_20091 chr10 114119057 114119892 + 0 NA Intergenic Intergenic 23747 ENSMUSG00000112921.1 ENSMUSG00000112921 ENSMUST00000218197 Gm48104 TEC Interval_114456 chr4 78606327 78606712 + 0 NA Intergenic Intergenic 55069 ENSMUSG00000085840.1 ENSMUSG00000085840 ENSMUST00000126647 Gm11261 lincRNA Interval_143911 chr7 17127394 17127809 + 0 NA intron (ENSMUSG00000066760.12, intron 5 of 5) protein_coding-intron (ENSMUSG00000066760.12, intron 5 of 5) 11871 ENSMUSG00000108694.1 ENSMUSG00000108694 ENSMUST00000205267 Gm7287 processed_pseudogene Interval_59567 chr15 55407544 55407989 + 0 NA exon (ENSMUSG00000022371.16, exon 16 of 48) protein_coding-exon (ENSMUSG00000022371.16, exon 16 of 48) 31254 ENSMUSG00000101568.1 ENSMUSG00000101568 ENSMUST00000187158 1700040F17Rik antisense Interval_109803 chr3 147391126 147391361 + 0 NA intron (ENSMUSG00000106023.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000106023.1, intron 1 of 2) 1531 ENSMUSG00000106023.1 ENSMUSG00000106023 ENSMUST00000196485 Gm36831 lincRNA Interval_24853 chr11 40456558 40457014 + 0 NA Intergenic Intergenic 18891 ENSMUSG00000085588.1 ENSMUSG00000085588 ENSMUST00000123904 3110004A20Rik lincRNA Interval_104439 chr3 65665815 65666771 + 0 NA promoter-TSS (ENSMUSG00000074579.14) protein_coding-promoter-TSS (ENSMUSG00000074579.14) 25 ENSMUSG00000074579.14 ENSMUSG00000074579 ENSMUST00000161851 Lekr1 protein_coding Interval_41582 chr12 116540514 116540857 + 0 NA intron (ENSMUSG00000056553.14, intron 1 of 4) protein_coding-intron (ENSMUSG00000056553.14, intron 1 of 22) -32802 ENSMUSG00000101236.1 ENSMUSG00000101236 ENSMUST00000189273 Gm6750 processed_pseudogene Interval_28079 chr11 72681413 72681732 + 0 NA intron (ENSMUSG00000020794.13, intron 6 of 6) protein_coding-intron (ENSMUSG00000020794.13, intron 5 of 5) -8434 ENSMUSG00000020790.14 ENSMUSG00000020790 ENSMUST00000132889 Ankfy1 protein_coding Interval_95940 chr2 118569091 118569427 + 0 NA Intergenic Intergenic -23943 ENSMUSG00000040093.16 ENSMUSG00000040093 ENSMUST00000138342 Bmf protein_coding Interval_95878 chr2 117871696 117872140 + 0 NA intron (ENSMUSG00000087203.7, intron 8 of 9) processed_transcript-intron (ENSMUSG00000087203.7, intron 8 of 9) 49990 ENSMUSG00000086221.1 ENSMUSG00000086221 ENSMUST00000149239 4930412B13Rik lincRNA Interval_108009 chr3 119768469 119768738 + 0 NA intron (ENSMUSG00000028134.11, intron 2 of 13) protein_coding-intron (ENSMUSG00000028134.11, intron 2 of 13) 11265 ENSMUSG00000106075.1 ENSMUSG00000106075 ENSMUST00000199701 Gm42804 processed_pseudogene Interval_144276 chr7 24207146 24209063 + 0 NA promoter-TSS (ENSMUSG00000087598.9) protein_coding-promoter-TSS (ENSMUSG00000087598.9) -33 ENSMUSG00000087598.9 ENSMUSG00000087598 ENSMUST00000142218 Zfp111 protein_coding Interval_113566 chr4 56747361 56747702 + 0 NA Intergenic Intergenic 4118 ENSMUSG00000070979.5 ENSMUSG00000070979 ENSMUST00000095079 Actl7a protein_coding Interval_84223 chr19 8859144 8859402 + 0 NA Intergenic Intergenic 8505 ENSMUSG00000071656.7 ENSMUSG00000071656 ENSMUST00000096257 Lrrn4cl protein_coding Interval_115124 chr4 91235676 91236346 + 0 NA Intergenic Intergenic 79329 ENSMUSG00000081876.1 ENSMUSG00000081876 ENSMUST00000119935 Gm12644 processed_pseudogene Interval_750 chr1 10603219 10604147 + 0 NA intron (ENSMUSG00000042501.12, intron 1 of 9) protein_coding-intron (ENSMUSG00000042501.12, intron 1 of 10) -48023 ENSMUSG00000094979.1 ENSMUSG00000094979 ENSMUST00000179958 Gm25253 snRNA Interval_19623 chr10 105899841 105900044 + 0 NA Intergenic Intergenic 29801 ENSMUSG00000088415.1 ENSMUSG00000088415 ENSMUST00000157790 Gm24237 snoRNA Interval_68921 chr16 88751262 88751602 + 0 NA exon (ENSMUSG00000050224.3, exon 1 of 1) protein_coding-exon (ENSMUSG00000050224.3, exon 1 of 1) 203 ENSMUSG00000050224.3 ENSMUSG00000050224 ENSMUST00000053149 Krtap13 protein_coding Interval_75955 chr17 73724071 73724504 + 0 NA Intergenic Intergenic -14221 ENSMUSG00000024064.14 ENSMUSG00000024064 ENSMUST00000146565 Galnt14 protein_coding Interval_133619 chr6 7699860 7700550 + 0 NA Intergenic Intergenic -7333 ENSMUSG00000029752.12 ENSMUSG00000029752 ENSMUST00000148349 Asns protein_coding Interval_165992 chr9 55251476 55252423 + 0 NA intron (ENSMUSG00000032311.17, intron 1 of 6) protein_coding-intron (ENSMUSG00000032311.17, intron 3 of 3) 31676 ENSMUSG00000032311.17 ENSMUSG00000032311 ENSMUST00000133659 Nrg4 protein_coding Interval_161157 chr8 117863975 117864409 + 0 NA Intergenic Intergenic 62130 ENSMUSG00000074065.4 ENSMUSG00000074065 ENSMUST00000098368 Gm10617 pseudogene Interval_24993 chr11 42683822 42684062 + 0 NA Intergenic Intergenic -213553 ENSMUSG00000084627.1 ENSMUSG00000084627 ENSMUST00000122678 Gm25543 misc_RNA Interval_20738 chr10 120660482 120661499 + 0 NA intron (ENSMUSG00000112716.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000112716.1, intron 1 of 2) 6027 ENSMUSG00000103213.1 ENSMUSG00000103213 ENSMUST00000194273 Gm38289 TEC Interval_26560 chr11 58893001 58895846 + 0 NA intron (ENSMUSG00000037001.10, intron 3 of 4) protein_coding-intron (ENSMUSG00000037001.10, intron 3 of 4) 4713 ENSMUSG00000087654.1 ENSMUSG00000087654 ENSMUST00000132394 Gm12256 antisense Interval_137013 chr6 66400761 66401557 + 0 NA Intergenic Intergenic 2413 ENSMUSG00000107631.1 ENSMUSG00000107631 ENSMUST00000203616 Gm44233 processed_pseudogene Interval_70399 chr17 9759483 9759924 + 0 NA intron (ENSMUSG00000117264.1, intron 3 of 3) processed_transcript-intron (ENSMUSG00000117264.1, intron 3 of 3) 16163 ENSMUSG00000117264.1 ENSMUSG00000117264 ENSMUST00000233594 4930452A19Rik processed_transcript Interval_131110 chr5 135204322 135204541 + 0 NA intron (ENSMUSG00000002748.7, intron 3 of 18) protein_coding-intron (ENSMUSG00000002748.7, intron 3 of 18) -3557 ENSMUSG00000080473.1 ENSMUSG00000080473 ENSMUST00000116823 Gm25315 miRNA Interval_114454 chr4 78513284 78513740 + 0 NA Intergenic Intergenic 148076 ENSMUSG00000085840.1 ENSMUSG00000085840 ENSMUST00000126647 Gm11261 lincRNA Interval_103189 chr3 36495605 36497089 + 0 NA Intergenic Intergenic 10462 ENSMUSG00000085320.1 ENSMUSG00000085320 ENSMUST00000140203 Gm11548 lincRNA Interval_172830 chrX 50772655 50773074 + 0 NA Intergenic Intergenic -105524 ENSMUSG00000031112.10 ENSMUSG00000031112 ENSMUST00000146956 Stk26 protein_coding Interval_154546 chr8 19275415 19275867 + 0 NA Intergenic Intergenic 4205 ENSMUSG00000081901.1 ENSMUSG00000081901 ENSMUST00000119160 Gm15357 unprocessed_pseudogene Interval_104107 chr3 58646222 58646522 + 0 NA Intergenic Intergenic -5681 ENSMUSG00000105021.1 ENSMUSG00000105021 ENSMUST00000198523 Gm8234 processed_pseudogene Interval_99349 chr2 159997470 159997672 + 0 NA Intergenic Intergenic -19082 ENSMUSG00000086653.1 ENSMUSG00000086653 ENSMUST00000140319 9130015L21Rik lincRNA Interval_70037 chr17 4883263 4883555 + 0 NA intron (ENSMUSG00000116813.1, intron 2 of 2) lincRNA-intron (ENSMUSG00000116813.1, intron 2 of 2) 2783 ENSMUSG00000116620.1 ENSMUSG00000116620 ENSMUST00000231980 Gm4828 processed_pseudogene Interval_27812 chr11 70136187 70138038 + 0 NA TTS (ENSMUSG00000040950.13) protein_coding-TTS (ENSMUSG00000040950.13) 6688 ENSMUSG00000040950.13 ENSMUSG00000040950 ENSMUST00000108584 Mgl2 protein_coding Interval_73828 chr17 44230695 44231179 + 0 NA intron (ENSMUSG00000023959.10, intron 1 of 5) protein_coding-intron (ENSMUSG00000023959.10, intron 1 of 5) 96169 ENSMUSG00000023959.10 ENSMUSG00000023959 ENSMUST00000233193 Clic5 protein_coding Interval_172585 chrX 37084704 37086046 + 0 NA promoter-TSS (ENSMUSG00000079641.3) protein_coding-promoter-TSS (ENSMUSG00000079641.3) -209 ENSMUSG00000079641.3 ENSMUSG00000079641 ENSMUST00000131149 Rpl39 protein_coding Interval_32637 chr11 109350112 109350545 + 0 NA intron (ENSMUSG00000099630.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000099630.1, intron 1 of 1) 3489 ENSMUSG00000099630.1 ENSMUSG00000099630 ENSMUST00000190043 1700096J18Rik lincRNA Interval_97302 chr2 133346913 133347540 + 0 NA Intergenic Intergenic 16302 ENSMUSG00000098578.1 ENSMUSG00000098578 ENSMUST00000184570 Gm27449 snRNA Interval_147873 chr7 74744653 74745583 + 0 NA Intergenic Intergenic -20869 ENSMUSG00000108468.1 ENSMUSG00000108468 ENSMUST00000206203 Gm30459 lincRNA Interval_18625 chr10 88626170 88627870 + 0 NA Intergenic Intergenic -14359 ENSMUSG00000112231.1 ENSMUSG00000112231 ENSMUST00000219481 Gm8435 processed_pseudogene Interval_12194 chr1 190763908 190764551 + 0 NA intron (ENSMUSG00000089872.10, intron 6 of 12) protein_coding-intron (ENSMUSG00000089872.10, intron 6 of 12) 135488 ENSMUSG00000089872.10 ENSMUSG00000089872 ENSMUST00000159066 Rps6kc1 protein_coding Interval_106812 chr3 101034291 101034922 + 0 NA Intergenic Intergenic -12430 ENSMUSG00000086564.9 ENSMUSG00000086564 ENSMUST00000167086 Cd101 protein_coding Interval_68892 chr16 87919858 87920064 + 0 NA intron (ENSMUSG00000022935.16, intron 15 of 16) protein_coding-intron (ENSMUSG00000022935.16, intron 14 of 15) 132389 ENSMUSG00000055972.5 ENSMUSG00000055972 ENSMUST00000189929 2810407A14Rik lincRNA Interval_100283 chr2 168156293 168156675 + 0 NA intron (ENSMUSG00000118526.2, intron 7 of 7) unitary_pseudogene-intron (ENSMUSG00000118526.2, intron 7 of 7) -1971 ENSMUSG00000087648.1 ENSMUSG00000087648 ENSMUST00000129713 E130018N17Rik lincRNA Interval_47014 chr13 74363374 74363622 + 0 NA TTS (ENSMUSG00000021578.17) protein_coding-TTS (ENSMUSG00000021578.17) 507 ENSMUSG00000021579.4 ENSMUSG00000021579 ENSMUST00000022064 Lrrc14b protein_coding Interval_95158 chr2 104422229 104423253 + 0 NA Intergenic Intergenic 6199 ENSMUSG00000084516.1 ENSMUSG00000084516 ENSMUST00000122567 Mir1902 miRNA Interval_33821 chr11 118737996 118740233 + 0 NA intron (ENSMUSG00000025576.17, intron 2 of 14) protein_coding-intron (ENSMUSG00000025576.17, intron 2 of 14) -52258 ENSMUSG00000085059.1 ENSMUSG00000085059 ENSMUST00000146016 Gm11750 lincRNA Interval_81233 chr18 56661894 56662645 + 0 NA Intergenic Intergenic -5509 ENSMUSG00000118275.1 ENSMUSG00000118275 ENSMUST00000235398 Gm50289 processed_pseudogene Interval_129568 chr5 120988268 120988822 + 0 NA intron (ENSMUSG00000029608.10, intron 2 of 21) protein_coding-intron (ENSMUSG00000029608.10, intron 2 of 21) -16198 ENSMUSG00000106841.1 ENSMUSG00000106841 ENSMUST00000201506 Gm42656 TEC Interval_49995 chr13 119428210 119429813 + 0 NA promoter-TSS (ENSMUSG00000025451.15) protein_coding-promoter-TSS (ENSMUSG00000025451.15) -147 ENSMUSG00000025451.15 ENSMUSG00000025451 ENSMUST00000173339 Paip1 protein_coding Interval_144041 chr7 19148919 19150107 + 0 NA promoter-TSS (ENSMUSG00000030407.2) protein_coding-promoter-TSS (ENSMUSG00000030407.2) -346 ENSMUSG00000040824.3 ENSMUSG00000040824 ENSMUST00000206766 Snrpd2 protein_coding Interval_113261 chr4 52542782 52543901 + 0 NA Intergenic Intergenic -46097 ENSMUSG00000061619.3 ENSMUSG00000061619 ENSMUST00000114578 Vma21-ps processed_pseudogene Interval_43969 chr13 38537394 38537719 + 0 NA promoter-TSS (ENSMUSG00000114331.1) lincRNA-promoter-TSS (ENSMUSG00000114331.1) -876 ENSMUSG00000114331.1 ENSMUSG00000114331 ENSMUST00000225265 Gm48056 lincRNA Interval_20111 chr10 114898364 114898941 + 0 NA Intergenic Intergenic 12383 ENSMUSG00000084501.1 ENSMUSG00000084501 ENSMUST00000122552 Gm25319 misc_RNA Interval_172385 chrX 16894485 16895058 + 0 NA exon (ENSMUSG00000040138.7, exon 2 of 3) protein_coding-exon (ENSMUSG00000040138.7, exon 2 of 3) 17003 ENSMUSG00000040138.7 ENSMUSG00000040138 ENSMUST00000040134 Ndp protein_coding Interval_143915 chr7 17205433 17206416 + 0 NA intron (ENSMUSG00000023159.8, intron 2 of 4) protein_coding-intron (ENSMUSG00000023159.8, intron 2 of 4) 2447 ENSMUSG00000023159.8 ENSMUSG00000023159 ENSMUST00000075934 Psg29 protein_coding Interval_69568 chr16 94331805 94332296 + 0 NA intron (ENSMUSG00000022941.8, intron 2 of 3) protein_coding-intron (ENSMUSG00000022941.8, intron 2 of 3) 3630 ENSMUSG00000022941.8 ENSMUSG00000022941 ENSMUST00000023660 Ripply3 protein_coding Interval_155985 chr8 41489714 41489936 + 0 NA Intergenic Intergenic -76903 ENSMUSG00000031590.8 ENSMUSG00000031590 ENSMUST00000210873 Frg1 protein_coding Interval_229 KV575242.1 156245 157142 + 0 NA NA NA NA NA Interval_71364 chr17 22711178 22711667 + 0 NA Intergenic Intergenic 5515 ENSMUSG00000117183.1 ENSMUSG00000117183 ENSMUST00000232973 Gm20008 processed_pseudogene Interval_23016 chr11 18945455 18946900 + 0 NA intron (ENSMUSG00000020160.18, intron 7 of 11) protein_coding-intron (ENSMUSG00000020160.18, intron 7 of 12) -56337 ENSMUSG00000104244.1 ENSMUSG00000104244 ENSMUST00000195805 2900018N21Rik TEC Interval_59732 chr15 58945968 58946839 + 0 NA intron (ENSMUSG00000022353.10, intron 2 of 3) protein_coding-intron (ENSMUSG00000022353.10, intron 12 of 14) 12595 ENSMUSG00000022354.4 ENSMUSG00000022354 ENSMUST00000228595 Ndufb9 protein_coding Interval_85419 chr19 25635685 25636355 + 0 NA Intergenic Intergenic 25719 ENSMUSG00000042372.5 ENSMUSG00000042372 ENSMUST00000048935 Dmrt3 protein_coding Interval_83231 chr18 82898596 82899474 + 0 NA Intergenic Intergenic -3043 ENSMUSG00000117762.1 ENSMUSG00000117762 ENSMUST00000236957 Gm30889 lincRNA Interval_58488 chr15 35164574 35166228 + 0 NA intron (ENSMUSG00000022329.15, intron 1 of 10) protein_coding-intron (ENSMUSG00000022329.15, intron 1 of 10) -35403 ENSMUSG00000115345.1 ENSMUSG00000115345 ENSMUST00000228112 Gm33497 lincRNA Interval_57952 chr15 25716977 25717838 + 0 NA intron (ENSMUSG00000022272.17, intron 3 of 21) protein_coding-intron (ENSMUSG00000022272.17, intron 4 of 40) 35609 ENSMUSG00000089639.1 ENSMUSG00000089639 ENSMUST00000161524 Gm2862 processed_pseudogene Interval_166064 chr9 56179911 56180932 + 0 NA Intergenic Intergenic -14944 ENSMUSG00000032324.11 ENSMUSG00000032324 ENSMUST00000216320 Tspan3 protein_coding Interval_26485 chr11 58109794 58110906 + 0 NA intron (ENSMUSG00000020515.13, intron 2 of 2) protein_coding-intron (ENSMUSG00000020515.13, intron 2 of 6) 5984 ENSMUSG00000020515.13 ENSMUSG00000020515 ENSMUST00000133923 Cnot8 protein_coding Interval_141670 chr6 133043019 133043291 + 0 NA Intergenic Intergenic -6054 ENSMUSG00000030196.3 ENSMUSG00000030196 ENSMUST00000032317 Tas2r103 protein_coding Interval_75565 chr17 68157899 68158539 + 0 NA intron (ENSMUSG00000117243.1, intron 1 of 3) lincRNA-intron (ENSMUSG00000117243.1, intron 1 of 3) 15337 ENSMUSG00000117243.1 ENSMUSG00000117243 ENSMUST00000232839 Gm49944 lincRNA Interval_129519 chr5 120686609 120687107 + 0 NA intron (ENSMUSG00000029603.15, intron 1 of 7) protein_coding-intron (ENSMUSG00000029603.15, intron 3 of 9) -4779 ENSMUSG00000029603.15 ENSMUSG00000029603 ENSMUST00000124079 Dtx1 protein_coding Interval_156317 chr8 47348076 47348280 + 0 NA intron (ENSMUSG00000038143.16, intron 7 of 7) protein_coding-intron (ENSMUSG00000038143.16, intron 1 of 4) 65659 ENSMUSG00000038143.16 ENSMUSG00000038143 ENSMUST00000181417 Stox2 protein_coding Interval_75352 chr17 66076139 66077685 + 0 NA promoter-TSS (ENSMUSG00000034647.15) protein_coding-promoter-TSS (ENSMUSG00000034647.15) -9182 ENSMUSG00000094158.1 ENSMUSG00000094158 ENSMUST00000083372 Gm23264 snRNA Interval_168358 chr9 79538581 79538850 + 0 NA Intergenic Intergenic -19413 ENSMUSG00000111765.1 ENSMUSG00000111765 ENSMUST00000217201 Gm10635 lincRNA Interval_102499 chr3 27222443 27222928 + 0 NA TTS (ENSMUSG00000027698.14) protein_coding-TTS (ENSMUSG00000027698.14) 34244 ENSMUSG00000027698.14 ENSMUSG00000027698 ENSMUST00000140872 Nceh1 protein_coding Interval_11941 chr1 187352496 187352670 + 0 NA TTS (ENSMUSG00000039210.16) protein_coding-TTS (ENSMUSG00000039210.16) 24886 ENSMUSG00000104245.1 ENSMUSG00000104245 ENSMUST00000192285 Gm38155 antisense Interval_70378 chr17 9484225 9485165 + 0 NA Intergenic Intergenic -62231 ENSMUSG00000101935.1 ENSMUSG00000101935 ENSMUST00000177906 Gm17748 processed_pseudogene Interval_167544 chr9 70366756 70366996 + 0 NA intron (ENSMUSG00000032220.10, intron 20 of 28) protein_coding-intron (ENSMUSG00000032220.10, intron 19 of 27) 38877 ENSMUSG00000093763.1 ENSMUSG00000093763 ENSMUST00000176002 Mir5626 miRNA Interval_63971 chr16 4913615 4914473 + 0 NA intron (ENSMUSG00000022517.17, intron 5 of 16) protein_coding-intron (ENSMUSG00000022517.17, intron 5 of 15) -24717 ENSMUSG00000022516.10 ENSMUSG00000022516 ENSMUST00000230224 Nudt16l1 protein_coding Interval_47893 chr13 94213283 94213500 + 0 NA intron (ENSMUSG00000021687.14, intron 5 of 7) protein_coding-intron (ENSMUSG00000021687.14, intron 6 of 8) 33167 ENSMUSG00000021687.14 ENSMUSG00000021687 ENSMUST00000138255 Scamp1 protein_coding Interval_160837 chr8 113523477 113523848 + 0 NA Intergenic Intergenic -4056 ENSMUSG00000077289.1 ENSMUSG00000077289 ENSMUST00000104101 Gm25766 snoRNA Interval_168418 chr9 80164204 80165459 + 0 NA promoter-TSS (ENSMUSG00000033577.18) protein_coding-promoter-TSS (ENSMUSG00000033577.18) -396 ENSMUSG00000033577.18 ENSMUSG00000033577 ENSMUST00000138650 Myo6 protein_coding Interval_5593 chr1 90028307 90028512 + 0 NA Intergenic Intergenic 26551 ENSMUSG00000026301.16 ENSMUSG00000026301 ENSMUST00000186522 Iqca protein_coding Interval_29081 chr11 80199894 80200810 + 0 NA TTS (ENSMUSG00000020707.6) protein_coding-TTS (ENSMUSG00000020707.6) 16129 ENSMUSG00000020707.6 ENSMUSG00000020707 ENSMUST00000134909 Rnf135 protein_coding Interval_132171 chr5 143071306 143072234 + 0 NA intron (ENSMUSG00000045078.12, intron 11 of 16) protein_coding-intron (ENSMUSG00000045078.12, intron 11 of 16) 4117 ENSMUSG00000105714.1 ENSMUSG00000105714 ENSMUST00000200421 Gm43380 processed_pseudogene Interval_173087 chrX 71228190 71228395 + 0 NA intron (ENSMUSG00000031337.16, intron 1 of 4) protein_coding-intron (ENSMUSG00000031337.16, intron 1 of 13) 17525 ENSMUSG00000031337.16 ENSMUSG00000031337 ENSMUST00000129722 Mtm1 protein_coding Interval_84363 chr19 10381725 10382381 + 0 NA Intergenic Intergenic -7430 ENSMUSG00000024743.16 ENSMUSG00000024743 ENSMUST00000235717 Syt7 protein_coding Interval_12737 chr10 4598406 4599122 + 0 NA Intergenic Intergenic -12829 ENSMUSG00000019768.16 ENSMUSG00000019768 ENSMUST00000137012 Esr1 protein_coding Interval_99933 chr2 165992167 165993587 + 0 NA promoter-TSS (ENSMUSG00000087351.1) lincRNA-promoter-TSS (ENSMUSG00000087351.1) -360 ENSMUSG00000087351.1 ENSMUSG00000087351 ENSMUST00000146963 Gm11464 lincRNA Interval_136153 chr6 51543577 51545822 + 0 NA exon (ENSMUSG00000038301.15, exon 1 of 7) protein_coding-intron (ENSMUSG00000038301.15, intron 1 of 6) 176 ENSMUSG00000038301.15 ENSMUSG00000038301 ENSMUST00000149024 Snx10 protein_coding Interval_52783 chr14 49884173 49885352 + 0 NA Intergenic Intergenic 17237 ENSMUSG00000048933.8 ENSMUSG00000048933 ENSMUST00000213271 Olfr722 protein_coding Interval_106629 chr3 97928907 97929352 + 0 NA Intergenic Intergenic -1044 ENSMUSG00000074388.3 ENSMUSG00000074388 ENSMUST00000098828 Gm5544 lincRNA Interval_61240 chr15 80169322 80169988 + 0 NA Intergenic Intergenic -4066 ENSMUSG00000042428.6 ENSMUSG00000042428 ENSMUST00000044970 Mgat3 protein_coding Interval_49402 chr13 111747906 111749985 + 0 NA exon (ENSMUSG00000021754.17, exon 20 of 20) protein_coding-exon (ENSMUSG00000021754.17, exon 20 of 20) 2428 ENSMUSG00000021754.17 ENSMUSG00000021754 ENSMUST00000145055 Map3k1 protein_coding Interval_74874 chr17 57010898 57012143 + 0 NA promoter-TSS (ENSMUSG00000002658.9) protein_coding-promoter-TSS (ENSMUSG00000002658.9) 51 ENSMUSG00000109739.1 ENSMUSG00000109739 ENSMUST00000210548 Gm17949 protein_coding Interval_169516 chr9 98716113 98716317 + 0 NA Intergenic Intergenic -9949 ENSMUSG00000102458.1 ENSMUSG00000102458 ENSMUST00000195532 Pisrt1 TEC Interval_99086 chr2 157085091 157085482 + 0 NA Intergenic Intergenic -1769 ENSMUSG00000074628.9 ENSMUSG00000074628 ENSMUST00000099140 Tldc2 protein_coding Interval_143202 chr7 4460529 4461459 + 0 NA exon (ENSMUSG00000006154.13, exon 1 of 6) protein_coding-exon (ENSMUSG00000006154.13, exon 1 of 6) 279 ENSMUSG00000006154.13 ENSMUSG00000006154 ENSMUST00000164987 Eps8l1 protein_coding Interval_8799 chr1 151245221 151245467 + 0 NA Intergenic Intergenic 15570 ENSMUSG00000088498.1 ENSMUSG00000088498 ENSMUST00000157873 Gm24402 snRNA Interval_17155 chr10 72833504 72833839 + 0 NA Intergenic Intergenic 115740 ENSMUSG00000112862.1 ENSMUSG00000112862 ENSMUST00000219599 Gm47094 processed_pseudogene Interval_45024 chr13 51573844 51574618 + 0 NA Intergenic Intergenic -4744 ENSMUSG00000021448.8 ENSMUSG00000021448 ENSMUST00000221850 Shc3 protein_coding Interval_32157 chr11 105731451 105731747 + 0 NA intron (ENSMUSG00000053580.16, intron 4 of 4) protein_coding-intron (ENSMUSG00000053580.16, intron 4 of 25) -41919 ENSMUSG00000083465.1 ENSMUSG00000083465 ENSMUST00000117842 Gm11652 processed_pseudogene Interval_166676 chr9 61843778 61844722 + 0 NA Intergenic Intergenic -7454 ENSMUSG00000110968.1 ENSMUSG00000110968 ENSMUST00000213861 Gm19208 processed_pseudogene Interval_102750 chr3 30780347 30781186 + 0 NA Intergenic Intergenic 12798 ENSMUSG00000097786.3 ENSMUSG00000097786 ENSMUST00000180833 4933429H19Rik antisense Interval_58018 chr15 26279517 26281004 + 0 NA Intergenic Intergenic -107459 ENSMUSG00000022269.13 ENSMUSG00000022269 ENSMUST00000155819 Marchf11 protein_coding Interval_149027 chr7 92362187 92362678 + 0 NA intron (ENSMUSG00000052572.19, intron 13 of 21) protein_coding-intron (ENSMUSG00000052572.19, intron 14 of 22) -45752 ENSMUSG00000109574.1 ENSMUSG00000109574 ENSMUST00000207479 B230206I08Rik TEC Interval_63250 chr15 99931659 99932171 + 0 NA promoter-TSS (ENSMUSG00000045350.15) protein_coding-promoter-TSS (ENSMUSG00000045350.15) 204 ENSMUSG00000096111.7 ENSMUSG00000096111 ENSMUST00000177831 Gm21917 antisense Interval_26939 chr11 61713063 61715235 + 0 NA intron (ENSMUSG00000042371.12, intron 5 of 13) protein_coding-intron (ENSMUSG00000042371.12, intron 6 of 15) 5797 ENSMUSG00000042371.12 ENSMUSG00000042371 ENSMUST00000148584 Slc5a10 protein_coding Interval_166647 chr9 61583582 61583918 + 0 NA Intergenic Intergenic 74027 ENSMUSG00000111381.1 ENSMUSG00000111381 ENSMUST00000213400 Gm34424 transcribed_processed_pseudogene Interval_124361 chr5 44647939 44649704 + 0 NA intron (ENSMUSG00000104894.4, intron 1 of 4) protein_coding-intron (ENSMUSG00000039706.11, intron 2 of 7) -2846 ENSMUSG00000104894.4 ENSMUSG00000104894 ENSMUST00000200281 Gm43507 antisense Interval_63224 chr15 99811140 99812583 + 0 NA intron (ENSMUSG00000023022.14, intron 1 of 7) protein_coding-intron (ENSMUSG00000023022.14, intron 4 of 10) -1279 ENSMUSG00000092014.1 ENSMUSG00000092014 ENSMUST00000170206 Gm4468 processed_pseudogene Interval_118053 chr4 128648389 128649194 + 0 NA Intergenic Intergenic 11320 ENSMUSG00000084891.1 ENSMUSG00000084891 ENSMUST00000141242 Gm12958 lincRNA Interval_64963 chr16 17553710 17554915 + 0 NA exon (ENSMUSG00000022759.15, exon 1 of 6) protein_coding-exon (ENSMUSG00000022759.15, exon 1 of 6) 6932 ENSMUSG00000022759.15 ENSMUSG00000022759 ENSMUST00000232637 Lrrc74b protein_coding Interval_104018 chr3 57381036 57381280 + 0 NA Intergenic Intergenic 18770 ENSMUSG00000105452.1 ENSMUSG00000105452 ENSMUST00000196683 Gm5276 processed_pseudogene Interval_3907 chr1 64690324 64691696 + 0 NA promoter-TSS (ENSMUSG00000070871.10) protein_coding-promoter-TSS (ENSMUSG00000070871.10) -173 ENSMUSG00000070871.10 ENSMUSG00000070871 ENSMUST00000094898 Ccnyl1 protein_coding Interval_120785 chr4 150640489 150640704 + 0 NA intron (ENSMUSG00000039838.11, intron 4 of 7) protein_coding-intron (ENSMUSG00000039838.11, intron 4 of 8) 3493 ENSMUSG00000039838.11 ENSMUSG00000039838 ENSMUST00000147706 Slc45a1 protein_coding Interval_37163 chr12 59084330 59084670 + 0 NA Intergenic Intergenic 3481 ENSMUSG00000066487.3 ENSMUSG00000066487 ENSMUST00000085368 Gm5786 processed_pseudogene Interval_49839 chr13 116970513 116970810 + 0 NA intron (ENSMUSG00000021725.9, intron 2 of 24) protein_coding-intron (ENSMUSG00000021725.9, intron 3 of 26) 54612 ENSMUSG00000021725.9 ENSMUSG00000021725 ENSMUST00000223833 Parp8 protein_coding Interval_110915 chr4 10137203 10137663 + 0 NA Intergenic Intergenic 178079 ENSMUSG00000082501.1 ENSMUSG00000082501 ENSMUST00000120635 Gm11835 processed_pseudogene Interval_16181 chr10 61272794 61273950 + 0 NA promoter-TSS (ENSMUSG00000059901.12) protein_coding-promoter-TSS (ENSMUSG00000059901.12) -130 ENSMUSG00000059901.12 ENSMUSG00000059901 ENSMUST00000120336 Adamts14 protein_coding Interval_8665 chr1 146558166 146558856 + 0 NA intron (ENSMUSG00000035131.14, intron 2 of 7) protein_coding-intron (ENSMUSG00000035131.14, intron 2 of 7) 60824 ENSMUSG00000035131.14 ENSMUSG00000035131 ENSMUST00000125331 Brinp3 protein_coding Interval_12367 chr1 192683468 192684141 + 0 NA intron (ENSMUSG00000037375.16, intron 8 of 11) protein_coding-intron (ENSMUSG00000037375.16, intron 8 of 11) -61767 ENSMUSG00000094131.1 ENSMUSG00000094131 ENSMUST00000082947 Gm22265 snRNA Interval_164850 chr9 42438487 42440129 + 0 NA intron (ENSMUSG00000037287.15, intron 5 of 7) protein_coding-intron (ENSMUSG00000037287.15, intron 5 of 7) -3544 ENSMUSG00000104589.1 ENSMUSG00000104589 ENSMUST00000196448 Gm44311 miRNA Interval_116842 chr4 117635182 117635473 + 0 NA intron (ENSMUSG00000033423.16, intron 6 of 7) protein_coding-intron (ENSMUSG00000033423.16, intron 7 of 8) 46926 ENSMUSG00000009640.11 ENSMUSG00000009640 ENSMUST00000127750 Dmap1 protein_coding Interval_99464 chr2 161533615 161533796 + 0 NA intron (ENSMUSG00000053141.16, intron 27 of 29) protein_coding-intron (ENSMUSG00000053141.16, intron 28 of 30) -19693 ENSMUSG00000100943.1 ENSMUSG00000100943 ENSMUST00000188874 Gm29229 processed_transcript Interval_145815 chr7 39535551 39536781 + 0 NA exon (ENSMUSG00000068959.6, exon 4 of 4) protein_coding-exon (ENSMUSG00000068959.6, exon 4 of 4) 8740 ENSMUSG00000104150.2 ENSMUSG00000104150 ENSMUST00000191753 Gm44573 TEC Interval_43069 chr13 23585020 23586970 + 0 NA intron (ENSMUSG00000047246.7, intron 1 of 1) protein_coding-intron (ENSMUSG00000047246.7, intron 1 of 1) 4397 ENSMUSG00000061482.7 ENSMUSG00000061482 ENSMUST00000102968 H4c4 protein_coding Interval_40271 chr12 102960549 102961680 + 0 NA intron (ENSMUSG00000021198.16, intron 1 of 51) protein_coding-intron (ENSMUSG00000021198.16, intron 1 of 48) -26715 ENSMUSG00000105998.1 ENSMUSG00000105998 ENSMUST00000198517 Gm44324 miRNA Interval_5049 chr1 84681768 84682393 + 0 NA intron (ENSMUSG00000036766.12, intron 1 of 4) protein_coding-intron (ENSMUSG00000036766.12, intron 1 of 12) -12637 ENSMUSG00000102481.1 ENSMUSG00000102481 ENSMUST00000195352 Gm37925 TEC Interval_157385 chr8 70023553 70024311 + 0 NA intron (ENSMUSG00000031858.16, intron 12 of 18) protein_coding-intron (ENSMUSG00000031858.16, intron 12 of 18) -12930 ENSMUSG00000110545.1 ENSMUSG00000110545 ENSMUST00000212486 Gm7730 processed_pseudogene Interval_64248 chr16 9767865 9768593 + 0 NA intron (ENSMUSG00000059003.12, intron 3 of 13) protein_coding-intron (ENSMUSG00000059003.12, intron 1 of 11) 226694 ENSMUSG00000059003.12 ENSMUSG00000059003 ENSMUST00000197242 Grin2a protein_coding Interval_21237 chr10 127366240 127367963 + 0 NA intron (ENSMUSG00000025405.9, intron 1 of 1) protein_coding-intron (ENSMUSG00000025405.9, intron 1 of 1) 3330 ENSMUSG00000025405.9 ENSMUSG00000025405 ENSMUST00000026472 Inhbc protein_coding Interval_36950 chr12 55552249 55552522 + 0 NA Intergenic Intergenic -12854 ENSMUSG00000063129.1 ENSMUSG00000063129 ENSMUST00000080123 Aldoart2 protein_coding Interval_36394 chr12 43223944 43224644 + 0 NA Intergenic Intergenic -81849 ENSMUSG00000112904.1 ENSMUSG00000112904 ENSMUST00000217732 Gm47030 lincRNA Interval_46108 chr13 61793420 61795091 + 0 NA Intergenic Intergenic -5648 ENSMUSG00000095905.2 ENSMUSG00000095905 ENSMUST00000178835 Selenok-ps4 processed_pseudogene Interval_124217 chr5 41555986 41557463 + 0 NA Intergenic Intergenic -134680 ENSMUSG00000107135.1 ENSMUSG00000107135 ENSMUST00000201766 Gm43806 processed_pseudogene Interval_160841 chr8 113536101 113536478 + 0 NA Intergenic Intergenic -7618 ENSMUSG00000088258.1 ENSMUSG00000088258 ENSMUST00000157633 Gm24291 snRNA Interval_154471 chr8 18497555 18497852 + 0 NA Intergenic Intergenic 14942 ENSMUSG00000077675.1 ENSMUSG00000077675 ENSMUST00000104487 Gm24469 snoRNA Interval_41224 chr12 111936692 111939537 + 0 NA Intergenic Intergenic 6032 ENSMUSG00000113769.1 ENSMUSG00000113769 ENSMUST00000222845 5033406O09Rik lincRNA Interval_47000 chr13 74166463 74167707 + 0 NA TTS (ENSMUSG00000036123.8) protein_coding-TTS (ENSMUSG00000036123.8) 41177 ENSMUSG00000034152.6 ENSMUSG00000034152 ENSMUST00000220548 Exoc3 protein_coding Interval_118267 chr4 129934520 129935290 + 0 NA intron (ENSMUSG00000028784.14, intron 1 of 13) protein_coding-intron (ENSMUSG00000028784.14, intron 1 of 13) -12642 ENSMUSG00000028784.14 ENSMUSG00000028784 ENSMUST00000128007 Spocd1 protein_coding Interval_137020 chr6 66479976 66480431 + 0 NA Intergenic Intergenic -14504 ENSMUSG00000107479.1 ENSMUSG00000107479 ENSMUST00000203449 2610300M13Rik lincRNA Interval_148666 chr7 83973137 83973371 + 0 NA exon (ENSMUSG00000052353.13, exon 13 of 29) protein_coding-exon (ENSMUSG00000052353.13, exon 13 of 29) 78201 ENSMUSG00000038503.15 ENSMUSG00000038503 ENSMUST00000207373 Mesd protein_coding Interval_44813 chr13 48848263 48848495 + 0 NA intron (ENSMUSG00000038025.8, intron 1 of 21) protein_coding-intron (ENSMUSG00000038025.8, intron 1 of 21) -22733 ENSMUSG00000086889.1 ENSMUSG00000086889 ENSMUST00000123212 Phf2os1 antisense Interval_90177 chr2 28755608 28757140 + 0 NA intron (ENSMUSG00000026807.8, intron 2 of 2) protein_coding-intron (ENSMUSG00000026807.8, intron 10 of 12) 14124 ENSMUSG00000026807.8 ENSMUSG00000026807 ENSMUST00000137588 Ak8 protein_coding Interval_55101 chr14 78098571 78099113 + 0 NA Intergenic Intergenic -9861 ENSMUSG00000045655.9 ENSMUSG00000045655 ENSMUST00000173826 Fam216b protein_coding Interval_78169 chr18 9707039 9709287 + 0 NA intron (ENSMUSG00000036103.9, intron 1 of 9) protein_coding-intron (ENSMUSG00000036103.9, intron 1 of 10) 568 ENSMUSG00000036103.9 ENSMUSG00000036103 ENSMUST00000234026 Colec12 protein_coding Interval_129009 chr5 116654563 116656455 + 0 NA intron (ENSMUSG00000106909.1, intron 2 of 2) lincRNA-intron (ENSMUSG00000106909.1, intron 2 of 2) -21945 ENSMUSG00000107369.1 ENSMUSG00000107369 ENSMUST00000201478 Gstm2-ps1 processed_pseudogene Interval_121188 chr4 153898666 153899608 + 0 NA Intergenic Intergenic -8249 ENSMUSG00000085390.1 ENSMUSG00000085390 ENSMUST00000156438 Gm13115 lincRNA Interval_579 chr1 7776823 7777961 + 0 NA Intergenic Intergenic -46827 ENSMUSG00000103557.1 ENSMUSG00000103557 ENSMUST00000194872 Gm38216 processed_pseudogene Interval_96564 chr2 125765748 125767084 + 0 NA intron (ENSMUSG00000035093.16, intron 7 of 17) protein_coding-intron (ENSMUSG00000035093.16, intron 7 of 17) -6102 ENSMUSG00000035093.16 ENSMUSG00000035093 ENSMUST00000136450 Secisbp2l protein_coding Interval_91426 chr2 38710195 38712637 + 0 NA promoter-TSS (ENSMUSG00000026751.14) protein_coding-promoter-TSS (ENSMUSG00000026751.14) -228 ENSMUSG00000026751.14 ENSMUSG00000026751 ENSMUST00000149690 Nr5a1 protein_coding Interval_153007 chr7 140828267 140829188 + 0 NA intron (ENSMUSG00000110136.1, intron 4 of 4) protein_coding-intron (ENSMUSG00000110136.1, intron 4 of 4) -6545 ENSMUSG00000025481.12 ENSMUSG00000025481 ENSMUST00000210916 Urah protein_coding Interval_76000 chr17 74279554 74279753 + 0 NA intron (ENSMUSG00000058704.9, intron 1 of 8) protein_coding-intron (ENSMUSG00000058704.9, intron 1 of 8) 15210 ENSMUSG00000058704.9 ENSMUSG00000058704 ENSMUST00000232861 Memo1 protein_coding Interval_134840 chr6 32202123 32203231 + 0 NA intron (ENSMUSG00000029765.12, intron 14 of 31) protein_coding-intron (ENSMUSG00000029765.12, intron 14 of 31) 22522 ENSMUSG00000029765.12 ENSMUSG00000029765 ENSMUST00000200732 Plxna4 protein_coding Interval_62153 chr15 88287747 88288071 + 0 NA intron (ENSMUSG00000115880.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000115880.1, intron 1 of 2) -26965 ENSMUSG00000116331.1 ENSMUSG00000116331 ENSMUST00000230919 B230214G05Rik lincRNA Interval_161595 chr8 121455130 121455469 + 0 NA intron (ENSMUSG00000092329.1, intron 1 of 15) protein_coding-intron (ENSMUSG00000092329.1, intron 1 of 15) 20319 ENSMUSG00000097438.1 ENSMUSG00000097438 ENSMUST00000181666 Gm26784 lincRNA Interval_12662 chr10 4217885 4218197 + 0 NA Intergenic Intergenic -4927 ENSMUSG00000111266.1 ENSMUSG00000111266 ENSMUST00000213553 Gm30570 lincRNA Interval_81959 chr18 66425831 66426258 + 0 NA Intergenic Intergenic 7585 ENSMUSG00000118218.1 ENSMUSG00000118218 ENSMUST00000236049 Gm50154 processed_pseudogene Interval_31840 chr11 103266899 103268138 + 0 NA promoter-TSS (ENSMUSG00000020941.7) protein_coding-promoter-TSS (ENSMUSG00000020941.7) 227 ENSMUSG00000078635.3 ENSMUSG00000078635 ENSMUST00000139621 1700028N14Rik processed_transcript Interval_93945 chr2 79775459 79775919 + 0 NA intron (ENSMUSG00000034683.12, intron 4 of 4) protein_coding-intron (ENSMUSG00000034683.12, intron 2 of 2) -10902 ENSMUSG00000034683.12 ENSMUSG00000034683 ENSMUST00000144432 Ppp1r1c protein_coding Interval_43740 chr13 35884638 35884956 + 0 NA Intergenic Intergenic -20660 ENSMUSG00000114270.1 ENSMUSG00000114270 ENSMUST00000225277 Gm48746 lincRNA Interval_76935 chr17 85037980 85038945 + 0 NA intron (ENSMUSG00000024131.8, intron 4 of 9) protein_coding-intron (ENSMUSG00000024131.8, intron 4 of 9) 10086 ENSMUSG00000024131.8 ENSMUSG00000024131 ENSMUST00000024944 Slc3a1 protein_coding Interval_82119 chr18 67835528 67837652 + 0 NA intron (ENSMUSG00000024542.9, intron 18 of 45) protein_coding-intron (ENSMUSG00000024542.9, intron 18 of 45) -33737 ENSMUSG00000024542.9 ENSMUSG00000024542 ENSMUST00000225589 Cep192 protein_coding Interval_6683 chr1 118733466 118733993 + 0 NA Intergenic Intergenic 51908 ENSMUSG00000088363.1 ENSMUSG00000088363 ENSMUST00000157738 Gm23497 snRNA Interval_67687 chr16 55960319 55960708 + 0 NA Intergenic Intergenic -5830 ENSMUSG00000098371.1 ENSMUSG00000098371 ENSMUST00000122365 Gm28037 processed_transcript Interval_151698 chr7 126132381 126132638 + 0 NA intron (ENSMUSG00000000131.15, intron 2 of 4) protein_coding-intron (ENSMUSG00000000131.15, intron 9 of 23) -33136 ENSMUSG00000090559.1 ENSMUSG00000090559 ENSMUST00000165729 Gm17137 transcribed_processed_pseudogene Interval_133630 chr6 7797000 7797214 + 0 NA Intergenic Intergenic 30713 ENSMUSG00000107394.1 ENSMUSG00000107394 ENSMUST00000203458 1700012J15Rik lincRNA Interval_154016 chr8 11896159 11896386 + 0 NA Intergenic Intergenic 22113 ENSMUSG00000109772.1 ENSMUSG00000109772 ENSMUST00000210446 Gm39132 lincRNA Interval_157824 chr8 74484567 74485235 + 0 NA Intergenic Intergenic 214654 ENSMUSG00000098378.1 ENSMUSG00000098378 ENSMUST00000183704 Gm27864 miRNA Interval_99802 chr2 164991210 164992067 + 0 NA intron (ENSMUSG00000017740.17, intron 17 of 25) protein_coding-intron (ENSMUSG00000017740.17, intron 17 of 25) 23397 ENSMUSG00000017740.17 ENSMUSG00000017740 ENSMUST00000137302 Slc12a5 protein_coding Interval_107139 chr3 103839366 103841177 + 0 NA intron (ENSMUSG00000044165.12, intron 3 of 3) protein_coding-intron (ENSMUSG00000044165.12, intron 3 of 3) -6553 ENSMUSG00000044165.12 ENSMUSG00000044165 ENSMUST00000196184 Bcl2l15 protein_coding Interval_85436 chr19 26181528 26182285 + 0 NA Intergenic Intergenic 68024 ENSMUSG00000117950.1 ENSMUSG00000117950 ENSMUST00000237746 Gm50376 lincRNA Interval_159727 chr8 99542542 99543045 + 0 NA intron (ENSMUSG00000052479.5, intron 1 of 4) lincRNA-intron (ENSMUSG00000052479.5, intron 1 of 4) -36023 ENSMUSG00000090116.1 ENSMUSG00000090116 ENSMUST00000161597 Gm15680 sense_overlapping Interval_33359 chr11 116109512 116110390 + 0 NA exon (ENSMUSG00000020773.11, exon 1 of 6) protein_coding-exon (ENSMUSG00000020773.11, exon 1 of 6) -2868 ENSMUSG00000020773.11 ENSMUSG00000020773 ENSMUST00000133039 Trim47 protein_coding Interval_118581 chr4 132618726 132619262 + 0 NA Intergenic Intergenic -20052 ENSMUSG00000028886.15 ENSMUSG00000028886 ENSMUST00000130833 Eya3 protein_coding Interval_86532 chr19 41492895 41493538 + 0 NA intron (ENSMUSG00000025019.17, intron 2 of 7) protein_coding-intron (ENSMUSG00000025019.17, intron 2 of 7) 33403 ENSMUSG00000044065.3 ENSMUSG00000044065 ENSMUST00000057038 Gm9788 processed_pseudogene Interval_3848 chr1 63614295 63614917 + 0 NA Intergenic Intergenic -1362 ENSMUSG00000115378.1 ENSMUSG00000115378 ENSMUST00000226288 Gm39653 protein_coding Interval_111718 chr4 26634221 26634665 + 0 NA Intergenic Intergenic -40276 ENSMUSG00000082138.1 ENSMUSG00000082138 ENSMUST00000117653 Gm11905 processed_pseudogene Interval_37464 chr12 69155048 69155502 + 0 NA Intergenic Intergenic -2898 ENSMUSG00000089071.1 ENSMUSG00000089071 ENSMUST00000158446 Gm24499 snRNA Interval_37871 chr12 72721771 72722284 + 0 NA Intergenic Intergenic 19555 ENSMUSG00000112989.1 ENSMUSG00000112989 ENSMUST00000221318 Gm48143 processed_pseudogene Interval_113666 chr4 57391136 57391533 + 0 NA Intergenic Intergenic -19380 ENSMUSG00000095042.1 ENSMUSG00000095042 ENSMUST00000119266 Gm12537 processed_pseudogene Interval_131253 chr5 136016061 136016938 + 0 NA intron (ENSMUSG00000004947.15, intron 4 of 11) protein_coding-intron (ENSMUSG00000004947.15, intron 4 of 10) 21652 ENSMUSG00000004947.15 ENSMUSG00000004947 ENSMUST00000142041 Dtx2 protein_coding Interval_77623 chr17 93264254 93264794 + 0 NA Intergenic Intergenic -17710 ENSMUSG00000094473.1 ENSMUSG00000094473 ENSMUST00000178746 Gm25935 snRNA Interval_31172 chr11 98700009 98700479 + 0 NA Intergenic Intergenic -1019 ENSMUSG00000038067.2 ENSMUSG00000038067 ENSMUST00000038886 Csf3 protein_coding Interval_104446 chr3 65755726 65756193 + 0 NA intron (ENSMUSG00000074579.14, intron 6 of 12) protein_coding-intron (ENSMUSG00000074579.14, intron 6 of 6) 15658 ENSMUSG00000065330.1 ENSMUSG00000065330 ENSMUST00000083396 Gm25755 snRNA Interval_174176 chrX 137141805 137142816 + 0 NA Intergenic Intergenic -8505 ENSMUSG00000065095.1 ENSMUSG00000065095 ENSMUST00000083161 Gm23679 snoRNA Interval_91340 chr2 37911781 37911967 + 0 NA intron (ENSMUSG00000035392.17, intron 12 of 18) protein_coding-intron (ENSMUSG00000035392.17, intron 13 of 21) 107293 ENSMUSG00000107586.1 ENSMUSG00000107586 ENSMUST00000204461 Gm44283 TEC Interval_12993 chr10 8934267 8936057 + 0 NA intron (ENSMUSG00000111731.1, intron 2 of 3) lincRNA-intron (ENSMUSG00000111731.1, intron 2 of 3) -16787 ENSMUSG00000111674.1 ENSMUSG00000111674 ENSMUST00000213841 Gm48728 lincRNA Interval_102986 chr3 34034470 34034739 + 0 NA intron (ENSMUSG00000027680.15, intron 1 of 14) protein_coding-intron (ENSMUSG00000027680.15, intron 1 of 16) -12028 ENSMUSG00000027680.15 ENSMUSG00000027680 ENSMUST00000200425 Fxr1 protein_coding Interval_150145 chr7 107370163 107371696 + 0 NA exon (ENSMUSG00000062542.11, exon 1 of 7) protein_coding-exon (ENSMUSG00000062542.11, exon 1 of 7) 4857 ENSMUSG00000109078.1 ENSMUSG00000109078 ENSMUST00000208516 Gm19033 processed_pseudogene Interval_137597 chr6 74363389 74364691 + 0 NA Intergenic Intergenic 23090 ENSMUSG00000093964.1 ENSMUSG00000093964 ENSMUST00000177723 Gm26179 snoRNA Interval_67177 chr16 44153393 44153634 + 0 NA intron (ENSMUSG00000022698.17, intron 2 of 5) protein_coding-intron (ENSMUSG00000022698.17, intron 1 of 4) 13660 ENSMUSG00000022698.17 ENSMUSG00000022698 ENSMUST00000063542 Naa50 protein_coding Interval_149888 chr7 102257880 102258761 + 0 NA Intergenic Intergenic -2266 ENSMUSG00000073982.11 ENSMUSG00000073982 ENSMUST00000209968 Rhog protein_coding Interval_171893 chr9 122156623 122157214 + 0 NA intron (ENSMUSG00000038145.17, intron 5 of 8) protein_coding-intron (ENSMUSG00000038145.17, intron 3 of 6) 14469 ENSMUSG00000111434.1 ENSMUSG00000111434 ENSMUST00000213905 Gm47121 sense_intronic Interval_96660 chr2 126947572 126948200 + 0 NA Intergenic Intergenic -27541 ENSMUSG00000027366.12 ENSMUSG00000027366 ENSMUST00000125592 Sppl2a protein_coding Interval_71875 chr17 26662510 26663728 + 0 NA promoter-TSS (ENSMUSG00000015575.15) protein_coding-promoter-TSS (ENSMUSG00000015575.15) -13038 ENSMUSG00000015575.15 ENSMUSG00000015575 ENSMUST00000167352 Atp6v0e protein_coding Interval_137621 chr6 76138378 76138692 + 0 NA Intergenic Intergenic 16908 ENSMUSG00000107685.1 ENSMUSG00000107685 ENSMUST00000204107 Gm5995 processed_pseudogene Interval_68063 chr16 64813620 64813852 + 0 NA intron (ENSMUSG00000047141.5, intron 3 of 8) protein_coding-intron (ENSMUSG00000047141.5, intron 3 of 8) 37916 ENSMUSG00000047141.5 ENSMUSG00000047141 ENSMUST00000052588 Zfp654 protein_coding Interval_19960 chr10 111515185 111515855 + 0 NA Intergenic Intergenic 7824 ENSMUSG00000020205.8 ENSMUSG00000020205 ENSMUST00000186359 Phlda1 protein_coding Interval_87258 chr19 47228348 47229079 + 0 NA promoter-TSS (ENSMUSG00000006435.16) protein_coding-promoter-TSS (ENSMUSG00000006435.16) -6804 ENSMUSG00000117659.1 ENSMUSG00000117659 ENSMUST00000236562 Gm50339 antisense Interval_68881 chr16 87760914 87761332 + 0 NA TTS (ENSMUSG00000088684.1) snoRNA-TTS (ENSMUSG00000088684.1) 520 ENSMUSG00000088684.1 ENSMUSG00000088684 ENSMUST00000158059 Gm23994 snoRNA Interval_137254 chr6 70781415 70783653 + 0 NA exon (ENSMUSG00000053604.5, exon 2 of 2) protein_coding-exon (ENSMUSG00000053604.5, exon 2 of 2) 9469 ENSMUSG00000053604.5 ENSMUSG00000053604 ENSMUST00000129244 Rpia protein_coding Interval_101692 chr3 8973420 8973619 + 0 NA intron (ENSMUSG00000027506.15, intron 1 of 3) protein_coding-intron (ENSMUSG00000027506.15, intron 1 of 6) 30959 ENSMUSG00000027506.15 ENSMUSG00000027506 ENSMUST00000155450 Tpd52 protein_coding Interval_23863 chr11 27222031 27223494 + 0 NA Intergenic Intergenic 96216 ENSMUSG00000088438.1 ENSMUSG00000088438 ENSMUST00000157813 Gm25387 snoRNA Interval_66610 chr16 35623901 35624307 + 0 NA intron (ENSMUSG00000052133.16, intron 2 of 5) protein_coding-intron (ENSMUSG00000052133.16, intron 2 of 21) -34481 ENSMUSG00000052133.16 ENSMUSG00000052133 ENSMUST00000128966 Sema5b protein_coding Interval_59531 chr15 55089563 55091262 + 0 NA promoter-TSS (ENSMUSG00000022422.13) protein_coding-promoter-TSS (ENSMUSG00000022422.13) -2655 ENSMUSG00000022422.13 ENSMUSG00000022422 ENSMUST00000143523 Dscc1 protein_coding Interval_44457 chr13 44932320 44933161 + 0 NA intron (ENSMUSG00000057531.14, intron 6 of 9) protein_coding-intron (ENSMUSG00000057531.14, intron 7 of 9) 69312 ENSMUSG00000057531.14 ENSMUSG00000057531 ENSMUST00000223524 Dtnbp1 protein_coding Interval_75604 chr17 69247445 69248665 + 0 NA promoter-TSS (ENSMUSG00000024044.19) protein_coding-promoter-TSS (ENSMUSG00000024044.19) 29153 ENSMUSG00000100572.1 ENSMUSG00000100572 ENSMUST00000187090 2410021H03Rik antisense Interval_50140 chr14 8226662 8227220 + 0 NA intron (ENSMUSG00000021751.13, intron 14 of 14) protein_coding-intron (ENSMUSG00000021751.13, intron 14 of 14) 12439 ENSMUSG00000021752.13 ENSMUSG00000021752 ENSMUST00000170111 Kctd6 protein_coding Interval_133516 chr6 6110596 6111007 + 0 NA intron (ENSMUSG00000015112.15, intron 9 of 17) protein_coding-intron (ENSMUSG00000015112.15, intron 9 of 17) 63150 ENSMUSG00000015112.15 ENSMUSG00000015112 ENSMUST00000177698 Slc25a13 protein_coding Interval_52592 chr14 47753290 47753507 + 0 NA Intergenic Intergenic 4095 ENSMUSG00000115719.1 ENSMUSG00000115719 ENSMUST00000226197 4930538L07Rik lincRNA Interval_94770 chr2 94178285 94179240 + 0 NA exon (ENSMUSG00000075020.6, exon 1 of 3) lincRNA-exon (ENSMUSG00000075020.6, exon 1 of 3) 5368 ENSMUSG00000093033.1 ENSMUSG00000093033 ENSMUST00000175292 Gm23630 miRNA Interval_92325 chr2 58762266 58762621 + 0 NA intron (ENSMUSG00000026839.17, intron 2 of 7) protein_coding-intron (ENSMUSG00000026839.17, intron 2 of 7) 21804 ENSMUSG00000080985.1 ENSMUSG00000080985 ENSMUST00000120476 Gm13559 processed_pseudogene Interval_109471 chr3 142743776 142744796 + 0 NA TTS (ENSMUSG00000040213.13) protein_coding-TTS (ENSMUSG00000040213.13) 395 ENSMUSG00000086561.1 ENSMUSG00000086561 ENSMUST00000136052 Gm15540 antisense Interval_111358 chr4 19652722 19652950 + 0 NA intron (ENSMUSG00000041058.15, intron 8 of 24) protein_coding-intron (ENSMUSG00000041058.15, intron 6 of 22) 47385 ENSMUSG00000078772.2 ENSMUSG00000078772 ENSMUST00000108250 Gm12353 protein_coding Interval_124930 chr5 60988904 60990453 + 0 NA Intergenic Intergenic -44029 ENSMUSG00000105903.1 ENSMUSG00000105903 ENSMUST00000199566 1700014F14Rik lincRNA Interval_65144 chr16 20160131 20160614 + 0 NA intron (ENSMUSG00000041215.16, intron 4 of 27) protein_coding-intron (ENSMUSG00000041215.16, intron 5 of 29) 16640 ENSMUSG00000084838.3 ENSMUSG00000084838 ENSMUST00000117664 Gm10241 processed_pseudogene Interval_61857 chr15 84712656 84712893 + 0 NA Intergenic Intergenic -7278 ENSMUSG00000078954.9 ENSMUSG00000078954 ENSMUST00000169075 Arhgap8 protein_coding Interval_174824 chrX 168162982 168163723 + 0 NA intron (ENSMUSG00000049176.16, intron 3 of 19) protein_coding-intron (ENSMUSG00000049176.16, intron 3 of 19) -39062 ENSMUSG00000049176.16 ENSMUSG00000049176 ENSMUST00000239138 Frmpd4 protein_coding Interval_121129 chr4 153317083 153317281 + 0 NA Intergenic Intergenic 99006 ENSMUSG00000087454.1 ENSMUSG00000087454 ENSMUST00000126141 Gm13174 lincRNA Interval_153428 chr7 144690329 144690565 + 0 NA intron (ENSMUSG00000031075.19, intron 1 of 6) protein_coding-intron (ENSMUSG00000031075.19, intron 1 of 24) 48119 ENSMUSG00000031075.19 ENSMUSG00000031075 ENSMUST00000131731 Ano1 protein_coding Interval_21838 chr11 4668383 4668787 + 0 NA exon (ENSMUSG00000020412.16, exon 11 of 20) protein_coding-exon (ENSMUSG00000020412.16, exon 11 of 20) 30838 ENSMUSG00000020412.16 ENSMUSG00000020412 ENSMUST00000109930 Ascc2 protein_coding Interval_79589 chr18 33901934 33902142 + 0 NA intron (ENSMUSG00000024376.7, intron 3 of 23) protein_coding-intron (ENSMUSG00000024376.7, intron 3 of 23) 104928 ENSMUSG00000024376.7 ENSMUSG00000024376 ENSMUST00000237971 Epb41l4a protein_coding Interval_101874 chr3 10318160 10318337 + 0 NA intron (ENSMUSG00000027531.16, intron 6 of 7) protein_coding-intron (ENSMUSG00000027531.16, intron 7 of 8) -1596 ENSMUSG00000027531.16 ENSMUSG00000027531 ENSMUST00000128912 Impa1 protein_coding Interval_113120 chr4 48460776 48461198 + 0 NA intron (ENSMUSG00000028345.15, intron 6 of 15) protein_coding-intron (ENSMUSG00000028345.15, intron 5 of 14) 12435 ENSMUSG00000028345.15 ENSMUSG00000028345 ENSMUST00000132911 Tex10 protein_coding Interval_12055 chr1 189194355 189195119 + 0 NA Intergenic Intergenic 16276 ENSMUSG00000103669.1 ENSMUSG00000103669 ENSMUST00000194444 2900042K21Rik sense_overlapping Interval_116077 chr4 107452686 107453873 + 0 NA intron (ENSMUSG00000034762.9, intron 1 of 9) protein_coding-intron (ENSMUSG00000034762.9, intron 2 of 10) 18707 ENSMUSG00000092723.1 ENSMUSG00000092723 ENSMUST00000174982 Gm24804 miRNA Interval_170239 chr9 106394125 106395231 + 0 NA Intergenic Intergenic 20059 ENSMUSG00000053716.9 ENSMUSG00000053716 ENSMUST00000193878 Dusp7 protein_coding Interval_72730 chr17 31802298 31803298 + 0 NA Intergenic Intergenic 13272 ENSMUSG00000117355.1 ENSMUSG00000117355 ENSMUST00000234824 Gm49999 lincRNA Interval_103845 chr3 53587638 53588100 + 0 NA intron (ENSMUSG00000037016.11, intron 3 of 23) protein_coding-intron (ENSMUSG00000037016.11, intron 3 of 23) -64849 ENSMUSG00000037016.11 ENSMUSG00000037016 ENSMUST00000199323 Frem2 protein_coding Interval_49974 chr13 119183511 119185100 + 0 NA Intergenic Intergenic 85299 ENSMUSG00000105411.1 ENSMUSG00000105411 ENSMUST00000199467 Gm44488 miRNA Interval_159472 chr8 94922108 94923213 + 0 NA Intergenic Intergenic -1034 ENSMUSG00000061577.12 ENSMUSG00000061577 ENSMUST00000142991 Adgrg5 protein_coding Interval_37906 chr12 72973261 72973880 + 0 NA Intergenic Intergenic 22675 ENSMUSG00000102197.1 ENSMUSG00000102197 ENSMUST00000195404 Gm38170 TEC Interval_53574 chr14 59468005 59468222 + 0 NA intron (ENSMUSG00000021981.10, intron 3 of 10) protein_coding-intron (ENSMUSG00000021981.10, intron 3 of 10) 27132 ENSMUSG00000021981.10 ENSMUSG00000021981 ENSMUST00000224893 Cab39l protein_coding Interval_13337 chr10 15553973 15554281 + 0 NA Intergenic Intergenic -32723 ENSMUSG00000112395.1 ENSMUSG00000112395 ENSMUST00000219635 Gm7198 processed_pseudogene Interval_43804 chr13 36670795 36671000 + 0 NA intron (ENSMUSG00000021420.13, intron 6 of 7) protein_coding-intron (ENSMUSG00000021420.13, intron 6 of 7) 16492 ENSMUSG00000077282.1 ENSMUSG00000077282 ENSMUST00000104094 Gm26395 snoRNA Interval_83661 chr19 3548475 3548681 + 0 NA intron (ENSMUSG00000024908.15, intron 1 of 3) protein_coding-intron (ENSMUSG00000024908.15, intron 1 of 22) 21474 ENSMUSG00000114302.1 ENSMUSG00000114302 ENSMUST00000223977 Gm48683 antisense Interval_64531 chr16 13127246 13128471 + 0 NA TTS (ENSMUSG00000022545.13) protein_coding-TTS (ENSMUSG00000022545.13) -4533 ENSMUSG00000022545.13 ENSMUSG00000022545 ENSMUST00000156393 Ercc4 protein_coding Interval_87297 chr19 47442100 47442828 + 0 NA intron (ENSMUSG00000053617.12, intron 1 of 13) protein_coding-intron (ENSMUSG00000053617.12, intron 1 of 14) -32105 ENSMUSG00000053617.12 ENSMUSG00000053617 ENSMUST00000237828 Sh3pxd2a protein_coding Interval_165275 chr9 45972483 45972697 + 0 NA intron (ENSMUSG00000003131.7, intron 5 of 5) protein_coding-intron (ENSMUSG00000003131.7, intron 5 of 5) 12193 ENSMUSG00000003131.7 ENSMUSG00000003131 ENSMUST00000214996 Pafah1b2 protein_coding Interval_34609 chr12 7820178 7820725 + 0 NA intron (ENSMUSG00000112323.1, intron 1 of 3) lincRNA-intron (ENSMUSG00000112323.1, intron 1 of 3) 39240 ENSMUSG00000112323.1 ENSMUSG00000112323 ENSMUST00000218503 Gm32828 lincRNA Interval_27674 chr11 69408608 69411930 + 0 NA intron (ENSMUSG00000018476.7, intron 1 of 22) protein_coding-intron (ENSMUSG00000018476.7, intron 1 of 22) -6054 ENSMUSG00000018476.7 ENSMUSG00000018476 ENSMUST00000156562 Kdm6b protein_coding Interval_25332 chr11 46431115 46431547 + 0 NA Intergenic Intergenic -5630 ENSMUSG00000020397.15 ENSMUSG00000020397 ENSMUST00000133635 Med7 protein_coding Interval_10722 chr1 173479396 173479890 + 0 NA intron (ENSMUSG00000037849.8, intron 4 of 6) protein_coding-intron (ENSMUSG00000037849.8, intron 4 of 6) -5717 ENSMUSG00000037849.8 ENSMUSG00000037849 ENSMUST00000169797 Ifi206 protein_coding Interval_102972 chr3 33914134 33914836 + 0 NA Intergenic Intergenic -16901 ENSMUSG00000105475.1 ENSMUSG00000105475 ENSMUST00000197426 4930431L21Rik lincRNA Interval_85130 chr19 23074283 23076536 + 0 NA intron (ENSMUSG00000097930.2, intron 1 of 6) lincRNA-intron (ENSMUSG00000097930.2, intron 1 of 6) 515 ENSMUSG00000097930.2 ENSMUSG00000097930 ENSMUST00000181623 C330002G04Rik lincRNA Interval_49769 chr13 114830720 114831844 + 0 NA exon (ENSMUSG00000015536.14, exon 6 of 6) protein_coding-exon (ENSMUSG00000015536.14, exon 6 of 6) 12988 ENSMUSG00000015536.14 ENSMUSG00000015536 ENSMUST00000164871 Mocs2 protein_coding Interval_156575 chr8 52476959 52477877 + 0 NA Intergenic Intergenic 77296 ENSMUSG00000109919.1 ENSMUSG00000109919 ENSMUST00000210293 Gm45673 processed_pseudogene Interval_1702 chr1 31627139 31627657 + 0 NA Intergenic Intergenic 12249 ENSMUSG00000070960.4 ENSMUSG00000070960 ENSMUST00000095050 Gm19680 processed_pseudogene Interval_14907 chr10 40999491 40999921 + 0 NA Intergenic Intergenic -35489 ENSMUSG00000111098.1 ENSMUSG00000111098 ENSMUST00000214667 Gm48057 lincRNA Interval_103137 chr3 35821760 35822391 + 0 NA intron (ENSMUSG00000037400.17, intron 19 of 21) protein_coding-intron (ENSMUSG00000037400.17, intron 19 of 29) -16974 ENSMUSG00000037400.17 ENSMUSG00000037400 ENSMUST00000197764 Atp11b protein_coding Interval_41032 chr12 110706847 110707091 + 0 NA Intergenic Intergenic -4241 ENSMUSG00000021270.13 ENSMUSG00000021270 ENSMUST00000149189 Hsp90aa1 protein_coding Interval_22291 chr11 8569116 8570321 + 0 NA intron (ENSMUSG00000020422.14, intron 4 of 30) protein_coding-intron (ENSMUSG00000020422.14, intron 4 of 30) 94963 ENSMUSG00000020422.14 ENSMUSG00000020422 ENSMUST00000134823 Tns3 protein_coding Interval_126974 chr5 98804282 98804955 + 0 NA Intergenic Intergenic -49833 ENSMUSG00000029335.5 ENSMUSG00000029335 ENSMUST00000200388 Bmp3 protein_coding Interval_174468 chrX 152834904 152835194 + 0 NA Intergenic Intergenic -33571 ENSMUSG00000088383.1 ENSMUSG00000088383 ENSMUST00000157758 Gm24687 ribozyme Interval_150117 chr7 106873881 106874142 + 0 NA exon (ENSMUSG00000109058.3, exon 1 of 1) protein_coding-exon (ENSMUSG00000109058.3, exon 1 of 1) 2880 ENSMUSG00000109058.3 ENSMUSG00000109058 ENSMUST00000060879 Olfr705 protein_coding Interval_142312 chr6 140586494 140587311 + 0 NA TTS (ENSMUSG00000030231.11) protein_coding-TTS (ENSMUSG00000030231.11) 23334 ENSMUSG00000030231.11 ENSMUSG00000030231 ENSMUST00000204528 Plekha5 protein_coding Interval_154496 chr8 18672812 18673765 + 0 NA intron (ENSMUSG00000039842.15, intron 10 of 11) protein_coding-intron (ENSMUSG00000039842.15, intron 11 of 13) 4768 ENSMUSG00000087300.1 ENSMUSG00000087300 ENSMUST00000138744 Gm16725 antisense Interval_100169 chr2 167445054 167446588 + 0 NA exon (ENSMUSG00000039463.14, exon 6 of 6) protein_coding-intron (ENSMUSG00000039463.14, intron 4 of 6) -5234 ENSMUSG00000039463.14 ENSMUSG00000039463 ENSMUST00000148454 Slc9a8 protein_coding Interval_171652 chr9 119958929 119959413 + 0 NA intron (ENSMUSG00000032514.11, intron 19 of 19) protein_coding-intron (ENSMUSG00000032514.11, intron 19 of 28) -2447 ENSMUSG00000032514.11 ENSMUSG00000032514 ENSMUST00000161967 Ttc21a protein_coding Interval_97239 chr2 132514171 132516633 + 0 NA intron (ENSMUSG00000086379.7, intron 2 of 3) antisense-intron (ENSMUSG00000086379.7, intron 3 of 4) -14254 ENSMUSG00000086250.1 ENSMUSG00000086250 ENSMUST00000134264 Gm14095 lincRNA Interval_14025 chr10 25669651 25670674 + 0 NA intron (ENSMUSG00000101537.1, intron 3 of 3) antisense-intron (ENSMUSG00000101537.1, intron 3 of 3) 37781 ENSMUSG00000112803.1 ENSMUSG00000112803 ENSMUST00000217933 Gm36543 lincRNA Interval_18312 chr10 84825884 84826095 + 0 NA intron (ENSMUSG00000020037.15, intron 4 of 17) protein_coding-intron (ENSMUSG00000020037.15, intron 4 of 17) -14806 ENSMUSG00000089451.1 ENSMUSG00000089451 ENSMUST00000158826 Gm24226 snRNA Interval_57942 chr15 25667708 25668133 + 0 NA intron (ENSMUSG00000022272.17, intron 2 of 2) protein_coding-intron (ENSMUSG00000022272.17, intron 2 of 40) -13878 ENSMUSG00000089639.1 ENSMUSG00000089639 ENSMUST00000161524 Gm2862 processed_pseudogene Interval_152488 chr7 133421494 133422110 + 0 NA Intergenic Intergenic -88601 ENSMUSG00000109619.1 ENSMUSG00000109619 ENSMUST00000209700 Gm45672 lincRNA Interval_147756 chr7 73389051 73391911 + 0 NA promoter-TSS (ENSMUSG00000070509.15) protein_coding-promoter-TSS (ENSMUSG00000070509.15) -795 ENSMUSG00000070509.15 ENSMUSG00000070509 ENSMUST00000206253 Rgma protein_coding Interval_76565 chr17 81154763 81155113 + 0 NA Intergenic Intergenic -89856 ENSMUSG00000024246.9 ENSMUSG00000024246 ENSMUST00000234801 Thumpd2 protein_coding Interval_21605 chr10 130523459 130524331 + 0 NA Intergenic Intergenic 12066 ENSMUSG00000112195.1 ENSMUSG00000112195 ENSMUST00000218754 Gm35405 processed_pseudogene Interval_60697 chr15 76228986 76229739 + 0 NA exon (ENSMUSG00000022565.15, exon 1 of 32) protein_coding-exon (ENSMUSG00000022565.15, exon 1 of 32) 5111 ENSMUSG00000063268.12 ENSMUSG00000063268 ENSMUST00000170851 Parp10 protein_coding Interval_60625 chr15 75774295 75774965 + 0 NA intron (ENSMUSG00000075600.3, intron 9 of 11) protein_coding-intron (ENSMUSG00000075600.3, intron 9 of 11) 14771 ENSMUSG00000077416.1 ENSMUSG00000077416 ENSMUST00000104228 Gm23747 snoRNA Interval_68863 chr16 87674825 87675664 + 0 NA Intergenic Intergenic -23760 ENSMUSG00000025612.5 ENSMUSG00000025612 ENSMUST00000156958 Bach1 protein_coding Interval_142771 chr6 145515158 145515467 + 0 NA intron (ENSMUSG00000054966.13, intron 2 of 10) protein_coding-intron (ENSMUSG00000054966.13, intron 2 of 10) 51123 ENSMUSG00000088781.1 ENSMUSG00000088781 ENSMUST00000158156 Gm25373 snoRNA Interval_13291 chr10 14241663 14242236 + 0 NA intron (ENSMUSG00000112284.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000112284.1, intron 1 of 1) -7991 ENSMUSG00000112238.1 ENSMUSG00000112238 ENSMUST00000218029 Gm48844 lincRNA Interval_53216 chr14 55184279 55185471 + 0 NA Intergenic Intergenic 15166 ENSMUSG00000115077.1 ENSMUSG00000115077 ENSMUST00000228176 Gm46455 unprocessed_pseudogene Interval_79190 chr18 25544808 25546114 + 0 NA intron (ENSMUSG00000024268.16, intron 2 of 5) protein_coding-intron (ENSMUSG00000024268.16, intron 2 of 12) -44222 ENSMUSG00000024268.16 ENSMUSG00000024268 ENSMUST00000224143 Celf4 protein_coding Interval_68926 chr16 89010556 89010815 + 0 NA promoter-TSS (ENSMUSG00000095992.2) protein_coding-promoter-TSS (ENSMUSG00000095992.2) 74 ENSMUSG00000095992.2 ENSMUSG00000095992 ENSMUST00000178913 Krtap22-2 protein_coding Interval_121925 chr5 9755470 9756600 + 0 NA Intergenic Intergenic 2905 ENSMUSG00000089399.1 ENSMUSG00000089399 ENSMUST00000158774 Gm23312 snRNA Interval_120552 chr4 149324888 149326011 + 0 NA Intergenic Intergenic -9190 ENSMUSG00000085286.1 ENSMUSG00000085286 ENSMUST00000155845 Ube4bos3 antisense Interval_28171 chr11 73425141 73425565 + 0 NA exon (ENSMUSG00000055971.11, exon 2 of 2) protein_coding-exon (ENSMUSG00000055971.11, exon 2 of 2) 3124 ENSMUSG00000055971.11 ENSMUSG00000055971 ENSMUST00000069790 Olfr378 protein_coding Interval_61060 chr15 79003602 79003875 + 0 NA exon (ENSMUSG00000033088.19, exon 12 of 14) protein_coding-exon (ENSMUSG00000033088.19, exon 12 of 14) 1515 ENSMUSG00000099180.1 ENSMUSG00000099180 ENSMUST00000183598 Mir6956 miRNA Interval_115066 chr4 89152946 89153298 + 0 NA intron (ENSMUSG00000062937.7, intron 3 of 7) protein_coding-intron (ENSMUSG00000062937.7, intron 3 of 7) 9069 ENSMUSG00000083989.2 ENSMUSG00000083989 ENSMUST00000120724 Gm12607 processed_pseudogene Interval_172020 chr9 123577790 123578007 + 0 NA intron (ENSMUSG00000025240.10, intron 12 of 19) protein_coding-intron (ENSMUSG00000025240.10, intron 12 of 19) 48139 ENSMUSG00000025240.10 ENSMUSG00000025240 ENSMUST00000215004 Sacm1l protein_coding Interval_145246 chr7 30882470 30883659 + 0 NA Intergenic Intergenic -1967 ENSMUSG00000100029.1 ENSMUSG00000100029 ENSMUST00000189744 D7Ertd128e lincRNA Interval_105621 chr3 88169165 88170321 + 0 NA TTS (ENSMUSG00000001419.17) protein_coding-TTS (ENSMUSG00000001419.17) 1491 ENSMUSG00000001419.17 ENSMUSG00000001419 ENSMUST00000152861 Mef2d protein_coding Interval_42984 chr13 22096625 22096934 + 0 NA TTS (ENSMUSG00000069299.2) protein_coding-TTS (ENSMUSG00000069299.2) 4660 ENSMUSG00000081334.1 ENSMUSG00000081334 ENSMUST00000122016 Vmn1r-ps94 transcribed_unprocessed_pseudogene Interval_66320 chr16 33132690 33133501 + 0 NA Intergenic Intergenic 7153 ENSMUSG00000089109.1 ENSMUSG00000089109 ENSMUST00000158484 Gm23916 ribozyme Interval_31433 chr11 100626258 100627357 + 0 NA TTS (ENSMUSG00000017837.12) protein_coding-TTS (ENSMUSG00000017837.12) 3859 ENSMUSG00000017837.12 ENSMUSG00000017837 ENSMUST00000142993 Nkiras2 protein_coding Interval_92413 chr2 59611402 59613494 + 0 NA intron (ENSMUSG00000035168.16, intron 1 of 1) protein_coding-intron (ENSMUSG00000035168.16, intron 1 of 26) -47764 ENSMUSG00000081157.1 ENSMUSG00000081157 ENSMUST00000118837 Gm13552 processed_pseudogene Interval_28007 chr11 72145145 72145470 + 0 NA Intergenic Intergenic -9529 ENSMUSG00000040543.16 ENSMUSG00000040543 ENSMUST00000142471 Pitpnm3 protein_coding Interval_62488 chr15 93433891 93434243 + 0 NA intron (ENSMUSG00000036167.16, intron 1 of 2) protein_coding-intron (ENSMUSG00000036167.16, intron 4 of 9) 34859 ENSMUSG00000036167.16 ENSMUSG00000036167 ENSMUST00000229721 Pphln1 protein_coding Interval_170398 chr9 107666585 107667977 + 0 NA promoter-TSS (ENSMUSG00000010064.15) protein_coding-promoter-TSS (ENSMUSG00000010064.15) -1820 ENSMUSG00000010064.15 ENSMUSG00000010064 ENSMUST00000193495 Slc38a3 protein_coding Interval_77372 chr17 88297450 88297802 + 0 NA intron (ENSMUSG00000117497.1, intron 3 of 3) lincRNA-intron (ENSMUSG00000117497.1, intron 4 of 4) 7752 ENSMUSG00000117497.1 ENSMUSG00000117497 ENSMUST00000234925 1700116H05Rik lincRNA Interval_70304 chr17 8375374 8376473 + 0 NA intron (ENSMUSG00000058159.14, intron 2 of 9) processed_transcript-intron (ENSMUSG00000117569.1, intron 2 of 5) 8737 ENSMUSG00000116704.1 ENSMUSG00000116704 ENSMUST00000231828 Gm5491 processed_pseudogene Interval_135570 chr6 40566609 40566863 + 0 NA Intergenic Intergenic -2751 ENSMUSG00000045514.5 ENSMUSG00000045514 ENSMUST00000051540 Olfr460 protein_coding Interval_38471 chr12 79261163 79261717 + 0 NA exon (ENSMUSG00000066440.5, exon 1 of 12) protein_coding-exon (ENSMUSG00000066440.5, exon 1 of 12) -17029 ENSMUSG00000066440.5 ENSMUSG00000066440 ENSMUST00000219571 Zfyve26 protein_coding Interval_153404 chr7 144459688 144460408 + 0 NA intron (ENSMUSG00000031078.15, intron 1 of 3) protein_coding-intron (ENSMUSG00000031078.15, intron 5 of 16) 9945 ENSMUSG00000085228.1 ENSMUSG00000085228 ENSMUST00000145297 Gm14376 sense_intronic Interval_106314 chr3 95308758 95309174 + 0 NA intron (ENSMUSG00000093424.3, intron 1 of 1) antisense-intron (ENSMUSG00000093424.3, intron 1 of 1) -2162 ENSMUSG00000015702.13 ENSMUSG00000015702 ENSMUST00000123365 Anxa9 protein_coding Interval_30943 chr11 97333016 97333602 + 0 NA exon (ENSMUSG00000070337.4, exon 11 of 11) protein_coding-exon (ENSMUSG00000070337.4, exon 11 of 11) -10820 ENSMUSG00000081958.1 ENSMUSG00000081958 ENSMUST00000122313 Gm11594 processed_pseudogene Interval_161302 chr8 119619653 119621359 + 0 NA Intergenic Intergenic 7759 ENSMUSG00000024266.8 ENSMUSG00000024266 ENSMUST00000098361 Adad2 protein_coding Interval_148891 chr7 89866272 89866752 + 0 NA exon (ENSMUSG00000039391.11, exon 15 of 15) protein_coding-exon (ENSMUSG00000039391.11, exon 15 of 15) 37117 ENSMUSG00000039391.11 ENSMUSG00000039391 ENSMUST00000041195 Ccdc81 protein_coding Interval_24787 chr11 37872810 37873149 + 0 NA Intergenic Intergenic 164284 ENSMUSG00000093184.1 ENSMUSG00000093184 ENSMUST00000175443 Gm25693 miRNA Interval_58460 chr15 34830414 34830615 + 0 NA Intergenic Intergenic -4085 ENSMUSG00000115360.1 ENSMUSG00000115360 ENSMUST00000226322 Gm48932 TEC Interval_40160 chr12 102110147 102110397 + 0 NA Intergenic Intergenic -19147 ENSMUSG00000041771.14 ENSMUSG00000041771 ENSMUST00000235018 Slc24a4 protein_coding Interval_24562 chr11 34466785 34467367 + 0 NA intron (ENSMUSG00000020143.15, intron 25 of 26) protein_coding-intron (ENSMUSG00000020143.15, intron 25 of 51) 152318 ENSMUSG00000069911.11 ENSMUSG00000069911 ENSMUST00000093192 Insyn2b protein_coding Interval_72619 chr17 31102334 31102570 + 0 NA intron (ENSMUSG00000024030.7, intron 5 of 14) protein_coding-intron (ENSMUSG00000024030.7, intron 5 of 14) 27194 ENSMUSG00000024029.4 ENSMUSG00000024029 ENSMUST00000024827 Tff3 protein_coding Interval_115874 chr4 105423209 105425223 + 0 NA Intergenic Intergenic -49270 ENSMUSG00000081819.1 ENSMUSG00000081819 ENSMUST00000118507 Gm12722 processed_pseudogene Interval_136994 chr6 65778493 65779706 + 0 NA promoter-TSS (ENSMUSG00000029913.14) protein_coding-promoter-TSS (ENSMUSG00000029913.14) 5 ENSMUSG00000029913.14 ENSMUSG00000029913 ENSMUST00000205155 Prdm5 protein_coding Interval_83230 chr18 82892329 82892708 + 0 NA Intergenic Intergenic -9560 ENSMUSG00000117762.1 ENSMUSG00000117762 ENSMUST00000236957 Gm30889 lincRNA Interval_163287 chr9 20591504 20591708 + 0 NA intron (ENSMUSG00000058192.16, intron 6 of 6) protein_coding-intron (ENSMUSG00000058192.16, intron 4 of 4) 10074 ENSMUSG00000058192.16 ENSMUSG00000058192 ENSMUST00000060063 Zfp846 protein_coding Interval_54843 chr14 75777030 75778007 + 0 NA intron (ENSMUSG00000022003.7, intron 1 of 2) protein_coding-intron (ENSMUSG00000022003.7, intron 1 of 9) 9487 ENSMUSG00000022003.7 ENSMUSG00000022003 ENSMUST00000228379 Slc25a30 protein_coding Interval_76039 chr17 74522515 74523013 + 0 NA intron (ENSMUSG00000117358.1, intron 2 of 3) processed_transcript-intron (ENSMUSG00000117358.1, intron 1 of 1) 4880 ENSMUSG00000117358.1 ENSMUSG00000117358 ENSMUST00000234285 Gm31645 processed_transcript Interval_165187 chr9 45107785 45108006 + 0 NA TTS (ENSMUSG00000048534.7) protein_coding-TTS (ENSMUSG00000048534.7) 4960 ENSMUSG00000111070.1 ENSMUSG00000111070 ENSMUST00000215148 Gm47596 TEC Interval_42666 chr13 17795704 17795957 + 0 NA intron (ENSMUSG00000041297.8, intron 1 of 13) protein_coding-intron (ENSMUSG00000041297.8, intron 1 of 13) 9267 ENSMUSG00000041297.8 ENSMUSG00000041297 ENSMUST00000221775 Cdk13 protein_coding Interval_108869 chr3 132858500 132861001 + 0 NA intron (ENSMUSG00000106230.1, intron 1 of 3) lincRNA-intron (ENSMUSG00000106230.1, intron 1 of 3) 17354 ENSMUSG00000106499.1 ENSMUSG00000106499 ENSMUST00000196299 Gm9403 processed_pseudogene Interval_97631 chr2 141265947 141267423 + 0 NA intron (ENSMUSG00000086450.1, intron 2 of 8) protein_coding-intron (ENSMUSG00000068205.14, intron 5 of 17) 20306 ENSMUSG00000086450.1 ENSMUSG00000086450 ENSMUST00000151538 Macrod2os1 antisense Interval_136250 chr6 52270502 52271391 + 0 NA Intergenic Intergenic 4362 ENSMUSG00000098538.1 ENSMUSG00000098538 ENSMUST00000184459 Gm27866 misc_RNA Interval_3768 chr1 62966549 62967276 + 0 NA intron (ENSMUSG00000040865.15, intron 11 of 12) protein_coding-intron (ENSMUSG00000040865.15, intron 11 of 12) -58830 ENSMUSG00000104991.1 ENSMUSG00000104991 ENSMUST00000199516 Gm44468 miRNA Interval_45973 chr13 59714042 59714682 + 0 NA intron (ENSMUSG00000091311.3, intron 3 of 3) protein_coding-intron (ENSMUSG00000091311.3, intron 3 of 3) 2078 ENSMUSG00000091311.3 ENSMUSG00000091311 ENSMUST00000165133 Spata31d1b protein_coding Interval_168119 chr9 77239259 77240491 + 0 NA intron (ENSMUSG00000032355.16, intron 1 of 10) protein_coding-intron (ENSMUSG00000032355.16, intron 1 of 7) 55364 ENSMUSG00000098668.1 ENSMUSG00000098668 ENSMUST00000184263 Gm27210 processed_pseudogene Interval_28363 chr11 75382821 75384171 + 0 NA TTS (ENSMUSG00000018809.2) protein_coding-TTS (ENSMUSG00000018809.2) 34500 ENSMUSG00000000753.15 ENSMUSG00000000753 ENSMUST00000155009 Serpinf1 protein_coding Interval_171608 chr9 119511647 119512053 + 0 NA intron (ENSMUSG00000032511.17, intron 20 of 27) protein_coding-intron (ENSMUSG00000032511.17, intron 19 of 26) 51653 ENSMUSG00000032511.17 ENSMUSG00000032511 ENSMUST00000138934 Scn5a protein_coding Interval_171038 chr9 113898119 113898535 + 0 NA intron (ENSMUSG00000033392.16, intron 26 of 34) protein_coding-intron (ENSMUSG00000033392.16, intron 24 of 32) -33302 ENSMUSG00000009741.15 ENSMUSG00000009741 ENSMUST00000216293 Ubp1 protein_coding Interval_131444 chr5 137267439 137269181 + 0 NA Intergenic Intergenic -19973 ENSMUSG00000023328.14 ENSMUSG00000023328 ENSMUST00000137126 Ache protein_coding Interval_80732 chr18 46632687 46632933 + 0 NA intron (ENSMUSG00000117780.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000117780.1, intron 1 of 2) 2003 ENSMUSG00000117780.1 ENSMUSG00000117780 ENSMUST00000236340 Gm3734 lincRNA Interval_60545 chr15 74787813 74788374 + 0 NA intron (ENSMUSG00000091709.1, intron 1 of 2) antisense-intron (ENSMUSG00000091709.1, intron 1 of 2) 4028 ENSMUSG00000091709.1 ENSMUSG00000091709 ENSMUST00000163707 Gm17189 antisense Interval_27252 chr11 64968357 64968850 + 0 NA Intergenic Intergenic -10469 ENSMUSG00000020549.14 ENSMUSG00000020549 ENSMUST00000128693 Elac2 protein_coding Interval_67046 chr16 42149313 42149955 + 0 NA intron (ENSMUSG00000061080.11, intron 8 of 8) protein_coding-intron (ENSMUSG00000061080.11, intron 6 of 6) 35283 ENSMUSG00000116841.1 ENSMUSG00000116841 ENSMUST00000232237 Gm49737 processed_pseudogene Interval_136775 chr6 59486114 59486450 + 0 NA Intergenic Intergenic -59988 ENSMUSG00000045441.5 ENSMUSG00000045441 ENSMUST00000051065 Gprin3 protein_coding Interval_38588 chr12 80298849 80299693 + 0 NA Intergenic Intergenic 39828 ENSMUSG00000112336.1 ENSMUSG00000112336 ENSMUST00000218666 Gm47766 antisense Interval_75617 chr17 69365063 69365767 + 0 NA Intergenic Intergenic -18425 ENSMUSG00000049672.15 ENSMUSG00000049672 ENSMUST00000112676 Zbtb14 protein_coding Interval_136683 chr6 57691437 57692568 + 0 NA promoter-TSS (ENSMUSG00000043162.7) protein_coding-promoter-TSS (ENSMUSG00000043162.7) 76 ENSMUSG00000043162.7 ENSMUSG00000043162 ENSMUST00000053386 Pyurf protein_coding Interval_162720 chr9 7989838 7990158 + 0 NA intron (ENSMUSG00000053110.13, intron 1 of 7) protein_coding-intron (ENSMUSG00000053110.13, intron 2 of 8) 11705 ENSMUSG00000053110.13 ENSMUSG00000053110 ENSMUST00000174300 Yap1 protein_coding Interval_123248 chr5 30887305 30889474 + 0 NA promoter-TSS (ENSMUSG00000029165.17) protein_coding-promoter-TSS (ENSMUSG00000029165.17) -567 ENSMUSG00000029165.17 ENSMUSG00000029165 ENSMUST00000201014 Agbl5 protein_coding Interval_109849 chr3 148926296 148926611 + 0 NA intron (ENSMUSG00000028184.12, intron 2 of 19) protein_coding-intron (ENSMUSG00000028184.12, intron 2 of 2) -62699 ENSMUSG00000104786.1 ENSMUSG00000104786 ENSMUST00000196445 Gm43573 antisense Interval_42552 chr13 15267027 15267392 + 0 NA Intergenic Intergenic -108415 ENSMUSG00000113410.1 ENSMUSG00000113410 ENSMUST00000222267 Gm20043 lincRNA Interval_73127 chr17 34964603 34965983 + 0 NA Intergenic Intergenic -4619 ENSMUSG00000092609.1 ENSMUSG00000092609 ENSMUST00000173680 Gm20481 protein_coding Interval_74775 chr17 56478051 56478526 + 0 NA Intergenic Intergenic 34143 ENSMUSG00000044526.3 ENSMUSG00000044526 ENSMUST00000052211 Znrf4 protein_coding Interval_166866 chr9 63398647 63399834 + 0 NA promoter-TSS (ENSMUSG00000086539.8) processed_transcript-promoter-TSS (ENSMUSG00000086539.8) -413 ENSMUSG00000032403.8 ENSMUSG00000032403 ENSMUST00000185528 2300009A05Rik protein_coding Interval_14928 chr10 41222995 41224013 + 0 NA intron (ENSMUSG00000038417.4, intron 21 of 22) protein_coding-intron (ENSMUSG00000038417.4, intron 21 of 22) 7459 ENSMUSG00000093933.1 ENSMUSG00000093933 ENSMUST00000104332 Gm25526 snoRNA Interval_156028 chr8 42848807 42849069 + 0 NA Intergenic Intergenic 79504 ENSMUSG00000109987.1 ENSMUSG00000109987 ENSMUST00000210858 Gm18414 processed_pseudogene Interval_137456 chr6 72558353 72559042 + 0 NA TTS (ENSMUSG00000056737.14) protein_coding-TTS (ENSMUSG00000056737.14) 9239 ENSMUSG00000056737.14 ENSMUSG00000056737 ENSMUST00000127770 Capg protein_coding Interval_68181 chr16 67001850 67002079 + 0 NA intron (ENSMUSG00000064115.13, intron 1 of 9) protein_coding-intron (ENSMUSG00000064115.13, intron 1 of 9) -76380 ENSMUSG00000064115.13 ENSMUSG00000064115 ENSMUST00000141282 Cadm2 protein_coding Interval_145292 chr7 31168175 31168825 + 0 NA intron (ENSMUSG00000100985.1, intron 3 of 3) antisense-intron (ENSMUSG00000100985.1, intron 3 of 3) 6142 ENSMUSG00000100985.1 ENSMUSG00000100985 ENSMUST00000190947 Gm10640 antisense Interval_147137 chr7 63754838 63756370 + 0 NA intron (ENSMUSG00000033510.14, intron 10 of 10) protein_coding-intron (ENSMUSG00000033510.14, intron 13 of 13) -10270 ENSMUSG00000108421.1 ENSMUSG00000108421 ENSMUST00000206886 Gm44718 lincRNA Interval_94043 chr2 82068461 82069393 + 0 NA intron (ENSMUSG00000070866.4, intron 1 of 3) protein_coding-intron (ENSMUSG00000070866.4, intron 1 of 3) 54184 ENSMUSG00000082666.1 ENSMUSG00000082666 ENSMUST00000120739 Gm13677 processed_pseudogene Interval_14087 chr10 26752422 26753170 + 0 NA promoter-TSS (ENSMUSG00000039031.16) protein_coding-promoter-TSS (ENSMUSG00000039031.16) -10240 ENSMUSG00000112675.1 ENSMUSG00000112675 ENSMUST00000219999 Gm48892 processed_pseudogene Interval_21200 chr10 127180387 127180649 + 0 NA promoter-TSS (ENSMUSG00000040441.12) protein_coding-promoter-TSS (ENSMUSG00000040441.12) -5405 ENSMUSG00000040441.12 ENSMUSG00000040441 ENSMUST00000220327 Slc26a10 protein_coding Interval_71084 chr17 17814587 17815052 + 0 NA Intergenic Intergenic -12505 ENSMUSG00000080316.11 ENSMUSG00000080316 ENSMUST00000178888 Spaca6 protein_coding Interval_121894 chr5 9229637 9230175 + 0 NA Intergenic Intergenic 31482 ENSMUSG00000080875.4 ENSMUSG00000080875 ENSMUST00000118351 Gm7332 processed_pseudogene Interval_127956 chr5 109832354 109832588 + 0 NA Intergenic Intergenic 1674 ENSMUSG00000105044.1 ENSMUSG00000105044 ENSMUST00000197379 Gm10416 TEC Interval_40276 chr12 103059186 103059882 + 0 NA TTS (ENSMUSG00000021198.16) protein_coding-TTS (ENSMUSG00000021198.16) -31122 ENSMUSG00000113706.1 ENSMUSG00000113706 ENSMUST00000223546 Gm47201 processed_pseudogene Interval_142857 chr6 146478260 146478760 + 0 NA intron (ENSMUSG00000030287.15, intron 1 of 13) protein_coding-intron (ENSMUSG00000030287.15, intron 1 of 56) -14903 ENSMUSG00000082120.1 ENSMUSG00000082120 ENSMUST00000117133 Gm15720 processed_pseudogene Interval_110544 chr4 3797464 3799237 + 0 NA intron (ENSMUSG00000042228.14, intron 4 of 4) protein_coding-intron (ENSMUSG00000042228.14, intron 4 of 4) -1767 ENSMUSG00000077271.1 ENSMUSG00000077271 ENSMUST00000104083 Gm22781 snoRNA Interval_134963 chr6 34171446 34172041 + 0 NA intron (ENSMUSG00000018999.14, intron 1 of 8) protein_coding-intron (ENSMUSG00000018999.14, intron 1 of 9) -7489 ENSMUSG00000087613.1 ENSMUSG00000087613 ENSMUST00000145644 Gm13855 lincRNA Interval_70643 chr17 12752348 12753274 + 0 NA intron (ENSMUSG00000023830.14, intron 1 of 47) protein_coding-intron (ENSMUSG00000023830.14, intron 1 of 47) -17820 ENSMUSG00000089525.1 ENSMUSG00000089525 ENSMUST00000158900 Gm23833 misc_RNA Interval_78085 chr18 7838190 7839270 + 0 NA Intergenic Intergenic 3553 ENSMUSG00000064822.1 ENSMUSG00000064822 ENSMUST00000082888 Gm24292 snRNA Interval_40468 chr12 105049737 105051344 + 0 NA Intergenic Intergenic 17852 ENSMUSG00000021102.4 ENSMUSG00000021102 ENSMUST00000220494 Glrx5 protein_coding Interval_106892 chr3 101617621 101618465 + 0 NA Intergenic Intergenic -20913 ENSMUSG00000104693.1 ENSMUSG00000104693 ENSMUST00000200347 Gm42941 sense_intronic Interval_96633 chr2 126666284 126667024 + 0 NA intron (ENSMUSG00000027361.15, intron 1 of 8) protein_coding-intron (ENSMUSG00000027361.15, intron 1 of 8) -3364 ENSMUSG00000027361.15 ENSMUSG00000027361 ENSMUST00000137335 Gabpb1 protein_coding Interval_51025 chr14 21651482 21652296 + 0 NA intron (ENSMUSG00000021767.19, intron 11 of 15) protein_coding-intron (ENSMUSG00000021767.19, intron 12 of 16) 51213 ENSMUSG00000063821.6 ENSMUSG00000063821 ENSMUST00000224735 Dupd1 protein_coding Interval_140013 chr6 113412809 113414176 + 0 NA intron (ENSMUSG00000030276.19, intron 8 of 8) protein_coding-intron (ENSMUSG00000030276.19, intron 12 of 12) 2960 ENSMUSG00000051169.14 ENSMUSG00000051169 ENSMUST00000150452 Rpusd3 protein_coding Interval_35177 chr12 17808365 17809475 + 0 NA Intergenic Intergenic -73277 ENSMUSG00000113294.1 ENSMUSG00000113294 ENSMUST00000223226 Gm49326 unprocessed_pseudogene Interval_158206 chr8 79784877 79785109 + 0 NA Intergenic Intergenic -11823 ENSMUSG00000110044.1 ENSMUSG00000110044 ENSMUST00000210550 Gm45434 processed_pseudogene Interval_18207 chr10 83697575 83698413 + 0 NA Intergenic Intergenic 38723 ENSMUSG00000112072.1 ENSMUSG00000112072 ENSMUST00000218849 Gm47244 processed_pseudogene Interval_98454 chr2 152495837 152496176 + 0 NA Intergenic Intergenic -5868 ENSMUSG00000027468.2 ENSMUSG00000027468 ENSMUST00000028966 Defb22 protein_coding Interval_11703 chr1 184791035 184791286 + 0 NA intron (ENSMUSG00000026621.13, intron 6 of 6) protein_coding-intron (ENSMUSG00000026621.13, intron 6 of 6) 17693 ENSMUSG00000026621.13 ENSMUSG00000026621 ENSMUST00000189492 Mtarc1 protein_coding Interval_95727 chr2 115341968 115342200 + 0 NA intron (ENSMUSG00000087309.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000087309.1, intron 1 of 2) 2196 ENSMUSG00000087309.1 ENSMUSG00000087309 ENSMUST00000152815 4930528P14Rik lincRNA Interval_161140 chr8 117733656 117733978 + 0 NA intron (ENSMUSG00000031844.8, intron 1 of 2) protein_coding-intron (ENSMUSG00000031844.8, intron 1 of 4) 12881 ENSMUSG00000031844.8 ENSMUSG00000031844 ENSMUST00000212998 Hsd17b2 protein_coding Interval_163376 chr9 21149504 21150318 + 0 NA promoter-TSS (ENSMUSG00000019471.10) protein_coding-promoter-TSS (ENSMUSG00000019471.10) -6717 ENSMUSG00000019471.10 ENSMUSG00000019471 ENSMUST00000215866 Cdc37 protein_coding Interval_59227 chr15 49150555 49151074 + 0 NA Intergenic Intergenic -19850 ENSMUSG00000114976.1 ENSMUSG00000114976 ENSMUST00000227927 Gm2333 processed_pseudogene Interval_102226 chr3 19627860 19629368 + 0 NA promoter-TSS (ENSMUSG00000082766.1) protein_coding-promoter-TSS (ENSMUSG00000082766.1) 63 ENSMUSG00000082766.1 ENSMUSG00000082766 ENSMUST00000119133 1700064H15Rik protein_coding Interval_92327 chr2 58792771 58793059 + 0 NA TTS (ENSMUSG00000026839.17) protein_coding-TTS (ENSMUSG00000026839.17) 52276 ENSMUSG00000080985.1 ENSMUSG00000080985 ENSMUST00000120476 Gm13559 processed_pseudogene Interval_156841 chr8 60982695 60984025 + 0 NA promoter-TSS (ENSMUSG00000004319.15) protein_coding-promoter-TSS (ENSMUSG00000004319.15) -77 ENSMUSG00000045746.3 ENSMUSG00000045746 ENSMUST00000052189 B230317F23Rik lincRNA Interval_2240 chr1 37290500 37290768 + 0 NA Intergenic Intergenic 9063 ENSMUSG00000102231.1 ENSMUSG00000102231 ENSMUST00000192404 1700074A21Rik TEC Interval_124219 chr5 41579460 41579648 + 0 NA Intergenic Intergenic 128603 ENSMUSG00000029128.12 ENSMUSG00000029128 ENSMUST00000201473 Rab28 protein_coding Interval_57820 chr15 21836301 21836582 + 0 NA Intergenic Intergenic 111058 ENSMUSG00000105214.1 ENSMUSG00000105214 ENSMUST00000196112 Gm44373 miRNA Interval_144877 chr7 28724629 28724827 + 0 NA exon (ENSMUSG00000030598.15, exon 2 of 2) protein_coding-exon (ENSMUSG00000030598.15, exon 2 of 2) -7772 ENSMUSG00000030598.15 ENSMUSG00000030598 ENSMUST00000167118 Fbxo17 protein_coding Interval_138712 chr6 91345980 91346327 + 0 NA Intergenic Intergenic 18944 ENSMUSG00000030093.7 ENSMUSG00000030093 ENSMUST00000132936 Wnt7a protein_coding Interval_26760 chr11 60287454 60287905 + 0 NA intron (ENSMUSG00000000538.18, intron 1 of 8) protein_coding-intron (ENSMUSG00000000538.18, intron 1 of 12) 15145 ENSMUSG00000098349.1 ENSMUSG00000098349 ENSMUST00000183802 Gm27711 miRNA Interval_148224 chr7 79970277 79970785 + 0 NA Intergenic Intergenic 21344 ENSMUSG00000077059.1 ENSMUSG00000077059 ENSMUST00000103871 Gm24541 miRNA Interval_126581 chr5 90382579 90383566 + 0 NA Intergenic Intergenic -14201 ENSMUSG00000106725.1 ENSMUSG00000106725 ENSMUST00000201590 Gm43363 TEC Interval_13547 chr10 19379436 19380438 + 0 NA Intergenic Intergenic 23404 ENSMUSG00000045591.6 ENSMUSG00000045591 ENSMUST00000053225 Olig3 protein_coding Interval_113571 chr4 56764412 56764622 + 0 NA intron (ENSMUSG00000028431.11, intron 29 of 36) protein_coding-intron (ENSMUSG00000028431.11, intron 29 of 36) -2476 ENSMUSG00000080370.1 ENSMUSG00000080370 ENSMUST00000116720 Gm22952 snoRNA Interval_34948 chr12 15001997 15002850 + 0 NA intron (ENSMUSG00000113644.1, intron 6 of 7) lincRNA-intron (ENSMUSG00000113644.1, intron 4 of 4) 18221 ENSMUSG00000099215.1 ENSMUSG00000099215 ENSMUST00000183930 Gm27682 miRNA Interval_63591 chr15 102230952 102232831 + 0 NA promoter-TSS (ENSMUSG00000001281.10) protein_coding-promoter-TSS (ENSMUSG00000001281.10) 17 ENSMUSG00000001281.10 ENSMUSG00000001281 ENSMUST00000127014 Itgb7 protein_coding Interval_67709 chr16 56131659 56132084 + 0 NA intron (ENSMUSG00000052917.15, intron 5 of 5) protein_coding-intron (ENSMUSG00000052917.15, intron 5 of 22) 17691 ENSMUSG00000116826.1 ENSMUSG00000116826 ENSMUST00000231653 Gm49682 processed_pseudogene Interval_108145 chr3 121877999 121878290 + 0 NA Intergenic Intergenic 15302 ENSMUSG00000104595.1 ENSMUSG00000104595 ENSMUST00000198469 Gm42593 processed_pseudogene Interval_154997 chr8 25567829 25568433 + 0 NA exon (ENSMUSG00000031565.18, exon 1 of 9) protein_coding-exon (ENSMUSG00000031565.18, exon 1 of 9) 1265 ENSMUSG00000031565.18 ENSMUSG00000031565 ENSMUST00000133936 Fgfr1 protein_coding Interval_117397 chr4 123460543 123461419 + 0 NA intron (ENSMUSG00000028649.21, intron 43 of 101) protein_coding-intron (ENSMUSG00000028649.21, intron 36 of 92) 25364 ENSMUSG00000081528.1 ENSMUSG00000081528 ENSMUST00000121747 Gm12924 processed_pseudogene Interval_86928 chr19 44959652 44960773 + 0 NA TTS (ENSMUSG00000118204.1) antisense-TTS (ENSMUSG00000118204.1) 15190 ENSMUSG00000065159.1 ENSMUSG00000065159 ENSMUST00000083225 Gm25482 snRNA Interval_170147 chr9 105545575 105545990 + 0 NA promoter-TSS (ENSMUSG00000101464.1) processed_pseudogene-promoter-TSS (ENSMUSG00000101464.1) 45 ENSMUSG00000101464.1 ENSMUSG00000101464 ENSMUST00000187229 Gm7436 processed_pseudogene Interval_3788 chr1 63091056 63092690 + 0 NA promoter-TSS (ENSMUSG00000040865.15) protein_coding-promoter-TSS (ENSMUSG00000040865.15) 18099 ENSMUSG00000081429.1 ENSMUSG00000081429 ENSMUST00000118179 Rps27-ps1 processed_pseudogene Interval_115243 chr4 94752222 94753311 + 0 NA intron (ENSMUSG00000006386.15, intron 1 of 22) protein_coding-intron (ENSMUSG00000006386.15, intron 1 of 22) -52077 ENSMUSG00000006386.15 ENSMUSG00000006386 ENSMUST00000131958 Tek protein_coding Interval_106002 chr3 90542493 90543131 + 0 NA TTS (ENSMUSG00000074457.10) protein_coding-TTS (ENSMUSG00000074457.10) 3524 ENSMUSG00000074457.10 ENSMUSG00000074457 ENSMUST00000098910 S100a16 protein_coding Interval_77446 chr17 88873944 88874132 + 0 NA Intergenic Intergenic -17416 ENSMUSG00000117566.1 ENSMUSG00000117566 ENSMUST00000234561 Gm9407 processed_pseudogene Interval_115577 chr4 100987303 100989151 + 0 NA exon (ENSMUSG00000028532.14, exon 20 of 27) protein_coding-exon (ENSMUSG00000028532.14, exon 20 of 27) -6483 ENSMUSG00000028532.14 ENSMUSG00000028532 ENSMUST00000136430 Cachd1 protein_coding Interval_53442 chr14 57536772 57537954 + 0 NA intron (ENSMUSG00000050222.11, intron 2 of 2) protein_coding-intron (ENSMUSG00000050222.11, intron 2 of 2) 12586 ENSMUSG00000050222.11 ENSMUSG00000050222 ENSMUST00000089494 Il17d protein_coding Interval_50053 chr13 120279524 120279808 + 0 NA Intergenic Intergenic 16552 ENSMUSG00000095071.2 ENSMUSG00000095071 ENSMUST00000179905 AF067061 protein_coding Interval_162621 chr9 6844677 6846609 + 0 NA Intergenic Intergenic 43800 ENSMUSG00000111464.1 ENSMUSG00000111464 ENSMUST00000213261 Gm48675 processed_pseudogene Interval_109543 chr3 144330016 144330377 + 0 NA Intergenic Intergenic 9982 ENSMUSG00000106266.1 ENSMUSG00000106266 ENSMUST00000198471 Gm43447 lincRNA Interval_119550 chr4 138325483 138326564 + 0 NA promoter-TSS (ENSMUSG00000098364.1) miRNA-promoter-TSS (ENSMUSG00000098364.1) 66 ENSMUSG00000098364.1 ENSMUSG00000098364 ENSMUST00000183989 Gm27646 miRNA Interval_128893 chr5 115926584 115927818 + 0 NA intron (ENSMUSG00000029516.19, intron 2 of 37) protein_coding-intron (ENSMUSG00000029516.19, intron 11 of 46) 24771 ENSMUSG00000107263.1 ENSMUSG00000107263 ENSMUST00000201457 Gm42471 TEC Interval_132681 chr5 147116916 147117527 + 0 NA Intergenic Intergenic -16168 ENSMUSG00000083988.1 ENSMUSG00000083988 ENSMUST00000120308 Rps10-ps4 processed_pseudogene Interval_85905 chr19 32883843 32884900 + 0 NA Intergenic Intergenic 73146 ENSMUSG00000013663.7 ENSMUSG00000013663 ENSMUST00000154806 Pten protein_coding Interval_155273 chr8 29976614 29977631 + 0 NA Intergenic Intergenic 104838 ENSMUSG00000109597.1 ENSMUSG00000109597 ENSMUST00000211611 Gm45492 processed_pseudogene Interval_64764 chr16 15556868 15557852 + 0 NA intron (ENSMUSG00000022674.15, intron 3 of 3) protein_coding-intron (ENSMUSG00000022674.15, intron 4 of 4) -30005 ENSMUSG00000116386.1 ENSMUSG00000116386 ENSMUST00000229197 Gm49538 processed_pseudogene Interval_60786 chr15 76751301 76751995 + 0 NA TTS (ENSMUSG00000033697.16) protein_coding-TTS (ENSMUSG00000033697.16) -27803 ENSMUSG00000116138.1 ENSMUSG00000116138 ENSMUST00000229507 C030006K11Rik protein_coding Interval_74552 chr17 53282065 53283856 + 0 NA Intergenic Intergenic 21447 ENSMUSG00000117089.1 ENSMUSG00000117089 ENSMUST00000233402 Gm49914 processed_pseudogene Interval_90071 chr2 27719567 27719875 + 0 NA intron (ENSMUSG00000015846.15, intron 1 of 9) protein_coding-intron (ENSMUSG00000015846.15, intron 1 of 9) -5498 ENSMUSG00000015846.15 ENSMUSG00000015846 ENSMUST00000148756 Rxra protein_coding Interval_150389 chr7 110085098 110085322 + 0 NA intron (ENSMUSG00000061079.14, intron 11 of 15) protein_coding-intron (ENSMUSG00000061079.14, intron 11 of 15) 23500 ENSMUSG00000061079.14 ENSMUSG00000061079 ENSMUST00000209252 Zfp143 protein_coding Interval_99060 chr2 156919477 156920080 + 0 NA Intergenic Intergenic -4395 ENSMUSG00000080880.1 ENSMUSG00000080880 ENSMUST00000117381 Gm14278 unprocessed_pseudogene Interval_71375 chr17 22799764 22800324 + 0 NA intron (ENSMUSG00000117333.1, intron 1 of 1) processed_pseudogene-intron (ENSMUSG00000117333.1, intron 1 of 1) 7692 ENSMUSG00000117333.1 ENSMUSG00000117333 ENSMUST00000233975 Gm16386 processed_pseudogene Interval_174787 chrX 166617734 166619697 + 0 NA exon (ENSMUSG00000087677.1, exon 2 of 2) lincRNA-exon (ENSMUSG00000087677.1, exon 2 of 2) 2827 ENSMUSG00000087677.1 ENSMUSG00000087677 ENSMUST00000156526 Gm15226 lincRNA Interval_133637 chr6 7908525 7909011 + 0 NA Intergenic Intergenic 29205 ENSMUSG00000084418.1 ENSMUSG00000084418 ENSMUST00000122469 Gm22276 snoRNA Interval_129004 chr5 116569702 116569918 + 0 NA intron (ENSMUSG00000063919.11, intron 1 of 12) protein_coding-intron (ENSMUSG00000063919.11, intron 1 of 12) 3685 ENSMUSG00000106914.1 ENSMUSG00000106914 ENSMUST00000201262 Gm42854 sense_intronic Interval_123107 chr5 29744134 29744360 + 0 NA intron (ENSMUSG00000029131.14, intron 1 of 1) protein_coding-intron (ENSMUSG00000029131.14, intron 1 of 9) 8258 ENSMUSG00000029131.14 ENSMUSG00000029131 ENSMUST00000139126 Dnajb6 protein_coding Interval_163973 chr9 30088470 30088754 + 0 NA Intergenic Intergenic -24893 ENSMUSG00000111175.1 ENSMUSG00000111175 ENSMUST00000214849 Gm19640 processed_pseudogene Interval_157177 chr8 66989591 66991032 + 0 NA Intergenic Intergenic 63822 ENSMUSG00000110583.1 ENSMUSG00000110583 ENSMUST00000212608 Gm7639 processed_pseudogene Interval_154952 chr8 25240319 25241237 + 0 NA promoter-TSS (ENSMUSG00000065954.11) protein_coding-promoter-TSS (ENSMUSG00000065954.11) -39329 ENSMUSG00000065954.11 ENSMUSG00000065954 ENSMUST00000211218 Tacc1 protein_coding Interval_80980 chr18 52204322 52205295 + 0 NA Intergenic Intergenic -50201 ENSMUSG00000096863.1 ENSMUSG00000096863 ENSMUST00000178926 Gm22259 snRNA Interval_79365 chr18 31247698 31248911 + 0 NA intron (ENSMUSG00000057455.12, intron 1 of 4) protein_coding-intron (ENSMUSG00000057455.12, intron 1 of 3) -35572 ENSMUSG00000057455.12 ENSMUSG00000057455 ENSMUST00000139924 Rit2 protein_coding Interval_141194 chr6 125503491 125505231 + 0 NA intron (ENSMUSG00000101162.2, intron 1 of 2) processed_transcript-intron (ENSMUSG00000101162.2, intron 1 of 2) 9933 ENSMUSG00000101162.2 ENSMUSG00000101162 ENSMUST00000185268 Gm26728 processed_transcript Interval_34543 chr12 4990073 4990299 + 0 NA intron (ENSMUSG00000052812.5, intron 20 of 30) protein_coding-intron (ENSMUSG00000052812.5, intron 20 of 30) 8134 ENSMUSG00000052812.5 ENSMUSG00000052812 ENSMUST00000220408 Atad2b protein_coding Interval_159219 chr8 91862479 91862758 + 0 NA Intergenic Intergenic -3253 ENSMUSG00000099664.1 ENSMUSG00000099664 ENSMUST00000191594 Gm28511 lincRNA Interval_8780 chr1 151024938 151025940 + 0 NA Intergenic Intergenic 24399 ENSMUSG00000099622.1 ENSMUSG00000099622 ENSMUST00000191173 Gm29188 lincRNA Interval_53077 chr14 54258915 54259784 + 0 NA promoter-TSS (ENSMUSG00000040997.14) protein_coding-promoter-TSS (ENSMUSG00000040997.14) 117 ENSMUSG00000040997.14 ENSMUSG00000040997 ENSMUST00000197807 Abhd4 protein_coding Interval_73982 chr17 45840212 45840566 + 0 NA Intergenic Intergenic -18066 ENSMUSG00000117139.1 ENSMUSG00000117139 ENSMUST00000233237 Gm35692 lincRNA Interval_105440 chr3 86416391 86416603 + 0 NA intron (ENSMUSG00000028080.16, intron 34 of 38) protein_coding-intron (ENSMUSG00000028080.16, intron 35 of 56) 32250 ENSMUSG00000064867.1 ENSMUSG00000064867 ENSMUST00000082933 Gm25039 snRNA Interval_115922 chr4 106306390 106306797 + 0 NA Intergenic Intergenic -9620 ENSMUSG00000028514.15 ENSMUSG00000028514 ENSMUST00000150521 Usp24 protein_coding Interval_118612 chr4 132776533 132777137 + 0 NA TTS (ENSMUSG00000028884.14) protein_coding-TTS (ENSMUSG00000028884.14) 1707 ENSMUSG00000028884.14 ENSMUSG00000028884 ENSMUST00000156968 Rpa2 protein_coding Interval_48505 chr13 99514230 99517092 + 0 NA promoter-TSS (ENSMUSG00000097027.2) bidirectional_promoter_lncRNA-promoter-TSS (ENSMUSG00000097027.2) -968 ENSMUSG00000097027.2 ENSMUSG00000097027 ENSMUST00000181939 Gm26559 bidirectional_promoter_lncRNA Interval_15013 chr10 41919394 41920614 + 0 NA intron (ENSMUSG00000071324.11, intron 16 of 16) protein_coding-intron (ENSMUSG00000071324.11, intron 17 of 17) 21631 ENSMUSG00000038332.13 ENSMUSG00000038332 ENSMUST00000214835 Sesn1 protein_coding Interval_37595 chr12 70147774 70149373 + 0 NA Intergenic Intergenic -5584 ENSMUSG00000090121.10 ENSMUSG00000090121 ENSMUST00000161541 Abhd12b protein_coding Interval_35465 chr12 22744721 22746295 + 0 NA promoter-TSS (ENSMUSG00000113574.1) processed_pseudogene-promoter-TSS (ENSMUSG00000113574.1) -97 ENSMUSG00000113574.1 ENSMUSG00000113574 ENSMUST00000223354 Gm48037 processed_pseudogene Interval_111590 chr4 24147169 24147363 + 0 NA Intergenic Intergenic -90834 ENSMUSG00000083154.1 ENSMUSG00000083154 ENSMUST00000117711 Gm11892 processed_pseudogene Interval_128545 chr5 113942426 113943732 + 0 NA exon (ENSMUSG00000042121.16, exon 14 of 14) protein_coding-exon (ENSMUSG00000042121.16, exon 14 of 14) -12945 ENSMUSG00000105664.1 ENSMUSG00000105664 ENSMUST00000197573 Gm42797 lincRNA Interval_168141 chr9 77481361 77482383 + 0 NA intron (ENSMUSG00000032352.16, intron 1 of 1) protein_coding-intron (ENSMUSG00000032352.16, intron 2 of 13) 62976 ENSMUSG00000032352.16 ENSMUSG00000032352 ENSMUST00000183980 Lrrc1 protein_coding Interval_78729 chr18 19582172 19582585 + 0 NA Intergenic Intergenic -27418 ENSMUSG00000117407.1 ENSMUSG00000117407 ENSMUST00000234168 Gm7720 transcribed_processed_pseudogene Interval_144897 chr7 28817903 28818656 + 0 NA exon (ENSMUSG00000015165.16, exon 1 of 2) protein_coding-exon (ENSMUSG00000015165.16, exon 1 of 2) 4934 ENSMUSG00000015165.16 ENSMUSG00000015165 ENSMUST00000174526 Hnrnpl protein_coding Interval_35070 chr12 17043408 17043630 + 0 NA Intergenic Intergenic -21894 ENSMUSG00000113447.1 ENSMUSG00000113447 ENSMUST00000221508 Gm48538 lincRNA Interval_311 chr1 3532304 3532473 + 0 NA exon (ENSMUSG00000103147.1, exon 1 of 1) processed_pseudogene-exon (ENSMUSG00000103147.1, exon 1 of 1) 593 ENSMUSG00000103147.1 ENSMUSG00000103147 ENSMUST00000192183 Gm7341 processed_pseudogene Interval_130596 chr5 129091813 129092312 + 0 NA Intergenic Intergenic -4695 ENSMUSG00000044017.16 ENSMUSG00000044017 ENSMUST00000156437 Adgrd1 protein_coding Interval_71429 chr17 23693698 23693893 + 0 NA Intergenic Intergenic 6318 ENSMUSG00000118572.1 ENSMUSG00000118572 ENSMUST00000239094 AC122821.1 processed_pseudogene Interval_139031 chr6 94334390 94334658 + 0 NA Intergenic Intergenic -10490 ENSMUSG00000107545.1 ENSMUSG00000107545 ENSMUST00000204466 Gm44307 processed_pseudogene Interval_106337 chr3 95450223 95451218 + 0 NA intron (ENSMUSG00000015522.18, intron 2 of 16) protein_coding-intron (ENSMUSG00000015522.18, intron 2 of 21) -10471 ENSMUSG00000105395.1 ENSMUSG00000105395 ENSMUST00000197821 Gm42672 processed_pseudogene Interval_68551 chr16 78588534 78589719 + 0 NA Intergenic Intergenic -12492 ENSMUSG00000022864.14 ENSMUSG00000022864 ENSMUST00000232329 D16Ertd472e protein_coding Interval_91794 chr2 49655355 49655571 + 0 NA intron (ENSMUSG00000026764.15, intron 1 of 25) protein_coding-intron (ENSMUSG00000026764.15, intron 1 of 25) -25036 ENSMUSG00000082879.1 ENSMUSG00000082879 ENSMUST00000120607 Gm13525 processed_pseudogene Interval_107971 chr3 117988611 117988812 + 0 NA Intergenic Intergenic 19581 ENSMUSG00000104703.1 ENSMUSG00000104703 ENSMUST00000197578 4921521D15Rik lincRNA Interval_83166 chr18 82486986 82487837 + 0 NA intron (ENSMUSG00000041607.17, intron 1 of 5) protein_coding-intron (ENSMUSG00000041607.17, intron 1 of 6) 36610 ENSMUSG00000061684.6 ENSMUSG00000061684 ENSMUST00000130005 Rpl21-ps8 processed_pseudogene Interval_29201 chr11 81504311 81505337 + 0 NA intron (ENSMUSG00000020704.13, intron 1 of 9) protein_coding-intron (ENSMUSG00000020704.13, intron 1 of 9) 68649 ENSMUSG00000080980.1 ENSMUSG00000080980 ENSMUST00000117522 1700071K01Rik processed_pseudogene Interval_120658 chr4 149944858 149945463 + 0 NA intron (ENSMUSG00000039911.13, intron 1 of 1) protein_coding-intron (ENSMUSG00000039911.13, intron 1 of 2) -22689 ENSMUSG00000039911.13 ENSMUSG00000039911 ENSMUST00000135896 Spsb1 protein_coding Interval_96360 chr2 121972577 121973280 + 0 NA intron (ENSMUSG00000033411.16, intron 2 of 12) protein_coding-intron (ENSMUSG00000033411.16, intron 2 of 12) 16448 ENSMUSG00000033411.16 ENSMUSG00000033411 ENSMUST00000127265 Ctdspl2 protein_coding Interval_132965 chr5 148991236 148991470 + 0 NA exon (ENSMUSG00000106951.1, exon 2 of 2) lincRNA-exon (ENSMUSG00000106951.1, exon 2 of 2) 3794 ENSMUSG00000106892.1 ENSMUSG00000106892 ENSMUST00000134031 Gm42791 protein_coding Interval_93973 chr2 80379617 80379899 + 0 NA Intergenic Intergenic -15139 ENSMUSG00000085921.1 ENSMUSG00000085921 ENSMUST00000138195 Gm13752 antisense Interval_14920 chr10 41101551 41101753 + 0 NA intron (ENSMUSG00000111576.1, intron 7 of 7) lincRNA-intron (ENSMUSG00000111576.1, intron 7 of 7) 26284 ENSMUSG00000111576.1 ENSMUSG00000111576 ENSMUST00000213704 Gm32284 lincRNA Interval_161882 chr8 123411108 123413178 + 0 NA intron (ENSMUSG00000062380.4, intron 1 of 3) protein_coding-intron (ENSMUSG00000062380.4, intron 1 of 3) 553 ENSMUSG00000062380.4 ENSMUSG00000062380 ENSMUST00000212743 Tubb3 protein_coding Interval_152560 chr7 134519739 134519982 + 0 NA Intergenic Intergenic -20876 ENSMUSG00000030994.16 ENSMUSG00000030994 ENSMUST00000205334 D7Ertd443e protein_coding Interval_87820 chr19 56273771 56274011 + 0 NA Intergenic Intergenic 3754 ENSMUSG00000077223.1 ENSMUSG00000077223 ENSMUST00000104035 Gm22271 snoRNA Interval_132246 chr5 143587680 143588129 + 0 NA Intergenic Intergenic -34597 ENSMUSG00000018001.18 ENSMUSG00000018001 ENSMUST00000110727 Cyth3 protein_coding Interval_16350 chr10 62401481 62402190 + 0 NA exon (ENSMUSG00000020080.8, exon 9 of 18) protein_coding-exon (ENSMUSG00000020080.8, exon 9 of 18) 20573 ENSMUSG00000020080.8 ENSMUSG00000020080 ENSMUST00000159579 Hkdc1 protein_coding Interval_130038 chr5 123842034 123842383 + 0 NA Intergenic Intergenic 23291 ENSMUSG00000045502.6 ENSMUSG00000045502 ENSMUST00000057145 Hcar2 protein_coding Interval_84925 chr19 18834724 18835272 + 0 NA intron (ENSMUSG00000024727.9, intron 24 of 38) protein_coding-intron (ENSMUSG00000024727.9, intron 24 of 38) -58037 ENSMUSG00000088601.1 ENSMUSG00000088601 ENSMUST00000157976 Gm24190 misc_RNA Interval_171015 chr9 113726292 113726928 + 0 NA Intergenic Intergenic -14902 ENSMUSG00000033392.16 ENSMUSG00000033392 ENSMUST00000163895 Clasp2 protein_coding Interval_150406 chr7 110188894 110190649 + 0 NA Intergenic Intergenic -31961 ENSMUSG00000031015.8 ENSMUSG00000031015 ENSMUST00000210513 Swap70 protein_coding Interval_46929 chr13 73500349 73500561 + 0 NA intron (ENSMUSG00000021608.15, intron 6 of 13) protein_coding-intron (ENSMUSG00000021608.15, intron 6 of 13) 28704 ENSMUSG00000021608.15 ENSMUSG00000021608 ENSMUST00000222881 Lpcat1 protein_coding Interval_146629 chr7 48880606 48882147 + 0 NA promoter-TSS (ENSMUSG00000046179.17) protein_coding-promoter-TSS (ENSMUSG00000046179.17) -5854 ENSMUSG00000085995.2 ENSMUSG00000085995 ENSMUST00000208790 Gm2788 processed_transcript Interval_138747 chr6 91602142 91602664 + 0 NA intron (ENSMUSG00000108308.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000108308.1, intron 1 of 1) 3171 ENSMUSG00000108308.1 ENSMUSG00000108308 ENSMUST00000205533 Gm45218 lincRNA Interval_20436 chr10 117614066 117614653 + 0 NA promoter-TSS (ENSMUSG00000112476.1) lincRNA-promoter-TSS (ENSMUSG00000112476.1) -46 ENSMUSG00000112476.1 ENSMUSG00000112476 ENSMUST00000217828 Gm32365 lincRNA Interval_69003 chr16 90052625 90053450 + 0 NA intron (ENSMUSG00000002489.16, intron 2 of 11) protein_coding-intron (ENSMUSG00000002489.16, intron 2 of 11) -36946 ENSMUSG00000116536.1 ENSMUSG00000116536 ENSMUST00000232386 Gm2805 processed_pseudogene Interval_26440 chr11 57868730 57870152 + 0 NA Intergenic Intergenic -11455 ENSMUSG00000084223.1 ENSMUSG00000084223 ENSMUST00000119500 Gm12244 processed_pseudogene Interval_127827 chr5 108060144 108060963 + 0 NA Intergenic Intergenic -4637 ENSMUSG00000096920.1 ENSMUSG00000096920 ENSMUST00000180714 Rps19-ps8 processed_pseudogene Interval_129502 chr5 120601102 120601784 + 0 NA TTS (ENSMUSG00000029600.10) protein_coding-TTS (ENSMUSG00000029600.10) 11146 ENSMUSG00000029600.10 ENSMUSG00000029600 ENSMUST00000140554 Rita1 protein_coding Interval_31168 chr11 98680378 98681071 + 0 NA Intergenic Intergenic -1867 ENSMUSG00000017221.14 ENSMUSG00000017221 ENSMUST00000142790 Psmd3 protein_coding Interval_30445 chr11 94404038 94405176 + 0 NA Intergenic Intergenic -11631 ENSMUSG00000020865.16 ENSMUSG00000020865 ENSMUST00000126566 Abcc3 protein_coding Interval_8063 chr1 135518897 135519439 + 0 NA intron (ENSMUSG00000009418.16, intron 6 of 30) protein_coding-intron (ENSMUSG00000009418.16, intron 3 of 29) 6170 ENSMUSG00000104524.1 ENSMUSG00000104524 ENSMUST00000192904 Gm37333 TEC Interval_29375 chr11 83507519 83507705 + 0 NA TTS (ENSMUSG00000020680.15) protein_coding-TTS (ENSMUSG00000020680.15) -13544 ENSMUSG00000065307.1 ENSMUSG00000065307 ENSMUST00000083373 Gm23247 snRNA Interval_166949 chr9 64100434 64101139 + 0 NA Intergenic Intergenic -16386 ENSMUSG00000032401.15 ENSMUSG00000032401 ENSMUST00000132018 Lctl protein_coding Interval_92718 chr2 63927773 63928122 + 0 NA Intergenic Intergenic 170063 ENSMUSG00000075324.13 ENSMUSG00000075324 ENSMUST00000153538 Fign protein_coding Interval_46243 chr13 62908552 62908783 + 0 NA Intergenic Intergenic -35909 ENSMUSG00000069805.10 ENSMUSG00000069805 ENSMUST00000134814 Fbp1 protein_coding Interval_163743 chr9 25167350 25167923 + 0 NA intron (ENSMUSG00000100002.2, intron 1 of 2) lincRNA-intron (ENSMUSG00000100002.2, intron 1 of 2) 15522 ENSMUSG00000100002.2 ENSMUSG00000100002 ENSMUST00000186170 Gm29642 lincRNA Interval_102695 chr3 30246638 30247243 + 0 NA intron (ENSMUSG00000027684.16, intron 2 of 8) protein_coding-intron (ENSMUSG00000027684.16, intron 1 of 11) -8980 ENSMUSG00000027684.16 ENSMUSG00000027684 ENSMUST00000061088 Mecom protein_coding Interval_45470 chr13 55313012 55313258 + 0 NA exon (ENSMUSG00000021488.8, exon 23 of 23) protein_coding-exon (ENSMUSG00000021488.8, exon 23 of 23) 8811 ENSMUSG00000034789.8 ENSMUSG00000034789 ENSMUST00000223672 Rab24 protein_coding Interval_85945 chr19 33773619 33775678 + 0 NA TTS (ENSMUSG00000079342.11) protein_coding-TTS (ENSMUSG00000079342.11) 12811 ENSMUSG00000079342.11 ENSMUSG00000079342 ENSMUST00000148137 Lipo1 protein_coding Interval_130948 chr5 134209602 134210360 + 0 NA intron (ENSMUSG00000015942.9, intron 2 of 6) protein_coding-intron (ENSMUSG00000015942.9, intron 11 of 15) 5512 ENSMUSG00000084729.1 ENSMUSG00000084729 ENSMUST00000122780 Gm24139 misc_RNA Interval_38782 chr12 82304666 82306589 + 0 NA intron (ENSMUSG00000042700.16, intron 3 of 23) protein_coding-intron (ENSMUSG00000042700.16, intron 2 of 22) 136151 ENSMUSG00000042700.16 ENSMUSG00000042700 ENSMUST00000221327 Sipa1l1 protein_coding Interval_152876 chr7 139412803 139413172 + 0 NA intron (ENSMUSG00000025477.14, intron 1 of 15) protein_coding-intron (ENSMUSG00000025477.14, intron 1 of 15) -103672 ENSMUSG00000025477.14 ENSMUSG00000025477 ENSMUST00000152475 Inpp5a protein_coding Interval_72610 chr17 31027005 31027285 + 0 NA Intergenic Intergenic -30582 ENSMUSG00000024030.7 ENSMUSG00000024030 ENSMUST00000236241 Abcg1 protein_coding Interval_61429 chr15 81554623 81555419 + 0 NA Intergenic Intergenic 30007 ENSMUSG00000103520.1 ENSMUSG00000103520 ENSMUST00000192082 1110025M09Rik TEC Interval_41802 chr12 119631830 119632243 + 0 NA Intergenic Intergenic 22118 ENSMUSG00000113091.1 ENSMUSG00000113091 ENSMUST00000223175 Gm9279 processed_pseudogene Interval_142422 chr6 141949216 141949548 + 0 NA Intergenic Intergenic -2566 ENSMUSG00000041698.11 ENSMUSG00000041698 ENSMUST00000171651 Slco1a1 protein_coding Interval_69545 chr16 94151997 94152897 + 0 NA intron (ENSMUSG00000040820.16, intron 2 of 6) protein_coding-intron (ENSMUSG00000040820.16, intron 5 of 9) 16964 ENSMUSG00000076304.1 ENSMUSG00000076304 ENSMUST00000102349 Gm23062 miRNA Interval_43588 chr13 33905070 33906119 + 0 NA promoter-TSS (ENSMUSG00000052180.15) protein_coding-promoter-TSS (ENSMUSG00000052180.15) 113 ENSMUSG00000052180.15 ENSMUSG00000052180 ENSMUST00000222216 Serpinb6c protein_coding Interval_3876 chr1 64121230 64122627 + 0 NA promoter-TSS (ENSMUSG00000025959.13) protein_coding-promoter-TSS (ENSMUSG00000025959.13) 354 ENSMUSG00000025959.13 ENSMUSG00000025959 ENSMUST00000135075 Klf7 protein_coding Interval_90136 chr2 28464096 28464393 + 0 NA intron (ENSMUSG00000026831.16, intron 2 of 2) protein_coding-intron (ENSMUSG00000026831.16, intron 2 of 2) 2072 ENSMUSG00000026831.16 ENSMUSG00000026831 ENSMUST00000127683 1700007K13Rik protein_coding Interval_106565 chr3 97281292 97281817 + 0 NA intron (ENSMUSG00000038256.15, intron 1 of 3) protein_coding-intron (ENSMUSG00000038256.15, intron 1 of 3) -6490 ENSMUSG00000104745.1 ENSMUSG00000104745 ENSMUST00000198200 Gm43073 TEC Interval_45871 chr13 58653958 58654732 + 0 NA Intergenic Intergenic 14494 ENSMUSG00000114380.1 ENSMUSG00000114380 ENSMUST00000225253 Gm47942 processed_pseudogene Interval_167064 chr9 64982619 64983346 + 0 NA intron (ENSMUSG00000034263.13, intron 11 of 12) protein_coding-intron (ENSMUSG00000034263.13, intron 11 of 12) -11189 ENSMUSG00000093119.1 ENSMUSG00000093119 ENSMUST00000175378 Gm25640 miRNA Interval_58458 chr15 34815887 34816088 + 0 NA Intergenic Intergenic 10442 ENSMUSG00000115360.1 ENSMUSG00000115360 ENSMUST00000226322 Gm48932 TEC Interval_71511 chr17 24231182 24232335 + 0 NA TTS (ENSMUSG00000072082.7) protein_coding-TTS (ENSMUSG00000072082.7) 2846 ENSMUSG00000093270.1 ENSMUSG00000093270 ENSMUST00000175529 Mir5134 miRNA Interval_125020 chr5 63924572 63925754 + 0 NA TTS (ENSMUSG00000087552.2) antisense-TTS (ENSMUSG00000087552.2) 1262 ENSMUSG00000087552.2 ENSMUSG00000087552 ENSMUST00000153089 Gm15819 antisense Interval_149664 chr7 100497509 100497728 + 0 NA promoter-TSS (ENSMUSG00000033685.13) protein_coding-promoter-TSS (ENSMUSG00000033685.13) 4264 ENSMUSG00000033685.13 ENSMUSG00000033685 ENSMUST00000149808 Ucp2 protein_coding Interval_26124 chr11 54562721 54563006 + 0 NA intron (ENSMUSG00000037533.20, intron 5 of 28) protein_coding-intron (ENSMUSG00000037533.20, intron 5 of 28) -63476 ENSMUSG00000037533.20 ENSMUSG00000037533 ENSMUST00000136494 Rapgef6 protein_coding Interval_40602 chr12 105962563 105963656 + 0 NA Intergenic Intergenic -62698 ENSMUSG00000021115.15 ENSMUSG00000021115 ENSMUST00000220629 Vrk1 protein_coding Interval_75705 chr17 70772113 70773116 + 0 NA intron (ENSMUSG00000117231.1, intron 4 of 4) protein_coding-intron (ENSMUSG00000003279.17, intron 11 of 14) -17032 ENSMUSG00000097282.1 ENSMUSG00000097282 ENSMUST00000181546 5031415H12Rik antisense Interval_153008 chr7 140834819 140836017 + 0 NA promoter-TSS (ENSMUSG00000025481.12) protein_coding-promoter-TSS (ENSMUSG00000025481.12) 146 ENSMUSG00000025481.12 ENSMUSG00000025481 ENSMUST00000210916 Urah protein_coding Interval_127540 chr5 104934074 104934743 + 0 NA TTS (ENSMUSG00000029299.14) protein_coding-TTS (ENSMUSG00000029299.14) -2243 ENSMUSG00000096561.1 ENSMUSG00000096561 ENSMUST00000178720 Gm24097 snRNA Interval_158182 chr8 79602612 79603665 + 0 NA Intergenic Intergenic -52390 ENSMUSG00000097975.1 ENSMUSG00000097975 ENSMUST00000182695 Gm8079 processed_pseudogene Interval_140975 chr6 123642668 123643067 + 0 NA intron (ENSMUSG00000095486.2, intron 2 of 2) protein_coding-intron (ENSMUSG00000095486.2, intron 2 of 5) 7858 ENSMUSG00000095486.2 ENSMUSG00000095486 ENSMUST00000232854 Vmn2r22 protein_coding Interval_77243 chr17 87544767 87544993 + 0 NA Intergenic Intergenic -14136 ENSMUSG00000117361.1 ENSMUSG00000117361 ENSMUST00000234692 Gm30984 lincRNA Interval_90082 chr2 27774342 27774662 + 0 NA Intergenic Intergenic 49283 ENSMUSG00000015846.15 ENSMUSG00000015846 ENSMUST00000148756 Rxra protein_coding Interval_163520 chr9 21833370 21834525 + 0 NA promoter-TSS (ENSMUSG00000032198.9) protein_coding-promoter-TSS (ENSMUSG00000032198.9) -1563 ENSMUSG00000047822.8 ENSMUSG00000047822 ENSMUST00000058777 Angptl8 protein_coding Interval_52145 chr14 37115644 37116100 + 0 NA Intergenic Intergenic -1850 ENSMUSG00000096001.2 ENSMUSG00000096001 ENSMUST00000179488 2610528A11Rik protein_coding Interval_149456 chr7 98717308 98717887 + 0 NA exon (ENSMUSG00000030753.15, exon 5 of 5) protein_coding-exon (ENSMUSG00000030753.15, exon 5 of 5) 11163 ENSMUSG00000109149.1 ENSMUSG00000109149 ENSMUST00000208543 Gm19656 lincRNA Interval_67335 chr16 46502429 46502714 + 0 NA Intergenic Intergenic -5799 ENSMUSG00000022656.15 ENSMUSG00000022656 ENSMUST00000133935 Nectin3 protein_coding Interval_35484 chr12 22979851 22980717 + 0 NA intron (ENSMUSG00000073164.11, intron 3 of 4) lincRNA-intron (ENSMUSG00000073164.11, intron 2 of 3) -18071 ENSMUSG00000113289.1 ENSMUSG00000113289 ENSMUST00000221861 Gm48044 processed_pseudogene Interval_115421 chr4 98805365 98806429 + 0 NA intron (ENSMUSG00000035407.8, intron 1 of 9) protein_coding-intron (ENSMUSG00000035407.8, intron 1 of 9) 12129 ENSMUSG00000085843.1 ENSMUSG00000085843 ENSMUST00000133455 Kank4os antisense Interval_12329 chr1 191788694 191789385 + 0 NA Intergenic Intergenic 2275 ENSMUSG00000102596.1 ENSMUSG00000102596 ENSMUST00000192352 Gm20203 processed_pseudogene Interval_153786 chr8 8580531 8581075 + 0 NA TTS (ENSMUSG00000108932.1) lincRNA-TTS (ENSMUSG00000108932.1) 4281 ENSMUSG00000108932.1 ENSMUSG00000108932 ENSMUST00000208799 Gm31463 lincRNA Interval_111318 chr4 18606645 18607806 + 0 NA intron (ENSMUSG00000087402.1, intron 3 of 10) processed_transcript-intron (ENSMUSG00000087402.1, intron 3 of 10) -101523 ENSMUSG00000089578.1 ENSMUSG00000089578 ENSMUST00000158953 Gm25971 misc_RNA Interval_90495 chr2 30800974 30801998 + 0 NA promoter-TSS (ENSMUSG00000044320.14) protein_coding-promoter-TSS (ENSMUSG00000044320.14) 2158 ENSMUSG00000044320.14 ENSMUSG00000044320 ENSMUST00000140168 1700001O22Rik protein_coding Interval_22763 chr11 14957094 14958274 + 0 NA Intergenic Intergenic -91474 ENSMUSG00000084183.1 ENSMUSG00000084183 ENSMUST00000121361 Gm12009 processed_pseudogene Interval_138484 chr6 88568743 88569386 + 0 NA intron (ENSMUSG00000033182.12, intron 4 of 4) protein_coding-intron (ENSMUSG00000033182.12, intron 5 of 5) 49458 ENSMUSG00000033182.12 ENSMUSG00000033182 ENSMUST00000184664 Kbtbd12 protein_coding Interval_94156 chr2 84737570 84738896 + 0 NA exon (ENSMUSG00000034059.14, exon 5 of 5) protein_coding-exon (ENSMUSG00000034059.14, exon 5 of 5) 2945 ENSMUSG00000065484.1 ENSMUSG00000065484 ENSMUST00000083550 Mir130a miRNA Interval_63098 chr15 99053236 99053774 + 0 NA Intergenic Intergenic -1669 ENSMUSG00000023484.14 ENSMUSG00000023484 ENSMUST00000229268 Prph protein_coding Interval_114378 chr4 74407358 74407553 + 0 NA Intergenic Intergenic 144646 ENSMUSG00000028397.13 ENSMUSG00000028397 ENSMUST00000150439 Kdm4c protein_coding Interval_24082 chr11 30073564 30074328 + 0 NA Intergenic Intergenic -32448 ENSMUSG00000101872.1 ENSMUSG00000101872 ENSMUST00000186216 Gm29237 antisense Interval_28302 chr11 75047329 75048114 + 0 NA intron (ENSMUSG00000038290.15, intron 3 of 4) protein_coding-intron (ENSMUSG00000038290.15, intron 12 of 18) -8373 ENSMUSG00000085765.1 ENSMUSG00000085765 ENSMUST00000155508 Gm12333 antisense Interval_129046 chr5 117081145 117081597 + 0 NA Intergenic Intergenic 22559 ENSMUSG00000107327.1 ENSMUSG00000107327 ENSMUST00000201054 Gm7478 processed_pseudogene Interval_160551 chr8 110606946 110608035 + 0 NA intron (ENSMUSG00000059854.8, intron 85 of 86) protein_coding-intron (ENSMUSG00000059854.8, intron 85 of 86) -38090 ENSMUSG00000010936.11 ENSMUSG00000010936 ENSMUST00000213015 Vac14 protein_coding Interval_84326 chr19 10137014 10138455 + 0 NA Intergenic Intergenic 38427 ENSMUSG00000117700.1 ENSMUSG00000117700 ENSMUST00000235345 Gm50359 processed_pseudogene Interval_122240 chr5 20583154 20583439 + 0 NA intron (ENSMUSG00000040003.18, intron 11 of 15) protein_coding-intron (ENSMUSG00000040003.18, intron 16 of 22) -5300 ENSMUSG00000106240.1 ENSMUSG00000106240 ENSMUST00000196129 Gm3544 processed_pseudogene Interval_166490 chr9 60024786 60026085 + 0 NA intron (ENSMUSG00000032289.15, intron 7 of 16) protein_coding-intron (ENSMUSG00000032289.15, intron 2 of 11) 16744 ENSMUSG00000088090.1 ENSMUSG00000088090 ENSMUST00000157465 Gm23668 rRNA Interval_172901 chrX 53024147 53024709 + 0 NA Intergenic Intergenic 23650 ENSMUSG00000076050.1 ENSMUSG00000076050 ENSMUST00000102095 Mir450b miRNA Interval_138989 chr6 94045155 94045404 + 0 NA intron (ENSMUSG00000045095.16, intron 1 of 24) protein_coding-intron (ENSMUSG00000045095.16, intron 1 of 21) -132775 ENSMUSG00000045095.16 ENSMUSG00000045095 ENSMUST00000203034 Magi1 protein_coding Interval_79218 chr18 25760452 25761342 + 0 NA Intergenic Intergenic 47127 ENSMUSG00000114511.1 ENSMUSG00000114511 ENSMUST00000224766 0710001A04Rik antisense Interval_89725 chr2 25018566 25018937 + 0 NA intron (ENSMUSG00000036833.16, intron 18 of 21) protein_coding-intron (ENSMUSG00000036833.16, intron 18 of 34) -12493 ENSMUSG00000065798.1 ENSMUSG00000065798 ENSMUST00000083864 Gm25518 snRNA Interval_170590 chr9 109094384 109097433 + 0 NA promoter-TSS (ENSMUSG00000053646.13) protein_coding-promoter-TSS (ENSMUSG00000053646.13) 1888 ENSMUSG00000025644.10 ENSMUSG00000025644 ENSMUST00000134690 Gm7628 antisense Interval_169639 chr9 99629177 99630520 + 0 NA promoter-TSS (ENSMUSG00000037784.14) protein_coding-promoter-TSS (ENSMUSG00000037784.14) 17346 ENSMUSG00000037953.7 ENSMUSG00000037953 ENSMUST00000042553 A4gnt protein_coding Interval_155070 chr8 26118539 26119977 + 0 NA promoter-TSS (ENSMUSG00000013878.18) protein_coding-promoter-TSS (ENSMUSG00000013878.18) -130 ENSMUSG00000013878.18 ENSMUSG00000013878 ENSMUST00000124867 Rnf170 protein_coding Interval_172313 chrX 12877030 12877998 + 0 NA Intergenic Intergenic -7152 ENSMUSG00000077858.1 ENSMUSG00000077858 ENSMUST00000104666 Gm25063 miRNA Interval_14225 chr10 29146372 29148368 + 0 NA promoter-TSS (ENSMUSG00000038916.7) protein_coding-promoter-TSS (ENSMUSG00000038916.7) -3176 ENSMUSG00000056316.2 ENSMUSG00000056316 ENSMUST00000070359 Gm9996 TEC Interval_15654 chr10 53115000 53115607 + 0 NA Intergenic Intergenic 12760 ENSMUSG00000112681.1 ENSMUSG00000112681 ENSMUST00000218783 Gm47622 sense_intronic Interval_161702 chr8 122168859 122169147 + 0 NA intron (ENSMUSG00000092329.1, intron 1 of 15) protein_coding-intron (ENSMUSG00000092329.1, intron 1 of 15) -89617 ENSMUSG00000043903.4 ENSMUSG00000043903 ENSMUST00000055537 Zfp469 protein_coding Interval_113552 chr4 56499920 56500451 + 0 NA Intergenic Intergenic 112383 ENSMUSG00000082613.1 ENSMUSG00000082613 ENSMUST00000122075 Gm12518 processed_pseudogene Interval_76403 chr17 79968863 79970139 + 0 NA Intergenic Intergenic 12161 ENSMUSG00000117415.1 ENSMUSG00000117415 ENSMUST00000234800 Gm41625 lincRNA Interval_145832 chr7 39761160 39761899 + 0 NA Intergenic Intergenic -21000 ENSMUSG00000101901.1 ENSMUSG00000101901 ENSMUST00000188228 Gm9230 processed_pseudogene Interval_21110 chr10 126549938 126550122 + 0 NA Intergenic Intergenic 36774 ENSMUSG00000112435.1 ENSMUSG00000112435 ENSMUST00000220216 Gm47965 processed_pseudogene Interval_8713 chr1 149758317 149758886 + 0 NA Intergenic Intergenic -23743 ENSMUSG00000084532.1 ENSMUSG00000084532 ENSMUST00000122583 n-R5s218 rRNA Interval_21962 chr11 5434027 5434980 + 0 NA intron (ENSMUSG00000041961.14, intron 1 of 3) protein_coding-intron (ENSMUSG00000041961.14, intron 1 of 8) -52763 ENSMUSG00000041961.14 ENSMUSG00000041961 ENSMUST00000143746 Znrf3 protein_coding Interval_56933 chr14 123609075 123609842 + 0 NA intron (ENSMUSG00000000197.8, intron 1 of 29) protein_coding-intron (ENSMUSG00000000197.8, intron 1 of 43) 17686 ENSMUSG00000000197.8 ENSMUSG00000000197 ENSMUST00000228766 Nalcn protein_coding Interval_144493 chr7 25450443 25450629 + 0 NA intron (ENSMUSG00000053714.8, intron 4 of 6) antisense-intron (ENSMUSG00000053714.8, intron 4 of 6) -7073 ENSMUSG00000081732.1 ENSMUSG00000081732 ENSMUST00000117570 Gm15495 processed_pseudogene Interval_25186 chr11 44953962 44954206 + 0 NA intron (ENSMUSG00000057098.14, intron 2 of 2) protein_coding-intron (ENSMUSG00000057098.14, intron 10 of 15) 162844 ENSMUSG00000084773.1 ENSMUSG00000084773 ENSMUST00000143869 Gm12159 lincRNA Interval_30382 chr11 94023824 94024263 + 0 NA intron (ENSMUSG00000020859.16, intron 2 of 4) protein_coding-intron (ENSMUSG00000020859.16, intron 2 of 28) 13585 ENSMUSG00000081604.5 ENSMUSG00000081604 ENSMUST00000118048 Gm11518 processed_pseudogene Interval_160214 chr8 107179665 107179985 + 0 NA intron (ENSMUSG00000031924.4, intron 4 of 4) protein_coding-intron (ENSMUSG00000031924.4, intron 4 of 4) 13910 ENSMUSG00000031924.4 ENSMUSG00000031924 ENSMUST00000212920 Cyb5b protein_coding Interval_121092 chr4 152886231 152887139 + 0 NA Intergenic Intergenic 126899 ENSMUSG00000080360.1 ENSMUSG00000080360 ENSMUST00000116710 Gm25779 miRNA Interval_1236 chr1 17875057 17875380 + 0 NA Intergenic Intergenic -69801 ENSMUSG00000099895.1 ENSMUSG00000099895 ENSMUST00000189853 Gm28153 antisense Interval_155561 chr8 34545232 34545547 + 0 NA Intergenic Intergenic 22071 ENSMUSG00000110015.1 ENSMUSG00000110015 ENSMUST00000211015 Gm33968 lincRNA Interval_104434 chr3 65613520 65614268 + 0 NA exon (ENSMUSG00000082280.4, exon 1 of 1) processed_pseudogene-exon (ENSMUSG00000082280.4, exon 1 of 1) 305 ENSMUSG00000082280.4 ENSMUSG00000082280 ENSMUST00000178959 Gm5847 processed_pseudogene Interval_11738 chr1 185030153 185030788 + 0 NA Intergenic Intergenic -30995 ENSMUSG00000026620.11 ENSMUSG00000026620 ENSMUST00000192657 Mark1 protein_coding Interval_15715 chr10 54509521 54511363 + 0 NA Intergenic Intergenic 161262 ENSMUSG00000112882.1 ENSMUSG00000112882 ENSMUST00000218122 Gm47970 processed_pseudogene Interval_40544 chr12 105617143 105618009 + 0 NA intron (ENSMUSG00000041341.10, intron 4 of 4) protein_coding-intron (ENSMUSG00000041341.10, intron 41 of 41) 5566 ENSMUSG00000041341.10 ENSMUSG00000041341 ENSMUST00000221568 Atg2b protein_coding Interval_50731 chr14 18669195 18669839 + 0 NA intron (ENSMUSG00000058317.12, intron 4 of 4) protein_coding-intron (ENSMUSG00000058317.12, intron 2 of 4) -124385 ENSMUSG00000114529.1 ENSMUSG00000114529 ENSMUST00000224515 Gm4939 processed_pseudogene Interval_116553 chr4 115544901 115545273 + 0 NA promoter-TSS (ENSMUSG00000081006.1) unprocessed_pseudogene-promoter-TSS (ENSMUSG00000081006.1) -23 ENSMUSG00000081006.1 ENSMUSG00000081006 ENSMUST00000118753 Cyp4b1-ps1 unprocessed_pseudogene Interval_101127 chr2 178196063 178196284 + 0 NA intron (ENSMUSG00000027525.18, intron 1 of 12) protein_coding-intron (ENSMUSG00000027525.18, intron 1 of 12) -117748 ENSMUSG00000078861.8 ENSMUSG00000078861 ENSMUST00000108923 Zfp931 protein_coding Interval_169280 chr9 96118722 96120046 + 0 NA promoter-TSS (ENSMUSG00000041440.18) protein_coding-promoter-TSS (ENSMUSG00000041440.18) -51532 ENSMUSG00000041440.18 ENSMUSG00000041440 ENSMUST00000189249 Gk5 protein_coding Interval_12417 chr1 193255725 193255938 + 0 NA intron (ENSMUSG00000016194.14, intron 1 of 6) protein_coding-intron (ENSMUSG00000016194.14, intron 1 of 6) 6006 ENSMUSG00000103089.1 ENSMUSG00000103089 ENSMUST00000192052 Gm38118 TEC Interval_66980 chr16 38982249 38982656 + 0 NA intron (ENSMUSG00000022790.14, intron 1 of 6) protein_coding-intron (ENSMUSG00000022790.14, intron 1 of 6) 55243 ENSMUSG00000089607.1 ENSMUSG00000089607 ENSMUST00000158982 Gm22500 snRNA Interval_148095 chr7 79194597 79195155 + 0 NA Intergenic Intergenic -46645 ENSMUSG00000030605.15 ENSMUSG00000030605 ENSMUST00000206844 Mfge8 protein_coding Interval_51621 chr14 30852049 30852602 + 0 NA intron (ENSMUSG00000006526.13, intron 1 of 2) protein_coding-intron (ENSMUSG00000006526.13, intron 1 of 7) 26731 ENSMUSG00000006526.13 ENSMUSG00000006526 ENSMUST00000226788 Stimate protein_coding Interval_61028 chr15 78848625 78848959 + 0 NA intron (ENSMUSG00000049521.2, intron 2 of 2) protein_coding-intron (ENSMUSG00000049521.2, intron 2 of 2) 6168 ENSMUSG00000049521.2 ENSMUSG00000049521 ENSMUST00000059619 Cdc42ep1 protein_coding Interval_108139 chr3 121814522 121816003 + 0 NA promoter-TSS (ENSMUSG00000028127.10) protein_coding-promoter-TSS (ENSMUSG00000028127.10) -65 ENSMUSG00000028127.10 ENSMUSG00000028127 ENSMUST00000199593 Abcd3 protein_coding Interval_34243 chr11 121557241 121558609 + 0 NA intron (ENSMUSG00000039230.14, intron 3 of 10) protein_coding-intron (ENSMUSG00000039230.14, intron 16 of 38) -38592 ENSMUSG00000039238.6 ENSMUSG00000039238 ENSMUST00000092298 Zfp750 protein_coding Interval_42338 chr13 12210202 12210878 + 0 NA intron (ENSMUSG00000021311.9, intron 22 of 32) protein_coding-intron (ENSMUSG00000021311.9, intron 22 of 32) -31259 ENSMUSG00000113789.1 ENSMUSG00000113789 ENSMUST00000221565 Gm47322 TEC Interval_22815 chr11 16294680 16295177 + 0 NA intron (ENSMUSG00000048834.16, intron 4 of 6) protein_coding-intron (ENSMUSG00000048834.16, intron 4 of 6) 36865 ENSMUSG00000048834.16 ENSMUSG00000048834 ENSMUST00000207256 Vstm2a protein_coding Interval_148032 chr7 78568807 78569418 + 0 NA intron (ENSMUSG00000108390.1, intron 1 of 1) protein_coding-intron (ENSMUSG00000059146.12, intron 1 of 16) 6120 ENSMUSG00000108390.1 ENSMUSG00000108390 ENSMUST00000206774 Gm39038 sense_intronic Interval_38583 chr12 80270667 80272055 + 0 NA Intergenic Intergenic 11918 ENSMUSG00000112336.1 ENSMUSG00000112336 ENSMUST00000218666 Gm47766 antisense Interval_146859 chr7 53568698 53569099 + 0 NA Intergenic Intergenic 322991 ENSMUSG00000099176.1 ENSMUSG00000099176 ENSMUST00000184140 Mir6238 miRNA Interval_64494 chr16 12638900 12639372 + 0 NA intron (ENSMUSG00000116520.1, intron 10 of 11) lincRNA-intron (ENSMUSG00000116520.1, intron 10 of 11) -65232 ENSMUSG00000116197.1 ENSMUSG00000116197 ENSMUST00000230690 Gm38619 lincRNA Interval_121645 chr5 4212598 4212791 + 0 NA Intergenic Intergenic 20327 ENSMUSG00000053178.5 ENSMUSG00000053178 ENSMUST00000177258 Mterf1b protein_coding Interval_84041 chr19 6909190 6910741 + 0 NA promoter-TSS (ENSMUSG00000024953.17) protein_coding-promoter-TSS (ENSMUSG00000024953.17) -199 ENSMUSG00000038812.16 ENSMUSG00000038812 ENSMUST00000174786 Trmt112 protein_coding Interval_135893 chr6 48504034 48504856 + 0 NA promoter-TSS (ENSMUSG00000107476.3) transcribed_unitary_pseudogene-promoter-TSS (ENSMUSG00000107476.3) -7993 ENSMUSG00000107476.3 ENSMUSG00000107476 ENSMUST00000205224 Zfp862-ps transcribed_unitary_pseudogene Interval_11350 chr1 181150655 181151690 + 0 NA intron (ENSMUSG00000062169.13, intron 1 of 4) protein_coding-intron (ENSMUSG00000062169.13, intron 1 of 3) 6479 ENSMUSG00000062169.13 ENSMUSG00000062169 ENSMUST00000111057 Cnih4 protein_coding Interval_90734 chr2 32182396 32183337 + 0 NA promoter-TSS (ENSMUSG00000039262.16) protein_coding-promoter-TSS (ENSMUSG00000039262.16) 9695 ENSMUSG00000099155.1 ENSMUSG00000099155 ENSMUST00000184513 Gm27805 miRNA Interval_52911 chr14 52010415 52010960 + 0 NA promoter-TSS (ENSMUSG00000049295.17) protein_coding-promoter-TSS (ENSMUSG00000049295.17) -112 ENSMUSG00000049295.17 ENSMUSG00000049295 ENSMUST00000227420 Zfp219 protein_coding Interval_15080 chr10 42425734 42426777 + 0 NA promoter-TSS (ENSMUSG00000038302.14) protein_coding-promoter-TSS (ENSMUSG00000038302.14) -9634 ENSMUSG00000083429.2 ENSMUSG00000083429 ENSMUST00000117283 Gm15198 processed_pseudogene Interval_170019 chr9 103700587 103701491 + 0 NA intron (ENSMUSG00000042757.16, intron 2 of 3) protein_coding-intron (ENSMUSG00000042757.16, intron 2 of 5) 60790 ENSMUSG00000042757.16 ENSMUSG00000042757 ENSMUST00000186455 Tmem108 protein_coding Interval_127284 chr5 102089727 102089950 + 0 NA Intergenic Intergenic 19620 ENSMUSG00000106492.1 ENSMUSG00000106492 ENSMUST00000196325 Gm29707 lincRNA Interval_109580 chr3 144605671 144606622 + 0 NA Intergenic Intergenic -19194 ENSMUSG00000064960.1 ENSMUSG00000064960 ENSMUST00000083026 Gm24406 snoRNA Interval_97993 chr2 146496791 146497932 + 0 NA intron (ENSMUSG00000037110.20, intron 1 of 41) protein_coding-intron (ENSMUSG00000037110.20, intron 1 of 15) 14983 ENSMUSG00000037110.20 ENSMUSG00000037110 ENSMUST00000124709 Ralgapa2 protein_coding Interval_6370 chr1 106427974 106428387 + 0 NA Intergenic Intergenic -11420 ENSMUSG00000099604.1 ENSMUSG00000099604 ENSMUST00000189471 Gm6651 processed_pseudogene Interval_29464 chr11 84150721 84152499 + 0 NA intron (ENSMUSG00000051452.8, intron 6 of 6) protein_coding-intron (ENSMUSG00000051452.8, intron 6 of 6) 15866 ENSMUSG00000051452.8 ENSMUSG00000051452 ENSMUST00000050771 Gm11437 protein_coding Interval_71416 chr17 23621456 23622090 + 0 NA promoter-TSS (ENSMUSG00000117059.1) processed_pseudogene-promoter-TSS (ENSMUSG00000117059.1) -873 ENSMUSG00000117059.1 ENSMUSG00000117059 ENSMUST00000233762 Gm7912 processed_pseudogene Interval_32361 chr11 107151604 107152438 + 0 NA Intergenic Intergenic -5387 ENSMUSG00000087596.1 ENSMUSG00000087596 ENSMUST00000129501 Gm11715 antisense Interval_105944 chr3 90219915 90221038 + 0 NA promoter-TSS (ENSMUSG00000027935.14) protein_coding-promoter-TSS (ENSMUSG00000027935.14) 6766 ENSMUSG00000027935.14 ENSMUSG00000027935 ENSMUST00000065418 Rab13 protein_coding Interval_92917 chr2 68531458 68531796 + 0 NA Intergenic Intergenic -22928 ENSMUSG00000075312.4 ENSMUSG00000075312 ENSMUST00000121239 Gm13597 processed_pseudogene Interval_55018 chr14 77008274 77008897 + 0 NA Intergenic Intergenic 27496 ENSMUSG00000044350.14 ENSMUSG00000044350 ENSMUST00000142300 Lacc1 protein_coding Interval_79169 chr18 25374878 25375444 + 0 NA intron (ENSMUSG00000033632.16, intron 9 of 11) protein_coding-intron (ENSMUSG00000033632.16, intron 7 of 9) -16640 ENSMUSG00000089908.1 ENSMUSG00000089908 ENSMUST00000163015 Gm16558 processed_pseudogene Interval_165281 chr9 46003628 46004379 + 0 NA intron (ENSMUSG00000003131.7, intron 1 of 3) protein_coding-intron (ENSMUSG00000003131.7, intron 1 of 3) -19220 ENSMUSG00000003131.7 ENSMUSG00000003131 ENSMUST00000214996 Pafah1b2 protein_coding Interval_7411 chr1 131121663 131122804 + 0 NA Intergenic Intergenic 16012 ENSMUSG00000016526.8 ENSMUSG00000016526 ENSMUST00000189756 Dyrk3 protein_coding Interval_43049 chr13 23488616 23489356 + 0 NA promoter-TSS (ENSMUSG00000053216.15) protein_coding-promoter-TSS (ENSMUSG00000053216.15) -156 ENSMUSG00000053216.15 ENSMUSG00000053216 ENSMUST00000110432 Btn2a2 protein_coding Interval_34034 chr11 120126702 120127557 + 0 NA intron (ENSMUSG00000061306.16, intron 10 of 10) protein_coding-intron (ENSMUSG00000061306.16, intron 10 of 15) -23433 ENSMUSG00000085636.1 ENSMUSG00000085636 ENSMUST00000140273 Gm11769 processed_transcript Interval_39168 chr12 85549833 85550941 + 0 NA Intergenic Intergenic 20789 ENSMUSG00000114163.1 ENSMUSG00000114163 ENSMUST00000220590 Gm32296 lincRNA Interval_165583 chr9 49878240 49878609 + 0 NA Intergenic Intergenic -52449 ENSMUSG00000094255.1 ENSMUSG00000094255 ENSMUST00000178565 Gm25633 snRNA Interval_125675 chr5 73193281 73193472 + 0 NA TTS (ENSMUSG00000070733.13) protein_coding-TTS (ENSMUSG00000070733.13) -2959 ENSMUSG00000107109.1 ENSMUSG00000107109 ENSMUST00000201197 Gm42571 TEC Interval_74929 chr17 57438989 57439490 + 0 NA intron (ENSMUSG00000004730.15, intron 12 of 21) protein_coding-intron (ENSMUSG00000004730.15, intron 12 of 22) 80540 ENSMUSG00000004730.15 ENSMUSG00000004730 ENSMUST00000004850 Adgre1 protein_coding Interval_95095 chr2 103822241 103822846 + 0 NA Intergenic Intergenic -3067 ENSMUSG00000081010.3 ENSMUSG00000081010 ENSMUST00000118421 Gm13880 processed_pseudogene Interval_34002 chr11 119930009 119930217 + 0 NA Intergenic Intergenic -8398 ENSMUSG00000086924.1 ENSMUSG00000086924 ENSMUST00000143428 Gm11766 lincRNA Interval_55264 chr14 79785120 79785632 + 0 NA Intergenic Intergenic -14064 ENSMUSG00000036422.10 ENSMUSG00000036422 ENSMUST00000194214 Pcdh8 protein_coding Interval_25012 chr11 43059425 43060027 + 0 NA Intergenic Intergenic 23980 ENSMUSG00000055456.1 ENSMUSG00000055456 ENSMUST00000069051 Gm9972 TEC Interval_173917 chrX 111658609 111658941 + 0 NA intron (ENSMUSG00000034551.12, intron 3 of 9) protein_coding-intron (ENSMUSG00000034551.12, intron 2 of 8) 38304 ENSMUSG00000034551.12 ENSMUSG00000034551 ENSMUST00000038472 Hdx protein_coding Interval_166957 chr9 64138950 64140367 + 0 NA TTS (ENSMUSG00000032400.18) protein_coding-TTS (ENSMUSG00000032400.18) 22486 ENSMUSG00000032401.15 ENSMUSG00000032401 ENSMUST00000132018 Lctl protein_coding Interval_2960 chr1 51644292 51644688 + 0 NA Intergenic Intergenic 53410 ENSMUSG00000101741.1 ENSMUSG00000101741 ENSMUST00000186769 Gm28055 lincRNA Interval_95672 chr2 113962572 113962895 + 0 NA Intergenic Intergenic -42171 ENSMUSG00000096006.1 ENSMUSG00000096006 ENSMUST00000178049 Gm21596 processed_pseudogene Interval_145294 chr7 31176942 31177817 + 0 NA Intergenic Intergenic -4658 ENSMUSG00000099536.1 ENSMUSG00000099536 ENSMUST00000187492 Gm9569 processed_pseudogene Interval_35227 chr12 18519729 18520052 + 0 NA intron (ENSMUSG00000073197.9, intron 1 of 3) protein_coding-intron (ENSMUSG00000073197.9, intron 1 of 3) 5380 ENSMUSG00000073197.9 ENSMUSG00000073197 ENSMUST00000063216 5730507C01Rik protein_coding Interval_85841 chr19 32275828 32276759 + 0 NA intron (ENSMUSG00000040451.18, intron 1 of 4) protein_coding-intron (ENSMUSG00000040451.18, intron 3 of 9) 671 ENSMUSG00000040451.18 ENSMUSG00000040451 ENSMUST00000141252 Sgms1 protein_coding Interval_34893 chr12 13048406 13048768 + 0 NA exon (ENSMUSG00000113928.1, exon 3 of 4) lincRNA-exon (ENSMUSG00000113928.1, exon 3 of 4) 6142 ENSMUSG00000113928.1 ENSMUSG00000113928 ENSMUST00000220969 Gm48209 lincRNA Interval_94469 chr2 91438610 91439911 + 0 NA intron (ENSMUSG00000040591.18, intron 1 of 3) protein_coding-intron (ENSMUSG00000040591.18, intron 1 of 8) 5383 ENSMUSG00000040591.18 ENSMUSG00000040591 ENSMUST00000141262 1110051M20Rik protein_coding Interval_86046 chr19 35984283 35984580 + 0 NA intron (ENSMUSG00000024798.15, intron 1 of 3) protein_coding-intron (ENSMUSG00000024798.15, intron 1 of 3) -59862 ENSMUSG00000094707.2 ENSMUSG00000094707 ENSMUST00000238067 A830019P07Rik lincRNA Interval_72497 chr17 30197211 30197539 + 0 NA promoter-TSS (ENSMUSG00000044477.12) protein_coding-promoter-TSS (ENSMUSG00000044477.12) 19900 ENSMUSG00000117974.1 ENSMUSG00000117974 ENSMUST00000236459 Tuba-rs1 transcribed_processed_pseudogene Interval_22068 chr11 6138301 6138751 + 0 NA intron (ENSMUSG00000053838.14, intron 2 of 2) protein_coding-intron (ENSMUSG00000053838.14, intron 3 of 5) 34510 ENSMUSG00000083022.1 ENSMUSG00000083022 ENSMUST00000117476 Rps15a-ps6 processed_pseudogene Interval_132583 chr5 146453078 146453977 + 0 NA intron (ENSMUSG00000029636.11, intron 5 of 9) protein_coding-intron (ENSMUSG00000029636.11, intron 5 of 9) -2082 ENSMUSG00000029636.11 ENSMUSG00000029636 ENSMUST00000238592 Wasf3 protein_coding Interval_98669 chr2 154138668 154138959 + 0 NA TTS (ENSMUSG00000027482.12) protein_coding-TTS (ENSMUSG00000027482.12) 3269 ENSMUSG00000027482.12 ENSMUSG00000027482 ENSMUST00000125753 Bpifa3 protein_coding Interval_125679 chr5 73206244 73206509 + 0 NA intron (ENSMUSG00000070733.13, intron 2 of 11) protein_coding-intron (ENSMUSG00000070733.13, intron 2 of 62) 6267 ENSMUSG00000090561.2 ENSMUSG00000090561 ENSMUST00000168686 Gm17207 sense_intronic Interval_55594 chr14 94565035 94565397 + 0 NA Intergenic Intergenic -56422 ENSMUSG00000115638.1 ENSMUSG00000115638 ENSMUST00000227114 Gm18074 processed_pseudogene Interval_165334 chr9 46363831 46364077 + 0 NA intron (ENSMUSG00000110864.1, intron 4 of 4) lincRNA-intron (ENSMUSG00000110864.1, intron 4 of 4) 21179 ENSMUSG00000110864.1 ENSMUSG00000110864 ENSMUST00000214913 Gm31374 lincRNA Interval_11229 chr1 180319737 180321030 + 0 NA Intergenic Intergenic 7801 ENSMUSG00000055676.4 ENSMUSG00000055676 ENSMUST00000192714 Gm5069 transcribed_processed_pseudogene Interval_139842 chr6 110785520 110786309 + 0 NA intron (ENSMUSG00000056755.13, intron 2 of 9) protein_coding-intron (ENSMUSG00000056755.13, intron 1 of 10) 47564 ENSMUSG00000092603.1 ENSMUSG00000092603 ENSMUST00000174010 Gm20386 processed_pseudogene Interval_12318 chr1 191659938 191662457 + 0 NA Intergenic Intergenic -56830 ENSMUSG00000026623.16 ENSMUSG00000026623 ENSMUST00000130876 Lpgat1 protein_coding Interval_36898 chr12 55049068 55049329 + 0 NA intron (ENSMUSG00000062198.5, intron 1 of 2) protein_coding-intron (ENSMUSG00000062198.5, intron 6 of 7) 17719 ENSMUSG00000113467.1 ENSMUSG00000113467 ENSMUST00000222661 Gm46350 processed_pseudogene Interval_23406 chr11 22286370 22287785 + 0 NA promoter-TSS (ENSMUSG00000042302.14) protein_coding-promoter-TSS (ENSMUSG00000042302.14) -282 ENSMUSG00000042302.14 ENSMUSG00000042302 ENSMUST00000137594 Ehbp1 protein_coding Interval_110900 chr4 9825010 9826908 + 0 NA Intergenic Intergenic -18413 ENSMUSG00000051279.2 ENSMUSG00000051279 ENSMUST00000057613 Gdf6 protein_coding Interval_147956 chr7 75868241 75868710 + 0 NA TTS (ENSMUSG00000055652.14) protein_coding-TTS (ENSMUSG00000055652.14) 20078 ENSMUSG00000055652.14 ENSMUSG00000055652 ENSMUST00000205887 Klhl25 protein_coding Interval_110870 chr4 9179419 9180704 + 0 NA Intergenic Intergenic -29942 ENSMUSG00000075958.1 ENSMUSG00000075958 ENSMUST00000082782 Gm23423 snRNA Interval_157179 chr8 67035234 67036898 + 0 NA Intergenic Intergenic 18067 ENSMUSG00000110583.1 ENSMUSG00000110583 ENSMUST00000212608 Gm7639 processed_pseudogene Interval_120934 chr4 151753009 151753369 + 0 NA intron (ENSMUSG00000014592.21, intron 2 of 7) protein_coding-intron (ENSMUSG00000014592.21, intron 3 of 23) 108515 ENSMUSG00000014592.21 ENSMUSG00000014592 ENSMUST00000135780 Camta1 protein_coding Interval_96516 chr2 125231234 125232048 + 0 NA Intergenic Intergenic -14129 ENSMUSG00000086416.1 ENSMUSG00000086416 ENSMUST00000123574 Gm14002 antisense Interval_81898 chr18 65685294 65685488 + 0 NA intron (ENSMUSG00000042439.13, intron 5 of 6) protein_coding-intron (ENSMUSG00000042439.13, intron 4 of 5) -12893 ENSMUSG00000046610.15 ENSMUSG00000046610 ENSMUST00000134343 Oacyl protein_coding Interval_84045 chr19 6933413 6934735 + 0 NA promoter-TSS (ENSMUSG00000024957.9) protein_coding-promoter-TSS (ENSMUSG00000024957.9) 6448 ENSMUSG00000024958.13 ENSMUSG00000024958 ENSMUST00000235363 Gpr137 protein_coding Interval_153931 chr8 11296445 11297834 + 0 NA intron (ENSMUSG00000031502.11, intron 1 of 52) protein_coding-intron (ENSMUSG00000031502.11, intron 1 of 51) -5872 ENSMUSG00000109358.1 ENSMUSG00000109358 ENSMUST00000209007 Gm44716 TEC Interval_96506 chr2 125154319 125154805 + 0 NA intron (ENSMUSG00000027202.12, intron 2 of 4) protein_coding-intron (ENSMUSG00000027202.12, intron 2 of 26) 1982 ENSMUSG00000027202.12 ENSMUSG00000027202 ENSMUST00000028630 Slc12a1 protein_coding Interval_121031 chr4 152331745 152331954 + 0 NA intron (ENSMUSG00000028936.15, intron 3 of 3) protein_coding-intron (ENSMUSG00000028936.15, intron 3 of 3) 5980 ENSMUSG00000028936.15 ENSMUSG00000028936 ENSMUST00000156445 Rpl22 protein_coding Interval_9081 chr1 153474803 153475012 + 0 NA intron (ENSMUSG00000042699.11, intron 3 of 14) protein_coding-intron (ENSMUSG00000042699.11, intron 7 of 27) 3232 ENSMUSG00000042699.11 ENSMUSG00000042699 ENSMUST00000189425 Dhx9 protein_coding Interval_58704 chr15 37226037 37226944 + 0 NA Intergenic Intergenic 6669 ENSMUSG00000089804.2 ENSMUSG00000089804 ENSMUST00000159411 Gm16136 antisense Interval_130033 chr5 123819305 123819512 + 0 NA promoter-TSS (ENSMUSG00000029414.11) protein_coding-promoter-TSS (ENSMUSG00000029414.11) 46091 ENSMUSG00000045502.6 ENSMUSG00000045502 ENSMUST00000057145 Hcar2 protein_coding Interval_72393 chr17 29556731 29557780 + 0 NA intron (ENSMUSG00000099329.2, intron 1 of 6) protein_coding-intron (ENSMUSG00000042203.8, intron 1 of 12) -4870 ENSMUSG00000079580.9 ENSMUSG00000079580 ENSMUST00000234176 Tmem217 protein_coding Interval_35782 chr12 29465021 29465659 + 0 NA Intergenic Intergenic 65775 ENSMUSG00000112390.1 ENSMUSG00000112390 ENSMUST00000218104 Gm20208 processed_transcript Interval_166986 chr9 64311348 64312375 + 0 NA exon (ENSMUSG00000032396.17, exon 12 of 17) protein_coding-exon (ENSMUSG00000032396.17, exon 12 of 17) 15930 ENSMUSG00000088254.1 ENSMUSG00000088254 ENSMUST00000157629 Gm24289 scaRNA Interval_151491 chr7 123054349 123054848 + 0 NA intron (ENSMUSG00000109814.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000109814.1, intron 1 of 3) 23183 ENSMUSG00000109814.1 ENSMUSG00000109814 ENSMUST00000209402 Gm45847 lincRNA Interval_36872 chr12 54843963 54844170 + 0 NA Intergenic Intergenic -18581 ENSMUSG00000113209.1 ENSMUSG00000113209 ENSMUST00000220682 1700081N11Rik bidirectional_promoter_lncRNA Interval_154252 chr8 13801518 13802577 + 0 NA Intergenic Intergenic 16412 ENSMUSG00000038398.8 ENSMUSG00000038398 ENSMUST00000211643 Upf3a protein_coding Interval_19860 chr10 110595539 110595755 + 0 NA promoter-TSS (ENSMUSG00000112398.1) lincRNA-promoter-TSS (ENSMUSG00000112398.1) -619 ENSMUSG00000112398.1 ENSMUSG00000112398 ENSMUST00000219459 9230102K24Rik lincRNA Interval_166477 chr9 59938458 59939122 + 0 NA intron (ENSMUSG00000110803.1, intron 2 of 3) antisense-intron (ENSMUSG00000110803.1, intron 2 of 3) 2287 ENSMUSG00000110803.1 ENSMUSG00000110803 ENSMUST00000215963 Gm20275 antisense Interval_3712 chr1 61569275 61569712 + 0 NA Intergenic Intergenic 21371 ENSMUSG00000100381.1 ENSMUSG00000100381 ENSMUST00000185262 Gm28094 processed_pseudogene Interval_12175 chr1 190541885 190542211 + 0 NA Intergenic Intergenic -52278 ENSMUSG00000103963.1 ENSMUSG00000103963 ENSMUST00000191893 Gm30932 lincRNA Interval_139049 chr6 94590714 94591372 + 0 NA intron (ENSMUSG00000045100.11, intron 1 of 4) protein_coding-intron (ENSMUSG00000045100.11, intron 6 of 9) 15372 ENSMUSG00000098531.1 ENSMUSG00000098531 ENSMUST00000183891 Mir7041 miRNA Interval_173063 chrX 69745115 69745409 + 0 NA intron (ENSMUSG00000031189.12, intron 6 of 7) protein_coding-intron (ENSMUSG00000031189.12, intron 6 of 19) -111433 ENSMUSG00000031189.12 ENSMUSG00000031189 ENSMUST00000151662 Aff2 protein_coding Interval_36894 chr12 55007254 55008067 + 0 NA intron (ENSMUSG00000035021.13, intron 1 of 3) protein_coding-intron (ENSMUSG00000035021.13, intron 1 of 3) 10588 ENSMUSG00000088922.1 ENSMUSG00000088922 ENSMUST00000158297 Gm24296 snRNA Interval_69714 chr16 95739501 95739775 + 0 NA Intergenic Intergenic -14662 ENSMUSG00000117167.1 ENSMUSG00000117167 ENSMUST00000233819 Gm6599 processed_pseudogene Interval_63723 chr15 103040586 103042913 + 0 NA Intergenic Intergenic 17557 ENSMUSG00000102297.1 ENSMUSG00000102297 ENSMUST00000193457 5730585A16Rik TEC Interval_105585 chr3 87919081 87920641 + 0 NA exon (ENSMUSG00000019710.13, exon 2 of 2) protein_coding-exon (ENSMUSG00000019710.13, exon 2 of 2) 304 ENSMUSG00000019710.13 ENSMUSG00000019710 ENSMUST00000121048 Mrpl24 protein_coding Interval_11235 chr1 180365073 180365881 + 0 NA TTS (ENSMUSG00000104388.1) TEC-TTS (ENSMUSG00000104388.1) -7192 ENSMUSG00000103123.1 ENSMUSG00000103123 ENSMUST00000192452 Gm37390 TEC Interval_142451 chr6 142406071 142406300 + 0 NA Intergenic Intergenic -7256 ENSMUSG00000071112.12 ENSMUSG00000071112 ENSMUST00000123209 Spx protein_coding Interval_5863 chr1 92751666 92751871 + 0 NA Intergenic Intergenic 8712 ENSMUSG00000099665.1 ENSMUSG00000099665 ENSMUST00000187845 Gm29482 lincRNA Interval_120094 chr4 141783245 141783737 + 0 NA intron (ENSMUSG00000040697.10, intron 3 of 3) protein_coding-intron (ENSMUSG00000040697.10, intron 3 of 14) 7440 ENSMUSG00000040697.10 ENSMUSG00000040697 ENSMUST00000153880 Dnajc16 protein_coding Interval_38995 chr12 84361386 84362489 + 0 NA promoter-TSS (ENSMUSG00000021234.9) protein_coding-promoter-TSS (ENSMUSG00000021234.9) -145 ENSMUSG00000021234.9 ENSMUSG00000021234 ENSMUST00000126752 Fam161b protein_coding Interval_19218 chr10 95566752 95566976 + 0 NA Intergenic Intergenic -2718 ENSMUSG00000020029.6 ENSMUSG00000020029 ENSMUST00000020217 Nudt4 protein_coding Interval_124040 chr5 37747107 37747547 + 0 NA Intergenic Intergenic 10047 ENSMUSG00000062329.4 ENSMUSG00000062329 ENSMUST00000201048 Cytl1 protein_coding Interval_24395 chr11 32935516 32935899 + 0 NA Intergenic Intergenic -9547 ENSMUSG00000085402.1 ENSMUSG00000085402 ENSMUST00000150073 Gm12111 lincRNA Interval_62699 chr15 96344517 96345242 + 0 NA intron (ENSMUSG00000033237.19, intron 3 of 4) protein_coding-intron (ENSMUSG00000033237.19, intron 3 of 20) -33935 ENSMUSG00000033237.19 ENSMUSG00000033237 ENSMUST00000176739 Arid2 protein_coding Interval_52804 chr14 50781771 50783077 + 0 NA intron (ENSMUSG00000006288.8, intron 1 of 5) protein_coding-intron (ENSMUSG00000006288.8, intron 1 of 9) 3075 ENSMUSG00000006288.8 ENSMUSG00000006288 ENSMUST00000227934 Ttc5 protein_coding Interval_166899 chr9 63802939 63803957 + 0 NA Intergenic Intergenic -1651 ENSMUSG00000111137.1 ENSMUSG00000111137 ENSMUST00000215986 Gm2553 processed_pseudogene Interval_92616 chr2 61528998 61529504 + 0 NA Intergenic Intergenic 36485 ENSMUSG00000088340.1 ENSMUSG00000088340 ENSMUST00000157715 Gm22338 snoRNA Interval_85403 chr19 25524098 25526307 + 0 NA intron (ENSMUSG00000024837.15, intron 2 of 3) protein_coding-intron (ENSMUSG00000024837.15, intron 2 of 4) 19495 ENSMUSG00000024837.15 ENSMUSG00000024837 ENSMUST00000160814 Dmrt1 protein_coding Interval_7378 chr1 130722867 130723629 + 0 NA exon (ENSMUSG00000046404.5, exon 2 of 2) protein_coding-exon (ENSMUSG00000046404.5, exon 2 of 2) 5573 ENSMUSG00000104515.1 ENSMUSG00000104515 ENSMUST00000195439 Gm37163 TEC Interval_89490 chr2 21008157 21008469 + 0 NA Intergenic Intergenic 39259 ENSMUSG00000075514.4 ENSMUSG00000075514 ENSMUST00000126967 Gm13375 antisense Interval_42980 chr13 22034873 22036704 + 0 NA promoter-TSS (ENSMUSG00000069302.5) protein_coding-promoter-TSS (ENSMUSG00000069302.5) -82 ENSMUSG00000062727.4 ENSMUSG00000062727 ENSMUST00000110455 H2bc12 protein_coding Interval_3904 chr1 64669474 64669849 + 0 NA Intergenic Intergenic 19726 ENSMUSG00000100437.1 ENSMUSG00000100437 ENSMUST00000189284 Gm29152 lincRNA Interval_1152 chr1 16169484 16170788 + 0 NA Intergenic Intergenic 39634 ENSMUSG00000025921.7 ENSMUSG00000025921 ENSMUST00000152626 Rdh10 protein_coding Interval_42351 chr13 12286940 12287441 + 0 NA intron (ENSMUSG00000052374.16, intron 13 of 21) protein_coding-intron (ENSMUSG00000052374.16, intron 12 of 20) -13094 ENSMUSG00000052374.16 ENSMUSG00000052374 ENSMUST00000110616 Actn2 protein_coding Interval_154788 chr8 23377397 23377742 + 0 NA Intergenic Intergenic -33933 ENSMUSG00000031548.7 ENSMUSG00000031548 ENSMUST00000033952 Sfrp1 protein_coding Interval_130830 chr5 131047917 131049081 + 0 NA intron (ENSMUSG00000034040.16, intron 5 of 5) protein_coding-intron (ENSMUSG00000034040.16, intron 5 of 10) -5529 ENSMUSG00000106729.1 ENSMUSG00000106729 ENSMUST00000200842 Gm43165 TEC Interval_131342 chr5 136588574 136590034 + 0 NA Intergenic Intergenic -21814 ENSMUSG00000029705.17 ENSMUSG00000029705 ENSMUST00000177305 Cux1 protein_coding Interval_147844 chr7 74108376 74108798 + 0 NA Intergenic Intergenic -64849 ENSMUSG00000108725.1 ENSMUSG00000108725 ENSMUST00000205302 Gm45004 lincRNA Interval_140946 chr6 122926259 122926863 + 0 NA intron (ENSMUSG00000049037.8, intron 2 of 5) protein_coding-intron (ENSMUSG00000049037.8, intron 2 of 5) 4713 ENSMUSG00000049037.8 ENSMUSG00000049037 ENSMUST00000060484 Clec4a1 protein_coding Interval_56701 chr14 121464926 121465509 + 0 NA intron (ENSMUSG00000025557.10, intron 20 of 22) protein_coding-intron (ENSMUSG00000025557.10, intron 20 of 22) -9455 ENSMUSG00000115123.1 ENSMUSG00000115123 ENSMUST00000227451 Gm33299 lincRNA Interval_61362 chr15 81072729 81073039 + 0 NA intron (ENSMUSG00000042292.18, intron 2 of 13) protein_coding-intron (ENSMUSG00000042292.18, intron 1 of 12) -5872 ENSMUSG00000042292.18 ENSMUSG00000042292 ENSMUST00000147921 Mrtfa protein_coding Interval_62076 chr15 86237712 86237920 + 0 NA intron (ENSMUSG00000051864.10, intron 1 of 3) protein_coding-intron (ENSMUSG00000051864.10, intron 3 of 12) 2311 ENSMUSG00000051864.10 ENSMUSG00000051864 ENSMUST00000229242 Tbc1d22a protein_coding Interval_73171 chr17 35253102 35255392 + 0 NA TTS (ENSMUSG00000019432.15) protein_coding-TTS (ENSMUSG00000019432.15) 2958 ENSMUSG00000098269.1 ENSMUSG00000098269 ENSMUST00000183361 Mir8094 miRNA Interval_32657 chr11 109461084 109461487 + 0 NA intron (ENSMUSG00000041920.14, intron 2 of 2) protein_coding-intron (ENSMUSG00000041920.14, intron 2 of 2) 5146 ENSMUSG00000080530.1 ENSMUSG00000080530 ENSMUST00000116880 Gm25540 miRNA Interval_59876 chr15 60536367 60536809 + 0 NA Intergenic Intergenic 68464 ENSMUSG00000115503.1 ENSMUSG00000115503 ENSMUST00000227906 Gm6392 processed_pseudogene Interval_65123 chr16 19908233 19908522 + 0 NA Intergenic Intergenic -24103 ENSMUSG00000075330.4 ENSMUSG00000075330 ENSMUST00000231564 A930003A15Rik protein_coding Interval_57077 chr15 5757302 5757532 + 0 NA Intergenic Intergenic 43383 ENSMUSG00000115185.1 ENSMUSG00000115185 ENSMUST00000226984 Gm18715 processed_pseudogene Interval_156498 chr8 48745079 48745661 + 0 NA intron (ENSMUSG00000031561.16, intron 1 of 2) protein_coding-intron (ENSMUSG00000031561.16, intron 1 of 2) -98352 ENSMUSG00000100706.6 ENSMUSG00000100706 ENSMUST00000188936 Gm19744 processed_transcript Interval_48046 chr13 95545752 95548798 + 0 NA Intergenic Intergenic 11685 ENSMUSG00000113359.1 ENSMUSG00000113359 ENSMUST00000220746 Gm48730 lincRNA Interval_64974 chr16 17621828 17622177 + 0 NA TTS (ENSMUSG00000005899.14) protein_coding-TTS (ENSMUSG00000005899.14) 2639 ENSMUSG00000005899.14 ENSMUSG00000005899 ENSMUST00000232270 Smpd4 protein_coding Interval_131352 chr5 136660451 136661013 + 0 NA Intergenic Intergenic -37047 ENSMUSG00000005474.9 ENSMUSG00000005474 ENSMUST00000197849 Myl10 protein_coding Interval_126547 chr5 90169789 90169982 + 0 NA Intergenic Intergenic 37656 ENSMUSG00000043618.9 ENSMUSG00000043618 ENSMUST00000135410 Eif5al3-ps processed_pseudogene Interval_6550 chr1 116153794 116153978 + 0 NA intron (ENSMUSG00000070695.4, intron 7 of 23) protein_coding-intron (ENSMUSG00000070695.4, intron 7 of 23) 240527 ENSMUSG00000092948.1 ENSMUSG00000092948 ENSMUST00000175207 Gm23393 miRNA Interval_124523 chr5 50014460 50014821 + 0 NA intron (ENSMUSG00000029090.12, intron 3 of 18) protein_coding-intron (ENSMUSG00000029090.12, intron 3 of 18) 44005 ENSMUSG00000029090.12 ENSMUSG00000029090 ENSMUST00000199132 Adgra3 protein_coding Interval_51683 chr14 31347812 31348027 + 0 NA intron (ENSMUSG00000021893.14, intron 5 of 19) protein_coding-intron (ENSMUSG00000021893.14, intron 5 of 20) -17637 ENSMUSG00000021893.14 ENSMUSG00000021893 ENSMUST00000228237 Capn7 protein_coding Interval_17123 chr10 71461975 71463208 + 0 NA Intergenic Intergenic -20490 ENSMUSG00000112608.1 ENSMUSG00000112608 ENSMUST00000217831 Gm46233 processed_pseudogene Interval_60945 chr15 78072141 78072619 + 0 NA intron (ENSMUSG00000019146.2, intron 1 of 3) protein_coding-intron (ENSMUSG00000019146.2, intron 1 of 3) -47326 ENSMUSG00000092375.1 ENSMUSG00000092375 ENSMUST00000174277 A730060N03Rik antisense Interval_104494 chr3 66796470 66798265 + 0 NA Intergenic Intergenic -84983 ENSMUSG00000103700.1 ENSMUSG00000103700 ENSMUST00000195167 Gm6555 processed_pseudogene Interval_160548 chr8 110563327 110563828 + 0 NA intron (ENSMUSG00000059854.8, intron 59 of 86) protein_coding-intron (ENSMUSG00000059854.8, intron 59 of 86) -6715 ENSMUSG00000105825.1 ENSMUSG00000105825 ENSMUST00000104619 Gm44489 miRNA Interval_131244 chr5 135968957 135969316 + 0 NA intron (ENSMUSG00000029699.13, intron 2 of 4) protein_coding-intron (ENSMUSG00000029699.13, intron 2 of 10) -1216 ENSMUSG00000029699.13 ENSMUSG00000029699 ENSMUST00000154181 Ssc4d protein_coding Interval_37329 chr12 65147653 65147857 + 0 NA intron (ENSMUSG00000047534.17, intron 7 of 12) protein_coding-intron (ENSMUSG00000047534.17, intron 8 of 13) 24843 ENSMUSG00000047534.17 ENSMUSG00000047534 ENSMUST00000131753 Mis18bp1 protein_coding Interval_85049 chr19 21799560 21799773 + 0 NA exon (ENSMUSG00000024754.13, exon 4 of 4) protein_coding-exon (ENSMUSG00000024754.13, exon 4 of 4) 21278 ENSMUSG00000024754.13 ENSMUSG00000024754 ENSMUST00000238079 Cemip2 protein_coding Interval_40439 chr12 104896910 104897573 + 0 NA Intergenic Intergenic 29448 ENSMUSG00000100975.2 ENSMUSG00000100975 ENSMUST00000185486 Gm28875 lincRNA Interval_93440 chr2 73069897 73071364 + 0 NA Intergenic Intergenic -46118 ENSMUSG00000082455.3 ENSMUSG00000082455 ENSMUST00000120830 Gm13665 processed_pseudogene Interval_72401 chr17 29614305 29615510 + 0 NA promoter-TSS (ENSMUSG00000098374.1) protein_coding-promoter-TSS (ENSMUSG00000098374.1) 31 ENSMUSG00000098374.1 ENSMUSG00000098374 ENSMUST00000130871 Gm28043 protein_coding Interval_105416 chr3 86099631 86099976 + 0 NA promoter-TSS (ENSMUSG00000065847.1) snoRNA-promoter-TSS (ENSMUSG00000065847.1) -731 ENSMUSG00000065847.1 ENSMUSG00000065847 ENSMUST00000083913 Gm25188 snoRNA Interval_48460 chr13 99181577 99182574 + 0 NA Intergenic Intergenic -2748 ENSMUSG00000050919.9 ENSMUSG00000050919 ENSMUST00000056558 Zfp366 protein_coding Interval_155405 chr8 33346016 33346392 + 0 NA intron (ENSMUSG00000031583.13, intron 4 of 8) protein_coding-intron (ENSMUSG00000031583.13, intron 3 of 33) -15654 ENSMUSG00000031583.13 ENSMUSG00000031583 ENSMUST00000209293 Wrn protein_coding Interval_52631 chr14 48134177 48134545 + 0 NA exon (ENSMUSG00000115686.1, exon 1 of 1) TEC-exon (ENSMUSG00000115686.1, exon 1 of 1) 137 ENSMUSG00000115686.1 ENSMUSG00000115686 ENSMUST00000228432 Gm49310 TEC Interval_159803 chr8 103832598 103832942 + 0 NA Intergenic Intergenic 228971 ENSMUSG00000110336.1 ENSMUSG00000110336 ENSMUST00000211119 4933400L20Rik lincRNA Interval_123181 chr5 30441760 30442747 + 0 NA intron (ENSMUSG00000062372.13, intron 1 of 45) protein_coding-intron (ENSMUSG00000062372.13, intron 1 of 46) 19606 ENSMUSG00000062372.13 ENSMUSG00000062372 ENSMUST00000128177 Otof protein_coding Interval_20332 chr10 116942790 116943457 + 0 NA intron (ENSMUSG00000064181.6, intron 1 of 2) protein_coding-intron (ENSMUSG00000064181.6, intron 1 of 9) -7444 ENSMUSG00000112627.1 ENSMUSG00000112627 ENSMUST00000217853 4933412E12Rik bidirectional_promoter_lncRNA Interval_62938 chr15 98027226 98027902 + 0 NA Intergenic Intergenic -23073 ENSMUSG00000022483.17 ENSMUSG00000022483 ENSMUST00000230148 Col2a1 protein_coding Interval_74510 chr17 52565602 52565955 + 0 NA Intergenic Intergenic 36882 ENSMUSG00000098552.1 ENSMUSG00000098552 ENSMUST00000183438 Gm27217 antisense Interval_159271 chr8 92652156 92652951 + 0 NA Intergenic Intergenic -22273 ENSMUSG00000031738.14 ENSMUSG00000031738 ENSMUST00000167261 Irx6 protein_coding Interval_62908 chr15 97825120 97826120 + 0 NA intron (ENSMUSG00000022475.19, intron 1 of 21) protein_coding-intron (ENSMUSG00000022475.19, intron 1 of 24) 5874 ENSMUSG00000022475.19 ENSMUSG00000022475 ENSMUST00000134258 Hdac7 protein_coding Interval_44579 chr13 46361331 46361947 + 0 NA Intergenic Intergenic -60183 ENSMUSG00000038132.6 ENSMUSG00000038132 ENSMUST00000225890 Rbm24 protein_coding Interval_32024 chr11 104536386 104536615 + 0 NA intron (ENSMUSG00000020687.13, intron 2 of 3) protein_coding-intron (ENSMUSG00000020687.13, intron 2 of 18) 14120 ENSMUSG00000020687.13 ENSMUSG00000020687 ENSMUST00000135303 Cdc27 protein_coding Interval_70291 chr17 8260371 8261184 + 0 NA Intergenic Intergenic 15719 ENSMUSG00000040899.14 ENSMUSG00000040899 ENSMUST00000231545 Ccr6 protein_coding Interval_148078 chr7 79093884 79094164 + 0 NA exon (ENSMUSG00000030607.7, exon 10 of 17) protein_coding-exon (ENSMUSG00000030607.7, exon 10 of 17) -5727 ENSMUSG00000030607.7 ENSMUSG00000030607 ENSMUST00000206779 Acan protein_coding Interval_149730 chr7 100984456 100985499 + 0 NA Intergenic Intergenic -10328 ENSMUSG00000048779.5 ENSMUSG00000048779 ENSMUST00000208653 P2ry6 protein_coding Interval_61706 chr15 83500206 83500612 + 0 NA intron (ENSMUSG00000022442.16, intron 5 of 11) protein_coding-intron (ENSMUSG00000022442.16, intron 5 of 11) 10384 ENSMUSG00000022442.16 ENSMUSG00000022442 ENSMUST00000154401 Ttll1 protein_coding Interval_37462 chr12 69146647 69146876 + 0 NA Intergenic Intergenic -4695 ENSMUSG00000083191.1 ENSMUSG00000083191 ENSMUST00000119887 Gm15571 processed_pseudogene Interval_17142 chr10 72492860 72493505 + 0 NA Intergenic Intergenic -34368 ENSMUSG00000077642.1 ENSMUSG00000077642 ENSMUST00000104454 Gm24984 snoRNA Interval_119526 chr4 138139543 138139936 + 0 NA intron (ENSMUSG00000028760.16, intron 11 of 33) protein_coding-intron (ENSMUSG00000028760.16, intron 12 of 34) -1221 ENSMUSG00000084804.1 ENSMUSG00000084804 ENSMUST00000124620 1700095J12Rik antisense Interval_106469 chr3 96551377 96552134 + 0 NA Intergenic Intergenic -7756 ENSMUSG00000038393.14 ENSMUSG00000038393 ENSMUST00000128221 Txnip protein_coding Interval_119726 chr4 139500228 139501874 + 0 NA Intergenic Intergenic -73669 ENSMUSG00000041025.15 ENSMUSG00000041025 ENSMUST00000174078 Iffo2 protein_coding Interval_37051 chr12 57024979 57025568 + 0 NA intron (ENSMUSG00000035472.14, intron 1 of 9) protein_coding-intron (ENSMUSG00000035472.14, intron 1 of 9) 135370 ENSMUSG00000035472.14 ENSMUSG00000035472 ENSMUST00000160892 Slc25a21 protein_coding Interval_9377 chr1 156660030 156661327 + 0 NA TTS (ENSMUSG00000060519.11) protein_coding-TTS (ENSMUSG00000060519.11) 13657 ENSMUSG00000060519.11 ENSMUSG00000060519 ENSMUST00000190607 Tor3a protein_coding Interval_115840 chr4 105190163 105190644 + 0 NA intron (ENSMUSG00000028517.8, intron 1 of 5) protein_coding-intron (ENSMUSG00000028517.8, intron 1 of 5) 33056 ENSMUSG00000028517.8 ENSMUSG00000028517 ENSMUST00000064139 Plpp3 protein_coding Interval_41006 chr12 110551056 110551258 + 0 NA TTS (ENSMUSG00000017843.14) protein_coding-TTS (ENSMUSG00000017843.14) -39355 ENSMUSG00000113361.1 ENSMUSG00000113361 ENSMUST00000221143 B930059L03Rik lincRNA Interval_70575 chr17 12089853 12090400 + 0 NA Intergenic Intergenic -29203 ENSMUSG00000023827.8 ENSMUSG00000023827 ENSMUST00000167905 Agpat4 protein_coding Interval_94102 chr2 84142428 84142625 + 0 NA Intergenic Intergenic -2364 ENSMUSG00000081980.1 ENSMUSG00000081980 ENSMUST00000118542 Gm13702 processed_pseudogene Interval_37249 chr12 63010553 63011953 + 0 NA Intergenic Intergenic 61891 ENSMUSG00000058933.5 ENSMUSG00000058933 ENSMUST00000080271 Gm5185 processed_pseudogene Interval_79173 chr18 25402153 25403538 + 0 NA intron (ENSMUSG00000033632.16, intron 10 of 11) protein_coding-intron (ENSMUSG00000033632.16, intron 8 of 9) 11044 ENSMUSG00000089908.1 ENSMUSG00000089908 ENSMUST00000163015 Gm16558 processed_pseudogene Interval_161973 chr8 124203991 124204586 + 0 NA intron (ENSMUSG00000092329.1, intron 1 of 15) protein_coding-intron (ENSMUSG00000092329.1, intron 1 of 15) 44215 ENSMUSG00000110482.1 ENSMUSG00000110482 ENSMUST00000212467 Gm3889 processed_pseudogene Interval_171742 chr9 120657118 120657791 + 0 NA Intergenic Intergenic -16951 ENSMUSG00000111533.1 ENSMUSG00000111533 ENSMUST00000214671 Gm39458 processed_transcript Interval_138600 chr6 90304296 90304704 + 0 NA intron (ENSMUSG00000049694.13, intron 3 of 3) protein_coding-intron (ENSMUSG00000049694.13, intron 4 of 4) 2384 ENSMUSG00000049694.13 ENSMUSG00000049694 ENSMUST00000167550 BC048671 protein_coding Interval_30143 chr11 89672319 89672838 + 0 NA intron (ENSMUSG00000047773.15, intron 3 of 21) protein_coding-intron (ENSMUSG00000047773.15, intron 1 of 16) 168688 ENSMUSG00000047773.15 ENSMUSG00000047773 ENSMUST00000207171 Ankfn1 protein_coding Interval_70900 chr17 15734385 15734728 + 0 NA intron (ENSMUSG00000023852.14, intron 11 of 22) protein_coding-intron (ENSMUSG00000023852.14, intron 11 of 35) -3979 ENSMUSG00000023852.14 ENSMUSG00000023852 ENSMUST00000173040 Chd1 protein_coding Interval_14602 chr10 36916849 36917067 + 0 NA Intergenic Intergenic -74808 ENSMUSG00000019777.16 ENSMUSG00000019777 ENSMUST00000123010 Hdac2 protein_coding Interval_158125 chr8 79027992 79031196 + 0 NA intron (ENSMUSG00000071064.15, intron 1 of 13) protein_coding-intron (ENSMUSG00000071064.15, intron 1 of 2) 1007 ENSMUSG00000071064.15 ENSMUSG00000071064 ENSMUST00000129613 Zfp827 protein_coding Interval_62285 chr15 89457618 89457891 + 0 NA exon (ENSMUSG00000022619.5, exon 5 of 12) protein_coding-exon (ENSMUSG00000022619.5, exon 5 of 12) 2712 ENSMUSG00000022619.5 ENSMUSG00000022619 ENSMUST00000137755 Mapk8ip2 protein_coding Interval_154892 chr8 24843099 24843778 + 0 NA intron (ENSMUSG00000037437.18, intron 3 of 4) protein_coding-intron (ENSMUSG00000037437.18, intron 18 of 19) -19372 ENSMUSG00000031554.18 ENSMUSG00000031554 ENSMUST00000118419 Adam5 protein_coding Interval_51491 chr14 28458621 28459274 + 0 NA intron (ENSMUSG00000040640.11, intron 1 of 1) protein_coding-intron (ENSMUSG00000040640.11, intron 15 of 15) 3426 ENSMUSG00000040640.11 ENSMUSG00000040640 ENSMUST00000224045 Erc2 protein_coding Interval_133049 chr5 149513424 149514562 + 0 NA intron (ENSMUSG00000107132.1, intron 1 of 4) antisense-intron (ENSMUSG00000107132.1, intron 1 of 4) -10941 ENSMUSG00000106879.1 ENSMUSG00000106879 ENSMUST00000201267 Gm2566 processed_pseudogene Interval_34089 chr11 120457128 120459392 + 0 NA promoter-TSS (ENSMUSG00000039670.2) protein_coding-promoter-TSS (ENSMUSG00000039670.2) 74 ENSMUSG00000049957.14 ENSMUSG00000049957 ENSMUST00000148849 Ccdc137 protein_coding Interval_25853 chr11 52149029 52149581 + 0 NA Intergenic Intergenic -3777 ENSMUSG00000062204.1 ENSMUSG00000062204 ENSMUST00000078264 Olfr1373 protein_coding Interval_62598 chr15 95228865 95229229 + 0 NA intron (ENSMUSG00000022454.17, intron 20 of 20) protein_coding-intron (ENSMUSG00000022454.17, intron 20 of 20) -66653 ENSMUSG00000100603.6 ENSMUSG00000100603 ENSMUST00000185302 1700129L04Rik sense_intronic Interval_69610 chr16 94601072 94603402 + 0 NA intron (ENSMUSG00000022897.15, intron 1 of 5) protein_coding-intron (ENSMUSG00000022897.15, intron 1 of 11) -18140 ENSMUSG00000081692.1 ENSMUSG00000081692 ENSMUST00000119372 Gm15971 processed_pseudogene Interval_116060 chr4 107332918 107333974 + 0 NA intron (ENSMUSG00000057375.13, intron 1 of 4) protein_coding-intron (ENSMUSG00000057375.13, intron 3 of 9) -4947 ENSMUSG00000082279.1 ENSMUSG00000082279 ENSMUST00000121383 Gm12870 processed_pseudogene Interval_58078 chr15 27680954 27681968 + 0 NA promoter-TSS (ENSMUSG00000056069.10) protein_coding-promoter-TSS (ENSMUSG00000056069.10) -21309 ENSMUSG00000056069.10 ENSMUSG00000056069 ENSMUST00000232492 Otulinl protein_coding Interval_131304 chr5 136281115 136281992 + 0 NA intron (ENSMUSG00000029705.17, intron 22 of 23) protein_coding-intron (ENSMUSG00000029705.17, intron 22 of 23) 6557 ENSMUSG00000086220.1 ENSMUSG00000086220 ENSMUST00000148082 Gm16599 antisense Interval_61124 chr15 79389309 79389649 + 0 NA intron (ENSMUSG00000009035.15, intron 1 of 2) protein_coding-intron (ENSMUSG00000009035.15, intron 1 of 8) 13760 ENSMUSG00000009035.15 ENSMUSG00000009035 ENSMUST00000229049 Tmem184b protein_coding Interval_161130 chr8 117670535 117670741 + 0 NA intron (ENSMUSG00000034308.13, intron 1 of 2) protein_coding-intron (ENSMUSG00000034308.13, intron 1 of 2) 3051 ENSMUSG00000034308.13 ENSMUSG00000034308 ENSMUST00000174450 Sdr42e1 protein_coding Interval_172186 chrX 8282443 8282819 + 0 NA Intergenic Intergenic 11498 ENSMUSG00000031170.14 ENSMUSG00000031170 ENSMUST00000115590 Slc38a5 protein_coding Interval_70485 chr17 10617431 10617967 + 0 NA intron (ENSMUSG00000037196.6, intron 2 of 4) protein_coding-intron (ENSMUSG00000037196.6, intron 2 of 4) 13368 ENSMUSG00000037196.6 ENSMUSG00000037196 ENSMUST00000160599 Pacrg protein_coding Interval_37390 chr12 66339370 66339616 + 0 NA intron (ENSMUSG00000114093.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000114093.1, intron 1 of 2) 28892 ENSMUSG00000114093.1 ENSMUSG00000114093 ENSMUST00000221562 Gm47979 lincRNA Interval_164183 chr9 32259161 32259606 + 0 NA exon (ENSMUSG00000041444.14, exon 13 of 13) protein_coding-exon (ENSMUSG00000041444.14, exon 13 of 13) 34791 ENSMUSG00000041444.14 ENSMUSG00000041444 ENSMUST00000174730 Arhgap32 protein_coding Interval_140147 chr6 114845941 114847378 + 0 NA intron (ENSMUSG00000030314.16, intron 20 of 20) protein_coding-intron (ENSMUSG00000030314.16, intron 18 of 18) 57269 ENSMUSG00000107395.1 ENSMUSG00000107395 ENSMUST00000203217 Gm44331 processed_pseudogene Interval_88945 chr2 13335684 13336089 + 0 NA intron (ENSMUSG00000026726.10, intron 44 of 66) protein_coding-intron (ENSMUSG00000026726.10, intron 44 of 66) 64284 ENSMUSG00000086358.2 ENSMUSG00000086358 ENSMUST00000193685 Gm13270 processed_transcript Interval_52447 chr14 46505433 46505691 + 0 NA intron (ENSMUSG00000115158.1, intron 2 of 2) lincRNA-intron (ENSMUSG00000115158.1, intron 2 of 2) 10880 ENSMUSG00000115158.1 ENSMUSG00000115158 ENSMUST00000227980 Gm48912 lincRNA Interval_112531 chr4 42902159 42902846 + 0 NA Intergenic Intergenic -14158 ENSMUSG00000036062.13 ENSMUSG00000036062 ENSMUST00000131234 Phf24 protein_coding Interval_17566 chr10 77815255 77815824 + 0 NA TTS (ENSMUSG00000112600.1) protein_coding-TTS (ENSMUSG00000112600.1) 857 ENSMUSG00000112600.1 ENSMUSG00000112600 ENSMUST00000220393 Gm49918 protein_coding Interval_21198 chr10 127170149 127171541 + 0 NA TTS (ENSMUSG00000006731.10) protein_coding-TTS (ENSMUSG00000006731.10) 4268 ENSMUSG00000040441.12 ENSMUSG00000040441 ENSMUST00000220327 Slc26a10 protein_coding Interval_110031 chr3 152666957 152668754 + 0 NA exon (ENSMUSG00000039058.11, exon 1 of 14) protein_coding-exon (ENSMUSG00000039058.11, exon 1 of 14) 942 ENSMUSG00000097745.1 ENSMUSG00000097745 ENSMUST00000181093 AI115009 antisense Interval_164576 chr9 39152265 39153156 + 0 NA Intergenic Intergenic -6214 ENSMUSG00000110736.1 ENSMUSG00000110736 ENSMUST00000215640 Olfr942-ps1 unprocessed_pseudogene Interval_86626 chr19 42141964 42143435 + 0 NA Intergenic Intergenic -5009 ENSMUSG00000044345.9 ENSMUSG00000044345 ENSMUST00000184186 Marveld1 protein_coding Interval_94310 chr2 88074871 88075550 + 0 NA Intergenic Intergenic -3380 ENSMUSG00000075137.4 ENSMUSG00000075137 ENSMUST00000099835 Olfr1163 protein_coding Interval_28307 chr11 75083886 75084202 + 0 NA intron (ENSMUSG00000038290.15, intron 4 of 4) protein_coding-intron (ENSMUSG00000038290.15, intron 13 of 18) -12831 ENSMUSG00000082481.1 ENSMUSG00000082481 ENSMUST00000119773 Rps12-ps19 processed_pseudogene Interval_40717 chr12 107889790 107890295 + 0 NA Intergenic Intergenic -106001 ENSMUSG00000086975.1 ENSMUSG00000086975 ENSMUST00000134448 Gm15208 lincRNA Interval_10497 chr1 171321672 171322594 + 0 NA exon (ENSMUSG00000103983.1, exon 1 of 1) lincRNA-exon (ENSMUSG00000103983.1, exon 1 of 1) 4044 ENSMUSG00000103983.1 ENSMUSG00000103983 ENSMUST00000192658 Gm20045 lincRNA Interval_55535 chr14 91174626 91174993 + 0 NA Intergenic Intergenic 25069 ENSMUSG00000115225.1 ENSMUSG00000115225 ENSMUST00000226887 Gm7272 processed_pseudogene Interval_94762 chr2 94069690 94070993 + 0 NA intron (ENSMUSG00000027195.10, intron 3 of 9) protein_coding-intron (ENSMUSG00000027195.10, intron 4 of 10) -3577 ENSMUSG00000027195.10 ENSMUSG00000027195 ENSMUST00000141955 Hsd17b12 protein_coding Interval_53331 chr14 56303531 56304434 + 0 NA Intergenic Intergenic 28189 ENSMUSG00000114820.1 ENSMUSG00000114820 ENSMUST00000224940 Gm48200 processed_pseudogene Interval_86697 chr19 42731862 42732086 + 0 NA intron (ENSMUSG00000060224.4, intron 12 of 15) protein_coding-intron (ENSMUSG00000060224.4, intron 12 of 15) -13797 ENSMUSG00000118354.1 ENSMUSG00000118354 ENSMUST00000236540 Gm19437 antisense Interval_121704 chr5 5504381 5505153 + 0 NA TTS (ENSMUSG00000046798.14) protein_coding-TTS (ENSMUSG00000046798.14) 10145 ENSMUSG00000046798.14 ENSMUSG00000046798 ENSMUST00000134157 Cldn12 protein_coding Interval_171092 chr9 114499836 114502006 + 0 NA intron (ENSMUSG00000047898.7, intron 2 of 2) protein_coding-intron (ENSMUSG00000047898.7, intron 2 of 2) 3995 ENSMUSG00000047898.7 ENSMUSG00000047898 ENSMUST00000215959 Ccr4 protein_coding Interval_21125 chr10 126716102 126716447 + 0 NA intron (ENSMUSG00000111961.1, intron 2 of 2) lincRNA-intron (ENSMUSG00000111961.1, intron 2 of 2) 3120 ENSMUSG00000111961.1 ENSMUSG00000111961 ENSMUST00000217923 Gm47966 lincRNA Interval_43087 chr13 23756856 23757502 + 0 NA exon (ENSMUSG00000069266.5, exon 1 of 1) protein_coding-exon (ENSMUSG00000069266.5, exon 1 of 1) 166 ENSMUSG00000069266.5 ENSMUSG00000069266 ENSMUST00000102965 H4c2 protein_coding Interval_54728 chr14 73637611 73637940 + 0 NA Intergenic Intergenic -23450 ENSMUSG00000096463.1 ENSMUSG00000096463 ENSMUST00000098874 Gm21750 protein_coding Interval_154046 chr8 12223634 12223835 + 0 NA Intergenic Intergenic -55085 ENSMUSG00000074473.1 ENSMUSG00000074473 ENSMUST00000098935 A230072I06Rik protein_coding Interval_134539 chr6 29414646 29415607 + 0 NA intron (ENSMUSG00000029769.16, intron 1 of 2) protein_coding-intron (ENSMUSG00000029769.16, intron 1 of 2) 5021 ENSMUSG00000029769.16 ENSMUSG00000029769 ENSMUST00000143599 Ccdc136 protein_coding Interval_114138 chr4 64171575 64171780 + 0 NA Intergenic Intergenic 23124 ENSMUSG00000073821.11 ENSMUSG00000073821 ENSMUST00000166003 8030451A03Rik processed_transcript Interval_93144 chr2 70573740 70573985 + 0 NA intron (ENSMUSG00000070880.10, intron 4 of 4) protein_coding-intron (ENSMUSG00000070880.10, intron 4 of 16) 11699 ENSMUSG00000070880.10 ENSMUSG00000070880 ENSMUST00000140478 Gad1 protein_coding Interval_94293 chr2 87550261 87550458 + 0 NA Intergenic Intergenic -3157 ENSMUSG00000082417.1 ENSMUSG00000082417 ENSMUST00000120590 Gm13740 processed_pseudogene Interval_157460 chr8 70505963 70507173 + 0 NA promoter-TSS (ENSMUSG00000058833.11) protein_coding-promoter-TSS (ENSMUSG00000058833.11) -456 ENSMUSG00000058833.11 ENSMUSG00000058833 ENSMUST00000128620 Rex1bd protein_coding Interval_132288 chr5 143950445 143950868 + 0 NA intron (ENSMUSG00000075569.10, intron 9 of 20) protein_coding-intron (ENSMUSG00000075569.10, intron 9 of 20) -9036 ENSMUSG00000075569.10 ENSMUSG00000075569 ENSMUST00000164604 Rsph10b protein_coding Interval_9681 chr1 160994384 160995234 + 0 NA intron (ENSMUSG00000026715.12, intron 3 of 4) protein_coding-intron (ENSMUSG00000026715.12, intron 4 of 7) 7036 ENSMUSG00000103680.1 ENSMUSG00000103680 ENSMUST00000194570 Gm37072 TEC Interval_123043 chr5 29139073 29139927 + 0 NA Intergenic Intergenic -57087 ENSMUSG00000029130.12 ENSMUSG00000029130 ENSMUST00000163050 Rnf32 protein_coding Interval_32150 chr11 105651865 105652586 + 0 NA intron (ENSMUSG00000053580.16, intron 2 of 4) protein_coding-intron (ENSMUSG00000053580.16, intron 2 of 25) -21197 ENSMUSG00000053580.16 ENSMUSG00000053580 ENSMUST00000147975 Tanc2 protein_coding Interval_173835 chrX 105875115 105876093 + 0 NA promoter-TSS (ENSMUSG00000031229.16) protein_coding-promoter-TSS (ENSMUSG00000031229.16) -299 ENSMUSG00000031229.16 ENSMUSG00000031229 ENSMUST00000126345 Atrx protein_coding Interval_76734 chr17 83742399 83743206 + 0 NA intron (ENSMUSG00000055817.18, intron 2 of 2) protein_coding-intron (ENSMUSG00000055817.18, intron 4 of 16) 13638 ENSMUSG00000055817.18 ENSMUSG00000055817 ENSMUST00000175920 Mta3 protein_coding Interval_51218 chr14 25138752 25139129 + 0 NA TTS (ENSMUSG00000114916.1) lincRNA-TTS (ENSMUSG00000114916.1) 4301 ENSMUSG00000114916.1 ENSMUSG00000114916 ENSMUST00000225429 4930572O13Rik lincRNA Interval_160222 chr8 107244603 107244804 + 0 NA Intergenic Intergenic 18545 ENSMUSG00000057657.4 ENSMUSG00000057657 ENSMUST00000080443 Rps18-ps3 processed_pseudogene Interval_33518 chr11 116999158 117000729 + 0 NA Intergenic Intergenic 40245 ENSMUSG00000086902.7 ENSMUSG00000086902 ENSMUST00000152401 Gm11728 lincRNA Interval_119288 chr4 136667673 136668252 + 0 NA intron (ENSMUSG00000028664.14, intron 5 of 5) protein_coding-intron (ENSMUSG00000028664.14, intron 9 of 15) 26078 ENSMUSG00000028664.14 ENSMUSG00000028664 ENSMUST00000144573 Ephb2 protein_coding Interval_171715 chr9 120425529 120426320 + 0 NA intron (ENSMUSG00000041794.13, intron 7 of 8) protein_coding-intron (ENSMUSG00000041794.13, intron 8 of 16) 39615 ENSMUSG00000041794.13 ENSMUSG00000041794 ENSMUST00000129168 Myrip protein_coding Interval_112490 chr4 41568944 41570026 + 0 NA promoter-TSS (ENSMUSG00000061322.15) protein_coding-promoter-TSS (ENSMUSG00000061322.15) 53 ENSMUSG00000028439.14 ENSMUSG00000028439 ENSMUST00000146276 Fam219a protein_coding Interval_91395 chr2 38534844 38536725 + 0 NA promoter-TSS (ENSMUSG00000108210.1) TEC-promoter-TSS (ENSMUSG00000108210.1) -77 ENSMUSG00000108210.1 ENSMUSG00000108210 ENSMUST00000204769 Gm35808 TEC Interval_377 chr1 4762710 4762936 + 0 NA Intergenic Intergenic -8308 ENSMUSG00000103922.1 ENSMUSG00000103922 ENSMUST00000193658 Gm6123 processed_pseudogene Interval_15320 chr10 44478142 44478548 + 0 NA intron (ENSMUSG00000038151.13, intron 1 of 3) protein_coding-intron (ENSMUSG00000038151.13, intron 1 of 3) -21135 ENSMUSG00000038151.13 ENSMUSG00000038151 ENSMUST00000167340 Prdm1 protein_coding Interval_67490 chr16 49839452 49840683 + 0 NA intron (ENSMUSG00000055447.19, intron 4 of 12) protein_coding-intron (ENSMUSG00000055447.19, intron 4 of 12) -15578 ENSMUSG00000055447.19 ENSMUSG00000055447 ENSMUST00000229104 Cd47 protein_coding Interval_165795 chr9 53218673 53218868 + 0 NA intron (ENSMUSG00000053289.8, intron 9 of 17) protein_coding-intron (ENSMUSG00000053289.8, intron 9 of 17) 29283 ENSMUSG00000053289.8 ENSMUSG00000053289 ENSMUST00000065630 Ddx10 protein_coding Interval_23974 chr11 29041042 29042102 + 0 NA Intergenic Intergenic 84848 ENSMUSG00000081695.1 ENSMUSG00000081695 ENSMUST00000121462 Rpsa-ps5 processed_pseudogene Interval_46813 chr13 71050637 71051514 + 0 NA Intergenic Intergenic 20651 ENSMUSG00000102303.1 ENSMUSG00000102303 ENSMUST00000194509 Gm38191 TEC Interval_112954 chr4 46404875 46405084 + 0 NA promoter-TSS (ENSMUSG00000028332.13) protein_coding-promoter-TSS (ENSMUSG00000028332.13) -743 ENSMUSG00000028332.13 ENSMUSG00000028332 ENSMUST00000071096 Hemgn protein_coding Interval_2852 chr1 46514535 46515316 + 0 NA intron (ENSMUSG00000101337.6, intron 11 of 64) protein_coding-intron (ENSMUSG00000101337.6, intron 11 of 64) 100423 ENSMUSG00000101262.1 ENSMUSG00000101262 ENSMUST00000188705 Gm8326 processed_pseudogene Interval_160558 chr8 110648627 110649024 + 0 NA intron (ENSMUSG00000010936.11, intron 1 of 6) protein_coding-intron (ENSMUSG00000010936.11, intron 10 of 18) 3245 ENSMUSG00000010936.11 ENSMUSG00000010936 ENSMUST00000213015 Vac14 protein_coding Interval_90542 chr2 31060137 31061457 + 0 NA intron (ENSMUSG00000075415.13, intron 4 of 5) protein_coding-intron (ENSMUSG00000075415.13, intron 6 of 13) 55515 ENSMUSG00000075415.13 ENSMUSG00000075415 ENSMUST00000136085 Fnbp1 protein_coding Interval_82393 chr18 73662152 73662790 + 0 NA intron (ENSMUSG00000024515.13, intron 1 of 7) protein_coding-intron (ENSMUSG00000024515.13, intron 5 of 11) -4733 ENSMUSG00000118185.1 ENSMUSG00000118185 ENSMUST00000235991 Gm50126 processed_pseudogene Interval_155222 chr8 27908283 27910155 + 0 NA Intergenic Intergenic -148108 ENSMUSG00000064882.1 ENSMUSG00000064882 ENSMUST00000082948 Gm24202 snRNA Interval_19777 chr10 108718579 108718903 + 0 NA intron (ENSMUSG00000035864.14, intron 3 of 7) protein_coding-intron (ENSMUSG00000035864.14, intron 3 of 10) -18581 ENSMUSG00000112039.1 ENSMUSG00000112039 ENSMUST00000218023 Gm5136 protein_coding Interval_118165 chr4 129310791 129311042 + 0 NA intron (ENSMUSG00000057236.10, intron 11 of 11) protein_coding-intron (ENSMUSG00000057236.10, intron 11 of 11) 23285 ENSMUSG00000001333.9 ENSMUSG00000001333 ENSMUST00000146448 Sync protein_coding Interval_164324 chr9 35358333 35358557 + 0 NA Intergenic Intergenic 4668 ENSMUSG00000103259.1 ENSMUSG00000103259 ENSMUST00000193707 2610105M22Rik TEC Interval_39272 chr12 86365193 86366436 + 0 NA intron (ENSMUSG00000021255.17, intron 1 of 6) protein_coding-intron (ENSMUSG00000021255.17, intron 1 of 6) 17837 ENSMUSG00000113230.1 ENSMUSG00000113230 ENSMUST00000221001 Gm48101 processed_pseudogene Interval_4915 chr1 82444636 82445022 + 0 NA exon (ENSMUSG00000026142.15, exon 7 of 7) protein_coding-exon (ENSMUSG00000026142.15, exon 7 of 7) -42083 ENSMUSG00000100786.1 ENSMUSG00000100786 ENSMUST00000187929 Gm28940 antisense Interval_94917 chr2 101715535 101717276 + 0 NA TTS (ENSMUSG00000032841.15) protein_coding-TTS (ENSMUSG00000032841.15) 32190 ENSMUSG00000027164.8 ENSMUSG00000027164 ENSMUST00000144063 Traf6 protein_coding Interval_55026 chr14 77149757 77150692 + 0 NA Intergenic Intergenic 102090 ENSMUSG00000063556.5 ENSMUSG00000063556 ENSMUST00000099431 Gm10132 processed_pseudogene Interval_78148 chr18 9355684 9356716 + 0 NA intron (ENSMUSG00000024286.8, intron 2 of 8) protein_coding-intron (ENSMUSG00000024286.8, intron 3 of 9) 51565 ENSMUSG00000117644.1 ENSMUSG00000117644 ENSMUST00000234891 Gm50053 processed_pseudogene Interval_109107 chr3 135836974 135837299 + 0 NA intron (ENSMUSG00000106306.4, intron 2 of 3) protein_coding-intron (ENSMUSG00000053897.15, intron 1 of 7) 3133 ENSMUSG00000106306.4 ENSMUSG00000106306 ENSMUST00000199058 4933401H06Rik processed_transcript Interval_22768 chr11 15142246 15142523 + 0 NA Intergenic Intergenic 93226 ENSMUSG00000084183.1 ENSMUSG00000084183 ENSMUST00000121361 Gm12009 processed_pseudogene Interval_151185 chr7 119078492 119078863 + 0 NA Intergenic Intergenic -94033 ENSMUSG00000008734.9 ENSMUSG00000008734 ENSMUST00000207614 Gprc5b protein_coding Interval_78172 chr18 9725783 9726824 + 0 NA TTS (ENSMUSG00000091285.2) processed_pseudogene-TTS (ENSMUSG00000091285.2) 367 ENSMUSG00000091285.2 ENSMUSG00000091285 ENSMUST00000171339 Gm17430 processed_pseudogene Interval_84692 chr19 15339766 15340675 + 0 NA Intergenic Intergenic -339784 ENSMUSG00000094850.1 ENSMUSG00000094850 ENSMUST00000083389 Gm24319 snRNA Interval_5555 chr1 89781597 89782079 + 0 NA intron (ENSMUSG00000055013.16, intron 12 of 17) protein_coding-intron (ENSMUSG00000055013.16, intron 12 of 17) -7325 ENSMUSG00000055013.16 ENSMUSG00000055013 ENSMUST00000212924 Agap1 protein_coding Interval_81476 chr18 60994597 60995524 + 0 NA TTS (ENSMUSG00000052026.8) protein_coding-TTS (ENSMUSG00000052026.8) 19146 ENSMUSG00000052026.8 ENSMUSG00000052026 ENSMUST00000236893 Slc6a7 protein_coding Interval_37737 chr12 71508389 71509243 + 0 NA intron (ENSMUSG00000113630.1, intron 1 of 5) lincRNA-intron (ENSMUSG00000113630.1, intron 1 of 5) 20531 ENSMUSG00000113630.1 ENSMUSG00000113630 ENSMUST00000220948 4930404H11Rik lincRNA Interval_82205 chr18 69040597 69041512 + 0 NA Intergenic Intergenic -18781 ENSMUSG00000098366.1 ENSMUSG00000098366 ENSMUST00000184434 Mir145b miRNA Interval_147001 chr7 57687580 57688216 + 0 NA intron (ENSMUSG00000033676.13, intron 3 of 8) protein_coding-intron (ENSMUSG00000033676.13, intron 3 of 8) 31263 ENSMUSG00000109439.1 ENSMUSG00000109439 ENSMUST00000209070 Gm44853 processed_pseudogene Interval_114386 chr4 74553793 74554443 + 0 NA Intergenic Intergenic -81096 ENSMUSG00000099334.1 ENSMUSG00000099334 ENSMUST00000178125 Gm26379 snoRNA Interval_88677 chr2 9633156 9634013 + 0 NA Intergenic Intergenic -2243 ENSMUSG00000104276.1 ENSMUSG00000104276 ENSMUST00000191950 Gm37866 TEC Interval_49815 chr13 116365440 116365647 + 0 NA Intergenic Intergenic -3849 ENSMUSG00000114451.1 ENSMUSG00000114451 ENSMUST00000225190 Gm47912 processed_pseudogene Interval_98952 chr2 156278354 156279422 + 0 NA intron (ENSMUSG00000038116.16, intron 8 of 16) protein_coding-intron (ENSMUSG00000038116.16, intron 9 of 17) 33859 ENSMUSG00000046229.10 ENSMUSG00000046229 ENSMUST00000079125 Scand1 protein_coding Interval_150071 chr7 105611164 105611999 + 0 NA TTS (ENSMUSG00000036989.16) protein_coding-TTS (ENSMUSG00000036989.16) 275 ENSMUSG00000036989.16 ENSMUSG00000036989 ENSMUST00000140882 Trim3 protein_coding Interval_653 chr1 9601470 9601925 + 0 NA exon (ENSMUSG00000079671.8, exon 3 of 3) processed_transcript-intron (ENSMUSG00000079671.8, intron 3 of 3) 498 ENSMUSG00000067879.3 ENSMUSG00000067879 ENSMUST00000088666 Vxn protein_coding Interval_7866 chr1 134260130 134260372 + 0 NA Intergenic Intergenic 20740 ENSMUSG00000096676.1 ENSMUSG00000096676 ENSMUST00000122560 Gm24517 snRNA Interval_136357 chr6 53714464 53715297 + 0 NA Intergenic Intergenic 47110 ENSMUSG00000108004.1 ENSMUSG00000108004 ENSMUST00000204451 Gm44080 TEC Interval_80142 chr18 37824895 37826820 + 0 NA intron (ENSMUSG00000103793.1, intron 2 of 3) protein_coding-intron (ENSMUSG00000103088.1, intron 2 of 3) 1120 ENSMUSG00000102828.5 ENSMUSG00000102828 ENSMUST00000194980 Gm38182 processed_transcript Interval_72299 chr17 29031746 29033074 + 0 NA promoter-TSS (ENSMUSG00000071172.13) protein_coding-promoter-TSS (ENSMUSG00000071172.13) 158 ENSMUSG00000086154.2 ENSMUSG00000086154 ENSMUST00000233751 Gm16196 bidirectional_promoter_lncRNA Interval_18953 chr10 93334925 93336185 + 0 NA exon (ENSMUSG00000110647.2, exon 1 of 3) lincRNA-exon (ENSMUSG00000110647.2, exon 1 of 3) 162 ENSMUSG00000110647.2 ENSMUSG00000110647 ENSMUST00000212186 Gm17745 lincRNA Interval_101634 chr3 8304504 8305345 + 0 NA Intergenic Intergenic -22607 ENSMUSG00000103921.1 ENSMUSG00000103921 ENSMUST00000195307 Gm5841 processed_pseudogene Interval_1668 chr1 30900674 30901009 + 0 NA Intergenic Intergenic -32303 ENSMUSG00000104315.1 ENSMUSG00000104315 ENSMUST00000192050 Gm37906 TEC Interval_72406 chr17 29637994 29638333 + 0 NA intron (ENSMUSG00000098374.1, intron 7 of 27) protein_coding-intron (ENSMUSG00000090083.11, intron 7 of 7) 4645 ENSMUSG00000090083.11 ENSMUSG00000090083 ENSMUST00000172800 Rnf8 protein_coding Interval_35990 chr12 33157707 33158670 + 0 NA intron (ENSMUSG00000020564.17, intron 2 of 12) protein_coding-intron (ENSMUSG00000020564.17, intron 1 of 2) -10592 ENSMUSG00000052125.16 ENSMUSG00000052125 ENSMUST00000172344 F730043M19Rik bidirectional_promoter_lncRNA Interval_169560 chr9 99139543 99140807 + 0 NA promoter-TSS (ENSMUSG00000032462.14) protein_coding-promoter-TSS (ENSMUSG00000032462.14) -250 ENSMUSG00000032462.14 ENSMUSG00000032462 ENSMUST00000124723 Pik3cb protein_coding Interval_148588 chr7 82865580 82868045 + 0 NA promoter-TSS (ENSMUSG00000057706.7) protein_coding-promoter-TSS (ENSMUSG00000057706.7) 262 ENSMUSG00000109383.1 ENSMUSG00000109383 ENSMUST00000209046 Gm36584 lincRNA Interval_20051 chr10 112743719 112744704 + 0 NA intron (ENSMUSG00000100314.6, intron 2 of 3) lincRNA-intron (ENSMUSG00000100314.6, intron 2 of 3) 17285 ENSMUSG00000100314.6 ENSMUSG00000100314 ENSMUST00000189116 1700010J16Rik lincRNA Interval_78337 chr18 12044999 12045351 + 0 NA intron (ENSMUSG00000049411.15, intron 13 of 15) protein_coding-intron (ENSMUSG00000049411.15, intron 10 of 12) 76305 ENSMUSG00000049411.15 ENSMUSG00000049411 ENSMUST00000234833 Tmem241 protein_coding Interval_1287 chr1 19211424 19211636 + 0 NA promoter-TSS (ENSMUSG00000025927.13) protein_coding-promoter-TSS (ENSMUSG00000025927.13) -776 ENSMUSG00000025927.13 ENSMUSG00000025927 ENSMUST00000186972 Tfap2b protein_coding Interval_117578 chr4 124801845 124803043 + 0 NA promoter-TSS (ENSMUSG00000028890.13) protein_coding-promoter-TSS (ENSMUSG00000028890.13) -234 ENSMUSG00000028890.13 ENSMUSG00000028890 ENSMUST00000175875 Mtf1 protein_coding Interval_78160 chr18 9532887 9533593 + 0 NA Intergenic Intergenic -5018 ENSMUSG00000117435.1 ENSMUSG00000117435 ENSMUST00000234348 Gm7532 processed_pseudogene Interval_105190 chr3 83701018 83701857 + 0 NA promoter-TSS (ENSMUSG00000088597.1) snRNA-promoter-TSS (ENSMUSG00000088597.1) -815 ENSMUSG00000088597.1 ENSMUSG00000088597 ENSMUST00000157972 Gm24584 snRNA Interval_109477 chr3 142789106 142789342 + 0 NA Intergenic Intergenic -5878 ENSMUSG00000087795.1 ENSMUSG00000087795 ENSMUST00000157170 Gm25965 snoRNA Interval_164055 chr9 31193446 31194700 + 0 NA intron (ENSMUSG00000031996.17, intron 1 of 15) protein_coding-intron (ENSMUSG00000031996.17, intron 1 of 16) -32751 ENSMUSG00000031996.17 ENSMUSG00000031996 ENSMUST00000213273 Aplp2 protein_coding Interval_105995 chr3 90501846 90502181 + 0 NA TTS (ENSMUSG00000001017.15) protein_coding-TTS (ENSMUSG00000001017.15) 7463 ENSMUSG00000001017.15 ENSMUSG00000001017 ENSMUST00000131868 Chtop protein_coding Interval_127603 chr5 105722802 105724069 + 0 NA intron (ENSMUSG00000046079.16, intron 1 of 1) protein_coding-intron (ENSMUSG00000046079.16, intron 1 of 2) -7954 ENSMUSG00000046079.16 ENSMUSG00000046079 ENSMUST00000134605 Lrrc8d protein_coding Interval_91603 chr2 44509648 44509947 + 0 NA Intergenic Intergenic 80862 ENSMUSG00000088124.1 ENSMUSG00000088124 ENSMUST00000157499 Gm22867 snRNA Interval_147408 chr7 66523822 66524215 + 0 NA Intergenic Intergenic 41607 ENSMUSG00000109330.1 ENSMUSG00000109330 ENSMUST00000208155 Gm44754 processed_pseudogene Interval_117147 chr4 120032176 120033395 + 0 NA promoter-TSS (ENSMUSG00000028634.17) protein_coding-promoter-TSS (ENSMUSG00000028634.17) 19 ENSMUSG00000028634.17 ENSMUSG00000028634 ENSMUST00000166542 Hivep3 protein_coding Interval_55586 chr14 93923152 93923383 + 0 NA Intergenic Intergenic -32598 ENSMUSG00000055421.8 ENSMUSG00000055421 ENSMUST00000194056 Pcdh9 protein_coding Interval_151280 chr7 120643000 120643435 + 0 NA TTS (ENSMUSG00000030884.12) protein_coding-TTS (ENSMUSG00000030884.12) 7954 ENSMUSG00000030884.12 ENSMUSG00000030884 ENSMUST00000131191 Uqcrc2 protein_coding Interval_104321 chr3 63369434 63369833 + 0 NA intron (ENSMUSG00000027820.12, intron 22 of 22) protein_coding-intron (ENSMUSG00000027820.12, intron 22 of 22) -69618 ENSMUSG00000104336.1 ENSMUSG00000104336 ENSMUST00000192500 Gm34240 lincRNA Interval_163679 chr9 24146404 24147515 + 0 NA intron (ENSMUSG00000043659.11, intron 3 of 5) protein_coding-intron (ENSMUSG00000043659.11, intron 3 of 9) -55057 ENSMUSG00000111135.1 ENSMUSG00000111135 ENSMUST00000213615 Gm47670 processed_pseudogene Interval_67432 chr16 48608109 48608913 + 0 NA intron (ENSMUSG00000022652.7, intron 1 of 5) protein_coding-intron (ENSMUSG00000022652.7, intron 20 of 26) 128879 ENSMUSG00000022652.7 ENSMUSG00000022652 ENSMUST00000232195 Morc1 protein_coding Interval_47919 chr13 94385052 94385255 + 0 NA intron (ENSMUSG00000021686.6, intron 1 of 26) protein_coding-intron (ENSMUSG00000021686.6, intron 1 of 26) -26230 ENSMUSG00000042857.3 ENSMUSG00000042857 ENSMUST00000221110 Gm9776 bidirectional_promoter_lncRNA Interval_167714 chr9 72248582 72248817 + 0 NA Intergenic Intergenic 8440 ENSMUSG00000089530.1 ENSMUSG00000089530 ENSMUST00000158905 Gm25163 snRNA Interval_117075 chr4 119378053 119378645 + 0 NA intron (ENSMUSG00000028637.16, intron 1 of 2) protein_coding-intron (ENSMUSG00000028637.16, intron 1 of 6) -4596 ENSMUSG00000028637.16 ENSMUSG00000028637 ENSMUST00000238559 Ccdc30 protein_coding Interval_12617 chr10 3927149 3927559 + 0 NA intron (ENSMUSG00000040624.18, intron 4 of 15) protein_coding-intron (ENSMUSG00000040624.18, intron 4 of 15) 7523 ENSMUSG00000089392.1 ENSMUSG00000089392 ENSMUST00000158767 Gm23023 rRNA Interval_127959 chr5 109850997 109851780 + 0 NA Intergenic Intergenic -17243 ENSMUSG00000105044.1 ENSMUSG00000105044 ENSMUST00000197379 Gm10416 TEC Interval_26937 chr11 61693650 61694237 + 0 NA intron (ENSMUSG00000042377.8, intron 1 of 4) protein_coding-intron (ENSMUSG00000042371.12, intron 10 of 15) 9524 ENSMUSG00000042377.8 ENSMUSG00000042377 ENSMUST00000093019 Fam83g protein_coding Interval_168383 chr9 79872959 79873271 + 0 NA intron (ENSMUSG00000034898.17, intron 2 of 6) protein_coding-intron (ENSMUSG00000034898.17, intron 2 of 5) -34728 ENSMUSG00000092565.1 ENSMUSG00000092565 ENSMUST00000174028 Gm20477 processed_pseudogene Interval_46436 chr13 65252698 65252984 + 0 NA exon (ENSMUSG00000113238.1, exon 2 of 2) lincRNA-exon (ENSMUSG00000113238.1, exon 2 of 2) 862 ENSMUSG00000113238.1 ENSMUSG00000113238 ENSMUST00000223117 Gm47251 lincRNA Interval_91142 chr2 35424125 35424883 + 0 NA intron (ENSMUSG00000035778.17, intron 2 of 2) protein_coding-intron (ENSMUSG00000035778.17, intron 1 of 5) -1177 ENSMUSG00000035778.17 ENSMUSG00000035778 ENSMUST00000149442 Ggta1 protein_coding Interval_115528 chr4 100201578 100202131 + 0 NA intron (ENSMUSG00000035305.5, intron 1 of 8) protein_coding-intron (ENSMUSG00000035305.5, intron 1 of 8) 82233 ENSMUSG00000086385.1 ENSMUSG00000086385 ENSMUST00000134206 Gm12701 sense_intronic Interval_19038 chr10 93990199 93991288 + 0 NA intron (ENSMUSG00000036099.16, intron 7 of 8) protein_coding-intron (ENSMUSG00000036099.16, intron 6 of 11) -26880 ENSMUSG00000065607.1 ENSMUSG00000065607 ENSMUST00000083673 Mir331 miRNA Interval_16765 chr10 68028477 68029814 + 0 NA intron (ENSMUSG00000037846.18, intron 9 of 14) protein_coding-intron (ENSMUSG00000037846.18, intron 9 of 14) -2519 ENSMUSG00000086838.1 ENSMUSG00000086838 ENSMUST00000143555 Gm16212 antisense Interval_149608 chr7 100014211 100014463 + 0 NA intron (ENSMUSG00000030732.13, intron 1 of 10) protein_coding-intron (ENSMUSG00000030732.13, intron 1 of 10) 8165 ENSMUSG00000030732.13 ENSMUSG00000030732 ENSMUST00000144808 Chrdl2 protein_coding Interval_91720 chr2 48834011 48834297 + 0 NA intron (ENSMUSG00000052155.5, intron 1 of 10) protein_coding-intron (ENSMUSG00000052155.5, intron 1 of 10) -23599 ENSMUSG00000082114.2 ENSMUSG00000082114 ENSMUST00000121234 Gm13489 processed_pseudogene Interval_79465 chr18 32103132 32103690 + 0 NA exon (ENSMUSG00000024384.4, exon 14 of 14) protein_coding-exon (ENSMUSG00000024384.4, exon 14 of 14) 8896 ENSMUSG00000117481.1 ENSMUSG00000117481 ENSMUST00000235012 Gm49966 processed_pseudogene Interval_27101 chr11 62903991 62904351 + 0 NA intron (ENSMUSG00000014177.10, intron 2 of 2) protein_coding-intron (ENSMUSG00000014177.10, intron 2 of 2) 17421 ENSMUSG00000086677.1 ENSMUSG00000086677 ENSMUST00000148598 Tvp23bos antisense Interval_5915 chr1 93205449 93205778 + 0 NA intron (ENSMUSG00000084989.3, intron 19 of 31) protein_coding-intron (ENSMUSG00000084989.3, intron 19 of 31) -30238 ENSMUSG00000047793.13 ENSMUSG00000047793 ENSMUST00000165883 Sned1 protein_coding Interval_151190 chr7 119231261 119231799 + 0 NA Intergenic Intergenic -46927 ENSMUSG00000066197.5 ENSMUSG00000066197 ENSMUST00000084650 Gpr139 protein_coding Interval_124005 chr5 37118202 37118660 + 0 NA TTS (ENSMUSG00000113373.1) protein_coding-TTS (ENSMUSG00000113373.1) 4647 ENSMUSG00000113373.1 ENSMUSG00000113373 ENSMUST00000212997 Jakmip1 protein_coding Interval_64281 chr16 10205099 10206428 + 0 NA intron (ENSMUSG00000039200.16, intron 3 of 5) protein_coding-intron (ENSMUSG00000039200.16, intron 3 of 10) -7043 ENSMUSG00000039200.16 ENSMUSG00000039200 ENSMUST00000230872 Atf7ip2 protein_coding Interval_122303 chr5 21061635 21062105 + 0 NA Intergenic Intergenic -5973 ENSMUSG00000028771.13 ENSMUSG00000028771 ENSMUST00000140057 Ptpn12 protein_coding Interval_159936 chr8 105275536 105277054 + 0 NA TTS (ENSMUSG00000033249.10) protein_coding-TTS (ENSMUSG00000033249.10) 155 ENSMUSG00000014776.7 ENSMUSG00000014776 ENSMUST00000014920 Nol3 protein_coding Interval_78009 chr18 6645097 6645268 + 0 NA Intergenic Intergenic 41553 ENSMUSG00000039540.9 ENSMUSG00000039540 ENSMUST00000234337 4921524L21Rik protein_coding Interval_160730 chr8 111868700 111869225 + 0 NA intron (ENSMUSG00000031953.2, intron 2 of 2) protein_coding-intron (ENSMUSG00000031953.2, intron 2 of 2) 7788 ENSMUSG00000031953.2 ENSMUSG00000031953 ENSMUST00000034431 Tmem170 protein_coding Interval_164089 chr9 31410071 31410576 + 0 NA intron (ENSMUSG00000042185.14, intron 20 of 25) protein_coding-intron (ENSMUSG00000042185.14, intron 20 of 25) 14172 ENSMUSG00000042185.14 ENSMUSG00000042185 ENSMUST00000143558 Nfrkb protein_coding Interval_122158 chr5 18413536 18414528 + 0 NA Intergenic Intergenic -53677 ENSMUSG00000057614.6 ENSMUSG00000057614 ENSMUST00000074694 Gnai1 protein_coding Interval_76955 chr17 85149288 85149518 + 0 NA intron (ENSMUSG00000071037.6, intron 3 of 10) protein_coding-intron (ENSMUSG00000071037.6, intron 3 of 10) 58797 ENSMUSG00000071037.6 ENSMUSG00000071037 ENSMUST00000234501 Camkmt protein_coding Interval_47751 chr13 92303747 92304143 + 0 NA intron (ENSMUSG00000014850.15, intron 11 of 24) protein_coding-intron (ENSMUSG00000014850.15, intron 10 of 23) -2035 ENSMUSG00000100622.1 ENSMUSG00000100622 ENSMUST00000188317 Gm20379 protein_coding Interval_60413 chr15 73608895 73609147 + 0 NA intron (ENSMUSG00000079020.9, intron 1 of 1) protein_coding-intron (ENSMUSG00000079020.9, intron 1 of 7) -20059 ENSMUSG00000079020.9 ENSMUSG00000079020 ENSMUST00000150409 Slc45a4 protein_coding Interval_131419 chr5 137058613 137059569 + 0 NA Intergenic Intergenic 13177 ENSMUSG00000037411.10 ENSMUSG00000037411 ENSMUST00000199832 Serpine1 protein_coding Interval_137187 chr6 69405695 69406576 + 0 NA Intergenic Intergenic -3371 ENSMUSG00000106216.1 ENSMUSG00000106216 ENSMUST00000198255 Igkv13-61-1 IG_V_pseudogene Interval_90654 chr2 31707865 31708858 + 0 NA intron (ENSMUSG00000026842.16, intron 2 of 11) protein_coding-intron (ENSMUSG00000026842.16, intron 1 of 10) 19243 ENSMUSG00000118600.1 ENSMUSG00000118600 ENSMUST00000239231 AL929275.1 protein_coding Interval_73400 chr17 36995244 36996054 + 0 NA Intergenic Intergenic -6461 ENSMUSG00000024459.18 ENSMUSG00000024459 ENSMUST00000113667 H2-M5 protein_coding Interval_45968 chr13 59701599 59701812 + 0 NA TTS (ENSMUSG00000050876.9) protein_coding-TTS (ENSMUSG00000050876.9) 4476 ENSMUSG00000050876.9 ENSMUSG00000050876 ENSMUST00000225362 Spata31d1a protein_coding Interval_163023 chr9 14614039 14615569 + 0 NA promoter-TSS (ENSMUSG00000013076.17) protein_coding-promoter-TSS (ENSMUSG00000013076.17) 4761 ENSMUSG00000111540.1 ENSMUSG00000111540 ENSMUST00000216646 4930584E12Rik TEC Interval_161276 chr8 119446251 119447634 + 0 NA TTS (ENSMUSG00000074063.10) protein_coding-TTS (ENSMUSG00000074063.10) -5490 ENSMUSG00000031837.14 ENSMUSG00000031837 ENSMUST00000148328 Necab2 protein_coding Interval_32440 chr11 107553885 107554232 + 0 NA intron (ENSMUSG00000020721.16, intron 2 of 31) protein_coding-intron (ENSMUSG00000020721.16, intron 2 of 31) -5685 ENSMUSG00000059706.4 ENSMUSG00000059706 ENSMUST00000147445 A830035A12Rik processed_transcript Interval_22660 chr11 12622626 12622911 + 0 NA Intergenic Intergenic -54165 ENSMUSG00000089034.1 ENSMUSG00000089034 ENSMUST00000158409 Gm22156 snoRNA Interval_1419 chr1 22030348 22030864 + 0 NA promoter-TSS (ENSMUSG00000099692.1) processed_pseudogene-promoter-TSS (ENSMUSG00000099692.1) 9 ENSMUSG00000099692.1 ENSMUSG00000099692 ENSMUST00000189850 Gm5696 processed_pseudogene Interval_47189 chr13 77548251 77548578 + 0 NA intron (ENSMUSG00000071252.6, intron 19 of 19) protein_coding-intron (ENSMUSG00000071252.6, intron 19 of 19) 5959 ENSMUSG00000114778.1 ENSMUSG00000114778 ENSMUST00000223622 Gm9634 processed_pseudogene Interval_46418 chr13 65034996 65035866 + 0 NA exon (ENSMUSG00000074849.2, exon 4 of 4) protein_coding-exon (ENSMUSG00000074849.2, exon 4 of 4) 2373 ENSMUSG00000074849.2 ENSMUSG00000074849 ENSMUST00000099427 Spata31d1c protein_coding Interval_29140 chr11 80592710 80593284 + 0 NA intron (ENSMUSG00000035441.14, intron 18 of 20) protein_coding-intron (ENSMUSG00000035441.14, intron 18 of 21) -83891 ENSMUSG00000085078.1 ENSMUSG00000085078 ENSMUST00000133400 C030013C21Rik sense_intronic Interval_12046 chr1 189073928 189074201 + 0 NA Intergenic Intergenic 5640 ENSMUSG00000104464.1 ENSMUSG00000104464 ENSMUST00000192327 Gm18698 processed_pseudogene Interval_138780 chr6 91806468 91807891 + 0 NA intron (ENSMUSG00000030098.15, intron 1 of 23) protein_coding-intron (ENSMUSG00000030098.15, intron 1 of 22) -10919 ENSMUSG00000030098.15 ENSMUSG00000030098 ENSMUST00000205964 Grip2 protein_coding Interval_99584 chr2 163360905 163361995 + 0 NA intron (ENSMUSG00000017817.11, intron 3 of 6) protein_coding-intron (ENSMUSG00000017817.11, intron 2 of 5) 36543 ENSMUSG00000017817.11 ENSMUSG00000017817 ENSMUST00000109425 Jph2 protein_coding Interval_84162 chr19 7668272 7669018 + 0 NA exon (ENSMUSG00000024761.3, exon 1 of 1) processed_pseudogene-exon (ENSMUSG00000024761.3, exon 1 of 1) 358 ENSMUSG00000024761.3 ENSMUSG00000024761 ENSMUST00000025669 Gm16437 processed_pseudogene Interval_149742 chr7 101069105 101069462 + 0 NA Intergenic Intergenic -7808 ENSMUSG00000109171.1 ENSMUSG00000109171 ENSMUST00000207053 Gm5735 processed_pseudogene Interval_111298 chr4 17852097 17854066 + 0 NA promoter-TSS (ENSMUSG00000028226.15) protein_coding-promoter-TSS (ENSMUSG00000028226.15) 188 ENSMUSG00000028226.15 ENSMUSG00000028226 ENSMUST00000139418 Mmp16 protein_coding Interval_139330 chr6 98956472 98956836 + 0 NA intron (ENSMUSG00000030067.17, intron 7 of 14) protein_coding-intron (ENSMUSG00000030067.17, intron 8 of 15) 87788 ENSMUSG00000030067.17 ENSMUSG00000030067 ENSMUST00000175838 Foxp1 protein_coding Interval_172793 chrX 49296209 49296619 + 0 NA Intergenic Intergenic 48823 ENSMUSG00000087369.1 ENSMUSG00000087369 ENSMUST00000144294 Gm14696 lincRNA Interval_24723 chr11 36238971 36239228 + 0 NA intron (ENSMUSG00000049336.16, intron 5 of 28) protein_coding-intron (ENSMUSG00000049336.16, intron 5 of 28) -38942 ENSMUSG00000086375.1 ENSMUSG00000086375 ENSMUST00000123278 Gm12127 antisense Interval_168376 chr9 79806493 79807320 + 0 NA intron (ENSMUSG00000034898.17, intron 6 of 6) protein_coding-intron (ENSMUSG00000034898.17, intron 6 of 6) 13265 ENSMUSG00000086918.1 ENSMUSG00000086918 ENSMUST00000151676 4930429F24Rik lincRNA Interval_132649 chr5 146947620 146949376 + 0 NA promoter-TSS (ENSMUSG00000016503.18) protein_coding-promoter-TSS (ENSMUSG00000016503.18) -159 ENSMUSG00000016503.18 ENSMUSG00000016503 ENSMUST00000133296 Gtf3a protein_coding Interval_37986 chr12 73608531 73608756 + 0 NA intron (ENSMUSG00000021108.18, intron 2 of 14) protein_coding-intron (ENSMUSG00000021108.18, intron 1 of 13) 23847 ENSMUSG00000021108.18 ENSMUSG00000021108 ENSMUST00000220898 Prkch protein_coding Interval_43980 chr13 38664888 38666021 + 0 NA Intergenic Intergenic -6444 ENSMUSG00000001707.8 ENSMUSG00000001707 ENSMUST00000224487 Eef1e1 protein_coding Interval_129310 chr5 118877327 118877613 + 0 NA promoter-TSS (ENSMUSG00000106708.1) lincRNA-promoter-TSS (ENSMUSG00000106708.1) -5 ENSMUSG00000106708.1 ENSMUSG00000106708 ENSMUST00000202790 Gm43782 lincRNA Interval_126630 chr5 91270702 91271273 + 0 NA intron (ENSMUSG00000107198.1, intron 4 of 5) lincRNA-intron (ENSMUSG00000107198.1, intron 4 of 5) 12434 ENSMUSG00000107198.1 ENSMUSG00000107198 ENSMUST00000200707 Gm19619 lincRNA Interval_66989 chr16 39061351 39062846 + 0 NA Intergenic Intergenic 126808 ENSMUSG00000116965.1 ENSMUSG00000116965 ENSMUST00000231748 Gm36742 lincRNA Interval_120043 chr4 141500218 141500878 + 0 NA intron (ENSMUSG00000040761.16, intron 1 of 1) protein_coding-intron (ENSMUSG00000040761.16, intron 3 of 14) -12236 ENSMUSG00000040761.16 ENSMUSG00000040761 ENSMUST00000152081 Spen protein_coding Interval_72330 chr17 29237303 29238923 + 0 NA promoter-TSS (ENSMUSG00000024008.16) protein_coding-promoter-TSS (ENSMUSG00000024008.16) 14590 ENSMUSG00000024007.15 ENSMUSG00000024007 ENSMUST00000129157 Ppil1 protein_coding Interval_120919 chr4 151630400 151630643 + 0 NA intron (ENSMUSG00000014592.21, intron 3 of 24) protein_coding-intron (ENSMUSG00000014592.21, intron 3 of 23) 231183 ENSMUSG00000014592.21 ENSMUSG00000014592 ENSMUST00000135780 Camta1 protein_coding Interval_102425 chr3 25411354 25412197 + 0 NA Intergenic Intergenic -134245 ENSMUSG00000087945.1 ENSMUSG00000087945 ENSMUST00000157320 Gm24250 rRNA Interval_93892 chr2 78129563 78130379 + 0 NA intron (ENSMUSG00000085431.7, intron 2 of 6) lincRNA-intron (ENSMUSG00000085431.7, intron 2 of 6) 78794 ENSMUSG00000085431.7 ENSMUSG00000085431 ENSMUST00000144728 4930440I19Rik lincRNA Interval_84640 chr19 14585879 14586402 + 0 NA intron (ENSMUSG00000024642.17, intron 2 of 3) protein_coding-intron (ENSMUSG00000024642.17, intron 4 of 19) 9399 ENSMUSG00000024642.17 ENSMUSG00000024642 ENSMUST00000235975 Tle4 protein_coding Interval_28810 chr11 78465558 78466655 + 0 NA intron (ENSMUSG00000020829.9, intron 1 of 3) protein_coding-intron (ENSMUSG00000020829.9, intron 1 of 4) -4120 ENSMUSG00000020829.9 ENSMUSG00000020829 ENSMUST00000180786 Slc46a1 protein_coding Interval_132486 chr5 145251346 145252007 + 0 NA Intergenic Intergenic 14701 ENSMUSG00000106188.1 ENSMUSG00000106188 ENSMUST00000198053 Gm9710 processed_pseudogene Interval_118268 chr4 129941361 129941879 + 0 NA intron (ENSMUSG00000028784.14, intron 1 of 13) protein_coding-intron (ENSMUSG00000028784.14, intron 1 of 13) -5927 ENSMUSG00000028784.14 ENSMUSG00000028784 ENSMUST00000128007 Spocd1 protein_coding Interval_72170 chr17 28395049 28395447 + 0 NA Intergenic Intergenic 31182 ENSMUSG00000117313.1 ENSMUSG00000117313 ENSMUST00000233201 Gm49838 sense_intronic Interval_95364 chr2 106958271 106958686 + 0 NA Intergenic Intergenic 10799 ENSMUSG00000027122.15 ENSMUSG00000027122 ENSMUST00000124598 Arl14ep protein_coding Interval_53111 chr14 54517099 54518103 + 0 NA promoter-TSS (ENSMUSG00000023110.12) protein_coding-promoter-TSS (ENSMUSG00000023110.12) -208 ENSMUSG00000023110.12 ENSMUSG00000023110 ENSMUST00000132801 Prmt5 protein_coding Interval_76158 chr17 75756977 75757454 + 0 NA Intergenic Intergenic -76622 ENSMUSG00000117587.1 ENSMUSG00000117587 ENSMUST00000235034 Gm50099 processed_pseudogene Interval_101636 chr3 8319064 8319268 + 0 NA Intergenic Intergenic -8365 ENSMUSG00000103921.1 ENSMUSG00000103921 ENSMUST00000195307 Gm5841 processed_pseudogene Interval_13532 chr10 19207586 19208597 + 0 NA Intergenic Intergenic 40853 ENSMUSG00000111052.1 ENSMUSG00000111052 ENSMUST00000216683 Gm20139 lincRNA Interval_144215 chr7 20031041 20031590 + 0 NA intron (ENSMUSG00000060508.16, intron 4 of 7) protein_coding-intron (ENSMUSG00000060508.16, intron 5 of 9) -21113 ENSMUSG00000070150.1 ENSMUSG00000070150 ENSMUST00000093641 n-R5s152 rRNA Interval_156996 chr8 64054730 64055187 + 0 NA intron (ENSMUSG00000053626.5, intron 13 of 20) protein_coding-intron (ENSMUSG00000053626.5, intron 13 of 20) -55331 ENSMUSG00000110305.1 ENSMUSG00000110305 ENSMUST00000210228 Gm45513 processed_pseudogene Interval_174055 chrX 133677513 133677866 + 0 NA intron (ENSMUSG00000051323.16, intron 2 of 4) protein_coding-intron (ENSMUSG00000051323.16, intron 2 of 4) 7302 ENSMUSG00000051323.16 ENSMUSG00000051323 ENSMUST00000193485 Pcdh19 protein_coding Interval_158239 chr8 80341445 80342004 + 0 NA Intergenic Intergenic 146525 ENSMUSG00000110294.1 ENSMUSG00000110294 ENSMUST00000211276 Gm45430 lincRNA Interval_111506 chr4 22263024 22263356 + 0 NA Intergenic Intergenic -12643 ENSMUSG00000083376.1 ENSMUSG00000083376 ENSMUST00000121463 Gm11882 processed_pseudogene Interval_141796 chr6 134579230 134580148 + 0 NA Intergenic Intergenic 27992 ENSMUSG00000107728.1 ENSMUSG00000107728 ENSMUST00000204630 Gm38910 lincRNA Interval_40820 chr12 108645447 108645733 + 0 NA intron (ENSMUSG00000021262.15, intron 2 of 14) protein_coding-intron (ENSMUSG00000021262.15, intron 1 of 13) -13030 ENSMUSG00000065436.1 ENSMUSG00000065436 ENSMUST00000083502 Mir342 miRNA Interval_25995 chr11 53389990 53390235 + 0 NA promoter-TSS (ENSMUSG00000064719.1) snRNA-promoter-TSS (ENSMUSG00000064719.1) -290 ENSMUSG00000064719.1 ENSMUSG00000064719 ENSMUST00000082785 Gm25930 snRNA Interval_153538 chr8 3301703 3302135 + 0 NA Intergenic Intergenic 42215 ENSMUSG00000086065.1 ENSMUSG00000086065 ENSMUST00000128662 Gm16180 antisense Interval_158266 chr8 80719941 80721166 + 0 NA intron (ENSMUSG00000031715.14, intron 10 of 19) protein_coding-intron (ENSMUSG00000031715.14, intron 10 of 23) 8584 ENSMUSG00000110142.1 ENSMUSG00000110142 ENSMUST00000209804 Gm45872 TEC Interval_91739 chr2 48960163 48960831 + 0 NA intron (ENSMUSG00000036792.12, intron 2 of 14) protein_coding-intron (ENSMUSG00000036792.12, intron 1 of 10) -50484 ENSMUSG00000026761.12 ENSMUSG00000026761 ENSMUST00000123271 Orc4 protein_coding Interval_124416 chr5 45745717 45745924 + 0 NA intron (ENSMUSG00000015882.18, intron 5 of 7) protein_coding-intron (ENSMUSG00000015882.18, intron 5 of 6) 15870 ENSMUSG00000104852.1 ENSMUSG00000104852 ENSMUST00000195925 Gm43201 TEC Interval_27043 chr11 62523120 62524543 + 0 NA TTS (ENSMUSG00000086636.1) antisense-TTS (ENSMUSG00000086636.1) 1090 ENSMUSG00000086636.1 ENSMUSG00000086636 ENSMUST00000143382 Gm12949 antisense Interval_152432 chr7 133005597 133006577 + 0 NA intron (ENSMUSG00000030970.16, intron 2 of 9) protein_coding-intron (ENSMUSG00000030970.16, intron 2 of 9) -22535 ENSMUSG00000085663.1 ENSMUSG00000085663 ENSMUST00000131085 Gm15718 antisense Interval_106919 chr3 101895602 101897224 + 0 NA intron (ENSMUSG00000033147.16, intron 4 of 8) protein_coding-intron (ENSMUSG00000033147.16, intron 4 of 11) 28036 ENSMUSG00000033147.16 ENSMUSG00000033147 ENSMUST00000182040 Slc22a15 protein_coding Interval_14434 chr10 33676936 33677183 + 0 NA Intergenic Intergenic -37833 ENSMUSG00000112656.1 ENSMUSG00000112656 ENSMUST00000217937 Gm47929 unprocessed_pseudogene Interval_163831 chr9 26999096 27000241 + 0 NA promoter-TSS (ENSMUSG00000035443.10) protein_coding-promoter-TSS (ENSMUSG00000035443.10) -197 ENSMUSG00000031969.16 ENSMUSG00000031969 ENSMUST00000138102 Acad8 protein_coding Interval_35569 chr12 24878463 24879440 + 0 NA intron (ENSMUSG00000020646.17, intron 2 of 4) protein_coding-intron (ENSMUSG00000020646.17, intron 1 of 9) 47320 ENSMUSG00000020646.17 ENSMUSG00000020646 ENSMUST00000222994 Mboat2 protein_coding Interval_85741 chr19 30219457 30220392 + 0 NA Intergenic Intergenic -13018 ENSMUSG00000024863.6 ENSMUSG00000024863 ENSMUST00000025797 Mbl2 protein_coding Interval_78775 chr18 20566549 20567655 + 0 NA intron (ENSMUSG00000044393.15, intron 1 of 6) protein_coding-intron (ENSMUSG00000044393.15, intron 1 of 14) 8856 ENSMUSG00000044393.15 ENSMUSG00000044393 ENSMUST00000121837 Dsg2 protein_coding Interval_149829 chr7 101850440 101852069 + 0 NA intron (ENSMUSG00000032725.10, intron 2 of 5) protein_coding-intron (ENSMUSG00000032725.10, intron 2 of 5) -1705 ENSMUSG00000110295.1 ENSMUSG00000110295 ENSMUST00000210220 Gm45319 processed_pseudogene Interval_35291 chr12 19928218 19928481 + 0 NA Intergenic Intergenic 22573 ENSMUSG00000113122.1 ENSMUSG00000113122 ENSMUST00000221262 Gm48644 unprocessed_pseudogene Interval_60182 chr15 67046816 67048369 + 0 NA Intergenic Intergenic 7534 ENSMUSG00000116289.1 ENSMUSG00000116289 ENSMUST00000230911 Gm31342 lincRNA Interval_10270 chr1 167733533 167733935 + 0 NA intron (ENSMUSG00000026686.14, intron 3 of 8) protein_coding-intron (ENSMUSG00000026686.14, intron 2 of 7) 44497 ENSMUSG00000026686.14 ENSMUSG00000026686 ENSMUST00000028003 Lmx1a protein_coding Interval_154652 chr8 22376582 22377376 + 0 NA exon (ENSMUSG00000031482.9, exon 7 of 7) protein_coding-exon (ENSMUSG00000031482.9, exon 7 of 7) 21565 ENSMUSG00000031482.9 ENSMUSG00000031482 ENSMUST00000210020 Slc25a15 protein_coding Interval_85398 chr19 25478771 25480052 + 0 NA Intergenic Intergenic -14426 ENSMUSG00000117720.1 ENSMUSG00000117720 ENSMUST00000238117 Gm5249 processed_pseudogene Interval_27322 chr11 66225779 66225967 + 0 NA intron (ENSMUSG00000053930.13, intron 2 of 4) protein_coding-intron (ENSMUSG00000053930.13, intron 2 of 4) 57838 ENSMUSG00000084967.1 ENSMUSG00000084967 ENSMUST00000144922 Gm12296 processed_transcript Interval_44691 chr13 47193007 47194290 + 0 NA promoter-TSS (ENSMUSG00000038068.15) protein_coding-promoter-TSS (ENSMUSG00000038068.15) -177 ENSMUSG00000038068.15 ENSMUSG00000038068 ENSMUST00000110111 Rnf144b protein_coding Interval_135466 chr6 39462991 39463690 + 0 NA TTS (ENSMUSG00000038456.9) protein_coding-TTS (ENSMUSG00000038456.9) 23116 ENSMUSG00000038456.9 ENSMUSG00000038456 ENSMUST00000154149 Dennd2a protein_coding Interval_169844 chr9 102436309 102436623 + 0 NA Intergenic Intergenic -50324 ENSMUSG00000111859.1 ENSMUSG00000111859 ENSMUST00000213941 Gm47983 TEC Interval_168403 chr9 80076570 80077043 + 0 NA intron (ENSMUSG00000034252.14, intron 1 of 1) protein_coding-intron (ENSMUSG00000034252.14, intron 1 of 22) -3050 ENSMUSG00000093779.1 ENSMUSG00000093779 ENSMUST00000175815 Gm20648 processed_pseudogene Interval_140585 chr6 119847478 119848844 + 0 NA promoter-TSS (ENSMUSG00000030172.15) protein_coding-promoter-TSS (ENSMUSG00000030172.15) -44759 ENSMUSG00000080719.1 ENSMUSG00000080719 ENSMUST00000121192 Gm15532 processed_pseudogene Interval_72042 chr17 27689217 27690282 + 0 NA intron (ENSMUSG00000040276.15, intron 1 of 9) protein_coding-intron (ENSMUSG00000040276.15, intron 1 of 9) 28600 ENSMUSG00000024215.14 ENSMUSG00000024215 ENSMUST00000138970 Spdef protein_coding Interval_155978 chr8 41389312 41390758 + 0 NA Intergenic Intergenic -15262 ENSMUSG00000031591.14 ENSMUSG00000031591 ENSMUST00000143057 Asah1 protein_coding Interval_167629 chr9 71331525 71332382 + 0 NA Intergenic Intergenic -52768 ENSMUSG00000111181.1 ENSMUSG00000111181 ENSMUST00000214975 Gm48124 processed_pseudogene Interval_166161 chr9 57174016 57174403 + 0 NA Intergenic Intergenic -1066 ENSMUSG00000100282.1 ENSMUSG00000100282 ENSMUST00000185243 1700041C23Rik lincRNA Interval_112176 chr4 35202440 35205551 + 0 NA intron (ENSMUSG00000028300.14, intron 1 of 1) protein_coding-intron (ENSMUSG00000028300.14, intron 7 of 9) -1020 ENSMUSG00000082762.1 ENSMUSG00000082762 ENSMUST00000121722 Gm12366 processed_pseudogene Interval_57503 chr15 11894040 11894702 + 0 NA intron (ENSMUSG00000022206.7, intron 2 of 7) protein_coding-intron (ENSMUSG00000022206.7, intron 2 of 7) 11303 ENSMUSG00000022206.7 ENSMUSG00000022206 ENSMUST00000226878 Npr3 protein_coding Interval_168827 chr9 87691013 87691334 + 0 NA Intergenic Intergenic -38112 ENSMUSG00000103710.1 ENSMUSG00000103710 ENSMUST00000192660 D030062O11Rik TEC Interval_85064 chr19 21946937 21947151 + 0 NA intron (ENSMUSG00000118237.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000118237.1, intron 1 of 2) 3845 ENSMUSG00000118237.1 ENSMUSG00000118237 ENSMUST00000237102 Gm50133 lincRNA Interval_28783 chr11 78291538 78291730 + 0 NA promoter-TSS (ENSMUSG00000037593.12) protein_coding-promoter-TSS (ENSMUSG00000037593.12) 767 ENSMUSG00000037593.12 ENSMUSG00000037593 ENSMUST00000136011 Rskr protein_coding Interval_168942 chr9 89298103 89298379 + 0 NA intron (ENSMUSG00000066442.17, intron 1 of 3) protein_coding-intron (ENSMUSG00000066442.17, intron 1 of 3) -34575 ENSMUSG00000066442.17 ENSMUSG00000066442 ENSMUST00000209568 Mthfs protein_coding Interval_1423 chr1 22105686 22105854 + 0 NA Intergenic Intergenic -75155 ENSMUSG00000099692.1 ENSMUSG00000099692 ENSMUST00000189850 Gm5696 processed_pseudogene Interval_45073 chr13 51862797 51863036 + 0 NA Intergenic Intergenic 16172 ENSMUSG00000021453.2 ENSMUSG00000021453 ENSMUST00000132480 Gadd45g protein_coding Interval_122363 chr5 21700942 21702056 + 0 NA promoter-TSS (ENSMUSG00000044968.16) protein_coding-promoter-TSS (ENSMUSG00000044968.16) -105 ENSMUSG00000044968.16 ENSMUSG00000044968 ENSMUST00000060899 Napepld protein_coding Interval_101435 chr2 181375907 181376192 + 0 NA intron (ENSMUSG00000027582.16, intron 1 of 5) protein_coding-intron (ENSMUSG00000027582.16, intron 2 of 6) -3590 ENSMUSG00000027582.16 ENSMUSG00000027582 ENSMUST00000156258 Zgpat protein_coding Interval_5306 chr1 87394645 87394831 + 0 NA promoter-TSS (ENSMUSG00000079436.3) protein_coding-promoter-TSS (ENSMUSG00000079436.3) -5349 ENSMUSG00000079436.3 ENSMUSG00000079436 ENSMUST00000174179 Kcnj13 protein_coding Interval_160955 chr8 116363292 116363586 + 0 NA Intergenic Intergenic 6378 ENSMUSG00000110709.1 ENSMUSG00000110709 ENSMUST00000212522 1700018P08Rik lincRNA Interval_112317 chr4 40322508 40322763 + 0 NA Intergenic Intergenic 9403 ENSMUSG00000087137.1 ENSMUSG00000087137 ENSMUST00000144039 4930509K18Rik lincRNA Interval_144258 chr7 24081273 24082955 + 0 NA exon (ENSMUSG00000057101.8, exon 1 of 5) protein_coding-exon (ENSMUSG00000057101.8, exon 1 of 5) 190 ENSMUSG00000057101.8 ENSMUSG00000057101 ENSMUST00000206482 Zfp180 protein_coding Interval_95567 chr2 112355161 112355593 + 0 NA promoter-TSS (ENSMUSG00000027130.15) protein_coding-promoter-TSS (ENSMUSG00000027130.15) 1175 ENSMUSG00000027130.15 ENSMUSG00000027130 ENSMUST00000137896 Slc12a6 protein_coding Interval_33792 chr11 118542651 118543337 + 0 NA intron (ENSMUSG00000025576.17, intron 3 of 13) protein_coding-intron (ENSMUSG00000025576.17, intron 4 of 14) -35641 ENSMUSG00000025576.17 ENSMUSG00000025576 ENSMUST00000134774 Rbfox3 protein_coding Interval_81237 chr18 56675104 56679026 + 0 NA Intergenic Intergenic 9287 ENSMUSG00000118275.1 ENSMUSG00000118275 ENSMUST00000235398 Gm50289 processed_pseudogene Interval_87874 chr19 56756320 56756971 + 0 NA Intergenic Intergenic -1299 ENSMUSG00000067063.1 ENSMUSG00000067063 ENSMUST00000086830 Gm6990 processed_pseudogene Interval_42172 chr13 9467403 9467650 + 0 NA intron (ENSMUSG00000048264.16, intron 1 of 36) protein_coding-intron (ENSMUSG00000048264.16, intron 1 of 38) 21626 ENSMUSG00000112948.1 ENSMUSG00000112948 ENSMUST00000223468 Gm48871 TEC Interval_161980 chr8 124247794 124248629 + 0 NA intron (ENSMUSG00000089704.9, intron 1 of 4) protein_coding-intron (ENSMUSG00000089704.9, intron 1 of 15) -47155 ENSMUSG00000089704.9 ENSMUSG00000089704 ENSMUST00000147911 Galnt2 protein_coding Interval_55082 chr14 77814129 77815641 + 0 NA Intergenic Intergenic -15917 ENSMUSG00000075512.5 ENSMUSG00000075512 ENSMUST00000228721 Gm1587 lincRNA Interval_136229 chr6 52177249 52177574 + 0 NA promoter-TSS (ENSMUSG00000056468.3) TEC-promoter-TSS (ENSMUSG00000056468.3) -87 ENSMUSG00000056468.3 ENSMUSG00000056468 ENSMUST00000070587 5730596B20Rik TEC Interval_56345 chr14 117920966 117921194 + 0 NA intron (ENSMUSG00000058571.11, intron 7 of 9) protein_coding-intron (ENSMUSG00000058571.11, intron 6 of 8) 32767 ENSMUSG00000098648.1 ENSMUSG00000098648 ENSMUST00000183564 Mir6239 miRNA Interval_166411 chr9 59259909 59262085 + 0 NA Intergenic Intergenic -25926 ENSMUSG00000110789.1 ENSMUSG00000110789 ENSMUST00000215275 Gm33053 lincRNA Interval_120047 chr4 141517930 141518193 + 0 NA intron (ENSMUSG00000040761.16, intron 2 of 15) protein_coding-intron (ENSMUSG00000040761.16, intron 2 of 14) -28128 ENSMUSG00000048406.5 ENSMUSG00000048406 ENSMUST00000049927 B330016D10Rik pseudogene Interval_26589 chr11 59080204 59080687 + 0 NA promoter-TSS (ENSMUSG00000061462.18) protein_coding-promoter-TSS (ENSMUSG00000061462.18) 55930 ENSMUSG00000061462.18 ENSMUSG00000061462 ENSMUST00000133040 Obscn protein_coding Interval_129453 chr5 120281050 120282584 + 0 NA Intergenic Intergenic -5909 ENSMUSG00000080412.1 ENSMUSG00000080412 ENSMUST00000116762 Gm26474 miRNA Interval_169732 chr9 100759224 100759557 + 0 NA intron (ENSMUSG00000037286.15, intron 5 of 8) protein_coding-intron (ENSMUSG00000037286.15, intron 5 of 8) 56177 ENSMUSG00000104272.1 ENSMUSG00000104272 ENSMUST00000195122 Gm38297 TEC Interval_75933 chr17 73173469 73174475 + 0 NA intron (ENSMUSG00000054469.14, intron 3 of 5) protein_coding-intron (ENSMUSG00000054469.14, intron 3 of 5) 17713 ENSMUSG00000081492.1 ENSMUSG00000081492 ENSMUST00000118042 Gm9311 processed_pseudogene Interval_111894 chr4 32312075 32313000 + 0 NA intron (ENSMUSG00000040270.16, intron 1 of 1) protein_coding-intron (ENSMUSG00000040270.16, intron 1 of 7) 60776 ENSMUSG00000087049.1 ENSMUSG00000087049 ENSMUST00000133451 Bach2it1 sense_intronic Interval_110525 chr4 3573666 3575447 + 0 NA promoter-TSS (ENSMUSG00000028233.6) protein_coding-promoter-TSS (ENSMUSG00000028233.6) 253 ENSMUSG00000028232.13 ENSMUSG00000028232 ENSMUST00000134451 Tmem68 protein_coding Interval_97959 chr2 146188271 146188488 + 0 NA intron (ENSMUSG00000037143.17, intron 9 of 10) protein_coding-intron (ENSMUSG00000037143.17, intron 25 of 26) -26234 ENSMUSG00000037143.17 ENSMUSG00000037143 ENSMUST00000167179 Cfap61 protein_coding Interval_165421 chr9 47708013 47709425 + 0 NA intron (ENSMUSG00000032076.20, intron 1 of 8) protein_coding-intron (ENSMUSG00000032076.20, intron 1 of 8) -62422 ENSMUSG00000110959.1 ENSMUSG00000110959 ENSMUST00000214736 Gm47198 TEC Interval_58945 chr15 40416823 40417459 + 0 NA Intergenic Intergenic 73881 ENSMUSG00000115820.1 ENSMUSG00000115820 ENSMUST00000226247 Gm41311 lincRNA Interval_72293 chr17 29012235 29012872 + 0 NA Intergenic Intergenic -8740 ENSMUSG00000087308.1 ENSMUSG00000087308 ENSMUST00000130607 Gm16195 lincRNA Interval_37644 chr12 70774547 70776978 + 0 NA intron (ENSMUSG00000113900.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000113900.1, intron 1 of 2) 49583 ENSMUSG00000113900.1 ENSMUSG00000113900 ENSMUST00000222338 Gm40437 lincRNA Interval_154756 chr8 23149332 23150435 + 0 NA promoter-TSS (ENSMUSG00000086741.1) antisense-promoter-TSS (ENSMUSG00000086741.1) -298 ENSMUSG00000086741.1 ENSMUSG00000086741 ENSMUST00000141930 Gm15816 antisense Interval_4083 chr1 67709041 67710102 + 0 NA Intergenic Intergenic -82910 ENSMUSG00000085075.1 ENSMUSG00000085075 ENSMUST00000147834 Gm15669 lincRNA Interval_163228 chr9 18721311 18723125 + 0 NA Intergenic Intergenic 41778 ENSMUSG00000054141.5 ENSMUSG00000054141 ENSMUST00000066997 Olfr24 protein_coding Interval_127772 chr5 107653310 107653558 + 0 NA intron (ENSMUSG00000033773.14, intron 11 of 12) protein_coding-intron (ENSMUSG00000033773.14, intron 11 of 12) -19584 ENSMUSG00000085900.1 ENSMUSG00000085900 ENSMUST00000149156 A930041C12Rik antisense Interval_79286 chr18 30045720 30046803 + 0 NA Intergenic Intergenic -220988 ENSMUSG00000117465.1 ENSMUSG00000117465 ENSMUST00000234467 Gm49980 lincRNA Interval_78456 chr18 12972086 12974560 + 0 NA promoter-TSS (ENSMUSG00000024423.6) protein_coding-promoter-TSS (ENSMUSG00000024423.6) 11824 ENSMUSG00000089129.1 ENSMUSG00000089129 ENSMUST00000158504 Gm26407 misc_RNA Interval_43766 chr13 36202719 36204031 + 0 NA intron (ENSMUSG00000021420.13, intron 2 of 7) protein_coding-intron (ENSMUSG00000021420.13, intron 1 of 6) -13652 ENSMUSG00000114407.1 ENSMUSG00000114407 ENSMUST00000223888 Gm48765 antisense Interval_18754 chr10 90024978 90025339 + 0 NA intron (ENSMUSG00000058589.14, intron 1 of 1) protein_coding-intron (ENSMUSG00000058589.14, intron 1 of 17) 109659 ENSMUSG00000112140.1 ENSMUSG00000112140 ENSMUST00000217774 Gm5780 processed_pseudogene Interval_108771 chr3 131178662 131179831 + 0 NA intron (ENSMUSG00000027985.14, intron 3 of 8) protein_coding-intron (ENSMUSG00000027985.14, intron 3 of 11) 42461 ENSMUSG00000104612.1 ENSMUSG00000104612 ENSMUST00000200349 Gm42449 TEC Interval_63761 chr15 103279164 103281214 + 0 NA intron (ENSMUSG00000060992.9, intron 1 of 7) protein_coding-intron (ENSMUSG00000060992.9, intron 1 of 8) -4936 ENSMUSG00000065560.1 ENSMUSG00000065560 ENSMUST00000083626 Mir148b miRNA Interval_117006 chr4 118973279 118973704 + 0 NA intron (ENSMUSG00000085895.1, intron 1 of 3) processed_transcript-intron (ENSMUSG00000085895.1, intron 1 of 3) 2194 ENSMUSG00000085895.1 ENSMUSG00000085895 ENSMUST00000145395 Gm12861 processed_transcript Interval_155132 chr8 26902301 26902637 + 0 NA Intergenic Intergenic -19774 ENSMUSG00000100335.2 ENSMUSG00000100335 ENSMUST00000210263 2310008N11Rik lincRNA Interval_146555 chr7 46806614 46807436 + 0 NA intron (ENSMUSG00000006599.13, intron 3 of 12) protein_coding-intron (ENSMUSG00000006599.13, intron 5 of 14) 10911 ENSMUSG00000006599.13 ENSMUSG00000006599 ENSMUST00000144708 Gtf2h1 protein_coding Interval_102159 chr3 18863727 18864460 + 0 NA Intergenic Intergenic 111016 ENSMUSG00000103264.1 ENSMUSG00000103264 ENSMUST00000194363 Gm30341 processed_pseudogene Interval_47702 chr13 91437142 91438501 + 0 NA Intergenic Intergenic -23349 ENSMUSG00000003992.15 ENSMUSG00000003992 ENSMUST00000137658 Ssbp2 protein_coding Interval_109416 chr3 142043243 142044009 + 0 NA intron (ENSMUSG00000052430.15, intron 1 of 11) protein_coding-intron (ENSMUSG00000052430.15, intron 2 of 11) -112118 ENSMUSG00000052430.15 ENSMUSG00000052430 ENSMUST00000106230 Bmpr1b protein_coding Interval_132 GL456378.1 8819 9032 + 0 NA NA NA NA NA Interval_116418 chr4 111681416 111681585 + 0 NA Intergenic Intergenic -38563 ENSMUSG00000034401.16 ENSMUSG00000034401 ENSMUST00000132802 Spata6 protein_coding Interval_14963 chr10 41489351 41490757 + 0 NA promoter-TSS (ENSMUSG00000078451.5) protein_coding-promoter-TSS (ENSMUSG00000078451.5) 43 ENSMUSG00000019822.12 ENSMUSG00000019822 ENSMUST00000147738 Smpd2 protein_coding Interval_26229 chr11 55296424 55296722 + 0 NA intron (ENSMUSG00000055333.14, intron 3 of 22) protein_coding-intron (ENSMUSG00000055333.14, intron 4 of 23) 15684 ENSMUSG00000055333.14 ENSMUSG00000055333 ENSMUST00000108864 Fat2 protein_coding Interval_123190 chr5 30506350 30507058 + 0 NA intron (ENSMUSG00000053194.2, intron 3 of 6) protein_coding-intron (ENSMUSG00000053194.2, intron 3 of 6) 7980 ENSMUSG00000088327.1 ENSMUSG00000088327 ENSMUST00000157702 Gm25666 snRNA Interval_119402 chr4 137479573 137480656 + 0 NA intron (ENSMUSG00000028763.18, intron 1 of 96) protein_coding-intron (ENSMUSG00000028763.18, intron 1 of 96) 26830 ENSMUSG00000041399.3 ENSMUSG00000041399 ENSMUST00000048893 1700013G24Rik protein_coding Interval_37042 chr12 56727476 56727670 + 0 NA intron (ENSMUSG00000035472.14, intron 4 of 4) protein_coding-intron (ENSMUSG00000035472.14, intron 7 of 9) -34609 ENSMUSG00000089894.2 ENSMUSG00000089894 ENSMUST00000159874 Gm15524 antisense Interval_83873 chr19 5268712 5268936 + 0 NA intron (ENSMUSG00000024855.10, intron 2 of 4) protein_coding-intron (ENSMUSG00000024855.10, intron 1 of 23) 10074 ENSMUSG00000118104.1 ENSMUSG00000118104 ENSMUST00000235422 Gm50189 processed_pseudogene Interval_5928 chr1 93282683 93283061 + 0 NA TTS (ENSMUSG00000047793.13) protein_coding-TTS (ENSMUSG00000047793.13) 8323 ENSMUSG00000098997.1 ENSMUSG00000098997 ENSMUST00000185062 Mir6901 miRNA Interval_169343 chr9 96529944 96531129 + 0 NA Intergenic Intergenic -5272 ENSMUSG00000099564.2 ENSMUSG00000099564 ENSMUST00000190704 Gm28729 protein_coding Interval_40078 chr12 101036381 101037603 + 0 NA Intergenic Intergenic -2100 ENSMUSG00000114113.1 ENSMUSG00000114113 ENSMUST00000220642 Gm47639 antisense Interval_115311 chr4 95845694 95846420 + 0 NA intron (ENSMUSG00000028573.18, intron 3 of 4) protein_coding-intron (ENSMUSG00000028573.18, intron 13 of 15) 120978 ENSMUSG00000044125.6 ENSMUSG00000044125 ENSMUST00000143332 9530080O11Rik processed_transcript Interval_43643 chr13 34383620 34383825 + 0 NA Intergenic Intergenic 10802 ENSMUSG00000113843.1 ENSMUSG00000113843 ENSMUST00000220725 Gm6129 processed_pseudogene Interval_36766 chr12 53300961 53301214 + 0 NA intron (ENSMUSG00000021010.9, intron 1 of 11) protein_coding-intron (ENSMUSG00000021010.9, intron 1 of 11) 8759 ENSMUSG00000113179.1 ENSMUSG00000113179 ENSMUST00000221214 1700030L22Rik antisense Interval_76003 chr17 74294055 74295819 + 0 NA promoter-TSS (ENSMUSG00000058704.9) protein_coding-promoter-TSS (ENSMUSG00000058704.9) -74 ENSMUSG00000058704.9 ENSMUSG00000058704 ENSMUST00000232861 Memo1 protein_coding Interval_132935 chr5 148831275 148832288 + 0 NA intron (ENSMUSG00000087647.2, intron 3 of 3) lincRNA-intron (ENSMUSG00000087647.2, intron 3 of 3) 11014 ENSMUSG00000087647.2 ENSMUSG00000087647 ENSMUST00000136919 Gm15407 lincRNA Interval_62019 chr15 85919735 85920165 + 0 NA intron (ENSMUSG00000016028.11, intron 21 of 33) protein_coding-intron (ENSMUSG00000016028.11, intron 22 of 34) -17751 ENSMUSG00000016028.11 ENSMUSG00000016028 ENSMUST00000227450 Celsr1 protein_coding Interval_52653 chr14 48258800 48259223 + 0 NA TTS (ENSMUSG00000021846.9) protein_coding-TTS (ENSMUSG00000021846.9) 31810 ENSMUSG00000063885.5 ENSMUSG00000063885 ENSMUST00000181413 Gm6498 transcribed_processed_pseudogene Interval_33401 chr11 116359657 116359903 + 0 NA promoter-TSS (ENSMUSG00000052949.14) protein_coding-promoter-TSS (ENSMUSG00000052949.14) -11862 ENSMUSG00000052949.14 ENSMUSG00000052949 ENSMUST00000149682 Rnf157 protein_coding Interval_13814 chr10 22819225 22820366 + 0 NA exon (ENSMUSG00000045680.8, exon 1 of 2) protein_coding-exon (ENSMUSG00000045680.8, exon 1 of 2) 364 ENSMUSG00000045680.8 ENSMUSG00000045680 ENSMUST00000218002 Tcf21 protein_coding Interval_144623 chr7 27188275 27190640 + 0 NA promoter-TSS (ENSMUSG00000061479.15) protein_coding-promoter-TSS (ENSMUSG00000061479.15) -6324 ENSMUSG00000078786.9 ENSMUSG00000078786 ENSMUST00000123108 BC024978 protein_coding Interval_83201 chr18 82733562 82734009 + 0 NA Intergenic Intergenic -3804 ENSMUSG00000117849.1 ENSMUSG00000117849 ENSMUST00000237986 Gm50355 processed_pseudogene Interval_43346 chr13 29492063 29493398 + 0 NA intron (ENSMUSG00000006191.17, intron 1 of 2) protein_coding-intron (ENSMUSG00000006191.17, intron 11 of 15) 24724 ENSMUSG00000006191.17 ENSMUSG00000006191 ENSMUST00000129231 Cdkal1 protein_coding Interval_96970 chr2 130166183 130167911 + 0 NA Intergenic Intergenic 12287 ENSMUSG00000027404.15 ENSMUSG00000027404 ENSMUST00000150835 Snrpb protein_coding Interval_103830 chr3 53477747 53480476 + 0 NA exon (ENSMUSG00000049504.12, exon 11 of 13) protein_coding-exon (ENSMUSG00000049504.12, exon 11 of 13) 980 ENSMUSG00000049504.12 ENSMUSG00000049504 ENSMUST00000200328 Proser1 protein_coding Interval_61948 chr15 85435599 85435851 + 0 NA intron (ENSMUSG00000016541.10, intron 9 of 11) protein_coding-intron (ENSMUSG00000016541.10, intron 9 of 11) 67502 ENSMUSG00000096607.1 ENSMUSG00000096607 ENSMUST00000178942 7530416G11Rik protein_coding Interval_13708 chr10 21267030 21267227 + 0 NA Intergenic Intergenic -15014 ENSMUSG00000111200.1 ENSMUSG00000111200 ENSMUST00000217285 Gm33728 lincRNA Interval_36245 chr12 40247658 40249137 + 0 NA promoter-TSS (ENSMUSG00000001627.12) protein_coding-promoter-TSS (ENSMUSG00000001627.12) -22615 ENSMUSG00000113181.1 ENSMUSG00000113181 ENSMUST00000222014 Gm47954 processed_pseudogene Interval_77999 chr18 6535345 6535997 + 0 NA Intergenic Intergenic -21459 ENSMUSG00000117425.1 ENSMUSG00000117425 ENSMUST00000234402 Gm7464 processed_pseudogene Interval_134468 chr6 28955419 28956198 + 0 NA Intergenic Intergenic -25826 ENSMUSG00000092090.2 ENSMUSG00000092090 ENSMUST00000164104 Gm3294 lincRNA Interval_5388 chr1 88424446 88425131 + 0 NA intron (ENSMUSG00000026295.12, intron 4 of 4) protein_coding-intron (ENSMUSG00000026295.12, intron 7 of 7) 17382 ENSMUSG00000026295.12 ENSMUSG00000026295 ENSMUST00000189225 Spp2 protein_coding Interval_72793 chr17 32209215 32210514 + 0 NA intron (ENSMUSG00000024002.18, intron 12 of 12) protein_coding-intron (ENSMUSG00000024002.18, intron 12 of 19) -20315 ENSMUSG00000037577.13 ENSMUSG00000037577 ENSMUST00000162117 Ephx3 protein_coding Interval_65260 chr16 20990315 20991652 + 0 NA Intergenic Intergenic -29841 ENSMUSG00000116732.1 ENSMUSG00000116732 ENSMUST00000232658 Gm18769 processed_pseudogene Interval_93251 chr2 71483763 71484126 + 0 NA intron (ENSMUSG00000041921.16, intron 1 of 8) protein_coding-intron (ENSMUSG00000041921.16, intron 1 of 9) -11327 ENSMUSG00000088066.1 ENSMUSG00000088066 ENSMUST00000157441 Gm23253 snRNA Interval_115461 chr4 99160145 99160400 + 0 NA intron (ENSMUSG00000086498.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000086498.1, intron 1 of 2) 1370 ENSMUSG00000086498.1 ENSMUSG00000086498 ENSMUST00000132337 Gm12681 lincRNA Interval_138245 chr6 86565776 86566017 + 0 NA intron (ENSMUSG00000097048.7, intron 1 of 2) antisense-intron (ENSMUSG00000097048.7, intron 1 of 2) 8265 ENSMUSG00000093162.1 ENSMUSG00000093162 ENSMUST00000175421 Gm22184 miRNA Interval_38482 chr12 79347434 79348089 + 0 NA intron (ENSMUSG00000059060.15, intron 1 of 2) protein_coding-intron (ENSMUSG00000059060.15, intron 7 of 7) 20408 ENSMUSG00000059060.15 ENSMUSG00000059060 ENSMUST00000221257 Rad51b protein_coding Interval_57501 chr15 11881821 11883387 + 0 NA intron (ENSMUSG00000022206.7, intron 3 of 7) protein_coding-intron (ENSMUSG00000022206.7, intron 3 of 7) 23070 ENSMUSG00000022206.7 ENSMUSG00000022206 ENSMUST00000226878 Npr3 protein_coding Interval_83696 chr19 3788285 3788526 + 0 NA intron (ENSMUSG00000045098.19, intron 3 of 9) protein_coding-intron (ENSMUSG00000045098.19, intron 2 of 8) 20259 ENSMUSG00000045098.19 ENSMUSG00000045098 ENSMUST00000176125 Kmt5b protein_coding Interval_9700 chr1 161145520 161146346 + 0 NA intron (ENSMUSG00000044835.15, intron 1 of 4) protein_coding-intron (ENSMUSG00000044835.15, intron 1 of 5) 3210 ENSMUSG00000044835.15 ENSMUSG00000044835 ENSMUST00000052245 Ankrd45 protein_coding Interval_117434 chr4 123662606 123665812 + 0 NA intron (ENSMUSG00000028649.21, intron 1 of 97) protein_coding-intron (ENSMUSG00000028649.21, intron 1 of 92) -1672 ENSMUSG00000087307.1 ENSMUSG00000087307 ENSMUST00000138861 Gm12925 antisense Interval_133468 chr6 5410688 5411518 + 0 NA intron (ENSMUSG00000042607.15, intron 3 of 5) protein_coding-intron (ENSMUSG00000042607.15, intron 3 of 5) 20676 ENSMUSG00000042607.15 ENSMUSG00000042607 ENSMUST00000183358 Asb4 protein_coding Interval_36947 chr12 55528232 55528779 + 0 NA Intergenic Intergenic 30784 ENSMUSG00000112348.1 ENSMUSG00000112348 ENSMUST00000218356 Gm36634 processed_transcript Interval_45432 chr13 55135314 55136206 + 0 NA TTS (ENSMUSG00000021481.11) protein_coding-TTS (ENSMUSG00000021481.11) -2212 ENSMUSG00000091768.1 ENSMUSG00000091768 ENSMUST00000164344 Gm17617 protein_coding Interval_37942 chr12 73210556 73211605 + 0 NA intron (ENSMUSG00000021103.12, intron 6 of 6) protein_coding-intron (ENSMUSG00000021103.12, intron 6 of 7) -65175 ENSMUSG00000077785.1 ENSMUSG00000077785 ENSMUST00000104597 Gm23910 snoRNA Interval_120767 chr4 150542326 150542578 + 0 NA intron (ENSMUSG00000039852.17, intron 11 of 22) protein_coding-intron (ENSMUSG00000039852.17, intron 5 of 16) 26092 ENSMUSG00000085213.1 ENSMUSG00000085213 ENSMUST00000128800 Gm13091 antisense Interval_65756 chr16 27388269 27389816 + 0 NA promoter-TSS (ENSMUSG00000038127.15) protein_coding-promoter-TSS (ENSMUSG00000038127.15) 173 ENSMUSG00000038127.15 ENSMUSG00000038127 ENSMUST00000149077 Ccdc50 protein_coding Interval_124252 chr5 42652007 42652422 + 0 NA Intergenic Intergenic -151800 ENSMUSG00000106813.1 ENSMUSG00000106813 ENSMUST00000202197 Gm7181 processed_pseudogene Interval_164441 chr9 37052819 37054816 + 0 NA intron (ENSMUSG00000035934.16, intron 2 of 4) protein_coding-intron (ENSMUSG00000035934.16, intron 2 of 12) 27418 ENSMUSG00000077401.1 ENSMUSG00000077401 ENSMUST00000104213 n-R5s82 rRNA Interval_54636 chr14 72555474 72556610 + 0 NA intron (ENSMUSG00000033487.14, intron 21 of 23) protein_coding-intron (ENSMUSG00000033487.14, intron 23 of 25) -23393 ENSMUSG00000108975.1 ENSMUSG00000108975 ENSMUST00000208959 Mlnr-ps unitary_pseudogene Interval_104699 chr3 69522208 69522606 + 0 NA intron (ENSMUSG00000027784.10, intron 2 of 3) protein_coding-intron (ENSMUSG00000027784.10, intron 2 of 3) 25194 ENSMUSG00000027784.10 ENSMUSG00000027784 ENSMUST00000128637 Ppm1l protein_coding Interval_29966 chr11 88414179 88415055 + 0 NA intron (ENSMUSG00000069769.13, intron 2 of 5) protein_coding-intron (ENSMUSG00000069769.13, intron 7 of 13) 18897 ENSMUSG00000084411.2 ENSMUSG00000084411 ENSMUST00000120278 Gm11510 processed_pseudogene Interval_165535 chr9 49098270 49099488 + 0 NA intron (ENSMUSG00000032268.13, intron 1 of 13) protein_coding-intron (ENSMUSG00000032268.13, intron 1 of 13) -3849 ENSMUSG00000032268.13 ENSMUSG00000032268 ENSMUST00000170426 Tmprss5 protein_coding Interval_128113 chr5 111053574 111053775 + 0 NA intron (ENSMUSG00000033209.17, intron 2 of 22) protein_coding-intron (ENSMUSG00000033209.17, intron 2 of 23) 25122 ENSMUSG00000105890.1 ENSMUSG00000105890 ENSMUST00000197083 Gm42780 TEC Interval_96800 chr2 128403148 128403362 + 0 NA promoter-TSS (ENSMUSG00000074813.14) lincRNA-promoter-TSS (ENSMUSG00000074813.14) -20399 ENSMUSG00000079053.3 ENSMUSG00000079053 ENSMUST00000131961 Gm14010 lincRNA Interval_50745 chr14 18879420 18880121 + 0 NA intron (ENSMUSG00000058317.12, intron 2 of 4) protein_coding-intron (ENSMUSG00000058317.12, intron 1 of 4) 13875 ENSMUSG00000058317.12 ENSMUSG00000058317 ENSMUST00000144873 Ube2e2 protein_coding Interval_121364 chr4 155278983 155280282 + 0 NA intron (ENSMUSG00000029053.16, intron 7 of 14) protein_coding-intron (ENSMUSG00000029053.16, intron 10 of 17) 29666 ENSMUSG00000073684.13 ENSMUSG00000073684 ENSMUST00000156404 Faap20 protein_coding Interval_137292 chr6 71118858 71120615 + 0 NA Intergenic Intergenic -4874 ENSMUSG00000068396.9 ENSMUSG00000068396 ENSMUST00000121998 Rpl34-ps1 processed_pseudogene Interval_14952 chr10 41425558 41426819 + 0 NA intron (ENSMUSG00000091415.5, intron 35 of 39) protein_coding-intron (ENSMUSG00000091415.5, intron 35 of 39) -17911 ENSMUSG00000098818.1 ENSMUSG00000098818 ENSMUST00000183534 Gm27783 rRNA Interval_162139 chr8 125460154 125461632 + 0 NA intron (ENSMUSG00000001995.9, intron 10 of 22) protein_coding-intron (ENSMUSG00000001995.9, intron 8 of 20) 108915 ENSMUSG00000001995.9 ENSMUSG00000001995 ENSMUST00000212604 Sipa1l2 protein_coding Interval_53978 chr14 64027885 64028774 + 0 NA exon (ENSMUSG00000046049.7, exon 4 of 4) protein_coding-exon (ENSMUSG00000046049.7, exon 4 of 4) -1544 ENSMUSG00000046049.7 ENSMUSG00000046049 ENSMUST00000224314 Rp1l1 protein_coding Interval_28996 chr11 79793021 79793981 + 0 NA intron (ENSMUSG00000086474.2, intron 1 of 1) lincRNA-intron (ENSMUSG00000086474.2, intron 4 of 4) 11671 ENSMUSG00000086474.2 ENSMUSG00000086474 ENSMUST00000162268 9130204K15Rik lincRNA Interval_88359 chr2 4420190 4421985 + 0 NA intron (ENSMUSG00000026657.17, intron 1 of 1) protein_coding-intron (ENSMUSG00000026657.17, intron 1 of 23) -40020 ENSMUSG00000075826.1 ENSMUSG00000075826 ENSMUST00000101878 Gm23691 snRNA Interval_60043 chr15 64191298 64191864 + 0 NA TTS (ENSMUSG00000022377.16) protein_coding-TTS (ENSMUSG00000022377.16) -67775 ENSMUSG00000022377.16 ENSMUSG00000022377 ENSMUST00000175963 Asap1 protein_coding Interval_34184 chr11 121154051 121154853 + 0 NA Intergenic Intergenic -5819 ENSMUSG00000039321.1 ENSMUSG00000039321 ENSMUST00000039044 Uts2r protein_coding Interval_103828 chr3 53462712 53464154 + 0 NA promoter-TSS (ENSMUSG00000042997.13) protein_coding-promoter-TSS (ENSMUSG00000042997.13) -182 ENSMUSG00000042997.13 ENSMUSG00000042997 ENSMUST00000153342 Nhlrc3 protein_coding Interval_21807 chr11 4471857 4472070 + 0 NA Intergenic Intergenic 16403 ENSMUSG00000034354.17 ENSMUSG00000034354 ENSMUST00000144242 Mtmr3 protein_coding Interval_34483 chr12 4553737 4553953 + 0 NA promoter-TSS (ENSMUSG00000112819.1) lincRNA-promoter-TSS (ENSMUSG00000112819.1) 15693 ENSMUSG00000112819.1 ENSMUSG00000112819 ENSMUST00000220320 Gm46332 lincRNA Interval_120929 chr4 151702249 151703024 + 0 NA intron (ENSMUSG00000014592.21, intron 2 of 7) protein_coding-intron (ENSMUSG00000014592.21, intron 3 of 23) 159068 ENSMUSG00000014592.21 ENSMUSG00000014592 ENSMUST00000135780 Camta1 protein_coding Interval_108026 chr3 120192642 120193164 + 0 NA Intergenic Intergenic 125086 ENSMUSG00000065684.1 ENSMUSG00000065684 ENSMUST00000083750 Gm23733 snRNA Interval_145579 chr7 35703559 35704074 + 0 NA intron (ENSMUSG00000043671.14, intron 15 of 18) protein_coding-intron (ENSMUSG00000043671.14, intron 15 of 18) 4749 ENSMUSG00000043671.14 ENSMUSG00000043671 ENSMUST00000124116 Dpy19l3 protein_coding Interval_41672 chr12 117628983 117629443 + 0 NA intron (ENSMUSG00000041992.9, intron 7 of 8) protein_coding-intron (ENSMUSG00000041992.9, intron 9 of 27) 27174 ENSMUSG00000113575.1 ENSMUSG00000113575 ENSMUST00000223270 A930023M06Rik sense_intronic Interval_147359 chr7 66108877 66110924 + 0 NA exon (ENSMUSG00000032640.10, exon 1 of 3) protein_coding-exon (ENSMUSG00000032640.10, exon 1 of 3) 385 ENSMUSG00000032640.10 ENSMUSG00000032640 ENSMUST00000036372 Chsy1 protein_coding Interval_135249 chr6 37824881 37826206 + 0 NA Intergenic Intergenic 19457 ENSMUSG00000080242.5 ENSMUSG00000080242 ENSMUST00000122373 Atp6v0c-ps2 processed_pseudogene Interval_98791 chr2 154990140 154990369 + 0 NA intron (ENSMUSG00000027596.10, intron 3 of 4) protein_coding-intron (ENSMUSG00000027596.10, intron 1 of 3) -23218 ENSMUSG00000027596.10 ENSMUSG00000027596 ENSMUST00000148300 a protein_coding Interval_31851 chr11 103346795 103347129 + 0 NA exon (ENSMUSG00000085887.2, exon 3 of 4) antisense-exon (ENSMUSG00000085887.2, exon 3 of 4) 2209 ENSMUSG00000085887.2 ENSMUSG00000085887 ENSMUST00000124462 Arhgap27os3 antisense Interval_35077 chr12 17113615 17114635 + 0 NA Intergenic Intergenic 48712 ENSMUSG00000113447.1 ENSMUSG00000113447 ENSMUST00000221508 Gm48538 lincRNA Interval_40610 chr12 106017954 106018346 + 0 NA intron (ENSMUSG00000021115.15, intron 1 of 13) protein_coding-intron (ENSMUSG00000021115.15, intron 1 of 14) -7657 ENSMUSG00000021115.15 ENSMUSG00000021115 ENSMUST00000220629 Vrk1 protein_coding Interval_159798 chr8 103769794 103770048 + 0 NA Intergenic Intergenic 166122 ENSMUSG00000110336.1 ENSMUSG00000110336 ENSMUST00000211119 4933400L20Rik lincRNA Interval_54046 chr14 64755112 64755433 + 0 NA intron (ENSMUSG00000060012.9, intron 21 of 39) protein_coding-intron (ENSMUSG00000060012.9, intron 21 of 39) 1354 ENSMUSG00000064442.1 ENSMUSG00000064442 ENSMUST00000082508 Gm26225 snoRNA Interval_48107 chr13 96145781 96146019 + 0 NA Intergenic Intergenic 12531 ENSMUSG00000100475.1 ENSMUSG00000100475 ENSMUST00000188138 Gm29543 lincRNA Interval_77824 chr18 4222732 4223040 + 0 NA Intergenic Intergenic -23948 ENSMUSG00000073647.4 ENSMUSG00000073647 ENSMUST00000097690 Gm10557 processed_pseudogene Interval_113 GL456239.1 20321 20581 + 0 NA NA NA NA NA Interval_58169 chr15 30198126 30198447 + 0 NA intron (ENSMUSG00000022240.10, intron 1 of 2) protein_coding-intron (ENSMUSG00000022240.10, intron 1 of 22) -145730 ENSMUSG00000065726.1 ENSMUSG00000065726 ENSMUST00000083792 Gm26163 snoRNA Interval_66614 chr16 35651148 35651820 + 0 NA exon (ENSMUSG00000052133.16, exon 11 of 22) protein_coding-exon (ENSMUSG00000052133.16, exon 11 of 22) -7101 ENSMUSG00000052133.16 ENSMUSG00000052133 ENSMUST00000128966 Sema5b protein_coding Interval_140758 chr6 121095752 121096051 + 0 NA intron (ENSMUSG00000051586.17, intron 1 of 14) protein_coding-intron (ENSMUSG00000051586.17, intron 1 of 14) -14292 ENSMUSG00000051586.17 ENSMUSG00000051586 ENSMUST00000207993 Mical3 protein_coding Interval_520 chr1 6937476 6937681 + 0 NA Intergenic Intergenic 7819 ENSMUSG00000103282.1 ENSMUSG00000103282 ENSMUST00000191703 Gm37275 processed_pseudogene Interval_120860 chr4 151095386 151095937 + 0 NA intron (ENSMUSG00000014592.21, intron 11 of 24) protein_coding-intron (ENSMUSG00000014592.21, intron 11 of 23) 6091 ENSMUSG00000078491.2 ENSMUSG00000078491 ENSMUST00000105667 Gm13090 protein_coding Interval_88538 chr2 5931937 5932305 + 0 NA intron (ENSMUSG00000025815.13, intron 2 of 16) protein_coding-intron (ENSMUSG00000025815.13, intron 2 of 17) -20285 ENSMUSG00000025815.13 ENSMUSG00000025815 ENSMUST00000151649 Dhtkd1 protein_coding Interval_46258 chr13 63082914 63083909 + 0 NA intron (ENSMUSG00000021458.17, intron 1 of 7) protein_coding-intron (ENSMUSG00000021458.17, intron 4 of 15) -50640 ENSMUSG00000113257.1 ENSMUSG00000113257 ENSMUST00000223302 Gm30409 sense_intronic Interval_33981 chr11 119802030 119802299 + 0 NA intron (ENSMUSG00000025583.15, intron 9 of 32) protein_coding-intron (ENSMUSG00000025583.15, intron 9 of 33) 32201 ENSMUSG00000085081.1 ENSMUSG00000085081 ENSMUST00000127450 Rptoros antisense Interval_34320 chr12 3370871 3371437 + 0 NA intron (ENSMUSG00000020668.10, intron 2 of 8) protein_coding-intron (ENSMUSG00000020668.10, intron 1 of 7) 2725 ENSMUSG00000112655.1 ENSMUSG00000112655 ENSMUST00000220255 Gm48511 TEC Interval_137337 chr6 71451121 71451333 + 0 NA promoter-TSS (ENSMUSG00000108213.1) lincRNA-promoter-TSS (ENSMUSG00000108213.1) -765 ENSMUSG00000108213.1 ENSMUSG00000108213 ENSMUST00000203903 Gm44172 lincRNA Interval_68878 chr16 87753013 87753258 + 0 NA Intergenic Intergenic 8508 ENSMUSG00000088684.1 ENSMUSG00000088684 ENSMUST00000158059 Gm23994 snoRNA Interval_108905 chr3 133160963 133161239 + 0 NA intron (ENSMUSG00000040969.14, intron 3 of 3) protein_coding-intron (ENSMUSG00000040969.14, intron 3 of 13) 60714 ENSMUSG00000028016.9 ENSMUSG00000028016 ENSMUST00000160669 Ints12 protein_coding Interval_37913 chr12 73021085 73021638 + 0 NA Intergenic Intergenic 21454 ENSMUSG00000051367.8 ENSMUSG00000051367 ENSMUST00000175677 Six1 protein_coding Interval_99417 chr2 160856580 160856974 + 0 NA intron (ENSMUSG00000085303.3, intron 2 of 2) protein_coding-intron (ENSMUSG00000035877.17, intron 1 of 2) 11164 ENSMUSG00000081854.1 ENSMUSG00000081854 ENSMUST00000118983 Gm11447 processed_pseudogene Interval_118799 chr4 133787403 133787986 + 0 NA Intergenic Intergenic 10025 ENSMUSG00000084555.1 ENSMUSG00000084555 ENSMUST00000122606 Gm25270 snRNA Interval_106739 chr3 100244163 100244358 + 0 NA Intergenic Intergenic 43573 ENSMUSG00000027865.10 ENSMUSG00000027865 ENSMUST00000200036 Gdap2 protein_coding Interval_18293 chr10 84646485 84647370 + 0 NA intron (ENSMUSG00000034453.8, intron 3 of 6) protein_coding-intron (ENSMUSG00000034453.8, intron 10 of 27) 8793 ENSMUSG00000034453.8 ENSMUSG00000034453 ENSMUST00000213543 Polr3b protein_coding Interval_149588 chr7 99858513 99859398 + 0 NA promoter-TSS (ENSMUSG00000035211.9) protein_coding-promoter-TSS (ENSMUSG00000035211.9) -44 ENSMUSG00000035227.7 ENSMUSG00000035227 ENSMUST00000208562 Spcs2 protein_coding Interval_148201 chr7 79785922 79786697 + 0 NA TTS (ENSMUSG00000039099.7) protein_coding-TTS (ENSMUSG00000039099.7) 4316 ENSMUSG00000108506.1 ENSMUSG00000108506 ENSMUST00000206719 Gm44705 processed_pseudogene Interval_96630 chr2 126638126 126638601 + 0 NA TTS (ENSMUSG00000027361.15) protein_coding-TTS (ENSMUSG00000027361.15) -3676 ENSMUSG00000088200.1 ENSMUSG00000088200 ENSMUST00000157575 Gm23753 snRNA Interval_4873 chr1 80746278 80746667 + 0 NA TTS (ENSMUSG00000102721.1) TEC-TTS (ENSMUSG00000102721.1) 2582 ENSMUSG00000102721.1 ENSMUSG00000102721 ENSMUST00000195842 A630081D01Rik TEC Interval_2885 chr1 47720599 47721683 + 0 NA Intergenic Intergenic 28258 ENSMUSG00000094968.1 ENSMUSG00000094968 ENSMUST00000178780 Gm22419 miRNA Interval_37926 chr12 73085482 73086706 + 0 NA Intergenic Intergenic 27362 ENSMUSG00000034460.9 ENSMUSG00000034460 ENSMUST00000175693 Six4 protein_coding Interval_10585 chr1 172023971 172024778 + 0 NA intron (ENSMUSG00000026556.15, intron 1 of 4) protein_coding-intron (ENSMUSG00000026556.15, intron 1 of 7) 2337 ENSMUSG00000026556.15 ENSMUSG00000026556 ENSMUST00000138714 Vangl2 protein_coding Interval_71488 chr17 24098328 24099469 + 0 NA intron (ENSMUSG00000024122.16, intron 3 of 10) protein_coding-intron (ENSMUSG00000024122.16, intron 6 of 13) 12034 ENSMUSG00000117523.1 ENSMUSG00000117523 ENSMUST00000234317 Gm50071 antisense Interval_96585 chr2 125967553 125967742 + 0 NA intron (ENSMUSG00000027207.15, intron 8 of 9) protein_coding-intron (ENSMUSG00000027207.15, intron 8 of 9) -67011 ENSMUSG00000027208.14 ENSMUSG00000027208 ENSMUST00000110442 Fgf7 protein_coding Interval_57572 chr15 12449028 12451039 + 0 NA intron (ENSMUSG00000022197.16, intron 3 of 7) protein_coding-intron (ENSMUSG00000022197.16, intron 2 of 23) -37653 ENSMUSG00000022197.16 ENSMUSG00000022197 ENSMUST00000189746 Pdzd2 protein_coding Interval_124706 chr5 53469521 53470357 + 0 NA intron (ENSMUSG00000039191.12, intron 1 of 6) protein_coding-intron (ENSMUSG00000039191.12, intron 1 of 6) 51366 ENSMUSG00000088646.1 ENSMUSG00000088646 ENSMUST00000158021 Gm26486 rRNA Interval_92470 chr2 59942539 59942895 + 0 NA intron (ENSMUSG00000026987.16, intron 3 of 9) protein_coding-intron (ENSMUSG00000026987.16, intron 13 of 33) 49627 ENSMUSG00000081236.1 ENSMUSG00000081236 ENSMUST00000120482 Gm13574 processed_pseudogene Interval_138831 chr6 92275505 92275746 + 0 NA Intergenic Intergenic -4053 ENSMUSG00000108140.1 ENSMUSG00000108140 ENSMUST00000204384 Gm44803 processed_pseudogene Interval_158683 chr8 85166389 85167961 + 0 NA intron (ENSMUSG00000062687.6, intron 1 of 1) protein_coding-intron (ENSMUSG00000062687.6, intron 1 of 1) 15251 ENSMUSG00000062687.6 ENSMUSG00000062687 ENSMUST00000076896 Cks1brt protein_coding Interval_72161 chr17 28349913 28351848 + 0 NA promoter-TSS (ENSMUSG00000002249.21) protein_coding-promoter-TSS (ENSMUSG00000002249.21) -95 ENSMUSG00000002249.21 ENSMUSG00000002249 ENSMUST00000233330 Tead3 protein_coding Interval_9675 chr1 160949097 160949469 + 0 NA intron (ENSMUSG00000040423.11, intron 9 of 20) protein_coding-intron (ENSMUSG00000040423.11, intron 7 of 18) -29405 ENSMUSG00000026715.12 ENSMUSG00000026715 ENSMUST00000194455 Serpinc1 protein_coding Interval_6300 chr1 105682869 105683070 + 0 NA intron (ENSMUSG00000026319.13, intron 3 of 4) protein_coding-intron (ENSMUSG00000026319.13, intron 2 of 28) 18528 ENSMUSG00000026319.13 ENSMUSG00000026319 ENSMUST00000188588 Relch protein_coding Interval_59211 chr15 48583424 48584035 + 0 NA intron (ENSMUSG00000022311.15, intron 3 of 70) protein_coding-intron (ENSMUSG00000022311.15, intron 3 of 70) 32421 ENSMUSG00000065742.1 ENSMUSG00000065742 ENSMUST00000083808 Gm25007 snRNA Interval_81807 chr18 64920612 64921557 + 0 NA promoter-TSS (ENSMUSG00000024589.18) protein_coding-promoter-TSS (ENSMUSG00000024589.18) -32593 ENSMUSG00000114210.2 ENSMUSG00000114210 ENSMUST00000224731 A330084C13Rik antisense Interval_93550 chr2 74061097 74061727 + 0 NA Intergenic Intergenic 40930 ENSMUSG00000085387.1 ENSMUSG00000085387 ENSMUST00000151443 A630050E04Rik lincRNA Interval_125742 chr5 73780732 73783091 + 0 NA Intergenic Intergenic 122650 ENSMUSG00000029155.16 ENSMUSG00000029155 ENSMUST00000178631 Spata18 protein_coding Interval_153150 chr7 141666121 141666737 + 0 NA Intergenic Intergenic -11121 ENSMUSG00000048191.15 ENSMUSG00000048191 ENSMUST00000190907 Muc6 protein_coding Interval_169984 chr9 103426225 103427710 + 0 NA intron (ENSMUSG00000086236.9, intron 1 of 2) protein_coding-intron (ENSMUSG00000032556.11, intron 5 of 6) -3767 ENSMUSG00000111399.1 ENSMUSG00000111399 ENSMUST00000216687 Gm47328 lincRNA Interval_988 chr1 13646603 13646815 + 0 NA intron (ENSMUSG00000025937.6, intron 3 of 6) protein_coding-intron (ENSMUSG00000025937.6, intron 3 of 6) -3961 ENSMUSG00000102982.1 ENSMUSG00000102982 ENSMUST00000194537 Gm38319 TEC Interval_109910 chr3 151084027 151084253 + 0 NA Intergenic Intergenic 12627 ENSMUSG00000105425.1 ENSMUSG00000105425 ENSMUST00000196084 Gm43469 TEC Interval_110294 chr3 156093597 156093832 + 0 NA Intergenic Intergenic 32823 ENSMUSG00000105949.1 ENSMUSG00000105949 ENSMUST00000195916 Gm6510 processed_pseudogene Interval_166831 chr9 63083985 63084652 + 0 NA Intergenic Intergenic -1345 ENSMUSG00000111144.1 ENSMUSG00000111144 ENSMUST00000214934 Gm48193 lincRNA Interval_34368 chr12 3644953 3645259 + 0 NA exon (ENSMUSG00000071454.13, exon 7 of 7) protein_coding-exon (ENSMUSG00000071454.13, exon 7 of 7) -54072 ENSMUSG00000077830.1 ENSMUSG00000077830 ENSMUST00000104640 Gm26050 miRNA Interval_6889 chr1 120390026 120390790 + 0 NA Intergenic Intergenic -45397 ENSMUSG00000101275.1 ENSMUSG00000101275 ENSMUST00000186237 1700012E03Rik lincRNA Interval_28813 chr11 78483209 78484038 + 0 NA exon (ENSMUSG00000050132.13, exon 6 of 9) protein_coding-exon (ENSMUSG00000050132.13, exon 6 of 9) 3672 ENSMUSG00000050132.13 ENSMUSG00000050132 ENSMUST00000130955 Sarm1 protein_coding Interval_18823 chr10 91130444 91132327 + 0 NA Intergenic Intergenic -7363 ENSMUSG00000061904.12 ENSMUSG00000061904 ENSMUST00000172442 Slc25a3 protein_coding Interval_131416 chr5 137039102 137039813 + 0 NA intron (ENSMUSG00000004849.14, intron 3 of 3) protein_coding-intron (ENSMUSG00000004849.14, intron 3 of 4) -1807 ENSMUSG00000004849.14 ENSMUSG00000004849 ENSMUST00000129356 Ap1s1 protein_coding Interval_143728 chr7 15952640 15953757 + 0 NA intron (ENSMUSG00000074364.6, intron 4 of 5) protein_coding-intron (ENSMUSG00000074364.6, intron 4 of 5) 6950 ENSMUSG00000093249.2 ENSMUSG00000093249 ENSMUST00000175508 Gm24576 misc_RNA Interval_49673 chr13 113897010 113897243 + 0 NA intron (ENSMUSG00000042348.10, intron 1 of 3) protein_coding-intron (ENSMUSG00000042348.10, intron 1 of 4) 102533 ENSMUSG00000042348.10 ENSMUSG00000042348 ENSMUST00000224068 Arl15 protein_coding Interval_59139 chr15 44674676 44675345 + 0 NA intron (ENSMUSG00000022340.15, intron 6 of 6) protein_coding-intron (ENSMUSG00000022340.15, intron 7 of 7) 55581 ENSMUSG00000022339.9 ENSMUSG00000022339 ENSMUST00000022964 Ebag9 protein_coding Interval_46045 chr13 60561547 60561955 + 0 NA Intergenic Intergenic -32342 ENSMUSG00000080666.1 ENSMUSG00000080666 ENSMUST00000117016 Gm25000 miRNA Interval_128046 chr5 110480589 110482200 + 0 NA exon (ENSMUSG00000105603.1, exon 1 of 1) processed_pseudogene-exon (ENSMUSG00000105603.1, exon 1 of 1) 807 ENSMUSG00000105603.1 ENSMUSG00000105603 ENSMUST00000199828 Gm32996 processed_pseudogene Interval_166394 chr9 58873358 58874599 + 0 NA TTS (ENSMUSG00000032340.8) protein_coding-TTS (ENSMUSG00000032340.8) 50566 ENSMUSG00000032338.9 ENSMUSG00000032338 ENSMUST00000034889 Hcn4 protein_coding Interval_123171 chr5 30342113 30343579 + 0 NA TTS (ENSMUSG00000073102.7) protein_coding-TTS (ENSMUSG00000073102.7) 1066 ENSMUSG00000073102.7 ENSMUSG00000073102 ENSMUST00000198023 Drc1 protein_coding Interval_40649 chr12 106411005 106411805 + 0 NA Intergenic Intergenic 36261 ENSMUSG00000092066.1 ENSMUSG00000092066 ENSMUST00000167922 1700121N20Rik lincRNA Interval_96026 chr2 119263319 119263633 + 0 NA Intergenic Intergenic 7796 ENSMUSG00000034226.7 ENSMUSG00000034226 ENSMUST00000037360 Rhov protein_coding Interval_15957 chr10 59627036 59627313 + 0 NA Intergenic Intergenic -10519 ENSMUSG00000009647.13 ENSMUSG00000009647 ENSMUST00000162012 Mcu protein_coding Interval_92374 chr2 59349426 59350710 + 0 NA intron (ENSMUSG00000026991.20, intron 19 of 20) protein_coding-intron (ENSMUSG00000026991.20, intron 20 of 21) 37403 ENSMUSG00000087455.7 ENSMUSG00000087455 ENSMUST00000155111 5330411J11Rik processed_transcript Interval_28202 chr11 74266830 74267139 + 0 NA promoter-TSS (ENSMUSG00000081864.2) transcribed_unprocessed_pseudogene-promoter-TSS (ENSMUSG00000081864.2) -748 ENSMUSG00000081864.2 ENSMUSG00000081864 ENSMUST00000120649 Olfr405-ps1 transcribed_unprocessed_pseudogene Interval_25750 chr11 51426464 51427430 + 0 NA intron (ENSMUSG00000063564.13, intron 2 of 28) protein_coding-intron (ENSMUSG00000063564.13, intron 2 of 28) -147485 ENSMUSG00000063564.13 ENSMUSG00000063564 ENSMUST00000151098 Col23a1 protein_coding Interval_79129 chr18 24818139 24818924 + 0 NA intron (ENSMUSG00000034295.10, intron 3 of 24) protein_coding-intron (ENSMUSG00000034295.10, intron 3 of 26) 57368 ENSMUSG00000088920.1 ENSMUSG00000088920 ENSMUST00000158295 Gm24294 misc_RNA Interval_14322 chr10 30842318 30844607 + 0 NA promoter-TSS (ENSMUSG00000019789.9) protein_coding-promoter-TSS (ENSMUSG00000019789.9) -1447 ENSMUSG00000019789.9 ENSMUSG00000019789 ENSMUST00000217504 Hey2 protein_coding Interval_97269 chr2 132797661 132798191 + 0 NA Intergenic Intergenic 12709 ENSMUSG00000037376.14 ENSMUSG00000037376 ENSMUST00000127855 Trmt6 protein_coding Interval_5723 chr1 91238885 91239350 + 0 NA Intergenic Intergenic -11539 ENSMUSG00000034343.14 ENSMUSG00000034343 ENSMUST00000185697 Ube2f protein_coding Interval_122426 chr5 22535025 22535291 + 0 NA promoter-TSS (ENSMUSG00000096346.1) snRNA-promoter-TSS (ENSMUSG00000096346.1) -315 ENSMUSG00000096346.1 ENSMUSG00000096346 ENSMUST00000178586 Gm22887 snRNA Interval_152481 chr7 133313386 133313850 + 0 NA Intergenic Intergenic 19583 ENSMUSG00000109619.1 ENSMUSG00000109619 ENSMUST00000209700 Gm45672 lincRNA Interval_57103 chr15 6435745 6436032 + 0 NA TTS (ENSMUSG00000022150.16) protein_coding-TTS (ENSMUSG00000022150.16) -9445 ENSMUSG00000022149.18 ENSMUSG00000022149 ENSMUST00000147905 C9 protein_coding Interval_151711 chr7 126206929 126207219 + 0 NA Intergenic Intergenic -19966 ENSMUSG00000000131.15 ENSMUSG00000000131 ENSMUST00000206784 Xpo6 protein_coding Interval_167661 chr9 71650117 71651209 + 0 NA intron (ENSMUSG00000032232.14, intron 11 of 18) protein_coding-intron (ENSMUSG00000032232.14, intron 11 of 18) -19554 ENSMUSG00000032232.14 ENSMUSG00000032232 ENSMUST00000146567 Cgnl1 protein_coding Interval_28614 chr11 77164512 77165795 + 0 NA intron (ENSMUSG00000050944.14, intron 1 of 2) protein_coding-intron (ENSMUSG00000050944.14, intron 2 of 17) 3763 ENSMUSG00000050944.14 ENSMUSG00000050944 ENSMUST00000155085 Efcab5 protein_coding Interval_160360 chr8 108740288 108741285 + 0 NA exon (ENSMUSG00000104292.1, exon 1 of 1) TEC-exon (ENSMUSG00000104292.1, exon 1 of 1) 3193 ENSMUSG00000104292.1 ENSMUSG00000104292 ENSMUST00000191614 Gm38042 TEC Interval_50022 chr13 119780339 119780558 + 0 NA intron (ENSMUSG00000094870.8, intron 1 of 2) protein_coding-intron (ENSMUSG00000094870.8, intron 4 of 6) 2462 ENSMUSG00000094870.8 ENSMUSG00000094870 ENSMUST00000223812 Zfp131 protein_coding Interval_17722 chr10 79746160 79747024 + 0 NA promoter-TSS (ENSMUSG00000020329.12) protein_coding-promoter-TSS (ENSMUSG00000020329.12) -21 ENSMUSG00000020329.12 ENSMUSG00000020329 ENSMUST00000161375 Polrmt protein_coding Interval_130688 chr5 129761585 129762642 + 0 NA Intergenic Intergenic 25094 ENSMUSG00000029446.14 ENSMUSG00000029446 ENSMUST00000202374 Psph protein_coding Interval_152592 chr7 134917567 134918865 + 0 NA exon (ENSMUSG00000073805.5, exon 2 of 4) protein_coding-exon (ENSMUSG00000073805.5, exon 2 of 4) -6308 ENSMUSG00000109608.1 ENSMUSG00000109608 ENSMUST00000211524 Gm45597 TEC Interval_21743 chr11 4064344 4065319 + 0 NA promoter-TSS (ENSMUSG00000054986.13) protein_coding-promoter-TSS (ENSMUSG00000054986.13) -60 ENSMUSG00000054986.13 ENSMUSG00000054986 ENSMUST00000126396 Sec14l3 protein_coding Interval_15132 chr10 42800841 42801380 + 0 NA intron (ENSMUSG00000019802.13, intron 7 of 19) protein_coding-intron (ENSMUSG00000019802.13, intron 8 of 20) 19657 ENSMUSG00000087719.1 ENSMUSG00000087719 ENSMUST00000157094 Gm26464 ribozyme Interval_71878 chr17 26684776 26685056 + 0 NA intron (ENSMUSG00000015575.15, intron 2 of 3) protein_coding-intron (ENSMUSG00000015575.15, intron 2 of 3) 8759 ENSMUSG00000015575.15 ENSMUSG00000015575 ENSMUST00000167352 Atp6v0e protein_coding Interval_49244 chr13 109780698 109781126 + 0 NA intron (ENSMUSG00000021699.17, intron 6 of 15) protein_coding-intron (ENSMUSG00000021699.17, intron 5 of 14) -122897 ENSMUSG00000084651.1 ENSMUSG00000084651 ENSMUST00000122702 Mir1904 miRNA Interval_19584 chr10 103986952 103987316 + 0 NA exon (ENSMUSG00000112281.1, exon 1 of 2) lincRNA-exon (ENSMUSG00000112281.1, exon 1 of 2) 141 ENSMUSG00000112281.1 ENSMUSG00000112281 ENSMUST00000218778 Gm47226 lincRNA Interval_105679 chr3 88536288 88537466 + 0 NA promoter-TSS (ENSMUSG00000084728.1) miRNA-promoter-TSS (ENSMUSG00000084728.1) -495 ENSMUSG00000084728.1 ENSMUSG00000084728 ENSMUST00000122779 Mir1905 miRNA Interval_28968 chr11 79628508 79629197 + 0 NA intron (ENSMUSG00000017639.13, intron 3 of 14) protein_coding-intron (ENSMUSG00000017639.13, intron 3 of 14) -5689 ENSMUSG00000087434.1 ENSMUSG00000087434 ENSMUST00000145652 Rab11fip4os1 antisense Interval_88772 chr2 10461613 10461955 + 0 NA intron (ENSMUSG00000061186.15, intron 11 of 22) protein_coding-intron (ENSMUSG00000061186.15, intron 10 of 22) -3503 ENSMUSG00000080500.1 ENSMUSG00000080500 ENSMUST00000116850 Gm22072 miRNA Interval_116784 chr4 117283061 117284386 + 0 NA intron (ENSMUSG00000028677.19, intron 3 of 3) protein_coding-intron (ENSMUSG00000028677.19, intron 8 of 14) -9940 ENSMUSG00000028677.19 ENSMUSG00000028677 ENSMUST00000123222 Rnf220 protein_coding Interval_7996 chr1 135132531 135133160 + 0 NA promoter-TSS (ENSMUSG00000031506.11) protein_coding-promoter-TSS (ENSMUSG00000031506.11) -463 ENSMUSG00000031506.11 ENSMUSG00000031506 ENSMUST00000167080 Ptpn7 protein_coding Interval_111215 chr4 14916276 14917122 + 0 NA Intergenic Intergenic -13977 ENSMUSG00000086587.7 ENSMUSG00000086587 ENSMUST00000152024 Gm11837 antisense Interval_64414 chr16 11221402 11221650 + 0 NA intron (ENSMUSG00000062203.15, intron 14 of 14) protein_coding-intron (ENSMUSG00000062203.15, intron 14 of 14) 17831 ENSMUSG00000097537.2 ENSMUSG00000097537 ENSMUST00000230245 2610020C07Rik antisense Interval_171186 chr9 115042840 115044125 + 0 NA intron (ENSMUSG00000040875.12, intron 1 of 11) protein_coding-intron (ENSMUSG00000040875.12, intron 1 of 11) 44866 ENSMUSG00000040875.12 ENSMUSG00000040875 ENSMUST00000182413 Osbpl10 protein_coding Interval_159516 chr8 95199919 95200610 + 0 NA intron (ENSMUSG00000031788.14, intron 1 of 4) protein_coding-intron (ENSMUSG00000031788.14, intron 1 of 4) 61954 ENSMUSG00000110475.1 ENSMUSG00000110475 ENSMUST00000212925 Gm31036 antisense Interval_13311 chr10 14541179 14541367 + 0 NA intron (ENSMUSG00000039116.7, intron 1 of 23) protein_coding-intron (ENSMUSG00000039116.7, intron 1 of 24) -3217 ENSMUSG00000111888.1 ENSMUSG00000111888 ENSMUST00000220256 Gm46212 antisense Interval_155485 chr8 33869275 33870065 + 0 NA intron (ENSMUSG00000031586.17, intron 1 of 8) protein_coding-intron (ENSMUSG00000031586.17, intron 1 of 7) 16077 ENSMUSG00000098166.1 ENSMUSG00000098166 ENSMUST00000182843 Gm26978 sense_intronic Interval_159799 chr8 103773992 103774392 + 0 NA Intergenic Intergenic 170393 ENSMUSG00000110336.1 ENSMUSG00000110336 ENSMUST00000211119 4933400L20Rik lincRNA Interval_40406 chr12 104680453 104681102 + 0 NA Intergenic Intergenic 41275 ENSMUSG00000041415.10 ENSMUSG00000041415 ENSMUST00000222002 Dicer1 protein_coding Interval_151071 chr7 118296811 118298092 + 0 NA Intergenic Intergenic 17590 ENSMUSG00000087922.1 ENSMUSG00000087922 ENSMUST00000157297 Gm23229 snRNA Interval_33143 chr11 114720544 114721972 + 0 NA TTS (ENSMUSG00000034714.9) protein_coding-TTS (ENSMUSG00000034714.9) -6150 ENSMUSG00000034706.16 ENSMUSG00000034706 ENSMUST00000130692 Dnaic2 protein_coding Interval_123783 chr5 35475211 35475422 + 0 NA Intergenic Intergenic 50255 ENSMUSG00000036596.6 ENSMUSG00000036596 ENSMUST00000132959 Cpz protein_coding Interval_9998 chr1 164798574 164798856 + 0 NA intron (ENSMUSG00000026574.5, intron 1 of 3) protein_coding-intron (ENSMUSG00000026574.5, intron 1 of 3) 2071 ENSMUSG00000026574.5 ENSMUSG00000026574 ENSMUST00000027861 Dpt protein_coding Interval_7901 chr1 134473118 134473307 + 0 NA exon (ENSMUSG00000026455.14, exon 1 of 1) protein_coding-exon (ENSMUSG00000026455.14, exon 1 of 1) 4333 ENSMUSG00000026455.14 ENSMUSG00000026455 ENSMUST00000141458 Klhl12 protein_coding Interval_37511 chr12 69476638 69477183 + 0 NA Intergenic Intergenic -1363 ENSMUSG00000113035.1 ENSMUSG00000113035 ENSMUST00000222980 5830428M24Rik processed_transcript Interval_40898 chr12 109314856 109315061 + 0 NA Intergenic Intergenic 4558 ENSMUSG00000092647.1 ENSMUSG00000092647 ENSMUST00000174906 Gm22234 miRNA Interval_129816 chr5 122513435 122514333 + 0 NA Intergenic Intergenic 7095 ENSMUSG00000088583.1 ENSMUSG00000088583 ENSMUST00000157958 Gm22965 snRNA Interval_105015 chr3 79808693 79809912 + 0 NA Intergenic Intergenic -25631 ENSMUSG00000077461.1 ENSMUSG00000077461 ENSMUST00000104273 Gm26420 snRNA Interval_119710 chr4 139390673 139390867 + 0 NA intron (ENSMUSG00000066036.14, intron 2 of 105) protein_coding-intron (ENSMUSG00000066036.14, intron 2 of 105) 10111 ENSMUSG00000066036.14 ENSMUSG00000066036 ENSMUST00000135534 Ubr4 protein_coding Interval_139923 chr6 112759172 112759368 + 0 NA intron (ENSMUSG00000030257.16, intron 2 of 7) protein_coding-intron (ENSMUSG00000030257.16, intron 11 of 21) -62637 ENSMUSG00000030254.16 ENSMUSG00000030254 ENSMUST00000135092 Rad18 protein_coding Interval_112947 chr4 46342651 46345622 + 0 NA promoter-TSS (ENSMUSG00000087383.7) antisense-promoter-TSS (ENSMUSG00000087383.7) 527 ENSMUSG00000070990.2 ENSMUSG00000070990 ENSMUST00000095097 Foxe1 protein_coding Interval_79942 chr18 36117541 36118470 + 0 NA intron (ENSMUSG00000060275.14, intron 1 of 9) protein_coding-intron (ENSMUSG00000060275.14, intron 2 of 7) 12354 ENSMUSG00000117852.1 ENSMUSG00000117852 ENSMUST00000235667 4930471G03Rik antisense Interval_72564 chr17 30689807 30690145 + 0 NA intron (ENSMUSG00000033826.10, intron 19 of 90) protein_coding-intron (ENSMUSG00000033826.10, intron 21 of 92) 19336 ENSMUSG00000033826.10 ENSMUSG00000033826 ENSMUST00000235567 Dnah8 protein_coding Interval_172651 chrX 39978646 39978923 + 0 NA intron (ENSMUSG00000086157.1, intron 1 of 7) processed_transcript-intron (ENSMUSG00000086157.1, intron 1 of 7) -2413 ENSMUSG00000092777.1 ENSMUSG00000092777 ENSMUST00000175036 Gm26194 miRNA Interval_29883 chr11 87495755 87496156 + 0 NA intron (ENSMUSG00000010342.16, intron 7 of 30) protein_coding-intron (ENSMUSG00000010342.16, intron 7 of 30) 24587 ENSMUSG00000105115.1 ENSMUSG00000105115 ENSMUST00000196353 Rnu3b2 snoRNA Interval_152907 chr7 139647674 139648836 + 0 NA intron (ENSMUSG00000049571.18, intron 20 of 21) protein_coding-intron (ENSMUSG00000049571.18, intron 22 of 58) 11900 ENSMUSG00000083626.1 ENSMUSG00000083626 ENSMUST00000118750 Gm4459 processed_pseudogene Interval_142141 chr6 137577855 137578142 + 0 NA intron (ENSMUSG00000015766.14, intron 1 of 20) protein_coding-intron (ENSMUSG00000015766.14, intron 2 of 21) -7239 ENSMUSG00000015766.14 ENSMUSG00000015766 ENSMUST00000205037 Eps8 protein_coding Interval_47575 chr13 89332350 89332517 + 0 NA Intergenic Intergenic 245986 ENSMUSG00000094463.2 ENSMUSG00000094463 ENSMUST00000178288 Gm8546 processed_pseudogene Interval_30727 chr11 96145452 96146348 + 0 NA intron (ENSMUSG00000038756.13, intron 8 of 14) protein_coding-intron (ENSMUSG00000038756.13, intron 7 of 13) 12114 ENSMUSG00000038756.13 ENSMUSG00000038756 ENSMUST00000107680 Ttll6 protein_coding Interval_147272 chr7 65365302 65365698 + 0 NA TTS (ENSMUSG00000108338.1) TEC-TTS (ENSMUSG00000108338.1) 1282 ENSMUSG00000108338.1 ENSMUSG00000108338 ENSMUST00000206550 Gm44794 TEC Interval_160453 chr8 109595579 109596273 + 0 NA promoter-TSS (ENSMUSG00000031730.18) protein_coding-promoter-TSS (ENSMUSG00000031730.18) 12440 ENSMUSG00000031730.18 ENSMUSG00000031730 ENSMUST00000128350 Dhodh protein_coding Interval_123641 chr5 34187078 34188370 + 0 NA promoter-TSS (ENSMUSG00000037235.13) protein_coding-promoter-TSS (ENSMUSG00000037235.13) -3354 ENSMUSG00000037235.13 ENSMUSG00000037235 ENSMUST00000201763 Mxd4 protein_coding Interval_41529 chr12 116010822 116011391 + 0 NA Intergenic Intergenic -1013 ENSMUSG00000105605.1 ENSMUSG00000105605 ENSMUST00000200562 Ighv1-86 IG_V_pseudogene Interval_96624 chr2 126599041 126599267 + 0 NA promoter-TSS (ENSMUSG00000027360.5) protein_coding-promoter-TSS (ENSMUSG00000027360.5) 20145 ENSMUSG00000027360.5 ENSMUSG00000027360 ENSMUST00000148591 Hdc protein_coding Interval_30032 chr11 88808257 88808588 + 0 NA Intergenic Intergenic 33118 ENSMUSG00000018428.15 ENSMUSG00000018428 ENSMUST00000153787 Akap1 protein_coding Interval_117066 chr4 119320023 119321605 + 0 NA promoter-TSS (ENSMUSG00000060288.13) protein_coding-promoter-TSS (ENSMUSG00000060288.13) -397 ENSMUSG00000060288.13 ENSMUSG00000060288 ENSMUST00000106317 Ppih protein_coding Interval_104693 chr3 69495099 69495400 + 0 NA intron (ENSMUSG00000027784.10, intron 1 of 3) protein_coding-intron (ENSMUSG00000027784.10, intron 1 of 3) -1964 ENSMUSG00000027784.10 ENSMUSG00000027784 ENSMUST00000128637 Ppm1l protein_coding Interval_154639 chr8 22210902 22211410 + 0 NA intron (ENSMUSG00000031479.9, intron 8 of 13) protein_coding-intron (ENSMUSG00000031479.9, intron 8 of 13) -5837 ENSMUSG00000031479.9 ENSMUSG00000031479 ENSMUST00000153949 Vps36 protein_coding Interval_137637 chr6 76987293 76987529 + 0 NA intron (ENSMUSG00000063063.12, intron 2 of 7) protein_coding-intron (ENSMUSG00000063063.12, intron 9 of 17) 156532 ENSMUSG00000063063.12 ENSMUSG00000063063 ENSMUST00000160252 Ctnna2 protein_coding Interval_52360 chr14 45391308 45391551 + 0 NA intron (ENSMUSG00000037722.8, intron 1 of 4) protein_coding-intron (ENSMUSG00000037722.8, intron 1 of 3) -7986 ENSMUSG00000037722.8 ENSMUSG00000037722 ENSMUST00000226590 Gnpnat1 protein_coding Interval_109060 chr3 135513333 135514756 + 0 NA intron (ENSMUSG00000028164.15, intron 5 of 13) protein_coding-intron (ENSMUSG00000028164.15, intron 4 of 16) 12488 ENSMUSG00000083610.1 ENSMUSG00000083610 ENSMUST00000121735 Oaz2-ps processed_pseudogene Interval_84870 chr19 18420334 18420534 + 0 NA Intergenic Intergenic -59642 ENSMUSG00000118192.1 ENSMUSG00000118192 ENSMUST00000237767 Gm50183 processed_pseudogene Interval_79909 chr18 35854321 35854776 + 0 NA promoter-TSS (ENSMUSG00000046668.9) protein_coding-promoter-TSS (ENSMUSG00000046668.9) -7703 ENSMUSG00000117840.1 ENSMUSG00000117840 ENSMUST00000236587 Gm50399 lincRNA Interval_112546 chr4 43025073 43026079 + 0 NA promoter-TSS (ENSMUSG00000028454.16) protein_coding-promoter-TSS (ENSMUSG00000028454.16) 4338 ENSMUSG00000028455.15 ENSMUSG00000028455 ENSMUST00000126026 Stoml2 protein_coding Interval_69795 chr16 96457799 96458023 + 0 NA intron (ENSMUSG00000117081.1, intron 7 of 8) protein_coding-intron (ENSMUSG00000117081.1, intron 7 of 8) 13197 ENSMUSG00000117039.1 ENSMUSG00000117039 ENSMUST00000233005 Gm32358 TEC Interval_10523 chr1 171460284 171461080 + 0 NA intron (ENSMUSG00000038235.4, intron 2 of 2) protein_coding-intron (ENSMUSG00000038235.4, intron 3 of 9) -2168 ENSMUSG00000038235.4 ENSMUSG00000038235 ENSMUST00000155913 F11r protein_coding Interval_54578 chr14 70774514 70776225 + 0 NA promoter-TSS (ENSMUSG00000022102.13) protein_coding-promoter-TSS (ENSMUSG00000022102.13) -510 ENSMUSG00000022102.13 ENSMUSG00000022102 ENSMUST00000164691 Dok2 protein_coding Interval_66067 chr16 31401832 31403025 + 0 NA Intergenic Intergenic -11627 ENSMUSG00000116690.1 ENSMUSG00000116690 ENSMUST00000231871 Gm49736 lincRNA Interval_34009 chr11 119979755 119980351 + 0 NA intron (ENSMUSG00000025372.16, intron 3 of 4) protein_coding-intron (ENSMUSG00000025372.16, intron 3 of 13) -34714 ENSMUSG00000105524.1 ENSMUSG00000105524 ENSMUST00000198674 Mir3065 miRNA Interval_123532 chr5 33273910 33275444 + 0 NA promoter-TSS (ENSMUSG00000037373.12) protein_coding-promoter-TSS (ENSMUSG00000037373.12) 304 ENSMUSG00000037373.12 ENSMUSG00000037373 ENSMUST00000202190 Ctbp1 protein_coding Interval_59721 chr15 58907347 58907584 + 0 NA TTS (ENSMUSG00000037075.7) protein_coding-TTS (ENSMUSG00000037075.7) 7328 ENSMUSG00000037075.7 ENSMUSG00000037075 ENSMUST00000226908 Rnf139 protein_coding Interval_31577 chr11 101478674 101479974 + 0 NA Intergenic Intergenic 3098 ENSMUSG00000080839.1 ENSMUSG00000080839 ENSMUST00000119535 Gm11625 processed_pseudogene Interval_116003 chr4 106907638 106908698 + 0 NA Intergenic Intergenic -60248 ENSMUSG00000086940.1 ENSMUSG00000086940 ENSMUST00000151369 Gm12746 lincRNA Interval_10404 chr1 170477342 170478733 + 0 NA intron (ENSMUSG00000038473.14, intron 2 of 7) protein_coding-intron (ENSMUSG00000038473.14, intron 2 of 3) -152884 ENSMUSG00000102193.1 ENSMUSG00000102193 ENSMUST00000194441 Gm7299 processed_pseudogene Interval_47899 chr13 94255470 94255693 + 0 NA intron (ENSMUSG00000021687.14, intron 1 of 8) protein_coding-intron (ENSMUSG00000021687.14, intron 1 of 8) -9023 ENSMUSG00000021687.14 ENSMUSG00000021687 ENSMUST00000138255 Scamp1 protein_coding Interval_111786 chr4 28924452 28924668 + 0 NA intron (ENSMUSG00000028289.12, intron 1 of 5) protein_coding-intron (ENSMUSG00000028289.12, intron 5 of 16) -109484 ENSMUSG00000086774.1 ENSMUSG00000086774 ENSMUST00000153669 Gm11915 antisense Interval_28864 chr11 78848641 78848966 + 0 NA Intergenic Intergenic 22219 ENSMUSG00000072640.11 ENSMUSG00000072640 ENSMUST00000100748 Lyrm9 protein_coding Interval_174600 chrX 159671342 159671599 + 0 NA intron (ENSMUSG00000040990.17, intron 1 of 13) protein_coding-intron (ENSMUSG00000040990.17, intron 1 of 19) 83005 ENSMUSG00000083906.1 ENSMUSG00000083906 ENSMUST00000119345 Gm15186 processed_pseudogene Interval_12413 chr1 193189156 193189673 + 0 NA intron (ENSMUSG00000090080.2, intron 1 of 1) protein_coding-intron (ENSMUSG00000037318.10, intron 8 of 15) 2140 ENSMUSG00000090080.2 ENSMUSG00000090080 ENSMUST00000162454 Gm15872 antisense Interval_94780 chr2 94254297 94254543 + 0 NA intron (ENSMUSG00000075020.6, intron 1 of 2) lincRNA-intron (ENSMUSG00000075020.6, intron 1 of 1) 6979 ENSMUSG00000076335.1 ENSMUSG00000076335 ENSMUST00000102380 Mir670 miRNA Interval_161170 chr8 118062423 118063057 + 0 NA Intergenic Intergenic -58214 ENSMUSG00000065028.1 ENSMUSG00000065028 ENSMUST00000083094 Gm25200 snoRNA Interval_93396 chr2 72751344 72751632 + 0 NA promoter-TSS (ENSMUSG00000085427.7) lincRNA-promoter-TSS (ENSMUSG00000085427.7) 47978 ENSMUSG00000085252.1 ENSMUSG00000085252 ENSMUST00000124829 8430437L04Rik lincRNA Interval_146151 chr7 44373675 44376059 + 0 NA promoter-TSS (ENSMUSG00000008028.15) protein_coding-promoter-TSS (ENSMUSG00000008028.15) -1267 ENSMUSG00000008028.15 ENSMUSG00000008028 ENSMUST00000134535 1700008O03Rik protein_coding Interval_75321 chr17 65862506 65862847 + 0 NA intron (ENSMUSG00000024096.17, intron 2 of 7) protein_coding-intron (ENSMUSG00000024096.17, intron 3 of 9) 21727 ENSMUSG00000024096.17 ENSMUSG00000024096 ENSMUST00000233784 Ralbp1 protein_coding Interval_59577 chr15 55546761 55547795 + 0 NA intron (ENSMUSG00000022370.13, intron 2 of 5) protein_coding-intron (ENSMUSG00000022370.13, intron 2 of 2) 10470 ENSMUSG00000022370.13 ENSMUSG00000022370 ENSMUST00000170135 Mrpl13 protein_coding Interval_155417 chr8 33451624 33451791 + 0 NA Intergenic Intergenic -32489 ENSMUSG00000109750.1 ENSMUSG00000109750 ENSMUST00000210634 Hmgb1-rs17 unprocessed_pseudogene Interval_140184 chr6 115065915 115066403 + 0 NA Intergenic Intergenic -28304 ENSMUSG00000030316.13 ENSMUSG00000030316 ENSMUST00000144445 Tamm41 protein_coding Interval_159892 chr8 104797516 104797706 + 0 NA exon (ENSMUSG00000069925.6, exon 2 of 2) lincRNA-exon (ENSMUSG00000069925.6, exon 2 of 2) 2374 ENSMUSG00000069925.6 ENSMUSG00000069925 ENSMUST00000212453 4932416K20Rik lincRNA Interval_119900 chr4 140762960 140763681 + 0 NA intron (ENSMUSG00000025330.6, intron 4 of 15) protein_coding-intron (ENSMUSG00000025330.6, intron 4 of 15) -1543 ENSMUSG00000025330.6 ENSMUSG00000025330 ENSMUST00000137440 Padi4 protein_coding Interval_58839 chr15 38502630 38502863 + 0 NA intron (ENSMUSG00000037458.15, intron 2 of 4) protein_coding-intron (ENSMUSG00000037458.15, intron 2 of 11) -8360 ENSMUSG00000037458.15 ENSMUSG00000037458 ENSMUST00000152833 Azin1 protein_coding Interval_155130 chr8 26880592 26880849 + 0 NA promoter-TSS (ENSMUSG00000100335.2) lincRNA-promoter-TSS (ENSMUSG00000100335.2) 1975 ENSMUSG00000100335.2 ENSMUSG00000100335 ENSMUST00000210263 2310008N11Rik lincRNA Interval_157047 chr8 64768924 64770375 + 0 NA intron (ENSMUSG00000031605.8, intron 5 of 13) protein_coding-intron (ENSMUSG00000031605.8, intron 5 of 14) -38590 ENSMUSG00000031604.10 ENSMUSG00000031604 ENSMUST00000141021 Msmo1 protein_coding Interval_98869 chr2 155673148 155673424 + 0 NA promoter-TSS (ENSMUSG00000038324.13) protein_coding-promoter-TSS (ENSMUSG00000038324.13) -20262 ENSMUSG00000088695.1 ENSMUSG00000088695 ENSMUST00000158070 Gm22334 snoRNA Interval_127101 chr5 100306019 100306480 + 0 NA intron (ENSMUSG00000085915.1, intron 1 of 4) unprocessed_pseudogene-intron (ENSMUSG00000085915.1, intron 1 of 4) 48870 ENSMUSG00000085915.1 ENSMUSG00000085915 ENSMUST00000150506 Gm8091 unprocessed_pseudogene Interval_97195 chr2 132179544 132181141 + 0 NA intron (ENSMUSG00000086756.1, intron 2 of 2) antisense-intron (ENSMUSG00000086756.1, intron 2 of 2) 35809 ENSMUSG00000086756.1 ENSMUSG00000086756 ENSMUST00000131603 Gm14051 antisense Interval_543 chr1 7124414 7126585 + 0 NA intron (ENSMUSG00000051285.17, intron 2 of 5) protein_coding-intron (ENSMUSG00000051285.17, intron 2 of 5) 11087 ENSMUSG00000098201.1 ENSMUSG00000098201 ENSMUST00000182051 Gm26983 processed_pseudogene Interval_116034 chr4 107128191 107128688 + 0 NA intron (ENSMUSG00000085304.1, intron 1 of 3) antisense-intron (ENSMUSG00000085304.1, intron 1 of 3) 1826 ENSMUSG00000085304.1 ENSMUSG00000085304 ENSMUST00000145510 Gm12802 antisense Interval_18687 chr10 89329972 89330486 + 0 NA intron (ENSMUSG00000035189.17, intron 1 of 6) protein_coding-intron (ENSMUSG00000035189.17, intron 1 of 10) -72639 ENSMUSG00000035189.17 ENSMUSG00000035189 ENSMUST00000180843 Ano4 protein_coding Interval_131810 chr5 140029526 140029750 + 0 NA TTS (ENSMUSG00000105453.1) TEC-TTS (ENSMUSG00000105453.1) 2538 ENSMUSG00000105453.1 ENSMUSG00000105453 ENSMUST00000198772 Gm43702 TEC Interval_151592 chr7 124605666 124606825 + 0 NA Intergenic Intergenic 102690 ENSMUSG00000086254.1 ENSMUSG00000086254 ENSMUST00000130240 3100003L05Rik lincRNA Interval_53897 chr14 63193252 63194281 + 0 NA promoter-TSS (ENSMUSG00000035121.6) protein_coding-promoter-TSS (ENSMUSG00000035121.6) -241 ENSMUSG00000035121.6 ENSMUSG00000035121 ENSMUST00000223723 Neil2 protein_coding Interval_124326 chr5 43981582 43983734 + 0 NA promoter-TSS (ENSMUSG00000048373.8) protein_coding-promoter-TSS (ENSMUSG00000048373.8) -879 ENSMUSG00000048373.8 ENSMUSG00000048373 ENSMUST00000199481 Fgfbp1 protein_coding Interval_122868 chr5 26498312 26498746 + 0 NA Intergenic Intergenic -5240 ENSMUSG00000029044.9 ENSMUSG00000029044 ENSMUST00000196508 4930584F24Rik lincRNA Interval_94021 chr2 80761987 80762372 + 0 NA Intergenic Intergenic 54590 ENSMUSG00000077404.1 ENSMUSG00000077404 ENSMUST00000104216 Gm25420 snoRNA Interval_138238 chr6 86525091 86527579 + 0 NA promoter-TSS (ENSMUSG00000051695.6) protein_coding-promoter-TSS (ENSMUSG00000051695.6) -14 ENSMUSG00000051695.6 ENSMUSG00000051695 ENSMUST00000053015 Pcbp1 protein_coding Interval_64059 chr16 6853848 6854324 + 0 NA intron (ENSMUSG00000008658.16, intron 4 of 11) protein_coding-intron (ENSMUSG00000008658.16, intron 3 of 14) -339661 ENSMUSG00000008658.16 ENSMUSG00000008658 ENSMUST00000231031 Rbfox1 protein_coding Interval_134244 chr6 23491734 23492027 + 0 NA intron (ENSMUSG00000017978.18, intron 9 of 29) protein_coding-intron (ENSMUSG00000017978.18, intron 8 of 29) -27866 ENSMUSG00000098877.1 ENSMUSG00000098877 ENSMUST00000185172 Gm27959 rRNA Interval_129701 chr5 121864054 121865002 + 0 NA intron (ENSMUSG00000042589.18, intron 2 of 2) protein_coding-intron (ENSMUSG00000042589.18, intron 22 of 22) 1535 ENSMUSG00000042589.18 ENSMUSG00000042589 ENSMUST00000125267 Cux2 protein_coding Interval_120241 chr4 144801694 144802305 + 0 NA Intergenic Intergenic 10162 ENSMUSG00000083998.1 ENSMUSG00000083998 ENSMUST00000117259 Prdx2-ps2 processed_pseudogene Interval_70005 chr17 4285440 4285986 + 0 NA Intergenic Intergenic -163611 ENSMUSG00000116615.1 ENSMUSG00000116615 ENSMUST00000231319 4930548J01Rik processed_transcript Interval_104939 chr3 79161783 79161980 + 0 NA intron (ENSMUSG00000062232.14, intron 3 of 4) protein_coding-intron (ENSMUSG00000062232.14, intron 3 of 3) -34493 ENSMUSG00000064693.1 ENSMUSG00000064693 ENSMUST00000082759 Gm24150 snRNA Interval_166543 chr9 60759415 60759960 + 0 NA intron (ENSMUSG00000095956.2, intron 2 of 3) lincRNA-intron (ENSMUSG00000095956.2, intron 2 of 3) 16567 ENSMUSG00000095956.2 ENSMUSG00000095956 ENSMUST00000178191 1700036A12Rik lincRNA Interval_84914 chr19 18726533 18727773 + 0 NA Intergenic Intergenic -5588 ENSMUSG00000064941.1 ENSMUSG00000064941 ENSMUST00000083007 Gm23238 snRNA Interval_147333 chr7 65901161 65901512 + 0 NA intron (ENSMUSG00000030513.14, intron 1 of 19) protein_coding-intron (ENSMUSG00000030513.14, intron 1 of 21) -39344 ENSMUSG00000093405.1 ENSMUSG00000093405 ENSMUST00000176744 Gm20684 bidirectional_promoter_lncRNA Interval_119978 chr4 141204473 141205504 + 0 NA TTS (ENSMUSG00000028920.9) protein_coding-TTS (ENSMUSG00000028920.9) -13658 ENSMUSG00000073733.4 ENSMUSG00000073733 ENSMUST00000151475 Cplane2 protein_coding Interval_43068 chr13 23581379 23582952 + 0 NA exon (ENSMUSG00000061482.7, exon 1 of 1) protein_coding-exon (ENSMUSG00000061482.7, exon 1 of 1) 567 ENSMUSG00000061482.7 ENSMUSG00000061482 ENSMUST00000102968 H4c4 protein_coding Interval_73856 chr17 44692799 44693238 + 0 NA intron (ENSMUSG00000039153.17, intron 4 of 6) protein_coding-intron (ENSMUSG00000039153.17, intron 4 of 7) -17204 ENSMUSG00000089849.1 ENSMUSG00000089849 ENSMUST00000161664 Runx2os2 antisense Interval_108844 chr3 132519494 132519902 + 0 NA Intergenic Intergenic 17967 ENSMUSG00000089510.1 ENSMUSG00000089510 ENSMUST00000158885 Gm25307 snRNA Interval_32372 chr11 107203985 107204314 + 0 NA Intergenic Intergenic 13055 ENSMUSG00000081360.1 ENSMUSG00000081360 ENSMUST00000119942 Gm11718 processed_pseudogene Interval_72300 chr17 29039447 29039797 + 0 NA promoter-TSS (ENSMUSG00000071172.13) protein_coding-promoter-TSS (ENSMUSG00000071172.13) 6949 ENSMUSG00000071172.13 ENSMUSG00000071172 ENSMUST00000233105 Srsf3 protein_coding Interval_118020 chr4 128179573 128179785 + 0 NA intron (ENSMUSG00000028804.20, intron 3 of 70) protein_coding-intron (ENSMUSG00000028804.20, intron 3 of 12) -12712 ENSMUSG00000087459.8 ENSMUSG00000087459 ENSMUST00000179945 Csmd2os antisense Interval_128219 chr5 111814870 111815461 + 0 NA Intergenic Intergenic 21778 ENSMUSG00000105376.4 ENSMUSG00000105376 ENSMUST00000200641 Gm36535 lincRNA Interval_83137 chr18 81972970 81973272 + 0 NA Intergenic Intergenic -7948 ENSMUSG00000077599.1 ENSMUSG00000077599 ENSMUST00000104411 Gm26012 snoRNA Interval_143984 chr7 18762025 18763798 + 0 NA Intergenic Intergenic 2053 ENSMUSG00000109234.1 ENSMUSG00000109234 ENSMUST00000208869 Gm44561 unprocessed_pseudogene Interval_102287 chr3 20593393 20593665 + 0 NA Intergenic Intergenic -87321 ENSMUSG00000102636.1 ENSMUSG00000102636 ENSMUST00000195457 Gm31466 lincRNA Interval_114119 chr4 63621933 63622274 + 0 NA intron (ENSMUSG00000058935.14, intron 1 of 4) protein_coding-intron (ENSMUSG00000058935.14, intron 1 of 4) 325 ENSMUSG00000058935.14 ENSMUSG00000058935 ENSMUST00000102862 Tex48 protein_coding Interval_55767 chr14 99833352 99833949 + 0 NA Intergenic Intergenic 2164 ENSMUSG00000087144.1 ENSMUSG00000087144 ENSMUST00000147698 Gm5958 processed_pseudogene Interval_63768 chr15 103308549 103309066 + 0 NA exon (ENSMUSG00000063234.5, exon 2 of 2) protein_coding-exon (ENSMUSG00000063234.5, exon 2 of 2) 1805 ENSMUSG00000063234.5 ENSMUSG00000063234 ENSMUST00000079824 Gpr84 protein_coding Interval_95759 chr2 115879591 115879809 + 0 NA intron (ENSMUSG00000027210.20, intron 3 of 6) protein_coding-intron (ENSMUSG00000027210.20, intron 9 of 11) -10833 ENSMUSG00000027210.20 ENSMUSG00000027210 ENSMUST00000138526 Meis2 protein_coding Interval_113947 chr4 61708918 61709571 + 0 NA Intergenic Intergenic 10403 ENSMUSG00000083304.1 ENSMUSG00000083304 ENSMUST00000121741 Mup-ps15 unprocessed_pseudogene Interval_141971 chr6 136207065 136207240 + 0 NA Intergenic Intergenic -33775 ENSMUSG00000030209.14 ENSMUSG00000030209 ENSMUST00000198283 Grin2b protein_coding Interval_108093 chr3 121460177 121461683 + 0 NA promoter-TSS (ENSMUSG00000039865.8) protein_coding-promoter-TSS (ENSMUSG00000039865.8) 3817 ENSMUSG00000053931.11 ENSMUSG00000053931 ENSMUST00000199499 Cnn3 protein_coding Interval_25625 chr11 50269246 50269575 + 0 NA intron (ENSMUSG00000050567.16, intron 1 of 3) protein_coding-intron (ENSMUSG00000050567.16, intron 1 of 4) 22394 ENSMUSG00000050567.16 ENSMUSG00000050567 ENSMUST00000059458 Maml1 protein_coding Interval_44450 chr13 44896390 44896743 + 0 NA TTS (ENSMUSG00000038518.15) protein_coding-TTS (ENSMUSG00000038518.15) -58283 ENSMUSG00000088189.1 ENSMUSG00000088189 ENSMUST00000157564 Gm22213 snoRNA Interval_131076 chr5 134951007 134951953 + 0 NA Intergenic Intergenic -4546 ENSMUSG00000047501.3 ENSMUSG00000047501 ENSMUST00000051401 Cldn4 protein_coding Interval_15343 chr10 44844722 44845132 + 0 NA Intergenic Intergenic -7687 ENSMUSG00000111671.1 ENSMUSG00000111671 ENSMUST00000214912 Gm6983 processed_pseudogene Interval_162745 chr9 8308691 8308922 + 0 NA Intergenic Intergenic 62020 ENSMUSG00000084747.1 ENSMUSG00000084747 ENSMUST00000122798 Mir1899 miRNA Interval_155547 chr8 34256874 34257604 + 0 NA Intergenic Intergenic 38737 ENSMUSG00000080434.1 ENSMUSG00000080434 ENSMUST00000116784 Gm23177 miRNA Interval_120654 chr4 149925757 149925951 + 0 NA intron (ENSMUSG00000039911.13, intron 1 of 1) protein_coding-intron (ENSMUSG00000039911.13, intron 1 of 2) -3383 ENSMUSG00000039911.13 ENSMUSG00000039911 ENSMUST00000135896 Spsb1 protein_coding Interval_1390 chr1 21255989 21257253 + 0 NA TTS (ENSMUSG00000025934.15) protein_coding-TTS (ENSMUSG00000025934.15) 3100 ENSMUSG00000025934.15 ENSMUSG00000025934 ENSMUST00000190711 Gsta3 protein_coding Interval_27243 chr11 64715120 64715299 + 0 NA Intergenic Intergenic 44818 ENSMUSG00000081756.1 ENSMUSG00000081756 ENSMUST00000121627 Gm12291 processed_pseudogene Interval_47577 chr13 89411139 89411428 + 0 NA Intergenic Intergenic 167136 ENSMUSG00000094463.2 ENSMUSG00000094463 ENSMUST00000178288 Gm8546 processed_pseudogene Interval_135546 chr6 40331313 40331824 + 0 NA intron (ENSMUSG00000029916.11, intron 2 of 2) protein_coding-intron (ENSMUSG00000029916.11, intron 2 of 15) 6060 ENSMUSG00000029916.11 ENSMUSG00000029916 ENSMUST00000201751 Agk protein_coding Interval_17928 chr10 80864961 80865175 + 0 NA intron (ENSMUSG00000035206.10, intron 8 of 12) protein_coding-intron (ENSMUSG00000035206.10, intron 8 of 14) -6780 ENSMUSG00000059406.8 ENSMUSG00000059406 ENSMUST00000105333 Tmprss9 protein_coding Interval_3338 chr1 57095525 57097298 + 0 NA Intergenic Intergenic -30929 ENSMUSG00000099945.1 ENSMUSG00000099945 ENSMUST00000185283 1700126A01Rik lincRNA Interval_70368 chr17 9151842 9152121 + 0 NA intron (ENSMUSG00000097049.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000097049.1, intron 1 of 2) 15855 ENSMUSG00000097049.1 ENSMUSG00000097049 ENSMUST00000181618 6530411M01Rik lincRNA Interval_49300 chr13 110429707 110429921 + 0 NA Intergenic Intergenic 33802 ENSMUSG00000021701.8 ENSMUSG00000021701 ENSMUST00000225156 Plk2 protein_coding Interval_152330 chr7 131895855 131896476 + 0 NA intron (ENSMUSG00000030849.18, intron 2 of 6) protein_coding-intron (ENSMUSG00000030849.18, intron 2 of 6) 36489 ENSMUSG00000109340.1 ENSMUSG00000109340 ENSMUST00000208929 Gm44548 processed_pseudogene Interval_4524 chr1 74787974 74788174 + 0 NA Intergenic Intergenic -5289 ENSMUSG00000026167.14 ENSMUSG00000026167 ENSMUST00000187238 Wnt10a protein_coding Interval_174150 chrX 136590455 136590999 + 0 NA promoter-TSS (ENSMUSG00000044550.11) protein_coding-promoter-TSS (ENSMUSG00000044550.11) -128 ENSMUSG00000044550.11 ENSMUSG00000044550 ENSMUST00000128040 Tceal3 protein_coding Interval_165197 chr9 45186752 45188293 + 0 NA intron (ENSMUSG00000032091.15, intron 2 of 12) protein_coding-intron (ENSMUSG00000032091.15, intron 2 of 12) -8244 ENSMUSG00000091996.8 ENSMUSG00000091996 ENSMUST00000171799 BC049352 protein_coding Interval_106485 chr3 96644934 96645843 + 0 NA promoter-TSS (ENSMUSG00000090210.7) protein_coding-promoter-TSS (ENSMUSG00000090210.7) 9555 ENSMUSG00000028102.15 ENSMUSG00000028102 ENSMUST00000147821 Pex11b protein_coding Interval_46815 chr13 71105340 71105663 + 0 NA Intergenic Intergenic -1588 ENSMUSG00000080580.1 ENSMUSG00000080580 ENSMUST00000116930 Mir466f-4 miRNA Interval_170836 chr9 111066954 111067169 + 0 NA Intergenic Intergenic 4472 ENSMUSG00000097529.1 ENSMUSG00000097529 ENSMUST00000180929 Rp31-ps19 processed_pseudogene Interval_11746 chr1 185154925 185156151 + 0 NA Intergenic Intergenic 63547 ENSMUSG00000104461.1 ENSMUSG00000104461 ENSMUST00000195649 Gm37662 lincRNA Interval_49465 chr13 112253390 112253593 + 0 NA Intergenic Intergenic 34298 ENSMUSG00000104438.1 ENSMUSG00000104438 ENSMUST00000192356 Gm37427 TEC Interval_28753 chr11 78094080 78095292 + 0 NA promoter-TSS (ENSMUSG00000037750.16) protein_coding-promoter-TSS (ENSMUSG00000037750.16) -14303 ENSMUSG00000020832.14 ENSMUSG00000020832 ENSMUST00000135154 Eral1 protein_coding Interval_64236 chr16 9469559 9469920 + 0 NA Intergenic Intergenic 310969 ENSMUSG00000116123.1 ENSMUSG00000116123 ENSMUST00000229655 Gm49451 lincRNA Interval_84557 chr19 12745416 12745655 + 0 NA Intergenic Intergenic 20097 ENSMUSG00000079415.2 ENSMUSG00000079415 ENSMUST00000112933 Cntf protein_coding Interval_52387 chr14 45518446 45518672 + 0 NA intron (ENSMUSG00000037712.16, intron 2 of 5) protein_coding-intron (ENSMUSG00000037712.16, intron 2 of 14) -11799 ENSMUSG00000115324.1 ENSMUSG00000115324 ENSMUST00000227827 4930527F14Rik bidirectional_promoter_lncRNA Interval_40513 chr12 105395966 105396304 + 0 NA TTS (ENSMUSG00000113314.1) lincRNA-TTS (ENSMUSG00000113314.1) -7884 ENSMUSG00000114181.1 ENSMUSG00000114181 ENSMUST00000222653 Gm46376 lincRNA Interval_53909 chr14 63313261 63314302 + 0 NA Intergenic Intergenic -3964 ENSMUSG00000114898.1 ENSMUSG00000114898 ENSMUST00000225064 Gm49390 lincRNA Interval_150629 chr7 112918463 112918981 + 0 NA Intergenic Intergenic -35240 ENSMUSG00000098132.1 ENSMUSG00000098132 ENSMUST00000182858 Rassf10 protein_coding Interval_111072 chr4 11624307 11625180 + 0 NA Intergenic Intergenic -9736 ENSMUSG00000086103.1 ENSMUSG00000086103 ENSMUST00000148576 Gm11832 antisense Interval_25745 chr11 51317158 51317601 + 0 NA intron (ENSMUSG00000063564.13, intron 2 of 28) protein_coding-intron (ENSMUSG00000063564.13, intron 2 of 28) 46944 ENSMUSG00000093734.1 ENSMUSG00000093734 ENSMUST00000177296 Gm25082 misc_RNA Interval_44094 chr13 40854302 40854913 + 0 NA Intergenic Intergenic 7868 ENSMUSG00000114560.1 ENSMUSG00000114560 ENSMUST00000223759 Gm35160 unprocessed_pseudogene Interval_172252 chrX 11998645 12001001 + 0 NA Intergenic Intergenic 15355 ENSMUSG00000081947.2 ENSMUSG00000081947 ENSMUST00000117924 Gm14512 processed_pseudogene Interval_66419 chr16 33751191 33751953 + 0 NA intron (ENSMUSG00000075254.12, intron 14 of 16) protein_coding-intron (ENSMUSG00000075254.12, intron 14 of 16) -42465 ENSMUSG00000022824.12 ENSMUSG00000022824 ENSMUST00000023520 Muc13 protein_coding Interval_51789 chr14 32205216 32205747 + 0 NA intron (ENSMUSG00000021911.16, intron 1 of 14) protein_coding-intron (ENSMUSG00000021911.16, intron 1 of 17) -3635 ENSMUSG00000013701.13 ENSMUSG00000013701 ENSMUST00000168813 Timm23 protein_coding Interval_136825 chr6 61020999 61021273 + 0 NA Intergenic Intergenic -3400 ENSMUSG00000108098.1 ENSMUSG00000108098 ENSMUST00000204855 Gm18838 processed_pseudogene Interval_131375 chr5 136790729 136791313 + 0 NA intron (ENSMUSG00000004415.15, intron 3 of 3) protein_coding-intron (ENSMUSG00000004415.15, intron 3 of 12) 47288 ENSMUSG00000004415.15 ENSMUSG00000004415 ENSMUST00000140245 Col26a1 protein_coding Interval_99209 chr2 158077407 158077638 + 0 NA exon (ENSMUSG00000027651.16, exon 7 of 7) protein_coding-exon (ENSMUSG00000027651.16, exon 7 of 7) 14275 ENSMUSG00000100860.1 ENSMUSG00000100860 ENSMUST00000186977 2010009K17Rik antisense Interval_80789 chr18 47083153 47083784 + 0 NA intron (ENSMUSG00000042705.9, intron 5 of 6) protein_coding-intron (ENSMUSG00000042705.9, intron 5 of 6) -28671 ENSMUSG00000117621.1 ENSMUSG00000117621 ENSMUST00000234633 Hspe1-rs1 protein_coding Interval_7555 chr1 132195265 132195943 + 0 NA intron (ENSMUSG00000079330.9, intron 1 of 4) protein_coding-intron (ENSMUSG00000079330.9, intron 1 of 3) -2484 ENSMUSG00000065435.1 ENSMUSG00000065435 ENSMUST00000083501 Mir135b miRNA Interval_94143 chr2 84658927 84660691 + 0 NA intron (ENSMUSG00000086598.9, intron 1 of 2) protein_coding-intron (ENSMUSG00000086598.9, intron 1 of 4) 730 ENSMUSG00000086598.9 ENSMUSG00000086598 ENSMUST00000133437 Btbd18 protein_coding Interval_28221 chr11 74465714 74466146 + 0 NA intron (ENSMUSG00000038807.19, intron 4 of 25) protein_coding-intron (ENSMUSG00000038807.19, intron 4 of 25) 103861 ENSMUSG00000058275.3 ENSMUSG00000058275 ENSMUST00000077794 Olfr412 protein_coding Interval_162399 chr8 128017196 128017553 + 0 NA Intergenic Intergenic 260851 ENSMUSG00000099326.1 ENSMUSG00000099326 ENSMUST00000184910 Mir21c miRNA Interval_84670 chr19 14883679 14884238 + 0 NA Intergenic Intergenic 76808 ENSMUSG00000063586.1 ENSMUSG00000063586 ENSMUST00000072982 Gm5513 processed_pseudogene Interval_46852 chr13 72520415 72521081 + 0 NA Intergenic Intergenic -48179 ENSMUSG00000113858.1 ENSMUSG00000113858 ENSMUST00000221407 Gm4057 processed_pseudogene Interval_173557 chrX 99331351 99332939 + 0 NA Intergenic Intergenic 86750 ENSMUSG00000085053.1 ENSMUSG00000085053 ENSMUST00000152025 Gm14809 lincRNA Interval_86551 chr19 41646899 41647386 + 0 NA intron (ENSMUSG00000025020.11, intron 10 of 11) protein_coding-intron (ENSMUSG00000025020.11, intron 11 of 36) 58491 ENSMUSG00000098286.1 ENSMUSG00000098286 ENSMUST00000183602 Mir8091 miRNA Interval_131284 chr5 136166624 136167105 + 0 NA exon (ENSMUSG00000039747.11, exon 2 of 2) protein_coding-exon (ENSMUSG00000039747.11, exon 2 of 2) 3769 ENSMUSG00000039747.11 ENSMUSG00000039747 ENSMUST00000198268 Orai2 protein_coding Interval_78136 chr18 9197260 9198410 + 0 NA Intergenic Intergenic -14328 ENSMUSG00000036904.6 ENSMUSG00000036904 ENSMUST00000041080 Fzd8 protein_coding Interval_118954 chr4 134681668 134682884 + 0 NA intron (ENSMUSG00000037306.13, intron 1 of 8) protein_coding-intron (ENSMUSG00000037306.13, intron 2 of 12) 21491 ENSMUSG00000037306.13 ENSMUSG00000037306 ENSMUST00000176606 Man1c1 protein_coding Interval_102046 chr3 16109737 16110121 + 0 NA Intergenic Intergenic 6014 ENSMUSG00000088874.1 ENSMUSG00000088874 ENSMUST00000158249 Gm25863 ribozyme Interval_72223 chr17 28669098 28669943 + 0 NA TTS (ENSMUSG00000036196.16) protein_coding-TTS (ENSMUSG00000036196.16) 20269 ENSMUSG00000036196.16 ENSMUSG00000036196 ENSMUST00000233213 Slc26a8 protein_coding Interval_49878 chr13 117548914 117549106 + 0 NA Intergenic Intergenic -53310 ENSMUSG00000021730.8 ENSMUSG00000021730 ENSMUST00000006991 Hcn1 protein_coding Interval_22688 chr11 13005140 13007157 + 0 NA Intergenic Intergenic 8482 ENSMUSG00000084055.1 ENSMUSG00000084055 ENSMUST00000117869 Gm12004 processed_pseudogene Interval_22924 chr11 17459985 17461292 + 0 NA Intergenic Intergenic -87648 ENSMUSG00000087833.1 ENSMUSG00000087833 ENSMUST00000157208 Gm23959 misc_RNA Interval_170887 chr9 111564070 111564483 + 0 NA intron (ENSMUSG00000032502.8, intron 9 of 9) protein_coding-intron (ENSMUSG00000032502.8, intron 10 of 10) 2853 ENSMUSG00000106232.1 ENSMUSG00000106232 ENSMUST00000197414 Gm43236 antisense Interval_118210 chr4 129549448 129550490 + 0 NA intron (ENSMUSG00000000409.14, intron 12 of 12) protein_coding-intron (ENSMUSG00000000409.14, intron 11 of 11) 7842 ENSMUSG00000099070.1 ENSMUSG00000099070 ENSMUST00000183371 Mir8119 miRNA Interval_152 JH584296.1 186557 187447 + 0 NA NA NA NA NA Interval_2926 chr1 50926464 50928195 + 0 NA promoter-TSS (ENSMUSG00000026109.14) protein_coding-promoter-TSS (ENSMUSG00000026109.14) 22885 ENSMUSG00000100671.1 ENSMUSG00000100671 ENSMUST00000185627 Gm28322 lincRNA Interval_71573 chr17 24632195 24633437 + 0 NA promoter-TSS (ENSMUSG00000002496.10) protein_coding-promoter-TSS (ENSMUSG00000002496.10) -5360 ENSMUSG00000041429.3 ENSMUSG00000041429 ENSMUST00000234888 Nthl1 protein_coding Interval_130407 chr5 127361039 127361577 + 0 NA intron (ENSMUSG00000034324.16, intron 2 of 8) protein_coding-intron (ENSMUSG00000034324.16, intron 2 of 8) 52291 ENSMUSG00000104971.1 ENSMUSG00000104971 ENSMUST00000196548 9430087B13Rik TEC Interval_168091 chr9 76202102 76203149 + 0 NA intron (ENSMUSG00000059383.14, intron 3 of 7) protein_coding-intron (ENSMUSG00000059383.14, intron 3 of 8) 11032 ENSMUSG00000059383.14 ENSMUSG00000059383 ENSMUST00000074880 Gfral protein_coding Interval_151878 chr7 127273131 127274450 + 0 NA exon (ENSMUSG00000049091.6, exon 1 of 1) protein_coding-exon (ENSMUSG00000049091.6, exon 1 of 1) 265 ENSMUSG00000049091.6 ENSMUSG00000049091 ENSMUST00000082428 Sephs2 protein_coding Interval_61234 chr15 80132556 80134213 + 0 NA intron (ENSMUSG00000022414.8, intron 1 of 1) protein_coding-intron (ENSMUSG00000022414.8, intron 1 of 10) 257 ENSMUSG00000022414.8 ENSMUSG00000022414 ENSMUST00000229320 Tab1 protein_coding Interval_20146 chr10 115259856 115260407 + 0 NA Intergenic Intergenic -2202 ENSMUSG00000087853.1 ENSMUSG00000087853 ENSMUST00000157228 Gm22794 misc_RNA Interval_67562 chr16 50828428 50828628 + 0 NA Intergenic Intergenic 45050 ENSMUSG00000092276.2 ENSMUSG00000092276 ENSMUST00000174511 1700116B05Rik lincRNA Interval_111928 chr4 32622647 32622961 + 0 NA intron (ENSMUSG00000028282.12, intron 1 of 10) protein_coding-intron (ENSMUSG00000028282.12, intron 1 of 10) 7331 ENSMUSG00000028282.12 ENSMUSG00000028282 ENSMUST00000108178 Casp8ap2 protein_coding Interval_3804 chr1 63180598 63183081 + 0 NA TTS (ENSMUSG00000046856.13) protein_coding-TTS (ENSMUSG00000046856.13) 2835 ENSMUSG00000064602.1 ENSMUSG00000064602 ENSMUST00000082668 Snora41 snoRNA Interval_66042 chr16 31156611 31156986 + 0 NA intron (ENSMUSG00000049076.12, intron 2 of 23) protein_coding-intron (ENSMUSG00000049076.12, intron 2 of 21) -1072 ENSMUSG00000116943.1 ENSMUSG00000116943 ENSMUST00000231868 Gm18237 processed_pseudogene Interval_95404 chr2 108471222 108471820 + 0 NA Intergenic Intergenic -24437 ENSMUSG00000083590.1 ENSMUSG00000083590 ENSMUST00000117368 Gm13916 processed_pseudogene Interval_131910 chr5 140744017 140744321 + 0 NA exon (ENSMUSG00000050022.16, exon 4 of 8) protein_coding-exon (ENSMUSG00000050022.16, exon 4 of 8) 20031 ENSMUSG00000050022.16 ENSMUSG00000050022 ENSMUST00000176035 Amz1 protein_coding Interval_89128 chr2 16991612 16991830 + 0 NA Intergenic Intergenic -11890 ENSMUSG00000082235.3 ENSMUSG00000082235 ENSMUST00000118730 Gm13326 processed_pseudogene Interval_60659 chr15 75990036 75990456 + 0 NA Intergenic Intergenic -7804 ENSMUSG00000098176.2 ENSMUSG00000098176 ENSMUST00000182172 Ccdc166 protein_coding Interval_71818 chr17 26285462 26285684 + 0 NA TTS (ENSMUSG00000024188.16) protein_coding-TTS (ENSMUSG00000024188.16) 1488 ENSMUSG00000084893.3 ENSMUSG00000084893 ENSMUST00000128900 Hba-ps4 unprocessed_pseudogene Interval_89710 chr2 24910228 24910864 + 0 NA intron (ENSMUSG00000036893.17, intron 1 of 4) protein_coding-intron (ENSMUSG00000036893.17, intron 1 of 25) -16680 ENSMUSG00000102875.1 ENSMUSG00000102875 ENSMUST00000192134 Gm37139 TEC Interval_6466 chr1 110767244 110767728 + 0 NA Intergenic Intergenic 167465 ENSMUSG00000099926.1 ENSMUSG00000099926 ENSMUST00000189583 Gm6693 processed_pseudogene Interval_172003 chr9 123397871 123398133 + 0 NA intron (ENSMUSG00000035202.8, intron 5 of 20) protein_coding-intron (ENSMUSG00000035202.8, intron 5 of 20) 31048 ENSMUSG00000035202.8 ENSMUSG00000035202 ENSMUST00000215087 Lars2 protein_coding Interval_114818 chr4 85801750 85802250 + 0 NA intron (ENSMUSG00000066113.16, intron 2 of 3) protein_coding-intron (ENSMUSG00000066113.16, intron 2 of 3) -107911 ENSMUSG00000088122.2 ENSMUSG00000088122 ENSMUST00000157497 Gm26069 misc_RNA Interval_101595 chr3 7501696 7502006 + 0 NA TTS (ENSMUSG00000088484.1) snoRNA-TTS (ENSMUSG00000088484.1) 169 ENSMUSG00000088484.1 ENSMUSG00000088484 ENSMUST00000157859 Gm23592 snoRNA Interval_101105 chr2 178013515 178013694 + 0 NA Intergenic Intergenic -9775 ENSMUSG00000074519.11 ENSMUSG00000074519 ENSMUST00000108926 Zfp971 protein_coding Interval_42933 chr13 21478547 21479723 + 0 NA intron (ENSMUSG00000114702.2, intron 1 of 2) processed_transcript-intron (ENSMUSG00000114702.2, intron 1 of 2) 164 ENSMUSG00000054931.7 ENSMUSG00000054931 ENSMUST00000225845 Zkscan4 protein_coding Interval_70082 chr17 5176308 5176951 + 0 NA intron (ENSMUSG00000069729.14, intron 4 of 19) protein_coding-intron (ENSMUSG00000069729.14, intron 4 of 18) -64519 ENSMUSG00000081783.2 ENSMUSG00000081783 ENSMUST00000122283 Gm15599 processed_pseudogene Interval_48876 chr13 104238370 104238806 + 0 NA intron (ENSMUSG00000021714.15, intron 1 of 7) protein_coding-intron (ENSMUSG00000021714.15, intron 5 of 9) 2713 ENSMUSG00000021714.15 ENSMUSG00000021714 ENSMUST00000224098 Cenpk protein_coding Interval_164153 chr9 32010905 32012123 + 0 NA Intergenic Intergenic -6054 ENSMUSG00000111771.1 ENSMUSG00000111771 ENSMUST00000216368 Gm47465 lincRNA Interval_141562 chr6 129330238 129330468 + 0 NA intron (ENSMUSG00000047720.7, intron 2 of 4) protein_coding-intron (ENSMUSG00000047720.7, intron 2 of 4) -3657 ENSMUSG00000047720.7 ENSMUSG00000047720 ENSMUST00000203159 Clec2m protein_coding Interval_83041 chr18 80698201 80698391 + 0 NA exon (ENSMUSG00000033016.16, exon 2 of 8) protein_coding-exon (ENSMUSG00000033016.16, exon 2 of 8) -6894 ENSMUSG00000118265.1 ENSMUSG00000118265 ENSMUST00000237404 Gm50211 antisense Interval_157090 chr8 65081425 65081618 + 0 NA Intergenic Intergenic 6488 ENSMUSG00000074302.1 ENSMUSG00000074302 ENSMUST00000098716 Gm10663 protein_coding Interval_102850 chr3 32240647 32241104 + 0 NA Intergenic Intergenic -19458 ENSMUSG00000103643.1 ENSMUSG00000103643 ENSMUST00000192855 Gm37770 processed_pseudogene Interval_173682 chrX 101908085 101908563 + 0 NA intron (ENSMUSG00000079481.11, intron 1 of 7) protein_coding-intron (ENSMUSG00000079481.11, intron 1 of 7) 4400 ENSMUSG00000087712.1 ENSMUSG00000087712 ENSMUST00000157087 Gm25828 snRNA Interval_16114 chr10 60811693 60812574 + 0 NA exon (ENSMUSG00000112592.1, exon 1 of 1) TEC-exon (ENSMUSG00000112592.1, exon 1 of 1) 2190 ENSMUSG00000112592.1 ENSMUSG00000112592 ENSMUST00000218180 Gm19972 TEC Interval_153285 chr7 143288731 143289821 + 0 NA exon (ENSMUSG00000101609.2, exon 1 of 1) antisense-exon (ENSMUSG00000101609.2, exon 1 of 1) -4656 ENSMUSG00000099240.1 ENSMUSG00000099240 ENSMUST00000184971 Gm27539 misc_RNA Interval_52811 chr14 50823038 50823749 + 0 NA TTS (ENSMUSG00000006281.8) protein_coding-TTS (ENSMUSG00000006281.8) 3114 ENSMUSG00000036023.6 ENSMUSG00000036023 ENSMUST00000228872 Parp2 protein_coding Interval_152197 chr7 130588615 130588800 + 0 NA intron (ENSMUSG00000030852.18, intron 1 of 20) protein_coding-intron (ENSMUSG00000030852.18, intron 1 of 20) -49499 ENSMUSG00000040331.16 ENSMUSG00000040331 ENSMUST00000161414 Nsmce4a protein_coding Interval_164652 chr9 40342867 40344078 + 0 NA promoter-TSS (ENSMUSG00000111271.1) sense_intronic-promoter-TSS (ENSMUSG00000111271.1) -534 ENSMUSG00000111271.1 ENSMUSG00000111271 ENSMUST00000217414 Gm48127 sense_intronic Interval_116521 chr4 115011958 115012207 + 0 NA intron (ENSMUSG00000028718.16, intron 4 of 5) protein_coding-intron (ENSMUSG00000028718.16, intron 8 of 16) 5321 ENSMUSG00000028718.16 ENSMUSG00000028718 ENSMUST00000144316 Stil protein_coding Interval_51477 chr14 27978167 27978421 + 0 NA intron (ENSMUSG00000040640.11, intron 7 of 7) protein_coding-intron (ENSMUSG00000040640.11, intron 7 of 15) -102077 ENSMUSG00000109849.1 ENSMUSG00000109849 ENSMUST00000211470 Gm45645 antisense Interval_120877 chr4 151223392 151223639 + 0 NA intron (ENSMUSG00000014592.21, intron 6 of 24) protein_coding-intron (ENSMUSG00000014592.21, intron 6 of 23) 133945 ENSMUSG00000078491.2 ENSMUSG00000078491 ENSMUST00000105667 Gm13090 protein_coding Interval_150591 chr7 112688428 112689073 + 0 NA intron (ENSMUSG00000055320.18, intron 1 of 13) protein_coding-intron (ENSMUSG00000055320.18, intron 1 of 13) -8669 ENSMUSG00000085945.3 ENSMUSG00000085945 ENSMUST00000211302 2310014F06Rik bidirectional_promoter_lncRNA Interval_171435 chr9 118323540 118324274 + 0 NA Intergenic Intergenic 36121 ENSMUSG00000084608.1 ENSMUSG00000084608 ENSMUST00000122659 Gm22198 misc_RNA Interval_141107 chr6 125030359 125031797 + 0 NA exon (ENSMUSG00000038346.18, exon 1 of 4) protein_coding-exon (ENSMUSG00000038346.18, exon 1 of 4) -8738 ENSMUSG00000108037.2 ENSMUSG00000108037 ENSMUST00000140883 Gm44597 processed_transcript Interval_119657 chr4 139044433 139044899 + 0 NA intron (ENSMUSG00000041143.16, intron 14 of 16) protein_coding-intron (ENSMUSG00000041143.16, intron 13 of 15) 30904 ENSMUSG00000028747.10 ENSMUSG00000028747 ENSMUST00000068036 Htr6 protein_coding Interval_36635 chr12 51671267 51673299 + 0 NA intron (ENSMUSG00000020954.16, intron 1 of 15) protein_coding-intron (ENSMUSG00000020954.16, intron 1 of 17) -18750 ENSMUSG00000020955.9 ENSMUSG00000020955 ENSMUST00000021338 Ap4s1 protein_coding Interval_148839 chr7 89210359 89211100 + 0 NA intron (ENSMUSG00000039428.11, intron 3 of 5) protein_coding-intron (ENSMUSG00000039428.11, intron 5 of 14) 6368 ENSMUSG00000109576.1 ENSMUSG00000109576 ENSMUST00000208963 Gm44704 TEC Interval_166567 chr9 60964699 60966627 + 0 NA Intergenic Intergenic 46440 ENSMUSG00000111444.1 ENSMUSG00000111444 ENSMUST00000216374 Gm47923 lincRNA Interval_82863 chr18 77574201 77574403 + 0 NA Intergenic Intergenic 60862 ENSMUSG00000117855.1 ENSMUSG00000117855 ENSMUST00000236419 Gm50197 processed_pseudogene Interval_145247 chr7 30885117 30885385 + 0 NA exon (ENSMUSG00000100029.1, exon 1 of 2) lincRNA-exon (ENSMUSG00000100029.1, exon 1 of 2) 220 ENSMUSG00000100029.1 ENSMUSG00000100029 ENSMUST00000189744 D7Ertd128e lincRNA Interval_135127 chr6 35995648 35996406 + 0 NA Intergenic Intergenic 20697 ENSMUSG00000077246.1 ENSMUSG00000077246 ENSMUST00000104058 Gm23273 snoRNA Interval_160134 chr8 106644305 106646038 + 0 NA intron (ENSMUSG00000000303.12, intron 2 of 16) protein_coding-intron (ENSMUSG00000000303.12, intron 2 of 15) -37944 ENSMUSG00000041949.6 ENSMUSG00000041949 ENSMUST00000211979 Tango6 protein_coding Interval_151007 chr7 117593528 117594233 + 0 NA intron (ENSMUSG00000030657.11, intron 5 of 6) protein_coding-intron (ENSMUSG00000030657.11, intron 5 of 11) 118388 ENSMUSG00000030657.11 ENSMUSG00000030657 ENSMUST00000161889 Xylt1 protein_coding Interval_11332 chr1 181000399 181001485 + 0 NA intron (ENSMUSG00000038776.13, intron 2 of 3) protein_coding-intron (ENSMUSG00000038776.13, intron 2 of 8) -4772 ENSMUSG00000038776.13 ENSMUSG00000038776 ENSMUST00000147585 Ephx1 protein_coding Interval_128128 chr5 111170283 111171104 + 0 NA intron (ENSMUSG00000033209.17, intron 5 of 22) protein_coding-intron (ENSMUSG00000033209.17, intron 5 of 23) 12382 ENSMUSG00000106153.1 ENSMUSG00000106153 ENSMUST00000198098 Gm43677 TEC Interval_119281 chr4 136630023 136631026 + 0 NA intron (ENSMUSG00000070683.7, intron 4 of 7) protein_coding-intron (ENSMUSG00000070683.7, intron 4 of 7) 7903 ENSMUSG00000070683.7 ENSMUSG00000070683 ENSMUST00000178843 Lactbl1 protein_coding Interval_82898 chr18 78600946 78602310 + 0 NA Intergenic Intergenic -4686 ENSMUSG00000024552.16 ENSMUSG00000024552 ENSMUST00000235389 Slc14a2 protein_coding Interval_98185 chr2 149595350 149595574 + 0 NA Intergenic Intergenic -29177 ENSMUSG00000089270.1 ENSMUSG00000089270 ENSMUST00000158645 Gm24551 snoRNA Interval_149338 chr7 97535089 97537002 + 0 NA TTS (ENSMUSG00000025133.9) protein_coding-TTS (ENSMUSG00000025133.9) 735 ENSMUSG00000025133.9 ENSMUSG00000025133 ENSMUST00000206843 Ints4 protein_coding Interval_11411 chr1 181812768 181813022 + 0 NA promoter-TSS (ENSMUSG00000047369.17) protein_coding-promoter-TSS (ENSMUSG00000047369.17) 805 ENSMUSG00000064970.1 ENSMUSG00000064970 ENSMUST00000083036 Gm23690 snRNA Interval_82803 chr18 77126915 77127646 + 0 NA intron (ENSMUSG00000025423.16, intron 7 of 14) protein_coding-intron (ENSMUSG00000025423.16, intron 6 of 12) 59083 ENSMUSG00000073532.3 ENSMUSG00000073532 ENSMUST00000097520 Gm7276 bidirectional_promoter_lncRNA Interval_86207 chr19 37814004 37814688 + 0 NA Intergenic Intergenic 30080 ENSMUSG00000117939.1 ENSMUSG00000117939 ENSMUST00000236017 Gm9067 processed_pseudogene Interval_133601 chr6 7448083 7448595 + 0 NA Intergenic Intergenic 72372 ENSMUSG00000107517.1 ENSMUSG00000107517 ENSMUST00000203145 Gm44046 TEC Interval_45953 chr13 59618261 59618568 + 0 NA TTS (ENSMUSG00000021555.15) protein_coding-TTS (ENSMUSG00000021555.15) 15105 ENSMUSG00000114535.1 ENSMUSG00000114535 ENSMUST00000225230 Gm47246 TEC Interval_125740 chr5 73703304 73704865 + 0 NA Intergenic Intergenic 44823 ENSMUSG00000029155.16 ENSMUSG00000029155 ENSMUST00000178631 Spata18 protein_coding Interval_48488 chr13 99391368 99391608 + 0 NA intron (ENSMUSG00000041632.7, intron 4 of 5) protein_coding-intron (ENSMUSG00000041632.7, intron 4 of 10) 21176 ENSMUSG00000097828.2 ENSMUSG00000097828 ENSMUST00000225937 6430562O15Rik processed_transcript Interval_48833 chr13 103821214 103821724 + 0 NA intron (ENSMUSG00000021709.14, intron 26 of 26) protein_coding-intron (ENSMUSG00000021709.14, intron 25 of 25) -52121 ENSMUSG00000032621.8 ENSMUSG00000032621 ENSMUST00000211139 Srek1 protein_coding Interval_118989 chr4 134879417 134880295 + 0 NA promoter-TSS (ENSMUSG00000028825.7) protein_coding-promoter-TSS (ENSMUSG00000028825.7) 46 ENSMUSG00000028825.7 ENSMUSG00000028825 ENSMUST00000136163 Rhd protein_coding Interval_8544 chr1 141250505 141250728 + 0 NA Intergenic Intergenic 6541 ENSMUSG00000095238.2 ENSMUSG00000095238 ENSMUST00000179202 Gm4845 processed_pseudogene Interval_166239 chr9 57712175 57712471 + 0 NA intron (ENSMUSG00000038957.13, intron 1 of 5) protein_coding-intron (ENSMUSG00000038957.13, intron 1 of 6) 3756 ENSMUSG00000038957.13 ENSMUSG00000038957 ENSMUST00000142807 Edc3 protein_coding Interval_33644 chr11 117712933 117714023 + 0 NA intron (ENSMUSG00000025571.13, intron 3 of 20) protein_coding-intron (ENSMUSG00000025571.13, intron 3 of 21) -35753 ENSMUSG00000025571.13 ENSMUSG00000025571 ENSMUST00000141287 Tnrc6c protein_coding Interval_165067 chr9 44267410 44269343 + 0 NA promoter-TSS (ENSMUSG00000032109.15) protein_coding-promoter-TSS (ENSMUSG00000032109.15) -1845 ENSMUSG00000032109.15 ENSMUSG00000032109 ENSMUST00000213803 Nlrx1 protein_coding Interval_62258 chr15 89234133 89234433 + 0 NA intron (ENSMUSG00000036561.9, intron 1 of 24) protein_coding-intron (ENSMUSG00000036561.9, intron 1 of 6) 22682 ENSMUSG00000036561.9 ENSMUSG00000036561 ENSMUST00000227011 Ppp6r2 protein_coding Interval_69015 chr16 90137394 90138793 + 0 NA intron (ENSMUSG00000002489.16, intron 1 of 11) protein_coding-intron (ENSMUSG00000002489.16, intron 1 of 11) -25087 ENSMUSG00000116553.1 ENSMUSG00000116553 ENSMUST00000231626 Gm7307 processed_pseudogene Interval_93272 chr2 71615787 71616360 + 0 NA Intergenic Intergenic -70123 ENSMUSG00000023391.8 ENSMUSG00000023391 ENSMUST00000134249 Dlx2 protein_coding Interval_85151 chr19 23177484 23177700 + 0 NA Intergenic Intergenic 28161 ENSMUSG00000080626.1 ENSMUSG00000080626 ENSMUST00000116976 Mir1192 miRNA Interval_27789 chr11 70007043 70008133 + 0 NA TTS (ENSMUSG00000020888.16) protein_coding-TTS (ENSMUSG00000020888.16) -4455 ENSMUSG00000065534.1 ENSMUSG00000065534 ENSMUST00000083600 Mir324 miRNA Interval_130572 chr5 128952678 128954656 + 0 NA promoter-TSS (ENSMUSG00000029420.14) protein_coding-promoter-TSS (ENSMUSG00000029420.14) 54879 ENSMUSG00000029428.13 ENSMUSG00000029428 ENSMUST00000199813 Stx2 protein_coding Interval_67236 chr16 44643843 44644365 + 0 NA Intergenic Intergenic -80253 ENSMUSG00000036208.13 ENSMUSG00000036208 ENSMUST00000132610 Nepro protein_coding Interval_51936 chr14 34080282 34080980 + 0 NA intron (ENSMUSG00000095493.2, intron 1 of 4) protein_coding-intron (ENSMUSG00000095493.2, intron 1 of 4) -4122 ENSMUSG00000115489.1 ENSMUSG00000115489 ENSMUST00000227780 Gm49129 processed_pseudogene Interval_48530 chr13 99858562 99860001 + 0 NA Intergenic Intergenic 41810 ENSMUSG00000021647.7 ENSMUSG00000021647 ENSMUST00000224142 Cartpt protein_coding Interval_97852 chr2 144441202 144441854 + 0 NA Intergenic Intergenic -22867 ENSMUSG00000083674.3 ENSMUSG00000083674 ENSMUST00000137929 Zfp133-ps transcribed_unitary_pseudogene Interval_88818 chr2 11431208 11431763 + 0 NA Intergenic Intergenic 11261 ENSMUSG00000082314.2 ENSMUSG00000082314 ENSMUST00000117854 Gm13296 processed_pseudogene Interval_140846 chr6 122315106 122316373 + 0 NA intron (ENSMUSG00000007458.14, intron 4 of 5) protein_coding-intron (ENSMUSG00000007458.14, intron 5 of 6) 6740 ENSMUSG00000007458.14 ENSMUSG00000007458 ENSMUST00000123093 M6pr protein_coding Interval_2983 chr1 51878969 51880140 + 0 NA promoter-TSS (ENSMUSG00000100313.1) sense_intronic-promoter-TSS (ENSMUSG00000100313.1) 54 ENSMUSG00000100313.1 ENSMUSG00000100313 ENSMUST00000186817 Gm28323 sense_intronic Interval_66553 chr16 35055978 35057029 + 0 NA intron (ENSMUSG00000035376.10, intron 1 of 3) protein_coding-intron (ENSMUSG00000035376.10, intron 3 of 6) 7888 ENSMUSG00000035376.10 ENSMUSG00000035376 ENSMUST00000231556 Hacd2 protein_coding Interval_17025 chr10 70547079 70547700 + 0 NA intron (ENSMUSG00000043259.15, intron 10 of 13) protein_coding-intron (ENSMUSG00000043259.15, intron 10 of 13) -42141 ENSMUSG00000112273.1 ENSMUSG00000112273 ENSMUST00000219398 Gm29783 processed_pseudogene Interval_94737 chr2 93885901 93886508 + 0 NA Intergenic Intergenic -29472 ENSMUSG00000075023.11 ENSMUSG00000075023 ENSMUST00000128995 Accsl protein_coding Interval_110580 chr4 4166751 4167161 + 0 NA intron (ENSMUSG00000085996.1, intron 1 of 1) processed_transcript-intron (ENSMUSG00000085996.1, intron 1 of 1) -28137 ENSMUSG00000045573.9 ENSMUSG00000045573 ENSMUST00000133567 Penk protein_coding Interval_148275 chr7 80227058 80227340 + 0 NA TTS (ENSMUSG00000030539.13) protein_coding-TTS (ENSMUSG00000030539.13) 5606 ENSMUSG00000030538.15 ENSMUSG00000030538 ENSMUST00000206618 Cib1 protein_coding Interval_21651 chr11 3471401 3473211 + 0 NA promoter-TSS (ENSMUSG00000081059.3) processed_pseudogene-promoter-TSS (ENSMUSG00000081059.3) -929 ENSMUSG00000081059.3 ENSMUSG00000081059 ENSMUST00000120551 Gm11945 processed_pseudogene Interval_165667 chr9 50791397 50791614 + 0 NA intron (ENSMUSG00000032059.13, intron 5 of 13) protein_coding-intron (ENSMUSG00000032059.13, intron 6 of 14) -10564 ENSMUSG00000032059.13 ENSMUSG00000032059 ENSMUST00000162596 Alg9 protein_coding Interval_96499 chr2 125115718 125115934 + 0 NA intron (ENSMUSG00000027201.16, intron 2 of 18) protein_coding-intron (ENSMUSG00000027201.16, intron 2 of 15) 7800 ENSMUSG00000027201.16 ENSMUSG00000027201 ENSMUST00000149911 Myef2 protein_coding Interval_153661 chr8 4356018 4356917 + 0 NA intron (ENSMUSG00000023235.14, intron 4 of 5) protein_coding-intron (ENSMUSG00000023235.14, intron 4 of 5) 6187 ENSMUSG00000108818.1 ENSMUSG00000108818 ENSMUST00000208836 Gm44869 processed_pseudogene Interval_63592 chr15 102235171 102236206 + 0 NA exon (ENSMUSG00000001288.15, exon 10 of 10) protein_coding-exon (ENSMUSG00000001288.15, exon 10 of 10) -3780 ENSMUSG00000001281.10 ENSMUSG00000001281 ENSMUST00000127014 Itgb7 protein_coding Interval_44227 chr13 42469995 42470183 + 0 NA Intergenic Intergenic 2688 ENSMUSG00000113000.1 ENSMUSG00000113000 ENSMUST00000222369 Gm6049 processed_pseudogene Interval_71197 chr17 21083926 21084257 + 0 NA Intergenic Intergenic -3433 ENSMUSG00000093453.1 ENSMUSG00000093453 ENSMUST00000176131 Vmn1r-ps146 unprocessed_pseudogene Interval_169627 chr9 99532851 99533133 + 0 NA intron (ENSMUSG00000032468.11, intron 5 of 10) protein_coding-intron (ENSMUSG00000032468.11, intron 6 of 21) 35671 ENSMUSG00000032468.11 ENSMUSG00000032468 ENSMUST00000191370 Armc8 protein_coding Interval_17491 chr10 77215595 77216159 + 0 NA Intergenic Intergenic 43346 ENSMUSG00000078444.3 ENSMUSG00000078444 ENSMUST00000105408 Gm10941 bidirectional_promoter_lncRNA Interval_12903 chr10 7904103 7904813 + 0 NA Intergenic Intergenic 51435 ENSMUSG00000015755.16 ENSMUSG00000015755 ENSMUST00000130322 Tab2 protein_coding Interval_67381 chr16 48252680 48252873 + 0 NA Intergenic Intergenic -9038 ENSMUSG00000116756.1 ENSMUSG00000116756 ENSMUST00000232184 Gm49770 processed_pseudogene Interval_135581 chr6 40842937 40843278 + 0 NA intron (ENSMUSG00000102802.3, intron 34 of 46) protein_coding-intron (ENSMUSG00000102802.3, intron 34 of 46) 44387 ENSMUSG00000029885.3 ENSMUSG00000029885 ENSMUST00000031937 Moxd2 protein_coding Interval_84258 chr19 9058313 9059178 + 0 NA intron (ENSMUSG00000069833.13, intron 5 of 5) protein_coding-intron (ENSMUSG00000069833.13, intron 5 of 5) 29213 ENSMUSG00000024653.2 ENSMUSG00000024653 ENSMUST00000025554 Scgb1a1 protein_coding Interval_145696 chr7 37480059 37480317 + 0 NA promoter-TSS (ENSMUSG00000043456.17) protein_coding-promoter-TSS (ENSMUSG00000043456.17) -12766 ENSMUSG00000108790.1 ENSMUSG00000108790 ENSMUST00000205574 Gm44806 TEC Interval_96686 chr2 127142881 127143804 + 0 NA promoter-TSS (ENSMUSG00000074825.4) protein_coding-promoter-TSS (ENSMUSG00000074825.4) -752 ENSMUSG00000074825.4 ENSMUSG00000074825 ENSMUST00000154021 Itpripl1 protein_coding Interval_160925 chr8 115114292 115114637 + 0 NA intron (ENSMUSG00000004637.15, intron 8 of 8) protein_coding-intron (ENSMUSG00000004637.15, intron 8 of 8) -61551 ENSMUSG00000088428.1 ENSMUSG00000088428 ENSMUST00000157803 Gm22556 rRNA Interval_107298 chr3 105546399 105546891 + 0 NA intron (ENSMUSG00000040896.16, intron 2 of 4) protein_coding-intron (ENSMUSG00000040896.16, intron 1 of 6) 43738 ENSMUSG00000105753.1 ENSMUSG00000105753 ENSMUST00000200070 Gm43847 sense_intronic Interval_169101 chr9 92499436 92500174 + 0 NA Intergenic Intergenic 27903 ENSMUSG00000077400.1 ENSMUSG00000077400 ENSMUST00000104212 Gm25417 snoRNA Interval_140638 chr6 120259339 120259839 + 0 NA intron (ENSMUSG00000041372.10, intron 1 of 19) protein_coding-intron (ENSMUSG00000041372.10, intron 1 of 19) 34970 ENSMUSG00000041372.10 ENSMUSG00000041372 ENSMUST00000212457 B4galnt3 protein_coding Interval_114997 chr4 88287411 88288502 + 0 NA intron (ENSMUSG00000038368.16, intron 1 of 4) protein_coding-intron (ENSMUSG00000038368.16, intron 18 of 43) -112394 ENSMUSG00000038368.16 ENSMUSG00000038368 ENSMUST00000107147 Focad protein_coding Interval_30497 chr11 94748063 94749528 + 0 NA Intergenic Intergenic 7013 ENSMUSG00000020870.7 ENSMUSG00000020870 ENSMUST00000188741 Cdc34b protein_coding Interval_14603 chr10 36917666 36918724 + 0 NA Intergenic Intergenic -73571 ENSMUSG00000019777.16 ENSMUSG00000019777 ENSMUST00000123010 Hdac2 protein_coding Interval_58333 chr15 32546256 32546768 + 0 NA intron (ENSMUSG00000022231.10, intron 6 of 7) protein_coding-intron (ENSMUSG00000022231.10, intron 6 of 22) 76993 ENSMUSG00000115063.1 ENSMUSG00000115063 ENSMUST00000227807 4930465K09Rik antisense Interval_102841 chr3 32049252 32050342 + 0 NA intron (ENSMUSG00000037610.15, intron 2 of 6) protein_coding-intron (ENSMUSG00000037610.15, intron 1 of 4) 95033 ENSMUSG00000103539.1 ENSMUSG00000103539 ENSMUST00000194517 Gm37834 TEC Interval_86290 chr19 38423955 38424225 + 0 NA Intergenic Intergenic 28049 ENSMUSG00000044026.3 ENSMUSG00000044026 ENSMUST00000236865 Slc35g1 protein_coding Interval_83898 chr19 5440665 5441197 + 0 NA Intergenic Intergenic -1410 ENSMUSG00000117845.1 ENSMUSG00000117845 ENSMUST00000235672 Gm31070 processed_pseudogene Interval_119592 chr4 138578119 138579143 + 0 NA exon (ENSMUSG00000028753.12, exon 17 of 22) protein_coding-exon (ENSMUSG00000028753.12, exon 17 of 22) 9098 ENSMUSG00000088589.1 ENSMUSG00000088589 ENSMUST00000157964 Gm22961 snRNA Interval_169080 chr9 91842038 91842226 + 0 NA Intergenic Intergenic 2362 ENSMUSG00000087871.1 ENSMUSG00000087871 ENSMUST00000157246 Gm26101 snRNA Interval_128229 chr5 111878600 111879535 + 0 NA Intergenic Intergenic 65168 ENSMUSG00000106060.1 ENSMUSG00000106060 ENSMUST00000197648 Gm42488 lincRNA Interval_97076 chr2 131044387 131044728 + 0 NA Intergenic Intergenic -3100 ENSMUSG00000027316.15 ENSMUSG00000027316 ENSMUST00000110235 Gfra4 protein_coding Interval_136411 chr6 54211738 54211950 + 0 NA intron (ENSMUSG00000004633.17, intron 3 of 4) protein_coding-intron (ENSMUSG00000004633.17, intron 3 of 12) -34161 ENSMUSG00000080205.2 ENSMUSG00000080205 ENSMUST00000112504 Gm15526 processed_pseudogene Interval_121199 chr4 153992809 153994038 + 0 NA intron (ENSMUSG00000039523.16, intron 4 of 14) protein_coding-intron (ENSMUSG00000039523.16, intron 13 of 21) 4956 ENSMUSG00000039523.16 ENSMUSG00000039523 ENSMUST00000155414 Cep104 protein_coding Interval_170401 chr9 107684974 107685793 + 0 NA promoter-TSS (ENSMUSG00000034684.12) protein_coding-promoter-TSS (ENSMUSG00000034684.12) -622 ENSMUSG00000034684.12 ENSMUSG00000034684 ENSMUST00000195023 Sema3f protein_coding Interval_50719 chr14 18538737 18539356 + 0 NA Intergenic Intergenic 6086 ENSMUSG00000114529.1 ENSMUSG00000114529 ENSMUST00000224515 Gm4939 processed_pseudogene Interval_170181 chr9 105987700 105988891 + 0 NA Intergenic Intergenic -13423 ENSMUSG00000084714.1 ENSMUSG00000084714 ENSMUST00000122765 Gm24631 snRNA Interval_30303 chr11 93264019 93264212 + 0 NA intron (ENSMUSG00000056158.14, intron 2 of 8) protein_coding-intron (ENSMUSG00000056158.14, intron 3 of 9) 149209 ENSMUSG00000064743.1 ENSMUSG00000064743 ENSMUST00000082809 Gm24856 snRNA Interval_39330 chr12 86775331 86775765 + 0 NA Intergenic Intergenic -34409 ENSMUSG00000088403.1 ENSMUSG00000088403 ENSMUST00000157778 Gm25888 misc_RNA Interval_21544 chr10 129607941 129608418 + 0 NA exon (ENSMUSG00000052012.6, exon 1 of 1) protein_coding-exon (ENSMUSG00000052012.6, exon 1 of 1) 4391 ENSMUSG00000052012.6 ENSMUSG00000052012 ENSMUST00000037071 Olfr796 protein_coding Interval_72769 chr17 32057499 32058465 + 0 NA promoter-TSS (ENSMUSG00000058392.13) protein_coding-promoter-TSS (ENSMUSG00000058392.13) 21572 ENSMUSG00000058392.13 ENSMUSG00000058392 ENSMUST00000126602 Rrp1b protein_coding Interval_26354 chr11 57165623 57166738 + 0 NA intron (ENSMUSG00000020524.16, intron 2 of 15) protein_coding-intron (ENSMUSG00000020524.16, intron 2 of 15) -10338 ENSMUSG00000020524.16 ENSMUSG00000020524 ENSMUST00000173531 Gria1 protein_coding Interval_115319 chr4 96184500 96185322 + 0 NA Intergenic Intergenic 5332 ENSMUSG00000082681.1 ENSMUSG00000082681 ENSMUST00000122430 Cyp2j7-ps1 unprocessed_pseudogene Interval_52730 chr14 49141170 49143239 + 0 NA Intergenic Intergenic -19502 ENSMUSG00000115737.1 ENSMUSG00000115737 ENSMUST00000227008 Rpl19-ps3 transcribed_processed_pseudogene Interval_131803 chr5 139978682 139979717 + 0 NA Intergenic Intergenic -15408 ENSMUSG00000106090.1 ENSMUSG00000106090 ENSMUST00000196164 Gm43704 processed_pseudogene Interval_35123 chr12 17436333 17437133 + 0 NA intron (ENSMUSG00000113246.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000113246.1, intron 1 of 2) 115 ENSMUSG00000113246.1 ENSMUSG00000113246 ENSMUST00000220527 Gm36752 lincRNA Interval_89961 chr2 26864708 26864991 + 0 NA intron (ENSMUSG00000015787.15, intron 1 of 5) protein_coding-intron (ENSMUSG00000015787.15, intron 1 of 5) -8051 ENSMUSG00000015787.15 ENSMUSG00000015787 ENSMUST00000102900 Abo protein_coding Interval_123346 chr5 31598630 31599427 + 0 NA intron (ENSMUSG00000106918.3, intron 1 of 1) processed_transcript-intron (ENSMUSG00000105617.4, intron 1 of 2) 295 ENSMUSG00000106918.3 ENSMUSG00000106918 ENSMUST00000202690 Mrpl33 protein_coding Interval_25795 chr11 51768561 51768948 + 0 NA intron (ENSMUSG00000020386.5, intron 1 of 4) protein_coding-intron (ENSMUSG00000020386.5, intron 1 of 6) 5060 ENSMUSG00000020386.5 ENSMUSG00000020386 ENSMUST00000136363 Sar1b protein_coding Interval_80540 chr18 43597233 43597508 + 0 NA intron (ENSMUSG00000024502.10, intron 1 of 1) protein_coding-intron (ENSMUSG00000024502.10, intron 1 of 21) -56759 ENSMUSG00000024502.10 ENSMUSG00000024502 ENSMUST00000237069 Jakmip2 protein_coding Interval_118002 chr4 127795662 127796059 + 0 NA Intergenic Intergenic 16313 ENSMUSG00000087510.1 ENSMUSG00000087510 ENSMUST00000141892 1700112K13Rik lincRNA Interval_82969 chr18 80082915 80083490 + 0 NA intron (ENSMUSG00000056214.9, intron 2 of 2) protein_coding-intron (ENSMUSG00000056214.9, intron 2 of 2) -3604 ENSMUSG00000118269.1 ENSMUSG00000118269 ENSMUST00000235723 Gm50195 TEC Interval_162288 chr8 126804188 126806048 + 0 NA Intergenic Intergenic -34115 ENSMUSG00000110498.1 ENSMUSG00000110498 ENSMUST00000212914 A630001O12Rik lincRNA Interval_4946 chr1 82866625 82868253 + 0 NA intron (ENSMUSG00000026159.13, intron 2 of 12) protein_coding-intron (ENSMUSG00000026159.13, intron 2 of 12) 27770 ENSMUSG00000026159.13 ENSMUSG00000026159 ENSMUST00000186043 Agfg1 protein_coding Interval_76397 chr17 79933050 79934787 + 0 NA exon (ENSMUSG00000117458.1, exon 1 of 1) processed_pseudogene-exon (ENSMUSG00000117458.1, exon 1 of 1) 654 ENSMUSG00000117458.1 ENSMUSG00000117458 ENSMUST00000234229 Gm6552 processed_pseudogene Interval_149171 chr7 95864026 95864446 + 0 NA Intergenic Intergenic 49150 ENSMUSG00000108628.1 ENSMUSG00000108628 ENSMUST00000205327 Gm5037 processed_pseudogene Interval_36788 chr12 54045849 54047700 + 0 NA intron (ENSMUSG00000021010.9, intron 7 of 10) protein_coding-intron (ENSMUSG00000021010.9, intron 8 of 11) 32618 ENSMUSG00000099407.1 ENSMUSG00000099407 ENSMUST00000185390 1700060O08Rik antisense Interval_169478 chr9 98032031 98033810 + 0 NA promoter-TSS (ENSMUSG00000032452.12) protein_coding-promoter-TSS (ENSMUSG00000032452.12) 63 ENSMUSG00000032452.12 ENSMUSG00000032452 ENSMUST00000162295 Clstn2 protein_coding Interval_121135 chr4 153377481 153378304 + 0 NA intron (ENSMUSG00000039546.9, intron 4 of 4) protein_coding-intron (ENSMUSG00000039546.9, intron 5 of 5) 104287 ENSMUSG00000039546.9 ENSMUSG00000039546 ENSMUST00000149177 Ajap1 protein_coding Interval_127022 chr5 99652982 99653699 + 0 NA intron (ENSMUSG00000089809.9, intron 1 of 16) protein_coding-intron (ENSMUSG00000089809.9, intron 1 of 1) -2361 ENSMUSG00000087791.1 ENSMUSG00000087791 ENSMUST00000157166 Gm25969 snoRNA Interval_14021 chr10 25631878 25633181 + 0 NA intron (ENSMUSG00000101537.1, intron 3 of 3) antisense-intron (ENSMUSG00000101537.1, intron 3 of 3) -3655 ENSMUSG00000112101.1 ENSMUSG00000112101 ENSMUST00000219989 Gm47924 processed_pseudogene Interval_127492 chr5 104458898 104460755 + 0 NA exon (ENSMUSG00000034462.9, exon 1 of 15) protein_coding-exon (ENSMUSG00000034462.9, exon 1 of 15) 24684 ENSMUSG00000029304.14 ENSMUSG00000029304 ENSMUST00000112747 Spp1 protein_coding Interval_20839 chr10 121425200 121425661 + 0 NA intron (ENSMUSG00000112009.1, intron 1 of 1) protein_coding-intron (ENSMUSG00000025795.8, intron 1 of 4) 24717 ENSMUSG00000112209.1 ENSMUSG00000112209 ENSMUST00000218038 Gm18730 processed_pseudogene Interval_142227 chr6 139259877 139260230 + 0 NA Intergenic Intergenic 62523 ENSMUSG00000108128.1 ENSMUSG00000108128 ENSMUST00000204038 4922502N22Rik lincRNA Interval_95467 chr2 109862584 109863540 + 0 NA Intergenic Intergenic -27808 ENSMUSG00000027162.7 ENSMUSG00000027162 ENSMUST00000151163 Lin7c protein_coding Interval_149437 chr7 98523923 98524470 + 0 NA Intergenic Intergenic 17242 ENSMUSG00000065803.1 ENSMUSG00000065803 ENSMUST00000083869 Gm23040 snRNA Interval_80509 chr18 43144222 43144472 + 0 NA intron (ENSMUSG00000117792.1, intron 1 of 9) processed_transcript-intron (ENSMUSG00000117792.1, intron 1 of 9) -26812 ENSMUSG00000048188.6 ENSMUSG00000048188 ENSMUST00000062242 Gm8181 processed_pseudogene Interval_17515 chr10 77441885 77442522 + 0 NA Intergenic Intergenic -15714 ENSMUSG00000112818.1 ENSMUSG00000112818 ENSMUST00000218522 Gm35920 lincRNA Interval_171508 chr9 118939352 118940203 + 0 NA intron (ENSMUSG00000047409.13, intron 1 of 5) protein_coding-intron (ENSMUSG00000047409.13, intron 1 of 7) 9910 ENSMUSG00000047409.13 ENSMUSG00000047409 ENSMUST00000174132 Ctdspl protein_coding Interval_41743 chr12 118614178 118614808 + 0 NA Intergenic Intergenic 11816 ENSMUSG00000114034.1 ENSMUSG00000114034 ENSMUST00000222831 Gm9267 processed_pseudogene Interval_3460 chr1 58529833 58530138 + 0 NA exon (ENSMUSG00000038174.14, exon 12 of 12) protein_coding-exon (ENSMUSG00000038174.14, exon 12 of 12) 24837 ENSMUSG00000085054.2 ENSMUSG00000085054 ENSMUST00000139825 Gm15834 lincRNA Interval_70297 chr17 8310878 8311731 + 0 NA promoter-TSS (ENSMUSG00000087478.1) processed_transcript-promoter-TSS (ENSMUSG00000087478.1) 195 ENSMUSG00000117569.1 ENSMUSG00000117569 ENSMUST00000140890 Gm49987 processed_transcript Interval_174679 chrX 162849344 162850519 + 0 NA TTS (ENSMUSG00000088195.1) snRNA-TTS (ENSMUSG00000088195.1) 333 ENSMUSG00000088195.1 ENSMUSG00000088195 ENSMUST00000157570 Gm23901 snRNA Interval_94869 chr2 98751802 98752076 + 0 NA Intergenic Intergenic -84638 ENSMUSG00000075014.1 ENSMUSG00000075014 ENSMUST00000099683 Gm10800 protein_coding Interval_342 chr1 4352259 4352548 + 0 NA exon (ENSMUSG00000025900.13, exon 2 of 4) protein_coding-exon (ENSMUSG00000025900.13, exon 2 of 4) 12426 ENSMUSG00000104123.1 ENSMUSG00000104123 ENSMUST00000194382 Gm37483 TEC Interval_108508 chr3 127818752 127819588 + 0 NA TTS (ENSMUSG00000074238.6) protein_coding-TTS (ENSMUSG00000074238.6) 13801 ENSMUSG00000105804.1 ENSMUSG00000105804 ENSMUST00000200664 Gm43654 TEC Interval_52410 chr14 45724235 45724597 + 0 NA Intergenic Intergenic -11092 ENSMUSG00000082662.1 ENSMUSG00000082662 ENSMUST00000117292 Gm15516 processed_pseudogene Interval_6199 chr1 101628522 101629479 + 0 NA Intergenic Intergenic 125543 ENSMUSG00000100065.1 ENSMUSG00000100065 ENSMUST00000189423 Gm18969 processed_pseudogene Interval_49377 chr13 111552731 111554258 + 0 NA Intergenic Intergenic -3547 ENSMUSG00000116016.1 ENSMUSG00000116016 ENSMUST00000231096 Gm49496 protein_coding Interval_123019 chr5 28482165 28482415 + 0 NA intron (ENSMUSG00000097726.7, intron 1 of 6) antisense-intron (ENSMUSG00000097726.7, intron 1 of 6) -15034 ENSMUSG00000002633.4 ENSMUSG00000002633 ENSMUST00000002708 Shh protein_coding Interval_152702 chr7 136590877 136591416 + 0 NA Intergenic Intergenic -66063 ENSMUSG00000109894.1 ENSMUSG00000109894 ENSMUST00000210286 Gm5904 processed_pseudogene Interval_53637 chr14 60465531 60465717 + 0 NA Intergenic Intergenic -19584 ENSMUSG00000101797.1 ENSMUSG00000101797 ENSMUST00000190392 Gm29266 lincRNA Interval_16339 chr10 62329094 62330105 + 0 NA intron (ENSMUSG00000037012.18, intron 5 of 5) protein_coding-intron (ENSMUSG00000037012.18, intron 2 of 19) -11008 ENSMUSG00000085347.1 ENSMUSG00000085347 ENSMUST00000142968 Hk1os antisense Interval_5321 chr1 87547195 87547762 + 0 NA intron (ENSMUSG00000026259.14, intron 1 of 14) protein_coding-intron (ENSMUSG00000026259.14, intron 1 of 14) -2786 ENSMUSG00000090994.1 ENSMUSG00000090994 ENSMUST00000172004 Gm6153 processed_pseudogene Interval_149029 chr7 92465723 92465889 + 0 NA Intergenic Intergenic 34636 ENSMUSG00000109031.1 ENSMUSG00000109031 ENSMUST00000207187 Gm45201 TEC Interval_151763 chr7 126494197 126494556 + 0 NA promoter-TSS (ENSMUSG00000032637.15) protein_coding-promoter-TSS (ENSMUSG00000032637.15) 5005 ENSMUSG00000073838.10 ENSMUSG00000073838 ENSMUST00000206572 Tufm protein_coding Interval_67544 chr16 50509407 50509826 + 0 NA Intergenic Intergenic -16629 ENSMUSG00000097694.8 ENSMUSG00000097694 ENSMUST00000181884 G730013B05Rik lincRNA Interval_56750 chr14 121847926 121848774 + 0 NA Intergenic Intergenic 17336 ENSMUSG00000115443.1 ENSMUSG00000115443 ENSMUST00000228932 Gm9395 processed_pseudogene Interval_137898 chr6 83212668 83213137 + 0 NA Intergenic Intergenic 18359 ENSMUSG00000031865.16 ENSMUSG00000031865 ENSMUST00000153793 Dctn1 protein_coding Interval_151417 chr7 122229210 122230493 + 0 NA Intergenic Intergenic 8278 ENSMUSG00000030865.4 ENSMUSG00000030865 ENSMUST00000160828 Chp2 protein_coding Interval_104468 chr3 66028339 66028688 + 0 NA Intergenic Intergenic 3006 ENSMUSG00000103369.1 ENSMUSG00000103369 ENSMUST00000192096 Gm6546 processed_pseudogene Interval_2009 chr1 35869527 35872108 + 0 NA Intergenic Intergenic -9028 ENSMUSG00000102531.1 ENSMUSG00000102531 ENSMUST00000194261 1110002O04Rik lincRNA Interval_71387 chr17 22976060 22976904 + 0 NA Intergenic Intergenic -16224 ENSMUSG00000094752.1 ENSMUSG00000094752 ENSMUST00000177509 Vmn2r-ps129 unprocessed_pseudogene Interval_136355 chr6 53700940 53701793 + 0 NA TTS (ENSMUSG00000053007.9) protein_coding-TTS (ENSMUSG00000053007.9) 33596 ENSMUSG00000108004.1 ENSMUSG00000108004 ENSMUST00000204451 Gm44080 TEC Interval_40978 chr12 110398522 110399028 + 0 NA Intergenic Intergenic -48532 ENSMUSG00000017843.14 ENSMUSG00000017843 ENSMUST00000221074 Ppp2r5c protein_coding Interval_91531 chr2 41410720 41411011 + 0 NA intron (ENSMUSG00000049252.17, intron 3 of 13) protein_coding-intron (ENSMUSG00000049252.17, intron 18 of 90) 412008 ENSMUSG00000083260.1 ENSMUSG00000083260 ENSMUST00000121274 Gm13460 processed_pseudogene Interval_154808 chr8 23553681 23554608 + 0 NA Intergenic Intergenic -115517 ENSMUSG00000037492.16 ENSMUSG00000037492 ENSMUST00000146774 Zmat4 protein_coding Interval_120516 chr4 149093913 149094174 + 0 NA intron (ENSMUSG00000028975.16, intron 1 of 3) protein_coding-intron (ENSMUSG00000028975.16, intron 1 of 8) -2340 ENSMUSG00000081086.1 ENSMUSG00000081086 ENSMUST00000118516 Gm9506 processed_pseudogene Interval_46439 chr13 65270719 65270932 + 0 NA Intergenic Intergenic -5947 ENSMUSG00000112960.1 ENSMUSG00000112960 ENSMUST00000222969 Gm47254 unprocessed_pseudogene Interval_53510 chr14 57950479 57951379 + 0 NA intron (ENSMUSG00000021973.9, intron 2 of 2) protein_coding-intron (ENSMUSG00000021973.9, intron 4 of 11) -30997 ENSMUSG00000021973.9 ENSMUSG00000021973 ENSMUST00000225116 Micu2 protein_coding Interval_48631 chr13 100743893 100745047 + 0 NA promoter-TSS (ENSMUSG00000061474.11) protein_coding-promoter-TSS (ENSMUSG00000061474.11) -357 ENSMUSG00000061474.11 ENSMUSG00000061474 ENSMUST00000150113 Mrps36 protein_coding Interval_166734 chr9 62335581 62335964 + 0 NA exon (ENSMUSG00000111193.1, exon 8 of 8) lincRNA-exon (ENSMUSG00000111193.1, exon 8 of 8) -6692 ENSMUSG00000032249.14 ENSMUSG00000032249 ENSMUST00000145679 Anp32a protein_coding Interval_4912 chr1 82394546 82394881 + 0 NA intron (ENSMUSG00000100786.1, intron 2 of 2) protein_coding-intron (ENSMUSG00000026142.15, intron 6 of 6) 2104 ENSMUSG00000096779.1 ENSMUSG00000096779 ENSMUST00000117032 Gm22112 miRNA Interval_106088 chr3 92894429 92894691 + 0 NA Intergenic Intergenic -24344 ENSMUSG00000090314.2 ENSMUSG00000090314 ENSMUST00000163439 2310050C09Rik protein_coding Interval_20361 chr10 117111079 117111315 + 0 NA intron (ENSMUSG00000020170.4, intron 1 of 5) protein_coding-intron (ENSMUSG00000020170.4, intron 1 of 9) 37298 ENSMUSG00000020170.4 ENSMUSG00000020170 ENSMUST00000219104 Frs2 protein_coding Interval_116840 chr4 117627194 117627484 + 0 NA intron (ENSMUSG00000033423.16, intron 6 of 7) protein_coding-intron (ENSMUSG00000033423.16, intron 7 of 8) 54914 ENSMUSG00000009640.11 ENSMUSG00000009640 ENSMUST00000127750 Dmap1 protein_coding Interval_8784 chr1 151059298 151060057 + 0 NA Intergenic Intergenic 2433 ENSMUSG00000096851.1 ENSMUSG00000096851 ENSMUST00000180118 Gm22756 snRNA Interval_75926 chr17 73107503 73108702 + 0 NA exon (ENSMUSG00000054469.14, exon 1 of 6) protein_coding-exon (ENSMUSG00000054469.14, exon 1 of 6) -18325 ENSMUSG00000054469.14 ENSMUSG00000054469 ENSMUST00000134149 Lclat1 protein_coding Interval_160421 chr8 109360590 109361759 + 0 NA Intergenic Intergenic -20310 ENSMUSG00000110528.1 ENSMUSG00000110528 ENSMUST00000211890 Gm1943 processed_pseudogene Interval_145262 chr7 31031977 31032275 + 0 NA TTS (ENSMUSG00000009687.14) protein_coding-TTS (ENSMUSG00000009687.14) 5812 ENSMUSG00000009687.14 ENSMUSG00000009687 ENSMUST00000161259 Fxyd5 protein_coding Interval_103885 chr3 54450266 54450613 + 0 NA Intergenic Intergenic -31021 ENSMUSG00000069014.4 ENSMUSG00000069014 ENSMUST00000198699 Gm5641 transcribed_processed_pseudogene Interval_155559 chr8 34484969 34485554 + 0 NA Intergenic Intergenic -12266 ENSMUSG00000110369.1 ENSMUSG00000110369 ENSMUST00000210285 Gm45349 lincRNA Interval_14962 chr10 41481128 41481826 + 0 NA promoter-TSS (ENSMUSG00000019823.17) protein_coding-promoter-TSS (ENSMUSG00000019823.17) 4398 ENSMUSG00000019823.17 ENSMUSG00000019823 ENSMUST00000138657 Mical1 protein_coding Interval_6069 chr1 95753370 95755396 + 0 NA Intergenic Intergenic 16187 ENSMUSG00000102718.1 ENSMUSG00000102718 ENSMUST00000194989 Gm37761 TEC Interval_54811 chr14 75366882 75368219 + 0 NA intron (ENSMUSG00000115615.1, intron 3 of 4) lincRNA-intron (ENSMUSG00000115615.1, intron 3 of 4) 29478 ENSMUSG00000022000.11 ENSMUSG00000022000 ENSMUST00000228470 Zc3h13 protein_coding Interval_84875 chr19 18548673 18549191 + 0 NA intron (ENSMUSG00000024725.13, intron 9 of 10) protein_coding-intron (ENSMUSG00000024725.13, intron 9 of 10) -32523 ENSMUSG00000080783.1 ENSMUSG00000080783 ENSMUST00000117398 Gm8250 processed_pseudogene Interval_45552 chr13 55801054 55802172 + 0 NA intron (ENSMUSG00000021499.12, intron 3 of 7) protein_coding-intron (ENSMUSG00000021499.12, intron 3 of 7) 17034 ENSMUSG00000021499.12 ENSMUSG00000021499 ENSMUST00000109898 Catsper3 protein_coding Interval_157191 chr8 67439211 67439690 + 0 NA Intergenic Intergenic -41471 ENSMUSG00000025588.4 ENSMUSG00000025588 ENSMUST00000026677 Nat1 protein_coding Interval_17358 chr10 76051128 76052521 + 0 NA Intergenic Intergenic 19174 ENSMUSG00000049764.8 ENSMUSG00000049764 ENSMUST00000061617 Zfp280b protein_coding Interval_159529 chr8 95251932 95252371 + 0 NA exon (ENSMUSG00000031789.17, exon 28 of 33) protein_coding-exon (ENSMUSG00000031789.17, exon 28 of 33) 48515 ENSMUSG00000031789.17 ENSMUSG00000031789 ENSMUST00000212237 Cngb1 protein_coding Interval_23503 chr11 22990122 22992061 + 0 NA intron (ENSMUSG00000007739.10, intron 1 of 2) protein_coding-intron (ENSMUSG00000007739.10, intron 1 of 12) -4533 ENSMUSG00000007739.10 ENSMUSG00000007739 ENSMUST00000174689 Cct4 protein_coding Interval_143209 chr7 4509831 4510340 + 0 NA promoter-TSS (ENSMUSG00000064179.13) protein_coding-promoter-TSS (ENSMUSG00000064179.13) 5890 ENSMUSG00000064179.13 ENSMUSG00000064179 ENSMUST00000163560 Tnnt1 protein_coding Interval_90129 chr2 28422799 28423661 + 0 NA Intergenic Intergenic -24711 ENSMUSG00000035829.13 ENSMUSG00000035829 ENSMUST00000040324 Ppp1r26 protein_coding Interval_133605 chr6 7542787 7543531 + 0 NA Intergenic Intergenic 2205 ENSMUSG00000107493.1 ENSMUSG00000107493 ENSMUST00000204531 Gm44048 processed_pseudogene Interval_13271 chr10 13892633 13895240 + 0 NA Intergenic Intergenic -2283 ENSMUSG00000098048.1 ENSMUSG00000098048 ENSMUST00000182754 Gm8330 processed_pseudogene Interval_11457 chr1 182007553 182007955 + 0 NA promoter-TSS (ENSMUSG00000102760.1) TEC-promoter-TSS (ENSMUSG00000102760.1) -68 ENSMUSG00000102760.1 ENSMUSG00000102760 ENSMUST00000191734 Gm37258 TEC Interval_63684 chr15 102782664 102783545 + 0 NA Intergenic Intergenic 12267 ENSMUSG00000116263.1 ENSMUSG00000116263 ENSMUST00000229081 Gm49473 processed_pseudogene Interval_43094 chr13 23931051 23931546 + 0 NA Intergenic Intergenic 2858 ENSMUSG00000050799.3 ENSMUSG00000050799 ENSMUST00000052776 H2bc1 protein_coding Interval_125890 chr5 75465646 75466367 + 0 NA Intergenic Intergenic -66634 ENSMUSG00000107386.1 ENSMUSG00000107386 ENSMUST00000202494 Gm42800 lincRNA Interval_10451 chr1 170967276 170968876 + 0 NA exon (ENSMUSG00000026656.15, exon 3 of 8) protein_coding-exon (ENSMUSG00000026656.15, exon 3 of 8) -5297 ENSMUSG00000103676.1 ENSMUSG00000103676 ENSMUST00000194835 Gm38204 antisense Interval_30546 chr11 95040789 95042428 + 0 NA promoter-TSS (ENSMUSG00000038967.13) protein_coding-promoter-TSS (ENSMUSG00000038967.13) -733 ENSMUSG00000038967.13 ENSMUSG00000038967 ENSMUST00000155857 Pdk2 protein_coding Interval_118820 chr4 133877976 133879713 + 0 NA intron (ENSMUSG00000003644.17, intron 2 of 3) protein_coding-intron (ENSMUSG00000003644.17, intron 2 of 21) 4283 ENSMUSG00000080946.1 ENSMUSG00000080946 ENSMUST00000118376 Gm12985 processed_pseudogene Interval_53035 chr14 53727249 53727643 + 0 NA Intergenic Intergenic -2112 ENSMUSG00000082663.2 ENSMUSG00000082663 ENSMUST00000117226 Trav13-3 TR_V_pseudogene Interval_11814 chr1 185653749 185654036 + 0 NA Intergenic Intergenic -90911 ENSMUSG00000103799.1 ENSMUSG00000103799 ENSMUST00000195210 Gm38093 lincRNA Interval_96221 chr2 120597153 120597560 + 0 NA TTS (ENSMUSG00000027287.14) protein_coding-TTS (ENSMUSG00000027287.14) 11946 ENSMUSG00000027286.16 ENSMUSG00000027286 ENSMUST00000141932 Lrrc57 protein_coding Interval_99437 chr2 161066211 161067032 + 0 NA intron (ENSMUSG00000057133.14, intron 1 of 16) protein_coding-intron (ENSMUSG00000057133.14, intron 1 of 36) -42790 ENSMUSG00000109780.1 ENSMUSG00000109780 ENSMUST00000209874 Gm45447 antisense Interval_150194 chr7 107788209 107788919 + 0 NA intron (ENSMUSG00000048236.8, intron 12 of 15) protein_coding-intron (ENSMUSG00000048236.8, intron 12 of 15) 7625 ENSMUSG00000109402.1 ENSMUSG00000109402 ENSMUST00000208448 Gm45040 antisense Interval_91535 chr2 41633177 41633526 + 0 NA intron (ENSMUSG00000049252.17, intron 4 of 62) protein_coding-intron (ENSMUSG00000049252.17, intron 7 of 90) 355478 ENSMUSG00000081999.3 ENSMUSG00000081999 ENSMUST00000120980 Gm13461 processed_pseudogene Interval_56406 chr14 118549605 118550147 + 0 NA intron (ENSMUSG00000032849.14, intron 19 of 29) protein_coding-intron (ENSMUSG00000032849.14, intron 20 of 30) -14196 ENSMUSG00000115075.1 ENSMUSG00000115075 ENSMUST00000227627 Gm49033 processed_pseudogene Interval_72670 chr17 31456626 31457117 + 0 NA intron (ENSMUSG00000041119.12, intron 4 of 13) protein_coding-intron (ENSMUSG00000041119.12, intron 9 of 18) 4964 ENSMUSG00000118081.1 ENSMUSG00000118081 ENSMUST00000236844 Gm50138 antisense Interval_108399 chr3 126619029 126619675 + 0 NA intron (ENSMUSG00000053819.16, intron 2 of 20) protein_coding-intron (ENSMUSG00000053819.16, intron 2 of 18) -6528 ENSMUSG00000104571.1 ENSMUSG00000104571 ENSMUST00000195993 Gm43010 TEC Interval_150256 chr7 109039251 109039676 + 0 NA intron (ENSMUSG00000048330.14, intron 4 of 4) protein_coding-intron (ENSMUSG00000048330.14, intron 5 of 5) 18361 ENSMUSG00000048330.14 ENSMUSG00000048330 ENSMUST00000129629 Ric3 protein_coding Interval_133442 chr6 5052151 5053090 + 0 NA intron (ENSMUSG00000032827.15, intron 2 of 17) protein_coding-intron (ENSMUSG00000032827.15, intron 3 of 15) 93637 ENSMUSG00000097396.1 ENSMUSG00000097396 ENSMUST00000180645 Gm26556 TEC Interval_84451 chr19 11018647 11019617 + 0 NA Intergenic Intergenic -1101 ENSMUSG00000094584.2 ENSMUSG00000094584 ENSMUST00000177684 Ms4a18 protein_coding Interval_4181 chr1 71418909 71419156 + 0 NA Intergenic Intergenic 74782 ENSMUSG00000101617.1 ENSMUSG00000101617 ENSMUST00000186254 Gm6947 processed_pseudogene Interval_64664 chr16 13992867 13993086 + 0 NA intron (ENSMUSG00000044117.12, intron 1 of 3) protein_coding-intron (ENSMUSG00000044117.12, intron 1 of 5) -6088 ENSMUSG00000065968.8 ENSMUSG00000065968 ENSMUST00000178021 Ifitm7 protein_coding Interval_4914 chr1 82432926 82433844 + 0 NA intron (ENSMUSG00000026142.15, intron 6 of 6) protein_coding-intron (ENSMUSG00000026142.15, intron 6 of 6) -30639 ENSMUSG00000100786.1 ENSMUSG00000100786 ENSMUST00000187929 Gm28940 antisense Interval_3502 chr1 59099790 59100143 + 0 NA TTS (ENSMUSG00000038079.14) protein_coding-TTS (ENSMUSG00000038079.14) -5073 ENSMUSG00000072295.7 ENSMUSG00000072295 ENSMUST00000149784 C2cd6 protein_coding Interval_53850 chr14 62751458 62751869 + 0 NA intron (ENSMUSG00000035161.7, intron 3 of 4) protein_coding-intron (ENSMUSG00000035161.7, intron 3 of 18) -28034 ENSMUSG00000115371.1 ENSMUSG00000115371 ENSMUST00000226895 Gm18146 processed_pseudogene Interval_109390 chr3 141583340 141583729 + 0 NA intron (ENSMUSG00000059921.15, intron 1 of 15) protein_coding-intron (ENSMUSG00000059921.15, intron 1 of 16) 99366 ENSMUSG00000089924.1 ENSMUSG00000089924 ENSMUST00000160604 Gm15689 antisense Interval_154598 chr8 21981586 21982939 + 0 NA Intergenic Intergenic 12487 ENSMUSG00000017049.4 ENSMUSG00000017049 ENSMUST00000017193 Ccdc70 protein_coding Interval_57122 chr15 6722701 6723775 + 0 NA intron (ENSMUSG00000050310.9, intron 2 of 9) protein_coding-intron (ENSMUSG00000050310.9, intron 2 of 37) 14859 ENSMUSG00000050310.9 ENSMUSG00000050310 ENSMUST00000061656 Rictor protein_coding Interval_149519 chr7 99303714 99305550 + 0 NA intron (ENSMUSG00000055407.14, intron 1 of 3) protein_coding-intron (ENSMUSG00000055407.14, intron 1 of 3) -16568 ENSMUSG00000109460.1 ENSMUSG00000109460 ENSMUST00000129058 Gm45591 sense_intronic Interval_150183 chr7 107674035 107674304 + 0 NA intron (ENSMUSG00000036528.16, intron 1 of 6) protein_coding-intron (ENSMUSG00000036528.16, intron 3 of 24) 8858 ENSMUSG00000036528.16 ENSMUSG00000036528 ENSMUST00000208159 Ppfibp2 protein_coding Interval_143063 chr6 149003997 149004223 + 0 NA exon (ENSMUSG00000082633.1, exon 1 of 1) processed_pseudogene-exon (ENSMUSG00000082633.1, exon 1 of 1) 195 ENSMUSG00000082633.1 ENSMUSG00000082633 ENSMUST00000117470 Gm15779 processed_pseudogene Interval_145744 chr7 37989544 37989945 + 0 NA intron (ENSMUSG00000030421.9, intron 2 of 10) protein_coding-intron (ENSMUSG00000030421.9, intron 2 of 10) 33807 ENSMUSG00000030421.9 ENSMUSG00000030421 ENSMUST00000206169 Uri1 protein_coding Interval_54642 chr14 72611005 72611212 + 0 NA intron (ENSMUSG00000033487.14, intron 3 of 3) protein_coding-intron (ENSMUSG00000033487.14, intron 3 of 25) 21356 ENSMUSG00000090216.1 ENSMUSG00000090216 ENSMUST00000160445 Gm16549 antisense Interval_81692 chr18 63549016 63549366 + 0 NA Intergenic Intergenic -4056 ENSMUSG00000117875.1 ENSMUSG00000117875 ENSMUST00000237314 Gm6789 processed_pseudogene Interval_101115 chr2 178077992 178079009 + 0 NA promoter-TSS (ENSMUSG00000078861.8) protein_coding-promoter-TSS (ENSMUSG00000078861.8) -75 ENSMUSG00000078861.8 ENSMUSG00000078861 ENSMUST00000108923 Zfp931 protein_coding Interval_115182 chr4 93670988 93671295 + 0 NA promoter-TSS (ENSMUSG00000084833.1) lincRNA-promoter-TSS (ENSMUSG00000084833.1) -71 ENSMUSG00000084833.1 ENSMUSG00000084833 ENSMUST00000137509 Gm12649 lincRNA Interval_57989 chr15 25876284 25878098 + 0 NA intron (ENSMUSG00000022270.16, intron 1 of 8) protein_coding-intron (ENSMUSG00000022270.16, intron 1 of 8) -33233 ENSMUSG00000022270.16 ENSMUSG00000022270 ENSMUST00000228306 Retreg1 protein_coding Interval_114417 chr4 75801218 75801982 + 0 NA Intergenic Intergenic -52918 ENSMUSG00000084253.1 ENSMUSG00000084253 ENSMUST00000118109 Gm11256 processed_pseudogene Interval_142794 chr6 145746075 145747489 + 0 NA promoter-TSS (ENSMUSG00000030259.12) protein_coding-promoter-TSS (ENSMUSG00000030259.12) -509 ENSMUSG00000085658.1 ENSMUSG00000085658 ENSMUST00000144757 Gm15704 lincRNA Interval_145478 chr7 35085576 35086883 + 0 NA promoter-TSS (ENSMUSG00000108657.1) lincRNA-promoter-TSS (ENSMUSG00000108657.1) -607 ENSMUSG00000108657.1 ENSMUSG00000108657 ENSMUST00000205323 Gm35611 lincRNA Interval_169256 chr9 95886043 95886477 + 0 NA intron (ENSMUSG00000032409.15, intron 18 of 46) protein_coding-intron (ENSMUSG00000032409.15, intron 18 of 46) -27938 ENSMUSG00000096655.2 ENSMUSG00000096655 ENSMUST00000178038 1700065D16Rik antisense Interval_50655 chr14 17636933 17637341 + 0 NA Intergenic Intergenic 133985 ENSMUSG00000114281.1 ENSMUSG00000114281 ENSMUST00000225878 Gm48320 processed_pseudogene Interval_3852 chr1 63687639 63687847 + 0 NA promoter-TSS (ENSMUSG00000069085.5) protein_coding-promoter-TSS (ENSMUSG00000069085.5) -833 ENSMUSG00000069085.5 ENSMUSG00000069085 ENSMUST00000126954 Dytn protein_coding Interval_116680 chr4 116626527 116628504 + 0 NA promoter-TSS (ENSMUSG00000028693.15) protein_coding-promoter-TSS (ENSMUSG00000028693.15) -21267 ENSMUSG00000028693.15 ENSMUSG00000028693 ENSMUST00000148436 Nasp protein_coding Interval_117417 chr4 123594575 123595326 + 0 NA intron (ENSMUSG00000028649.21, intron 1 of 97) protein_coding-intron (ENSMUSG00000028649.21, intron 1 of 92) 18793 ENSMUSG00000028649.21 ENSMUSG00000028649 ENSMUST00000146000 Macf1 protein_coding Interval_158843 chr8 87155909 87157326 + 0 NA intron (ENSMUSG00000098684.1, intron 3 of 7) lincRNA-intron (ENSMUSG00000098684.1, intron 3 of 7) 41972 ENSMUSG00000098684.1 ENSMUSG00000098684 ENSMUST00000183611 Gm27246 lincRNA Interval_20221 chr10 116207791 116208806 + 0 NA intron (ENSMUSG00000020151.16, intron 1 of 4) protein_coding-intron (ENSMUSG00000020151.16, intron 6 of 13) 30947 ENSMUSG00000020151.16 ENSMUSG00000020151 ENSMUST00000124369 Ptprr protein_coding Interval_107038 chr3 103098756 103099116 + 0 NA exon (ENSMUSG00000070385.12, exon 14 of 14) protein_coding-exon (ENSMUSG00000070385.12, exon 14 of 14) 2190 ENSMUSG00000105731.1 ENSMUSG00000105731 ENSMUST00000198198 Gm43063 sense_intronic Interval_2202 chr1 36996560 36997054 + 0 NA Intergenic Intergenic -8632 ENSMUSG00000095944.1 ENSMUSG00000095944 ENSMUST00000177688 n-R5s210 rRNA Interval_37621 chr12 70451948 70453587 + 0 NA promoter-TSS (ENSMUSG00000021072.12) protein_coding-promoter-TSS (ENSMUSG00000021072.12) -3271 ENSMUSG00000021072.12 ENSMUSG00000021072 ENSMUST00000160865 Tmx1 protein_coding Interval_39821 chr12 98724797 98726304 + 0 NA intron (ENSMUSG00000021009.15, intron 2 of 2) protein_coding-intron (ENSMUSG00000021009.15, intron 2 of 18) -34293 ENSMUSG00000021012.16 ENSMUSG00000021012 ENSMUST00000220660 Zc3h14 protein_coding Interval_32593 chr11 108956009 108956280 + 0 NA Intergenic Intergenic -14129 ENSMUSG00000086268.1 ENSMUSG00000086268 ENSMUST00000143435 Gm11670 antisense Interval_1315 chr1 20449580 20450621 + 0 NA intron (ENSMUSG00000043760.16, intron 36 of 66) protein_coding-intron (ENSMUSG00000043760.16, intron 36 of 66) -5188 ENSMUSG00000070175.1 ENSMUSG00000070175 ENSMUST00000093665 Gm24162 snRNA Interval_170486 chr9 108277896 108278088 + 0 NA Intergenic Intergenic -12463 ENSMUSG00000032606.7 ENSMUSG00000032606 ENSMUST00000192035 Nicn1 protein_coding Interval_96706 chr2 127300161 127301202 + 0 NA Intergenic Intergenic 8570 ENSMUSG00000027367.16 ENSMUSG00000027367 ENSMUST00000154549 Stard7 protein_coding Interval_147702 chr7 72239430 72242027 + 0 NA intron (ENSMUSG00000032776.9, intron 4 of 22) protein_coding-intron (ENSMUSG00000032776.9, intron 4 of 22) -11368 ENSMUSG00000032776.9 ENSMUSG00000032776 ENSMUST00000206755 Mctp2 protein_coding Interval_78998 chr18 23815157 23816213 + 0 NA intron (ENSMUSG00000024277.14, intron 1 of 5) protein_coding-intron (ENSMUSG00000024277.14, intron 1 of 6) 1686 ENSMUSG00000089290.1 ENSMUSG00000089290 ENSMUST00000158665 Gm23207 snRNA Interval_32595 chr11 108963310 108964070 + 0 NA Intergenic Intergenic -21675 ENSMUSG00000086268.1 ENSMUSG00000086268 ENSMUST00000143435 Gm11670 antisense Interval_140000 chr6 113319924 113320199 + 0 NA promoter-TSS (ENSMUSG00000001632.16) protein_coding-promoter-TSS (ENSMUSG00000001632.16) 6686 ENSMUSG00000085012.1 ENSMUSG00000085012 ENSMUST00000156734 Gm15492 antisense Interval_149393 chr7 98089429 98089740 + 0 NA intron (ENSMUSG00000030761.16, intron 13 of 46) protein_coding-intron (ENSMUSG00000030761.16, intron 14 of 47) 1544 ENSMUSG00000030761.16 ENSMUSG00000030761 ENSMUST00000131632 Myo7a protein_coding Interval_133898 chr6 14536417 14536591 + 0 NA Intergenic Intergenic 34521 ENSMUSG00000107657.1 ENSMUSG00000107657 ENSMUST00000204864 Gm44446 processed_pseudogene Interval_70883 chr17 15576600 15577767 + 0 NA promoter-TSS (ENSMUSG00000116940.1) processed_pseudogene-promoter-TSS (ENSMUSG00000116940.1) -32 ENSMUSG00000116940.1 ENSMUSG00000116940 ENSMUST00000231841 Gm7450 processed_pseudogene Interval_48131 chr13 96479679 96480245 + 0 NA TTS (ENSMUSG00000021668.15) protein_coding-TTS (ENSMUSG00000021668.15) -8802 ENSMUSG00000047117.13 ENSMUSG00000047117 ENSMUST00000181613 Ankdd1b protein_coding Interval_149215 chr7 96337438 96337668 + 0 NA intron (ENSMUSG00000048078.16, intron 1 of 32) protein_coding-intron (ENSMUSG00000048078.16, intron 1 of 32) 4411 ENSMUSG00000085751.1 ENSMUSG00000085751 ENSMUST00000137193 Gm15412 antisense Interval_64993 chr16 17733988 17734531 + 0 NA promoter-TSS (ENSMUSG00000116936.1) processed_pseudogene-promoter-TSS (ENSMUSG00000116936.1) 90 ENSMUSG00000116936.1 ENSMUSG00000116936 ENSMUST00000231811 Bod1-ps processed_pseudogene Interval_56545 chr14 120253303 120253710 + 0 NA Intergenic Intergenic -111877 ENSMUSG00000115146.1 ENSMUSG00000115146 ENSMUST00000226598 Gm4681 lincRNA Interval_41376 chr12 113163249 113164013 + 0 NA exon (ENSMUSG00000037466.13, exon 8 of 8) protein_coding-exon (ENSMUSG00000037466.13, exon 8 of 8) 7125 ENSMUSG00000037466.13 ENSMUSG00000037466 ENSMUST00000198072 Tedc1 protein_coding Interval_171623 chr9 119634777 119635261 + 0 NA intron (ENSMUSG00000034533.10, intron 16 of 26) protein_coding-intron (ENSMUSG00000034533.10, intron 17 of 27) 53020 ENSMUSG00000034533.10 ENSMUSG00000034533 ENSMUST00000213401 Scn10a protein_coding Interval_83871 chr19 5224261 5225488 + 0 NA intron (ENSMUSG00000024855.10, intron 2 of 4) protein_coding-intron (ENSMUSG00000024855.10, intron 1 of 23) -23571 ENSMUSG00000098803.1 ENSMUSG00000098803 ENSMUST00000183577 Gm27468 miRNA Interval_49867 chr13 117335530 117335809 + 0 NA Intergenic Intergenic 22951 ENSMUSG00000114540.1 ENSMUSG00000114540 ENSMUST00000225588 Gm6421 processed_pseudogene Interval_63339 chr15 100438164 100438454 + 0 NA Intergenic Intergenic -11375 ENSMUSG00000084688.1 ENSMUSG00000084688 ENSMUST00000122739 n-R5s43 rRNA Interval_119266 chr4 136564719 136565719 + 0 NA intron (ENSMUSG00000036940.15, intron 6 of 10) protein_coding-intron (ENSMUSG00000036940.15, intron 8 of 16) -12677 ENSMUSG00000036940.15 ENSMUSG00000036940 ENSMUST00000170979 Kdm1a protein_coding Interval_62750 chr15 96622537 96623103 + 0 NA intron (ENSMUSG00000023169.15, intron 2 of 2) protein_coding-intron (ENSMUSG00000023169.15, intron 2 of 15) 19393 ENSMUSG00000023169.15 ENSMUSG00000023169 ENSMUST00000229253 Slc38a1 protein_coding Interval_70899 chr17 15727844 15728267 + 0 NA intron (ENSMUSG00000023852.14, intron 4 of 22) protein_coding-intron (ENSMUSG00000023852.14, intron 4 of 35) -10480 ENSMUSG00000023852.14 ENSMUSG00000023852 ENSMUST00000173040 Chd1 protein_coding Interval_146691 chr7 49467888 49468687 + 0 NA intron (ENSMUSG00000052512.17, intron 10 of 38) protein_coding-intron (ENSMUSG00000052512.17, intron 10 of 37) -1425 ENSMUSG00000102148.1 ENSMUSG00000102148 ENSMUST00000193746 Gm38059 TEC Interval_174157 chrX 136826859 136827449 + 0 NA intron (ENSMUSG00000031425.15, intron 1 of 6) protein_coding-intron (ENSMUSG00000031425.15, intron 1 of 6) -6097 ENSMUSG00000031425.15 ENSMUSG00000031425 ENSMUST00000144880 Plp1 protein_coding Interval_17130 chr10 71738169 71739105 + 0 NA Intergenic Intergenic -20880 ENSMUSG00000112717.1 ENSMUSG00000112717 ENSMUST00000217686 Gm6362 processed_pseudogene Interval_16308 chr10 62101645 62102509 + 0 NA Intergenic Intergenic 30954 ENSMUSG00000046687.6 ENSMUSG00000046687 ENSMUST00000053865 Gm5424 processed_pseudogene Interval_17803 chr10 80174777 80175668 + 0 NA TTS (ENSMUSG00000035595.6) protein_coding-TTS (ENSMUSG00000035595.6) 2278 ENSMUSG00000035595.6 ENSMUSG00000035595 ENSMUST00000041882 Fam174c protein_coding Interval_61748 chr15 83791078 83791397 + 0 NA promoter-TSS (ENSMUSG00000041708.12) protein_coding-promoter-TSS (ENSMUSG00000041708.12) -777 ENSMUSG00000041708.12 ENSMUSG00000041708 ENSMUST00000148868 Mpped1 protein_coding Interval_52151 chr14 37164257 37164795 + 0 NA Intergenic Intergenic 18539 ENSMUSG00000114675.1 ENSMUSG00000114675 ENSMUST00000224221 Gm18834 processed_pseudogene Interval_64898 chr16 17069495 17070465 + 0 NA promoter-TSS (ENSMUSG00000022773.19) protein_coding-promoter-TSS (ENSMUSG00000022773.19) -7856 ENSMUSG00000022773.19 ENSMUSG00000022773 ENSMUST00000239090 Ypel1 protein_coding Interval_26165 chr11 54837699 54837889 + 0 NA TTS (ENSMUSG00000020268.14) protein_coding-TTS (ENSMUSG00000020268.14) 8083 ENSMUSG00000088231.1 ENSMUSG00000088231 ENSMUST00000157606 Gm25426 snRNA Interval_156982 chr8 63768859 63769118 + 0 NA Intergenic Intergenic -9063 ENSMUSG00000098106.1 ENSMUSG00000098106 ENSMUST00000182057 Gm5350 processed_pseudogene Interval_112425 chr4 41179217 41180728 + 0 NA intron (ENSMUSG00000036241.3, intron 2 of 4) protein_coding-intron (ENSMUSG00000036241.3, intron 2 of 4) -2948 ENSMUSG00000036241.3 ENSMUSG00000036241 ENSMUST00000123642 Ube2r2 protein_coding Interval_153998 chr8 11757664 11759164 + 0 NA promoter-TSS (ENSMUSG00000031511.16) protein_coding-promoter-TSS (ENSMUSG00000031511.16) 19793 ENSMUSG00000110394.1 ENSMUSG00000110394 ENSMUST00000209225 Gm18991 processed_pseudogene Interval_11049 chr1 178914706 178916116 + 0 NA exon (ENSMUSG00000026494.12, exon 9 of 12) protein_coding-exon (ENSMUSG00000026494.12, exon 9 of 12) 2203 ENSMUSG00000089713.1 ENSMUSG00000089713 ENSMUST00000162545 Gm16564 antisense Interval_143022 chr6 148539232 148539533 + 0 NA Intergenic Intergenic 74927 ENSMUSG00000070995.10 ENSMUSG00000070995 ENSMUST00000150112 Gm6313 lincRNA Interval_19253 chr10 95811830 95812364 + 0 NA exon (ENSMUSG00000112771.1, exon 3 of 3) lincRNA-exon (ENSMUSG00000112771.1, exon 3 of 3) -5473 ENSMUSG00000112599.1 ENSMUSG00000112599 ENSMUST00000220129 Gm47719 lincRNA Interval_118574 chr4 132585187 132585539 + 0 NA Intergenic Intergenic 21296 ENSMUSG00000056529.7 ENSMUSG00000056529 ENSMUST00000070690 Ptafr protein_coding Interval_64004 chr16 5185764 5186124 + 0 NA exon (ENSMUSG00000091712.2, exon 16 of 16) protein_coding-exon (ENSMUSG00000091712.2, exon 16 of 16) 11821 ENSMUSG00000023143.10 ENSMUSG00000023143 ENSMUST00000144490 Nagpa protein_coding Interval_31498 chr11 101034129 101034365 + 0 NA intron (ENSMUSG00000019302.16, intron 10 of 21) protein_coding-intron (ENSMUSG00000019302.16, intron 10 of 21) 3907 ENSMUSG00000098415.1 ENSMUSG00000098415 ENSMUST00000185166 Mir6928 miRNA Interval_129007 chr5 116613066 116613371 + 0 NA Intergenic Intergenic 20346 ENSMUSG00000107369.1 ENSMUSG00000107369 ENSMUST00000201478 Gstm2-ps1 processed_pseudogene Interval_26164 chr11 54834731 54835041 + 0 NA intron (ENSMUSG00000020268.14, intron 5 of 7) protein_coding-intron (ENSMUSG00000020268.14, intron 5 of 7) 5175 ENSMUSG00000088231.1 ENSMUSG00000088231 ENSMUST00000157606 Gm25426 snRNA Interval_53517 chr14 58034166 58034803 + 0 NA Intergenic Intergenic 15339 ENSMUSG00000114918.1 ENSMUSG00000114918 ENSMUST00000224236 Gm9012 processed_pseudogene Interval_5761 chr1 91540030 91540892 + 0 NA promoter-TSS (ENSMUSG00000026311.16) protein_coding-promoter-TSS (ENSMUSG00000026311.16) -271 ENSMUSG00000026311.16 ENSMUSG00000026311 ENSMUST00000188879 Asb1 protein_coding Interval_33989 chr11 119870979 119871605 + 0 NA intron (ENSMUSG00000025583.15, intron 3 of 5) protein_coding-intron (ENSMUSG00000025583.15, intron 21 of 33) 14983 ENSMUSG00000025583.15 ENSMUSG00000025583 ENSMUST00000131217 Rptor protein_coding Interval_49126 chr13 108291108 108291557 + 0 NA Intergenic Intergenic 19418 ENSMUSG00000114607.1 ENSMUSG00000114607 ENSMUST00000225465 Gm8990 processed_pseudogene Interval_159032 chr8 88974054 88976420 + 0 NA Intergenic Intergenic -49498 ENSMUSG00000099078.1 ENSMUSG00000099078 ENSMUST00000183771 Mir8110 miRNA Interval_94983 chr2 102524913 102526452 + 0 NA Intergenic Intergenic -24467 ENSMUSG00000027188.8 ENSMUSG00000027188 ENSMUST00000143071 Pamr1 protein_coding Interval_141071 chr6 124804284 124806469 + 0 NA Intergenic Intergenic -3509 ENSMUSG00000038451.13 ENSMUSG00000038451 ENSMUST00000112473 Spsb2 protein_coding Interval_126270 chr5 85771689 85772464 + 0 NA Intergenic Intergenic 51302 ENSMUSG00000104878.1 ENSMUSG00000104878 ENSMUST00000197581 Gm43567 lincRNA Interval_31184 chr11 98762790 98764548 + 0 NA exon (ENSMUSG00000058756.13, exon 8 of 10) protein_coding-exon (ENSMUSG00000058756.13, exon 8 of 10) 6757 ENSMUSG00000020889.11 ENSMUSG00000020889 ENSMUST00000139220 Nr1d1 protein_coding Interval_84000 chr19 6023424 6024011 + 0 NA Intergenic Intergenic 4148 ENSMUSG00000118194.1 ENSMUSG00000118194 ENSMUST00000236073 Gm19505 processed_pseudogene Interval_173828 chrX 105792877 105793102 + 0 NA Intergenic Intergenic -26894 ENSMUSG00000084678.1 ENSMUSG00000084678 ENSMUST00000122729 Gm26020 snRNA Interval_101819 chr3 9701425 9701803 + 0 NA intron (ENSMUSG00000027508.15, intron 6 of 8) protein_coding-intron (ENSMUSG00000027508.15, intron 5 of 7) 45094 ENSMUSG00000103876.1 ENSMUSG00000103876 ENSMUST00000195844 Gm17806 processed_pseudogene Interval_67567 chr16 51000735 51001346 + 0 NA Intergenic Intergenic -50090 ENSMUSG00000116706.1 ENSMUSG00000116706 ENSMUST00000231893 Gm32431 lincRNA Interval_90900 chr2 33347538 33348252 + 0 NA intron (ENSMUSG00000038831.16, intron 1 of 18) protein_coding-intron (ENSMUSG00000038831.16, intron 1 of 16) 15151 ENSMUSG00000093138.1 ENSMUSG00000093138 ENSMUST00000175397 Gm25998 miRNA Interval_27846 chr11 70385120 70385522 + 0 NA Intergenic Intergenic 24710 ENSMUSG00000018921.11 ENSMUSG00000018921 ENSMUST00000135148 Pelp1 protein_coding Interval_53780 chr14 61694830 61695413 + 0 NA Intergenic Intergenic 11611 ENSMUSG00000104187.1 ENSMUSG00000104187 ENSMUST00000194021 Gm37820 TEC Interval_110502 chr3 159877378 159877814 + 0 NA exon (ENSMUSG00000105990.1, exon 1 of 1) TEC-exon (ENSMUSG00000105990.1, exon 1 of 1) 1750 ENSMUSG00000105990.1 ENSMUSG00000105990 ENSMUST00000199465 Gm43307 TEC Interval_158445 chr8 83764984 83765203 + 0 NA Intergenic Intergenic 12175 ENSMUSG00000084682.1 ENSMUSG00000084682 ENSMUST00000122733 Gm22024 misc_RNA Interval_62940 chr15 98055227 98055955 + 0 NA intron (ENSMUSG00000033075.17, intron 5 of 9) protein_coding-intron (ENSMUSG00000033075.17, intron 13 of 17) -14161 ENSMUSG00000088325.1 ENSMUSG00000088325 ENSMUST00000157700 Gm25668 snoRNA Interval_47476 chr13 85067028 85067254 + 0 NA Intergenic Intergenic -27194 ENSMUSG00000114614.1 ENSMUSG00000114614 ENSMUST00000224450 Gm47745 processed_pseudogene Interval_166371 chr9 58709226 58710289 + 0 NA intron (ENSMUSG00000074269.10, intron 2 of 2) protein_coding-intron (ENSMUSG00000074269.10, intron 2 of 5) -13746 ENSMUSG00000093473.1 ENSMUSG00000093473 ENSMUST00000177528 Gm20620 processed_pseudogene Interval_55347 chr14 84236226 84236556 + 0 NA Intergenic Intergenic -109517 ENSMUSG00000115612.1 ENSMUSG00000115612 ENSMUST00000228759 Gm29800 processed_pseudogene Interval_37446 chr12 68949211 68950195 + 0 NA intron (ENSMUSG00000113320.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000113320.1, intron 1 of 1) -20867 ENSMUSG00000113098.1 ENSMUSG00000113098 ENSMUST00000223472 Gm2912 lincRNA Interval_33084 chr11 114289550 114290210 + 0 NA Intergenic Intergenic 38037 ENSMUSG00000075431.6 ENSMUSG00000075431 ENSMUST00000130963 Gm11691 lincRNA Interval_53661 chr14 60706750 60707566 + 0 NA intron (ENSMUSG00000021990.16, intron 3 of 12) protein_coding-intron (ENSMUSG00000021990.16, intron 3 of 12) -25748 ENSMUSG00000021990.16 ENSMUSG00000021990 ENSMUST00000162939 Spata13 protein_coding Interval_59932 chr15 62054650 62055905 + 0 NA intron (ENSMUSG00000097039.8, intron 1 of 6) lincRNA-intron (ENSMUSG00000097039.8, intron 1 of 8) 16020 ENSMUSG00000097039.8 ENSMUSG00000097039 ENSMUST00000182141 Pvt1 lincRNA Interval_13870 chr10 24108990 24109418 + 0 NA exon (ENSMUSG00000037424.6, exon 1 of 1) protein_coding-exon (ENSMUSG00000037424.6, exon 1 of 1) 330 ENSMUSG00000037424.6 ENSMUSG00000037424 ENSMUST00000041180 Taar9 protein_coding Interval_147653 chr7 70718364 70718616 + 0 NA Intergenic Intergenic -33926 ENSMUSG00000089401.1 ENSMUSG00000089401 ENSMUST00000158776 Gm24880 rRNA Interval_142088 chr6 137071379 137072130 + 0 NA intron (ENSMUSG00000030222.13, intron 2 of 4) protein_coding-intron (ENSMUSG00000030222.13, intron 2 of 4) 68309 ENSMUSG00000030222.13 ENSMUSG00000030222 ENSMUST00000149100 Rerg protein_coding Interval_174346 chrX 146131928 146132152 + 0 NA Intergenic Intergenic 36664 ENSMUSG00000083960.1 ENSMUSG00000083960 ENSMUST00000119420 Gm4918 processed_pseudogene Interval_120365 chr4 148122187 148123079 + 0 NA intron (ENSMUSG00000029005.4, intron 1 of 6) protein_coding-intron (ENSMUSG00000029005.4, intron 1 of 6) 8065 ENSMUSG00000029005.4 ENSMUSG00000029005 ENSMUST00000030862 Draxin protein_coding Interval_78661 chr18 16588466 16588928 + 0 NA TTS (ENSMUSG00000024304.14) protein_coding-TTS (ENSMUSG00000024304.14) -140036 ENSMUSG00000085575.1 ENSMUSG00000085575 ENSMUST00000149095 Gm15485 antisense Interval_92535 chr2 60402846 60405111 + 0 NA Intergenic Intergenic -7547 ENSMUSG00000087283.1 ENSMUSG00000087283 ENSMUST00000131457 Gm13580 antisense Interval_164158 chr9 32041540 32042034 + 0 NA Intergenic Intergenic 3071 ENSMUSG00000110845.1 ENSMUSG00000110845 ENSMUST00000216731 Gm47481 processed_pseudogene Interval_92759 chr2 65181001 65181822 + 0 NA intron (ENSMUSG00000034903.18, intron 1 of 3) protein_coding-intron (ENSMUSG00000034903.18, intron 1 of 12) -57345 ENSMUSG00000086881.1 ENSMUSG00000086881 ENSMUST00000137582 Gm13594 antisense Interval_151252 chr7 120239223 120239738 + 0 NA intron (ENSMUSG00000062017.15, intron 13 of 16) protein_coding-intron (ENSMUSG00000062017.15, intron 12 of 30) -37369 ENSMUSG00000030905.5 ENSMUSG00000030905 ENSMUST00000134067 Crym protein_coding Interval_1894 chr1 34386786 34386976 + 0 NA Intergenic Intergenic 19510 ENSMUSG00000101206.1 ENSMUSG00000101206 ENSMUST00000187302 Gm5266 processed_pseudogene Interval_2110 chr1 36488537 36488870 + 0 NA intron (ENSMUSG00000037408.10, intron 1 of 6) protein_coding-intron (ENSMUSG00000037408.10, intron 1 of 6) 14751 ENSMUSG00000104316.1 ENSMUSG00000104316 ENSMUST00000193157 Gm37909 TEC Interval_156495 chr8 48736487 48736698 + 0 NA intron (ENSMUSG00000031561.16, intron 1 of 2) protein_coding-intron (ENSMUSG00000031561.16, intron 1 of 2) -105423 ENSMUSG00000110509.1 ENSMUSG00000110509 ENSMUST00000212961 Gm45772 processed_pseudogene Interval_84822 chr19 17124256 17125587 + 0 NA promoter-TSS (ENSMUSG00000039126.10) protein_coding-promoter-TSS (ENSMUSG00000039126.10) -726 ENSMUSG00000039126.10 ENSMUSG00000039126 ENSMUST00000224117 Prune2 protein_coding Interval_83989 chr19 5963686 5964607 + 0 NA promoter-TSS (ENSMUSG00000024833.15) protein_coding-promoter-TSS (ENSMUSG00000024833.15) 23 ENSMUSG00000024833.15 ENSMUSG00000024833 ENSMUST00000238043 Pola2 protein_coding Interval_30418 chr11 94255104 94255330 + 0 NA Intergenic Intergenic -9212 ENSMUSG00000044177.4 ENSMUSG00000044177 ENSMUST00000131352 Wfikkn2 protein_coding Interval_112851 chr4 45513618 45514917 + 0 NA intron (ENSMUSG00000044813.15, intron 1 of 2) protein_coding-intron (ENSMUSG00000044813.15, intron 1 of 5) -13715 ENSMUSG00000088892.1 ENSMUSG00000088892 ENSMUST00000158267 Gm22518 miRNA Interval_163454 chr9 21518302 21519148 + 0 NA Intergenic Intergenic -7476 ENSMUSG00000057191.13 ENSMUSG00000057191 ENSMUST00000076326 AB124611 protein_coding Interval_96024 chr2 119249696 119251811 + 0 NA Intergenic Intergenic 4380 ENSMUSG00000027315.13 ENSMUSG00000027315 ENSMUST00000134872 Spint1 protein_coding Interval_147693 chr7 72100360 72100594 + 0 NA intron (ENSMUSG00000032776.9, intron 20 of 22) protein_coding-intron (ENSMUSG00000032776.9, intron 20 of 22) -10284 ENSMUSG00000108427.1 ENSMUSG00000108427 ENSMUST00000205418 Gm36696 antisense Interval_23849 chr11 27086307 27087005 + 0 NA TTS (ENSMUSG00000088654.1) snoRNA-TTS (ENSMUSG00000088654.1) 479 ENSMUSG00000088654.1 ENSMUSG00000088654 ENSMUST00000158029 Gm24850 snoRNA Interval_146975 chr7 56707080 56708323 + 0 NA Intergenic Intergenic -40573 ENSMUSG00000108488.1 ENSMUSG00000108488 ENSMUST00000206218 Gm44979 processed_pseudogene Interval_79256 chr18 28015464 28016022 + 0 NA Intergenic Intergenic 173074 ENSMUSG00000117416.1 ENSMUSG00000117416 ENSMUST00000234906 Gm5064 processed_pseudogene Interval_160728 chr8 111860607 111861408 + 0 NA Intergenic Intergenic -6716 ENSMUSG00000031954.6 ENSMUSG00000031954 ENSMUST00000034432 Cfdp1 protein_coding Interval_81722 chr18 63897291 63897463 + 0 NA TTS (ENSMUSG00000118258.1) processed_pseudogene-TTS (ENSMUSG00000118258.1) 1654 ENSMUSG00000118258.1 ENSMUSG00000118258 ENSMUST00000237352 Gm19076 processed_pseudogene Interval_164230 chr9 33233746 33234198 + 0 NA intron (ENSMUSG00000111645.1, intron 2 of 4) lincRNA-intron (ENSMUSG00000111645.1, intron 2 of 4) -62272 ENSMUSG00000111467.1 ENSMUSG00000111467 ENSMUST00000215382 Gm47775 lincRNA Interval_93164 chr2 70779324 70780996 + 0 NA intron (ENSMUSG00000041997.16, intron 1 of 7) protein_coding-intron (ENSMUSG00000041997.16, intron 2 of 19) -62256 ENSMUSG00000041997.16 ENSMUSG00000041997 ENSMUST00000124629 Tlk1 protein_coding Interval_95824 chr2 116948604 116950839 + 0 NA Intergenic Intergenic -13516 ENSMUSG00000087910.1 ENSMUSG00000087910 ENSMUST00000157285 Gm24914 misc_RNA Interval_119353 chr4 137094264 137094557 + 0 NA Intergenic Intergenic 23172 ENSMUSG00000085542.1 ENSMUSG00000085542 ENSMUST00000132824 1700037C06Rik lincRNA Interval_89887 chr2 26236835 26237672 + 0 NA exon (ENSMUSG00000036327.18, exon 1 of 13) protein_coding-exon (ENSMUSG00000036327.18, exon 1 of 13) -11882 ENSMUSG00000036327.18 ENSMUSG00000036327 ENSMUST00000036187 Qsox2 protein_coding Interval_150116 chr7 106834252 106834460 + 0 NA promoter-TSS (ENSMUSG00000056863.5) protein_coding-promoter-TSS (ENSMUSG00000056863.5) -463 ENSMUSG00000056863.5 ENSMUSG00000056863 ENSMUST00000208864 Olfr702 protein_coding Interval_103476 chr3 42324084 42325448 + 0 NA Intergenic Intergenic 38011 ENSMUSG00000104089.1 ENSMUSG00000104089 ENSMUST00000195689 Gm38274 processed_pseudogene Interval_70862 chr17 15458032 15458276 + 0 NA Intergenic Intergenic -1651 ENSMUSG00000116985.1 ENSMUSG00000116985 ENSMUST00000231639 Gm49669 processed_pseudogene Interval_102275 chr3 20291163 20292445 + 0 NA Intergenic Intergenic -16603 ENSMUSG00000105208.1 ENSMUSG00000105208 ENSMUST00000196460 Gm43525 lincRNA Interval_114793 chr4 85309199 85310489 + 0 NA intron (ENSMUSG00000028488.15, intron 1 of 7) protein_coding-intron (ENSMUSG00000028488.15, intron 1 of 8) -64082 ENSMUSG00000081862.1 ENSMUSG00000081862 ENSMUST00000121508 Gm12413 processed_pseudogene Interval_154254 chr8 13828820 13829765 + 0 NA Intergenic Intergenic 9097 ENSMUSG00000057116.5 ENSMUSG00000057116 ENSMUST00000071308 AF366264 protein_coding Interval_147057 chr7 60243810 60244658 + 0 NA Intergenic Intergenic -28626 ENSMUSG00000109451.1 ENSMUSG00000109451 ENSMUST00000208834 Gm18129 processed_pseudogene Interval_121211 chr4 154085769 154086046 + 0 NA promoter-TSS (ENSMUSG00000029026.17) protein_coding-promoter-TSS (ENSMUSG00000029026.17) -7572 ENSMUSG00000087071.1 ENSMUSG00000087071 ENSMUST00000143429 Trp73os antisense Interval_148993 chr7 90955334 90955618 + 0 NA intron (ENSMUSG00000052572.19, intron 6 of 27) protein_coding-intron (ENSMUSG00000052572.19, intron 6 of 27) -39833 ENSMUSG00000109562.1 ENSMUSG00000109562 ENSMUST00000207744 Gm45178 TEC Interval_168555 chr9 83540012 83540725 + 0 NA Intergenic Intergenic -7961 ENSMUSG00000032261.16 ENSMUSG00000032261 ENSMUST00000185664 Sh3bgrl2 protein_coding Interval_80374 chr18 40284789 40285500 + 0 NA intron (ENSMUSG00000051401.7, intron 2 of 2) protein_coding-intron (ENSMUSG00000051401.7, intron 1 of 1) -26649 ENSMUSG00000117674.1 ENSMUSG00000117674 ENSMUST00000236700 Gm31087 antisense Interval_57724 chr15 16899115 16899516 + 0 NA Intergenic Intergenic -48351 ENSMUSG00000115460.1 ENSMUSG00000115460 ENSMUST00000227900 Gm49127 antisense Interval_145963 chr7 42700141 42700704 + 0 NA Intergenic Intergenic 5947 ENSMUSG00000091594.2 ENSMUSG00000091594 ENSMUST00000180131 Gm17067 protein_coding Interval_38670 chr12 80951341 80952440 + 0 NA Intergenic Intergenic 6358 ENSMUSG00000021134.17 ENSMUSG00000021134 ENSMUST00000151036 Srsf5 protein_coding Interval_27612 chr11 69045508 69046386 + 0 NA exon (ENSMUSG00000020897.12, exon 1 of 8) protein_coding-exon (ENSMUSG00000020897.12, exon 1 of 8) -2581 ENSMUSG00000020897.12 ENSMUSG00000020897 ENSMUST00000140531 Aurkb protein_coding Interval_90557 chr2 31130734 31131502 + 0 NA intron (ENSMUSG00000075415.13, intron 1 of 5) protein_coding-intron (ENSMUSG00000075415.13, intron 1 of 13) -14806 ENSMUSG00000075415.13 ENSMUSG00000075415 ENSMUST00000136085 Fnbp1 protein_coding Interval_73659 chr17 42500402 42501657 + 0 NA intron (ENSMUSG00000042256.5, intron 2 of 2) protein_coding-intron (ENSMUSG00000042256.5, intron 3 of 3) 110366 ENSMUSG00000043972.8 ENSMUSG00000043972 ENSMUST00000068355 Opn5 protein_coding Interval_46822 chr13 71587340 71587992 + 0 NA intron (ENSMUSG00000113358.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000113358.1, intron 1 of 1) 37308 ENSMUSG00000113305.1 ENSMUSG00000113305 ENSMUST00000220461 Gm47811 processed_pseudogene Interval_55931 chr14 102895115 102895305 + 0 NA Intergenic Intergenic -60452 ENSMUSG00000115816.1 ENSMUSG00000115816 ENSMUST00000227101 Gm34589 processed_transcript Interval_110862 chr4 9132104 9132613 + 0 NA Intergenic Intergenic -77645 ENSMUSG00000075958.1 ENSMUSG00000075958 ENSMUST00000082782 Gm23423 snRNA Interval_89175 chr2 17861968 17862234 + 0 NA Intergenic Intergenic -64117 ENSMUSG00000081851.1 ENSMUSG00000081851 ENSMUST00000120245 Gm13323 processed_pseudogene Interval_153915 chr8 10994103 10995004 + 0 NA intron (ENSMUSG00000038894.7, intron 1 of 1) protein_coding-intron (ENSMUSG00000038894.7, intron 1 of 1) 13905 ENSMUSG00000038894.7 ENSMUSG00000038894 ENSMUST00000040514 Irs2 protein_coding Interval_132865 chr5 148387687 148388400 + 0 NA intron (ENSMUSG00000041313.14, intron 1 of 5) protein_coding-intron (ENSMUSG00000041313.14, intron 1 of 12) 11748 ENSMUSG00000041313.14 ENSMUSG00000041313 ENSMUST00000201348 Slc7a1 protein_coding Interval_81410 chr18 60594108 60597363 + 0 NA exon (ENSMUSG00000043079.17, exon 3 of 3) protein_coding-exon (ENSMUSG00000043079.17, exon 3 of 3) -3947 ENSMUSG00000049173.8 ENSMUSG00000049173 ENSMUST00000056533 Myoz3 protein_coding Interval_112287 chr4 40078663 40078971 + 0 NA Intergenic Intergenic 9716 ENSMUSG00000083202.1 ENSMUSG00000083202 ENSMUST00000119112 Gm12388 processed_pseudogene Interval_29697 chr11 86177870 86178425 + 0 NA intron (ENSMUSG00000034329.16, intron 6 of 19) protein_coding-intron (ENSMUSG00000034329.16, intron 6 of 19) -7182 ENSMUSG00000080823.1 ENSMUSG00000080823 ENSMUST00000121382 Atp5l-ps2 processed_pseudogene Interval_84711 chr19 15847120 15847737 + 0 NA Intergenic Intergenic 44370 ENSMUSG00000117995.1 ENSMUSG00000117995 ENSMUST00000237461 Gm50348 lincRNA Interval_67148 chr16 43918978 43919462 + 0 NA intron (ENSMUSG00000022701.18, intron 6 of 15) protein_coding-intron (ENSMUSG00000022701.18, intron 6 of 7) 29420 ENSMUSG00000022701.18 ENSMUSG00000022701 ENSMUST00000122440 Ccdc191 protein_coding Interval_8823 chr1 151389922 151390647 + 0 NA intron (ENSMUSG00000052748.14, intron 14 of 19) protein_coding-intron (ENSMUSG00000052748.14, intron 14 of 19) 14323 ENSMUSG00000052748.14 ENSMUSG00000052748 ENSMUST00000185247 Swt1 protein_coding Interval_40471 chr12 105062535 105064214 + 0 NA Intergenic Intergenic 30686 ENSMUSG00000021102.4 ENSMUSG00000021102 ENSMUST00000220494 Glrx5 protein_coding Interval_94888 chr2 100833678 100834681 + 0 NA Intergenic Intergenic -206136 ENSMUSG00000095203.1 ENSMUSG00000095203 ENSMUST00000118584 Gm13810 processed_pseudogene Interval_140375 chr6 117647171 117647488 + 0 NA intron (ENSMUSG00000099869.6, intron 3 of 3) lincRNA-intron (ENSMUSG00000099869.6, intron 4 of 4) -34759 ENSMUSG00000107785.1 ENSMUSG00000107785 ENSMUST00000205216 Gm45083 lincRNA Interval_76389 chr17 79840380 79842088 + 0 NA Intergenic Intergenic 14896 ENSMUSG00000059811.13 ENSMUSG00000059811 ENSMUST00000222243 Atl2 protein_coding Interval_124741 chr5 53630963 53631967 + 0 NA intron (ENSMUSG00000039191.12, intron 3 of 6) protein_coding-intron (ENSMUSG00000039191.12, intron 2 of 10) -7167 ENSMUSG00000039191.12 ENSMUSG00000039191 ENSMUST00000202092 Rbpj protein_coding Interval_77678 chr17 94079324 94080201 + 0 NA Intergenic Intergenic 52509 ENSMUSG00000117543.1 ENSMUSG00000117543 ENSMUST00000235005 Gm50004 processed_pseudogene Interval_95961 chr2 118700263 118700967 + 0 NA exon (ENSMUSG00000078137.1, exon 1 of 1) protein_coding-exon (ENSMUSG00000078137.1, exon 1 of 1) 3348 ENSMUSG00000078137.1 ENSMUSG00000078137 ENSMUST00000104937 Ankrd63 protein_coding Interval_143233 chr7 4651498 4652163 + 0 NA intron (ENSMUSG00000052296.7, intron 1 of 3) protein_coding-intron (ENSMUSG00000052296.7, intron 1 of 23) -6830 ENSMUSG00000108477.1 ENSMUSG00000108477 ENSMUST00000205812 Gm44878 TEC Interval_108640 chr3 129706068 129706423 + 0 NA exon (ENSMUSG00000028017.7, exon 15 of 24) protein_coding-exon (ENSMUSG00000028017.7, exon 15 of 24) 18832 ENSMUSG00000028017.7 ENSMUSG00000028017 ENSMUST00000198093 Egf protein_coding Interval_167862 chr9 73129655 73131206 + 0 NA Intergenic Intergenic -2259 ENSMUSG00000103556.1 ENSMUSG00000103556 ENSMUST00000192321 Gm38215 TEC Interval_61967 chr15 85561311 85561610 + 0 NA intron (ENSMUSG00000022382.15, intron 1 of 3) protein_coding-intron (ENSMUSG00000022382.15, intron 1 of 3) 5562 ENSMUSG00000022382.15 ENSMUSG00000022382 ENSMUST00000230299 Wnt7b protein_coding Interval_138740 chr6 91564313 91564526 + 0 NA Intergenic Intergenic -30339 ENSMUSG00000108335.1 ENSMUSG00000108335 ENSMUST00000206407 Gm45215 processed_pseudogene Interval_14162 chr10 28216841 28217095 + 0 NA intron (ENSMUSG00000019889.10, intron 2 of 2) protein_coding-intron (ENSMUSG00000019889.10, intron 2 of 31) -2847 ENSMUSG00000076377.1 ENSMUSG00000076377 ENSMUST00000102422 Gm22370 miRNA Interval_1368 chr1 21024401 21025616 + 0 NA intron (ENSMUSG00000041779.5, intron 2 of 7) protein_coding-intron (ENSMUSG00000041779.5, intron 2 of 10) 18648 ENSMUSG00000041779.5 ENSMUSG00000041779 ENSMUST00000187210 Tram2 protein_coding Interval_68738 chr16 85260510 85260797 + 0 NA Intergenic Intergenic 91804 ENSMUSG00000098604.1 ENSMUSG00000098604 ENSMUST00000184264 Gm27295 snoRNA Interval_2722 chr1 43898205 43900306 + 0 NA TTS (ENSMUSG00000101395.1) processed_pseudogene-TTS (ENSMUSG00000101395.1) 961 ENSMUSG00000101395.1 ENSMUSG00000101395 ENSMUST00000189286 Gm8241 processed_pseudogene Interval_36525 chr12 48340404 48341057 + 0 NA Intergenic Intergenic -154489 ENSMUSG00000112085.1 ENSMUSG00000112085 ENSMUST00000218671 Gm48587 unprocessed_pseudogene Interval_163123 chr9 15434321 15434724 + 0 NA Intergenic Intergenic 5949 ENSMUSG00000111508.1 ENSMUSG00000111508 ENSMUST00000214794 Gm48634 processed_pseudogene Interval_17295 chr10 75679382 75680305 + 0 NA intron (ENSMUSG00000020196.10, intron 29 of 36) protein_coding-intron (ENSMUSG00000020196.10, intron 29 of 36) -35835 ENSMUSG00000006342.15 ENSMUSG00000006342 ENSMUST00000077610 Susd2 protein_coding Interval_141749 chr6 134207508 134208784 + 0 NA intron (ENSMUSG00000030199.16, intron 2 of 4) protein_coding-intron (ENSMUSG00000030199.16, intron 2 of 7) -25454 ENSMUSG00000030199.16 ENSMUSG00000030199 ENSMUST00000145869 Etv6 protein_coding Interval_82302 chr18 70477912 70478386 + 0 NA intron (ENSMUSG00000079608.10, intron 5 of 8) protein_coding-intron (ENSMUSG00000079608.10, intron 5 of 8) 4949 ENSMUSG00000079608.10 ENSMUSG00000079608 ENSMUST00000173612 Stard6 protein_coding Interval_74389 chr17 49855748 49856181 + 0 NA intron (ENSMUSG00000023999.14, intron 15 of 22) protein_coding-intron (ENSMUSG00000023999.14, intron 15 of 22) -34139 ENSMUSG00000090012.1 ENSMUSG00000090012 ENSMUST00000159971 Gm16555 antisense Interval_6006 chr1 93854099 93854346 + 0 NA Intergenic Intergenic -7084 ENSMUSG00000094651.2 ENSMUSG00000094651 ENSMUST00000187896 Gal3st2 protein_coding Interval_106608 chr3 97710038 97710686 + 0 NA exon (ENSMUSG00000038170.15, exon 33 of 47) protein_coding-exon (ENSMUSG00000038170.15, exon 33 of 47) -19800 ENSMUSG00000098381.1 ENSMUSG00000098381 ENSMUST00000184178 Mir7225 miRNA Interval_30556 chr11 95100392 95101531 + 0 NA Intergenic Intergenic -19158 ENSMUSG00000001510.8 ENSMUSG00000001510 ENSMUST00000092768 Dlx3 protein_coding Interval_67200 chr16 44362318 44362723 + 0 NA intron (ENSMUSG00000043065.12, intron 2 of 7) protein_coding-intron (ENSMUSG00000043065.12, intron 4 of 17) 15106 ENSMUSG00000043065.12 ENSMUSG00000043065 ENSMUST00000126228 Spice1 protein_coding Interval_141851 chr6 134926840 134929086 + 0 NA Intergenic Intergenic -1170 ENSMUSG00000098318.7 ENSMUSG00000098318 ENSMUST00000184504 Lockd lincRNA Interval_83852 chr19 5094108 5094936 + 0 NA intron (ENSMUSG00000024873.7, intron 2 of 5) protein_coding-intron (ENSMUSG00000024873.7, intron 2 of 5) 3860 ENSMUSG00000024873.7 ENSMUSG00000024873 ENSMUST00000235638 Cnih2 protein_coding Interval_78489 chr18 13601851 13602322 + 0 NA promoter-TSS (ENSMUSG00000117608.1) lincRNA-promoter-TSS (ENSMUSG00000117608.1) -686 ENSMUSG00000117608.1 ENSMUSG00000117608 ENSMUST00000234112 AC103362.1 lincRNA Interval_144418 chr7 25030239 25030842 + 0 NA intron (ENSMUSG00000003378.9, intron 13 of 20) protein_coding-intron (ENSMUSG00000003378.9, intron 12 of 19) -24597 ENSMUSG00000040907.15 ENSMUSG00000040907 ENSMUST00000125444 Atp1a3 protein_coding Interval_8288 chr1 136948749 136949716 + 0 NA promoter-TSS (ENSMUSG00000026398.14) protein_coding-promoter-TSS (ENSMUSG00000026398.14) -59 ENSMUSG00000026398.14 ENSMUSG00000026398 ENSMUST00000195428 Nr5a2 protein_coding Interval_165025 chr9 44007153 44007494 + 0 NA Intergenic Intergenic -8730 ENSMUSG00000110815.1 ENSMUSG00000110815 ENSMUST00000214791 Gm47345 TEC Interval_74337 chr17 49054813 49055021 + 0 NA intron (ENSMUSG00000040490.4, intron 1 of 2) protein_coding-intron (ENSMUSG00000040490.4, intron 1 of 2) 41516 ENSMUSG00000105424.1 ENSMUSG00000105424 ENSMUST00000200509 Gm44304 miRNA Interval_81098 chr18 53880619 53881547 + 0 NA intron (ENSMUSG00000073563.3, intron 1 of 12) protein_coding-intron (ENSMUSG00000073563.3, intron 1 of 12) 18895 ENSMUSG00000073563.3 ENSMUSG00000073563 ENSMUST00000236399 Csnk1g3 protein_coding Interval_61436 chr15 81606306 81607327 + 0 NA intron (ENSMUSG00000055024.12, intron 2 of 10) protein_coding-intron (ENSMUSG00000055024.12, intron 2 of 30) -14246 ENSMUSG00000055024.12 ENSMUSG00000055024 ENSMUST00000206431 Ep300 protein_coding Interval_135349 chr6 38550768 38552505 + 0 NA promoter-TSS (ENSMUSG00000029823.16) protein_coding-promoter-TSS (ENSMUSG00000029823.16) 302 ENSMUSG00000029823.16 ENSMUSG00000029823 ENSMUST00000160430 Luc7l2 protein_coding Interval_36733 chr12 52700225 52701547 + 0 NA intron (ENSMUSG00000061603.8, intron 1 of 13) protein_coding-intron (ENSMUSG00000061603.8, intron 1 of 13) 52222 ENSMUSG00000112251.1 ENSMUSG00000112251 ENSMUST00000219288 Gm47488 processed_pseudogene Interval_61845 chr15 84616865 84617212 + 0 NA Intergenic Intergenic -39921 ENSMUSG00000116409.1 ENSMUSG00000116409 ENSMUST00000229199 Gm34095 lincRNA Interval_97620 chr2 140759301 140760728 + 0 NA intron (ENSMUSG00000068205.14, intron 3 of 3) protein_coding-intron (ENSMUSG00000068205.14, intron 3 of 17) -88564 ENSMUSG00000051379.12 ENSMUSG00000051379 ENSMUST00000056760 Flrt3 protein_coding Interval_10238 chr1 167393252 167394501 + 0 NA promoter-TSS (ENSMUSG00000026688.5) protein_coding-promoter-TSS (ENSMUSG00000026688.5) -35 ENSMUSG00000026688.5 ENSMUSG00000026688 ENSMUST00000028005 Mgst3 protein_coding Interval_52016 chr14 34627490 34628171 + 0 NA Intergenic Intergenic -33877 ENSMUSG00000115575.1 ENSMUSG00000115575 ENSMUST00000227643 Gm49024 lincRNA Interval_119712 chr4 139397002 139397479 + 0 NA intron (ENSMUSG00000066036.14, intron 10 of 105) protein_coding-intron (ENSMUSG00000066036.14, intron 10 of 105) 16581 ENSMUSG00000066036.14 ENSMUSG00000066036 ENSMUST00000135534 Ubr4 protein_coding Interval_112252 chr4 38519186 38519743 + 0 NA Intergenic Intergenic -144345 ENSMUSG00000081427.1 ENSMUSG00000081427 ENSMUST00000122005 Gm12382 processed_pseudogene Interval_49490 chr13 112409700 112410284 + 0 NA Intergenic Intergenic 7373 ENSMUSG00000114656.1 ENSMUSG00000114656 ENSMUST00000224082 2810403G07Rik lincRNA Interval_6601 chr1 118127886 118128984 + 0 NA Intergenic Intergenic -48107 ENSMUSG00000102030.1 ENSMUSG00000102030 ENSMUST00000186264 Gm29106 protein_coding Interval_132017 chr5 142319255 142320051 + 0 NA Intergenic Intergenic 36547 ENSMUSG00000097947.1 ENSMUSG00000097947 ENSMUST00000182990 Gm26970 processed_pseudogene Interval_92604 chr2 61265088 61265936 + 0 NA Intergenic Intergenic -14766 ENSMUSG00000077464.1 ENSMUSG00000077464 ENSMUST00000104276 Gm26422 snoRNA Interval_49288 chr13 110302042 110302257 + 0 NA Intergenic Intergenic 3342 ENSMUSG00000045609.6 ENSMUSG00000045609 ENSMUST00000058710 Gm5455 processed_pseudogene Interval_113503 chr4 55386424 55386719 + 0 NA intron (ENSMUSG00000028426.10, intron 9 of 9) protein_coding-intron (ENSMUSG00000028426.10, intron 9 of 9) 6130 ENSMUSG00000084144.1 ENSMUSG00000084144 ENSMUST00000120819 Gm12516 processed_pseudogene Interval_133273 chr5 151020645 151021024 + 0 NA Intergenic Intergenic -11533 ENSMUSG00000106963.1 ENSMUSG00000106963 ENSMUST00000201408 Gm8675 processed_pseudogene Interval_133156 chr5 150245286 150245841 + 0 NA intron (ENSMUSG00000056602.12, intron 1 of 3) protein_coding-intron (ENSMUSG00000056602.12, intron 2 of 4) 1700 ENSMUSG00000107082.1 ENSMUSG00000107082 ENSMUST00000201709 Gm36378 processed_pseudogene Interval_2681 chr1 43286064 43287497 + 0 NA intron (ENSMUSG00000099576.1, intron 2 of 5) lincRNA-intron (ENSMUSG00000099576.1, intron 2 of 5) 16097 ENSMUSG00000099694.1 ENSMUSG00000099694 ENSMUST00000187749 Gm29610 processed_pseudogene Interval_149616 chr7 100074368 100074972 + 0 NA Intergenic Intergenic 26790 ENSMUSG00000030726.16 ENSMUSG00000030726 ENSMUST00000156202 Pold3 protein_coding Interval_90766 chr2 32492134 32492371 + 0 NA TTS (ENSMUSG00000103175.1) TEC-TTS (ENSMUSG00000103175.1) 4264 ENSMUSG00000103175.1 ENSMUSG00000103175 ENSMUST00000195599 Gm37169 TEC Interval_134589 chr6 29788747 29789946 + 0 NA intron (ENSMUSG00000029772.17, intron 1 of 1) protein_coding-intron (ENSMUSG00000029772.17, intron 1 of 16) 38585 ENSMUSG00000081564.1 ENSMUSG00000081564 ENSMUST00000119868 Gm13717 processed_pseudogene Interval_119837 chr4 140377092 140378340 + 0 NA Intergenic Intergenic -2914 ENSMUSG00000087084.1 ENSMUSG00000087084 ENSMUST00000126252 Gm13016 lincRNA Interval_117909 chr4 126997879 126999639 + 0 NA Intergenic Intergenic 15320 ENSMUSG00000081609.1 ENSMUSG00000081609 ENSMUST00000117303 Gm12939 processed_pseudogene Interval_138851 chr6 92559197 92559694 + 0 NA intron (ENSMUSG00000030020.13, intron 2 of 8) protein_coding-intron (ENSMUSG00000030020.13, intron 2 of 8) -2332 ENSMUSG00000098130.1 ENSMUSG00000098130 ENSMUST00000182175 Gm17797 processed_pseudogene Interval_154300 chr8 14132485 14133123 + 0 NA intron (ENSMUSG00000047495.15, intron 1 of 14) protein_coding-intron (ENSMUSG00000047495.15, intron 1 of 15) -3506 ENSMUSG00000085371.1 ENSMUSG00000085371 ENSMUST00000128343 Gm3160 processed_pseudogene Interval_20567 chr10 119103250 119104048 + 0 NA TTS (ENSMUSG00000100681.1) lincRNA-TTS (ENSMUSG00000100681.1) -7975 ENSMUSG00000112609.1 ENSMUSG00000112609 ENSMUST00000220151 Gm47480 lincRNA Interval_28068 chr11 72613778 72614534 + 0 NA intron (ENSMUSG00000020794.13, intron 1 of 4) protein_coding-intron (ENSMUSG00000020794.13, intron 1 of 5) 1994 ENSMUSG00000064567.1 ENSMUSG00000064567 ENSMUST00000082633 Gm24143 snoRNA Interval_168769 chr9 86798148 86799411 + 0 NA promoter-TSS (ENSMUSG00000033419.16) protein_coding-promoter-TSS (ENSMUSG00000033419.16) -11924 ENSMUSG00000103891.1 ENSMUSG00000103891 ENSMUST00000192170 Gm37941 TEC Interval_130046 chr5 123896561 123897610 + 0 NA Intergenic Intergenic -10190 ENSMUSG00000023106.15 ENSMUSG00000023106 ENSMUST00000166233 Denr protein_coding Interval_21264 chr10 127549410 127550116 + 0 NA intron (ENSMUSG00000040249.15, intron 1 of 5) protein_coding-intron (ENSMUSG00000040249.15, intron 67 of 88) -6555 ENSMUSG00000040249.15 ENSMUSG00000040249 ENSMUST00000118455 Lrp1 protein_coding Interval_121585 chr5 3630087 3630573 + 0 NA exon (ENSMUSG00000104950.1, exon 1 of 1) antisense-exon (ENSMUSG00000104950.1, exon 1 of 1) 1392 ENSMUSG00000104950.1 ENSMUSG00000104950 ENSMUST00000199632 4833413G10Rik antisense Interval_174674 chrX 162814531 162815492 + 0 NA intron (ENSMUSG00000038344.14, intron 1 of 10) protein_coding-intron (ENSMUSG00000038344.14, intron 1 of 9) 14443 ENSMUSG00000038344.14 ENSMUSG00000038344 ENSMUST00000150080 Txlng protein_coding Interval_31227 chr11 99008107 99008582 + 0 NA intron (ENSMUSG00000020914.17, intron 17 of 35) protein_coding-intron (ENSMUSG00000020914.17, intron 17 of 35) 8808 ENSMUSG00000065262.1 ENSMUSG00000065262 ENSMUST00000083328 Gm23451 snoRNA Interval_32800 chr11 110781279 110782495 + 0 NA Intergenic Intergenic -186146 ENSMUSG00000051497.15 ENSMUSG00000051497 ENSMUST00000178798 Kcnj16 protein_coding Interval_100436 chr2 169005255 169007233 + 0 NA Intergenic Intergenic -13781 ENSMUSG00000052368.2 ENSMUSG00000052368 ENSMUST00000063891 Gm9873 lincRNA Interval_105543 chr3 87542360 87543066 + 0 NA Intergenic Intergenic -7386 ENSMUSG00000118505.1 ENSMUSG00000118505 ENSMUST00000238853 ETV3L protein_coding Interval_24299 chr11 32190515 32191045 + 0 NA exon (ENSMUSG00000020279.10, exon 7 of 7) protein_coding-exon (ENSMUSG00000020279.10, exon 7 of 7) 5775 ENSMUSG00000081613.1 ENSMUSG00000081613 ENSMUST00000121140 Gm12109 processed_pseudogene Interval_95543 chr2 112088564 112089242 + 0 NA TTS (ENSMUSG00000074945.3) protein_coding-TTS (ENSMUSG00000074945.3) 7878 ENSMUSG00000074945.3 ENSMUSG00000074945 ENSMUST00000099598 Olfr1314 protein_coding Interval_3957 chr1 65073122 65073706 + 0 NA intron (ENSMUSG00000025952.15, intron 1 of 2) protein_coding-intron (ENSMUSG00000025952.15, intron 1 of 2) 107 ENSMUSG00000025952.15 ENSMUSG00000025952 ENSMUST00000114064 Crygc protein_coding Interval_141757 chr6 134252064 134252662 + 0 NA intron (ENSMUSG00000030199.16, intron 2 of 2) protein_coding-intron (ENSMUSG00000030199.16, intron 5 of 7) -5997 ENSMUSG00000108263.1 ENSMUSG00000108263 ENSMUST00000204426 1700051K13Rik TEC Interval_476 chr1 6142286 6144224 + 0 NA Intergenic Intergenic 72038 ENSMUSG00000090031.2 ENSMUSG00000090031 ENSMUST00000097832 4732440D04Rik antisense Interval_52130 chr14 36944083 36944371 + 0 NA intron (ENSMUSG00000058690.14, intron 1 of 10) protein_coding-intron (ENSMUSG00000058690.14, intron 1 of 9) -35046 ENSMUSG00000058690.14 ENSMUSG00000058690 ENSMUST00000182635 Ccser2 protein_coding Interval_118940 chr4 134578390 134579474 + 0 NA intron (ENSMUSG00000037306.13, intron 6 of 8) protein_coding-intron (ENSMUSG00000037306.13, intron 7 of 12) -11081 ENSMUSG00000099289.1 ENSMUSG00000099289 ENSMUST00000185007 Mir6403 miRNA Interval_72841 chr17 32505623 32507225 + 0 NA promoter-TSS (ENSMUSG00000091586.2) protein_coding-promoter-TSS (ENSMUSG00000091586.2) 374 ENSMUSG00000091586.2 ENSMUSG00000091586 ENSMUST00000236129 Cyp4f17 protein_coding Interval_88794 chr2 11067384 11067550 + 0 NA Intergenic Intergenic 20446 ENSMUSG00000084560.1 ENSMUSG00000084560 ENSMUST00000122611 Gm26478 snRNA Interval_144806 chr7 28361228 28362828 + 0 NA exon (ENSMUSG00000037552.17, exon 18 of 19) protein_coding-exon (ENSMUSG00000037552.17, exon 18 of 19) 10052 ENSMUSG00000037552.17 ENSMUSG00000037552 ENSMUST00000147887 Plekhg2 protein_coding Interval_118537 chr4 132353414 132354325 + 0 NA promoter-TSS (ENSMUSG00000064387.1) snoRNA-promoter-TSS (ENSMUSG00000064387.1) -206 ENSMUSG00000085241.7 ENSMUSG00000085241 ENSMUST00000136127 Snhg3 processed_transcript Interval_92276 chr2 57919287 57919495 + 0 NA Intergenic Intergenic 66626 ENSMUSG00000110205.1 ENSMUSG00000110205 ENSMUST00000209502 Gm33594 lincRNA Interval_73106 chr17 34849734 34850838 + 0 NA promoter-TSS (ENSMUSG00000040356.16) protein_coding-promoter-TSS (ENSMUSG00000040356.16) -94 ENSMUSG00000040356.16 ENSMUSG00000040356 ENSMUST00000172966 Skiv2l protein_coding Interval_27124 chr11 63136859 63137302 + 0 NA intron (ENSMUSG00000018217.12, intron 3 of 4) protein_coding-intron (ENSMUSG00000018217.12, intron 3 of 4) 4277 ENSMUSG00000018217.12 ENSMUSG00000018217 ENSMUST00000108700 Pmp22 protein_coding Interval_96822 chr2 128605243 128605800 + 0 NA intron (ENSMUSG00000109931.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000109931.1, intron 1 of 2) -1464 ENSMUSG00000080789.1 ENSMUSG00000080789 ENSMUST00000118288 Gm14007 processed_pseudogene Interval_9761 chr1 161920488 161921231 + 0 NA Intergenic Intergenic 28712 ENSMUSG00000103158.5 ENSMUSG00000103158 ENSMUST00000194266 Gm31925 lincRNA Interval_167358 chr9 67780865 67781065 + 0 NA Intergenic Intergenic -20757 ENSMUSG00000055125.7 ENSMUSG00000055125 ENSMUST00000186205 M5C1000I18Rik lincRNA Interval_97928 chr2 145835518 145835937 + 0 NA intron (ENSMUSG00000001768.16, intron 4 of 12) protein_coding-intron (ENSMUSG00000001768.16, intron 4 of 12) -42559 ENSMUSG00000092758.1 ENSMUSG00000092758 ENSMUST00000175017 Gm25026 miRNA Interval_40033 chr12 100636685 100637647 + 0 NA intron (ENSMUSG00000021180.9, intron 3 of 16) protein_coding-intron (ENSMUSG00000021180.9, intron 3 of 17) -10373 ENSMUSG00000113250.1 ENSMUSG00000113250 ENSMUST00000221653 Gm48585 TEC Interval_11382 chr1 181410884 181411107 + 0 NA intron (ENSMUSG00000026514.14, intron 3 of 5) protein_coding-intron (ENSMUSG00000026514.14, intron 3 of 5) -10239 ENSMUSG00000089888.1 ENSMUSG00000089888 ENSMUST00000159474 Gm16547 processed_pseudogene Interval_134593 chr6 29816882 29817886 + 0 NA intron (ENSMUSG00000029772.17, intron 1 of 17) protein_coding-intron (ENSMUSG00000029772.17, intron 1 of 16) -59295 ENSMUSG00000029772.17 ENSMUSG00000029772 ENSMUST00000128837 Ahcyl2 protein_coding Interval_108231 chr3 122640140 122640800 + 0 NA Intergenic Intergenic -7199 ENSMUSG00000106562.1 ENSMUSG00000106562 ENSMUST00000199912 Gm5981 processed_pseudogene Interval_153491 chr7 145176852 145177505 + 0 NA Intergenic Intergenic 14182 ENSMUSG00000108967.1 ENSMUSG00000108967 ENSMUST00000207878 Gm45181 lincRNA Interval_61419 chr15 81488234 81489345 + 0 NA Intergenic Intergenic -2408 ENSMUSG00000115917.1 ENSMUSG00000115917 ENSMUST00000231011 Gm49406 processed_pseudogene Interval_11029 chr1 178544119 178545379 + 0 NA intron (ENSMUSG00000026494.12, intron 2 of 3) protein_coding-intron (ENSMUSG00000026494.12, intron 2 of 14) 15624 ENSMUSG00000026494.12 ENSMUSG00000026494 ENSMUST00000160789 Kif26b protein_coding Interval_85382 chr19 25360254 25361849 + 0 NA intron (ENSMUSG00000032702.16, intron 3 of 13) protein_coding-intron (ENSMUSG00000032702.16, intron 3 of 13) -13848 ENSMUSG00000118238.1 ENSMUSG00000118238 ENSMUST00000235913 Gm34432 processed_pseudogene Interval_85059 chr19 21894363 21895985 + 0 NA Intergenic Intergenic -42206 ENSMUSG00000045104.9 ENSMUSG00000045104 ENSMUST00000060477 Ldhb-ps processed_pseudogene Interval_172406 chrX 18161691 18164204 + 0 NA exon (ENSMUSG00000037369.17, exon 1 of 29) protein_coding-exon (ENSMUSG00000037369.17, exon 1 of 29) 17090 ENSMUSG00000025043.3 ENSMUSG00000025043 ENSMUST00000026018 Dusp21 protein_coding Interval_67502 chr16 49972212 49973253 + 0 NA Intergenic Intergenic 117087 ENSMUSG00000055447.19 ENSMUSG00000055447 ENSMUST00000229104 Cd47 protein_coding Interval_145008 chr7 29394917 29395292 + 0 NA intron (ENSMUSG00000030583.16, intron 5 of 22) protein_coding-intron (ENSMUSG00000030583.16, intron 5 of 22) -17499 ENSMUSG00000030583.16 ENSMUSG00000030583 ENSMUST00000183085 Sipa1l3 protein_coding Interval_89661 chr2 24263722 24264110 + 0 NA intron (ENSMUSG00000083172.1, intron 2 of 3) unprocessed_pseudogene-intron (ENSMUSG00000083172.1, intron 2 of 3) 2422 ENSMUSG00000083172.1 ENSMUSG00000083172 ENSMUST00000122072 Gm13409 unprocessed_pseudogene Interval_148927 chr7 90129395 90130874 + 0 NA promoter-TSS (ENSMUSG00000039361.11) protein_coding-promoter-TSS (ENSMUSG00000039361.11) -96 ENSMUSG00000039361.11 ENSMUSG00000039361 ENSMUST00000208127 Picalm protein_coding Interval_87444 chr19 51114639 51114944 + 0 NA Intergenic Intergenic -29958 ENSMUSG00000118338.1 ENSMUSG00000118338 ENSMUST00000235635 Gm50317 TEC Interval_173716 chrX 102660570 102660960 + 0 NA Intergenic Intergenic -2431 ENSMUSG00000083414.1 ENSMUSG00000083414 ENSMUST00000122135 Gm14840 processed_pseudogene Interval_98156 chr2 148850815 148851787 + 0 NA promoter-TSS (ENSMUSG00000027446.2) protein_coding-promoter-TSS (ENSMUSG00000027446.2) 13737 ENSMUSG00000027446.2 ENSMUSG00000027446 ENSMUST00000149457 Cstdc2 protein_coding Interval_40626 chr12 106094957 106095359 + 0 NA exon (ENSMUSG00000113390.1, exon 3 of 3) lincRNA-exon (ENSMUSG00000113390.1, exon 3 of 3) 3813 ENSMUSG00000113390.1 ENSMUSG00000113390 ENSMUST00000221493 Gm32635 lincRNA Interval_85325 chr19 24705388 24707411 + 0 NA intron (ENSMUSG00000041731.13, intron 5 of 5) protein_coding-intron (ENSMUSG00000041731.13, intron 10 of 10) -13029 ENSMUSG00000097950.1 ENSMUSG00000097950 ENSMUST00000182466 Gm17800 processed_pseudogene Interval_54613 chr14 71745689 71746395 + 0 NA Intergenic Intergenic 74509 ENSMUSG00000098064.1 ENSMUSG00000098064 ENSMUST00000183221 Gm9192 processed_pseudogene Interval_37778 chr12 71935199 71935662 + 0 NA intron (ENSMUSG00000034574.10, intron 3 of 25) protein_coding-intron (ENSMUSG00000034574.10, intron 3 of 25) -88139 ENSMUSG00000098224.1 ENSMUSG00000098224 ENSMUST00000183329 Gm7985 processed_pseudogene Interval_67438 chr16 48628624 48630644 + 0 NA TTS (ENSMUSG00000022652.7) protein_coding-TTS (ENSMUSG00000022652.7) 120814 ENSMUSG00000116640.1 ENSMUSG00000116640 ENSMUST00000231404 Gm8670 processed_pseudogene Interval_33722 chr11 118088953 118089198 + 0 NA exon (ENSMUSG00000033987.16, exon 4 of 5) protein_coding-exon (ENSMUSG00000033987.16, exon 4 of 5) 119 ENSMUSG00000033987.16 ENSMUSG00000033987 ENSMUST00000018719 Dnah17 protein_coding Interval_28216 chr11 74433041 74433335 + 0 NA intron (ENSMUSG00000038807.19, intron 9 of 25) protein_coding-intron (ENSMUSG00000038807.19, intron 9 of 25) 71119 ENSMUSG00000058275.3 ENSMUSG00000058275 ENSMUST00000077794 Olfr412 protein_coding Interval_65551 chr16 23261695 23262618 + 0 NA intron (ENSMUSG00000022885.16, intron 2 of 7) protein_coding-intron (ENSMUSG00000022885.16, intron 2 of 7) 36135 ENSMUSG00000022885.16 ENSMUSG00000022885 ENSMUST00000115335 St6gal1 protein_coding Interval_166157 chr9 57155584 57156051 + 0 NA promoter-TSS (ENSMUSG00000032299.10) protein_coding-promoter-TSS (ENSMUSG00000032299.10) 1317 ENSMUSG00000032299.10 ENSMUSG00000032299 ENSMUST00000214212 Commd4 protein_coding Interval_96729 chr2 127521237 127522508 + 0 NA promoter-TSS (ENSMUSG00000079056.12) protein_coding-promoter-TSS (ENSMUSG00000079056.12) 222 ENSMUSG00000079056.12 ENSMUSG00000079056 ENSMUST00000137625 Kcnip3 protein_coding Interval_114250 chr4 70068912 70069270 + 0 NA Intergenic Intergenic 21934 ENSMUSG00000082368.1 ENSMUSG00000082368 ENSMUST00000118903 Gm11225 processed_pseudogene Interval_77129 chr17 86760496 86760749 + 0 NA intron (ENSMUSG00000024140.10, intron 1 of 15) protein_coding-intron (ENSMUSG00000024140.10, intron 1 of 15) -12648 ENSMUSG00000117538.1 ENSMUSG00000117538 ENSMUST00000234482 Gm50008 TEC Interval_8170 chr1 136228103 136228408 + 0 NA promoter-TSS (ENSMUSG00000041605.16) protein_coding-promoter-TSS (ENSMUSG00000041605.16) 1764 ENSMUSG00000041605.16 ENSMUSG00000041605 ENSMUST00000195177 Inava protein_coding Interval_64812 chr16 16098354 16098686 + 0 NA intron (ENSMUSG00000041974.10, intron 5 of 16) protein_coding-intron (ENSMUSG00000041974.10, intron 5 of 19) -1078 ENSMUSG00000116385.1 ENSMUSG00000116385 ENSMUST00000230117 Gm18334 processed_pseudogene Interval_79955 chr18 36253070 36255807 + 0 NA Intergenic Intergenic -26659 ENSMUSG00000043991.5 ENSMUSG00000043991 ENSMUST00000051301 Pura protein_coding Interval_8613 chr1 143846286 143846604 + 0 NA Intergenic Intergenic 51770 ENSMUSG00000018189.12 ENSMUSG00000018189 ENSMUST00000185539 Uchl5 protein_coding Interval_18371 chr10 85360789 85361195 + 0 NA Intergenic Intergenic 27091 ENSMUSG00000087895.1 ENSMUSG00000087895 ENSMUST00000157270 Gm25281 miRNA Interval_143951 chr7 18433087 18433683 + 0 NA Intergenic Intergenic -1344 ENSMUSG00000030373.6 ENSMUSG00000030373 ENSMUST00000019291 Psg28 protein_coding Interval_91180 chr2 35696605 35697319 + 0 NA intron (ENSMUSG00000026883.17, intron 1 of 13) protein_coding-intron (ENSMUSG00000026883.17, intron 1 of 13) -13365 ENSMUSG00000026883.17 ENSMUSG00000026883 ENSMUST00000156669 Dab2ip protein_coding Interval_73264 chr17 35860614 35861846 + 0 NA promoter-TSS (ENSMUSG00000059791.14) protein_coding-promoter-TSS (ENSMUSG00000059791.14) -108 ENSMUSG00000059791.14 ENSMUSG00000059791 ENSMUST00000172931 Nrm protein_coding Interval_142716 chr6 145120166 145122272 + 0 NA promoter-TSS (ENSMUSG00000030263.13) protein_coding-promoter-TSS (ENSMUSG00000030263.13) 24178 ENSMUSG00000107420.1 ENSMUSG00000107420 ENSMUST00000204561 Gm43910 TEC Interval_88131 chr19 59457873 59460026 + 0 NA promoter-TSS (ENSMUSG00000087095.2) antisense-promoter-TSS (ENSMUSG00000087095.2) -314 ENSMUSG00000087095.2 ENSMUSG00000087095 ENSMUST00000136990 Emx2os antisense Interval_76720 chr17 83686972 83687377 + 0 NA Intergenic Intergenic -41990 ENSMUSG00000055817.18 ENSMUSG00000055817 ENSMUST00000175920 Mta3 protein_coding Interval_30312 chr11 93497151 93497817 + 0 NA intron (ENSMUSG00000056158.14, intron 4 of 8) protein_coding-intron (ENSMUSG00000056158.14, intron 5 of 9) -84160 ENSMUSG00000064743.1 ENSMUSG00000064743 ENSMUST00000082809 Gm24856 snRNA Interval_152981 chr7 140234314 140235604 + 0 NA Intergenic Intergenic 16692 ENSMUSG00000025461.11 ENSMUSG00000025461 ENSMUST00000209840 Cd163l1 protein_coding Interval_130433 chr5 127592208 127593115 + 0 NA Intergenic Intergenic 11946 ENSMUSG00000029416.17 ENSMUSG00000029416 ENSMUST00000182841 Slc15a4 protein_coding Interval_48126 chr13 96436013 96436588 + 0 NA promoter-TSS (ENSMUSG00000047117.13) protein_coding-promoter-TSS (ENSMUSG00000047117.13) 31797 ENSMUSG00000021671.9 ENSMUSG00000021671 ENSMUST00000222792 Poc5 protein_coding Interval_132359 chr5 144452436 144453540 + 0 NA Intergenic Intergenic 46386 ENSMUSG00000083574.1 ENSMUSG00000083574 ENSMUST00000118354 Gm15709 processed_pseudogene Interval_42562 chr13 15480231 15480453 + 0 NA intron (ENSMUSG00000021318.15, intron 2 of 9) protein_coding-intron (ENSMUSG00000021318.15, intron 2 of 14) -16606 ENSMUSG00000097806.3 ENSMUSG00000097806 ENSMUST00000193256 Gm6556 processed_transcript Interval_101037 chr2 174424064 174424325 + 0 NA promoter-TSS (ENSMUSG00000016253.12) protein_coding-promoter-TSS (ENSMUSG00000016253.12) 802 ENSMUSG00000016253.12 ENSMUSG00000016253 ENSMUST00000137986 Nelfcd protein_coding Interval_126987 chr5 99201982 99203257 + 0 NA Intergenic Intergenic -31198 ENSMUSG00000105579.2 ENSMUSG00000105579 ENSMUST00000198339 Gm43251 lincRNA Interval_16714 chr10 67158691 67158888 + 0 NA TTS (ENSMUSG00000037876.17) protein_coding-TTS (ENSMUSG00000037876.17) -26959 ENSMUSG00000037876.17 ENSMUSG00000037876 ENSMUST00000173236 Jmjd1c protein_coding Interval_114003 chr4 62383866 62384073 + 0 NA exon (ENSMUSG00000066149.11, exon 5 of 5) protein_coding-exon (ENSMUSG00000066149.11, exon 5 of 5) -1532 ENSMUSG00000066150.12 ENSMUSG00000066150 ENSMUST00000122092 Slc31a1 protein_coding Interval_25364 chr11 46694279 46694539 + 0 NA intron (ENSMUSG00000040413.15, intron 1 of 8) protein_coding-intron (ENSMUSG00000040413.15, intron 1 of 8) -4052 ENSMUSG00000040413.15 ENSMUSG00000040413 ENSMUST00000125008 Timd2 protein_coding Interval_112787 chr4 44994554 44995581 + 0 NA exon (ENSMUSG00000049657.9, exon 2 of 2) protein_coding-exon (ENSMUSG00000049657.9, exon 2 of 2) 13606 ENSMUSG00000035637.14 ENSMUSG00000035637 ENSMUST00000143589 Grhpr protein_coding Interval_69132 chr16 90848744 90849840 + 0 NA intron (ENSMUSG00000039903.18, intron 1 of 4) protein_coding-intron (ENSMUSG00000039903.18, intron 1 of 7) 1671 ENSMUSG00000116543.1 ENSMUSG00000116543 ENSMUST00000232254 Gm36363 antisense Interval_83941 chr19 5729144 5729900 + 0 NA TTS (ENSMUSG00000079478.9) protein_coding-TTS (ENSMUSG00000079478.9) 131 ENSMUSG00000024939.6 ENSMUSG00000024939 ENSMUST00000161368 Fam89b protein_coding Interval_24094 chr11 30189675 30190249 + 0 NA intron (ENSMUSG00000020315.18, intron 2 of 30) protein_coding-intron (ENSMUSG00000020315.18, intron 2 of 35) -77502 ENSMUSG00000073073.4 ENSMUSG00000073073 ENSMUST00000146985 Gm8098 processed_transcript Interval_30990 chr11 97611094 97611968 + 0 NA intron (ENSMUSG00000085860.1, intron 1 of 3) processed_transcript-intron (ENSMUSG00000085860.1, intron 1 of 3) -3451 ENSMUSG00000085860.1 ENSMUSG00000085860 ENSMUST00000145262 2410003L11Rik processed_transcript Interval_82866 chr18 77597486 77597723 + 0 NA Intergenic Intergenic 84164 ENSMUSG00000117855.1 ENSMUSG00000117855 ENSMUST00000236419 Gm50197 processed_pseudogene Interval_91100 chr2 35044913 35045602 + 0 NA intron (ENSMUSG00000026874.10, intron 5 of 40) protein_coding-intron (ENSMUSG00000026874.10, intron 5 of 40) -25612 ENSMUSG00000026874.10 ENSMUSG00000026874 ENSMUST00000151628 Hc protein_coding Interval_100359 chr2 168628677 168629224 + 0 NA Intergenic Intergenic 11809 ENSMUSG00000105496.1 ENSMUSG00000105496 ENSMUST00000200215 Mir7004 miRNA Interval_93180 chr2 70918183 70919156 + 0 NA Intergenic Intergenic 40840 ENSMUSG00000085868.1 ENSMUSG00000085868 ENSMUST00000150119 Gm13632 lincRNA Interval_144079 chr7 19335327 19336216 + 0 NA intron (ENSMUSG00000109366.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000109366.1, intron 1 of 2) 2642 ENSMUSG00000109366.1 ENSMUSG00000109366 ENSMUST00000207382 Gm44698 lincRNA Interval_23462 chr11 22765047 22765254 + 0 NA intron (ENSMUSG00000051650.11, intron 5 of 5) protein_coding-intron (ENSMUSG00000051650.11, intron 5 of 5) -5125 ENSMUSG00000084081.3 ENSMUSG00000084081 ENSMUST00000117244 Gm12057 processed_pseudogene Interval_83456 chr18 85762656 85764329 + 0 NA Intergenic Intergenic -46767 ENSMUSG00000117854.1 ENSMUSG00000117854 ENSMUST00000237113 Gm7612 processed_pseudogene Interval_59736 chr15 58969233 58969526 + 0 NA intron (ENSMUSG00000022353.10, intron 3 of 7) protein_coding-intron (ENSMUSG00000022353.10, intron 5 of 14) -14757 ENSMUSG00000115062.1 ENSMUSG00000115062 ENSMUST00000226216 4930544F09Rik antisense Interval_20304 chr10 116755006 116755369 + 0 NA Intergenic Intergenic 25934 ENSMUSG00000112924.1 ENSMUSG00000112924 ENSMUST00000218193 4930579P08Rik lincRNA Interval_38415 chr12 78871182 78872094 + 0 NA intron (ENSMUSG00000021116.10, intron 2 of 7) protein_coding-intron (ENSMUSG00000021116.10, intron 2 of 7) 9508 ENSMUSG00000021116.10 ENSMUSG00000021116 ENSMUST00000220382 Eif2s1 protein_coding Interval_103026 chr3 34605367 34605565 + 0 NA intron (ENSMUSG00000105265.4, intron 1 of 2) processed_transcript-intron (ENSMUSG00000105265.4, intron 3 of 4) -3218 ENSMUSG00000105222.1 ENSMUSG00000105222 ENSMUST00000199244 Gm42205 lincRNA Interval_160899 chr8 114787760 114788317 + 0 NA intron (ENSMUSG00000004637.15, intron 8 of 8) protein_coding-intron (ENSMUSG00000004637.15, intron 8 of 8) 75871 ENSMUSG00000004637.15 ENSMUSG00000004637 ENSMUST00000162052 Wwox protein_coding Interval_143630 chr7 13359333 13359733 + 0 NA TTS (ENSMUSG00000033847.15) protein_coding-TTS (ENSMUSG00000033847.15) -1578 ENSMUSG00000108293.1 ENSMUSG00000108293 ENSMUST00000204668 Pla2g4c-ps unprocessed_pseudogene Interval_107572 chr3 108553815 108555268 + 0 NA promoter-TSS (ENSMUSG00000105810.1) TEC-promoter-TSS (ENSMUSG00000105810.1) 210 ENSMUSG00000088185.1 ENSMUSG00000088185 ENSMUST00000157560 Scarna2 scaRNA Interval_14950 chr10 41415102 41415964 + 0 NA intron (ENSMUSG00000091415.5, intron 31 of 39) protein_coding-intron (ENSMUSG00000091415.5, intron 31 of 39) -7256 ENSMUSG00000098818.1 ENSMUSG00000098818 ENSMUST00000183534 Gm27783 rRNA Interval_13852 chr10 23902119 23902361 + 0 NA intron (ENSMUSG00000037440.8, intron 5 of 6) protein_coding-intron (ENSMUSG00000037440.8, intron 5 of 6) 7386 ENSMUSG00000037440.8 ENSMUSG00000037440 ENSMUST00000219254 Vnn1 protein_coding Interval_99898 chr2 165693396 165693578 + 0 NA intron (ENSMUSG00000017897.18, intron 6 of 7) protein_coding-intron (ENSMUSG00000017897.18, intron 5 of 15) -26630 ENSMUSG00000081758.1 ENSMUSG00000081758 ENSMUST00000118200 Gm11460 processed_pseudogene Interval_24189 chr11 31127095 31127431 + 0 NA Intergenic Intergenic 7260 ENSMUSG00000082049.1 ENSMUSG00000082049 ENSMUST00000120846 Gm12105 processed_pseudogene Interval_105482 chr3 86923673 86924301 + 0 NA Intergenic Intergenic -3652 ENSMUSG00000028078.14 ENSMUSG00000028078 ENSMUST00000194452 Dclk2 protein_coding Interval_125799 chr5 74240132 74240303 + 0 NA intron (ENSMUSG00000062110.14, intron 5 of 7) protein_coding-intron (ENSMUSG00000062110.14, intron 5 of 8) 9399 ENSMUSG00000107209.1 ENSMUSG00000107209 ENSMUST00000201308 Gm42599 TEC Interval_104212 chr3 60611925 60612358 + 0 NA intron (ENSMUSG00000027763.13, intron 2 of 6) protein_coding-intron (ENSMUSG00000027763.13, intron 4 of 9) 7757 ENSMUSG00000104125.1 ENSMUSG00000104125 ENSMUST00000195434 Gm37488 TEC Interval_161677 chr8 121959547 121959984 + 0 NA intron (ENSMUSG00000025316.16, intron 1 of 4) protein_coding-intron (ENSMUSG00000025316.16, intron 1 of 12) -9120 ENSMUSG00000098184.1 ENSMUSG00000098184 ENSMUST00000182352 Gm27011 bidirectional_promoter_lncRNA Interval_169149 chr9 94577620 94578602 + 0 NA Intergenic Intergenic -14085 ENSMUSG00000111019.1 ENSMUSG00000111019 ENSMUST00000216350 Gm39404 processed_pseudogene Interval_20566 chr10 119100463 119100747 + 0 NA intron (ENSMUSG00000100681.1, intron 3 of 3) lincRNA-intron (ENSMUSG00000100681.1, intron 3 of 3) 7700 ENSMUSG00000100681.1 ENSMUSG00000100681 ENSMUST00000187551 1700064J06Rik lincRNA Interval_139002 chr6 94155866 94156265 + 0 NA intron (ENSMUSG00000045095.16, intron 2 of 2) protein_coding-intron (ENSMUSG00000045095.16, intron 1 of 21) 167969 ENSMUSG00000107545.1 ENSMUSG00000107545 ENSMUST00000204466 Gm44307 processed_pseudogene Interval_68829 chr16 87432010 87432818 + 0 NA TTS (ENSMUSG00000041079.12) protein_coding-TTS (ENSMUSG00000041079.12) 149 ENSMUSG00000052299.9 ENSMUSG00000052299 ENSMUST00000232095 Ltn1 protein_coding Interval_62518 chr15 94139321 94139958 + 0 NA Intergenic Intergenic -174931 ENSMUSG00000115965.1 ENSMUSG00000115965 ENSMUST00000229885 Gm30564 lincRNA Interval_123609 chr5 33769310 33769919 + 0 NA TTS (ENSMUSG00000005299.6) protein_coding-TTS (ENSMUSG00000005299.6) -5298 ENSMUSG00000107149.1 ENSMUSG00000107149 ENSMUST00000202183 Gm30708 processed_pseudogene Interval_111437 chr4 21649636 21651338 + 0 NA Intergenic Intergenic -20553 ENSMUSG00000082672.1 ENSMUSG00000082672 ENSMUST00000120002 Gm11876 processed_pseudogene Interval_155319 chr8 31214847 31215431 + 0 NA exon (ENSMUSG00000083588.1, exon 1 of 1) processed_pseudogene-exon (ENSMUSG00000083588.1, exon 1 of 1) 212 ENSMUSG00000083588.1 ENSMUSG00000083588 ENSMUST00000120464 Gm8051 processed_pseudogene Interval_79980 chr18 36411189 36411894 + 0 NA intron (ENSMUSG00000024346.6, intron 2 of 2) protein_coding-intron (ENSMUSG00000024346.6, intron 3 of 3) 42983 ENSMUSG00000024346.6 ENSMUSG00000024346 ENSMUST00000237499 Pfdn1 protein_coding Interval_79488 chr18 32281449 32281925 + 0 NA Intergenic Intergenic -11663 ENSMUSG00000089529.1 ENSMUSG00000089529 ENSMUST00000158904 Gm22325 misc_RNA Interval_57485 chr15 11692716 11694040 + 0 NA Intergenic Intergenic 10325 ENSMUSG00000115585.1 ENSMUSG00000115585 ENSMUST00000228108 Gm41271 processed_transcript Interval_67508 chr16 50028633 50028899 + 0 NA Intergenic Intergenic -82307 ENSMUSG00000098028.1 ENSMUSG00000098028 ENSMUST00000182962 Gm8824 processed_pseudogene Interval_82499 chr18 74670764 74671118 + 0 NA intron (ENSMUSG00000025885.18, intron 14 of 39) protein_coding-intron (ENSMUSG00000025885.18, intron 14 of 38) -42678 ENSMUSG00000025885.18 ENSMUSG00000025885 ENSMUST00000154986 Myo5b protein_coding Interval_14856 chr10 40540752 40541381 + 0 NA Intergenic Intergenic -7826 ENSMUSG00000111251.1 ENSMUSG00000111251 ENSMUST00000214826 Gm18671 processed_pseudogene Interval_95323 chr2 106526772 106527432 + 0 NA Intergenic Intergenic -3999 ENSMUSG00000087226.1 ENSMUSG00000087226 ENSMUST00000130634 Gm14015 lincRNA Interval_154418 chr8 16006423 16006846 + 0 NA intron (ENSMUSG00000060924.15, intron 42 of 69) protein_coding-intron (ENSMUSG00000060924.15, intron 42 of 69) 128970 ENSMUSG00000109757.1 ENSMUSG00000109757 ENSMUST00000211639 Gm7128 processed_pseudogene Interval_164294 chr9 35061300 35062227 + 0 NA intron (ENSMUSG00000032038.7, intron 2 of 6) protein_coding-intron (ENSMUSG00000032038.7, intron 1 of 10) 10868 ENSMUSG00000032038.7 ENSMUSG00000032038 ENSMUST00000215463 St3gal4 protein_coding Interval_122788 chr5 25514709 25515017 + 0 NA Intergenic Intergenic -1204 ENSMUSG00000038044.8 ENSMUSG00000038044 ENSMUST00000045016 Cct8l1 protein_coding Interval_42524 chr13 14521795 14523228 + 0 NA promoter-TSS (ENSMUSG00000021301.9) antisense-intron (ENSMUSG00000113654.1, intron 1 of 1) -5 ENSMUSG00000113654.1 ENSMUSG00000113654 ENSMUST00000222432 Gm30893 antisense Interval_172734 chrX 48062624 48064890 + 0 NA Intergenic Intergenic -28904 ENSMUSG00000037010.7 ENSMUSG00000037010 ENSMUST00000039026 Apln protein_coding Interval_135200 chr6 37451706 37451966 + 0 NA Intergenic Intergenic -87845 ENSMUSG00000038641.12 ENSMUSG00000038641 ENSMUST00000123648 Akr1d1 protein_coding Interval_24284 chr11 32104184 32105057 + 0 NA Intergenic Intergenic -3392 ENSMUSG00000086386.1 ENSMUSG00000086386 ENSMUST00000145338 Gm12108 lincRNA Interval_92549 chr2 60515084 60516062 + 0 NA intron (ENSMUSG00000054580.14, intron 5 of 12) protein_coding-intron (ENSMUSG00000054580.14, intron 5 of 29) -35186 ENSMUSG00000086578.2 ENSMUSG00000086578 ENSMUST00000126361 Gm13583 antisense Interval_69079 chr16 90496659 90498482 + 0 NA exon (ENSMUSG00000053414.8, exon 11 of 11) protein_coding-exon (ENSMUSG00000053414.8, exon 11 of 11) 53039 ENSMUSG00000116753.1 ENSMUSG00000116753 ENSMUST00000232652 Gm36001 lincRNA Interval_130427 chr5 127535541 127535872 + 0 NA intron (ENSMUSG00000034324.16, intron 4 of 8) protein_coding-intron (ENSMUSG00000034324.16, intron 4 of 8) -17548 ENSMUSG00000034324.16 ENSMUSG00000034324 ENSMUST00000145748 Tmem132c protein_coding Interval_102737 chr3 30695243 30696631 + 0 NA intron (ENSMUSG00000074653.10, intron 1 of 8) protein_coding-intron (ENSMUSG00000074653.10, intron 1 of 6) 3831 ENSMUSG00000074653.10 ENSMUSG00000074653 ENSMUST00000130731 Lrrc31 protein_coding Interval_110065 chr3 152929015 152930260 + 0 NA intron (ENSMUSG00000039047.17, intron 14 of 14) protein_coding-intron (ENSMUSG00000039037.5, intron 2 of 4) 9397 ENSMUSG00000090017.1 ENSMUSG00000090017 ENSMUST00000160076 Gm16213 antisense Interval_20484 chr10 117876589 117877129 + 0 NA Intergenic Intergenic -10144 ENSMUSG00000112711.1 ENSMUSG00000112711 ENSMUST00000217849 Gm32552 lincRNA Interval_42408 chr13 13334145 13334668 + 0 NA intron (ENSMUSG00000110123.1, intron 3 of 9) unprocessed_pseudogene-intron (ENSMUSG00000110123.1, intron 3 of 9) 4922 ENSMUSG00000084734.1 ENSMUSG00000084734 ENSMUST00000122785 Gm25804 snoRNA Interval_102426 chr3 25413935 25414123 + 0 NA Intergenic Intergenic -131991 ENSMUSG00000087945.1 ENSMUSG00000087945 ENSMUST00000157320 Gm24250 rRNA Interval_107232 chr3 104788487 104790543 + 0 NA intron (ENSMUSG00000002233.13, intron 1 of 3) protein_coding-intron (ENSMUSG00000002233.13, intron 1 of 4) 287 ENSMUSG00000002233.13 ENSMUSG00000002233 ENSMUST00000132721 Rhoc protein_coding Interval_53763 chr14 61575733 61576231 + 0 NA Intergenic Intergenic 17184 ENSMUSG00000114902.1 ENSMUSG00000114902 ENSMUST00000225750 Gm4118 processed_pseudogene Interval_147244 chr7 65041314 65041574 + 0 NA intron (ENSMUSG00000030518.17, intron 1 of 3) protein_coding-intron (ENSMUSG00000030518.17, intron 1 of 9) -84868 ENSMUSG00000093212.1 ENSMUSG00000093212 ENSMUST00000175471 Gm25249 miRNA Interval_153172 chr7 142047500 142048143 + 0 NA intron (ENSMUSG00000025147.7, intron 1 of 5) protein_coding-intron (ENSMUSG00000025147.7, intron 1 of 4) 5254 ENSMUSG00000109638.1 ENSMUSG00000109638 ENSMUST00000210243 Gm45630 TEC Interval_77088 chr17 86444605 86445410 + 0 NA intron (ENSMUSG00000045038.14, intron 2 of 14) protein_coding-intron (ENSMUSG00000045038.14, intron 3 of 15) -45555 ENSMUSG00000045038.14 ENSMUSG00000045038 ENSMUST00000136986 Prkce protein_coding Interval_2783 chr1 44891388 44892634 + 0 NA Intergenic Intergenic -17859 ENSMUSG00000100013.1 ENSMUSG00000100013 ENSMUST00000185547 Gm19480 processed_pseudogene Interval_105674 chr3 88509393 88510581 + 0 NA promoter-TSS (ENSMUSG00000028063.15) protein_coding-promoter-TSS (ENSMUSG00000028063.15) 17368 ENSMUSG00000103115.1 ENSMUSG00000103115 ENSMUST00000193595 Gm37584 lincRNA Interval_109761 chr3 146692938 146693985 + 0 NA Intergenic Intergenic -2758 ENSMUSG00000105529.1 ENSMUSG00000105529 ENSMUST00000198038 Gm9480 processed_pseudogene Interval_54831 chr14 75669244 75669516 + 0 NA intron (ENSMUSG00000022002.2, intron 5 of 13) protein_coding-intron (ENSMUSG00000022002.2, intron 5 of 13) -17851 ENSMUSG00000064394.1 ENSMUSG00000064394 ENSMUST00000082460 Gm23622 snRNA Interval_38938 chr12 83972147 83972549 + 0 NA intron (ENSMUSG00000090843.2, intron 6 of 14) protein_coding-intron (ENSMUSG00000090843.2, intron 6 of 14) 12504 ENSMUSG00000090843.2 ENSMUSG00000090843 ENSMUST00000164935 Heatr4 protein_coding Interval_26417 chr11 57746971 57748148 + 0 NA intron (ENSMUSG00000020520.14, intron 4 of 11) protein_coding-intron (ENSMUSG00000020520.14, intron 4 of 11) 6259 ENSMUSG00000077155.1 ENSMUSG00000077155 ENSMUST00000103967 Gm24582 snRNA Interval_98480 chr2 152699973 152700748 + 0 NA intron (ENSMUSG00000019188.16, intron 11 of 11) protein_coding-intron (ENSMUSG00000019188.16, intron 10 of 10) 13325 ENSMUSG00000042814.8 ENSMUSG00000042814 ENSMUST00000062148 Mcts2 protein_coding Interval_73128 chr17 34970349 34970584 + 0 NA exon (ENSMUSG00000091971.3, exon 1 of 1) protein_coding-exon (ENSMUSG00000091971.3, exon 1 of 1) 554 ENSMUSG00000092609.1 ENSMUSG00000092609 ENSMUST00000173680 Gm20481 protein_coding Interval_95178 chr2 104571194 104571391 + 0 NA exon (ENSMUSG00000086454.7, exon 4 of 4) processed_transcript-exon (ENSMUSG00000086454.7, exon 4 of 4) 4095 ENSMUSG00000086454.7 ENSMUSG00000086454 ENSMUST00000150581 Platr14 processed_transcript Interval_83698 chr19 3797530 3797906 + 0 NA TTS (ENSMUSG00000082848.1) antisense-TTS (ENSMUSG00000082848.1) 24671 ENSMUSG00000117779.1 ENSMUSG00000117779 ENSMUST00000236552 Gm19209 processed_pseudogene Interval_90027 chr2 27390704 27390927 + 0 NA intron (ENSMUSG00000009621.18, intron 1 of 27) protein_coding-intron (ENSMUSG00000009621.18, intron 1 of 27) -11037 ENSMUSG00000076364.1 ENSMUSG00000076364 ENSMUST00000102409 Gm24049 miRNA Interval_59935 chr15 62086897 62088016 + 0 NA intron (ENSMUSG00000097039.8, intron 1 of 6) lincRNA-intron (ENSMUSG00000097039.8, intron 1 of 8) 7211 ENSMUSG00000098308.1 ENSMUSG00000098308 ENSMUST00000185059 Gm27782 misc_RNA Interval_133055 chr5 149552677 149555363 + 0 NA intron (ENSMUSG00000029658.17, intron 4 of 19) protein_coding-intron (ENSMUSG00000029658.17, intron 4 of 22) -15990 ENSMUSG00000107132.1 ENSMUSG00000107132 ENSMUST00000202188 Gm15997 antisense Interval_26245 chr11 55409889 55410966 + 0 NA intron (ENSMUSG00000018593.13, intron 1 of 9) protein_coding-intron (ENSMUSG00000018593.13, intron 1 of 9) 9898 ENSMUSG00000018593.13 ENSMUSG00000018593 ENSMUST00000125787 Sparc protein_coding Interval_166640 chr9 61484045 61484835 + 0 NA Intergenic Intergenic -11454 ENSMUSG00000111635.1 ENSMUSG00000111635 ENSMUST00000217096 Gm47240 processed_pseudogene Interval_169154 chr9 94668561 94668808 + 0 NA intron (ENSMUSG00000101595.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000101595.1, intron 1 of 1) 134 ENSMUSG00000101595.1 ENSMUSG00000101595 ENSMUST00000188551 Gm29395 lincRNA Interval_141684 chr6 133362932 133363990 + 0 NA Intergenic Intergenic 17558 ENSMUSG00000107527.1 ENSMUSG00000107527 ENSMUST00000204228 Gm44239 unprocessed_pseudogene Interval_174672 chrX 162800081 162800895 + 0 NA intron (ENSMUSG00000038344.14, intron 2 of 7) protein_coding-intron (ENSMUSG00000038344.14, intron 3 of 9) 25910 ENSMUSG00000031353.13 ENSMUSG00000031353 ENSMUST00000143681 Rbbp7 protein_coding Interval_47587 chr13 89606975 89608138 + 0 NA intron (ENSMUSG00000021613.9, intron 4 of 4) protein_coding-intron (ENSMUSG00000021613.9, intron 4 of 4) 23045 ENSMUSG00000021613.9 ENSMUSG00000021613 ENSMUST00000225678 Hapln1 protein_coding Interval_133397 chr6 4658867 4659649 + 0 NA Intergenic Intergenic 28131 ENSMUSG00000015189.12 ENSMUSG00000015189 ENSMUST00000204372 Casd1 protein_coding Interval_35402 chr12 21362186 21363623 + 0 NA intron (ENSMUSG00000052593.16, intron 1 of 3) protein_coding-intron (ENSMUSG00000052593.16, intron 1 of 18) 8550 ENSMUSG00000088997.1 ENSMUSG00000088997 ENSMUST00000158372 Gm22766 snRNA Interval_151318 chr7 120948443 120949470 + 0 NA Intergenic Intergenic 14126 ENSMUSG00000030880.14 ENSMUSG00000030880 ENSMUST00000209014 Polr3e protein_coding Interval_24846 chr11 40257074 40257631 + 0 NA intron (ENSMUSG00000085301.1, intron 5 of 7) lincRNA-intron (ENSMUSG00000085301.1, intron 5 of 7) 166002 ENSMUSG00000082295.1 ENSMUSG00000082295 ENSMUST00000121775 Gm12133 processed_pseudogene Interval_71756 chr17 25885494 25886621 + 0 NA intron (ENSMUSG00000025730.14, intron 4 of 6) protein_coding-intron (ENSMUSG00000025730.14, intron 4 of 6) -5199 ENSMUSG00000071192.6 ENSMUSG00000071192 ENSMUST00000095487 Wfikkn1 protein_coding Interval_53658 chr14 60688900 60689254 + 0 NA intron (ENSMUSG00000021990.16, intron 2 of 2) protein_coding-intron (ENSMUSG00000021990.16, intron 1 of 12) -43829 ENSMUSG00000021990.16 ENSMUSG00000021990 ENSMUST00000162939 Spata13 protein_coding Interval_12276 chr1 191333913 191334431 + 0 NA intron (ENSMUSG00000026627.7, intron 2 of 7) protein_coding-intron (ENSMUSG00000026627.7, intron 2 of 7) 8260 ENSMUSG00000026627.7 ENSMUSG00000026627 ENSMUST00000027940 Pacc1 protein_coding Interval_101078 chr2 177183298 177183600 + 0 NA TTS (ENSMUSG00000078870.9) protein_coding-TTS (ENSMUSG00000078870.9) -10579 ENSMUSG00000081590.1 ENSMUSG00000081590 ENSMUST00000122158 Gm14413 unprocessed_pseudogene Interval_65912 chr16 30203775 30204649 + 0 NA intron (ENSMUSG00000097621.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000097621.1, intron 1 of 1) 1667 ENSMUSG00000097621.1 ENSMUSG00000097621 ENSMUST00000181113 Gm26562 lincRNA Interval_95460 chr2 109802217 109803069 + 0 NA Intergenic Intergenic -10109 ENSMUSG00000083915.1 ENSMUSG00000083915 ENSMUST00000120873 Gm13932 processed_pseudogene Interval_119013 chr4 135012597 135014173 + 0 NA Intergenic Intergenic 82483 ENSMUSG00000028821.8 ENSMUSG00000028821 ENSMUST00000144037 Syf2 protein_coding Interval_11239 chr1 180384300 180385099 + 0 NA intron (ENSMUSG00000038855.10, intron 2 of 7) protein_coding-intron (ENSMUSG00000038855.10, intron 2 of 7) 8255 ENSMUSG00000103772.1 ENSMUSG00000103772 ENSMUST00000194945 Gm36933 TEC Interval_91399 chr2 38547939 38548142 + 0 NA intron (ENSMUSG00000026749.11, intron 2 of 3) protein_coding-intron (ENSMUSG00000026749.11, intron 1 of 9) -12333 ENSMUSG00000108210.1 ENSMUSG00000108210 ENSMUST00000204769 Gm35808 TEC Interval_75871 chr17 72305739 72306250 + 0 NA intron (ENSMUSG00000055471.7, intron 3 of 4) protein_coding-intron (ENSMUSG00000055471.7, intron 3 of 28) 49736 ENSMUSG00000117046.1 ENSMUSG00000117046 ENSMUST00000233853 Gm19183 processed_pseudogene Interval_10212 chr1 167230355 167232425 + 0 NA intron (ENSMUSG00000026558.13, intron 3 of 5) protein_coding-intron (ENSMUSG00000026558.13, intron 4 of 6) 5445 ENSMUSG00000026558.13 ENSMUSG00000026558 ENSMUST00000193579 Uck2 protein_coding Interval_65201 chr16 20484980 20485705 + 0 NA Intergenic Intergenic -3446 ENSMUSG00000093381.1 ENSMUSG00000093381 ENSMUST00000177503 Gm20615 unprocessed_pseudogene Interval_25205 chr11 45338165 45338878 + 0 NA Intergenic Intergenic -42131 ENSMUSG00000104099.1 ENSMUSG00000104099 ENSMUST00000195753 Gm37312 TEC Interval_119706 chr4 139351915 139353004 + 0 NA promoter-TSS (ENSMUSG00000028741.13) protein_coding-promoter-TSS (ENSMUSG00000028741.13) -128 ENSMUSG00000078517.12 ENSMUSG00000078517 ENSMUST00000155700 Emc1 protein_coding Interval_163136 chr9 15572637 15573291 + 0 NA intron (ENSMUSG00000039977.16, intron 10 of 11) protein_coding-intron (ENSMUSG00000039977.16, intron 12 of 13) -46893 ENSMUSG00000111299.1 ENSMUSG00000111299 ENSMUST00000216952 4930540M03Rik antisense Interval_145401 chr7 34484964 34485356 + 0 NA intron (ENSMUSG00000085124.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000085124.1, intron 1 of 2) 10905 ENSMUSG00000081863.1 ENSMUSG00000081863 ENSMUST00000122458 Gm12780 processed_pseudogene Interval_53379 chr14 56777127 56779108 + 0 NA promoter-TSS (ENSMUSG00000021938.12) protein_coding-promoter-TSS (ENSMUSG00000021938.12) -190 ENSMUSG00000021938.12 ENSMUSG00000021938 ENSMUST00000168575 Pspc1 protein_coding Interval_103677 chr3 51559704 51561631 + 0 NA exon (ENSMUSG00000037111.9, exon 1 of 8) protein_coding-exon (ENSMUSG00000037111.9, exon 1 of 8) -1015 ENSMUSG00000102466.1 ENSMUSG00000102466 ENSMUST00000192083 Gm38200 TEC Interval_50839 chr14 20148469 20148947 + 0 NA intron (ENSMUSG00000023243.9, intron 1 of 4) protein_coding-intron (ENSMUSG00000023243.9, intron 1 of 4) -3414 ENSMUSG00000023243.9 ENSMUSG00000023243 ENSMUST00000225552 Kcnk5 protein_coding Interval_29773 chr11 86698508 86699324 + 0 NA intron (ENSMUSG00000047126.17, intron 30 of 31) protein_coding-intron (ENSMUSG00000047126.17, intron 30 of 31) 14931 ENSMUSG00000072582.9 ENSMUSG00000072582 ENSMUST00000108021 Ptrh2 protein_coding Interval_151719 chr7 126244244 126244641 + 0 NA intron (ENSMUSG00000108676.1, intron 1 of 4) lincRNA-intron (ENSMUSG00000108676.1, intron 1 of 4) -1815 ENSMUSG00000108309.1 ENSMUSG00000108309 ENSMUST00000205724 Gm44703 processed_pseudogene Interval_168401 chr9 80052693 80053211 + 0 NA Intergenic Intergenic -8736 ENSMUSG00000111574.1 ENSMUSG00000111574 ENSMUST00000217483 Gm46146 processed_pseudogene Interval_16234 chr10 61594291 61595466 + 0 NA promoter-TSS (ENSMUSG00000020090.7) protein_coding-promoter-TSS (ENSMUSG00000020090.7) -614 ENSMUSG00000020090.7 ENSMUSG00000020090 ENSMUST00000020287 Npffr1 protein_coding Interval_145986 chr7 42857305 42858378 + 0 NA intron (ENSMUSG00000092225.1, intron 1 of 3) protein_coding-intron (ENSMUSG00000092225.1, intron 1 of 3) 9393 ENSMUSG00000092225.1 ENSMUSG00000092225 ENSMUST00000174558 Gm2381 protein_coding Interval_45797 chr13 58148344 58149321 + 0 NA promoter-TSS (ENSMUSG00000097717.2) processed_transcript-promoter-TSS (ENSMUSG00000097717.2) 288 ENSMUSG00000097717.2 ENSMUSG00000097717 ENSMUST00000181908 1700066J03Rik processed_transcript Interval_168202 chr9 77941172 77942831 + 0 NA intron (ENSMUSG00000032349.13, intron 1 of 2) protein_coding-intron (ENSMUSG00000032349.13, intron 1 of 7) 24567 ENSMUSG00000032349.13 ENSMUSG00000032349 ENSMUST00000134072 Elovl5 protein_coding Interval_168289 chr9 78442072 78443546 + 0 NA promoter-TSS (ENSMUSG00000032344.17) protein_coding-promoter-TSS (ENSMUSG00000032344.17) 76 ENSMUSG00000032344.17 ENSMUSG00000032344 ENSMUST00000127190 Cgas protein_coding Interval_30413 chr11 94225364 94226466 + 0 NA Intergenic Intergenic 14461 ENSMUSG00000037573.5 ENSMUSG00000037573 ENSMUST00000041589 Tob1 protein_coding Interval_102901 chr3 32658568 32661429 + 0 NA Intergenic Intergenic -43519 ENSMUSG00000027669.14 ENSMUSG00000027669 ENSMUST00000143588 Gnb4 protein_coding Interval_168728 chr9 86464524 86465177 + 0 NA promoter-TSS (ENSMUSG00000032415.14) protein_coding-promoter-TSS (ENSMUSG00000032415.14) 100 ENSMUSG00000032415.14 ENSMUSG00000032415 ENSMUST00000121189 Ube2cbp protein_coding Interval_81896 chr18 65679251 65680360 + 0 NA intron (ENSMUSG00000042439.13, intron 4 of 6) protein_coding-intron (ENSMUSG00000042439.13, intron 3 of 5) -18479 ENSMUSG00000046610.15 ENSMUSG00000046610 ENSMUST00000134343 Oacyl protein_coding Interval_106370 chr3 95687297 95688274 + 0 NA promoter-TSS (ENSMUSG00000015850.11) protein_coding-promoter-TSS (ENSMUSG00000015850.11) -10634 ENSMUSG00000015850.11 ENSMUSG00000015850 ENSMUST00000148854 Adamtsl4 protein_coding Interval_99623 chr2 163642611 163644445 + 0 NA intron (ENSMUSG00000017707.9, intron 1 of 3) protein_coding-intron (ENSMUSG00000017707.9, intron 1 of 9) -1322 ENSMUSG00000058812.2 ENSMUSG00000058812 ENSMUST00000184724 0610039K10Rik antisense Interval_135933 chr6 48866182 48867681 + 0 NA TTS (ENSMUSG00000108084.1) lincRNA-TTS (ENSMUSG00000108084.1) -3831 ENSMUSG00000107597.1 ENSMUSG00000107597 ENSMUST00000204021 Gm44764 processed_transcript Interval_164546 chr9 38407251 38408288 + 0 NA exon (ENSMUSG00000049098.4, exon 2 of 2) protein_coding-exon (ENSMUSG00000049098.4, exon 2 of 2) 6071 ENSMUSG00000049098.4 ENSMUSG00000049098 ENSMUST00000056364 Olfr147 protein_coding Interval_96790 chr2 128272263 128273889 + 0 NA intron (ENSMUSG00000074813.14, intron 2 of 3) lincRNA-intron (ENSMUSG00000074813.14, intron 2 of 4) 83089 ENSMUSG00000085750.1 ENSMUSG00000085750 ENSMUST00000152439 Gm14009 lincRNA Interval_114848 chr4 86285155 86285488 + 0 NA intron (ENSMUSG00000066113.16, intron 14 of 28) protein_coding-intron (ENSMUSG00000066113.16, intron 1 of 15) 157020 ENSMUSG00000083272.1 ENSMUSG00000083272 ENSMUST00000118478 Gm12550 processed_pseudogene Interval_77081 chr17 86330584 86331126 + 0 NA intron (ENSMUSG00000045038.14, intron 1 of 14) protein_coding-intron (ENSMUSG00000045038.14, intron 2 of 15) -43677 ENSMUSG00000100738.1 ENSMUSG00000100738 ENSMUST00000191222 2010106C02Rik antisense Interval_6778 chr1 119420320 119422810 + 0 NA exon (ENSMUSG00000037035.5, exon 1 of 2) protein_coding-exon (ENSMUSG00000037035.5, exon 1 of 2) 683 ENSMUSG00000037035.5 ENSMUSG00000037035 ENSMUST00000038765 Inhbb protein_coding Interval_154803 chr8 23469762 23471104 + 0 NA Intergenic Intergenic 58931 ENSMUSG00000031548.7 ENSMUSG00000031548 ENSMUST00000033952 Sfrp1 protein_coding Interval_146401 chr7 45693617 45695239 + 0 NA promoter-TSS (ENSMUSG00000040364.8) protein_coding-promoter-TSS (ENSMUSG00000040364.8) -26 ENSMUSG00000040364.8 ENSMUSG00000040364 ENSMUST00000040636 Sec1 protein_coding Interval_128112 chr5 111043626 111045499 + 0 NA intron (ENSMUSG00000033209.17, intron 2 of 22) protein_coding-intron (ENSMUSG00000033209.17, intron 2 of 23) 16010 ENSMUSG00000105890.1 ENSMUSG00000105890 ENSMUST00000197083 Gm42780 TEC Interval_74362 chr17 49458225 49458585 + 0 NA TTS (ENSMUSG00000040260.8) protein_coding-TTS (ENSMUSG00000040260.8) -29165 ENSMUSG00000092268.1 ENSMUSG00000092268 ENSMUST00000172972 Gm20540 processed_transcript Interval_103975 chr3 55782455 55783940 + 0 NA exon (ENSMUSG00000056947.5, exon 1 of 1) protein_coding-exon (ENSMUSG00000056947.5, exon 1 of 1) 687 ENSMUSG00000056947.5 ENSMUSG00000056947 ENSMUST00000075422 Mab21l1 protein_coding Interval_109794 chr3 147137254 147137489 + 0 NA Intergenic Intergenic 41187 ENSMUSG00000103334.1 ENSMUSG00000103334 ENSMUST00000193142 Gm29771 lincRNA Interval_152764 chr7 137339917 137340352 + 0 NA Intergenic Intergenic -3705 ENSMUSG00000109677.1 ENSMUSG00000109677 ENSMUST00000211531 Gm45514 processed_pseudogene Interval_136885 chr6 62917927 62918894 + 0 NA Intergenic Intergenic -10736 ENSMUSG00000107854.1 ENSMUSG00000107854 ENSMUST00000204361 Gm5001 unprocessed_pseudogene Interval_60555 chr15 74913842 74914865 + 0 NA Intergenic Intergenic -10091 ENSMUSG00000100880.2 ENSMUSG00000100880 ENSMUST00000186324 Gm6610 processed_pseudogene Interval_126956 chr5 98329071 98330075 + 0 NA intron (ENSMUSG00000057816.7, intron 1 of 1) protein_coding-intron (ENSMUSG00000057816.7, intron 1 of 5) 217 ENSMUSG00000057816.7 ENSMUSG00000057816 ENSMUST00000196339 Cfap299 protein_coding Interval_165148 chr9 44838578 44839151 + 0 NA intron (ENSMUSG00000002028.13, intron 8 of 23) protein_coding-intron (ENSMUSG00000002028.13, intron 10 of 35) 20311 ENSMUSG00000111017.1 ENSMUSG00000111017 ENSMUST00000213541 Gm48314 TEC Interval_149734 chr7 101011359 101012477 + 0 NA promoter-TSS (ENSMUSG00000032860.5) protein_coding-promoter-TSS (ENSMUSG00000032860.5) 6950 ENSMUSG00000108895.1 ENSMUSG00000108895 ENSMUST00000208100 Gm45070 processed_pseudogene Interval_148055 chr7 78905910 78906104 + 0 NA TTS (ENSMUSG00000030609.18) protein_coding-TTS (ENSMUSG00000030609.18) 3646 ENSMUSG00000030609.18 ENSMUSG00000030609 ENSMUST00000205861 Aen protein_coding Interval_30640 chr11 95621106 95622776 + 0 NA promoter-TSS (ENSMUSG00000084856.1) lincRNA-promoter-TSS (ENSMUSG00000084856.1) -719 ENSMUSG00000084856.1 ENSMUSG00000084856 ENSMUST00000156822 Gm11528 lincRNA Interval_113625 chr4 57082687 57083753 + 0 NA intron (ENSMUSG00000028434.12, intron 5 of 9) protein_coding-intron (ENSMUSG00000028434.12, intron 6 of 15) -12661 ENSMUSG00000028434.12 ENSMUSG00000028434 ENSMUST00000133859 Epb41l4b protein_coding Interval_115939 chr4 106435675 106437536 + 0 NA intron (ENSMUSG00000028514.15, intron 66 of 67) protein_coding-intron (ENSMUSG00000028514.15, intron 66 of 67) 27724 ENSMUSG00000044254.6 ENSMUSG00000044254 ENSMUST00000049507 Pcsk9 protein_coding Interval_125443 chr5 67188958 67189313 + 0 NA Intergenic Intergenic 61632 ENSMUSG00000106995.1 ENSMUSG00000106995 ENSMUST00000201933 Gm33167 TEC Interval_58745 chr15 37729046 37729889 + 0 NA intron (ENSMUSG00000115157.1, intron 2 of 7) protein_coding-intron (ENSMUSG00000051359.15, intron 1 of 6) 4868 ENSMUSG00000115157.1 ENSMUSG00000115157 ENSMUST00000145909 Gm49397 processed_transcript Interval_95145 chr2 104263905 104264127 + 0 NA intron (ENSMUSG00000087473.7, intron 2 of 2) protein_coding-intron (ENSMUSG00000068373.15, intron 1 of 20) 7344 ENSMUSG00000087473.7 ENSMUSG00000087473 ENSMUST00000150450 Gm13883 antisense Interval_121227 chr4 154209828 154210475 + 0 NA intron (ENSMUSG00000057751.14, intron 3 of 36) protein_coding-intron (ENSMUSG00000057751.14, intron 3 of 36) -10390 ENSMUSG00000081276.1 ENSMUSG00000081276 ENSMUST00000121194 Gm13132 processed_pseudogene Interval_109205 chr3 137879205 137880118 + 0 NA intron (ENSMUSG00000074212.7, intron 1 of 3) protein_coding-intron (ENSMUSG00000074212.7, intron 1 of 7) -1535 ENSMUSG00000106629.1 ENSMUSG00000106629 ENSMUST00000198291 Gm40155 antisense Interval_94564 chr2 92257459 92257887 + 0 NA intron (ENSMUSG00000058318.15, intron 6 of 6) protein_coding-intron (ENSMUSG00000058318.15, intron 4 of 15) 24568 ENSMUSG00000083951.1 ENSMUSG00000083951 ENSMUST00000122371 Gm13786 processed_pseudogene Interval_173033 chrX 66493404 66493646 + 0 NA Intergenic Intergenic 45359 ENSMUSG00000089398.1 ENSMUSG00000089398 ENSMUST00000158773 Gm23028 misc_RNA Interval_62885 chr15 97713123 97713995 + 0 NA intron (ENSMUSG00000022468.12, intron 6 of 7) protein_coding-intron (ENSMUSG00000022468.12, intron 7 of 8) 7603 ENSMUSG00000022468.12 ENSMUSG00000022468 ENSMUST00000100249 Endou protein_coding Interval_166848 chr9 63181659 63182550 + 0 NA intron (ENSMUSG00000058444.8, intron 21 of 21) protein_coding-intron (ENSMUSG00000058444.8, intron 21 of 21) -35093 ENSMUSG00000022245.15 ENSMUSG00000022245 ENSMUST00000055281 Skor1 protein_coding Interval_97997 chr2 146527545 146527732 + 0 NA Intergenic Intergenic -15293 ENSMUSG00000085796.1 ENSMUSG00000085796 ENSMUST00000147212 4933406D12Rik lincRNA Interval_60607 chr15 75646310 75647150 + 0 NA TTS (ENSMUSG00000099034.7) transcribed_unitary_pseudogene-TTS (ENSMUSG00000099034.7) 3244 ENSMUSG00000099034.7 ENSMUSG00000099034 ENSMUST00000184665 2810039B14Rik transcribed_unitary_pseudogene Interval_165034 chr9 44059056 44059833 + 0 NA Intergenic Intergenic 12024 ENSMUSG00000111415.1 ENSMUSG00000111415 ENSMUST00000216448 Gm39325 antisense Interval_116824 chr4 117484099 117485299 + 0 NA intron (ENSMUSG00000028677.19, intron 2 of 2) protein_coding-intron (ENSMUSG00000028677.19, intron 2 of 14) -11753 ENSMUSG00000087228.1 ENSMUSG00000087228 ENSMUST00000132690 Gm12827 lincRNA Interval_155204 chr8 27437802 27438386 + 0 NA Intergenic Intergenic -9297 ENSMUSG00000110333.1 ENSMUSG00000110333 ENSMUST00000210427 Gm45861 protein_coding Interval_20894 chr10 121792646 121792846 + 0 NA exon (ENSMUSG00000020121.15, exon 20 of 22) protein_coding-exon (ENSMUSG00000020121.15, exon 20 of 22) 39312 ENSMUSG00000112596.1 ENSMUSG00000112596 ENSMUST00000218664 Gm48804 TEC Interval_69013 chr16 90125394 90126099 + 0 NA intron (ENSMUSG00000002489.16, intron 1 of 11) protein_coding-intron (ENSMUSG00000002489.16, intron 1 of 11) 35763 ENSMUSG00000116536.1 ENSMUSG00000116536 ENSMUST00000232386 Gm2805 processed_pseudogene Interval_133750 chr6 11237947 11238789 + 0 NA Intergenic Intergenic -263990 ENSMUSG00000107948.2 ENSMUSG00000107948 ENSMUST00000205141 AA545190 lincRNA Interval_59809 chr15 59469956 59470763 + 0 NA intron (ENSMUSG00000059586.10, intron 4 of 6) protein_coding-intron (ENSMUSG00000059586.10, intron 4 of 6) 96074 ENSMUSG00000059586.10 ENSMUSG00000059586 ENSMUST00000079703 Nsmce2 protein_coding Interval_105474 chr3 86862652 86864841 + 0 NA promoter-TSS (ENSMUSG00000104074.1) processed_pseudogene-promoter-TSS (ENSMUSG00000104074.1) -746 ENSMUSG00000104074.1 ENSMUSG00000104074 ENSMUST00000195159 Gm37025 processed_pseudogene Interval_26306 chr11 55967144 55967614 + 0 NA intron (ENSMUSG00000086020.1, intron 1 of 4) antisense-intron (ENSMUSG00000086020.1, intron 1 of 4) 73631 ENSMUSG00000037393.2 ENSMUSG00000037393 ENSMUST00000037682 Nmur2 protein_coding Interval_35391 chr12 21271983 21272262 + 0 NA promoter-TSS (ENSMUSG00000062352.15) protein_coding-promoter-TSS (ENSMUSG00000062352.15) 14097 ENSMUSG00000062352.15 ENSMUSG00000062352 ENSMUST00000173614 Itgb1bp1 protein_coding Interval_101463 chr2 181570232 181570480 + 0 NA promoter-TSS (ENSMUSG00000089917.7) protein_coding-promoter-TSS (ENSMUSG00000089917.7) 4120 ENSMUSG00000089917.7 ENSMUSG00000089917 ENSMUST00000131949 Uckl1 protein_coding Interval_111800 chr4 29644873 29645440 + 0 NA Intergenic Intergenic 155000 ENSMUSG00000082058.1 ENSMUSG00000082058 ENSMUST00000118135 Gm11923 processed_pseudogene Interval_65833 chr16 29656686 29659063 + 0 NA Intergenic Intergenic 70860 ENSMUSG00000038084.16 ENSMUSG00000038084 ENSMUST00000160101 Opa1 protein_coding Interval_86407 chr19 40282622 40282840 + 0 NA TTS (ENSMUSG00000117793.1) processed_pseudogene-TTS (ENSMUSG00000117793.1) 454 ENSMUSG00000117793.1 ENSMUSG00000117793 ENSMUST00000237233 Gm5693 processed_pseudogene Interval_83778 chr19 4644107 4644732 + 0 NA intron (ENSMUSG00000071691.11, intron 11 of 15) protein_coding-intron (ENSMUSG00000071691.11, intron 11 of 14) -18168 ENSMUSG00000071691.11 ENSMUSG00000071691 ENSMUST00000096325 Gm960 protein_coding Interval_384 chr1 4800436 4800673 + 0 NA Intergenic Intergenic -7276 ENSMUSG00000025903.14 ENSMUSG00000025903 ENSMUST00000141278 Lypla1 protein_coding Interval_88632 chr2 7944814 7945623 + 0 NA Intergenic Intergenic -163810 ENSMUSG00000085070.1 ENSMUSG00000085070 ENSMUST00000141649 Gm13211 lincRNA Interval_151571 chr7 123964505 123966044 + 0 NA intron (ENSMUSG00000098160.3, intron 1 of 1) processed_transcript-intron (ENSMUSG00000098160.3, intron 1 of 1) 2611 ENSMUSG00000098160.3 ENSMUSG00000098160 ENSMUST00000194314 Gm26974 processed_transcript Interval_68768 chr16 85898685 85901824 + 0 NA exon (ENSMUSG00000022894.6, exon 1 of 8) protein_coding-exon (ENSMUSG00000022894.6, exon 1 of 8) 1574 ENSMUSG00000022894.6 ENSMUSG00000022894 ENSMUST00000023611 Adamts5 protein_coding Interval_123686 chr5 34496632 34496871 + 0 NA exon (ENSMUSG00000059866.13, exon 7 of 7) protein_coding-exon (ENSMUSG00000059866.13, exon 7 of 7) 9437 ENSMUSG00000106678.1 ENSMUSG00000106678 ENSMUST00000200867 Gm43457 TEC Interval_9204 chr1 155052660 155053696 + 0 NA intron (ENSMUSG00000101880.1, intron 1 of 3) lincRNA-intron (ENSMUSG00000101880.1, intron 1 of 3) 4001 ENSMUSG00000101880.1 ENSMUSG00000101880 ENSMUST00000190720 Gm29282 lincRNA Interval_82215 chr18 69291519 69291890 + 0 NA Intergenic Intergenic 35416 ENSMUSG00000098060.1 ENSMUSG00000098060 ENSMUST00000183237 Gm4842 processed_pseudogene Interval_170250 chr9 106463887 106465981 + 0 NA TTS (ENSMUSG00000023495.13) protein_coding-TTS (ENSMUSG00000023495.13) 1004 ENSMUSG00000091735.2 ENSMUSG00000091735 ENSMUST00000164834 Gpr62 protein_coding Interval_23213 chr11 20591695 20592139 + 0 NA intron (ENSMUSG00000049800.13, intron 1 of 1) protein_coding-intron (ENSMUSG00000049800.13, intron 1 of 1) -16728 ENSMUSG00000083555.1 ENSMUSG00000083555 ENSMUST00000121890 Gm12035 processed_pseudogene Interval_126807 chr5 93092237 93094651 + 0 NA promoter-TSS (ENSMUSG00000058013.11) protein_coding-promoter-TSS (ENSMUSG00000058013.11) -92 ENSMUSG00000058013.11 ENSMUSG00000058013 ENSMUST00000201695 Septin11 protein_coding Interval_120952 chr4 151899865 151900319 + 0 NA Intergenic Intergenic 16322 ENSMUSG00000104142.1 ENSMUSG00000104142 ENSMUST00000191938 Gm37141 TEC Interval_103158 chr3 36082924 36083136 + 0 NA intron (ENSMUSG00000027710.14, intron 3 of 5) protein_coding-intron (ENSMUSG00000027710.14, intron 11 of 17) -5829 ENSMUSG00000105055.1 ENSMUSG00000105055 ENSMUST00000199794 Gm43079 antisense Interval_50825 chr14 20047952 20049103 + 0 NA Intergenic Intergenic 9770 ENSMUSG00000114498.1 ENSMUSG00000114498 ENSMUST00000224881 Gm48339 processed_pseudogene Interval_149597 chr7 99944443 99947223 + 0 NA TTS (ENSMUSG00000108823.1) processed_pseudogene-TTS (ENSMUSG00000108823.1) 771 ENSMUSG00000108823.1 ENSMUSG00000108823 ENSMUST00000208954 Gm18959 processed_pseudogene Interval_10761 chr1 174415257 174415543 + 0 NA Intergenic Intergenic -8664 ENSMUSG00000051509.6 ENSMUSG00000051509 ENSMUST00000053178 Olfr414 protein_coding Interval_24852 chr11 40419368 40420925 + 0 NA Intergenic Intergenic 3208 ENSMUSG00000082295.1 ENSMUSG00000082295 ENSMUST00000121775 Gm12133 processed_pseudogene Interval_74103 chr17 46578781 46579097 + 0 NA intron (ENSMUSG00000023972.10, intron 10 of 19) protein_coding-intron (ENSMUSG00000023972.10, intron 10 of 19) -5989 ENSMUSG00000023972.10 ENSMUSG00000023972 ENSMUST00000044442 Ptk7 protein_coding Interval_38440 chr12 79040962 79042007 + 0 NA intron (ENSMUSG00000060716.7, intron 2 of 28) protein_coding-intron (ENSMUSG00000060716.7, intron 2 of 28) 5848 ENSMUSG00000060716.7 ENSMUSG00000060716 ENSMUST00000219946 Plekhh1 protein_coding Interval_98291 chr2 150836952 150838478 + 0 NA intron (ENSMUSG00000032046.15, intron 9 of 9) protein_coding-intron (ENSMUSG00000032046.15, intron 9 of 12) 4855 ENSMUSG00000032046.15 ENSMUSG00000032046 ENSMUST00000129228 Abhd12 protein_coding Interval_117369 chr4 123293921 123296450 + 0 NA intron (ENSMUSG00000011257.19, intron 9 of 14) protein_coding-intron (ENSMUSG00000011257.19, intron 9 of 13) 2033 ENSMUSG00000065778.1 ENSMUSG00000065778 ENSMUST00000083844 Gm22154 snoRNA Interval_40007 chr12 100451808 100452977 + 0 NA intron (ENSMUSG00000033530.8, intron 1 of 7) protein_coding-intron (ENSMUSG00000033530.8, intron 4 of 19) -7732 ENSMUSG00000113864.1 ENSMUSG00000113864 ENSMUST00000222952 Gm48381 TEC Interval_27617 chr11 69070313 69071344 + 0 NA promoter-TSS (ENSMUSG00000020895.14) protein_coding-promoter-TSS (ENSMUSG00000020895.14) -26 ENSMUSG00000020895.14 ENSMUSG00000020895 ENSMUST00000125215 Tmem107 protein_coding Interval_162401 chr8 128042733 128043948 + 0 NA Intergenic Intergenic 234885 ENSMUSG00000099326.1 ENSMUSG00000099326 ENSMUST00000184910 Mir21c miRNA Interval_135387 chr6 38850905 38851721 + 0 NA intron (ENSMUSG00000061436.15, intron 1 of 14) protein_coding-intron (ENSMUSG00000061436.15, intron 1 of 14) 24610 ENSMUSG00000061436.15 ENSMUSG00000061436 ENSMUST00000114855 Hipk2 protein_coding Interval_112370 chr4 40886041 40886592 + 0 NA Intergenic Intergenic 27039 ENSMUSG00000081309.3 ENSMUSG00000081309 ENSMUST00000117674 Gm12397 processed_pseudogene Interval_171700 chr9 120234968 120235234 + 0 NA intron (ENSMUSG00000111360.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000111360.1, intron 1 of 2) -1540 ENSMUSG00000111360.1 ENSMUSG00000111360 ENSMUST00000216718 Gm38642 lincRNA Interval_14655 chr10 38059122 38059580 + 0 NA Intergenic Intergenic 62710 ENSMUSG00000111488.1 ENSMUSG00000111488 ENSMUST00000213538 Gm31378 lincRNA Interval_46576 chr13 67319508 67319763 + 0 NA TTS (ENSMUSG00000098781.1) protein_coding-TTS (ENSMUSG00000098781.1) -10728 ENSMUSG00000114863.1 ENSMUSG00000114863 ENSMUST00000225398 Gm48824 lincRNA Interval_69997 chr17 4189596 4190277 + 0 NA Intergenic Intergenic -67834 ENSMUSG00000116615.1 ENSMUSG00000116615 ENSMUST00000231319 4930548J01Rik processed_transcript Interval_124318 chr5 43885661 43885853 + 0 NA intron (ENSMUSG00000029084.5, intron 1 of 7) protein_coding-intron (ENSMUSG00000029084.5, intron 1 of 7) 9727 ENSMUSG00000086479.2 ENSMUSG00000086479 ENSMUST00000123363 Gm16014 sense_intronic Interval_52781 chr14 49855322 49856422 + 0 NA Intergenic Intergenic 46127 ENSMUSG00000048933.8 ENSMUSG00000048933 ENSMUST00000213271 Olfr722 protein_coding Interval_12253 chr1 191142662 191144282 + 0 NA Intergenic Intergenic 10815 ENSMUSG00000102777.1 ENSMUSG00000102777 ENSMUST00000195344 Gm38161 lincRNA Interval_76831 chr17 84384832 84386438 + 0 NA intron (ENSMUSG00000024251.10, intron 11 of 14) protein_coding-intron (ENSMUSG00000024251.10, intron 26 of 37) -5794 ENSMUSG00000096415.1 ENSMUSG00000096415 ENSMUST00000179017 Gm24722 snRNA Interval_128427 chr5 113269801 113270352 + 0 NA intron (ENSMUSG00000042216.13, intron 16 of 17) protein_coding-intron (ENSMUSG00000042216.13, intron 15 of 24) 9260 ENSMUSG00000042216.13 ENSMUSG00000042216 ENSMUST00000140981 Sgsm1 protein_coding Interval_174566 chrX 158111804 158113269 + 0 NA Intergenic Intergenic -37560 ENSMUSG00000082076.1 ENSMUSG00000082076 ENSMUST00000120024 Gm8659 processed_pseudogene Interval_109657 chr3 145779802 145781608 + 0 NA intron (ENSMUSG00000028194.15, intron 1 of 5) protein_coding-intron (ENSMUSG00000028194.15, intron 1 of 5) -29774 ENSMUSG00000028194.15 ENSMUSG00000028194 ENSMUST00000127193 Ddah1 protein_coding Interval_77063 chr17 86150915 86151410 + 0 NA Intergenic Intergenic -24413 ENSMUSG00000117546.1 ENSMUSG00000117546 ENSMUST00000234087 AC154542.1 TEC Interval_78951 chr18 22530417 22530745 + 0 NA TTS (ENSMUSG00000045215.17) protein_coding-TTS (ENSMUSG00000045215.17) 186335 ENSMUSG00000045215.17 ENSMUSG00000045215 ENSMUST00000097655 Asxl3 protein_coding Interval_5784 chr1 91788569 91789654 + 0 NA Intergenic Intergenic -12359 ENSMUSG00000007805.4 ENSMUSG00000007805 ENSMUST00000186075 Twist2 protein_coding Interval_150680 chr7 113273558 113274374 + 0 NA intron (ENSMUSG00000055116.8, intron 3 of 20) protein_coding-intron (ENSMUSG00000055116.8, intron 2 of 19) 21371 ENSMUSG00000109959.1 ENSMUSG00000109959 ENSMUST00000211342 Gm45355 antisense Interval_57611 chr15 12812231 12813334 + 0 NA TTS (ENSMUSG00000022195.7) protein_coding-TTS (ENSMUSG00000022195.7) -7609 ENSMUSG00000115024.1 ENSMUSG00000115024 ENSMUST00000228527 Gm49277 processed_pseudogene Interval_46632 chr13 67786543 67786971 + 0 NA TTS (ENSMUSG00000090659.9) protein_coding-TTS (ENSMUSG00000090659.9) 7041 ENSMUSG00000090659.9 ENSMUSG00000090659 ENSMUST00000180507 Zfp493 protein_coding Interval_98637 chr2 153712715 153713527 + 0 NA intron (ENSMUSG00000082079.2, intron 5 of 18) protein_coding-intron (ENSMUSG00000082079.2, intron 5 of 18) 16469 ENSMUSG00000082079.2 ENSMUSG00000082079 ENSMUST00000119996 Dnmt3c protein_coding Interval_120108 chr4 141880745 141882243 + 0 NA Intergenic Intergenic -4160 ENSMUSG00000085922.1 ENSMUSG00000085922 ENSMUST00000152351 Fhad1os2 antisense Interval_97346 chr2 135170414 135170620 + 0 NA exon (ENSMUSG00000085247.1, exon 6 of 6) antisense-exon (ENSMUSG00000085247.1, exon 6 of 6) 45099 ENSMUSG00000085247.1 ENSMUSG00000085247 ENSMUST00000138303 4930545L23Rik antisense Interval_103859 chr3 53757269 53757647 + 0 NA intron (ENSMUSG00000106270.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000106270.1, intron 1 of 1) 727 ENSMUSG00000106270.1 ENSMUSG00000106270 ENSMUST00000195997 C820005J03Rik lincRNA Interval_111396 chr4 20549978 20550239 + 0 NA intron (ENSMUSG00000055761.14, intron 1 of 5) protein_coding-intron (ENSMUSG00000055761.14, intron 1 of 4) 159012 ENSMUSG00000081964.1 ENSMUSG00000081964 ENSMUST00000117877 Gm11873 processed_pseudogene Interval_92296 chr2 58486127 58487398 + 0 NA intron (ENSMUSG00000026836.15, intron 2 of 10) protein_coding-intron (ENSMUSG00000026836.15, intron 3 of 10) 16646 ENSMUSG00000091922.1 ENSMUSG00000091922 ENSMUST00000167423 Gm17409 TEC Interval_29502 chr11 84491149 84492097 + 0 NA promoter-TSS (ENSMUSG00000018697.14) protein_coding-promoter-TSS (ENSMUSG00000018697.14) 21899 ENSMUSG00000018697.14 ENSMUSG00000018697 ENSMUST00000148434 Aatf protein_coding Interval_100235 chr2 167828198 167828493 + 0 NA exon (ENSMUSG00000087684.1, exon 2 of 2) lincRNA-exon (ENSMUSG00000087684.1, exon 2 of 2) 5301 ENSMUSG00000087684.1 ENSMUSG00000087684 ENSMUST00000143649 1200007C13Rik lincRNA Interval_76244 chr17 78400339 78400977 + 0 NA exon (ENSMUSG00000056121.16, exon 5 of 8) protein_coding-exon (ENSMUSG00000056121.16, exon 5 of 8) 1877 ENSMUSG00000056121.16 ENSMUSG00000056121 ENSMUST00000234900 Fez2 protein_coding Interval_23891 chr11 27753505 27754422 + 0 NA Intergenic Intergenic -129149 ENSMUSG00000084064.1 ENSMUSG00000084064 ENSMUST00000112483 Gm12079 processed_pseudogene Interval_120106 chr4 141866996 141867691 + 0 NA intron (ENSMUSG00000040659.3, intron 1 of 3) protein_coding-intron (ENSMUSG00000040659.3, intron 1 of 3) 7577 ENSMUSG00000040659.3 ENSMUSG00000040659 ENSMUST00000036854 Efhd2 protein_coding Interval_2925 chr1 50899909 50900781 + 0 NA promoter-TSS (ENSMUSG00000026109.14) protein_coding-promoter-TSS (ENSMUSG00000026109.14) -302 ENSMUSG00000026109.14 ENSMUSG00000026109 ENSMUST00000081851 Tmeff2 protein_coding Interval_74250 chr17 47719972 47720900 + 0 NA Intergenic Intergenic -6408 ENSMUSG00000023987.14 ENSMUSG00000023987 ENSMUST00000144955 Pgc protein_coding Interval_79018 chr18 23982960 23983333 + 0 NA intron (ENSMUSG00000024274.10, intron 1 of 4) transcribed_unprocessed_pseudogene-intron (ENSMUSG00000024274.10, intron 1 of 4) 4080 ENSMUSG00000024274.10 ENSMUSG00000024274 ENSMUST00000224144 Zscan30 transcribed_unprocessed_pseudogene Interval_162291 chr8 126826024 126827027 + 0 NA exon (ENSMUSG00000110697.1, exon 5 of 9) lincRNA-exon (ENSMUSG00000110697.1, exon 5 of 9) -12708 ENSMUSG00000110498.1 ENSMUSG00000110498 ENSMUST00000212914 A630001O12Rik lincRNA Interval_149992 chr7 104256376 104257855 + 0 NA intron (ENSMUSG00000056144.14, intron 4 of 7) protein_coding-intron (ENSMUSG00000056144.14, intron 4 of 7) 5059 ENSMUSG00000111737.1 ENSMUSG00000111737 ENSMUST00000217156 Gm47248 antisense Interval_138465 chr6 88445017 88447913 + 0 NA promoter-TSS (ENSMUSG00000033216.9) protein_coding-promoter-TSS (ENSMUSG00000033216.9) 62 ENSMUSG00000033216.9 ENSMUSG00000033216 ENSMUST00000205014 Eefsec protein_coding Interval_17374 chr10 76185013 76185731 + 0 NA intron (ENSMUSG00000020229.4, intron 13 of 14) protein_coding-intron (ENSMUSG00000020229.4, intron 13 of 14) 13609 ENSMUSG00000112625.1 ENSMUSG00000112625 ENSMUST00000218019 Gm2628 processed_pseudogene Interval_93815 chr2 77169402 77170609 + 0 NA intron (ENSMUSG00000044033.16, intron 1 of 23) protein_coding-intron (ENSMUSG00000044033.16, intron 1 of 11) 29422 ENSMUSG00000042272.17 ENSMUSG00000042272 ENSMUST00000139021 Sestd1 protein_coding Interval_152530 chr7 133915787 133916850 + 0 NA intron (ENSMUSG00000054555.11, intron 7 of 12) protein_coding-intron (ENSMUSG00000054555.11, intron 17 of 22) 23423 ENSMUSG00000093032.1 ENSMUSG00000093032 ENSMUST00000175291 Gm23631 miRNA Interval_36599 chr12 51188021 51188884 + 0 NA Intergenic Intergenic -53750 ENSMUSG00000112926.1 ENSMUSG00000112926 ENSMUST00000218047 Gm7172 processed_pseudogene Interval_98004 chr2 146570963 146572331 + 0 NA Intergenic Intergenic 28716 ENSMUSG00000085796.1 ENSMUSG00000085796 ENSMUST00000147212 4933406D12Rik lincRNA Interval_151781 chr7 126624272 126626254 + 0 NA promoter-TSS (ENSMUSG00000030717.9) protein_coding-promoter-TSS (ENSMUSG00000030717.9) 5598 ENSMUSG00000030717.9 ENSMUSG00000030717 ENSMUST00000191413 Nupr1 protein_coding Interval_33340 chr11 116017909 116018515 + 0 NA Intergenic Intergenic -5493 ENSMUSG00000020766.4 ENSMUSG00000020766 ENSMUST00000021114 Galk1 protein_coding Interval_94107 chr2 84229403 84230261 + 0 NA Intergenic Intergenic 79777 ENSMUSG00000093115.1 ENSMUSG00000093115 ENSMUST00000175374 Gm25972 miRNA Interval_39222 chr12 85993677 85993867 + 0 NA intron (ENSMUSG00000012609.19, intron 1 of 5) protein_coding-intron (ENSMUSG00000012609.19, intron 29 of 33) -14751 ENSMUSG00000097902.2 ENSMUSG00000097902 ENSMUST00000181727 Gm26531 antisense Interval_85523 chr19 27976532 27976939 + 0 NA intron (ENSMUSG00000040929.17, intron 1 of 9) protein_coding-intron (ENSMUSG00000040929.17, intron 1 of 15) -17462 ENSMUSG00000092182.1 ENSMUSG00000092182 ENSMUST00000172891 Gm20407 antisense Interval_88228 chr19 60833768 60834461 + 0 NA intron (ENSMUSG00000024993.15, intron 2 of 2) protein_coding-intron (ENSMUSG00000024993.15, intron 8 of 8) -18298 ENSMUSG00000083036.1 ENSMUSG00000083036 ENSMUST00000121724 Gm15959 processed_pseudogene Interval_127033 chr5 99799047 99799293 + 0 NA Intergenic Intergenic 40820 ENSMUSG00000104731.1 ENSMUSG00000104731 ENSMUST00000200464 Gm43249 processed_pseudogene Interval_97827 chr2 144297704 144298940 + 0 NA Intergenic Intergenic 27659 ENSMUSG00000027424.11 ENSMUSG00000027424 ENSMUST00000110027 Mgme1 protein_coding Interval_148306 chr7 80396479 80396856 + 0 NA promoter-TSS (ENSMUSG00000030530.15) protein_coding-promoter-TSS (ENSMUSG00000030530.15) 5910 ENSMUSG00000030530.15 ENSMUSG00000030530 ENSMUST00000147150 Furin protein_coding Interval_138113 chr6 85262604 85263371 + 0 NA intron (ENSMUSG00000033720.12, intron 9 of 12) protein_coding-intron (ENSMUSG00000033720.12, intron 9 of 13) 69468 ENSMUSG00000033726.8 ENSMUSG00000033726 ENSMUST00000173919 Emx1 protein_coding Interval_131704 chr5 139407456 139407968 + 0 NA intron (ENSMUSG00000044092.8, intron 2 of 2) protein_coding-intron (ENSMUSG00000044092.8, intron 1 of 1) 1247 ENSMUSG00000044092.8 ENSMUSG00000044092 ENSMUST00000164078 C130050O18Rik protein_coding Interval_57761 chr15 19118572 19118793 + 0 NA Intergenic Intergenic -52113 ENSMUSG00000115815.1 ENSMUSG00000115815 ENSMUST00000226382 Gm8328 processed_pseudogene Interval_60296 chr15 72589993 72590875 + 0 NA intron (ENSMUSG00000047921.17, intron 21 of 21) protein_coding-intron (ENSMUSG00000047921.17, intron 21 of 21) 2151 ENSMUSG00000116088.1 ENSMUSG00000116088 ENSMUST00000230426 Gm49460 antisense Interval_53801 chr14 61949607 61950187 + 0 NA Intergenic Intergenic 28521 ENSMUSG00000114706.1 ENSMUSG00000114706 ENSMUST00000224682 Gm47952 processed_pseudogene Interval_36254 chr12 40341397 40341674 + 0 NA intron (ENSMUSG00000055917.15, intron 5 of 12) protein_coding-intron (ENSMUSG00000055917.15, intron 4 of 11) -12557 ENSMUSG00000055917.15 ENSMUSG00000055917 ENSMUST00000221847 Zfp277 protein_coding Interval_10767 chr1 174484789 174486507 + 0 NA Intergenic Intergenic 43566 ENSMUSG00000066671.4 ENSMUSG00000066671 ENSMUST00000085861 Olfr220 protein_coding Interval_27698 chr11 69546093 69547959 + 0 NA intron (ENSMUSG00000005237.14, intron 1 of 13) protein_coding-intron (ENSMUSG00000005237.14, intron 1 of 85) 13179 ENSMUSG00000003934.5 ENSMUSG00000003934 ENSMUST00000004036 Efnb3 protein_coding Interval_165665 chr9 50782177 50782815 + 0 NA intron (ENSMUSG00000032059.13, intron 3 of 13) protein_coding-intron (ENSMUSG00000032059.13, intron 3 of 14) 12434 ENSMUSG00000037845.14 ENSMUSG00000037845 ENSMUST00000177384 Fdxacb1 protein_coding Interval_151630 chr7 125501669 125502003 + 0 NA Intergenic Intergenic -23277 ENSMUSG00000030750.13 ENSMUSG00000030750 ENSMUST00000149289 Nsmce1 protein_coding Interval_24789 chr11 37944789 37944959 + 0 NA Intergenic Intergenic 92389 ENSMUSG00000093184.1 ENSMUSG00000093184 ENSMUST00000175443 Gm25693 miRNA Interval_158750 chr8 85857174 85857678 + 0 NA intron (ENSMUSG00000036879.15, intron 2 of 4) protein_coding-intron (ENSMUSG00000036879.15, intron 2 of 31) -2989 ENSMUSG00000090043.1 ENSMUSG00000090043 ENSMUST00000160428 Gm16167 processed_pseudogene Interval_140768 chr6 121149658 121150372 + 0 NA Intergenic Intergenic 33217 ENSMUSG00000108096.1 ENSMUSG00000108096 ENSMUST00000203344 Minpp1-ps processed_pseudogene Interval_122677 chr5 24611960 24613125 + 0 NA intron (ENSMUSG00000028949.13, intron 2 of 13) protein_coding-intron (ENSMUSG00000028949.13, intron 2 of 13) 10594 ENSMUSG00000028949.13 ENSMUSG00000028949 ENSMUST00000199393 Smarcd3 protein_coding Interval_119774 chr4 139876145 139878323 + 0 NA Intergenic Intergenic -33254 ENSMUSG00000087646.1 ENSMUSG00000087646 ENSMUST00000151651 Gm1667 lincRNA Interval_17710 chr10 79687649 79689823 + 0 NA promoter-TSS (ENSMUSG00000054206.2) protein_coding-promoter-TSS (ENSMUSG00000054206.2) 3733 ENSMUSG00000020307.15 ENSMUSG00000020307 ENSMUST00000220328 Cdc34 protein_coding Interval_1889 chr1 34310305 34311410 + 0 NA Intergenic Intergenic 19450 ENSMUSG00000104397.1 ENSMUSG00000104397 ENSMUST00000193131 Gm37958 lincRNA Interval_60828 chr15 77011357 77011583 + 0 NA Intergenic Intergenic -2623 ENSMUSG00000116272.1 ENSMUSG00000116272 ENSMUST00000230714 Gm49540 antisense Interval_40463 chr12 105027600 105027986 + 0 NA exon (ENSMUSG00000113125.1, exon 1 of 1) processed_pseudogene-exon (ENSMUSG00000113125.1, exon 1 of 1) 170 ENSMUSG00000113125.1 ENSMUSG00000113125 ENSMUST00000222037 Gm47650 processed_pseudogene Interval_13125 chr10 11830438 11830740 + 0 NA intron (ENSMUSG00000111995.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000111995.1, intron 1 of 1) 8306 ENSMUSG00000112233.1 ENSMUSG00000112233 ENSMUST00000219464 Gm48698 processed_pseudogene Interval_103996 chr3 56724550 56725799 + 0 NA Intergenic Intergenic 103613 ENSMUSG00000105113.1 ENSMUSG00000105113 ENSMUST00000200018 Gm2622 processed_pseudogene Interval_146433 chr7 45862231 45862459 + 0 NA exon (ENSMUSG00000002771.12, exon 2 of 12) protein_coding-exon (ENSMUSG00000002771.12, exon 2 of 12) 8084 ENSMUSG00000002771.12 ENSMUSG00000002771 ENSMUST00000211250 Grin2d protein_coding Interval_171580 chr9 119340038 119341908 + 0 NA promoter-TSS (ENSMUSG00000032508.8) protein_coding-promoter-TSS (ENSMUSG00000032508.8) -74 ENSMUSG00000036138.16 ENSMUSG00000036138 ENSMUST00000175719 Acaa1a protein_coding Interval_89142 chr2 17251982 17252328 + 0 NA Intergenic Intergenic -66668 ENSMUSG00000085193.1 ENSMUSG00000085193 ENSMUST00000152803 Gm13322 lincRNA Interval_130283 chr5 125403879 125406688 + 0 NA Intergenic Intergenic -15081 ENSMUSG00000008348.9 ENSMUSG00000008348 ENSMUST00000108707 Ubc protein_coding Interval_19496 chr10 100478258 100479072 + 0 NA intron (ENSMUSG00000036676.14, intron 1 of 1) protein_coding-intron (ENSMUSG00000036676.14, intron 1 of 13) 8661 ENSMUSG00000036676.14 ENSMUSG00000036676 ENSMUST00000134477 Tmtc3 protein_coding Interval_80395 chr18 41666773 41667073 + 0 NA Intergenic Intergenic 27129 ENSMUSG00000117708.1 ENSMUSG00000117708 ENSMUST00000237940 Gm18530 processed_pseudogene Interval_23191 chr11 20450555 20451427 + 0 NA Intergenic Intergenic 4579 ENSMUSG00000083878.3 ENSMUSG00000083878 ENSMUST00000119032 Gm12034 processed_pseudogene Interval_93591 chr2 74697173 74699213 + 0 NA promoter-TSS (ENSMUSG00000100209.1) antisense-promoter-TSS (ENSMUSG00000100209.1) 466 ENSMUSG00000043342.9 ENSMUSG00000043342 ENSMUST00000059272 Hoxd9 protein_coding Interval_110394 chr3 157708536 157708841 + 0 NA Intergenic Intergenic 17720 ENSMUSG00000106632.1 ENSMUSG00000106632 ENSMUST00000199819 Gm33466 lincRNA Interval_82079 chr18 67603268 67603580 + 0 NA intron (ENSMUSG00000024533.17, intron 1 of 16) protein_coding-intron (ENSMUSG00000024533.17, intron 1 of 16) 35565 ENSMUSG00000073542.3 ENSMUSG00000073542 ENSMUST00000237975 Cep76 protein_coding Interval_96584 chr2 125936573 125936831 + 0 NA intron (ENSMUSG00000027207.15, intron 7 of 7) protein_coding-intron (ENSMUSG00000027207.15, intron 7 of 9) 70459 ENSMUSG00000027207.15 ENSMUSG00000027207 ENSMUST00000110454 Galk2 protein_coding Interval_29593 chr11 85234416 85235702 + 0 NA promoter-TSS (ENSMUSG00000018481.9) protein_coding-promoter-TSS (ENSMUSG00000018481.9) 71 ENSMUSG00000018481.9 ENSMUSG00000018481 ENSMUST00000018625 Appbp2 protein_coding Interval_19930 chr10 111333942 111334255 + 0 NA Intergenic Intergenic -3026 ENSMUSG00000112246.1 ENSMUSG00000112246 ENSMUST00000219123 Gm40761 lincRNA Interval_131629 chr5 138934623 138935784 + 0 NA Intergenic Intergenic 59078 ENSMUSG00000025856.15 ENSMUSG00000025856 ENSMUST00000132051 Pdgfa protein_coding Interval_74946 chr17 57698596 57699256 + 0 NA Intergenic Intergenic -42873 ENSMUSG00000117082.1 ENSMUSG00000117082 ENSMUST00000233731 Gm18139 processed_pseudogene Interval_30797 chr11 96518846 96519139 + 0 NA intron (ENSMUSG00000057058.16, intron 2 of 7) protein_coding-intron (ENSMUSG00000057058.16, intron 2 of 11) 35210 ENSMUSG00000057058.16 ENSMUSG00000057058 ENSMUST00000123814 Skap1 protein_coding Interval_107623 chr3 108945828 108946035 + 0 NA intron (ENSMUSG00000045662.17, intron 3 of 7) protein_coding-intron (ENSMUSG00000045662.17, intron 3 of 7) -5485 ENSMUSG00000051638.2 ENSMUSG00000051638 ENSMUST00000050914 Gm9857 antisense Interval_154213 chr8 13482698 13482889 + 0 NA intron (ENSMUSG00000031451.6, intron 4 of 14) protein_coding-intron (ENSMUSG00000031451.6, intron 4 of 14) 11697 ENSMUSG00000031451.6 ENSMUSG00000031451 ENSMUST00000033828 Gas6 protein_coding Interval_24112 chr11 30444012 30444859 + 0 NA intron (ENSMUSG00000040919.13, intron 4 of 5) protein_coding-intron (ENSMUSG00000040919.13, intron 3 of 4) 27392 ENSMUSG00000040919.13 ENSMUSG00000040919 ENSMUST00000152718 4930505A04Rik protein_coding Interval_150274 chr7 109190802 109192327 + 0 NA Intergenic Intergenic -21052 ENSMUSG00000036111.8 ENSMUSG00000036111 ENSMUST00000208136 Lmo1 protein_coding Interval_31117 chr11 98242577 98243869 + 0 NA intron (ENSMUSG00000003119.14, intron 1 of 7) protein_coding-intron (ENSMUSG00000003119.14, intron 11 of 12) 1486 ENSMUSG00000003119.14 ENSMUSG00000003119 ENSMUST00000125152 Cdk12 protein_coding Interval_126783 chr5 92915424 92915686 + 0 NA intron (ENSMUSG00000029381.16, intron 1 of 9) protein_coding-intron (ENSMUSG00000029381.16, intron 1 of 9) 59084 ENSMUSG00000029381.16 ENSMUSG00000029381 ENSMUST00000172752 Shroom3 protein_coding Interval_16718 chr10 67187036 67188038 + 0 NA exon (ENSMUSG00000037876.17, exon 1 of 1) protein_coding-exon (ENSMUSG00000037876.17, exon 1 of 1) 1789 ENSMUSG00000037876.17 ENSMUSG00000037876 ENSMUST00000173236 Jmjd1c protein_coding Interval_162754 chr9 8533614 8534030 + 0 NA Intergenic Intergenic -10374 ENSMUSG00000031997.9 ENSMUSG00000031997 ENSMUST00000214596 Trpc6 protein_coding Interval_156726 chr8 57630367 57630742 + 0 NA intron (ENSMUSG00000031608.13, intron 1 of 5) protein_coding-intron (ENSMUSG00000031608.13, intron 1 of 11) -3067 ENSMUSG00000109852.1 ENSMUSG00000109852 ENSMUST00000210698 Gm45360 TEC Interval_60166 chr15 66899430 66900133 + 0 NA intron (ENSMUSG00000005124.10, intron 1 of 4) protein_coding-intron (ENSMUSG00000005124.10, intron 1 of 4) -9483 ENSMUSG00000005124.10 ENSMUSG00000005124 ENSMUST00000133863 Ccn4 protein_coding Interval_55711 chr14 99228403 99229509 + 0 NA intron (ENSMUSG00000022064.10, intron 7 of 8) protein_coding-intron (ENSMUSG00000022064.10, intron 16 of 17) 62680 ENSMUSG00000100172.1 ENSMUSG00000100172 ENSMUST00000186660 Gm4412 processed_pseudogene Interval_106037 chr3 91059294 91059639 + 0 NA Intergenic Intergenic -12196 ENSMUSG00000086377.1 ENSMUSG00000086377 ENSMUST00000131367 4930529C04Rik processed_pseudogene Interval_171274 chr9 115908133 115908569 + 0 NA Intergenic Intergenic -28791 ENSMUSG00000056880.12 ENSMUSG00000056880 ENSMUST00000121770 Gadl1 protein_coding Interval_72576 chr17 30754736 30755058 + 0 NA intron (ENSMUSG00000033826.10, intron 54 of 90) protein_coding-intron (ENSMUSG00000033826.10, intron 56 of 92) 27232 ENSMUSG00000094785.1 ENSMUSG00000094785 ENSMUST00000083205 Gm24661 snRNA Interval_163248 chr9 19588787 19589221 + 0 NA Intergenic Intergenic 6387 ENSMUSG00000043087.5 ENSMUSG00000043087 ENSMUST00000061693 Olfr855 protein_coding Interval_71177 chr17 20879264 20879537 + 0 NA Intergenic Intergenic 25691 ENSMUSG00000050933.4 ENSMUSG00000050933 ENSMUST00000061278 Vmn1r231 protein_coding Interval_85519 chr19 27902692 27902873 + 0 NA intron (ENSMUSG00000040929.17, intron 1 of 16) protein_coding-intron (ENSMUSG00000040929.17, intron 1 of 15) 44724 ENSMUSG00000092617.1 ENSMUSG00000092617 ENSMUST00000077493 Gm8412 processed_pseudogene Interval_15637 chr10 52648485 52649442 + 0 NA Intergenic Intergenic -41570 ENSMUSG00000038602.7 ENSMUSG00000038602 ENSMUST00000105473 Slc35f1 protein_coding Interval_113496 chr4 55358975 55359884 + 0 NA intron (ENSMUSG00000028426.10, intron 1 of 1) protein_coding-intron (ENSMUSG00000028426.10, intron 1 of 9) 9339 ENSMUSG00000028426.10 ENSMUSG00000028426 ENSMUST00000156263 Rad23b protein_coding Interval_87435 chr19 50544609 50545084 + 0 NA intron (ENSMUSG00000043531.16, intron 1 of 25) protein_coding-intron (ENSMUSG00000043531.16, intron 2 of 26) -132560 ENSMUSG00000097446.1 ENSMUSG00000097446 ENSMUST00000180848 Gm26629 antisense Interval_131166 chr5 135544681 135546005 + 0 NA promoter-TSS (ENSMUSG00000039959.13) protein_coding-promoter-TSS (ENSMUSG00000039959.13) 18226 ENSMUSG00000070464.1 ENSMUSG00000070464 ENSMUST00000094226 Ccl26 protein_coding Interval_56146 chr14 107092636 107092967 + 0 NA Intergenic Intergenic 326771 ENSMUSG00000077224.1 ENSMUSG00000077224 ENSMUST00000104036 Gm23437 snoRNA Interval_173885 chrX 106987420 106988974 + 0 NA Intergenic Intergenic 67572 ENSMUSG00000049929.7 ENSMUSG00000049929 ENSMUST00000060576 Lpar4 protein_coding Interval_111415 chr4 21373941 21374765 + 0 NA Intergenic Intergenic 45833 ENSMUSG00000089322.1 ENSMUSG00000089322 ENSMUST00000158697 Gm25977 snoRNA Interval_116504 chr4 114821299 114822607 + 0 NA intron (ENSMUSG00000055198.3, intron 1 of 3) protein_coding-intron (ENSMUSG00000055198.3, intron 1 of 3) 231 ENSMUSG00000055198.3 ENSMUSG00000055198 ENSMUST00000137570 Gm12830 protein_coding Interval_44928 chr13 50119160 50120607 + 0 NA Intergenic Intergenic 1877 ENSMUSG00000095849.1 ENSMUSG00000095849 ENSMUST00000177809 Gm24300 miRNA Interval_144594 chr7 26705776 26707654 + 0 NA Intergenic Intergenic -20278 ENSMUSG00000040650.8 ENSMUSG00000040650 ENSMUST00000077356 Cyp2b23 protein_coding Interval_85878 chr19 32634722 32635766 + 0 NA intron (ENSMUSG00000024899.7, intron 2 of 11) protein_coding-intron (ENSMUSG00000024899.7, intron 2 of 12) 15239 ENSMUSG00000024899.7 ENSMUSG00000024899 ENSMUST00000025833 Papss2 protein_coding Interval_98465 chr2 152611973 152612813 + 0 NA intron (ENSMUSG00000044863.7, intron 1 of 1) protein_coding-intron (ENSMUSG00000044863.7, intron 1 of 1) 3219 ENSMUSG00000089684.1 ENSMUSG00000089684 ENSMUST00000117342 Gm14163 processed_pseudogene Interval_138848 chr6 92522664 92523074 + 0 NA intron (ENSMUSG00000030020.13, intron 2 of 8) protein_coding-intron (ENSMUSG00000030020.13, intron 2 of 8) -38908 ENSMUSG00000098130.1 ENSMUSG00000098130 ENSMUST00000182175 Gm17797 processed_pseudogene Interval_133790 chr6 12243703 12244561 + 0 NA Intergenic Intergenic 115506 ENSMUSG00000108209.1 ENSMUSG00000108209 ENSMUST00000203296 Gm32222 processed_pseudogene Interval_7995 chr1 135129381 135131602 + 0 NA intron (ENSMUSG00000097993.7, intron 1 of 36) polymorphic_pseudogene-intron (ENSMUSG00000097993.7, intron 1 of 4) 672 ENSMUSG00000097993.7 ENSMUSG00000097993 ENSMUST00000183212 Ptprv polymorphic_pseudogene Interval_150791 chr7 114635497 114636660 + 0 NA intron (ENSMUSG00000030669.13, intron 1 of 2) protein_coding-intron (ENSMUSG00000030669.13, intron 1 of 4) 217 ENSMUSG00000030669.13 ENSMUSG00000030669 ENSMUST00000205714 Calca protein_coding Interval_71169 chr17 20746932 20747141 + 0 NA Intergenic Intergenic 17193 ENSMUSG00000067951.5 ENSMUSG00000067951 ENSMUST00000088829 Vmn1r227 protein_coding Interval_133001 chr5 149202813 149204311 + 0 NA intron (ENSMUSG00000041264.16, intron 3 of 6) protein_coding-intron (ENSMUSG00000041264.16, intron 6 of 8) 14703 ENSMUSG00000041264.16 ENSMUSG00000041264 ENSMUST00000150921 Uspl1 protein_coding Interval_121174 chr4 153802082 153802484 + 0 NA Intergenic Intergenic -74101 ENSMUSG00000077519.1 ENSMUSG00000077519 ENSMUST00000104331 Gm25880 snoRNA Interval_1130 chr1 15892199 15893101 + 0 NA promoter-TSS (ENSMUSG00000032719.4) protein_coding-promoter-TSS (ENSMUSG00000032719.4) 72 ENSMUSG00000032719.4 ENSMUSG00000032719 ENSMUST00000040695 Sbspon protein_coding Interval_161151 chr8 117807842 117808194 + 0 NA Intergenic Intergenic 5956 ENSMUSG00000074065.4 ENSMUSG00000074065 ENSMUST00000098368 Gm10617 pseudogene Interval_51429 chr14 27435090 27437559 + 0 NA intron (ENSMUSG00000040651.9, intron 1 of 23) protein_coding-intron (ENSMUSG00000040651.9, intron 1 of 23) -40846 ENSMUSG00000040651.9 ENSMUSG00000040651 ENSMUST00000225139 Tasor protein_coding Interval_149062 chr7 92786200 92787727 + 0 NA intron (ENSMUSG00000030643.14, intron 1 of 3) protein_coding-intron (ENSMUSG00000030643.14, intron 1 of 4) 8458 ENSMUSG00000109257.1 ENSMUSG00000109257 ENSMUST00000207434 Gm45200 TEC Interval_171974 chr9 123100517 123100914 + 0 NA promoter-TSS (ENSMUSG00000025786.17) protein_coding-promoter-TSS (ENSMUSG00000025786.17) 12432 ENSMUSG00000025786.17 ENSMUSG00000025786 ENSMUST00000130717 Zdhhc3 protein_coding Interval_16148 chr10 61052036 61052812 + 0 NA promoter-TSS (ENSMUSG00000093573.1) lincRNA-promoter-TSS (ENSMUSG00000093573.1) -524 ENSMUSG00000093573.1 ENSMUSG00000093573 ENSMUST00000176406 Gm20610 lincRNA Interval_10043 chr1 165313524 165314260 + 0 NA intron (ENSMUSG00000040836.15, intron 3 of 5) protein_coding-intron (ENSMUSG00000040836.15, intron 3 of 5) 18103 ENSMUSG00000040836.15 ENSMUSG00000040836 ENSMUST00000111450 Gpr161 protein_coding Interval_56505 chr14 119369519 119370369 + 0 NA intron (ENSMUSG00000053465.6, intron 1 of 1) protein_coding-intron (ENSMUSG00000053465.6, intron 1 of 1) 91520 ENSMUSG00000115684.1 ENSMUSG00000115684 ENSMUST00000227446 Gm6087 processed_pseudogene Interval_154864 chr8 24484479 24485264 + 0 NA Intergenic Intergenic -21559 ENSMUSG00000109237.1 ENSMUSG00000109237 ENSMUST00000208727 9130214F15Rik TEC Interval_16034 chr10 60230255 60231439 + 0 NA Intergenic Intergenic -19596 ENSMUSG00000077090.1 ENSMUSG00000077090 ENSMUST00000103902 Gm22117 miRNA Interval_104450 chr3 65824919 65825614 + 0 NA intron (ENSMUSG00000074579.14, intron 12 of 12) protein_coding-intron (ENSMUSG00000074579.14, intron 12 of 12) 39563 ENSMUSG00000103440.1 ENSMUSG00000103440 ENSMUST00000192502 Gm37131 TEC Interval_60591 chr15 75548808 75549587 + 0 NA Intergenic Intergenic 17849 ENSMUSG00000022577.17 ENSMUSG00000022577 ENSMUST00000228961 Ly6h protein_coding Interval_58117 chr15 28060187 28061547 + 0 NA intron (ENSMUSG00000115773.1, intron 5 of 5) lincRNA-intron (ENSMUSG00000115773.1, intron 5 of 5) 19858 ENSMUSG00000115058.1 ENSMUSG00000115058 ENSMUST00000227963 Gm19883 processed_pseudogene Interval_149336 chr7 97520858 97521432 + 0 NA promoter-TSS (ENSMUSG00000065360.1) snoRNA-promoter-TSS (ENSMUSG00000065360.1) -663 ENSMUSG00000065360.1 ENSMUSG00000065360 ENSMUST00000083426 Gm24412 snoRNA Interval_77461 chr17 89091513 89092201 + 0 NA intron (ENSMUSG00000032937.5, intron 2 of 9) protein_coding-intron (ENSMUSG00000032937.5, intron 2 of 9) 108818 ENSMUSG00000032937.5 ENSMUSG00000032937 ENSMUST00000035701 Fshr protein_coding Interval_133994 chr6 17584069 17584287 + 0 NA Intergenic Intergenic 49177 ENSMUSG00000009376.15 ENSMUSG00000009376 ENSMUST00000148903 Met protein_coding Interval_89778 chr2 25389420 25390845 + 0 NA Intergenic Intergenic -5784 ENSMUSG00000015085.8 ENSMUSG00000015085 ENSMUST00000140590 Entpd2 protein_coding Interval_78586 chr18 14939695 14940256 + 0 NA Intergenic Intergenic -15864 ENSMUSG00000117436.1 ENSMUSG00000117436 ENSMUST00000234412 Gm9474 processed_pseudogene Interval_82750 chr18 76453297 76454200 + 0 NA Intergenic Intergenic 131924 ENSMUSG00000117816.1 ENSMUSG00000117816 ENSMUST00000235901 Gm50360 processed_pseudogene Interval_5808 chr1 92063999 92064673 + 0 NA intron (ENSMUSG00000026313.16, intron 3 of 4) protein_coding-intron (ENSMUSG00000026313.16, intron 1 of 25) -42239 ENSMUSG00000102565.1 ENSMUSG00000102565 ENSMUST00000192836 Gm37036 TEC Interval_139062 chr6 94691988 94692260 + 0 NA intron (ENSMUSG00000030029.14, intron 1 of 19) protein_coding-intron (ENSMUSG00000030029.14, intron 1 of 19) 8034 ENSMUSG00000030029.14 ENSMUSG00000030029 ENSMUST00000124165 Lrig1 protein_coding Interval_77945 chr18 5980543 5981201 + 0 NA Intergenic Intergenic 34149 ENSMUSG00000117548.1 ENSMUSG00000117548 ENSMUST00000234469 Gm41662 TEC Interval_138350 chr6 87513100 87514171 + 0 NA intron (ENSMUSG00000030047.14, intron 1 of 10) protein_coding-intron (ENSMUSG00000030047.14, intron 1 of 9) -19772 ENSMUSG00000108184.1 ENSMUSG00000108184 ENSMUST00000203063 Gm44198 TEC Interval_59904 chr15 61439508 61440337 + 0 NA Intergenic Intergenic -81918 ENSMUSG00000065812.1 ENSMUSG00000065812 ENSMUST00000083878 Gm24696 snoRNA Interval_153472 chr7 145030647 145031308 + 0 NA Intergenic Intergenic -91052 ENSMUSG00000070348.5 ENSMUSG00000070348 ENSMUST00000135985 Ccnd1 protein_coding Interval_152726 chr7 136930458 136930785 + 0 NA intron (ENSMUSG00000054612.4, intron 1 of 4) protein_coding-intron (ENSMUSG00000054612.4, intron 1 of 4) 9680 ENSMUSG00000109721.1 ENSMUSG00000109721 ENSMUST00000210484 Gm45280 TEC Interval_33677 chr11 117873063 117873696 + 0 NA promoter-TSS (ENSMUSG00000017713.9) protein_coding-promoter-TSS (ENSMUSG00000017713.9) 102 ENSMUSG00000017713.9 ENSMUSG00000017713 ENSMUST00000138354 Tha1 protein_coding Interval_108455 chr3 127387223 127387769 + 0 NA intron (ENSMUSG00000032826.19, intron 1 of 1) protein_coding-intron (ENSMUSG00000032826.19, intron 1 of 14) 6210 ENSMUSG00000105822.1 ENSMUSG00000105822 ENSMUST00000199858 Gm42969 TEC Interval_2690 chr1 43470490 43470963 + 0 NA intron (ENSMUSG00000066877.11, intron 1 of 4) protein_coding-intron (ENSMUSG00000066877.11, intron 1 of 4) -17721 ENSMUSG00000103422.1 ENSMUSG00000103422 ENSMUST00000194710 Gm37536 TEC Interval_133770 chr6 11947948 11948868 + 0 NA intron (ENSMUSG00000029629.17, intron 3 of 3) protein_coding-intron (ENSMUSG00000029629.17, intron 4 of 15) -40925 ENSMUSG00000029632.7 ENSMUSG00000029632 ENSMUST00000204714 Ndufa4 protein_coding Interval_123373 chr5 31984242 31984608 + 0 NA intron (ENSMUSG00000052139.18, intron 5 of 6) protein_coding-intron (ENSMUSG00000052139.18, intron 9 of 13) 26438 ENSMUSG00000106894.1 ENSMUSG00000106894 ENSMUST00000201542 Gm17130 antisense Interval_63536 chr15 101858839 101860343 + 0 NA exon (ENSMUSG00000067594.6, exon 9 of 9) protein_coding-exon (ENSMUSG00000067594.6, exon 9 of 9) 10005 ENSMUSG00000067594.6 ENSMUSG00000067594 ENSMUST00000229995 Krt77 protein_coding Interval_11136 chr1 179578412 179580018 + 0 NA intron (ENSMUSG00000038949.8, intron 1 of 3) protein_coding-intron (ENSMUSG00000038949.8, intron 1 of 10) 32706 ENSMUSG00000038949.8 ENSMUSG00000038949 ENSMUST00000143270 Cnst protein_coding Interval_45683 chr13 56887295 56888024 + 0 NA exon (ENSMUSG00000021541.14, exon 2 of 12) protein_coding-exon (ENSMUSG00000021541.14, exon 2 of 12) 8078 ENSMUSG00000021541.14 ENSMUSG00000021541 ENSMUST00000173817 Trpc7 protein_coding Interval_85323 chr19 24701376 24701600 + 0 NA intron (ENSMUSG00000041731.13, intron 5 of 5) protein_coding-intron (ENSMUSG00000041731.13, intron 10 of 10) -8118 ENSMUSG00000097950.1 ENSMUSG00000097950 ENSMUST00000182466 Gm17800 processed_pseudogene Interval_133229 chr5 150717740 150718051 + 0 NA intron (ENSMUSG00000034021.15, intron 2 of 34) protein_coding-intron (ENSMUSG00000034021.15, intron 2 of 34) -6931 ENSMUSG00000077592.1 ENSMUSG00000077592 ENSMUST00000104404 Gm26013 snoRNA Interval_107873 chr3 116487050 116488537 + 0 NA Intergenic Intergenic 20272 ENSMUSG00000000339.14 ENSMUSG00000000339 ENSMUST00000143425 Rtca protein_coding Interval_147571 chr7 68328275 68328537 + 0 NA intron (ENSMUSG00000074071.11, intron 3 of 4) protein_coding-intron (ENSMUSG00000074071.11, intron 4 of 8) -4583 ENSMUSG00000109096.1 ENSMUSG00000109096 ENSMUST00000209119 Gm44888 TEC Interval_125275 chr5 65842106 65842421 + 0 NA Intergenic Intergenic -11069 ENSMUSG00000106713.1 ENSMUSG00000106713 ENSMUST00000201573 Gm42645 TEC Interval_30372 chr11 93939349 93939756 + 0 NA intron (ENSMUSG00000059474.13, intron 15 of 15) protein_coding-intron (ENSMUSG00000059474.13, intron 17 of 17) 14012 ENSMUSG00000059474.13 ENSMUSG00000059474 ENSMUST00000155841 Mbtd1 protein_coding Interval_16186 chr10 61315029 61316323 + 0 NA Intergenic Intergenic 5846 ENSMUSG00000061488.5 ENSMUSG00000061488 ENSMUST00000075382 Rpl27a-ps1 processed_pseudogene Interval_15064 chr10 42291202 42292058 + 0 NA Intergenic Intergenic -18145 ENSMUSG00000088165.1 ENSMUSG00000088165 ENSMUST00000157540 Gm23533 misc_RNA Interval_27212 chr11 64141917 64142448 + 0 NA Intergenic Intergenic -22391 ENSMUSG00000087622.1 ENSMUSG00000087622 ENSMUST00000145095 Gm12290 lincRNA Interval_78931 chr18 22017695 22017978 + 0 NA intron (ENSMUSG00000024306.13, intron 20 of 23) protein_coding-intron (ENSMUSG00000024306.13, intron 19 of 22) 153606 ENSMUSG00000024306.13 ENSMUSG00000024306 ENSMUST00000234661 Ccdc178 protein_coding Interval_19676 chr10 107747588 107747800 + 0 NA Intergenic Intergenic -27667 ENSMUSG00000035916.8 ENSMUSG00000035916 ENSMUST00000218399 Ptprq protein_coding Interval_40804 chr12 108515529 108516615 + 0 NA intron (ENSMUSG00000058070.14, intron 10 of 18) protein_coding-intron (ENSMUSG00000058070.14, intron 12 of 21) 39392 ENSMUSG00000097788.2 ENSMUSG00000097788 ENSMUST00000220796 Gm16596 antisense Interval_118278 chr4 130005124 130007403 + 0 NA intron (ENSMUSG00000028782.14, intron 4 of 27) protein_coding-intron (ENSMUSG00000028782.14, intron 3 of 28) -5938 ENSMUSG00000028782.14 ENSMUSG00000028782 ENSMUST00000136787 Adgrb2 protein_coding Interval_71397 chr17 23359614 23359810 + 0 NA exon (ENSMUSG00000091076.2, exon 6 of 6) protein_coding-exon (ENSMUSG00000091076.2, exon 6 of 6) 15971 ENSMUSG00000091076.2 ENSMUSG00000091076 ENSMUST00000234552 Vmn2r115 protein_coding Interval_29246 chr11 82205953 82206136 + 0 NA intron (ENSMUSG00000020702.13, intron 7 of 10) protein_coding-intron (ENSMUSG00000020702.13, intron 7 of 10) 90859 ENSMUSG00000009185.2 ENSMUSG00000009185 ENSMUST00000009329 Ccl8 protein_coding Interval_147319 chr7 65813606 65814431 + 0 NA Intergenic Intergenic 10907 ENSMUSG00000100094.1 ENSMUSG00000100094 ENSMUST00000185464 1810008I18Rik lincRNA Interval_26463 chr11 57998024 57999373 + 0 NA Intergenic Intergenic -10366 ENSMUSG00000037331.15 ENSMUSG00000037331 ENSMUST00000140500 Larp1 protein_coding Interval_163764 chr9 25440695 25441011 + 0 NA Intergenic Intergenic -9609 ENSMUSG00000111600.1 ENSMUSG00000111600 ENSMUST00000214336 Gm8049 processed_pseudogene Interval_40449 chr12 104947593 104949050 + 0 NA intron (ENSMUSG00000054150.12, intron 11 of 17) protein_coding-intron (ENSMUSG00000054150.12, intron 10 of 16) -21632 ENSMUSG00000100975.2 ENSMUSG00000100975 ENSMUST00000185486 Gm28875 lincRNA Interval_21046 chr10 125228350 125228610 + 0 NA intron (ENSMUSG00000020102.15, intron 5 of 5) protein_coding-intron (ENSMUSG00000020102.15, intron 6 of 6) -80432 ENSMUSG00000109803.1 ENSMUSG00000109803 ENSMUST00000209665 Gm45604 antisense Interval_61149 chr15 79499952 79500463 + 0 NA intron (ENSMUSG00000044216.7, intron 1 of 1) protein_coding-intron (ENSMUSG00000044216.7, intron 1 of 1) 5034 ENSMUSG00000044216.7 ENSMUSG00000044216 ENSMUST00000057801 Kcnj4 protein_coding Interval_106403 chr3 95958753 95960096 + 0 NA Intergenic Intergenic 4964 ENSMUSG00000106640.1 ENSMUSG00000106640 ENSMUST00000197308 Gm20940 processed_pseudogene Interval_83024 chr18 80566909 80568309 + 0 NA Intergenic Intergenic -23594 ENSMUSG00000118319.1 ENSMUSG00000118319 ENSMUST00000237325 Gm2176 transcribed_processed_pseudogene Interval_58421 chr15 34378654 34379302 + 0 NA intron (ENSMUSG00000022324.15, intron 5 of 13) protein_coding-intron (ENSMUSG00000022324.15, intron 5 of 18) -21106 ENSMUSG00000094447.2 ENSMUSG00000094447 ENSMUST00000179647 9430069I07Rik protein_coding Interval_105483 chr3 86934810 86936417 + 0 NA Intergenic Intergenic -1950 ENSMUSG00000103650.1 ENSMUSG00000103650 ENSMUST00000194284 Gm37207 processed_pseudogene Interval_68304 chr16 72893792 72894720 + 0 NA intron (ENSMUSG00000022883.11, intron 2 of 28) protein_coding-intron (ENSMUSG00000022883.11, intron 2 of 28) -82093 ENSMUSG00000022883.11 ENSMUSG00000022883 ENSMUST00000232432 Robo1 protein_coding Interval_12514 chr1 194721470 194721704 + 0 NA intron (ENSMUSG00000026640.12, intron 4 of 31) protein_coding-intron (ENSMUSG00000026640.12, intron 4 of 31) -11120 ENSMUSG00000103776.1 ENSMUSG00000103776 ENSMUST00000194966 2900035J10Rik TEC Interval_101733 chr3 9261476 9262801 + 0 NA intron (ENSMUSG00000069114.8, intron 1 of 5) protein_coding-intron (ENSMUSG00000069114.8, intron 1 of 5) 11536 ENSMUSG00000069114.8 ENSMUSG00000069114 ENSMUST00000155203 Zbtb10 protein_coding Interval_147855 chr7 74348507 74349172 + 0 NA intron (ENSMUSG00000025790.14, intron 2 of 2) protein_coding-intron (ENSMUSG00000025790.14, intron 3 of 9) -1608 ENSMUSG00000025790.14 ENSMUSG00000025790 ENSMUST00000129292 Slco3a1 protein_coding Interval_51102 chr14 23121714 23122565 + 0 NA Intergenic Intergenic -27568 ENSMUSG00000068680.1 ENSMUSG00000068680 ENSMUST00000090409 Gm10248 antisense Interval_123149 chr5 30125541 30126036 + 0 NA TTS (ENSMUSG00000025745.12) protein_coding-TTS (ENSMUSG00000025745.12) -19702 ENSMUSG00000086815.4 ENSMUSG00000086815 ENSMUST00000127749 3110082J24Rik protein_coding Interval_32436 chr11 107531426 107532573 + 0 NA TTS (ENSMUSG00000083996.1) transcribed_processed_pseudogene-TTS (ENSMUSG00000083996.1) 306 ENSMUSG00000083996.1 ENSMUSG00000083996 ENSMUST00000118214 Gm11649 transcribed_processed_pseudogene Interval_66791 chr16 37655737 37656192 + 0 NA Intergenic Intergenic -1598 ENSMUSG00000022820.4 ENSMUSG00000022820 ENSMUST00000231881 Ndufb4 protein_coding Interval_88722 chr2 9992890 9993255 + 0 NA intron (ENSMUSG00000025782.12, intron 2 of 6) protein_coding-intron (ENSMUSG00000025782.12, intron 2 of 6) -51321 ENSMUSG00000025782.12 ENSMUSG00000025782 ENSMUST00000114907 Taf3 protein_coding Interval_59206 chr15 48188979 48190129 + 0 NA intron (ENSMUSG00000022311.15, intron 10 of 70) protein_coding-intron (ENSMUSG00000022311.15, intron 10 of 70) -361754 ENSMUSG00000065742.1 ENSMUSG00000065742 ENSMUST00000083808 Gm25007 snRNA Interval_2927 chr1 50963485 50963760 + 0 NA intron (ENSMUSG00000026109.14, intron 4 of 9) protein_coding-intron (ENSMUSG00000026109.14, intron 4 of 9) -51691 ENSMUSG00000092906.1 ENSMUSG00000092906 ENSMUST00000175165 Gm25736 miRNA Interval_33908 chr11 119350850 119351524 + 0 NA intron (ENSMUSG00000005043.13, intron 1 of 3) protein_coding-intron (ENSMUSG00000005043.13, intron 2 of 7) 1512 ENSMUSG00000005043.13 ENSMUSG00000005043 ENSMUST00000141540 Sgsh protein_coding Interval_79125 chr18 24765819 24766163 + 0 NA intron (ENSMUSG00000034295.10, intron 2 of 24) protein_coding-intron (ENSMUSG00000034295.10, intron 2 of 26) 4828 ENSMUSG00000088920.1 ENSMUSG00000088920 ENSMUST00000158295 Gm24294 misc_RNA Interval_173738 chrX 103321081 103322562 + 0 NA exon (ENSMUSG00000031326.2, exon 1 of 3) protein_coding-exon (ENSMUSG00000031326.2, exon 1 of 3) 423 ENSMUSG00000031326.2 ENSMUSG00000031326 ENSMUST00000033689 Cdx4 protein_coding Interval_157647 chr8 72004600 72005373 + 0 NA intron (ENSMUSG00000003484.4, intron 2 of 12) protein_coding-intron (ENSMUSG00000003484.4, intron 2 of 12) -12071 ENSMUSG00000003484.4 ENSMUSG00000003484 ENSMUST00000125448 Cyp4f18 protein_coding Interval_133054 chr5 149550643 149551860 + 0 NA intron (ENSMUSG00000029658.17, intron 3 of 22) protein_coding-intron (ENSMUSG00000029658.17, intron 3 of 22) -13221 ENSMUSG00000107132.1 ENSMUSG00000107132 ENSMUST00000202188 Gm15997 antisense Interval_124704 chr5 53443712 53443931 + 0 NA Intergenic Intergenic 25248 ENSMUSG00000088646.1 ENSMUSG00000088646 ENSMUST00000158021 Gm26486 rRNA Interval_110253 chr3 154918943 154919313 + 0 NA intron (ENSMUSG00000040086.13, intron 17 of 22) protein_coding-intron (ENSMUSG00000040086.13, intron 17 of 24) -2168 ENSMUSG00000102238.1 ENSMUSG00000102238 ENSMUST00000195610 Gm37890 TEC Interval_13901 chr10 24438889 24439339 + 0 NA Intergenic Intergenic -8376 ENSMUSG00000086148.1 ENSMUSG00000086148 ENSMUST00000134627 Gm15271 lincRNA Interval_28478 chr11 76260491 76260836 + 0 NA intron (ENSMUSG00000020844.6, intron 7 of 7) protein_coding-intron (ENSMUSG00000020844.6, intron 7 of 7) 11451 ENSMUSG00000038046.4 ENSMUSG00000038046 ENSMUST00000155526 Mrm3 protein_coding Interval_107563 chr3 108508618 108508839 + 0 NA intron (ENSMUSG00000040412.17, intron 1 of 1) protein_coding-intron (ENSMUSG00000040412.17, intron 1 of 20) 10610 ENSMUSG00000080673.1 ENSMUSG00000080673 ENSMUST00000117023 Gm23336 snRNA Interval_18862 chr10 91417527 91418253 + 0 NA Intergenic Intergenic -5464 ENSMUSG00000111591.1 ENSMUSG00000111591 ENSMUST00000215290 Gm47083 processed_pseudogene Interval_144363 chr7 24681971 24682932 + 0 NA Intergenic Intergenic -1855 ENSMUSG00000108768.1 ENSMUSG00000108768 ENSMUST00000206192 Gm44971 processed_pseudogene Interval_135109 chr6 35445827 35446950 + 0 NA Intergenic Intergenic 78250 ENSMUSG00000095986.1 ENSMUSG00000095986 ENSMUST00000175136 Gm23053 miRNA Interval_11220 chr1 180265086 180265683 + 0 NA intron (ENSMUSG00000102923.1, intron 2 of 2) antisense-intron (ENSMUSG00000102923.1, intron 2 of 2) 8955 ENSMUSG00000102923.1 ENSMUSG00000102923 ENSMUST00000192164 Gm31728 antisense Interval_82605 chr18 75396814 75398379 + 0 NA Intergenic Intergenic 28606 ENSMUSG00000025880.11 ENSMUSG00000025880 ENSMUST00000172718 Smad7 protein_coding Interval_101181 chr2 178968788 178969092 + 0 NA Intergenic Intergenic 52193 ENSMUSG00000082215.3 ENSMUSG00000082215 ENSMUST00000118225 Gm14314 processed_pseudogene Interval_30236 chr11 91387307 91387885 + 0 NA Intergenic Intergenic 189962 ENSMUSG00000046755.5 ENSMUSG00000046755 ENSMUST00000061019 Kif2b protein_coding Interval_6385 chr1 106713643 106715063 + 0 NA promoter-TSS (ENSMUSG00000057329.7) protein_coding-promoter-TSS (ENSMUSG00000057329.7) -1174 ENSMUSG00000057329.7 ENSMUSG00000057329 ENSMUST00000189999 Bcl2 protein_coding Interval_164861 chr9 42533151 42534365 + 0 NA intron (ENSMUSG00000032017.14, intron 19 of 20) protein_coding-intron (ENSMUSG00000032017.14, intron 17 of 18) -12927 ENSMUSG00000093745.1 ENSMUSG00000093745 ENSMUST00000176676 Gm24420 misc_RNA Interval_154536 chr8 19127582 19127823 + 0 NA Intergenic Intergenic 3950 ENSMUSG00000052554.3 ENSMUSG00000052554 ENSMUST00000064475 Defb34 protein_coding Interval_117381 chr4 123353334 123353640 + 0 NA intron (ENSMUSG00000028649.21, intron 92 of 93) protein_coding-intron (ENSMUSG00000028649.21, intron 91 of 92) -10684 ENSMUSG00000032726.12 ENSMUSG00000032726 ENSMUST00000040496 Bmp8a protein_coding Interval_77102 chr17 86588728 86588928 + 0 NA intron (ENSMUSG00000045038.14, intron 11 of 14) protein_coding-intron (ENSMUSG00000045038.14, intron 12 of 15) -83596 ENSMUSG00000071036.2 ENSMUSG00000071036 ENSMUST00000095186 Gm10309 protein_coding Interval_104717 chr3 69711129 69712500 + 0 NA Intergenic Intergenic 5579 ENSMUSG00000068969.3 ENSMUSG00000068969 ENSMUST00000091052 Rpl32-ps processed_pseudogene Interval_21875 chr11 4885578 4885784 + 0 NA intron (ENSMUSG00000034285.15, intron 4 of 6) protein_coding-intron (ENSMUSG00000034285.15, intron 4 of 9) 2475 ENSMUSG00000034285.15 ENSMUSG00000034285 ENSMUST00000141269 Nipsnap1 protein_coding Interval_31249 chr11 99120576 99121138 + 0 NA Intergenic Intergenic 34220 ENSMUSG00000037944.8 ENSMUSG00000037944 ENSMUST00000103134 Ccr7 protein_coding Interval_143880 chr7 16903716 16903978 + 0 NA Intergenic Intergenic -2667 ENSMUSG00000043017.9 ENSMUSG00000043017 ENSMUST00000144408 Ptgir protein_coding Interval_80585 chr18 44429547 44430141 + 0 NA exon (ENSMUSG00000071856.10, exon 19 of 19) protein_coding-exon (ENSMUSG00000071856.10, exon 19 of 19) 49342 ENSMUSG00000024472.9 ENSMUSG00000024472 ENSMUST00000025350 Dcp2 protein_coding Interval_109179 chr3 137658448 137659306 + 0 NA Intergenic Intergenic -12647 ENSMUSG00000094856.1 ENSMUSG00000094856 ENSMUST00000166899 Gm21962 protein_coding Interval_141201 chr6 125572468 125573677 + 0 NA intron (ENSMUSG00000001930.17, intron 6 of 14) protein_coding-intron (ENSMUSG00000001930.17, intron 7 of 10) 20109 ENSMUSG00000001930.17 ENSMUSG00000001930 ENSMUST00000146264 Vwf protein_coding Interval_167360 chr9 67787787 67788475 + 0 NA Intergenic Intergenic -27923 ENSMUSG00000055125.7 ENSMUSG00000055125 ENSMUST00000186205 M5C1000I18Rik lincRNA Interval_78291 chr18 11714131 11714584 + 0 NA intron (ENSMUSG00000041238.16, intron 6 of 17) protein_coding-intron (ENSMUSG00000041238.16, intron 7 of 18) 38198 ENSMUSG00000117589.1 ENSMUSG00000117589 ENSMUST00000234203 Gm18713 processed_pseudogene Interval_151826 chr7 126928460 126929623 + 0 NA promoter-TSS (ENSMUSG00000030685.5) protein_coding-promoter-TSS (ENSMUSG00000030685.5) -880 ENSMUSG00000030685.5 ENSMUSG00000030685 ENSMUST00000139233 Kctd13 protein_coding Interval_171180 chr9 115012318 115013717 + 0 NA intron (ENSMUSG00000040875.12, intron 1 of 4) protein_coding-intron (ENSMUSG00000040875.12, intron 1 of 11) 14401 ENSMUSG00000040875.12 ENSMUSG00000040875 ENSMUST00000182413 Osbpl10 protein_coding Interval_50004 chr13 119631491 119632382 + 0 NA intron (ENSMUSG00000074715.3, intron 1 of 2) protein_coding-intron (ENSMUSG00000074715.3, intron 1 of 2) -17580 ENSMUSG00000074715.3 ENSMUSG00000074715 ENSMUST00000225880 Ccl28 protein_coding Interval_15544 chr10 51153499 51153814 + 0 NA Intergenic Intergenic -28643 ENSMUSG00000084449.1 ENSMUSG00000084449 ENSMUST00000122500 Gm26257 snRNA Interval_130850 chr5 132590724 132591385 + 0 NA Intergenic Intergenic 44998 ENSMUSG00000105809.1 ENSMUSG00000105809 ENSMUST00000196866 Gm42626 lincRNA Interval_151105 chr7 118571588 118572397 + 0 NA intron (ENSMUSG00000042246.5, intron 2 of 2) protein_coding-intron (ENSMUSG00000042246.5, intron 1 of 15) 12694 ENSMUSG00000042246.5 ENSMUSG00000042246 ENSMUST00000139693 Tmc7 protein_coding Interval_51314 chr14 26340665 26341610 + 0 NA Intergenic Intergenic -16183 ENSMUSG00000114753.1 ENSMUSG00000114753 ENSMUST00000225697 Gm34059 lincRNA Interval_90478 chr2 30707464 30709467 + 0 NA Intergenic Intergenic 11592 ENSMUSG00000075416.5 ENSMUSG00000075416 ENSMUST00000131207 Gm14488 processed_transcript Interval_169066 chr9 91401203 91402104 + 0 NA Intergenic Intergenic -2821 ENSMUSG00000100341.1 ENSMUSG00000100341 ENSMUST00000191272 Gm29478 lincRNA Interval_69624 chr16 94694496 94695219 + 0 NA exon (ENSMUSG00000022897.15, exon 12 of 12) protein_coding-exon (ENSMUSG00000022897.15, exon 12 of 12) 19046 ENSMUSG00000116822.1 ENSMUSG00000116822 ENSMUST00000232250 Gm41504 TEC Interval_3038 chr1 52499679 52500994 + 0 NA promoter-TSS (ENSMUSG00000002881.14) protein_coding-promoter-TSS (ENSMUSG00000002881.14) -36 ENSMUSG00000002881.14 ENSMUSG00000002881 ENSMUST00000168082 Nab1 protein_coding Interval_138491 chr6 88639568 88640889 + 0 NA Intergenic Intergenic -21706 ENSMUSG00000033182.12 ENSMUSG00000033182 ENSMUST00000184664 Kbtbd12 protein_coding Interval_30158 chr11 89996049 89996681 + 0 NA intron (ENSMUSG00000020553.8, intron 1 of 5) protein_coding-intron (ENSMUSG00000020553.8, intron 1 of 5) 6529 ENSMUSG00000020553.8 ENSMUSG00000020553 ENSMUST00000020864 Pctp protein_coding Interval_25927 chr11 52647976 52649140 + 0 NA Intergenic Intergenic -116076 ENSMUSG00000036264.9 ENSMUSG00000036264 ENSMUST00000036796 Fstl4 protein_coding Interval_104837 chr3 75700049 75700432 + 0 NA promoter-TSS (ENSMUSG00000102188.1) TEC-promoter-TSS (ENSMUSG00000102188.1) -776 ENSMUSG00000102188.1 ENSMUSG00000102188 ENSMUST00000193087 Gm37193 TEC Interval_62297 chr15 89532328 89533544 + 0 NA promoter-TSS (ENSMUSG00000022623.17) protein_coding-promoter-TSS (ENSMUSG00000022623.17) -9259 ENSMUSG00000086602.1 ENSMUSG00000086602 ENSMUST00000155610 Gm15609 lincRNA Interval_165666 chr9 50790248 50790443 + 0 NA TTS (ENSMUSG00000032059.13) protein_coding-TTS (ENSMUSG00000032059.13) -11724 ENSMUSG00000032059.13 ENSMUSG00000032059 ENSMUST00000162596 Alg9 protein_coding Interval_153690 chr8 4629420 4629620 + 0 NA TTS (ENSMUSG00000058748.9) protein_coding-TTS (ENSMUSG00000058748.9) -11946 ENSMUSG00000109489.1 ENSMUSG00000109489 ENSMUST00000208382 Gm7451 processed_pseudogene Interval_163553 chr9 22054331 22055247 + 0 NA TTS (ENSMUSG00000038895.16) protein_coding-TTS (ENSMUSG00000038895.16) -2766 ENSMUSG00000003410.8 ENSMUSG00000003410 ENSMUST00000215901 Elavl3 protein_coding Interval_57363 chr15 9838335 9838661 + 0 NA Intergenic Intergenic -89660 ENSMUSG00000072663.12 ENSMUSG00000072663 ENSMUST00000159368 Spef2 protein_coding Interval_35900 chr12 31733735 31735098 + 0 NA intron (ENSMUSG00000035933.5, intron 6 of 22) protein_coding-intron (ENSMUSG00000035933.5, intron 6 of 22) -12909 ENSMUSG00000112033.1 ENSMUSG00000112033 ENSMUST00000218894 Gm48808 processed_pseudogene Interval_46212 chr13 62558189 62559459 + 0 NA promoter-TSS (ENSMUSG00000055228.8) protein_coding-promoter-TSS (ENSMUSG00000055228.8) -229 ENSMUSG00000074865.11 ENSMUSG00000074865 ENSMUST00000221279 Zfp934 protein_coding Interval_15902 chr10 59100320 59100848 + 0 NA intron (ENSMUSG00000037990.18, intron 7 of 9) protein_coding-intron (ENSMUSG00000037990.18, intron 5 of 5) -95115 ENSMUSG00000088744.1 ENSMUSG00000088744 ENSMUST00000158119 Gm23223 snoRNA Interval_124824 chr5 55761863 55762323 + 0 NA Intergenic Intergenic 30794 ENSMUSG00000105678.1 ENSMUSG00000105678 ENSMUST00000195958 Gm43705 TEC Interval_80288 chr18 38845562 38846221 + 0 NA TTS (ENSMUSG00000036585.16) protein_coding-TTS (ENSMUSG00000036585.16) 21112 ENSMUSG00000036585.16 ENSMUSG00000036585 ENSMUST00000134864 Fgf1 protein_coding Interval_1566 chr1 26407175 26407535 + 0 NA Intergenic Intergenic -58881 ENSMUSG00000099458.1 ENSMUSG00000099458 ENSMUST00000190716 Gm19123 processed_pseudogene Interval_100701 chr2 171799580 171800381 + 0 NA Intergenic Intergenic 162151 ENSMUSG00000086823.7 ENSMUSG00000086823 ENSMUST00000125465 1700028P15Rik processed_transcript Interval_92810 chr2 65792708 65793874 + 0 NA Intergenic Intergenic -31094 ENSMUSG00000118566.1 ENSMUSG00000118566 ENSMUST00000238931 BX284648.1 unprocessed_pseudogene Interval_85303 chr19 24527711 24527916 + 0 NA intron (ENSMUSG00000024867.14, intron 1 of 3) protein_coding-intron (ENSMUSG00000024867.14, intron 1 of 14) 28025 ENSMUSG00000024867.14 ENSMUSG00000024867 ENSMUST00000145829 Pip5k1b protein_coding Interval_50668 chr14 17907429 17907763 + 0 NA intron (ENSMUSG00000021779.17, intron 2 of 9) protein_coding-intron (ENSMUSG00000021779.17, intron 2 of 9) -22463 ENSMUSG00000084722.1 ENSMUSG00000084722 ENSMUST00000122773 Gm24140 misc_RNA Interval_132457 chr5 145069671 145069959 + 0 NA intron (ENSMUSG00000038770.17, intron 4 of 7) protein_coding-intron (ENSMUSG00000038770.17, intron 4 of 7) 2298 ENSMUSG00000118480.1 ENSMUSG00000118480 ENSMUST00000238523 Gm50458 unitary_pseudogene Interval_105826 chr3 89553110 89554724 + 0 NA intron (ENSMUSG00000000794.9, intron 1 of 7) protein_coding-intron (ENSMUSG00000000794.9, intron 1 of 7) 99376 ENSMUSG00000027952.16 ENSMUSG00000027952 ENSMUST00000184515 Pmvk protein_coding Interval_92318 chr2 58699866 58700626 + 0 NA intron (ENSMUSG00000026839.17, intron 1 of 7) protein_coding-intron (ENSMUSG00000026839.17, intron 1 of 7) -5523 ENSMUSG00000086129.1 ENSMUSG00000086129 ENSMUST00000140464 Gm13558 sense_intronic Interval_105653 chr3 88381557 88382910 + 0 NA exon (ENSMUSG00000078691.3, exon 2 of 3) unprocessed_pseudogene-exon (ENSMUSG00000078691.3, exon 2 of 3) 461 ENSMUSG00000078691.3 ENSMUSG00000078691 ENSMUST00000107540 Gm6821 unprocessed_pseudogene Interval_143701 chr7 15815698 15816213 + 0 NA Intergenic Intergenic 9860 ENSMUSG00000092576.3 ENSMUSG00000092576 ENSMUST00000173825 Obox4-ps35 lincRNA Interval_85468 chr19 26799827 26800044 + 0 NA intron (ENSMUSG00000093772.1, intron 1 of 3) antisense-intron (ENSMUSG00000093772.1, intron 1 of 3) -2140 ENSMUSG00000118331.1 ENSMUSG00000118331 ENSMUST00000237538 Gm18380 processed_pseudogene Interval_128465 chr5 113467563 113469121 + 0 NA Intergenic Intergenic -110446 ENSMUSG00000063430.9 ENSMUSG00000063430 ENSMUST00000198673 Wscd2 protein_coding Interval_46229 chr13 62788733 62788996 + 0 NA Intergenic Intergenic -2643 ENSMUSG00000095825.1 ENSMUSG00000095825 ENSMUST00000180065 Gm25448 snRNA Interval_151646 chr7 125669106 125669548 + 0 NA promoter-TSS (ENSMUSG00000032777.9) protein_coding-promoter-TSS (ENSMUSG00000032777.9) -335 ENSMUSG00000032777.9 ENSMUSG00000032777 ENSMUST00000206127 Gtf3c1 protein_coding Interval_112129 chr4 34870926 34871410 + 0 NA intron (ENSMUSG00000039967.14, intron 1 of 7) protein_coding-intron (ENSMUSG00000039967.14, intron 1 of 7) 11762 ENSMUSG00000039967.14 ENSMUSG00000039967 ENSMUST00000047950 Zfp292 protein_coding Interval_93890 chr2 78048113 78049873 + 0 NA Intergenic Intergenic -2184 ENSMUSG00000085431.7 ENSMUSG00000085431 ENSMUST00000144728 4930440I19Rik lincRNA Interval_89999 chr2 27235677 27236117 + 0 NA intron (ENSMUSG00000009614.16, intron 6 of 20) protein_coding-intron (ENSMUSG00000009614.16, intron 6 of 20) -25960 ENSMUSG00000009614.16 ENSMUSG00000009614 ENSMUST00000129975 Sardh protein_coding Interval_67158 chr16 44016166 44016874 + 0 NA promoter-TSS (ENSMUSG00000036292.14) protein_coding-promoter-TSS (ENSMUSG00000036292.14) 2668 ENSMUSG00000093912.1 ENSMUSG00000093912 ENSMUST00000175563 Mir3470b miRNA Interval_118068 chr4 128751147 128751732 + 0 NA intron (ENSMUSG00000028796.17, intron 6 of 6) protein_coding-intron (ENSMUSG00000028796.17, intron 14 of 14) -3925 ENSMUSG00000028794.13 ENSMUSG00000028794 ENSMUST00000030585 A3galt2 protein_coding Interval_166841 chr9 63142227 63142806 + 0 NA intron (ENSMUSG00000022245.15, intron 3 of 8) protein_coding-intron (ENSMUSG00000022245.15, intron 3 of 8) 4495 ENSMUSG00000022245.15 ENSMUSG00000022245 ENSMUST00000055281 Skor1 protein_coding Interval_70889 chr17 15656873 15657769 + 0 NA Intergenic Intergenic 25533 ENSMUSG00000116924.1 ENSMUSG00000116924 ENSMUST00000231822 4933401D09Rik lincRNA Interval_63555 chr15 102016917 102018354 + 0 NA Intergenic Intergenic -10545 ENSMUSG00000023043.7 ENSMUSG00000023043 ENSMUST00000023803 Krt18 protein_coding Interval_77558 chr17 91558314 91558534 + 0 NA intron (ENSMUSG00000087425.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000087425.1, intron 1 of 1) 1297 ENSMUSG00000087425.1 ENSMUSG00000087425 ENSMUST00000141811 Gm15404 lincRNA Interval_121983 chr5 12994356 12995147 + 0 NA Intergenic Intergenic 48683 ENSMUSG00000096810.1 ENSMUSG00000096810 ENSMUST00000179228 Gm10481 processed_pseudogene Interval_63975 chr16 4948093 4948571 + 0 NA promoter-TSS (ENSMUSG00000022515.6) protein_coding-promoter-TSS (ENSMUSG00000022515.6) -595 ENSMUSG00000022515.6 ENSMUSG00000022515 ENSMUST00000229077 Anks3 protein_coding Interval_106246 chr3 94888647 94889034 + 0 NA Intergenic Intergenic -2885 ENSMUSG00000005779.12 ENSMUSG00000005779 ENSMUST00000200513 Psmb4 protein_coding Interval_62688 chr15 96269989 96270810 + 0 NA intron (ENSMUSG00000097536.2, intron 1 of 6) lincRNA-intron (ENSMUSG00000097536.2, intron 1 of 6) 14096 ENSMUSG00000097536.2 ENSMUSG00000097536 ENSMUST00000185067 2610037D02Rik lincRNA Interval_123795 chr5 35563245 35564221 + 0 NA intron (ENSMUSG00000029097.11, intron 9 of 10) protein_coding-intron (ENSMUSG00000029097.11, intron 9 of 10) 9549 ENSMUSG00000083907.2 ENSMUSG00000083907 ENSMUST00000119494 Plk-ps1 processed_pseudogene Interval_161164 chr8 117943852 117944250 + 0 NA Intergenic Intergenic 141989 ENSMUSG00000074065.4 ENSMUSG00000074065 ENSMUST00000098368 Gm10617 pseudogene Interval_23153 chr11 20200619 20202007 + 0 NA promoter-TSS (ENSMUSG00000020149.17) protein_coding-promoter-TSS (ENSMUSG00000020149.17) -289 ENSMUSG00000020149.17 ENSMUSG00000020149 ENSMUST00000152728 Rab1a protein_coding Interval_35107 chr12 17355703 17355976 + 0 NA TTS (ENSMUSG00000093037.1) miRNA-TTS (ENSMUSG00000093037.1) 447 ENSMUSG00000093037.1 ENSMUSG00000093037 ENSMUST00000175296 Mir3066 miRNA Interval_148580 chr7 82808536 82809657 + 0 NA Intergenic Intergenic -42503 ENSMUSG00000030636.15 ENSMUSG00000030636 ENSMUST00000032872 1700010L04Rik lincRNA Interval_154267 chr8 13931856 13932850 + 0 NA TTS (ENSMUSG00000038365.8) protein_coding-TTS (ENSMUSG00000038365.8) 5374 ENSMUSG00000038365.8 ENSMUSG00000038365 ENSMUST00000209310 Fbxo25 protein_coding Interval_116539 chr4 115175961 115177200 + 0 NA intron (ENSMUSG00000082889.1, intron 1 of 1) unprocessed_pseudogene-intron (ENSMUSG00000082889.1, intron 1 of 1) 782 ENSMUSG00000082889.1 ENSMUSG00000082889 ENSMUST00000120882 Cyp4a29-ps1 unprocessed_pseudogene Interval_12608 chr10 3881190 3881529 + 0 NA intron (ENSMUSG00000040624.18, intron 2 of 15) protein_coding-intron (ENSMUSG00000040624.18, intron 2 of 15) -11752 ENSMUSG00000082123.1 ENSMUSG00000082123 ENSMUST00000117631 Gm16149 processed_pseudogene Interval_91105 chr2 35124713 35125570 + 0 NA intron (ENSMUSG00000057110.15, intron 7 of 42) protein_coding-intron (ENSMUSG00000057110.15, intron 7 of 10) -19955 ENSMUSG00000057110.15 ENSMUSG00000057110 ENSMUST00000143807 Cntrl protein_coding Interval_84250 chr19 9017864 9018173 + 0 NA exon (ENSMUSG00000069833.13, exon 5 of 5) protein_coding-exon (ENSMUSG00000069833.13, exon 5 of 5) 28734 ENSMUSG00000069833.13 ENSMUSG00000069833 ENSMUST00000237033 Ahnak protein_coding Interval_1001 chr1 13787847 13788285 + 0 NA Intergenic Intergenic -1187 ENSMUSG00000097711.1 ENSMUSG00000097711 ENSMUST00000180415 Gm5523 processed_pseudogene Interval_84676 chr19 14956538 14958029 + 0 NA Intergenic Intergenic 3483 ENSMUSG00000063586.1 ENSMUSG00000063586 ENSMUST00000072982 Gm5513 processed_pseudogene Interval_110840 chr4 8875504 8877128 + 0 NA Intergenic Intergenic 21085 ENSMUSG00000041235.12 ENSMUSG00000041235 ENSMUST00000222546 Chd7 protein_coding Interval_57924 chr15 25469026 25470229 + 0 NA Intergenic Intergenic -23987 ENSMUSG00000115850.1 ENSMUSG00000115850 ENSMUST00000226289 Gm48956 lincRNA Interval_115894 chr4 105941530 105942002 + 0 NA Intergenic Intergenic 34119 ENSMUSG00000089065.1 ENSMUSG00000089065 ENSMUST00000158440 Gm24363 misc_RNA Interval_68670 chr16 84327052 84327578 + 0 NA Intergenic Intergenic 32780 ENSMUSG00000095070.1 ENSMUSG00000095070 ENSMUST00000180104 Gm24508 snRNA Interval_50489 chr14 14019268 14020049 + 0 NA intron (ENSMUSG00000021738.5, intron 2 of 3) protein_coding-intron (ENSMUSG00000021738.5, intron 3 of 11) 6514 ENSMUSG00000021738.5 ENSMUSG00000021738 ENSMUST00000224315 Atxn7 protein_coding Interval_40237 chr12 102686546 102687306 + 0 NA intron (ENSMUSG00000096751.3, intron 2 of 2) protein_coding-intron (ENSMUSG00000057963.9, intron 1 of 9) -1906 ENSMUSG00000089324.1 ENSMUSG00000089324 ENSMUST00000158699 Mir1936 miRNA Interval_30616 chr11 95501248 95502349 + 0 NA Intergenic Intergenic 12772 ENSMUSG00000046719.7 ENSMUSG00000046719 ENSMUST00000058866 Nxph3 protein_coding Interval_40027 chr12 100573006 100573262 + 0 NA exon (ENSMUSG00000113687.1, exon 1 of 1) TEC-exon (ENSMUSG00000113687.1, exon 1 of 1) 842 ENSMUSG00000113687.1 ENSMUSG00000113687 ENSMUST00000223531 Gm49703 TEC Interval_32956 chr11 113355297 113356408 + 0 NA intron (ENSMUSG00000041654.15, intron 6 of 9) protein_coding-intron (ENSMUSG00000041654.15, intron 7 of 10) -112125 ENSMUSG00000078251.2 ENSMUSG00000078251 ENSMUST00000105048 Gm16487 pseudogene Interval_131657 chr5 139107684 139108256 + 0 NA TTS (ENSMUSG00000025855.13) protein_coding-TTS (ENSMUSG00000025855.13) 42031 ENSMUSG00000025855.13 ENSMUSG00000025855 ENSMUST00000130180 Prkar1b protein_coding Interval_45049 chr13 51732143 51732806 + 0 NA intron (ENSMUSG00000021451.16, intron 3 of 3) protein_coding-intron (ENSMUSG00000021451.16, intron 2 of 15) -32820 ENSMUSG00000092648.1 ENSMUSG00000092648 ENSMUST00000174907 Gm23566 miRNA Interval_30181 chr11 90237518 90239210 + 0 NA intron (ENSMUSG00000109967.1, intron 3 of 7) protein_coding-intron (ENSMUSG00000110344.1, intron 3 of 3) -11092 ENSMUSG00000003948.17 ENSMUSG00000003948 ENSMUST00000004050 Mmd protein_coding Interval_57461 chr15 11382692 11383580 + 0 NA TTS (ENSMUSG00000022241.6) protein_coding-TTS (ENSMUSG00000022241.6) 16465 ENSMUSG00000022241.6 ENSMUSG00000022241 ENSMUST00000226904 Tars protein_coding Interval_85611 chr19 29063781 29064905 + 0 NA Intergenic Intergenic -3004 ENSMUSG00000118038.1 ENSMUSG00000118038 ENSMUST00000235636 Gm9895 lincRNA Interval_63389 chr15 100767836 100768722 + 0 NA intron (ENSMUSG00000023032.12, intron 1 of 2) protein_coding-intron (ENSMUSG00000023032.12, intron 1 of 24) -34469 ENSMUSG00000023032.12 ENSMUSG00000023032 ENSMUST00000162744 Slc4a8 protein_coding Interval_38751 chr12 81915372 81915745 + 0 NA intron (ENSMUSG00000021140.9, intron 5 of 34) protein_coding-intron (ENSMUSG00000021140.9, intron 5 of 35) -57629 ENSMUSG00000021140.9 ENSMUSG00000021140 ENSMUST00000222468 Pcnx protein_coding Interval_35705 chr12 28431860 28432812 + 0 NA Intergenic Intergenic 82073 ENSMUSG00000077792.1 ENSMUSG00000077792 ENSMUST00000104604 Gm25564 snoRNA Interval_128291 chr5 112319105 112320116 + 0 NA Intergenic Intergenic -6811 ENSMUSG00000029345.13 ENSMUSG00000029345 ENSMUST00000126736 Tfip11 protein_coding Interval_170095 chr9 104402073 104403405 + 0 NA Intergenic Intergenic -23374 ENSMUSG00000089406.1 ENSMUSG00000089406 ENSMUST00000158781 Mir2136 miRNA Interval_3089 chr1 53149780 53150007 + 0 NA Intergenic Intergenic 37715 ENSMUSG00000060715.9 ENSMUSG00000060715 ENSMUST00000190748 1700019A02Rik protein_coding Interval_119808 chr4 140132018 140132405 + 0 NA intron (ENSMUSG00000085968.1, intron 1 of 1) protein_coding-intron (ENSMUSG00000040972.8, intron 2 of 9) 334 ENSMUSG00000085968.1 ENSMUSG00000085968 ENSMUST00000135858 Gm13027 antisense Interval_11277 chr1 180657574 180657881 + 0 NA intron (ENSMUSG00000058729.13, intron 4 of 14) protein_coding-intron (ENSMUSG00000058729.13, intron 4 of 11) -23160 ENSMUSG00000058729.13 ENSMUSG00000058729 ENSMUST00000194847 Lin9 protein_coding Interval_54131 chr14 65582362 65582813 + 0 NA intron (ENSMUSG00000022031.6, intron 4 of 14) protein_coding-intron (ENSMUSG00000022031.6, intron 4 of 14) 10465 ENSMUSG00000022031.6 ENSMUSG00000022031 ENSMUST00000224743 Elp3 protein_coding Interval_150638 chr7 113016550 113018101 + 0 NA Intergenic Intergenic 33422 ENSMUSG00000110207.1 ENSMUSG00000110207 ENSMUST00000210768 Gm33586 lincRNA Interval_145624 chr7 36294699 36294969 + 0 NA Intergenic Intergenic -7681 ENSMUSG00000093359.1 ENSMUSG00000093359 ENSMUST00000175618 Gm23292 miRNA Interval_123144 chr5 30092426 30093266 + 0 NA promoter-TSS (ENSMUSG00000104667.1) lincRNA-promoter-TSS (ENSMUSG00000104667.1) -94 ENSMUSG00000104667.1 ENSMUSG00000104667 ENSMUST00000197982 Gm4961 lincRNA Interval_21356 chr10 128132513 128134164 + 0 NA TTS (ENSMUSG00000040043.17) protein_coding-TTS (ENSMUSG00000040043.17) 41756 ENSMUSG00000040054.17 ENSMUSG00000040054 ENSMUST00000219980 Baz2a protein_coding Interval_103150 chr3 35972938 35974376 + 0 NA promoter-TSS (ENSMUSG00000106096.1) processed_pseudogene-promoter-TSS (ENSMUSG00000106096.1) -114 ENSMUSG00000106096.1 ENSMUSG00000106096 ENSMUST00000198634 B230207O21Rik processed_pseudogene Interval_129474 chr5 120435231 120437269 + 0 NA intron (ENSMUSG00000029595.9, intron 3 of 4) protein_coding-intron (ENSMUSG00000029595.9, intron 3 of 4) -4483 ENSMUSG00000098649.2 ENSMUSG00000098649 ENSMUST00000185026 Gm27199 antisense Interval_8527 chr1 140650521 140651007 + 0 NA intron (ENSMUSG00000102368.1, intron 1 of 3) antisense-intron (ENSMUSG00000102368.1, intron 1 of 3) 5640 ENSMUSG00000102368.1 ENSMUSG00000102368 ENSMUST00000193820 4930590L20Rik antisense Interval_13760 chr10 21877238 21877487 + 0 NA Intergenic Intergenic 1530 ENSMUSG00000080607.1 ENSMUSG00000080607 ENSMUST00000116957 Gm23839 snoRNA Interval_118505 chr4 132154882 132155899 + 0 NA Intergenic Intergenic -6506 ENSMUSG00000081394.1 ENSMUSG00000081394 ENSMUST00000117559 Gm13215 processed_pseudogene Interval_150655 chr7 113121728 113122365 + 0 NA intron (ENSMUSG00000110009.1, intron 2 of 5) lincRNA-intron (ENSMUSG00000110009.1, intron 2 of 4) 2348 ENSMUSG00000088671.1 ENSMUSG00000088671 ENSMUST00000158046 Gm23662 rRNA Interval_11428 chr1 181893697 181894178 + 0 NA Intergenic Intergenic -40748 ENSMUSG00000056699.7 ENSMUSG00000056699 ENSMUST00000070987 Gm5533 lincRNA Interval_104758 chr3 71064704 71065465 + 0 NA Intergenic Intergenic 336463 ENSMUSG00000102666.1 ENSMUSG00000102666 ENSMUST00000193033 Gm8599 processed_pseudogene Interval_60142 chr15 66294923 66295402 + 0 NA Intergenic Intergenic 8245 ENSMUSG00000099054.1 ENSMUSG00000099054 ENSMUST00000184211 Gm27242 lincRNA Interval_57613 chr15 12824224 12825538 + 0 NA promoter-TSS (ENSMUSG00000022195.7) protein_coding-promoter-TSS (ENSMUSG00000022195.7) 66 ENSMUSG00000022191.16 ENSMUSG00000022191 ENSMUST00000141010 Drosha protein_coding Interval_31469 chr11 100850038 100851339 + 0 NA promoter-TSS (ENSMUSG00000020919.11) protein_coding-promoter-TSS (ENSMUSG00000020919.11) -150 ENSMUSG00000020919.11 ENSMUSG00000020919 ENSMUST00000126266 Stat5b protein_coding Interval_132632 chr5 146857289 146857588 + 0 NA Intergenic Intergenic 11673 ENSMUSG00000029641.8 ENSMUSG00000029641 ENSMUST00000198570 Rasl11a protein_coding Interval_102375 chr3 22460384 22460997 + 0 NA Intergenic Intergenic -50639 ENSMUSG00000088846.1 ENSMUSG00000088846 ENSMUST00000158221 Gm26354 snoRNA Interval_149850 chr7 101984919 101986610 + 0 NA intron (ENSMUSG00000066306.13, intron 2 of 8) protein_coding-intron (ENSMUSG00000066306.13, intron 2 of 24) -5504 ENSMUSG00000110287.1 ENSMUSG00000110287 ENSMUST00000210584 Gm45313 processed_pseudogene Interval_76426 chr17 80121323 80121721 + 0 NA Intergenic Intergenic 16585 ENSMUSG00000088276.1 ENSMUSG00000088276 ENSMUST00000157651 Gm23125 snRNA Interval_116923 chr4 118248589 118249531 + 0 NA intron (ENSMUSG00000033295.14, intron 6 of 32) protein_coding-intron (ENSMUSG00000033295.14, intron 6 of 32) -38496 ENSMUSG00000098596.1 ENSMUSG00000098596 ENSMUST00000184953 Mir7226 miRNA Interval_4636 chr1 75582733 75583402 + 0 NA Intergenic Intergenic 14984 ENSMUSG00000083244.1 ENSMUSG00000083244 ENSMUST00000117745 Gm15180 processed_pseudogene Interval_41280 chr12 112381363 112381564 + 0 NA Intergenic Intergenic 24331 ENSMUSG00000113120.1 ENSMUSG00000113120 ENSMUST00000221094 E330035G20Rik lincRNA Interval_13401 chr10 17795690 17797938 + 0 NA intron (ENSMUSG00000039891.6, intron 1 of 2) protein_coding-intron (ENSMUSG00000039891.6, intron 1 of 9) 588 ENSMUSG00000039891.6 ENSMUSG00000039891 ENSMUST00000037964 Txlnb protein_coding Interval_151242 chr7 120101154 120103442 + 0 NA promoter-TSS (ENSMUSG00000030917.13) protein_coding-promoter-TSS (ENSMUSG00000030917.13) -597 ENSMUSG00000030917.13 ENSMUSG00000030917 ENSMUST00000208968 Tmem159 protein_coding Interval_123959 chr5 36877963 36878440 + 0 NA intron (ENSMUSG00000029120.10, intron 1 of 3) protein_coding-intron (ENSMUSG00000029120.10, intron 1 of 8) -1322 ENSMUSG00000087487.1 ENSMUSG00000087487 ENSMUST00000152862 Ppp2r2cos antisense Interval_53960 chr14 63836700 63837489 + 0 NA Intergenic Intergenic -62675 ENSMUSG00000021958.5 ENSMUSG00000021958 ENSMUST00000225564 Pinx1 protein_coding Interval_41279 chr12 112377048 112377317 + 0 NA Intergenic Intergenic -27115 ENSMUSG00000103080.1 ENSMUSG00000103080 ENSMUST00000194990 Gm38123 TEC Interval_17555 chr10 77724844 77725397 + 0 NA intron (ENSMUSG00000069581.12, intron 1 of 11) protein_coding-intron (ENSMUSG00000069581.12, intron 1 of 11) -1366 ENSMUSG00000096421.1 ENSMUSG00000096421 ENSMUST00000179726 Gm10100 protein_coding Interval_106574 chr3 97376490 97376906 + 0 NA Intergenic Intergenic 45322 ENSMUSG00000051392.5 ENSMUSG00000051392 ENSMUST00000060912 Olfr1402 protein_coding Interval_64907 chr16 17123982 17125518 + 0 NA promoter-TSS (ENSMUSG00000065572.1) miRNA-promoter-TSS (ENSMUSG00000065572.1) -254 ENSMUSG00000076288.1 ENSMUSG00000076288 ENSMUST00000102333 Mir301b miRNA Interval_159213 chr8 91797489 91798211 + 0 NA TTS (ENSMUSG00000031734.13) protein_coding-TTS (ENSMUSG00000031734.13) -3602 ENSMUSG00000110304.1 ENSMUSG00000110304 ENSMUST00000210339 Gm36380 lincRNA Interval_50914 chr14 20733930 20734851 + 0 NA TTS (ENSMUSG00000021820.18) protein_coding-TTS (ENSMUSG00000021820.18) -4072 ENSMUSG00000039308.6 ENSMUSG00000039308 ENSMUST00000225320 Ndst2 protein_coding Interval_48447 chr13 99089732 99092633 + 0 NA Intergenic Intergenic -3261 ENSMUSG00000100410.1 ENSMUSG00000100410 ENSMUST00000189489 2310020H05Rik lincRNA Interval_7298 chr1 128578260 128578636 + 0 NA Intergenic Intergenic 13845 ENSMUSG00000045382.6 ENSMUSG00000045382 ENSMUST00000142893 Cxcr4 protein_coding Interval_48356 chr13 98454728 98457057 + 0 NA Intergenic Intergenic -20827 ENSMUSG00000099446.1 ENSMUSG00000099446 ENSMUST00000186644 2310005E17Rik lincRNA Interval_116533 chr4 115088286 115089115 + 0 NA promoter-TSS (ENSMUSG00000028716.15) protein_coding-promoter-TSS (ENSMUSG00000028716.15) -8 ENSMUSG00000028716.15 ENSMUSG00000028716 ENSMUST00000146578 Pdzk1ip1 protein_coding Interval_128222 chr5 111842811 111843025 + 0 NA Intergenic Intergenic 49531 ENSMUSG00000105376.4 ENSMUSG00000105376 ENSMUST00000200641 Gm36535 lincRNA Interval_142090 chr6 137098919 137099909 + 0 NA intron (ENSMUSG00000030222.13, intron 2 of 4) protein_coding-intron (ENSMUSG00000030222.13, intron 2 of 4) 40649 ENSMUSG00000030222.13 ENSMUSG00000030222 ENSMUST00000149100 Rerg protein_coding Interval_44879 chr13 49319873 49320642 + 0 NA promoter-TSS (ENSMUSG00000037946.11) protein_coding-promoter-TSS (ENSMUSG00000037946.11) -11017 ENSMUSG00000037946.11 ENSMUSG00000037946 ENSMUST00000110086 Fgd3 protein_coding Interval_70992 chr17 17035595 17036187 + 0 NA Intergenic Intergenic -28222 ENSMUSG00000096696.1 ENSMUSG00000096696 ENSMUST00000127027 Zfp960 protein_coding Interval_98986 chr2 156490625 156490886 + 0 NA intron (ENSMUSG00000027624.20, intron 1 of 21) protein_coding-intron (ENSMUSG00000027624.20, intron 1 of 21) -15639 ENSMUSG00000027624.20 ENSMUSG00000027624 ENSMUST00000137067 Epb41l1 protein_coding Interval_139205 chr6 97187824 97188400 + 0 NA intron (ENSMUSG00000030061.16, intron 11 of 17) protein_coding-intron (ENSMUSG00000030061.16, intron 11 of 17) 9381 ENSMUSG00000030061.16 ENSMUSG00000030061 ENSMUST00000203215 Uba3 protein_coding Interval_80513 chr18 43180715 43181023 + 0 NA Intergenic Intergenic -9681 ENSMUSG00000117792.1 ENSMUSG00000117792 ENSMUST00000235443 4930588A03Rik processed_transcript Interval_88989 chr2 14048193 14048982 + 0 NA intron (ENSMUSG00000063275.15, intron 1 of 7) protein_coding-intron (ENSMUSG00000063275.15, intron 2 of 7) 7449 ENSMUSG00000063275.15 ENSMUSG00000063275 ENSMUST00000074854 Hacd1 protein_coding Interval_40272 chr12 102973626 102974155 + 0 NA intron (ENSMUSG00000021198.16, intron 1 of 51) protein_coding-intron (ENSMUSG00000021198.16, intron 1 of 48) -13939 ENSMUSG00000105998.1 ENSMUSG00000105998 ENSMUST00000198517 Gm44324 miRNA Interval_160831 chr8 113362058 113362472 + 0 NA Intergenic Intergenic 157341 ENSMUSG00000077289.1 ENSMUSG00000077289 ENSMUST00000104101 Gm25766 snoRNA Interval_8674 chr1 146822391 146822683 + 0 NA intron (ENSMUSG00000085822.2, intron 2 of 4) protein_coding-intron (ENSMUSG00000035131.14, intron 6 of 7) -15197 ENSMUSG00000087627.2 ENSMUSG00000087627 ENSMUST00000191937 A230059L01Rik processed_transcript Interval_34690 chr12 8703000 8703551 + 0 NA intron (ENSMUSG00000020594.14, intron 4 of 21) protein_coding-intron (ENSMUSG00000020594.14, intron 2 of 19) 29141 ENSMUSG00000020594.14 ENSMUSG00000020594 ENSMUST00000171608 Pum2 protein_coding Interval_138516 chr6 88855510 88856051 + 0 NA intron (ENSMUSG00000033152.13, intron 2 of 7) protein_coding-intron (ENSMUSG00000033152.13, intron 2 of 7) -6937 ENSMUSG00000033152.13 ENSMUSG00000033152 ENSMUST00000135843 Podxl2 protein_coding Interval_162376 chr8 127564129 127565378 + 0 NA intron (ENSMUSG00000025812.18, intron 22 of 24) protein_coding-intron (ENSMUSG00000025812.18, intron 21 of 23) 3318 ENSMUSG00000090074.1 ENSMUSG00000090074 ENSMUST00000161478 Gm6921 processed_pseudogene Interval_53018 chr14 53547565 53547789 + 0 NA Intergenic Intergenic 2663 ENSMUSG00000076839.3 ENSMUSG00000076839 ENSMUST00000103651 Trav13-1 TR_V_gene Interval_141781 chr6 134439272 134440336 + 0 NA Intergenic Intergenic -15451 ENSMUSG00000107767.1 ENSMUSG00000107767 ENSMUST00000205104 Gm44448 lincRNA Interval_147687 chr7 72004053 72005441 + 0 NA intron (ENSMUSG00000108800.1, intron 2 of 2) lincRNA-intron (ENSMUSG00000108800.1, intron 2 of 2) -42729 ENSMUSG00000108480.1 ENSMUSG00000108480 ENSMUST00000205873 Gm36633 lincRNA Interval_69703 chr16 95674729 95675770 + 0 NA Intergenic Intergenic -27206 ENSMUSG00000022895.16 ENSMUSG00000022895 ENSMUST00000233578 Ets2 protein_coding Interval_85036 chr19 21712762 21714612 + 0 NA Intergenic Intergenic -15583 ENSMUSG00000118055.1 ENSMUSG00000118055 ENSMUST00000235761 Gm50129 processed_pseudogene Interval_65676 chr16 25058237 25060136 + 0 NA promoter-TSS (ENSMUSG00000096960.1) lincRNA-promoter-TSS (ENSMUSG00000096960.1) -453 ENSMUSG00000096960.1 ENSMUSG00000096960 ENSMUST00000181655 A230028O05Rik lincRNA Interval_148525 chr7 82109415 82109590 + 0 NA Intergenic Intergenic -10570 ENSMUSG00000108868.1 ENSMUSG00000108868 ENSMUST00000209149 Gm32850 lincRNA Interval_158738 chr8 85665306 85665617 + 0 NA intron (ENSMUSG00000036902.11, intron 4 of 8) protein_coding-intron (ENSMUSG00000036902.11, intron 4 of 8) -35444 ENSMUSG00000098388.1 ENSMUSG00000098388 ENSMUST00000184375 Mir8109 miRNA Interval_57991 chr15 25884574 25884792 + 0 NA intron (ENSMUSG00000022270.16, intron 1 of 8) protein_coding-intron (ENSMUSG00000022270.16, intron 1 of 8) -25741 ENSMUSG00000022270.16 ENSMUSG00000022270 ENSMUST00000228306 Retreg1 protein_coding Interval_90389 chr2 30133282 30135701 + 0 NA intron (ENSMUSG00000039678.12, intron 1 of 1) protein_coding-intron (ENSMUSG00000039678.12, intron 1 of 11) 719 ENSMUSG00000039678.12 ENSMUSG00000039678 ENSMUST00000132324 Tbc1d13 protein_coding Interval_81727 chr18 63924361 63925744 + 0 NA intron (ENSMUSG00000040560.10, intron 22 of 26) protein_coding-intron (ENSMUSG00000040560.10, intron 23 of 27) -15896 ENSMUSG00000084642.1 ENSMUSG00000084642 ENSMUST00000122693 Gm24384 snRNA Interval_48412 chr13 98867538 98868536 + 0 NA exon (ENSMUSG00000009470.17, exon 7 of 7) protein_coding-exon (ENSMUSG00000009470.17, exon 7 of 7) 2286 ENSMUSG00000009470.17 ENSMUSG00000009470 ENSMUST00000179271 Tnpo1 protein_coding Interval_157180 chr8 67050008 67050335 + 0 NA Intergenic Intergenic 3962 ENSMUSG00000110583.1 ENSMUSG00000110583 ENSMUST00000212608 Gm7639 processed_pseudogene Interval_123847 chr5 35921595 35922124 + 0 NA intron (ENSMUSG00000029094.12, intron 1 of 14) protein_coding-intron (ENSMUSG00000029094.12, intron 1 of 16) 3962 ENSMUSG00000082692.2 ENSMUSG00000082692 ENSMUST00000119066 H2af-ps processed_pseudogene Interval_138174 chr6 85894989 85895768 + 0 NA Intergenic Intergenic 6052 ENSMUSG00000106784.1 ENSMUSG00000106784 ENSMUST00000200837 Gm43309 processed_pseudogene Interval_59590 chr15 55667804 55668029 + 0 NA intron (ENSMUSG00000060429.12, intron 4 of 6) protein_coding-intron (ENSMUSG00000060429.12, intron 4 of 6) 50329 ENSMUSG00000022369.13 ENSMUSG00000022369 ENSMUST00000166449 Mtbp protein_coding Interval_142244 chr6 139808801 139809817 + 0 NA intron (ENSMUSG00000030228.18, intron 6 of 20) protein_coding-intron (ENSMUSG00000030228.18, intron 9 of 23) -21078 ENSMUSG00000107870.1 ENSMUSG00000107870 ENSMUST00000204549 Gm43940 TEC Interval_88894 chr2 12222799 12223082 + 0 NA intron (ENSMUSG00000026768.10, intron 3 of 3) protein_coding-intron (ENSMUSG00000026768.10, intron 13 of 29) -78379 ENSMUSG00000086843.3 ENSMUSG00000086843 ENSMUST00000150037 E030013I19Rik antisense Interval_80630 chr18 44828162 44829200 + 0 NA exon (ENSMUSG00000034653.11, exon 1 of 30) protein_coding-exon (ENSMUSG00000034653.11, exon 1 of 30) 6912 ENSMUSG00000107325.1 ENSMUSG00000107325 ENSMUST00000201793 Gm43425 TEC Interval_107594 chr3 108778848 108779081 + 0 NA intron (ENSMUSG00000049565.16, intron 10 of 11) protein_coding-intron (ENSMUSG00000049565.16, intron 10 of 11) 26438 ENSMUSG00000049565.16 ENSMUSG00000049565 ENSMUST00000147916 Aknad1 protein_coding Interval_135936 chr6 48907833 48908035 + 0 NA intron (ENSMUSG00000029811.14, intron 3 of 4) protein_coding-intron (ENSMUSG00000029811.14, intron 3 of 4) -21961 ENSMUSG00000029813.8 ENSMUSG00000029813 ENSMUST00000031837 Doxl1 protein_coding Interval_140669 chr6 120425172 120425652 + 0 NA intron (ENSMUSG00000030180.15, intron 22 of 27) protein_coding-intron (ENSMUSG00000030180.15, intron 22 of 27) -37835 ENSMUSG00000002897.5 ENSMUSG00000002897 ENSMUST00000204078 Il17ra protein_coding Interval_25767 chr11 51605732 51607383 + 0 NA exon (ENSMUSG00000020358.17, exon 2 of 7) protein_coding-exon (ENSMUSG00000020358.17, exon 2 of 7) 290 ENSMUSG00000020358.17 ENSMUSG00000020358 ENSMUST00000109103 Hnrnpab protein_coding Interval_128929 chr5 116140243 116140641 + 0 NA intron (ENSMUSG00000043913.14, intron 9 of 13) protein_coding-intron (ENSMUSG00000043913.14, intron 9 of 13) 16828 ENSMUSG00000086655.1 ENSMUSG00000086655 ENSMUST00000127792 C330018A13Rik antisense Interval_142352 chr6 140797132 140797642 + 0 NA Intergenic Intergenic -12683 ENSMUSG00000108039.1 ENSMUSG00000108039 ENSMUST00000203498 Gm43925 processed_pseudogene Interval_10498 chr1 171328606 171330438 + 0 NA promoter-TSS (ENSMUSG00000013973.12) protein_coding-promoter-TSS (ENSMUSG00000013973.12) -833 ENSMUSG00000013973.12 ENSMUSG00000013973 ENSMUST00000127830 Dedd protein_coding Interval_18268 chr10 84482643 84483246 + 0 NA Intergenic Intergenic -5790 ENSMUSG00000020033.2 ENSMUSG00000020033 ENSMUST00000168525 4930463O16Rik lincRNA Interval_153946 chr8 11430374 11431276 + 0 NA intron (ENSMUSG00000031503.13, intron 29 of 47) protein_coding-intron (ENSMUSG00000031503.13, intron 29 of 47) -10284 ENSMUSG00000031503.13 ENSMUSG00000031503 ENSMUST00000146219 Col4a2 protein_coding Interval_98213 chr2 149938699 149939971 + 0 NA intron (ENSMUSG00000074736.10, intron 3 of 3) protein_coding-intron (ENSMUSG00000074736.10, intron 4 of 4) -107693 ENSMUSG00000074737.2 ENSMUSG00000074737 ENSMUST00000099264 C530025M09Rik antisense Interval_14749 chr10 39571618 39574474 + 0 NA intron (ENSMUSG00000086915.7, intron 2 of 2) antisense-intron (ENSMUSG00000086915.7, intron 1 of 3) -14984 ENSMUSG00000087014.1 ENSMUSG00000087014 ENSMUST00000153722 Gm16364 antisense Interval_7426 chr1 131232538 131233720 + 0 NA intron (ENSMUSG00000026430.16, intron 1 of 2) protein_coding-intron (ENSMUSG00000026430.16, intron 1 of 5) 446 ENSMUSG00000026430.16 ENSMUSG00000026430 ENSMUST00000124796 Rassf5 protein_coding Interval_156909 chr8 61599950 61600214 + 0 NA intron (ENSMUSG00000058056.16, intron 10 of 21) protein_coding-intron (ENSMUSG00000058056.16, intron 10 of 19) -84182 ENSMUSG00000058056.16 ENSMUSG00000058056 ENSMUST00000123523 Palld protein_coding Interval_111778 chr4 28548361 28548594 + 0 NA Intergenic Intergenic 12229 ENSMUSG00000081579.1 ENSMUSG00000081579 ENSMUST00000121424 Gm11909 processed_pseudogene Interval_142656 chr6 144781370 144783276 + 0 NA promoter-TSS (ENSMUSG00000041540.16) protein_coding-promoter-TSS (ENSMUSG00000041540.16) 21309 ENSMUSG00000087850.1 ENSMUSG00000087850 ENSMUST00000157225 Gm22792 snoRNA Interval_20359 chr10 117097325 117097519 + 0 NA intron (ENSMUSG00000020170.4, intron 4 of 5) protein_coding-intron (ENSMUSG00000020170.4, intron 4 of 9) -42521 ENSMUSG00000034024.8 ENSMUSG00000034024 ENSMUST00000218059 Cct2 protein_coding Interval_86990 chr19 45384383 45384765 + 0 NA intron (ENSMUSG00000025217.15, intron 1 of 2) protein_coding-intron (ENSMUSG00000025217.15, intron 1 of 14) 20817 ENSMUSG00000025217.15 ENSMUSG00000025217 ENSMUST00000224478 Btrc protein_coding Interval_54763 chr14 74860992 74861858 + 0 NA intron (ENSMUSG00000068015.8, intron 1 of 18) protein_coding-intron (ENSMUSG00000068015.8, intron 1 of 19) -65020 ENSMUSG00000115002.1 ENSMUSG00000115002 ENSMUST00000227773 Gm10847 antisense Interval_85126 chr19 23050270 23051165 + 0 NA intron (ENSMUSG00000097930.2, intron 6 of 6) lincRNA-intron (ENSMUSG00000097930.2, intron 6 of 6) -10737 ENSMUSG00000118155.1 ENSMUSG00000118155 ENSMUST00000235686 Gm50136 lincRNA Interval_102111 chr3 17793539 17795234 + 0 NA promoter-TSS (ENSMUSG00000100252.6) lincRNA-promoter-TSS (ENSMUSG00000100252.6) -1276 ENSMUSG00000093073.1 ENSMUSG00000093073 ENSMUST00000175332 Mir124a-2 miRNA Interval_75778 chr17 71274603 71275002 + 0 NA TTS (ENSMUSG00000024053.11) protein_coding-TTS (ENSMUSG00000024053.11) 35479 ENSMUSG00000024053.11 ENSMUSG00000024053 ENSMUST00000233659 Emilin2 protein_coding Interval_105518 chr3 87192281 87195868 + 0 NA Intergenic Intergenic 13931 ENSMUSG00000074506.4 ENSMUSG00000074506 ENSMUST00000098980 Gm10705 processed_pseudogene Interval_141250 chr6 126533735 126535707 + 0 NA exon (ENSMUSG00000045534.4, exon 1 of 1) protein_coding-exon (ENSMUSG00000045534.4, exon 1 of 1) 691 ENSMUSG00000045534.4 ENSMUSG00000045534 ENSMUST00000060972 Kcna5 protein_coding Interval_57945 chr15 25684986 25685302 + 0 NA intron (ENSMUSG00000022272.17, intron 1 of 4) protein_coding-intron (ENSMUSG00000022272.17, intron 2 of 40) 3346 ENSMUSG00000089639.1 ENSMUSG00000089639 ENSMUST00000161524 Gm2862 processed_pseudogene Interval_41998 chr13 6258677 6259144 + 0 NA Intergenic Intergenic -10198 ENSMUSG00000113765.1 ENSMUSG00000113765 ENSMUST00000222170 Gm47549 lincRNA Interval_163487 chr9 21678921 21679128 + 0 NA TTS (ENSMUSG00000099192.1) misc_RNA-TTS (ENSMUSG00000099192.1) 1111 ENSMUSG00000099192.1 ENSMUSG00000099192 ENSMUST00000184017 Gm27373 misc_RNA Interval_604 chr1 8627388 8627592 + 0 NA intron (ENSMUSG00000025909.16, intron 10 of 20) protein_coding-intron (ENSMUSG00000025909.16, intron 6 of 16) 17369 ENSMUSG00000103884.1 ENSMUSG00000103884 ENSMUST00000193281 Gm37005 TEC Interval_173061 chrX 69245984 69246995 + 0 NA Intergenic Intergenic 113852 ENSMUSG00000086676.2 ENSMUSG00000086676 ENSMUST00000187253 Gm14705 antisense Interval_156681 chr8 57122909 57123155 + 0 NA Intergenic Intergenic 169020 ENSMUSG00000110327.1 ENSMUSG00000110327 ENSMUST00000209260 Gm17994 processed_pseudogene Interval_28493 chr11 76337869 76338211 + 0 NA intron (ENSMUSG00000020844.6, intron 1 of 7) protein_coding-intron (ENSMUSG00000020844.6, intron 1 of 7) 61028 ENSMUSG00000020844.6 ENSMUSG00000020844 ENSMUST00000131472 Nxn protein_coding Interval_105330 chr3 84996288 84996511 + 0 NA intron (ENSMUSG00000102805.5, intron 3 of 9) protein_coding-intron (ENSMUSG00000102805.5, intron 3 of 9) 122508 ENSMUSG00000102919.1 ENSMUSG00000102919 ENSMUST00000193246 Gm37726 TEC Interval_168218 chr9 78005281 78007088 + 0 NA Intergenic Intergenic 7914 ENSMUSG00000077730.1 ENSMUSG00000077730 ENSMUST00000104542 Gm23609 snoRNA Interval_164836 chr9 42375307 42375619 + 0 NA exon (ENSMUSG00000037705.13, exon 9 of 24) protein_coding-exon (ENSMUSG00000037705.13, exon 9 of 24) -10399 ENSMUSG00000110937.1 ENSMUSG00000110937 ENSMUST00000215213 Gm47629 antisense Interval_151805 chr7 126770379 126771476 + 0 NA intron (ENSMUSG00000030703.8, intron 1 of 2) protein_coding-intron (ENSMUSG00000030703.8, intron 7 of 9) 2777 ENSMUSG00000030703.8 ENSMUSG00000030703 ENSMUST00000205910 Gdpd3 protein_coding Interval_2773 chr1 44619377 44619723 + 0 NA intron (ENSMUSG00000056870.9, intron 2 of 3) protein_coding-intron (ENSMUSG00000056870.9, intron 1 of 10) -24729 ENSMUSG00000089877.1 ENSMUSG00000089877 ENSMUST00000160955 Gm16102 processed_pseudogene Interval_110 GL456239.1 3154 4027 + 0 NA NA NA NA NA Interval_120942 chr4 151808596 151809443 + 0 NA intron (ENSMUSG00000014592.21, intron 3 of 3) protein_coding-intron (ENSMUSG00000014592.21, intron 3 of 23) 52685 ENSMUSG00000014592.21 ENSMUSG00000014592 ENSMUST00000135780 Camta1 protein_coding Interval_31699 chr11 102327247 102330330 + 0 NA Intergenic Intergenic -9692 ENSMUSG00000020923.17 ENSMUSG00000020923 ENSMUST00000128016 Ubtf protein_coding Interval_165840 chr9 53705593 53707017 + 0 NA promoter-TSS (ENSMUSG00000055069.3) protein_coding-promoter-TSS (ENSMUSG00000055069.3) -73 ENSMUSG00000055069.3 ENSMUSG00000055069 ENSMUST00000068449 Rab39 protein_coding Interval_53965 chr14 63869649 63869984 + 0 NA intron (ENSMUSG00000021958.5, intron 4 of 6) protein_coding-intron (ENSMUSG00000021958.5, intron 4 of 6) -29953 ENSMUSG00000021958.5 ENSMUSG00000021958 ENSMUST00000225564 Pinx1 protein_coding Interval_166150 chr9 57075383 57077472 + 0 NA promoter-TSS (ENSMUSG00000042557.14) protein_coding-promoter-TSS (ENSMUSG00000042557.14) 4387 ENSMUSG00000042557.14 ENSMUSG00000042557 ENSMUST00000167963 Sin3a protein_coding Interval_127869 chr5 108422744 108423153 + 0 NA intron (ENSMUSG00000029491.7, intron 8 of 17) protein_coding-intron (ENSMUSG00000029491.7, intron 8 of 21) 11449 ENSMUSG00000050856.16 ENSMUSG00000050856 ENSMUST00000123184 Atp5k protein_coding Interval_24366 chr11 32687748 32687962 + 0 NA intron (ENSMUSG00000020271.17, intron 3 of 4) protein_coding-intron (ENSMUSG00000020271.17, intron 2 of 13) 44951 ENSMUSG00000020271.17 ENSMUSG00000020271 ENSMUST00000143290 Fbxw11 protein_coding Interval_71268 chr17 21747659 21748305 + 0 NA exon (ENSMUSG00000061544.13, exon 6 of 6) protein_coding-exon (ENSMUSG00000061544.13, exon 6 of 6) 14258 ENSMUSG00000061544.13 ENSMUSG00000061544 ENSMUST00000182603 Zfp229 protein_coding Interval_1366 chr1 21008022 21008291 + 0 NA intron (ENSMUSG00000041779.5, intron 4 of 7) protein_coding-intron (ENSMUSG00000041779.5, intron 4 of 10) 35500 ENSMUSG00000041779.5 ENSMUSG00000041779 ENSMUST00000187210 Tram2 protein_coding Interval_84938 chr19 19222926 19223282 + 0 NA Intergenic Intergenic -52795 ENSMUSG00000088907.1 ENSMUSG00000088907 ENSMUST00000158282 Gm25437 snoRNA Interval_100199 chr2 167595597 167598212 + 0 NA intron (ENSMUSG00000085596.1, intron 2 of 3) processed_transcript-intron (ENSMUSG00000085596.1, intron 2 of 3) 5509 ENSMUSG00000081511.1 ENSMUSG00000081511 ENSMUST00000118482 Gm11475 processed_pseudogene Interval_102708 chr3 30481499 30482277 + 0 NA intron (ENSMUSG00000027684.16, intron 2 of 8) protein_coding-intron (ENSMUSG00000027684.16, intron 1 of 11) -6538 ENSMUSG00000104079.1 ENSMUSG00000104079 ENSMUST00000192224 Gm37024 TEC Interval_74446 chr17 50686923 50687944 + 0 NA intron (ENSMUSG00000038910.7, intron 5 of 5) protein_coding-intron (ENSMUSG00000038910.7, intron 5 of 5) -11255 ENSMUSG00000044645.8 ENSMUSG00000044645 ENSMUST00000061681 Gm7334 processed_pseudogene Interval_139067 chr6 94740239 94740541 + 0 NA Intergenic Intergenic -40232 ENSMUSG00000030029.14 ENSMUSG00000030029 ENSMUST00000124165 Lrig1 protein_coding Interval_96829 chr2 128661736 128661997 + 0 NA exon (ENSMUSG00000014355.10, exon 1 of 3) protein_coding-exon (ENSMUSG00000014355.10, exon 1 of 3) -33227 ENSMUSG00000014355.10 ENSMUSG00000014355 ENSMUST00000110332 Anapc1 protein_coding Interval_33898 chr11 119258575 119259193 + 0 NA promoter-TSS (ENSMUSG00000039963.20) protein_coding-promoter-TSS (ENSMUSG00000039963.20) -15972 ENSMUSG00000025579.14 ENSMUSG00000025579 ENSMUST00000138510 Gaa protein_coding Interval_145047 chr7 29706999 29707384 + 0 NA intron (ENSMUSG00000049123.10, intron 15 of 27) protein_coding-intron (ENSMUSG00000049123.10, intron 16 of 28) 18278 ENSMUSG00000049123.10 ENSMUSG00000049123 ENSMUST00000207130 Catsperg2 protein_coding Interval_139501 chr6 100576351 100576569 + 0 NA intron (ENSMUSG00000035378.17, intron 10 of 10) protein_coding-intron (ENSMUSG00000035378.17, intron 7 of 7) -28223 ENSMUSG00000079224.5 ENSMUSG00000079224 ENSMUST00000121217 Gm6565 processed_pseudogene Interval_167574 chr9 70552404 70552737 + 0 NA intron (ENSMUSG00000032212.10, intron 2 of 19) protein_coding-intron (ENSMUSG00000032212.10, intron 2 of 20) 9690 ENSMUSG00000032212.10 ENSMUSG00000032212 ENSMUST00000216881 Sltm protein_coding Interval_85411 chr19 25579588 25579937 + 0 NA intron (ENSMUSG00000024837.15, intron 3 of 3) protein_coding-intron (ENSMUSG00000024837.15, intron 4 of 4) -30539 ENSMUSG00000042372.5 ENSMUSG00000042372 ENSMUST00000048935 Dmrt3 protein_coding Interval_111579 chr4 23846452 23846856 + 0 NA Intergenic Intergenic 87300 ENSMUSG00000100395.1 ENSMUSG00000100395 ENSMUST00000188547 Gm28448 lincRNA Interval_127674 chr5 106527410 106527691 + 0 NA intron (ENSMUSG00000099061.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000099061.1, intron 1 of 2) 47165 ENSMUSG00000099061.1 ENSMUSG00000099061 ENSMUST00000124394 Gm28050 lincRNA Interval_46635 chr13 67803824 67804205 + 0 NA intron (ENSMUSG00000097276.1, intron 2 of 2) antisense-intron (ENSMUSG00000097276.1, intron 2 of 2) -6232 ENSMUSG00000097906.1 ENSMUSG00000097906 ENSMUST00000180422 Gm9625 processed_pseudogene Interval_144125 chr7 19543749 19544360 + 0 NA intron (ENSMUSG00000051403.9, intron 1 of 12) protein_coding-intron (ENSMUSG00000051403.9, intron 1 of 12) -11072 ENSMUSG00000051403.9 ENSMUSG00000051403 ENSMUST00000208678 Ppp1r37 protein_coding Interval_164643 chr9 40253254 40254869 + 0 NA Intergenic Intergenic 22471 ENSMUSG00000111509.1 ENSMUSG00000111509 ENSMUST00000215330 Gm47266 TEC Interval_36364 chr12 42080703 42080988 + 0 NA Intergenic Intergenic -7594 ENSMUSG00000113989.1 ENSMUSG00000113989 ENSMUST00000222694 Gm47013 lincRNA Interval_80870 chr18 49755052 49756294 + 0 NA promoter-TSS (ENSMUSG00000024505.16) protein_coding-promoter-TSS (ENSMUSG00000024505.16) -106 ENSMUSG00000024505.16 ENSMUSG00000024505 ENSMUST00000237137 Dtwd2 protein_coding Interval_94833 chr2 95800538 95800722 + 0 NA Intergenic Intergenic -37458 ENSMUSG00000087537.1 ENSMUSG00000087537 ENSMUST00000138883 Gm13799 lincRNA Interval_138520 chr6 88882436 88882645 + 0 NA promoter-TSS (ENSMUSG00000107432.1) processed_pseudogene-promoter-TSS (ENSMUSG00000107432.1) -115 ENSMUSG00000107432.1 ENSMUSG00000107432 ENSMUST00000204113 Gm36189 processed_pseudogene Interval_66086 chr16 31506829 31509453 + 0 NA promoter-TSS (ENSMUSG00000116762.1) lincRNA-promoter-TSS (ENSMUSG00000116762.1) -246 ENSMUSG00000116762.1 ENSMUSG00000116762 ENSMUST00000231805 Gm46560 lincRNA Interval_129555 chr5 120894051 120895697 + 0 NA Intergenic Intergenic -7261 ENSMUSG00000066861.14 ENSMUSG00000066861 ENSMUST00000161809 Oas1g protein_coding Interval_169718 chr9 100642334 100644624 + 0 NA promoter-TSS (ENSMUSG00000037286.15) protein_coding-promoter-TSS (ENSMUSG00000037286.15) -17514 ENSMUSG00000086225.1 ENSMUSG00000086225 ENSMUST00000118688 Gm8661 processed_pseudogene Interval_89250 chr2 18448696 18448898 + 0 NA Intergenic Intergenic -109808 ENSMUSG00000082520.2 ENSMUSG00000082520 ENSMUST00000118436 Gm13349 processed_pseudogene Interval_48926 chr13 104921486 104922282 + 0 NA Intergenic Intergenic 3104 ENSMUSG00000114326.1 ENSMUSG00000114326 ENSMUST00000171334 Gm4938 processed_pseudogene Interval_155584 chr8 34837397 34838290 + 0 NA TTS (ENSMUSG00000031529.5) protein_coding-TTS (ENSMUSG00000031529.5) 30546 ENSMUSG00000031530.6 ENSMUSG00000031530 ENSMUST00000033930 Dusp4 protein_coding Interval_90586 chr2 31282102 31282984 + 0 NA intron (ENSMUSG00000062661.6, intron 3 of 5) protein_coding-intron (ENSMUSG00000062661.6, intron 4 of 7) -31872 ENSMUSG00000055632.18 ENSMUSG00000055632 ENSMUST00000141294 Hmcn2 protein_coding Interval_33817 chr11 118724100 118724588 + 0 NA intron (ENSMUSG00000025576.17, intron 2 of 14) protein_coding-intron (ENSMUSG00000025576.17, intron 2 of 14) -67028 ENSMUSG00000085059.1 ENSMUSG00000085059 ENSMUST00000146016 Gm11750 lincRNA Interval_160994 chr8 116743523 116743790 + 0 NA Intergenic Intergenic -10665 ENSMUSG00000031758.10 ENSMUSG00000031758 ENSMUST00000109102 Cdyl2 protein_coding Interval_143615 chr7 13193095 13194184 + 0 NA exon (ENSMUSG00000110365.1, exon 3 of 3) lincRNA-exon (ENSMUSG00000110365.1, exon 3 of 3) -2990 ENSMUSG00000109911.1 ENSMUSG00000109911 ENSMUST00000210800 Gm45525 unprocessed_pseudogene Interval_74020 chr17 46096181 46096624 + 0 NA Intergenic Intergenic -1731 ENSMUSG00000117109.1 ENSMUSG00000117109 ENSMUST00000233497 Gm19969 processed_pseudogene Interval_41270 chr12 112309557 112310635 + 0 NA Intergenic Intergenic 39971 ENSMUSG00000103080.1 ENSMUSG00000103080 ENSMUST00000194990 Gm38123 TEC Interval_90603 chr2 31416747 31417055 + 0 NA intron (ENSMUSG00000055632.18, intron 62 of 97) protein_coding-intron (ENSMUSG00000055632.18, intron 62 of 97) -83825 ENSMUSG00000076441.9 ENSMUSG00000076441 ENSMUST00000130195 Ass1 protein_coding Interval_107336 chr3 105952853 105953139 + 0 NA TTS (ENSMUSG00000000563.17) protein_coding-TTS (ENSMUSG00000000563.17) 1185 ENSMUSG00000000563.17 ENSMUSG00000000563 ENSMUST00000123959 Atp5pb protein_coding Interval_22433 chr11 10016562 10017425 + 0 NA Intergenic Intergenic -222344 ENSMUSG00000082312.1 ENSMUSG00000082312 ENSMUST00000117538 Gm11996 processed_pseudogene Interval_58877 chr15 39616337 39616868 + 0 NA TTS (ENSMUSG00000037386.16) protein_coding-TTS (ENSMUSG00000037386.16) -129332 ENSMUSG00000022303.9 ENSMUSG00000022303 ENSMUST00000227792 Dcstamp protein_coding Interval_131898 chr5 140668028 140668690 + 0 NA intron (ENSMUSG00000036555.14, intron 17 of 18) protein_coding-intron (ENSMUSG00000036555.14, intron 21 of 22) -19362 ENSMUSG00000036565.7 ENSMUSG00000036565 ENSMUST00000200302 Ttyh3 protein_coding Interval_151721 chr7 126255313 126256206 + 0 NA intron (ENSMUSG00000042978.11, intron 1 of 3) protein_coding-intron (ENSMUSG00000042978.11, intron 1 of 3) 6897 ENSMUSG00000042978.11 ENSMUSG00000042978 ENSMUST00000206541 Sbk1 protein_coding Interval_22448 chr11 10235326 10235604 + 0 NA Intergenic Intergenic -3872 ENSMUSG00000082312.1 ENSMUSG00000082312 ENSMUST00000117538 Gm11996 processed_pseudogene Interval_9450 chr1 157253137 157254117 + 0 NA intron (ENSMUSG00000070565.11, intron 3 of 17) protein_coding-intron (ENSMUSG00000070565.11, intron 3 of 17) -22436 ENSMUSG00000070565.11 ENSMUSG00000070565 ENSMUST00000143080 Rasal2 protein_coding Interval_63845 chr16 3962351 3962577 + 0 NA exon (ENSMUSG00000049871.14, exon 3 of 14) protein_coding-exon (ENSMUSG00000049871.14, exon 3 of 14) 3176 ENSMUSG00000049871.14 ENSMUSG00000049871 ENSMUST00000163478 Nlrc3 protein_coding Interval_2763 chr1 44397988 44398397 + 0 NA Intergenic Intergenic 5383 ENSMUSG00000100769.1 ENSMUSG00000100769 ENSMUST00000190951 Gm28893 processed_transcript Interval_54390 chr14 68169619 68169862 + 0 NA Intergenic Intergenic -2666 ENSMUSG00000087772.1 ENSMUSG00000087772 ENSMUST00000157147 Gm22319 snoRNA Interval_43565 chr13 33603499 33603897 + 0 NA Intergenic Intergenic -6922 ENSMUSG00000113398.1 ENSMUSG00000113398 ENSMUST00000221457 Gm5194 processed_pseudogene Interval_159368 chr8 94109591 94111122 + 0 NA Intergenic Intergenic -26841 ENSMUSG00000031757.7 ENSMUSG00000031757 ENSMUST00000034207 Mt4 protein_coding Interval_4272 chr1 72306703 72307836 + 0 NA promoter-TSS (ENSMUSG00000026187.9) protein_coding-promoter-TSS (ENSMUSG00000026187.9) -158 ENSMUSG00000026187.9 ENSMUSG00000026187 ENSMUST00000027379 Xrcc5 protein_coding Interval_75480 chr17 67139110 67139348 + 0 NA intron (ENSMUSG00000033278.10, intron 2 of 19) protein_coding-intron (ENSMUSG00000033278.10, intron 2 of 32) -112994 ENSMUSG00000093508.1 ENSMUSG00000093508 ENSMUST00000176783 Mir5709 miRNA Interval_161002 chr8 116814275 116815016 + 0 NA Intergenic Intergenic -49166 ENSMUSG00000074072.2 ENSMUSG00000074072 ENSMUST00000098379 Gm10620 pseudogene Interval_151382 chr7 121981075 121982038 + 0 NA promoter-TSS (ENSMUSG00000108511.1) antisense-promoter-TSS (ENSMUSG00000108511.1) -205 ENSMUSG00000108511.1 ENSMUSG00000108511 ENSMUST00000206578 Gm44987 antisense Interval_8569 chr1 143028302 143028571 + 0 NA Intergenic Intergenic 66180 ENSMUSG00000101795.2 ENSMUSG00000101795 ENSMUST00000185806 Gm5835 processed_pseudogene Interval_150504 chr7 111283488 111284568 + 0 NA Intergenic Intergenic -82270 ENSMUSG00000109808.1 ENSMUSG00000109808 ENSMUST00000211799 5430402P08Rik lincRNA Interval_39573 chr12 90915986 90916458 + 0 NA intron (ENSMUSG00000097071.2, intron 2 of 4) lincRNA-intron (ENSMUSG00000097071.2, intron 2 of 4) 22160 ENSMUSG00000113806.1 ENSMUSG00000113806 ENSMUST00000221621 Gm47688 processed_pseudogene Interval_80143 chr18 37835390 37836971 + 0 NA intron (ENSMUSG00000103793.1, intron 3 of 3) protein_coding-intron (ENSMUSG00000103088.1, intron 3 of 3) -5980 ENSMUSG00000102713.1 ENSMUSG00000102713 ENSMUST00000195495 Gm29994 antisense Interval_48965 chr13 106275629 106275886 + 0 NA Intergenic Intergenic -77986 ENSMUSG00000108515.1 ENSMUSG00000108515 ENSMUST00000205589 Olfr717-ps1 unprocessed_pseudogene Interval_173773 chrX 103957572 103957762 + 0 NA exon (ENSMUSG00000056537.11, exon 5 of 5) protein_coding-exon (ENSMUSG00000056537.11, exon 5 of 5) 23617 ENSMUSG00000056537.11 ENSMUSG00000056537 ENSMUST00000135101 Rlim protein_coding Interval_53178 chr14 54939205 54940190 + 0 NA promoter-TSS (ENSMUSG00000115234.1) antisense-promoter-TSS (ENSMUSG00000115234.1) -658 ENSMUSG00000115234.1 ENSMUSG00000115234 ENSMUST00000227485 Gm49130 antisense Interval_67242 chr16 44695684 44695899 + 0 NA Intergenic Intergenic -28566 ENSMUSG00000036208.13 ENSMUSG00000036208 ENSMUST00000132610 Nepro protein_coding Interval_88360 chr2 4431376 4431945 + 0 NA TTS (ENSMUSG00000026657.17) protein_coding-TTS (ENSMUSG00000026657.17) 35010 ENSMUSG00000086874.1 ENSMUSG00000086874 ENSMUST00000139479 Gm13175 antisense Interval_47096 chr13 75702307 75703001 + 0 NA intron (ENSMUSG00000114125.1, intron 1 of 1) antisense-intron (ENSMUSG00000114125.1, intron 1 of 1) 4518 ENSMUSG00000114125.1 ENSMUSG00000114125 ENSMUST00000223032 1700037F03Rik antisense Interval_68764 chr16 85807471 85807905 + 0 NA Intergenic Intergenic -8050 ENSMUSG00000022893.14 ENSMUSG00000022893 ENSMUST00000138474 Adamts1 protein_coding Interval_9999 chr1 164812802 164813430 + 0 NA intron (ENSMUSG00000026574.5, intron 2 of 3) protein_coding-intron (ENSMUSG00000026574.5, intron 2 of 3) 2183 ENSMUSG00000103659.1 ENSMUSG00000103659 ENSMUST00000193955 Gm32569 antisense Interval_47078 chr13 75453730 75453968 + 0 NA Intergenic Intergenic 25538 ENSMUSG00000113821.1 ENSMUSG00000113821 ENSMUST00000221326 Gm48234 processed_pseudogene Interval_128746 chr5 115049412 115051407 + 0 NA intron (ENSMUSG00000029550.11, intron 2 of 2) protein_coding-intron (ENSMUSG00000029550.11, intron 1 of 10) 3431 ENSMUSG00000086167.3 ENSMUSG00000086167 ENSMUST00000148801 Gm13827 processed_pseudogene Interval_51268 chr14 25636295 25637614 + 0 NA intron (ENSMUSG00000007817.15, intron 7 of 23) protein_coding-intron (ENSMUSG00000007817.15, intron 7 of 23) -57240 ENSMUSG00000021868.7 ENSMUSG00000021868 ENSMUST00000223872 Ppif protein_coding Interval_109734 chr3 146409944 146410627 + 0 NA intron (ENSMUSG00000036825.12, intron 1 of 3) protein_coding-intron (ENSMUSG00000036825.12, intron 1 of 13) 5594 ENSMUSG00000036825.12 ENSMUSG00000036825 ENSMUST00000141103 Ssx2ip protein_coding Interval_112079 chr4 34486030 34486411 + 0 NA TTS (ENSMUSG00000095588.1) processed_pseudogene-TTS (ENSMUSG00000095588.1) 388 ENSMUSG00000095588.1 ENSMUSG00000095588 ENSMUST00000121208 Gm12350 processed_pseudogene Interval_17266 chr10 75437547 75437986 + 0 NA intron (ENSMUSG00000033427.14, intron 8 of 9) protein_coding-intron (ENSMUSG00000033427.14, intron 8 of 9) -4854 ENSMUSG00000084622.1 ENSMUSG00000084622 ENSMUST00000122673 Gm25545 misc_RNA Interval_62842 chr15 97363616 97364516 + 0 NA intron (ENSMUSG00000044250.8, intron 1 of 1) protein_coding-intron (ENSMUSG00000044250.8, intron 4 of 5) 2864 ENSMUSG00000044250.8 ENSMUSG00000044250 ENSMUST00000226495 Pced1b protein_coding Interval_144920 chr7 28930540 28930816 + 0 NA intron (ENSMUSG00000109314.1, intron 1 of 1) protein_coding-intron (ENSMUSG00000054808.15, intron 1 of 20) 12850 ENSMUSG00000109314.1 ENSMUSG00000109314 ENSMUST00000208229 Gm44699 sense_intronic Interval_45963 chr13 59678942 59680573 + 0 NA Intergenic Intergenic -3985 ENSMUSG00000021556.12 ENSMUSG00000021556 ENSMUST00000224160 Golm1 protein_coding Interval_34411 chr12 3925903 3926890 + 0 NA Intergenic Intergenic 5644 ENSMUSG00000112271.1 ENSMUSG00000112271 ENSMUST00000220237 Gm9088 processed_pseudogene Interval_115082 chr4 89387187 89387565 + 0 NA intron (ENSMUSG00000085147.1, intron 3 of 3) processed_transcript-intron (ENSMUSG00000085147.1, intron 3 of 3) 5419 ENSMUSG00000085147.1 ENSMUSG00000085147 ENSMUST00000129908 Gm12609 processed_transcript Interval_148014 chr7 78106197 78106433 + 0 NA Intergenic Intergenic -79675 ENSMUSG00000104817.1 ENSMUSG00000104817 ENSMUST00000196301 Gm44358 miRNA Interval_86435 chr19 40473468 40473791 + 0 NA intron (ENSMUSG00000025006.18, intron 1 of 23) protein_coding-intron (ENSMUSG00000025006.18, intron 1 of 3) 87429 ENSMUSG00000096592.1 ENSMUSG00000096592 ENSMUST00000120920 Gm15801 processed_pseudogene Interval_107735 chr3 112239383 112240412 + 0 NA Intergenic Intergenic -36882 ENSMUSG00000105507.1 ENSMUSG00000105507 ENSMUST00000197162 Gm43853 processed_pseudogene Interval_173010 chrX 62287104 62287815 + 0 NA intron (ENSMUSG00000045330.8, intron 1 of 3) protein_coding-intron (ENSMUSG00000045330.8, intron 1 of 3) 3960 ENSMUSG00000045330.8 ENSMUSG00000045330 ENSMUST00000051414 4933402E13Rik protein_coding Interval_134909 chr6 33476059 33476276 + 0 NA exon (ENSMUSG00000029763.17, exon 10 of 10) protein_coding-exon (ENSMUSG00000029763.17, exon 10 of 10) 43159 ENSMUSG00000107358.1 ENSMUSG00000107358 ENSMUST00000201039 Gm43168 TEC Interval_12675 chr10 4273992 4274424 + 0 NA intron (ENSMUSG00000038587.10, intron 1 of 3) protein_coding-intron (ENSMUSG00000038587.10, intron 1 of 3) -60337 ENSMUSG00000038587.10 ENSMUSG00000038587 ENSMUST00000215696 Akap12 protein_coding Interval_128067 chr5 110638547 110639794 + 0 NA Intergenic Intergenic 14210 ENSMUSG00000033294.11 ENSMUSG00000033294 ENSMUST00000199795 Noc4l protein_coding Interval_81088 chr18 53754811 53756227 + 0 NA Intergenic Intergenic -10956 ENSMUSG00000048799.8 ENSMUSG00000048799 ENSMUST00000235928 Cep120 protein_coding Interval_46148 chr13 62021835 62022301 + 0 NA intron (ENSMUSG00000113836.1, intron 1 of 2) transcribed_processed_pseudogene-intron (ENSMUSG00000113836.1, intron 1 of 3) 6084 ENSMUSG00000113836.1 ENSMUSG00000113836 ENSMUST00000221814 Gm3325 transcribed_processed_pseudogene Interval_6542 chr1 115331593 115332557 + 0 NA Intergenic Intergenic -112312 ENSMUSG00000101687.1 ENSMUSG00000101687 ENSMUST00000185902 Gm4854 processed_pseudogene Interval_40040 chr12 100742938 100743355 + 0 NA Intergenic Intergenic 1789 ENSMUSG00000113113.1 ENSMUSG00000113113 ENSMUST00000223227 Gm2614 processed_pseudogene Interval_75524 chr17 67771327 67771534 + 0 NA intron (ENSMUSG00000032796.8, intron 24 of 62) protein_coding-intron (ENSMUSG00000032796.8, intron 24 of 62) 74165 ENSMUSG00000032796.8 ENSMUSG00000032796 ENSMUST00000233224 Lama1 protein_coding Interval_141438 chr6 128289577 128289957 + 0 NA intron (ENSMUSG00000030353.15, intron 1 of 1) protein_coding-intron (ENSMUSG00000030353.15, intron 1 of 11) -4335 ENSMUSG00000095262.2 ENSMUSG00000095262 ENSMUST00000179119 Gm21893 processed_pseudogene Interval_166672 chr9 61753502 61754337 + 0 NA Intergenic Intergenic -9165 ENSMUSG00000111739.1 ENSMUSG00000111739 ENSMUST00000213572 Gm47241 processed_pseudogene Interval_27425 chr11 67544826 67545152 + 0 NA intron (ENSMUSG00000033066.16, intron 1 of 6) protein_coding-intron (ENSMUSG00000033066.16, intron 1 of 13) 32477 ENSMUSG00000087058.1 ENSMUSG00000087058 ENSMUST00000152963 Gm12301 antisense Interval_144243 chr7 23784336 23784983 + 0 NA Intergenic Intergenic -1957 ENSMUSG00000109318.1 ENSMUSG00000109318 ENSMUST00000207142 Gm17780 unprocessed_pseudogene Interval_66163 chr16 32066447 32067169 + 0 NA TTS (ENSMUSG00000077460.1) snoRNA-TTS (ENSMUSG00000077460.1) 898 ENSMUSG00000077460.1 ENSMUSG00000077460 ENSMUST00000104272 Gm26419 snoRNA Interval_90010 chr2 27300869 27301135 + 0 NA intron (ENSMUSG00000009621.18, intron 4 of 29) protein_coding-intron (ENSMUSG00000009621.18, intron 5 of 27) -25702 ENSMUSG00000086669.1 ENSMUSG00000086669 ENSMUST00000156020 AA645442 antisense Interval_73656 chr17 42476169 42476981 + 0 NA intron (ENSMUSG00000042256.5, intron 2 of 2) protein_coding-intron (ENSMUSG00000042256.5, intron 3 of 3) 134820 ENSMUSG00000043972.8 ENSMUSG00000043972 ENSMUST00000068355 Opn5 protein_coding Interval_100064 chr2 166887710 166887951 + 0 NA intron (ENSMUSG00000074582.10, intron 35 of 38) protein_coding-intron (ENSMUSG00000074582.10, intron 35 of 38) -18210 ENSMUSG00000002718.14 ENSMUSG00000002718 ENSMUST00000129061 Cse1l protein_coding Interval_105809 chr3 89449017 89450250 + 0 NA exon (ENSMUSG00000042613.9, exon 11 of 11) protein_coding-exon (ENSMUSG00000042613.9, exon 11 of 11) -4908 ENSMUSG00000027952.16 ENSMUSG00000027952 ENSMUST00000184515 Pmvk protein_coding Interval_44764 chr13 48398170 48398366 + 0 NA intron (ENSMUSG00000114695.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000114695.1, intron 1 of 2) 10244 ENSMUSG00000114695.1 ENSMUSG00000114695 ENSMUST00000225569 Gm48648 lincRNA Interval_143159 chr7 3988378 3988844 + 0 NA Intergenic Intergenic -4426 ENSMUSG00000083344.2 ENSMUSG00000083344 ENSMUST00000119883 Gm7363 processed_pseudogene Interval_170220 chr9 106280391 106281733 + 0 NA promoter-TSS (ENSMUSG00000023345.17) protein_coding-promoter-TSS (ENSMUSG00000023345.17) -548 ENSMUSG00000023345.17 ENSMUSG00000023345 ENSMUST00000186366 Poc1a protein_coding Interval_173793 chrX 104320349 104320588 + 0 NA intron (ENSMUSG00000031333.7, intron 4 of 15) protein_coding-intron (ENSMUSG00000031333.7, intron 4 of 15) 27766 ENSMUSG00000083327.1 ENSMUSG00000083327 ENSMUST00000120233 Vcp-rs processed_pseudogene Interval_8577 chr1 143253330 143253542 + 0 NA Intergenic Intergenic -158820 ENSMUSG00000101795.2 ENSMUSG00000101795 ENSMUST00000185806 Gm5835 processed_pseudogene Interval_73012 chr17 34128779 34129355 + 0 NA intron (ENSMUSG00000118026.1, intron 1 of 1) protein_coding-intron (ENSMUSG00000037649.10, intron 1 of 5) 343 ENSMUSG00000118026.1 ENSMUSG00000118026 ENSMUST00000236447 Gm50335 antisense Interval_75882 chr17 72634821 72635796 + 0 NA Intergenic Intergenic -31001 ENSMUSG00000055471.7 ENSMUSG00000055471 ENSMUST00000232804 Alk protein_coding Interval_162551 chr9 4192791 4193461 + 0 NA Intergenic Intergenic -20796 ENSMUSG00000110691.1 ENSMUSG00000110691 ENSMUST00000211927 Gm5363 processed_pseudogene Interval_64845 chr16 16472905 16474177 + 0 NA exon (ENSMUSG00000022788.16, exon 7 of 7) protein_coding-exon (ENSMUSG00000022788.16, exon 7 of 7) -68782 ENSMUSG00000089861.1 ENSMUSG00000089861 ENSMUST00000160015 Gm16139 processed_pseudogene Interval_156168 chr8 45427789 45428703 + 0 NA Intergenic Intergenic -17628 ENSMUSG00000031639.12 ENSMUSG00000031639 ENSMUST00000210354 Tlr3 protein_coding Interval_118983 chr4 134856438 134856855 + 0 NA Intergenic Intergenic -23164 ENSMUSG00000028825.7 ENSMUSG00000028825 ENSMUST00000136163 Rhd protein_coding Interval_142977 chr6 147951550 147951733 + 0 NA Intergenic Intergenic 95698 ENSMUSG00000086777.3 ENSMUSG00000086777 ENSMUST00000149815 Far2os2 antisense Interval_80407 chr18 41908771 41909015 + 0 NA intron (ENSMUSG00000056671.7, intron 5 of 6) protein_coding-intron (ENSMUSG00000056671.7, intron 5 of 5) -13580 ENSMUSG00000118266.1 ENSMUSG00000118266 ENSMUST00000235276 Gm18371 processed_pseudogene Interval_106643 chr3 98030863 98031192 + 0 NA exon (ENSMUSG00000105728.1, exon 1 of 1) TEC-exon (ENSMUSG00000105728.1, exon 1 of 1) 340 ENSMUSG00000105728.1 ENSMUSG00000105728 ENSMUST00000199630 Gm42819 TEC Interval_131272 chr5 136101276 136102758 + 0 NA TTS (ENSMUSG00000086656.1) antisense-TTS (ENSMUSG00000086656.1) 2419 ENSMUSG00000086656.1 ENSMUSG00000086656 ENSMUST00000129559 Gm15701 antisense Interval_46896 chr13 73268335 73269246 + 0 NA exon (ENSMUSG00000021604.15, exon 6 of 6) protein_coding-exon (ENSMUSG00000021604.15, exon 6 of 6) -4440 ENSMUSG00000113485.1 ENSMUSG00000113485 ENSMUST00000223190 Gm48000 TEC Interval_57930 chr15 25539061 25539810 + 0 NA intron (ENSMUSG00000115204.1, intron 3 of 5) lincRNA-intron (ENSMUSG00000115204.1, intron 3 of 5) 53656 ENSMUSG00000115204.1 ENSMUSG00000115204 ENSMUST00000228618 Gm36642 lincRNA Interval_119299 chr4 136727038 136727255 + 0 NA intron (ENSMUSG00000028664.14, intron 3 of 15) protein_coding-intron (ENSMUSG00000028664.14, intron 3 of 15) -33106 ENSMUSG00000028664.14 ENSMUSG00000028664 ENSMUST00000144573 Ephb2 protein_coding Interval_99074 chr2 157018858 157019489 + 0 NA intron (ENSMUSG00000055485.6, intron 14 of 14) protein_coding-intron (ENSMUSG00000055485.6, intron 14 of 14) 8299 ENSMUSG00000055485.6 ENSMUSG00000055485 ENSMUST00000133571 Soga1 protein_coding Interval_168667 chr9 85689395 85689766 + 0 NA intron (ENSMUSG00000035941.15, intron 27 of 27) protein_coding-intron (ENSMUSG00000035941.15, intron 28 of 28) 28958 ENSMUSG00000035941.15 ENSMUSG00000035941 ENSMUST00000186447 Ibtk protein_coding Interval_144982 chr7 29259270 29260590 + 0 NA intron (ENSMUSG00000074227.12, intron 2 of 5) protein_coding-intron (ENSMUSG00000074227.12, intron 3 of 6) 5260 ENSMUSG00000074227.12 ENSMUSG00000074227 ENSMUST00000208585 Spint2 protein_coding Interval_40186 chr12 102403348 102404304 + 0 NA intron (ENSMUSG00000021190.14, intron 2 of 5) protein_coding-intron (ENSMUSG00000021190.14, intron 5 of 13) 2320 ENSMUSG00000021190.14 ENSMUSG00000021190 ENSMUST00000146499 Lgmn protein_coding Interval_144817 chr7 28423716 28424565 + 0 NA intron (ENSMUSG00000109336.1, intron 1 of 12) protein_coding-intron (ENSMUSG00000109336.1, intron 1 of 12) -10233 ENSMUSG00000109336.1 ENSMUSG00000109336 ENSMUST00000208676 Samd4b protein_coding Interval_158755 chr8 85919828 85920465 + 0 NA intron (ENSMUSG00000036879.15, intron 6 of 6) protein_coding-intron (ENSMUSG00000036879.15, intron 7 of 31) -65709 ENSMUSG00000090043.1 ENSMUSG00000090043 ENSMUST00000160428 Gm16167 processed_pseudogene Interval_127698 chr5 106787776 106788096 + 0 NA Intergenic Intergenic -49172 ENSMUSG00000106301.1 ENSMUSG00000106301 ENSMUST00000197334 Gm8365 processed_pseudogene Interval_11043 chr1 178748220 178749114 + 0 NA intron (ENSMUSG00000026494.12, intron 4 of 14) protein_coding-intron (ENSMUSG00000026494.12, intron 4 of 14) -7141 ENSMUSG00000102922.1 ENSMUSG00000102922 ENSMUST00000192621 Gm34176 processed_pseudogene Interval_45887 chr13 58806216 58808819 + 0 NA promoter-TSS (ENSMUSG00000055254.15) protein_coding-promoter-TSS (ENSMUSG00000055254.15) -4636 ENSMUSG00000114448.1 ENSMUSG00000114448 ENSMUST00000225162 C630044B11Rik TEC Interval_12759 chr10 4992707 4993373 + 0 NA intron (ENSMUSG00000019768.16, intron 3 of 4) protein_coding-intron (ENSMUSG00000019768.16, intron 7 of 8) 43416 ENSMUSG00000093189.1 ENSMUSG00000093189 ENSMUST00000175448 Gm25694 ribozyme Interval_136346 chr6 53563806 53564966 + 0 NA intron (ENSMUSG00000053007.9, intron 4 of 5) protein_coding-intron (ENSMUSG00000053007.9, intron 5 of 10) -103384 ENSMUSG00000108004.1 ENSMUSG00000108004 ENSMUST00000204451 Gm44080 TEC Interval_66147 chr16 31943910 31944537 + 0 NA exon (ENSMUSG00000045625.5, exon 3 of 3) protein_coding-exon (ENSMUSG00000045625.5, exon 3 of 3) 4271 ENSMUSG00000107002.1 ENSMUSG00000107002 ENSMUST00000202722 0610012G03Rik protein_coding Interval_59442 chr15 53190166 53190608 + 0 NA intron (ENSMUSG00000061731.9, intron 1 of 10) protein_coding-intron (ENSMUSG00000061731.9, intron 1 of 10) -82519 ENSMUSG00000061731.9 ENSMUSG00000061731 ENSMUST00000140798 Ext1 protein_coding Interval_61420 chr15 81523594 81524620 + 0 NA Intergenic Intergenic -24562 ENSMUSG00000091198.2 ENSMUSG00000091198 ENSMUST00000172270 Gm5218 processed_pseudogene Interval_122188 chr5 19235371 19235894 + 0 NA intron (ENSMUSG00000040003.18, intron 1 of 2) protein_coding-intron (ENSMUSG00000040003.18, intron 1 of 22) -9464 ENSMUSG00000097626.5 ENSMUSG00000097626 ENSMUST00000197496 4921504A21Rik antisense Interval_4849 chr1 80230752 80231045 + 0 NA Intergenic Intergenic 5854 ENSMUSG00000101257.1 ENSMUSG00000101257 ENSMUST00000191452 2310015K22Rik lincRNA Interval_25417 chr11 48023060 48023250 + 0 NA Intergenic Intergenic -110610 ENSMUSG00000065804.1 ENSMUSG00000065804 ENSMUST00000083870 Gm23039 snRNA Interval_12555 chr1 195265492 195265686 + 0 NA Intergenic Intergenic -5741 ENSMUSG00000104297.1 ENSMUSG00000104297 ENSMUST00000192733 Gm38046 TEC Interval_58376 chr15 34003082 34003308 + 0 NA Intergenic Intergenic -9457 ENSMUSG00000115605.1 ENSMUSG00000115605 ENSMUST00000228920 Gm9643 processed_pseudogene Interval_62850 chr15 97410657 97411726 + 0 NA Intergenic Intergenic 49989 ENSMUSG00000044250.8 ENSMUSG00000044250 ENSMUST00000226495 Pced1b protein_coding Interval_169540 chr9 98979472 98980260 + 0 NA Intergenic Intergenic -6535 ENSMUSG00000032463.10 ENSMUSG00000032463 ENSMUST00000185472 Faim protein_coding Interval_39475 chr12 88182670 88183141 + 0 NA promoter-TSS (ENSMUSG00000066027.7) protein_coding-promoter-TSS (ENSMUSG00000066027.7) -1109 ENSMUSG00000066027.7 ENSMUSG00000066027 ENSMUST00000223172 Gm10436 protein_coding Interval_12436 chr1 193449457 193451038 + 0 NA Intergenic Intergenic -25043 ENSMUSG00000102648.1 ENSMUSG00000102648 ENSMUST00000191762 Gm38022 processed_pseudogene Interval_106472 chr3 96568765 96570318 + 0 NA Intergenic Intergenic -2740 ENSMUSG00000074398.5 ENSMUSG00000074398 ENSMUST00000107095 Gm15441 antisense Interval_126990 chr5 99225806 99226503 + 0 NA intron (ENSMUSG00000089809.9, intron 13 of 16) protein_coding-intron (ENSMUSG00000089809.9, intron 10 of 13) -47941 ENSMUSG00000105686.1 ENSMUSG00000105686 ENSMUST00000196434 Gm35394 lincRNA Interval_118206 chr4 129528479 129529837 + 0 NA promoter-TSS (ENSMUSG00000028800.15) protein_coding-promoter-TSS (ENSMUSG00000028800.15) -4574 ENSMUSG00000028800.15 ENSMUSG00000028800 ENSMUST00000139305 Hdac1 protein_coding Interval_40700 chr12 107588198 107588418 + 0 NA Intergenic Intergenic -24692 ENSMUSG00000079359.2 ENSMUSG00000079359 ENSMUST00000165520 Gm9006 processed_pseudogene Interval_147228 chr7 64830081 64831351 + 0 NA intron (ENSMUSG00000030518.17, intron 2 of 3) protein_coding-intron (ENSMUSG00000030518.17, intron 3 of 9) 42281 ENSMUSG00000070520.4 ENSMUSG00000070520 ENSMUST00000094331 Nsmce3 protein_coding Interval_74346 chr17 49205139 49205394 + 0 NA Intergenic Intergenic -39508 ENSMUSG00000117115.1 ENSMUSG00000117115 ENSMUST00000233339 Gm9586 processed_pseudogene Interval_2186 chr1 36913727 36914592 + 0 NA intron (ENSMUSG00000102930.1, intron 1 of 1) protein_coding-intron (ENSMUSG00000026116.11, intron 1 of 40) 2380 ENSMUSG00000102930.1 ENSMUSG00000102930 ENSMUST00000194317 Gm38115 sense_intronic Interval_300 chr1 3147551 3147727 + 0 NA Intergenic Intergenic 45623 ENSMUSG00000064842.1 ENSMUSG00000064842 ENSMUST00000082908 Gm26206 snRNA Interval_68242 chr16 70718201 70718556 + 0 NA Intergenic Intergenic 29344 ENSMUSG00000116742.1 ENSMUSG00000116742 ENSMUST00000232475 Gm49665 processed_pseudogene Interval_135202 chr6 37457847 37458805 + 0 NA Intergenic Intergenic -81355 ENSMUSG00000038641.12 ENSMUSG00000038641 ENSMUST00000123648 Akr1d1 protein_coding Interval_125069 chr5 64242068 64242298 + 0 NA intron (ENSMUSG00000029174.18, intron 1 of 18) protein_coding-intron (ENSMUSG00000029174.18, intron 2 of 21) 8253 ENSMUSG00000104947.1 ENSMUSG00000104947 ENSMUST00000199677 Gm43721 TEC Interval_70371 chr17 9186172 9186394 + 0 NA Intergenic Intergenic -2864 ENSMUSG00000117026.1 ENSMUSG00000117026 ENSMUST00000233515 C87487 lincRNA Interval_150516 chr7 111720809 111721984 + 0 NA intron (ENSMUSG00000038296.14, intron 1 of 10) protein_coding-intron (ENSMUSG00000038296.14, intron 1 of 10) 58581 ENSMUSG00000038296.14 ENSMUSG00000038296 ENSMUST00000106663 Galnt18 protein_coding Interval_31936 chr11 103946301 103947327 + 0 NA intron (ENSMUSG00000034187.18, intron 1 of 8) protein_coding-intron (ENSMUSG00000034187.18, intron 1 of 20) -32775 ENSMUSG00000062421.13 ENSMUSG00000062421 ENSMUST00000154089 Arf2 protein_coding Interval_32218 chr11 106240295 106240879 + 0 NA intron (ENSMUSG00000020705.6, intron 13 of 17) protein_coding-intron (ENSMUSG00000020705.6, intron 13 of 17) 3591 ENSMUSG00000020705.6 ENSMUSG00000020705 ENSMUST00000152860 Ddx42 protein_coding Interval_110305 chr3 156398300 156398784 + 0 NA Intergenic Intergenic 133956 ENSMUSG00000104573.1 ENSMUSG00000104573 ENSMUST00000199214 Gm42886 processed_pseudogene Interval_137979 chr6 83899876 83900348 + 0 NA intron (ENSMUSG00000030016.14, intron 1 of 3) protein_coding-intron (ENSMUSG00000030016.14, intron 1 of 3) 3153 ENSMUSG00000107991.1 ENSMUSG00000107991 ENSMUST00000204303 Gm43919 processed_pseudogene Interval_92902 chr2 68330237 68330442 + 0 NA intron (ENSMUSG00000027030.15, intron 3 of 10) protein_coding-intron (ENSMUSG00000027030.15, intron 10 of 17) 56342 ENSMUSG00000027030.15 ENSMUSG00000027030 ENSMUST00000149581 Stk39 protein_coding Interval_56648 chr14 121136877 121137406 + 0 NA intron (ENSMUSG00000025555.14, intron 1 of 7) protein_coding-intron (ENSMUSG00000025555.14, intron 2 of 26) 35062 ENSMUSG00000025555.14 ENSMUSG00000025555 ENSMUST00000137971 Farp1 protein_coding Interval_23018 chr11 18957034 18958458 + 0 NA intron (ENSMUSG00000020160.18, intron 7 of 11) protein_coding-intron (ENSMUSG00000020160.18, intron 7 of 12) 48727 ENSMUSG00000103828.1 ENSMUSG00000103828 ENSMUST00000193315 2610001A08Rik TEC Interval_12769 chr10 5188141 5189409 + 0 NA intron (ENSMUSG00000096054.3, intron 2 of 24) protein_coding-intron (ENSMUSG00000096054.3, intron 92 of 145) -3249 ENSMUSG00000096054.3 ENSMUSG00000096054 ENSMUST00000214945 Syne1 protein_coding Interval_61732 chr15 83635182 83635706 + 0 NA intron (ENSMUSG00000016763.15, intron 7 of 21) protein_coding-intron (ENSMUSG00000016763.15, intron 8 of 22) -21705 ENSMUSG00000016763.15 ENSMUSG00000016763 ENSMUST00000229057 Scube1 protein_coding Interval_170819 chr9 110964974 110965777 + 0 NA intron (ENSMUSG00000032495.8, intron 3 of 4) protein_coding-intron (ENSMUSG00000032495.8, intron 4 of 8) -9057 ENSMUSG00000106234.1 ENSMUSG00000106234 ENSMUST00000197846 Gm43535 TEC Interval_72818 chr17 32363872 32365422 + 0 NA promoter-TSS (ENSMUSG00000024050.18) protein_coding-promoter-TSS (ENSMUSG00000024050.18) 23041 ENSMUSG00000024050.18 ENSMUSG00000024050 ENSMUST00000170603 Wiz protein_coding Interval_70429 chr17 10169687 10170006 + 0 NA Intergenic Intergenic 149515 ENSMUSG00000062078.15 ENSMUSG00000062078 ENSMUST00000233684 Qk protein_coding Interval_171175 chr9 114977742 114979446 + 0 NA promoter-TSS (ENSMUSG00000040875.12) protein_coding-promoter-TSS (ENSMUSG00000040875.12) 4145 ENSMUSG00000050621.7 ENSMUSG00000050621 ENSMUST00000053150 Rps27rt protein_coding Interval_54904 chr14 76138001 76139136 + 0 NA Intergenic Intergenic 27677 ENSMUSG00000022009.1 ENSMUSG00000022009 ENSMUST00000022586 Nufip1 protein_coding Interval_53783 chr14 61723622 61723937 + 0 NA Intergenic Intergenic 40269 ENSMUSG00000104187.1 ENSMUSG00000104187 ENSMUST00000194021 Gm37820 TEC Interval_44837 chr13 48994947 48995439 + 0 NA Intergenic Intergenic -27176 ENSMUSG00000038014.7 ENSMUSG00000038014 ENSMUST00000060805 Fam120a protein_coding Interval_129107 chr5 117442385 117442651 + 0 NA intron (ENSMUSG00000061578.8, intron 1 of 20) protein_coding-intron (ENSMUSG00000061578.8, intron 1 of 3) 28518 ENSMUSG00000061578.8 ENSMUSG00000061578 ENSMUST00000180430 Ksr2 protein_coding Interval_83433 chr18 85422440 85422628 + 0 NA Intergenic Intergenic 294191 ENSMUSG00000117854.1 ENSMUSG00000117854 ENSMUST00000237113 Gm7612 processed_pseudogene Interval_14782 chr10 39795131 39796542 + 0 NA intron (ENSMUSG00000019841.15, intron 5 of 32) protein_coding-intron (ENSMUSG00000019841.15, intron 4 of 31) -42968 ENSMUSG00000081608.1 ENSMUSG00000081608 ENSMUST00000122161 Gm16210 processed_pseudogene Interval_71171 chr17 20753053 20753422 + 0 NA Intergenic Intergenic 23394 ENSMUSG00000067951.5 ENSMUSG00000067951 ENSMUST00000088829 Vmn1r227 protein_coding Interval_153218 chr7 142532717 142533830 + 0 NA promoter-TSS (ENSMUSG00000037772.13) protein_coding-promoter-TSS (ENSMUSG00000037772.13) 112 ENSMUSG00000037772.13 ENSMUSG00000037772 ENSMUST00000141098 Mrpl23 protein_coding Interval_154974 chr8 25411467 25411844 + 0 NA intron (ENSMUSG00000110172.1, intron 2 of 2) transcribed_processed_pseudogene-intron (ENSMUSG00000110172.1, intron 2 of 2) 12635 ENSMUSG00000110172.1 ENSMUSG00000110172 ENSMUST00000211376 Gm39147 transcribed_processed_pseudogene Interval_101007 chr2 174198693 174199601 + 0 NA Intergenic Intergenic -48781 ENSMUSG00000098467.1 ENSMUSG00000098467 ENSMUST00000184218 Gm27591 miRNA Interval_52043 chr14 34810742 34811403 + 0 NA Intergenic Intergenic -41017 ENSMUSG00000115109.1 ENSMUSG00000115109 ENSMUST00000228194 Gm49032 lincRNA Interval_170922 chr9 112201484 112201692 + 0 NA intron (ENSMUSG00000032503.18, intron 1 of 1) protein_coding-intron (ENSMUSG00000032503.18, intron 1 of 18) -13662 ENSMUSG00000032503.18 ENSMUSG00000032503 ENSMUST00000162050 Arpp21 protein_coding Interval_46520 chr13 66797474 66797913 + 0 NA intron (ENSMUSG00000114353.1, intron 1 of 3) transcribed_processed_pseudogene-intron (ENSMUSG00000114353.1, intron 1 of 3) -1604 ENSMUSG00000114314.1 ENSMUSG00000114314 ENSMUST00000224105 Gm48413 processed_pseudogene Interval_136126 chr6 51369424 51370684 + 0 NA Intergenic Intergenic -9656 ENSMUSG00000107660.1 ENSMUSG00000107660 ENSMUST00000204678 Gm6559 lincRNA Interval_4956 chr1 82946451 82946727 + 0 NA Intergenic Intergenic -3201 ENSMUSG00000113084.1 ENSMUSG00000113084 ENSMUST00000222600 A030003K21Rik protein_coding Interval_96513 chr2 125212086 125212374 + 0 NA intron (ENSMUSG00000086416.1, intron 1 of 2) protein_coding-intron (ENSMUSG00000027202.12, intron 20 of 26) 5282 ENSMUSG00000086416.1 ENSMUSG00000086416 ENSMUST00000123574 Gm14002 antisense Interval_110908 chr4 9993559 9994365 + 0 NA Intergenic Intergenic 34608 ENSMUSG00000082501.1 ENSMUSG00000082501 ENSMUST00000120635 Gm11835 processed_pseudogene Interval_102698 chr3 30305158 30305405 + 0 NA intron (ENSMUSG00000027684.16, intron 2 of 8) protein_coding-intron (ENSMUSG00000027684.16, intron 1 of 11) -30896 ENSMUSG00000103870.1 ENSMUSG00000103870 ENSMUST00000192999 Gm38362 TEC Interval_110212 chr3 154359106 154359927 + 0 NA Intergenic Intergenic 27519 ENSMUSG00000093738.2 ENSMUSG00000093738 ENSMUST00000181234 AI606473 processed_transcript Interval_135927 chr6 48815333 48815879 + 0 NA Intergenic Intergenic -3418 ENSMUSG00000107574.1 ENSMUSG00000107574 ENSMUST00000204322 Gm17834 processed_pseudogene Interval_33106 chr11 114472289 114473314 + 0 NA Intergenic Intergenic -23941 ENSMUSG00000062391.3 ENSMUSG00000062391 ENSMUST00000141088 4932435O22Rik lincRNA Interval_30128 chr11 89485547 89485868 + 0 NA intron (ENSMUSG00000047773.15, intron 9 of 21) protein_coding-intron (ENSMUSG00000047773.15, intron 7 of 16) 182984 ENSMUSG00000085798.1 ENSMUSG00000085798 ENSMUST00000140754 Gm2018 lincRNA Interval_171231 chr9 115438554 115438821 + 0 NA promoter-TSS (ENSMUSG00000074034.1) processed_pseudogene-promoter-TSS (ENSMUSG00000074034.1) -106 ENSMUSG00000074034.1 ENSMUSG00000074034 ENSMUST00000075898 Gm5921 processed_pseudogene Interval_105452 chr3 86711772 86712012 + 0 NA intron (ENSMUSG00000028080.16, intron 8 of 17) protein_coding-intron (ENSMUSG00000028080.16, intron 47 of 56) -39724 ENSMUSG00000094392.1 ENSMUSG00000094392 ENSMUST00000119949 Gm3788 processed_pseudogene Interval_80168 chr18 37996174 37996645 + 0 NA TTS (ENSMUSG00000024451.9) protein_coding-TTS (ENSMUSG00000024451.9) 2324 ENSMUSG00000024451.9 ENSMUSG00000024451 ENSMUST00000236134 Arap3 protein_coding Interval_116234 chr4 108930382 108930615 + 0 NA intron (ENSMUSG00000003411.10, intron 4 of 4) protein_coding-intron (ENSMUSG00000003411.10, intron 3 of 3) 3310 ENSMUSG00000082699.1 ENSMUSG00000082699 ENSMUST00000119330 Gm12736 processed_pseudogene Interval_35359 chr12 21027323 21028163 + 0 NA intron (ENSMUSG00000116627.1, intron 3 of 3) protein_coding-intron (ENSMUSG00000052632.16, intron 1 of 9) -15216 ENSMUSG00000092229.3 ENSMUSG00000092229 ENSMUST00000174304 Gm5977 transcribed_unprocessed_pseudogene Interval_95019 chr2 103131099 103132437 + 0 NA Intergenic Intergenic 32613 ENSMUSG00000058281.1 ENSMUSG00000058281 ENSMUST00000077233 Gm10038 pseudogene Interval_25805 chr11 51822428 51823313 + 0 NA intron (ENSMUSG00000020387.15, intron 10 of 12) protein_coding-intron (ENSMUSG00000020387.15, intron 9 of 11) 34255 ENSMUSG00000020387.15 ENSMUSG00000020387 ENSMUST00000151277 Jade2 protein_coding Interval_41931 chr13 4699674 4700108 + 0 NA intron (ENSMUSG00000113717.1, intron 2 of 6) lincRNA-intron (ENSMUSG00000113717.1, intron 2 of 6) -25568 ENSMUSG00000113717.1 ENSMUSG00000113717 ENSMUST00000222210 Gm40658 lincRNA Interval_141261 chr6 126644008 126646206 + 0 NA promoter-TSS (ENSMUSG00000047976.4) protein_coding-promoter-TSS (ENSMUSG00000047976.4) 1277 ENSMUSG00000047976.4 ENSMUSG00000047976 ENSMUST00000205171 Kcna1 protein_coding Interval_122447 chr5 22757201 22757477 + 0 NA intron (ENSMUSG00000106379.1, intron 1 of 3) lincRNA-intron (ENSMUSG00000097207.7, intron 4 of 4) -10452 ENSMUSG00000105076.1 ENSMUSG00000105076 ENSMUST00000196218 A930003O13Rik lincRNA Interval_24211 chr11 31532143 31532356 + 0 NA Intergenic Intergenic 139478 ENSMUSG00000044502.16 ENSMUSG00000044502 ENSMUST00000109415 Bod1 protein_coding Interval_44347 chr13 43971652 43972273 + 0 NA Intergenic Intergenic 23083 ENSMUSG00000113671.1 ENSMUSG00000113671 ENSMUST00000222566 Gm2233 lincRNA Interval_31524 chr11 101163230 101165349 + 0 NA exon (ENSMUSG00000035172.15, exon 11 of 13) protein_coding-exon (ENSMUSG00000035172.15, exon 11 of 13) -6234 ENSMUSG00000017167.6 ENSMUSG00000017167 ENSMUST00000103109 Cntnap1 protein_coding Interval_92633 chr2 61746167 61747789 + 0 NA intron (ENSMUSG00000026914.15, intron 3 of 6) protein_coding-intron (ENSMUSG00000026914.15, intron 3 of 11) 15491 ENSMUSG00000092660.1 ENSMUSG00000092660 ENSMUST00000174919 Gm22403 miRNA Interval_94890 chr2 100918604 100918925 + 0 NA Intergenic Intergenic -290721 ENSMUSG00000095203.1 ENSMUSG00000095203 ENSMUST00000118584 Gm13810 processed_pseudogene Interval_58778 chr15 38017176 38017668 + 0 NA intron (ENSMUSG00000037487.7, intron 20 of 58) protein_coding-intron (ENSMUSG00000037487.7, intron 20 of 58) -40863 ENSMUSG00000065852.1 ENSMUSG00000065852 ENSMUST00000083918 Gm22353 snoRNA Interval_48466 chr13 99228619 99229696 + 0 NA exon (ENSMUSG00000050919.9, exon 2 of 5) protein_coding-exon (ENSMUSG00000050919.9, exon 2 of 5) 44334 ENSMUSG00000050919.9 ENSMUSG00000050919 ENSMUST00000056558 Zfp366 protein_coding Interval_93758 chr2 76661398 76661926 + 0 NA Intergenic Intergenic 11454 ENSMUSG00000002732.14 ENSMUSG00000002732 ENSMUST00000147355 Fkbp7 protein_coding Interval_15119 chr10 42670301 42670953 + 0 NA intron (ENSMUSG00000038280.12, intron 2 of 6) protein_coding-intron (ENSMUSG00000038280.12, intron 2 of 5) -8339 ENSMUSG00000038280.12 ENSMUSG00000038280 ENSMUST00000154048 Ostm1 protein_coding Interval_64353 chr16 10739957 10740493 + 0 NA intron (ENSMUSG00000068663.14, intron 14 of 14) protein_coding-intron (ENSMUSG00000068663.14, intron 23 of 23) 45311 ENSMUSG00000038037.5 ENSMUSG00000038037 ENSMUST00000038099 Socs1 protein_coding Interval_4417 chr1 74027739 74028097 + 0 NA intron (ENSMUSG00000055322.16, intron 3 of 32) protein_coding-intron (ENSMUSG00000055322.16, intron 3 of 34) 70758 ENSMUSG00000055322.16 ENSMUSG00000055322 ENSMUST00000190599 Tns1 protein_coding Interval_16569 chr10 64060868 64061118 + 0 NA intron (ENSMUSG00000042846.8, intron 1 of 1) protein_coding-intron (ENSMUSG00000060843.11, intron 6 of 16) 29254 ENSMUSG00000042846.8 ENSMUSG00000042846 ENSMUST00000133588 Lrrtm3 protein_coding Interval_52266 chr14 41154547 41154779 + 0 NA intron (ENSMUSG00000037780.3, intron 3 of 4) protein_coding-intron (ENSMUSG00000037780.3, intron 3 of 4) 3205 ENSMUSG00000037780.3 ENSMUSG00000037780 ENSMUST00000047095 Mbl1 protein_coding Interval_67437 chr16 48627419 48627847 + 0 NA exon (ENSMUSG00000022652.7, exon 6 of 6) protein_coding-exon (ENSMUSG00000022652.7, exon 6 of 6) 122815 ENSMUSG00000116640.1 ENSMUSG00000116640 ENSMUST00000231404 Gm8670 processed_pseudogene Interval_97521 chr2 138436963 138437197 + 0 NA intron (ENSMUSG00000062098.11, intron 2 of 3) protein_coding-intron (ENSMUSG00000062098.11, intron 2 of 5) -152312 ENSMUSG00000085911.1 ENSMUSG00000085911 ENSMUST00000155923 Gm14061 lincRNA Interval_70201 chr17 6131817 6132815 + 0 NA promoter-TSS (ENSMUSG00000058542.3) processed_pseudogene-promoter-TSS (ENSMUSG00000058542.3) 89 ENSMUSG00000058542.3 ENSMUSG00000058542 ENSMUST00000078419 Gm15590 processed_pseudogene Interval_153323 chr7 143612014 143613263 + 0 NA intron (ENSMUSG00000045362.8, intron 5 of 7) protein_coding-intron (ENSMUSG00000045362.8, intron 5 of 7) 12504 ENSMUSG00000086828.1 ENSMUSG00000086828 ENSMUST00000141299 Gm15579 antisense Interval_50870 chr14 20341668 20341862 + 0 NA intron (ENSMUSG00000021810.3, intron 2 of 4) protein_coding-intron (ENSMUSG00000021810.3, intron 3 of 13) 6285 ENSMUSG00000021810.3 ENSMUSG00000021810 ENSMUST00000224412 Ecd protein_coding Interval_73193 chr17 35509261 35510052 + 0 NA intron (ENSMUSG00000024406.16, intron 2 of 2) protein_coding-intron (ENSMUSG00000024406.16, intron 3 of 4) 835 ENSMUSG00000024406.16 ENSMUSG00000024406 ENSMUST00000174782 Pou5f1 protein_coding Interval_67506 chr16 49992688 49993512 + 0 NA Intergenic Intergenic -117973 ENSMUSG00000098028.1 ENSMUSG00000098028 ENSMUST00000182962 Gm8824 processed_pseudogene Interval_4090 chr1 67982759 67983476 + 0 NA Intergenic Intergenic 9441 ENSMUSG00000096031.1 ENSMUSG00000096031 ENSMUST00000178954 Gm23189 miRNA Interval_3195 chr1 54660897 54661308 + 0 NA exon (ENSMUSG00000052331.14, exon 21 of 28) protein_coding-exon (ENSMUSG00000052331.14, exon 21 of 28) -12489 ENSMUSG00000052331.14 ENSMUSG00000052331 ENSMUST00000177679 Ankrd44 protein_coding Interval_21935 chr11 5284022 5284341 + 0 NA intron (ENSMUSG00000041961.14, intron 7 of 8) protein_coding-intron (ENSMUSG00000041961.14, intron 6 of 8) 10096 ENSMUSG00000118486.1 ENSMUSG00000118486 ENSMUST00000238466 Gm30172 unitary_pseudogene Interval_59073 chr15 43169319 43171177 + 0 NA exon (ENSMUSG00000051920.7, exon 1 of 6) protein_coding-exon (ENSMUSG00000051920.7, exon 1 of 6) 578 ENSMUSG00000051920.7 ENSMUSG00000051920 ENSMUST00000226402 Rspo2 protein_coding Interval_117308 chr4 122895885 122896299 + 0 NA Intergenic Intergenic -10228 ENSMUSG00000028656.14 ENSMUSG00000028656 ENSMUST00000151041 Cap1 protein_coding Interval_169278 chr9 96092803 96093541 + 0 NA Intergenic Intergenic -52499 ENSMUSG00000100931.1 ENSMUSG00000100931 ENSMUST00000189281 Gm28085 antisense Interval_11149 chr1 179667629 179669002 + 0 NA promoter-TSS (ENSMUSG00000038936.13) protein_coding-promoter-TSS (ENSMUSG00000038936.13) -15530 ENSMUSG00000038936.13 ENSMUSG00000038936 ENSMUST00000192611 Sccpdh protein_coding Interval_94272 chr2 87324902 87325230 + 0 NA Intergenic Intergenic -1070 ENSMUSG00000083211.1 ENSMUSG00000083211 ENSMUST00000119793 Gm13737 processed_pseudogene Interval_95219 chr2 104867202 104867907 + 0 NA promoter-TSS (ENSMUSG00000045106.12) protein_coding-promoter-TSS (ENSMUSG00000045106.12) -7648 ENSMUSG00000082934.1 ENSMUSG00000082934 ENSMUST00000119009 Gm13887 processed_pseudogene Interval_140667 chr6 120401040 120401617 + 0 NA intron (ENSMUSG00000030180.15, intron 13 of 20) protein_coding-intron (ENSMUSG00000030180.15, intron 13 of 27) -20189 ENSMUSG00000084454.1 ENSMUSG00000084454 ENSMUST00000122505 Gm24592 snRNA Interval_45827 chr13 58387890 58388632 + 0 NA Intergenic Intergenic -3036 ENSMUSG00000021550.6 ENSMUSG00000021550 ENSMUST00000022032 2210016F16Rik protein_coding Interval_122146 chr5 18178289 18178809 + 0 NA Intergenic Intergenic -171799 ENSMUSG00000104540.1 ENSMUSG00000104540 ENSMUST00000198905 Gm3527 processed_pseudogene Interval_37066 chr12 57252756 57252950 + 0 NA intron (ENSMUSG00000047022.18, intron 1 of 6) protein_coding-intron (ENSMUSG00000047022.18, intron 1 of 10) 20459 ENSMUSG00000078982.3 ENSMUSG00000078982 ENSMUST00000140773 Gm11025 processed_pseudogene Interval_41060 chr12 110860500 110861944 + 0 NA intron (ENSMUSG00000021271.5, intron 3 of 7) protein_coding-intron (ENSMUSG00000021271.5, intron 3 of 7) -2328 ENSMUSG00000091498.4 ENSMUSG00000091498 ENSMUST00000181662 Mpc1-ps processed_pseudogene Interval_45726 chr13 57313988 57314589 + 0 NA Intergenic Intergenic 37610 ENSMUSG00000114411.1 ENSMUSG00000114411 ENSMUST00000224461 Gm48176 processed_pseudogene Interval_111721 chr4 26718112 26719110 + 0 NA Intergenic Intergenic -13162 ENSMUSG00000086257.1 ENSMUSG00000086257 ENSMUST00000154459 4930548K13Rik lincRNA Interval_108895 chr3 133076399 133076766 + 0 NA intron (ENSMUSG00000028018.15, intron 3 of 9) protein_coding-intron (ENSMUSG00000028018.15, intron 3 of 11) 6546 ENSMUSG00000028018.15 ENSMUSG00000028018 ENSMUST00000197381 Gstcd protein_coding Interval_25174 chr11 44767188 44768050 + 0 NA intron (ENSMUSG00000057098.14, intron 6 of 15) protein_coding-intron (ENSMUSG00000057098.14, intron 6 of 15) -104943 ENSMUSG00000085784.1 ENSMUSG00000085784 ENSMUST00000130493 Gm12158 antisense Interval_37244 chr12 62706788 62708286 + 0 NA Intergenic Intergenic -3261 ENSMUSG00000114078.1 ENSMUSG00000114078 ENSMUST00000220692 Tspyl-ps processed_pseudogene Interval_129622 chr5 121392876 121393158 + 0 NA intron (ENSMUSG00000104985.1, intron 3 of 3) antisense-intron (ENSMUSG00000104985.1, intron 3 of 3) 7495 ENSMUSG00000106209.1 ENSMUSG00000106209 ENSMUST00000199249 Gm42918 antisense Interval_36013 chr12 33289639 33289884 + 0 NA intron (ENSMUSG00000020564.17, intron 3 of 12) protein_coding-intron (ENSMUSG00000020564.17, intron 3 of 11) -24639 ENSMUSG00000020564.17 ENSMUSG00000020564 ENSMUST00000142184 Atxn7l1 protein_coding Interval_68756 chr16 85602117 85602345 + 0 NA Intergenic Intergenic -42021 ENSMUSG00000116972.1 ENSMUSG00000116972 ENSMUST00000231765 Gm6278 processed_pseudogene Interval_162753 chr9 8522214 8522757 + 0 NA Intergenic Intergenic -21711 ENSMUSG00000031997.9 ENSMUSG00000031997 ENSMUST00000214596 Trpc6 protein_coding Interval_47076 chr13 75399282 75400732 + 0 NA Intergenic Intergenic 79380 ENSMUSG00000113821.1 ENSMUSG00000113821 ENSMUST00000221326 Gm48234 processed_pseudogene Interval_84569 chr19 12785964 12786566 + 0 NA intron (ENSMUSG00000118491.1, intron 2 of 12) protein_coding-intron (ENSMUSG00000024695.16, intron 2 of 10) 4044 ENSMUSG00000024695.16 ENSMUSG00000024695 ENSMUST00000137256 Zfp91 protein_coding Interval_38216 chr12 76410397 76411259 + 0 NA Intergenic Intergenic 6419 ENSMUSG00000059970.7 ENSMUSG00000059970 ENSMUST00000219555 Hspa2 protein_coding Interval_138618 chr6 90485815 90486752 + 0 NA promoter-TSS (ENSMUSG00000030088.15) protein_coding-promoter-TSS (ENSMUSG00000030088.15) -110 ENSMUSG00000108111.1 ENSMUSG00000108111 ENSMUST00000203807 Gm45901 lincRNA Interval_126557 chr5 90234998 90236779 + 0 NA TTS (ENSMUSG00000055204.15) protein_coding-TTS (ENSMUSG00000055204.15) -19866 ENSMUSG00000035505.14 ENSMUSG00000035505 ENSMUST00000148480 Cox18 protein_coding Interval_94722 chr2 93744543 93745352 + 0 NA intron (ENSMUSG00000027198.16, intron 9 of 11) protein_coding-intron (ENSMUSG00000027198.16, intron 8 of 13) -49623 ENSMUSG00000081353.2 ENSMUSG00000081353 ENSMUST00000119441 Gm13818 processed_pseudogene Interval_61864 chr15 84742646 84743684 + 0 NA intron (ENSMUSG00000078954.9, intron 4 of 11) protein_coding-intron (ENSMUSG00000078954.9, intron 5 of 12) -22899 ENSMUSG00000116396.1 ENSMUSG00000116396 ENSMUST00000229841 Gm20556 lincRNA Interval_109188 chr3 137779691 137780723 + 0 NA Intergenic Intergenic 3408 ENSMUSG00000099011.1 ENSMUSG00000099011 ENSMUST00000184334 Mir6380 miRNA Interval_36177 chr12 37908834 37909043 + 0 NA intron (ENSMUSG00000036095.11, intron 1 of 22) protein_coding-intron (ENSMUSG00000036095.11, intron 1 of 24) -29525 ENSMUSG00000113154.1 ENSMUSG00000113154 ENSMUST00000220862 Gm48713 TEC Interval_127824 chr5 108049824 108050925 + 0 NA Intergenic Intergenic 5542 ENSMUSG00000096920.1 ENSMUSG00000096920 ENSMUST00000180714 Rps19-ps8 processed_pseudogene Interval_35169 chr12 17747452 17748404 + 0 NA intron (ENSMUSG00000071379.2, intron 1 of 4) protein_coding-intron (ENSMUSG00000071379.2, intron 1 of 3) 19702 ENSMUSG00000071379.2 ENSMUSG00000071379 ENSMUST00000222944 Hpcal1 protein_coding Interval_164823 chr9 42240608 42241338 + 0 NA Intergenic Intergenic 23282 ENSMUSG00000032018.14 ENSMUSG00000032018 ENSMUST00000217513 Sc5d protein_coding Interval_16476 chr10 63071173 63072690 + 0 NA TTS (ENSMUSG00000112374.1) antisense-TTS (ENSMUSG00000112374.1) 3129 ENSMUSG00000112374.1 ENSMUSG00000112374 ENSMUST00000218358 Gm48072 antisense Interval_113628 chr4 57110723 57112230 + 0 NA intron (ENSMUSG00000028434.12, intron 1 of 25) protein_coding-intron (ENSMUSG00000028434.12, intron 1 of 15) -40917 ENSMUSG00000028434.12 ENSMUSG00000028434 ENSMUST00000133859 Epb41l4b protein_coding Interval_156159 chr8 45265895 45267435 + 0 NA TTS (ENSMUSG00000109764.1) protein_coding-TTS (ENSMUSG00000109764.1) -4634 ENSMUSG00000031645.4 ENSMUSG00000031645 ENSMUST00000210622 F11 protein_coding Interval_169174 chr9 95088619 95089324 + 0 NA intron (ENSMUSG00000031129.9, intron 12 of 15) protein_coding-intron (ENSMUSG00000031129.9, intron 12 of 15) -96287 ENSMUSG00000111087.1 ENSMUSG00000111087 ENSMUST00000214362 Gm47168 processed_pseudogene Interval_126494 chr5 89111497 89112332 + 0 NA intron (ENSMUSG00000060961.16, intron 8 of 25) protein_coding-intron (ENSMUSG00000060961.16, intron 7 of 24) 225428 ENSMUSG00000060961.16 ENSMUSG00000060961 ENSMUST00000134303 Slc4a4 protein_coding Interval_139946 chr6 112963180 112963418 + 0 NA Intergenic Intergenic -12914 ENSMUSG00000094189.1 ENSMUSG00000094189 ENSMUST00000117265 Gm6134 processed_pseudogene Interval_27783 chr11 69990905 69991928 + 0 NA promoter-TSS (ENSMUSG00000018567.14) protein_coding-promoter-TSS (ENSMUSG00000018567.14) -268 ENSMUSG00000018567.14 ENSMUSG00000018567 ENSMUST00000139007 Gabarap protein_coding Interval_18332 chr10 85002598 85002820 + 0 NA intron (ENSMUSG00000035620.15, intron 9 of 9) protein_coding-intron (ENSMUSG00000035620.15, intron 9 of 9) 65316 ENSMUSG00000035620.15 ENSMUSG00000035620 ENSMUST00000214820 Ric8b protein_coding Interval_76613 chr17 82463916 82464136 + 0 NA Intergenic Intergenic -53207 ENSMUSG00000117438.1 ENSMUSG00000117438 ENSMUST00000234808 Rpsa-ps7 processed_pseudogene Interval_16153 chr10 61072287 61072752 + 0 NA Intergenic Intergenic -16812 ENSMUSG00000020098.7 ENSMUSG00000020098 ENSMUST00000020298 Pcbd1 protein_coding Interval_31458 chr11 100798396 100798749 + 0 NA TTS (ENSMUSG00000020919.11) protein_coding-TTS (ENSMUSG00000020919.11) -23772 ENSMUSG00000089049.1 ENSMUSG00000089049 ENSMUST00000158424 Gm24358 misc_RNA Interval_100115 chr2 167161156 167162152 + 0 NA intron (ENSMUSG00000050556.9, intron 1 of 1) protein_coding-intron (ENSMUSG00000050556.9, intron 2 of 2) -27048 ENSMUSG00000085151.7 ENSMUSG00000085151 ENSMUST00000147446 1110018N20Rik processed_transcript Interval_124791 chr5 54053630 54053829 + 0 NA intron (ENSMUSG00000039156.19, intron 2 of 12) protein_coding-intron (ENSMUSG00000039156.19, intron 2 of 11) 41351 ENSMUSG00000107105.1 ENSMUSG00000107105 ENSMUST00000201566 Gm15820 processed_pseudogene Interval_88674 chr2 9544869 9545742 + 0 NA Intergenic Intergenic -30531 ENSMUSG00000081202.1 ENSMUSG00000081202 ENSMUST00000121535 Gm13220 processed_pseudogene Interval_89897 chr2 26304830 26305111 + 0 NA Intergenic Intergenic -10532 ENSMUSG00000048038.8 ENSMUSG00000048038 ENSMUST00000057224 Ccdc187 protein_coding Interval_11366 chr1 181250439 181251826 + 0 NA Intergenic Intergenic -8812 ENSMUSG00000081214.3 ENSMUSG00000081214 ENSMUST00000117444 Rpl35a-ps2 processed_pseudogene Interval_116502 chr4 114811558 114813184 + 0 NA Intergenic Intergenic -9351 ENSMUSG00000055198.3 ENSMUSG00000055198 ENSMUST00000137570 Gm12830 protein_coding Interval_79042 chr18 24132385 24133616 + 0 NA Intergenic Intergenic -11047 ENSMUSG00000047989.11 ENSMUSG00000047989 ENSMUST00000125169 Ino80c protein_coding Interval_67552 chr16 50736620 50737837 + 0 NA Intergenic Intergenic -4545 ENSMUSG00000022639.14 ENSMUSG00000022639 ENSMUST00000169791 Dubr lincRNA Interval_61505 chr15 82037262 82037589 + 0 NA TTS (ENSMUSG00000022471.14) protein_coding-TTS (ENSMUSG00000022471.14) 9293 ENSMUSG00000022471.14 ENSMUSG00000022471 ENSMUST00000164775 Xrcc6 protein_coding Interval_86303 chr19 38520401 38522467 + 0 NA intron (ENSMUSG00000024998.17, intron 2 of 2) protein_coding-intron (ENSMUSG00000024998.17, intron 2 of 2) -48232 ENSMUSG00000088940.1 ENSMUSG00000088940 ENSMUST00000158315 Gm24930 misc_RNA Interval_53221 chr14 55221863 55222213 + 0 NA promoter-TSS (ENSMUSG00000022209.12) protein_coding-promoter-TSS (ENSMUSG00000022209.12) -12616 ENSMUSG00000022209.12 ENSMUSG00000022209 ENSMUST00000165432 Dhrs2 protein_coding Interval_106155 chr3 93771371 93771610 + 0 NA Intergenic Intergenic -1510 ENSMUSG00000068879.4 ENSMUSG00000068879 ENSMUST00000090853 Gm5773 protein_coding Interval_121465 chr4 155983870 155984323 + 0 NA Intergenic Intergenic 8553 ENSMUSG00000050796.4 ENSMUSG00000050796 ENSMUST00000052185 B3galt6 protein_coding Interval_117832 chr4 126476126 126477076 + 0 NA promoter-TSS (ENSMUSG00000084099.1) processed_pseudogene-promoter-TSS (ENSMUSG00000084099.1) 70 ENSMUSG00000084099.1 ENSMUSG00000084099 ENSMUST00000122406 Gm12929 processed_pseudogene Interval_130345 chr5 126327959 126328678 + 0 NA Intergenic Intergenic 61336 ENSMUSG00000094875.1 ENSMUSG00000094875 ENSMUST00000178061 Gm23151 snRNA Interval_127733 chr5 107192024 107192330 + 0 NA intron (ENSMUSG00000029287.14, intron 3 of 6) protein_coding-intron (ENSMUSG00000029287.14, intron 3 of 16) -31606 ENSMUSG00000105033.1 ENSMUSG00000105033 ENSMUST00000198390 Gm43423 TEC Interval_110928 chr4 10412000 10412578 + 0 NA Intergenic Intergenic 27454 ENSMUSG00000084215.3 ENSMUSG00000084215 ENSMUST00000119515 Gm11814 processed_pseudogene Interval_98651 chr2 153848248 153849095 + 0 NA Intergenic Intergenic 22413 ENSMUSG00000027480.12 ENSMUSG00000027480 ENSMUST00000129011 Sun5 protein_coding Interval_118276 chr4 129984555 129986456 + 0 NA intron (ENSMUSG00000028782.14, intron 1 of 28) protein_coding-intron (ENSMUSG00000028782.14, intron 1 of 29) 25131 ENSMUSG00000085389.7 ENSMUSG00000085389 ENSMUST00000139884 1700003M07Rik lincRNA Interval_146148 chr7 44356650 44356858 + 0 NA exon (ENSMUSG00000038738.15, exon 23 of 23) protein_coding-exon (ENSMUSG00000038738.15, exon 23 of 23) -5810 ENSMUSG00000108509.1 ENSMUSG00000108509 ENSMUST00000205409 Gm44780 antisense Interval_98006 chr2 146611906 146613312 + 0 NA Intergenic Intergenic 69678 ENSMUSG00000085796.1 ENSMUSG00000085796 ENSMUST00000147212 4933406D12Rik lincRNA Interval_159104 chr8 90681531 90681779 + 0 NA Intergenic Intergenic 6408 ENSMUSG00000109726.1 ENSMUSG00000109726 ENSMUST00000211507 Gm45638 TEC Interval_73222 chr17 35657987 35658301 + 0 NA promoter-TSS (ENSMUSG00000038838.15) protein_coding-promoter-TSS (ENSMUSG00000038838.15) 1906 ENSMUSG00000038838.15 ENSMUSG00000038838 ENSMUST00000165144 Vars2 protein_coding Interval_19826 chr10 109807451 109807688 + 0 NA intron (ENSMUSG00000020181.18, intron 14 of 40) protein_coding-intron (ENSMUSG00000020181.18, intron 12 of 38) 158790 ENSMUSG00000112260.1 ENSMUSG00000112260 ENSMUST00000219153 3110043J17Rik TEC Interval_59597 chr15 55838473 55839043 + 0 NA intron (ENSMUSG00000060429.12, intron 1 of 1) protein_coding-intron (ENSMUSG00000060429.12, intron 1 of 6) 67552 ENSMUSG00000060429.12 ENSMUSG00000060429 ENSMUST00000140574 Sntb1 protein_coding Interval_151560 chr7 123625194 123625398 + 0 NA Intergenic Intergenic -144367 ENSMUSG00000030757.13 ENSMUSG00000030757 ENSMUST00000128217 Zkscan2 protein_coding Interval_169548 chr9 99062370 99062941 + 0 NA intron (ENSMUSG00000032462.14, intron 14 of 23) protein_coding-intron (ENSMUSG00000032462.14, intron 14 of 23) -26940 ENSMUSG00000044860.9 ENSMUSG00000044860 ENSMUST00000076730 Gm1123 protein_coding Interval_100787 chr2 172522371 172523294 + 0 NA Intergenic Intergenic -13141 ENSMUSG00000081344.5 ENSMUSG00000081344 ENSMUST00000121320 Gm14303 processed_pseudogene Interval_43896 chr13 37920082 37920928 + 0 NA intron (ENSMUSG00000039087.17, intron 8 of 8) protein_coding-intron (ENSMUSG00000039087.17, intron 7 of 11) -26511 ENSMUSG00000039087.17 ENSMUSG00000039087 ENSMUST00000162849 Rreb1 protein_coding Interval_84798 chr19 16813153 16814036 + 0 NA Intergenic Intergenic 33047 ENSMUSG00000046388.4 ENSMUSG00000046388 ENSMUST00000051080 Gm9806 pseudogene Interval_5274 chr1 87174086 87174907 + 0 NA Intergenic Intergenic -8817 ENSMUSG00000036480.9 ENSMUSG00000036480 ENSMUST00000044533 Prss56 protein_coding Interval_26338 chr11 56539482 56539755 + 0 NA Intergenic Intergenic 56669 ENSMUSG00000088228.1 ENSMUSG00000088228 ENSMUST00000157603 Gm22603 snoRNA Interval_138192 chr6 86098499 86099228 + 0 NA intron (ENSMUSG00000030000.10, intron 6 of 8) protein_coding-intron (ENSMUSG00000030000.10, intron 8 of 15) -11783 ENSMUSG00000107842.1 ENSMUSG00000107842 ENSMUST00000203624 Gm44089 antisense Interval_122361 chr5 21688740 21689496 + 0 NA promoter-TSS (ENSMUSG00000081242.1) processed_pseudogene-promoter-TSS (ENSMUSG00000081242.1) -423 ENSMUSG00000081242.1 ENSMUSG00000081242 ENSMUST00000120619 Gm15719 processed_pseudogene Interval_46860 chr13 72675958 72676200 + 0 NA Intergenic Intergenic -26770 ENSMUSG00000113697.1 ENSMUSG00000113697 ENSMUST00000223069 Gm47890 TEC Interval_91073 chr2 34820915 34821169 + 0 NA TTS (ENSMUSG00000035949.15) protein_coding-TTS (ENSMUSG00000035949.15) 5165 ENSMUSG00000035949.15 ENSMUSG00000035949 ENSMUST00000126051 Fbxw2 protein_coding Interval_20198 chr10 115662373 115663241 + 0 NA Intergenic Intergenic -62479 ENSMUSG00000112099.1 ENSMUSG00000112099 ENSMUST00000219787 Gm8960 processed_pseudogene Interval_170490 chr9 108290081 108291045 + 0 NA exon (ENSMUSG00000032606.7, exon 1 of 6) protein_coding-exon (ENSMUSG00000032606.7, exon 1 of 6) 108 ENSMUSG00000032606.7 ENSMUSG00000032606 ENSMUST00000192035 Nicn1 protein_coding Interval_121043 chr4 152394156 152395512 + 0 NA intron (ENSMUSG00000028931.12, intron 14 of 16) protein_coding-intron (ENSMUSG00000028931.12, intron 12 of 14) -15966 ENSMUSG00000090057.1 ENSMUSG00000090057 ENSMUST00000161416 Gm16333 antisense Interval_48172 chr13 96983316 96984362 + 0 NA Intergenic Intergenic 31460 ENSMUSG00000113934.1 ENSMUSG00000113934 ENSMUST00000222278 Gm48609 processed_pseudogene Interval_17147 chr10 72654203 72655455 + 0 NA promoter-TSS (ENSMUSG00000019923.14) protein_coding-promoter-TSS (ENSMUSG00000019923.14) -1415 ENSMUSG00000019923.14 ENSMUSG00000019923 ENSMUST00000219352 Zwint protein_coding Interval_13176 chr10 12852653 12853490 + 0 NA intron (ENSMUSG00000019820.11, intron 2 of 17) protein_coding-intron (ENSMUSG00000019820.11, intron 1 of 73) 6983 ENSMUSG00000112698.1 ENSMUSG00000112698 ENSMUST00000219425 Gm7525 processed_pseudogene Interval_95311 chr2 106199899 106200620 + 0 NA intron (ENSMUSG00000074981.13, intron 11 of 35) transcribed_unitary_pseudogene-intron (ENSMUSG00000074981.13, intron 11 of 35) -21798 ENSMUSG00000074981.13 ENSMUSG00000074981 ENSMUST00000037284 Dcdc5 transcribed_unitary_pseudogene Interval_155792 chr8 38163900 38164100 + 0 NA intron (ENSMUSG00000039539.13, intron 1 of 9) protein_coding-intron (ENSMUSG00000039539.13, intron 1 of 7) 87286 ENSMUSG00000081517.1 ENSMUSG00000081517 ENSMUST00000117864 Gm16204 processed_pseudogene Interval_18240 chr10 84127092 84127532 + 0 NA Intergenic Intergenic -26615 ENSMUSG00000111049.1 ENSMUSG00000111049 ENSMUST00000216477 Gm34184 lincRNA Interval_62417 chr15 92243924 92244805 + 0 NA intron (ENSMUSG00000055022.14, intron 7 of 23) protein_coding-intron (ENSMUSG00000055022.14, intron 7 of 23) -99995 ENSMUSG00000097068.2 ENSMUSG00000097068 ENSMUST00000181901 Gm26760 lincRNA Interval_78429 chr18 12782626 12783258 + 0 NA intron (ENSMUSG00000044252.18, intron 2 of 12) protein_coding-intron (ENSMUSG00000044252.18, intron 18 of 27) -39683 ENSMUSG00000083332.1 ENSMUSG00000083332 ENSMUST00000121453 Gm7599 processed_pseudogene Interval_137281 chr6 71025218 71026528 + 0 NA Intergenic Intergenic 13860 ENSMUSG00000077369.1 ENSMUSG00000077369 ENSMUST00000104181 Gm23485 snRNA Interval_136127 chr6 51379279 51380529 + 0 NA exon (ENSMUSG00000107660.1, exon 1 of 3) lincRNA-exon (ENSMUSG00000107660.1, exon 1 of 3) 194 ENSMUSG00000107660.1 ENSMUSG00000107660 ENSMUST00000204678 Gm6559 lincRNA Interval_138288 chr6 86935606 86935917 + 0 NA TTS (ENSMUSG00000057230.14) protein_coding-TTS (ENSMUSG00000057230.14) -25880 ENSMUSG00000107576.1 ENSMUSG00000107576 ENSMUST00000204381 Gm44093 TEC Interval_63759 chr15 103270191 103270391 + 0 NA Intergenic Intergenic -2621 ENSMUSG00000060992.9 ENSMUSG00000060992 ENSMUST00000230893 Copz1 protein_coding Interval_51146 chr14 24144421 24145308 + 0 NA intron (ENSMUSG00000021782.14, intron 6 of 6) protein_coding-intron (ENSMUSG00000021782.14, intron 21 of 26) 5682 ENSMUSG00000021782.14 ENSMUSG00000021782 ENSMUST00000169880 Dlg5 protein_coding Interval_91731 chr2 48899481 48899759 + 0 NA exon (ENSMUSG00000052155.5, exon 11 of 11) protein_coding-exon (ENSMUSG00000052155.5, exon 11 of 11) 9231 ENSMUSG00000052155.5 ENSMUSG00000052155 ENSMUST00000156681 Acvr2a protein_coding Interval_143251 chr7 4751628 4753427 + 0 NA promoter-TSS (ENSMUSG00000051811.14) protein_coding-promoter-TSS (ENSMUSG00000051811.14) 496 ENSMUSG00000051811.14 ENSMUSG00000051811 ENSMUST00000182173 Cox6b2 protein_coding Interval_135039 chr6 34900798 34901387 + 0 NA intron (ENSMUSG00000058486.11, intron 6 of 13) protein_coding-intron (ENSMUSG00000058486.11, intron 6 of 14) 9741 ENSMUSG00000058486.11 ENSMUSG00000058486 ENSMUST00000134830 Wdr91 protein_coding Interval_6644 chr1 118492551 118493517 + 0 NA intron (ENSMUSG00000064302.13, intron 1 of 32) protein_coding-intron (ENSMUSG00000064302.13, intron 8 of 39) -13443 ENSMUSG00000100770.1 ENSMUSG00000100770 ENSMUST00000190678 Gm28466 processed_pseudogene Interval_148815 chr7 88429736 88430782 + 0 NA promoter-TSS (ENSMUSG00000030559.8) protein_coding-promoter-TSS (ENSMUSG00000030559.8) -135 ENSMUSG00000030559.8 ENSMUSG00000030559 ENSMUST00000208478 Rab38 protein_coding Interval_127642 chr5 106042359 106042903 + 0 NA Intergenic Intergenic 29802 ENSMUSG00000095052.1 ENSMUSG00000095052 ENSMUST00000180111 Gm25672 snRNA Interval_133693 chr6 8755711 8755967 + 0 NA intron (ENSMUSG00000062995.12, intron 1 of 10) protein_coding-intron (ENSMUSG00000062995.12, intron 2 of 13) 2560 ENSMUSG00000062995.12 ENSMUSG00000062995 ENSMUST00000151758 Ica1 protein_coding Interval_118599 chr4 132706909 132707626 + 0 NA intron (ENSMUSG00000028886.15, intron 2 of 4) protein_coding-intron (ENSMUSG00000028886.15, intron 11 of 14) 25261 ENSMUSG00000037752.4 ENSMUSG00000037752 ENSMUST00000143642 Xkr8 protein_coding Interval_127160 chr5 100708359 100708738 + 0 NA intron (ENSMUSG00000035273.14, intron 3 of 10) protein_coding-intron (ENSMUSG00000035273.14, intron 3 of 11) 11157 ENSMUSG00000035273.14 ENSMUSG00000035273 ENSMUST00000112908 Hpse protein_coding Interval_55152 chr14 78683814 78684612 + 0 NA intron (ENSMUSG00000034731.11, intron 2 of 29) protein_coding-intron (ENSMUSG00000034731.11, intron 1 of 28) -19597 ENSMUSG00000115107.1 ENSMUSG00000115107 ENSMUST00000228480 Gm18368 processed_pseudogene Interval_25410 chr11 47794014 47794781 + 0 NA intron (ENSMUSG00000020354.15, intron 1 of 2) protein_coding-intron (ENSMUSG00000020354.15, intron 1 of 2) 118148 ENSMUSG00000065804.1 ENSMUSG00000065804 ENSMUST00000083870 Gm23039 snRNA Interval_171860 chr9 121830199 121831692 + 0 NA exon (ENSMUSG00000079235.10, exon 3 of 16) protein_coding-exon (ENSMUSG00000079235.10, exon 3 of 16) 10656 ENSMUSG00000092042.1 ENSMUSG00000092042 ENSMUST00000152043 Gm17163 antisense Interval_109187 chr3 137777868 137778752 + 0 NA Intergenic Intergenic 5305 ENSMUSG00000099011.1 ENSMUSG00000099011 ENSMUST00000184334 Mir6380 miRNA Interval_103116 chr3 35481986 35482756 + 0 NA Intergenic Intergenic 55429 ENSMUSG00000106496.1 ENSMUSG00000106496 ENSMUST00000199038 Gm7733 processed_pseudogene Interval_46868 chr13 72863848 72864113 + 0 NA Intergenic Intergenic -47217 ENSMUSG00000113082.1 ENSMUSG00000113082 ENSMUST00000223149 D730050B12Rik lincRNA Interval_68517 chr16 78335159 78335730 + 0 NA intron (ENSMUSG00000022863.15, intron 3 of 3) protein_coding-intron (ENSMUSG00000022865.14, intron 6 of 6) 8024 ENSMUSG00000116707.1 ENSMUSG00000116707 ENSMUST00000232286 Gm49590 TEC Interval_111309 chr4 18365766 18366181 + 0 NA Intergenic Intergenic -41376 ENSMUSG00000087402.1 ENSMUSG00000087402 ENSMUST00000133363 Gm11867 processed_transcript Interval_109528 chr3 144087579 144088720 + 0 NA Intergenic Intergenic 47605 ENSMUSG00000106367.1 ENSMUSG00000106367 ENSMUST00000198202 Gm34078 lincRNA Interval_64382 chr16 10972363 10972530 + 0 NA intron (ENSMUSG00000022500.15, intron 1 of 2) protein_coding-intron (ENSMUSG00000022500.15, intron 1 of 3) 6722 ENSMUSG00000093897.1 ENSMUSG00000093897 ENSMUST00000177685 Gm26268 miRNA Interval_54475 chr14 70106302 70107162 + 0 NA intron (ENSMUSG00000022089.9, intron 2 of 5) protein_coding-intron (ENSMUSG00000022089.9, intron 1 of 8) 6594 ENSMUSG00000022089.9 ENSMUSG00000022089 ENSMUST00000228049 Bin3 protein_coding Interval_115784 chr4 104209101 104209581 + 0 NA intron (ENSMUSG00000028519.16, intron 3 of 9) protein_coding-intron (ENSMUSG00000028519.16, intron 3 of 9) 268382 ENSMUSG00000081696.2 ENSMUSG00000081696 ENSMUST00000118427 Gm12717 processed_pseudogene Interval_78231 chr18 10502651 10504056 + 0 NA TTS (ENSMUSG00000042942.18) protein_coding-TTS (ENSMUSG00000042942.18) -19888 ENSMUSG00000094111.2 ENSMUSG00000094111 ENSMUST00000179225 Nutf2-ps2 processed_pseudogene Interval_88274 chr2 3211027 3211351 + 0 NA intron (ENSMUSG00000050530.14, intron 5 of 7) protein_coding-intron (ENSMUSG00000050530.14, intron 5 of 7) -73092 ENSMUSG00000026643.16 ENSMUSG00000026643 ENSMUST00000155761 Nmt2 protein_coding Interval_43444 chr13 31004413 31005208 + 0 NA Intergenic Intergenic -4367 ENSMUSG00000082014.2 ENSMUSG00000082014 ENSMUST00000120294 Gm11371 processed_pseudogene Interval_141091 chr6 124917080 124918281 + 0 NA exon (ENSMUSG00000030122.12, exon 1 of 5) protein_coding-exon (ENSMUSG00000030122.12, exon 1 of 5) 817 ENSMUSG00000055818.2 ENSMUSG00000055818 ENSMUST00000069553 A230083G16Rik antisense Interval_89235 chr2 18264911 18265114 + 0 NA intron (ENSMUSG00000026740.12, intron 6 of 9) protein_coding-intron (ENSMUSG00000026740.12, intron 7 of 10) -15169 ENSMUSG00000083070.2 ENSMUSG00000083070 ENSMUST00000120519 Gm13350 processed_pseudogene Interval_9847 chr1 163079303 163079530 + 0 NA intron (ENSMUSG00000071890.4, intron 3 of 21) protein_coding-intron (ENSMUSG00000071890.4, intron 3 of 21) 6254 ENSMUSG00000071890.4 ENSMUSG00000071890 ENSMUST00000096608 Mroh9 protein_coding Interval_59832 chr15 59607399 59607636 + 0 NA Intergenic Intergenic -11073 ENSMUSG00000115896.1 ENSMUSG00000115896 ENSMUST00000229684 Gm36677 lincRNA Interval_36798 chr12 54125505 54127376 + 0 NA Intergenic Intergenic -19555 ENSMUSG00000112549.1 ENSMUSG00000112549 ENSMUST00000219480 Gm35818 lincRNA Interval_68077 chr16 64872146 64872585 + 0 NA Intergenic Intergenic 19663 ENSMUSG00000054604.7 ENSMUSG00000054604 ENSMUST00000136532 Cggbp1 protein_coding Interval_34240 chr11 121543293 121544861 + 0 NA promoter-TSS (ENSMUSG00000039230.14) protein_coding-promoter-TSS (ENSMUSG00000039230.14) -24744 ENSMUSG00000039238.6 ENSMUSG00000039238 ENSMUST00000092298 Zfp750 protein_coding Interval_159676 chr8 96717889 96718129 + 0 NA Intergenic Intergenic 61880 ENSMUSG00000077938.1 ENSMUSG00000077938 ENSMUST00000104745 Gm24132 miRNA Interval_127815 chr5 108004763 108005289 + 0 NA Intergenic Intergenic 2766 ENSMUSG00000084855.2 ENSMUSG00000084855 ENSMUST00000117916 Gm9850 processed_pseudogene Interval_151769 chr7 126537817 126538332 + 0 NA Intergenic Intergenic 25906 ENSMUSG00000084453.1 ENSMUSG00000084453 ENSMUST00000122504 Gm24596 snRNA Interval_29903 chr11 87638696 87639864 + 0 NA intron (ENSMUSG00000070345.3, intron 5 of 5) protein_coding-intron (ENSMUSG00000070345.3, intron 5 of 5) 22116 ENSMUSG00000070345.3 ENSMUSG00000070345 ENSMUST00000093956 Hsf5 protein_coding Interval_160497 chr8 110006479 110009929 + 0 NA Intergenic Intergenic 6120 ENSMUSG00000110561.1 ENSMUSG00000110561 ENSMUST00000212348 Gm45888 processed_pseudogene Interval_55372 chr14 86037955 86038263 + 0 NA Intergenic Intergenic -134814 ENSMUSG00000115217.1 ENSMUSG00000115217 ENSMUST00000227116 Gm32729 lincRNA Interval_3349 chr1 57343492 57343908 + 0 NA Intergenic Intergenic 33844 ENSMUSG00000097519.2 ENSMUSG00000097519 ENSMUST00000181949 4930558J18Rik lincRNA Interval_21343 chr10 128082787 128084024 + 0 NA promoter-TSS (ENSMUSG00000064778.1) snoRNA-promoter-TSS (ENSMUSG00000064778.1) -435 ENSMUSG00000111947.1 ENSMUSG00000111947 ENSMUST00000217728 Gm47438 lincRNA Interval_102036 chr3 15375051 15375309 + 0 NA intron (ENSMUSG00000095788.6, intron 5 of 5) protein_coding-intron (ENSMUSG00000095788.6, intron 5 of 5) -42878 ENSMUSG00000078783.1 ENSMUSG00000078783 ENSMUST00000108361 Gm9733 protein_coding Interval_147012 chr7 58216966 58217995 + 0 NA Intergenic Intergenic -69253 ENSMUSG00000077356.1 ENSMUSG00000077356 ENSMUST00000104168 Gm26288 snoRNA Interval_122926 chr5 27418294 27419776 + 0 NA intron (ENSMUSG00000061576.15, intron 3 of 3) protein_coding-intron (ENSMUSG00000061576.15, intron 3 of 25) 82327 ENSMUSG00000048703.9 ENSMUSG00000048703 ENSMUST00000124535 Speer4b protein_coding Interval_66343 chr16 33271926 33272245 + 0 NA intron (ENSMUSG00000022808.5, intron 5 of 12) protein_coding-intron (ENSMUSG00000022808.5, intron 5 of 13) 20643 ENSMUSG00000022808.5 ENSMUSG00000022808 ENSMUST00000231242 Snx4 protein_coding Interval_78188 chr18 9988264 9988752 + 0 NA TTS (ENSMUSG00000024287.8) protein_coding-TTS (ENSMUSG00000024287.8) 2219 ENSMUSG00000024287.8 ENSMUSG00000024287 ENSMUST00000234111 Thoc1 protein_coding Interval_74523 chr17 52875242 52875821 + 0 NA intron (ENSMUSG00000035580.10, intron 7 of 15) protein_coding-intron (ENSMUSG00000035580.10, intron 7 of 15) -74529 ENSMUSG00000035580.10 ENSMUSG00000035580 ENSMUST00000184279 Kcnh8 protein_coding Interval_48022 chr13 95327111 95328041 + 0 NA intron (ENSMUSG00000041995.8, intron 1 of 1) protein_coding-intron (ENSMUSG00000041995.8, intron 1 of 1) 809 ENSMUSG00000041995.8 ENSMUSG00000041995 ENSMUST00000222456 Zbed3 protein_coding Interval_29526 chr11 84692510 84693569 + 0 NA Intergenic Intergenic 27393 ENSMUSG00000085044.1 ENSMUSG00000085044 ENSMUST00000150735 1700109G15Rik lincRNA Interval_67647 chr16 55378623 55379370 + 0 NA Intergenic Intergenic -81010 ENSMUSG00000064310.10 ENSMUSG00000064310 ENSMUST00000143914 Zpld1 protein_coding Interval_72884 chr17 32913778 32914015 + 0 NA intron (ENSMUSG00000024292.15, intron 3 of 12) protein_coding-intron (ENSMUSG00000024292.15, intron 2 of 11) 3432 ENSMUSG00000024292.15 ENSMUSG00000024292 ENSMUST00000234797 Cyp4f14 protein_coding Interval_48682 chr13 101117517 101117789 + 0 NA Intergenic Intergenic -78407 ENSMUSG00000096722.2 ENSMUSG00000096722 ENSMUST00000179479 Hmgb1-ps9 processed_pseudogene Interval_105925 chr3 90122010 90122387 + 0 NA intron (ENSMUSG00000027939.11, intron 5 of 39) protein_coding-intron (ENSMUSG00000027939.11, intron 5 of 39) -4337 ENSMUSG00000064930.1 ENSMUSG00000064930 ENSMUST00000082996 Gm23723 snoRNA Interval_85893 chr19 32788430 32788723 + 0 NA intron (ENSMUSG00000013663.7, intron 2 of 4) protein_coding-intron (ENSMUSG00000013663.7, intron 2 of 8) -22649 ENSMUSG00000013663.7 ENSMUSG00000013663 ENSMUST00000154806 Pten protein_coding Interval_96770 chr2 127990983 127991379 + 0 NA intron (ENSMUSG00000027380.10, intron 4 of 10) protein_coding-intron (ENSMUSG00000027380.10, intron 11 of 17) -98743 ENSMUSG00000088175.1 ENSMUSG00000088175 ENSMUST00000157550 Gm23101 snRNA Interval_26927 chr11 61629708 61629930 + 0 NA Intergenic Intergenic -39227 ENSMUSG00000004837.2 ENSMUSG00000004837 ENSMUST00000155380 Grap protein_coding Interval_164649 chr9 40320973 40323279 + 0 NA intron (ENSMUSG00000040111.17, intron 3 of 18) protein_coding-intron (ENSMUSG00000040111.17, intron 4 of 19) -1206 ENSMUSG00000040111.17 ENSMUSG00000040111 ENSMUST00000129940 Gramd1b protein_coding Interval_79719 chr18 34711371 34711561 + 0 NA intron (ENSMUSG00000024366.8, intron 1 of 7) protein_coding-intron (ENSMUSG00000024366.8, intron 1 of 7) 8921 ENSMUSG00000024366.8 ENSMUSG00000024366 ENSMUST00000025224 Gfra3 protein_coding Interval_135145 chr6 36819258 36819487 + 0 NA Intergenic Intergenic -9193 ENSMUSG00000029838.11 ENSMUSG00000029838 ENSMUST00000201321 Ptn protein_coding Interval_90887 chr2 33218879 33219868 + 0 NA intron (ENSMUSG00000004105.8, intron 1 of 2) protein_coding-intron (ENSMUSG00000004105.8, intron 1 of 4) 3256 ENSMUSG00000004105.8 ENSMUSG00000004105 ENSMUST00000193373 Angptl2 protein_coding Interval_53682 chr14 60841454 60842576 + 0 NA intron (ENSMUSG00000021993.10, intron 14 of 15) protein_coding-intron (ENSMUSG00000021993.10, intron 14 of 18) 57433 ENSMUSG00000021993.10 ENSMUSG00000021993 ENSMUST00000223709 Mipep protein_coding Interval_91411 chr2 38621506 38622053 + 0 NA intron (ENSMUSG00000026750.6, intron 5 of 5) protein_coding-intron (ENSMUSG00000026750.6, intron 5 of 7) -1022 ENSMUSG00000082931.1 ENSMUSG00000082931 ENSMUST00000121784 Gm13586 processed_pseudogene Interval_93621 chr2 75054664 75055402 + 0 NA Intergenic Intergenic 82765 ENSMUSG00000087333.1 ENSMUSG00000087333 ENSMUST00000143898 Gm13652 lincRNA Interval_14183 chr10 28443410 28443625 + 0 NA intron (ENSMUSG00000019889.10, intron 7 of 14) protein_coding-intron (ENSMUSG00000019889.10, intron 7 of 31) -143476 ENSMUSG00000019889.10 ENSMUSG00000019889 ENSMUST00000220404 Ptprk protein_coding Interval_150126 chr7 107166848 107167631 + 0 NA intron (ENSMUSG00000016626.10, intron 1 of 10) protein_coding-intron (ENSMUSG00000016626.10, intron 1 of 10) -19889 ENSMUSG00000016626.10 ENSMUSG00000016626 ENSMUST00000142623 Nlrp14 protein_coding Interval_6257 chr1 104895971 104896199 + 0 NA intron (ENSMUSG00000050840.8, intron 1 of 11) protein_coding-intron (ENSMUSG00000050840.8, intron 1 of 11) -10438 ENSMUSG00000103060.1 ENSMUSG00000103060 ENSMUST00000194551 Gm36969 TEC Interval_47791 chr13 92844002 92845361 + 0 NA promoter-TSS (ENSMUSG00000021704.8) protein_coding-promoter-TSS (ENSMUSG00000021704.8) -517 ENSMUSG00000021704.8 ENSMUSG00000021704 ENSMUST00000224368 Mtx3 protein_coding Interval_159694 chr8 97842797 97843127 + 0 NA intron (ENSMUSG00000109615.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000109615.1, intron 1 of 2) 2914 ENSMUSG00000109615.1 ENSMUSG00000109615 ENSMUST00000209813 Gm39231 lincRNA Interval_124306 chr5 43807484 43808627 + 0 NA exon (ENSMUSG00000104701.1, exon 1 of 1) lincRNA-exon (ENSMUSG00000104701.1, exon 1 of 1) 688 ENSMUSG00000104701.1 ENSMUSG00000104701 ENSMUST00000199304 Gm42555 lincRNA Interval_30591 chr11 95287709 95288402 + 0 NA intron (ENSMUSG00000038909.16, intron 2 of 3) protein_coding-intron (ENSMUSG00000038909.16, intron 6 of 13) 21458 ENSMUSG00000038909.16 ENSMUSG00000038909 ENSMUST00000143171 Kat7 protein_coding Interval_88482 chr2 5477120 5478499 + 0 NA intron (ENSMUSG00000039145.16, intron 2 of 2) protein_coding-intron (ENSMUSG00000039145.16, intron 2 of 10) -125762 ENSMUSG00000082013.1 ENSMUSG00000082013 ENSMUST00000117145 Gm13216 processed_pseudogene Interval_123779 chr5 35447868 35448538 + 0 NA Intergenic Intergenic 52105 ENSMUSG00000106970.1 ENSMUSG00000106970 ENSMUST00000201640 Gm43377 TEC Interval_118547 chr4 132421682 132423075 + 0 NA promoter-TSS (ENSMUSG00000066043.13) protein_coding-promoter-TSS (ENSMUSG00000066043.13) 63 ENSMUSG00000066043.13 ENSMUSG00000066043 ENSMUST00000136711 Phactr4 protein_coding Interval_174611 chrX 160116129 160117741 + 0 NA intron (ENSMUSG00000031303.8, intron 22 of 28) protein_coding-intron (ENSMUSG00000031303.8, intron 22 of 28) 12030 ENSMUSG00000031299.10 ENSMUSG00000031299 ENSMUST00000127535 Pdha1 protein_coding Interval_76272 chr17 78642921 78644191 + 0 NA Intergenic Intergenic 69628 ENSMUSG00000024076.10 ENSMUSG00000024076 ENSMUST00000232864 Vit protein_coding Interval_133781 chr6 12096809 12098558 + 0 NA Intergenic Intergenic 2586 ENSMUSG00000057223.6 ENSMUSG00000057223 ENSMUST00000203684 Gm6578 transcribed_processed_pseudogene Interval_101248 chr2 179829586 179830365 + 0 NA intron (ENSMUSG00000000305.12, intron 4 of 5) protein_coding-intron (ENSMUSG00000000305.12, intron 4 of 15) 52812 ENSMUSG00000000305.12 ENSMUSG00000000305 ENSMUST00000098996 Cdh4 protein_coding Interval_154069 chr8 12455307 12456621 + 0 NA Intergenic Intergenic 11000 ENSMUSG00000109921.1 ENSMUSG00000109921 ENSMUST00000209741 Gm33326 lincRNA Interval_75279 chr17 65657787 65657978 + 0 NA intron (ENSMUSG00000056515.9, intron 6 of 6) protein_coding-intron (ENSMUSG00000056515.9, intron 6 of 6) 3696 ENSMUSG00000117114.1 ENSMUSG00000117114 ENSMUST00000233942 Gm49867 processed_pseudogene Interval_47495 chr13 85442170 85443034 + 0 NA Intergenic Intergenic -30683 ENSMUSG00000103196.1 ENSMUSG00000103196 ENSMUST00000193837 Gm37641 TEC Interval_97442 chr2 136448954 136449621 + 0 NA Intergenic Intergenic -45865 ENSMUSG00000081310.1 ENSMUSG00000081310 ENSMUST00000120744 Gm14054 processed_pseudogene Interval_127717 chr5 107024855 107025527 + 0 NA Intergenic Intergenic -23645 ENSMUSG00000106554.1 ENSMUSG00000106554 ENSMUST00000199486 Gm33474 lincRNA Interval_147258 chr7 65202350 65203235 + 0 NA Intergenic Intergenic 10577 ENSMUSG00000108587.1 ENSMUSG00000108587 ENSMUST00000205499 1810049I09Rik lincRNA Interval_170196 chr9 106123552 106124072 + 0 NA intron (ENSMUSG00000100795.2, intron 1 of 1) lincRNA-intron (ENSMUSG00000100795.2, intron 2 of 2) -1913 ENSMUSG00000099717.1 ENSMUSG00000099717 ENSMUST00000188491 Gm9451 processed_pseudogene Interval_40064 chr12 100957850 100958843 + 0 NA intron (ENSMUSG00000021182.16, intron 10 of 29) protein_coding-intron (ENSMUSG00000021182.16, intron 10 of 29) 16489 ENSMUSG00000097160.2 ENSMUSG00000097160 ENSMUST00000221309 A630072L19Rik antisense Interval_49088 chr13 107882588 107883179 + 0 NA intron (ENSMUSG00000032846.10, intron 1 of 12) protein_coding-intron (ENSMUSG00000032846.10, intron 2 of 14) 7181 ENSMUSG00000032846.10 ENSMUSG00000032846 ENSMUST00000224719 Zswim6 protein_coding Interval_47322 chr13 81325108 81325814 + 0 NA intron (ENSMUSG00000069170.14, intron 21 of 27) protein_coding-intron (ENSMUSG00000069170.14, intron 83 of 89) 26165 ENSMUSG00000069170.14 ENSMUSG00000069170 ENSMUST00000132045 Adgrv1 protein_coding Interval_3189 chr1 54595054 54595488 + 0 NA Intergenic Intergenic 28568 ENSMUSG00000101130.1 ENSMUSG00000101130 ENSMUST00000185933 Gm19637 processed_pseudogene Interval_123262 chr5 30970061 30971163 + 0 NA intron (ENSMUSG00000006642.3, intron 2 of 2) protein_coding-intron (ENSMUSG00000006642.3, intron 2 of 2) 1950 ENSMUSG00000006642.3 ENSMUSG00000006642 ENSMUST00000006818 Tcf23 protein_coding Interval_111190 chr4 14546078 14547261 + 0 NA intron (ENSMUSG00000040569.13, intron 7 of 18) protein_coding-intron (ENSMUSG00000040569.13, intron 7 of 18) 74828 ENSMUSG00000040569.13 ENSMUSG00000040569 ENSMUST00000143105 Slc26a7 protein_coding Interval_161900 chr8 123643470 123644128 + 0 NA intron (ENSMUSG00000092329.1, intron 1 of 15) protein_coding-intron (ENSMUSG00000092329.1, intron 1 of 15) -10130 ENSMUSG00000039960.5 ENSMUSG00000039960 ENSMUST00000045487 Rhou protein_coding Interval_51012 chr14 21606417 21607212 + 0 NA intron (ENSMUSG00000021767.19, intron 2 of 5) protein_coding-intron (ENSMUSG00000021767.19, intron 2 of 16) 89939 ENSMUSG00000021767.19 ENSMUSG00000021767 ENSMUST00000226589 Kat6b protein_coding Interval_78388 chr18 12415015 12415862 + 0 NA intron (ENSMUSG00000024421.16, intron 8 of 74) protein_coding-intron (ENSMUSG00000024421.16, intron 8 of 74) 49639 ENSMUSG00000099663.1 ENSMUSG00000099663 ENSMUST00000189120 Gm29201 processed_pseudogene Interval_113434 chr4 54972819 54973777 + 0 NA intron (ENSMUSG00000060206.11, intron 1 of 12) protein_coding-intron (ENSMUSG00000060206.11, intron 1 of 12) 28250 ENSMUSG00000060206.11 ENSMUSG00000060206 ENSMUST00000079605 Zfp462 protein_coding Interval_160149 chr8 106735989 106736692 + 0 NA intron (ENSMUSG00000041949.6, intron 12 of 13) protein_coding-intron (ENSMUSG00000041949.6, intron 12 of 17) 53225 ENSMUSG00000041949.6 ENSMUSG00000041949 ENSMUST00000211979 Tango6 protein_coding Interval_140706 chr6 120736124 120737030 + 0 NA exon (ENSMUSG00000071226.11, exon 1 of 1) protein_coding-exon (ENSMUSG00000071226.11, exon 1 of 1) 821 ENSMUSG00000071226.11 ENSMUSG00000071226 ENSMUST00000143563 Cecr2 protein_coding Interval_153594 chr8 3597394 3599794 + 0 NA intron (ENSMUSG00000044433.16, intron 2 of 17) protein_coding-intron (ENSMUSG00000044433.16, intron 2 of 16) 10782 ENSMUSG00000044433.16 ENSMUSG00000044433 ENSMUST00000207152 Camsap3 protein_coding Interval_9892 chr1 163862687 163863010 + 0 NA intron (ENSMUSG00000026585.13, intron 15 of 20) protein_coding-intron (ENSMUSG00000026585.13, intron 15 of 19) -66942 ENSMUSG00000026584.14 ENSMUSG00000026584 ENSMUST00000162920 Scyl3 protein_coding Interval_63736 chr15 103162883 103163672 + 0 NA promoter-TSS (ENSMUSG00000036061.10) protein_coding-promoter-TSS (ENSMUSG00000036061.10) 41 ENSMUSG00000036061.10 ENSMUSG00000036061 ENSMUST00000230529 Smug1 protein_coding Interval_148945 chr7 90236210 90236545 + 0 NA exon (ENSMUSG00000030617.13, exon 8 of 8) protein_coding-exon (ENSMUSG00000030617.13, exon 8 of 8) 29400 ENSMUSG00000030617.13 ENSMUSG00000030617 ENSMUST00000207819 Ccdc83 protein_coding Interval_117972 chr4 127402406 127403052 + 0 NA Intergenic Intergenic 6069 ENSMUSG00000079998.2 ENSMUSG00000079998 ENSMUST00000116114 Gm12947 processed_pseudogene Interval_48717 chr13 101945007 101945274 + 0 NA Intergenic Intergenic 24720 ENSMUSG00000114717.1 ENSMUSG00000114717 ENSMUST00000224781 Gm17832 processed_pseudogene Interval_89830 chr2 25769565 25770093 + 0 NA Intergenic Intergenic 4260 ENSMUSG00000026936.4 ENSMUSG00000026936 ENSMUST00000028304 Lcn3 protein_coding Interval_168370 chr9 79751450 79752619 + 0 NA Intergenic Intergenic 7217 ENSMUSG00000032330.7 ENSMUSG00000032330 ENSMUST00000215452 Cox7a2 protein_coding Interval_123841 chr5 35883656 35884877 + 0 NA TTS (ENSMUSG00000029095.17) protein_coding-TTS (ENSMUSG00000029095.17) 26372 ENSMUSG00000029095.17 ENSMUSG00000029095 ENSMUST00000153529 Ablim2 protein_coding Interval_60957 chr15 78181081 78182445 + 0 NA Intergenic Intergenic 7302 ENSMUSG00000116697.1 ENSMUSG00000116697 ENSMUST00000231923 Gm49694 lincRNA Interval_43566 chr13 33631212 33631478 + 0 NA Intergenic Intergenic -10280 ENSMUSG00000083042.1 ENSMUSG00000083042 ENSMUST00000120908 Gm11388 unprocessed_pseudogene Interval_174350 chrX 147215277 147215582 + 0 NA Intergenic Intergenic 57219 ENSMUSG00000065450.1 ENSMUSG00000065450 ENSMUST00000083516 Mir448 miRNA Interval_48614 chr13 100676390 100676619 + 0 NA intron (ENSMUSG00000048924.14, intron 1 of 9) protein_coding-intron (ENSMUSG00000048924.14, intron 1 of 11) 6787 ENSMUSG00000048924.14 ENSMUSG00000048924 ENSMUST00000057325 Ccdc125 protein_coding Interval_66030 chr16 31047562 31048018 + 0 NA intron (ENSMUSG00000047434.14, intron 2 of 2) protein_coding-intron (ENSMUSG00000047434.14, intron 2 of 3) 22036 ENSMUSG00000047434.14 ENSMUSG00000047434 ENSMUST00000142870 Xxylt1 protein_coding Interval_131389 chr5 136881335 136883695 + 0 NA intron (ENSMUSG00000004415.15, intron 1 of 5) protein_coding-intron (ENSMUSG00000004415.15, intron 1 of 12) -12793 ENSMUSG00000092402.1 ENSMUSG00000092402 ENSMUST00000174452 Gm20485 sense_intronic Interval_88324 chr2 3767150 3767372 + 0 NA intron (ENSMUSG00000026655.15, intron 2 of 4) protein_coding-intron (ENSMUSG00000026655.15, intron 1 of 3) -12084 ENSMUSG00000085205.1 ENSMUSG00000085205 ENSMUST00000131044 Gm13185 antisense Interval_159362 chr8 94066119 94066587 + 0 NA exon (ENSMUSG00000033009.15, exon 13 of 13) protein_coding-exon (ENSMUSG00000033009.15, exon 13 of 13) 13403 ENSMUSG00000031755.6 ENSMUSG00000031755 ENSMUST00000172347 Bbs2 protein_coding Interval_75103 chr17 63435895 63436128 + 0 NA intron (ENSMUSG00000023965.13, intron 1 of 6) protein_coding-intron (ENSMUSG00000023965.13, intron 4 of 8) 15700 ENSMUSG00000023965.13 ENSMUSG00000023965 ENSMUST00000090318 Fbxl17 protein_coding Interval_156709 chr8 57505054 57506030 + 0 NA promoter-TSS (ENSMUSG00000096917.2) processed_transcript-promoter-TSS (ENSMUSG00000096917.2) -273 ENSMUSG00000096917.2 ENSMUSG00000096917 ENSMUST00000210752 2500002B13Rik processed_transcript Interval_168500 chr9 82610388 82611520 + 0 NA Intergenic Intergenic 85963 ENSMUSG00000098420.1 ENSMUSG00000098420 ENSMUST00000185049 Gm27249 processed_pseudogene Interval_150698 chr7 113502417 113502743 + 0 NA Intergenic Intergenic -11282 ENSMUSG00000030759.16 ENSMUSG00000030759 ENSMUST00000151133 Far1 protein_coding Interval_55975 chr14 103513130 103513399 + 0 NA promoter-TSS (ENSMUSG00000022123.9) protein_coding-promoter-TSS (ENSMUSG00000022123.9) -78 ENSMUSG00000022123.9 ENSMUSG00000022123 ENSMUST00000095576 Scel protein_coding Interval_94835 chr2 95813695 95813996 + 0 NA Intergenic Intergenic -24243 ENSMUSG00000087537.1 ENSMUSG00000087537 ENSMUST00000138883 Gm13799 lincRNA Interval_29873 chr11 87448013 87449608 + 0 NA TTS (ENSMUSG00000099291.1) snoRNA-TTS (ENSMUSG00000099291.1) 183 ENSMUSG00000099291.1 ENSMUSG00000099291 ENSMUST00000093738 Rnu3b3 snoRNA Interval_5464 chr1 89042829 89043490 + 0 NA Intergenic Intergenic -5815 ENSMUSG00000099544.1 ENSMUSG00000099544 ENSMUST00000190713 Gm18699 processed_pseudogene Interval_68039 chr16 64572082 64572991 + 0 NA intron (ENSMUSG00000068167.6, intron 1 of 2) protein_coding-intron (ENSMUSG00000068167.6, intron 1 of 2) 29872 ENSMUSG00000068167.6 ENSMUSG00000068167 ENSMUST00000089279 Csnka2ip protein_coding Interval_409 chr1 4987563 4988067 + 0 NA intron (ENSMUSG00000002459.17, intron 1 of 3) protein_coding-intron (ENSMUSG00000002459.17, intron 1 of 4) 16958 ENSMUSG00000085623.1 ENSMUSG00000085623 ENSMUST00000144339 Gm16041 antisense Interval_14484 chr10 34233539 34234680 + 0 NA promoter-TSS (ENSMUSG00000111149.1) lincRNA-promoter-TSS (ENSMUSG00000111149.1) -578 ENSMUSG00000111149.1 ENSMUSG00000111149 ENSMUST00000216701 Gm26564 lincRNA Interval_1785 chr1 33776037 33776234 + 0 NA intron (ENSMUSG00000042197.13, intron 8 of 12) protein_coding-intron (ENSMUSG00000042197.13, intron 10 of 14) -18408 ENSMUSG00000042215.8 ENSMUSG00000042215 ENSMUST00000189741 Bag2 protein_coding Interval_94190 chr2 84955858 84956841 + 0 NA exon (ENSMUSG00000027074.14, exon 12 of 13) protein_coding-exon (ENSMUSG00000027074.14, exon 12 of 13) 19459 ENSMUSG00000027074.14 ENSMUSG00000027074 ENSMUST00000155537 Slc43a3 protein_coding Interval_41236 chr12 112046412 112046926 + 0 NA intron (ENSMUSG00000054003.13, intron 27 of 31) protein_coding-intron (ENSMUSG00000054003.13, intron 31 of 35) 33603 ENSMUSG00000054003.13 ENSMUSG00000054003 ENSMUST00000193630 Tdrd9 protein_coding Interval_140464 chr6 118419172 118420053 + 0 NA promoter-TSS (ENSMUSG00000030138.8) protein_coding-promoter-TSS (ENSMUSG00000030138.8) -208 ENSMUSG00000030138.8 ENSMUSG00000030138 ENSMUST00000203444 Bms1 protein_coding Interval_45828 chr13 58390338 58390754 + 0 NA TTS (ENSMUSG00000021546.18) protein_coding-TTS (ENSMUSG00000021546.18) 2340 ENSMUSG00000065434.1 ENSMUSG00000065434 ENSMUST00000083500 Mir7-1 miRNA Interval_105623 chr3 88192139 88192806 + 0 NA Intergenic Intergenic -8151 ENSMUSG00000097428.1 ENSMUSG00000097428 ENSMUST00000180555 AW047730 processed_transcript Interval_117585 chr4 124849913 124851395 + 0 NA promoter-TSS (ENSMUSG00000028889.17) protein_coding-promoter-TSS (ENSMUSG00000028889.17) 542 ENSMUSG00000078570.10 ENSMUSG00000078570 ENSMUST00000137769 1110065P20Rik protein_coding Interval_18081 chr10 82160942 82161280 + 0 NA TTS (ENSMUSG00000112922.1) TEC-TTS (ENSMUSG00000112922.1) -3136 ENSMUSG00000112847.1 ENSMUSG00000112847 ENSMUST00000218999 Gm47573 TEC Interval_74962 chr17 58349754 58349958 + 0 NA intron (ENSMUSG00000038048.8, intron 19 of 23) protein_coding-intron (ENSMUSG00000038048.8, intron 19 of 23) -112469 ENSMUSG00000117281.1 ENSMUSG00000117281 ENSMUST00000233462 Gm49848 processed_pseudogene Interval_64702 chr16 14311526 14311928 + 0 NA promoter-TSS (ENSMUSG00000085612.1) antisense-promoter-TSS (ENSMUSG00000085612.1) -114 ENSMUSG00000085612.1 ENSMUSG00000085612 ENSMUST00000144291 Gm15868 antisense Interval_77801 chr18 3764722 3765449 + 0 NA Intergenic Intergenic 5719 ENSMUSG00000088480.1 ENSMUSG00000088480 ENSMUST00000157855 Gm23643 snRNA Interval_23861 chr11 27216025 27216284 + 0 NA Intergenic Intergenic 102824 ENSMUSG00000088438.1 ENSMUSG00000088438 ENSMUST00000157813 Gm25387 snoRNA Interval_161284 chr8 119490513 119491543 + 0 NA intron (ENSMUSG00000034224.14, intron 4 of 6) protein_coding-intron (ENSMUSG00000034224.14, intron 6 of 10) 10266 ENSMUSG00000034224.14 ENSMUSG00000034224 ENSMUST00000133821 Slc38a8 protein_coding Interval_151639 chr7 125607076 125607984 + 0 NA intron (ENSMUSG00000030745.9, intron 1 of 5) protein_coding-intron (ENSMUSG00000030745.9, intron 1 of 8) 4101 ENSMUSG00000030745.9 ENSMUSG00000030745 ENSMUST00000033000 Il21r protein_coding Interval_99039 chr2 156804609 156804859 + 0 NA Intergenic Intergenic -14331 ENSMUSG00000082196.3 ENSMUSG00000082196 ENSMUST00000120090 Gm14231 processed_pseudogene Interval_133764 chr6 11906939 11908455 + 0 NA promoter-TSS (ENSMUSG00000029632.7) protein_coding-promoter-TSS (ENSMUSG00000029632.7) -214 ENSMUSG00000029632.7 ENSMUSG00000029632 ENSMUST00000204714 Ndufa4 protein_coding Interval_140889 chr6 122607720 122610474 + 0 NA intron (ENSMUSG00000030117.5, intron 1 of 1) protein_coding-intron (ENSMUSG00000030117.5, intron 1 of 1) 727 ENSMUSG00000030117.5 ENSMUSG00000030117 ENSMUST00000204882 Gdf3 protein_coding Interval_130168 chr5 124710648 124712085 + 0 NA intron (ENSMUSG00000038023.12, intron 10 of 19) protein_coding-intron (ENSMUSG00000038023.12, intron 9 of 19) 5808 ENSMUSG00000088650.1 ENSMUSG00000088650 ENSMUST00000158025 Gm24854 snRNA Interval_146332 chr7 45376649 45377295 + 0 NA TTS (ENSMUSG00000063511.11) protein_coding-TTS (ENSMUSG00000063511.11) -8370 ENSMUSG00000003872.9 ENSMUSG00000003872 ENSMUST00000209226 Lin7b protein_coding Interval_54186 chr14 66052641 66052830 + 0 NA intron (ENSMUSG00000022039.6, intron 11 of 12) protein_coding-intron (ENSMUSG00000022039.6, intron 11 of 20) 7655 ENSMUSG00000068165.3 ENSMUSG00000068165 ENSMUST00000089275 Gm10233 processed_pseudogene Interval_171841 chr9 121679454 121679856 + 0 NA TTS (ENSMUSG00000061536.13) protein_coding-TTS (ENSMUSG00000061536.13) 13387 ENSMUSG00000061536.13 ENSMUSG00000061536 ENSMUST00000214595 Sec22c protein_coding Interval_30150 chr11 89830803 89831366 + 0 NA intron (ENSMUSG00000047773.15, intron 2 of 21) protein_coding-intron (ENSMUSG00000047773.15, intron 2 of 21) 10182 ENSMUSG00000047773.15 ENSMUSG00000047773 ENSMUST00000207171 Ankfn1 protein_coding Interval_165319 chr9 46272641 46273877 + 0 NA promoter-TSS (ENSMUSG00000032078.17) protein_coding-promoter-TSS (ENSMUSG00000032078.17) 195 ENSMUSG00000032078.17 ENSMUSG00000032078 ENSMUST00000143511 Zpr1 protein_coding Interval_136604 chr6 56524211 56524381 + 0 NA intron (ENSMUSG00000004347.17, intron 2 of 19) protein_coding-intron (ENSMUSG00000004347.17, intron 1 of 18) 59550 ENSMUSG00000096087.1 ENSMUSG00000096087 ENSMUST00000104123 Gm24709 snoRNA Interval_4491 chr1 74542234 74543018 + 0 NA promoter-TSS (ENSMUSG00000026173.15) protein_coding-promoter-TSS (ENSMUSG00000026173.15) -17801 ENSMUSG00000026173.15 ENSMUSG00000026173 ENSMUST00000135111 Plcd4 protein_coding Interval_91373 chr2 38350478 38352389 + 0 NA promoter-TSS (ENSMUSG00000000247.11) protein_coding-promoter-TSS (ENSMUSG00000000247.11) -335 ENSMUSG00000000247.11 ENSMUSG00000000247 ENSMUST00000175896 Lhx2 protein_coding Interval_118827 chr4 133920076 133920435 + 0 NA Intergenic Intergenic -33972 ENSMUSG00000003644.17 ENSMUSG00000003644 ENSMUST00000173961 Rps6ka1 protein_coding Interval_99756 chr2 164725872 164726615 + 0 NA Intergenic Intergenic 10938 ENSMUSG00000074593.11 ENSMUSG00000074593 ENSMUST00000180193 Spint5 protein_coding Interval_133592 chr6 7313181 7313407 + 0 NA Intergenic Intergenic 11386 ENSMUSG00000098501.7 ENSMUSG00000098501 ENSMUST00000184133 Gm19272 lincRNA Interval_5292 chr1 87281775 87282891 + 0 NA intron (ENSMUSG00000026255.15, intron 1 of 4) protein_coding-intron (ENSMUSG00000026255.15, intron 1 of 3) -17159 ENSMUSG00000089821.1 ENSMUSG00000089821 ENSMUST00000138844 Efhd1os antisense Interval_128795 chr5 115300284 115301614 + 0 NA promoter-TSS (ENSMUSG00000009013.5) protein_coding-promoter-TSS (ENSMUSG00000009013.5) -187 ENSMUSG00000086368.2 ENSMUSG00000086368 ENSMUST00000148916 Gm13830 lincRNA Interval_151225 chr7 119850340 119851048 + 0 NA Intergenic Intergenic 6829 ENSMUSG00000030924.16 ENSMUSG00000030924 ENSMUST00000151248 Rexo5 protein_coding Interval_60637 chr15 75856551 75857518 + 0 NA promoter-TSS (ENSMUSG00000098203.1) processed_pseudogene-promoter-TSS (ENSMUSG00000098203.1) -806 ENSMUSG00000098203.1 ENSMUSG00000098203 ENSMUST00000182514 Gm9568 processed_pseudogene Interval_94914 chr2 101699913 101701429 + 0 NA exon (ENSMUSG00000027164.8, exon 8 of 8) protein_coding-exon (ENSMUSG00000027164.8, exon 8 of 8) 16456 ENSMUSG00000027164.8 ENSMUSG00000027164 ENSMUST00000144063 Traf6 protein_coding Interval_173863 chrX 106080659 106081645 + 0 NA intron (ENSMUSG00000033792.12, intron 2 of 22) protein_coding-intron (ENSMUSG00000033792.12, intron 2 of 22) -25780 ENSMUSG00000033792.12 ENSMUSG00000033792 ENSMUST00000133875 Atp7a protein_coding Interval_92875 chr2 67565164 67566932 + 0 NA intron (ENSMUSG00000034780.6, intron 1 of 2) protein_coding-intron (ENSMUSG00000034780.6, intron 1 of 2) 177 ENSMUSG00000034780.6 ENSMUSG00000034780 ENSMUST00000112346 B3galt1 protein_coding Interval_101941 chr3 12579518 12579731 + 0 NA Intergenic Intergenic -51636 ENSMUSG00000104177.1 ENSMUSG00000104177 ENSMUST00000194635 Gm2429 processed_pseudogene Interval_159859 chr8 104406651 104407236 + 0 NA Intergenic Intergenic -11136 ENSMUSG00000096188.1 ENSMUSG00000096188 ENSMUST00000179802 Cmtm4 protein_coding Interval_111752 chr4 27384673 27386121 + 0 NA Intergenic Intergenic -157781 ENSMUSG00000084163.1 ENSMUSG00000084163 ENSMUST00000120412 Gm11901 processed_pseudogene Interval_138335 chr6 87334468 87336276 + 0 NA promoter-TSS (ENSMUSG00000108143.1) TEC-promoter-TSS (ENSMUSG00000108143.1) -512 ENSMUSG00000108143.1 ENSMUSG00000108143 ENSMUST00000203660 Gm44414 TEC Interval_100779 chr2 172484722 172484934 + 0 NA Intergenic Intergenic 12308 ENSMUSG00000027505.2 ENSMUSG00000027505 ENSMUST00000029007 Fam209 protein_coding Interval_77972 chr18 6275263 6276355 + 0 NA Intergenic Intergenic -34673 ENSMUSG00000006740.14 ENSMUSG00000006740 ENSMUST00000170959 Kif5b protein_coding Interval_51855 chr14 32994827 32996306 + 0 NA intron (ENSMUSG00000041673.12, intron 3 of 3) protein_coding-intron (ENSMUSG00000041673.12, intron 2 of 3) 301 ENSMUSG00000041673.12 ENSMUSG00000041673 ENSMUST00000123910 Lrrc18 protein_coding Interval_18688 chr10 89340332 89340653 + 0 NA intron (ENSMUSG00000035189.17, intron 1 of 1) protein_coding-intron (ENSMUSG00000035189.17, intron 1 of 1) -82902 ENSMUSG00000035189.17 ENSMUSG00000035189 ENSMUST00000180843 Ano4 protein_coding Interval_109536 chr3 144201811 144202708 + 0 NA promoter-TSS (ENSMUSG00000028266.17) protein_coding-promoter-TSS (ENSMUSG00000028266.17) 704 ENSMUSG00000028266.17 ENSMUSG00000028266 ENSMUST00000124891 Lmo4 protein_coding Interval_172859 chrX 52199446 52200612 + 0 NA Intergenic Intergenic -34777 ENSMUSG00000031119.4 ENSMUSG00000031119 ENSMUST00000033450 Gpc4 protein_coding Interval_155514 chr8 34053865 34054661 + 0 NA promoter-TSS (ENSMUSG00000054618.8) lincRNA-promoter-TSS (ENSMUSG00000054618.8) -359 ENSMUSG00000054618.8 ENSMUSG00000054618 ENSMUST00000149618 Gm9951 lincRNA Interval_129261 chr5 118501383 118502675 + 0 NA promoter-TSS (ENSMUSG00000082365.2) transcribed_processed_pseudogene-promoter-TSS (ENSMUSG00000082365.2) 15062 ENSMUSG00000082365.2 ENSMUSG00000082365 ENSMUST00000119191 Gm15754 transcribed_processed_pseudogene Interval_105531 chr3 87409195 87409710 + 0 NA Intergenic Intergenic -26321 ENSMUSG00000048031.15 ENSMUSG00000048031 ENSMUST00000178261 Fcrl5 protein_coding Interval_150176 chr7 107616690 107617034 + 0 NA intron (ENSMUSG00000036528.16, intron 1 of 25) protein_coding-intron (ENSMUSG00000036528.16, intron 1 of 24) 8299 ENSMUSG00000049740.2 ENSMUSG00000049740 ENSMUST00000060348 5330417H12Rik TEC Interval_168627 chr9 84466612 84467273 + 0 NA Intergenic Intergenic 42958 ENSMUSG00000099927.1 ENSMUSG00000099927 ENSMUST00000190511 Gm8226 processed_pseudogene Interval_95697 chr2 114364284 114364482 + 0 NA Intergenic Intergenic -90948 ENSMUSG00000101266.1 ENSMUSG00000101266 ENSMUST00000187452 Gm29234 lincRNA Interval_79725 chr18 34738181 34738799 + 0 NA TTS (ENSMUSG00000078240.2) protein_coding-TTS (ENSMUSG00000078240.2) -1509 ENSMUSG00000044201.10 ENSMUSG00000044201 ENSMUST00000237034 Cdc25c protein_coding Interval_147201 chr7 64380936 64381243 + 0 NA intron (ENSMUSG00000030521.11, intron 2 of 4) protein_coding-intron (ENSMUSG00000030521.11, intron 7 of 10) 3430 ENSMUSG00000030521.11 ENSMUSG00000030521 ENSMUST00000205516 Mphosph10 protein_coding Interval_72194 chr17 28522506 28523778 + 0 NA promoter-TSS (ENSMUSG00000066170.7) lincRNA-promoter-TSS (ENSMUSG00000066170.7) 6 ENSMUSG00000097714.1 ENSMUSG00000097714 ENSMUST00000180802 Gm20109 lincRNA Interval_160644 chr8 111281330 111281600 + 0 NA intron (ENSMUSG00000033596.5, intron 8 of 8) protein_coding-intron (ENSMUSG00000033596.5, intron 8 of 12) 18726 ENSMUSG00000033596.5 ENSMUSG00000033596 ENSMUST00000212958 Rfwd3 protein_coding Interval_101119 chr2 178101754 178102690 + 0 NA Intergenic Intergenic -23797 ENSMUSG00000078861.8 ENSMUSG00000078861 ENSMUST00000108923 Zfp931 protein_coding Interval_17841 chr10 80341787 80343548 + 0 NA TTS (ENSMUSG00000043822.18) protein_coding-TTS (ENSMUSG00000043822.18) 2571 ENSMUSG00000043822.18 ENSMUSG00000043822 ENSMUST00000138705 Adamtsl5 protein_coding Interval_97542 chr2 139599397 139599658 + 0 NA intron (ENSMUSG00000039092.9, intron 9 of 11) protein_coding-intron (ENSMUSG00000039092.9, intron 10 of 12) 11300 ENSMUSG00000098486.1 ENSMUSG00000098486 ENSMUST00000184747 Gm27385 snRNA Interval_58190 chr15 30553982 30554405 + 0 NA intron (ENSMUSG00000022240.10, intron 3 of 5) protein_coding-intron (ENSMUSG00000022240.10, intron 3 of 22) -36094 ENSMUSG00000087836.1 ENSMUSG00000087836 ENSMUST00000157211 Gm23956 rRNA Interval_95741 chr2 115598671 115599168 + 0 NA intron (ENSMUSG00000040282.13, intron 1 of 10) protein_coding-intron (ENSMUSG00000040282.13, intron 1 of 10) 17203 ENSMUSG00000040282.13 ENSMUSG00000040282 ENSMUST00000147968 BC052040 protein_coding Interval_64388 chr16 11045964 11047171 + 0 NA promoter-TSS (ENSMUSG00000116274.1) processed_pseudogene-promoter-TSS (ENSMUSG00000116274.1) -337 ENSMUSG00000116274.1 ENSMUSG00000116274 ENSMUST00000229230 Gm18724 processed_pseudogene Interval_29150 chr11 80716887 80717090 + 0 NA intron (ENSMUSG00000035441.14, intron 1 of 9) protein_coding-intron (ENSMUSG00000035441.14, intron 1 of 21) 63015 ENSMUSG00000035441.14 ENSMUSG00000035441 ENSMUST00000125944 Myo1d protein_coding Interval_44743 chr13 48158996 48160697 + 0 NA intron (ENSMUSG00000114457.1, intron 2 of 3) antisense-intron (ENSMUSG00000097622.2, intron 1 of 2) 77405 ENSMUSG00000114457.1 ENSMUSG00000114457 ENSMUST00000225626 Gm36346 lincRNA Interval_73173 chr17 35262475 35264330 + 0 NA exon (ENSMUSG00000073411.12, exon 2 of 7) protein_coding-exon (ENSMUSG00000073411.12, exon 2 of 7) -2075 ENSMUSG00000073411.12 ENSMUSG00000073411 ENSMUST00000174325 H2-D1 protein_coding Interval_101589 chr3 7366017 7367468 + 0 NA promoter-TSS (ENSMUSG00000027499.12) protein_coding-promoter-TSS (ENSMUSG00000027499.12) 51717 ENSMUSG00000103274.1 ENSMUSG00000103274 ENSMUST00000192071 Gm37918 processed_pseudogene Interval_156228 chr8 46265777 46266088 + 0 NA Intergenic Intergenic -6119 ENSMUSG00000089561.1 ENSMUSG00000089561 ENSMUST00000158936 Gm24669 snRNA Interval_87961 chr19 57395763 57396042 + 0 NA Intergenic Intergenic 27592 ENSMUSG00000117927.1 ENSMUSG00000117927 ENSMUST00000237878 Gm50271 lincRNA Interval_121977 chr5 12881765 12881990 + 0 NA Intergenic Intergenic -58493 ENSMUSG00000094310.1 ENSMUSG00000094310 ENSMUST00000180047 Gm23243 miRNA Interval_47758 chr13 92389011 92389326 + 0 NA TTS (ENSMUSG00000021707.5) protein_coding-TTS (ENSMUSG00000021707.5) -34169 ENSMUSG00000014850.15 ENSMUSG00000014850 ENSMUST00000187424 Msh3 protein_coding Interval_132002 chr5 142160920 142161899 + 0 NA intron (ENSMUSG00000039683.16, intron 36 of 44) protein_coding-intron (ENSMUSG00000039683.16, intron 32 of 40) -121697 ENSMUSG00000097947.1 ENSMUSG00000097947 ENSMUST00000182990 Gm26970 processed_pseudogene Interval_6185 chr1 100416365 100417067 + 0 NA intron (ENSMUSG00000067028.11, intron 12 of 16) protein_coding-intron (ENSMUSG00000067028.11, intron 19 of 23) 133925 ENSMUSG00000100794.1 ENSMUSG00000100794 ENSMUST00000190817 Gm29667 processed_pseudogene Interval_106904 chr3 101742072 101742575 + 0 NA Intergenic Intergenic -5801 ENSMUSG00000105642.1 ENSMUSG00000105642 ENSMUST00000199434 Gm43134 lincRNA Interval_146757 chr7 49974328 49976361 + 0 NA promoter-TSS (ENSMUSG00000055409.14) protein_coding-promoter-TSS (ENSMUSG00000055409.14) 65045 ENSMUSG00000039728.15 ENSMUSG00000039728 ENSMUST00000107605 Slc6a5 protein_coding Interval_13591 chr10 20004744 20005343 + 0 NA intron (ENSMUSG00000071369.11, intron 2 of 28) protein_coding-intron (ENSMUSG00000071369.11, intron 2 of 29) -97392 ENSMUSG00000020003.16 ENSMUSG00000020003 ENSMUST00000214951 Pex7 protein_coding Interval_38533 chr12 79924648 79925916 + 0 NA promoter-TSS (ENSMUSG00000112765.1) lincRNA-promoter-TSS (ENSMUSG00000112765.1) 212 ENSMUSG00000112765.1 ENSMUSG00000112765 ENSMUST00000219857 9430078K24Rik lincRNA Interval_83877 chr19 5294672 5295925 + 0 NA promoter-TSS (ENSMUSG00000024853.10) protein_coding-promoter-TSS (ENSMUSG00000024853.10) 102 ENSMUSG00000118243.1 ENSMUSG00000118243 ENSMUST00000236582 Gm50203 antisense Interval_33850 chr11 118985305 118986805 + 0 NA Intergenic Intergenic -2161 ENSMUSG00000046697.17 ENSMUSG00000046697 ENSMUST00000106273 Enpp7 protein_coding Interval_26504 chr11 58199185 58199837 + 0 NA promoter-TSS (ENSMUSG00000078853.8) protein_coding-promoter-TSS (ENSMUSG00000078853.8) -77 ENSMUSG00000078853.8 ENSMUSG00000078853 ENSMUST00000168280 Igtp protein_coding Interval_97294 chr2 133179798 133180485 + 0 NA Intergenic Intergenic -19470 ENSMUSG00000083689.1 ENSMUSG00000083689 ENSMUST00000117717 Gm14094 processed_pseudogene Interval_109064 chr3 135532881 135534979 + 0 NA intron (ENSMUSG00000028164.15, intron 7 of 12) protein_coding-intron (ENSMUSG00000028164.15, intron 7 of 16) -7398 ENSMUSG00000083610.1 ENSMUSG00000083610 ENSMUST00000121735 Oaz2-ps processed_pseudogene Interval_13872 chr10 24114366 24114738 + 0 NA Intergenic Intergenic -5018 ENSMUSG00000037424.6 ENSMUSG00000037424 ENSMUST00000041180 Taar9 protein_coding Interval_173287 chrX 76463861 76464103 + 0 NA Intergenic Intergenic 70530 ENSMUSG00000073085.2 ENSMUSG00000073085 ENSMUST00000178974 Cldn34b4 protein_coding Interval_113602 chr4 56933844 56934471 + 0 NA intron (ENSMUSG00000055296.14, intron 3 of 16) protein_coding-intron (ENSMUSG00000055296.14, intron 3 of 17) 13267 ENSMUSG00000055296.14 ENSMUSG00000055296 ENSMUST00000155625 Tmem245 protein_coding Interval_32508 chr11 107998368 107999319 + 0 NA intron (ENSMUSG00000050965.14, intron 1 of 5) protein_coding-intron (ENSMUSG00000050965.14, intron 8 of 16) 1995 ENSMUSG00000098989.1 ENSMUSG00000098989 ENSMUST00000183433 Mir7223 miRNA Interval_87601 chr19 53673784 53674937 + 0 NA Intergenic Intergenic -2946 ENSMUSG00000043639.15 ENSMUSG00000043639 ENSMUST00000161856 Rbm20 protein_coding Interval_13100 chr10 11331413 11332093 + 0 NA Intergenic Intergenic -1127 ENSMUSG00000087802.1 ENSMUSG00000087802 ENSMUST00000157177 Gm25979 snoRNA Interval_152633 chr7 135596146 135598150 + 0 NA intron (ENSMUSG00000041836.10, intron 1 of 20) protein_coding-intron (ENSMUSG00000041836.10, intron 1 of 20) 3760 ENSMUSG00000041836.10 ENSMUSG00000041836 ENSMUST00000211092 Ptpre protein_coding Interval_159366 chr8 94097925 94098879 + 0 NA exon (ENSMUSG00000031755.6, exon 1 of 17) protein_coding-exon (ENSMUSG00000031755.6, exon 1 of 17) -18646 ENSMUSG00000031755.6 ENSMUSG00000031755 ENSMUST00000172347 Bbs2 protein_coding Interval_47002 chr13 74192611 74193397 + 0 NA TTS (ENSMUSG00000034152.6) protein_coding-TTS (ENSMUSG00000034152.6) 15258 ENSMUSG00000034152.6 ENSMUSG00000034152 ENSMUST00000220548 Exoc3 protein_coding Interval_100410 chr2 168877649 168878904 + 0 NA Intergenic Intergenic 3892 ENSMUSG00000077761.1 ENSMUSG00000077761 ENSMUST00000104573 Gm25214 snoRNA Interval_151147 chr7 118817634 118818243 + 0 NA intron (ENSMUSG00000030982.19, intron 4 of 5) protein_coding-intron (ENSMUSG00000030982.19, intron 19 of 23) -7766 ENSMUSG00000030982.19 ENSMUSG00000030982 ENSMUST00000209103 Vps35l protein_coding Interval_143009 chr6 148336378 148336638 + 0 NA intron (ENSMUSG00000030306.14, intron 5 of 16) protein_coding-intron (ENSMUSG00000030306.14, intron 5 of 19) -18202 ENSMUSG00000063171.4 ENSMUSG00000063171 ENSMUST00000204242 Rps4l transcribed_processed_pseudogene Interval_110440 chr3 158187484 158188019 + 0 NA intron (ENSMUSG00000028176.13, intron 11 of 24) protein_coding-intron (ENSMUSG00000028176.13, intron 12 of 27) 7515 ENSMUSG00000106043.1 ENSMUSG00000106043 ENSMUST00000198578 Gm42968 TEC Interval_136974 chr6 65165193 65165399 + 0 NA Intergenic Intergenic -3868 ENSMUSG00000108230.1 ENSMUSG00000108230 ENSMUST00000203873 Gm3549 processed_pseudogene Interval_97919 chr2 145705119 145705754 + 0 NA intron (ENSMUSG00000001768.16, intron 1 of 3) protein_coding-intron (ENSMUSG00000001768.16, intron 1 of 3) -3711 ENSMUSG00000081722.1 ENSMUSG00000081722 ENSMUST00000119964 Gm11763 processed_pseudogene Interval_57571 chr15 12447128 12447756 + 0 NA intron (ENSMUSG00000022197.16, intron 3 of 7) protein_coding-intron (ENSMUSG00000022197.16, intron 2 of 23) -35062 ENSMUSG00000022197.16 ENSMUSG00000022197 ENSMUST00000189746 Pdzd2 protein_coding Interval_115611 chr4 101381191 101381987 + 0 NA intron (ENSMUSG00000087361.7, intron 3 of 3) lincRNA-intron (ENSMUSG00000087361.7, intron 3 of 3) 14938 ENSMUSG00000087361.7 ENSMUSG00000087361 ENSMUST00000142581 0610043K17Rik lincRNA Interval_120865 chr4 151146517 151147734 + 0 NA intron (ENSMUSG00000014592.21, intron 8 of 24) protein_coding-intron (ENSMUSG00000014592.21, intron 8 of 23) 57555 ENSMUSG00000078491.2 ENSMUSG00000078491 ENSMUST00000105667 Gm13090 protein_coding Interval_114147 chr4 64867398 64868624 + 0 NA Intergenic Intergenic -9872 ENSMUSG00000081941.1 ENSMUSG00000081941 ENSMUST00000121364 Gm11218 processed_pseudogene Interval_50479 chr14 13947264 13947494 + 0 NA intron (ENSMUSG00000079357.9, intron 2 of 2) protein_coding-intron (ENSMUSG00000079357.9, intron 3 of 4) 10252 ENSMUSG00000053453.9 ENSMUSG00000053453 ENSMUST00000226008 Thoc7 protein_coding Interval_113289 chr4 53158692 53160524 + 0 NA intron (ENSMUSG00000015243.4, intron 1 of 49) protein_coding-intron (ENSMUSG00000015243.4, intron 1 of 49) 57953 ENSMUSG00000087192.7 ENSMUSG00000087192 ENSMUST00000139222 4930412L05Rik processed_transcript Interval_22586 chr11 11960799 11961366 + 0 NA intron (ENSMUSG00000020176.17, intron 4 of 4) protein_coding-intron (ENSMUSG00000020176.17, intron 4 of 16) -47334 ENSMUSG00000087990.2 ENSMUSG00000087990 ENSMUST00000157365 Gm25058 scaRNA Interval_58105 chr15 27933190 27933855 + 0 NA intron (ENSMUSG00000022263.10, intron 1 of 56) protein_coding-intron (ENSMUSG00000022263.10, intron 1 of 56) 61841 ENSMUSG00000022263.10 ENSMUSG00000022263 ENSMUST00000228950 Trio protein_coding Interval_115976 chr4 106733807 106734273 + 0 NA exon (ENSMUSG00000034871.2, exon 1 of 8) protein_coding-exon (ENSMUSG00000034871.2, exon 1 of 8) 151 ENSMUSG00000034871.2 ENSMUSG00000034871 ENSMUST00000047620 Fam151a protein_coding Interval_94322 chr2 88743611 88744287 + 0 NA TTS (ENSMUSG00000075117.3) protein_coding-TTS (ENSMUSG00000075117.3) 7421 ENSMUSG00000075117.3 ENSMUSG00000075117 ENSMUST00000099814 Olfr1198 protein_coding Interval_50990 chr14 21520790 21521032 + 0 NA TTS (ENSMUSG00000021767.19) protein_coding-TTS (ENSMUSG00000021767.19) 4036 ENSMUSG00000021767.19 ENSMUSG00000021767 ENSMUST00000226589 Kat6b protein_coding Interval_12374 chr1 192742677 192743105 + 0 NA intron (ENSMUSG00000037375.16, intron 3 of 4) protein_coding-intron (ENSMUSG00000037375.16, intron 3 of 11) -2680 ENSMUSG00000094131.1 ENSMUSG00000094131 ENSMUST00000082947 Gm22265 snRNA Interval_47841 chr13 93673727 93674695 + 0 NA promoter-TSS (ENSMUSG00000042118.7) protein_coding-promoter-TSS (ENSMUSG00000042118.7) 91 ENSMUSG00000042118.7 ENSMUSG00000042118 ENSMUST00000015941 Bhmt2 protein_coding Interval_140604 chr6 120019539 120019741 + 0 NA intron (ENSMUSG00000045962.16, intron 1 of 25) protein_coding-intron (ENSMUSG00000045962.16, intron 1 of 27) 13642 ENSMUSG00000089936.1 ENSMUSG00000089936 ENSMUST00000160032 Gm16199 processed_pseudogene Interval_2919 chr1 50329714 50330108 + 0 NA Intergenic Intergenic 68168 ENSMUSG00000100451.1 ENSMUSG00000100451 ENSMUST00000191457 Gm29665 lincRNA Interval_167518 chr9 70202697 70203143 + 0 NA Intergenic Intergenic -4430 ENSMUSG00000032220.10 ENSMUSG00000032220 ENSMUST00000034745 Myo1e protein_coding Interval_156685 chr8 57304982 57305723 + 0 NA promoter-TSS (ENSMUSG00000100510.7) processed_transcript-promoter-TSS (ENSMUSG00000100510.7) -13300 ENSMUSG00000110327.1 ENSMUSG00000110327 ENSMUST00000209260 Gm17994 processed_pseudogene Interval_44696 chr13 47244434 47244827 + 0 NA exon (ENSMUSG00000038068.15, exon 8 of 8) protein_coding-exon (ENSMUSG00000038068.15, exon 8 of 8) 50805 ENSMUSG00000038068.15 ENSMUSG00000038068 ENSMUST00000110111 Rnf144b protein_coding Interval_155821 chr8 39376421 39376636 + 0 NA Intergenic Intergenic -64834 ENSMUSG00000109955.1 ENSMUSG00000109955 ENSMUST00000211458 Gm18644 processed_pseudogene Interval_98498 chr2 152792043 152793452 + 0 NA intron (ENSMUSG00000007659.18, intron 2 of 2) protein_coding-intron (ENSMUSG00000007659.18, intron 2 of 2) -19858 ENSMUSG00000093306.1 ENSMUSG00000093306 ENSMUST00000175565 Gm23802 miRNA Interval_72172 chr17 28407158 28407965 + 0 NA intron (ENSMUSG00000024222.17, intron 4 of 6) protein_coding-intron (ENSMUSG00000024222.17, intron 8 of 10) 18869 ENSMUSG00000117313.1 ENSMUSG00000117313 ENSMUST00000233201 Gm49838 sense_intronic Interval_167401 chr9 68719137 68719473 + 0 NA intron (ENSMUSG00000032238.17, intron 1 of 5) protein_coding-intron (ENSMUSG00000032238.17, intron 1 of 10) 65414 ENSMUSG00000032238.17 ENSMUSG00000032238 ENSMUST00000113624 Rora protein_coding Interval_84984 chr19 20970049 20970645 + 0 NA Intergenic Intergenic 47955 ENSMUSG00000118293.1 ENSMUSG00000118293 ENSMUST00000238088 Gm32750 antisense Interval_77280 chr17 87735632 87737668 + 0 NA Intergenic Intergenic 40109 ENSMUSG00000024151.13 ENSMUSG00000024151 ENSMUST00000174703 Msh2 protein_coding Interval_133954 chr6 16390679 16391772 + 0 NA Intergenic Intergenic 78725 ENSMUSG00000108295.2 ENSMUSG00000108295 ENSMUST00000203052 Gm36406 processed_transcript Interval_149093 chr7 93124091 93124263 + 0 NA Intergenic Intergenic 23794 ENSMUSG00000088877.1 ENSMUSG00000088877 ENSMUST00000158252 Gm25860 snoRNA Interval_120960 chr4 151944939 151946588 + 0 NA promoter-TSS (ENSMUSG00000039768.16) protein_coding-promoter-TSS (ENSMUSG00000039768.16) -29349 ENSMUSG00000104142.1 ENSMUSG00000104142 ENSMUST00000191938 Gm37141 TEC Interval_129098 chr5 117380969 117382628 + 0 NA promoter-TSS (ENSMUSG00000029363.14) protein_coding-promoter-TSS (ENSMUSG00000029363.14) 6146 ENSMUSG00000029364.15 ENSMUSG00000029364 ENSMUST00000136895 Wsb2 protein_coding Interval_168719 chr9 86294112 86294428 + 0 NA Intergenic Intergenic 22414 ENSMUSG00000083731.1 ENSMUSG00000083731 ENSMUST00000117532 Gm16202 processed_pseudogene Interval_27321 chr11 66216832 66217822 + 0 NA TTS (ENSMUSG00000053930.13) protein_coding-TTS (ENSMUSG00000053930.13) 49292 ENSMUSG00000084967.1 ENSMUSG00000084967 ENSMUST00000144922 Gm12296 processed_transcript Interval_48226 chr13 97297072 97297524 + 0 NA Intergenic Intergenic 14115 ENSMUSG00000097932.2 ENSMUSG00000097932 ENSMUST00000181148 C430039J16Rik lincRNA Interval_104996 chr3 79591063 79592512 + 0 NA intron (ENSMUSG00000027804.13, intron 1 of 3) protein_coding-intron (ENSMUSG00000027804.13, intron 1 of 9) 299 ENSMUSG00000027804.13 ENSMUSG00000027804 ENSMUST00000160799 Ppid protein_coding Interval_71858 chr17 26574719 26575114 + 0 NA intron (ENSMUSG00000001576.15, intron 1 of 9) protein_coding-intron (ENSMUSG00000001576.15, intron 1 of 8) 6011 ENSMUSG00000094969.1 ENSMUSG00000094969 ENSMUST00000178795 Gm22420 miRNA Interval_18765 chr10 90189853 90190365 + 0 NA intron (ENSMUSG00000058589.14, intron 9 of 25) protein_coding-intron (ENSMUSG00000058589.14, intron 9 of 17) -55292 ENSMUSG00000112140.1 ENSMUSG00000112140 ENSMUST00000217774 Gm5780 processed_pseudogene Interval_31157 chr11 98520151 98520357 + 0 NA intron (ENSMUSG00000018168.8, intron 1 of 2) protein_coding-intron (ENSMUSG00000018168.8, intron 1 of 7) -35189 ENSMUSG00000017195.15 ENSMUSG00000017195 ENSMUST00000126236 Zpbp2 protein_coding Interval_91351 chr2 38065925 38066105 + 0 NA intron (ENSMUSG00000035392.17, intron 4 of 5) protein_coding-intron (ENSMUSG00000035392.17, intron 5 of 21) 40220 ENSMUSG00000108155.1 ENSMUSG00000108155 ENSMUST00000204396 Gm44443 TEC Interval_89406 chr2 20507781 20510328 + 0 NA promoter-TSS (ENSMUSG00000036617.17) protein_coding-promoter-TSS (ENSMUSG00000036617.17) -993 ENSMUSG00000036617.17 ENSMUSG00000036617 ENSMUST00000156587 Etl4 protein_coding Interval_101671 chr3 8785003 8786792 + 0 NA Intergenic Intergenic -39073 ENSMUSG00000103256.1 ENSMUSG00000103256 ENSMUST00000194556 Gm37647 TEC Interval_136 GL456378.1 25011 25889 + 0 NA NA NA NA NA Interval_30237 chr11 91417814 91418276 + 0 NA Intergenic Intergenic 159513 ENSMUSG00000046755.5 ENSMUSG00000046755 ENSMUST00000061019 Kif2b protein_coding Interval_51975 chr14 34371919 34373081 + 0 NA intron (ENSMUSG00000023064.4, intron 3 of 4) protein_coding-intron (ENSMUSG00000023064.4, intron 3 of 4) 2289 ENSMUSG00000023064.4 ENSMUSG00000023064 ENSMUST00000023826 Sncg protein_coding Interval_159049 chr8 89060455 89061232 + 0 NA Intergenic Intergenic -16681 ENSMUSG00000031665.7 ENSMUSG00000031665 ENSMUST00000034090 Sall1 protein_coding Interval_59574 chr15 55498455 55498838 + 0 NA intron (ENSMUSG00000022371.16, intron 14 of 17) protein_coding-intron (ENSMUSG00000022371.16, intron 44 of 47) -19269 ENSMUSG00000115414.1 ENSMUSG00000115414 ENSMUST00000227284 Gm49257 processed_transcript Interval_4494 chr1 74556837 74557635 + 0 NA intron (ENSMUSG00000026173.15, intron 8 of 17) protein_coding-intron (ENSMUSG00000026173.15, intron 8 of 17) -3191 ENSMUSG00000026173.15 ENSMUSG00000026173 ENSMUST00000135111 Plcd4 protein_coding Interval_57963 chr15 25761647 25763078 + 0 NA intron (ENSMUSG00000022272.17, intron 1 of 3) protein_coding-intron (ENSMUSG00000022272.17, intron 1 of 20) -6194 ENSMUSG00000022272.17 ENSMUSG00000022272 ENSMUST00000145587 Myo10 protein_coding Interval_62912 chr15 97839958 97841015 + 0 NA intron (ENSMUSG00000022475.19, intron 1 of 21) protein_coding-intron (ENSMUSG00000022475.19, intron 1 of 23) -8992 ENSMUSG00000022475.19 ENSMUSG00000022475 ENSMUST00000134258 Hdac7 protein_coding Interval_73557 chr17 40418623 40419859 + 0 NA TTS (ENSMUSG00000117162.1) processed_pseudogene-TTS (ENSMUSG00000117162.1) 574 ENSMUSG00000117162.1 ENSMUSG00000117162 ENSMUST00000233579 Gm49840 processed_pseudogene Interval_3703 chr1 61368314 61368810 + 0 NA Intergenic Intergenic -9870 ENSMUSG00000085447.1 ENSMUSG00000085447 ENSMUST00000141000 9530026F06Rik lincRNA Interval_140783 chr6 121327349 121327574 + 0 NA intron (ENSMUSG00000030108.14, intron 7 of 8) protein_coding-intron (ENSMUSG00000030108.14, intron 7 of 14) -1785 ENSMUSG00000078042.1 ENSMUSG00000078042 ENSMUST00000104848 Gm24855 miRNA Interval_13236 chr10 13429972 13430186 + 0 NA intron (ENSMUSG00000062866.16, intron 1 of 12) protein_coding-intron (ENSMUSG00000062866.16, intron 1 of 12) -41348 ENSMUSG00000062866.16 ENSMUSG00000062866 ENSMUST00000154265 Phactr2 protein_coding Interval_94284 chr2 87488582 87488926 + 0 NA TTS (ENSMUSG00000025839.3) protein_coding-TTS (ENSMUSG00000025839.3) 8339 ENSMUSG00000025839.3 ENSMUSG00000025839 ENSMUST00000141790 Pramel7 protein_coding Interval_93437 chr2 73054021 73055175 + 0 NA Intergenic Intergenic -62150 ENSMUSG00000082455.3 ENSMUSG00000082455 ENSMUST00000120830 Gm13665 processed_pseudogene Interval_110505 chr4 3114726 3115404 + 0 NA Intergenic Intergenic -10473 ENSMUSG00000081279.1 ENSMUSG00000081279 ENSMUST00000118464 Vmn1r-ps2 unprocessed_pseudogene Interval_164174 chr9 32186393 32187162 + 0 NA intron (ENSMUSG00000041444.14, intron 7 of 21) protein_coding-intron (ENSMUSG00000041444.14, intron 2 of 4) -11609 ENSMUSG00000111382.1 ENSMUSG00000111382 ENSMUST00000213983 Gm47536 processed_pseudogene Interval_10072 chr1 165613915 165614251 + 0 NA promoter-TSS (ENSMUSG00000026566.15) protein_coding-promoter-TSS (ENSMUSG00000026566.15) -193 ENSMUSG00000103098.1 ENSMUSG00000103098 ENSMUST00000193556 Gm37559 processed_pseudogene Interval_40766 chr12 108245601 108246555 + 0 NA intron (ENSMUSG00000084883.2, intron 1 of 5) protein_coding-intron (ENSMUSG00000084883.2, intron 1 of 6) 29347 ENSMUSG00000084883.2 ENSMUSG00000084883 ENSMUST00000136175 Ccdc85c protein_coding Interval_24525 chr11 34008589 34009063 + 0 NA intron (ENSMUSG00000085684.2, intron 4 of 4) protein_coding-intron (ENSMUSG00000085684.2, intron 4 of 4) -15838 ENSMUSG00000053519.17 ENSMUSG00000053519 ENSMUST00000135034 Kcnip1 protein_coding Interval_89356 chr2 19694394 19695108 + 0 NA Intergenic Intergenic 3463 ENSMUSG00000077342.1 ENSMUSG00000077342 ENSMUST00000104154 Gm24670 snoRNA Interval_56721 chr14 121651900 121652134 + 0 NA intron (ENSMUSG00000025558.19, intron 8 of 55) protein_coding-intron (ENSMUSG00000025558.19, intron 8 of 53) 86844 ENSMUSG00000025558.19 ENSMUSG00000025558 ENSMUST00000238406 Dock9 protein_coding Interval_90823 chr2 32834687 32835234 + 0 NA intron (ENSMUSG00000026797.16, intron 1 of 19) protein_coding-intron (ENSMUSG00000026797.16, intron 1 of 18) 2971 ENSMUSG00000064652.1 ENSMUSG00000064652 ENSMUST00000082718 Gm24165 snoRNA Interval_129443 chr5 120192266 120193116 + 0 NA intron (ENSMUSG00000029594.12, intron 3 of 3) protein_coding-intron (ENSMUSG00000029594.12, intron 23 of 23) 16966 ENSMUSG00000029594.12 ENSMUSG00000029594 ENSMUST00000202788 Rbm19 protein_coding Interval_84475 chr19 11606183 11606415 + 0 NA Intergenic Intergenic 1139 ENSMUSG00000088598.1 ENSMUSG00000088598 ENSMUST00000157973 Gm24599 snoRNA Interval_72796 chr17 32234859 32235188 + 0 NA intron (ENSMUSG00000024002.18, intron 1 of 8) protein_coding-intron (ENSMUSG00000024002.18, intron 2 of 19) -7140 ENSMUSG00000116414.2 ENSMUSG00000116414 ENSMUST00000230961 Gm4432 processed_pseudogene Interval_89151 chr2 17485918 17486684 + 0 NA intron (ENSMUSG00000053702.16, intron 2 of 9) protein_coding-intron (ENSMUSG00000053702.16, intron 4 of 6) -72759 ENSMUSG00000085100.1 ENSMUSG00000085100 ENSMUST00000148607 Gm13324 antisense Interval_59116 chr15 44310583 44311737 + 0 NA Intergenic Intergenic -11952 ENSMUSG00000115694.1 ENSMUSG00000115694 ENSMUST00000228032 Gm19235 processed_pseudogene Interval_160188 chr8 107020350 107021148 + 0 NA Intergenic Intergenic 10439 ENSMUSG00000085464.1 ENSMUSG00000085464 ENSMUST00000128476 Gm16208 antisense Interval_26995 chr11 62270623 62271512 + 0 NA intron (ENSMUSG00000014243.5, intron 3 of 4) protein_coding-intron (ENSMUSG00000014243.5, intron 3 of 4) 10308 ENSMUSG00000014243.5 ENSMUSG00000014243 ENSMUST00000072916 Zswim7 protein_coding Interval_158048 chr8 78295685 78296235 + 0 NA intron (ENSMUSG00000037101.16, intron 6 of 10) protein_coding-intron (ENSMUSG00000037101.16, intron 9 of 13) 82610 ENSMUSG00000037101.16 ENSMUSG00000037101 ENSMUST00000124713 Ttc29 protein_coding Interval_4796 chr1 78821402 78822534 + 0 NA intron (ENSMUSG00000101324.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000101324.1, intron 1 of 1) 710 ENSMUSG00000101324.1 ENSMUSG00000101324 ENSMUST00000186681 Gm29187 lincRNA Interval_137719 chr6 81589851 81590096 + 0 NA Intergenic Intergenic -48338 ENSMUSG00000065212.1 ENSMUSG00000065212 ENSMUST00000083278 Gm26264 snRNA Interval_149494 chr7 99094550 99095595 + 0 NA intron (ENSMUSG00000035354.9, intron 4 of 11) protein_coding-intron (ENSMUSG00000035354.9, intron 4 of 14) 4840 ENSMUSG00000109492.1 ENSMUSG00000109492 ENSMUST00000208990 Gm33882 processed_pseudogene Interval_140142 chr6 114807419 114807821 + 0 NA intron (ENSMUSG00000030314.16, intron 20 of 20) protein_coding-intron (ENSMUSG00000030314.16, intron 18 of 18) 18230 ENSMUSG00000107395.1 ENSMUSG00000107395 ENSMUST00000203217 Gm44331 processed_pseudogene Interval_60610 chr15 75659714 75659998 + 0 NA intron (ENSMUSG00000000934.9, intron 12 of 13) protein_coding-intron (ENSMUSG00000000934.9, intron 12 of 13) -1551 ENSMUSG00000085523.1 ENSMUSG00000085523 ENSMUST00000146755 Gm15945 antisense Interval_79823 chr18 35358551 35359877 + 0 NA intron (ENSMUSG00000024357.10, intron 2 of 2) protein_coding-intron (ENSMUSG00000024357.10, intron 3 of 9) 95185 ENSMUSG00000117876.1 ENSMUSG00000117876 ENSMUST00000236119 Gm50146 antisense Interval_129583 chr5 121128826 121130355 + 0 NA TTS (ENSMUSG00000043733.14) protein_coding-TTS (ENSMUSG00000043733.14) 14045 ENSMUSG00000043733.14 ENSMUSG00000043733 ENSMUST00000148871 Ptpn11 protein_coding Interval_107398 chr3 107290869 107291465 + 0 NA promoter-TSS (ENSMUSG00000027896.15) protein_coding-promoter-TSS (ENSMUSG00000027896.15) -127 ENSMUSG00000027896.15 ENSMUSG00000027896 ENSMUST00000106723 Slc16a4 protein_coding Interval_43707 chr13 35515417 35515961 + 0 NA Intergenic Intergenic -28213 ENSMUSG00000114337.1 ENSMUSG00000114337 ENSMUST00000225154 Gm48704 lincRNA Interval_67535 chr16 50415926 50416124 + 0 NA intron (ENSMUSG00000022641.15, intron 2 of 16) protein_coding-intron (ENSMUSG00000022641.15, intron 2 of 15) 16284 ENSMUSG00000022641.15 ENSMUSG00000022641 ENSMUST00000130210 Bbx protein_coding Interval_59677 chr15 57863918 57864459 + 0 NA Intergenic Intergenic 26206 ENSMUSG00000022365.6 ENSMUSG00000022365 ENSMUST00000226911 Derl1 protein_coding Interval_97711 chr2 143089539 143091113 + 0 NA Intergenic Intergenic 11853 ENSMUSG00000027416.2 ENSMUSG00000027416 ENSMUST00000028902 Otor protein_coding Interval_159061 chr8 89215057 89215453 + 0 NA Intergenic Intergenic -27695 ENSMUSG00000069962.3 ENSMUSG00000069962 ENSMUST00000093326 Gm5356 processed_pseudogene Interval_100349 chr2 168570445 168571681 + 0 NA exon (ENSMUSG00000027544.16, exon 2 of 7) protein_coding-exon (ENSMUSG00000027544.16, exon 2 of 7) 30592 ENSMUSG00000027544.16 ENSMUSG00000027544 ENSMUST00000138546 Nfatc2 protein_coding Interval_144663 chr7 27395136 27398135 + 0 NA promoter-TSS (ENSMUSG00000011751.16) protein_coding-promoter-TSS (ENSMUSG00000011751.16) -36501 ENSMUSG00000108416.1 ENSMUSG00000108416 ENSMUST00000138087 Gm44924 processed_transcript Interval_122052 chr5 14668928 14669681 + 0 NA exon (ENSMUSG00000061601.15, exon 4 of 25) protein_coding-exon (ENSMUSG00000061601.15, exon 4 of 25) 3655 ENSMUSG00000105578.1 ENSMUSG00000105578 ENSMUST00000198643 Gm43663 TEC Interval_102683 chr3 29936557 29937203 + 0 NA Intergenic Intergenic 10344 ENSMUSG00000102884.1 ENSMUSG00000102884 ENSMUST00000192412 Gm37281 processed_pseudogene Interval_41936 chr13 4800539 4800988 + 0 NA intron (ENSMUSG00000053499.4, intron 1 of 2) lincRNA-intron (ENSMUSG00000053499.4, intron 1 of 2) 29112 ENSMUSG00000053499.4 ENSMUSG00000053499 ENSMUST00000065956 Gm5444 lincRNA Interval_120101 chr4 141821454 141823306 + 0 NA intron (ENSMUSG00000058579.5, intron 2 of 7) protein_coding-intron (ENSMUSG00000058579.5, intron 2 of 7) 3621 ENSMUSG00000058579.5 ENSMUSG00000058579 ENSMUST00000155826 Cela2a protein_coding Interval_69950 chr17 3448588 3449167 + 0 NA intron (ENSMUSG00000023800.15, intron 10 of 26) protein_coding-intron (ENSMUSG00000023800.15, intron 10 of 26) 13455 ENSMUSG00000115039.1 ENSMUSG00000115039 ENSMUST00000228135 Gm7043 processed_pseudogene Interval_19382 chr10 98699168 98700069 + 0 NA promoter-TSS (ENSMUSG00000112647.1) lincRNA-promoter-TSS (ENSMUSG00000112647.1) 92 ENSMUSG00000112647.1 ENSMUSG00000112647 ENSMUST00000217680 Gm5427 lincRNA Interval_128576 chr5 114119104 114120652 + 0 NA intron (ENSMUSG00000029592.11, intron 9 of 11) protein_coding-intron (ENSMUSG00000029592.11, intron 9 of 12) 4049 ENSMUSG00000105514.1 ENSMUSG00000105514 ENSMUST00000197936 Gm42913 TEC Interval_89210 chr2 18079555 18079901 + 0 NA intron (ENSMUSG00000026743.16, intron 3 of 6) protein_coding-intron (ENSMUSG00000026743.16, intron 3 of 22) 14887 ENSMUSG00000026743.16 ENSMUSG00000026743 ENSMUST00000149786 Mllt10 protein_coding Interval_151155 chr7 118871009 118871772 + 0 NA intron (ENSMUSG00000073856.11, intron 1 of 4) protein_coding-intron (ENSMUSG00000073856.11, intron 1 of 8) 15638 ENSMUSG00000073856.11 ENSMUSG00000073856 ENSMUST00000132148 Iqck protein_coding Interval_86757 chr19 43655611 43656639 + 0 NA Intergenic Intergenic 10375 ENSMUSG00000118236.1 ENSMUSG00000118236 ENSMUST00000237632 Gm34922 lincRNA Interval_102725 chr3 30611207 30612048 + 0 NA intron (ENSMUSG00000037730.13, intron 5 of 6) protein_coding-intron (ENSMUSG00000037730.13, intron 5 of 6) 8983 ENSMUSG00000037730.13 ENSMUSG00000037730 ENSMUST00000193736 Mynn protein_coding Interval_115915 chr4 106243409 106244837 + 0 NA intron (ENSMUSG00000086249.1, intron 1 of 4) processed_transcript-intron (ENSMUSG00000086249.1, intron 1 of 4) 2907 ENSMUSG00000086249.1 ENSMUSG00000086249 ENSMUST00000140196 Gm12724 processed_transcript Interval_161486 chr8 120677530 120678989 + 0 NA intron (ENSMUSG00000092329.1, intron 1 of 15) protein_coding-intron (ENSMUSG00000092329.1, intron 1 of 15) -7140 ENSMUSG00000104484.1 ENSMUSG00000104484 ENSMUST00000193913 Gm33142 TEC Interval_167517 chr9 70197072 70197848 + 0 NA Intergenic Intergenic -9890 ENSMUSG00000032220.10 ENSMUSG00000032220 ENSMUST00000034745 Myo1e protein_coding Interval_108113 chr3 121576434 121579050 + 0 NA Intergenic Intergenic 46113 ENSMUSG00000097124.2 ENSMUSG00000097124 ENSMUST00000180804 A530020G20Rik antisense Interval_145739 chr7 37956154 37956424 + 0 NA Intergenic Intergenic 67262 ENSMUSG00000030421.9 ENSMUSG00000030421 ENSMUST00000206169 Uri1 protein_coding Interval_102471 chr3 27079283 27079871 + 0 NA Intergenic Intergenic -29405 ENSMUSG00000087742.1 ENSMUSG00000087742 ENSMUST00000157117 Gm25152 snoRNA Interval_16068 chr10 60458971 60459432 + 0 NA intron (ENSMUSG00000012819.15, intron 12 of 65) protein_coding-intron (ENSMUSG00000012819.15, intron 12 of 66) 59297 ENSMUSG00000090439.3 ENSMUSG00000090439 ENSMUST00000218360 Gm17455 protein_coding Interval_58432 chr15 34481146 34482224 + 0 NA promoter-TSS (ENSMUSG00000115300.1) TEC-promoter-TSS (ENSMUSG00000115300.1) -22 ENSMUSG00000115300.1 ENSMUSG00000115300 ENSMUST00000226218 Gm49188 TEC Interval_31642 chr11 101943184 101943652 + 0 NA Intergenic Intergenic 3917 ENSMUSG00000082171.1 ENSMUSG00000082171 ENSMUST00000120378 Rpl27-ps2 processed_pseudogene Interval_12287 chr1 191404781 191405003 + 0 NA Intergenic Intergenic -2774 ENSMUSG00000103433.1 ENSMUSG00000103433 ENSMUST00000194903 Gm2272 processed_pseudogene Interval_30774 chr11 96393534 96393770 + 0 NA TTS (ENSMUSG00000075587.5) processed_pseudogene-TTS (ENSMUSG00000075587.5) 1540 ENSMUSG00000075587.5 ENSMUSG00000075587 ENSMUST00000117614 Gm11531 processed_pseudogene Interval_154145 chr8 13033235 13033447 + 0 NA intron (ENSMUSG00000031443.7, intron 5 of 7) protein_coding-intron (ENSMUSG00000031443.7, intron 5 of 7) -4497 ENSMUSG00000031444.16 ENSMUSG00000031444 ENSMUST00000152034 F10 protein_coding Interval_81933 chr18 65980007 65981248 + 0 NA TTS (ENSMUSG00000041891.16) protein_coding-TTS (ENSMUSG00000041891.16) -12945 ENSMUSG00000024519.6 ENSMUSG00000024519 ENSMUST00000236894 Cplx4 protein_coding Interval_4513 chr1 74740230 74740795 + 0 NA TTS (ENSMUSG00000006542.13) protein_coding-TTS (ENSMUSG00000006542.13) 5161 ENSMUSG00000026170.6 ENSMUSG00000026170 ENSMUST00000189083 Cyp27a1 protein_coding Interval_55763 chr14 99772720 99773744 + 0 NA TTS (ENSMUSG00000065238.1) snRNA-TTS (ENSMUSG00000065238.1) 576 ENSMUSG00000065238.1 ENSMUSG00000065238 ENSMUST00000083304 Gm22970 snRNA Interval_45391 chr13 54828440 54829743 + 0 NA Intergenic Intergenic 11813 ENSMUSG00000086097.1 ENSMUSG00000086097 ENSMUST00000148974 Gm16250 processed_pseudogene Interval_96366 chr2 122001869 122002732 + 0 NA intron (ENSMUSG00000033411.16, intron 8 of 12) protein_coding-intron (ENSMUSG00000033411.16, intron 8 of 12) -26342 ENSMUSG00000104603.1 ENSMUSG00000104603 ENSMUST00000197244 Gm47314 miRNA Interval_137730 chr6 81826744 81827001 + 0 NA Intergenic Intergenic 14492 ENSMUSG00000108202.1 ENSMUSG00000108202 ENSMUST00000203589 Gm4874 processed_pseudogene Interval_75246 chr17 65329197 65329674 + 0 NA intron (ENSMUSG00000045036.15, intron 11 of 12) protein_coding-intron (ENSMUSG00000045036.15, intron 14 of 15) 66855 ENSMUSG00000117012.1 ENSMUSG00000117012 ENSMUST00000232744 Gm18992 processed_pseudogene Interval_54542 chr14 70584410 70584816 + 0 NA exon (ENSMUSG00000022095.9, exon 17 of 17) protein_coding-exon (ENSMUSG00000022095.9, exon 17 of 17) 6521 ENSMUSG00000045211.5 ENSMUSG00000045211 ENSMUST00000228768 Nudt18 protein_coding Interval_5738 chr1 91353810 91354092 + 0 NA exon (ENSMUSG00000026308.8, exon 2 of 8) protein_coding-exon (ENSMUSG00000026308.8, exon 2 of 8) 2935 ENSMUSG00000026308.8 ENSMUSG00000026308 ENSMUST00000027533 Klhl30 protein_coding Interval_70387 chr17 9667528 9668197 + 0 NA exon (ENSMUSG00000046173.3, exon 1 of 1) protein_coding-exon (ENSMUSG00000046173.3, exon 1 of 1) 1855 ENSMUSG00000046173.3 ENSMUSG00000046173 ENSMUST00000057190 Pabpc6 protein_coding Interval_57364 chr15 9839706 9840509 + 0 NA Intergenic Intergenic -91269 ENSMUSG00000072663.12 ENSMUSG00000072663 ENSMUST00000159368 Spef2 protein_coding Interval_32518 chr11 108068893 108069156 + 0 NA intron (ENSMUSG00000050965.14, intron 3 of 16) protein_coding-intron (ENSMUSG00000050965.14, intron 3 of 16) -56219 ENSMUSG00000050965.14 ENSMUSG00000050965 ENSMUST00000134725 Prkca protein_coding Interval_24472 chr11 33522135 33522469 + 0 NA Intergenic Intergenic 56657 ENSMUSG00000020159.8 ENSMUSG00000020159 ENSMUST00000135350 Gabrp protein_coding Interval_23220 chr11 20631264 20632631 + 0 NA promoter-TSS (ENSMUSG00000049800.13) protein_coding-promoter-TSS (ENSMUSG00000049800.13) -56758 ENSMUSG00000083555.1 ENSMUSG00000083555 ENSMUST00000121890 Gm12035 processed_pseudogene Interval_26666 chr11 59560377 59561223 + 0 NA intron (ENSMUSG00000032691.14, intron 7 of 9) protein_coding-intron (ENSMUSG00000032691.14, intron 8 of 10) 15369 ENSMUSG00000059610.5 ENSMUSG00000059610 ENSMUST00000071943 Olfr222 protein_coding Interval_56456 chr14 118896234 118896560 + 0 NA intron (ENSMUSG00000042156.16, intron 1 of 1) protein_coding-intron (ENSMUSG00000042156.16, intron 12 of 21) -6734 ENSMUSG00000042156.16 ENSMUSG00000042156 ENSMUST00000226919 Dzip1 protein_coding Interval_164468 chr9 37254848 37256286 + 0 NA promoter-TSS (ENSMUSG00000032122.15) protein_coding-promoter-TSS (ENSMUSG00000032122.15) 69 ENSMUSG00000111797.1 ENSMUSG00000111797 ENSMUST00000214389 Gm48081 antisense Interval_56747 chr14 121837999 121838545 + 0 NA Intergenic Intergenic 7258 ENSMUSG00000115443.1 ENSMUSG00000115443 ENSMUST00000228932 Gm9395 processed_pseudogene Interval_164979 chr9 43582480 43582725 + 0 NA Intergenic Intergenic -25582 ENSMUSG00000110988.1 ENSMUSG00000110988 ENSMUST00000214500 Gm29909 lincRNA Interval_23514 chr11 23053533 23053779 + 0 NA Intergenic Intergenic 9576 ENSMUSG00000088010.1 ENSMUSG00000088010 ENSMUST00000157385 Gm23740 rRNA Interval_20657 chr10 120071572 120072608 + 0 NA intron (ENSMUSG00000034813.18, intron 13 of 14) protein_coding-intron (ENSMUSG00000034813.18, intron 21 of 22) 40775 ENSMUSG00000020228.11 ENSMUSG00000020228 ENSMUST00000154501 Helb protein_coding Interval_170312 chr9 106861425 106861914 + 0 NA intron (ENSMUSG00000040325.16, intron 16 of 22) protein_coding-intron (ENSMUSG00000040325.16, intron 16 of 22) -9005 ENSMUSG00000103835.1 ENSMUSG00000103835 ENSMUST00000193626 Gm37612 sense_intronic Interval_8006 chr1 135181000 135181210 + 0 NA Intergenic Intergenic -13424 ENSMUSG00000026424.8 ENSMUSG00000026424 ENSMUST00000027682 Gpr37l1 protein_coding Interval_16631 chr10 66581730 66583020 + 0 NA Intergenic Intergenic -58543 ENSMUSG00000101338.1 ENSMUSG00000101338 ENSMUST00000189480 Gm28139 lincRNA Interval_34012 chr11 120011524 120013738 + 0 NA promoter-TSS (ENSMUSG00000025375.15) protein_coding-promoter-TSS (ENSMUSG00000025375.15) -2136 ENSMUSG00000105524.1 ENSMUSG00000105524 ENSMUST00000198674 Mir3065 miRNA Interval_118028 chr4 128441429 128441986 + 0 NA intron (ENSMUSG00000028804.20, intron 25 of 70) protein_coding-intron (ENSMUSG00000028804.20, intron 25 of 70) -110868 ENSMUSG00000028804.20 ENSMUSG00000028804 ENSMUST00000221199 Csmd2 protein_coding Interval_32381 chr11 107245823 107246084 + 0 NA intron (ENSMUSG00000040430.18, intron 6 of 7) protein_coding-intron (ENSMUSG00000040430.18, intron 5 of 7) 54859 ENSMUSG00000081360.1 ENSMUSG00000081360 ENSMUST00000119942 Gm11718 processed_pseudogene Interval_114744 chr4 84684929 84686430 + 0 NA Intergenic Intergenic -12184 ENSMUSG00000081775.1 ENSMUSG00000081775 ENSMUST00000119869 Gm12420 processed_pseudogene Interval_54424 chr14 69241138 69242038 + 0 NA TTS (ENSMUSG00000034248.7) protein_coding-TTS (ENSMUSG00000034248.7) -17558 ENSMUSG00000098248.1 ENSMUSG00000098248 ENSMUST00000183398 Gm27222 antisense Interval_129008 chr5 116618346 116618592 + 0 NA Intergenic Intergenic 15095 ENSMUSG00000107369.1 ENSMUSG00000107369 ENSMUST00000201478 Gstm2-ps1 processed_pseudogene Interval_24327 chr11 32399726 32400300 + 0 NA intron (ENSMUSG00000040711.8, intron 6 of 13) protein_coding-intron (ENSMUSG00000040711.8, intron 6 of 12) 52193 ENSMUSG00000040711.8 ENSMUSG00000040711 ENSMUST00000138771 Sh3pxd2b protein_coding Interval_78646 chr18 16337157 16337818 + 0 NA Intergenic Intergenic -62543 ENSMUSG00000063628.2 ENSMUSG00000063628 ENSMUST00000076710 Gm7665 processed_pseudogene Interval_77134 chr17 86784528 86784834 + 0 NA intron (ENSMUSG00000024140.10, intron 1 of 15) protein_coding-intron (ENSMUSG00000024140.10, intron 1 of 15) 11411 ENSMUSG00000117538.1 ENSMUSG00000117538 ENSMUST00000234482 Gm50008 TEC Interval_57766 chr15 19360784 19361085 + 0 NA intron (ENSMUSG00000114971.1, intron 3 of 3) lincRNA-intron (ENSMUSG00000114971.1, intron 3 of 3) 34488 ENSMUSG00000114971.1 ENSMUSG00000114971 ENSMUST00000228706 Gm49162 lincRNA Interval_77352 chr17 88141083 88142423 + 0 NA Intergenic Intergenic 16241 ENSMUSG00000058869.9 ENSMUSG00000058869 ENSMUST00000182679 Gm4832 transcribed_processed_pseudogene Interval_91648 chr2 45229196 45229417 + 0 NA Intergenic Intergenic -51418 ENSMUSG00000098320.1 ENSMUSG00000098320 ENSMUST00000183957 Vis1 misc_RNA Interval_28174 chr11 73469256 73470450 + 0 NA Intergenic Intergenic -12345 ENSMUSG00000072709.3 ENSMUSG00000072709 ENSMUST00000075532 Olfr380 protein_coding Interval_122936 chr5 27587197 27587546 + 0 NA intron (ENSMUSG00000061576.15, intron 3 of 12) protein_coding-intron (ENSMUSG00000061576.15, intron 7 of 25) -33496 ENSMUSG00000086505.1 ENSMUSG00000086505 ENSMUST00000124392 Gm16058 antisense Interval_68470 chr16 77444160 77444543 + 0 NA intron (ENSMUSG00000090386.10, intron 3 of 5) processed_transcript-intron (ENSMUSG00000090386.10, intron 2 of 4) -22531 ENSMUSG00000102344.1 ENSMUSG00000102344 ENSMUST00000192654 9430053O09Rik TEC Interval_44811 chr13 48842043 48842475 + 0 NA intron (ENSMUSG00000038025.8, intron 1 of 21) protein_coding-intron (ENSMUSG00000038025.8, intron 1 of 21) -28853 ENSMUSG00000086889.1 ENSMUSG00000086889 ENSMUST00000123212 Phf2os1 antisense Interval_48370 chr13 98572166 98574134 + 0 NA Intergenic Intergenic 12796 ENSMUSG00000093116.1 ENSMUSG00000093116 ENSMUST00000175375 Gm22698 miRNA Interval_120698 chr4 150162265 150163210 + 0 NA intron (ENSMUSG00000062064.6, intron 8 of 11) protein_coding-intron (ENSMUSG00000062064.6, intron 8 of 11) 4909 ENSMUSG00000062064.6 ENSMUSG00000062064 ENSMUST00000133379 Slc2a7 protein_coding Interval_280 KZ289069.1 488766 491107 + 0 NA NA NA NA NA Interval_54682 chr14 73263108 73263418 + 0 NA intron (ENSMUSG00000022105.6, intron 1 of 1) protein_coding-intron (ENSMUSG00000022105.6, intron 16 of 26) -23477 ENSMUSG00000022105.6 ENSMUSG00000022105 ENSMUST00000164624 Rb1 protein_coding Interval_25910 chr11 52483116 52484498 + 0 NA Intergenic Intergenic 3503 ENSMUSG00000083129.1 ENSMUSG00000083129 ENSMUST00000118245 Gm12210 processed_pseudogene Interval_49180 chr13 109228115 109228396 + 0 NA intron (ENSMUSG00000021699.17, intron 1 of 14) protein_coding-intron (ENSMUSG00000021699.17, intron 1 of 14) -96489 ENSMUSG00000076946.2 ENSMUSG00000076946 ENSMUST00000103758 Mir582 miRNA Interval_9294 chr1 155972556 155973944 + 0 NA promoter-TSS (ENSMUSG00000033671.18) protein_coding-promoter-TSS (ENSMUSG00000033671.18) -66 ENSMUSG00000033671.18 ENSMUSG00000033671 ENSMUST00000192899 Cep350 protein_coding Interval_115783 chr4 104205659 104205860 + 0 NA intron (ENSMUSG00000028519.16, intron 3 of 9) protein_coding-intron (ENSMUSG00000028519.16, intron 3 of 9) 264800 ENSMUSG00000081696.2 ENSMUSG00000081696 ENSMUST00000118427 Gm12717 processed_pseudogene Interval_145136 chr7 30225959 30226566 + 0 NA intron (ENSMUSG00000006095.12, intron 1 of 2) protein_coding-intron (ENSMUSG00000006095.12, intron 4 of 5) 738 ENSMUSG00000006095.12 ENSMUSG00000006095 ENSMUST00000141608 Tbcb protein_coding Interval_41964 chr13 5690028 5691361 + 0 NA intron (ENSMUSG00000114053.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000114053.1, intron 1 of 2) -119566 ENSMUSG00000114053.1 ENSMUSG00000114053 ENSMUST00000223254 Gm35330 lincRNA Interval_127887 chr5 108638101 108638600 + 0 NA exon (ENSMUSG00000013495.15, exon 2 of 11) protein_coding-exon (ENSMUSG00000013495.15, exon 2 of 11) -3330 ENSMUSG00000013495.15 ENSMUSG00000013495 ENSMUST00000198346 Tmem175 protein_coding Interval_14357 chr10 31450777 31451713 + 0 NA exon (ENSMUSG00000111865.1, exon 1 of 1) TEC-exon (ENSMUSG00000111865.1, exon 1 of 1) 837 ENSMUSG00000111865.1 ENSMUSG00000111865 ENSMUST00000217582 Gm47687 TEC Interval_88507 chr2 5695294 5695809 + 0 NA intron (ENSMUSG00000039145.16, intron 1 of 1) protein_coding-intron (ENSMUSG00000039145.16, intron 1 of 10) 18952 ENSMUSG00000039145.16 ENSMUSG00000039145 ENSMUST00000155927 Camk1d protein_coding Interval_110630 chr4 5293678 5294370 + 0 NA Intergenic Intergenic 257199 ENSMUSG00000087099.1 ENSMUSG00000087099 ENSMUST00000131675 Gm11782 lincRNA Interval_142884 chr6 146666490 146667276 + 0 NA Intergenic Intergenic 9665 ENSMUSG00000085238.1 ENSMUSG00000085238 ENSMUST00000146754 4930479D17Rik lincRNA Interval_92895 chr2 68256395 68257179 + 0 NA intron (ENSMUSG00000027030.15, intron 9 of 10) protein_coding-intron (ENSMUSG00000027030.15, intron 16 of 17) 129894 ENSMUSG00000027030.15 ENSMUSG00000027030 ENSMUST00000149581 Stk39 protein_coding Interval_135114 chr6 35568298 35569118 + 0 NA Intergenic Intergenic -28909 ENSMUSG00000029840.8 ENSMUSG00000029840 ENSMUST00000201026 Mtpn protein_coding Interval_161133 chr8 117690938 117691715 + 0 NA exon (ENSMUSG00000110151.2, exon 8 of 8) lincRNA-exon (ENSMUSG00000110151.2, exon 8 of 8) 9476 ENSMUSG00000110151.2 ENSMUSG00000110151 ENSMUST00000212223 Gm38416 lincRNA Interval_174530 chrX 156841043 156841324 + 0 NA Intergenic Intergenic 52977 ENSMUSG00000084246.1 ENSMUSG00000084246 ENSMUST00000119325 Gm15162 processed_pseudogene Interval_116055 chr4 107293629 107294404 + 0 NA intron (ENSMUSG00000034785.14, intron 1 of 2) protein_coding-intron (ENSMUSG00000034785.14, intron 1 of 2) 13126 ENSMUSG00000034785.14 ENSMUSG00000034785 ENSMUST00000145332 Dio1 protein_coding Interval_79618 chr18 34038057 34039195 + 0 NA Intergenic Intergenic -8200 ENSMUSG00000118246.1 ENSMUSG00000118246 ENSMUST00000236132 Gm6052 processed_pseudogene Interval_104748 chr3 70158108 70158398 + 0 NA Intergenic Intergenic -41721 ENSMUSG00000103113.1 ENSMUSG00000103113 ENSMUST00000195440 Gm37585 processed_pseudogene Interval_17897 chr10 80658533 80659589 + 0 NA Intergenic Intergenic -11351 ENSMUSG00000003344.14 ENSMUSG00000003344 ENSMUST00000131876 Btbd2 protein_coding Interval_127457 chr5 104074555 104074863 + 0 NA exon (ENSMUSG00000091034.8, exon 4 of 10) protein_coding-exon (ENSMUSG00000091034.8, exon 4 of 10) -2384 ENSMUSG00000105261.1 ENSMUSG00000105261 ENSMUST00000198340 Gm43333 TEC Interval_167217 chr9 66257299 66257828 + 0 NA TTS (ENSMUSG00000032380.9) protein_coding-TTS (ENSMUSG00000032380.9) -92887 ENSMUSG00000038664.16 ENSMUSG00000038664 ENSMUST00000130854 Herc1 protein_coding Interval_91116 chr2 35200024 35201638 + 0 NA promoter-TSS (ENSMUSG00000026878.17) protein_coding-promoter-TSS (ENSMUSG00000026878.17) 145 ENSMUSG00000026878.17 ENSMUSG00000026878 ENSMUST00000126224 Rab14 protein_coding Interval_1750 chr1 33524106 33524535 + 0 NA intron (ENSMUSG00000026134.11, intron 2 of 5) protein_coding-intron (ENSMUSG00000026134.11, intron 8 of 13) 42219 ENSMUSG00000101682.1 ENSMUSG00000101682 ENSMUST00000185489 Gm29228 processed_pseudogene Interval_89889 chr2 26252553 26253234 + 0 NA intron (ENSMUSG00000048038.8, intron 21 of 26) protein_coding-intron (ENSMUSG00000048038.8, intron 20 of 25) -27522 ENSMUSG00000036327.18 ENSMUSG00000036327 ENSMUST00000036187 Qsox2 protein_coding Interval_122302 chr5 21054531 21056560 + 0 NA intron (ENSMUSG00000028771.13, intron 1 of 17) protein_coding-intron (ENSMUSG00000028771.13, intron 1 of 17) 352 ENSMUSG00000028771.13 ENSMUSG00000028771 ENSMUST00000140057 Ptpn12 protein_coding Interval_58344 chr15 32778606 32779583 + 0 NA exon (ENSMUSG00000115317.1, exon 1 of 4) lincRNA-exon (ENSMUSG00000115317.1, exon 1 of 4) 190 ENSMUSG00000115317.1 ENSMUSG00000115317 ENSMUST00000147013 Gm32618 lincRNA Interval_50308 chr14 11764849 11765236 + 0 NA intron (ENSMUSG00000021745.14, intron 2 of 3) protein_coding-intron (ENSMUSG00000021745.14, intron 2 of 29) -2901 ENSMUSG00000114310.1 ENSMUSG00000114310 ENSMUST00000225152 Gm48602 TEC Interval_112356 chr4 40803775 40804357 + 0 NA TTS (ENSMUSG00000028413.13) protein_coding-TTS (ENSMUSG00000028413.13) -28502 ENSMUSG00000056412.6 ENSMUSG00000056412 ENSMUST00000121600 Psenen-ps processed_pseudogene Interval_148594 chr7 82931300 82931651 + 0 NA Intergenic Intergenic 9213 ENSMUSG00000109106.1 ENSMUSG00000109106 ENSMUST00000209078 4933430H16Rik lincRNA Interval_74804 chr17 56641778 56642361 + 0 NA intron (ENSMUSG00000040828.10, intron 7 of 21) protein_coding-intron (ENSMUSG00000040828.10, intron 7 of 21) -9713 ENSMUSG00000040828.10 ENSMUSG00000040828 ENSMUST00000233947 Catsperd protein_coding Interval_71886 chr17 26780474 26781885 + 0 NA promoter-TSS (ENSMUSG00000024191.15) protein_coding-promoter-TSS (ENSMUSG00000024191.15) -5177 ENSMUSG00000024191.15 ENSMUSG00000024191 ENSMUST00000131362 Bnip1 protein_coding Interval_1061 chr1 14687804 14688657 + 0 NA Intergenic Intergenic -64707 ENSMUSG00000054493.2 ENSMUSG00000054493 ENSMUST00000067599 Gm9947 antisense Interval_98086 chr2 147803227 147803736 + 0 NA Intergenic Intergenic 71397 ENSMUSG00000065791.1 ENSMUSG00000065791 ENSMUST00000083857 Gm25516 snRNA Interval_95725 chr2 115161776 115163679 + 0 NA intron (ENSMUSG00000101448.1, intron 1 of 3) lincRNA-intron (ENSMUSG00000101448.1, intron 1 of 3) 27177 ENSMUSG00000099802.1 ENSMUSG00000099802 ENSMUST00000188427 Gm28493 lincRNA Interval_100421 chr2 168923851 168924223 + 0 NA intron (ENSMUSG00000027551.15, intron 5 of 8) protein_coding-intron (ENSMUSG00000027551.15, intron 5 of 8) 31229 ENSMUSG00000027551.15 ENSMUSG00000027551 ENSMUST00000136242 Zfp64 protein_coding Interval_140149 chr6 114870721 114871513 + 0 NA intron (ENSMUSG00000030315.15, intron 3 of 5) protein_coding-intron (ENSMUSG00000030315.15, intron 2 of 4) 50699 ENSMUSG00000030315.15 ENSMUSG00000030315 ENSMUST00000204693 Vgll4 protein_coding Interval_37057 chr12 57185286 57185698 + 0 NA intron (ENSMUSG00000035472.14, intron 1 of 9) protein_coding-intron (ENSMUSG00000035472.14, intron 1 of 9) -24849 ENSMUSG00000035472.14 ENSMUSG00000035472 ENSMUST00000160892 Slc25a21 protein_coding Interval_126097 chr5 77364343 77365355 + 0 NA intron (ENSMUSG00000036256.13, intron 1 of 4) protein_coding-intron (ENSMUSG00000036256.13, intron 1 of 4) -21750 ENSMUSG00000106828.1 ENSMUSG00000106828 ENSMUST00000202460 Gm34648 antisense Interval_53826 chr14 62349359 62350906 + 0 NA exon (ENSMUSG00000021932.13, exon 1 of 2) protein_coding-exon (ENSMUSG00000021932.13, exon 1 of 2) 18007 ENSMUSG00000021932.13 ENSMUSG00000021932 ENSMUST00000156608 Rnaseh2b protein_coding Interval_92035 chr2 52772214 52773067 + 0 NA Intergenic Intergenic -30450 ENSMUSG00000055371.17 ENSMUSG00000055371 ENSMUST00000138290 Stam2 protein_coding Interval_157699 chr8 72365356 72366410 + 0 NA intron (ENSMUSG00000006276.10, intron 21 of 21) protein_coding-intron (ENSMUSG00000006276.10, intron 21 of 23) 46850 ENSMUSG00000055148.7 ENSMUSG00000055148 ENSMUST00000067912 Klf2 protein_coding Interval_35167 chr12 17734430 17734635 + 0 NA intron (ENSMUSG00000071379.2, intron 1 of 4) protein_coding-intron (ENSMUSG00000071379.2, intron 1 of 3) 6306 ENSMUSG00000071379.2 ENSMUSG00000071379 ENSMUST00000222944 Hpcal1 protein_coding Interval_172725 chrX 47955506 47956006 + 0 NA intron (ENSMUSG00000001173.15, intron 16 of 16) protein_coding-intron (ENSMUSG00000001173.15, intron 18 of 23) 17365 ENSMUSG00000001173.15 ENSMUSG00000001173 ENSMUST00000115013 Ocrl protein_coding Interval_106848 chr3 101290734 101291609 + 0 NA Intergenic Intergenic -10782 ENSMUSG00000027863.8 ENSMUSG00000027863 ENSMUST00000152321 Cd2 protein_coding Interval_132081 chr5 142683412 142683987 + 0 NA Intergenic Intergenic -8813 ENSMUSG00000050822.11 ENSMUSG00000050822 ENSMUST00000058418 Slc29a4 protein_coding Interval_151399 chr7 122089440 122089661 + 0 NA TTS (ENSMUSG00000030869.11) protein_coding-TTS (ENSMUSG00000030869.11) -6533 ENSMUSG00000108573.1 ENSMUSG00000108573 ENSMUST00000206292 Gm44986 TEC Interval_128493 chr5 113638005 113638713 + 0 NA intron (ENSMUSG00000042190.12, intron 2 of 2) protein_coding-intron (ENSMUSG00000042190.12, intron 1 of 2) -6604 ENSMUSG00000085713.1 ENSMUSG00000085713 ENSMUST00000141710 Gm15736 antisense Interval_70156 chr17 5860064 5860830 + 0 NA intron (ENSMUSG00000002365.10, intron 1 of 17) protein_coding-intron (ENSMUSG00000002365.10, intron 1 of 17) 19095 ENSMUSG00000002365.10 ENSMUSG00000002365 ENSMUST00000231803 Snx9 protein_coding Interval_51827 chr14 32531002 32531952 + 0 NA intron (ENSMUSG00000054051.7, intron 5 of 5) protein_coding-intron (ENSMUSG00000054051.7, intron 5 of 20) -21098 ENSMUSG00000054051.7 ENSMUSG00000054051 ENSMUST00000228549 Ercc6 protein_coding Interval_98316 chr2 150966816 150967231 + 0 NA intron (ENSMUSG00000068115.13, intron 1 of 6) protein_coding-intron (ENSMUSG00000068115.13, intron 7 of 23) 4057 ENSMUSG00000068115.13 ENSMUSG00000068115 ENSMUST00000128627 Ninl protein_coding Interval_106618 chr3 97818901 97819601 + 0 NA intron (ENSMUSG00000038170.15, intron 1 of 1) protein_coding-intron (ENSMUSG00000038170.15, intron 4 of 46) 5370 ENSMUSG00000038170.15 ENSMUSG00000038170 ENSMUST00000163531 Pde4dip protein_coding Interval_34195 chr11 121201167 121202631 + 0 NA intron (ENSMUSG00000025169.6, intron 2 of 8) protein_coding-intron (ENSMUSG00000025169.6, intron 2 of 8) 2812 ENSMUSG00000025169.6 ENSMUSG00000025169 ENSMUST00000026169 Ogfod3 protein_coding Interval_76578 chr17 81498908 81499316 + 0 NA intron (ENSMUSG00000054640.15, intron 2 of 11) protein_coding-intron (ENSMUSG00000054640.15, intron 1 of 9) 57349 ENSMUSG00000079333.3 ENSMUSG00000079333 ENSMUST00000168858 Gm11096 protein_coding Interval_95047 chr2 103455856 103457199 + 0 NA intron (ENSMUSG00000027187.10, intron 4 of 5) protein_coding-intron (ENSMUSG00000027187.10, intron 11 of 12) 28598 ENSMUSG00000027187.10 ENSMUSG00000027187 ENSMUST00000111168 Cat protein_coding Interval_132292 chr5 143974602 143975764 + 0 NA intron (ENSMUSG00000075569.10, intron 6 of 9) protein_coding-intron (ENSMUSG00000075569.10, intron 16 of 20) 5808 ENSMUSG00000091351.1 ENSMUSG00000091351 ENSMUST00000167009 Gm17135 antisense Interval_113333 chr4 53515553 53516206 + 0 NA intron (ENSMUSG00000028412.17, intron 3 of 15) protein_coding-intron (ENSMUSG00000028412.17, intron 3 of 15) 48818 ENSMUSG00000084970.1 ENSMUSG00000084970 ENSMUST00000138377 1700060J05Rik antisense Interval_47081 chr13 75478040 75478451 + 0 NA TTS (ENSMUSG00000113821.1) processed_pseudogene-TTS (ENSMUSG00000113821.1) 1142 ENSMUSG00000113821.1 ENSMUSG00000113821 ENSMUST00000221326 Gm48234 processed_pseudogene Interval_88402 chr2 4819916 4820220 + 0 NA Intergenic Intergenic 14544 ENSMUSG00000083407.1 ENSMUSG00000083407 ENSMUST00000117910 Gm13176 processed_pseudogene Interval_22518 chr11 11392959 11393439 + 0 NA intron (ENSMUSG00000020193.3, intron 6 of 7) protein_coding-intron (ENSMUSG00000020193.3, intron 6 of 7) 34313 ENSMUSG00000064766.1 ENSMUSG00000064766 ENSMUST00000082832 Gm26458 snoRNA Interval_104984 chr3 79509364 79509971 + 0 NA intron (ENSMUSG00000061175.12, intron 5 of 12) protein_coding-intron (ENSMUSG00000061175.12, intron 5 of 16) 22209 ENSMUSG00000061175.12 ENSMUSG00000061175 ENSMUST00000139171 Fnip2 protein_coding Interval_110748 chr4 8005306 8005584 + 0 NA Intergenic Intergenic -113175 ENSMUSG00000083068.1 ENSMUSG00000083068 ENSMUST00000120050 Gm11800 processed_pseudogene Interval_170986 chr9 113506984 113507771 + 0 NA intron (ENSMUSG00000109890.2, intron 2 of 4) lincRNA-intron (ENSMUSG00000109890.2, intron 2 of 4) 978 ENSMUSG00000109890.2 ENSMUSG00000109890 ENSMUST00000209716 AU023762 lincRNA Interval_153170 chr7 142037704 142038374 + 0 NA intron (ENSMUSG00000025147.7, intron 1 of 5) protein_coding-intron (ENSMUSG00000025147.7, intron 1 of 4) -12088 ENSMUSG00000025147.7 ENSMUSG00000025147 ENSMUST00000211505 Mob2 protein_coding Interval_150424 chr7 110404691 110405010 + 0 NA intron (ENSMUSG00000038371.15, intron 17 of 18) protein_coding-intron (ENSMUSG00000038371.15, intron 16 of 40) -20187 ENSMUSG00000091117.1 ENSMUSG00000091117 ENSMUST00000163579 Gm9064 processed_pseudogene Interval_13393 chr10 17733869 17734888 + 0 NA Intergenic Intergenic 11145 ENSMUSG00000039910.10 ENSMUSG00000039910 ENSMUST00000218370 Cited2 protein_coding Interval_7309 chr1 128748024 128748770 + 0 NA Intergenic Intergenic -2529 ENSMUSG00000099403.1 ENSMUSG00000099403 ENSMUST00000185285 Gm29599 processed_pseudogene Interval_22114 chr11 6420472 6421430 + 0 NA Intergenic Intergenic 4639 ENSMUSG00000071866.12 ENSMUSG00000071866 ENSMUST00000213200 Ppia protein_coding Interval_109647 chr3 145723623 145724464 + 0 NA Intergenic Intergenic 15123 ENSMUSG00000105608.1 ENSMUSG00000105608 ENSMUST00000198263 Gm43408 processed_pseudogene Interval_92582 chr2 60862762 60862999 + 0 NA intron (ENSMUSG00000026970.16, intron 1 of 13) protein_coding-intron (ENSMUSG00000026970.16, intron 1 of 13) 18558 ENSMUSG00000026970.16 ENSMUSG00000026970 ENSMUST00000128866 Rbms1 protein_coding Interval_87170 chr19 46579551 46582300 + 0 NA intron (ENSMUSG00000025036.7, intron 1 of 9) protein_coding-intron (ENSMUSG00000025036.7, intron 1 of 11) -1978 ENSMUSG00000025036.7 ENSMUSG00000025036 ENSMUST00000237001 Sfxn2 protein_coding Interval_159458 chr8 94854976 94855404 + 0 NA TTS (ENSMUSG00000031782.15) protein_coding-TTS (ENSMUSG00000031782.15) 2068 ENSMUSG00000031782.15 ENSMUSG00000031782 ENSMUST00000161208 Coq9 protein_coding Interval_171305 chr9 116240160 116240611 + 0 NA intron (ENSMUSG00000111324.1, intron 3 of 3) lincRNA-intron (ENSMUSG00000111324.1, intron 3 of 3) 21583 ENSMUSG00000111324.1 ENSMUSG00000111324 ENSMUST00000217302 Gm31410 lincRNA Interval_140257 chr6 115837650 115839119 + 0 NA promoter-TSS (ENSMUSG00000030321.15) protein_coding-promoter-TSS (ENSMUSG00000030321.15) 28 ENSMUSG00000030321.15 ENSMUSG00000030321 ENSMUST00000184428 Efcab12 protein_coding Interval_167780 chr9 72677930 72678863 + 0 NA intron (ENSMUSG00000032216.15, intron 5 of 7) protein_coding-intron (ENSMUSG00000032216.15, intron 5 of 28) -8828 ENSMUSG00000104273.1 ENSMUSG00000104273 ENSMUST00000195338 A530064N14Rik TEC Interval_168186 chr9 77820987 77821310 + 0 NA Intergenic Intergenic -11355 ENSMUSG00000111253.1 ENSMUSG00000111253 ENSMUST00000217012 Gm34654 lincRNA Interval_88187 chr19 60499938 60500318 + 0 NA Intergenic Intergenic -31824 ENSMUSG00000045052.3 ENSMUSG00000045052 ENSMUST00000051277 Prlhr protein_coding Interval_134181 chr6 22391828 22392183 + 0 NA Intergenic Intergenic -48092 ENSMUSG00000029672.16 ENSMUSG00000029672 ENSMUST00000168965 Fam3c protein_coding Interval_114769 chr4 84914021 84914946 + 0 NA intron (ENSMUSG00000038070.15, intron 2 of 25) protein_coding-intron (ENSMUSG00000038070.15, intron 2 of 25) -1413 ENSMUSG00000083139.1 ENSMUSG00000083139 ENSMUST00000118116 Gm12418 processed_pseudogene Interval_5003 chr1 84119078 84119284 + 0 NA intron (ENSMUSG00000045658.16, intron 4 of 4) protein_coding-intron (ENSMUSG00000045658.16, intron 2 of 2) 15329 ENSMUSG00000102750.1 ENSMUSG00000102750 ENSMUST00000193393 Gm37058 TEC Interval_160636 chr8 111245880 111246891 + 0 NA intron (ENSMUSG00000003316.14, intron 1 of 25) protein_coding-intron (ENSMUSG00000003316.14, intron 1 of 24) 12831 ENSMUSG00000003316.14 ENSMUSG00000003316 ENSMUST00000003404 Glg1 protein_coding Interval_65882 chr16 30039114 30039967 + 0 NA promoter-TSS (ENSMUSG00000116660.1) lincRNA-promoter-TSS (ENSMUSG00000116660.1) -61 ENSMUSG00000116660.1 ENSMUSG00000116660 ENSMUST00000232465 9030404E10Rik lincRNA Interval_27640 chr11 69227556 69228456 + 0 NA intron (ENSMUSG00000020890.11, intron 10 of 10) protein_coding-intron (ENSMUSG00000020890.11, intron 10 of 18) 9016 ENSMUSG00000020890.11 ENSMUSG00000020890 ENSMUST00000155457 Gucy2e protein_coding Interval_97349 chr2 135231568 135231792 + 0 NA intron (ENSMUSG00000051177.16, intron 4 of 6) protein_coding-intron (ENSMUSG00000051177.16, intron 4 of 31) -16064 ENSMUSG00000085247.1 ENSMUSG00000085247 ENSMUST00000138303 4930545L23Rik antisense Interval_111591 chr4 24154491 24155102 + 0 NA Intergenic Intergenic -83304 ENSMUSG00000083154.1 ENSMUSG00000083154 ENSMUST00000117711 Gm11892 processed_pseudogene Interval_145305 chr7 31590736 31591637 + 0 NA Intergenic Intergenic -12108 ENSMUSG00000100734.1 ENSMUSG00000100734 ENSMUST00000186144 Rpl23a-ps8 processed_pseudogene Interval_55485 chr14 88469169 88471287 + 0 NA intron (ENSMUSG00000050505.7, intron 1 of 1) protein_coding-intron (ENSMUSG00000050505.7, intron 2 of 2) 1118 ENSMUSG00000050505.7 ENSMUSG00000050505 ENSMUST00000192557 Pcdh20 protein_coding Interval_169848 chr9 102465507 102466794 + 0 NA Intergenic Intergenic -20640 ENSMUSG00000111859.1 ENSMUSG00000111859 ENSMUST00000213941 Gm47983 TEC Interval_45145 chr13 52658383 52659125 + 0 NA Intergenic Intergenic 75251 ENSMUSG00000021457.14 ENSMUSG00000021457 ENSMUST00000140339 Syk protein_coding Interval_108638 chr3 129692739 129693425 + 0 NA promoter-TSS (ENSMUSG00000028017.7) protein_coding-promoter-TSS (ENSMUSG00000028017.7) -8841 ENSMUSG00000092701.1 ENSMUSG00000092701 ENSMUST00000174960 Gm24515 miRNA Interval_164607 chr9 39976332 39977367 + 0 NA Intergenic Intergenic -2028 ENSMUSG00000111073.1 ENSMUSG00000111073 ENSMUST00000217438 Olfr977-ps1 polymorphic_pseudogene Interval_144757 chr7 28049654 28050766 + 0 NA promoter-TSS (ENSMUSG00000030603.16) protein_coding-promoter-TSS (ENSMUSG00000030603.16) -162 ENSMUSG00000030603.16 ENSMUSG00000030603 ENSMUST00000126528 Psmc4 protein_coding Interval_162477 chr8 129253022 129253259 + 0 NA exon (ENSMUSG00000094530.2, exon 1 of 1) processed_pseudogene-exon (ENSMUSG00000094530.2, exon 1 of 1) 142 ENSMUSG00000094530.2 ENSMUSG00000094530 ENSMUST00000180210 Gm21399 processed_pseudogene Interval_146193 chr7 44623253 44625250 + 0 NA intron (ENSMUSG00000030739.18, intron 29 of 40) protein_coding-intron (ENSMUSG00000030739.18, intron 30 of 41) 8534 ENSMUSG00000030739.18 ENSMUSG00000030739 ENSMUST00000208131 Myh14 protein_coding Interval_1565 chr1 26388423 26388716 + 0 NA Intergenic Intergenic -77667 ENSMUSG00000099458.1 ENSMUSG00000099458 ENSMUST00000190716 Gm19123 processed_pseudogene Interval_72364 chr17 29430186 29430971 + 0 NA TTS (ENSMUSG00000117575.1) processed_transcript-TTS (ENSMUSG00000117575.1) 4179 ENSMUSG00000117575.1 ENSMUSG00000117575 ENSMUST00000234181 Gm36486 processed_transcript Interval_157526 chr8 71205177 71206208 + 0 NA Intergenic Intergenic -18257 ENSMUSG00000110664.1 ENSMUSG00000110664 ENSMUST00000212311 Aprt-ps processed_pseudogene Interval_122599 chr5 24103284 24103737 + 0 NA intron (ENSMUSG00000028986.12, intron 1 of 11) protein_coding-intron (ENSMUSG00000028986.12, intron 1 of 10) 2904 ENSMUSG00000028986.12 ENSMUSG00000028986 ENSMUST00000199530 Klhl7 protein_coding Interval_129000 chr5 116554079 116554301 + 0 NA intron (ENSMUSG00000063919.11, intron 1 of 12) protein_coding-intron (ENSMUSG00000063919.11, intron 1 of 12) 19305 ENSMUSG00000106914.1 ENSMUSG00000106914 ENSMUST00000201262 Gm42854 sense_intronic Interval_729 chr1 10226123 10227569 + 0 NA intron (ENSMUSG00000067851.11, intron 1 of 19) protein_coding-intron (ENSMUSG00000067851.11, intron 1 of 37) -28044 ENSMUSG00000102556.1 ENSMUSG00000102556 ENSMUST00000192111 Gm37569 TEC Interval_118520 chr4 132238136 132239042 + 0 NA intron (ENSMUSG00000028901.13, intron 4 of 9) protein_coding-intron (ENSMUSG00000028901.13, intron 3 of 8) 6677 ENSMUSG00000084105.1 ENSMUSG00000084105 ENSMUST00000119355 Gm13252 processed_pseudogene Interval_163750 chr9 25251620 25253465 + 0 NA promoter-TSS (ENSMUSG00000001833.17) protein_coding-promoter-TSS (ENSMUSG00000001833.17) -124 ENSMUSG00000001833.17 ENSMUSG00000001833 ENSMUST00000214360 Septin7 protein_coding Interval_25774 chr11 51635518 51636565 + 0 NA promoter-TSS (ENSMUSG00000001054.9) protein_coding-promoter-TSS (ENSMUSG00000001054.9) -10207 ENSMUSG00000001054.9 ENSMUSG00000001054 ENSMUST00000132854 Rmnd5b protein_coding Interval_138049 chr6 84615354 84616398 + 0 NA Intergenic Intergenic -28196 ENSMUSG00000063415.12 ENSMUSG00000063415 ENSMUST00000204109 Cyp26b1 protein_coding Interval_93995 chr2 80570725 80570936 + 0 NA intron (ENSMUSG00000027002.13, intron 1 of 30) protein_coding-intron (ENSMUSG00000027002.13, intron 1 of 30) 12145 ENSMUSG00000064669.1 ENSMUSG00000064669 ENSMUST00000082735 Gm24461 snRNA Interval_76679 chr17 83441256 83441424 + 0 NA exon (ENSMUSG00000032624.16, exon 6 of 21) protein_coding-exon (ENSMUSG00000032624.16, exon 6 of 21) -14961 ENSMUSG00000032624.16 ENSMUSG00000032624 ENSMUST00000235121 Eml4 protein_coding Interval_89326 chr2 19371174 19372151 + 0 NA promoter-TSS (ENSMUSG00000023094.14) protein_coding-promoter-TSS (ENSMUSG00000023094.14) -179 ENSMUSG00000023094.14 ENSMUSG00000023094 ENSMUST00000153289 Msrb2 protein_coding Interval_149751 chr7 101192932 101193117 + 0 NA TTS (ENSMUSG00000030691.15) protein_coding-TTS (ENSMUSG00000030691.15) -37969 ENSMUSG00000083121.3 ENSMUSG00000083121 ENSMUST00000119683 Gm6341 processed_pseudogene Interval_70743 chr17 14109769 14110001 + 0 NA Intergenic Intergenic -3435 ENSMUSG00000099476.1 ENSMUSG00000099476 ENSMUST00000188802 4930488N24Rik unprocessed_pseudogene Interval_156061 chr8 43289147 43289873 + 0 NA Intergenic Intergenic 17426 ENSMUSG00000051176.6 ENSMUSG00000051176 ENSMUST00000082120 Zfp42 protein_coding Interval_55808 chr14 100374884 100375722 + 0 NA Intergenic Intergenic -43180 ENSMUSG00000094585.1 ENSMUSG00000094585 ENSMUST00000104165 Gm26367 snoRNA Interval_16340 chr10 62338206 62338925 + 0 NA intron (ENSMUSG00000037012.18, intron 5 of 5) protein_coding-intron (ENSMUSG00000037012.18, intron 2 of 19) -2042 ENSMUSG00000085347.1 ENSMUSG00000085347 ENSMUST00000142968 Hk1os antisense Interval_129669 chr5 121635161 121635364 + 0 NA promoter-TSS (ENSMUSG00000029456.12) protein_coding-promoter-TSS (ENSMUSG00000029456.12) -2483 ENSMUSG00000029456.12 ENSMUSG00000029456 ENSMUST00000137231 Acad10 protein_coding Interval_162300 chr8 126885336 126886267 + 0 NA intron (ENSMUSG00000110697.1, intron 1 of 4) lincRNA-intron (ENSMUSG00000110697.1, intron 1 of 4) 22414 ENSMUSG00000110697.1 ENSMUSG00000110697 ENSMUST00000212639 Gm31718 lincRNA Interval_40418 chr12 104751314 104752737 + 0 NA promoter-TSS (ENSMUSG00000041415.10) protein_coding-promoter-TSS (ENSMUSG00000041415.10) -29973 ENSMUSG00000041415.10 ENSMUSG00000041415 ENSMUST00000222002 Dicer1 protein_coding Interval_64864 chr16 16727514 16728947 + 0 NA Intergenic Intergenic -10134 ENSMUSG00000116096.1 ENSMUSG00000116096 ENSMUST00000230601 4933404G15Rik lincRNA Interval_171504 chr9 118907622 118908730 + 0 NA intron (ENSMUSG00000086119.2, intron 1 of 3) antisense-intron (ENSMUSG00000086119.2, intron 1 of 3) -16697 ENSMUSG00000087041.1 ENSMUSG00000087041 ENSMUST00000139512 Gm16295 lincRNA Interval_2497 chr1 39749669 39750208 + 0 NA Intergenic Intergenic -28941 ENSMUSG00000057173.8 ENSMUSG00000057173 ENSMUST00000126760 Rfx8 protein_coding Interval_155437 chr8 33606932 33607740 + 0 NA intron (ENSMUSG00000009630.10, intron 1 of 6) protein_coding-intron (ENSMUSG00000009630.10, intron 1 of 6) 7711 ENSMUSG00000009630.10 ENSMUSG00000009630 ENSMUST00000009774 Ppp2cb protein_coding Interval_31406 chr11 100502654 100503072 + 0 NA intron (ENSMUSG00000020917.17, intron 14 of 14) protein_coding-intron (ENSMUSG00000020917.17, intron 13 of 27) 20735 ENSMUSG00000020917.17 ENSMUSG00000020917 ENSMUST00000107385 Acly protein_coding Interval_59751 chr15 59033760 59034037 + 0 NA intron (ENSMUSG00000022353.10, intron 3 of 14) protein_coding-intron (ENSMUSG00000022353.10, intron 3 of 14) 48107 ENSMUSG00000022353.10 ENSMUSG00000022353 ENSMUST00000227797 Mtss1 protein_coding Interval_45356 chr13 54634418 54634767 + 0 NA intron (ENSMUSG00000025873.16, intron 2 of 5) protein_coding-intron (ENSMUSG00000025873.16, intron 1 of 10) 12791 ENSMUSG00000025873.16 ENSMUSG00000025873 ENSMUST00000141915 Faf2 protein_coding Interval_36120 chr12 36061478 36062469 + 0 NA Intergenic Intergenic -22038 ENSMUSG00000020577.17 ENSMUSG00000020577 ENSMUST00000222584 Tspan13 protein_coding Interval_21140 chr10 126840066 126840531 + 0 NA TTS (ENSMUSG00000089550.1) snoRNA-TTS (ENSMUSG00000089550.1) 203 ENSMUSG00000089550.1 ENSMUSG00000089550 ENSMUST00000158925 Gm24179 snoRNA Interval_149867 chr7 102099806 102100852 + 0 NA promoter-TSS (ENSMUSG00000070424.12) protein_coding-promoter-TSS (ENSMUSG00000070424.12) -1414 ENSMUSG00000030996.8 ENSMUSG00000030996 ENSMUST00000209809 Art1 protein_coding Interval_6717 chr1 118955917 118956263 + 0 NA intron (ENSMUSG00000048402.14, intron 2 of 6) protein_coding-intron (ENSMUSG00000048402.14, intron 2 of 13) 1870 ENSMUSG00000098273.1 ENSMUSG00000098273 ENSMUST00000183982 Mir6346 miRNA Interval_57644 chr15 13125930 13126160 + 0 NA intron (ENSMUSG00000039385.5, intron 1 of 3) protein_coding-intron (ENSMUSG00000039385.5, intron 1 of 11) 47630 ENSMUSG00000039385.5 ENSMUSG00000039385 ENSMUST00000226917 Cdh6 protein_coding Interval_123236 chr5 30806113 30806505 + 0 NA Intergenic Intergenic -9311 ENSMUSG00000106229.1 ENSMUSG00000106229 ENSMUST00000198244 Gm19409 sense_intronic Interval_113329 chr4 53500641 53501175 + 0 NA intron (ENSMUSG00000028412.17, intron 3 of 15) protein_coding-intron (ENSMUSG00000028412.17, intron 3 of 15) 60237 ENSMUSG00000028412.17 ENSMUSG00000028412 ENSMUST00000133582 Slc44a1 protein_coding Interval_60436 chr15 73742829 73743107 + 0 NA intron (ENSMUSG00000059895.13, intron 1 of 5) protein_coding-intron (ENSMUSG00000059895.13, intron 1 of 5) -4750 ENSMUSG00000059895.13 ENSMUSG00000059895 ENSMUST00000053232 Ptp4a3 protein_coding Interval_109989 chr3 152336078 152336904 + 0 NA TTS (ENSMUSG00000054942.13) protein_coding-TTS (ENSMUSG00000054942.13) 3893 ENSMUSG00000054942.13 ENSMUSG00000054942 ENSMUST00000200241 Miga1 protein_coding Interval_65977 chr16 30661279 30661532 + 0 NA Intergenic Intergenic 61682 ENSMUSG00000046546.3 ENSMUSG00000046546 ENSMUST00000059078 Fam43a protein_coding Interval_114299 chr4 71699410 71699785 + 0 NA Intergenic Intergenic 21584 ENSMUSG00000082432.1 ENSMUSG00000082432 ENSMUST00000117895 Gm11231 processed_pseudogene Interval_79716 chr18 34695373 34696053 + 0 NA exon (ENSMUSG00000024366.8, exon 4 of 8) protein_coding-exon (ENSMUSG00000024366.8, exon 4 of 8) 24674 ENSMUSG00000024366.8 ENSMUSG00000024366 ENSMUST00000025224 Gfra3 protein_coding Interval_65224 chr16 20663572 20664914 + 0 NA TTS (ENSMUSG00000006998.16) protein_coding-TTS (ENSMUSG00000006998.16) 489 ENSMUSG00000090319.2 ENSMUSG00000090319 ENSMUST00000166453 Gm4462 processed_pseudogene Interval_21347 chr10 128096616 128097789 + 0 NA intron (ENSMUSG00000040054.17, intron 2 of 29) protein_coding-intron (ENSMUSG00000040054.17, intron 2 of 29) 5620 ENSMUSG00000040054.17 ENSMUSG00000040054 ENSMUST00000219980 Baz2a protein_coding Interval_15527 chr10 50775372 50775710 + 0 NA intron (ENSMUSG00000038774.9, intron 3 of 5) protein_coding-intron (ENSMUSG00000038774.9, intron 36 of 41) 17357 ENSMUSG00000112918.1 ENSMUSG00000112918 ENSMUST00000220079 Gm18120 processed_pseudogene Interval_95927 chr2 118486908 118488101 + 0 NA Intergenic Intergenic -3327 ENSMUSG00000084028.1 ENSMUSG00000084028 ENSMUST00000118018 Gm13983 processed_pseudogene Interval_10818 chr1 175601437 175602473 + 0 NA intron (ENSMUSG00000026526.14, intron 3 of 3) protein_coding-intron (ENSMUSG00000026526.14, intron 9 of 9) 7758 ENSMUSG00000026526.14 ENSMUSG00000026526 ENSMUST00000154956 Fh1 protein_coding Interval_89001 chr2 14218268 14218669 + 0 NA intron (ENSMUSG00000061531.8, intron 3 of 3) protein_coding-intron (ENSMUSG00000061531.8, intron 3 of 3) -28705 ENSMUSG00000083545.2 ENSMUSG00000083545 ENSMUST00000120155 Gm13320 TEC Interval_112014 chr4 33247462 33249022 + 0 NA promoter-TSS (ENSMUSG00000040128.9) protein_coding-promoter-TSS (ENSMUSG00000040128.9) -667 ENSMUSG00000040128.9 ENSMUSG00000040128 ENSMUST00000137589 Pnrc1 protein_coding Interval_98693 chr2 154351496 154352048 + 0 NA intron (ENSMUSG00000027487.11, intron 3 of 3) protein_coding-intron (ENSMUSG00000027487.11, intron 9 of 13) 2572 ENSMUSG00000027487.11 ENSMUSG00000027487 ENSMUST00000137918 Cdk5rap1 protein_coding Interval_25661 chr11 50523365 50523601 + 0 NA Intergenic Intergenic -12306 ENSMUSG00000089366.1 ENSMUSG00000089366 ENSMUST00000158741 Gm23824 misc_RNA Interval_48416 chr13 98896842 98897756 + 0 NA intron (ENSMUSG00000009470.17, intron 1 of 6) protein_coding-intron (ENSMUSG00000009470.17, intron 1 of 23) -6925 ENSMUSG00000062461.7 ENSMUSG00000062461 ENSMUST00000080866 Rpl27a-ps4 processed_pseudogene Interval_9430 chr1 157041459 157042572 + 0 NA intron (ENSMUSG00000101768.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000101768.1, intron 1 of 2) -1532 ENSMUSG00000103325.1 ENSMUSG00000103325 ENSMUST00000193527 Gm10531 TEC Interval_152435 chr7 133012740 133014253 + 0 NA TTS (ENSMUSG00000030970.16) protein_coding-TTS (ENSMUSG00000030970.16) -29944 ENSMUSG00000085663.1 ENSMUSG00000085663 ENSMUST00000131085 Gm15718 antisense Interval_30461 chr11 94512792 94513004 + 0 NA intron (ENSMUSG00000039110.15, intron 4 of 18) protein_coding-intron (ENSMUSG00000039110.15, intron 4 of 18) 8658 ENSMUSG00000039110.15 ENSMUSG00000039110 ENSMUST00000151993 Mycbpap protein_coding Interval_61763 chr15 83929971 83930982 + 0 NA intron (ENSMUSG00000022441.17, intron 3 of 3) protein_coding-intron (ENSMUSG00000022441.17, intron 2 of 14) 16123 ENSMUSG00000022441.17 ENSMUSG00000022441 ENSMUST00000122836 Efcab6 protein_coding Interval_18863 chr10 91424895 91426839 + 0 NA Intergenic Intergenic 2513 ENSMUSG00000111591.1 ENSMUSG00000111591 ENSMUST00000215290 Gm47083 processed_pseudogene Interval_105010 chr3 79744658 79744909 + 0 NA Intergenic Intergenic -67907 ENSMUSG00000098204.1 ENSMUSG00000098204 ENSMUST00000182345 Gm26984 sense_intronic Interval_74069 chr17 46392829 46393268 + 0 NA intron (ENSMUSG00000015597.17, intron 2 of 7) protein_coding-intron (ENSMUSG00000015597.17, intron 2 of 9) -7008 ENSMUSG00000015597.17 ENSMUSG00000015597 ENSMUST00000136017 Zfp318 protein_coding Interval_137052 chr6 66964364 66964778 + 0 NA intron (ENSMUSG00000036402.13, intron 3 of 4) protein_coding-intron (ENSMUSG00000036402.13, intron 3 of 4) 43842 ENSMUSG00000107634.1 ENSMUSG00000107634 ENSMUST00000204824 Gm36816 antisense Interval_70295 chr17 8300060 8300709 + 0 NA intron (ENSMUSG00000087478.1, intron 1 of 4) processed_transcript-intron (ENSMUSG00000087478.1, intron 1 of 1) 10668 ENSMUSG00000087478.1 ENSMUSG00000087478 ENSMUST00000123341 4930506C21Rik processed_transcript Interval_67742 chr16 56747103 56747612 + 0 NA intron (ENSMUSG00000022755.4, intron 11 of 15) protein_coding-intron (ENSMUSG00000022755.4, intron 11 of 15) -10908 ENSMUSG00000082485.1 ENSMUSG00000082485 ENSMUST00000120470 Gm15693 processed_pseudogene Interval_5051 chr1 84687327 84687585 + 0 NA intron (ENSMUSG00000036766.12, intron 1 of 4) protein_coding-intron (ENSMUSG00000036766.12, intron 1 of 12) -8383 ENSMUSG00000093254.1 ENSMUSG00000093254 ENSMUST00000175513 Mir5126 miRNA Interval_11376 chr1 181364997 181365307 + 0 NA intron (ENSMUSG00000026514.14, intron 1 of 5) protein_coding-intron (ENSMUSG00000026514.14, intron 1 of 5) 11726 ENSMUSG00000026514.14 ENSMUSG00000026514 ENSMUST00000209607 Cnih3 protein_coding Interval_22222 chr11 7267357 7268125 + 0 NA Intergenic Intergenic 22633 ENSMUSG00000087637.1 ENSMUSG00000087637 ENSMUST00000149481 Gm11986 lincRNA Interval_113509 chr4 55423323 55424280 + 0 NA Intergenic Intergenic -4959 ENSMUSG00000087070.1 ENSMUSG00000087070 ENSMUST00000146041 Gm12505 lincRNA Interval_120772 chr4 150562658 150563320 + 0 NA intron (ENSMUSG00000039852.17, intron 11 of 22) protein_coding-intron (ENSMUSG00000039852.17, intron 5 of 16) 5555 ENSMUSG00000085213.1 ENSMUSG00000085213 ENSMUST00000128800 Gm13091 antisense Interval_7202 chr1 127783931 127784571 + 0 NA intron (ENSMUSG00000026349.14, intron 2 of 4) protein_coding-intron (ENSMUSG00000026349.14, intron 2 of 8) -10197 ENSMUSG00000102014.1 ENSMUSG00000102014 ENSMUST00000185310 2900009J06Rik antisense Interval_33737 chr11 118202210 118203209 + 0 NA intron (ENSMUSG00000017132.17, intron 1 of 12) protein_coding-intron (ENSMUSG00000017132.17, intron 1 of 12) 2470 ENSMUSG00000080810.1 ENSMUSG00000080810 ENSMUST00000118713 Gm11737 processed_pseudogene Interval_33122 chr11 114586626 114586830 + 0 NA Intergenic Intergenic -77880 ENSMUSG00000083769.1 ENSMUSG00000083769 ENSMUST00000120766 Gm11689 processed_pseudogene Interval_153364 chr7 143988683 143988887 + 0 NA Intergenic Intergenic -20469 ENSMUSG00000093221.1 ENSMUSG00000093221 ENSMUST00000175480 Mir3105 miRNA Interval_123918 chr5 36538689 36539360 + 0 NA intron (ENSMUSG00000029192.17, intron 3 of 13) protein_coding-intron (ENSMUSG00000029192.17, intron 3 of 13) -31362 ENSMUSG00000029192.17 ENSMUSG00000029192 ENSMUST00000147603 Tbc1d14 protein_coding Interval_122862 chr5 26413159 26414368 + 0 NA Intergenic Intergenic 58345 ENSMUSG00000105786.1 ENSMUSG00000105786 ENSMUST00000197623 Gm18957 processed_pseudogene Interval_141429 chr6 128227357 128228046 + 0 NA TTS (ENSMUSG00000030353.15) protein_coding-TTS (ENSMUSG00000030353.15) -13687 ENSMUSG00000108280.1 ENSMUSG00000108280 ENSMUST00000203793 Gm8703 processed_pseudogene Interval_100798 chr2 172582804 172583976 + 0 NA Intergenic Intergenic 32399 ENSMUSG00000028640.11 ENSMUSG00000028640 ENSMUST00000142633 Tfap2c protein_coding Interval_135813 chr6 47521375 47521591 + 0 NA intron (ENSMUSG00000029686.15, intron 2 of 2) protein_coding-intron (ENSMUSG00000029686.15, intron 17 of 21) 1787 ENSMUSG00000029686.15 ENSMUSG00000029686 ENSMUST00000149531 Cul1 protein_coding Interval_103962 chr3 55567573 55567763 + 0 NA Intergenic Intergenic -7253 ENSMUSG00000105627.1 ENSMUSG00000105627 ENSMUST00000197139 Gm43548 TEC Interval_34702 chr12 8781560 8783166 + 0 NA intron (ENSMUSG00000020592.14, intron 2 of 3) protein_coding-intron (ENSMUSG00000020592.14, intron 1 of 4) 10950 ENSMUSG00000020592.14 ENSMUSG00000020592 ENSMUST00000160348 Sdc1 protein_coding Interval_142571 chr6 143414562 143415607 + 0 NA Intergenic Intergenic 50313 ENSMUSG00000077241.1 ENSMUSG00000077241 ENSMUST00000104053 Gm23272 snoRNA Interval_34790 chr12 11216094 11217086 + 0 NA Intergenic Intergenic 5620 ENSMUSG00000103287.1 ENSMUSG00000103287 ENSMUST00000192736 1700034J04Rik TEC Interval_51771 chr14 32104381 32105806 + 0 NA Intergenic Intergenic 19308 ENSMUSG00000021906.14 ENSMUSG00000021906 ENSMUST00000164396 Oxnad1 protein_coding Interval_56792 chr14 122120604 122121824 + 0 NA promoter-TSS (ENSMUSG00000090674.1) processed_pseudogene-promoter-TSS (ENSMUSG00000090674.1) -339 ENSMUSG00000090674.1 ENSMUSG00000090674 ENSMUST00000166043 Gm17082 processed_pseudogene Interval_116005 chr4 106934302 106935370 + 0 NA intron (ENSMUSG00000061887.14, intron 1 of 4) protein_coding-intron (ENSMUSG00000061887.14, intron 4 of 17) -86916 ENSMUSG00000086940.1 ENSMUSG00000086940 ENSMUST00000151369 Gm12746 lincRNA Interval_167476 chr9 69715530 69715720 + 0 NA Intergenic Intergenic 45315 ENSMUSG00000059246.4 ENSMUSG00000059246 ENSMUST00000071281 Foxb1 protein_coding Interval_141666 chr6 132932140 132932696 + 0 NA Intergenic Intergenic -1549 ENSMUSG00000108261.1 ENSMUSG00000108261 ENSMUST00000203065 Tas2r146-ps1 unprocessed_pseudogene Interval_116491 chr4 114637189 114637382 + 0 NA Intergenic Intergenic 36055 ENSMUSG00000100998.1 ENSMUSG00000100998 ENSMUST00000189251 Gm28864 lincRNA Interval_117433 chr4 123653241 123655590 + 0 NA intron (ENSMUSG00000028649.21, intron 1 of 97) protein_coding-intron (ENSMUSG00000028649.21, intron 1 of 92) -11466 ENSMUSG00000087307.1 ENSMUSG00000087307 ENSMUST00000138861 Gm12925 antisense Interval_19054 chr10 94105186 94105657 + 0 NA intron (ENSMUSG00000020021.4, intron 7 of 20) protein_coding-intron (ENSMUSG00000020021.4, intron 7 of 20) -3318 ENSMUSG00000111539.1 ENSMUSG00000111539 ENSMUST00000214721 Gm48372 TEC Interval_27590 chr11 68900933 68901931 + 0 NA promoter-TSS (ENSMUSG00000060938.14) protein_coding-promoter-TSS (ENSMUSG00000060938.14) -203 ENSMUSG00000060938.14 ENSMUSG00000060938 ENSMUST00000138973 Rpl26 protein_coding Interval_43299 chr13 28872509 28872719 + 0 NA intron (ENSMUSG00000085936.7, intron 2 of 7) processed_transcript-intron (ENSMUSG00000085936.7, intron 1 of 5) 25331 ENSMUSG00000113352.1 ENSMUSG00000113352 ENSMUST00000223473 Gm34639 lincRNA Interval_22204 chr11 7150644 7150891 + 0 NA intron (ENSMUSG00000020431.5, intron 13 of 19) protein_coding-intron (ENSMUSG00000020431.5, intron 13 of 19) -9115 ENSMUSG00000020431.5 ENSMUSG00000020431 ENSMUST00000135398 Adcy1 protein_coding Interval_65714 chr16 25865810 25866244 + 0 NA intron (ENSMUSG00000022510.14, intron 7 of 13) protein_coding-intron (ENSMUSG00000022510.14, intron 5 of 11) -90448 ENSMUSG00000090257.1 ENSMUSG00000090257 ENSMUST00000161614 Gm4524 antisense Interval_132186 chr5 143182855 143183309 + 0 NA intron (ENSMUSG00000029586.9, intron 1 of 7) protein_coding-intron (ENSMUSG00000029586.9, intron 1 of 7) -2350 ENSMUSG00000061898.10 ENSMUSG00000061898 ENSMUST00000199880 Rbak protein_coding Interval_3320 chr1 56892682 56892975 + 0 NA intron (ENSMUSG00000038331.15, intron 5 of 10) protein_coding-intron (ENSMUSG00000038331.15, intron 4 of 9) 77044 ENSMUSG00000038331.15 ENSMUSG00000038331 ENSMUST00000177282 Satb2 protein_coding Interval_114883 chr4 86690725 86690972 + 0 NA Intergenic Intergenic -32165 ENSMUSG00000028494.12 ENSMUSG00000028494 ENSMUST00000134094 Plin2 protein_coding Interval_169932 chr9 103054004 103055596 + 0 NA intron (ENSMUSG00000032548.14, intron 3 of 13) protein_coding-intron (ENSMUSG00000032548.14, intron 3 of 13) 30726 ENSMUSG00000110765.1 ENSMUSG00000110765 ENSMUST00000216778 Gm47468 antisense Interval_47628 chr13 90328176 90328545 + 0 NA Intergenic Intergenic 58197 ENSMUSG00000102793.1 ENSMUSG00000102793 ENSMUST00000192337 Gm37708 TEC Interval_9206 chr1 155059471 155060278 + 0 NA Intergenic Intergenic -2695 ENSMUSG00000101880.1 ENSMUSG00000101880 ENSMUST00000190720 Gm29282 lincRNA Interval_30705 chr11 96015296 96016037 + 0 NA Intergenic Intergenic -8511 ENSMUSG00000103376.1 ENSMUSG00000103376 ENSMUST00000194862 Gm37179 TEC Interval_12029 chr1 188973538 188974386 + 0 NA promoter-TSS (ENSMUSG00000026608.13) protein_coding-promoter-TSS (ENSMUSG00000026608.13) 33879 ENSMUSG00000026608.13 ENSMUSG00000026608 ENSMUST00000193273 Kctd3 protein_coding Interval_97859 chr2 144487652 144488140 + 0 NA intron (ENSMUSG00000037259.15, intron 13 of 20) protein_coding-intron (ENSMUSG00000037259.15, intron 13 of 20) 23501 ENSMUSG00000083674.3 ENSMUSG00000083674 ENSMUST00000137929 Zfp133-ps transcribed_unitary_pseudogene Interval_100838 chr2 172824742 172826037 + 0 NA Intergenic Intergenic 38952 ENSMUSG00000093160.1 ENSMUSG00000093160 ENSMUST00000175419 Gm22773 miRNA Interval_134653 chr6 30161343 30162735 + 0 NA Intergenic Intergenic 3953 ENSMUSG00000076361.1 ENSMUSG00000076361 ENSMUST00000102406 Mir182 miRNA Interval_59695 chr15 58666042 58666307 + 0 NA Intergenic Intergenic 100560 ENSMUSG00000084485.1 ENSMUSG00000084485 ENSMUST00000122536 Gm23789 misc_RNA Interval_44205 chr13 42088780 42089048 + 0 NA intron (ENSMUSG00000021366.8, intron 2 of 3) protein_coding-intron (ENSMUSG00000021366.8, intron 2 of 8) 39580 ENSMUSG00000100071.1 ENSMUSG00000100071 ENSMUST00000186134 Gm28707 lincRNA Interval_46013 chr13 60105526 60105882 + 0 NA intron (ENSMUSG00000114531.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000114531.1, intron 1 of 2) -3411 ENSMUSG00000114531.1 ENSMUSG00000114531 ENSMUST00000225586 A530065N20Rik lincRNA Interval_42891 chr13 21169465 21170597 + 0 NA Intergenic Intergenic -10193 ENSMUSG00000021326.13 ENSMUSG00000021326 ENSMUST00000124794 Trim27 protein_coding Interval_25618 chr11 50230762 50231834 + 0 NA promoter-TSS (ENSMUSG00000098474.1) miRNA-promoter-TSS (ENSMUSG00000098474.1) 558 ENSMUSG00000036620.14 ENSMUSG00000036620 ENSMUST00000122977 Mgat4b protein_coding Interval_47006 chr13 74259481 74260698 + 0 NA intron (ENSMUSG00000021575.16, intron 2 of 9) protein_coding-intron (ENSMUSG00000021575.16, intron 3 of 10) 5376 ENSMUSG00000021575.16 ENSMUSG00000021575 ENSMUST00000222032 Ahrr protein_coding Interval_57259 chr15 8184047 8185259 + 0 NA intron (ENSMUSG00000039801.7, intron 10 of 52) protein_coding-intron (ENSMUSG00000039801.7, intron 10 of 52) 33570 ENSMUSG00000022142.8 ENSMUSG00000022142 ENSMUST00000230647 Nup155 protein_coding Interval_112136 chr4 34894931 34895915 + 0 NA exon (ENSMUSG00000028298.10, exon 2 of 5) protein_coding-exon (ENSMUSG00000028298.10, exon 2 of 5) 1635 ENSMUSG00000028298.10 ENSMUSG00000028298 ENSMUST00000108130 Cga protein_coding Interval_15877 chr10 58673388 58673925 + 0 NA intron (ENSMUSG00000003227.4, intron 1 of 11) protein_coding-intron (ENSMUSG00000003227.4, intron 1 of 11) 1998 ENSMUSG00000003227.4 ENSMUSG00000003227 ENSMUST00000003312 Edar protein_coding Interval_76341 chr17 79227133 79227861 + 0 NA Intergenic Intergenic 30552 ENSMUSG00000117047.1 ENSMUSG00000117047 ENSMUST00000232946 Gm5230 processed_pseudogene Interval_85001 chr19 21167089 21167396 + 0 NA intron (ENSMUSG00000118086.1, intron 4 of 5) lincRNA-intron (ENSMUSG00000118086.1, intron 4 of 5) 3599 ENSMUSG00000118086.1 ENSMUSG00000118086 ENSMUST00000235897 AC106834.1 lincRNA Interval_45225 chr13 53278442 53279987 + 0 NA intron (ENSMUSG00000021464.14, intron 1 of 8) protein_coding-intron (ENSMUSG00000021464.14, intron 1 of 8) -3556 ENSMUSG00000021464.14 ENSMUSG00000021464 ENSMUST00000149299 Ror2 protein_coding Interval_14418 chr10 33370466 33370836 + 0 NA intron (ENSMUSG00000019787.9, intron 21 of 37) protein_coding-intron (ENSMUSG00000019787.9, intron 21 of 37) -41425 ENSMUSG00000112521.1 ENSMUSG00000112521 ENSMUST00000218403 Gm29884 processed_pseudogene Interval_103496 chr3 45104481 45104858 + 0 NA Intergenic Intergenic -56026 ENSMUSG00000099285.1 ENSMUSG00000099285 ENSMUST00000184721 Gm27989 miRNA Interval_120115 chr4 141931337 141932043 + 0 NA intron (ENSMUSG00000051435.11, intron 5 of 6) protein_coding-intron (ENSMUSG00000051435.11, intron 1 of 7) -9264 ENSMUSG00000051435.11 ENSMUSG00000051435 ENSMUST00000125293 Fhad1 protein_coding Interval_37543 chr12 69724036 69725497 + 0 NA promoter-TSS (ENSMUSG00000054894.6) protein_coding-promoter-TSS (ENSMUSG00000054894.6) 7 ENSMUSG00000020988.9 ENSMUSG00000020988 ENSMUST00000223387 L2hgdh protein_coding Interval_154031 chr8 12054081 12054685 + 0 NA Intergenic Intergenic 106044 ENSMUSG00000109995.1 ENSMUSG00000109995 ENSMUST00000209977 B020031H02Rik lincRNA Interval_122334 chr5 21432020 21432235 + 0 NA intron (ENSMUSG00000047221.5, intron 2 of 2) protein_coding-intron (ENSMUSG00000047221.5, intron 2 of 7) 7126 ENSMUSG00000047221.5 ENSMUSG00000047221 ENSMUST00000146056 Fam185a protein_coding Interval_156444 chr8 48235481 48236725 + 0 NA exon (ENSMUSG00000031561.16, exon 27 of 29) protein_coding-exon (ENSMUSG00000031561.16, exon 27 of 29) 34882 ENSMUSG00000110480.1 ENSMUSG00000110480 ENSMUST00000212653 Gm32842 processed_pseudogene Interval_63408 chr15 100891969 100892954 + 0 NA intron (ENSMUSG00000023033.14, intron 1 of 1) protein_coding-intron (ENSMUSG00000023033.14, intron 1 of 26) -60070 ENSMUSG00000115912.1 ENSMUSG00000115912 ENSMUST00000230694 Gm35569 lincRNA Interval_154659 chr8 22410677 22412048 + 0 NA promoter-TSS (ENSMUSG00000031533.4) protein_coding-promoter-TSS (ENSMUSG00000031533.4) -36 ENSMUSG00000031533.4 ENSMUSG00000031533 ENSMUST00000211083 Mrps31 protein_coding Interval_115315 chr4 95981862 95982913 + 0 NA intron (ENSMUSG00000028572.13, intron 1 of 18) protein_coding-intron (ENSMUSG00000028572.13, intron 2 of 21) -15352 ENSMUSG00000044125.6 ENSMUSG00000044125 ENSMUST00000143332 9530080O11Rik processed_transcript Interval_140952 chr6 123000278 123000508 + 0 NA intron (ENSMUSG00000059639.2, intron 2 of 5) protein_coding-intron (ENSMUSG00000059639.2, intron 2 of 5) 10026 ENSMUSG00000059639.2 ENSMUSG00000059639 ENSMUST00000079379 Clec4a4 protein_coding Interval_88184 chr19 60437439 60438293 + 0 NA Intergenic Intergenic 30438 ENSMUSG00000045052.3 ENSMUSG00000045052 ENSMUST00000051277 Prlhr protein_coding Interval_90627 chr2 31550456 31552610 + 0 NA TTS (ENSMUSG00000084226.1) processed_pseudogene-TTS (ENSMUSG00000084226.1) 1162 ENSMUSG00000084226.1 ENSMUSG00000084226 ENSMUST00000117887 Gm13426 processed_pseudogene Interval_129696 chr5 121828310 121829570 + 0 NA promoter-TSS (ENSMUSG00000042594.16) protein_coding-promoter-TSS (ENSMUSG00000042594.16) -199 ENSMUSG00000042594.16 ENSMUSG00000042594 ENSMUST00000137682 Sh2b3 protein_coding Interval_85428 chr19 25779017 25779979 + 0 NA Intergenic Intergenic 17309 ENSMUSG00000098105.1 ENSMUSG00000098105 ENSMUST00000182565 Gm8825 processed_pseudogene Interval_43903 chr13 37966831 37967551 + 0 NA exon (ENSMUSG00000021427.10, exon 10 of 10) protein_coding-exon (ENSMUSG00000021427.10, exon 10 of 10) 20175 ENSMUSG00000039087.17 ENSMUSG00000039087 ENSMUST00000162849 Rreb1 protein_coding Interval_45343 chr13 54580945 54581618 + 0 NA TTS (ENSMUSG00000025870.10) protein_coding-TTS (ENSMUSG00000025870.10) 3168 ENSMUSG00000080454.3 ENSMUSG00000080454 ENSMUST00000116804 Gm24195 miRNA Interval_9782 chr1 162179424 162179642 + 0 NA intron (ENSMUSG00000040265.16, intron 3 of 8) protein_coding-intron (ENSMUSG00000040265.16, intron 14 of 19) -38281 ENSMUSG00000070126.1 ENSMUSG00000070126 ENSMUST00000093618 Mir199a-2 miRNA Interval_41070 chr12 110965702 110966440 + 0 NA intron (ENSMUSG00000021275.16, intron 17 of 19) protein_coding-intron (ENSMUSG00000021275.16, intron 17 of 19) 12184 ENSMUSG00000037904.14 ENSMUSG00000037904 ENSMUST00000144882 Ankrd9 protein_coding Interval_123758 chr5 35268769 35269442 + 0 NA Intergenic Intergenic -9214 ENSMUSG00000045318.6 ENSMUSG00000045318 ENSMUST00000049545 Adra2c protein_coding Interval_122480 chr5 23364911 23366007 + 0 NA Intergenic Intergenic -11037 ENSMUSG00000105091.1 ENSMUSG00000105091 ENSMUST00000196054 Gm43722 processed_pseudogene Interval_75461 chr17 66720731 66721726 + 0 NA TTS (ENSMUSG00000114563.1) antisense-TTS (ENSMUSG00000114563.1) 6774 ENSMUSG00000114563.1 ENSMUSG00000114563 ENSMUST00000224424 1700016K05Rik antisense Interval_143669 chr7 14170592 14171078 + 0 NA TTS (ENSMUSG00000080705.1) unprocessed_pseudogene-TTS (ENSMUSG00000080705.1) 16246 ENSMUSG00000100378.1 ENSMUSG00000100378 ENSMUST00000190928 Rpap3-ps1 processed_pseudogene Interval_69061 chr16 90380065 90380271 + 0 NA Intergenic Intergenic -17051 ENSMUSG00000116849.1 ENSMUSG00000116849 ENSMUST00000231427 Gm49710 lincRNA Interval_97033 chr2 130667213 130668072 + 0 NA promoter-TSS (ENSMUSG00000074797.11) protein_coding-promoter-TSS (ENSMUSG00000074797.11) -163 ENSMUSG00000074797.11 ENSMUSG00000074797 ENSMUST00000126714 Itpa protein_coding Interval_75343 chr17 66021343 66021634 + 0 NA intron (ENSMUSG00000034647.15, intron 8 of 8) protein_coding-intron (ENSMUSG00000034647.15, intron 8 of 12) 15783 ENSMUSG00000117074.1 ENSMUSG00000117074 ENSMUST00000233477 Gm49925 processed_pseudogene Interval_130114 chr5 124365935 124367229 + 0 NA Intergenic Intergenic -3500 ENSMUSG00000029394.11 ENSMUSG00000029394 ENSMUST00000196910 Cdk2ap1 protein_coding Interval_172531 chrX 35851653 35851905 + 0 NA Intergenic Intergenic 13652 ENSMUSG00000087847.1 ENSMUSG00000087847 ENSMUST00000157222 Gm25624 scaRNA Interval_3567 chr1 59629243 59629457 + 0 NA promoter-TSS (ENSMUSG00000047361.16) protein_coding-promoter-TSS (ENSMUSG00000047361.16) 2770 ENSMUSG00000089276.1 ENSMUSG00000089276 ENSMUST00000158651 Gm24545 misc_RNA Interval_133045 chr5 149495567 149496021 + 0 NA intron (ENSMUSG00000107132.1, intron 2 of 4) antisense-intron (ENSMUSG00000107132.1, intron 2 of 4) 7258 ENSMUSG00000106879.1 ENSMUSG00000106879 ENSMUST00000201267 Gm2566 processed_pseudogene Interval_92167 chr2 55190489 55190699 + 0 NA Intergenic Intergenic -101471 ENSMUSG00000082301.1 ENSMUSG00000082301 ENSMUST00000117686 Gm14032 processed_pseudogene Interval_58598 chr15 36474708 36475393 + 0 NA Intergenic Intergenic 21665 ENSMUSG00000048307.8 ENSMUSG00000048307 ENSMUST00000228941 Ankrd46 protein_coding Interval_50244 chr14 11160730 11162360 + 0 NA promoter-TSS (ENSMUSG00000089785.2) transcribed_processed_pseudogene-promoter-TSS (ENSMUSG00000089785.2) -645 ENSMUSG00000089785.2 ENSMUSG00000089785 ENSMUST00000162199 Slc25a5-ps transcribed_processed_pseudogene Interval_64256 chr16 9866283 9867122 + 0 NA intron (ENSMUSG00000059003.12, intron 3 of 13) protein_coding-intron (ENSMUSG00000059003.12, intron 1 of 11) 128221 ENSMUSG00000059003.12 ENSMUSG00000059003 ENSMUST00000197242 Grin2a protein_coding Interval_2718 chr1 43827011 43828333 + 0 NA promoter-TSS (ENSMUSG00000057363.12) protein_coding-promoter-TSS (ENSMUSG00000057363.12) 78 ENSMUSG00000057363.12 ENSMUSG00000057363 ENSMUST00000128261 Uxs1 protein_coding Interval_6195 chr1 100909436 100910020 + 0 NA Intergenic Intergenic 47935 ENSMUSG00000077039.1 ENSMUSG00000077039 ENSMUST00000103851 Gm25537 miRNA Interval_42480 chr13 14012769 14012970 + 0 NA intron (ENSMUSG00000039233.12, intron 5 of 16) protein_coding-intron (ENSMUSG00000039233.12, intron 5 of 16) -3366 ENSMUSG00000039233.12 ENSMUSG00000039233 ENSMUST00000160776 Tbce protein_coding Interval_75515 chr17 67696829 67698904 + 0 NA intron (ENSMUSG00000032796.8, intron 1 of 15) protein_coding-intron (ENSMUSG00000032796.8, intron 1 of 62) 601 ENSMUSG00000032796.8 ENSMUSG00000032796 ENSMUST00000233224 Lama1 protein_coding Interval_133798 chr6 12315242 12315723 + 0 NA exon (ENSMUSG00000032625.14, exon 28 of 28) protein_coding-exon (ENSMUSG00000032625.14, exon 28 of 28) 186856 ENSMUSG00000108209.1 ENSMUSG00000108209 ENSMUST00000203296 Gm32222 processed_pseudogene Interval_61829 chr15 84467324 84468512 + 0 NA Intergenic Intergenic -20821 ENSMUSG00000062760.11 ENSMUSG00000062760 ENSMUST00000186527 Shisal1 protein_coding Interval_99606 chr2 163502375 163503468 + 0 NA TTS (ENSMUSG00000078949.2) protein_coding-TTS (ENSMUSG00000078949.2) -3887 ENSMUSG00000017950.16 ENSMUSG00000017950 ENSMUST00000137449 Hnf4a protein_coding Interval_92506 chr2 60196834 60197600 + 0 NA intron (ENSMUSG00000026987.16, intron 1 of 3) protein_coding-intron (ENSMUSG00000026987.16, intron 1 of 3) -12696 ENSMUSG00000026977.17 ENSMUSG00000026977 ENSMUST00000136367 Marchf7 protein_coding Interval_73728 chr17 43025929 43026197 + 0 NA intron (ENSMUSG00000023915.5, intron 1 of 1) protein_coding-intron (ENSMUSG00000023915.5, intron 1 of 5) 9495 ENSMUSG00000023915.5 ENSMUSG00000023915 ENSMUST00000233482 Tnfrsf21 protein_coding Interval_43378 chr13 29901488 29902187 + 0 NA Intergenic Intergenic -38446 ENSMUSG00000086893.1 ENSMUSG00000086893 ENSMUST00000144277 Gm11365 antisense Interval_67884 chr16 58670266 58671001 + 0 NA exon (ENSMUSG00000022742.6, exon 1 of 7) protein_coding-exon (ENSMUSG00000022742.6, exon 1 of 7) -7206 ENSMUSG00000022742.6 ENSMUSG00000022742 ENSMUST00000231342 Cpox protein_coding Interval_64363 chr16 10846268 10846921 + 0 NA intron (ENSMUSG00000037991.9, intron 1 of 5) protein_coding-intron (ENSMUSG00000037991.9, intron 1 of 5) 11526 ENSMUSG00000037991.9 ENSMUSG00000037991 ENSMUST00000181721 Rmi2 protein_coding Interval_68235 chr16 70216793 70217077 + 0 NA Intergenic Intergenic 26973 ENSMUSG00000116794.1 ENSMUSG00000116794 ENSMUST00000231873 Gm49656 processed_pseudogene Interval_119474 chr4 137815083 137815899 + 0 NA Intergenic Intergenic -33300 ENSMUSG00000028766.10 ENSMUSG00000028766 ENSMUST00000143757 Alpl protein_coding Interval_110568 chr4 3967032 3968147 + 0 NA Intergenic Intergenic 6006 ENSMUSG00000068240.5 ENSMUSG00000068240 ENSMUST00000089430 Gm11808 protein_coding Interval_37740 chr12 71532614 71533720 + 0 NA intron (ENSMUSG00000113630.1, intron 3 of 5) lincRNA-intron (ENSMUSG00000113630.1, intron 3 of 5) -44798 ENSMUSG00000114028.1 ENSMUSG00000114028 ENSMUST00000222033 9630002D21Rik lincRNA Interval_47376 chr13 82355140 82355346 + 0 NA Intergenic Intergenic 24400 ENSMUSG00000114932.1 ENSMUSG00000114932 ENSMUST00000224376 Gm4936 processed_pseudogene Interval_55102 chr14 78119361 78120760 + 0 NA Intergenic Intergenic -31079 ENSMUSG00000045655.9 ENSMUSG00000045655 ENSMUST00000173826 Fam216b protein_coding Interval_12718 chr10 4482143 4483048 + 0 NA promoter-TSS (ENSMUSG00000019767.12) protein_coding-promoter-TSS (ENSMUSG00000019767.12) -1639 ENSMUSG00000065371.1 ENSMUSG00000065371 ENSMUST00000083437 Gm22739 snRNA Interval_4575 chr1 75204306 75204844 + 0 NA intron (ENSMUSG00000026200.13, intron 5 of 6) protein_coding-intron (ENSMUSG00000026200.13, intron 5 of 16) -1685 ENSMUSG00000026200.13 ENSMUSG00000026200 ENSMUST00000131408 Glb1l protein_coding Interval_73476 chr17 37805793 37806042 + 0 NA exon (ENSMUSG00000044985.6, exon 1 of 1) protein_coding-exon (ENSMUSG00000044985.6, exon 1 of 1) 4738 ENSMUSG00000044985.6 ENSMUSG00000044985 ENSMUST00000053599 Olfr124 protein_coding Interval_32769 chr11 110436935 110437180 + 0 NA intron (ENSMUSG00000020623.11, intron 1 of 11) protein_coding-intron (ENSMUSG00000020623.11, intron 1 of 11) -40320 ENSMUSG00000020623.11 ENSMUSG00000020623 ENSMUST00000133920 Map2k6 protein_coding Interval_101917 chr3 11328091 11328704 + 0 NA Intergenic Intergenic 174060 ENSMUSG00000095289.1 ENSMUSG00000095289 ENSMUST00000175281 Gm22547 miRNA Interval_103546 chr3 48566535 48566812 + 0 NA Intergenic Intergenic 42429 ENSMUSG00000037910.2 ENSMUSG00000037910 ENSMUST00000036023 1700018B24Rik lincRNA Interval_123063 chr5 29348061 29349129 + 0 NA intron (ENSMUSG00000010721.15, intron 2 of 14) protein_coding-intron (ENSMUSG00000010721.15, intron 3 of 16) -11749 ENSMUSG00000093302.1 ENSMUSG00000093302 ENSMUST00000175561 Gm23801 miRNA Interval_163153 chr9 15880155 15880965 + 0 NA Intergenic Intergenic -6004 ENSMUSG00000050901.6 ENSMUSG00000050901 ENSMUST00000057920 Mtnr1b protein_coding Interval_34867 chr12 12821135 12821902 + 0 NA Intergenic Intergenic 33533 ENSMUSG00000091430.1 ENSMUSG00000091430 ENSMUST00000171380 Platr19 lincRNA Interval_161660 chr8 121861409 121862039 + 0 NA intron (ENSMUSG00000092329.1, intron 1 of 15) protein_coding-intron (ENSMUSG00000092329.1, intron 1 of 15) -4121 ENSMUSG00000098109.1 ENSMUSG00000098109 ENSMUST00000182121 9530085P06Rik TEC Interval_98493 chr2 152767784 152768165 + 0 NA Intergenic Intergenic 4915 ENSMUSG00000093306.1 ENSMUSG00000093306 ENSMUST00000175565 Gm23802 miRNA Interval_60319 chr15 72850324 72851115 + 0 NA intron (ENSMUSG00000047921.17, intron 17 of 17) protein_coding-intron (ENSMUSG00000047921.17, intron 16 of 21) -40395 ENSMUSG00000106847.1 ENSMUSG00000106847 ENSMUST00000202826 Peg13 sense_intronic Interval_132287 chr5 143948505 143949017 + 0 NA intron (ENSMUSG00000075569.10, intron 7 of 20) protein_coding-intron (ENSMUSG00000075569.10, intron 7 of 20) -10931 ENSMUSG00000075569.10 ENSMUSG00000075569 ENSMUST00000164604 Rsph10b protein_coding Interval_27962 chr11 71597396 71598480 + 0 NA Intergenic Intergenic -24400 ENSMUSG00000111450.1 ENSMUSG00000111450 ENSMUST00000215428 Gm33351 lincRNA Interval_76660 chr17 83254634 83254845 + 0 NA Intergenic Intergenic -15232 ENSMUSG00000088410.1 ENSMUSG00000088410 ENSMUST00000157785 Gm24240 snoRNA Interval_64205 chr16 9132579 9133437 + 0 NA intron (ENSMUSG00000116469.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000116469.1, intron 1 of 2) -25238 ENSMUSG00000116348.1 ENSMUSG00000116348 ENSMUST00000231156 Gm18722 processed_pseudogene Interval_14845 chr10 40440980 40443940 + 0 NA intron (ENSMUSG00000038481.13, intron 4 of 11) protein_coding-intron (ENSMUSG00000038481.13, intron 4 of 12) -92357 ENSMUSG00000038491.9 ENSMUSG00000038491 ENSMUST00000044774 Cdk19os antisense Interval_124794 chr5 54127085 54127299 + 0 NA Intergenic Intergenic 11335 ENSMUSG00000039156.19 ENSMUSG00000039156 ENSMUST00000202342 Stim2 protein_coding Interval_45862 chr13 58604470 58604988 + 0 NA intron (ENSMUSG00000021553.14, intron 1 of 3) protein_coding-intron (ENSMUSG00000021553.14, intron 1 of 17) 6148 ENSMUSG00000021553.14 ENSMUSG00000021553 ENSMUST00000151675 Slc28a3 protein_coding Interval_28313 chr11 75141725 75143277 + 0 NA intron (ENSMUSG00000038290.15, intron 12 of 16) protein_coding-intron (ENSMUSG00000038290.15, intron 14 of 18) -17132 ENSMUSG00000038290.15 ENSMUSG00000038290 ENSMUST00000153226 Smg6 protein_coding Interval_14448 chr10 33926657 33928169 + 0 NA exon (ENSMUSG00000039531.8, exon 10 of 10) protein_coding-exon (ENSMUSG00000039531.8, exon 10 of 10) 5927 ENSMUSG00000039531.8 ENSMUSG00000039531 ENSMUST00000218892 Zup1 protein_coding Interval_106236 chr3 94832105 94832346 + 0 NA promoter-TSS (ENSMUSG00000084058.1) processed_pseudogene-promoter-TSS (ENSMUSG00000084058.1) -752 ENSMUSG00000084058.1 ENSMUSG00000084058 ENSMUST00000121556 Gm15263 processed_pseudogene Interval_172944 chrX 57087766 57087964 + 0 NA promoter-TSS (ENSMUSG00000031131.11) protein_coding-promoter-TSS (ENSMUSG00000031131.11) -11721 ENSMUSG00000031131.11 ENSMUSG00000031131 ENSMUST00000141936 Vgll1 protein_coding Interval_118199 chr4 129494771 129495006 + 0 NA intron (ENSMUSG00000086336.1, intron 1 of 2) antisense-intron (ENSMUSG00000086336.1, intron 1 of 2) 3648 ENSMUSG00000078554.2 ENSMUSG00000078554 ENSMUST00000135698 Fam229a protein_coding Interval_98351 chr2 151701229 151703128 + 0 NA promoter-TSS (ENSMUSG00000044364.5) protein_coding-promoter-TSS (ENSMUSG00000044364.5) -133 ENSMUSG00000044364.5 ENSMUSG00000044364 ENSMUST00000109872 Tmem74b protein_coding Interval_5625 chr1 90334935 90336007 + 0 NA Intergenic Intergenic 8159 ENSMUSG00000098368.1 ENSMUSG00000098368 ENSMUST00000184315 Gm27648 rRNA Interval_163978 chr9 30187412 30187667 + 0 NA Intergenic Intergenic 19964 ENSMUSG00000111304.1 ENSMUSG00000111304 ENSMUST00000217527 Gm47677 lincRNA Interval_173718 chrX 102686383 102686774 + 0 NA intron (ENSMUSG00000081443.2, intron 2 of 2) protein_coding-intron (ENSMUSG00000081443.2, intron 2 of 2) 394 ENSMUSG00000081443.2 ENSMUSG00000081443 ENSMUST00000122154 Gm3880 protein_coding Interval_32282 chr11 106674540 106674771 + 0 NA intron (ENSMUSG00000020717.19, intron 12 of 14) protein_coding-intron (ENSMUSG00000020717.19, intron 14 of 15) -11329 ENSMUSG00000020717.19 ENSMUSG00000020717 ENSMUST00000124958 Pecam1 protein_coding Interval_98310 chr2 150924715 150925764 + 0 NA intron (ENSMUSG00000027454.10, intron 4 of 4) protein_coding-intron (ENSMUSG00000027454.10, intron 4 of 6) -8294 ENSMUSG00000082341.1 ENSMUSG00000082341 ENSMUST00000121686 Gm14143 processed_pseudogene Interval_121829 chr5 8578305 8579037 + 0 NA intron (ENSMUSG00000040570.14, intron 3 of 10) protein_coding-intron (ENSMUSG00000040570.14, intron 3 of 9) 44281 ENSMUSG00000040570.14 ENSMUSG00000040570 ENSMUST00000115378 Rundc3b protein_coding Interval_87478 chr19 52795188 52795386 + 0 NA Intergenic Intergenic -127955 ENSMUSG00000117896.1 ENSMUSG00000117896 ENSMUST00000237126 AA387883 lincRNA Interval_141667 chr6 132941137 132941694 + 0 NA Intergenic Intergenic 7448 ENSMUSG00000108261.1 ENSMUSG00000108261 ENSMUST00000203065 Tas2r146-ps1 unprocessed_pseudogene Interval_162495 chr9 3341838 3342439 + 0 NA intron (ENSMUSG00000025899.14, intron 2 of 7) protein_coding-intron (ENSMUSG00000025899.14, intron 2 of 11) -10519 ENSMUSG00000064956.1 ENSMUSG00000064956 ENSMUST00000083022 Gm24918 snoRNA Interval_95689 chr2 114177776 114178671 + 0 NA intron (ENSMUSG00000040383.16, intron 1 of 3) protein_coding-intron (ENSMUSG00000040383.16, intron 1 of 3) 8801 ENSMUSG00000040383.16 ENSMUSG00000040383 ENSMUST00000154317 Aqr protein_coding Interval_114274 chr4 70398002 70398771 + 0 NA TTS (ENSMUSG00000039298.16) protein_coding-TTS (ENSMUSG00000039298.16) 12057 ENSMUSG00000039298.16 ENSMUSG00000039298 ENSMUST00000126416 Cdk5rap2 protein_coding Interval_137018 chr6 66466535 66467020 + 0 NA Intergenic Intergenic -1078 ENSMUSG00000107479.1 ENSMUSG00000107479 ENSMUST00000203449 2610300M13Rik lincRNA Interval_153669 chr8 4404554 4405602 + 0 NA Intergenic Intergenic -2233 ENSMUSG00000109356.1 ENSMUSG00000109356 ENSMUST00000208928 Gm45118 unprocessed_pseudogene Interval_127886 chr5 108628658 108630321 + 0 NA promoter-TSS (ENSMUSG00000013495.15) protein_coding-promoter-TSS (ENSMUSG00000013495.15) -12191 ENSMUSG00000013495.15 ENSMUSG00000013495 ENSMUST00000198346 Tmem175 protein_coding Interval_132365 chr5 144497017 144497529 + 0 NA Intergenic Intergenic -48629 ENSMUSG00000059991.7 ENSMUSG00000059991 ENSMUST00000071782 Nptx2 protein_coding Interval_42382 chr13 12487320 12487551 + 0 NA intron (ENSMUSG00000095105.2, intron 4 of 5) protein_coding-intron (ENSMUSG00000095105.2, intron 4 of 5) -30912 ENSMUSG00000057554.13 ENSMUSG00000057554 ENSMUST00000152478 Lgals8 protein_coding Interval_119537 chr4 138241206 138241973 + 0 NA TTS (ENSMUSG00000028759.13) protein_coding-TTS (ENSMUSG00000028759.13) -15146 ENSMUSG00000045349.15 ENSMUSG00000045349 ENSMUST00000154421 Sh2d5 protein_coding Interval_163096 chr9 15255591 15256180 + 0 NA intron (ENSMUSG00000031937.7, intron 1 of 3) protein_coding-intron (ENSMUSG00000031937.7, intron 1 of 3) 16840 ENSMUSG00000031937.7 ENSMUSG00000031937 ENSMUST00000034413 Vstm5 protein_coding Interval_134895 chr6 33293161 33294133 + 0 NA intron (ENSMUSG00000029763.17, intron 3 of 5) protein_coding-intron (ENSMUSG00000029763.17, intron 3 of 17) -39770 ENSMUSG00000029763.17 ENSMUSG00000029763 ENSMUST00000134653 Exoc4 protein_coding Interval_82065 chr18 67464309 67465476 + 0 NA promoter-TSS (ENSMUSG00000024530.8) protein_coding-promoter-TSS (ENSMUSG00000024530.8) 1 ENSMUSG00000024530.8 ENSMUSG00000024530 ENSMUST00000235414 Prelid3a protein_coding Interval_35446 chr12 21866855 21867151 + 0 NA Intergenic Intergenic -90296 ENSMUSG00000091105.1 ENSMUSG00000091105 ENSMUST00000164169 Mrto4-ps2 processed_pseudogene Interval_47393 chr13 83186755 83187178 + 0 NA intron (ENSMUSG00000114372.1, intron 3 of 3) lincRNA-intron (ENSMUSG00000114372.1, intron 3 of 3) 2743 ENSMUSG00000114735.1 ENSMUSG00000114735 ENSMUST00000224835 Gm48156 processed_pseudogene Interval_129344 chr5 119347941 119348510 + 0 NA Intergenic Intergenic 50980 ENSMUSG00000084548.1 ENSMUSG00000084548 ENSMUST00000122599 n-R5s175 rRNA Interval_150225 chr7 108472618 108473033 + 0 NA Intergenic Intergenic 4582 ENSMUSG00000109213.2 ENSMUSG00000109213 ENSMUST00000208811 Olfr499-ps1 unprocessed_pseudogene Interval_69895 chr16 97982046 97982349 + 0 NA Intergenic Intergenic 14771 ENSMUSG00000097874.3 ENSMUSG00000097874 ENSMUST00000183627 C030010L15Rik antisense Interval_169302 chr9 96258212 96259672 + 0 NA promoter-TSS (ENSMUSG00000032411.15) protein_coding-promoter-TSS (ENSMUSG00000032411.15) 11159 ENSMUSG00000100382.1 ENSMUSG00000100382 ENSMUST00000190012 Gm28924 processed_pseudogene Interval_50749 chr14 19040655 19042887 + 0 NA Intergenic Intergenic -1413 ENSMUSG00000114318.1 ENSMUSG00000114318 ENSMUST00000225809 Gm48781 processed_pseudogene Interval_68641 chr16 82797052 82797306 + 0 NA Intergenic Intergenic -31203 ENSMUSG00000094030.1 ENSMUSG00000094030 ENSMUST00000177665 Gm21833 protein_coding Interval_132460 chr5 145083310 145084433 + 0 NA promoter-TSS (ENSMUSG00000029621.14) protein_coding-promoter-TSS (ENSMUSG00000029621.14) 159 ENSMUSG00000038770.17 ENSMUSG00000038770 ENSMUST00000151196 Kpna7 protein_coding Interval_118057 chr4 128670991 128671520 + 0 NA intron (ENSMUSG00000028796.17, intron 1 of 6) protein_coding-intron (ENSMUSG00000028796.17, intron 1 of 14) 33784 ENSMUSG00000084891.1 ENSMUSG00000084891 ENSMUST00000141242 Gm12958 lincRNA Interval_85594 chr19 28957087 28957472 + 0 NA intron (ENSMUSG00000064202.15, intron 3 of 12) protein_coding-intron (ENSMUSG00000064202.15, intron 3 of 12) -6674 ENSMUSG00000040105.3 ENSMUSG00000040105 ENSMUST00000045674 Plpp6 protein_coding Interval_15894 chr10 59034081 59034488 + 0 NA intron (ENSMUSG00000037990.18, intron 3 of 9) protein_coding-intron (ENSMUSG00000037990.18, intron 3 of 3) 68741 ENSMUSG00000098653.1 ENSMUSG00000098653 ENSMUST00000183751 Gm27672 miRNA Interval_111773 chr4 28351983 28352255 + 0 NA Intergenic Intergenic -1664 ENSMUSG00000082703.1 ENSMUSG00000082703 ENSMUST00000118918 Gm11907 processed_pseudogene Interval_132645 chr5 146923487 146924283 + 0 NA Intergenic Intergenic -24772 ENSMUSG00000016503.18 ENSMUSG00000016503 ENSMUST00000133296 Gtf3a protein_coding Interval_44398 chr13 44622887 44623099 + 0 NA intron (ENSMUSG00000113730.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000113730.1, intron 1 of 1) 811 ENSMUSG00000113730.1 ENSMUSG00000113730 ENSMUST00000221956 Gm47805 lincRNA Interval_152479 chr7 133288181 133288419 + 0 NA Intergenic Intergenic 44901 ENSMUSG00000109619.1 ENSMUSG00000109619 ENSMUST00000209700 Gm45672 lincRNA Interval_43607 chr13 34062433 34062960 + 0 NA TTS (ENSMUSG00000038286.11) protein_coding-TTS (ENSMUSG00000038286.11) 2170 ENSMUSG00000038286.11 ENSMUSG00000038286 ENSMUST00000223251 Bphl protein_coding Interval_138860 chr6 92733705 92734195 + 0 NA Intergenic Intergenic -93682 ENSMUSG00000048636.7 ENSMUSG00000048636 ENSMUST00000133858 A730049H05Rik protein_coding Interval_17387 chr10 76264102 76265379 + 0 NA TTS (ENSMUSG00000020231.15) protein_coding-TTS (ENSMUSG00000020231.15) 10887 ENSMUSG00000033208.7 ENSMUSG00000033208 ENSMUST00000036387 S100b protein_coding Interval_52743 chr14 49278035 49279131 + 0 NA Intergenic Intergenic 20690 ENSMUSG00000021852.14 ENSMUSG00000021852 ENSMUST00000146164 Slc35f4 protein_coding Interval_88915 chr2 12846596 12847334 + 0 NA Intergenic Intergenic -130974 ENSMUSG00000026730.12 ENSMUSG00000026730 ENSMUST00000195521 Pter protein_coding Interval_2629 chr1 42624005 42624243 + 0 NA intron (ENSMUSG00000060424.14, intron 2 of 3) lincRNA-intron (ENSMUSG00000060424.14, intron 2 of 3) -27602 ENSMUSG00000104199.1 ENSMUSG00000104199 ENSMUST00000191831 4930420N18Rik TEC Interval_54594 chr14 70940377 70940641 + 0 NA intron (ENSMUSG00000022103.10, intron 2 of 6) protein_coding-intron (ENSMUSG00000022103.10, intron 4 of 8) 49981 ENSMUSG00000022103.10 ENSMUSG00000022103 ENSMUST00000227633 Gfra2 protein_coding Interval_102897 chr3 32629813 32631269 + 0 NA Intergenic Intergenic -14062 ENSMUSG00000027669.14 ENSMUSG00000027669 ENSMUST00000143588 Gnb4 protein_coding Interval_156611 chr8 54565074 54565738 + 0 NA intron (ENSMUSG00000031519.4, intron 1 of 6) protein_coding-intron (ENSMUSG00000031519.4, intron 1 of 6) -6005 ENSMUSG00000031519.4 ENSMUSG00000031519 ENSMUST00000239152 Asb5 protein_coding Interval_151245 chr7 120127154 120128011 + 0 NA intron (ENSMUSG00000030911.7, intron 17 of 17) protein_coding-intron (ENSMUSG00000030911.7, intron 17 of 17) 17707 ENSMUSG00000030911.7 ENSMUSG00000030911 ENSMUST00000207333 Zp2 protein_coding Interval_16208 chr10 61428199 61429055 + 0 NA exon (ENSMUSG00000020091.15, exon 3 of 3) protein_coding-exon (ENSMUSG00000020091.15, exon 3 of 3) 10655 ENSMUSG00000037171.6 ENSMUSG00000037171 ENSMUST00000049339 Nodal protein_coding Interval_80824 chr18 47608559 47609799 + 0 NA intron (ENSMUSG00000118259.1, intron 1 of 5) lincRNA-intron (ENSMUSG00000118259.1, intron 1 of 5) 71444 ENSMUSG00000118259.1 ENSMUSG00000118259 ENSMUST00000236621 Gm5095 lincRNA Interval_21917 chr11 5183514 5185841 + 0 NA Intergenic Intergenic -32437 ENSMUSG00000034164.17 ENSMUSG00000034164 ENSMUST00000138551 Emid1 protein_coding Interval_64884 chr16 16982835 16984234 + 0 NA promoter-TSS (ENSMUSG00000063358.17) protein_coding-promoter-TSS (ENSMUSG00000063358.17) 14925 ENSMUSG00000116598.1 ENSMUSG00000116598 ENSMUST00000232160 Gm6438 processed_pseudogene Interval_107918 chr3 116780370 116780571 + 0 NA exon (ENSMUSG00000033400.14, exon 4 of 4) protein_coding-exon (ENSMUSG00000033400.14, exon 4 of 4) 26947 ENSMUSG00000033400.14 ENSMUSG00000033400 ENSMUST00000159670 Agl protein_coding Interval_112784 chr4 44980973 44981954 + 0 NA promoter-TSS (ENSMUSG00000035637.14) protein_coding-promoter-TSS (ENSMUSG00000035637.14) 2 ENSMUSG00000035637.14 ENSMUSG00000035637 ENSMUST00000143589 Grhpr protein_coding Interval_172424 chrX 18931832 18932124 + 0 NA Intergenic Intergenic -10634 ENSMUSG00000081654.1 ENSMUSG00000081654 ENSMUST00000121177 Gm5383 processed_pseudogene Interval_74694 chr17 55999717 56001414 + 0 NA exon (ENSMUSG00000038781.7, exon 6 of 13) protein_coding-exon (ENSMUSG00000038781.7, exon 6 of 13) 4987 ENSMUSG00000038781.7 ENSMUSG00000038781 ENSMUST00000233977 Stap2 protein_coding Interval_62775 chr15 96787877 96788495 + 0 NA Intergenic Intergenic -21108 ENSMUSG00000095638.2 ENSMUSG00000095638 ENSMUST00000177677 Gm8888 processed_pseudogene Interval_63964 chr16 4879253 4881670 + 0 NA promoter-TSS (ENSMUSG00000039568.6) protein_coding-promoter-TSS (ENSMUSG00000039568.6) -656 ENSMUSG00000039568.6 ENSMUSG00000039568 ENSMUST00000143873 Ubald1 protein_coding Interval_34387 chr12 3791486 3792549 + 0 NA Intergenic Intergenic -15143 ENSMUSG00000020661.15 ENSMUSG00000020661 ENSMUST00000172913 Dnmt3a protein_coding Interval_25228 chr11 45678558 45679692 + 0 NA Intergenic Intergenic 39742 ENSMUSG00000077320.1 ENSMUSG00000077320 ENSMUST00000104132 Gm22284 snoRNA Interval_30749 chr11 96260359 96261820 + 0 NA promoter-TSS (ENSMUSG00000078706.4) lincRNA-promoter-TSS (ENSMUSG00000078706.4) -4075 ENSMUSG00000065546.1 ENSMUSG00000065546 ENSMUST00000083612 Mir196a-1 miRNA Interval_60004 chr15 63674610 63674855 + 0 NA intron (ENSMUSG00000115520.2, intron 2 of 8) lincRNA-intron (ENSMUSG00000115520.2, intron 2 of 8) 43035 ENSMUSG00000095812.1 ENSMUSG00000095812 ENSMUST00000179326 Gm5473 processed_pseudogene Interval_102869 chr3 32413203 32413720 + 0 NA intron (ENSMUSG00000027665.13, intron 1 of 20) protein_coding-intron (ENSMUSG00000027665.13, intron 1 of 20) -40472 ENSMUSG00000102825.1 ENSMUSG00000102825 ENSMUST00000191961 Gm36990 TEC Interval_153967 chr8 11549640 11550979 + 0 NA promoter-TSS (ENSMUSG00000056228.10) protein_coding-promoter-TSS (ENSMUSG00000056228.10) 432 ENSMUSG00000056228.10 ENSMUSG00000056228 ENSMUST00000211734 Cars2 protein_coding Interval_171726 chr9 120531729 120533726 + 0 NA Intergenic Intergenic 10914 ENSMUSG00000111816.1 ENSMUSG00000111816 ENSMUST00000214719 Gm7229 unprocessed_pseudogene Interval_55061 chr14 77582325 77582589 + 0 NA exon (ENSMUSG00000022012.9, exon 10 of 19) protein_coding-exon (ENSMUSG00000022012.9, exon 10 of 19) 9601 ENSMUSG00000022012.9 ENSMUSG00000022012 ENSMUST00000228845 Enox1 protein_coding Interval_10107 chr1 165850154 165850326 + 0 NA intron (ENSMUSG00000005763.15, intron 1 of 8) protein_coding-intron (ENSMUSG00000005763.15, intron 1 of 7) -1196 ENSMUSG00000102154.1 ENSMUSG00000102154 ENSMUST00000193728 Gm37469 antisense Interval_148565 chr7 82714984 82715957 + 0 NA promoter-TSS (ENSMUSG00000108984.1) TEC-promoter-TSS (ENSMUSG00000108984.1) -122 ENSMUSG00000108984.1 ENSMUSG00000108984 ENSMUST00000208664 Gm44916 TEC Interval_63355 chr15 100513264 100514336 + 0 NA intron (ENSMUSG00000009733.9, intron 11 of 15) protein_coding-intron (ENSMUSG00000009733.9, intron 11 of 15) -1556 ENSMUSG00000009733.9 ENSMUSG00000009733 ENSMUST00000231138 Tfcp2 protein_coding Interval_86926 chr19 44924735 44925036 + 0 NA Intergenic Intergenic -17967 ENSMUSG00000036097.8 ENSMUSG00000036097 ENSMUST00000237505 Slf2 protein_coding Interval_38790 chr12 82355197 82355638 + 0 NA intron (ENSMUSG00000042700.16, intron 3 of 21) protein_coding-intron (ENSMUSG00000042700.16, intron 2 of 20) 141120 ENSMUSG00000094374.2 ENSMUSG00000094374 ENSMUST00000179295 Gm5435 processed_pseudogene Interval_53256 chr14 55617596 55618977 + 0 NA exon (ENSMUSG00000002324.8, exon 1 of 20) protein_coding-exon (ENSMUSG00000002324.8, exon 1 of 20) -5212 ENSMUSG00000002324.8 ENSMUSG00000002324 ENSMUST00000155193 Rec8 protein_coding Interval_70339 chr17 8637046 8637358 + 0 NA intron (ENSMUSG00000023868.17, intron 1 of 3) protein_coding-intron (ENSMUSG00000023868.17, intron 1 of 21) -68342 ENSMUSG00000084390.1 ENSMUSG00000084390 ENSMUST00000119013 Gm15425 processed_pseudogene Interval_150461 chr7 110843645 110844676 + 0 NA promoter-TSS (ENSMUSG00000030788.16) protein_coding-promoter-TSS (ENSMUSG00000030788.16) 232 ENSMUSG00000030788.16 ENSMUSG00000030788 ENSMUST00000210070 Rnf141 protein_coding Interval_47246 chr13 79453398 79453939 + 0 NA Intergenic Intergenic -1302 ENSMUSG00000096005.1 ENSMUSG00000096005 ENSMUST00000179499 Gm24863 snRNA Interval_141512 chr6 128805257 128805706 + 0 NA intron (ENSMUSG00000107872.2, intron 3 of 5) protein_coding-intron (ENSMUSG00000107872.2, intron 3 of 5) -16266 ENSMUSG00000030325.16 ENSMUSG00000030325 ENSMUST00000174865 Klrb1c protein_coding Interval_75857 chr17 71913093 71913588 + 0 NA intron (ENSMUSG00000055471.7, intron 12 of 28) protein_coding-intron (ENSMUSG00000055471.7, intron 12 of 28) 13690 ENSMUSG00000117126.1 ENSMUSG00000117126 ENSMUST00000233690 Gm49924 TEC Interval_76407 chr17 79987028 79987313 + 0 NA Intergenic Intergenic -5508 ENSMUSG00000117415.1 ENSMUSG00000117415 ENSMUST00000234800 Gm41625 lincRNA Interval_73098 chr17 34795497 34796349 + 0 NA intron (ENSMUSG00000092200.2, intron 5 of 18) unprocessed_pseudogene-intron (ENSMUSG00000092200.2, intron 5 of 18) 7479 ENSMUSG00000024365.9 ENSMUSG00000024365 ENSMUST00000173394 Cyp21a1 protein_coding Interval_6709 chr1 118910915 118911683 + 0 NA intron (ENSMUSG00000048402.14, intron 2 of 6) protein_coding-intron (ENSMUSG00000048402.14, intron 2 of 13) -42921 ENSMUSG00000098273.1 ENSMUSG00000098273 ENSMUST00000183982 Mir6346 miRNA Interval_130947 chr5 134201138 134201811 + 0 NA intron (ENSMUSG00000015942.9, intron 7 of 18) protein_coding-intron (ENSMUSG00000015942.9, intron 7 of 15) -2995 ENSMUSG00000084729.1 ENSMUSG00000084729 ENSMUST00000122780 Gm24139 misc_RNA Interval_127994 chr5 110142223 110142486 + 0 NA intron (ENSMUSG00000014668.15, intron 2 of 2) protein_coding-intron (ENSMUSG00000014668.15, intron 3 of 17) 6512 ENSMUSG00000014668.15 ENSMUSG00000014668 ENSMUST00000197005 Chfr protein_coding Interval_115169 chr4 92985017 92986821 + 0 NA Intergenic Intergenic -15183 ENSMUSG00000081987.1 ENSMUSG00000081987 ENSMUST00000121400 Gm12639 processed_pseudogene Interval_17672 chr10 78940234 78941058 + 0 NA Intergenic Intergenic -9990 ENSMUSG00000094080.3 ENSMUSG00000094080 ENSMUST00000081571 Olfr8 protein_coding Interval_127511 chr5 104735553 104736534 + 0 NA Intergenic Intergenic -39736 ENSMUSG00000048334.8 ENSMUSG00000048334 ENSMUST00000055593 Gm8258 processed_pseudogene Interval_48588 chr13 100535431 100536228 + 0 NA intron (ENSMUSG00000021638.12, intron 1 of 6) protein_coding-intron (ENSMUSG00000021638.12, intron 3 of 8) 16652 ENSMUSG00000021638.12 ENSMUSG00000021638 ENSMUST00000159515 Ocln protein_coding Interval_76602 chr17 82309878 82310598 + 0 NA Intergenic Intergenic -45155 ENSMUSG00000117643.1 ENSMUSG00000117643 ENSMUST00000234825 Gm9390 processed_pseudogene Interval_79824 chr18 35371920 35372199 + 0 NA intron (ENSMUSG00000024357.10, intron 2 of 2) protein_coding-intron (ENSMUSG00000024357.10, intron 3 of 9) 108030 ENSMUSG00000117876.1 ENSMUSG00000117876 ENSMUST00000236119 Gm50146 antisense Interval_31590 chr11 101551594 101553148 + 0 NA promoter-TSS (ENSMUSG00000017146.12) protein_coding-promoter-TSS (ENSMUSG00000017146.12) -7148 ENSMUSG00000017119.19 ENSMUSG00000017119 ENSMUST00000141170 Nbr1 protein_coding Interval_156704 chr8 57480408 57481772 + 0 NA Intergenic Intergenic 6770 ENSMUSG00000031609.3 ENSMUSG00000031609 ENSMUST00000034022 Sap30 protein_coding Interval_104297 chr3 63037253 63037704 + 0 NA Intergenic Intergenic -113245 ENSMUSG00000063001.10 ENSMUSG00000063001 ENSMUST00000077976 Gm9701 processed_pseudogene Interval_30092 chr11 89130592 89131079 + 0 NA Intergenic Intergenic -4129 ENSMUSG00000086919.1 ENSMUSG00000086919 ENSMUST00000138295 Gm11497 lincRNA Interval_120055 chr4 141564383 141566517 + 0 NA Intergenic Intergenic 19261 ENSMUSG00000048406.5 ENSMUSG00000048406 ENSMUST00000049927 B330016D10Rik pseudogene Interval_26739 chr11 60114356 60115899 + 0 NA exon (ENSMUSG00000051008.5, exon 1 of 2) lincRNA-exon (ENSMUSG00000051008.5, exon 1 of 2) 103 ENSMUSG00000051008.5 ENSMUSG00000051008 ENSMUST00000130746 4930412M03Rik lincRNA Interval_48269 chr13 97562314 97562825 + 0 NA intron (ENSMUSG00000110235.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000110235.1, intron 1 of 2) 2543 ENSMUSG00000110235.1 ENSMUSG00000110235 ENSMUST00000210897 Gm5086 lincRNA Interval_88852 chr2 11663437 11664709 + 0 NA intron (ENSMUSG00000026770.5, intron 1 of 7) protein_coding-intron (ENSMUSG00000026770.5, intron 1 of 7) -15635 ENSMUSG00000026770.5 ENSMUSG00000026770 ENSMUST00000195427 Il2ra protein_coding Interval_24534 chr11 34122994 34123459 + 0 NA Intergenic Intergenic -18601 ENSMUSG00000086243.1 ENSMUSG00000086243 ENSMUST00000131630 Gm12121 lincRNA Interval_50021 chr13 119754538 119757098 + 0 NA promoter-TSS (ENSMUSG00000095930.1) protein_coding-promoter-TSS (ENSMUSG00000095930.1) -275 ENSMUSG00000114369.1 ENSMUSG00000114369 ENSMUST00000224796 Gm41077 antisense Interval_150939 chr7 116513846 116514441 + 0 NA intron (ENSMUSG00000030659.14, intron 2 of 12) protein_coding-intron (ENSMUSG00000030659.14, intron 2 of 13) -14669 ENSMUSG00000030659.14 ENSMUSG00000030659 ENSMUST00000183335 Nucb2 protein_coding Interval_168398 chr9 80025885 80027102 + 0 NA Intergenic Intergenic -10936 ENSMUSG00000088908.1 ENSMUSG00000088908 ENSMUST00000158283 Gm25433 misc_RNA Interval_119477 chr4 137835458 137836976 + 0 NA Intergenic Intergenic 47720 ENSMUSG00000085823.7 ENSMUSG00000085823 ENSMUST00000156022 Gm13012 antisense Interval_174102 chrX 134756469 134757488 + 0 NA promoter-TSS (ENSMUSG00000099272.1) miRNA-promoter-TSS (ENSMUSG00000099272.1) 331 ENSMUSG00000049047.11 ENSMUSG00000049047 ENSMUST00000086884 Armcx3 protein_coding Interval_12043 chr1 189055117 189057582 + 0 NA Intergenic Intergenic -8546 ENSMUSG00000103370.1 ENSMUSG00000103370 ENSMUST00000194962 Gm37178 TEC Interval_109546 chr3 144348386 144348664 + 0 NA Intergenic Intergenic 28311 ENSMUSG00000106266.1 ENSMUSG00000106266 ENSMUST00000198471 Gm43447 lincRNA Interval_154541 chr8 19221123 19221348 + 0 NA Intergenic Intergenic -4243 ENSMUSG00000050756.3 ENSMUSG00000050756 ENSMUST00000063112 Defb6 protein_coding Interval_81230 chr18 56651580 56652734 + 0 NA Intergenic Intergenic -15621 ENSMUSG00000118275.1 ENSMUSG00000118275 ENSMUST00000235398 Gm50289 processed_pseudogene Interval_31408 chr11 100512293 100513194 + 0 NA intron (ENSMUSG00000020917.17, intron 10 of 26) protein_coding-intron (ENSMUSG00000020917.17, intron 11 of 27) 10855 ENSMUSG00000020917.17 ENSMUSG00000020917 ENSMUST00000107385 Acly protein_coding Interval_15381 chr10 45251663 45252674 + 0 NA intron (ENSMUSG00000019848.14, intron 2 of 2) protein_coding-intron (ENSMUSG00000019848.14, intron 2 of 2) 5081 ENSMUSG00000098418.1 ENSMUSG00000098418 ENSMUST00000157398 Gm27723 snRNA Interval_104951 chr3 79237643 79238246 + 0 NA intron (ENSMUSG00000062232.14, intron 1 of 29) protein_coding-intron (ENSMUSG00000062232.14, intron 1 of 29) 25025 ENSMUSG00000104585.1 ENSMUSG00000104585 ENSMUST00000200412 4921511C10Rik antisense Interval_95200 chr2 104730896 104733396 + 0 NA intron (ENSMUSG00000027173.7, intron 1 of 8) protein_coding-intron (ENSMUSG00000027173.7, intron 1 of 8) -8991 ENSMUSG00000027173.7 ENSMUSG00000027173 ENSMUST00000144133 Depdc7 protein_coding Interval_41446 chr12 114067080 114068155 + 0 NA Intergenic Intergenic 1664 ENSMUSG00000076661.2 ENSMUSG00000076661 ENSMUST00000195641 Ighv16-1 IG_V_gene Interval_87241 chr19 47149488 47150541 + 0 NA Intergenic Intergenic -5760 ENSMUSG00000079258.2 ENSMUSG00000079258 ENSMUST00000111813 Calhm1 protein_coding Interval_25871 chr11 52268328 52268726 + 0 NA intron (ENSMUSG00000000782.16, intron 3 of 10) protein_coding-intron (ENSMUSG00000000782.16, intron 2 of 9) 6350 ENSMUSG00000000782.16 ENSMUSG00000000782 ENSMUST00000238914 Tcf7 protein_coding Interval_78699 chr18 17880280 17880482 + 0 NA Intergenic Intergenic 51562 ENSMUSG00000117439.1 ENSMUSG00000117439 ENSMUST00000234539 Gm50083 processed_pseudogene Interval_134530 chr6 29370065 29370334 + 0 NA intron (ENSMUSG00000029767.16, intron 5 of 5) protein_coding-intron (ENSMUSG00000029767.16, intron 5 of 6) 13728 ENSMUSG00000029767.16 ENSMUSG00000029767 ENSMUST00000138523 Calu protein_coding Interval_12954 chr10 8718807 8719020 + 0 NA Intergenic Intergenic 5672 ENSMUSG00000111215.1 ENSMUSG00000111215 ENSMUST00000213934 Gm48654 lincRNA Interval_33935 chr11 119526019 119526969 + 0 NA Intergenic Intergenic 21259 ENSMUSG00000025582.4 ENSMUSG00000025582 ENSMUST00000026670 Nptx1 protein_coding Interval_76054 chr17 74608444 74608791 + 0 NA exon (ENSMUSG00000097546.1, exon 3 of 4) antisense-exon (ENSMUSG00000097546.1, exon 3 of 4) 8502 ENSMUSG00000097546.1 ENSMUSG00000097546 ENSMUST00000181387 Gm26749 antisense Interval_163960 chr9 29833319 29833527 + 0 NA intron (ENSMUSG00000059974.10, intron 1 of 2) protein_coding-intron (ENSMUSG00000059974.10, intron 1 of 7) 230296 ENSMUSG00000111175.1 ENSMUSG00000111175 ENSMUST00000214849 Gm19640 processed_pseudogene Interval_27511 chr11 68324557 68325304 + 0 NA intron (ENSMUSG00000020902.12, intron 3 of 7) protein_coding-intron (ENSMUSG00000020902.12, intron 2 of 6) -54051 ENSMUSG00000084993.1 ENSMUSG00000084993 ENSMUST00000151817 Gm12305 sense_intronic Interval_132064 chr5 142562623 142563610 + 0 NA exon (ENSMUSG00000039533.8, exon 7 of 7) protein_coding-exon (ENSMUSG00000039533.8, exon 7 of 7) 6672 ENSMUSG00000105213.1 ENSMUSG00000105213 ENSMUST00000196808 Gm43037 unprocessed_pseudogene Interval_59054 chr15 42640698 42641069 + 0 NA intron (ENSMUSG00000022309.9, intron 1 of 1) protein_coding-intron (ENSMUSG00000022309.9, intron 1 of 8) -35442 ENSMUSG00000097805.2 ENSMUSG00000097805 ENSMUST00000228544 Gm17473 antisense Interval_91132 chr2 35342520 35342833 + 0 NA Intergenic Intergenic 2267 ENSMUSG00000075391.6 ENSMUSG00000075391 ENSMUST00000120770 Glo1-ps processed_pseudogene Interval_34539 chr12 4966877 4967127 + 0 NA intron (ENSMUSG00000052812.5, intron 14 of 30) protein_coding-intron (ENSMUSG00000052812.5, intron 14 of 30) -15050 ENSMUSG00000052812.5 ENSMUSG00000052812 ENSMUST00000220408 Atad2b protein_coding Interval_46351 chr13 64144534 64144818 + 0 NA intron (ENSMUSG00000044934.13, intron 2 of 4) protein_coding-intron (ENSMUSG00000044934.13, intron 2 of 4) 7809 ENSMUSG00000044934.13 ENSMUSG00000044934 ENSMUST00000117241 Zfp367 protein_coding Interval_26824 chr11 60869537 60870134 + 0 NA intron (ENSMUSG00000043284.12, intron 1 of 1) protein_coding-intron (ENSMUSG00000043284.12, intron 1 of 1) 9203 ENSMUSG00000043284.12 ENSMUSG00000043284 ENSMUST00000155031 Tmem11 protein_coding Interval_30443 chr11 94392327 94393175 + 0 NA intron (ENSMUSG00000020865.16, intron 1 of 30) protein_coding-intron (ENSMUSG00000020865.16, intron 1 of 30) 225 ENSMUSG00000020865.16 ENSMUSG00000020865 ENSMUST00000126566 Abcc3 protein_coding Interval_97062 chr2 130898917 130899904 + 0 NA intron (ENSMUSG00000085566.1, intron 1 of 1) processed_transcript-intron (ENSMUSG00000085566.1, intron 1 of 3) 6986 ENSMUSG00000085566.1 ENSMUSG00000085566 ENSMUST00000133766 A730017L22Rik processed_transcript Interval_95995 chr2 119034460 119035453 + 0 NA exon (ENSMUSG00000027324.1, exon 1 of 3) protein_coding-exon (ENSMUSG00000027324.1, exon 1 of 3) 166 ENSMUSG00000027324.1 ENSMUSG00000027324 ENSMUST00000028796 Rpusd2 protein_coding Interval_23899 chr11 28041796 28042220 + 0 NA Intergenic Intergenic -4027 ENSMUSG00000083201.1 ENSMUSG00000083201 ENSMUST00000119821 Gm12080 processed_pseudogene Interval_131068 chr5 134906696 134907652 + 0 NA promoter-TSS (ENSMUSG00000040576.8) protein_coding-promoter-TSS (ENSMUSG00000040576.8) -441 ENSMUSG00000040576.8 ENSMUSG00000040576 ENSMUST00000047305 Tmem270 protein_coding Interval_143314 chr7 5109073 5109716 + 0 NA TTS (ENSMUSG00000035191.15) protein_coding-TTS (ENSMUSG00000035191.15) 7556 ENSMUSG00000035191.15 ENSMUSG00000035191 ENSMUST00000208468 Rfpl4 protein_coding Interval_52020 chr14 34651394 34652358 + 0 NA Intergenic Intergenic -9831 ENSMUSG00000115575.1 ENSMUSG00000115575 ENSMUST00000227643 Gm49024 lincRNA Interval_26242 chr11 55389965 55390218 + 0 NA Intergenic Intergenic 30234 ENSMUSG00000018593.13 ENSMUSG00000018593 ENSMUST00000125787 Sparc protein_coding Interval_31843 chr11 103298513 103298832 + 0 NA Intergenic Intergenic -30927 ENSMUSG00000078635.3 ENSMUSG00000078635 ENSMUST00000139621 1700028N14Rik processed_transcript Interval_37253 chr12 63048185 63048448 + 0 NA Intergenic Intergenic 24828 ENSMUSG00000058933.5 ENSMUSG00000058933 ENSMUST00000080271 Gm5185 processed_pseudogene Interval_113312 chr4 53384534 53385889 + 0 NA Intergenic Intergenic 18819 ENSMUSG00000086267.1 ENSMUSG00000086267 ENSMUST00000154377 Gm12496 lincRNA Interval_5271 chr1 87162187 87162836 + 0 NA Intergenic Intergenic -13595 ENSMUSG00000026247.13 ENSMUSG00000026247 ENSMUST00000159662 Ecel1 protein_coding Interval_80479 chr18 42573872 42574598 + 0 NA promoter-TSS (ENSMUSG00000099024.1) misc_RNA-promoter-TSS (ENSMUSG00000099024.1) 26 ENSMUSG00000099024.1 ENSMUSG00000099024 ENSMUST00000184771 Gm27457 misc_RNA Interval_129316 chr5 119005963 119006516 + 0 NA Intergenic Intergenic -9243 ENSMUSG00000107371.1 ENSMUSG00000107371 ENSMUST00000202922 Gm43784 TEC Interval_91485 chr2 39221338 39222263 + 0 NA intron (ENSMUSG00000026753.5, intron 1 of 5) protein_coding-intron (ENSMUSG00000026753.5, intron 1 of 6) -4506 ENSMUSG00000083157.1 ENSMUSG00000083157 ENSMUST00000121167 Gm13511 processed_pseudogene Interval_166090 chr9 56541536 56542307 + 0 NA Intergenic Intergenic -1835 ENSMUSG00000111201.1 ENSMUSG00000111201 ENSMUST00000216151 Gm47178 processed_pseudogene Interval_62964 chr15 98256478 98257264 + 0 NA exon (ENSMUSG00000048077.6, exon 1 of 1) protein_coding-exon (ENSMUSG00000048077.6, exon 1 of 1) 422 ENSMUSG00000048077.6 ENSMUSG00000048077 ENSMUST00000060855 H1f7 protein_coding Interval_151817 chr7 126847330 126848875 + 0 NA promoter-TSS (ENSMUSG00000052301.14) protein_coding-promoter-TSS (ENSMUSG00000052301.14) 404 ENSMUSG00000052301.14 ENSMUSG00000052301 ENSMUST00000176771 Doc2a protein_coding Interval_36446 chr12 44728772 44728979 + 0 NA Intergenic Intergenic -106213 ENSMUSG00000112823.1 ENSMUSG00000112823 ENSMUST00000217983 Gm6125 processed_pseudogene Interval_19785 chr10 108793067 108793235 + 0 NA intron (ENSMUSG00000035864.14, intron 3 of 7) protein_coding-intron (ENSMUSG00000035864.14, intron 3 of 10) 14840 ENSMUSG00000111910.1 ENSMUSG00000111910 ENSMUST00000219164 Gm47472 TEC Interval_23091 chr11 19877106 19877815 + 0 NA Intergenic Intergenic -77110 ENSMUSG00000045671.17 ENSMUSG00000045671 ENSMUST00000123036 Spred2 protein_coding Interval_121336 chr4 155075090 155075571 + 0 NA intron (ENSMUSG00000029048.3, intron 7 of 7) protein_coding-intron (ENSMUSG00000029048.3, intron 6 of 6) 8271 ENSMUSG00000029047.13 ENSMUSG00000029047 ENSMUST00000134341 Pex10 protein_coding Interval_72339 chr17 29297630 29298150 + 0 NA promoter-TSS (ENSMUSG00000052712.17) protein_coding-promoter-TSS (ENSMUSG00000052712.17) -10248 ENSMUSG00000094326.1 ENSMUSG00000094326 ENSMUST00000178657 Gm10045 transcribed_processed_pseudogene Interval_60590 chr15 75534193 75534468 + 0 NA Intergenic Intergenic 17121 ENSMUSG00000116155.1 ENSMUSG00000116155 ENSMUST00000229260 Gm34646 unprocessed_pseudogene Interval_95079 chr2 103743907 103744384 + 0 NA promoter-TSS (ENSMUSG00000027185.15) protein_coding-promoter-TSS (ENSMUSG00000027185.15) 17050 ENSMUSG00000027185.15 ENSMUSG00000027185 ENSMUST00000148798 Nat10 protein_coding Interval_173764 chrX 103621897 103623789 + 0 NA promoter-TSS (ENSMUSG00000086370.9) lincRNA-promoter-TSS (ENSMUSG00000086370.9) -474 ENSMUSG00000086370.9 ENSMUSG00000086370 ENSMUST00000123841 Ftx lincRNA Interval_18731 chr10 89757720 89757908 + 0 NA intron (ENSMUSG00000019951.10, intron 2 of 6) protein_coding-intron (ENSMUSG00000019951.10, intron 1 of 20) 12576 ENSMUSG00000019951.10 ENSMUSG00000019951 ENSMUST00000219819 Uhrf1bp1l protein_coding Interval_49516 chr13 112623791 112624080 + 0 NA intron (ENSMUSG00000021758.14, intron 10 of 21) protein_coding-intron (ENSMUSG00000021758.14, intron 9 of 20) 28540 ENSMUSG00000021758.14 ENSMUSG00000021758 ENSMUST00000099166 Ddx4 protein_coding Interval_99729 chr2 164536762 164537024 + 0 NA Intergenic Intergenic -13637 ENSMUSG00000086179.1 ENSMUSG00000086179 ENSMUST00000151754 Gm14317 lincRNA Interval_65237 chr16 20750345 20750629 + 0 NA Intergenic Intergenic 5179 ENSMUSG00000065372.1 ENSMUSG00000065372 ENSMUST00000083438 Gm22741 snRNA Interval_122794 chr5 25544044 25545654 + 0 NA Intergenic Intergenic -12418 ENSMUSG00000105744.1 ENSMUSG00000105744 ENSMUST00000199695 Gm43141 processed_pseudogene Interval_167191 chr9 66067573 66067790 + 0 NA intron (ENSMUSG00000039452.6, intron 5 of 6) protein_coding-intron (ENSMUSG00000039452.6, intron 5 of 6) 2034 ENSMUSG00000039452.6 ENSMUSG00000039452 ENSMUST00000214332 Snx22 protein_coding Interval_155720 chr8 36457415 36458556 + 0 NA promoter-TSS (ENSMUSG00000039620.17) protein_coding-promoter-TSS (ENSMUSG00000039620.17) 7605 ENSMUSG00000109977.1 ENSMUSG00000109977 ENSMUST00000209790 Gm19140 processed_pseudogene Interval_84307 chr19 9978187 9979074 + 0 NA Intergenic Intergenic -4093 ENSMUSG00000024661.7 ENSMUSG00000024661 ENSMUST00000236403 Fth1 protein_coding Interval_172687 chrX 42159914 42160225 + 0 NA intron (ENSMUSG00000025862.14, intron 1 of 5) protein_coding-intron (ENSMUSG00000025862.14, intron 1 of 32) -9888 ENSMUSG00000104042.1 ENSMUSG00000104042 ENSMUST00000195000 Gm37564 TEC Interval_78747 chr18 20188067 20189008 + 0 NA Intergenic Intergenic -58803 ENSMUSG00000034774.6 ENSMUSG00000034774 ENSMUST00000054128 Dsg1c protein_coding Interval_31798 chr11 102944969 102947166 + 0 NA exon (ENSMUSG00000045532.5, exon 1 of 2) protein_coding-exon (ENSMUSG00000045532.5, exon 1 of 2) 621 ENSMUSG00000045532.5 ENSMUSG00000045532 ENSMUST00000057849 C1ql1 protein_coding Interval_147067 chr7 60537782 60538867 + 0 NA Intergenic Intergenic -105567 ENSMUSG00000109447.1 ENSMUSG00000109447 ENSMUST00000208725 Gm3198 processed_pseudogene Interval_92221 chr2 57102121 57104210 + 0 NA Intergenic Intergenic 20838 ENSMUSG00000026826.13 ENSMUSG00000026826 ENSMUST00000128776 Nr4a2 protein_coding Interval_142931 chr6 147061301 147061970 + 0 NA intron (ENSMUSG00000040112.9, intron 2 of 2) protein_coding-intron (ENSMUSG00000040112.9, intron 7 of 7) 18871 ENSMUSG00000040112.9 ENSMUSG00000040112 ENSMUST00000123139 Mrps35 protein_coding Interval_110949 chr4 10759502 10760393 + 0 NA intron (ENSMUSG00000086080.7, intron 3 of 5) lincRNA-intron (ENSMUSG00000086080.7, intron 2 of 2) 37864 ENSMUSG00000086080.7 ENSMUSG00000086080 ENSMUST00000141312 1700123O12Rik lincRNA Interval_105635 chr3 88263257 88264751 + 0 NA intron (ENSMUSG00000103766.5, intron 1 of 9) protein_coding-intron (ENSMUSG00000103766.5, intron 2 of 7) -9295 ENSMUSG00000104445.1 ENSMUSG00000104445 ENSMUST00000171887 Rhbg protein_coding Interval_110115 chr3 153399895 153400254 + 0 NA intron (ENSMUSG00000052544.9, intron 3 of 4) protein_coding-intron (ENSMUSG00000052544.9, intron 2 of 2) 74580 ENSMUSG00000104964.1 ENSMUSG00000104964 ENSMUST00000196286 4930597L12Rik TEC Interval_174047 chrX 132745297 132745821 + 0 NA Intergenic Intergenic 63672 ENSMUSG00000088026.1 ENSMUSG00000088026 ENSMUST00000157401 Gm22143 misc_RNA Interval_109775 chr3 146871945 146872176 + 0 NA intron (ENSMUSG00000036745.15, intron 1 of 20) protein_coding-intron (ENSMUSG00000036745.15, intron 1 of 21) -32713 ENSMUSG00000070343.3 ENSMUSG00000070343 ENSMUST00000084614 Gm10288 processed_pseudogene Interval_23430 chr11 22592425 22593177 + 0 NA Intergenic Intergenic -24607 ENSMUSG00000086256.1 ENSMUSG00000086256 ENSMUST00000142151 Gm12052 lincRNA Interval_83272 chr18 83325754 83326179 + 0 NA promoter-TSS (ENSMUSG00000118333.1) lincRNA-promoter-TSS (ENSMUSG00000118333.1) -82 ENSMUSG00000118333.1 ENSMUSG00000118333 ENSMUST00000236997 4921531P14Rik lincRNA Interval_113916 chr4 59839604 59840179 + 0 NA intron (ENSMUSG00000028385.14, intron 1 of 8) protein_coding-intron (ENSMUSG00000028385.14, intron 1 of 8) 6214 ENSMUSG00000080772.1 ENSMUSG00000080772 ENSMUST00000120410 Gm12543 transcribed_processed_pseudogene Interval_130723 chr5 129989885 129990193 + 0 NA exon (ENSMUSG00000025534.17, exon 11 of 12) protein_coding-exon (ENSMUSG00000025534.17, exon 11 of 12) 12789 ENSMUSG00000025534.17 ENSMUSG00000025534 ENSMUST00000122994 Gusb protein_coding Interval_129348 chr5 119370173 119370981 + 0 NA Intergenic Intergenic 73332 ENSMUSG00000084548.1 ENSMUSG00000084548 ENSMUST00000122599 n-R5s175 rRNA Interval_4478 chr1 74443160 74443740 + 0 NA intron (ENSMUSG00000033364.13, intron 23 of 25) protein_coding-intron (ENSMUSG00000033364.13, intron 21 of 23) 19764 ENSMUSG00000026175.12 ENSMUSG00000026175 ENSMUST00000163018 Vil1 protein_coding Interval_165551 chr9 49384728 49386400 + 0 NA intron (ENSMUSG00000032259.8, intron 1 of 7) protein_coding-intron (ENSMUSG00000032259.8, intron 1 of 7) 33872 ENSMUSG00000032257.6 ENSMUSG00000032257 ENSMUST00000216227 Ankk1 protein_coding Interval_152164 chr7 130298340 130298639 + 0 NA intron (ENSMUSG00000030849.18, intron 2 of 6) protein_coding-intron (ENSMUSG00000030849.18, intron 2 of 6) -32234 ENSMUSG00000030849.18 ENSMUSG00000030849 ENSMUST00000208844 Fgfr2 protein_coding Interval_30872 chr11 96996564 96997819 + 0 NA Intergenic Intergenic -19480 ENSMUSG00000018678.13 ENSMUSG00000018678 ENSMUST00000062652 Sp2 protein_coding Interval_120109 chr4 141891140 141891359 + 0 NA intron (ENSMUSG00000051435.11, intron 32 of 32) protein_coding-intron (ENSMUSG00000051435.11, intron 31 of 31) 5595 ENSMUSG00000085922.1 ENSMUSG00000085922 ENSMUST00000152351 Fhad1os2 antisense Interval_137605 chr6 75156631 75157019 + 0 NA Intergenic Intergenic 31343 ENSMUSG00000107467.1 ENSMUSG00000107467 ENSMUST00000204463 Gm8992 processed_pseudogene Interval_151887 chr7 127321411 127322264 + 0 NA intron (ENSMUSG00000030830.18, intron 18 of 30) protein_coding-intron (ENSMUSG00000030830.18, intron 18 of 30) 23752 ENSMUSG00000047371.7 ENSMUSG00000047371 ENSMUST00000205266 Zfp768 protein_coding Interval_167419 chr9 68912550 68913349 + 0 NA intron (ENSMUSG00000032238.17, intron 1 of 5) protein_coding-intron (ENSMUSG00000032238.17, intron 1 of 10) 259058 ENSMUSG00000032238.17 ENSMUSG00000032238 ENSMUST00000113624 Rora protein_coding Interval_162370 chr8 127499089 127499453 + 0 NA intron (ENSMUSG00000025812.18, intron 22 of 24) protein_coding-intron (ENSMUSG00000025812.18, intron 21 of 23) -62164 ENSMUSG00000090074.1 ENSMUSG00000090074 ENSMUST00000161478 Gm6921 processed_pseudogene Interval_120013 chr4 141367909 141368672 + 0 NA promoter-TSS (ENSMUSG00000006218.4) protein_coding-promoter-TSS (ENSMUSG00000006218.4) 70 ENSMUSG00000006218.4 ENSMUSG00000006218 ENSMUST00000006380 Fam131c protein_coding Interval_12768 chr10 5185496 5185705 + 0 NA promoter-TSS (ENSMUSG00000096054.3) protein_coding-promoter-TSS (ENSMUSG00000096054.3) -74 ENSMUSG00000096054.3 ENSMUSG00000096054 ENSMUST00000214945 Syne1 protein_coding Interval_63767 chr15 103304510 103305792 + 0 NA intron (ENSMUSG00000116308.1, intron 1 of 1) antisense-intron (ENSMUSG00000116308.1, intron 1 of 1) 4086 ENSMUSG00000116308.1 ENSMUSG00000116308 ENSMUST00000231068 Gm49482 antisense Interval_12081 chr1 189639586 189639820 + 0 NA TTS (ENSMUSG00000026605.14) protein_coding-TTS (ENSMUSG00000026605.14) 531 ENSMUSG00000103087.1 ENSMUSG00000103087 ENSMUST00000192679 Gm38122 TEC Interval_62976 chr15 98424450 98425005 + 0 NA Intergenic Intergenic -6498 ENSMUSG00000063780.7 ENSMUSG00000063780 ENSMUST00000075851 Olfr282 protein_coding Interval_69983 chr17 3833220 3833712 + 0 NA Intergenic Intergenic -137205 ENSMUSG00000023802.4 ENSMUSG00000023802 ENSMUST00000115800 Nox3 protein_coding Interval_16527 chr10 63370581 63371268 + 0 NA intron (ENSMUSG00000020063.16, intron 1 of 13) protein_coding-intron (ENSMUSG00000020063.16, intron 1 of 13) -15647 ENSMUSG00000036764.12 ENSMUSG00000036764 ENSMUST00000136832 Dnajc12 protein_coding Interval_149612 chr7 100039557 100039764 + 0 NA Intergenic Intergenic 33488 ENSMUSG00000030732.13 ENSMUSG00000030732 ENSMUST00000144808 Chrdl2 protein_coding Interval_7290 chr1 128472064 128473072 + 0 NA Intergenic Intergenic -17472 ENSMUSG00000088196.1 ENSMUSG00000088196 ENSMUST00000157571 Gm23902 snoRNA Interval_111132 chr4 12655144 12655605 + 0 NA exon (ENSMUSG00000104211.1, exon 1 of 1) TEC-exon (ENSMUSG00000104211.1, exon 1 of 1) 57986 ENSMUSG00000104211.1 ENSMUSG00000104211 ENSMUST00000194728 Gm37985 TEC Interval_45646 chr13 56513711 56515213 + 0 NA Intergenic Intergenic -8046 ENSMUSG00000035509.17 ENSMUSG00000035509 ENSMUST00000124981 Fbxl21 protein_coding Interval_55367 chr14 85501494 85501995 + 0 NA Intergenic Intergenic 22718 ENSMUSG00000115239.1 ENSMUSG00000115239 ENSMUST00000227214 Gm9264 processed_pseudogene Interval_34015 chr11 120035105 120035773 + 0 NA intron (ENSMUSG00000025375.15, intron 1 of 13) protein_coding-intron (ENSMUSG00000025375.15, intron 1 of 13) 11728 ENSMUSG00000025375.15 ENSMUSG00000025375 ENSMUST00000134319 Aatk protein_coding Interval_32259 chr11 106568340 106568726 + 0 NA exon (ENSMUSG00000040548.16, exon 2 of 2) protein_coding-exon (ENSMUSG00000040548.16, exon 2 of 2) -1423 ENSMUSG00000040548.16 ENSMUSG00000040548 ENSMUST00000153870 Tex2 protein_coding Interval_170141 chr9 105486844 105487364 + 0 NA intron (ENSMUSG00000032570.17, intron 1 of 6) protein_coding-intron (ENSMUSG00000032570.17, intron 2 of 27) 16584 ENSMUSG00000099373.1 ENSMUSG00000099373 ENSMUST00000188984 Gm19667 antisense Interval_100710 chr2 171873015 171873852 + 0 NA Intergenic Intergenic 88698 ENSMUSG00000086823.7 ENSMUSG00000086823 ENSMUST00000125465 1700028P15Rik processed_transcript Interval_138926 chr6 93588935 93590509 + 0 NA Intergenic Intergenic 60503 ENSMUSG00000107739.1 ENSMUSG00000107739 ENSMUST00000203479 Gm7812 processed_pseudogene Interval_55759 chr14 99696242 99696457 + 0 NA Intergenic Intergenic -65683 ENSMUSG00000115366.1 ENSMUSG00000115366 ENSMUST00000228944 Gm9298 processed_pseudogene Interval_157194 chr8 67473088 67473255 + 0 NA Intergenic Intergenic -7750 ENSMUSG00000025588.4 ENSMUSG00000025588 ENSMUST00000026677 Nat1 protein_coding Interval_134480 chr6 29032005 29033290 + 0 NA Intergenic Intergenic 10028 ENSMUSG00000065469.1 ENSMUSG00000065469 ENSMUST00000083535 Mir129-1 miRNA Interval_110653 chr4 5725435 5725716 + 0 NA intron (ENSMUSG00000049119.14, intron 1 of 2) protein_coding-intron (ENSMUSG00000049119.14, intron 1 of 2) -37773 ENSMUSG00000077392.1 ENSMUSG00000077392 ENSMUST00000104204 Gm24337 snoRNA Interval_126873 chr5 96352115 96352939 + 0 NA Intergenic Intergenic -21679 ENSMUSG00000034687.8 ENSMUSG00000034687 ENSMUST00000198016 Fras1 protein_coding Interval_151422 chr7 122251382 122252118 + 0 NA Intergenic Intergenic -1725 ENSMUSG00000108708.1 ENSMUSG00000108708 ENSMUST00000206804 Gm29977 processed_pseudogene Interval_76385 chr17 79798166 79798472 + 0 NA Intergenic Intergenic -13394 ENSMUSG00000117394.1 ENSMUSG00000117394 ENSMUST00000234236 1700106O07Rik lincRNA Interval_73491 chr17 37995449 37996533 + 0 NA Intergenic Intergenic -13656 ENSMUSG00000092390.1 ENSMUSG00000092390 ENSMUST00000173035 Gm20541 unprocessed_pseudogene Interval_111149 chr4 13206860 13207406 + 0 NA Intergenic Intergenic 59917 ENSMUSG00000080359.2 ENSMUSG00000080359 ENSMUST00000116709 Gm26250 miRNA Interval_108388 chr3 126512183 126512513 + 0 NA Intergenic Intergenic 64605 ENSMUSG00000105233.1 ENSMUSG00000105233 ENSMUST00000197129 Gm20568 processed_pseudogene Interval_142540 chr6 143161740 143162440 + 0 NA Intergenic Intergenic -5164 ENSMUSG00000030275.6 ENSMUSG00000030275 ENSMUST00000205256 Etnk1 protein_coding Interval_119050 chr4 135235937 135236498 + 0 NA intron (ENSMUSG00000037242.8, intron 2 of 2) protein_coding-intron (ENSMUSG00000037242.8, intron 2 of 5) 36597 ENSMUSG00000037242.8 ENSMUSG00000037242 ENSMUST00000143370 Clic4 protein_coding Interval_5326 chr1 87589404 87589998 + 0 NA intron (ENSMUSG00000079434.8, intron 1 of 2) protein_coding-intron (ENSMUSG00000079434.8, intron 2 of 3) 15674 ENSMUSG00000079434.8 ENSMUSG00000079434 ENSMUST00000070898 Neu2 protein_coding Interval_158375 chr8 83165000 83166421 + 0 NA promoter-TSS (ENSMUSG00000031709.15) protein_coding-promoter-TSS (ENSMUSG00000031709.15) 460 ENSMUSG00000074228.3 ENSMUSG00000074228 ENSMUST00000238241 Gm10645 TEC Interval_79627 chr18 34071429 34072321 + 0 NA Intergenic Intergenic -18841 ENSMUSG00000117961.1 ENSMUSG00000117961 ENSMUST00000235466 Gm50265 lincRNA Interval_62336 chr15 90401967 90402183 + 0 NA Intergenic Intergenic 48369 ENSMUSG00000116204.1 ENSMUSG00000116204 ENSMUST00000229899 Gm36480 lincRNA Interval_5844 chr1 92437135 92438180 + 0 NA Intergenic Intergenic -7125 ENSMUSG00000101522.1 ENSMUSG00000101522 ENSMUST00000190873 Gm7837 processed_pseudogene Interval_19853 chr10 110464896 110465361 + 0 NA Intergenic Intergenic -8924 ENSMUSG00000020181.18 ENSMUSG00000020181 ENSMUST00000160159 Nav3 protein_coding Interval_154745 chr8 23038172 23038379 + 0 NA intron (ENSMUSG00000031543.18, intron 1 of 41) protein_coding-intron (ENSMUSG00000031543.18, intron 1 of 42) 63821 ENSMUSG00000106605.1 ENSMUSG00000106605 ENSMUST00000197671 Gm44365 miRNA Interval_160452 chr8 109592998 109594041 + 0 NA TTS (ENSMUSG00000031730.18) protein_coding-TTS (ENSMUSG00000031730.18) -14509 ENSMUSG00000031722.10 ENSMUSG00000031722 ENSMUST00000212018 Hp protein_coding Interval_147633 chr7 70358318 70362315 + 0 NA promoter-TSS (ENSMUSG00000030551.14) protein_coding-promoter-TSS (ENSMUSG00000030551.14) -421 ENSMUSG00000030551.14 ENSMUSG00000030551 ENSMUST00000208681 Nr2f2 protein_coding Interval_95728 chr2 115346773 115346985 + 0 NA TTS (ENSMUSG00000086197.1) lincRNA-TTS (ENSMUSG00000086197.1) 2494 ENSMUSG00000086197.1 ENSMUSG00000086197 ENSMUST00000154367 Gm13976 lincRNA Interval_12230 chr1 190996564 190997235 + 0 NA Intergenic Intergenic 3899 ENSMUSG00000103723.1 ENSMUSG00000103723 ENSMUST00000195421 Gm37095 processed_pseudogene Interval_128039 chr5 110440965 110441274 + 0 NA intron (ENSMUSG00000043323.17, intron 1 of 2) protein_coding-intron (ENSMUSG00000043323.17, intron 1 of 18) -6870 ENSMUSG00000105482.1 ENSMUSG00000105482 ENSMUST00000196305 Gm42596 antisense Interval_154247 chr8 13772082 13772295 + 0 NA intron (ENSMUSG00000038416.15, intron 13 of 17) protein_coding-intron (ENSMUSG00000038416.15, intron 13 of 17) -6814 ENSMUSG00000038416.15 ENSMUSG00000038416 ENSMUST00000137360 Cdc16 protein_coding Interval_83498 chr18 87696572 87696783 + 0 NA Intergenic Intergenic -59609 ENSMUSG00000069324.6 ENSMUSG00000069324 ENSMUST00000091776 Gm5096 protein_coding Interval_110694 chr4 6514921 6515384 + 0 NA Intergenic Intergenic -6768 ENSMUSG00000081913.1 ENSMUSG00000081913 ENSMUST00000119966 Gm11803 processed_pseudogene Interval_169494 chr9 98442791 98443238 + 0 NA intron (ENSMUSG00000046402.10, intron 2 of 3) protein_coding-intron (ENSMUSG00000046402.10, intron 2 of 3) 20053 ENSMUSG00000046402.10 ENSMUSG00000046402 ENSMUST00000052068 Rbp1 protein_coding Interval_101443 chr2 181458088 181460694 + 0 NA promoter-TSS (ENSMUSG00000027583.13) protein_coding-promoter-TSS (ENSMUSG00000027583.13) -33354 ENSMUSG00000089612.1 ENSMUSG00000089612 ENSMUST00000158987 Gm22708 snRNA Interval_98116 chr2 148333018 148333279 + 0 NA Intergenic Intergenic -62196 ENSMUSG00000037014.4 ENSMUSG00000037014 ENSMUST00000109962 Sstr4 protein_coding Interval_80998 chr18 52527682 52529961 + 0 NA exon (ENSMUSG00000024529.14, exon 1 of 7) protein_coding-exon (ENSMUSG00000024529.14, exon 1 of 7) 160 ENSMUSG00000118365.1 ENSMUSG00000118365 ENSMUST00000235622 Gm41724 antisense Interval_226 KV575240.1 80737 81988 + 0 NA NA NA NA NA Interval_66180 chr16 32173563 32174779 + 0 NA Intergenic Intergenic -5652 ENSMUSG00000075269.5 ENSMUSG00000075269 ENSMUST00000099990 Bex6 protein_coding Interval_132705 chr5 147292889 147294681 + 0 NA Intergenic Intergenic -10487 ENSMUSG00000098687.1 ENSMUSG00000098687 ENSMUST00000184115 Mir7k miRNA Interval_119813 chr4 140153248 140153850 + 0 NA intron (ENSMUSG00000040972.8, intron 2 of 9) protein_coding-intron (ENSMUSG00000040972.8, intron 2 of 9) 10676 ENSMUSG00000086164.1 ENSMUSG00000086164 ENSMUST00000137283 Gm13029 antisense Interval_158460 chr8 83853287 83854148 + 0 NA Intergenic Intergenic -47018 ENSMUSG00000013033.16 ENSMUSG00000013033 ENSMUST00000131018 Adgrl1 protein_coding Interval_42880 chr13 20984761 20986762 + 0 NA intron (ENSMUSG00000021322.8, intron 13 of 20) protein_coding-intron (ENSMUSG00000021322.8, intron 13 of 20) 89186 ENSMUSG00000042869.2 ENSMUSG00000042869 ENSMUST00000058168 Olfr1370 protein_coding Interval_174111 chrX 135210221 135211025 + 0 NA promoter-TSS (ENSMUSG00000031409.1) protein_coding-promoter-TSS (ENSMUSG00000031409.1) 64 ENSMUSG00000031409.1 ENSMUSG00000031409 ENSMUST00000033783 Tceal6 protein_coding Interval_3391 chr1 57897063 57897352 + 0 NA intron (ENSMUSG00000038305.15, intron 7 of 9) protein_coding-intron (ENSMUSG00000038305.15, intron 5 of 11) 19904 ENSMUSG00000091283.1 ENSMUSG00000091283 ENSMUST00000172128 Gm17234 antisense Interval_53675 chr14 60796897 60797205 + 0 NA intron (ENSMUSG00000021993.10, intron 5 of 15) protein_coding-intron (ENSMUSG00000021993.10, intron 5 of 18) 12469 ENSMUSG00000021993.10 ENSMUSG00000021993 ENSMUST00000223709 Mipep protein_coding Interval_61477 chr15 81856122 81856700 + 0 NA exon (ENSMUSG00000048546.8, exon 1 of 1) protein_coding-exon (ENSMUSG00000048546.8, exon 1 of 1) -1330 ENSMUSG00000116075.1 ENSMUSG00000116075 ENSMUST00000230781 Gm49476 antisense Interval_165813 chr9 53376491 53377023 + 0 NA exon (ENSMUSG00000034584.3, exon 6 of 6) protein_coding-exon (ENSMUSG00000034584.3, exon 6 of 6) -13860 ENSMUSG00000034487.4 ENSMUSG00000034487 ENSMUST00000214164 Poglut3 protein_coding Interval_17534 chr10 77581167 77583154 + 0 NA promoter-TSS (ENSMUSG00000009291.13) protein_coding-promoter-TSS (ENSMUSG00000009291.13) 437 ENSMUSG00000009291.13 ENSMUSG00000009291 ENSMUST00000167006 Pttg1ip protein_coding Interval_49337 chr13 111318287 111318600 + 0 NA Intergenic Intergenic 43232 ENSMUSG00000081277.1 ENSMUSG00000081277 ENSMUST00000119271 Gm15285 processed_pseudogene Interval_22908 chr11 17278475 17279297 + 0 NA Intergenic Intergenic 19533 ENSMUSG00000082797.3 ENSMUSG00000082797 ENSMUST00000117065 Gm12015 processed_pseudogene Interval_96650 chr2 126787503 126788470 + 0 NA Intergenic Intergenic -4528 ENSMUSG00000027364.14 ENSMUSG00000027364 ENSMUST00000151140 Usp50 protein_coding Interval_137947 chr6 83626874 83627867 + 0 NA Intergenic Intergenic -25662 ENSMUSG00000108609.1 ENSMUSG00000108609 ENSMUST00000206919 Gm7424 processed_pseudogene Interval_142357 chr6 140853294 140854003 + 0 NA Intergenic Intergenic -68944 ENSMUSG00000108039.1 ENSMUSG00000108039 ENSMUST00000203498 Gm43925 processed_pseudogene Interval_167162 chr9 65720928 65721755 + 0 NA intron (ENSMUSG00000040524.9, intron 3 of 9) protein_coding-intron (ENSMUSG00000040524.9, intron 3 of 9) 51629 ENSMUSG00000040652.16 ENSMUSG00000040652 ENSMUST00000128664 Oaz2 protein_coding Interval_117392 chr4 123422816 123423252 + 0 NA intron (ENSMUSG00000028649.21, intron 53 of 93) protein_coding-intron (ENSMUSG00000028649.21, intron 52 of 92) -12583 ENSMUSG00000081528.1 ENSMUSG00000081528 ENSMUST00000121747 Gm12924 processed_pseudogene Interval_58420 chr15 34374973 34375489 + 0 NA intron (ENSMUSG00000022324.15, intron 4 of 13) protein_coding-intron (ENSMUSG00000022324.15, intron 4 of 18) -17359 ENSMUSG00000094447.2 ENSMUSG00000094447 ENSMUST00000179647 9430069I07Rik protein_coding Interval_12637 chr10 4060668 4062420 + 0 NA intron (ENSMUSG00000040675.17, intron 20 of 27) protein_coding-intron (ENSMUSG00000040675.17, intron 20 of 27) 29264 ENSMUSG00000040675.17 ENSMUSG00000040675 ENSMUST00000154517 Mthfd1l protein_coding Interval_62037 chr15 86032699 86035137 + 0 NA exon (ENSMUSG00000016028.11, exon 1 of 35) protein_coding-exon (ENSMUSG00000016028.11, exon 1 of 35) -40815 ENSMUSG00000035900.18 ENSMUSG00000035900 ENSMUST00000147286 Gramd4 protein_coding Interval_6120 chr1 97645706 97647291 + 0 NA intron (ENSMUSG00000044768.16, intron 1 of 1) protein_coding-intron (ENSMUSG00000044768.16, intron 2 of 2) -14333 ENSMUSG00000118489.1 ENSMUSG00000118489 ENSMUST00000238965 AC099860.1 processed_pseudogene Interval_124725 chr5 53568998 53569287 + 0 NA intron (ENSMUSG00000039191.12, intron 2 of 6) protein_coding-intron (ENSMUSG00000039191.12, intron 1 of 10) -21820 ENSMUSG00000107111.1 ENSMUSG00000107111 ENSMUST00000202154 Gm40304 antisense Interval_108576 chr3 129226889 129228022 + 0 NA Intergenic Intergenic -1927 ENSMUSG00000106078.1 ENSMUSG00000106078 ENSMUST00000199637 Gm43697 TEC Interval_87190 chr19 46740253 46742422 + 0 NA TTS (ENSMUSG00000003559.8) protein_coding-TTS (ENSMUSG00000003559.8) 33369 ENSMUSG00000003559.8 ENSMUSG00000003559 ENSMUST00000235266 As3mt protein_coding Interval_21161 chr10 126986481 126988639 + 0 NA intron (ENSMUSG00000078429.9, intron 1 of 7) protein_coding-intron (ENSMUSG00000078429.9, intron 1 of 7) -7970 ENSMUSG00000065430.1 ENSMUSG00000065430 ENSMUST00000083496 Mir26a-2 miRNA Interval_71980 chr17 27414815 27415845 + 0 NA Intergenic Intergenic 17183 ENSMUSG00000116970.1 ENSMUSG00000116970 ENSMUST00000232032 Gm49796 lincRNA Interval_55450 chr14 87444500 87444695 + 0 NA intron (ENSMUSG00000022019.16, intron 1 of 11) protein_coding-intron (ENSMUSG00000022019.16, intron 1 of 13) -2907 ENSMUSG00000115484.1 ENSMUSG00000115484 ENSMUST00000227005 Gm33121 processed_pseudogene Interval_169535 chr9 98962512 98962886 + 0 NA Intergenic Intergenic 7411 ENSMUSG00000050397.4 ENSMUSG00000050397 ENSMUST00000051312 Foxl2 protein_coding Interval_168214 chr9 77989703 77990519 + 0 NA Intergenic Intergenic -2488 ENSMUSG00000111610.1 ENSMUSG00000111610 ENSMUST00000216017 Gm34829 lincRNA Interval_24343 chr11 32567444 32568181 + 0 NA intron (ENSMUSG00000020272.8, intron 2 of 18) protein_coding-intron (ENSMUSG00000020272.8, intron 2 of 18) -20783 ENSMUSG00000020272.8 ENSMUSG00000020272 ENSMUST00000143397 Stk10 protein_coding Interval_45560 chr13 55868283 55868503 + 0 NA intron (ENSMUSG00000114493.2, intron 2 of 5) antisense-intron (ENSMUSG00000114493.2, intron 2 of 5) -32201 ENSMUSG00000021506.7 ENSMUSG00000021506 ENSMUST00000173618 Pitx1 protein_coding Interval_114933 chr4 87221751 87222193 + 0 NA intron (ENSMUSG00000037996.17, intron 2 of 2) protein_coding-intron (ENSMUSG00000037996.17, intron 1 of 9) 8495 ENSMUSG00000037996.17 ENSMUSG00000037996 ENSMUST00000155361 Slc24a2 protein_coding Interval_100189 chr2 167546968 167547810 + 0 NA Intergenic Intergenic -5925 ENSMUSG00000085596.1 ENSMUSG00000085596 ENSMUST00000127006 Gm11476 processed_transcript Interval_112602 chr4 43507949 43509507 + 0 NA promoter-TSS (ENSMUSG00000028463.14) protein_coding-promoter-TSS (ENSMUSG00000028463.14) -4 ENSMUSG00000087142.7 ENSMUSG00000087142 ENSMUST00000139119 Gm12454 antisense Interval_28761 chr11 78153862 78154109 + 0 NA exon (ENSMUSG00000037750.16, exon 3 of 3) protein_coding-exon (ENSMUSG00000037750.16, exon 3 of 3) -4547 ENSMUSG00000060727.4 ENSMUSG00000060727 ENSMUST00000118132 Gm12571 processed_pseudogene Interval_169305 chr9 96281491 96281749 + 0 NA intron (ENSMUSG00000032411.15, intron 2 of 6) protein_coding-intron (ENSMUSG00000032411.15, intron 2 of 6) -6737 ENSMUSG00000032411.15 ENSMUSG00000032411 ENSMUST00000191133 Tfdp2 protein_coding Interval_44097 chr13 40868553 40869662 + 0 NA intron (ENSMUSG00000021360.16, intron 1 of 2) protein_coding-intron (ENSMUSG00000021360.16, intron 1 of 2) 3316 ENSMUSG00000093269.1 ENSMUSG00000093269 ENSMUST00000175528 Mir5124a miRNA Interval_158320 chr8 81177303 81177647 + 0 NA Intergenic Intergenic 20873 ENSMUSG00000094615.2 ENSMUSG00000094615 ENSMUST00000178708 Gm4899 processed_pseudogene Interval_33304 chr11 115813204 115815244 + 0 NA promoter-TSS (ENSMUSG00000020781.14) protein_coding-promoter-TSS (ENSMUSG00000020781.14) -585 ENSMUSG00000034471.12 ENSMUSG00000034471 ENSMUST00000156812 Caskin2 protein_coding Interval_138256 chr6 86650688 86651005 + 0 NA TTS (ENSMUSG00000001156.9) protein_coding-TTS (ENSMUSG00000001156.9) 14705 ENSMUSG00000108291.1 ENSMUSG00000108291 ENSMUST00000205194 Gm44292 TEC Interval_75946 chr17 73474305 73474850 + 0 NA Intergenic Intergenic -19674 ENSMUSG00000117023.1 ENSMUSG00000117023 ENSMUST00000233268 Gm49876 antisense Interval_128537 chr5 113896014 113896303 + 0 NA intron (ENSMUSG00000004530.12, intron 1 of 1) protein_coding-intron (ENSMUSG00000004530.12, intron 1 of 10) 8740 ENSMUSG00000105071.1 ENSMUSG00000105071 ENSMUST00000200487 Gm43336 TEC Interval_152572 chr7 134705982 134706365 + 0 NA intron (ENSMUSG00000058325.6, intron 1 of 18) protein_coding-intron (ENSMUSG00000058325.6, intron 1 of 51) 35486 ENSMUSG00000058325.6 ENSMUSG00000058325 ENSMUST00000210121 Dock1 protein_coding Interval_134415 chr6 28460420 28461075 + 0 NA Intergenic Intergenic 6234 ENSMUSG00000107130.1 ENSMUSG00000107130 ENSMUST00000202284 Gm43264 unprocessed_pseudogene Interval_62241 chr15 89109431 89110678 + 0 NA exon (ENSMUSG00000051786.15, exon 5 of 25) protein_coding-exon (ENSMUSG00000051786.15, exon 5 of 25) 13058 ENSMUSG00000051786.15 ENSMUSG00000051786 ENSMUST00000231098 Tubgcp6 protein_coding Interval_99311 chr2 158855672 158855864 + 0 NA intron (ENSMUSG00000027655.14, intron 21 of 21) protein_coding-intron (ENSMUSG00000027655.14, intron 20 of 20) 28350 ENSMUSG00000027655.14 ENSMUSG00000027655 ENSMUST00000143195 Dhx35 protein_coding Interval_99701 chr2 164392821 164393508 + 0 NA TTS (ENSMUSG00000016995.17) protein_coding-TTS (ENSMUSG00000016995.17) -4069 ENSMUSG00000017002.14 ENSMUSG00000017002 ENSMUST00000167427 Slpi protein_coding Interval_74168 chr17 46875564 46876999 + 0 NA Intergenic Intergenic -14403 ENSMUSG00000036430.8 ENSMUSG00000036430 ENSMUST00000040434 Tbcc protein_coding Interval_61928 chr15 85306474 85306741 + 0 NA Intergenic Intergenic -29638 ENSMUSG00000016541.10 ENSMUSG00000016541 ENSMUST00000163242 Atxn10 protein_coding Interval_9511 chr1 158250448 158250697 + 0 NA intron (ENSMUSG00000004031.13, intron 6 of 7) protein_coding-intron (ENSMUSG00000004031.13, intron 6 of 7) 105657 ENSMUSG00000004031.13 ENSMUSG00000004031 ENSMUST00000192709 Brinp2 protein_coding Interval_97637 chr2 141416660 141417543 + 0 NA intron (ENSMUSG00000068205.14, intron 5 of 16) protein_coding-intron (ENSMUSG00000068205.14, intron 5 of 17) -130110 ENSMUSG00000086450.1 ENSMUSG00000086450 ENSMUST00000151538 Macrod2os1 antisense Interval_16505 chr10 63252816 63253960 + 0 NA TTS (ENSMUSG00000112411.1) TEC-TTS (ENSMUSG00000112411.1) 2456 ENSMUSG00000112411.1 ENSMUSG00000112411 ENSMUST00000218100 Gm19337 TEC Interval_122986 chr5 28174260 28175568 + 0 NA Intergenic Intergenic -6074 ENSMUSG00000106160.1 ENSMUSG00000106160 ENSMUST00000199117 Gm43610 TEC Interval_133259 chr5 150912182 150912766 + 0 NA Intergenic Intergenic -29832 ENSMUSG00000107047.1 ENSMUSG00000107047 ENSMUST00000200887 Gm43298 lincRNA Interval_63667 chr15 102670401 102672562 + 0 NA promoter-TSS (ENSMUSG00000062683.11) protein_coding-promoter-TSS (ENSMUSG00000062683.11) 385 ENSMUSG00000076009.1 ENSMUSG00000076009 ENSMUST00000102055 Mir688 miRNA Interval_4490 chr1 74532033 74533648 + 0 NA intron (ENSMUSG00000033364.13, intron 1 of 25) protein_coding-intron (ENSMUSG00000033364.13, intron 1 of 25) 9313 ENSMUSG00000026174.9 ENSMUSG00000026174 ENSMUST00000147810 Cnot9 protein_coding Interval_169450 chr9 97450625 97450965 + 0 NA intron (ENSMUSG00000032452.12, intron 17 of 17) protein_coding-intron (ENSMUSG00000032452.12, intron 17 of 17) -11168 ENSMUSG00000077208.1 ENSMUSG00000077208 ENSMUST00000104020 Gm25607 snoRNA Interval_106681 chr3 98614307 98614674 + 0 NA intron (ENSMUSG00000050064.14, intron 1 of 4) protein_coding-intron (ENSMUSG00000050064.14, intron 1 of 4) 15762 ENSMUSG00000038092.6 ENSMUSG00000038092 ENSMUST00000044094 Hsd3b5 protein_coding Interval_122300 chr5 21034389 21034658 + 0 NA intron (ENSMUSG00000028771.13, intron 1 of 17) protein_coding-intron (ENSMUSG00000028771.13, intron 1 of 17) 2771 ENSMUSG00000106158.1 ENSMUSG00000106158 ENSMUST00000196295 Gm43216 TEC Interval_125647 chr5 73013373 73014829 + 0 NA exon (ENSMUSG00000081849.2, exon 1 of 4) unitary_pseudogene-exon (ENSMUSG00000081849.2, exon 1 of 4) 573 ENSMUSG00000081849.2 ENSMUSG00000081849 ENSMUST00000121417 Gm15847 unitary_pseudogene Interval_122311 chr5 21171651 21172394 + 0 NA Intergenic Intergenic 40946 ENSMUSG00000106104.1 ENSMUSG00000106104 ENSMUST00000197733 Gm42660 TEC Interval_103971 chr3 55739205 55739461 + 0 NA intron (ENSMUSG00000027799.12, intron 2 of 18) protein_coding-intron (ENSMUSG00000027799.12, intron 41 of 57) -43177 ENSMUSG00000056947.5 ENSMUSG00000056947 ENSMUST00000075422 Mab21l1 protein_coding Interval_44869 chr13 49224498 49226228 + 0 NA Intergenic Intergenic 15255 ENSMUSG00000021384.14 ENSMUSG00000021384 ENSMUST00000131880 Susd3 protein_coding Interval_46729 chr13 69682443 69683004 + 0 NA intron (ENSMUSG00000113299.1, intron 3 of 5) lincRNA-intron (ENSMUSG00000113299.1, intron 3 of 5) -13779 ENSMUSG00000114171.1 ENSMUSG00000114171 ENSMUST00000221036 Gm18313 processed_pseudogene Interval_126312 chr5 86440691 86441495 + 0 NA intron (ENSMUSG00000072845.3, intron 3 of 8) protein_coding-intron (ENSMUSG00000072845.3, intron 3 of 8) -22748 ENSMUSG00000072845.3 ENSMUSG00000072845 ENSMUST00000198504 Tmprss11a protein_coding Interval_135992 chr6 49298085 49299875 + 0 NA Intergenic Intergenic 12259 ENSMUSG00000107916.1 ENSMUSG00000107916 ENSMUST00000203717 Gm18011 processed_pseudogene Interval_116732 chr4 116986567 116987481 + 0 NA exon (ENSMUSG00000033948.3, exon 14 of 14) protein_coding-exon (ENSMUSG00000033948.3, exon 14 of 14) 6573 ENSMUSG00000028684.14 ENSMUSG00000028684 ENSMUST00000139816 Urod protein_coding Interval_140918 chr6 122742092 122745194 + 0 NA promoter-TSS (ENSMUSG00000003153.10) protein_coding-promoter-TSS (ENSMUSG00000003153.10) 36154 ENSMUSG00000012396.12 ENSMUSG00000012396 ENSMUST00000012540 Nanog protein_coding Interval_90870 chr2 33098352 33098564 + 0 NA intron (ENSMUSG00000038860.15, intron 2 of 29) protein_coding-intron (ENSMUSG00000038860.15, intron 2 of 4) 59712 ENSMUSG00000038831.16 ENSMUSG00000038831 ENSMUST00000113164 Ralgps1 protein_coding Interval_20210 chr10 115921133 115921885 + 0 NA Intergenic Intergenic -51987 ENSMUSG00000112513.1 ENSMUSG00000112513 ENSMUST00000220081 4930422I22Rik antisense Interval_71925 chr17 27038358 27041861 + 0 NA Intergenic Intergenic 10697 ENSMUSG00000048731.15 ENSMUSG00000048731 ENSMUST00000235543 Ggnbp1 protein_coding Interval_61276 chr15 80485606 80486243 + 0 NA intron (ENSMUSG00000050439.7, intron 5 of 6) protein_coding-intron (ENSMUSG00000050439.7, intron 4 of 5) 10032 ENSMUSG00000116345.1 ENSMUSG00000116345 ENSMUST00000230279 Gm19141 processed_pseudogene Interval_109644 chr3 145661795 145662341 + 0 NA intron (ENSMUSG00000097183.2, intron 1 of 1) lincRNA-intron (ENSMUSG00000097183.2, intron 1 of 1) 9974 ENSMUSG00000097183.2 ENSMUSG00000097183 ENSMUST00000197148 Gm17501 lincRNA Interval_33477 chr11 116740527 116740960 + 0 NA intron (ENSMUSG00000078586.3, intron 4 of 8) unprocessed_pseudogene-intron (ENSMUSG00000078586.3, intron 4 of 8) 9090 ENSMUSG00000078586.3 ENSMUSG00000078586 ENSMUST00000106377 Gm11735 unprocessed_pseudogene Interval_84432 chr19 10868909 10870553 + 0 NA promoter-TSS (ENSMUSG00000024736.15) protein_coding-promoter-TSS (ENSMUSG00000024736.15) -2593 ENSMUSG00000024736.15 ENSMUSG00000024736 ENSMUST00000238070 Tmem132a protein_coding Interval_165618 chr9 50443784 50444431 + 0 NA Intergenic Intergenic -50420 ENSMUSG00000032068.14 ENSMUSG00000032068 ENSMUST00000188047 Plet1 protein_coding Interval_101245 chr2 179804866 179805444 + 0 NA intron (ENSMUSG00000000305.12, intron 4 of 5) protein_coding-intron (ENSMUSG00000000305.12, intron 4 of 15) 27992 ENSMUSG00000000305.12 ENSMUSG00000000305 ENSMUST00000098996 Cdh4 protein_coding Interval_19540 chr10 102735408 102735670 + 0 NA Intergenic Intergenic -52224 ENSMUSG00000112221.1 ENSMUSG00000112221 ENSMUST00000219679 Gm47142 processed_pseudogene Interval_27189 chr11 63932162 63932593 + 0 NA Intergenic Intergenic -10087 ENSMUSG00000070407.5 ENSMUSG00000070407 ENSMUST00000094103 Hs3st3b1 protein_coding Interval_54933 chr14 76333494 76334315 + 0 NA Intergenic Intergenic 82447 ENSMUSG00000115625.1 ENSMUSG00000115625 ENSMUST00000227933 2900040C04Rik lincRNA Interval_71432 chr17 23716724 23717419 + 0 NA intron (ENSMUSG00000043747.12, intron 8 of 40) protein_coding-intron (ENSMUSG00000043747.12, intron 8 of 39) 3655 ENSMUSG00000043747.12 ENSMUSG00000043747 ENSMUST00000176095 1520401A03Rik protein_coding Interval_135534 chr6 40069411 40070079 + 0 NA intron (ENSMUSG00000057716.7, intron 2 of 3) protein_coding-intron (ENSMUSG00000057716.7, intron 2 of 3) -28977 ENSMUSG00000102623.1 ENSMUSG00000102623 ENSMUST00000194880 Gm37673 TEC Interval_102495 chr3 27205486 27205677 + 0 NA intron (ENSMUSG00000027698.14, intron 1 of 3) protein_coding-intron (ENSMUSG00000027698.14, intron 1 of 4) 17140 ENSMUSG00000027698.14 ENSMUSG00000027698 ENSMUST00000140872 Nceh1 protein_coding Interval_75063 chr17 62783115 62784616 + 0 NA intron (ENSMUSG00000048915.12, intron 1 of 3) protein_coding-intron (ENSMUSG00000048915.12, intron 1 of 4) 97279 ENSMUSG00000048915.12 ENSMUSG00000048915 ENSMUST00000078839 Efna5 protein_coding Interval_164958 chr9 43396600 43396957 + 0 NA Intergenic Intergenic 20153 ENSMUSG00000110823.1 ENSMUSG00000110823 ENSMUST00000216190 Gm36799 lincRNA Interval_23897 chr11 27978067 27978327 + 0 NA Intergenic Intergenic -67838 ENSMUSG00000083201.1 ENSMUSG00000083201 ENSMUST00000119821 Gm12080 processed_pseudogene Interval_78660 chr18 16582308 16582669 + 0 NA Intergenic Intergenic -146245 ENSMUSG00000085575.1 ENSMUSG00000085575 ENSMUST00000149095 Gm15485 antisense Interval_133520 chr6 6133660 6134120 + 0 NA intron (ENSMUSG00000015112.15, intron 4 of 17) protein_coding-intron (ENSMUSG00000015112.15, intron 4 of 17) 40061 ENSMUSG00000015112.15 ENSMUSG00000015112 ENSMUST00000177698 Slc25a13 protein_coding Interval_76796 chr17 84126607 84128612 + 0 NA Intergenic Intergenic 12232 ENSMUSG00000117485.1 ENSMUSG00000117485 ENSMUST00000234394 Gm19696 lincRNA Interval_89215 chr2 18110650 18112267 + 0 NA intron (ENSMUSG00000026743.16, intron 4 of 6) protein_coding-intron (ENSMUSG00000026743.16, intron 5 of 22) 18119 ENSMUSG00000092814.1 ENSMUSG00000092814 ENSMUST00000175073 Gm23638 miRNA Interval_74132 chr17 46694567 46695370 + 0 NA intron (ENSMUSG00000059409.9, intron 2 of 14) protein_coding-intron (ENSMUSG00000059409.9, intron 2 of 14) 10143 ENSMUSG00000059409.9 ENSMUSG00000059409 ENSMUST00000233757 Ppp2r5d protein_coding Interval_11270 chr1 180605983 180607698 + 0 NA Intergenic Intergenic 7852 ENSMUSG00000026496.11 ENSMUSG00000026496 ENSMUST00000195560 Parp1 protein_coding Interval_38799 chr12 82432047 82432593 + 0 NA intron (ENSMUSG00000042700.16, intron 15 of 21) protein_coding-intron (ENSMUSG00000042700.16, intron 14 of 20) 64217 ENSMUSG00000094374.2 ENSMUSG00000094374 ENSMUST00000179295 Gm5435 processed_pseudogene Interval_89529 chr2 21921011 21921217 + 0 NA Intergenic Intergenic -126059 ENSMUSG00000077572.1 ENSMUSG00000077572 ENSMUST00000104384 Gm24886 snoRNA Interval_76330 chr17 79114854 79115787 + 0 NA Intergenic Intergenic -11576 ENSMUSG00000117054.1 ENSMUSG00000117054 ENSMUST00000232888 Gm49869 processed_pseudogene Interval_164151 chr9 32002836 32003256 + 0 NA intron (ENSMUSG00000111771.1, intron 1 of 3) lincRNA-intron (ENSMUSG00000111771.1, intron 1 of 3) 2414 ENSMUSG00000111771.1 ENSMUSG00000111771 ENSMUST00000216368 Gm47465 lincRNA Interval_165265 chr9 45878082 45878381 + 0 NA intron (ENSMUSG00000042790.16, intron 5 of 8) protein_coding-intron (ENSMUSG00000042790.16, intron 6 of 13) 1417 ENSMUSG00000087734.1 ENSMUSG00000087734 ENSMUST00000157109 Gm24646 snRNA Interval_169112 chr9 92603419 92604221 + 0 NA intron (ENSMUSG00000032374.14, intron 15 of 19) protein_coding-intron (ENSMUSG00000032374.14, intron 14 of 18) 2478 ENSMUSG00000032374.14 ENSMUSG00000032374 ENSMUST00000190075 Plod2 protein_coding Interval_85559 chr19 28546456 28547536 + 0 NA intron (ENSMUSG00000052942.13, intron 2 of 10) protein_coding-intron (ENSMUSG00000052942.13, intron 2 of 9) 36298 ENSMUSG00000089952.1 ENSMUSG00000089952 ENSMUST00000162380 4933413C19Rik sense_intronic Interval_144000 chr7 18883991 18885277 + 0 NA promoter-TSS (ENSMUSG00000030413.7) protein_coding-promoter-TSS (ENSMUSG00000030413.7) 7718 ENSMUSG00000074358.9 ENSMUSG00000074358 ENSMUST00000139077 Ccdc61 protein_coding Interval_86223 chr19 37902380 37902570 + 0 NA promoter-TSS (ENSMUSG00000048612.16) protein_coding-promoter-TSS (ENSMUSG00000048612.16) 32205 ENSMUSG00000118115.1 ENSMUSG00000118115 ENSMUST00000237198 Gm4757 processed_pseudogene Interval_28885 chr11 79046206 79047359 + 0 NA intron (ENSMUSG00000018334.18, intron 2 of 18) protein_coding-intron (ENSMUSG00000018334.18, intron 3 of 18) 13054 ENSMUSG00000018334.18 ENSMUSG00000018334 ENSMUST00000129463 Ksr1 protein_coding Interval_104164 chr3 59321265 59321722 + 0 NA intron (ENSMUSG00000036334.12, intron 6 of 6) protein_coding-intron (ENSMUSG00000036334.12, intron 6 of 6) 22763 ENSMUSG00000036334.12 ENSMUSG00000036334 ENSMUST00000195983 Igsf10 protein_coding Interval_27451 chr11 67890683 67890893 + 0 NA intron (ENSMUSG00000020905.11, intron 7 of 14) protein_coding-intron (ENSMUSG00000020905.11, intron 7 of 14) 30421 ENSMUSG00000020905.11 ENSMUSG00000020905 ENSMUST00000152120 Usp43 protein_coding Interval_147764 chr7 73434963 73437216 + 0 NA intron (ENSMUSG00000078671.11, intron 3 of 4) protein_coding-intron (ENSMUSG00000078671.11, intron 37 of 38) 8162 ENSMUSG00000078671.11 ENSMUSG00000078671 ENSMUST00000200218 Chd2 protein_coding Interval_71537 chr17 24426109 24427497 + 0 NA promoter-TSS (ENSMUSG00000024132.6) protein_coding-promoter-TSS (ENSMUSG00000024132.6) -10581 ENSMUSG00000024132.6 ENSMUSG00000024132 ENSMUST00000235124 Eci1 protein_coding Interval_168811 chr9 87400734 87401563 + 0 NA Intergenic Intergenic 6898 ENSMUSG00000099385.1 ENSMUSG00000099385 ENSMUST00000188230 Gm9540 processed_pseudogene Interval_109339 chr3 139151997 139152981 + 0 NA Intergenic Intergenic -23718 ENSMUSG00000090801.1 ENSMUSG00000090801 ENSMUST00000170405 Gm4862 processed_pseudogene Interval_168698 chr9 86034709 86035777 + 0 NA Intergenic Intergenic -92043 ENSMUSG00000110946.1 ENSMUSG00000110946 ENSMUST00000213921 Gm47604 lincRNA Interval_153613 chr8 3739878 3740101 + 0 NA TTS (ENSMUSG00000089956.1) antisense-TTS (ENSMUSG00000089956.1) 8938 ENSMUSG00000031494.7 ENSMUSG00000031494 ENSMUST00000207906 Cd209a protein_coding Interval_36658 chr12 51814007 51814244 + 0 NA intron (ENSMUSG00000035247.16, intron 2 of 42) protein_coding-intron (ENSMUSG00000035247.16, intron 2 of 42) 26496 ENSMUSG00000112746.1 ENSMUSG00000112746 ENSMUST00000218295 Gm19309 processed_pseudogene Interval_128388 chr5 113061658 113062207 + 0 NA TTS (ENSMUSG00000105406.1) processed_pseudogene-TTS (ENSMUSG00000105406.1) 1419 ENSMUSG00000105406.1 ENSMUSG00000105406 ENSMUST00000198638 Gm43247 processed_pseudogene Interval_62573 chr15 94784208 94785138 + 0 NA intron (ENSMUSG00000063296.5, intron 3 of 7) protein_coding-intron (ENSMUSG00000063296.5, intron 3 of 7) -103287 ENSMUSG00000095169.1 ENSMUSG00000095169 ENSMUST00000103977 Gm25546 snoRNA Interval_68890 chr16 87896088 87896553 + 0 NA TTS (ENSMUSG00000022935.16) protein_coding-TTS (ENSMUSG00000022935.16) 108748 ENSMUSG00000055972.5 ENSMUSG00000055972 ENSMUST00000189929 2810407A14Rik lincRNA Interval_46799 chr13 70643490 70644316 + 0 NA Intergenic Intergenic -6241 ENSMUSG00000113334.1 ENSMUSG00000113334 ENSMUST00000222964 D030007L05Rik lincRNA Interval_87000 chr19 45458827 45459109 + 0 NA exon (ENSMUSG00000025217.15, exon 5 of 5) protein_coding-exon (ENSMUSG00000025217.15, exon 5 of 5) -7773 ENSMUSG00000057605.4 ENSMUSG00000057605 ENSMUST00000077435 Gm6807 processed_pseudogene Interval_22450 chr11 10309130 10310619 + 0 NA Intergenic Intergenic 67208 ENSMUSG00000084045.1 ENSMUSG00000084045 ENSMUST00000118697 Gm11997 processed_pseudogene Interval_164858 chr9 42518130 42518565 + 0 NA exon (ENSMUSG00000032017.14, exon 21 of 21) protein_coding-exon (ENSMUSG00000032017.14, exon 21 of 21) 2484 ENSMUSG00000093745.1 ENSMUSG00000093745 ENSMUST00000176676 Gm24420 misc_RNA Interval_18397 chr10 85527828 85528192 + 0 NA intron (ENSMUSG00000020042.15, intron 1 of 16) protein_coding-intron (ENSMUSG00000020042.15, intron 1 of 9) -117193 ENSMUSG00000020042.15 ENSMUSG00000020042 ENSMUST00000145433 Btbd11 protein_coding Interval_56094 chr14 105640754 105641908 + 0 NA intron (ENSMUSG00000110080.1, intron 1 of 6) processed_transcript-intron (ENSMUSG00000110080.1, intron 1 of 5) 2394 ENSMUSG00000110080.1 ENSMUSG00000110080 ENSMUST00000211689 Gm6145 processed_transcript Interval_89134 chr2 17149599 17149888 + 0 NA Intergenic Intergenic -19482 ENSMUSG00000081525.1 ENSMUSG00000081525 ENSMUST00000118746 Gm13325 processed_pseudogene Interval_57482 chr15 11653872 11654622 + 0 NA Intergenic Intergenic -23501 ENSMUSG00000115076.1 ENSMUSG00000115076 ENSMUST00000228923 Gm49106 lincRNA Interval_50476 chr14 13917165 13917990 + 0 NA promoter-TSS (ENSMUSG00000079357.9) protein_coding-promoter-TSS (ENSMUSG00000079357.9) -3099 ENSMUSG00000084902.2 ENSMUSG00000084902 ENSMUST00000144914 Gm281 protein_coding Interval_137128 chr6 67822635 67822857 + 0 NA Intergenic Intergenic -17047 ENSMUSG00000093906.5 ENSMUSG00000093906 ENSMUST00000103308 Igkv9-129 IG_V_gene Interval_6369 chr1 106425051 106426438 + 0 NA Intergenic Intergenic -13856 ENSMUSG00000099604.1 ENSMUSG00000099604 ENSMUST00000189471 Gm6651 processed_pseudogene Interval_159355 chr8 94011824 94013028 + 0 NA promoter-TSS (ENSMUSG00000031751.14) protein_coding-promoter-TSS (ENSMUSG00000031751.14) -299 ENSMUSG00000031751.14 ENSMUSG00000031751 ENSMUST00000143265 Amfr protein_coding Interval_73324 chr17 36215429 36216711 + 0 NA exon (ENSMUSG00000092362.3, exon 2 of 5) unprocessed_pseudogene-exon (ENSMUSG00000092362.3, exon 2 of 5) 342 ENSMUSG00000092362.3 ENSMUSG00000092362 ENSMUST00000173047 Gm20392 unprocessed_pseudogene Interval_145569 chr7 35658646 35659796 + 0 NA Intergenic Intergenic -16177 ENSMUSG00000030417.15 ENSMUSG00000030417 ENSMUST00000130340 Pdcd5 protein_coding Interval_53363 chr14 56667551 56668830 + 0 NA promoter-TSS (ENSMUSG00000079184.10) protein_coding-promoter-TSS (ENSMUSG00000079184.10) -66 ENSMUSG00000110165.1 ENSMUSG00000110165 ENSMUST00000210920 Gm4032 transcribed_processed_pseudogene Interval_74465 chr17 51221741 51221953 + 0 NA Intergenic Intergenic 15215 ENSMUSG00000117168.1 ENSMUSG00000117168 ENSMUST00000233846 Gm49908 processed_pseudogene Interval_134109 chr6 20455239 20455454 + 0 NA Intergenic Intergenic 515644 ENSMUSG00000106763.1 ENSMUSG00000106763 ENSMUST00000201133 Gm19102 processed_pseudogene Interval_74980 chr17 58909051 58910332 + 0 NA intron (ENSMUSG00000024227.14, intron 8 of 12) protein_coding-intron (ENSMUSG00000024227.14, intron 8 of 12) -16196 ENSMUSG00000024227.14 ENSMUSG00000024227 ENSMUST00000177360 Pdzph1 protein_coding Interval_29441 chr11 84038319 84038857 + 0 NA intron (ENSMUSG00000034940.15, intron 5 of 6) protein_coding-intron (ENSMUSG00000034940.15, intron 19 of 21) 19387 ENSMUSG00000034940.15 ENSMUSG00000034940 ENSMUST00000132887 Synrg protein_coding Interval_32705 chr11 109853032 109854319 + 0 NA Intergenic Intergenic 7797 ENSMUSG00000087393.1 ENSMUSG00000087393 ENSMUST00000143247 1700023C21Rik lincRNA Interval_35644 chr12 26542265 26542928 + 0 NA Intergenic Intergenic -54663 ENSMUSG00000113524.1 ENSMUSG00000113524 ENSMUST00000223018 Gm47847 lincRNA Interval_39872 chr12 99253405 99253850 + 0 NA intron (ENSMUSG00000033713.12, intron 1 of 3) protein_coding-intron (ENSMUSG00000033713.12, intron 4 of 5) 7956 ENSMUSG00000093419.1 ENSMUSG00000093419 ENSMUST00000177490 Gm19898 processed_pseudogene Interval_99202 chr2 157988934 157989616 + 0 NA intron (ENSMUSG00000027650.12, intron 6 of 6) protein_coding-intron (ENSMUSG00000027650.12, intron 7 of 7) 17937 ENSMUSG00000027650.12 ENSMUSG00000027650 ENSMUST00000124338 Tti1 protein_coding Interval_163975 chr9 30102123 30102384 + 0 NA Intergenic Intergenic -38534 ENSMUSG00000111175.1 ENSMUSG00000111175 ENSMUST00000214849 Gm19640 processed_pseudogene Interval_72386 chr17 29518805 29520397 + 0 NA exon (ENSMUSG00000091614.2, exon 1 of 1) protein_coding-exon (ENSMUSG00000091614.2, exon 1 of 1) 26564 ENSMUSG00000024014.8 ENSMUSG00000024014 ENSMUST00000234270 Pim1 protein_coding Interval_119394 chr4 137438601 137439476 + 0 NA promoter-TSS (ENSMUSG00000086845.1) antisense-promoter-TSS (ENSMUSG00000086845.1) -643 ENSMUSG00000086845.1 ENSMUSG00000086845 ENSMUST00000140495 Gm13010 antisense Interval_82186 chr18 68553646 68553931 + 0 NA Intergenic Intergenic -5634 ENSMUSG00000117811.1 ENSMUSG00000117811 ENSMUST00000238121 Gm29677 lincRNA Interval_121535 chr5 3299889 3300272 + 0 NA Intergenic Intergenic 29761 ENSMUSG00000106658.1 ENSMUSG00000106658 ENSMUST00000197473 Gm36548 lincRNA Interval_46486 chr13 66530084 66530811 + 0 NA Intergenic Intergenic -3578 ENSMUSG00000114685.1 ENSMUSG00000114685 ENSMUST00000224365 Gm48351 processed_pseudogene Interval_44449 chr13 44892497 44892877 + 0 NA intron (ENSMUSG00000038518.15, intron 5 of 15) protein_coding-intron (ENSMUSG00000038518.15, intron 6 of 18) -54404 ENSMUSG00000088189.1 ENSMUSG00000088189 ENSMUST00000157564 Gm22213 snoRNA Interval_163991 chr9 30515639 30516809 + 0 NA Intergenic Intergenic 3284 ENSMUSG00000111438.1 ENSMUSG00000111438 ENSMUST00000214262 Rps2-ps12 processed_pseudogene Interval_101492 chr2 181878292 181878953 + 0 NA Intergenic Intergenic 14262 ENSMUSG00000038628.8 ENSMUSG00000038628 ENSMUST00000153214 Polr3k protein_coding Interval_54899 chr14 76110294 76111532 + 0 NA promoter-TSS (ENSMUSG00000022008.4) protein_coding-promoter-TSS (ENSMUSG00000022008.4) 22 ENSMUSG00000022009.1 ENSMUSG00000022009 ENSMUST00000022586 Nufip1 protein_coding Interval_161588 chr8 121400693 121400900 + 0 NA intron (ENSMUSG00000092329.1, intron 1 of 15) protein_coding-intron (ENSMUSG00000092329.1, intron 1 of 15) -20442 ENSMUSG00000097783.2 ENSMUSG00000097783 ENSMUST00000180597 Gm26747 lincRNA Interval_86597 chr19 41962701 41962892 + 0 NA TTS (ENSMUSG00000025159.8) protein_coding-TTS (ENSMUSG00000025159.8) -12392 ENSMUSG00000089102.1 ENSMUSG00000089102 ENSMUST00000158477 Gm23113 snRNA Interval_69765 chr16 96114914 96116070 + 0 NA TTS (ENSMUSG00000117270.1) lincRNA-TTS (ENSMUSG00000117270.1) 9847 ENSMUSG00000040681.16 ENSMUSG00000040681 ENSMUST00000233297 Hmgn1 protein_coding Interval_72359 chr17 29405228 29406335 + 0 NA Intergenic Intergenic 28976 ENSMUSG00000117575.1 ENSMUSG00000117575 ENSMUST00000234181 Gm36486 processed_transcript Interval_129859 chr5 122778668 122779825 + 0 NA promoter-TSS (ENSMUSG00000029471.13) protein_coding-promoter-TSS (ENSMUSG00000029471.13) 87 ENSMUSG00000029471.13 ENSMUSG00000029471 ENSMUST00000199599 Camkk2 protein_coding Interval_83247 chr18 82983725 82984273 + 0 NA intron (ENSMUSG00000058881.13, intron 2 of 5) protein_coding-intron (ENSMUSG00000058881.13, intron 2 of 5) -27904 ENSMUSG00000118094.1 ENSMUSG00000118094 ENSMUST00000236941 AC142100.1 processed_transcript Interval_24656 chr11 35692918 35693813 + 0 NA intron (ENSMUSG00000056427.10, intron 32 of 35) protein_coding-intron (ENSMUSG00000056427.10, intron 32 of 35) -76119 ENSMUSG00000018846.8 ENSMUSG00000018846 ENSMUST00000018990 Pank3 protein_coding Interval_122604 chr5 24145946 24146280 + 0 NA intron (ENSMUSG00000028986.12, intron 7 of 11) protein_coding-intron (ENSMUSG00000028986.12, intron 7 of 10) -7181 ENSMUSG00000106665.1 ENSMUSG00000106665 ENSMUST00000196080 Gm43389 TEC Interval_24927 chr11 41515579 41515780 + 0 NA Intergenic Intergenic 16942 ENSMUSG00000058809.8 ENSMUSG00000058809 ENSMUST00000119713 Hspd1-ps3 processed_pseudogene Interval_11721 chr1 184879081 184879498 + 0 NA intron (ENSMUSG00000039349.5, intron 1 of 1) protein_coding-intron (ENSMUSG00000039349.5, intron 1 of 1) 3929 ENSMUSG00000039349.5 ENSMUSG00000039349 ENSMUST00000048308 C130074G19Rik protein_coding Interval_96084 chr2 119668855 119669560 + 0 NA promoter-TSS (ENSMUSG00000081416.1) processed_pseudogene-promoter-TSS (ENSMUSG00000081416.1) 48 ENSMUSG00000081416.1 ENSMUSG00000081416 ENSMUST00000121637 Gm14383 processed_pseudogene Interval_148396 chr7 81012731 81013019 + 0 NA intron (ENSMUSG00000005621.11, intron 2 of 9) protein_coding-intron (ENSMUSG00000005621.11, intron 2 of 9) -10545 ENSMUSG00000005621.11 ENSMUSG00000005621 ENSMUST00000125137 Zfp592 protein_coding Interval_162179 chr8 125726053 125726763 + 0 NA Intergenic Intergenic -9427 ENSMUSG00000031851.14 ENSMUSG00000031851 ENSMUST00000152189 Ntpcr protein_coding Interval_78851 chr18 20968716 20970155 + 0 NA intron (ENSMUSG00000033107.6, intron 1 of 5) protein_coding-intron (ENSMUSG00000033107.6, intron 1 of 5) 7963 ENSMUSG00000033107.6 ENSMUSG00000033107 ENSMUST00000234316 Rnf125 protein_coding Interval_86486 chr19 41013273 41014171 + 0 NA Intergenic Intergenic -15663 ENSMUSG00000025014.13 ENSMUSG00000025014 ENSMUST00000237959 Dntt protein_coding Interval_82931 chr18 79536543 79536713 + 0 NA Intergenic Intergenic 17049 ENSMUSG00000087717.1 ENSMUSG00000087717 ENSMUST00000157092 Gm25824 snoRNA Interval_154275 chr8 13966008 13966381 + 0 NA intron (ENSMUSG00000050052.12, intron 2 of 3) protein_coding-intron (ENSMUSG00000050052.12, intron 1 of 2) 8499 ENSMUSG00000050052.12 ENSMUSG00000050052 ENSMUST00000119182 Tdrp protein_coding Interval_165247 chr9 45760811 45761329 + 0 NA Intergenic Intergenic 33196 ENSMUSG00000043987.18 ENSMUSG00000043987 ENSMUST00000214868 Cep164 protein_coding Interval_12364 chr1 192598337 192599210 + 0 NA intron (ENSMUSG00000037375.16, intron 9 of 11) protein_coding-intron (ENSMUSG00000037375.16, intron 9 of 11) -146798 ENSMUSG00000094131.1 ENSMUSG00000094131 ENSMUST00000082947 Gm22265 snRNA Interval_144099 chr7 19413791 19415046 + 0 NA intron (ENSMUSG00000030399.2, intron 2 of 7) protein_coding-intron (ENSMUSG00000030399.2, intron 1 of 6) 3393 ENSMUSG00000030399.2 ENSMUSG00000030399 ENSMUST00000003643 Ckm protein_coding Interval_2263 chr1 37488375 37488923 + 0 NA promoter-TSS (ENSMUSG00000103948.1) TEC-promoter-TSS (ENSMUSG00000103948.1) -44 ENSMUSG00000103948.1 ENSMUSG00000103948 ENSMUST00000192316 4930594C11Rik TEC Interval_142747 chr6 145307989 145308391 + 0 NA intron (ENSMUSG00000087277.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000087277.1, intron 1 of 1) 3880 ENSMUSG00000108234.1 ENSMUSG00000108234 ENSMUST00000204474 Gm44428 TEC Interval_111025 chr4 11298091 11298534 + 0 NA intron (ENSMUSG00000045205.16, intron 6 of 12) protein_coding-intron (ENSMUSG00000045205.16, intron 6 of 18) -18893 ENSMUSG00000089185.1 ENSMUSG00000089185 ENSMUST00000158560 Gm22940 snRNA Interval_71039 chr17 17373541 17375104 + 0 NA promoter-TSS (ENSMUSG00000116564.1) protein_coding-promoter-TSS (ENSMUSG00000116564.1) -116 ENSMUSG00000116590.1 ENSMUSG00000116590 ENSMUST00000232288 AC154200.1 lincRNA Interval_124383 chr5 45402522 45403192 + 0 NA intron (ENSMUSG00000029092.9, intron 1 of 5) lincRNA-intron (ENSMUSG00000029092.9, intron 1 of 5) -31532 ENSMUSG00000105255.1 ENSMUSG00000105255 ENSMUST00000196216 Gm42413 antisense Interval_17301 chr10 75703708 75703915 + 0 NA intron (ENSMUSG00000020196.10, intron 2 of 3) protein_coding-intron (ENSMUSG00000020196.10, intron 26 of 36) 28809 ENSMUSG00000020196.10 ENSMUSG00000020196 ENSMUST00000218480 Cabin1 protein_coding Interval_97061 chr2 130895231 130895601 + 0 NA intron (ENSMUSG00000085566.1, intron 1 of 1) processed_transcript-intron (ENSMUSG00000085566.1, intron 1 of 3) 10980 ENSMUSG00000085566.1 ENSMUSG00000085566 ENSMUST00000133766 A730017L22Rik processed_transcript Interval_88363 chr2 4454580 4455721 + 0 NA intron (ENSMUSG00000026657.17, intron 3 of 24) protein_coding-intron (ENSMUSG00000026657.17, intron 2 of 23) 11520 ENSMUSG00000086874.1 ENSMUSG00000086874 ENSMUST00000139479 Gm13175 antisense Interval_154778 chr8 23289530 23290349 + 0 NA TTS (ENSMUSG00000077399.1) snoRNA-TTS (ENSMUSG00000077399.1) 225 ENSMUSG00000077399.1 ENSMUSG00000077399 ENSMUST00000104211 Gm24335 snoRNA Interval_103184 chr3 36449235 36449719 + 0 NA intron (ENSMUSG00000027712.13, intron 3 of 3) protein_coding-intron (ENSMUSG00000027712.13, intron 12 of 12) 26047 ENSMUSG00000098808.1 ENSMUSG00000098808 ENSMUST00000184519 Mir7009 miRNA Interval_53558 chr14 59206375 59206641 + 0 NA intron (ENSMUSG00000035469.17, intron 2 of 12) protein_coding-intron (ENSMUSG00000035469.17, intron 1 of 12) -11097 ENSMUSG00000035469.17 ENSMUSG00000035469 ENSMUST00000147280 Rcbtb1 protein_coding Interval_33144 chr11 114726982 114727971 + 0 NA promoter-TSS (ENSMUSG00000034706.16) protein_coding-promoter-TSS (ENSMUSG00000034706.16) 68 ENSMUSG00000034706.16 ENSMUSG00000034706 ENSMUST00000130692 Dnaic2 protein_coding Interval_10812 chr1 175540467 175540896 + 0 NA Intergenic Intergenic -33628 ENSMUSG00000103079.1 ENSMUSG00000103079 ENSMUST00000195831 Gm36307 lincRNA Interval_174156 chrX 136820180 136820520 + 0 NA Intergenic Intergenic -12901 ENSMUSG00000031425.15 ENSMUSG00000031425 ENSMUST00000144880 Plp1 protein_coding Interval_8103 chr1 135739553 135739923 + 0 NA intron (ENSMUSG00000026421.14, intron 2 of 5) protein_coding-intron (ENSMUSG00000026421.14, intron 2 of 5) 19677 ENSMUSG00000026421.14 ENSMUSG00000026421 ENSMUST00000027677 Csrp1 protein_coding Interval_164167 chr9 32127154 32127541 + 0 NA intron (ENSMUSG00000041444.14, intron 1 of 21) protein_coding-intron (ENSMUSG00000041444.14, intron 1 of 21) 47821 ENSMUSG00000111382.1 ENSMUSG00000111382 ENSMUST00000213983 Gm47536 processed_pseudogene Interval_133962 chr6 16762300 16763032 + 0 NA Intergenic Intergenic -14858 ENSMUSG00000107022.1 ENSMUSG00000107022 ENSMUST00000201757 Gm36669 lincRNA Interval_144955 chr7 29085770 29086313 + 0 NA exon (ENSMUSG00000030592.18, exon 34 of 106) protein_coding-exon (ENSMUSG00000030592.18, exon 34 of 106) -2347 ENSMUSG00000089219.1 ENSMUSG00000089219 ENSMUST00000158594 Mir1963 miRNA Interval_92081 chr2 53070543 53072083 + 0 NA intron (ENSMUSG00000036053.17, intron 7 of 26) protein_coding-intron (ENSMUSG00000036053.17, intron 7 of 26) 119874 ENSMUSG00000061136.16 ENSMUSG00000061136 ENSMUST00000132031 Prpf40a protein_coding Interval_141631 chr6 131512985 131513720 + 0 NA intron (ENSMUSG00000094113.7, intron 3 of 4) protein_coding-intron (ENSMUSG00000094113.7, intron 3 of 4) -19570 ENSMUSG00000077015.1 ENSMUSG00000077015 ENSMUST00000103827 Gm22190 miRNA Interval_128423 chr5 113257188 113258301 + 0 NA TTS (ENSMUSG00000042216.13) protein_coding-TTS (ENSMUSG00000042216.13) 21592 ENSMUSG00000042216.13 ENSMUSG00000042216 ENSMUST00000140981 Sgsm1 protein_coding Interval_75777 chr17 71259681 71260980 + 0 NA intron (ENSMUSG00000024053.11, intron 4 of 7) protein_coding-intron (ENSMUSG00000024053.11, intron 4 of 7) 49951 ENSMUSG00000024053.11 ENSMUSG00000024053 ENSMUST00000233659 Emilin2 protein_coding Interval_147878 chr7 74979307 74979729 + 0 NA Intergenic Intergenic -16821 ENSMUSG00000089522.1 ENSMUSG00000089522 ENSMUST00000158897 Gm22326 misc_RNA Interval_116052 chr4 107278350 107278703 + 0 NA intron (ENSMUSG00000063172.13, intron 5 of 5) protein_coding-intron (ENSMUSG00000063172.13, intron 5 of 5) 8092 ENSMUSG00000082941.1 ENSMUSG00000082941 ENSMUST00000119210 Gm12850 processed_pseudogene Interval_92720 chr2 63979646 63980336 + 0 NA TTS (ENSMUSG00000075324.13) protein_coding-TTS (ENSMUSG00000075324.13) 118019 ENSMUSG00000075324.13 ENSMUSG00000075324 ENSMUST00000153538 Fign protein_coding Interval_30233 chr11 91330710 91331188 + 0 NA Intergenic Intergenic 246609 ENSMUSG00000046755.5 ENSMUSG00000046755 ENSMUST00000061019 Kif2b protein_coding Interval_90714 chr2 32072902 32073264 + 0 NA intron (ENSMUSG00000050592.8, intron 2 of 5) protein_coding-intron (ENSMUSG00000050592.8, intron 1 of 1) -8172 ENSMUSG00000090157.7 ENSMUSG00000090157 ENSMUST00000156387 Gm16534 processed_transcript Interval_141867 chr6 135010960 135012172 + 0 NA promoter-TSS (ENSMUSG00000030204.10) protein_coding-promoter-TSS (ENSMUSG00000030204.10) -58 ENSMUSG00000030204.10 ENSMUSG00000030204 ENSMUST00000155022 Ddx47 protein_coding Interval_107439 chr3 107695731 107697040 + 0 NA promoter-TSS (ENSMUSG00000027893.14) protein_coding-promoter-TSS (ENSMUSG00000027893.14) -422 ENSMUSG00000027893.14 ENSMUSG00000027893 ENSMUST00000138116 Ahcyl1 protein_coding Interval_54404 chr14 68561358 68561578 + 0 NA Intergenic Intergenic 20627 ENSMUSG00000022057.8 ENSMUSG00000022057 ENSMUST00000022641 Adamdec1 protein_coding Interval_85776 chr19 30919117 30919477 + 0 NA intron (ENSMUSG00000052920.16, intron 4 of 17) protein_coding-intron (ENSMUSG00000052920.16, intron 4 of 17) -163540 ENSMUSG00000053536.7 ENSMUSG00000053536 ENSMUST00000066039 Cstf2t protein_coding Interval_169246 chr9 95805020 95806221 + 0 NA intron (ENSMUSG00000049493.13, intron 1 of 15) protein_coding-intron (ENSMUSG00000049493.13, intron 1 of 15) 39691 ENSMUSG00000049493.13 ENSMUSG00000049493 ENSMUST00000135816 Pls1 protein_coding Interval_47079 chr13 75461200 75461503 + 0 NA Intergenic Intergenic 18036 ENSMUSG00000113821.1 ENSMUSG00000113821 ENSMUST00000221326 Gm48234 processed_pseudogene Interval_82651 chr18 75641319 75642263 + 0 NA intron (ENSMUSG00000052928.9, intron 1 of 11) protein_coding-intron (ENSMUSG00000052928.9, intron 1 of 11) -4518 ENSMUSG00000052928.9 ENSMUSG00000052928 ENSMUST00000235147 Ctif protein_coding Interval_136370 chr6 53871766 53872142 + 0 NA TTS (ENSMUSG00000094527.1) snoRNA-TTS (ENSMUSG00000094527.1) 194 ENSMUSG00000094527.1 ENSMUSG00000094527 ENSMUST00000178568 Gm22910 snoRNA Interval_139662 chr6 106329123 106330020 + 0 NA intron (ENSMUSG00000064293.14, intron 3 of 3) protein_coding-intron (ENSMUSG00000064293.14, intron 2 of 15) -325932 ENSMUSG00000064293.14 ENSMUSG00000064293 ENSMUST00000142626 Cntn4 protein_coding Interval_81805 chr18 64906102 64906417 + 0 NA intron (ENSMUSG00000024589.18, intron 1 of 30) protein_coding-intron (ENSMUSG00000024589.18, intron 1 of 29) -17768 ENSMUSG00000114210.2 ENSMUSG00000114210 ENSMUST00000224731 A330084C13Rik antisense Interval_157471 chr8 70569945 70570588 + 0 NA intron (ENSMUSG00000070002.7, intron 1 of 11) protein_coding-intron (ENSMUSG00000070002.7, intron 1 of 11) -25701 ENSMUSG00000019139.10 ENSMUSG00000019139 ENSMUST00000211773 Isyna1 protein_coding Interval_47937 chr13 94498624 94499704 + 0 NA intron (ENSMUSG00000021686.6, intron 5 of 11) protein_coding-intron (ENSMUSG00000021686.6, intron 21 of 26) -17998 ENSMUSG00000084423.1 ENSMUSG00000084423 ENSMUST00000122474 Gm25109 miRNA Interval_28310 chr11 75117174 75117653 + 0 NA intron (ENSMUSG00000038290.15, intron 4 of 4) protein_coding-intron (ENSMUSG00000038290.15, intron 13 of 18) -42220 ENSMUSG00000038290.15 ENSMUSG00000038290 ENSMUST00000153226 Smg6 protein_coding Interval_4757 chr1 78419493 78420792 + 0 NA exon (ENSMUSG00000032908.9, exon 5 of 5) protein_coding-exon (ENSMUSG00000032908.9, exon 5 of 5) -13210 ENSMUSG00000101798.1 ENSMUSG00000101798 ENSMUST00000186625 Gm28995 unprocessed_pseudogene Interval_66284 chr16 32859006 32859260 + 0 NA intron (ENSMUSG00000035629.19, intron 1 of 18) protein_coding-intron (ENSMUSG00000035629.19, intron 1 of 18) -18674 ENSMUSG00000022800.14 ENSMUSG00000022800 ENSMUST00000127493 Fyttd1 protein_coding Interval_125885 chr5 75387681 75388800 + 0 NA exon (ENSMUSG00000107386.1, exon 3 of 4) lincRNA-exon (ENSMUSG00000107386.1, exon 3 of 4) 11132 ENSMUSG00000107386.1 ENSMUSG00000107386 ENSMUST00000202494 Gm42800 lincRNA Interval_64058 chr16 6841656 6843061 + 0 NA intron (ENSMUSG00000008658.16, intron 4 of 11) protein_coding-intron (ENSMUSG00000008658.16, intron 3 of 14) -351389 ENSMUSG00000008658.16 ENSMUSG00000008658 ENSMUST00000231031 Rbfox1 protein_coding Interval_64230 chr16 9363984 9364521 + 0 NA Intergenic Intergenic 205482 ENSMUSG00000116123.1 ENSMUSG00000116123 ENSMUST00000229655 Gm49451 lincRNA Interval_107513 chr3 108237628 108237954 + 0 NA intron (ENSMUSG00000105961.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000105961.1, intron 1 of 2) 2120 ENSMUSG00000083462.1 ENSMUSG00000083462 ENSMUST00000119163 Gm12501 processed_pseudogene Interval_159201 chr8 91625546 91626746 + 0 NA intron (ENSMUSG00000090778.1, intron 1 of 1) protein_coding-intron (ENSMUSG00000055932.15, intron 8 of 8) 3583 ENSMUSG00000090778.1 ENSMUSG00000090778 ENSMUST00000168442 Gm3235 antisense Interval_58259 chr15 31449710 31450151 + 0 NA intron (ENSMUSG00000022236.10, intron 2 of 4) protein_coding-intron (ENSMUSG00000022236.10, intron 2 of 4) -3113 ENSMUSG00000068964.5 ENSMUSG00000068964 ENSMUST00000091031 Gm6361 processed_pseudogene Interval_129650 chr5 121533472 121535030 + 0 NA TTS (ENSMUSG00000029454.15) protein_coding-TTS (ENSMUSG00000029454.15) -3356 ENSMUSG00000082265.1 ENSMUSG00000082265 ENSMUST00000122152 Gm15547 processed_pseudogene Interval_12471 chr1 193770815 193771463 + 0 NA Intergenic Intergenic -95870 ENSMUSG00000104182.1 ENSMUSG00000104182 ENSMUST00000194272 Gm21362 processed_pseudogene Interval_46374 chr13 64319650 64320375 + 0 NA Intergenic Intergenic 2906 ENSMUSG00000118556.1 ENSMUSG00000118556 ENSMUST00000238814 CT030159.1 processed_pseudogene Interval_166580 chr9 61054440 61055103 + 0 NA intron (ENSMUSG00000111180.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000111147.1, intron 3 of 6) 898 ENSMUSG00000111180.1 ENSMUSG00000111180 ENSMUST00000216861 Gm39348 lincRNA Interval_19351 chr10 97436620 97437305 + 0 NA Intergenic Intergenic 13484 ENSMUSG00000105557.1 ENSMUSG00000105557 ENSMUST00000198473 Mir3966 miRNA Interval_127919 chr5 109072129 109072472 + 0 NA Intergenic Intergenic -12731 ENSMUSG00000091450.2 ENSMUSG00000091450 ENSMUST00000233894 Vmn2r11 protein_coding Interval_64879 chr16 16926609 16927253 + 0 NA exon (ENSMUSG00000026181.13, exon 8 of 8) protein_coding-exon (ENSMUSG00000026181.13, exon 8 of 8) -5930 ENSMUSG00000116703.1 ENSMUSG00000116703 ENSMUST00000231540 Gm46540 processed_pseudogene Interval_21772 chr11 4261052 4262147 + 0 NA intron (ENSMUSG00000034394.14, intron 1 of 3) protein_coding-intron (ENSMUSG00000034394.14, intron 1 of 3) -5197 ENSMUSG00000034394.14 ENSMUSG00000034394 ENSMUST00000040750 Lif protein_coding Interval_44915 chr13 49725051 49726222 + 0 NA intron (ENSMUSG00000037851.13, intron 27 of 33) protein_coding-intron (ENSMUSG00000037851.13, intron 27 of 33) 11517 ENSMUSG00000077360.1 ENSMUSG00000077360 ENSMUST00000104172 Gm23482 snoRNA Interval_139112 chr6 95303354 95303633 + 0 NA intron (ENSMUSG00000068180.13, intron 2 of 3) lincRNA-intron (ENSMUSG00000068180.13, intron 2 of 4) -18619 ENSMUSG00000068181.1 ENSMUSG00000068181 ENSMUST00000089304 Gm10234 protein_coding Interval_103982 chr3 56124518 56125176 + 0 NA exon (ENSMUSG00000106211.1, exon 1 of 1) TEC-exon (ENSMUSG00000106211.1, exon 1 of 1) 1312 ENSMUSG00000106211.1 ENSMUSG00000106211 ENSMUST00000197736 Gm42842 TEC Interval_21573 chr10 130115772 130117476 + 0 NA Intergenic Intergenic -1241 ENSMUSG00000096747.2 ENSMUSG00000096747 ENSMUST00000081469 Olfr823 protein_coding Interval_123142 chr5 30072632 30073901 + 0 NA intron (ENSMUSG00000025747.12, intron 1 of 4) protein_coding-intron (ENSMUSG00000025747.12, intron 1 of 6) 310 ENSMUSG00000025747.12 ENSMUSG00000025747 ENSMUST00000138520 Tyms protein_coding Interval_161819 chr8 122991651 122992092 + 0 NA intron (ENSMUSG00000035569.17, intron 1 of 2) protein_coding-intron (ENSMUSG00000035569.17, intron 1 of 12) -8928 ENSMUSG00000065915.1 ENSMUSG00000065915 ENSMUST00000083981 Gm24445 snRNA Interval_122842 chr5 26011503 26011941 + 0 NA Intergenic Intergenic 4695 ENSMUSG00000090671.1 ENSMUSG00000090671 ENSMUST00000170449 Gm5067 processed_pseudogene Interval_134141 chr6 21794209 21795577 + 0 NA TTS (ENSMUSG00000029669.14) protein_coding-TTS (ENSMUSG00000029669.14) 56935 ENSMUSG00000029669.14 ENSMUSG00000029669 ENSMUST00000202353 Tspan12 protein_coding Interval_80616 chr18 44619561 44620518 + 0 NA intron (ENSMUSG00000071856.10, intron 3 of 18) protein_coding-intron (ENSMUSG00000071856.10, intron 3 of 18) -42064 ENSMUSG00000097610.2 ENSMUSG00000097610 ENSMUST00000202771 A930012L18Rik antisense Interval_71539 chr17 24441057 24441996 + 0 NA TTS (ENSMUSG00000024136.14) protein_coding-TTS (ENSMUSG00000024136.14) 1175 ENSMUSG00000024136.14 ENSMUSG00000024136 ENSMUST00000148820 Dnase1l2 protein_coding Interval_158660 chr8 85007502 85008104 + 0 NA exon (ENSMUSG00000052819.6, exon 10 of 10) protein_coding-exon (ENSMUSG00000052819.6, exon 10 of 10) 6728 ENSMUSG00000052819.6 ENSMUSG00000052819 ENSMUST00000209421 Best2 protein_coding Interval_74308 chr17 48732044 48732665 + 0 NA intron (ENSMUSG00000110276.1, intron 4 of 4) lincRNA-intron (ENSMUSG00000110276.1, intron 4 of 4) 6392 ENSMUSG00000110276.1 ENSMUSG00000110276 ENSMUST00000209681 Gm45330 lincRNA Interval_164978 chr9 43582049 43582328 + 0 NA Intergenic Intergenic -25996 ENSMUSG00000110988.1 ENSMUSG00000110988 ENSMUST00000214500 Gm29909 lincRNA Interval_54706 chr14 73484800 73485009 + 0 NA Intergenic Intergenic -8189 ENSMUSG00000115530.1 ENSMUSG00000115530 ENSMUST00000226353 Gm4266 processed_pseudogene Interval_23195 chr11 20466351 20467480 + 0 NA Intergenic Intergenic 20503 ENSMUSG00000083878.3 ENSMUSG00000083878 ENSMUST00000119032 Gm12034 processed_pseudogene Interval_159321 chr8 93498753 93499843 + 0 NA TTS (ENSMUSG00000058019.13) protein_coding-TTS (ENSMUSG00000058019.13) -12551 ENSMUSG00000118579.1 ENSMUSG00000118579 ENSMUST00000239350 AC162945.1 unprocessed_pseudogene Interval_4062 chr1 67014665 67014961 + 0 NA intron (ENSMUSG00000026000.16, intron 4 of 4) protein_coding-intron (ENSMUSG00000026000.16, intron 4 of 9) 7405 ENSMUSG00000026000.16 ENSMUSG00000026000 ENSMUST00000189210 Lancl1 protein_coding Interval_46479 chr13 66465477 66467278 + 0 NA Intergenic Intergenic -11023 ENSMUSG00000114343.1 ENSMUSG00000114343 ENSMUST00000225113 Gm48322 processed_pseudogene Interval_167579 chr9 70602246 70602490 + 0 NA exon (ENSMUSG00000042444.10, exon 9 of 9) protein_coding-exon (ENSMUSG00000042444.10, exon 9 of 9) -53883 ENSMUSG00000074213.3 ENSMUSG00000074213 ENSMUST00000238671 Gm10642 antisense Interval_52412 chr14 45763891 45764854 + 0 NA intron (ENSMUSG00000085866.1, intron 1 of 3) lincRNA-intron (ENSMUSG00000085866.1, intron 1 of 3) 9683 ENSMUSG00000085866.1 ENSMUSG00000085866 ENSMUST00000131006 Gm15218 lincRNA Interval_120061 chr4 141591221 141592171 + 0 NA intron (ENSMUSG00000006219.12, intron 3 of 4) protein_coding-intron (ENSMUSG00000006219.12, intron 3 of 8) 14400 ENSMUSG00000006219.12 ENSMUSG00000006219 ENSMUST00000133874 Fblim1 protein_coding Interval_112909 chr4 45952216 45952511 + 0 NA Intergenic Intergenic 62060 ENSMUSG00000035539.14 ENSMUSG00000035539 ENSMUST00000151024 Ccdc180 protein_coding Interval_79422 chr18 31803558 31804736 + 0 NA promoter-TSS (ENSMUSG00000024400.16) protein_coding-promoter-TSS (ENSMUSG00000024400.16) 54 ENSMUSG00000024400.16 ENSMUSG00000024400 ENSMUST00000234937 Wdr33 protein_coding Interval_15651 chr10 52984297 52984513 + 0 NA intron (ENSMUSG00000038602.7, intron 2 of 7) protein_coding-intron (ENSMUSG00000038602.7, intron 2 of 7) 78767 ENSMUSG00000088322.1 ENSMUSG00000088322 ENSMUST00000157697 Gm25664 snRNA Interval_140875 chr6 122513124 122514556 + 0 NA intron (ENSMUSG00000030116.14, intron 1 of 9) protein_coding-intron (ENSMUSG00000030116.14, intron 1 of 8) 257 ENSMUSG00000030116.14 ENSMUSG00000030116 ENSMUST00000126357 Mfap5 protein_coding Interval_79697 chr18 34589246 34589462 + 0 NA intron (ENSMUSG00000049357.11, intron 2 of 6) protein_coding-intron (ENSMUSG00000049357.11, intron 2 of 5) 7991 ENSMUSG00000049357.11 ENSMUSG00000049357 ENSMUST00000129566 Brd8dc protein_coding Interval_2649 chr1 42915200 42915391 + 0 NA Intergenic Intergenic 12238 ENSMUSG00000060679.14 ENSMUSG00000060679 ENSMUST00000202358 Mrps9 protein_coding Interval_51319 chr14 26378936 26379430 + 0 NA intron (ENSMUSG00000021874.12, intron 4 of 6) lincRNA-intron (ENSMUSG00000021874.12, intron 4 of 7) -3011 ENSMUSG00000089978.1 ENSMUSG00000089978 ENSMUST00000160441 Crb1-ps processed_pseudogene Interval_93221 chr2 71278645 71279564 + 0 NA TTS (ENSMUSG00000027010.16) protein_coding-TTS (ENSMUSG00000027010.16) -40679 ENSMUSG00000082190.1 ENSMUSG00000082190 ENSMUST00000117993 Gm13641 processed_pseudogene Interval_33847 chr11 118964555 118965714 + 0 NA Intergenic Intergenic -23082 ENSMUSG00000046697.17 ENSMUSG00000046697 ENSMUST00000106273 Enpp7 protein_coding Interval_113565 chr4 56739482 56741397 + 0 NA exon (ENSMUSG00000070980.4, exon 1 of 1) protein_coding-exon (ENSMUSG00000070980.4, exon 1 of 1) 369 ENSMUSG00000096930.1 ENSMUSG00000096930 ENSMUST00000181745 Gm26657 protein_coding Interval_139840 chr6 110676258 110676448 + 0 NA intron (ENSMUSG00000056755.13, intron 1 of 9) protein_coding-intron (ENSMUSG00000056755.13, intron 1 of 10) -30437 ENSMUSG00000092448.1 ENSMUSG00000092448 ENSMUST00000173609 Gm20387 antisense Interval_156178 chr8 45621709 45622234 + 0 NA intron (ENSMUSG00000031626.18, intron 1 of 23) protein_coding-intron (ENSMUSG00000031626.18, intron 1 of 25) -16831 ENSMUSG00000084954.2 ENSMUSG00000084954 ENSMUST00000142008 Gm16351 antisense Interval_82743 chr18 76339253 76339613 + 0 NA Intergenic Intergenic 17609 ENSMUSG00000117816.1 ENSMUSG00000117816 ENSMUST00000235901 Gm50360 processed_pseudogene Interval_33591 chr11 117394326 117395152 + 0 NA Intergenic Intergenic -19650 ENSMUSG00000086588.1 ENSMUSG00000086588 ENSMUST00000124901 Gm11729 lincRNA Interval_60970 chr15 78377707 78378441 + 0 NA TTS (ENSMUSG00000062154.14) protein_coding-TTS (ENSMUSG00000062154.14) 8826 ENSMUSG00000070235.1 ENSMUSG00000070235 ENSMUST00000093723 Gm26329 misc_RNA Interval_80038 chr18 36802968 36803476 + 0 NA Intergenic Intergenic 1356 ENSMUSG00000065145.1 ENSMUSG00000065145 ENSMUST00000083211 Vaultrc5 misc_RNA Interval_33011 chr11 113658954 113661123 + 0 NA intron (ENSMUSG00000018661.17, intron 2 of 4) protein_coding-intron (ENSMUSG00000018661.17, intron 11 of 13) 1460 ENSMUSG00000018661.17 ENSMUSG00000018661 ENSMUST00000137878 Cog1 protein_coding Interval_77786 chr18 3489909 3491208 + 0 NA Intergenic Intergenic 6340 ENSMUSG00000117469.1 ENSMUSG00000117469 ENSMUST00000234804 Gm50089 processed_pseudogene Interval_58465 chr15 34887828 34888188 + 0 NA intron (ENSMUSG00000022329.15, intron 10 of 10) protein_coding-intron (ENSMUSG00000022329.15, intron 10 of 10) 49959 ENSMUSG00000050963.7 ENSMUSG00000050963 ENSMUST00000228725 Kcns2 protein_coding Interval_33196 chr11 115153586 115154612 + 0 NA promoter-TSS (ENSMUSG00000020732.13) protein_coding-promoter-TSS (ENSMUSG00000020732.13) -104 ENSMUSG00000020732.13 ENSMUSG00000020732 ENSMUST00000156383 Rab37 protein_coding Interval_97357 chr2 135356087 135356465 + 0 NA intron (ENSMUSG00000051177.16, intron 23 of 32) protein_coding-intron (ENSMUSG00000051177.16, intron 23 of 31) -140660 ENSMUSG00000085247.1 ENSMUSG00000085247 ENSMUST00000138303 4930545L23Rik antisense Interval_31510 chr11 101094848 101096076 + 0 NA promoter-TSS (ENSMUSG00000019303.14) protein_coding-promoter-TSS (ENSMUSG00000019303.14) -86 ENSMUSG00000019303.14 ENSMUSG00000019303 ENSMUST00000142545 Psmc3ip protein_coding Interval_167238 chr9 66514031 66514606 + 0 NA TTS (ENSMUSG00000032376.12) protein_coding-TTS (ENSMUSG00000032376.12) 291 ENSMUSG00000050503.9 ENSMUSG00000050503 ENSMUST00000056890 Fbxl22 protein_coding Interval_78223 chr18 10311156 10312018 + 0 NA Intergenic Intergenic -3767 ENSMUSG00000117363.1 ENSMUSG00000117363 ENSMUST00000234780 Gm50033 TEC Interval_43886 chr13 37846101 37848064 + 0 NA intron (ENSMUSG00000039087.17, intron 1 of 9) protein_coding-intron (ENSMUSG00000039087.17, intron 1 of 9) -47292 ENSMUSG00000114370.1 ENSMUSG00000114370 ENSMUST00000224624 Gm46411 antisense Interval_156834 chr8 60950052 60950358 + 0 NA intron (ENSMUSG00000004319.15, intron 1 of 11) protein_coding-intron (ENSMUSG00000004319.15, intron 2 of 13) 33039 ENSMUSG00000004319.15 ENSMUSG00000004319 ENSMUST00000145493 Clcn3 protein_coding Interval_126822 chr5 93170282 93171009 + 0 NA TTS (ENSMUSG00000058013.11) protein_coding-TTS (ENSMUSG00000058013.11) -6325 ENSMUSG00000107019.1 ENSMUSG00000107019 ENSMUST00000202150 Gm43682 TEC Interval_127792 chr5 107868402 107869392 + 0 NA promoter-TSS (ENSMUSG00000011831.16) protein_coding-promoter-TSS (ENSMUSG00000011831.16) 423 ENSMUSG00000104748.1 ENSMUSG00000104748 ENSMUST00000196922 Gm43592 TEC Interval_130129 chr5 124452701 124453640 + 0 NA intron (ENSMUSG00000049327.17, intron 4 of 6) protein_coding-intron (ENSMUSG00000049327.17, intron 5 of 7) 13203 ENSMUSG00000049327.17 ENSMUSG00000049327 ENSMUST00000125588 Kmt5a protein_coding Interval_49681 chr13 113972928 113973963 + 0 NA intron (ENSMUSG00000042348.10, intron 5 of 5) protein_coding-intron (ENSMUSG00000042348.10, intron 4 of 4) 146971 ENSMUSG00000114696.1 ENSMUSG00000114696 ENSMUST00000223997 Gm47479 TEC Interval_51663 chr14 31215180 31216164 + 0 NA intron (ENSMUSG00000021910.15, intron 1 of 3) protein_coding-intron (ENSMUSG00000021910.15, intron 1 of 3) -2188 ENSMUSG00000021904.6 ENSMUSG00000021904 ENSMUST00000090180 Sema3g protein_coding Interval_24576 chr11 34760556 34760822 + 0 NA intron (ENSMUSG00000020143.15, intron 1 of 26) protein_coding-intron (ENSMUSG00000020143.15, intron 1 of 51) 63262 ENSMUSG00000069910.2 ENSMUSG00000069910 ENSMUST00000148387 Spdl1 protein_coding Interval_105130 chr3 82109004 82109286 + 0 NA exon (ENSMUSG00000033910.13, exon 5 of 9) protein_coding-exon (ENSMUSG00000033910.13, exon 5 of 9) -2836 ENSMUSG00000098712.1 ENSMUSG00000098712 ENSMUST00000183464 Mir7010 miRNA Interval_68127 chr16 65496728 65497561 + 0 NA Intergenic Intergenic -26133 ENSMUSG00000004842.18 ENSMUSG00000004842 ENSMUST00000184525 Pou1f1 protein_coding Interval_52094 chr14 35737661 35737982 + 0 NA Intergenic Intergenic 74157 ENSMUSG00000041068.6 ENSMUSG00000041068 ENSMUST00000043266 4930596D02Rik protein_coding Interval_93363 chr2 72423255 72423737 + 0 NA intron (ENSMUSG00000004085.14, intron 16 of 19) protein_coding-intron (ENSMUSG00000004085.14, intron 16 of 19) -52757 ENSMUSG00000055612.15 ENSMUSG00000055612 ENSMUST00000137880 Cdca7 protein_coding Interval_88614 chr2 6742670 6742880 + 0 NA intron (ENSMUSG00000002107.18, intron 2 of 13) protein_coding-intron (ENSMUSG00000002107.18, intron 3 of 15) 129822 ENSMUSG00000002107.18 ENSMUSG00000002107 ENSMUST00000182037 Celf2 protein_coding Interval_51513 chr14 29269555 29270421 + 0 NA promoter-TSS (ENSMUSG00000114758.1) processed_pseudogene-promoter-TSS (ENSMUSG00000114758.1) -299 ENSMUSG00000114758.1 ENSMUSG00000114758 ENSMUST00000225833 Gm48005 processed_pseudogene Interval_64262 chr16 10001665 10002423 + 0 NA Intergenic Intergenic -7121 ENSMUSG00000059003.12 ENSMUSG00000059003 ENSMUST00000197242 Grin2a protein_coding Interval_58653 chr15 36842448 36843661 + 0 NA intron (ENSMUSG00000115750.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000115750.1, intron 1 of 1) 238 ENSMUSG00000115750.1 ENSMUSG00000115750 ENSMUST00000226620 Gm49282 lincRNA Interval_37355 chr12 65404183 65404444 + 0 NA Intergenic Intergenic 1657 ENSMUSG00000077590.1 ENSMUSG00000077590 ENSMUST00000104402 Gm26015 snoRNA Interval_49662 chr13 113855711 113856210 + 0 NA intron (ENSMUSG00000042348.10, intron 1 of 3) protein_coding-intron (ENSMUSG00000042348.10, intron 1 of 4) 61367 ENSMUSG00000042348.10 ENSMUSG00000042348 ENSMUST00000224068 Arl15 protein_coding Interval_139346 chr6 99200836 99201576 + 0 NA intron (ENSMUSG00000030067.17, intron 4 of 4) protein_coding-intron (ENSMUSG00000030067.17, intron 2 of 3) -125149 ENSMUSG00000105902.1 ENSMUSG00000105902 ENSMUST00000200105 Gm49348 miRNA Interval_39405 chr12 87205597 87207215 + 0 NA intron (ENSMUSG00000090812.8, intron 2 of 2) protein_coding-intron (ENSMUSG00000090812.8, intron 2 of 3) -5952 ENSMUSG00000034111.6 ENSMUSG00000034111 ENSMUST00000037418 Tmed8 protein_coding Interval_63204 chr15 99723304 99726134 + 0 NA promoter-TSS (ENSMUSG00000023020.3) protein_coding-promoter-TSS (ENSMUSG00000023020.3) -245 ENSMUSG00000089671.1 ENSMUSG00000089671 ENSMUST00000161529 Gm16537 antisense Interval_80333 chr18 39358489 39359978 + 0 NA intron (ENSMUSG00000036452.18, intron 3 of 4) protein_coding-intron (ENSMUSG00000036452.18, intron 21 of 22) -17269 ENSMUSG00000082287.1 ENSMUSG00000082287 ENSMUST00000118825 Gm15333 processed_pseudogene Interval_150063 chr7 105527358 105527950 + 0 NA Intergenic Intergenic -28037 ENSMUSG00000037049.9 ENSMUSG00000037049 ENSMUST00000211307 Smpd1 protein_coding Interval_150571 chr7 112534101 112534366 + 0 NA intron (ENSMUSG00000085049.1, intron 3 of 4) protein_coding-intron (ENSMUSG00000030770.15, intron 1 of 12) 1450 ENSMUSG00000085049.1 ENSMUSG00000085049 ENSMUST00000154848 Parvaos antisense Interval_139440 chr6 100203087 100204036 + 0 NA Intergenic Intergenic -44571 ENSMUSG00000108269.1 ENSMUSG00000108269 ENSMUST00000203798 Gm18422 transcribed_processed_pseudogene Interval_158629 chr8 84856547 84857501 + 0 NA promoter-TSS (ENSMUSG00000003808.18) protein_coding-promoter-TSS (ENSMUSG00000003808.18) 4 ENSMUSG00000003808.18 ENSMUSG00000003808 ENSMUST00000141480 Farsa protein_coding Interval_2952 chr1 51579786 51580047 + 0 NA intron (ENSMUSG00000099413.1, intron 3 of 3) lincRNA-intron (ENSMUSG00000099413.1, intron 3 of 3) -50547 ENSMUSG00000103424.1 ENSMUSG00000103424 ENSMUST00000194442 Gm37535 TEC Interval_96914 chr2 129433654 129433875 + 0 NA Intergenic Intergenic -54368 ENSMUSG00000081888.1 ENSMUSG00000081888 ENSMUST00000122326 Spcs2-ps unprocessed_pseudogene Interval_17746 chr10 79872879 79875208 + 0 NA promoter-TSS (ENSMUSG00000057729.12) protein_coding-promoter-TSS (ENSMUSG00000057729.12) -6762 ENSMUSG00000035835.14 ENSMUSG00000035835 ENSMUST00000166023 Plppr3 protein_coding Interval_91391 chr2 38501728 38502688 + 0 NA exon (ENSMUSG00000107883.1, exon 1 of 1) TEC-exon (ENSMUSG00000107883.1, exon 1 of 1) 2016 ENSMUSG00000107883.1 ENSMUSG00000107883 ENSMUST00000203312 Gm44062 TEC Interval_20320 chr10 116871606 116872415 + 0 NA intron (ENSMUSG00000034057.8, intron 1 of 24) protein_coding-intron (ENSMUSG00000034057.8, intron 1 of 24) 24909 ENSMUSG00000034057.8 ENSMUSG00000034057 ENSMUST00000048229 Myrfl protein_coding Interval_67589 chr16 51677384 51677625 + 0 NA Intergenic Intergenic -260556 ENSMUSG00000116855.1 ENSMUSG00000116855 ENSMUST00000232313 Gm49608 processed_pseudogene Interval_91514 chr2 40310703 40311072 + 0 NA Intergenic Intergenic 12370 ENSMUSG00000088512.1 ENSMUSG00000088512 ENSMUST00000157887 Gm24467 snoRNA Interval_25636 chr11 50325116 50326301 + 0 NA promoter-TSS (ENSMUSG00000020368.15) protein_coding-promoter-TSS (ENSMUSG00000020368.15) -35 ENSMUSG00000020368.15 ENSMUSG00000020368 ENSMUST00000155801 Canx protein_coding Interval_46802 chr13 70743392 70743855 + 0 NA intron (ENSMUSG00000049538.14, intron 18 of 22) protein_coding-intron (ENSMUSG00000049538.14, intron 18 of 22) 37390 ENSMUSG00000113794.1 ENSMUSG00000113794 ENSMUST00000222750 Gm36607 antisense Interval_149292 chr7 97042728 97043490 + 0 NA intron (ENSMUSG00000018995.12, intron 1 of 3) protein_coding-intron (ENSMUSG00000018995.12, intron 11 of 13) 5508 ENSMUSG00000018995.12 ENSMUSG00000018995 ENSMUST00000150681 Nars2 protein_coding Interval_38965 chr12 84163055 84164076 + 0 NA intron (ENSMUSG00000042507.15, intron 3 of 12) protein_coding-intron (ENSMUSG00000042507.15, intron 3 of 12) -15076 ENSMUSG00000054383.2 ENSMUSG00000054383 ENSMUST00000061425 Pnma1 protein_coding Interval_8968 chr1 152807682 152808165 + 0 NA promoter-TSS (ENSMUSG00000026480.12) protein_coding-promoter-TSS (ENSMUSG00000026480.12) 86 ENSMUSG00000026480.12 ENSMUSG00000026480 ENSMUST00000187235 Ncf2 protein_coding Interval_166224 chr9 57605920 57606970 + 0 NA promoter-TSS (ENSMUSG00000039714.9) protein_coding-promoter-TSS (ENSMUSG00000039714.9) -1367 ENSMUSG00000039714.9 ENSMUSG00000039714 ENSMUST00000215487 Cplx3 protein_coding Interval_29610 chr11 85361517 85362446 + 0 NA intron (ENSMUSG00000059439.15, intron 4 of 5) protein_coding-intron (ENSMUSG00000059439.15, intron 3 of 24) 49817 ENSMUSG00000020525.17 ENSMUSG00000020525 ENSMUST00000127717 Ppm1d protein_coding Interval_173686 chrX 101942219 101943113 + 0 NA intron (ENSMUSG00000079481.11, intron 1 of 7) protein_coding-intron (ENSMUSG00000079481.11, intron 1 of 7) -19131 ENSMUSG00000079481.11 ENSMUSG00000079481 ENSMUST00000129185 Nhsl2 protein_coding Interval_163834 chr9 27009828 27010841 + 0 NA TTS (ENSMUSG00000031988.10) protein_coding-TTS (ENSMUSG00000031988.10) 7274 ENSMUSG00000035443.10 ENSMUSG00000035443 ENSMUST00000216361 Thyn1 protein_coding Interval_20608 chr10 119423445 119424101 + 0 NA intron (ENSMUSG00000100558.1, intron 3 of 3) lincRNA-intron (ENSMUSG00000100558.1, intron 3 of 3) 10329 ENSMUSG00000100558.1 ENSMUSG00000100558 ENSMUST00000185238 1700025F24Rik lincRNA Interval_78413 chr18 12653891 12654365 + 0 NA intron (ENSMUSG00000024424.15, intron 1 of 13) protein_coding-intron (ENSMUSG00000024424.15, intron 1 of 13) -5709 ENSMUSG00000117573.1 ENSMUSG00000117573 ENSMUST00000234607 Gm41668 antisense Interval_21766 chr11 4229666 4230363 + 0 NA TTS (ENSMUSG00000084012.1) processed_pseudogene-TTS (ENSMUSG00000084012.1) 1251 ENSMUSG00000084012.1 ENSMUSG00000084012 ENSMUST00000119525 Gm11956 processed_pseudogene Interval_37536 chr12 69661744 69662278 + 0 NA intron (ENSMUSG00000034801.13, intron 1 of 22) protein_coding-intron (ENSMUSG00000034801.13, intron 1 of 22) -44892 ENSMUSG00000034801.13 ENSMUSG00000034801 ENSMUST00000183306 Sos2 protein_coding Interval_98809 chr2 155168122 155168362 + 0 NA intron (ENSMUSG00000027598.16, intron 4 of 6) protein_coding-intron (ENSMUSG00000027598.16, intron 3 of 24) 31018 ENSMUSG00000082596.1 ENSMUSG00000082596 ENSMUST00000119431 Gm14227 processed_pseudogene Interval_29146 chr11 80656343 80656972 + 0 NA intron (ENSMUSG00000035441.14, intron 14 of 20) protein_coding-intron (ENSMUSG00000035441.14, intron 14 of 21) 123346 ENSMUSG00000035441.14 ENSMUSG00000035441 ENSMUST00000125944 Myo1d protein_coding Interval_94673 chr2 93198815 93200148 + 0 NA TTS (ENSMUSG00000068735.14) protein_coding-TTS (ENSMUSG00000068735.14) 11933 ENSMUSG00000068735.14 ENSMUSG00000068735 ENSMUST00000143164 Trp53i11 protein_coding Interval_132577 chr5 146420221 146420518 + 0 NA intron (ENSMUSG00000029636.11, intron 1 of 9) protein_coding-intron (ENSMUSG00000029636.11, intron 1 of 9) -35240 ENSMUSG00000029636.11 ENSMUSG00000029636 ENSMUST00000238592 Wasf3 protein_coding Interval_51281 chr14 25724935 25725122 + 0 NA intron (ENSMUSG00000055538.7, intron 2 of 3) protein_coding-intron (ENSMUSG00000055538.7, intron 2 of 3) -5236 ENSMUSG00000055538.7 ENSMUSG00000055538 ENSMUST00000184642 Zcchc24 protein_coding Interval_169427 chr9 97161959 97162886 + 0 NA Intergenic Intergenic -16757 ENSMUSG00000101502.1 ENSMUSG00000101502 ENSMUST00000190579 Rpl7a-ps10 processed_pseudogene Interval_85681 chr19 29647594 29648727 + 0 NA promoter-TSS (ENSMUSG00000046324.12) protein_coding-promoter-TSS (ENSMUSG00000046324.12) -2133 ENSMUSG00000046324.12 ENSMUSG00000046324 ENSMUST00000160907 Ermp1 protein_coding Interval_39677 chr12 92095338 92095709 + 0 NA Intergenic Intergenic 65916 ENSMUSG00000113643.1 ENSMUSG00000113643 ENSMUST00000222953 Gm40598 processed_pseudogene Interval_142156 chr6 137694529 137694729 + 0 NA Intergenic Intergenic -50411 ENSMUSG00000030224.10 ENSMUSG00000030224 ENSMUST00000137235 Strap protein_coding Interval_12038 chr1 189006386 189008189 + 0 NA intron (ENSMUSG00000026608.13, intron 1 of 12) protein_coding-intron (ENSMUSG00000026608.13, intron 1 of 17) 554 ENSMUSG00000026608.13 ENSMUSG00000026608 ENSMUST00000193273 Kctd3 protein_coding Interval_89243 chr2 18349141 18349312 + 0 NA intron (ENSMUSG00000026740.12, intron 1 of 11) protein_coding-intron (ENSMUSG00000026740.12, intron 1 of 10) -10237 ENSMUSG00000082520.2 ENSMUSG00000082520 ENSMUST00000118436 Gm13349 processed_pseudogene Interval_63545 chr15 101940678 101941400 + 0 NA promoter-TSS (ENSMUSG00000061397.8) protein_coding-promoter-TSS (ENSMUSG00000061397.8) -7052 ENSMUSG00000061397.8 ENSMUSG00000061397 ENSMUST00000230441 Krt79 protein_coding Interval_90746 chr2 32259491 32260914 + 0 NA promoter-TSS (ENSMUSG00000002550.16) protein_coding-promoter-TSS (ENSMUSG00000002550.16) -569 ENSMUSG00000002550.16 ENSMUSG00000002550 ENSMUST00000134351 Uck1 protein_coding Interval_43053 chr13 23503720 23504119 + 0 NA Intergenic Intergenic -14223 ENSMUSG00000104750.1 ENSMUSG00000104750 ENSMUST00000199903 n-TStga1 miRNA Interval_29594 chr11 85239920 85241652 + 0 NA Intergenic Intergenic -5656 ENSMUSG00000018481.9 ENSMUSG00000018481 ENSMUST00000018625 Appbp2 protein_coding Interval_107902 chr3 116697781 116698522 + 0 NA intron (ENSMUSG00000027957.13, intron 1 of 8) protein_coding-intron (ENSMUSG00000027957.13, intron 1 of 7) 14061 ENSMUSG00000027957.13 ENSMUSG00000027957 ENSMUST00000169530 Slc35a3 protein_coding Interval_139865 chr6 112091341 112091931 + 0 NA Intergenic Intergenic -3442 ENSMUSG00000107893.1 ENSMUSG00000107893 ENSMUST00000204195 Gm44192 TEC Interval_121722 chr5 5713306 5713872 + 0 NA Intergenic Intergenic 16731 ENSMUSG00000105996.1 ENSMUSG00000105996 ENSMUST00000197972 Gm43219 TEC Interval_21601 chr10 130469727 130471253 + 0 NA TTS (ENSMUSG00000091511.3) protein_coding-TTS (ENSMUSG00000091511.3) 119 ENSMUSG00000112712.1 ENSMUSG00000112712 ENSMUST00000218030 Gm18755 processed_pseudogene Interval_158693 chr8 85322233 85322946 + 0 NA Intergenic Intergenic 7449 ENSMUSG00000088344.1 ENSMUSG00000088344 ENSMUST00000157719 Gm22336 snRNA Interval_10186 chr1 166888742 166888957 + 0 NA Intergenic Intergenic 57509 ENSMUSG00000086925.1 ENSMUSG00000086925 ENSMUST00000145247 Gm6286 processed_pseudogene Interval_139497 chr6 100550822 100551407 + 0 NA Intergenic Intergenic 23714 ENSMUSG00000101553.1 ENSMUSG00000101553 ENSMUST00000187986 1700049E22Rik lincRNA Interval_15680 chr10 53462591 53463279 + 0 NA Intergenic Intergenic -12029 ENSMUSG00000056219.7 ENSMUSG00000056219 ENSMUST00000168554 Tmem229b-ps processed_pseudogene Interval_159486 chr8 95021622 95023782 + 0 NA exon (ENSMUSG00000060470.7, exon 1 of 1) protein_coding-exon (ENSMUSG00000060470.7, exon 1 of 1) 1908 ENSMUSG00000060470.7 ENSMUSG00000060470 ENSMUST00000212570 Adgrg3 protein_coding Interval_147618 chr7 70192919 70193974 + 0 NA intron (ENSMUSG00000109097.1, intron 3 of 3) lincRNA-intron (ENSMUSG00000109097.1, intron 3 of 3) -13989 ENSMUSG00000109280.1 ENSMUSG00000109280 ENSMUST00000208979 Gm35325 lincRNA Interval_129838 chr5 122661957 122662665 + 0 NA intron (ENSMUSG00000029468.17, intron 5 of 12) protein_coding-intron (ENSMUSG00000029468.17, intron 5 of 12) 11887 ENSMUSG00000029468.17 ENSMUSG00000029468 ENSMUST00000197042 P2rx7 protein_coding Interval_95284 chr2 105659314 105661159 + 0 NA exon (ENSMUSG00000102424.2, exon 1 of 1) lincRNA-exon (ENSMUSG00000102424.2, exon 1 of 1) 1107 ENSMUSG00000102424.2 ENSMUSG00000102424 ENSMUST00000194826 Paupar lincRNA Interval_87764 chr19 55718765 55719369 + 0 NA Intergenic Intergenic -23197 ENSMUSG00000024985.20 ENSMUSG00000024985 ENSMUST00000148666 Tcf7l2 protein_coding Interval_164629 chr9 40206269 40207558 + 0 NA intron (ENSMUSG00000025602.13, intron 1 of 5) protein_coding-intron (ENSMUSG00000025602.13, intron 1 of 6) 14584 ENSMUSG00000025602.13 ENSMUSG00000025602 ENSMUST00000168832 Zfp202 protein_coding Interval_83418 chr18 84996927 84998440 + 0 NA Intergenic Intergenic 15652 ENSMUSG00000118255.1 ENSMUSG00000118255 ENSMUST00000238005 Gm50369 processed_pseudogene Interval_14561 chr10 35775050 35775900 + 0 NA Intergenic Intergenic -63015 ENSMUSG00000111550.1 ENSMUSG00000111550 ENSMUST00000213846 Gm49446 lincRNA Interval_140597 chr6 119933262 119934003 + 0 NA exon (ENSMUSG00000045962.16, exon 1 of 1) protein_coding-intron (ENSMUSG00000045962.16, intron 1 of 2) 15550 ENSMUSG00000030166.14 ENSMUSG00000030166 ENSMUST00000204319 Rad52 protein_coding Interval_158520 chr8 84209957 84210708 + 0 NA TTS (ENSMUSG00000035671.6) protein_coding-TTS (ENSMUSG00000035671.6) 1412 ENSMUSG00000097296.1 ENSMUSG00000097296 ENSMUST00000180630 Gm26532 lincRNA Interval_89213 chr2 18096740 18096978 + 0 NA intron (ENSMUSG00000026743.16, intron 4 of 23) protein_coding-intron (ENSMUSG00000026743.16, intron 3 of 22) 32018 ENSMUSG00000026743.16 ENSMUSG00000026743 ENSMUST00000149786 Mllt10 protein_coding Interval_83818 chr19 4854664 4856064 + 0 NA promoter-TSS (ENSMUSG00000083282.3) protein_coding-promoter-TSS (ENSMUSG00000083282.3) -4017 ENSMUSG00000083282.3 ENSMUSG00000083282 ENSMUST00000235354 Ctsf protein_coding Interval_78776 chr18 20569914 20570396 + 0 NA intron (ENSMUSG00000044393.15, intron 1 of 6) protein_coding-intron (ENSMUSG00000044393.15, intron 1 of 14) 11909 ENSMUSG00000044393.15 ENSMUSG00000044393 ENSMUST00000121837 Dsg2 protein_coding Interval_141148 chr6 125260095 125261886 + 0 NA Intergenic Intergenic -2813 ENSMUSG00000089556.1 ENSMUSG00000089556 ENSMUST00000158931 Gm24175 snoRNA Interval_128120 chr5 111111192 111112762 + 0 NA intron (ENSMUSG00000033209.17, intron 5 of 22) protein_coding-intron (ENSMUSG00000033209.17, intron 5 of 23) -46334 ENSMUSG00000106153.1 ENSMUSG00000106153 ENSMUST00000198098 Gm43677 TEC Interval_90623 chr2 31530781 31532155 + 0 NA Intergenic Intergenic 21227 ENSMUSG00000084226.1 ENSMUSG00000084226 ENSMUST00000117887 Gm13426 processed_pseudogene Interval_120477 chr4 148859239 148860841 + 0 NA intron (ENSMUSG00000028977.17, intron 2 of 20) protein_coding-intron (ENSMUSG00000028977.17, intron 2 of 15) 54284 ENSMUSG00000086766.1 ENSMUSG00000086766 ENSMUST00000151967 Gm15969 antisense Interval_145870 chr7 40875134 40875319 + 0 NA promoter-TSS (ENSMUSG00000100600.6) antisense-promoter-TSS (ENSMUSG00000100600.6) -1317 ENSMUSG00000101643.1 ENSMUSG00000101643 ENSMUST00000190685 Gm28307 lincRNA Interval_102320 chr3 21866777 21867309 + 0 NA Intergenic Intergenic -104512 ENSMUSG00000103441.1 ENSMUSG00000103441 ENSMUST00000193217 7530428D23Rik transcribed_processed_pseudogene Interval_40970 chr12 110349347 110350651 + 0 NA Intergenic Intergenic 24614 ENSMUSG00000114183.1 ENSMUSG00000114183 ENSMUST00000222991 Gm47195 processed_pseudogene Interval_131719 chr5 139484028 139485136 + 0 NA promoter-TSS (ENSMUSG00000053581.13) protein_coding-promoter-TSS (ENSMUSG00000053581.13) -118 ENSMUSG00000053581.13 ENSMUSG00000053581 ENSMUST00000143889 Zfand2a protein_coding Interval_32631 chr11 109305503 109306133 + 0 NA Intergenic Intergenic -41021 ENSMUSG00000099630.1 ENSMUSG00000099630 ENSMUST00000190043 1700096J18Rik lincRNA Interval_25313 chr11 46254223 46255627 + 0 NA intron (ENSMUSG00000020340.16, intron 16 of 30) protein_coding-intron (ENSMUSG00000020340.16, intron 16 of 30) -10731 ENSMUSG00000081078.1 ENSMUSG00000081078 ENSMUST00000117362 Gm12568 processed_pseudogene Interval_7505 chr1 131893445 131893896 + 0 NA Intergenic Intergenic -13495 ENSMUSG00000100026.1 ENSMUSG00000100026 ENSMUST00000187256 Gm29105 unprocessed_pseudogene Interval_102412 chr3 24996562 24996985 + 0 NA intron (ENSMUSG00000102758.3, intron 1 of 2) protein_coding-intron (ENSMUSG00000102758.3, intron 1 of 2) 10932 ENSMUSG00000105009.1 ENSMUSG00000105009 ENSMUST00000198854 Gm42774 processed_pseudogene Interval_23642 chr11 24045721 24046559 + 0 NA Intergenic Intergenic 28914 ENSMUSG00000055010.1 ENSMUSG00000055010 ENSMUST00000068360 A830031A19Rik protein_coding Interval_60928 chr15 77936971 77937378 + 0 NA Intergenic Intergenic 8714 ENSMUSG00000016552.13 ENSMUSG00000016552 ENSMUST00000129045 Foxred2 protein_coding Interval_95423 chr2 109116054 109116281 + 0 NA intron (ENSMUSG00000057234.9, intron 6 of 6) protein_coding-intron (ENSMUSG00000057234.9, intron 5 of 5) 32531 ENSMUSG00000076987.1 ENSMUSG00000076987 ENSMUST00000103799 Gm24115 miRNA Interval_146822 chr7 52452312 52452578 + 0 NA Intergenic Intergenic 40992 ENSMUSG00000109099.1 ENSMUSG00000109099 ENSMUST00000208144 Gm20074 processed_pseudogene Interval_117932 chr4 127158823 127159106 + 0 NA Intergenic Intergenic -17476 ENSMUSG00000082220.3 ENSMUSG00000082220 ENSMUST00000119616 Gm12943 processed_pseudogene Interval_9991 chr1 164663890 164664323 + 0 NA intron (ENSMUSG00000102897.1, intron 2 of 3) lincRNA-intron (ENSMUSG00000102897.1, intron 2 of 3) -17876 ENSMUSG00000102761.1 ENSMUSG00000102761 ENSMUST00000194720 Gm37184 lincRNA Interval_76344 chr17 79285356 79285819 + 0 NA Intergenic Intergenic -27538 ENSMUSG00000117047.1 ENSMUSG00000117047 ENSMUST00000232946 Gm5230 processed_pseudogene Interval_117484 chr4 124072642 124074485 + 0 NA Intergenic Intergenic 147329 ENSMUSG00000082515.1 ENSMUSG00000082515 ENSMUST00000118389 Gm12902 processed_pseudogene Interval_141974 chr6 136239294 136239591 + 0 NA Intergenic Intergenic -41785 ENSMUSG00000087878.1 ENSMUSG00000087878 ENSMUST00000157253 Gm26105 snRNA Interval_59027 chr15 41840369 41840752 + 0 NA intron (ENSMUSG00000022307.16, intron 2 of 3) protein_coding-intron (ENSMUSG00000022307.16, intron 9 of 14) 9567 ENSMUSG00000022307.16 ENSMUSG00000022307 ENSMUST00000230126 Oxr1 protein_coding Interval_140029 chr6 113512518 113513229 + 0 NA Intergenic Intergenic -10986 ENSMUSG00000045009.9 ENSMUSG00000045009 ENSMUST00000205075 Prrt3 protein_coding Interval_77924 chr18 5610258 5610644 + 0 NA intron (ENSMUSG00000024238.15, intron 1 of 2) protein_coding-intron (ENSMUSG00000024238.15, intron 1 of 7) 1479 ENSMUSG00000090078.2 ENSMUSG00000090078 ENSMUST00000162143 Gm16147 processed_pseudogene Interval_118679 chr4 133155299 133157116 + 0 NA intron (ENSMUSG00000028868.13, intron 1 of 8) protein_coding-intron (ENSMUSG00000028868.13, intron 1 of 8) 15507 ENSMUSG00000089298.1 ENSMUSG00000089298 ENSMUST00000158673 Gm24636 misc_RNA Interval_137975 chr6 83879539 83881389 + 0 NA intron (ENSMUSG00000030016.14, intron 1 of 3) protein_coding-intron (ENSMUSG00000030016.14, intron 1 of 3) -5084 ENSMUSG00000079501.3 ENSMUSG00000079501 ENSMUST00000113842 Gm5138 processed_pseudogene Interval_1055 chr1 14613103 14613916 + 0 NA Intergenic Intergenic -139428 ENSMUSG00000054493.2 ENSMUSG00000054493 ENSMUST00000067599 Gm9947 antisense Interval_129492 chr5 120530914 120531721 + 0 NA intron (ENSMUSG00000032754.14, intron 14 of 14) protein_coding-intron (ENSMUSG00000032754.14, intron 15 of 15) 20047 ENSMUSG00000032754.14 ENSMUSG00000032754 ENSMUST00000123326 Slc8b1 protein_coding Interval_119057 chr4 135253497 135254680 + 0 NA intron (ENSMUSG00000037242.8, intron 1 of 2) protein_coding-intron (ENSMUSG00000037242.8, intron 1 of 5) 18726 ENSMUSG00000037242.8 ENSMUSG00000037242 ENSMUST00000143370 Clic4 protein_coding Interval_45818 chr13 58298112 58299237 + 0 NA exon (ENSMUSG00000097399.7, exon 6 of 6) antisense-exon (ENSMUSG00000097399.7, exon 6 of 6) 14475 ENSMUSG00000098258.1 ENSMUSG00000098258 ENSMUST00000183772 Mir6369 miRNA Interval_80412 chr18 41974957 41975694 + 0 NA Intergenic Intergenic 23724 ENSMUSG00000073574.4 ENSMUSG00000073574 ENSMUST00000097591 Grxcr2 protein_coding Interval_25792 chr11 51745941 51747498 + 0 NA intron (ENSMUSG00000036391.16, intron 2 of 2) protein_coding-intron (ENSMUSG00000036391.16, intron 1 of 22) -8797 ENSMUSG00000084744.1 ENSMUSG00000084744 ENSMUST00000122795 Gm25291 snoRNA Interval_128074 chr5 110706120 110706359 + 0 NA intron (ENSMUSG00000029505.17, intron 1 of 6) protein_coding-intron (ENSMUSG00000029505.17, intron 19 of 51) -14058 ENSMUSG00000077254.1 ENSMUSG00000077254 ENSMUST00000104066 Gm26079 snoRNA Interval_49735 chr13 114336581 114336790 + 0 NA intron (ENSMUSG00000021764.8, intron 1 of 3) protein_coding-intron (ENSMUSG00000021764.8, intron 2 of 4) 51365 ENSMUSG00000021764.8 ENSMUSG00000021764 ENSMUST00000225978 Ndufs4 protein_coding Interval_68109 chr16 65169954 65170284 + 0 NA promoter-TSS (ENSMUSG00000089178.1) snoRNA-promoter-TSS (ENSMUSG00000089178.1) 51 ENSMUSG00000089178.1 ENSMUSG00000089178 ENSMUST00000158553 Gm22429 snoRNA Interval_112244 chr4 38050131 38050425 + 0 NA Intergenic Intergenic 21433 ENSMUSG00000082899.1 ENSMUSG00000082899 ENSMUST00000119607 Gm12379 processed_pseudogene Interval_152666 chr7 135994847 135995063 + 0 NA Intergenic Intergenic 42157 ENSMUSG00000098031.1 ENSMUSG00000098031 ENSMUST00000183000 Gm9341 processed_pseudogene Interval_54410 chr14 68735714 68735990 + 0 NA Intergenic Intergenic 3898 ENSMUSG00000114641.1 ENSMUSG00000114641 ENSMUST00000224710 Gm46476 processed_pseudogene Interval_96489 chr2 125055498 125056478 + 0 NA Intergenic Intergenic -24367 ENSMUSG00000035183.14 ENSMUSG00000035183 ENSMUST00000149963 Slc24a5 protein_coding Interval_21451 chr10 128684908 128686723 + 0 NA intron (ENSMUSG00000000711.3, intron 2 of 3) protein_coding-intron (ENSMUSG00000000711.3, intron 2 of 5) -9166 ENSMUSG00000118400.1 ENSMUSG00000118400 ENSMUST00000238743 Gm6336 processed_pseudogene Interval_53821 chr14 62300566 62302580 + 0 NA intron (ENSMUSG00000021932.13, intron 1 of 4) protein_coding-intron (ENSMUSG00000021932.13, intron 1 of 4) -8526 ENSMUSG00000048281.9 ENSMUSG00000048281 ENSMUST00000225120 Dleu7 protein_coding Interval_111393 chr4 20360365 20360963 + 0 NA intron (ENSMUSG00000055761.14, intron 3 of 5) protein_coding-intron (ENSMUSG00000055761.14, intron 3 of 4) 16958 ENSMUSG00000086017.1 ENSMUSG00000086017 ENSMUST00000141819 Gm11872 antisense Interval_21684 chr11 3671153 3671403 + 0 NA intron (ENSMUSG00000034543.15, intron 5 of 25) protein_coding-intron (ENSMUSG00000034543.15, intron 6 of 26) -14487 ENSMUSG00000088250.1 ENSMUSG00000088250 ENSMUST00000157625 Gm26393 snRNA Interval_124278 chr5 43423004 43425415 + 0 NA Intergenic Intergenic -46483 ENSMUSG00000104691.1 ENSMUSG00000104691 ENSMUST00000198692 Gm43021 lincRNA Interval_121421 chr4 155704520 155705799 + 0 NA promoter-TSS (ENSMUSG00000029038.9) protein_coding-promoter-TSS (ENSMUSG00000029038.9) 35 ENSMUSG00000029038.9 ENSMUSG00000029038 ENSMUST00000105595 Ssu72 protein_coding Interval_75121 chr17 63661195 63662723 + 0 NA Intergenic Intergenic -34005 ENSMUSG00000117060.1 ENSMUSG00000117060 ENSMUST00000232736 Gm7253 processed_pseudogene Interval_146551 chr7 46775820 46776127 + 0 NA intron (ENSMUSG00000014418.16, intron 11 of 22) protein_coding-intron (ENSMUSG00000014418.16, intron 11 of 22) -6881 ENSMUSG00000014418.16 ENSMUSG00000014418 ENSMUST00000123725 Hps5 protein_coding Interval_151420 chr7 122242381 122242938 + 0 NA Intergenic Intergenic 7366 ENSMUSG00000108708.1 ENSMUSG00000108708 ENSMUST00000206804 Gm29977 processed_pseudogene Interval_53798 chr14 61893585 61893865 + 0 NA Intergenic Intergenic -27651 ENSMUSG00000114706.1 ENSMUSG00000114706 ENSMUST00000224682 Gm47952 processed_pseudogene Interval_88269 chr2 3143231 3143640 + 0 NA intron (ENSMUSG00000050530.14, intron 1 of 7) protein_coding-intron (ENSMUSG00000050530.14, intron 1 of 7) 25053 ENSMUSG00000050530.14 ENSMUSG00000050530 ENSMUST00000062934 Fam171a1 protein_coding Interval_125148 chr5 64855276 64855551 + 0 NA Intergenic Intergenic 43556 ENSMUSG00000118495.1 ENSMUSG00000118495 ENSMUST00000238830 AC161757.1 processed_pseudogene Interval_23173 chr11 20326258 20327145 + 0 NA intron (ENSMUSG00000020142.12, intron 1 of 7) protein_coding-intron (ENSMUSG00000020142.12, intron 1 of 7) 6012 ENSMUSG00000020142.12 ENSMUSG00000020142 ENSMUST00000004634 Slc1a4 protein_coding Interval_19522 chr10 101968143 101968358 + 0 NA intron (ENSMUSG00000019888.16, intron 3 of 8) protein_coding-intron (ENSMUSG00000019888.16, intron 2 of 5) -190655 ENSMUSG00000019888.16 ENSMUSG00000019888 ENSMUST00000120748 Mgat4c protein_coding Interval_168734 chr9 86528431 86529491 + 0 NA intron (ENSMUSG00000034973.16, intron 24 of 37) protein_coding-intron (ENSMUSG00000034973.16, intron 23 of 36) 17834 ENSMUSG00000103731.1 ENSMUSG00000103731 ENSMUST00000194336 Gm17530 TEC Interval_144065 chr7 19265887 19267328 + 0 NA promoter-TSS (ENSMUSG00000030403.9) protein_coding-promoter-TSS (ENSMUSG00000030403.9) -61 ENSMUSG00000030403.9 ENSMUSG00000030403 ENSMUST00000206229 Vasp protein_coding Interval_26226 chr11 55250955 55251725 + 0 NA exon (ENSMUSG00000055333.14, exon 24 of 24) protein_coding-exon (ENSMUSG00000055333.14, exon 24 of 24) 46978 ENSMUSG00000020261.15 ENSMUSG00000020261 ENSMUST00000108867 Slc36a1 protein_coding Interval_114661 chr4 83556052 83556562 + 0 NA TTS (ENSMUSG00000052407.17) protein_coding-TTS (ENSMUSG00000052407.17) -28539 ENSMUSG00000064606.1 ENSMUSG00000064606 ENSMUST00000082672 Gm25899 snRNA Interval_166073 chr9 56349883 56350209 + 0 NA intron (ENSMUSG00000074305.9, intron 2 of 6) protein_coding-intron (ENSMUSG00000074305.9, intron 2 of 6) 66020 ENSMUSG00000102419.1 ENSMUSG00000102419 ENSMUST00000194281 Gm36940 TEC Interval_93883 chr2 77927648 77928217 + 0 NA intron (ENSMUSG00000027014.14, intron 5 of 11) protein_coding-intron (ENSMUSG00000027014.14, intron 6 of 20) 8795 ENSMUSG00000027014.14 ENSMUSG00000027014 ENSMUST00000156863 Cwc22 protein_coding Interval_97985 chr2 146423851 146424128 + 0 NA intron (ENSMUSG00000037110.20, intron 15 of 41) protein_coding-intron (ENSMUSG00000037110.20, intron 15 of 15) 88355 ENSMUSG00000037110.20 ENSMUSG00000037110 ENSMUST00000124709 Ralgapa2 protein_coding Interval_167253 chr9 66701546 66702363 + 0 NA Intergenic Intergenic -11775 ENSMUSG00000032373.15 ENSMUSG00000032373 ENSMUST00000134829 Car12 protein_coding Interval_163872 chr9 27348183 27348373 + 0 NA exon (ENSMUSG00000034275.18, exon 20 of 20) protein_coding-exon (ENSMUSG00000034275.18, exon 20 of 20) -37989 ENSMUSG00000110920.1 ENSMUSG00000110920 ENSMUST00000215351 Gm48858 processed_pseudogene Interval_50352 chr14 12005061 12005252 + 0 NA intron (ENSMUSG00000021745.14, intron 4 of 29) protein_coding-intron (ENSMUSG00000021745.14, intron 4 of 29) -23948 ENSMUSG00000085883.2 ENSMUSG00000085883 ENSMUST00000151564 Gm3848 antisense Interval_154946 chr8 25221921 25222180 + 0 NA intron (ENSMUSG00000065954.11, intron 1 of 4) protein_coding-intron (ENSMUSG00000065954.11, intron 1 of 2) -20601 ENSMUSG00000065954.11 ENSMUSG00000065954 ENSMUST00000211218 Tacc1 protein_coding Interval_130459 chr5 127822110 127822411 + 0 NA intron (ENSMUSG00000034310.8, intron 5 of 8) protein_coding-intron (ENSMUSG00000034310.8, intron 5 of 8) -55073 ENSMUSG00000061331.5 ENSMUSG00000061331 ENSMUST00000109542 Gm17132 unprocessed_pseudogene Interval_69429 chr16 93329058 93329403 + 0 NA Intergenic Intergenic 36160 ENSMUSG00000100277.8 ENSMUSG00000100277 ENSMUST00000231338 1810053B23Rik processed_transcript Interval_334 chr1 4213975 4214989 + 0 NA intron (ENSMUSG00000025900.13, intron 15 of 29) protein_coding-intron (ENSMUSG00000025900.13, intron 15 of 29) 46037 ENSMUSG00000102948.1 ENSMUSG00000102948 ENSMUST00000195384 Gm6101 processed_pseudogene Interval_24245 chr11 31759515 31759700 + 0 NA Intergenic Intergenic 60959 ENSMUSG00000103635.1 ENSMUSG00000103635 ENSMUST00000192490 Gm38061 TEC Interval_24478 chr11 33554242 33554551 + 0 NA exon (ENSMUSG00000020159.8, exon 9 of 10) protein_coding-exon (ENSMUSG00000020159.8, exon 9 of 10) 24563 ENSMUSG00000020159.8 ENSMUSG00000020159 ENSMUST00000135350 Gabrp protein_coding Interval_11722 chr1 184882272 184883576 + 0 NA exon (ENSMUSG00000039349.5, exon 1 of 2) protein_coding-exon (ENSMUSG00000039349.5, exon 1 of 2) 294 ENSMUSG00000039349.5 ENSMUSG00000039349 ENSMUST00000048308 C130074G19Rik protein_coding Interval_3933 chr1 64922306 64922984 + 0 NA intron (ENSMUSG00000051344.13, intron 2 of 8) protein_coding-intron (ENSMUSG00000051344.13, intron 2 of 7) -11757 ENSMUSG00000097264.1 ENSMUSG00000097264 ENSMUST00000181350 Rpl31-ps24 processed_pseudogene Interval_147595 chr7 68829543 68830594 + 0 NA Intergenic Intergenic -80880 ENSMUSG00000042659.15 ENSMUSG00000042659 ENSMUST00000118110 Arrdc4 protein_coding Interval_106023 chr3 90752241 90753030 + 0 NA Intergenic Intergenic -6097 ENSMUSG00000105892.1 ENSMUSG00000105892 ENSMUST00000197218 Gm35013 processed_pseudogene Interval_36674 chr12 51947371 51947927 + 0 NA promoter-TSS (ENSMUSG00000035181.6) protein_coding-promoter-TSS (ENSMUSG00000035181.6) -7699 ENSMUSG00000035181.6 ENSMUSG00000035181 ENSMUST00000219277 Heatr5a protein_coding Interval_171951 chr9 122886251 122887591 + 0 NA exon (ENSMUSG00000097322.8, exon 3 of 3) processed_transcript-exon (ENSMUSG00000097322.8, exon 3 of 3) -10807 ENSMUSG00000063488.6 ENSMUSG00000063488 ENSMUST00000216429 Zkscan7 protein_coding Interval_96616 chr2 126552114 126553886 + 0 NA promoter-TSS (ENSMUSG00000027359.16) protein_coding-promoter-TSS (ENSMUSG00000027359.16) -11760 ENSMUSG00000027359.16 ENSMUSG00000027359 ENSMUST00000150947 Slc27a2 protein_coding Interval_71129 chr17 19220708 19220929 + 0 NA Intergenic Intergenic -37112 ENSMUSG00000116587.1 ENSMUSG00000116587 ENSMUST00000232641 Gm49753 lincRNA Interval_114691 chr4 83876388 83877319 + 0 NA Intergenic Intergenic 12005 ENSMUSG00000085378.1 ENSMUSG00000085378 ENSMUST00000128214 Gm11415 lincRNA Interval_152597 chr7 134978298 134978603 + 0 NA intron (ENSMUSG00000058325.6, intron 27 of 29) protein_coding-intron (ENSMUSG00000058325.6, intron 27 of 51) -40172 ENSMUSG00000073805.5 ENSMUSG00000073805 ENSMUST00000210826 Insyn2a protein_coding Interval_25977 chr11 53282030 53282277 + 0 NA intron (ENSMUSG00000020361.13, intron 6 of 15) protein_coding-intron (ENSMUSG00000020361.13, intron 6 of 18) 18258 ENSMUSG00000020361.13 ENSMUSG00000020361 ENSMUST00000151854 Hspa4 protein_coding Interval_91906 chr2 51176618 51177816 + 0 NA Intergenic Intergenic -28107 ENSMUSG00000017144.8 ENSMUSG00000017144 ENSMUST00000140864 Rnd3 protein_coding Interval_122969 chr5 28059739 28059948 + 0 NA intron (ENSMUSG00000097673.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000097673.1, intron 1 of 2) -4384 ENSMUSG00000097673.1 ENSMUSG00000097673 ENSMUST00000181503 Gm26608 lincRNA Interval_169953 chr9 103174930 103175899 + 0 NA intron (ENSMUSG00000032549.7, intron 7 of 7) protein_coding-intron (ENSMUSG00000032549.7, intron 7 of 7) 16898 ENSMUSG00000032553.14 ENSMUSG00000032553 ENSMUST00000190760 Srprb protein_coding Interval_62637 chr15 95853167 95853383 + 0 NA intron (ENSMUSG00000064210.7, intron 2 of 20) protein_coding-intron (ENSMUSG00000064210.7, intron 1 of 19) -23203 ENSMUSG00000078648.3 ENSMUSG00000078648 ENSMUST00000168960 Gm17546 antisense Interval_167003 chr9 64436688 64437263 + 0 NA intron (ENSMUSG00000036466.17, intron 1 of 24) protein_coding-intron (ENSMUSG00000036466.17, intron 1 of 24) 51349 ENSMUSG00000036466.17 ENSMUSG00000036466 ENSMUST00000153934 Megf11 protein_coding Interval_6853 chr1 120098512 120098893 + 0 NA Intergenic Intergenic 22235 ENSMUSG00000026385.16 ENSMUSG00000026385 ENSMUST00000149628 Dbi protein_coding Interval_33248 chr11 115462425 115465017 + 0 NA promoter-TSS (ENSMUSG00000045775.15) protein_coding-promoter-TSS (ENSMUSG00000045775.15) -267 ENSMUSG00000085651.1 ENSMUSG00000085651 ENSMUST00000144230 Gm11695 antisense Interval_86654 chr19 42326049 42326464 + 0 NA intron (ENSMUSG00000042401.8, intron 3 of 14) protein_coding-intron (ENSMUSG00000042401.8, intron 3 of 14) -46086 ENSMUSG00000093234.1 ENSMUSG00000093234 ENSMUST00000175493 Mir3085 miRNA Interval_104586 chr3 68550629 68551250 + 0 NA intron (ENSMUSG00000027777.15, intron 2 of 5) protein_coding-intron (ENSMUSG00000027777.15, intron 2 of 7) -3231 ENSMUSG00000084617.1 ENSMUSG00000084617 ENSMUST00000122668 Gm22073 snRNA Interval_111365 chr4 19717088 19717595 + 0 NA intron (ENSMUSG00000086071.7, intron 2 of 2) lincRNA-intron (ENSMUSG00000086071.7, intron 2 of 2) 2858 ENSMUSG00000086071.7 ENSMUSG00000086071 ENSMUST00000131133 Gm12354 lincRNA Interval_25339 chr11 46487081 46488468 + 0 NA Intergenic Intergenic 32805 ENSMUSG00000020399.14 ENSMUSG00000020399 ENSMUST00000109229 Havcr2 protein_coding Interval_173469 chrX 94224633 94225311 + 0 NA Intergenic Intergenic -10339 ENSMUSG00000043929.16 ENSMUSG00000043929 ENSMUST00000113915 Klhl15 protein_coding Interval_11757 chr1 185236501 185236876 + 0 NA intron (ENSMUSG00000039318.12, intron 7 of 34) protein_coding-intron (ENSMUSG00000039318.12, intron 7 of 34) -6219 ENSMUSG00000077571.1 ENSMUSG00000077571 ENSMUST00000104383 Snora36b snoRNA Interval_169977 chr9 103376421 103377184 + 0 NA Intergenic Intergenic -11823 ENSMUSG00000032803.15 ENSMUSG00000032803 ENSMUST00000190127 Cdv3 protein_coding Interval_122499 chr5 23454822 23455080 + 0 NA intron (ENSMUSG00000029004.15, intron 2 of 12) protein_coding-intron (ENSMUSG00000029004.15, intron 2 of 25) -21642 ENSMUSG00000073147.3 ENSMUSG00000073147 ENSMUST00000189045 5031425E22Rik lincRNA Interval_152807 chr7 137945150 137945411 + 0 NA Intergenic Intergenic -116726 ENSMUSG00000109834.1 ENSMUSG00000109834 ENSMUST00000209641 Gm5650 processed_pseudogene Interval_76248 chr17 78430531 78430758 + 0 NA Intergenic Intergenic 21828 ENSMUSG00000117525.1 ENSMUSG00000117525 ENSMUST00000234569 Gm50034 antisense Interval_141222 chr6 125735938 125736647 + 0 NA intron (ENSMUSG00000038115.16, intron 2 of 25) protein_coding-intron (ENSMUSG00000038115.16, intron 3 of 15) -3114 ENSMUSG00000089834.2 ENSMUSG00000089834 ENSMUST00000161498 Gm16303 processed_pseudogene Interval_166079 chr9 56488306 56488543 + 0 NA intron (ENSMUSG00000032329.4, intron 7 of 7) protein_coding-intron (ENSMUSG00000032329.4, intron 7 of 9) 18237 ENSMUSG00000111343.1 ENSMUSG00000111343 ENSMUST00000216940 Gm47175 TEC Interval_148368 chr7 80823037 80824031 + 0 NA intron (ENSMUSG00000030536.10, intron 1 of 4) protein_coding-intron (ENSMUSG00000030536.10, intron 1 of 4) -20271 ENSMUSG00000030536.10 ENSMUSG00000030536 ENSMUST00000205540 Iqgap1 protein_coding Interval_16796 chr10 68211835 68212813 + 0 NA intron (ENSMUSG00000019947.10, intron 3 of 9) protein_coding-intron (ENSMUSG00000019947.10, intron 3 of 10) 66416 ENSMUSG00000019947.10 ENSMUSG00000019947 ENSMUST00000218425 Arid5b protein_coding Interval_40648 chr12 106378590 106380143 + 0 NA Intergenic Intergenic 51998 ENSMUSG00000091280.1 ENSMUSG00000091280 ENSMUST00000164367 Gm17032 lincRNA Interval_161044 chr8 117115640 117116284 + 0 NA intron (ENSMUSG00000031845.15, intron 6 of 11) protein_coding-intron (ENSMUSG00000031845.15, intron 6 of 10) -9373 ENSMUSG00000093446.1 ENSMUSG00000093446 ENSMUST00000176943 Gm20694 processed_pseudogene Interval_27866 chr11 70509753 70510687 + 0 NA promoter-TSS (ENSMUSG00000018919.10) protein_coding-promoter-TSS (ENSMUSG00000018919.10) 250 ENSMUSG00000018919.10 ENSMUSG00000018919 ENSMUST00000141924 Tm4sf5 protein_coding Interval_51895 chr14 33441340 33441952 + 0 NA intron (ENSMUSG00000021936.14, intron 1 of 4) protein_coding-intron (ENSMUSG00000021936.14, intron 1 of 11) 9513 ENSMUSG00000115745.1 ENSMUSG00000115745 ENSMUST00000228189 Gm46448 processed_pseudogene Interval_62043 chr15 86067419 86067750 + 0 NA promoter-TSS (ENSMUSG00000035900.18) protein_coding-promoter-TSS (ENSMUSG00000035900.18) -7149 ENSMUSG00000035900.18 ENSMUSG00000035900 ENSMUST00000147286 Gramd4 protein_coding Interval_69664 chr16 95069109 95069394 + 0 NA Intergenic Intergenic -33153 ENSMUSG00000116667.1 ENSMUSG00000116667 ENSMUST00000232306 Gm49641 processed_pseudogene Interval_144873 chr7 28713845 28714293 + 0 NA Intergenic Intergenic -18431 ENSMUSG00000030598.15 ENSMUSG00000030598 ENSMUST00000167118 Fbxo17 protein_coding Interval_134050 chr6 18108776 18109450 + 0 NA promoter-TSS (ENSMUSG00000010796.11) protein_coding-promoter-TSS (ENSMUSG00000010796.11) 2848 ENSMUSG00000107177.1 ENSMUSG00000107177 ENSMUST00000202462 Gm43845 TEC Interval_74591 chr17 53573129 53573575 + 0 NA intron (ENSMUSG00000000708.14, intron 1 of 17) protein_coding-intron (ENSMUSG00000000708.14, intron 1 of 17) 25311 ENSMUSG00000096517.1 ENSMUSG00000096517 ENSMUST00000180049 Gm6919 processed_pseudogene Interval_113859 chr4 59401611 59402561 + 0 NA intron (ENSMUSG00000038578.15, intron 5 of 16) protein_coding-intron (ENSMUSG00000038578.15, intron 5 of 16) -33220 ENSMUSG00000083979.1 ENSMUSG00000083979 ENSMUST00000117967 Gm12527 processed_pseudogene Interval_90100 chr2 28011510 28012372 + 0 NA intron (ENSMUSG00000026837.16, intron 48 of 65) protein_coding-intron (ENSMUSG00000026837.16, intron 48 of 65) -10345 ENSMUSG00000026837.16 ENSMUSG00000026837 ENSMUST00000238851 Col5a1 protein_coding Interval_107963 chr3 117728278 117728950 + 0 NA Intergenic Intergenic 118094 ENSMUSG00000028007.13 ENSMUSG00000028007 ENSMUST00000196421 Snx7 protein_coding Interval_2292 chr1 37719339 37720526 + 0 NA promoter-TSS (ENSMUSG00000026090.16) protein_coding-promoter-TSS (ENSMUSG00000026090.16) 153 ENSMUSG00000026090.16 ENSMUSG00000026090 ENSMUST00000160589 2010300C02Rik protein_coding Interval_43205 chr13 25179039 25179227 + 0 NA intron (ENSMUSG00000035910.15, intron 7 of 9) protein_coding-intron (ENSMUSG00000035910.15, intron 7 of 9) -8321 ENSMUSG00000035910.15 ENSMUSG00000035910 ENSMUST00000160363 Dcdc2a protein_coding Interval_21746 chr11 4083182 4083808 + 0 NA Intergenic Intergenic 11645 ENSMUSG00000004748.5 ENSMUSG00000004748 ENSMUST00000123607 Mtfp1 protein_coding Interval_39240 chr12 86142552 86143035 + 0 NA intron (ENSMUSG00000007867.9, intron 5 of 8) protein_coding-intron (ENSMUSG00000007867.9, intron 4 of 7) -26548 ENSMUSG00000097543.1 ENSMUSG00000097543 ENSMUST00000181667 Gm805 lincRNA Interval_105963 chr3 90338351 90338583 + 0 NA TTS (ENSMUSG00000108689.1) TEC-TTS (ENSMUSG00000108689.1) 3072 ENSMUSG00000108689.1 ENSMUSG00000108689 ENSMUST00000199820 Gm45354 TEC Interval_42653 chr13 17726847 17727172 + 0 NA TTS (ENSMUSG00000041297.8) protein_coding-TTS (ENSMUSG00000041297.8) 10045 ENSMUSG00000113432.1 ENSMUSG00000113432 ENSMUST00000220908 8430406P12Rik TEC Interval_152129 chr7 129770793 129771313 + 0 NA Intergenic Intergenic -61993 ENSMUSG00000108576.1 ENSMUSG00000108576 ENSMUST00000206447 Gm44778 lincRNA Interval_91994 chr2 52378022 52379155 + 0 NA promoter-TSS (ENSMUSG00000026950.18) protein_coding-promoter-TSS (ENSMUSG00000026950.18) -6160 ENSMUSG00000086447.2 ENSMUSG00000086447 ENSMUST00000124622 Gm13522 antisense Interval_125431 chr5 67055292 67055650 + 0 NA TTS (ENSMUSG00000037736.20) protein_coding-TTS (ENSMUSG00000037736.20) -1679 ENSMUSG00000080601.1 ENSMUSG00000080601 ENSMUST00000116951 Gm23841 miRNA Interval_109877 chr3 149314080 149315309 + 0 NA exon (ENSMUSG00000106515.4, exon 2 of 2) lincRNA-exon (ENSMUSG00000106515.4, exon 2 of 2) 9865 ENSMUSG00000105797.1 ENSMUSG00000105797 ENSMUST00000199768 Gm5149 lincRNA Interval_114060 chr4 62822735 62823191 + 0 NA Intergenic Intergenic 10535 ENSMUSG00000077161.1 ENSMUSG00000077161 ENSMUST00000103973 Gm24117 snoRNA Interval_55640 chr14 97460962 97461305 + 0 NA Intergenic Intergenic -124501 ENSMUSG00000088538.1 ENSMUSG00000088538 ENSMUST00000157913 Gm23276 snoRNA Interval_33303 chr11 115806387 115807178 + 0 NA TTS (ENSMUSG00000034471.12) protein_coding-TTS (ENSMUSG00000034471.12) 6857 ENSMUSG00000034471.12 ENSMUSG00000034471 ENSMUST00000156812 Caskin2 protein_coding Interval_42523 chr13 14470842 14471406 + 0 NA intron (ENSMUSG00000021301.9, intron 1 of 7) protein_coding-intron (ENSMUSG00000021301.9, intron 1 of 28) 50728 ENSMUSG00000021301.9 ENSMUSG00000021301 ENSMUST00000223283 Hecw1 protein_coding Interval_33231 chr11 115374233 115374950 + 0 NA Intergenic Intergenic -7325 ENSMUSG00000050910.5 ENSMUSG00000050910 ENSMUST00000053288 Cdr2l protein_coding Interval_115330 chr4 96696515 96698433 + 0 NA Intergenic Intergenic -33320 ENSMUSG00000052520.7 ENSMUSG00000052520 ENSMUST00000030299 Cyp2j5 protein_coding Interval_99775 chr2 164832461 164834761 + 0 NA promoter-TSS (ENSMUSG00000039873.4) protein_coding-promoter-TSS (ENSMUSG00000039873.4) -155 ENSMUSG00000039873.4 ENSMUSG00000039873 ENSMUST00000042775 Neurl2 protein_coding Interval_21877 chr11 4899727 4900840 + 0 NA intron (ENSMUSG00000034274.11, intron 2 of 18) protein_coding-intron (ENSMUSG00000034274.11, intron 2 of 19) 8938 ENSMUSG00000098296.1 ENSMUSG00000098296 ENSMUST00000183479 Mir6918 miRNA Interval_44117 chr13 40994168 40995423 + 0 NA intron (ENSMUSG00000086693.1, intron 1 of 4) antisense-intron (ENSMUSG00000086693.1, intron 1 of 4) 6356 ENSMUSG00000086693.1 ENSMUSG00000086693 ENSMUST00000153685 A730081D07Rik antisense Interval_117672 chr4 125486834 125487629 + 0 NA Intergenic Intergenic -3469 ENSMUSG00000001985.9 ENSMUSG00000001985 ENSMUST00000030676 Grik3 protein_coding Interval_75344 chr17 66026746 66027297 + 0 NA intron (ENSMUSG00000034647.15, intron 7 of 8) protein_coding-intron (ENSMUSG00000034647.15, intron 7 of 12) 21316 ENSMUSG00000117074.1 ENSMUSG00000117074 ENSMUST00000233477 Gm49925 processed_pseudogene Interval_24207 chr11 31414034 31414707 + 0 NA Intergenic Intergenic -44323 ENSMUSG00000020303.2 ENSMUSG00000020303 ENSMUST00000134199 Stc2 protein_coding Interval_57816 chr15 21342111 21342628 + 0 NA intron (ENSMUSG00000040452.9, intron 3 of 12) protein_coding-intron (ENSMUSG00000040452.9, intron 2 of 11) 162212 ENSMUSG00000103296.1 ENSMUSG00000103296 ENSMUST00000195204 Gm38234 TEC Interval_78679 chr18 16835790 16836567 + 0 NA Intergenic Intergenic 3779 ENSMUSG00000082608.1 ENSMUSG00000082608 ENSMUST00000121272 Gm7670 processed_pseudogene Interval_83618 chr18 90599595 90600586 + 0 NA Intergenic Intergenic 14618 ENSMUSG00000109923.1 ENSMUSG00000109923 ENSMUST00000210329 Gm20039 processed_pseudogene Interval_83606 chr18 90536017 90536767 + 0 NA promoter-TSS (ENSMUSG00000024614.7) protein_coding-promoter-TSS (ENSMUSG00000024614.7) 5456 ENSMUSG00000117747.1 ENSMUSG00000117747 ENSMUST00000236589 Gm50438 transcribed_processed_pseudogene Interval_173028 chrX 65863353 65863723 + 0 NA Intergenic Intergenic -72811 ENSMUSG00000083243.1 ENSMUSG00000083243 ENSMUST00000118588 Gm14668 processed_pseudogene Interval_57045 chr15 5103256 5103482 + 0 NA intron (ENSMUSG00000041849.7, intron 3 of 3) protein_coding-intron (ENSMUSG00000041849.7, intron 3 of 3) 5115 ENSMUSG00000041849.7 ENSMUSG00000041849 ENSMUST00000141020 Card6 protein_coding Interval_43083 chr13 23732640 23733178 + 0 NA Intergenic Intergenic 4361 ENSMUSG00000083206.1 ENSMUSG00000083206 ENSMUST00000120086 Gm11338 unprocessed_pseudogene Interval_55949 chr14 103088066 103088973 + 0 NA TTS (ENSMUSG00000022124.15) protein_coding-TTS (ENSMUSG00000022124.15) 10987 ENSMUSG00000022124.15 ENSMUSG00000022124 ENSMUST00000123043 Fbxl3 protein_coding Interval_718 chr1 10132059 10132561 + 0 NA intron (ENSMUSG00000056763.16, intron 7 of 9) protein_coding-intron (ENSMUSG00000056763.16, intron 26 of 29) 9391 ENSMUSG00000067851.11 ENSMUSG00000067851 ENSMUST00000186720 Arfgef1 protein_coding Interval_103620 chr3 51247225 51248370 + 0 NA exon (ENSMUSG00000023087.15, exon 1 of 2) protein_coding-exon (ENSMUSG00000023087.15, exon 1 of 2) 4389 ENSMUSG00000023087.15 ENSMUSG00000023087 ENSMUST00000193018 Noct protein_coding Interval_139032 chr6 94354642 94354861 + 0 NA Intergenic Intergenic 5217 ENSMUSG00000107435.1 ENSMUSG00000107435 ENSMUST00000204684 Gm19908 processed_pseudogene Interval_42594 chr13 16274566 16275422 + 0 NA intron (ENSMUSG00000113038.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000113038.1, intron 1 of 1) 2844 ENSMUSG00000113038.1 ENSMUSG00000113038 ENSMUST00000222297 Gm48491 lincRNA Interval_137203 chr6 69934217 69934477 + 0 NA Intergenic Intergenic -6445 ENSMUSG00000105451.1 ENSMUSG00000105451 ENSMUST00000199299 Gm43220 IG_V_pseudogene Interval_2190 chr1 36925976 36926498 + 0 NA exon (ENSMUSG00000103159.1, exon 1 of 1) TEC-exon (ENSMUSG00000103159.1, exon 1 of 1) 111 ENSMUSG00000103159.1 ENSMUSG00000103159 ENSMUST00000194249 F830112A20Rik TEC Interval_75870 chr17 72251532 72252920 + 0 NA intron (ENSMUSG00000055471.7, intron 3 of 4) protein_coding-intron (ENSMUSG00000055471.7, intron 3 of 28) -4032 ENSMUSG00000117046.1 ENSMUSG00000117046 ENSMUST00000233853 Gm19183 processed_pseudogene Interval_29705 chr11 86226647 86226869 + 0 NA exon (ENSMUSG00000018068.13, exon 17 of 25) protein_coding-exon (ENSMUSG00000018068.13, exon 17 of 25) 5418 ENSMUSG00000018068.13 ENSMUSG00000018068 ENSMUST00000141756 Ints2 protein_coding Interval_102479 chr3 27108985 27109627 + 0 NA TTS (ENSMUSG00000087742.1) snoRNA-TTS (ENSMUSG00000087742.1) 324 ENSMUSG00000087742.1 ENSMUSG00000087742 ENSMUST00000157117 Gm25152 snoRNA Interval_15524 chr10 50740626 50741279 + 0 NA intron (ENSMUSG00000038774.9, intron 30 of 41) protein_coding-intron (ENSMUSG00000038774.9, intron 30 of 41) -17232 ENSMUSG00000112918.1 ENSMUSG00000112918 ENSMUST00000220079 Gm18120 processed_pseudogene Interval_40992 chr12 110483900 110484133 + 0 NA promoter-TSS (ENSMUSG00000113585.1) processed_transcript-promoter-TSS (ENSMUSG00000113585.1) 1600 ENSMUSG00000113585.1 ENSMUSG00000113585 ENSMUST00000222863 Gm19605 processed_transcript Interval_50681 chr14 18177380 18177994 + 0 NA Intergenic Intergenic -11353 ENSMUSG00000114678.1 ENSMUSG00000114678 ENSMUST00000224869 Gm48481 processed_pseudogene Interval_151255 chr7 120314687 120315322 + 0 NA intron (ENSMUSG00000062017.15, intron 26 of 30) protein_coding-intron (ENSMUSG00000062017.15, intron 26 of 30) -13666 ENSMUSG00000054746.18 ENSMUSG00000054746 ENSMUST00000076272 Abca15 protein_coding Interval_34886 chr12 12982738 12983401 + 0 NA Intergenic Intergenic -4248 ENSMUSG00000113220.1 ENSMUSG00000113220 ENSMUST00000221590 Gm35208 lincRNA Interval_22769 chr11 15162005 15162287 + 0 NA Intergenic Intergenic 112988 ENSMUSG00000084183.1 ENSMUSG00000084183 ENSMUST00000121361 Gm12009 processed_pseudogene Interval_10766 chr1 174471953 174473847 + 0 NA Intergenic Intergenic 30818 ENSMUSG00000066671.4 ENSMUSG00000066671 ENSMUST00000085861 Olfr220 protein_coding Interval_165509 chr9 48860050 48860924 + 0 NA Intergenic Intergenic -24265 ENSMUSG00000066687.5 ENSMUSG00000066687 ENSMUST00000216150 Zbtb16 protein_coding Interval_124692 chr5 53325884 53326792 + 0 NA Intergenic Intergenic 20034 ENSMUSG00000077696.1 ENSMUSG00000077696 ENSMUST00000104508 n-R5s172 rRNA Interval_100606 chr2 170429010 170429459 + 0 NA Intergenic Intergenic 24053 ENSMUSG00000086970.1 ENSMUSG00000086970 ENSMUST00000133586 Bcas1os1 antisense Interval_50090 chr14 7913724 7914620 + 0 NA intron (ENSMUSG00000025278.9, intron 25 of 45) protein_coding-intron (ENSMUSG00000025278.9, intron 25 of 45) 29431 ENSMUSG00000025278.9 ENSMUSG00000025278 ENSMUST00000228206 Flnb protein_coding Interval_121409 chr4 155601013 155602218 + 0 NA promoter-TSS (ENSMUSG00000042202.15) protein_coding-promoter-TSS (ENSMUSG00000042202.15) -8588 ENSMUSG00000042202.15 ENSMUSG00000042202 ENSMUST00000151425 Slc35e2 protein_coding Interval_85380 chr19 25342328 25342693 + 0 NA intron (ENSMUSG00000032702.16, intron 3 of 13) protein_coding-intron (ENSMUSG00000032702.16, intron 3 of 13) 4693 ENSMUSG00000118238.1 ENSMUSG00000118238 ENSMUST00000235913 Gm34432 processed_pseudogene Interval_78033 chr18 7180865 7181072 + 0 NA intron (ENSMUSG00000061802.6, intron 2 of 2) protein_coding-intron (ENSMUSG00000061802.6, intron 18 of 20) 3105 ENSMUSG00000061802.6 ENSMUSG00000061802 ENSMUST00000234196 Armc4 protein_coding Interval_95483 chr2 109990969 109991375 + 0 NA exon (ENSMUSG00000050199.13, exon 4 of 18) protein_coding-exon (ENSMUSG00000050199.13, exon 4 of 18) 15630 ENSMUSG00000050199.13 ENSMUSG00000050199 ENSMUST00000142869 Lgr4 protein_coding Interval_100342 chr2 168518373 168518737 + 0 NA TTS (ENSMUSG00000027544.16) protein_coding-TTS (ENSMUSG00000027544.16) 83100 ENSMUSG00000027544.16 ENSMUSG00000027544 ENSMUST00000138546 Nfatc2 protein_coding Interval_16495 chr10 63192036 63193220 + 0 NA exon (ENSMUSG00000020067.8, exon 2 of 20) protein_coding-exon (ENSMUSG00000020067.8, exon 2 of 20) 51525 ENSMUSG00000045391.4 ENSMUSG00000045391 ENSMUST00000054837 1700120B22Rik bidirectional_promoter_lncRNA Interval_148943 chr7 90228735 90229309 + 0 NA intron (ENSMUSG00000030617.13, intron 8 of 10) protein_coding-intron (ENSMUSG00000030617.13, intron 8 of 10) 27744 ENSMUSG00000109279.1 ENSMUSG00000109279 ENSMUST00000207847 Gm45220 TEC Interval_73297 chr17 36035285 36035571 + 0 NA intron (ENSMUSG00000092368.1, intron 1 of 1) antisense-intron (ENSMUSG00000092368.1, intron 1 of 1) -2738 ENSMUSG00000067212.8 ENSMUSG00000067212 ENSMUST00000174471 H2-T23 protein_coding Interval_158700 chr8 85405409 85406276 + 0 NA Intergenic Intergenic 8673 ENSMUSG00000109790.1 ENSMUSG00000109790 ENSMUST00000211717 Gm45594 processed_pseudogene Interval_87560 chr19 53442949 53443459 + 0 NA TTS (ENSMUSG00000097636.8) processed_transcript-TTS (ENSMUSG00000097636.8) -17418 ENSMUSG00000097779.2 ENSMUSG00000097779 ENSMUST00000180442 4833407H14Rik lincRNA Interval_139229 chr6 97349362 97349916 + 0 NA intron (ENSMUSG00000030064.16, intron 4 of 7) protein_coding-intron (ENSMUSG00000030064.16, intron 7 of 22) -58378 ENSMUSG00000030064.16 ENSMUSG00000030064 ENSMUST00000124050 Frmd4b protein_coding Interval_82905 chr18 78756388 78756818 + 0 NA intron (ENSMUSG00000024548.11, intron 5 of 5) protein_coding-intron (ENSMUSG00000024548.11, intron 5 of 5) 108475 ENSMUSG00000088733.1 ENSMUSG00000088733 ENSMUST00000158108 Gm23895 snRNA Interval_2311 chr1 37959672 37960873 + 0 NA Intergenic Intergenic -11273 ENSMUSG00000026085.11 ENSMUSG00000026085 ENSMUST00000114894 Lyg1 protein_coding Interval_78294 chr18 11775075 11775288 + 0 NA Intergenic Intergenic -22626 ENSMUSG00000117589.1 ENSMUSG00000117589 ENSMUST00000234203 Gm18713 processed_pseudogene Interval_158302 chr8 80941106 80942209 + 0 NA Intergenic Intergenic -2990 ENSMUSG00000098001.1 ENSMUSG00000098001 ENSMUST00000182891 Gm27048 lincRNA Interval_1467 chr1 23837340 23837971 + 0 NA intron (ENSMUSG00000026156.8, intron 2 of 3) protein_coding-intron (ENSMUSG00000026156.8, intron 2 of 3) 72081 ENSMUSG00000026155.13 ENSMUSG00000026155 ENSMUST00000133398 Smap1 protein_coding Interval_6744 chr1 119143479 119144585 + 0 NA Intergenic Intergenic -13554 ENSMUSG00000096939.1 ENSMUSG00000096939 ENSMUST00000181691 Gm8321 processed_pseudogene Interval_130266 chr5 125292717 125293138 + 0 NA intron (ENSMUSG00000037936.15, intron 7 of 10) protein_coding-intron (ENSMUSG00000037936.15, intron 7 of 12) -20112 ENSMUSG00000105039.1 ENSMUSG00000105039 ENSMUST00000198586 Gm32585 lincRNA Interval_105802 chr3 89408331 89409046 + 0 NA TTS (ENSMUSG00000042642.13) protein_coding-TTS (ENSMUSG00000042642.13) 3182 ENSMUSG00000042642.13 ENSMUSG00000042642 ENSMUST00000162701 Flad1 protein_coding Interval_54341 chr14 67808747 67809095 + 0 NA intron (ENSMUSG00000044447.5, intron 22 of 51) protein_coding-intron (ENSMUSG00000044447.5, intron 22 of 51) -43962 ENSMUSG00000044447.5 ENSMUSG00000044447 ENSMUST00000224823 Dock5 protein_coding Interval_144281 chr7 24268190 24270667 + 0 NA promoter-TSS (ENSMUSG00000055305.15) protein_coding-promoter-TSS (ENSMUSG00000055305.15) -1185 ENSMUSG00000055305.15 ENSMUSG00000055305 ENSMUST00000032696 Zfp93 protein_coding Interval_74963 chr17 58355965 58356562 + 0 NA intron (ENSMUSG00000038048.8, intron 19 of 23) protein_coding-intron (ENSMUSG00000038048.8, intron 19 of 23) -106062 ENSMUSG00000117281.1 ENSMUSG00000117281 ENSMUST00000233462 Gm49848 processed_pseudogene Interval_82104 chr18 67754206 67755438 + 0 NA Intergenic Intergenic 20035 ENSMUSG00000097835.1 ENSMUSG00000097835 ENSMUST00000180450 Gm26910 bidirectional_promoter_lncRNA Interval_114 GL456239.1 22270 22641 + 0 NA NA NA NA NA Interval_11958 chr1 187656191 187656465 + 0 NA intron (ENSMUSG00000026610.13, intron 1 of 1) protein_coding-intron (ENSMUSG00000026610.13, intron 1 of 7) -4504 ENSMUSG00000103961.1 ENSMUSG00000103961 ENSMUST00000191663 Gm36388 antisense Interval_60839 chr15 77070749 77071962 + 0 NA Intergenic Intergenic 3564 ENSMUSG00000095245.1 ENSMUSG00000095245 ENSMUST00000178183 Gm24753 snRNA Interval_89550 chr2 22634826 22635307 + 0 NA intron (ENSMUSG00000026787.3, intron 7 of 15) protein_coding-intron (ENSMUSG00000026787.3, intron 7 of 15) 11762 ENSMUSG00000026787.3 ENSMUSG00000026787 ENSMUST00000156728 Gad2 protein_coding Interval_20050 chr10 112728003 112728407 + 0 NA intron (ENSMUSG00000100314.6, intron 1 of 6) lincRNA-intron (ENSMUSG00000100314.6, intron 1 of 3) 1279 ENSMUSG00000100314.6 ENSMUSG00000100314 ENSMUST00000189116 1700010J16Rik lincRNA Interval_148780 chr7 87100749 87101593 + 0 NA Intergenic Intergenic -17696 ENSMUSG00000109334.1 ENSMUSG00000109334 ENSMUST00000208879 Gm44925 TEC Interval_125129 chr5 64747041 64748061 + 0 NA intron (ENSMUSG00000097640.7, intron 1 of 4) processed_transcript-intron (ENSMUSG00000097640.7, intron 1 of 4) -49030 ENSMUSG00000097668.2 ENSMUSG00000097668 ENSMUST00000180650 Gm26761 lincRNA Interval_157045 chr8 64757740 64758571 + 0 NA exon (ENSMUSG00000031605.8, exon 8 of 15) protein_coding-exon (ENSMUSG00000031605.8, exon 8 of 15) -27096 ENSMUSG00000031604.10 ENSMUSG00000031604 ENSMUST00000141021 Msmo1 protein_coding Interval_150185 chr7 107680230 107681543 + 0 NA intron (ENSMUSG00000036528.16, intron 1 of 6) protein_coding-intron (ENSMUSG00000036528.16, intron 3 of 24) 15575 ENSMUSG00000036528.16 ENSMUSG00000036528 ENSMUST00000208159 Ppfibp2 protein_coding Interval_61482 chr15 81891156 81892712 + 0 NA intron (ENSMUSG00000022477.13, intron 2 of 2) protein_coding-intron (ENSMUSG00000022477.13, intron 2 of 17) 19244 ENSMUSG00000022477.13 ENSMUSG00000022477 ENSMUST00000144324 Aco2 protein_coding Interval_120097 chr4 141793122 141794132 + 0 NA promoter-TSS (ENSMUSG00000028914.13) protein_coding-promoter-TSS (ENSMUSG00000028914.13) -83 ENSMUSG00000028914.13 ENSMUSG00000028914 ENSMUST00000124161 Casp9 protein_coding Interval_171705 chr9 120337750 120338587 + 0 NA intron (ENSMUSG00000041794.13, intron 2 of 5) protein_coding-intron (ENSMUSG00000041794.13, intron 2 of 16) 21840 ENSMUSG00000083772.1 ENSMUSG00000083772 ENSMUST00000121130 Gm15566 processed_pseudogene Interval_112857 chr4 45561990 45562379 + 0 NA Intergenic Intergenic 12167 ENSMUSG00000081559.3 ENSMUSG00000081559 ENSMUST00000119140 Gm12411 processed_pseudogene Interval_161399 chr8 120247795 120248334 + 0 NA intron (ENSMUSG00000031822.20, intron 1 of 2) protein_coding-intron (ENSMUSG00000092329.1, intron 1 of 15) -19834 ENSMUSG00000097960.1 ENSMUSG00000097960 ENSMUST00000183235 A330074K22Rik lincRNA Interval_130212 chr5 124980516 124980732 + 0 NA Intergenic Intergenic -22851 ENSMUSG00000037962.7 ENSMUSG00000037962 ENSMUST00000145946 Rflna protein_coding Interval_64830 chr16 16272998 16274121 + 0 NA TTS (ENSMUSG00000041957.15) protein_coding-TTS (ENSMUSG00000041957.15) -2044 ENSMUSG00000115882.1 ENSMUSG00000115882 ENSMUST00000231183 Gm5481 processed_pseudogene Interval_10652 chr1 172466459 172466695 + 0 NA intron (ENSMUSG00000103357.1, intron 3 of 3) transcribed_processed_pseudogene-intron (ENSMUSG00000103357.1, intron 3 of 3) -7457 ENSMUSG00000103357.1 ENSMUSG00000103357 ENSMUST00000194187 Gm7804 transcribed_processed_pseudogene Interval_44413 chr13 44710926 44712413 + 0 NA Intergenic Intergenic -19701 ENSMUSG00000038518.15 ENSMUSG00000038518 ENSMUST00000173003 Jarid2 protein_coding Interval_46535 chr13 66912796 66913359 + 0 NA intron (ENSMUSG00000021519.11, intron 2 of 2) protein_coding-intron (ENSMUSG00000021519.11, intron 7 of 7) 8163 ENSMUSG00000074826.10 ENSMUSG00000074826 ENSMUST00000099412 Gm10767 protein_coding Interval_39179 chr12 85638101 85639539 + 0 NA exon (ENSMUSG00000034271.16, exon 4 of 4) protein_coding-exon (ENSMUSG00000034271.16, exon 4 of 4) -23622 ENSMUSG00000113249.1 ENSMUSG00000113249 ENSMUST00000222443 Gm33312 processed_pseudogene Interval_3417 chr1 58156960 58157148 + 0 NA intron (ENSMUSG00000064294.12, intron 16 of 34) protein_coding-intron (ENSMUSG00000064294.12, intron 16 of 34) -1966 ENSMUSG00000089275.1 ENSMUSG00000089275 ENSMUST00000158650 Gm24548 snoRNA Interval_149896 chr7 102395175 102395499 + 0 NA intron (ENSMUSG00000030987.5, intron 3 of 12) protein_coding-intron (ENSMUSG00000030987.5, intron 3 of 11) -17000 ENSMUSG00000110175.1 ENSMUSG00000110175 ENSMUST00000211316 Gm18255 processed_pseudogene Interval_68468 chr16 77421525 77421936 + 0 NA promoter-TSS (ENSMUSG00000102344.1) TEC-promoter-TSS (ENSMUSG00000102344.1) 90 ENSMUSG00000102344.1 ENSMUSG00000102344 ENSMUST00000192654 9430053O09Rik TEC Interval_156780 chr8 59086317 59086562 + 0 NA Intergenic Intergenic 6984 ENSMUSG00000109746.1 ENSMUSG00000109746 ENSMUST00000210423 Gm7499 processed_pseudogene Interval_29535 chr11 84749703 84750462 + 0 NA Intergenic Intergenic 27747 ENSMUSG00000087407.1 ENSMUSG00000087407 ENSMUST00000155046 Gm11431 lincRNA Interval_118216 chr4 129571655 129571858 + 0 NA intron (ENSMUSG00000000409.14, intron 1 of 12) protein_coding-intron (ENSMUSG00000000409.14, intron 1 of 12) 5701 ENSMUSG00000050493.8 ENSMUSG00000050493 ENSMUST00000052835 Fam167b protein_coding Interval_89325 chr2 19365787 19367376 + 0 NA Intergenic Intergenic -5260 ENSMUSG00000023094.14 ENSMUSG00000023094 ENSMUST00000153289 Msrb2 protein_coding Interval_95382 chr2 107479513 107479959 + 0 NA Intergenic Intergenic 120803 ENSMUSG00000052005.8 ENSMUSG00000052005 ENSMUST00000090043 Gm9864 pseudogene Interval_87980 chr19 57545903 57546493 + 0 NA Intergenic Intergenic -1975 ENSMUSG00000117770.1 ENSMUSG00000117770 ENSMUST00000235373 Gm50285 lincRNA Interval_147165 chr7 63986318 63987295 + 0 NA Intergenic Intergenic -20963 ENSMUSG00000108393.1 ENSMUSG00000108393 ENSMUST00000206557 Gm32633 lincRNA Interval_136177 chr6 51767760 51768479 + 0 NA Intergenic Intergenic -57038 ENSMUSG00000108145.1 ENSMUSG00000108145 ENSMUST00000203781 Gm38811 lincRNA Interval_29849 chr11 87261471 87261996 + 0 NA intron (ENSMUSG00000046442.4, intron 1 of 3) protein_coding-intron (ENSMUSG00000046442.4, intron 1 of 6) -42940 ENSMUSG00000080976.1 ENSMUSG00000080976 ENSMUST00000118128 Gm11490 processed_pseudogene Interval_170421 chr9 107814631 107815185 + 0 NA intron (ENSMUSG00000032582.14, intron 2 of 2) protein_coding-intron (ENSMUSG00000032582.14, intron 6 of 20) 5104 ENSMUSG00000102670.1 ENSMUSG00000102670 ENSMUST00000193842 Gm37436 TEC Interval_19161 chr10 95229567 95229773 + 0 NA intron (ENSMUSG00000045867.10, intron 2 of 2) protein_coding-intron (ENSMUSG00000045867.10, intron 2 of 2) 69309 ENSMUSG00000112682.1 ENSMUSG00000112682 ENSMUST00000220149 Gm48874 TEC Interval_80669 chr18 46139185 46139654 + 0 NA Intergenic Intergenic -26160 ENSMUSG00000104009.1 ENSMUSG00000104009 ENSMUST00000193986 Gm38337 TEC Interval_16979 chr10 70262286 70263126 + 0 NA intron (ENSMUSG00000037762.6, intron 2 of 5) protein_coding-intron (ENSMUSG00000037762.6, intron 2 of 5) -4273 ENSMUSG00000037762.6 ENSMUSG00000037762 ENSMUST00000155933 Slc16a9 protein_coding Interval_3165 chr1 54361229 54361495 + 0 NA intron (ENSMUSG00000025983.11, intron 6 of 11) protein_coding-intron (ENSMUSG00000025983.11, intron 22 of 27) 31370 ENSMUSG00000025983.11 ENSMUSG00000025983 ENSMUST00000159682 Ccdc150 protein_coding Interval_62459 chr15 93161637 93162779 + 0 NA Intergenic Intergenic -24666 ENSMUSG00000116124.1 ENSMUSG00000116124 ENSMUST00000230014 Gm49420 processed_transcript Interval_141183 chr6 125457581 125458204 + 0 NA Intergenic Intergenic 5132 ENSMUSG00000030342.8 ENSMUSG00000030342 ENSMUST00000140024 Cd9 protein_coding Interval_83058 chr18 80933479 80934219 + 0 NA exon (ENSMUSG00000024566.10, exon 1 of 30) protein_coding-exon (ENSMUSG00000024566.10, exon 1 of 30) -8044 ENSMUSG00000092973.1 ENSMUSG00000092973 ENSMUST00000175232 Gm25071 miRNA Interval_152133 chr7 129830194 129830653 + 0 NA Intergenic Intergenic -2623 ENSMUSG00000108576.1 ENSMUSG00000108576 ENSMUST00000206447 Gm44778 lincRNA Interval_38332 chr12 77324139 77324515 + 0 NA intron (ENSMUSG00000021065.16, intron 3 of 7) protein_coding-intron (ENSMUSG00000021065.16, intron 3 of 11) -64537 ENSMUSG00000021065.16 ENSMUSG00000021065 ENSMUST00000218851 Fut8 protein_coding Interval_74704 chr17 56068678 56069804 + 0 NA TTS (ENSMUSG00000019578.11) protein_coding-TTS (ENSMUSG00000019578.11) 3199 ENSMUSG00000019578.11 ENSMUSG00000019578 ENSMUST00000139371 Ubxn6 protein_coding Interval_28339 chr11 75281710 75282957 + 0 NA Intergenic Intergenic 36275 ENSMUSG00000106179.1 ENSMUSG00000106179 ENSMUST00000198372 Gm47300 miRNA Interval_55616 chr14 95961742 95961965 + 0 NA Intergenic Intergenic 20847 ENSMUSG00000115603.1 ENSMUSG00000115603 ENSMUST00000226824 Gm19099 processed_pseudogene Interval_25235 chr11 45749220 45749492 + 0 NA Intergenic Intergenic -58731 ENSMUSG00000086686.1 ENSMUSG00000086686 ENSMUST00000137002 F630206G17Rik processed_transcript Interval_104708 chr3 69596060 69596729 + 0 NA intron (ENSMUSG00000043300.2, intron 1 of 2) protein_coding-intron (ENSMUSG00000043300.2, intron 1 of 2) 2566 ENSMUSG00000043300.2 ENSMUSG00000043300 ENSMUST00000061826 B3galnt1 protein_coding Interval_115367 chr4 98231678 98232137 + 0 NA Intergenic Intergenic 3383 ENSMUSG00000082388.1 ENSMUSG00000082388 ENSMUST00000121092 Gm12692 processed_pseudogene Interval_164597 chr9 39776722 39776917 + 0 NA intron (ENSMUSG00000095903.3, intron 2 of 3) protein_coding-intron (ENSMUSG00000095903.3, intron 2 of 3) 6434 ENSMUSG00000095903.3 ENSMUSG00000095903 ENSMUST00000075928 Olfr968 protein_coding Interval_25147 chr11 44546035 44546655 + 0 NA intron (ENSMUSG00000019189.13, intron 4 of 4) protein_coding-intron (ENSMUSG00000019189.13, intron 4 of 10) -10486 ENSMUSG00000019189.13 ENSMUSG00000019189 ENSMUST00000129676 Rnf145 protein_coding Interval_47247 chr13 79529431 79529610 + 0 NA Intergenic Intergenic 74550 ENSMUSG00000096005.1 ENSMUSG00000096005 ENSMUST00000179499 Gm24863 snRNA Interval_144384 chr7 24825128 24825400 + 0 NA intron (ENSMUSG00000011350.15, intron 2 of 10) processed_transcript-intron (ENSMUSG00000011350.15, intron 3 of 11) 6469 ENSMUSG00000011350.15 ENSMUSG00000011350 ENSMUST00000155799 Gm5893 processed_transcript Interval_24833 chr11 40050444 40051789 + 0 NA intron (ENSMUSG00000085301.1, intron 2 of 7) lincRNA-intron (ENSMUSG00000085301.1, intron 2 of 7) 42922 ENSMUSG00000085301.1 ENSMUSG00000085301 ENSMUST00000130945 Gm12132 lincRNA Interval_23837 chr11 26961453 26963589 + 0 NA Intergenic Intergenic -89176 ENSMUSG00000083895.1 ENSMUSG00000083895 ENSMUST00000120189 Gm12074 processed_pseudogene Interval_60971 chr15 78394833 78395040 + 0 NA intron (ENSMUSG00000062154.14, intron 1 of 2) protein_coding-intron (ENSMUSG00000062154.14, intron 1 of 5) 966 ENSMUSG00000062154.14 ENSMUSG00000062154 ENSMUST00000229878 Tex33 protein_coding Interval_144950 chr7 29067786 29068290 + 0 NA TTS (ENSMUSG00000030592.18) protein_coding-TTS (ENSMUSG00000030592.18) -3599 ENSMUSG00000097079.2 ENSMUSG00000097079 ENSMUST00000209109 Gm26604 antisense Interval_173918 chrX 111665134 111665396 + 0 NA intron (ENSMUSG00000034551.12, intron 1 of 8) protein_coding-intron (ENSMUSG00000034551.12, intron 1 of 8) 31814 ENSMUSG00000034551.12 ENSMUSG00000034551 ENSMUST00000038472 Hdx protein_coding Interval_42609 chr13 16717371 16718274 + 0 NA Intergenic Intergenic -78332 ENSMUSG00000113862.1 ENSMUSG00000113862 ENSMUST00000221660 Gm7537 processed_pseudogene Interval_128625 chr5 114365354 114366435 + 0 NA TTS (ENSMUSG00000066952.11) protein_coding-TTS (ENSMUSG00000066952.11) 4313 ENSMUSG00000001098.15 ENSMUSG00000001098 ENSMUST00000123538 Kctd10 protein_coding Interval_137606 chr6 75250552 75250808 + 0 NA Intergenic Intergenic 47379 ENSMUSG00000107951.1 ENSMUSG00000107951 ENSMUST00000204734 Gm6210 processed_pseudogene Interval_73241 chr17 35731210 35732726 + 0 NA Intergenic Intergenic 7838 ENSMUSG00000092219.1 ENSMUSG00000092219 ENSMUST00000173840 Gm20443 lincRNA Interval_112799 chr4 45071333 45072804 + 0 NA intron (ENSMUSG00000048232.12, intron 1 of 10) protein_coding-intron (ENSMUSG00000048232.12, intron 1 of 10) -13450 ENSMUSG00000048232.12 ENSMUSG00000048232 ENSMUST00000155583 Fbxo10 protein_coding Interval_145059 chr7 29805014 29805654 + 0 NA Intergenic Intergenic -5538 ENSMUSG00000109565.1 ENSMUSG00000109565 ENSMUST00000208224 Gm6579 unprocessed_pseudogene Interval_95846 chr2 117217478 117218104 + 0 NA Intergenic Intergenic -23092 ENSMUSG00000081842.1 ENSMUSG00000081842 ENSMUST00000118467 Rap1a-ps2 processed_pseudogene Interval_84192 chr19 8669306 8669481 + 0 NA intron (ENSMUSG00000032773.9, intron 2 of 2) protein_coding-intron (ENSMUSG00000032773.9, intron 1 of 1) 5604 ENSMUSG00000032773.9 ENSMUSG00000032773 ENSMUST00000163785 Chrm1 protein_coding Interval_117138 chr4 119923559 119923856 + 0 NA intron (ENSMUSG00000028634.17, intron 1 of 1) protein_coding-intron (ENSMUSG00000028634.17, intron 1 of 8) -109059 ENSMUSG00000028634.17 ENSMUSG00000028634 ENSMUST00000166542 Hivep3 protein_coding Interval_134319 chr6 25078031 25078244 + 0 NA TTS (ENSMUSG00000087867.1) snoRNA-TTS (ENSMUSG00000087867.1) 766 ENSMUSG00000087867.1 ENSMUSG00000087867 ENSMUST00000157242 Gm24443 snoRNA Interval_166573 chr9 61000781 61001159 + 0 NA Intergenic Intergenic -16099 ENSMUSG00000111290.1 ENSMUSG00000111290 ENSMUST00000216854 Gm5122 lincRNA Interval_160553 chr8 110626679 110627341 + 0 NA intron (ENSMUSG00000010936.11, intron 1 of 18) protein_coding-intron (ENSMUSG00000010936.11, intron 1 of 18) -18570 ENSMUSG00000010936.11 ENSMUSG00000010936 ENSMUST00000213015 Vac14 protein_coding Interval_29931 chr11 87839922 87840127 + 0 NA Intergenic Intergenic -13641 ENSMUSG00000034121.12 ENSMUSG00000034121 ENSMUST00000135369 Mks1 protein_coding Interval_158577 chr8 84595783 84596086 + 0 NA intron (ENSMUSG00000034656.18, intron 33 of 48) protein_coding-intron (ENSMUSG00000034656.18, intron 31 of 46) 21250 ENSMUSG00000086067.1 ENSMUSG00000086067 ENSMUST00000127527 Gm16183 antisense Interval_126604 chr5 90757594 90760064 + 0 NA promoter-TSS (ENSMUSG00000029371.7) protein_coding-promoter-TSS (ENSMUSG00000029371.7) -531 ENSMUSG00000029371.7 ENSMUSG00000029371 ENSMUST00000031318 Cxcl5 protein_coding Interval_122733 chr5 24967702 24967978 + 0 NA intron (ENSMUSG00000028944.14, intron 3 of 15) protein_coding-intron (ENSMUSG00000028944.14, intron 3 of 15) -18002 ENSMUSG00000059631.6 ENSMUSG00000059631 ENSMUST00000075081 1500035N22Rik lincRNA Interval_32783 chr11 110540378 110540606 + 0 NA Intergenic Intergenic -4015 ENSMUSG00000085985.1 ENSMUSG00000085985 ENSMUST00000144689 Gm11682 lincRNA Interval_166107 chr9 56738090 56738487 + 0 NA intron (ENSMUSG00000049556.5, intron 2 of 3) protein_coding-intron (ENSMUSG00000049556.5, intron 2 of 3) 30835 ENSMUSG00000049556.5 ENSMUSG00000049556 ENSMUST00000210995 Lingo1 protein_coding Interval_25797 chr11 51785555 51786781 + 0 NA intron (ENSMUSG00000020386.5, intron 4 of 6) protein_coding-intron (ENSMUSG00000020386.5, intron 4 of 6) 22474 ENSMUSG00000020386.5 ENSMUSG00000020386 ENSMUST00000136363 Sar1b protein_coding Interval_112055 chr4 33663882 33665743 + 0 NA Intergenic Intergenic 16679 ENSMUSG00000077397.1 ENSMUSG00000077397 ENSMUST00000104209 Gm24341 snoRNA Interval_161148 chr8 117795051 117795690 + 0 NA intron (ENSMUSG00000031843.2, intron 2 of 2) protein_coding-intron (ENSMUSG00000031843.2, intron 2 of 4) -2153 ENSMUSG00000031843.2 ENSMUSG00000031843 ENSMUST00000211818 Mphosph6 protein_coding Interval_103028 chr3 34617708 34618145 + 0 NA intron (ENSMUSG00000105265.4, intron 3 of 4) processed_transcript-intron (ENSMUSG00000105265.4, intron 4 of 4) -15678 ENSMUSG00000105222.1 ENSMUSG00000105222 ENSMUST00000199244 Gm42205 lincRNA Interval_75708 chr17 70790766 70791538 + 0 NA intron (ENSMUSG00000003279.17, intron 7 of 9) protein_coding-intron (ENSMUSG00000003279.17, intron 12 of 14) 14907 ENSMUSG00000117231.1 ENSMUSG00000117231 ENSMUST00000233879 Gm41609 processed_transcript Interval_59423 chr15 53014100 53014709 + 0 NA Intergenic Intergenic 93464 ENSMUSG00000061731.9 ENSMUSG00000061731 ENSMUST00000140798 Ext1 protein_coding Interval_62810 chr15 97143887 97144872 + 0 NA Intergenic Intergenic 22865 ENSMUSG00000116295.1 ENSMUSG00000116295 ENSMUST00000229491 Gm32885 lincRNA Interval_27658 chr11 69339850 69341268 + 0 NA promoter-TSS (ENSMUSG00000043419.11) protein_coding-promoter-TSS (ENSMUSG00000043419.11) -212 ENSMUSG00000043419.11 ENSMUSG00000043419 ENSMUST00000151617 Rnf227 protein_coding Interval_103014 chr3 34469791 34470584 + 0 NA intron (ENSMUSG00000105265.4, intron 2 of 2) processed_transcript-intron (ENSMUSG00000105265.4, intron 2 of 4) 12020 ENSMUSG00000099437.1 ENSMUSG00000099437 ENSMUST00000188411 Gm29135 lincRNA Interval_169970 chr9 103325167 103326228 + 0 NA exon (ENSMUSG00000032555.10, exon 13 of 28) protein_coding-exon (ENSMUSG00000032555.10, exon 13 of 28) -18239 ENSMUSG00000032555.10 ENSMUSG00000032555 ENSMUST00000185972 Topbp1 protein_coding Interval_59779 chr15 59196731 59197759 + 0 NA Intergenic Intergenic -13663 ENSMUSG00000025922.9 ENSMUSG00000025922 ENSMUST00000027054 Rpl7-ps8 processed_pseudogene Interval_130952 chr5 134232251 134233176 + 0 NA Intergenic Intergenic -10491 ENSMUSG00000015950.13 ENSMUSG00000015950 ENSMUST00000126934 Ncf1 protein_coding Interval_1364 chr1 20997120 20998035 + 0 NA exon (ENSMUSG00000041779.5, exon 11 of 11) protein_coding-exon (ENSMUSG00000041779.5, exon 11 of 11) 45951 ENSMUSG00000041809.5 ENSMUSG00000041809 ENSMUST00000038447 Efhc1 protein_coding Interval_143157 chr7 3801701 3803567 + 0 NA Intergenic Intergenic -3003 ENSMUSG00000080917.2 ENSMUSG00000080917 ENSMUST00000120641 Gm15925 unprocessed_pseudogene Interval_77487 chr17 90031830 90032808 + 0 NA Intergenic Intergenic -55534 ENSMUSG00000117635.1 ENSMUSG00000117635 ENSMUST00000234603 Gm41653 lincRNA Interval_27954 chr11 71434705 71434908 + 0 NA intron (ENSMUSG00000085230.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000085230.1, intron 1 of 1) 1374 ENSMUSG00000085230.1 ENSMUSG00000085230 ENSMUST00000152249 Gm16013 lincRNA Interval_59911 chr15 61731974 61732157 + 0 NA intron (ENSMUSG00000116031.1, intron 2 of 4) lincRNA-intron (ENSMUSG00000116031.1, intron 2 of 4) 42386 ENSMUSG00000116031.1 ENSMUSG00000116031 ENSMUST00000230725 D030024E09Rik lincRNA Interval_15574 chr10 51665772 51666207 + 0 NA promoter-TSS (ENSMUSG00000112878.1) lincRNA-promoter-TSS (ENSMUSG00000112878.1) -1000 ENSMUSG00000112878.1 ENSMUSG00000112878 ENSMUST00000219017 1700042O05Rik lincRNA Interval_126854 chr5 95687863 95688112 + 0 NA Intergenic Intergenic 25682 ENSMUSG00000107213.1 ENSMUSG00000107213 ENSMUST00000201462 Gm3302 unprocessed_pseudogene Interval_134983 chr6 34322860 34323137 + 0 NA exon (ENSMUSG00000086762.1, exon 2 of 2) antisense-exon (ENSMUSG00000086762.1, exon 2 of 2) -15541 ENSMUSG00000001642.18 ENSMUSG00000001642 ENSMUST00000154655 Akr1b3 protein_coding Interval_126949 chr5 98168972 98169682 + 0 NA intron (ENSMUSG00000035456.9, intron 1 of 4) protein_coding-intron (ENSMUSG00000035456.9, intron 1 of 4) 2129 ENSMUSG00000035456.9 ENSMUSG00000035456 ENSMUST00000112959 Prdm8 protein_coding Interval_83499 chr18 87756187 87757596 + 0 NA exon (ENSMUSG00000069324.6, exon 1 of 1) protein_coding-exon (ENSMUSG00000069324.6, exon 1 of 1) 605 ENSMUSG00000069324.6 ENSMUSG00000069324 ENSMUST00000091776 Gm5096 protein_coding Interval_168810 chr9 87346577 87346841 + 0 NA Intergenic Intergenic -47541 ENSMUSG00000099385.1 ENSMUSG00000099385 ENSMUST00000188230 Gm9540 processed_pseudogene Interval_13425 chr10 18113605 18113781 + 0 NA promoter-TSS (ENSMUSG00000019854.17) protein_coding-promoter-TSS (ENSMUSG00000019854.17) 9481 ENSMUSG00000019854.17 ENSMUSG00000019854 ENSMUST00000150533 Reps1 protein_coding Interval_150 GL456392.1 22097 23275 + 0 NA NA NA NA NA Interval_72431 chr17 29768709 29770020 + 0 NA Intergenic Intergenic 50023 ENSMUSG00000117489.1 ENSMUSG00000117489 ENSMUST00000234919 Gm50016 lincRNA Interval_160573 chr8 110786104 110786926 + 0 NA intron (ENSMUSG00000031750.15, intron 1 of 1) protein_coding-intron (ENSMUSG00000031750.15, intron 1 of 6) -19123 ENSMUSG00000085068.1 ENSMUSG00000085068 ENSMUST00000157018 Gm15895 antisense Interval_123821 chr5 35755191 35755815 + 0 NA Intergenic Intergenic -15516 ENSMUSG00000036553.16 ENSMUSG00000036553 ENSMUST00000154118 Sh3tc1 protein_coding Interval_52004 chr14 34554724 34555700 + 0 NA intron (ENSMUSG00000021798.14, intron 8 of 13) protein_coding-intron (ENSMUSG00000021798.14, intron 8 of 13) -32411 ENSMUSG00000021797.2 ENSMUSG00000021797 ENSMUST00000022325 9230112D13Rik protein_coding Interval_135825 chr6 47594180 47595944 + 0 NA promoter-TSS (ENSMUSG00000029687.16) protein_coding-promoter-TSS (ENSMUSG00000029687.16) -4 ENSMUSG00000029687.16 ENSMUSG00000029687 ENSMUST00000170327 Ezh2 protein_coding Interval_111360 chr4 19656109 19656741 + 0 NA intron (ENSMUSG00000041058.15, intron 8 of 24) protein_coding-intron (ENSMUSG00000041058.15, intron 6 of 22) 50974 ENSMUSG00000078772.2 ENSMUSG00000078772 ENSMUST00000108250 Gm12353 protein_coding Interval_102197 chr3 19385640 19385835 + 0 NA Intergenic Intergenic 54964 ENSMUSG00000089149.1 ENSMUSG00000089149 ENSMUST00000158524 Gm22282 misc_RNA Interval_150585 chr7 112643703 112645471 + 0 NA intron (ENSMUSG00000085945.3, intron 2 of 3) bidirectional_promoter_lncRNA-intron (ENSMUSG00000085945.3, intron 2 of 3) -8195 ENSMUSG00000109611.1 ENSMUSG00000109611 ENSMUST00000211452 Gm45473 processed_pseudogene Interval_101326 chr2 180457620 180458208 + 0 NA intron (ENSMUSG00000038963.15, intron 1 of 12) protein_coding-intron (ENSMUSG00000038963.15, intron 1 of 11) 1580 ENSMUSG00000038963.15 ENSMUSG00000038963 ENSMUST00000128367 Slco4a1 protein_coding Interval_24135 chr11 30662669 30663161 + 0 NA Intergenic Intergenic -13328 ENSMUSG00000060923.5 ENSMUSG00000060923 ENSMUST00000074613 Acyp2 protein_coding Interval_20801 chr10 121055570 121055824 + 0 NA intron (ENSMUSG00000020218.11, intron 2 of 9) protein_coding-intron (ENSMUSG00000020218.11, intron 2 of 9) 21673 ENSMUSG00000020218.11 ENSMUSG00000020218 ENSMUST00000145691 Wif1 protein_coding Interval_32469 chr11 107707837 107708410 + 0 NA intron (ENSMUSG00000020722.5, intron 1 of 3) protein_coding-intron (ENSMUSG00000020722.5, intron 1 of 3) 8399 ENSMUSG00000020722.5 ENSMUSG00000020722 ENSMUST00000021065 Cacng1 protein_coding Interval_92169 chr2 55234718 55235507 + 0 NA Intergenic Intergenic -56953 ENSMUSG00000082301.1 ENSMUSG00000082301 ENSMUST00000117686 Gm14032 processed_pseudogene Interval_59999 chr15 63649035 63649286 + 0 NA intron (ENSMUSG00000115520.2, intron 2 of 8) lincRNA-intron (ENSMUSG00000115520.2, intron 2 of 8) 17463 ENSMUSG00000095812.1 ENSMUSG00000095812 ENSMUST00000179326 Gm5473 processed_pseudogene Interval_21253 chr10 127497277 127497470 + 0 NA intron (ENSMUSG00000025404.15, intron 3 of 3) protein_coding-intron (ENSMUSG00000025404.15, intron 22 of 23) -9852 ENSMUSG00000040287.9 ENSMUSG00000040287 ENSMUST00000162302 Stac3 protein_coding Interval_101374 chr2 180885403 180885685 + 0 NA intron (ENSMUSG00000086166.1, intron 1 of 3) lincRNA-intron (ENSMUSG00000086166.1, intron 1 of 3) 4116 ENSMUSG00000086166.1 ENSMUSG00000086166 ENSMUST00000137629 Gm14342 lincRNA Interval_150795 chr7 114672942 114673154 + 0 NA Intergenic Intergenic 26596 ENSMUSG00000108349.1 ENSMUSG00000108349 ENSMUST00000206729 Gm18599 processed_pseudogene Interval_161614 chr8 121578193 121579619 + 0 NA promoter-TSS (ENSMUSG00000052934.14) protein_coding-promoter-TSS (ENSMUSG00000052934.14) -159 ENSMUSG00000052934.14 ENSMUSG00000052934 ENSMUST00000181663 Fbxo31 protein_coding Interval_118063 chr4 128711213 128712156 + 0 NA intron (ENSMUSG00000028796.17, intron 1 of 2) protein_coding-intron (ENSMUSG00000028796.17, intron 6 of 14) 1520 ENSMUSG00000028796.17 ENSMUSG00000028796 ENSMUST00000134421 Phc2 protein_coding Interval_88779 chr2 10602442 10602676 + 0 NA Intergenic Intergenic 84404 ENSMUSG00000080594.1 ENSMUSG00000080594 ENSMUST00000116944 Mir669h miRNA Interval_87565 chr19 53482117 53482919 + 0 NA promoter-TSS (ENSMUSG00000118378.1) TEC-promoter-TSS (ENSMUSG00000118378.1) -976 ENSMUSG00000118378.1 ENSMUSG00000118378 ENSMUST00000235451 Gm50393 TEC Interval_14957 chr10 41460173 41461560 + 0 NA intron (ENSMUSG00000019826.11, intron 5 of 5) protein_coding-intron (ENSMUSG00000019826.11, intron 5 of 6) 10431 ENSMUSG00000019826.11 ENSMUSG00000019826 ENSMUST00000215881 Zbtb24 protein_coding Interval_137919 chr6 83366471 83367169 + 0 NA exon (ENSMUSG00000034832.15, exon 11 of 11) protein_coding-exon (ENSMUSG00000034832.15, exon 11 of 11) 15780 ENSMUSG00000045160.14 ENSMUSG00000045160 ENSMUST00000148875 Bola3 protein_coding Interval_48051 chr13 95582011 95582231 + 0 NA Intergenic Intergenic -3145 ENSMUSG00000113969.1 ENSMUSG00000113969 ENSMUST00000221593 Gm48731 processed_pseudogene Interval_169356 chr9 96681537 96681863 + 0 NA Intergenic Intergenic -24128 ENSMUSG00000102097.1 ENSMUSG00000102097 ENSMUST00000186821 A930006L05Rik antisense Interval_82308 chr18 70545297 70545902 + 0 NA Intergenic Intergenic 28813 ENSMUSG00000098721.1 ENSMUSG00000098721 ENSMUST00000184246 Mir6357 miRNA Interval_34427 chr12 4094655 4095141 + 0 NA intron (ENSMUSG00000020657.16, intron 2 of 2) protein_coding-intron (ENSMUSG00000020657.16, intron 3 of 6) 6316 ENSMUSG00000020657.16 ENSMUSG00000020657 ENSMUST00000220273 Dnajc27 protein_coding Interval_100374 chr2 168701742 168702532 + 0 NA intron (ENSMUSG00000027546.15, intron 4 of 27) protein_coding-intron (ENSMUSG00000027546.15, intron 4 of 27) 39827 ENSMUSG00000027546.15 ENSMUSG00000027546 ENSMUST00000156555 Atp9a protein_coding Interval_87326 chr19 47705003 47706286 + 0 NA Intergenic Intergenic -5222 ENSMUSG00000088525.1 ENSMUSG00000088525 ENSMUST00000157900 Gm26085 snoRNA Interval_155795 chr8 38279308 38279501 + 0 NA intron (ENSMUSG00000039539.13, intron 1 of 9) protein_coding-intron (ENSMUSG00000039539.13, intron 1 of 7) -27202 ENSMUSG00000065457.3 ENSMUSG00000065457 ENSMUST00000083523 Mir383 miRNA Interval_52967 chr14 52355968 52357962 + 0 NA promoter-TSS (ENSMUSG00000095030.2) protein_coding-promoter-TSS (ENSMUSG00000095030.2) -557 ENSMUSG00000095030.2 ENSMUSG00000095030 ENSMUST00000089739 Olfr1513 protein_coding Interval_110820 chr4 8725264 8725707 + 0 NA intron (ENSMUSG00000041235.12, intron 1 of 1) protein_coding-intron (ENSMUSG00000041235.12, intron 1 of 37) -51903 ENSMUSG00000082122.1 ENSMUSG00000082122 ENSMUST00000120923 Gm11809 processed_pseudogene Interval_9534 chr1 158844482 158845083 + 0 NA intron (ENSMUSG00000073530.11, intron 8 of 21) protein_coding-intron (ENSMUSG00000073530.11, intron 1 of 5) 115599 ENSMUSG00000073530.11 ENSMUSG00000073530 ENSMUST00000159892 Pappa2 protein_coding Interval_149245 chr7 96643618 96644618 + 0 NA promoter-TSS (ENSMUSG00000048078.16) protein_coding-promoter-TSS (ENSMUSG00000048078.16) -15049 ENSMUSG00000085792.2 ENSMUSG00000085792 ENSMUST00000155217 Gm15414 antisense Interval_11781 chr1 185386524 185387795 + 0 NA intron (ENSMUSG00000026615.14, intron 12 of 19) protein_coding-intron (ENSMUSG00000026615.14, intron 12 of 31) 19569 ENSMUSG00000026615.14 ENSMUSG00000026615 ENSMUST00000192049 Eprs protein_coding Interval_152437 chr7 133024808 133025878 + 0 NA TTS (ENSMUSG00000030970.16) protein_coding-TTS (ENSMUSG00000030970.16) -41791 ENSMUSG00000085663.1 ENSMUSG00000085663 ENSMUST00000131085 Gm15718 antisense Interval_11540 chr1 182560021 182560947 + 0 NA Intergenic Intergenic -4523 ENSMUSG00000038599.14 ENSMUSG00000038599 ENSMUST00000192671 Capn8 protein_coding Interval_163837 chr9 27040135 27040634 + 0 NA intron (ENSMUSG00000035024.16, intron 2 of 8) protein_coding-intron (ENSMUSG00000035024.16, intron 3 of 35) 10205 ENSMUSG00000035024.16 ENSMUSG00000035024 ENSMUST00000214270 Ncapd3 protein_coding Interval_143926 chr7 17902791 17904283 + 0 NA intron (ENSMUSG00000078793.10, intron 4 of 9) protein_coding-intron (ENSMUSG00000078793.10, intron 4 of 9) 31770 ENSMUSG00000078793.10 ENSMUSG00000078793 ENSMUST00000072381 Gm5155 protein_coding Interval_82338 chr18 71051574 71052085 + 0 NA Intergenic Intergenic -144178 ENSMUSG00000118271.1 ENSMUSG00000118271 ENSMUST00000236972 Gm50262 processed_pseudogene Interval_64560 chr16 13323418 13324164 + 0 NA intron (ENSMUSG00000009569.14, intron 2 of 4) protein_coding-intron (ENSMUSG00000009569.14, intron 2 of 16) -34630 ENSMUSG00000009569.14 ENSMUSG00000009569 ENSMUST00000149359 Mrtfb protein_coding Interval_132508 chr5 145630562 145630811 + 0 NA intron (ENSMUSG00000106040.1, intron 2 of 4) unprocessed_pseudogene-intron (ENSMUSG00000106040.1, intron 2 of 4) 3307 ENSMUSG00000106040.1 ENSMUSG00000106040 ENSMUST00000196626 Cyp3a63-ps unprocessed_pseudogene Interval_137951 chr6 83693566 83694229 + 0 NA intron (ENSMUSG00000085794.5, intron 5 of 5) antisense-intron (ENSMUSG00000085794.5, intron 5 of 5) -8594 ENSMUSG00000099263.1 ENSMUSG00000099263 ENSMUST00000184900 Gm27772 misc_RNA Interval_118174 chr4 129359721 129360498 + 0 NA exon (ENSMUSG00000028807.2, exon 3 of 5) protein_coding-exon (ENSMUSG00000028807.2, exon 3 of 5) 18007 ENSMUSG00000028807.2 ENSMUSG00000028807 ENSMUST00000030610 Zbtb8a protein_coding Interval_44154 chr13 41280452 41281111 + 0 NA Intergenic Intergenic -6804 ENSMUSG00000090853.1 ENSMUSG00000090853 ENSMUST00000163881 Gm17364 protein_coding Interval_36207 chr12 39280282 39280602 + 0 NA Intergenic Intergenic 71550 ENSMUSG00000113896.1 ENSMUSG00000113896 ENSMUST00000220568 Gm18591 processed_pseudogene Interval_88638 chr2 8112832 8113049 + 0 NA Intergenic Intergenic 34925 ENSMUSG00000083269.1 ENSMUSG00000083269 ENSMUST00000118295 Gm13254 processed_pseudogene Interval_167071 chr9 65041084 65041843 + 0 NA intron (ENSMUSG00000032393.15, intron 2 of 18) protein_coding-intron (ENSMUSG00000032393.15, intron 3 of 20) 8685 ENSMUSG00000032393.15 ENSMUSG00000032393 ENSMUST00000214678 Dpp8 protein_coding Interval_158687 chr8 85255533 85256194 + 0 NA Intergenic Intergenic 29875 ENSMUSG00000051952.5 ENSMUSG00000051952 ENSMUST00000070849 Olfr371 protein_coding Interval_114260 chr4 70277971 70278554 + 0 NA intron (ENSMUSG00000039298.16, intron 21 of 36) protein_coding-intron (ENSMUSG00000039298.16, intron 18 of 33) -28889 ENSMUSG00000080902.1 ENSMUSG00000080902 ENSMUST00000120944 Ywhaq-ps3 transcribed_processed_pseudogene Interval_2867 chr1 46944704 46945048 + 0 NA Intergenic Intergenic -47997 ENSMUSG00000100160.1 ENSMUSG00000100160 ENSMUST00000185210 Gm28527 processed_pseudogene Interval_38001 chr12 73732079 73732352 + 0 NA intron (ENSMUSG00000021108.18, intron 11 of 14) protein_coding-intron (ENSMUSG00000021108.18, intron 10 of 13) -61268 ENSMUSG00000113321.1 ENSMUSG00000113321 ENSMUST00000222997 Gm8075 lincRNA Interval_104483 chr3 66445959 66446971 + 0 NA Intergenic Intergenic 81926 ENSMUSG00000117623.1 ENSMUSG00000117623 ENSMUST00000234873 Gm50014 unitary_pseudogene Interval_82559 chr18 75149231 75149483 + 0 NA intron (ENSMUSG00000035765.10, intron 13 of 16) protein_coding-intron (ENSMUSG00000035765.10, intron 13 of 16) 23932 ENSMUSG00000035765.10 ENSMUSG00000035765 ENSMUST00000236840 Dym protein_coding Interval_105174 chr3 83209640 83210393 + 0 NA intron (ENSMUSG00000102692.1, intron 1 of 19) protein_coding-intron (ENSMUSG00000102692.1, intron 1 of 19) -80770 ENSMUSG00000074517.2 ENSMUSG00000074517 ENSMUST00000047876 Gm10710 lincRNA Interval_2114 chr1 36518861 36520593 + 0 NA TTS (ENSMUSG00000001138.13) protein_coding-TTS (ENSMUSG00000001138.13) 1158 ENSMUSG00000001138.13 ENSMUSG00000001138 ENSMUST00000135100 Cnnm3 protein_coding Interval_143319 chr7 5277893 5278119 + 0 NA promoter-TSS (ENSMUSG00000075906.1) snRNA-promoter-TSS (ENSMUSG00000075906.1) -556 ENSMUSG00000075906.1 ENSMUSG00000075906 ENSMUST00000101956 Gm23942 snRNA Interval_12838 chr10 6099760 6100593 + 0 NA Intergenic Intergenic -177790 ENSMUSG00000019775.17 ENSMUSG00000019775 ENSMUST00000019909 Rgs17 protein_coding Interval_44226 chr13 42446817 42447209 + 0 NA Intergenic Intergenic 25764 ENSMUSG00000113000.1 ENSMUSG00000113000 ENSMUST00000222369 Gm6049 processed_pseudogene Interval_93390 chr2 72683172 72683442 + 0 NA Intergenic Intergenic -20203 ENSMUSG00000085252.1 ENSMUSG00000085252 ENSMUST00000124829 8430437L04Rik lincRNA Interval_149539 chr7 99441571 99441800 + 0 NA promoter-TSS (ENSMUSG00000035314.10) protein_coding-promoter-TSS (ENSMUSG00000035314.10) 17572 ENSMUSG00000035314.10 ENSMUSG00000035314 ENSMUST00000208061 Gdpd5 protein_coding Interval_39481 chr12 88339817 88341904 + 0 NA promoter-TSS (ENSMUSG00000113490.1) processed_pseudogene-promoter-TSS (ENSMUSG00000113490.1) -86 ENSMUSG00000113490.1 ENSMUSG00000113490 ENSMUST00000222295 Gm18620 processed_pseudogene Interval_81096 chr18 53861588 53863132 + 0 NA exon (ENSMUSG00000073563.3, exon 1 of 13) protein_coding-exon (ENSMUSG00000073563.3, exon 1 of 13) 172 ENSMUSG00000073563.3 ENSMUSG00000073563 ENSMUST00000236399 Csnk1g3 protein_coding Interval_5301 chr1 87350866 87351515 + 0 NA intron (ENSMUSG00000048000.15, intron 2 of 3) protein_coding-intron (ENSMUSG00000048000.15, intron 2 of 28) -9629 ENSMUSG00000095281.1 ENSMUSG00000095281 ENSMUST00000178461 Gm22549 snRNA Interval_38885 chr12 83605917 83607112 + 0 NA Intergenic Intergenic -9692 ENSMUSG00000042628.8 ENSMUSG00000042628 ENSMUST00000223380 Zfyve1 protein_coding Interval_26797 chr11 60547888 60548081 + 0 NA intron (ENSMUSG00000042650.3, intron 2 of 3) protein_coding-intron (ENSMUSG00000042650.3, intron 2 of 3) 11603 ENSMUSG00000042650.3 ENSMUSG00000042650 ENSMUST00000044250 Alkbh5 protein_coding Interval_135955 chr6 49081827 49082043 + 0 NA promoter-TSS (ENSMUSG00000029815.12) protein_coding-promoter-TSS (ENSMUSG00000029815.12) -873 ENSMUSG00000107990.1 ENSMUSG00000107990 ENSMUST00000204877 Gm7890 processed_pseudogene Interval_31420 chr11 100574625 100576365 + 0 NA promoter-TSS (ENSMUSG00000006782.16) protein_coding-promoter-TSS (ENSMUSG00000006782.16) -29 ENSMUSG00000006782.16 ENSMUSG00000006782 ENSMUST00000147403 Cnp protein_coding Interval_93835 chr2 77333434 77335114 + 0 NA Intergenic Intergenic -1085 ENSMUSG00000082006.1 ENSMUSG00000082006 ENSMUST00000122325 Gm13649 processed_pseudogene Interval_56587 chr14 120531495 120531847 + 0 NA Intergenic Intergenic 53227 ENSMUSG00000051615.14 ENSMUSG00000051615 ENSMUST00000062117 Rap2a protein_coding Interval_124183 chr5 39480010 39480963 + 0 NA intron (ENSMUSG00000106741.3, intron 3 of 5) lincRNA-intron (ENSMUSG00000106741.3, intron 4 of 4) 22389 ENSMUSG00000106679.1 ENSMUSG00000106679 ENSMUST00000202881 Gm42524 lincRNA Interval_147171 chr7 64035742 64036413 + 0 NA intron (ENSMUSG00000108469.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000108469.1, intron 1 of 1) 4749 ENSMUSG00000108469.1 ENSMUSG00000108469 ENSMUST00000206525 Gm45054 lincRNA Interval_70369 chr17 9163587 9163788 + 0 NA intron (ENSMUSG00000097049.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000097049.1, intron 1 of 2) 4149 ENSMUSG00000097049.1 ENSMUSG00000097049 ENSMUST00000181618 6530411M01Rik lincRNA Interval_60571 chr15 75188941 75189375 + 0 NA Intergenic Intergenic 8509 ENSMUSG00000101140.1 ENSMUSG00000101140 ENSMUST00000188472 Gm28117 unprocessed_pseudogene Interval_41297 chr12 112560154 112560709 + 0 NA Intergenic Intergenic -43684 ENSMUSG00000054013.6 ENSMUSG00000054013 ENSMUST00000222836 Tmem179 protein_coding Interval_27042 chr11 62518675 62519398 + 0 NA Intergenic Intergenic -3705 ENSMUSG00000086636.1 ENSMUSG00000086636 ENSMUST00000143382 Gm12949 antisense Interval_70175 chr17 5975180 5976369 + 0 NA promoter-TSS (ENSMUSG00000023805.17) protein_coding-promoter-TSS (ENSMUSG00000023805.17) -32260 ENSMUSG00000023805.17 ENSMUSG00000023805 ENSMUST00000126881 Synj2 protein_coding Interval_3947 chr1 65009990 65010634 + 0 NA Intergenic Intergenic -8850 ENSMUSG00000077471.1 ENSMUSG00000077471 ENSMUST00000104283 Gm24788 snRNA Interval_4382 chr1 73620346 73620572 + 0 NA intron (ENSMUSG00000100301.6, intron 2 of 3) lincRNA-intron (ENSMUSG00000100301.6, intron 7 of 8) 91522 ENSMUSG00000100429.1 ENSMUSG00000100429 ENSMUST00000189178 Gm29186 lincRNA Interval_36348 chr12 41718381 41718625 + 0 NA intron (ENSMUSG00000056899.10, intron 5 of 5) protein_coding-intron (ENSMUSG00000056899.10, intron 6 of 6) 34109 ENSMUSG00000113438.1 ENSMUSG00000113438 ENSMUST00000221651 Gm47369 processed_pseudogene Interval_146363 chr7 45525642 45527099 + 0 NA promoter-TSS (ENSMUSG00000040435.12) protein_coding-promoter-TSS (ENSMUSG00000040435.12) -2601 ENSMUSG00000040435.12 ENSMUSG00000040435 ENSMUST00000167273 Ppp1r15a protein_coding Interval_18656 chr10 88843237 88843475 + 0 NA Intergenic Intergenic -16573 ENSMUSG00000004356.8 ENSMUSG00000004356 ENSMUST00000220439 Utp20 protein_coding Interval_41018 chr12 110643659 110644149 + 0 NA intron (ENSMUSG00000018707.13, intron 42 of 76) protein_coding-intron (ENSMUSG00000018707.13, intron 42 of 76) 3380 ENSMUSG00000018707.13 ENSMUSG00000018707 ENSMUST00000166323 Dync1h1 protein_coding Interval_141986 chr6 136375949 136376345 + 0 NA Intergenic Intergenic -7581 ENSMUSG00000083916.2 ENSMUSG00000083916 ENSMUST00000118247 Gm15476 processed_pseudogene Interval_107753 chr3 113184354 113184917 + 0 NA intron (ENSMUSG00000081506.1, intron 6 of 8) unprocessed_pseudogene-intron (ENSMUSG00000081506.1, intron 6 of 8) 22062 ENSMUSG00000081506.1 ENSMUSG00000081506 ENSMUST00000122117 Amy2-ps1 unprocessed_pseudogene Interval_90817 chr2 32775173 32776430 + 0 NA promoter-TSS (ENSMUSG00000053746.8) protein_coding-promoter-TSS (ENSMUSG00000053746.8) -15 ENSMUSG00000053746.8 ENSMUSG00000053746 ENSMUST00000138214 Ptrh1 protein_coding Interval_132293 chr5 143976617 143977078 + 0 NA intron (ENSMUSG00000075569.10, intron 6 of 9) protein_coding-intron (ENSMUSG00000075569.10, intron 16 of 20) 4144 ENSMUSG00000091351.1 ENSMUSG00000091351 ENSMUST00000167009 Gm17135 antisense Interval_70290 chr17 8257178 8257679 + 0 NA TTS (ENSMUSG00000040899.14) protein_coding-TTS (ENSMUSG00000040899.14) 12370 ENSMUSG00000040899.14 ENSMUSG00000040899 ENSMUST00000231545 Ccr6 protein_coding Interval_79117 chr18 24688184 24688753 + 0 NA intron (ENSMUSG00000039616.10, intron 10 of 11) protein_coding-intron (ENSMUSG00000039616.10, intron 10 of 14) -2186 ENSMUSG00000084472.1 ENSMUSG00000084472 ENSMUST00000122523 n-R5s23 rRNA Interval_130216 chr5 125010516 125012082 + 0 NA exon (ENSMUSG00000037962.7, exon 4 of 4) protein_coding-exon (ENSMUSG00000037962.7, exon 4 of 4) 7824 ENSMUSG00000037962.7 ENSMUSG00000037962 ENSMUST00000145946 Rflna protein_coding Interval_169 JH584304.1 78251 79454 + 0 NA NA NA NA NA Interval_41324 chr12 112849372 112850188 + 0 NA Intergenic Intergenic 18448 ENSMUSG00000021298.8 ENSMUSG00000021298 ENSMUST00000222776 Gpr132 protein_coding Interval_146421 chr7 45791852 45792749 + 0 NA intron (ENSMUSG00000062044.16, intron 7 of 15) protein_coding-intron (ENSMUSG00000062044.16, intron 8 of 15) 6920 ENSMUSG00000062044.16 ENSMUSG00000062044 ENSMUST00000211127 Lmtk3 protein_coding Interval_137537 chr6 72949520 72950450 + 0 NA Intergenic Intergenic -3251 ENSMUSG00000097569.2 ENSMUSG00000097569 ENSMUST00000180809 Gm26640 lincRNA Interval_28823 chr11 78535454 78536924 + 0 NA promoter-TSS (ENSMUSG00000017615.12) protein_coding-promoter-TSS (ENSMUSG00000017615.12) 143 ENSMUSG00000017615.12 ENSMUSG00000017615 ENSMUST00000108277 Tnfaip1 protein_coding Interval_171362 chr9 117046904 117047317 + 0 NA intron (ENSMUSG00000039607.17, intron 5 of 15) protein_coding-intron (ENSMUSG00000039607.17, intron 3 of 12) -12048 ENSMUSG00000092184.1 ENSMUSG00000092184 ENSMUST00000172565 Gm18489 processed_pseudogene Interval_170156 chr9 105659964 105660371 + 0 NA promoter-TSS (ENSMUSG00000032571.14) protein_coding-promoter-TSS (ENSMUSG00000032571.14) 13384 ENSMUSG00000084659.1 ENSMUSG00000084659 ENSMUST00000122710 Gm22720 snRNA Interval_75929 chr17 73156223 73157062 + 0 NA intron (ENSMUSG00000054469.14, intron 1 of 5) protein_coding-intron (ENSMUSG00000054469.14, intron 1 of 5) 30215 ENSMUSG00000054469.14 ENSMUSG00000054469 ENSMUST00000134149 Lclat1 protein_coding Interval_72251 chr17 28814197 28815136 + 0 NA exon (ENSMUSG00000063952.16, exon 4 of 13) protein_coding-exon (ENSMUSG00000063952.16, exon 4 of 13) 8091 ENSMUSG00000117301.1 ENSMUSG00000117301 ENSMUST00000233498 Gm35883 antisense Interval_123479 chr5 32798499 32798880 + 0 NA intron (ENSMUSG00000054280.14, intron 3 of 4) protein_coding-intron (ENSMUSG00000054280.14, intron 9 of 10) 2276 ENSMUSG00000105429.1 ENSMUSG00000105429 ENSMUST00000198236 Gm43692 TEC Interval_26785 chr11 60476931 60477172 + 0 NA exon (ENSMUSG00000042678.17, exon 2 of 66) protein_coding-exon (ENSMUSG00000042678.17, exon 2 of 66) -3294 ENSMUSG00000042678.17 ENSMUSG00000042678 ENSMUST00000122825 Myo15 protein_coding Interval_23247 chr11 20882430 20883584 + 0 NA Intergenic Intergenic -35126 ENSMUSG00000064671.1 ENSMUSG00000064671 ENSMUST00000082737 Gm22807 snoRNA Interval_169363 chr9 96713403 96716117 + 0 NA intron (ENSMUSG00000040433.16, intron 5 of 5) protein_coding-intron (ENSMUSG00000040433.16, intron 2 of 2) 8932 ENSMUSG00000102097.1 ENSMUSG00000102097 ENSMUST00000186821 A930006L05Rik antisense Interval_142600 chr6 143948893 143949144 + 0 NA intron (ENSMUSG00000041540.16, intron 7 of 13) protein_coding-intron (ENSMUSG00000041540.16, intron 7 of 14) 41849 ENSMUSG00000107796.1 ENSMUSG00000107796 ENSMUST00000204049 Gm44068 TEC Interval_2781 chr1 44820717 44821697 + 0 NA Intergenic Intergenic -17964 ENSMUSG00000100434.1 ENSMUSG00000100434 ENSMUST00000190083 Gm3489 processed_pseudogene Interval_96638 chr2 126706654 126707791 + 0 NA promoter-TSS (ENSMUSG00000027363.15) protein_coding-promoter-TSS (ENSMUSG00000027363.15) -106 ENSMUSG00000027363.15 ENSMUSG00000027363 ENSMUST00000110416 Usp8 protein_coding Interval_155386 chr8 33133053 33133415 + 0 NA Intergenic Intergenic 59062 ENSMUSG00000083557.1 ENSMUSG00000083557 ENSMUST00000119347 Gm6877 processed_pseudogene Interval_111848 chr4 31941687 31941908 + 0 NA Intergenic Intergenic -43870 ENSMUSG00000028284.13 ENSMUSG00000028284 ENSMUST00000131310 Map3k7 protein_coding Interval_54554 chr14 70645430 70645975 + 0 NA Intergenic Intergenic -3448 ENSMUSG00000022101.6 ENSMUSG00000022101 ENSMUST00000227123 Fgf17 protein_coding Interval_139177 chr6 96909423 96909840 + 0 NA intron (ENSMUSG00000046500.8, intron 3 of 5) protein_coding-intron (ENSMUSG00000046500.8, intron 3 of 5) 150762 ENSMUSG00000046500.8 ENSMUSG00000046500 ENSMUST00000203930 Tafa4 protein_coding Interval_128474 chr5 113516656 113517687 + 0 NA intron (ENSMUSG00000063430.9, intron 1 of 1) protein_coding-intron (ENSMUSG00000063430.9, intron 1 of 8) -61617 ENSMUSG00000063430.9 ENSMUSG00000063430 ENSMUST00000198673 Wscd2 protein_coding Interval_96290 chr2 121327507 121327761 + 0 NA TTS (ENSMUSG00000033526.16) protein_coding-TTS (ENSMUSG00000033526.16) 9525 ENSMUSG00000033526.16 ENSMUSG00000033526 ENSMUST00000134796 Ppip5k1 protein_coding Interval_65603 chr16 23969818 23970165 + 0 NA exon (ENSMUSG00000022508.5, exon 7 of 10) protein_coding-exon (ENSMUSG00000022508.5, exon 7 of 10) 2389 ENSMUSG00000022508.5 ENSMUSG00000022508 ENSMUST00000135352 Bcl6 protein_coding Interval_65864 chr16 29881840 29884118 + 0 NA Intergenic Intergenic -48251 ENSMUSG00000116891.1 ENSMUSG00000116891 ENSMUST00000232318 Gm32679 lincRNA Interval_102361 chr3 22171128 22173177 + 0 NA intron (ENSMUSG00000027630.13, intron 2 of 2) protein_coding-intron (ENSMUSG00000027630.13, intron 2 of 15) -79222 ENSMUSG00000087775.1 ENSMUSG00000087775 ENSMUST00000157150 Rprl2 ribozyme Interval_64014 chr16 5270950 5271299 + 0 NA intron (ENSMUSG00000087168.1, intron 1 of 1) antisense-intron (ENSMUSG00000087168.1, intron 1 of 1) -15192 ENSMUSG00000022544.14 ENSMUSG00000022544 ENSMUST00000140718 Eef2kmt protein_coding Interval_119646 chr4 138972205 138974019 + 0 NA exon (ENSMUSG00000041143.16, exon 1 of 17) protein_coding-exon (ENSMUSG00000041143.16, exon 1 of 17) 203 ENSMUSG00000041143.16 ENSMUSG00000041143 ENSMUST00000124835 Tmco4 protein_coding Interval_97609 chr2 140466634 140466897 + 0 NA intron (ENSMUSG00000068205.14, intron 3 of 3) protein_coding-intron (ENSMUSG00000068205.14, intron 3 of 17) -26118 ENSMUSG00000065769.1 ENSMUSG00000065769 ENSMUST00000083835 Gm23846 snRNA Interval_125713 chr5 73490287 73492834 + 0 NA promoter-TSS (ENSMUSG00000051674.15) protein_coding-promoter-TSS (ENSMUSG00000051674.15) -1096 ENSMUSG00000051674.15 ENSMUSG00000051674 ENSMUST00000136268 Dcun1d4 protein_coding Interval_119621 chr4 138805787 138806703 + 0 NA TTS (ENSMUSG00000041193.15) protein_coding-TTS (ENSMUSG00000041193.15) 3578 ENSMUSG00000041193.15 ENSMUSG00000041193 ENSMUST00000140100 Pla2g5 protein_coding Interval_50674 chr14 18022584 18022856 + 0 NA promoter-TSS (ENSMUSG00000114504.1) antisense-promoter-TSS (ENSMUSG00000114504.1) -819 ENSMUSG00000114504.1 ENSMUSG00000114504 ENSMUST00000224512 Gm48321 antisense Interval_18575 chr10 88067460 88067697 + 0 NA Intergenic Intergenic -20620 ENSMUSG00000112932.1 ENSMUSG00000112932 ENSMUST00000220444 Gm48308 TEC Interval_153325 chr7 143622789 143623522 + 0 NA intron (ENSMUSG00000045362.8, intron 1 of 7) protein_coding-intron (ENSMUSG00000045362.8, intron 1 of 7) -4869 ENSMUSG00000109251.1 ENSMUSG00000109251 ENSMUST00000207189 E230032D23Rik antisense Interval_130775 chr5 130307937 130309196 + 0 NA intron (ENSMUSG00000056310.14, intron 13 of 15) protein_coding-intron (ENSMUSG00000056310.14, intron 13 of 15) 52947 ENSMUSG00000056310.14 ENSMUSG00000056310 ENSMUST00000147619 Tyw1 protein_coding Interval_95823 chr2 116942046 116943160 + 0 NA Intergenic Intergenic -20634 ENSMUSG00000087910.1 ENSMUSG00000087910 ENSMUST00000157285 Gm24914 misc_RNA Interval_88329 chr2 3820441 3821314 + 0 NA Intergenic Intergenic -34153 ENSMUSG00000085656.1 ENSMUSG00000085656 ENSMUST00000141222 Gm13180 lincRNA Interval_101638 chr3 8371497 8371690 + 0 NA Intergenic Intergenic 44062 ENSMUSG00000103921.1 ENSMUSG00000103921 ENSMUST00000195307 Gm5841 processed_pseudogene Interval_113282 chr4 53107684 53107932 + 0 NA intron (ENSMUSG00000015243.4, intron 6 of 49) protein_coding-intron (ENSMUSG00000015243.4, intron 6 of 49) -66882 ENSMUSG00000015243.4 ENSMUSG00000015243 ENSMUST00000149127 Abca1 protein_coding Interval_43512 chr13 32312823 32313113 + 0 NA intron (ENSMUSG00000038372.14, intron 1 of 3) protein_coding-intron (ENSMUSG00000038372.14, intron 1 of 10) 25656 ENSMUSG00000038372.14 ENSMUSG00000038372 ENSMUST00000179717 Gmds protein_coding Interval_7642 chr1 132755184 132755539 + 0 NA Intergenic Intergenic 26006 ENSMUSG00000101126.1 ENSMUSG00000101126 ENSMUST00000189499 Gm10538 antisense Interval_53880 chr14 63092220 63092883 + 0 NA Intergenic Intergenic -2787 ENSMUSG00000114344.1 ENSMUSG00000114344 ENSMUST00000225584 Gm17941 processed_pseudogene Interval_130955 chr5 134253358 134253850 + 0 NA intron (ENSMUSG00000060261.15, intron 18 of 33) protein_coding-intron (ENSMUSG00000060261.15, intron 19 of 34) 17132 ENSMUSG00000107000.1 ENSMUSG00000107000 ENSMUST00000201715 Gm43481 TEC Interval_9745 chr1 161726776 161727067 + 0 NA exon (ENSMUSG00000040323.13, exon 2 of 3) processed_pseudogene-exon (ENSMUSG00000040323.13, exon 2 of 3) 568 ENSMUSG00000040323.13 ENSMUSG00000040323 ENSMUST00000151268 Gm15429 processed_pseudogene Interval_86292 chr19 38431183 38432403 + 0 NA Intergenic Intergenic 35752 ENSMUSG00000044026.3 ENSMUSG00000044026 ENSMUST00000236865 Slc35g1 protein_coding Interval_135810 chr6 47488874 47489058 + 0 NA intron (ENSMUSG00000029686.15, intron 2 of 3) protein_coding-intron (ENSMUSG00000029686.15, intron 2 of 21) -30730 ENSMUSG00000029686.15 ENSMUSG00000029686 ENSMUST00000149531 Cul1 protein_coding Interval_137932 chr6 83478217 83478542 + 0 NA Intergenic Intergenic 12041 ENSMUSG00000014554.13 ENSMUSG00000014554 ENSMUST00000147060 Dguok protein_coding Interval_156782 chr8 59219450 59219736 + 0 NA exon (ENSMUSG00000110401.1, exon 1 of 1) processed_pseudogene-exon (ENSMUSG00000110401.1, exon 1 of 1) 276 ENSMUSG00000110401.1 ENSMUSG00000110401 ENSMUST00000211003 Gm5740 processed_pseudogene Interval_167643 chr9 71475452 71476940 + 0 NA Intergenic Intergenic 9709 ENSMUSG00000032199.13 ENSMUSG00000032199 ENSMUST00000233263 Polr2m protein_coding Interval_172692 chrX 42540051 42540943 + 0 NA intron (ENSMUSG00000016150.15, intron 28 of 31) protein_coding-intron (ENSMUSG00000016150.15, intron 29 of 32) 38000 ENSMUSG00000005696.11 ENSMUSG00000005696 ENSMUST00000101619 Sh2d1a protein_coding Interval_48165 chr13 96906248 96907426 + 0 NA intron (ENSMUSG00000109561.1, intron 24 of 24) protein_coding-intron (ENSMUSG00000109561.1, intron 19 of 19) 9561 ENSMUSG00000099053.1 ENSMUSG00000099053 ENSMUST00000184031 Gm27792 rRNA Interval_2745 chr1 44101694 44103026 + 0 NA promoter-TSS (ENSMUSG00000026049.11) protein_coding-promoter-TSS (ENSMUSG00000026049.11) 78 ENSMUSG00000026049.11 ENSMUSG00000026049 ENSMUST00000125540 Tex30 protein_coding Interval_61009 chr15 78743797 78744703 + 0 NA Intergenic Intergenic 22914 ENSMUSG00000018169.12 ENSMUSG00000018169 ENSMUST00000128389 Mfng protein_coding Interval_9826 chr1 162723762 162724278 + 0 NA intron (ENSMUSG00000040225.15, intron 2 of 34) protein_coding-intron (ENSMUSG00000040225.15, intron 2 of 34) 6701 ENSMUSG00000040225.15 ENSMUSG00000040225 ENSMUST00000183286 Prrc2c protein_coding Interval_95069 chr2 103691255 103691850 + 0 NA intron (ENSMUSG00000032724.5, intron 3 of 16) protein_coding-intron (ENSMUSG00000032724.5, intron 3 of 16) -23483 ENSMUSG00000032724.5 ENSMUSG00000032724 ENSMUST00000131122 Abtb2 protein_coding Interval_95418 chr2 108928523 108928741 + 0 NA Intergenic Intergenic -20174 ENSMUSG00000063684.9 ENSMUSG00000063684 ENSMUST00000121752 Hadhb-ps processed_pseudogene Interval_173685 chrX 101935187 101936316 + 0 NA intron (ENSMUSG00000079481.11, intron 1 of 7) protein_coding-intron (ENSMUSG00000079481.11, intron 1 of 7) -23027 ENSMUSG00000087712.1 ENSMUSG00000087712 ENSMUST00000157087 Gm25828 snRNA Interval_63311 chr15 100258327 100259344 + 0 NA intron (ENSMUSG00000023027.13, intron 2 of 2) protein_coding-intron (ENSMUSG00000023027.13, intron 6 of 6) -22006 ENSMUSG00000045631.10 ENSMUSG00000045631 ENSMUST00000230901 Tmprss12 protein_coding Interval_17603 chr10 78114087 78115251 + 0 NA Intergenic Intergenic 23428 ENSMUSG00000112662.1 ENSMUSG00000112662 ENSMUST00000218616 Gm47922 lincRNA Interval_14350 chr10 31327306 31328840 + 0 NA exon (ENSMUSG00000000295.13, exon 6 of 6) protein_coding-exon (ENSMUSG00000000295.13, exon 6 of 6) 6655 ENSMUSG00000111664.1 ENSMUSG00000111664 ENSMUST00000214047 Gm48865 TEC Interval_132848 chr5 148292588 148293945 + 0 NA intron (ENSMUSG00000029651.16, intron 2 of 7) protein_coding-intron (ENSMUSG00000029651.16, intron 3 of 6) 57274 ENSMUSG00000029651.16 ENSMUSG00000029651 ENSMUST00000085554 Mtus2 protein_coding Interval_113863 chr4 59420797 59422218 + 0 NA intron (ENSMUSG00000038578.15, intron 3 of 16) protein_coding-intron (ENSMUSG00000038578.15, intron 3 of 16) -52641 ENSMUSG00000083979.1 ENSMUSG00000083979 ENSMUST00000117967 Gm12527 processed_pseudogene Interval_119466 chr4 137761090 137761482 + 0 NA intron (ENSMUSG00000028766.10, intron 1 of 11) protein_coding-intron (ENSMUSG00000028766.10, intron 1 of 11) 20905 ENSMUSG00000028766.10 ENSMUSG00000028766 ENSMUST00000143757 Alpl protein_coding Interval_47873 chr13 94057084 94058431 + 0 NA promoter-TSS (ENSMUSG00000045312.12) protein_coding-promoter-TSS (ENSMUSG00000045312.12) 3914 ENSMUSG00000114174.1 ENSMUSG00000114174 ENSMUST00000223240 Cycs-ps3 processed_pseudogene Interval_3889 chr1 64458023 64458243 + 0 NA Intergenic Intergenic -3556 ENSMUSG00000099658.1 ENSMUSG00000099658 ENSMUST00000187877 Gm28980 processed_pseudogene Interval_111277 chr4 16927285 16927861 + 0 NA Intergenic Intergenic -65779 ENSMUSG00000064619.1 ENSMUSG00000064619 ENSMUST00000082685 Gm23975 snRNA Interval_121939 chr5 10462316 10462530 + 0 NA Intergenic Intergenic -74862 ENSMUSG00000091817.1 ENSMUSG00000091817 ENSMUST00000163248 Gm17091 unprocessed_pseudogene Interval_146659 chr7 49243632 49243890 + 0 NA intron (ENSMUSG00000052512.17, intron 2 of 39) protein_coding-intron (ENSMUSG00000052512.17, intron 2 of 39) 48220 ENSMUSG00000103834.1 ENSMUSG00000103834 ENSMUST00000195677 Gm37613 TEC Interval_68915 chr16 88559268 88559462 + 0 NA Intergenic Intergenic 3818 ENSMUSG00000050520.4 ENSMUSG00000050520 ENSMUST00000049697 Cldn8 protein_coding Interval_161664 chr8 121880550 121882537 + 0 NA exon (ENSMUSG00000040010.10, exon 10 of 10) protein_coding-exon (ENSMUSG00000040010.10, exon 10 of 10) 14959 ENSMUSG00000040010.10 ENSMUSG00000040010 ENSMUST00000183015 Slc7a5 protein_coding Interval_36978 chr12 55853783 55854075 + 0 NA intron (ENSMUSG00000012076.8, intron 2 of 4) protein_coding-intron (ENSMUSG00000012076.8, intron 4 of 9) 17525 ENSMUSG00000012076.8 ENSMUSG00000012076 ENSMUST00000219575 Brms1l protein_coding Interval_47818 chr13 93484216 93484508 + 0 NA intron (ENSMUSG00000021690.10, intron 1 of 3) protein_coding-intron (ENSMUSG00000021690.10, intron 1 of 10) 15375 ENSMUSG00000021690.10 ENSMUSG00000021690 ENSMUST00000220513 Jmy protein_coding Interval_103287 chr3 38164598 38164844 + 0 NA Intergenic Intergenic -34530 ENSMUSG00000105219.1 ENSMUSG00000105219 ENSMUST00000199198 Gm43821 lincRNA Interval_162135 chr8 125421228 125421446 + 0 NA intron (ENSMUSG00000001995.9, intron 22 of 22) protein_coding-intron (ENSMUSG00000001995.9, intron 20 of 20) 148471 ENSMUSG00000001995.9 ENSMUSG00000001995 ENSMUST00000212604 Sipa1l2 protein_coding Interval_171040 chr9 113906469 113906681 + 0 NA intron (ENSMUSG00000033392.16, intron 30 of 34) protein_coding-intron (ENSMUSG00000033392.16, intron 28 of 32) -25054 ENSMUSG00000009741.15 ENSMUSG00000009741 ENSMUST00000216293 Ubp1 protein_coding Interval_49274 chr13 110040224 110040633 + 0 NA Intergenic Intergenic 136619 ENSMUSG00000084651.1 ENSMUSG00000084651 ENSMUST00000122702 Mir1904 miRNA Interval_46509 chr13 66729587 66730798 + 0 NA Intergenic Intergenic 11121 ENSMUSG00000114839.1 ENSMUSG00000114839 ENSMUST00000225542 Gm40989 processed_pseudogene Interval_32232 chr11 106340204 106340483 + 0 NA intron (ENSMUSG00000001027.7, intron 10 of 23) protein_coding-intron (ENSMUSG00000001027.7, intron 10 of 23) 12945 ENSMUSG00000001027.7 ENSMUSG00000001027 ENSMUST00000174877 Scn4a protein_coding Interval_167815 chr9 72853725 72854095 + 0 NA intron (ENSMUSG00000036030.9, intron 8 of 19) protein_coding-intron (ENSMUSG00000036030.9, intron 8 of 19) -15742 ENSMUSG00000102971.1 ENSMUSG00000102971 ENSMUST00000192843 A730062M13Rik TEC Interval_67894 chr16 58790908 58792615 + 0 NA Intergenic Intergenic 8507 ENSMUSG00000049362.6 ENSMUSG00000049362 ENSMUST00000049940 Olfr173 protein_coding Interval_88644 chr2 8498374 8499066 + 0 NA Intergenic Intergenic -26336 ENSMUSG00000088574.1 ENSMUSG00000088574 ENSMUST00000157949 Gm24534 misc_RNA Interval_63444 chr15 101128350 101129156 + 0 NA promoter-TSS (ENSMUSG00000000530.16) protein_coding-promoter-TSS (ENSMUSG00000000530.16) 216 ENSMUSG00000000530.16 ENSMUSG00000000530 ENSMUST00000128525 Acvrl1 protein_coding Interval_31664 chr11 102117358 102117920 + 0 NA Intergenic Intergenic -4066 ENSMUSG00000084200.1 ENSMUSG00000084200 ENSMUST00000120636 Gm11584 processed_pseudogene Interval_85251 chr19 24172218 24172820 + 0 NA intron (ENSMUSG00000024812.11, intron 1 of 22) protein_coding-intron (ENSMUSG00000024812.11, intron 1 of 22) 18449 ENSMUSG00000118371.1 ENSMUSG00000118371 ENSMUST00000237530 Gm50308 processed_pseudogene Interval_122412 chr5 22330836 22331046 + 0 NA intron (ENSMUSG00000042453.14, intron 1 of 7) protein_coding-intron (ENSMUSG00000042453.14, intron 1 of 63) -3501 ENSMUSG00000090226.1 ENSMUSG00000090226 ENSMUST00000161473 Gm16110 antisense Interval_144531 chr7 25737046 25737333 + 0 NA intron (ENSMUSG00000040725.13, intron 7 of 7) protein_coding-intron (ENSMUSG00000040725.13, intron 7 of 14) 17568 ENSMUSG00000040725.13 ENSMUSG00000040725 ENSMUST00000206041 Hnrnpul1 protein_coding Interval_128238 chr5 111937211 111937481 + 0 NA Intergenic Intergenic 6889 ENSMUSG00000106060.1 ENSMUSG00000106060 ENSMUST00000197648 Gm42488 lincRNA Interval_171443 chr9 118391447 118392439 + 0 NA Intergenic Intergenic 11359 ENSMUSG00000103968.1 ENSMUSG00000103968 ENSMUST00000193035 2610509F24Rik TEC Interval_95886 chr2 118039647 118040030 + 0 NA promoter-TSS (ENSMUSG00000103266.1) TEC-promoter-TSS (ENSMUSG00000103266.1) -5 ENSMUSG00000103266.1 ENSMUSG00000103266 ENSMUST00000193616 Gm36979 TEC Interval_56495 chr14 119197676 119197956 + 0 NA intron (ENSMUSG00000053465.6, intron 1 of 1) protein_coding-intron (ENSMUSG00000053465.6, intron 1 of 1) 59475 ENSMUSG00000053465.6 ENSMUSG00000053465 ENSMUST00000065904 Hs6st3 protein_coding Interval_78767 chr18 20528233 20528533 + 0 NA intron (ENSMUSG00000056632.8, intron 9 of 18) protein_coding-intron (ENSMUSG00000056632.8, intron 9 of 15) 18100 ENSMUSG00000056632.8 ENSMUSG00000056632 ENSMUST00000234945 Dsg3 protein_coding Interval_41079 chr12 111047397 111047600 + 0 NA intron (ENSMUSG00000037896.17, intron 2 of 11) protein_coding-intron (ENSMUSG00000037896.17, intron 2 of 11) 7700 ENSMUSG00000037896.17 ENSMUSG00000037896 ENSMUST00000116388 Rcor1 protein_coding Interval_118060 chr4 128688597 128689438 + 0 NA intron (ENSMUSG00000028796.17, intron 1 of 1) protein_coding-intron (ENSMUSG00000028796.17, intron 1 of 14) -21147 ENSMUSG00000028796.17 ENSMUSG00000028796 ENSMUST00000134421 Phc2 protein_coding Interval_99413 chr2 160765155 160766021 + 0 NA TTS (ENSMUSG00000035877.17) protein_coding-TTS (ENSMUSG00000035877.17) -13679 ENSMUSG00000098889.1 ENSMUSG00000098889 ENSMUST00000154038 Gm27206 antisense Interval_170703 chr9 110192474 110193132 + 0 NA intron (ENSMUSG00000032481.17, intron 19 of 24) protein_coding-intron (ENSMUSG00000032481.17, intron 19 of 27) -43591 ENSMUSG00000032481.17 ENSMUSG00000032481 ENSMUST00000200426 Smarcc1 protein_coding Interval_127236 chr5 101763574 101765775 + 0 NA promoter-TSS (ENSMUSG00000029330.8) protein_coding-promoter-TSS (ENSMUSG00000029330.8) -18404 ENSMUSG00000104966.1 ENSMUSG00000104966 ENSMUST00000199649 Gm43273 TEC Interval_50962 chr14 21157879 21158621 + 0 NA intron (ENSMUSG00000039197.10, intron 3 of 6) protein_coding-intron (ENSMUSG00000039197.10, intron 3 of 10) -105374 ENSMUSG00000088456.1 ENSMUSG00000088456 ENSMUST00000157831 Gm26372 misc_RNA Interval_96985 chr2 130273592 130276187 + 0 NA promoter-TSS (ENSMUSG00000080610.1) snoRNA-promoter-TSS (ENSMUSG00000080610.1) -617 ENSMUSG00000080610.1 ENSMUSG00000080610 ENSMUST00000116960 Snord110 snoRNA Interval_4442 chr1 74229959 74230166 + 0 NA Intergenic Intergenic -6022 ENSMUSG00000006304.14 ENSMUSG00000006304 ENSMUST00000113819 Arpc2 protein_coding Interval_148383 chr7 80910744 80911762 + 0 NA exon (ENSMUSG00000109390.1, exon 1 of 1) TEC-exon (ENSMUSG00000109390.1, exon 1 of 1) 2913 ENSMUSG00000109390.1 ENSMUSG00000109390 ENSMUST00000207577 Gm45718 TEC Interval_120294 chr4 145250017 145250237 + 0 NA Intergenic Intergenic -3257 ENSMUSG00000028599.10 ENSMUSG00000028599 ENSMUST00000143055 Tnfrsf1b protein_coding Interval_84151 chr19 7563277 7563745 + 0 NA intron (ENSMUSG00000060675.13, intron 1 of 2) protein_coding-intron (ENSMUSG00000060675.13, intron 2 of 4) 6034 ENSMUSG00000060675.13 ENSMUSG00000060675 ENSMUST00000136756 Plaat3 protein_coding Interval_63901 chr16 4469408 4470213 + 0 NA Intergenic Intergenic -49312 ENSMUSG00000005580.11 ENSMUSG00000005580 ENSMUST00000005719 Adcy9 protein_coding Interval_67331 chr16 46482141 46482329 + 0 NA intron (ENSMUSG00000022656.15, intron 1 of 2) protein_coding-intron (ENSMUSG00000022656.15, intron 1 of 5) 14537 ENSMUSG00000022656.15 ENSMUSG00000022656 ENSMUST00000133935 Nectin3 protein_coding Interval_105403 chr3 86004541 86005324 + 0 NA intron (ENSMUSG00000028082.14, intron 1 of 20) protein_coding-intron (ENSMUSG00000028082.14, intron 1 of 20) -2441 ENSMUSG00000049013.3 ENSMUSG00000049013 ENSMUST00000061343 Prss48 protein_coding Interval_24578 chr11 34771328 34771574 + 0 NA intron (ENSMUSG00000020143.15, intron 1 of 26) protein_coding-intron (ENSMUSG00000020143.15, intron 1 of 51) 52500 ENSMUSG00000069910.2 ENSMUSG00000069910 ENSMUST00000148387 Spdl1 protein_coding Interval_30540 chr11 95012766 95012967 + 0 NA intron (ENSMUSG00000047181.12, intron 1 of 3) protein_coding-intron (ENSMUSG00000047181.12, intron 1 of 9) 2984 ENSMUSG00000047181.12 ENSMUSG00000047181 ENSMUST00000124735 Samd14 protein_coding Interval_12452 chr1 193575724 193576497 + 0 NA Intergenic Intergenic -65936 ENSMUSG00000097850.2 ENSMUSG00000097850 ENSMUST00000180420 Mir205hg lincRNA Interval_155626 chr8 35276995 35278672 + 0 NA Intergenic Intergenic -32354 ENSMUSG00000109688.1 ENSMUSG00000109688 ENSMUST00000211189 Gm34597 lincRNA Interval_59565 chr15 55317894 55318521 + 0 NA intron (ENSMUSG00000022371.16, intron 1 of 47) protein_coding-intron (ENSMUSG00000022371.16, intron 1 of 47) -55604 ENSMUSG00000095792.1 ENSMUSG00000095792 ENSMUST00000179457 Gm26296 snRNA Interval_47315 chr13 81194737 81195454 + 0 NA intron (ENSMUSG00000069170.14, intron 3 of 7) protein_coding-intron (ENSMUSG00000069170.14, intron 85 of 89) 45689 ENSMUSG00000114939.1 ENSMUSG00000114939 ENSMUST00000225657 Gm48566 TEC Interval_100497 chr2 169642703 169643042 + 0 NA intron (ENSMUSG00000047907.11, intron 1 of 2) protein_coding-intron (ENSMUSG00000047907.11, intron 1 of 1) -14554 ENSMUSG00000103662.1 ENSMUSG00000103662 ENSMUST00000191912 Gm34294 TEC Interval_77112 chr17 86662169 86663203 + 0 NA Intergenic Intergenic 22810 ENSMUSG00000117568.1 ENSMUSG00000117568 ENSMUST00000234033 Gm18832 processed_pseudogene Interval_65590 chr16 23876945 23877209 + 0 NA Intergenic Intergenic 13881 ENSMUSG00000004366.4 ENSMUSG00000004366 ENSMUST00000004480 Sst protein_coding Interval_51200 chr14 24803304 24804186 + 0 NA Intergenic Intergenic -29890 ENSMUSG00000114965.1 ENSMUSG00000114965 ENSMUST00000223735 Gm47906 lincRNA Interval_111860 chr4 32055006 32055586 + 0 NA Intergenic Intergenic 3558 ENSMUSG00000082398.1 ENSMUSG00000082398 ENSMUST00000118472 Gm11927 processed_pseudogene Interval_98603 chr2 153527773 153530623 + 0 NA intron (ENSMUSG00000061411.12, intron 1 of 10) protein_coding-intron (ENSMUSG00000061411.12, intron 1 of 10) 36408 ENSMUSG00000079001.1 ENSMUSG00000079001 ENSMUST00000109783 4930404H24Rik protein_coding Interval_28267 chr11 74785763 74786684 + 0 NA intron (ENSMUSG00000010554.14, intron 3 of 9) protein_coding-intron (ENSMUSG00000010554.14, intron 3 of 10) -17101 ENSMUSG00000010554.14 ENSMUSG00000010554 ENSMUST00000134571 Mettl16 protein_coding Interval_90286 chr2 29551869 29554342 + 0 NA Intergenic Intergenic 54893 ENSMUSG00000082413.1 ENSMUSG00000082413 ENSMUST00000117074 Gm13401 processed_pseudogene Interval_49208 chr13 109478576 109478802 + 0 NA intron (ENSMUSG00000021699.17, intron 1 of 14) protein_coding-intron (ENSMUSG00000021699.17, intron 1 of 14) 153945 ENSMUSG00000076946.2 ENSMUSG00000076946 ENSMUST00000103758 Mir582 miRNA Interval_169700 chr9 100486703 100486907 + 0 NA promoter-TSS (ENSMUSG00000044244.18) protein_coding-promoter-TSS (ENSMUSG00000044244.18) -16196 ENSMUSG00000044244.18 ENSMUSG00000044244 ENSMUST00000122880 Il20rb protein_coding Interval_12042 chr1 189030930 189031136 + 0 NA Intergenic Intergenic -23192 ENSMUSG00000026608.13 ENSMUSG00000026608 ENSMUST00000193273 Kctd3 protein_coding Interval_167241 chr9 66606354 66606595 + 0 NA Intergenic Intergenic -13468 ENSMUSG00000032376.12 ENSMUSG00000032376 ENSMUST00000139952 Usp3 protein_coding Interval_114564 chr4 82504338 82507135 + 0 NA promoter-TSS (ENSMUSG00000008575.17) protein_coding-promoter-TSS (ENSMUSG00000008575.17) -2280 ENSMUSG00000087413.1 ENSMUSG00000087413 ENSMUST00000139835 Gm11266 antisense Interval_147916 chr7 75532574 75532899 + 0 NA intron (ENSMUSG00000066406.16, intron 1 of 3) protein_coding-intron (ENSMUSG00000066406.16, intron 1 of 36) -27878 ENSMUSG00000108557.1 ENSMUSG00000108557 ENSMUST00000205544 Gm44835 TEC Interval_129743 chr5 122079577 122081049 + 0 NA Intergenic Intergenic -20719 ENSMUSG00000013936.12 ENSMUSG00000013936 ENSMUST00000126006 Myl2 protein_coding Interval_92036 chr2 52778286 52778558 + 0 NA Intergenic Intergenic -36232 ENSMUSG00000055371.17 ENSMUSG00000055371 ENSMUST00000138290 Stam2 protein_coding Interval_505 chr1 6575722 6575945 + 0 NA intron (ENSMUSG00000033740.17, intron 2 of 22) protein_coding-intron (ENSMUSG00000033740.17, intron 2 of 22) -134537 ENSMUSG00000103845.1 ENSMUSG00000103845 ENSMUST00000194240 Gm19026 processed_pseudogene Interval_160786 chr8 112238565 112239109 + 0 NA Intergenic Intergenic -1871 ENSMUSG00000110435.1 ENSMUSG00000110435 ENSMUST00000212314 Gm3635 processed_pseudogene Interval_14244 chr10 29500581 29500817 + 0 NA intron (ENSMUSG00000019880.10, intron 1 of 3) protein_coding-intron (ENSMUSG00000019880.10, intron 3 of 4) 4031 ENSMUSG00000019880.10 ENSMUSG00000019880 ENSMUST00000092623 Rspo3 protein_coding Interval_111145 chr4 13128299 13128753 + 0 NA Intergenic Intergenic 52386 ENSMUSG00000086227.1 ENSMUSG00000086227 ENSMUST00000139614 Gm11820 lincRNA Interval_12633 chr10 4040848 4042105 + 0 NA intron (ENSMUSG00000040675.17, intron 3 of 6) protein_coding-intron (ENSMUSG00000040675.17, intron 16 of 27) 9196 ENSMUSG00000040675.17 ENSMUSG00000040675 ENSMUST00000154517 Mthfd1l protein_coding Interval_151495 chr7 123070821 123071073 + 0 NA intron (ENSMUSG00000110230.1, intron 2 of 2) lincRNA-intron (ENSMUSG00000110230.1, intron 2 of 2) 39532 ENSMUSG00000109814.1 ENSMUSG00000109814 ENSMUST00000209402 Gm45847 lincRNA Interval_49718 chr13 114231963 114233310 + 0 NA intron (ENSMUSG00000104314.1, intron 1 of 1) TEC-intron (ENSMUSG00000104314.1, intron 1 of 1) 5525 ENSMUSG00000104314.1 ENSMUSG00000104314 ENSMUST00000195644 Gm37907 TEC Interval_31801 chr11 102963014 102965269 + 0 NA exon (ENSMUSG00000085338.1, exon 1 of 3) lincRNA-exon (ENSMUSG00000085338.1, exon 1 of 3) 246 ENSMUSG00000085338.1 ENSMUSG00000085338 ENSMUST00000138424 2410004I01Rik lincRNA Interval_146408 chr7 45738884 45740011 + 0 NA intron (ENSMUSG00000003271.17, intron 1 of 5) protein_coding-intron (ENSMUSG00000003271.17, intron 2 of 6) -2602 ENSMUSG00000109602.1 ENSMUSG00000109602 ENSMUST00000211176 Gm31597 antisense Interval_54099 chr14 65277631 65278051 + 0 NA intron (ENSMUSG00000034532.9, intron 2 of 8) protein_coding-intron (ENSMUSG00000034532.9, intron 2 of 6) 11104 ENSMUSG00000034532.9 ENSMUSG00000034532 ENSMUST00000226005 Fbxo16 protein_coding Interval_110068 chr3 152948576 152949270 + 0 NA intron (ENSMUSG00000039047.17, intron 14 of 14) protein_coding-intron (ENSMUSG00000039037.5, intron 2 of 4) 5610 ENSMUSG00000090163.1 ENSMUSG00000090163 ENSMUST00000160432 Gm16231 antisense Interval_133945 chr6 16253248 16254009 + 0 NA Intergenic Intergenic 16001 ENSMUSG00000108089.1 ENSMUSG00000108089 ENSMUST00000203594 Gm3148 processed_pseudogene Interval_38019 chr12 73996840 73998431 + 0 NA promoter-TSS (ENSMUSG00000044912.11) protein_coding-promoter-TSS (ENSMUSG00000044912.11) 33154 ENSMUSG00000021113.5 ENSMUSG00000021113 ENSMUST00000220909 Snapc1 protein_coding Interval_18936 chr10 93261487 93262635 + 0 NA exon (ENSMUSG00000020015.10, exon 3 of 4) protein_coding-exon (ENSMUSG00000020015.10, exon 3 of 4) 23038 ENSMUSG00000020015.10 ENSMUSG00000020015 ENSMUST00000216729 Cdk17 protein_coding Interval_142658 chr6 144815001 144815736 + 0 NA Intergenic Intergenic -11736 ENSMUSG00000087850.1 ENSMUSG00000087850 ENSMUST00000157225 Gm22792 snoRNA Interval_66546 chr16 35016588 35017098 + 0 NA intron (ENSMUSG00000116840.1, intron 2 of 4) antisense-intron (ENSMUSG00000116840.1, intron 2 of 3) 6057 ENSMUSG00000116840.1 ENSMUSG00000116840 ENSMUST00000232358 Gm21691 antisense Interval_143193 chr7 4355488 4355711 + 0 NA Intergenic Intergenic -4000 ENSMUSG00000108667.1 ENSMUSG00000108667 ENSMUST00000206883 Gm45013 processed_pseudogene Interval_8934 chr1 152436410 152436645 + 0 NA intron (ENSMUSG00000032649.14, intron 1 of 13) protein_coding-intron (ENSMUSG00000032649.14, intron 1 of 11) -29002 ENSMUSG00000080878.1 ENSMUSG00000080878 ENSMUST00000121610 Gm15618 processed_pseudogene Interval_93653 chr2 75624256 75624548 + 0 NA Intergenic Intergenic 8980 ENSMUSG00000082152.1 ENSMUSG00000082152 ENSMUST00000119695 Gm13655 processed_pseudogene Interval_111636 chr4 24943905 24944348 + 0 NA Intergenic Intergenic -22281 ENSMUSG00000040372.2 ENSMUSG00000040372 ENSMUST00000038920 Gpr63 protein_coding Interval_68368 chr16 74691499 74691697 + 0 NA Intergenic Intergenic 83841 ENSMUSG00000088392.1 ENSMUSG00000088392 ENSMUST00000157767 Gm26307 snoRNA Interval_54568 chr14 70720764 70721103 + 0 NA intron (ENSMUSG00000022100.14, intron 1 of 21) protein_coding-intron (ENSMUSG00000022100.14, intron 1 of 27) -12898 ENSMUSG00000022100.14 ENSMUSG00000022100 ENSMUST00000227550 Xpo7 protein_coding Interval_135077 chr6 35199863 35200655 + 0 NA intron (ENSMUSG00000038759.15, intron 12 of 14) protein_coding-intron (ENSMUSG00000038759.15, intron 12 of 42) 22643 ENSMUSG00000038759.15 ENSMUSG00000038759 ENSMUST00000200739 Nup205 protein_coding Interval_108126 chr3 121733992 121734308 + 0 NA exon (ENSMUSG00000028128.13, exon 6 of 6) protein_coding-exon (ENSMUSG00000028128.13, exon 6 of 6) 4603 ENSMUSG00000028128.13 ENSMUSG00000028128 ENSMUST00000199997 F3 protein_coding Interval_38643 chr12 80769718 80770039 + 0 NA Intergenic Intergenic -9191 ENSMUSG00000062961.7 ENSMUSG00000062961 ENSMUST00000073251 Ccdc177 protein_coding Interval_140921 chr6 122762471 122763304 + 0 NA intron (ENSMUSG00000003153.10, intron 2 of 4) protein_coding-intron (ENSMUSG00000003153.10, intron 2 of 4) 17070 ENSMUSG00000003153.10 ENSMUSG00000003153 ENSMUST00000168801 Slc2a3 protein_coding Interval_57116 chr15 6653679 6654630 + 0 NA promoter-TSS (ENSMUSG00000022148.16) protein_coding-promoter-TSS (ENSMUSG00000022148.16) 231 ENSMUSG00000067547.6 ENSMUSG00000067547 ENSMUST00000146631 Gm7666 transcribed_processed_pseudogene Interval_122578 chr5 23889587 23889772 + 0 NA Intergenic Intergenic -13236 ENSMUSG00000118576.1 ENSMUSG00000118576 ENSMUST00000239129 AC117663.1 unprocessed_pseudogene Interval_37103 chr12 58415893 58416087 + 0 NA Intergenic Intergenic -146700 ENSMUSG00000045930.3 ENSMUSG00000045930 ENSMUST00000062254 Clec14a protein_coding Interval_128778 chr5 115208318 115209127 + 0 NA Intergenic Intergenic 10379 ENSMUSG00000083182.1 ENSMUSG00000083182 ENSMUST00000122278 Gm13828 processed_pseudogene Interval_84441 chr19 10926196 10926717 + 0 NA Intergenic Intergenic -10158 ENSMUSG00000024734.8 ENSMUSG00000024734 ENSMUST00000025641 Zp1 protein_coding Interval_150773 chr7 114281416 114283421 + 0 NA Intergenic Intergenic -6351 ENSMUSG00000030751.18 ENSMUSG00000030751 ENSMUST00000210966 Psma1 protein_coding Interval_102629 chr3 28694708 28694936 + 0 NA Intergenic Intergenic -26695 ENSMUSG00000027690.13 ENSMUSG00000027690 ENSMUST00000169047 Slc2a2 protein_coding Interval_96319 chr2 121588062 121589082 + 0 NA intron (ENSMUSG00000027238.17, intron 2 of 14) protein_coding-intron (ENSMUSG00000027238.17, intron 2 of 13) -37221 ENSMUSG00000027238.17 ENSMUSG00000027238 ENSMUST00000153704 Frmd5 protein_coding Interval_28356 chr11 75350996 75351476 + 0 NA intron (ENSMUSG00000018809.2, intron 2 of 2) protein_coding-intron (ENSMUSG00000018809.2, intron 2 of 10) 2741 ENSMUSG00000018809.2 ENSMUSG00000018809 ENSMUST00000135774 Smyd4 protein_coding Interval_36089 chr12 35514938 35515229 + 0 NA exon (ENSMUSG00000019256.17, exon 3 of 11) protein_coding-exon (ENSMUSG00000019256.17, exon 3 of 11) 11696 ENSMUSG00000019256.17 ENSMUSG00000019256 ENSMUST00000173414 Ahr protein_coding Interval_22760 chr11 14929070 14929713 + 0 NA Intergenic Intergenic -119767 ENSMUSG00000084183.1 ENSMUSG00000084183 ENSMUST00000121361 Gm12009 processed_pseudogene Interval_20449 chr10 117682572 117683998 + 0 NA exon (ENSMUSG00000020183.11, exon 9 of 9) protein_coding-exon (ENSMUSG00000020183.11, exon 9 of 9) 7392 ENSMUSG00000020183.11 ENSMUSG00000020183 ENSMUST00000141991 Cpm protein_coding Interval_61264 chr15 80340316 80341300 + 0 NA intron (ENSMUSG00000022416.15, intron 5 of 36) protein_coding-intron (ENSMUSG00000022416.15, intron 5 of 36) -48520 ENSMUSG00000022416.15 ENSMUSG00000022416 ENSMUST00000160175 Cacna1i protein_coding Interval_33799 chr11 118603058 118603727 + 0 NA intron (ENSMUSG00000025576.17, intron 3 of 13) protein_coding-intron (ENSMUSG00000025576.17, intron 4 of 14) -96039 ENSMUSG00000025576.17 ENSMUSG00000025576 ENSMUST00000134774 Rbfox3 protein_coding Interval_99221 chr2 158189130 158189682 + 0 NA intron (ENSMUSG00000037813.13, intron 14 of 14) protein_coding-intron (ENSMUSG00000037813.13, intron 14 of 15) -2602 ENSMUSG00000078957.3 ENSMUSG00000078957 ENSMUST00000109506 1700060C20Rik antisense Interval_127026 chr5 99699334 99699604 + 0 NA intron (ENSMUSG00000089743.7, intron 1 of 1) protein_coding-intron (ENSMUSG00000089809.9, intron 1 of 1) 16470 ENSMUSG00000029331.3 ENSMUSG00000029331 ENSMUST00000031274 4930522N08Rik antisense Interval_114932 chr4 87184765 87185099 + 0 NA intron (ENSMUSG00000037996.17, intron 2 of 2) protein_coding-intron (ENSMUSG00000037996.17, intron 1 of 9) 45535 ENSMUSG00000037996.17 ENSMUSG00000037996 ENSMUST00000155361 Slc24a2 protein_coding Interval_32767 chr11 110411564 110412184 + 0 NA intron (ENSMUSG00000020623.11, intron 1 of 11) protein_coding-intron (ENSMUSG00000020623.11, intron 1 of 11) -65503 ENSMUSG00000020623.11 ENSMUSG00000020623 ENSMUST00000133920 Map2k6 protein_coding Interval_17230 chr10 75151091 75152406 + 0 NA intron (ENSMUSG00000009681.10, intron 8 of 22) protein_coding-intron (ENSMUSG00000009681.10, intron 8 of 22) -24628 ENSMUSG00000009681.10 ENSMUSG00000009681 ENSMUST00000219807 Bcr protein_coding Interval_63771 chr15 103337037 103337914 + 0 NA intron (ENSMUSG00000000552.10, intron 1 of 7) protein_coding-intron (ENSMUSG00000000552.10, intron 1 of 7) 13050 ENSMUSG00000098419.1 ENSMUSG00000098419 ENSMUST00000183535 Mir6963 miRNA Interval_34266 chr11 121829992 121831428 + 0 NA promoter-TSS (ENSMUSG00000085970.1) antisense-promoter-TSS (ENSMUSG00000085970.1) 463 ENSMUSG00000039198.8 ENSMUSG00000039198 ENSMUST00000036690 Ptchd3 protein_coding Interval_79703 chr18 34605494 34606998 + 0 NA intron (ENSMUSG00000003778.14, intron 13 of 19) protein_coding-intron (ENSMUSG00000003778.14, intron 15 of 21) -8901 ENSMUSG00000049357.11 ENSMUSG00000049357 ENSMUST00000129566 Brd8dc protein_coding Interval_125353 chr5 66378389 66379062 + 0 NA intron (ENSMUSG00000029207.16, intron 5 of 12) protein_coding-intron (ENSMUSG00000029207.16, intron 9 of 17) 21807 ENSMUSG00000106910.1 ENSMUSG00000106910 ENSMUST00000202238 Gm16273 processed_pseudogene Interval_65838 chr16 29714173 29715044 + 0 NA Intergenic Intergenic 39704 ENSMUSG00000116814.1 ENSMUSG00000116814 ENSMUST00000232037 Gm49636 lincRNA Interval_67556 chr16 50774552 50775562 + 0 NA Intergenic Intergenic -8421 ENSMUSG00000092276.2 ENSMUSG00000092276 ENSMUST00000174511 1700116B05Rik lincRNA Interval_109163 chr3 137321301 137321516 + 0 NA Intergenic Intergenic -19766 ENSMUSG00000054690.17 ENSMUSG00000054690 ENSMUST00000197511 Emcn protein_coding Interval_48768 chr13 102936366 102936570 + 0 NA intron (ENSMUSG00000034751.17, intron 3 of 27) protein_coding-intron (ENSMUSG00000034751.17, intron 2 of 27) 160377 ENSMUSG00000034751.17 ENSMUSG00000034751 ENSMUST00000187024 Mast4 protein_coding Interval_168076 chr9 75924180 75925685 + 0 NA intron (ENSMUSG00000097836.1, intron 2 of 4) antisense-intron (ENSMUSG00000097836.1, intron 2 of 4) 13510 ENSMUSG00000105435.1 ENSMUSG00000105435 ENSMUST00000200417 Gm44355 miRNA Interval_88626 chr2 7127217 7128068 + 0 NA intron (ENSMUSG00000002107.18, intron 2 of 11) protein_coding-intron (ENSMUSG00000002107.18, intron 2 of 15) -51228 ENSMUSG00000065824.1 ENSMUSG00000065824 ENSMUST00000083890 Gm26315 misc_RNA Interval_105382 chr3 85832575 85833445 + 0 NA intron (ENSMUSG00000102805.5, intron 1 of 3) protein_coding-intron (ENSMUSG00000102805.5, intron 1 of 3) 54506 ENSMUSG00000031286.6 ENSMUSG00000031286 ENSMUST00000033643 Glt28d2 protein_coding Interval_104204 chr3 60556913 60557173 + 0 NA intron (ENSMUSG00000027763.13, intron 2 of 3) protein_coding-intron (ENSMUSG00000027763.13, intron 2 of 9) 21292 ENSMUSG00000104235.1 ENSMUSG00000104235 ENSMUST00000193609 Gm37589 TEC Interval_84860 chr19 17836555 17837995 + 0 NA exon (ENSMUSG00000024713.16, exon 1 of 38) protein_coding-exon (ENSMUSG00000024713.16, exon 1 of 38) 357 ENSMUSG00000024713.16 ENSMUSG00000024713 ENSMUST00000235505 Pcsk5 protein_coding Interval_21473 chr10 128792030 128792524 + 0 NA TTS (ENSMUSG00000025355.7) protein_coding-TTS (ENSMUSG00000025355.7) 1367 ENSMUSG00000025355.7 ENSMUSG00000025355 ENSMUST00000218021 Mmp19 protein_coding Interval_141388 chr6 127893647 127894056 + 0 NA intron (ENSMUSG00000030351.5, intron 1 of 2) protein_coding-intron (ENSMUSG00000030351.5, intron 1 of 7) 6079 ENSMUSG00000030351.5 ENSMUSG00000030351 ENSMUST00000149801 Tspan11 protein_coding Interval_51067 chr14 21951279 21951578 + 0 NA intron (ENSMUSG00000104232.1, intron 2 of 3) TEC-intron (ENSMUSG00000104232.1, intron 2 of 3) 19333 ENSMUSG00000104232.1 ENSMUSG00000104232 ENSMUST00000193294 Gm37590 TEC Interval_89720 chr2 24981659 24981877 + 0 NA promoter-TSS (ENSMUSG00000036833.16) protein_coding-promoter-TSS (ENSMUSG00000036833.16) -4216 ENSMUSG00000084383.1 ENSMUSG00000084383 ENSMUST00000121309 Gm13370 processed_pseudogene Interval_72187 chr17 28491733 28491974 + 0 NA intron (ENSMUSG00000024222.17, intron 2 of 12) protein_coding-intron (ENSMUSG00000024222.17, intron 3 of 13) 25661 ENSMUSG00000024222.17 ENSMUSG00000024222 ENSMUST00000147716 Fkbp5 protein_coding Interval_53357 chr14 56598436 56599653 + 0 NA intron (ENSMUSG00000054509.7, intron 12 of 34) protein_coding-intron (ENSMUSG00000054509.7, intron 12 of 34) 21469 ENSMUSG00000090038.7 ENSMUSG00000090038 ENSMUST00000161382 Gm16573 antisense Interval_30244 chr11 91631209 91631630 + 0 NA Intergenic Intergenic -53861 ENSMUSG00000046755.5 ENSMUSG00000046755 ENSMUST00000061019 Kif2b protein_coding Interval_7918 chr1 134581054 134581234 + 0 NA intron (ENSMUSG00000042207.17, intron 1 of 25) protein_coding-intron (ENSMUSG00000042207.17, intron 1 of 26) -34194 ENSMUSG00000046367.10 ENSMUSG00000046367 ENSMUST00000185836 Mgat4e protein_coding Interval_84025 chr19 6180198 6183028 + 0 NA Intergenic Intergenic -2854 ENSMUSG00000024786.9 ENSMUSG00000024786 ENSMUST00000113528 Majin protein_coding Interval_169083 chr9 92028813 92029000 + 0 NA Intergenic Intergenic -67788 ENSMUSG00000109896.1 ENSMUSG00000109896 ENSMUST00000209894 Gm31409 lincRNA Interval_105157 chr3 82960649 82961279 + 0 NA intron (ENSMUSG00000102595.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000102595.1, intron 3 of 3) 34621 ENSMUSG00000102595.1 ENSMUSG00000102595 ENSMUST00000194580 Gm30097 lincRNA Interval_121888 chr5 9160995 9162609 + 0 NA promoter-TSS (ENSMUSG00000042508.16) protein_coding-promoter-TSS (ENSMUSG00000042508.16) -53 ENSMUSG00000042508.16 ENSMUSG00000042508 ENSMUST00000185100 Dmtf1 protein_coding Interval_153155 chr7 141911318 141912102 + 0 NA intron (ENSMUSG00000025139.14, intron 1 of 5) protein_coding-intron (ENSMUSG00000025139.14, intron 1 of 5) -9402 ENSMUSG00000025139.14 ENSMUSG00000025139 ENSMUST00000211231 Tollip protein_coding Interval_78399 chr18 12496302 12497106 + 0 NA intron (ENSMUSG00000024421.16, intron 35 of 74) protein_coding-intron (ENSMUSG00000024421.16, intron 35 of 74) 2758 ENSMUSG00000100090.1 ENSMUSG00000100090 ENSMUST00000187766 Gm29199 processed_pseudogene Interval_107237 chr3 104814806 104816049 + 0 NA intron (ENSMUSG00000002227.15, intron 1 of 1) protein_coding-intron (ENSMUSG00000002227.15, intron 1 of 19) 2689 ENSMUSG00000002227.15 ENSMUSG00000002227 ENSMUST00000145414 Mov10 protein_coding Interval_169194 chr9 95442028 95443469 + 0 NA Intergenic Intergenic 17118 ENSMUSG00000101459.1 ENSMUSG00000101459 ENSMUST00000190263 Gm19193 processed_pseudogene Interval_155973 chr8 41341422 41342726 + 0 NA intron (ENSMUSG00000031591.14, intron 2 of 2) protein_coding-intron (ENSMUSG00000031591.14, intron 13 of 13) 32699 ENSMUSG00000031591.14 ENSMUSG00000031591 ENSMUST00000143057 Asah1 protein_coding Interval_37422 chr12 68145926 68146243 + 0 NA Intergenic Intergenic 55677 ENSMUSG00000113674.1 ENSMUSG00000113674 ENSMUST00000222955 Hspe1-ps1 processed_pseudogene Interval_134351 chr6 26207840 26208115 + 0 NA Intergenic Intergenic -230896 ENSMUSG00000107127.1 ENSMUSG00000107127 ENSMUST00000202067 Gm6719 processed_pseudogene Interval_141354 chr6 127561019 127562169 + 0 NA intron (ENSMUSG00000061414.8, intron 1 of 18) protein_coding-intron (ENSMUSG00000061414.8, intron 1 of 18) 256 ENSMUSG00000061414.8 ENSMUSG00000061414 ENSMUST00000071563 Cracr2a protein_coding Interval_121569 chr5 3516715 3516935 + 0 NA intron (ENSMUSG00000040274.11, intron 6 of 7) protein_coding-intron (ENSMUSG00000040274.11, intron 5 of 6) -16753 ENSMUSG00000105534.1 ENSMUSG00000105534 ENSMUST00000196630 Gm42435 antisense Interval_111630 chr4 24863332 24863605 + 0 NA Intergenic Intergenic -34708 ENSMUSG00000028261.13 ENSMUSG00000028261 ENSMUST00000151249 Ndufaf4 protein_coding Interval_62510 chr15 93615070 93615302 + 0 NA Intergenic Intergenic 64463 ENSMUSG00000115993.1 ENSMUSG00000115993 ENSMUST00000231103 Zfp42-ps1 processed_pseudogene Interval_59326 chr15 51686521 51686882 + 0 NA Intergenic Intergenic -57066 ENSMUSG00000115563.1 ENSMUSG00000115563 ENSMUST00000227000 Gm34562 lincRNA Interval_163077 chr9 15041503 15041716 + 0 NA intron (ENSMUSG00000031934.14, intron 1 of 4) protein_coding-intron (ENSMUSG00000031934.14, intron 1 of 3) 2188 ENSMUSG00000031934.14 ENSMUSG00000031934 ENSMUST00000169288 Panx1 protein_coding Interval_139458 chr6 100314554 100315293 + 0 NA Intergenic Intergenic -28175 ENSMUSG00000072872.3 ENSMUSG00000072872 ENSMUST00000205164 Rybp protein_coding Interval_17791 chr10 80100588 80101572 + 0 NA exon (ENSMUSG00000035673.10, exon 1 of 32) protein_coding-exon (ENSMUSG00000035673.10, exon 1 of 32) 3290 ENSMUSG00000035673.10 ENSMUSG00000035673 ENSMUST00000217683 Sbno2 protein_coding Interval_85075 chr19 22251130 22251389 + 0 NA intron (ENSMUSG00000052387.16, intron 1 of 24) protein_coding-intron (ENSMUSG00000052387.16, intron 1 of 24) -15641 ENSMUSG00000088558.1 ENSMUSG00000088558 ENSMUST00000157933 Gm22506 snoRNA Interval_149967 chr7 103882865 103883295 + 0 NA promoter-TSS (ENSMUSG00000058200.2) protein_coding-promoter-TSS (ENSMUSG00000058200.2) -76 ENSMUSG00000083854.3 ENSMUSG00000083854 ENSMUST00000120890 Dnajc19-ps processed_pseudogene Interval_95004 chr2 102941108 102941462 + 0 NA Intergenic Intergenic -39827 ENSMUSG00000005087.17 ENSMUSG00000005087 ENSMUST00000124624 Cd44 protein_coding Interval_24523 chr11 33993033 33993373 + 0 NA promoter-TSS (ENSMUSG00000053519.17) protein_coding-promoter-TSS (ENSMUSG00000053519.17) -215 ENSMUSG00000053519.17 ENSMUSG00000053519 ENSMUST00000135034 Kcnip1 protein_coding Interval_167037 chr9 64747111 64747496 + 0 NA Intergenic Intergenic -20573 ENSMUSG00000104953.1 ENSMUSG00000104953 ENSMUST00000197528 Gm47308 miRNA Interval_149216 chr7 96342772 96343257 + 0 NA intron (ENSMUSG00000048078.16, intron 1 of 32) protein_coding-intron (ENSMUSG00000048078.16, intron 1 of 32) -1050 ENSMUSG00000085751.1 ENSMUSG00000085751 ENSMUST00000137193 Gm15412 antisense Interval_136072 chr6 50465268 50465498 + 0 NA Intergenic Intergenic 74651 ENSMUSG00000077357.1 ENSMUSG00000077357 ENSMUST00000104169 Gm26289 snoRNA Interval_40257 chr12 102794005 102794233 + 0 NA intron (ENSMUSG00000041702.7, intron 8 of 11) protein_coding-intron (ENSMUSG00000041702.7, intron 7 of 10) -29407 ENSMUSG00000114106.1 ENSMUSG00000114106 ENSMUST00000221771 Gm47042 processed_pseudogene Interval_39775 chr12 98153713 98154414 + 0 NA Intergenic Intergenic -45496 ENSMUSG00000112812.1 ENSMUSG00000112812 ENSMUST00000220264 Gm47415 lincRNA Interval_89050 chr2 15048701 15049702 + 0 NA promoter-TSS (ENSMUSG00000017418.14) protein_coding-promoter-TSS (ENSMUSG00000017418.14) 5683 ENSMUSG00000026707.15 ENSMUSG00000026707 ENSMUST00000194429 Nsun6 protein_coding Interval_173218 chrX 74304630 74305763 + 0 NA promoter-TSS (ENSMUSG00000015291.10) protein_coding-promoter-TSS (ENSMUSG00000015291.10) -117 ENSMUSG00000015291.10 ENSMUSG00000015291 ENSMUST00000135041 Gdi1 protein_coding Interval_92713 chr2 63700174 63700459 + 0 NA Intergenic Intergenic -268122 ENSMUSG00000065837.1 ENSMUSG00000065837 ENSMUST00000083903 Gm23503 snRNA Interval_78300 chr18 11828649 11828938 + 0 NA intron (ENSMUSG00000097440.2, intron 1 of 3) antisense-intron (ENSMUSG00000097440.2, intron 1 of 3) 11645 ENSMUSG00000084565.1 ENSMUSG00000084565 ENSMUST00000122616 Mir1901 miRNA Interval_68821 chr16 87364654 87364940 + 0 NA exon (ENSMUSG00000044442.11, exon 4 of 4) protein_coding-exon (ENSMUSG00000044442.11, exon 4 of 4) 10554 ENSMUSG00000044442.11 ENSMUSG00000044442 ENSMUST00000118115 N6amt1 protein_coding Interval_160174 chr8 106932471 106932884 + 0 NA Intergenic Intergenic -3073 ENSMUSG00000041308.6 ENSMUSG00000041308 ENSMUST00000212298 Sntb2 protein_coding Interval_110024 chr3 152568188 152569580 + 0 NA intron (ENSMUSG00000039058.11, intron 6 of 13) protein_coding-intron (ENSMUSG00000039058.11, intron 6 of 13) -42132 ENSMUSG00000039058.11 ENSMUSG00000039058 ENSMUST00000198552 Ak5 protein_coding Interval_44243 chr13 42822351 42822861 + 0 NA intron (ENSMUSG00000054728.17, intron 3 of 13) protein_coding-intron (ENSMUSG00000054728.17, intron 1 of 11) -34348 ENSMUSG00000089710.1 ENSMUSG00000089710 ENSMUST00000160241 Gm15810 antisense Interval_60036 chr15 64133905 64135326 + 0 NA intron (ENSMUSG00000022377.16, intron 16 of 30) protein_coding-intron (ENSMUSG00000022377.16, intron 16 of 30) -10809 ENSMUSG00000022377.16 ENSMUSG00000022377 ENSMUST00000175963 Asap1 protein_coding Interval_151154 chr7 118855235 118856442 + 0 NA promoter-TSS (ENSMUSG00000030980.17) protein_coding-promoter-TSS (ENSMUSG00000030980.17) 86 ENSMUSG00000073856.11 ENSMUSG00000073856 ENSMUST00000132148 Iqck protein_coding Interval_127754 chr5 107379547 107380540 + 0 NA intron (ENSMUSG00000029279.15, intron 5 of 5) protein_coding-intron (ENSMUSG00000029279.15, intron 18 of 18) 1974 ENSMUSG00000081798.1 ENSMUSG00000081798 ENSMUST00000120842 Gm8152 processed_pseudogene Interval_169301 chr9 96254308 96254920 + 0 NA intron (ENSMUSG00000032411.15, intron 3 of 6) protein_coding-intron (ENSMUSG00000032411.15, intron 3 of 12) 15487 ENSMUSG00000100382.1 ENSMUSG00000100382 ENSMUST00000190012 Gm28924 processed_pseudogene Interval_61167 chr15 79627047 79629076 + 0 NA promoter-TSS (ENSMUSG00000042564.13) protein_coding-promoter-TSS (ENSMUSG00000042564.13) 30863 ENSMUSG00000042564.13 ENSMUSG00000042564 ENSMUST00000231126 Fam227a protein_coding Interval_147169 chr7 64021659 64023030 + 0 NA Intergenic Intergenic 14575 ENSMUSG00000108393.1 ENSMUSG00000108393 ENSMUST00000206557 Gm32633 lincRNA Interval_98726 chr2 154527606 154527882 + 0 NA intron (ENSMUSG00000038533.15, intron 1 of 2) protein_coding-intron (ENSMUSG00000038533.15, intron 8 of 10) -19341 ENSMUSG00000038523.10 ENSMUSG00000038523 ENSMUST00000109709 1700003F12Rik protein_coding Interval_56080 chr14 105417243 105417514 + 0 NA Intergenic Intergenic -10181 ENSMUSG00000115548.1 ENSMUSG00000115548 ENSMUST00000226670 5430440P10Rik lincRNA Interval_173410 chrX 90426183 90426504 + 0 NA Intergenic Intergenic -6971 ENSMUSG00000082479.3 ENSMUSG00000082479 ENSMUST00000120395 Gm4746 processed_pseudogene Interval_47447 chr13 84365786 84366997 + 0 NA Intergenic Intergenic -26278 ENSMUSG00000098245.1 ENSMUSG00000098245 ENSMUST00000182385 Gm26927 processed_pseudogene Interval_129753 chr5 122129099 122129581 + 0 NA TTS (ENSMUSG00000043036.13) protein_coding-TTS (ENSMUSG00000043036.13) -18227 ENSMUSG00000043036.13 ENSMUSG00000043036 ENSMUST00000196608 Ccdc63 protein_coding Interval_154715 chr8 22805244 22806080 + 0 NA promoter-TSS (ENSMUSG00000031539.6) protein_coding-promoter-TSS (ENSMUSG00000031539.6) -40 ENSMUSG00000031539.6 ENSMUSG00000031539 ENSMUST00000210476 Ap3m2 protein_coding Interval_150830 chr7 115315277 115315570 + 0 NA Intergenic Intergenic 143150 ENSMUSG00000099211.1 ENSMUSG00000099211 ENSMUST00000183778 Gm27684 miRNA Interval_72570 chr17 30726996 30728151 + 0 NA intron (ENSMUSG00000033826.10, intron 4 of 5) protein_coding-intron (ENSMUSG00000033826.10, intron 39 of 92) 54556 ENSMUSG00000094785.1 ENSMUSG00000094785 ENSMUST00000083205 Gm24661 snRNA Interval_52583 chr14 47679696 47680646 + 0 NA intron (ENSMUSG00000021843.17, intron 6 of 38) protein_coding-intron (ENSMUSG00000021843.17, intron 6 of 41) 16384 ENSMUSG00000021843.17 ENSMUSG00000021843 ENSMUST00000190857 Ktn1 protein_coding Interval_58756 chr15 37795242 37795723 + 0 NA Intergenic Intergenic -30081 ENSMUSG00000086313.1 ENSMUSG00000086313 ENSMUST00000156011 Gm15940 sense_intronic Interval_84709 chr19 15804691 15805553 + 0 NA exon (ENSMUSG00000117995.1, exon 2 of 2) lincRNA-exon (ENSMUSG00000117995.1, exon 2 of 2) 2064 ENSMUSG00000117995.1 ENSMUSG00000117995 ENSMUST00000237461 Gm50348 lincRNA Interval_135571 chr6 40594394 40594874 + 0 NA Intergenic Intergenic -8844 ENSMUSG00000029915.14 ENSMUSG00000029915 ENSMUST00000177178 Clec5a protein_coding Interval_55865 chr14 101656357 101656551 + 0 NA intron (ENSMUSG00000022111.9, intron 2 of 8) protein_coding-intron (ENSMUSG00000022111.9, intron 2 of 8) 2429 ENSMUSG00000022111.9 ENSMUSG00000022111 ENSMUST00000226340 Uchl3 protein_coding Interval_140014 chr6 113418735 113419941 + 0 NA promoter-TSS (ENSMUSG00000051169.14) protein_coding-promoter-TSS (ENSMUSG00000051169.14) -2812 ENSMUSG00000095146.2 ENSMUSG00000095146 ENSMUST00000104625 Gm24387 miRNA Interval_119332 chr4 136914203 136914727 + 0 NA Intergenic Intergenic -15662 ENSMUSG00000036887.5 ENSMUSG00000036887 ENSMUST00000046285 C1qa protein_coding Interval_166427 chr9 59398650 59399075 + 0 NA intron (ENSMUSG00000025234.11, intron 1 of 2) protein_coding-intron (ENSMUSG00000025234.11, intron 9 of 11) -71349 ENSMUSG00000025235.8 ENSMUSG00000025235 ENSMUST00000214225 Bbs4 protein_coding Interval_149403 chr7 98157537 98158635 + 0 NA intron (ENSMUSG00000035547.14, intron 1 of 2) protein_coding-intron (ENSMUSG00000035547.14, intron 2 of 12) 6876 ENSMUSG00000035547.14 ENSMUSG00000035547 ENSMUST00000129430 Capn5 protein_coding Interval_152131 chr7 129779414 129780802 + 0 NA Intergenic Intergenic -52938 ENSMUSG00000108576.1 ENSMUSG00000108576 ENSMUST00000206447 Gm44778 lincRNA Interval_77460 chr17 89036262 89036634 + 0 NA intron (ENSMUSG00000032937.5, intron 4 of 9) protein_coding-intron (ENSMUSG00000032937.5, intron 4 of 9) 164227 ENSMUSG00000032937.5 ENSMUSG00000032937 ENSMUST00000035701 Fshr protein_coding Interval_153018 chr7 140902735 140903775 + 0 NA Intergenic Intergenic -2793 ENSMUSG00000109628.1 ENSMUSG00000109628 ENSMUST00000209496 BC024386 processed_transcript Interval_56732 chr14 121719758 121720325 + 0 NA intron (ENSMUSG00000025558.19, intron 1 of 52) protein_coding-intron (ENSMUSG00000025558.19, intron 1 of 52) 18820 ENSMUSG00000025558.19 ENSMUSG00000025558 ENSMUST00000238406 Dock9 protein_coding Interval_115977 chr4 106740221 106740422 + 0 NA intron (ENSMUSG00000034871.2, intron 2 of 7) protein_coding-intron (ENSMUSG00000034871.2, intron 2 of 7) 6432 ENSMUSG00000034871.2 ENSMUSG00000034871 ENSMUST00000047620 Fam151a protein_coding Interval_39612 chr12 91553235 91554603 + 0 NA Intergenic Intergenic 19653 ENSMUSG00000080365.1 ENSMUSG00000080365 ENSMUST00000116715 Gm25776 snoRNA Interval_58113 chr15 28024293 28026483 + 0 NA promoter-TSS (ENSMUSG00000022263.10) protein_coding-promoter-TSS (ENSMUSG00000022263.10) -15621 ENSMUSG00000115058.1 ENSMUSG00000115058 ENSMUST00000227963 Gm19883 processed_pseudogene Interval_49896 chr13 117975275 117976142 + 0 NA exon (ENSMUSG00000021730.8, exon 8 of 8) protein_coding-exon (ENSMUSG00000021730.8, exon 8 of 8) -60906 ENSMUSG00000088155.1 ENSMUSG00000088155 ENSMUST00000157530 Gm26349 snoRNA Interval_1116 chr1 15827060 15828881 + 0 NA intron (ENSMUSG00000025925.14, intron 6 of 9) protein_coding-intron (ENSMUSG00000025925.14, intron 5 of 8) 20329 ENSMUSG00000025925.14 ENSMUSG00000025925 ENSMUST00000188684 Terf1 protein_coding Interval_148501 chr7 81866843 81868722 + 0 NA intron (ENSMUSG00000038623.9, intron 3 of 7) protein_coding-intron (ENSMUSG00000038623.9, intron 3 of 9) -1951 ENSMUSG00000038623.9 ENSMUSG00000038623 ENSMUST00000130006 Tm6sf1 protein_coding Interval_134054 chr6 18208878 18209096 + 0 NA intron (ENSMUSG00000041301.15, intron 3 of 27) protein_coding-intron (ENSMUSG00000041301.15, intron 3 of 26) -46237 ENSMUSG00000041301.15 ENSMUSG00000041301 ENSMUST00000140532 Cftr protein_coding Interval_146549 chr7 46763605 46764991 + 0 NA TTS (ENSMUSG00000014418.16) protein_coding-TTS (ENSMUSG00000014418.16) 4794 ENSMUSG00000014418.16 ENSMUSG00000014418 ENSMUST00000123725 Hps5 protein_coding Interval_12846 chr10 6349214 6350132 + 0 NA Intergenic Intergenic -18003 ENSMUSG00000112179.1 ENSMUSG00000112179 ENSMUST00000219296 Gm3213 processed_pseudogene Interval_159868 chr8 104492745 104493145 + 0 NA intron (ENSMUSG00000052616.10, intron 8 of 17) protein_coding-intron (ENSMUSG00000052616.10, intron 9 of 19) -14957 ENSMUSG00000077633.1 ENSMUSG00000077633 ENSMUST00000104445 Gm22148 snRNA Interval_71683 chr17 25400385 25400865 + 0 NA intron (ENSMUSG00000024112.16, intron 2 of 8) protein_coding-intron (ENSMUSG00000024112.16, intron 2 of 34) -11153 ENSMUSG00000024112.16 ENSMUSG00000024112 ENSMUST00000159052 Cacna1h protein_coding Interval_111042 chr4 11453609 11454092 + 0 NA Intergenic Intergenic -32193 ENSMUSG00000040720.15 ENSMUSG00000040720 ENSMUST00000108307 Virma protein_coding Interval_149625 chr7 100136935 100137439 + 0 NA Intergenic Intergenic -22172 ENSMUSG00000030725.4 ENSMUSG00000030725 ENSMUST00000207825 Lipt2 protein_coding Interval_101555 chr3 5687574 5688027 + 0 NA Intergenic Intergenic -63006 ENSMUSG00000103034.1 ENSMUSG00000103034 ENSMUST00000192045 Gm8797 protein_coding Interval_65914 chr16 30211505 30211805 + 0 NA Intergenic Intergenic -5776 ENSMUSG00000097621.1 ENSMUSG00000097621 ENSMUST00000181113 Gm26562 lincRNA Interval_5334 chr1 87675721 87676844 + 0 NA promoter-TSS (ENSMUSG00000026288.14) protein_coding-promoter-TSS (ENSMUSG00000026288.14) 43 ENSMUSG00000026288.14 ENSMUSG00000026288 ENSMUST00000163548 Inpp5d protein_coding Interval_68591 chr16 80072374 80072631 + 0 NA Intergenic Intergenic -64850 ENSMUSG00000088476.1 ENSMUSG00000088476 ENSMUST00000157851 Gm23083 snoRNA Interval_49029 chr13 107070643 107070985 + 0 NA intron (ENSMUSG00000114311.1, intron 2 of 3) lincRNA-intron (ENSMUSG00000114311.1, intron 2 of 3) 7121 ENSMUSG00000114311.1 ENSMUSG00000114311 ENSMUST00000224729 Gm31452 lincRNA Interval_28203 chr11 74270116 74270338 + 0 NA exon (ENSMUSG00000070375.7, exon 1 of 1) protein_coding-exon (ENSMUSG00000070375.7, exon 1 of 1) -3991 ENSMUSG00000081864.2 ENSMUSG00000081864 ENSMUST00000120649 Olfr405-ps1 transcribed_unprocessed_pseudogene Interval_47170 chr13 77005809 77006011 + 0 NA intron (ENSMUSG00000021596.16, intron 17 of 20) protein_coding-intron (ENSMUSG00000021596.16, intron 17 of 20) 70747 ENSMUSG00000090119.1 ENSMUSG00000090119 ENSMUST00000160999 Gm8185 processed_pseudogene Interval_55122 chr14 78288555 78290336 + 0 NA intron (ENSMUSG00000022015.8, intron 2 of 4) protein_coding-intron (ENSMUSG00000022015.8, intron 2 of 4) 18598 ENSMUSG00000022015.8 ENSMUSG00000022015 ENSMUST00000022592 Tnfsf11 protein_coding Interval_97894 chr2 145031580 145031977 + 0 NA Intergenic Intergenic -100100 ENSMUSG00000082858.1 ENSMUSG00000082858 ENSMUST00000119843 Gm11746 processed_pseudogene Interval_73670 chr17 42630909 42631175 + 0 NA Intergenic Intergenic -19647 ENSMUSG00000043972.8 ENSMUSG00000043972 ENSMUST00000068355 Opn5 protein_coding Interval_153260 chr7 142996197 142996417 + 0 NA intron (ENSMUSG00000052281.14, intron 1 of 4) antisense-intron (ENSMUSG00000052281.14, intron 1 of 4) -5529 ENSMUSG00000052281.14 ENSMUSG00000052281 ENSMUST00000131740 Tspan32os antisense Interval_149837 chr7 101924934 101926495 + 0 NA intron (ENSMUSG00000064307.13, intron 1 of 4) protein_coding-intron (ENSMUSG00000064307.13, intron 1 of 5) -4940 ENSMUSG00000064307.13 ENSMUSG00000064307 ENSMUST00000106963 Lrrc51 protein_coding Interval_149880 chr7 102189203 102190362 + 0 NA intron (ENSMUSG00000063550.8, intron 5 of 22) protein_coding-intron (ENSMUSG00000063550.8, intron 5 of 22) -6217 ENSMUSG00000063550.8 ENSMUSG00000063550 ENSMUST00000211375 Nup98 protein_coding Interval_172726 chrX 47970393 47971958 + 0 NA Intergenic Intergenic 32784 ENSMUSG00000001173.15 ENSMUSG00000001173 ENSMUST00000115013 Ocrl protein_coding Interval_173754 chrX 103468753 103469211 + 0 NA TTS (ENSMUSG00000098743.1) misc_RNA-TTS (ENSMUSG00000098743.1) 814 ENSMUSG00000098743.1 ENSMUSG00000098743 ENSMUST00000183791 Gm27927 misc_RNA Interval_81717 chr18 63863557 63864633 + 0 NA intron (ENSMUSG00000040560.10, intron 19 of 19) protein_coding-intron (ENSMUSG00000040560.10, intron 20 of 27) 34936 ENSMUSG00000118258.1 ENSMUSG00000118258 ENSMUST00000237352 Gm19076 processed_pseudogene Interval_103136 chr3 35818052 35818390 + 0 NA intron (ENSMUSG00000037400.17, intron 18 of 21) protein_coding-intron (ENSMUSG00000037400.17, intron 18 of 29) -20828 ENSMUSG00000037400.17 ENSMUSG00000037400 ENSMUST00000197764 Atp11b protein_coding Interval_66858 chr16 38161994 38162545 + 0 NA intron (ENSMUSG00000022812.14, intron 2 of 5) protein_coding-intron (ENSMUSG00000022812.14, intron 2 of 10) 4261 ENSMUSG00000105863.1 ENSMUSG00000105863 ENSMUST00000198387 Gm25617 snoRNA Interval_101065 chr2 174851548 174852426 + 0 NA intron (ENSMUSG00000087215.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000087215.1, intron 1 of 1) 1370 ENSMUSG00000087215.1 ENSMUSG00000087215 ENSMUST00000149377 Gm14618 lincRNA Interval_59403 chr15 52394473 52394645 + 0 NA Intergenic Intergenic -50563 ENSMUSG00000115241.1 ENSMUSG00000115241 ENSMUST00000227624 Gm41322 lincRNA Interval_91352 chr2 38083462 38083723 + 0 NA intron (ENSMUSG00000035392.17, intron 4 of 5) protein_coding-intron (ENSMUSG00000035392.17, intron 5 of 21) 23704 ENSMUSG00000107529.1 ENSMUSG00000107529 ENSMUST00000203102 Gm44291 TEC Interval_117959 chr4 127341559 127342607 + 0 NA Intergenic Intergenic 11998 ENSMUSG00000046623.8 ENSMUSG00000046623 ENSMUST00000060419 Gjb4 protein_coding Interval_118333 chr4 130328377 130328658 + 0 NA intron (ENSMUSG00000028772.19, intron 4 of 5) protein_coding-intron (ENSMUSG00000028772.19, intron 6 of 7) -19844 ENSMUSG00000073752.2 ENSMUSG00000073752 ENSMUST00000097865 Gm10570 antisense Interval_130750 chr5 130143955 130145363 + 0 NA promoter-TSS (ENSMUSG00000034110.8) protein_coding-promoter-TSS (ENSMUSG00000034110.8) -265 ENSMUSG00000034110.8 ENSMUSG00000034110 ENSMUST00000144467 Kctd7 protein_coding Interval_150690 chr7 113368796 113370168 + 0 NA promoter-TSS (ENSMUSG00000038187.14) protein_coding-promoter-TSS (ENSMUSG00000038187.14) 19088 ENSMUSG00000059077.6 ENSMUSG00000059077 ENSMUST00000079793 Pth protein_coding Interval_122509 chr5 23490918 23491387 + 0 NA intron (ENSMUSG00000029004.15, intron 2 of 4) protein_coding-intron (ENSMUSG00000029004.15, intron 14 of 25) -3429 ENSMUSG00000088170.1 ENSMUSG00000088170 ENSMUST00000157545 Gm25219 misc_RNA Interval_111478 chr4 21972380 21973124 + 0 NA intron (ENSMUSG00000028246.13, intron 4 of 5) protein_coding-intron (ENSMUSG00000028246.13, intron 4 of 5) 14296 ENSMUSG00000028246.13 ENSMUSG00000028246 ENSMUST00000155220 Faxc protein_coding Interval_85657 chr19 29398281 29398879 + 0 NA Intergenic Intergenic -18989 ENSMUSG00000117964.1 ENSMUSG00000117964 ENSMUST00000236682 Gm36043 antisense Interval_133371 chr6 4086503 4087450 + 0 NA promoter-TSS (ENSMUSG00000032757.6) protein_coding-promoter-TSS (ENSMUSG00000032757.6) -46 ENSMUSG00000032757.6 ENSMUSG00000032757 ENSMUST00000205191 Bet1 protein_coding Interval_54833 chr14 75696028 75696251 + 0 NA intron (ENSMUSG00000022002.2, intron 13 of 13) protein_coding-intron (ENSMUSG00000022002.2, intron 13 of 13) 36848 ENSMUSG00000034893.9 ENSMUSG00000034893 ENSMUST00000228081 Cog3 protein_coding Interval_92058 chr2 52922815 52924355 + 0 NA intron (ENSMUSG00000036053.17, intron 1 of 26) protein_coding-intron (ENSMUSG00000036053.17, intron 1 of 26) 65725 ENSMUSG00000036053.17 ENSMUSG00000036053 ENSMUST00000050719 Fmnl2 protein_coding Interval_24479 chr11 33560861 33561294 + 0 NA intron (ENSMUSG00000020159.8, intron 6 of 9) protein_coding-intron (ENSMUSG00000020159.8, intron 6 of 9) 17882 ENSMUSG00000020159.8 ENSMUSG00000020159 ENSMUST00000135350 Gabrp protein_coding Interval_18247 chr10 84248096 84248305 + 0 NA Intergenic Intergenic -26143 ENSMUSG00000111062.1 ENSMUSG00000111062 ENSMUST00000216890 Gm47253 lincRNA Interval_61036 chr15 78899700 78900367 + 0 NA promoter-TSS (ENSMUSG00000022436.16) protein_coding-promoter-TSS (ENSMUSG00000022436.16) 366 ENSMUSG00000116069.1 ENSMUSG00000116069 ENSMUST00000134703 Gm49510 protein_coding Interval_167516 chr9 70194464 70195354 + 0 NA Intergenic Intergenic -12441 ENSMUSG00000032220.10 ENSMUSG00000032220 ENSMUST00000034745 Myo1e protein_coding Interval_92949 chr2 68902367 68902884 + 0 NA intron (ENSMUSG00000027035.10, intron 1 of 10) protein_coding-intron (ENSMUSG00000027035.10, intron 1 of 9) -3378 ENSMUSG00000103747.1 ENSMUSG00000103747 ENSMUST00000192661 Gm38236 TEC Interval_70778 chr17 14417577 14418433 + 0 NA Intergenic Intergenic 4515 ENSMUSG00000116688.2 ENSMUSG00000116688 ENSMUST00000231488 Gm49720 processed_pseudogene Interval_36734 chr12 52718897 52719904 + 0 NA intron (ENSMUSG00000061603.8, intron 1 of 13) protein_coding-intron (ENSMUSG00000061603.8, intron 1 of 13) 33708 ENSMUSG00000112251.1 ENSMUSG00000112251 ENSMUST00000219288 Gm47488 processed_pseudogene Interval_69277 chr16 91845195 91845887 + 0 NA intron (ENSMUSG00000022957.20, intron 3 of 5) protein_coding-intron (ENSMUSG00000022957.20, intron 19 of 28) -58522 ENSMUSG00000022957.20 ENSMUSG00000022957 ENSMUST00000137575 Itsn1 protein_coding Interval_98758 chr2 154762136 154763447 + 0 NA Intergenic Intergenic 7239 ENSMUSG00000098640.1 ENSMUSG00000098640 ENSMUST00000185009 Gm14214 protein_coding Interval_117940 chr4 127208758 127209587 + 0 NA intron (ENSMUSG00000042388.14, intron 1 of 2) protein_coding-intron (ENSMUSG00000042388.14, intron 5 of 11) 5866 ENSMUSG00000042388.14 ENSMUSG00000042388 ENSMUST00000137062 Dlgap3 protein_coding Interval_121855 chr5 8857550 8857841 + 0 NA intron (ENSMUSG00000028970.9, intron 2 of 3) protein_coding-intron (ENSMUSG00000028970.9, intron 25 of 27) 6308 ENSMUSG00000028970.9 ENSMUSG00000028970 ENSMUST00000196048 Abcb1b protein_coding Interval_31049 chr11 97875467 97875806 + 0 NA intron (ENSMUSG00000070336.3, intron 3 of 10) protein_coding-intron (ENSMUSG00000070336.3, intron 3 of 10) -8958 ENSMUSG00000086917.1 ENSMUSG00000086917 ENSMUST00000152825 Gm11630 lincRNA Interval_88021 chr19 57998077 57998830 + 0 NA intron (ENSMUSG00000054843.9, intron 27 of 28) protein_coding-intron (ENSMUSG00000054843.9, intron 27 of 28) -52714 ENSMUSG00000093757.1 ENSMUSG00000093757 ENSMUST00000176631 Mir5623 miRNA Interval_122530 chr5 23612817 23613163 + 0 NA intron (ENSMUSG00000062604.11, intron 2 of 5) protein_coding-intron (ENSMUSG00000062604.11, intron 1 of 14) 61391 ENSMUSG00000088359.1 ENSMUSG00000088359 ENSMUST00000157734 Gm24009 rRNA Interval_137222 chr6 70286822 70287450 + 0 NA Intergenic Intergenic -8041 ENSMUSG00000079230.1 ENSMUSG00000079230 ENSMUST00000111462 Gm11065 pseudogene Interval_106753 chr3 100473016 100473709 + 0 NA exon (ENSMUSG00000044468.14, exon 2 of 2) protein_coding-exon (ENSMUSG00000044468.14, exon 2 of 2) 15832 ENSMUSG00000044468.14 ENSMUSG00000044468 ENSMUST00000061455 Tent5c protein_coding Interval_143689 chr7 14622195 14623924 + 0 NA promoter-TSS (ENSMUSG00000041596.12) transcribed_unprocessed_pseudogene-promoter-TSS (ENSMUSG00000041596.12) -4504 ENSMUSG00000041596.12 ENSMUSG00000041596 ENSMUST00000190796 Nlrp5-ps transcribed_unprocessed_pseudogene Interval_95601 chr2 112676201 112677421 + 0 NA intron (ENSMUSG00000057378.15, intron 72 of 103) protein_coding-intron (ENSMUSG00000057378.15, intron 71 of 102) -20263 ENSMUSG00000057378.15 ENSMUSG00000057378 ENSMUST00000208135 Ryr3 protein_coding Interval_117521 chr4 124349283 124349703 + 0 NA Intergenic Intergenic -13812 ENSMUSG00000088933.1 ENSMUSG00000088933 ENSMUST00000158308 Gm22983 snRNA Interval_77363 chr17 88255765 88257395 + 0 NA intron (ENSMUSG00000117351.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000117351.1, intron 1 of 1) 48798 ENSMUSG00000117497.1 ENSMUSG00000117497 ENSMUST00000234925 1700116H05Rik lincRNA Interval_61530 chr15 82197820 82198044 + 0 NA promoter-TSS (ENSMUSG00000065465.1) miRNA-promoter-TSS (ENSMUSG00000065465.1) -190 ENSMUSG00000065465.1 ENSMUSG00000065465 ENSMUST00000083531 Mir33 miRNA Interval_136870 chr6 62008292 62008593 + 0 NA intron (ENSMUSG00000039578.17, intron 10 of 10) protein_coding-intron (ENSMUSG00000039578.17, intron 9 of 9) 33344 ENSMUSG00000108246.1 ENSMUSG00000108246 ENSMUST00000203440 Gm43896 TEC Interval_108777 chr3 131212170 131212670 + 0 NA intron (ENSMUSG00000027985.14, intron 11 of 11) protein_coding-intron (ENSMUSG00000027985.14, intron 11 of 11) 59604 ENSMUSG00000027984.8 ENSMUSG00000027984 ENSMUST00000152427 Hadh protein_coding Interval_110545 chr4 3808985 3809646 + 0 NA promoter-TSS (ENSMUSG00000055216.3) pseudogene-promoter-TSS (ENSMUSG00000055216.3) -564 ENSMUSG00000055216.3 ENSMUSG00000055216 ENSMUST00000068663 9430025C20Rik pseudogene Interval_149132 chr7 94418565 94418920 + 0 NA intron (ENSMUSG00000108532.1, intron 2 of 2) lincRNA-intron (ENSMUSG00000108532.1, intron 2 of 2) -46170 ENSMUSG00000108315.1 ENSMUSG00000108315 ENSMUST00000206678 Gm44601 lincRNA Interval_79522 chr18 32744843 32745928 + 0 NA Intergenic Intergenic -71475 ENSMUSG00000024379.4 ENSMUSG00000024379 ENSMUST00000234876 Tslp protein_coding Interval_58962 chr15 41007403 41008936 + 0 NA intron (ENSMUSG00000022306.9, intron 5 of 7) protein_coding-intron (ENSMUSG00000022306.9, intron 5 of 7) 10209 ENSMUSG00000115898.1 ENSMUSG00000115898 ENSMUST00000230853 Gm49524 TEC Interval_162548 chr9 4138493 4139345 + 0 NA Intergenic Intergenic -75003 ENSMUSG00000110691.1 ENSMUSG00000110691 ENSMUST00000211927 Gm5363 processed_pseudogene Interval_35068 chr12 17033119 17033328 + 0 NA Intergenic Intergenic -21669 ENSMUSG00000071398.8 ENSMUSG00000071398 ENSMUST00000189479 2410004P03Rik protein_coding Interval_45295 chr13 54118041 54118889 + 0 NA Intergenic Intergenic -22470 ENSMUSG00000114042.1 ENSMUSG00000114042 ENSMUST00000220543 Gm18473 processed_pseudogene Interval_160815 chr8 112678716 112679074 + 0 NA intron (ENSMUSG00000031772.17, intron 3 of 20) protein_coding-intron (ENSMUSG00000031772.17, intron 3 of 23) -94759 ENSMUSG00000031772.17 ENSMUSG00000031772 ENSMUST00000140753 Cntnap4 protein_coding Interval_109856 chr3 149000980 149001796 + 0 NA intron (ENSMUSG00000104786.1, intron 2 of 2) antisense-intron (ENSMUSG00000104786.1, intron 2 of 2) -4108 ENSMUSG00000105876.1 ENSMUSG00000105876 ENSMUST00000196494 Gm43572 processed_transcript Interval_19423 chr10 99127144 99127944 + 0 NA intron (ENSMUSG00000019952.15, intron 3 of 12) protein_coding-intron (ENSMUSG00000019952.15, intron 3 of 11) -1219 ENSMUSG00000055108.6 ENSMUSG00000055108 ENSMUST00000060761 Phxr2 protein_coding Interval_5983 chr1 93714726 93715375 + 0 NA promoter-TSS (ENSMUSG00000026279.14) protein_coding-promoter-TSS (ENSMUSG00000026279.14) -16054 ENSMUSG00000101952.1 ENSMUSG00000101952 ENSMUST00000188846 Gm10550 antisense Interval_15364 chr10 45098108 45099504 + 0 NA intron (ENSMUSG00000019849.11, intron 6 of 14) protein_coding-intron (ENSMUSG00000019849.11, intron 6 of 14) -3098 ENSMUSG00000077082.1 ENSMUSG00000077082 ENSMUST00000103894 Gm23766 miRNA Interval_158388 chr8 83311615 83311921 + 0 NA TTS (ENSMUSG00000035151.12) protein_coding-TTS (ENSMUSG00000035151.12) 20718 ENSMUSG00000035151.12 ENSMUSG00000035151 ENSMUST00000126079 Elmod2 protein_coding Interval_157598 chr8 71633278 71634763 + 0 NA TTS (ENSMUSG00000034799.16) protein_coding-TTS (ENSMUSG00000034799.16) -2914 ENSMUSG00000098976.1 ENSMUSG00000098976 ENSMUST00000184793 Mir6769b miRNA Interval_74776 chr17 56479401 56479861 + 0 NA Intergenic Intergenic 32800 ENSMUSG00000044526.3 ENSMUSG00000044526 ENSMUST00000052211 Znrf4 protein_coding Interval_15164 chr10 43014890 43015193 + 0 NA intron (ENSMUSG00000038248.8, intron 6 of 6) protein_coding-intron (ENSMUSG00000038248.8, intron 6 of 6) -19952 ENSMUSG00000111171.1 ENSMUSG00000111171 ENSMUST00000213469 Gm47815 antisense Interval_54602 chr14 71043741 71043969 + 0 NA Intergenic Intergenic -43415 ENSMUSG00000115671.1 ENSMUSG00000115671 ENSMUST00000227525 Gm49289 lincRNA Interval_63751 chr15 103234224 103234415 + 0 NA intron (ENSMUSG00000009575.14, intron 1 of 4) protein_coding-intron (ENSMUSG00000009575.14, intron 1 of 4) -6175 ENSMUSG00000046434.16 ENSMUSG00000046434 ENSMUST00000231141 Hnrnpa1 protein_coding Interval_141687 chr6 133459368 133459697 + 0 NA Intergenic Intergenic -69690 ENSMUSG00000095412.3 ENSMUSG00000095412 ENSMUST00000203357 Gm5885 transcribed_unprocessed_pseudogene Interval_88060 chr19 58627783 58628400 + 0 NA intron (ENSMUSG00000100001.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000100001.1, intron 1 of 2) 21762 ENSMUSG00000100001.1 ENSMUSG00000100001 ENSMUST00000187629 1810007D17Rik lincRNA Interval_172212 chrX 9595783 9596798 + 0 NA Intergenic Intergenic -22512 ENSMUSG00000118573.1 ENSMUSG00000118573 ENSMUST00000238955 AL671118.1 processed_pseudogene Interval_124922 chr5 60831620 60831993 + 0 NA Intergenic Intergenic -9379 ENSMUSG00000104775.1 ENSMUSG00000104775 ENSMUST00000197863 Gm8182 processed_pseudogene Interval_78762 chr18 20488314 20490576 + 0 NA Intergenic Intergenic -9870 ENSMUSG00000117480.1 ENSMUSG00000117480 ENSMUST00000234005 Gm5688 processed_pseudogene Interval_171319 chr9 116327644 116327957 + 0 NA intron (ENSMUSG00000110752.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000110752.1, intron 1 of 1) -3368 ENSMUSG00000110752.1 ENSMUSG00000110752 ENSMUST00000217456 D730003K21Rik lincRNA Interval_125030 chr5 63964665 63965015 + 0 NA intron (ENSMUSG00000047881.14, intron 1 of 1) protein_coding-intron (ENSMUSG00000047881.14, intron 1 of 7) 26031 ENSMUSG00000106076.1 ENSMUSG00000106076 ENSMUST00000199444 Gm43840 processed_pseudogene Interval_40121 chr12 101748511 101748728 + 0 NA exon (ENSMUSG00000021186.9, exon 11 of 11) protein_coding-exon (ENSMUSG00000021186.9, exon 11 of 11) -30096 ENSMUSG00000021187.14 ENSMUSG00000021187 ENSMUST00000160830 Tc2n protein_coding Interval_2212 chr1 37075343 37075962 + 0 NA intron (ENSMUSG00000050122.19, intron 7 of 26) protein_coding-intron (ENSMUSG00000050122.19, intron 6 of 24) 46319 ENSMUSG00000050122.19 ENSMUSG00000050122 ENSMUST00000194320 Vwa3b protein_coding Interval_34458 chr12 4333774 4334058 + 0 NA intron (ENSMUSG00000020647.10, intron 1 of 10) protein_coding-intron (ENSMUSG00000020647.10, intron 6 of 22) 10584 ENSMUSG00000020647.10 ENSMUSG00000020647 ENSMUST00000219715 Ncoa1 protein_coding Interval_98444 chr2 152396014 152399415 + 0 NA exon (ENSMUSG00000051817.8, exon 1 of 2) protein_coding-exon (ENSMUSG00000051817.8, exon 1 of 2) 349 ENSMUSG00000051817.8 ENSMUSG00000051817 ENSMUST00000063332 Sox12 protein_coding Interval_166002 chr9 55326180 55327523 + 0 NA promoter-TSS (ENSMUSG00000032313.11) protein_coding-promoter-TSS (ENSMUSG00000032313.11) -6350 ENSMUSG00000032313.11 ENSMUSG00000032313 ENSMUST00000130465 Tmem266 protein_coding Interval_112455 chr4 41364029 41364451 + 0 NA intron (ENSMUSG00000028437.14, intron 1 of 2) protein_coding-intron (ENSMUSG00000028437.14, intron 1 of 6) -7008 ENSMUSG00000028437.14 ENSMUSG00000028437 ENSMUST00000132235 Ubap1 protein_coding Interval_112418 chr4 41141863 41143402 + 0 NA intron (ENSMUSG00000036241.3, intron 1 of 4) protein_coding-intron (ENSMUSG00000036241.3, intron 1 of 4) -9788 ENSMUSG00000081437.1 ENSMUSG00000081437 ENSMUST00000120536 Gm12402 processed_pseudogene Interval_118423 chr4 131393240 131394046 + 0 NA Intergenic Intergenic -93554 ENSMUSG00000078531.3 ENSMUSG00000078531 ENSMUST00000149942 Gm831 lincRNA Interval_112668 chr4 43950886 43951174 + 0 NA Intergenic Intergenic -6662 ENSMUSG00000028480.14 ENSMUSG00000028480 ENSMUST00000107855 Glipr2 protein_coding Interval_72640 chr17 31264156 31266249 + 0 NA intron (ENSMUSG00000024033.10, intron 5 of 8) protein_coding-intron (ENSMUSG00000024033.10, intron 5 of 8) 11759 ENSMUSG00000024033.10 ENSMUSG00000024033 ENSMUST00000235144 Rsph1 protein_coding Interval_171905 chr9 122338050 122338261 + 0 NA Intergenic Intergenic -13634 ENSMUSG00000032540.16 ENSMUSG00000032540 ENSMUST00000154161 Abhd5 protein_coding Interval_162583 chr9 5131712 5132928 + 0 NA Intergenic Intergenic 20921 ENSMUSG00000084690.1 ENSMUSG00000084690 ENSMUST00000122741 Gm24896 snoRNA Interval_150208 chr7 108057323 108057696 + 0 NA TTS (ENSMUSG00000043855.7) protein_coding-TTS (ENSMUSG00000043855.7) 6816 ENSMUSG00000043855.7 ENSMUSG00000043855 ENSMUST00000063151 Olfr479 protein_coding Interval_125897 chr5 75513062 75513331 + 0 NA Intergenic Intergenic 47954 ENSMUSG00000089078.1 ENSMUSG00000089078 ENSMUST00000158453 Gm24502 snRNA Interval_45098 chr13 52140297 52140730 + 0 NA Intergenic Intergenic -39898 ENSMUSG00000113399.1 ENSMUSG00000113399 ENSMUST00000222876 Gm48199 lincRNA Interval_152751 chr7 137193880 137194320 + 0 NA TTS (ENSMUSG00000010476.14) protein_coding-TTS (ENSMUSG00000010476.14) -4388 ENSMUSG00000109847.1 ENSMUSG00000109847 ENSMUST00000209650 Gm45278 antisense Interval_61207 chr15 79958975 79961006 + 0 NA intron (ENSMUSG00000053411.16, intron 1 of 5) protein_coding-intron (ENSMUSG00000053411.16, intron 1 of 5) -26160 ENSMUSG00000053411.16 ENSMUSG00000053411 ENSMUST00000177061 Cbx7 protein_coding Interval_24049 chr11 29787020 29787521 + 0 NA intron (ENSMUSG00000044072.14, intron 24 of 41) protein_coding-intron (ENSMUSG00000044072.14, intron 24 of 41) 15829 ENSMUSG00000044072.14 ENSMUSG00000044072 ENSMUST00000109452 Eml6 protein_coding Interval_110249 chr3 154832210 154832465 + 0 NA intron (ENSMUSG00000040086.13, intron 22 of 24) protein_coding-intron (ENSMUSG00000040086.13, intron 22 of 24) -7270 ENSMUSG00000118443.1 ENSMUSG00000118443 ENSMUST00000238360 Gm18589 unitary_pseudogene Interval_163569 chr9 22259157 22260244 + 0 NA promoter-TSS (ENSMUSG00000111205.1) bidirectional_promoter_lncRNA-promoter-TSS (ENSMUSG00000111205.1) 195 ENSMUSG00000062794.8 ENSMUSG00000062794 ENSMUST00000086281 Zfp599 protein_coding Interval_78423 chr18 12724827 12726735 + 0 NA TTS (ENSMUSG00000024424.15) protein_coding-TTS (ENSMUSG00000024424.15) 10970 ENSMUSG00000087950.1 ENSMUSG00000087950 ENSMUST00000157325 Mir1948 miRNA Interval_162567 chr9 4466881 4467322 + 0 NA intron (ENSMUSG00000025892.16, intron 10 of 15) protein_coding-intron (ENSMUSG00000025892.16, intron 11 of 16) -11078 ENSMUSG00000092896.2 ENSMUSG00000092896 ENSMUST00000175155 Gm23811 miRNA Interval_136518 chr6 55108297 55108953 + 0 NA intron (ENSMUSG00000003476.16, intron 2 of 11) protein_coding-intron (ENSMUSG00000003476.16, intron 3 of 12) 9288 ENSMUSG00000003476.16 ENSMUSG00000003476 ENSMUST00000169777 Crhr2 protein_coding Interval_87113 chr19 46198692 46198991 + 0 NA intron (ENSMUSG00000025224.16, intron 3 of 18) protein_coding-intron (ENSMUSG00000025224.16, intron 3 of 39) 7017 ENSMUSG00000093525.1 ENSMUSG00000093525 ENSMUST00000175770 Gm8974 processed_pseudogene Interval_103232 chr3 37247689 37247901 + 0 NA Intergenic Intergenic 9098 ENSMUSG00000094007.1 ENSMUSG00000094007 ENSMUST00000180244 Gm24169 miRNA Interval_121065 chr4 152542356 152542721 + 0 NA intron (ENSMUSG00000039577.17, intron 15 of 28) protein_coding-intron (ENSMUSG00000039577.17, intron 15 of 28) 64360 ENSMUSG00000039577.17 ENSMUSG00000039577 ENSMUST00000123635 Nphp4 protein_coding Interval_113839 chr4 59252837 59253318 + 0 NA Intergenic Intergenic -6974 ENSMUSG00000086952.1 ENSMUSG00000086952 ENSMUST00000124589 Gm12596 lincRNA Interval_110554 chr4 3833245 3836130 + 0 NA TTS (ENSMUSG00000088351.1) snoRNA-TTS (ENSMUSG00000088351.1) 459 ENSMUSG00000088351.1 ENSMUSG00000088351 ENSMUST00000157726 Gm24016 snoRNA Interval_101777 chr3 9523234 9523508 + 0 NA intron (ENSMUSG00000040209.12, intron 1 of 9) protein_coding-intron (ENSMUSG00000040209.12, intron 2 of 8) 27203 ENSMUSG00000103485.1 ENSMUSG00000103485 ENSMUST00000192900 Gm38001 TEC Interval_9820 chr1 162668931 162669845 + 0 NA Intergenic Intergenic 4832 ENSMUSG00000098259.1 ENSMUSG00000098259 ENSMUST00000184547 Gm27616 miRNA Interval_107692 chr3 111139660 111139877 + 0 NA Intergenic Intergenic 31268 ENSMUSG00000106487.1 ENSMUSG00000106487 ENSMUST00000199816 Gm43407 processed_pseudogene Interval_79925 chr18 35964616 35965921 + 0 NA intron (ENSMUSG00000024347.16, intron 1 of 14) protein_coding-intron (ENSMUSG00000024347.16, intron 1 of 14) 201 ENSMUSG00000024347.16 ENSMUSG00000024347 ENSMUST00000175720 Psd2 protein_coding Interval_164337 chr9 35454723 35454992 + 0 NA intron (ENSMUSG00000038119.15, intron 5 of 10) protein_coding-intron (ENSMUSG00000038119.15, intron 3 of 18) -20028 ENSMUSG00000065934.1 ENSMUSG00000065934 ENSMUST00000084000 Gm25630 snRNA Interval_120279 chr4 145146751 145147771 + 0 NA intron (ENSMUSG00000020220.16, intron 3 of 51) protein_coding-intron (ENSMUSG00000020220.16, intron 20 of 67) 8225 ENSMUSG00000020220.16 ENSMUSG00000020220 ENSMUST00000132700 Vps13d protein_coding Interval_145970 chr7 42749823 42751134 + 0 NA promoter-TSS (ENSMUSG00000092238.1) processed_pseudogene-promoter-TSS (ENSMUSG00000092238.1) 64 ENSMUSG00000092238.1 ENSMUSG00000092238 ENSMUST00000173237 Gm6004 processed_pseudogene Interval_67102 chr16 42991394 42991722 + 0 NA intron (ENSMUSG00000022708.16, intron 2 of 7) protein_coding-intron (ENSMUSG00000022708.16, intron 1 of 14) 35927 ENSMUSG00000081824.5 ENSMUSG00000081824 ENSMUST00000121906 Ndufs5-ps processed_pseudogene Interval_89674 chr2 24460530 24461576 + 0 NA exon (ENSMUSG00000085057.7, exon 3 of 4) processed_transcript-exon (ENSMUSG00000085057.7, exon 3 of 4) 14511 ENSMUSG00000026976.15 ENSMUSG00000026976 ENSMUST00000152614 Pax8 protein_coding Interval_19203 chr10 95477674 95477960 + 0 NA exon (ENSMUSG00000112450.1, exon 1 of 1) processed_pseudogene-exon (ENSMUSG00000112450.1, exon 1 of 1) 300 ENSMUSG00000112450.1 ENSMUSG00000112450 ENSMUST00000219947 Gm3619 processed_pseudogene Interval_13067 chr10 11036845 11037756 + 0 NA intron (ENSMUSG00000019828.13, intron 2 of 9) protein_coding-intron (ENSMUSG00000019828.13, intron 2 of 8) 1384 ENSMUSG00000111921.1 ENSMUSG00000111921 ENSMUST00000218933 Gm48406 processed_pseudogene Interval_20169 chr10 115374387 115374945 + 0 NA intron (ENSMUSG00000020137.5, intron 1 of 1) protein_coding-intron (ENSMUSG00000020137.5, intron 1 of 1) 9777 ENSMUSG00000020137.5 ENSMUSG00000020137 ENSMUST00000218989 Thap2 protein_coding Interval_165597 chr9 50106162 50107377 + 0 NA Intergenic Intergenic 80276 ENSMUSG00000098012.1 ENSMUSG00000098012 ENSMUST00000182240 Gm8907 processed_pseudogene Interval_119638 chr4 138889231 138890359 + 0 NA Intergenic Intergenic 10435 ENSMUSG00000028751.13 ENSMUSG00000028751 ENSMUST00000105804 Pla2g2e protein_coding Interval_152271 chr7 131265937 131267134 + 0 NA intron (ENSMUSG00000006204.7, intron 36 of 70) protein_coding-intron (ENSMUSG00000030849.18, intron 2 of 6) 55757 ENSMUSG00000040205.8 ENSMUSG00000040205 ENSMUST00000046611 Cuzd1 protein_coding Interval_131966 chr5 141393284 141394652 + 0 NA intron (ENSMUSG00000039683.16, intron 1 of 9) protein_coding-intron (ENSMUSG00000039683.16, intron 1 of 44) -13042 ENSMUSG00000084934.1 ENSMUSG00000084934 ENSMUST00000153879 Gm16035 antisense Interval_127710 chr5 106963748 106964990 + 0 NA promoter-TSS (ENSMUSG00000029283.17) protein_coding-promoter-TSS (ENSMUSG00000029283.17) -10177 ENSMUSG00000029283.17 ENSMUSG00000029283 ENSMUST00000123546 Cdc7 protein_coding Interval_52038 chr14 34755751 34756445 + 0 NA Intergenic Intergenic -4129 ENSMUSG00000097310.2 ENSMUSG00000097310 ENSMUST00000181044 A930038B10Rik lincRNA Interval_1334 chr1 20766825 20767024 + 0 NA Intergenic Intergenic 12630 ENSMUSG00000041872.9 ENSMUSG00000041872 ENSMUST00000190692 Il17f protein_coding Interval_32977 chr11 113477560 113478037 + 0 NA intron (ENSMUSG00000041654.15, intron 4 of 4) protein_coding-intron (ENSMUSG00000041654.15, intron 5 of 10) 9821 ENSMUSG00000078251.2 ENSMUSG00000078251 ENSMUST00000105048 Gm16487 pseudogene Interval_143090 chr6 149215317 149215509 + 0 NA promoter-TSS (ENSMUSG00000107526.1) lincRNA-promoter-TSS (ENSMUSG00000107526.1) -228 ENSMUSG00000107526.1 ENSMUSG00000107526 ENSMUST00000205198 1700003I16Rik lincRNA Interval_125617 chr5 72759187 72759976 + 0 NA intron (ENSMUSG00000029217.16, intron 11 of 13) protein_coding-intron (ENSMUSG00000029217.16, intron 16 of 18) -23675 ENSMUSG00000054892.14 ENSMUSG00000054892 ENSMUST00000197923 Txk protein_coding Interval_139101 chr6 95117247 95118615 + 0 NA promoter-TSS (ENSMUSG00000030031.14) protein_coding-promoter-TSS (ENSMUSG00000030031.14) -53 ENSMUSG00000030031.14 ENSMUSG00000030031 ENSMUST00000145387 Kbtbd8 protein_coding Interval_104105 chr3 58617401 58618262 + 0 NA intron (ENSMUSG00000070471.3, intron 13 of 13) protein_coding-intron (ENSMUSG00000070471.3, intron 13 of 13) 19376 ENSMUSG00000070471.3 ENSMUSG00000070471 ENSMUST00000041115 Erich6 protein_coding Interval_120590 chr4 149548969 149550027 + 0 NA intron (ENSMUSG00000028988.13, intron 3 of 3) protein_coding-intron (ENSMUSG00000028988.13, intron 4 of 4) 4381 ENSMUSG00000028988.13 ENSMUSG00000028988 ENSMUST00000105692 Ctnnbip1 protein_coding Interval_172520 chrX 23774197 23774528 + 0 NA intron (ENSMUSG00000036769.14, intron 10 of 20) protein_coding-intron (ENSMUSG00000036769.14, intron 9 of 19) 81203 ENSMUSG00000036769.14 ENSMUSG00000036769 ENSMUST00000135445 Wdr44 protein_coding Interval_71379 chr17 22826216 22826868 + 0 NA Intergenic Intergenic -18806 ENSMUSG00000117333.1 ENSMUSG00000117333 ENSMUST00000233975 Gm16386 processed_pseudogene Interval_73205 chr17 35567744 35570231 + 0 NA TTS (ENSMUSG00000039269.5) protein_coding-TTS (ENSMUSG00000039269.5) 1502 ENSMUSG00000039269.5 ENSMUSG00000039269 ENSMUST00000174246 2300002M23Rik protein_coding Interval_100230 chr2 167799063 167800319 + 0 NA Intergenic Intergenic 17638 ENSMUSG00000087624.1 ENSMUSG00000087624 ENSMUST00000124850 9230111E07Rik lincRNA Interval_92811 chr2 65795861 65796093 + 0 NA Intergenic Intergenic -33780 ENSMUSG00000118566.1 ENSMUSG00000118566 ENSMUST00000238931 BX284648.1 unprocessed_pseudogene Interval_68508 chr16 78287860 78288283 + 0 NA intron (ENSMUSG00000109841.2, intron 1 of 2) processed_transcript-intron (ENSMUSG00000109841.2, intron 1 of 2) 6916 ENSMUSG00000109841.2 ENSMUSG00000109841 ENSMUST00000210555 E330011O21Rik processed_transcript Interval_50495 chr14 14061818 14063728 + 0 NA intron (ENSMUSG00000021738.5, intron 5 of 12) protein_coding-intron (ENSMUSG00000021738.5, intron 4 of 11) 49629 ENSMUSG00000021738.5 ENSMUSG00000021738 ENSMUST00000224315 Atxn7 protein_coding Interval_150858 chr7 115865721 115866798 + 0 NA intron (ENSMUSG00000051910.13, intron 2 of 11) protein_coding-intron (ENSMUSG00000051910.13, intron 2 of 16) -20108 ENSMUSG00000051910.13 ENSMUSG00000051910 ENSMUST00000206912 Sox6 protein_coding Interval_69946 chr17 3414367 3415709 + 0 NA exon (ENSMUSG00000023800.15, exon 3 of 27) protein_coding-exon (ENSMUSG00000023800.15, exon 3 of 27) 47294 ENSMUSG00000115039.1 ENSMUSG00000115039 ENSMUST00000228135 Gm7043 processed_pseudogene Interval_86935 chr19 45002265 45004818 + 0 NA TTS (ENSMUSG00000025207.16) protein_coding-TTS (ENSMUSG00000025207.16) -2122 ENSMUSG00000025209.5 ENSMUSG00000025209 ENSMUST00000026227 Twnk protein_coding Interval_157800 chr8 73335744 73337965 + 0 NA intron (ENSMUSG00000004383.18, intron 1 of 14) protein_coding-intron (ENSMUSG00000004383.18, intron 1 of 14) 16686 ENSMUSG00000004383.18 ENSMUSG00000004383 ENSMUST00000146249 Large1 protein_coding Interval_93137 chr2 70538205 70539213 + 0 NA intron (ENSMUSG00000075302.10, intron 10 of 11) protein_coding-intron (ENSMUSG00000075302.10, intron 11 of 12) -14942 ENSMUSG00000104076.1 ENSMUSG00000104076 ENSMUST00000191917 Gm37026 TEC Interval_164095 chr9 31444363 31444746 + 0 NA intron (ENSMUSG00000041737.8, intron 1 of 5) protein_coding-intron (ENSMUSG00000041737.8, intron 1 of 5) -4787 ENSMUSG00000111468.1 ENSMUSG00000111468 ENSMUST00000213948 5033425B01Rik TEC Interval_72418 chr17 29704583 29705474 + 0 NA exon (ENSMUSG00000024019.18, exon 24 of 24) protein_coding-exon (ENSMUSG00000024019.18, exon 24 of 24) 11980 ENSMUSG00000024018.18 ENSMUSG00000024018 ENSMUST00000174437 Ccdc167 protein_coding Interval_132549 chr5 146227644 146227991 + 0 NA Intergenic Intergenic -6916 ENSMUSG00000029634.15 ENSMUSG00000029634 ENSMUST00000161725 Rnf6 protein_coding Interval_12805 chr10 5724553 5724801 + 0 NA Intergenic Intergenic -11142 ENSMUSG00000110983.1 ENSMUSG00000110983 ENSMUST00000213369 Gm47679 processed_pseudogene Interval_147667 chr7 71411344 71412467 + 0 NA Intergenic Intergenic 60454 ENSMUSG00000099558.1 ENSMUSG00000099558 ENSMUST00000190004 Gm29295 lincRNA Interval_126145 chr5 79145101 79145319 + 0 NA Intergenic Intergenic -294987 ENSMUSG00000107308.1 ENSMUSG00000107308 ENSMUST00000200713 Gm43234 processed_pseudogene Interval_142323 chr6 140638997 140639195 + 0 NA TTS (ENSMUSG00000030232.18) protein_coding-TTS (ENSMUSG00000030232.18) 2358 ENSMUSG00000030232.18 ENSMUSG00000030232 ENSMUST00000160772 Aebp2 protein_coding Interval_162561 chr9 4347792 4348380 + 0 NA Intergenic Intergenic 23249 ENSMUSG00000094086.1 ENSMUSG00000094086 ENSMUST00000174981 Gm23992 miRNA Interval_147389 chr7 66369306 66369855 + 0 NA TTS (ENSMUSG00000087834.1) rRNA-TTS (ENSMUSG00000087834.1) 901 ENSMUSG00000087834.1 ENSMUSG00000087834 ENSMUST00000157209 Gm23957 rRNA Interval_15971 chr10 59766854 59767303 + 0 NA intron (ENSMUSG00000020111.15, intron 1 of 3) protein_coding-intron (ENSMUSG00000020111.15, intron 6 of 13) 33176 ENSMUSG00000091184.1 ENSMUSG00000091184 ENSMUST00000168284 Gm17059 antisense Interval_49119 chr13 108214049 108215189 + 0 NA intron (ENSMUSG00000021696.9, intron 1 of 7) protein_coding-intron (ENSMUSG00000021696.9, intron 1 of 7) 209 ENSMUSG00000021696.9 ENSMUSG00000021696 ENSMUST00000225550 Elovl7 protein_coding Interval_2782 chr1 44889927 44890255 + 0 NA Intergenic Intergenic -15939 ENSMUSG00000100013.1 ENSMUSG00000100013 ENSMUST00000185547 Gm19480 processed_pseudogene Interval_83470 chr18 86393846 86396537 + 0 NA promoter-TSS (ENSMUSG00000050321.3) protein_coding-promoter-TSS (ENSMUSG00000050321.3) -630 ENSMUSG00000050321.3 ENSMUSG00000050321 ENSMUST00000235167 Neto1 protein_coding Interval_45043 chr13 51696112 51696728 + 0 NA intron (ENSMUSG00000021451.16, intron 2 of 4) protein_coding-intron (ENSMUSG00000021451.16, intron 2 of 4) 44623 ENSMUSG00000035139.14 ENSMUSG00000035139 ENSMUST00000153877 Secisbp2 protein_coding Interval_143269 chr7 4876038 4877502 + 0 NA promoter-TSS (ENSMUSG00000086784.2) protein_coding-promoter-TSS (ENSMUSG00000086784.2) -383 ENSMUSG00000086784.2 ENSMUSG00000086784 ENSMUST00000125249 Isoc2a protein_coding Interval_624 chr1 9057937 9059252 + 0 NA intron (ENSMUSG00000025909.16, intron 2 of 20) protein_coding-intron (ENSMUSG00000025909.16, intron 3 of 4) -94973 ENSMUSG00000066693.2 ENSMUSG00000066693 ENSMUST00000085919 Gm7493 processed_pseudogene Interval_148034 chr7 78583940 78587045 + 0 NA exon (ENSMUSG00000059146.12, exon 2 of 3) protein_coding-exon (ENSMUSG00000059146.12, exon 2 of 3) 6662 ENSMUSG00000052629.5 ENSMUSG00000052629 ENSMUST00000186234 Gm9885 antisense Interval_165083 chr9 44467900 44469179 + 0 NA promoter-TSS (ENSMUSG00000060380.3) lincRNA-promoter-TSS (ENSMUSG00000060380.3) 62 ENSMUSG00000060380.3 ENSMUSG00000060380 ENSMUST00000136322 C030014I23Rik lincRNA Interval_22100 chr11 6339431 6339692 + 0 NA intron (ENSMUSG00000020456.17, intron 7 of 22) protein_coding-intron (ENSMUSG00000020456.17, intron 7 of 22) 47576 ENSMUSG00000020456.17 ENSMUSG00000020456 ENSMUST00000081894 Ogdh protein_coding Interval_160920 chr8 115045424 115045695 + 0 NA intron (ENSMUSG00000004637.15, intron 8 of 8) protein_coding-intron (ENSMUSG00000004637.15, intron 8 of 8) 7354 ENSMUSG00000088428.1 ENSMUSG00000088428 ENSMUST00000157803 Gm22556 rRNA Interval_85435 chr19 26160763 26161123 + 0 NA Intergenic Intergenic 88987 ENSMUSG00000117950.1 ENSMUSG00000117950 ENSMUST00000237746 Gm50376 lincRNA Interval_48734 chr13 102599648 102600690 + 0 NA Intergenic Intergenic -4364 ENSMUSG00000114730.1 ENSMUSG00000114730 ENSMUST00000225869 Gm47014 processed_pseudogene Interval_127626 chr5 105881008 105881775 + 0 NA exon (ENSMUSG00000105341.1, exon 1 of 1) TEC-exon (ENSMUSG00000105341.1, exon 1 of 1) 1808 ENSMUSG00000105341.1 ENSMUSG00000105341 ENSMUST00000196459 Gm43817 TEC Interval_68144 chr16 65648910 65649591 + 0 NA Intergenic Intergenic -35831 ENSMUSG00000116578.1 ENSMUSG00000116578 ENSMUST00000232570 Gm49633 processed_pseudogene Interval_157884 chr8 75212747 75214019 + 0 NA promoter-TSS (ENSMUSG00000034472.13) protein_coding-promoter-TSS (ENSMUSG00000034472.13) -561 ENSMUSG00000034472.13 ENSMUSG00000034472 ENSMUST00000132133 Rasd2 protein_coding Interval_164711 chr9 40751876 40752287 + 0 NA intron (ENSMUSG00000111189.1, intron 2 of 2) protein_coding-intron (ENSMUSG00000032024.10, intron 1 of 6) 10174 ENSMUSG00000111189.1 ENSMUSG00000111189 ENSMUST00000216792 Gm48293 antisense Interval_89833 chr2 25850390 25851162 + 0 NA Intergenic Intergenic -3528 ENSMUSG00000059625.6 ENSMUSG00000059625 ENSMUST00000076989 Sohlh1 protein_coding Interval_75302 chr17 65777145 65777897 + 0 NA Intergenic Intergenic -4881 ENSMUSG00000056515.9 ENSMUSG00000056515 ENSMUST00000233258 Rab31 protein_coding Interval_3982 chr1 65407774 65408393 + 0 NA Intergenic Intergenic 13038 ENSMUSG00000100503.1 ENSMUSG00000100503 ENSMUST00000191528 Gm28927 unprocessed_pseudogene Interval_108872 chr3 132877240 132878810 + 0 NA exon (ENSMUSG00000106230.1, exon 1 of 4) lincRNA-exon (ENSMUSG00000106230.1, exon 1 of 4) 571 ENSMUSG00000106230.1 ENSMUSG00000106230 ENSMUST00000197386 Gm29811 lincRNA Interval_149042 chr7 92636349 92637609 + 0 NA promoter-TSS (ENSMUSG00000041343.19) protein_coding-promoter-TSS (ENSMUSG00000041343.19) -229 ENSMUSG00000103887.1 ENSMUSG00000103887 ENSMUST00000195712 Gm37008 TEC Interval_136074 chr6 50519122 50519420 + 0 NA Intergenic Intergenic 20763 ENSMUSG00000077357.1 ENSMUSG00000077357 ENSMUST00000104169 Gm26289 snoRNA Interval_161652 chr8 121807848 121809158 + 0 NA intron (ENSMUSG00000040263.16, intron 5 of 10) protein_coding-intron (ENSMUSG00000040263.16, intron 5 of 11) 2088 ENSMUSG00000092418.1 ENSMUSG00000092418 ENSMUST00000173993 Gm20406 antisense Interval_126191 chr5 81878893 81879094 + 0 NA Intergenic Intergenic 52177 ENSMUSG00000106746.1 ENSMUSG00000106746 ENSMUST00000202166 2900064F13Rik TEC Interval_123882 chr5 36262581 36262919 + 0 NA intron (ENSMUSG00000029093.14, intron 1 of 7) protein_coding-intron (ENSMUSG00000029093.14, intron 1 of 26) -38820 ENSMUSG00000098884.1 ENSMUSG00000098884 ENSMUST00000184943 Mir7689 miRNA Interval_86380 chr19 39711327 39711732 + 0 NA intron (ENSMUSG00000074882.3, intron 6 of 8) protein_coding-intron (ENSMUSG00000074882.3, intron 6 of 8) 29525 ENSMUSG00000074882.3 ENSMUSG00000074882 ENSMUST00000099472 Cyp2c68 protein_coding Interval_51553 chr14 30096917 30097585 + 0 NA intron (ENSMUSG00000015968.18, intron 3 of 6) protein_coding-intron (ENSMUSG00000015968.18, intron 28 of 48) 2489 ENSMUSG00000118437.1 ENSMUSG00000118437 ENSMUST00000238444 Gm50467 antisense Interval_21539 chr10 129420227 129420632 + 0 NA Intergenic Intergenic -6877 ENSMUSG00000095696.3 ENSMUSG00000095696 ENSMUST00000076508 Olfr786 protein_coding Interval_142683 chr6 144993592 144994298 + 0 NA exon (ENSMUSG00000030268.17, exon 11 of 11) protein_coding-exon (ENSMUSG00000030268.17, exon 11 of 11) 44243 ENSMUSG00000088867.1 ENSMUSG00000088867 ENSMUST00000158242 Gm23071 rRNA Interval_3377 chr1 57607005 57608870 + 0 NA Intergenic Intergenic -43886 ENSMUSG00000101151.1 ENSMUSG00000101151 ENSMUST00000186851 Gm17929 processed_pseudogene Interval_50789 chr14 19858095 19859029 + 0 NA Intergenic Intergenic -8418 ENSMUSG00000114436.1 ENSMUSG00000114436 ENSMUST00000224546 Gm48283 lincRNA Interval_55404 chr14 86781335 86781695 + 0 NA intron (ENSMUSG00000022021.14, intron 25 of 26) protein_coding-intron (ENSMUSG00000022021.14, intron 25 of 27) -74330 ENSMUSG00000115306.1 ENSMUSG00000115306 ENSMUST00000226731 Gm49159 TEC Interval_41697 chr12 117834808 117835100 + 0 NA promoter-TSS (ENSMUSG00000093544.1) processed_pseudogene-promoter-TSS (ENSMUSG00000093544.1) -603 ENSMUSG00000093544.1 ENSMUSG00000093544 ENSMUST00000175828 Gm20613 processed_pseudogene Interval_150257 chr7 109056255 109057125 + 0 NA TTS (ENSMUSG00000048330.14) protein_coding-TTS (ENSMUSG00000048330.14) 1134 ENSMUSG00000048330.14 ENSMUSG00000048330 ENSMUST00000129629 Ric3 protein_coding Interval_90776 chr2 32558726 32558915 + 0 NA TTS (ENSMUSG00000039157.12) protein_coding-TTS (ENSMUSG00000039157.12) -13227 ENSMUSG00000026810.12 ENSMUSG00000026810 ENSMUST00000150419 Dpm2 protein_coding Interval_158050 chr8 78306954 78307847 + 0 NA intron (ENSMUSG00000037101.16, intron 6 of 10) protein_coding-intron (ENSMUSG00000037101.16, intron 9 of 13) 94050 ENSMUSG00000037101.16 ENSMUSG00000037101 ENSMUST00000124713 Ttc29 protein_coding Interval_4191 chr1 71523207 71523507 + 0 NA Intergenic Intergenic -29543 ENSMUSG00000101617.1 ENSMUSG00000101617 ENSMUST00000186254 Gm6947 processed_pseudogene Interval_102955 chr3 33580177 33581217 + 0 NA Intergenic Intergenic -40911 ENSMUSG00000103423.1 ENSMUSG00000103423 ENSMUST00000195812 Gm5845 processed_pseudogene Interval_160381 chr8 108851888 108852824 + 0 NA intron (ENSMUSG00000038872.10, intron 9 of 15) protein_coding-intron (ENSMUSG00000038872.10, intron 3 of 9) -15206 ENSMUSG00000102989.1 ENSMUSG00000102989 ENSMUST00000195769 Gm38318 TEC Interval_94779 chr2 94252328 94252950 + 0 NA intron (ENSMUSG00000075020.6, intron 1 of 1) lincRNA-intron (ENSMUSG00000075020.6, intron 1 of 1) 8760 ENSMUSG00000076335.1 ENSMUSG00000076335 ENSMUST00000102380 Mir670 miRNA Interval_28868 chr11 78877843 78878570 + 0 NA Intergenic Intergenic -46970 ENSMUSG00000020826.9 ENSMUSG00000020826 ENSMUST00000214397 Nos2 protein_coding Interval_140933 chr6 122825640 122826880 + 0 NA promoter-TSS (ENSMUSG00000003154.15) protein_coding-promoter-TSS (ENSMUSG00000003154.15) -415 ENSMUSG00000003154.15 ENSMUSG00000003154 ENSMUST00000203075 Foxj2 protein_coding Interval_63526 chr15 101771879 101773167 + 0 NA Intergenic Intergenic 6170 ENSMUSG00000056605.7 ENSMUSG00000056605 ENSMUST00000127671 Krt72 protein_coding Interval_15137 chr10 42839911 42840216 + 0 NA Intergenic Intergenic -19296 ENSMUSG00000087719.1 ENSMUSG00000087719 ENSMUST00000157094 Gm26464 ribozyme Interval_131582 chr5 138279705 138280889 + 0 NA promoter-TSS (ENSMUSG00000029510.15) protein_coding-promoter-TSS (ENSMUSG00000029510.15) -247 ENSMUSG00000036928.14 ENSMUSG00000036928 ENSMUST00000159189 Stag3 protein_coding Interval_67549 chr16 50684995 50685329 + 0 NA Intergenic Intergenic -18816 ENSMUSG00000083692.1 ENSMUSG00000083692 ENSMUST00000122140 Gm9575 processed_pseudogene Interval_8057 chr1 135484228 135486448 + 0 NA intron (ENSMUSG00000009418.16, intron 6 of 30) protein_coding-intron (ENSMUSG00000009418.16, intron 3 of 29) -3924 ENSMUSG00000102474.1 ENSMUSG00000102474 ENSMUST00000193434 2610012C04Rik TEC Interval_146070 chr7 43653906 43654529 + 0 NA intron (ENSMUSG00000030474.9, intron 4 of 4) protein_coding-intron (ENSMUSG00000030474.9, intron 6 of 6) 5136 ENSMUSG00000030474.9 ENSMUSG00000030474 ENSMUST00000206421 Siglece protein_coding Interval_165245 chr9 45752720 45753164 + 0 NA exon (ENSMUSG00000032087.11, exon 33 of 33) protein_coding-exon (ENSMUSG00000032087.11, exon 33 of 33) 41324 ENSMUSG00000043987.18 ENSMUSG00000043987 ENSMUST00000214868 Cep164 protein_coding Interval_66762 chr16 37271034 37271448 + 0 NA intron (ENSMUSG00000022829.14, intron 7 of 27) protein_coding-intron (ENSMUSG00000022829.14, intron 7 of 22) -57477 ENSMUSG00000083420.1 ENSMUSG00000083420 ENSMUST00000119116 Gm15665 processed_pseudogene Interval_172802 chrX 49797196 49798030 + 0 NA intron (ENSMUSG00000031111.16, intron 1 of 2) protein_coding-intron (ENSMUSG00000031111.16, intron 1 of 19) 122 ENSMUSG00000031111.16 ENSMUSG00000031111 ENSMUST00000135492 Igsf1 protein_coding Interval_60783 chr15 76721898 76725347 + 0 NA promoter-TSS (ENSMUSG00000116138.1) protein_coding-promoter-TSS (ENSMUSG00000116138.1) 223 ENSMUSG00000116138.1 ENSMUSG00000116138 ENSMUST00000229507 C030006K11Rik protein_coding Interval_151008 chr7 117612936 117614116 + 0 NA intron (ENSMUSG00000030657.11, intron 5 of 6) protein_coding-intron (ENSMUSG00000030657.11, intron 5 of 11) 138034 ENSMUSG00000030657.11 ENSMUSG00000030657 ENSMUST00000161889 Xylt1 protein_coding Interval_154327 chr8 14561323 14561526 + 0 NA intron (ENSMUSG00000047495.15, intron 3 of 14) protein_coding-intron (ENSMUSG00000047495.15, intron 3 of 14) 186003 ENSMUSG00000084945.1 ENSMUSG00000084945 ENSMUST00000155211 C030037F17Rik antisense Interval_35378 chr12 21167349 21168406 + 0 NA intron (ENSMUSG00000052632.16, intron 1 of 27) protein_coding-intron (ENSMUSG00000052632.16, intron 1 of 26) 79446 ENSMUSG00000118655.1 ENSMUSG00000118655 ENSMUST00000172962 AC156032.1 processed_transcript Interval_62736 chr15 96542813 96543913 + 0 NA Intergenic Intergenic 45461 ENSMUSG00000116160.1 ENSMUSG00000116160 ENSMUST00000229356 Gm41392 lincRNA Interval_102372 chr3 22335841 22336101 + 0 NA Intergenic Intergenic 13641 ENSMUSG00000102866.1 ENSMUSG00000102866 ENSMUST00000193583 Gm37636 processed_pseudogene Interval_75586 chr17 68932859 68933055 + 0 NA Intergenic Intergenic 88932 ENSMUSG00000117093.1 ENSMUSG00000117093 ENSMUST00000232893 Gm49949 TEC Interval_134765 chr6 31310655 31311041 + 0 NA intron (ENSMUSG00000087380.7, intron 2 of 3) processed_transcript-intron (ENSMUSG00000087380.7, intron 3 of 6) 18314 ENSMUSG00000087380.7 ENSMUSG00000087380 ENSMUST00000124811 2210408F21Rik processed_transcript Interval_167429 chr9 69150799 69151671 + 0 NA intron (ENSMUSG00000032238.17, intron 1 of 5) protein_coding-intron (ENSMUSG00000032238.17, intron 1 of 10) 213012 ENSMUSG00000086648.1 ENSMUSG00000086648 ENSMUST00000152570 Gm15511 antisense Interval_106543 chr3 97124211 97125632 + 0 NA TTS (ENSMUSG00000106324.1) processed_pseudogene-TTS (ENSMUSG00000106324.1) 1192 ENSMUSG00000106324.1 ENSMUSG00000106324 ENSMUST00000199013 Gm43222 processed_pseudogene Interval_165064 chr9 44256255 44256981 + 0 NA exon (ENSMUSG00000032109.15, exon 7 of 10) protein_coding-exon (ENSMUSG00000032109.15, exon 7 of 10) 1571 ENSMUSG00000111685.1 ENSMUSG00000111685 ENSMUST00000215389 Gm10686 TEC Interval_119664 chr4 139082831 139083446 + 0 NA TTS (ENSMUSG00000041120.6) protein_coding-TTS (ENSMUSG00000041120.6) 7314 ENSMUSG00000110296.1 ENSMUSG00000110296 ENSMUST00000210295 Gm45533 antisense Interval_35302 chr12 20016469 20016979 + 0 NA Intergenic Intergenic 13947 ENSMUSG00000113287.1 ENSMUSG00000113287 ENSMUST00000221342 Gm40853 unprocessed_pseudogene Interval_64482 chr16 11908520 11909863 + 0 NA intron (ENSMUSG00000055015.5, intron 2 of 2) lincRNA-intron (ENSMUSG00000055015.5, intron 2 of 2) 205 ENSMUSG00000065979.12 ENSMUSG00000065979 ENSMUST00000073371 Cpped1 protein_coding Interval_53497 chr14 57852736 57853906 + 0 NA intron (ENSMUSG00000021969.8, intron 7 of 13) protein_coding-intron (ENSMUSG00000021969.8, intron 7 of 12) -22112 ENSMUSG00000065374.1 ENSMUSG00000065374 ENSMUST00000083440 Gm22738 snRNA Interval_82276 chr18 69877309 69878177 + 0 NA Intergenic Intergenic 32981 ENSMUSG00000118028.1 ENSMUSG00000118028 ENSMUST00000235804 Gm50215 lincRNA Interval_26971 chr11 61974127 61974754 + 0 NA promoter-TSS (ENSMUSG00000083212.3) processed_pseudogene-promoter-TSS (ENSMUSG00000083212.3) -90 ENSMUSG00000083212.3 ENSMUSG00000083212 ENSMUST00000120062 Gm12274 processed_pseudogene Interval_10138 chr1 166033677 166034102 + 0 NA intron (ENSMUSG00000097196.2, intron 1 of 1) lincRNA-intron (ENSMUSG00000097196.2, intron 1 of 1) 9802 ENSMUSG00000102890.1 ENSMUSG00000102890 ENSMUST00000195801 Gm7626 processed_pseudogene Interval_156459 chr8 48418711 48419057 + 0 NA intron (ENSMUSG00000031561.16, intron 2 of 26) protein_coding-intron (ENSMUSG00000031561.16, intron 2 of 28) 136429 ENSMUSG00000031561.16 ENSMUSG00000031561 ENSMUST00000211812 Tenm3 protein_coding Interval_42269 chr13 11433574 11434479 + 0 NA Intergenic Intergenic -7128 ENSMUSG00000077618.1 ENSMUSG00000077618 ENSMUST00000104430 Gm25496 snoRNA Interval_15220 chr10 43452070 43452921 + 0 NA intron (ENSMUSG00000038240.13, intron 7 of 7) protein_coding-intron (ENSMUSG00000038240.13, intron 7 of 7) 4006 ENSMUSG00000094955.2 ENSMUSG00000094955 ENSMUST00000178135 Gm3699 processed_pseudogene Interval_44792 chr13 48668498 48669526 + 0 NA Intergenic Intergenic 6014 ENSMUSG00000021381.4 ENSMUSG00000021381 ENSMUST00000021813 Barx1 protein_coding Interval_38866 chr12 83505044 83505327 + 0 NA exon (ENSMUSG00000113664.1, exon 1 of 1) processed_pseudogene-exon (ENSMUSG00000113664.1, exon 1 of 1) 103 ENSMUSG00000113664.1 ENSMUSG00000113664 ENSMUST00000221402 Gm47184 processed_pseudogene Interval_95181 chr2 104578074 104578525 + 0 NA promoter-TSS (ENSMUSG00000077236.1) snoRNA-promoter-TSS (ENSMUSG00000077236.1) -646 ENSMUSG00000077236.1 ENSMUSG00000077236 ENSMUST00000104048 Gm22439 snoRNA Interval_10467 chr1 171150095 171151132 + 0 NA promoter-TSS (ENSMUSG00000056569.11) protein_coding-promoter-TSS (ENSMUSG00000056569.11) -25 ENSMUSG00000058076.12 ENSMUSG00000058076 ENSMUST00000155798 Sdhc protein_coding Interval_56682 chr14 121353809 121354330 + 0 NA intron (ENSMUSG00000063410.8, intron 1 of 1) protein_coding-intron (ENSMUSG00000063410.8, intron 1 of 10) 25942 ENSMUSG00000063410.8 ENSMUSG00000063410 ENSMUST00000226158 Stk24 protein_coding Interval_55793 chr14 100212731 100213526 + 0 NA promoter-TSS (ENSMUSG00000054391.12) antisense-promoter-TSS (ENSMUSG00000054391.12) -61 ENSMUSG00000054391.12 ENSMUSG00000054391 ENSMUST00000145018 4930517O19Rik antisense Interval_169385 chr9 96838517 96839445 + 0 NA TTS (ENSMUSG00000043587.15) protein_coding-TTS (ENSMUSG00000043587.15) -24647 ENSMUSG00000100922.1 ENSMUSG00000100922 ENSMUST00000186517 Gm8520 processed_pseudogene Interval_114480 chr4 80864502 80864996 + 0 NA Intergenic Intergenic 18161 ENSMUSG00000005994.14 ENSMUSG00000005994 ENSMUST00000133932 Tyrp1 protein_coding Interval_104730 chr3 69880023 69880278 + 0 NA Intergenic Intergenic -20228 ENSMUSG00000043461.13 ENSMUSG00000043461 ENSMUST00000171529 Sptssb protein_coding Interval_127590 chr5 105650976 105651722 + 0 NA Intergenic Intergenic 70909 ENSMUSG00000085771.1 ENSMUSG00000085771 ENSMUST00000150195 C230066G23Rik sense_intronic Interval_143491 chr7 10325202 10326001 + 0 NA TTS (ENSMUSG00000109949.1) processed_pseudogene-TTS (ENSMUSG00000109949.1) 887 ENSMUSG00000109949.1 ENSMUSG00000109949 ENSMUST00000211796 Gm45402 processed_pseudogene Interval_50357 chr14 12027093 12027444 + 0 NA intron (ENSMUSG00000021745.14, intron 4 of 29) protein_coding-intron (ENSMUSG00000021745.14, intron 4 of 29) -46060 ENSMUSG00000085883.2 ENSMUSG00000085883 ENSMUST00000151564 Gm3848 antisense Interval_54846 chr14 75798152 75798524 + 0 NA Intergenic Intergenic -11333 ENSMUSG00000022003.7 ENSMUSG00000022003 ENSMUST00000228379 Slc25a30 protein_coding Interval_11917 chr1 187125448 187125632 + 0 NA intron (ENSMUSG00000089730.2, intron 1 of 2) protein_coding-intron (ENSMUSG00000026611.17, intron 6 of 9) 402 ENSMUSG00000089730.2 ENSMUSG00000089730 ENSMUST00000160380 1700007P06Rik antisense Interval_110080 chr3 153112547 153113406 + 0 NA Intergenic Intergenic 69839 ENSMUSG00000105337.4 ENSMUSG00000105337 ENSMUST00000197695 1700094M23Rik lincRNA Interval_153545 chr8 3352606 3353330 + 0 NA promoter-TSS (ENSMUSG00000004568.13) protein_coding-promoter-TSS (ENSMUSG00000004568.13) -469 ENSMUSG00000004568.13 ENSMUSG00000004568 ENSMUST00000145360 Arhgef18 protein_coding Interval_17505 chr10 77294901 77295951 + 0 NA intron (ENSMUSG00000020262.15, intron 10 of 10) protein_coding-intron (ENSMUSG00000020262.15, intron 10 of 10) 32978 ENSMUSG00000020260.9 ENSMUSG00000020260 ENSMUST00000218117 Pofut2 protein_coding Interval_110896 chr4 9723232 9725220 + 0 NA Intergenic Intergenic -28419 ENSMUSG00000064698.1 ENSMUSG00000064698 ENSMUST00000082764 Gm24152 snRNA Interval_47931 chr13 94454556 94454759 + 0 NA intron (ENSMUSG00000021686.6, intron 13 of 26) protein_coding-intron (ENSMUSG00000021686.6, intron 13 of 26) -18206 ENSMUSG00000021686.6 ENSMUSG00000021686 ENSMUST00000220505 Ap3b1 protein_coding Interval_23660 chr11 24185664 24186039 + 0 NA Intergenic Intergenic -13070 ENSMUSG00000085516.1 ENSMUSG00000085516 ENSMUST00000146717 4930538E20Rik antisense Interval_172129 chrX 7811365 7811968 + 0 NA TTS (ENSMUSG00000031153.16) protein_coding-TTS (ENSMUSG00000031153.16) 4565 ENSMUSG00000080645.1 ENSMUSG00000080645 ENSMUST00000116995 Mir1198 miRNA Interval_73835 chr17 44321049 44321598 + 0 NA Intergenic Intergenic 46580 ENSMUSG00000117106.1 ENSMUSG00000117106 ENSMUST00000233110 Gm49872 lincRNA Interval_44745 chr13 48168096 48168325 + 0 NA intron (ENSMUSG00000114457.1, intron 2 of 3) antisense-intron (ENSMUSG00000097622.2, intron 1 of 2) 69041 ENSMUSG00000114457.1 ENSMUSG00000114457 ENSMUST00000225626 Gm36346 lincRNA Interval_168941 chr9 89245432 89245624 + 0 NA intron (ENSMUSG00000066442.17, intron 1 of 3) protein_coding-intron (ENSMUSG00000066442.17, intron 1 of 3) 17867 ENSMUSG00000103247.1 ENSMUSG00000103247 ENSMUST00000192418 Gm38091 TEC Interval_70814 chr17 14942696 14943955 + 0 NA promoter-TSS (ENSMUSG00000050088.9) protein_coding-promoter-TSS (ENSMUSG00000050088.9) 54 ENSMUSG00000050088.9 ENSMUSG00000050088 ENSMUST00000174163 1600012H06Rik protein_coding Interval_114009 chr4 62427730 62429375 + 0 NA promoter-TSS (ENSMUSG00000063851.12) protein_coding-promoter-TSS (ENSMUSG00000063851.12) 6700 ENSMUSG00000063851.12 ENSMUSG00000063851 ENSMUST00000079420 Rnf183 protein_coding Interval_31454 chr11 100774360 100774719 + 0 NA TTS (ENSMUSG00000089049.1) misc_RNA-TTS (ENSMUSG00000089049.1) 261 ENSMUSG00000089049.1 ENSMUSG00000089049 ENSMUST00000158424 Gm24358 misc_RNA Interval_25799 chr11 51801158 51801570 + 0 NA Intergenic Intergenic 37670 ENSMUSG00000020386.5 ENSMUSG00000020386 ENSMUST00000136363 Sar1b protein_coding Interval_127765 chr5 107534461 107535351 + 0 NA intron (ENSMUSG00000089798.10, intron 1 of 5) protein_coding-intron (ENSMUSG00000089798.10, intron 1 of 5) 195 ENSMUSG00000089798.10 ENSMUSG00000089798 ENSMUST00000162591 1700028K03Rik protein_coding Interval_2119 chr1 36556556 36558831 + 0 NA promoter-TSS (ENSMUSG00000087589.3) processed_transcript-promoter-TSS (ENSMUSG00000087589.3) -8 ENSMUSG00000087589.3 ENSMUSG00000087589 ENSMUST00000149224 D430040D24Rik processed_transcript Interval_58803 chr15 38152989 38154734 + 0 NA Intergenic Intergenic 48356 ENSMUSG00000115680.1 ENSMUSG00000115680 ENSMUST00000227576 Gm35167 lincRNA Interval_67289 chr16 45534137 45534312 + 0 NA exon (ENSMUSG00000089630.1, exon 1 of 1) processed_pseudogene-exon (ENSMUSG00000089630.1, exon 1 of 1) 265 ENSMUSG00000089630.1 ENSMUSG00000089630 ENSMUST00000160509 Gm6903 processed_pseudogene Interval_81471 chr18 60969126 60970168 + 0 NA intron (ENSMUSG00000024617.16, intron 2 of 6) protein_coding-intron (ENSMUSG00000024617.16, intron 14 of 18) 11574 ENSMUSG00000098475.1 ENSMUSG00000098475 ENSMUST00000184354 Mir6982 miRNA Interval_88750 chr2 10275678 10276537 + 0 NA Intergenic Intergenic -96341 ENSMUSG00000061186.15 ENSMUSG00000061186 ENSMUST00000041105 Sfmbt2 protein_coding Interval_127062 chr5 100030209 100031054 + 0 NA Intergenic Intergenic 8238 ENSMUSG00000029328.15 ENSMUSG00000029328 ENSMUST00000151323 Hnrnpdl protein_coding Interval_92186 chr2 55549864 55550695 + 0 NA intron (ENSMUSG00000026824.11, intron 2 of 2) protein_coding-intron (ENSMUSG00000026824.11, intron 3 of 3) 113123 ENSMUSG00000026824.11 ENSMUSG00000026824 ENSMUST00000112632 Kcnj3 protein_coding Interval_149726 chr7 100958466 100958919 + 0 NA intron (ENSMUSG00000048779.5, intron 1 of 1) protein_coding-intron (ENSMUSG00000048779.5, intron 1 of 2) 7875 ENSMUSG00000109132.1 ENSMUSG00000109132 ENSMUST00000208262 Gm44545 TEC Interval_15946 chr10 59547251 59549251 + 0 NA intron (ENSMUSG00000009647.13, intron 3 of 3) protein_coding-intron (ENSMUSG00000009647.13, intron 1 of 7) -67813 ENSMUSG00000071280.2 ENSMUSG00000071280 ENSMUST00000238281 Gm10322 antisense Interval_70382 chr17 9595502 9596077 + 0 NA Intergenic Intergenic 46098 ENSMUSG00000117143.1 ENSMUSG00000117143 ENSMUST00000232756 Gm49807 lincRNA Interval_62818 chr15 97195565 97196190 + 0 NA Intergenic Intergenic -28633 ENSMUSG00000116295.1 ENSMUSG00000116295 ENSMUST00000229491 Gm32885 lincRNA Interval_794 chr1 11395328 11396675 + 0 NA Intergenic Intergenic -20917 ENSMUSG00000103825.1 ENSMUSG00000103825 ENSMUST00000194502 Gm38178 TEC Interval_95888 chr2 118063787 118064836 + 0 NA intron (ENSMUSG00000087203.7, intron 4 of 9) processed_transcript-intron (ENSMUSG00000087203.7, intron 4 of 9) 13651 ENSMUSG00000077359.1 ENSMUSG00000077359 ENSMUST00000104171 Gm25308 snRNA Interval_20139 chr10 115218922 115219356 + 0 NA intron (ENSMUSG00000020130.9, intron 3 of 11) protein_coding-intron (ENSMUSG00000020130.9, intron 8 of 16) 32114 ENSMUSG00000020130.9 ENSMUSG00000020130 ENSMUST00000219274 Tbc1d15 protein_coding Interval_90748 chr2 32271412 32272887 + 0 NA TTS (ENSMUSG00000066068.5) processed_pseudogene-TTS (ENSMUSG00000066068.5) 304 ENSMUSG00000066068.5 ENSMUSG00000066068 ENSMUST00000118269 Gm13611 processed_pseudogene Interval_84249 chr19 9016149 9017017 + 0 NA exon (ENSMUSG00000069833.13, exon 5 of 5) protein_coding-exon (ENSMUSG00000069833.13, exon 5 of 5) 27299 ENSMUSG00000069833.13 ENSMUSG00000069833 ENSMUST00000237033 Ahnak protein_coding Interval_102954 chr3 33508170 33508914 + 0 NA Intergenic Intergenic -113066 ENSMUSG00000103423.1 ENSMUSG00000103423 ENSMUST00000195812 Gm5845 processed_pseudogene Interval_71138 chr17 19513176 19513530 + 0 NA intron (ENSMUSG00000091859.2, intron 1 of 5) protein_coding-intron (ENSMUSG00000091859.2, intron 1 of 5) 8553 ENSMUSG00000091859.2 ENSMUSG00000091859 ENSMUST00000231465 Vmn2r100 protein_coding Interval_86500 chr19 41139872 41140212 + 0 NA intron (ENSMUSG00000025013.15, intron 4 of 20) protein_coding-intron (ENSMUSG00000025013.15, intron 4 of 20) 66732 ENSMUSG00000025013.15 ENSMUSG00000025013 ENSMUST00000169941 Tll2 protein_coding Interval_89591 chr2 23077043 23077483 + 0 NA intron (ENSMUSG00000026781.17, intron 2 of 11) protein_coding-intron (ENSMUSG00000026781.17, intron 3 of 12) 8191 ENSMUSG00000026781.17 ENSMUSG00000026781 ENSMUST00000227612 Acbd5 protein_coding Interval_13988 chr10 25296414 25297382 + 0 NA promoter-TSS (ENSMUSG00000039166.16) protein_coding-promoter-TSS (ENSMUSG00000039166.16) -1711 ENSMUSG00000112352.1 ENSMUSG00000112352 ENSMUST00000218840 Gm40617 antisense Interval_3052 chr1 52693052 52693462 + 0 NA intron (ENSMUSG00000041439.15, intron 2 of 6) protein_coding-intron (ENSMUSG00000041439.15, intron 2 of 5) 11505 ENSMUSG00000100302.1 ENSMUSG00000100302 ENSMUST00000190228 Gm29670 sense_intronic Interval_78930 chr18 21969789 21970423 + 0 NA intron (ENSMUSG00000024306.13, intron 21 of 23) protein_coding-intron (ENSMUSG00000024306.13, intron 20 of 22) 201336 ENSMUSG00000024306.13 ENSMUSG00000024306 ENSMUST00000234661 Ccdc178 protein_coding Interval_56854 chr14 122449627 122451505 + 0 NA intron (ENSMUSG00000064052.3, intron 1 of 2) processed_transcript-intron (ENSMUSG00000064052.3, intron 1 of 2) 9455 ENSMUSG00000041703.7 ENSMUSG00000041703 ENSMUST00000143084 Zic5 protein_coding Interval_34309 chr12 3290960 3291483 + 0 NA intron (ENSMUSG00000020671.9, intron 1 of 5) protein_coding-intron (ENSMUSG00000020671.9, intron 1 of 5) 18748 ENSMUSG00000020671.9 ENSMUSG00000020671 ENSMUST00000021001 Rab10 protein_coding Interval_140822 chr6 121640515 121640994 + 0 NA intron (ENSMUSG00000030111.9, intron 4 of 35) protein_coding-intron (ENSMUSG00000030111.9, intron 4 of 35) 5378 ENSMUSG00000030111.9 ENSMUSG00000030111 ENSMUST00000203413 A2m protein_coding Interval_14500 chr10 34387733 34388939 + 0 NA intron (ENSMUSG00000039480.14, intron 5 of 5) protein_coding-intron (ENSMUSG00000039480.14, intron 6 of 11) -1645 ENSMUSG00000039462.4 ENSMUSG00000039462 ENSMUST00000105511 Col10a1 protein_coding Interval_108899 chr3 133111654 133112291 + 0 NA TTS (ENSMUSG00000028016.9) protein_coding-TTS (ENSMUSG00000028016.9) 11585 ENSMUSG00000028016.9 ENSMUSG00000028016 ENSMUST00000160669 Ints12 protein_coding Interval_139335 chr6 99013701 99014611 + 0 NA intron (ENSMUSG00000030067.17, intron 3 of 3) protein_coding-intron (ENSMUSG00000030067.17, intron 4 of 15) 30286 ENSMUSG00000030067.17 ENSMUSG00000030067 ENSMUST00000175838 Foxp1 protein_coding Interval_150354 chr7 109865255 109866449 + 0 NA promoter-TSS (ENSMUSG00000007279.14) protein_coding-promoter-TSS (ENSMUSG00000007279.14) 31704 ENSMUSG00000035901.14 ENSMUSG00000035901 ENSMUST00000151923 Dennd5a protein_coding Interval_61981 chr15 85620966 85621177 + 0 NA Intergenic Intergenic -25012 ENSMUSG00000116004.1 ENSMUSG00000116004 ENSMUST00000230234 Gm49539 lincRNA Interval_20377 chr10 117180820 117181147 + 0 NA exon (ENSMUSG00000112753.1, exon 2 of 2) lincRNA-exon (ENSMUSG00000112753.1, exon 2 of 2) 2428 ENSMUSG00000088397.1 ENSMUSG00000088397 ENSMUST00000157772 Gm26311 snoRNA Interval_33642 chr11 117703781 117704666 + 0 NA intron (ENSMUSG00000025571.13, intron 3 of 20) protein_coding-intron (ENSMUSG00000025571.13, intron 3 of 21) -45008 ENSMUSG00000025571.13 ENSMUSG00000025571 ENSMUST00000141287 Tnrc6c protein_coding Interval_112878 chr4 45735847 45736848 + 0 NA Intergenic Intergenic 21178 ENSMUSG00000085305.1 ENSMUSG00000085305 ENSMUST00000124989 Gm12410 lincRNA Interval_166777 chr9 62555475 62556435 + 0 NA Intergenic Intergenic 40926 ENSMUSG00000084540.1 ENSMUSG00000084540 ENSMUST00000122591 n-R5s84 rRNA Interval_148361 chr7 80762340 80764537 + 0 NA intron (ENSMUSG00000030536.10, intron 5 of 13) protein_coding-intron (ENSMUSG00000030536.10, intron 5 of 37) 11616 ENSMUSG00000108321.1 ENSMUSG00000108321 ENSMUST00000205608 Gm44649 antisense Interval_169605 chr9 99403440 99404961 + 0 NA intron (ENSMUSG00000032470.17, intron 2 of 3) protein_coding-intron (ENSMUSG00000032470.17, intron 2 of 5) -9505 ENSMUSG00000032470.17 ENSMUSG00000032470 ENSMUST00000123771 Mras protein_coding Interval_159137 chr8 90959434 90959945 + 0 NA intron (ENSMUSG00000056608.14, intron 3 of 4) protein_coding-intron (ENSMUSG00000056608.14, intron 4 of 39) -51273 ENSMUSG00000074171.2 ENSMUSG00000074171 ENSMUST00000098517 Gm6658 TEC Interval_116265 chr4 109147261 109148042 + 0 NA intron (ENSMUSG00000028559.17, intron 2 of 22) protein_coding-intron (ENSMUSG00000028559.17, intron 3 of 23) 13546 ENSMUSG00000088014.1 ENSMUSG00000088014 ENSMUST00000157389 Gm23743 misc_RNA Interval_35321 chr12 20614454 20616063 + 0 NA promoter-TSS (ENSMUSG00000114129.1) processed_pseudogene-promoter-TSS (ENSMUSG00000114129.1) -44 ENSMUSG00000114129.1 ENSMUSG00000114129 ENSMUST00000221544 Gm16476 processed_pseudogene Interval_152273 chr7 131296939 131297328 + 0 NA intron (ENSMUSG00000006204.7, intron 66 of 70) protein_coding-intron (ENSMUSG00000030849.18, intron 2 of 6) 25159 ENSMUSG00000040205.8 ENSMUSG00000040205 ENSMUST00000046611 Cuzd1 protein_coding Interval_19291 chr10 96186379 96186642 + 0 NA Intergenic Intergenic 22179 ENSMUSG00000094523.1 ENSMUSG00000094523 ENSMUST00000175297 Gm22913 miRNA Interval_67769 chr16 57033412 57033700 + 0 NA Intergenic Intergenic 37796 ENSMUSG00000046748.8 ENSMUSG00000046748 ENSMUST00000227043 Tmem45a2 protein_coding Interval_90085 chr2 27844695 27845200 + 0 NA Intergenic Intergenic 42105 ENSMUSG00000085766.1 ENSMUSG00000085766 ENSMUST00000154246 2810430I11Rik processed_transcript Interval_42910 chr13 21279427 21280165 + 0 NA Intergenic Intergenic 12935 ENSMUSG00000004344.12 ENSMUSG00000004344 ENSMUST00000110491 Gpx5 protein_coding Interval_94346 chr2 90272651 90272944 + 0 NA Intergenic Intergenic -1765 ENSMUSG00000075062.4 ENSMUSG00000075062 ENSMUST00000099751 Olfr1271 protein_coding Interval_155367 chr8 32581577 32581958 + 0 NA intron (ENSMUSG00000062991.9, intron 1 of 12) protein_coding-intron (ENSMUSG00000062991.9, intron 1 of 8) 360715 ENSMUSG00000079070.10 ENSMUSG00000079070 ENSMUST00000180220 Gm3985 lincRNA Interval_103558 chr3 49382230 49383240 + 0 NA promoter-TSS (ENSMUSG00000104309.1) processed_pseudogene-promoter-TSS (ENSMUSG00000104309.1) 11 ENSMUSG00000104309.1 ENSMUSG00000104309 ENSMUST00000193146 Gm5846 processed_pseudogene Interval_166193 chr9 57353429 57355303 + 0 NA Intergenic Intergenic 20238 ENSMUSG00000066626.5 ENSMUSG00000066626 ENSMUST00000085711 Gm5121 processed_pseudogene Interval_101006 chr2 174196553 174196756 + 0 NA Intergenic Intergenic -51274 ENSMUSG00000098467.1 ENSMUSG00000098467 ENSMUST00000184218 Gm27591 miRNA Interval_113748 chr4 58072740 58073817 + 0 NA exon (ENSMUSG00000028369.15, exon 37 of 48) protein_coding-exon (ENSMUSG00000028369.15, exon 37 of 48) -64154 ENSMUSG00000038709.15 ENSMUSG00000038709 ENSMUST00000239406 Txndc8 protein_coding Interval_135610 chr6 41562893 41563934 + 0 NA Intergenic Intergenic -4961 ENSMUSG00000076499.3 ENSMUSG00000076499 ENSMUST00000193003 Trbv31 TR_V_gene Interval_139907 chr6 112615025 112616612 + 0 NA Intergenic Intergenic 10274 ENSMUSG00000029633.9 ENSMUSG00000029633 ENSMUST00000121490 Gm5578 processed_pseudogene Interval_172811 chrX 50566460 50567017 + 0 NA intron (ENSMUSG00000085396.7, intron 4 of 6) processed_transcript-intron (ENSMUSG00000085396.7, intron 4 of 6) -1855 ENSMUSG00000085396.7 ENSMUSG00000085396 ENSMUST00000148530 Firre processed_transcript Interval_101736 chr3 9285407 9286168 + 0 NA TTS (ENSMUSG00000069114.8) protein_coding-TTS (ENSMUSG00000069114.8) 35185 ENSMUSG00000069114.8 ENSMUSG00000069114 ENSMUST00000155203 Zbtb10 protein_coding Interval_120072 chr4 141651537 141652455 + 0 NA intron (ENSMUSG00000028917.14, intron 1 of 19) protein_coding-intron (ENSMUSG00000028917.14, intron 2 of 19) -20949 ENSMUSG00000028917.14 ENSMUSG00000028917 ENSMUST00000141844 Plekhm2 protein_coding Interval_36838 chr12 54558108 54558876 + 0 NA Intergenic Intergenic -41413 ENSMUSG00000113947.1 ENSMUSG00000113947 ENSMUST00000223133 Gm10465 lincRNA Interval_105742 chr3 89092972 89093484 + 0 NA promoter-TSS (ENSMUSG00000041263.14) protein_coding-promoter-TSS (ENSMUSG00000041263.14) 2755 ENSMUSG00000059743.12 ENSMUSG00000059743 ENSMUST00000198239 Fdps protein_coding Interval_119981 chr4 141213784 141214853 + 0 NA promoter-TSS (ENSMUSG00000073733.4) protein_coding-promoter-TSS (ENSMUSG00000073733.4) -4328 ENSMUSG00000073733.4 ENSMUSG00000073733 ENSMUST00000151475 Cplane2 protein_coding Interval_72782 chr17 32143076 32144148 + 0 NA exon (ENSMUSG00000038146.8, exon 24 of 33) protein_coding-exon (ENSMUSG00000038146.8, exon 24 of 33) -9847 ENSMUSG00000038146.8 ENSMUSG00000038146 ENSMUST00000235816 Notch3 protein_coding Interval_25911 chr11 52491613 52491836 + 0 NA Intergenic Intergenic -4414 ENSMUSG00000083129.1 ENSMUSG00000083129 ENSMUST00000118245 Gm12210 processed_pseudogene Interval_45866 chr13 58629531 58629837 + 0 NA Intergenic Intergenic -18807 ENSMUSG00000021553.14 ENSMUSG00000021553 ENSMUST00000151675 Slc28a3 protein_coding Interval_17998 chr10 81289086 81289430 + 0 NA intron (ENSMUSG00000034917.8, intron 1 of 20) protein_coding-intron (ENSMUSG00000034917.8, intron 1 of 20) 1957 ENSMUSG00000034917.8 ENSMUSG00000034917 ENSMUST00000218966 Tjp3 protein_coding Interval_48091 chr13 95945639 95946640 + 0 NA Intergenic Intergenic 44087 ENSMUSG00000051111.16 ENSMUSG00000051111 ENSMUST00000220740 Sv2c protein_coding Interval_164238 chr9 33715368 33715834 + 0 NA Intergenic Intergenic -12646 ENSMUSG00000079884.6 ENSMUSG00000079884 ENSMUST00000182663 Gm10698 processed_pseudogene Interval_9346 chr1 156481958 156482626 + 0 NA Intergenic Intergenic -8052 ENSMUSG00000026600.12 ENSMUSG00000026600 ENSMUST00000188027 Soat1 protein_coding Interval_2039 chr1 36053996 36055211 + 0 NA Intergenic Intergenic -23585 ENSMUSG00000102434.1 ENSMUSG00000102434 ENSMUST00000195698 Gm38049 TEC Interval_147261 chr7 65233417 65234004 + 0 NA Intergenic Intergenic -20341 ENSMUSG00000108587.1 ENSMUSG00000108587 ENSMUST00000205499 1810049I09Rik lincRNA Interval_95451 chr2 109673550 109674565 + 0 NA promoter-TSS (ENSMUSG00000048482.14) protein_coding-promoter-TSS (ENSMUSG00000048482.14) 891 ENSMUSG00000093410.1 ENSMUSG00000093410 ENSMUST00000175796 Gm20638 processed_transcript Interval_123180 chr5 30423288 30424267 + 0 NA intron (ENSMUSG00000062372.13, intron 3 of 45) protein_coding-intron (ENSMUSG00000062372.13, intron 3 of 46) 38082 ENSMUSG00000062372.13 ENSMUSG00000062372 ENSMUST00000128177 Otof protein_coding Interval_86111 chr19 36815377 36816654 + 0 NA Intergenic Intergenic -2633 ENSMUSG00000117938.1 ENSMUSG00000117938 ENSMUST00000236351 Gm50112 processed_pseudogene Interval_4443 chr1 74235952 74237365 + 0 NA exon (ENSMUSG00000006304.14, exon 1 of 10) protein_coding-exon (ENSMUSG00000006304.14, exon 1 of 10) 574 ENSMUSG00000006304.14 ENSMUSG00000006304 ENSMUST00000113819 Arpc2 protein_coding Interval_9329 chr1 156288937 156289831 + 0 NA TTS (ENSMUSG00000102372.1) TEC-TTS (ENSMUSG00000102372.1) 1363 ENSMUSG00000102372.1 ENSMUSG00000102372 ENSMUST00000195348 A430050A11Rik TEC Interval_40757 chr12 108198089 108198605 + 0 NA promoter-TSS (ENSMUSG00000021258.10) protein_coding-promoter-TSS (ENSMUSG00000021258.10) -738 ENSMUSG00000021258.10 ENSMUSG00000021258 ENSMUST00000223363 Ccnk protein_coding Interval_128571 chr5 114090718 114091851 + 0 NA promoter-TSS (ENSMUSG00000042078.14) protein_coding-promoter-TSS (ENSMUSG00000042078.14) 83 ENSMUSG00000042078.14 ENSMUSG00000042078 ENSMUST00000150106 Svop protein_coding Interval_1465 chr1 23826222 23827631 + 0 NA intron (ENSMUSG00000026156.8, intron 2 of 3) protein_coding-intron (ENSMUSG00000026156.8, intron 2 of 3) 65173 ENSMUSG00000026156.8 ENSMUSG00000026156 ENSMUST00000140583 B3gat2 protein_coding Interval_29331 chr11 83225287 83225746 + 0 NA TTS (ENSMUSG00000087107.8) processed_transcript-TTS (ENSMUSG00000087107.8) 1062 ENSMUSG00000083161.2 ENSMUSG00000083161 ENSMUST00000215482 Gm11427 transcribed_unprocessed_pseudogene Interval_173727 chrX 103164972 103165768 + 0 NA promoter-TSS (ENSMUSG00000048949.8) processed_pseudogene-promoter-TSS (ENSMUSG00000048949.8) 37 ENSMUSG00000048949.8 ENSMUSG00000048949 ENSMUST00000133472 Gm6206 processed_pseudogene Interval_42183 chr13 9647476 9647710 + 0 NA intron (ENSMUSG00000048264.16, intron 11 of 15) protein_coding-intron (ENSMUSG00000048264.16, intron 34 of 38) -10504 ENSMUSG00000113355.1 ENSMUSG00000113355 ENSMUST00000223052 Gm48888 TEC Interval_64304 chr16 10359175 10359563 + 0 NA intron (ENSMUSG00000039179.13, intron 6 of 6) protein_coding-intron (ENSMUSG00000039179.13, intron 6 of 6) -28084 ENSMUSG00000116270.1 ENSMUSG00000116270 ENSMUST00000229862 Gm1600 lincRNA Interval_108252 chr3 122994508 122995303 + 0 NA promoter-TSS (ENSMUSG00000105478.1) TEC-promoter-TSS (ENSMUSG00000105478.1) -506 ENSMUSG00000105478.1 ENSMUSG00000105478 ENSMUST00000196563 Gm43285 TEC Interval_87715 chr19 55348674 55349010 + 0 NA intron (ENSMUSG00000024983.10, intron 3 of 7) protein_coding-intron (ENSMUSG00000024983.10, intron 3 of 7) 32515 ENSMUSG00000024983.10 ENSMUSG00000024983 ENSMUST00000224396 Vti1a protein_coding Interval_88194 chr19 60570131 60570390 + 0 NA intron (ENSMUSG00000033417.16, intron 1 of 7) protein_coding-intron (ENSMUSG00000033417.16, intron 1 of 8) -10269 ENSMUSG00000092655.1 ENSMUSG00000092655 ENSMUST00000174914 Gm25238 miRNA Interval_10748 chr1 174103612 174103915 + 0 NA TTS (ENSMUSG00000059371.4) protein_coding-TTS (ENSMUSG00000059371.4) 6872 ENSMUSG00000059371.4 ENSMUSG00000059371 ENSMUST00000080831 Olfr427 protein_coding Interval_147302 chr7 65686962 65687184 + 0 NA intron (ENSMUSG00000030515.9, intron 5 of 5) protein_coding-intron (ENSMUSG00000030515.9, intron 16 of 18) -6403 ENSMUSG00000078681.10 ENSMUSG00000078681 ENSMUST00000206361 Tm2d3 protein_coding Interval_118444 chr4 131647941 131648755 + 0 NA intron (ENSMUSG00000087171.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000087171.1, intron 2 of 2) 23793 ENSMUSG00000087171.1 ENSMUSG00000087171 ENSMUST00000138697 Gm12962 lincRNA Interval_174442 chrX 152326860 152328032 + 0 NA promoter-TSS (ENSMUSG00000087403.9) protein_coding-promoter-TSS (ENSMUSG00000087403.9) 49 ENSMUSG00000087403.9 ENSMUSG00000087403 ENSMUST00000154085 Kantr protein_coding Interval_169086 chr9 92144859 92145052 + 0 NA Intergenic Intergenic -47981 ENSMUSG00000095654.2 ENSMUSG00000095654 ENSMUST00000179751 Plscr5 protein_coding Interval_80204 chr18 38238941 38239809 + 0 NA intron (ENSMUSG00000097080.8, intron 1 of 1) lincRNA-intron (ENSMUSG00000097080.8, intron 1 of 1) -5453 ENSMUSG00000066475.6 ENSMUSG00000066475 ENSMUST00000085340 Gm10268 processed_pseudogene Interval_106689 chr3 98940752 98942074 + 0 NA promoter-TSS (ENSMUSG00000085121.2) lincRNA-promoter-TSS (ENSMUSG00000085121.2) -157 ENSMUSG00000085121.2 ENSMUSG00000085121 ENSMUST00000155540 5730437C11Rik lincRNA Interval_148713 chr7 84475017 84475331 + 0 NA Intergenic Intergenic -30623 ENSMUSG00000109347.1 ENSMUSG00000109347 ENSMUST00000208295 Gm45175 lincRNA Interval_106188 chr3 94458608 94458889 + 0 NA Intergenic Intergenic 5579 ENSMUSG00000104695.1 ENSMUSG00000104695 ENSMUST00000197970 Gm30023 processed_pseudogene Interval_49452 chr13 112137080 112137563 + 0 NA promoter-TSS (ENSMUSG00000114361.1) processed_pseudogene-promoter-TSS (ENSMUSG00000114361.1) -795 ENSMUSG00000114361.1 ENSMUSG00000114361 ENSMUST00000224924 Gm31104 processed_pseudogene Interval_124593 chr5 52138492 52139530 + 0 NA TTS (ENSMUSG00000106648.1) TEC-TTS (ENSMUSG00000106648.1) -2994 ENSMUSG00000098726.1 ENSMUSG00000098726 ENSMUST00000183815 Mir6417 miRNA Interval_87236 chr19 47120822 47121754 + 0 NA intron (ENSMUSG00000025047.9, intron 25 of 35) protein_coding-intron (ENSMUSG00000025047.9, intron 25 of 35) -7370 ENSMUSG00000025047.9 ENSMUSG00000025047 ENSMUST00000236656 Pdcd11 protein_coding Interval_124945 chr5 61332559 61332887 + 0 NA Intergenic Intergenic 6010 ENSMUSG00000106370.2 ENSMUSG00000106370 ENSMUST00000198954 Gm43382 processed_pseudogene Interval_164854 chr9 42460683 42462142 + 0 NA promoter-TSS (ENSMUSG00000037287.15) protein_coding-promoter-TSS (ENSMUSG00000037287.15) 10827 ENSMUSG00000037287.15 ENSMUSG00000037287 ENSMUST00000213428 Tbcel protein_coding Interval_162771 chr9 8899780 8902331 + 0 NA exon (ENSMUSG00000031870.16, exon 1 of 8) protein_coding-exon (ENSMUSG00000031870.16, exon 1 of 8) 1222 ENSMUSG00000031870.16 ENSMUSG00000031870 ENSMUST00000098986 Pgr protein_coding Interval_8517 chr1 140513108 140513720 + 0 NA intron (ENSMUSG00000052726.16, intron 1 of 4) protein_coding-intron (ENSMUSG00000052726.16, intron 16 of 26) 142990 ENSMUSG00000102368.1 ENSMUSG00000102368 ENSMUST00000193820 4930590L20Rik antisense Interval_80802 chr18 47341894 47342448 + 0 NA intron (ENSMUSG00000019647.16, intron 1 of 16) protein_coding-intron (ENSMUSG00000019647.16, intron 1 of 18) -8823 ENSMUSG00000019647.16 ENSMUSG00000019647 ENSMUST00000144223 Sema6a protein_coding Interval_11997 chr1 188656017 188656229 + 0 NA intron (ENSMUSG00000026609.15, intron 12 of 12) protein_coding-intron (ENSMUSG00000026609.15, intron 36 of 70) -33070 ENSMUSG00000077235.1 ENSMUSG00000077235 ENSMUST00000104047 Gm25095 snoRNA Interval_144620 chr7 27172477 27173163 + 0 NA intron (ENSMUSG00000095538.1, intron 7 of 8) protein_coding-intron (ENSMUSG00000053291.15, intron 6 of 7) 3273 ENSMUSG00000093348.1 ENSMUSG00000093348 ENSMUST00000175607 Mir3101 miRNA Interval_49278 chr13 110062305 110063483 + 0 NA intron (ENSMUSG00000021700.10, intron 4 of 4) protein_coding-intron (ENSMUSG00000021700.10, intron 4 of 4) 159085 ENSMUSG00000084651.1 ENSMUSG00000084651 ENSMUST00000122702 Mir1904 miRNA Interval_36036 chr12 33496638 33496892 + 0 NA exon (ENSMUSG00000112076.1, exon 1 of 1) processed_pseudogene-exon (ENSMUSG00000112076.1, exon 1 of 1) 132 ENSMUSG00000112076.1 ENSMUSG00000112076 ENSMUST00000219348 Gm9368 processed_pseudogene Interval_94182 chr2 84893245 84893607 + 0 NA Intergenic Intergenic -6716 ENSMUSG00000050896.12 ENSMUSG00000050896 ENSMUST00000151759 Rtn4rl2 protein_coding Interval_118513 chr4 132192561 132194530 + 0 NA intron (ENSMUSG00000040025.17, intron 3 of 3) protein_coding-intron (ENSMUSG00000040025.17, intron 3 of 3) 17264 ENSMUSG00000040025.17 ENSMUSG00000040025 ENSMUST00000102570 Ythdf2 protein_coding Interval_75025 chr17 61397367 61397880 + 0 NA exon (ENSMUSG00000117016.1, exon 1 of 1) processed_pseudogene-exon (ENSMUSG00000117016.1, exon 1 of 1) 313 ENSMUSG00000117016.1 ENSMUSG00000117016 ENSMUST00000233539 Gm6174 processed_pseudogene Interval_114467 chr4 79720005 79721374 + 0 NA Intergenic Intergenic -153662 ENSMUSG00000084248.1 ENSMUSG00000084248 ENSMUST00000118621 Gm11409 processed_pseudogene Interval_32925 chr11 113164945 113165777 + 0 NA intron (ENSMUSG00000087259.7, intron 1 of 3) lincRNA-intron (ENSMUSG00000087259.7, intron 1 of 2) 7716 ENSMUSG00000087259.7 ENSMUSG00000087259 ENSMUST00000150712 2610035D17Rik lincRNA Interval_120176 chr4 143196923 143197127 + 0 NA intron (ENSMUSG00000057637.13, intron 1 of 3) protein_coding-intron (ENSMUSG00000057637.13, intron 1 of 9) -7040 ENSMUSG00000087903.1 ENSMUSG00000087903 ENSMUST00000157278 Gm22039 snoRNA Interval_69594 chr16 94506403 94507245 + 0 NA intron (ENSMUSG00000022898.13, intron 3 of 4) protein_coding-intron (ENSMUSG00000022898.13, intron 3 of 7) -2437 ENSMUSG00000022898.13 ENSMUSG00000022898 ENSMUST00000142988 Vps26c protein_coding Interval_151246 chr7 120141845 120142163 + 0 NA intron (ENSMUSG00000030911.7, intron 4 of 17) protein_coding-intron (ENSMUSG00000030911.7, intron 4 of 17) 3285 ENSMUSG00000030911.7 ENSMUSG00000030911 ENSMUST00000207333 Zp2 protein_coding Interval_158980 chr8 88390760 88391015 + 0 NA promoter-TSS (ENSMUSG00000110280.1) processed_pseudogene-promoter-TSS (ENSMUSG00000110280.1) -234 ENSMUSG00000110280.1 ENSMUSG00000110280 ENSMUST00000211701 Gm45497 processed_pseudogene Interval_90482 chr2 30725425 30726229 + 0 NA Intergenic Intergenic 4617 ENSMUSG00000093091.1 ENSMUSG00000093091 ENSMUST00000175350 Mir3089 miRNA Interval_80185 chr18 38090866 38091084 + 0 NA Intergenic Intergenic 67446 ENSMUSG00000118056.1 ENSMUSG00000118056 ENSMUST00000236681 Gm30093 lincRNA Interval_62117 chr15 87227279 87229002 + 0 NA Intergenic Intergenic -15410 ENSMUSG00000115930.1 ENSMUSG00000115930 ENSMUST00000229090 A930027H12Rik lincRNA Interval_130308 chr5 125549551 125550335 + 0 NA intron (ENSMUSG00000070498.3, intron 1 of 8) protein_coding-intron (ENSMUSG00000070498.3, intron 1 of 8) 18169 ENSMUSG00000070498.3 ENSMUSG00000070498 ENSMUST00000184422 Tmem132b protein_coding Interval_83076 chr18 81088430 81089199 + 0 NA intron (ENSMUSG00000118262.1, intron 2 of 2) lincRNA-intron (ENSMUSG00000118262.1, intron 2 of 2) 5750 ENSMUSG00000118262.1 ENSMUSG00000118262 ENSMUST00000237649 Gm50423 lincRNA Interval_38220 chr12 76436901 76437091 + 0 NA TTS (ENSMUSG00000052221.8) protein_coding-TTS (ENSMUSG00000052221.8) -12702 ENSMUSG00000073000.3 ENSMUSG00000073000 ENSMUST00000220043 Gm10451 lincRNA Interval_170183 chr9 106013078 106013576 + 0 NA promoter-TSS (ENSMUSG00000111796.1) antisense-promoter-TSS (ENSMUSG00000111796.1) 119 ENSMUSG00000032572.9 ENSMUSG00000032572 ENSMUST00000137847 Col6a4 protein_coding Interval_137638 chr6 77042791 77043181 + 0 NA intron (ENSMUSG00000063063.12, intron 2 of 7) protein_coding-intron (ENSMUSG00000063063.12, intron 9 of 17) 100957 ENSMUSG00000063063.12 ENSMUSG00000063063 ENSMUST00000160252 Ctnna2 protein_coding Interval_64293 chr16 10283354 10283546 + 0 NA exon (ENSMUSG00000022505.9, exon 5 of 5) protein_coding-exon (ENSMUSG00000022505.9, exon 5 of 5) 9700 ENSMUSG00000093251.1 ENSMUSG00000093251 ENSMUST00000175510 Gm22932 miRNA Interval_158305 chr8 80978354 80979664 + 0 NA Intergenic Intergenic 35904 ENSMUSG00000038250.9 ENSMUSG00000038250 ENSMUST00000211538 Usp38 protein_coding Interval_156462 chr8 48439748 48439990 + 0 NA intron (ENSMUSG00000031561.16, intron 2 of 26) protein_coding-intron (ENSMUSG00000031561.16, intron 2 of 28) 115444 ENSMUSG00000031561.16 ENSMUSG00000031561 ENSMUST00000211812 Tenm3 protein_coding Interval_93011 chr2 69576351 69576669 + 0 NA intron (ENSMUSG00000027070.14, intron 1 of 24) protein_coding-intron (ENSMUSG00000027070.14, intron 1 of 78) -67365 ENSMUSG00000027070.14 ENSMUSG00000027070 ENSMUST00000092551 Lrp2 protein_coding Interval_34705 chr12 8811749 8811976 + 0 NA Intergenic Intergenic 40449 ENSMUSG00000020592.14 ENSMUSG00000020592 ENSMUST00000160348 Sdc1 protein_coding Interval_12655 chr10 4175761 4176079 + 0 NA Intergenic Intergenic 6033 ENSMUSG00000089473.1 ENSMUSG00000089473 ENSMUST00000158848 Gm25369 snoRNA Interval_171873 chr9 121918945 121919562 + 0 NA Intergenic Intergenic -2948 ENSMUSG00000050445.4 ENSMUSG00000050445 ENSMUST00000062474 Cyp8b1 protein_coding Interval_92189 chr2 55636263 55636535 + 0 NA Intergenic Intergenic -139149 ENSMUSG00000082971.1 ENSMUSG00000082971 ENSMUST00000120782 Gm13517 processed_pseudogene Interval_12676 chr10 4275359 4276654 + 0 NA intron (ENSMUSG00000038587.10, intron 1 of 3) protein_coding-intron (ENSMUSG00000038587.10, intron 1 of 3) -58539 ENSMUSG00000038587.10 ENSMUSG00000038587 ENSMUST00000215696 Akap12 protein_coding Interval_117162 chr4 120158754 120159313 + 0 NA Intergenic Intergenic -2173 ENSMUSG00000028635.7 ENSMUSG00000028635 ENSMUST00000030384 Edn2 protein_coding Interval_96672 chr2 127049413 127050318 + 0 NA intron (ENSMUSG00000001998.15, intron 13 of 15) protein_coding-intron (ENSMUSG00000001998.15, intron 14 of 20) 9304 ENSMUSG00000092918.1 ENSMUSG00000092918 ENSMUST00000175177 Gm24081 miRNA Interval_73406 chr17 37020522 37021034 + 0 NA intron (ENSMUSG00000076439.12, intron 1 of 6) protein_coding-intron (ENSMUSG00000076439.12, intron 1 of 7) 2421 ENSMUSG00000076439.12 ENSMUSG00000076439 ENSMUST00000167275 Mog protein_coding Interval_170739 chr9 110439970 110440979 + 0 NA intron (ENSMUSG00000054792.15, intron 3 of 8) protein_coding-intron (ENSMUSG00000054792.15, intron 4 of 9) 14927 ENSMUSG00000054792.15 ENSMUSG00000054792 ENSMUST00000198327 Klhl18 protein_coding Interval_65984 chr16 30711928 30712934 + 0 NA Intergenic Intergenic 80824 ENSMUSG00000116570.1 ENSMUSG00000116570 ENSMUST00000231445 Gm49754 lincRNA Interval_13700 chr10 21158229 21161720 + 0 NA intron (ENSMUSG00000019982.15, intron 1 of 15) protein_coding-intron (ENSMUSG00000019982.15, intron 1 of 14) -13213 ENSMUSG00000019982.15 ENSMUSG00000019982 ENSMUST00000214539 Myb protein_coding Interval_41611 chr12 116947997 116949130 + 0 NA intron (ENSMUSG00000056553.14, intron 11 of 22) protein_coding-intron (ENSMUSG00000056553.14, intron 11 of 22) -95461 ENSMUSG00000113795.1 ENSMUSG00000113795 ENSMUST00000220994 Gm48119 processed_pseudogene Interval_24150 chr11 30749017 30750859 + 0 NA promoter-TSS (ENSMUSG00000087474.1) processed_transcript-promoter-TSS (ENSMUSG00000087474.1) -894 ENSMUSG00000087474.1 ENSMUSG00000087474 ENSMUST00000150255 Gm12100 processed_transcript Interval_105590 chr3 87952105 87953263 + 0 NA exon (ENSMUSG00000004885.5, exon 2 of 2) protein_coding-exon (ENSMUSG00000004885.5, exon 2 of 2) 540 ENSMUSG00000004885.5 ENSMUSG00000004885 ENSMUST00000163040 Crabp2 protein_coding Interval_6475 chr1 111211986 111212214 + 0 NA Intergenic Intergenic -173818 ENSMUSG00000101846.1 ENSMUSG00000101846 ENSMUST00000185792 Gm19927 processed_pseudogene Interval_44951 chr13 50750393 50750808 + 0 NA Intergenic Intergenic 14648 ENSMUSG00000113652.1 ENSMUSG00000113652 ENSMUST00000221281 4930518P08Rik lincRNA Interval_62139 chr15 87923680 87924213 + 0 NA Intergenic Intergenic -43470 ENSMUSG00000116061.1 ENSMUSG00000116061 ENSMUST00000229118 Gm49472 lincRNA Interval_60779 chr15 76701016 76702396 + 0 NA promoter-TSS (ENSMUSG00000019080.8) protein_coding-promoter-TSS (ENSMUSG00000019080.8) -1393 ENSMUSG00000019080.8 ENSMUSG00000019080 ENSMUST00000230468 Mfsd3 protein_coding Interval_160890 chr8 114676493 114677801 + 0 NA intron (ENSMUSG00000004637.15, intron 1 of 2) protein_coding-intron (ENSMUSG00000004637.15, intron 5 of 8) 30859 ENSMUSG00000089797.1 ENSMUSG00000089797 ENSMUST00000161914 Gm16118 antisense Interval_141500 chr6 128653852 128654062 + 0 NA intron (ENSMUSG00000030363.8, intron 5 of 5) unprocessed_pseudogene-intron (ENSMUSG00000030363.8, intron 5 of 5) -4153 ENSMUSG00000107425.1 ENSMUSG00000107425 ENSMUST00000203942 Gm44216 processed_pseudogene Interval_152734 chr7 137010241 137011013 + 0 NA intron (ENSMUSG00000054612.4, intron 2 of 4) protein_coding-intron (ENSMUSG00000054612.4, intron 2 of 4) 89686 ENSMUSG00000109721.1 ENSMUSG00000109721 ENSMUST00000210484 Gm45280 TEC Interval_62152 chr15 88286280 88286989 + 0 NA intron (ENSMUSG00000115880.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000115880.1, intron 1 of 2) -28240 ENSMUSG00000116331.1 ENSMUSG00000116331 ENSMUST00000230919 B230214G05Rik lincRNA Interval_38603 chr12 80406492 80408606 + 0 NA intron (ENSMUSG00000049106.7, intron 1 of 3) protein_coding-intron (ENSMUSG00000049106.7, intron 1 of 8) -15798 ENSMUSG00000088158.1 ENSMUSG00000088158 ENSMUST00000157533 Scarna3b scaRNA Interval_3672 chr1 60565282 60567378 + 0 NA intron (ENSMUSG00000026014.15, intron 1 of 3) protein_coding-intron (ENSMUSG00000026014.15, intron 1 of 15) 26379 ENSMUSG00000082160.1 ENSMUSG00000082160 ENSMUST00000118530 Gm11578 processed_pseudogene Interval_144168 chr7 19770024 19771685 + 0 NA promoter-TSS (ENSMUSG00000002980.14) protein_coding-promoter-TSS (ENSMUSG00000002980.14) 162 ENSMUSG00000002980.14 ENSMUSG00000002980 ENSMUST00000133427 Bcam protein_coding Interval_84462 chr19 11285027 11285271 + 0 NA intron (ENSMUSG00000097091.1, intron 1 of 2) antisense-intron (ENSMUSG00000097091.1, intron 1 of 2) -5706 ENSMUSG00000054523.13 ENSMUSG00000054523 ENSMUST00000188267 Ms4a5 protein_coding Interval_60170 chr15 66930556 66930761 + 0 NA TTS (ENSMUSG00000005125.13) protein_coding-TTS (ENSMUSG00000005125.13) 1051 ENSMUSG00000091479.1 ENSMUSG00000091479 ENSMUST00000170557 Gm17035 antisense Interval_109320 chr3 138889029 138889727 + 0 NA intron (ENSMUSG00000028152.10, intron 2 of 3) protein_coding-intron (ENSMUSG00000028152.10, intron 2 of 7) -60216 ENSMUSG00000086123.3 ENSMUSG00000086123 ENSMUST00000153140 Gm16060 processed_pseudogene Interval_124774 chr5 53840242 53840678 + 0 NA intron (ENSMUSG00000039178.9, intron 8 of 8) protein_coding-intron (ENSMUSG00000039178.9, intron 8 of 20) -50644 ENSMUSG00000039178.9 ENSMUSG00000039178 ENSMUST00000202880 Tbc1d19 protein_coding Interval_5172 chr1 86228918 86229128 + 0 NA intron (ENSMUSG00000062590.13, intron 7 of 8) protein_coding-intron (ENSMUSG00000062590.13, intron 19 of 24) 72352 ENSMUSG00000087538.1 ENSMUSG00000087538 ENSMUST00000126385 Gm16341 antisense Interval_13570 chr10 19835772 19836657 + 0 NA Intergenic Intergenic 15245 ENSMUSG00000050473.5 ENSMUSG00000050473 ENSMUST00000059805 Slc35d3 protein_coding Interval_10331 chr1 169479818 169481073 + 0 NA Intergenic Intergenic -26576 ENSMUSG00000058622.1 ENSMUSG00000058622 ENSMUST00000076828 Gm5265 processed_pseudogene Interval_16735 chr10 67736714 67737012 + 0 NA Intergenic Intergenic -18824 ENSMUSG00000112619.1 ENSMUSG00000112619 ENSMUST00000218164 1700030E10Rik lincRNA Interval_14355 chr10 31436408 31436780 + 0 NA intron (ENSMUSG00000000296.8, intron 1 of 5) protein_coding-intron (ENSMUSG00000000296.8, intron 1 of 6) 6601 ENSMUSG00000110976.1 ENSMUSG00000110976 ENSMUST00000215166 Gm48093 antisense Interval_28615 chr11 77172296 77172490 + 0 NA exon (ENSMUSG00000050944.14, exon 2 of 18) protein_coding-exon (ENSMUSG00000050944.14, exon 2 of 18) -3477 ENSMUSG00000050944.14 ENSMUSG00000050944 ENSMUST00000155085 Efcab5 protein_coding Interval_149423 chr7 98382444 98382698 + 0 NA Intergenic Intergenic -22384 ENSMUSG00000049580.12 ENSMUSG00000049580 ENSMUST00000206770 Tsku protein_coding Interval_48776 chr13 103105450 103105817 + 0 NA intron (ENSMUSG00000034751.17, intron 3 of 3) protein_coding-intron (ENSMUSG00000034751.17, intron 3 of 4) -8788 ENSMUSG00000034751.17 ENSMUSG00000034751 ENSMUST00000187024 Mast4 protein_coding Interval_35916 chr12 31912626 31913083 + 0 NA intron (ENSMUSG00000035933.5, intron 2 of 4) protein_coding-intron (ENSMUSG00000035933.5, intron 19 of 22) -12840 ENSMUSG00000035933.5 ENSMUSG00000035933 ENSMUST00000219837 Cog5 protein_coding Interval_71639 chr17 25047297 25048233 + 0 NA intron (ENSMUSG00000024169.16, intron 1 of 14) protein_coding-intron (ENSMUSG00000024169.16, intron 14 of 29) 15930 ENSMUSG00000024169.16 ENSMUSG00000024169 ENSMUST00000139300 Ift140 protein_coding Interval_63925 chr16 4602002 4603563 + 0 NA intron (ENSMUSG00000014303.13, intron 1 of 2) protein_coding-intron (ENSMUSG00000014303.13, intron 1 of 6) 1619 ENSMUSG00000014303.13 ENSMUSG00000014303 ENSMUST00000127120 Glis2 protein_coding Interval_150385 chr7 110061488 110062278 + 0 NA promoter-TSS (ENSMUSG00000073867.2) TEC-promoter-TSS (ENSMUSG00000073867.2) 173 ENSMUSG00000061079.14 ENSMUSG00000061079 ENSMUST00000209252 Zfp143 protein_coding Interval_3044 chr1 52596784 52598911 + 0 NA Intergenic Intergenic 13329 ENSMUSG00000100007.1 ENSMUSG00000100007 ENSMUST00000179821 Gm5527 processed_pseudogene Interval_55896 chr14 101869334 101870906 + 0 NA intron (ENSMUSG00000033060.16, intron 1 of 4) protein_coding-intron (ENSMUSG00000033060.16, intron 4 of 30) 29613 ENSMUSG00000033060.16 ENSMUSG00000033060 ENSMUST00000160038 Lmo7 protein_coding Interval_105864 chr3 89814269 89814514 + 0 NA Intergenic Intergenic -6607 ENSMUSG00000106564.1 ENSMUSG00000106564 ENSMUST00000199694 Gm8969 processed_pseudogene Interval_50322 chr14 11836173 11836515 + 0 NA intron (ENSMUSG00000021745.14, intron 2 of 3) protein_coding-intron (ENSMUSG00000021745.14, intron 2 of 29) -31250 ENSMUSG00000114431.1 ENSMUSG00000114431 ENSMUST00000224051 Gm48601 TEC Interval_114293 chr4 71253989 71254466 + 0 NA Intergenic Intergenic -31715 ENSMUSG00000082017.1 ENSMUSG00000082017 ENSMUST00000121993 Gm11229 processed_pseudogene Interval_128380 chr5 112986712 112987630 + 0 NA intron (ENSMUSG00000042249.11, intron 1 of 19) protein_coding-intron (ENSMUSG00000042249.11, intron 1 of 20) 28343 ENSMUSG00000042249.11 ENSMUSG00000042249 ENSMUST00000197776 Grk3 protein_coding Interval_92305 chr2 58551809 58552241 + 0 NA intron (ENSMUSG00000026836.15, intron 1 of 11) protein_coding-intron (ENSMUSG00000026836.15, intron 1 of 10) -35753 ENSMUSG00000026836.15 ENSMUSG00000026836 ENSMUST00000126407 Acvr1 protein_coding Interval_164532 chr9 37845836 37846121 + 0 NA Intergenic Intergenic -8291 ENSMUSG00000066749.3 ENSMUSG00000066749 ENSMUST00000086063 Olfr877 protein_coding Interval_16986 chr10 70291867 70292766 + 0 NA Intergenic Intergenic -4140 ENSMUSG00000052426.4 ENSMUSG00000052426 ENSMUST00000064271 Gm9877 pseudogene Interval_140471 chr6 118513378 118514217 + 0 NA intron (ENSMUSG00000007827.10, intron 28 of 33) protein_coding-intron (ENSMUSG00000007827.10, intron 28 of 33) 9438 ENSMUSG00000007827.10 ENSMUSG00000007827 ENSMUST00000188022 Ankrd26 protein_coding Interval_131330 chr5 136521606 136521834 + 0 NA intron (ENSMUSG00000029705.17, intron 1 of 1) protein_coding-intron (ENSMUSG00000029705.17, intron 1 of 23) 14757 ENSMUSG00000104369.1 ENSMUSG00000104369 ENSMUST00000192800 Gm38082 TEC Interval_157522 chr8 71193575 71193808 + 0 NA Intergenic Intergenic -30258 ENSMUSG00000110664.1 ENSMUSG00000110664 ENSMUST00000212311 Aprt-ps processed_pseudogene Interval_84573 chr19 12824655 12825226 + 0 NA exon (ENSMUSG00000024696.9, exon 6 of 9) protein_coding-exon (ENSMUSG00000024696.9, exon 6 of 9) -21742 ENSMUSG00000091014.3 ENSMUSG00000091014 ENSMUST00000189517 Gm5244 protein_coding Interval_29237 chr11 81966841 81967196 + 0 NA intron (ENSMUSG00000020704.13, intron 1 of 9) protein_coding-intron (ENSMUSG00000020704.13, intron 1 of 9) 1439 ENSMUSG00000020704.13 ENSMUSG00000020704 ENSMUST00000066197 Asic2 protein_coding Interval_92171 chr2 55263864 55264052 + 0 NA Intergenic Intergenic -28107 ENSMUSG00000082301.1 ENSMUSG00000082301 ENSMUST00000117686 Gm14032 processed_pseudogene Interval_172487 chrX 21213271 21213687 + 0 NA intron (ENSMUSG00000087358.8, intron 4 of 4) lincRNA-intron (ENSMUSG00000087358.8, intron 4 of 4) -6165 ENSMUSG00000087358.8 ENSMUSG00000087358 ENSMUST00000155208 4930453H23Rik lincRNA Interval_117278 chr4 121224929 121226630 + 0 NA Intergenic Intergenic 1694 ENSMUSG00000080706.1 ENSMUSG00000080706 ENSMUST00000120885 Gm12890 processed_pseudogene Interval_126230 chr5 83439634 83440599 + 0 NA Intergenic Intergenic -24678 ENSMUSG00000104537.1 ENSMUSG00000104537 ENSMUST00000196348 Gm44303 miRNA Interval_46384 chr13 64367442 64367786 + 0 NA promoter-TSS (ENSMUSG00000021477.9) protein_coding-promoter-TSS (ENSMUSG00000021477.9) 2692 ENSMUSG00000021477.9 ENSMUSG00000021477 ENSMUST00000220617 Ctsl protein_coding Interval_79868 chr18 35652001 35655689 + 0 NA exon (ENSMUSG00000073600.5, exon 1 of 1) protein_coding-exon (ENSMUSG00000073600.5, exon 1 of 1) -1839 ENSMUSG00000073600.5 ENSMUSG00000073600 ENSMUST00000097619 Prob1 protein_coding Interval_122993 chr5 28237616 28238973 + 0 NA promoter-TSS (ENSMUSG00000044681.19) protein_coding-promoter-TSS (ENSMUSG00000044681.19) 7512 ENSMUSG00000044681.19 ENSMUSG00000044681 ENSMUST00000141196 Cnpy1 protein_coding Interval_102122 chr3 18140414 18140638 + 0 NA intron (ENSMUSG00000039519.6, intron 1 of 5) protein_coding-intron (ENSMUSG00000039519.6, intron 1 of 5) 37099 ENSMUSG00000096391.1 ENSMUSG00000096391 ENSMUST00000083241 Gm23686 snRNA Interval_70533 chr17 11664571 11664896 + 0 NA intron (ENSMUSG00000023826.16, intron 6 of 10) protein_coding-intron (ENSMUSG00000023826.16, intron 7 of 11) 67612 ENSMUSG00000104466.1 ENSMUSG00000104466 ENSMUST00000194203 Gm10513 TEC Interval_54285 chr14 67163929 67164929 + 0 NA Intergenic Intergenic -5159 ENSMUSG00000114697.1 ENSMUSG00000114697 ENSMUST00000225163 Gm30806 lincRNA Interval_124537 chr5 50171387 50171620 + 0 NA Intergenic Intergenic 20170 ENSMUSG00000104870.1 ENSMUSG00000104870 ENSMUST00000197958 4930448I18Rik lincRNA Interval_135314 chr6 38236258 38236714 + 0 NA intron (ENSMUSG00000063455.16, intron 1 of 19) protein_coding-intron (ENSMUSG00000063455.16, intron 1 of 19) 17523 ENSMUSG00000063455.16 ENSMUSG00000063455 ENSMUST00000152464 D630045J12Rik protein_coding Interval_22178 chr11 6846618 6847526 + 0 NA Intergenic Intergenic -9947 ENSMUSG00000099102.1 ENSMUSG00000099102 ENSMUST00000184940 Gm11983 protein_coding Interval_99899 chr2 165701298 165701641 + 0 NA intron (ENSMUSG00000017897.18, intron 6 of 7) protein_coding-intron (ENSMUSG00000017897.18, intron 5 of 15) -34612 ENSMUSG00000081758.1 ENSMUSG00000081758 ENSMUST00000118200 Gm11460 processed_pseudogene Interval_117427 chr4 123631560 123631948 + 0 NA intron (ENSMUSG00000028649.21, intron 1 of 97) protein_coding-intron (ENSMUSG00000028649.21, intron 1 of 92) 1459 ENSMUSG00000081585.1 ENSMUSG00000081585 ENSMUST00000121158 Gm12926 processed_pseudogene Interval_111611 chr4 24557895 24558180 + 0 NA intron (ENSMUSG00000045751.16, intron 13 of 16) protein_coding-intron (ENSMUSG00000045751.16, intron 12 of 22) 61586 ENSMUSG00000045751.16 ENSMUSG00000045751 ENSMUST00000123984 Mms22l protein_coding Interval_152422 chr7 132965645 132966251 + 0 NA intron (ENSMUSG00000030967.15, intron 2 of 9) protein_coding-intron (ENSMUSG00000030967.15, intron 1 of 8) 17604 ENSMUSG00000085663.1 ENSMUSG00000085663 ENSMUST00000131085 Gm15718 antisense Interval_149940 chr7 102992851 102993180 + 0 NA Intergenic Intergenic -3691 ENSMUSG00000045792.2 ENSMUSG00000045792 ENSMUST00000056235 Olfr578 protein_coding Interval_108248 chr3 122973338 122973659 + 0 NA intron (ENSMUSG00000039701.11, intron 1 of 7) protein_coding-intron (ENSMUSG00000039701.11, intron 1 of 15) 10395 ENSMUSG00000039701.11 ENSMUSG00000039701 ENSMUST00000200188 Usp53 protein_coding Interval_24792 chr11 38021125 38021300 + 0 NA Intergenic Intergenic 16051 ENSMUSG00000093184.1 ENSMUSG00000093184 ENSMUST00000175443 Gm25693 miRNA Interval_161600 chr8 121489587 121490488 + 0 NA intron (ENSMUSG00000092329.1, intron 1 of 15) protein_coding-intron (ENSMUSG00000092329.1, intron 1 of 15) 51832 ENSMUSG00000031809.10 ENSMUSG00000031809 ENSMUST00000182460 1700018B08Rik protein_coding Interval_145926 chr7 42042357 42042599 + 0 NA exon (ENSMUSG00000092032.2, exon 5 of 6) protein_coding-exon (ENSMUSG00000092032.2, exon 5 of 6) 7734 ENSMUSG00000083623.1 ENSMUSG00000083623 ENSMUST00000121359 Gm7224 unprocessed_pseudogene Interval_32768 chr11 110435702 110436016 + 0 NA intron (ENSMUSG00000020623.11, intron 1 of 11) protein_coding-intron (ENSMUSG00000020623.11, intron 1 of 11) -41518 ENSMUSG00000020623.11 ENSMUSG00000020623 ENSMUST00000133920 Map2k6 protein_coding Interval_12291 chr1 191432169 191433152 + 0 NA Intergenic Intergenic 24994 ENSMUSG00000103433.1 ENSMUSG00000103433 ENSMUST00000194903 Gm2272 processed_pseudogene Interval_131064 chr5 134887853 134888107 + 0 NA Intergenic Intergenic 18753 ENSMUSG00000040576.8 ENSMUSG00000040576 ENSMUST00000047305 Tmem270 protein_coding Interval_62599 chr15 95230963 95231133 + 0 NA intron (ENSMUSG00000022454.17, intron 18 of 20) protein_coding-intron (ENSMUSG00000022454.17, intron 19 of 20) -68654 ENSMUSG00000100603.6 ENSMUSG00000100603 ENSMUST00000185302 1700129L04Rik sense_intronic Interval_25119 chr11 44282658 44282876 + 0 NA Intergenic Intergenic -15558 ENSMUSG00000086738.1 ENSMUSG00000086738 ENSMUST00000145584 Gm12154 lincRNA Interval_100012 chr2 166488566 166489708 + 0 NA Intergenic Intergenic 20037 ENSMUSG00000085682.2 ENSMUSG00000085682 ENSMUST00000123480 Gm14267 transcribed_processed_pseudogene Interval_62296 chr15 89529944 89531082 + 0 NA promoter-TSS (ENSMUSG00000022623.17) protein_coding-promoter-TSS (ENSMUSG00000022623.17) -6836 ENSMUSG00000086602.1 ENSMUSG00000086602 ENSMUST00000155610 Gm15609 lincRNA Interval_9932 chr1 164201783 164202119 + 0 NA intron (ENSMUSG00000026579.8, intron 16 of 24) protein_coding-intron (ENSMUSG00000026579.8, intron 16 of 24) 35372 ENSMUSG00000089790.1 ENSMUSG00000089790 ENSMUST00000162889 Gm16588 processed_pseudogene Interval_38090 chr12 75595348 75596902 + 0 NA promoter-TSS (ENSMUSG00000021051.10) protein_coding-promoter-TSS (ENSMUSG00000021051.10) 120 ENSMUSG00000021051.10 ENSMUSG00000021051 ENSMUST00000218930 Ppp2r5e protein_coding Interval_120188 chr4 143870107 143870306 + 0 NA Intergenic Intergenic 23699 ENSMUSG00000029451.14 ENSMUSG00000029451 ENSMUST00000105768 Gm13103 protein_coding Interval_69463 chr16 93711102 93712472 + 0 NA promoter-TSS (ENSMUSG00000022946.10) protein_coding-promoter-TSS (ENSMUSG00000022946.10) 28528 ENSMUSG00000022947.8 ENSMUSG00000022947 ENSMUST00000231302 Cbr3 protein_coding Interval_66157 chr16 32005487 32006052 + 0 NA Intergenic Intergenic -2482 ENSMUSG00000022772.12 ENSMUSG00000022772 ENSMUST00000144320 Senp5 protein_coding Interval_169981 chr9 103394580 103394850 + 0 NA Intergenic Intergenic -14454 ENSMUSG00000101419.1 ENSMUSG00000101419 ENSMUST00000188687 Gm29600 processed_pseudogene Interval_64346 chr16 10664074 10664423 + 0 NA intron (ENSMUSG00000068663.14, intron 18 of 22) protein_coding-intron (ENSMUSG00000068663.14, intron 18 of 20) 19291 ENSMUSG00000087384.1 ENSMUSG00000087384 ENSMUST00000126849 Gm15558 antisense Interval_33062 chr11 114052233 114052466 + 0 NA intron (ENSMUSG00000041592.16, intron 1 of 11) protein_coding-intron (ENSMUSG00000041592.16, intron 1 of 44) -39057 ENSMUSG00000086760.1 ENSMUSG00000086760 ENSMUST00000129365 1700025D23Rik lincRNA Interval_139478 chr6 100432820 100434093 + 0 NA Intergenic Intergenic 61358 ENSMUSG00000087929.1 ENSMUSG00000087929 ENSMUST00000157304 Gm23234 snoRNA Interval_43125 chr13 24472614 24473160 + 0 NA exon (ENSMUSG00000016756.17, exon 17 of 17) protein_coding-exon (ENSMUSG00000016756.17, exon 17 of 17) 13877 ENSMUSG00000089413.1 ENSMUSG00000089413 ENSMUST00000158788 Gm22013 snRNA Interval_105227 chr3 84002399 84003461 + 0 NA intron (ENSMUSG00000033767.14, intron 3 of 33) protein_coding-intron (ENSMUSG00000033767.14, intron 3 of 33) 60522 ENSMUSG00000103261.1 ENSMUSG00000103261 ENSMUST00000192340 Gm36981 TEC Interval_89162 chr2 17729879 17731874 + 0 NA exon (ENSMUSG00000053702.16, exon 1 of 7) protein_coding-exon (ENSMUSG00000053702.16, exon 1 of 7) 67108 ENSMUSG00000081851.1 ENSMUSG00000081851 ENSMUST00000120245 Gm13323 processed_pseudogene Interval_70994 chr17 17052048 17052657 + 0 NA Intergenic Intergenic -11761 ENSMUSG00000096696.1 ENSMUSG00000096696 ENSMUST00000127027 Zfp960 protein_coding Interval_15458 chr10 47021733 47022224 + 0 NA intron (ENSMUSG00000110843.1, intron 2 of 2) lincRNA-intron (ENSMUSG00000110843.1, intron 2 of 2) -2269 ENSMUSG00000111419.1 ENSMUSG00000111419 ENSMUST00000214033 Gm47568 lincRNA Interval_142407 chr6 141693535 141694138 + 0 NA Intergenic Intergenic 21255 ENSMUSG00000088865.1 ENSMUSG00000088865 ENSMUST00000158240 Gm23069 misc_RNA Interval_116951 chr4 118408824 118409863 + 0 NA promoter-TSS (ENSMUSG00000006392.16) protein_coding-promoter-TSS (ENSMUSG00000006392.16) -1005 ENSMUSG00000006392.16 ENSMUSG00000006392 ENSMUST00000135201 Med8 protein_coding Interval_41264 chr12 112257747 112258010 + 0 NA Intergenic Intergenic -52725 ENSMUSG00000113282.1 ENSMUSG00000113282 ENSMUST00000220716 Gm20368 processed_pseudogene Interval_143731 chr7 15961833 15963140 + 0 NA intron (ENSMUSG00000074364.6, intron 2 of 2) protein_coding-intron (ENSMUSG00000074364.6, intron 3 of 5) 4989 ENSMUSG00000074364.6 ENSMUSG00000074364 ENSMUST00000144956 Ehd2 protein_coding Interval_89061 chr2 15156204 15157128 + 0 NA Intergenic Intergenic 29066 ENSMUSG00000083860.2 ENSMUSG00000083860 ENSMUST00000118938 Gm13313 processed_pseudogene Interval_3420 chr1 58188239 58189119 + 0 NA intron (ENSMUSG00000064294.12, intron 33 of 34) protein_coding-intron (ENSMUSG00000064294.12, intron 33 of 34) -22539 ENSMUSG00000038242.12 ENSMUSG00000038242 ENSMUST00000161926 Aox4 protein_coding Interval_79718 chr18 34703896 34704543 + 0 NA intron (ENSMUSG00000024366.8, intron 3 of 7) protein_coding-intron (ENSMUSG00000024366.8, intron 3 of 7) 16168 ENSMUSG00000024366.8 ENSMUSG00000024366 ENSMUST00000025224 Gfra3 protein_coding Interval_80661 chr18 45853154 45853383 + 0 NA intron (ENSMUSG00000098284.8, intron 2 of 3) antisense-intron (ENSMUSG00000098284.8, intron 2 of 3) 4104 ENSMUSG00000098284.8 ENSMUSG00000098284 ENSMUST00000238177 A330093E20Rik antisense Interval_57490 chr15 11753298 11753644 + 0 NA Intergenic Intergenic -49768 ENSMUSG00000115585.1 ENSMUSG00000115585 ENSMUST00000228108 Gm41271 processed_transcript Interval_174287 chrX 143518299 143519268 + 0 NA promoter-TSS (ENSMUSG00000031284.16) protein_coding-promoter-TSS (ENSMUSG00000031284.16) 104885 ENSMUSG00000088047.1 ENSMUSG00000088047 ENSMUST00000157422 Gm23325 snoRNA Interval_164525 chr9 37745501 37745860 + 0 NA promoter-TSS (ENSMUSG00000063350.6) protein_coding-promoter-TSS (ENSMUSG00000063350.6) 574 ENSMUSG00000063350.6 ENSMUSG00000063350 ENSMUST00000115004 Olfr874 protein_coding Interval_130195 chr5 124861561 124863754 + 0 NA promoter-TSS (ENSMUSG00000037979.13) protein_coding-promoter-TSS (ENSMUSG00000037979.13) -11074 ENSMUSG00000037979.13 ENSMUSG00000037979 ENSMUST00000143268 Ccdc92 protein_coding Interval_20947 chr10 122631623 122632191 + 0 NA Intergenic Intergenic -16432 ENSMUSG00000098522.1 ENSMUSG00000098522 ENSMUST00000184477 Mir6412 miRNA Interval_113209 chr4 49984752 49985432 + 0 NA Intergenic Intergenic 66311 ENSMUSG00000081120.1 ENSMUSG00000081120 ENSMUST00000119387 Gm12458 processed_pseudogene Interval_123263 chr5 30982191 30982726 + 0 NA Intergenic Intergenic 13796 ENSMUSG00000006642.3 ENSMUSG00000006642 ENSMUST00000006818 Tcf23 protein_coding Interval_14619 chr10 37090310 37090702 + 0 NA Intergenic Intergenic -39238 ENSMUSG00000103299.1 ENSMUSG00000103299 ENSMUST00000192030 Gm38231 TEC Interval_8327 chr1 137362583 137362815 + 0 NA Intergenic Intergenic 4548 ENSMUSG00000088164.1 ENSMUSG00000088164 ENSMUST00000157539 Gm23534 snoRNA Interval_127088 chr5 100206744 100207485 + 0 NA Intergenic Intergenic -3594 ENSMUSG00000100157.6 ENSMUSG00000100157 ENSMUST00000188902 2310034O05Rik lincRNA Interval_92927 chr2 68740639 68740925 + 0 NA intron (ENSMUSG00000079324.11, intron 25 of 28) protein_coding-intron (ENSMUSG00000079324.11, intron 24 of 27) 24491 ENSMUSG00000079324.11 ENSMUSG00000079324 ENSMUST00000135023 4932414N04Rik protein_coding Interval_115230 chr4 94658292 94658489 + 0 NA intron (ENSMUSG00000028576.12, intron 10 of 13) protein_coding-intron (ENSMUSG00000028576.12, intron 10 of 19) -6767 ENSMUSG00000077921.1 ENSMUSG00000077921 ENSMUST00000104728 Mir872 miRNA Interval_18498 chr10 86750269 86750506 + 0 NA intron (ENSMUSG00000044937.15, intron 2 of 7) protein_coding-intron (ENSMUSG00000044937.15, intron 10 of 15) 13501 ENSMUSG00000044937.15 ENSMUSG00000044937 ENSMUST00000219070 Ttc41 protein_coding Interval_1645 chr1 30759889 30761184 + 0 NA Intergenic Intergenic -9151 ENSMUSG00000100261.1 ENSMUSG00000100261 ENSMUST00000188572 Gm6473 unprocessed_pseudogene Interval_163508 chr9 21782005 21782786 + 0 NA intron (ENSMUSG00000032194.9, intron 3 of 10) protein_coding-intron (ENSMUSG00000032194.9, intron 3 of 11) 16108 ENSMUSG00000032194.9 ENSMUSG00000032194 ENSMUST00000213691 Kank2 protein_coding Interval_16727 chr10 67226760 67227034 + 0 NA exon (ENSMUSG00000037876.17, exon 10 of 26) protein_coding-exon (ENSMUSG00000037876.17, exon 10 of 26) 9064 ENSMUSG00000089498.1 ENSMUSG00000089498 ENSMUST00000158873 Gm26359 snRNA Interval_15594 chr10 52049903 52050114 + 0 NA intron (ENSMUSG00000019893.13, intron 40 of 40) protein_coding-intron (ENSMUSG00000019893.13, intron 43 of 43) 17757 ENSMUSG00000092914.1 ENSMUSG00000092914 ENSMUST00000175173 Gm24084 miRNA Interval_15334 chr10 44684433 44686871 + 0 NA intron (ENSMUSG00000111535.1, intron 2 of 3) lincRNA-intron (ENSMUSG00000111535.1, intron 2 of 3) -11528 ENSMUSG00000111641.1 ENSMUSG00000111641 ENSMUST00000217069 Gm47388 TEC Interval_141872 chr6 135041914 135042532 + 0 NA Intergenic Intergenic -23428 ENSMUSG00000046733.7 ENSMUSG00000046733 ENSMUST00000050104 Gprc5a protein_coding Interval_164746 chr9 41021504 41022142 + 0 NA intron (ENSMUSG00000032020.15, intron 11 of 13) protein_coding-intron (ENSMUSG00000032020.15, intron 11 of 13) -17237 ENSMUSG00000032021.14 ENSMUSG00000032021 ENSMUST00000034519 Crtam protein_coding Interval_23498 chr11 22964705 22966178 + 0 NA intron (ENSMUSG00000098650.1, intron 1 of 2) protein_coding-intron (ENSMUSG00000051355.18, intron 2 of 3) 7418 ENSMUSG00000051355.18 ENSMUSG00000051355 ENSMUST00000093270 Commd1 protein_coding Interval_153979 chr8 11605981 11606270 + 0 NA Intergenic Intergenic 18501 ENSMUSG00000031508.14 ENSMUSG00000031508 ENSMUST00000210876 Ankrd10 protein_coding Interval_85966 chr19 34270241 34270883 + 0 NA Intergenic Intergenic 13975 ENSMUSG00000118066.1 ENSMUSG00000118066 ENSMUST00000236383 Gm50239 processed_pseudogene Interval_142005 chr6 136497925 136498306 + 0 NA Intergenic Intergenic -8052 ENSMUSG00000030213.12 ENSMUSG00000030213 ENSMUST00000185332 Atf7ip protein_coding Interval_103205 chr3 36677078 36677475 + 0 NA intron (ENSMUSG00000027716.13, intron 1 of 1) protein_coding-intron (ENSMUSG00000027716.13, intron 1 of 11) 12891 ENSMUSG00000027716.13 ENSMUSG00000027716 ENSMUST00000146475 Trpc3 protein_coding Interval_28456 chr11 76026772 76028406 + 0 NA exon (ENSMUSG00000020846.6, exon 1 of 3) protein_coding-exon (ENSMUSG00000020846.6, exon 1 of 3) 193 ENSMUSG00000020846.6 ENSMUSG00000020846 ENSMUST00000021207 Rflnb protein_coding Interval_149316 chr7 97408074 97408593 + 0 NA TTS (ENSMUSG00000030647.8) protein_coding-TTS (ENSMUSG00000030647.8) 2193 ENSMUSG00000083974.1 ENSMUSG00000083974 ENSMUST00000120511 Gm16053 processed_pseudogene Interval_16522 chr10 63344506 63345070 + 0 NA intron (ENSMUSG00000020063.16, intron 3 of 13) protein_coding-intron (ENSMUSG00000020063.16, intron 3 of 13) -5756 ENSMUSG00000020063.16 ENSMUSG00000020063 ENSMUST00000131371 Sirt1 protein_coding Interval_102201 chr3 19418109 19418464 + 0 NA Intergenic Intergenic 87513 ENSMUSG00000089149.1 ENSMUSG00000089149 ENSMUST00000158524 Gm22282 misc_RNA Interval_13471 chr10 18482486 18483032 + 0 NA intron (ENSMUSG00000039835.16, intron 2 of 6) protein_coding-intron (ENSMUSG00000039835.16, intron 2 of 6) 63305 ENSMUSG00000019853.6 ENSMUSG00000019853 ENSMUST00000214548 Hebp2 protein_coding Interval_75312 chr17 65827980 65828336 + 0 NA promoter-TSS (ENSMUSG00000061950.17) protein_coding-promoter-TSS (ENSMUSG00000061950.17) -790 ENSMUSG00000061950.17 ENSMUSG00000061950 ENSMUST00000162703 Ppp4r1 protein_coding Interval_161001 chr8 116800837 116801717 + 0 NA Intergenic Intergenic -35798 ENSMUSG00000074072.2 ENSMUSG00000074072 ENSMUST00000098379 Gm10620 pseudogene Interval_133752 chr6 11352542 11352759 + 0 NA Intergenic Intergenic -378272 ENSMUSG00000107948.2 ENSMUSG00000107948 ENSMUST00000205141 AA545190 lincRNA Interval_36092 chr12 35534131 35535550 + 0 NA promoter-TSS (ENSMUSG00000019256.17) protein_coding-promoter-TSS (ENSMUSG00000019256.17) 419 ENSMUSG00000113741.1 ENSMUSG00000113741 ENSMUST00000223092 Gm48236 lincRNA Interval_11377 chr1 181376451 181376905 + 0 NA intron (ENSMUSG00000026514.14, intron 1 of 5) protein_coding-intron (ENSMUSG00000026514.14, intron 1 of 5) -4500 ENSMUSG00000102276.1 ENSMUSG00000102276 ENSMUST00000192780 2900069G24Rik TEC Interval_154118 chr8 12871073 12871891 + 0 NA intron (ENSMUSG00000085465.1, intron 1 of 2) antisense-intron (ENSMUSG00000085465.1, intron 1 of 2) 5862 ENSMUSG00000085465.1 ENSMUSG00000085465 ENSMUST00000145372 Gm15347 antisense Interval_151309 chr7 120899735 120900543 + 0 NA intron (ENSMUSG00000035064.17, intron 5 of 5) protein_coding-intron (ENSMUSG00000035064.17, intron 17 of 17) 9434 ENSMUSG00000109337.1 ENSMUSG00000109337 ENSMUST00000207651 Gm45047 TEC Interval_142576 chr6 143465001 143465614 + 0 NA promoter-TSS (ENSMUSG00000077241.1) snoRNA-promoter-TSS (ENSMUSG00000077241.1) 90 ENSMUSG00000077241.1 ENSMUSG00000077241 ENSMUST00000104053 Gm23272 snoRNA Interval_148582 chr7 82820681 82821187 + 0 NA Intergenic Intergenic -30665 ENSMUSG00000030636.15 ENSMUSG00000030636 ENSMUST00000032872 1700010L04Rik lincRNA Interval_59690 chr15 58528015 58528568 + 0 NA intron (ENSMUSG00000037106.8, intron 1 of 40) protein_coding-intron (ENSMUSG00000037106.8, intron 1 of 40) 18243 ENSMUSG00000037106.8 ENSMUSG00000037106 ENSMUST00000159177 Fer1l6 protein_coding Interval_167642 chr9 71475182 71475402 + 0 NA Intergenic Intergenic 10613 ENSMUSG00000032199.13 ENSMUSG00000032199 ENSMUST00000233263 Polr2m protein_coding Interval_14822 chr10 40292016 40292579 + 0 NA intron (ENSMUSG00000075232.6, intron 4 of 7) protein_coding-intron (ENSMUSG00000075232.6, intron 4 of 7) 9891 ENSMUSG00000075232.6 ENSMUSG00000075232 ENSMUST00000216993 Amd1 protein_coding Interval_15775 chr10 56393732 56394409 + 0 NA intron (ENSMUSG00000050953.10, intron 1 of 2) protein_coding-intron (ENSMUSG00000050953.10, intron 1 of 2) 16621 ENSMUSG00000050953.10 ENSMUSG00000050953 ENSMUST00000220069 Gja1 protein_coding Interval_156851 chr8 61208396 61209792 + 0 NA Intergenic Intergenic -14446 ENSMUSG00000086681.1 ENSMUSG00000086681 ENSMUST00000129408 Gm16178 antisense Interval_6684 chr1 118741025 118741249 + 0 NA Intergenic Intergenic 59316 ENSMUSG00000088363.1 ENSMUSG00000088363 ENSMUST00000157738 Gm23497 snRNA Interval_88544 chr2 5970440 5970889 + 0 NA intron (ENSMUSG00000043241.14, intron 3 of 21) protein_coding-intron (ENSMUSG00000043241.14, intron 3 of 21) -58828 ENSMUSG00000025815.13 ENSMUSG00000025815 ENSMUST00000151649 Dhtkd1 protein_coding Interval_60644 chr15 75884076 75884596 + 0 NA exon (ENSMUSG00000098678.1, exon 14 of 14) protein_coding-exon (ENSMUSG00000098678.1, exon 14 of 14) 4434 ENSMUSG00000098678.1 ENSMUSG00000098678 ENSMUST00000184858 Mroh6 protein_coding Interval_74390 chr17 49867019 49867482 + 0 NA intron (ENSMUSG00000023999.14, intron 15 of 22) protein_coding-intron (ENSMUSG00000023999.14, intron 15 of 22) 28717 ENSMUSG00000090227.1 ENSMUSG00000090227 ENSMUST00000159471 Gm16554 antisense Interval_132428 chr5 144875713 144876996 + 0 NA TTS (ENSMUSG00000038780.14) protein_coding-TTS (ENSMUSG00000038780.14) 20462 ENSMUSG00000098822.1 ENSMUSG00000098822 ENSMUST00000183852 Mir7039 miRNA Interval_20543 chr10 118749185 118749786 + 0 NA Intergenic Intergenic -30057 ENSMUSG00000112535.1 ENSMUSG00000112535 ENSMUST00000219645 Gm47425 lincRNA Interval_139235 chr6 97420210 97420444 + 0 NA intron (ENSMUSG00000030064.16, intron 4 of 7) protein_coding-intron (ENSMUSG00000030064.16, intron 3 of 22) -29423 ENSMUSG00000108185.1 ENSMUSG00000108185 ENSMUST00000204326 Gm19653 processed_pseudogene Interval_109955 chr3 152151964 152152429 + 0 NA intron (ENSMUSG00000039131.15, intron 1 of 2) protein_coding-intron (ENSMUSG00000039131.15, intron 1 of 5) -1251 ENSMUSG00000084343.1 ENSMUSG00000084343 ENSMUST00000118766 Gm16198 processed_pseudogene Interval_16548 chr10 63555971 63556216 + 0 NA intron (ENSMUSG00000060843.11, intron 3 of 17) protein_coding-intron (ENSMUSG00000060843.11, intron 2 of 16) -134304 ENSMUSG00000048185.5 ENSMUSG00000048185 ENSMUST00000054760 Gm7075 protein_coding Interval_91501 chr2 39613731 39614804 + 0 NA Intergenic Intergenic 39637 ENSMUSG00000082015.1 ENSMUSG00000082015 ENSMUST00000120896 Gm13452 processed_pseudogene Interval_153044 chr7 141037749 141038728 + 0 NA Intergenic Intergenic 9107 ENSMUSG00000091441.1 ENSMUSG00000091441 ENSMUST00000170892 Gm17387 protein_coding Interval_10440 chr1 170883960 170885951 + 0 NA promoter-TSS (ENSMUSG00000026659.13) protein_coding-promoter-TSS (ENSMUSG00000026659.13) 49 ENSMUSG00000026659.13 ENSMUSG00000026659 ENSMUST00000172042 Dusp12 protein_coding Interval_42190 chr13 9701736 9702034 + 0 NA intron (ENSMUSG00000021156.17, intron 2 of 11) protein_coding-intron (ENSMUSG00000021156.17, intron 3 of 13) 17592 ENSMUSG00000114138.1 ENSMUSG00000114138 ENSMUST00000222421 Gm36423 antisense Interval_22371 chr11 9233822 9234530 + 0 NA intron (ENSMUSG00000004668.14, intron 3 of 5) protein_coding-intron (ENSMUSG00000004668.14, intron 3 of 61) 40725 ENSMUSG00000004668.14 ENSMUSG00000004668 ENSMUST00000151522 Abca13 protein_coding Interval_174342 chrX 145829397 145829923 + 0 NA Intergenic Intergenic -3657 ENSMUSG00000080915.1 ENSMUSG00000080915 ENSMUST00000120604 Gm6446 processed_pseudogene Interval_80655 chr18 45516428 45516684 + 0 NA intron (ENSMUSG00000118074.1, intron 1 of 3) protein_coding-intron (ENSMUSG00000054477.16, intron 2 of 10) 43574 ENSMUSG00000118074.1 ENSMUSG00000118074 ENSMUST00000235309 Gm31907 transcribed_processed_pseudogene Interval_125898 chr5 75518000 75518943 + 0 NA Intergenic Intergenic 42679 ENSMUSG00000089078.1 ENSMUSG00000089078 ENSMUST00000158453 Gm24502 snRNA Interval_167766 chr9 72617875 72618906 + 0 NA TTS (ENSMUSG00000098573.1) antisense-TTS (ENSMUSG00000098573.1) 1130 ENSMUSG00000098573.1 ENSMUSG00000098573 ENSMUST00000184373 Gm27232 antisense Interval_17244 chr10 75245985 75246523 + 0 NA exon (ENSMUSG00000033444.14, exon 4 of 16) protein_coding-exon (ENSMUSG00000033444.14, exon 4 of 16) -14713 ENSMUSG00000033444.14 ENSMUSG00000033444 ENSMUST00000218644 Specc1l protein_coding Interval_41655 chr12 117436529 117437848 + 0 NA Intergenic Intergenic -100176 ENSMUSG00000101930.1 ENSMUSG00000101930 ENSMUST00000186454 Gm5441 antisense Interval_157431 chr8 70315558 70317519 + 0 NA intron (ENSMUSG00000087408.10, intron 1 of 7) protein_coding-intron (ENSMUSG00000087408.10, intron 1 of 7) 763 ENSMUSG00000087408.10 ENSMUSG00000087408 ENSMUST00000136257 Cers1 protein_coding Interval_98517 chr2 152925170 152926097 + 0 NA Intergenic Intergenic 7575 ENSMUSG00000074676.2 ENSMUSG00000074676 ENSMUST00000099200 Foxs1 protein_coding Interval_61957 chr15 85480135 85481353 + 0 NA Intergenic Intergenic 22483 ENSMUSG00000096607.1 ENSMUSG00000096607 ENSMUST00000178942 7530416G11Rik protein_coding Interval_89454 chr2 20755746 20756062 + 0 NA intron (ENSMUSG00000036617.17, intron 2 of 7) protein_coding-intron (ENSMUSG00000036617.17, intron 7 of 18) -42670 ENSMUSG00000086418.1 ENSMUSG00000086418 ENSMUST00000137186 Gm13362 antisense Interval_136176 chr6 51745743 51746373 + 0 NA Intergenic Intergenic -34977 ENSMUSG00000108145.1 ENSMUSG00000108145 ENSMUST00000203781 Gm38811 lincRNA Interval_26397 chr11 57627039 57627520 + 0 NA exon (ENSMUSG00000085719.1, exon 3 of 4) antisense-exon (ENSMUSG00000085719.1, exon 3 of 4) -18186 ENSMUSG00000020520.14 ENSMUSG00000020520 ENSMUST00000108846 Galnt10 protein_coding Interval_172158 chrX 8066423 8066739 + 0 NA TTS (ENSMUSG00000039231.18) protein_coding-TTS (ENSMUSG00000039231.18) 8040 ENSMUSG00000039231.18 ENSMUSG00000039231 ENSMUST00000127617 Suv39h1 protein_coding Interval_56971 chr14 124410589 124411353 + 0 NA intron (ENSMUSG00000025551.13, intron 1 of 4) protein_coding-intron (ENSMUSG00000025551.13, intron 1 of 4) 12280 ENSMUSG00000115472.1 ENSMUSG00000115472 ENSMUST00000228023 Gm49070 processed_pseudogene Interval_41940 chr13 4855801 4856133 + 0 NA Intergenic Intergenic 84316 ENSMUSG00000053499.4 ENSMUSG00000053499 ENSMUST00000065956 Gm5444 lincRNA Interval_21944 chr11 5352606 5352814 + 0 NA intron (ENSMUSG00000041961.14, intron 1 of 3) protein_coding-intron (ENSMUSG00000041961.14, intron 1 of 8) 29030 ENSMUSG00000041961.14 ENSMUSG00000041961 ENSMUST00000143746 Znrf3 protein_coding Interval_26594 chr11 59093301 59094664 + 0 NA intron (ENSMUSG00000061462.18, intron 17 of 114) protein_coding-intron (ENSMUSG00000061462.18, intron 17 of 89) 42393 ENSMUSG00000061462.18 ENSMUSG00000061462 ENSMUST00000133040 Obscn protein_coding Interval_126498 chr5 89185407 89185689 + 0 NA intron (ENSMUSG00000060961.16, intron 17 of 25) protein_coding-intron (ENSMUSG00000060961.16, intron 16 of 24) 250080 ENSMUSG00000035540.12 ENSMUSG00000035540 ENSMUST00000200534 Gc protein_coding Interval_96620 chr2 126579034 126579827 + 0 NA intron (ENSMUSG00000027359.16, intron 7 of 9) protein_coding-intron (ENSMUSG00000027359.16, intron 7 of 9) 14670 ENSMUSG00000027359.16 ENSMUSG00000027359 ENSMUST00000150947 Slc27a2 protein_coding Interval_100689 chr2 171628302 171628721 + 0 NA Intergenic Intergenic -322080 ENSMUSG00000088505.1 ENSMUSG00000088505 ENSMUST00000157880 Gm26489 scaRNA Interval_112263 chr4 39330352 39330526 + 0 NA Intergenic Intergenic 34976 ENSMUSG00000077738.1 ENSMUSG00000077738 ENSMUST00000104550 Gm23607 snoRNA Interval_127989 chr5 110109949 110110502 + 0 NA promoter-TSS (ENSMUSG00000023284.15) protein_coding-promoter-TSS (ENSMUSG00000023284.15) -126 ENSMUSG00000023284.15 ENSMUSG00000023284 ENSMUST00000086686 Zfp605 protein_coding Interval_166285 chr9 58051186 58051867 + 0 NA intron (ENSMUSG00000037716.15, intron 11 of 19) protein_coding-intron (ENSMUSG00000037716.15, intron 11 of 18) 19252 ENSMUSG00000086624.1 ENSMUSG00000086624 ENSMUST00000153106 Gm16130 antisense Interval_145734 chr7 37922998 37923230 + 0 NA Intergenic Intergenic -98767 ENSMUSG00000064591.1 ENSMUSG00000064591 ENSMUST00000082657 Gm22302 snRNA Interval_81503 chr18 61223979 61224685 + 0 NA intron (ENSMUSG00000024575.16, intron 1 of 21) protein_coding-intron (ENSMUSG00000024575.16, intron 1 of 21) -12975 ENSMUSG00000034320.14 ENSMUSG00000034320 ENSMUST00000181997 Slc26a2 protein_coding Interval_164160 chr9 32057441 32059274 + 0 NA Intergenic Intergenic -8814 ENSMUSG00000106368.1 ENSMUSG00000106368 ENSMUST00000175161 Gm44453 miRNA Interval_68308 chr16 72976842 72977544 + 0 NA exon (ENSMUSG00000022883.11, exon 1 of 2) protein_coding-exon (ENSMUSG00000022883.11, exon 1 of 2) 844 ENSMUSG00000022883.11 ENSMUSG00000022883 ENSMUST00000232432 Robo1 protein_coding Interval_133144 chr5 150160819 150161339 + 0 NA intron (ENSMUSG00000056602.12, intron 1 of 6) protein_coding-intron (ENSMUSG00000056602.12, intron 1 of 4) -78284 ENSMUSG00000107384.1 ENSMUSG00000107384 ENSMUST00000202037 Gm42557 antisense Interval_12886 chr10 7281201 7281906 + 0 NA Intergenic Intergenic 109230 ENSMUSG00000112057.1 ENSMUSG00000112057 ENSMUST00000220179 Gm21321 processed_pseudogene Interval_116416 chr4 111663598 111664440 + 0 NA exon (ENSMUSG00000061298.14, exon 13 of 13) protein_coding-exon (ENSMUSG00000061298.14, exon 13 of 13) -56044 ENSMUSG00000034401.16 ENSMUSG00000034401 ENSMUST00000132802 Spata6 protein_coding Interval_146919 chr7 55859864 55860379 + 0 NA intron (ENSMUSG00000030447.15, intron 2 of 31) protein_coding-intron (ENSMUSG00000030447.15, intron 1 of 30) -11738 ENSMUSG00000030447.15 ENSMUSG00000030447 ENSMUST00000205656 Cyfip1 protein_coding Interval_13148 chr10 12511737 12512123 + 0 NA intron (ENSMUSG00000019820.11, intron 3 of 24) protein_coding-intron (ENSMUSG00000019820.11, intron 52 of 73) -90334 ENSMUSG00000112816.1 ENSMUSG00000112816 ENSMUST00000220361 Gm48798 TEC Interval_75186 chr17 64486284 64486544 + 0 NA Intergenic Intergenic 45608 ENSMUSG00000098984.1 ENSMUSG00000098984 ENSMUST00000185032 Mir6420 miRNA Interval_152424 chr7 132978120 132978405 + 0 NA intron (ENSMUSG00000030967.15, intron 6 of 9) protein_coding-intron (ENSMUSG00000030967.15, intron 5 of 8) 5290 ENSMUSG00000085663.1 ENSMUSG00000085663 ENSMUST00000131085 Gm15718 antisense Interval_76186 chr17 76370138 76370456 + 0 NA Intergenic Intergenic -31102 ENSMUSG00000117598.1 ENSMUSG00000117598 ENSMUST00000234248 Gm50028 lincRNA Interval_137184 chr6 69384953 69385140 + 0 NA Intergenic Intergenic -6574 ENSMUSG00000076550.3 ENSMUSG00000076550 ENSMUST00000196595 Igkv4-63 IG_V_gene Interval_13396 chr10 17760102 17760316 + 0 NA Intergenic Intergenic 35119 ENSMUSG00000093672.2 ENSMUSG00000093672 ENSMUST00000176132 Gm20655 antisense Interval_55269 chr14 79835698 79836716 + 0 NA promoter-TSS (ENSMUSG00000097927.2) lincRNA-promoter-TSS (ENSMUSG00000097927.2) 32969 ENSMUSG00000095959.2 ENSMUSG00000095959 ENSMUST00000179430 Gm10845 lincRNA Interval_46449 chr13 65351556 65352643 + 0 NA Intergenic Intergenic -3502 ENSMUSG00000113406.1 ENSMUSG00000113406 ENSMUST00000220595 Gm7762 lincRNA Interval_48770 chr13 102982320 102982912 + 0 NA intron (ENSMUSG00000034751.17, intron 3 of 27) protein_coding-intron (ENSMUSG00000034751.17, intron 4 of 4) 114229 ENSMUSG00000034751.17 ENSMUSG00000034751 ENSMUST00000187024 Mast4 protein_coding Interval_24691 chr11 35935224 35936051 + 0 NA intron (ENSMUSG00000018849.6, intron 1 of 22) protein_coding-intron (ENSMUSG00000018849.6, intron 1 of 22) -60417 ENSMUSG00000081571.1 ENSMUSG00000081571 ENSMUST00000117261 Gm12125 processed_pseudogene Interval_61664 chr15 83270996 83271877 + 0 NA Intergenic Intergenic -13339 ENSMUSG00000116416.1 ENSMUSG00000116416 ENSMUST00000230161 Gm32886 processed_pseudogene Interval_159199 chr8 91602148 91602334 + 0 NA intron (ENSMUSG00000055932.15, intron 5 of 5) protein_coding-intron (ENSMUSG00000055932.15, intron 8 of 8) 22953 ENSMUSG00000110068.1 ENSMUSG00000110068 ENSMUST00000210685 Gm45294 TEC Interval_99207 chr2 158064712 158065201 + 0 NA intron (ENSMUSG00000027651.16, intron 5 of 5) protein_coding-intron (ENSMUSG00000027651.16, intron 6 of 6) 26841 ENSMUSG00000100860.1 ENSMUSG00000100860 ENSMUST00000186977 2010009K17Rik antisense Interval_101364 chr2 180791720 180791930 + 0 NA Intergenic Intergenic -14925 ENSMUSG00000045493.4 ENSMUSG00000045493 ENSMUST00000108878 Bhlhe23 protein_coding Interval_92907 chr2 68358422 68358652 + 0 NA TTS (ENSMUSG00000027030.15) protein_coding-TTS (ENSMUSG00000027030.15) 28144 ENSMUSG00000027030.15 ENSMUSG00000027030 ENSMUST00000149581 Stk39 protein_coding Interval_120008 chr4 141347468 141348733 + 0 NA intron (ENSMUSG00000085836.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000085836.1, intron 1 of 1) 286 ENSMUSG00000085836.1 ENSMUSG00000085836 ENSMUST00000124848 Gm13074 lincRNA Interval_45681 chr13 56861377 56862999 + 0 NA intron (ENSMUSG00000021541.14, intron 2 of 10) protein_coding-intron (ENSMUSG00000021541.14, intron 2 of 11) 33549 ENSMUSG00000021541.14 ENSMUSG00000021541 ENSMUST00000173817 Trpc7 protein_coding Interval_80581 chr18 44413528 44414151 + 0 NA intron (ENSMUSG00000024472.9, intron 9 of 10) protein_coding-intron (ENSMUSG00000024472.9, intron 9 of 10) 33337 ENSMUSG00000024472.9 ENSMUSG00000024472 ENSMUST00000025350 Dcp2 protein_coding Interval_82537 chr18 75004317 75006342 + 0 NA promoter-TSS (ENSMUSG00000036299.5) protein_coding-promoter-TSS (ENSMUSG00000036299.5) 275 ENSMUSG00000118144.1 ENSMUSG00000118144 ENSMUST00000237271 Gm50313 processed_pseudogene Interval_61901 chr15 85036424 85037656 + 0 NA promoter-TSS (ENSMUSG00000022434.8) protein_coding-promoter-TSS (ENSMUSG00000022434.8) -147 ENSMUSG00000022434.8 ENSMUSG00000022434 ENSMUST00000229691 Fam118a protein_coding Interval_123106 chr5 29743422 29743915 + 0 NA intron (ENSMUSG00000029131.14, intron 1 of 1) protein_coding-intron (ENSMUSG00000029131.14, intron 1 of 9) 7679 ENSMUSG00000029131.14 ENSMUSG00000029131 ENSMUST00000139126 Dnajb6 protein_coding Interval_91276 chr2 37324920 37325173 + 0 NA Intergenic Intergenic -1469 ENSMUSG00000049018.8 ENSMUSG00000049018 ENSMUST00000053990 Olfr368 protein_coding Interval_141865 chr6 134993977 134994229 + 0 NA Intergenic Intergenic 12385 ENSMUSG00000090698.2 ENSMUSG00000090698 ENSMUST00000167323 Apold1 protein_coding Interval_60221 chr15 68362149 68363934 + 0 NA exon (ENSMUSG00000093387.1, exon 1 of 3) lincRNA-exon (ENSMUSG00000093387.1, exon 1 of 3) 135 ENSMUSG00000093387.1 ENSMUSG00000093387 ENSMUST00000175699 Gm20732 lincRNA Interval_51096 chr14 22679259 22679614 + 0 NA intron (ENSMUSG00000063458.13, intron 3 of 3) protein_coding-intron (ENSMUSG00000063458.13, intron 5 of 6) 82923 ENSMUSG00000063458.13 ENSMUSG00000063458 ENSMUST00000226003 Lrmda protein_coding Interval_15273 chr10 44002711 44004713 + 0 NA promoter-TSS (ENSMUSG00000075162.3) pseudogene-promoter-TSS (ENSMUSG00000075162.3) -442 ENSMUSG00000075162.3 ENSMUSG00000075162 ENSMUST00000099864 Gm10812 pseudogene Interval_93736 chr2 76338206 76339195 + 0 NA promoter-TSS (ENSMUSG00000075270.11) protein_coding-promoter-TSS (ENSMUSG00000075270.11) 20218 ENSMUSG00000105164.1 ENSMUSG00000105164 ENSMUST00000196553 Gm44337 miRNA Interval_136212 chr6 52076494 52077683 + 0 NA Intergenic Intergenic -25906 ENSMUSG00000085412.7 ENSMUSG00000085412 ENSMUST00000155758 Halr1 lincRNA Interval_138863 chr6 92738029 92738260 + 0 NA Intergenic Intergenic -89488 ENSMUSG00000048636.7 ENSMUSG00000048636 ENSMUST00000133858 A730049H05Rik protein_coding Interval_9286 chr1 155833783 155834043 + 0 NA intron (ENSMUSG00000102558.1, intron 1 of 1) antisense-intron (ENSMUSG00000102558.1, intron 1 of 1) 15419 ENSMUSG00000102558.1 ENSMUSG00000102558 ENSMUST00000195048 Gm37571 antisense Interval_58334 chr15 32574921 32575177 + 0 NA intron (ENSMUSG00000022231.10, intron 11 of 12) protein_coding-intron (ENSMUSG00000022231.10, intron 11 of 22) 48456 ENSMUSG00000115063.1 ENSMUSG00000115063 ENSMUST00000227807 4930465K09Rik antisense Interval_119144 chr4 135834071 135834528 + 0 NA Intergenic Intergenic -19379 ENSMUSG00000081672.1 ENSMUSG00000081672 ENSMUST00000120937 Gm13000 processed_pseudogene Interval_154328 chr8 14605494 14605935 + 0 NA intron (ENSMUSG00000047495.15, intron 3 of 14) protein_coding-intron (ENSMUSG00000047495.15, intron 3 of 14) 141713 ENSMUSG00000084945.1 ENSMUSG00000084945 ENSMUST00000155211 C030037F17Rik antisense Interval_168512 chr9 82880198 82880996 + 0 NA intron (ENSMUSG00000032253.13, intron 11 of 16) protein_coding-intron (ENSMUSG00000032253.13, intron 34 of 39) 20516 ENSMUSG00000032253.13 ENSMUSG00000032253 ENSMUST00000190838 Phip protein_coding Interval_157293 chr8 69088247 69089955 + 0 NA exon (ENSMUSG00000036330.12, exon 1 of 17) protein_coding-exon (ENSMUSG00000036330.12, exon 1 of 17) 134 ENSMUSG00000036330.12 ENSMUSG00000036330 ENSMUST00000142710 Slc18a1 protein_coding Interval_22820 chr11 16345143 16346053 + 0 NA intron (ENSMUSG00000048834.16, intron 4 of 6) protein_coding-intron (ENSMUSG00000048834.16, intron 4 of 6) 87535 ENSMUSG00000048834.16 ENSMUSG00000048834 ENSMUST00000207256 Vstm2a protein_coding Interval_151568 chr7 123871411 123872236 + 0 NA Intergenic Intergenic 70386 ENSMUSG00000084484.1 ENSMUSG00000084484 ENSMUST00000122535 Gm23788 snRNA Interval_164897 chr9 42892663 42893270 + 0 NA intron (ENSMUSG00000032017.14, intron 1 of 20) protein_coding-intron (ENSMUSG00000032017.14, intron 1 of 20) -30837 ENSMUSG00000076355.2 ENSMUSG00000076355 ENSMUST00000102400 Gm27509 miRNA Interval_28379 chr11 75493709 75494679 + 0 NA TTS (ENSMUSG00000020850.14) protein_coding-TTS (ENSMUSG00000020850.14) 1948 ENSMUSG00000020850.14 ENSMUSG00000020850 ENSMUST00000133995 Prpf8 protein_coding Interval_139941 chr6 112933573 112933782 + 0 NA intron (ENSMUSG00000030257.16, intron 1 of 21) protein_coding-intron (ENSMUSG00000030257.16, intron 1 of 9) -13360 ENSMUSG00000108103.1 ENSMUSG00000108103 ENSMUST00000204406 Gm44081 lincRNA Interval_29491 chr11 84419136 84419480 + 0 NA Intergenic Intergenic 94214 ENSMUSG00000018697.14 ENSMUSG00000018697 ENSMUST00000148434 Aatf protein_coding Interval_66804 chr16 37776481 37778912 + 0 NA intron (ENSMUSG00000022816.11, intron 1 of 2) protein_coding-intron (ENSMUSG00000022816.11, intron 2 of 10) 641 ENSMUSG00000022816.11 ENSMUSG00000022816 ENSMUST00000123077 Fstl1 protein_coding Interval_146686 chr7 49427908 49429414 + 0 NA intron (ENSMUSG00000052512.17, intron 6 of 38) protein_coding-intron (ENSMUSG00000052512.17, intron 5 of 5) -41051 ENSMUSG00000102148.1 ENSMUSG00000102148 ENSMUST00000193746 Gm38059 TEC Interval_101467 chr2 181600815 181601633 + 0 NA promoter-TSS (ENSMUSG00000002455.14) protein_coding-promoter-TSS (ENSMUSG00000002455.14) -149 ENSMUSG00000002455.14 ENSMUSG00000002455 ENSMUST00000139955 Prpf6 protein_coding Interval_86699 chr19 42744180 42745202 + 0 NA intron (ENSMUSG00000060224.4, intron 4 of 4) protein_coding-intron (ENSMUSG00000060224.4, intron 4 of 15) -1080 ENSMUSG00000118354.1 ENSMUSG00000118354 ENSMUST00000236540 Gm19437 antisense Interval_13866 chr10 24074525 24074851 + 0 NA Intergenic Intergenic -1812 ENSMUSG00000096442.1 ENSMUSG00000096442 ENSMUST00000051133 Taar8a protein_coding Interval_45213 chr13 53219368 53220636 + 0 NA intron (ENSMUSG00000021464.14, intron 1 of 8) protein_coding-intron (ENSMUSG00000021464.14, intron 1 of 8) 55656 ENSMUSG00000021464.14 ENSMUSG00000021464 ENSMUST00000149299 Ror2 protein_coding Interval_111993 chr4 33076783 33077679 + 0 NA intron (ENSMUSG00000023267.10, intron 2 of 8) protein_coding-intron (ENSMUSG00000023267.10, intron 2 of 8) -4274 ENSMUSG00000023267.10 ENSMUSG00000023267 ENSMUST00000147889 Gabrr2 protein_coding Interval_74453 chr17 50751165 50751987 + 0 NA intron (ENSMUSG00000023923.10, intron 19 of 21) protein_coding-intron (ENSMUSG00000023923.10, intron 19 of 21) 52888 ENSMUSG00000044645.8 ENSMUSG00000044645 ENSMUST00000061681 Gm7334 processed_pseudogene Interval_15974 chr10 59794794 59796096 + 0 NA intron (ENSMUSG00000020111.15, intron 8 of 12) protein_coding-intron (ENSMUSG00000020111.15, intron 10 of 13) 4809 ENSMUSG00000091184.1 ENSMUSG00000091184 ENSMUST00000168284 Gm17059 antisense Interval_8027 chr1 135283135 135284485 + 0 NA exon (ENSMUSG00000041926.15, exon 1 of 10) protein_coding-exon (ENSMUSG00000041926.15, exon 1 of 10) -6392 ENSMUSG00000041926.15 ENSMUSG00000041926 ENSMUST00000189615 Rnpep protein_coding Interval_30036 chr11 88822771 88823502 + 0 NA Intergenic Intergenic 18404 ENSMUSG00000018428.15 ENSMUSG00000018428 ENSMUST00000153787 Akap1 protein_coding Interval_27899 chr11 70713416 70713611 + 0 NA intron (ENSMUSG00000020821.17, intron 16 of 22) protein_coding-intron (ENSMUSG00000020821.17, intron 15 of 21) 7523 ENSMUSG00000105932.1 ENSMUSG00000105932 ENSMUST00000197857 Mir6925 miRNA Interval_36770 chr12 53474363 53475354 + 0 NA intron (ENSMUSG00000021010.9, intron 2 of 11) protein_coding-intron (ENSMUSG00000021010.9, intron 2 of 11) -165012 ENSMUSG00000113179.1 ENSMUSG00000113179 ENSMUST00000221214 1700030L22Rik antisense Interval_91999 chr2 52410338 52411091 + 0 NA intron (ENSMUSG00000036093.7, intron 1 of 2) protein_coding-intron (ENSMUSG00000036093.7, intron 4 of 5) 1601 ENSMUSG00000036093.7 ENSMUSG00000036093 ENSMUST00000130357 Arl5a protein_coding Interval_51838 chr14 32659817 32660759 + 0 NA exon (ENSMUSG00000071540.4, exon 4 of 4) protein_coding-exon (ENSMUSG00000071540.4, exon 4 of 4) 25005 ENSMUSG00000071540.4 ENSMUSG00000071540 ENSMUST00000226958 3425401B19Rik protein_coding Interval_45894 chr13 58911683 58912847 + 0 NA intron (ENSMUSG00000055254.15, intron 12 of 17) protein_coding-intron (ENSMUSG00000055254.15, intron 12 of 17) 76450 ENSMUSG00000055254.15 ENSMUSG00000055254 ENSMUST00000223636 Ntrk2 protein_coding Interval_79354 chr18 31052365 31052763 + 0 NA intron (ENSMUSG00000057455.12, intron 4 of 4) protein_coding-intron (ENSMUSG00000057455.12, intron 3 of 3) 160168 ENSMUSG00000057455.12 ENSMUSG00000057455 ENSMUST00000139924 Rit2 protein_coding Interval_173339 chrX 81147923 81148536 + 0 NA Intergenic Intergenic 77524 ENSMUSG00000025666.16 ENSMUSG00000025666 ENSMUST00000026760 Tmem47 protein_coding Interval_98105 chr2 148082414 148082678 + 0 NA Intergenic Intergenic -10707 ENSMUSG00000083750.1 ENSMUSG00000083750 ENSMUST00000122234 Gm14108 processed_pseudogene Interval_2752 chr1 44171732 44171987 + 0 NA intron (ENSMUSG00000026048.16, intron 8 of 13) protein_coding-intron (ENSMUSG00000026048.16, intron 8 of 14) 24115 ENSMUSG00000026048.16 ENSMUSG00000026048 ENSMUST00000155862 Ercc5 protein_coding Interval_28649 chr11 77551550 77552539 + 0 NA intron (ENSMUSG00000017291.13, intron 14 of 19) protein_coding-intron (ENSMUSG00000017291.13, intron 13 of 18) 9911 ENSMUSG00000081451.1 ENSMUSG00000081451 ENSMUST00000120228 Gm12734 processed_pseudogene Interval_160240 chr8 107395815 107396105 + 0 NA intron (ENSMUSG00000003849.8, intron 1 of 5) protein_coding-intron (ENSMUSG00000003849.8, intron 1 of 5) 7246 ENSMUSG00000003849.8 ENSMUSG00000003849 ENSMUST00000003947 Nqo1 protein_coding Interval_161443 chr8 120476885 120477164 + 0 NA intron (ENSMUSG00000031822.20, intron 2 of 2) protein_coding-intron (ENSMUSG00000092329.1, intron 1 of 15) -33475 ENSMUSG00000080549.2 ENSMUSG00000080549 ENSMUST00000116899 Gm22715 miRNA Interval_155661 chr8 35837240 35837972 + 0 NA Intergenic Intergenic -12031 ENSMUSG00000055976.6 ENSMUSG00000055976 ENSMUST00000210370 Cldn23 protein_coding Interval_116275 chr4 109223272 109223833 + 0 NA Intergenic Intergenic -21030 ENSMUSG00000028558.14 ENSMUSG00000028558 ENSMUST00000141555 Calr4 protein_coding Interval_109493 chr3 142917772 142918005 + 0 NA Intergenic Intergenic 19813 ENSMUSG00000105671.1 ENSMUSG00000105671 ENSMUST00000197517 Gm31306 transcribed_processed_pseudogene Interval_112395 chr4 41028410 41028704 + 0 NA Intergenic Intergenic 7753 ENSMUSG00000028427.13 ENSMUSG00000028427 ENSMUST00000149517 Aqp7 protein_coding Interval_19396 chr10 98941775 98942230 + 0 NA intron (ENSMUSG00000019943.10, intron 1 of 8) protein_coding-intron (ENSMUSG00000019943.10, intron 1 of 20) -48878 ENSMUSG00000019943.10 ENSMUSG00000019943 ENSMUST00000218419 Atp2b1 protein_coding Interval_3367 chr1 57479251 57479715 + 0 NA Intergenic Intergenic 11613 ENSMUSG00000088353.1 ENSMUSG00000088353 ENSMUST00000157728 Gm24014 snRNA Interval_80729 chr18 46629532 46629964 + 0 NA Intergenic Intergenic -1059 ENSMUSG00000117780.1 ENSMUSG00000117780 ENSMUST00000236340 Gm3734 lincRNA Interval_147494 chr7 67716261 67716783 + 0 NA intron (ENSMUSG00000030555.16, intron 5 of 6) protein_coding-intron (ENSMUSG00000030555.16, intron 10 of 11) -35219 ENSMUSG00000109115.1 ENSMUSG00000109115 ENSMUST00000207774 Gm44669 TEC Interval_6839 chr1 120006732 120008038 + 0 NA intron (ENSMUSG00000026387.15, intron 1 of 12) protein_coding-intron (ENSMUSG00000026387.15, intron 1 of 13) 351 ENSMUSG00000026387.15 ENSMUSG00000026387 ENSMUST00000189037 Sctr protein_coding Interval_56882 chr14 122789284 122789488 + 0 NA intron (ENSMUSG00000041650.15, intron 2 of 3) protein_coding-intron (ENSMUSG00000041650.15, intron 19 of 23) 103070 ENSMUSG00000115264.1 ENSMUSG00000115264 ENSMUST00000226674 Gm49260 TEC Interval_72460 chr17 29947453 29947888 + 0 NA intron (ENSMUSG00000043557.16, intron 1 of 20) protein_coding-intron (ENSMUSG00000043557.16, intron 1 of 20) -31650 ENSMUSG00000117528.1 ENSMUSG00000117528 ENSMUST00000234695 Gm50017 lincRNA Interval_70922 chr17 15993893 15994102 + 0 NA Intergenic Intergenic 148717 ENSMUSG00000116545.1 ENSMUSG00000116545 ENSMUST00000231929 Eif3s6-ps3 processed_pseudogene Interval_65639 chr16 24480538 24480831 + 0 NA intron (ENSMUSG00000033306.15, intron 3 of 6) protein_coding-intron (ENSMUSG00000033306.15, intron 3 of 12) -48710 ENSMUSG00000116875.1 ENSMUSG00000116875 ENSMUST00000231737 Morf4l1-ps1 processed_pseudogene Interval_130451 chr5 127715252 127715836 + 0 NA Intergenic Intergenic 83282 ENSMUSG00000049971.17 ENSMUSG00000049971 ENSMUST00000134529 Glt1d1 protein_coding Interval_122074 chr5 16180026 16181701 + 0 NA intron (ENSMUSG00000040118.15, intron 2 of 7) protein_coding-intron (ENSMUSG00000040118.15, intron 4 of 38) 73734 ENSMUSG00000105526.1 ENSMUSG00000105526 ENSMUST00000197593 Gm43490 TEC Interval_147594 chr7 68823334 68824639 + 0 NA Intergenic Intergenic -74798 ENSMUSG00000042659.15 ENSMUSG00000042659 ENSMUST00000118110 Arrdc4 protein_coding Interval_156820 chr8 60847362 60847906 + 0 NA TTS (ENSMUSG00000110261.1) processed_pseudogene-TTS (ENSMUSG00000110261.1) 1322 ENSMUSG00000110261.1 ENSMUSG00000110261 ENSMUST00000211229 Gm45485 processed_pseudogene Interval_66605 chr16 35587546 35589160 + 0 NA intron (ENSMUSG00000052133.16, intron 1 of 5) protein_coding-intron (ENSMUSG00000052133.16, intron 1 of 21) -14797 ENSMUSG00000052192.5 ENSMUSG00000052192 ENSMUST00000143451 Gm5963 processed_pseudogene Interval_132012 chr5 142280225 142280464 + 0 NA Intergenic Intergenic -2762 ENSMUSG00000097947.1 ENSMUSG00000097947 ENSMUST00000182990 Gm26970 processed_pseudogene Interval_166548 chr9 60813169 60814123 + 0 NA intron (ENSMUSG00000034485.10, intron 1 of 19) protein_coding-intron (ENSMUSG00000034485.10, intron 1 of 18) 19021 ENSMUSG00000034485.10 ENSMUSG00000034485 ENSMUST00000216574 Uaca protein_coding Interval_135557 chr6 40395760 40396150 + 0 NA TTS (ENSMUSG00000029916.11) protein_coding-TTS (ENSMUSG00000029916.11) 35453 ENSMUSG00000037172.14 ENSMUSG00000037172 ENSMUST00000200994 Dennd11 protein_coding Interval_25297 chr11 46176116 46176890 + 0 NA Intergenic Intergenic 6416 ENSMUSG00000099331.1 ENSMUSG00000099331 ENSMUST00000183384 Mir7239 miRNA Interval_57261 chr15 8200113 8200563 + 0 NA intron (ENSMUSG00000039801.7, intron 2 of 3) protein_coding-intron (ENSMUSG00000039801.7, intron 17 of 52) -19666 ENSMUSG00000064566.1 ENSMUSG00000064566 ENSMUST00000082632 Gm24144 snRNA Interval_34707 chr12 8848515 8849186 + 0 NA Intergenic Intergenic 28532 ENSMUSG00000042976.6 ENSMUSG00000042976 ENSMUST00000218928 9930038B18Rik lincRNA Interval_73097 chr17 34780327 34780496 + 0 NA intron (ENSMUSG00000092200.2, intron 3 of 18) unprocessed_pseudogene-intron (ENSMUSG00000092200.2, intron 3 of 18) 9016 ENSMUSG00000092200.2 ENSMUSG00000092200 ENSMUST00000173277 Tnxa unprocessed_pseudogene Interval_33941 chr11 119560602 119560843 + 0 NA intron (ENSMUSG00000087675.1, intron 1 of 3) processed_transcript-intron (ENSMUSG00000087675.1, intron 1 of 3) 12092 ENSMUSG00000087675.1 ENSMUSG00000087675 ENSMUST00000135630 Gm11762 processed_transcript Interval_71267 chr17 21746016 21746500 + 0 NA exon (ENSMUSG00000061544.13, exon 6 of 6) protein_coding-exon (ENSMUSG00000061544.13, exon 6 of 6) 12534 ENSMUSG00000061544.13 ENSMUSG00000061544 ENSMUST00000182603 Zfp229 protein_coding Interval_146787 chr7 51314029 51314603 + 0 NA Intergenic Intergenic -80513 ENSMUSG00000109443.1 ENSMUSG00000109443 ENSMUST00000208045 Gm45002 processed_pseudogene Interval_56656 chr14 121207151 121208672 + 0 NA intron (ENSMUSG00000025555.14, intron 2 of 7) protein_coding-intron (ENSMUSG00000025555.14, intron 3 of 26) -40795 ENSMUSG00000085133.2 ENSMUSG00000085133 ENSMUST00000130256 B930095G15Rik sense_intronic Interval_101144 chr2 178460304 178460947 + 0 NA promoter-TSS (ENSMUSG00000039155.15) protein_coding-promoter-TSS (ENSMUSG00000039155.15) -5 ENSMUSG00000039155.15 ENSMUSG00000039155 ENSMUST00000176869 Cdh26 protein_coding Interval_35054 chr12 16882712 16883518 + 0 NA Intergenic Intergenic -32234 ENSMUSG00000114018.1 ENSMUSG00000114018 ENSMUST00000221201 Gm36495 lincRNA Interval_163393 chr9 21232959 21234115 + 0 NA TTS (ENSMUSG00000097439.6) antisense-TTS (ENSMUSG00000097439.6) 5824 ENSMUSG00000003308.15 ENSMUSG00000003308 ENSMUST00000193247 Keap1 protein_coding Interval_33571 chr11 117284619 117285965 + 0 NA intron (ENSMUSG00000059248.13, intron 1 of 10) protein_coding-intron (ENSMUSG00000059248.13, intron 1 of 10) -21855 ENSMUSG00000086050.1 ENSMUSG00000086050 ENSMUST00000123882 Gm16045 antisense Interval_19127 chr10 94883514 94883915 + 0 NA promoter-TSS (ENSMUSG00000112736.1) TEC-promoter-TSS (ENSMUSG00000112736.1) 78 ENSMUSG00000112736.1 ENSMUSG00000112736 ENSMUST00000220244 Gm48718 TEC Interval_116214 chr4 108779856 108781099 + 0 NA promoter-TSS (ENSMUSG00000034557.14) protein_coding-promoter-TSS (ENSMUSG00000034557.14) 26 ENSMUSG00000034557.14 ENSMUSG00000034557 ENSMUST00000042185 Zfyve9 protein_coding Interval_165741 chr9 52070472 52070736 + 0 NA intron (ENSMUSG00000032050.18, intron 9 of 14) protein_coding-intron (ENSMUSG00000032050.18, intron 9 of 13) 22433 ENSMUSG00000032050.18 ENSMUSG00000032050 ENSMUST00000061352 Rdx protein_coding Interval_62340 chr15 90520363 90520907 + 0 NA intron (ENSMUSG00000052560.15, intron 13 of 18) protein_coding-intron (ENSMUSG00000052560.15, intron 14 of 19) -40712 ENSMUSG00000078847.1 ENSMUSG00000078847 ENSMUST00000108774 Gm6746 processed_pseudogene Interval_7264 chr1 128312412 128313995 + 0 NA intron (ENSMUSG00000026354.8, intron 2 of 16) protein_coding-intron (ENSMUSG00000026354.8, intron 2 of 16) -20939 ENSMUSG00000026354.8 ENSMUSG00000026354 ENSMUST00000162067 Lct protein_coding Interval_43022 chr13 23269207 23270990 + 0 NA TTS (ENSMUSG00000084096.1) unprocessed_pseudogene-TTS (ENSMUSG00000084096.1) 1218 ENSMUSG00000084096.1 ENSMUSG00000084096 ENSMUST00000120909 Vmn1r-ps135 unprocessed_pseudogene Interval_49938 chr13 118528919 118529439 + 0 NA Intergenic Intergenic -18266 ENSMUSG00000114668.1 ENSMUSG00000114668 ENSMUST00000225301 Gm47563 processed_pseudogene Interval_158618 chr8 84784223 84786934 + 0 NA intron (ENSMUSG00000001911.16, intron 1 of 9) protein_coding-intron (ENSMUSG00000001911.16, intron 1 of 8) -45944 ENSMUSG00000033751.5 ENSMUSG00000033751 ENSMUST00000036734 Gadd45gip1 protein_coding Interval_35952 chr12 32682678 32684051 + 0 NA Intergenic Intergenic -10070 ENSMUSG00000112617.1 ENSMUSG00000112617 ENSMUST00000220414 Gm47937 processed_pseudogene Interval_149117 chr7 94045781 94046223 + 0 NA intron (ENSMUSG00000108532.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000108532.1, intron 1 of 1) 3250 ENSMUSG00000108532.1 ENSMUSG00000108532 ENSMUST00000206579 Gm32647 lincRNA Interval_167647 chr9 71504612 71505540 + 0 NA TTS (ENSMUSG00000041361.13) protein_coding-TTS (ENSMUSG00000041361.13) -19171 ENSMUSG00000032199.13 ENSMUSG00000032199 ENSMUST00000233263 Polr2m protein_coding Interval_93660 chr2 75657868 75659983 + 0 NA promoter-TSS (ENSMUSG00000059005.13) protein_coding-promoter-TSS (ENSMUSG00000059005.13) -319 ENSMUSG00000093242.1 ENSMUSG00000093242 ENSMUST00000175501 Gm24574 miRNA Interval_94311 chr2 88122493 88123298 + 0 NA TTS (ENSMUSG00000101078.3) protein_coding-TTS (ENSMUSG00000101078.3) 5377 ENSMUSG00000101078.3 ENSMUSG00000101078 ENSMUST00000099833 Olfr1166 protein_coding Interval_137559 chr6 73204823 73205472 + 0 NA intron (ENSMUSG00000052861.13, intron 3 of 75) protein_coding-intron (ENSMUSG00000052861.13, intron 4 of 76) 7516 ENSMUSG00000052861.13 ENSMUSG00000052861 ENSMUST00000114038 Dnah6 protein_coding Interval_86805 chr19 43980582 43980979 + 0 NA intron (ENSMUSG00000025196.4, intron 2 of 8) protein_coding-intron (ENSMUSG00000025196.4, intron 2 of 8) -12087 ENSMUSG00000025196.4 ENSMUSG00000025196 ENSMUST00000131882 Cpn1 protein_coding Interval_51798 chr14 32268818 32269791 + 0 NA intron (ENSMUSG00000021911.16, intron 10 of 14) protein_coding-intron (ENSMUSG00000021911.16, intron 13 of 17) -1556 ENSMUSG00000091570.1 ENSMUSG00000091570 ENSMUST00000165950 Gm7707 processed_pseudogene Interval_35869 chr12 31376447 31377116 + 0 NA Intergenic Intergenic -25367 ENSMUSG00000020664.10 ENSMUSG00000020664 ENSMUST00000220415 Dld protein_coding Interval_71414 chr17 23609628 23611164 + 0 NA TTS (ENSMUSG00000023902.18) protein_coding-TTS (ENSMUSG00000023902.18) 9534 ENSMUSG00000023902.18 ENSMUSG00000023902 ENSMUST00000133749 Zscan10 protein_coding Interval_160067 chr8 106150007 106151124 + 0 NA promoter-TSS (ENSMUSG00000031903.7) protein_coding-promoter-TSS (ENSMUSG00000031903.7) 166 ENSMUSG00000031903.7 ENSMUSG00000031903 ENSMUST00000212059 Pla2g15 protein_coding Interval_124458 chr5 48325705 48327483 + 0 NA TTS (ENSMUSG00000106604.1) TEC-TTS (ENSMUSG00000106604.1) 1982 ENSMUSG00000106604.1 ENSMUSG00000106604 ENSMUST00000197312 Gm42535 TEC Interval_71619 chr17 24894656 24897073 + 0 NA promoter-TSS (ENSMUSG00000073435.10) protein_coding-promoter-TSS (ENSMUSG00000073435.10) 741 ENSMUSG00000038880.13 ENSMUSG00000038880 ENSMUST00000138648 Mrps34 protein_coding Interval_52076 chr14 35206275 35207439 + 0 NA intron (ENSMUSG00000041078.7, intron 4 of 15) protein_coding-intron (ENSMUSG00000041078.7, intron 4 of 15) 12581 ENSMUSG00000115826.1 ENSMUSG00000115826 ENSMUST00000227262 Gm49034 processed_pseudogene Interval_102228 chr3 19693946 19695116 + 0 NA intron (ENSMUSG00000049796.4, intron 1 of 1) protein_coding-intron (ENSMUSG00000049796.4, intron 1 of 1) 865 ENSMUSG00000049796.4 ENSMUSG00000049796 ENSMUST00000061294 Crh protein_coding Interval_152568 chr7 134681874 134682595 + 0 NA intron (ENSMUSG00000058325.6, intron 1 of 18) protein_coding-intron (ENSMUSG00000058325.6, intron 1 of 51) 11547 ENSMUSG00000058325.6 ENSMUSG00000058325 ENSMUST00000210121 Dock1 protein_coding Interval_148505 chr7 81920499 81921533 + 0 NA promoter-TSS (ENSMUSG00000109090.1) TEC-promoter-TSS (ENSMUSG00000109090.1) -666 ENSMUSG00000109090.1 ENSMUSG00000109090 ENSMUST00000207066 Gm45088 TEC Interval_156254 chr8 46570420 46571137 + 0 NA intron (ENSMUSG00000031629.14, intron 9 of 13) protein_coding-intron (ENSMUSG00000031629.14, intron 8 of 12) 18740 ENSMUSG00000031629.14 ENSMUSG00000031629 ENSMUST00000136724 Cenpu protein_coding Interval_118184 chr4 129415723 129416145 + 0 NA Intergenic Intergenic 16595 ENSMUSG00000048485.12 ENSMUSG00000048485 ENSMUST00000124364 Zbtb8b protein_coding Interval_112436 chr4 41258941 41260213 + 0 NA intron (ENSMUSG00000028433.14, intron 1 of 28) protein_coding-intron (ENSMUSG00000028433.14, intron 1 of 28) 6960 ENSMUSG00000081866.1 ENSMUSG00000081866 ENSMUST00000118435 Gm12401 processed_pseudogene Interval_40916 chr12 109873585 109873825 + 0 NA Intergenic Intergenic 21388 ENSMUSG00000113625.1 ENSMUSG00000113625 ENSMUST00000222259 Gm3379 processed_pseudogene Interval_41535 chr12 116065672 116067360 + 0 NA Intergenic Intergenic -11257 ENSMUSG00000011171.11 ENSMUSG00000011171 ENSMUST00000176433 Vipr2 protein_coding Interval_129813 chr5 122492508 122493796 + 0 NA exon (ENSMUSG00000105970.1, exon 1 of 1) TEC-exon (ENSMUSG00000105970.1, exon 1 of 1) 1756 ENSMUSG00000105970.1 ENSMUSG00000105970 ENSMUST00000197656 Gm43360 TEC Interval_146955 chr7 56224249 56224540 + 0 NA intron (ENSMUSG00000030451.16, intron 2 of 2) protein_coding-intron (ENSMUSG00000030451.16, intron 86 of 92) -7141 ENSMUSG00000108347.1 ENSMUSG00000108347 ENSMUST00000206781 Gm19187 processed_pseudogene Interval_174499 chrX 153611549 153611758 + 0 NA Intergenic Intergenic -35059 ENSMUSG00000065221.1 ENSMUSG00000065221 ENSMUST00000083287 Gm25793 snRNA Interval_62452 chr15 93115507 93116349 + 0 NA Intergenic Intergenic 21614 ENSMUSG00000116124.1 ENSMUSG00000116124 ENSMUST00000230014 Gm49420 processed_transcript Interval_143191 chr7 4349988 4350249 + 0 NA Intergenic Intergenic -9481 ENSMUSG00000108667.1 ENSMUSG00000108667 ENSMUST00000206883 Gm45013 processed_pseudogene Interval_163253 chr9 19743431 19743634 + 0 NA Intergenic Intergenic 6081 ENSMUSG00000110578.1 ENSMUSG00000110578 ENSMUST00000212591 Olfr858-ps1 unprocessed_pseudogene Interval_169125 chr9 92973897 92974223 + 0 NA Intergenic Intergenic -2166 ENSMUSG00000101309.1 ENSMUSG00000101309 ENSMUST00000185205 Gm29397 processed_pseudogene Interval_170877 chr9 111478902 111479428 + 0 NA intron (ENSMUSG00000032500.10, intron 2 of 4) protein_coding-intron (ENSMUSG00000032500.10, intron 2 of 4) 40084 ENSMUSG00000032500.10 ENSMUSG00000032500 ENSMUST00000111879 Dclk3 protein_coding Interval_57915 chr15 25373179 25374061 + 0 NA intron (ENSMUSG00000045763.8, intron 1 of 1) protein_coding-intron (ENSMUSG00000045763.8, intron 1 of 1) 40078 ENSMUSG00000045763.8 ENSMUSG00000045763 ENSMUST00000228597 Basp1 protein_coding Interval_106677 chr3 98421284 98422454 + 0 NA intron (ENSMUSG00000050064.14, intron 1 of 4) protein_coding-intron (ENSMUSG00000050064.14, intron 1 of 2) 27107 ENSMUSG00000106107.1 ENSMUSG00000106107 ENSMUST00000187850 Gm43190 sense_intronic Interval_37821 chr12 72267428 72267718 + 0 NA intron (ENSMUSG00000021087.18, intron 3 of 8) protein_coding-intron (ENSMUSG00000021087.18, intron 3 of 8) -31025 ENSMUSG00000021087.18 ENSMUSG00000021087 ENSMUST00000221756 Rtn1 protein_coding Interval_120035 chr4 141464466 141466131 + 0 NA promoter-TSS (ENSMUSG00000006215.12) protein_coding-promoter-TSS (ENSMUSG00000006215.12) 20592 ENSMUSG00000006215.12 ENSMUSG00000006215 ENSMUST00000130482 Zbtb17 protein_coding Interval_24252 chr11 31802749 31804258 + 0 NA intron (ENSMUSG00000085772.7, intron 1 of 4) lincRNA-intron (ENSMUSG00000085772.7, intron 1 of 3) 21021 ENSMUSG00000085772.7 ENSMUSG00000085772 ENSMUST00000126265 D630024D03Rik lincRNA Interval_63379 chr15 100698966 100699896 + 0 NA TTS (ENSMUSG00000090062.2) antisense-TTS (ENSMUSG00000090062.2) 3651 ENSMUSG00000090062.2 ENSMUSG00000090062 ENSMUST00000160960 Galnt6os antisense Interval_17223 chr10 75104176 75105473 + 0 NA intron (ENSMUSG00000009681.10, intron 1 of 22) protein_coding-intron (ENSMUSG00000009681.10, intron 1 of 22) 67735 ENSMUSG00000020175.15 ENSMUSG00000020175 ENSMUST00000151432 Rab36 protein_coding Interval_15887 chr10 58812174 58814177 + 0 NA promoter-TSS (ENSMUSG00000055958.3) pseudogene-promoter-TSS (ENSMUSG00000055958.3) -33 ENSMUSG00000055958.3 ENSMUSG00000055958 ENSMUST00000069768 Gm9987 pseudogene Interval_53734 chr14 61294212 61295230 + 0 NA TTS (ENSMUSG00000101505.1) antisense-TTS (ENSMUSG00000101505.1) -9933 ENSMUSG00000114920.1 ENSMUSG00000114920 ENSMUST00000225947 Gm19097 processed_pseudogene Interval_165492 chr9 48649218 48649457 + 0 NA Intergenic Intergenic -51962 ENSMUSG00000032271.13 ENSMUSG00000032271 ENSMUST00000128076 Nnmt protein_coding Interval_94987 chr2 102586682 102588157 + 0 NA intron (ENSMUSG00000027188.8, intron 3 of 6) protein_coding-intron (ENSMUSG00000027188.8, intron 3 of 10) 37270 ENSMUSG00000027188.8 ENSMUSG00000027188 ENSMUST00000143071 Pamr1 protein_coding Interval_157254 chr8 68556900 68557596 + 0 NA intron (ENSMUSG00000036356.15, intron 3 of 3) protein_coding-intron (ENSMUSG00000036356.15, intron 2 of 9) -27361 ENSMUSG00000036356.15 ENSMUSG00000036356 ENSMUST00000139141 Csgalnact1 protein_coding Interval_44980 chr13 51128466 51128943 + 0 NA intron (ENSMUSG00000021395.11, intron 3 of 5) protein_coding-intron (ENSMUSG00000021395.11, intron 3 of 5) -5615 ENSMUSG00000021395.11 ENSMUSG00000021395 ENSMUST00000223152 Spin1 protein_coding Interval_114984 chr4 88079072 88079670 + 0 NA Intergenic Intergenic 35567 ENSMUSG00000081530.1 ENSMUSG00000081530 ENSMUST00000119144 Gm12646 processed_pseudogene Interval_152171 chr7 130381165 130382411 + 0 NA intron (ENSMUSG00000030849.18, intron 2 of 6) protein_coding-intron (ENSMUSG00000030849.18, intron 2 of 6) -27426 ENSMUSG00000082988.3 ENSMUSG00000082988 ENSMUST00000121836 Gm5903 processed_pseudogene Interval_66926 chr16 38568698 38569665 + 0 NA TTS (ENSMUSG00000091238.1) antisense-TTS (ENSMUSG00000091238.1) 4119 ENSMUSG00000091238.1 ENSMUSG00000091238 ENSMUST00000168897 Gm17103 antisense Interval_100876 chr2 173056613 173057429 + 0 NA Intergenic Intergenic -22441 ENSMUSG00000087442.1 ENSMUSG00000087442 ENSMUST00000139677 Gm14453 antisense Interval_7835 chr1 134048874 134049251 + 0 NA TTS (ENSMUSG00000041559.7) protein_coding-TTS (ENSMUSG00000041559.7) 11566 ENSMUSG00000041559.7 ENSMUSG00000041559 ENSMUST00000162779 Fmod protein_coding Interval_21381 chr10 128282819 128285177 + 0 NA promoter-TSS (ENSMUSG00000040033.16) protein_coding-promoter-TSS (ENSMUSG00000040033.16) -109 ENSMUSG00000040033.16 ENSMUSG00000040033 ENSMUST00000220277 Stat2 protein_coding Interval_61386 chr15 81272502 81273213 + 0 NA intron (ENSMUSG00000115970.1, intron 1 of 3) lincRNA-intron (ENSMUSG00000115970.1, intron 1 of 3) -20995 ENSMUSG00000115970.1 ENSMUSG00000115970 ENSMUST00000230042 8430426J06Rik lincRNA Interval_85271 chr19 24266889 24267178 + 0 NA intron (ENSMUSG00000059363.10, intron 3 of 3) protein_coding-intron (ENSMUSG00000059363.10, intron 4 of 4) 11138 ENSMUSG00000059363.10 ENSMUSG00000059363 ENSMUST00000132688 Fxn protein_coding Interval_52546 chr14 47400564 47401030 + 0 NA intron (ENSMUSG00000037544.14, intron 11 of 16) protein_coding-intron (ENSMUSG00000037544.14, intron 11 of 18) 5586 ENSMUSG00000037544.14 ENSMUSG00000037544 ENSMUST00000179392 Dlgap5 protein_coding Interval_135852 chr6 47930823 47931182 + 0 NA exon (ENSMUSG00000052763.7, exon 5 of 5) protein_coding-exon (ENSMUSG00000052763.7, exon 5 of 5) 4696 ENSMUSG00000052763.7 ENSMUSG00000052763 ENSMUST00000156500 Zfp212 protein_coding Interval_41362 chr12 113087856 113088989 + 0 NA intron (ENSMUSG00000012211.13, intron 2 of 2) protein_coding-intron (ENSMUSG00000012211.13, intron 2 of 2) 13644 ENSMUSG00000012211.13 ENSMUSG00000012211 ENSMUST00000155492 Tex22 protein_coding Interval_171980 chr9 123156609 123157784 + 0 NA exon (ENSMUSG00000025784.5, exon 3 of 3) protein_coding-exon (ENSMUSG00000025784.5, exon 3 of 3) -5175 ENSMUSG00000077659.1 ENSMUSG00000077659 ENSMUST00000104471 Gm23323 snoRNA Interval_106392 chr3 95870233 95872070 + 0 NA promoter-TSS (ENSMUSG00000054312.6) protein_coding-promoter-TSS (ENSMUSG00000054312.6) 216 ENSMUSG00000054312.6 ENSMUSG00000054312 ENSMUST00000142437 Mrps21 protein_coding Interval_1040 chr1 14294273 14294878 + 0 NA intron (ENSMUSG00000025932.14, intron 1 of 6) protein_coding-intron (ENSMUSG00000025932.14, intron 3 of 17) 9995 ENSMUSG00000025932.14 ENSMUSG00000025932 ENSMUST00000185329 Eya1 protein_coding Interval_158086 chr8 78640444 78640938 + 0 NA intron (ENSMUSG00000031684.11, intron 1 of 2) protein_coding-intron (ENSMUSG00000031684.11, intron 5 of 11) 36397 ENSMUSG00000110244.1 ENSMUSG00000110244 ENSMUST00000211775 Gm2253 processed_pseudogene Interval_34858 chr12 12774534 12774929 + 0 NA Intergenic Intergenic -13254 ENSMUSG00000091430.1 ENSMUSG00000091430 ENSMUST00000171380 Platr19 lincRNA Interval_91334 chr2 37848374 37849111 + 0 NA intron (ENSMUSG00000035392.17, intron 17 of 18) protein_coding-intron (ENSMUSG00000035392.17, intron 18 of 21) 57571 ENSMUSG00000035403.10 ENSMUSG00000035403 ENSMUST00000137693 Crb2 protein_coding Interval_121678 chr5 5110784 5110976 + 0 NA intron (ENSMUSG00000028926.15, intron 6 of 9) protein_coding-intron (ENSMUSG00000028926.15, intron 6 of 14) 29227 ENSMUSG00000106054.1 ENSMUSG00000106054 ENSMUST00000199289 Gm43623 processed_transcript Interval_25967 chr11 53230501 53230816 + 0 NA Intergenic Intergenic 29974 ENSMUSG00000058073.4 ENSMUSG00000058073 ENSMUST00000117979 Gm11189 processed_pseudogene Interval_135157 chr6 37046104 37046454 + 0 NA intron (ENSMUSG00000038665.15, intron 12 of 32) protein_coding-intron (ENSMUSG00000038665.15, intron 12 of 32) 89429 ENSMUSG00000107310.1 ENSMUSG00000107310 ENSMUST00000202891 Gm7452 transcribed_processed_pseudogene Interval_161397 chr8 120216627 120217568 + 0 NA intron (ENSMUSG00000097960.1, intron 2 of 2) protein_coding-intron (ENSMUSG00000092329.1, intron 1 of 15) 11133 ENSMUSG00000097960.1 ENSMUSG00000097960 ENSMUST00000183235 A330074K22Rik lincRNA Interval_41139 chr12 111441657 111443069 + 0 NA promoter-TSS (ENSMUSG00000021281.15) protein_coding-promoter-TSS (ENSMUSG00000021281.15) -3721 ENSMUSG00000021281.15 ENSMUSG00000021281 ENSMUST00000127028 Tnfaip2 protein_coding Interval_137363 chr6 71707164 71708763 + 0 NA promoter-TSS (ENSMUSG00000052852.8) protein_coding-promoter-TSS (ENSMUSG00000052852.8) 93 ENSMUSG00000052852.8 ENSMUSG00000052852 ENSMUST00000212631 Reep1 protein_coding Interval_15468 chr10 47602463 47603450 + 0 NA Intergenic Intergenic -37167 ENSMUSG00000112702.1 ENSMUSG00000112702 ENSMUST00000217715 Gm47571 TEC Interval_52319 chr14 44843760 44844702 + 0 NA Intergenic Intergenic -1819 ENSMUSG00000115521.1 ENSMUSG00000115521 ENSMUST00000227561 Gm34198 processed_pseudogene Interval_52594 chr14 47776906 47777478 + 0 NA Intergenic Intergenic -19699 ENSMUSG00000115719.1 ENSMUSG00000115719 ENSMUST00000226197 4930538L07Rik lincRNA Interval_17040 chr10 70760350 70761442 + 0 NA Intergenic Intergenic -22052 ENSMUSG00000112607.1 ENSMUSG00000112607 ENSMUST00000219486 Gm33979 lincRNA Interval_6408 chr1 107280536 107281353 + 0 NA Intergenic Intergenic -2573 ENSMUSG00000073601.2 ENSMUSG00000073601 ENSMUST00000027565 Serpinb3c protein_coding Interval_143860 chr7 16795027 16796227 + 0 NA intron (ENSMUSG00000001918.17, intron 1 of 1) protein_coding-intron (ENSMUSG00000001918.17, intron 6 of 8) 13229 ENSMUSG00000001918.17 ENSMUSG00000001918 ENSMUST00000141349 Slc1a5 protein_coding Interval_37065 chr12 57243153 57244837 + 0 NA intron (ENSMUSG00000047022.18, intron 1 of 6) protein_coding-intron (ENSMUSG00000047022.18, intron 1 of 10) 13568 ENSMUSG00000047022.18 ENSMUSG00000047022 ENSMUST00000128945 Mipol1 protein_coding Interval_20928 chr10 122104950 122106073 + 0 NA Intergenic Intergenic -9375 ENSMUSG00000034620.17 ENSMUSG00000034620 ENSMUST00000135083 Rxylt1 protein_coding Interval_24910 chr11 41152232 41152447 + 0 NA Intergenic Intergenic 10576 ENSMUSG00000084129.1 ENSMUSG00000084129 ENSMUST00000119350 Hmgb1-ps1 processed_pseudogene Interval_69760 chr16 96091314 96092061 + 0 NA Intergenic Intergenic -5518 ENSMUSG00000117270.1 ENSMUSG00000117270 ENSMUST00000233464 Gm49953 lincRNA Interval_27160 chr11 63533275 63534331 + 0 NA Intergenic Intergenic 67120 ENSMUSG00000082256.1 ENSMUSG00000082256 ENSMUST00000119770 Gm12287 processed_pseudogene Interval_80067 chr18 37217183 37218603 + 0 NA intron (ENSMUSG00000103125.1, intron 1 of 2) protein_coding-intron (ENSMUSG00000103458.1, intron 1 of 3) -39379 ENSMUSG00000097430.2 ENSMUSG00000097430 ENSMUST00000192479 Gm10544 processed_transcript Interval_82068 chr18 67490967 67491474 + 0 NA exon (ENSMUSG00000024533.17, exon 15 of 15) protein_coding-exon (ENSMUSG00000024533.17, exon 15 of 15) 6509 ENSMUSG00000024533.17 ENSMUSG00000024533 ENSMUST00000226000 Spire1 protein_coding Interval_13639 chr10 20347355 20348759 + 0 NA promoter-TSS (ENSMUSG00000019992.8) protein_coding-promoter-TSS (ENSMUSG00000019992.8) 238 ENSMUSG00000019992.8 ENSMUSG00000019992 ENSMUST00000213374 Mtfr2 protein_coding Interval_77133 chr17 86779460 86780221 + 0 NA intron (ENSMUSG00000024140.10, intron 1 of 15) protein_coding-intron (ENSMUSG00000024140.10, intron 1 of 15) 6570 ENSMUSG00000117538.1 ENSMUSG00000117538 ENSMUST00000234482 Gm50008 TEC Interval_24347 chr11 32595960 32596942 + 0 NA intron (ENSMUSG00000020272.8, intron 2 of 3) protein_coding-intron (ENSMUSG00000020272.8, intron 7 of 18) 7856 ENSMUSG00000020272.8 ENSMUSG00000020272 ENSMUST00000143397 Stk10 protein_coding Interval_84324 chr19 10122068 10122458 + 0 NA Intergenic Intergenic -51076 ENSMUSG00000024665.8 ENSMUSG00000024665 ENSMUST00000235937 Fads2 protein_coding Interval_114995 chr4 88256376 88256543 + 0 NA intron (ENSMUSG00000038368.16, intron 13 of 41) protein_coding-intron (ENSMUSG00000038368.16, intron 15 of 43) 104763 ENSMUSG00000082597.1 ENSMUSG00000082597 ENSMUST00000117297 Gm12645 processed_pseudogene Interval_45979 chr13 59745943 59747177 + 0 NA exon (ENSMUSG00000114903.1, exon 1 of 2) lincRNA-exon (ENSMUSG00000114903.1, exon 1 of 2) -1643 ENSMUSG00000051054.4 ENSMUSG00000051054 ENSMUST00000178508 1700014D04Rik protein_coding Interval_98382 chr2 151988907 151989183 + 0 NA Intergenic Intergenic -10820 ENSMUSG00000027463.14 ENSMUSG00000027463 ENSMUST00000109858 Slc52a3 protein_coding Interval_120065 chr4 141623821 141624347 + 0 NA promoter-TSS (ENSMUSG00000040740.7) protein_coding-promoter-TSS (ENSMUSG00000040740.7) -263 ENSMUSG00000040740.7 ENSMUSG00000040740 ENSMUST00000038661 Slc25a34 protein_coding Interval_46823 chr13 71615206 71615908 + 0 NA Intergenic Intergenic 9417 ENSMUSG00000113305.1 ENSMUSG00000113305 ENSMUST00000220461 Gm47811 processed_pseudogene Interval_36399 chr12 43349284 43350128 + 0 NA intron (ENSMUSG00000112904.1, intron 2 of 2) lincRNA-intron (ENSMUSG00000112904.1, intron 2 of 2) 43563 ENSMUSG00000112904.1 ENSMUSG00000112904 ENSMUST00000217732 Gm47030 lincRNA Interval_96683 chr2 127118076 127118332 + 0 NA exon (ENSMUSG00000034906.15, exon 10 of 18) protein_coding-exon (ENSMUSG00000034906.15, exon 10 of 18) 3846 ENSMUSG00000034906.15 ENSMUSG00000034906 ENSMUST00000156625 Ncaph protein_coding Interval_26094 chr11 54112573 54113657 + 0 NA promoter-TSS (ENSMUSG00000018906.14) protein_coding-promoter-TSS (ENSMUSG00000018906.14) 12140 ENSMUSG00000018906.14 ENSMUSG00000018906 ENSMUST00000139315 P4ha2 protein_coding Interval_47001 chr13 74183461 74183805 + 0 NA intron (ENSMUSG00000034152.6, intron 7 of 12) protein_coding-intron (ENSMUSG00000034152.6, intron 7 of 12) 24629 ENSMUSG00000034152.6 ENSMUSG00000034152 ENSMUST00000220548 Exoc3 protein_coding Interval_139059 chr6 94676109 94677390 + 0 NA intron (ENSMUSG00000030029.14, intron 1 of 19) protein_coding-intron (ENSMUSG00000030029.14, intron 1 of 19) 23409 ENSMUSG00000030029.14 ENSMUSG00000030029 ENSMUST00000124165 Lrig1 protein_coding Interval_121192 chr4 153929598 153930197 + 0 NA Intergenic Intergenic 20606 ENSMUSG00000086272.1 ENSMUSG00000086272 ENSMUST00000141582 BC039966 antisense Interval_155478 chr8 33833522 33834029 + 0 NA TTS (ENSMUSG00000097442.1) antisense-TTS (ENSMUSG00000097442.1) 20572 ENSMUSG00000097442.1 ENSMUSG00000097442 ENSMUST00000181120 Gm26632 antisense Interval_112809 chr4 45195742 45196363 + 0 NA intron (ENSMUSG00000035615.12, intron 1 of 6) protein_coding-intron (ENSMUSG00000035615.12, intron 1 of 15) 11177 ENSMUSG00000035615.12 ENSMUSG00000035615 ENSMUST00000107804 Frmpd1 protein_coding Interval_5604 chr1 90152997 90154056 + 0 NA promoter-TSS (ENSMUSG00000026301.16) protein_coding-promoter-TSS (ENSMUSG00000026301.16) -102 ENSMUSG00000100850.1 ENSMUSG00000100850 ENSMUST00000190254 4930434B07Rik lincRNA Interval_88179 chr19 60363437 60363656 + 0 NA Intergenic Intergenic 104758 ENSMUSG00000045052.3 ENSMUSG00000045052 ENSMUST00000051277 Prlhr protein_coding Interval_41478 chr12 114826475 114826727 + 0 NA Intergenic Intergenic 3096 ENSMUSG00000096649.2 ENSMUSG00000096649 ENSMUST00000195735 Ighv1-31 IG_V_gene Interval_5751 chr1 91451284 91452148 + 0 NA intron (ENSMUSG00000055866.9, intron 1 of 22) protein_coding-intron (ENSMUSG00000055866.9, intron 1 of 22) -1851 ENSMUSG00000055866.9 ENSMUSG00000055866 ENSMUST00000185298 Per2 protein_coding Interval_23805 chr11 26426116 26426705 + 0 NA intron (ENSMUSG00000004018.9, intron 2 of 3) protein_coding-intron (ENSMUSG00000004018.9, intron 6 of 13) 17203 ENSMUSG00000081811.1 ENSMUSG00000081811 ENSMUST00000118404 Gm12713 processed_pseudogene Interval_63195 chr15 99670207 99671215 + 0 NA exon (ENSMUSG00000023017.10, exon 1 of 12) protein_coding-exon (ENSMUSG00000023017.10, exon 1 of 12) -19099 ENSMUSG00000023015.14 ENSMUSG00000023015 ENSMUST00000109581 Racgap1 protein_coding Interval_134647 chr6 30150635 30151117 + 0 NA intron (ENSMUSG00000058440.14, intron 11 of 11) protein_coding-intron (ENSMUSG00000058440.14, intron 11 of 11) -6749 ENSMUSG00000065343.1 ENSMUSG00000065343 ENSMUST00000083409 Gm25580 misc_RNA Interval_45267 chr13 53757860 53758401 + 0 NA Intergenic Intergenic -18497 ENSMUSG00000114143.1 ENSMUSG00000114143 ENSMUST00000221931 Gm48548 lincRNA Interval_78656 chr18 16484958 16485516 + 0 NA Intergenic Intergenic -210293 ENSMUSG00000063628.2 ENSMUSG00000063628 ENSMUST00000076710 Gm7665 processed_pseudogene Interval_106404 chr3 95963602 95964073 + 0 NA TTS (ENSMUSG00000106640.1) processed_pseudogene-TTS (ENSMUSG00000106640.1) 551 ENSMUSG00000106640.1 ENSMUSG00000106640 ENSMUST00000197308 Gm20940 processed_pseudogene Interval_77826 chr18 4249543 4249965 + 0 NA Intergenic Intergenic 44728 ENSMUSG00000117482.1 ENSMUSG00000117482 ENSMUST00000234061 Gm7400 processed_pseudogene Interval_117283 chr4 121359814 121360259 + 0 NA Intergenic Intergenic -19758 ENSMUSG00000083941.1 ENSMUSG00000083941 ENSMUST00000118684 Gm12889 processed_pseudogene Interval_83701 chr19 3841677 3843135 + 0 NA intron (ENSMUSG00000082848.1, intron 1 of 2) antisense-intron (ENSMUSG00000082848.1, intron 1 of 2) -9426 ENSMUSG00000024843.15 ENSMUSG00000024843 ENSMUST00000125013 Chka protein_coding Interval_8777 chr1 151009233 151009851 + 0 NA Intergenic Intergenic 8502 ENSMUSG00000099622.1 ENSMUSG00000099622 ENSMUST00000191173 Gm29188 lincRNA Interval_138925 chr6 93587840 93588033 + 0 NA Intergenic Intergenic 62289 ENSMUSG00000107739.1 ENSMUSG00000107739 ENSMUST00000203479 Gm7812 processed_pseudogene Interval_68950 chr16 89633225 89633421 + 0 NA exon (ENSMUSG00000116651.1, exon 2 of 3) processed_pseudogene-exon (ENSMUSG00000116651.1, exon 2 of 3) 817 ENSMUSG00000116651.1 ENSMUSG00000116651 ENSMUST00000232201 Gm17844 processed_pseudogene Interval_122827 chr5 25831782 25832038 + 0 NA intron (ENSMUSG00000056367.14, intron 7 of 10) protein_coding-intron (ENSMUSG00000056367.14, intron 8 of 11) 71871 ENSMUSG00000056367.14 ENSMUSG00000056367 ENSMUST00000198693 Actr3b protein_coding Interval_127620 chr5 105835816 105836706 + 0 NA Intergenic Intergenic -17273 ENSMUSG00000084878.1 ENSMUSG00000084878 ENSMUST00000135958 Lrrc8dos antisense Interval_7749 chr1 133415405 133418508 + 0 NA intron (ENSMUSG00000070643.11, intron 1 of 13) protein_coding-intron (ENSMUSG00000070643.11, intron 1 of 13) 7421 ENSMUSG00000070643.11 ENSMUSG00000070643 ENSMUST00000126530 Sox13 protein_coding Interval_167297 chr9 67108117 67108488 + 0 NA exon (ENSMUSG00000111825.1, exon 3 of 3) lincRNA-exon (ENSMUSG00000111825.1, exon 3 of 3) 4094 ENSMUSG00000088021.1 ENSMUSG00000088021 ENSMUST00000157396 Gm22145 snRNA Interval_170807 chr9 110895572 110897180 + 0 NA promoter-TSS (ENSMUSG00000105140.1) TEC-promoter-TSS (ENSMUSG00000105140.1) -477 ENSMUSG00000105140.1 ENSMUSG00000105140 ENSMUST00000195890 Gm43127 TEC Interval_25335 chr11 46449514 46450199 + 0 NA Intergenic Intergenic 1491 ENSMUSG00000082530.1 ENSMUSG00000082530 ENSMUST00000119051 Gm12168 processed_pseudogene Interval_31586 chr11 101537824 101538170 + 0 NA intron (ENSMUSG00000017146.12, intron 2 of 4) protein_coding-intron (ENSMUSG00000017146.12, intron 3 of 22) -13139 ENSMUSG00000017146.12 ENSMUSG00000017146 ENSMUST00000190862 Brca1 protein_coding Interval_21023 chr10 123478555 123479027 + 0 NA intron (ENSMUSG00000044071.9, intron 2 of 5) protein_coding-intron (ENSMUSG00000044071.9, intron 2 of 5) 41291 ENSMUSG00000112036.1 ENSMUSG00000112036 ENSMUST00000220160 Gm47801 TEC Interval_123694 chr5 34573013 34574263 + 0 NA promoter-TSS (ENSMUSG00000029106.14) protein_coding-promoter-TSS (ENSMUSG00000029106.14) -513 ENSMUSG00000099082.1 ENSMUSG00000099082 ENSMUST00000184791 Mir7036b miRNA Interval_153425 chr7 144675785 144676410 + 0 NA intron (ENSMUSG00000031075.19, intron 2 of 25) protein_coding-intron (ENSMUSG00000031075.19, intron 2 of 24) 62469 ENSMUSG00000031075.19 ENSMUSG00000031075 ENSMUST00000131731 Ano1 protein_coding Interval_81875 chr18 65565356 65566208 + 0 NA Intergenic Intergenic 14962 ENSMUSG00000117992.1 ENSMUSG00000117992 ENSMUST00000236474 Gm41760 antisense Interval_26278 chr11 55614492 55615136 + 0 NA Intergenic Intergenic -7081 ENSMUSG00000000263.15 ENSMUSG00000000263 ENSMUST00000102716 Glra1 protein_coding Interval_47482 chr13 85184827 85185196 + 0 NA Intergenic Intergenic -26311 ENSMUSG00000021548.10 ENSMUSG00000021548 ENSMUST00000166932 Ccnh protein_coding Interval_85149 chr19 23175013 23176009 + 0 NA Intergenic Intergenic 26080 ENSMUSG00000080626.1 ENSMUSG00000080626 ENSMUST00000116976 Mir1192 miRNA Interval_10951 chr1 177498537 177499315 + 0 NA Intergenic Intergenic 31548 ENSMUSG00000103043.1 ENSMUSG00000103043 ENSMUST00000193447 Gm37306 lincRNA Interval_131310 chr5 136327608 136328062 + 0 NA intron (ENSMUSG00000029705.17, intron 4 of 8) protein_coding-intron (ENSMUSG00000029705.17, intron 10 of 23) 22396 ENSMUSG00000102415.1 ENSMUSG00000102415 ENSMUST00000195666 A430110C17Rik TEC Interval_118582 chr4 132620288 132620949 + 0 NA Intergenic Intergenic -18428 ENSMUSG00000028886.15 ENSMUSG00000028886 ENSMUST00000130833 Eya3 protein_coding Interval_27693 chr11 69513770 69514883 + 0 NA intron (ENSMUSG00000005237.14, intron 13 of 13) protein_coding-intron (ENSMUSG00000005237.14, intron 11 of 84) 4063 ENSMUSG00000005237.14 ENSMUSG00000005237 ENSMUST00000154985 Dnah2 protein_coding Interval_2105 chr1 36464042 36464819 + 0 NA Intergenic Intergenic -7566 ENSMUSG00000037408.10 ENSMUSG00000037408 ENSMUST00000192530 Cnnm4 protein_coding Interval_38108 chr12 75684896 75685127 + 0 NA Intergenic Intergenic -15484 ENSMUSG00000045690.8 ENSMUSG00000045690 ENSMUST00000187307 Wdr89 protein_coding Interval_142295 chr6 140501825 140502448 + 0 NA intron (ENSMUSG00000030231.11, intron 1 of 9) protein_coding-intron (ENSMUSG00000030231.11, intron 3 of 30) -28827 ENSMUSG00000084477.1 ENSMUSG00000084477 ENSMUST00000122528 Gm25780 misc_RNA Interval_23107 chr11 19977780 19979251 + 0 NA intron (ENSMUSG00000045671.17, intron 1 of 5) protein_coding-intron (ENSMUSG00000045671.17, intron 1 of 5) 23945 ENSMUSG00000045671.17 ENSMUSG00000045671 ENSMUST00000123036 Spred2 protein_coding Interval_46178 chr13 62244225 62246029 + 0 NA Intergenic Intergenic -27634 ENSMUSG00000113081.1 ENSMUSG00000113081 ENSMUST00000221763 Gm3333 transcribed_processed_pseudogene Interval_30572 chr11 95183876 95184581 + 0 NA Intergenic Intergenic 7415 ENSMUSG00000083548.1 ENSMUSG00000083548 ENSMUST00000117670 Gm11514 processed_pseudogene Interval_141010 chr6 124360613 124361036 + 0 NA Intergenic Intergenic 3695 ENSMUSG00000107737.1 ENSMUSG00000107737 ENSMUST00000203901 1700027F06Rik lincRNA Interval_82144 chr18 68029853 68030085 + 0 NA intron (ENSMUSG00000024544.9, intron 1 of 5) protein_coding-intron (ENSMUSG00000024544.9, intron 1 of 5) 88405 ENSMUSG00000117891.1 ENSMUSG00000117891 ENSMUST00000236198 Gm41764 antisense Interval_48154 chr13 96707888 96708690 + 0 NA Intergenic Intergenic -30166 ENSMUSG00000113351.1 ENSMUSG00000113351 ENSMUST00000221591 Gm48575 processed_pseudogene Interval_1326 chr1 20651254 20651548 + 0 NA Intergenic Intergenic -18481 ENSMUSG00000099906.2 ENSMUSG00000099906 ENSMUST00000185494 Gm28653 lincRNA Interval_150505 chr7 111289244 111289441 + 0 NA Intergenic Intergenic -76956 ENSMUSG00000109808.1 ENSMUSG00000109808 ENSMUST00000211799 5430402P08Rik lincRNA Interval_38635 chr12 80720689 80722434 + 0 NA promoter-TSS (ENSMUSG00000066438.6) protein_coding-promoter-TSS (ENSMUSG00000066438.6) -171 ENSMUSG00000066438.6 ENSMUSG00000066438 ENSMUST00000153762 Plekhd1 protein_coding Interval_87376 chr19 48052100 48052423 + 0 NA Intergenic Intergenic -65087 ENSMUSG00000117690.1 ENSMUSG00000117690 ENSMUST00000237618 Gm50430 lincRNA Interval_25252 chr11 45898332 45898600 + 0 NA intron (ENSMUSG00000006169.20, intron 7 of 7) protein_coding-intron (ENSMUSG00000006169.20, intron 8 of 11) 16069 ENSMUSG00000006169.20 ENSMUSG00000006169 ENSMUST00000133715 Clint1 protein_coding Interval_117735 chr4 125915118 125915468 + 0 NA intron (ENSMUSG00000085562.7, intron 2 of 5) lincRNA-intron (ENSMUSG00000085562.7, intron 2 of 5) 7124 ENSMUSG00000085562.7 ENSMUSG00000085562 ENSMUST00000144539 2610028E06Rik lincRNA Interval_132859 chr5 148361882 148362815 + 0 NA intron (ENSMUSG00000041313.14, intron 2 of 2) protein_coding-intron (ENSMUSG00000041313.14, intron 2 of 12) 37443 ENSMUSG00000041313.14 ENSMUSG00000041313 ENSMUST00000201348 Slc7a1 protein_coding Interval_141351 chr6 127518895 127522685 + 0 NA Intergenic Intergenic 34997 ENSMUSG00000106962.1 ENSMUSG00000106962 ENSMUST00000202455 Gm43633 TEC Interval_53458 chr14 57658095 57658561 + 0 NA intron (ENSMUSG00000114942.1, intron 6 of 8) protein_coding-intron (ENSMUSG00000021952.16, intron 1 of 22) 7102 ENSMUSG00000021952.16 ENSMUSG00000021952 ENSMUST00000173638 Xpo4 protein_coding Interval_44790 chr13 48662420 48663757 + 0 NA promoter-TSS (ENSMUSG00000021381.4) protein_coding-promoter-TSS (ENSMUSG00000021381.4) 90 ENSMUSG00000021381.4 ENSMUSG00000021381 ENSMUST00000021813 Barx1 protein_coding Interval_34366 chr12 3635650 3636551 + 0 NA intron (ENSMUSG00000071454.13, intron 6 of 20) protein_coding-intron (ENSMUSG00000071454.13, intron 6 of 18) -63078 ENSMUSG00000077830.1 ENSMUSG00000077830 ENSMUST00000104640 Gm26050 miRNA Interval_171077 chr9 114418367 114418564 + 0 NA intron (ENSMUSG00000045594.10, intron 2 of 15) protein_coding-intron (ENSMUSG00000045594.10, intron 2 of 15) 17357 ENSMUSG00000045594.10 ENSMUSG00000045594 ENSMUST00000217583 Glb1 protein_coding Interval_143205 chr7 4477885 4479915 + 0 NA TTS (ENSMUSG00000006154.13) protein_coding-TTS (ENSMUSG00000006154.13) 7032 ENSMUSG00000019254.16 ENSMUSG00000019254 ENSMUST00000125220 Ppp1r12c protein_coding Interval_36283 chr12 40657236 40657813 + 0 NA intron (ENSMUSG00000035954.10, intron 8 of 31) protein_coding-intron (ENSMUSG00000035954.10, intron 8 of 52) 211441 ENSMUSG00000035954.10 ENSMUSG00000035954 ENSMUST00000220850 Dock4 protein_coding Interval_66814 chr16 37813848 37814953 + 0 NA intron (ENSMUSG00000022816.11, intron 1 of 2) protein_coding-intron (ENSMUSG00000022816.11, intron 2 of 10) 37345 ENSMUSG00000022816.11 ENSMUSG00000022816 ENSMUST00000123077 Fstl1 protein_coding Interval_73769 chr17 43459919 43461617 + 0 NA Intergenic Intergenic 6513 ENSMUSG00000064582.1 ENSMUSG00000064582 ENSMUST00000082648 Gm25135 snRNA Interval_20356 chr10 117081848 117082172 + 0 NA TTS (ENSMUSG00000020170.4) protein_coding-TTS (ENSMUSG00000020170.4) -27109 ENSMUSG00000034024.8 ENSMUSG00000034024 ENSMUST00000218059 Cct2 protein_coding Interval_929 chr1 13245593 13245952 + 0 NA intron (ENSMUSG00000005886.14, intron 1 of 3) protein_coding-intron (ENSMUSG00000005886.14, intron 2 of 22) -9338 ENSMUSG00000103495.1 ENSMUSG00000103495 ENSMUST00000195811 Gm37409 TEC Interval_130438 chr5 127627086 127627768 + 0 NA intron (ENSMUSG00000029416.17, intron 1 of 1) protein_coding-intron (ENSMUSG00000029416.17, intron 1 of 5) -4835 ENSMUSG00000049971.17 ENSMUSG00000049971 ENSMUST00000134529 Glt1d1 protein_coding Interval_46151 chr13 62037714 62038188 + 0 NA intron (ENSMUSG00000113836.1, intron 1 of 2) transcribed_processed_pseudogene-intron (ENSMUSG00000113836.1, intron 1 of 3) 2529 ENSMUSG00000074868.2 ENSMUSG00000074868 ENSMUST00000099450 Gm6478 processed_pseudogene Interval_163085 chr9 15138095 15138850 + 0 NA Intergenic Intergenic -26364 ENSMUSG00000031936.9 ENSMUSG00000031936 ENSMUST00000159985 Hephl1 protein_coding Interval_123098 chr5 29698221 29699894 + 0 NA Intergenic Intergenic 7635 ENSMUSG00000104648.1 ENSMUSG00000104648 ENSMUST00000195937 Gm42570 processed_pseudogene Interval_48968 chr13 106282838 106283063 + 0 NA Intergenic Intergenic -85179 ENSMUSG00000108515.1 ENSMUSG00000108515 ENSMUST00000205589 Olfr717-ps1 unprocessed_pseudogene Interval_172677 chrX 42039230 42039711 + 0 NA Intergenic Intergenic -20451 ENSMUSG00000025860.15 ENSMUSG00000025860 ENSMUST00000026978 Xiap protein_coding Interval_42457 chr13 13748336 13748559 + 0 NA TTS (ENSMUSG00000019726.12) protein_coding-TTS (ENSMUSG00000019726.12) -40897 ENSMUSG00000087898.1 ENSMUSG00000087898 ENSMUST00000157273 Gm25271 misc_RNA Interval_28941 chr11 79407641 79408031 + 0 NA intron (ENSMUSG00000020716.16, intron 5 of 30) protein_coding-intron (ENSMUSG00000020716.16, intron 5 of 57) -35606 ENSMUSG00000082304.1 ENSMUSG00000082304 ENSMUST00000119771 Gm11198 processed_pseudogene Interval_45263 chr13 53670303 53670790 + 0 NA Intergenic Intergenic 21961 ENSMUSG00000113329.1 ENSMUSG00000113329 ENSMUST00000221718 4930555G21Rik lincRNA Interval_59205 chr15 48111850 48112058 + 0 NA intron (ENSMUSG00000022311.15, intron 13 of 70) protein_coding-intron (ENSMUSG00000022311.15, intron 13 of 70) 311281 ENSMUSG00000077752.1 ENSMUSG00000077752 ENSMUST00000104564 Gm23530 snoRNA Interval_17923 chr10 80848384 80849243 + 0 NA Intergenic Intergenic -5015 ENSMUSG00000051067.8 ENSMUSG00000051067 ENSMUST00000219924 Lingo3 protein_coding Interval_17986 chr10 81246330 81246653 + 0 NA intron (ENSMUSG00000034949.18, intron 9 of 15) protein_coding-intron (ENSMUSG00000034949.18, intron 10 of 17) -2560 ENSMUSG00000034949.18 ENSMUSG00000034949 ENSMUST00000148029 Zfr2 protein_coding Interval_85029 chr19 21669870 21670088 + 0 NA intron (ENSMUSG00000047368.4, intron 1 of 3) protein_coding-intron (ENSMUSG00000047368.4, intron 1 of 3) -10655 ENSMUSG00000047368.4 ENSMUSG00000047368 ENSMUST00000236549 Abhd17b protein_coding Interval_99600 chr2 163462414 163464061 + 0 NA Intergenic Intergenic -8720 ENSMUSG00000053353.5 ENSMUSG00000053353 ENSMUST00000065731 2310001K24Rik antisense Interval_56991 chr15 3508200 3509339 + 0 NA intron (ENSMUSG00000055737.12, intron 1 of 4) protein_coding-intron (ENSMUSG00000055737.12, intron 1 of 10) 74443 ENSMUSG00000055737.12 ENSMUSG00000055737 ENSMUST00000159912 Ghr protein_coding Interval_17638 chr10 78402078 78402291 + 0 NA TTS (ENSMUSG00000061032.9) protein_coding-TTS (ENSMUSG00000061032.9) 6361 ENSMUSG00000098376.1 ENSMUSG00000098376 ENSMUST00000183764 Mir6907 miRNA Interval_145086 chr7 29953431 29954989 + 0 NA promoter-TSS (ENSMUSG00000059975.15) protein_coding-promoter-TSS (ENSMUSG00000059975.15) -121 ENSMUSG00000059975.15 ENSMUSG00000059975 ENSMUST00000149793 Zfp74 protein_coding Interval_134912 chr6 33516568 33516981 + 0 NA intron (ENSMUSG00000029763.17, intron 9 of 12) protein_coding-intron (ENSMUSG00000029763.17, intron 9 of 17) 83766 ENSMUSG00000107358.1 ENSMUSG00000107358 ENSMUST00000201039 Gm43168 TEC Interval_22110 chr11 6402660 6403377 + 0 NA intron (ENSMUSG00000041164.15, intron 16 of 19) protein_coding-intron (ENSMUSG00000041164.15, intron 16 of 19) 1388 ENSMUSG00000098516.1 ENSMUSG00000098516 ENSMUST00000184154 Mir7651 miRNA Interval_116754 chr4 117103787 117106203 + 0 NA promoter-TSS (ENSMUSG00000028681.11) protein_coding-promoter-TSS (ENSMUSG00000028681.11) 75 ENSMUSG00000028681.11 ENSMUSG00000028681 ENSMUST00000123226 Ptch2 protein_coding Interval_83511 chr18 88616410 88616721 + 0 NA intron (ENSMUSG00000118352.1, intron 1 of 4) lincRNA-intron (ENSMUSG00000118352.1, intron 1 of 4) 7163 ENSMUSG00000118352.1 ENSMUSG00000118352 ENSMUST00000237266 Gm50401 lincRNA Interval_25672 chr11 50672663 50673789 + 0 NA intron (ENSMUSG00000036545.9, intron 3 of 20) protein_coding-intron (ENSMUSG00000036545.9, intron 3 of 21) 45689 ENSMUSG00000087080.1 ENSMUSG00000087080 ENSMUST00000137567 Gm12199 antisense Interval_113943 chr4 60623287 60623676 + 0 NA Intergenic Intergenic 25884 ENSMUSG00000082868.1 ENSMUSG00000082868 ENSMUST00000118667 Mup-ps5 unprocessed_pseudogene Interval_62133 chr15 87748883 87749786 + 0 NA intron (ENSMUSG00000054863.9, intron 3 of 3) protein_coding-intron (ENSMUSG00000054863.9, intron 3 of 3) 46609 ENSMUSG00000098938.1 ENSMUSG00000098938 ENSMUST00000183709 Mir6393 miRNA Interval_170683 chr9 110083536 110085114 + 0 NA TTS (ENSMUSG00000032479.15) protein_coding-TTS (ENSMUSG00000032479.15) 1190 ENSMUSG00000032480.17 ENSMUSG00000032480 ENSMUST00000197979 Dhx30 protein_coding Interval_90532 chr2 30995323 30996691 + 0 NA promoter-TSS (ENSMUSG00000026854.16) protein_coding-promoter-TSS (ENSMUSG00000026854.16) 13673 ENSMUSG00000026854.16 ENSMUSG00000026854 ENSMUST00000127776 Usp20 protein_coding Interval_43686 chr13 34993529 34994759 + 0 NA promoter-TSS (ENSMUSG00000021417.15) protein_coding-promoter-TSS (ENSMUSG00000021417.15) 30086 ENSMUSG00000085962.8 ENSMUSG00000085962 ENSMUST00000171079 Gm16984 antisense Interval_63308 chr15 100241731 100242262 + 0 NA intron (ENSMUSG00000023027.13, intron 1 of 3) protein_coding-intron (ENSMUSG00000023027.13, intron 2 of 6) 9798 ENSMUSG00000023027.13 ENSMUSG00000023027 ENSMUST00000166435 Atf1 protein_coding Interval_136863 chr6 61831943 61832164 + 0 NA intron (ENSMUSG00000039578.17, intron 9 of 10) protein_coding-intron (ENSMUSG00000039578.17, intron 8 of 9) -124636 ENSMUSG00000039578.17 ENSMUSG00000039578 ENSMUST00000232648 Ccser1 protein_coding Interval_104221 chr3 60938916 60939095 + 0 NA Intergenic Intergenic 61991 ENSMUSG00000027694.9 ENSMUSG00000027694 ENSMUST00000099086 Gm8325 transcribed_processed_pseudogene Interval_174028 chrX 130538295 130539852 + 0 NA Intergenic Intergenic 14436 ENSMUSG00000081456.1 ENSMUSG00000081456 ENSMUST00000117258 Gm7781 processed_pseudogene Interval_46708 chr13 69521632 69522368 + 0 NA intron (ENSMUSG00000034575.13, intron 1 of 12) protein_coding-intron (ENSMUSG00000034575.13, intron 1 of 12) 8000 ENSMUSG00000113486.1 ENSMUSG00000113486 ENSMUST00000221578 Gm48676 processed_pseudogene Interval_89473 chr2 20873453 20874762 + 0 NA intron (ENSMUSG00000036591.16, intron 2 of 19) protein_coding-intron (ENSMUSG00000036591.16, intron 9 of 25) -14311 ENSMUSG00000036591.16 ENSMUSG00000036591 ENSMUST00000173654 Arhgap21 protein_coding Interval_90106 chr2 28104332 28104555 + 0 NA intron (ENSMUSG00000086425.7, intron 2 of 3) lincRNA-intron (ENSMUSG00000086425.7, intron 2 of 7) 8960 ENSMUSG00000086425.7 ENSMUSG00000086425 ENSMUST00000128888 F730016J06Rik lincRNA Interval_170588 chr9 109084616 109085838 + 0 NA intron (ENSMUSG00000025645.8, intron 1 of 3) protein_coding-intron (ENSMUSG00000025645.8, intron 1 of 3) 2734 ENSMUSG00000025645.8 ENSMUSG00000025645 ENSMUST00000026735 Ccdc51 protein_coding Interval_98832 chr2 155400230 155400514 + 0 NA intron (ENSMUSG00000038369.14, intron 1 of 3) protein_coding-intron (ENSMUSG00000038369.14, intron 11 of 13) 3189 ENSMUSG00000038369.14 ENSMUSG00000038369 ENSMUST00000134508 Ncoa6 protein_coding Interval_101292 chr2 180207092 180208986 + 0 NA intron (ENSMUSG00000015647.9, intron 3 of 78) protein_coding-intron (ENSMUSG00000015647.9, intron 3 of 78) -28216 ENSMUSG00000098735.1 ENSMUSG00000098735 ENSMUST00000185089 Mir7005 miRNA Interval_3364 chr1 57449747 57450312 + 0 NA Intergenic Intergenic -17841 ENSMUSG00000088353.1 ENSMUSG00000088353 ENSMUST00000157728 Gm24014 snRNA Interval_39441 chr12 87423862 87425155 + 0 NA Intergenic Intergenic 3997 ENSMUSG00000114103.1 ENSMUSG00000114103 ENSMUST00000220777 Gm8557 processed_pseudogene Interval_159520 chr8 95209727 95210305 + 0 NA Intergenic Intergenic 71706 ENSMUSG00000110475.1 ENSMUSG00000110475 ENSMUST00000212925 Gm31036 antisense Interval_136582 chr6 56048885 56049365 + 0 NA Intergenic Intergenic 31628 ENSMUSG00000002930.6 ENSMUSG00000002930 ENSMUST00000052827 Ppp1r17 protein_coding Interval_131524 chr5 137733709 137734757 + 0 NA intron (ENSMUSG00000045348.16, intron 4 of 5) protein_coding-intron (ENSMUSG00000045348.16, intron 4 of 6) 5485 ENSMUSG00000045348.16 ENSMUSG00000045348 ENSMUST00000149512 Nyap1 protein_coding Interval_49616 chr13 113571725 113572596 + 0 NA Intergenic Intergenic -4393 ENSMUSG00000114715.1 ENSMUSG00000114715 ENSMUST00000225395 Gm34471 lincRNA Interval_137437 chr6 72286582 72286958 + 0 NA Intergenic Intergenic -17855 ENSMUSG00000056370.15 ENSMUSG00000056370 ENSMUST00000182765 Sftpb protein_coding Interval_15456 chr10 46922512 46923766 + 0 NA Intergenic Intergenic -66637 ENSMUSG00000111499.1 ENSMUSG00000111499 ENSMUST00000216234 Gm47562 processed_pseudogene Interval_72361 chr17 29422544 29422850 + 0 NA Intergenic Intergenic 12060 ENSMUSG00000117575.1 ENSMUSG00000117575 ENSMUST00000234181 Gm36486 processed_transcript Interval_75396 chr17 66339466 66339820 + 0 NA intron (ENSMUSG00000052105.17, intron 11 of 11) protein_coding-intron (ENSMUSG00000052105.17, intron 13 of 13) -20131 ENSMUSG00000117010.1 ENSMUSG00000117010 ENSMUST00000233050 Gm49933 processed_pseudogene Interval_74098 chr17 46565103 46565311 + 0 NA exon (ENSMUSG00000023972.10, exon 20 of 20) protein_coding-exon (ENSMUSG00000023972.10, exon 20 of 20) 7743 ENSMUSG00000023972.10 ENSMUSG00000023972 ENSMUST00000044442 Ptk7 protein_coding Interval_174099 chrX 134723587 134724224 + 0 NA Intergenic Intergenic 5902 ENSMUSG00000033460.14 ENSMUSG00000033460 ENSMUST00000137173 Armcx1 protein_coding Interval_7035 chr1 123133791 123135104 + 0 NA Intergenic Intergenic 14770 ENSMUSG00000100762.1 ENSMUSG00000100762 ENSMUST00000189712 Gm8403 processed_pseudogene Interval_30463 chr11 94526513 94526748 + 0 NA Intergenic Intergenic -5074 ENSMUSG00000039110.15 ENSMUSG00000039110 ENSMUST00000151993 Mycbpap protein_coding Interval_173578 chrX 99819384 99821439 + 0 NA promoter-TSS (ENSMUSG00000071719.2) protein_coding-promoter-TSS (ENSMUSG00000071719.2) -610 ENSMUSG00000071719.2 ENSMUSG00000071719 ENSMUST00000096363 Tmem28 protein_coding Interval_103357 chr3 40388315 40388590 + 0 NA Intergenic Intergenic 121322 ENSMUSG00000037884.6 ENSMUSG00000037884 ENSMUST00000202778 1700017G19Rik lincRNA Interval_110543 chr4 3788951 3789149 + 0 NA intron (ENSMUSG00000042228.14, intron 4 of 4) protein_coding-intron (ENSMUSG00000042228.14, intron 12 of 12) 7533 ENSMUSG00000077271.1 ENSMUSG00000077271 ENSMUST00000104083 Gm22781 snoRNA Interval_63144 chr15 99364672 99364979 + 0 NA intron (ENSMUSG00000023008.18, intron 1 of 25) protein_coding-intron (ENSMUSG00000023008.18, intron 1 of 24) 3310 ENSMUSG00000095635.1 ENSMUSG00000095635 ENSMUST00000179471 Gm22951 snRNA Interval_104768 chr3 72452264 72452739 + 0 NA Intergenic Intergenic 139560 ENSMUSG00000098869.1 ENSMUSG00000098869 ENSMUST00000184290 Gm27465 misc_RNA Interval_92920 chr2 68565194 68565880 + 0 NA promoter-TSS (ENSMUSG00000116244.1) transcribed_unprocessed_pseudogene-promoter-TSS (ENSMUSG00000116244.1) 3018 ENSMUSG00000115996.1 ENSMUSG00000115996 ENSMUST00000230308 Gm49462 lincRNA Interval_147460 chr7 67463114 67464398 + 0 NA Intergenic Intergenic -19823 ENSMUSG00000109329.1 ENSMUSG00000109329 ENSMUST00000208755 Gm33926 lincRNA Interval_92157 chr2 54621937 54622172 + 0 NA intron (ENSMUSG00000060988.12, intron 2 of 2) protein_coding-intron (ENSMUSG00000060988.12, intron 1 of 10) -55918 ENSMUSG00000089272.1 ENSMUSG00000089272 ENSMUST00000158647 Gm24549 snoRNA Interval_163214 chr9 18372717 18373552 + 0 NA intron (ENSMUSG00000043943.14, intron 9 of 21) protein_coding-intron (ENSMUSG00000043943.14, intron 8 of 20) -27408 ENSMUSG00000110944.1 ENSMUSG00000110944 ENSMUST00000216944 Gm19174 processed_pseudogene Interval_93597 chr2 74723242 74723467 + 0 NA exon (ENSMUSG00000101174.8, exon 3 of 6) protein_coding-exon (ENSMUSG00000101174.8, exon 3 of 6) -2716 ENSMUSG00000065500.3 ENSMUSG00000065500 ENSMUST00000083566 Mir10b miRNA Interval_10003 chr1 164895996 164896841 + 0 NA intron (ENSMUSG00000104117.5, intron 2 of 3) antisense-intron (ENSMUSG00000103659.1, intron 1 of 2) -20065 ENSMUSG00000103320.1 ENSMUSG00000103320 ENSMUST00000193775 Gm37403 TEC Interval_27558 chr11 68691146 68693014 + 0 NA promoter-TSS (ENSMUSG00000020900.15) protein_coding-promoter-TSS (ENSMUSG00000020900.15) -74 ENSMUSG00000020900.15 ENSMUSG00000020900 ENSMUST00000139059 Myh10 protein_coding Interval_65437 chr16 22353939 22354522 + 0 NA Intergenic Intergenic 47599 ENSMUSG00000013089.15 ENSMUSG00000013089 ENSMUST00000170393 Etv5 protein_coding Interval_142502 chr6 142908785 142909125 + 0 NA intron (ENSMUSG00000030283.7, intron 2 of 4) protein_coding-intron (ENSMUSG00000030283.7, intron 2 of 4) 55186 ENSMUSG00000030283.7 ENSMUSG00000030283 ENSMUST00000147058 St8sia1 protein_coding Interval_61715 chr15 83537089 83537351 + 0 NA TTS (ENSMUSG00000116217.1) processed_pseudogene-TTS (ENSMUSG00000116217.1) 1456 ENSMUSG00000116217.1 ENSMUSG00000116217 ENSMUST00000229232 Gm46495 processed_pseudogene Interval_76128 chr17 75319365 75319769 + 0 NA intron (ENSMUSG00000001870.16, intron 23 of 34) protein_coding-intron (ENSMUSG00000001870.16, intron 22 of 33) -116329 ENSMUSG00000071042.12 ENSMUSG00000071042 ENSMUST00000234011 Rasgrp3 protein_coding Interval_103833 chr3 53499402 53499651 + 0 NA intron (ENSMUSG00000027744.4, intron 3 of 6) protein_coding-intron (ENSMUSG00000027744.4, intron 3 of 6) -9402 ENSMUSG00000105481.1 ENSMUSG00000105481 ENSMUST00000198286 6430500D05Rik TEC Interval_8900 chr1 151933171 151933559 + 0 NA intron (ENSMUSG00000032666.16, intron 3 of 6) protein_coding-intron (ENSMUSG00000032666.16, intron 3 of 5) 57946 ENSMUSG00000100685.1 ENSMUSG00000100685 ENSMUST00000187716 Gm28610 antisense Interval_120644 chr4 149856384 149856880 + 0 NA Intergenic Intergenic 38868 ENSMUSG00000106221.1 ENSMUSG00000106221 ENSMUST00000199807 Gm47301 miRNA Interval_111797 chr4 29414804 29415454 + 0 NA Intergenic Intergenic -75027 ENSMUSG00000082058.1 ENSMUSG00000082058 ENSMUST00000118135 Gm11923 processed_pseudogene Interval_120754 chr4 150465625 150466867 + 0 NA intron (ENSMUSG00000039852.17, intron 4 of 22) protein_coding-intron (ENSMUSG00000039852.17, intron 4 of 22) 102298 ENSMUSG00000085213.1 ENSMUSG00000085213 ENSMUST00000128800 Gm13091 antisense Interval_163843 chr9 27098156 27098586 + 0 NA promoter-TSS (ENSMUSG00000111390.1) antisense-promoter-TSS (ENSMUSG00000111390.1) -180 ENSMUSG00000111390.1 ENSMUSG00000111390 ENSMUST00000217654 Gm48796 antisense Interval_122754 chr5 25146497 25147597 + 0 NA Intergenic Intergenic 20912 ENSMUSG00000105763.1 ENSMUSG00000105763 ENSMUST00000198800 Gm19088 processed_pseudogene Interval_16475 chr10 63065742 63066569 + 0 NA intron (ENSMUSG00000112129.1, intron 2 of 8) protein_coding-intron (ENSMUSG00000112129.1, intron 2 of 8) -1311 ENSMUSG00000112129.1 ENSMUSG00000112129 ENSMUST00000219829 Pbld1 protein_coding Interval_30164 chr11 90030315 90031397 + 0 NA intron (ENSMUSG00000069763.3, intron 1 of 2) protein_coding-intron (ENSMUSG00000069763.3, intron 1 of 2) 508 ENSMUSG00000069763.3 ENSMUSG00000069763 ENSMUST00000092788 Tmem100 protein_coding Interval_152299 chr7 131559908 131560968 + 0 NA promoter-TSS (ENSMUSG00000066979.6) protein_coding-promoter-TSS (ENSMUSG00000066979.6) 31 ENSMUSG00000066979.6 ENSMUSG00000066979 ENSMUST00000207442 Bub3 protein_coding Interval_110378 chr3 157565147 157565396 + 0 NA Intergenic Intergenic -1629 ENSMUSG00000040016.16 ENSMUSG00000040016 ENSMUST00000173533 Ptger3 protein_coding Interval_18154 chr10 83060263 83060490 + 0 NA intron (ENSMUSG00000034612.7, intron 1 of 2) protein_coding-intron (ENSMUSG00000034612.7, intron 1 of 2) -28681 ENSMUSG00000112084.1 ENSMUSG00000112084 ENSMUST00000218071 Gm10773 TEC Interval_15403 chr10 45497403 45498023 + 0 NA Intergenic Intergenic -11318 ENSMUSG00000063804.8 ENSMUSG00000063804 ENSMUST00000214555 Lin28b protein_coding Interval_117646 chr4 125246267 125246891 + 0 NA Intergenic Intergenic 17982 ENSMUSG00000087010.1 ENSMUSG00000087010 ENSMUST00000130055 1700041M05Rik lincRNA Interval_158387 chr8 83299775 83300379 + 0 NA Intergenic Intergenic 9725 ENSMUSG00000031710.4 ENSMUSG00000031710 ENSMUST00000034146 Ucp1 protein_coding Interval_167054 chr9 64927461 64927694 + 0 NA intron (ENSMUSG00000034452.7, intron 7 of 9) protein_coding-intron (ENSMUSG00000034452.7, intron 7 of 9) 15094 ENSMUSG00000053641.9 ENSMUSG00000053641 ENSMUST00000217307 Dennd4a protein_coding Interval_164044 chr9 31106078 31106678 + 0 NA exon (ENSMUSG00000031995.9, exon 5 of 9) protein_coding-exon (ENSMUSG00000031995.9, exon 5 of 9) -2840 ENSMUSG00000031995.9 ENSMUSG00000031995 ENSMUST00000123557 St14 protein_coding Interval_159963 chr8 105445757 105446345 + 0 NA intron (ENSMUSG00000054320.16, intron 6 of 13) protein_coding-intron (ENSMUSG00000054320.16, intron 3 of 10) 23359 ENSMUSG00000014846.12 ENSMUSG00000014846 ENSMUST00000176419 Tppp3 protein_coding Interval_39786 chr12 98302616 98303709 + 0 NA Intergenic Intergenic -23501 ENSMUSG00000112510.1 ENSMUSG00000112510 ENSMUST00000218404 Gm47566 antisense Interval_125613 chr5 72696448 72696968 + 0 NA intron (ENSMUSG00000054892.14, intron 13 of 13) protein_coding-intron (ENSMUSG00000054892.14, intron 14 of 14) -29354 ENSMUSG00000105089.2 ENSMUSG00000105089 ENSMUST00000198684 Gm43717 processed_pseudogene Interval_7670 chr1 132938278 132939388 + 0 NA exon (ENSMUSG00000026443.3, exon 2 of 2) protein_coding-exon (ENSMUSG00000026443.3, exon 2 of 2) 6487 ENSMUSG00000102709.1 ENSMUSG00000102709 ENSMUST00000194934 Gm38308 TEC Interval_163564 chr9 22216676 22218092 + 0 NA Intergenic Intergenic -3524 ENSMUSG00000090925.2 ENSMUSG00000090925 ENSMUST00000167359 1810064F22Rik antisense Interval_49178 chr13 109219469 109219879 + 0 NA intron (ENSMUSG00000021699.17, intron 1 of 14) protein_coding-intron (ENSMUSG00000021699.17, intron 1 of 14) -105070 ENSMUSG00000076946.2 ENSMUSG00000076946 ENSMUST00000103758 Mir582 miRNA Interval_125626 chr5 72869958 72870147 + 0 NA Intergenic Intergenic -25603 ENSMUSG00000029217.16 ENSMUSG00000029217 ENSMUST00000202547 Tec protein_coding Interval_172096 chrX 7428794 7430109 + 0 NA intron (ENSMUSG00000063018.6, intron 2 of 3) processed_transcript-intron (ENSMUSG00000063018.6, intron 2 of 3) -8366 ENSMUSG00000063018.6 ENSMUSG00000063018 ENSMUST00000150671 2010204K13Rik processed_transcript Interval_5633 chr1 90448605 90448814 + 0 NA Intergenic Intergenic 5792 ENSMUSG00000101997.1 ENSMUSG00000101997 ENSMUST00000187630 Gm28722 lincRNA Interval_39164 chr12 85530472 85530959 + 0 NA intron (ENSMUSG00000114163.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000114163.1, intron 1 of 2) 1117 ENSMUSG00000114163.1 ENSMUSG00000114163 ENSMUST00000220590 Gm32296 lincRNA Interval_134738 chr6 31099309 31101377 + 0 NA intron (ENSMUSG00000044471.12, intron 2 of 5) lincRNA-intron (ENSMUSG00000044471.12, intron 3 of 3) -2503 ENSMUSG00000087312.1 ENSMUSG00000087312 ENSMUST00000146766 Gm13833 lincRNA Interval_131321 chr5 136442770 136443299 + 0 NA intron (ENSMUSG00000029705.17, intron 1 of 20) protein_coding-intron (ENSMUSG00000029705.17, intron 2 of 23) -67231 ENSMUSG00000106479.1 ENSMUSG00000106479 ENSMUST00000200230 Mir721 miRNA Interval_42374 chr13 12440646 12441600 + 0 NA TTS (ENSMUSG00000050244.9) protein_coding-TTS (ENSMUSG00000050244.9) 15400 ENSMUSG00000057554.13 ENSMUSG00000057554 ENSMUST00000152478 Lgals8 protein_coding Interval_131135 chr5 135353251 135354025 + 0 NA exon (ENSMUSG00000053388.10, exon 1 of 6) protein_coding-exon (ENSMUSG00000053388.10, exon 1 of 6) 343 ENSMUSG00000053388.10 ENSMUSG00000053388 ENSMUST00000065785 Trim50 protein_coding Interval_88904 chr2 12449552 12449924 + 0 NA Intergenic Intergenic -27712 ENSMUSG00000083547.2 ENSMUSG00000083547 ENSMUST00000117101 Gm13321 processed_pseudogene Interval_7591 chr1 132371376 132371807 + 0 NA intron (ENSMUSG00000042066.16, intron 2 of 4) protein_coding-intron (ENSMUSG00000042066.16, intron 2 of 4) -3704 ENSMUSG00000042066.16 ENSMUSG00000042066 ENSMUST00000125439 Tmcc2 protein_coding Interval_155544 chr8 34215168 34216839 + 0 NA promoter-TSS (ENSMUSG00000100605.1) lincRNA-promoter-TSS (ENSMUSG00000100605.1) -856 ENSMUSG00000100605.1 ENSMUSG00000100605 ENSMUST00000188318 Gm29243 lincRNA Interval_16766 chr10 68035845 68037126 + 0 NA intron (ENSMUSG00000037846.18, intron 10 of 14) protein_coding-intron (ENSMUSG00000037846.18, intron 10 of 14) -9859 ENSMUSG00000086838.1 ENSMUSG00000086838 ENSMUST00000143555 Gm16212 antisense Interval_150301 chr7 109457369 109458632 + 0 NA intron (ENSMUSG00000031026.15, intron 14 of 19) protein_coding-intron (ENSMUSG00000031026.15, intron 14 of 19) 17134 ENSMUSG00000031026.15 ENSMUSG00000031026 ENSMUST00000137704 Trim66 protein_coding Interval_3753 chr1 62794246 62796486 + 0 NA intron (ENSMUSG00000025969.15, intron 15 of 15) protein_coding-intron (ENSMUSG00000025969.15, intron 15 of 15) -13936 ENSMUSG00000103032.1 ENSMUSG00000103032 ENSMUST00000192219 Gm37121 TEC Interval_7639 chr1 132733821 132734304 + 0 NA intron (ENSMUSG00000026442.14, intron 1 of 2) protein_coding-intron (ENSMUSG00000026442.14, intron 1 of 29) 4707 ENSMUSG00000101126.1 ENSMUSG00000101126 ENSMUST00000189499 Gm10538 antisense Interval_135947 chr6 49035877 49037818 + 0 NA exon (ENSMUSG00000029816.10, exon 1 of 1) protein_coding-exon (ENSMUSG00000029816.10, exon 1 of 1) 301 ENSMUSG00000029816.10 ENSMUSG00000029816 ENSMUST00000204460 Gpnmb protein_coding Interval_137887 chr6 83147265 83148154 + 0 NA promoter-TSS (ENSMUSG00000034930.16) protein_coding-promoter-TSS (ENSMUSG00000034930.16) -3601 ENSMUSG00000034930.16 ENSMUSG00000034930 ENSMUST00000213056 Rtkn protein_coding Interval_19445 chr10 99298475 99299688 + 0 NA promoter-TSS (ENSMUSG00000044633.4) lincRNA-promoter-TSS (ENSMUSG00000044633.4) -85 ENSMUSG00000044633.4 ENSMUSG00000044633 ENSMUST00000060657 B530045E10Rik lincRNA Interval_112188 chr4 35318528 35318826 + 0 NA Intergenic Intergenic -82381 ENSMUSG00000083934.1 ENSMUSG00000083934 ENSMUST00000122251 Gm12368 processed_pseudogene Interval_26402 chr11 57657400 57658170 + 0 NA promoter-TSS (ENSMUSG00000086933.1) antisense-promoter-TSS (ENSMUSG00000086933.1) 41 ENSMUSG00000086933.1 ENSMUSG00000086933 ENSMUST00000143009 4933426K07Rik antisense Interval_75867 chr17 72225065 72225337 + 0 NA intron (ENSMUSG00000055471.7, intron 3 of 4) protein_coding-intron (ENSMUSG00000055471.7, intron 3 of 28) -31057 ENSMUSG00000117046.1 ENSMUSG00000117046 ENSMUST00000233853 Gm19183 processed_pseudogene Interval_98767 chr2 154812324 154813020 + 0 NA intron (ENSMUSG00000027593.15, intron 2 of 3) protein_coding-intron (ENSMUSG00000027593.15, intron 1 of 9) 21318 ENSMUSG00000027593.15 ENSMUSG00000027593 ENSMUST00000151578 Raly protein_coding Interval_112783 chr4 44973232 44974139 + 0 NA intron (ENSMUSG00000086205.1, intron 1 of 1) antisense-intron (ENSMUSG00000086205.1, intron 1 of 1) 4634 ENSMUSG00000086205.1 ENSMUSG00000086205 ENSMUST00000123899 Gm12679 antisense Interval_91448 chr2 38941583 38941923 + 0 NA exon (ENSMUSG00000046618.7, exon 2 of 8) protein_coding-exon (ENSMUSG00000046618.7, exon 2 of 8) 2410 ENSMUSG00000083776.1 ENSMUSG00000083776 ENSMUST00000119289 Gm13473 processed_pseudogene Interval_25763 chr11 51590983 51591647 + 0 NA promoter-TSS (ENSMUSG00000020359.13) protein_coding-promoter-TSS (ENSMUSG00000020359.13) -7952 ENSMUSG00000020359.13 ENSMUSG00000020359 ENSMUST00000169995 Phykpl protein_coding Interval_73382 chr17 36895948 36896823 + 0 NA Intergenic Intergenic -1733 ENSMUSG00000058063.4 ENSMUSG00000058063 ENSMUST00000078438 Trim31 protein_coding Interval_140757 chr6 121088475 121089786 + 0 NA intron (ENSMUSG00000051586.17, intron 1 of 14) protein_coding-intron (ENSMUSG00000051586.17, intron 1 of 14) -7521 ENSMUSG00000051586.17 ENSMUSG00000051586 ENSMUST00000207993 Mical3 protein_coding Interval_123701 chr5 34597309 34598052 + 0 NA exon (ENSMUSG00000029106.14, exon 1 of 1) protein_coding-exon (ENSMUSG00000029106.14, exon 1 of 1) -19087 ENSMUSG00000029106.14 ENSMUSG00000029106 ENSMUST00000139044 Add1 protein_coding Interval_104603 chr3 68713501 68713833 + 0 NA Intergenic Intergenic -19470 ENSMUSG00000058360.5 ENSMUSG00000058360 ENSMUST00000080726 Gm10040 pseudogene Interval_81702 chr18 63693873 63694386 + 0 NA exon (ENSMUSG00000024583.3, exon 3 of 3) protein_coding-exon (ENSMUSG00000024583.3, exon 3 of 3) 14665 ENSMUSG00000024583.3 ENSMUSG00000024583 ENSMUST00000236253 Txnl1 protein_coding Interval_25274 chr11 46055585 46057331 + 0 NA intron (ENSMUSG00000011256.16, intron 2 of 3) protein_coding-intron (ENSMUSG00000011256.16, intron 1 of 22) -4137 ENSMUSG00000069899.3 ENSMUSG00000069899 ENSMUST00000154156 Gm12166 protein_coding Interval_143091 chr6 149220375 149220625 + 0 NA Intergenic Intergenic -5315 ENSMUSG00000107526.1 ENSMUSG00000107526 ENSMUST00000205198 1700003I16Rik lincRNA Interval_50254 chr14 11444405 11444722 + 0 NA Intergenic Intergenic -15796 ENSMUSG00000114786.1 ENSMUSG00000114786 ENSMUST00000225280 Gm48594 lincRNA Interval_164567 chr9 38842422 38843258 + 0 NA Intergenic Intergenic -1609 ENSMUSG00000062103.5 ENSMUSG00000062103 ENSMUST00000072977 Olfr924 protein_coding Interval_41335 chr12 112908988 112910686 + 0 NA TTS (ENSMUSG00000002799.6) protein_coding-TTS (ENSMUSG00000002799.6) 531 ENSMUSG00000002799.6 ENSMUSG00000002799 ENSMUST00000222402 Jag2 protein_coding Interval_44072 chr13 40722544 40723586 + 0 NA promoter-TSS (ENSMUSG00000114936.1) antisense-promoter-TSS (ENSMUSG00000114936.1) -45 ENSMUSG00000114936.1 ENSMUSG00000114936 ENSMUST00000224038 Gm47061 antisense Interval_31654 chr11 102039822 102040880 + 0 NA Intergenic Intergenic -1158 ENSMUSG00000017309.11 ENSMUSG00000017309 ENSMUST00000107164 Cd300lg protein_coding Interval_110922 chr4 10290523 10290776 + 0 NA Intergenic Intergenic 149094 ENSMUSG00000084215.3 ENSMUSG00000084215 ENSMUST00000119515 Gm11814 processed_pseudogene Interval_34313 chr12 3319548 3320025 + 0 NA Intergenic Intergenic -9817 ENSMUSG00000020671.9 ENSMUSG00000020671 ENSMUST00000021001 Rab10 protein_coding Interval_16938 chr10 70022877 70023099 + 0 NA intron (ENSMUSG00000069601.14, intron 42 of 42) protein_coding-intron (ENSMUSG00000069601.14, intron 19 of 19) -152023 ENSMUSG00000048701.13 ENSMUSG00000048701 ENSMUST00000135607 Ccdc6 protein_coding Interval_102476 chr3 27094403 27094777 + 0 NA Intergenic Intergenic -14392 ENSMUSG00000087742.1 ENSMUSG00000087742 ENSMUST00000157117 Gm25152 snoRNA Interval_68501 chr16 78271588 78272178 + 0 NA intron (ENSMUSG00000109841.2, intron 1 of 2) processed_transcript-intron (ENSMUSG00000109841.2, intron 1 of 2) 20830 ENSMUSG00000116798.1 ENSMUSG00000116798 ENSMUST00000231924 Gm49591 processed_pseudogene Interval_43244 chr13 26768941 26770605 + 0 NA exon (ENSMUSG00000045835.5, exon 1 of 1) protein_coding-exon (ENSMUSG00000045835.5, exon 1 of 1) 380 ENSMUSG00000114342.1 ENSMUSG00000114342 ENSMUST00000224024 4921520N01Rik antisense Interval_141692 chr6 133547606 133547809 + 0 NA Intergenic Intergenic 16461 ENSMUSG00000108023.1 ENSMUSG00000108023 ENSMUST00000204304 Gm44245 processed_pseudogene Interval_82574 chr18 75233720 75236032 + 0 NA intron (ENSMUSG00000035765.10, intron 15 of 16) protein_coding-intron (ENSMUSG00000035765.10, intron 15 of 16) -52062 ENSMUSG00000094153.2 ENSMUSG00000094153 ENSMUST00000179328 Gm8807 processed_pseudogene Interval_152050 chr7 128573903 128574463 + 0 NA Intergenic Intergenic 19160 ENSMUSG00000108795.1 ENSMUSG00000108795 ENSMUST00000205396 Gm45121 lincRNA Interval_14119 chr10 27685174 27685893 + 0 NA intron (ENSMUSG00000112610.1, intron 1 of 4) lincRNA-intron (ENSMUSG00000112610.1, intron 1 of 4) 12794 ENSMUSG00000112610.1 ENSMUSG00000112610 ENSMUST00000218769 Gm30165 lincRNA Interval_62287 chr15 89465199 89465673 + 0 NA TTS (ENSMUSG00000022619.5) protein_coding-TTS (ENSMUSG00000022619.5) 8835 ENSMUSG00000022620.14 ENSMUSG00000022620 ENSMUST00000168052 Arsa protein_coding Interval_61971 chr15 85576120 85578310 + 0 NA intron (ENSMUSG00000022382.15, intron 1 of 3) protein_coding-intron (ENSMUSG00000022382.15, intron 1 of 3) -3037 ENSMUSG00000097209.2 ENSMUSG00000097209 ENSMUST00000180441 AU022754 antisense Interval_105375 chr3 85671965 85673147 + 0 NA exon (ENSMUSG00000051000.17, exon 8 of 11) protein_coding-exon (ENSMUSG00000051000.17, exon 8 of 11) 1432 ENSMUSG00000051000.17 ENSMUSG00000051000 ENSMUST00000094148 Fam160a1 protein_coding Interval_174661 chrX 162708409 162708831 + 0 NA Intergenic Intergenic 11008 ENSMUSG00000082571.1 ENSMUSG00000082571 ENSMUST00000122208 Gm8737 processed_pseudogene Interval_44832 chr13 48967173 48968829 + 0 NA promoter-TSS (ENSMUSG00000038014.7) protein_coding-promoter-TSS (ENSMUSG00000038014.7) 16 ENSMUSG00000038014.7 ENSMUSG00000038014 ENSMUST00000060805 Fam120a protein_coding Interval_105622 chr3 88177521 88178514 + 0 NA promoter-TSS (ENSMUSG00000096935.5) antisense-promoter-TSS (ENSMUSG00000096935.5) -311 ENSMUSG00000096935.5 ENSMUSG00000096935 ENSMUST00000200006 1700113A16Rik antisense Interval_34658 chr12 8445480 8445731 + 0 NA Intergenic Intergenic 9313 ENSMUSG00000112664.1 ENSMUSG00000112664 ENSMUST00000219269 Gm48076 TEC Interval_65947 chr16 30439766 30440232 + 0 NA Intergenic Intergenic -12589 ENSMUSG00000116960.1 ENSMUSG00000116960 ENSMUST00000231864 Gm49679 processed_pseudogene Interval_4003 chr1 66120607 66121228 + 0 NA Intergenic Intergenic 57952 ENSMUSG00000083289.1 ENSMUSG00000083289 ENSMUST00000118496 Gm8812 processed_pseudogene Interval_146745 chr7 49865358 49865984 + 0 NA Intergenic Intergenic -44628 ENSMUSG00000039728.15 ENSMUSG00000039728 ENSMUST00000107605 Slc6a5 protein_coding Interval_10244 chr1 167474409 167474649 + 0 NA Intergenic Intergenic -7749 ENSMUSG00000040485.5 ENSMUSG00000040485 ENSMUST00000036643 Lrrc52 protein_coding Interval_85938 chr19 33610931 33612478 + 0 NA intron (ENSMUSG00000024766.15, intron 1 of 10) protein_coding-intron (ENSMUSG00000024766.15, intron 1 of 10) 13548 ENSMUSG00000086812.2 ENSMUSG00000086812 ENSMUST00000124230 Gm8978 protein_coding Interval_45995 chr13 59856193 59856939 + 0 NA Intergenic Intergenic -17076 ENSMUSG00000114669.1 ENSMUSG00000114669 ENSMUST00000225895 Gm48384 lincRNA Interval_163090 chr9 15182039 15182844 + 0 NA Intergenic Intergenic 29344 ENSMUSG00000077384.1 ENSMUSG00000077384 ENSMUST00000104196 Gm22658 snRNA Interval_27717 chr11 69646735 69647746 + 0 NA intron (ENSMUSG00000018765.5, intron 1 of 3) protein_coding-intron (ENSMUSG00000018765.5, intron 7 of 16) 7087 ENSMUSG00000018765.5 ENSMUSG00000018765 ENSMUST00000125586 Fxr2 protein_coding Interval_74527 chr17 52956680 52956887 + 0 NA exon (ENSMUSG00000035580.10, exon 13 of 16) protein_coding-exon (ENSMUSG00000035580.10, exon 13 of 16) 6723 ENSMUSG00000035580.10 ENSMUSG00000035580 ENSMUST00000184279 Kcnh8 protein_coding Interval_95915 chr2 118363134 118363354 + 0 NA intron (ENSMUSG00000040133.2, intron 1 of 2) protein_coding-intron (ENSMUSG00000040133.2, intron 1 of 2) 10175 ENSMUSG00000040133.2 ENSMUSG00000040133 ENSMUST00000039160 Gpr176 protein_coding Interval_2829 chr1 46018142 46018782 + 0 NA Intergenic Intergenic -6442 ENSMUSG00000090682.4 ENSMUSG00000090682 ENSMUST00000182781 Gm3852 processed_pseudogene Interval_31855 chr11 103387313 103388553 + 0 NA intron (ENSMUSG00000034247.9, intron 4 of 11) protein_coding-intron (ENSMUSG00000034247.9, intron 4 of 11) 6835 ENSMUSG00000034247.9 ENSMUSG00000034247 ENSMUST00000184350 Plekhm1 protein_coding Interval_108167 chr3 122111392 122112375 + 0 NA intron (ENSMUSG00000028125.14, intron 15 of 49) protein_coding-intron (ENSMUSG00000028125.14, intron 15 of 49) 40736 ENSMUSG00000105351.1 ENSMUSG00000105351 ENSMUST00000198223 Gm43157 processed_pseudogene Interval_140699 chr6 120647366 120648400 + 0 NA Intergenic Intergenic -67707 ENSMUSG00000107580.1 ENSMUSG00000107580 ENSMUST00000204159 Gm44124 TEC Interval_104140 chr3 58992107 58992310 + 0 NA Intergenic Intergenic 5038 ENSMUSG00000059776.7 ENSMUSG00000059776 ENSMUST00000079761 Rpl13-ps6 processed_pseudogene Interval_151971 chr7 127887231 127888267 + 0 NA intron (ENSMUSG00000044139.12, intron 6 of 9) protein_coding-intron (ENSMUSG00000044139.12, intron 6 of 10) 3218 ENSMUSG00000044139.12 ENSMUSG00000044139 ENSMUST00000205300 Prss53 protein_coding Interval_101515 chr3 3370377 3371502 + 0 NA Intergenic Intergenic -103912 ENSMUSG00000103028.1 ENSMUSG00000103028 ENSMUST00000195392 Gm8747 processed_pseudogene Interval_19597 chr10 105155497 105156005 + 0 NA Intergenic Intergenic -12809 ENSMUSG00000103775.1 ENSMUSG00000103775 ENSMUST00000195090 Gm36997 TEC Interval_111041 chr4 11425179 11425356 + 0 NA Intergenic Intergenic -4503 ENSMUSG00000082255.1 ENSMUSG00000082255 ENSMUST00000119177 Gm11822 processed_pseudogene Interval_161225 chr8 118845665 118847032 + 0 NA intron (ENSMUSG00000031841.19, intron 6 of 8) protein_coding-intron (ENSMUSG00000031841.19, intron 4 of 13) 119448 ENSMUSG00000087707.1 ENSMUSG00000087707 ENSMUST00000157082 Gm22999 snoRNA Interval_63884 chr16 4251091 4251474 + 0 NA Intergenic Intergenic 20981 ENSMUSG00000089645.3 ENSMUSG00000089645 ENSMUST00000161633 Gm5766 transcribed_processed_pseudogene Interval_66270 chr16 32759806 32760499 + 0 NA exon (ENSMUSG00000079620.13, exon 7 of 27) protein_coding-exon (ENSMUSG00000079620.13, exon 7 of 27) -17385 ENSMUSG00000079620.13 ENSMUSG00000079620 ENSMUST00000131419 Muc4 protein_coding Interval_149960 chr7 103792747 103793110 + 0 NA Intergenic Intergenic -1107 ENSMUSG00000047535.11 ENSMUSG00000047535 ENSMUST00000183254 Olfr67 protein_coding Interval_16769 chr10 68050956 68052545 + 0 NA TTS (ENSMUSG00000037846.18) protein_coding-TTS (ENSMUSG00000037846.18) -25124 ENSMUSG00000086838.1 ENSMUSG00000086838 ENSMUST00000143555 Gm16212 antisense Interval_145573 chr7 35677317 35677577 + 0 NA Intergenic Intergenic 31118 ENSMUSG00000043671.14 ENSMUSG00000043671 ENSMUST00000124116 Dpy19l3 protein_coding Interval_123232 chr5 30780970 30781668 + 0 NA intron (ENSMUSG00000029168.14, intron 2 of 5) protein_coding-intron (ENSMUSG00000029168.14, intron 5 of 12) -6871 ENSMUSG00000029168.14 ENSMUSG00000029168 ENSMUST00000138625 Dpysl5 protein_coding Interval_83129 chr18 81847672 81847957 + 0 NA intron (ENSMUSG00000117892.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000117892.1, intron 1 of 2) 2202 ENSMUSG00000117892.1 ENSMUSG00000117892 ENSMUST00000237663 Gm30454 lincRNA Interval_144472 chr7 25345749 25346280 + 0 NA promoter-TSS (ENSMUSG00000045039.9) protein_coding-promoter-TSS (ENSMUSG00000045039.9) 33 ENSMUSG00000045039.9 ENSMUSG00000045039 ENSMUST00000153077 Megf8 protein_coding Interval_59584 chr15 55591709 55592072 + 0 NA intron (ENSMUSG00000022369.13, intron 13 of 16) protein_coding-intron (ENSMUSG00000022369.13, intron 13 of 21) -25697 ENSMUSG00000022369.13 ENSMUSG00000022369 ENSMUST00000166449 Mtbp protein_coding Interval_18478 chr10 86475125 86475389 + 0 NA intron (ENSMUSG00000059602.14, intron 1 of 6) protein_coding-intron (ENSMUSG00000059602.14, intron 1 of 13) 16640 ENSMUSG00000059602.14 ENSMUSG00000059602 ENSMUST00000139197 Syn3 protein_coding Interval_8312 chr1 137204827 137205178 + 0 NA Intergenic Intergenic 10645 ENSMUSG00000077207.1 ENSMUSG00000077207 ENSMUST00000104019 Gm25609 snRNA Interval_134290 chr6 24612520 24612840 + 0 NA Intergenic Intergenic 14918 ENSMUSG00000029683.7 ENSMUSG00000029683 ENSMUST00000031694 Lmod2 protein_coding Interval_67235 chr16 44632035 44632706 + 0 NA Intergenic Intergenic -73473 ENSMUSG00000022687.12 ENSMUSG00000022687 ENSMUST00000114634 Boc protein_coding Interval_140658 chr6 120344640 120345022 + 0 NA TTS (ENSMUSG00000030177.14) protein_coding-TTS (ENSMUSG00000030177.14) 12536 ENSMUSG00000030177.14 ENSMUSG00000030177 ENSMUST00000153435 Ccdc77 protein_coding Interval_171749 chr9 120697747 120698015 + 0 NA Intergenic Intergenic 8356 ENSMUSG00000111679.1 ENSMUSG00000111679 ENSMUST00000213340 Gm47063 TEC Interval_148027 chr7 78491517 78492295 + 0 NA intron (ENSMUSG00000059146.12, intron 3 of 3) protein_coding-intron (ENSMUSG00000059146.12, intron 3 of 16) 83326 ENSMUSG00000108390.1 ENSMUSG00000108390 ENSMUST00000206774 Gm39038 sense_intronic Interval_72544 chr17 30609407 30610181 + 0 NA intron (ENSMUSG00000024026.13, intron 1 of 2) protein_coding-intron (ENSMUSG00000024026.13, intron 1 of 6) 2738 ENSMUSG00000117749.1 ENSMUSG00000117749 ENSMUST00000236095 Gm50245 TEC Interval_164373 chr9 36462841 36463048 + 0 NA Intergenic Intergenic -12694 ENSMUSG00000090710.3 ENSMUSG00000090710 ENSMUST00000165591 Pate11 protein_coding Interval_146243 chr7 44938807 44939542 + 0 NA Intergenic Intergenic -15140 ENSMUSG00000059891.14 ENSMUSG00000059891 ENSMUST00000208475 Tsks protein_coding Interval_87399 chr19 48771715 48772401 + 0 NA intron (ENSMUSG00000063434.6, intron 8 of 15) protein_coding-intron (ENSMUSG00000063434.6, intron 19 of 26) -39078 ENSMUSG00000117930.1 ENSMUSG00000117930 ENSMUST00000236384 Gm50436 TEC Interval_166327 chr9 58355513 58356286 + 0 NA Intergenic Intergenic 14470 ENSMUSG00000036244.5 ENSMUSG00000036244 ENSMUST00000213847 Tbc1d21 protein_coding Interval_152554 chr7 134378009 134378844 + 0 NA intron (ENSMUSG00000030994.16, intron 1 of 3) protein_coding-intron (ENSMUSG00000030994.16, intron 1 of 3) 120558 ENSMUSG00000030994.16 ENSMUSG00000030994 ENSMUST00000205334 D7Ertd443e protein_coding Interval_103046 chr3 34718935 34719462 + 0 NA Intergenic Intergenic -2536 ENSMUSG00000105153.4 ENSMUSG00000105153 ENSMUST00000198364 Gm3143 lincRNA Interval_150025 chr7 105120240 105120442 + 0 NA intron (ENSMUSG00000095248.3, intron 2 of 2) protein_coding-intron (ENSMUSG00000095248.3, intron 2 of 3) 3505 ENSMUSG00000095248.3 ENSMUSG00000095248 ENSMUST00000098157 Olfr681 protein_coding Interval_113151 chr4 48641016 48641470 + 0 NA intron (ENSMUSG00000028347.14, intron 2 of 4) protein_coding-intron (ENSMUSG00000028347.14, intron 7 of 9) 4309 ENSMUSG00000028347.14 ENSMUSG00000028347 ENSMUST00000141720 Tmeff1 protein_coding Interval_16150 chr10 61062873 61063720 + 0 NA Intergenic Intergenic -11396 ENSMUSG00000093573.1 ENSMUSG00000093573 ENSMUST00000176406 Gm20610 lincRNA Interval_167309 chr9 67213316 67214827 + 0 NA TTS (ENSMUSG00000111556.1) lincRNA-TTS (ENSMUSG00000111556.1) 22655 ENSMUSG00000076379.2 ENSMUSG00000076379 ENSMUST00000102424 Mir190a miRNA Interval_143098 chr6 149329108 149329325 + 0 NA TTS (ENSMUSG00000032712.16) protein_coding-TTS (ENSMUSG00000032712.16) 17800 ENSMUSG00000032712.16 ENSMUSG00000032712 ENSMUST00000189837 Resf1 protein_coding Interval_69562 chr16 94253687 94255229 + 0 NA intron (ENSMUSG00000040820.16, intron 5 of 10) protein_coding-intron (ENSMUSG00000040820.16, intron 4 of 9) -8373 ENSMUSG00000040820.16 ENSMUSG00000040820 ENSMUST00000226249 Hlcs protein_coding Interval_113168 chr4 48840105 48840332 + 0 NA Intergenic Intergenic -56281 ENSMUSG00000077417.1 ENSMUSG00000077417 ENSMUST00000104229 Gm23746 snoRNA Interval_125859 chr5 75108046 75109309 + 0 NA promoter-TSS (ENSMUSG00000106900.1) processed_pseudogene-promoter-TSS (ENSMUSG00000106900.1) 42 ENSMUSG00000106900.1 ENSMUSG00000106900 ENSMUST00000202979 Gm2040 processed_pseudogene Interval_68799 chr16 86950576 86950984 + 0 NA Intergenic Intergenic 98480 ENSMUSG00000116555.1 ENSMUSG00000116555 ENSMUST00000231899 Gm38477 lincRNA Interval_94367 chr2 90536344 90536574 + 0 NA intron (ENSMUSG00000025314.16, intron 1 of 23) protein_coding-intron (ENSMUSG00000025314.16, intron 1 of 23) 44188 ENSMUSG00000025314.16 ENSMUSG00000025314 ENSMUST00000168621 Ptprj protein_coding Interval_152170 chr7 130368881 130369652 + 0 NA intron (ENSMUSG00000030849.18, intron 2 of 6) protein_coding-intron (ENSMUSG00000030849.18, intron 2 of 6) -14904 ENSMUSG00000082988.3 ENSMUSG00000082988 ENSMUST00000121836 Gm5903 processed_pseudogene Interval_40457 chr12 105002838 105003663 + 0 NA intron (ENSMUSG00000054150.12, intron 1 of 16) protein_coding-intron (ENSMUSG00000054150.12, intron 1 of 16) -4573 ENSMUSG00000054150.12 ENSMUSG00000054150 ENSMUST00000095439 Syne3 protein_coding Interval_70536 chr17 11744818 11745074 + 0 NA intron (ENSMUSG00000023826.16, intron 6 of 10) protein_coding-intron (ENSMUSG00000023826.16, intron 7 of 11) -12601 ENSMUSG00000104466.1 ENSMUSG00000104466 ENSMUST00000194203 Gm10513 TEC Interval_49770 chr13 114855713 114855917 + 0 NA intron (ENSMUSG00000015533.9, intron 20 of 29) protein_coding-intron (ENSMUSG00000015533.9, intron 20 of 29) 37521 ENSMUSG00000015536.14 ENSMUSG00000015536 ENSMUST00000164871 Mocs2 protein_coding Interval_118840 chr4 133982931 133983173 + 0 NA intron (ENSMUSG00000012117.13, intron 2 of 3) protein_coding-intron (ENSMUSG00000012117.13, intron 6 of 8) 13872 ENSMUSG00000012117.13 ENSMUSG00000012117 ENSMUST00000150729 Dhdds protein_coding Interval_5872 chr1 92854605 92855451 + 0 NA exon (ENSMUSG00000034220.7, exon 3 of 9) protein_coding-exon (ENSMUSG00000034220.7, exon 3 of 9) 4650 ENSMUSG00000065470.1 ENSMUSG00000065470 ENSMUST00000083536 Mir149 miRNA Interval_24757 chr11 36800818 36801223 + 0 NA intron (ENSMUSG00000049336.16, intron 2 of 28) protein_coding-intron (ENSMUSG00000049336.16, intron 2 of 28) 78138 ENSMUSG00000065173.1 ENSMUSG00000065173 ENSMUST00000083239 Gm22127 snRNA Interval_17789 chr10 80091318 80091502 + 0 NA intron (ENSMUSG00000035673.10, intron 1 of 11) protein_coding-intron (ENSMUSG00000035673.10, intron 1 of 31) 12960 ENSMUSG00000035673.10 ENSMUSG00000035673 ENSMUST00000217683 Sbno2 protein_coding Interval_152604 chr7 135100836 135101140 + 0 NA intron (ENSMUSG00000058325.6, intron 33 of 51) protein_coding-intron (ENSMUSG00000058325.6, intron 33 of 51) 30658 ENSMUSG00000077150.1 ENSMUSG00000077150 ENSMUST00000103962 Gm24581 snoRNA Interval_43215 chr13 25401663 25402257 + 0 NA Intergenic Intergenic 28167 ENSMUSG00000114427.1 ENSMUSG00000114427 ENSMUST00000223668 F830002E08Rik TEC Interval_55134 chr14 78510810 78512700 + 0 NA exon (ENSMUSG00000022016.17, exon 7 of 12) protein_coding-exon (ENSMUSG00000022016.17, exon 7 of 12) -7784 ENSMUSG00000022016.17 ENSMUSG00000022016 ENSMUST00000226416 Akap11 protein_coding Interval_12965 chr10 8795158 8795621 + 0 NA intron (ENSMUSG00000015305.6, intron 4 of 19) protein_coding-intron (ENSMUSG00000015305.6, intron 4 of 19) 28758 ENSMUSG00000065692.1 ENSMUSG00000065692 ENSMUST00000083758 Gm25410 snoRNA Interval_51548 chr14 30047899 30048462 + 0 NA intron (ENSMUSG00000015968.18, intron 45 of 48) protein_coding-intron (ENSMUSG00000015968.18, intron 45 of 48) 8334 ENSMUSG00000015968.18 ENSMUSG00000015968 ENSMUST00000223985 Cacna1d protein_coding Interval_2765 chr1 44480384 44481918 + 0 NA Intergenic Intergenic -16920 ENSMUSG00000101567.1 ENSMUSG00000101567 ENSMUST00000186385 Txn-ps1 processed_pseudogene Interval_99365 chr2 160313459 160313939 + 0 NA promoter-TSS (ENSMUSG00000074623.4) protein_coding-promoter-TSS (ENSMUSG00000074623.4) 20463 ENSMUSG00000074623.4 ENSMUSG00000074623 ENSMUST00000099127 Gm826 protein_coding Interval_15965 chr10 59720844 59721070 + 0 NA intron (ENSMUSG00000020111.15, intron 1 of 7) protein_coding-intron (ENSMUSG00000020111.15, intron 1 of 13) 12167 ENSMUSG00000090350.1 ENSMUSG00000090350 ENSMUST00000164702 Gm17148 processed_pseudogene Interval_149966 chr7 103866414 103867213 + 0 NA Intergenic Intergenic -13597 ENSMUSG00000052187.4 ENSMUSG00000052187 ENSMUST00000033229 Hbb-y protein_coding Interval_1486 chr1 24050661 24051171 + 0 NA TTS (ENSMUSG00000026153.15) protein_coding-TTS (ENSMUSG00000026153.15) 35610 ENSMUSG00000026153.15 ENSMUSG00000026153 ENSMUST00000185525 Fam135a protein_coding Interval_108955 chr3 133577423 133577684 + 0 NA intron (ENSMUSG00000105085.1, intron 1 of 2) antisense-intron (ENSMUSG00000105085.1, intron 1 of 2) 2348 ENSMUSG00000105595.1 ENSMUSG00000105595 ENSMUST00000197855 Gm49316 processed_pseudogene Interval_128341 chr5 112634648 112635406 + 0 NA Intergenic Intergenic -5308 ENSMUSG00000105735.1 ENSMUSG00000105735 ENSMUST00000195895 4933415J04Rik TEC Interval_104329 chr3 63475687 63476688 + 0 NA Intergenic Intergenic 7692 ENSMUSG00000103476.1 ENSMUSG00000103476 ENSMUST00000192926 Strit1 protein_coding Interval_155752 chr8 36774153 36774517 + 0 NA intron (ENSMUSG00000031523.16, intron 4 of 17) protein_coding-intron (ENSMUSG00000031523.16, intron 4 of 17) 178101 ENSMUSG00000031523.16 ENSMUSG00000031523 ENSMUST00000179501 Dlc1 protein_coding Interval_77565 chr17 91748565 91748784 + 0 NA Intergenic Intergenic 33763 ENSMUSG00000117555.1 ENSMUSG00000117555 ENSMUST00000234681 Gm49992 processed_pseudogene Interval_119598 chr4 138642263 138642451 + 0 NA Intergenic Intergenic -35827 ENSMUSG00000028753.12 ENSMUSG00000028753 ENSMUST00000133319 Vwa5b1 protein_coding Interval_137991 chr6 84018768 84019840 + 0 NA promoter-TSS (ENSMUSG00000033788.15) protein_coding-promoter-TSS (ENSMUSG00000033788.15) -81 ENSMUSG00000033788.15 ENSMUSG00000033788 ENSMUST00000128965 Dysf protein_coding Interval_107076 chr3 103361059 103362096 + 0 NA Intergenic Intergenic 29434 ENSMUSG00000104925.1 ENSMUSG00000104925 ENSMUST00000198850 Gm43061 sense_intronic Interval_93812 chr2 77146205 77147759 + 0 NA intron (ENSMUSG00000044033.16, intron 2 of 23) protein_coding-intron (ENSMUSG00000044033.16, intron 2 of 11) 52445 ENSMUSG00000042272.17 ENSMUSG00000042272 ENSMUST00000139021 Sestd1 protein_coding Interval_145018 chr7 29457831 29458244 + 0 NA intron (ENSMUSG00000030583.16, intron 1 of 2) protein_coding-intron (ENSMUSG00000030583.16, intron 2 of 22) -66506 ENSMUSG00000074224.3 ENSMUSG00000074224 ENSMUST00000098602 4932431P20Rik transcribed_unitary_pseudogene Interval_15895 chr10 59044023 59044267 + 0 NA intron (ENSMUSG00000037990.18, intron 3 of 9) protein_coding-intron (ENSMUSG00000037990.18, intron 3 of 3) 78602 ENSMUSG00000098653.1 ENSMUSG00000098653 ENSMUST00000183751 Gm27672 miRNA Interval_139236 chr6 97424732 97424925 + 0 NA intron (ENSMUSG00000030064.16, intron 2 of 7) protein_coding-intron (ENSMUSG00000030064.16, intron 1 of 22) -24922 ENSMUSG00000108185.1 ENSMUSG00000108185 ENSMUST00000204326 Gm19653 processed_pseudogene Interval_167846 chr9 73043927 73045374 + 0 NA promoter-TSS (ENSMUSG00000032202.11) protein_coding-promoter-TSS (ENSMUSG00000032202.11) -334 ENSMUSG00000032202.11 ENSMUSG00000032202 ENSMUST00000184032 Rab27a protein_coding Interval_76492 chr17 80569603 80570158 + 0 NA intron (ENSMUSG00000033966.8, intron 1 of 9) protein_coding-intron (ENSMUSG00000033966.8, intron 1 of 9) 7933 ENSMUSG00000033966.8 ENSMUSG00000033966 ENSMUST00000234349 Cdkl4 protein_coding Interval_126573 chr5 90351540 90351882 + 0 NA intron (ENSMUSG00000055204.15, intron 1 of 26) protein_coding-intron (ENSMUSG00000055204.15, intron 1 of 33) 14474 ENSMUSG00000055204.15 ENSMUSG00000055204 ENSMUST00000202226 Ankrd17 protein_coding Interval_57052 chr15 5151892 5153007 + 0 NA intron (ENSMUSG00000050697.9, intron 1 of 8) protein_coding-intron (ENSMUSG00000050697.9, intron 1 of 8) 8558 ENSMUSG00000050697.9 ENSMUSG00000050697 ENSMUST00000228218 Prkaa1 protein_coding Interval_94639 chr2 92929941 92930198 + 0 NA intron (ENSMUSG00000027220.2, intron 1 of 5) protein_coding-intron (ENSMUSG00000027220.2, intron 1 of 5) 14971 ENSMUSG00000027220.2 ENSMUSG00000027220 ENSMUST00000028648 Syt13 protein_coding Interval_44468 chr13 45024887 45025521 + 0 NA Intergenic Intergenic 1151 ENSMUSG00000065656.1 ENSMUSG00000065656 ENSMUST00000083722 Gm23104 snRNA Interval_16779 chr10 68107578 68108196 + 0 NA intron (ENSMUSG00000019947.10, intron 8 of 9) protein_coding-intron (ENSMUSG00000019947.10, intron 9 of 10) -81261 ENSMUSG00000086838.1 ENSMUSG00000086838 ENSMUST00000143555 Gm16212 antisense Interval_100554 chr2 170103338 170104127 + 0 NA Intergenic Intergenic 44371 ENSMUSG00000052056.14 ENSMUSG00000052056 ENSMUST00000149318 Zfp217 protein_coding Interval_46175 chr13 62226864 62227252 + 0 NA intron (ENSMUSG00000074867.4, intron 1 of 3) protein_coding-intron (ENSMUSG00000074867.4, intron 3 of 4) -45703 ENSMUSG00000113081.1 ENSMUSG00000113081 ENSMUST00000221763 Gm3333 transcribed_processed_pseudogene Interval_32914 chr11 113074312 113075071 + 0 NA intron (ENSMUSG00000087259.7, intron 1 of 3) lincRNA-intron (ENSMUSG00000087259.7, intron 1 of 2) 98386 ENSMUSG00000087259.7 ENSMUSG00000087259 ENSMUST00000150712 2610035D17Rik lincRNA Interval_28046 chr11 72446300 72447957 + 0 NA intron (ENSMUSG00000040463.16, intron 12 of 23) protein_coding-intron (ENSMUSG00000040463.16, intron 14 of 25) 5771 ENSMUSG00000040463.16 ENSMUSG00000040463 ENSMUST00000144923 Mybbp1a protein_coding Interval_85023 chr19 21630133 21631294 + 0 NA promoter-TSS (ENSMUSG00000035171.9) protein_coding-promoter-TSS (ENSMUSG00000035171.9) 21897 ENSMUSG00000035171.9 ENSMUSG00000035171 ENSMUST00000178781 1110059E24Rik protein_coding Interval_68760 chr16 85678368 85678725 + 0 NA Intergenic Intergenic 34294 ENSMUSG00000116972.1 ENSMUSG00000116972 ENSMUST00000231765 Gm6278 processed_pseudogene Interval_151780 chr7 126612567 126613811 + 0 NA Intergenic Intergenic 17672 ENSMUSG00000030717.9 ENSMUSG00000030717 ENSMUST00000191413 Nupr1 protein_coding Interval_11153 chr1 179702851 179704304 + 0 NA intron (ENSMUSG00000087236.3, intron 16 of 22) protein_coding-intron (ENSMUSG00000087236.3, intron 16 of 22) -3297 ENSMUSG00000087236.3 ENSMUSG00000087236 ENSMUST00000223392 Kif28 protein_coding Interval_52934 chr14 52118658 52119600 + 0 NA intron (ENSMUSG00000057132.16, intron 1 of 1) protein_coding-intron (ENSMUSG00000057132.16, intron 3 of 24) -15136 ENSMUSG00000060373.15 ENSMUSG00000060373 ENSMUST00000228786 Hnrnpc protein_coding Interval_109171 chr3 137547071 137548302 + 0 NA Intergenic Intergenic 4936 ENSMUSG00000055138.10 ENSMUSG00000055138 ENSMUST00000198629 Gm4861 lincRNA Interval_141576 chr6 129544079 129544623 + 0 NA Intergenic Intergenic 4130 ENSMUSG00000107997.1 ENSMUSG00000107997 ENSMUST00000204323 Gm44243 TEC Interval_149173 chr7 95887917 95888257 + 0 NA Intergenic Intergenic 25299 ENSMUSG00000108628.1 ENSMUSG00000108628 ENSMUST00000205327 Gm5037 processed_pseudogene Interval_156423 chr8 48035654 48036017 + 0 NA Intergenic Intergenic -26702 ENSMUSG00000110624.1 ENSMUSG00000110624 ENSMUST00000212073 Gm32052 lincRNA Interval_130867 chr5 132757738 132758196 + 0 NA Intergenic Intergenic -38186 ENSMUSG00000103500.1 ENSMUSG00000103500 ENSMUST00000192042 Gm38373 TEC Interval_130116 chr5 124382146 124383030 + 0 NA intron (ENSMUSG00000038095.15, intron 25 of 31) protein_coding-intron (ENSMUSG00000038095.15, intron 25 of 31) -19506 ENSMUSG00000029394.11 ENSMUSG00000029394 ENSMUST00000196910 Cdk2ap1 protein_coding Interval_127797 chr5 107899350 107901376 + 0 NA promoter-TSS (ENSMUSG00000058558.12) protein_coding-promoter-TSS (ENSMUSG00000058558.12) -511 ENSMUSG00000058558.12 ENSMUSG00000058558 ENSMUST00000151767 Rpl5 protein_coding Interval_130400 chr5 127322547 127323190 + 0 NA intron (ENSMUSG00000034324.16, intron 1 of 8) protein_coding-intron (ENSMUSG00000034324.16, intron 1 of 8) 13851 ENSMUSG00000104971.1 ENSMUSG00000104971 ENSMUST00000196548 9430087B13Rik TEC Interval_33696 chr11 117955279 117956134 + 0 NA Intergenic Intergenic 13745 ENSMUSG00000053113.3 ENSMUSG00000053113 ENSMUST00000132295 Socs3 protein_coding Interval_135343 chr6 38516177 38516509 + 0 NA intron (ENSMUSG00000038538.17, intron 1 of 1) protein_coding-intron (ENSMUSG00000038538.17, intron 1 of 1) 9018 ENSMUSG00000098285.1 ENSMUSG00000098285 ENSMUST00000183689 Mir7670 miRNA Interval_36308 chr12 40994903 40996590 + 0 NA Intergenic Intergenic 24506 ENSMUSG00000114130.1 ENSMUSG00000114130 ENSMUST00000222200 Gm18954 processed_pseudogene Interval_163635 chr9 22849006 22849740 + 0 NA intron (ENSMUSG00000035919.16, intron 21 of 22) protein_coding-intron (ENSMUSG00000035919.16, intron 20 of 21) -76538 ENSMUSG00000098940.1 ENSMUSG00000098940 ENSMUST00000184937 Gm27639 snRNA Interval_164090 chr9 31418125 31419522 + 0 NA intron (ENSMUSG00000042185.14, intron 23 of 25) protein_coding-intron (ENSMUSG00000042185.14, intron 23 of 25) 15884 ENSMUSG00000111548.1 ENSMUSG00000111548 ENSMUST00000213951 Gm8162 processed_pseudogene Interval_146258 chr7 45015673 45016516 + 0 NA promoter-TSS (ENSMUSG00000038406.17) protein_coding-promoter-TSS (ENSMUSG00000038406.17) -1690 ENSMUSG00000038406.17 ENSMUSG00000038406 ENSMUST00000209521 Scaf1 protein_coding Interval_68245 chr16 70915118 70915314 + 0 NA Intergenic Intergenic -39072 ENSMUSG00000116800.1 ENSMUSG00000116800 ENSMUST00000232603 Gm29823 lincRNA Interval_64604 chr16 13628311 13628810 + 0 NA intron (ENSMUSG00000022685.9, intron 16 of 23) protein_coding-intron (ENSMUSG00000022685.9, intron 15 of 23) 39578 ENSMUSG00000022685.9 ENSMUSG00000022685 ENSMUST00000229251 Parn protein_coding Interval_26837 chr11 60964728 60964981 + 0 NA Intergenic Intergenic 32800 ENSMUSG00000018932.9 ENSMUSG00000018932 ENSMUST00000137609 Map2k3 protein_coding Interval_12472 chr1 193778327 193778565 + 0 NA Intergenic Intergenic -88563 ENSMUSG00000104182.1 ENSMUSG00000104182 ENSMUST00000194272 Gm21362 processed_pseudogene Interval_170444 chr9 108023100 108024042 + 0 NA promoter-TSS (ENSMUSG00000032594.11) protein_coding-promoter-TSS (ENSMUSG00000032594.11) -6963 ENSMUSG00000102540.1 ENSMUSG00000102540 ENSMUST00000191858 Gm38134 antisense Interval_62835 chr15 97332384 97333655 + 0 NA intron (ENSMUSG00000044250.8, intron 3 of 5) protein_coding-intron (ENSMUSG00000044250.8, intron 3 of 5) -28183 ENSMUSG00000044250.8 ENSMUSG00000044250 ENSMUST00000226495 Pced1b protein_coding Interval_147978 chr7 76154985 76155442 + 0 NA Intergenic Intergenic -74674 ENSMUSG00000025754.11 ENSMUSG00000025754 ENSMUST00000107442 Agbl1 protein_coding Interval_64554 chr16 13255975 13257299 + 0 NA intron (ENSMUSG00000009569.14, intron 1 of 4) protein_coding-intron (ENSMUSG00000009569.14, intron 1 of 16) -101784 ENSMUSG00000009569.14 ENSMUSG00000009569 ENSMUST00000149359 Mrtfb protein_coding Interval_2999 chr1 52008226 52009635 + 0 NA intron (ENSMUSG00000062939.11, intron 1 of 4) protein_coding-intron (ENSMUSG00000062939.11, intron 1 of 23) -67669 ENSMUSG00000072324.4 ENSMUSG00000072324 ENSMUST00000097103 Gm8420 processed_pseudogene Interval_174362 chrX 150127846 150128771 + 0 NA Intergenic Intergenic 44779 ENSMUSG00000094767.1 ENSMUSG00000094767 ENSMUST00000118183 Gm8402 processed_pseudogene Interval_67991 chr16 62813174 62813405 + 0 NA intron (ENSMUSG00000022911.11, intron 2 of 3) protein_coding-intron (ENSMUSG00000022911.11, intron 3 of 9) -1387 ENSMUSG00000047854.5 ENSMUSG00000047854 ENSMUST00000055557 Stx19 protein_coding Interval_47017 chr13 74384085 74384815 + 0 NA intron (ENSMUSG00000069184.4, intron 1 of 4) protein_coding-intron (ENSMUSG00000069184.4, intron 1 of 4) -2251 ENSMUSG00000113315.1 ENSMUSG00000113315 ENSMUST00000223306 Gm8227 processed_pseudogene Interval_3913 chr1 64736122 64736312 + 0 NA promoter-TSS (ENSMUSG00000102140.1) TEC-promoter-TSS (ENSMUSG00000102140.1) -23 ENSMUSG00000102140.1 ENSMUSG00000102140 ENSMUST00000194323 Gm38058 TEC Interval_141534 chr6 128961954 128963252 + 0 NA intron (ENSMUSG00000085786.1, intron 1 of 1) protein_coding-intron (ENSMUSG00000000248.16, intron 2 of 6) -8658 ENSMUSG00000000248.16 ENSMUSG00000000248 ENSMUST00000075789 Clec2g protein_coding Interval_131449 chr5 137301168 137302412 + 0 NA TTS (ENSMUSG00000037364.12) protein_coding-TTS (ENSMUSG00000037364.12) 524 ENSMUSG00000037364.12 ENSMUSG00000037364 ENSMUST00000197484 Srrt protein_coding Interval_38742 chr12 81787156 81787503 + 0 NA Intergenic Intergenic 5971 ENSMUSG00000113303.1 ENSMUSG00000113303 ENSMUST00000221909 4930423D22Rik bidirectional_promoter_lncRNA Interval_163884 chr9 27564083 27564805 + 0 NA Intergenic Intergenic 10964 ENSMUSG00000111694.1 ENSMUSG00000111694 ENSMUST00000214666 Gm48901 lincRNA Interval_37587 chr12 70102612 70103891 + 0 NA promoter-TSS (ENSMUSG00000021068.17) protein_coding-promoter-TSS (ENSMUSG00000021068.17) -10323 ENSMUSG00000114099.1 ENSMUSG00000114099 ENSMUST00000221641 Gm48695 bidirectional_promoter_lncRNA Interval_144026 chr7 19036851 19038162 + 0 NA intron (ENSMUSG00000023118.15, intron 9 of 22) protein_coding-intron (ENSMUSG00000023118.15, intron 8 of 26) 13086 ENSMUSG00000023118.15 ENSMUSG00000023118 ENSMUST00000131230 Sympk protein_coding Interval_41015 chr12 110629717 110630266 + 0 NA exon (ENSMUSG00000018707.13, exon 23 of 77) protein_coding-exon (ENSMUSG00000018707.13, exon 23 of 77) -10533 ENSMUSG00000018707.13 ENSMUSG00000018707 ENSMUST00000166323 Dync1h1 protein_coding Interval_55995 chr14 103770899 103771819 + 0 NA Intergenic Intergenic -71917 ENSMUSG00000089707.1 ENSMUSG00000089707 ENSMUST00000160117 Slain1os antisense Interval_170958 chr9 113280383 113280624 + 0 NA Intergenic Intergenic -7204 ENSMUSG00000111022.1 ENSMUSG00000111022 ENSMUST00000217623 Gm36367 lincRNA Interval_8662 chr1 146497357 146498997 + 0 NA intron (ENSMUSG00000035131.14, intron 1 of 2) protein_coding-intron (ENSMUSG00000035131.14, intron 1 of 7) 490 ENSMUSG00000035131.14 ENSMUSG00000035131 ENSMUST00000125331 Brinp3 protein_coding Interval_22993 chr11 18576462 18577444 + 0 NA TTS (ENSMUSG00000081101.1) processed_pseudogene-TTS (ENSMUSG00000081101.1) 1526 ENSMUSG00000081101.1 ENSMUSG00000081101 ENSMUST00000118819 Gm12024 processed_pseudogene Interval_168172 chr9 77750002 77751354 + 0 NA Intergenic Intergenic -15464 ENSMUSG00000032350.9 ENSMUSG00000032350 ENSMUST00000216848 Gclc protein_coding Interval_132501 chr5 145575418 145576292 + 0 NA intron (ENSMUSG00000075552.4, intron 4 of 12) protein_coding-intron (ENSMUSG00000075552.4, intron 4 of 12) 8875 ENSMUSG00000075552.4 ENSMUSG00000075552 ENSMUST00000075837 Cyp3a41b protein_coding Interval_144812 chr7 28392249 28393457 + 0 NA promoter-TSS (ENSMUSG00000003437.14) protein_coding-promoter-TSS (ENSMUSG00000003437.14) -145 ENSMUSG00000003444.8 ENSMUSG00000003444 ENSMUST00000003536 Med29 protein_coding Interval_127764 chr5 107532345 107532593 + 0 NA intron (ENSMUSG00000106631.2, intron 1 of 5) protein_coding-intron (ENSMUSG00000106631.2, intron 1 of 3) -2242 ENSMUSG00000089798.10 ENSMUSG00000089798 ENSMUST00000162591 1700028K03Rik protein_coding Interval_94358 chr2 90480301 90480705 + 0 NA intron (ENSMUSG00000085471.1, intron 1 of 1) antisense-intron (ENSMUSG00000085471.1, intron 2 of 2) 1253 ENSMUSG00000085471.1 ENSMUSG00000085471 ENSMUST00000126953 4933423P22Rik antisense Interval_24908 chr11 41126446 41126659 + 0 NA Intergenic Intergenic -15211 ENSMUSG00000084129.1 ENSMUSG00000084129 ENSMUST00000119350 Hmgb1-ps1 processed_pseudogene Interval_51483 chr14 28181288 28181760 + 0 NA intron (ENSMUSG00000040640.11, intron 13 of 15) protein_coding-intron (ENSMUSG00000040640.11, intron 13 of 15) -234473 ENSMUSG00000114503.1 ENSMUSG00000114503 ENSMUST00000225453 Gm20242 TEC Interval_20908 chr10 121909727 121910176 + 0 NA intron (ENSMUSG00000020121.15, intron 3 of 3) protein_coding-intron (ENSMUSG00000020121.15, intron 3 of 21) -77893 ENSMUSG00000112596.1 ENSMUSG00000112596 ENSMUST00000218664 Gm48804 TEC Interval_6528 chr1 114641225 114642567 + 0 NA Intergenic Intergenic 577867 ENSMUSG00000101687.1 ENSMUSG00000101687 ENSMUST00000185902 Gm4854 processed_pseudogene Interval_121542 chr5 3323301 3324814 + 0 NA Intergenic Intergenic 53738 ENSMUSG00000106658.1 ENSMUSG00000106658 ENSMUST00000197473 Gm36548 lincRNA Interval_140416 chr6 117948727 117949414 + 0 NA Intergenic Intergenic -13117 ENSMUSG00000004988.9 ENSMUSG00000004988 ENSMUST00000203842 Fxyd4 protein_coding Interval_125811 chr5 74433740 74434033 + 0 NA intron (ENSMUSG00000062110.14, intron 4 of 7) protein_coding-intron (ENSMUSG00000062110.14, intron 4 of 8) -2781 ENSMUSG00000106992.1 ENSMUSG00000106992 ENSMUST00000202001 Gm43167 TEC Interval_69536 chr16 94094299 94095278 + 0 NA intron (ENSMUSG00000062713.8, intron 2 of 10) protein_coding-intron (ENSMUSG00000062713.8, intron 2 of 10) 9857 ENSMUSG00000062713.8 ENSMUSG00000062713 ENSMUST00000231295 Sim2 protein_coding Interval_51395 chr14 27202082 27202330 + 0 NA intron (ENSMUSG00000021895.10, intron 3 of 13) protein_coding-intron (ENSMUSG00000021895.10, intron 3 of 13) -8191 ENSMUSG00000114349.1 ENSMUSG00000114349 ENSMUST00000225776 Gm7591 processed_pseudogene Interval_107792 chr3 115153049 115153781 + 0 NA Intergenic Intergenic 18634 ENSMUSG00000106510.1 ENSMUSG00000106510 ENSMUST00000198707 Gm18429 processed_pseudogene Interval_10100 chr1 165788649 165789667 + 0 NA exon (ENSMUSG00000089829.2, exon 3 of 3) processed_transcript-exon (ENSMUSG00000089829.2, exon 3 of 3) 477 ENSMUSG00000005763.15 ENSMUSG00000005763 ENSMUST00000162411 Cd247 protein_coding Interval_124201 chr5 40371284 40371654 + 0 NA Intergenic Intergenic 34460 ENSMUSG00000089393.1 ENSMUSG00000089393 ENSMUST00000158768 Gm23022 snRNA Interval_26471 chr11 58045050 58046612 + 0 NA intron (ENSMUSG00000037331.15, intron 8 of 18) protein_coding-intron (ENSMUSG00000037331.15, intron 8 of 18) 36767 ENSMUSG00000037331.15 ENSMUSG00000037331 ENSMUST00000140500 Larp1 protein_coding Interval_111432 chr4 21600417 21600681 + 0 NA Intergenic Intergenic -25831 ENSMUSG00000083654.1 ENSMUSG00000083654 ENSMUST00000118187 Gm11875 processed_pseudogene Interval_165458 chr9 48313445 48314951 + 0 NA intron (ENSMUSG00000044229.9, intron 2 of 8) protein_coding-intron (ENSMUSG00000044229.9, intron 1 of 10) 26656 ENSMUSG00000032028.15 ENSMUSG00000032028 ENSMUST00000142667 Nxpe2 protein_coding Interval_92461 chr2 59851732 59851941 + 0 NA TTS (ENSMUSG00000026988.15) protein_coding-TTS (ENSMUSG00000026988.15) 10890 ENSMUSG00000026988.15 ENSMUSG00000026988 ENSMUST00000131285 Wdsub1 protein_coding Interval_89366 chr2 19919089 19920309 + 0 NA intron (ENSMUSG00000036617.17, intron 1 of 7) protein_coding-intron (ENSMUSG00000036617.17, intron 1 of 7) -15164 ENSMUSG00000065644.1 ENSMUSG00000065644 ENSMUST00000083710 Gm25859 snoRNA Interval_22783 chr11 15479372 15480227 + 0 NA Intergenic Intergenic -2507 ENSMUSG00000083292.1 ENSMUSG00000083292 ENSMUST00000122400 Gm12010 processed_pseudogene Interval_43071 chr13 23595017 23596288 + 0 NA intron (ENSMUSG00000047246.7, intron 1 of 1) protein_coding-intron (ENSMUSG00000047246.7, intron 1 of 1) 14054 ENSMUSG00000061482.7 ENSMUSG00000061482 ENSMUST00000102968 H4c4 protein_coding Interval_28421 chr11 75767276 75767494 + 0 NA Intergenic Intergenic 15781 ENSMUSG00000020849.13 ENSMUSG00000020849 ENSMUST00000155057 Ywhae protein_coding Interval_37078 chr12 57505261 57505848 + 0 NA Intergenic Intergenic 15070 ENSMUSG00000084793.1 ENSMUSG00000084793 ENSMUST00000146126 Gm2568 processed_pseudogene Interval_102176 chr3 19215591 19217156 + 0 NA TTS (ENSMUSG00000027601.13) protein_coding-TTS (ENSMUSG00000027601.13) -11407 ENSMUSG00000087108.1 ENSMUSG00000087108 ENSMUST00000141455 Gm16093 antisense Interval_106651 chr3 98135388 98137111 + 0 NA intron (ENSMUSG00000027878.11, intron 25 of 33) protein_coding-intron (ENSMUSG00000027878.11, intron 25 of 33) 14661 ENSMUSG00000106427.1 ENSMUSG00000106427 ENSMUST00000200084 Gm42820 TEC Interval_1885 chr1 34289380 34289703 + 0 NA exon (ENSMUSG00000026131.20, exon 86 of 98) protein_coding-exon (ENSMUSG00000026131.20, exon 86 of 98) -18413 ENSMUSG00000103001.1 ENSMUSG00000103001 ENSMUST00000194920 A930005N03Rik TEC Interval_120892 chr4 151366639 151367733 + 0 NA intron (ENSMUSG00000014592.21, intron 5 of 24) protein_coding-intron (ENSMUSG00000014592.21, intron 5 of 23) -9284 ENSMUSG00000085593.1 ENSMUSG00000085593 ENSMUST00000129097 4930589P08Rik antisense Interval_132439 chr5 144914936 144915373 + 0 NA intron (ENSMUSG00000038780.14, intron 1 of 18) protein_coding-intron (ENSMUSG00000038780.14, intron 1 of 17) -17160 ENSMUSG00000038780.14 ENSMUSG00000038780 ENSMUST00000198621 Smurf1 protein_coding Interval_132656 chr5 146982973 146983670 + 0 NA Intergenic Intergenic -19521 ENSMUSG00000016510.11 ENSMUSG00000016510 ENSMUST00000140526 Mtif3 protein_coding Interval_141168 chr6 125377793 125378818 + 0 NA intron (ENSMUSG00000038167.6, intron 3 of 16) protein_coding-intron (ENSMUSG00000038167.6, intron 3 of 16) 2488 ENSMUSG00000038167.6 ENSMUSG00000038167 ENSMUST00000042647 Plekhg6 protein_coding Interval_144232 chr7 23423292 23424351 + 0 NA intron (ENSMUSG00000015721.18, intron 8 of 13) protein_coding-intron (ENSMUSG00000015721.18, intron 9 of 15) 5937 ENSMUSG00000015721.18 ENSMUSG00000015721 ENSMUST00000207536 Nlrp5 protein_coding Interval_98857 chr2 155612422 155614039 + 0 NA exon (ENSMUSG00000074652.3, exon 3 of 42) protein_coding-exon (ENSMUSG00000074652.3, exon 3 of 42) -9650 ENSMUSG00000076312.1 ENSMUSG00000076312 ENSMUST00000102357 Mir499 miRNA Interval_174239 chrX 140505639 140506213 + 0 NA Intergenic Intergenic 42603 ENSMUSG00000031431.13 ENSMUSG00000031431 ENSMUST00000152048 Tsc22d3 protein_coding Interval_150490 chr7 111140243 111140790 + 0 NA Intergenic Intergenic -17832 ENSMUSG00000110424.1 ENSMUSG00000110424 ENSMUST00000210340 1700012D14Rik processed_transcript Interval_2708 chr1 43698715 43698994 + 0 NA Intergenic Intergenic -31748 ENSMUSG00000026051.8 ENSMUSG00000026051 ENSMUST00000027217 Ecrg4 protein_coding Interval_68691 chr16 84772608 84774768 + 0 NA promoter-TSS (ENSMUSG00000053062.16) protein_coding-promoter-TSS (ENSMUSG00000053062.16) -19870 ENSMUSG00000053062.16 ENSMUSG00000053062 ENSMUST00000138054 Jam2 protein_coding Interval_105285 chr3 84581956 84583283 + 0 NA promoter-TSS (ENSMUSG00000074513.9) protein_coding-promoter-TSS (ENSMUSG00000074513.9) 6 ENSMUSG00000074513.9 ENSMUSG00000074513 ENSMUST00000143514 Arfip1 protein_coding Interval_100980 chr2 173789646 173790073 + 0 NA Intergenic Intergenic 21659 ENSMUSG00000054455.5 ENSMUSG00000054455 ENSMUST00000154306 Vapb protein_coding Interval_37539 chr12 69693455 69694308 + 0 NA intron (ENSMUSG00000020988.9, intron 9 of 9) protein_coding-intron (ENSMUSG00000020988.9, intron 9 of 9) 30892 ENSMUSG00000020988.9 ENSMUSG00000020988 ENSMUST00000223387 L2hgdh protein_coding Interval_2123 chr1 36580099 36581136 + 0 NA intron (ENSMUSG00000046337.17, intron 3 of 4) protein_coding-intron (ENSMUSG00000046337.17, intron 11 of 14) 19815 ENSMUSG00000046337.17 ENSMUSG00000046337 ENSMUST00000114981 Fam178b protein_coding Interval_88542 chr2 5957807 5959373 + 0 NA intron (ENSMUSG00000043241.14, intron 2 of 21) protein_coding-intron (ENSMUSG00000043241.14, intron 2 of 21) -46754 ENSMUSG00000025815.13 ENSMUSG00000025815 ENSMUST00000151649 Dhtkd1 protein_coding Interval_22722 chr11 13962079 13962284 + 0 NA Intergenic Intergenic -199898 ENSMUSG00000081631.1 ENSMUSG00000081631 ENSMUST00000121451 Gm12005 processed_pseudogene Interval_110741 chr4 7869478 7869988 + 0 NA Intergenic Intergenic 48817 ENSMUSG00000094771.1 ENSMUSG00000094771 ENSMUST00000179446 Gm23860 snoRNA Interval_68299 chr16 72709292 72709670 + 0 NA intron (ENSMUSG00000022883.11, intron 1 of 1) protein_coding-intron (ENSMUSG00000022883.11, intron 1 of 28) -266868 ENSMUSG00000022883.11 ENSMUSG00000022883 ENSMUST00000232432 Robo1 protein_coding Interval_79770 chr18 35040511 35040738 + 0 NA intron (ENSMUSG00000118380.1, intron 3 of 3) processed_transcript-intron (ENSMUSG00000118380.1, intron 4 of 5) 46999 ENSMUSG00000117727.1 ENSMUSG00000117727 ENSMUST00000238134 Gm3587 lincRNA Interval_51135 chr14 24036139 24036408 + 0 NA Intergenic Intergenic -21782 ENSMUSG00000063142.15 ENSMUSG00000063142 ENSMUST00000190339 Kcnma1 protein_coding Interval_58717 chr15 37310522 37310821 + 0 NA intron (ENSMUSG00000022286.16, intron 8 of 9) protein_coding-intron (ENSMUSG00000022286.16, intron 8 of 15) 22138 ENSMUSG00000089811.2 ENSMUSG00000089811 ENSMUST00000159341 Gm16138 processed_pseudogene Interval_44192 chr13 41807189 41807760 + 0 NA intron (ENSMUSG00000058022.14, intron 3 of 4) protein_coding-intron (ENSMUSG00000058022.14, intron 4 of 6) 6691 ENSMUSG00000085759.1 ENSMUSG00000085759 ENSMUST00000154159 1700061E18Rik antisense Interval_62479 chr15 93368664 93370142 + 0 NA Intergenic Intergenic 24719 ENSMUSG00000088454.1 ENSMUSG00000088454 ENSMUST00000157829 Gm26371 snRNA Interval_132094 chr5 142744304 142744522 + 0 NA intron (ENSMUSG00000039477.16, intron 13 of 24) protein_coding-intron (ENSMUSG00000039477.16, intron 13 of 24) 21609 ENSMUSG00000039477.16 ENSMUSG00000039477 ENSMUST00000198181 Tnrc18 protein_coding Interval_43527 chr13 32764594 32764823 + 0 NA intron (ENSMUSG00000044951.17, intron 2 of 14) protein_coding-intron (ENSMUSG00000044951.17, intron 1 of 11) 6506 ENSMUSG00000098788.1 ENSMUSG00000098788 ENSMUST00000183530 Gm27342 snRNA Interval_17712 chr10 79704066 79704923 + 0 NA promoter-TSS (ENSMUSG00000023175.15) protein_coding-promoter-TSS (ENSMUSG00000023175.15) -904 ENSMUSG00000065220.1 ENSMUSG00000065220 ENSMUST00000083286 Gm25794 snRNA Interval_58354 chr15 33102794 33103748 + 0 NA intron (ENSMUSG00000039007.10, intron 1 of 3) protein_coding-intron (ENSMUSG00000039007.10, intron 1 of 7) 20019 ENSMUSG00000039007.10 ENSMUSG00000039007 ENSMUST00000226896 Cpq protein_coding Interval_51101 chr14 23086651 23086954 + 0 NA intron (ENSMUSG00000068680.1, intron 2 of 3) antisense-intron (ENSMUSG00000068680.1, intron 2 of 3) 7769 ENSMUSG00000068680.1 ENSMUSG00000068680 ENSMUST00000090409 Gm10248 antisense Interval_55509 chr14 89628792 89629041 + 0 NA Intergenic Intergenic -77889 ENSMUSG00000077408.1 ENSMUSG00000077408 ENSMUST00000104220 Gm25415 snoRNA Interval_20591 chr10 119249649 119249869 + 0 NA Intergenic Intergenic -37150 ENSMUSG00000020114.12 ENSMUSG00000020114 ENSMUST00000126373 Cand1 protein_coding Interval_145706 chr7 37553586 37554763 + 0 NA intron (ENSMUSG00000043456.17, intron 1 of 3) protein_coding-intron (ENSMUSG00000043456.17, intron 4 of 5) 14216 ENSMUSG00000043456.17 ENSMUSG00000043456 ENSMUST00000206332 Zfp536 protein_coding Interval_162763 chr9 8719149 8719503 + 0 NA intron (ENSMUSG00000111602.1, intron 2 of 4) lincRNA-intron (ENSMUSG00000111602.1, intron 2 of 2) 21662 ENSMUSG00000111602.1 ENSMUSG00000111602 ENSMUST00000214779 Gm32014 lincRNA Interval_104433 chr3 65594633 65595124 + 0 NA Intergenic Intergenic -18711 ENSMUSG00000082280.4 ENSMUSG00000082280 ENSMUST00000178959 Gm5847 processed_pseudogene Interval_149417 chr7 98341177 98342052 + 0 NA Intergenic Intergenic 18573 ENSMUSG00000049580.12 ENSMUSG00000049580 ENSMUST00000206770 Tsku protein_coding Interval_148280 chr7 80260618 80261891 + 0 NA promoter-TSS (ENSMUSG00000047084.8) protein_coding-promoter-TSS (ENSMUSG00000047084.8) 34 ENSMUSG00000047084.8 ENSMUSG00000047084 ENSMUST00000138005 Ngrn protein_coding Interval_94551 chr2 92163522 92163969 + 0 NA intron (ENSMUSG00000058318.15, intron 1 of 16) protein_coding-intron (ENSMUSG00000058318.15, intron 1 of 15) -20557 ENSMUSG00000058318.15 ENSMUSG00000058318 ENSMUST00000161044 Phf21a protein_coding Interval_43532 chr13 32827853 32828284 + 0 NA Intergenic Intergenic 7302 ENSMUSG00000021400.8 ENSMUSG00000021400 ENSMUST00000230949 Wrnip1 protein_coding Interval_68111 chr16 65192941 65193193 + 0 NA Intergenic Intergenic 3382 ENSMUSG00000116833.1 ENSMUSG00000116833 ENSMUST00000232619 Gm9584 processed_pseudogene Interval_60061 chr15 64345284 64345548 + 0 NA intron (ENSMUSG00000022377.16, intron 2 of 30) protein_coding-intron (ENSMUSG00000022377.16, intron 2 of 30) -16399 ENSMUSG00000115646.1 ENSMUSG00000115646 ENSMUST00000228336 Gm10926 TEC Interval_152411 chr7 132834130 132834444 + 0 NA intron (ENSMUSG00000030960.16, intron 4 of 4) protein_coding-intron (ENSMUSG00000030960.16, intron 4 of 5) 5936 ENSMUSG00000110159.1 ENSMUSG00000110159 ENSMUST00000211468 Gm45501 TEC Interval_83117 chr18 81531895 81532459 + 0 NA Intergenic Intergenic 51820 ENSMUSG00000118300.1 ENSMUSG00000118300 ENSMUST00000237597 Gm50412 lincRNA Interval_111046 chr4 11471105 11471878 + 0 NA Intergenic Intergenic -14552 ENSMUSG00000040720.15 ENSMUSG00000040720 ENSMUST00000108307 Virma protein_coding Interval_154230 chr8 13601768 13602876 + 0 NA intron (ENSMUSG00000031453.16, intron 5 of 6) protein_coding-intron (ENSMUSG00000031453.16, intron 4 of 23) -39861 ENSMUSG00000031452.15 ENSMUSG00000031452 ENSMUST00000132787 1700029H14Rik protein_coding Interval_38391 chr12 78573119 78573793 + 0 NA intron (ENSMUSG00000047454.12, intron 10 of 22) protein_coding-intron (ENSMUSG00000047454.12, intron 11 of 23) -109191 ENSMUSG00000047454.12 ENSMUSG00000047454 ENSMUST00000219629 Gphn protein_coding Interval_7034 chr1 123064484 123065601 + 0 NA Intergenic Intergenic 84175 ENSMUSG00000100762.1 ENSMUSG00000100762 ENSMUST00000189712 Gm8403 processed_pseudogene Interval_120033 chr4 141458182 141459013 + 0 NA intron (ENSMUSG00000006215.12, intron 2 of 14) protein_coding-intron (ENSMUSG00000006215.12, intron 2 of 15) 13891 ENSMUSG00000006215.12 ENSMUSG00000006215 ENSMUST00000130482 Zbtb17 protein_coding Interval_7226 chr1 128019164 128019418 + 0 NA promoter-TSS (ENSMUSG00000036086.16) protein_coding-promoter-TSS (ENSMUSG00000036086.16) -19278 ENSMUSG00000058603.10 ENSMUSG00000058603 ENSMUST00000121497 Rpl28-ps1 processed_pseudogene Interval_165129 chr9 44711204 44712050 + 0 NA promoter-TSS (ENSMUSG00000048537.16) protein_coding-promoter-TSS (ENSMUSG00000048537.16) -1383 ENSMUSG00000111280.1 ENSMUSG00000111280 ENSMUST00000214717 Gm47239 TEC Interval_56230 chr14 114079705 114079913 + 0 NA Intergenic Intergenic -92634 ENSMUSG00000115572.1 ENSMUSG00000115572 ENSMUST00000227752 Gm18369 processed_pseudogene Interval_45035 chr13 51644626 51646097 + 0 NA exon (ENSMUSG00000062248.5, exon 1 of 3) protein_coding-exon (ENSMUSG00000062248.5, exon 1 of 3) 129 ENSMUSG00000062248.5 ENSMUSG00000062248 ENSMUST00000075853 Cks2 protein_coding Interval_18800 chr10 90964178 90964410 + 0 NA intron (ENSMUSG00000058589.14, intron 24 of 25) protein_coding-intron (ENSMUSG00000058589.14, intron 10 of 11) -41447 ENSMUSG00000087966.1 ENSMUSG00000087966 ENSMUST00000157341 Gm25390 snRNA Interval_71454 chr17 23851131 23851916 + 0 NA intron (ENSMUSG00000048992.9, intron 1 of 1) protein_coding-intron (ENSMUSG00000048992.9, intron 1 of 1) -2355 ENSMUSG00000048992.9 ENSMUSG00000048992 ENSMUST00000233370 Prss32 protein_coding Interval_77412 chr17 88543358 88543589 + 0 NA TTS (ENSMUSG00000034709.8) protein_coding-TTS (ENSMUSG00000034709.8) 10446 ENSMUSG00000103075.1 ENSMUSG00000103075 ENSMUST00000195386 Gm38109 TEC Interval_80801 chr18 47329839 47331444 + 0 NA intron (ENSMUSG00000019647.16, intron 1 of 16) protein_coding-intron (ENSMUSG00000019647.16, intron 1 of 18) 2707 ENSMUSG00000019647.16 ENSMUSG00000019647 ENSMUST00000144223 Sema6a protein_coding Interval_103030 chr3 34639184 34640012 + 0 NA TTS (ENSMUSG00000084530.2) misc_RNA-TTS (ENSMUSG00000084530.2) 1134 ENSMUSG00000104797.1 ENSMUSG00000104797 ENSMUST00000198006 Mir1897 miRNA Interval_152697 chr7 136451796 136452966 + 0 NA Intergenic Intergenic 56952 ENSMUSG00000087869.1 ENSMUSG00000087869 ENSMUST00000157244 Gm24444 misc_RNA Interval_58108 chr15 27962568 27962778 + 0 NA intron (ENSMUSG00000022263.10, intron 1 of 56) protein_coding-intron (ENSMUSG00000022263.10, intron 1 of 56) 32690 ENSMUSG00000022263.10 ENSMUSG00000022263 ENSMUST00000228950 Trio protein_coding Interval_18334 chr10 85010786 85011078 + 0 NA intron (ENSMUSG00000035620.15, intron 2 of 2) protein_coding-intron (ENSMUSG00000035620.15, intron 9 of 9) 73539 ENSMUSG00000035620.15 ENSMUSG00000035620 ENSMUST00000214820 Ric8b protein_coding Interval_98714 chr2 154467179 154467597 + 0 NA intron (ENSMUSG00000038533.15, intron 1 of 2) protein_coding-intron (ENSMUSG00000038533.15, intron 1 of 10) 30546 ENSMUSG00000038533.15 ENSMUSG00000038533 ENSMUST00000139506 Cbfa2t2 protein_coding Interval_141472 chr6 128460329 128461756 + 0 NA intron (ENSMUSG00000059659.7, intron 2 of 4) antisense-intron (ENSMUSG00000059659.7, intron 2 of 2) 12346 ENSMUSG00000107896.1 ENSMUSG00000107896 ENSMUST00000203602 Gm8719 processed_pseudogene Interval_38499 chr12 79663225 79664048 + 0 NA intron (ENSMUSG00000059060.15, intron 8 of 10) protein_coding-intron (ENSMUSG00000059060.15, intron 8 of 10) 261858 ENSMUSG00000112765.1 ENSMUSG00000112765 ENSMUST00000219857 9430078K24Rik lincRNA Interval_117649 chr4 125275241 125275955 + 0 NA Intergenic Intergenic 47001 ENSMUSG00000087010.1 ENSMUSG00000087010 ENSMUST00000130055 1700041M05Rik lincRNA Interval_105083 chr3 81057933 81059219 + 0 NA intron (ENSMUSG00000028019.9, intron 1 of 5) protein_coding-intron (ENSMUSG00000028019.9, intron 1 of 5) -18139 ENSMUSG00000085106.1 ENSMUSG00000085106 ENSMUST00000146657 Gm16000 antisense Interval_148063 chr7 78941609 78942374 + 0 NA Intergenic Intergenic -18105 ENSMUSG00000108670.1 ENSMUSG00000108670 ENSMUST00000206812 Gm44815 TEC Interval_57962 chr15 25755840 25756516 + 0 NA intron (ENSMUSG00000022272.17, intron 1 of 20) protein_coding-intron (ENSMUSG00000022272.17, intron 1 of 20) -12378 ENSMUSG00000022272.17 ENSMUSG00000022272 ENSMUST00000145587 Myo10 protein_coding Interval_14577 chr10 36471513 36471706 + 0 NA Intergenic Intergenic -35280 ENSMUSG00000044499.11 ENSMUSG00000044499 ENSMUST00000171521 Hs3st5 protein_coding Interval_47459 chr13 84638866 84639487 + 0 NA Intergenic Intergenic 51765 ENSMUSG00000098081.1 ENSMUSG00000098081 ENSMUST00000182391 Gm26913 processed_pseudogene Interval_83592 chr18 90372752 90374677 + 0 NA Intergenic Intergenic 31228 ENSMUSG00000118372.1 ENSMUSG00000118372 ENSMUST00000236347 Gm50434 processed_pseudogene Interval_144468 chr7 25325378 25325653 + 0 NA intron (ENSMUSG00000045039.9, intron 1 of 40) protein_coding-intron (ENSMUSG00000045039.9, intron 1 of 40) 19407 ENSMUSG00000043843.17 ENSMUSG00000043843 ENSMUST00000108409 Tmem145 protein_coding Interval_171064 chr9 114069894 114070170 + 0 NA intron (ENSMUSG00000086596.2, intron 3 of 4) protein_coding-intron (ENSMUSG00000086596.2, intron 3 of 4) 12892 ENSMUSG00000086596.2 ENSMUSG00000086596 ENSMUST00000135338 Susd5 protein_coding Interval_167087 chr9 65175415 65176671 + 0 NA intron (ENSMUSG00000032394.6, intron 2 of 13) protein_coding-intron (ENSMUSG00000032394.6, intron 2 of 13) -19310 ENSMUSG00000032392.11 ENSMUSG00000032392 ENSMUST00000213766 Parp16 protein_coding Interval_168046 chr9 75581960 75584045 + 0 NA exon (ENSMUSG00000110895.1, exon 1 of 1) TEC-exon (ENSMUSG00000110895.1, exon 1 of 1) 2107 ENSMUSG00000110895.1 ENSMUSG00000110895 ENSMUST00000214120 Gm48822 TEC Interval_21474 chr10 128794375 128795654 + 0 NA exon (ENSMUSG00000025355.7, exon 4 of 9) protein_coding-exon (ENSMUSG00000025355.7, exon 4 of 9) 4104 ENSMUSG00000025355.7 ENSMUSG00000025355 ENSMUST00000218021 Mmp19 protein_coding Interval_116987 chr4 118692335 118694087 + 0 NA promoter-TSS (ENSMUSG00000043383.5) protein_coding-promoter-TSS (ENSMUSG00000043383.5) -455 ENSMUSG00000043383.5 ENSMUSG00000043383 ENSMUST00000060562 Olfr1342 protein_coding Interval_104512 chr3 67081915 67082601 + 0 NA intron (ENSMUSG00000034544.17, intron 3 of 7) protein_coding-intron (ENSMUSG00000034544.17, intron 2 of 8) 26300 ENSMUSG00000065245.1 ENSMUSG00000065245 ENSMUST00000083311 Gm22295 snRNA Interval_62824 chr15 97246591 97248055 + 0 NA promoter-TSS (ENSMUSG00000048218.6) protein_coding-promoter-TSS (ENSMUSG00000048218.6) -201 ENSMUSG00000048218.6 ENSMUSG00000048218 ENSMUST00000053106 Amigo2 protein_coding Interval_135965 chr6 49131819 49132981 + 0 NA intron (ENSMUSG00000029814.10, intron 5 of 9) protein_coding-intron (ENSMUSG00000029814.10, intron 5 of 14) -38189 ENSMUSG00000029814.10 ENSMUSG00000029814 ENSMUST00000203680 Igf2bp3 protein_coding Interval_125910 chr5 75635191 75635638 + 0 NA intron (ENSMUSG00000005672.12, intron 7 of 20) protein_coding-intron (ENSMUSG00000005672.12, intron 7 of 20) -13680 ENSMUSG00000005672.12 ENSMUSG00000005672 ENSMUST00000201240 Kit protein_coding Interval_68434 chr16 76445189 76445527 + 0 NA intron (ENSMUSG00000109338.2, intron 1 of 5) lincRNA-intron (ENSMUSG00000109338.2, intron 1 of 5) -41706 ENSMUSG00000050299.8 ENSMUSG00000050299 ENSMUST00000052867 Gm9843 processed_pseudogene Interval_35505 chr12 24037235 24037801 + 0 NA Intergenic Intergenic -20521 ENSMUSG00000112987.1 ENSMUSG00000112987 ENSMUST00000222563 Gm5954 unprocessed_pseudogene Interval_78949 chr18 22422901 22424132 + 0 NA intron (ENSMUSG00000045215.17, intron 4 of 11) protein_coding-intron (ENSMUSG00000045215.17, intron 5 of 12) 79270 ENSMUSG00000045215.17 ENSMUSG00000045215 ENSMUST00000097655 Asxl3 protein_coding Interval_162431 chr8 128671993 128672678 + 0 NA Intergenic Intergenic 18022 ENSMUSG00000110654.1 ENSMUSG00000110654 ENSMUST00000212623 Gm45746 TEC Interval_27880 chr11 70593990 70594536 + 0 NA intron (ENSMUSG00000020827.18, intron 1 of 31) protein_coding-intron (ENSMUSG00000020827.18, intron 1 of 32) -9937 ENSMUSG00000020827.18 ENSMUSG00000020827 ENSMUST00000132208 Mink1 protein_coding Interval_107225 chr3 104752246 104754045 + 0 NA promoter-TSS (ENSMUSG00000089999.1) transcribed_processed_pseudogene-promoter-TSS (ENSMUSG00000089999.1) 20 ENSMUSG00000089999.1 ENSMUSG00000089999 ENSMUST00000160676 Gm6485 transcribed_processed_pseudogene Interval_152767 chr7 137390678 137391460 + 0 NA intron (ENSMUSG00000040139.14, intron 1 of 1) protein_coding-intron (ENSMUSG00000040139.14, intron 1 of 3) 19687 ENSMUSG00000040139.14 ENSMUSG00000040139 ENSMUST00000120340 9430038I01Rik protein_coding Interval_42789 chr13 19563157 19563669 + 0 NA Intergenic Intergenic 37426 ENSMUSG00000113251.1 ENSMUSG00000113251 ENSMUST00000221671 Gm18363 processed_pseudogene Interval_27530 chr11 68451373 68451596 + 0 NA intron (ENSMUSG00000020901.13, intron 1 of 3) protein_coding-intron (ENSMUSG00000020901.13, intron 1 of 18) -23997 ENSMUSG00000020901.13 ENSMUSG00000020901 ENSMUST00000155887 Pik3r5 protein_coding Interval_155343 chr8 31939863 31940208 + 0 NA intron (ENSMUSG00000062991.9, intron 3 of 10) protein_coding-intron (ENSMUSG00000062991.9, intron 5 of 11) -21277 ENSMUSG00000118541.1 ENSMUSG00000118541 ENSMUST00000239000 AC132407.1 protein_coding Interval_112667 chr4 43942026 43943471 + 0 NA TTS (ENSMUSG00000028476.13) protein_coding-TTS (ENSMUSG00000028476.13) 2350 ENSMUSG00000028476.13 ENSMUSG00000028476 ENSMUST00000130415 Reck protein_coding Interval_105194 chr3 83750792 83751936 + 0 NA Intergenic Intergenic -15489 ENSMUSG00000027996.13 ENSMUSG00000027996 ENSMUST00000154794 Sfrp2 protein_coding Interval_54776 chr14 74968879 74969527 + 0 NA Intergenic Intergenic -5883 ENSMUSG00000115019.1 ENSMUSG00000115019 ENSMUST00000228599 Gm4278 lincRNA Interval_150864 chr7 115962238 115962898 + 0 NA intron (ENSMUSG00000051910.13, intron 1 of 11) protein_coding-intron (ENSMUSG00000051910.13, intron 1 of 16) -32706 ENSMUSG00000108489.1 ENSMUSG00000108489 ENSMUST00000206043 Gm45025 antisense Interval_160912 chr8 114971164 114971956 + 0 NA intron (ENSMUSG00000004637.15, intron 8 of 8) protein_coding-intron (ENSMUSG00000004637.15, intron 8 of 8) 81353 ENSMUSG00000088428.1 ENSMUSG00000088428 ENSMUST00000157803 Gm22556 rRNA Interval_38277 chr12 76868935 76869966 + 0 NA intron (ENSMUSG00000033373.16, intron 4 of 13) protein_coding-intron (ENSMUSG00000033373.16, intron 2 of 11) -17608 ENSMUSG00000033373.16 ENSMUSG00000033373 ENSMUST00000130605 Fntb protein_coding Interval_78128 chr18 8872283 8872605 + 0 NA Intergenic Intergenic -55791 ENSMUSG00000103172.1 ENSMUSG00000103172 ENSMUST00000195097 Gm37148 TEC Interval_134026 chr6 17823852 17824349 + 0 NA intron (ENSMUSG00000029534.17, intron 2 of 15) protein_coding-intron (ENSMUSG00000029534.17, intron 2 of 14) 11085 ENSMUSG00000097700.1 ENSMUSG00000097700 ENSMUST00000181312 Gm26738 antisense Interval_171902 chr9 122251027 122251242 + 0 NA intron (ENSMUSG00000037949.8, intron 11 of 11) protein_coding-intron (ENSMUSG00000037949.8, intron 11 of 12) 22894 ENSMUSG00000098922.1 ENSMUSG00000098922 ENSMUST00000184520 Mir8106 miRNA Interval_42753 chr13 19065052 19065868 + 0 NA intron (ENSMUSG00000021314.13, intron 1 of 19) protein_coding-intron (ENSMUSG00000021314.13, intron 2 of 20) 6115 ENSMUSG00000113378.1 ENSMUSG00000113378 ENSMUST00000220695 Gm47660 processed_pseudogene Interval_89028 chr2 14736606 14736810 + 0 NA exon (ENSMUSG00000103050.1, exon 1 of 1) TEC-exon (ENSMUSG00000103050.1, exon 1 of 1) 1219 ENSMUSG00000103050.1 ENSMUSG00000103050 ENSMUST00000194987 Gm38273 TEC Interval_136603 chr6 56498016 56498223 + 0 NA intron (ENSMUSG00000004347.17, intron 2 of 19) protein_coding-intron (ENSMUSG00000004347.17, intron 1 of 18) 85727 ENSMUSG00000096087.1 ENSMUSG00000096087 ENSMUST00000104123 Gm24709 snoRNA Interval_110686 chr4 6436179 6437439 + 0 NA intron (ENSMUSG00000028245.15, intron 5 of 9) protein_coding-intron (ENSMUSG00000028245.15, intron 5 of 30) 17287 ENSMUSG00000028245.15 ENSMUSG00000028245 ENSMUST00000124656 Nsmaf protein_coding Interval_147649 chr7 70606655 70606898 + 0 NA Intergenic Intergenic 13886 ENSMUSG00000109018.1 ENSMUSG00000109018 ENSMUST00000208305 Gm44809 TEC Interval_171005 chr9 113656000 113656277 + 0 NA exon (ENSMUSG00000032504.15, exon 17 of 18) protein_coding-exon (ENSMUSG00000032504.15, exon 17 of 18) -14084 ENSMUSG00000111364.1 ENSMUSG00000111364 ENSMUST00000213455 Gm36745 lincRNA Interval_15445 chr10 46740555 46741742 + 0 NA Intergenic Intergenic 71004 ENSMUSG00000111754.1 ENSMUSG00000111754 ENSMUST00000217086 Gm19994 processed_pseudogene Interval_64291 chr16 10274585 10275066 + 0 NA Intergenic Intergenic 1075 ENSMUSG00000093251.1 ENSMUSG00000093251 ENSMUST00000175510 Gm22932 miRNA Interval_24431 chr11 33209658 33210486 + 0 NA intron (ENSMUSG00000087501.1, intron 1 of 3) lincRNA-intron (ENSMUSG00000087501.1, intron 1 of 3) 6017 ENSMUSG00000087501.1 ENSMUSG00000087501 ENSMUST00000131851 Gm12116 lincRNA Interval_50947 chr14 20977715 20977896 + 0 NA intron (ENSMUSG00000021823.10, intron 2 of 7) protein_coding-intron (ENSMUSG00000021823.10, intron 2 of 20) 48407 ENSMUSG00000021823.10 ENSMUSG00000021823 ENSMUST00000224380 Vcl protein_coding Interval_138159 chr6 85631107 85631441 + 0 NA intron (ENSMUSG00000063810.7, intron 10 of 22) protein_coding-intron (ENSMUSG00000063810.7, intron 10 of 22) -1590 ENSMUSG00000107370.1 ENSMUSG00000107370 ENSMUST00000201862 Gm43588 TEC Interval_74101 chr17 46573286 46574038 + 0 NA promoter-TSS (ENSMUSG00000023972.10) protein_coding-promoter-TSS (ENSMUSG00000023972.10) -712 ENSMUSG00000023972.10 ENSMUSG00000023972 ENSMUST00000044442 Ptk7 protein_coding Interval_137155 chr6 68500680 68500909 + 0 NA Intergenic Intergenic -18218 ENSMUSG00000096515.5 ENSMUSG00000096515 ENSMUST00000103325 Igkv14-100 IG_V_gene Interval_101348 chr2 180677911 180679617 + 0 NA intron (ENSMUSG00000038914.15, intron 6 of 14) protein_coding-intron (ENSMUSG00000038914.15, intron 6 of 15) -19299 ENSMUSG00000064422.1 ENSMUSG00000064422 ENSMUST00000082488 Gm22502 snRNA Interval_118586 chr4 132636083 132636777 + 0 NA Intergenic Intergenic -2616 ENSMUSG00000028886.15 ENSMUSG00000028886 ENSMUST00000130833 Eya3 protein_coding Interval_150925 chr7 116365660 116365908 + 0 NA intron (ENSMUSG00000030660.9, intron 1 of 17) protein_coding-intron (ENSMUSG00000030660.9, intron 15 of 32) -25155 ENSMUSG00000030660.9 ENSMUSG00000030660 ENSMUST00000205767 Pik3c2a protein_coding Interval_5950 chr1 93456260 93457191 + 0 NA intron (ENSMUSG00000034088.15, intron 1 of 27) protein_coding-intron (ENSMUSG00000034088.15, intron 1 of 27) -11043 ENSMUSG00000034088.15 ENSMUSG00000034088 ENSMUST00000188844 Hdlbp protein_coding Interval_82025 chr18 67252310 67252528 + 0 NA Intergenic Intergenic -6978 ENSMUSG00000062526.4 ENSMUSG00000062526 ENSMUST00000237631 Mppe1 protein_coding Interval_138241 chr6 86543106 86543366 + 0 NA intron (ENSMUSG00000097048.7, intron 3 of 3) antisense-intron (ENSMUSG00000097048.7, intron 2 of 3) 15762 ENSMUSG00000097048.7 ENSMUSG00000097048 ENSMUST00000204663 1600020E01Rik antisense Interval_149014 chr7 91974297 91974962 + 0 NA intron (ENSMUSG00000052572.19, intron 7 of 19) protein_coding-intron (ENSMUSG00000052572.19, intron 9 of 22) 66566 ENSMUSG00000108953.1 ENSMUSG00000108953 ENSMUST00000208444 Gm45129 TEC Interval_87849 chr19 56536022 56536230 + 0 NA intron (ENSMUSG00000025077.13, intron 7 of 9) protein_coding-intron (ENSMUSG00000025077.13, intron 6 of 7) 1256 ENSMUSG00000025077.13 ENSMUSG00000025077 ENSMUST00000182059 Dclre1a protein_coding Interval_58623 chr15 36644217 36645357 + 0 NA intron (ENSMUSG00000115127.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000115127.1, intron 1 of 1) -14918 ENSMUSG00000115537.1 ENSMUSG00000115537 ENSMUST00000226628 Gm6704 processed_pseudogene Interval_132366 chr5 144505931 144507377 + 0 NA Intergenic Intergenic -39248 ENSMUSG00000059991.7 ENSMUSG00000059991 ENSMUST00000071782 Nptx2 protein_coding Interval_32780 chr11 110498729 110499657 + 0 NA intron (ENSMUSG00000020623.11, intron 9 of 9) protein_coding-intron (ENSMUSG00000020623.11, intron 9 of 11) 21816 ENSMUSG00000020623.11 ENSMUSG00000020623 ENSMUST00000133920 Map2k6 protein_coding Interval_84121 chr19 7329148 7329369 + 0 NA intron (ENSMUSG00000024969.15, intron 1 of 7) protein_coding-intron (ENSMUSG00000024969.15, intron 1 of 17) 11934 ENSMUSG00000024969.15 ENSMUSG00000024969 ENSMUST00000168324 Mark2 protein_coding Interval_50636 chr14 16973873 16974757 + 0 NA Intergenic Intergenic 20709 ENSMUSG00000114202.1 ENSMUSG00000114202 ENSMUST00000224816 Gm18078 processed_pseudogene Interval_167431 chr9 69258402 69258690 + 0 NA intron (ENSMUSG00000032238.17, intron 3 of 5) protein_coding-intron (ENSMUSG00000032238.17, intron 2 of 10) 105701 ENSMUSG00000086648.1 ENSMUSG00000086648 ENSMUST00000152570 Gm15511 antisense Interval_35412 chr12 21434361 21434626 + 0 NA Intergenic Intergenic 16614 ENSMUSG00000097055.2 ENSMUSG00000097055 ENSMUST00000227598 Gm4419 antisense Interval_131193 chr5 135712802 135713690 + 0 NA intron (ENSMUSG00000005514.14, intron 1 of 14) protein_coding-intron (ENSMUSG00000005514.14, intron 1 of 15) -14227 ENSMUSG00000080972.1 ENSMUSG00000080972 ENSMUST00000122167 Gm16061 processed_pseudogene Interval_158020 chr8 78081023 78081945 + 0 NA Intergenic Intergenic -26476 ENSMUSG00000109948.1 ENSMUSG00000109948 ENSMUST00000210236 Gm45288 processed_pseudogene Interval_64766 chr16 15576220 15576679 + 0 NA intron (ENSMUSG00000022674.15, intron 3 of 3) protein_coding-intron (ENSMUSG00000022674.15, intron 4 of 4) -10916 ENSMUSG00000116386.1 ENSMUSG00000116386 ENSMUST00000229197 Gm49538 processed_pseudogene Interval_40746 chr12 108098097 108098853 + 0 NA Intergenic Intergenic 64534 ENSMUSG00000056770.15 ENSMUSG00000056770 ENSMUST00000125916 Setd3 protein_coding Interval_37044 chr12 56838316 56838578 + 0 NA intron (ENSMUSG00000035472.14, intron 4 of 10) protein_coding-intron (ENSMUSG00000035472.14, intron 3 of 9) -145483 ENSMUSG00000089894.2 ENSMUSG00000089894 ENSMUST00000159874 Gm15524 antisense Interval_160997 chr8 116771828 116772892 + 0 NA Intergenic Intergenic -6881 ENSMUSG00000074072.2 ENSMUSG00000074072 ENSMUST00000098379 Gm10620 pseudogene Interval_23804 chr11 26419978 26420219 + 0 NA intron (ENSMUSG00000004018.9, intron 4 of 4) protein_coding-intron (ENSMUSG00000004018.9, intron 5 of 13) 10891 ENSMUSG00000081811.1 ENSMUSG00000081811 ENSMUST00000118404 Gm12713 processed_pseudogene Interval_57248 chr15 8125621 8125848 + 0 NA intron (ENSMUSG00000022142.8, intron 12 of 33) protein_coding-intron (ENSMUSG00000022142.8, intron 12 of 34) -25349 ENSMUSG00000022142.8 ENSMUSG00000022142 ENSMUST00000230647 Nup155 protein_coding Interval_129682 chr5 121710843 121713339 + 0 NA promoter-TSS (ENSMUSG00000042605.16) protein_coding-promoter-TSS (ENSMUSG00000042605.16) 231 ENSMUSG00000042605.16 ENSMUSG00000042605 ENSMUST00000199864 Atxn2 protein_coding Interval_132703 chr5 147276749 147278475 + 0 NA Intergenic Intergenic -3108 ENSMUSG00000098053.1 ENSMUSG00000098053 ENSMUST00000183226 Gm27033 lincRNA Interval_53482 chr14 57773767 57774616 + 0 NA Intergenic Intergenic -24233 ENSMUSG00000092784.1 ENSMUSG00000092784 ENSMUST00000175043 Mir3077 miRNA Interval_85921 chr19 33244285 33244634 + 0 NA intron (ENSMUSG00000071573.14, intron 2 of 4) polymorphic_pseudogene-intron (ENSMUSG00000071573.14, intron 4 of 6) 87347 ENSMUSG00000106278.1 ENSMUSG00000106278 ENSMUST00000199287 Mir3970 miRNA Interval_23638 chr11 24009329 24009668 + 0 NA Intergenic Intergenic -5157 ENSMUSG00000104783.1 ENSMUSG00000104783 ENSMUST00000199670 Gm44381 miRNA Interval_27225 chr11 64383367 64383878 + 0 NA Intergenic Intergenic -51710 ENSMUSG00000047759.6 ENSMUSG00000047759 ENSMUST00000058652 Hs3st3a1 protein_coding Interval_101309 chr2 180300350 180300630 + 0 NA Intergenic Intergenic -10611 ENSMUSG00000038980.1 ENSMUSG00000038980 ENSMUST00000038529 Rbbp8nl protein_coding Interval_97396 chr2 135750923 135751610 + 0 NA intron (ENSMUSG00000039943.16, intron 2 of 2) protein_coding-intron (ENSMUSG00000039943.16, intron 1 of 36) 9436 ENSMUSG00000039943.16 ENSMUSG00000039943 ENSMUST00000147122 Plcb4 protein_coding Interval_78238 chr18 10553380 10554429 + 0 NA intron (ENSMUSG00000042942.18, intron 1 of 4) protein_coding-intron (ENSMUSG00000042942.18, intron 28 of 32) -2498 ENSMUSG00000084693.1 ENSMUSG00000084693 ENSMUST00000122744 Gm24894 snoRNA Interval_35159 chr12 17674385 17674660 + 0 NA Intergenic Intergenic -29317 ENSMUSG00000088939.1 ENSMUSG00000088939 ENSMUST00000158314 Gm25925 misc_RNA Interval_102451 chr3 26745322 26745721 + 0 NA intron (ENSMUSG00000039335.11, intron 3 of 9) protein_coding-intron (ENSMUSG00000039335.11, intron 3 of 10) 107871 ENSMUSG00000039335.11 ENSMUSG00000039335 ENSMUST00000108305 Spata16 protein_coding Interval_65830 chr16 29619286 29619526 + 0 NA TTS (ENSMUSG00000038084.16) protein_coding-TTS (ENSMUSG00000038084.16) 32392 ENSMUSG00000038084.16 ENSMUSG00000038084 ENSMUST00000160101 Opa1 protein_coding Interval_127245 chr5 101844840 101845292 + 0 NA TTS (ENSMUSG00000092354.7) antisense-TTS (ENSMUSG00000092354.7) 7614 ENSMUSG00000092354.7 ENSMUSG00000092354 ENSMUST00000174312 Gm20548 antisense Interval_2099 chr1 36421281 36421502 + 0 NA TTS (ENSMUSG00000001143.13) protein_coding-TTS (ENSMUSG00000001143.13) 23866 ENSMUSG00000001143.13 ENSMUSG00000001143 ENSMUST00000193502 Lman2l protein_coding Interval_140099 chr6 114135502 114135741 + 0 NA intron (ENSMUSG00000030307.8, intron 3 of 13) protein_coding-intron (ENSMUSG00000030307.8, intron 3 of 13) 4202 ENSMUSG00000030307.8 ENSMUSG00000030307 ENSMUST00000203105 Slc6a11 protein_coding Interval_80032 chr18 36764303 36766610 + 0 NA exon (ENSMUSG00000044595.10, exon 3 of 4) protein_coding-exon (ENSMUSG00000044595.10, exon 3 of 4) 758 ENSMUSG00000044595.10 ENSMUSG00000044595 ENSMUST00000124038 Dnd1 protein_coding Interval_48012 chr13 95180208 95180589 + 0 NA intron (ENSMUSG00000021684.17, intron 1 of 12) protein_coding-intron (ENSMUSG00000021684.17, intron 1 of 20) -27714 ENSMUSG00000090033.1 ENSMUSG00000090033 ENSMUST00000160351 Gm16243 antisense Interval_46158 chr13 62097394 62099728 + 0 NA intron (ENSMUSG00000113566.1, intron 1 of 3) lincRNA-intron (ENSMUSG00000114036.1, intron 1 of 1) 791 ENSMUSG00000113566.1 ENSMUSG00000113566 ENSMUST00000221554 Gm40977 lincRNA Interval_24462 chr11 33452356 33453625 + 0 NA promoter-TSS (ENSMUSG00000040594.19) protein_coding-promoter-TSS (ENSMUSG00000040594.19) -476 ENSMUSG00000040594.19 ENSMUSG00000040594 ENSMUST00000147751 Ranbp17 protein_coding Interval_130618 chr5 129241788 129243445 + 0 NA Intergenic Intergenic -114099 ENSMUSG00000060419.8 ENSMUSG00000060419 ENSMUST00000140155 Rps16-ps2 processed_pseudogene Interval_4240 chr1 72087958 72088460 + 0 NA exon (ENSMUSG00000101496.1, exon 1 of 1) processed_pseudogene-exon (ENSMUSG00000101496.1, exon 1 of 1) 352 ENSMUSG00000101496.1 ENSMUSG00000101496 ENSMUST00000189382 Gm8885 processed_pseudogene Interval_87218 chr19 46987471 46989106 + 0 NA intron (ENSMUSG00000025041.17, intron 1 of 17) protein_coding-intron (ENSMUSG00000025041.17, intron 1 of 17) -25980 ENSMUSG00000025041.17 ENSMUSG00000025041 ENSMUST00000237658 Nt5c2 protein_coding Interval_75283 chr17 65681275 65681600 + 0 NA intron (ENSMUSG00000056515.9, intron 5 of 6) protein_coding-intron (ENSMUSG00000056515.9, intron 5 of 6) -19859 ENSMUSG00000117114.1 ENSMUSG00000117114 ENSMUST00000233942 Gm49867 processed_pseudogene Interval_120677 chr4 150047524 150050448 + 0 NA promoter-TSS (ENSMUSG00000086665.1) lincRNA-promoter-TSS (ENSMUSG00000086665.1) -27 ENSMUSG00000086665.1 ENSMUSG00000086665 ENSMUST00000134236 Gm13067 lincRNA Interval_30602 chr11 95391812 95392657 + 0 NA TTS (ENSMUSG00000020873.15) protein_coding-TTS (ENSMUSG00000020873.15) 7477 ENSMUSG00000020873.15 ENSMUSG00000020873 ENSMUST00000143090 Slc35b1 protein_coding Interval_18956 chr10 93374854 93375556 + 0 NA Intergenic Intergenic 22068 ENSMUSG00000111316.1 ENSMUSG00000111316 ENSMUST00000214319 Gm47344 processed_pseudogene Interval_33735 chr11 118165692 118166015 + 0 NA exon (ENSMUSG00000017132.17, exon 13 of 13) protein_coding-exon (ENSMUSG00000017132.17, exon 13 of 13) 15182 ENSMUSG00000088119.1 ENSMUSG00000088119 ENSMUST00000157494 Gm24060 snRNA Interval_76870 chr17 84639350 84640226 + 0 NA intron (ENSMUSG00000024253.9, intron 5 of 12) protein_coding-intron (ENSMUSG00000024253.9, intron 5 of 12) -9487 ENSMUSG00000024253.9 ENSMUSG00000024253 ENSMUST00000234861 Dync2li1 protein_coding Interval_141815 chr6 134675968 134676483 + 0 NA intron (ENSMUSG00000042992.15, intron 2 of 2) protein_coding-intron (ENSMUSG00000042992.15, intron 2 of 3) -13634 ENSMUSG00000108166.1 ENSMUSG00000108166 ENSMUST00000203231 Gm44017 sense_intronic Interval_141016 chr6 124398366 124398561 + 0 NA exon (ENSMUSG00000005069.12, exon 15 of 16) protein_coding-exon (ENSMUSG00000005069.12, exon 15 of 16) 1151 ENSMUSG00000005069.12 ENSMUSG00000005069 ENSMUST00000150812 Pex5 protein_coding Interval_74022 chr17 46110296 46111444 + 0 NA promoter-TSS (ENSMUSG00000023967.9) protein_coding-promoter-TSS (ENSMUSG00000023967.9) -14405 ENSMUSG00000023967.9 ENSMUSG00000023967 ENSMUST00000146255 Mrps18a protein_coding Interval_67637 chr16 54967179 54967426 + 0 NA Intergenic Intergenic -5129 ENSMUSG00000064549.1 ENSMUSG00000064549 ENSMUST00000082615 Gm22977 snRNA Interval_139023 chr6 94256961 94258221 + 0 NA intron (ENSMUSG00000045095.16, intron 1 of 2) protein_coding-intron (ENSMUSG00000045095.16, intron 1 of 21) 66443 ENSMUSG00000107545.1 ENSMUSG00000107545 ENSMUST00000204466 Gm44307 processed_pseudogene Interval_144073 chr7 19307961 19309047 + 0 NA exon (ENSMUSG00000003545.3, exon 1 of 1) protein_coding-exon (ENSMUSG00000003545.3, exon 1 of 1) 1542 ENSMUSG00000003545.3 ENSMUSG00000003545 ENSMUST00000208230 Fosb protein_coding Interval_156980 chr8 63730572 63731436 + 0 NA intron (ENSMUSG00000109825.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000109825.1, intron 1 of 3) 8573 ENSMUSG00000109825.1 ENSMUSG00000109825 ENSMUST00000210048 Gm45589 lincRNA Interval_133679 chr6 8495548 8496227 + 0 NA intron (ENSMUSG00000087305.8, intron 1 of 2) processed_transcript-intron (ENSMUSG00000087305.8, intron 2 of 2) 5469 ENSMUSG00000077250.1 ENSMUSG00000077250 ENSMUST00000104062 Gm26075 snoRNA Interval_112900 chr4 45895608 45896039 + 0 NA intron (ENSMUSG00000035539.14, intron 3 of 37) protein_coding-intron (ENSMUSG00000035539.14, intron 3 of 12) 5520 ENSMUSG00000035539.14 ENSMUSG00000035539 ENSMUST00000151024 Ccdc180 protein_coding Interval_98872 chr2 155695926 155696876 + 0 NA Intergenic Intergenic 16917 ENSMUSG00000038312.10 ENSMUSG00000038312 ENSMUST00000139868 Edem2 protein_coding Interval_82198 chr18 68903584 68904148 + 0 NA intron (ENSMUSG00000024546.6, intron 3 of 6) lincRNA-intron (ENSMUSG00000024546.6, intron 3 of 6) 47662 ENSMUSG00000024546.6 ENSMUSG00000024546 ENSMUST00000025428 4930546C10Rik lincRNA Interval_162118 chr8 125290899 125292563 + 0 NA Intergenic Intergenic -64408 ENSMUSG00000086694.1 ENSMUSG00000086694 ENSMUST00000156666 Gm16237 antisense Interval_28943 chr11 79437424 79437824 + 0 NA intron (ENSMUSG00000020716.16, intron 17 of 30) protein_coding-intron (ENSMUSG00000020716.16, intron 16 of 57) 14823 ENSMUSG00000082529.1 ENSMUSG00000082529 ENSMUST00000118691 Gm11199 processed_pseudogene Interval_87851 chr19 56547701 56549293 + 0 NA promoter-TSS (ENSMUSG00000025077.13) protein_coding-promoter-TSS (ENSMUSG00000025077.13) -11115 ENSMUSG00000025077.13 ENSMUSG00000025077 ENSMUST00000182059 Dclre1a protein_coding Interval_141120 chr6 125107690 125108638 + 0 NA intron (ENSMUSG00000063870.12, intron 15 of 38) protein_coding-intron (ENSMUSG00000063870.12, intron 15 of 38) 11140 ENSMUSG00000098762.1 ENSMUSG00000098762 ENSMUST00000183346 Mir7045 miRNA Interval_108044 chr3 121005541 121005983 + 0 NA Intergenic Intergenic 15014 ENSMUSG00000105243.1 ENSMUSG00000105243 ENSMUST00000198123 Gm43444 TEC Interval_135834 chr6 47794077 47794524 + 0 NA Intergenic Intergenic -6120 ENSMUSG00000065701.1 ENSMUSG00000065701 ENSMUST00000083767 Rny1 misc_RNA Interval_21075 chr10 125956863 125957899 + 0 NA Intergenic Intergenic -8853 ENSMUSG00000020105.9 ENSMUSG00000020105 ENSMUST00000219974 Lrig3 protein_coding Interval_21282 chr10 127652904 127653611 + 0 NA exon (ENSMUSG00000002147.18, exon 11 of 22) protein_coding-exon (ENSMUSG00000002147.18, exon 11 of 22) -3504 ENSMUSG00000002147.18 ENSMUSG00000002147 ENSMUST00000145470 Stat6 protein_coding Interval_20984 chr10 123013130 123014829 + 0 NA promoter-TSS (ENSMUSG00000034602.15) protein_coding-promoter-TSS (ENSMUSG00000034602.15) 16340 ENSMUSG00000034602.15 ENSMUSG00000034602 ENSMUST00000219203 Mon2 protein_coding Interval_38665 chr12 80925465 80926365 + 0 NA Intergenic Intergenic -1466 ENSMUSG00000101912.1 ENSMUSG00000101912 ENSMUST00000190431 1700052I22Rik lincRNA Interval_62324 chr15 90188910 90190030 + 0 NA Intergenic Intergenic -34879 ENSMUSG00000075470.2 ENSMUSG00000075470 ENSMUST00000231200 Alg10b protein_coding Interval_65861 chr16 29860875 29861076 + 0 NA Intergenic Intergenic -26247 ENSMUSG00000116891.1 ENSMUSG00000116891 ENSMUST00000232318 Gm32679 lincRNA Interval_59364 chr15 51918096 51919015 + 0 NA Intergenic Intergenic 21468 ENSMUSG00000115616.1 ENSMUSG00000115616 ENSMUST00000226818 Gm48923 lincRNA Interval_76659 chr17 83252943 83253559 + 0 NA Intergenic Intergenic -16720 ENSMUSG00000088410.1 ENSMUSG00000088410 ENSMUST00000157785 Gm24240 snoRNA Interval_156721 chr8 57586775 57587290 + 0 NA intron (ENSMUSG00000031608.13, intron 1 of 5) protein_coding-intron (ENSMUSG00000031608.13, intron 1 of 11) 20124 ENSMUSG00000110405.1 ENSMUSG00000110405 ENSMUST00000211449 Gm45534 TEC Interval_129515 chr5 120673771 120675127 + 0 NA intron (ENSMUSG00000029602.11, intron 15 of 20) protein_coding-intron (ENSMUSG00000029602.11, intron 16 of 21) 7630 ENSMUSG00000029603.15 ENSMUSG00000029603 ENSMUST00000124079 Dtx1 protein_coding Interval_17634 chr10 78378572 78379010 + 0 NA Intergenic Intergenic -8471 ENSMUSG00000084496.1 ENSMUSG00000084496 ENSMUST00000122547 Gm22514 misc_RNA Interval_148373 chr7 80843765 80847219 + 0 NA Intergenic Intergenic -15459 ENSMUSG00000038797.13 ENSMUSG00000038797 ENSMUST00000155128 Zscan2 protein_coding Interval_39309 chr12 86580580 86580970 + 0 NA Intergenic Intergenic -69798 ENSMUSG00000113369.1 ENSMUSG00000113369 ENSMUST00000220511 Gm8504 processed_pseudogene Interval_79352 chr18 31034150 31034401 + 0 NA intron (ENSMUSG00000057455.12, intron 4 of 4) protein_coding-intron (ENSMUSG00000057455.12, intron 3 of 3) 178457 ENSMUSG00000057455.12 ENSMUSG00000057455 ENSMUST00000139924 Rit2 protein_coding Interval_4866 chr1 80512446 80512817 + 0 NA exon (ENSMUSG00000038608.15, exon 52 of 56) protein_coding-exon (ENSMUSG00000038608.15, exon 52 of 56) -51183 ENSMUSG00000110100.1 ENSMUSG00000110100 ENSMUST00000211023 Gm45261 protein_coding Interval_44684 chr13 47146123 47146521 + 0 NA intron (ENSMUSG00000114961.1, intron 2 of 2) protein_coding-intron (ENSMUSG00000038068.15, intron 1 of 7) 2348 ENSMUSG00000114961.1 ENSMUSG00000114961 ENSMUST00000224519 A930002C04Rik antisense Interval_127412 chr5 103786311 103787092 + 0 NA intron (ENSMUSG00000029313.18, intron 3 of 12) protein_coding-intron (ENSMUSG00000029313.18, intron 3 of 19) 32137 ENSMUSG00000029313.18 ENSMUSG00000029313 ENSMUST00000152145 Aff1 protein_coding Interval_9670 chr1 160905813 160907450 + 0 NA exon (ENSMUSG00000040423.11, exon 1 of 20) protein_coding-exon (ENSMUSG00000040423.11, exon 1 of 20) 213 ENSMUSG00000040423.11 ENSMUSG00000040423 ENSMUST00000161708 Rc3h1 protein_coding Interval_114660 chr4 83549148 83550082 + 0 NA promoter-TSS (ENSMUSG00000052407.17) protein_coding-promoter-TSS (ENSMUSG00000052407.17) -21847 ENSMUSG00000064606.1 ENSMUSG00000064606 ENSMUST00000082672 Gm25899 snRNA Interval_95157 chr2 104419753 104419960 + 0 NA Intergenic Intergenic -8843 ENSMUSG00000068373.15 ENSMUSG00000068373 ENSMUST00000149165 D430041D05Rik protein_coding Interval_121032 chr4 152332787 152333775 + 0 NA TTS (ENSMUSG00000028936.15) protein_coding-TTS (ENSMUSG00000028936.15) -5370 ENSMUSG00000005045.16 ENSMUSG00000005045 ENSMUST00000124423 Chd5 protein_coding Interval_95871 chr2 117576527 117576755 + 0 NA Intergenic Intergenic -158944 ENSMUSG00000085681.1 ENSMUSG00000085681 ENSMUST00000138372 Gm13982 lincRNA Interval_136983 chr6 65460945 65461272 + 0 NA Intergenic Intergenic 28948 ENSMUSG00000107596.1 ENSMUSG00000107596 ENSMUST00000204311 Gm18913 processed_pseudogene Interval_174091 chrX 134621486 134622175 + 0 NA Intergenic Intergenic 3914 ENSMUSG00000085226.1 ENSMUSG00000085226 ENSMUST00000137737 Gm7855 processed_pseudogene Interval_47600 chr13 89763227 89763513 + 0 NA intron (ENSMUSG00000089940.1, intron 1 of 1) antisense-intron (ENSMUSG00000089940.1, intron 1 of 1) -22973 ENSMUSG00000021614.16 ENSMUSG00000021614 ENSMUST00000162715 Vcan protein_coding Interval_79865 chr18 35634780 35635324 + 0 NA Intergenic Intergenic -7856 ENSMUSG00000024354.13 ENSMUSG00000024354 ENSMUST00000236196 Slc23a1 protein_coding Interval_161242 chr8 119123539 119123814 + 0 NA intron (ENSMUSG00000031841.19, intron 7 of 7) protein_coding-intron (ENSMUSG00000031841.19, intron 7 of 13) -27789 ENSMUSG00000031841.19 ENSMUSG00000031841 ENSMUST00000151842 Cdh13 protein_coding Interval_142472 chr6 142701452 142702718 + 0 NA intron (ENSMUSG00000030249.15, intron 1 of 38) protein_coding-intron (ENSMUSG00000030249.15, intron 1 of 39) 188 ENSMUSG00000030249.15 ENSMUSG00000030249 ENSMUST00000204870 Abcc9 protein_coding Interval_15184 chr10 43207076 43208051 + 0 NA Intergenic Intergenic -14173 ENSMUSG00000038240.13 ENSMUSG00000038240 ENSMUST00000162008 Pdss2 protein_coding Interval_59003 chr15 41609086 41610045 + 0 NA intron (ENSMUSG00000022307.16, intron 2 of 15) protein_coding-intron (ENSMUSG00000022307.16, intron 2 of 15) 179346 ENSMUSG00000097232.1 ENSMUSG00000097232 ENSMUST00000180418 Gm26854 antisense Interval_10823 chr1 175615129 175615540 + 0 NA intron (ENSMUSG00000026526.14, intron 4 of 4) protein_coding-intron (ENSMUSG00000026526.14, intron 3 of 9) -5621 ENSMUSG00000026526.14 ENSMUSG00000026526 ENSMUST00000154956 Fh1 protein_coding Interval_114319 chr4 72643325 72644592 + 0 NA Intergenic Intergenic 101292 ENSMUSG00000083372.1 ENSMUSG00000083372 ENSMUST00000117763 Gm11235 processed_pseudogene Interval_127109 chr5 100349442 100349656 + 0 NA intron (ENSMUSG00000085915.1, intron 1 of 4) unprocessed_pseudogene-intron (ENSMUSG00000085915.1, intron 1 of 4) 5570 ENSMUSG00000085915.1 ENSMUSG00000085915 ENSMUST00000150506 Gm8091 unprocessed_pseudogene Interval_49824 chr13 116705063 116706678 + 0 NA Intergenic Intergenic -28165 ENSMUSG00000114731.1 ENSMUSG00000114731 ENSMUST00000224048 Gm47914 lincRNA Interval_49414 chr13 111807734 111809943 + 0 NA promoter-TSS (ENSMUSG00000021754.17) protein_coding-promoter-TSS (ENSMUSG00000021754.17) -1630 ENSMUSG00000085204.1 ENSMUSG00000085204 ENSMUST00000153958 Gm15327 processed_transcript Interval_85474 chr19 27061862 27062206 + 0 NA Intergenic Intergenic 36053 ENSMUSG00000118313.1 ENSMUSG00000118313 ENSMUST00000236369 Gm50121 processed_pseudogene Interval_174514 chrX 155227753 155228972 + 0 NA Intergenic Intergenic -9136 ENSMUSG00000084065.1 ENSMUSG00000084065 ENSMUST00000117062 Gm15159 processed_pseudogene Interval_10571 chr1 171940146 171941244 + 0 NA intron (ENSMUSG00000015314.10, intron 6 of 6) protein_coding-intron (ENSMUSG00000015314.10, intron 6 of 7) -21339 ENSMUSG00000104413.1 ENSMUSG00000104413 ENSMUST00000191636 Gm37065 antisense Interval_112647 chr4 43767836 43768638 + 0 NA promoter-TSS (ENSMUSG00000083417.1) unprocessed_pseudogene-promoter-TSS (ENSMUSG00000083417.1) -460 ENSMUSG00000083417.1 ENSMUSG00000083417 ENSMUST00000120783 Olfr269-ps1 unprocessed_pseudogene Interval_152080 chr7 128882109 128882993 + 0 NA intron (ENSMUSG00000108600.1, intron 4 of 5) lincRNA-intron (ENSMUSG00000108600.1, intron 4 of 5) 56204 ENSMUSG00000080363.1 ENSMUSG00000080363 ENSMUST00000116713 Gm25778 miRNA Interval_9111 chr1 153677522 153678184 + 0 NA intron (ENSMUSG00000042671.12, intron 5 of 6) protein_coding-intron (ENSMUSG00000042671.12, intron 5 of 6) 12579 ENSMUSG00000042671.12 ENSMUSG00000042671 ENSMUST00000147794 Rgs8 protein_coding Interval_127249 chr5 101861410 101862989 + 0 NA intron (ENSMUSG00000043940.15, intron 50 of 64) protein_coding-intron (ENSMUSG00000043940.15, intron 52 of 66) 24747 ENSMUSG00000092354.7 ENSMUSG00000092354 ENSMUST00000174312 Gm20548 antisense Interval_116269 chr4 109173697 109173923 + 0 NA intron (ENSMUSG00000028559.17, intron 1 of 23) protein_coding-intron (ENSMUSG00000028559.17, intron 1 of 23) -12613 ENSMUSG00000088014.1 ENSMUSG00000088014 ENSMUST00000157389 Gm23743 misc_RNA Interval_61473 chr15 81839376 81839881 + 0 NA Intergenic Intergenic 4085 ENSMUSG00000069439.3 ENSMUSG00000069439 ENSMUST00000092020 Gm8444 processed_pseudogene Interval_168809 chr9 87319350 87319656 + 0 NA Intergenic Intergenic -74747 ENSMUSG00000099385.1 ENSMUSG00000099385 ENSMUST00000188230 Gm9540 processed_pseudogene Interval_108627 chr3 129640021 129640319 + 0 NA Intergenic Intergenic 44071 ENSMUSG00000092701.1 ENSMUSG00000092701 ENSMUST00000174960 Gm24515 miRNA Interval_71988 chr17 27451469 27452353 + 0 NA exon (ENSMUSG00000063239.17, exon 5 of 11) protein_coding-exon (ENSMUSG00000063239.17, exon 5 of 11) 14382 ENSMUSG00000116682.1 ENSMUSG00000116682 ENSMUST00000231804 Gm49789 TEC Interval_4988 chr1 83724590 83724894 + 0 NA intron (ENSMUSG00000100580.6, intron 3 of 4) lincRNA-intron (ENSMUSG00000100580.6, intron 3 of 4) -71170 ENSMUSG00000094946.1 ENSMUSG00000094946 ENSMUST00000178653 Gm25754 miRNA Interval_116623 chr4 116140667 116142122 + 0 NA intron (ENSMUSG00000028701.4, intron 1 of 1) protein_coding-intron (ENSMUSG00000028701.4, intron 1 of 1) 9944 ENSMUSG00000028701.4 ENSMUSG00000028701 ENSMUST00000135982 Lurap1 protein_coding Interval_78640 chr18 16091641 16091934 + 0 NA Intergenic Intergenic 52663 ENSMUSG00000117532.1 ENSMUSG00000117532 ENSMUST00000234268 Gm50076 lincRNA Interval_12590 chr10 3662536 3663262 + 0 NA Intergenic Intergenic 122611 ENSMUSG00000019762.4 ENSMUSG00000019762 ENSMUST00000141745 Iyd protein_coding Interval_17262 chr10 75416369 75417658 + 0 NA exon (ENSMUSG00000033416.15, exon 4 of 4) protein_coding-exon (ENSMUSG00000033416.15, exon 4 of 4) 15898 ENSMUSG00000033427.14 ENSMUSG00000033427 ENSMUST00000129946 Upb1 protein_coding Interval_146015 chr7 43224630 43224897 + 0 NA intron (ENSMUSG00000074887.4, intron 3 of 3) lincRNA-intron (ENSMUSG00000074887.4, intron 2 of 2) 10724 ENSMUSG00000074887.4 ENSMUSG00000074887 ENSMUST00000163106 EU599041 lincRNA Interval_87370 chr19 47985231 47986453 + 0 NA intron (ENSMUSG00000046585.9, intron 13 of 17) protein_coding-intron (ENSMUSG00000046585.9, intron 13 of 17) 48167 ENSMUSG00000046585.9 ENSMUSG00000046585 ENSMUST00000066308 Cfap58 protein_coding Interval_13541 chr10 19347245 19347637 + 0 NA Intergenic Intergenic -9092 ENSMUSG00000045591.6 ENSMUSG00000045591 ENSMUST00000053225 Olig3 protein_coding Interval_112382 chr4 40947620 40948861 + 0 NA promoter-TSS (ENSMUSG00000028416.13) protein_coding-promoter-TSS (ENSMUSG00000028416.13) 54 ENSMUSG00000028416.13 ENSMUSG00000028416 ENSMUST00000030125 Bag1 protein_coding Interval_120631 chr4 149779432 149781606 + 0 NA exon (ENSMUSG00000084807.1, exon 1 of 2) lincRNA-exon (ENSMUSG00000084807.1, exon 1 of 2) 195 ENSMUSG00000084807.1 ENSMUSG00000084807 ENSMUST00000134059 Gm13073 lincRNA Interval_79361 chr18 31196236 31196418 + 0 NA intron (ENSMUSG00000057455.12, intron 2 of 3) protein_coding-intron (ENSMUSG00000057455.12, intron 2 of 3) 16405 ENSMUSG00000057455.12 ENSMUSG00000057455 ENSMUST00000139924 Rit2 protein_coding Interval_21864 chr11 4826630 4827120 + 0 NA intron (ENSMUSG00000009073.16, intron 1 of 8) protein_coding-intron (ENSMUSG00000009073.16, intron 1 of 16) 22250 ENSMUSG00000009073.16 ENSMUSG00000009073 ENSMUST00000172305 Nf2 protein_coding Interval_87667 chr19 54113380 54115488 + 0 NA Intergenic Intergenic 29875 ENSMUSG00000117921.1 ENSMUSG00000117921 ENSMUST00000236398 Gm50186 lincRNA Interval_95240 chr2 105108713 105109167 + 0 NA intron (ENSMUSG00000074987.9, intron 1 of 3) antisense-intron (ENSMUSG00000074987.9, intron 1 of 6) 13111 ENSMUSG00000099166.1 ENSMUSG00000099166 ENSMUST00000184714 Gm27715 misc_RNA Interval_64949 chr16 17467044 17467388 + 0 NA intron (ENSMUSG00000006134.4, intron 1 of 1) protein_coding-intron (ENSMUSG00000006134.4, intron 1 of 2) 14740 ENSMUSG00000006134.4 ENSMUSG00000006134 ENSMUST00000231629 Crkl protein_coding Interval_150986 chr7 117419016 117419320 + 0 NA intron (ENSMUSG00000030657.11, intron 1 of 6) protein_coding-intron (ENSMUSG00000030657.11, intron 1 of 11) 37306 ENSMUSG00000108693.1 ENSMUSG00000108693 ENSMUST00000205957 Gm45153 TEC Interval_78730 chr18 19665970 19666229 + 0 NA Intergenic Intergenic -40994 ENSMUSG00000087960.1 ENSMUSG00000087960 ENSMUST00000157335 Gm25392 misc_RNA Interval_50889 chr14 20502890 20503620 + 0 NA exon (ENSMUSG00000021816.11, exon 13 of 14) protein_coding-exon (ENSMUSG00000021816.11, exon 13 of 14) -6354 ENSMUSG00000021815.4 ENSMUSG00000021815 ENSMUST00000022353 Mss51 protein_coding Interval_169940 chr9 103091546 103092917 + 0 NA intron (ENSMUSG00000032548.14, intron 13 of 13) protein_coding-intron (ENSMUSG00000032548.14, intron 13 of 13) -6705 ENSMUSG00000110765.1 ENSMUSG00000110765 ENSMUST00000216778 Gm47468 antisense Interval_162964 chr9 13800119 13800332 + 0 NA intron (ENSMUSG00000031918.16, intron 12 of 15) protein_coding-intron (ENSMUSG00000031918.16, intron 11 of 14) 18684 ENSMUSG00000031922.12 ENSMUSG00000031922 ENSMUST00000124524 Cep57 protein_coding Interval_138783 chr6 91826704 91826926 + 0 NA intron (ENSMUSG00000030098.15, intron 1 of 23) protein_coding-intron (ENSMUSG00000030098.15, intron 1 of 23) -30555 ENSMUSG00000030098.15 ENSMUSG00000030098 ENSMUST00000205964 Grip2 protein_coding Interval_97893 chr2 145011986 145012240 + 0 NA Intergenic Intergenic -80435 ENSMUSG00000082858.1 ENSMUSG00000082858 ENSMUST00000119843 Gm11746 processed_pseudogene Interval_157415 chr8 70222028 70223960 + 0 NA promoter-TSS (ENSMUSG00000002343.11) protein_coding-promoter-TSS (ENSMUSG00000002343.11) 2183 ENSMUSG00000002343.11 ENSMUSG00000002343 ENSMUST00000130319 Armc6 protein_coding Interval_46054 chr13 60627392 60629122 + 0 NA exon (ENSMUSG00000114501.1, exon 1 of 1) TEC-exon (ENSMUSG00000114501.1, exon 1 of 1) 5290 ENSMUSG00000114501.1 ENSMUSG00000114501 ENSMUST00000225376 Gm48582 TEC Interval_89132 chr2 17098802 17099025 + 0 NA Intergenic Intergenic -70312 ENSMUSG00000081525.1 ENSMUSG00000081525 ENSMUST00000118746 Gm13325 processed_pseudogene Interval_99379 chr2 160443255 160444081 + 0 NA Intergenic Intergenic -76603 ENSMUSG00000074622.4 ENSMUSG00000074622 ENSMUST00000099126 Mafb protein_coding Interval_145613 chr7 36027987 36028333 + 0 NA Intergenic Intergenic -69218 ENSMUSG00000108711.1 ENSMUSG00000108711 ENSMUST00000205504 Gm38991 lincRNA Interval_169369 chr9 96740818 96741782 + 0 NA intron (ENSMUSG00000040433.16, intron 2 of 5) protein_coding-intron (ENSMUSG00000040433.16, intron 2 of 3) 11531 ENSMUSG00000040433.16 ENSMUSG00000040433 ENSMUST00000143403 Zbtb38 protein_coding Interval_20075 chr10 113330222 113330519 + 0 NA Intergenic Intergenic -93814 ENSMUSG00000112767.1 ENSMUSG00000112767 ENSMUST00000218916 Gm47532 lincRNA Interval_123072 chr5 29409095 29409478 + 0 NA Intergenic Intergenic 30587 ENSMUSG00000097561.1 ENSMUSG00000097561 ENSMUST00000181005 4632411P08Rik lincRNA Interval_44856 chr13 49127668 49128166 + 0 NA intron (ENSMUSG00000037989.15, intron 2 of 27) protein_coding-intron (ENSMUSG00000037989.15, intron 2 of 27) 20095 ENSMUSG00000037989.15 ENSMUSG00000037989 ENSMUST00000159633 Wnk2 protein_coding Interval_98234 chr2 150290137 150290525 + 0 NA Intergenic Intergenic -15430 ENSMUSG00000084320.2 ENSMUSG00000084320 ENSMUST00000120921 Gm14125 transcribed_processed_pseudogene Interval_126456 chr5 88668671 88668979 + 0 NA intron (ENSMUSG00000044221.14, intron 5 of 5) protein_coding-intron (ENSMUSG00000044221.14, intron 5 of 9) 6845 ENSMUSG00000044221.14 ENSMUSG00000044221 ENSMUST00000137725 Grsf1 protein_coding Interval_53590 chr14 59623991 59626398 + 0 NA promoter-TSS (ENSMUSG00000044461.6) protein_coding-promoter-TSS (ENSMUSG00000044461.6) -1995 ENSMUSG00000044461.6 ENSMUSG00000044461 ENSMUST00000224155 Shisa2 protein_coding Interval_158583 chr8 84629874 84630250 + 0 NA intron (ENSMUSG00000034656.18, intron 42 of 48) protein_coding-intron (ENSMUSG00000034656.18, intron 40 of 46) -12878 ENSMUSG00000086067.1 ENSMUSG00000086067 ENSMUST00000127527 Gm16183 antisense Interval_46727 chr13 69656780 69657042 + 0 NA Intergenic Intergenic -1399 ENSMUSG00000113790.1 ENSMUSG00000113790 ENSMUST00000222550 Gm17872 processed_pseudogene Interval_13421 chr10 18084757 18085694 + 0 NA intron (ENSMUSG00000019854.17, intron 1 of 5) protein_coding-intron (ENSMUSG00000019854.17, intron 1 of 19) -18987 ENSMUSG00000019854.17 ENSMUSG00000019854 ENSMUST00000150533 Reps1 protein_coding Interval_75851 chr17 71819713 71820147 + 0 NA intron (ENSMUSG00000024059.10, intron 9 of 16) protein_coding-intron (ENSMUSG00000024059.10, intron 8 of 15) -8577 ENSMUSG00000024059.10 ENSMUSG00000024059 ENSMUST00000230290 Clip4 protein_coding Interval_6771 chr1 119388699 119389995 + 0 NA Intergenic Intergenic 32901 ENSMUSG00000037035.5 ENSMUSG00000037035 ENSMUST00000038765 Inhbb protein_coding Interval_45787 chr13 58071304 58071557 + 0 NA intron (ENSMUSG00000014164.15, intron 4 of 14) protein_coding-intron (ENSMUSG00000014164.15, intron 6 of 16) 42162 ENSMUSG00000014164.15 ENSMUSG00000014164 ENSMUST00000160860 Klhl3 protein_coding Interval_126201 chr5 82179719 82180454 + 0 NA Intergenic Intergenic -55376 ENSMUSG00000099863.1 ENSMUSG00000099863 ENSMUST00000186079 1700031L13Rik protein_coding Interval_19258 chr10 95852729 95853032 + 0 NA Intergenic Intergenic -9950 ENSMUSG00000110353.1 ENSMUSG00000110353 ENSMUST00000210336 Gm33543 protein_coding Interval_108037 chr3 120858140 120858849 + 0 NA intron (ENSMUSG00000098097.7, intron 1 of 11) lincRNA-intron (ENSMUSG00000098097.7, intron 1 of 3) 28238 ENSMUSG00000098097.7 ENSMUSG00000098097 ENSMUST00000182099 6530403H02Rik lincRNA Interval_164493 chr9 37469087 37469340 + 0 NA Intergenic Intergenic 9430 ENSMUSG00000111702.1 ENSMUSG00000111702 ENSMUST00000214167 Gm47945 unprocessed_pseudogene Interval_10653 chr1 172468200 172468941 + 0 NA intron (ENSMUSG00000103357.1, intron 3 of 3) transcribed_processed_pseudogene-intron (ENSMUSG00000103357.1, intron 3 of 3) -5464 ENSMUSG00000103357.1 ENSMUSG00000103357 ENSMUST00000194187 Gm7804 transcribed_processed_pseudogene Interval_71745 chr17 25828750 25829470 + 0 NA promoter-TSS (ENSMUSG00000025736.15) protein_coding-promoter-TSS (ENSMUSG00000025736.15) 58 ENSMUSG00000025736.15 ENSMUSG00000025736 ENSMUST00000123560 Jmjd8 protein_coding Interval_168764 chr9 86777931 86778474 + 0 NA intron (ENSMUSG00000033419.16, intron 22 of 27) protein_coding-intron (ENSMUSG00000033419.16, intron 24 of 28) 8653 ENSMUSG00000103891.1 ENSMUSG00000103891 ENSMUST00000192170 Gm37941 TEC Interval_54101 chr14 65299062 65299659 + 0 NA exon (ENSMUSG00000034532.9, exon 6 of 7) protein_coding-exon (ENSMUSG00000034532.9, exon 6 of 7) -26971 ENSMUSG00000114209.1 ENSMUSG00000114209 ENSMUST00000223901 Gm48433 lincRNA Interval_89787 chr2 25437467 25437836 + 0 NA intron (ENSMUSG00000026944.18, intron 14 of 47) protein_coding-intron (ENSMUSG00000026944.18, intron 14 of 47) -3657 ENSMUSG00000026944.18 ENSMUSG00000026944 ENSMUST00000141065 Abca2 protein_coding Interval_142914 chr6 146912801 146913688 + 0 NA intron (ENSMUSG00000016487.15, intron 1 of 27) protein_coding-intron (ENSMUSG00000016487.15, intron 1 of 26) 41170 ENSMUSG00000040163.14 ENSMUSG00000040163 ENSMUST00000111622 1700034J05Rik protein_coding Interval_72988 chr17 33991815 33992625 + 0 NA Intergenic Intergenic 8031 ENSMUSG00000061232.16 ENSMUSG00000061232 ENSMUST00000236877 H2-K1 protein_coding Interval_139158 chr6 96459069 96459740 + 0 NA intron (ENSMUSG00000059187.12, intron 2 of 4) protein_coding-intron (ENSMUSG00000059187.12, intron 1 of 3) 10127 ENSMUSG00000065239.1 ENSMUSG00000065239 ENSMUST00000083305 Gm22971 snRNA Interval_92697 chr2 62826490 62827263 + 0 NA intron (ENSMUSG00000059742.10, intron 6 of 6) protein_coding-intron (ENSMUSG00000059742.10, intron 6 of 15) 17689 ENSMUSG00000085029.1 ENSMUSG00000085029 ENSMUST00000137221 Gm13569 antisense Interval_73306 chr17 36109295 36111673 + 0 NA promoter-TSS (ENSMUSG00000092365.2) antisense-promoter-TSS (ENSMUSG00000092365.2) -942 ENSMUSG00000092365.2 ENSMUSG00000092365 ENSMUST00000174728 BC023719 antisense Interval_172222 chrX 10484756 10486158 + 0 NA intron (ENSMUSG00000058254.12, intron 1 of 6) protein_coding-intron (ENSMUSG00000058254.12, intron 1 of 7) 299 ENSMUSG00000058254.12 ENSMUSG00000058254 ENSMUST00000149982 Tspan7 protein_coding Interval_15740 chr10 55504348 55505339 + 0 NA Intergenic Intergenic 380481 ENSMUSG00000112755.1 ENSMUSG00000112755 ENSMUST00000219650 Gm46190 processed_pseudogene Interval_531 chr1 7032872 7033071 + 0 NA Intergenic Intergenic -2944 ENSMUSG00000103629.1 ENSMUSG00000103629 ENSMUST00000195648 Gm5694 processed_pseudogene Interval_9993 chr1 164742797 164743190 + 0 NA Intergenic Intergenic -30452 ENSMUSG00000102163.1 ENSMUSG00000102163 ENSMUST00000193985 Gm36945 lincRNA Interval_60997 chr15 78595409 78595688 + 0 NA Intergenic Intergenic -1505 ENSMUSG00000018008.8 ENSMUSG00000018008 ENSMUST00000230583 Cyth4 protein_coding Interval_126790 chr5 92950645 92950992 + 0 NA exon (ENSMUSG00000029381.16, exon 6 of 10) protein_coding-exon (ENSMUSG00000029381.16, exon 6 of 10) -53013 ENSMUSG00000106930.1 ENSMUSG00000106930 ENSMUST00000200896 Gm6450 processed_pseudogene Interval_144029 chr7 19064620 19066000 + 0 NA exon (ENSMUSG00000040866.13, exon 3 of 6) protein_coding-exon (ENSMUSG00000040866.13, exon 3 of 6) 7915 ENSMUSG00000040866.13 ENSMUSG00000040866 ENSMUST00000144991 Rsph6a protein_coding Interval_80604 chr18 44561929 44563186 + 0 NA intron (ENSMUSG00000071856.10, intron 3 of 18) protein_coding-intron (ENSMUSG00000071856.10, intron 3 of 18) -99546 ENSMUSG00000097610.2 ENSMUSG00000097610 ENSMUST00000202771 A930012L18Rik antisense Interval_153184 chr7 142224008 142224242 + 0 NA exon (ENSMUSG00000109581.1, exon 1 of 1) processed_pseudogene-exon (ENSMUSG00000109581.1, exon 1 of 1) 604 ENSMUSG00000109581.1 ENSMUSG00000109581 ENSMUST00000209791 Gm19094 processed_pseudogene Interval_101461 chr2 181561727 181562288 + 0 NA Intergenic Intergenic 12469 ENSMUSG00000089917.7 ENSMUSG00000089917 ENSMUST00000131949 Uckl1 protein_coding Interval_32207 chr11 106159141 106161513 + 0 NA promoter-TSS (ENSMUSG00000040699.13) protein_coding-promoter-TSS (ENSMUSG00000040699.13) 134 ENSMUSG00000075480.2 ENSMUSG00000075480 ENSMUST00000100326 Gm10840 TEC Interval_53384 chr14 56817375 56818088 + 0 NA Intergenic Intergenic 5742 ENSMUSG00000100017.2 ENSMUSG00000100017 ENSMUST00000186474 2410022M11Rik bidirectional_promoter_lncRNA Interval_9468 chr1 157445028 157445424 + 0 NA Intergenic Intergenic -16726 ENSMUSG00000033488.11 ENSMUSG00000033488 ENSMUST00000194220 Cryzl2 protein_coding Interval_44385 chr13 44509931 44510797 + 0 NA exon (ENSMUSG00000113492.1, exon 2 of 2) lincRNA-exon (ENSMUSG00000113492.1, exon 2 of 2) 806 ENSMUSG00000113492.1 ENSMUSG00000113492 ENSMUST00000222493 Gm47792 lincRNA Interval_173367 chrX 85084458 85084913 + 0 NA intron (ENSMUSG00000045103.19, intron 35 of 50) protein_coding-intron (ENSMUSG00000045103.19, intron 2 of 17) 151881 ENSMUSG00000081379.1 ENSMUSG00000081379 ENSMUST00000118249 Gm14771 processed_pseudogene Interval_117866 chr4 126739944 126740745 + 0 NA Intergenic Intergenic -4104 ENSMUSG00000042477.7 ENSMUSG00000042477 ENSMUST00000048194 Tfap2e protein_coding Interval_129365 chr5 119563028 119564640 + 0 NA Intergenic Intergenic 34370 ENSMUSG00000106991.1 ENSMUSG00000106991 ENSMUST00000202546 Gm43399 TEC Interval_146860 chr7 53716648 53716933 + 0 NA Intergenic Intergenic 175099 ENSMUSG00000099176.1 ENSMUSG00000099176 ENSMUST00000184140 Mir6238 miRNA Interval_110767 chr4 8180123 8181035 + 0 NA intron (ENSMUSG00000041261.9, intron 7 of 8) protein_coding-intron (ENSMUSG00000041261.9, intron 7 of 8) -13226 ENSMUSG00000079993.2 ENSMUSG00000079993 ENSMUST00000116110 Gm11799 processed_pseudogene Interval_146239 chr7 44901075 44901869 + 0 NA TTS (ENSMUSG00000011658.16) protein_coding-TTS (ENSMUSG00000011658.16) 222 ENSMUSG00000060279.14 ENSMUSG00000060279 ENSMUST00000208285 Ap2a1 protein_coding Interval_156639 chr8 56218667 56219896 + 0 NA Intergenic Intergenic -75304 ENSMUSG00000031613.9 ENSMUSG00000031613 ENSMUST00000034026 Hpgd protein_coding Interval_62099 chr15 86607675 86608528 + 0 NA Intergenic Intergenic -96190 ENSMUSG00000116040.1 ENSMUSG00000116040 ENSMUST00000229409 Gm49464 lincRNA Interval_136657 chr6 57237912 57238100 + 0 NA exon (ENSMUSG00000114982.1, exon 2 of 2) protein_coding-exon (ENSMUSG00000114982.1, exon 2 of 2) 6320 ENSMUSG00000114982.1 ENSMUSG00000114982 ENSMUST00000177435 Vmn1r14 protein_coding Interval_30778 chr11 96413585 96413853 + 0 NA Intergenic Intergenic 21607 ENSMUSG00000075587.5 ENSMUSG00000075587 ENSMUST00000117614 Gm11531 processed_pseudogene Interval_33662 chr11 117790138 117792834 + 0 NA promoter-TSS (ENSMUSG00000087669.1) antisense-promoter-TSS (ENSMUSG00000087669.1) -173 ENSMUSG00000087669.1 ENSMUSG00000087669 ENSMUST00000125577 Gm11724 antisense Interval_46925 chr13 73466756 73468097 + 0 NA promoter-TSS (ENSMUSG00000021608.15) protein_coding-promoter-TSS (ENSMUSG00000021608.15) -4325 ENSMUSG00000021608.15 ENSMUSG00000021608 ENSMUST00000222881 Lpcat1 protein_coding Interval_69128 chr16 90823775 90825420 + 0 NA Intergenic Intergenic -2122 ENSMUSG00000039903.18 ENSMUSG00000039903 ENSMUST00000154180 Eva1c protein_coding Interval_121836 chr5 8710704 8713559 + 0 NA intron (ENSMUSG00000040584.8, intron 14 of 27) protein_coding-intron (ENSMUSG00000040584.8, intron 14 of 27) -7718 ENSMUSG00000040584.8 ENSMUSG00000040584 ENSMUST00000138138 Abcb1a protein_coding Interval_95782 chr2 116135181 116135348 + 0 NA Intergenic Intergenic -59168 ENSMUSG00000103562.1 ENSMUSG00000103562 ENSMUST00000195368 2810405F15Rik TEC Interval_150741 chr7 114039365 114039767 + 0 NA intron (ENSMUSG00000038156.16, intron 15 of 15) protein_coding-intron (ENSMUSG00000038156.16, intron 15 of 15) -47332 ENSMUSG00000110248.1 ENSMUSG00000110248 ENSMUST00000210417 Gm45615 antisense Interval_145599 chr7 35810540 35811245 + 0 NA intron (ENSMUSG00000044997.3, intron 1 of 2) antisense-intron (ENSMUSG00000044997.3, intron 1 of 2) 8300 ENSMUSG00000044997.3 ENSMUSG00000044997 ENSMUST00000052454 E130304I02Rik antisense Interval_65586 chr16 23689745 23690968 + 0 NA Intergenic Intergenic 28399 ENSMUSG00000083681.1 ENSMUSG00000083681 ENSMUST00000120629 Gm6640 processed_pseudogene Interval_157103 chr8 65208183 65210059 + 0 NA Intergenic Intergenic 24877 ENSMUSG00000110283.1 ENSMUSG00000110283 ENSMUST00000211021 Gm45249 processed_pseudogene Interval_151055 chr7 118215125 118215439 + 0 NA intron (ENSMUSG00000030655.15, intron 1 of 12) protein_coding-intron (ENSMUSG00000030655.15, intron 1 of 62) 16075 ENSMUSG00000109045.1 ENSMUSG00000109045 ENSMUST00000207096 Gm45084 TEC Interval_49121 chr13 108219311 108220084 + 0 NA TTS (ENSMUSG00000114519.1) processed_pseudogene-TTS (ENSMUSG00000114519.1) 1144 ENSMUSG00000114519.1 ENSMUSG00000114519 ENSMUST00000224978 Gm32376 processed_pseudogene Interval_154401 chr8 15641499 15641937 + 0 NA intron (ENSMUSG00000110217.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000110217.1, intron 1 of 2) 11737 ENSMUSG00000110201.1 ENSMUSG00000110201 ENSMUST00000211202 Gm45675 TEC Interval_163601 chr9 22448534 22449620 + 0 NA intron (ENSMUSG00000032239.10, intron 6 of 6) protein_coding-intron (ENSMUSG00000032239.10, intron 5 of 5) -5213 ENSMUSG00000091159.1 ENSMUSG00000091159 ENSMUST00000168332 Gm17545 protein_coding Interval_42929 chr13 21456163 21457004 + 0 NA Intergenic Intergenic -2853 ENSMUSG00000022228.14 ENSMUSG00000022228 ENSMUST00000110485 Zscan26 protein_coding Interval_140331 chr6 116632233 116632433 + 0 NA TTS (ENSMUSG00000042129.8) protein_coding-TTS (ENSMUSG00000042129.8) 2111 ENSMUSG00000107428.1 ENSMUSG00000107428 ENSMUST00000204559 Gm44154 TEC Interval_158424 chr8 83647452 83648203 + 0 NA Intergenic Intergenic -4871 ENSMUSG00000019433.9 ENSMUSG00000019433 ENSMUST00000212463 Gipc1 protein_coding Interval_103114 chr3 35478136 35478399 + 0 NA Intergenic Intergenic 59533 ENSMUSG00000106496.1 ENSMUSG00000106496 ENSMUST00000199038 Gm7733 processed_pseudogene Interval_9716 chr1 161239359 161240101 + 0 NA TTS (ENSMUSG00000026701.15) protein_coding-TTS (ENSMUSG00000026701.15) 11432 ENSMUSG00000026701.15 ENSMUSG00000026701 ENSMUST00000130867 Prdx6 protein_coding Interval_116149 chr4 108163090 108164185 + 0 NA Intergenic Intergenic -9026 ENSMUSG00000028601.18 ENSMUSG00000028601 ENSMUST00000106691 Echdc2 protein_coding Interval_58697 chr15 37189296 37190175 + 0 NA Intergenic Intergenic -7034 ENSMUSG00000115621.1 ENSMUSG00000115621 ENSMUST00000226193 Gm8664 processed_pseudogene Interval_27436 chr11 67675643 67676625 + 0 NA intron (ENSMUSG00000033066.16, intron 7 of 9) protein_coding-intron (ENSMUSG00000049928.15, intron 8 of 9) -19192 ENSMUSG00000020907.1 ENSMUSG00000020907 ENSMUST00000021290 Rcvrn protein_coding Interval_76826 chr17 84350981 84351943 + 0 NA intron (ENSMUSG00000024251.10, intron 11 of 14) protein_coding-intron (ENSMUSG00000024251.10, intron 26 of 37) -37783 ENSMUSG00000024251.10 ENSMUSG00000024251 ENSMUST00000234313 Thada protein_coding Interval_169446 chr9 97402607 97403188 + 0 NA Intergenic Intergenic -32939 ENSMUSG00000032451.6 ENSMUSG00000032451 ENSMUST00000035026 Trim42 protein_coding Interval_56243 chr14 114791615 114792118 + 0 NA Intergenic Intergenic 29359 ENSMUSG00000103140.1 ENSMUSG00000103140 ENSMUST00000194590 Gm37495 TEC Interval_42315 chr13 12028594 12028919 + 0 NA intron (ENSMUSG00000021313.16, intron 1 of 2) protein_coding-intron (ENSMUSG00000021313.16, intron 1 of 104) 23299 ENSMUSG00000112947.1 ENSMUSG00000112947 ENSMUST00000220599 Gm47493 TEC Interval_32198 chr11 106065697 106066817 + 0 NA promoter-TSS (ENSMUSG00000085255.1) antisense-promoter-TSS (ENSMUSG00000085255.1) 48 ENSMUSG00000085255.1 ENSMUSG00000085255 ENSMUST00000140736 Taco1os antisense Interval_78187 chr18 9983348 9983659 + 0 NA promoter-TSS (ENSMUSG00000024287.8) protein_coding-promoter-TSS (ENSMUSG00000024287.8) -2786 ENSMUSG00000024287.8 ENSMUSG00000024287 ENSMUST00000234111 Thoc1 protein_coding Interval_136910 chr6 64313073 64313588 + 0 NA intron (ENSMUSG00000071424.10, intron 9 of 15) protein_coding-intron (ENSMUSG00000071424.10, intron 9 of 15) -100318 ENSMUSG00000064775.1 ENSMUSG00000064775 ENSMUST00000082841 Gm25205 snRNA Interval_89703 chr2 24784832 24785053 + 0 NA Intergenic Intergenic 78981 ENSMUSG00000036893.17 ENSMUSG00000036893 ENSMUST00000150379 Ehmt1 protein_coding Interval_2537 chr1 40029349 40029978 + 0 NA Intergenic Intergenic 20705 ENSMUSG00000102985.1 ENSMUSG00000102985 ENSMUST00000193054 4930456G14Rik TEC Interval_15390 chr10 45344082 45345008 + 0 NA intron (ENSMUSG00000071317.4, intron 3 of 7) protein_coding-intron (ENSMUSG00000071317.4, intron 3 of 7) -8963 ENSMUSG00000071317.4 ENSMUSG00000071317 ENSMUST00000213557 Bves protein_coding Interval_144820 chr7 28446388 28448821 + 0 NA exon (ENSMUSG00000060791.15, exon 4 of 4) protein_coding-exon (ENSMUSG00000060791.15, exon 4 of 4) 4497 ENSMUSG00000060791.15 ENSMUSG00000060791 ENSMUST00000138741 Gmfg protein_coding Interval_17050 chr10 70871721 70873522 + 0 NA promoter-TSS (ENSMUSG00000112032.1) lincRNA-promoter-TSS (ENSMUSG00000112032.1) -201 ENSMUSG00000112032.1 ENSMUSG00000112032 ENSMUST00000217867 Gm48036 lincRNA Interval_118221 chr4 129599807 129601147 + 0 NA promoter-TSS (ENSMUSG00000028797.20) protein_coding-promoter-TSS (ENSMUSG00000028797.20) 122 ENSMUSG00000028798.16 ENSMUSG00000028798 ENSMUST00000143384 Eif3i protein_coding Interval_58316 chr15 32298635 32298909 + 0 NA intron (ENSMUSG00000022231.10, intron 1 of 7) protein_coding-intron (ENSMUSG00000022231.10, intron 1 of 22) 53947 ENSMUSG00000022231.10 ENSMUSG00000022231 ENSMUST00000227429 Sema5a protein_coding Interval_165904 chr9 54544030 54544373 + 0 NA TTS (ENSMUSG00000037493.6) protein_coding-TTS (ENSMUSG00000037493.6) 5213 ENSMUSG00000046460.15 ENSMUSG00000046460 ENSMUST00000238614 Sh2d7 protein_coding Interval_48067 chr13 95730471 95730883 + 0 NA intron (ENSMUSG00000021676.10, intron 8 of 35) protein_coding-intron (ENSMUSG00000021676.10, intron 8 of 35) -5906 ENSMUSG00000118436.1 ENSMUSG00000118436 ENSMUST00000238548 Gm32880 antisense Interval_170255 chr9 106485005 106485976 + 0 NA TTS (ENSMUSG00000041506.15) protein_coding-TTS (ENSMUSG00000041506.15) 7765 ENSMUSG00000041506.15 ENSMUSG00000041506 ENSMUST00000131618 Rrp9 protein_coding Interval_26139 chr11 54714528 54714805 + 0 NA Intergenic Intergenic -14011 ENSMUSG00000086039.1 ENSMUSG00000086039 ENSMUST00000147847 Gm12227 antisense Interval_142222 chr6 139219032 139219455 + 0 NA Intergenic Intergenic -23012 ENSMUSG00000088903.1 ENSMUSG00000088903 ENSMUST00000158278 Gm25434 scaRNA Interval_118298 chr4 130135729 130135984 + 0 NA exon (ENSMUSG00000028778.15, exon 5 of 9) protein_coding-exon (ENSMUSG00000028778.15, exon 5 of 9) 1772 ENSMUSG00000028778.15 ENSMUSG00000028778 ENSMUST00000164887 Hcrtr1 protein_coding Interval_125546 chr5 69844982 69845248 + 0 NA Intergenic Intergenic -73980 ENSMUSG00000084579.1 ENSMUSG00000084579 ENSMUST00000122630 Gm23661 snRNA Interval_112730 chr4 44452913 44453349 + 0 NA Intergenic Intergenic -40536 ENSMUSG00000077587.1 ENSMUSG00000077587 ENSMUST00000104399 Gm24376 snoRNA Interval_17701 chr10 79636772 79639318 + 0 NA promoter-TSS (ENSMUSG00000020312.12) protein_coding-promoter-TSS (ENSMUSG00000020312.12) 189 ENSMUSG00000111977.1 ENSMUSG00000111977 ENSMUST00000219233 Gm47163 bidirectional_promoter_lncRNA Interval_68817 chr16 87318378 87318569 + 0 NA Intergenic Intergenic -35770 ENSMUSG00000044442.11 ENSMUSG00000044442 ENSMUST00000118115 N6amt1 protein_coding Interval_51226 chr14 25317601 25318932 + 0 NA intron (ENSMUSG00000097601.2, intron 3 of 3) lincRNA-intron (ENSMUSG00000097601.2, intron 3 of 3) 61343 ENSMUSG00000097601.2 ENSMUSG00000097601 ENSMUST00000181582 Gm26660 lincRNA Interval_24604 chr11 35120684 35121985 + 0 NA exon (ENSMUSG00000056427.10, exon 1 of 36) protein_coding-exon (ENSMUSG00000056427.10, exon 1 of 36) -50295 ENSMUSG00000056427.10 ENSMUSG00000056427 ENSMUST00000124438 Slit3 protein_coding Interval_30213 chr11 90665390 90665848 + 0 NA intron (ENSMUSG00000020541.12, intron 5 of 13) protein_coding-intron (ENSMUSG00000020541.12, intron 7 of 15) 21969 ENSMUSG00000020541.12 ENSMUSG00000020541 ENSMUST00000131055 Tom1l1 protein_coding Interval_38026 chr12 74106165 74106446 + 0 NA intron (ENSMUSG00000044912.11, intron 1 of 3) protein_coding-intron (ENSMUSG00000044912.11, intron 1 of 7) -55912 ENSMUSG00000044912.11 ENSMUSG00000044912 ENSMUST00000238790 Syt16 protein_coding Interval_129666 chr5 121618410 121619885 + 0 NA promoter-TSS (ENSMUSG00000042647.13) protein_coding-promoter-TSS (ENSMUSG00000042647.13) -284 ENSMUSG00000042647.13 ENSMUSG00000042647 ENSMUST00000197916 Acad12 protein_coding Interval_148972 chr7 90534524 90535501 + 0 NA intron (ENSMUSG00000052572.19, intron 3 of 27) protein_coding-intron (ENSMUSG00000052572.19, intron 3 of 27) -59017 ENSMUSG00000030614.8 ENSMUSG00000030614 ENSMUST00000123622 Tmem126b protein_coding Interval_12925 chr10 8213427 8214522 + 0 NA intron (ENSMUSG00000047712.8, intron 6 of 6) protein_coding-intron (ENSMUSG00000047712.8, intron 7 of 7) 37843 ENSMUSG00000112109.1 ENSMUSG00000112109 ENSMUST00000219578 Gm30906 lincRNA Interval_167281 chr9 67022890 67024100 + 0 NA TTS (ENSMUSG00000032366.15) protein_coding-TTS (ENSMUSG00000032366.15) 9330 ENSMUSG00000032366.15 ENSMUSG00000032366 ENSMUST00000131279 Tpm1 protein_coding Interval_41814 chr12 119827266 119827508 + 0 NA Intergenic Intergenic 49255 ENSMUSG00000114137.1 ENSMUSG00000114137 ENSMUST00000222158 Gm48685 unprocessed_pseudogene Interval_30866 chr11 96971997 96972729 + 0 NA intron (ENSMUSG00000018678.13, intron 2 of 7) protein_coding-intron (ENSMUSG00000018678.13, intron 2 of 7) 5348 ENSMUSG00000018678.13 ENSMUSG00000018678 ENSMUST00000062652 Sp2 protein_coding Interval_160687 chr8 111595905 111596587 + 0 NA intron (ENSMUSG00000033545.14, intron 1 of 1) protein_coding-intron (ENSMUSG00000033545.14, intron 1 of 3) 32341 ENSMUSG00000031958.16 ENSMUSG00000031958 ENSMUST00000070004 Ldhd protein_coding Interval_30809 chr11 96628063 96628311 + 0 NA intron (ENSMUSG00000057058.16, intron 4 of 7) protein_coding-intron (ENSMUSG00000057058.16, intron 4 of 11) -138615 ENSMUSG00000085242.1 ENSMUSG00000085242 ENSMUST00000124865 Gm11537 antisense Interval_1518 chr1 24645430 24646136 + 0 NA Intergenic Intergenic -29586 ENSMUSG00000101249.1 ENSMUSG00000101249 ENSMUST00000187117 Gm29216 unprocessed_pseudogene Interval_16420 chr10 62809384 62810204 + 0 NA exon (ENSMUSG00000047146.17, exon 11 of 11) protein_coding-exon (ENSMUSG00000047146.17, exon 11 of 11) -26607 ENSMUSG00000112806.1 ENSMUSG00000112806 ENSMUST00000218355 Gm48146 TEC Interval_60272 chr15 71917192 71918403 + 0 NA intron (ENSMUSG00000079022.10, intron 12 of 52) protein_coding-intron (ENSMUSG00000079022.10, intron 23 of 63) 36602 ENSMUSG00000079022.10 ENSMUSG00000079022 ENSMUST00000162081 Col22a1 protein_coding Interval_13440 chr10 18251219 18251852 + 0 NA Intergenic Intergenic 16169 ENSMUSG00000096977.2 ENSMUSG00000096977 ENSMUST00000216248 Gm10827 lincRNA Interval_173566 chrX 99469681 99471326 + 0 NA intron (ENSMUSG00000034403.16, intron 1 of 1) protein_coding-intron (ENSMUSG00000034403.16, intron 1 of 1) 232 ENSMUSG00000034403.16 ENSMUSG00000034403 ENSMUST00000113797 Pja1 protein_coding Interval_133891 chr6 14453448 14453699 + 0 NA Intergenic Intergenic 3577 ENSMUSG00000077334.1 ENSMUSG00000077334 ENSMUST00000104146 Gm23013 snRNA Interval_20398 chr10 117341066 117343570 + 0 NA Intergenic Intergenic 34610 ENSMUSG00000055531.12 ENSMUSG00000055531 ENSMUST00000175924 Cpsf6 protein_coding Interval_65146 chr16 20176795 20177275 + 0 NA promoter-TSS (ENSMUSG00000084838.3) processed_pseudogene-promoter-TSS (ENSMUSG00000084838.3) -23 ENSMUSG00000084838.3 ENSMUSG00000084838 ENSMUST00000117664 Gm10241 processed_pseudogene Interval_145908 chr7 41605883 41606475 + 0 NA intron (ENSMUSG00000091474.2, intron 2 of 2) protein_coding-intron (ENSMUSG00000091474.2, intron 1 of 5) -5805 ENSMUSG00000091474.2 ENSMUSG00000091474 ENSMUST00000206757 2610021A01Rik protein_coding Interval_69721 chr16 95790971 95791211 + 0 NA intron (ENSMUSG00000117232.1, intron 2 of 4) lincRNA-intron (ENSMUSG00000117232.1, intron 2 of 4) 17226 ENSMUSG00000085329.1 ENSMUSG00000085329 ENSMUST00000156615 2810404F17Rik lincRNA Interval_159861 chr8 104416891 104417801 + 0 NA TTS (ENSMUSG00000035770.8) protein_coding-TTS (ENSMUSG00000035770.8) -20914 ENSMUSG00000110689.1 ENSMUSG00000110689 ENSMUST00000211988 Gm45731 TEC Interval_119661 chr4 139064965 139065238 + 0 NA intron (ENSMUSG00000028747.10, intron 2 of 3) protein_coding-intron (ENSMUSG00000028747.10, intron 1 of 2) 10469 ENSMUSG00000028747.10 ENSMUSG00000028747 ENSMUST00000068036 Htr6 protein_coding Interval_102237 chr3 19795524 19795966 + 0 NA Intergenic Intergenic 26872 ENSMUSG00000106182.1 ENSMUSG00000106182 ENSMUST00000197778 Gm7442 processed_pseudogene Interval_18946 chr10 93297270 93298589 + 0 NA intron (ENSMUSG00000008398.16, intron 1 of 3) protein_coding-intron (ENSMUSG00000008398.16, intron 1 of 4) 13040 ENSMUSG00000008398.16 ENSMUSG00000008398 ENSMUST00000133365 Elk3 protein_coding Interval_19705 chr10 108202110 108202295 + 0 NA intron (ENSMUSG00000019907.10, intron 2 of 24) protein_coding-intron (ENSMUSG00000019907.10, intron 2 of 25) -47392 ENSMUSG00000019907.10 ENSMUSG00000019907 ENSMUST00000219559 Ppp1r12a protein_coding Interval_162876 chr9 11106355 11108288 + 0 NA intron (ENSMUSG00000110951.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000110951.1, intron 1 of 1) 4808 ENSMUSG00000110951.1 ENSMUSG00000110951 ENSMUST00000216068 Gm47001 lincRNA Interval_168108 chr9 76659813 76660308 + 0 NA Intergenic Intergenic 1985 ENSMUSG00000098924.1 ENSMUSG00000098924 ENSMUST00000184385 Gm27245 processed_pseudogene Interval_139854 chr6 111448854 111449988 + 0 NA intron (ENSMUSG00000056755.13, intron 9 of 9) protein_coding-intron (ENSMUSG00000056755.13, intron 8 of 10) -46323 ENSMUSG00000056755.13 ENSMUSG00000056755 ENSMUST00000174310 Grm7 protein_coding Interval_101656 chr3 8618057 8619473 + 0 NA Intergenic Intergenic -2261 ENSMUSG00000098047.1 ENSMUSG00000098047 ENSMUST00000182857 Gm18822 processed_pseudogene Interval_143647 chr7 13731293 13731988 + 0 NA Intergenic Intergenic -1865 ENSMUSG00000070811.6 ENSMUSG00000070811 ENSMUST00000086148 Sult2a2 protein_coding Interval_67703 chr16 56075160 56076086 + 0 NA intron (ENSMUSG00000052917.15, intron 1 of 5) protein_coding-intron (ENSMUSG00000052917.15, intron 1 of 6) 148 ENSMUSG00000052917.15 ENSMUSG00000052917 ENSMUST00000202159 Senp7 protein_coding Interval_65823 chr16 29524414 29524852 + 0 NA intron (ENSMUSG00000038094.15, intron 1 of 29) protein_coding-intron (ENSMUSG00000038094.15, intron 2 of 21) 20165 ENSMUSG00000038094.15 ENSMUSG00000038094 ENSMUST00000182694 Atp13a4 protein_coding Interval_169216 chr9 95587770 95588636 + 0 NA Intergenic Intergenic 28546 ENSMUSG00000064225.6 ENSMUSG00000064225 ENSMUST00000079597 Paqr9 protein_coding Interval_50361 chr14 12057617 12058659 + 0 NA intron (ENSMUSG00000021745.14, intron 5 of 29) protein_coding-intron (ENSMUSG00000021745.14, intron 5 of 29) -76930 ENSMUSG00000085883.2 ENSMUSG00000085883 ENSMUST00000151564 Gm3848 antisense Interval_127802 chr5 107921198 107922037 + 0 NA intron (ENSMUSG00000029270.10, intron 1 of 3) protein_coding-intron (ENSMUSG00000029270.10, intron 2 of 4) 14272 ENSMUSG00000077426.1 ENSMUSG00000077426 ENSMUST00000104238 Gm26387 snoRNA Interval_52881 chr14 51771297 51772011 + 0 NA intron (ENSMUSG00000060615.5, intron 1 of 1) protein_coding-intron (ENSMUSG00000060615.5, intron 1 of 1) 1936 ENSMUSG00000060615.5 ENSMUSG00000060615 ENSMUST00000073860 Ang4 protein_coding Interval_153426 chr7 144677334 144677713 + 0 NA intron (ENSMUSG00000031075.19, intron 2 of 25) protein_coding-intron (ENSMUSG00000031075.19, intron 2 of 24) 61043 ENSMUSG00000031075.19 ENSMUSG00000031075 ENSMUST00000131731 Ano1 protein_coding Interval_111667 chr4 25634214 25634479 + 0 NA intron (ENSMUSG00000055373.8, intron 1 of 1) protein_coding-intron (ENSMUSG00000055373.8, intron 2 of 2) -67524 ENSMUSG00000065040.1 ENSMUSG00000065040 ENSMUST00000083106 Gm24977 snRNA Interval_19369 chr10 98252587 98252984 + 0 NA Intergenic Intergenic -48234 ENSMUSG00000112457.1 ENSMUSG00000112457 ENSMUST00000220324 Gm48687 processed_pseudogene Interval_73007 chr17 34101243 34102027 + 0 NA intron (ENSMUSG00000117772.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000117772.1, intron 1 of 2) 1706 ENSMUSG00000117772.1 ENSMUSG00000117772 ENSMUST00000237628 Gm50333 lincRNA Interval_126012 chr5 76830790 76831085 + 0 NA intron (ENSMUSG00000036377.19, intron 4 of 11) protein_coding-intron (ENSMUSG00000036377.19, intron 2 of 3) 64141 ENSMUSG00000055923.16 ENSMUSG00000055923 ENSMUST00000134805 Aasdh protein_coding Interval_65950 chr16 30465572 30466142 + 0 NA Intergenic Intergenic 13269 ENSMUSG00000116960.1 ENSMUSG00000116960 ENSMUST00000231864 Gm49679 processed_pseudogene Interval_66521 chr16 34744925 34745723 + 0 NA exon (ENSMUSG00000022836.11, exon 1 of 6) protein_coding-exon (ENSMUSG00000022836.11, exon 1 of 6) 54614 ENSMUSG00000022833.7 ENSMUSG00000022833 ENSMUST00000232341 Ccdc14 protein_coding Interval_129289 chr5 118703741 118704394 + 0 NA intron (ENSMUSG00000018076.12, intron 4 of 4) protein_coding-intron (ENSMUSG00000018076.12, intron 4 of 30) -3335 ENSMUSG00000107364.1 ENSMUSG00000107364 ENSMUST00000201096 Gm43051 TEC Interval_77743 chr17 94833799 94835351 + 0 NA exon (ENSMUSG00000066057.7, exon 1 of 1) processed_transcript-exon (ENSMUSG00000066057.7, exon 1 of 1) 223 ENSMUSG00000066057.7 ENSMUSG00000066057 ENSMUST00000234446 Gm1976 processed_transcript Interval_93986 chr2 80515370 80515670 + 0 NA intron (ENSMUSG00000027002.13, intron 25 of 31) protein_coding-intron (ENSMUSG00000027002.13, intron 24 of 30) 10160 ENSMUSG00000027002.13 ENSMUSG00000027002 ENSMUST00000134587 Nckap1 protein_coding Interval_1558 chr1 25909927 25910093 + 0 NA Intergenic Intergenic 79353 ENSMUSG00000104516.1 ENSMUSG00000104516 ENSMUST00000194343 Gm9884 TEC Interval_48238 chr13 97364936 97366499 + 0 NA Intergenic Intergenic -10517 ENSMUSG00000114425.1 ENSMUSG00000114425 ENSMUST00000223964 Gm33447 lincRNA Interval_33300 chr11 115781911 115782469 + 0 NA intron (ENSMUSG00000020747.18, intron 1 of 30) protein_coding-intron (ENSMUSG00000020747.18, intron 2 of 31) 1491 ENSMUSG00000020747.18 ENSMUSG00000020747 ENSMUST00000125918 Tmem94 protein_coding Interval_64416 chr16 11232318 11233278 + 0 NA intron (ENSMUSG00000062203.15, intron 6 of 14) protein_coding-intron (ENSMUSG00000062203.15, intron 6 of 14) 21527 ENSMUSG00000062203.15 ENSMUSG00000062203 ENSMUST00000229660 Gspt1 protein_coding Interval_142025 chr6 136594087 136594732 + 0 NA intron (ENSMUSG00000030213.12, intron 10 of 14) protein_coding-intron (ENSMUSG00000030213.12, intron 10 of 14) -26223 ENSMUSG00000107760.1 ENSMUSG00000107760 ENSMUST00000204462 Gm44401 TEC Interval_14055 chr10 26327483 26328130 + 0 NA exon (ENSMUSG00000039089.15, exon 12 of 22) protein_coding-exon (ENSMUSG00000039089.15, exon 12 of 22) -11532 ENSMUSG00000039089.15 ENSMUSG00000039089 ENSMUST00000217699 L3mbtl3 protein_coding Interval_116724 chr4 116869168 116870126 + 0 NA Intergenic Intergenic 5818 ENSMUSG00000082063.1 ENSMUSG00000082063 ENSMUST00000119900 Gm12993 processed_pseudogene Interval_37193 chr12 59363870 59364063 + 0 NA Intergenic Intergenic -8357 ENSMUSG00000111978.1 ENSMUSG00000111978 ENSMUST00000219779 Gm48268 processed_pseudogene Interval_95795 chr2 116417207 116418492 + 0 NA Intergenic Intergenic 110641 ENSMUSG00000081787.1 ENSMUSG00000081787 ENSMUST00000120190 Gm13991 processed_pseudogene Interval_53722 chr14 61172492 61173540 + 0 NA promoter-TSS (ENSMUSG00000048279.19) protein_coding-promoter-TSS (ENSMUSG00000048279.19) -20457 ENSMUSG00000048279.19 ENSMUSG00000048279 ENSMUST00000229692 Sacs protein_coding Interval_111784 chr4 28812691 28815738 + 0 NA TTS (ENSMUSG00000086774.1) antisense-TTS (ENSMUSG00000086774.1) 862 ENSMUSG00000086774.1 ENSMUSG00000086774 ENSMUST00000153669 Gm11915 antisense Interval_64261 chr16 9992231 9995857 + 0 NA exon (ENSMUSG00000059003.12, exon 1 of 1) protein_coding-exon (ENSMUSG00000059003.12, exon 1 of 1) 879 ENSMUSG00000059003.12 ENSMUSG00000059003 ENSMUST00000197242 Grin2a protein_coding Interval_50676 chr14 18035498 18035736 + 0 NA exon (ENSMUSG00000021779.17, exon 10 of 10) protein_coding-exon (ENSMUSG00000021779.17, exon 10 of 10) -13716 ENSMUSG00000114504.1 ENSMUSG00000114504 ENSMUST00000224512 Gm48321 antisense Interval_36043 chr12 33634175 33634391 + 0 NA Intergenic Intergenic -137386 ENSMUSG00000112076.1 ENSMUSG00000112076 ENSMUST00000219348 Gm9368 processed_pseudogene Interval_56359 chr14 118050891 118051832 + 0 NA intron (ENSMUSG00000022129.4, intron 1 of 6) protein_coding-intron (ENSMUSG00000022129.4, intron 1 of 7) 6387 ENSMUSG00000115689.1 ENSMUSG00000115689 ENSMUST00000228171 4930435M08Rik antisense Interval_153821 chr8 8994690 8994962 + 0 NA Intergenic Intergenic -62127 ENSMUSG00000109346.1 ENSMUSG00000109346 ENSMUST00000209045 Gm44515 lincRNA Interval_26921 chr11 61583890 61585603 + 0 NA Intergenic Intergenic -5059 ENSMUSG00000001036.17 ENSMUSG00000001036 ENSMUST00000137525 Epn2 protein_coding Interval_126519 chr5 89501769 89501995 + 0 NA Intergenic Intergenic -1905 ENSMUSG00000106534.1 ENSMUSG00000106534 ENSMUST00000198766 Gm6366 processed_pseudogene Interval_83616 chr18 90592428 90592937 + 0 NA TTS (ENSMUSG00000110277.2) protein_coding-TTS (ENSMUSG00000110277.2) 7210 ENSMUSG00000109923.1 ENSMUSG00000109923 ENSMUST00000210329 Gm20039 processed_pseudogene Interval_5636 chr1 90470067 90472442 + 0 NA Intergenic Intergenic -16753 ENSMUSG00000101997.1 ENSMUSG00000101997 ENSMUST00000187630 Gm28722 lincRNA Interval_167052 chr9 64911121 64911415 + 0 NA promoter-TSS (ENSMUSG00000053641.9) protein_coding-promoter-TSS (ENSMUSG00000053641.9) -1215 ENSMUSG00000053641.9 ENSMUSG00000053641 ENSMUST00000217307 Dennd4a protein_coding Interval_38153 chr12 75997822 75998151 + 0 NA intron (ENSMUSG00000063450.14, intron 60 of 114) protein_coding-intron (ENSMUSG00000063450.14, intron 60 of 115) 88883 ENSMUSG00000092922.1 ENSMUSG00000092922 ENSMUST00000175181 Mir5101 miRNA Interval_77873 chr18 4934452 4934640 + 0 NA intron (ENSMUSG00000024236.18, intron 1 of 35) protein_coding-intron (ENSMUSG00000024236.18, intron 1 of 37) -100620 ENSMUSG00000024236.18 ENSMUSG00000024236 ENSMUST00000129543 Svil protein_coding Interval_154727 chr8 22879496 22880215 + 0 NA intron (ENSMUSG00000031540.14, intron 2 of 17) protein_coding-intron (ENSMUSG00000031540.14, intron 3 of 17) 6266 ENSMUSG00000109652.1 ENSMUSG00000109652 ENSMUST00000210028 Gm45555 TEC Interval_28977 chr11 79679507 79680581 + 0 NA intron (ENSMUSG00000017639.13, intron 1 of 2) protein_coding-intron (ENSMUSG00000017639.13, intron 3 of 14) -4961 ENSMUSG00000086569.1 ENSMUSG00000086569 ENSMUST00000123067 Rab11fip4os2 antisense Interval_145157 chr7 30353250 30353769 + 0 NA promoter-TSS (ENSMUSG00000109049.1) lincRNA-promoter-TSS (ENSMUSG00000109049.1) -188 ENSMUSG00000109049.1 ENSMUSG00000109049 ENSMUST00000208824 4930479H17Rik lincRNA Interval_173858 chrX 106018874 106019625 + 0 NA promoter-TSS (ENSMUSG00000031231.4) protein_coding-promoter-TSS (ENSMUSG00000031231.4) -142 ENSMUSG00000031231.4 ENSMUSG00000031231 ENSMUST00000155377 Cox7b protein_coding Interval_36864 chr12 54801837 54802718 + 0 NA Intergenic Intergenic -6590 ENSMUSG00000005656.9 ENSMUSG00000005656 ENSMUST00000219865 Snx6 protein_coding Interval_102235 chr3 19790242 19790563 + 0 NA Intergenic Intergenic 21529 ENSMUSG00000106182.1 ENSMUSG00000106182 ENSMUST00000197778 Gm7442 processed_pseudogene Interval_159316 chr8 93436243 93437205 + 0 NA intron (ENSMUSG00000110695.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000110695.1, intron 1 of 1) 450 ENSMUSG00000110695.1 ENSMUSG00000110695 ENSMUST00000211900 Gm45766 lincRNA Interval_129288 chr5 118701567 118702411 + 0 NA intron (ENSMUSG00000018076.12, intron 4 of 4) protein_coding-intron (ENSMUSG00000018076.12, intron 4 of 30) -5413 ENSMUSG00000107364.1 ENSMUSG00000107364 ENSMUST00000201096 Gm43051 TEC Interval_174058 chrX 133812790 133813064 + 0 NA Intergenic Intergenic -38053 ENSMUSG00000031250.8 ENSMUSG00000031250 ENSMUST00000033602 Tnmd protein_coding Interval_25502 chr11 49273830 49274259 + 0 NA Intergenic Intergenic -4260 ENSMUSG00000059864.2 ENSMUSG00000059864 ENSMUST00000078932 Olfr1393 protein_coding Interval_96186 chr2 120376840 120377047 + 0 NA intron (ENSMUSG00000033808.16, intron 10 of 18) protein_coding-intron (ENSMUSG00000033808.16, intron 10 of 19) -23822 ENSMUSG00000027291.15 ENSMUSG00000027291 ENSMUST00000126526 Vps39 protein_coding Interval_121518 chr5 3124398 3124639 + 0 NA intron (ENSMUSG00000091483.1, intron 1 of 3) unprocessed_pseudogene-intron (ENSMUSG00000091483.1, intron 1 of 3) 741 ENSMUSG00000091483.1 ENSMUSG00000091483 ENSMUST00000162728 Gm8715 unprocessed_pseudogene Interval_32136 chr11 105470459 105470836 + 0 NA Intergenic Intergenic 36202 ENSMUSG00000086089.1 ENSMUSG00000086089 ENSMUST00000155987 Gm11640 antisense Interval_145834 chr7 39848074 39848915 + 0 NA intron (ENSMUSG00000102085.2, intron 3 of 3) lincRNA-intron (ENSMUSG00000102085.2, intron 3 of 3) -50752 ENSMUSG00000100431.2 ENSMUSG00000100431 ENSMUST00000187626 4930558N11Rik lincRNA Interval_14706 chr10 39202367 39203289 + 0 NA Intergenic Intergenic 4290 ENSMUSG00000111877.1 ENSMUSG00000111877 ENSMUST00000217098 Gm6477 processed_pseudogene Interval_22113 chr11 6414729 6417086 + 0 NA promoter-TSS (ENSMUSG00000071866.12) protein_coding-promoter-TSS (ENSMUSG00000071866.12) -405 ENSMUSG00000071866.12 ENSMUSG00000071866 ENSMUST00000213200 Ppia protein_coding Interval_12396 chr1 192968045 192968536 + 0 NA intron (ENSMUSG00000016200.14, intron 2 of 2) protein_coding-intron (ENSMUSG00000016200.14, intron 4 of 8) 30284 ENSMUSG00000089158.1 ENSMUSG00000089158 ENSMUST00000158533 Gm23583 misc_RNA Interval_78259 chr18 10882333 10883303 + 0 NA Intergenic Intergenic 23138 ENSMUSG00000117593.1 ENSMUSG00000117593 ENSMUST00000235066 Gm18764 processed_pseudogene Interval_6571 chr1 117253252 117253752 + 0 NA Intergenic Intergenic 140030 ENSMUSG00000101154.1 ENSMUSG00000101154 ENSMUST00000189740 Gm17777 processed_pseudogene Interval_149444 chr7 98597472 98597979 + 0 NA intron (ENSMUSG00000035401.9, intron 12 of 15) protein_coding-intron (ENSMUSG00000035401.9, intron 17 of 19) 4608 ENSMUSG00000035401.9 ENSMUSG00000035401 ENSMUST00000206565 Emsy protein_coding Interval_35423 chr12 21518957 21519665 + 0 NA Intergenic Intergenic -23996 ENSMUSG00000109975.1 ENSMUSG00000109975 ENSMUST00000209258 Gm19196 transcribed_unprocessed_pseudogene Interval_162383 chr8 127651504 127652063 + 0 NA Intergenic Intergenic 54077 ENSMUSG00000088580.1 ENSMUSG00000088580 ENSMUST00000157955 Gm22968 rRNA Interval_49439 chr13 111999966 112001918 + 0 NA Intergenic Intergenic -4560 ENSMUSG00000086092.1 ENSMUSG00000086092 ENSMUST00000156109 Gm15323 lincRNA Interval_60316 chr15 72797842 72798072 + 0 NA intron (ENSMUSG00000047921.17, intron 16 of 21) protein_coding-intron (ENSMUSG00000047921.17, intron 16 of 21) 12367 ENSMUSG00000106847.1 ENSMUSG00000106847 ENSMUST00000202826 Peg13 sense_intronic Interval_50156 chr14 8333641 8334689 + 0 NA Intergenic Intergenic -24370 ENSMUSG00000021750.16 ENSMUSG00000021750 ENSMUST00000137133 Fam107a protein_coding Interval_33431 chr11 116504248 116505019 + 0 NA promoter-TSS (ENSMUSG00000081318.1) processed_pseudogene-promoter-TSS (ENSMUSG00000081318.1) 97 ENSMUSG00000081318.1 ENSMUSG00000081318 ENSMUST00000119508 Rpl36-ps1 processed_pseudogene Interval_65883 chr16 30045567 30046283 + 0 NA Intergenic Intergenic -6446 ENSMUSG00000116660.1 ENSMUSG00000116660 ENSMUST00000232465 9030404E10Rik lincRNA Interval_116909 chr4 118160905 118161140 + 0 NA intron (ENSMUSG00000033326.15, intron 1 of 3) protein_coding-intron (ENSMUSG00000033326.15, intron 10 of 18) 635 ENSMUSG00000033326.15 ENSMUSG00000033326 ENSMUST00000164821 Kdm4a protein_coding Interval_66805 chr16 37780479 37781679 + 0 NA intron (ENSMUSG00000022816.11, intron 1 of 2) protein_coding-intron (ENSMUSG00000022816.11, intron 2 of 10) 4024 ENSMUSG00000022816.11 ENSMUSG00000022816 ENSMUST00000123077 Fstl1 protein_coding Interval_174570 chrX 158901283 158901638 + 0 NA Intergenic Intergenic 68025 ENSMUSG00000082026.1 ENSMUSG00000082026 ENSMUST00000118817 Gm5764 processed_pseudogene Interval_78022 chr18 6847694 6848107 + 0 NA Intergenic Intergenic 59132 ENSMUSG00000117461.1 ENSMUSG00000117461 ENSMUST00000234748 Gm50081 sense_overlapping Interval_35924 chr12 31976684 31977190 + 0 NA intron (ENSMUSG00000002997.15, intron 4 of 10) protein_coding-intron (ENSMUSG00000002997.15, intron 4 of 11) -36530 ENSMUSG00000002996.17 ENSMUSG00000002996 ENSMUST00000175666 Hbp1 protein_coding Interval_111089 chr4 11848054 11849118 + 0 NA Intergenic Intergenic -79838 ENSMUSG00000084518.1 ENSMUSG00000084518 ENSMUST00000122569 Gm22477 misc_RNA Interval_13467 chr10 18461064 18461772 + 0 NA intron (ENSMUSG00000039835.16, intron 1 of 3) protein_coding-intron (ENSMUSG00000039835.16, intron 1 of 6) 84646 ENSMUSG00000019853.6 ENSMUSG00000019853 ENSMUST00000214548 Hebp2 protein_coding Interval_74109 chr17 46593241 46593554 + 0 NA intron (ENSMUSG00000023972.10, intron 1 of 19) protein_coding-intron (ENSMUSG00000023972.10, intron 1 of 19) -20447 ENSMUSG00000023972.10 ENSMUSG00000023972 ENSMUST00000044442 Ptk7 protein_coding Interval_91830 chr2 49971067 49971269 + 0 NA Intergenic Intergenic -64288 ENSMUSG00000088825.1 ENSMUSG00000088825 ENSMUST00000158200 Gm25223 misc_RNA Interval_108528 chr3 128001864 128003063 + 0 NA Intergenic Intergenic 31754 ENSMUSG00000106437.1 ENSMUSG00000106437 ENSMUST00000199122 Gm35667 lincRNA Interval_74217 chr17 47517854 47518170 + 0 NA intron (ENSMUSG00000034165.16, intron 1 of 6) protein_coding-intron (ENSMUSG00000034165.16, intron 1 of 6) -15740 ENSMUSG00000023980.7 ENSMUSG00000023980 ENSMUST00000233675 Taf8 protein_coding Interval_10975 chr1 177708577 177709064 + 0 NA Intergenic Intergenic -20994 ENSMUSG00000015962.5 ENSMUSG00000015962 ENSMUST00000016106 1700016C15Rik protein_coding Interval_14374 chr10 31821518 31822354 + 0 NA intron (ENSMUSG00000069670.8, intron 4 of 6) protein_coding-intron (ENSMUSG00000069670.8, intron 4 of 6) -45976 ENSMUSG00000112866.1 ENSMUSG00000112866 ENSMUST00000219333 Gm47704 TEC Interval_103540 chr3 48124136 48124741 + 0 NA Intergenic Intergenic 46097 ENSMUSG00000104110.1 ENSMUSG00000104110 ENSMUST00000192186 Gm37295 TEC Interval_114500 chr4 81328210 81328418 + 0 NA intron (ENSMUSG00000028402.18, intron 23 of 46) protein_coding-intron (ENSMUSG00000028402.18, intron 23 of 46) 10090 ENSMUSG00000077607.1 ENSMUSG00000077607 ENSMUST00000104419 Gm25803 snoRNA Interval_46659 chr13 68294372 68294598 + 0 NA Intergenic Intergenic 62340 ENSMUSG00000113050.1 ENSMUSG00000113050 ENSMUST00000221830 Gm8016 lincRNA Interval_75726 chr17 70891978 70893771 + 0 NA promoter-TSS (ENSMUSG00000117121.1) TEC-promoter-TSS (ENSMUSG00000117121.1) 35 ENSMUSG00000117121.1 ENSMUSG00000117121 ENSMUST00000233300 Gm49902 TEC Interval_97074 chr2 131040333 131041982 + 0 NA promoter-TSS (ENSMUSG00000098686.1) miRNA-promoter-TSS (ENSMUSG00000098686.1) 300 ENSMUSG00000027316.15 ENSMUSG00000027316 ENSMUST00000110235 Gfra4 protein_coding Interval_158419 chr8 83618343 83619112 + 0 NA Intergenic Intergenic 10174 ENSMUSG00000005483.10 ENSMUSG00000005483 ENSMUST00000212300 Dnajb1 protein_coding Interval_54665 chr14 73112281 73112751 + 0 NA Intergenic Intergenic -30347 ENSMUSG00000022106.14 ENSMUSG00000022106 ENSMUST00000170278 Rcbtb2 protein_coding Interval_23478 chr11 22840234 22840609 + 0 NA intron (ENSMUSG00000092455.1, intron 1 of 1) protein_coding-intron (ENSMUSG00000051650.11, intron 1 of 1) 1122 ENSMUSG00000092455.1 ENSMUSG00000092455 ENSMUST00000174690 Gm20456 processed_transcript Interval_147339 chr7 65955181 65955498 + 0 NA intron (ENSMUSG00000030513.14, intron 1 of 2) protein_coding-intron (ENSMUSG00000030513.14, intron 7 of 21) 2327 ENSMUSG00000030513.14 ENSMUSG00000030513 ENSMUST00000177272 Pcsk6 protein_coding Interval_109246 chr3 138272744 138273866 + 0 NA intron (ENSMUSG00000074207.10, intron 2 of 5) protein_coding-intron (ENSMUSG00000074207.10, intron 2 of 5) 12314 ENSMUSG00000074207.10 ENSMUSG00000074207 ENSMUST00000159159 Adh1 protein_coding Interval_113411 chr4 54695618 54695910 + 0 NA Intergenic Intergenic -14860 ENSMUSG00000084710.1 ENSMUSG00000084710 ENSMUST00000122761 Gm24628 misc_RNA Interval_25724 chr11 51135091 51135467 + 0 NA Intergenic Intergenic -7253 ENSMUSG00000083312.1 ENSMUSG00000083312 ENSMUST00000120114 Olfr1374-ps1 unprocessed_pseudogene Interval_153461 chr7 144941175 144943696 + 0 NA Intergenic Intergenic -2510 ENSMUSG00000070348.5 ENSMUSG00000070348 ENSMUST00000135985 Ccnd1 protein_coding Interval_55840 chr14 101379108 101380033 + 0 NA Intergenic Intergenic 36026 ENSMUSG00000115538.1 ENSMUSG00000115538 ENSMUST00000227762 Hspd1-ps5 processed_pseudogene Interval_60778 chr15 76697798 76698610 + 0 NA promoter-TSS (ENSMUSG00000022546.5) protein_coding-promoter-TSS (ENSMUSG00000022546.5) 2488 ENSMUSG00000022546.5 ENSMUSG00000022546 ENSMUST00000229140 Gpt protein_coding Interval_155760 chr8 36992846 36994238 + 0 NA promoter-TSS (ENSMUSG00000074384.4) protein_coding-promoter-TSS (ENSMUSG00000074384.4) -62 ENSMUSG00000074384.4 ENSMUSG00000074384 ENSMUST00000098825 AI429214 protein_coding Interval_79611 chr18 33997952 33998922 + 0 NA intron (ENSMUSG00000024376.7, intron 2 of 2) protein_coding-intron (ENSMUSG00000024376.7, intron 2 of 23) 8529 ENSMUSG00000024376.7 ENSMUSG00000024376 ENSMUST00000237971 Epb41l4a protein_coding Interval_89913 chr2 26423293 26423512 + 0 NA intron (ENSMUSG00000026924.17, intron 12 of 22) protein_coding-intron (ENSMUSG00000026924.17, intron 19 of 29) 6110 ENSMUSG00000026924.17 ENSMUSG00000026924 ENSMUST00000155252 Sec16a protein_coding Interval_95610 chr2 112778370 112779355 + 0 NA intron (ENSMUSG00000057378.15, intron 45 of 103) protein_coding-intron (ENSMUSG00000057378.15, intron 45 of 102) -122314 ENSMUSG00000057378.15 ENSMUSG00000057378 ENSMUST00000208135 Ryr3 protein_coding Interval_115804 chr4 104695165 104695425 + 0 NA intron (ENSMUSG00000028519.16, intron 9 of 14) protein_coding-intron (ENSMUSG00000028519.16, intron 9 of 14) 89999 ENSMUSG00000028519.16 ENSMUSG00000028519 ENSMUST00000149672 Dab1 protein_coding Interval_60460 chr15 73950440 73952228 + 0 NA Intergenic Intergenic 49579 ENSMUSG00000116256.1 ENSMUSG00000116256 ENSMUST00000230277 Gm32405 lincRNA Interval_73840 chr17 44455336 44456216 + 0 NA Intergenic Intergenic -87873 ENSMUSG00000117106.1 ENSMUSG00000117106 ENSMUST00000233110 Gm49872 lincRNA Interval_6138 chr1 97916361 97917164 + 0 NA intron (ENSMUSG00000026335.16, intron 6 of 23) protein_coding-intron (ENSMUSG00000026335.16, intron 7 of 25) -19638 ENSMUSG00000089169.1 ENSMUSG00000089169 ENSMUST00000158544 Gm25413 misc_RNA Interval_149282 chr7 96915680 96916278 + 0 NA intron (ENSMUSG00000085560.2, intron 2 of 3) processed_transcript-intron (ENSMUSG00000085560.2, intron 2 of 3) 4123 ENSMUSG00000087980.1 ENSMUSG00000087980 ENSMUST00000157355 Gm22226 snRNA Interval_47281 chr13 80619809 80620239 + 0 NA Intergenic Intergenic 127015 ENSMUSG00000114528.1 ENSMUSG00000114528 ENSMUST00000223876 Gm46388 processed_pseudogene Interval_54901 chr14 76121941 76122473 + 0 NA intron (ENSMUSG00000022009.1, intron 5 of 9) protein_coding-intron (ENSMUSG00000022009.1, intron 5 of 9) 11316 ENSMUSG00000022009.1 ENSMUSG00000022009 ENSMUST00000022586 Nufip1 protein_coding Interval_69469 chr16 93759463 93760565 + 0 NA intron (ENSMUSG00000022946.10, intron 11 of 35) protein_coding-intron (ENSMUSG00000022946.10, intron 12 of 36) -32775 ENSMUSG00000022946.10 ENSMUSG00000022946 ENSMUST00000228423 Dop1b protein_coding Interval_57129 chr15 6769896 6770166 + 0 NA intron (ENSMUSG00000050310.9, intron 14 of 24) protein_coding-intron (ENSMUSG00000050310.9, intron 14 of 37) 61652 ENSMUSG00000050310.9 ENSMUSG00000050310 ENSMUST00000061656 Rictor protein_coding Interval_89161 chr2 17722693 17722894 + 0 NA intron (ENSMUSG00000053702.16, intron 2 of 6) protein_coding-intron (ENSMUSG00000053702.16, intron 2 of 6) 75191 ENSMUSG00000081851.1 ENSMUSG00000081851 ENSMUST00000120245 Gm13323 processed_pseudogene Interval_37972 chr12 73516673 73518015 + 0 NA Intergenic Intergenic -8674 ENSMUSG00000113099.1 ENSMUSG00000113099 ENSMUST00000222678 Gm34016 lincRNA Interval_98398 chr2 152069074 152069476 + 0 NA Intergenic Intergenic 7533 ENSMUSG00000085946.1 ENSMUSG00000085946 ENSMUST00000147463 AA387200 antisense Interval_169135 chr9 93763697 93763934 + 0 NA Intergenic Intergenic 194241 ENSMUSG00000111630.1 ENSMUSG00000111630 ENSMUST00000216733 Gm47165 processed_pseudogene Interval_53312 chr14 55962866 55964644 + 0 NA intron (ENSMUSG00000068289.6, intron 1 of 3) protein_coding-intron (ENSMUSG00000068289.6, intron 1 of 3) 3110 ENSMUSG00000115179.1 ENSMUSG00000115179 ENSMUST00000227962 Gm48927 processed_pseudogene Interval_152901 chr7 139590398 139591997 + 0 NA Intergenic Intergenic -8407 ENSMUSG00000041309.17 ENSMUSG00000041309 ENSMUST00000106095 Nkx6-2 protein_coding Interval_6334 chr1 105999695 105999919 + 0 NA intron (ENSMUSG00000038866.15, intron 1 of 12) protein_coding-intron (ENSMUSG00000038866.15, intron 1 of 13) -4330 ENSMUSG00000038866.15 ENSMUSG00000038866 ENSMUST00000131830 Zcchc2 protein_coding Interval_43875 chr13 37784050 37784502 + 0 NA intron (ENSMUSG00000039087.17, intron 1 of 3) protein_coding-intron (ENSMUSG00000039087.17, intron 1 of 3) 15514 ENSMUSG00000114370.1 ENSMUSG00000114370 ENSMUST00000224624 Gm46411 antisense Interval_3210 chr1 54882774 54882991 + 0 NA intron (ENSMUSG00000052331.14, intron 1 of 7) protein_coding-intron (ENSMUSG00000052331.14, intron 1 of 27) 33712 ENSMUSG00000102642.1 ENSMUSG00000102642 ENSMUST00000193052 A130048G24Rik TEC Interval_95373 chr2 107123796 107124169 + 0 NA promoter-TSS (ENSMUSG00000083181.1) unprocessed_pseudogene-promoter-TSS (ENSMUSG00000083181.1) -22 ENSMUSG00000083181.1 ENSMUSG00000083181 ENSMUST00000120945 Gm13903 unprocessed_pseudogene Interval_35820 chr12 30545946 30546383 + 0 NA Intergenic Intergenic 11956 ENSMUSG00000092653.2 ENSMUSG00000092653 ENSMUST00000174912 Gm25243 miRNA Interval_41974 chr13 5824439 5824804 + 0 NA Intergenic Intergenic -2763 ENSMUSG00000080562.2 ENSMUSG00000080562 ENSMUST00000116912 Gm26043 miRNA Interval_164177 chr9 32215840 32216226 + 0 NA intron (ENSMUSG00000041444.14, intron 2 of 13) protein_coding-intron (ENSMUSG00000041444.14, intron 10 of 21) -8559 ENSMUSG00000041444.14 ENSMUSG00000041444 ENSMUST00000174730 Arhgap32 protein_coding Interval_52630 chr14 48130856 48132327 + 0 NA intron (ENSMUSG00000021846.9, intron 1 of 2) protein_coding-intron (ENSMUSG00000021846.9, intron 1 of 5) -1428 ENSMUSG00000115790.1 ENSMUSG00000115790 ENSMUST00000228011 9530086P17Rik TEC Interval_44005 chr13 39161901 39162120 + 0 NA Intergenic Intergenic 201391 ENSMUSG00000096932.2 ENSMUSG00000096932 ENSMUST00000181376 5033403F01Rik antisense Interval_155171 chr8 27191007 27192668 + 0 NA Intergenic Intergenic -17196 ENSMUSG00000031488.14 ENSMUSG00000031488 ENSMUST00000211646 Rab11fip1 protein_coding Interval_48532 chr13 99880801 99882129 + 0 NA Intergenic Intergenic 19626 ENSMUSG00000021647.7 ENSMUSG00000021647 ENSMUST00000224142 Cartpt protein_coding Interval_15361 chr10 45082455 45083140 + 0 NA intron (ENSMUSG00000019849.11, intron 2 of 14) protein_coding-intron (ENSMUSG00000019849.11, intron 2 of 14) 12911 ENSMUSG00000077082.1 ENSMUSG00000077082 ENSMUST00000103894 Gm23766 miRNA Interval_65942 chr16 30407151 30407896 + 0 NA Intergenic Intergenic -45065 ENSMUSG00000116960.1 ENSMUSG00000116960 ENSMUST00000231864 Gm49679 processed_pseudogene Interval_150626 chr7 112901822 112902081 + 0 NA exon (ENSMUSG00000055320.18, exon 14 of 14) protein_coding-exon (ENSMUSG00000055320.18, exon 14 of 14) -52011 ENSMUSG00000098132.1 ENSMUSG00000098132 ENSMUST00000182858 Rassf10 protein_coding Interval_82713 chr18 76136767 76137112 + 0 NA exon (ENSMUSG00000044646.15, exon 4 of 5) protein_coding-exon (ENSMUSG00000044646.15, exon 4 of 5) -33613 ENSMUSG00000098276.1 ENSMUSG00000098276 ENSMUST00000184549 Mir6358 miRNA Interval_159518 chr8 95203686 95204512 + 0 NA Intergenic Intergenic 65789 ENSMUSG00000110475.1 ENSMUSG00000110475 ENSMUST00000212925 Gm31036 antisense Interval_1471 chr1 23884428 23885701 + 0 NA intron (ENSMUSG00000026155.13, intron 2 of 10) protein_coding-intron (ENSMUSG00000026155.13, intron 2 of 9) 24672 ENSMUSG00000026155.13 ENSMUSG00000026155 ENSMUST00000133398 Smap1 protein_coding Interval_80405 chr18 41903238 41904735 + 0 NA intron (ENSMUSG00000056671.7, intron 5 of 6) protein_coding-intron (ENSMUSG00000056671.7, intron 5 of 5) -8673 ENSMUSG00000118266.1 ENSMUSG00000118266 ENSMUST00000235276 Gm18371 processed_pseudogene Interval_4395 chr1 73824549 73824850 + 0 NA intron (ENSMUSG00000101344.1, intron 3 of 7) lincRNA-intron (ENSMUSG00000101344.1, intron 3 of 7) 17218 ENSMUSG00000101344.1 ENSMUSG00000101344 ENSMUST00000188600 Gm29183 lincRNA Interval_171492 chr9 118776652 118777025 + 0 NA intron (ENSMUSG00000039115.13, intron 4 of 5) protein_coding-intron (ENSMUSG00000039115.13, intron 16 of 27) 61117 ENSMUSG00000066270.3 ENSMUSG00000066270 ENSMUST00000139408 Gm10157 processed_pseudogene Interval_62237 chr15 89088768 89089961 + 0 NA exon (ENSMUSG00000035757.16, exon 1 of 9) protein_coding-exon (ENSMUSG00000035757.16, exon 1 of 9) 280 ENSMUSG00000035757.16 ENSMUSG00000035757 ENSMUST00000082439 Selenoo protein_coding Interval_163324 chr9 20868420 20869630 + 0 NA promoter-TSS (ENSMUSG00000038884.14) protein_coding-promoter-TSS (ENSMUSG00000038884.14) -252 ENSMUSG00000038884.14 ENSMUSG00000038884 ENSMUST00000176990 Shfl protein_coding Interval_35677 chr12 27389158 27391079 + 0 NA Intergenic Intergenic -47544 ENSMUSG00000063632.6 ENSMUSG00000063632 ENSMUST00000079063 Sox11 protein_coding Interval_59686 chr15 57959852 57960054 + 0 NA TTS (ENSMUSG00000022364.14) protein_coding-TTS (ENSMUSG00000022364.14) -42193 ENSMUSG00000051225.9 ENSMUSG00000051225 ENSMUST00000161231 Fam83a protein_coding Interval_161129 chr8 117661735 117661964 + 0 NA exon (ENSMUSG00000034308.13, exon 3 of 3) protein_coding-exon (ENSMUSG00000034308.13, exon 3 of 3) 11840 ENSMUSG00000034308.13 ENSMUSG00000034308 ENSMUST00000174450 Sdr42e1 protein_coding Interval_75383 chr17 66276871 66278713 + 0 NA Intergenic Intergenic -41423 ENSMUSG00000117220.1 ENSMUSG00000117220 ENSMUST00000233452 Gm49932 lincRNA Interval_151815 chr7 126825190 126825857 + 0 NA intron (ENSMUSG00000058966.13, intron 1 of 3) protein_coding-intron (ENSMUSG00000058966.13, intron 2 of 4) 870 ENSMUSG00000058966.13 ENSMUSG00000058966 ENSMUST00000207020 Fam57b protein_coding Interval_134799 chr6 31628451 31631126 + 0 NA intron (ENSMUSG00000086804.8, intron 2 of 2) lincRNA-intron (ENSMUSG00000086804.8, intron 1 of 2) 36254 ENSMUSG00000084973.2 ENSMUSG00000084973 ENSMUST00000130777 Gm13848 lincRNA Interval_26454 chr11 57955460 57955813 + 0 NA Intergenic Intergenic -6551 ENSMUSG00000083657.1 ENSMUSG00000083657 ENSMUST00000117266 Gm12245 processed_pseudogene Interval_58403 chr15 34183163 34183380 + 0 NA Intergenic Intergenic -43895 ENSMUSG00000089072.1 ENSMUSG00000089072 ENSMUST00000158447 Gm24500 snoRNA Interval_73492 chr17 38004760 38005541 + 0 NA Intergenic Intergenic -4497 ENSMUSG00000092390.1 ENSMUSG00000092390 ENSMUST00000173035 Gm20541 unprocessed_pseudogene Interval_54016 chr14 64481867 64482104 + 0 NA Intergenic Intergenic 55553 ENSMUSG00000114680.1 ENSMUSG00000114680 ENSMUST00000223738 Gm47202 lincRNA Interval_170481 chr9 108245121 108246264 + 0 NA intron (ENSMUSG00000039952.15, intron 2 of 3) protein_coding-intron (ENSMUSG00000039952.15, intron 2 of 3) 18059 ENSMUSG00000039952.15 ENSMUSG00000039952 ENSMUST00000193701 Dag1 protein_coding Interval_125366 chr5 66476786 66477360 + 0 NA intron (ENSMUSG00000029207.16, intron 2 of 3) protein_coding-intron (ENSMUSG00000029207.16, intron 3 of 17) 15099 ENSMUSG00000029207.16 ENSMUSG00000029207 ENSMUST00000159847 Apbb2 protein_coding Interval_134239 chr6 23456544 23457506 + 0 NA intron (ENSMUSG00000017978.18, intron 9 of 29) protein_coding-intron (ENSMUSG00000017978.18, intron 8 of 29) -62721 ENSMUSG00000098877.1 ENSMUSG00000098877 ENSMUST00000185172 Gm27959 rRNA Interval_134462 chr6 28915232 28915528 + 0 NA intron (ENSMUSG00000001424.14, intron 16 of 16) protein_coding-intron (ENSMUSG00000001424.14, intron 16 of 16) -66254 ENSMUSG00000092090.2 ENSMUSG00000092090 ENSMUST00000164104 Gm3294 lincRNA Interval_172095 chrX 7422520 7423237 + 0 NA intron (ENSMUSG00000063018.6, intron 3 of 3) processed_transcript-intron (ENSMUSG00000063018.6, intron 1 of 1) -1793 ENSMUSG00000063018.6 ENSMUSG00000063018 ENSMUST00000150671 2010204K13Rik processed_transcript Interval_82914 chr18 79026264 79026913 + 0 NA intron (ENSMUSG00000024548.11, intron 2 of 5) protein_coding-intron (ENSMUSG00000024548.11, intron 2 of 5) 82803 ENSMUSG00000024548.11 ENSMUSG00000024548 ENSMUST00000025430 Setbp1 protein_coding Interval_95494 chr2 110204701 110205394 + 0 NA intron (ENSMUSG00000085444.1, intron 1 of 1) antisense-intron (ENSMUSG00000085444.1, intron 1 of 1) 5118 ENSMUSG00000082512.1 ENSMUSG00000082512 ENSMUST00000121000 Gm13937 processed_pseudogene Interval_140502 chr6 118896832 118897264 + 0 NA intron (ENSMUSG00000051331.16, intron 3 of 47) protein_coding-intron (ENSMUSG00000051331.16, intron 3 of 46) 62148 ENSMUSG00000089115.1 ENSMUSG00000089115 ENSMUST00000158490 Gm25905 snRNA Interval_69411 chr16 93010760 93011066 + 0 NA Intergenic Intergenic -61842 ENSMUSG00000098983.1 ENSMUSG00000098983 ENSMUST00000184529 Gm28003 miRNA Interval_549 chr1 7201568 7202103 + 0 NA Intergenic Intergenic -11916 ENSMUSG00000103709.1 ENSMUSG00000103709 ENSMUST00000195269 Nras-ps2 processed_pseudogene Interval_17412 chr10 76442224 76443300 + 0 NA promoter-TSS (ENSMUSG00000001151.10) protein_coding-promoter-TSS (ENSMUSG00000001151.10) -2318 ENSMUSG00000117965.1 ENSMUSG00000117965 ENSMUST00000235907 AC141477.1 protein_coding Interval_3238 chr1 55065555 55066460 + 0 NA promoter-TSS (ENSMUSG00000101122.1) processed_pseudogene-promoter-TSS (ENSMUSG00000101122.1) -257 ENSMUSG00000101122.1 ENSMUSG00000101122 ENSMUST00000190239 Gm17971 processed_pseudogene Interval_61784 chr15 84120652 84121101 + 0 NA intron (ENSMUSG00000018868.4, intron 2 of 8) protein_coding-intron (ENSMUSG00000018868.4, intron 2 of 9) 2299 ENSMUSG00000018868.4 ENSMUSG00000018868 ENSMUST00000019012 Pnpla5 protein_coding Interval_120116 chr4 141936085 141936859 + 0 NA intron (ENSMUSG00000051435.11, intron 4 of 6) protein_coding-intron (ENSMUSG00000051435.11, intron 15 of 31) -14046 ENSMUSG00000051435.11 ENSMUSG00000051435 ENSMUST00000125293 Fhad1 protein_coding Interval_62360 chr15 91048920 91050450 + 0 NA exon (ENSMUSG00000022629.17, exon 1 of 36) protein_coding-exon (ENSMUSG00000022629.17, exon 1 of 36) -24477 ENSMUSG00000115952.1 ENSMUSG00000115952 ENSMUST00000230093 Gm18814 processed_pseudogene Interval_49631 chr13 113669338 113671613 + 0 NA Intergenic Intergenic -1843 ENSMUSG00000114417.1 ENSMUSG00000114417 ENSMUST00000223766 Gm34586 lincRNA Interval_20483 chr10 117865927 117867185 + 0 NA intron (ENSMUSG00000112711.1, intron 1 of 3) lincRNA-intron (ENSMUSG00000112711.1, intron 1 of 3) 159 ENSMUSG00000112711.1 ENSMUSG00000112711 ENSMUST00000217849 Gm32552 lincRNA Interval_37055 chr12 57169359 57170482 + 0 NA intron (ENSMUSG00000035472.14, intron 1 of 9) protein_coding-intron (ENSMUSG00000035472.14, intron 1 of 9) -9277 ENSMUSG00000035472.14 ENSMUSG00000035472 ENSMUST00000160892 Slc25a21 protein_coding Interval_97864 chr2 144550268 144551251 + 0 NA promoter-TSS (ENSMUSG00000027428.9) protein_coding-promoter-TSS (ENSMUSG00000027428.9) 31 ENSMUSG00000027428.9 ENSMUSG00000027428 ENSMUST00000140340 Rbbp9 protein_coding Interval_115278 chr4 95153472 95154578 + 0 NA intron (ENSMUSG00000087366.7, intron 4 of 4) antisense-intron (ENSMUSG00000087366.7, intron 4 of 4) 2285 ENSMUSG00000100189.1 ENSMUSG00000100189 ENSMUST00000191391 Gm28096 sense_intronic Interval_42527 chr13 14590389 14590557 + 0 NA Intergenic Intergenic -4134 ENSMUSG00000113627.1 ENSMUSG00000113627 ENSMUST00000221878 Gm32526 processed_pseudogene Interval_12236 chr1 191041923 191042221 + 0 NA intron (ENSMUSG00000057072.11, intron 2 of 2) protein_coding-intron (ENSMUSG00000057072.11, intron 2 of 2) 5433 ENSMUSG00000057072.11 ENSMUSG00000057072 ENSMUST00000077889 Spata45 protein_coding Interval_148069 chr7 79020712 79021180 + 0 NA exon (ENSMUSG00000097441.1, exon 3 of 3) antisense-exon (ENSMUSG00000097441.1, exon 3 of 3) 32377 ENSMUSG00000097441.1 ENSMUSG00000097441 ENSMUST00000180546 Gm26633 antisense Interval_134037 chr6 17911759 17912747 + 0 NA intron (ENSMUSG00000029534.17, intron 12 of 15) protein_coding-intron (ENSMUSG00000029534.17, intron 11 of 14) -2743 ENSMUSG00000106858.1 ENSMUSG00000106858 ENSMUST00000202926 Gm43844 TEC Interval_23584 chr11 23571279 23571825 + 0 NA intron (ENSMUSG00000042208.15, intron 21 of 22) protein_coding-intron (ENSMUSG00000042208.15, intron 21 of 22) -12710 ENSMUSG00000085415.1 ENSMUSG00000085415 ENSMUST00000125204 Selenok-ps1 processed_transcript Interval_168101 chr9 76451181 76451646 + 0 NA Intergenic Intergenic 115703 ENSMUSG00000032358.12 ENSMUSG00000032358 ENSMUST00000098546 Fam83b protein_coding Interval_99519 chr2 162930808 162932901 + 0 NA intron (ENSMUSG00000016921.14, intron 1 of 4) protein_coding-intron (ENSMUSG00000016921.14, intron 1 of 6) 326 ENSMUSG00000016921.14 ENSMUSG00000016921 ENSMUST00000126163 Srsf6 protein_coding Interval_35200 chr12 18054680 18054965 + 0 NA intron (ENSMUSG00000113642.1, intron 1 of 1) transcribed_unprocessed_pseudogene-intron (ENSMUSG00000113642.1, intron 1 of 1) -7145 ENSMUSG00000113642.1 ENSMUSG00000113642 ENSMUST00000222523 Gm49329 transcribed_unprocessed_pseudogene Interval_70120 chr17 5467113 5467317 + 0 NA Intergenic Intergenic 15749 ENSMUSG00000116691.1 ENSMUSG00000116691 ENSMUST00000231799 Gm8363 processed_pseudogene Interval_121960 chr5 12589284 12590101 + 0 NA TTS (ENSMUSG00000040254.11) protein_coding-TTS (ENSMUSG00000040254.11) 35060 ENSMUSG00000104632.1 ENSMUSG00000104632 ENSMUST00000196982 Gm42909 TEC Interval_165443 chr9 48082115 48082722 + 0 NA Intergenic Intergenic 32902 ENSMUSG00000111117.1 ENSMUSG00000111117 ENSMUST00000217082 A730065G17Rik lincRNA Interval_1470 chr1 23875947 23876409 + 0 NA intron (ENSMUSG00000026155.13, intron 4 of 9) protein_coding-intron (ENSMUSG00000026155.13, intron 4 of 9) 33558 ENSMUSG00000026155.13 ENSMUSG00000026155 ENSMUST00000133398 Smap1 protein_coding Interval_37476 chr12 69220183 69220389 + 0 NA intron (ENSMUSG00000020974.6, intron 5 of 18) protein_coding-intron (ENSMUSG00000020974.6, intron 5 of 18) -7640 ENSMUSG00000113190.1 ENSMUSG00000113190 ENSMUST00000220745 Gm47545 antisense Interval_159106 chr8 90707954 90709011 + 0 NA TTS (ENSMUSG00000109870.1) lincRNA-TTS (ENSMUSG00000109870.1) -20419 ENSMUSG00000109726.1 ENSMUSG00000109726 ENSMUST00000211507 Gm45638 TEC Interval_116196 chr4 108619043 108620773 + 0 NA promoter-TSS (ENSMUSG00000028582.14) protein_coding-promoter-TSS (ENSMUSG00000028582.14) -59 ENSMUSG00000084968.1 ENSMUSG00000084968 ENSMUST00000126668 Gm12743 processed_transcript Interval_55526 chr14 90684719 90684933 + 0 NA intron (ENSMUSG00000115292.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000115292.1, intron 1 of 2) 6619 ENSMUSG00000115292.1 ENSMUSG00000115292 ENSMUST00000226296 Gm33246 lincRNA Interval_12774 chr10 5219629 5219972 + 0 NA intron (ENSMUSG00000096054.3, intron 80 of 145) protein_coding-intron (ENSMUSG00000096054.3, intron 80 of 145) -34274 ENSMUSG00000096054.3 ENSMUSG00000096054 ENSMUST00000214945 Syne1 protein_coding Interval_23692 chr11 24629683 24631010 + 0 NA intron (ENSMUSG00000087085.1, intron 2 of 3) lincRNA-intron (ENSMUSG00000087085.1, intron 2 of 3) 49365 ENSMUSG00000080631.1 ENSMUSG00000080631 ENSMUST00000116981 Gm25507 miRNA Interval_155689 chr8 36160934 36161466 + 0 NA TTS (ENSMUSG00000109704.1) lincRNA-TTS (ENSMUSG00000109704.1) 1721 ENSMUSG00000109704.1 ENSMUSG00000109704 ENSMUST00000211253 Gm38414 lincRNA Interval_22824 chr11 16375517 16375712 + 0 NA intron (ENSMUSG00000048834.16, intron 5 of 6) protein_coding-intron (ENSMUSG00000048834.16, intron 5 of 6) -63640 ENSMUSG00000083925.1 ENSMUSG00000083925 ENSMUST00000118857 Gm12012 processed_pseudogene Interval_126748 chr5 92497975 92498784 + 0 NA intron (ENSMUSG00000029426.8, intron 1 of 11) protein_coding-intron (ENSMUSG00000029426.8, intron 1 of 11) 8454 ENSMUSG00000029426.8 ENSMUSG00000029426 ENSMUST00000201253 Scarb2 protein_coding Interval_17517 chr10 77450551 77450862 + 0 NA Intergenic Intergenic -7211 ENSMUSG00000112818.1 ENSMUSG00000112818 ENSMUST00000218522 Gm35920 lincRNA Interval_31494 chr11 100998937 101000202 + 0 NA Intergenic Intergenic -9918 ENSMUSG00000019302.16 ENSMUSG00000019302 ENSMUST00000127810 Atp6v0a1 protein_coding Interval_75817 chr17 71615635 71616997 + 0 NA promoter-TSS (ENSMUSG00000117637.1) antisense-promoter-TSS (ENSMUSG00000117637.1) -333 ENSMUSG00000117637.1 ENSMUSG00000117637 ENSMUST00000234677 Gm30091 antisense Interval_158525 chr8 84245137 84245353 + 0 NA TTS (ENSMUSG00000019362.8) protein_coding-TTS (ENSMUSG00000019362.8) 4474 ENSMUSG00000019362.8 ENSMUSG00000019362 ENSMUST00000019506 D8Ertd738e protein_coding Interval_41394 chr12 113265180 113265972 + 0 NA Intergenic Intergenic -5340 ENSMUSG00000095079.6 ENSMUSG00000095079 ENSMUST00000178282 Igha IG_C_gene Interval_82541 chr18 75025201 75026115 + 0 NA intron (ENSMUSG00000035765.10, intron 1 of 8) protein_coding-intron (ENSMUSG00000035765.10, intron 1 of 16) 1802 ENSMUSG00000098305.1 ENSMUSG00000098305 ENSMUST00000185185 Gm27781 rRNA Interval_116876 chr4 117908058 117908262 + 0 NA intron (ENSMUSG00000033365.14, intron 2 of 19) protein_coding-intron (ENSMUSG00000033365.14, intron 2 of 19) -13046 ENSMUSG00000033365.14 ENSMUSG00000033365 ENSMUST00000153918 Ipo13 protein_coding Interval_32862 chr11 112412176 112412652 + 0 NA Intergenic Intergenic 298926 ENSMUSG00000041674.16 ENSMUSG00000041674 ENSMUST00000148724 BC006965 processed_transcript Interval_30562 chr11 95126401 95127105 + 0 NA Intergenic Intergenic 6634 ENSMUSG00000001510.8 ENSMUSG00000001510 ENSMUST00000092768 Dlx3 protein_coding Interval_122670 chr5 24565639 24566091 + 0 NA exon (ENSMUSG00000028953.10, exon 14 of 14) protein_coding-exon (ENSMUSG00000028953.10, exon 14 of 14) -10455 ENSMUSG00000038199.12 ENSMUSG00000038199 ENSMUST00000198709 Iqca1l protein_coding Interval_154595 chr8 21912002 21912984 + 0 NA intron (ENSMUSG00000110616.1, intron 1 of 3) antisense-intron (ENSMUSG00000110616.1, intron 1 of 3) 5829 ENSMUSG00000110616.1 ENSMUSG00000110616 ENSMUST00000212313 Gm36879 antisense Interval_108501 chr3 127750289 127750613 + 0 NA intron (ENSMUSG00000028028.11, intron 1 of 2) protein_coding-intron (ENSMUSG00000028028.11, intron 1 of 13) 18857 ENSMUSG00000088537.1 ENSMUSG00000088537 ENSMUST00000157912 Gm23279 rRNA Interval_72524 chr17 30445953 30446543 + 0 NA promoter-TSS (ENSMUSG00000062202.14) protein_coding-promoter-TSS (ENSMUSG00000062202.14) -4150 ENSMUSG00000117835.1 ENSMUSG00000117835 ENSMUST00000237696 Gm50250 processed_transcript Interval_116630 chr4 116170427 116170679 + 0 NA Intergenic Intergenic -2819 ENSMUSG00000078593.2 ENSMUSG00000078593 ENSMUST00000106492 1700042G07Rik protein_coding Interval_93478 chr2 73427266 73427756 + 0 NA intron (ENSMUSG00000085768.1, intron 3 of 4) antisense-intron (ENSMUSG00000085768.1, intron 3 of 4) 5602 ENSMUSG00000085768.1 ENSMUSG00000085768 ENSMUST00000123663 Gm13707 antisense Interval_17931 chr10 80880403 80881905 + 0 NA intron (ENSMUSG00000059406.8, intron 2 of 18) protein_coding-intron (ENSMUSG00000059406.8, intron 1 of 17) 9306 ENSMUSG00000059406.8 ENSMUSG00000059406 ENSMUST00000105333 Tmprss9 protein_coding Interval_37917 chr12 73039223 73040345 + 0 NA TTS (ENSMUSG00000051367.8) protein_coding-TTS (ENSMUSG00000051367.8) 3031 ENSMUSG00000051367.8 ENSMUSG00000051367 ENSMUST00000175677 Six1 protein_coding Interval_13835 chr10 23610987 23611461 + 0 NA TTS (ENSMUSG00000112868.1) lincRNA-TTS (ENSMUSG00000112868.1) -1793 ENSMUSG00000111894.1 ENSMUSG00000111894 ENSMUST00000219823 Gm47843 lincRNA Interval_106979 chr3 102393105 102393991 + 0 NA intron (ENSMUSG00000105891.4, intron 2 of 4) lincRNA-intron (ENSMUSG00000105891.4, intron 2 of 4) -3541 ENSMUSG00000106459.1 ENSMUSG00000106459 ENSMUST00000197603 Gm43245 processed_pseudogene Interval_38906 chr12 83719439 83719951 + 0 NA intron (ENSMUSG00000019969.14, intron 5 of 6) protein_coding-intron (ENSMUSG00000019969.14, intron 5 of 11) 11762 ENSMUSG00000114050.1 ENSMUSG00000114050 ENSMUST00000222646 Gm47666 antisense Interval_54494 chr14 70219627 70220074 + 0 NA intron (ENSMUSG00000022092.11, intron 14 of 14) protein_coding-intron (ENSMUSG00000022092.11, intron 13 of 13) -7861 ENSMUSG00000022091.6 ENSMUSG00000022091 ENSMUST00000227929 Sorbs3 protein_coding Interval_111028 chr4 11306261 11306705 + 0 NA intron (ENSMUSG00000045205.16, intron 4 of 6) protein_coding-intron (ENSMUSG00000045205.16, intron 3 of 18) 15617 ENSMUSG00000045205.16 ENSMUSG00000045205 ENSMUST00000148524 Dpy19l4 protein_coding Interval_48186 chr13 97064444 97066013 + 0 NA Intergenic Intergenic -2058 ENSMUSG00000041817.14 ENSMUSG00000041817 ENSMUST00000042517 Fam169a protein_coding Interval_160601 chr8 110949896 110950989 + 0 NA TTS (ENSMUSG00000118587.1) unprocessed_pseudogene-TTS (ENSMUSG00000118587.1) 1029 ENSMUSG00000118587.1 ENSMUSG00000118587 ENSMUST00000239383 AC132945.1 unprocessed_pseudogene Interval_98075 chr2 147606348 147606599 + 0 NA Intergenic Intergenic 36704 ENSMUSG00000080844.1 ENSMUSG00000080844 ENSMUST00000117774 Gm14107 processed_pseudogene Interval_173857 chrX 106015395 106016017 + 0 NA promoter-TSS (ENSMUSG00000031231.4) protein_coding-promoter-TSS (ENSMUSG00000031231.4) -3685 ENSMUSG00000031231.4 ENSMUSG00000031231 ENSMUST00000155377 Cox7b protein_coding Interval_114774 chr4 85167875 85168925 + 0 NA Intergenic Intergenic -8127 ENSMUSG00000084267.1 ENSMUSG00000084267 ENSMUST00000119153 Gm12417 processed_pseudogene Interval_151567 chr7 123848205 123850541 + 0 NA Intergenic Intergenic 92836 ENSMUSG00000084484.1 ENSMUSG00000084484 ENSMUST00000122535 Gm23788 snRNA Interval_38911 chr12 83749066 83749798 + 0 NA Intergenic Intergenic 6670 ENSMUSG00000113881.1 ENSMUSG00000113881 ENSMUST00000221529 Gm18592 processed_pseudogene Interval_146414 chr7 45759368 45759611 + 0 NA promoter-TSS (ENSMUSG00000003271.17) protein_coding-promoter-TSS (ENSMUSG00000003271.17) 17440 ENSMUSG00000109602.1 ENSMUSG00000109602 ENSMUST00000211176 Gm31597 antisense Interval_73521 chr17 39010767 39011726 + 0 NA Intergenic Intergenic 18339 ENSMUSG00000117021.1 ENSMUSG00000117021 ENSMUST00000233915 Gm49826 processed_pseudogene Interval_135320 chr6 38308891 38309182 + 0 NA intron (ENSMUSG00000029826.14, intron 12 of 12) protein_coding-intron (ENSMUSG00000029826.14, intron 12 of 12) -9777 ENSMUSG00000047749.2 ENSMUSG00000047749 ENSMUST00000058524 Zc3hav1l protein_coding Interval_51466 chr14 27758235 27759260 + 0 NA intron (ENSMUSG00000040640.11, intron 1 of 7) protein_coding-intron (ENSMUSG00000040640.11, intron 2 of 15) 44370 ENSMUSG00000114653.1 ENSMUSG00000114653 ENSMUST00000224481 Gm18398 processed_pseudogene Interval_13082 chr10 11216574 11216830 + 0 NA exon (ENSMUSG00000090112.8, exon 30 of 30) protein_coding-exon (ENSMUSG00000090112.8, exon 30 of 30) -3723 ENSMUSG00000090070.1 ENSMUSG00000090070 ENSMUST00000161579 Gm16577 antisense Interval_149304 chr7 97312190 97312773 + 0 NA TTS (ENSMUSG00000035713.15) protein_coding-TTS (ENSMUSG00000035713.15) 3513 ENSMUSG00000035713.15 ENSMUSG00000035713 ENSMUST00000181354 Usp35 protein_coding Interval_28986 chr11 79736862 79737645 + 0 NA Intergenic Intergenic 10853 ENSMUSG00000065489.1 ENSMUSG00000065489 ENSMUST00000083555 Mir365-2 miRNA Interval_21350 chr10 128111558 128112482 + 0 NA exon (ENSMUSG00000040054.17, exon 4 of 4) protein_coding-exon (ENSMUSG00000040054.17, exon 4 of 4) 20438 ENSMUSG00000040054.17 ENSMUSG00000040054 ENSMUST00000219980 Baz2a protein_coding Interval_41516 chr12 115685085 115685876 + 0 NA Intergenic Intergenic -3360 ENSMUSG00000108559.1 ENSMUSG00000108559 ENSMUST00000205482 Gm44782 unprocessed_pseudogene Interval_6989 chr1 121584447 121584648 + 0 NA Intergenic Intergenic -25332 ENSMUSG00000001674.11 ENSMUSG00000001674 ENSMUST00000131471 Ddx18 protein_coding Interval_75614 chr17 69303365 69304187 + 0 NA Intergenic Intergenic -12218 ENSMUSG00000117323.1 ENSMUSG00000117323 ENSMUST00000232963 Gm36487 lincRNA Interval_85703 chr19 29812538 29813505 + 0 NA promoter-TSS (ENSMUSG00000074909.5) protein_coding-promoter-TSS (ENSMUSG00000074909.5) -67 ENSMUSG00000074909.5 ENSMUSG00000074909 ENSMUST00000235906 Ranbp6 protein_coding Interval_119294 chr4 136701288 136701593 + 0 NA intron (ENSMUSG00000028664.14, intron 3 of 15) protein_coding-intron (ENSMUSG00000028664.14, intron 3 of 15) -7400 ENSMUSG00000028664.14 ENSMUSG00000028664 ENSMUST00000144573 Ephb2 protein_coding Interval_47205 chr13 78024602 78025944 + 0 NA exon (ENSMUSG00000093668.3, exon 1 of 1) protein_coding-exon (ENSMUSG00000093668.3, exon 1 of 1) 371 ENSMUSG00000093668.3 ENSMUSG00000093668 ENSMUST00000175955 Pou5f2 protein_coding Interval_79254 chr18 27728542 27729503 + 0 NA Intergenic Intergenic -22455 ENSMUSG00000117529.1 ENSMUSG00000117529 ENSMUST00000234608 Gm49978 lincRNA Interval_174258 chrX 142305100 142306561 + 0 NA exon (ENSMUSG00000090122.3, exon 1 of 1) protein_coding-exon (ENSMUSG00000090122.3, exon 1 of 1) 464 ENSMUSG00000090122.3 ENSMUSG00000090122 ENSMUST00000134825 Kcne1l protein_coding Interval_159853 chr8 104369741 104369943 + 0 NA intron (ENSMUSG00000096188.1, intron 1 of 3) protein_coding-intron (ENSMUSG00000096188.1, intron 1 of 3) -6174 ENSMUSG00000110486.1 ENSMUSG00000110486 ENSMUST00000212110 Gm45877 sense_intronic Interval_119617 chr4 138762101 138762431 + 0 NA Intergenic Intergenic -4640 ENSMUSG00000028749.7 ENSMUSG00000028749 ENSMUST00000030526 Pla2g2f protein_coding Interval_21435 chr10 128588991 128591153 + 0 NA promoter-TSS (ENSMUSG00000018166.8) protein_coding-promoter-TSS (ENSMUSG00000018166.8) -420 ENSMUSG00000018166.8 ENSMUSG00000018166 ENSMUST00000082059 Erbb3 protein_coding Interval_170012 chr9 103636357 103637092 + 0 NA intron (ENSMUSG00000042757.16, intron 2 of 3) protein_coding-intron (ENSMUSG00000042757.16, intron 1 of 4) -36560 ENSMUSG00000102441.1 ENSMUSG00000102441 ENSMUST00000195052 Gm38032 TEC Interval_160126 chr8 106608196 106609621 + 0 NA intron (ENSMUSG00000000303.12, intron 2 of 16) protein_coding-intron (ENSMUSG00000000303.12, intron 2 of 15) 5529 ENSMUSG00000000303.12 ENSMUSG00000000303 ENSMUST00000136580 Cdh1 protein_coding Interval_144504 chr7 25529998 25532441 + 0 NA intron (ENSMUSG00000053714.8, intron 5 of 6) protein_coding-intron (ENSMUSG00000054385.14, intron 2 of 8) 5874 ENSMUSG00000054385.14 ENSMUSG00000054385 ENSMUST00000145681 Ceacam2 protein_coding Interval_141145 chr6 125247021 125247725 + 0 NA Intergenic Intergenic -10370 ENSMUSG00000030336.14 ENSMUSG00000030336 ENSMUST00000152650 Cd27 protein_coding Interval_96256 chr2 121007745 121009017 + 0 NA promoter-TSS (ENSMUSG00000023572.16) protein_coding-promoter-TSS (ENSMUSG00000023572.16) -91 ENSMUSG00000023572.16 ENSMUSG00000023572 ENSMUST00000129717 Ccndbp1 protein_coding Interval_50473 chr14 13901183 13902210 + 0 NA intron (ENSMUSG00000084902.2, intron 2 of 18) protein_coding-intron (ENSMUSG00000084902.2, intron 2 of 18) 12782 ENSMUSG00000084902.2 ENSMUSG00000084902 ENSMUST00000144914 Gm281 protein_coding Interval_55690 chr14 99058799 99059521 + 0 NA intron (ENSMUSG00000022070.7, intron 5 of 12) protein_coding-intron (ENSMUSG00000022070.7, intron 5 of 11) 12706 ENSMUSG00000022070.7 ENSMUSG00000022070 ENSMUST00000227128 Bora protein_coding Interval_166265 chr9 57883490 57884271 + 0 NA Intergenic Intergenic -28754 ENSMUSG00000055720.10 ENSMUSG00000055720 ENSMUST00000215936 Ubl7 protein_coding Interval_174843 chrX 169472199 169472536 + 0 NA exon (ENSMUSG00000087587.1, exon 4 of 6) lincRNA-exon (ENSMUSG00000087587.1, exon 4 of 6) 24537 ENSMUSG00000087587.1 ENSMUSG00000087587 ENSMUST00000129410 Gm15245 lincRNA Interval_59156 chr15 45114003 45115215 + 0 NA exon (ENSMUSG00000022342.6, exon 1 of 3) protein_coding-exon (ENSMUSG00000022342.6, exon 1 of 3) 311 ENSMUSG00000022342.6 ENSMUSG00000022342 ENSMUST00000228536 Kcnv1 protein_coding Interval_19546 chr10 102957639 102958182 + 0 NA Intergenic Intergenic 71206 ENSMUSG00000036602.14 ENSMUSG00000036602 ENSMUST00000218508 Alx1 protein_coding Interval_105727 chr3 88949535 88951381 + 0 NA promoter-TSS (ENSMUSG00000068921.14) protein_coding-promoter-TSS (ENSMUSG00000068921.14) 579 ENSMUSG00000068921.14 ENSMUSG00000068921 ENSMUST00000172790 Dap3 protein_coding Interval_72231 chr17 28710231 28710432 + 0 NA intron (ENSMUSG00000053436.15, intron 2 of 12) protein_coding-intron (ENSMUSG00000053436.15, intron 1 of 11) -15752 ENSMUSG00000117145.1 ENSMUSG00000117145 ENSMUST00000233003 Gm4356 protein_coding Interval_3445 chr1 58403656 58404274 + 0 NA TTS (ENSMUSG00000051223.14) protein_coding-TTS (ENSMUSG00000051223.14) 10841 ENSMUSG00000051223.14 ENSMUSG00000051223 ENSMUST00000186949 Bzw1 protein_coding Interval_120016 chr4 141385115 141385664 + 0 NA intron (ENSMUSG00000033770.13, intron 17 of 18) protein_coding-intron (ENSMUSG00000033770.13, intron 18 of 19) 9438 ENSMUSG00000033770.13 ENSMUSG00000033770 ENSMUST00000133676 Clcnka protein_coding Interval_105540 chr3 87515438 87516167 + 0 NA Intergenic Intergenic -9776 ENSMUSG00000003382.18 ENSMUSG00000003382 ENSMUST00000152010 Etv3 protein_coding Interval_99053 chr2 156882251 156882862 + 0 NA intron (ENSMUSG00000027636.11, intron 2 of 7) protein_coding-intron (ENSMUSG00000027636.11, intron 2 of 7) 4636 ENSMUSG00000027636.11 ENSMUSG00000027636 ENSMUST00000109561 Sla2 protein_coding Interval_120963 chr4 151968056 151969497 + 0 NA promoter-TSS (ENSMUSG00000039768.16) protein_coding-promoter-TSS (ENSMUSG00000039768.16) -10208 ENSMUSG00000039768.16 ENSMUSG00000039768 ENSMUST00000124955 Dnajc11 protein_coding Interval_150443 chr7 110671281 110671554 + 0 NA Intergenic Intergenic 28317 ENSMUSG00000109700.1 ENSMUSG00000109700 ENSMUST00000210822 Gm21123 lincRNA Interval_120409 chr4 148428463 148430247 + 0 NA Intergenic Intergenic 14130 ENSMUSG00000064648.2 ENSMUSG00000064648 ENSMUST00000082714 Gm23303 snRNA Interval_100804 chr2 172612941 172614665 + 0 NA Intergenic Intergenic 62812 ENSMUSG00000028640.11 ENSMUSG00000028640 ENSMUST00000142633 Tfap2c protein_coding Interval_37773 chr12 71888896 71889743 + 0 NA promoter-TSS (ENSMUSG00000034574.10) protein_coding-promoter-TSS (ENSMUSG00000034574.10) -42028 ENSMUSG00000098224.1 ENSMUSG00000098224 ENSMUST00000183329 Gm7985 processed_pseudogene Interval_118132 chr4 129130201 129131440 + 0 NA Intergenic Intergenic -4271 ENSMUSG00000087416.1 ENSMUSG00000087416 ENSMUST00000124746 Gm15906 lincRNA Interval_150896 chr7 116219569 116221502 + 0 NA intron (ENSMUSG00000045659.18, intron 3 of 18) protein_coding-intron (ENSMUSG00000045659.18, intron 3 of 26) 62208 ENSMUSG00000108650.1 ENSMUSG00000108650 ENSMUST00000205675 Gm44867 sense_intronic Interval_97141 chr2 131656010 131656333 + 0 NA intron (ENSMUSG00000086831.1, intron 2 of 2) antisense-intron (ENSMUSG00000086831.1, intron 2 of 2) 65667 ENSMUSG00000086831.1 ENSMUSG00000086831 ENSMUST00000138080 Gm14280 antisense Interval_19724 chr10 108315298 108315971 + 0 NA Intergenic Intergenic -17183 ENSMUSG00000035873.8 ENSMUSG00000035873 ENSMUST00000218332 Pawr protein_coding Interval_144537 chr7 25774076 25775207 + 0 NA promoter-TSS (ENSMUSG00000002602.16) protein_coding-promoter-TSS (ENSMUSG00000002602.16) 12425 ENSMUSG00000002602.16 ENSMUSG00000002602 ENSMUST00000137383 Axl protein_coding Interval_19654 chr10 107265232 107265465 + 0 NA Intergenic Intergenic -7046 ENSMUSG00000019906.15 ENSMUSG00000019906 ENSMUST00000218031 Lin7a protein_coding Interval_106782 chr3 100754761 100754978 + 0 NA Intergenic Intergenic -16156 ENSMUSG00000087759.1 ENSMUSG00000087759 ENSMUST00000157134 Gm23465 misc_RNA Interval_110844 chr4 8912750 8913042 + 0 NA Intergenic Intergenic -28363 ENSMUSG00000083786.1 ENSMUSG00000083786 ENSMUST00000119493 Rps18-ps2 processed_pseudogene Interval_174577 chrX 159321115 159321547 + 0 NA intron (ENSMUSG00000031309.15, intron 5 of 5) protein_coding-intron (ENSMUSG00000031309.15, intron 4 of 21) 45055 ENSMUSG00000031309.15 ENSMUSG00000031309 ENSMUST00000149939 Rps6ka3 protein_coding Interval_115038 chr4 88782169 88782806 + 0 NA exon (ENSMUSG00000096854.1, exon 1 of 1) protein_coding-exon (ENSMUSG00000096854.1, exon 1 of 1) 356 ENSMUSG00000096854.1 ENSMUSG00000096854 ENSMUST00000105144 Ifnz protein_coding Interval_152536 chr7 133980866 133981085 + 0 NA TTS (ENSMUSG00000054555.11) protein_coding-TTS (ENSMUSG00000054555.11) -41234 ENSMUSG00000093032.1 ENSMUSG00000093032 ENSMUST00000175291 Gm23631 miRNA Interval_15918 chr10 59283345 59284047 + 0 NA Intergenic Intergenic -39672 ENSMUSG00000019916.14 ENSMUSG00000019916 ENSMUST00000105466 P4ha1 protein_coding Interval_171455 chr9 118462845 118463266 + 0 NA Intergenic Intergenic 4009 ENSMUSG00000084515.1 ENSMUSG00000084515 ENSMUST00000122566 Gm22479 snRNA Interval_61831 chr15 84481216 84481446 + 0 NA Intergenic Intergenic -34234 ENSMUSG00000062760.11 ENSMUSG00000062760 ENSMUST00000186527 Shisal1 protein_coding Interval_120986 chr4 152060405 152060624 + 0 NA TTS (ENSMUSG00000028948.16) protein_coding-TTS (ENSMUSG00000028948.16) -15772 ENSMUSG00000039713.17 ENSMUSG00000039713 ENSMUST00000142412 Plekhg5 protein_coding Interval_93421 chr2 72955933 72956969 + 0 NA TTS (ENSMUSG00000084213.1) processed_pseudogene-TTS (ENSMUSG00000084213.1) 553 ENSMUSG00000084213.1 ENSMUSG00000084213 ENSMUST00000118080 Hspe1-ps5 processed_pseudogene Interval_146300 chr7 45211632 45212643 + 0 NA promoter-TSS (ENSMUSG00000030792.8) protein_coding-promoter-TSS (ENSMUSG00000030792.8) -325 ENSMUSG00000030792.8 ENSMUSG00000030792 ENSMUST00000210454 Dkkl1 protein_coding Interval_20316 chr10 116838037 116838418 + 0 NA intron (ENSMUSG00000034057.8, intron 6 of 24) protein_coding-intron (ENSMUSG00000034057.8, intron 6 of 24) 58692 ENSMUSG00000034057.8 ENSMUSG00000034057 ENSMUST00000048229 Myrfl protein_coding Interval_125090 chr5 64375565 64376153 + 0 NA Intergenic Intergenic -7595 ENSMUSG00000105443.1 ENSMUSG00000105443 ENSMUST00000200306 Gm43837 lincRNA Interval_19260 chr10 95862073 95863310 + 0 NA Intergenic Intergenic 8108 ENSMUSG00000111992.1 ENSMUSG00000111992 ENSMUST00000218412 Gm47724 processed_pseudogene Interval_123944 chr5 36784536 36784800 + 0 NA Intergenic Intergenic 12104 ENSMUSG00000055302.5 ENSMUSG00000055302 ENSMUST00000068795 Mrfap1 protein_coding Interval_165056 chr9 44184684 44185051 + 0 NA intron (ENSMUSG00000034342.9, intron 2 of 15) protein_coding-intron (ENSMUSG00000034342.9, intron 2 of 14) -4166 ENSMUSG00000110972.1 ENSMUSG00000110972 ENSMUST00000214603 5830462O15Rik TEC Interval_173023 chrX 64561215 64561638 + 0 NA Intergenic Intergenic 64842 ENSMUSG00000084459.1 ENSMUSG00000084459 ENSMUST00000122510 Gm24598 snoRNA Interval_159216 chr8 91806522 91806911 + 0 NA exon (ENSMUSG00000046413.14, exon 5 of 5) antisense-exon (ENSMUSG00000046413.14, exon 5 of 5) 4541 ENSMUSG00000046413.14 ENSMUSG00000046413 ENSMUST00000133528 Irx3os antisense Interval_112117 chr4 34808028 34809089 + 0 NA exon (ENSMUSG00000039967.14, exon 8 of 8) protein_coding-exon (ENSMUSG00000039967.14, exon 8 of 8) -30203 ENSMUSG00000028295.14 ENSMUSG00000028295 ENSMUST00000131295 Smim8 protein_coding Interval_41572 chr12 116421364 116421766 + 0 NA intron (ENSMUSG00000042029.7, intron 9 of 28) protein_coding-intron (ENSMUSG00000042029.7, intron 9 of 28) -16355 ENSMUSG00000112980.1 ENSMUSG00000112980 ENSMUST00000220477 D430020J02Rik bidirectional_promoter_lncRNA Interval_127050 chr5 99948498 99949723 + 0 NA intron (ENSMUSG00000105078.2, intron 5 of 5) protein_coding-intron (ENSMUSG00000105078.2, intron 5 of 5) -20729 ENSMUSG00000089062.1 ENSMUSG00000089062 ENSMUST00000158437 Gm22838 snRNA Interval_71005 chr17 17140091 17141172 + 0 NA intron (ENSMUSG00000095990.1, intron 1 of 3) protein_coding-intron (ENSMUSG00000095990.1, intron 1 of 3) 19216 ENSMUSG00000095990.1 ENSMUSG00000095990 ENSMUST00000147630 Zfp97 protein_coding Interval_81042 chr18 53249726 53250736 + 0 NA intron (ENSMUSG00000024535.16, intron 1 of 3) protein_coding-intron (ENSMUSG00000024535.16, intron 1 of 7) 4503 ENSMUSG00000024535.16 ENSMUSG00000024535 ENSMUST00000025417 Snx24 protein_coding Interval_34931 chr12 13763636 13764254 + 0 NA Intergenic Intergenic -10280 ENSMUSG00000097973.1 ENSMUSG00000097973 ENSMUST00000182021 Gm4929 processed_pseudogene Interval_162223 chr8 126102596 126103248 + 0 NA Intergenic Intergenic -36073 ENSMUSG00000057060.8 ENSMUSG00000057060 ENSMUST00000108759 Slc35f3 protein_coding Interval_17905 chr10 80730551 80731017 + 0 NA intron (ENSMUSG00000020198.8, intron 3 of 8) protein_coding-intron (ENSMUSG00000020198.8, intron 3 of 30) -9594 ENSMUSG00000020198.8 ENSMUSG00000020198 ENSMUST00000219356 Ap3d1 protein_coding Interval_154626 chr8 22135729 22136842 + 0 NA intron (ENSMUSG00000031478.16, intron 10 of 14) protein_coding-intron (ENSMUSG00000031478.16, intron 11 of 15) 26209 ENSMUSG00000031478.16 ENSMUSG00000031478 ENSMUST00000151371 Nek3 protein_coding Interval_12127 chr1 189916228 189917264 + 0 NA promoter-TSS (ENSMUSG00000103467.1) TEC-promoter-TSS (ENSMUSG00000103467.1) -787 ENSMUSG00000103467.1 ENSMUSG00000103467 ENSMUST00000191702 Gm38245 TEC Interval_116078 chr4 107457794 107459177 + 0 NA intron (ENSMUSG00000034762.9, intron 1 of 9) protein_coding-intron (ENSMUSG00000034762.9, intron 2 of 10) 23913 ENSMUSG00000092723.1 ENSMUSG00000092723 ENSMUST00000174982 Gm24804 miRNA Interval_56819 chr14 122262537 122263692 + 0 NA intron (ENSMUSG00000025545.10, intron 1 of 7) protein_coding-intron (ENSMUSG00000025545.10, intron 1 of 7) 5073 ENSMUSG00000025545.10 ENSMUSG00000025545 ENSMUST00000226136 Clybl protein_coding Interval_13355 chr10 16858337 16858579 + 0 NA Intergenic Intergenic 61485 ENSMUSG00000112499.1 ENSMUSG00000112499 ENSMUST00000220087 Gm47736 processed_pseudogene Interval_134196 chr6 22611863 22612087 + 0 NA Intergenic Intergenic -10943 ENSMUSG00000107282.1 ENSMUSG00000107282 ENSMUST00000201550 Gm43630 processed_pseudogene Interval_62202 chr15 88777637 88778528 + 0 NA intron (ENSMUSG00000034333.15, intron 2 of 2) protein_coding-intron (ENSMUSG00000034333.15, intron 2 of 2) 26322 ENSMUSG00000034333.15 ENSMUSG00000034333 ENSMUST00000160975 Zbed4 protein_coding Interval_75158 chr17 64122568 64122854 + 0 NA intron (ENSMUSG00000000127.15, intron 15 of 17) protein_coding-intron (ENSMUSG00000000127.15, intron 15 of 17) 198904 ENSMUSG00000080455.1 ENSMUSG00000080455 ENSMUST00000116805 Gm24194 miRNA Interval_114087 chr4 63331218 63331490 + 0 NA exon (ENSMUSG00000045672.15, exon 60 of 61) protein_coding-exon (ENSMUSG00000045672.15, exon 60 of 61) -13206 ENSMUSG00000039196.2 ENSMUSG00000039196 ENSMUST00000030044 Orm1 protein_coding Interval_123108 chr5 29747568 29748695 + 0 NA intron (ENSMUSG00000029131.14, intron 1 of 1) protein_coding-intron (ENSMUSG00000029131.14, intron 1 of 9) 12142 ENSMUSG00000029131.14 ENSMUSG00000029131 ENSMUST00000139126 Dnajb6 protein_coding Interval_164202 chr9 32449978 32450520 + 0 NA intron (ENSMUSG00000016087.13, intron 5 of 6) protein_coding-intron (ENSMUSG00000016087.13, intron 5 of 8) -3321 ENSMUSG00000064492.1 ENSMUSG00000064492 ENSMUST00000082558 Gm22060 snRNA Interval_87173 chr19 46598555 46599690 + 0 NA promoter-TSS (ENSMUSG00000047731.17) protein_coding-promoter-TSS (ENSMUSG00000047731.17) -2 ENSMUSG00000047731.17 ENSMUSG00000047731 ENSMUST00000111855 Wbp1l protein_coding Interval_94956 chr2 102152690 102153009 + 0 NA intron (ENSMUSG00000048058.17, intron 1 of 5) protein_coding-intron (ENSMUSG00000048058.17, intron 1 of 5) -14730 ENSMUSG00000048058.17 ENSMUSG00000048058 ENSMUST00000127888 Ldlrad3 protein_coding Interval_39717 chr12 95248073 95248534 + 0 NA Intergenic Intergenic -76604 ENSMUSG00000112262.1 ENSMUSG00000112262 ENSMUST00000218579 Gm48013 unprocessed_pseudogene Interval_139041 chr6 94507824 94510340 + 0 NA intron (ENSMUSG00000045100.11, intron 2 of 9) protein_coding-intron (ENSMUSG00000045100.11, intron 2 of 9) 8533 ENSMUSG00000045100.11 ENSMUSG00000045100 ENSMUST00000203484 Slc25a26 protein_coding Interval_50750 chr14 19102392 19102597 + 0 NA promoter-TSS (ENSMUSG00000114636.1) processed_pseudogene-promoter-TSS (ENSMUSG00000114636.1) 27 ENSMUSG00000114636.1 ENSMUSG00000114636 ENSMUST00000224364 Gm18275 processed_pseudogene Interval_157750 chr8 72737911 72738119 + 0 NA intron (ENSMUSG00000031622.16, intron 5 of 5) protein_coding-intron (ENSMUSG00000031622.16, intron 5 of 18) -2836 ENSMUSG00000031622.16 ENSMUSG00000031622 ENSMUST00000212677 Sin3b protein_coding Interval_50892 chr14 20558358 20558580 + 0 NA intron (ENSMUSG00000034235.17, intron 18 of 20) protein_coding-intron (ENSMUSG00000034235.17, intron 18 of 20) -6277 ENSMUSG00000084925.8 ENSMUSG00000084925 ENSMUST00000124940 1810062O18Rik antisense Interval_138133 chr6 85380650 85381824 + 0 NA Intergenic Intergenic -39600 ENSMUSG00000051343.11 ENSMUSG00000051343 ENSMUST00000204504 Rab11fip5 protein_coding Interval_67383 chr16 48262100 48263370 + 0 NA TTS (ENSMUSG00000116756.1) processed_pseudogene-TTS (ENSMUSG00000116756.1) 921 ENSMUSG00000116756.1 ENSMUSG00000116756 ENSMUST00000232184 Gm49770 processed_pseudogene Interval_101049 chr2 174569131 174569876 + 0 NA Intergenic Intergenic -21727 ENSMUSG00000082353.1 ENSMUSG00000082353 ENSMUST00000118738 Vmn1r-ps1 processed_pseudogene Interval_16868 chr10 69364865 69365794 + 0 NA Intergenic Intergenic 7983 ENSMUSG00000112509.1 ENSMUSG00000112509 ENSMUST00000219632 Gm47211 processed_pseudogene Interval_45123 chr13 52530041 52531342 + 0 NA exon (ENSMUSG00000047842.7, exon 1 of 2) protein_coding-exon (ENSMUSG00000047842.7, exon 1 of 2) 588 ENSMUSG00000047842.7 ENSMUSG00000047842 ENSMUST00000057442 Diras2 protein_coding Interval_37672 chr12 71003336 71004402 + 0 NA intron (ENSMUSG00000085622.9, intron 3 of 3) processed_transcript-intron (ENSMUSG00000085622.9, intron 3 of 3) 11726 ENSMUSG00000085622.9 ENSMUSG00000085622 ENSMUST00000222159 3110056K07Rik processed_transcript Interval_65665 chr16 24977279 24977464 + 0 NA intron (ENSMUSG00000033306.15, intron 3 of 3) protein_coding-intron (ENSMUSG00000033306.15, intron 12 of 12) -82268 ENSMUSG00000096960.1 ENSMUSG00000096960 ENSMUST00000181655 A230028O05Rik lincRNA Interval_13505 chr10 18835839 18836364 + 0 NA intron (ENSMUSG00000111474.1, intron 4 of 4) antisense-intron (ENSMUSG00000111474.1, intron 4 of 4) -4171 ENSMUSG00000110737.1 ENSMUSG00000110737 ENSMUST00000215429 4930444F02Rik lincRNA Interval_122182 chr5 19102366 19103860 + 0 NA Intergenic Intergenic 98492 ENSMUSG00000106498.1 ENSMUSG00000106498 ENSMUST00000197967 Gm43032 TEC Interval_153131 chr7 141546134 141546603 + 0 NA Intergenic Intergenic -6536 ENSMUSG00000025512.15 ENSMUSG00000025512 ENSMUST00000133359 Chid1 protein_coding Interval_95816 chr2 116893980 116894666 + 0 NA Intergenic Intergenic -5871 ENSMUSG00000085316.1 ENSMUSG00000085316 ENSMUST00000155323 D330050G23Rik lincRNA Interval_148241 chr7 80052343 80052608 + 0 NA intron (ENSMUSG00000048897.15, intron 1 of 1) protein_coding-intron (ENSMUSG00000048897.15, intron 1 of 4) 15770 ENSMUSG00000108365.1 ENSMUSG00000108365 ENSMUST00000206449 Gm44951 TEC Interval_124115 chr5 38452561 38452787 + 0 NA intron (ENSMUSG00000005107.13, intron 5 of 13) protein_coding-intron (ENSMUSG00000005107.13, intron 4 of 10) 27508 ENSMUSG00000005107.13 ENSMUSG00000005107 ENSMUST00000156076 Slc2a9 protein_coding Interval_91806 chr2 49744461 49745680 + 0 NA intron (ENSMUSG00000026764.15, intron 2 of 4) protein_coding-intron (ENSMUSG00000026764.15, intron 21 of 25) 12459 ENSMUSG00000026764.15 ENSMUSG00000026764 ENSMUST00000132968 Kif5c protein_coding Interval_119383 chr4 137370075 137370728 + 0 NA Intergenic Intergenic -12681 ENSMUSG00000006699.17 ENSMUSG00000006699 ENSMUST00000030417 Cdc42 protein_coding Interval_63909 chr16 4521825 4522785 + 0 NA intron (ENSMUSG00000022519.14, intron 1 of 1) protein_coding-intron (ENSMUSG00000022519.14, intron 1 of 1) -17003 ENSMUSG00000083585.1 ENSMUSG00000083585 ENSMUST00000122114 Gm15885 processed_pseudogene Interval_100642 chr2 170672898 170674043 + 0 NA Intergenic Intergenic -11005 ENSMUSG00000085158.1 ENSMUSG00000085158 ENSMUST00000147141 Gm14264 lincRNA Interval_142122 chr6 137414349 137415163 + 0 NA TTS (ENSMUSG00000030223.14) protein_coding-TTS (ENSMUSG00000030223.14) 3997 ENSMUSG00000030223.14 ENSMUSG00000030223 ENSMUST00000203127 Ptpro protein_coding Interval_158471 chr8 83914893 83915853 + 0 NA intron (ENSMUSG00000013033.16, intron 1 of 22) protein_coding-intron (ENSMUSG00000013033.16, intron 1 of 23) 14183 ENSMUSG00000105569.1 ENSMUSG00000105569 ENSMUST00000199528 Gm44450 miRNA Interval_135388 chr6 38875490 38876896 + 0 NA promoter-TSS (ENSMUSG00000061436.15) protein_coding-promoter-TSS (ENSMUSG00000061436.15) -270 ENSMUSG00000061436.15 ENSMUSG00000061436 ENSMUST00000114855 Hipk2 protein_coding Interval_2702 chr1 43570704 43571789 + 0 NA TTS (ENSMUSG00000066877.11) protein_coding-TTS (ENSMUSG00000066877.11) 10973 ENSMUSG00000103945.1 ENSMUSG00000103945 ENSMUST00000193169 Gm38228 TEC Interval_19886 chr10 110927592 110927834 + 0 NA intron (ENSMUSG00000020186.7, intron 1 of 4) protein_coding-intron (ENSMUSG00000020186.7, intron 1 of 5) 7523 ENSMUSG00000020186.7 ENSMUSG00000020186 ENSMUST00000220301 Csrp2 protein_coding Interval_157758 chr8 72790110 72790371 + 0 NA Intergenic Intergenic 5247 ENSMUSG00000110563.1 ENSMUSG00000110563 ENSMUST00000212908 Gm45791 processed_pseudogene Interval_62165 chr15 88428186 88428877 + 0 NA Intergenic Intergenic -112899 ENSMUSG00000115880.1 ENSMUSG00000115880 ENSMUST00000230151 4930445N06Rik lincRNA Interval_101879 chr3 10353848 10354349 + 0 NA Intergenic Intergenic -2781 ENSMUSG00000039795.14 ENSMUSG00000039795 ENSMUST00000127313 Zfand1 protein_coding Interval_37517 chr12 69524349 69524739 + 0 NA Intergenic Intergenic 36793 ENSMUSG00000095776.1 ENSMUSG00000095776 ENSMUST00000177928 Gm23018 miRNA Interval_143663 chr7 14086033 14088537 + 0 NA intron (ENSMUSG00000074375.3, intron 3 of 5) protein_coding-intron (ENSMUSG00000074375.3, intron 3 of 5) 35759 ENSMUSG00000074375.3 ENSMUSG00000074375 ENSMUST00000098809 Sult2a3 protein_coding Interval_43906 chr13 37976799 37977251 + 0 NA exon (ENSMUSG00000021427.10, exon 8 of 8) protein_coding-exon (ENSMUSG00000021427.10, exon 8 of 8) 17058 ENSMUSG00000021427.10 ENSMUSG00000021427 ENSMUST00000224399 Ssr1 protein_coding Interval_25230 chr11 45719506 45720310 + 0 NA Intergenic Intergenic 80525 ENSMUSG00000077320.1 ENSMUSG00000077320 ENSMUST00000104132 Gm22284 snoRNA Interval_44230 chr13 42549147 42549369 + 0 NA Intergenic Intergenic -20205 ENSMUSG00000113367.1 ENSMUSG00000113367 ENSMUST00000222839 Gm47125 processed_pseudogene Interval_126032 chr5 76969055 76969291 + 0 NA Intergenic Intergenic 3016 ENSMUSG00000029247.17 ENSMUSG00000029247 ENSMUST00000154688 Paics protein_coding Interval_16446 chr10 62908791 62909358 + 0 NA promoter-TSS (ENSMUSG00000047146.17) protein_coding-promoter-TSS (ENSMUSG00000047146.17) -10485 ENSMUSG00000088674.1 ENSMUSG00000088674 ENSMUST00000158049 Gm22803 misc_RNA Interval_92519 chr2 60255519 60256280 + 0 NA intron (ENSMUSG00000060703.12, intron 4 of 5) protein_coding-intron (ENSMUSG00000060703.12, intron 4 of 4) 19675 ENSMUSG00000080198.2 ENSMUSG00000080198 ENSMUST00000116410 Rpl10a-ps4 processed_pseudogene Interval_163914 chr9 28402928 28404810 + 0 NA promoter-TSS (ENSMUSG00000062257.13) protein_coding-promoter-TSS (ENSMUSG00000062257.13) 111121 ENSMUSG00000106021.1 ENSMUSG00000106021 ENSMUST00000199274 Gm44316 miRNA Interval_114385 chr4 74529490 74529680 + 0 NA Intergenic Intergenic -105629 ENSMUSG00000099334.1 ENSMUSG00000099334 ENSMUST00000178125 Gm26379 snoRNA Interval_76528 chr17 80785246 80786658 + 0 NA Intergenic Intergenic 57821 ENSMUSG00000054957.5 ENSMUSG00000054957 ENSMUST00000068277 Gm9959 pseudogene Interval_153173 chr7 142060307 142061598 + 0 NA promoter-TSS (ENSMUSG00000025147.7) protein_coding-promoter-TSS (ENSMUSG00000025147.7) -7877 ENSMUSG00000109638.1 ENSMUSG00000109638 ENSMUST00000210243 Gm45630 TEC Interval_55095 chr14 77997521 77998461 + 0 NA intron (ENSMUSG00000022014.15, intron 11 of 11) protein_coding-intron (ENSMUSG00000022014.15, intron 11 of 11) -21737 ENSMUSG00000115517.1 ENSMUSG00000115517 ENSMUST00000226503 Gm48954 lincRNA Interval_93809 chr2 77108005 77108844 + 0 NA exon (ENSMUSG00000044033.16, exon 6 of 12) protein_coding-exon (ENSMUSG00000044033.16, exon 6 of 12) -34072 ENSMUSG00000105724.1 ENSMUSG00000105724 ENSMUST00000200081 Gm44360 miRNA Interval_140988 chr6 123879109 123879408 + 0 NA Intergenic Intergenic -7138 ENSMUSG00000108240.1 ENSMUSG00000108240 ENSMUST00000204445 Gm5317 processed_pseudogene Interval_122916 chr5 27323339 27325017 + 0 NA intron (ENSMUSG00000061576.15, intron 1 of 25) protein_coding-intron (ENSMUSG00000061576.15, intron 1 of 25) 105993 ENSMUSG00000106537.1 ENSMUSG00000106537 ENSMUST00000200263 Gm43502 TEC Interval_103143 chr3 35908432 35908844 + 0 NA TTS (ENSMUSG00000027708.14) protein_coding-TTS (ENSMUSG00000027708.14) 23696 ENSMUSG00000027708.14 ENSMUSG00000027708 ENSMUST00000196174 Dcun1d1 protein_coding Interval_75448 chr17 66595697 66596314 + 0 NA Intergenic Intergenic -1384 ENSMUSG00000024105.3 ENSMUSG00000024105 ENSMUST00000024914 Themis3 protein_coding Interval_60440 chr15 73765073 73767001 + 0 NA intron (ENSMUSG00000072487.11, intron 21 of 29) protein_coding-intron (ENSMUSG00000072487.11, intron 21 of 25) 18319 ENSMUSG00000059895.13 ENSMUSG00000059895 ENSMUST00000053232 Ptp4a3 protein_coding Interval_98760 chr2 154773830 154774348 + 0 NA Intergenic Intergenic -4059 ENSMUSG00000098640.1 ENSMUSG00000098640 ENSMUST00000185009 Gm14214 protein_coding Interval_73080 chr17 34655280 34656139 + 0 NA TTS (ENSMUSG00000015461.15) protein_coding-TTS (ENSMUSG00000015461.15) -4748 ENSMUSG00000033327.18 ENSMUSG00000033327 ENSMUST00000087399 Tnxb protein_coding Interval_82972 chr18 80104756 80105184 + 0 NA intron (ENSMUSG00000056214.9, intron 2 of 2) protein_coding-intron (ENSMUSG00000056214.9, intron 2 of 2) -15008 ENSMUSG00000096597.1 ENSMUSG00000096597 ENSMUST00000178391 Gm21886 protein_coding Interval_64545 chr16 13205258 13206180 + 0 NA Intergenic Intergenic 73328 ENSMUSG00000022545.13 ENSMUSG00000022545 ENSMUST00000156393 Ercc4 protein_coding Interval_102830 chr3 31753743 31753947 + 0 NA Intergenic Intergenic -63260 ENSMUSG00000103499.5 ENSMUSG00000103499 ENSMUST00000192046 Gm6558 transcribed_unprocessed_pseudogene Interval_57097 chr15 6265235 6266387 + 0 NA Intergenic Intergenic 44102 ENSMUSG00000089771.1 ENSMUSG00000089771 ENSMUST00000161939 Gm16311 antisense Interval_45151 chr13 52765506 52766466 + 0 NA Intergenic Intergenic -8781 ENSMUSG00000113737.1 ENSMUSG00000113737 ENSMUST00000223209 BB123696 lincRNA Interval_158459 chr8 83837997 83839286 + 0 NA Intergenic Intergenic -62094 ENSMUSG00000013033.16 ENSMUSG00000013033 ENSMUST00000131018 Adgrl1 protein_coding Interval_88820 chr2 11441329 11442172 + 0 NA Intergenic Intergenic 21526 ENSMUSG00000082314.2 ENSMUSG00000082314 ENSMUST00000117854 Gm13296 processed_pseudogene Interval_131946 chr5 140981770 140982210 + 0 NA intron (ENSMUSG00000036526.8, intron 1 of 2) protein_coding-intron (ENSMUSG00000036526.8, intron 1 of 24) 18481 ENSMUSG00000036526.8 ENSMUSG00000036526 ENSMUST00000199091 Card11 protein_coding Interval_88266 chr2 3099724 3100498 + 0 NA Intergenic Intergenic -18271 ENSMUSG00000050530.14 ENSMUSG00000050530 ENSMUST00000062934 Fam171a1 protein_coding Interval_38985 chr12 84288487 84288893 + 0 NA intron (ENSMUSG00000072946.12, intron 1 of 9) protein_coding-intron (ENSMUSG00000072946.12, intron 1 of 9) 3291 ENSMUSG00000072946.12 ENSMUSG00000072946 ENSMUST00000123693 Ptgr2 protein_coding Interval_139758 chr6 108439598 108440290 + 0 NA intron (ENSMUSG00000030102.11, intron 3 of 3) protein_coding-intron (ENSMUSG00000030102.11, intron 43 of 61) -16239 ENSMUSG00000098674.1 ENSMUSG00000098674 ENSMUST00000184343 Gm27813 misc_RNA Interval_48 GL456212.1 77692 78072 + 0 NA NA NA NA NA Interval_149970 chr7 103921107 103921540 + 0 NA Intergenic Intergenic -7502 ENSMUSG00000042219.6 ENSMUSG00000042219 ENSMUST00000106863 Olfr631 protein_coding Interval_37995 chr12 73693257 73693769 + 0 NA intron (ENSMUSG00000021108.18, intron 5 of 14) protein_coding-intron (ENSMUSG00000021108.18, intron 4 of 13) -99970 ENSMUSG00000113321.1 ENSMUSG00000113321 ENSMUST00000222997 Gm8075 lincRNA Interval_147676 chr7 71733362 71733619 + 0 NA Intergenic Intergenic 15653 ENSMUSG00000108982.1 ENSMUSG00000108982 ENSMUST00000208796 Gm17988 processed_pseudogene Interval_79875 chr18 35686596 35686800 + 0 NA promoter-TSS (ENSMUSG00000024350.6) protein_coding-promoter-TSS (ENSMUSG00000024350.6) -16527 ENSMUSG00000073598.3 ENSMUSG00000073598 ENSMUST00000097617 1700066B19Rik protein_coding Interval_20300 chr10 116735457 116735934 + 0 NA intron (ENSMUSG00000112924.1, intron 2 of 2) lincRNA-intron (ENSMUSG00000112924.1, intron 2 of 2) 6442 ENSMUSG00000112924.1 ENSMUSG00000112924 ENSMUST00000218193 4930579P08Rik lincRNA Interval_102257 chr3 20044041 20045237 + 0 NA Intergenic Intergenic -9345 ENSMUSG00000027615.14 ENSMUSG00000027615 ENSMUST00000133094 Hps3 protein_coding Interval_7177 chr1 127490871 127491520 + 0 NA TTS (ENSMUSG00000026347.13) protein_coding-TTS (ENSMUSG00000026347.13) 84419 ENSMUSG00000103390.1 ENSMUSG00000103390 ENSMUST00000195573 Gm38301 TEC Interval_131940 chr5 140934658 140935052 + 0 NA intron (ENSMUSG00000036526.8, intron 1 of 2) protein_coding-intron (ENSMUSG00000036526.8, intron 1 of 24) 65616 ENSMUSG00000036526.8 ENSMUSG00000036526 ENSMUST00000199091 Card11 protein_coding Interval_116788 chr4 117299300 117299538 + 0 NA intron (ENSMUSG00000028677.19, intron 1 of 3) protein_coding-intron (ENSMUSG00000028677.19, intron 4 of 14) 3275 ENSMUSG00000085749.1 ENSMUSG00000085749 ENSMUST00000139618 Gm12843 antisense Interval_141688 chr6 133464863 133465144 + 0 NA Intergenic Intergenic -64219 ENSMUSG00000095412.3 ENSMUSG00000095412 ENSMUST00000203357 Gm5885 transcribed_unprocessed_pseudogene Interval_38067 chr12 75460668 75460852 + 0 NA intron (ENSMUSG00000021051.10, intron 11 of 12) protein_coding-intron (ENSMUSG00000021051.10, intron 12 of 13) -43979 ENSMUSG00000048982.3 ENSMUSG00000048982 ENSMUST00000051079 Gphb5 protein_coding Interval_135867 chr6 48057486 48057760 + 0 NA Intergenic Intergenic 8920 ENSMUSG00000092928.1 ENSMUSG00000092928 ENSMUST00000175187 Gm24563 miRNA Interval_173544 chrX 99078358 99079035 + 0 NA Intergenic Intergenic 3706 ENSMUSG00000083310.2 ENSMUSG00000083310 ENSMUST00000119692 Gm5760 processed_pseudogene Interval_122918 chr5 27342133 27344486 + 0 NA intron (ENSMUSG00000061576.15, intron 1 of 25) protein_coding-intron (ENSMUSG00000061576.15, intron 1 of 25) 125124 ENSMUSG00000106537.1 ENSMUSG00000106537 ENSMUST00000200263 Gm43502 TEC Interval_39013 chr12 84459830 84460436 + 0 NA intron (ENSMUSG00000085793.2, intron 2 of 3) protein_coding-intron (ENSMUSG00000085793.2, intron 4 of 5) -9185 ENSMUSG00000021238.11 ENSMUSG00000021238 ENSMUST00000222656 Aldh6a1 protein_coding Interval_62232 chr15 89040242 89040518 + 0 NA intron (ENSMUSG00000015365.15, intron 22 of 26) protein_coding-intron (ENSMUSG00000015365.15, intron 22 of 26) -19367 ENSMUSG00000058441.7 ENSMUSG00000058441 ENSMUST00000159960 Panx2 protein_coding Interval_11114 chr1 179463907 179464967 + 0 NA intron (ENSMUSG00000055067.15, intron 1 of 11) protein_coding-intron (ENSMUSG00000055067.15, intron 1 of 5) 53568 ENSMUSG00000055067.15 ENSMUSG00000055067 ENSMUST00000194237 Smyd3 protein_coding Interval_117045 chr4 119204521 119205440 + 0 NA TTS (ENSMUSG00000028642.7) protein_coding-TTS (ENSMUSG00000028642.7) 9072 ENSMUSG00000028643.11 ENSMUSG00000028643 ENSMUST00000210595 Svbp protein_coding Interval_24625 chr11 35391995 35392201 + 0 NA intron (ENSMUSG00000056427.10, intron 2 of 3) protein_coding-intron (ENSMUSG00000056427.10, intron 4 of 35) 42029 ENSMUSG00000086311.1 ENSMUSG00000086311 ENSMUST00000124503 Gm12122 sense_intronic Interval_101338 chr2 180559989 180560410 + 0 NA Intergenic Intergenic -21105 ENSMUSG00000027569.15 ENSMUSG00000027569 ENSMUST00000149969 Mrgbp protein_coding Interval_174128 chrX 135925795 135926518 + 0 NA Intergenic Intergenic -62391 ENSMUSG00000083223.1 ENSMUSG00000083223 ENSMUST00000117300 Gm15016 processed_pseudogene Interval_158558 chr8 84459371 84460934 + 0 NA intron (ENSMUSG00000034656.18, intron 3 of 48) protein_coding-intron (ENSMUSG00000034656.18, intron 1 of 46) -79571 ENSMUSG00000064392.1 ENSMUSG00000064392 ENSMUST00000082458 Gm23626 snoRNA Interval_87905 chr19 57026613 57026890 + 0 NA Intergenic Intergenic -89513 ENSMUSG00000025083.18 ENSMUSG00000025083 ENSMUST00000132851 Afap1l2 protein_coding Interval_142365 chr6 141019023 141019543 + 0 NA intron (ENSMUSG00000107638.2, intron 2 of 3) lincRNA-intron (ENSMUSG00000107638.2, intron 2 of 3) -10998 ENSMUSG00000107613.1 ENSMUSG00000107613 ENSMUST00000204599 Gm43927 processed_pseudogene Interval_30395 chr11 94121044 94122110 + 0 NA intron (ENSMUSG00000020859.16, intron 20 of 20) protein_coding-intron (ENSMUSG00000020859.16, intron 26 of 26) -11925 ENSMUSG00000086003.7 ENSMUSG00000086003 ENSMUST00000125406 B230206L02Rik processed_transcript Interval_128063 chr5 110602300 110602678 + 0 NA intron (ENSMUSG00000033316.14, intron 5 of 10) protein_coding-intron (ENSMUSG00000033316.14, intron 5 of 10) -1032 ENSMUSG00000033316.14 ENSMUSG00000033316 ENSMUST00000165856 Galnt9 protein_coding Interval_93070 chr2 69921691 69921939 + 0 NA intron (ENSMUSG00000044308.17, intron 3 of 7) protein_coding-intron (ENSMUSG00000044308.17, intron 3 of 38) 36087 ENSMUSG00000085735.1 ENSMUSG00000085735 ENSMUST00000129114 Mettl5os antisense Interval_40963 chr12 110287663 110288332 + 0 NA Intergenic Intergenic 8929 ENSMUSG00000075707.5 ENSMUSG00000075707 ENSMUST00000097228 Dio3 protein_coding Interval_140949 chr6 122951813 122952127 + 0 NA promoter-TSS (ENSMUSG00000043832.13) protein_coding-promoter-TSS (ENSMUSG00000043832.13) -808 ENSMUSG00000043832.13 ENSMUSG00000043832 ENSMUST00000204427 Clec4a3 protein_coding Interval_60564 chr15 74988379 74989306 + 0 NA promoter-TSS (ENSMUSG00000101132.2) unprocessed_pseudogene-promoter-TSS (ENSMUSG00000101132.2) 92 ENSMUSG00000103457.1 ENSMUSG00000103457 ENSMUST00000193816 Gm37042 TEC Interval_29388 chr11 83581724 83583066 + 0 NA intron (ENSMUSG00000051832.7, intron 1 of 1) processed_transcript-intron (ENSMUSG00000051832.7, intron 1 of 8) -5253 ENSMUSG00000019122.8 ENSMUSG00000019122 ENSMUST00000136131 Ccl9 protein_coding Interval_129979 chr5 123443977 123444600 + 0 NA intron (ENSMUSG00000038342.15, intron 7 of 8) protein_coding-intron (ENSMUSG00000038342.15, intron 7 of 16) -7170 ENSMUSG00000038342.15 ENSMUSG00000038342 ENSMUST00000199458 Mlxip protein_coding Interval_112901 chr4 45896594 45897323 + 0 NA intron (ENSMUSG00000035539.14, intron 4 of 37) protein_coding-intron (ENSMUSG00000035539.14, intron 4 of 12) 6655 ENSMUSG00000035539.14 ENSMUSG00000035539 ENSMUST00000151024 Ccdc180 protein_coding Interval_72574 chr17 30746051 30746867 + 0 NA intron (ENSMUSG00000033826.10, intron 47 of 90) protein_coding-intron (ENSMUSG00000033826.10, intron 49 of 92) 35670 ENSMUSG00000094785.1 ENSMUSG00000094785 ENSMUST00000083205 Gm24661 snRNA Interval_122661 chr5 24529678 24530616 + 0 NA Intergenic Intergenic -2945 ENSMUSG00000067724.5 ENSMUSG00000067724 ENSMUST00000088311 Gbx1 protein_coding Interval_116098 chr4 107652694 107653356 + 0 NA Intergenic Intergenic 30555 ENSMUSG00000028610.16 ENSMUSG00000028610 ENSMUST00000131508 Dmrtb1 protein_coding Interval_150215 chr7 108190537 108191526 + 0 NA Intergenic Intergenic -12114 ENSMUSG00000108916.1 ENSMUSG00000108916 ENSMUST00000207672 Gm18944 processed_pseudogene Interval_86560 chr19 41689890 41690506 + 0 NA intron (ENSMUSG00000025020.11, intron 3 of 11) protein_coding-intron (ENSMUSG00000025020.11, intron 4 of 36) 53288 ENSMUSG00000025020.11 ENSMUSG00000025020 ENSMUST00000171586 Slit1 protein_coding Interval_83533 chr18 88913803 88914117 + 0 NA TTS (ENSMUSG00000118089.1) processed_pseudogene-TTS (ENSMUSG00000118089.1) 1281 ENSMUSG00000118089.1 ENSMUSG00000118089 ENSMUST00000236358 Gm50406 processed_pseudogene Interval_35089 chr12 17238211 17239016 + 0 NA Intergenic Intergenic 5001 ENSMUSG00000113368.1 ENSMUSG00000113368 ENSMUST00000223362 Gm10054 processed_pseudogene Interval_65339 chr16 21679541 21679979 + 0 NA intron (ENSMUSG00000043391.10, intron 2 of 2) protein_coding-intron (ENSMUSG00000043391.10, intron 1 of 1) 14820 ENSMUSG00000043391.10 ENSMUSG00000043391 ENSMUST00000232634 2510009E07Rik protein_coding Interval_104316 chr3 63294920 63296294 + 0 NA promoter-TSS (ENSMUSG00000027820.12) protein_coding-promoter-TSS (ENSMUSG00000027820.12) 341 ENSMUSG00000027820.12 ENSMUSG00000027820 ENSMUST00000193805 Mme protein_coding Interval_65781 chr16 28818569 28819628 + 0 NA Intergenic Intergenic 17269 ENSMUSG00000051065.9 ENSMUSG00000051065 ENSMUST00000232571 Mb21d2 protein_coding Interval_109096 chr3 135712494 135712956 + 0 NA Intergenic Intergenic -58159 ENSMUSG00000106149.1 ENSMUSG00000106149 ENSMUST00000196513 Gm43430 TEC Interval_7931 chr1 134634155 134634493 + 0 NA exon (ENSMUSG00000042207.17, exon 27 of 27) protein_coding-exon (ENSMUSG00000042207.17, exon 27 of 27) 11524 ENSMUSG00000042207.17 ENSMUSG00000042207 ENSMUST00000191572 Kdm5b protein_coding Interval_121363 chr4 155274304 155275746 + 0 NA intron (ENSMUSG00000029053.16, intron 7 of 14) protein_coding-intron (ENSMUSG00000029053.16, intron 10 of 17) 25059 ENSMUSG00000073684.13 ENSMUSG00000073684 ENSMUST00000156404 Faap20 protein_coding Interval_120180 chr4 143211687 143213374 + 0 NA intron (ENSMUSG00000057637.13, intron 1 of 3) protein_coding-intron (ENSMUSG00000057637.13, intron 1 of 9) 465 ENSMUSG00000057637.13 ENSMUSG00000057637 ENSMUST00000156909 Prdm2 protein_coding Interval_160949 chr8 116096837 116097024 + 0 NA Intergenic Intergenic 90439 ENSMUSG00000110476.1 ENSMUSG00000110476 ENSMUST00000212419 4930422C21Rik lincRNA Interval_40631 chr12 106124727 106124931 + 0 NA Intergenic Intergenic 20571 ENSMUSG00000114149.1 ENSMUSG00000114149 ENSMUST00000223462 Gm47646 lincRNA Interval_114404 chr4 75277583 75278647 + 0 NA exon (ENSMUSG00000028398.8, exon 1 of 2) protein_coding-exon (ENSMUSG00000028398.8, exon 1 of 2) 190 ENSMUSG00000028398.8 ENSMUSG00000028398 ENSMUST00000030103 Dmac1 protein_coding Interval_16441 chr10 62883737 62887665 + 0 NA intron (ENSMUSG00000047146.17, intron 2 of 2) protein_coding-intron (ENSMUSG00000047146.17, intron 1 of 12) 1811 ENSMUSG00000047146.17 ENSMUSG00000047146 ENSMUST00000218782 Tet1 protein_coding Interval_54908 chr14 76150443 76153561 + 0 NA Intergenic Intergenic 41111 ENSMUSG00000022009.1 ENSMUSG00000022009 ENSMUST00000022586 Nufip1 protein_coding Interval_131653 chr5 139084933 139085513 + 0 NA intron (ENSMUSG00000025855.13, intron 3 of 6) protein_coding-intron (ENSMUSG00000025855.13, intron 4 of 10) 64778 ENSMUSG00000025855.13 ENSMUSG00000025855 ENSMUST00000130180 Prkar1b protein_coding Interval_10775 chr1 174592950 174593151 + 0 NA intron (ENSMUSG00000028354.13, intron 3 of 17) protein_coding-intron (ENSMUSG00000028354.13, intron 3 of 17) -16759 ENSMUSG00000028354.13 ENSMUSG00000028354 ENSMUST00000193905 Fmn2 protein_coding Interval_146379 chr7 45598979 45599722 + 0 NA intron (ENSMUSG00000109632.1, intron 2 of 2) lincRNA-intron (ENSMUSG00000109632.1, intron 2 of 2) 2210 ENSMUSG00000109632.1 ENSMUSG00000109632 ENSMUST00000209936 Gm31479 lincRNA Interval_116588 chr4 115911300 115912051 + 0 NA Intergenic Intergenic 21009 ENSMUSG00000034185.9 ENSMUSG00000034185 ENSMUST00000165938 6430628N08Rik protein_coding Interval_115185 chr4 93781017 93781724 + 0 NA Intergenic Intergenic -20963 ENSMUSG00000073797.5 ENSMUSG00000073797 ENSMUST00000121966 Gm12650 processed_pseudogene Interval_16780 chr10 68114683 68115850 + 0 NA intron (ENSMUSG00000019947.10, intron 8 of 9) protein_coding-intron (ENSMUSG00000019947.10, intron 9 of 10) -88640 ENSMUSG00000086838.1 ENSMUSG00000086838 ENSMUST00000143555 Gm16212 antisense Interval_23420 chr11 22511806 22513155 + 0 NA exon (ENSMUSG00000049904.7, exon 1 of 4) protein_coding-exon (ENSMUSG00000049904.7, exon 1 of 4) 392 ENSMUSG00000049904.7 ENSMUSG00000049904 ENSMUST00000059319 Tmem17 protein_coding Interval_36095 chr12 35592303 35593449 + 0 NA Intergenic Intergenic -9668 ENSMUSG00000113548.1 ENSMUSG00000113548 ENSMUST00000223547 Gm34047 lincRNA Interval_68146 chr16 65696087 65696345 + 0 NA Intergenic Intergenic -82797 ENSMUSG00000116578.1 ENSMUSG00000116578 ENSMUST00000232570 Gm49633 processed_pseudogene Interval_145133 chr7 30210992 30212159 + 0 NA Intergenic Intergenic 1163 ENSMUSG00000109142.1 ENSMUSG00000109142 ENSMUST00000208540 Gm44600 processed_pseudogene Interval_41978 chr13 5841854 5842135 + 0 NA Intergenic Intergenic 15567 ENSMUSG00000100625.7 ENSMUSG00000100625 ENSMUST00000223142 1700016G22Rik lincRNA Interval_102246 chr3 19906365 19906730 + 0 NA Intergenic Intergenic -7249 ENSMUSG00000103781.1 ENSMUSG00000103781 ENSMUST00000194901 Gm37523 processed_pseudogene Interval_112045 chr4 33470830 33471035 + 0 NA intron (ENSMUSG00000028274.17, intron 14 of 15) protein_coding-intron (ENSMUSG00000028274.17, intron 14 of 15) -18043 ENSMUSG00000081206.1 ENSMUSG00000081206 ENSMUST00000118608 Gm11935 processed_pseudogene Interval_34159 chr11 120982852 120983166 + 0 NA exon (ENSMUSG00000025162.18, exon 2 of 2) protein_coding-exon (ENSMUSG00000025162.18, exon 2 of 2) 8321 ENSMUSG00000025162.18 ENSMUSG00000025162 ENSMUST00000155070 Csnk1d protein_coding Interval_143619 chr7 13268837 13269623 + 0 NA exon (ENSMUSG00000070814.15, exon 3 of 3) protein_coding-exon (ENSMUSG00000070814.15, exon 3 of 3) 9206 ENSMUSG00000070814.15 ENSMUSG00000070814 ENSMUST00000144470 Zswim9 protein_coding Interval_130346 chr5 126337657 126338316 + 0 NA Intergenic Intergenic 51668 ENSMUSG00000094875.1 ENSMUSG00000094875 ENSMUST00000178061 Gm23151 snRNA Interval_59509 chr15 54786819 54787568 + 0 NA Intergenic Intergenic -21680 ENSMUSG00000098237.1 ENSMUSG00000098237 ENSMUST00000182543 Gm7577 processed_pseudogene Interval_158893 chr8 87781004 87781474 + 0 NA exon (ENSMUSG00000045333.15, exon 3 of 7) protein_coding-exon (ENSMUSG00000045333.15, exon 3 of 7) 144582 ENSMUSG00000089301.1 ENSMUSG00000089301 ENSMUST00000158676 Gm24841 misc_RNA Interval_33841 chr11 118918947 118919388 + 0 NA Intergenic Intergenic -51947 ENSMUSG00000084887.1 ENSMUSG00000084887 ENSMUST00000127327 Gm11749 sense_intronic Interval_7807 chr1 133841585 133843048 + 0 NA Intergenic Intergenic 7127 ENSMUSG00000100830.1 ENSMUSG00000100830 ENSMUST00000190927 Gm28441 lincRNA Interval_140294 chr6 116207447 116208849 + 0 NA promoter-TSS (ENSMUSG00000024104.11) protein_coding-promoter-TSS (ENSMUSG00000024104.11) -155 ENSMUSG00000108030.1 ENSMUSG00000108030 ENSMUST00000203332 9530062K07Rik bidirectional_promoter_lncRNA Interval_75990 chr17 74211752 74212913 + 0 NA exon (ENSMUSG00000117262.1, exon 1 of 1) processed_pseudogene-exon (ENSMUSG00000117262.1, exon 1 of 1) 374 ENSMUSG00000117262.1 ENSMUSG00000117262 ENSMUST00000233585 Gm9316 processed_pseudogene Interval_47718 chr13 91723050 91724199 + 0 NA TTS (ENSMUSG00000077278.1) snoRNA-TTS (ENSMUSG00000077278.1) 368 ENSMUSG00000077278.1 ENSMUSG00000077278 ENSMUST00000104090 Gm22778 snoRNA Interval_90228 chr2 29142037 29143136 + 0 NA intron (ENSMUSG00000043535.13, intron 7 of 25) protein_coding-intron (ENSMUSG00000043535.13, intron 7 of 25) 16700 ENSMUSG00000043535.13 ENSMUSG00000043535 ENSMUST00000145422 Setx protein_coding Interval_152711 chr7 136754865 136755067 + 0 NA Intergenic Intergenic -44362 ENSMUSG00000110101.1 ENSMUSG00000110101 ENSMUST00000211142 Gm6249 lincRNA Interval_101293 chr2 180212193 180212964 + 0 NA intron (ENSMUSG00000015647.9, intron 2 of 78) protein_coding-intron (ENSMUSG00000015647.9, intron 2 of 78) -32755 ENSMUSG00000098735.1 ENSMUSG00000098735 ENSMUST00000185089 Mir7005 miRNA Interval_42941 chr13 21701127 21702151 + 0 NA intron (ENSMUSG00000108674.2, intron 1 of 1) protein_coding-intron (ENSMUSG00000108674.2, intron 1 of 1) 3528 ENSMUSG00000108674.2 ENSMUSG00000108674 ENSMUST00000077843 Olfr1359 protein_coding Interval_48796 chr13 103356714 103356981 + 0 NA exon (ENSMUSG00000047643.5, exon 1 of 1) processed_pseudogene-exon (ENSMUSG00000047643.5, exon 1 of 1) 595 ENSMUSG00000047643.5 ENSMUSG00000047643 ENSMUST00000052030 Gm5454 processed_pseudogene Interval_151199 chr7 119504571 119504844 + 0 NA intron (ENSMUSG00000030968.3, intron 3 of 11) protein_coding-intron (ENSMUSG00000030968.3, intron 3 of 11) -5922 ENSMUSG00000030968.3 ENSMUSG00000030968 ENSMUST00000208275 Pdilt protein_coding Interval_77092 chr17 86464819 86465141 + 0 NA intron (ENSMUSG00000045038.14, intron 2 of 14) protein_coding-intron (ENSMUSG00000045038.14, intron 3 of 15) -25582 ENSMUSG00000045038.14 ENSMUSG00000045038 ENSMUST00000136986 Prkce protein_coding Interval_134352 chr6 26244283 26244484 + 0 NA Intergenic Intergenic 216047 ENSMUSG00000088387.1 ENSMUSG00000088387 ENSMUST00000157762 Gm24691 snRNA Interval_105654 chr3 88393766 88395146 + 0 NA TTS (ENSMUSG00000028066.15) protein_coding-TTS (ENSMUSG00000028066.15) 5254 ENSMUSG00000028066.15 ENSMUSG00000028066 ENSMUST00000191622 Pmf1 protein_coding Interval_165420 chr9 47702955 47703913 + 0 NA intron (ENSMUSG00000032076.20, intron 1 of 8) protein_coding-intron (ENSMUSG00000032076.20, intron 1 of 8) -67707 ENSMUSG00000110959.1 ENSMUSG00000110959 ENSMUST00000214736 Gm47198 TEC Interval_171041 chr9 113915941 113916781 + 0 NA intron (ENSMUSG00000033392.16, intron 34 of 34) protein_coding-intron (ENSMUSG00000033392.16, intron 32 of 32) -15268 ENSMUSG00000009741.15 ENSMUSG00000009741 ENSMUST00000216293 Ubp1 protein_coding Interval_66483 chr16 34170055 34170888 + 0 NA intron (ENSMUSG00000061751.16, intron 30 of 30) protein_coding-intron (ENSMUSG00000061751.16, intron 33 of 59) -74443 ENSMUSG00000061751.16 ENSMUSG00000061751 ENSMUST00000132569 Kalrn protein_coding Interval_172628 chrX 38555485 38555752 + 0 NA intron (ENSMUSG00000031095.15, intron 2 of 18) protein_coding-intron (ENSMUSG00000031095.15, intron 2 of 19) 9044 ENSMUSG00000031095.15 ENSMUSG00000031095 ENSMUST00000050083 Cul4b protein_coding Interval_168158 chr9 77610978 77611202 + 0 NA Intergenic Intergenic -25410 ENSMUSG00000044938.8 ENSMUSG00000044938 ENSMUST00000057781 Klhl31 protein_coding Interval_126111 chr5 77468387 77469271 + 0 NA TTS (ENSMUSG00000107232.1) lincRNA-TTS (ENSMUSG00000107232.1) 3341 ENSMUSG00000107232.1 ENSMUSG00000107232 ENSMUST00000201654 1700017L05Rik lincRNA Interval_6390 chr1 106795960 106797193 + 0 NA promoter-TSS (ENSMUSG00000009907.17) protein_coding-promoter-TSS (ENSMUSG00000009907.17) -15952 ENSMUSG00000009907.17 ENSMUSG00000009907 ENSMUST00000126057 Vps4b protein_coding Interval_27936 chr11 70982436 70983461 + 0 NA promoter-TSS (ENSMUSG00000018446.8) protein_coding-promoter-TSS (ENSMUSG00000018446.8) 59 ENSMUSG00000018446.8 ENSMUSG00000018446 ENSMUST00000179291 C1qbp protein_coding Interval_17635 chr10 78390687 78392493 + 0 NA Intergenic Intergenic -1730 ENSMUSG00000064317.5 ENSMUSG00000064317 ENSMUST00000072739 Gm10146 processed_pseudogene Interval_96035 chr2 119324681 119327310 + 0 NA promoter-TSS (ENSMUSG00000074912.10) processed_transcript-promoter-TSS (ENSMUSG00000074912.10) 199 ENSMUSG00000074912.10 ENSMUSG00000074912 ENSMUST00000124439 Gm14207 processed_transcript Interval_95535 chr2 111736517 111736747 + 0 NA Intergenic Intergenic -3473 ENSMUSG00000084134.1 ENSMUSG00000084134 ENSMUST00000118569 Gm13930 processed_pseudogene Interval_79196 chr18 25582901 25584505 + 0 NA intron (ENSMUSG00000024268.16, intron 2 of 5) protein_coding-intron (ENSMUSG00000024268.16, intron 2 of 12) -13787 ENSMUSG00000114306.1 ENSMUSG00000114306 ENSMUST00000223994 Gm3227 antisense Interval_60664 chr15 76015050 76015849 + 0 NA intron (ENSMUSG00000102018.8, intron 3 of 13) protein_coding-intron (ENSMUSG00000102018.8, intron 2 of 4) -2068 ENSMUSG00000046761.13 ENSMUSG00000046761 ENSMUST00000060807 Fam83h protein_coding Interval_57654 chr15 13431356 13431670 + 0 NA Intergenic Intergenic -12657 ENSMUSG00000115347.1 ENSMUSG00000115347 ENSMUST00000227992 Gm8238 processed_pseudogene Interval_15606 chr10 52272704 52274580 + 0 NA intron (ENSMUSG00000019891.15, intron 2 of 2) protein_coding-intron (ENSMUSG00000019891.15, intron 2 of 10) 40005 ENSMUSG00000019891.15 ENSMUSG00000019891 ENSMUST00000218582 Dcbld1 protein_coding Interval_160689 chr8 111607092 111607414 + 0 NA TTS (ENSMUSG00000033545.14) protein_coding-intron (ENSMUSG00000033545.14, intron 2 of 5) 21334 ENSMUSG00000031958.16 ENSMUSG00000031958 ENSMUST00000070004 Ldhd protein_coding Interval_37131 chr12 58781917 58782259 + 0 NA Intergenic Intergenic 18182 ENSMUSG00000112487.1 ENSMUSG00000112487 ENSMUST00000219517 Gm18873 processed_pseudogene Interval_68459 chr16 77099127 77099443 + 0 NA intron (ENSMUSG00000022867.11, intron 19 of 25) protein_coding-intron (ENSMUSG00000022867.11, intron 18 of 23) 85579 ENSMUSG00000022867.11 ENSMUSG00000022867 ENSMUST00000232351 Usp25 protein_coding Interval_88467 chr2 5372254 5373476 + 0 NA intron (ENSMUSG00000039145.16, intron 3 of 10) protein_coding-intron (ENSMUSG00000039145.16, intron 3 of 10) 89215 ENSMUSG00000080820.1 ENSMUSG00000080820 ENSMUST00000117204 Gm13197 processed_pseudogene Interval_108373 chr3 126343344 126343727 + 0 NA Intergenic Intergenic -20149 ENSMUSG00000046561.9 ENSMUSG00000046561 ENSMUST00000093976 Arsj protein_coding Interval_108440 chr3 127220414 127221131 + 0 NA intron (ENSMUSG00000032826.19, intron 1 of 31) protein_coding-intron (ENSMUSG00000032826.19, intron 3 of 14) 23003 ENSMUSG00000105733.1 ENSMUSG00000105733 ENSMUST00000197913 Gm42973 TEC Interval_55335 chr14 83405966 83406299 + 0 NA TTS (ENSMUSG00000088009.1) snoRNA-TTS (ENSMUSG00000088009.1) 501 ENSMUSG00000088009.1 ENSMUSG00000088009 ENSMUST00000157384 Gm24774 snoRNA Interval_35548 chr12 24680495 24682026 + 0 NA promoter-TSS (ENSMUSG00000062563.15) protein_coding-promoter-TSS (ENSMUSG00000062563.15) 535 ENSMUSG00000062563.15 ENSMUSG00000062563 ENSMUST00000172771 Cys1 protein_coding Interval_8704 chr1 149172955 149173656 + 0 NA exon (ENSMUSG00000101457.1, exon 1 of 1) processed_pseudogene-exon (ENSMUSG00000101457.1, exon 1 of 1) 245 ENSMUSG00000101457.1 ENSMUSG00000101457 ENSMUST00000188281 Gm18701 processed_pseudogene Interval_169003 chr9 90135473 90136027 + 0 NA Intergenic Intergenic 16813 ENSMUSG00000096647.2 ENSMUSG00000096647 ENSMUST00000178436 Tmem41b-ps processed_pseudogene Interval_62545 chr15 94552832 94555012 + 0 NA exon (ENSMUSG00000059883.16, exon 4 of 12) protein_coding-exon (ENSMUSG00000059883.16, exon 4 of 12) 10269 ENSMUSG00000059883.16 ENSMUSG00000059883 ENSMUST00000109248 Irak4 protein_coding Interval_117182 chr4 120299378 120299847 + 0 NA intron (ENSMUSG00000084929.1, intron 1 of 1) antisense-intron (ENSMUSG00000084929.1, intron 1 of 1) 8262 ENSMUSG00000084929.1 ENSMUSG00000084929 ENSMUST00000152384 Foxo6os antisense Interval_4420 chr1 74043404 74043888 + 0 NA intron (ENSMUSG00000055322.16, intron 3 of 32) protein_coding-intron (ENSMUSG00000055322.16, intron 3 of 34) 55030 ENSMUSG00000055322.16 ENSMUSG00000055322 ENSMUST00000190599 Tns1 protein_coding Interval_120933 chr4 151742728 151743852 + 0 NA intron (ENSMUSG00000014592.21, intron 2 of 7) protein_coding-intron (ENSMUSG00000014592.21, intron 3 of 23) 118414 ENSMUSG00000014592.21 ENSMUSG00000014592 ENSMUST00000135780 Camta1 protein_coding Interval_116221 chr4 108813893 108814190 + 0 NA TTS (ENSMUSG00000028568.16) protein_coding-TTS (ENSMUSG00000028568.16) 16510 ENSMUSG00000028568.16 ENSMUSG00000028568 ENSMUST00000139464 Btf3l4 protein_coding Interval_144901 chr7 28831535 28832545 + 0 NA TTS (ENSMUSG00000053898.12) protein_coding-TTS (ENSMUSG00000053898.12) -1814 ENSMUSG00000053964.17 ENSMUSG00000053964 ENSMUST00000137468 Lgals4 protein_coding Interval_131434 chr5 137172299 137172887 + 0 NA TTS (ENSMUSG00000106466.1) lincRNA-TTS (ENSMUSG00000106466.1) 4450 ENSMUSG00000118522.1 ENSMUSG00000118522 ENSMUST00000239135 CAAA01077340.1 protein_coding Interval_27411 chr11 67454626 67456105 + 0 NA exon (ENSMUSG00000033066.16, exon 1 of 14) protein_coding-exon (ENSMUSG00000033066.16, exon 1 of 14) 90580 ENSMUSG00000060180.12 ENSMUSG00000060180 ENSMUST00000181027 Myh13 protein_coding Interval_16168 chr10 61199498 61200083 + 0 NA intron (ENSMUSG00000059901.12, intron 21 of 21) protein_coding-intron (ENSMUSG00000059901.12, intron 21 of 21) 24528 ENSMUSG00000020096.21 ENSMUSG00000020096 ENSMUST00000126831 Tbata protein_coding Interval_169871 chr9 102659753 102660648 + 0 NA Intergenic Intergenic 31688 ENSMUSG00000035048.13 ENSMUSG00000035048 ENSMUST00000190354 Anapc13 protein_coding Interval_27548 chr11 68610397 68611020 + 0 NA Intergenic Intergenic 23687 ENSMUSG00000045915.15 ENSMUSG00000045915 ENSMUST00000102612 Ccdc42 protein_coding Interval_71450 chr17 23821427 23824036 + 0 NA promoter-TSS (ENSMUSG00000092981.1) miRNA-promoter-TSS (ENSMUSG00000092981.1) -560 ENSMUSG00000092981.1 ENSMUSG00000092981 ENSMUST00000175240 Mir5125 miRNA Interval_11889 chr1 186762714 186764389 + 0 NA Intergenic Intergenic 14155 ENSMUSG00000097784.1 ENSMUSG00000097784 ENSMUST00000180869 A430105J06Rik lincRNA Interval_2442 chr1 39372345 39375004 + 0 NA exon (ENSMUSG00000003134.10, exon 19 of 19) protein_coding-exon (ENSMUSG00000003134.10, exon 19 of 19) 5525 ENSMUSG00000073702.11 ENSMUSG00000073702 ENSMUST00000191855 Rpl31 protein_coding Interval_131622 chr5 138868097 138868266 + 0 NA Intergenic Intergenic 48101 ENSMUSG00000094504.3 ENSMUSG00000094504 ENSMUST00000179205 Gm5294 protein_coding Interval_27650 chr11 69280604 69280773 + 0 NA Intergenic Intergenic -13463 ENSMUSG00000087003.1 ENSMUSG00000087003 ENSMUST00000132834 Cntrobos antisense Interval_155276 chr8 30099608 30100776 + 0 NA Intergenic Intergenic -18232 ENSMUSG00000109597.1 ENSMUSG00000109597 ENSMUST00000211611 Gm45492 processed_pseudogene Interval_58322 chr15 32362763 32363105 + 0 NA intron (ENSMUSG00000022231.10, intron 2 of 7) protein_coding-intron (ENSMUSG00000022231.10, intron 2 of 22) 118109 ENSMUSG00000022231.10 ENSMUSG00000022231 ENSMUST00000227429 Sema5a protein_coding Interval_83802 chr19 4779218 4779526 + 0 NA intron (ENSMUSG00000096370.8, intron 2 of 2) protein_coding-intron (ENSMUSG00000096370.8, intron 2 of 2) -14201 ENSMUSG00000103651.1 ENSMUSG00000103651 ENSMUST00000195512 Gm37206 TEC Interval_115938 chr4 106428746 106429366 + 0 NA intron (ENSMUSG00000028514.15, intron 62 of 67) protein_coding-intron (ENSMUSG00000028514.15, intron 62 of 67) 35273 ENSMUSG00000044254.6 ENSMUSG00000044254 ENSMUST00000049507 Pcsk9 protein_coding Interval_133821 chr6 12799526 12800066 + 0 NA Intergenic Intergenic -50543 ENSMUSG00000032625.14 ENSMUSG00000032625 ENSMUST00000119443 Thsd7a protein_coding Interval_110642 chr4 5666286 5666481 + 0 NA intron (ENSMUSG00000049119.14, intron 1 of 1) protein_coding-intron (ENSMUSG00000049119.14, intron 1 of 2) 21419 ENSMUSG00000077392.1 ENSMUSG00000077392 ENSMUST00000104204 Gm24337 snoRNA Interval_26878 chr11 61242498 61242955 + 0 NA intron (ENSMUSG00000010025.19, intron 9 of 9) protein_coding-intron (ENSMUSG00000010025.19, intron 9 of 9) 8284 ENSMUSG00000010025.19 ENSMUSG00000010025 ENSMUST00000149298 Aldh3a2 protein_coding Interval_157205 chr8 67782310 67782682 + 0 NA intron (ENSMUSG00000030465.19, intron 11 of 16) protein_coding-intron (ENSMUSG00000030465.19, intron 9 of 14) -153390 ENSMUSG00000104757.1 ENSMUSG00000104757 ENSMUST00000198490 Gm44391 miRNA Interval_163880 chr9 27456429 27456984 + 0 NA Intergenic Intergenic 59496 ENSMUSG00000031991.10 ENSMUSG00000031991 ENSMUST00000215326 Spata19 protein_coding Interval_75668 chr17 70429658 70430645 + 0 NA intron (ENSMUSG00000003279.17, intron 1 of 11) protein_coding-intron (ENSMUSG00000003279.17, intron 5 of 14) 325431 ENSMUSG00000097282.1 ENSMUSG00000097282 ENSMUST00000181546 5031415H12Rik antisense Interval_47422 chr13 83812208 83812872 + 0 NA intron (ENSMUSG00000050334.12, intron 1 of 2) lincRNA-intron (ENSMUSG00000050334.12, intron 3 of 3) -19800 ENSMUSG00000114687.1 ENSMUSG00000114687 ENSMUST00000225105 Gm5452 processed_pseudogene Interval_38565 chr12 80160242 80160753 + 0 NA Intergenic Intergenic -27901 ENSMUSG00000097729.2 ENSMUSG00000097729 ENSMUST00000180643 2310015A10Rik processed_transcript Interval_174681 chrX 162867281 162867784 + 0 NA intron (ENSMUSG00000031357.3, intron 5 of 8) protein_coding-intron (ENSMUSG00000031357.3, intron 5 of 8) -4060 ENSMUSG00000031357.3 ENSMUSG00000031357 ENSMUST00000134629 Syap1 protein_coding Interval_2068 chr1 36227240 36227658 + 0 NA intron (ENSMUSG00000037470.14, intron 4 of 18) protein_coding-intron (ENSMUSG00000037470.14, intron 4 of 40) 17271 ENSMUSG00000037470.14 ENSMUSG00000037470 ENSMUST00000192159 Uggt1 protein_coding Interval_38626 chr12 80642769 80644693 + 0 NA promoter-TSS (ENSMUSG00000048833.9) protein_coding-promoter-TSS (ENSMUSG00000048833.9) -152 ENSMUSG00000048833.9 ENSMUSG00000048833 ENSMUST00000217679 Slc39a9 protein_coding Interval_145942 chr7 42504489 42506220 + 0 NA intron (ENSMUSG00000092416.2, intron 1 of 5) protein_coding-intron (ENSMUSG00000092416.2, intron 1 of 5) 3980 ENSMUSG00000108491.1 ENSMUSG00000108491 ENSMUST00000205616 Gm44523 processed_pseudogene Interval_10817 chr1 175598326 175598542 + 0 NA Intergenic Intergenic 11279 ENSMUSG00000026526.14 ENSMUSG00000026526 ENSMUST00000154956 Fh1 protein_coding Interval_113958 chr4 61821739 61822123 + 0 NA Intergenic Intergenic 13302 ENSMUSG00000058523.2 ENSMUSG00000058523 ENSMUST00000082287 Mup5 protein_coding Interval_74646 chr17 54270206 54270403 + 0 NA Intergenic Intergenic 28152 ENSMUSG00000023945.7 ENSMUSG00000023945 ENSMUST00000233758 Slc5a7 protein_coding Interval_128450 chr5 113375745 113376591 + 0 NA Intergenic Intergenic 18874 ENSMUSG00000053873.1 ENSMUSG00000053873 ENSMUST00000066573 Aym1 protein_coding Interval_45777 chr13 58010728 58012697 + 0 NA intron (ENSMUSG00000014164.15, intron 12 of 14) protein_coding-intron (ENSMUSG00000014164.15, intron 14 of 16) 11488 ENSMUSG00000077962.1 ENSMUSG00000077962 ENSMUST00000104769 Mir874 miRNA Interval_128611 chr5 114296176 114297373 + 0 NA intron (ENSMUSG00000066952.11, intron 1 of 31) protein_coding-intron (ENSMUSG00000066952.11, intron 1 of 31) -18167 ENSMUSG00000066952.11 ENSMUSG00000066952 ENSMUST00000125230 Myo1h protein_coding Interval_164187 chr9 32344011 32345192 + 0 NA promoter-TSS (ENSMUSG00000032034.6) protein_coding-promoter-TSS (ENSMUSG00000032034.6) -364 ENSMUSG00000032034.6 ENSMUSG00000032034 ENSMUST00000214223 Kcnj5 protein_coding Interval_48191 chr13 97084314 97084763 + 0 NA intron (ENSMUSG00000041817.14, intron 1 of 12) protein_coding-intron (ENSMUSG00000041817.14, intron 1 of 12) 14699 ENSMUSG00000057762.6 ENSMUSG00000057762 ENSMUST00000071118 Gm6169 protein_coding Interval_130842 chr5 131211720 131212206 + 0 NA intron (ENSMUSG00000034040.16, intron 1 of 1) protein_coding-intron (ENSMUSG00000034040.16, intron 1 of 10) -77252 ENSMUSG00000106710.1 ENSMUSG00000106710 ENSMUST00000202871 Gm43166 sense_intronic Interval_57844 chr15 22995908 22996242 + 0 NA intron (ENSMUSG00000040420.15, intron 1 of 6) protein_coding-intron (ENSMUSG00000040420.15, intron 1 of 6) 60588 ENSMUSG00000091194.1 ENSMUSG00000091194 ENSMUST00000169624 Gm19840 processed_pseudogene Interval_171790 chr9 121162345 121163355 + 0 NA intron (ENSMUSG00000040936.15, intron 22 of 36) protein_coding-intron (ENSMUSG00000040936.15, intron 22 of 33) -79492 ENSMUSG00000084706.1 ENSMUSG00000084706 ENSMUST00000122757 Gm22987 misc_RNA Interval_160281 chr8 107669541 107670259 + 0 NA Intergenic Intergenic 20944 ENSMUSG00000110508.1 ENSMUSG00000110508 ENSMUST00000212585 Gm8940 processed_pseudogene Interval_72781 chr17 32130215 32131083 + 0 NA intron (ENSMUSG00000097305.2, intron 2 of 2) protein_coding-intron (ENSMUSG00000038146.8, intron 31 of 32) 3116 ENSMUSG00000038146.8 ENSMUSG00000038146 ENSMUST00000235816 Notch3 protein_coding Interval_40112 chr12 101584794 101585042 + 0 NA intron (ENSMUSG00000047014.7, intron 17 of 25) protein_coding-intron (ENSMUSG00000047014.7, intron 18 of 26) 30839 ENSMUSG00000077058.1 ENSMUSG00000077058 ENSMUST00000103870 Gm24542 miRNA Interval_151340 chr7 121219814 121220030 + 0 NA Intergenic Intergenic 4072 ENSMUSG00000108502.1 ENSMUSG00000108502 ENSMUST00000206527 Gm9240 processed_pseudogene Interval_65937 chr16 30380748 30381192 + 0 NA intron (ENSMUSG00000022533.14, intron 3 of 4) protein_coding-intron (ENSMUSG00000022533.14, intron 2 of 32) -47122 ENSMUSG00000022533.14 ENSMUSG00000022533 ENSMUST00000136065 Atp13a3 protein_coding Interval_84389 chr19 10555036 10556318 + 0 NA promoter-TSS (ENSMUSG00000024667.12) protein_coding-promoter-TSS (ENSMUSG00000024667.12) 59 ENSMUSG00000024667.12 ENSMUSG00000024667 ENSMUST00000131205 Tmem216 protein_coding Interval_153934 chr8 11311981 11313891 + 0 NA promoter-TSS (ENSMUSG00000031502.11) protein_coding-promoter-TSS (ENSMUSG00000031502.11) -247 ENSMUSG00000031502.11 ENSMUSG00000031502 ENSMUST00000209000 Col4a1 protein_coding Interval_18391 chr10 85501967 85503053 + 0 NA intron (ENSMUSG00000020042.15, intron 1 of 16) protein_coding-intron (ENSMUSG00000020042.15, intron 1 of 9) -142693 ENSMUSG00000020042.15 ENSMUSG00000020042 ENSMUST00000145433 Btbd11 protein_coding Interval_81818 chr18 64984779 64984987 + 0 NA intron (ENSMUSG00000117895.1, intron 2 of 2) protein_coding-intron (ENSMUSG00000024589.18, intron 1 of 29) 16292 ENSMUSG00000117895.1 ENSMUSG00000117895 ENSMUST00000237218 Gm50368 antisense Interval_167053 chr9 64918402 64919174 + 0 NA exon (ENSMUSG00000053641.9, exon 34 of 34) protein_coding-exon (ENSMUSG00000053641.9, exon 34 of 34) 6305 ENSMUSG00000053641.9 ENSMUSG00000053641 ENSMUST00000217307 Dennd4a protein_coding Interval_160399 chr8 108946424 108948583 + 0 NA exon (ENSMUSG00000038872.10, exon 9 of 10) protein_coding-exon (ENSMUSG00000038872.10, exon 9 of 10) 10643 ENSMUSG00000093241.1 ENSMUSG00000093241 ENSMUST00000175500 Mir3108 miRNA Interval_75141 chr17 63894653 63895469 + 0 NA promoter-TSS (ENSMUSG00000000127.15) protein_coding-promoter-TSS (ENSMUSG00000000127.15) -31270 ENSMUSG00000045506.3 ENSMUSG00000045506 ENSMUST00000050753 A930002H24Rik protein_coding Interval_80166 chr18 37984054 37984750 + 0 NA promoter-TSS (ENSMUSG00000024451.9) protein_coding-promoter-TSS (ENSMUSG00000024451.9) 6543 ENSMUSG00000098297.1 ENSMUSG00000098297 ENSMUST00000185063 Mir6980 miRNA Interval_75963 chr17 73896926 73897143 + 0 NA exon (ENSMUSG00000024066.9, exon 30 of 36) protein_coding-exon (ENSMUSG00000024066.9, exon 30 of 36) 21876 ENSMUSG00000024066.9 ENSMUSG00000024066 ENSMUST00000232957 Xdh protein_coding Interval_37802 chr12 72069802 72071386 + 0 NA exon (ENSMUSG00000043398.5, exon 1 of 1) protein_coding-exon (ENSMUSG00000043398.5, exon 1 of 1) 531 ENSMUSG00000043398.5 ENSMUSG00000043398 ENSMUST00000050649 Gpr135 protein_coding Interval_155740 chr8 36602726 36604319 + 0 NA intron (ENSMUSG00000031523.16, intron 5 of 17) protein_coding-intron (ENSMUSG00000031523.16, intron 1 of 13) 114331 ENSMUSG00000039620.17 ENSMUSG00000039620 ENSMUST00000125492 Trmt9b protein_coding Interval_171421 chr9 118168555 118169050 + 0 NA intron (ENSMUSG00000097402.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000097402.1, intron 1 of 1) 18571 ENSMUSG00000097402.1 ENSMUSG00000097402 ENSMUST00000181824 Gm17399 lincRNA Interval_61330 chr15 80896705 80898613 + 0 NA intron (ENSMUSG00000047888.10, intron 6 of 16) protein_coding-intron (ENSMUSG00000047888.10, intron 14 of 24) -25405 ENSMUSG00000047888.10 ENSMUSG00000047888 ENSMUST00000228525 Tnrc6b protein_coding Interval_21690 chr11 3726295 3727034 + 0 NA intron (ENSMUSG00000020435.17, intron 2 of 2) protein_coding-intron (ENSMUSG00000020435.17, intron 2 of 13) -28338 ENSMUSG00000083015.1 ENSMUSG00000083015 ENSMUST00000117960 Gm16518 processed_pseudogene Interval_161808 chr8 122937696 122938175 + 0 NA intron (ENSMUSG00000035569.17, intron 2 of 2) protein_coding-intron (ENSMUSG00000035569.17, intron 2 of 12) 45008 ENSMUSG00000065915.1 ENSMUSG00000065915 ENSMUST00000083981 Gm24445 snRNA Interval_79686 chr18 34529233 34530352 + 0 NA Intergenic Intergenic -12521 ENSMUSG00000012282.2 ENSMUSG00000012282 ENSMUST00000012426 Wnt8a protein_coding Interval_52986 chr14 52737783 52738035 + 0 NA Intergenic Intergenic -6340 ENSMUSG00000096746.3 ENSMUSG00000096746 ENSMUST00000179789 Trav7d-3 TR_V_gene Interval_95338 chr2 106750511 106751406 + 0 NA intron (ENSMUSG00000016386.15, intron 2 of 2) protein_coding-intron (ENSMUSG00000016386.15, intron 3 of 6) 55738 ENSMUSG00000016386.15 ENSMUSG00000016386 ENSMUST00000133401 Mpped2 protein_coding Interval_115049 chr4 88867461 88868979 + 0 NA exon (ENSMUSG00000054351.2, exon 1 of 1) lincRNA-exon (ENSMUSG00000054351.2, exon 1 of 1) 160 ENSMUSG00000054351.2 ENSMUSG00000054351 ENSMUST00000057837 4930553M12Rik lincRNA Interval_68714 chr16 84923013 84923254 + 0 NA Intergenic Intergenic -29301 ENSMUSG00000116668.1 ENSMUSG00000116668 ENSMUST00000231785 Gm49568 processed_pseudogene Interval_152833 chr7 138494484 138494723 + 0 NA Intergenic Intergenic -59639 ENSMUSG00000110037.1 ENSMUSG00000110037 ENSMUST00000209503 4930543N07Rik lincRNA Interval_87081 chr19 46014436 46015086 + 0 NA Intergenic Intergenic 11253 ENSMUSG00000074811.3 ENSMUSG00000074811 ENSMUST00000099393 Hps6 protein_coding Interval_21993 chr11 5633692 5635924 + 0 NA TTS (ENSMUSG00000081021.1) processed_pseudogene-TTS (ENSMUSG00000081021.1) 669 ENSMUSG00000081021.1 ENSMUSG00000081021 ENSMUST00000120982 Gm11964 processed_pseudogene Interval_93658 chr2 75645156 75645786 + 0 NA Intergenic Intergenic -12089 ENSMUSG00000082152.1 ENSMUSG00000082152 ENSMUST00000119695 Gm13655 processed_pseudogene Interval_36954 chr12 55570763 55571005 + 0 NA Intergenic Intergenic 5645 ENSMUSG00000063129.1 ENSMUSG00000063129 ENSMUST00000080123 Aldoart2 protein_coding Interval_153073 chr7 141178017 141178364 + 0 NA exon (ENSMUSG00000110275.1, exon 1 of 1) processed_pseudogene-exon (ENSMUSG00000110275.1, exon 1 of 1) 274 ENSMUSG00000110275.1 ENSMUSG00000110275 ENSMUST00000211731 Gm5905 processed_pseudogene Interval_85919 chr19 33178525 33179808 + 0 NA intron (ENSMUSG00000071573.14, intron 3 of 4) polymorphic_pseudogene-intron (ENSMUSG00000071573.14, intron 5 of 6) 22054 ENSMUSG00000106278.1 ENSMUSG00000106278 ENSMUST00000199287 Mir3970 miRNA Interval_8619 chr1 144109041 144109517 + 0 NA Intergenic Intergenic 67996 ENSMUSG00000051079.8 ENSMUSG00000051079 ENSMUST00000111941 Rgs13 protein_coding Interval_168287 chr9 78435327 78435537 + 0 NA intron (ENSMUSG00000032344.17, intron 3 of 4) protein_coding-intron (ENSMUSG00000032344.17, intron 3 of 4) 6987 ENSMUSG00000087052.1 ENSMUSG00000087052 ENSMUST00000144982 Gm8093 transcribed_processed_pseudogene Interval_143284 chr7 4950294 4951477 + 0 NA intron (ENSMUSG00000030433.15, intron 3 of 3) protein_coding-intron (ENSMUSG00000030433.15, intron 3 of 3) 13521 ENSMUSG00000030433.15 ENSMUSG00000030433 ENSMUST00000182837 Sbk2 protein_coding Interval_108612 chr3 129557530 129559007 + 0 NA intron (ENSMUSG00000041220.10, intron 1 of 2) protein_coding-intron (ENSMUSG00000041220.10, intron 2 of 4) 20127 ENSMUSG00000106092.1 ENSMUSG00000106092 ENSMUST00000200283 Gm43072 TEC Interval_124853 chr5 56889738 56890082 + 0 NA Intergenic Intergenic 153820 ENSMUSG00000088734.1 ENSMUSG00000088734 ENSMUST00000158109 Gm23896 snoRNA Interval_35684 chr12 27431485 27432373 + 0 NA Intergenic Intergenic -89355 ENSMUSG00000063632.6 ENSMUSG00000063632 ENSMUST00000079063 Sox11 protein_coding Interval_35125 chr12 17444288 17444556 + 0 NA intron (ENSMUSG00000113246.1, intron 2 of 2) lincRNA-intron (ENSMUSG00000113246.1, intron 2 of 2) 7804 ENSMUSG00000113246.1 ENSMUSG00000113246 ENSMUST00000220527 Gm36752 lincRNA Interval_169938 chr9 103088315 103089286 + 0 NA exon (ENSMUSG00000032548.14, exon 14 of 14) protein_coding-exon (ENSMUSG00000032548.14, exon 14 of 14) -3274 ENSMUSG00000110765.1 ENSMUSG00000110765 ENSMUST00000216778 Gm47468 antisense Interval_76422 chr17 80095883 80096679 + 0 NA Intergenic Intergenic -8656 ENSMUSG00000088276.1 ENSMUSG00000088276 ENSMUST00000157651 Gm23125 snRNA Interval_10027 chr1 165184947 165185940 + 0 NA intron (ENSMUSG00000040848.11, intron 2 of 6) protein_coding-intron (ENSMUSG00000040848.11, intron 3 of 7) 8874 ENSMUSG00000040848.11 ENSMUSG00000040848 ENSMUST00000192565 Sft2d2 protein_coding Interval_165328 chr9 46327774 46330759 + 0 NA promoter-TSS (ENSMUSG00000097463.2) processed_transcript-promoter-TSS (ENSMUSG00000097463.2) -364 ENSMUSG00000097463.2 ENSMUSG00000097463 ENSMUST00000215349 4930448E22Rik processed_transcript Interval_54453 chr14 69852655 69853458 + 0 NA intron (ENSMUSG00000022085.4, intron 3 of 6) protein_coding-intron (ENSMUSG00000022085.4, intron 3 of 6) 12636 ENSMUSG00000022085.4 ENSMUSG00000022085 ENSMUST00000022678 Pebp4 protein_coding Interval_133182 chr5 150391607 150392099 + 0 NA TTS (ENSMUSG00000056602.12) protein_coding-TTS (ENSMUSG00000056602.12) 50451 ENSMUSG00000118543.1 ENSMUSG00000118543 ENSMUST00000239092 AC154885.1 unprocessed_pseudogene Interval_47220 chr13 78201612 78202069 + 0 NA promoter-TSS (ENSMUSG00000087143.9) antisense-promoter-TSS (ENSMUSG00000087143.9) -947 ENSMUSG00000087143.9 ENSMUSG00000087143 ENSMUST00000183171 A830082K12Rik antisense Interval_111604 chr4 24428221 24428474 + 0 NA Intergenic Intergenic 2543 ENSMUSG00000099150.1 ENSMUSG00000099150 ENSMUST00000183964 Gm27243 lincRNA Interval_147731 chr7 73138392 73141538 + 0 NA Intergenic Intergenic 15514 ENSMUSG00000108345.1 ENSMUSG00000108345 ENSMUST00000205892 4933435G04Rik lincRNA Interval_26190 chr11 54982264 54982924 + 0 NA intron (ENSMUSG00000018340.13, intron 24 of 25) protein_coding-intron (ENSMUSG00000018340.13, intron 23 of 24) -26547 ENSMUSG00000020400.17 ENSMUSG00000020400 ENSMUST00000132776 Tnip1 protein_coding Interval_32963 chr11 113388935 113390113 + 0 NA intron (ENSMUSG00000041654.15, intron 5 of 5) protein_coding-intron (ENSMUSG00000041654.15, intron 6 of 10) -78453 ENSMUSG00000078251.2 ENSMUSG00000078251 ENSMUST00000105048 Gm16487 pseudogene Interval_52661 chr14 48353787 48355089 + 0 NA Intergenic Intergenic 8177 ENSMUSG00000114991.1 ENSMUSG00000114991 ENSMUST00000228144 1700128I11Rik lincRNA Interval_96547 chr2 125584789 125584975 + 0 NA intron (ENSMUSG00000068394.4, intron 18 of 27) protein_coding-intron (ENSMUSG00000068394.4, intron 18 of 27) 40231 ENSMUSG00000068394.4 ENSMUSG00000068394 ENSMUST00000089776 Cep152 protein_coding Interval_134824 chr6 31890989 31891290 + 0 NA intron (ENSMUSG00000087379.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000087379.1, intron 1 of 2) 104464 ENSMUSG00000087379.1 ENSMUSG00000087379 ENSMUST00000153328 Gm13849 lincRNA Interval_57502 chr15 11890820 11891877 + 0 NA promoter-TSS (ENSMUSG00000022206.7) protein_coding-promoter-TSS (ENSMUSG00000022206.7) 14326 ENSMUSG00000022206.7 ENSMUSG00000022206 ENSMUST00000226878 Npr3 protein_coding Interval_1277 chr1 19012728 19012951 + 0 NA Intergenic Intergenic -24427 ENSMUSG00000101644.1 ENSMUSG00000101644 ENSMUST00000185386 Gm28343 processed_pseudogene Interval_134632 chr6 30059847 30060219 + 0 NA intron (ENSMUSG00000058440.14, intron 1 of 2) protein_coding-intron (ENSMUSG00000058440.14, intron 1 of 11) -29862 ENSMUSG00000058440.14 ENSMUSG00000058440 ENSMUST00000132866 Nrf1 protein_coding Interval_60240 chr15 68937301 68937786 + 0 NA intron (ENSMUSG00000022332.8, intron 1 of 4) protein_coding-intron (ENSMUSG00000022332.8, intron 1 of 8) 8846 ENSMUSG00000022332.8 ENSMUSG00000022332 ENSMUST00000230073 Khdrbs3 protein_coding Interval_124815 chr5 55162572 55162809 + 0 NA Intergenic Intergenic 140891 ENSMUSG00000065795.1 ENSMUSG00000065795 ENSMUST00000083861 Gm25513 snRNA Interval_158209 chr8 79794569 79795864 + 0 NA Intergenic Intergenic 8395 ENSMUSG00000110048.1 ENSMUSG00000110048 ENSMUST00000209386 Gm45433 processed_pseudogene Interval_48405 chr13 98832409 98834882 + 0 NA Intergenic Intergenic 16893 ENSMUSG00000114719.1 ENSMUSG00000114719 ENSMUST00000225468 Gm18134 processed_pseudogene Interval_107358 chr3 106556584 106557209 + 0 NA intron (ENSMUSG00000027900.15, intron 4 of 6) protein_coding-intron (ENSMUSG00000027900.15, intron 3 of 6) -3004 ENSMUSG00000106592.1 ENSMUSG00000106592 ENSMUST00000196938 Gm43070 unprocessed_pseudogene Interval_171461 chr9 118496471 118498776 + 0 NA Intergenic Intergenic -8524 ENSMUSG00000110692.1 ENSMUSG00000110692 ENSMUST00000212286 Gm33460 antisense Interval_148440 chr7 81278425 81278620 + 0 NA intron (ENSMUSG00000025584.17, intron 1 of 21) protein_coding-intron (ENSMUSG00000025584.17, intron 1 of 21) -28171 ENSMUSG00000025584.17 ENSMUSG00000025584 ENSMUST00000130494 Pde8a protein_coding Interval_158849 chr8 87225864 87226351 + 0 NA intron (ENSMUSG00000098257.1, intron 2 of 4) lincRNA-intron (ENSMUSG00000098257.1, intron 2 of 4) 23081 ENSMUSG00000098257.1 ENSMUSG00000098257 ENSMUST00000183344 Gm27169 lincRNA Interval_21241 chr10 127414678 127415091 + 0 NA intron (ENSMUSG00000025404.15, intron 3 of 3) protein_coding-intron (ENSMUSG00000025404.15, intron 2 of 25) -10492 ENSMUSG00000089369.1 ENSMUSG00000089369 ENSMUST00000158744 Gm23819 snRNA Interval_45573 chr13 55972523 55972809 + 0 NA intron (ENSMUSG00000114493.2, intron 4 of 5) antisense-intron (ENSMUSG00000114493.2, intron 4 of 5) 57568 ENSMUSG00000114229.1 ENSMUSG00000114229 ENSMUST00000225745 Gm47072 processed_pseudogene Interval_128458 chr5 113430327 113431609 + 0 NA Intergenic Intergenic 73674 ENSMUSG00000053873.1 ENSMUSG00000053873 ENSMUST00000066573 Aym1 protein_coding Interval_133894 chr6 14496073 14496331 + 0 NA Intergenic Intergenic -39052 ENSMUSG00000077334.1 ENSMUSG00000077334 ENSMUST00000104146 Gm23013 snRNA Interval_9339 chr1 156420535 156421654 + 0 NA promoter-TSS (ENSMUSG00000026601.14) protein_coding-promoter-TSS (ENSMUSG00000026601.14) -666 ENSMUSG00000026601.14 ENSMUSG00000026601 ENSMUST00000179744 Axdnd1 protein_coding Interval_37246 chr12 62791754 62792054 + 0 NA Intergenic Intergenic 62159 ENSMUSG00000113590.1 ENSMUSG00000113590 ENSMUST00000223154 Gm48378 processed_pseudogene Interval_46043 chr13 60547637 60548144 + 0 NA Intergenic Intergenic -18481 ENSMUSG00000080666.1 ENSMUSG00000080666 ENSMUST00000117016 Gm25000 miRNA Interval_84733 chr19 16012319 16013269 + 0 NA Intergenic Intergenic -12657 ENSMUSG00000117711.1 ENSMUSG00000117711 ENSMUST00000235413 Rpl37-ps1 processed_pseudogene Interval_116849 chr4 117673344 117675110 + 0 NA TTS (ENSMUSG00000033423.16) protein_coding-TTS (ENSMUSG00000033423.16) 8026 ENSMUSG00000009640.11 ENSMUSG00000009640 ENSMUST00000127750 Dmap1 protein_coding Interval_117604 chr4 124969373 124969668 + 0 NA intron (ENSMUSG00000087011.1, intron 1 of 1) antisense-intron (ENSMUSG00000087011.1, intron 1 of 1) 17489 ENSMUSG00000087011.1 ENSMUSG00000087011 ENSMUST00000146679 Gm12930 antisense Interval_135615 chr6 41604425 41606455 + 0 NA promoter-TSS (ENSMUSG00000029869.7) protein_coding-promoter-TSS (ENSMUSG00000029869.7) -3135 ENSMUSG00000098970.1 ENSMUSG00000098970 ENSMUST00000183508 Gm27549 snRNA Interval_23306 chr11 21287862 21288814 + 0 NA intron (ENSMUSG00000020128.15, intron 1 of 2) protein_coding-intron (ENSMUSG00000020128.15, intron 7 of 22) -7222 ENSMUSG00000084048.1 ENSMUSG00000084048 ENSMUST00000120479 Gm12042 processed_pseudogene Interval_42529 chr13 14612612 14613669 + 0 NA promoter-TSS (ENSMUSG00000015672.4) protein_coding-promoter-TSS (ENSMUSG00000015672.4) -113 ENSMUSG00000015672.4 ENSMUSG00000015672 ENSMUST00000015816 Mrpl32 protein_coding Interval_127351 chr5 103356350 103356791 + 0 NA exon (ENSMUSG00000104684.1, exon 1 of 1) lincRNA-exon (ENSMUSG00000104684.1, exon 1 of 1) 128 ENSMUSG00000104684.1 ENSMUSG00000104684 ENSMUST00000200007 5430427N15Rik lincRNA Interval_128382 chr5 113014665 113016383 + 0 NA promoter-TSS (ENSMUSG00000042249.11) protein_coding-promoter-TSS (ENSMUSG00000042249.11) -10 ENSMUSG00000042249.11 ENSMUSG00000042249 ENSMUST00000197776 Grk3 protein_coding Interval_141963 chr6 136120472 136120792 + 0 NA intron (ENSMUSG00000030209.14, intron 1 of 1) protein_coding-intron (ENSMUSG00000030209.14, intron 2 of 13) -52429 ENSMUSG00000097496.1 ENSMUSG00000097496 ENSMUST00000181537 Gm26653 antisense Interval_60916 chr15 77836035 77836460 + 0 NA intron (ENSMUSG00000022443.17, intron 1 of 2) protein_coding-intron (ENSMUSG00000022443.17, intron 1 of 40) 4509 ENSMUSG00000084497.1 ENSMUSG00000084497 ENSMUST00000122548 Gm22107 snRNA Interval_41494 chr12 115109472 115110405 + 0 NA Intergenic Intergenic 10281 ENSMUSG00000094198.2 ENSMUSG00000094198 ENSMUST00000103521 Ighv1-50 IG_V_gene Interval_126249 chr5 84171266 84172353 + 0 NA intron (ENSMUSG00000029245.16, intron 3 of 13) protein_coding-intron (ENSMUSG00000029245.16, intron 3 of 15) 48496 ENSMUSG00000079067.5 ENSMUSG00000079067 ENSMUST00000120716 Hmgn2-ps1 processed_pseudogene Interval_56521 chr14 119844290 119845753 + 0 NA intron (ENSMUSG00000053465.6, intron 1 of 1) protein_coding-intron (ENSMUSG00000053465.6, intron 1 of 1) 46043 ENSMUSG00000115639.1 ENSMUSG00000115639 ENSMUST00000228885 4930404K13Rik sense_intronic Interval_52930 chr14 52096681 52096905 + 0 NA TTS (ENSMUSG00000060373.15) protein_coding-TTS (ENSMUSG00000060373.15) 7200 ENSMUSG00000060373.15 ENSMUSG00000060373 ENSMUST00000228786 Hnrnpc protein_coding Interval_27312 chr11 66005567 66006012 + 0 NA promoter-TSS (ENSMUSG00000056752.16) protein_coding-promoter-TSS (ENSMUSG00000056752.16) -594 ENSMUSG00000056752.16 ENSMUSG00000056752 ENSMUST00000142836 Dnah9 protein_coding Interval_48510 chr13 99558209 99558765 + 0 NA Intergenic Intergenic -2955 ENSMUSG00000114578.1 ENSMUSG00000114578 ENSMUST00000224215 Gm47158 processed_pseudogene Interval_48129 chr13 96470623 96471316 + 0 NA exon (ENSMUSG00000047117.13, exon 1 of 15) protein_coding-exon (ENSMUSG00000047117.13, exon 1 of 15) 191 ENSMUSG00000047117.13 ENSMUSG00000047117 ENSMUST00000181613 Ankdd1b protein_coding Interval_70425 chr17 10095626 10096382 + 0 NA Intergenic Intergenic 148167 ENSMUSG00000117206.1 ENSMUSG00000117206 ENSMUST00000233132 Gm49809 processed_pseudogene Interval_129928 chr5 123114845 123115369 + 0 NA TTS (ENSMUSG00000054434.14) protein_coding-TTS (ENSMUSG00000054434.14) 4411 ENSMUSG00000104951.1 ENSMUSG00000104951 ENSMUST00000200411 Gm43413 TEC Interval_68530 chr16 78421205 78421635 + 0 NA Intergenic Intergenic 2439 ENSMUSG00000064862.1 ENSMUSG00000064862 ENSMUST00000082928 Gm25038 snoRNA Interval_123465 chr5 32719229 32719623 + 0 NA promoter-TSS (ENSMUSG00000082305.4) transcribed_unprocessed_pseudogene-promoter-TSS (ENSMUSG00000082305.4) -904 ENSMUSG00000082305.4 ENSMUSG00000082305 ENSMUST00000202224 Gm2420 transcribed_unprocessed_pseudogene Interval_11824 chr1 185904380 185905194 + 0 NA Intergenic Intergenic -25902 ENSMUSG00000102546.1 ENSMUSG00000102546 ENSMUST00000194568 Gm9722 processed_pseudogene Interval_107060 chr3 103214538 103216268 + 0 NA Intergenic Intergenic -16428 ENSMUSG00000054379.7 ENSMUSG00000054379 ENSMUST00000090704 2410024N13Rik pseudogene Interval_171371 chr9 117116532 117116835 + 0 NA intron (ENSMUSG00000039607.17, intron 1 of 13) protein_coding-intron (ENSMUSG00000039607.17, intron 1 of 12) 51156 ENSMUSG00000092516.1 ENSMUSG00000092516 ENSMUST00000174520 Gm20397 processed_pseudogene Interval_116135 chr4 108020812 108021418 + 0 NA intron (ENSMUSG00000028600.15, intron 9 of 11) protein_coding-intron (ENSMUSG00000028600.15, intron 9 of 11) 9871 ENSMUSG00000028600.15 ENSMUSG00000028600 ENSMUST00000124265 Podn protein_coding Interval_10551 chr1 171776881 171777284 + 0 NA exon (ENSMUSG00000015316.11, exon 3 of 7) protein_coding-exon (ENSMUSG00000015316.11, exon 3 of 7) 9927 ENSMUSG00000015316.11 ENSMUSG00000015316 ENSMUST00000163992 Slamf1 protein_coding Interval_16006 chr10 60080251 60083104 + 0 NA intron (ENSMUSG00000044475.14, intron 9 of 10) protein_coding-intron (ENSMUSG00000044475.14, intron 9 of 10) -24791 ENSMUSG00000058297.16 ENSMUSG00000058297 ENSMUST00000165024 Spock2 protein_coding Interval_173192 chrX 73990932 73991627 + 0 NA Intergenic Intergenic -15423 ENSMUSG00000080829.1 ENSMUSG00000080829 ENSMUST00000120692 Gm8545 processed_pseudogene Interval_51342 chr14 26557110 26558761 + 0 NA Intergenic Intergenic 5141 ENSMUSG00000107452.1 ENSMUSG00000107452 ENSMUST00000204429 Gm18215 processed_pseudogene Interval_67355 chr16 47375527 47376535 + 0 NA Intergenic Intergenic 130394 ENSMUSG00000087732.1 ENSMUSG00000087732 ENSMUST00000157107 Gm24651 snRNA Interval_52971 chr14 52392692 52393011 + 0 NA intron (ENSMUSG00000063867.2, intron 2 of 2) protein_coding-intron (ENSMUSG00000063867.2, intron 2 of 2) 4528 ENSMUSG00000063867.2 ENSMUSG00000063867 ENSMUST00000078171 Olfr1511 protein_coding Interval_137927 chr6 83421525 83422502 + 0 NA intron (ENSMUSG00000034832.15, intron 2 of 2) protein_coding-intron (ENSMUSG00000034832.15, intron 2 of 3) -1021 ENSMUSG00000108780.1 ENSMUSG00000108780 ENSMUST00000206080 5430434F05Rik TEC Interval_149700 chr7 100767400 100767792 + 0 NA intron (ENSMUSG00000029461.17, intron 2 of 8) protein_coding-intron (ENSMUSG00000029461.17, intron 2 of 8) -5790 ENSMUSG00000097388.1 ENSMUSG00000097388 ENSMUST00000181493 Gm3200 processed_pseudogene Interval_118227 chr4 129631001 129631412 + 0 NA TTS (ENSMUSG00000053841.15) protein_coding-TTS (ENSMUSG00000053841.15) -7362 ENSMUSG00000028795.15 ENSMUSG00000028795 ENSMUST00000152290 Ccdc28b protein_coding Interval_87362 chr19 47951099 47951341 + 0 NA intron (ENSMUSG00000046585.9, intron 5 of 17) protein_coding-intron (ENSMUSG00000046585.9, intron 5 of 17) 13545 ENSMUSG00000046585.9 ENSMUSG00000046585 ENSMUST00000066308 Cfap58 protein_coding Interval_114357 chr4 74251265 74253006 + 0 NA promoter-TSS (ENSMUSG00000085482.1) antisense-promoter-TSS (ENSMUSG00000085482.1) -421 ENSMUSG00000085482.1 ENSMUSG00000085482 ENSMUST00000126646 A230083N12Rik antisense Interval_23026 chr11 19071624 19072086 + 0 NA intron (ENSMUSG00000086025.1, intron 3 of 4) lincRNA-intron (ENSMUSG00000086025.1, intron 3 of 4) 6579 ENSMUSG00000086025.1 ENSMUSG00000086025 ENSMUST00000144854 4933406G16Rik lincRNA Interval_83468 chr18 86269294 86269578 + 0 NA Intergenic Intergenic -25916 ENSMUSG00000118283.1 ENSMUSG00000118283 ENSMUST00000238105 Gm7623 processed_pseudogene Interval_124338 chr5 44178161 44178519 + 0 NA intron (ENSMUSG00000046985.11, intron 12 of 12) protein_coding-intron (ENSMUSG00000046985.11, intron 13 of 13) 38919 ENSMUSG00000105519.1 ENSMUSG00000105519 ENSMUST00000198875 E430021H15Rik TEC Interval_55089 chr14 77897494 77898162 + 0 NA Intergenic Intergenic -6579 ENSMUSG00000022014.15 ENSMUSG00000022014 ENSMUST00000227903 Epsti1 protein_coding Interval_343 chr1 4353262 4353743 + 0 NA intron (ENSMUSG00000025900.13, intron 1 of 3) protein_coding-intron (ENSMUSG00000025900.13, intron 1 of 3) 11327 ENSMUSG00000104123.1 ENSMUSG00000104123 ENSMUST00000194382 Gm37483 TEC Interval_106191 chr3 94477635 94478634 + 0 NA promoter-TSS (ENSMUSG00000028137.9) protein_coding-promoter-TSS (ENSMUSG00000028137.9) -360 ENSMUSG00000028137.9 ENSMUSG00000028137 ENSMUST00000197033 Celf3 protein_coding Interval_133635 chr6 7844058 7845402 + 0 NA promoter-TSS (ENSMUSG00000042460.5) protein_coding-promoter-TSS (ENSMUSG00000042460.5) -112 ENSMUSG00000042460.5 ENSMUSG00000042460 ENSMUST00000040159 C1galt1 protein_coding Interval_158439 chr8 83731704 83732425 + 0 NA intron (ENSMUSG00000002885.14, intron 4 of 19) protein_coding-intron (ENSMUSG00000002885.14, intron 4 of 17) -8080 ENSMUSG00000098465.1 ENSMUSG00000098465 ENSMUST00000184114 Mir1668 miRNA Interval_38592 chr12 80318832 80319469 + 0 NA Intergenic Intergenic 57542 ENSMUSG00000049106.7 ENSMUSG00000049106 ENSMUST00000218498 Dcaf5 protein_coding Interval_10226 chr1 167306230 167306717 + 0 NA Intergenic Intergenic -1905 ENSMUSG00000052428.10 ENSMUSG00000052428 ENSMUST00000193101 Tmco1 protein_coding Interval_33138 chr11 114691449 114693441 + 0 NA intron (ENSMUSG00000034714.9, intron 3 of 13) protein_coding-intron (ENSMUSG00000034714.9, intron 3 of 13) 16929 ENSMUSG00000034714.9 ENSMUSG00000034714 ENSMUST00000141111 Ttyh2 protein_coding Interval_137182 chr6 69355561 69355729 + 0 NA Intergenic Intergenic -7080 ENSMUSG00000105747.1 ENSMUSG00000105747 ENSMUST00000198143 Igkv13-64 IG_V_pseudogene Interval_75419 chr17 66456903 66457916 + 0 NA Intergenic Intergenic 7555 ENSMUSG00000117003.1 ENSMUSG00000117003 ENSMUST00000233518 Gm49937 bidirectional_promoter_lncRNA Interval_76221 chr17 78035578 78035809 + 0 NA Intergenic Intergenic -73315 ENSMUSG00000117352.1 ENSMUSG00000117352 ENSMUST00000234287 Gm50029 processed_pseudogene Interval_20309 chr10 116788945 116789416 + 0 NA intron (ENSMUSG00000034057.8, intron 19 of 24) protein_coding-intron (ENSMUSG00000034057.8, intron 19 of 24) 59927 ENSMUSG00000112924.1 ENSMUSG00000112924 ENSMUST00000218193 4930579P08Rik lincRNA Interval_118756 chr4 133563246 133564070 + 0 NA Intergenic Intergenic -4709 ENSMUSG00000093886.1 ENSMUSG00000093886 ENSMUST00000175076 Gm23158 miRNA Interval_93776 chr2 76801621 76802251 + 0 NA intron (ENSMUSG00000051747.15, intron 191 of 312) protein_coding-intron (ENSMUSG00000051747.15, intron 70 of 190) 34878 ENSMUSG00000051747.15 ENSMUSG00000051747 ENSMUST00000147048 Ttn protein_coding Interval_32558 chr11 108579201 108579423 + 0 NA intron (ENSMUSG00000020728.17, intron 16 of 24) protein_coding-intron (ENSMUSG00000020728.17, intron 19 of 27) -25915 ENSMUSG00000020728.17 ENSMUSG00000020728 ENSMUST00000132978 Cep112 protein_coding Interval_53694 chr14 60925750 60926813 + 0 NA Intergenic Intergenic 111610 ENSMUSG00000060548.13 ENSMUSG00000060548 ENSMUST00000225730 Tnfrsf19 protein_coding Interval_105783 chr3 89314542 89317180 + 0 NA TTS (ENSMUSG00000028039.11) protein_coding-TTS (ENSMUSG00000028039.11) 422 ENSMUSG00000086389.1 ENSMUSG00000086389 ENSMUST00000135144 Gm15998 antisense Interval_126117 chr5 77599852 77600105 + 0 NA Intergenic Intergenic 69868 ENSMUSG00000089415.1 ENSMUSG00000089415 ENSMUST00000158790 Gm22011 snoRNA Interval_123153 chr5 30154564 30155846 + 0 NA promoter-TSS (ENSMUSG00000059447.13) protein_coding-promoter-TSS (ENSMUSG00000059447.13) -98 ENSMUSG00000059447.13 ENSMUSG00000059447 ENSMUST00000141236 Hadhb protein_coding Interval_126078 chr5 77249438 77250615 + 0 NA Intergenic Intergenic -16170 ENSMUSG00000029249.15 ENSMUSG00000029249 ENSMUST00000113449 Rest protein_coding Interval_23401 chr11 22246576 22247324 + 0 NA intron (ENSMUSG00000042302.14, intron 3 of 24) protein_coding-intron (ENSMUSG00000042302.14, intron 2 of 23) 39845 ENSMUSG00000042302.14 ENSMUSG00000042302 ENSMUST00000137594 Ehbp1 protein_coding Interval_147195 chr7 64326761 64328049 + 0 NA intron (ENSMUSG00000030522.14, intron 14 of 16) protein_coding-intron (ENSMUSG00000030522.14, intron 13 of 15) 18559 ENSMUSG00000092187.1 ENSMUSG00000092187 ENSMUST00000173374 Gm20457 antisense Interval_21406 chr10 128399924 128400694 + 0 NA exon (ENSMUSG00000039878.13, exon 1 of 11) protein_coding-exon (ENSMUSG00000039878.13, exon 1 of 11) 901 ENSMUSG00000039878.13 ENSMUSG00000039878 ENSMUST00000219222 Slc39a5 protein_coding Interval_33880 chr11 119172604 119175292 + 0 NA intron (ENSMUSG00000039976.4, intron 3 of 11) protein_coding-intron (ENSMUSG00000039976.4, intron 3 of 11) 10568 ENSMUSG00000085548.1 ENSMUSG00000085548 ENSMUST00000151091 Gm11753 sense_intronic Interval_133586 chr6 7203262 7203499 + 0 NA Intergenic Intergenic 9108 ENSMUSG00000099178.1 ENSMUSG00000099178 ENSMUST00000183839 Gm8669 processed_pseudogene Interval_4141 chr1 70528846 70529066 + 0 NA intron (ENSMUSG00000053153.14, intron 7 of 7) protein_coding-intron (ENSMUSG00000053153.14, intron 16 of 16) 48315 ENSMUSG00000104287.1 ENSMUSG00000104287 ENSMUST00000193176 Gm37456 TEC Interval_27282 chr11 65235391 65235718 + 0 NA intron (ENSMUSG00000020542.18, intron 1 of 3) protein_coding-intron (ENSMUSG00000020542.18, intron 1 of 12) -53397 ENSMUSG00000020542.18 ENSMUSG00000020542 ENSMUST00000150823 Myocd protein_coding Interval_5269 chr1 87127285 87128684 + 0 NA TTS (ENSMUSG00000036500.4) protein_coding-TTS (ENSMUSG00000036500.4) 3011 ENSMUSG00000036500.4 ENSMUSG00000036500 ENSMUST00000044878 Akp3 protein_coding Interval_796 chr1 11413641 11414826 + 0 NA promoter-TSS (ENSMUSG00000057715.13) protein_coding-promoter-TSS (ENSMUSG00000057715.13) -2685 ENSMUSG00000103825.1 ENSMUSG00000103825 ENSMUST00000194502 Gm38178 TEC Interval_16833 chr10 68977840 68978452 + 0 NA Intergenic Intergenic 55742 ENSMUSG00000112331.1 ENSMUSG00000112331 ENSMUST00000219854 Gm33035 lincRNA Interval_115216 chr4 94517801 94518911 + 0 NA intron (ENSMUSG00000028578.8, intron 5 of 5) protein_coding-intron (ENSMUSG00000028578.8, intron 5 of 5) 21324 ENSMUSG00000083359.1 ENSMUSG00000083359 ENSMUST00000118149 Gm12656 processed_pseudogene Interval_139904 chr6 112577310 112577614 + 0 NA Intergenic Intergenic 13820 ENSMUSG00000083443.1 ENSMUSG00000083443 ENSMUST00000120088 Gm15519 processed_pseudogene Interval_91389 chr2 38485060 38487272 + 0 NA Intergenic Intergenic -3938 ENSMUSG00000084124.1 ENSMUSG00000084124 ENSMUST00000120026 Gm13588 processed_pseudogene Interval_70155 chr17 5858345 5859427 + 0 NA intron (ENSMUSG00000002365.10, intron 1 of 17) protein_coding-intron (ENSMUSG00000002365.10, intron 1 of 17) 17534 ENSMUSG00000002365.10 ENSMUSG00000002365 ENSMUST00000231803 Snx9 protein_coding Interval_73345 chr17 36357620 36358062 + 0 NA Intergenic Intergenic 10576 ENSMUSG00000058124.4 ENSMUSG00000058124 ENSMUST00000073546 H2-M10.3 protein_coding Interval_68528 chr16 78411522 78411866 + 0 NA Intergenic Intergenic 12165 ENSMUSG00000064862.1 ENSMUSG00000064862 ENSMUST00000082928 Gm25038 snoRNA Interval_60051 chr15 64249050 64249320 + 0 NA intron (ENSMUSG00000022377.16, intron 2 of 4) protein_coding-intron (ENSMUSG00000022377.16, intron 3 of 30) -65312 ENSMUSG00000115752.1 ENSMUSG00000115752 ENSMUST00000226773 1700010G06Rik antisense Interval_97973 chr2 146290706 146291503 + 0 NA intron (ENSMUSG00000037110.20, intron 39 of 41) protein_coding-intron (ENSMUSG00000037110.20, intron 38 of 40) -14443 ENSMUSG00000042938.8 ENSMUSG00000042938 ENSMUST00000122417 Gm14117 processed_pseudogene Interval_167741 chr9 72431803 72432366 + 0 NA promoter-TSS (ENSMUSG00000099019.1) processed_pseudogene-promoter-TSS (ENSMUSG00000099019.1) -441 ENSMUSG00000099019.1 ENSMUSG00000099019 ENSMUST00000183926 Gm27254 processed_pseudogene Interval_114491 chr4 81167505 81168061 + 0 NA Intergenic Intergenic 170621 ENSMUSG00000077607.1 ENSMUSG00000077607 ENSMUST00000104419 Gm25803 snoRNA Interval_108243 chr3 122914724 122915471 + 0 NA intron (ENSMUSG00000078590.1, intron 3 of 3) protein_coding-intron (ENSMUSG00000078590.1, intron 3 of 3) 4263 ENSMUSG00000078590.1 ENSMUSG00000078590 ENSMUST00000106431 Gm10959 protein_coding Interval_69256 chr16 91721460 91721743 + 0 NA intron (ENSMUSG00000058240.14, intron 1 of 7) protein_coding-intron (ENSMUSG00000058240.14, intron 1 of 12) 6996 ENSMUSG00000058240.14 ENSMUSG00000058240 ENSMUST00000123751 Cryzl1 protein_coding Interval_23332 chr11 21467909 21469101 + 0 NA Intergenic Intergenic -17151 ENSMUSG00000084412.1 ENSMUSG00000084412 ENSMUST00000120335 Gm12044 processed_pseudogene Interval_80234 chr18 38434188 38434554 + 0 NA intron (ENSMUSG00000024425.4, intron 1 of 2) protein_coding-intron (ENSMUSG00000024425.4, intron 1 of 7) -16939 ENSMUSG00000024425.4 ENSMUSG00000024425 ENSMUST00000238135 Ndfip1 protein_coding Interval_150623 chr7 112882248 112884196 + 0 NA intron (ENSMUSG00000055320.18, intron 11 of 13) protein_coding-intron (ENSMUSG00000055320.18, intron 11 of 13) -70740 ENSMUSG00000098132.1 ENSMUSG00000098132 ENSMUST00000182858 Rassf10 protein_coding Interval_122950 chr5 27774190 27774391 + 0 NA intron (ENSMUSG00000002221.11, intron 5 of 5) protein_coding-intron (ENSMUSG00000002221.11, intron 5 of 20) 17401 ENSMUSG00000002221.11 ENSMUSG00000002221 ENSMUST00000199714 Paxip1 protein_coding Interval_95790 chr2 116319384 116319573 + 0 NA Intergenic Intergenic 209012 ENSMUSG00000081787.1 ENSMUSG00000081787 ENSMUST00000120190 Gm13991 processed_pseudogene Interval_26746 chr11 60186361 60186627 + 0 NA exon (ENSMUSG00000062115.15, exon 3 of 6) protein_coding-exon (ENSMUSG00000062115.15, exon 3 of 6) 14123 ENSMUSG00000098547.1 ENSMUSG00000098547 ENSMUST00000183719 Mir6921 miRNA Interval_135970 chr6 49164724 49166875 + 0 NA intron (ENSMUSG00000029814.10, intron 3 of 9) protein_coding-intron (ENSMUSG00000029814.10, intron 3 of 14) -6960 ENSMUSG00000107727.1 ENSMUSG00000107727 ENSMUST00000203553 Gm18010 processed_pseudogene Interval_145897 chr7 41538427 41538726 + 0 NA Intergenic Intergenic 35086 ENSMUSG00000090744.7 ENSMUSG00000090744 ENSMUST00000171059 Gm6871 protein_coding Interval_91216 chr2 36004164 36004706 + 0 NA Intergenic Intergenic 44971 ENSMUSG00000026895.7 ENSMUSG00000026895 ENSMUST00000070112 Ndufa8 protein_coding Interval_101931 chr3 12188562 12189015 + 0 NA Intergenic Intergenic 195821 ENSMUSG00000103339.1 ENSMUSG00000103339 ENSMUST00000191859 Gm37996 processed_pseudogene Interval_5109 chr1 85724343 85724925 + 0 NA intron (ENSMUSG00000052760.16, intron 3 of 5) protein_coding-intron (ENSMUSG00000052760.16, intron 3 of 5) 11947 ENSMUSG00000052760.16 ENSMUSG00000052760 ENSMUST00000159325 A630001G21Rik protein_coding Interval_124347 chr5 44275518 44276081 + 0 NA Intergenic Intergenic -49182 ENSMUSG00000046985.11 ENSMUSG00000046985 ENSMUST00000196151 Tapt1 protein_coding Interval_32625 chr11 109244367 109245448 + 0 NA intron (ENSMUSG00000020599.13, intron 2 of 3) protein_coding-intron (ENSMUSG00000020599.13, intron 13 of 18) 2058 ENSMUSG00000020599.13 ENSMUSG00000020599 ENSMUST00000106704 Rgs9 protein_coding Interval_34147 chr11 120907647 120907852 + 0 NA intron (ENSMUSG00000048445.6, intron 3 of 18) protein_coding-intron (ENSMUSG00000048445.6, intron 3 of 18) -34078 ENSMUSG00000048445.6 ENSMUSG00000048445 ENSMUST00000143895 Ccdc57 protein_coding Interval_48246 chr13 97408824 97409679 + 0 NA Intergenic Intergenic 33017 ENSMUSG00000114425.1 ENSMUSG00000114425 ENSMUST00000223964 Gm33447 lincRNA Interval_33891 chr11 119214560 119215489 + 0 NA intron (ENSMUSG00000039976.4, intron 1 of 11) protein_coding-intron (ENSMUSG00000039976.4, intron 1 of 11) -5136 ENSMUSG00000087404.1 ENSMUSG00000087404 ENSMUST00000143291 Gm11752 lincRNA Interval_96864 chr2 129093210 129094863 + 0 NA exon (ENSMUSG00000027394.13, exon 7 of 7) protein_coding-exon (ENSMUSG00000027394.13, exon 7 of 7) -27675 ENSMUSG00000027395.15 ENSMUSG00000027395 ENSMUST00000147727 Polr1b protein_coding Interval_20366 chr10 117134000 117134543 + 0 NA intron (ENSMUSG00000020170.4, intron 1 of 5) protein_coding-intron (ENSMUSG00000020170.4, intron 1 of 9) 14224 ENSMUSG00000020170.4 ENSMUSG00000020170 ENSMUST00000219104 Frs2 protein_coding Interval_47061 chr13 74989139 74989443 + 0 NA Intergenic Intergenic -121527 ENSMUSG00000021587.5 ENSMUSG00000021587 ENSMUST00000222727 Pcsk1 protein_coding Interval_21388 chr10 128313093 128313953 + 0 NA exon (ENSMUSG00000005682.9, exon 10 of 25) protein_coding-exon (ENSMUSG00000005682.9, exon 10 of 25) -8991 ENSMUSG00000025381.3 ENSMUSG00000025381 ENSMUST00000219199 Cnpy2 protein_coding Interval_8261 chr1 136781511 136782538 + 0 NA Intergenic Intergenic 7496 ENSMUSG00000104360.1 ENSMUSG00000104360 ENSMUST00000193486 Gm8762 processed_pseudogene Interval_86485 chr19 41006484 41007198 + 0 NA Intergenic Intergenic -12306 ENSMUSG00000061132.13 ENSMUSG00000061132 ENSMUST00000134568 Blnk protein_coding Interval_12495 chr1 194380250 194380596 + 0 NA Intergenic Intergenic -157664 ENSMUSG00000103692.1 ENSMUSG00000103692 ENSMUST00000193395 4930503O07Rik lincRNA Interval_72870 chr17 32818006 32818601 + 0 NA exon (ENSMUSG00000095253.4, exon 3 of 3) protein_coding-exon (ENSMUSG00000095253.4, exon 3 of 3) 8159 ENSMUSG00000097030.1 ENSMUSG00000097030 ENSMUST00000181318 Gm26693 antisense Interval_139774 chr6 108593434 108594264 + 0 NA TTS (ENSMUSG00000102192.1) TEC-TTS (ENSMUSG00000102192.1) 1836 ENSMUSG00000102192.1 ENSMUSG00000102192 ENSMUST00000195704 Gm38167 TEC Interval_47646 chr13 90697226 90698063 + 0 NA Intergenic Intergenic -62468 ENSMUSG00000106360.1 ENSMUSG00000106360 ENSMUST00000198614 Gm44338 miRNA Interval_14705 chr10 39197867 39198734 + 0 NA promoter-TSS (ENSMUSG00000111877.1) processed_pseudogene-promoter-TSS (ENSMUSG00000111877.1) -238 ENSMUSG00000111877.1 ENSMUSG00000111877 ENSMUST00000217098 Gm6477 processed_pseudogene Interval_49495 chr13 112427590 112428253 + 0 NA Intergenic Intergenic -1581 ENSMUSG00000114869.1 ENSMUSG00000114869 ENSMUST00000224307 Gm48876 lincRNA Interval_169710 chr9 100553729 100553982 + 0 NA promoter-TSS (ENSMUSG00000070287.3) protein_coding-promoter-TSS (ENSMUSG00000070287.3) -940 ENSMUSG00000070287.3 ENSMUSG00000070287 ENSMUST00000189478 Slc35g2 protein_coding Interval_136157 chr6 51560023 51560529 + 0 NA intron (ENSMUSG00000038301.15, intron 1 of 6) protein_coding-intron (ENSMUSG00000038301.15, intron 1 of 6) 15753 ENSMUSG00000038301.15 ENSMUSG00000038301 ENSMUST00000149024 Snx10 protein_coding Interval_80088 chr18 37443932 37444827 + 0 NA exon (ENSMUSG00000047307.2, exon 1 of 1) protein_coding-exon (ENSMUSG00000047307.2, exon 1 of 1) 1879 ENSMUSG00000047307.2 ENSMUSG00000047307 ENSMUST00000056915 Pcdhb13 protein_coding Interval_99794 chr2 164949897 164951074 + 0 NA promoter-TSS (ENSMUSG00000017737.2) protein_coding-promoter-TSS (ENSMUSG00000017737.2) -3901 ENSMUSG00000017737.2 ENSMUSG00000017737 ENSMUST00000144917 Mmp9 protein_coding Interval_46528 chr13 66861379 66862467 + 0 NA Intergenic Intergenic -2601 ENSMUSG00000071294.2 ENSMUSG00000071294 ENSMUST00000091531 Cbx3-ps4 processed_pseudogene Interval_49641 chr13 113734055 113734340 + 0 NA Intergenic Intergenic 27931 ENSMUSG00000114962.1 ENSMUSG00000114962 ENSMUST00000225360 Gm6343 processed_pseudogene Interval_103856 chr3 53723105 53723619 + 0 NA Intergenic Intergenic -2115 ENSMUSG00000105168.1 ENSMUSG00000105168 ENSMUST00000199488 Gm30735 lincRNA Interval_136152 chr6 51535081 51536119 + 0 NA intron (ENSMUSG00000038301.15, intron 1 of 6) protein_coding-intron (ENSMUSG00000038301.15, intron 1 of 6) -8923 ENSMUSG00000038301.15 ENSMUSG00000038301 ENSMUST00000149024 Snx10 protein_coding Interval_97087 chr2 131144468 131145395 + 0 NA exon (ENSMUSG00000074793.10, exon 13 of 13) protein_coding-exon (ENSMUSG00000074793.10, exon 13 of 13) 11434 ENSMUSG00000079039.1 ENSMUSG00000079039 ENSMUST00000110225 Gm11037 protein_coding Interval_65345 chr16 21714210 21715441 + 0 NA Intergenic Intergenic -20245 ENSMUSG00000043391.10 ENSMUSG00000043391 ENSMUST00000232634 2510009E07Rik protein_coding Interval_134639 chr6 30092985 30093245 + 0 NA intron (ENSMUSG00000058440.14, intron 4 of 4) protein_coding-intron (ENSMUSG00000058440.14, intron 1 of 9) 3220 ENSMUSG00000058440.14 ENSMUSG00000058440 ENSMUST00000132866 Nrf1 protein_coding Interval_9525 chr1 158510806 158511104 + 0 NA exon (ENSMUSG00000026587.15, exon 7 of 23) protein_coding-exon (ENSMUSG00000026587.15, exon 7 of 23) 5330 ENSMUSG00000070103.2 ENSMUSG00000070103 ENSMUST00000093595 Mir488 miRNA Interval_81580 chr18 61803491 61803929 + 0 NA intron (ENSMUSG00000032735.15, intron 23 of 23) protein_coding-intron (ENSMUSG00000032735.15, intron 22 of 22) -17099 ENSMUSG00000033032.15 ENSMUSG00000033032 ENSMUST00000147278 Afap1l1 protein_coding Interval_102749 chr3 30765597 30766654 + 0 NA TTS (ENSMUSG00000051860.13) protein_coding-TTS (ENSMUSG00000051860.13) 9903 ENSMUSG00000051860.13 ENSMUSG00000051860 ENSMUST00000192872 Samd7 protein_coding Interval_55900 chr14 101908357 101908663 + 0 NA intron (ENSMUSG00000033060.16, intron 9 of 10) protein_coding-intron (ENSMUSG00000033060.16, intron 15 of 30) 68003 ENSMUSG00000033060.16 ENSMUSG00000033060 ENSMUST00000160038 Lmo7 protein_coding Interval_108265 chr3 123122463 123122895 + 0 NA intron (ENSMUSG00000050315.14, intron 1 of 3) protein_coding-intron (ENSMUSG00000050315.14, intron 1 of 4) -19609 ENSMUSG00000106012.1 ENSMUSG00000106012 ENSMUST00000196387 Gm43744 processed_pseudogene Interval_156760 chr8 58159833 58160585 + 0 NA intron (ENSMUSG00000096914.3, intron 5 of 12) protein_coding-intron (ENSMUSG00000096914.3, intron 5 of 12) -86378 ENSMUSG00000109963.1 ENSMUSG00000109963 ENSMUST00000211516 Gm45635 TEC Interval_27917 chr11 70835286 70835990 + 0 NA Intergenic Intergenic -9154 ENSMUSG00000020817.16 ENSMUSG00000020817 ENSMUST00000178245 Rabep1 protein_coding Interval_48272 chr13 97578533 97580857 + 0 NA intron (ENSMUSG00000110235.1, intron 2 of 2) lincRNA-intron (ENSMUSG00000110235.1, intron 2 of 2) 19669 ENSMUSG00000110235.1 ENSMUSG00000110235 ENSMUST00000210897 Gm5086 lincRNA Interval_132198 chr5 143292756 143293866 + 0 NA promoter-TSS (ENSMUSG00000093910.2) protein_coding-promoter-TSS (ENSMUSG00000093910.2) 312 ENSMUSG00000093910.2 ENSMUSG00000093910 ENSMUST00000180336 Zfp853 protein_coding Interval_153677 chr8 4481346 4483096 + 0 NA Intergenic Intergenic -10805 ENSMUSG00000008206.16 ENSMUSG00000008206 ENSMUST00000176130 Cers4 protein_coding Interval_7990 chr1 135084734 135086748 + 0 NA intron (ENSMUSG00000042793.13, intron 1 of 17) protein_coding-intron (ENSMUSG00000042793.13, intron 1 of 17) -23220 ENSMUSG00000097988.1 ENSMUSG00000097988 ENSMUST00000182275 Gm10535 antisense Interval_82640 chr18 75565081 75565339 + 0 NA intron (ENSMUSG00000052928.9, intron 6 of 11) protein_coding-intron (ENSMUSG00000052928.9, intron 6 of 11) 50565 ENSMUSG00000097712.1 ENSMUSG00000097712 ENSMUST00000181913 Gm10532 antisense Interval_140865 chr6 122456449 122456650 + 0 NA promoter-TSS (ENSMUSG00000055093.10) processed_pseudogene-promoter-TSS (ENSMUSG00000055093.10) -355 ENSMUSG00000055093.10 ENSMUSG00000055093 ENSMUST00000119780 Gm8430 processed_pseudogene Interval_127041 chr5 99884023 99884274 + 0 NA Intergenic Intergenic 13900 ENSMUSG00000084445.1 ENSMUSG00000084445 ENSMUST00000122496 Gm26252 snoRNA Interval_116226 chr4 108854127 108855302 + 0 NA intron (ENSMUSG00000028567.8, intron 3 of 6) protein_coding-intron (ENSMUSG00000028567.8, intron 3 of 6) -2778 ENSMUSG00000028567.8 ENSMUSG00000028567 ENSMUST00000154017 Txndc12 protein_coding Interval_118778 chr4 133656023 133657182 + 0 NA Intergenic Intergenic 2600 ENSMUSG00000093031.2 ENSMUSG00000093031 ENSMUST00000175290 Gm22662 misc_RNA Interval_138201 chr6 86194013 86196161 + 0 NA promoter-TSS (ENSMUSG00000029999.14) protein_coding-promoter-TSS (ENSMUSG00000029999.14) -16507 ENSMUSG00000029999.14 ENSMUSG00000029999 ENSMUST00000194449 Tgfa protein_coding Interval_2571 chr1 40579869 40580586 + 0 NA promoter-TSS (ENSMUSG00000026065.8) protein_coding-promoter-TSS (ENSMUSG00000026065.8) 421 ENSMUSG00000104441.1 ENSMUSG00000104441 ENSMUST00000194262 Gm35801 antisense Interval_169367 chr9 96734387 96734579 + 0 NA intron (ENSMUSG00000040433.16, intron 2 of 5) protein_coding-intron (ENSMUSG00000040433.16, intron 2 of 3) 18348 ENSMUSG00000040433.16 ENSMUSG00000040433 ENSMUST00000143403 Zbtb38 protein_coding Interval_156628 chr8 55743267 55743684 + 0 NA Intergenic Intergenic -33724 ENSMUSG00000109943.1 ENSMUSG00000109943 ENSMUST00000209227 Gm45610 processed_pseudogene Interval_80411 chr18 41950714 41951888 + 0 NA promoter-TSS (ENSMUSG00000056671.7) protein_coding-promoter-TSS (ENSMUSG00000056671.7) -84 ENSMUSG00000056671.7 ENSMUSG00000056671 ENSMUST00000236542 Prelid2 protein_coding Interval_107056 chr3 103200617 103201590 + 0 NA Intergenic Intergenic -2128 ENSMUSG00000054379.7 ENSMUSG00000054379 ENSMUST00000090704 2410024N13Rik pseudogene Interval_47085 chr13 75514168 75515945 + 0 NA TTS (ENSMUSG00000113773.1) processed_pseudogene-TTS (ENSMUSG00000113773.1) 3358 ENSMUSG00000113773.1 ENSMUSG00000113773 ENSMUST00000222840 Gm8278 processed_pseudogene Interval_125944 chr5 76115460 76116503 + 0 NA Intergenic Intergenic -24719 ENSMUSG00000029233.15 ENSMUSG00000029233 ENSMUST00000124217 Srd5a3 protein_coding Interval_11682 chr1 184644553 184645529 + 0 NA Intergenic Intergenic -15568 ENSMUSG00000103308.5 ENSMUSG00000103308 ENSMUST00000192129 Gm37800 lincRNA Interval_137126 chr6 67812226 67812738 + 0 NA Intergenic Intergenic -7972 ENSMUSG00000087917.1 ENSMUSG00000087917 ENSMUST00000157292 Gm24911 snoRNA Interval_76740 chr17 83767623 83767870 + 0 NA intron (ENSMUSG00000055817.18, intron 7 of 16) protein_coding-intron (ENSMUSG00000055817.18, intron 8 of 16) 38582 ENSMUSG00000055817.18 ENSMUSG00000055817 ENSMUST00000175920 Mta3 protein_coding Interval_78335 chr18 12035461 12036239 + 0 NA intron (ENSMUSG00000049411.15, intron 14 of 15) protein_coding-intron (ENSMUSG00000049411.15, intron 11 of 12) 85630 ENSMUSG00000049411.15 ENSMUSG00000049411 ENSMUST00000234833 Tmem241 protein_coding Interval_141954 chr6 135842769 135844400 + 0 NA intron (ENSMUSG00000030209.14, intron 5 of 14) protein_coding-intron (ENSMUSG00000030209.14, intron 4 of 13) -31921 ENSMUSG00000086614.2 ENSMUSG00000086614 ENSMUST00000155455 Gm14330 antisense Interval_167734 chr9 72371944 72372152 + 0 NA intron (ENSMUSG00000097211.2, intron 1 of 1) antisense-intron (ENSMUSG00000097211.2, intron 1 of 1) -12341 ENSMUSG00000102925.1 ENSMUSG00000102925 ENSMUST00000193900 Gm37150 TEC Interval_6907 chr1 120586615 120586953 + 0 NA Intergenic Intergenic -15634 ENSMUSG00000058665.8 ENSMUSG00000058665 ENSMUST00000079721 En1 protein_coding Interval_67188 chr16 44242183 44242942 + 0 NA intron (ENSMUSG00000022696.17, intron 24 of 24) protein_coding-intron (ENSMUSG00000022696.17, intron 25 of 25) 39936 ENSMUSG00000022696.17 ENSMUSG00000022696 ENSMUST00000124651 Sidt1 protein_coding Interval_114757 chr4 84782371 84782748 + 0 NA Intergenic Intergenic 41084 ENSMUSG00000086413.1 ENSMUSG00000086413 ENSMUST00000141637 Gm12415 lincRNA Interval_34738 chr12 9058081 9058376 + 0 NA Intergenic Intergenic 28201 ENSMUSG00000066637.2 ENSMUSG00000066637 ENSMUST00000219470 Ttc32 protein_coding Interval_108619 chr3 129597766 129598098 + 0 NA intron (ENSMUSG00000041220.10, intron 1 of 2) protein_coding-intron (ENSMUSG00000041220.10, intron 2 of 4) 59791 ENSMUSG00000106092.1 ENSMUSG00000106092 ENSMUST00000200283 Gm43072 TEC Interval_12950 chr10 8615013 8615734 + 0 NA Intergenic Intergenic -27561 ENSMUSG00000077582.1 ENSMUSG00000077582 ENSMUST00000104394 Gm24374 snRNA Interval_152208 chr7 130662574 130662751 + 0 NA intron (ENSMUSG00000030852.18, intron 1 of 15) protein_coding-intron (ENSMUSG00000030852.18, intron 2 of 20) -8270 ENSMUSG00000109225.1 ENSMUSG00000109225 ENSMUST00000207466 4930513N20Rik TEC Interval_1300 chr1 19372032 19372795 + 0 NA Intergenic Intergenic 41474 ENSMUSG00000100204.1 ENSMUSG00000100204 ENSMUST00000188428 Gm4849 processed_pseudogene Interval_27877 chr11 70577108 70577857 + 0 NA intron (ENSMUSG00000020827.18, intron 1 of 31) protein_coding-intron (ENSMUSG00000020827.18, intron 1 of 32) 23522 ENSMUSG00000020828.13 ENSMUSG00000020828 ENSMUST00000146248 Pld2 protein_coding Interval_59699 chr15 58713078 58713456 + 0 NA Intergenic Intergenic 68684 ENSMUSG00000093677.1 ENSMUSG00000093677 ENSMUST00000176387 Gm20712 sense_overlapping Interval_76947 chr17 85111455 85112286 + 0 NA intron (ENSMUSG00000071037.6, intron 2 of 3) protein_coding-intron (ENSMUSG00000071037.6, intron 2 of 10) 21264 ENSMUSG00000071037.6 ENSMUSG00000071037 ENSMUST00000234501 Camkmt protein_coding Interval_102354 chr3 22115054 22116326 + 0 NA intron (ENSMUSG00000027630.13, intron 1 of 15) protein_coding-intron (ENSMUSG00000027630.13, intron 1 of 15) -34575 ENSMUSG00000103293.1 ENSMUSG00000103293 ENSMUST00000195073 Gm5842 processed_pseudogene Interval_173444 chrX 93856636 93857204 + 0 NA Intergenic Intergenic 65042 ENSMUSG00000082728.1 ENSMUSG00000082728 ENSMUST00000117999 Supt20-ps processed_pseudogene Interval_56079 chr14 105402465 105403558 + 0 NA Intergenic Intergenic -24548 ENSMUSG00000115548.1 ENSMUSG00000115548 ENSMUST00000226670 5430440P10Rik lincRNA Interval_6894 chr1 120460896 120462502 + 0 NA Intergenic Intergenic 25894 ENSMUSG00000101275.1 ENSMUSG00000101275 ENSMUST00000186237 1700012E03Rik lincRNA Interval_96412 chr2 122296382 122296580 + 0 NA exon (ENSMUSG00000068452.8, exon 5 of 32) protein_coding-exon (ENSMUSG00000068452.8, exon 5 of 32) 1968 ENSMUSG00000068452.8 ENSMUSG00000068452 ENSMUST00000155820 Duox2 protein_coding Interval_119479 chr4 137844614 137845361 + 0 NA Intergenic Intergenic 38950 ENSMUSG00000085823.7 ENSMUSG00000085823 ENSMUST00000156022 Gm13012 antisense Interval_160999 chr8 116792240 116792911 + 0 NA Intergenic Intergenic -27096 ENSMUSG00000074072.2 ENSMUSG00000074072 ENSMUST00000098379 Gm10620 pseudogene Interval_160928 chr8 115160083 115160321 + 0 NA intron (ENSMUSG00000004637.15, intron 2 of 2) protein_coding-intron (ENSMUSG00000004637.15, intron 8 of 8) -107289 ENSMUSG00000088428.1 ENSMUSG00000088428 ENSMUST00000157803 Gm22556 rRNA Interval_67735 chr16 56672051 56672976 + 0 NA intron (ENSMUSG00000035258.15, intron 29 of 35) protein_coding-intron (ENSMUSG00000035258.15, intron 33 of 39) 44669 ENSMUSG00000022757.19 ENSMUSG00000022757 ENSMUST00000141404 Tfg protein_coding Interval_57302 chr15 8619129 8620519 + 0 NA Intergenic Intergenic 35249 ENSMUSG00000103047.1 ENSMUSG00000103047 ENSMUST00000195237 Gm37310 TEC Interval_39710 chr12 94262205 94262501 + 0 NA Intergenic Intergenic -202652 ENSMUSG00000113215.1 ENSMUSG00000113215 ENSMUST00000222410 Gm18749 processed_pseudogene Interval_31778 chr11 102795970 102796356 + 0 NA Intergenic Intergenic 9625 ENSMUSG00000034520.14 ENSMUSG00000034520 ENSMUST00000131164 Gjc1 protein_coding Interval_25897 chr11 52400078 52400295 + 0 NA intron (ENSMUSG00000036275.13, intron 1 of 1) protein_coding-intron (ENSMUSG00000036275.13, intron 1 of 2) 3758 ENSMUSG00000036275.13 ENSMUSG00000036275 ENSMUST00000136303 9530068E07Rik protein_coding Interval_136726 chr6 58640045 58641002 + 0 NA promoter-TSS (ENSMUSG00000029802.13) protein_coding-promoter-TSS (ENSMUSG00000029802.13) -59 ENSMUSG00000029802.13 ENSMUSG00000029802 ENSMUST00000134426 Abcg2 protein_coding Interval_52052 chr14 34879903 34881831 + 0 NA intron (ENSMUSG00000041078.7, intron 2 of 15) protein_coding-intron (ENSMUSG00000041078.7, intron 2 of 15) -13742 ENSMUSG00000065481.1 ENSMUSG00000065481 ENSMUST00000083547 Mir346 miRNA Interval_142382 chr6 141259959 141260251 + 0 NA intron (ENSMUSG00000041741.10, intron 1 of 5) protein_coding-intron (ENSMUSG00000041741.10, intron 1 of 15) -10096 ENSMUSG00000100707.1 ENSMUSG00000100707 ENSMUST00000190040 Gm28523 antisense Interval_38770 chr12 82193186 82194076 + 0 NA intron (ENSMUSG00000042700.16, intron 2 of 3) protein_coding-intron (ENSMUSG00000042700.16, intron 1 of 22) 24155 ENSMUSG00000042700.16 ENSMUSG00000042700 ENSMUST00000221327 Sipa1l1 protein_coding Interval_16531 chr10 63404486 63404710 + 0 NA intron (ENSMUSG00000036764.12, intron 2 of 3) protein_coding-intron (ENSMUSG00000036764.12, intron 3 of 4) -8401 ENSMUSG00000112572.1 ENSMUSG00000112572 ENSMUST00000218466 Gm7530 processed_pseudogene Interval_166005 chr9 55376039 55376392 + 0 NA intron (ENSMUSG00000032313.11, intron 1 of 2) protein_coding-intron (ENSMUSG00000032313.11, intron 1 of 10) 43014 ENSMUSG00000032313.11 ENSMUSG00000032313 ENSMUST00000130465 Tmem266 protein_coding Interval_40214 chr12 102586146 102586355 + 0 NA intron (ENSMUSG00000057963.9, intron 3 of 3) protein_coding-intron (ENSMUSG00000057963.9, intron 6 of 9) 5160 ENSMUSG00000102953.1 ENSMUSG00000102953 ENSMUST00000192133 Gm37019 TEC Interval_92487 chr2 60071762 60072167 + 0 NA intron (ENSMUSG00000026987.16, intron 1 of 34) protein_coding-intron (ENSMUSG00000026987.16, intron 1 of 34) 26750 ENSMUSG00000087181.3 ENSMUSG00000087181 ENSMUST00000140763 Gm13570 processed_pseudogene Interval_72927 chr17 33552438 33553701 + 0 NA intron (ENSMUSG00000024299.17, intron 12 of 12) protein_coding-intron (ENSMUSG00000024299.17, intron 24 of 24) 28859 ENSMUSG00000024299.17 ENSMUSG00000024299 ENSMUST00000174666 Adamts10 protein_coding Interval_89762 chr2 25261958 25263521 + 0 NA exon (ENSMUSG00000048707.9, exon 1 of 4) protein_coding-exon (ENSMUSG00000048707.9, exon 1 of 4) -6197 ENSMUSG00000048707.9 ENSMUSG00000048707 ENSMUST00000155738 Tprn protein_coding Interval_161461 chr8 120569069 120569362 + 0 NA exon (ENSMUSG00000031822.20, exon 8 of 16) protein_coding-exon (ENSMUSG00000031822.20, exon 8 of 16) 6592 ENSMUSG00000031822.20 ENSMUSG00000031822 ENSMUST00000141113 Gse1 protein_coding Interval_71358 chr17 22641087 22641326 + 0 NA Intergenic Intergenic 40255 ENSMUSG00000094921.2 ENSMUSG00000094921 ENSMUST00000234826 Vmn2r112 protein_coding Interval_43803 chr13 36663669 36664117 + 0 NA intron (ENSMUSG00000021420.13, intron 6 of 7) protein_coding-intron (ENSMUSG00000021420.13, intron 6 of 7) 9488 ENSMUSG00000077282.1 ENSMUSG00000077282 ENSMUST00000104094 Gm26395 snoRNA Interval_16778 chr10 68104460 68104646 + 0 NA intron (ENSMUSG00000019947.10, intron 8 of 9) protein_coding-intron (ENSMUSG00000019947.10, intron 9 of 10) -77927 ENSMUSG00000086838.1 ENSMUSG00000086838 ENSMUST00000143555 Gm16212 antisense Interval_264 KZ289068.1 412742 416902 + 0 NA NA NA NA NA Interval_105958 chr3 90304584 90305503 + 0 NA intron (ENSMUSG00000042390.9, intron 1 of 10) protein_coding-intron (ENSMUSG00000042390.9, intron 1 of 9) -6475 ENSMUSG00000108394.1 ENSMUSG00000108394 ENSMUST00000200213 Gm45477 TEC Interval_9232 chr1 155281253 155282099 + 0 NA TTS (ENSMUSG00000026469.14) protein_coding-TTS (ENSMUSG00000026469.14) 10351 ENSMUSG00000026469.14 ENSMUSG00000026469 ENSMUST00000143529 Xpr1 protein_coding Interval_31875 chr11 103509514 103509735 + 0 NA Intergenic Intergenic -5027 ENSMUSG00000078632.4 ENSMUSG00000078632 ENSMUST00000153273 Lrrc37a protein_coding Interval_52508 chr14 47188653 47189777 + 0 NA exon (ENSMUSG00000037580.10, exon 1 of 6) protein_coding-exon (ENSMUSG00000037580.10, exon 1 of 6) -10655 ENSMUSG00000115566.1 ENSMUSG00000115566 ENSMUST00000228847 Gm49136 processed_pseudogene Interval_30353 chr11 93812008 93812969 + 0 NA Intergenic Intergenic 63655 ENSMUSG00000054079.12 ENSMUSG00000054079 ENSMUST00000134807 Utp18 protein_coding Interval_151262 chr7 120409407 120410021 + 0 NA promoter-TSS (ENSMUSG00000051900.12) protein_coding-promoter-TSS (ENSMUSG00000051900.12) -65708 ENSMUSG00000051900.12 ENSMUSG00000051900 ENSMUST00000153845 Abca16 protein_coding Interval_142672 chr6 144948464 144948925 + 0 NA Intergenic Intergenic 89494 ENSMUSG00000088867.1 ENSMUSG00000088867 ENSMUST00000158242 Gm23071 rRNA Interval_55298 chr14 81323485 81323733 + 0 NA Intergenic Intergenic -46436 ENSMUSG00000115465.1 ENSMUSG00000115465 ENSMUST00000228079 Cyp2c73-ps processed_pseudogene Interval_12800 chr10 5576643 5577277 + 0 NA Intergenic Intergenic -16815 ENSMUSG00000046916.9 ENSMUSG00000046916 ENSMUST00000051809 Myct1 protein_coding Interval_95678 chr2 114052878 114053306 + 0 NA promoter-TSS (ENSMUSG00000068614.7) protein_coding-promoter-TSS (ENSMUSG00000068614.7) 456 ENSMUSG00000068614.7 ENSMUSG00000068614 ENSMUST00000149125 Actc1 protein_coding Interval_157942 chr8 76901625 76902702 + 0 NA promoter-TSS (ENSMUSG00000031618.13) protein_coding-promoter-TSS (ENSMUSG00000031618.13) -125 ENSMUSG00000031618.13 ENSMUSG00000031618 ENSMUST00000126697 Nr3c2 protein_coding Interval_31775 chr11 102777599 102778390 + 0 NA exon (ENSMUSG00000020926.16, exon 26 of 26) protein_coding-exon (ENSMUSG00000020926.16, exon 26 of 26) 3877 ENSMUSG00000020926.16 ENSMUSG00000020926 ENSMUST00000135513 Adam11 protein_coding Interval_50567 chr14 15669081 15669698 + 0 NA Intergenic Intergenic -67366 ENSMUSG00000114941.1 ENSMUSG00000114941 ENSMUST00000223575 Gm47779 processed_pseudogene Interval_55651 chr14 98167336 98169905 + 0 NA exon (ENSMUSG00000055639.16, exon 1 of 11) protein_coding-exon (ENSMUSG00000055639.16, exon 1 of 11) 1145 ENSMUSG00000055639.16 ENSMUSG00000055639 ENSMUST00000156684 Dach1 protein_coding Interval_82213 chr18 69198151 69198790 + 0 NA intron (ENSMUSG00000117889.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000117889.1, intron 1 of 1) 349 ENSMUSG00000117889.1 ENSMUSG00000117889 ENSMUST00000237660 A730085E03Rik lincRNA Interval_147485 chr7 67671136 67671369 + 0 NA exon (ENSMUSG00000030555.16, exon 4 of 4) protein_coding-exon (ENSMUSG00000030555.16, exon 4 of 4) 1200 ENSMUSG00000030555.16 ENSMUSG00000030555 ENSMUST00000154697 Ttc23 protein_coding Interval_81949 chr18 66222922 66223975 + 0 NA intron (ENSMUSG00000046318.16, intron 1 of 9) protein_coding-intron (ENSMUSG00000046318.16, intron 2 of 11) -4115 ENSMUSG00000076147.1 ENSMUSG00000076147 ENSMUST00000102193 Mir694 miRNA Interval_160740 chr8 111901811 111902565 + 0 NA intron (ENSMUSG00000031952.5, intron 1 of 1) protein_coding-intron (ENSMUSG00000031952.5, intron 1 of 1) 8259 ENSMUSG00000031952.5 ENSMUSG00000031952 ENSMUST00000034430 Chst5 protein_coding Interval_15474 chr10 47965978 47966174 + 0 NA Intergenic Intergenic -7355 ENSMUSG00000111911.1 ENSMUSG00000111911 ENSMUST00000218907 Gm47332 processed_pseudogene Interval_26756 chr11 60240088 60240693 + 0 NA promoter-TSS (ENSMUSG00000085132.1) antisense-promoter-TSS (ENSMUSG00000085132.1) -420 ENSMUSG00000085132.1 ENSMUSG00000085132 ENSMUST00000139025 Gm12265 antisense Interval_165913 chr9 54601516 54602943 + 0 NA intron (ENSMUSG00000032279.11, intron 10 of 10) protein_coding-intron (ENSMUSG00000032279.11, intron 10 of 10) 15895 ENSMUSG00000032279.11 ENSMUSG00000032279 ENSMUST00000214136 Idh3a protein_coding Interval_146491 chr7 46348251 46349598 + 0 NA exon (ENSMUSG00000109962.1, exon 1 of 2) lincRNA-exon (ENSMUSG00000109962.1, exon 1 of 2) 449 ENSMUSG00000109962.1 ENSMUSG00000109962 ENSMUST00000210215 1700025L06Rik lincRNA Interval_1513 chr1 24496704 24496952 + 0 NA intron (ENSMUSG00000026141.13, intron 11 of 50) protein_coding-intron (ENSMUSG00000026141.13, intron 11 of 47) -44083 ENSMUSG00000026141.13 ENSMUSG00000026141 ENSMUST00000051344 Col19a1 protein_coding Interval_330 chr1 4139212 4139643 + 0 NA intron (ENSMUSG00000025900.13, intron 22 of 29) protein_coding-intron (ENSMUSG00000025900.13, intron 22 of 29) 121092 ENSMUSG00000102948.1 ENSMUSG00000102948 ENSMUST00000195384 Gm6101 processed_pseudogene Interval_143254 chr7 4788578 4789843 + 0 NA promoter-TSS (ENSMUSG00000030431.8) protein_coding-promoter-TSS (ENSMUSG00000030431.8) -137 ENSMUSG00000030431.8 ENSMUSG00000030431 ENSMUST00000206315 Tmem238 protein_coding Interval_163737 chr9 25075815 25076352 + 0 NA Intergenic Intergenic -13339 ENSMUSG00000066810.2 ENSMUSG00000066810 ENSMUST00000086238 Gm10181 protein_coding Interval_89414 chr2 20548823 20550480 + 0 NA intron (ENSMUSG00000036617.17, intron 1 of 2) protein_coding-intron (ENSMUSG00000036617.17, intron 3 of 18) -10153 ENSMUSG00000098575.1 ENSMUSG00000098575 ENSMUST00000183963 Gm27446 misc_RNA Interval_133050 chr5 149516016 149516665 + 0 NA intron (ENSMUSG00000107132.1, intron 1 of 4) antisense-intron (ENSMUSG00000107132.1, intron 1 of 4) -13288 ENSMUSG00000106879.1 ENSMUSG00000106879 ENSMUST00000201267 Gm2566 processed_pseudogene Interval_164869 chr9 42647737 42648715 + 0 NA intron (ENSMUSG00000032017.14, intron 8 of 20) protein_coding-intron (ENSMUSG00000032017.14, intron 6 of 18) -127395 ENSMUSG00000093745.1 ENSMUSG00000093745 ENSMUST00000176676 Gm24420 misc_RNA Interval_1534 chr1 25006804 25007219 + 0 NA Intergenic Intergenic -4930 ENSMUSG00000100450.1 ENSMUSG00000100450 ENSMUST00000188406 Gm9443 processed_pseudogene Interval_22452 chr11 10337652 10338577 + 0 NA Intergenic Intergenic 38968 ENSMUSG00000084045.1 ENSMUSG00000084045 ENSMUST00000118697 Gm11997 processed_pseudogene Interval_90099 chr2 28007402 28007672 + 0 NA intron (ENSMUSG00000026837.16, intron 42 of 65) protein_coding-intron (ENSMUSG00000026837.16, intron 42 of 65) -14749 ENSMUSG00000026837.16 ENSMUSG00000026837 ENSMUST00000238851 Col5a1 protein_coding Interval_37924 chr12 73072698 73073051 + 0 NA Intergenic Intergenic -30059 ENSMUSG00000051367.8 ENSMUSG00000051367 ENSMUST00000175677 Six1 protein_coding Interval_8898 chr1 151916477 151916973 + 0 NA intron (ENSMUSG00000032666.16, intron 4 of 6) protein_coding-intron (ENSMUSG00000032666.16, intron 4 of 5) 41306 ENSMUSG00000100685.1 ENSMUSG00000100685 ENSMUST00000187716 Gm28610 antisense Interval_111269 chr4 16248845 16249555 + 0 NA intron (ENSMUSG00000083725.1, intron 1 of 1) processed_pseudogene-intron (ENSMUSG00000083725.1, intron 1 of 1) 2931 ENSMUSG00000083725.1 ENSMUSG00000083725 ENSMUST00000118093 Gm11865 processed_pseudogene Interval_95895 chr2 118174391 118175211 + 0 NA intron (ENSMUSG00000027344.14, intron 10 of 11) protein_coding-intron (ENSMUSG00000027344.14, intron 10 of 11) -50754 ENSMUSG00000101859.1 ENSMUSG00000101859 ENSMUST00000190311 Gm29233 lincRNA Interval_21124 chr10 126711821 126712150 + 0 NA Intergenic Intergenic -1594 ENSMUSG00000098756.1 ENSMUSG00000098756 ENSMUST00000184232 Mir378d miRNA Interval_127349 chr5 103348586 103349465 + 0 NA TTS (ENSMUSG00000105426.1) lincRNA-TTS (ENSMUSG00000105426.1) 2431 ENSMUSG00000105426.1 ENSMUSG00000105426 ENSMUST00000197576 1700021F02Rik lincRNA Interval_18353 chr10 85154192 85154407 + 0 NA intron (ENSMUSG00000020038.10, intron 2 of 12) protein_coding-intron (ENSMUSG00000020038.10, intron 2 of 12) -2943 ENSMUSG00000020038.10 ENSMUSG00000020038 ENSMUST00000214675 Cry1 protein_coding Interval_89576 chr2 22932479 22932689 + 0 NA intron (ENSMUSG00000026784.14, intron 9 of 10) protein_coding-intron (ENSMUSG00000026784.14, intron 9 of 10) -18752 ENSMUSG00000081861.1 ENSMUSG00000081861 ENSMUST00000121960 Gm14441 processed_pseudogene Interval_134893 chr6 33290013 33290811 + 0 NA intron (ENSMUSG00000029763.17, intron 3 of 5) protein_coding-intron (ENSMUSG00000029763.17, intron 3 of 17) -42313 ENSMUSG00000082217.1 ENSMUSG00000082217 ENSMUST00000122048 Gm1401 processed_pseudogene Interval_25404 chr11 47631088 47632034 + 0 NA intron (ENSMUSG00000020354.15, intron 1 of 2) protein_coding-intron (ENSMUSG00000020354.15, intron 2 of 2) 5908 ENSMUSG00000020354.15 ENSMUSG00000020354 ENSMUST00000128558 Sgcd protein_coding Interval_40502 chr12 105291123 105292190 + 0 NA Intergenic Intergenic -42214 ENSMUSG00000097929.9 ENSMUSG00000097929 ENSMUST00000180503 Tunar protein_coding Interval_79350 chr18 30955602 30955849 + 0 NA Intergenic Intergenic 257007 ENSMUSG00000057455.12 ENSMUSG00000057455 ENSMUST00000139924 Rit2 protein_coding Interval_154468 chr8 18460769 18461045 + 0 NA Intergenic Intergenic 51738 ENSMUSG00000077675.1 ENSMUSG00000077675 ENSMUST00000104487 Gm24469 snoRNA Interval_116675 chr4 116604540 116604793 + 0 NA exon (ENSMUSG00000028693.15, exon 2 of 5) protein_coding-exon (ENSMUSG00000028693.15, exon 2 of 5) 1582 ENSMUSG00000028693.15 ENSMUSG00000028693 ENSMUST00000148436 Nasp protein_coding Interval_126617 chr5 90965375 90965726 + 0 NA intron (ENSMUSG00000029376.8, intron 4 of 4) protein_coding-intron (ENSMUSG00000029376.8, intron 5 of 7) 34433 ENSMUSG00000029376.8 ENSMUSG00000029376 ENSMUST00000201851 Mthfd2l protein_coding Interval_8592 chr1 143632883 143633224 + 0 NA TTS (ENSMUSG00000026361.9) protein_coding-TTS (ENSMUSG00000026361.9) -7611 ENSMUSG00000033849.3 ENSMUSG00000033849 ENSMUST00000038252 B3galt2 protein_coding Interval_50795 chr14 19888428 19888740 + 0 NA intron (ENSMUSG00000043004.13, intron 3 of 3) protein_coding-intron (ENSMUSG00000043004.13, intron 5 of 5) 21604 ENSMUSG00000114436.1 ENSMUSG00000114436 ENSMUST00000224546 Gm48283 lincRNA Interval_80620 chr18 44668197 44668581 + 0 NA intron (ENSMUSG00000097610.2, intron 1 of 1) protein_coding-intron (ENSMUSG00000071856.10, intron 3 of 18) -6105 ENSMUSG00000071856.10 ENSMUSG00000071856 ENSMUST00000201270 Mcc protein_coding Interval_65041 chr16 18642499 18642735 + 0 NA Intergenic Intergenic -16146 ENSMUSG00000072214.7 ENSMUSG00000072214 ENSMUST00000231622 Septin5 protein_coding Interval_42239 chr13 10663414 10664039 + 0 NA intron (ENSMUSG00000097009.2, intron 5 of 10) antisense-intron (ENSMUSG00000097009.2, intron 1 of 7) -36435 ENSMUSG00000114134.1 ENSMUSG00000114134 ENSMUST00000221855 Gm47408 lincRNA Interval_96653 chr2 126853751 126854389 + 0 NA intron (ENSMUSG00000027365.14, intron 3 of 13) protein_coding-intron (ENSMUSG00000027365.14, intron 3 of 38) -10433 ENSMUSG00000081894.1 ENSMUSG00000081894 ENSMUST00000122023 Gm14212 processed_pseudogene Interval_17662 chr10 78631771 78632010 + 0 NA intron (ENSMUSG00000112674.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000112674.1, intron 1 of 1) -1590 ENSMUSG00000112017.1 ENSMUSG00000112017 ENSMUST00000217691 Gm7842 processed_pseudogene Interval_93118 chr2 70359093 70359400 + 0 NA intron (ENSMUSG00000042064.13, intron 31 of 33) protein_coding-intron (ENSMUSG00000042064.13, intron 32 of 34) -99736 ENSMUSG00000047965.9 ENSMUSG00000047965 ENSMUST00000140507 Rpl9-ps7 processed_pseudogene Interval_155853 chr8 40294832 40295155 + 0 NA intron (ENSMUSG00000031603.14, intron 1 of 2) protein_coding-intron (ENSMUSG00000031603.14, intron 1 of 2) 12936 ENSMUSG00000098431.1 ENSMUSG00000098431 ENSMUST00000183849 Mir7666 miRNA Interval_170612 chr9 109522718 109524293 + 0 NA TTS (ENSMUSG00000104572.5) transcribed_unprocessed_pseudogene-TTS (ENSMUSG00000104572.5) 10539 ENSMUSG00000104572.5 ENSMUSG00000104572 ENSMUST00000198015 Fbxw23 transcribed_unprocessed_pseudogene Interval_167259 chr9 66805732 66806554 + 0 NA promoter-TSS (ENSMUSG00000059237.6) processed_pseudogene-promoter-TSS (ENSMUSG00000059237.6) -205 ENSMUSG00000059237.6 ENSMUSG00000059237 ENSMUST00000112182 Ppp1r2-ps4 processed_pseudogene Interval_72306 chr17 29072418 29074331 + 0 NA promoter-TSS (ENSMUSG00000085912.2) lincRNA-promoter-TSS (ENSMUSG00000085912.2) -1032 ENSMUSG00000085912.2 ENSMUSG00000085912 ENSMUST00000233713 Trp53cor1 lincRNA Interval_19110 chr10 94646797 94647123 + 0 NA intron (ENSMUSG00000112477.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000112477.1, intron 1 of 1) 6092 ENSMUSG00000112473.1 ENSMUSG00000112473 ENSMUST00000218051 Gm48658 processed_pseudogene Interval_160927 chr8 115157767 115159414 + 0 NA intron (ENSMUSG00000004637.15, intron 2 of 2) protein_coding-intron (ENSMUSG00000004637.15, intron 8 of 8) -105677 ENSMUSG00000088428.1 ENSMUSG00000088428 ENSMUST00000157803 Gm22556 rRNA Interval_118441 chr4 131637564 131637760 + 0 NA Intergenic Intergenic 34479 ENSMUSG00000087171.1 ENSMUSG00000087171 ENSMUST00000138697 Gm12962 lincRNA Interval_21398 chr10 128358678 128359282 + 0 NA intron (ENSMUSG00000005683.8, intron 7 of 10) protein_coding-intron (ENSMUSG00000005683.8, intron 7 of 10) 9739 ENSMUSG00000089313.2 ENSMUSG00000089313 ENSMUST00000158688 Gm23182 snoRNA Interval_151808 chr7 126784620 126785417 + 0 NA TTS (ENSMUSG00000030697.7) protein_coding-TTS (ENSMUSG00000030697.7) 3535 ENSMUSG00000030699.16 ENSMUSG00000030699 ENSMUST00000094037 Tbx6 protein_coding Interval_137148 chr6 68201611 68202048 + 0 NA Intergenic Intergenic 13424 ENSMUSG00000105163.1 ENSMUSG00000105163 ENSMUST00000199402 Gm4873 processed_pseudogene Interval_21502 chr10 128957902 128958557 + 0 NA TTS (ENSMUSG00000025347.4) protein_coding-TTS (ENSMUSG00000025347.4) 2759 ENSMUSG00000025347.4 ENSMUSG00000025347 ENSMUST00000026398 Mettl7b protein_coding Interval_174229 chrX 140432977 140434387 + 0 NA exon (ENSMUSG00000042425.18, exon 15 of 15) protein_coding-exon (ENSMUSG00000042425.18, exon 15 of 15) 12700 ENSMUSG00000082031.1 ENSMUSG00000082031 ENSMUST00000117903 Gm8097 processed_pseudogene Interval_53659 chr14 60691448 60692247 + 0 NA promoter-TSS (ENSMUSG00000021990.16) protein_coding-promoter-TSS (ENSMUSG00000021990.16) -41059 ENSMUSG00000021990.16 ENSMUSG00000021990 ENSMUST00000162939 Spata13 protein_coding Interval_131841 chr5 140292175 140292648 + 0 NA intron (ENSMUSG00000029554.15, intron 9 of 16) protein_coding-intron (ENSMUSG00000029554.15, intron 9 of 17) -29245 ENSMUSG00000036639.12 ENSMUSG00000036639 ENSMUST00000145898 Nudt1 protein_coding Interval_85943 chr19 33729762 33730835 + 0 NA intron (ENSMUSG00000087303.3, intron 3 of 5) protein_coding-intron (ENSMUSG00000024766.15, intron 1 of 10) 558 ENSMUSG00000087303.3 ENSMUSG00000087303 ENSMUST00000235430 Lipo2 protein_coding Interval_144917 chr7 28923632 28924371 + 0 NA exon (ENSMUSG00000109314.1, exon 2 of 2) sense_intronic-exon (ENSMUSG00000109314.1, exon 2 of 2) 19527 ENSMUSG00000109314.1 ENSMUSG00000109314 ENSMUST00000208229 Gm44699 sense_intronic Interval_121121 chr4 153236573 153237179 + 0 NA Intergenic Intergenic 18700 ENSMUSG00000087454.1 ENSMUSG00000087454 ENSMUST00000126141 Gm13174 lincRNA Interval_78823 chr18 20814957 20815796 + 0 NA Intergenic Intergenic 29216 ENSMUSG00000088549.1 ENSMUSG00000088549 ENSMUST00000157924 Gm24959 snRNA Interval_32912 chr11 113051446 113053171 + 0 NA intron (ENSMUSG00000087259.7, intron 1 of 1) lincRNA-intron (ENSMUSG00000087259.7, intron 2 of 2) 120769 ENSMUSG00000087259.7 ENSMUSG00000087259 ENSMUST00000150712 2610035D17Rik lincRNA Interval_120187 chr4 143856265 143856641 + 0 NA Intergenic Intergenic 9946 ENSMUSG00000029451.14 ENSMUSG00000029451 ENSMUST00000105768 Gm13103 protein_coding Interval_12568 chr10 3302703 3302900 + 0 NA promoter-TSS (ENSMUSG00000111114.1) processed_pseudogene-promoter-TSS (ENSMUSG00000111114.1) -248 ENSMUSG00000111114.1 ENSMUSG00000111114 ENSMUST00000215318 Gm18703 processed_pseudogene Interval_8422 chr1 139131497 139131836 + 0 NA intron (ENSMUSG00000056268.15, intron 2 of 9) protein_coding-intron (ENSMUSG00000056268.15, intron 13 of 20) 2999 ENSMUSG00000085481.1 ENSMUSG00000085481 ENSMUST00000129972 Gm16304 processed_pseudogene Interval_124110 chr5 38388892 38389109 + 0 NA intron (ENSMUSG00000005107.13, intron 4 of 4) protein_coding-intron (ENSMUSG00000005107.13, intron 7 of 10) 44565 ENSMUSG00000106932.1 ENSMUSG00000106932 ENSMUST00000201983 4930487D11Rik lincRNA Interval_19167 chr10 95257725 95259323 + 0 NA intron (ENSMUSG00000045867.10, intron 2 of 2) protein_coding-intron (ENSMUSG00000045867.10, intron 2 of 2) 56329 ENSMUSG00000112744.1 ENSMUSG00000112744 ENSMUST00000219461 Gm48880 TEC Interval_160913 chr8 114972518 114973839 + 0 NA intron (ENSMUSG00000004637.15, intron 8 of 8) protein_coding-intron (ENSMUSG00000004637.15, intron 8 of 8) 79735 ENSMUSG00000088428.1 ENSMUSG00000088428 ENSMUST00000157803 Gm22556 rRNA Interval_13488 chr10 18602036 18603048 + 0 NA intron (ENSMUSG00000019852.7, intron 27 of 33) protein_coding-intron (ENSMUSG00000019852.7, intron 27 of 32) -36587 ENSMUSG00000111173.1 ENSMUSG00000111173 ENSMUST00000215943 Gm48297 processed_pseudogene Interval_1404 chr1 21380981 21381782 + 0 NA Intergenic Intergenic 1826 ENSMUSG00000094926.1 ENSMUSG00000094926 ENSMUST00000140035 Gm16533 processed_pseudogene Interval_49780 chr13 115076143 115076905 + 0 NA intron (ENSMUSG00000042284.10, intron 1 of 18) protein_coding-intron (ENSMUSG00000042284.10, intron 1 of 28) -12977 ENSMUSG00000114255.1 ENSMUSG00000114255 ENSMUST00000225343 Gm10734 antisense Interval_9666 chr1 160876442 160877128 + 0 NA promoter-TSS (ENSMUSG00000077648.1) snoRNA-promoter-TSS (ENSMUSG00000077648.1) -463 ENSMUSG00000077648.1 ENSMUSG00000077648 ENSMUST00000104460 Gm24988 snoRNA Interval_17395 chr10 76335982 76338199 + 0 NA intron (ENSMUSG00000020231.15, intron 1 of 14) protein_coding-intron (ENSMUSG00000020231.15, intron 1 of 37) 8142 ENSMUSG00000020231.15 ENSMUSG00000020231 ENSMUST00000162766 Dip2a protein_coding Interval_170048 chr9 104062602 104064051 + 0 NA promoter-TSS (ENSMUSG00000032557.13) protein_coding-promoter-TSS (ENSMUSG00000032557.13) -421 ENSMUSG00000032557.13 ENSMUSG00000032557 ENSMUST00000214222 Uba5 protein_coding Interval_137843 chr6 82881092 82883009 + 0 NA promoter-TSS (ENSMUSG00000100291.6) lincRNA-promoter-TSS (ENSMUSG00000100291.6) -218 ENSMUSG00000100291.6 ENSMUSG00000100291 ENSMUST00000191170 2310069B03Rik lincRNA Interval_149718 chr7 100907254 100909413 + 0 NA intron (ENSMUSG00000032875.8, intron 1 of 20) protein_coding-intron (ENSMUSG00000032875.8, intron 1 of 20) -13643 ENSMUSG00000032875.8 ENSMUSG00000032875 ENSMUST00000208735 Arhgef17 protein_coding Interval_88452 chr2 5170889 5172978 + 0 NA intron (ENSMUSG00000026676.7, intron 2 of 2) protein_coding-intron (ENSMUSG00000026676.7, intron 2 of 2) 15541 ENSMUSG00000081005.1 ENSMUSG00000081005 ENSMUST00000119322 Gm13198 processed_pseudogene Interval_87085 chr19 46031967 46032274 + 0 NA TTS (ENSMUSG00000025223.15) protein_coding-TTS (ENSMUSG00000025223.15) 13091 ENSMUSG00000025223.15 ENSMUSG00000025223 ENSMUST00000136203 Ldb1 protein_coding Interval_84132 chr19 7411899 7412657 + 0 NA Intergenic Intergenic -8131 ENSMUSG00000053080.10 ENSMUSG00000053080 ENSMUST00000160561 2700081O15Rik protein_coding Interval_60954 chr15 78160091 78160277 + 0 NA intron (ENSMUSG00000016637.7, intron 6 of 6) protein_coding-intron (ENSMUSG00000016637.7, intron 6 of 6) 6752 ENSMUSG00000016637.7 ENSMUSG00000016637 ENSMUST00000229417 Ift27 protein_coding Interval_60108 chr15 65810828 65811045 + 0 NA intron (ENSMUSG00000015002.18, intron 1 of 22) protein_coding-intron (ENSMUSG00000015002.18, intron 1 of 22) -40185 ENSMUSG00000015002.18 ENSMUSG00000015002 ENSMUST00000174749 Efr3a protein_coding Interval_157737 chr8 72644579 72645363 + 0 NA Intergenic Intergenic -5323 ENSMUSG00000048148.18 ENSMUSG00000048148 ENSMUST00000162248 Nwd1 protein_coding Interval_111575 chr4 23653346 23654053 + 0 NA Intergenic Intergenic 6645 ENSMUSG00000084179.1 ENSMUSG00000084179 ENSMUST00000119585 Gm11890 processed_pseudogene Interval_6799 chr1 119537512 119538800 + 0 NA Intergenic Intergenic -1991 ENSMUSG00000101731.1 ENSMUSG00000101731 ENSMUST00000186206 3830432H09Rik lincRNA Interval_148066 chr7 78964003 78964379 + 0 NA Intergenic Intergenic -40305 ENSMUSG00000108670.1 ENSMUSG00000108670 ENSMUST00000206812 Gm44815 TEC Interval_34339 chr12 3491079 3491263 + 0 NA intron (ENSMUSG00000037486.18, intron 3 of 4) protein_coding-intron (ENSMUSG00000037486.18, intron 9 of 10) 16512 ENSMUSG00000037486.18 ENSMUSG00000037486 ENSMUST00000152196 Asxl2 protein_coding Interval_97304 chr2 133380665 133381748 + 0 NA Intergenic Intergenic 50282 ENSMUSG00000098578.1 ENSMUSG00000098578 ENSMUST00000184570 Gm27449 snRNA Interval_4440 chr1 74212357 74212731 + 0 NA promoter-TSS (ENSMUSG00000094768.1) snRNA-promoter-TSS (ENSMUSG00000094768.1) -269 ENSMUSG00000094768.1 ENSMUSG00000094768 ENSMUST00000101821 Gm25524 snRNA Interval_161414 chr8 120326801 120327537 + 0 NA intron (ENSMUSG00000031822.20, intron 1 of 2) protein_coding-intron (ENSMUSG00000092329.1, intron 1 of 15) -98939 ENSMUSG00000097960.1 ENSMUSG00000097960 ENSMUST00000183235 A330074K22Rik lincRNA Interval_150645 chr7 113058746 113060086 + 0 NA Intergenic Intergenic -60282 ENSMUSG00000088671.1 ENSMUSG00000088671 ENSMUST00000158046 Gm23662 rRNA Interval_21968 chr11 5474139 5474433 + 0 NA Intergenic Intergenic 21160 ENSMUSG00000085232.3 ENSMUSG00000085232 ENSMUST00000145746 Gm11962 processed_pseudogene Interval_63422 chr15 100972855 100973046 + 0 NA exon (ENSMUSG00000023033.14, exon 10 of 27) protein_coding-exon (ENSMUSG00000023033.14, exon 10 of 27) 2828 ENSMUSG00000023033.14 ENSMUSG00000023033 ENSMUST00000201246 Scn8a protein_coding Interval_52605 chr14 47829130 47830112 + 0 NA Intergenic Intergenic -24302 ENSMUSG00000115215.1 ENSMUSG00000115215 ENSMUST00000226360 Gm41148 lincRNA Interval_114846 chr4 86269922 86270386 + 0 NA intron (ENSMUSG00000066113.16, intron 13 of 28) protein_coding-intron (ENSMUSG00000066113.16, intron 12 of 27) 172187 ENSMUSG00000083272.1 ENSMUSG00000083272 ENSMUST00000118478 Gm12550 processed_pseudogene Interval_168815 chr9 87426749 87427053 + 0 NA Intergenic Intergenic 32651 ENSMUSG00000099385.1 ENSMUSG00000099385 ENSMUST00000188230 Gm9540 processed_pseudogene Interval_134353 chr6 26279764 26280421 + 0 NA Intergenic Intergenic 180338 ENSMUSG00000088387.1 ENSMUSG00000088387 ENSMUST00000157762 Gm24691 snRNA Interval_152272 chr7 131268736 131269337 + 0 NA exon (ENSMUSG00000006204.7, exon 39 of 71) protein_coding-exon (ENSMUSG00000006204.7, exon 39 of 71) 53256 ENSMUSG00000040205.8 ENSMUSG00000040205 ENSMUST00000046611 Cuzd1 protein_coding Interval_115329 chr4 96591090 96592041 + 0 NA promoter-TSS (ENSMUSG00000015224.10) protein_coding-promoter-TSS (ENSMUSG00000015224.10) 13 ENSMUSG00000015224.10 ENSMUSG00000015224 ENSMUST00000126509 Cyp2j9 protein_coding Interval_2882 chr1 47446074 47446582 + 0 NA Intergenic Intergenic -10563 ENSMUSG00000103246.1 ENSMUSG00000103246 ENSMUST00000195733 Gm38090 TEC Interval_127537 chr5 104908243 104909734 + 0 NA Intergenic Intergenic -27663 ENSMUSG00000096561.1 ENSMUSG00000096561 ENSMUST00000178720 Gm24097 snRNA Interval_22544 chr11 11656462 11657738 + 0 NA intron (ENSMUSG00000085652.1, intron 1 of 3) processed_transcript-intron (ENSMUSG00000085652.1, intron 1 of 3) -27903 ENSMUSG00000018654.17 ENSMUSG00000018654 ENSMUST00000018798 Ikzf1 protein_coding Interval_100085 chr2 166983254 166984069 + 0 NA intron (ENSMUSG00000039536.16, intron 1 of 11) protein_coding-intron (ENSMUSG00000039536.16, intron 1 of 11) -18945 ENSMUSG00000039536.16 ENSMUSG00000039536 ENSMUST00000130104 Stau1 protein_coding Interval_85065 chr19 21952600 21952888 + 0 NA Intergenic Intergenic -1855 ENSMUSG00000118237.1 ENSMUSG00000118237 ENSMUST00000237102 Gm50133 lincRNA Interval_103669 chr3 51493236 51494031 + 0 NA TTS (ENSMUSG00000102570.1) TEC-TTS (ENSMUSG00000102570.1) 4013 ENSMUSG00000102570.1 ENSMUSG00000102570 ENSMUST00000195131 Gm37968 TEC Interval_170653 chr9 109912617 109913387 + 0 NA Intergenic Intergenic 11748 ENSMUSG00000105191.1 ENSMUSG00000105191 ENSMUST00000197587 Gm4644 processed_pseudogene Interval_53371 chr14 56706789 56707232 + 0 NA Intergenic Intergenic -7649 ENSMUSG00000097743.1 ENSMUSG00000097743 ENSMUST00000180682 Gm16973 lincRNA Interval_57824 chr15 22086390 22087347 + 0 NA Intergenic Intergenic 128436 ENSMUSG00000115708.1 ENSMUSG00000115708 ENSMUST00000227154 Gm49187 TEC Interval_148089 chr7 79166568 79167511 + 0 NA Intergenic Intergenic -18808 ENSMUSG00000030605.15 ENSMUSG00000030605 ENSMUST00000206844 Mfge8 protein_coding Interval_74498 chr17 52253670 52253877 + 0 NA Intergenic Intergenic -50794 ENSMUSG00000117076.1 ENSMUSG00000117076 ENSMUST00000232754 Gm41600 lincRNA Interval_74243 chr17 47672108 47673819 + 0 NA promoter-TSS (ENSMUSG00000090115.7) protein_coding-promoter-TSS (ENSMUSG00000090115.7) 243 ENSMUSG00000090115.7 ENSMUSG00000090115 ENSMUST00000131550 Usp49 protein_coding Interval_102436 chr3 25968724 25968961 + 0 NA intron (ENSMUSG00000063887.13, intron 3 of 7) protein_coding-intron (ENSMUSG00000063887.13, intron 1 of 5) 237599 ENSMUSG00000104295.1 ENSMUSG00000104295 ENSMUST00000192273 Gm6197 processed_pseudogene Interval_7986 chr1 135064773 135065074 + 0 NA intron (ENSMUSG00000042793.13, intron 3 of 17) protein_coding-intron (ENSMUSG00000042793.13, intron 3 of 17) -42832 ENSMUSG00000042793.13 ENSMUSG00000042793 ENSMUST00000139369 Lgr6 protein_coding Interval_116023 chr4 107066399 107068026 + 0 NA promoter-TSS (ENSMUSG00000028622.11) protein_coding-promoter-TSS (ENSMUSG00000028622.11) 224 ENSMUSG00000028621.17 ENSMUSG00000028621 ENSMUST00000127916 Cyb5rl protein_coding Interval_160102 chr8 106442313 106443757 + 0 NA Intergenic Intergenic 27708 ENSMUSG00000031907.9 ENSMUSG00000031907 ENSMUST00000212874 Zfp90 protein_coding Interval_10968 chr1 177652596 177652795 + 0 NA Intergenic Intergenic -9752 ENSMUSG00000101746.1 ENSMUSG00000101746 ENSMUST00000189507 2310043L19Rik lincRNA Interval_28735 chr11 77984393 77985400 + 0 NA intron (ENSMUSG00000037791.15, intron 2 of 10) protein_coding-intron (ENSMUSG00000037791.15, intron 2 of 14) -38733 ENSMUSG00000037791.15 ENSMUSG00000037791 ENSMUST00000125079 Phf12 protein_coding Interval_149593 chr7 99910612 99910836 + 0 NA intron (ENSMUSG00000035211.9, intron 1 of 7) protein_coding-intron (ENSMUSG00000035211.9, intron 12 of 18) 4562 ENSMUSG00000035211.9 ENSMUSG00000035211 ENSMUST00000208449 Xrra1 protein_coding Interval_20749 chr10 120722364 120723512 + 0 NA Intergenic Intergenic -8877 ENSMUSG00000103017.1 ENSMUSG00000103017 ENSMUST00000195670 Gm37505 TEC Interval_163378 chr9 21161002 21161933 + 0 NA Intergenic Intergenic -18273 ENSMUSG00000019471.10 ENSMUSG00000019471 ENSMUST00000215866 Cdc37 protein_coding Interval_102344 chr3 22065446 22066510 + 0 NA Intergenic Intergenic 10164 ENSMUSG00000106019.1 ENSMUSG00000106019 ENSMUST00000199072 Gm43672 lincRNA Interval_162373 chr8 127541930 127542651 + 0 NA intron (ENSMUSG00000025812.18, intron 22 of 24) protein_coding-intron (ENSMUSG00000025812.18, intron 21 of 23) -19145 ENSMUSG00000090074.1 ENSMUSG00000090074 ENSMUST00000161478 Gm6921 processed_pseudogene Interval_34205 chr11 121285610 121286942 + 0 NA intron (ENSMUSG00000039275.9, intron 2 of 8) protein_coding-intron (ENSMUSG00000039275.9, intron 2 of 8) -4468 ENSMUSG00000039275.9 ENSMUSG00000039275 ENSMUST00000151492 Foxk2 protein_coding Interval_111350 chr4 19574765 19575675 + 0 NA promoter-TSS (ENSMUSG00000028229.11) protein_coding-promoter-TSS (ENSMUSG00000028229.11) 58 ENSMUSG00000028229.11 ENSMUSG00000028229 ENSMUST00000029888 Rmdn1 protein_coding Interval_20018 chr10 112044341 112044559 + 0 NA intron (ENSMUSG00000110391.2, intron 2 of 13) unprocessed_pseudogene-intron (ENSMUSG00000110391.2, intron 2 of 13) 4836 ENSMUSG00000110391.2 ENSMUSG00000110391 ENSMUST00000210819 Gm7269 unprocessed_pseudogene Interval_28500 chr11 76366468 76367073 + 0 NA intron (ENSMUSG00000020844.6, intron 1 of 1) protein_coding-intron (ENSMUSG00000020844.6, intron 1 of 7) 32298 ENSMUSG00000020844.6 ENSMUSG00000020844 ENSMUST00000131472 Nxn protein_coding Interval_162150 chr8 125530603 125532412 + 0 NA intron (ENSMUSG00000001995.9, intron 1 of 22) protein_coding-intron (ENSMUSG00000001995.9, intron 1 of 21) 38301 ENSMUSG00000001995.9 ENSMUSG00000001995 ENSMUST00000212604 Sipa1l2 protein_coding Interval_53436 chr14 57503578 57503781 + 0 NA intron (ENSMUSG00000040040.16, intron 20 of 22) protein_coding-intron (ENSMUSG00000040040.16, intron 23 of 25) 7156 ENSMUSG00000086486.1 ENSMUSG00000086486 ENSMUST00000149702 Ift88os antisense Interval_112445 chr4 41320025 41320367 + 0 NA Intergenic Intergenic -5307 ENSMUSG00000028436.8 ENSMUSG00000028436 ENSMUST00000030145 Dcaf12 protein_coding Interval_105596 chr3 87993346 87993711 + 0 NA TTS (ENSMUSG00000004892.13) protein_coding-TTS (ENSMUSG00000004892.13) 927 ENSMUSG00000004892.13 ENSMUSG00000004892 ENSMUST00000194193 Bcan protein_coding Interval_118718 chr4 133347582 133348593 + 0 NA intron (ENSMUSG00000037622.14, intron 2 of 5) protein_coding-intron (ENSMUSG00000037622.14, intron 1 of 5) -21689 ENSMUSG00000092745.1 ENSMUSG00000092745 ENSMUST00000175004 Mir5122 miRNA Interval_59559 chr15 55276142 55276712 + 0 NA Intergenic Intergenic -13824 ENSMUSG00000095792.1 ENSMUSG00000095792 ENSMUST00000179457 Gm26296 snRNA Interval_102702 chr3 30399958 30400595 + 0 NA intron (ENSMUSG00000027684.16, intron 2 of 8) protein_coding-intron (ENSMUSG00000027684.16, intron 1 of 11) -88150 ENSMUSG00000104079.1 ENSMUSG00000104079 ENSMUST00000192224 Gm37024 TEC Interval_143782 chr7 16279423 16279804 + 0 NA intron (ENSMUSG00000041375.18, intron 2 of 4) protein_coding-intron (ENSMUSG00000041375.18, intron 6 of 10) 5923 ENSMUSG00000041375.18 ENSMUSG00000041375 ENSMUST00000145519 Ccdc9 protein_coding Interval_154842 chr8 24278600 24278891 + 0 NA Intergenic Intergenic 58235 ENSMUSG00000109419.1 ENSMUSG00000109419 ENSMUST00000207606 Gm45163 lincRNA Interval_158757 chr8 85944450 85944661 + 0 NA intron (ENSMUSG00000036879.15, intron 11 of 31) protein_coding-intron (ENSMUSG00000036879.15, intron 11 of 31) -49690 ENSMUSG00000098439.1 ENSMUSG00000098439 ENSMUST00000183645 Hm629797 sense_intronic Interval_142820 chr6 146164863 146165070 + 0 NA intron (ENSMUSG00000030287.15, intron 51 of 55) protein_coding-intron (ENSMUSG00000030287.15, intron 52 of 56) 67513 ENSMUSG00000030287.15 ENSMUSG00000030287 ENSMUST00000111673 Itpr2 protein_coding Interval_153544 chr8 3348373 3349553 + 0 NA Intergenic Intergenic -4474 ENSMUSG00000004568.13 ENSMUSG00000004568 ENSMUST00000145360 Arhgef18 protein_coding Interval_1131 chr1 15902416 15902907 + 0 NA Intergenic Intergenic -9939 ENSMUSG00000032719.4 ENSMUSG00000032719 ENSMUST00000040695 Sbspon protein_coding Interval_158303 chr8 80971418 80972086 + 0 NA Intergenic Intergenic -33085 ENSMUSG00000098001.1 ENSMUSG00000098001 ENSMUST00000182891 Gm27048 lincRNA Interval_157479 chr8 70625233 70625743 + 0 NA Intergenic Intergenic 6968 ENSMUSG00000038508.7 ENSMUSG00000038508 ENSMUST00000110103 Gdf15 protein_coding Interval_117426 chr4 123623593 123625867 + 0 NA intron (ENSMUSG00000028649.21, intron 1 of 97) protein_coding-intron (ENSMUSG00000028649.21, intron 1 of 92) -5565 ENSMUSG00000081585.1 ENSMUSG00000081585 ENSMUST00000121158 Gm12926 processed_pseudogene Interval_19188 chr10 95381112 95381812 + 0 NA Intergenic Intergenic 26574 ENSMUSG00000100550.2 ENSMUSG00000100550 ENSMUST00000219492 2310039L15Rik lincRNA Interval_171583 chr9 119357227 119358390 + 0 NA intron (ENSMUSG00000035769.9, intron 1 of 19) protein_coding-intron (ENSMUSG00000035769.9, intron 1 of 18) 221 ENSMUSG00000035769.9 ENSMUSG00000035769 ENSMUST00000213383 Xylb protein_coding Interval_138774 chr6 91750788 91751674 + 0 NA intron (ENSMUSG00000030096.8, intron 1 of 1) protein_coding-intron (ENSMUSG00000030096.8, intron 13 of 14) 1047 ENSMUSG00000030096.8 ENSMUSG00000030096 ENSMUST00000206988 Slc6a6 protein_coding Interval_61340 chr15 80945793 80946069 + 0 NA Intergenic Intergenic -2586 ENSMUSG00000022407.10 ENSMUSG00000022407 ENSMUST00000199284 Adsl protein_coding Interval_42854 chr13 20438922 20440022 + 0 NA intron (ENSMUSG00000041112.17, intron 15 of 21) protein_coding-intron (ENSMUSG00000041112.17, intron 15 of 21) 34018 ENSMUSG00000113313.1 ENSMUSG00000113313 ENSMUST00000221484 Gm32036 antisense Interval_162199 chr8 125897587 125899145 + 0 NA promoter-TSS (ENSMUSG00000060212.13) protein_coding-promoter-TSS (ENSMUSG00000060212.13) 452 ENSMUSG00000100812.1 ENSMUSG00000100812 ENSMUST00000188193 A730098A19Rik antisense Interval_40393 chr12 104604123 104604822 + 0 NA Intergenic Intergenic 84504 ENSMUSG00000112954.1 ENSMUSG00000112954 ENSMUST00000222329 Gm49732 lincRNA Interval_92438 chr2 59722598 59723893 + 0 NA intron (ENSMUSG00000035168.16, intron 1 of 1) protein_coding-intron (ENSMUSG00000035168.16, intron 3 of 26) -82823 ENSMUSG00000035168.16 ENSMUSG00000035168 ENSMUST00000147650 Tanc1 protein_coding Interval_173387 chrX 86241844 86242106 + 0 NA Intergenic Intergenic 14244 ENSMUSG00000035427.18 ENSMUSG00000035427 ENSMUST00000096378 Mageb4 protein_coding Interval_47405 chr13 83633406 83633601 + 0 NA TTS (ENSMUSG00000005583.16) protein_coding-TTS (ENSMUSG00000005583.16) -53719 ENSMUSG00000114254.1 ENSMUSG00000114254 ENSMUST00000224411 Gm48067 processed_pseudogene Interval_106441 chr3 96309702 96310051 + 0 NA Intergenic Intergenic -15943 ENSMUSG00000015947.10 ENSMUSG00000015947 ENSMUST00000200420 Fcgr1 protein_coding Interval_83055 chr18 80855286 80855904 + 0 NA TTS (ENSMUSG00000114756.1) processed_pseudogene-TTS (ENSMUSG00000114756.1) 1286 ENSMUSG00000114756.1 ENSMUSG00000114756 ENSMUST00000225547 Gm47273 processed_pseudogene Interval_34247 chr11 121607773 121607971 + 0 NA intron (ENSMUSG00000039230.14, intron 5 of 9) protein_coding-intron (ENSMUSG00000039230.14, intron 34 of 38) 9556 ENSMUSG00000039230.14 ENSMUSG00000039230 ENSMUST00000151666 Tbcd protein_coding Interval_144613 chr7 27130542 27131436 + 0 NA promoter-TSS (ENSMUSG00000086868.1) antisense-promoter-TSS (ENSMUSG00000086868.1) -315 ENSMUSG00000086868.1 ENSMUSG00000086868 ENSMUST00000153562 Gm15883 antisense Interval_93139 chr2 70550596 70551035 + 0 NA intron (ENSMUSG00000087264.1, intron 1 of 2) antisense-intron (ENSMUSG00000087264.1, intron 1 of 2) -11348 ENSMUSG00000070880.10 ENSMUSG00000070880 ENSMUST00000140478 Gad1 protein_coding Interval_32418 chr11 107441118 107441809 + 0 NA intron (ENSMUSG00000040430.18, intron 1 of 9) protein_coding-intron (ENSMUSG00000040430.18, intron 1 of 9) 13187 ENSMUSG00000087113.1 ENSMUSG00000087113 ENSMUST00000136927 Gm11714 processed_transcript Interval_77744 chr17 94853311 94853620 + 0 NA Intergenic Intergenic 5153 ENSMUSG00000117582.1 ENSMUSG00000117582 ENSMUST00000234178 Gm19853 processed_pseudogene Interval_100326 chr2 168415294 168415833 + 0 NA Intergenic Intergenic 3011 ENSMUSG00000082239.1 ENSMUSG00000082239 ENSMUST00000119539 Gm14234 processed_pseudogene Interval_109742 chr3 146472386 146473369 + 0 NA intron (ENSMUSG00000028188.13, intron 1 of 3) protein_coding-intron (ENSMUSG00000028188.13, intron 10 of 14) -3138 ENSMUSG00000028188.13 ENSMUSG00000028188 ENSMUST00000093951 Spata1 protein_coding Interval_135986 chr6 49250766 49252416 + 0 NA intron (ENSMUSG00000029817.11, intron 2 of 6) protein_coding-intron (ENSMUSG00000029817.11, intron 2 of 7) -3260 ENSMUSG00000107962.1 ENSMUSG00000107962 ENSMUST00000204899 Gm43980 TEC Interval_102872 chr3 32435023 32435754 + 0 NA promoter-TSS (ENSMUSG00000027665.13) protein_coding-promoter-TSS (ENSMUSG00000027665.13) -19199 ENSMUSG00000103039.1 ENSMUSG00000103039 ENSMUST00000192994 Gm37123 TEC Interval_145021 chr7 29475067 29476262 + 0 NA intron (ENSMUSG00000030583.16, intron 1 of 2) protein_coding-intron (ENSMUSG00000030583.16, intron 2 of 22) -48879 ENSMUSG00000074224.3 ENSMUSG00000074224 ENSMUST00000098602 4932431P20Rik transcribed_unitary_pseudogene Interval_40643 chr12 106282514 106283453 + 0 NA Intergenic Intergenic -44385 ENSMUSG00000091280.1 ENSMUSG00000091280 ENSMUST00000164367 Gm17032 lincRNA Interval_143937 chr7 18222799 18223717 + 0 NA Intergenic Intergenic -6519 ENSMUSG00000108798.1 ENSMUSG00000108798 ENSMUST00000206656 Gm9521 processed_pseudogene Interval_141116 chr6 125081407 125082475 + 0 NA TTS (ENSMUSG00000067714.13) protein_coding-TTS (ENSMUSG00000067714.13) -1496 ENSMUSG00000107761.1 ENSMUSG00000107761 ENSMUST00000203956 2010008C14Rik TEC Interval_77263 chr17 87640707 87640929 + 0 NA TTS (ENSMUSG00000045394.9) protein_coding-TTS (ENSMUSG00000045394.9) 4839 ENSMUSG00000045394.9 ENSMUSG00000045394 ENSMUST00000234623 Epcam protein_coding Interval_128437 chr5 113310196 113311100 + 0 NA promoter-TSS (ENSMUSG00000042216.13) protein_coding-promoter-TSS (ENSMUSG00000042216.13) 11005 ENSMUSG00000104705.1 ENSMUSG00000104705 ENSMUST00000199950 4930405N21Rik TEC Interval_140135 chr6 114700850 114701328 + 0 NA intron (ENSMUSG00000030314.16, intron 8 of 16) protein_coding-intron (ENSMUSG00000030314.16, intron 9 of 18) 17805 ENSMUSG00000030314.16 ENSMUSG00000030314 ENSMUST00000182934 Atg7 protein_coding Interval_44993 chr13 51202147 51204234 + 0 NA promoter-TSS (ENSMUSG00000091383.2) processed_pseudogene-promoter-TSS (ENSMUSG00000091383.2) -125 ENSMUSG00000091383.2 ENSMUSG00000091383 ENSMUST00000091708 Hist1h2al processed_pseudogene Interval_13782 chr10 22066516 22066933 + 0 NA exon (ENSMUSG00000069712.5, exon 1 of 1) protein_coding-exon (ENSMUSG00000069712.5, exon 1 of 1) 1355 ENSMUSG00000069712.5 ENSMUSG00000069712 ENSMUST00000092672 4930444G20Rik protein_coding Interval_91364 chr2 38286615 38288639 + 0 NA promoter-TSS (ENSMUSG00000035392.17) protein_coding-promoter-TSS (ENSMUSG00000035392.17) 2320 ENSMUSG00000087294.2 ENSMUSG00000087294 ENSMUST00000132692 Gm13556 antisense Interval_33162 chr11 114843953 114846821 + 0 NA Intergenic Intergenic -6153 ENSMUSG00000051043.16 ENSMUSG00000051043 ENSMUST00000152314 Gprc5c protein_coding Interval_136484 chr6 54867143 54867824 + 0 NA intron (ENSMUSG00000058446.14, intron 3 of 3) protein_coding-intron (ENSMUSG00000058446.14, intron 2 of 4) -34939 ENSMUSG00000107841.1 ENSMUSG00000107841 ENSMUST00000204539 Gm44185 TEC Interval_64077 chr16 7345877 7346212 + 0 NA intron (ENSMUSG00000008658.16, intron 8 of 12) protein_coding-intron (ENSMUSG00000008658.16, intron 10 of 14) 152297 ENSMUSG00000008658.16 ENSMUSG00000008658 ENSMUST00000231031 Rbfox1 protein_coding Interval_7885 chr1 134375480 134376359 + 0 NA Intergenic Intergenic -10021 ENSMUSG00000050526.5 ENSMUSG00000050526 ENSMUST00000162187 Mgat4f protein_coding Interval_104672 chr3 69292851 69293052 + 0 NA Intergenic Intergenic 27634 ENSMUSG00000091315.1 ENSMUSG00000091315 ENSMUST00000164501 Gm17214 processed_pseudogene Interval_168609 chr9 84126926 84127274 + 0 NA Intergenic Intergenic -61255 ENSMUSG00000077666.1 ENSMUSG00000077666 ENSMUST00000104478 Gm26146 snRNA Interval_118398 chr4 131125563 131127269 + 0 NA Intergenic Intergenic -112861 ENSMUSG00000088041.1 ENSMUSG00000088041 ENSMUST00000157416 Gm25261 snoRNA Interval_3395 chr1 57948211 57949481 + 0 NA TTS (ENSMUSG00000038305.15) protein_coding-TTS (ENSMUSG00000038305.15) 14135 ENSMUSG00000054770.16 ENSMUSG00000054770 ENSMUST00000160130 Kctd18 protein_coding Interval_155510 chr8 33991141 33993665 + 0 NA Intergenic Intergenic -5203 ENSMUSG00000110614.1 ENSMUSG00000110614 ENSMUST00000212738 Gm45817 TEC Interval_94763 chr2 94087804 94088050 + 0 NA intron (ENSMUSG00000027195.10, intron 2 of 9) protein_coding-intron (ENSMUSG00000027195.10, intron 3 of 10) -21163 ENSMUSG00000027195.10 ENSMUSG00000027195 ENSMUST00000141955 Hsd17b12 protein_coding Interval_164446 chr9 37081742 37082882 + 0 NA intron (ENSMUSG00000035934.16, intron 2 of 4) protein_coding-intron (ENSMUSG00000035934.16, intron 2 of 12) -36344 ENSMUSG00000110722.1 ENSMUSG00000110722 ENSMUST00000215174 Gm48716 antisense Interval_49041 chr13 107182256 107183116 + 0 NA Intergenic Intergenic 97505 ENSMUSG00000114475.1 ENSMUSG00000114475 ENSMUST00000223896 Gm2726 processed_pseudogene Interval_164600 chr9 39919944 39920645 + 0 NA Intergenic Intergenic -1775 ENSMUSG00000111154.1 ENSMUSG00000111154 ENSMUST00000214478 Gm47229 processed_pseudogene Interval_141930 chr6 135496470 135496718 + 0 NA Intergenic Intergenic -87598 ENSMUSG00000065187.1 ENSMUSG00000065187 ENSMUST00000083253 Gm25136 snoRNA Interval_82328 chr18 70706130 70706419 + 0 NA exon (ENSMUSG00000118309.1, exon 2 of 4) lincRNA-exon (ENSMUSG00000118309.1, exon 2 of 4) 223 ENSMUSG00000118309.1 ENSMUSG00000118309 ENSMUST00000237754 Gm50261 lincRNA Interval_131796 chr5 139944002 139945323 + 0 NA intron (ENSMUSG00000048988.8, intron 1 of 1) protein_coding-intron (ENSMUSG00000048988.8, intron 1 of 1) 19129 ENSMUSG00000106090.1 ENSMUSG00000106090 ENSMUST00000196164 Gm43704 processed_pseudogene Interval_120039 chr4 141484000 141484305 + 0 NA TTS (ENSMUSG00000040761.16) protein_coding-TTS (ENSMUSG00000040761.16) 4160 ENSMUSG00000040761.16 ENSMUSG00000040761 ENSMUST00000152081 Spen protein_coding Interval_148477 chr7 81583422 81584227 + 0 NA intron (ENSMUSG00000045795.10, intron 3 of 10) protein_coding-intron (ENSMUSG00000045795.10, intron 3 of 9) -7070 ENSMUSG00000109428.1 ENSMUSG00000109428 ENSMUST00000208537 Gm45698 TEC Interval_79392 chr18 31608910 31610391 + 0 NA exon (ENSMUSG00000024259.9, exon 1 of 8) protein_coding-exon (ENSMUSG00000024259.9, exon 1 of 8) 138 ENSMUSG00000092124.1 ENSMUSG00000092124 ENSMUST00000164667 B930094E09Rik protein_coding Interval_117554 chr4 124646334 124647179 + 0 NA intron (ENSMUSG00000098760.1, intron 1 of 1) antisense-intron (ENSMUSG00000098760.1, intron 1 of 1) -10051 ENSMUSG00000090125.3 ENSMUSG00000090125 ENSMUST00000053491 Pou3f1 protein_coding Interval_170296 chr9 106759624 106760055 + 0 NA intron (ENSMUSG00000040661.6, intron 1 of 21) protein_coding-intron (ENSMUSG00000040661.6, intron 1 of 21) 29337 ENSMUSG00000040661.6 ENSMUSG00000040661 ENSMUST00000191300 Rad54l2 protein_coding Interval_40823 chr12 108673004 108673447 + 0 NA intron (ENSMUSG00000021262.15, intron 3 of 12) protein_coding-intron (ENSMUSG00000021262.15, intron 3 of 13) -12872 ENSMUSG00000021262.15 ENSMUSG00000021262 ENSMUST00000223548 Evl protein_coding Interval_58555 chr15 36053277 36053448 + 0 NA intron (ENSMUSG00000037627.16, intron 15 of 27) protein_coding-intron (ENSMUSG00000037627.16, intron 4 of 6) -12683 ENSMUSG00000037627.16 ENSMUSG00000037627 ENSMUST00000164955 Rgs22 protein_coding Interval_15720 chr10 54667506 54668629 + 0 NA Intergenic Intergenic 3637 ENSMUSG00000112882.1 ENSMUSG00000112882 ENSMUST00000218122 Gm47970 processed_pseudogene Interval_34049 chr11 120189263 120190596 + 0 NA promoter-TSS (ENSMUSG00000075389.3) processed_transcript-promoter-TSS (ENSMUSG00000075389.3) -1178 ENSMUSG00000075389.3 ENSMUSG00000075389 ENSMUST00000145437 2810410L24Rik processed_transcript Interval_123760 chr5 35286430 35286666 + 0 NA Intergenic Intergenic 8229 ENSMUSG00000045318.6 ENSMUSG00000045318 ENSMUST00000049545 Adra2c protein_coding Interval_153138 chr7 141607983 141608270 + 0 NA intron (ENSMUSG00000002957.11, intron 6 of 21) protein_coding-intron (ENSMUSG00000002957.11, intron 6 of 21) 5621 ENSMUSG00000097170.1 ENSMUSG00000097170 ENSMUST00000181275 Gm16982 antisense Interval_155086 chr8 26340682 26340894 + 0 NA intron (ENSMUSG00000109682.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000109682.1, intron 1 of 2) -28454 ENSMUSG00000110229.1 ENSMUSG00000110229 ENSMUST00000209523 Gm31784 lincRNA Interval_167546 chr9 70375067 70375348 + 0 NA intron (ENSMUSG00000032220.10, intron 23 of 28) protein_coding-intron (ENSMUSG00000032220.10, intron 22 of 27) 30546 ENSMUSG00000093763.1 ENSMUSG00000093763 ENSMUST00000176002 Mir5626 miRNA Interval_80463 chr18 42387671 42388236 + 0 NA Intergenic Intergenic -7122 ENSMUSG00000024497.4 ENSMUSG00000024497 ENSMUST00000237247 Pou4f3 protein_coding Interval_35633 chr12 26354385 26354759 + 0 NA intron (ENSMUSG00000114048.1, intron 1 of 4) protein_coding-intron (ENSMUSG00000020642.13, intron 3 of 9) 7855 ENSMUSG00000114048.1 ENSMUSG00000114048 ENSMUST00000221235 4930549C15Rik antisense Interval_43782 chr13 36393235 36393737 + 0 NA intron (ENSMUSG00000021420.13, intron 1 of 2) protein_coding-intron (ENSMUSG00000021420.13, intron 5 of 6) 65794 ENSMUSG00000114714.1 ENSMUSG00000114714 ENSMUST00000224213 Gm48763 TEC Interval_6602 chr1 118150013 118150287 + 0 NA Intergenic Intergenic -26392 ENSMUSG00000102030.1 ENSMUSG00000102030 ENSMUST00000186264 Gm29106 protein_coding Interval_147131 chr7 63696929 63697212 + 0 NA exon (ENSMUSG00000033510.14, exon 6 of 14) protein_coding-exon (ENSMUSG00000033510.14, exon 6 of 14) 46255 ENSMUSG00000033510.14 ENSMUSG00000033510 ENSMUST00000177511 Otud7a protein_coding Interval_94124 chr2 84527800 84528154 + 0 NA intron (ENSMUSG00000087362.7, intron 1 of 2) lincRNA-intron (ENSMUSG00000087362.7, intron 1 of 2) 3345 ENSMUSG00000087362.7 ENSMUSG00000087362 ENSMUST00000139492 Gm13710 lincRNA Interval_55558 chr14 92174952 92175247 + 0 NA Intergenic Intergenic -58406 ENSMUSG00000115308.1 ENSMUSG00000115308 ENSMUST00000228682 Gm48944 processed_pseudogene Interval_41976 chr13 5831700 5832170 + 0 NA Intergenic Intergenic -10077 ENSMUSG00000080562.2 ENSMUSG00000080562 ENSMUST00000116912 Gm26043 miRNA Interval_65789 chr16 28862391 28862935 + 0 NA intron (ENSMUSG00000051065.9, intron 1 of 1) protein_coding-intron (ENSMUSG00000051065.9, intron 1 of 1) -26296 ENSMUSG00000051065.9 ENSMUSG00000051065 ENSMUST00000232571 Mb21d2 protein_coding Interval_5197 chr1 86415599 86416793 + 0 NA intron (ENSMUSG00000026237.6, intron 2 of 3) protein_coding-intron (ENSMUSG00000026237.6, intron 2 of 3) -10133 ENSMUSG00000036574.5 ENSMUSG00000036574 ENSMUST00000046004 Tex44 protein_coding Interval_72215 chr17 28615190 28616185 + 0 NA intron (ENSMUSG00000004865.16, intron 2 of 14) protein_coding-intron (ENSMUSG00000004865.16, intron 2 of 15) 6796 ENSMUSG00000004865.16 ENSMUSG00000004865 ENSMUST00000114767 Srpk1 protein_coding Interval_38695 chr12 81140700 81141593 + 0 NA intron (ENSMUSG00000021136.13, intron 5 of 11) protein_coding-intron (ENSMUSG00000021136.13, intron 5 of 12) -25005 ENSMUSG00000092673.1 ENSMUSG00000092673 ENSMUST00000174932 Mir3067 miRNA Interval_71 GL456212.1 142385 143107 + 0 NA NA NA NA NA Interval_129522 chr5 120696452 120697480 + 0 NA intron (ENSMUSG00000029603.15, intron 2 of 9) protein_coding-intron (ENSMUSG00000029603.15, intron 2 of 9) -14887 ENSMUSG00000029603.15 ENSMUSG00000029603 ENSMUST00000124079 Dtx1 protein_coding Interval_4212 chr1 71643046 71643861 + 0 NA intron (ENSMUSG00000026193.15, intron 6 of 43) protein_coding-intron (ENSMUSG00000026193.15, intron 6 of 45) -9435 ENSMUSG00000073652.10 ENSMUSG00000073652 ENSMUST00000125934 Apol7d antisense Interval_120368 chr4 148149424 148152376 + 0 NA intron (ENSMUSG00000055401.14, intron 1 of 5) protein_coding-intron (ENSMUSG00000055401.14, intron 1 of 5) 1235 ENSMUSG00000055401.14 ENSMUSG00000055401 ENSMUST00000132083 Fbxo6 protein_coding Interval_44463 chr13 44977734 44978068 + 0 NA intron (ENSMUSG00000057531.14, intron 4 of 8) protein_coding-intron (ENSMUSG00000057531.14, intron 5 of 9) 24151 ENSMUSG00000057531.14 ENSMUSG00000057531 ENSMUST00000223524 Dtnbp1 protein_coding Interval_54507 chr14 70333770 70334774 + 0 NA promoter-TSS (ENSMUSG00000022094.15) protein_coding-promoter-TSS (ENSMUSG00000022094.15) -23032 ENSMUSG00000022094.15 ENSMUSG00000022094 ENSMUST00000142598 Slc39a14 protein_coding Interval_133070 chr5 149635721 149636848 + 0 NA promoter-TSS (ENSMUSG00000029657.15) protein_coding-promoter-TSS (ENSMUSG00000029657.15) 54 ENSMUSG00000029657.15 ENSMUSG00000029657 ENSMUST00000201666 Hsph1 protein_coding Interval_110382 chr3 157583260 157583502 + 0 NA intron (ENSMUSG00000040016.16, intron 1 of 1) protein_coding-intron (ENSMUSG00000040016.16, intron 1 of 2) 16481 ENSMUSG00000040016.16 ENSMUSG00000040016 ENSMUST00000173533 Ptger3 protein_coding Interval_38475 chr12 79287588 79287801 + 0 NA exon (ENSMUSG00000066440.5, exon 5 of 42) protein_coding-exon (ENSMUSG00000066440.5, exon 5 of 42) -39659 ENSMUSG00000059060.15 ENSMUSG00000059060 ENSMUST00000221257 Rad51b protein_coding Interval_63216 chr15 99784360 99785055 + 0 NA promoter-TSS (ENSMUSG00000023022.14) protein_coding-promoter-TSS (ENSMUSG00000023022.14) 18419 ENSMUSG00000065643.1 ENSMUSG00000065643 ENSMUST00000083709 Gm25897 snRNA Interval_168048 chr9 75597108 75597803 + 0 NA intron (ENSMUSG00000032186.15, intron 1 of 6) protein_coding-intron (ENSMUSG00000032186.15, intron 1 of 9) -12346 ENSMUSG00000110895.1 ENSMUSG00000110895 ENSMUST00000214120 Gm48822 TEC Interval_14376 chr10 31830302 31830486 + 0 NA intron (ENSMUSG00000069670.8, intron 4 of 6) protein_coding-intron (ENSMUSG00000069670.8, intron 4 of 6) -37518 ENSMUSG00000112866.1 ENSMUSG00000112866 ENSMUST00000219333 Gm47704 TEC Interval_124227 chr5 41754554 41756206 + 0 NA Intergenic Intergenic 9121 ENSMUSG00000049691.8 ENSMUSG00000049691 ENSMUST00000060820 Nkx3-2 protein_coding Interval_128349 chr5 112671670 112672714 + 0 NA Intergenic Intergenic -3183 ENSMUSG00000104807.1 ENSMUSG00000104807 ENSMUST00000197981 Gm42865 lincRNA Interval_172959 chrX 57935705 57936347 + 0 NA Intergenic Intergenic -53447 ENSMUSG00000093905.1 ENSMUSG00000093905 ENSMUST00000082977 Gm25023 snRNA Interval_68081 chr16 64884064 64886354 + 0 NA Intergenic Intergenic -26064 ENSMUSG00000097999.1 ENSMUSG00000097999 ENSMUST00000182707 Gm9061 processed_pseudogene Interval_93055 chr2 69857828 69858027 + 0 NA Intergenic Intergenic -3635 ENSMUSG00000068882.13 ENSMUSG00000068882 ENSMUST00000132603 Ssb protein_coding Interval_37643 chr12 70763581 70764322 + 0 NA intron (ENSMUSG00000113900.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000113900.1, intron 1 of 2) 61394 ENSMUSG00000113900.1 ENSMUSG00000113900 ENSMUST00000222338 Gm40437 lincRNA Interval_97781 chr2 143999219 143999457 + 0 NA intron (ENSMUSG00000027422.15, intron 1 of 2) protein_coding-intron (ENSMUSG00000027422.15, intron 1 of 23) -33764 ENSMUSG00000037307.11 ENSMUSG00000037307 ENSMUST00000110032 Banf2 protein_coding Interval_78577 chr18 14861716 14863275 + 0 NA intron (ENSMUSG00000054321.7, intron 14 of 14) protein_coding-intron (ENSMUSG00000054321.7, intron 14 of 14) 31827 ENSMUSG00000117530.1 ENSMUSG00000117530 ENSMUST00000234669 Gm21055 processed_pseudogene Interval_10328 chr1 169438048 169438518 + 0 NA Intergenic Intergenic 15586 ENSMUSG00000058622.1 ENSMUSG00000058622 ENSMUST00000076828 Gm5265 processed_pseudogene Interval_10981 chr1 177744375 177745731 + 0 NA intron (ENSMUSG00000015962.5, intron 4 of 5) protein_coding-intron (ENSMUSG00000015962.5, intron 4 of 5) 15239 ENSMUSG00000015962.5 ENSMUSG00000015962 ENSMUST00000016106 1700016C15Rik protein_coding Interval_91314 chr2 37718750 37719432 + 0 NA Intergenic Intergenic -30807 ENSMUSG00000092958.1 ENSMUSG00000092958 ENSMUST00000175217 Mir5128 miRNA Interval_3062 chr1 52803345 52803543 + 0 NA intron (ENSMUSG00000026102.9, intron 1 of 3) protein_coding-intron (ENSMUSG00000026102.9, intron 1 of 5) -3956 ENSMUSG00000026102.9 ENSMUSG00000026102 ENSMUST00000159725 Inpp1 protein_coding Interval_163481 chr9 21646484 21647014 + 0 NA intron (ENSMUSG00000032187.16, intron 11 of 33) protein_coding-intron (ENSMUSG00000032187.16, intron 11 of 33) 30485 ENSMUSG00000032187.16 ENSMUSG00000032187 ENSMUST00000172996 Smarca4 protein_coding Interval_119504 chr4 137984458 137984938 + 0 NA Intergenic Intergenic -8815 ENSMUSG00000028760.16 ENSMUSG00000028760 ENSMUST00000148074 Eif4g3 protein_coding Interval_151896 chr7 127391793 127394280 + 0 NA exon (ENSMUSG00000078580.3, exon 2 of 3) protein_coding-exon (ENSMUSG00000078580.3, exon 2 of 3) 583 ENSMUSG00000078580.3 ENSMUSG00000078580 ENSMUST00000106303 E430018J23Rik protein_coding Interval_31248 chr11 99117894 99118674 + 0 NA Intergenic Intergenic 36793 ENSMUSG00000037944.8 ENSMUSG00000037944 ENSMUST00000103134 Ccr7 protein_coding Interval_122286 chr5 20944916 20945736 + 0 NA exon (ENSMUSG00000039968.9, exon 1 of 3) protein_coding-exon (ENSMUSG00000039968.9, exon 1 of 3) -5663 ENSMUSG00000101013.1 ENSMUSG00000101013 ENSMUST00000190567 A630072M18Rik antisense Interval_20594 chr10 119263334 119263631 + 0 NA Intergenic Intergenic -50873 ENSMUSG00000020114.12 ENSMUSG00000020114 ENSMUST00000126373 Cand1 protein_coding Interval_59511 chr15 54813444 54813664 + 0 NA Intergenic Intergenic -48041 ENSMUSG00000098237.1 ENSMUSG00000098237 ENSMUST00000182543 Gm7577 processed_pseudogene Interval_121278 chr4 154674118 154675221 + 0 NA Intergenic Intergenic -6802 ENSMUSG00000051276.4 ENSMUSG00000051276 ENSMUST00000060062 Actrt2 protein_coding Interval_161499 chr8 120744290 120744746 + 0 NA promoter-TSS (ENSMUSG00000041515.10) protein_coding-promoter-TSS (ENSMUSG00000041515.10) 8159 ENSMUSG00000041515.10 ENSMUSG00000041515 ENSMUST00000160594 Irf8 protein_coding Interval_45704 chr13 57070408 57070970 + 0 NA Intergenic Intergenic -139741 ENSMUSG00000077279.1 ENSMUSG00000077279 ENSMUST00000104091 Gm22777 snoRNA Interval_49784 chr13 115107409 115107755 + 0 NA Intergenic Intergenic -5853 ENSMUSG00000042284.10 ENSMUSG00000042284 ENSMUST00000224541 Itga1 protein_coding Interval_76616 chr17 82538760 82538933 + 0 NA promoter-TSS (ENSMUSG00000073371.4) processed_pseudogene-promoter-TSS (ENSMUSG00000073371.4) -414 ENSMUSG00000073371.4 ENSMUSG00000073371 ENSMUST00000097278 Gm6594 processed_pseudogene Interval_169885 chr9 102734051 102734255 + 0 NA TTS (ENSMUSG00000032531.15) protein_coding-TTS (ENSMUSG00000032531.15) -5495 ENSMUSG00000093812.1 ENSMUSG00000093812 ENSMUST00000178539 Gm5627 lincRNA Interval_8282 chr1 136918724 136918969 + 0 NA intron (ENSMUSG00000026398.14, intron 6 of 8) protein_coding-intron (ENSMUSG00000026398.14, intron 6 of 8) 30327 ENSMUSG00000026398.14 ENSMUSG00000026398 ENSMUST00000195428 Nr5a2 protein_coding Interval_124687 chr5 53279354 53280730 + 0 NA Intergenic Intergenic -1768 ENSMUSG00000106981.1 ENSMUSG00000106981 ENSMUST00000200940 Gm45495 lincRNA Interval_2683 chr1 43306781 43307150 + 0 NA Intergenic Intergenic -4040 ENSMUSG00000099576.1 ENSMUSG00000099576 ENSMUST00000189899 Gm29040 lincRNA Interval_68730 chr16 85130110 85130346 + 0 NA intron (ENSMUSG00000022892.11, intron 1 of 13) protein_coding-intron (ENSMUSG00000022892.11, intron 1 of 15) -18601 ENSMUSG00000114988.1 ENSMUSG00000114988 ENSMUST00000227036 Gm49226 antisense Interval_62278 chr15 89409787 89410748 + 0 NA promoter-TSS (ENSMUSG00000078938.9) protein_coding-promoter-TSS (ENSMUSG00000078938.9) 236 ENSMUSG00000078938.9 ENSMUSG00000078938 ENSMUST00000167959 Syce3 protein_coding Interval_109364 chr3 139904129 139904345 + 0 NA Intergenic Intergenic -91473 ENSMUSG00000105880.1 ENSMUSG00000105880 ENSMUST00000197774 Gm43678 lincRNA Interval_11313 chr1 180894029 180895035 + 0 NA promoter-TSS (ENSMUSG00000066652.5) protein_coding-promoter-TSS (ENSMUSG00000066652.5) 74 ENSMUSG00000066652.5 ENSMUSG00000066652 ENSMUST00000155546 Lefty2 protein_coding Interval_45620 chr13 56295703 56297007 + 0 NA promoter-TSS (ENSMUSG00000021508.11) protein_coding-promoter-TSS (ENSMUSG00000021508.11) -50 ENSMUSG00000021508.11 ENSMUSG00000021508 ENSMUST00000021970 Cxcl14 protein_coding Interval_136542 chr6 55383933 55384590 + 0 NA intron (ENSMUSG00000004654.6, intron 9 of 12) protein_coding-intron (ENSMUSG00000004654.6, intron 9 of 12) 7966 ENSMUSG00000004654.6 ENSMUSG00000004654 ENSMUST00000203241 Ghrhr protein_coding Interval_14303 chr10 30683755 30683988 + 0 NA intron (ENSMUSG00000039697.16, intron 8 of 13) protein_coding-intron (ENSMUSG00000039697.16, intron 10 of 15) -10644 ENSMUSG00000088600.1 ENSMUSG00000088600 ENSMUST00000157975 Gm24189 rRNA Interval_14607 chr10 36973940 36975360 + 0 NA promoter-TSS (ENSMUSG00000019777.16) protein_coding-promoter-TSS (ENSMUSG00000019777.16) -17116 ENSMUSG00000019777.16 ENSMUSG00000019777 ENSMUST00000123010 Hdac2 protein_coding Interval_156504 chr8 48802259 48803380 + 0 NA intron (ENSMUSG00000031561.16, intron 1 of 2) protein_coding-intron (ENSMUSG00000031561.16, intron 1 of 2) -40903 ENSMUSG00000100706.6 ENSMUSG00000100706 ENSMUST00000188936 Gm19744 processed_transcript Interval_21868 chr11 4848836 4850026 + 0 NA promoter-TSS (ENSMUSG00000009073.16) protein_coding-promoter-TSS (ENSMUSG00000009073.16) -306 ENSMUSG00000009073.16 ENSMUSG00000009073 ENSMUST00000172305 Nf2 protein_coding Interval_25725 chr11 51150048 51150775 + 0 NA Intergenic Intergenic 7879 ENSMUSG00000083312.1 ENSMUSG00000083312 ENSMUST00000120114 Olfr1374-ps1 unprocessed_pseudogene Interval_121940 chr5 10640946 10641174 + 0 NA Intergenic Intergenic 27483 ENSMUSG00000106274.1 ENSMUSG00000106274 ENSMUST00000199669 Gm42828 processed_pseudogene Interval_130999 chr5 134485350 134486548 + 0 NA promoter-TSS (ENSMUSG00000106802.1) TEC-promoter-TSS (ENSMUSG00000106802.1) -503 ENSMUSG00000106802.1 ENSMUSG00000106802 ENSMUST00000200763 Gm42885 TEC Interval_152634 chr7 135602914 135603302 + 0 NA intron (ENSMUSG00000041836.10, intron 2 of 20) protein_coding-intron (ENSMUSG00000041836.10, intron 2 of 20) 9720 ENSMUSG00000041836.10 ENSMUSG00000041836 ENSMUST00000211092 Ptpre protein_coding Interval_119735 chr4 139596209 139596394 + 0 NA intron (ENSMUSG00000041025.15, intron 1 of 8) protein_coding-intron (ENSMUSG00000041025.15, intron 3 of 10) -6885 ENSMUSG00000094439.1 ENSMUSG00000094439 ENSMUST00000178644 Gm21969 protein_coding Interval_132298 chr5 144006216 144006421 + 0 NA intron (ENSMUSG00000029617.10, intron 6 of 14) protein_coding-intron (ENSMUSG00000029617.10, intron 6 of 14) -2159 ENSMUSG00000029617.10 ENSMUSG00000029617 ENSMUST00000199922 Ccz1 protein_coding Interval_75728 chr17 70900468 70901286 + 0 NA intron (ENSMUSG00000097154.2, intron 1 of 2) lincRNA-intron (ENSMUSG00000097154.2, intron 1 of 2) -7968 ENSMUSG00000117121.1 ENSMUSG00000117121 ENSMUST00000233300 Gm49902 TEC Interval_117041 chr4 119173650 119174589 + 0 NA promoter-TSS (ENSMUSG00000045268.13) protein_coding-promoter-TSS (ENSMUSG00000045268.13) -263 ENSMUSG00000045268.13 ENSMUSG00000045268 ENSMUST00000154226 Zfp691 protein_coding Interval_58587 chr15 36399891 36400563 + 0 NA Intergenic Intergenic -10055 ENSMUSG00000114981.1 ENSMUSG00000114981 ENSMUST00000226850 Gm34093 lincRNA Interval_89921 chr2 26500657 26504487 + 0 NA intron (ENSMUSG00000026923.15, intron 1 of 1) protein_coding-intron (ENSMUSG00000026923.15, intron 1 of 33) -32453 ENSMUSG00000098548.1 ENSMUSG00000098548 ENSMUST00000183922 Mir6996 miRNA Interval_136078 chr6 50545204 50546435 + 0 NA Intergenic Intergenic -5785 ENSMUSG00000077357.1 ENSMUSG00000077357 ENSMUST00000104169 Gm26289 snoRNA Interval_136202 chr6 52011981 52013660 + 0 NA promoter-TSS (ENSMUSG00000059182.7) protein_coding-promoter-TSS (ENSMUSG00000059182.7) 219 ENSMUSG00000108244.1 ENSMUSG00000108244 ENSMUST00000203453 Gm44077 lincRNA Interval_98643 chr2 153756204 153756595 + 0 NA TTS (ENSMUSG00000027479.14) protein_coding-TTS (ENSMUSG00000027479.14) 14797 ENSMUSG00000027479.14 ENSMUSG00000027479 ENSMUST00000123570 Mapre1 protein_coding Interval_161947 chr8 123976875 123977113 + 0 NA intron (ENSMUSG00000031974.8, intron 1 of 12) protein_coding-intron (ENSMUSG00000031974.8, intron 1 of 12) 6128 ENSMUSG00000031974.8 ENSMUSG00000031974 ENSMUST00000075578 Abcb10 protein_coding Interval_81101 chr18 53888864 53889051 + 0 NA intron (ENSMUSG00000073563.3, intron 1 of 12) protein_coding-intron (ENSMUSG00000073563.3, intron 1 of 12) 26769 ENSMUSG00000073563.3 ENSMUSG00000073563 ENSMUST00000236399 Csnk1g3 protein_coding Interval_9516 chr1 158309957 158310174 + 0 NA intron (ENSMUSG00000004031.13, intron 2 of 7) protein_coding-intron (ENSMUSG00000004031.13, intron 1 of 7) 46164 ENSMUSG00000004031.13 ENSMUSG00000004031 ENSMUST00000192709 Brinp2 protein_coding Interval_128319 chr5 112520692 112522133 + 0 NA intron (ENSMUSG00000058153.15, intron 1 of 14) protein_coding-intron (ENSMUSG00000058153.15, intron 1 of 16) 55456 ENSMUSG00000058153.15 ENSMUSG00000058153 ENSMUST00000212758 Sez6l protein_coding Interval_60405 chr15 73547302 73547563 + 0 NA exon (ENSMUSG00000036661.14, exon 13 of 23) protein_coding-exon (ENSMUSG00000036661.14, exon 13 of 23) 34760 ENSMUSG00000036661.14 ENSMUSG00000036661 ENSMUST00000160727 Dennd3 protein_coding Interval_35840 chr12 31116042 31116277 + 0 NA Intergenic Intergenic -15513 ENSMUSG00000112799.1 ENSMUSG00000112799 ENSMUST00000219793 Gm48100 processed_pseudogene Interval_68394 chr16 75695890 75696764 + 0 NA intron (ENSMUSG00000116643.2, intron 5 of 7) transcribed_unprocessed_pseudogene-intron (ENSMUSG00000116643.2, intron 3 of 4) 21264 ENSMUSG00000116643.2 ENSMUSG00000116643 ENSMUST00000231519 Gm30162 transcribed_unprocessed_pseudogene Interval_43232 chr13 26124694 26124891 + 0 NA Intergenic Intergenic -69909 ENSMUSG00000084358.1 ENSMUSG00000084358 ENSMUST00000119264 Gm11352 processed_pseudogene Interval_33544 chr11 117121407 117121642 + 0 NA intron (ENSMUSG00000020823.16, intron 2 of 11) protein_coding-intron (ENSMUSG00000020823.16, intron 2 of 16) -10966 ENSMUSG00000089343.1 ENSMUSG00000089343 ENSMUST00000158718 Gm22667 misc_RNA Interval_51566 chr14 30317820 30318601 + 0 NA intron (ENSMUSG00000015968.18, intron 3 of 40) protein_coding-intron (ENSMUSG00000015968.18, intron 3 of 48) 66144 ENSMUSG00000114670.1 ENSMUSG00000114670 ENSMUST00000224661 Gm18072 processed_pseudogene Interval_75170 chr17 64272921 64273806 + 0 NA Intergenic Intergenic 48252 ENSMUSG00000080455.1 ENSMUSG00000080455 ENSMUST00000116805 Gm24194 miRNA Interval_37320 chr12 65110831 65111750 + 0 NA intron (ENSMUSG00000055884.8, intron 14 of 22) protein_coding-intron (ENSMUSG00000055884.8, intron 14 of 22) -11284 ENSMUSG00000112992.1 ENSMUSG00000112992 ENSMUST00000223249 Gm47869 processed_pseudogene Interval_135796 chr6 47410104 47410461 + 0 NA Intergenic Intergenic 22807 ENSMUSG00000107853.1 ENSMUSG00000107853 ENSMUST00000203098 Gm18584 processed_pseudogene Interval_86868 chr19 44487339 44487810 + 0 NA Intergenic Intergenic -22747 ENSMUSG00000036961.5 ENSMUSG00000036961 ENSMUST00000237970 Wnt8b protein_coding Interval_115493 chr4 99408695 99409725 + 0 NA Intergenic Intergenic 9501 ENSMUSG00000081184.1 ENSMUSG00000081184 ENSMUST00000121702 Gm12685 processed_pseudogene Interval_26030 chr11 53580717 53580993 + 0 NA intron (ENSMUSG00000018395.19, intron 5 of 17) protein_coding-intron (ENSMUSG00000018395.19, intron 5 of 16) 13458 ENSMUSG00000018395.19 ENSMUSG00000018395 ENSMUST00000130037 Kif3a protein_coding Interval_41011 chr12 110581708 110581939 + 0 NA TTS (ENSMUSG00000017843.14) protein_coding-TTS (ENSMUSG00000017843.14) -8689 ENSMUSG00000113361.1 ENSMUSG00000113361 ENSMUST00000221143 B930059L03Rik lincRNA Interval_22241 chr11 7913278 7913487 + 0 NA Intergenic Intergenic -26877 ENSMUSG00000098853.1 ENSMUSG00000098853 ENSMUST00000157263 Gm27393 snRNA Interval_159227 chr8 91961652 91962119 + 0 NA Intergenic Intergenic 29984 ENSMUSG00000109696.1 ENSMUSG00000109696 ENSMUST00000210361 Gm36670 lincRNA Interval_88896 chr2 12300853 12302292 + 0 NA promoter-TSS (ENSMUSG00000026768.10) protein_coding-promoter-TSS (ENSMUSG00000026768.10) 253 ENSMUSG00000086843.3 ENSMUSG00000086843 ENSMUST00000150037 E030013I19Rik antisense Interval_47764 chr13 92456764 92457099 + 0 NA intron (ENSMUSG00000034334.8, intron 4 of 4) protein_coding-intron (ENSMUSG00000034334.8, intron 5 of 5) 27084 ENSMUSG00000034334.8 ENSMUSG00000034334 ENSMUST00000040106 Fam151b protein_coding Interval_170768 chr9 110635045 110636169 + 0 NA promoter-TSS (ENSMUSG00000056724.15) protein_coding-promoter-TSS (ENSMUSG00000056724.15) 508 ENSMUSG00000099275.1 ENSMUSG00000099275 ENSMUST00000184024 Mir8107 miRNA Interval_21812 chr11 4494730 4495685 + 0 NA intron (ENSMUSG00000034354.17, intron 11 of 17) protein_coding-intron (ENSMUSG00000034354.17, intron 11 of 17) -6841 ENSMUSG00000034354.17 ENSMUSG00000034354 ENSMUST00000144242 Mtmr3 protein_coding Interval_117111 chr4 119630783 119632140 + 0 NA Intergenic Intergenic -6243 ENSMUSG00000023247.2 ENSMUSG00000023247 ENSMUST00000024015 Guca2a protein_coding Interval_94748 chr2 93975269 93977127 + 0 NA intron (ENSMUSG00000098004.1, intron 1 of 2) protein_coding-intron (ENSMUSG00000098004.1, intron 1 of 2) -3836 ENSMUSG00000027196.11 ENSMUSG00000027196 ENSMUST00000028621 Alkbh3os1 antisense Interval_13975 chr10 25218732 25220150 + 0 NA intron (ENSMUSG00000039166.16, intron 2 of 2) protein_coding-intron (ENSMUSG00000039166.16, intron 7 of 7) 1250 ENSMUSG00000039166.16 ENSMUSG00000039166 ENSMUST00000176231 Akap7 protein_coding Interval_105391 chr3 85937246 85938111 + 0 NA Intergenic Intergenic -13210 ENSMUSG00000077517.1 ENSMUSG00000077517 ENSMUST00000104329 Gm25876 snoRNA Interval_163069 chr9 15003380 15003869 + 0 NA exon (ENSMUSG00000031934.14, exon 5 of 5) protein_coding-exon (ENSMUSG00000031934.14, exon 5 of 5) 40173 ENSMUSG00000031934.14 ENSMUSG00000031934 ENSMUST00000169288 Panx1 protein_coding Interval_28822 chr11 78529052 78529365 + 0 NA exon (ENSMUSG00000017615.12, exon 3 of 7) protein_coding-exon (ENSMUSG00000017615.12, exon 3 of 7) 7124 ENSMUSG00000017615.12 ENSMUSG00000017615 ENSMUST00000108277 Tnfaip1 protein_coding Interval_119926 chr4 140971504 140972871 + 0 NA intron (ENSMUSG00000009863.14, intron 3 of 5) protein_coding-intron (ENSMUSG00000009863.14, intron 3 of 7) 10786 ENSMUSG00000009863.14 ENSMUSG00000009863 ENSMUST00000125780 Sdhb protein_coding Interval_30327 chr11 93643563 93644412 + 0 NA Intergenic Intergenic -6772 ENSMUSG00000082453.1 ENSMUSG00000082453 ENSMUST00000120917 Gm11502 processed_pseudogene Interval_30115 chr11 89301409 89303836 + 0 NA promoter-TSS (ENSMUSG00000048616.4) protein_coding-promoter-TSS (ENSMUSG00000048616.4) -101 ENSMUSG00000085798.1 ENSMUSG00000085798 ENSMUST00000140754 Gm2018 lincRNA Interval_23996 chr11 29246710 29247909 + 0 NA promoter-TSS (ENSMUSG00000020462.14) protein_coding-promoter-TSS (ENSMUSG00000020462.14) -241 ENSMUSG00000020462.14 ENSMUSG00000020462 ENSMUST00000127940 Cfap36 protein_coding Interval_57813 chr15 21240667 21241517 + 0 NA intron (ENSMUSG00000040452.9, intron 3 of 12) protein_coding-intron (ENSMUSG00000040452.9, intron 2 of 11) 60935 ENSMUSG00000103296.1 ENSMUSG00000103296 ENSMUST00000195204 Gm38234 TEC Interval_9060 chr1 153345694 153346402 + 0 NA Intergenic Intergenic 40616 ENSMUSG00000079138.3 ENSMUSG00000079138 ENSMUST00000110797 Gm8818 processed_pseudogene Interval_107770 chr3 113748260 113748704 + 0 NA Intergenic Intergenic 19250 ENSMUSG00000106454.1 ENSMUSG00000106454 ENSMUST00000198542 Gm17775 processed_pseudogene Interval_136223 chr6 52152453 52153205 + 0 NA Intergenic Intergenic 5488 ENSMUSG00000029844.9 ENSMUSG00000029844 ENSMUST00000120363 Hoxa1 protein_coding Interval_27734 chr11 69725723 69726627 + 0 NA Intergenic Intergenic 4409 ENSMUSG00000081333.1 ENSMUSG00000081333 ENSMUST00000120581 Gm12307 processed_pseudogene Interval_64672 chr16 14042129 14042479 + 0 NA intron (ENSMUSG00000044117.12, intron 1 of 3) protein_coding-intron (ENSMUSG00000044117.12, intron 1 of 5) -3443 ENSMUSG00000082277.2 ENSMUSG00000082277 ENSMUST00000119880 Gm15807 processed_pseudogene Interval_137015 chr6 66402228 66402838 + 0 NA Intergenic Intergenic 3787 ENSMUSG00000107631.1 ENSMUSG00000107631 ENSMUST00000203616 Gm44233 processed_pseudogene Interval_107233 chr3 104790591 104790805 + 0 NA intron (ENSMUSG00000002233.13, intron 1 of 3) protein_coding-intron (ENSMUSG00000002233.13, intron 1 of 4) 1470 ENSMUSG00000002233.13 ENSMUSG00000002233 ENSMUST00000132721 Rhoc protein_coding Interval_20032 chr10 112295912 112296147 + 0 NA intron (ENSMUSG00000035681.7, intron 2 of 4) protein_coding-intron (ENSMUSG00000035681.7, intron 2 of 4) -64888 ENSMUSG00000112564.1 ENSMUSG00000112564 ENSMUST00000219794 Gm47419 antisense Interval_172071 chrX 5949459 5950172 + 0 NA Intergenic Intergenic -34957 ENSMUSG00000081661.1 ENSMUSG00000081661 ENSMUST00000119984 Gm14450 processed_pseudogene Interval_167063 chr9 64980404 64981166 + 0 NA intron (ENSMUSG00000034263.13, intron 10 of 12) protein_coding-intron (ENSMUSG00000034263.13, intron 10 of 12) -8992 ENSMUSG00000093119.1 ENSMUSG00000093119 ENSMUST00000175378 Gm25640 miRNA Interval_94359 chr2 90482190 90482419 + 0 NA exon (ENSMUSG00000085471.1, exon 3 of 3) antisense-exon (ENSMUSG00000085471.1, exon 3 of 3) 3054 ENSMUSG00000085471.1 ENSMUSG00000085471 ENSMUST00000126953 4933423P22Rik antisense Interval_9069 chr1 153394097 153394652 + 0 NA Intergenic Intergenic 19859 ENSMUSG00000073538.10 ENSMUSG00000073538 ENSMUST00000188717 E330020D12Rik processed_transcript Interval_129336 chr5 119265294 119265708 + 0 NA Intergenic Intergenic -31744 ENSMUSG00000084548.1 ENSMUSG00000084548 ENSMUST00000122599 n-R5s175 rRNA Interval_63409 chr15 100895635 100896982 + 0 NA intron (ENSMUSG00000023033.14, intron 1 of 1) protein_coding-intron (ENSMUSG00000023033.14, intron 1 of 26) -63917 ENSMUSG00000115912.1 ENSMUSG00000115912 ENSMUST00000230694 Gm35569 lincRNA Interval_12654 chr10 4166731 4167414 + 0 NA TTS (ENSMUSG00000040675.17) protein_coding-TTS (ENSMUSG00000040675.17) -2815 ENSMUSG00000089473.1 ENSMUSG00000089473 ENSMUST00000158848 Gm25369 snoRNA Interval_127205 chr5 101299079 101300160 + 0 NA Intergenic Intergenic -5959 ENSMUSG00000105965.1 ENSMUSG00000105965 ENSMUST00000197114 Cycs-ps2 processed_pseudogene Interval_6991 chr1 121597163 121597378 + 0 NA Intergenic Intergenic -38055 ENSMUSG00000001674.11 ENSMUSG00000001674 ENSMUST00000131471 Ddx18 protein_coding Interval_68227 chr16 69892787 69893783 + 0 NA Intergenic Intergenic -32799 ENSMUSG00000063163.13 ENSMUSG00000063163 ENSMUST00000164146 Speer2 protein_coding Interval_21372 chr10 128225787 128226198 + 0 NA exon (ENSMUSG00000025389.7, exon 1 of 4) protein_coding-exon (ENSMUSG00000025389.7, exon 1 of 4) 154 ENSMUSG00000025389.7 ENSMUSG00000025389 ENSMUST00000026455 Mip protein_coding Interval_160219 chr8 107216255 107218146 + 0 NA Intergenic Intergenic 46048 ENSMUSG00000057657.4 ENSMUSG00000057657 ENSMUST00000080443 Rps18-ps3 processed_pseudogene Interval_138336 chr6 87353956 87354751 + 0 NA Intergenic Intergenic -3411 ENSMUSG00000030050.4 ENSMUSG00000030050 ENSMUST00000032129 Gkn1 protein_coding Interval_92419 chr2 59633717 59634426 + 0 NA intron (ENSMUSG00000035168.16, intron 1 of 1) protein_coding-intron (ENSMUSG00000035168.16, intron 1 of 26) -69387 ENSMUSG00000081157.1 ENSMUSG00000081157 ENSMUST00000118837 Gm13552 processed_pseudogene Interval_53706 chr14 61022488 61025148 + 0 NA intron (ENSMUSG00000060548.13, intron 3 of 5) protein_coding-intron (ENSMUSG00000060548.13, intron 3 of 9) 14073 ENSMUSG00000060548.13 ENSMUSG00000060548 ENSMUST00000225730 Tnfrsf19 protein_coding Interval_101977 chr3 14190699 14191895 + 0 NA Intergenic Intergenic 76142 ENSMUSG00000089231.1 ENSMUSG00000089231 ENSMUST00000158606 Gm23112 snoRNA Interval_97541 chr2 139591244 139591771 + 0 NA intron (ENSMUSG00000039092.9, intron 8 of 11) protein_coding-intron (ENSMUSG00000039092.9, intron 9 of 12) 3280 ENSMUSG00000098486.1 ENSMUSG00000098486 ENSMUST00000184747 Gm27385 snRNA Interval_114494 chr4 81188734 81189094 + 0 NA Intergenic Intergenic 149490 ENSMUSG00000077607.1 ENSMUSG00000077607 ENSMUST00000104419 Gm25803 snoRNA Interval_79134 chr18 24862687 24863462 + 0 NA intron (ENSMUSG00000034295.10, intron 3 of 24) protein_coding-intron (ENSMUSG00000034295.10, intron 3 of 26) 101911 ENSMUSG00000088920.1 ENSMUSG00000088920 ENSMUST00000158295 Gm24294 misc_RNA Interval_132626 chr5 146817360 146817574 + 0 NA Intergenic Intergenic -15679 ENSMUSG00000041453.12 ENSMUSG00000041453 ENSMUST00000135345 Rpl21 protein_coding Interval_95887 chr2 118046052 118046243 + 0 NA intron (ENSMUSG00000087203.7, intron 4 of 9) processed_transcript-intron (ENSMUSG00000087203.7, intron 4 of 9) 6304 ENSMUSG00000103266.1 ENSMUSG00000103266 ENSMUST00000193616 Gm36979 TEC Interval_145269 chr7 31066051 31066363 + 0 NA intron (ENSMUSG00000036560.14, intron 6 of 8) protein_coding-intron (ENSMUSG00000036560.14, intron 6 of 8) 2657 ENSMUSG00000036560.14 ENSMUSG00000036560 ENSMUST00000172001 Lgi4 protein_coding Interval_169031 chr9 90495015 90495267 + 0 NA Intergenic Intergenic 143146 ENSMUSG00000065881.1 ENSMUSG00000065881 ENSMUST00000083947 Gm22866 snRNA Interval_1630 chr1 30460142 30460362 + 0 NA Intergenic Intergenic -126855 ENSMUSG00000098883.1 ENSMUSG00000098883 ENSMUST00000184585 Gm27430 miRNA Interval_23623 chr11 23920556 23921112 + 0 NA Intergenic Intergenic 8020 ENSMUSG00000084206.1 ENSMUSG00000084206 ENSMUST00000117533 Gm12062 processed_pseudogene Interval_79242 chr18 27111102 27111439 + 0 NA Intergenic Intergenic -20083 ENSMUSG00000117646.1 ENSMUSG00000117646 ENSMUST00000234185 Gm49977 processed_pseudogene Interval_49542 chr13 112820516 112820966 + 0 NA intron (ENSMUSG00000021759.14, intron 1 of 5) protein_coding-intron (ENSMUSG00000021759.14, intron 1 of 5) 19878 ENSMUSG00000021759.14 ENSMUSG00000021759 ENSMUST00000070951 Plpp1 protein_coding Interval_147027 chr7 58668184 58669151 + 0 NA intron (ENSMUSG00000025324.8, intron 1 of 20) protein_coding-intron (ENSMUSG00000025324.8, intron 1 of 20) -6754 ENSMUSG00000109393.1 ENSMUSG00000109393 ENSMUST00000207324 Gm44936 TEC Interval_30763 chr11 96331691 96334028 + 0 NA intron (ENSMUSG00000048763.11, intron 1 of 2) protein_coding-intron (ENSMUSG00000048763.11, intron 1 of 3) -8086 ENSMUSG00000048763.11 ENSMUSG00000048763 ENSMUST00000055334 Hoxb3 protein_coding Interval_79780 chr18 35085378 35085644 + 0 NA intron (ENSMUSG00000118380.1, intron 5 of 5) processed_transcript-intron (ENSMUSG00000118380.1, intron 5 of 5) 2112 ENSMUSG00000117727.1 ENSMUSG00000117727 ENSMUST00000238134 Gm3587 lincRNA Interval_128588 chr5 114185010 114186385 + 0 NA intron (ENSMUSG00000042010.16, intron 2 of 4) protein_coding-intron (ENSMUSG00000042010.16, intron 2 of 51) 9791 ENSMUSG00000042010.16 ENSMUSG00000042010 ENSMUST00000142489 Acacb protein_coding Interval_80740 chr18 46727009 46728847 + 0 NA intron (ENSMUSG00000033022.8, intron 1 of 3) protein_coding-intron (ENSMUSG00000033022.8, intron 1 of 4) 427 ENSMUSG00000033022.8 ENSMUSG00000033022 ENSMUST00000234222 Cdo1 protein_coding Interval_164080 chr9 31346690 31346942 + 0 NA exon (ENSMUSG00000042496.18, exon 10 of 21) protein_coding-exon (ENSMUSG00000042496.18, exon 10 of 21) 33263 ENSMUSG00000042496.18 ENSMUSG00000042496 ENSMUST00000074510 Prdm10 protein_coding Interval_89820 chr2 25663213 25663778 + 0 NA Intergenic Intergenic 2573 ENSMUSG00000026937.12 ENSMUSG00000026937 ENSMUST00000143401 Lcn5 protein_coding Interval_157043 chr8 64744589 64744798 + 0 NA intron (ENSMUSG00000031605.8, intron 13 of 13) protein_coding-intron (ENSMUSG00000031605.8, intron 13 of 14) -13634 ENSMUSG00000031604.10 ENSMUSG00000031604 ENSMUST00000141021 Msmo1 protein_coding Interval_15795 chr10 56884652 56884926 + 0 NA Intergenic Intergenic 29976 ENSMUSG00000112837.1 ENSMUSG00000112837 ENSMUST00000217761 Gm48053 lincRNA Interval_103985 chr3 56182342 56184194 + 0 NA exon (ENSMUSG00000027799.12, exon 1 of 58) protein_coding-exon (ENSMUSG00000027799.12, exon 1 of 58) -15699 ENSMUSG00000105293.1 ENSMUSG00000105293 ENSMUST00000196328 Gm42843 TEC Interval_150277 chr7 109218211 109218817 + 0 NA intron (ENSMUSG00000109001.1, intron 2 of 2) lincRNA-intron (ENSMUSG00000109001.1, intron 2 of 2) 5686 ENSMUSG00000109001.1 ENSMUSG00000109001 ENSMUST00000208274 Gm45024 lincRNA Interval_78846 chr18 20945760 20946550 + 0 NA intron (ENSMUSG00000033107.6, intron 1 of 5) protein_coding-intron (ENSMUSG00000033107.6, intron 1 of 5) -15317 ENSMUSG00000033107.6 ENSMUSG00000033107 ENSMUST00000234316 Rnf125 protein_coding Interval_166770 chr9 62522852 62523842 + 0 NA intron (ENSMUSG00000041729.15, intron 1 of 2) protein_coding-intron (ENSMUSG00000041729.15, intron 1 of 11) 8318 ENSMUSG00000084540.1 ENSMUSG00000084540 ENSMUST00000122591 n-R5s84 rRNA Interval_12902 chr10 7903317 7903517 + 0 NA Intergenic Intergenic 52476 ENSMUSG00000015755.16 ENSMUSG00000015755 ENSMUST00000130322 Tab2 protein_coding Interval_162470 chr8 129196321 129196870 + 0 NA Intergenic Intergenic 37418 ENSMUSG00000071302.10 ENSMUSG00000071302 ENSMUST00000189965 2610044O15Rik8 protein_coding Interval_118448 chr4 131677665 131678772 + 0 NA promoter-TSS (ENSMUSG00000087171.1) lincRNA-promoter-TSS (ENSMUSG00000087171.1) -6077 ENSMUSG00000087171.1 ENSMUSG00000087171 ENSMUST00000138697 Gm12962 lincRNA Interval_168070 chr9 75852442 75852686 + 0 NA intron (ENSMUSG00000032179.7, intron 3 of 6) protein_coding-intron (ENSMUSG00000032179.7, intron 3 of 6) -23696 ENSMUSG00000110817.1 ENSMUSG00000110817 ENSMUST00000215680 Gm47723 TEC Interval_25382 chr11 47013573 47013786 + 0 NA intron (ENSMUSG00000020354.15, intron 6 of 7) protein_coding-intron (ENSMUSG00000020354.15, intron 6 of 7) 139266 ENSMUSG00000082818.1 ENSMUSG00000082818 ENSMUST00000122081 Gm12175 processed_pseudogene Interval_160605 chr8 110996912 110998480 + 0 NA promoter-TSS (ENSMUSG00000015023.7) protein_coding-promoter-TSS (ENSMUSG00000015023.7) 74 ENSMUSG00000015023.7 ENSMUSG00000015023 ENSMUST00000173183 Ddx19a protein_coding Interval_135034 chr6 34865606 34867484 + 0 NA promoter-TSS (ENSMUSG00000057137.9) protein_coding-promoter-TSS (ENSMUSG00000057137.9) -507 ENSMUSG00000057137.9 ENSMUSG00000057137 ENSMUST00000202764 Tmem140 protein_coding Interval_3142 chr1 53941544 53942809 + 0 NA exon (ENSMUSG00000042807.15, exon 4 of 4) protein_coding-exon (ENSMUSG00000042807.15, exon 4 of 4) -55235 ENSMUSG00000087949.1 ENSMUSG00000087949 ENSMUST00000157324 Gm24251 snRNA Interval_58542 chr15 35934425 35934932 + 0 NA intron (ENSMUSG00000014313.15, intron 3 of 3) protein_coding-intron (ENSMUSG00000014313.15, intron 3 of 3) 2491 ENSMUSG00000014313.15 ENSMUSG00000014313 ENSMUST00000227231 Cox6c protein_coding Interval_14551 chr10 35422932 35423404 + 0 NA Intergenic Intergenic 62228 ENSMUSG00000111753.1 ENSMUSG00000111753 ENSMUST00000214107 1700054O05Rik lincRNA Interval_90140 chr2 28479120 28480243 + 0 NA Intergenic Intergenic 2515 ENSMUSG00000082895.1 ENSMUSG00000082895 ENSMUST00000120702 Rpsa-ps9 processed_pseudogene Interval_91714 chr2 48607206 48607408 + 0 NA Intergenic Intergenic -150062 ENSMUSG00000086353.1 ENSMUSG00000086353 ENSMUST00000127672 Gm13481 lincRNA Interval_143697 chr7 15783272 15784061 + 0 NA Intergenic Intergenic 4494 ENSMUSG00000105410.1 ENSMUSG00000105410 ENSMUST00000197059 Gtpbp4-ps7 processed_pseudogene Interval_158272 chr8 80750381 80751253 + 0 NA Intergenic Intergenic -19874 ENSMUSG00000109584.1 ENSMUSG00000109584 ENSMUST00000210546 Gm7997 processed_pseudogene Interval_55478 chr14 88117220 88117403 + 0 NA Intergenic Intergenic 6497 ENSMUSG00000062611.4 ENSMUSG00000062611 ENSMUST00000074245 Rps3a2 processed_pseudogene Interval_77579 chr17 92212085 92212303 + 0 NA Intergenic Intergenic -26237 ENSMUSG00000117343.1 ENSMUSG00000117343 ENSMUST00000234079 Gm19145 processed_pseudogene Interval_170884 chr9 111534031 111534545 + 0 NA Intergenic Intergenic 14652 ENSMUSG00000106647.1 ENSMUSG00000106647 ENSMUST00000199378 Gm42523 lincRNA Interval_12754 chr10 4869305 4869515 + 0 NA intron (ENSMUSG00000019768.16, intron 6 of 9) protein_coding-intron (ENSMUSG00000019768.16, intron 5 of 8) 167046 ENSMUSG00000093189.1 ENSMUSG00000093189 ENSMUST00000175448 Gm25694 ribozyme Interval_156030 chr8 42931739 42932286 + 0 NA Intergenic Intergenic -153575 ENSMUSG00000109627.1 ENSMUSG00000109627 ENSMUST00000209715 Gm45590 processed_pseudogene Interval_35682 chr12 27418085 27420625 + 0 NA Intergenic Intergenic -76781 ENSMUSG00000063632.6 ENSMUSG00000063632 ENSMUST00000079063 Sox11 protein_coding Interval_98710 chr2 154452757 154453217 + 0 NA intron (ENSMUSG00000038533.15, intron 1 of 2) protein_coding-intron (ENSMUSG00000038533.15, intron 1 of 10) 16145 ENSMUSG00000038533.15 ENSMUSG00000038533 ENSMUST00000139506 Cbfa2t2 protein_coding Interval_137918 chr6 83356464 83356961 + 0 NA intron (ENSMUSG00000045160.14, intron 1 of 1) protein_coding-intron (ENSMUSG00000045160.14, intron 2 of 2) 5672 ENSMUSG00000045160.14 ENSMUSG00000045160 ENSMUST00000148875 Bola3 protein_coding Interval_111785 chr4 28870103 28870287 + 0 NA intron (ENSMUSG00000028289.12, intron 3 of 4) protein_coding-intron (ENSMUSG00000028289.12, intron 3 of 16) -55119 ENSMUSG00000086774.1 ENSMUSG00000086774 ENSMUST00000153669 Gm11915 antisense Interval_139693 chr6 107139731 107140849 + 0 NA Intergenic Intergenic -46175 ENSMUSG00000107981.1 ENSMUSG00000107981 ENSMUST00000203999 Gm6064 processed_pseudogene Interval_162324 chr8 127106146 127106492 + 0 NA intron (ENSMUSG00000025812.18, intron 1 of 17) protein_coding-intron (ENSMUSG00000025812.18, intron 1 of 23) 59407 ENSMUSG00000088710.1 ENSMUSG00000088710 ENSMUST00000158085 Gm22730 snRNA Interval_64206 chr16 9148945 9150439 + 0 NA Intergenic Intergenic -9078 ENSMUSG00000116123.1 ENSMUSG00000116123 ENSMUST00000229655 Gm49451 lincRNA Interval_40475 chr12 105085301 105086100 + 0 NA Intergenic Intergenic -49496 ENSMUSG00000113051.1 ENSMUSG00000113051 ENSMUST00000222354 Gm47672 processed_pseudogene Interval_65145 chr16 20169148 20170194 + 0 NA intron (ENSMUSG00000041215.16, intron 5 of 27) protein_coding-intron (ENSMUSG00000041215.16, intron 6 of 29) 7341 ENSMUSG00000084838.3 ENSMUSG00000084838 ENSMUST00000117664 Gm10241 processed_pseudogene Interval_115753 chr4 103353756 103354049 + 0 NA intron (ENSMUSG00000035069.3, intron 3 of 3) protein_coding-intron (ENSMUSG00000035069.3, intron 8 of 8) -28598 ENSMUSG00000086136.1 ENSMUSG00000086136 ENSMUST00000150345 Gm12718 lincRNA Interval_104554 chr3 67973796 67974023 + 0 NA intron (ENSMUSG00000102422.1, intron 1 of 10) protein_coding-intron (ENSMUSG00000051777.6, intron 1 of 3) 81677 ENSMUSG00000102422.1 ENSMUSG00000102422 ENSMUST00000182006 Iqschfp protein_coding Interval_132345 chr5 144351055 144351795 + 0 NA intron (ENSMUSG00000038859.7, intron 1 of 13) protein_coding-intron (ENSMUSG00000038859.7, intron 1 of 13) -6498 ENSMUSG00000104600.4 ENSMUSG00000104600 ENSMUST00000196370 Dmrt1i sense_intronic Interval_59508 chr15 54779678 54781094 + 0 NA Intergenic Intergenic -14873 ENSMUSG00000098237.1 ENSMUSG00000098237 ENSMUST00000182543 Gm7577 processed_pseudogene Interval_162816 chr9 9452937 9453512 + 0 NA intron (ENSMUSG00000111061.1, intron 2 of 3) lincRNA-intron (ENSMUSG00000111061.1, intron 2 of 3) 18632 ENSMUSG00000111317.1 ENSMUSG00000111317 ENSMUST00000217395 Gm47333 processed_pseudogene Interval_39591 chr12 91293029 91293923 + 0 NA intron (ENSMUSG00000061533.16, intron 13 of 25) protein_coding-intron (ENSMUSG00000061533.16, intron 13 of 13) -30193 ENSMUSG00000113239.1 ENSMUSG00000113239 ENSMUST00000222339 Gm18388 processed_pseudogene Interval_57707 chr15 16294486 16294931 + 0 NA Intergenic Intergenic -86755 ENSMUSG00000115434.1 ENSMUSG00000115434 ENSMUST00000227564 Gm6479 processed_pseudogene Interval_115026 chr4 88696291 88697576 + 0 NA promoter-TSS (ENSMUSG00000081893.1) unprocessed_pseudogene-promoter-TSS (ENSMUSG00000081893.1) -235 ENSMUSG00000081893.1 ENSMUSG00000081893 ENSMUST00000119737 Gm13273 unprocessed_pseudogene Interval_121306 chr4 154881876 154882243 + 0 NA promoter-TSS (ENSMUSG00000058183.14) protein_coding-promoter-TSS (ENSMUSG00000058183.14) -10056 ENSMUSG00000087437.7 ENSMUSG00000087437 ENSMUST00000151696 Gm13112 antisense Interval_121843 chr5 8772939 8773262 + 0 NA TTS (ENSMUSG00000097279.1) antisense-TTS (ENSMUSG00000097279.1) 25423 ENSMUSG00000097279.1 ENSMUSG00000097279 ENSMUST00000181058 Gm5106 antisense Interval_125271 chr5 65797134 65797866 + 0 NA intron (ENSMUSG00000037795.14, intron 6 of 13) protein_coding-intron (ENSMUSG00000037795.14, intron 6 of 17) 19486 ENSMUSG00000106682.1 ENSMUSG00000106682 ENSMUST00000200774 Gm42648 TEC Interval_63543 chr15 101929393 101930096 + 0 NA TTS (ENSMUSG00000061397.8) protein_coding-TTS (ENSMUSG00000061397.8) 4243 ENSMUSG00000061397.8 ENSMUSG00000061397 ENSMUST00000230441 Krt79 protein_coding Interval_167070 chr9 65040594 65041028 + 0 NA intron (ENSMUSG00000032393.15, intron 2 of 18) protein_coding-intron (ENSMUSG00000032393.15, intron 3 of 20) 8033 ENSMUSG00000032393.15 ENSMUSG00000032393 ENSMUST00000214678 Dpp8 protein_coding Interval_49868 chr13 117388643 117388840 + 0 NA Intergenic Intergenic -30121 ENSMUSG00000114540.1 ENSMUSG00000114540 ENSMUST00000225588 Gm6421 processed_pseudogene Interval_173722 chrX 102933369 102934723 + 0 NA Intergenic Intergenic 5674 ENSMUSG00000109745.1 ENSMUSG00000109745 ENSMUST00000211116 1700018G05Rik protein_coding Interval_38327 chr12 77237932 77239769 + 0 NA promoter-TSS (ENSMUSG00000021065.16) protein_coding-promoter-TSS (ENSMUSG00000021065.16) -187 ENSMUSG00000112150.1 ENSMUSG00000112150 ENSMUST00000219513 9530018F02Rik bidirectional_promoter_lncRNA Interval_132640 chr5 146904381 146906402 + 0 NA Intergenic Intergenic -43266 ENSMUSG00000016503.18 ENSMUSG00000016503 ENSMUST00000133296 Gtf3a protein_coding Interval_130418 chr5 127477830 127478860 + 0 NA intron (ENSMUSG00000034324.16, intron 3 of 8) protein_coding-intron (ENSMUSG00000034324.16, intron 3 of 8) -74909 ENSMUSG00000034324.16 ENSMUSG00000034324 ENSMUST00000145748 Tmem132c protein_coding Interval_172963 chrX 58002437 58002963 + 0 NA Intergenic Intergenic 13227 ENSMUSG00000093905.1 ENSMUSG00000093905 ENSMUST00000082977 Gm25023 snRNA Interval_110317 chr3 156762211 156763077 + 0 NA intron (ENSMUSG00000040037.13, intron 1 of 6) protein_coding-intron (ENSMUSG00000040037.13, intron 1 of 6) 25104 ENSMUSG00000105290.1 ENSMUSG00000105290 ENSMUST00000199492 Gm43528 TEC Interval_23408 chr11 22342294 22343500 + 0 NA promoter-TSS (ENSMUSG00000042302.14) protein_coding-promoter-TSS (ENSMUSG00000042302.14) -43395 ENSMUSG00000083580.1 ENSMUSG00000083580 ENSMUST00000117789 Rpsa-ps3 processed_pseudogene Interval_121030 chr4 152324795 152326448 + 0 NA promoter-TSS (ENSMUSG00000028936.15) protein_coding-promoter-TSS (ENSMUSG00000028936.15) -248 ENSMUSG00000028936.15 ENSMUSG00000028936 ENSMUST00000156445 Rpl22 protein_coding Interval_77340 chr17 88073294 88073597 + 0 NA Intergenic Intergenic -8202 ENSMUSG00000005371.15 ENSMUSG00000005371 ENSMUST00000235056 Fbxo11 protein_coding Interval_101732 chr3 9249780 9252077 + 0 NA exon (ENSMUSG00000069114.8, exon 1 of 6) protein_coding-exon (ENSMUSG00000069114.8, exon 1 of 6) 326 ENSMUSG00000069114.8 ENSMUSG00000069114 ENSMUST00000155203 Zbtb10 protein_coding Interval_10548 chr1 171705834 171706176 + 0 NA TTS (ENSMUSG00000015355.13) protein_coding-TTS (ENSMUSG00000015355.13) -5083 ENSMUSG00000059058.7 ENSMUSG00000059058 ENSMUST00000118448 Tma7-ps processed_pseudogene Interval_64468 chr16 11726628 11726915 + 0 NA intron (ENSMUSG00000071669.14, intron 19 of 20) protein_coding-intron (ENSMUSG00000071669.14, intron 12 of 13) -34914 ENSMUSG00000085732.1 ENSMUSG00000085732 ENSMUST00000154314 Gm4279 antisense Interval_22957 chr11 17963532 17964410 + 0 NA Intergenic Intergenic 9967 ENSMUSG00000086468.1 ENSMUSG00000086468 ENSMUST00000148496 Etaa1os antisense Interval_168982 chr9 90012609 90012870 + 0 NA intron (ENSMUSG00000032356.12, intron 22 of 26) protein_coding-intron (ENSMUSG00000032356.12, intron 22 of 26) -18568 ENSMUSG00000088976.1 ENSMUSG00000088976 ENSMUST00000158351 Gm23759 misc_RNA Interval_115559 chr4 100790274 100790849 + 0 NA intron (ENSMUSG00000028532.14, intron 1 of 26) protein_coding-intron (ENSMUSG00000028532.14, intron 1 of 26) -204149 ENSMUSG00000028532.14 ENSMUSG00000028532 ENSMUST00000136430 Cachd1 protein_coding Interval_36519 chr12 48176254 48177930 + 0 NA Intergenic Intergenic -129558 ENSMUSG00000111984.1 ENSMUSG00000111984 ENSMUST00000218240 Gm46327 unprocessed_pseudogene Interval_28099 chr11 72802382 72802651 + 0 NA intron (ENSMUSG00000055670.14, intron 1 of 54) protein_coding-intron (ENSMUSG00000055670.14, intron 1 of 54) -2038 ENSMUSG00000089224.1 ENSMUSG00000089224 ENSMUST00000158599 Gm22075 misc_RNA Interval_142888 chr6 146724223 146725679 + 0 NA promoter-TSS (ENSMUSG00000001630.13) protein_coding-promoter-TSS (ENSMUSG00000001630.13) -361 ENSMUSG00000001630.13 ENSMUSG00000001630 ENSMUST00000203318 Stk38l protein_coding Interval_153860 chr8 10044025 10044331 + 0 NA Intergenic Intergenic 12860 ENSMUSG00000031497.9 ENSMUSG00000031497 ENSMUST00000208770 Tnfsf13b protein_coding Interval_37310 chr12 65060361 65061513 + 0 NA intron (ENSMUSG00000035597.19, intron 13 of 14) protein_coding-intron (ENSMUSG00000035597.19, intron 12 of 13) 4364 ENSMUSG00000087790.1 ENSMUSG00000087790 ENSMUST00000157165 Gm25970 snoRNA Interval_115312 chr4 95881950 95882157 + 0 NA intron (ENSMUSG00000028573.18, intron 11 of 12) protein_coding-intron (ENSMUSG00000028573.18, intron 14 of 15) 84982 ENSMUSG00000044125.6 ENSMUSG00000044125 ENSMUST00000143332 9530080O11Rik processed_transcript Interval_143812 chr7 16456020 16456350 + 0 NA TTS (ENSMUSG00000019158.9) protein_coding-TTS (ENSMUSG00000019158.9) 3222 ENSMUSG00000019158.9 ENSMUSG00000019158 ENSMUST00000209536 Tmem160 protein_coding Interval_165893 chr9 54328332 54328558 + 0 NA intron (ENSMUSG00000046167.5, intron 4 of 9) protein_coding-intron (ENSMUSG00000046167.5, intron 4 of 9) -26875 ENSMUSG00000074343.3 ENSMUSG00000074343 ENSMUST00000149237 Gldnos antisense Interval_76195 chr17 76757146 76757342 + 0 NA Intergenic Intergenic 64246 ENSMUSG00000117498.1 ENSMUSG00000117498 ENSMUST00000234836 Gm18366 processed_pseudogene Interval_90211 chr2 29049600 29050009 + 0 NA intron (ENSMUSG00000079502.8, intron 1 of 6) protein_coding-intron (ENSMUSG00000079502.8, intron 1 of 5) -10444 ENSMUSG00000079502.8 ENSMUSG00000079502 ENSMUST00000113843 Cfap77 protein_coding Interval_7350 chr1 130353389 130353738 + 0 NA Intergenic Intergenic 69177 ENSMUSG00000026401.15 ENSMUSG00000026401 ENSMUST00000136497 Cd55b protein_coding Interval_116818 chr4 117428544 117430411 + 0 NA intron (ENSMUSG00000028677.19, intron 2 of 2) protein_coding-intron (ENSMUSG00000028677.19, intron 2 of 14) -16473 ENSMUSG00000086876.1 ENSMUSG00000086876 ENSMUST00000136115 Gm12828 antisense Interval_95811 chr2 116820996 116821817 + 0 NA Intergenic Intergenic 55762 ENSMUSG00000086462.1 ENSMUSG00000086462 ENSMUST00000151391 Gm13990 antisense Interval_2853 chr1 46583045 46583787 + 0 NA intron (ENSMUSG00000101337.6, intron 19 of 64) protein_coding-intron (ENSMUSG00000101337.6, intron 19 of 64) -56815 ENSMUSG00000101337.6 ENSMUSG00000101337 ENSMUST00000187094 Dnah7c protein_coding Interval_1091 chr1 15508350 15508580 + 0 NA intron (ENSMUSG00000092083.4, intron 2 of 2) protein_coding-intron (ENSMUSG00000092083.4, intron 1 of 1) -47784 ENSMUSG00000104149.1 ENSMUSG00000104149 ENSMUST00000194564 Gm37138 TEC Interval_14411 chr10 33178828 33179098 + 0 NA intron (ENSMUSG00000019787.9, intron 5 of 7) protein_coding-intron (ENSMUSG00000019787.9, intron 5 of 37) 7253 ENSMUSG00000112897.1 ENSMUSG00000112897 ENSMUST00000218354 Gm47831 TEC Interval_76554 chr17 81018804 81019335 + 0 NA Intergenic Intergenic 46013 ENSMUSG00000024246.9 ENSMUSG00000024246 ENSMUST00000234801 Thumpd2 protein_coding Interval_117700 chr4 125632934 125633398 + 0 NA intron (ENSMUSG00000001985.9, intron 3 of 15) protein_coding-intron (ENSMUSG00000001985.9, intron 3 of 15) 128417 ENSMUSG00000094403.1 ENSMUSG00000094403 ENSMUST00000102081 Mir692-2 miRNA Interval_89094 chr2 16256826 16257201 + 0 NA Intergenic Intergenic -233588 ENSMUSG00000103865.1 ENSMUSG00000103865 ENSMUST00000193596 Gm37416 TEC Interval_95267 chr2 105396037 105396409 + 0 NA promoter-TSS (ENSMUSG00000005973.6) protein_coding-promoter-TSS (ENSMUSG00000005973.6) -875 ENSMUSG00000005973.6 ENSMUSG00000005973 ENSMUST00000127019 Rcn1 protein_coding Interval_160160 chr8 106818935 106819461 + 0 NA intron (ENSMUSG00000041949.6, intron 17 of 17) protein_coding-intron (ENSMUSG00000041949.6, intron 17 of 17) -51638 ENSMUSG00000031910.14 ENSMUSG00000031910 ENSMUST00000175987 Has3 protein_coding Interval_138009 chr6 84115735 84116215 + 0 NA intron (ENSMUSG00000033788.15, intron 29 of 55) protein_coding-intron (ENSMUSG00000033788.15, intron 29 of 54) -8968 ENSMUSG00000087001.2 ENSMUSG00000087001 ENSMUST00000137673 Gm15475 antisense Interval_146272 chr7 45079793 45081554 + 0 NA Intergenic Intergenic 7934 ENSMUSG00000019539.11 ENSMUSG00000019539 ENSMUST00000210355 Rcn3 protein_coding Interval_110781 chr4 8316054 8316346 + 0 NA Intergenic Intergenic -77159 ENSMUSG00000041261.9 ENSMUSG00000041261 ENSMUST00000066674 Car8 protein_coding Interval_135592 chr6 41112806 41113530 + 0 NA promoter-TSS (ENSMUSG00000095574.2) TR_V_gene-promoter-TSS (ENSMUSG00000095574.2) -382 ENSMUSG00000095574.2 ENSMUSG00000095574 ENSMUST00000103267 Trbv12-1 TR_V_gene Interval_91996 chr2 52394379 52394745 + 0 NA Intergenic Intergenic 9814 ENSMUSG00000086447.2 ENSMUSG00000086447 ENSMUST00000124622 Gm13522 antisense Interval_15722 chr10 54695967 54698545 + 0 NA Intergenic Intergenic 15781 ENSMUSG00000088987.1 ENSMUSG00000088987 ENSMUST00000158362 Gm25602 snRNA Interval_171495 chr9 118802200 118802484 + 0 NA intron (ENSMUSG00000039115.13, intron 5 of 5) protein_coding-intron (ENSMUSG00000039115.13, intron 17 of 27) 35613 ENSMUSG00000066270.3 ENSMUSG00000066270 ENSMUST00000139408 Gm10157 processed_pseudogene Interval_47082 chr13 75483283 75484538 + 0 NA Intergenic Intergenic -4523 ENSMUSG00000113821.1 ENSMUSG00000113821 ENSMUST00000221326 Gm48234 processed_pseudogene Interval_125277 chr5 65871154 65872113 + 0 NA intron (ENSMUSG00000029204.7, intron 1 of 2) protein_coding-intron (ENSMUSG00000029204.7, intron 2 of 3) 8053 ENSMUSG00000029204.7 ENSMUSG00000029204 ENSMUST00000202471 Rhoh protein_coding Interval_155573 chr8 34725998 34726296 + 0 NA Intergenic Intergenic -66778 ENSMUSG00000109846.1 ENSMUSG00000109846 ENSMUST00000210130 Gm45627 lincRNA Interval_78571 chr18 14830731 14831101 + 0 NA exon (ENSMUSG00000117530.1, exon 1 of 2) processed_pseudogene-exon (ENSMUSG00000117530.1, exon 1 of 2) 248 ENSMUSG00000117530.1 ENSMUSG00000117530 ENSMUST00000234669 Gm21055 processed_pseudogene Interval_45061 chr13 51806356 51806727 + 0 NA Intergenic Intergenic -12877 ENSMUSG00000021451.16 ENSMUSG00000021451 ENSMUST00000155896 Sema4d protein_coding Interval_147682 chr7 71867060 71867739 + 0 NA Intergenic Intergenic -42294 ENSMUSG00000108669.1 ENSMUSG00000108669 ENSMUST00000205699 4930441H08Rik lincRNA Interval_53130 chr14 54617233 54618487 + 0 NA exon (ENSMUSG00000022193.7, exon 1 of 3) protein_coding-exon (ENSMUSG00000022193.7, exon 1 of 3) 148 ENSMUSG00000022193.7 ENSMUSG00000022193 ENSMUST00000227257 Psmb5 protein_coding Interval_152651 chr7 135735716 135736996 + 0 NA Intergenic Intergenic -6320 ENSMUSG00000109831.1 ENSMUSG00000109831 ENSMUST00000209706 Gm36431 lincRNA Interval_2046 chr1 36095675 36096290 + 0 NA intron (ENSMUSG00000045216.7, intron 1 of 1) protein_coding-intron (ENSMUSG00000045216.7, intron 1 of 1) -5708 ENSMUSG00000045216.7 ENSMUSG00000045216 ENSMUST00000194670 Hs6st1 protein_coding Interval_124056 chr5 37895491 37896403 + 0 NA TTS (ENSMUSG00000106718.1) lincRNA-TTS (ENSMUSG00000106718.1) 1597 ENSMUSG00000106718.1 ENSMUSG00000106718 ENSMUST00000201327 Gm20052 lincRNA Interval_33019 chr11 113703642 113704170 + 0 NA intron (ENSMUSG00000018727.19, intron 3 of 7) protein_coding-intron (ENSMUSG00000018727.19, intron 3 of 6) 5614 ENSMUSG00000018727.19 ENSMUSG00000018727 ENSMUST00000151396 Cpsf4l protein_coding Interval_96560 chr2 125716108 125717113 + 0 NA intron (ENSMUSG00000035109.14, intron 1 of 1) protein_coding-intron (ENSMUSG00000035109.14, intron 1 of 11) 7538 ENSMUSG00000035109.14 ENSMUSG00000035109 ENSMUST00000157002 Shc4 protein_coding Interval_115101 chr4 89753251 89753812 + 0 NA Intergenic Intergenic 74095 ENSMUSG00000043753.2 ENSMUSG00000043753 ENSMUST00000052478 Dmrta1 protein_coding Interval_91138 chr2 35401100 35401410 + 0 NA TTS (ENSMUSG00000035778.17) protein_coding-TTS (ENSMUSG00000035778.17) -4080 ENSMUSG00000079421.8 ENSMUSG00000079421 ENSMUST00000113009 4930402F06Rik protein_coding Interval_122913 chr5 27278428 27278770 + 0 NA intron (ENSMUSG00000061576.15, intron 1 of 25) protein_coding-intron (ENSMUSG00000061576.15, intron 1 of 25) 60414 ENSMUSG00000106537.1 ENSMUSG00000106537 ENSMUST00000200263 Gm43502 TEC Interval_53185 chr14 54995502 54996397 + 0 NA Intergenic Intergenic -2258 ENSMUSG00000053093.16 ENSMUSG00000053093 ENSMUST00000226424 Myh7 protein_coding Interval_166604 chr9 61267353 61268789 + 0 NA intron (ENSMUSG00000111658.1, intron 3 of 4) lincRNA-intron (ENSMUSG00000111658.1, intron 3 of 4) 25738 ENSMUSG00000111658.1 ENSMUSG00000111658 ENSMUST00000213377 B930092H01Rik lincRNA Interval_98634 chr2 153696899 153697177 + 0 NA intron (ENSMUSG00000082079.2, intron 1 of 18) protein_coding-intron (ENSMUSG00000082079.2, intron 1 of 18) 386 ENSMUSG00000082079.2 ENSMUSG00000082079 ENSMUST00000119996 Dnmt3c protein_coding Interval_57343 chr15 9272356 9273213 + 0 NA Intergenic Intergenic -10717 ENSMUSG00000072664.11 ENSMUSG00000072664 ENSMUST00000176878 Ugt3a1 protein_coding Interval_155108 chr8 26650571 26651349 + 0 NA Intergenic Intergenic 13285 ENSMUSG00000110338.1 ENSMUSG00000110338 ENSMUST00000211586 Gm45584 lincRNA Interval_140695 chr6 120623101 120623719 + 0 NA Intergenic Intergenic -43234 ENSMUSG00000107580.1 ENSMUSG00000107580 ENSMUST00000204159 Gm44124 TEC Interval_90960 chr2 33727126 33727334 + 0 NA Intergenic Intergenic -8331 ENSMUSG00000085463.1 ENSMUSG00000085463 ENSMUST00000130532 9430024E24Rik lincRNA Interval_79288 chr18 30054213 30054997 + 0 NA Intergenic Intergenic -212644 ENSMUSG00000117465.1 ENSMUSG00000117465 ENSMUST00000234467 Gm49980 lincRNA Interval_133307 chr5 151397913 151398175 + 0 NA intron (ENSMUSG00000097321.5, intron 2 of 3) lincRNA-intron (ENSMUSG00000054622.4, intron 1 of 1) -2100 ENSMUSG00000097321.5 ENSMUSG00000097321 ENSMUST00000201853 1700028E10Rik processed_transcript Interval_121096 chr4 152975862 152976135 + 0 NA Intergenic Intergenic 37586 ENSMUSG00000080360.1 ENSMUSG00000080360 ENSMUST00000116710 Gm25779 miRNA Interval_36593 chr12 51046820 51047638 + 0 NA intron (ENSMUSG00000111986.1, intron 3 of 4) lincRNA-intron (ENSMUSG00000111986.1, intron 3 of 4) -38458 ENSMUSG00000088966.1 ENSMUSG00000088966 ENSMUST00000158341 Gm22088 snoRNA Interval_118211 chr4 129554693 129557165 + 0 NA promoter-TSS (ENSMUSG00000000409.14) protein_coding-promoter-TSS (ENSMUSG00000000409.14) 1882 ENSMUSG00000099070.1 ENSMUSG00000099070 ENSMUST00000183371 Mir8119 miRNA Interval_172151 chrX 8023607 8025025 + 0 NA Intergenic Intergenic -5824 ENSMUSG00000031163.2 ENSMUSG00000031163 ENSMUST00000033503 Glod5 protein_coding Interval_95993 chr2 119024310 119025009 + 0 NA intron (ENSMUSG00000039983.13, intron 2 of 2) protein_coding-intron (ENSMUSG00000039983.13, intron 2 of 3) 4734 ENSMUSG00000039983.13 ENSMUSG00000039983 ENSMUST00000110833 Ccdc32 protein_coding Interval_9058 chr1 153332006 153333792 + 0 NA promoter-TSS (ENSMUSG00000026478.14) protein_coding-promoter-TSS (ENSMUSG00000026478.14) 27467 ENSMUSG00000079138.3 ENSMUSG00000079138 ENSMUST00000110797 Gm8818 processed_pseudogene Interval_105926 chr3 90125166 90125360 + 0 NA intron (ENSMUSG00000027939.11, intron 7 of 39) protein_coding-intron (ENSMUSG00000027939.11, intron 7 of 39) -1272 ENSMUSG00000064930.1 ENSMUSG00000064930 ENSMUST00000082996 Gm23723 snoRNA Interval_8847 chr1 151515723 151516385 + 0 NA Intergenic Intergenic 4633 ENSMUSG00000100551.1 ENSMUSG00000100551 ENSMUST00000187109 Gm19503 processed_pseudogene Interval_87212 chr19 46955524 46955712 + 0 NA intron (ENSMUSG00000025041.17, intron 1 of 3) protein_coding-intron (ENSMUSG00000025041.17, intron 1 of 18) 6690 ENSMUSG00000025041.17 ENSMUSG00000025041 ENSMUST00000237658 Nt5c2 protein_coding Interval_120408 chr4 148420655 148420851 + 0 NA Intergenic Intergenic 22732 ENSMUSG00000064648.2 ENSMUSG00000064648 ENSMUST00000082714 Gm23303 snRNA Interval_85861 chr19 32485425 32486995 + 0 NA exon (ENSMUSG00000024896.9, exon 1 of 5) protein_coding-exon (ENSMUSG00000024896.9, exon 1 of 5) 287 ENSMUSG00000024896.9 ENSMUSG00000024896 ENSMUST00000236287 Minpp1 protein_coding Interval_14078 chr10 26632151 26633139 + 0 NA Intergenic Intergenic 21898 ENSMUSG00000111882.2 ENSMUSG00000111882 ENSMUST00000218590 Gm48864 unitary_pseudogene Interval_148127 chr7 79386563 79388804 + 0 NA promoter-TSS (ENSMUSG00000039194.16) protein_coding-promoter-TSS (ENSMUSG00000039194.16) -771 ENSMUSG00000039194.16 ENSMUSG00000039194 ENSMUST00000206695 Rlbp1 protein_coding Interval_84481 chr19 11751083 11751486 + 0 NA intron (ENSMUSG00000024682.3, intron 4 of 8) protein_coding-intron (ENSMUSG00000024682.3, intron 4 of 8) 3730 ENSMUSG00000024682.3 ENSMUSG00000024682 ENSMUST00000025585 Cblif protein_coding Interval_69696 chr16 95622961 95625015 + 0 NA Intergenic Intergenic -78467 ENSMUSG00000022895.16 ENSMUSG00000022895 ENSMUST00000233578 Ets2 protein_coding Interval_112761 chr4 44668292 44668679 + 0 NA promoter-TSS (ENSMUSG00000102880.1) TEC-promoter-TSS (ENSMUSG00000102880.1) -845 ENSMUSG00000102880.1 ENSMUSG00000102880 ENSMUST00000193095 4930517J16Rik TEC Interval_160715 chr8 111769124 111770177 + 0 NA intron (ENSMUSG00000031954.6, intron 6 of 6) protein_coding-intron (ENSMUSG00000031954.6, intron 6 of 6) -37514 ENSMUSG00000031955.10 ENSMUSG00000031955 ENSMUST00000212147 Bcar1 protein_coding Interval_6340 chr1 106058129 106059701 + 0 NA Intergenic Intergenic 16979 ENSMUSG00000102501.1 ENSMUSG00000102501 ENSMUST00000193577 Gm37372 TEC Interval_10871 chr1 176425521 176425712 + 0 NA Intergenic Intergenic -51896 ENSMUSG00000104248.1 ENSMUSG00000104248 ENSMUST00000195389 Gm38152 TEC Interval_2533 chr1 40000416 40002772 + 0 NA intron (ENSMUSG00000026074.15, intron 16 of 30) protein_coding-intron (ENSMUSG00000026074.15, intron 16 of 30) 48774 ENSMUSG00000102985.1 ENSMUSG00000102985 ENSMUST00000193054 4930456G14Rik TEC Interval_96893 chr2 129255905 129256173 + 0 NA intron (ENSMUSG00000085485.1, intron 2 of 2) antisense-intron (ENSMUSG00000085485.1, intron 2 of 2) 9663 ENSMUSG00000085485.1 ENSMUSG00000085485 ENSMUST00000141964 Gm14024 antisense Interval_160972 chr8 116596102 116596839 + 0 NA intron (ENSMUSG00000031758.10, intron 2 of 6) protein_coding-intron (ENSMUSG00000031758.10, intron 2 of 6) 91496 ENSMUSG00000034467.7 ENSMUSG00000034467 ENSMUST00000078170 Dynlrb2 protein_coding Interval_47454 chr13 84479342 84479550 + 0 NA Intergenic Intergenic -139333 ENSMUSG00000098245.1 ENSMUSG00000098245 ENSMUST00000182385 Gm26927 processed_pseudogene Interval_35678 chr12 27398569 27399380 + 0 NA Intergenic Intergenic -56400 ENSMUSG00000063632.6 ENSMUSG00000063632 ENSMUST00000079063 Sox11 protein_coding Interval_83931 chr19 5665832 5666020 + 0 NA TTS (ENSMUSG00000054874.12) protein_coding-TTS (ENSMUSG00000054874.12) -11089 ENSMUSG00000056917.13 ENSMUSG00000056917 ENSMUST00000236827 Sipa1 protein_coding Interval_58453 chr15 34678121 34679126 + 0 NA promoter-TSS (ENSMUSG00000038879.8) protein_coding-promoter-TSS (ENSMUSG00000038879.8) 3550 ENSMUSG00000115526.1 ENSMUSG00000115526 ENSMUST00000228853 4930413F20Rik antisense Interval_82637 chr18 75555990 75556632 + 0 NA intron (ENSMUSG00000052928.9, intron 7 of 11) protein_coding-intron (ENSMUSG00000052928.9, intron 7 of 11) 41666 ENSMUSG00000097712.1 ENSMUSG00000097712 ENSMUST00000181913 Gm10532 antisense Interval_106162 chr3 94109492 94110106 + 0 NA Intergenic Intergenic -10180 ENSMUSG00000104338.1 ENSMUSG00000104338 ENSMUST00000193557 Gm9131 unprocessed_pseudogene Interval_84772 chr19 16478383 16478670 + 0 NA intron (ENSMUSG00000024697.4, intron 1 of 6) protein_coding-intron (ENSMUSG00000024697.4, intron 1 of 6) 12538 ENSMUSG00000117699.1 ENSMUSG00000117699 ENSMUST00000236751 Gm8222 processed_pseudogene Interval_36064 chr12 34895088 34895829 + 0 NA TTS (ENSMUSG00000077264.1) snoRNA-TTS (ENSMUSG00000077264.1) 434 ENSMUSG00000077264.1 ENSMUSG00000077264 ENSMUST00000104076 Gm24429 snoRNA Interval_6760 chr1 119305010 119305983 + 0 NA exon (ENSMUSG00000099860.1, exon 4 of 4) lincRNA-exon (ENSMUSG00000099860.1, exon 4 of 4) 21337 ENSMUSG00000099860.1 ENSMUSG00000099860 ENSMUST00000189894 Gm29456 lincRNA Interval_65152 chr16 20213299 20214269 + 0 NA intron (ENSMUSG00000041215.16, intron 1 of 5) protein_coding-intron (ENSMUSG00000041215.16, intron 21 of 29) -8972 ENSMUSG00000041215.16 ENSMUSG00000041215 ENSMUST00000231997 Yeats2 protein_coding Interval_17425 chr10 76550518 76552368 + 0 NA promoter-TSS (ENSMUSG00000033105.12) protein_coding-promoter-TSS (ENSMUSG00000033105.12) 9561 ENSMUSG00000033105.12 ENSMUSG00000033105 ENSMUST00000162282 Lss protein_coding Interval_1169 chr1 16518561 16520299 + 0 NA promoter-TSS (ENSMUSG00000025920.19) protein_coding-promoter-TSS (ENSMUSG00000025920.19) -124 ENSMUSG00000025920.19 ENSMUSG00000025920 ENSMUST00000144138 Stau2 protein_coding Interval_12876 chr10 7170602 7170853 + 0 NA intron (ENSMUSG00000015202.13, intron 1 of 12) protein_coding-intron (ENSMUSG00000015202.13, intron 1 of 12) -35221 ENSMUSG00000015202.13 ENSMUSG00000015202 ENSMUST00000015346 Cnksr3 protein_coding Interval_167794 chr9 72741152 72741862 + 0 NA promoter-TSS (ENSMUSG00000032216.15) protein_coding-promoter-TSS (ENSMUSG00000032216.15) 13367 ENSMUSG00000102411.1 ENSMUSG00000102411 ENSMUST00000194508 Gm36936 TEC Interval_44306 chr13 43525129 43526688 + 0 NA Intergenic Intergenic -4312 ENSMUSG00000112983.1 ENSMUSG00000112983 ENSMUST00000222336 Gm32939 lincRNA Interval_101783 chr3 9544798 9545495 + 0 NA intron (ENSMUSG00000040209.12, intron 1 of 9) protein_coding-intron (ENSMUSG00000040209.12, intron 2 of 8) 20153 ENSMUSG00000040209.12 ENSMUSG00000040209 ENSMUST00000192832 Zfp704 protein_coding Interval_163879 chr9 27413839 27414653 + 0 NA Intergenic Intergenic 17036 ENSMUSG00000031991.10 ENSMUSG00000031991 ENSMUST00000215326 Spata19 protein_coding Interval_98907 chr2 155939696 155940934 + 0 NA promoter-TSS (ENSMUSG00000078972.1) protein_coding-promoter-TSS (ENSMUSG00000078972.1) -413 ENSMUSG00000078972.1 ENSMUSG00000078972 ENSMUST00000109629 Gm15557 protein_coding Interval_83308 chr18 84059637 84060345 + 0 NA intron (ENSMUSG00000046982.11, intron 1 of 1) protein_coding-intron (ENSMUSG00000046982.11, intron 1 of 1) 27715 ENSMUSG00000046982.11 ENSMUSG00000046982 ENSMUST00000237918 Tshz1 protein_coding Interval_50301 chr14 11725678 11725903 + 0 NA intron (ENSMUSG00000021745.14, intron 2 of 3) protein_coding-intron (ENSMUSG00000021745.14, intron 2 of 29) -42153 ENSMUSG00000114310.1 ENSMUSG00000114310 ENSMUST00000225152 Gm48602 TEC Interval_75016 chr17 60783122 60784359 + 0 NA Intergenic Intergenic 44507 ENSMUSG00000117288.1 ENSMUSG00000117288 ENSMUST00000233362 Gm49856 processed_pseudogene Interval_59894 chr15 61102470 61102778 + 0 NA Intergenic Intergenic -55245 ENSMUSG00000116498.1 ENSMUSG00000116498 ENSMUST00000229334 Gm38563 lincRNA Interval_86092 chr19 36507753 36508100 + 0 NA Intergenic Intergenic -56769 ENSMUSG00000114235.1 ENSMUSG00000114235 ENSMUST00000224716 F530104D19Rik antisense Interval_149958 chr7 103732174 103732468 + 0 NA exon (ENSMUSG00000096516.3, exon 2 of 2) protein_coding-exon (ENSMUSG00000096516.3, exon 2 of 2) 393 ENSMUSG00000096516.3 ENSMUSG00000096516 ENSMUST00000218266 Olfr628 protein_coding Interval_169622 chr9 99501468 99501730 + 0 NA intron (ENSMUSG00000032468.11, intron 15 of 21) protein_coding-intron (ENSMUSG00000032468.11, intron 15 of 21) 50124 ENSMUSG00000046242.8 ENSMUSG00000046242 ENSMUST00000056103 Nme9 protein_coding Interval_135048 chr6 34948341 34949100 + 0 NA promoter-TSS (ENSMUSG00000029847.13) protein_coding-promoter-TSS (ENSMUSG00000029847.13) 27716 ENSMUSG00000029848.11 ENSMUSG00000029848 ENSMUST00000114997 Stra8 protein_coding Interval_134032 chr6 17875971 17876188 + 0 NA intron (ENSMUSG00000029534.17, intron 6 of 7) protein_coding-intron (ENSMUSG00000029534.17, intron 8 of 14) -29628 ENSMUSG00000098570.1 ENSMUSG00000098570 ENSMUST00000184157 Gm27444 misc_RNA Interval_73033 chr17 34257751 34258003 + 0 NA intron (ENSMUSG00000073421.6, intron 1 of 2) protein_coding-intron (ENSMUSG00000073421.6, intron 1 of 2) -5373 ENSMUSG00000073421.6 ENSMUSG00000073421 ENSMUST00000174875 H2-Ab1 protein_coding Interval_115366 chr4 98231485 98231676 + 0 NA Intergenic Intergenic 3710 ENSMUSG00000082388.1 ENSMUSG00000082388 ENSMUST00000121092 Gm12692 processed_pseudogene Interval_39532 chr12 89415628 89416105 + 0 NA intron (ENSMUSG00000066392.12, intron 7 of 18) protein_coding-intron (ENSMUSG00000066392.12, intron 8 of 19) -15470 ENSMUSG00000080680.1 ENSMUSG00000080680 ENSMUST00000117030 Gm23989 miRNA Interval_163464 chr9 21565261 21566812 + 0 NA intron (ENSMUSG00000032185.15, intron 1 of 13) protein_coding-intron (ENSMUSG00000032185.15, intron 1 of 15) -21309 ENSMUSG00000032185.15 ENSMUSG00000032185 ENSMUST00000130100 Carm1 protein_coding Interval_62625 chr15 95767689 95768198 + 0 NA Intergenic Intergenic -7811 ENSMUSG00000043329.4 ENSMUSG00000043329 ENSMUST00000058951 Gm8849 processed_pseudogene Interval_103575 chr3 50053418 50054001 + 0 NA intron (ENSMUSG00000027737.10, intron 11 of 11) protein_coding-intron (ENSMUSG00000027737.10, intron 11 of 11) 24040 ENSMUSG00000104457.1 ENSMUSG00000104457 ENSMUST00000195329 Gm37826 processed_pseudogene Interval_58258 chr15 31447075 31447861 + 0 NA promoter-TSS (ENSMUSG00000068964.5) processed_pseudogene-promoter-TSS (ENSMUSG00000068964.5) -651 ENSMUSG00000068964.5 ENSMUSG00000068964 ENSMUST00000091031 Gm6361 processed_pseudogene Interval_31235 chr11 99055571 99056333 + 0 NA Intergenic Intergenic 13766 ENSMUSG00000017493.12 ENSMUSG00000017493 ENSMUST00000140772 Igfbp4 protein_coding Interval_138550 chr6 89229443 89230148 + 0 NA Intergenic Intergenic -13558 ENSMUSG00000060416.2 ENSMUSG00000060416 ENSMUST00000079186 Gm839 lincRNA Interval_6932 chr1 120966468 120966701 + 0 NA Intergenic Intergenic 97588 ENSMUSG00000102360.1 ENSMUSG00000102360 ENSMUST00000194609 Gm37043 TEC Interval_93407 chr2 72881728 72881943 + 0 NA Intergenic Intergenic -68118 ENSMUSG00000085427.7 ENSMUSG00000085427 ENSMUST00000125746 6430710C18Rik lincRNA Interval_100662 chr2 170878950 170879241 + 0 NA intron (ENSMUSG00000027560.4, intron 7 of 7) protein_coding-intron (ENSMUSG00000027560.4, intron 7 of 7) 75729 ENSMUSG00000080955.1 ENSMUSG00000080955 ENSMUST00000117955 Gm14263 processed_pseudogene Interval_37052 chr12 57037613 57038183 + 0 NA intron (ENSMUSG00000035472.14, intron 1 of 9) protein_coding-intron (ENSMUSG00000035472.14, intron 1 of 9) 122745 ENSMUSG00000035472.14 ENSMUSG00000035472 ENSMUST00000160892 Slc25a21 protein_coding Interval_92709 chr2 63547939 63548982 + 0 NA Intergenic Intergenic -116266 ENSMUSG00000065837.1 ENSMUSG00000065837 ENSMUST00000083903 Gm23503 snRNA Interval_153562 chr8 3431219 3431501 + 0 NA intron (ENSMUSG00000004568.13, intron 13 of 28) protein_coding-intron (ENSMUSG00000004568.13, intron 4 of 19) -26679 ENSMUSG00000108955.1 ENSMUSG00000108955 ENSMUST00000207266 Gm44775 TEC Interval_102616 chr3 28513320 28513920 + 0 NA intron (ENSMUSG00000027692.16, intron 4 of 30) protein_coding-intron (ENSMUSG00000027692.16, intron 4 of 30) 93677 ENSMUSG00000092990.1 ENSMUSG00000092990 ENSMUST00000175249 Mir466q miRNA Interval_55548 chr14 91518679 91518938 + 0 NA Intergenic Intergenic 129031 ENSMUSG00000115368.1 ENSMUSG00000115368 ENSMUST00000227213 Gm48942 lincRNA Interval_6141 chr1 97949098 97949324 + 0 NA exon (ENSMUSG00000089782.1, exon 1 of 1) processed_pseudogene-exon (ENSMUSG00000089782.1, exon 1 of 1) 178 ENSMUSG00000089782.1 ENSMUSG00000089782 ENSMUST00000162698 Gm3531 processed_pseudogene Interval_64681 chr16 14144119 14144787 + 0 NA intron (ENSMUSG00000060657.8, intron 8 of 10) protein_coding-intron (ENSMUSG00000060657.8, intron 7 of 26) -1913 ENSMUSG00000060657.8 ENSMUSG00000060657 ENSMUST00000229614 Marf1 protein_coding Interval_82330 chr18 70771686 70772182 + 0 NA Intergenic Intergenic 2472 ENSMUSG00000117735.1 ENSMUSG00000117735 ENSMUST00000236362 Gm18963 processed_pseudogene Interval_106738 chr3 100215247 100216305 + 0 NA Intergenic Intergenic 15089 ENSMUSG00000027865.10 ENSMUSG00000027865 ENSMUST00000200036 Gdap2 protein_coding Interval_157297 chr8 69118896 69119507 + 0 NA Intergenic Intergenic -29966 ENSMUSG00000036330.12 ENSMUSG00000036330 ENSMUST00000142710 Slc18a1 protein_coding Interval_82217 chr18 69303214 69304124 + 0 NA Intergenic Intergenic 47381 ENSMUSG00000098060.1 ENSMUSG00000098060 ENSMUST00000183237 Gm4842 processed_pseudogene Interval_74690 chr17 55976175 55977248 + 0 NA TTS (ENSMUSG00000039154.8) protein_coding-TTS (ENSMUSG00000039154.8) 5277 ENSMUSG00000039154.8 ENSMUSG00000039154 ENSMUST00000223841 Shd protein_coding Interval_92210 chr2 56621411 56621600 + 0 NA Intergenic Intergenic -164306 ENSMUSG00000098437.1 ENSMUSG00000098437 ENSMUST00000184814 Mir195b miRNA Interval_117316 chr4 122955135 122956037 + 0 NA intron (ENSMUSG00000028655.11, intron 3 of 11) protein_coding-intron (ENSMUSG00000028655.11, intron 3 of 13) 5566 ENSMUSG00000028655.11 ENSMUSG00000028655 ENSMUST00000127047 Mfsd2a protein_coding Interval_152559 chr7 134471447 134471855 + 0 NA intron (ENSMUSG00000030994.16, intron 1 of 3) protein_coding-intron (ENSMUSG00000030994.16, intron 1 of 1) 27333 ENSMUSG00000030994.16 ENSMUSG00000030994 ENSMUST00000205334 D7Ertd443e protein_coding Interval_11661 chr1 184113230 184113469 + 0 NA Intergenic Intergenic -79048 ENSMUSG00000044854.7 ENSMUSG00000044854 ENSMUST00000050306 1700056E22Rik protein_coding Interval_60320 chr15 72859273 72860206 + 0 NA intron (ENSMUSG00000047921.17, intron 16 of 16) protein_coding-intron (ENSMUSG00000047921.17, intron 16 of 21) -49415 ENSMUSG00000106847.1 ENSMUSG00000106847 ENSMUST00000202826 Peg13 sense_intronic Interval_62291 chr15 89477820 89478049 + 0 NA promoter-TSS (ENSMUSG00000022620.14) protein_coding-promoter-TSS (ENSMUSG00000022620.14) 195 ENSMUSG00000084915.2 ENSMUSG00000084915 ENSMUST00000168835 C230037L18Rik antisense Interval_28564 chr11 76748974 76749196 + 0 NA intron (ENSMUSG00000010392.8, intron 4 of 4) protein_coding-intron (ENSMUSG00000010392.8, intron 5 of 8) 14482 ENSMUSG00000010392.8 ENSMUSG00000010392 ENSMUST00000137767 Gosr1 protein_coding Interval_8257 chr1 136765966 136766839 + 0 NA Intergenic Intergenic -8793 ENSMUSG00000096432.1 ENSMUSG00000096432 ENSMUST00000175316 Gm22132 miRNA Interval_123748 chr5 35142992 35144102 + 0 NA Intergenic Intergenic -41033 ENSMUSG00000029103.16 ENSMUSG00000029103 ENSMUST00000132754 Lrpap1 protein_coding Interval_63103 chr15 99087243 99088629 + 0 NA promoter-TSS (ENSMUSG00000001076.7) protein_coding-promoter-TSS (ENSMUSG00000001076.7) -119 ENSMUSG00000001076.7 ENSMUSG00000001076 ENSMUST00000064462 C1ql4 protein_coding Interval_6943 chr1 121154577 121154770 + 0 NA intron (ENSMUSG00000097881.7, intron 2 of 2) lincRNA-intron (ENSMUSG00000097881.7, intron 2 of 2) 67202 ENSMUSG00000097881.7 ENSMUSG00000097881 ENSMUST00000181183 Celrr lincRNA Interval_136367 chr6 53826439 53826853 + 0 NA intron (ENSMUSG00000108175.1, intron 1 of 4) antisense-intron (ENSMUSG00000108175.1, intron 1 of 4) -5816 ENSMUSG00000043496.7 ENSMUSG00000043496 ENSMUST00000127748 Tril protein_coding Interval_160810 chr8 112584973 112585448 + 0 NA intron (ENSMUSG00000031772.17, intron 1 of 20) protein_coding-intron (ENSMUSG00000031772.17, intron 1 of 23) 3574 ENSMUSG00000089344.1 ENSMUSG00000089344 ENSMUST00000158719 Gm22664 misc_RNA Interval_115546 chr4 100631778 100632048 + 0 NA Intergenic Intergenic 50635 ENSMUSG00000082601.1 ENSMUSG00000082601 ENSMUST00000118145 Gm12700 processed_pseudogene Interval_111010 chr4 11190157 11192350 + 0 NA promoter-TSS (ENSMUSG00000028212.16) protein_coding-promoter-TSS (ENSMUSG00000028212.16) -101 ENSMUSG00000028212.16 ENSMUSG00000028212 ENSMUST00000149075 Ccne2 protein_coding Interval_44840 chr13 49015165 49015780 + 0 NA Intergenic Intergenic -47455 ENSMUSG00000038014.7 ENSMUSG00000038014 ENSMUST00000060805 Fam120a protein_coding Interval_6065 chr1 95727266 95727481 + 0 NA Intergenic Intergenic -10823 ENSMUSG00000102718.1 ENSMUSG00000102718 ENSMUST00000194989 Gm37761 TEC Interval_174187 chrX 139024406 139024647 + 0 NA Intergenic Intergenic 41808 ENSMUSG00000052854.15 ENSMUSG00000052854 ENSMUST00000155201 Nrk protein_coding Interval_10851 chr1 175981965 175982182 + 0 NA intron (ENSMUSG00000055214.15, intron 6 of 8) protein_coding-intron (ENSMUSG00000055214.15, intron 7 of 9) -2959 ENSMUSG00000078184.1 ENSMUSG00000078184 ENSMUST00000104983 Rbm8a2 protein_coding Interval_23108 chr11 19979284 19979535 + 0 NA intron (ENSMUSG00000045671.17, intron 1 of 5) protein_coding-intron (ENSMUSG00000045671.17, intron 1 of 5) 24839 ENSMUSG00000045671.17 ENSMUSG00000045671 ENSMUST00000123036 Spred2 protein_coding Interval_22408 chr11 9764001 9764607 + 0 NA Intergenic Intergenic -26683 ENSMUSG00000081629.1 ENSMUSG00000081629 ENSMUST00000117907 Eif3s6-ps1 processed_pseudogene Interval_101648 chr3 8520732 8521891 + 0 NA intron (ENSMUSG00000027500.10, intron 1 of 1) protein_coding-intron (ENSMUSG00000027500.10, intron 1 of 4) 11725 ENSMUSG00000027500.10 ENSMUSG00000027500 ENSMUST00000194307 Stmn2 protein_coding Interval_128197 chr5 111644084 111644756 + 0 NA Intergenic Intergenic 50804 ENSMUSG00000104833.1 ENSMUSG00000104833 ENSMUST00000198964 Gm42489 lincRNA Interval_48268 chr13 97555537 97556318 + 0 NA Intergenic Intergenic -4099 ENSMUSG00000110235.1 ENSMUSG00000110235 ENSMUST00000210897 Gm5086 lincRNA Interval_113667 chr4 57412512 57413647 + 0 NA TTS (ENSMUSG00000081540.3) processed_pseudogene-TTS (ENSMUSG00000081540.3) 1117 ENSMUSG00000081540.3 ENSMUSG00000081540 ENSMUST00000120064 Gm12538 processed_pseudogene Interval_12387 chr1 192833485 192835667 + 0 NA exon (ENSMUSG00000047384.3, exon 1 of 1) TEC-exon (ENSMUSG00000047384.3, exon 1 of 1) 638 ENSMUSG00000047384.3 ENSMUSG00000047384 ENSMUST00000057543 A730013G03Rik TEC Interval_116030 chr4 107108178 107109477 + 0 NA intron (ENSMUSG00000047636.3, intron 4 of 5) protein_coding-intron (ENSMUSG00000047636.3, intron 4 of 5) 11119 ENSMUSG00000047636.3 ENSMUSG00000047636 ENSMUST00000221740 Cdcp2 protein_coding Interval_134752 chr6 31216019 31217302 + 0 NA promoter-TSS (ENSMUSG00000044471.12) lincRNA-promoter-TSS (ENSMUSG00000044471.12) -294 ENSMUSG00000044471.12 ENSMUSG00000044471 ENSMUST00000229779 Lncpint lincRNA Interval_63194 chr15 99668900 99669250 + 0 NA Intergenic Intergenic -17463 ENSMUSG00000023015.14 ENSMUSG00000023015 ENSMUST00000109581 Racgap1 protein_coding Interval_10239 chr1 167414385 167415280 + 0 NA Intergenic Intergenic -20991 ENSMUSG00000026688.5 ENSMUSG00000026688 ENSMUST00000028005 Mgst3 protein_coding Interval_151465 chr7 122806608 122806824 + 0 NA Intergenic Intergenic -31247 ENSMUSG00000108529.1 ENSMUSG00000108529 ENSMUST00000205860 Gm29759 processed_pseudogene Interval_148558 chr7 82648128 82649278 + 0 NA promoter-TSS (ENSMUSG00000038563.14) protein_coding-promoter-TSS (ENSMUSG00000038563.14) -207 ENSMUSG00000038570.15 ENSMUSG00000038570 ENSMUST00000126478 Saxo2 protein_coding Interval_78245 chr18 10647545 10647776 + 0 NA intron (ENSMUSG00000002475.16, intron 8 of 8) protein_coding-intron (ENSMUSG00000002475.16, intron 8 of 8) 16658 ENSMUSG00000002475.16 ENSMUSG00000002475 ENSMUST00000234419 Abhd3 protein_coding Interval_51552 chr14 30081194 30081904 + 0 NA intron (ENSMUSG00000015968.18, intron 3 of 5) protein_coding-intron (ENSMUSG00000015968.18, intron 33 of 48) -13213 ENSMUSG00000118437.1 ENSMUSG00000118437 ENSMUST00000238444 Gm50467 antisense Interval_45498 chr13 55486963 55488456 + 0 NA promoter-TSS (ENSMUSG00000034675.17) protein_coding-promoter-TSS (ENSMUSG00000034675.17) -5452 ENSMUSG00000034675.17 ENSMUSG00000034675 ENSMUST00000127867 Dbn1 protein_coding Interval_67612 chr16 52452316 52453554 + 0 NA promoter-TSS (ENSMUSG00000022636.13) protein_coding-promoter-TSS (ENSMUSG00000022636.13) -470 ENSMUSG00000022636.13 ENSMUSG00000022636 ENSMUST00000168071 Alcam protein_coding Interval_84501 chr19 11928556 11928824 + 0 NA intron (ENSMUSG00000046139.8, intron 10 of 19) protein_coding-intron (ENSMUSG00000046139.8, intron 9 of 18) 4938 ENSMUSG00000077227.1 ENSMUSG00000077227 ENSMUST00000104039 Gm22272 snoRNA Interval_52369 chr14 45444319 45446006 + 0 NA promoter-TSS (ENSMUSG00000115209.1) lincRNA-promoter-TSS (ENSMUSG00000115209.1) -173 ENSMUSG00000115209.1 ENSMUSG00000115209 ENSMUST00000228291 Gm34250 lincRNA Interval_133689 chr6 8731662 8732549 + 0 NA intron (ENSMUSG00000062995.12, intron 6 of 6) protein_coding-intron (ENSMUSG00000062995.12, intron 6 of 13) 26294 ENSMUSG00000062995.12 ENSMUSG00000062995 ENSMUST00000151758 Ica1 protein_coding Interval_70898 chr17 15724041 15724711 + 0 NA intron (ENSMUSG00000023852.14, intron 2 of 22) protein_coding-intron (ENSMUSG00000023852.14, intron 2 of 35) -14159 ENSMUSG00000023852.14 ENSMUSG00000023852 ENSMUST00000173040 Chd1 protein_coding Interval_12170 chr1 190471828 190472523 + 0 NA Intergenic Intergenic 10841 ENSMUSG00000106474.1 ENSMUSG00000106474 ENSMUST00000198711 Gm47294 miRNA Interval_16133 chr10 60934299 60935561 + 0 NA intron (ENSMUSG00000098055.1, intron 1 of 4) lincRNA-intron (ENSMUSG00000037247.3, intron 1 of 2) 2939 ENSMUSG00000098055.1 ENSMUSG00000098055 ENSMUST00000182497 Gm26947 antisense Interval_95477 chr2 109936021 109936772 + 0 NA intron (ENSMUSG00000050199.13, intron 1 of 16) protein_coding-intron (ENSMUSG00000050199.13, intron 1 of 17) -23077 ENSMUSG00000063751.6 ENSMUSG00000063751 ENSMUST00000146110 Platr8 processed_transcript Interval_172316 chrX 12919763 12920411 + 0 NA Intergenic Intergenic -5495 ENSMUSG00000083760.1 ENSMUSG00000083760 ENSMUST00000121066 Gm14524 processed_pseudogene Interval_157643 chr8 71973424 71974780 + 0 NA intron (ENSMUSG00000052446.17, intron 1 of 1) protein_coding-intron (ENSMUSG00000052446.17, intron 1 of 1) -9801 ENSMUSG00000110529.1 ENSMUSG00000110529 ENSMUST00000212022 Gm45694 TEC Interval_72307 chr17 29078268 29079543 + 0 NA exon (ENSMUSG00000085912.2, exon 1 of 2) lincRNA-exon (ENSMUSG00000085912.2, exon 1 of 2) -6563 ENSMUSG00000085912.2 ENSMUSG00000085912 ENSMUST00000233713 Trp53cor1 lincRNA Interval_162872 chr9 10904440 10905265 + 0 NA promoter-TSS (ENSMUSG00000039488.15) protein_coding-promoter-TSS (ENSMUSG00000039488.15) 507 ENSMUSG00000109590.1 ENSMUSG00000109590 ENSMUST00000210677 Gm32710 antisense Interval_35980 chr12 33076279 33076571 + 0 NA intron (ENSMUSG00000035860.9, intron 4 of 19) protein_coding-intron (ENSMUSG00000035860.9, intron 4 of 19) 13984 ENSMUSG00000092931.2 ENSMUSG00000092931 ENSMUST00000175190 Gm22904 miRNA Interval_170464 chr9 108157119 108157616 + 0 NA intron (ENSMUSG00000032589.14, intron 1 of 11) protein_coding-intron (ENSMUSG00000032589.14, intron 1 of 11) -2912 ENSMUSG00000103658.1 ENSMUSG00000103658 ENSMUST00000191845 Gm37201 processed_pseudogene Interval_7854 chr1 134154162 134155000 + 0 NA Intergenic Intergenic -27595 ENSMUSG00000064246.10 ENSMUSG00000064246 ENSMUST00000134812 Chil1 protein_coding Interval_100814 chr2 172672862 172673624 + 0 NA Intergenic Intergenic 122252 ENSMUSG00000028640.11 ENSMUSG00000028640 ENSMUST00000142633 Tfap2c protein_coding Interval_68284 chr16 72451452 72452022 + 0 NA intron (ENSMUSG00000022883.11, intron 1 of 1) protein_coding-intron (ENSMUSG00000022883.11, intron 1 of 1) -79296 ENSMUSG00000116910.1 ENSMUSG00000116910 ENSMUST00000232381 Gm49670 processed_pseudogene Interval_137698 chr6 80239715 80240008 + 0 NA intron (ENSMUSG00000052581.13, intron 2 of 2) protein_coding-intron (ENSMUSG00000052581.13, intron 3 of 3) 22410 ENSMUSG00000107996.1 ENSMUSG00000107996 ENSMUST00000204888 Gm44228 TEC Interval_160306 chr8 107942680 107943412 + 0 NA intron (ENSMUSG00000038872.10, intron 1 of 15) protein_coding-intron (ENSMUSG00000038872.10, intron 1 of 15) -51513 ENSMUSG00000038872.10 ENSMUSG00000038872 ENSMUST00000043896 Zfhx3 protein_coding Interval_158771 chr8 86231904 86232468 + 0 NA Intergenic Intergenic -1668 ENSMUSG00000088192.1 ENSMUSG00000088192 ENSMUST00000157567 Gm23904 snoRNA Interval_171072 chr9 114381034 114381944 + 0 NA intron (ENSMUSG00000032431.6, intron 4 of 6) protein_coding-intron (ENSMUSG00000032431.6, intron 4 of 6) -3268 ENSMUSG00000032431.6 ENSMUSG00000032431 ENSMUST00000151377 Crtap protein_coding Interval_20742 chr10 120680857 120682872 + 0 NA intron (ENSMUSG00000112716.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000112716.1, intron 1 of 2) -14847 ENSMUSG00000103213.1 ENSMUSG00000103213 ENSMUST00000194273 Gm38289 TEC Interval_9424 chr1 156993857 156995389 + 0 NA intron (ENSMUSG00000101768.1, intron 2 of 2) lincRNA-intron (ENSMUSG00000101768.1, intron 2 of 2) -48924 ENSMUSG00000103325.1 ENSMUSG00000103325 ENSMUST00000193527 Gm10531 TEC Interval_55019 chr14 77011113 77012049 + 0 NA Intergenic Intergenic 24500 ENSMUSG00000044350.14 ENSMUSG00000044350 ENSMUST00000142300 Lacc1 protein_coding Interval_58861 chr15 39264529 39264719 + 0 NA intron (ENSMUSG00000037386.16, intron 1 of 25) protein_coding-intron (ENSMUSG00000037386.16, intron 1 of 26) 43954 ENSMUSG00000095297.1 ENSMUSG00000095297 ENSMUST00000102078 Gm25381 miRNA Interval_113675 chr4 57480626 57481213 + 0 NA intron (ENSMUSG00000090053.9, intron 1 of 6) protein_coding-intron (ENSMUSG00000090053.9, intron 1 of 6) -23370 ENSMUSG00000081615.1 ENSMUSG00000081615 ENSMUST00000121549 Gm12539 processed_pseudogene Interval_99752 chr2 164704331 164705083 + 0 NA Intergenic Intergenic 6206 ENSMUSG00000017310.7 ENSMUSG00000017310 ENSMUST00000017454 Spint4 protein_coding Interval_3327 chr1 56955092 56955992 + 0 NA intron (ENSMUSG00000038331.15, intron 1 of 6) protein_coding-intron (ENSMUSG00000038331.15, intron 2 of 9) 14330 ENSMUSG00000038331.15 ENSMUSG00000038331 ENSMUST00000177282 Satb2 protein_coding Interval_140132 chr6 114678851 114679227 + 0 NA intron (ENSMUSG00000030314.16, intron 4 of 16) protein_coding-intron (ENSMUSG00000030314.16, intron 4 of 18) -4245 ENSMUSG00000030314.16 ENSMUSG00000030314 ENSMUST00000182934 Atg7 protein_coding Interval_97365 chr2 135477046 135477422 + 0 NA intron (ENSMUSG00000085631.1, intron 1 of 1) antisense-intron (ENSMUSG00000085631.1, intron 1 of 1) 106350 ENSMUSG00000085631.1 ENSMUSG00000085631 ENSMUST00000129868 9630028H03Rik antisense Interval_151911 chr7 127489342 127490588 + 0 NA promoter-TSS (ENSMUSG00000105918.1) miRNA-promoter-TSS (ENSMUSG00000105918.1) 714 ENSMUSG00000098267.1 ENSMUSG00000098267 ENSMUST00000183486 Mir7060 miRNA Interval_1821 chr1 34011136 34012185 + 0 NA promoter-TSS (ENSMUSG00000026131.20) protein_coding-promoter-TSS (ENSMUSG00000026131.20) -20440 ENSMUSG00000103364.1 ENSMUSG00000103364 ENSMUST00000194178 Gm38157 TEC Interval_2145 chr1 36709319 36710245 + 0 NA promoter-TSS (ENSMUSG00000037351.9) protein_coding-promoter-TSS (ENSMUSG00000037351.9) 165 ENSMUSG00000037351.9 ENSMUSG00000037351 ENSMUST00000162662 Actr1b protein_coding Interval_51324 chr14 26436023 26436785 + 0 NA TTS (ENSMUSG00000021870.17) protein_coding-TTS (ENSMUSG00000021870.17) 27290 ENSMUSG00000021870.17 ENSMUSG00000021870 ENSMUST00000144737 Slmap protein_coding Interval_50793 chr14 19875995 19876406 + 0 NA intron (ENSMUSG00000043004.13, intron 3 of 3) protein_coding-intron (ENSMUSG00000043004.13, intron 5 of 5) 9220 ENSMUSG00000114436.1 ENSMUSG00000114436 ENSMUST00000224546 Gm48283 lincRNA Interval_119686 chr4 139212140 139212364 + 0 NA intron (ENSMUSG00000028745.18, intron 1 of 3) protein_coding-intron (ENSMUSG00000028745.18, intron 1 of 8) 18141 ENSMUSG00000028745.18 ENSMUSG00000028745 ENSMUST00000132385 Capzb protein_coding Interval_168596 chr9 83988910 83989109 + 0 NA intron (ENSMUSG00000032263.14, intron 4 of 10) protein_coding-intron (ENSMUSG00000032263.14, intron 4 of 10) -22002 ENSMUSG00000101077.1 ENSMUSG00000101077 ENSMUST00000185454 Gm29164 processed_pseudogene Interval_138728 chr6 91472366 91474595 + 0 NA promoter-TSS (ENSMUSG00000030095.10) protein_coding-promoter-TSS (ENSMUSG00000030095.10) -31 ENSMUSG00000034203.8 ENSMUSG00000034203 ENSMUST00000205802 Chchd4 protein_coding Interval_141649 chr6 131904522 131905150 + 0 NA Intergenic Intergenic 24168 ENSMUSG00000107983.1 ENSMUSG00000107983 ENSMUST00000203562 Gm43973 processed_pseudogene Interval_106887 chr3 101570079 101571486 + 0 NA Intergenic Intergenic 10273 ENSMUSG00000104737.1 ENSMUSG00000104737 ENSMUST00000197360 Gm42937 sense_intronic Interval_158395 chr8 83403843 83404609 + 0 NA intron (ENSMUSG00000002190.13, intron 5 of 14) protein_coding-intron (ENSMUSG00000002190.13, intron 5 of 14) 14348 ENSMUSG00000002190.13 ENSMUSG00000002190 ENSMUST00000109831 Clgn protein_coding Interval_59967 chr15 62345906 62346216 + 0 NA intron (ENSMUSG00000097039.8, intron 6 of 9) lincRNA-intron (ENSMUSG00000097039.8, intron 6 of 9) -126729 ENSMUSG00000101167.1 ENSMUSG00000101167 ENSMUST00000151919 Macroh2a3 processed_pseudogene Interval_96753 chr2 127760809 127761172 + 0 NA intron (ENSMUSG00000027378.16, intron 12 of 19) protein_coding-intron (ENSMUSG00000027378.16, intron 12 of 19) -6920 ENSMUSG00000027378.16 ENSMUSG00000027378 ENSMUST00000148033 Nphp1 protein_coding Interval_53196 chr14 55062038 55063273 + 0 NA exon (ENSMUSG00000040721.9, exon 10 of 10) protein_coding-exon (ENSMUSG00000040721.9, exon 10 of 10) 7162 ENSMUSG00000100162.2 ENSMUSG00000100162 ENSMUST00000185121 Gm20687 antisense Interval_108137 chr3 121798361 121799366 + 0 NA intron (ENSMUSG00000028127.10, intron 1 of 1) protein_coding-intron (ENSMUSG00000028127.10, intron 1 of 22) -10291 ENSMUSG00000105597.1 ENSMUSG00000105597 ENSMUST00000198169 4633401B06Rik TEC Interval_39619 chr12 91605996 91608450 + 0 NA Intergenic Intergenic 10454 ENSMUSG00000113943.1 ENSMUSG00000113943 ENSMUST00000222304 Gm47804 lincRNA Interval_76112 chr17 75088814 75089063 + 0 NA intron (ENSMUSG00000001870.16, intron 3 of 34) protein_coding-intron (ENSMUSG00000001870.16, intron 3 of 33) -76269 ENSMUSG00000084025.1 ENSMUSG00000084025 ENSMUST00000120159 Gm6276 processed_pseudogene Interval_154906 chr8 24981172 24982048 + 0 NA TTS (ENSMUSG00000031555.15) protein_coding-TTS (ENSMUSG00000031555.15) 16180 ENSMUSG00000031555.15 ENSMUSG00000031555 ENSMUST00000211319 Adam9 protein_coding Interval_128443 chr5 113344469 113347814 + 0 NA Intergenic Intergenic -8496 ENSMUSG00000104840.1 ENSMUSG00000104840 ENSMUST00000195977 Mir7230 miRNA Interval_172268 chrX 12133303 12136075 + 0 NA exon (ENSMUSG00000040363.15, exon 4 of 5) protein_coding-exon (ENSMUSG00000040363.15, exon 4 of 5) 25657 ENSMUSG00000040363.15 ENSMUSG00000040363 ENSMUST00000209776 Bcor protein_coding Interval_74345 chr17 49196109 49196489 + 0 NA Intergenic Intergenic -30541 ENSMUSG00000117115.1 ENSMUSG00000117115 ENSMUST00000233339 Gm9586 processed_pseudogene Interval_87687 chr19 54977221 54977533 + 0 NA Intergenic Intergenic -40653 ENSMUSG00000118207.1 ENSMUSG00000118207 ENSMUST00000237661 Gm50191 lincRNA Interval_108557 chr3 128753845 128754092 + 0 NA intron (ENSMUSG00000106245.1, intron 2 of 4) lincRNA-intron (ENSMUSG00000106245.1, intron 2 of 4) -52418 ENSMUSG00000105527.1 ENSMUSG00000105527 ENSMUST00000200511 4933424H11Rik lincRNA Interval_23931 chr11 28528420 28528614 + 0 NA intron (ENSMUSG00000032878.16, intron 2 of 5) protein_coding-intron (ENSMUSG00000032878.16, intron 2 of 3) -94407 ENSMUSG00000032878.16 ENSMUSG00000032878 ENSMUST00000109501 Ccdc85a protein_coding Interval_63012 chr15 98640193 98640590 + 0 NA TTS (ENSMUSG00000003352.14) protein_coding-TTS (ENSMUSG00000003352.14) 8586 ENSMUSG00000003352.14 ENSMUSG00000003352 ENSMUST00000230064 Cacnb3 protein_coding Interval_3970 chr1 65172429 65172676 + 0 NA intron (ENSMUSG00000025950.16, intron 3 of 5) protein_coding-intron (ENSMUSG00000025950.16, intron 2 of 8) 13927 ENSMUSG00000025950.16 ENSMUSG00000025950 ENSMUST00000191459 Idh1 protein_coding Interval_82768 chr18 76963545 76963814 + 0 NA intron (ENSMUSG00000025421.15, intron 4 of 6) protein_coding-intron (ENSMUSG00000025421.15, intron 5 of 7) 19295 ENSMUSG00000025421.15 ENSMUSG00000025421 ENSMUST00000148955 Hdhd2 protein_coding Interval_156871 chr8 61349672 61349893 + 0 NA intron (ENSMUSG00000031642.9, intron 5 of 10) protein_coding-intron (ENSMUSG00000031642.9, intron 5 of 11) -11807 ENSMUSG00000031642.9 ENSMUSG00000031642 ENSMUST00000210210 Sh3rf1 protein_coding Interval_110114 chr3 153398403 153398621 + 0 NA intron (ENSMUSG00000052544.9, intron 3 of 4) protein_coding-intron (ENSMUSG00000052544.9, intron 2 of 2) 76142 ENSMUSG00000104964.1 ENSMUSG00000104964 ENSMUST00000196286 4930597L12Rik TEC Interval_52391 chr14 45550814 45552608 + 0 NA TTS (ENSMUSG00000115391.1) lincRNA-TTS (ENSMUSG00000115391.1) 2691 ENSMUSG00000115391.1 ENSMUSG00000115391 ENSMUST00000228939 Gm49123 lincRNA Interval_96199 chr2 120501198 120502435 + 0 NA intron (ENSMUSG00000079110.12, intron 6 of 13) protein_coding-intron (ENSMUSG00000079110.12, intron 13 of 20) 38044 ENSMUSG00000027288.16 ENSMUSG00000027288 ENSMUST00000147353 Zfp106 protein_coding Interval_8319 chr1 137297427 137298487 + 0 NA Intergenic Intergenic 27885 ENSMUSG00000102738.1 ENSMUSG00000102738 ENSMUST00000191810 1700006P03Rik TEC Interval_34725 chr12 8957067 8957544 + 0 NA intron (ENSMUSG00000020583.4, intron 3 of 7) protein_coding-intron (ENSMUSG00000020583.4, intron 3 of 7) 9376 ENSMUSG00000020583.4 ENSMUSG00000020583 ENSMUST00000020899 Matn3 protein_coding Interval_151263 chr7 120426585 120426884 + 0 NA intron (ENSMUSG00000051900.12, intron 2 of 29) protein_coding-intron (ENSMUSG00000051900.12, intron 2 of 30) -48688 ENSMUSG00000051900.12 ENSMUSG00000051900 ENSMUST00000153845 Abca16 protein_coding Interval_65541 chr16 23164233 23166186 + 0 NA Intergenic Intergenic -10071 ENSMUSG00000068463.4 ENSMUSG00000068463 ENSMUST00000232062 B630019A10Rik antisense Interval_121871 chr5 9042343 9043037 + 0 NA intron (ENSMUSG00000114430.1, intron 2 of 2) lincRNA-intron (ENSMUSG00000114430.1, intron 2 of 2) 7910 ENSMUSG00000114430.1 ENSMUSG00000114430 ENSMUST00000224996 Gm40264 lincRNA Interval_154805 chr8 23504836 23505125 + 0 NA Intergenic Intergenic 93478 ENSMUSG00000031548.7 ENSMUSG00000031548 ENSMUST00000033952 Sfrp1 protein_coding Interval_87773 chr19 55767091 55767589 + 0 NA intron (ENSMUSG00000024985.20, intron 4 of 14) protein_coding-intron (ENSMUSG00000024985.20, intron 3 of 11) 25076 ENSMUSG00000024985.20 ENSMUSG00000024985 ENSMUST00000148666 Tcf7l2 protein_coding Interval_34797 chr12 11301950 11303437 + 0 NA intron (ENSMUSG00000020608.7, intron 21 of 25) protein_coding-intron (ENSMUSG00000020608.7, intron 22 of 26) 2806 ENSMUSG00000098879.1 ENSMUSG00000098879 ENSMUST00000184262 Mir7675 miRNA Interval_168107 chr9 76607792 76607980 + 0 NA Intergenic Intergenic -40770 ENSMUSG00000032358.12 ENSMUSG00000032358 ENSMUST00000098546 Fam83b protein_coding Interval_50866 chr14 20310823 20311278 + 0 NA promoter-TSS (ENSMUSG00000021809.10) protein_coding-promoter-TSS (ENSMUSG00000021809.10) -379 ENSMUSG00000021809.10 ENSMUSG00000021809 ENSMUST00000225728 Nudt13 protein_coding Interval_79818 chr18 35286161 35286756 + 0 NA intron (ENSMUSG00000024357.10, intron 2 of 2) protein_coding-intron (ENSMUSG00000024357.10, intron 7 of 9) 22429 ENSMUSG00000117876.1 ENSMUSG00000117876 ENSMUST00000236119 Gm50146 antisense Interval_134223 chr6 23203073 23203314 + 0 NA Intergenic Intergenic -35779 ENSMUSG00000107032.2 ENSMUSG00000107032 ENSMUST00000096093 Gm5301 processed_pseudogene Interval_86937 chr19 45100647 45100848 + 0 NA intron (ENSMUSG00000117848.1, intron 3 of 4) lincRNA-intron (ENSMUSG00000117848.1, intron 3 of 4) 13696 ENSMUSG00000117848.1 ENSMUSG00000117848 ENSMUST00000237139 Gm35867 lincRNA Interval_15779 chr10 56424915 56426938 + 0 NA Intergenic Intergenic -6055 ENSMUSG00000112833.1 ENSMUSG00000112833 ENSMUST00000218830 Gm36595 lincRNA Interval_126310 chr5 86419306 86420168 + 0 NA intron (ENSMUSG00000072845.3, intron 7 of 8) protein_coding-intron (ENSMUSG00000072845.3, intron 7 of 8) -1392 ENSMUSG00000072845.3 ENSMUSG00000072845 ENSMUST00000198504 Tmprss11a protein_coding Interval_112927 chr4 46129520 46130613 + 0 NA intron (ENSMUSG00000035495.15, intron 3 of 5) protein_coding-intron (ENSMUSG00000035495.15, intron 3 of 9) 8347 ENSMUSG00000035495.15 ENSMUSG00000035495 ENSMUST00000156021 Tstd2 protein_coding Interval_95702 chr2 114418471 114420107 + 0 NA Intergenic Intergenic -145854 ENSMUSG00000101266.1 ENSMUSG00000101266 ENSMUST00000187452 Gm29234 lincRNA Interval_15393 chr10 45373239 45374029 + 0 NA Intergenic Intergenic 20126 ENSMUSG00000071317.4 ENSMUSG00000071317 ENSMUST00000213557 Bves protein_coding Interval_50264 chr14 11536086 11536658 + 0 NA Intergenic Intergenic -15602 ENSMUSG00000114849.1 ENSMUSG00000114849 ENSMUST00000224543 Gm48595 lincRNA Interval_158654 chr8 84979645 84980512 + 0 NA Intergenic Intergenic -1360 ENSMUSG00000052837.7 ENSMUSG00000052837 ENSMUST00000064922 Junb protein_coding Interval_25721 chr11 51124974 51126251 + 0 NA Intergenic Intergenic -12412 ENSMUSG00000080918.1 ENSMUSG00000080918 ENSMUST00000121196 Gm12202 unprocessed_pseudogene Interval_169180 chr9 95319576 95319959 + 0 NA Intergenic Intergenic 86955 ENSMUSG00000033350.7 ENSMUSG00000033350 ENSMUST00000036267 Chst2 protein_coding Interval_165120 chr9 44665163 44665493 + 0 NA promoter-TSS (ENSMUSG00000111326.1) processed_pseudogene-promoter-TSS (ENSMUSG00000111326.1) -612 ENSMUSG00000111326.1 ENSMUSG00000111326 ENSMUST00000213963 Gm3953 processed_pseudogene Interval_62697 chr15 96339189 96339417 + 0 NA intron (ENSMUSG00000033237.19, intron 3 of 4) protein_coding-intron (ENSMUSG00000033237.19, intron 3 of 20) -39511 ENSMUSG00000033237.19 ENSMUSG00000033237 ENSMUST00000176739 Arid2 protein_coding Interval_75342 chr17 66012226 66012835 + 0 NA intron (ENSMUSG00000034647.15, intron 8 of 8) protein_coding-intron (ENSMUSG00000034647.15, intron 8 of 12) 6825 ENSMUSG00000117074.1 ENSMUSG00000117074 ENSMUST00000233477 Gm49925 processed_pseudogene Interval_49239 chr13 109742831 109743072 + 0 NA intron (ENSMUSG00000021699.17, intron 3 of 15) protein_coding-intron (ENSMUSG00000021699.17, intron 2 of 14) -160858 ENSMUSG00000084651.1 ENSMUSG00000084651 ENSMUST00000122702 Mir1904 miRNA Interval_78080 chr18 7750405 7750862 + 0 NA Intergenic Intergenic -57907 ENSMUSG00000117542.1 ENSMUSG00000117542 ENSMUST00000234387 Gm18763 processed_pseudogene Interval_119173 chr4 135979852 135980311 + 0 NA promoter-TSS (ENSMUSG00000028669.15) protein_coding-promoter-TSS (ENSMUSG00000028669.15) 5857 ENSMUSG00000028669.15 ENSMUSG00000028669 ENSMUST00000125394 Pithd1 protein_coding Interval_125650 chr5 73043957 73044293 + 0 NA exon (ENSMUSG00000107171.1, exon 1 of 1) TEC-exon (ENSMUSG00000107171.1, exon 1 of 1) 1029 ENSMUSG00000107171.1 ENSMUSG00000107171 ENSMUST00000202292 Gm42572 TEC Interval_989 chr1 13647851 13648069 + 0 NA intron (ENSMUSG00000025937.6, intron 2 of 6) protein_coding-intron (ENSMUSG00000025937.6, intron 2 of 6) -5212 ENSMUSG00000102982.1 ENSMUSG00000102982 ENSMUST00000194537 Gm38319 TEC Interval_121769 chr5 7723309 7724263 + 0 NA intron (ENSMUSG00000105068.1, intron 3 of 5) lincRNA-intron (ENSMUSG00000105068.1, intron 3 of 5) -133322 ENSMUSG00000081226.1 ENSMUSG00000081226 ENSMUST00000118633 Gm8802 processed_pseudogene Interval_52041 chr14 34777674 34778105 + 0 NA Intergenic Intergenic -7834 ENSMUSG00000115109.1 ENSMUSG00000115109 ENSMUST00000228194 Gm49032 lincRNA Interval_4010 chr1 66344471 66344673 + 0 NA intron (ENSMUSG00000015222.18, intron 3 of 4) protein_coding-intron (ENSMUSG00000015222.18, intron 2 of 11) -15776 ENSMUSG00000073656.4 ENSMUSG00000073656 ENSMUST00000147494 Gm10558 antisense Interval_72284 chr17 28975953 28976155 + 0 NA intron (ENSMUSG00000024006.17, intron 6 of 6) protein_coding-intron (ENSMUSG00000024006.17, intron 9 of 13) 14094 ENSMUSG00000084632.1 ENSMUSG00000084632 ENSMUST00000122683 Gm23887 snRNA Interval_164919 chr9 43087443 43087713 + 0 NA intron (ENSMUSG00000059495.14, intron 1 of 4) protein_coding-intron (ENSMUSG00000059495.14, intron 1 of 41) 28958 ENSMUSG00000048503.7 ENSMUSG00000048503 ENSMUST00000216126 Tlcd5 protein_coding Interval_146632 chr7 48898279 48898487 + 0 NA promoter-TSS (ENSMUSG00000085995.2) processed_transcript-promoter-TSS (ENSMUSG00000085995.2) 11153 ENSMUSG00000085995.2 ENSMUSG00000085995 ENSMUST00000208790 Gm2788 processed_transcript Interval_64424 chr16 11276560 11277788 + 0 NA Intergenic Intergenic -22729 ENSMUSG00000088544.1 ENSMUSG00000088544 ENSMUST00000157919 Mir1945 miRNA Interval_78289 chr18 11669618 11669967 + 0 NA intron (ENSMUSG00000041238.16, intron 1 of 7) protein_coding-intron (ENSMUSG00000041238.16, intron 2 of 18) -12008 ENSMUSG00000117634.1 ENSMUSG00000117634 ENSMUST00000235010 Gm50069 antisense Interval_66466 chr16 34049788 34050772 + 0 NA intron (ENSMUSG00000061751.16, intron 35 of 48) protein_coding-intron (ENSMUSG00000061751.16, intron 36 of 59) -42823 ENSMUSG00000116835.1 ENSMUSG00000116835 ENSMUST00000231993 Gm49594 processed_pseudogene Interval_56647 chr14 121124159 121126022 + 0 NA intron (ENSMUSG00000025555.14, intron 1 of 7) protein_coding-intron (ENSMUSG00000025555.14, intron 2 of 26) 23011 ENSMUSG00000025555.14 ENSMUSG00000025555 ENSMUST00000137971 Farp1 protein_coding Interval_167458 chr9 69492758 69492965 + 0 NA Intergenic Intergenic 6078 ENSMUSG00000032231.14 ENSMUSG00000032231 ENSMUST00000154591 Anxa2 protein_coding Interval_50830 chr14 20095078 20095715 + 0 NA intron (ENSMUSG00000045107.5, intron 1 of 1) protein_coding-intron (ENSMUSG00000045107.5, intron 1 of 1) -37099 ENSMUSG00000114498.1 ENSMUSG00000114498 ENSMUST00000224881 Gm48339 processed_pseudogene Interval_60760 chr15 76593401 76596882 + 0 NA TTS (ENSMUSG00000034022.8) protein_coding-TTS (ENSMUSG00000034022.8) 5021 ENSMUSG00000116145.1 ENSMUSG00000116145 ENSMUST00000230081 5730521K06Rik TEC Interval_85633 chr19 29201172 29201528 + 0 NA Intergenic Intergenic 41232 ENSMUSG00000068466.6 ENSMUSG00000068466 ENSMUST00000084171 Gm5518 processed_pseudogene Interval_599 chr1 8557678 8558769 + 0 NA intron (ENSMUSG00000025909.16, intron 14 of 20) protein_coding-intron (ENSMUSG00000025909.16, intron 10 of 16) -26910 ENSMUSG00000102253.1 ENSMUSG00000102253 ENSMUST00000194602 Gm38259 TEC Interval_11820 chr1 185815020 185815389 + 0 NA Intergenic Intergenic 63681 ENSMUSG00000102546.1 ENSMUSG00000102546 ENSMUST00000194568 Gm9722 processed_pseudogene Interval_156448 chr8 48298354 48299628 + 0 NA exon (ENSMUSG00000031561.16, exon 16 of 29) protein_coding-exon (ENSMUSG00000031561.16, exon 16 of 29) -28006 ENSMUSG00000110480.1 ENSMUSG00000110480 ENSMUST00000212653 Gm32842 processed_pseudogene Interval_136226 chr6 52170310 52170992 + 0 NA exon (ENSMUSG00000079560.13, exon 5 of 5) protein_coding-exon (ENSMUSG00000079560.13, exon 5 of 5) -2230 ENSMUSG00000087626.1 ENSMUSG00000087626 ENSMUST00000133723 Gm15050 antisense Interval_119705 chr4 139345059 139346667 + 0 NA exon (ENSMUSG00000080708.1, exon 1 of 1) processed_pseudogene-exon (ENSMUSG00000080708.1, exon 1 of 1) 317 ENSMUSG00000080708.1 ENSMUSG00000080708 ENSMUST00000117963 Ccnd3-ps processed_pseudogene Interval_41963 chr13 5675779 5676245 + 0 NA intron (ENSMUSG00000114053.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000114053.1, intron 1 of 2) -104884 ENSMUSG00000114053.1 ENSMUSG00000114053 ENSMUST00000223254 Gm35330 lincRNA Interval_159310 chr8 93298653 93299464 + 0 NA Intergenic Intergenic 38250 ENSMUSG00000057074.6 ENSMUSG00000057074 ENSMUST00000044602 Ces1g protein_coding Interval_25141 chr11 44503786 44503996 + 0 NA Intergenic Intergenic 24684 ENSMUSG00000082750.1 ENSMUSG00000082750 ENSMUST00000119188 Gm12156 processed_pseudogene Interval_41875 chr13 3817114 3817412 + 0 NA Intergenic Intergenic -8256 ENSMUSG00000114091.1 ENSMUSG00000114091 ENSMUST00000220802 Gm40655 sense_overlapping Interval_40161 chr12 102128026 102129930 + 0 NA promoter-TSS (ENSMUSG00000041771.14) protein_coding-promoter-TSS (ENSMUSG00000041771.14) -441 ENSMUSG00000041771.14 ENSMUSG00000041771 ENSMUST00000235018 Slc24a4 protein_coding Interval_118238 chr4 129726117 129726446 + 0 NA intron (ENSMUSG00000028790.13, intron 3 of 11) protein_coding-intron (ENSMUSG00000028790.13, intron 3 of 8) -12461 ENSMUSG00000028790.13 ENSMUSG00000028790 ENSMUST00000139281 Khdrbs1 protein_coding Interval_85795 chr19 31704133 31704423 + 0 NA intron (ENSMUSG00000052920.16, intron 1 of 17) protein_coding-intron (ENSMUSG00000052920.16, intron 1 of 17) -164503 ENSMUSG00000052595.8 ENSMUSG00000052595 ENSMUST00000225165 A1cf protein_coding Interval_40511 chr12 105382788 105383530 + 0 NA exon (ENSMUSG00000097929.9, exon 3 of 3) protein_coding-exon (ENSMUSG00000097929.9, exon 3 of 3) -20860 ENSMUSG00000114181.1 ENSMUSG00000114181 ENSMUST00000222653 Gm46376 lincRNA Interval_146137 chr7 44287784 44288299 + 0 NA Intergenic Intergenic -5643 ENSMUSG00000108343.1 ENSMUSG00000108343 ENSMUST00000206864 Gm18307 processed_pseudogene Interval_111865 chr4 32091164 32091802 + 0 NA Intergenic Intergenic 39745 ENSMUSG00000082398.1 ENSMUSG00000082398 ENSMUST00000118472 Gm11927 processed_pseudogene Interval_28998 chr11 79806434 79807324 + 0 NA intron (ENSMUSG00000086474.2, intron 3 of 4) lincRNA-intron (ENSMUSG00000086474.2, intron 3 of 4) -1707 ENSMUSG00000086474.2 ENSMUSG00000086474 ENSMUST00000162268 9130204K15Rik lincRNA Interval_55591 chr14 94172712 94172902 + 0 NA Intergenic Intergenic 84358 ENSMUSG00000115613.1 ENSMUSG00000115613 ENSMUST00000228013 Gm48982 processed_pseudogene Interval_94938 chr2 102030743 102031071 + 0 NA intron (ENSMUSG00000048058.17, intron 4 of 5) protein_coding-intron (ENSMUSG00000048058.17, intron 4 of 5) -8722 ENSMUSG00000085417.1 ENSMUSG00000085417 ENSMUST00000123891 Gm13919 antisense Interval_9985 chr1 164552235 164553629 + 0 NA Intergenic Intergenic -22523 ENSMUSG00000102389.1 ENSMUSG00000102389 ENSMUST00000191913 D630023O14Rik TEC Interval_85664 chr19 29478046 29478237 + 0 NA intron (ENSMUSG00000097855.8, intron 2 of 5) antisense-intron (ENSMUSG00000097855.8, intron 2 of 5) 42829 ENSMUSG00000097855.8 ENSMUSG00000097855 ENSMUST00000180737 A930007I19Rik antisense Interval_29548 chr11 84834872 84835332 + 0 NA intron (ENSMUSG00000020530.14, intron 12 of 13) protein_coding-intron (ENSMUSG00000020530.14, intron 13 of 14) 5924 ENSMUSG00000086799.1 ENSMUSG00000086799 ENSMUST00000126016 4930502E09Rik processed_transcript Interval_48180 chr13 97030229 97031027 + 0 NA intron (ENSMUSG00000052075.7, intron 1 of 2) protein_coding-intron (ENSMUSG00000052075.7, intron 1 of 2) 3721 ENSMUSG00000052075.7 ENSMUSG00000052075 ENSMUST00000221277 1700029F12Rik protein_coding Interval_173407 chrX 90242456 90242675 + 0 NA Intergenic Intergenic 176807 ENSMUSG00000082479.3 ENSMUSG00000082479 ENSMUST00000120395 Gm4746 processed_pseudogene Interval_44238 chr13 42711483 42711969 + 0 NA intron (ENSMUSG00000054728.17, intron 3 of 13) protein_coding-intron (ENSMUSG00000054728.17, intron 1 of 11) 76532 ENSMUSG00000089710.1 ENSMUSG00000089710 ENSMUST00000160241 Gm15810 antisense Interval_6904 chr1 120556876 120557125 + 0 NA Intergenic Intergenic -45418 ENSMUSG00000058665.8 ENSMUSG00000058665 ENSMUST00000079721 En1 protein_coding Interval_105805 chr3 89421183 89421925 + 0 NA promoter-TSS (ENSMUSG00000042626.13) protein_coding-promoter-TSS (ENSMUSG00000042626.13) 3003 ENSMUSG00000042626.13 ENSMUSG00000042626 ENSMUST00000146306 Shc1 protein_coding Interval_30342 chr11 93719128 93719895 + 0 NA Intergenic Intergenic 24429 ENSMUSG00000080872.1 ENSMUSG00000080872 ENSMUST00000122414 Gm11506 processed_pseudogene Interval_171243 chr9 115568621 115568970 + 0 NA Intergenic Intergenic 57923 ENSMUSG00000094630.1 ENSMUSG00000094630 ENSMUST00000082810 n-R5s92 rRNA Interval_61842 chr15 84604632 84605363 + 0 NA Intergenic Intergenic -27880 ENSMUSG00000116409.1 ENSMUSG00000116409 ENSMUST00000229199 Gm34095 lincRNA Interval_3308 chr1 56668077 56669037 + 0 NA Intergenic Intergenic -31122 ENSMUSG00000045336.5 ENSMUSG00000045336 ENSMUST00000062085 Hsfy2 protein_coding Interval_87438 chr19 50677729 50679225 + 0 NA promoter-TSS (ENSMUSG00000043531.16) protein_coding-promoter-TSS (ENSMUSG00000043531.16) 8 ENSMUSG00000043531.16 ENSMUSG00000043531 ENSMUST00000209783 Sorcs1 protein_coding Interval_173635 chrX 101329468 101330100 + 0 NA Intergenic Intergenic 30590 ENSMUSG00000031302.16 ENSMUSG00000031302 ENSMUST00000144860 Nlgn3 protein_coding Interval_153175 chr7 142081908 142083019 + 0 NA exon (ENSMUSG00000037887.11, exon 7 of 7) protein_coding-exon (ENSMUSG00000037887.11, exon 7 of 7) -4026 ENSMUSG00000077409.1 ENSMUSG00000077409 ENSMUST00000104221 Gm25416 snRNA Interval_127213 chr5 101425633 101426674 + 0 NA Intergenic Intergenic 80176 ENSMUSG00000106610.1 ENSMUSG00000106610 ENSMUST00000199021 Gm43103 processed_pseudogene Interval_147273 chr7 65370376 65371763 + 0 NA promoter-TSS (ENSMUSG00000030516.14) protein_coding-promoter-TSS (ENSMUSG00000030516.14) -54 ENSMUSG00000030516.14 ENSMUSG00000030516 ENSMUST00000206438 Tjp1 protein_coding Interval_30221 chr11 90957642 90958009 + 0 NA Intergenic Intergenic -96477 ENSMUSG00000083764.1 ENSMUSG00000083764 ENSMUST00000118450 Gm11516 processed_pseudogene Interval_114716 chr4 84229286 84229802 + 0 NA Intergenic Intergenic 62386 ENSMUSG00000028487.18 ENSMUSG00000028487 ENSMUST00000176370 Bnc2 protein_coding Interval_53809 chr14 62036250 62038491 + 0 NA Intergenic Intergenic 25051 ENSMUSG00000114368.1 ENSMUSG00000114368 ENSMUST00000224570 Gm47953 processed_pseudogene Interval_8878 chr1 151737077 151737892 + 0 NA Intergenic Intergenic 17534 ENSMUSG00000100594.1 ENSMUSG00000100594 ENSMUST00000186444 2810414N06Rik lincRNA Interval_23795 chr11 26310899 26311449 + 0 NA Intergenic Intergenic 26529 ENSMUSG00000065889.1 ENSMUSG00000065889 ENSMUST00000083955 Gm22868 snRNA Interval_156099 chr8 44554132 44554468 + 0 NA Intergenic Intergenic -6226 ENSMUSG00000092685.1 ENSMUSG00000092685 ENSMUST00000174944 Gm26241 miRNA Interval_104467 chr3 66015255 66016044 + 0 NA Intergenic Intergenic 15870 ENSMUSG00000103369.1 ENSMUSG00000103369 ENSMUST00000192096 Gm6546 processed_pseudogene Interval_124521 chr5 50006272 50007044 + 0 NA TTS (ENSMUSG00000029090.12) protein_coding-TTS (ENSMUSG00000029090.12) 51987 ENSMUSG00000029090.12 ENSMUSG00000029090 ENSMUST00000199132 Adgra3 protein_coding Interval_130827 chr5 131022486 131022729 + 0 NA intron (ENSMUSG00000034040.16, intron 5 of 5) protein_coding-intron (ENSMUSG00000034040.16, intron 5 of 10) 20363 ENSMUSG00000106729.1 ENSMUSG00000106729 ENSMUST00000200842 Gm43165 TEC Interval_136984 chr6 65510159 65510911 + 0 NA Intergenic Intergenic -14778 ENSMUSG00000044162.12 ENSMUSG00000044162 ENSMUST00000204241 Tnip3 protein_coding Interval_21953 chr11 5406051 5406436 + 0 NA intron (ENSMUSG00000041961.14, intron 1 of 3) protein_coding-intron (ENSMUSG00000041961.14, intron 1 of 8) -24503 ENSMUSG00000041961.14 ENSMUSG00000041961 ENSMUST00000143746 Znrf3 protein_coding Interval_80988 chr18 52406581 52406838 + 0 NA Intergenic Intergenic -59013 ENSMUSG00000024528.8 ENSMUSG00000024528 ENSMUST00000237434 Srfbp1 protein_coding Interval_71073 chr17 17674720 17675004 + 0 NA Intergenic Intergenic -15975 ENSMUSG00000116892.1 ENSMUSG00000116892 ENSMUST00000231401 Gm49787 processed_pseudogene Interval_137512 chr6 72828237 72829457 + 0 NA Intergenic Intergenic 67072 ENSMUSG00000107610.1 ENSMUSG00000107610 ENSMUST00000205107 D530018E20Rik TEC Interval_67773 chr16 57099568 57099872 + 0 NA Intergenic Intergenic -28368 ENSMUSG00000046748.8 ENSMUSG00000046748 ENSMUST00000227043 Tmem45a2 protein_coding Interval_54279 chr14 67096726 67098324 + 0 NA Intergenic Intergenic 22695 ENSMUSG00000098365.1 ENSMUSG00000098365 ENSMUST00000184709 Gm27647 miRNA Interval_29574 chr11 85012620 85013565 + 0 NA intron (ENSMUSG00000000804.14, intron 26 of 33) protein_coding-intron (ENSMUSG00000000804.14, intron 7 of 14) 55267 ENSMUSG00000000805.18 ENSMUSG00000000805 ENSMUST00000108076 Car4 protein_coding Interval_109805 chr3 147642906 147644018 + 0 NA Intergenic Intergenic -7815 ENSMUSG00000103349.1 ENSMUSG00000103349 ENSMUST00000195819 Gm36888 lincRNA Interval_59613 chr15 56098968 56099338 + 0 NA Intergenic Intergenic -49321 ENSMUSG00000115678.1 ENSMUSG00000115678 ENSMUST00000228202 Gm49212 lincRNA Interval_120172 chr4 143183902 143184350 + 0 NA intron (ENSMUSG00000057637.13, intron 2 of 3) protein_coding-intron (ENSMUSG00000057637.13, intron 2 of 9) 17523 ENSMUSG00000083826.1 ENSMUSG00000083826 ENSMUST00000118638 Gm13039 processed_pseudogene Interval_127949 chr5 109757066 109758151 + 0 NA TTS (ENSMUSG00000049477.5) processed_pseudogene-TTS (ENSMUSG00000049477.5) 279 ENSMUSG00000049477.5 ENSMUSG00000049477 ENSMUST00000061226 Gm8508 processed_pseudogene Interval_120224 chr4 144506275 144506971 + 0 NA intron (ENSMUSG00000118540.1, intron 1 of 1) unprocessed_pseudogene-intron (ENSMUSG00000118540.1, intron 1 of 1) -7675 ENSMUSG00000082835.1 ENSMUSG00000082835 ENSMUST00000120402 Gm13118 processed_pseudogene Interval_47249 chr13 79643282 79643495 + 0 NA Intergenic Intergenic 188418 ENSMUSG00000096005.1 ENSMUSG00000096005 ENSMUST00000179499 Gm24863 snRNA Interval_104710 chr3 69626976 69627504 + 0 NA Intergenic Intergenic -28280 ENSMUSG00000043300.2 ENSMUSG00000043300 ENSMUST00000061826 B3galnt1 protein_coding Interval_76574 chr17 81394340 81394574 + 0 NA intron (ENSMUSG00000054640.15, intron 10 of 11) protein_coding-intron (ENSMUSG00000054640.15, intron 9 of 9) 23624 ENSMUSG00000117413.1 ENSMUSG00000117413 ENSMUST00000234591 Gm50044 antisense Interval_170664 chr9 109956055 109956768 + 0 NA intron (ENSMUSG00000032479.15, intron 1 of 3) protein_coding-intron (ENSMUSG00000032479.15, intron 1 of 18) -14022 ENSMUSG00000106208.1 ENSMUSG00000106208 ENSMUST00000200117 Gm4734 processed_pseudogene Interval_69764 chr16 96108454 96108796 + 0 NA intron (ENSMUSG00000117270.1, intron 2 of 3) lincRNA-intron (ENSMUSG00000117270.1, intron 2 of 4) 11420 ENSMUSG00000117270.1 ENSMUSG00000117270 ENSMUST00000233464 Gm49953 lincRNA Interval_127681 chr5 106595977 106596399 + 0 NA intron (ENSMUSG00000098302.1, intron 2 of 2) processed_transcript-intron (ENSMUSG00000098302.1, intron 2 of 2) -12910 ENSMUSG00000091096.1 ENSMUSG00000091096 ENSMUST00000167618 Gm17304 protein_coding Interval_148834 chr7 89181161 89181773 + 0 NA intron (ENSMUSG00000039428.11, intron 4 of 5) protein_coding-intron (ENSMUSG00000039428.11, intron 6 of 14) 35630 ENSMUSG00000109576.1 ENSMUSG00000109576 ENSMUST00000208963 Gm44704 TEC Interval_42468 chr13 13836209 13837273 + 0 NA Intergenic Intergenic -5501 ENSMUSG00000113493.1 ENSMUSG00000113493 ENSMUST00000220697 Gm7441 processed_pseudogene Interval_149427 chr7 98430606 98431042 + 0 NA Intergenic Intergenic 6695 ENSMUSG00000108346.1 ENSMUSG00000108346 ENSMUST00000205826 Gm44980 processed_pseudogene Interval_56916 chr14 123221845 123222138 + 0 NA intron (ENSMUSG00000115016.1, intron 4 of 4) processed_transcript-intron (ENSMUSG00000115016.1, intron 4 of 4) -56506 ENSMUSG00000115758.1 ENSMUSG00000115758 ENSMUST00000226283 Gm49294 processed_pseudogene Interval_153410 chr7 144489958 144490254 + 0 NA promoter-TSS (ENSMUSG00000037519.17) protein_coding-promoter-TSS (ENSMUSG00000037519.17) -3092 ENSMUSG00000037519.17 ENSMUSG00000037519 ENSMUST00000183106 Ppfia1 protein_coding Interval_172791 chrX 49265446 49265768 + 0 NA intron (ENSMUSG00000031109.16, intron 1 of 3) protein_coding-intron (ENSMUSG00000031109.16, intron 2 of 15) 79630 ENSMUSG00000087369.1 ENSMUSG00000087369 ENSMUST00000144294 Gm14696 lincRNA Interval_4370 chr1 73251923 73252651 + 0 NA Intergenic Intergenic -16777 ENSMUSG00000101112.1 ENSMUSG00000101112 ENSMUST00000190578 Gm29185 lincRNA Interval_68356 chr16 74057743 74058017 + 0 NA intron (ENSMUSG00000052516.19, intron 2 of 21) protein_coding-intron (ENSMUSG00000052516.19, intron 2 of 25) 1153 ENSMUSG00000089033.1 ENSMUSG00000089033 ENSMUST00000158408 Gm22163 snoRNA Interval_126316 chr5 86510894 86511081 + 0 NA intron (ENSMUSG00000079451.9, intron 1 of 8) protein_coding-intron (ENSMUSG00000079451.9, intron 1 of 9) -20348 ENSMUSG00000079451.9 ENSMUSG00000079451 ENSMUST00000199703 Tmprss11g protein_coding Interval_170497 chr9 108317783 108318008 + 0 NA intron (ENSMUSG00000007815.13, intron 2 of 5) protein_coding-intron (ENSMUSG00000007815.13, intron 2 of 5) 11098 ENSMUSG00000007815.13 ENSMUSG00000007815 ENSMUST00000193424 Rhoa protein_coding Interval_69695 chr16 95617749 95618534 + 0 NA Intergenic Intergenic -84314 ENSMUSG00000022895.16 ENSMUSG00000022895 ENSMUST00000233578 Ets2 protein_coding Interval_174017 chrX 129749202 129750645 + 0 NA promoter-TSS (ENSMUSG00000034480.18) protein_coding-promoter-TSS (ENSMUSG00000034480.18) 181 ENSMUSG00000034480.18 ENSMUSG00000034480 ENSMUST00000133457 Diaph2 protein_coding Interval_119118 chr4 135661152 135662056 + 0 NA Intergenic Intergenic -24683 ENSMUSG00000062157.6 ENSMUSG00000062157 ENSMUST00000074408 Ifnlr1 protein_coding Interval_25199 chr11 45190629 45191066 + 0 NA promoter-TSS (ENSMUSG00000103248.1) TEC-promoter-TSS (ENSMUSG00000103248.1) -975 ENSMUSG00000103248.1 ENSMUSG00000103248 ENSMUST00000193653 Gm38087 TEC Interval_44934 chr13 50322125 50322825 + 0 NA Intergenic Intergenic 54499 ENSMUSG00000114035.1 ENSMUSG00000114035 ENSMUST00000222366 Gm31126 lincRNA Interval_113991 chr4 62305612 62307377 + 0 NA intron (ENSMUSG00000066151.12, intron 17 of 20) protein_coding-intron (ENSMUSG00000066151.12, intron 23 of 27) 32001 ENSMUSG00000066151.12 ENSMUSG00000066151 ENSMUST00000131977 Fkbp15 protein_coding Interval_39232 chr12 86078923 86079841 + 0 NA promoter-TSS (ENSMUSG00000021253.7) protein_coding-promoter-TSS (ENSMUSG00000021253.7) -341 ENSMUSG00000021253.7 ENSMUSG00000021253 ENSMUST00000003687 Tgfb3 protein_coding Interval_63822 chr16 3755307 3755516 + 0 NA Intergenic Intergenic 7524 ENSMUSG00000022529.11 ENSMUSG00000022529 ENSMUST00000162207 Zfp263 protein_coding Interval_13244 chr10 13521916 13522952 + 0 NA Intergenic Intergenic 16397 ENSMUSG00000019810.15 ENSMUSG00000019810 ENSMUST00000166466 Fuca2 protein_coding Interval_113643 chr4 57230424 57230621 + 0 NA intron (ENSMUSG00000038764.14, intron 14 of 25) protein_coding-intron (ENSMUSG00000038764.14, intron 14 of 25) 58451 ENSMUSG00000085967.1 ENSMUSG00000085967 ENSMUST00000152074 Gm12530 antisense Interval_123709 chr5 34644226 34644710 + 0 NA intron (ENSMUSG00000036693.12, intron 2 of 3) protein_coding-intron (ENSMUSG00000036693.12, intron 12 of 17) 2773 ENSMUSG00000036693.12 ENSMUSG00000036693 ENSMUST00000152393 Nop14 protein_coding Interval_106214 chr3 94657569 94658335 + 0 NA intron (ENSMUSG00000005968.14, intron 1 of 3) protein_coding-intron (ENSMUSG00000005968.14, intron 1 of 12) 848 ENSMUSG00000005968.14 ENSMUSG00000005968 ENSMUST00000196496 Tuft1 protein_coding Interval_77845 chr18 4416688 4417749 + 0 NA Intergenic Intergenic 17890 ENSMUSG00000117579.1 ENSMUSG00000117579 ENSMUST00000234374 Gm50023 lincRNA Interval_111556 chr4 23100604 23101662 + 0 NA Intergenic Intergenic -159651 ENSMUSG00000087098.1 ENSMUSG00000087098 ENSMUST00000131639 Gm11884 lincRNA Interval_100783 chr2 172505248 172505594 + 0 NA Intergenic Intergenic 4270 ENSMUSG00000081344.5 ENSMUSG00000081344 ENSMUST00000121320 Gm14303 processed_pseudogene Interval_30377 chr11 93977924 93978141 + 0 NA Intergenic Intergenic -9511 ENSMUSG00000037601.11 ENSMUSG00000037601 ENSMUST00000107844 Nme1 protein_coding Interval_162510 chr9 3451033 3451961 + 0 NA intron (ENSMUSG00000025898.6, intron 12 of 17) protein_coding-intron (ENSMUSG00000025898.6, intron 12 of 17) 45966 ENSMUSG00000110660.1 ENSMUSG00000110660 ENSMUST00000211968 Gm5362 processed_pseudogene Interval_143629 chr7 13356558 13357494 + 0 NA exon (ENSMUSG00000033847.15, exon 15 of 16) protein_coding-exon (ENSMUSG00000033847.15, exon 15 of 16) -4085 ENSMUSG00000108293.1 ENSMUSG00000108293 ENSMUST00000204668 Pla2g4c-ps unprocessed_pseudogene Interval_25207 chr11 45389351 45390503 + 0 NA Intergenic Intergenic 30857 ENSMUSG00000085476.1 ENSMUSG00000085476 ENSMUST00000123422 Gm12162 lincRNA Interval_155829 chr8 39813095 39814837 + 0 NA Intergenic Intergenic -93000 ENSMUSG00000109789.1 ENSMUSG00000109789 ENSMUST00000210753 Gm2033 processed_pseudogene Interval_56217 chr14 113315390 113315753 + 0 NA exon (ENSMUSG00000058126.7, exon 1 of 1) protein_coding-exon (ENSMUSG00000058126.7, exon 1 of 1) 963 ENSMUSG00000058126.7 ENSMUSG00000058126 ENSMUST00000072359 Tpm3-rs7 protein_coding Interval_129487 chr5 120512478 120513548 + 0 NA promoter-TSS (ENSMUSG00000032754.14) protein_coding-promoter-TSS (ENSMUSG00000032754.14) 1743 ENSMUSG00000032754.14 ENSMUSG00000032754 ENSMUST00000123326 Slc8b1 protein_coding Interval_54305 chr14 67455267 67456356 + 0 NA Intergenic Intergenic -18640 ENSMUSG00000093634.1 ENSMUSG00000093634 ENSMUST00000176934 Gm10860 antisense Interval_77796 chr18 3616205 3616889 + 0 NA exon (ENSMUSG00000117506.1, exon 1 of 1) TEC-exon (ENSMUSG00000117506.1, exon 1 of 1) 266 ENSMUSG00000117506.1 ENSMUSG00000117506 ENSMUST00000234745 Gm50091 TEC Interval_153717 chr8 5106821 5107403 + 0 NA Intergenic Intergenic -1761 ENSMUSG00000023073.2 ENSMUSG00000023073 ENSMUST00000023835 Slc10a2 protein_coding Interval_100217 chr2 167721861 167722176 + 0 NA intron (ENSMUSG00000006462.6, intron 2 of 3) lincRNA-intron (ENSMUSG00000006462.6, intron 2 of 3) 30841 ENSMUSG00000006462.6 ENSMUSG00000006462 ENSMUST00000130679 A530013C23Rik lincRNA Interval_38005 chr12 73793265 73794584 + 0 NA intron (ENSMUSG00000113321.1, intron 1 of 3) lincRNA-intron (ENSMUSG00000113321.1, intron 1 of 2) 441 ENSMUSG00000113321.1 ENSMUSG00000113321 ENSMUST00000222997 Gm8075 lincRNA Interval_122 GL456359.1 19308 22488 + 0 NA NA NA NA NA Interval_111061 chr4 11566632 11566870 + 0 NA intron (ENSMUSG00000078773.11, intron 2 of 4) protein_coding-intron (ENSMUSG00000078773.11, intron 2 of 14) -9892 ENSMUSG00000078773.11 ENSMUSG00000078773 ENSMUST00000144499 Rad54b protein_coding Interval_120054 chr4 141558498 141560268 + 0 NA Intergenic Intergenic 13194 ENSMUSG00000048406.5 ENSMUSG00000048406 ENSMUST00000049927 B330016D10Rik pseudogene Interval_102118 chr3 17999357 18000322 + 0 NA Intergenic Intergenic -8967 ENSMUSG00000082896.1 ENSMUSG00000082896 ENSMUST00000119417 Gm5844 processed_pseudogene Interval_100196 chr2 167571523 167572038 + 0 NA intron (ENSMUSG00000085596.1, intron 2 of 3) processed_transcript-intron (ENSMUSG00000085596.1, intron 2 of 3) 18466 ENSMUSG00000085596.1 ENSMUSG00000085596 ENSMUST00000127006 Gm11476 processed_transcript Interval_15921 chr10 59295372 59296710 + 0 NA Intergenic Intergenic -27327 ENSMUSG00000019916.14 ENSMUSG00000019916 ENSMUST00000105466 P4ha1 protein_coding Interval_61279 chr15 80500174 80500588 + 0 NA intron (ENSMUSG00000050439.7, intron 5 of 6) protein_coding-intron (ENSMUSG00000050439.7, intron 4 of 5) 24489 ENSMUSG00000116345.1 ENSMUSG00000116345 ENSMUST00000230279 Gm19141 processed_pseudogene Interval_52717 chr14 48968657 48969267 + 0 NA Intergenic Intergenic 32874 ENSMUSG00000087754.1 ENSMUSG00000087754 ENSMUST00000157129 Gm23470 snRNA Interval_80383 chr18 40680448 40680760 + 0 NA Intergenic Intergenic -40900 ENSMUSG00000117847.1 ENSMUSG00000117847 ENSMUST00000237626 Gm31205 lincRNA Interval_57144 chr15 6909354 6910296 + 0 NA Intergenic Intergenic -35568 ENSMUSG00000022146.12 ENSMUSG00000022146 ENSMUST00000177263 Osmr protein_coding Interval_77014 chr17 85630445 85631487 + 0 NA Intergenic Intergenic -9965 ENSMUSG00000099635.1 ENSMUSG00000099635 ENSMUST00000188560 Gm28528 antisense Interval_68708 chr16 84863002 84863381 + 0 NA TTS (ENSMUSG00000008976.16) protein_coding-TTS (ENSMUSG00000008976.16) 7151 ENSMUSG00000008976.16 ENSMUSG00000008976 ENSMUST00000139101 Gabpa protein_coding Interval_50780 chr14 19809937 19810198 + 0 NA exon (ENSMUSG00000021806.4, exon 19 of 21) protein_coding-exon (ENSMUSG00000021806.4, exon 19 of 21) 12988 ENSMUSG00000021807.6 ENSMUSG00000021807 ENSMUST00000225615 Rtraf protein_coding Interval_24 GL456211.1 115714 117135 + 0 NA NA NA NA NA Interval_62928 chr15 97970031 97970570 + 0 NA TTS (ENSMUSG00000052369.8) protein_coding-TTS (ENSMUSG00000052369.8) 6044 ENSMUSG00000052369.8 ENSMUSG00000052369 ENSMUST00000231079 Tmem106c protein_coding Interval_145045 chr7 29681429 29682575 + 0 NA Intergenic Intergenic -24726 ENSMUSG00000065385.1 ENSMUSG00000065385 ENSMUST00000083451 n-R5s153 rRNA Interval_26447 chr11 57917745 57919090 + 0 NA Intergenic Intergenic 30668 ENSMUSG00000083657.1 ENSMUSG00000083657 ENSMUST00000117266 Gm12245 processed_pseudogene Interval_38940 chr12 83979458 83980197 + 0 NA exon (ENSMUSG00000090843.2, exon 2 of 15) protein_coding-exon (ENSMUSG00000090843.2, exon 2 of 15) 5025 ENSMUSG00000090843.2 ENSMUSG00000090843 ENSMUST00000164935 Heatr4 protein_coding Interval_2540 chr1 40055343 40055972 + 0 NA Intergenic Intergenic -5289 ENSMUSG00000102985.1 ENSMUSG00000102985 ENSMUST00000193054 4930456G14Rik TEC Interval_51381 chr14 27110129 27110344 + 0 NA Intergenic Intergenic -4663 ENSMUSG00000021895.10 ENSMUSG00000021895 ENSMUST00000225494 Arhgef3 protein_coding Interval_103849 chr3 53622693 53622889 + 0 NA intron (ENSMUSG00000037016.11, intron 2 of 23) protein_coding-intron (ENSMUSG00000037016.11, intron 2 of 23) 44537 ENSMUSG00000105840.1 ENSMUSG00000105840 ENSMUST00000198253 Gm6073 processed_pseudogene Interval_99815 chr2 165093000 165093211 + 0 NA Intergenic Intergenic -2355 ENSMUSG00000078935.1 ENSMUSG00000078935 ENSMUST00000109304 1700025C18Rik protein_coding Interval_38235 chr12 76563135 76563692 + 0 NA intron (ENSMUSG00000052609.9, intron 3 of 17) protein_coding-intron (ENSMUSG00000052609.9, intron 3 of 18) -15561 ENSMUSG00000112388.1 ENSMUSG00000112388 ENSMUST00000218453 AI463170 antisense Interval_91126 chr2 35283922 35284538 + 0 NA intron (ENSMUSG00000026879.14, intron 4 of 14) protein_coding-intron (ENSMUSG00000026879.14, intron 2 of 16) 3840 ENSMUSG00000106961.1 ENSMUSG00000106961 ENSMUST00000202212 Gm43128 TEC Interval_98889 chr2 155818706 155819890 + 0 NA TTS (ENSMUSG00000027612.7) protein_coding-TTS (ENSMUSG00000027612.7) 128 ENSMUSG00000074649.6 ENSMUSG00000074649 ENSMUST00000124586 BC029722 protein_coding Interval_97190 chr2 132144040 132145581 + 0 NA intron (ENSMUSG00000086756.1, intron 1 of 2) protein_coding-intron (ENSMUSG00000027340.15, intron 1 of 15) 277 ENSMUSG00000086756.1 ENSMUSG00000086756 ENSMUST00000131603 Gm14051 antisense Interval_66510 chr16 34649310 34650139 + 0 NA promoter-TSS (ENSMUSG00000022832.11) protein_coding-promoter-TSS (ENSMUSG00000022832.11) -16593 ENSMUSG00000022832.11 ENSMUSG00000022832 ENSMUST00000231612 Ropn1 protein_coding Interval_11784 chr1 185403484 185404732 + 0 NA TTS (ENSMUSG00000026615.14) protein_coding-TTS (ENSMUSG00000026615.14) -27905 ENSMUSG00000118510.1 ENSMUSG00000118510 ENSMUST00000238834 AC131980.1 processed_pseudogene Interval_174046 chrX 132577596 132578087 + 0 NA Intergenic Intergenic -23997 ENSMUSG00000077628.1 ENSMUSG00000077628 ENSMUST00000104440 Gm23768 snoRNA Interval_56585 chr14 120508549 120509852 + 0 NA Intergenic Intergenic 30756 ENSMUSG00000051615.14 ENSMUSG00000051615 ENSMUST00000062117 Rap2a protein_coding Interval_102480 chr3 27113277 27113523 + 0 NA intron (ENSMUSG00000027699.19, intron 21 of 23) protein_coding-intron (ENSMUSG00000027699.19, intron 21 of 23) 4418 ENSMUSG00000087742.1 ENSMUSG00000087742 ENSMUST00000157117 Gm25152 snoRNA Interval_126732 chr5 92384787 92385234 + 0 NA intron (ENSMUSG00000034842.16, intron 1 of 2) protein_coding-intron (ENSMUSG00000034842.16, intron 2 of 9) -19525 ENSMUSG00000060183.6 ENSMUSG00000060183 ENSMUST00000077820 Cxcl11 polymorphic_pseudogene Interval_104370 chr3 64306879 64307048 + 0 NA Intergenic Intergenic 11601 ENSMUSG00000088735.1 ENSMUSG00000088735 ENSMUST00000158110 Gm23897 snoRNA Interval_104949 chr3 79229206 79230251 + 0 NA intron (ENSMUSG00000062232.14, intron 1 of 29) protein_coding-intron (ENSMUSG00000062232.14, intron 1 of 29) 16809 ENSMUSG00000104585.1 ENSMUSG00000104585 ENSMUST00000200412 4921511C10Rik antisense Interval_88529 chr2 5853889 5854654 + 0 NA intron (ENSMUSG00000025817.12, intron 2 of 5) protein_coding-intron (ENSMUSG00000025817.12, intron 1 of 9) 8663 ENSMUSG00000056718.2 ENSMUSG00000056718 ENSMUST00000071016 Gm13199 protein_coding Interval_130913 chr5 134006170 134007694 + 0 NA Intergenic Intergenic 84519 ENSMUSG00000106800.1 ENSMUSG00000106800 ENSMUST00000202497 1700030N18Rik TEC Interval_118231 chr4 129653962 129654558 + 0 NA TTS (ENSMUSG00000003731.13) protein_coding-TTS (ENSMUSG00000003731.13) -13282 ENSMUSG00000053841.15 ENSMUSG00000053841 ENSMUST00000130017 Txlna protein_coding Interval_101739 chr3 9299300 9299888 + 0 NA Intergenic Intergenic 48992 ENSMUSG00000069114.8 ENSMUSG00000069114 ENSMUST00000155203 Zbtb10 protein_coding Interval_127711 chr5 106989072 106989426 + 0 NA Intergenic Intergenic 14703 ENSMUSG00000029283.17 ENSMUSG00000029283 ENSMUST00000123546 Cdc7 protein_coding Interval_14237 chr10 29346976 29347196 + 0 NA TTS (ENSMUSG00000038876.12) protein_coding-TTS (ENSMUSG00000038876.12) -2499 ENSMUSG00000096841.1 ENSMUSG00000096841 ENSMUST00000178368 Gm25596 snRNA Interval_100175 chr2 167468290 167469075 + 0 NA TTS (ENSMUSG00000039463.14) protein_coding-TTS (ENSMUSG00000039463.14) 17627 ENSMUSG00000039463.14 ENSMUSG00000039463 ENSMUST00000148454 Slc9a8 protein_coding Interval_40070 chr12 100989619 100989872 + 0 NA intron (ENSMUSG00000113634.1, intron 2 of 4) protein_coding-intron (ENSMUSG00000021182.16, intron 3 of 29) -17242 ENSMUSG00000113634.1 ENSMUSG00000113634 ENSMUST00000223241 Gm36756 antisense Interval_56312 chr14 117068354 117068574 + 0 NA intron (ENSMUSG00000058571.11, intron 1 of 9) protein_coding-intron (ENSMUSG00000058571.11, intron 1 of 8) 142933 ENSMUSG00000058571.11 ENSMUSG00000058571 ENSMUST00000078849 Gpc6 protein_coding Interval_115173 chr4 93328595 93329903 + 0 NA Intergenic Intergenic 6262 ENSMUSG00000054000.5 ENSMUSG00000054000 ENSMUST00000066774 Tusc1 protein_coding Interval_7447 chr1 131420509 131420757 + 0 NA intron (ENSMUSG00000026425.15, intron 3 of 4) protein_coding-intron (ENSMUSG00000026425.15, intron 3 of 22) -11420 ENSMUSG00000101778.1 ENSMUSG00000101778 ENSMUST00000191427 Gm29488 sense_intronic Interval_129976 chr5 123426634 123427152 + 0 NA intron (ENSMUSG00000038342.15, intron 1 of 8) protein_coding-intron (ENSMUSG00000038342.15, intron 1 of 16) 20406 ENSMUSG00000106636.1 ENSMUSG00000106636 ENSMUST00000200134 Gm43813 processed_transcript Interval_137823 chr6 82754426 82755957 + 0 NA intron (ENSMUSG00000000628.10, intron 2 of 17) protein_coding-intron (ENSMUSG00000000628.10, intron 2 of 17) -9091 ENSMUSG00000090293.1 ENSMUSG00000090293 ENSMUST00000168990 Gm17034 antisense Interval_38868 chr12 83510078 83510992 + 0 NA Intergenic Intergenic 5453 ENSMUSG00000113664.1 ENSMUSG00000113664 ENSMUST00000221402 Gm47184 processed_pseudogene Interval_18395 chr10 85512609 85513705 + 0 NA intron (ENSMUSG00000020042.15, intron 1 of 16) protein_coding-intron (ENSMUSG00000020042.15, intron 1 of 9) -132046 ENSMUSG00000020042.15 ENSMUSG00000020042 ENSMUST00000145433 Btbd11 protein_coding Interval_79168 chr18 25321126 25321646 + 0 NA intron (ENSMUSG00000033632.16, intron 7 of 11) protein_coding-intron (ENSMUSG00000033632.16, intron 6 of 9) -70415 ENSMUSG00000089908.1 ENSMUSG00000089908 ENSMUST00000163015 Gm16558 processed_pseudogene Interval_160699 chr8 111685972 111687793 + 0 NA intron (ENSMUSG00000031957.6, intron 6 of 6) protein_coding-intron (ENSMUSG00000031957.6, intron 6 of 6) 2792 ENSMUSG00000099129.1 ENSMUSG00000099129 ENSMUST00000183519 Mir7076 miRNA Interval_44986 chr13 51155614 51156433 + 0 NA Intergenic Intergenic -15036 ENSMUSG00000021396.5 ENSMUSG00000021396 ENSMUST00000221339 Nxnl2 protein_coding Interval_143715 chr7 15893956 15894904 + 0 NA intron (ENSMUSG00000074365.13, intron 3 of 4) protein_coding-intron (ENSMUSG00000074365.13, intron 3 of 4) -2976 ENSMUSG00000074365.13 ENSMUSG00000074365 ENSMUST00000171280 Crxos protein_coding Interval_86043 chr19 35833600 35834237 + 0 NA Intergenic Intergenic -67791 ENSMUSG00000118212.1 ENSMUSG00000118212 ENSMUST00000235233 Gm41836 lincRNA Interval_57062 chr15 5234394 5236762 + 0 NA intron (ENSMUSG00000039942.15, intron 2 of 2) protein_coding-intron (ENSMUSG00000039942.15, intron 2 of 2) 7132 ENSMUSG00000039942.15 ENSMUSG00000039942 ENSMUST00000047379 Ptger4 protein_coding Interval_106299 chr3 95239112 95241592 + 0 NA TTS (ENSMUSG00000028115.16) protein_coding-TTS (ENSMUSG00000028115.16) 1246 ENSMUSG00000068860.5 ENSMUSG00000068860 ENSMUST00000107197 Gm128 protein_coding Interval_171258 chr9 115708270 115708538 + 0 NA Intergenic Intergenic 27661 ENSMUSG00000110905.1 ENSMUSG00000110905 ENSMUST00000215982 Gm48007 lincRNA Interval_27356 chr11 66922384 66923506 + 0 NA intron (ENSMUSG00000048070.4, intron 1 of 1) protein_coding-intron (ENSMUSG00000048070.4, intron 1 of 1) 10964 ENSMUSG00000048070.4 ENSMUSG00000048070 ENSMUST00000123434 Pirt protein_coding Interval_22234 chr11 7429061 7429347 + 0 NA Intergenic Intergenic -138830 ENSMUSG00000087637.1 ENSMUSG00000087637 ENSMUST00000149481 Gm11986 lincRNA Interval_17268 chr10 75443893 75444518 + 0 NA intron (ENSMUSG00000033416.15, intron 2 of 3) protein_coding-intron (ENSMUSG00000033416.15, intron 5 of 8) 1585 ENSMUSG00000084622.1 ENSMUSG00000084622 ENSMUST00000122673 Gm25545 misc_RNA Interval_24615 chr11 35283354 35283593 + 0 NA intron (ENSMUSG00000056427.10, intron 2 of 3) protein_coding-intron (ENSMUSG00000056427.10, intron 4 of 35) 40197 ENSMUSG00000082309.3 ENSMUSG00000082309 ENSMUST00000120348 Gm12123 processed_pseudogene Interval_77093 chr17 86471064 86472054 + 0 NA intron (ENSMUSG00000045038.14, intron 2 of 14) protein_coding-intron (ENSMUSG00000045038.14, intron 3 of 15) -19003 ENSMUSG00000045038.14 ENSMUSG00000045038 ENSMUST00000136986 Prkce protein_coding Interval_102531 chr3 27531937 27532678 + 0 NA intron (ENSMUSG00000039286.12, intron 3 of 4) protein_coding-intron (ENSMUSG00000039286.12, intron 6 of 25) -14334 ENSMUSG00000106625.1 ENSMUSG00000106625 ENSMUST00000198723 Gm43344 TEC Interval_19352 chr10 97479437 97479677 + 0 NA promoter-TSS (ENSMUSG00000019929.16) protein_coding-promoter-TSS (ENSMUSG00000019929.16) -3296 ENSMUSG00000019929.16 ENSMUSG00000019929 ENSMUST00000219539 Dcn protein_coding Interval_55831 chr14 101199058 101199923 + 0 NA intron (ENSMUSG00000042888.10, intron 2 of 2) protein_coding-intron (ENSMUSG00000042888.10, intron 2 of 2) 840 ENSMUSG00000042888.10 ENSMUSG00000042888 ENSMUST00000187304 Prr30 protein_coding Interval_72108 chr17 28079178 28081976 + 0 NA promoter-TSS (ENSMUSG00000062859.15) protein_coding-promoter-TSS (ENSMUSG00000062859.15) -282 ENSMUSG00000117120.1 ENSMUSG00000117120 ENSMUST00000141806 Gm50238 processed_transcript Interval_78414 chr18 12660611 12661065 + 0 NA intron (ENSMUSG00000024424.15, intron 1 of 13) protein_coding-intron (ENSMUSG00000024424.15, intron 1 of 13) -12419 ENSMUSG00000117573.1 ENSMUSG00000117573 ENSMUST00000234607 Gm41668 antisense Interval_157419 chr8 70240816 70241681 + 0 NA intron (ENSMUSG00000036054.15, intron 2 of 9) protein_coding-intron (ENSMUSG00000036054.15, intron 2 of 10) 7022 ENSMUSG00000036054.15 ENSMUSG00000036054 ENSMUST00000129402 Sugp2 protein_coding Interval_47051 chr13 74807503 74809005 + 0 NA promoter-TSS (ENSMUSG00000021585.10) protein_coding-promoter-TSS (ENSMUSG00000021585.10) 267 ENSMUSG00000021585.10 ENSMUSG00000021585 ENSMUST00000223123 Cast protein_coding Interval_102600 chr3 28192906 28193297 + 0 NA intron (ENSMUSG00000109716.1, intron 2 of 4) lincRNA-intron (ENSMUSG00000109716.1, intron 2 of 4) 16548 ENSMUSG00000109716.1 ENSMUSG00000109716 ENSMUST00000209618 Gm42196 lincRNA Interval_94233 chr2 85838405 85838625 + 0 NA Intergenic Intergenic 6968 ENSMUSG00000075208.6 ENSMUSG00000075208 ENSMUST00000102634 Olfr1019 protein_coding Interval_114123 chr4 63686176 63686457 + 0 NA Intergenic Intergenic -22937 ENSMUSG00000099294.1 ENSMUSG00000099294 ENSMUST00000184810 Gm11214 protein_coding Interval_38788 chr12 82349289 82349769 + 0 NA intron (ENSMUSG00000042700.16, intron 3 of 21) protein_coding-intron (ENSMUSG00000042700.16, intron 2 of 20) 147008 ENSMUSG00000094374.2 ENSMUSG00000094374 ENSMUST00000179295 Gm5435 processed_pseudogene Interval_16092 chr10 60691344 60691634 + 0 NA intron (ENSMUSG00000012819.15, intron 1 of 7) protein_coding-intron (ENSMUSG00000012819.15, intron 1 of 70) 61294 ENSMUSG00000020100.15 ENSMUSG00000020100 ENSMUST00000144989 Slc29a3 protein_coding Interval_147773 chr7 73485052 73485405 + 0 NA intron (ENSMUSG00000078671.11, intron 16 of 38) protein_coding-intron (ENSMUSG00000078671.11, intron 16 of 38) 14020 ENSMUSG00000108319.1 ENSMUSG00000108319 ENSMUST00000205458 Gm44552 TEC Interval_33961 chr11 119684792 119685620 + 0 NA intron (ENSMUSG00000025583.15, intron 3 of 32) protein_coding-intron (ENSMUSG00000025583.15, intron 3 of 33) -38576 ENSMUSG00000083870.1 ENSMUSG00000083870 ENSMUST00000121392 Gm11761 processed_pseudogene Interval_169747 chr9 100924086 100924485 + 0 NA intron (ENSMUSG00000037286.15, intron 3 of 7) protein_coding-intron (ENSMUSG00000037286.15, intron 22 of 32) -31484 ENSMUSG00000037286.15 ENSMUSG00000037286 ENSMUST00000191345 Stag1 protein_coding Interval_6427 chr1 107960756 107961337 + 0 NA intron (ENSMUSG00000100457.6, intron 2 of 3) lincRNA-intron (ENSMUSG00000100457.6, intron 2 of 3) 2261 ENSMUSG00000099484.1 ENSMUSG00000099484 ENSMUST00000186072 Gm28282 processed_pseudogene Interval_128875 chr5 115809013 115809201 + 0 NA Intergenic Intergenic -6948 ENSMUSG00000083833.4 ENSMUSG00000083833 ENSMUST00000118829 Gm13841 processed_pseudogene Interval_97700 chr2 142923193 142923458 + 0 NA Intergenic Intergenic 20360 ENSMUSG00000086504.1 ENSMUSG00000086504 ENSMUST00000124774 Kif16bos antisense Interval_111842 chr4 31835838 31836427 + 0 NA Intergenic Intergenic -149535 ENSMUSG00000028284.13 ENSMUSG00000028284 ENSMUST00000131310 Map3k7 protein_coding Interval_140809 chr6 121520539 121520824 + 0 NA Intergenic Intergenic -17515 ENSMUSG00000107923.1 ENSMUSG00000107923 ENSMUST00000205071 Gm43922 processed_pseudogene Interval_2335 chr1 38152772 38153184 + 0 NA intron (ENSMUSG00000102716.1, intron 3 of 5) lincRNA-intron (ENSMUSG00000102716.1, intron 3 of 5) 20895 ENSMUSG00000102716.1 ENSMUSG00000102716 ENSMUST00000194892 Gm5099 lincRNA Interval_170817 chr9 110951358 110954979 + 0 NA promoter-TSS (ENSMUSG00000032495.8) protein_coding-promoter-TSS (ENSMUSG00000032495.8) -631 ENSMUSG00000032495.8 ENSMUSG00000032495 ENSMUST00000196598 Lrrc2 protein_coding Interval_132726 chr5 147416852 147417138 + 0 NA Intergenic Intergenic -1606 ENSMUSG00000106820.1 ENSMUSG00000106820 ENSMUST00000201128 D5Ertd605e lincRNA Interval_154423 chr8 16168545 16168876 + 0 NA TTS (ENSMUSG00000093142.1) miRNA-TTS (ENSMUSG00000093142.1) 128 ENSMUSG00000093142.1 ENSMUSG00000093142 ENSMUST00000175401 Mir3106 miRNA Interval_167673 chr9 71774987 71775195 + 0 NA Intergenic Intergenic 52446 ENSMUSG00000099220.1 ENSMUSG00000099220 ENSMUST00000183453 Gm27220 processed_pseudogene Interval_11187 chr1 179975255 179975913 + 0 NA promoter-TSS (ENSMUSG00000026490.18) protein_coding-promoter-TSS (ENSMUSG00000026490.18) 14474 ENSMUSG00000026490.18 ENSMUSG00000026490 ENSMUST00000129754 Cdc42bpa protein_coding Interval_66427 chr16 33792702 33793346 + 0 NA intron (ENSMUSG00000090214.8, intron 2 of 2) antisense-intron (ENSMUSG00000090214.8, intron 2 of 2) -1013 ENSMUSG00000022824.12 ENSMUSG00000022824 ENSMUST00000023520 Muc13 protein_coding Interval_164810 chr9 42099093 42101074 + 0 NA intron (ENSMUSG00000049313.8, intron 2 of 47) protein_coding-intron (ENSMUSG00000049313.8, intron 2 of 47) -42278 ENSMUSG00000111167.1 ENSMUSG00000111167 ENSMUST00000217090 Gm39321 lincRNA Interval_43747 chr13 35974973 35975215 + 0 NA Intergenic Intergenic -10086 ENSMUSG00000114647.1 ENSMUSG00000114647 ENSMUST00000223592 Gm30127 antisense Interval_19282 chr10 96080130 96081424 + 0 NA intron (ENSMUSG00000117008.1, intron 4 of 13) unitary_pseudogene-intron (ENSMUSG00000117008.1, intron 4 of 13) 15228 ENSMUSG00000117008.1 ENSMUSG00000117008 ENSMUST00000233655 Gm49817 unitary_pseudogene Interval_60455 chr15 73851668 73852504 + 0 NA Intergenic Intergenic 17525 ENSMUSG00000086361.1 ENSMUSG00000086361 ENSMUST00000154520 Gm6569 protein_coding Interval_83762 chr19 4445626 4446464 + 0 NA promoter-TSS (ENSMUSG00000087132.8) processed_transcript-promoter-TSS (ENSMUSG00000087132.8) -6645 ENSMUSG00000041845.11 ENSMUSG00000041845 ENSMUST00000151420 Rhod protein_coding Interval_158506 chr8 84137242 84137509 + 0 NA promoter-TSS (ENSMUSG00000036686.16) protein_coding-promoter-TSS (ENSMUSG00000036686.16) -587 ENSMUSG00000036686.16 ENSMUSG00000036686 ENSMUST00000126364 Cc2d1a protein_coding Interval_112940 chr4 46222019 46222563 + 0 NA Intergenic Intergenic 21599 ENSMUSG00000082194.3 ENSMUSG00000082194 ENSMUST00000121512 Gm12444 processed_pseudogene Interval_150163 chr7 107500383 107502076 + 0 NA intron (ENSMUSG00000062542.11, intron 3 of 6) protein_coding-intron (ENSMUSG00000062542.11, intron 3 of 6) -2833 ENSMUSG00000062542.11 ENSMUSG00000062542 ENSMUST00000127444 Syt9 protein_coding Interval_50908 chr14 20707182 20708624 + 0 NA promoter-TSS (ENSMUSG00000021819.11) protein_coding-promoter-TSS (ENSMUSG00000021819.11) 4845 ENSMUSG00000063787.4 ENSMUSG00000063787 ENSMUST00000224633 Chchd1 protein_coding Interval_170545 chr9 108613471 108614069 + 0 NA TTS (ENSMUSG00000064145.12) protein_coding-TTS (ENSMUSG00000064145.12) -16194 ENSMUSG00000006675.10 ENSMUSG00000006675 ENSMUST00000193621 P4htm protein_coding Interval_155350 chr8 32077252 32077467 + 0 NA intron (ENSMUSG00000062991.9, intron 1 of 12) protein_coding-intron (ENSMUSG00000062991.9, intron 1 of 8) -68250 ENSMUSG00000062991.9 ENSMUSG00000062991 ENSMUST00000208206 Nrg1 protein_coding Interval_161312 chr8 119676477 119676827 + 0 NA intron (ENSMUSG00000023336.6, intron 1 of 4) protein_coding-intron (ENSMUSG00000023336.6, intron 1 of 6) -5771 ENSMUSG00000110453.1 ENSMUSG00000110453 ENSMUST00000212465 Gm32352 antisense Interval_88688 chr2 9749612 9750996 + 0 NA Intergenic Intergenic -118963 ENSMUSG00000104276.1 ENSMUSG00000104276 ENSMUST00000191950 Gm37866 TEC Interval_7865 chr1 134243864 134245424 + 0 NA Intergenic Intergenic -9280 ENSMUSG00000042429.8 ENSMUSG00000042429 ENSMUST00000187631 Adora1 protein_coding Interval_66310 chr16 33055685 33057084 + 0 NA promoter-TSS (ENSMUSG00000035578.16) protein_coding-promoter-TSS (ENSMUSG00000035578.16) -115 ENSMUSG00000060636.14 ENSMUSG00000060636 ENSMUST00000115075 Rpl35a protein_coding Interval_150806 chr7 114827845 114828067 + 0 NA intron (ENSMUSG00000048782.15, intron 7 of 12) protein_coding-intron (ENSMUSG00000048782.15, intron 7 of 12) 4558 ENSMUSG00000077644.1 ENSMUSG00000077644 ENSMUST00000104456 Gm24982 snoRNA Interval_88077 chr19 58872000 58873226 + 0 NA intron (ENSMUSG00000025092.7, intron 2 of 6) protein_coding-intron (ENSMUSG00000025092.7, intron 2 of 6) 39146 ENSMUSG00000092813.1 ENSMUSG00000092813 ENSMUST00000175072 Mir3086 miRNA Interval_154716 chr8 22807510 22808608 + 0 NA promoter-TSS (ENSMUSG00000054822.5) lincRNA-promoter-TSS (ENSMUSG00000054822.5) 2293 ENSMUSG00000054822.5 ENSMUSG00000054822 ENSMUST00000068068 1700041G16Rik lincRNA Interval_89563 chr2 22802071 22802317 + 0 NA intron (ENSMUSG00000026786.14, intron 1 of 8) protein_coding-intron (ENSMUSG00000026786.14, intron 1 of 13) 27804 ENSMUSG00000026786.14 ENSMUSG00000026786 ENSMUST00000132993 Apbb1ip protein_coding Interval_134576 chr6 29707981 29708229 + 0 NA promoter-TSS (ENSMUSG00000001763.14) protein_coding-promoter-TSS (ENSMUSG00000001763.14) 77 ENSMUSG00000001763.14 ENSMUSG00000001763 ENSMUST00000137925 Tspan33 protein_coding Interval_165560 chr9 49493984 49494767 + 0 NA Intergenic Intergenic -8160 ENSMUSG00000040219.4 ENSMUSG00000040219 ENSMUST00000146666 Ttc12 protein_coding Interval_5602 chr1 90123872 90125179 + 0 NA intron (ENSMUSG00000026301.16, intron 6 of 18) protein_coding-intron (ENSMUSG00000026301.16, intron 6 of 18) -29103 ENSMUSG00000100850.1 ENSMUSG00000100850 ENSMUST00000190254 4930434B07Rik lincRNA Interval_165366 chr9 46663397 46663900 + 0 NA Intergenic Intergenic -7893 ENSMUSG00000111800.1 ENSMUSG00000111800 ENSMUST00000216189 Gm31557 lincRNA Interval_77651 chr17 93563602 93564430 + 0 NA Intergenic Intergenic 116649 ENSMUSG00000117514.1 ENSMUSG00000117514 ENSMUST00000234106 Gm50002 processed_pseudogene Interval_13446 chr10 18333427 18334863 + 0 NA intron (ENSMUSG00000039835.16, intron 1 of 6) protein_coding-intron (ENSMUSG00000039835.16, intron 1 of 6) 3096 ENSMUSG00000111313.1 ENSMUSG00000111313 ENSMUST00000213578 Gm18942 processed_pseudogene Interval_10370 chr1 170073602 170074745 + 0 NA intron (ENSMUSG00000026674.9, intron 2 of 3) protein_coding-intron (ENSMUSG00000026674.9, intron 2 of 17) 36589 ENSMUSG00000026674.9 ENSMUSG00000026674 ENSMUST00000194619 Ddr2 protein_coding Interval_18132 chr10 82866170 82867092 + 0 NA promoter-TSS (ENSMUSG00000109864.1) protein_coding-promoter-TSS (ENSMUSG00000109864.1) 5 ENSMUSG00000109864.1 ENSMUSG00000109864 ENSMUST00000211623 Eid3 protein_coding Interval_168549 chr9 83459931 83461111 + 0 NA Intergenic Intergenic 12962 ENSMUSG00000103044.1 ENSMUSG00000103044 ENSMUST00000193663 Gm37307 TEC Interval_28739 chr11 78006397 78007471 + 0 NA intron (ENSMUSG00000037791.15, intron 3 of 10) protein_coding-intron (ENSMUSG00000037791.15, intron 3 of 14) -16695 ENSMUSG00000037791.15 ENSMUSG00000037791 ENSMUST00000125079 Phf12 protein_coding Interval_172367 chrX 13881835 13882317 + 0 NA Intergenic Intergenic 47435 ENSMUSG00000082736.1 ENSMUSG00000082736 ENSMUST00000117975 Gm5381 processed_pseudogene Interval_21389 chr10 128314201 128314392 + 0 NA exon (ENSMUSG00000005682.9, exon 13 of 26) protein_coding-exon (ENSMUSG00000005682.9, exon 13 of 26) -8218 ENSMUSG00000025381.3 ENSMUSG00000025381 ENSMUST00000219199 Cnpy2 protein_coding Interval_23763 chr11 26016736 26017390 + 0 NA intron (ENSMUSG00000032985.15, intron 1 of 5) protein_coding-intron (ENSMUSG00000032985.15, intron 1 of 6) -185177 ENSMUSG00000099015.1 ENSMUSG00000099015 ENSMUST00000185114 Mir6372 miRNA Interval_56618 chr14 120885386 120886601 + 0 NA Intergenic Intergenic -29854 ENSMUSG00000030662.10 ENSMUSG00000030662 ENSMUST00000228277 Ipo5 protein_coding Interval_55590 chr14 94152830 94153028 + 0 NA Intergenic Intergenic 104236 ENSMUSG00000115613.1 ENSMUSG00000115613 ENSMUST00000228013 Gm48982 processed_pseudogene Interval_106598 chr3 97593841 97594568 + 0 NA intron (ENSMUSG00000028089.5, intron 6 of 15) protein_coding-intron (ENSMUSG00000028089.5, intron 6 of 22) -15728 ENSMUSG00000105004.1 ENSMUSG00000105004 ENSMUST00000198613 Gm43075 TEC Interval_140962 chr6 123191242 123191559 + 0 NA intron (ENSMUSG00000067767.5, intron 3 of 5) protein_coding-intron (ENSMUSG00000067767.5, intron 3 of 5) 4313 ENSMUSG00000089183.1 ENSMUSG00000089183 ENSMUST00000158558 Gm22946 snRNA Interval_91582 chr2 43918746 43918946 + 0 NA intron (ENSMUSG00000049744.15, intron 6 of 14) protein_coding-intron (ENSMUSG00000049744.15, intron 6 of 13) 146478 ENSMUSG00000085089.1 ENSMUSG00000085089 ENSMUST00000139948 Arhgap15os antisense Interval_96807 chr2 128439824 128440029 + 0 NA intron (ENSMUSG00000114963.1, intron 3 of 7) lincRNA-intron (ENSMUSG00000074813.14, intron 2 of 2) 6203 ENSMUSG00000114963.1 ENSMUSG00000114963 ENSMUST00000224297 Gm29010 lincRNA Interval_82986 chr18 80178124 80179646 + 0 NA Intergenic Intergenic -7354 ENSMUSG00000118061.1 ENSMUSG00000118061 ENSMUST00000236423 Rbfaos lincRNA Interval_74872 chr17 56996758 56997832 + 0 NA promoter-TSS (ENSMUSG00000002661.14) protein_coding-promoter-TSS (ENSMUSG00000002661.14) -1185 ENSMUSG00000002661.14 ENSMUSG00000002661 ENSMUST00000149632 Alkbh7 protein_coding Interval_67357 chr16 47753816 47754067 + 0 NA Intergenic Intergenic -4499 ENSMUSG00000088083.1 ENSMUSG00000088083 ENSMUST00000157458 Gm25339 misc_RNA Interval_113562 chr4 56721409 56721709 + 0 NA Intergenic Intergenic -18511 ENSMUSG00000096930.1 ENSMUSG00000096930 ENSMUST00000181745 Gm26657 protein_coding Interval_141721 chr6 134032461 134032808 + 0 NA Intergenic Intergenic -40720 ENSMUSG00000108214.1 ENSMUSG00000108214 ENSMUST00000204995 Gm43982 TEC Interval_114403 chr4 75266396 75268623 + 0 NA Intergenic Intergenic 10796 ENSMUSG00000028398.8 ENSMUSG00000028398 ENSMUST00000030103 Dmac1 protein_coding Interval_159658 chr8 96179581 96179986 + 0 NA Intergenic Intergenic -129736 ENSMUSG00000110623.1 ENSMUSG00000110623 ENSMUST00000212446 Gm32005 lincRNA Interval_34329 chr12 3414793 3415649 + 0 NA intron (ENSMUSG00000071456.6, intron 1 of 1) antisense-intron (ENSMUSG00000071456.6, intron 1 of 2) -11155 ENSMUSG00000112308.1 ENSMUSG00000112308 ENSMUST00000217965 Gm48512 antisense Interval_14356 chr10 31445197 31446276 + 0 NA promoter-TSS (ENSMUSG00000000296.8) protein_coding-promoter-TSS (ENSMUSG00000000296.8) 83 ENSMUSG00000000296.8 ENSMUSG00000000296 ENSMUST00000213639 Tpd52l1 protein_coding Interval_32476 chr11 107738503 107739414 + 0 NA intron (ENSMUSG00000020723.3, intron 1 of 2) protein_coding-intron (ENSMUSG00000020723.3, intron 2 of 3) 3121 ENSMUSG00000020723.3 ENSMUSG00000020723 ENSMUST00000134076 Cacng4 protein_coding Interval_20013 chr10 111977278 111978273 + 0 NA intron (ENSMUSG00000063334.16, intron 5 of 8) protein_coding-intron (ENSMUSG00000063334.16, intron 4 of 8) 4982 ENSMUSG00000063334.16 ENSMUSG00000063334 ENSMUST00000174653 Krr1 protein_coding Interval_142445 chr6 142359039 142359882 + 0 NA exon (ENSMUSG00000030243.16, exon 6 of 6) protein_coding-exon (ENSMUSG00000030243.16, exon 6 of 6) 13793 ENSMUSG00000041671.13 ENSMUSG00000041671 ENSMUST00000153912 Pyroxd1 protein_coding Interval_161091 chr8 117402912 117404121 + 0 NA intron (ENSMUSG00000034390.16, intron 3 of 10) protein_coding-intron (ENSMUSG00000034390.16, intron 3 of 20) -19900 ENSMUSG00000034390.16 ENSMUSG00000034390 ENSMUST00000212884 Cmip protein_coding Interval_166876 chr9 63595521 63595764 + 0 NA intron (ENSMUSG00000037801.13, intron 1 of 20) protein_coding-intron (ENSMUSG00000037801.13, intron 1 of 21) 6775 ENSMUSG00000037801.13 ENSMUSG00000037801 ENSMUST00000170960 Iqch protein_coding Interval_155092 chr8 26382145 26382963 + 0 NA Intergenic Intergenic 53159 ENSMUSG00000109996.1 ENSMUSG00000109996 ENSMUST00000209232 Gm31898 lincRNA Interval_86668 chr19 42425379 42425683 + 0 NA intron (ENSMUSG00000042401.8, intron 1 of 14) protein_coding-intron (ENSMUSG00000042401.8, intron 1 of 14) 6254 ENSMUSG00000042401.8 ENSMUSG00000042401 ENSMUST00000238182 Crtac1 protein_coding Interval_29832 chr11 87150627 87151564 + 0 NA intron (ENSMUSG00000018548.15, intron 8 of 23) protein_coding-intron (ENSMUSG00000018548.15, intron 8 of 23) -24137 ENSMUSG00000085310.7 ENSMUSG00000085310 ENSMUST00000155828 Gm11491 antisense Interval_43737 chr13 35872266 35872546 + 0 NA intron (ENSMUSG00000059288.14, intron 6 of 6) protein_coding-intron (ENSMUSG00000059288.14, intron 9 of 9) -33051 ENSMUSG00000114270.1 ENSMUSG00000114270 ENSMUST00000225277 Gm48746 lincRNA Interval_38923 chr12 83841377 83843024 + 0 NA TTS (ENSMUSG00000021224.15) protein_coding-TTS (ENSMUSG00000021224.15) -5850 ENSMUSG00000113141.1 ENSMUSG00000113141 ENSMUST00000221017 Gm47748 processed_pseudogene Interval_71712 chr17 25623867 25624668 + 0 NA intron (ENSMUSG00000002279.19, intron 4 of 6) protein_coding-intron (ENSMUSG00000002279.19, intron 4 of 10) 44947 ENSMUSG00000002279.19 ENSMUSG00000002279 ENSMUST00000156868 Lmf1 protein_coding Interval_96271 chr2 121118945 121119402 + 0 NA Intergenic Intergenic -9381 ENSMUSG00000079103.3 ENSMUSG00000079103 ENSMUST00000238428 Tgm7 protein_coding Interval_41781 chr12 119058025 119058274 + 0 NA Intergenic Intergenic 9281 ENSMUSG00000114030.1 ENSMUSG00000114030 ENSMUST00000221798 Gm18921 processed_pseudogene Interval_47816 chr13 93454161 93454485 + 0 NA intron (ENSMUSG00000021690.10, intron 4 of 10) protein_coding-intron (ENSMUSG00000021690.10, intron 4 of 10) 5835 ENSMUSG00000113237.1 ENSMUSG00000113237 ENSMUST00000223297 Gm6109 processed_pseudogene Interval_131366 chr5 136743169 136744466 + 0 NA intron (ENSMUSG00000004415.15, intron 1 of 1) protein_coding-intron (ENSMUSG00000004415.15, intron 12 of 12) 46038 ENSMUSG00000005474.9 ENSMUSG00000005474 ENSMUST00000197849 Myl10 protein_coding Interval_4014 chr1 66467830 66468882 + 0 NA promoter-TSS (ENSMUSG00000055567.18) protein_coding-promoter-TSS (ENSMUSG00000055567.18) -91 ENSMUSG00000055567.18 ENSMUSG00000055567 ENSMUST00000152844 Unc80 protein_coding Interval_171588 chr9 119410228 119411246 + 0 NA intron (ENSMUSG00000061393.14, intron 1 of 10) protein_coding-intron (ENSMUSG00000061393.14, intron 1 of 9) -1721 ENSMUSG00000111204.1 ENSMUSG00000111204 ENSMUST00000217028 Gm47320 antisense Interval_87868 chr19 56700349 56700567 + 0 NA Intergenic Intergenic -23405 ENSMUSG00000035283.5 ENSMUSG00000035283 ENSMUST00000236875 Adrb1 protein_coding Interval_69133 chr16 90855322 90855783 + 0 NA intron (ENSMUSG00000039903.18, intron 1 of 4) protein_coding-intron (ENSMUSG00000039903.18, intron 1 of 7) -4589 ENSMUSG00000116543.1 ENSMUSG00000116543 ENSMUST00000232254 Gm36363 antisense Interval_15920 chr10 59292530 59292981 + 0 NA Intergenic Intergenic -30613 ENSMUSG00000019916.14 ENSMUSG00000019916 ENSMUST00000105466 P4ha1 protein_coding Interval_142569 chr6 143373417 143374182 + 0 NA Intergenic Intergenic 91598 ENSMUSG00000077241.1 ENSMUSG00000077241 ENSMUST00000104053 Gm23272 snoRNA Interval_36273 chr12 40532512 40533166 + 0 NA intron (ENSMUSG00000035954.10, intron 1 of 5) protein_coding-intron (ENSMUSG00000035954.10, intron 1 of 52) 86756 ENSMUSG00000035954.10 ENSMUSG00000035954 ENSMUST00000220850 Dock4 protein_coding Interval_130018 chr5 123723667 123724173 + 0 NA Intergenic Intergenic -3146 ENSMUSG00000029427.11 ENSMUSG00000029427 ENSMUST00000200503 Zcchc8 protein_coding Interval_77607 chr17 92984394 92985114 + 0 NA Intergenic Intergenic 8233 ENSMUSG00000117409.1 ENSMUSG00000117409 ENSMUST00000234475 Gm49996 processed_pseudogene Interval_28637 chr11 77483098 77484143 + 0 NA intron (ENSMUSG00000037907.16, intron 1 of 15) protein_coding-intron (ENSMUSG00000037907.16, intron 1 of 14) -7184 ENSMUSG00000037907.16 ENSMUSG00000037907 ENSMUST00000127291 Ankrd13b protein_coding Interval_138131 chr6 85374085 85375337 + 0 NA promoter-TSS (ENSMUSG00000051343.11) protein_coding-promoter-TSS (ENSMUSG00000051343.11) -33074 ENSMUSG00000051343.11 ENSMUSG00000051343 ENSMUST00000204504 Rab11fip5 protein_coding Interval_41250 chr12 112155326 112155707 + 0 NA intron (ENSMUSG00000021294.7, intron 2 of 15) protein_coding-intron (ENSMUSG00000021294.7, intron 2 of 15) -23638 ENSMUSG00000021294.7 ENSMUSG00000021294 ENSMUST00000183816 Kif26a protein_coding Interval_719 chr1 10134245 10134702 + 0 NA TTS (ENSMUSG00000056763.16) protein_coding-TTS (ENSMUSG00000056763.16) 7228 ENSMUSG00000067851.11 ENSMUSG00000067851 ENSMUST00000186720 Arfgef1 protein_coding Interval_61910 chr15 85146068 85146432 + 0 NA Intergenic Intergenic 9882 ENSMUSG00000115924.1 ENSMUSG00000115924 ENSMUST00000229478 Gm19277 lincRNA Interval_62054 chr15 86124330 86124942 + 0 NA intron (ENSMUSG00000035900.18, intron 5 of 18) protein_coding-intron (ENSMUSG00000035900.18, intron 5 of 18) -24948 ENSMUSG00000088357.1 ENSMUSG00000088357 ENSMUST00000157732 Gm24011 misc_RNA Interval_56036 chr14 105019581 105020635 + 0 NA Intergenic Intergenic -23342 ENSMUSG00000115195.1 ENSMUSG00000115195 ENSMUST00000227910 Gm5671 processed_pseudogene Interval_107893 chr3 116640041 116640416 + 0 NA intron (ENSMUSG00000089911.4, intron 8 of 11) protein_coding-intron (ENSMUSG00000089911.4, intron 8 of 11) -3755 ENSMUSG00000089911.4 ENSMUSG00000089911 ENSMUST00000150402 Mfsd14a protein_coding Interval_21154 chr10 126947154 126947833 + 0 NA Intergenic Intergenic -10530 ENSMUSG00000112035.1 ENSMUSG00000112035 ENSMUST00000217769 Gm49335 lincRNA Interval_20929 chr10 122171840 122172355 + 0 NA Intergenic Intergenic 2724 ENSMUSG00000098138.1 ENSMUSG00000098138 ENSMUST00000182346 Gm9081 processed_pseudogene Interval_95815 chr2 116876976 116877421 + 0 NA promoter-TSS (ENSMUSG00000086462.1) antisense-promoter-TSS (ENSMUSG00000086462.1) -30 ENSMUSG00000086462.1 ENSMUSG00000086462 ENSMUST00000151391 Gm13990 antisense Interval_73459 chr17 37482017 37482210 + 0 NA intron (ENSMUSG00000016283.13, intron 3 of 4) protein_coding-intron (ENSMUSG00000016283.13, intron 3 of 3) 1439 ENSMUSG00000016283.13 ENSMUSG00000016283 ENSMUST00000171139 H2-M2 protein_coding Interval_152442 chr7 133040797 133042497 + 0 NA intron (ENSMUSG00000030970.16, intron 2 of 4) protein_coding-intron (ENSMUSG00000030970.16, intron 2 of 10) -58095 ENSMUSG00000085663.1 ENSMUSG00000085663 ENSMUST00000131085 Gm15718 antisense Interval_120798 chr4 150708297 150708730 + 0 NA Intergenic Intergenic -29721 ENSMUSG00000085869.1 ENSMUSG00000085869 ENSMUST00000149065 Gm16079 lincRNA Interval_133037 chr5 149439476 149440812 + 0 NA intron (ENSMUSG00000029660.10, intron 1 of 5) protein_coding-intron (ENSMUSG00000029660.10, intron 1 of 6) 438 ENSMUSG00000029660.10 ENSMUSG00000029660 ENSMUST00000201610 Tex26 protein_coding Interval_151791 chr7 126692605 126693476 + 0 NA intron (ENSMUSG00000059772.12, intron 1 of 4) protein_coding-intron (ENSMUSG00000059772.12, intron 1 of 4) 2705 ENSMUSG00000059772.12 ENSMUSG00000059772 ENSMUST00000155012 Slx1b protein_coding Interval_116589 chr4 115917813 115918729 + 0 NA exon (ENSMUSG00000028707.15, exon 4 of 4) protein_coding-exon (ENSMUSG00000028707.15, exon 4 of 4) 21655 ENSMUSG00000028707.15 ENSMUSG00000028707 ENSMUST00000084338 Dmbx1 protein_coding Interval_48134 chr13 96527899 96529200 + 0 NA intron (ENSMUSG00000021668.15, intron 1 of 2) protein_coding-intron (ENSMUSG00000021668.15, intron 1 of 14) 13791 ENSMUSG00000021668.15 ENSMUSG00000021668 ENSMUST00000222100 Polk protein_coding Interval_75704 chr17 70765314 70766428 + 0 NA TTS (ENSMUSG00000117231.1) processed_transcript-TTS (ENSMUSG00000117231.1) -10289 ENSMUSG00000097282.1 ENSMUSG00000097282 ENSMUST00000181546 5031415H12Rik antisense Interval_36891 chr12 54999136 54999464 + 0 NA promoter-TSS (ENSMUSG00000035021.13) protein_coding-promoter-TSS (ENSMUSG00000035021.13) 2228 ENSMUSG00000088922.1 ENSMUSG00000088922 ENSMUST00000158297 Gm24296 snRNA Interval_155173 chr8 27201978 27202793 + 0 NA TTS (ENSMUSG00000039720.7) protein_coding-TTS (ENSMUSG00000039720.7) 21443 ENSMUSG00000039720.7 ENSMUSG00000039720 ENSMUST00000209299 Got1l1 protein_coding Interval_102274 chr3 20279741 20279948 + 0 NA Intergenic Intergenic -13401 ENSMUSG00000011463.5 ENSMUSG00000011463 ENSMUST00000137855 Cpb1 protein_coding Interval_45351 chr13 54613277 54613548 + 0 NA Intergenic Intergenic -2120 ENSMUSG00000047547.14 ENSMUSG00000047547 ENSMUST00000146301 Cltb protein_coding Interval_148583 chr7 82822115 82822831 + 0 NA Intergenic Intergenic -29126 ENSMUSG00000030636.15 ENSMUSG00000030636 ENSMUST00000032872 1700010L04Rik lincRNA Interval_138239 chr6 86535697 86536520 + 0 NA intron (ENSMUSG00000097048.7, intron 3 of 3) antisense-intron (ENSMUSG00000097048.7, intron 2 of 3) 8634 ENSMUSG00000097048.7 ENSMUSG00000097048 ENSMUST00000204663 1600020E01Rik antisense Interval_160192 chr8 107047882 107049412 + 0 NA promoter-TSS (ENSMUSG00000078931.4) protein_coding-promoter-TSS (ENSMUSG00000078931.4) -1461 ENSMUSG00000078931.4 ENSMUSG00000078931 ENSMUST00000055316 Pdf protein_coding Interval_27624 chr11 69097038 69097644 + 0 NA intron (ENSMUSG00000020893.17, intron 1 of 17) protein_coding-intron (ENSMUSG00000020893.17, intron 1 of 17) -2817 ENSMUSG00000020893.17 ENSMUSG00000020893 ENSMUST00000102605 Per1 protein_coding Interval_38297 chr12 76980708 76981660 + 0 NA intron (ENSMUSG00000112857.1, intron 1 of 3) lincRNA-intron (ENSMUSG00000112857.1, intron 1 of 3) 8724 ENSMUSG00000112857.1 ENSMUSG00000112857 ENSMUST00000219581 Gm35041 lincRNA Interval_128273 chr5 112219585 112220093 + 0 NA TTS (ENSMUSG00000097986.2) lincRNA-TTS (ENSMUSG00000097986.2) -2372 ENSMUSG00000098599.1 ENSMUSG00000098599 ENSMUST00000183644 Gm27627 misc_RNA Interval_41960 chr13 5614142 5614937 + 0 NA intron (ENSMUSG00000114053.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000114053.1, intron 1 of 1) -43411 ENSMUSG00000114053.1 ENSMUSG00000114053 ENSMUST00000223254 Gm35330 lincRNA Interval_80653 chr18 45391223 45391926 + 0 NA intron (ENSMUSG00000054477.16, intron 1 of 10) protein_coding-intron (ENSMUSG00000054477.16, intron 1 of 10) 27579 ENSMUSG00000117844.1 ENSMUSG00000117844 ENSMUST00000235439 Gm18652 processed_pseudogene Interval_33977 chr11 119793415 119793680 + 0 NA intron (ENSMUSG00000025583.15, intron 7 of 32) protein_coding-intron (ENSMUSG00000025583.15, intron 7 of 33) 40818 ENSMUSG00000085081.1 ENSMUSG00000085081 ENSMUST00000127450 Rptoros antisense Interval_62388 chr15 91602372 91602906 + 0 NA intron (ENSMUSG00000086160.1, intron 2 of 2) lincRNA-intron (ENSMUSG00000086160.1, intron 2 of 2) 5056 ENSMUSG00000086160.1 ENSMUSG00000086160 ENSMUST00000144579 4933438A12Rik lincRNA Interval_78861 chr18 21028684 21029309 + 0 NA TTS (ENSMUSG00000024317.15) protein_coding-TTS (ENSMUSG00000024317.15) 26901 ENSMUSG00000024317.15 ENSMUSG00000024317 ENSMUST00000234169 Rnf138 protein_coding Interval_139022 chr6 94251240 94251982 + 0 NA intron (ENSMUSG00000045095.16, intron 1 of 2) protein_coding-intron (ENSMUSG00000045095.16, intron 1 of 21) 72423 ENSMUSG00000107545.1 ENSMUSG00000107545 ENSMUST00000204466 Gm44307 processed_pseudogene Interval_23509 chr11 23036148 23036488 + 0 NA Intergenic Intergenic 22931 ENSMUSG00000049811.17 ENSMUSG00000049811 ENSMUST00000151877 Fam161a protein_coding Interval_128738 chr5 115008045 115012170 + 0 NA Intergenic Intergenic -29663 ENSMUSG00000107054.1 ENSMUSG00000107054 ENSMUST00000201944 C730045M19Rik TEC Interval_111807 chr4 30501424 30501683 + 0 NA intron (ENSMUSG00000087180.1, intron 3 of 3) lincRNA-intron (ENSMUSG00000087180.1, intron 3 of 3) 69441 ENSMUSG00000087180.1 ENSMUSG00000087180 ENSMUST00000152306 Gm11924 lincRNA Interval_65996 chr16 30788322 30788624 + 0 NA Intergenic Intergenic 4782 ENSMUSG00000116570.1 ENSMUSG00000116570 ENSMUST00000231445 Gm49754 lincRNA Interval_163602 chr9 22454994 22455222 + 0 NA intron (ENSMUSG00000091159.1, intron 1 of 1) protein_coding-intron (ENSMUSG00000032239.10, intron 3 of 5) 818 ENSMUSG00000091159.1 ENSMUSG00000091159 ENSMUST00000168332 Gm17545 protein_coding Interval_87179 chr19 46644663 46645513 + 0 NA TTS (ENSMUSG00000047731.17) protein_coding-TTS (ENSMUSG00000047731.17) 21038 ENSMUSG00000118040.1 ENSMUSG00000118040 ENSMUST00000238131 Gm36602 lincRNA Interval_100425 chr2 168936858 168937246 + 0 NA intron (ENSMUSG00000027551.15, intron 4 of 8) protein_coding-intron (ENSMUSG00000027551.15, intron 4 of 5) 18214 ENSMUSG00000027551.15 ENSMUSG00000027551 ENSMUST00000136242 Zfp64 protein_coding Interval_90368 chr2 30031859 30033164 + 0 NA promoter-TSS (ENSMUSG00000039715.8) protein_coding-promoter-TSS (ENSMUSG00000039715.8) 16350 ENSMUSG00000039715.8 ENSMUSG00000039715 ENSMUST00000146275 Wdr34 protein_coding Interval_57954 chr15 25728311 25729171 + 0 NA intron (ENSMUSG00000022272.17, intron 8 of 21) protein_coding-intron (ENSMUSG00000022272.17, intron 9 of 40) -39815 ENSMUSG00000022272.17 ENSMUSG00000022272 ENSMUST00000145587 Myo10 protein_coding Interval_130566 chr5 128880727 128882207 + 0 NA intron (ENSMUSG00000029420.14, intron 1 of 20) protein_coding-intron (ENSMUSG00000029420.14, intron 1 of 21) -105917 ENSMUSG00000106522.1 ENSMUSG00000106522 ENSMUST00000199333 Gm42871 sense_intronic Interval_114162 chr4 65496428 65496925 + 0 NA intron (ENSMUSG00000028373.16, intron 18 of 21) protein_coding-intron (ENSMUSG00000028373.16, intron 19 of 22) -108573 ENSMUSG00000051675.13 ENSMUSG00000051675 ENSMUST00000156922 Trim32 protein_coding Interval_98752 chr2 154702666 154703477 + 0 NA promoter-TSS (ENSMUSG00000082064.3) processed_pseudogene-promoter-TSS (ENSMUSG00000082064.3) -738 ENSMUSG00000082064.3 ENSMUSG00000082064 ENSMUST00000119057 Rpl5-ps2 processed_pseudogene Interval_75399 chr17 66353624 66354457 + 0 NA TTS (ENSMUSG00000052105.17) protein_coding-TTS (ENSMUSG00000052105.17) -34528 ENSMUSG00000117010.1 ENSMUSG00000117010 ENSMUST00000233050 Gm49933 processed_pseudogene Interval_2435 chr1 39335539 39336197 + 0 NA intron (ENSMUSG00000026077.15, intron 14 of 20) protein_coding-intron (ENSMUSG00000026077.15, intron 14 of 20) 20969 ENSMUSG00000092563.1 ENSMUSG00000092563 ENSMUST00000173076 Gm3617 processed_pseudogene Interval_78811 chr18 20749189 20750377 + 0 NA Intergenic Intergenic -3379 ENSMUSG00000056124.5 ENSMUSG00000056124 ENSMUST00000070080 B4galt6 protein_coding Interval_150489 chr7 111138165 111139188 + 0 NA Intergenic Intergenic -15992 ENSMUSG00000110424.1 ENSMUSG00000110424 ENSMUST00000210340 1700012D14Rik processed_transcript Interval_48077 chr13 95826819 95827029 + 0 NA intron (ENSMUSG00000021676.10, intron 2 of 6) protein_coding-intron (ENSMUSG00000021676.10, intron 2 of 35) 70196 ENSMUSG00000065866.1 ENSMUSG00000065866 ENSMUST00000083932 Gm24032 snRNA Interval_144321 chr7 24471183 24471846 + 0 NA intron (ENSMUSG00000046223.10, intron 3 of 3) protein_coding-intron (ENSMUSG00000046223.10, intron 3 of 6) 9014 ENSMUSG00000046223.10 ENSMUSG00000046223 ENSMUST00000206636 Plaur protein_coding Interval_3042 chr1 52527239 52528174 + 0 NA intron (ENSMUSG00000100120.1, intron 1 of 4) lincRNA-intron (ENSMUSG00000100120.1, intron 1 of 4) 4804 ENSMUSG00000100120.1 ENSMUSG00000100120 ENSMUST00000189527 Gm553 lincRNA Interval_94629 chr2 92824102 92824299 + 0 NA Intergenic Intergenic 49109 ENSMUSG00000082700.1 ENSMUSG00000082700 ENSMUST00000121350 Gm13792 processed_pseudogene Interval_98723 chr2 154507293 154508676 + 0 NA intron (ENSMUSG00000038533.15, intron 3 of 10) protein_coding-intron (ENSMUSG00000038533.15, intron 3 of 10) -39101 ENSMUSG00000038523.10 ENSMUSG00000038523 ENSMUST00000109709 1700003F12Rik protein_coding Interval_81154 chr18 55038084 55038533 + 0 NA intron (ENSMUSG00000096948.2, intron 1 of 4) antisense-intron (ENSMUSG00000096948.2, intron 1 of 4) 47349 ENSMUSG00000084521.1 ENSMUSG00000084521 ENSMUST00000122572 Gm24183 snoRNA Interval_124989 chr5 63397308 63397545 + 0 NA Intergenic Intergenic 253468 ENSMUSG00000104868.1 ENSMUSG00000104868 ENSMUST00000067917 Gm9954 TEC Interval_173380 chrX 86001195 86001430 + 0 NA Intergenic Intergenic 31857 ENSMUSG00000080266.2 ENSMUSG00000080266 ENSMUST00000116562 Gm14772 processed_pseudogene Interval_153292 chr7 143375696 143377053 + 0 NA intron (ENSMUSG00000009545.14, intron 15 of 15) protein_coding-intron (ENSMUSG00000009545.14, intron 15 of 15) -11749 ENSMUSG00000101360.2 ENSMUSG00000101360 ENSMUST00000188294 4933417O13Rik antisense Interval_66080 chr16 31464508 31465967 + 0 NA Intergenic Intergenic -4689 ENSMUSG00000116572.1 ENSMUSG00000116572 ENSMUST00000232608 Gm49695 lincRNA Interval_76847 chr17 84492123 84492998 + 0 NA Intergenic Intergenic 58683 ENSMUSG00000117391.1 ENSMUSG00000117391 ENSMUST00000234072 4930500A05Rik antisense Interval_102873 chr3 32441663 32441901 + 0 NA intron (ENSMUSG00000027665.13, intron 6 of 20) protein_coding-intron (ENSMUSG00000027665.13, intron 5 of 19) -12805 ENSMUSG00000103039.1 ENSMUSG00000103039 ENSMUST00000192994 Gm37123 TEC Interval_38663 chr12 80921099 80921745 + 0 NA Intergenic Intergenic 3027 ENSMUSG00000101912.1 ENSMUSG00000101912 ENSMUST00000190431 1700052I22Rik lincRNA Interval_100879 chr2 173080510 173081150 + 0 NA Intergenic Intergenic 38695 ENSMUSG00000070495.11 ENSMUSG00000070495 ENSMUST00000179693 Ctcfl protein_coding Interval_155117 chr8 26760679 26761390 + 0 NA promoter-TSS (ENSMUSG00000109689.1) lincRNA-promoter-TSS (ENSMUSG00000109689.1) -473 ENSMUSG00000109689.1 ENSMUSG00000109689 ENSMUST00000210983 Gm45646 lincRNA Interval_107555 chr3 108471971 108472729 + 0 NA intron (ENSMUSG00000040412.17, intron 8 of 20) protein_coding-intron (ENSMUSG00000040412.17, intron 8 of 20) -20702 ENSMUSG00000106101.1 ENSMUSG00000106101 ENSMUST00000198133 Gm43438 processed_pseudogene Interval_113600 chr4 56923814 56924425 + 0 NA promoter-TSS (ENSMUSG00000055296.14) protein_coding-promoter-TSS (ENSMUSG00000055296.14) 10477 ENSMUSG00000064595.1 ENSMUSG00000064595 ENSMUST00000082661 Gm22300 snoRNA Interval_49792 chr13 115230477 115230925 + 0 NA Intergenic Intergenic -51500 ENSMUSG00000114471.1 ENSMUSG00000114471 ENSMUST00000224035 Gm47891 processed_pseudogene Interval_131952 chr5 141034130 141035271 + 0 NA Intergenic Intergenic 4772 ENSMUSG00000104683.1 ENSMUSG00000104683 ENSMUST00000198781 Gm44385 miRNA Interval_149663 chr7 100495362 100496394 + 0 NA promoter-TSS (ENSMUSG00000033685.13) protein_coding-promoter-TSS (ENSMUSG00000033685.13) 2524 ENSMUSG00000033685.13 ENSMUSG00000033685 ENSMUST00000149808 Ucp2 protein_coding Interval_110369 chr3 157520607 157520914 + 0 NA Intergenic Intergenic 13330 ENSMUSG00000105834.1 ENSMUSG00000105834 ENSMUST00000196791 4930592C13Rik antisense Interval_83315 chr18 84111038 84111483 + 0 NA intron (ENSMUSG00000117915.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000117915.1, intron 1 of 1) 648 ENSMUSG00000117915.1 ENSMUSG00000117915 ENSMUST00000238103 Gm50309 lincRNA Interval_48133 chr13 96516337 96517021 + 0 NA exon (ENSMUSG00000021668.15, exon 3 of 15) protein_coding-exon (ENSMUSG00000021668.15, exon 3 of 15) 25661 ENSMUSG00000021668.15 ENSMUSG00000021668 ENSMUST00000222100 Polk protein_coding Interval_66561 chr16 35110016 35111770 + 0 NA Intergenic Intergenic 62278 ENSMUSG00000035376.10 ENSMUSG00000035376 ENSMUST00000231556 Hacd2 protein_coding Interval_109218 chr3 137969877 137970450 + 0 NA intron (ENSMUSG00000028159.14, intron 1 of 8) protein_coding-intron (ENSMUSG00000028159.14, intron 1 of 8) -15450 ENSMUSG00000028159.14 ENSMUSG00000028159 ENSMUST00000199541 Dapp1 protein_coding Interval_54423 chr14 69238118 69238650 + 0 NA Intergenic Intergenic -20762 ENSMUSG00000098248.1 ENSMUSG00000098248 ENSMUST00000183398 Gm27222 antisense Interval_96596 chr2 126114452 126114733 + 0 NA intron (ENSMUSG00000027209.17, intron 9 of 15) protein_coding-intron (ENSMUSG00000027209.17, intron 10 of 16) -4578 ENSMUSG00000065084.1 ENSMUSG00000065084 ENSMUST00000083150 Gm26496 snRNA Interval_32520 chr11 108083563 108084776 + 0 NA intron (ENSMUSG00000050965.14, intron 3 of 16) protein_coding-intron (ENSMUSG00000050965.14, intron 3 of 16) -71364 ENSMUSG00000050965.14 ENSMUSG00000050965 ENSMUST00000134725 Prkca protein_coding Interval_115805 chr4 104720467 104720699 + 0 NA exon (ENSMUSG00000028519.16, exon 11 of 15) protein_coding-exon (ENSMUSG00000028519.16, exon 11 of 15) -78625 ENSMUSG00000029656.13 ENSMUSG00000029656 ENSMUST00000123892 C8b protein_coding Interval_86269 chr19 38273723 38274183 + 0 NA intron (ENSMUSG00000067242.11, intron 2 of 2) protein_coding-intron (ENSMUSG00000067242.11, intron 2 of 7) 9376 ENSMUSG00000067242.11 ENSMUSG00000067242 ENSMUST00000130039 Lgi1 protein_coding Interval_110911 chr4 10062805 10063078 + 0 NA Intergenic Intergenic 103587 ENSMUSG00000082501.1 ENSMUSG00000082501 ENSMUST00000120635 Gm11835 processed_pseudogene Interval_112139 chr4 34905416 34907168 + 0 NA exon (ENSMUSG00000085824.7, exon 3 of 3) processed_transcript-exon (ENSMUSG00000085824.7, exon 3 of 3) 5189 ENSMUSG00000085824.7 ENSMUSG00000085824 ENSMUST00000125820 Platr9 processed_transcript Interval_99777 chr2 164844953 164846927 + 0 NA TTS (ENSMUSG00000017754.13) protein_coding-TTS (ENSMUSG00000017754.13) 11680 ENSMUSG00000017754.13 ENSMUSG00000017754 ENSMUST00000128110 Pltp protein_coding Interval_137129 chr6 67865984 67866296 + 0 NA Intergenic Intergenic 4987 ENSMUSG00000076508.3 ENSMUSG00000076508 ENSMUST00000103309 Igkv17-127 IG_V_gene Interval_170271 chr9 106600086 106600821 + 0 NA Intergenic Intergenic -25528 ENSMUSG00000091129.3 ENSMUSG00000091129 ENSMUST00000171091 Iqcf6 protein_coding Interval_104975 chr3 79443787 79444084 + 0 NA intron (ENSMUSG00000091685.6, intron 3 of 4) protein_coding-intron (ENSMUSG00000091685.6, intron 3 of 4) 87941 ENSMUSG00000061175.12 ENSMUSG00000061175 ENSMUST00000139171 Fnip2 protein_coding Interval_60987 chr15 78531701 78532500 + 0 NA promoter-TSS (ENSMUSG00000022440.9) protein_coding-promoter-TSS (ENSMUSG00000022440.9) -684 ENSMUSG00000022440.9 ENSMUSG00000022440 ENSMUST00000230943 C1qtnf6 protein_coding Interval_100334 chr2 168451137 168452928 + 0 NA Intergenic Intergenic -33458 ENSMUSG00000082239.1 ENSMUSG00000082239 ENSMUST00000119539 Gm14234 processed_pseudogene Interval_70204 chr17 6192372 6192950 + 0 NA intron (ENSMUSG00000034377.10, intron 3 of 13) protein_coding-intron (ENSMUSG00000034377.10, intron 3 of 13) 45242 ENSMUSG00000077789.1 ENSMUSG00000077789 ENSMUST00000104601 n-R5s26 rRNA Interval_393 chr1 4855171 4855991 + 0 NA intron (ENSMUSG00000104217.1, intron 7 of 9) protein_coding-intron (ENSMUSG00000104217.1, intron 7 of 9) -2457 ENSMUSG00000033813.15 ENSMUSG00000033813 ENSMUST00000165720 Tcea1 protein_coding Interval_168118 chr9 77201001 77201413 + 0 NA intron (ENSMUSG00000032355.16, intron 2 of 6) protein_coding-intron (ENSMUSG00000032355.16, intron 2 of 7) 94032 ENSMUSG00000098668.1 ENSMUSG00000098668 ENSMUST00000184263 Gm27210 processed_pseudogene Interval_18570 chr10 87938511 87938801 + 0 NA Intergenic Intergenic -28191 ENSMUSG00000112222.1 ENSMUSG00000112222 ENSMUST00000219550 Tyms-ps processed_pseudogene Interval_92117 chr2 53402601 53403123 + 0 NA Intergenic Intergenic -4375 ENSMUSG00000082472.1 ENSMUSG00000082472 ENSMUST00000118477 Gm13501 processed_pseudogene Interval_67702 chr16 56071067 56071897 + 0 NA TTS (ENSMUSG00000076360.1) miRNA-TTS (ENSMUSG00000076360.1) 919 ENSMUSG00000076360.1 ENSMUSG00000076360 ENSMUST00000102405 Gm24047 miRNA Interval_164565 chr9 38832597 38833779 + 0 NA Intergenic Intergenic 5573 ENSMUSG00000044798.7 ENSMUSG00000044798 ENSMUST00000219798 Olfr923 protein_coding Interval_286 KZ289085.1 91753 92216 + 0 NA NA NA NA NA Interval_115447 chr4 99028089 99028939 + 0 NA intron (ENSMUSG00000028556.15, intron 14 of 47) protein_coding-intron (ENSMUSG00000028556.15, intron 14 of 48) -4665 ENSMUSG00000028553.12 ENSMUSG00000028553 ENSMUST00000125546 Angptl3 protein_coding Interval_34685 chr12 8684443 8685299 + 0 NA intron (ENSMUSG00000020594.14, intron 2 of 4) protein_coding-intron (ENSMUSG00000020594.14, intron 1 of 19) 10737 ENSMUSG00000020594.14 ENSMUSG00000020594 ENSMUST00000171608 Pum2 protein_coding Interval_149941 chr7 102999920 103000966 + 0 NA intron (ENSMUSG00000110033.1, intron 1 of 1) unprocessed_pseudogene-intron (ENSMUSG00000110033.1, intron 1 of 1) 4754 ENSMUSG00000110033.1 ENSMUSG00000110033 ENSMUST00000210954 AC161520.1 unprocessed_pseudogene Interval_79672 chr18 34433049 34433540 + 0 NA exon (ENSMUSG00000014503.15, exon 11 of 15) protein_coding-exon (ENSMUSG00000014503.15, exon 11 of 15) 24805 ENSMUSG00000014503.15 ENSMUSG00000014503 ENSMUST00000166156 Pkd2l2 protein_coding Interval_167569 chr9 70515511 70515780 + 0 NA Intergenic Intergenic -1555 ENSMUSG00000088284.1 ENSMUSG00000088284 ENSMUST00000157659 Gm23588 snRNA Interval_70022 chr17 4633955 4634554 + 0 NA promoter-TSS (ENSMUSG00000116767.1) lincRNA-promoter-TSS (ENSMUSG00000116767.1) -724 ENSMUSG00000116767.1 ENSMUSG00000116767 ENSMUST00000232624 4930517M08Rik lincRNA Interval_54075 chr14 65026070 65026736 + 0 NA intron (ENSMUSG00000021975.9, intron 10 of 16) protein_coding-intron (ENSMUSG00000021975.9, intron 10 of 16) 71702 ENSMUSG00000021978.9 ENSMUSG00000021978 ENSMUST00000223989 Extl3 protein_coding Interval_118901 chr4 134364033 134364232 + 0 NA intron (ENSMUSG00000028838.11, intron 3 of 4) protein_coding-intron (ENSMUSG00000028838.11, intron 3 of 10) 1292 ENSMUSG00000028838.11 ENSMUSG00000028838 ENSMUST00000142730 Extl1 protein_coding Interval_136319 chr6 52981899 52982373 + 0 NA intron (ENSMUSG00000063568.11, intron 1 of 4) protein_coding-intron (ENSMUSG00000063568.11, intron 1 of 4) 28396 ENSMUSG00000089209.1 ENSMUSG00000089209 ENSMUST00000158584 Gm26215 scaRNA Interval_74488 chr17 51831507 51833815 + 0 NA promoter-TSS (ENSMUSG00000023927.15) protein_coding-promoter-TSS (ENSMUSG00000023927.15) -158 ENSMUSG00000103753.1 ENSMUSG00000103753 ENSMUST00000194780 Gm6934 TEC Interval_3934 chr1 64927901 64928094 + 0 NA promoter-TSS (ENSMUSG00000051344.13) protein_coding-promoter-TSS (ENSMUSG00000051344.13) -6405 ENSMUSG00000097264.1 ENSMUSG00000097264 ENSMUST00000181350 Rpl31-ps24 processed_pseudogene Interval_67498 chr16 49936321 49936678 + 0 NA Intergenic Intergenic 80854 ENSMUSG00000055447.19 ENSMUSG00000055447 ENSMUST00000229104 Cd47 protein_coding Interval_116828 chr4 117539262 117539889 + 0 NA Intergenic Intergenic -25183 ENSMUSG00000033423.16 ENSMUSG00000033423 ENSMUST00000134379 Eri3 protein_coding Interval_76157 chr17 75681449 75681767 + 0 NA Intergenic Intergenic 20368 ENSMUSG00000117540.1 ENSMUSG00000117540 ENSMUST00000234396 Gm9360 processed_pseudogene Interval_16856 chr10 69295842 69297017 + 0 NA Intergenic Intergenic -15710 ENSMUSG00000112798.1 ENSMUSG00000112798 ENSMUST00000217861 Gm40685 lincRNA Interval_134268 chr6 24297050 24297698 + 0 NA Intergenic Intergenic 154006 ENSMUSG00000096522.1 ENSMUSG00000096522 ENSMUST00000178407 Gm26386 miRNA Interval_89964 chr2 26885339 26886930 + 0 NA Intergenic Intergenic 16656 ENSMUSG00000036160.13 ENSMUSG00000036160 ENSMUST00000127691 Surf6 protein_coding Interval_76681 chr17 83451296 83451749 + 0 NA intron (ENSMUSG00000032624.16, intron 13 of 22) protein_coding-intron (ENSMUSG00000032624.16, intron 11 of 20) -4779 ENSMUSG00000032624.16 ENSMUSG00000032624 ENSMUST00000235121 Eml4 protein_coding Interval_48494 chr13 99421389 99421925 + 0 NA exon (ENSMUSG00000052727.6, exon 7 of 7) protein_coding-exon (ENSMUSG00000052727.6, exon 7 of 7) -8993 ENSMUSG00000097828.2 ENSMUSG00000097828 ENSMUST00000225937 6430562O15Rik processed_transcript Interval_105259 chr3 84304371 84305972 + 0 NA promoter-TSS (ENSMUSG00000027993.16) protein_coding-promoter-TSS (ENSMUSG00000027993.16) 1706 ENSMUSG00000027993.16 ENSMUSG00000027993 ENSMUST00000197845 Trim2 protein_coding Interval_31911 chr11 103786595 103786891 + 0 NA intron (ENSMUSG00000000125.5, intron 1 of 4) protein_coding-intron (ENSMUSG00000000125.5, intron 1 of 4) 12593 ENSMUSG00000000125.5 ENSMUSG00000000125 ENSMUST00000000127 Wnt3 protein_coding Interval_28100 chr11 72813626 72814963 + 0 NA intron (ENSMUSG00000055670.14, intron 1 of 54) protein_coding-intron (ENSMUSG00000055670.14, intron 1 of 54) -13816 ENSMUSG00000089224.1 ENSMUSG00000089224 ENSMUST00000158599 Gm22075 misc_RNA Interval_22553 chr11 11742494 11742970 + 0 NA intron (ENSMUSG00000018654.17, intron 4 of 8) protein_coding-intron (ENSMUSG00000018654.17, intron 3 of 6) -46293 ENSMUSG00000073145.6 ENSMUSG00000073145 ENSMUST00000132007 Gm12000 antisense Interval_128447 chr5 113365921 113366539 + 0 NA Intergenic Intergenic 8936 ENSMUSG00000053873.1 ENSMUSG00000053873 ENSMUST00000066573 Aym1 protein_coding Interval_66178 chr16 32147386 32147669 + 0 NA TTS (ENSMUSG00000052384.14) protein_coding-TTS (ENSMUSG00000052384.14) 17949 ENSMUSG00000052384.14 ENSMUSG00000052384 ENSMUST00000136809 Nrros protein_coding Interval_43181 chr13 24906063 24907356 + 0 NA TTS (ENSMUSG00000035936.6) protein_coding-TTS (ENSMUSG00000035936.6) 1089 ENSMUSG00000086796.2 ENSMUSG00000086796 ENSMUST00000225028 4932702P03Rik antisense Interval_15457 chr10 46933167 46933620 + 0 NA Intergenic Intergenic -76891 ENSMUSG00000111499.1 ENSMUSG00000111499 ENSMUST00000216234 Gm47562 processed_pseudogene Interval_63586 chr15 102213865 102214568 + 0 NA exon (ENSMUSG00000046897.17, exon 8 of 8) protein_coding-exon (ENSMUSG00000046897.17, exon 8 of 8) 9638 ENSMUSG00000046897.17 ENSMUSG00000046897 ENSMUST00000119830 Zfp740 protein_coding Interval_12330 chr1 192107019 192108508 + 0 NA exon (ENSMUSG00000037395.15, exon 1 of 1) protein_coding-exon (ENSMUSG00000037395.15, exon 1 of 1) 15408 ENSMUSG00000097089.2 ENSMUSG00000097089 ENSMUST00000181127 Gm26879 antisense Interval_55419 chr14 87039488 87040775 + 0 NA intron (ENSMUSG00000022021.14, intron 3 of 15) protein_coding-intron (ENSMUSG00000022021.14, intron 4 of 27) 101104 ENSMUSG00000022021.14 ENSMUSG00000022021 ENSMUST00000226134 Diaph3 protein_coding Interval_163274 chr9 20466908 20467617 + 0 NA Intergenic Intergenic -7435 ENSMUSG00000063108.15 ENSMUSG00000063108 ENSMUST00000162438 Zfp26 protein_coding Interval_131279 chr5 136137859 136138151 + 0 NA promoter-TSS (ENSMUSG00000039754.10) protein_coding-promoter-TSS (ENSMUSG00000039754.10) 1803 ENSMUSG00000039754.10 ENSMUSG00000039754 ENSMUST00000100568 Alkbh4 protein_coding Interval_56201 chr14 112135613 112135822 + 0 NA Intergenic Intergenic -104479 ENSMUSG00000115558.1 ENSMUSG00000115558 ENSMUST00000227711 Gm49000 TEC Interval_170052 chr9 104085469 104086759 + 0 NA exon (ENSMUSG00000079355.5, exon 3 of 3) protein_coding-exon (ENSMUSG00000079355.5, exon 3 of 3) 14897 ENSMUSG00000079355.5 ENSMUSG00000079355 ENSMUST00000188000 Ackr4 protein_coding Interval_62254 chr15 89178724 89181262 + 0 NA intron (ENSMUSG00000036606.17, intron 1 of 37) protein_coding-intron (ENSMUSG00000036606.17, intron 1 of 37) 5544 ENSMUSG00000098663.1 ENSMUSG00000098663 ENSMUST00000184207 Mir6958 miRNA Interval_61434 chr15 81593153 81593373 + 0 NA intron (ENSMUSG00000055024.12, intron 1 of 10) protein_coding-intron (ENSMUSG00000055024.12, intron 1 of 30) 1170 ENSMUSG00000084739.1 ENSMUSG00000084739 ENSMUST00000122790 Gm22067 snRNA Interval_59482 chr15 53983489 53984535 + 0 NA Intergenic Intergenic 51970 ENSMUSG00000097938.1 ENSMUSG00000097938 ENSMUST00000182320 Gm26933 processed_pseudogene Interval_46046 chr13 60569555 60570157 + 0 NA Intergenic Intergenic -32091 ENSMUSG00000021559.14 ENSMUSG00000021559 ENSMUST00000225952 Dapk1 protein_coding Interval_123419 chr5 32397833 32398961 + 0 NA promoter-TSS (ENSMUSG00000107036.1) lincRNA-promoter-TSS (ENSMUSG00000107036.1) -5091 ENSMUSG00000107036.1 ENSMUSG00000107036 ENSMUST00000202171 Gm7596 lincRNA Interval_48636 chr13 100775171 100776767 + 0 NA promoter-TSS (ENSMUSG00000045273.8) protein_coding-promoter-TSS (ENSMUSG00000045273.8) -186 ENSMUSG00000045273.8 ENSMUSG00000045273 ENSMUST00000136694 Cenph protein_coding Interval_167369 chr9 67875036 67875634 + 0 NA intron (ENSMUSG00000035284.10, intron 9 of 26) protein_coding-intron (ENSMUSG00000035284.10, intron 9 of 84) 34923 ENSMUSG00000035284.10 ENSMUSG00000035284 ENSMUST00000215524 Vps13c protein_coding Interval_82295 chr18 70324653 70325350 + 0 NA Intergenic Intergenic -48701 ENSMUSG00000118497.1 ENSMUSG00000118497 ENSMUST00000239144 AC124764.1 protein_coding Interval_139605 chr6 102684191 102685041 + 0 NA Intergenic Intergenic -23720 ENSMUSG00000107533.1 ENSMUSG00000107533 ENSMUST00000204142 Gm44422 processed_pseudogene Interval_121438 chr4 155801264 155804026 + 0 NA promoter-TSS (ENSMUSG00000029066.12) protein_coding-promoter-TSS (ENSMUSG00000029066.12) -1002 ENSMUSG00000029066.12 ENSMUSG00000029066 ENSMUST00000143503 Mrpl20 protein_coding Interval_79178 chr18 25470565 25470773 + 0 NA Intergenic Intergenic 30570 ENSMUSG00000024268.16 ENSMUSG00000024268 ENSMUST00000224143 Celf4 protein_coding Interval_32488 chr11 107859405 107859774 + 0 NA Intergenic Intergenic 7844 ENSMUSG00000098991.1 ENSMUSG00000098991 ENSMUST00000184579 Gm27595 rRNA Interval_169921 chr9 102990520 102990863 + 0 NA intron (ENSMUSG00000032548.14, intron 1 of 3) protein_coding-intron (ENSMUSG00000032548.14, intron 1 of 3) -1204 ENSMUSG00000084539.1 ENSMUSG00000084539 ENSMUST00000122590 Gm25842 misc_RNA Interval_41636 chr12 117251591 117252182 + 0 NA intron (ENSMUSG00000056553.14, intron 19 of 22) protein_coding-intron (ENSMUSG00000056553.14, intron 19 of 22) 1069 ENSMUSG00000065538.1 ENSMUSG00000065538 ENSMUST00000083604 Mir153 miRNA Interval_43829 chr13 37446676 37447173 + 0 NA Intergenic Intergenic 4233 ENSMUSG00000100932.1 ENSMUSG00000100932 ENSMUST00000191359 Gm29459 lincRNA Interval_83945 chr19 5741578 5742651 + 0 NA promoter-TSS (ENSMUSG00000024940.11) protein_coding-promoter-TSS (ENSMUSG00000024940.11) -10401 ENSMUSG00000118125.1 ENSMUSG00000118125 ENSMUST00000160852 Gm50387 protein_coding Interval_24639 chr11 35523329 35524354 + 0 NA intron (ENSMUSG00000056427.10, intron 5 of 35) protein_coding-intron (ENSMUSG00000056427.10, intron 5 of 35) -92975 ENSMUSG00000065583.1 ENSMUSG00000065583 ENSMUST00000083649 Mir218-2 miRNA Interval_70770 chr17 14287236 14288659 + 0 NA intron (ENSMUSG00000023886.10, intron 1 of 3) protein_coding-intron (ENSMUSG00000023886.10, intron 1 of 12) 38096 ENSMUSG00000117254.1 ENSMUSG00000117254 ENSMUST00000233271 Gm34567 lincRNA Interval_25170 chr11 44739179 44739365 + 0 NA intron (ENSMUSG00000057098.14, intron 6 of 15) protein_coding-intron (ENSMUSG00000057098.14, intron 6 of 15) -76596 ENSMUSG00000085784.1 ENSMUSG00000085784 ENSMUST00000130493 Gm12158 antisense Interval_61392 chr15 81301179 81303243 + 0 NA intron (ENSMUSG00000115970.1, intron 1 of 3) lincRNA-intron (ENSMUSG00000115970.1, intron 1 of 3) -50349 ENSMUSG00000115970.1 ENSMUSG00000115970 ENSMUST00000230042 8430426J06Rik lincRNA Interval_22903 chr11 17237850 17238417 + 0 NA Intergenic Intergenic -19555 ENSMUSG00000000581.8 ENSMUSG00000000581 ENSMUST00000130330 C1d protein_coding Interval_46622 chr13 67686191 67687102 + 0 NA intron (ENSMUSG00000048280.18, intron 1 of 4) protein_coding-intron (ENSMUSG00000048280.18, intron 1 of 4) -3151 ENSMUSG00000048280.18 ENSMUSG00000048280 ENSMUST00000223721 Zfp738 protein_coding Interval_24609 chr11 35194103 35194408 + 0 NA intron (ENSMUSG00000056427.10, intron 2 of 2) protein_coding-intron (ENSMUSG00000056427.10, intron 3 of 35) -20146 ENSMUSG00000088125.1 ENSMUSG00000088125 ENSMUST00000157500 Gm26070 snoRNA Interval_123093 chr5 29631631 29632146 + 0 NA exon (ENSMUSG00000039000.8, exon 14 of 14) protein_coding-exon (ENSMUSG00000039000.8, exon 14 of 14) 975 ENSMUSG00000039000.8 ENSMUSG00000039000 ENSMUST00000199598 Ube3c protein_coding Interval_72053 chr17 27738560 27738772 + 0 NA intron (ENSMUSG00000086485.2, intron 1 of 2) lincRNA-intron (ENSMUSG00000086485.2, intron 1 of 2) 3446 ENSMUSG00000086485.2 ENSMUSG00000086485 ENSMUST00000156950 Gm15458 lincRNA Interval_59645 chr15 57313298 57315176 + 0 NA intron (ENSMUSG00000022366.12, intron 2 of 11) protein_coding-intron (ENSMUSG00000022366.12, intron 2 of 11) -33512 ENSMUSG00000115226.1 ENSMUSG00000115226 ENSMUST00000226272 Gm49229 processed_pseudogene Interval_53050 chr14 53914357 53914564 + 0 NA Intergenic Intergenic -12518 ENSMUSG00000104650.1 ENSMUSG00000104650 ENSMUST00000198117 Trav22 TR_V_pseudogene Interval_9808 chr1 162554838 162555429 + 0 NA Intergenic Intergenic -6604 ENSMUSG00000026694.19 ENSMUSG00000026694 ENSMUST00000195027 Eef1aknmt protein_coding Interval_94456 chr2 91349858 91350220 + 0 NA intron (ENSMUSG00000040591.18, intron 3 of 3) protein_coding-intron (ENSMUSG00000040591.18, intron 3 of 8) -5850 ENSMUSG00000081248.1 ENSMUSG00000081248 ENSMUST00000120422 Gm13787 processed_pseudogene Interval_124234 chr5 41816429 41816652 + 0 NA exon (ENSMUSG00000061755.10, exon 10 of 27) protein_coding-exon (ENSMUSG00000061755.10, exon 10 of 27) 27775 ENSMUSG00000061755.10 ENSMUSG00000061755 ENSMUST00000202200 Bod1l protein_coding Interval_48273 chr13 97587247 97590456 + 0 NA Intergenic Intergenic -20685 ENSMUSG00000114599.1 ENSMUSG00000114599 ENSMUST00000225459 Gm48070 processed_pseudogene Interval_93710 chr2 76029174 76030572 + 0 NA intron (ENSMUSG00000075270.11, intron 13 of 14) protein_coding-intron (ENSMUSG00000075270.11, intron 16 of 19) -47906 ENSMUSG00000075271.4 ENSMUSG00000075271 ENSMUST00000099994 Ttc30a1 protein_coding Interval_101250 chr2 179852497 179852962 + 0 NA intron (ENSMUSG00000000305.12, intron 6 of 15) protein_coding-intron (ENSMUSG00000000305.12, intron 6 of 15) 75566 ENSMUSG00000000305.12 ENSMUSG00000000305 ENSMUST00000098996 Cdh4 protein_coding Interval_18398 chr10 85531303 85532082 + 0 NA intron (ENSMUSG00000020042.15, intron 1 of 16) protein_coding-intron (ENSMUSG00000020042.15, intron 1 of 9) -113511 ENSMUSG00000020042.15 ENSMUSG00000020042 ENSMUST00000145433 Btbd11 protein_coding Interval_122517 chr5 23538436 23538686 + 0 NA intron (ENSMUSG00000062604.11, intron 2 of 3) protein_coding-intron (ENSMUSG00000062604.11, intron 6 of 14) 3557 ENSMUSG00000062604.11 ENSMUSG00000062604 ENSMUST00000196592 Srpk2 protein_coding Interval_140998 chr6 124165926 124166134 + 0 NA intron (ENSMUSG00000107718.2, intron 2 of 5) transcribed_unprocessed_pseudogene-intron (ENSMUSG00000107718.2, intron 2 of 5) 19876 ENSMUSG00000107718.2 ENSMUSG00000107718 ENSMUST00000204750 Vmn2r-ps34 transcribed_unprocessed_pseudogene Interval_99161 chr2 157673801 157675083 + 0 NA Intergenic Intergenic 39359 ENSMUSG00000077290.1 ENSMUSG00000077290 ENSMUST00000104102 Gm25407 snoRNA Interval_59611 chr15 56065998 56066953 + 0 NA Intergenic Intergenic -16643 ENSMUSG00000115678.1 ENSMUSG00000115678 ENSMUST00000228202 Gm49212 lincRNA Interval_105872 chr3 89849297 89849983 + 0 NA exon (ENSMUSG00000046280.9, exon 3 of 6) protein_coding-exon (ENSMUSG00000046280.9, exon 3 of 6) 11751 ENSMUSG00000046280.9 ENSMUSG00000046280 ENSMUST00000197454 She protein_coding Interval_143216 chr7 4532093 4532663 + 0 NA promoter-TSS (ENSMUSG00000055809.7) protein_coding-promoter-TSS (ENSMUSG00000055809.7) 75 ENSMUSG00000055809.7 ENSMUSG00000055809 ENSMUST00000094897 Dnaaf3 protein_coding Interval_155693 chr8 36188883 36189322 + 0 NA intron (ENSMUSG00000110176.1, intron 1 of 3) lincRNA-intron (ENSMUSG00000110176.1, intron 1 of 3) 730 ENSMUSG00000110176.1 ENSMUSG00000110176 ENSMUST00000209235 Gm35520 lincRNA Interval_77977 chr18 6301579 6302733 + 0 NA Intergenic Intergenic -30476 ENSMUSG00000073640.3 ENSMUSG00000073640 ENSMUST00000097682 Rpl27-ps3 processed_pseudogene Interval_101370 chr2 180844996 180845283 + 0 NA intron (ENSMUSG00000086166.1, intron 1 of 3) lincRNA-intron (ENSMUSG00000086166.1, intron 1 of 3) -2513 ENSMUSG00000085728.1 ENSMUSG00000085728 ENSMUST00000146224 Gm14339 lincRNA Interval_51124 chr14 23791540 23791959 + 0 NA intron (ENSMUSG00000063142.15, intron 1 of 28) protein_coding-intron (ENSMUSG00000063142.15, intron 1 of 28) -213242 ENSMUSG00000114953.1 ENSMUSG00000114953 ENSMUST00000223837 4930519K11Rik bidirectional_promoter_lncRNA Interval_170791 chr9 110796767 110798784 + 0 NA promoter-TSS (ENSMUSG00000044664.7) protein_coding-promoter-TSS (ENSMUSG00000044664.7) -391 ENSMUSG00000044664.7 ENSMUSG00000044664 ENSMUST00000035715 Prss42 protein_coding Interval_157449 chr8 70439160 70440345 + 0 NA promoter-TSS (ENSMUSG00000003575.13) protein_coding-promoter-TSS (ENSMUSG00000003575.13) -8467 ENSMUSG00000003575.13 ENSMUSG00000003575 ENSMUST00000153632 Crtc1 protein_coding Interval_111106 chr4 12110604 12111249 + 0 NA Intergenic Intergenic -3358 ENSMUSG00000083246.1 ENSMUSG00000083246 ENSMUST00000120647 Gm11839 processed_pseudogene Interval_50535 chr14 14764242 14764837 + 0 NA exon (ENSMUSG00000021733.11, exon 1 of 1) protein_coding-exon (ENSMUSG00000021733.11, exon 1 of 1) -38876 ENSMUSG00000042567.20 ENSMUSG00000042567 ENSMUST00000136826 Nek10 protein_coding Interval_11714 chr1 184832152 184832714 + 0 NA exon (ENSMUSG00000073481.9, exon 3 of 3) protein_coding-exon (ENSMUSG00000073481.9, exon 3 of 3) -5176 ENSMUSG00000073481.9 ENSMUSG00000073481 ENSMUST00000160982 Mtarc2 protein_coding Interval_52676 chr14 48510508 48510821 + 0 NA intron (ENSMUSG00000036339.18, intron 15 of 15) protein_coding-intron (ENSMUSG00000036339.18, intron 15 of 15) -12969 ENSMUSG00000115756.1 ENSMUSG00000115756 ENSMUST00000226673 Gm49519 processed_transcript Interval_47125 chr13 76017895 76019019 + 0 NA promoter-TSS (ENSMUSG00000043190.14) protein_coding-promoter-TSS (ENSMUSG00000043190.14) 11 ENSMUSG00000043190.14 ENSMUSG00000043190 ENSMUST00000224093 Rfesd protein_coding Interval_149392 chr7 98085608 98086501 + 0 NA intron (ENSMUSG00000030761.16, intron 13 of 46) protein_coding-intron (ENSMUSG00000030761.16, intron 14 of 47) 5074 ENSMUSG00000030761.16 ENSMUSG00000030761 ENSMUST00000131632 Myo7a protein_coding Interval_765 chr1 10804444 10806285 + 0 NA promoter-TSS (ENSMUSG00000100212.1) processed_pseudogene-promoter-TSS (ENSMUSG00000100212.1) 83 ENSMUSG00000100212.1 ENSMUSG00000100212 ENSMUST00000189483 Gm5522 processed_pseudogene Interval_154893 chr8 24868253 24868572 + 0 NA intron (ENSMUSG00000037437.18, intron 17 of 21) protein_coding-intron (ENSMUSG00000037437.18, intron 17 of 19) -44346 ENSMUSG00000031554.18 ENSMUSG00000031554 ENSMUST00000118419 Adam5 protein_coding Interval_110216 chr3 154392786 154394167 + 0 NA Intergenic Intergenic 61479 ENSMUSG00000093738.2 ENSMUSG00000093738 ENSMUST00000181234 AI606473 processed_transcript Interval_94424 chr2 91123325 91124341 + 0 NA intron (ENSMUSG00000002100.15, intron 12 of 34) protein_coding-intron (ENSMUSG00000002100.15, intron 12 of 34) 5689 ENSMUSG00000002100.15 ENSMUSG00000002100 ENSMUST00000169776 Mybpc3 protein_coding Interval_148638 chr7 83668870 83669154 + 0 NA intron (ENSMUSG00000001741.12, intron 10 of 12) protein_coding-intron (ENSMUSG00000001741.12, intron 9 of 18) 9437 ENSMUSG00000085080.1 ENSMUSG00000085080 ENSMUST00000125131 2310044K18Rik antisense Interval_142234 chr6 139576374 139577855 + 0 NA promoter-TSS (ENSMUSG00000108147.1) TEC-promoter-TSS (ENSMUSG00000108147.1) 91 ENSMUSG00000108147.1 ENSMUSG00000108147 ENSMUST00000203475 4930443G03Rik TEC Interval_34704 chr12 8798824 8799125 + 0 NA Intergenic Intergenic 27561 ENSMUSG00000020592.14 ENSMUSG00000020592 ENSMUST00000160348 Sdc1 protein_coding Interval_160886 chr8 114633924 114635124 + 0 NA intron (ENSMUSG00000004637.15, intron 1 of 2) protein_coding-intron (ENSMUSG00000004637.15, intron 5 of 8) 7590 ENSMUSG00000089723.1 ENSMUSG00000089723 ENSMUST00000160544 Gm16117 antisense Interval_114668 chr4 83622890 83623881 + 0 NA intron (ENSMUSG00000052407.17, intron 10 of 25) protein_coding-intron (ENSMUSG00000052407.17, intron 10 of 25) 26082 ENSMUSG00000098217.1 ENSMUSG00000098217 ENSMUST00000182160 Gm27046 processed_pseudogene Interval_14651 chr10 37970349 37971015 + 0 NA Intergenic Intergenic 39002 ENSMUSG00000096080.1 ENSMUSG00000096080 ENSMUST00000175235 Gm24710 miRNA Interval_123202 chr5 30606060 30606356 + 0 NA intron (ENSMUSG00000049265.7, intron 1 of 1) protein_coding-intron (ENSMUSG00000049265.7, intron 1 of 1) -15165 ENSMUSG00000049265.7 ENSMUSG00000049265 ENSMUST00000197428 Kcnk3 protein_coding Interval_25607 chr11 50187462 50187753 + 0 NA exon (ENSMUSG00000020381.10, exon 4 of 6) protein_coding-exon (ENSMUSG00000020381.10, exon 4 of 6) 13163 ENSMUSG00000020381.10 ENSMUSG00000020381 ENSMUST00000123164 Mrnip protein_coding Interval_15365 chr10 45112986 45113205 + 0 NA intron (ENSMUSG00000019849.11, intron 7 of 14) protein_coding-intron (ENSMUSG00000019849.11, intron 7 of 14) -17387 ENSMUSG00000077082.1 ENSMUSG00000077082 ENSMUST00000103894 Gm23766 miRNA Interval_59860 chr15 59971857 59972163 + 0 NA Intergenic Intergenic -5712 ENSMUSG00000093849.1 ENSMUSG00000093849 ENSMUST00000178617 Gm7083 processed_pseudogene Interval_85265 chr19 24233818 24234452 + 0 NA Intergenic Intergenic 44036 ENSMUSG00000059363.10 ENSMUSG00000059363 ENSMUST00000132688 Fxn protein_coding Interval_96192 chr2 120447269 120447571 + 0 NA intron (ENSMUSG00000062646.12, intron 16 of 22) protein_coding-intron (ENSMUSG00000062646.12, intron 17 of 23) -8599 ENSMUSG00000118623.1 ENSMUSG00000118623 ENSMUST00000124129 AL935121.1 protein_coding Interval_52028 chr14 34701119 34701331 + 0 NA intron (ENSMUSG00000041408.18, intron 4 of 19) protein_coding-intron (ENSMUSG00000041408.18, intron 4 of 18) -27462 ENSMUSG00000115007.1 ENSMUSG00000115007 ENSMUST00000228874 5830448L01Rik bidirectional_promoter_lncRNA Interval_105968 chr3 90355132 90355777 + 0 NA exon (ENSMUSG00000042390.9, exon 8 of 10) protein_coding-exon (ENSMUSG00000042390.9, exon 8 of 10) 4036 ENSMUSG00000042390.9 ENSMUSG00000042390 ENSMUST00000206907 Gatad2b protein_coding Interval_47004 chr13 74237392 74238254 + 0 NA intron (ENSMUSG00000021575.16, intron 1 of 3) protein_coding-intron (ENSMUSG00000021575.16, intron 4 of 10) 27642 ENSMUSG00000021575.16 ENSMUSG00000021575 ENSMUST00000222032 Ahrr protein_coding Interval_158580 chr8 84614502 84614781 + 0 NA intron (ENSMUSG00000086067.1, intron 3 of 4) protein_coding-intron (ENSMUSG00000034656.18, intron 36 of 46) 2543 ENSMUSG00000086067.1 ENSMUSG00000086067 ENSMUST00000127527 Gm16183 antisense Interval_91339 chr2 37908482 37909045 + 0 NA intron (ENSMUSG00000035392.17, intron 12 of 18) protein_coding-intron (ENSMUSG00000035392.17, intron 13 of 21) 110404 ENSMUSG00000107586.1 ENSMUSG00000107586 ENSMUST00000204461 Gm44283 TEC Interval_99628 chr2 163684935 163685215 + 0 NA TTS (ENSMUSG00000087129.1) antisense-TTS (ENSMUSG00000087129.1) 7204 ENSMUSG00000087129.1 ENSMUSG00000087129 ENSMUST00000154065 Gm16316 antisense Interval_148232 chr7 80011618 80011888 + 0 NA Intergenic Intergenic -16061 ENSMUSG00000048897.15 ENSMUSG00000048897 ENSMUST00000206104 Zfp710 protein_coding Interval_18283 chr10 84562516 84563260 + 0 NA Intergenic Intergenic -9550 ENSMUSG00000097076.1 ENSMUSG00000097076 ENSMUST00000181466 Platr7 lincRNA Interval_116513 chr4 114931355 114931633 + 0 NA Intergenic Intergenic -5481 ENSMUSG00000044518.3 ENSMUSG00000044518 ENSMUST00000050940 Foxe3 protein_coding Interval_167239 chr9 66591948 66593699 + 0 NA exon (ENSMUSG00000032376.12, exon 1 of 14) protein_coding-exon (ENSMUSG00000032376.12, exon 1 of 14) 183 ENSMUSG00000032376.12 ENSMUSG00000032376 ENSMUST00000139952 Usp3 protein_coding Interval_49419 chr13 111845485 111845772 + 0 NA Intergenic Intergenic 6994 ENSMUSG00000086861.1 ENSMUSG00000086861 ENSMUST00000149661 Gm15325 lincRNA Interval_19885 chr10 110918551 110920828 + 0 NA promoter-TSS (ENSMUSG00000020186.7) protein_coding-promoter-TSS (ENSMUSG00000020186.7) -501 ENSMUSG00000020186.7 ENSMUSG00000020186 ENSMUST00000220301 Csrp2 protein_coding Interval_53235 chr14 55482239 55483395 + 0 NA intron (ENSMUSG00000022210.7, intron 2 of 4) protein_coding-intron (ENSMUSG00000022210.7, intron 2 of 7) 3883 ENSMUSG00000022210.7 ENSMUSG00000022210 ENSMUST00000227542 Dhrs4 protein_coding Interval_106911 chr3 101812208 101813039 + 0 NA TTS (ENSMUSG00000044313.13) protein_coding-TTS (ENSMUSG00000044313.13) 36336 ENSMUSG00000044313.13 ENSMUSG00000044313 ENSMUST00000118411 Mab21l3 protein_coding Interval_150331 chr7 109654837 109655758 + 0 NA intron (ENSMUSG00000031024.13, intron 1 of 3) protein_coding-intron (ENSMUSG00000031024.13, intron 1 of 3) -38544 ENSMUSG00000031024.13 ENSMUSG00000031024 ENSMUST00000208734 Denn2b protein_coding Interval_55228 chr14 79508476 79509190 + 0 NA intron (ENSMUSG00000036461.16, intron 1 of 8) protein_coding-intron (ENSMUSG00000036461.16, intron 1 of 8) -6853 ENSMUSG00000036461.16 ENSMUSG00000036461 ENSMUST00000227104 Elf1 protein_coding Interval_68489 chr16 78156529 78157037 + 0 NA Intergenic Intergenic 39683 ENSMUSG00000116609.1 ENSMUSG00000116609 ENSMUST00000231333 Gm5675 processed_pseudogene Interval_8010 chr1 135190668 135191147 + 0 NA Intergenic Intergenic -23226 ENSMUSG00000026424.8 ENSMUSG00000026424 ENSMUST00000027682 Gpr37l1 protein_coding Interval_29069 chr11 80153492 80154779 + 0 NA promoter-TSS (ENSMUSG00000020709.15) protein_coding-promoter-TSS (ENSMUSG00000020709.15) 19 ENSMUSG00000020709.15 ENSMUSG00000020709 ENSMUST00000134118 Adap2 protein_coding Interval_8418 chr1 139028567 139028834 + 0 NA intron (ENSMUSG00000056268.15, intron 3 of 8) protein_coding-intron (ENSMUSG00000056268.15, intron 2 of 20) -1485 ENSMUSG00000102157.1 ENSMUSG00000102157 ENSMUST00000193378 Gm37470 TEC Interval_147312 chr7 65737074 65737876 + 0 NA Intergenic Intergenic 43999 ENSMUSG00000078681.10 ENSMUSG00000078681 ENSMUST00000206361 Tm2d3 protein_coding Interval_11416 chr1 181827640 181829059 + 0 NA intron (ENSMUSG00000004880.11, intron 1 of 4) protein_coding-intron (ENSMUSG00000004880.11, intron 6 of 13) 12219 ENSMUSG00000089429.1 ENSMUSG00000089429 ENSMUST00000158804 Gm26004 rRNA Interval_47114 chr13 75903157 75903772 + 0 NA intron (ENSMUSG00000021589.13, intron 2 of 5) protein_coding-intron (ENSMUSG00000021589.13, intron 6 of 11) -1683 ENSMUSG00000070170.1 ENSMUSG00000070170 ENSMUST00000093660 Gm24163 snoRNA Interval_72520 chr17 30399976 30400169 + 0 NA intron (ENSMUSG00000062202.14, intron 6 of 6) protein_coding-intron (ENSMUSG00000062202.14, intron 6 of 11) -4039 ENSMUSG00000117962.1 ENSMUSG00000117962 ENSMUST00000235315 Gm6402 processed_pseudogene Interval_75984 chr17 74165213 74165430 + 0 NA promoter-TSS (ENSMUSG00000117031.1) processed_pseudogene-promoter-TSS (ENSMUSG00000117031.1) -747 ENSMUSG00000117031.1 ENSMUSG00000117031 ENSMUST00000233609 Gm49882 processed_pseudogene Interval_134859 chr6 32739605 32740022 + 0 NA Intergenic Intergenic 12475 ENSMUSG00000106873.1 ENSMUSG00000106873 ENSMUST00000202626 BC049739 lincRNA Interval_169721 chr9 100679297 100679551 + 0 NA intron (ENSMUSG00000037286.15, intron 2 of 6) protein_coding-intron (ENSMUSG00000037286.15, intron 1 of 32) 13585 ENSMUSG00000103657.1 ENSMUSG00000103657 ENSMUST00000192389 Gm37204 TEC Interval_22036 chr11 5912779 5913265 + 0 NA intron (ENSMUSG00000041798.15, intron 1 of 9) protein_coding-intron (ENSMUSG00000041798.15, intron 1 of 9) -2293 ENSMUSG00000084819.1 ENSMUSG00000084819 ENSMUST00000135132 Gm11967 antisense Interval_138681 chr6 91129016 91129288 + 0 NA Intergenic Intergenic -8217 ENSMUSG00000107882.1 ENSMUSG00000107882 ENSMUST00000204082 Gm44278 lincRNA Interval_38282 chr12 76889557 76890363 + 0 NA intron (ENSMUSG00000033373.16, intron 3 of 5) protein_coding-intron (ENSMUSG00000033373.16, intron 6 of 11) 2902 ENSMUSG00000033373.16 ENSMUSG00000033373 ENSMUST00000130605 Fntb protein_coding Interval_75698 chr17 70737109 70739108 + 0 NA intron (ENSMUSG00000003279.17, intron 5 of 10) protein_coding-intron (ENSMUSG00000003279.17, intron 9 of 14) 17474 ENSMUSG00000097282.1 ENSMUSG00000097282 ENSMUST00000181546 5031415H12Rik antisense Interval_90326 chr2 29779428 29779724 + 0 NA exon (ENSMUSG00000039826.13, exon 2 of 2) protein_coding-exon (ENSMUSG00000039826.13, exon 2 of 2) 8046 ENSMUSG00000039826.13 ENSMUSG00000039826 ENSMUST00000175644 Trub2 protein_coding Interval_138699 chr6 91268342 91268827 + 0 NA exon (ENSMUSG00000064080.12, exon 15 of 18) protein_coding-exon (ENSMUSG00000064080.12, exon 15 of 18) 55757 ENSMUSG00000064080.12 ENSMUSG00000064080 ENSMUST00000137029 Fbln2 protein_coding Interval_86096 chr19 36586946 36587197 + 0 NA intron (ENSMUSG00000041180.13, intron 1 of 15) protein_coding-intron (ENSMUSG00000041180.13, intron 5 of 20) 1582 ENSMUSG00000041180.13 ENSMUSG00000041180 ENSMUST00000142404 Hectd2 protein_coding Interval_125045 chr5 64082374 64084204 + 0 NA Intergenic Intergenic 18218 ENSMUSG00000094244.1 ENSMUSG00000094244 ENSMUST00000175062 Gm23967 miRNA Interval_105801 chr3 89396371 89396813 + 0 NA intron (ENSMUSG00000074466.12, intron 1 of 1) antisense-intron (ENSMUSG00000074466.12, intron 1 of 1) 596 ENSMUSG00000074466.12 ENSMUSG00000074466 ENSMUST00000153969 Gm15417 antisense Interval_76656 chr17 83224288 83225136 + 0 NA TTS (ENSMUSG00000024247.14) protein_coding-TTS (ENSMUSG00000024247.14) 9420 ENSMUSG00000024247.14 ENSMUSG00000024247 ENSMUST00000168118 Pkdcc protein_coding Interval_71750 chr17 25854069 25854335 + 0 NA promoter-TSS (ENSMUSG00000073434.12) protein_coding-promoter-TSS (ENSMUSG00000073434.12) -7621 ENSMUSG00000073434.12 ENSMUSG00000073434 ENSMUST00000176678 Wdr90 protein_coding Interval_67804 chr16 57301537 57301961 + 0 NA TTS (ENSMUSG00000022748.8) protein_coding-TTS (ENSMUSG00000022748.8) -8898 ENSMUSG00000022753.15 ENSMUSG00000022753 ENSMUST00000120112 Tmem30c protein_coding Interval_23847 chr11 27074366 27074632 + 0 NA Intergenic Intergenic -10627 ENSMUSG00000084588.1 ENSMUSG00000084588 ENSMUST00000122639 n-R5s68 rRNA Interval_79010 chr18 23916974 23917527 + 0 NA Intergenic Intergenic -26647 ENSMUSG00000117504.1 ENSMUSG00000117504 ENSMUST00000235052 Gm46611 processed_pseudogene Interval_165856 chr9 53838430 53839042 + 0 NA Intergenic Intergenic -11428 ENSMUSG00000042045.6 ENSMUSG00000042045 ENSMUST00000048485 Sln protein_coding Interval_7236 chr1 128102384 128103840 + 0 NA promoter-TSS (ENSMUSG00000056211.13) protein_coding-promoter-TSS (ENSMUSG00000056211.13) -1642 ENSMUSG00000103999.1 ENSMUSG00000103999 ENSMUST00000193284 Gm38026 TEC Interval_112849 chr4 45498949 45500722 + 0 NA TTS (ENSMUSG00000088892.1) miRNA-TTS (ENSMUSG00000088892.1) 717 ENSMUSG00000088892.1 ENSMUSG00000088892 ENSMUST00000158267 Gm22518 miRNA Interval_126294 chr5 86187042 86187927 + 0 NA intron (ENSMUSG00000029255.8, intron 1 of 1) protein_coding-intron (ENSMUSG00000029255.8, intron 1 of 2) 10417 ENSMUSG00000029255.8 ENSMUSG00000029255 ENSMUST00000094654 Gnrhr protein_coding Interval_31765 chr11 102714368 102716426 + 0 NA Intergenic Intergenic 16666 ENSMUSG00000084375.1 ENSMUSG00000084375 ENSMUST00000120601 Gm11637 processed_pseudogene Interval_93966 chr2 80273889 80274153 + 0 NA Intergenic Intergenic -18451 ENSMUSG00000050114.7 ENSMUSG00000050114 ENSMUST00000057072 Prdx6b protein_coding Interval_59650 chr15 57551987 57552539 + 0 NA Intergenic Intergenic -63392 ENSMUSG00000115629.1 ENSMUSG00000115629 ENSMUST00000227877 Gm49235 processed_pseudogene Interval_146049 chr7 43488812 43490616 + 0 NA intron (ENSMUSG00000013367.5, intron 1 of 7) protein_coding-intron (ENSMUSG00000013367.5, intron 1 of 7) -11481 ENSMUSG00000013367.5 ENSMUSG00000013367 ENSMUST00000206336 Iglon5 protein_coding Interval_24561 chr11 34459406 34459682 + 0 NA intron (ENSMUSG00000020143.15, intron 26 of 26) protein_coding-intron (ENSMUSG00000020143.15, intron 26 of 51) 144786 ENSMUSG00000069911.11 ENSMUSG00000069911 ENSMUST00000093192 Insyn2b protein_coding Interval_81386 chr18 60187831 60188088 + 0 NA Intergenic Intergenic 4748 ENSMUSG00000118538.1 ENSMUSG00000118538 ENSMUST00000238950 AC108942.1 unprocessed_pseudogene Interval_121600 chr5 3796996 3797667 + 0 NA intron (ENSMUSG00000040351.11, intron 1 of 5) protein_coding-intron (ENSMUSG00000040351.11, intron 1 of 19) -1841 ENSMUSG00000040351.11 ENSMUSG00000040351 ENSMUST00000199763 Ankib1 protein_coding Interval_114606 chr4 83077882 83078741 + 0 NA promoter-TSS (ENSMUSG00000089409.1) snoRNA-promoter-TSS (ENSMUSG00000089409.1) -200 ENSMUSG00000089409.1 ENSMUSG00000089409 ENSMUST00000158784 Gm24884 snoRNA Interval_54245 chr14 66844406 66845046 + 0 NA intron (ENSMUSG00000022048.8, intron 3 of 13) protein_coding-intron (ENSMUSG00000022048.8, intron 3 of 13) 23962 ENSMUSG00000022048.8 ENSMUSG00000022048 ENSMUST00000022629 Dpysl2 protein_coding Interval_161017 chr8 116942895 116944362 + 0 NA exon (ENSMUSG00000047388.10, exon 1 of 4) protein_coding-exon (ENSMUSG00000047388.10, exon 1 of 4) 235 ENSMUSG00000047388.10 ENSMUSG00000047388 ENSMUST00000109099 Atmin protein_coding Interval_118081 chr4 128849085 128850212 + 0 NA intron (ENSMUSG00000085701.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000085701.1, intron 1 of 1) 3451 ENSMUSG00000085701.1 ENSMUSG00000085701 ENSMUST00000138291 Gm12968 lincRNA Interval_110188 chr3 154081567 154081740 + 0 NA intron (ENSMUSG00000028360.10, intron 1 of 21) protein_coding-intron (ENSMUSG00000028360.10, intron 1 of 21) 34730 ENSMUSG00000028360.10 ENSMUSG00000028360 ENSMUST00000144677 Slc44a5 protein_coding Interval_156308 chr8 47306072 47306589 + 0 NA intron (ENSMUSG00000038143.16, intron 7 of 7) protein_coding-intron (ENSMUSG00000038143.16, intron 1 of 4) -79164 ENSMUSG00000109606.1 ENSMUSG00000109606 ENSMUST00000211539 Gm45537 TEC Interval_115560 chr4 100793018 100794100 + 0 NA intron (ENSMUSG00000028532.14, intron 1 of 26) protein_coding-intron (ENSMUSG00000028532.14, intron 1 of 26) -201151 ENSMUSG00000028532.14 ENSMUSG00000028532 ENSMUST00000136430 Cachd1 protein_coding Interval_7861 chr1 134216391 134217618 + 0 NA intron (ENSMUSG00000042429.8, intron 2 of 2) protein_coding-intron (ENSMUSG00000042429.8, intron 1 of 1) 18360 ENSMUSG00000042429.8 ENSMUSG00000042429 ENSMUST00000187631 Adora1 protein_coding Interval_91286 chr2 37422246 37423339 + 0 NA promoter-TSS (ENSMUSG00000075376.10) protein_coding-promoter-TSS (ENSMUSG00000075376.10) 20343 ENSMUSG00000050714.9 ENSMUSG00000050714 ENSMUST00000203522 Zbtb26 protein_coding Interval_43591 chr13 33942140 33943041 + 0 NA intron (ENSMUSG00000085457.3, intron 1 of 4) protein_coding-intron (ENSMUSG00000060147.15, intron 2 of 7) 6558 ENSMUSG00000085457.3 ENSMUSG00000085457 ENSMUST00000181800 1110046J04Rik antisense Interval_75622 chr17 69438856 69440128 + 0 NA promoter-TSS (ENSMUSG00000096988.1) lincRNA-promoter-TSS (ENSMUSG00000096988.1) -188 ENSMUSG00000096988.1 ENSMUSG00000096988 ENSMUST00000181032 A930029G22Rik lincRNA Interval_23461 chr11 22762419 22762815 + 0 NA intron (ENSMUSG00000051650.11, intron 5 of 5) protein_coding-intron (ENSMUSG00000051650.11, intron 5 of 5) -2592 ENSMUSG00000084081.3 ENSMUSG00000084081 ENSMUST00000117244 Gm12057 processed_pseudogene Interval_50880 chr14 20414613 20414947 + 0 NA intron (ENSMUSG00000039543.16, intron 15 of 27) protein_coding-intron (ENSMUSG00000039543.16, intron 15 of 27) 15208 ENSMUSG00000039543.16 ENSMUSG00000039543 ENSMUST00000143940 Cfap70 protein_coding Interval_56218 chr14 113315881 113316118 + 0 NA exon (ENSMUSG00000058126.7, exon 1 of 1) protein_coding-exon (ENSMUSG00000058126.7, exon 1 of 1) 1391 ENSMUSG00000058126.7 ENSMUSG00000058126 ENSMUST00000072359 Tpm3-rs7 protein_coding Interval_135749 chr6 46618124 46618752 + 0 NA intron (ENSMUSG00000039419.17, intron 13 of 23) protein_coding-intron (ENSMUSG00000039419.17, intron 13 of 23) 19844 ENSMUSG00000107725.1 ENSMUSG00000107725 ENSMUST00000204389 Gm18484 processed_pseudogene Interval_89965 chr2 26891571 26892858 + 0 NA promoter-TSS (ENSMUSG00000036160.13) protein_coding-promoter-TSS (ENSMUSG00000036160.13) 10576 ENSMUSG00000036160.13 ENSMUSG00000036160 ENSMUST00000127691 Surf6 protein_coding Interval_45595 chr13 56142763 56143759 + 0 NA Intergenic Intergenic -6900 ENSMUSG00000015937.15 ENSMUSG00000015937 ENSMUST00000154564 Macroh2a1 protein_coding Interval_8039 chr1 135367963 135369364 + 0 NA TTS (ENSMUSG00000048096.7) protein_coding-TTS (ENSMUSG00000048096.7) 4787 ENSMUSG00000041889.7 ENSMUSG00000041889 ENSMUST00000159181 Shisa4 protein_coding Interval_30419 chr11 94257163 94257389 + 0 NA Intergenic Intergenic -11271 ENSMUSG00000044177.4 ENSMUSG00000044177 ENSMUST00000131352 Wfikkn2 protein_coding Interval_1406 chr1 21387220 21387465 + 0 NA TTS (ENSMUSG00000085079.3) protein_coding-TTS (ENSMUSG00000085079.3) -3564 ENSMUSG00000085679.2 ENSMUSG00000085679 ENSMUST00000126985 Gm16328 processed_pseudogene Interval_9217 chr1 155140219 155140627 + 0 NA intron (ENSMUSG00000026471.14, intron 1 of 1) protein_coding-intron (ENSMUSG00000026471.14, intron 1 of 5) 6391 ENSMUSG00000026471.14 ENSMUSG00000026471 ENSMUST00000195579 Mr1 protein_coding Interval_97040 chr2 130731611 130731813 + 0 NA promoter-TSS (ENSMUSG00000027309.18) protein_coding-promoter-TSS (ENSMUSG00000027309.18) 7788 ENSMUSG00000027309.18 ENSMUSG00000027309 ENSMUST00000146975 4930402H24Rik protein_coding Interval_150248 chr7 108965935 108967427 + 0 NA intron (ENSMUSG00000031028.14, intron 1 of 3) protein_coding-intron (ENSMUSG00000031028.14, intron 1 of 3) 16024 ENSMUSG00000031028.14 ENSMUSG00000031028 ENSMUST00000147943 Tub protein_coding Interval_118735 chr4 133447619 133450516 + 0 NA Intergenic Intergenic -31065 ENSMUSG00000046694.6 ENSMUSG00000046694 ENSMUST00000051676 Tent5b protein_coding Interval_5898 chr1 93023415 93023744 + 0 NA TTS (ENSMUSG00000014602.15) protein_coding-TTS (ENSMUSG00000014602.15) 3626 ENSMUSG00000014602.15 ENSMUSG00000014602 ENSMUST00000186861 Kif1a protein_coding Interval_54871 chr14 75923077 75923560 + 0 NA intron (ENSMUSG00000067995.4, intron 5 of 7) protein_coding-intron (ENSMUSG00000067995.4, intron 5 of 7) -31691 ENSMUSG00000046523.5 ENSMUSG00000046523 ENSMUST00000050120 Kctd4 protein_coding Interval_50770 chr14 19705520 19707274 + 0 NA Intergenic Intergenic -9188 ENSMUSG00000114199.1 ENSMUSG00000114199 ENSMUST00000223660 Gm49341 processed_pseudogene Interval_72067 chr17 27816403 27816599 + 0 NA intron (ENSMUSG00000056692.13, intron 1 of 4) protein_coding-intron (ENSMUSG00000056692.13, intron 1 of 3) 4065 ENSMUSG00000056692.13 ENSMUSG00000056692 ENSMUST00000233035 Ilrun protein_coding Interval_24688 chr11 35927432 35927745 + 0 NA intron (ENSMUSG00000018849.6, intron 1 of 22) protein_coding-intron (ENSMUSG00000018849.6, intron 1 of 22) -68466 ENSMUSG00000081571.1 ENSMUSG00000081571 ENSMUST00000117261 Gm12125 processed_pseudogene Interval_116549 chr4 115476031 115476298 + 0 NA Intergenic Intergenic -4636 ENSMUSG00000086724.1 ENSMUSG00000086724 ENSMUST00000136112 Gm12833 processed_pseudogene Interval_89539 chr2 22165463 22165843 + 0 NA Intergenic Intergenic -75404 ENSMUSG00000025716.14 ENSMUSG00000025716 ENSMUST00000149423 Myo3a protein_coding Interval_94172 chr2 84837150 84840897 + 0 NA promoter-TSS (ENSMUSG00000027075.16) protein_coding-promoter-TSS (ENSMUSG00000027075.16) -372 ENSMUSG00000027075.16 ENSMUSG00000027075 ENSMUST00000111625 Slc43a1 protein_coding Interval_167273 chr9 66951308 66951956 + 0 NA Intergenic Intergenic 5466 ENSMUSG00000036781.13 ENSMUSG00000036781 ENSMUST00000123931 Rps27l protein_coding Interval_140931 chr6 122810470 122811978 + 0 NA promoter-TSS (ENSMUSG00000107868.1) TEC-promoter-TSS (ENSMUSG00000107868.1) 54 ENSMUSG00000107868.1 ENSMUSG00000107868 ENSMUST00000204407 Gm5112 TEC Interval_115791 chr4 104396189 104396695 + 0 NA intron (ENSMUSG00000028519.16, intron 1 of 14) protein_coding-intron (ENSMUSG00000028519.16, intron 3 of 9) -208854 ENSMUSG00000028519.16 ENSMUSG00000028519 ENSMUST00000149672 Dab1 protein_coding Interval_112929 chr4 46132250 46132476 + 0 NA promoter-TSS (ENSMUSG00000035495.15) protein_coding-promoter-TSS (ENSMUSG00000035495.15) 6050 ENSMUSG00000035495.15 ENSMUSG00000035495 ENSMUST00000156021 Tstd2 protein_coding Interval_170546 chr9 108616851 108617166 + 0 NA intron (ENSMUSG00000064145.12, intron 3 of 4) protein_coding-intron (ENSMUSG00000064145.12, intron 5 of 15) 13136 ENSMUSG00000064145.12 ENSMUSG00000064145 ENSMUST00000195623 Arih2 protein_coding Interval_142253 chr6 140001131 140001406 + 0 NA intron (ENSMUSG00000030230.15, intron 11 of 13) protein_coding-intron (ENSMUSG00000030230.15, intron 11 of 13) 32264 ENSMUSG00000108251.1 ENSMUSG00000108251 ENSMUST00000204787 Gm44112 processed_pseudogene Interval_104960 chr3 79286179 79287875 + 0 NA promoter-TSS (ENSMUSG00000102545.1) lincRNA-promoter-TSS (ENSMUSG00000102545.1) -365 ENSMUSG00000102545.1 ENSMUSG00000102545 ENSMUST00000192562 6430573P05Rik lincRNA Interval_150496 chr7 111191333 111191895 + 0 NA Intergenic Intergenic -68930 ENSMUSG00000110424.1 ENSMUSG00000110424 ENSMUST00000210340 1700012D14Rik processed_transcript Interval_6232 chr1 103372727 103373650 + 0 NA intron (ENSMUSG00000099469.1, intron 2 of 4) unprocessed_pseudogene-intron (ENSMUSG00000099469.1, intron 2 of 4) 9202 ENSMUSG00000099469.1 ENSMUSG00000099469 ENSMUST00000190357 Gm29141 unprocessed_pseudogene Interval_172766 chrX 48448246 48448485 + 0 NA intron (ENSMUSG00000031103.12, intron 1 of 7) protein_coding-intron (ENSMUSG00000031103.12, intron 1 of 8) 14767 ENSMUSG00000031103.12 ENSMUSG00000031103 ENSMUST00000140486 Elf4 protein_coding Interval_169458 chr9 97620986 97621878 + 0 NA intron (ENSMUSG00000032452.12, intron 2 of 16) protein_coding-intron (ENSMUSG00000032452.12, intron 2 of 17) -181805 ENSMUSG00000077208.1 ENSMUSG00000077208 ENSMUST00000104020 Gm25607 snoRNA Interval_137764 chr6 82212611 82212989 + 0 NA Intergenic Intergenic -29374 ENSMUSG00000108224.1 ENSMUSG00000108224 ENSMUST00000204563 Gm31861 processed_pseudogene Interval_59044 chr15 42061909 42062158 + 0 NA intron (ENSMUSG00000115986.1, intron 2 of 2) lincRNA-intron (ENSMUSG00000115986.1, intron 2 of 2) 5513 ENSMUSG00000115986.1 ENSMUSG00000115986 ENSMUST00000229653 Gm49439 lincRNA Interval_28078 chr11 72678652 72679046 + 0 NA intron (ENSMUSG00000020794.13, intron 5 of 6) protein_coding-intron (ENSMUSG00000020794.13, intron 4 of 5) -11157 ENSMUSG00000020790.14 ENSMUSG00000020790 ENSMUST00000132889 Ankfy1 protein_coding Interval_152994 chr7 140670588 140671124 + 0 NA exon (ENSMUSG00000059136.4, exon 3 of 3) protein_coding-exon (ENSMUSG00000059136.4, exon 3 of 3) -1119 ENSMUSG00000109892.1 ENSMUSG00000109892 ENSMUST00000210499 Olfr540-ps1 unprocessed_pseudogene Interval_105263 chr3 84333680 84334807 + 0 NA Intergenic Intergenic -27366 ENSMUSG00000027993.16 ENSMUSG00000027993 ENSMUST00000197845 Trim2 protein_coding Interval_129670 chr5 121636745 121636948 + 0 NA intron (ENSMUSG00000029456.12, intron 9 of 16) protein_coding-intron (ENSMUSG00000029456.12, intron 10 of 20) -4067 ENSMUSG00000029456.12 ENSMUSG00000029456 ENSMUST00000137231 Acad10 protein_coding Interval_140395 chr6 117827671 117828798 + 0 NA Intergenic Intergenic -13020 ENSMUSG00000059689.15 ENSMUSG00000059689 ENSMUST00000132644 Zfp637 protein_coding Interval_127463 chr5 104108252 104110481 + 0 NA promoter-TSS (ENSMUSG00000097877.2) antisense-promoter-TSS (ENSMUSG00000097877.2) 75 ENSMUSG00000097877.2 ENSMUSG00000097877 ENSMUST00000181506 Gm26703 antisense Interval_48312 chr13 98024926 98025892 + 0 NA intron (ENSMUSG00000021662.11, intron 9 of 34) protein_coding-intron (ENSMUSG00000021662.11, intron 9 of 35) -8992 ENSMUSG00000021662.11 ENSMUSG00000021662 ENSMUST00000224866 Arhgef28 protein_coding Interval_102666 chr3 29189866 29191409 + 0 NA intron (ENSMUSG00000063600.14, intron 4 of 5) protein_coding-intron (ENSMUSG00000063600.14, intron 4 of 12) 15799 ENSMUSG00000103992.1 ENSMUSG00000103992 ENSMUST00000192669 Gm38029 TEC Interval_54637 chr14 72579255 72579518 + 0 NA intron (ENSMUSG00000033487.14, intron 3 of 3) protein_coding-intron (ENSMUSG00000033487.14, intron 7 of 25) -10366 ENSMUSG00000090216.1 ENSMUSG00000090216 ENSMUST00000160445 Gm16549 antisense Interval_42032 chr13 6642464 6643342 + 0 NA intron (ENSMUSG00000021196.14, intron 1 of 15) protein_coding-intron (ENSMUSG00000021196.14, intron 1 of 21) 19991 ENSMUSG00000068324.5 ENSMUSG00000068324 ENSMUST00000089635 Gm10029 processed_pseudogene Interval_111297 chr4 17826927 17827408 + 0 NA Intergenic Intergenic -25726 ENSMUSG00000028226.15 ENSMUSG00000028226 ENSMUST00000139418 Mmp16 protein_coding Interval_41706 chr12 117989077 117989644 + 0 NA intron (ENSMUSG00000018581.15, intron 23 of 51) protein_coding-intron (ENSMUSG00000018581.15, intron 55 of 81) 70943 ENSMUSG00000018581.15 ENSMUSG00000018581 ENSMUST00000176239 Dnah11 protein_coding Interval_172595 chrX 37198463 37199133 + 0 NA Intergenic Intergenic 7553 ENSMUSG00000036537.6 ENSMUSG00000036537 ENSMUST00000046433 Rnf113a1 protein_coding Interval_145737 chr7 37945914 37946430 + 0 NA Intergenic Intergenic 77379 ENSMUSG00000030421.9 ENSMUSG00000030421 ENSMUST00000206169 Uri1 protein_coding Interval_45519 chr13 55611310 55611725 + 0 NA Intergenic Intergenic -6734 ENSMUSG00000086506.1 ENSMUSG00000086506 ENSMUST00000138992 Gm15911 antisense Interval_136086 chr6 50596284 50597282 + 0 NA promoter-TSS (ENSMUSG00000029828.4) protein_coding-promoter-TSS (ENSMUSG00000029828.4) -151 ENSMUSG00000029828.4 ENSMUSG00000029828 ENSMUST00000031852 4921507P07Rik protein_coding Interval_163262 chr9 20289086 20289985 + 0 NA Intergenic Intergenic 7184 ENSMUSG00000059623.6 ENSMUSG00000059623 ENSMUST00000212983 Olfr39 protein_coding Interval_121648 chr5 4303247 4304483 + 0 NA Intergenic Intergenic 111498 ENSMUSG00000053178.5 ENSMUSG00000053178 ENSMUST00000177258 Mterf1b protein_coding Interval_98055 chr2 147278403 147278910 + 0 NA intron (ENSMUSG00000086509.2, intron 1 of 5) antisense-intron (ENSMUSG00000086509.2, intron 1 of 5) 2428 ENSMUSG00000081971.1 ENSMUSG00000081971 ENSMUST00000119242 Gm14115 processed_pseudogene Interval_21122 chr10 126691214 126691916 + 0 NA Intergenic Intergenic 18826 ENSMUSG00000098756.1 ENSMUSG00000098756 ENSMUST00000184232 Mir378d miRNA Interval_90301 chr2 29665428 29667186 + 0 NA intron (ENSMUSG00000039844.20, intron 1 of 23) protein_coding-intron (ENSMUSG00000039844.20, intron 1 of 25) 22492 ENSMUSG00000039844.20 ENSMUSG00000039844 ENSMUST00000123953 Rapgef1 protein_coding Interval_133982 chr6 17305831 17308062 + 0 NA promoter-TSS (ENSMUSG00000007655.16) protein_coding-promoter-TSS (ENSMUSG00000007655.16) 535 ENSMUSG00000007655.16 ENSMUSG00000007655 ENSMUST00000133065 Cav1 protein_coding Interval_119506 chr4 138005501 138006638 + 0 NA intron (ENSMUSG00000028760.16, intron 2 of 8) protein_coding-intron (ENSMUSG00000028760.16, intron 2 of 9) 12556 ENSMUSG00000028760.16 ENSMUSG00000028760 ENSMUST00000148074 Eif4g3 protein_coding Interval_42031 chr13 6638484 6638816 + 0 NA intron (ENSMUSG00000021196.14, intron 1 of 15) protein_coding-intron (ENSMUSG00000021196.14, intron 1 of 21) 24244 ENSMUSG00000068324.5 ENSMUSG00000068324 ENSMUST00000089635 Gm10029 processed_pseudogene Interval_9755 chr1 161769387 161770470 + 0 NA Intergenic Intergenic 18430 ENSMUSG00000000817.10 ENSMUSG00000000817 ENSMUST00000193648 Fasl protein_coding Interval_107157 chr3 104014305 104015417 + 0 NA exon (ENSMUSG00000052539.15, exon 22 of 22) protein_coding-exon (ENSMUSG00000052539.15, exon 22 of 22) 43280 ENSMUSG00000104721.1 ENSMUSG00000104721 ENSMUST00000199859 Gm42696 sense_intronic Interval_100329 chr2 168428523 168429870 + 0 NA Intergenic Intergenic -10622 ENSMUSG00000082239.1 ENSMUSG00000082239 ENSMUST00000119539 Gm14234 processed_pseudogene Interval_16738 chr10 67804183 67804526 + 0 NA intron (ENSMUSG00000116971.1, intron 2 of 5) lincRNA-intron (ENSMUSG00000116971.1, intron 2 of 5) -11152 ENSMUSG00000111956.1 ENSMUSG00000111956 ENSMUST00000219270 Gm29774 processed_pseudogene Interval_58823 chr15 38332455 38332751 + 0 NA intron (ENSMUSG00000115456.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000115456.1, intron 1 of 2) 20310 ENSMUSG00000115456.1 ENSMUSG00000115456 ENSMUST00000227097 Gm35248 lincRNA Interval_155415 chr8 33433750 33435287 + 0 NA Intergenic Intergenic 48193 ENSMUSG00000049184.6 ENSMUSG00000049184 ENSMUST00000078058 Purg protein_coding Interval_130491 chr5 128329696 128331021 + 0 NA intron (ENSMUSG00000034310.8, intron 1 of 8) protein_coding-intron (ENSMUSG00000034310.8, intron 1 of 8) -6419 ENSMUSG00000105857.1 ENSMUSG00000105857 ENSMUST00000198962 Gm42817 antisense Interval_103559 chr3 49409633 49410143 + 0 NA Intergenic Intergenic -27142 ENSMUSG00000104309.1 ENSMUSG00000104309 ENSMUST00000193146 Gm5846 processed_pseudogene Interval_169095 chr9 92274310 92276545 + 0 NA promoter-TSS (ENSMUSG00000032372.14) protein_coding-promoter-TSS (ENSMUSG00000032372.14) -175 ENSMUSG00000032372.14 ENSMUSG00000032372 ENSMUST00000156772 Plscr2 protein_coding Interval_92439 chr2 59733111 59733637 + 0 NA intron (ENSMUSG00000035168.16, intron 3 of 25) protein_coding-intron (ENSMUSG00000035168.16, intron 4 of 26) -72694 ENSMUSG00000035168.16 ENSMUSG00000035168 ENSMUST00000147650 Tanc1 protein_coding Interval_116411 chr4 111626356 111627121 + 0 NA intron (ENSMUSG00000061298.14, intron 3 of 3) protein_coding-intron (ENSMUSG00000061298.14, intron 11 of 12) 60043 ENSMUSG00000061298.14 ENSMUSG00000061298 ENSMUST00000142460 Agbl4 protein_coding Interval_98625 chr2 153632072 153633550 + 0 NA promoter-TSS (ENSMUSG00000056941.17) protein_coding-promoter-TSS (ENSMUSG00000056941.17) -80 ENSMUSG00000056941.17 ENSMUSG00000056941 ENSMUST00000109782 Commd7 protein_coding Interval_15840 chr10 58336200 58336447 + 0 NA intron (ENSMUSG00000019920.18, intron 1 of 9) protein_coding-intron (ENSMUSG00000019920.18, intron 1 of 9) 13281 ENSMUSG00000070214.1 ENSMUSG00000070214 ENSMUST00000093703 Gm23058 snRNA Interval_20635 chr10 119803205 119804440 + 0 NA intron (ENSMUSG00000034813.18, intron 1 of 3) protein_coding-intron (ENSMUSG00000034813.18, intron 1 of 22) -42123 ENSMUSG00000084764.1 ENSMUSG00000084764 ENSMUST00000153898 Grip1os2 antisense Interval_36213 chr12 39621404 39622323 + 0 NA TTS (ENSMUSG00000077269.1) snoRNA-TTS (ENSMUSG00000077269.1) 448 ENSMUSG00000077269.1 ENSMUSG00000077269 ENSMUST00000104081 Gm24434 snoRNA Interval_115128 chr4 91255755 91256404 + 0 NA intron (ENSMUSG00000008489.18, intron 5 of 6) protein_coding-intron (ENSMUSG00000008489.18, intron 5 of 6) 99397 ENSMUSG00000081876.1 ENSMUSG00000081876 ENSMUST00000119935 Gm12644 processed_pseudogene Interval_123728 chr5 34967915 34969005 + 0 NA intron (ENSMUSG00000029101.16, intron 2 of 4) protein_coding-intron (ENSMUSG00000029101.16, intron 2 of 16) -45860 ENSMUSG00000029101.16 ENSMUSG00000029101 ENSMUST00000150139 Rgs12 protein_coding Interval_40654 chr12 106478217 106478707 + 0 NA Intergenic Intergenic 19312 ENSMUSG00000091762.1 ENSMUSG00000091762 ENSMUST00000167139 Gm3191 processed_pseudogene Interval_171967 chr9 123020585 123022143 + 0 NA promoter-TSS (ENSMUSG00000066233.6) protein_coding-promoter-TSS (ENSMUSG00000066233.6) -54 ENSMUSG00000111789.1 ENSMUSG00000111789 ENSMUST00000217036 Gm49323 processed_transcript Interval_75635 chr17 69577982 69578209 + 0 NA Intergenic Intergenic 7689 ENSMUSG00000117071.1 ENSMUSG00000117071 ENSMUST00000233261 Gm9598 processed_pseudogene Interval_39257 chr12 86241390 86242490 + 0 NA promoter-TSS (ENSMUSG00000021254.9) protein_coding-promoter-TSS (ENSMUSG00000021254.9) -19736 ENSMUSG00000021254.9 ENSMUSG00000021254 ENSMUST00000222299 Gpatch2l protein_coding Interval_84849 chr19 17463303 17464161 + 0 NA intron (ENSMUSG00000024713.16, intron 29 of 37) protein_coding-intron (ENSMUSG00000024713.16, intron 29 of 37) 66295 ENSMUSG00000024712.9 ENSMUSG00000024712 ENSMUST00000146171 Rfk protein_coding Interval_139564 chr6 101197566 101199093 + 0 NA promoter-TSS (ENSMUSG00000097834.2) antisense-promoter-TSS (ENSMUSG00000097834.2) -329 ENSMUSG00000097834.2 ENSMUSG00000097834 ENSMUST00000204781 Gm26911 antisense Interval_3544 chr1 59465260 59466097 + 0 NA Intergenic Intergenic -16176 ENSMUSG00000104502.1 ENSMUSG00000104502 ENSMUST00000195013 Gm37737 TEC Interval_153835 chr8 9413054 9413579 + 0 NA intron (ENSMUSG00000079157.4, intron 1 of 3) protein_coding-intron (ENSMUSG00000079157.4, intron 1 of 2) -37990 ENSMUSG00000109385.1 ENSMUSG00000109385 ENSMUST00000208080 Gm44518 TEC Interval_117595 chr4 124905511 124907326 + 0 NA intron (ENSMUSG00000028876.7, intron 6 of 14) protein_coding-intron (ENSMUSG00000028876.7, intron 6 of 14) 7016 ENSMUSG00000028876.7 ENSMUSG00000028876 ENSMUST00000151791 Epha10 protein_coding Interval_107627 chr3 108977084 108978029 + 0 NA intron (ENSMUSG00000040339.10, intron 10 of 10) protein_coding-intron (ENSMUSG00000040339.10, intron 10 of 10) -22468 ENSMUSG00000106108.1 ENSMUSG00000106108 ENSMUST00000197612 Gm43221 antisense Interval_140030 chr6 113530801 113532111 + 0 NA promoter-TSS (ENSMUSG00000034023.16) protein_coding-promoter-TSS (ENSMUSG00000034023.16) 162 ENSMUSG00000030286.6 ENSMUSG00000030286 ENSMUST00000203526 Emc3 protein_coding Interval_63255 chr15 99949066 99949312 + 0 NA intron (ENSMUSG00000045350.15, intron 3 of 7) protein_coding-intron (ENSMUSG00000045350.15, intron 3 of 7) -11748 ENSMUSG00000077443.1 ENSMUSG00000077443 ENSMUST00000104255 Gm23133 snRNA Interval_121046 chr4 152418285 152420132 + 0 NA promoter-TSS (ENSMUSG00000028931.12) protein_coding-promoter-TSS (ENSMUSG00000028931.12) 8408 ENSMUSG00000090057.1 ENSMUSG00000090057 ENSMUST00000161416 Gm16333 antisense Interval_123041 chr5 29131809 29132559 + 0 NA Intergenic Intergenic -64403 ENSMUSG00000029130.12 ENSMUSG00000029130 ENSMUST00000163050 Rnf32 protein_coding Interval_141026 chr6 124458722 124459017 + 0 NA promoter-TSS (ENSMUSG00000008153.12) protein_coding-promoter-TSS (ENSMUSG00000008153.12) -7896 ENSMUSG00000118414.1 ENSMUSG00000118414 ENSMUST00000238756 Gm50463 unitary_pseudogene Interval_66568 chr16 35173142 35173391 + 0 NA intron (ENSMUSG00000022840.9, intron 1 of 20) protein_coding-intron (ENSMUSG00000022840.9, intron 1 of 20) 61657 ENSMUSG00000084581.1 ENSMUSG00000084581 ENSMUST00000122632 Gm25179 snRNA Interval_4953 chr1 82906029 82907292 + 0 NA Intergenic Intergenic -6665 ENSMUSG00000113880.1 ENSMUSG00000113880 ENSMUST00000220768 A030005L19Rik protein_coding Interval_147254 chr7 65155650 65158250 + 0 NA promoter-TSS (ENSMUSG00000030518.17) protein_coding-promoter-TSS (ENSMUSG00000030518.17) -13692 ENSMUSG00000108745.1 ENSMUSG00000108745 ENSMUST00000205552 Gm17908 processed_pseudogene Interval_59098 chr15 43729724 43730167 + 0 NA Intergenic Intergenic -78516 ENSMUSG00000115407.1 ENSMUSG00000115407 ENSMUST00000226778 Gm2140 processed_pseudogene Interval_171173 chr9 114963870 114964347 + 0 NA Intergenic Intergenic 18631 ENSMUSG00000050621.7 ENSMUSG00000050621 ENSMUST00000053150 Rps27rt protein_coding Interval_124753 chr5 53670487 53672653 + 0 NA Intergenic Intergenic 32938 ENSMUSG00000039191.12 ENSMUSG00000039191 ENSMUST00000202092 Rbpj protein_coding Interval_77479 chr17 89691119 89691473 + 0 NA Intergenic Intergenic 61230 ENSMUSG00000117511.1 ENSMUSG00000117511 ENSMUST00000234973 Gm50061 lincRNA Interval_128758 chr5 115118565 115119878 + 0 NA promoter-TSS (ENSMUSG00000029545.13) protein_coding-promoter-TSS (ENSMUSG00000029545.13) 89 ENSMUSG00000029545.13 ENSMUSG00000029545 ENSMUST00000141142 Acads protein_coding Interval_144277 chr7 24218188 24218659 + 0 NA Intergenic Intergenic 5289 ENSMUSG00000108361.1 ENSMUSG00000108361 ENSMUST00000205272 Gm44796 processed_transcript Interval_105869 chr3 89833277 89833874 + 0 NA intron (ENSMUSG00000046280.9, intron 1 of 5) protein_coding-intron (ENSMUSG00000046280.9, intron 1 of 5) -4314 ENSMUSG00000046280.9 ENSMUSG00000046280 ENSMUST00000197454 She protein_coding Interval_96162 chr2 120170727 120171151 + 0 NA intron (ENSMUSG00000050211.14, intron 14 of 16) protein_coding-intron (ENSMUSG00000050211.14, intron 17 of 19) -33379 ENSMUSG00000027293.13 ENSMUSG00000027293 ENSMUST00000148073 Ehd4 protein_coding Interval_89164 chr2 17783018 17783535 + 0 NA Intergenic Intergenic 14708 ENSMUSG00000081851.1 ENSMUSG00000081851 ENSMUST00000120245 Gm13323 processed_pseudogene Interval_30204 chr11 90551614 90551958 + 0 NA intron (ENSMUSG00000020546.14, intron 12 of 17) protein_coding-intron (ENSMUSG00000020546.14, intron 12 of 15) -12640 ENSMUSG00000081043.1 ENSMUSG00000081043 ENSMUST00000119669 Gm11512 processed_pseudogene Interval_151806 chr7 126776488 126777319 + 0 NA promoter-TSS (ENSMUSG00000042675.15) protein_coding-promoter-TSS (ENSMUSG00000042675.15) -96 ENSMUSG00000042675.15 ENSMUSG00000042675 ENSMUST00000143078 Ypel3 protein_coding Interval_138544 chr6 89076377 89077108 + 0 NA intron (ENSMUSG00000055403.13, intron 1 of 2) lincRNA-intron (ENSMUSG00000055403.13, intron 1 of 2) -64252 ENSMUSG00000090254.7 ENSMUSG00000090254 ENSMUST00000160361 Gm1965 lincRNA Interval_77135 chr17 86786721 86787009 + 0 NA intron (ENSMUSG00000024140.10, intron 1 of 15) protein_coding-intron (ENSMUSG00000024140.10, intron 1 of 15) 13595 ENSMUSG00000117538.1 ENSMUSG00000117538 ENSMUST00000234482 Gm50008 TEC Interval_62295 chr15 89522872 89524578 + 0 NA promoter-TSS (ENSMUSG00000022623.17) protein_coding-promoter-TSS (ENSMUSG00000022623.17) -48 ENSMUSG00000086602.1 ENSMUSG00000086602 ENSMUST00000155610 Gm15609 lincRNA Interval_8931 chr1 152399683 152401174 + 0 NA intron (ENSMUSG00000032649.14, intron 1 of 13) protein_coding-intron (ENSMUSG00000032649.14, intron 1 of 11) 598 ENSMUSG00000032649.14 ENSMUSG00000032649 ENSMUST00000044311 Colgalt2 protein_coding Interval_106557 chr3 97199338 97200065 + 0 NA Intergenic Intergenic 40605 ENSMUSG00000028093.15 ENSMUSG00000028093 ENSMUST00000198329 Acp6 protein_coding Interval_133248 chr5 150864131 150864404 + 0 NA exon (ENSMUSG00000107047.1, exon 4 of 4) lincRNA-exon (ENSMUSG00000107047.1, exon 4 of 4) 18375 ENSMUSG00000107047.1 ENSMUSG00000107047 ENSMUST00000200887 Gm43298 lincRNA Interval_35507 chr12 24056660 24057046 + 0 NA intron (ENSMUSG00000073158.4, intron 3 of 3) protein_coding-intron (ENSMUSG00000073158.4, intron 3 of 3) -39856 ENSMUSG00000112987.1 ENSMUSG00000112987 ENSMUST00000222563 Gm5954 unprocessed_pseudogene Interval_160804 chr8 112483322 112483672 + 0 NA Intergenic Intergenic 86078 ENSMUSG00000098075.1 ENSMUSG00000098075 ENSMUST00000182027 Gm26994 antisense Interval_100633 chr2 170622876 170623138 + 0 NA Intergenic Intergenic -20990 ENSMUSG00000043583.1 ENSMUSG00000043583 ENSMUST00000062355 4930470P17Rik protein_coding Interval_160048 chr8 106017083 106017660 + 0 NA intron (ENSMUSG00000031901.12, intron 2 of 3) protein_coding-intron (ENSMUSG00000031901.12, intron 2 of 15) -5489 ENSMUSG00000045538.6 ENSMUSG00000045538 ENSMUST00000058579 Ddx28 protein_coding Interval_96904 chr2 129338144 129338708 + 0 NA Intergenic Intergenic -22947 ENSMUSG00000065057.1 ENSMUSG00000065057 ENSMUST00000083123 Gm25703 snRNA Interval_81472 chr18 60977833 60978748 + 0 NA intron (ENSMUSG00000024617.16, intron 4 of 6) protein_coding-intron (ENSMUSG00000024617.16, intron 16 of 18) 20217 ENSMUSG00000098475.1 ENSMUSG00000098475 ENSMUST00000184354 Mir6982 miRNA Interval_55869 chr14 101668358 101668636 + 0 NA TTS (ENSMUSG00000022111.9) protein_coding-TTS (ENSMUSG00000022111.9) 14472 ENSMUSG00000022111.9 ENSMUSG00000022111 ENSMUST00000226340 Uchl3 protein_coding Interval_18220 chr10 83816277 83816994 + 0 NA Intergenic Intergenic -5070 ENSMUSG00000112077.1 ENSMUSG00000112077 ENSMUST00000218819 Gm47245 processed_pseudogene Interval_55197 chr14 79275705 79276976 + 0 NA Intergenic Intergenic 15887 ENSMUSG00000115045.1 ENSMUSG00000115045 ENSMUST00000226573 Gm49028 processed_pseudogene Interval_122493 chr5 23426350 23426943 + 0 NA intron (ENSMUSG00000073147.3, intron 1 of 2) lincRNA-intron (ENSMUSG00000073147.3, intron 1 of 6) 6663 ENSMUSG00000073147.3 ENSMUSG00000073147 ENSMUST00000189045 5031425E22Rik lincRNA Interval_42955 chr13 21906309 21908615 + 0 NA Intergenic Intergenic 4306 ENSMUSG00000081576.1 ENSMUSG00000081576 ENSMUST00000121524 Gm11279 processed_pseudogene Interval_1973 chr1 35256746 35258029 + 0 NA Intergenic Intergenic -78303 ENSMUSG00000077231.1 ENSMUSG00000077231 ENSMUST00000104043 Gm25096 snoRNA Interval_62101 chr15 86663910 86664589 + 0 NA Intergenic Intergenic -40042 ENSMUSG00000116040.1 ENSMUSG00000116040 ENSMUST00000229409 Gm49464 lincRNA Interval_75669 chr17 70440863 70441092 + 0 NA intron (ENSMUSG00000003279.17, intron 1 of 11) protein_coding-intron (ENSMUSG00000003279.17, intron 5 of 14) 314605 ENSMUSG00000097282.1 ENSMUSG00000097282 ENSMUST00000181546 5031415H12Rik antisense Interval_119996 chr4 141291063 141292389 + 0 NA Intergenic Intergenic 13287 ENSMUSG00000085395.1 ENSMUSG00000085395 ENSMUST00000142429 Gm13056 lincRNA Interval_5871 chr1 92849064 92850157 + 0 NA promoter-TSS (ENSMUSG00000065470.1) miRNA-promoter-TSS (ENSMUSG00000065470.1) -768 ENSMUSG00000065470.1 ENSMUSG00000065470 ENSMUST00000083536 Mir149 miRNA Interval_70931 chr17 16156839 16157183 + 0 NA Intergenic Intergenic -6140 ENSMUSG00000116839.1 ENSMUSG00000116839 ENSMUST00000232488 Gm49778 lincRNA Interval_38705 chr12 81266472 81266773 + 0 NA intron (ENSMUSG00000079055.10, intron 2 of 7) protein_coding-intron (ENSMUSG00000079055.10, intron 2 of 7) 38338 ENSMUSG00000098128.1 ENSMUSG00000098128 ENSMUST00000182077 Gm3693 antisense Interval_147871 chr7 74687988 74688368 + 0 NA Intergenic Intergenic -11678 ENSMUSG00000108570.1 ENSMUSG00000108570 ENSMUST00000206241 Gm7726 processed_pseudogene Interval_152795 chr7 137665662 137666179 + 0 NA Intergenic Intergenic 16831 ENSMUSG00000110145.1 ENSMUSG00000110145 ENSMUST00000210825 Gm45683 TEC Interval_72838 chr17 32483137 32483933 + 0 NA TTS (ENSMUSG00000061126.5) protein_coding-TTS (ENSMUSG00000061126.5) -22515 ENSMUSG00000091586.2 ENSMUSG00000091586 ENSMUST00000236129 Cyp4f17 protein_coding Interval_44573 chr13 46273165 46274270 + 0 NA promoter-TSS (ENSMUSG00000063529.3) protein_coding-promoter-TSS (ENSMUSG00000063529.3) -4 ENSMUSG00000063529.3 ENSMUSG00000063529 ENSMUST00000076622 Stmnd1 protein_coding Interval_100999 chr2 174075256 174077504 + 0 NA promoter-TSS (ENSMUSG00000027522.15) protein_coding-promoter-TSS (ENSMUSG00000027522.15) -686 ENSMUSG00000027522.15 ENSMUSG00000027522 ENSMUST00000156054 Stx16 protein_coding Interval_26691 chr11 59749307 59749584 + 0 NA intron (ENSMUSG00000005417.17, intron 5 of 5) protein_coding-intron (ENSMUSG00000005417.17, intron 11 of 22) -9291 ENSMUSG00000086330.7 ENSMUSG00000086330 ENSMUST00000153431 1700007J10Rik processed_transcript Interval_49666 chr13 113868755 113869653 + 0 NA intron (ENSMUSG00000042348.10, intron 1 of 3) protein_coding-intron (ENSMUSG00000042348.10, intron 1 of 4) 74611 ENSMUSG00000042348.10 ENSMUSG00000042348 ENSMUST00000224068 Arl15 protein_coding Interval_140127 chr6 114643369 114643902 + 0 NA intron (ENSMUSG00000030314.16, intron 1 of 16) protein_coding-intron (ENSMUSG00000030314.16, intron 1 of 18) -39649 ENSMUSG00000030314.16 ENSMUSG00000030314 ENSMUST00000182934 Atg7 protein_coding Interval_39268 chr12 86338523 86338695 + 0 NA Intergenic Intergenic -9368 ENSMUSG00000113230.1 ENSMUSG00000113230 ENSMUST00000221001 Gm48101 processed_pseudogene Interval_72342 chr17 29309512 29310456 + 0 NA exon (ENSMUSG00000052712.17, exon 8 of 8) protein_coding-exon (ENSMUSG00000052712.17, exon 8 of 8) 1846 ENSMUSG00000094326.1 ENSMUSG00000094326 ENSMUST00000178657 Gm10045 transcribed_processed_pseudogene Interval_68592 chr16 80129048 80129306 + 0 NA Intergenic Intergenic -8175 ENSMUSG00000088476.1 ENSMUSG00000088476 ENSMUST00000157851 Gm23083 snoRNA Interval_170439 chr9 107995079 107996115 + 0 NA promoter-TSS (ENSMUSG00000032595.10) protein_coding-promoter-TSS (ENSMUSG00000032595.10) 59 ENSMUSG00000093749.1 ENSMUSG00000093749 ENSMUST00000175729 4921523L03Rik antisense Interval_129109 chr5 117455096 117455907 + 0 NA intron (ENSMUSG00000061578.8, intron 1 of 20) protein_coding-intron (ENSMUSG00000061578.8, intron 1 of 3) 41501 ENSMUSG00000061578.8 ENSMUSG00000061578 ENSMUST00000180430 Ksr2 protein_coding Interval_1220 chr1 17244681 17244890 + 0 NA Intergenic Intergenic 5707 ENSMUSG00000100272.1 ENSMUSG00000100272 ENSMUST00000187478 Gm28785 processed_pseudogene Interval_125536 chr5 69434950 69435342 + 0 NA Intergenic Intergenic -26006 ENSMUSG00000043484.3 ENSMUSG00000043484 ENSMUST00000063197 Gm5867 processed_pseudogene Interval_121068 chr4 152554162 152555046 + 0 NA exon (ENSMUSG00000039577.17, exon 19 of 29) protein_coding-exon (ENSMUSG00000039577.17, exon 19 of 29) 76426 ENSMUSG00000039577.17 ENSMUSG00000039577 ENSMUST00000123635 Nphp4 protein_coding Interval_45712 chr13 57228839 57229226 + 0 NA Intergenic Intergenic -10815 ENSMUSG00000114363.1 ENSMUSG00000114363 ENSMUST00000225562 Gm48174 processed_pseudogene Interval_121797 chr5 8357191 8357394 + 0 NA intron (ENSMUSG00000040537.17, intron 2 of 4) protein_coding-intron (ENSMUSG00000040537.17, intron 2 of 28) -27897 ENSMUSG00000106265.1 ENSMUSG00000106265 ENSMUST00000198595 Gm42490 TEC Interval_150778 chr7 114317001 114318126 + 0 NA intron (ENSMUSG00000087475.3, intron 3 of 3) lincRNA-intron (ENSMUSG00000087475.3, intron 3 of 3) -41496 ENSMUSG00000030751.18 ENSMUSG00000030751 ENSMUST00000210966 Psma1 protein_coding Interval_3056 chr1 52748167 52748677 + 0 NA Intergenic Intergenic -8297 ENSMUSG00000100230.1 ENSMUSG00000100230 ENSMUST00000188413 Gm28650 processed_pseudogene Interval_84742 chr19 16132167 16134014 + 0 NA promoter-TSS (ENSMUSG00000024639.5) protein_coding-promoter-TSS (ENSMUSG00000024639.5) -206 ENSMUSG00000024639.5 ENSMUSG00000024639 ENSMUST00000167656 Gnaq protein_coding Interval_161756 chr8 122573511 122573767 + 0 NA TTS (ENSMUSG00000006585.3) protein_coding-TTS (ENSMUSG00000006585.3) 1850 ENSMUSG00000006589.8 ENSMUSG00000006589 ENSMUST00000211810 Aprt protein_coding Interval_143147 chr7 3666885 3667411 + 0 NA promoter-TSS (ENSMUSG00000019734.16) protein_coding-promoter-TSS (ENSMUSG00000019734.16) 896 ENSMUSG00000086032.1 ENSMUSG00000086032 ENSMUST00000138926 Gm15929 antisense Interval_64919 chr16 17199397 17199742 + 0 NA intron (ENSMUSG00000038965.17, intron 1 of 4) protein_coding-intron (ENSMUSG00000038965.17, intron 1 of 3) 1890 ENSMUSG00000038965.17 ENSMUSG00000038965 ENSMUST00000231557 Ube2l3 protein_coding Interval_41833 chr13 3109132 3110669 + 0 NA intron (ENSMUSG00000091834.2, intron 1 of 3) transcribed_unprocessed_pseudogene-intron (ENSMUSG00000091834.2, intron 1 of 3) 9662 ENSMUSG00000113784.1 ENSMUSG00000113784 ENSMUST00000222294 Gm46400 lincRNA Interval_103225 chr3 37178858 37179101 + 0 NA Intergenic Intergenic -3906 ENSMUSG00000084754.1 ENSMUSG00000084754 ENSMUST00000148448 Gm12532 lincRNA Interval_118179 chr4 129380575 129382848 + 0 NA Intergenic Intergenic 1867 ENSMUSG00000082468.1 ENSMUSG00000082468 ENSMUST00000118912 Gm12980 processed_pseudogene Interval_52617 chr14 47996335 47997102 + 0 NA intron (ENSMUSG00000115425.1, intron 2 of 2) lincRNA-intron (ENSMUSG00000115425.1, intron 2 of 2) 2777 ENSMUSG00000115425.1 ENSMUSG00000115425 ENSMUST00000227352 Gm49305 lincRNA Interval_112755 chr4 44629970 44630643 + 0 NA intron (ENSMUSG00000014030.15, intron 1 of 5) protein_coding-intron (ENSMUSG00000014030.15, intron 6 of 9) 15417 ENSMUSG00000014030.15 ENSMUSG00000014030 ENSMUST00000191036 Pax5 protein_coding Interval_159561 chr8 95467830 95468430 + 0 NA promoter-TSS (ENSMUSG00000110598.1) TEC-promoter-TSS (ENSMUSG00000110598.1) -516 ENSMUSG00000110598.1 ENSMUSG00000110598 ENSMUST00000211857 Gm45854 TEC Interval_171301 chr9 116223362 116223988 + 0 NA intron (ENSMUSG00000111324.1, intron 2 of 3) lincRNA-intron (ENSMUSG00000111324.1, intron 2 of 3) 4873 ENSMUSG00000111324.1 ENSMUSG00000111324 ENSMUST00000217302 Gm31410 lincRNA Interval_128665 chr5 114604186 114604914 + 0 NA intron (ENSMUSG00000041930.7, intron 2 of 2) protein_coding-intron (ENSMUSG00000041930.7, intron 2 of 2) 36533 ENSMUSG00000041930.7 ENSMUSG00000041930 ENSMUST00000130983 Fam222a protein_coding Interval_108787 chr3 131277451 131278825 + 0 NA Intergenic Intergenic -6114 ENSMUSG00000027984.8 ENSMUSG00000027984 ENSMUST00000152427 Hadh protein_coding Interval_34504 chr12 4717360 4718163 + 0 NA intron (ENSMUSG00000079177.4, intron 7 of 7) protein_coding-intron (ENSMUSG00000079177.4, intron 7 of 7) 20557 ENSMUSG00000079177.4 ENSMUSG00000079177 ENSMUST00000220075 Fam228a protein_coding Interval_52432 chr14 46363227 46363402 + 0 NA Intergenic Intergenic -17813 ENSMUSG00000079261.2 ENSMUSG00000079261 ENSMUST00000147092 Gm15217 protein_coding Interval_156023 chr8 42654548 42654976 + 0 NA Intergenic Intergenic -88045 ENSMUSG00000088312.1 ENSMUSG00000088312 ENSMUST00000157687 Gm26181 snRNA Interval_52920 chr14 52065723 52067045 + 0 NA Intergenic Intergenic -2916 ENSMUSG00000065853.1 ENSMUSG00000065853 ENSMUST00000083919 Gm22354 snoRNA Interval_62067 chr15 86192448 86193413 + 0 NA Intergenic Intergenic 7202 ENSMUSG00000086424.1 ENSMUSG00000086424 ENSMUST00000133675 Gm15569 antisense Interval_156276 chr8 46845062 46846040 + 0 NA intron (ENSMUSG00000031627.9, intron 7 of 7) protein_coding-intron (ENSMUSG00000031627.9, intron 8 of 8) -11639 ENSMUSG00000110414.1 ENSMUSG00000110414 ENSMUST00000209717 Gm45481 TEC Interval_88132 chr19 59461426 59461996 + 0 NA exon (ENSMUSG00000043969.4, exon 2 of 3) protein_coding-exon (ENSMUSG00000043969.4, exon 2 of 3) -1091 ENSMUSG00000043969.4 ENSMUSG00000043969 ENSMUST00000174573 Emx2 protein_coding Interval_69968 chr17 3574285 3574827 + 0 NA Intergenic Intergenic 16732 ENSMUSG00000116852.1 ENSMUSG00000116852 ENSMUST00000231344 1700102H20Rik lincRNA Interval_170123 chr9 105052878 105053952 + 0 NA exon (ENSMUSG00000032563.16, exon 1 of 10) protein_coding-exon (ENSMUSG00000032563.16, exon 1 of 10) -11362 ENSMUSG00000104344.1 ENSMUSG00000104344 ENSMUST00000193657 Gm38077 TEC Interval_78917 chr18 21589555 21590254 + 0 NA intron (ENSMUSG00000042514.11, intron 3 of 8) protein_coding-intron (ENSMUSG00000042514.11, intron 2 of 7) -61544 ENSMUSG00000043168.12 ENSMUSG00000043168 ENSMUST00000139804 4930426D05Rik antisense Interval_85433 chr19 26069327 26070139 + 0 NA Intergenic Intergenic -23266 ENSMUSG00000118016.1 ENSMUSG00000118016 ENSMUST00000237184 1700048O14Rik processed_transcript Interval_22565 chr11 11812075 11812509 + 0 NA Intergenic Intergenic -3330 ENSMUSG00000035455.12 ENSMUSG00000035455 ENSMUST00000150714 Fignl1 protein_coding Interval_71464 chr17 23941942 23942605 + 0 NA promoter-TSS (ENSMUSG00000024128.13) protein_coding-promoter-TSS (ENSMUSG00000024128.13) 440 ENSMUSG00000024128.13 ENSMUSG00000024128 ENSMUST00000182519 Sbp protein_coding Interval_85396 chr19 25469516 25470207 + 0 NA Intergenic Intergenic -15798 ENSMUSG00000064843.1 ENSMUSG00000064843 ENSMUST00000082909 Gm26207 snRNA Interval_53625 chr14 60250916 60252151 + 0 NA promoter-TSS (ENSMUSG00000114797.1) protein_coding-promoter-TSS (ENSMUSG00000114797.1) -102 ENSMUSG00000063895.7 ENSMUSG00000063895 ENSMUST00000225805 Nupl1 protein_coding Interval_168804 chr9 87206531 87206706 + 0 NA intron (ENSMUSG00000056919.9, intron 2 of 2) protein_coding-intron (ENSMUSG00000056919.9, intron 22 of 26) 6509 ENSMUSG00000087731.1 ENSMUSG00000087731 ENSMUST00000157106 Gm24649 rRNA Interval_27904 chr11 70742624 70744550 + 0 NA Intergenic Intergenic 11564 ENSMUSG00000085502.1 ENSMUSG00000085502 ENSMUST00000127333 Gm12320 lincRNA Interval_126623 chr5 91037550 91039308 + 0 NA Intergenic Intergenic 10965 ENSMUSG00000035020.11 ENSMUSG00000035020 ENSMUST00000041516 Epgn protein_coding Interval_42389 chr13 12588798 12589638 + 0 NA promoter-TSS (ENSMUSG00000065158.1) snoRNA-promoter-TSS (ENSMUSG00000065158.1) -347 ENSMUSG00000065158.1 ENSMUSG00000065158 ENSMUST00000083224 Gm25483 snoRNA Interval_161378 chr8 120077895 120079931 + 0 NA intron (ENSMUSG00000092329.1, intron 1 of 15) protein_coding-intron (ENSMUSG00000092329.1, intron 1 of 15) 7922 ENSMUSG00000031823.14 ENSMUSG00000031823 ENSMUST00000123186 Zdhhc7 protein_coding Interval_105547 chr3 87582699 87582957 + 0 NA promoter-TSS (ENSMUSG00000077376.1) snoRNA-promoter-TSS (ENSMUSG00000077376.1) -37 ENSMUSG00000077376.1 ENSMUSG00000077376 ENSMUST00000104188 Gm25167 snoRNA Interval_167610 chr9 71126105 71126688 + 0 NA promoter-TSS (ENSMUSG00000111618.1) processed_pseudogene-promoter-TSS (ENSMUSG00000111618.1) -446 ENSMUSG00000111618.1 ENSMUSG00000111618 ENSMUST00000213527 Gm47268 processed_pseudogene Interval_21899 chr11 5059304 5060167 + 0 NA TTS (ENSMUSG00000034201.13) protein_coding-TTS (ENSMUSG00000034201.13) 769 ENSMUSG00000034209.4 ENSMUSG00000034209 ENSMUST00000126974 Rasl10a protein_coding Interval_130292 chr5 125456825 125457273 + 0 NA exon (ENSMUSG00000037905.13, exon 3 of 3) protein_coding-exon (ENSMUSG00000037905.13, exon 3 of 3) -14448 ENSMUSG00000104793.1 ENSMUSG00000104793 ENSMUST00000199788 Gm43756 TEC Interval_169967 chr9 103308958 103309238 + 0 NA intron (ENSMUSG00000032555.10, intron 3 of 4) protein_coding-intron (ENSMUSG00000032555.10, intron 3 of 27) -34838 ENSMUSG00000032555.10 ENSMUSG00000032555 ENSMUST00000185972 Topbp1 protein_coding Interval_11635 chr1 183639050 183640671 + 0 NA Intergenic Intergenic 42271 ENSMUSG00000090533.2 ENSMUSG00000090533 ENSMUST00000172123 Gm8214 processed_pseudogene Interval_127905 chr5 108790510 108791013 + 0 NA intron (ENSMUSG00000004821.1, intron 1 of 4) protein_coding-intron (ENSMUSG00000004821.1, intron 1 of 4) 4602 ENSMUSG00000004821.1 ENSMUSG00000004821 ENSMUST00000004943 Tmed11 protein_coding Interval_97383 chr2 135656630 135656948 + 0 NA Intergenic Intergenic 7882 ENSMUSG00000084762.1 ENSMUSG00000084762 ENSMUST00000146980 Platr3 lincRNA Interval_155866 chr8 40417991 40418292 + 0 NA Intergenic Intergenic -5963 ENSMUSG00000039470.15 ENSMUSG00000039470 ENSMUST00000164934 Zdhhc2 protein_coding Interval_137267 chr6 70906731 70907540 + 0 NA Intergenic Intergenic 11792 ENSMUSG00000051896.4 ENSMUSG00000051896 ENSMUST00000063456 Tex37 protein_coding Interval_9184 chr1 154836703 154837042 + 0 NA intron (ENSMUSG00000004110.17, intron 1 of 3) protein_coding-intron (ENSMUSG00000004110.17, intron 1 of 3) -19931 ENSMUSG00000004110.17 ENSMUSG00000004110 ENSMUST00000186256 Cacna1e protein_coding Interval_174705 chrX 163857214 163857442 + 0 NA Intergenic Intergenic -54073 ENSMUSG00000031367.15 ENSMUSG00000031367 ENSMUST00000140845 Ap1s2 protein_coding Interval_62529 chr15 94403204 94404812 + 0 NA exon (ENSMUSG00000022449.14, exon 1 of 39) protein_coding-exon (ENSMUSG00000022449.14, exon 1 of 39) 250 ENSMUSG00000022449.14 ENSMUSG00000022449 ENSMUST00000128797 Adamts20 protein_coding Interval_6759 chr1 119301358 119303051 + 0 NA Intergenic Intergenic 24629 ENSMUSG00000099860.1 ENSMUSG00000099860 ENSMUST00000189894 Gm29456 lincRNA Interval_33764 chr11 118354592 118355951 + 0 NA exon (ENSMUSG00000017466.9, exon 1 of 5) protein_coding-exon (ENSMUSG00000017466.9, exon 1 of 5) 469 ENSMUSG00000017466.9 ENSMUSG00000017466 ENSMUST00000155707 Timp2 protein_coding Interval_80539 chr18 43584459 43584825 + 0 NA intron (ENSMUSG00000024502.10, intron 2 of 21) protein_coding-intron (ENSMUSG00000024502.10, intron 2 of 21) -44031 ENSMUSG00000024502.10 ENSMUSG00000024502 ENSMUST00000237069 Jakmip2 protein_coding Interval_26208 chr11 55097464 55098530 + 0 NA promoter-TSS (ENSMUSG00000000594.7) protein_coding-promoter-TSS (ENSMUSG00000000594.7) -118 ENSMUSG00000000594.7 ENSMUSG00000000594 ENSMUST00000000608 Gm2a protein_coding Interval_116261 chr4 109117538 109118614 + 0 NA promoter-TSS (ENSMUSG00000028559.17) protein_coding-promoter-TSS (ENSMUSG00000028559.17) 43121 ENSMUSG00000088014.1 ENSMUSG00000088014 ENSMUST00000157389 Gm23743 misc_RNA Interval_136852 chr6 61381178 61381384 + 0 NA intron (ENSMUSG00000039578.17, intron 2 of 3) protein_coding-intron (ENSMUSG00000039578.17, intron 3 of 9) -19326 ENSMUSG00000107757.1 ENSMUSG00000107757 ENSMUST00000204456 Gm43898 processed_pseudogene Interval_68818 chr16 87329306 87329675 + 0 NA Intergenic Intergenic -24753 ENSMUSG00000044442.11 ENSMUSG00000044442 ENSMUST00000118115 N6amt1 protein_coding Interval_38867 chr12 83506618 83508373 + 0 NA Intergenic Intergenic 2413 ENSMUSG00000113664.1 ENSMUSG00000113664 ENSMUST00000221402 Gm47184 processed_pseudogene Interval_38641 chr12 80757462 80759300 + 0 NA promoter-TSS (ENSMUSG00000097575.2) antisense-promoter-TSS (ENSMUSG00000097575.2) -25 ENSMUSG00000097575.2 ENSMUSG00000097575 ENSMUST00000181092 Gm26796 antisense Interval_78354 chr18 12121017 12122013 + 0 NA promoter-TSS (ENSMUSG00000049411.15) protein_coding-promoter-TSS (ENSMUSG00000049411.15) -35 ENSMUSG00000049411.15 ENSMUSG00000049411 ENSMUST00000234833 Tmem241 protein_coding Interval_57123 chr15 6724978 6725625 + 0 NA intron (ENSMUSG00000050310.9, intron 2 of 9) protein_coding-intron (ENSMUSG00000050310.9, intron 2 of 37) 16922 ENSMUSG00000050310.9 ENSMUSG00000050310 ENSMUST00000061656 Rictor protein_coding Interval_94868 chr2 98331833 98332227 + 0 NA Intergenic Intergenic 40627 ENSMUSG00000080802.1 ENSMUSG00000080802 ENSMUST00000119552 Gm13804 processed_pseudogene Interval_60393 chr15 73461111 73461820 + 0 NA Intergenic Intergenic -32555 ENSMUSG00000116174.1 ENSMUSG00000116174 ENSMUST00000229262 Gm10362 processed_pseudogene Interval_73045 chr17 34365049 34365598 + 0 NA exon (ENSMUSG00000024340.15, exon 7 of 9) protein_coding-exon (ENSMUSG00000024340.15, exon 7 of 9) 10501 ENSMUSG00000024340.15 ENSMUSG00000024340 ENSMUST00000025198 Btnl2 protein_coding Interval_174216 chrX 139997618 139998847 + 0 NA intron (ENSMUSG00000031433.15, intron 1 of 7) protein_coding-intron (ENSMUSG00000031433.15, intron 1 of 6) 334 ENSMUSG00000031433.15 ENSMUSG00000031433 ENSMUST00000148703 Rbm41 protein_coding Interval_31601 chr11 101626731 101628534 + 0 NA promoter-TSS (ENSMUSG00000010362.9) protein_coding-promoter-TSS (ENSMUSG00000010362.9) 266 ENSMUSG00000065767.1 ENSMUSG00000065767 ENSMUST00000083833 Gm23849 snRNA Interval_95250 chr2 105201350 105201731 + 0 NA Intergenic Intergenic -22802 ENSMUSG00000055312.2 ENSMUSG00000055312 ENSMUST00000131060 Them7 protein_coding Interval_105827 chr3 89558693 89559053 + 0 NA intron (ENSMUSG00000000794.9, intron 1 of 7) protein_coding-intron (ENSMUSG00000000794.9, intron 1 of 7) -103645 ENSMUSG00000000794.9 ENSMUSG00000000794 ENSMUST00000124584 Kcnn3 protein_coding Interval_78408 chr18 12568011 12569871 + 0 NA intron (ENSMUSG00000024421.16, intron 31 of 37) protein_coding-intron (ENSMUSG00000024421.16, intron 68 of 74) 9596 ENSMUSG00000088342.1 ENSMUSG00000088342 ENSMUST00000157717 Gm22340 rRNA Interval_164333 chr9 35421022 35422254 + 0 NA promoter-TSS (ENSMUSG00000038119.15) protein_coding-promoter-TSS (ENSMUSG00000038119.15) -1950 ENSMUSG00000038119.15 ENSMUSG00000038119 ENSMUST00000127264 Cdon protein_coding Interval_163824 chr9 26927006 26928011 + 0 NA Intergenic Intergenic -4427 ENSMUSG00000079644.2 ENSMUSG00000079644 ENSMUST00000214461 Gm1110 protein_coding Interval_155670 chr8 35964899 35965122 + 0 NA Intergenic Intergenic 12568 ENSMUSG00000080592.1 ENSMUSG00000080592 ENSMUST00000116942 Gm22030 miRNA Interval_61033 chr15 78888751 78889935 + 0 NA TTS (ENSMUSG00000033128.9) protein_coding-TTS (ENSMUSG00000033128.9) -2497 ENSMUSG00000099267.1 ENSMUSG00000099267 ENSMUST00000183370 Mir6955 miRNA Interval_162333 chr8 127190485 127192668 + 0 NA intron (ENSMUSG00000025812.18, intron 1 of 1) protein_coding-intron (ENSMUSG00000025812.18, intron 2 of 23) 20172 ENSMUSG00000025812.18 ENSMUSG00000025812 ENSMUST00000159940 Pard3 protein_coding Interval_76193 chr17 76657090 76657324 + 0 NA Intergenic Intergenic 164283 ENSMUSG00000117498.1 ENSMUSG00000117498 ENSMUST00000234836 Gm18366 processed_pseudogene Interval_155989 chr8 41516654 41517609 + 0 NA Intergenic Intergenic 92538 ENSMUSG00000098149.1 ENSMUSG00000098149 ENSMUST00000183246 Gapdh-ps14 processed_pseudogene Interval_6492 chr1 112224811 112225995 + 0 NA Intergenic Intergenic 74314 ENSMUSG00000100020.1 ENSMUSG00000100020 ENSMUST00000190772 Gm19086 processed_pseudogene Interval_162970 chr9 13847514 13850166 + 0 NA intron (ENSMUSG00000037808.13, intron 2 of 2) protein_coding-intron (ENSMUSG00000037808.13, intron 2 of 2) 11963 ENSMUSG00000037808.13 ENSMUSG00000037808 ENSMUST00000213416 Fam76b protein_coding Interval_112380 chr4 40940285 40940908 + 0 NA intron (ENSMUSG00000028416.13, intron 4 of 6) protein_coding-intron (ENSMUSG00000028416.13, intron 4 of 6) 7698 ENSMUSG00000028416.13 ENSMUSG00000028416 ENSMUST00000030125 Bag1 protein_coding Interval_143887 chr7 16944258 16945574 + 0 NA exon (ENSMUSG00000070802.5, exon 1 of 1) protein_coding-exon (ENSMUSG00000070802.5, exon 1 of 1) 234 ENSMUSG00000070802.5 ENSMUSG00000070802 ENSMUST00000094807 Pnmal2 protein_coding Interval_128578 chr5 114130051 114131614 + 0 NA promoter-TSS (ENSMUSG00000029591.14) protein_coding-promoter-TSS (ENSMUSG00000029591.14) -1248 ENSMUSG00000029591.14 ENSMUSG00000029591 ENSMUST00000200479 Ung protein_coding Interval_157182 chr8 67241423 67241818 + 0 NA Intergenic Intergenic -28201 ENSMUSG00000080437.1 ENSMUSG00000080437 ENSMUST00000116787 Gm24274 snRNA Interval_149315 chr7 97399578 97400735 + 0 NA promoter-TSS (ENSMUSG00000030647.8) protein_coding-promoter-TSS (ENSMUSG00000030647.8) 53 ENSMUSG00000030647.8 ENSMUSG00000030647 ENSMUST00000149122 Ndufc2 protein_coding Interval_54214 chr14 66319389 66320457 + 0 NA Intergenic Intergenic 21306 ENSMUSG00000114618.1 ENSMUSG00000114618 ENSMUST00000225213 Gm41183 lincRNA Interval_161113 chr8 117548102 117548299 + 0 NA intron (ENSMUSG00000034330.10, intron 2 of 32) protein_coding-intron (ENSMUSG00000034330.10, intron 2 of 32) -1174 ENSMUSG00000092818.2 ENSMUSG00000092818 ENSMUST00000175077 Gm27361 miRNA Interval_64863 chr16 16709803 16710049 + 0 NA intron (ENSMUSG00000116096.1, intron 4 of 5) lincRNA-intron (ENSMUSG00000116096.1, intron 4 of 5) 8170 ENSMUSG00000116096.1 ENSMUSG00000116096 ENSMUST00000230601 4933404G15Rik lincRNA Interval_127695 chr5 106756762 106757701 + 0 NA Intergenic Intergenic -18467 ENSMUSG00000106301.1 ENSMUSG00000106301 ENSMUST00000197334 Gm8365 processed_pseudogene Interval_69409 chr16 92995203 92995904 + 0 NA Intergenic Intergenic -77202 ENSMUSG00000098983.1 ENSMUSG00000098983 ENSMUST00000184529 Gm28003 miRNA Interval_60952 chr15 78149954 78150151 + 0 NA Intergenic Intergenic 16884 ENSMUSG00000016637.7 ENSMUSG00000016637 ENSMUST00000229417 Ift27 protein_coding Interval_127281 chr5 102079750 102079983 + 0 NA Intergenic Intergenic 9648 ENSMUSG00000106492.1 ENSMUSG00000106492 ENSMUST00000196325 Gm29707 lincRNA Interval_128514 chr5 113749147 113749416 + 0 NA intron (ENSMUSG00000018974.7, intron 12 of 16) protein_coding-intron (ENSMUSG00000018974.7, intron 12 of 18) 5476 ENSMUSG00000018974.7 ENSMUSG00000018974 ENSMUST00000196778 Sart3 protein_coding Interval_16770 chr10 68058289 68058575 + 0 NA intron (ENSMUSG00000037846.18, intron 14 of 14) protein_coding-intron (ENSMUSG00000037846.18, intron 14 of 14) -31806 ENSMUSG00000086838.1 ENSMUSG00000086838 ENSMUST00000143555 Gm16212 antisense Interval_135374 chr6 38695407 38695871 + 0 NA exon (ENSMUSG00000061436.15, exon 15 of 15) protein_coding-exon (ENSMUSG00000061436.15, exon 15 of 15) 31760 ENSMUSG00000079598.4 ENSMUSG00000079598 ENSMUST00000238216 Clec2l protein_coding Interval_172829 chrX 50657703 50658385 + 0 NA Intergenic Intergenic -93161 ENSMUSG00000085396.7 ENSMUSG00000085396 ENSMUST00000148530 Firre processed_transcript Interval_100741 chr2 172277656 172278072 + 0 NA Intergenic Intergenic -10269 ENSMUSG00000085949.1 ENSMUSG00000085949 ENSMUST00000152112 Gm14275 lincRNA Interval_133148 chr5 150182845 150183346 + 0 NA intron (ENSMUSG00000056602.12, intron 1 of 6) protein_coding-intron (ENSMUSG00000056602.12, intron 1 of 4) -60768 ENSMUSG00000107082.1 ENSMUSG00000107082 ENSMUST00000201709 Gm36378 processed_pseudogene Interval_27091 chr11 62820031 62822241 + 0 NA exon (ENSMUSG00000047821.16, exon 2 of 2) protein_coding-exon (ENSMUSG00000047821.16, exon 2 of 2) 696 ENSMUSG00000047821.16 ENSMUSG00000047821 ENSMUST00000128623 Trim16 protein_coding Interval_124376 chr5 45027679 45028429 + 0 NA intron (ENSMUSG00000029092.9, intron 5 of 5) lincRNA-intron (ENSMUSG00000029092.9, intron 5 of 5) -43812 ENSMUSG00000067331.5 ENSMUSG00000067331 ENSMUST00000087431 Gm10205 pseudogene Interval_7811 chr1 133859872 133860294 + 0 NA Intergenic Intergenic 24894 ENSMUSG00000100830.1 ENSMUSG00000100830 ENSMUST00000190927 Gm28441 lincRNA Interval_97987 chr2 146459507 146460302 + 0 NA intron (ENSMUSG00000037110.20, intron 4 of 41) protein_coding-intron (ENSMUSG00000037110.20, intron 4 of 15) 52440 ENSMUSG00000037110.20 ENSMUSG00000037110 ENSMUST00000124709 Ralgapa2 protein_coding Interval_145202 chr7 30614622 30615731 + 0 NA Intergenic Intergenic -2329 ENSMUSG00000006313.5 ENSMUSG00000006313 ENSMUST00000006476 Upk1a protein_coding Interval_26738 chr11 60104730 60106989 + 0 NA intron (ENSMUSG00000062115.15, intron 1 of 4) protein_coding-intron (ENSMUSG00000062115.15, intron 1 of 5) 6312 ENSMUSG00000098502.1 ENSMUSG00000098502 ENSMUST00000183502 Gm27511 misc_RNA Interval_114583 chr4 82734471 82734752 + 0 NA Intergenic Intergenic -28861 ENSMUSG00000008575.17 ENSMUSG00000008575 ENSMUST00000152588 Nfib protein_coding Interval_125593 chr5 72350451 72350864 + 0 NA intron (ENSMUSG00000005220.10, intron 9 of 20) protein_coding-intron (ENSMUSG00000005220.10, intron 10 of 21) 34303 ENSMUSG00000093400.1 ENSMUSG00000093400 ENSMUST00000176396 Gm20647 antisense Interval_31464 chr11 100825344 100825596 + 0 NA intron (ENSMUSG00000020919.11, intron 1 of 5) protein_coding-intron (ENSMUSG00000020919.11, intron 1 of 18) 25068 ENSMUSG00000020919.11 ENSMUSG00000020919 ENSMUST00000126266 Stat5b protein_coding Interval_169387 chr9 96850649 96851481 + 0 NA intron (ENSMUSG00000043587.15, intron 2 of 3) protein_coding-intron (ENSMUSG00000043587.15, intron 2 of 5) -36731 ENSMUSG00000100922.1 ENSMUSG00000100922 ENSMUST00000186517 Gm8520 processed_pseudogene Interval_4073 chr1 67404937 67405641 + 0 NA Intergenic Intergenic 148065 ENSMUSG00000077745.1 ENSMUSG00000077745 ENSMUST00000104557 Gm26342 snoRNA Interval_84122 chr19 7331418 7332544 + 0 NA intron (ENSMUSG00000024969.15, intron 1 of 7) protein_coding-intron (ENSMUSG00000024969.15, intron 1 of 17) 9211 ENSMUSG00000024969.15 ENSMUSG00000024969 ENSMUST00000168324 Mark2 protein_coding Interval_158464 chr8 83869614 83869932 + 0 NA Intergenic Intergenic -30962 ENSMUSG00000013033.16 ENSMUSG00000013033 ENSMUST00000131018 Adgrl1 protein_coding Interval_93984 chr2 80505066 80506289 + 0 NA intron (ENSMUSG00000027002.13, intron 30 of 31) protein_coding-intron (ENSMUSG00000027002.13, intron 29 of 30) 6447 ENSMUSG00000082494.1 ENSMUSG00000082494 ENSMUST00000119857 Gm13687 processed_pseudogene Interval_69620 chr16 94653961 94654171 + 0 NA intron (ENSMUSG00000022897.15, intron 2 of 5) protein_coding-intron (ENSMUSG00000022897.15, intron 2 of 11) 33689 ENSMUSG00000081692.1 ENSMUSG00000081692 ENSMUST00000119372 Gm15971 processed_pseudogene Interval_98590 chr2 153436381 153437499 + 0 NA intron (ENSMUSG00000061411.12, intron 4 of 10) protein_coding-intron (ENSMUSG00000061411.12, intron 4 of 10) 23091 ENSMUSG00000082283.1 ENSMUSG00000082283 ENSMUST00000119815 Gm14472 processed_pseudogene Interval_41667 chr12 117587683 117588344 + 0 NA intron (ENSMUSG00000041992.9, intron 5 of 8) protein_coding-intron (ENSMUSG00000041992.9, intron 7 of 27) 13671 ENSMUSG00000089482.1 ENSMUSG00000089482 ENSMUST00000158857 Gm24741 rRNA Interval_68831 chr16 87439929 87441519 + 0 NA promoter-TSS (ENSMUSG00000041079.12) protein_coding-promoter-TSS (ENSMUSG00000041079.12) -163 ENSMUSG00000041079.12 ENSMUSG00000041079 ENSMUST00000231843 Rwdd2b protein_coding Interval_170182 chr9 105995920 105996156 + 0 NA exon (ENSMUSG00000032572.9, exon 37 of 38) protein_coding-exon (ENSMUSG00000032572.9, exon 37 of 38) -5680 ENSMUSG00000084714.1 ENSMUSG00000084714 ENSMUST00000122765 Gm24631 snRNA Interval_141628 chr6 131456265 131456439 + 0 NA Intergenic Intergenic -22441 ENSMUSG00000107832.1 ENSMUSG00000107832 ENSMUST00000204695 Gm18688 processed_pseudogene Interval_18143 chr10 82974383 82974854 + 0 NA Intergenic Intergenic -10880 ENSMUSG00000034612.7 ENSMUSG00000034612 ENSMUST00000040110 Chst11 protein_coding Interval_109628 chr3 145464586 145464847 + 0 NA intron (ENSMUSG00000028197.4, intron 37 of 59) protein_coding-intron (ENSMUSG00000028197.4, intron 37 of 59) 45390 ENSMUSG00000105959.1 ENSMUSG00000105959 ENSMUST00000199255 D530037P16Rik sense_overlapping Interval_92303 chr2 58544922 58545293 + 0 NA intron (ENSMUSG00000026836.15, intron 1 of 11) protein_coding-intron (ENSMUSG00000026836.15, intron 1 of 10) -28835 ENSMUSG00000026836.15 ENSMUSG00000026836 ENSMUST00000126407 Acvr1 protein_coding Interval_12280 chr1 191364302 191365283 + 0 NA intron (ENSMUSG00000026626.11, intron 3 of 7) protein_coding-intron (ENSMUSG00000026626.11, intron 3 of 12) 34507 ENSMUSG00000026626.11 ENSMUSG00000026626 ENSMUST00000194832 Ppp2r5a protein_coding Interval_68724 chr16 85061795 85062151 + 0 NA intron (ENSMUSG00000022892.11, intron 5 of 13) protein_coding-intron (ENSMUSG00000022892.11, intron 5 of 15) -18138 ENSMUSG00000115469.1 ENSMUSG00000115469 ENSMUST00000227918 Gm49227 antisense Interval_75049 chr17 62392061 62393539 + 0 NA intron (ENSMUSG00000117066.1, intron 4 of 4) lincRNA-intron (ENSMUSG00000117066.1, intron 4 of 4) 43257 ENSMUSG00000117066.1 ENSMUSG00000117066 ENSMUST00000232942 Gm49860 lincRNA Interval_172771 chrX 48487596 48487886 + 0 NA intron (ENSMUSG00000036932.14, intron 6 of 14) protein_coding-intron (ENSMUSG00000036932.14, intron 6 of 15) -4845 ENSMUSG00000036932.14 ENSMUSG00000036932 ENSMUST00000124623 Aifm1 protein_coding Interval_42415 chr13 13376248 13376443 + 0 NA intron (ENSMUSG00000021306.11, intron 1 of 3) protein_coding-intron (ENSMUSG00000021306.11, intron 1 of 6) 17219 ENSMUSG00000021306.11 ENSMUSG00000021306 ENSMUST00000221498 Gpr137b protein_coding Interval_89587 chr2 23021460 23022732 + 0 NA intron (ENSMUSG00000058835.14, intron 1 of 10) protein_coding-intron (ENSMUSG00000058835.14, intron 1 of 9) -2429 ENSMUSG00000083650.1 ENSMUSG00000083650 ENSMUST00000120528 Gm13357 processed_pseudogene Interval_15652 chr10 53018269 53018505 + 0 NA intron (ENSMUSG00000038602.7, intron 2 of 7) protein_coding-intron (ENSMUSG00000038602.7, intron 2 of 7) -84156 ENSMUSG00000112681.1 ENSMUSG00000112681 ENSMUST00000218783 Gm47622 sense_intronic Interval_142536 chr6 143140913 143144221 + 0 NA intron (ENSMUSG00000108094.1, intron 5 of 8) lincRNA-intron (ENSMUSG00000108094.1, intron 5 of 8) 7480 ENSMUSG00000107398.1 ENSMUSG00000107398 ENSMUST00000203058 Gm44306 processed_pseudogene Interval_150086 chr7 105730115 105730803 + 0 NA Intergenic Intergenic 3487 ENSMUSG00000030888.14 ENSMUSG00000030888 ENSMUST00000137902 Rrp8 protein_coding Interval_29544 chr11 84797523 84798320 + 0 NA Intergenic Intergenic 17469 ENSMUSG00000018405.7 ENSMUSG00000018405 ENSMUST00000139076 Mrm1 protein_coding Interval_76641 chr17 83048778 83048950 + 0 NA intron (ENSMUSG00000117399.1, intron 2 of 3) processed_transcript-intron (ENSMUSG00000117399.1, intron 2 of 3) -20041 ENSMUSG00000100154.1 ENSMUSG00000100154 ENSMUST00000187700 Gm29052 lincRNA Interval_121930 chr5 10007903 10008122 + 0 NA Intergenic Intergenic 39338 ENSMUSG00000106661.1 ENSMUSG00000106661 ENSMUST00000196361 Gm42832 processed_pseudogene Interval_48992 chr13 106788439 106788991 + 0 NA intron (ENSMUSG00000101308.1, intron 1 of 3) antisense-intron (ENSMUSG00000101308.1, intron 1 of 3) 645 ENSMUSG00000101308.1 ENSMUSG00000101308 ENSMUST00000187867 Gm28989 antisense Interval_173607 chrX 100795172 100795564 + 0 NA intron (ENSMUSG00000000881.12, intron 1 of 11) protein_coding-intron (ENSMUSG00000000881.12, intron 9 of 18) 18083 ENSMUSG00000000881.12 ENSMUSG00000000881 ENSMUST00000146772 Dlg3 protein_coding Interval_73967 chr17 45735577 45737597 + 0 NA intron (ENSMUSG00000097727.8, intron 1 of 4) lincRNA-intron (ENSMUSG00000097727.8, intron 1 of 4) -2743 ENSMUSG00000094690.2 ENSMUSG00000094690 ENSMUST00000178179 1600014C23Rik protein_coding Interval_110035 chr3 152689726 152690327 + 0 NA Intergenic Intergenic 23113 ENSMUSG00000097745.1 ENSMUSG00000097745 ENSMUST00000181093 AI115009 antisense Interval_21165 chr10 127001614 127001826 + 0 NA intron (ENSMUSG00000025432.11, intron 1 of 19) protein_coding-intron (ENSMUSG00000025432.11, intron 1 of 19) 981 ENSMUSG00000025432.11 ENSMUSG00000025432 ENSMUST00000129173 Avil protein_coding Interval_81437 chr18 60746619 60749092 + 0 NA intron (ENSMUSG00000024608.11, intron 1 of 5) protein_coding-intron (ENSMUSG00000024608.11, intron 1 of 5) 757 ENSMUSG00000024608.11 ENSMUSG00000024608 ENSMUST00000122279 Rps14 protein_coding Interval_43031 chr13 23352529 23352906 + 0 NA TTS (ENSMUSG00000046351.11) protein_coding-TTS (ENSMUSG00000046351.11) 10493 ENSMUSG00000046351.11 ENSMUSG00000046351 ENSMUST00000223795 Zfp322a protein_coding Interval_129263 chr5 118516322 118517085 + 0 NA Intergenic Intergenic 29736 ENSMUSG00000082365.2 ENSMUSG00000082365 ENSMUST00000119191 Gm15754 transcribed_processed_pseudogene Interval_70220 chr17 6778613 6779709 + 0 NA intron (ENSMUSG00000052397.8, intron 1 of 12) protein_coding-intron (ENSMUSG00000052397.8, intron 1 of 12) -11632 ENSMUSG00000116893.1 ENSMUSG00000116893 ENSMUST00000231691 Gm49717 processed_pseudogene Interval_79471 chr18 32145087 32145321 + 0 NA Intergenic Intergenic 4474 ENSMUSG00000117606.1 ENSMUSG00000117606 ENSMUST00000234291 Gm5969 processed_pseudogene Interval_36100 chr12 35824932 35825156 + 0 NA Intergenic Intergenic -5780 ENSMUSG00000114090.1 ENSMUSG00000114090 ENSMUST00000221625 Gm9472 processed_pseudogene Interval_140445 chr6 118167334 118168587 + 0 NA exon (ENSMUSG00000030110.13, exon 15 of 20) protein_coding-exon (ENSMUSG00000030110.13, exon 15 of 20) 29758 ENSMUSG00000030110.13 ENSMUSG00000030110 ENSMUST00000088790 Ret protein_coding Interval_84919 chr19 18749275 18750850 + 0 NA promoter-TSS (ENSMUSG00000024727.9) protein_coding-promoter-TSS (ENSMUSG00000024727.9) -8563 ENSMUSG00000024727.9 ENSMUSG00000024727 ENSMUST00000237020 Trpm6 protein_coding Interval_4242 chr1 72121379 72122160 + 0 NA intron (ENSMUSG00000102123.1, intron 1 of 3) lincRNA-intron (ENSMUSG00000102123.1, intron 1 of 3) 232 ENSMUSG00000102123.1 ENSMUSG00000102123 ENSMUST00000191139 Gm4319 lincRNA Interval_125711 chr5 73433001 73433740 + 0 NA intron (ENSMUSG00000029154.13, intron 2 of 2) protein_coding-intron (ENSMUSG00000029154.13, intron 12 of 15) 3039 ENSMUSG00000029154.13 ENSMUSG00000029154 ENSMUST00000135820 Cwh43 protein_coding Interval_145535 chr7 35437323 35437561 + 0 NA intron (ENSMUSG00000023072.14, intron 3 of 3) protein_coding-intron (ENSMUSG00000023072.14, intron 18 of 18) 7795 ENSMUSG00000100776.1 ENSMUSG00000100776 ENSMUST00000185699 Gm18254 unprocessed_pseudogene Interval_143696 chr7 15765272 15765475 + 0 NA Intergenic Intergenic 1826 ENSMUSG00000104759.2 ENSMUSG00000104759 ENSMUST00000197110 Ranbp2-ps12 processed_pseudogene Interval_53567 chr14 59365196 59367237 + 0 NA promoter-TSS (ENSMUSG00000068245.14) protein_coding-promoter-TSS (ENSMUSG00000068245.14) -776 ENSMUSG00000068245.14 ENSMUSG00000068245 ENSMUST00000161031 Phf11d protein_coding Interval_93595 chr2 74715084 74716298 + 0 NA intron (ENSMUSG00000052371.5, intron 1 of 2) protein_coding-intron (ENSMUSG00000079277.9, intron 1 of 2) -3165 ENSMUSG00000052371.5 ENSMUSG00000052371 ENSMUST00000139005 Hoxd3os1 antisense Interval_102025 chr3 15245109 15245459 + 0 NA Intergenic Intergenic -73842 ENSMUSG00000103912.1 ENSMUSG00000103912 ENSMUST00000194008 Gm33819 lincRNA Interval_34389 chr12 3805977 3808859 + 0 NA intron (ENSMUSG00000020661.15, intron 1 of 22) protein_coding-intron (ENSMUSG00000020661.15, intron 1 of 22) 258 ENSMUSG00000020661.15 ENSMUSG00000020661 ENSMUST00000172913 Dnmt3a protein_coding Interval_77745 chr17 94855533 94856254 + 0 NA Intergenic Intergenic 2725 ENSMUSG00000117582.1 ENSMUSG00000117582 ENSMUST00000234178 Gm19853 processed_pseudogene Interval_166196 chr9 57435777 57436436 + 0 NA intron (ENSMUSG00000063849.6, intron 2 of 6) protein_coding-intron (ENSMUSG00000063849.6, intron 2 of 6) -14788 ENSMUSG00000063849.6 ENSMUSG00000063849 ENSMUST00000215299 Ppcdc protein_coding Interval_2409 chr1 39069308 39070760 + 0 NA Intergenic Intergenic -12397 ENSMUSG00000104188.1 ENSMUSG00000104188 ENSMUST00000195476 Gm37821 lincRNA Interval_117081 chr4 119411586 119412257 + 0 NA intron (ENSMUSG00000028637.16, intron 1 of 14) protein_coding-intron (ENSMUSG00000028637.16, intron 1 of 14) 10437 ENSMUSG00000028636.14 ENSMUSG00000028636 ENSMUST00000030385 Ppcs protein_coding Interval_151139 chr7 118772328 118773393 + 0 NA intron (ENSMUSG00000030982.19, intron 9 of 14) protein_coding-intron (ENSMUSG00000030982.19, intron 2 of 23) 4843 ENSMUSG00000109303.1 ENSMUSG00000109303 ENSMUST00000208351 Gm44549 sense_intronic Interval_108013 chr3 119870931 119871299 + 0 NA Intergenic Intergenic 33211 ENSMUSG00000096196.1 ENSMUSG00000096196 ENSMUST00000116701 Gm26137 miRNA Interval_85418 chr19 25628300 25628955 + 0 NA Intergenic Intergenic 18326 ENSMUSG00000042372.5 ENSMUSG00000042372 ENSMUST00000048935 Dmrt3 protein_coding Interval_5614 chr1 90234394 90234739 + 0 NA Intergenic Intergenic -6040 ENSMUSG00000104087.1 ENSMUSG00000104087 ENSMUST00000195172 Gm38277 TEC Interval_6151 chr1 98094899 98096178 + 0 NA promoter-TSS (ENSMUSG00000026335.16) protein_coding-promoter-TSS (ENSMUSG00000026335.16) -35918 ENSMUSG00000100182.6 ENSMUSG00000100182 ENSMUST00000186473 1810006J02Rik lincRNA Interval_69864 chr16 97697797 97698386 + 0 NA Intergenic Intergenic 65696 ENSMUSG00000005251.15 ENSMUSG00000005251 ENSMUST00000019386 Ripk4 protein_coding Interval_46295 chr13 63507815 63508056 + 0 NA TTS (ENSMUSG00000021466.12) protein_coding-TTS (ENSMUSG00000021466.12) 31743 ENSMUSG00000021466.12 ENSMUSG00000021466 ENSMUST00000220588 Ptch1 protein_coding Interval_15144 chr10 42879695 42879913 + 0 NA intron (ENSMUSG00000044770.14, intron 1 of 2) protein_coding-intron (ENSMUSG00000044770.14, intron 1 of 8) -7088 ENSMUSG00000111333.1 ENSMUSG00000111333 ENSMUST00000217454 Gm48670 processed_pseudogene Interval_95500 chr2 110346115 110346411 + 0 NA Intergenic Intergenic 16920 ENSMUSG00000074971.4 ENSMUSG00000074971 ENSMUST00000099626 Fibin protein_coding Interval_125347 chr5 66347846 66348630 + 0 NA intron (ENSMUSG00000029207.16, intron 11 of 17) protein_coding-intron (ENSMUSG00000029207.16, intron 12 of 17) -1013 ENSMUSG00000107155.1 ENSMUSG00000107155 ENSMUST00000201645 Gm43793 TEC Interval_128272 chr5 112214473 112215759 + 0 NA promoter-TSS (ENSMUSG00000097986.2) lincRNA-promoter-TSS (ENSMUSG00000097986.2) 751 ENSMUSG00000098395.1 ENSMUSG00000098395 ENSMUST00000184902 Gm27998 misc_RNA Interval_43938 chr13 38162240 38163328 + 0 NA intron (ENSMUSG00000054889.10, intron 1 of 23) protein_coding-intron (ENSMUSG00000054889.10, intron 1 of 23) -10992 ENSMUSG00000103789.1 ENSMUSG00000103789 ENSMUST00000191991 Gm10129 TEC Interval_98362 chr2 151804973 151805240 + 0 NA Intergenic Intergenic -6861 ENSMUSG00000083088.1 ENSMUSG00000083088 ENSMUST00000119923 Gm14153 processed_pseudogene Interval_106558 chr3 97202021 97202485 + 0 NA Intergenic Intergenic 43157 ENSMUSG00000028093.15 ENSMUSG00000028093 ENSMUST00000198329 Acp6 protein_coding Interval_171959 chr9 122956079 122956342 + 0 NA intron (ENSMUSG00000036768.6, intron 1 of 17) protein_coding-intron (ENSMUSG00000036768.6, intron 1 of 34) -5234 ENSMUSG00000032551.7 ENSMUSG00000032551 ENSMUST00000215129 1110059G10Rik protein_coding Interval_28531 chr11 76540877 76541395 + 0 NA intron (ENSMUSG00000017631.19, intron 1 of 22) protein_coding-intron (ENSMUSG00000017631.19, intron 1 of 22) 27067 ENSMUSG00000080763.2 ENSMUSG00000080763 ENSMUST00000119724 Gm12341 processed_pseudogene Interval_66477 chr16 34105020 34105447 + 0 NA intron (ENSMUSG00000061751.16, intron 33 of 48) protein_coding-intron (ENSMUSG00000061751.16, intron 34 of 59) -9205 ENSMUSG00000061751.16 ENSMUSG00000061751 ENSMUST00000132569 Kalrn protein_coding Interval_60816 chr15 76927474 76928192 + 0 NA Intergenic Intergenic -2442 ENSMUSG00000054967.7 ENSMUSG00000054967 ENSMUST00000230677 Zfp647 protein_coding Interval_10225 chr1 167299779 167300714 + 0 NA Intergenic Intergenic -3847 ENSMUSG00000102337.1 ENSMUSG00000102337 ENSMUST00000194887 Gm37232 processed_pseudogene Interval_64886 chr16 16996449 16996976 + 0 NA intron (ENSMUSG00000063358.17, intron 1 of 8) protein_coding-intron (ENSMUSG00000063358.17, intron 1 of 8) 9489 ENSMUSG00000087951.1 ENSMUSG00000087951 ENSMUST00000157326 Gm22558 snRNA Interval_60506 chr15 74518010 74520183 + 0 NA intron (ENSMUSG00000034730.17, intron 1 of 30) protein_coding-intron (ENSMUSG00000034730.17, intron 1 of 30) -44725 ENSMUSG00000093340.1 ENSMUSG00000093340 ENSMUST00000175599 Gm26117 miRNA Interval_32499 chr11 107919943 107920690 + 0 NA Intergenic Intergenic -8954 ENSMUSG00000040373.12 ENSMUSG00000040373 ENSMUST00000039071 Cacng5 protein_coding Interval_151304 chr7 120842585 120845178 + 0 NA intron (ENSMUSG00000035064.17, intron 1 of 17) protein_coding-intron (ENSMUSG00000035064.17, intron 1 of 17) 31417 ENSMUSG00000085118.2 ENSMUSG00000085118 ENSMUST00000141810 Gm15774 antisense Interval_67249 chr16 44764478 44765102 + 0 NA promoter-TSS (ENSMUSG00000022667.18) protein_coding-promoter-TSS (ENSMUSG00000022667.18) -1009 ENSMUSG00000022667.18 ENSMUSG00000022667 ENSMUST00000134625 Cd200r1 protein_coding Interval_1797 chr1 33836383 33839807 + 0 NA exon (ENSMUSG00000081402.4, exon 1 of 1) processed_pseudogene-exon (ENSMUSG00000081402.4, exon 1 of 1) 585 ENSMUSG00000081402.4 ENSMUSG00000081402 ENSMUST00000117459 Gm15455 processed_pseudogene Interval_108427 chr3 127043909 127044080 + 0 NA intron (ENSMUSG00000032826.19, intron 9 of 10) protein_coding-intron (ENSMUSG00000032826.19, intron 10 of 14) 8052 ENSMUSG00000105322.1 ENSMUSG00000105322 ENSMUST00000200275 Gm43751 TEC Interval_71030 chr17 17293367 17294723 + 0 NA promoter-TSS (ENSMUSG00000072761.10) lincRNA-promoter-TSS (ENSMUSG00000072761.10) -398 ENSMUSG00000072761.10 ENSMUSG00000072761 ENSMUST00000105311 Gm6712 lincRNA Interval_60831 chr15 77021414 77022037 + 0 NA intron (ENSMUSG00000018893.15, intron 3 of 4) protein_coding-intron (ENSMUSG00000018893.15, intron 2 of 3) 238 ENSMUSG00000018893.15 ENSMUSG00000018893 ENSMUST00000229125 Mb protein_coding Interval_159337 chr8 93840325 93840632 + 0 NA intron (ENSMUSG00000031748.16, intron 2 of 7) protein_coding-intron (ENSMUSG00000031748.16, intron 2 of 8) -26756 ENSMUSG00000097520.2 ENSMUSG00000097520 ENSMUST00000212638 4930488L21Rik antisense Interval_94215 chr2 85198287 85198529 + 0 NA intron (ENSMUSG00000086905.1, intron 1 of 1) antisense-intron (ENSMUSG00000086905.1, intron 1 of 1) 1476 ENSMUSG00000086905.1 ENSMUSG00000086905 ENSMUST00000126401 Gm13716 antisense Interval_25515 chr11 49416035 49416645 + 0 NA Intergenic Intergenic -6795 ENSMUSG00000107573.2 ENSMUSG00000107573 ENSMUST00000203369 Olfr1389 protein_coding Interval_152357 chr7 132315529 132317619 + 0 NA promoter-TSS (ENSMUSG00000030930.14) protein_coding-promoter-TSS (ENSMUSG00000030930.14) -297 ENSMUSG00000030930.14 ENSMUSG00000030930 ENSMUST00000207068 Chst15 protein_coding Interval_46843 chr13 72287443 72287838 + 0 NA Intergenic Intergenic -62581 ENSMUSG00000113594.1 ENSMUSG00000113594 ENSMUST00000220890 Gm4052 processed_pseudogene Interval_86078 chr19 36384122 36385124 + 0 NA TTS (ENSMUSG00000087783.1) snRNA-TTS (ENSMUSG00000087783.1) 274 ENSMUSG00000087783.1 ENSMUSG00000087783 ENSMUST00000157158 Gm23170 snRNA Interval_17725 chr10 79758424 79758656 + 0 NA TTS (ENSMUSG00000035890.9) protein_coding-TTS (ENSMUSG00000035890.9) 3464 ENSMUSG00000020327.4 ENSMUSG00000020327 ENSMUST00000020577 Fgf22 protein_coding Interval_167952 chr9 74904972 74905381 + 0 NA Intergenic Intergenic 38692 ENSMUSG00000043013.10 ENSMUSG00000043013 ENSMUST00000160499 Onecut1 protein_coding Interval_153208 chr7 142427966 142428722 + 0 NA Intergenic Intergenic 3549 ENSMUSG00000077668.1 ENSMUSG00000077668 ENSMUST00000104480 Gm26143 snRNA Interval_50228 chr14 10659943 10660866 + 0 NA intron (ENSMUSG00000060579.13, intron 3 of 4) protein_coding-intron (ENSMUSG00000060579.13, intron 4 of 9) -78131 ENSMUSG00000089833.2 ENSMUSG00000089833 ENSMUST00000160149 Fhitos antisense Interval_69651 chr16 94865748 94867014 + 0 NA TTS (ENSMUSG00000043301.16) protein_coding-TTS (ENSMUSG00000043301.16) -3083 ENSMUSG00000095435.1 ENSMUSG00000095435 ENSMUST00000175509 Gm22745 miRNA Interval_138047 chr6 84587374 84590567 + 0 NA promoter-TSS (ENSMUSG00000063415.12) protein_coding-promoter-TSS (ENSMUSG00000063415.12) -1290 ENSMUSG00000063415.12 ENSMUSG00000063415 ENSMUST00000204109 Cyp26b1 protein_coding Interval_140060 chr6 113706140 113706331 + 0 NA promoter-TSS (ENSMUSG00000106581.1) miRNA-promoter-TSS (ENSMUSG00000106581.1) -973 ENSMUSG00000106581.1 ENSMUSG00000106581 ENSMUST00000200187 Mir7042 miRNA Interval_172062 chr9 124150486 124150761 + 0 NA Intergenic Intergenic 23939 ENSMUSG00000079227.10 ENSMUSG00000079227 ENSMUST00000097855 Ccr5 protein_coding Interval_138474 chr6 88502811 88503463 + 0 NA promoter-TSS (ENSMUSG00000107659.1) antisense-promoter-TSS (ENSMUSG00000107659.1) -468 ENSMUSG00000107659.1 ENSMUSG00000107659 ENSMUST00000203181 Gm44170 antisense Interval_66190 chr16 32238080 32238625 + 0 NA intron (ENSMUSG00000035764.5, intron 2 of 2) protein_coding-intron (ENSMUSG00000035764.5, intron 2 of 2) 5503 ENSMUSG00000080440.1 ENSMUSG00000080440 ENSMUST00000116790 Gm25848 snoRNA Interval_123446 chr5 32624810 32625028 + 0 NA intron (ENSMUSG00000014932.15, intron 1 of 11) protein_coding-intron (ENSMUSG00000014932.15, intron 1 of 11) -4923 ENSMUSG00000107018.1 ENSMUSG00000107018 ENSMUST00000200773 Gm43694 TEC Interval_10536 chr1 171564235 171564591 + 0 NA intron (ENSMUSG00000004709.14, intron 1 of 6) protein_coding-intron (ENSMUSG00000004709.14, intron 1 of 8) -14650 ENSMUSG00000004709.14 ENSMUSG00000004709 ENSMUST00000195804 Cd244a protein_coding Interval_101643 chr3 8469101 8470657 + 0 NA Intergenic Intergenic -6844 ENSMUSG00000102463.1 ENSMUSG00000102463 ENSMUST00000194834 1700003N22Rik processed_pseudogene Interval_11475 chr1 182092322 182092599 + 0 NA Intergenic Intergenic 21057 ENSMUSG00000103379.1 ENSMUSG00000103379 ENSMUST00000193768 Gm37177 processed_pseudogene Interval_62437 chr15 92704318 92705495 + 0 NA intron (ENSMUSG00000115858.1, intron 1 of 1) protein_coding-intron (ENSMUSG00000036218.16, intron 3 of 7) 1049 ENSMUSG00000115858.1 ENSMUSG00000115858 ENSMUST00000230757 4930588J15Rik antisense Interval_114145 chr4 64569042 64569238 + 0 NA Intergenic Intergenic 124410 ENSMUSG00000077214.1 ENSMUSG00000077214 ENSMUST00000104026 Gm23950 snoRNA Interval_136883 chr6 62832762 62832998 + 0 NA Intergenic Intergenic 12772 ENSMUSG00000108007.1 ENSMUSG00000108007 ENSMUST00000204025 Gm18540 processed_pseudogene Interval_42303 chr13 11925501 11926033 + 0 NA intron (ENSMUSG00000021313.16, intron 2 of 2) protein_coding-intron (ENSMUSG00000021313.16, intron 2 of 104) -13791 ENSMUSG00000098110.1 ENSMUSG00000098110 ENSMUST00000182176 Gm26956 processed_pseudogene Interval_30770 chr11 96365303 96367273 + 0 NA promoter-TSS (ENSMUSG00000018973.2) protein_coding-promoter-TSS (ENSMUSG00000018973.2) 30 ENSMUSG00000018973.2 ENSMUSG00000018973 ENSMUST00000123805 Hoxb1 protein_coding Interval_91139 chr2 35404747 35405415 + 0 NA intron (ENSMUSG00000035778.17, intron 5 of 5) protein_coding-intron (ENSMUSG00000035778.17, intron 6 of 6) -7906 ENSMUSG00000079421.8 ENSMUSG00000079421 ENSMUST00000113009 4930402F06Rik protein_coding Interval_166003 chr9 55332187 55333200 + 0 NA promoter-TSS (ENSMUSG00000032313.11) protein_coding-promoter-TSS (ENSMUSG00000032313.11) -508 ENSMUSG00000032313.11 ENSMUSG00000032313 ENSMUST00000130465 Tmem266 protein_coding Interval_105153 chr3 82875737 82877431 + 0 NA promoter-TSS (ENSMUSG00000033882.15) protein_coding-promoter-TSS (ENSMUSG00000033882.15) -162 ENSMUSG00000086273.7 ENSMUSG00000086273 ENSMUST00000131274 Rbm46os antisense Interval_163060 chr9 14900466 14901239 + 0 NA TTS (ENSMUSG00000031933.17) protein_coding-TTS (ENSMUSG00000031933.17) 2902 ENSMUSG00000031933.17 ENSMUSG00000031933 ENSMUST00000148155 Izumo1r protein_coding Interval_128129 chr5 111178347 111179165 + 0 NA intron (ENSMUSG00000033209.17, intron 6 of 23) protein_coding-intron (ENSMUSG00000033209.17, intron 6 of 23) -18384 ENSMUSG00000105027.1 ENSMUSG00000105027 ENSMUST00000197532 Gm43676 TEC Interval_8581 chr1 143380349 143380576 + 0 NA Intergenic Intergenic -260202 ENSMUSG00000033849.3 ENSMUSG00000033849 ENSMUST00000038252 B3galt2 protein_coding Interval_110516 chr4 3443886 3444082 + 0 NA Intergenic Intergenic -11718 ENSMUSG00000081711.1 ENSMUSG00000081711 ENSMUST00000120165 Gm11785 processed_pseudogene Interval_165476 chr9 48535978 48536371 + 0 NA Intergenic Intergenic -29114 ENSMUSG00000080401.1 ENSMUSG00000080401 ENSMUST00000116751 Gm23653 miRNA Interval_27603 chr11 68993759 68994864 + 0 NA promoter-TSS (ENSMUSG00000020899.16) protein_coding-promoter-TSS (ENSMUSG00000020899.16) -1691 ENSMUSG00000084522.1 ENSMUSG00000084522 ENSMUST00000122573 Gm25819 snRNA Interval_12598 chr10 3805267 3805626 + 0 NA intron (ENSMUSG00000040624.18, intron 2 of 7) protein_coding-intron (ENSMUSG00000040624.18, intron 2 of 16) -29433 ENSMUSG00000040624.18 ENSMUSG00000040624 ENSMUST00000141367 Plekhg1 protein_coding Interval_97482 chr2 137115975 137117780 + 0 NA promoter-TSS (ENSMUSG00000027276.7) protein_coding-promoter-TSS (ENSMUSG00000027276.7) -30928 ENSMUSG00000027276.7 ENSMUSG00000027276 ENSMUST00000133640 Jag1 protein_coding Interval_69374 chr16 92545640 92545856 + 0 NA Intergenic Intergenic 7395 ENSMUSG00000116709.1 ENSMUSG00000116709 ENSMUST00000232213 Gm49722 lincRNA Interval_138293 chr6 86977638 86977869 + 0 NA TTS (ENSMUSG00000107688.1) sense_intronic-TTS (ENSMUSG00000107688.1) 1224 ENSMUSG00000107688.1 ENSMUSG00000107688 ENSMUST00000205212 Gm44091 sense_intronic Interval_49416 chr13 111835963 111836178 + 0 NA Intergenic Intergenic 16552 ENSMUSG00000086861.1 ENSMUSG00000086861 ENSMUST00000149661 Gm15325 lincRNA Interval_40067 chr12 100986761 100987030 + 0 NA intron (ENSMUSG00000113634.1, intron 1 of 3) protein_coding-intron (ENSMUSG00000021182.16, intron 3 of 29) -20092 ENSMUSG00000113634.1 ENSMUSG00000113634 ENSMUST00000223241 Gm36756 antisense Interval_78211 chr18 10173989 10175121 + 0 NA intron (ENSMUSG00000024290.9, intron 1 of 13) protein_coding-intron (ENSMUSG00000024290.9, intron 1 of 32) 20226 ENSMUSG00000117510.1 ENSMUSG00000117510 ENSMUST00000234511 Gm50032 processed_pseudogene Interval_53053 chr14 53995162 53996162 + 0 NA Intergenic Intergenic -5297 ENSMUSG00000105823.1 ENSMUSG00000105823 ENSMUST00000198551 Trdv3 TR_V_pseudogene Interval_142947 chr6 147217282 147218087 + 0 NA Intergenic Intergenic 26117 ENSMUSG00000086021.1 ENSMUSG00000086021 ENSMUST00000153521 Gm15767 lincRNA Interval_85355 chr19 25143246 25144558 + 0 NA intron (ENSMUSG00000052085.7, intron 24 of 47) protein_coding-intron (ENSMUSG00000052085.7, intron 24 of 47) 22314 ENSMUSG00000065634.1 ENSMUSG00000065634 ENSMUST00000083700 Gm24252 snoRNA Interval_34434 chr12 4132912 4134555 + 0 NA promoter-TSS (ENSMUSG00000020654.15) protein_coding-promoter-TSS (ENSMUSG00000020654.15) 630 ENSMUSG00000020654.15 ENSMUSG00000020654 ENSMUST00000127110 Adcy3 protein_coding Interval_76200 chr17 76956242 76956562 + 0 NA Intergenic Intergenic 19762 ENSMUSG00000117388.1 ENSMUSG00000117388 ENSMUST00000235006 Gm6496 processed_pseudogene Interval_132809 chr5 147997166 147998056 + 0 NA intron (ENSMUSG00000029651.16, intron 1 of 14) protein_coding-intron (ENSMUSG00000029651.16, intron 1 of 14) -40445 ENSMUSG00000085565.1 ENSMUSG00000085565 ENSMUST00000138406 Gm15721 lincRNA Interval_35553 chr12 24746352 24747432 + 0 NA Intergenic Intergenic -13333 ENSMUSG00000113062.1 ENSMUSG00000113062 ENSMUST00000221016 Gm48895 processed_pseudogene Interval_12403 chr1 193102078 193102391 + 0 NA intron (ENSMUSG00000016181.9, intron 2 of 3) protein_coding-intron (ENSMUSG00000016181.9, intron 4 of 4) 27973 ENSMUSG00000016181.9 ENSMUSG00000016181 ENSMUST00000194124 Utp25 protein_coding Interval_18064 chr10 82003036 82003246 + 0 NA Intergenic Intergenic -5238 ENSMUSG00000111985.1 ENSMUSG00000111985 ENSMUST00000218202 Gm8290 processed_pseudogene Interval_96691 chr2 127207976 127208815 + 0 NA promoter-TSS (ENSMUSG00000044145.2) protein_coding-promoter-TSS (ENSMUSG00000044145.2) -141 ENSMUSG00000044145.2 ENSMUSG00000044145 ENSMUST00000150956 1810024B03Rik protein_coding Interval_68169 chr16 66524330 66525028 + 0 NA Intergenic Intergenic -132439 ENSMUSG00000092599.1 ENSMUSG00000092599 ENSMUST00000174502 1700010K23Rik antisense Interval_25733 chr11 51212853 51213228 + 0 NA intron (ENSMUSG00000086646.7, intron 1 of 3) lincRNA-intron (ENSMUSG00000086646.7, intron 1 of 3) 7378 ENSMUSG00000086646.7 ENSMUSG00000086646 ENSMUST00000137964 Platr20 lincRNA Interval_49931 chr13 118437742 118437955 + 0 NA Intergenic Intergenic -51167 ENSMUSG00000021731.10 ENSMUSG00000021731 ENSMUST00000225170 Mrps30 protein_coding Interval_158309 chr8 80997340 80997627 + 0 NA TTS (ENSMUSG00000038250.9) protein_coding-TTS (ENSMUSG00000038250.9) 17430 ENSMUSG00000038250.9 ENSMUSG00000038250 ENSMUST00000211538 Usp38 protein_coding Interval_157185 chr8 67307097 67307573 + 0 NA Intergenic Intergenic -3352 ENSMUSG00000110632.1 ENSMUSG00000110632 ENSMUST00000213041 Gm45880 processed_pseudogene Interval_95266 chr2 105376869 105377387 + 0 NA intron (ENSMUSG00000055312.2, intron 2 of 2) protein_coding-intron (ENSMUSG00000055312.2, intron 3 of 3) 18220 ENSMUSG00000005973.6 ENSMUSG00000005973 ENSMUST00000127019 Rcn1 protein_coding Interval_166904 chr9 63837011 63837287 + 0 NA Intergenic Intergenic -35352 ENSMUSG00000111137.1 ENSMUSG00000111137 ENSMUST00000215986 Gm2553 processed_pseudogene Interval_170901 chr9 111786024 111786330 + 0 NA Intergenic Intergenic -95848 ENSMUSG00000032502.8 ENSMUSG00000032502 ENSMUST00000162345 Stac protein_coding Interval_75374 chr17 66221168 66221539 + 0 NA Intergenic Intergenic 6674 ENSMUSG00000117246.1 ENSMUSG00000117246 ENSMUST00000232894 Gm17891 processed_pseudogene Interval_131386 chr5 136846528 136847440 + 0 NA intron (ENSMUSG00000004415.15, intron 2 of 4) protein_coding-intron (ENSMUSG00000004415.15, intron 2 of 12) -8675 ENSMUSG00000004415.15 ENSMUSG00000004415 ENSMUST00000140245 Col26a1 protein_coding Interval_56421 chr14 118647487 118649258 + 0 NA intron (ENSMUSG00000032849.14, intron 3 of 29) protein_coding-intron (ENSMUSG00000032849.14, intron 4 of 30) 51120 ENSMUSG00000032849.14 ENSMUSG00000032849 ENSMUST00000227480 Abcc4 protein_coding Interval_113393 chr4 54243662 54243932 + 0 NA Intergenic Intergenic -7921 ENSMUSG00000083624.1 ENSMUSG00000083624 ENSMUST00000117623 Gm12469 processed_pseudogene Interval_72155 chr17 28316653 28317038 + 0 NA promoter-TSS (ENSMUSG00000007570.16) protein_coding-promoter-TSS (ENSMUSG00000007570.16) 2757 ENSMUSG00000117027.1 ENSMUSG00000117027 ENSMUST00000232919 Gm49886 antisense Interval_154015 chr8 11892593 11893640 + 0 NA intron (ENSMUSG00000109772.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000109772.1, intron 1 of 1) 18957 ENSMUSG00000109772.1 ENSMUSG00000109772 ENSMUST00000210446 Gm39132 lincRNA Interval_74796 chr17 56593544 56593933 + 0 NA promoter-TSS (ENSMUSG00000071054.12) protein_coding-promoter-TSS (ENSMUSG00000071054.12) -12002 ENSMUSG00000071054.12 ENSMUSG00000071054 ENSMUST00000183318 Safb protein_coding Interval_29899 chr11 87610871 87611303 + 0 NA exon (ENSMUSG00000018401.17, exon 15 of 18) protein_coding-exon (ENSMUSG00000018401.17, exon 15 of 18) -6077 ENSMUSG00000070345.3 ENSMUSG00000070345 ENSMUST00000093956 Hsf5 protein_coding Interval_16620 chr10 66357454 66357672 + 0 NA Intergenic Intergenic -125990 ENSMUSG00000077439.1 ENSMUSG00000077439 ENSMUST00000104251 Gm22594 snoRNA Interval_142327 chr6 140655665 140656051 + 0 NA TTS (ENSMUSG00000030232.18) protein_coding-TTS (ENSMUSG00000030232.18) 19120 ENSMUSG00000030232.18 ENSMUSG00000030232 ENSMUST00000160772 Aebp2 protein_coding Interval_143136 chr7 3601012 3601791 + 0 NA intron (ENSMUSG00000108644.1, intron 1 of 3) lincRNA-intron (ENSMUSG00000108644.1, intron 1 of 3) 2749 ENSMUSG00000108644.1 ENSMUSG00000108644 ENSMUST00000206503 Gm44920 lincRNA Interval_74623 chr17 53888459 53889410 + 0 NA Intergenic Intergenic 2001 ENSMUSG00000105235.1 ENSMUSG00000105235 ENSMUST00000198911 Hcfc1r1-ps1 processed_pseudogene Interval_155518 chr8 34068965 34069580 + 0 NA Intergenic Intergenic 14650 ENSMUSG00000054618.8 ENSMUSG00000054618 ENSMUST00000149618 Gm9951 lincRNA Interval_113996 chr4 62352505 62352855 + 0 NA intron (ENSMUSG00000066151.12, intron 1 of 3) protein_coding-intron (ENSMUSG00000066151.12, intron 1 of 27) -14185 ENSMUSG00000066151.12 ENSMUSG00000066151 ENSMUST00000131977 Fkbp15 protein_coding Interval_89320 chr2 19297303 19298054 + 0 NA intron (ENSMUSG00000037683.14, intron 16 of 18) protein_coding-intron (ENSMUSG00000037683.14, intron 16 of 18) -47160 ENSMUSG00000087674.7 ENSMUSG00000087674 ENSMUST00000136456 4930447M23Rik lincRNA Interval_156045 chr8 43186793 43187776 + 0 NA TTS (ENSMUSG00000091490.3) protein_coding-TTS (ENSMUSG00000091490.3) 2238 ENSMUSG00000091490.3 ENSMUSG00000091490 ENSMUST00000211228 Triml2 protein_coding Interval_107538 chr3 108361894 108363024 + 0 NA TTS (ENSMUSG00000068747.14) protein_coding-TTS (ENSMUSG00000068747.14) 908 ENSMUSG00000078601.4 ENSMUSG00000078601 ENSMUST00000125412 Gm12525 lincRNA Interval_161880 chr8 123398826 123399553 + 0 NA promoter-TSS (ENSMUSG00000001472.17) protein_coding-promoter-TSS (ENSMUSG00000001472.17) -141 ENSMUSG00000001472.17 ENSMUSG00000001472 ENSMUST00000212996 Tcf25 protein_coding Interval_170199 chr9 106147707 106149871 + 0 NA intron (ENSMUSG00000086296.2, intron 1 of 6) antisense-intron (ENSMUSG00000086296.2, intron 1 of 6) -5335 ENSMUSG00000065407.1 ENSMUSG00000065407 ENSMUST00000083473 Mir135a-1 miRNA Interval_149308 chr7 97340973 97341803 + 0 NA intron (ENSMUSG00000044952.5, intron 1 of 1) protein_coding-intron (ENSMUSG00000044952.5, intron 1 of 1) 9061 ENSMUSG00000044952.5 ENSMUSG00000044952 ENSMUST00000054107 Kctd21 protein_coding Interval_107228 chr3 104764886 104765446 + 0 NA intron (ENSMUSG00000105195.1, intron 2 of 2) processed_transcript-intron (ENSMUSG00000105195.1, intron 2 of 2) 8104 ENSMUSG00000105195.1 ENSMUSG00000105195 ENSMUST00000199762 Gm43584 processed_transcript Interval_7436 chr1 131308326 131309110 + 0 NA intron (ENSMUSG00000026425.15, intron 7 of 10) protein_coding-intron (ENSMUSG00000026425.15, intron 18 of 22) 24352 ENSMUSG00000026425.15 ENSMUSG00000026425 ENSMUST00000187273 Srgap2 protein_coding Interval_116778 chr4 117258532 117258934 + 0 NA intron (ENSMUSG00000048772.15, intron 2 of 3) protein_coding-intron (ENSMUSG00000048772.15, intron 1 of 2) 6671 ENSMUSG00000048772.15 ENSMUSG00000048772 ENSMUST00000145836 Tmem53 protein_coding Interval_137596 chr6 74353586 74354318 + 0 NA Intergenic Intergenic 13002 ENSMUSG00000093964.1 ENSMUSG00000093964 ENSMUST00000177723 Gm26179 snoRNA Interval_4376 chr1 73500489 73501142 + 0 NA Intergenic Intergenic -11231 ENSMUSG00000100044.1 ENSMUSG00000100044 ENSMUST00000185703 Gm9553 processed_pseudogene Interval_167187 chr9 66031082 66031355 + 0 NA TTS (ENSMUSG00000032384.16) protein_coding-TTS (ENSMUSG00000032384.16) -29004 ENSMUSG00000032383.7 ENSMUSG00000032383 ENSMUST00000034947 Ppib protein_coding Interval_76732 chr17 83736845 83737056 + 0 NA intron (ENSMUSG00000055817.18, intron 1 of 2) protein_coding-intron (ENSMUSG00000055817.18, intron 3 of 16) 7786 ENSMUSG00000055817.18 ENSMUSG00000055817 ENSMUST00000175920 Mta3 protein_coding Interval_111472 chr4 21940715 21941292 + 0 NA intron (ENSMUSG00000028246.13, intron 2 of 3) protein_coding-intron (ENSMUSG00000028246.13, intron 2 of 5) -17453 ENSMUSG00000028246.13 ENSMUSG00000028246 ENSMUST00000155220 Faxc protein_coding Interval_30739 chr11 96202562 96204260 + 0 NA Intergenic Intergenic -3100 ENSMUSG00000099133.1 ENSMUSG00000099133 ENSMUST00000184648 Gm27605 misc_RNA Interval_11226 chr1 180292933 180293196 + 0 NA Intergenic Intergenic 35120 ENSMUSG00000055676.4 ENSMUSG00000055676 ENSMUST00000192714 Gm5069 transcribed_processed_pseudogene Interval_165633 chr9 50548211 50548418 + 0 NA intron (ENSMUSG00000032066.9, intron 2 of 11) protein_coding-intron (ENSMUSG00000032066.9, intron 2 of 11) 6867 ENSMUSG00000032066.9 ENSMUSG00000032066 ENSMUST00000119103 Bco2 protein_coding Interval_34996 chr12 16542475 16542953 + 0 NA intron (ENSMUSG00000020593.16, intron 19 of 21) protein_coding-intron (ENSMUSG00000020593.16, intron 18 of 20) 68252 ENSMUSG00000020593.16 ENSMUSG00000020593 ENSMUST00000221146 Lpin1 protein_coding Interval_101982 chr3 14381466 14382338 + 0 NA Intergenic Intergenic 2498 ENSMUSG00000103626.1 ENSMUSG00000103626 ENSMUST00000195492 Gm37358 processed_pseudogene Interval_122216 chr5 20114912 20115613 + 0 NA promoter-TSS (ENSMUSG00000077171.1) snoRNA-promoter-TSS (ENSMUSG00000077171.1) -815 ENSMUSG00000077171.1 ENSMUSG00000077171 ENSMUST00000103983 Gm25761 snoRNA Interval_165815 chr9 53397737 53399066 + 0 NA intron (ENSMUSG00000034487.4, intron 7 of 7) protein_coding-intron (ENSMUSG00000034487.4, intron 7 of 7) 2485 ENSMUSG00000098362.1 ENSMUSG00000098362 ENSMUST00000184489 Mir130c miRNA Interval_127010 chr5 99541154 99541628 + 0 NA intron (ENSMUSG00000089809.9, intron 3 of 16) protein_coding-intron (ENSMUSG00000089809.9, intron 2 of 3) -30709 ENSMUSG00000090006.1 ENSMUSG00000090006 ENSMUST00000160088 Gm16227 sense_intronic Interval_1136 chr1 16021340 16022644 + 0 NA Intergenic Intergenic -31343 ENSMUSG00000100652.1 ENSMUSG00000100652 ENSMUST00000185778 Gm7634 processed_pseudogene Interval_77073 chr17 86230214 86231199 + 0 NA intron (ENSMUSG00000045038.14, intron 1 of 14) protein_coding-intron (ENSMUSG00000045038.14, intron 2 of 15) 55131 ENSMUSG00000117546.1 ENSMUSG00000117546 ENSMUST00000234087 AC154542.1 TEC Interval_143439 chr7 6798868 6799383 + 0 NA intron (ENSMUSG00000051527.11, intron 2 of 7) protein_coding-intron (ENSMUSG00000051527.11, intron 2 of 7) -4462 ENSMUSG00000092815.1 ENSMUSG00000092815 ENSMUST00000175074 Mir3099 miRNA Interval_166982 chr9 64294685 64295181 + 0 NA promoter-TSS (ENSMUSG00000088254.1) scaRNA-promoter-TSS (ENSMUSG00000088254.1) -998 ENSMUSG00000088254.1 ENSMUSG00000088254 ENSMUST00000157629 Gm24289 scaRNA Interval_97901 chr2 145260348 145260975 + 0 NA intron (ENSMUSG00000063873.10, intron 2 of 16) protein_coding-intron (ENSMUSG00000063873.10, intron 1 of 15) -76987 ENSMUSG00000087158.1 ENSMUSG00000087158 ENSMUST00000145579 Gm14093 sense_intronic Interval_16178 chr10 61241949 61242575 + 0 NA intron (ENSMUSG00000059901.12, intron 4 of 21) protein_coding-intron (ENSMUSG00000059901.12, intron 4 of 21) 30980 ENSMUSG00000059901.12 ENSMUSG00000059901 ENSMUST00000120336 Adamts14 protein_coding Interval_87470 chr19 52643855 52645000 + 0 NA Intergenic Intergenic -278815 ENSMUSG00000117896.1 ENSMUSG00000117896 ENSMUST00000237126 AA387883 lincRNA Interval_154115 chr8 12841593 12842667 + 0 NA intron (ENSMUSG00000031441.15, intron 17 of 27) protein_coding-intron (ENSMUSG00000031441.15, intron 17 of 29) -5725 ENSMUSG00000031441.15 ENSMUSG00000031441 ENSMUST00000139545 Atp11a protein_coding Interval_17856 chr10 80433019 80434460 + 0 NA promoter-TSS (ENSMUSG00000020167.14) protein_coding-promoter-TSS (ENSMUSG00000020167.14) -2754 ENSMUSG00000020167.14 ENSMUSG00000020167 ENSMUST00000156244 Tcf3 protein_coding Interval_167294 chr9 67099506 67100093 + 0 NA Intergenic Intergenic -2501 ENSMUSG00000111825.1 ENSMUSG00000111825 ENSMUST00000213227 Gm10646 lincRNA Interval_91137 chr2 35397356 35399434 + 0 NA Intergenic Intergenic -1220 ENSMUSG00000079421.8 ENSMUSG00000079421 ENSMUST00000113009 4930402F06Rik protein_coding Interval_164140 chr9 31948508 31949137 + 0 NA exon (ENSMUSG00000111166.1, exon 1 of 1) processed_pseudogene-exon (ENSMUSG00000111166.1, exon 1 of 1) 476 ENSMUSG00000111166.1 ENSMUSG00000111166 ENSMUST00000213734 Tpi-rs4 processed_pseudogene Interval_153691 chr8 4633416 4633758 + 0 NA Intergenic Intergenic -7879 ENSMUSG00000109489.1 ENSMUSG00000109489 ENSMUST00000208382 Gm7451 processed_pseudogene Interval_1774 chr1 33714524 33715279 + 0 NA Intergenic Intergenic -4986 ENSMUSG00000004768.14 ENSMUSG00000004768 ENSMUST00000132066 Rab23 protein_coding Interval_89074 chr2 15629777 15630327 + 0 NA intron (ENSMUSG00000075520.5, intron 9 of 38) protein_coding-intron (ENSMUSG00000075520.5, intron 9 of 38) 98939 ENSMUSG00000103356.1 ENSMUSG00000103356 ENSMUST00000192668 Gm37595 TEC Interval_59415 chr15 52712037 52713121 + 0 NA exon (ENSMUSG00000038622.8, exon 1 of 4) protein_coding-exon (ENSMUSG00000038622.8, exon 1 of 4) 171 ENSMUSG00000038622.8 ENSMUSG00000038622 ENSMUST00000037115 Med30 protein_coding Interval_117385 chr4 123376200 123376879 + 0 NA intron (ENSMUSG00000028649.21, intron 78 of 93) protein_coding-intron (ENSMUSG00000028649.21, intron 77 of 92) -33736 ENSMUSG00000032726.12 ENSMUSG00000032726 ENSMUST00000040496 Bmp8a protein_coding Interval_62142 chr15 87963315 87963848 + 0 NA Intergenic Intergenic -3835 ENSMUSG00000116061.1 ENSMUSG00000116061 ENSMUST00000229118 Gm49472 lincRNA Interval_154321 chr8 14393134 14393400 + 0 NA intron (ENSMUSG00000047495.15, intron 1 of 10) protein_coding-intron (ENSMUSG00000047495.15, intron 2 of 14) 43089 ENSMUSG00000106670.1 ENSMUSG00000106670 ENSMUST00000199602 Gm44347 miRNA Interval_9721 chr1 161270727 161272022 + 0 NA Intergenic Intergenic -20212 ENSMUSG00000026701.15 ENSMUSG00000026701 ENSMUST00000130867 Prdx6 protein_coding Interval_100760 chr2 172399487 172400429 + 0 NA intron (ENSMUSG00000074570.14, intron 1 of 5) protein_coding-intron (ENSMUSG00000074570.14, intron 1 of 4) 6057 ENSMUSG00000074570.14 ENSMUSG00000074570 ENSMUST00000228775 Cass4 protein_coding Interval_161940 chr8 123915137 123915527 + 0 NA exon (ENSMUSG00000039509.8, exon 18 of 26) protein_coding-exon (ENSMUSG00000039509.8, exon 18 of 26) 303 ENSMUSG00000039509.8 ENSMUSG00000039509 ENSMUST00000212133 Nup133 protein_coding Interval_158834 chr8 86978900 86979219 + 0 NA Intergenic Intergenic -13440 ENSMUSG00000088261.1 ENSMUSG00000088261 ENSMUST00000157636 Gm24781 snoRNA Interval_63819 chr16 3735416 3735633 + 0 NA Intergenic Intergenic 5014 ENSMUSG00000095834.2 ENSMUSG00000095834 ENSMUST00000179882 Tdgf1-ps1 processed_pseudogene Interval_21047 chr10 125264963 125266100 + 0 NA intron (ENSMUSG00000020102.15, intron 3 of 5) protein_coding-intron (ENSMUSG00000020102.15, intron 4 of 6) -43381 ENSMUSG00000109803.1 ENSMUSG00000109803 ENSMUST00000209665 Gm45604 antisense Interval_103032 chr3 34642205 34642966 + 0 NA promoter-TSS (ENSMUSG00000104901.1) TEC-promoter-TSS (ENSMUSG00000104901.1) -679 ENSMUSG00000104901.1 ENSMUSG00000104901 ENSMUST00000199482 Gm42692 TEC Interval_107764 chr3 113629446 113630944 + 0 NA promoter-TSS (ENSMUSG00000027981.14) protein_coding-promoter-TSS (ENSMUSG00000027981.14) -295 ENSMUSG00000027981.14 ENSMUSG00000027981 ENSMUST00000127068 Rnpc3 protein_coding Interval_54358 chr14 67908172 67909397 + 0 NA intron (ENSMUSG00000044447.5, intron 1 of 17) protein_coding-intron (ENSMUSG00000044447.5, intron 1 of 51) -49039 ENSMUSG00000098866.1 ENSMUSG00000098866 ENSMUST00000183732 Mir6539 miRNA Interval_54362 chr14 67927808 67928733 + 0 NA intron (ENSMUSG00000044447.5, intron 1 of 17) protein_coding-intron (ENSMUSG00000044447.5, intron 1 of 51) -68525 ENSMUSG00000098866.1 ENSMUSG00000098866 ENSMUST00000183732 Mir6539 miRNA Interval_164475 chr9 37328571 37329348 + 0 NA TTS (ENSMUSG00000111481.1) TEC-TTS (ENSMUSG00000111481.1) 5470 ENSMUSG00000111481.1 ENSMUSG00000111481 ENSMUST00000217345 Gm47652 TEC Interval_22510 chr11 11253641 11253862 + 0 NA intron (ENSMUSG00000050830.17, intron 3 of 4) protein_coding-intron (ENSMUSG00000050830.17, intron 2 of 3) -58682 ENSMUSG00000082875.1 ENSMUSG00000082875 ENSMUST00000117333 Gm12598 processed_pseudogene Interval_164871 chr9 42652784 42652978 + 0 NA intron (ENSMUSG00000032017.14, intron 8 of 20) protein_coding-intron (ENSMUSG00000032017.14, intron 6 of 18) -132050 ENSMUSG00000093745.1 ENSMUSG00000093745 ENSMUST00000176676 Gm24420 misc_RNA Interval_116320 chr4 109762790 109763290 + 0 NA intron (ENSMUSG00000010517.7, intron 7 of 18) protein_coding-intron (ENSMUSG00000010517.7, intron 7 of 18) -8223 ENSMUSG00000083995.1 ENSMUSG00000083995 ENSMUST00000120597 Gm12808 processed_pseudogene Interval_93845 chr2 77401247 77402330 + 0 NA Intergenic Intergenic -60881 ENSMUSG00000085845.7 ENSMUSG00000085845 ENSMUST00000126572 Gm13944 antisense Interval_59479 chr15 53785370 53785684 + 0 NA intron (ENSMUSG00000058656.13, intron 2 of 4) protein_coding-intron (ENSMUSG00000058656.13, intron 2 of 4) -99379 ENSMUSG00000072584.2 ENSMUSG00000072584 ENSMUST00000100666 Gm7489 protein_coding Interval_134453 chr6 28862374 28862610 + 0 NA intron (ENSMUSG00000001424.14, intron 1 of 2) protein_coding-intron (ENSMUSG00000001424.14, intron 16 of 23) -32147 ENSMUSG00000049939.6 ENSMUSG00000049939 ENSMUST00000062304 Lrrc4 protein_coding Interval_72485 chr17 30114791 30114999 + 0 NA intron (ENSMUSG00000044477.12, intron 2 of 5) protein_coding-intron (ENSMUSG00000044477.12, intron 2 of 4) -21295 ENSMUSG00000044477.12 ENSMUSG00000044477 ENSMUST00000234091 Zfand3 protein_coding Interval_159492 chr8 95061530 95061905 + 0 NA exon (ENSMUSG00000031786.7, exon 6 of 18) protein_coding-exon (ENSMUSG00000031786.7, exon 6 of 18) 6606 ENSMUSG00000031786.7 ENSMUSG00000031786 ENSMUST00000212980 Drc7 protein_coding Interval_69700 chr16 95658769 95659327 + 0 NA Intergenic Intergenic -43407 ENSMUSG00000022895.16 ENSMUSG00000022895 ENSMUST00000233578 Ets2 protein_coding Interval_55045 chr14 77482890 77483480 + 0 NA intron (ENSMUSG00000067973.11, intron 3 of 4) protein_coding-intron (ENSMUSG00000022012.9, intron 5 of 18) 18255 ENSMUSG00000067973.11 ENSMUSG00000067973 ENSMUST00000163416 Gm6994 antisense Interval_58401 chr15 34170653 34171657 + 0 NA Intergenic Intergenic -31779 ENSMUSG00000089072.1 ENSMUSG00000089072 ENSMUST00000158447 Gm24500 snoRNA Interval_21710 chr11 3855532 3855806 + 0 NA intron (ENSMUSG00000020435.17, intron 1 of 2) protein_coding-intron (ENSMUSG00000020435.17, intron 1 of 13) -17286 ENSMUSG00000084077.1 ENSMUSG00000084077 ENSMUST00000121172 Gm11952 processed_pseudogene Interval_14784 chr10 39811324 39812091 + 0 NA intron (ENSMUSG00000019841.15, intron 10 of 32) protein_coding-intron (ENSMUSG00000019841.15, intron 9 of 31) -58839 ENSMUSG00000081608.1 ENSMUSG00000081608 ENSMUST00000122161 Gm16210 processed_pseudogene Interval_65802 chr16 28939785 28940214 + 0 NA Intergenic Intergenic 11356 ENSMUSG00000116861.1 ENSMUSG00000116861 ENSMUST00000232466 Gm8253 processed_pseudogene Interval_33272 chr11 115590244 115591013 + 0 NA intron (ENSMUSG00000020740.13, intron 7 of 16) protein_coding-intron (ENSMUSG00000020740.13, intron 7 of 16) -11028 ENSMUSG00000089476.1 ENSMUSG00000089476 ENSMUST00000158851 Gm25364 snRNA Interval_98113 chr2 148184130 148184304 + 0 NA Intergenic Intergenic 33067 ENSMUSG00000089458.1 ENSMUSG00000089458 ENSMUST00000158833 Gm24221 snoRNA Interval_163258 chr9 20201867 20202848 + 0 NA Intergenic Intergenic 6994 ENSMUSG00000089516.1 ENSMUSG00000089516 ENSMUST00000158891 Gm26290 snRNA Interval_163506 chr9 21767957 21769983 + 0 NA exon (ENSMUSG00000032194.9, exon 12 of 12) protein_coding-exon (ENSMUSG00000032194.9, exon 12 of 12) -8688 ENSMUSG00000074476.6 ENSMUSG00000074476 ENSMUST00000214149 Spc24 protein_coding Interval_44602 chr13 46644030 46646270 + 0 NA intron (ENSMUSG00000021373.16, intron 2 of 2) protein_coding-intron (ENSMUSG00000021373.16, intron 11 of 12) -25370 ENSMUSG00000114596.1 ENSMUSG00000114596 ENSMUST00000225040 Gm47523 antisense Interval_91908 chr2 51193502 51194196 + 0 NA Intergenic Intergenic -25533 ENSMUSG00000100496.1 ENSMUSG00000100496 ENSMUST00000191519 Gm28639 lincRNA Interval_15688 chr10 53566282 53566666 + 0 NA intron (ENSMUSG00000058298.10, intron 8 of 13) protein_coding-intron (ENSMUSG00000058298.10, intron 8 of 13) -3195 ENSMUSG00000112530.1 ENSMUSG00000112530 ENSMUST00000218795 Gm47738 antisense Interval_58038 chr15 27045832 27046062 + 0 NA Intergenic Intergenic 15919 ENSMUSG00000088191.1 ENSMUSG00000088191 ENSMUST00000157566 Gm23903 snoRNA Interval_59252 chr15 49967032 49967449 + 0 NA Intergenic Intergenic 53858 ENSMUSG00000115446.1 ENSMUSG00000115446 ENSMUST00000227486 Gm49186 processed_pseudogene Interval_124402 chr5 45529249 45530157 + 0 NA TTS (ENSMUSG00000015879.8) protein_coding-TTS (ENSMUSG00000015879.8) -1369 ENSMUSG00000105745.1 ENSMUSG00000105745 ENSMUST00000199190 Gm42521 TEC Interval_74958 chr17 58262388 58262889 + 0 NA intron (ENSMUSG00000038048.8, intron 13 of 23) protein_coding-intron (ENSMUSG00000038048.8, intron 13 of 23) -199687 ENSMUSG00000117281.1 ENSMUSG00000117281 ENSMUST00000233462 Gm49848 processed_pseudogene Interval_139655 chr6 105676995 105678253 + 0 NA promoter-TSS (ENSMUSG00000064293.14) protein_coding-promoter-TSS (ENSMUSG00000064293.14) -43 ENSMUSG00000085067.2 ENSMUSG00000085067 ENSMUST00000142962 Gm15631 lincRNA Interval_82145 chr18 68030217 68030977 + 0 NA intron (ENSMUSG00000024544.9, intron 1 of 5) protein_coding-intron (ENSMUSG00000024544.9, intron 1 of 5) 87777 ENSMUSG00000117891.1 ENSMUSG00000117891 ENSMUST00000236198 Gm41764 antisense Interval_139825 chr6 109276755 109277514 + 0 NA Intergenic Intergenic 62892 ENSMUSG00000107641.1 ENSMUSG00000107641 ENSMUST00000205246 Gm32858 processed_pseudogene Interval_112280 chr4 39856010 39856403 + 0 NA Intergenic Intergenic -9481 ENSMUSG00000088339.1 ENSMUSG00000088339 ENSMUST00000157714 Gm22850 snRNA Interval_8520 chr1 140551489 140552096 + 0 NA intron (ENSMUSG00000052726.16, intron 21 of 27) protein_coding-intron (ENSMUSG00000052726.16, intron 19 of 26) 104612 ENSMUSG00000102368.1 ENSMUSG00000102368 ENSMUST00000193820 4930590L20Rik antisense Interval_83861 chr19 5149184 5149650 + 0 NA intron (ENSMUSG00000024855.10, intron 11 of 22) protein_coding-intron (ENSMUSG00000024855.10, intron 10 of 23) -5918 ENSMUSG00000024855.10 ENSMUSG00000024855 ENSMUST00000236470 Pacs1 protein_coding Interval_12543 chr1 195073053 195073259 + 0 NA intron (ENSMUSG00000016493.13, intron 2 of 5) protein_coding-intron (ENSMUSG00000016493.13, intron 8 of 11) 8180 ENSMUSG00000103443.1 ENSMUSG00000103443 ENSMUST00000195553 Gm37132 TEC Interval_62391 chr15 91672268 91673747 + 0 NA promoter-TSS (ENSMUSG00000036273.15) protein_coding-promoter-TSS (ENSMUSG00000036273.15) -55570 ENSMUSG00000087965.1 ENSMUSG00000087965 ENSMUST00000157340 Gm25389 misc_RNA Interval_38432 chr12 79009718 79010198 + 0 NA Intergenic Intergenic -2618 ENSMUSG00000046157.13 ENSMUSG00000046157 ENSMUST00000173095 Tmem229b protein_coding Interval_82654 chr18 75672934 75673388 + 0 NA intron (ENSMUSG00000052928.9, intron 1 of 11) protein_coding-intron (ENSMUSG00000052928.9, intron 1 of 11) -35888 ENSMUSG00000052928.9 ENSMUSG00000052928 ENSMUST00000235147 Ctif protein_coding Interval_50522 chr14 14614191 14614508 + 0 NA Intergenic Intergenic 24403 ENSMUSG00000114574.1 ENSMUSG00000114574 ENSMUST00000223638 Gm47685 processed_pseudogene Interval_89370 chr2 19992286 19992584 + 0 NA promoter-TSS (ENSMUSG00000060795.5) processed_pseudogene-promoter-TSS (ENSMUSG00000060795.5) -486 ENSMUSG00000060795.5 ENSMUSG00000060795 ENSMUST00000122008 Gm13363 processed_pseudogene Interval_18918 chr10 93113950 93115111 + 0 NA Intergenic Intergenic 29279 ENSMUSG00000111013.1 ENSMUSG00000111013 ENSMUST00000214288 Gm32468 lincRNA Interval_145432 chr7 34720997 34723226 + 0 NA intron (ENSMUSG00000060402.8, intron 2 of 2) protein_coding-intron (ENSMUSG00000060402.8, intron 2 of 3) 31701 ENSMUSG00000060402.8 ENSMUSG00000060402 ENSMUST00000205390 Chst8 protein_coding Interval_52938 chr14 52140471 52143200 + 0 NA exon (ENSMUSG00000057132.16, exon 14 of 22) protein_coding-exon (ENSMUSG00000057132.16, exon 14 of 22) -7772 ENSMUSG00000057132.16 ENSMUSG00000057132 ENSMUST00000181736 Rpgrip1 protein_coding Interval_25336 chr11 46451803 46452263 + 0 NA promoter-TSS (ENSMUSG00000082530.1) processed_pseudogene-promoter-TSS (ENSMUSG00000082530.1) -686 ENSMUSG00000082530.1 ENSMUSG00000082530 ENSMUST00000119051 Gm12168 processed_pseudogene Interval_2593 chr1 41131078 41132377 + 0 NA Intergenic Intergenic 49525 ENSMUSG00000104072.1 ENSMUSG00000104072 ENSMUST00000194002 4930448I06Rik lincRNA Interval_174629 chrX 160501809 160502938 + 0 NA promoter-TSS (ENSMUSG00000031295.13) protein_coding-promoter-TSS (ENSMUSG00000031295.13) -2503 ENSMUSG00000087505.1 ENSMUSG00000087505 ENSMUST00000125700 Gm15241 antisense Interval_103851 chr3 53634205 53634603 + 0 NA intron (ENSMUSG00000037016.11, intron 2 of 23) protein_coding-intron (ENSMUSG00000037016.11, intron 2 of 23) 32924 ENSMUSG00000105840.1 ENSMUSG00000105840 ENSMUST00000198253 Gm6073 processed_pseudogene Interval_26531 chr11 58452561 58452956 + 0 NA intron (ENSMUSG00000052642.3, intron 1 of 3) protein_coding-intron (ENSMUSG00000052642.3, intron 1 of 3) 165 ENSMUSG00000052642.3 ENSMUSG00000052642 ENSMUST00000064614 Lypd9 protein_coding Interval_138374 chr6 87722354 87723292 + 0 NA promoter-TSS (ENSMUSG00000089997.2) protein_coding-promoter-TSS (ENSMUSG00000089997.2) -22 ENSMUSG00000089997.2 ENSMUSG00000089997 ENSMUST00000238521 1810020O05Rik protein_coding Interval_104810 chr3 74400851 74401183 + 0 NA Intergenic Intergenic -77025 ENSMUSG00000104227.1 ENSMUSG00000104227 ENSMUST00000193464 Gm37050 processed_pseudogene Interval_11200 chr1 180102309 180102569 + 0 NA intron (ENSMUSG00000026490.18, intron 15 of 37) protein_coding-intron (ENSMUSG00000026490.18, intron 14 of 34) 45712 ENSMUSG00000103636.1 ENSMUSG00000103636 ENSMUST00000195719 Gm38331 TEC Interval_30467 chr11 94563903 94565483 + 0 NA promoter-TSS (ENSMUSG00000039084.8) protein_coding-promoter-TSS (ENSMUSG00000039084.8) -354 ENSMUSG00000039084.8 ENSMUSG00000039084 ENSMUST00000040418 Chad protein_coding Interval_165185 chr9 45092208 45092795 + 0 NA intron (ENSMUSG00000048534.7, intron 3 of 4) protein_coding-intron (ENSMUSG00000048534.7, intron 5 of 10) -10293 ENSMUSG00000048534.7 ENSMUSG00000048534 ENSMUST00000215098 Jaml protein_coding Interval_105628 chr3 88235321 88235599 + 0 NA Intergenic Intergenic 19249 ENSMUSG00000104445.1 ENSMUSG00000104445 ENSMUST00000171887 Rhbg protein_coding Interval_82916 chr18 79092657 79092872 + 0 NA intron (ENSMUSG00000024548.11, intron 1 of 5) protein_coding-intron (ENSMUSG00000024548.11, intron 1 of 5) 16627 ENSMUSG00000024548.11 ENSMUSG00000024548 ENSMUST00000025430 Setbp1 protein_coding Interval_171115 chr9 114614277 114614859 + 0 NA intron (ENSMUSG00000056167.8, intron 10 of 15) protein_coding-intron (ENSMUSG00000056167.8, intron 11 of 19) -12376 ENSMUSG00000087925.1 ENSMUSG00000087925 ENSMUST00000157300 Gm23232 snRNA Interval_147145 chr7 63847486 63847779 + 0 NA Intergenic Intergenic 20654 ENSMUSG00000108629.1 ENSMUSG00000108629 ENSMUST00000206076 Gm44720 processed_pseudogene Interval_3526 chr1 59333200 59334479 + 0 NA intron (ENSMUSG00000026023.16, intron 12 of 13) protein_coding-intron (ENSMUSG00000026023.16, intron 12 of 13) 34903 ENSMUSG00000026023.16 ENSMUSG00000026023 ENSMUST00000162906 Cdk15 protein_coding Interval_51360 chr14 26999821 27001348 + 0 NA exon (ENSMUSG00000040726.10, exon 1 of 4) protein_coding-exon (ENSMUSG00000040726.10, exon 1 of 4) 6168 ENSMUSG00000040726.10 ENSMUSG00000040726 ENSMUST00000035433 Hesx1 protein_coding Interval_99212 chr2 158106573 158108018 + 0 NA intron (ENSMUSG00000027651.16, intron 5 of 5) protein_coding-intron (ENSMUSG00000027651.16, intron 5 of 5) -9859 ENSMUSG00000092283.1 ENSMUSG00000092283 ENSMUST00000173249 Gm20412 processed_transcript Interval_95367 chr2 106961229 106961894 + 0 NA TTS (ENSMUSG00000027122.15) protein_coding-TTS (ENSMUSG00000027122.15) 7716 ENSMUSG00000027122.15 ENSMUSG00000027122 ENSMUST00000124598 Arl14ep protein_coding Interval_160465 chr8 109737066 109738096 + 0 NA intron (ENSMUSG00000069895.4, intron 1 of 3) protein_coding-intron (ENSMUSG00000069895.4, intron 1 of 3) -5468 ENSMUSG00000069895.4 ENSMUSG00000069895 ENSMUST00000212726 Atxn1l protein_coding Interval_12399 chr1 193035046 193036441 + 0 NA promoter-TSS (ENSMUSG00000016200.14) protein_coding-promoter-TSS (ENSMUSG00000016200.14) 32 ENSMUSG00000016200.14 ENSMUSG00000016200 ENSMUST00000191907 Syt14 protein_coding Interval_58041 chr15 27132569 27133390 + 0 NA Intergenic Intergenic -71113 ENSMUSG00000088191.1 ENSMUSG00000088191 ENSMUST00000157566 Gm23903 snoRNA Interval_47282 chr13 80631599 80631815 + 0 NA Intergenic Intergenic 138698 ENSMUSG00000114528.1 ENSMUSG00000114528 ENSMUST00000223876 Gm46388 processed_pseudogene Interval_156645 chr8 56350157 56351032 + 0 NA Intergenic Intergenic 39290 ENSMUSG00000110397.1 ENSMUSG00000110397 ENSMUST00000209271 Gm45540 TEC Interval_81170 chr18 55591079 55591398 + 0 NA Intergenic Intergenic 31682 ENSMUSG00000092702.2 ENSMUSG00000092702 ENSMUST00000174961 Gm24514 misc_RNA Interval_165720 chr9 51666169 51666429 + 0 NA Intergenic Intergenic 9408 ENSMUSG00000110825.1 ENSMUSG00000110825 ENSMUST00000213150 Gm8959 processed_pseudogene Interval_174425 chrX 152171163 152171363 + 0 NA intron (ENSMUSG00000041115.16, intron 2 of 14) protein_coding-intron (ENSMUSG00000041115.16, intron 2 of 13) 26995 ENSMUSG00000041115.16 ENSMUSG00000041115 ENSMUST00000096275 Iqsec2 protein_coding Interval_8595 chr1 143645541 143646419 + 0 NA intron (ENSMUSG00000033849.3, intron 1 of 1) protein_coding-intron (ENSMUSG00000026361.9, intron 10 of 16) 5316 ENSMUSG00000033849.3 ENSMUSG00000033849 ENSMUST00000038252 B3galt2 protein_coding Interval_92121 chr2 53456567 53456741 + 0 NA Intergenic Intergenic -58167 ENSMUSG00000082472.1 ENSMUSG00000082472 ENSMUST00000118477 Gm13501 processed_pseudogene Interval_79495 chr18 32359314 32359641 + 0 NA intron (ENSMUSG00000097413.2, intron 2 of 2) lincRNA-intron (ENSMUSG00000097413.2, intron 2 of 2) -17753 ENSMUSG00000024381.16 ENSMUSG00000024381 ENSMUST00000234373 Bin1 protein_coding Interval_57543 chr15 12226022 12226217 + 0 NA intron (ENSMUSG00000039458.15, intron 1 of 6) protein_coding-intron (ENSMUSG00000039458.15, intron 1 of 15) 21015 ENSMUSG00000039458.15 ENSMUSG00000039458 ENSMUST00000173071 Mtmr12 protein_coding Interval_24879 chr11 40709584 40709950 + 0 NA intron (ENSMUSG00000020330.16, intron 12 of 17) protein_coding-intron (ENSMUSG00000020330.16, intron 12 of 17) 23649 ENSMUSG00000020330.16 ENSMUSG00000020330 ENSMUST00000152749 Hmmr protein_coding Interval_98524 chr2 152982622 152983926 + 0 NA intron (ENSMUSG00000074673.15, intron 3 of 11) protein_coding-intron (ENSMUSG00000074673.15, intron 4 of 14) 8357 ENSMUSG00000089898.2 ENSMUSG00000089898 ENSMUST00000130021 Gm14199 antisense Interval_142611 chr6 144261603 144261802 + 0 NA intron (ENSMUSG00000041540.16, intron 4 of 6) protein_coding-intron (ENSMUSG00000041540.16, intron 4 of 13) -52134 ENSMUSG00000041540.16 ENSMUSG00000041540 ENSMUST00000150087 Sox5 protein_coding Interval_154065 chr8 12430204 12432310 + 0 NA intron (ENSMUSG00000047935.17, intron 6 of 6) sense_overlapping-intron (ENSMUSG00000047935.17, intron 7 of 8) 34854 ENSMUSG00000092656.1 ENSMUSG00000092656 ENSMUST00000174915 Gm25239 miRNA Interval_94242 chr2 86235467 86236391 + 0 NA TTS (ENSMUSG00000075195.3) protein_coding-TTS (ENSMUSG00000075195.3) 4360 ENSMUSG00000075195.3 ENSMUSG00000075195 ENSMUST00000099900 Olfr1048 protein_coding Interval_17275 chr10 75525377 75526133 + 0 NA intron (ENSMUSG00000020180.10, intron 2 of 3) protein_coding-intron (ENSMUSG00000020180.10, intron 2 of 3) 7712 ENSMUSG00000020180.10 ENSMUSG00000020180 ENSMUST00000220229 Snrpd3 protein_coding Interval_42596 chr13 16391063 16392154 + 0 NA TTS (ENSMUSG00000113232.1) processed_pseudogene-TTS (ENSMUSG00000113232.1) 1017 ENSMUSG00000113232.1 ENSMUSG00000113232 ENSMUST00000221232 Gm48494 processed_pseudogene Interval_65079 chr16 18899293 18899762 + 0 NA intron (ENSMUSG00000099908.1, intron 6 of 23) protein_coding-intron (ENSMUSG00000022702.16, intron 5 of 24) -22918 ENSMUSG00000022706.16 ENSMUSG00000022706 ENSMUST00000232123 Mrpl40 protein_coding Interval_48161 chr13 96853064 96853733 + 0 NA intron (ENSMUSG00000109561.1, intron 17 of 24) protein_coding-intron (ENSMUSG00000109561.1, intron 13 of 19) 17208 ENSMUSG00000113046.1 ENSMUSG00000113046 ENSMUST00000221106 Gm48579 processed_pseudogene Interval_1837 chr1 34085928 34086698 + 0 NA intron (ENSMUSG00000026131.20, intron 2 of 5) protein_coding-intron (ENSMUSG00000026131.20, intron 2 of 97) 9086 ENSMUSG00000026131.20 ENSMUSG00000026131 ENSMUST00000182507 Dst protein_coding Interval_109385 chr3 141293427 141293660 + 0 NA Intergenic Intergenic -81188 ENSMUSG00000047674.2 ENSMUSG00000047674 ENSMUST00000057860 Pdha2 protein_coding Interval_105646 chr3 88334016 88334656 + 0 NA promoter-TSS (ENSMUSG00000001420.13) protein_coding-promoter-TSS (ENSMUSG00000001420.13) 1812 ENSMUSG00000001420.13 ENSMUSG00000001420 ENSMUST00000193872 Tmem79 protein_coding Interval_14816 chr10 40246550 40247606 + 0 NA promoter-TSS (ENSMUSG00000038510.12) protein_coding-promoter-TSS (ENSMUSG00000038510.12) -42 ENSMUSG00000038510.12 ENSMUSG00000038510 ENSMUST00000183114 Rpf2 protein_coding Interval_30811 chr11 96639895 96640435 + 0 NA intron (ENSMUSG00000057058.16, intron 4 of 7) protein_coding-intron (ENSMUSG00000057058.16, intron 4 of 11) -126637 ENSMUSG00000085242.1 ENSMUSG00000085242 ENSMUST00000124865 Gm11537 antisense Interval_105803 chr3 89411397 89412737 + 0 NA promoter-TSS (ENSMUSG00000042642.13) protein_coding-promoter-TSS (ENSMUSG00000042642.13) -197 ENSMUSG00000042642.13 ENSMUSG00000042642 ENSMUST00000162701 Flad1 protein_coding Interval_128905 chr5 115981583 115981993 + 0 NA exon (ENSMUSG00000029516.19, exon 30 of 47) protein_coding-exon (ENSMUSG00000029516.19, exon 30 of 47) -27528 ENSMUSG00000085376.1 ENSMUSG00000085376 ENSMUST00000127049 Gm14508 antisense Interval_159448 chr8 94806074 94806403 + 0 NA Intergenic Intergenic -4215 ENSMUSG00000031780.2 ENSMUSG00000031780 ENSMUST00000034232 Ccl17 protein_coding Interval_26788 chr11 60494234 60495311 + 0 NA intron (ENSMUSG00000042678.17, intron 17 of 47) protein_coding-intron (ENSMUSG00000042678.17, intron 19 of 65) 14427 ENSMUSG00000042678.17 ENSMUSG00000042678 ENSMUST00000122825 Myo15 protein_coding Interval_41141 chr12 111449999 111451064 + 0 NA promoter-TSS (ENSMUSG00000021281.15) protein_coding-promoter-TSS (ENSMUSG00000021281.15) 4447 ENSMUSG00000021281.15 ENSMUSG00000021281 ENSMUST00000127028 Tnfaip2 protein_coding Interval_86147 chr19 37073350 37073744 + 0 NA intron (ENSMUSG00000039652.16, intron 7 of 10) protein_coding-intron (ENSMUSG00000039652.16, intron 7 of 10) 75615 ENSMUSG00000080544.1 ENSMUSG00000080544 ENSMUST00000116894 Gm22714 ribozyme Interval_23815 chr11 26525245 26525555 + 0 NA intron (ENSMUSG00000064090.14, intron 6 of 11) protein_coding-intron (ENSMUSG00000064090.14, intron 7 of 12) -67826 ENSMUSG00000068314.5 ENSMUSG00000068314 ENSMUST00000089614 Gm6899 TEC Interval_155188 chr8 27276765 27277296 + 0 NA TTS (ENSMUSG00000031490.6) protein_coding-TTS (ENSMUSG00000031490.6) -2411 ENSMUSG00000109953.1 ENSMUSG00000109953 ENSMUST00000209427 5430430B14Rik TEC Interval_67930 chr16 59638710 59639799 + 0 NA promoter-TSS (ENSMUSG00000022722.18) protein_coding-promoter-TSS (ENSMUSG00000022722.18) 45 ENSMUSG00000116894.1 ENSMUSG00000116894 ENSMUST00000232302 4930547E14Rik processed_transcript Interval_68622 chr16 81704709 81704903 + 0 NA Intergenic Intergenic -87410 ENSMUSG00000116803.1 ENSMUSG00000116803 ENSMUST00000231467 Gm49558 processed_pseudogene Interval_115644 chr4 101568616 101570025 + 0 NA intron (ENSMUSG00000028528.17, intron 1 of 18) protein_coding-intron (ENSMUSG00000028528.17, intron 1 of 18) 14225 ENSMUSG00000089446.1 ENSMUSG00000089446 ENSMUST00000158821 Gm22533 misc_RNA Interval_133729 chr6 10328602 10328832 + 0 NA Intergenic Intergenic -5579 ENSMUSG00000107762.1 ENSMUSG00000107762 ENSMUST00000204122 Gm18421 processed_pseudogene Interval_31512 chr11 101109624 101109887 + 0 NA intron (ENSMUSG00000017802.14, intron 1 of 7) protein_coding-intron (ENSMUSG00000017802.14, intron 1 of 8) 10138 ENSMUSG00000017802.14 ENSMUSG00000017802 ENSMUST00000147201 Retreg3 protein_coding Interval_14505 chr10 34445913 34446142 + 0 NA Intergenic Intergenic -27559 ENSMUSG00000039480.14 ENSMUSG00000039480 ENSMUST00000099973 Nt5dc1 protein_coding Interval_16278 chr10 61891254 61892177 + 0 NA intron (ENSMUSG00000058806.15, intron 13 of 40) protein_coding-intron (ENSMUSG00000058806.15, intron 12 of 33) -42504 ENSMUSG00000058806.15 ENSMUSG00000058806 ENSMUST00000153120 Col13a1 protein_coding Interval_109022 chr3 135219818 135220402 + 0 NA intron (ENSMUSG00000045328.11, intron 8 of 45) protein_coding-intron (ENSMUSG00000045328.11, intron 8 of 45) 11123 ENSMUSG00000106079.1 ENSMUSG00000106079 ENSMUST00000199682 Gm43033 processed_pseudogene Interval_53372 chr14 56730914 56731419 + 0 NA intron (ENSMUSG00000021938.12, intron 6 of 7) protein_coding-intron (ENSMUSG00000021938.12, intron 6 of 8) -31805 ENSMUSG00000097743.1 ENSMUSG00000097743 ENSMUST00000180682 Gm16973 lincRNA Interval_15763 chr10 56243084 56243721 + 0 NA Intergenic Intergenic -14713 ENSMUSG00000038122.9 ENSMUSG00000038122 ENSMUST00000217792 Tbc1d32 protein_coding Interval_32349 chr11 107105360 107105694 + 0 NA intron (ENSMUSG00000040481.17, intron 2 of 29) protein_coding-intron (ENSMUSG00000040481.17, intron 2 of 27) -51881 ENSMUSG00000087596.1 ENSMUSG00000087596 ENSMUST00000129501 Gm11715 antisense Interval_73247 chr17 35756264 35757170 + 0 NA intron (ENSMUSG00000092600.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000092600.1, intron 1 of 1) 7474 ENSMUSG00000092600.1 ENSMUSG00000092600 ENSMUST00000174630 Gm20442 lincRNA Interval_116138 chr4 108041315 108042095 + 0 NA promoter-TSS (ENSMUSG00000089051.1) snRNA-promoter-TSS (ENSMUSG00000089051.1) 95 ENSMUSG00000089051.1 ENSMUSG00000089051 ENSMUST00000158426 Gm23354 snRNA Interval_127501 chr5 104570625 104572285 + 0 NA Intergenic Intergenic 44997 ENSMUSG00000118625.1 ENSMUSG00000118625 ENSMUST00000239343 AC123687.1 transcribed_unprocessed_pseudogene Interval_114889 chr4 86733929 86734798 + 0 NA Intergenic Intergenic -39892 ENSMUSG00000038024.17 ENSMUSG00000038024 ENSMUST00000128710 Dennd4c protein_coding Interval_127953 chr5 109801503 109801786 + 0 NA Intergenic Intergenic -5346 ENSMUSG00000105471.1 ENSMUSG00000105471 ENSMUST00000196262 A430073D23Rik lincRNA Interval_25822 chr11 51960475 51962161 + 0 NA Intergenic Intergenic -3064 ENSMUSG00000093325.1 ENSMUSG00000093325 ENSMUST00000175584 Gm26061 snRNA Interval_88168 chr19 60201815 60202645 + 0 NA intron (ENSMUSG00000057858.8, intron 5 of 5) protein_coding-intron (ENSMUSG00000057858.8, intron 6 of 7) -24104 ENSMUSG00000043623.7 ENSMUSG00000043623 ENSMUST00000061046 4933412A08Rik pseudogene Interval_69611 chr16 94606189 94606425 + 0 NA intron (ENSMUSG00000022897.15, intron 1 of 5) protein_coding-intron (ENSMUSG00000022897.15, intron 1 of 11) -14070 ENSMUSG00000081692.1 ENSMUSG00000081692 ENSMUST00000119372 Gm15971 processed_pseudogene Interval_126320 chr5 86581250 86582184 + 0 NA intron (ENSMUSG00000048764.16, intron 2 of 2) protein_coding-intron (ENSMUSG00000048764.16, intron 2 of 10) 50666 ENSMUSG00000048764.16 ENSMUSG00000048764 ENSMUST00000173259 Tmprss11f protein_coding Interval_13556 chr10 19517376 19517595 + 0 NA Intergenic Intergenic 5165 ENSMUSG00000110835.1 ENSMUSG00000110835 ENSMUST00000215700 Gm48563 TEC Interval_48436 chr13 99018574 99019534 + 0 NA intron (ENSMUSG00000114414.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000114414.1, intron 1 of 1) 11955 ENSMUSG00000114414.1 ENSMUSG00000114414 ENSMUST00000223781 A930014D07Rik lincRNA Interval_80996 chr18 52488139 52489135 + 0 NA TTS (ENSMUSG00000024528.8) protein_coding-TTS (ENSMUSG00000024528.8) -14898 ENSMUSG00000098000.1 ENSMUSG00000098000 ENSMUST00000183003 Gm27026 processed_pseudogene Interval_49436 chr13 111977789 111980265 + 0 NA Intergenic Intergenic -12439 ENSMUSG00000086402.1 ENSMUSG00000086402 ENSMUST00000142621 Gm15322 lincRNA Interval_49726 chr13 114271122 114272631 + 0 NA Intergenic Intergenic 12505 ENSMUSG00000114707.1 ENSMUSG00000114707 ENSMUST00000224003 Gm47558 TEC Interval_14763 chr10 39665141 39665347 + 0 NA intron (ENSMUSG00000087177.7, intron 2 of 3) antisense-intron (ENSMUSG00000087177.7, intron 1 of 3) 3155 ENSMUSG00000111847.1 ENSMUSG00000111847 ENSMUST00000214635 Gm8899 processed_pseudogene Interval_167361 chr9 67801563 67802925 + 0 NA Intergenic Intergenic 30086 ENSMUSG00000047990.6 ENSMUSG00000047990 ENSMUST00000054500 C2cd4a protein_coding Interval_19306 chr10 96478389 96479972 + 0 NA Intergenic Intergenic 2701 ENSMUSG00000097939.1 ENSMUSG00000097939 ENSMUST00000182096 Gm8601 processed_pseudogene Interval_119142 chr4 135823016 135824745 + 0 NA Intergenic Intergenic 25690 ENSMUSG00000037139.15 ENSMUSG00000037139 ENSMUST00000142177 Myom3 protein_coding Interval_140053 chr6 113674842 113676850 + 0 NA TTS (ENSMUSG00000107846.1) TEC-TTS (ENSMUSG00000107846.1) 3373 ENSMUSG00000107846.1 ENSMUSG00000107846 ENSMUST00000203466 Gm43963 TEC Interval_95864 chr2 117384824 117385038 + 0 NA Intergenic Intergenic 32766 ENSMUSG00000085681.1 ENSMUSG00000085681 ENSMUST00000138372 Gm13982 lincRNA Interval_33940 chr11 119558689 119559033 + 0 NA intron (ENSMUSG00000087675.1, intron 1 of 3) processed_transcript-intron (ENSMUSG00000087675.1, intron 1 of 3) 10231 ENSMUSG00000087675.1 ENSMUSG00000087675 ENSMUST00000135630 Gm11762 processed_transcript Interval_74269 chr17 47804887 47806567 + 0 NA Intergenic Intergenic 17817 ENSMUSG00000023990.18 ENSMUSG00000023990 ENSMUST00000140715 Tfeb protein_coding Interval_157634 chr8 71922232 71923399 + 0 NA promoter-TSS (ENSMUSG00000066880.15) protein_coding-promoter-TSS (ENSMUSG00000066880.15) -3964 ENSMUSG00000083718.2 ENSMUSG00000083718 ENSMUST00000118290 Ccnb2-ps transcribed_processed_pseudogene Interval_162098 chr8 125073476 125073801 + 0 NA intron (ENSMUSG00000043051.17, intron 1 of 2) protein_coding-intron (ENSMUSG00000043051.17, intron 1 of 12) 9623 ENSMUSG00000080516.1 ENSMUSG00000080516 ENSMUST00000116866 Gm22197 miRNA Interval_41928 chr13 4656164 4656931 + 0 NA intron (ENSMUSG00000113717.1, intron 1 of 6) lincRNA-intron (ENSMUSG00000113717.1, intron 1 of 6) 47213 ENSMUSG00000094772.2 ENSMUSG00000094772 ENSMUST00000086508 Rpl29-ps2 transcribed_processed_pseudogene Interval_113080 chr4 47646798 47647236 + 0 NA Intergenic Intergenic 43128 ENSMUSG00000098518.1 ENSMUSG00000098518 ENSMUST00000184188 Gm27668 misc_RNA Interval_166681 chr9 61885093 61885491 + 0 NA Intergenic Intergenic 29250 ENSMUSG00000007892.8 ENSMUSG00000007892 ENSMUST00000008036 Rplp1 protein_coding Interval_67594 chr16 51829614 51830142 + 0 NA Intergenic Intergenic 157409 ENSMUSG00000116725.1 ENSMUSG00000116725 ENSMUST00000232050 Gm29686 processed_transcript Interval_46515 chr13 66758080 66758658 + 0 NA Intergenic Intergenic -1883 ENSMUSG00000114423.1 ENSMUSG00000114423 ENSMUST00000224301 Gm48404 processed_pseudogene Interval_53723 chr14 61186276 61187773 + 0 NA intron (ENSMUSG00000048279.19, intron 5 of 7) protein_coding-intron (ENSMUSG00000048279.19, intron 6 of 9) -6449 ENSMUSG00000048279.19 ENSMUSG00000048279 ENSMUST00000229692 Sacs protein_coding Interval_124224 chr5 41719386 41719616 + 0 NA Intergenic Intergenic -11344 ENSMUSG00000029128.12 ENSMUSG00000029128 ENSMUST00000201473 Rab28 protein_coding Interval_89779 chr2 25395547 25396728 + 0 NA intron (ENSMUSG00000015085.8, intron 1 of 6) protein_coding-intron (ENSMUSG00000015085.8, intron 1 of 8) 221 ENSMUSG00000015085.8 ENSMUSG00000015085 ENSMUST00000140590 Entpd2 protein_coding Interval_10341 chr1 169670776 169671048 + 0 NA intron (ENSMUSG00000026678.10, intron 1 of 3) protein_coding-intron (ENSMUSG00000026678.10, intron 1 of 4) 15390 ENSMUSG00000026678.10 ENSMUSG00000026678 ENSMUST00000152809 Rgs5 protein_coding Interval_138799 chr6 91978356 91979952 + 0 NA intron (ENSMUSG00000034037.14, intron 1 of 20) protein_coding-intron (ENSMUSG00000034037.14, intron 1 of 20) -28396 ENSMUSG00000107794.1 ENSMUSG00000107794 ENSMUST00000204631 Gm44095 TEC Interval_81876 chr18 65575878 65576188 + 0 NA Intergenic Intergenic 4711 ENSMUSG00000117992.1 ENSMUSG00000117992 ENSMUST00000236474 Gm41760 antisense Interval_76281 chr17 78703683 78704203 + 0 NA intron (ENSMUSG00000024077.15, intron 1 of 17) protein_coding-intron (ENSMUSG00000024077.15, intron 1 of 17) 33253 ENSMUSG00000024077.15 ENSMUSG00000024077 ENSMUST00000145480 Strn protein_coding Interval_142140 chr6 137570499 137571988 + 0 NA promoter-TSS (ENSMUSG00000015766.14) protein_coding-promoter-TSS (ENSMUSG00000015766.14) -484 ENSMUSG00000015766.14 ENSMUSG00000015766 ENSMUST00000205037 Eps8 protein_coding Interval_40266 chr12 102896709 102897075 + 0 NA Intergenic Intergenic -2424 ENSMUSG00000043319.5 ENSMUSG00000043319 ENSMUST00000053611 Cox8c protein_coding Interval_36704 chr12 52268895 52269360 + 0 NA intron (ENSMUSG00000035142.18, intron 5 of 5) protein_coding-intron (ENSMUSG00000035142.18, intron 6 of 10) 93040 ENSMUSG00000035142.18 ENSMUSG00000035142 ENSMUST00000162111 Nubpl protein_coding Interval_110267 chr3 155164880 155165266 + 0 NA intron (ENSMUSG00000028182.14, intron 6 of 7) protein_coding-intron (ENSMUSG00000028182.14, intron 6 of 7) 70208 ENSMUSG00000104122.1 ENSMUSG00000104122 ENSMUST00000194899 Gm37482 TEC Interval_106410 chr3 95988633 95989530 + 0 NA TTS (ENSMUSG00000015745.9) protein_coding-TTS (ENSMUSG00000015745.9) 6717 ENSMUSG00000015745.9 ENSMUSG00000015745 ENSMUST00000157043 Plekho1 protein_coding Interval_137422 chr6 72158073 72158764 + 0 NA Intergenic Intergenic -4431 ENSMUSG00000108371.1 ENSMUSG00000108371 ENSMUST00000205674 Gm38832 lincRNA Interval_128444 chr5 113348628 113348874 + 0 NA Intergenic Intergenic -8543 ENSMUSG00000053873.1 ENSMUSG00000053873 ENSMUST00000066573 Aym1 protein_coding Interval_36669 chr12 51887591 51888076 + 0 NA exon (ENSMUSG00000035181.6, exon 2 of 2) protein_coding-exon (ENSMUSG00000035181.6, exon 2 of 2) -47212 ENSMUSG00000112746.1 ENSMUSG00000112746 ENSMUST00000218295 Gm19309 processed_pseudogene Interval_32363 chr11 107159017 107159732 + 0 NA intron (ENSMUSG00000087596.1, intron 1 of 2) antisense-intron (ENSMUSG00000087596.1, intron 1 of 2) 1966 ENSMUSG00000087596.1 ENSMUSG00000087596 ENSMUST00000129501 Gm11715 antisense Interval_56361 chr14 118070517 118070707 + 0 NA Intergenic Intergenic 25638 ENSMUSG00000115689.1 ENSMUSG00000115689 ENSMUST00000228171 4930435M08Rik antisense Interval_1641 chr1 30730349 30731144 + 0 NA Intergenic Intergenic -10784 ENSMUSG00000053185.2 ENSMUSG00000053185 ENSMUST00000065469 Gm9898 lincRNA Interval_107321 chr3 105800520 105802008 + 0 NA promoter-TSS (ENSMUSG00000068798.10) protein_coding-promoter-TSS (ENSMUSG00000068798.10) -11943 ENSMUSG00000104910.1 ENSMUSG00000104910 ENSMUST00000197991 Gm43331 sense_intronic Interval_62900 chr15 97798216 97798523 + 0 NA intron (ENSMUSG00000022475.19, intron 15 of 21) protein_coding-intron (ENSMUSG00000022475.19, intron 18 of 24) 19849 ENSMUSG00000081534.3 ENSMUSG00000081534 ENSMUST00000229084 Slc48a1 protein_coding Interval_57756 chr15 18821326 18821592 + 0 NA intron (ENSMUSG00000022321.15, intron 1 of 11) protein_coding-intron (ENSMUSG00000022321.15, intron 1 of 11) 2501 ENSMUSG00000022321.15 ENSMUSG00000022321 ENSMUST00000176409 Cdh10 protein_coding Interval_145748 chr7 38018616 38019985 + 0 NA exon (ENSMUSG00000030421.9, exon 1 of 11) protein_coding-exon (ENSMUSG00000030421.9, exon 1 of 11) 4251 ENSMUSG00000030421.9 ENSMUSG00000030421 ENSMUST00000206169 Uri1 protein_coding Interval_111119 chr4 12240698 12241803 + 0 NA Intergenic Intergenic 8417 ENSMUSG00000060989.8 ENSMUSG00000060989 ENSMUST00000125165 Gm11847 processed_pseudogene Interval_6682 chr1 118729995 118730992 + 0 NA Intergenic Intergenic 48672 ENSMUSG00000088363.1 ENSMUSG00000088363 ENSMUST00000157738 Gm23497 snRNA Interval_70760 chr17 14202524 14204433 + 0 NA promoter-TSS (ENSMUSG00000117185.1) antisense-promoter-TSS (ENSMUSG00000117185.1) -250 ENSMUSG00000117185.1 ENSMUSG00000117185 ENSMUST00000232962 Gm34510 antisense Interval_1548 chr1 25309926 25311093 + 0 NA intron (ENSMUSG00000033569.17, intron 16 of 30) protein_coding-intron (ENSMUSG00000033569.17, intron 15 of 29) 7199 ENSMUSG00000104027.1 ENSMUSG00000104027 ENSMUST00000193392 Gm37211 TEC Interval_171806 chr9 121309371 121309879 + 0 NA intron (ENSMUSG00000032536.12, intron 1 of 1) protein_coding-intron (ENSMUSG00000032536.12, intron 1 of 1) -9760 ENSMUSG00000110751.1 ENSMUSG00000110751 ENSMUST00000214451 C230053D17Rik TEC Interval_101968 chr3 13840248 13841051 + 0 NA promoter-TSS (ENSMUSG00000102891.1) processed_pseudogene-promoter-TSS (ENSMUSG00000102891.1) -418 ENSMUSG00000102891.1 ENSMUSG00000102891 ENSMUST00000193972 Gm19114 processed_pseudogene Interval_8821 chr1 151377478 151378205 + 0 NA intron (ENSMUSG00000052748.14, intron 16 of 18) protein_coding-intron (ENSMUSG00000052748.14, intron 17 of 19) 16594 ENSMUSG00000023150.14 ENSMUSG00000023150 ENSMUST00000190872 Ivns1abp protein_coding Interval_131239 chr5 135945349 135947334 + 0 NA Intergenic Intergenic -11787 ENSMUSG00000051391.9 ENSMUSG00000051391 ENSMUST00000126192 Ywhag protein_coding Interval_77025 chr17 85737085 85737597 + 0 NA Intergenic Intergenic 43712 ENSMUSG00000117422.1 ENSMUSG00000117422 ENSMUST00000235073 CJ186046Rik lincRNA Interval_173851 chrX 105962996 105964073 + 0 NA Intergenic Intergenic 48365 ENSMUSG00000031232.17 ENSMUSG00000031232 ENSMUST00000139421 Magt1 protein_coding Interval_162293 chr8 126838752 126840006 + 0 NA intron (ENSMUSG00000110498.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000110498.1, intron 1 of 1) 146 ENSMUSG00000110498.1 ENSMUSG00000110498 ENSMUST00000212914 A630001O12Rik lincRNA Interval_94752 chr2 94010145 94011280 + 0 NA promoter-TSS (ENSMUSG00000040174.14) protein_coding-promoter-TSS (ENSMUSG00000040174.14) 40 ENSMUSG00000040174.14 ENSMUSG00000040174 ENSMUST00000130289 Alkbh3 protein_coding Interval_144576 chr7 26308457 26308867 + 0 NA exon (ENSMUSG00000074254.4, exon 3 of 9) protein_coding-exon (ENSMUSG00000074254.4, exon 3 of 9) -1376 ENSMUSG00000108431.1 ENSMUSG00000108431 ENSMUST00000206226 Gm42375 antisense Interval_27690 chr11 69496777 69497154 + 0 NA intron (ENSMUSG00000005237.14, intron 16 of 85) protein_coding-intron (ENSMUSG00000005237.14, intron 15 of 84) 8470 ENSMUSG00000098432.1 ENSMUSG00000098432 ENSMUST00000184128 Gm27493 miRNA Interval_22740 chr11 14254604 14254774 + 0 NA Intergenic Intergenic -75648 ENSMUSG00000085452.1 ENSMUSG00000085452 ENSMUST00000126260 4930554G24Rik lincRNA Interval_131606 chr5 138733338 138734696 + 0 NA Intergenic Intergenic 8622 ENSMUSG00000103298.1 ENSMUSG00000103298 ENSMUST00000193602 Gm38232 TEC Interval_163512 chr9 21797708 21799289 + 0 NA promoter-TSS (ENSMUSG00000032194.9) protein_coding-promoter-TSS (ENSMUSG00000032194.9) 5 ENSMUSG00000032194.9 ENSMUSG00000032194 ENSMUST00000213691 Kank2 protein_coding Interval_167023 chr9 64624256 64624963 + 0 NA intron (ENSMUSG00000036466.17, intron 1 of 1) protein_coding-intron (ENSMUSG00000036466.17, intron 5 of 24) 101111 ENSMUSG00000004771.12 ENSMUSG00000004771 ENSMUST00000165083 Rab11a protein_coding Interval_32629 chr11 109288333 109290331 + 0 NA intron (ENSMUSG00000020599.13, intron 1 of 16) protein_coding-intron (ENSMUSG00000020599.13, intron 1 of 18) -42367 ENSMUSG00000020599.13 ENSMUSG00000020599 ENSMUST00000106704 Rgs9 protein_coding Interval_25787 chr11 51717246 51717628 + 0 NA intron (ENSMUSG00000036391.16, intron 12 of 22) protein_coding-intron (ENSMUSG00000036391.16, intron 12 of 22) 20485 ENSMUSG00000084744.1 ENSMUSG00000084744 ENSMUST00000122795 Gm25291 snoRNA Interval_65967 chr16 30587070 30588290 + 0 NA promoter-TSS (ENSMUSG00000022538.20) protein_coding-promoter-TSS (ENSMUSG00000022538.20) -12043 ENSMUSG00000046546.3 ENSMUSG00000046546 ENSMUST00000059078 Fam43a protein_coding Interval_58451 chr15 34633217 34634190 + 0 NA intron (ENSMUSG00000038879.8, intron 2 of 4) protein_coding-intron (ENSMUSG00000038879.8, intron 3 of 10) -41370 ENSMUSG00000115526.1 ENSMUSG00000115526 ENSMUST00000228853 4930413F20Rik antisense Interval_56755 chr14 121868554 121869279 + 0 NA Intergenic Intergenic 9588 ENSMUSG00000102112.1 ENSMUSG00000102112 ENSMUST00000185880 1810041H14Rik antisense Interval_56122 chr14 106058444 106058778 + 0 NA Intergenic Intergenic 34871 ENSMUSG00000115800.1 ENSMUSG00000115800 ENSMUST00000226185 Frg2f4 processed_pseudogene Interval_143320 chr7 5281074 5281671 + 0 NA Intergenic Intergenic -3922 ENSMUSG00000075906.1 ENSMUSG00000075906 ENSMUST00000101956 Gm23942 snRNA Interval_39889 chr12 99376439 99376638 + 0 NA TTS (ENSMUSG00000113610.1) TEC-TTS (ENSMUSG00000113610.1) 710 ENSMUSG00000113610.1 ENSMUSG00000113610 ENSMUST00000223488 Gm47132 TEC Interval_62215 chr15 88881177 88883199 + 0 NA Intergenic Intergenic 9337 ENSMUSG00000093394.1 ENSMUSG00000093394 ENSMUST00000176338 Gm20621 sense_overlapping Interval_5882 chr1 92918364 92920470 + 0 NA promoter-TSS (ENSMUSG00000026269.14) protein_coding-promoter-TSS (ENSMUSG00000026269.14) 8564 ENSMUSG00000026269.14 ENSMUSG00000026269 ENSMUST00000179531 Rnpepl1 protein_coding Interval_75988 chr17 74193340 74194095 + 0 NA Intergenic Intergenic -3218 ENSMUSG00000117113.1 ENSMUSG00000117113 ENSMUST00000233013 Gm49883 TEC Interval_26315 chr11 56092711 56093538 + 0 NA Intergenic Intergenic -52114 ENSMUSG00000037393.2 ENSMUSG00000037393 ENSMUST00000037682 Nmur2 protein_coding Interval_47354 chr13 81771419 81772001 + 0 NA Intergenic Intergenic 12039 ENSMUSG00000097793.1 ENSMUSG00000097793 ENSMUST00000181520 Gm17259 antisense Interval_39572 chr12 90912609 90912856 + 0 NA intron (ENSMUSG00000097071.2, intron 2 of 4) lincRNA-intron (ENSMUSG00000097071.2, intron 2 of 4) 25650 ENSMUSG00000113806.1 ENSMUSG00000113806 ENSMUST00000221621 Gm47688 processed_pseudogene Interval_120771 chr4 150557027 150557561 + 0 NA intron (ENSMUSG00000039852.17, intron 11 of 22) protein_coding-intron (ENSMUSG00000039852.17, intron 5 of 16) 11250 ENSMUSG00000085213.1 ENSMUSG00000085213 ENSMUST00000128800 Gm13091 antisense Interval_98991 chr2 156515714 156516439 + 0 NA intron (ENSMUSG00000027624.20, intron 14 of 20) protein_coding-intron (ENSMUSG00000027624.20, intron 14 of 21) 9682 ENSMUSG00000027624.20 ENSMUSG00000027624 ENSMUST00000137067 Epb41l1 protein_coding Interval_81159 chr18 55187441 55187768 + 0 NA Intergenic Intergenic 7764 ENSMUSG00000088227.1 ENSMUSG00000088227 ENSMUST00000157602 Gm22597 snRNA Interval_46260 chr13 63094166 63095670 + 0 NA intron (ENSMUSG00000021458.17, intron 1 of 7) protein_coding-intron (ENSMUSG00000021458.17, intron 4 of 15) -39133 ENSMUSG00000113257.1 ENSMUSG00000113257 ENSMUST00000223302 Gm30409 sense_intronic Interval_6344 chr1 106109155 106110350 + 0 NA Intergenic Intergenic 19684 ENSMUSG00000097612.1 ENSMUSG00000097612 ENSMUST00000180947 Gm26509 processed_pseudogene Interval_156919 chr8 61685195 61685407 + 0 NA intron (ENSMUSG00000058056.16, intron 8 of 8) protein_coding-intron (ENSMUSG00000058056.16, intron 9 of 19) 136215 ENSMUSG00000110131.1 ENSMUSG00000110131 ENSMUST00000210904 Gm18066 processed_pseudogene Interval_70511 chr17 11342111 11342513 + 0 NA intron (ENSMUSG00000023826.16, intron 3 of 10) protein_coding-intron (ENSMUSG00000023826.16, intron 4 of 6) -55547 ENSMUSG00000104527.1 ENSMUSG00000104527 ENSMUST00000195853 Gm37332 TEC Interval_20053 chr10 112801309 112802290 + 0 NA Intergenic Intergenic -35953 ENSMUSG00000112722.1 ENSMUSG00000112722 ENSMUST00000218495 Gm3942 lincRNA Interval_110569 chr4 3974808 3975440 + 0 NA Intergenic Intergenic -1529 ENSMUSG00000068240.5 ENSMUSG00000068240 ENSMUST00000089430 Gm11808 protein_coding Interval_109173 chr3 137598908 137601058 + 0 NA Intergenic Intergenic -21491 ENSMUSG00000080330.1 ENSMUSG00000080330 ENSMUST00000116680 Gm22468 miRNA Interval_157336 chr8 69625070 69625954 + 0 NA promoter-TSS (ENSMUSG00000060427.15) protein_coding-promoter-TSS (ENSMUSG00000060427.15) -11449 ENSMUSG00000060427.15 ENSMUSG00000060427 ENSMUST00000140522 Zfp868 protein_coding Interval_48806 chr13 103491217 103492292 + 0 NA Intergenic Intergenic -70672 ENSMUSG00000087860.1 ENSMUSG00000087860 ENSMUST00000157235 Gm24441 misc_RNA Interval_1101 chr1 15710669 15711486 + 0 NA exon (ENSMUSG00000092083.4, exon 2 of 2) protein_coding-exon (ENSMUSG00000092083.4, exon 2 of 2) -25031 ENSMUSG00000088829.1 ENSMUSG00000088829 ENSMUST00000158204 Gm25227 snoRNA Interval_79812 chr18 35257646 35259014 + 0 NA Intergenic Intergenic -5699 ENSMUSG00000117876.1 ENSMUSG00000117876 ENSMUST00000236119 Gm50146 antisense Interval_146588 chr7 47081093 47081735 + 0 NA TTS (ENSMUSG00000030854.17) protein_coding-TTS (ENSMUSG00000030854.17) 1810 ENSMUSG00000098960.1 ENSMUSG00000098960 ENSMUST00000183776 Mir7056 miRNA Interval_167313 chr9 67240328 67240686 + 0 NA intron (ENSMUSG00000052698.15, intron 27 of 31) protein_coding-intron (ENSMUSG00000052698.15, intron 53 of 57) -3781 ENSMUSG00000076379.2 ENSMUSG00000076379 ENSMUST00000102424 Mir190a miRNA Interval_90510 chr2 30870457 30871425 + 0 NA intron (ENSMUSG00000039476.13, intron 1 of 1) protein_coding-intron (ENSMUSG00000039476.13, intron 1 of 3) 25497 ENSMUSG00000039476.13 ENSMUSG00000039476 ENSMUST00000137924 Prrx2 protein_coding Interval_27925 chr11 70916694 70917033 + 0 NA intron (ENSMUSG00000020817.16, intron 8 of 16) protein_coding-intron (ENSMUSG00000020817.16, intron 8 of 17) -7218 ENSMUSG00000084139.1 ENSMUSG00000084139 ENSMUST00000121605 Gm12322 processed_pseudogene Interval_8430 chr1 139208238 139208598 + 0 NA intron (ENSMUSG00000063681.14, intron 11 of 11) protein_coding-intron (ENSMUSG00000063681.14, intron 11 of 11) 53266 ENSMUSG00000102243.1 ENSMUSG00000102243 ENSMUST00000191655 Gm37718 TEC Interval_76343 chr17 79282727 79283246 + 0 NA Intergenic Intergenic -24937 ENSMUSG00000117047.1 ENSMUSG00000117047 ENSMUST00000232946 Gm5230 processed_pseudogene Interval_21761 chr11 4197173 4197779 + 0 NA intron (ENSMUSG00000034412.13, intron 1 of 8) protein_coding-intron (ENSMUSG00000034412.13, intron 1 of 8) 10654 ENSMUSG00000034412.13 ENSMUSG00000034412 ENSMUST00000149465 Tbc1d10a protein_coding Interval_23058 chr11 19519841 19520168 + 0 NA Intergenic Intergenic 108057 ENSMUSG00000086911.1 ENSMUSG00000086911 ENSMUST00000146531 Gm12027 lincRNA Interval_92386 chr2 59421318 59421553 + 0 NA Intergenic Intergenic -21654 ENSMUSG00000080982.1 ENSMUSG00000080982 ENSMUST00000118339 Gm13549 processed_pseudogene Interval_94282 chr2 87469406 87469650 + 0 NA Intergenic Intergenic 15566 ENSMUSG00000058194.3 ENSMUSG00000058194 ENSMUST00000071355 Olfr1126 protein_coding Interval_171436 chr9 118341107 118341947 + 0 NA Intergenic Intergenic 53741 ENSMUSG00000084608.1 ENSMUSG00000084608 ENSMUST00000122659 Gm22198 misc_RNA Interval_67270 chr16 45192251 45192838 + 0 NA Intergenic Intergenic -12556 ENSMUSG00000062284.5 ENSMUSG00000062284 ENSMUST00000078768 Gm6030 processed_pseudogene Interval_27306 chr11 65812481 65812697 + 0 NA intron (ENSMUSG00000018347.16, intron 2 of 7) protein_coding-intron (ENSMUSG00000018347.16, intron 2 of 7) 5414 ENSMUSG00000018347.16 ENSMUSG00000018347 ENSMUST00000018491 Zkscan6 protein_coding Interval_68301 chr16 72742190 72742515 + 0 NA TTS (ENSMUSG00000022883.11) protein_coding-TTS (ENSMUSG00000022883.11) -233997 ENSMUSG00000022883.11 ENSMUSG00000022883 ENSMUST00000232432 Robo1 protein_coding Interval_2955 chr1 51614921 51616067 + 0 NA Intergenic Intergenic 82406 ENSMUSG00000101741.1 ENSMUSG00000101741 ENSMUST00000186769 Gm28055 lincRNA Interval_66289 chr16 32913720 32914843 + 0 NA exon (ENSMUSG00000022801.13, exon 1 of 21) protein_coding-exon (ENSMUSG00000022801.13, exon 1 of 21) 159 ENSMUSG00000022801.13 ENSMUSG00000022801 ENSMUST00000142290 Lrch3 protein_coding Interval_75520 chr17 67735158 67735679 + 0 NA intron (ENSMUSG00000032796.8, intron 3 of 15) protein_coding-intron (ENSMUSG00000032796.8, intron 3 of 62) 38153 ENSMUSG00000032796.8 ENSMUSG00000032796 ENSMUST00000233224 Lama1 protein_coding Interval_82191 chr18 68711774 68712002 + 0 NA Intergenic Intergenic -27512 ENSMUSG00000099300.1 ENSMUSG00000099300 ENSMUST00000183541 Mir6356 miRNA Interval_128337 chr5 112619248 112620633 + 0 NA Intergenic Intergenic -20395 ENSMUSG00000105735.1 ENSMUSG00000105735 ENSMUST00000195895 4933415J04Rik TEC Interval_74622 chr17 53886627 53887786 + 0 NA Intergenic Intergenic 3729 ENSMUSG00000105235.1 ENSMUSG00000105235 ENSMUST00000198911 Hcfc1r1-ps1 processed_pseudogene Interval_58339 chr15 32631049 32631706 + 0 NA exon (ENSMUSG00000022231.10, exon 15 of 23) protein_coding-exon (ENSMUSG00000022231.10, exon 15 of 23) -7872 ENSMUSG00000115063.1 ENSMUSG00000115063 ENSMUST00000227807 4930465K09Rik antisense Interval_10844 chr1 175911671 175912598 + 0 NA exon (ENSMUSG00000039748.11, exon 15 of 15) protein_coding-exon (ENSMUSG00000039748.11, exon 15 of 15) 7589 ENSMUSG00000094820.1 ENSMUSG00000094820 ENSMUST00000180129 Gm23805 snRNA Interval_160309 chr8 108027605 108028184 + 0 NA intron (ENSMUSG00000038872.10, intron 2 of 4) protein_coding-intron (ENSMUSG00000038872.10, intron 1 of 15) 33335 ENSMUSG00000038872.10 ENSMUSG00000038872 ENSMUST00000043896 Zfhx3 protein_coding Interval_166648 chr9 61596603 61598228 + 0 NA Intergenic Intergenic 87692 ENSMUSG00000111381.1 ENSMUSG00000111381 ENSMUST00000213400 Gm34424 transcribed_processed_pseudogene Interval_94701 chr2 93501456 93501722 + 0 NA Intergenic Intergenic 33150 ENSMUSG00000075025.10 ENSMUSG00000075025 ENSMUST00000167654 Gm10804 lincRNA Interval_114105 chr4 63472245 63472544 + 0 NA intron (ENSMUSG00000039137.18, intron 1 of 2) protein_coding-intron (ENSMUSG00000039137.18, intron 2 of 11) -39072 ENSMUSG00000039137.18 ENSMUSG00000039137 ENSMUST00000140720 Whrn protein_coding Interval_35304 chr12 20222683 20224505 + 0 NA intron (ENSMUSG00000116736.1, intron 1 of 1) processed_transcript-intron (ENSMUSG00000116736.1, intron 1 of 1) 12524 ENSMUSG00000113443.1 ENSMUSG00000113443 ENSMUST00000220815 Gm48668 processed_pseudogene Interval_121982 chr5 12964877 12965604 + 0 NA Intergenic Intergenic 24870 ENSMUSG00000094310.1 ENSMUSG00000094310 ENSMUST00000180047 Gm23243 miRNA Interval_126308 chr5 86406826 86408221 + 0 NA Intergenic Intergenic 10822 ENSMUSG00000072845.3 ENSMUSG00000072845 ENSMUST00000198504 Tmprss11a protein_coding Interval_5178 chr1 86277534 86278892 + 0 NA TTS (ENSMUSG00000062590.13) protein_coding-TTS (ENSMUSG00000062590.13) 23162 ENSMUSG00000087538.1 ENSMUSG00000087538 ENSMUST00000126385 Gm16341 antisense Interval_160712 chr8 111758928 111759307 + 0 NA Intergenic Intergenic -26981 ENSMUSG00000031955.10 ENSMUSG00000031955 ENSMUST00000212147 Bcar1 protein_coding Interval_170084 chr9 104306602 104307425 + 0 NA intron (ENSMUSG00000032561.15, intron 8 of 8) protein_coding-intron (ENSMUSG00000032561.15, intron 8 of 10) 30735 ENSMUSG00000032561.15 ENSMUSG00000032561 ENSMUST00000215852 Acpp protein_coding Interval_67668 chr16 55848784 55849519 + 0 NA intron (ENSMUSG00000075033.4, intron 5 of 5) protein_coding-intron (ENSMUSG00000075033.4, intron 5 of 5) -30636 ENSMUSG00000035356.17 ENSMUSG00000035356 ENSMUST00000139373 Nfkbiz protein_coding Interval_106437 chr3 96289008 96289830 + 0 NA intron (ENSMUSG00000015947.10, intron 3 of 4) protein_coding-intron (ENSMUSG00000015947.10, intron 3 of 5) 4514 ENSMUSG00000015947.10 ENSMUSG00000015947 ENSMUST00000200420 Fcgr1 protein_coding Interval_134758 chr6 31253116 31253745 + 0 NA intron (ENSMUSG00000087380.7, intron 2 of 5) processed_transcript-intron (ENSMUSG00000087380.7, intron 1 of 6) -35533 ENSMUSG00000106867.1 ENSMUSG00000106867 ENSMUST00000201868 Gm43800 TEC Interval_49435 chr13 111963633 111964206 + 0 NA Intergenic Intergenic -27547 ENSMUSG00000086402.1 ENSMUSG00000086402 ENSMUST00000142621 Gm15322 lincRNA Interval_131633 chr5 138971063 138971657 + 0 NA Intergenic Intergenic 22921 ENSMUSG00000025856.15 ENSMUSG00000025856 ENSMUST00000132051 Pdgfa protein_coding Interval_14808 chr10 40110664 40110863 + 0 NA intron (ENSMUSG00000019838.11, intron 1 of 2) protein_coding-intron (ENSMUSG00000019838.11, intron 1 of 5) 1301 ENSMUSG00000077200.1 ENSMUSG00000077200 ENSMUST00000104012 Gm25613 snoRNA Interval_83466 chr18 86207338 86208442 + 0 NA Intergenic Intergenic 35630 ENSMUSG00000118283.1 ENSMUSG00000118283 ENSMUST00000238105 Gm7623 processed_pseudogene Interval_8409 chr1 138955837 138957541 + 0 NA Intergenic Intergenic 6214 ENSMUSG00000102365.1 ENSMUSG00000102365 ENSMUST00000192016 Gm37045 TEC Interval_147338 chr7 65952993 65953281 + 0 NA TTS (ENSMUSG00000030513.14) protein_coding-TTS (ENSMUSG00000030513.14) 125 ENSMUSG00000030513.14 ENSMUSG00000030513 ENSMUST00000177272 Pcsk6 protein_coding Interval_34612 chr12 7896159 7897669 + 0 NA promoter-TSS (ENSMUSG00000112465.1) processed_pseudogene-promoter-TSS (ENSMUSG00000112465.1) -659 ENSMUSG00000112465.1 ENSMUSG00000112465 ENSMUST00000220333 Gm18387 processed_pseudogene Interval_142062 chr6 136860725 136861232 + 0 NA Intergenic Intergenic -3245 ENSMUSG00000030217.2 ENSMUSG00000030217 ENSMUST00000032341 Art4 protein_coding Interval_88498 chr2 5640268 5640935 + 0 NA intron (ENSMUSG00000039145.16, intron 1 of 1) protein_coding-intron (ENSMUSG00000039145.16, intron 1 of 10) 37030 ENSMUSG00000082013.1 ENSMUSG00000082013 ENSMUST00000117145 Gm13216 processed_pseudogene Interval_62959 chr15 98181030 98182033 + 0 NA Intergenic Intergenic 14011 ENSMUSG00000075427.15 ENSMUSG00000075427 ENSMUST00000154964 Olfr288 protein_coding Interval_18007 chr10 81332046 81333169 + 0 NA exon (ENSMUSG00000034881.8, exon 2 of 3) protein_coding-exon (ENSMUSG00000034881.8, exon 2 of 3) 3876 ENSMUSG00000034881.8 ENSMUSG00000034881 ENSMUST00000220312 Tbxa2r protein_coding Interval_94429 chr2 91157386 91158401 + 0 NA intron (ENSMUSG00000040687.16, intron 21 of 29) protein_coding-intron (ENSMUSG00000040687.16, intron 23 of 35) -18637 ENSMUSG00000040687.16 ENSMUSG00000040687 ENSMUST00000150517 Madd protein_coding Interval_65376 chr16 21995256 21997506 + 0 NA promoter-TSS (ENSMUSG00000044626.13) protein_coding-promoter-TSS (ENSMUSG00000044626.13) -13180 ENSMUSG00000022855.9 ENSMUSG00000022855 ENSMUST00000232263 Senp2 protein_coding Interval_80600 chr18 44535925 44536661 + 0 NA intron (ENSMUSG00000071856.10, intron 3 of 18) protein_coding-intron (ENSMUSG00000071856.10, intron 3 of 18) -125810 ENSMUSG00000097610.2 ENSMUSG00000097610 ENSMUST00000202771 A930012L18Rik antisense Interval_44494 chr13 45363140 45363678 + 0 NA Intergenic Intergenic -27518 ENSMUSG00000038175.10 ENSMUSG00000038175 ENSMUST00000222178 Mylip protein_coding Interval_67489 chr16 49813640 49814814 + 0 NA intron (ENSMUSG00000055447.19, intron 4 of 12) protein_coding-intron (ENSMUSG00000055447.19, intron 4 of 12) -15357 ENSMUSG00000087066.1 ENSMUSG00000087066 ENSMUST00000127115 Gm15518 antisense Interval_162492 chr9 3292540 3293557 + 0 NA Intergenic Intergenic -29523 ENSMUSG00000098373.1 ENSMUSG00000098373 ENSMUST00000184612 Gm27679 misc_RNA Interval_61230 chr15 80107637 80108162 + 0 NA intron (ENSMUSG00000022415.12, intron 1 of 2) protein_coding-intron (ENSMUSG00000022415.12, intron 1 of 3) 10029 ENSMUSG00000022415.12 ENSMUSG00000022415 ENSMUST00000135727 Syngr1 protein_coding Interval_4625 chr1 75509466 75510588 + 0 NA exon (ENSMUSG00000032968.4, exon 2 of 2) protein_coding-exon (ENSMUSG00000032968.4, exon 2 of 2) 2950 ENSMUSG00000032968.4 ENSMUSG00000032968 ENSMUST00000037330 Inha protein_coding Interval_29144 chr11 80637454 80637631 + 0 NA intron (ENSMUSG00000035441.14, intron 16 of 20) protein_coding-intron (ENSMUSG00000035441.14, intron 16 of 21) -128436 ENSMUSG00000085078.1 ENSMUSG00000085078 ENSMUST00000133400 C030013C21Rik sense_intronic Interval_84377 chr19 10468868 10469130 + 0 NA Intergenic Intergenic -11526 ENSMUSG00000090291.3 ENSMUSG00000090291 ENSMUST00000171400 Lrrc10b protein_coding Interval_127935 chr5 109550700 109551601 + 0 NA TTS (ENSMUSG00000106028.1) unprocessed_pseudogene-TTS (ENSMUSG00000106028.1) 3006 ENSMUSG00000106028.1 ENSMUSG00000106028 ENSMUST00000196881 Gm8493 unprocessed_pseudogene Interval_34108 chr11 120683954 120684193 + 0 NA intron (ENSMUSG00000025142.18, intron 4 of 5) protein_coding-intron (ENSMUSG00000025142.18, intron 4 of 15) -22898 ENSMUSG00000042988.10 ENSMUSG00000042988 ENSMUST00000150458 Notum protein_coding Interval_102012 chr3 14959493 14960175 + 0 NA Intergenic Intergenic -11367 ENSMUSG00000098008.1 ENSMUSG00000098008 ENSMUST00000182586 A930001A20Rik lincRNA Interval_141659 chr6 132642701 132643213 + 0 NA intron (ENSMUSG00000067541.7, intron 2 of 5) protein_coding-intron (ENSMUSG00000067541.7, intron 2 of 5) 8569 ENSMUSG00000067541.7 ENSMUSG00000067541 ENSMUST00000205081 A630073D07Rik protein_coding Interval_7489 chr1 131807632 131808556 + 0 NA intron (ENSMUSG00000042251.12, intron 10 of 12) protein_coding-intron (ENSMUSG00000042251.12, intron 10 of 13) -4036 ENSMUSG00000042251.12 ENSMUSG00000042251 ENSMUST00000132450 Pm20d1 protein_coding Interval_87303 chr19 47491599 47494225 + 0 NA Intergenic Intergenic -20070 ENSMUSG00000097990.1 ENSMUSG00000097990 ENSMUST00000182109 Gm19557 antisense Interval_43297 chr13 28868470 28868668 + 0 NA intron (ENSMUSG00000085936.7, intron 2 of 7) processed_transcript-intron (ENSMUSG00000085936.7, intron 1 of 5) 29376 ENSMUSG00000113352.1 ENSMUSG00000113352 ENSMUST00000223473 Gm34639 lincRNA Interval_140515 chr6 119174806 119175892 + 0 NA promoter-TSS (ENSMUSG00000041477.14) protein_coding-promoter-TSS (ENSMUSG00000041477.14) -17007 ENSMUSG00000041477.14 ENSMUSG00000041477 ENSMUST00000127059 Dcp1b protein_coding Interval_70354 chr17 8928372 8928587 + 0 NA intron (ENSMUSG00000023868.17, intron 1 of 19) protein_coding-intron (ENSMUSG00000023868.17, intron 3 of 21) -59863 ENSMUSG00000023873.13 ENSMUSG00000023873 ENSMUST00000136954 1700010I14Rik protein_coding Interval_14568 chr10 36077483 36078801 + 0 NA Intergenic Intergenic -17734 ENSMUSG00000110987.1 ENSMUSG00000110987 ENSMUST00000215218 Gm47048 processed_pseudogene Interval_163100 chr9 15276793 15277179 + 0 NA intron (ENSMUSG00000031935.9, intron 2 of 11) protein_coding-intron (ENSMUSG00000031935.9, intron 2 of 11) 2917 ENSMUSG00000031935.9 ENSMUSG00000031935 ENSMUST00000216406 Med17 protein_coding Interval_125618 chr5 72785386 72785723 + 0 NA intron (ENSMUSG00000029217.16, intron 1 of 13) protein_coding-intron (ENSMUSG00000029217.16, intron 6 of 18) 26520 ENSMUSG00000106739.1 ENSMUSG00000106739 ENSMUST00000202091 Gm43499 TEC Interval_110631 chr4 5298297 5298729 + 0 NA Intergenic Intergenic 252710 ENSMUSG00000087099.1 ENSMUSG00000087099 ENSMUST00000131675 Gm11782 lincRNA Interval_113921 chr4 59859556 59860667 + 0 NA intron (ENSMUSG00000028385.14, intron 2 of 8) protein_coding-intron (ENSMUSG00000028385.14, intron 2 of 8) -24583 ENSMUSG00000028385.14 ENSMUSG00000028385 ENSMUST00000143185 Snx30 protein_coding Interval_15843 chr10 58348722 58349000 + 0 NA TTS (ENSMUSG00000070214.1) snRNA-TTS (ENSMUSG00000070214.1) 743 ENSMUSG00000070214.1 ENSMUSG00000070214 ENSMUST00000093703 Gm23058 snRNA Interval_21653 chr11 3492422 3493087 + 0 NA intron (ENSMUSG00000034579.17, intron 6 of 7) protein_coding-intron (ENSMUSG00000034579.17, intron 6 of 7) 3764 ENSMUSG00000034579.17 ENSMUSG00000034579 ENSMUST00000151860 Pla2g3 protein_coding Interval_72105 chr17 28069241 28070090 + 0 NA promoter-TSS (ENSMUSG00000062859.15) protein_coding-promoter-TSS (ENSMUSG00000062859.15) 5156 ENSMUSG00000062859.15 ENSMUSG00000062859 ENSMUST00000233878 Tcp11 protein_coding Interval_153964 chr8 11534763 11535936 + 0 NA intron (ENSMUSG00000056228.10, intron 6 of 14) protein_coding-intron (ENSMUSG00000056228.10, intron 6 of 14) 15392 ENSMUSG00000056228.10 ENSMUSG00000056228 ENSMUST00000211734 Cars2 protein_coding Interval_133320 chr5 151686291 151688281 + 0 NA intron (ENSMUSG00000107241.1, intron 2 of 3) lincRNA-intron (ENSMUSG00000107241.1, intron 2 of 3) 1475 ENSMUSG00000107241.1 ENSMUSG00000107241 ENSMUST00000201237 Gm43129 lincRNA Interval_72598 chr17 30911946 30912163 + 0 NA intron (ENSMUSG00000024027.8, intron 3 of 13) protein_coding-intron (ENSMUSG00000024027.8, intron 3 of 12) 10195 ENSMUSG00000024027.8 ENSMUSG00000024027 ENSMUST00000236038 Glp1r protein_coding Interval_58718 chr15 37312878 37314090 + 0 NA intron (ENSMUSG00000022286.16, intron 8 of 9) protein_coding-intron (ENSMUSG00000022286.16, intron 8 of 15) 19325 ENSMUSG00000089811.2 ENSMUSG00000089811 ENSMUST00000159341 Gm16138 processed_pseudogene Interval_144306 chr7 24406710 24407393 + 0 NA intron (ENSMUSG00000002210.11, intron 5 of 5) protein_coding-intron (ENSMUSG00000002210.11, intron 5 of 13) -7682 ENSMUSG00000002210.11 ENSMUSG00000002210 ENSMUST00000146686 Smg9 protein_coding Interval_146051 chr7 43505417 43506333 + 0 NA promoter-TSS (ENSMUSG00000013353.10) protein_coding-promoter-TSS (ENSMUSG00000013353.10) 52 ENSMUSG00000013353.10 ENSMUSG00000013353 ENSMUST00000168883 4931406B18Rik protein_coding Interval_86640 chr19 42217208 42218388 + 0 NA Intergenic Intergenic -15546 ENSMUSG00000018822.7 ENSMUSG00000018822 ENSMUST00000018966 Sfrp5 protein_coding Interval_150366 chr7 109944191 109945376 + 0 NA intron (ENSMUSG00000035901.14, intron 1 of 3) protein_coding-intron (ENSMUSG00000035901.14, intron 1 of 22) 41504 ENSMUSG00000047554.14 ENSMUSG00000047554 ENSMUST00000207300 Tmem41b protein_coding Interval_54791 chr14 75070578 75071667 + 0 NA Intergenic Intergenic 34500 ENSMUSG00000034959.8 ENSMUSG00000034959 ENSMUST00000228689 Rubcnl protein_coding Interval_147996 chr7 76758284 76758463 + 0 NA intron (ENSMUSG00000025754.11, intron 20 of 22) protein_coding-intron (ENSMUSG00000025754.11, intron 14 of 14) -58656 ENSMUSG00000108771.1 ENSMUSG00000108771 ENSMUST00000206401 Gm45210 TEC Interval_108615 chr3 129584147 129585378 + 0 NA intron (ENSMUSG00000041220.10, intron 1 of 2) protein_coding-intron (ENSMUSG00000041220.10, intron 2 of 4) 46621 ENSMUSG00000106092.1 ENSMUSG00000106092 ENSMUST00000200283 Gm43072 TEC Interval_85015 chr19 21510133 21510366 + 0 NA Intergenic Intergenic -41955 ENSMUSG00000079382.3 ENSMUSG00000079382 ENSMUST00000112772 Gm3443 transcribed_unitary_pseudogene Interval_67387 chr16 48271174 48271477 + 0 NA Intergenic Intergenic 9511 ENSMUSG00000116756.1 ENSMUSG00000116756 ENSMUST00000232184 Gm49770 processed_pseudogene Interval_3884 chr1 64311432 64312423 + 0 NA Intergenic Intergenic -8884 ENSMUSG00000101895.1 ENSMUSG00000101895 ENSMUST00000190863 Gm28981 lincRNA Interval_112408 chr4 41087072 41087385 + 0 NA Intergenic Intergenic 7220 ENSMUSG00000028435.8 ENSMUSG00000028435 ENSMUST00000154722 Aqp3 protein_coding Interval_106483 chr3 96634957 96636050 + 0 NA promoter-TSS (ENSMUSG00000028102.15) protein_coding-promoter-TSS (ENSMUSG00000028102.15) 29 ENSMUSG00000106447.1 ENSMUSG00000106447 ENSMUST00000137564 Gm42957 protein_coding Interval_148907 chr7 89965030 89966414 + 0 NA promoter-TSS (ENSMUSG00000030619.10) protein_coding-promoter-TSS (ENSMUSG00000030619.10) -328 ENSMUSG00000109038.1 ENSMUSG00000109038 ENSMUST00000208880 Gm45120 TEC Interval_164223 chr9 32782081 32782394 + 0 NA Intergenic Intergenic -31497 ENSMUSG00000099148.1 ENSMUSG00000099148 ENSMUST00000183423 Gm3331 lincRNA Interval_26384 chr11 57536193 57537529 + 0 NA Intergenic Intergenic 18175 ENSMUSG00000020522.13 ENSMUSG00000020522 ENSMUST00000108848 Mfap3 protein_coding Interval_161134 chr8 117692894 117693159 + 0 NA exon (ENSMUSG00000110151.2, exon 8 of 8) lincRNA-exon (ENSMUSG00000110151.2, exon 8 of 8) 11176 ENSMUSG00000110151.2 ENSMUSG00000110151 ENSMUST00000212223 Gm38416 lincRNA Interval_158956 chr8 88231299 88231685 + 0 NA intron (ENSMUSG00000036779.12, intron 2 of 12) protein_coding-intron (ENSMUSG00000036779.12, intron 2 of 11) -20480 ENSMUSG00000036779.12 ENSMUSG00000036779 ENSMUST00000154115 Tent4b protein_coding Interval_81210 chr18 56501827 56502989 + 0 NA intron (ENSMUSG00000001700.10, intron 13 of 13) protein_coding-intron (ENSMUSG00000001700.10, intron 13 of 13) -15832 ENSMUSG00000118186.1 ENSMUSG00000118186 ENSMUST00000235656 Gm8642 processed_pseudogene Interval_154395 chr8 15552009 15552545 + 0 NA Intergenic Intergenic 14695 ENSMUSG00000109839.1 ENSMUSG00000109839 ENSMUST00000209975 Gm45677 TEC Interval_127396 chr5 103708905 103709500 + 0 NA intron (ENSMUSG00000029313.18, intron 1 of 6) protein_coding-intron (ENSMUSG00000029313.18, intron 1 of 6) -45362 ENSMUSG00000029313.18 ENSMUSG00000029313 ENSMUST00000152145 Aff1 protein_coding Interval_10622 chr1 172279441 172280016 + 0 NA exon (ENSMUSG00000007097.14, exon 16 of 23) protein_coding-exon (ENSMUSG00000007097.14, exon 16 of 23) -3250 ENSMUSG00000007097.14 ENSMUSG00000007097 ENSMUST00000137679 Atp1a2 protein_coding Interval_50685 chr14 18201100 18201504 + 0 NA TTS (ENSMUSG00000105635.1) miRNA-TTS (ENSMUSG00000105635.1) 627 ENSMUSG00000105635.1 ENSMUSG00000105635 ENSMUST00000198558 Gm44469 miRNA Interval_91190 chr2 35765702 35767756 + 0 NA promoter-TSS (ENSMUSG00000107106.1) TEC-promoter-TSS (ENSMUSG00000107106.1) -850 ENSMUSG00000107106.1 ENSMUSG00000107106 ENSMUST00000202120 Gm43760 TEC Interval_125233 chr5 65554378 65554684 + 0 NA intron (ENSMUSG00000029203.16, intron 1 of 4) protein_coding-intron (ENSMUSG00000029203.16, intron 1 of 6) 12602 ENSMUSG00000107362.1 ENSMUSG00000107362 ENSMUST00000202699 Gm40309 TEC Interval_110983 chr4 11024085 11025099 + 0 NA Intergenic Intergenic -16665 ENSMUSG00000049969.3 ENSMUSG00000049969 ENSMUST00000137891 Plekhf2 protein_coding Interval_81516 chr18 61326018 61326765 + 0 NA intron (ENSMUSG00000033871.14, intron 1 of 11) protein_coding-intron (ENSMUSG00000033871.14, intron 2 of 12) 51368 ENSMUSG00000024575.16 ENSMUSG00000024575 ENSMUST00000135688 Pde6a protein_coding Interval_70968 chr17 16920437 16921473 + 0 NA Intergenic Intergenic -30597 ENSMUSG00000060149.7 ENSMUSG00000060149 ENSMUST00000071374 BC002059 lincRNA Interval_106886 chr3 101550679 101552492 + 0 NA Intergenic Intergenic 29470 ENSMUSG00000104737.1 ENSMUSG00000104737 ENSMUST00000197360 Gm42937 sense_intronic Interval_90522 chr2 30934120 30934330 + 0 NA Intergenic Intergenic -4362 ENSMUSG00000050737.13 ENSMUSG00000050737 ENSMUST00000126588 Ptges protein_coding Interval_54710 chr14 73501426 73502136 + 0 NA Intergenic Intergenic -8257 ENSMUSG00000022109.6 ENSMUSG00000022109 ENSMUST00000228141 Med4 protein_coding Interval_26041 chr11 53642879 53643456 + 0 NA Intergenic Intergenic -2577 ENSMUSG00000084373.1 ENSMUSG00000084373 ENSMUST00000121977 Rps2-ps4 processed_pseudogene Interval_46000 chr13 59889702 59890350 + 0 NA Intergenic Intergenic 16384 ENSMUSG00000114669.1 ENSMUSG00000114669 ENSMUST00000225895 Gm48384 lincRNA Interval_116158 chr4 108225126 108225323 + 0 NA Intergenic Intergenic -7302 ENSMUSG00000034645.14 ENSMUSG00000034645 ENSMUST00000106690 Zyg11a protein_coding Interval_39590 chr12 91287280 91288090 + 0 NA intron (ENSMUSG00000061533.16, intron 14 of 25) protein_coding-intron (ENSMUSG00000061533.16, intron 14 of 25) -35984 ENSMUSG00000113239.1 ENSMUSG00000113239 ENSMUST00000222339 Gm18388 processed_pseudogene Interval_106212 chr3 94638388 94638598 + 0 NA intron (ENSMUSG00000005968.14, intron 1 of 5) protein_coding-intron (ENSMUSG00000005968.14, intron 3 of 12) -4605 ENSMUSG00000118474.1 ENSMUSG00000118474 ENSMUST00000238219 Gm10972 processed_pseudogene Interval_57150 chr15 6983181 6984210 + 0 NA Intergenic Intergenic -12342 ENSMUSG00000104334.1 ENSMUSG00000104334 ENSMUST00000192751 Gm38282 TEC Interval_40845 chr12 108803479 108804316 + 0 NA intron (ENSMUSG00000021264.12, intron 1 of 4) protein_coding-intron (ENSMUSG00000021264.12, intron 1 of 4) -2342 ENSMUSG00000021264.12 ENSMUSG00000021264 ENSMUST00000126912 Yy1 protein_coding Interval_166837 chr9 63123864 63124830 + 0 NA Intergenic Intergenic 7146 ENSMUSG00000111297.1 ENSMUSG00000111297 ENSMUST00000215204 Gm6082 processed_pseudogene Interval_129626 chr5 121408462 121409178 + 0 NA intron (ENSMUSG00000042719.17, intron 3 of 23) protein_coding-intron (ENSMUSG00000042719.17, intron 3 of 23) 6162 ENSMUSG00000106115.1 ENSMUSG00000106115 ENSMUST00000198012 Gm43420 TEC Interval_99130 chr2 157386647 157386870 + 0 NA intron (ENSMUSG00000063019.5, intron 2 of 2) protein_coding-intron (ENSMUSG00000063019.5, intron 2 of 2) 19164 ENSMUSG00000063019.5 ENSMUSG00000063019 ENSMUST00000081202 Manbal protein_coding Interval_146729 chr7 49763815 49764547 + 0 NA intron (ENSMUSG00000039745.8, intron 3 of 5) protein_coding-intron (ENSMUSG00000039745.8, intron 3 of 5) 5066 ENSMUSG00000039745.8 ENSMUSG00000039745 ENSMUST00000207895 Htatip2 protein_coding Interval_69426 chr16 93292540 93293730 + 0 NA Intergenic Intergenic 72255 ENSMUSG00000100277.8 ENSMUSG00000100277 ENSMUST00000231338 1810053B23Rik processed_transcript Interval_68685 chr16 84734886 84736158 + 0 NA promoter-TSS (ENSMUSG00000022889.7) protein_coding-promoter-TSS (ENSMUSG00000022889.7) -292 ENSMUSG00000022889.7 ENSMUSG00000022889 ENSMUST00000133901 Mrpl39 protein_coding Interval_138395 chr6 87850090 87852123 + 0 NA promoter-TSS (ENSMUSG00000030057.15) protein_coding-promoter-TSS (ENSMUSG00000030057.15) -76 ENSMUSG00000030057.15 ENSMUSG00000030057 ENSMUST00000204104 Cnbp protein_coding Interval_23279 chr11 21130791 21131165 + 0 NA intron (ENSMUSG00000020134.13, intron 1 of 6) protein_coding-intron (ENSMUSG00000020134.13, intron 1 of 6) 31444 ENSMUSG00000084362.1 ENSMUSG00000084362 ENSMUST00000121233 2610024D14Rik processed_pseudogene Interval_102837 chr3 31967775 31969051 + 0 NA intron (ENSMUSG00000037610.15, intron 2 of 6) protein_coding-intron (ENSMUSG00000037610.15, intron 1 of 4) 13649 ENSMUSG00000103539.1 ENSMUSG00000103539 ENSMUST00000194517 Gm37834 TEC Interval_63669 chr15 102683591 102684544 + 0 NA Intergenic Intergenic -12201 ENSMUSG00000076009.1 ENSMUSG00000076009 ENSMUST00000102055 Mir688 miRNA Interval_83392 chr18 84838103 84839238 + 0 NA promoter-TSS (ENSMUSG00000024646.14) protein_coding-promoter-TSS (ENSMUSG00000024646.14) -1954 ENSMUSG00000117781.1 ENSMUSG00000117781 ENSMUST00000236689 Gm17266 protein_coding Interval_57242 chr15 8090309 8091372 + 0 NA intron (ENSMUSG00000039828.7, intron 3 of 17) protein_coding-intron (ENSMUSG00000039828.7, intron 3 of 17) 8369 ENSMUSG00000039828.7 ENSMUSG00000039828 ENSMUST00000227371 Wdr70 protein_coding Interval_4093 chr1 68046556 68047380 + 0 NA intron (ENSMUSG00000062209.15, intron 25 of 27) protein_coding-intron (ENSMUSG00000062209.15, intron 25 of 27) 22725 ENSMUSG00000087329.3 ENSMUSG00000087329 ENSMUST00000124160 Gm15671 lincRNA Interval_155002 chr8 25601491 25602990 + 0 NA promoter-TSS (ENSMUSG00000054823.16) protein_coding-promoter-TSS (ENSMUSG00000054823.16) 639 ENSMUSG00000054823.16 ENSMUSG00000054823 ENSMUST00000147935 Nsd3 protein_coding Interval_151441 chr7 122470327 122471057 + 0 NA intron (ENSMUSG00000052889.11, intron 5 of 17) protein_coding-intron (ENSMUSG00000052889.11, intron 5 of 16) 7254 ENSMUSG00000108455.1 ENSMUSG00000108455 ENSMUST00000206563 Gm44745 TEC Interval_165155 chr9 44875546 44875794 + 0 NA intron (ENSMUSG00000002028.13, intron 1 of 3) protein_coding-intron (ENSMUSG00000002028.13, intron 1 of 35) 5196 ENSMUSG00000002028.13 ENSMUSG00000002028 ENSMUST00000215489 Kmt2a protein_coding Interval_58213 chr15 30925791 30926085 + 0 NA intron (ENSMUSG00000022240.10, intron 16 of 21) protein_coding-intron (ENSMUSG00000022240.10, intron 17 of 22) 36940 ENSMUSG00000115012.1 ENSMUSG00000115012 ENSMUST00000228332 9630009A06Rik antisense Interval_66686 chr16 36115971 36116720 + 0 NA Intergenic Intergenic 14860 ENSMUSG00000034362.7 ENSMUSG00000034362 ENSMUST00000161638 Csta1 protein_coding Interval_127915 chr5 109002907 109003247 + 0 NA intron (ENSMUSG00000067010.4, intron 1 of 4) protein_coding-intron (ENSMUSG00000067010.4, intron 2 of 5) 3450 ENSMUSG00000067010.4 ENSMUSG00000067010 ENSMUST00000233053 Vmn2r10 protein_coding Interval_36912 chr12 55311528 55312109 + 0 NA intron (ENSMUSG00000021023.14, intron 3 of 6) protein_coding-intron (ENSMUSG00000021023.14, intron 3 of 6) 12241 ENSMUSG00000021023.14 ENSMUSG00000021023 ENSMUST00000183654 Prorp protein_coding Interval_94363 chr2 90497070 90497282 + 0 NA intron (ENSMUSG00000025314.16, intron 1 of 23) protein_coding-intron (ENSMUSG00000025314.16, intron 1 of 23) 17926 ENSMUSG00000085471.1 ENSMUSG00000085471 ENSMUST00000126953 4933423P22Rik antisense Interval_153064 chr7 141142846 141143522 + 0 NA TTS (ENSMUSG00000025495.15) protein_coding-TTS (ENSMUSG00000025495.15) 10734 ENSMUSG00000025495.15 ENSMUSG00000025495 ENSMUST00000209928 Ptdss2 protein_coding Interval_39307 chr12 86558829 86559135 + 0 NA Intergenic Intergenic 88865 ENSMUSG00000021255.17 ENSMUSG00000021255 ENSMUST00000136464 Esrrb protein_coding Interval_162251 chr8 126464222 126464441 + 0 NA intron (ENSMUSG00000090290.2, intron 4 of 29) protein_coding-intron (ENSMUSG00000090290.2, intron 4 of 29) 10734 ENSMUSG00000090290.2 ENSMUSG00000090290 ENSMUST00000170518 Tarbp1 protein_coding Interval_159554 chr8 95427669 95428302 + 0 NA intron (ENSMUSG00000031796.7, intron 1 of 3) protein_coding-intron (ENSMUSG00000031796.7, intron 1 of 5) 6859 ENSMUSG00000031796.7 ENSMUSG00000031796 ENSMUST00000212131 Cfap20 protein_coding Interval_162075 chr8 124903307 124903632 + 0 NA TTS (ENSMUSG00000031986.6) protein_coding-TTS (ENSMUSG00000031986.6) 1654 ENSMUSG00000031986.6 ENSMUSG00000031986 ENSMUST00000212724 Sprtn protein_coding Interval_28434 chr11 75849562 75849976 + 0 NA intron (ENSMUSG00000020847.15, intron 6 of 8) protein_coding-intron (ENSMUSG00000020847.15, intron 5 of 7) -11200 ENSMUSG00000087322.1 ENSMUSG00000087322 ENSMUST00000135873 Gm16075 antisense Interval_20337 chr10 116977621 116978177 + 0 NA Intergenic Intergenic -4691 ENSMUSG00000111966.1 ENSMUSG00000111966 ENSMUST00000219792 Gm5781 processed_pseudogene Interval_31507 chr11 101079065 101080000 + 0 NA intron (ENSMUSG00000019301.5, intron 4 of 5) protein_coding-intron (ENSMUSG00000019301.5, intron 4 of 5) 1121 ENSMUSG00000019301.5 ENSMUSG00000019301 ENSMUST00000019445 Hsd17b1 protein_coding Interval_150445 chr7 110688958 110689990 + 0 NA TTS (ENSMUSG00000109700.1) lincRNA-TTS (ENSMUSG00000109700.1) 10260 ENSMUSG00000109700.1 ENSMUSG00000109700 ENSMUST00000210822 Gm21123 lincRNA Interval_99441 chr2 161108399 161109824 + 0 NA promoter-TSS (ENSMUSG00000057133.14) protein_coding-promoter-TSS (ENSMUSG00000057133.14) -300 ENSMUSG00000109780.1 ENSMUSG00000109780 ENSMUST00000209874 Gm45447 antisense Interval_155181 chr8 27240258 27242119 + 0 NA TTS (ENSMUSG00000109674.1) antisense-TTS (ENSMUSG00000109674.1) 8810 ENSMUSG00000109674.1 ENSMUSG00000109674 ENSMUST00000210817 Gm45470 antisense Interval_121651 chr5 4359407 4360088 + 0 NA Intergenic Intergenic 167380 ENSMUSG00000053178.5 ENSMUSG00000053178 ENSMUST00000177258 Mterf1b protein_coding Interval_131104 chr5 135148775 135150054 + 0 NA promoter-TSS (ENSMUSG00000005374.13) protein_coding-promoter-TSS (ENSMUSG00000005374.13) -277 ENSMUSG00000005374.13 ENSMUSG00000005374 ENSMUST00000152013 Tbl2 protein_coding Interval_43290 chr13 28790756 28791078 + 0 NA intron (ENSMUSG00000085936.7, intron 2 of 7) processed_transcript-intron (ENSMUSG00000085936.7, intron 1 of 5) -36206 ENSMUSG00000092093.1 ENSMUSG00000092093 ENSMUST00000171026 Gm17528 pseudogene Interval_54385 chr14 68139596 68139969 + 0 NA Intergenic Intergenic -14936 ENSMUSG00000022054.11 ENSMUSG00000022054 ENSMUST00000022638 Nefm protein_coding Interval_161769 chr8 122659713 122660447 + 0 NA intron (ENSMUSG00000006362.16, intron 1 of 1) protein_coding-intron (ENSMUSG00000006362.16, intron 1 of 10) 23759 ENSMUSG00000085917.1 ENSMUSG00000085917 ENSMUST00000128586 Gm15899 processed_pseudogene Interval_54371 chr14 67993322 67993578 + 0 NA Intergenic Intergenic 57880 ENSMUSG00000114621.1 ENSMUSG00000114621 ENSMUST00000223853 Gm31107 lincRNA Interval_41656 chr12 117439048 117440167 + 0 NA Intergenic Intergenic -102595 ENSMUSG00000101930.1 ENSMUSG00000101930 ENSMUST00000186454 Gm5441 antisense Interval_147976 chr7 76117052 76117313 + 0 NA Intergenic Intergenic 63088 ENSMUSG00000108467.1 ENSMUSG00000108467 ENSMUST00000206208 Gm45211 TEC Interval_161569 chr8 121268725 121269010 + 0 NA intron (ENSMUSG00000097384.1, intron 1 of 1) protein_coding-intron (ENSMUSG00000092329.1, intron 1 of 15) -65265 ENSMUSG00000097097.2 ENSMUSG00000097097 ENSMUST00000212635 5033426O07Rik lincRNA Interval_107325 chr3 105857494 105857727 + 0 NA Intergenic Intergenic -13297 ENSMUSG00000074344.7 ENSMUSG00000074344 ENSMUST00000199977 Tmigd3 protein_coding Interval_170562 chr9 108710001 108712237 + 0 NA intron (ENSMUSG00000032601.13, intron 1 of 9) protein_coding-intron (ENSMUSG00000032601.13, intron 1 of 10) 18662 ENSMUSG00000032601.13 ENSMUSG00000032601 ENSMUST00000195263 Prkar2a protein_coding Interval_134617 chr6 29994979 29995749 + 0 NA Intergenic Intergenic 6976 ENSMUSG00000095989.1 ENSMUSG00000095989 ENSMUST00000178068 Gm23049 miRNA Interval_126656 chr5 91798165 91798409 + 0 NA Intergenic Intergenic 8786 ENSMUSG00000096726.2 ENSMUSG00000096726 ENSMUST00000178933 Gm5558 processed_pseudogene Interval_38442 chr12 79057422 79057700 + 0 NA intron (ENSMUSG00000060716.7, intron 7 of 28) protein_coding-intron (ENSMUSG00000060716.7, intron 7 of 28) 21925 ENSMUSG00000060716.7 ENSMUSG00000060716 ENSMUST00000219946 Plekhh1 protein_coding Interval_77099 chr17 86535541 86536784 + 0 NA intron (ENSMUSG00000045038.14, intron 10 of 14) protein_coding-intron (ENSMUSG00000045038.14, intron 11 of 15) -30930 ENSMUSG00000071036.2 ENSMUSG00000071036 ENSMUST00000095186 Gm10309 protein_coding Interval_114702 chr4 84019754 84021193 + 0 NA Intergenic Intergenic 24406 ENSMUSG00000085217.1 ENSMUSG00000085217 ENSMUST00000125884 6030471H07Rik lincRNA Interval_137034 chr6 66811378 66811601 + 0 NA promoter-TSS (ENSMUSG00000093755.2) protein_coding-promoter-TSS (ENSMUSG00000093755.2) -2518 ENSMUSG00000093755.2 ENSMUSG00000093755 ENSMUST00000226783 Vmn1r39 protein_coding Interval_63532 chr15 101834933 101835758 + 0 NA Intergenic Intergenic 13616 ENSMUSG00000046834.7 ENSMUSG00000046834 ENSMUST00000230798 Krt1 protein_coding Interval_44350 chr13 44012736 44013351 + 0 NA intron (ENSMUSG00000113252.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000113252.1, intron 1 of 2) 5479 ENSMUSG00000113252.1 ENSMUSG00000113252 ENSMUST00000223171 Gm33489 lincRNA Interval_82250 chr18 69602600 69602834 + 0 NA intron (ENSMUSG00000053477.17, intron 1 of 5) protein_coding-intron (ENSMUSG00000053477.17, intron 9 of 20) 50754 ENSMUSG00000088659.1 ENSMUSG00000088659 ENSMUST00000158034 Gm24845 rRNA Interval_119845 chr4 140453059 140455128 + 0 NA intron (ENSMUSG00000085047.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000085047.1, intron 1 of 1) -7929 ENSMUSG00000118416.1 ENSMUSG00000118416 ENSMUST00000238366 Gm50453 unitary_pseudogene Interval_38852 chr12 83420534 83421532 + 0 NA intron (ENSMUSG00000021221.15, intron 1 of 10) protein_coding-intron (ENSMUSG00000021221.15, intron 1 of 8) 66683 ENSMUSG00000021221.15 ENSMUSG00000021221 ENSMUST00000177801 Dpf3 protein_coding Interval_46663 chr13 68470279 68470651 + 0 NA promoter-TSS (ENSMUSG00000113382.1) unprocessed_pseudogene-promoter-TSS (ENSMUSG00000113382.1) -633 ENSMUSG00000113382.1 ENSMUSG00000113382 ENSMUST00000221113 Gm48429 unprocessed_pseudogene Interval_169099 chr9 92452769 92453744 + 0 NA Intergenic Intergenic -4138 ENSMUSG00000032377.8 ENSMUSG00000032377 ENSMUST00000143866 Plscr4 protein_coding Interval_49939 chr13 118540499 118540883 + 0 NA Intergenic Intergenic -15461 ENSMUSG00000100727.6 ENSMUSG00000100727 ENSMUST00000185959 1700003P14Rik lincRNA Interval_81913 chr18 65799867 65801046 + 0 NA promoter-TSS (ENSMUSG00000024516.13) protein_coding-promoter-TSS (ENSMUSG00000024516.13) -99 ENSMUSG00000024516.13 ENSMUSG00000024516 ENSMUST00000235765 Sec11c protein_coding Interval_135701 chr6 43665440 43666688 + 0 NA promoter-TSS (ENSMUSG00000029735.17) protein_coding-promoter-TSS (ENSMUSG00000029735.17) -40098 ENSMUSG00000029735.17 ENSMUSG00000029735 ENSMUST00000114643 Tpk1 protein_coding Interval_146346 chr7 45441939 45442335 + 0 NA intron (ENSMUSG00000003865.16, intron 4 of 14) protein_coding-intron (ENSMUSG00000003865.16, intron 5 of 15) 7260 ENSMUSG00000003865.16 ENSMUSG00000003865 ENSMUST00000209230 Gys1 protein_coding Interval_24596 chr11 35023747 35024128 + 0 NA Intergenic Intergenic 124920 ENSMUSG00000064577.1 ENSMUSG00000064577 ENSMUST00000082643 Gm25799 snRNA Interval_121318 chr4 154952764 154954427 + 0 NA Intergenic Intergenic -7376 ENSMUSG00000048001.7 ENSMUSG00000048001 ENSMUST00000151480 Hes5 protein_coding Interval_52201 chr14 40338328 40338656 + 0 NA Intergenic Intergenic 9048 ENSMUSG00000114543.1 ENSMUSG00000114543 ENSMUST00000223953 Gm48028 processed_pseudogene Interval_170680 chr9 110071624 110072336 + 0 NA intron (ENSMUSG00000032479.15, intron 14 of 18) protein_coding-intron (ENSMUSG00000032479.15, intron 14 of 18) -6069 ENSMUSG00000032479.15 ENSMUSG00000032479 ENSMUST00000199985 Map4 protein_coding Interval_7471 chr1 131657964 131658387 + 0 NA intron (ENSMUSG00000004552.16, intron 1 of 8) protein_coding-intron (ENSMUSG00000004552.16, intron 1 of 9) -3736 ENSMUSG00000004552.16 ENSMUSG00000004552 ENSMUST00000141061 Ctse protein_coding Interval_4515 chr1 74754001 74754955 + 0 NA Intergenic Intergenic -5523 ENSMUSG00000006542.13 ENSMUSG00000006542 ENSMUST00000159728 Prkag3 protein_coding Interval_28199 chr11 74239720 74239958 + 0 NA exon (ENSMUSG00000083188.2, exon 1 of 1) polymorphic_pseudogene-exon (ENSMUSG00000083188.2, exon 1 of 1) 273 ENSMUSG00000083188.2 ENSMUSG00000083188 ENSMUST00000121065 Olfr404-ps1 polymorphic_pseudogene Interval_116995 chr4 118840570 118840827 + 0 NA Intergenic Intergenic -4419 ENSMUSG00000110947.1 ENSMUSG00000110947 ENSMUST00000076019 Olfr1333 protein_coding Interval_26449 chr11 57929611 57929913 + 0 NA Intergenic Intergenic 19323 ENSMUSG00000083657.1 ENSMUSG00000083657 ENSMUST00000117266 Gm12245 processed_pseudogene Interval_167025 chr9 64639756 64640331 + 0 NA exon (ENSMUSG00000036466.17, exon 7 of 25) protein_coding-exon (ENSMUSG00000036466.17, exon 7 of 25) 85677 ENSMUSG00000004771.12 ENSMUSG00000004771 ENSMUST00000165083 Rab11a protein_coding Interval_162192 chr8 125821081 125821384 + 0 NA intron (ENSMUSG00000060212.13, intron 4 of 18) protein_coding-intron (ENSMUSG00000060212.13, intron 19 of 33) 7801 ENSMUSG00000060212.13 ENSMUSG00000060212 ENSMUST00000187772 Pcnx2 protein_coding Interval_32365 chr11 107165385 107166008 + 0 NA TTS (ENSMUSG00000018433.14) protein_coding-TTS (ENSMUSG00000018433.14) 6536 ENSMUSG00000081103.1 ENSMUSG00000081103 ENSMUST00000117751 Rps12-ps26 processed_pseudogene Interval_130808 chr5 130847906 130848741 + 0 NA TTS (ENSMUSG00000060371.12) protein_coding-TTS (ENSMUSG00000060371.12) 19514 ENSMUSG00000106694.1 ENSMUSG00000106694 ENSMUST00000200788 Gm42894 TEC Interval_77609 chr17 93050706 93051219 + 0 NA Intergenic Intergenic 74441 ENSMUSG00000117409.1 ENSMUSG00000117409 ENSMUST00000234475 Gm49996 processed_pseudogene Interval_76129 chr17 75352841 75353078 + 0 NA intron (ENSMUSG00000001870.16, intron 27 of 34) protein_coding-intron (ENSMUSG00000001870.16, intron 26 of 33) -82937 ENSMUSG00000071042.12 ENSMUSG00000071042 ENSMUST00000234011 Rasgrp3 protein_coding Interval_107590 chr3 108736908 108738310 + 0 NA Intergenic Intergenic -14917 ENSMUSG00000049565.16 ENSMUSG00000049565 ENSMUST00000147916 Aknad1 protein_coding Interval_168122 chr9 77364437 77364686 + 0 NA Intergenic Intergenic 7209 ENSMUSG00000103794.1 ENSMUSG00000103794 ENSMUST00000193999 4930590H14Rik TEC Interval_135323 chr6 38327718 38327956 + 0 NA intron (ENSMUSG00000029826.14, intron 6 of 11) protein_coding-intron (ENSMUSG00000029826.14, intron 6 of 8) 26436 ENSMUSG00000029826.14 ENSMUSG00000029826 ENSMUST00000114898 Zc3hav1 protein_coding Interval_20624 chr10 119658112 119658450 + 0 NA intron (ENSMUSG00000034813.18, intron 1 of 21) protein_coding-intron (ENSMUSG00000034813.18, intron 1 of 22) 4217 ENSMUSG00000112106.1 ENSMUSG00000112106 ENSMUST00000218068 Gm47026 TEC Interval_76680 chr17 83444939 83445465 + 0 NA intron (ENSMUSG00000032624.16, intron 9 of 22) protein_coding-intron (ENSMUSG00000032624.16, intron 7 of 20) -11099 ENSMUSG00000032624.16 ENSMUSG00000032624 ENSMUST00000235121 Eml4 protein_coding Interval_30858 chr11 96909925 96910685 + 0 NA intron (ENSMUSG00000018669.14, intron 9 of 12) protein_coding-intron (ENSMUSG00000018669.14, intron 10 of 13) 5802 ENSMUSG00000018669.14 ENSMUSG00000018669 ENSMUST00000130767 Cdk5rap3 protein_coding Interval_107138 chr3 103830505 103831362 + 0 NA intron (ENSMUSG00000105053.1, intron 10 of 13) protein_coding-intron (ENSMUSG00000105053.1, intron 10 of 13) -15891 ENSMUSG00000044165.12 ENSMUSG00000044165 ENSMUST00000196184 Bcl2l15 protein_coding Interval_23789 chr11 26271981 26272174 + 0 NA Intergenic Intergenic 65626 ENSMUSG00000065889.1 ENSMUSG00000065889 ENSMUST00000083955 Gm22868 snRNA Interval_30081 chr11 89044767 89046525 + 0 NA intron (ENSMUSG00000000276.11, intron 8 of 11) protein_coding-intron (ENSMUSG00000000276.11, intron 7 of 10) 15102 ENSMUSG00000000276.11 ENSMUSG00000000276 ENSMUST00000152772 Dgke protein_coding Interval_93226 chr2 71314622 71314846 + 0 NA intron (ENSMUSG00000027010.16, intron 5 of 16) protein_coding-intron (ENSMUSG00000027010.16, intron 3 of 3) -5049 ENSMUSG00000082190.1 ENSMUSG00000082190 ENSMUST00000117993 Gm13641 processed_pseudogene Interval_126401 chr5 88005161 88006478 + 0 NA intron (ENSMUSG00000029280.13, intron 2 of 3) protein_coding-intron (ENSMUSG00000029280.13, intron 2 of 2) 3270 ENSMUSG00000029280.13 ENSMUSG00000029280 ENSMUST00000031211 Smr3a protein_coding Interval_74391 chr17 49875588 49877221 + 0 NA intron (ENSMUSG00000023999.14, intron 16 of 22) protein_coding-intron (ENSMUSG00000023999.14, intron 16 of 22) 19563 ENSMUSG00000090227.1 ENSMUSG00000090227 ENSMUST00000159471 Gm16554 antisense Interval_18603 chr10 88364483 88364855 + 0 NA intron (ENSMUSG00000020057.2, intron 1 of 3) protein_coding-intron (ENSMUSG00000020057.2, intron 1 of 3) -7673 ENSMUSG00000020057.2 ENSMUSG00000020057 ENSMUST00000138159 Dram1 protein_coding Interval_90453 chr2 30547072 30548472 + 0 NA Intergenic Intergenic 13043 ENSMUSG00000085275.1 ENSMUSG00000085275 ENSMUST00000145413 Gm14487 lincRNA Interval_169044 chr9 90952232 90952419 + 0 NA Intergenic Intergenic 13345 ENSMUSG00000099406.1 ENSMUSG00000099406 ENSMUST00000187536 Gm29408 lincRNA Interval_14456 chr10 33986185 33987271 + 0 NA TTS (ENSMUSG00000112280.1) processed_transcript-TTS (ENSMUSG00000112280.1) -5888 ENSMUSG00000112801.1 ENSMUSG00000112801 ENSMUST00000217878 Gm48034 processed_pseudogene Interval_118392 chr4 131083297 131083811 + 0 NA Intergenic Intergenic -73080 ENSMUSG00000086262.7 ENSMUSG00000086262 ENSMUST00000153810 A930031H19Rik lincRNA Interval_121997 chr5 13470335 13470630 + 0 NA intron (ENSMUSG00000028883.17, intron 3 of 4) protein_coding-intron (ENSMUSG00000028883.17, intron 3 of 16) -10546 ENSMUSG00000105750.1 ENSMUSG00000105750 ENSMUST00000197721 Gm43130 TEC Interval_39893 chr12 99392005 99394669 + 0 NA promoter-TSS (ENSMUSG00000033713.12) protein_coding-promoter-TSS (ENSMUSG00000033713.12) -16089 ENSMUSG00000113610.1 ENSMUSG00000113610 ENSMUST00000223488 Gm47132 TEC Interval_23254 chr11 20927734 20928336 + 0 NA Intergenic Intergenic 9666 ENSMUSG00000096061.1 ENSMUSG00000096061 ENSMUST00000178821 Gm23681 miRNA Interval_69232 chr16 91564793 91566320 + 0 NA TTS (ENSMUSG00000022965.8) protein_coding-TTS (ENSMUSG00000022965.8) 4233 ENSMUSG00000022965.8 ENSMUSG00000022965 ENSMUST00000130404 Ifngr2 protein_coding Interval_131516 chr5 137671418 137672221 + 0 NA intron (ENSMUSG00000029722.15, intron 1 of 10) protein_coding-intron (ENSMUSG00000029722.15, intron 1 of 11) -7503 ENSMUSG00000029722.15 ENSMUSG00000029722 ENSMUST00000138604 Agfg2 protein_coding Interval_87042 chr19 45757160 45757962 + 0 NA intron (ENSMUSG00000025220.8, intron 7 of 8) protein_coding-intron (ENSMUSG00000025220.8, intron 14 of 15) -8012 ENSMUSG00000056209.7 ENSMUSG00000056209 ENSMUST00000144165 Npm3 protein_coding Interval_173536 chrX 98989681 98990270 + 0 NA Intergenic Intergenic -13273 ENSMUSG00000031216.13 ENSMUSG00000031216 ENSMUST00000127361 Stard8 protein_coding Interval_141822 chr6 134721017 134721361 + 0 NA intron (ENSMUSG00000030203.17, intron 3 of 4) protein_coding-intron (ENSMUSG00000030203.17, intron 5 of 6) 19639 ENSMUSG00000042992.15 ENSMUSG00000042992 ENSMUST00000204133 Borcs5 protein_coding Interval_94846 chr2 96771377 96771792 + 0 NA intron (ENSMUSG00000050587.14, intron 2 of 7) protein_coding-intron (ENSMUSG00000050587.14, intron 2 of 6) -228040 ENSMUSG00000091288.1 ENSMUSG00000091288 ENSMUST00000171924 Gm17075 processed_pseudogene Interval_3717 chr1 61683394 61684591 + 0 NA intron (ENSMUSG00000052062.14, intron 1 of 9) protein_coding-intron (ENSMUSG00000052062.14, intron 1 of 21) 6743 ENSMUSG00000104402.1 ENSMUSG00000104402 ENSMUST00000193022 Gm38012 TEC Interval_42312 chr13 11993128 11993405 + 0 NA intron (ENSMUSG00000021313.16, intron 1 of 2) protein_coding-intron (ENSMUSG00000021313.16, intron 1 of 104) 53708 ENSMUSG00000098110.1 ENSMUSG00000098110 ENSMUST00000182176 Gm26956 processed_pseudogene Interval_33953 chr11 119629621 119631720 + 0 NA intron (ENSMUSG00000025583.15, intron 1 of 32) protein_coding-intron (ENSMUSG00000025583.15, intron 1 of 33) 15960 ENSMUSG00000083870.1 ENSMUSG00000083870 ENSMUST00000121392 Gm11761 processed_pseudogene Interval_137948 chr6 83635489 83635888 + 0 NA Intergenic Intergenic 20433 ENSMUSG00000014542.3 ENSMUSG00000014542 ENSMUST00000137647 Clec4f protein_coding Interval_138842 chr6 92477562 92477893 + 0 NA intron (ENSMUSG00000030020.13, intron 2 of 8) protein_coding-intron (ENSMUSG00000030020.13, intron 2 of 8) -84050 ENSMUSG00000098130.1 ENSMUSG00000098130 ENSMUST00000182175 Gm17797 processed_pseudogene Interval_137416 chr6 72097061 72098354 + 0 NA promoter-TSS (ENSMUSG00000056091.12) protein_coding-promoter-TSS (ENSMUSG00000056091.12) -6494 ENSMUSG00000101823.1 ENSMUSG00000101823 ENSMUST00000191298 Gm29438 TEC Interval_36436 chr12 44572302 44573086 + 0 NA intron (ENSMUSG00000020598.16, intron 22 of 24) protein_coding-intron (ENSMUSG00000020598.16, intron 23 of 30) 49968 ENSMUSG00000112823.1 ENSMUSG00000112823 ENSMUST00000217983 Gm6125 processed_pseudogene Interval_124156 chr5 38717211 38717854 + 0 NA intron (ENSMUSG00000039315.15, intron 16 of 18) protein_coding-intron (ENSMUSG00000039315.15, intron 16 of 18) -17720 ENSMUSG00000077273.1 ENSMUSG00000077273 ENSMUST00000104085 Gm22779 snRNA Interval_71634 chr17 25004902 25005326 + 0 NA intron (ENSMUSG00000038002.9, intron 2 of 20) protein_coding-intron (ENSMUSG00000038002.9, intron 2 of 20) 10674 ENSMUSG00000038002.9 ENSMUSG00000038002 ENSMUST00000233169 Cramp1l protein_coding Interval_123461 chr5 32683876 32684172 + 0 NA intron (ENSMUSG00000014932.15, intron 11 of 11) protein_coding-intron (ENSMUSG00000014932.15, intron 11 of 11) -11725 ENSMUSG00000118435.2 ENSMUSG00000118435 ENSMUST00000238745 Gm50482 unitary_pseudogene Interval_169304 chr9 96269874 96270431 + 0 NA promoter-TSS (ENSMUSG00000100382.1) processed_pseudogene-promoter-TSS (ENSMUSG00000100382.1) -51 ENSMUSG00000100382.1 ENSMUSG00000100382 ENSMUST00000190012 Gm28924 processed_pseudogene Interval_47817 chr13 93474488 93474892 + 0 NA intron (ENSMUSG00000021690.10, intron 1 of 3) protein_coding-intron (ENSMUSG00000021690.10, intron 1 of 10) 12844 ENSMUSG00000113247.1 ENSMUSG00000113247 ENSMUST00000223458 Gm30155 processed_pseudogene Interval_8114 chr1 135795494 135795713 + 0 NA intron (ENSMUSG00000026418.16, intron 2 of 6) protein_coding-intron (ENSMUSG00000026418.16, intron 2 of 6) 16169 ENSMUSG00000026418.16 ENSMUSG00000026418 ENSMUST00000129217 Tnni1 protein_coding Interval_166854 chr9 63231546 63232508 + 0 NA intron (ENSMUSG00000058444.8, intron 9 of 10) protein_coding-intron (ENSMUSG00000058444.8, intron 17 of 21) -85016 ENSMUSG00000022245.15 ENSMUSG00000022245 ENSMUST00000055281 Skor1 protein_coding Interval_40945 chr12 110086380 110087096 + 0 NA promoter-TSS (ENSMUSG00000113868.1) lincRNA-promoter-TSS (ENSMUSG00000113868.1) -315 ENSMUSG00000113868.1 ENSMUSG00000113868 ENSMUST00000222231 Gm34719 lincRNA Interval_111382 chr4 20064957 20065218 + 0 NA intron (ENSMUSG00000073987.4, intron 8 of 8) protein_coding-intron (ENSMUSG00000073987.4, intron 8 of 8) 23035 ENSMUSG00000073987.4 ENSMUSG00000073987 ENSMUST00000098242 Ggh protein_coding Interval_54428 chr14 69696714 69697783 + 0 NA TTS (ENSMUSG00000034194.18) protein_coding-TTS (ENSMUSG00000034194.18) 5000 ENSMUSG00000098666.1 ENSMUSG00000098666 ENSMUST00000184438 Mir6950 miRNA Interval_75653 chr17 70040397 70041905 + 0 NA intron (ENSMUSG00000003279.17, intron 1 of 1) protein_coding-intron (ENSMUSG00000003279.17, intron 1 of 14) -115320 ENSMUSG00000117078.1 ENSMUSG00000117078 ENSMUST00000232868 Gm4561 processed_pseudogene Interval_93248 chr2 71445584 71446013 + 0 NA Intergenic Intergenic 4816 ENSMUSG00000087789.1 ENSMUSG00000087789 ENSMUST00000157164 Gm23166 snRNA Interval_125667 chr5 73153977 73154221 + 0 NA intron (ENSMUSG00000070733.13, intron 3 of 11) protein_coding-intron (ENSMUSG00000070733.13, intron 3 of 62) -2915 ENSMUSG00000086376.2 ENSMUSG00000086376 ENSMUST00000146728 1700071G01Rik antisense Interval_151617 chr7 125398503 125399386 + 0 NA Intergenic Intergenic 19170 ENSMUSG00000108814.1 ENSMUSG00000108814 ENSMUST00000206549 Gm30717 lincRNA Interval_31570 chr11 101441949 101442975 + 0 NA promoter-TSS (ENSMUSG00000063316.13) protein_coding-promoter-TSS (ENSMUSG00000063316.13) -2412 ENSMUSG00000063316.13 ENSMUSG00000063316 ENSMUST00000152162 Rpl27 protein_coding Interval_58967 chr15 41129549 41130026 + 0 NA Intergenic Intergenic -43700 ENSMUSG00000048559.5 ENSMUSG00000048559 ENSMUST00000060066 4930555K19Rik processed_pseudogene Interval_106060 chr3 92110795 92111030 + 0 NA intron (ENSMUSG00000104791.1, intron 1 of 5) sense_overlapping-intron (ENSMUSG00000104791.1, intron 1 of 5) -2280 ENSMUSG00000106143.1 ENSMUSG00000106143 ENSMUST00000198245 Gm43735 antisense Interval_87714 chr19 55342245 55342615 + 0 NA intron (ENSMUSG00000024983.10, intron 3 of 7) protein_coding-intron (ENSMUSG00000024983.10, intron 3 of 7) 26103 ENSMUSG00000024983.10 ENSMUSG00000024983 ENSMUST00000224396 Vti1a protein_coding Interval_161222 chr8 118801568 118802493 + 0 NA intron (ENSMUSG00000031841.19, intron 6 of 8) protein_coding-intron (ENSMUSG00000031841.19, intron 4 of 13) 75130 ENSMUSG00000087707.1 ENSMUSG00000087707 ENSMUST00000157082 Gm22999 snoRNA Interval_85874 chr19 32621016 32621857 + 0 NA intron (ENSMUSG00000024899.7, intron 1 of 11) protein_coding-intron (ENSMUSG00000024899.7, intron 1 of 12) 1431 ENSMUSG00000024899.7 ENSMUSG00000024899 ENSMUST00000025833 Papss2 protein_coding Interval_12947 chr10 8559462 8560893 + 0 NA Intergenic Intergenic -82757 ENSMUSG00000077582.1 ENSMUSG00000077582 ENSMUST00000104394 Gm24374 snRNA Interval_45945 chr13 59531267 59531685 + 0 NA TTS (ENSMUSG00000021557.15) protein_coding-TTS (ENSMUSG00000021557.15) -26090 ENSMUSG00000114526.1 ENSMUSG00000114526 ENSMUST00000225984 A930015P04Rik TEC Interval_1661 chr1 30864422 30865134 + 0 NA TTS (ENSMUSG00000104315.1) TEC-TTS (ENSMUSG00000104315.1) 3760 ENSMUSG00000104315.1 ENSMUSG00000104315 ENSMUST00000192050 Gm37906 TEC Interval_90995 chr2 33992104 33992347 + 0 NA Intergenic Intergenic 13979 ENSMUSG00000086904.1 ENSMUSG00000086904 ENSMUST00000156633 Gm13404 lincRNA Interval_112983 chr4 46620367 46620941 + 0 NA exon (ENSMUSG00000039813.14, exon 6 of 13) protein_coding-exon (ENSMUSG00000039813.14, exon 6 of 13) -18763 ENSMUSG00000028337.14 ENSMUSG00000028337 ENSMUST00000127304 Coro2a protein_coding Interval_46524 chr13 66822762 66824366 + 0 NA Intergenic Intergenic -8345 ENSMUSG00000117784.1 ENSMUSG00000117784 ENSMUST00000222552 Vmn2r-ps108 unprocessed_pseudogene Interval_21608 chr10 130541608 130542080 + 0 NA promoter-TSS (ENSMUSG00000112742.1) lincRNA-promoter-TSS (ENSMUSG00000112742.1) -503 ENSMUSG00000112742.1 ENSMUSG00000112742 ENSMUST00000218557 Gm31793 lincRNA Interval_114594 chr4 82858857 82860186 + 0 NA promoter-TSS (ENSMUSG00000028403.15) protein_coding-promoter-TSS (ENSMUSG00000028403.15) 40 ENSMUSG00000028403.15 ENSMUSG00000028403 ENSMUST00000156055 Zdhhc21 protein_coding Interval_146041 chr7 43427296 43428715 + 0 NA intron (ENSMUSG00000118553.1, intron 1 of 1) protein_coding-intron (ENSMUSG00000093639.4, intron 1 of 5) 319 ENSMUSG00000118553.1 ENSMUSG00000118553 ENSMUST00000239023 Gm38999 protein_coding Interval_133190 chr5 150441618 150442544 + 0 NA TTS (ENSMUSG00000118543.1) unprocessed_pseudogene-TTS (ENSMUSG00000118543.1) 223 ENSMUSG00000118543.1 ENSMUSG00000118543 ENSMUST00000239092 AC154885.1 unprocessed_pseudogene Interval_79874 chr18 35684284 35684741 + 0 NA intron (ENSMUSG00000024350.6, intron 6 of 6) protein_coding-intron (ENSMUSG00000024350.6, intron 4 of 7) -18713 ENSMUSG00000073598.3 ENSMUSG00000073598 ENSMUST00000097617 1700066B19Rik protein_coding Interval_168278 chr9 78385580 78386345 + 0 NA Intergenic Intergenic 3505 ENSMUSG00000083032.1 ENSMUSG00000083032 ENSMUST00000119091 Gm8087 processed_pseudogene Interval_161879 chr8 123398485 123398786 + 0 NA promoter-TSS (ENSMUSG00000001472.17) protein_coding-promoter-TSS (ENSMUSG00000001472.17) -695 ENSMUSG00000001472.17 ENSMUSG00000001472 ENSMUST00000212996 Tcf25 protein_coding Interval_36156 chr12 36842298 36843162 + 0 NA Intergenic Intergenic 26525 ENSMUSG00000092998.1 ENSMUSG00000092998 ENSMUST00000175257 Mir5099 miRNA Interval_59312 chr15 51296592 51297340 + 0 NA intron (ENSMUSG00000115654.1, intron 2 of 5) lincRNA-intron (ENSMUSG00000115654.1, intron 2 of 5) 98644 ENSMUSG00000115654.1 ENSMUSG00000115654 ENSMUST00000226948 Gm19303 lincRNA Interval_133608 chr6 7596576 7596839 + 0 NA Intergenic Intergenic 41828 ENSMUSG00000061762.12 ENSMUSG00000061762 ENSMUST00000184481 Tac1 protein_coding Interval_158167 chr8 79430569 79430808 + 0 NA Intergenic Intergenic 26540 ENSMUSG00000109945.1 ENSMUSG00000109945 ENSMUST00000211483 Gm45601 lincRNA Interval_87508 chr19 53124384 53124681 + 0 NA Intergenic Intergenic -4152 ENSMUSG00000118233.1 ENSMUSG00000118233 ENSMUST00000236104 Gm30381 lincRNA Interval_47022 chr13 74417517 74419057 + 0 NA Intergenic Intergenic 11222 ENSMUSG00000076033.1 ENSMUSG00000076033 ENSMUST00000102079 Mir692-3 miRNA Interval_4279 chr1 72357938 72358370 + 0 NA intron (ENSMUSG00000026187.9, intron 16 of 20) protein_coding-intron (ENSMUSG00000026187.9, intron 16 of 20) 50727 ENSMUSG00000026187.9 ENSMUSG00000026187 ENSMUST00000027379 Xrcc5 protein_coding Interval_55355 chr14 84434136 84434456 + 0 NA Intergenic Intergenic -14211 ENSMUSG00000035566.7 ENSMUSG00000035566 ENSMUST00000226362 Pcdh17 protein_coding Interval_64460 chr16 11582746 11583316 + 0 NA intron (ENSMUSG00000071669.14, intron 15 of 20) protein_coding-intron (ENSMUSG00000071669.14, intron 8 of 13) -86725 ENSMUSG00000082653.1 ENSMUSG00000082653 ENSMUST00000117770 Gm15897 processed_pseudogene Interval_40154 chr12 102015237 102015618 + 0 NA Intergenic Intergenic -38359 ENSMUSG00000113902.1 ENSMUSG00000113902 ENSMUST00000222608 Ndufb1-ps protein_coding Interval_102220 chr3 19567090 19567293 + 0 NA intron (ENSMUSG00000027606.12, intron 2 of 4) protein_coding-intron (ENSMUSG00000027606.12, intron 2 of 4) 6938 ENSMUSG00000096211.1 ENSMUSG00000096211 ENSMUST00000082660 Gm23330 snRNA Interval_86372 chr19 39167429 39167744 + 0 NA intron (ENSMUSG00000067229.3, intron 4 of 7) protein_coding-intron (ENSMUSG00000067229.3, intron 5 of 8) 53676 ENSMUSG00000067229.3 ENSMUSG00000067229 ENSMUST00000146494 Cyp2c66 protein_coding Interval_10599 chr1 172138479 172138688 + 0 NA Intergenic Intergenic 6318 ENSMUSG00000089803.3 ENSMUSG00000089803 ENSMUST00000126220 Gm10171 processed_pseudogene Interval_124786 chr5 54022756 54023002 + 0 NA intron (ENSMUSG00000039156.19, intron 1 of 12) protein_coding-intron (ENSMUSG00000039156.19, intron 1 of 11) 72201 ENSMUSG00000107105.1 ENSMUSG00000107105 ENSMUST00000201566 Gm15820 processed_pseudogene Interval_18352 chr10 85145982 85147176 + 0 NA exon (ENSMUSG00000020038.10, exon 7 of 13) protein_coding-exon (ENSMUSG00000020038.10, exon 7 of 13) 4777 ENSMUSG00000020038.10 ENSMUSG00000020038 ENSMUST00000214675 Cry1 protein_coding Interval_97623 chr2 140856637 140857169 + 0 NA intron (ENSMUSG00000068205.14, intron 4 of 16) protein_coding-intron (ENSMUSG00000068205.14, intron 4 of 17) 99346 ENSMUSG00000081731.1 ENSMUSG00000081731 ENSMUST00000121776 Calr-ps processed_pseudogene Interval_17797 chr10 80141140 80142838 + 0 NA promoter-TSS (ENSMUSG00000003072.15) protein_coding-promoter-TSS (ENSMUSG00000003072.15) 3357 ENSMUSG00000003072.15 ENSMUSG00000003072 ENSMUST00000105366 Atp5d protein_coding Interval_5944 chr1 93400445 93402207 + 0 NA promoter-TSS (ENSMUSG00000034107.10) protein_coding-promoter-TSS (ENSMUSG00000034107.10) -535 ENSMUSG00000034107.10 ENSMUSG00000034107 ENSMUST00000190340 Ano7 protein_coding Interval_109426 chr3 142279197 142279627 + 0 NA intron (ENSMUSG00000028273.15, intron 7 of 12) protein_coding-intron (ENSMUSG00000028273.15, intron 7 of 12) 24567 ENSMUSG00000028273.15 ENSMUSG00000028273 ENSMUST00000058626 Pdlim5 protein_coding Interval_40673 chr12 106842391 106842612 + 0 NA intron (ENSMUSG00000085801.1, intron 2 of 4) lincRNA-intron (ENSMUSG00000085801.1, intron 2 of 4) 4519 ENSMUSG00000085801.1 ENSMUSG00000085801 ENSMUST00000156376 1700013N06Rik lincRNA Interval_64137 chr16 8674119 8674435 + 0 NA Intergenic Intergenic -2122 ENSMUSG00000008393.9 ENSMUSG00000008393 ENSMUST00000008537 Carhsp1 protein_coding Interval_14288 chr10 30498345 30498682 + 0 NA Intergenic Intergenic 4571 ENSMUSG00000094452.1 ENSMUSG00000094452 ENSMUST00000179244 Gm22623 snRNA Interval_140813 chr6 121532545 121533678 + 0 NA Intergenic Intergenic -5085 ENSMUSG00000107923.1 ENSMUSG00000107923 ENSMUST00000205071 Gm43922 processed_pseudogene Interval_103548 chr3 48608755 48609166 + 0 NA exon (ENSMUSG00000037910.2, exon 1 of 2) lincRNA-exon (ENSMUSG00000037910.2, exon 1 of 2) 142 ENSMUSG00000037910.2 ENSMUSG00000037910 ENSMUST00000036023 1700018B24Rik lincRNA Interval_114851 chr4 86328370 86329009 + 0 NA intron (ENSMUSG00000066113.16, intron 16 of 28) protein_coding-intron (ENSMUSG00000066113.16, intron 3 of 15) 113652 ENSMUSG00000083272.1 ENSMUSG00000083272 ENSMUST00000118478 Gm12550 processed_pseudogene Interval_65014 chr16 17873229 17873591 + 0 NA intron (ENSMUSG00000003166.20, intron 2 of 3) protein_coding-intron (ENSMUSG00000003166.20, intron 1 of 9) 18261 ENSMUSG00000092470.1 ENSMUSG00000092470 ENSMUST00000150068 Gm20518 protein_coding Interval_138487 chr6 88584309 88585327 + 0 NA intron (ENSMUSG00000033182.12, intron 4 of 4) protein_coding-intron (ENSMUSG00000033182.12, intron 5 of 5) 33704 ENSMUSG00000033182.12 ENSMUSG00000033182 ENSMUST00000184664 Kbtbd12 protein_coding Interval_70375 chr17 9371006 9371246 + 0 NA Intergenic Intergenic -47331 ENSMUSG00000117015.1 ENSMUSG00000117015 ENSMUST00000232889 Gm7947 processed_pseudogene Interval_69122 chr16 90792993 90793333 + 0 NA intron (ENSMUSG00000039929.14, intron 8 of 14) protein_coding-intron (ENSMUSG00000039929.14, intron 8 of 38) 17229 ENSMUSG00000039929.14 ENSMUSG00000039929 ENSMUST00000128989 Urb1 protein_coding Interval_129663 chr5 121605996 121606692 + 0 NA promoter-TSS (ENSMUSG00000042647.13) protein_coding-promoter-TSS (ENSMUSG00000042647.13) 12519 ENSMUSG00000042647.13 ENSMUSG00000042647 ENSMUST00000197916 Acad12 protein_coding Interval_131183 chr5 135656781 135658189 + 0 NA intron (ENSMUSG00000105239.1, intron 2 of 3) lincRNA-intron (ENSMUSG00000105239.1, intron 2 of 3) -13149 ENSMUSG00000094372.1 ENSMUSG00000094372 ENSMUST00000179536 Gm21839 pseudogene Interval_113006 chr4 46773244 46773490 + 0 NA intron (ENSMUSG00000039809.10, intron 7 of 18) protein_coding-intron (ENSMUSG00000039809.10, intron 7 of 18) 86535 ENSMUSG00000039809.10 ENSMUSG00000039809 ENSMUST00000206773 Gabbr2 protein_coding Interval_83142 chr18 82071188 82071877 + 0 NA Intergenic Intergenic 75698 ENSMUSG00000118278.1 ENSMUSG00000118278 ENSMUST00000236169 Gm50293 TEC Interval_152948 chr7 139975372 139975752 + 0 NA TTS (ENSMUSG00000073795.11) protein_coding-TTS (ENSMUSG00000073795.11) 3157 ENSMUSG00000073795.11 ENSMUSG00000073795 ENSMUST00000121412 Spef1l protein_coding Interval_97412 chr2 135919456 135920172 + 0 NA intron (ENSMUSG00000039943.16, intron 6 of 36) protein_coding-intron (ENSMUSG00000039943.16, intron 5 of 35) 106437 ENSMUSG00000064444.1 ENSMUSG00000064444 ENSMUST00000082510 Gm26227 snRNA Interval_6323 chr1 105879913 105881621 + 0 NA Intergenic Intergenic 10245 ENSMUSG00000102690.1 ENSMUSG00000102690 ENSMUST00000194221 Gm37779 TEC Interval_142378 chr6 141141595 141142145 + 0 NA Intergenic Intergenic 3823 ENSMUSG00000107462.1 ENSMUSG00000107462 ENSMUST00000203682 Gm7384 processed_pseudogene Interval_97384 chr2 135658443 135660090 + 0 NA promoter-TSS (ENSMUSG00000039943.16) protein_coding-promoter-TSS (ENSMUSG00000039943.16) -10187 ENSMUSG00000085908.1 ENSMUSG00000085908 ENSMUST00000154946 Gm14209 sense_intronic Interval_81871 chr18 65543717 65544100 + 0 NA Intergenic Intergenic -2200 ENSMUSG00000118179.1 ENSMUSG00000118179 ENSMUST00000237213 Gm50247 processed_pseudogene Interval_85485 chr19 27387332 27388162 + 0 NA TTS (ENSMUSG00000041360.8) protein_coding-TTS (ENSMUSG00000041360.8) 21675 ENSMUSG00000117705.1 ENSMUSG00000117705 ENSMUST00000235697 Gm50113 processed_pseudogene Interval_155199 chr8 27397553 27397893 + 0 NA TTS (ENSMUSG00000031492.13) protein_coding-TTS (ENSMUSG00000031492.13) 16221 ENSMUSG00000031491.10 ENSMUSG00000031491 ENSMUST00000033882 Chrna6 protein_coding Interval_31634 chr11 101912344 101912758 + 0 NA Intergenic Intergenic -18177 ENSMUSG00000001493.9 ENSMUSG00000001493 ENSMUST00000057054 Meox1 protein_coding Interval_172263 chrX 12086975 12089052 + 0 NA intron (ENSMUSG00000040363.15, intron 1 of 13) protein_coding-intron (ENSMUSG00000040363.15, intron 1 of 13) 72333 ENSMUSG00000040363.15 ENSMUSG00000040363 ENSMUST00000209776 Bcor protein_coding Interval_53990 chr14 64137214 64138132 + 0 NA intron (ENSMUSG00000054733.9, intron 5 of 5) protein_coding-intron (ENSMUSG00000054733.9, intron 10 of 10) 21359 ENSMUSG00000114284.1 ENSMUSG00000114284 ENSMUST00000225122 9630015K15Rik antisense Interval_126101 chr5 77393955 77394514 + 0 NA TTS (ENSMUSG00000106828.1) antisense-TTS (ENSMUSG00000106828.1) 7635 ENSMUSG00000106828.1 ENSMUSG00000106828 ENSMUST00000202460 Gm34648 antisense Interval_133313 chr5 151592929 151593462 + 0 NA intron (ENSMUSG00000091794.3, intron 1 of 5) protein_coding-intron (ENSMUSG00000091794.3, intron 1 of 5) 12826 ENSMUSG00000091794.3 ENSMUSG00000091794 ENSMUST00000165928 Vmn2r18 protein_coding Interval_71938 chr17 27114051 27115319 + 0 NA intron (ENSMUSG00000042644.9, intron 43 of 57) protein_coding-intron (ENSMUSG00000042644.9, intron 43 of 57) 8508 ENSMUSG00000042644.9 ENSMUSG00000042644 ENSMUST00000235521 Itpr3 protein_coding Interval_114240 chr4 69824221 69825044 + 0 NA Intergenic Intergenic -29315 ENSMUSG00000085627.2 ENSMUSG00000085627 ENSMUST00000119005 Gm11222 processed_pseudogene Interval_51143 chr14 24136914 24137992 + 0 NA intron (ENSMUSG00000021782.14, intron 29 of 31) protein_coding-intron (ENSMUSG00000021782.14, intron 24 of 26) 13093 ENSMUSG00000021782.14 ENSMUSG00000021782 ENSMUST00000169880 Dlg5 protein_coding Interval_141501 chr6 128658066 128658276 + 0 NA promoter-TSS (ENSMUSG00000107425.1) processed_pseudogene-promoter-TSS (ENSMUSG00000107425.1) 61 ENSMUSG00000107425.1 ENSMUSG00000107425 ENSMUST00000203942 Gm44216 processed_pseudogene Interval_163784 chr9 25651305 25651533 + 0 NA Intergenic Intergenic 33944 ENSMUSG00000110857.1 ENSMUSG00000110857 ENSMUST00000215641 Gm48330 processed_pseudogene Interval_147032 chr7 58810920 58811343 + 0 NA intron (ENSMUSG00000025324.8, intron 13 of 20) protein_coding-intron (ENSMUSG00000025324.8, intron 13 of 20) 26807 ENSMUSG00000086926.2 ENSMUSG00000086926 ENSMUST00000117765 Gm6226 processed_pseudogene Interval_61369 chr15 81157130 81158754 + 0 NA intron (ENSMUSG00000042292.18, intron 1 of 14) protein_coding-intron (ENSMUSG00000042292.18, intron 1 of 3) -32911 ENSMUSG00000047938.7 ENSMUSG00000047938 ENSMUST00000138715 4930483J18Rik processed_transcript Interval_131147 chr5 135428748 135429774 + 0 NA TTS (ENSMUSG00000039959.13) protein_coding-TTS (ENSMUSG00000039959.13) -34715 ENSMUSG00000053293.9 ENSMUSG00000053293 ENSMUST00000111171 Pom121 protein_coding Interval_119830 chr4 140258887 140259538 + 0 NA Intergenic Intergenic -12428 ENSMUSG00000040972.8 ENSMUSG00000040972 ENSMUST00000039331 Igsf21 protein_coding Interval_29165 chr11 80912232 80912839 + 0 NA intron (ENSMUSG00000020704.13, intron 3 of 9) protein_coding-intron (ENSMUSG00000020704.13, intron 3 of 9) 54170 ENSMUSG00000053184.15 ENSMUSG00000053184 ENSMUST00000103222 Spaca3 protein_coding Interval_107789 chr3 114990922 114991165 + 0 NA intron (ENSMUSG00000027965.15, intron 1 of 4) protein_coding-intron (ENSMUSG00000027965.15, intron 1 of 5) 86408 ENSMUSG00000027965.15 ENSMUSG00000027965 ENSMUST00000051309 Olfm3 protein_coding Interval_129630 chr5 121423506 121423819 + 0 NA exon (ENSMUSG00000042719.17, exon 12 of 24) protein_coding-exon (ENSMUSG00000042719.17, exon 12 of 24) -16341 ENSMUSG00000042719.17 ENSMUSG00000042719 ENSMUST00000174322 Naa25 protein_coding Interval_137804 chr6 82666530 82667542 + 0 NA intron (ENSMUSG00000030042.15, intron 1 of 3) protein_coding-intron (ENSMUSG00000030042.15, intron 1 of 3) -13096 ENSMUSG00000107453.1 ENSMUSG00000107453 ENSMUST00000203711 Gm44145 antisense Interval_102290 chr3 20740241 20741622 + 0 NA Intergenic Intergenic 43132 ENSMUSG00000103460.1 ENSMUSG00000103460 ENSMUST00000192492 Gm18491 processed_pseudogene Interval_86140 chr19 37004701 37004985 + 0 NA intron (ENSMUSG00000040565.8, intron 35 of 37) protein_coding-intron (ENSMUSG00000040565.8, intron 35 of 37) 44658 ENSMUSG00000040565.8 ENSMUSG00000040565 ENSMUST00000236343 Btaf1 protein_coding Interval_170854 chr9 111243038 111244736 + 0 NA TTS (ENSMUSG00000089082.1) misc_RNA-TTS (ENSMUSG00000089082.1) 980 ENSMUSG00000089082.1 ENSMUSG00000089082 ENSMUST00000158457 Gm24860 misc_RNA Interval_65923 chr16 30267458 30267677 + 0 NA promoter-TSS (ENSMUSG00000023176.9) protein_coding-promoter-TSS (ENSMUSG00000023176.9) -68 ENSMUSG00000023176.9 ENSMUSG00000023176 ENSMUST00000064856 Cpn2 protein_coding Interval_35206 chr12 18140797 18141096 + 0 NA Intergenic Intergenic 3136 ENSMUSG00000113155.1 ENSMUSG00000113155 ENSMUST00000221588 Gm48354 processed_pseudogene Interval_127873 chr5 108448395 108449463 + 0 NA promoter-TSS (ENSMUSG00000029490.4) protein_coding-promoter-TSS (ENSMUSG00000029490.4) -29 ENSMUSG00000029490.4 ENSMUSG00000029490 ENSMUST00000238630 Mfsd7a protein_coding Interval_148561 chr7 82688680 82688957 + 0 NA intron (ENSMUSG00000038563.14, intron 12 of 19) protein_coding-intron (ENSMUSG00000038563.14, intron 12 of 19) -6581 ENSMUSG00000108991.1 ENSMUSG00000108991 ENSMUST00000209142 Gm45807 TEC Interval_105456 chr3 86779611 86780388 + 0 NA intron (ENSMUSG00000028080.16, intron 16 of 17) protein_coding-intron (ENSMUSG00000028080.16, intron 55 of 56) -1346 ENSMUSG00000104108.1 ENSMUSG00000104108 ENSMUST00000194490 Gm37876 antisense Interval_38453 chr12 79141455 79142226 + 0 NA intron (ENSMUSG00000021125.6, intron 2 of 7) protein_coding-intron (ENSMUSG00000021125.6, intron 2 of 7) 10092 ENSMUSG00000111929.1 ENSMUSG00000111929 ENSMUST00000218917 Gm48780 antisense Interval_62196 chr15 88730766 88731151 + 0 NA promoter-TSS (ENSMUSG00000022387.17) protein_coding-promoter-TSS (ENSMUSG00000022387.17) -11803 ENSMUSG00000022387.17 ENSMUSG00000022387 ENSMUST00000139515 Brd1 protein_coding Interval_103344 chr3 39844525 39844724 + 0 NA Intergenic Intergenic 21047 ENSMUSG00000106948.1 ENSMUSG00000106948 ENSMUST00000202316 Gm42785 processed_pseudogene Interval_112423 chr4 41172911 41173843 + 0 NA promoter-TSS (ENSMUSG00000087730.1) snRNA-promoter-TSS (ENSMUSG00000087730.1) -533 ENSMUSG00000087730.1 ENSMUSG00000087730 ENSMUST00000157105 Gm24650 snRNA Interval_136338 chr6 53286504 53288695 + 0 NA intron (ENSMUSG00000053007.9, intron 1 of 5) protein_coding-intron (ENSMUSG00000053007.9, intron 1 of 10) 271 ENSMUSG00000053007.9 ENSMUSG00000053007 ENSMUST00000203641 Creb5 protein_coding Interval_149066 chr7 92820926 92821419 + 0 NA intron (ENSMUSG00000030643.14, intron 1 of 2) protein_coding-intron (ENSMUSG00000030643.14, intron 2 of 4) 42667 ENSMUSG00000109257.1 ENSMUSG00000109257 ENSMUST00000207434 Gm45200 TEC Interval_29932 chr11 87847071 87848187 + 0 NA Intergenic Intergenic -6036 ENSMUSG00000034121.12 ENSMUSG00000034121 ENSMUST00000135369 Mks1 protein_coding Interval_67187 chr16 44225871 44226487 + 0 NA exon (ENSMUSG00000068284.14, exon 7 of 7) protein_coding-exon (ENSMUSG00000068284.14, exon 7 of 7) 52782 ENSMUSG00000068284.14 ENSMUSG00000068284 ENSMUST00000169582 Usf3 protein_coding Interval_94070 chr2 83643973 83645216 + 0 NA promoter-TSS (ENSMUSG00000027091.14) protein_coding-promoter-TSS (ENSMUSG00000027091.14) -12026 ENSMUSG00000027091.14 ENSMUSG00000027091 ENSMUST00000134789 Zc3h15 protein_coding Interval_19689 chr10 108084069 108084412 + 0 NA Intergenic Intergenic 58192 ENSMUSG00000112401.1 ENSMUSG00000112401 ENSMUST00000219675 Gm47999 processed_pseudogene Interval_156333 chr8 47489262 47489737 + 0 NA TTS (ENSMUSG00000038102.15) protein_coding-TTS (ENSMUSG00000038102.15) 38531 ENSMUSG00000038102.15 ENSMUSG00000038102 ENSMUST00000131551 Trappc11 protein_coding Interval_108939 chr3 133502660 133503115 + 0 NA intron (ENSMUSG00000040943.12, intron 2 of 2) protein_coding-intron (ENSMUSG00000040943.12, intron 2 of 10) -22205 ENSMUSG00000040943.12 ENSMUSG00000040943 ENSMUST00000195913 Tet2 protein_coding Interval_58772 chr15 37992405 37993249 + 0 NA intron (ENSMUSG00000037487.7, intron 40 of 58) protein_coding-intron (ENSMUSG00000037487.7, intron 40 of 58) -22212 ENSMUSG00000037487.7 ENSMUSG00000037487 ENSMUST00000227143 Ubr5 protein_coding Interval_8405 chr1 138903604 138904604 + 0 NA Intergenic Intergenic 11939 ENSMUSG00000103850.1 ENSMUSG00000103850 ENSMUST00000195391 Gm3933 processed_pseudogene Interval_94085 chr2 83734653 83735414 + 0 NA intron (ENSMUSG00000027087.11, intron 1 of 2) protein_coding-intron (ENSMUSG00000027087.11, intron 1 of 29) 10576 ENSMUSG00000027087.11 ENSMUSG00000027087 ENSMUST00000131192 Itgav protein_coding Interval_166654 chr9 61632295 61632512 + 0 NA Intergenic Intergenic 122680 ENSMUSG00000111381.1 ENSMUSG00000111381 ENSMUST00000213400 Gm34424 transcribed_processed_pseudogene Interval_119214 chr4 136245736 136249491 + 0 NA promoter-TSS (ENSMUSG00000001604.14) protein_coding-promoter-TSS (ENSMUSG00000001604.14) -360 ENSMUSG00000001604.14 ENSMUSG00000001604 ENSMUST00000143942 Tcea3 protein_coding Interval_15667 chr10 53341057 53342035 + 0 NA TTS (ENSMUSG00000112734.1) sense_intronic-TTS (ENSMUSG00000112734.1) 2688 ENSMUSG00000112734.1 ENSMUSG00000112734 ENSMUST00000220401 Gm47644 sense_intronic Interval_36015 chr12 33302288 33304184 + 0 NA intron (ENSMUSG00000020564.17, intron 1 of 7) protein_coding-intron (ENSMUSG00000020564.17, intron 1 of 7) -11164 ENSMUSG00000020564.17 ENSMUSG00000020564 ENSMUST00000142184 Atxn7l1 protein_coding Interval_90846 chr2 32933665 32934408 + 0 NA intron (ENSMUSG00000026792.16, intron 5 of 7) protein_coding-intron (ENSMUSG00000026792.16, intron 19 of 24) 4763 ENSMUSG00000026792.16 ENSMUSG00000026792 ENSMUST00000138015 Lrsam1 protein_coding Interval_164555 chr9 38603437 38603686 + 0 NA Intergenic Intergenic -1541 ENSMUSG00000047050.2 ENSMUSG00000047050 ENSMUST00000057755 Olfr914 protein_coding Interval_107610 chr3 108870622 108870990 + 0 NA promoter-TSS (ENSMUSG00000045326.13) protein_coding-promoter-TSS (ENSMUSG00000045326.13) -11017 ENSMUSG00000105175.1 ENSMUSG00000105175 ENSMUST00000196867 Gm43097 processed_pseudogene Interval_23846 chr11 27074046 27074311 + 0 NA Intergenic Intergenic -10948 ENSMUSG00000084588.1 ENSMUSG00000084588 ENSMUST00000122639 n-R5s68 rRNA Interval_45530 chr13 55684403 55684758 + 0 NA Intergenic Intergenic -8544 ENSMUSG00000045767.9 ENSMUSG00000045767 ENSMUST00000057844 B230219D22Rik protein_coding Interval_101136 chr2 178316429 178316789 + 0 NA intron (ENSMUSG00000027525.18, intron 8 of 12) protein_coding-intron (ENSMUSG00000027525.18, intron 8 of 12) -10947 ENSMUSG00000027525.18 ENSMUSG00000027525 ENSMUST00000133267 Phactr3 protein_coding Interval_26399 chr11 57632093 57632537 + 0 NA intron (ENSMUSG00000085719.1, intron 2 of 3) antisense-intron (ENSMUSG00000085719.1, intron 2 of 3) -13150 ENSMUSG00000020520.14 ENSMUSG00000020520 ENSMUST00000108846 Galnt10 protein_coding Interval_68545 chr16 78542946 78543287 + 0 NA TTS (ENSMUSG00000022864.14) protein_coding-TTS (ENSMUSG00000022864.14) -17200 ENSMUSG00000116628.1 ENSMUSG00000116628 ENSMUST00000231846 4930478L05Rik antisense Interval_52699 chr14 48700825 48701797 + 0 NA intron (ENSMUSG00000098682.8, intron 3 of 3) lincRNA-intron (ENSMUSG00000098682.8, intron 3 of 4) -2873 ENSMUSG00000115429.1 ENSMUSG00000115429 ENSMUST00000227165 Gm49153 TEC Interval_85607 chr19 29050481 29050923 + 0 NA Intergenic Intergenic 4457 ENSMUSG00000100075.1 ENSMUSG00000100075 ENSMUST00000187897 1700018L02Rik antisense Interval_126103 chr5 77399979 77401097 + 0 NA intron (ENSMUSG00000036256.13, intron 1 of 4) protein_coding-intron (ENSMUSG00000036256.13, intron 1 of 4) 7502 ENSMUSG00000036256.13 ENSMUSG00000036256 ENSMUST00000163898 Igfbp7 protein_coding Interval_167197 chr9 66105261 66106185 + 0 NA promoter-TSS (ENSMUSG00000032382.14) protein_coding-promoter-TSS (ENSMUSG00000032382.14) 1 ENSMUSG00000032382.14 ENSMUSG00000032382 ENSMUST00000145449 Snx1 protein_coding Interval_124518 chr5 49990520 49991172 + 0 NA intron (ENSMUSG00000029090.12, intron 3 of 4) protein_coding-intron (ENSMUSG00000029090.12, intron 10 of 18) -46288 ENSMUSG00000104634.1 ENSMUSG00000104634 ENSMUST00000198627 Gm42461 TEC Interval_147496 chr7 67730693 67731045 + 0 NA exon (ENSMUSG00000030554.16, exon 5 of 5) protein_coding-exon (ENSMUSG00000030554.16, exon 5 of 5) -28448 ENSMUSG00000108871.1 ENSMUSG00000108871 ENSMUST00000207427 Gm45102 TEC Interval_160405 chr8 109020692 109021435 + 0 NA Intergenic Intergenic -54182 ENSMUSG00000097393.8 ENSMUSG00000097393 ENSMUST00000181098 D030068K23Rik lincRNA Interval_110452 chr3 158344734 158345116 + 0 NA intron (ENSMUSG00000028176.13, intron 3 of 24) protein_coding-intron (ENSMUSG00000028176.13, intron 4 of 27) 50511 ENSMUSG00000106448.1 ENSMUSG00000106448 ENSMUST00000196431 Gm43486 TEC Interval_46972 chr13 73833763 73834101 + 0 NA intron (ENSMUSG00000021567.15, intron 3 of 6) protein_coding-intron (ENSMUSG00000021567.15, intron 3 of 9) 4000 ENSMUSG00000066714.6 ENSMUSG00000066714 ENSMUST00000139696 Gm8062 processed_pseudogene Interval_79167 chr18 25280802 25281131 + 0 NA intron (ENSMUSG00000033632.16, intron 1 of 5) protein_coding-intron (ENSMUSG00000033632.16, intron 5 of 9) -110835 ENSMUSG00000089908.1 ENSMUSG00000089908 ENSMUST00000163015 Gm16558 processed_pseudogene Interval_86082 chr19 36440246 36440587 + 0 NA TTS (ENSMUSG00000024805.16) protein_coding-TTS (ENSMUSG00000024805.16) 10741 ENSMUSG00000114235.1 ENSMUSG00000114235 ENSMUST00000224716 F530104D19Rik antisense Interval_93564 chr2 74300188 74301221 + 0 NA intron (ENSMUSG00000085405.1, intron 3 of 4) lincRNA-intron (ENSMUSG00000085405.1, intron 3 of 4) 7013 ENSMUSG00000085405.1 ENSMUSG00000085405 ENSMUST00000153743 4930441J16Rik lincRNA Interval_86752 chr19 43614271 43617122 + 0 NA exon (ENSMUSG00000044220.13, exon 2 of 2) protein_coding-exon (ENSMUSG00000044220.13, exon 2 of 2) 3371 ENSMUSG00000044220.13 ENSMUSG00000044220 ENSMUST00000057178 Nkx2-3 protein_coding Interval_114788 chr4 85267123 85267826 + 0 NA intron (ENSMUSG00000028488.15, intron 1 of 7) protein_coding-intron (ENSMUSG00000028488.15, intron 1 of 8) -21712 ENSMUSG00000081862.1 ENSMUSG00000081862 ENSMUST00000121508 Gm12413 processed_pseudogene Interval_130245 chr5 125177431 125179839 + 0 NA intron (ENSMUSG00000029478.16, intron 1 of 47) protein_coding-intron (ENSMUSG00000029478.16, intron 1 of 46) 91794 ENSMUSG00000106663.1 ENSMUSG00000106663 ENSMUST00000198978 Gm42839 antisense Interval_136404 chr6 54157746 54158019 + 0 NA intron (ENSMUSG00000004633.17, intron 1 of 5) protein_coding-intron (ENSMUSG00000004633.17, intron 1 of 12) -6945 ENSMUSG00000087670.1 ENSMUSG00000087670 ENSMUST00000138767 9530036M11Rik antisense Interval_158212 chr8 79847029 79847243 + 0 NA Intergenic Intergenic 16943 ENSMUSG00000110188.1 ENSMUSG00000110188 ENSMUST00000210391 Gm45432 processed_pseudogene Interval_98702 chr2 154416842 154417585 + 0 NA Intergenic Intergenic -9233 ENSMUSG00000027488.12 ENSMUSG00000027488 ENSMUST00000133018 Snta1 protein_coding Interval_50086 chr14 7893973 7894188 + 0 NA intron (ENSMUSG00000025278.9, intron 14 of 45) protein_coding-intron (ENSMUSG00000025278.9, intron 14 of 45) 9339 ENSMUSG00000025278.9 ENSMUSG00000025278 ENSMUST00000228206 Flnb protein_coding Interval_93918 chr2 79315993 79316676 + 0 NA intron (ENSMUSG00000027009.18, intron 21 of 27) protein_coding-intron (ENSMUSG00000027009.18, intron 21 of 27) -32031 ENSMUSG00000088915.1 ENSMUSG00000088915 ENSMUST00000158290 Gm22606 snRNA Interval_137828 chr6 82794663 82795030 + 0 NA Intergenic Intergenic 10237 ENSMUSG00000109556.1 ENSMUSG00000109556 ENSMUST00000209189 Gm38843 lincRNA Interval_50547 chr14 14904579 14905852 + 0 NA intron (ENSMUSG00000042567.20, intron 23 of 35) protein_coding-intron (ENSMUSG00000042567.20, intron 5 of 12) 101800 ENSMUSG00000042567.20 ENSMUSG00000042567 ENSMUST00000136826 Nek10 protein_coding Interval_142923 chr6 146982157 146982380 + 0 NA intron (ENSMUSG00000016487.15, intron 2 of 3) protein_coding-intron (ENSMUSG00000016487.15, intron 4 of 26) 5785 ENSMUSG00000016487.15 ENSMUSG00000016487 ENSMUST00000136837 Ppfibp1 protein_coding Interval_8838 chr1 151464900 151465149 + 0 NA intron (ENSMUSG00000026484.13, intron 3 of 3) protein_coding-intron (ENSMUSG00000026484.13, intron 3 of 3) 11138 ENSMUSG00000026484.13 ENSMUSG00000026484 ENSMUST00000187991 Rnf2 protein_coding Interval_82203 chr18 69018081 69018413 + 0 NA Intergenic Intergenic 4026 ENSMUSG00000098366.1 ENSMUSG00000098366 ENSMUST00000184434 Mir145b miRNA Interval_144019 chr7 19006639 19007058 + 0 NA TTS (ENSMUSG00000044030.4) protein_coding-TTS (ENSMUSG00000044030.4) 2804 ENSMUSG00000044030.4 ENSMUSG00000044030 ENSMUST00000053713 Irf2bp1 protein_coding Interval_63936 chr16 4655853 4656625 + 0 NA intron (ENSMUSG00000039637.15, intron 7 of 24) protein_coding-intron (ENSMUSG00000039637.15, intron 7 of 27) 16271 ENSMUSG00000039646.5 ENSMUSG00000039646 ENSMUST00000138044 Vasn protein_coding Interval_38044 chr12 74823619 74823994 + 0 NA Intergenic Intergenic -1539 ENSMUSG00000113845.1 ENSMUSG00000113845 ENSMUST00000223498 Gm39473 lincRNA Interval_172432 chrX 19472043 19472478 + 0 NA Intergenic Intergenic 9059 ENSMUSG00000068149.5 ENSMUSG00000068149 ENSMUST00000089246 Tex13c3 protein_coding Interval_59743 chr15 58992578 58994557 + 0 NA intron (ENSMUSG00000022353.10, intron 3 of 14) protein_coding-intron (ENSMUSG00000022353.10, intron 3 of 14) 9431 ENSMUSG00000115062.1 ENSMUSG00000115062 ENSMUST00000226216 4930544F09Rik antisense Interval_96767 chr2 127937246 127937492 + 0 NA intron (ENSMUSG00000027380.10, intron 2 of 10) protein_coding-intron (ENSMUSG00000027380.10, intron 9 of 17) 45381 ENSMUSG00000093203.1 ENSMUSG00000093203 ENSMUST00000175462 Gm22411 miRNA Interval_75423 chr17 66473165 66473410 + 0 NA Intergenic Intergenic 23433 ENSMUSG00000117003.1 ENSMUSG00000117003 ENSMUST00000233518 Gm49937 bidirectional_promoter_lncRNA Interval_53404 chr14 57036050 57037031 + 0 NA TTS (ENSMUSG00000048582.7) protein_coding-TTS (ENSMUSG00000048582.7) 21183 ENSMUSG00000048582.7 ENSMUSG00000048582 ENSMUST00000223792 Gja3 protein_coding Interval_151707 chr7 126179300 126179598 + 0 NA TTS (ENSMUSG00000000131.15) protein_coding-TTS (ENSMUSG00000000131.15) 3325 ENSMUSG00000057945.3 ENSMUSG00000057945 ENSMUST00000169993 Gm17136 processed_pseudogene Interval_38987 chr12 84299411 84299643 + 0 NA intron (ENSMUSG00000072946.12, intron 4 of 5) protein_coding-intron (ENSMUSG00000072946.12, intron 4 of 9) 14128 ENSMUSG00000072946.12 ENSMUSG00000072946 ENSMUST00000123693 Ptgr2 protein_coding Interval_63302 chr15 100208228 100209091 + 0 NA intron (ENSMUSG00000023026.16, intron 35 of 37) protein_coding-intron (ENSMUSG00000023026.16, intron 30 of 32) -13348 ENSMUSG00000116366.1 ENSMUSG00000116366 ENSMUST00000229080 Gm49475 antisense Interval_55452 chr14 87453909 87454150 + 0 NA intron (ENSMUSG00000022019.16, intron 1 of 11) protein_coding-intron (ENSMUSG00000022019.16, intron 1 of 13) -12339 ENSMUSG00000115484.1 ENSMUSG00000115484 ENSMUST00000227005 Gm33121 processed_pseudogene Interval_2530 chr1 39976949 39977321 + 0 NA TTS (ENSMUSG00000026074.15) protein_coding-TTS (ENSMUSG00000026074.15) 73233 ENSMUSG00000102985.1 ENSMUSG00000102985 ENSMUST00000193054 4930456G14Rik TEC Interval_71641 chr17 25082126 25083596 + 0 NA intron (ENSMUSG00000024168.8, intron 1 of 3) protein_coding-intron (ENSMUSG00000024169.16, intron 18 of 29) 730 ENSMUSG00000024168.8 ENSMUSG00000024168 ENSMUST00000153745 Tmem204 protein_coding Interval_48170 chr13 96941034 96942164 + 0 NA intron (ENSMUSG00000091387.2, intron 2 of 2) protein_coding-intron (ENSMUSG00000091387.2, intron 2 of 2) 9315 ENSMUSG00000114154.1 ENSMUSG00000114154 ENSMUST00000222094 Gm48597 antisense Interval_150282 chr7 109255196 109256186 + 0 NA Intergenic Intergenic -31491 ENSMUSG00000109001.1 ENSMUSG00000109001 ENSMUST00000208274 Gm45024 lincRNA Interval_108326 chr3 123885003 123885329 + 0 NA Intergenic Intergenic 99938 ENSMUSG00000081939.2 ENSMUSG00000081939 ENSMUST00000118055 Gm15399 processed_pseudogene Interval_89978 chr2 27008671 27010502 + 0 NA promoter-TSS (ENSMUSG00000015488.14) protein_coding-promoter-TSS (ENSMUSG00000015488.14) 3015 ENSMUSG00000014852.16 ENSMUSG00000014852 ENSMUST00000147216 Adamts13 protein_coding Interval_69490 chr16 93839407 93840608 + 0 NA intron (ENSMUSG00000039456.10, intron 1 of 10) protein_coding-intron (ENSMUSG00000039456.10, intron 1 of 16) -6988 ENSMUSG00000116927.1 ENSMUSG00000116927 ENSMUST00000231503 Gm30881 antisense Interval_69135 chr16 90867963 90869276 + 0 NA intron (ENSMUSG00000039903.18, intron 4 of 9) protein_coding-intron (ENSMUSG00000039903.18, intron 2 of 7) -17656 ENSMUSG00000116543.1 ENSMUSG00000116543 ENSMUST00000232254 Gm36363 antisense Interval_115120 chr4 91168880 91169213 + 0 NA Intergenic Intergenic 12364 ENSMUSG00000081876.1 ENSMUSG00000081876 ENSMUST00000119935 Gm12644 processed_pseudogene Interval_159671 chr8 96507253 96507923 + 0 NA Intergenic Intergenic -4754 ENSMUSG00000110717.1 ENSMUSG00000110717 ENSMUST00000212351 1700047G07Rik lincRNA Interval_168638 chr9 84774272 84774471 + 0 NA promoter-TSS (ENSMUSG00000099724.2) lincRNA-promoter-TSS (ENSMUSG00000099724.2) -36 ENSMUSG00000099724.2 ENSMUSG00000099724 ENSMUST00000216019 4930554C24Rik lincRNA Interval_25791 chr11 51735620 51736273 + 0 NA intron (ENSMUSG00000036391.16, intron 3 of 7) protein_coding-intron (ENSMUSG00000036391.16, intron 3 of 22) 1976 ENSMUSG00000084744.1 ENSMUSG00000084744 ENSMUST00000122795 Gm25291 snoRNA Interval_106792 chr3 100866853 100868239 + 0 NA intron (ENSMUSG00000051076.8, intron 1 of 5) protein_coding-intron (ENSMUSG00000051076.8, intron 1 of 5) 42087 ENSMUSG00000051076.8 ENSMUSG00000051076 ENSMUST00000054791 Vtcn1 protein_coding Interval_145979 chr7 42825111 42827179 + 0 NA intron (ENSMUSG00000092225.1, intron 1 of 3) protein_coding-intron (ENSMUSG00000092225.1, intron 1 of 3) -32620 ENSMUSG00000091926.3 ENSMUSG00000091926 ENSMUST00000169130 Vmn2r62 protein_coding Interval_46209 chr13 62521686 62521966 + 0 NA intron (ENSMUSG00000074865.11, intron 1 of 2) protein_coding-intron (ENSMUSG00000055228.8, intron 1 of 2) 7134 ENSMUSG00000113428.1 ENSMUSG00000113428 ENSMUST00000221988 Gm7664 processed_pseudogene Interval_154968 chr8 25353650 25354511 + 0 NA Intergenic Intergenic -44940 ENSMUSG00000110172.1 ENSMUSG00000110172 ENSMUST00000211376 Gm39147 transcribed_processed_pseudogene Interval_162712 chr9 7957889 7958362 + 0 NA intron (ENSMUSG00000053110.13, intron 4 of 8) protein_coding-intron (ENSMUSG00000053110.13, intron 4 of 8) -7713 ENSMUSG00000092185.1 ENSMUSG00000092185 ENSMUST00000174760 Gm20416 processed_transcript Interval_64498 chr16 12767915 12769088 + 0 NA intron (ENSMUSG00000116520.1, intron 2 of 11) lincRNA-intron (ENSMUSG00000116520.1, intron 2 of 11) -7135 ENSMUSG00000091416.2 ENSMUSG00000091416 ENSMUST00000171185 Gm6327 processed_pseudogene Interval_9645 chr1 160714724 160714977 + 0 NA intron (ENSMUSG00000026721.16, intron 8 of 12) protein_coding-intron (ENSMUSG00000026721.16, intron 7 of 20) 11831 ENSMUSG00000103200.1 ENSMUSG00000103200 ENSMUST00000193191 Gm37328 sense_intronic Interval_22000 chr11 5699102 5700514 + 0 NA Intergenic Intergenic 7879 ENSMUSG00000020477.10 ENSMUSG00000020477 ENSMUST00000123697 Mrps24 protein_coding Interval_73999 chr17 45939634 45940639 + 0 NA Intergenic Intergenic -21723 ENSMUSG00000117040.1 ENSMUSG00000117040 ENSMUST00000233512 Gm49805 lincRNA Interval_44275 chr13 43268903 43269171 + 0 NA intron (ENSMUSG00000051335.6, intron 1 of 1) protein_coding-intron (ENSMUSG00000051335.6, intron 1 of 1) 34368 ENSMUSG00000051335.6 ENSMUSG00000051335 ENSMUST00000222779 Gfod1 protein_coding Interval_143093 chr6 149307573 149307985 + 0 NA Intergenic Intergenic -3637 ENSMUSG00000032712.16 ENSMUSG00000032712 ENSMUST00000189837 Resf1 protein_coding Interval_61492 chr15 81959740 81961273 + 0 NA intron (ENSMUSG00000022474.15, intron 1 of 4) protein_coding-intron (ENSMUSG00000022474.15, intron 1 of 7) 327 ENSMUSG00000022474.15 ENSMUSG00000022474 ENSMUST00000147442 Pmm1 protein_coding Interval_28709 chr11 77864828 77865171 + 0 NA TTS (ENSMUSG00000000631.20) protein_coding-TTS (ENSMUSG00000000631.20) 19545 ENSMUSG00000017453.4 ENSMUSG00000017453 ENSMUST00000155401 Pipox protein_coding Interval_17827 chr10 80292070 80294055 + 0 NA intron (ENSMUSG00000063457.14, intron 2 of 3) protein_coding-intron (ENSMUSG00000063457.14, intron 1 of 2) 609 ENSMUSG00000063457.14 ENSMUSG00000063457 ENSMUST00000062674 Rps15 protein_coding Interval_134490 chr6 29100155 29100403 + 0 NA Intergenic Intergenic 13327 ENSMUSG00000064436.1 ENSMUSG00000064436 ENSMUST00000082502 Gm25589 snRNA Interval_58830 chr15 38391094 38392918 + 0 NA intron (ENSMUSG00000115405.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000115405.1, intron 1 of 1) 12148 ENSMUSG00000115405.1 ENSMUSG00000115405 ENSMUST00000227422 Gm41307 lincRNA Interval_4421 chr1 74049573 74049783 + 0 NA intron (ENSMUSG00000055322.16, intron 3 of 32) protein_coding-intron (ENSMUSG00000055322.16, intron 3 of 34) 48998 ENSMUSG00000055322.16 ENSMUSG00000055322 ENSMUST00000190599 Tns1 protein_coding Interval_89354 chr2 19682894 19683232 + 0 NA intron (ENSMUSG00000087246.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000087246.1, intron 1 of 1) 3094 ENSMUSG00000087246.1 ENSMUSG00000087246 ENSMUST00000135767 Gm13346 lincRNA Interval_142748 chr6 145316978 145317167 + 0 NA promoter-TSS (ENSMUSG00000083962.1) processed_pseudogene-promoter-TSS (ENSMUSG00000083962.1) -464 ENSMUSG00000083962.1 ENSMUSG00000083962 ENSMUST00000118804 Gm15707 processed_pseudogene Interval_140101 chr6 114187064 114187369 + 0 NA intron (ENSMUSG00000030307.8, intron 5 of 13) protein_coding-intron (ENSMUSG00000030307.8, intron 5 of 13) -17693 ENSMUSG00000108186.1 ENSMUSG00000108186 ENSMUST00000204938 Gm8132 processed_pseudogene Interval_3700 chr1 61296955 61298405 + 0 NA Intergenic Intergenic -4229 ENSMUSG00000085248.2 ENSMUSG00000085248 ENSMUST00000128274 Gm11587 lincRNA Interval_82040 chr18 67315869 67316260 + 0 NA TTS (ENSMUSG00000024525.7) protein_coding-TTS (ENSMUSG00000024525.7) 7475 ENSMUSG00000024525.7 ENSMUSG00000024525 ENSMUST00000237149 Impa2 protein_coding Interval_153977 chr8 11598998 11599204 + 0 NA Intergenic Intergenic 25525 ENSMUSG00000031508.14 ENSMUSG00000031508 ENSMUST00000210876 Ankrd10 protein_coding Interval_33415 chr11 116436638 116437546 + 0 NA intron (ENSMUSG00000050628.6, intron 1 of 1) protein_coding-intron (ENSMUSG00000050628.6, intron 2 of 2) 2583 ENSMUSG00000050628.6 ENSMUSG00000050628 ENSMUST00000144310 Ubald2 protein_coding Interval_135768 chr6 47181299 47183283 + 0 NA intron (ENSMUSG00000039419.17, intron 20 of 23) protein_coding-intron (ENSMUSG00000039419.17, intron 20 of 23) 137135 ENSMUSG00000107952.1 ENSMUSG00000107952 ENSMUST00000203583 Gm6352 processed_pseudogene Interval_48044 chr13 95526841 95527765 + 0 NA Intergenic Intergenic -2076 ENSMUSG00000021678.9 ENSMUSG00000021678 ENSMUST00000022185 F2rl1 protein_coding Interval_130822 chr5 130950437 130951526 + 0 NA intron (ENSMUSG00000034040.16, intron 6 of 10) protein_coding-intron (ENSMUSG00000034040.16, intron 6 of 10) 9054 ENSMUSG00000107295.1 ENSMUSG00000107295 ENSMUST00000201249 Gm42896 TEC Interval_106748 chr3 100394462 100396256 + 0 NA Intergenic Intergenic -18201 ENSMUSG00000081440.2 ENSMUSG00000081440 ENSMUST00000121385 Gm12464 processed_pseudogene Interval_157469 chr8 70560284 70560767 + 0 NA intron (ENSMUSG00000070002.7, intron 1 of 11) protein_coding-intron (ENSMUSG00000070002.7, intron 1 of 11) 21068 ENSMUSG00000070002.7 ENSMUSG00000070002 ENSMUST00000093454 Ell protein_coding Interval_8040 chr1 135374187 135375472 + 0 NA intron (ENSMUSG00000041889.7, intron 1 of 1) protein_coding-intron (ENSMUSG00000041889.7, intron 1 of 4) -1379 ENSMUSG00000041889.7 ENSMUSG00000041889 ENSMUST00000159181 Shisa4 protein_coding Interval_144725 chr7 27801158 27801397 + 0 NA Intergenic Intergenic -5919 ENSMUSG00000030604.9 ENSMUSG00000030604 ENSMUST00000080175 Zfp626 protein_coding Interval_123742 chr5 35090876 35091196 + 0 NA TTS (ENSMUSG00000029103.16) protein_coding-TTS (ENSMUSG00000029103.16) 11478 ENSMUSG00000029103.16 ENSMUSG00000029103 ENSMUST00000132754 Lrpap1 protein_coding Interval_72332 chr17 29248670 29250039 + 0 NA Intergenic Intergenic 3349 ENSMUSG00000024007.15 ENSMUSG00000024007 ENSMUST00000129157 Ppil1 protein_coding Interval_25108 chr11 44133143 44133369 + 0 NA intron (ENSMUSG00000087172.1, intron 6 of 6) lincRNA-intron (ENSMUSG00000087172.1, intron 6 of 6) 133953 ENSMUSG00000086738.1 ENSMUSG00000086738 ENSMUST00000145584 Gm12154 lincRNA Interval_53854 chr14 62786527 62786874 + 0 NA Intergenic Intergenic 7003 ENSMUSG00000115371.1 ENSMUSG00000115371 ENSMUST00000226895 Gm18146 processed_pseudogene Interval_8213 chr1 136537005 136537309 + 0 NA Intergenic Intergenic -4448 ENSMUSG00000104414.1 ENSMUSG00000104414 ENSMUST00000194018 Gm37799 lincRNA Interval_170972 chr9 113419769 113420360 + 0 NA promoter-TSS (ENSMUSG00000111532.1) lincRNA-promoter-TSS (ENSMUSG00000111532.1) -4 ENSMUSG00000111532.1 ENSMUSG00000111532 ENSMUST00000214286 Gm36485 lincRNA Interval_22355 chr11 9061279 9061529 + 0 NA intron (ENSMUSG00000040978.4, intron 6 of 6) protein_coding-intron (ENSMUSG00000040978.4, intron 6 of 6) -12413 ENSMUSG00000040985.13 ENSMUSG00000040985 ENSMUST00000102909 Sun3 protein_coding Interval_82455 chr18 74192886 74193533 + 0 NA Intergenic Intergenic 14538 ENSMUSG00000036223.16 ENSMUSG00000036223 ENSMUST00000237276 Ska1 protein_coding Interval_163299 chr9 20688981 20690345 + 0 NA intron (ENSMUSG00000032172.8, intron 1 of 5) protein_coding-intron (ENSMUSG00000032172.8, intron 1 of 5) 37274 ENSMUSG00000032172.8 ENSMUSG00000032172 ENSMUST00000215039 Olfm2 protein_coding Interval_30672 chr11 95805122 95806043 + 0 NA intron (ENSMUSG00000075595.9, intron 5 of 6) protein_coding-intron (ENSMUSG00000075595.9, intron 5 of 6) -25181 ENSMUSG00000050860.6 ENSMUSG00000050860 ENSMUST00000176538 Phospho1 protein_coding Interval_133000 chr5 149195286 149195584 + 0 NA intron (ENSMUSG00000041264.16, intron 1 of 6) protein_coding-intron (ENSMUSG00000041264.16, intron 4 of 8) 6576 ENSMUSG00000041264.16 ENSMUSG00000041264 ENSMUST00000150921 Uspl1 protein_coding Interval_8816 chr1 151365475 151365863 + 0 NA Intergenic Intergenic 4422 ENSMUSG00000023150.14 ENSMUSG00000023150 ENSMUST00000190872 Ivns1abp protein_coding Interval_152008 chr7 128231687 128232155 + 0 NA Intergenic Intergenic -5421 ENSMUSG00000042178.6 ENSMUSG00000042178 ENSMUST00000044660 Armc5 protein_coding Interval_82570 chr18 75217997 75218248 + 0 NA intron (ENSMUSG00000035765.10, intron 14 of 16) protein_coding-intron (ENSMUSG00000035765.10, intron 14 of 16) -35308 ENSMUSG00000094153.2 ENSMUSG00000094153 ENSMUST00000179328 Gm8807 processed_pseudogene Interval_51846 chr14 32825076 32826042 + 0 NA Intergenic Intergenic -8762 ENSMUSG00000078127.3 ENSMUSG00000078127 ENSMUST00000227787 Fam170b protein_coding Interval_150220 chr7 108280596 108281040 + 0 NA Intergenic Intergenic 4072 ENSMUSG00000109639.1 ENSMUSG00000109639 ENSMUST00000210404 Olfr489-ps1 unprocessed_pseudogene Interval_112571 chr4 43322156 43322402 + 0 NA intron (ENSMUSG00000028457.18, intron 7 of 8) protein_coding-intron (ENSMUSG00000028457.18, intron 10 of 14) 55094 ENSMUSG00000028457.18 ENSMUSG00000028457 ENSMUST00000102953 Atp8b5 protein_coding Interval_118474 chr4 131900146 131901509 + 0 NA exon (ENSMUSG00000028911.16, exon 6 of 6) protein_coding-exon (ENSMUSG00000028911.16, exon 6 of 6) 2484 ENSMUSG00000083013.1 ENSMUSG00000083013 ENSMUST00000121250 Gm12978 transcribed_processed_pseudogene Interval_104050 chr3 57700111 57700666 + 0 NA Intergenic Intergenic -2912 ENSMUSG00000106635.1 ENSMUSG00000106635 ENSMUST00000199989 Gm43098 TEC Interval_63321 chr15 100297925 100298785 + 0 NA TTS (ENSMUSG00000116182.1) processed_pseudogene-TTS (ENSMUSG00000116182.1) 1184 ENSMUSG00000116182.1 ENSMUSG00000116182 ENSMUST00000230632 Gm33666 processed_pseudogene Interval_132661 chr5 147010945 147011726 + 0 NA Intergenic Intergenic 7700 ENSMUSG00000016520.7 ENSMUSG00000016520 ENSMUST00000123092 Lnx2 protein_coding Interval_60114 chr15 65863214 65863838 + 0 NA intron (ENSMUSG00000015002.18, intron 19 of 22) protein_coding-intron (ENSMUSG00000015002.18, intron 19 of 22) 5657 ENSMUSG00000092495.1 ENSMUSG00000092495 ENSMUST00000174002 Gm20405 processed_transcript Interval_61788 chr15 84167632 84169217 + 0 NA TTS (ENSMUSG00000098882.1) miRNA-TTS (ENSMUSG00000098882.1) 154 ENSMUSG00000098882.1 ENSMUSG00000098882 ENSMUST00000184924 Mir6392 miRNA Interval_145974 chr7 42765978 42766212 + 0 NA intron (ENSMUSG00000091926.3, intron 5 of 5) protein_coding-intron (ENSMUSG00000091926.3, intron 5 of 5) 15681 ENSMUSG00000092238.1 ENSMUSG00000092238 ENSMUST00000173237 Gm6004 processed_pseudogene Interval_63695 chr15 102912945 102913581 + 0 NA Intergenic Intergenic -7840 ENSMUSG00000001655.6 ENSMUSG00000001655 ENSMUST00000001700 Hoxc13 protein_coding Interval_173589 chrX 100400296 100401368 + 0 NA TTS (ENSMUSG00000059327.9) protein_coding-TTS (ENSMUSG00000059327.9) 15689 ENSMUSG00000059327.9 ENSMUSG00000059327 ENSMUST00000123547 Eda protein_coding Interval_43974 chr13 38589443 38590502 + 0 NA Intergenic Intergenic 35107 ENSMUSG00000114866.1 ENSMUSG00000114866 ENSMUST00000225387 Gm40922 lincRNA Interval_11324 chr1 180958515 180959414 + 0 NA promoter-TSS (ENSMUSG00000085563.2) antisense-promoter-TSS (ENSMUSG00000085563.2) -815 ENSMUSG00000085563.2 ENSMUSG00000085563 ENSMUST00000128545 2210411M09Rik antisense Interval_32961 chr11 113381735 113381976 + 0 NA intron (ENSMUSG00000041654.15, intron 5 of 5) protein_coding-intron (ENSMUSG00000041654.15, intron 6 of 10) -86122 ENSMUSG00000078251.2 ENSMUSG00000078251 ENSMUST00000105048 Gm16487 pseudogene Interval_111368 chr4 19867408 19867657 + 0 NA Intergenic Intergenic 48807 ENSMUSG00000041052.8 ENSMUSG00000041052 ENSMUST00000035890 Slc7a13 protein_coding Interval_98728 chr2 154532767 154533609 + 0 NA intron (ENSMUSG00000038533.15, intron 1 of 1) protein_coding-intron (ENSMUSG00000038533.15, intron 10 of 10) -13897 ENSMUSG00000038523.10 ENSMUSG00000038523 ENSMUST00000109709 1700003F12Rik protein_coding Interval_9685 chr1 161019584 161020989 + 0 NA exon (ENSMUSG00000043467.19, exon 5 of 5) protein_coding-exon (ENSMUSG00000043467.19, exon 5 of 5) -10296 ENSMUSG00000104016.1 ENSMUSG00000104016 ENSMUST00000194567 Gm37362 antisense Interval_73048 chr17 34386430 34387141 + 0 NA TTS (ENSMUSG00000062638.11) protein_coding-TTS (ENSMUSG00000062638.11) -5618 ENSMUSG00000083522.1 ENSMUSG00000083522 ENSMUST00000121290 Gm15321 processed_pseudogene Interval_67800 chr16 57269847 57270144 + 0 NA exon (ENSMUSG00000022753.15, exon 6 of 6) protein_coding-exon (ENSMUSG00000022753.15, exon 6 of 6) -4190 ENSMUSG00000116675.1 ENSMUSG00000116675 ENSMUST00000231600 Gm49581 processed_pseudogene Interval_71972 chr17 27333804 27334025 + 0 NA intron (ENSMUSG00000073430.5, intron 1 of 6) processed_transcript-intron (ENSMUSG00000073430.5, intron 1 of 3) 5529 ENSMUSG00000099237.1 ENSMUSG00000099237 ENSMUST00000185107 Mir7216 miRNA Interval_73495 chr17 38015788 38017019 + 0 NA Intergenic Intergenic 6756 ENSMUSG00000092390.1 ENSMUSG00000092390 ENSMUST00000173035 Gm20541 unprocessed_pseudogene Interval_53816 chr14 62245655 62245929 + 0 NA Intergenic Intergenic -41440 ENSMUSG00000098096.1 ENSMUSG00000098096 ENSMUST00000183203 Gm26969 lincRNA Interval_96739 chr2 127590244 127591084 + 0 NA intron (ENSMUSG00000027374.12, intron 1 of 4) protein_coding-intron (ENSMUSG00000027374.12, intron 1 of 11) 223 ENSMUSG00000027374.12 ENSMUSG00000027374 ENSMUST00000129066 Mrps5 protein_coding Interval_27731 chr11 69714697 69716232 + 0 NA Intergenic Intergenic 15120 ENSMUSG00000081333.1 ENSMUSG00000081333 ENSMUST00000120581 Gm12307 processed_pseudogene Interval_82678 chr18 75874725 75874997 + 0 NA intron (ENSMUSG00000044646.15, intron 1 of 5) protein_coding-intron (ENSMUSG00000044646.15, intron 1 of 4) 54646 ENSMUSG00000044646.15 ENSMUSG00000044646 ENSMUST00000167921 Zbtb7c protein_coding Interval_23164 chr11 20248854 20250003 + 0 NA promoter-TSS (ENSMUSG00000044066.14) protein_coding-promoter-TSS (ENSMUSG00000044066.14) 1 ENSMUSG00000044066.14 ENSMUSG00000044066 ENSMUST00000161218 Cep68 protein_coding Interval_7723 chr1 133282236 133282617 + 0 NA TTS (ENSMUSG00000041757.17) protein_coding-TTS (ENSMUSG00000041757.17) -12618 ENSMUSG00000101693.1 ENSMUSG00000101693 ENSMUST00000189590 Gm19461 antisense Interval_143719 chr7 15912125 15912793 + 0 NA Intergenic Intergenic 5771 ENSMUSG00000106050.1 ENSMUSG00000106050 ENSMUST00000197717 Ass-ps1 processed_pseudogene Interval_54020 chr14 64568479 64569067 + 0 NA Intergenic Intergenic -20922 ENSMUSG00000097545.7 ENSMUSG00000097545 ENSMUST00000186703 Mir124a-1hg lincRNA Interval_203 KQ030491.1 212 1516 + 0 NA NA NA NA NA Interval_141677 chr6 133188249 133188538 + 0 NA Intergenic Intergenic -3399 ENSMUSG00000095447.1 ENSMUSG00000095447 ENSMUST00000179169 Gm23403 miRNA Interval_134806 chr6 31687165 31687533 + 0 NA intron (ENSMUSG00000086804.8, intron 4 of 6) lincRNA-intron (ENSMUSG00000086804.8, intron 2 of 2) 19641 ENSMUSG00000107010.1 ENSMUSG00000107010 ENSMUST00000202780 Gm43293 lincRNA Interval_135499 chr6 39676606 39677037 + 0 NA intron (ENSMUSG00000002413.15, intron 3 of 17) protein_coding-intron (ENSMUSG00000002413.15, intron 4 of 21) -11742 ENSMUSG00000002413.15 ENSMUSG00000002413 ENSMUST00000169647 Braf protein_coding Interval_114979 chr4 88012049 88012240 + 0 NA intron (ENSMUSG00000028496.17, intron 2 of 5) protein_coding-intron (ENSMUSG00000028496.17, intron 2 of 10) -21357 ENSMUSG00000084809.1 ENSMUSG00000084809 ENSMUST00000130576 Gm12631 antisense Interval_7402 chr1 131053027 131053779 + 0 NA TTS (ENSMUSG00000016528.10) protein_coding-TTS (ENSMUSG00000016528.10) 19123 ENSMUSG00000016528.10 ENSMUSG00000016528 ENSMUST00000188459 Mapkapk2 protein_coding Interval_14265 chr10 30069181 30069625 + 0 NA Intergenic Intergenic 15931 ENSMUSG00000111001.1 ENSMUSG00000111001 ENSMUST00000215786 Gm8767 processed_pseudogene Interval_114610 chr4 83207999 83208954 + 0 NA Intergenic Intergenic 14488 ENSMUSG00000083245.1 ENSMUSG00000083245 ENSMUST00000117732 Gm11185 processed_pseudogene Interval_141732 chr6 134111290 134112365 + 0 NA intron (ENSMUSG00000030199.16, intron 2 of 8) protein_coding-intron (ENSMUSG00000030199.16, intron 1 of 7) 27226 ENSMUSG00000108238.1 ENSMUSG00000108238 ENSMUST00000204572 Gm43984 TEC Interval_94712 chr2 93615442 93615793 + 0 NA Intergenic Intergenic -26771 ENSMUSG00000040310.12 ENSMUSG00000040310 ENSMUST00000111254 Alx4 protein_coding Interval_23569 chr11 23436036 23436858 + 0 NA intron (ENSMUSG00000056342.16, intron 49 of 79) protein_coding-intron (ENSMUSG00000056342.16, intron 11 of 23) 43220 ENSMUSG00000065591.1 ENSMUSG00000065591 ENSMUST00000083657 Gm22753 snRNA Interval_152834 chr7 138519198 138520321 + 0 NA Intergenic Intergenic -34483 ENSMUSG00000110037.1 ENSMUSG00000110037 ENSMUST00000209503 4930543N07Rik lincRNA Interval_84213 chr19 8802025 8803078 + 0 NA promoter-TSS (ENSMUSG00000071661.7) protein_coding-promoter-TSS (ENSMUSG00000071661.7) -4 ENSMUSG00000071661.7 ENSMUSG00000071661 ENSMUST00000172175 Zbtb3 protein_coding Interval_8030 chr1 135298895 135299117 + 0 NA exon (ENSMUSG00000062580.9, exon 6 of 6) protein_coding-exon (ENSMUSG00000062580.9, exon 6 of 6) 10833 ENSMUSG00000062580.9 ENSMUSG00000062580 ENSMUST00000125454 Timm17a protein_coding Interval_51130 chr14 23944023 23944405 + 0 NA intron (ENSMUSG00000063142.15, intron 1 of 16) protein_coding-intron (ENSMUSG00000063142.15, intron 1 of 29) -60777 ENSMUSG00000114953.1 ENSMUSG00000114953 ENSMUST00000223837 4930519K11Rik bidirectional_promoter_lncRNA Interval_49599 chr13 113368541 113369779 + 0 NA exon (ENSMUSG00000021763.17, exon 5 of 6) protein_coding-exon (ENSMUSG00000021763.17, exon 5 of 6) -33928 ENSMUSG00000088814.1 ENSMUSG00000088814 ENSMUST00000158189 Gm22385 rRNA Interval_39506 chr12 88819347 88819582 + 0 NA intron (ENSMUSG00000066392.12, intron 2 of 7) protein_coding-intron (ENSMUSG00000066392.12, intron 2 of 3) 187195 ENSMUSG00000113997.1 ENSMUSG00000113997 ENSMUST00000222440 1700040E09Rik lincRNA Interval_23437 chr11 22617374 22618010 + 0 NA exon (ENSMUSG00000086256.1, exon 1 of 2) lincRNA-exon (ENSMUSG00000086256.1, exon 1 of 2) 284 ENSMUSG00000086256.1 ENSMUSG00000086256 ENSMUST00000142151 Gm12052 lincRNA Interval_95493 chr2 110191870 110193159 + 0 NA Intergenic Intergenic -4375 ENSMUSG00000085444.1 ENSMUSG00000085444 ENSMUST00000130416 Gm13936 antisense Interval_61545 chr15 82258971 82259984 + 0 NA intron (ENSMUSG00000068099.5, intron 1 of 1) protein_coding-intron (ENSMUSG00000068099.5, intron 1 of 1) 3454 ENSMUSG00000068099.5 ENSMUSG00000068099 ENSMUST00000143238 1500009C09Rik protein_coding Interval_13194 chr10 12949452 12949666 + 0 NA intron (ENSMUSG00000039232.12, intron 1 of 2) protein_coding-intron (ENSMUSG00000039232.12, intron 1 of 2) 14699 ENSMUSG00000039232.12 ENSMUSG00000039232 ENSMUST00000219727 Stx11 protein_coding Interval_40169 chr12 102243801 102244152 + 0 NA intron (ENSMUSG00000041771.14, intron 12 of 16) protein_coding-intron (ENSMUSG00000041771.14, intron 12 of 16) 9711 ENSMUSG00000105037.1 ENSMUSG00000105037 ENSMUST00000200458 Gm25203 snoRNA Interval_113005 chr4 46746742 46747847 + 0 NA intron (ENSMUSG00000039809.10, intron 8 of 18) protein_coding-intron (ENSMUSG00000039809.10, intron 8 of 18) -97085 ENSMUSG00000039813.14 ENSMUSG00000039813 ENSMUST00000107750 Tbc1d2 protein_coding Interval_39417 chr12 87288136 87290332 + 0 NA intron (ENSMUSG00000050671.12, intron 1 of 5) protein_coding-intron (ENSMUSG00000050671.12, intron 1 of 5) -2161 ENSMUSG00000050671.12 ENSMUSG00000050671 ENSMUST00000145714 Ism2 protein_coding Interval_172491 chrX 21341916 21342325 + 0 NA Intergenic Intergenic -7393 ENSMUSG00000087586.1 ENSMUSG00000087586 ENSMUST00000123014 Gm6938 lincRNA Interval_18798 chr10 90945327 90945670 + 0 NA intron (ENSMUSG00000058589.14, intron 23 of 25) protein_coding-intron (ENSMUSG00000058589.14, intron 9 of 11) -60243 ENSMUSG00000087966.1 ENSMUSG00000087966 ENSMUST00000157341 Gm25390 snRNA Interval_110453 chr3 158355595 158355797 + 0 NA intron (ENSMUSG00000028176.13, intron 2 of 24) protein_coding-intron (ENSMUSG00000028176.13, intron 3 of 27) 61282 ENSMUSG00000106448.1 ENSMUSG00000106448 ENSMUST00000196431 Gm43486 TEC Interval_109919 chr3 151566879 151567088 + 0 NA Intergenic Intergenic -41360 ENSMUSG00000065138.1 ENSMUSG00000065138 ENSMUST00000083204 Gm24458 snRNA Interval_159334 chr8 93697711 93697980 + 0 NA Intergenic Intergenic -9887 ENSMUSG00000110559.1 ENSMUSG00000110559 ENSMUST00000212304 Gm26843 lincRNA Interval_22437 chr11 10094506 10095025 + 0 NA Intergenic Intergenic -144572 ENSMUSG00000082312.1 ENSMUSG00000082312 ENSMUST00000117538 Gm11996 processed_pseudogene Interval_24844 chr11 40248451 40249687 + 0 NA intron (ENSMUSG00000085301.1, intron 5 of 7) lincRNA-intron (ENSMUSG00000085301.1, intron 5 of 7) 174285 ENSMUSG00000082295.1 ENSMUSG00000082295 ENSMUST00000121775 Gm12133 processed_pseudogene Interval_67210 chr16 44474978 44476172 + 0 NA intron (ENSMUSG00000071550.14, intron 31 of 33) protein_coding-intron (ENSMUSG00000071550.14, intron 32 of 34) 80779 ENSMUSG00000071550.14 ENSMUSG00000071550 ENSMUST00000127303 Cfap44 protein_coding Interval_162755 chr9 8536666 8538386 + 0 NA Intergenic Intergenic -6670 ENSMUSG00000031997.9 ENSMUSG00000031997 ENSMUST00000214596 Trpc6 protein_coding Interval_24441 chr11 33281204 33281963 + 0 NA intron (ENSMUSG00000040594.19, intron 22 of 27) protein_coding-intron (ENSMUSG00000040594.19, intron 22 of 27) -4846 ENSMUSG00000098456.1 ENSMUSG00000098456 ENSMUST00000183831 Gm12117 protein_coding Interval_134670 chr6 30250557 30251267 + 0 NA intron (ENSMUSG00000039159.16, intron 3 of 6) protein_coding-intron (ENSMUSG00000039159.16, intron 3 of 4) 53616 ENSMUSG00000039159.16 ENSMUSG00000039159 ENSMUST00000148744 Ube2h protein_coding Interval_134004 chr6 17667307 17667528 + 0 NA TTS (ENSMUSG00000015733.13) protein_coding-TTS (ENSMUSG00000015733.13) -26009 ENSMUSG00000098767.1 ENSMUSG00000098767 ENSMUST00000184623 Gm27755 misc_RNA Interval_154928 chr8 25117467 25119820 + 0 NA Intergenic Intergenic -13975 ENSMUSG00000109684.1 ENSMUSG00000109684 ENSMUST00000211447 Gm45745 TEC Interval_132251 chr5 143621930 143623139 + 0 NA promoter-TSS (ENSMUSG00000018001.18) protein_coding-promoter-TSS (ENSMUSG00000018001.18) 33 ENSMUSG00000018001.18 ENSMUSG00000018001 ENSMUST00000110727 Cyth3 protein_coding Interval_129737 chr5 122049124 122050937 + 0 NA promoter-TSS (ENSMUSG00000042589.18) protein_coding-promoter-TSS (ENSMUSG00000042589.18) 1648 ENSMUSG00000087386.1 ENSMUSG00000087386 ENSMUST00000135544 Gm15637 antisense Interval_21881 chr11 4946737 4948226 + 0 NA exon (ENSMUSG00000020396.8, exon 1 of 4) protein_coding-exon (ENSMUSG00000020396.8, exon 1 of 4) 583 ENSMUSG00000020396.8 ENSMUSG00000020396 ENSMUST00000093369 Nefh protein_coding Interval_25889 chr11 52350518 52351400 + 0 NA Intergenic Intergenic -23141 ENSMUSG00000020402.11 ENSMUSG00000020402 ENSMUST00000153339 Vdac1 protein_coding Interval_174275 chrX 143030237 143031156 + 0 NA Intergenic Intergenic -63968 ENSMUSG00000042225.3 ENSMUSG00000042225 ENSMUST00000041317 Ammecr1 protein_coding Interval_123393 chr5 32153175 32154126 + 0 NA TTS (ENSMUSG00000029135.10) protein_coding-TTS (ENSMUSG00000029135.10) 7129 ENSMUSG00000029135.10 ENSMUSG00000029135 ENSMUST00000202169 Fosl2 protein_coding Interval_11537 chr1 182527396 182528895 + 0 NA Intergenic Intergenic -18105 ENSMUSG00000103878.1 ENSMUSG00000103878 ENSMUST00000192906 Gm8197 transcribed_processed_pseudogene Interval_143572 chr7 12903187 12904258 + 0 NA exon (ENSMUSG00000054715.11, exon 2 of 3) protein_coding-exon (ENSMUSG00000054715.11, exon 2 of 3) 5881 ENSMUSG00000054715.11 ENSMUSG00000054715 ENSMUST00000119989 Zscan22 protein_coding Interval_145670 chr7 37174971 37176216 + 0 NA Intergenic Intergenic 35052 ENSMUSG00000100905.1 ENSMUSG00000100905 ENSMUST00000189179 Gm28075 lincRNA Interval_114389 chr4 74687520 74687784 + 0 NA TTS (ENSMUSG00000083659.1) processed_pseudogene-TTS (ENSMUSG00000083659.1) 1672 ENSMUSG00000083659.1 ENSMUSG00000083659 ENSMUST00000121086 Gm11258 processed_pseudogene Interval_69583 chr16 94432063 94433363 + 0 NA intron (ENSMUSG00000040785.19, intron 27 of 44) protein_coding-intron (ENSMUSG00000040785.19, intron 28 of 45) 3640 ENSMUSG00000075829.1 ENSMUSG00000075829 ENSMUST00000101881 Gm23692 snRNA Interval_121374 chr4 155324298 155324927 + 0 NA intron (ENSMUSG00000029053.16, intron 4 of 17) protein_coding-intron (ENSMUSG00000029053.16, intron 4 of 17) -19071 ENSMUSG00000098729.1 ENSMUSG00000098729 ENSMUST00000184626 Gm27200 antisense Interval_1493 chr1 24134813 24135141 + 0 NA Intergenic Intergenic 9702 ENSMUSG00000097670.1 ENSMUSG00000097670 ENSMUST00000180661 Gm26607 processed_pseudogene Interval_29463 chr11 84141530 84142509 + 0 NA intron (ENSMUSG00000020532.18, intron 1 of 3) protein_coding-intron (ENSMUSG00000020532.18, intron 1 of 3) 12319 ENSMUSG00000020532.18 ENSMUSG00000020532 ENSMUST00000183887 Acaca protein_coding Interval_1697 chr1 31378862 31379245 + 0 NA Intergenic Intergenic 92108 ENSMUSG00000094215.2 ENSMUSG00000094215 ENSMUST00000178167 Gm6489 processed_pseudogene Interval_118816 chr4 133857657 133858170 + 0 NA intron (ENSMUSG00000003644.17, intron 16 of 20) protein_coding-intron (ENSMUSG00000003644.17, intron 17 of 21) -14569 ENSMUSG00000085009.1 ENSMUSG00000085009 ENSMUST00000134799 Gm12977 antisense Interval_123472 chr5 32742154 32742366 + 0 NA promoter-TSS (ENSMUSG00000023452.19) protein_coding-promoter-TSS (ENSMUSG00000023452.19) -1406 ENSMUSG00000023452.19 ENSMUSG00000023452 ENSMUST00000145759 Pisd protein_coding Interval_154840 chr8 24204093 24205807 + 0 NA Intergenic Intergenic -15560 ENSMUSG00000109419.1 ENSMUSG00000109419 ENSMUST00000207606 Gm45163 lincRNA Interval_45860 chr13 58598717 58599212 + 0 NA intron (ENSMUSG00000021553.14, intron 1 of 3) protein_coding-intron (ENSMUSG00000021553.14, intron 1 of 17) 11913 ENSMUSG00000021553.14 ENSMUSG00000021553 ENSMUST00000151675 Slc28a3 protein_coding Interval_15908 chr10 59139708 59139988 + 0 NA TTS (ENSMUSG00000037990.18) protein_coding-TTS (ENSMUSG00000037990.18) -55851 ENSMUSG00000088744.1 ENSMUSG00000088744 ENSMUST00000158119 Gm23223 snoRNA Interval_104418 chr3 65476925 65477898 + 0 NA Intergenic Intergenic 17624 ENSMUSG00000103513.1 ENSMUSG00000103513 ENSMUST00000193896 Gm34780 TEC Interval_81631 chr18 62555281 62555814 + 0 NA intron (ENSMUSG00000044176.12, intron 1 of 8) protein_coding-intron (ENSMUSG00000044176.12, intron 1 of 8) 23605 ENSMUSG00000110576.2 ENSMUSG00000110576 ENSMUST00000212026 Gm36368 protein_coding Interval_82606 chr18 75401788 75402268 + 0 NA Intergenic Intergenic 33038 ENSMUSG00000025880.11 ENSMUSG00000025880 ENSMUST00000172718 Smad7 protein_coding Interval_156629 chr8 55758907 55759099 + 0 NA Intergenic Intergenic -18196 ENSMUSG00000109943.1 ENSMUSG00000109943 ENSMUST00000209227 Gm45610 processed_pseudogene Interval_72115 chr17 28129403 28132495 + 0 NA Intergenic Intergenic 9157 ENSMUSG00000117189.1 ENSMUSG00000117189 ENSMUST00000232878 Gm49897 TEC Interval_70592 chr17 12182324 12183626 + 0 NA intron (ENSMUSG00000023827.8, intron 1 of 6) protein_coding-intron (ENSMUSG00000023827.8, intron 2 of 8) -6946 ENSMUSG00000063911.4 ENSMUSG00000063911 ENSMUST00000074412 Tdgf1-ps2 processed_pseudogene Interval_136368 chr6 53844794 53845334 + 0 NA intron (ENSMUSG00000108175.1, intron 1 of 4) antisense-intron (ENSMUSG00000108175.1, intron 1 of 4) -24234 ENSMUSG00000043496.7 ENSMUSG00000043496 ENSMUST00000127748 Tril protein_coding Interval_173937 chrX 113573615 113574154 + 0 NA intron (ENSMUSG00000025592.17, intron 3 of 7) protein_coding-intron (ENSMUSG00000025592.17, intron 3 of 12) -241659 ENSMUSG00000080428.1 ENSMUSG00000080428 ENSMUST00000116778 Gm24831 snRNA Interval_7698 chr1 133125616 133126204 + 0 NA Intergenic Intergenic -5434 ENSMUSG00000046062.5 ENSMUSG00000046062 ENSMUST00000122956 Ppp1r15b protein_coding Interval_85676 chr19 29607435 29608468 + 0 NA TTS (ENSMUSG00000046324.12) protein_coding-TTS (ENSMUSG00000046324.12) 38076 ENSMUSG00000046324.12 ENSMUSG00000046324 ENSMUST00000160907 Ermp1 protein_coding Interval_30830 chr11 96755250 96755556 + 0 NA intron (ENSMUSG00000057058.16, intron 12 of 12) protein_coding-intron (ENSMUSG00000057058.16, intron 11 of 11) -11399 ENSMUSG00000085242.1 ENSMUSG00000085242 ENSMUST00000124865 Gm11537 antisense Interval_40827 chr12 108701833 108702706 + 0 NA promoter-TSS (ENSMUSG00000021263.11) protein_coding-promoter-TSS (ENSMUSG00000021263.11) 6783 ENSMUSG00000113396.1 ENSMUSG00000113396 ENSMUST00000221885 Gm33467 antisense Interval_119137 chr4 135798115 135798494 + 0 NA exon (ENSMUSG00000037139.15, exon 25 of 37) protein_coding-exon (ENSMUSG00000037139.15, exon 25 of 37) 114 ENSMUSG00000037139.15 ENSMUSG00000037139 ENSMUST00000142177 Myom3 protein_coding Interval_82473 chr18 74310250 74311002 + 0 NA intron (ENSMUSG00000035394.11, intron 7 of 8) protein_coding-intron (ENSMUSG00000035394.11, intron 6 of 7) -6695 ENSMUSG00000095419.1 ENSMUSG00000095419 ENSMUST00000122178 Gm14328 processed_pseudogene Interval_120506 chr4 149054582 149054937 + 0 NA intron (ENSMUSG00000028975.16, intron 2 of 3) protein_coding-intron (ENSMUSG00000028975.16, intron 2 of 8) -41624 ENSMUSG00000081086.1 ENSMUSG00000081086 ENSMUST00000118516 Gm9506 processed_pseudogene Interval_58833 chr15 38434069 38435055 + 0 NA Intergenic Intergenic 20572 ENSMUSG00000115009.1 ENSMUSG00000115009 ENSMUST00000228650 G930009F23Rik lincRNA Interval_81570 chr18 61752943 61753511 + 0 NA intron (ENSMUSG00000033032.15, intron 5 of 17) protein_coding-intron (ENSMUSG00000033032.15, intron 5 of 18) 26794 ENSMUSG00000098702.1 ENSMUSG00000098702 ENSMUST00000184530 1500015A07Rik antisense Interval_79482 chr18 32253601 32254557 + 0 NA intron (ENSMUSG00000024382.13, intron 7 of 13) protein_coding-intron (ENSMUSG00000024382.13, intron 8 of 14) 13725 ENSMUSG00000024382.13 ENSMUSG00000024382 ENSMUST00000129023 Ercc3 protein_coding Interval_128881 chr5 115844551 115845673 + 0 NA promoter-TSS (ENSMUSG00000029516.19) protein_coding-promoter-TSS (ENSMUSG00000029516.19) -25032 ENSMUSG00000106869.1 ENSMUSG00000106869 ENSMUST00000201056 Gm42473 TEC Interval_49299 chr13 110428724 110429163 + 0 NA Intergenic Intergenic 32931 ENSMUSG00000021701.8 ENSMUSG00000021701 ENSMUST00000225156 Plk2 protein_coding Interval_172279 chrX 12284803 12289276 + 0 NA Intergenic Intergenic 67957 ENSMUSG00000087591.7 ENSMUSG00000087591 ENSMUST00000137281 Gm14635 lincRNA Interval_52831 chr14 50937713 50939388 + 0 NA intron (ENSMUSG00000115338.2, intron 2 of 5) protein_coding-intron (ENSMUSG00000115338.2, intron 2 of 5) -5967 ENSMUSG00000021871.19 ENSMUSG00000021871 ENSMUST00000227052 Gm49342 protein_coding Interval_38358 chr12 77774818 77776152 + 0 NA Intergenic Intergenic 39324 ENSMUSG00000077707.1 ENSMUSG00000077707 ENSMUST00000104519 Gm24070 snoRNA Interval_72679 chr17 31511119 31512842 + 0 NA promoter-TSS (ENSMUSG00000118049.1) antisense-promoter-TSS (ENSMUSG00000118049.1) -24 ENSMUSG00000118049.1 ENSMUSG00000118049 ENSMUST00000235946 Gm50103 antisense Interval_67306 chr16 45792925 45793877 + 0 NA intron (ENSMUSG00000033149.17, intron 6 of 15) protein_coding-intron (ENSMUSG00000033149.17, intron 5 of 17) -21118 ENSMUSG00000033149.17 ENSMUSG00000033149 ENSMUST00000136317 Phldb2 protein_coding Interval_127372 chr5 103533055 103533247 + 0 NA promoter-TSS (ENSMUSG00000104580.1) antisense-promoter-TSS (ENSMUSG00000104580.1) -130 ENSMUSG00000104580.1 ENSMUSG00000104580 ENSMUST00000197715 Gm42620 antisense Interval_164418 chr9 36885375 36887436 + 0 NA Intergenic Intergenic 53597 ENSMUSG00000032118.16 ENSMUSG00000032118 ENSMUST00000161978 Fez1 protein_coding Interval_31231 chr11 99025996 99026324 + 0 NA Intergenic Intergenic -9008 ENSMUSG00000065262.1 ENSMUSG00000065262 ENSMUST00000083328 Gm23451 snoRNA Interval_124273 chr5 43289856 43290225 + 0 NA TTS (ENSMUSG00000039782.15) protein_coding-TTS (ENSMUSG00000039782.15) 24883 ENSMUSG00000105326.1 ENSMUSG00000105326 ENSMUST00000199734 6030400A10Rik TEC Interval_88486 chr2 5564967 5565187 + 0 NA TTS (ENSMUSG00000039145.16) protein_coding-TTS (ENSMUSG00000039145.16) -38494 ENSMUSG00000082013.1 ENSMUSG00000082013 ENSMUST00000117145 Gm13216 processed_pseudogene Interval_156082 chr8 43722471 43722990 + 0 NA exon (ENSMUSG00000110224.1, exon 1 of 1) processed_pseudogene-exon (ENSMUSG00000110224.1, exon 1 of 1) 1334 ENSMUSG00000110224.1 ENSMUSG00000110224 ENSMUST00000211736 Gm6011 processed_pseudogene Interval_140630 chr6 120199443 120200557 + 0 NA intron (ENSMUSG00000041377.12, intron 3 of 3) protein_coding-intron (ENSMUSG00000041377.12, intron 3 of 3) -56250 ENSMUSG00000095086.1 ENSMUSG00000095086 ENSMUST00000180263 Gm25327 snRNA Interval_13434 chr10 18200596 18200895 + 0 NA intron (ENSMUSG00000071392.6, intron 1 of 20) protein_coding-intron (ENSMUSG00000071392.6, intron 2 of 20) 15590 ENSMUSG00000059554.12 ENSMUSG00000059554 ENSMUST00000052648 Ccdc28a protein_coding Interval_15435 chr10 46473929 46474316 + 0 NA Intergenic Intergenic 96513 ENSMUSG00000094681.1 ENSMUSG00000094681 ENSMUST00000180247 Gm25740 snRNA Interval_45876 chr13 58675451 58676201 + 0 NA Intergenic Intergenic -6987 ENSMUSG00000114380.1 ENSMUSG00000114380 ENSMUST00000225253 Gm47942 processed_pseudogene Interval_15648 chr10 52877185 52878289 + 0 NA intron (ENSMUSG00000038602.7, intron 1 of 7) protein_coding-intron (ENSMUSG00000038602.7, intron 1 of 7) -27901 ENSMUSG00000088322.1 ENSMUSG00000088322 ENSMUST00000157697 Gm25664 snRNA Interval_162367 chr8 127451134 127451817 + 0 NA intron (ENSMUSG00000025812.18, intron 1 of 2) protein_coding-intron (ENSMUSG00000025812.18, intron 19 of 23) -109960 ENSMUSG00000090074.1 ENSMUSG00000090074 ENSMUST00000161478 Gm6921 processed_pseudogene Interval_23809 chr11 26449832 26450299 + 0 NA intron (ENSMUSG00000004018.9, intron 3 of 3) protein_coding-intron (ENSMUSG00000004018.9, intron 7 of 13) 40858 ENSMUSG00000081811.1 ENSMUSG00000081811 ENSMUST00000118404 Gm12713 processed_pseudogene Interval_38123 chr12 75796411 75797357 + 0 NA Intergenic Intergenic -21466 ENSMUSG00000063450.14 ENSMUSG00000063450 ENSMUST00000151286 Syne2 protein_coding Interval_11318 chr1 180933425 180935430 + 0 NA promoter-TSS (ENSMUSG00000038793.8) protein_coding-promoter-TSS (ENSMUSG00000038793.8) -2444 ENSMUSG00000038793.8 ENSMUSG00000038793 ENSMUST00000132087 Lefty1 protein_coding Interval_103871 chr3 53969952 53971012 + 0 NA Intergenic Intergenic 45647 ENSMUSG00000106577.1 ENSMUSG00000106577 ENSMUST00000198762 Gm31026 lincRNA Interval_41276 chr12 112339820 112340021 + 0 NA Intergenic Intergenic 10147 ENSMUSG00000103080.1 ENSMUSG00000103080 ENSMUST00000194990 Gm38123 TEC Interval_64056 chr16 6791366 6792262 + 0 NA intron (ENSMUSG00000008658.16, intron 3 of 11) protein_coding-intron (ENSMUSG00000008658.16, intron 2 of 14) -401933 ENSMUSG00000008658.16 ENSMUSG00000008658 ENSMUST00000231031 Rbfox1 protein_coding Interval_66853 chr16 38131971 38132350 + 0 NA intron (ENSMUSG00000022812.14, intron 1 of 11) protein_coding-intron (ENSMUSG00000022812.14, intron 1 of 10) -25848 ENSMUSG00000095395.2 ENSMUSG00000095395 ENSMUST00000179548 Gm25617 snoRNA Interval_28300 chr11 75016418 75016640 + 0 NA intron (ENSMUSG00000038290.15, intron 1 of 4) protein_coding-intron (ENSMUSG00000038290.15, intron 10 of 18) 22819 ENSMUSG00000085765.1 ENSMUSG00000085765 ENSMUST00000155508 Gm12333 antisense Interval_79679 chr18 34465342 34465626 + 0 NA promoter-TSS (ENSMUSG00000036501.7) protein_coding-promoter-TSS (ENSMUSG00000036501.7) 32419 ENSMUSG00000036501.7 ENSMUSG00000036501 ENSMUST00000236598 Fam13b protein_coding Interval_147524 chr7 68019998 68020203 + 0 NA intron (ENSMUSG00000005533.10, intron 2 of 20) protein_coding-intron (ENSMUSG00000005533.10, intron 2 of 20) -133515 ENSMUSG00000109152.1 ENSMUSG00000109152 ENSMUST00000208544 Gm44666 processed_pseudogene Interval_87210 chr19 46915271 46916269 + 0 NA intron (ENSMUSG00000025041.17, intron 3 of 5) protein_coding-intron (ENSMUSG00000025041.17, intron 3 of 18) 34275 ENSMUSG00000117814.1 ENSMUSG00000117814 ENSMUST00000236822 Gm50431 lincRNA Interval_18313 chr10 84829898 84830361 + 0 NA intron (ENSMUSG00000020037.15, intron 4 of 17) protein_coding-intron (ENSMUSG00000020037.15, intron 4 of 17) -18946 ENSMUSG00000089451.1 ENSMUSG00000089451 ENSMUST00000158826 Gm24226 snRNA Interval_46213 chr13 62561680 62561956 + 0 NA intron (ENSMUSG00000074865.11, intron 1 of 1) protein_coding-intron (ENSMUSG00000074865.11, intron 1 of 1) -3223 ENSMUSG00000074865.11 ENSMUSG00000074865 ENSMUST00000221279 Zfp934 protein_coding Interval_106291 chr3 95172189 95174687 + 0 NA TTS (ENSMUSG00000038777.19) protein_coding-TTS (ENSMUSG00000038777.19) 12944 ENSMUSG00000038777.19 ENSMUSG00000038777 ENSMUST00000126597 Sema6c protein_coding Interval_105348 chr3 85274809 85275689 + 0 NA intron (ENSMUSG00000102805.5, intron 3 of 9) protein_coding-intron (ENSMUSG00000102805.5, intron 3 of 9) -42270 ENSMUSG00000099995.1 ENSMUSG00000099995 ENSMUST00000189046 1700036G14Rik antisense Interval_90489 chr2 30769409 30769628 + 0 NA Intergenic Intergenic 34126 ENSMUSG00000044320.14 ENSMUSG00000044320 ENSMUST00000140168 1700001O22Rik protein_coding Interval_48143 chr13 96647513 96648017 + 0 NA Intergenic Intergenic 18710 ENSMUSG00000021669.15 ENSMUSG00000021669 ENSMUST00000221394 Col4a3bp protein_coding Interval_143770 chr7 16210833 16211104 + 0 NA intron (ENSMUSG00000006019.15, intron 6 of 16) protein_coding-intron (ENSMUSG00000006019.15, intron 6 of 16) 11064 ENSMUSG00000006019.15 ENSMUSG00000006019 ENSMUST00000133518 Dhx34 protein_coding Interval_81287 chr18 57400141 57401199 + 0 NA intron (ENSMUSG00000086607.7, intron 3 of 3) antisense-intron (ENSMUSG00000086607.7, intron 3 of 3) -4745 ENSMUSG00000117864.1 ENSMUSG00000117864 ENSMUST00000238028 Gm19500 processed_transcript Interval_31941 chr11 103976553 103976789 + 0 NA intron (ENSMUSG00000062421.13, intron 1 of 1) protein_coding-intron (ENSMUSG00000062421.13, intron 3 of 4) -2918 ENSMUSG00000062421.13 ENSMUSG00000062421 ENSMUST00000154089 Arf2 protein_coding Interval_31325 chr11 99939727 99940418 + 0 NA Intergenic Intergenic 3781 ENSMUSG00000051481.5 ENSMUSG00000051481 ENSMUST00000058761 Krtap31-2 protein_coding Interval_131996 chr5 142010417 142010956 + 0 NA intron (ENSMUSG00000039683.16, intron 17 of 44) protein_coding-intron (ENSMUSG00000039683.16, intron 13 of 40) -272420 ENSMUSG00000097947.1 ENSMUSG00000097947 ENSMUST00000182990 Gm26970 processed_pseudogene Interval_65451 chr16 22402602 22404401 + 0 NA intron (ENSMUSG00000013089.15, intron 3 of 3) protein_coding-intron (ENSMUSG00000013089.15, intron 7 of 12) -1672 ENSMUSG00000013089.15 ENSMUSG00000013089 ENSMUST00000170393 Etv5 protein_coding Interval_11133 chr1 179563558 179564138 + 0 NA intron (ENSMUSG00000038949.8, intron 1 of 3) protein_coding-intron (ENSMUSG00000038949.8, intron 1 of 10) 17339 ENSMUSG00000038949.8 ENSMUSG00000038949 ENSMUST00000143270 Cnst protein_coding Interval_173866 chrX 106185802 106188005 + 0 NA promoter-TSS (ENSMUSG00000062070.12) protein_coding-promoter-TSS (ENSMUSG00000062070.12) -260 ENSMUSG00000062070.12 ENSMUSG00000062070 ENSMUST00000133559 Pgk1 protein_coding Interval_139480 chr6 100438443 100439308 + 0 NA Intergenic Intergenic 55939 ENSMUSG00000087929.1 ENSMUSG00000087929 ENSMUST00000157304 Gm23234 snoRNA Interval_69578 chr16 94378154 94378567 + 0 NA intron (ENSMUSG00000040785.19, intron 1 of 4) protein_coding-intron (ENSMUSG00000040785.19, intron 1 of 45) -4548 ENSMUSG00000040785.19 ENSMUSG00000040785 ENSMUST00000129536 Ttc3 protein_coding Interval_41705 chr12 117942059 117942591 + 0 NA intron (ENSMUSG00000018581.15, intron 33 of 51) protein_coding-intron (ENSMUSG00000018581.15, intron 65 of 81) 98437 ENSMUSG00000021175.15 ENSMUSG00000021175 ENSMUST00000177339 Cdca7l protein_coding Interval_153981 chr8 11612101 11612340 + 0 NA exon (ENSMUSG00000031508.14, exon 6 of 6) protein_coding-exon (ENSMUSG00000031508.14, exon 6 of 6) 12406 ENSMUSG00000031508.14 ENSMUSG00000031508 ENSMUST00000210876 Ankrd10 protein_coding Interval_70893 chr17 15691048 15692381 + 0 NA Intergenic Intergenic -46821 ENSMUSG00000023852.14 ENSMUSG00000023852 ENSMUST00000173040 Chd1 protein_coding Interval_12940 chr10 8370064 8370466 + 0 NA intron (ENSMUSG00000047712.8, intron 2 of 7) protein_coding-intron (ENSMUSG00000047712.8, intron 2 of 7) -68023 ENSMUSG00000047712.8 ENSMUSG00000047712 ENSMUST00000061601 Ust protein_coding Interval_113059 chr4 47276377 47276563 + 0 NA intron (ENSMUSG00000028339.17, intron 14 of 39) protein_coding-intron (ENSMUSG00000028339.17, intron 14 of 38) 17935 ENSMUSG00000028339.17 ENSMUSG00000028339 ENSMUST00000107730 Col15a1 protein_coding Interval_38568 chr12 80168179 80169103 + 0 NA intron (ENSMUSG00000015143.15, intron 3 of 3) protein_coding-intron (ENSMUSG00000015143.15, intron 20 of 20) 22787 ENSMUSG00000112830.1 ENSMUSG00000112830 ENSMUST00000220316 Gm47765 processed_transcript Interval_62312 chr15 89765176 89766303 + 0 NA Intergenic Intergenic -29222 ENSMUSG00000116149.1 ENSMUSG00000116149 ENSMUST00000229546 Gm18476 processed_pseudogene Interval_26606 chr11 59175971 59177609 + 0 NA exon (ENSMUSG00000043448.13, exon 2 of 2) protein_coding-exon (ENSMUSG00000043448.13, exon 2 of 2) 6036 ENSMUSG00000043448.13 ENSMUSG00000043448 ENSMUST00000108790 Gjc2 protein_coding Interval_58827 chr15 38351575 38352453 + 0 NA Intergenic Intergenic 39721 ENSMUSG00000115456.1 ENSMUSG00000115456 ENSMUST00000227097 Gm35248 lincRNA Interval_35907 chr12 31831236 31831677 + 0 NA intron (ENSMUSG00000035933.5, intron 11 of 22) protein_coding-intron (ENSMUSG00000035933.5, intron 11 of 22) 18170 ENSMUSG00000111987.1 ENSMUSG00000111987 ENSMUST00000220137 Gm48809 antisense Interval_112235 chr4 37342975 37343520 + 0 NA Intergenic Intergenic 45342 ENSMUSG00000088718.1 ENSMUSG00000088718 ENSMUST00000158093 Gm22732 snoRNA Interval_127820 chr5 108029819 108031290 + 0 NA Intergenic Intergenic 25362 ENSMUSG00000096920.1 ENSMUSG00000096920 ENSMUST00000180714 Rps19-ps8 processed_pseudogene Interval_66660 chr16 35920210 35921141 + 0 NA exon (ENSMUSG00000062279.6, exon 1 of 1) processed_pseudogene-exon (ENSMUSG00000062279.6, exon 1 of 1) 211 ENSMUSG00000062279.6 ENSMUSG00000062279 ENSMUST00000078393 Gm10237 processed_pseudogene Interval_6368 chr1 106411863 106412105 + 0 NA Intergenic Intergenic -9997 ENSMUSG00000100247.1 ENSMUSG00000100247 ENSMUST00000187918 A530053M12Rik lincRNA Interval_114354 chr4 74240184 74240449 + 0 NA Intergenic Intergenic 11398 ENSMUSG00000085482.1 ENSMUSG00000085482 ENSMUST00000126646 A230083N12Rik antisense Interval_9551 chr1 159324231 159324581 + 0 NA exon (ENSMUSG00000040782.12, exon 1 of 1) protein_coding-exon (ENSMUSG00000040782.12, exon 1 of 1) 13413 ENSMUSG00000103186.1 ENSMUSG00000103186 ENSMUST00000193887 Gm37088 TEC Interval_89369 chr2 19966132 19967694 + 0 NA exon (ENSMUSG00000083777.1, exon 1 of 1) processed_pseudogene-exon (ENSMUSG00000083777.1, exon 1 of 1) 484 ENSMUSG00000083777.1 ENSMUSG00000083777 ENSMUST00000119977 Gm13361 processed_pseudogene Interval_166321 chr9 58311218 58313344 + 0 NA exon (ENSMUSG00000032334.10, exon 1 of 7) protein_coding-exon (ENSMUSG00000032334.10, exon 1 of 7) 905 ENSMUSG00000032334.10 ENSMUSG00000032334 ENSMUST00000061799 Loxl1 protein_coding Interval_139462 chr6 100335460 100337210 + 0 NA Intergenic Intergenic -49587 ENSMUSG00000072872.3 ENSMUSG00000072872 ENSMUST00000205164 Rybp protein_coding Interval_149108 chr7 93468958 93469125 + 0 NA Intergenic Intergenic -54019 ENSMUSG00000109195.1 ENSMUSG00000109195 ENSMUST00000207537 Gm45038 processed_pseudogene Interval_10200 chr1 167079293 167079717 + 0 NA exon (ENSMUSG00000060568.14, exon 2 of 3) protein_coding-exon (ENSMUSG00000060568.14, exon 2 of 3) -61650 ENSMUSG00000102870.1 ENSMUSG00000102870 ENSMUST00000192761 Gm17868 unprocessed_pseudogene Interval_103272 chr3 37715480 37716070 + 0 NA TTS (ENSMUSG00000100755.1) processed_pseudogene-TTS (ENSMUSG00000100755.1) 1035 ENSMUSG00000100755.1 ENSMUSG00000100755 ENSMUST00000116115 Rps23-ps1 processed_pseudogene Interval_3936 chr1 64942459 64942697 + 0 NA intron (ENSMUSG00000051344.13, intron 1 of 8) protein_coding-intron (ENSMUSG00000051344.13, intron 1 of 7) 8176 ENSMUSG00000097264.1 ENSMUSG00000097264 ENSMUST00000181350 Rpl31-ps24 processed_pseudogene Interval_141683 chr6 133338534 133338739 + 0 NA Intergenic Intergenic 28707 ENSMUSG00000107625.1 ENSMUSG00000107625 ENSMUST00000203547 Gm34149 unprocessed_pseudogene Interval_50431 chr14 13022899 13023094 + 0 NA Intergenic Intergenic -7374 ENSMUSG00000114421.1 ENSMUSG00000114421 ENSMUST00000224173 Gm48526 lincRNA Interval_94084 chr2 83723781 83725224 + 0 NA promoter-TSS (ENSMUSG00000027087.11) protein_coding-promoter-TSS (ENSMUSG00000027087.11) 45 ENSMUSG00000027087.11 ENSMUSG00000027087 ENSMUST00000131192 Itgav protein_coding Interval_30584 chr11 95250985 95252197 + 0 NA Intergenic Intergenic -9938 ENSMUSG00000020872.4 ENSMUSG00000020872 ENSMUST00000021242 Tac4 protein_coding Interval_109311 chr3 138837312 138838243 + 0 NA intron (ENSMUSG00000028152.10, intron 1 of 7) protein_coding-intron (ENSMUSG00000028152.10, intron 1 of 7) -8615 ENSMUSG00000086123.3 ENSMUSG00000086123 ENSMUST00000153140 Gm16060 processed_pseudogene Interval_143454 chr7 6913649 6913913 + 0 NA intron (ENSMUSG00000051527.11, intron 4 of 8) protein_coding-intron (ENSMUSG00000051527.11, intron 2 of 7) 13429 ENSMUSG00000109094.1 ENSMUSG00000109094 ENSMUST00000207399 Gm44587 TEC Interval_169238 chr9 95700594 95700994 + 0 NA Intergenic Intergenic 20488 ENSMUSG00000015354.8 ENSMUSG00000015354 ENSMUST00000151210 Pcolce2 protein_coding Interval_38395 chr12 78642012 78642295 + 0 NA intron (ENSMUSG00000047454.12, intron 17 of 22) protein_coding-intron (ENSMUSG00000047454.12, intron 18 of 23) -40494 ENSMUSG00000047454.12 ENSMUSG00000047454 ENSMUST00000219629 Gphn protein_coding Interval_141577 chr6 129558483 129559997 + 0 NA Intergenic Intergenic -6792 ENSMUSG00000108257.1 ENSMUSG00000108257 ENSMUST00000204963 Gm44251 processed_pseudogene Interval_124145 chr5 38654789 38656515 + 0 NA Intergenic Intergenic 29174 ENSMUSG00000046572.10 ENSMUSG00000046572 ENSMUST00000178760 Zfp518b protein_coding Interval_15571 chr10 51638993 51639203 + 0 NA Intergenic Intergenic -7667 ENSMUSG00000019905.8 ENSMUSG00000019905 ENSMUST00000218684 Gprc6a protein_coding Interval_2696 chr1 43500498 43500951 + 0 NA intron (ENSMUSG00000066877.11, intron 1 of 4) protein_coding-intron (ENSMUSG00000066877.11, intron 1 of 4) 12277 ENSMUSG00000103422.1 ENSMUSG00000103422 ENSMUST00000194710 Gm37536 TEC Interval_75260 chr17 65528572 65529043 + 0 NA intron (ENSMUSG00000045036.15, intron 1 of 14) protein_coding-intron (ENSMUSG00000045036.15, intron 2 of 15) -14839 ENSMUSG00000117140.1 ENSMUSG00000117140 ENSMUST00000233254 Gm18138 processed_pseudogene Interval_70638 chr17 12660293 12661255 + 0 NA intron (ENSMUSG00000023829.9, intron 5 of 9) protein_coding-intron (ENSMUSG00000023829.9, intron 6 of 10) 14922 ENSMUSG00000023829.9 ENSMUSG00000023829 ENSMUST00000233601 Slc22a1 protein_coding Interval_41842 chr13 3244022 3244723 + 0 NA Intergenic Intergenic -28905 ENSMUSG00000113271.1 ENSMUSG00000113271 ENSMUST00000222272 Gm40653 lincRNA Interval_55471 chr14 87678371 87678682 + 0 NA Intergenic Intergenic -41056 ENSMUSG00000115608.1 ENSMUSG00000115608 ENSMUST00000228615 Gm48922 processed_pseudogene Interval_141776 chr6 134396222 134396550 + 0 NA promoter-TSS (ENSMUSG00000030200.13) protein_coding-promoter-TSS (ENSMUSG00000030200.13) -2254 ENSMUSG00000030200.13 ENSMUSG00000030200 ENSMUST00000142612 Bcl2l14 protein_coding Interval_83253 chr18 83027371 83027568 + 0 NA exon (ENSMUSG00000118094.1, exon 3 of 3) processed_transcript-intron (ENSMUSG00000118094.1, intron 1 of 6) -6314 ENSMUSG00000117976.1 ENSMUSG00000117976 ENSMUST00000238101 Gm50437 lincRNA Interval_58267 chr15 31510452 31511555 + 0 NA intron (ENSMUSG00000039100.10, intron 1 of 25) protein_coding-intron (ENSMUSG00000039100.10, intron 1 of 25) 10270 ENSMUSG00000115224.1 ENSMUSG00000115224 ENSMUST00000226633 Gm49215 processed_pseudogene Interval_74546 chr17 53212209 53212592 + 0 NA Intergenic Intergenic 15949 ENSMUSG00000117244.1 ENSMUSG00000117244 ENSMUST00000233156 Gm9210 processed_pseudogene Interval_81161 chr18 55190099 55190936 + 0 NA Intergenic Intergenic 10677 ENSMUSG00000088227.1 ENSMUSG00000088227 ENSMUST00000157602 Gm22597 snRNA Interval_30195 chr11 90417560 90418665 + 0 NA Intergenic Intergenic -30139 ENSMUSG00000003949.16 ENSMUSG00000003949 ENSMUST00000145786 Hlf protein_coding Interval_47473 chr13 84981477 84981727 + 0 NA Intergenic Intergenic -7285 ENSMUSG00000114338.1 ENSMUSG00000114338 ENSMUST00000225386 Gm4059 processed_pseudogene Interval_115269 chr4 95075441 95076817 + 0 NA intron (ENSMUSG00000087366.7, intron 1 of 4) antisense-intron (ENSMUSG00000087366.7, intron 2 of 4) 460 ENSMUSG00000087366.7 ENSMUSG00000087366 ENSMUST00000128094 Junos antisense Interval_143708 chr7 15856477 15856979 + 0 NA Intergenic Intergenic -17050 ENSMUSG00000041583.8 ENSMUSG00000041583 ENSMUST00000108513 Obox6 protein_coding Interval_160250 chr8 107454910 107456563 + 0 NA intron (ENSMUSG00000031930.11, intron 3 of 4) protein_coding-intron (ENSMUSG00000031930.11, intron 2 of 23) -11044 ENSMUSG00000110501.1 ENSMUSG00000110501 ENSMUST00000211879 Gm45900 processed_pseudogene Interval_62104 chr15 86681679 86681882 + 0 NA Intergenic Intergenic -22511 ENSMUSG00000116040.1 ENSMUSG00000116040 ENSMUST00000229409 Gm49464 lincRNA Interval_72184 chr17 28472079 28472925 + 0 NA intron (ENSMUSG00000024222.17, intron 1 of 10) protein_coding-intron (ENSMUSG00000024222.17, intron 1 of 10) -11407 ENSMUSG00000117294.1 ENSMUSG00000117294 ENSMUST00000233091 Gm49839 TEC Interval_11731 chr1 184958576 184958986 + 0 NA intron (ENSMUSG00000026620.11, intron 1 of 17) protein_coding-intron (ENSMUSG00000026620.11, intron 1 of 17) 35645 ENSMUSG00000102784.1 ENSMUSG00000102784 ENSMUST00000192968 Gm38251 antisense Interval_1127 chr1 15866247 15866567 + 0 NA intron (ENSMUSG00000032719.4, intron 2 of 4) protein_coding-intron (ENSMUSG00000032719.4, intron 2 of 4) 13076 ENSMUSG00000104379.1 ENSMUSG00000104379 ENSMUST00000194867 Gm37509 TEC Interval_67822 chr16 57458217 57458857 + 0 NA intron (ENSMUSG00000022748.8, intron 1 of 1) protein_coding-intron (ENSMUSG00000022748.8, intron 1 of 1) 105444 ENSMUSG00000043336.14 ENSMUSG00000043336 ENSMUST00000159414 Filip1l protein_coding Interval_156538 chr8 50106109 50106301 + 0 NA Intergenic Intergenic -92821 ENSMUSG00000110375.1 ENSMUSG00000110375 ENSMUST00000209853 Gm45323 lincRNA Interval_24017 chr11 29531842 29532247 + 0 NA intron (ENSMUSG00000020459.14, intron 3 of 8) protein_coding-intron (ENSMUSG00000020459.14, intron 3 of 13) 5597 ENSMUSG00000020459.14 ENSMUSG00000020459 ENSMUST00000129893 Mtif2 protein_coding Interval_15351 chr10 45000807 45001253 + 0 NA Intergenic Intergenic -5080 ENSMUSG00000095168.1 ENSMUSG00000095168 ENSMUST00000095717 Gm4795 processed_pseudogene Interval_60914 chr15 77821444 77822516 + 0 NA intron (ENSMUSG00000022443.17, intron 1 of 2) protein_coding-intron (ENSMUSG00000022443.17, intron 1 of 40) 18776 ENSMUSG00000084497.1 ENSMUSG00000084497 ENSMUST00000122548 Gm22107 snRNA Interval_168036 chr9 75527377 75528508 + 0 NA TTS (ENSMUSG00000058587.9) protein_coding-TTS (ENSMUSG00000058587.9) -7440 ENSMUSG00000111228.1 ENSMUSG00000111228 ENSMUST00000215151 Gm48789 processed_pseudogene Interval_123708 chr5 34642789 34643425 + 0 NA TTS (ENSMUSG00000036693.12) protein_coding-TTS (ENSMUSG00000036693.12) 4134 ENSMUSG00000036693.12 ENSMUSG00000036693 ENSMUST00000152393 Nop14 protein_coding Interval_146428 chr7 45830319 45831183 + 0 NA promoter-TSS (ENSMUSG00000053801.18) protein_coding-promoter-TSS (ENSMUSG00000053801.18) 130 ENSMUSG00000053801.18 ENSMUSG00000053801 ENSMUST00000211265 Grwd1 protein_coding Interval_137611 chr6 75596122 75596826 + 0 NA Intergenic Intergenic -23016 ENSMUSG00000107830.1 ENSMUSG00000107830 ENSMUST00000203062 4933439N06Rik TEC Interval_11799 chr1 185501850 185502607 + 0 NA Intergenic Intergenic 14934 ENSMUSG00000102185.1 ENSMUSG00000102185 ENSMUST00000192616 5033404E19Rik transcribed_processed_pseudogene Interval_51904 chr14 33678463 33678714 + 0 NA Intergenic Intergenic 34093 ENSMUSG00000064446.1 ENSMUSG00000064446 ENSMUST00000082512 Gm26228 snRNA Interval_36985 chr12 55888706 55889061 + 0 NA Intergenic Intergenic 22040 ENSMUSG00000065244.1 ENSMUSG00000065244 ENSMUST00000083310 Gm22296 snRNA Interval_22832 chr11 16452852 16453076 + 0 NA Intergenic Intergenic 13710 ENSMUSG00000083925.1 ENSMUSG00000083925 ENSMUST00000118857 Gm12012 processed_pseudogene Interval_141072 chr6 124808646 124809695 + 0 NA promoter-TSS (ENSMUSG00000038451.13) protein_coding-promoter-TSS (ENSMUSG00000038451.13) 285 ENSMUSG00000038451.13 ENSMUSG00000038451 ENSMUST00000112473 Spsb2 protein_coding Interval_85365 chr19 25228188 25228620 + 0 NA Intergenic Intergenic -62188 ENSMUSG00000065634.1 ENSMUSG00000065634 ENSMUST00000083700 Gm24252 snoRNA Interval_59332 chr15 51739669 51740245 + 0 NA Intergenic Intergenic 96300 ENSMUSG00000022312.11 ENSMUSG00000022312 ENSMUST00000228583 Eif3h protein_coding Interval_56706 chr14 121499476 121500039 + 0 NA intron (ENSMUSG00000025557.10, intron 1 of 22) protein_coding-intron (ENSMUSG00000025557.10, intron 1 of 22) -7288 ENSMUSG00000025557.10 ENSMUSG00000025557 ENSMUST00000227372 Slc15a1 protein_coding Interval_48063 chr13 95671933 95672593 + 0 NA promoter-TSS (ENSMUSG00000021676.10) protein_coding-promoter-TSS (ENSMUSG00000021676.10) -744 ENSMUSG00000021676.10 ENSMUSG00000021676 ENSMUST00000238496 Iqgap2 protein_coding Interval_158531 chr8 84288710 84289526 + 0 NA Intergenic Intergenic 14615 ENSMUSG00000109653.1 ENSMUSG00000109653 ENSMUST00000210948 Gm45608 processed_pseudogene Interval_51686 chr14 31377077 31378116 + 0 NA TTS (ENSMUSG00000021892.14) protein_coding-TTS (ENSMUSG00000021892.14) 12040 ENSMUSG00000021893.14 ENSMUSG00000021893 ENSMUST00000228237 Capn7 protein_coding Interval_25950 chr11 53040788 53041285 + 0 NA intron (ENSMUSG00000036264.9, intron 4 of 15) protein_coding-intron (ENSMUSG00000036264.9, intron 4 of 15) 79020 ENSMUSG00000087668.1 ENSMUSG00000087668 ENSMUST00000137096 Gm11186 antisense Interval_163125 chr9 15464738 15465018 + 0 NA Intergenic Intergenic -24407 ENSMUSG00000111508.1 ENSMUSG00000111508 ENSMUST00000214794 Gm48634 processed_pseudogene Interval_147417 chr7 66702584 66703327 + 0 NA intron (ENSMUSG00000053091.16, intron 2 of 7) protein_coding-intron (ENSMUSG00000053091.16, intron 2 of 7) -5368 ENSMUSG00000053091.16 ENSMUSG00000053091 ENSMUST00000132181 Lins1 protein_coding Interval_67833 chr16 57575954 57577248 + 0 NA intron (ENSMUSG00000022748.8, intron 1 of 1) protein_coding-intron (ENSMUSG00000022748.8, intron 1 of 9) 30263 ENSMUSG00000022748.8 ENSMUSG00000022748 ENSMUST00000232413 Cmss1 protein_coding Interval_77715 chr17 94622384 94622882 + 0 NA Intergenic Intergenic 14448 ENSMUSG00000117476.1 ENSMUSG00000117476 ENSMUST00000234959 Gm9416 processed_pseudogene Interval_132833 chr5 148208588 148208996 + 0 NA intron (ENSMUSG00000029651.16, intron 3 of 3) protein_coding-intron (ENSMUSG00000029651.16, intron 5 of 14) 2564 ENSMUSG00000107033.1 ENSMUSG00000107033 ENSMUST00000200900 Gm43553 TEC Interval_13527 chr10 19176433 19176803 + 0 NA intron (ENSMUSG00000111052.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000111052.1, intron 2 of 3) 9380 ENSMUSG00000111052.1 ENSMUSG00000111052 ENSMUST00000216683 Gm20139 lincRNA Interval_55729 chr14 99348083 99350021 + 0 NA Intergenic Intergenic 3117 ENSMUSG00000084700.1 ENSMUSG00000084700 ENSMUST00000122751 Gm22984 snRNA Interval_169514 chr9 98672114 98672520 + 0 NA Intergenic Intergenic 33519 ENSMUSG00000098939.1 ENSMUSG00000098939 ENSMUST00000185163 Gm27919 misc_RNA Interval_55736 chr14 99405546 99406790 + 0 NA Intergenic Intergenic 18729 ENSMUSG00000115590.1 ENSMUSG00000115590 ENSMUST00000226661 Gm49219 processed_pseudogene Interval_125229 chr5 65536663 65538106 + 0 NA promoter-TSS (ENSMUSG00000037822.12) protein_coding-promoter-TSS (ENSMUSG00000037822.12) -1624 ENSMUSG00000105601.1 ENSMUSG00000105601 ENSMUST00000199296 Gm42725 TEC Interval_158912 chr8 87893219 87893852 + 0 NA intron (ENSMUSG00000045333.15, intron 2 of 3) protein_coding-intron (ENSMUSG00000045333.15, intron 1 of 6) 60327 ENSMUSG00000045333.15 ENSMUSG00000045333 ENSMUST00000173092 Zfp423 protein_coding Interval_88471 chr2 5407388 5407846 + 0 NA intron (ENSMUSG00000039145.16, intron 3 of 10) protein_coding-intron (ENSMUSG00000039145.16, intron 3 of 10) 123967 ENSMUSG00000080820.1 ENSMUSG00000080820 ENSMUST00000117204 Gm13197 processed_pseudogene Interval_1836 chr1 34076874 34077936 + 0 NA intron (ENSMUSG00000026131.20, intron 1 of 5) protein_coding-intron (ENSMUSG00000026131.20, intron 1 of 97) 178 ENSMUSG00000026131.20 ENSMUSG00000026131 ENSMUST00000182507 Dst protein_coding Interval_85826 chr19 32188045 32189863 + 0 NA intron (ENSMUSG00000040451.18, intron 3 of 10) protein_coding-intron (ENSMUSG00000040451.18, intron 5 of 9) 20319 ENSMUSG00000118064.1 ENSMUSG00000118064 ENSMUST00000235377 Gm50210 sense_intronic Interval_22432 chr11 10011085 10011669 + 0 NA Intergenic Intergenic -227960 ENSMUSG00000082312.1 ENSMUSG00000082312 ENSMUST00000117538 Gm11996 processed_pseudogene Interval_106749 chr3 100420407 100421436 + 0 NA Intergenic Intergenic -5518 ENSMUSG00000086923.1 ENSMUSG00000086923 ENSMUST00000152827 4930406D18Rik processed_transcript Interval_49791 chr13 115207218 115207522 + 0 NA Intergenic Intergenic -42550 ENSMUSG00000114872.1 ENSMUSG00000114872 ENSMUST00000225121 Gm18759 processed_pseudogene Interval_57142 chr15 6903026 6903987 + 0 NA Intergenic Intergenic -29249 ENSMUSG00000022146.12 ENSMUSG00000022146 ENSMUST00000177263 Osmr protein_coding Interval_25242 chr11 45829390 45829657 + 0 NA promoter-TSS (ENSMUSG00000076031.1) miRNA-promoter-TSS (ENSMUSG00000076031.1) 204 ENSMUSG00000081251.1 ENSMUSG00000081251 ENSMUST00000121695 Gm12164 processed_pseudogene Interval_154922 chr8 25087591 25088573 + 0 NA intron (ENSMUSG00000031557.16, intron 1 of 4) protein_coding-intron (ENSMUSG00000031557.16, intron 2 of 11) 14072 ENSMUSG00000031557.16 ENSMUSG00000031557 ENSMUST00000125466 Plekha2 protein_coding Interval_169319 chr9 96371649 96371938 + 0 NA Intergenic Intergenic -28212 ENSMUSG00000032412.8 ENSMUSG00000032412 ENSMUST00000187341 Atp1b3 protein_coding Interval_11758 chr1 185247600 185248210 + 0 NA promoter-TSS (ENSMUSG00000103613.1) antisense-promoter-TSS (ENSMUSG00000103613.1) -16 ENSMUSG00000103613.1 ENSMUSG00000103613 ENSMUST00000193245 Gm34882 antisense Interval_70453 chr17 10328329 10328713 + 0 NA intron (ENSMUSG00000099384.6, intron 2 of 2) lincRNA-intron (ENSMUSG00000099384.6, intron 2 of 2) 3919 ENSMUSG00000099384.6 ENSMUSG00000099384 ENSMUST00000188715 1700110C19Rik lincRNA Interval_31592 chr11 101568211 101569084 + 0 NA promoter-TSS (ENSMUSG00000017119.19) protein_coding-promoter-TSS (ENSMUSG00000017119.19) 9128 ENSMUSG00000017119.19 ENSMUSG00000017119 ENSMUST00000141170 Nbr1 protein_coding Interval_67623 chr16 53530516 53530732 + 0 NA Intergenic Intergenic -50940 ENSMUSG00000116977.1 ENSMUSG00000116977 ENSMUST00000232102 Gm49637 processed_pseudogene Interval_56688 chr14 121386163 121386746 + 0 NA promoter-TSS (ENSMUSG00000115666.1) processed_pseudogene-promoter-TSS (ENSMUSG00000115666.1) -498 ENSMUSG00000115666.1 ENSMUSG00000115666 ENSMUST00000228299 Gm49031 processed_pseudogene Interval_93606 chr2 74789640 74791615 + 0 NA Intergenic Intergenic 27647 ENSMUSG00000042448.5 ENSMUSG00000042448 ENSMUST00000047793 Hoxd1 protein_coding Interval_161705 chr8 122181786 122181988 + 0 NA intron (ENSMUSG00000092329.1, intron 1 of 15) protein_coding-intron (ENSMUSG00000092329.1, intron 1 of 15) -76733 ENSMUSG00000043903.4 ENSMUSG00000043903 ENSMUST00000055537 Zfp469 protein_coding Interval_144419 chr7 25035858 25036630 + 0 NA intron (ENSMUSG00000003378.9, intron 13 of 20) protein_coding-intron (ENSMUSG00000003378.9, intron 12 of 19) -30301 ENSMUSG00000040907.15 ENSMUSG00000040907 ENSMUST00000125444 Atp1a3 protein_coding Interval_82926 chr18 79387484 79388419 + 0 NA Intergenic Intergenic 39517 ENSMUSG00000118301.1 ENSMUSG00000118301 ENSMUST00000235488 Gm20593 processed_pseudogene Interval_160331 chr8 108483847 108484220 + 0 NA intron (ENSMUSG00000038872.10, intron 3 of 15) protein_coding-intron (ENSMUSG00000038872.10, intron 3 of 15) 53188 ENSMUSG00000109868.1 ENSMUSG00000109868 ENSMUST00000211262 Gm39244 lincRNA Interval_129746 chr5 122094240 122094692 + 0 NA Intergenic Intergenic -6566 ENSMUSG00000013936.12 ENSMUSG00000013936 ENSMUST00000126006 Myl2 protein_coding Interval_137491 chr6 72736771 72737433 + 0 NA intron (ENSMUSG00000055799.13, intron 2 of 5) protein_coding-intron (ENSMUSG00000055799.13, intron 3 of 11) 14812 ENSMUSG00000104501.1 ENSMUSG00000104501 ENSMUST00000193564 Gm37736 TEC Interval_172903 chrX 53052514 53053066 + 0 NA promoter-TSS (ENSMUSG00000101603.1) lincRNA-promoter-TSS (ENSMUSG00000101603.1) -175 ENSMUSG00000101603.1 ENSMUSG00000101603 ENSMUST00000186426 Gm28730 lincRNA Interval_76927 chr17 85003442 85004571 + 0 NA intron (ENSMUSG00000061130.13, intron 2 of 6) protein_coding-intron (ENSMUSG00000061130.13, intron 3 of 5) 10326 ENSMUSG00000061130.13 ENSMUSG00000061130 ENSMUST00000234851 Ppm1b protein_coding Interval_56479 chr14 119036997 119037955 + 0 NA intron (ENSMUSG00000042104.18, intron 22 of 38) protein_coding-intron (ENSMUSG00000042104.18, intron 9 of 17) -1437 ENSMUSG00000042104.18 ENSMUSG00000042104 ENSMUST00000136924 Uggt2 protein_coding Interval_71582 chr17 24676130 24676495 + 0 NA promoter-TSS (ENSMUSG00000041130.10) protein_coding-promoter-TSS (ENSMUSG00000041130.10) -830 ENSMUSG00000041130.10 ENSMUSG00000041130 ENSMUST00000234988 Zfp598 protein_coding Interval_16157 chr10 61089194 61089915 + 0 NA intron (ENSMUSG00000020098.7, intron 1 of 2) protein_coding-intron (ENSMUSG00000020098.7, intron 1 of 3) 223 ENSMUSG00000020098.7 ENSMUSG00000020098 ENSMUST00000020298 Pcbd1 protein_coding Interval_142897 chr6 146780164 146780404 + 0 NA Intergenic Intergenic -2185 ENSMUSG00000107788.1 ENSMUSG00000107788 ENSMUST00000203844 Gm6266 processed_pseudogene Interval_169097 chr9 92325748 92326828 + 0 NA intron (ENSMUSG00000074139.8, intron 1 of 4) protein_coding-intron (ENSMUSG00000074139.8, intron 1 of 6) 8791 ENSMUSG00000082623.1 ENSMUSG00000082623 ENSMUST00000119461 Gm15493 processed_pseudogene Interval_147086 chr7 62376526 62377627 + 0 NA promoter-TSS (ENSMUSG00000056972.6) protein_coding-promoter-TSS (ENSMUSG00000056972.6) 66 ENSMUSG00000056972.6 ENSMUSG00000056972 ENSMUST00000080403 Magel2 protein_coding Interval_157755 chr8 72756515 72757901 + 0 NA TTS (ENSMUSG00000031622.16) protein_coding-TTS (ENSMUSG00000031622.16) -4676 ENSMUSG00000050147.9 ENSMUSG00000050147 ENSMUST00000212755 F2rl3 protein_coding Interval_58948 chr15 40577827 40578029 + 0 NA Intergenic Intergenic 40607 ENSMUSG00000115069.1 ENSMUSG00000115069 ENSMUST00000226476 Gm7382 processed_pseudogene Interval_72697 chr17 31604731 31606899 + 0 NA TTS (ENSMUSG00000006705.13) protein_coding-TTS (ENSMUSG00000006705.13) 17338 ENSMUSG00000006705.13 ENSMUSG00000006705 ENSMUST00000176513 Pknox1 protein_coding Interval_170707 chr9 110221497 110221789 + 0 NA intron (ENSMUSG00000032481.17, intron 25 of 28) protein_coding-intron (ENSMUSG00000032481.17, intron 25 of 27) -14751 ENSMUSG00000032481.17 ENSMUSG00000032481 ENSMUST00000200426 Smarcc1 protein_coding Interval_97933 chr2 145883439 145885315 + 0 NA intron (ENSMUSG00000001768.16, intron 12 of 12) protein_coding-intron (ENSMUSG00000001768.16, intron 12 of 12) 6091 ENSMUSG00000092758.1 ENSMUSG00000092758 ENSMUST00000175017 Gm25026 miRNA Interval_62214 chr15 88875762 88876876 + 0 NA Intergenic Intergenic 11399 ENSMUSG00000035828.11 ENSMUSG00000035828 ENSMUST00000229969 Pim3 protein_coding Interval_157262 chr8 68783749 68784076 + 0 NA Intergenic Intergenic -14955 ENSMUSG00000081745.1 ENSMUSG00000081745 ENSMUST00000121595 Gm15549 processed_pseudogene Interval_19968 chr10 111570646 111571277 + 0 NA Intergenic Intergenic 23312 ENSMUSG00000097082.1 ENSMUSG00000097082 ENSMUST00000181547 4933440J02Rik lincRNA Interval_19713 chr10 108250705 108251268 + 0 NA exon (ENSMUSG00000019907.10, exon 11 of 26) protein_coding-exon (ENSMUSG00000019907.10, exon 11 of 26) 1392 ENSMUSG00000019907.10 ENSMUSG00000019907 ENSMUST00000219559 Ppp1r12a protein_coding Interval_107129 chr3 103758556 103758887 + 0 NA exon (ENSMUSG00000008730.17, exon 8 of 16) protein_coding-exon (ENSMUSG00000008730.17, exon 8 of 16) -7656 ENSMUSG00000008730.17 ENSMUSG00000008730 ENSMUST00000135634 Hipk1 protein_coding Interval_93072 chr2 69936620 69937221 + 0 NA intron (ENSMUSG00000044308.17, intron 1 of 3) protein_coding-intron (ENSMUSG00000044308.17, intron 7 of 38) 51192 ENSMUSG00000085735.1 ENSMUSG00000085735 ENSMUST00000129114 Mettl5os antisense Interval_141463 chr6 128424203 128425797 + 0 NA promoter-TSS (ENSMUSG00000001518.12) protein_coding-promoter-TSS (ENSMUSG00000001518.12) -82 ENSMUSG00000001518.12 ENSMUSG00000001518 ENSMUST00000204467 Itfg2 protein_coding Interval_123287 chr5 31125851 31126667 + 0 NA intron (ENSMUSG00000062077.14, intron 1 of 8) protein_coding-intron (ENSMUSG00000062077.14, intron 1 of 8) 9525 ENSMUSG00000062077.14 ENSMUSG00000062077 ENSMUST00000202769 Trim54 protein_coding Interval_46838 chr13 72130735 72131059 + 0 NA Intergenic Intergenic -170181 ENSMUSG00000060969.9 ENSMUSG00000060969 ENSMUST00000223460 Irx1 protein_coding Interval_40836 chr12 108763396 108763971 + 0 NA promoter-TSS (ENSMUSG00000112971.1) lincRNA-promoter-TSS (ENSMUSG00000112971.1) -713 ENSMUSG00000112971.1 ENSMUSG00000112971 ENSMUST00000222233 Gm33682 lincRNA Interval_64180 chr16 8880132 8880537 + 0 NA Intergenic Intergenic -7163 ENSMUSG00000087982.1 ENSMUSG00000087982 ENSMUST00000157357 Gm22224 rRNA Interval_22321 chr11 8758868 8759114 + 0 NA Intergenic Intergenic 47857 ENSMUSG00000081539.1 ENSMUSG00000081539 ENSMUST00000121505 Gm11990 processed_pseudogene Interval_29281 chr11 82635048 82635777 + 0 NA exon (ENSMUSG00000069796.3, exon 3 of 3) lincRNA-exon (ENSMUSG00000069796.3, exon 3 of 3) 2059 ENSMUSG00000069796.3 ENSMUSG00000069796 ENSMUST00000125600 Gm11426 lincRNA Interval_173312 chrX 77812039 77812268 + 0 NA Intergenic Intergenic -8873 ENSMUSG00000085973.1 ENSMUSG00000085973 ENSMUST00000148284 Gm14742 lincRNA Interval_158288 chr8 80847993 80849274 + 0 NA intron (ENSMUSG00000031714.9, intron 1 of 10) protein_coding-intron (ENSMUSG00000031714.9, intron 1 of 9) -17749 ENSMUSG00000031714.9 ENSMUSG00000031714 ENSMUST00000211018 Gab1 protein_coding Interval_59376 chr15 51977932 51979366 + 0 NA intron (ENSMUSG00000022314.10, intron 2 of 4) protein_coding-intron (ENSMUSG00000022314.10, intron 2 of 13) 12861 ENSMUSG00000022314.10 ENSMUSG00000022314 ENSMUST00000226529 Rad21 protein_coding Interval_153357 chr7 143888151 143888831 + 0 NA intron (ENSMUSG00000031085.16, intron 7 of 10) protein_coding-intron (ENSMUSG00000031085.16, intron 7 of 10) 21620 ENSMUSG00000031085.16 ENSMUSG00000031085 ENSMUST00000207388 Acte1 protein_coding Interval_165097 chr9 44555587 44555805 + 0 NA intron (ENSMUSG00000047880.15, intron 1 of 1) protein_coding-intron (ENSMUSG00000047880.15, intron 1 of 2) -23931 ENSMUSG00000111378.1 ENSMUSG00000111378 ENSMUST00000215946 Gm47230 lincRNA Interval_88983 chr2 13979251 13979445 + 0 NA intron (ENSMUSG00000063275.15, intron 6 of 7) protein_coding-intron (ENSMUSG00000063275.15, intron 6 of 7) 40701 ENSMUSG00000102553.1 ENSMUSG00000102553 ENSMUST00000191894 D930036K23Rik TEC Interval_59986 chr15 62958169 62959735 + 0 NA Intergenic Intergenic -21696 ENSMUSG00000106988.1 ENSMUSG00000106988 ENSMUST00000201023 Tsg101-ps processed_pseudogene Interval_137124 chr6 67786983 67788041 + 0 NA Intergenic Intergenic -3534 ENSMUSG00000096461.5 ENSMUSG00000096461 ENSMUST00000103307 Igkv14-130 IG_V_gene Interval_118916 chr4 134445183 134446015 + 0 NA Intergenic Intergenic 4572 ENSMUSG00000087343.1 ENSMUSG00000087343 ENSMUST00000131110 1700021N21Rik antisense Interval_111727 chr4 26836822 26837118 + 0 NA Intergenic Intergenic -131521 ENSMUSG00000086257.1 ENSMUSG00000086257 ENSMUST00000154459 4930548K13Rik lincRNA Interval_41482 chr12 114927128 114927873 + 0 NA Intergenic Intergenic -2132 ENSMUSG00000102991.1 ENSMUSG00000102991 ENSMUST00000194231 Ighv1-40 IG_V_pseudogene Interval_93632 chr2 75241178 75241900 + 0 NA intron (ENSMUSG00000100303.3, intron 2 of 5) lincRNA-intron (ENSMUSG00000100303.3, intron 2 of 5) 49262 ENSMUSG00000075276.5 ENSMUSG00000075276 ENSMUST00000122260 Gm13653 processed_pseudogene Interval_107183 chr3 104424937 104425453 + 0 NA intron (ENSMUSG00000032913.13, intron 1 of 1) protein_coding-intron (ENSMUSG00000032913.13, intron 1 of 1) -6868 ENSMUSG00000106453.1 ENSMUSG00000106453 ENSMUST00000200606 Gm9273 processed_pseudogene Interval_70696 chr17 13573907 13575550 + 0 NA intron (ENSMUSG00000117042.1, intron 1 of 5) lincRNA-intron (ENSMUSG00000117063.1, intron 1 of 4) -40559 ENSMUSG00000095184.1 ENSMUSG00000095184 ENSMUST00000101829 Gm26375 snRNA Interval_167792 chr9 72733661 72734212 + 0 NA intron (ENSMUSG00000032216.15, intron 19 of 29) protein_coding-intron (ENSMUSG00000032216.15, intron 18 of 28) 5796 ENSMUSG00000102411.1 ENSMUSG00000102411 ENSMUST00000194508 Gm36936 TEC Interval_47410 chr13 83686301 83686731 + 0 NA promoter-TSS (ENSMUSG00000114254.1) processed_pseudogene-promoter-TSS (ENSMUSG00000114254.1) -706 ENSMUSG00000114254.1 ENSMUSG00000114254 ENSMUST00000224411 Gm48067 processed_pseudogene Interval_91679 chr2 47200027 47200408 + 0 NA Intergenic Intergenic -341767 ENSMUSG00000092853.1 ENSMUSG00000092853 ENSMUST00000175112 Gm25959 miRNA Interval_125592 chr5 72283908 72284116 + 0 NA intron (ENSMUSG00000046808.17, intron 2 of 5) polymorphic_pseudogene-intron (ENSMUSG00000046808.17, intron 2 of 6) 21450 ENSMUSG00000089195.1 ENSMUSG00000089195 ENSMUST00000158570 Gm25768 snRNA Interval_159475 chr8 94954981 94955604 + 0 NA Intergenic Intergenic 14462 ENSMUSG00000070111.4 ENSMUSG00000070111 ENSMUST00000093603 Gm10286 TEC Interval_132650 chr5 146955180 146956412 + 0 NA TTS (ENSMUSG00000016503.18) protein_coding-TTS (ENSMUSG00000016503.18) 7139 ENSMUSG00000016503.18 ENSMUSG00000016503 ENSMUST00000133296 Gtf3a protein_coding Interval_158004 chr8 77859920 77860206 + 0 NA Intergenic Intergenic 52528 ENSMUSG00000087761.1 ENSMUSG00000087761 ENSMUST00000157136 Gm23981 snRNA Interval_164948 chr9 43299549 43299744 + 0 NA Intergenic Intergenic -19313 ENSMUSG00000032013.6 ENSMUSG00000032013 ENSMUST00000217067 Trim29 protein_coding Interval_46165 chr13 62137415 62138274 + 0 NA TTS (ENSMUSG00000093874.1) snoRNA-TTS (ENSMUSG00000093874.1) 914 ENSMUSG00000093874.1 ENSMUSG00000093874 ENSMUST00000101994 Gm24539 snoRNA Interval_122547 chr5 23736829 23737680 + 0 NA Intergenic Intergenic -24588 ENSMUSG00000105987.4 ENSMUSG00000105987 ENSMUST00000197153 AI506816 processed_transcript Interval_36282 chr12 40654138 40655022 + 0 NA intron (ENSMUSG00000035954.10, intron 8 of 31) protein_coding-intron (ENSMUSG00000035954.10, intron 8 of 52) 208497 ENSMUSG00000035954.10 ENSMUSG00000035954 ENSMUST00000220850 Dock4 protein_coding Interval_154760 chr8 23168522 23169517 + 0 NA Intergenic Intergenic 15750 ENSMUSG00000063672.7 ENSMUSG00000063672 ENSMUST00000071588 Nkx6-3 protein_coding Interval_142218 chr6 139055722 139056064 + 0 NA Intergenic Intergenic -81234 ENSMUSG00000108178.1 ENSMUSG00000108178 ENSMUST00000204132 Gm44267 TEC Interval_27594 chr11 68939300 68940317 + 0 NA Intergenic Intergenic 8017 ENSMUSG00000052921.13 ENSMUSG00000052921 ENSMUST00000108670 Arhgef15 protein_coding Interval_13186 chr10 12904477 12905033 + 0 NA Intergenic Intergenic 18335 ENSMUSG00000097378.8 ENSMUSG00000097378 ENSMUST00000180529 B230208H11Rik lincRNA Interval_87285 chr19 47380904 47381256 + 0 NA intron (ENSMUSG00000053617.12, intron 2 of 4) protein_coding-intron (ENSMUSG00000053617.12, intron 3 of 14) 29279 ENSMUSG00000053617.12 ENSMUSG00000053617 ENSMUST00000237828 Sh3pxd2a protein_coding Interval_111220 chr4 15000770 15001911 + 0 NA intron (ENSMUSG00000040536.15, intron 7 of 13) protein_coding-intron (ENSMUSG00000040536.15, intron 6 of 12) -21242 ENSMUSG00000087241.1 ENSMUSG00000087241 ENSMUST00000129207 Gm11844 antisense Interval_53860 chr14 62854797 62855374 + 0 NA intron (ENSMUSG00000014547.10, intron 1 of 3) protein_coding-intron (ENSMUSG00000014547.10, intron 1 of 11) -10457 ENSMUSG00000098858.1 ENSMUSG00000098858 ENSMUST00000183649 Mir6541 miRNA Interval_70668 chr17 12924365 12926416 + 0 NA TTS (ENSMUSG00000068039.13) protein_coding-TTS (ENSMUSG00000068039.13) 2292 ENSMUSG00000062480.12 ENSMUSG00000062480 ENSMUST00000160921 Acat3 protein_coding Interval_90043 chr2 27492225 27494408 + 0 NA intron (ENSMUSG00000026918.16, intron 1 of 11) protein_coding-intron (ENSMUSG00000026918.16, intron 1 of 11) -21841 ENSMUSG00000026917.15 ENSMUSG00000026917 ENSMUST00000125088 Wdr5 protein_coding Interval_123023 chr5 28567976 28569735 + 0 NA intron (ENSMUSG00000097726.7, intron 2 of 6) antisense-intron (ENSMUSG00000097726.7, intron 2 of 6) -8418 ENSMUSG00000104587.1 ENSMUSG00000104587 ENSMUST00000197020 Gm43161 TEC Interval_104292 chr3 62937595 62939318 + 0 NA Intergenic Intergenic -14223 ENSMUSG00000063001.10 ENSMUSG00000063001 ENSMUST00000077976 Gm9701 processed_pseudogene Interval_135870 chr6 48073244 48073931 + 0 NA intron (ENSMUSG00000057691.8, intron 1 of 2) protein_coding-intron (ENSMUSG00000057691.8, intron 4 of 6) 8691 ENSMUSG00000057691.8 ENSMUSG00000057691 ENSMUST00000203994 Zfp746 protein_coding Interval_115767 chr4 103619101 103620349 + 0 NA promoter-TSS (ENSMUSG00000028519.16) protein_coding-promoter-TSS (ENSMUSG00000028519.16) -33325 ENSMUSG00000077514.1 ENSMUSG00000077514 ENSMUST00000104326 Gm25877 snoRNA Interval_12380 chr1 192790423 192790692 + 0 NA Intergenic Intergenic -19565 ENSMUSG00000037375.16 ENSMUSG00000037375 ENSMUST00000192946 Hhat protein_coding Interval_106333 chr3 95422618 95422847 + 0 NA Intergenic Intergenic -5831 ENSMUSG00000097532.2 ENSMUSG00000097532 ENSMUST00000238767 Gm4349 transcribed_unprocessed_pseudogene Interval_154510 chr8 18806011 18807572 + 0 NA Intergenic Intergenic -39486 ENSMUSG00000031467.10 ENSMUSG00000031467 ENSMUST00000033847 Agpat5 protein_coding Interval_167612 chr9 71130280 71130493 + 0 NA intron (ENSMUSG00000032204.13, intron 4 of 6) protein_coding-intron (ENSMUSG00000032204.13, intron 4 of 5) 3544 ENSMUSG00000111618.1 ENSMUSG00000111618 ENSMUST00000213527 Gm47268 processed_pseudogene Interval_129575 chr5 121068442 121069200 + 0 NA Intergenic Intergenic -58741 ENSMUSG00000029608.10 ENSMUSG00000029608 ENSMUST00000200792 Rph3a protein_coding Interval_50386 chr14 12340575 12341704 + 0 NA TTS (ENSMUSG00000021743.6) protein_coding-TTS (ENSMUSG00000021743.6) 4705 ENSMUSG00000021743.6 ENSMUSG00000021743 ENSMUST00000224023 Fezf2 protein_coding Interval_66893 chr16 38376458 38377002 + 0 NA intron (ENSMUSG00000022803.12, intron 2 of 2) protein_coding-intron (ENSMUSG00000022803.12, intron 3 of 3) 4732 ENSMUSG00000022803.12 ENSMUSG00000022803 ENSMUST00000146342 Popdc2 protein_coding Interval_127982 chr5 110077357 110077693 + 0 NA exon (ENSMUSG00000109771.1, exon 3 of 3) protein_coding-exon (ENSMUSG00000109771.1, exon 3 of 3) -5012 ENSMUSG00000090963.2 ENSMUSG00000090963 ENSMUST00000167969 Gm17655 protein_coding Interval_114837 chr4 86068132 86068500 + 0 NA intron (ENSMUSG00000066113.16, intron 1 of 8) protein_coding-intron (ENSMUSG00000066113.16, intron 1 of 12) -24822 ENSMUSG00000064687.1 ENSMUSG00000064687 ENSMUST00000082753 Gm25811 snRNA Interval_27264 chr11 65099769 65100561 + 0 NA intron (ENSMUSG00000033389.16, intron 1 of 20) protein_coding-intron (ENSMUSG00000033389.16, intron 1 of 20) -32358 ENSMUSG00000076394.1 ENSMUSG00000076394 ENSMUST00000102439 Gm25991 miRNA Interval_84201 chr19 8722829 8724115 + 0 NA promoter-TSS (ENSMUSG00000064721.4) snoRNA-promoter-TSS (ENSMUSG00000064721.4) -274 ENSMUSG00000010095.13 ENSMUSG00000010095 ENSMUST00000205538 Slc3a2 protein_coding Interval_32267 chr11 106612388 106613999 + 0 NA promoter-TSS (ENSMUSG00000040548.16) protein_coding-promoter-TSS (ENSMUSG00000040548.16) -46083 ENSMUSG00000040548.16 ENSMUSG00000040548 ENSMUST00000153870 Tex2 protein_coding Interval_7322 chr1 128897530 128897788 + 0 NA Intergenic Intergenic -11640 ENSMUSG00000064737.1 ENSMUSG00000064737 ENSMUST00000082803 Gm23056 snRNA Interval_36190 chr12 38654515 38654774 + 0 NA Intergenic Intergenic -40123 ENSMUSG00000112967.1 ENSMUSG00000112967 ENSMUST00000222922 4930428E07Rik antisense Interval_1771 chr1 33669379 33670836 + 0 NA promoter-TSS (ENSMUSG00000026134.11) protein_coding-promoter-TSS (ENSMUSG00000026134.11) 264 ENSMUSG00000103746.1 ENSMUSG00000103746 ENSMUST00000191965 1700001G17Rik TEC Interval_130957 chr5 134257605 134257793 + 0 NA TTS (ENSMUSG00000060261.15) protein_coding-TTS (ENSMUSG00000060261.15) 13037 ENSMUSG00000107000.1 ENSMUSG00000107000 ENSMUST00000201715 Gm43481 TEC Interval_140125 chr6 114479685 114480532 + 0 NA TTS (ENSMUSG00000053004.9) protein_coding-TTS (ENSMUSG00000053004.9) 76442 ENSMUSG00000053004.9 ENSMUSG00000053004 ENSMUST00000160780 Hrh1 protein_coding Interval_168736 chr9 86536726 86537118 + 0 NA intron (ENSMUSG00000034973.16, intron 29 of 37) protein_coding-intron (ENSMUSG00000034973.16, intron 28 of 36) 9873 ENSMUSG00000103731.1 ENSMUSG00000103731 ENSMUST00000194336 Gm17530 TEC Interval_81747 chr18 64351530 64352050 + 0 NA intron (ENSMUSG00000045991.19, intron 1 of 1) protein_coding-intron (ENSMUSG00000045991.19, intron 1 of 1) 11770 ENSMUSG00000045991.19 ENSMUSG00000045991 ENSMUST00000175965 Onecut2 protein_coding Interval_75433 chr17 66518966 66520211 + 0 NA promoter-TSS (ENSMUSG00000023460.13) protein_coding-promoter-TSS (ENSMUSG00000023460.13) 82 ENSMUSG00000023460.13 ENSMUSG00000023460 ENSMUST00000146279 Rab12 protein_coding Interval_119903 chr4 140788701 140789503 + 0 NA intron (ENSMUSG00000025328.9, intron 13 of 14) protein_coding-intron (ENSMUSG00000025328.9, intron 14 of 15) 14920 ENSMUSG00000025328.9 ENSMUSG00000025328 ENSMUST00000172098 Padi3 protein_coding Interval_55090 chr14 77926729 77927172 + 0 NA intron (ENSMUSG00000022014.15, intron 1 of 6) protein_coding-intron (ENSMUSG00000022014.15, intron 1 of 11) 22543 ENSMUSG00000022014.15 ENSMUSG00000022014 ENSMUST00000227903 Epsti1 protein_coding Interval_46453 chr13 66279718 66280655 + 0 NA promoter-TSS (ENSMUSG00000114239.1) processed_pseudogene-promoter-TSS (ENSMUSG00000114239.1) -129 ENSMUSG00000114239.1 ENSMUSG00000114239 ENSMUST00000225908 Gm48245 processed_pseudogene Interval_138445 chr6 88263820 88264035 + 0 NA intron (ENSMUSG00000033216.9, intron 5 of 5) protein_coding-intron (ENSMUSG00000033216.9, intron 6 of 6) -40288 ENSMUSG00000047046.8 ENSMUSG00000047046 ENSMUST00000156018 1700031F10Rik antisense Interval_66525 chr16 34801767 34801967 + 0 NA intron (ENSMUSG00000022836.11, intron 1 of 31) protein_coding-intron (ENSMUSG00000022836.11, intron 1 of 31) -103272 ENSMUSG00000022836.11 ENSMUSG00000022836 ENSMUST00000231589 Mylk protein_coding Interval_122655 chr5 24495735 24496092 + 0 NA intron (ENSMUSG00000023353.14, intron 4 of 8) protein_coding-intron (ENSMUSG00000023353.14, intron 11 of 17) 31289 ENSMUSG00000067724.5 ENSMUSG00000067724 ENSMUST00000088311 Gbx1 protein_coding Interval_148149 chr7 79495911 79496455 + 0 NA Intergenic Intergenic -3855 ENSMUSG00000097023.8 ENSMUSG00000097023 ENSMUST00000182125 Mir9-3hg lincRNA Interval_55621 chr14 96270643 96270862 + 0 NA intron (ENSMUSG00000022076.10, intron 5 of 10) protein_coding-intron (ENSMUSG00000022076.10, intron 5 of 10) 38799 ENSMUSG00000083933.1 ENSMUSG00000083933 ENSMUST00000117827 Gm15515 processed_pseudogene Interval_26711 chr11 59892126 59894830 + 0 NA Intergenic Intergenic -4896 ENSMUSG00000084766.1 ENSMUSG00000084766 ENSMUST00000143391 Gm12714 lincRNA Interval_89401 chr2 20481841 20483115 + 0 NA intron (ENSMUSG00000036617.17, intron 2 of 3) protein_coding-intron (ENSMUSG00000036617.17, intron 3 of 7) -27569 ENSMUSG00000036617.17 ENSMUSG00000036617 ENSMUST00000156587 Etl4 protein_coding Interval_74503 chr17 52458738 52459449 + 0 NA exon (ENSMUSG00000117035.1, exon 2 of 3) lincRNA-exon (ENSMUSG00000117035.1, exon 2 of 3) 2672 ENSMUSG00000117035.1 ENSMUSG00000117035 ENSMUST00000233404 Gm5094 lincRNA Interval_118251 chr4 129825902 129826115 + 0 NA intron (ENSMUSG00000028788.14, intron 1 of 5) protein_coding-intron (ENSMUSG00000028788.14, intron 1 of 5) 5300 ENSMUSG00000028788.14 ENSMUSG00000028788 ENSMUST00000141754 Ptp4a2 protein_coding Interval_2249 chr1 37355040 37355544 + 0 NA intron (ENSMUSG00000026113.17, intron 1 of 25) protein_coding-intron (ENSMUSG00000026113.17, intron 1 of 25) -2105 ENSMUSG00000026113.17 ENSMUSG00000026113 ENSMUST00000123124 Inpp4a protein_coding Interval_123663 chr5 34369073 34370730 + 0 NA promoter-TSS (ENSMUSG00000037210.16) protein_coding-promoter-TSS (ENSMUSG00000037210.16) 18785 ENSMUSG00000029110.13 ENSMUSG00000029110 ENSMUST00000183265 Rnf4 protein_coding Interval_101339 chr2 180566499 180567330 + 0 NA Intergenic Intergenic -14390 ENSMUSG00000027569.15 ENSMUSG00000027569 ENSMUST00000149969 Mrgbp protein_coding Interval_89565 chr2 22874710 22875101 + 0 NA exon (ENSMUSG00000026786.14, exon 14 of 14) protein_coding-exon (ENSMUSG00000026786.14, exon 14 of 14) -20690 ENSMUSG00000026784.14 ENSMUSG00000026784 ENSMUST00000149229 Pdss1 protein_coding Interval_134821 chr6 31861575 31862129 + 0 NA intron (ENSMUSG00000087379.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000087379.1, intron 1 of 2) 75177 ENSMUSG00000087379.1 ENSMUSG00000087379 ENSMUST00000153328 Gm13849 lincRNA Interval_13449 chr10 18356126 18357151 + 0 NA intron (ENSMUSG00000039835.16, intron 1 of 6) protein_coding-intron (ENSMUSG00000039835.16, intron 1 of 6) -19397 ENSMUSG00000111313.1 ENSMUSG00000111313 ENSMUST00000213578 Gm18942 processed_pseudogene Interval_16985 chr10 70287903 70288577 + 0 NA promoter-TSS (ENSMUSG00000052426.4) pseudogene-promoter-TSS (ENSMUSG00000052426.4) -64 ENSMUSG00000052426.4 ENSMUSG00000052426 ENSMUST00000064271 Gm9877 pseudogene Interval_103422 chr3 41471456 41471865 + 0 NA Intergenic Intergenic 10225 ENSMUSG00000105260.1 ENSMUSG00000105260 ENSMUST00000196123 Gm40040 lincRNA Interval_116139 chr4 108051744 108052020 + 0 NA intron (ENSMUSG00000028603.15, intron 2 of 3) protein_coding-intron (ENSMUSG00000028603.15, intron 14 of 15) -10082 ENSMUSG00000089051.1 ENSMUSG00000089051 ENSMUST00000158426 Gm23354 snRNA Interval_33391 chr11 116294061 116295135 + 0 NA intron (ENSMUSG00000020792.15, intron 11 of 19) protein_coding-intron (ENSMUSG00000020792.15, intron 10 of 19) -3128 ENSMUSG00000020792.15 ENSMUSG00000020792 ENSMUST00000124281 Exoc7 protein_coding Interval_52564 chr14 47537658 47539305 + 0 NA Intergenic Intergenic -3499 ENSMUSG00000115823.1 ENSMUSG00000115823 ENSMUST00000228568 Gm49004 antisense Interval_67610 chr16 52443984 52444322 + 0 NA intron (ENSMUSG00000022636.13, intron 1 of 14) protein_coding-intron (ENSMUSG00000022636.13, intron 1 of 15) 8312 ENSMUSG00000022636.13 ENSMUSG00000022636 ENSMUST00000168071 Alcam protein_coding Interval_48952 chr13 105642853 105643197 + 0 NA Intergenic Intergenic -73062 ENSMUSG00000114518.1 ENSMUSG00000114518 ENSMUST00000224120 Gm48208 processed_pseudogene Interval_81064 chr18 53480103 53480480 + 0 NA intron (ENSMUSG00000069378.14, intron 2 of 6) protein_coding-intron (ENSMUSG00000069378.14, intron 2 of 6) 16708 ENSMUSG00000069378.14 ENSMUSG00000069378 ENSMUST00000115398 Prdm6 protein_coding Interval_40006 chr12 100446047 100446339 + 0 NA intron (ENSMUSG00000033530.8, intron 2 of 7) protein_coding-intron (ENSMUSG00000033530.8, intron 5 of 19) -1533 ENSMUSG00000113864.1 ENSMUSG00000113864 ENSMUST00000222952 Gm48381 TEC Interval_7139 chr1 127108032 127108266 + 0 NA Intergenic Intergenic -57453 ENSMUSG00000101385.1 ENSMUSG00000101385 ENSMUST00000185860 Gm5261 processed_pseudogene Interval_119072 chr4 135361716 135363239 + 0 NA Intergenic Intergenic -14681 ENSMUSG00000084032.1 ENSMUSG00000084032 ENSMUST00000120561 Gm12991 processed_pseudogene Interval_6897 chr1 120480930 120481565 + 0 NA intron (ENSMUSG00000026390.7, intron 12 of 16) protein_coding-intron (ENSMUSG00000026390.7, intron 12 of 16) 23509 ENSMUSG00000026390.7 ENSMUSG00000026390 ENSMUST00000186432 Marco protein_coding Interval_122332 chr5 21413996 21415092 + 0 NA intron (ENSMUSG00000064280.14, intron 1 of 18) protein_coding-intron (ENSMUSG00000064280.14, intron 1 of 7) -10457 ENSMUSG00000047221.5 ENSMUSG00000047221 ENSMUST00000146056 Fam185a protein_coding Interval_26675 chr11 59624196 59624522 + 0 NA Intergenic Intergenic 13774 ENSMUSG00000044061.7 ENSMUSG00000044061 ENSMUST00000055276 Olfr225 polymorphic_pseudogene Interval_121857 chr5 8893182 8894462 + 0 NA promoter-TSS (ENSMUSG00000042476.12) protein_coding-promoter-TSS (ENSMUSG00000042476.12) -19149 ENSMUSG00000106664.1 ENSMUSG00000106664 ENSMUST00000199413 Gm17936 processed_pseudogene Interval_26539 chr11 58643333 58643893 + 0 NA intron (ENSMUSG00000037124.6, intron 2 of 5) protein_coding-intron (ENSMUSG00000037124.6, intron 2 of 5) 3148 ENSMUSG00000037124.6 ENSMUSG00000037124 ENSMUST00000075084 Trim58 protein_coding Interval_3909 chr1 64709868 64710348 + 0 NA intron (ENSMUSG00000070871.10, intron 4 of 4) protein_coding-intron (ENSMUSG00000070871.10, intron 4 of 9) 18925 ENSMUSG00000070871.10 ENSMUSG00000070871 ENSMUST00000094898 Ccnyl1 protein_coding Interval_42127 chr13 9016431 9017914 + 0 NA intron (ENSMUSG00000113543.1, intron 2 of 4) lincRNA-intron (ENSMUSG00000113543.1, intron 2 of 2) 24167 ENSMUSG00000113731.1 ENSMUSG00000113731 ENSMUST00000223218 Gm48650 processed_pseudogene Interval_41537 chr12 116077088 116078171 + 0 NA promoter-TSS (ENSMUSG00000011171.11) protein_coding-promoter-TSS (ENSMUSG00000011171.11) -144 ENSMUSG00000011171.11 ENSMUSG00000011171 ENSMUST00000176433 Vipr2 protein_coding Interval_89933 chr2 26578140 26578363 + 0 NA Intergenic Intergenic -8379 ENSMUSG00000026921.20 ENSMUSG00000026921 ENSMUST00000172683 Egfl7 protein_coding Interval_17459 chr10 77007570 77008871 + 0 NA intron (ENSMUSG00000112143.1, intron 1 of 4) lincRNA-intron (ENSMUSG00000112143.1, intron 1 of 4) 349 ENSMUSG00000112143.1 ENSMUSG00000112143 ENSMUST00000220294 Gm35721 lincRNA Interval_86508 chr19 41258857 41259154 + 0 NA intron (ENSMUSG00000025016.11, intron 1 of 14) protein_coding-intron (ENSMUSG00000025016.11, intron 1 of 13) 4975 ENSMUSG00000025016.11 ENSMUSG00000025016 ENSMUST00000237871 Tm9sf3 protein_coding Interval_116965 chr4 118507164 118508005 + 0 NA Intergenic Intergenic -9942 ENSMUSG00000080857.1 ENSMUSG00000080857 ENSMUST00000117834 Gm12859 processed_pseudogene Interval_77132 chr17 86769829 86770092 + 0 NA intron (ENSMUSG00000024140.10, intron 1 of 15) protein_coding-intron (ENSMUSG00000024140.10, intron 1 of 15) -3310 ENSMUSG00000117538.1 ENSMUSG00000117538 ENSMUST00000234482 Gm50008 TEC Interval_86711 chr19 42869315 42870556 + 0 NA intron (ENSMUSG00000074852.4, intron 9 of 11) protein_coding-intron (ENSMUSG00000074852.4, intron 9 of 11) 90825 ENSMUSG00000090235.1 ENSMUSG00000090235 ENSMUST00000160001 Gm16244 processed_transcript Interval_67802 chr16 57291912 57292169 + 0 NA exon (ENSMUSG00000022753.15, exon 1 of 7) protein_coding-exon (ENSMUSG00000022753.15, exon 1 of 7) 811 ENSMUSG00000022753.15 ENSMUSG00000022753 ENSMUST00000120112 Tmem30c protein_coding Interval_139025 chr6 94264677 94266089 + 0 NA intron (ENSMUSG00000045095.16, intron 1 of 2) protein_coding-intron (ENSMUSG00000045095.16, intron 1 of 21) 58651 ENSMUSG00000107545.1 ENSMUSG00000107545 ENSMUST00000204466 Gm44307 processed_pseudogene Interval_120765 chr4 150531848 150532304 + 0 NA intron (ENSMUSG00000039852.17, intron 10 of 22) protein_coding-intron (ENSMUSG00000039852.17, intron 4 of 16) 36468 ENSMUSG00000085213.1 ENSMUSG00000085213 ENSMUST00000128800 Gm13091 antisense Interval_150869 chr7 116067670 116068354 + 0 NA intron (ENSMUSG00000030663.12, intron 1 of 7) protein_coding-intron (ENSMUSG00000030663.12, intron 1 of 4) 16546 ENSMUSG00000091900.3 ENSMUSG00000091900 ENSMUST00000111755 Gm4353 processed_pseudogene Interval_53933 chr14 63489270 63491568 + 0 NA Intergenic Intergenic -3280 ENSMUSG00000090374.1 ENSMUSG00000090374 ENSMUST00000164515 Gm17232 antisense Interval_111142 chr4 13095308 13096812 + 0 NA intron (ENSMUSG00000086227.1, intron 3 of 3) lincRNA-intron (ENSMUSG00000086227.1, intron 3 of 3) 19920 ENSMUSG00000086227.1 ENSMUSG00000086227 ENSMUST00000139614 Gm11820 lincRNA Interval_863 chr1 12778572 12778810 + 0 NA intron (ENSMUSG00000016918.15, intron 2 of 3) protein_coding-intron (ENSMUSG00000016918.15, intron 2 of 21) 59227 ENSMUSG00000016918.15 ENSMUSG00000016918 ENSMUST00000185780 Sulf1 protein_coding Interval_163461 chr9 21545576 21547706 + 0 NA promoter-TSS (ENSMUSG00000032185.15) protein_coding-promoter-TSS (ENSMUSG00000032185.15) -12656 ENSMUSG00000092261.1 ENSMUSG00000092261 ENSMUST00000173684 Gm20519 processed_pseudogene Interval_121838 chr5 8727546 8728334 + 0 NA intron (ENSMUSG00000040584.8, intron 3 of 9) protein_coding-intron (ENSMUSG00000040584.8, intron 21 of 27) 7828 ENSMUSG00000104535.1 ENSMUSG00000104535 ENSMUST00000199172 Gm42686 TEC Interval_59718 chr15 58879951 58880704 + 0 NA Intergenic Intergenic 7653 ENSMUSG00000037085.8 ENSMUSG00000037085 ENSMUST00000036937 Trmt12 protein_coding Interval_108463 chr3 127429813 127430944 + 0 NA intron (ENSMUSG00000032826.19, intron 1 of 1) protein_coding-intron (ENSMUSG00000032826.19, intron 1 of 1) -36672 ENSMUSG00000105822.1 ENSMUSG00000105822 ENSMUST00000199858 Gm42969 TEC Interval_110678 chr4 6293143 6293369 + 0 NA Intergenic Intergenic -17623 ENSMUSG00000028240.2 ENSMUSG00000028240 ENSMUST00000147346 Cyp7a1 protein_coding Interval_158848 chr8 87219129 87219890 + 0 NA intron (ENSMUSG00000098257.1, intron 2 of 4) lincRNA-intron (ENSMUSG00000098257.1, intron 2 of 4) 16483 ENSMUSG00000098257.1 ENSMUSG00000098257 ENSMUST00000183344 Gm27169 lincRNA Interval_88726 chr2 10027006 10027201 + 0 NA intron (ENSMUSG00000025782.12, intron 2 of 6) protein_coding-intron (ENSMUSG00000025782.12, intron 2 of 6) -20735 ENSMUSG00000103570.1 ENSMUSG00000103570 ENSMUST00000194765 C630004M23Rik TEC Interval_134714 chr6 30617153 30618974 + 0 NA intron (ENSMUSG00000029788.13, intron 3 of 10) protein_coding-intron (ENSMUSG00000029788.13, intron 4 of 11) 5508 ENSMUSG00000029788.13 ENSMUSG00000029788 ENSMUST00000165949 Cpa5 protein_coding Interval_61262 chr15 80325028 80326684 + 0 NA intron (ENSMUSG00000022416.15, intron 4 of 36) protein_coding-intron (ENSMUSG00000022416.15, intron 4 of 36) -61610 ENSMUSG00000051518.8 ENSMUSG00000051518 ENSMUST00000229962 Rps19bp1 protein_coding Interval_41713 chr12 118198281 118199255 + 0 NA exon (ENSMUSG00000018581.15, exon 1 of 82) protein_coding-exon (ENSMUSG00000018581.15, exon 1 of 82) 35796 ENSMUSG00000113831.1 ENSMUSG00000113831 ENSMUST00000220671 Gm49602 lincRNA Interval_160750 chr8 111943194 111944326 + 0 NA intron (ENSMUSG00000031950.7, intron 2 of 2) protein_coding-intron (ENSMUSG00000031950.7, intron 3 of 3) 2692 ENSMUSG00000031950.7 ENSMUSG00000031950 ENSMUST00000133628 Gabarapl2 protein_coding Interval_11987 chr1 188418844 188419078 + 0 NA intron (ENSMUSG00000026609.15, intron 14 of 19) protein_coding-intron (ENSMUSG00000026609.15, intron 13 of 70) 156938 ENSMUSG00000026609.15 ENSMUSG00000026609 ENSMUST00000127077 Ush2a protein_coding Interval_107246 chr3 104935902 104936725 + 0 NA Intergenic Intergenic -20150 ENSMUSG00000106105.1 ENSMUSG00000106105 ENSMUST00000198831 Gm4525 processed_pseudogene Interval_1318 chr1 20508481 20508773 + 0 NA intron (ENSMUSG00000043760.16, intron 34 of 66) protein_coding-intron (ENSMUSG00000043760.16, intron 34 of 66) -63715 ENSMUSG00000070175.1 ENSMUSG00000070175 ENSMUST00000093665 Gm24162 snRNA Interval_151347 chr7 121361176 121362224 + 0 NA intron (ENSMUSG00000108351.1, intron 1 of 2) antisense-intron (ENSMUSG00000108351.1, intron 1 of 2) -30159 ENSMUSG00000046321.8 ENSMUSG00000046321 ENSMUST00000084628 Hs3st2 protein_coding Interval_12956 chr10 8729149 8729578 + 0 NA exon (ENSMUSG00000015305.6, exon 18 of 20) protein_coding-exon (ENSMUSG00000015305.6, exon 18 of 20) 16122 ENSMUSG00000111215.1 ENSMUSG00000111215 ENSMUST00000213934 Gm48654 lincRNA Interval_129465 chr5 120375002 120375427 + 0 NA Intergenic Intergenic -29246 ENSMUSG00000107141.1 ENSMUSG00000107141 ENSMUST00000200789 Gm42654 lincRNA Interval_144735 chr7 27883839 27885379 + 0 NA promoter-TSS (ENSMUSG00000108314.1) processed_pseudogene-promoter-TSS (ENSMUSG00000108314.1) -99 ENSMUSG00000108314.1 ENSMUSG00000108314 ENSMUST00000206136 Prkcz2 processed_pseudogene Interval_94153 chr2 84721094 84721385 + 0 NA TTS (ENSMUSG00000027079.15) protein_coding-TTS (ENSMUSG00000027079.15) 6003 ENSMUSG00000027079.15 ENSMUSG00000027079 ENSMUST00000138231 Clp1 protein_coding Interval_42710 chr13 18391320 18392248 + 0 NA intron (ENSMUSG00000009734.18, intron 1 of 3) protein_coding-intron (ENSMUSG00000009734.18, intron 1 of 3) 5902 ENSMUSG00000009734.18 ENSMUSG00000009734 ENSMUST00000222900 Pou6f2 protein_coding Interval_120745 chr4 150397134 150397710 + 0 NA intron (ENSMUSG00000039852.17, intron 1 of 22) protein_coding-intron (ENSMUSG00000039852.17, intron 1 of 22) 76229 ENSMUSG00000089292.1 ENSMUSG00000089292 ENSMUST00000158667 Gm23209 snRNA Interval_110261 chr3 155078904 155079162 + 0 NA Intergenic Intergenic -12985 ENSMUSG00000064765.1 ENSMUSG00000064765 ENSMUST00000082831 Gm26456 misc_RNA Interval_29952 chr11 88334567 88335109 + 0 NA promoter-TSS (ENSMUSG00000081304.1) processed_pseudogene-promoter-TSS (ENSMUSG00000081304.1) -822 ENSMUSG00000081304.1 ENSMUSG00000081304 ENSMUST00000117358 Gm11509 processed_pseudogene Interval_153844 chr8 9596048 9596608 + 0 NA exon (ENSMUSG00000109359.1, exon 1 of 1) TEC-exon (ENSMUSG00000109359.1, exon 1 of 1) 617 ENSMUSG00000109359.1 ENSMUSG00000109359 ENSMUST00000208780 Gm44797 TEC Interval_131630 chr5 138940486 138941294 + 0 NA Intergenic Intergenic 53391 ENSMUSG00000025856.15 ENSMUSG00000025856 ENSMUST00000132051 Pdgfa protein_coding Interval_19797 chr10 109128307 109128645 + 0 NA Intergenic Intergenic -38201 ENSMUSG00000088554.1 ENSMUSG00000088554 ENSMUST00000157929 Gm22097 misc_RNA Interval_72283 chr17 28973498 28974282 + 0 NA promoter-TSS (ENSMUSG00000024006.17) protein_coding-promoter-TSS (ENSMUSG00000024006.17) 16258 ENSMUSG00000084632.1 ENSMUSG00000084632 ENSMUST00000122683 Gm23887 snRNA Interval_98317 chr2 150971519 150973588 + 0 NA intron (ENSMUSG00000068115.13, intron 2 of 4) protein_coding-intron (ENSMUSG00000068115.13, intron 5 of 23) -1473 ENSMUSG00000068115.13 ENSMUSG00000068115 ENSMUST00000128627 Ninl protein_coding Interval_91670 chr2 46729668 46731093 + 0 NA Intergenic Intergenic -123297 ENSMUSG00000089144.1 ENSMUSG00000089144 ENSMUST00000158519 Gm25264 snoRNA Interval_75388 chr17 66301096 66302254 + 0 NA Intergenic Intergenic 17837 ENSMUSG00000117010.1 ENSMUSG00000117010 ENSMUST00000233050 Gm49933 processed_pseudogene Interval_13439 chr10 18234117 18235686 + 0 NA promoter-TSS (ENSMUSG00000059554.12) protein_coding-promoter-TSS (ENSMUSG00000059554.12) -465 ENSMUSG00000096977.2 ENSMUSG00000096977 ENSMUST00000216248 Gm10827 lincRNA Interval_2523 chr1 39944671 39945216 + 0 NA intron (ENSMUSG00000026074.15, intron 2 of 31) protein_coding-intron (ENSMUSG00000026074.15, intron 2 of 30) 43764 ENSMUSG00000026074.15 ENSMUSG00000026074 ENSMUST00000191657 Map4k4 protein_coding Interval_128792 chr5 115279440 115280437 + 0 NA exon (ENSMUSG00000041733.10, exon 1 of 1) protein_coding-exon (ENSMUSG00000041733.10, exon 1 of 1) 243 ENSMUSG00000041733.10 ENSMUSG00000041733 ENSMUST00000129024 Coq5 protein_coding Interval_80099 chr18 37504263 37504625 + 0 NA TTS (ENSMUSG00000043313.6) protein_coding-TTS (ENSMUSG00000043313.6) 180 ENSMUSG00000046191.7 ENSMUSG00000046191 ENSMUST00000052179 Pcdhb20 protein_coding Interval_162884 chr9 11399894 11402349 + 0 NA Intergenic Intergenic -123078 ENSMUSG00000110734.1 ENSMUSG00000110734 ENSMUST00000216671 Gm18934 processed_pseudogene Interval_78122 chr18 8693655 8694548 + 0 NA promoter-TSS (ENSMUSG00000092097.2) processed_pseudogene-promoter-TSS (ENSMUSG00000092097.2) 2 ENSMUSG00000092097.2 ENSMUSG00000092097 ENSMUST00000171469 Gm5819 processed_pseudogene Interval_142085 chr6 137035282 137037523 + 0 NA Intergenic Intergenic 49806 ENSMUSG00000107734.1 ENSMUSG00000107734 ENSMUST00000203175 Gm30055 TEC Interval_167378 chr9 67966021 67966287 + 0 NA intron (ENSMUSG00000035284.10, intron 11 of 19) protein_coding-intron (ENSMUSG00000035284.10, intron 73 of 84) 59560 ENSMUSG00000111841.1 ENSMUSG00000111841 ENSMUST00000216827 Gm20745 lincRNA Interval_17919 chr10 80831266 80831785 + 0 NA Intergenic Intergenic 2728 ENSMUSG00000087993.1 ENSMUSG00000087993 ENSMUST00000157368 Mir1982 miRNA Interval_129748 chr5 122103226 122103437 + 0 NA promoter-TSS (ENSMUSG00000013936.12) protein_coding-promoter-TSS (ENSMUSG00000013936.12) 2299 ENSMUSG00000013936.12 ENSMUSG00000013936 ENSMUST00000126006 Myl2 protein_coding Interval_6089 chr1 96679957 96680614 + 0 NA Intergenic Intergenic -17712 ENSMUSG00000100589.1 ENSMUSG00000100589 ENSMUST00000189056 4930533P14Rik lincRNA Interval_10932 chr1 177181813 177182085 + 0 NA intron (ENSMUSG00000019699.16, intron 1 of 12) protein_coding-intron (ENSMUSG00000019699.16, intron 1 of 12) -11087 ENSMUSG00000103646.1 ENSMUSG00000103646 ENSMUST00000195379 Gm37706 TEC Interval_108737 chr3 130864458 130864940 + 0 NA intron (ENSMUSG00000106095.2, intron 1 of 2) lincRNA-intron (ENSMUSG00000106095.2, intron 1 of 2) -2580 ENSMUSG00000104557.1 ENSMUSG00000104557 ENSMUST00000200449 Gm36520 lincRNA Interval_141155 chr6 125308882 125309443 + 0 NA TTS (ENSMUSG00000030339.7) protein_coding-TTS (ENSMUSG00000030339.7) 403 ENSMUSG00000030339.7 ENSMUSG00000030339 ENSMUST00000160901 Ltbr protein_coding Interval_75993 chr17 74228196 74228715 + 0 NA intron (ENSMUSG00000058704.9, intron 3 of 6) protein_coding-intron (ENSMUSG00000058704.9, intron 5 of 8) 16497 ENSMUSG00000117262.1 ENSMUSG00000117262 ENSMUST00000233585 Gm9316 processed_pseudogene Interval_49011 chr13 106904150 106904678 + 0 NA intron (ENSMUSG00000042590.17, intron 4 of 29) protein_coding-intron (ENSMUSG00000042590.17, intron 5 of 29) 41115 ENSMUSG00000114572.1 ENSMUSG00000114572 ENSMUST00000225875 Gm48457 processed_pseudogene Interval_91224 chr2 36062432 36062692 + 0 NA intron (ENSMUSG00000026894.4, intron 4 of 4) protein_coding-intron (ENSMUSG00000026894.4, intron 4 of 4) 6727 ENSMUSG00000107351.1 ENSMUSG00000107351 ENSMUST00000202553 Gm43764 TEC Interval_172171 chrX 8167502 8168787 + 0 NA intron (ENSMUSG00000039201.10, intron 2 of 4) protein_coding-intron (ENSMUSG00000039201.10, intron 3 of 5) 8037 ENSMUSG00000039201.10 ENSMUSG00000039201 ENSMUST00000143984 Tbc1d25 protein_coding Interval_134186 chr6 22442617 22445401 + 0 NA Intergenic Intergenic -100096 ENSMUSG00000029672.16 ENSMUSG00000029672 ENSMUST00000168965 Fam3c protein_coding Interval_144752 chr7 28037629 28038402 + 0 NA Intergenic Intergenic 12033 ENSMUSG00000030603.16 ENSMUSG00000030603 ENSMUST00000126528 Psmc4 protein_coding Interval_52355 chr14 45373347 45373532 + 0 NA intron (ENSMUSG00000053205.9, intron 1 of 1) protein_coding-intron (ENSMUSG00000053205.9, intron 11 of 11) 10004 ENSMUSG00000037722.8 ENSMUSG00000037722 ENSMUST00000226590 Gnpnat1 protein_coding Interval_152161 chr7 130277699 130278080 + 0 NA intron (ENSMUSG00000030849.18, intron 2 of 6) protein_coding-intron (ENSMUSG00000030849.18, intron 2 of 6) -11634 ENSMUSG00000030849.18 ENSMUSG00000030849 ENSMUST00000208844 Fgfr2 protein_coding Interval_20931 chr10 122191420 122192113 + 0 NA Intergenic Intergenic -7384 ENSMUSG00000112305.1 ENSMUSG00000112305 ENSMUST00000220445 Gm48875 processed_pseudogene Interval_125147 chr5 64852722 64853311 + 0 NA Intergenic Intergenic 45953 ENSMUSG00000118495.1 ENSMUSG00000118495 ENSMUST00000238830 AC161757.1 processed_pseudogene Interval_109582 chr3 144654105 144654894 + 0 NA Intergenic Intergenic -28535 ENSMUSG00000105045.1 ENSMUSG00000105045 ENSMUST00000198343 Rpl9-ps8 processed_pseudogene Interval_144044 chr7 19163969 19165261 + 0 NA exon (ENSMUSG00000030406.7, exon 3 of 14) protein_coding-exon (ENSMUSG00000030406.7, exon 3 of 14) 1512 ENSMUSG00000030406.7 ENSMUSG00000030406 ENSMUST00000206137 Gipr protein_coding Interval_72380 chr17 29494558 29494946 + 0 NA TTS (ENSMUSG00000024014.8) protein_coding-TTS (ENSMUSG00000024014.8) 1715 ENSMUSG00000024014.8 ENSMUSG00000024014 ENSMUST00000234270 Pim1 protein_coding Interval_130206 chr5 124930017 124930292 + 0 NA Intergenic Intergenic 56002 ENSMUSG00000079215.8 ENSMUSG00000079215 ENSMUST00000134473 Zfp664 protein_coding Interval_48563 chr13 100271387 100271845 + 0 NA intron (ENSMUSG00000114576.1, intron 2 of 4) unprocessed_pseudogene-intron (ENSMUSG00000114576.1, intron 2 of 4) 7201 ENSMUSG00000114576.1 ENSMUSG00000114576 ENSMUST00000224886 Naip3-ps1 unprocessed_pseudogene Interval_45239 chr13 53426114 53427197 + 0 NA intron (ENSMUSG00000107008.3, intron 4 of 7) lincRNA-intron (ENSMUSG00000107008.3, intron 4 of 7) -11825 ENSMUSG00000107305.1 ENSMUSG00000107305 ENSMUST00000202970 Gm43262 lincRNA Interval_156823 chr8 60870181 60871947 + 0 NA Intergenic Intergenic 24752 ENSMUSG00000110261.1 ENSMUSG00000110261 ENSMUST00000211229 Gm45485 processed_pseudogene Interval_151442 chr7 122477654 122478658 + 0 NA intron (ENSMUSG00000052889.11, intron 5 of 17) protein_coding-intron (ENSMUSG00000052889.11, intron 5 of 16) 6264 ENSMUSG00000087520.2 ENSMUSG00000087520 ENSMUST00000140453 Gm14389 processed_pseudogene Interval_34564 chr12 5191638 5192699 + 0 NA intron (ENSMUSG00000020627.10, intron 2 of 11) protein_coding-intron (ENSMUSG00000020627.10, intron 3 of 13) 43796 ENSMUSG00000112020.1 ENSMUSG00000112020 ENSMUST00000219031 Gm48532 TEC Interval_32574 chr11 108724944 108725373 + 0 NA intron (ENSMUSG00000020728.17, intron 1 of 3) protein_coding-intron (ENSMUSG00000020728.17, intron 22 of 27) 8675 ENSMUSG00000083723.1 ENSMUSG00000083723 ENSMUST00000118777 Rpl23a-ps14 processed_pseudogene Interval_22906 chr11 17269374 17269573 + 0 NA TTS (ENSMUSG00000000581.8) protein_coding-TTS (ENSMUSG00000000581.8) 11785 ENSMUSG00000000581.8 ENSMUSG00000000581 ENSMUST00000130330 C1d protein_coding Interval_108092 chr3 121453728 121454098 + 0 NA intron (ENSMUSG00000053931.11, intron 4 of 5) protein_coding-intron (ENSMUSG00000053931.11, intron 5 of 6) -3200 ENSMUSG00000053931.11 ENSMUSG00000053931 ENSMUST00000199499 Cnn3 protein_coding Interval_67071 chr16 42569551 42570535 + 0 NA Intergenic Intergenic -93883 ENSMUSG00000116679.1 ENSMUSG00000116679 ENSMUST00000232064 Gm49739 processed_pseudogene Interval_109407 chr3 141931308 141931783 + 0 NA promoter-TSS (ENSMUSG00000052430.15) protein_coding-promoter-TSS (ENSMUSG00000052430.15) -37 ENSMUSG00000052430.15 ENSMUSG00000052430 ENSMUST00000106230 Bmpr1b protein_coding Interval_71799 chr17 26174590 26175581 + 0 NA intron (ENSMUSG00000024182.16, intron 3 of 9) protein_coding-intron (ENSMUSG00000024182.16, intron 3 of 10) -13068 ENSMUSG00000024182.16 ENSMUSG00000024182 ENSMUST00000169268 Axin1 protein_coding Interval_125850 chr5 75012148 75013675 + 0 NA intron (ENSMUSG00000029229.8, intron 3 of 4) protein_coding-intron (ENSMUSG00000029229.8, intron 3 of 5) 10170 ENSMUSG00000107205.1 ENSMUSG00000107205 ENSMUST00000202336 Gm42576 TEC Interval_148359 chr7 80749241 80750106 + 0 NA exon (ENSMUSG00000030536.10, exon 14 of 14) protein_coding-exon (ENSMUSG00000030536.10, exon 14 of 14) -2149 ENSMUSG00000108321.1 ENSMUSG00000108321 ENSMUST00000205608 Gm44649 antisense Interval_92828 chr2 66041466 66042395 + 0 NA Intergenic Intergenic 53294 ENSMUSG00000026994.9 ENSMUSG00000026994 ENSMUST00000153563 Galnt3 protein_coding Interval_33116 chr11 114553803 114554877 + 0 NA Intergenic Intergenic -105480 ENSMUSG00000062391.3 ENSMUSG00000062391 ENSMUST00000141088 4932435O22Rik lincRNA Interval_17736 chr10 79818263 79818916 + 0 NA intron (ENSMUSG00000035863.14, intron 3 of 3) protein_coding-intron (ENSMUSG00000035863.14, intron 8 of 8) 3919 ENSMUSG00000035863.14 ENSMUSG00000035863 ENSMUST00000220365 Palm protein_coding Interval_169313 chr9 96337401 96337824 + 0 NA intron (ENSMUSG00000032412.8, intron 5 of 6) protein_coding-intron (ENSMUSG00000032412.8, intron 5 of 6) 5969 ENSMUSG00000032412.8 ENSMUSG00000032412 ENSMUST00000187341 Atp1b3 protein_coding Interval_98983 chr2 156474429 156476507 + 0 NA promoter-TSS (ENSMUSG00000027624.20) protein_coding-promoter-TSS (ENSMUSG00000027624.20) -19817 ENSMUSG00000085524.1 ENSMUSG00000085524 ENSMUST00000147187 Gm14224 antisense Interval_140883 chr6 122580713 122581643 + 0 NA TTS (ENSMUSG00000040613.14) protein_coding-TTS (ENSMUSG00000040613.14) -10329 ENSMUSG00000090192.1 ENSMUSG00000090192 ENSMUST00000162608 Gm16556 processed_transcript Interval_79403 chr18 31689015 31689269 + 0 NA intron (ENSMUSG00000024260.14, intron 14 of 20) protein_coding-intron (ENSMUSG00000024260.14, intron 14 of 20) -49573 ENSMUSG00000117533.1 ENSMUSG00000117533 ENSMUST00000234849 Gm50060 processed_pseudogene Interval_85157 chr19 23202328 23202762 + 0 NA Intergenic Intergenic 53114 ENSMUSG00000080626.1 ENSMUSG00000080626 ENSMUST00000116976 Mir1192 miRNA Interval_8086 chr1 135654638 135655756 + 0 NA intron (ENSMUSG00000009418.16, intron 1 of 30) protein_coding-intron (ENSMUSG00000009418.16, intron 1 of 1) -64864 ENSMUSG00000026421.14 ENSMUSG00000026421 ENSMUST00000027677 Csrp1 protein_coding Interval_151861 chr7 127176515 127178895 + 0 NA Intergenic Intergenic -4500 ENSMUSG00000108717.1 ENSMUSG00000108717 ENSMUST00000206225 Gm44940 TEC Interval_14319 chr10 30809963 30811429 + 0 NA Intergenic Intergenic -28425 ENSMUSG00000110744.1 ENSMUSG00000110744 ENSMUST00000214944 Gm5171 processed_pseudogene Interval_101099 chr2 177943356 177943592 + 0 NA intron (ENSMUSG00000078862.10, intron 4 of 4) protein_coding-intron (ENSMUSG00000078862.10, intron 4 of 4) 10210 ENSMUSG00000078862.10 ENSMUSG00000078862 ENSMUST00000108928 Gm14326 protein_coding Interval_155947 chr8 41224022 41224416 + 0 NA Intergenic Intergenic 6080 ENSMUSG00000085445.1 ENSMUSG00000085445 ENSMUST00000142897 Gm16348 processed_transcript Interval_80809 chr18 47368319 47370686 + 0 NA promoter-TSS (ENSMUSG00000019647.16) protein_coding-promoter-TSS (ENSMUSG00000019647.16) -36154 ENSMUSG00000019647.16 ENSMUSG00000019647 ENSMUST00000144223 Sema6a protein_coding Interval_18530 chr10 87016166 87016999 + 0 NA intron (ENSMUSG00000089656.1, intron 1 of 2) antisense-intron (ENSMUSG00000089656.1, intron 1 of 2) 16285 ENSMUSG00000089666.1 ENSMUSG00000089666 ENSMUST00000160532 Gm16269 processed_pseudogene Interval_3363 chr1 57428819 57430845 + 0 NA Intergenic Intergenic -7459 ENSMUSG00000077776.1 ENSMUSG00000077776 ENSMUST00000104588 Gm22371 snoRNA Interval_115728 chr4 103101848 103102271 + 0 NA intron (ENSMUSG00000035126.19, intron 2 of 14) protein_coding-intron (ENSMUSG00000035126.19, intron 2 of 15) -1468 ENSMUSG00000080744.1 ENSMUSG00000080744 ENSMUST00000119011 Gm12710 processed_pseudogene Interval_57755 chr15 18818299 18819127 + 0 NA promoter-TSS (ENSMUSG00000084873.3) lincRNA-promoter-TSS (ENSMUSG00000084873.3) 61 ENSMUSG00000084873.3 ENSMUSG00000084873 ENSMUST00000150382 C030047K22Rik lincRNA Interval_22954 chr11 17936829 17938342 + 0 NA Intergenic Intergenic 16290 ENSMUSG00000016984.7 ENSMUSG00000016984 ENSMUST00000076661 Etaa1 protein_coding Interval_117092 chr4 119467573 119468954 + 0 NA TTS (ENSMUSG00000070806.5) protein_coding-TTS (ENSMUSG00000070806.5) 24246 ENSMUSG00000048899.8 ENSMUSG00000048899 ENSMUST00000126728 Rimkla protein_coding Interval_168004 chr9 75361659 75362273 + 0 NA Intergenic Intergenic 11133 ENSMUSG00000111545.1 ENSMUSG00000111545 ENSMUST00000214879 Gm18015 processed_pseudogene Interval_132551 chr5 146244095 146244307 + 0 NA intron (ENSMUSG00000029635.15, intron 1 of 11) protein_coding-intron (ENSMUSG00000029635.15, intron 1 of 12) -4350 ENSMUSG00000080957.1 ENSMUSG00000080957 ENSMUST00000118049 Gm15739 processed_pseudogene Interval_125388 chr5 66617933 66619175 + 0 NA promoter-TSS (ENSMUSG00000029207.16) protein_coding-promoter-TSS (ENSMUSG00000029207.16) -22984 ENSMUSG00000106706.1 ENSMUSG00000106706 ENSMUST00000201865 C530043K16Rik TEC Interval_38324 chr12 77197123 77198089 + 0 NA Intergenic Intergenic 41057 ENSMUSG00000112150.1 ENSMUSG00000112150 ENSMUST00000219513 9530018F02Rik bidirectional_promoter_lncRNA Interval_101612 chr3 7713042 7713397 + 0 NA Intergenic Intergenic -99492 ENSMUSG00000040329.14 ENSMUSG00000040329 ENSMUST00000191681 Il7 protein_coding Interval_123941 chr5 36766531 36766864 + 0 NA promoter-TSS (ENSMUSG00000115557.1) unitary_pseudogene-promoter-TSS (ENSMUSG00000115557.1) -2 ENSMUSG00000115557.1 ENSMUSG00000115557 ENSMUST00000227994 Gm40318 unitary_pseudogene Interval_109090 chr3 135674952 135675646 + 0 NA intron (ENSMUSG00000028163.17, intron 1 of 11) protein_coding-intron (ENSMUSG00000028163.17, intron 1 of 24) -20733 ENSMUSG00000106149.1 ENSMUSG00000106149 ENSMUST00000196513 Gm43430 TEC Interval_73808 chr17 43953346 43954209 + 0 NA intron (ENSMUSG00000039601.16, intron 1 of 2) protein_coding-intron (ENSMUSG00000039601.16, intron 1 of 3) 8064 ENSMUSG00000088576.1 ENSMUSG00000088576 ENSMUST00000157951 Gm24532 misc_RNA Interval_101040 chr2 174450347 174450818 + 0 NA promoter-TSS (ENSMUSG00000016255.5) protein_coding-promoter-TSS (ENSMUSG00000016255.5) -113 ENSMUSG00000016255.5 ENSMUSG00000016255 ENSMUST00000016399 Tubb1 protein_coding Interval_91945 chr2 51914652 51915465 + 0 NA Intergenic Intergenic 19586 ENSMUSG00000036249.16 ENSMUSG00000036249 ENSMUST00000132703 Rbm43 protein_coding Interval_100278 chr2 168124747 168126111 + 0 NA intron (ENSMUSG00000118526.2, intron 2 of 7) unitary_pseudogene-intron (ENSMUSG00000118526.2, intron 2 of 7) 10552 ENSMUSG00000118526.2 ENSMUSG00000118526 ENSMUST00000239040 AL831766.1 unitary_pseudogene Interval_62435 chr15 92683734 92684261 + 0 NA intron (ENSMUSG00000036218.16, intron 5 of 9) protein_coding-intron (ENSMUSG00000036218.16, intron 3 of 7) 21958 ENSMUSG00000115858.1 ENSMUSG00000115858 ENSMUST00000230757 4930588J15Rik antisense Interval_121714 chr5 5645921 5646394 + 0 NA TTS (ENSMUSG00000040473.15) protein_coding-TTS (ENSMUSG00000040473.15) -23978 ENSMUSG00000040473.15 ENSMUSG00000040473 ENSMUST00000148193 Cfap69 protein_coding Interval_47193 chr13 77688564 77689093 + 0 NA Intergenic Intergenic 12007 ENSMUSG00000088521.1 ENSMUSG00000088521 ENSMUST00000157896 Gm26088 snoRNA Interval_13375 chr10 17542018 17542596 + 0 NA Intergenic Intergenic -15393 ENSMUSG00000111927.1 ENSMUSG00000111927 ENSMUST00000220318 Gm47770 lincRNA Interval_35112 chr12 17387489 17388183 + 0 NA intron (ENSMUSG00000061458.9, intron 13 of 20) protein_coding-intron (ENSMUSG00000061458.9, intron 13 of 20) 32444 ENSMUSG00000093037.1 ENSMUSG00000093037 ENSMUST00000175296 Mir3066 miRNA Interval_75450 chr17 66620853 66621174 + 0 NA Intergenic Intergenic 4029 ENSMUSG00000117186.1 ENSMUSG00000117186 ENSMUST00000233257 Gm46576 processed_pseudogene Interval_143565 chr7 12869853 12870379 + 0 NA Intergenic Intergenic -1533 ENSMUSG00000110320.1 ENSMUSG00000110320 ENSMUST00000210319 Gm31152 lincRNA Interval_17410 chr10 76428436 76428726 + 0 NA intron (ENSMUSG00000001151.10, intron 8 of 41) protein_coding-intron (ENSMUSG00000001151.10, intron 8 of 41) -11669 ENSMUSG00000001151.10 ENSMUSG00000001151 ENSMUST00000219701 Pcnt protein_coding Interval_147987 chr7 76373670 76373886 + 0 NA intron (ENSMUSG00000025754.11, intron 5 of 22) protein_coding-intron (ENSMUSG00000025754.11, intron 5 of 22) -127840 ENSMUSG00000098009.1 ENSMUSG00000098009 ENSMUST00000182353 Gm5597 processed_pseudogene Interval_82229 chr18 69433953 69434226 + 0 NA intron (ENSMUSG00000053477.17, intron 1 of 17) protein_coding-intron (ENSMUSG00000053477.17, intron 4 of 20) -88361 ENSMUSG00000053477.17 ENSMUSG00000053477 ENSMUST00000136019 Tcf4 protein_coding Interval_76446 chr17 80246931 80247149 + 0 NA promoter-TSS (ENSMUSG00000117440.1) antisense-promoter-TSS (ENSMUSG00000117440.1) -62 ENSMUSG00000117440.1 ENSMUSG00000117440 ENSMUST00000234217 Gm50087 antisense Interval_67566 chr16 50993823 50995297 + 0 NA Intergenic Intergenic -56570 ENSMUSG00000116706.1 ENSMUSG00000116706 ENSMUST00000231893 Gm32431 lincRNA Interval_36345 chr12 41688749 41689288 + 0 NA intron (ENSMUSG00000056899.10, intron 4 of 5) protein_coding-intron (ENSMUSG00000056899.10, intron 5 of 6) 4624 ENSMUSG00000113438.1 ENSMUSG00000113438 ENSMUST00000221651 Gm47369 processed_pseudogene Interval_136908 chr6 64136394 64136749 + 0 NA intron (ENSMUSG00000071424.10, intron 8 of 8) protein_coding-intron (ENSMUSG00000071424.10, intron 8 of 15) 44432 ENSMUSG00000107700.1 ENSMUSG00000107700 ENSMUST00000203031 Gm20144 processed_pseudogene Interval_128888 chr5 115903013 115903858 + 0 NA exon (ENSMUSG00000107263.1, exon 1 of 1) TEC-exon (ENSMUSG00000107263.1, exon 1 of 1) 1005 ENSMUSG00000107263.1 ENSMUSG00000107263 ENSMUST00000201457 Gm42471 TEC Interval_159039 chr8 89006531 89007907 + 0 NA Intergenic Intergenic -17516 ENSMUSG00000099078.1 ENSMUSG00000099078 ENSMUST00000183771 Mir8110 miRNA Interval_42690 chr13 17976069 17976305 + 0 NA intron (ENSMUSG00000113030.1, intron 4 of 4) processed_transcript-intron (ENSMUSG00000113030.1, intron 4 of 4) -14771 ENSMUSG00000114077.1 ENSMUSG00000114077 ENSMUST00000221430 Gm48776 transcribed_processed_pseudogene Interval_58442 chr15 34540903 34541969 + 0 NA Intergenic Intergenic 9722 ENSMUSG00000084607.1 ENSMUSG00000084607 ENSMUST00000122658 Gm22208 snRNA Interval_164702 chr9 40667468 40667743 + 0 NA TTS (ENSMUSG00000110992.1) lincRNA-TTS (ENSMUSG00000110992.1) 1502 ENSMUSG00000110992.1 ENSMUSG00000110992 ENSMUST00000216204 Gm35371 lincRNA Interval_24499 chr11 33759810 33760044 + 0 NA intron (ENSMUSG00000053519.17, intron 1 of 8) protein_coding-intron (ENSMUSG00000053519.17, intron 1 of 7) 54377 ENSMUSG00000087328.1 ENSMUSG00000087328 ENSMUST00000125068 Gm12120 antisense Interval_10082 chr1 165668358 165669601 + 0 NA intron (ENSMUSG00000040723.14, intron 2 of 2) protein_coding-intron (ENSMUSG00000040723.14, intron 1 of 6) -24291 ENSMUSG00000104517.1 ENSMUSG00000104517 ENSMUST00000192126 Gm18407 processed_pseudogene Interval_38348 chr12 77634576 77634771 + 0 NA Intergenic Intergenic -9664 ENSMUSG00000112003.1 ENSMUSG00000112003 ENSMUST00000219894 Gm4864 processed_pseudogene Interval_439 chr1 5272549 5273401 + 0 NA Intergenic Intergenic 4362 ENSMUSG00000104352.1 ENSMUSG00000104352 ENSMUST00000193351 Gm7182 processed_pseudogene Interval_38490 chr12 79502003 79502372 + 0 NA intron (ENSMUSG00000059060.15, intron 1 of 2) protein_coding-intron (ENSMUSG00000059060.15, intron 7 of 7) 174834 ENSMUSG00000059060.15 ENSMUSG00000059060 ENSMUST00000221257 Rad51b protein_coding Interval_145903 chr7 41573292 41574238 + 0 NA promoter-TSS (ENSMUSG00000090744.7) protein_coding-promoter-TSS (ENSMUSG00000090744.7) -20 ENSMUSG00000090341.1 ENSMUSG00000090341 ENSMUST00000166613 Gm17217 transcribed_unprocessed_pseudogene Interval_45957 chr13 59645607 59647677 + 0 NA intron (ENSMUSG00000021556.12, intron 5 of 5) protein_coding-intron (ENSMUSG00000021556.12, intron 5 of 9) 29130 ENSMUSG00000021556.12 ENSMUSG00000021556 ENSMUST00000224160 Golm1 protein_coding Interval_68868 chr16 87704575 87704882 + 0 NA intron (ENSMUSG00000025612.5, intron 1 of 2) protein_coding-intron (ENSMUSG00000025612.5, intron 1 of 4) 5724 ENSMUSG00000025612.5 ENSMUSG00000025612 ENSMUST00000156958 Bach1 protein_coding Interval_108843 chr3 132515833 132516213 + 0 NA Intergenic Intergenic 21642 ENSMUSG00000089510.1 ENSMUSG00000089510 ENSMUST00000158885 Gm25307 snRNA Interval_103458 chr3 41695521 41696292 + 0 NA intron (ENSMUSG00000059834.12, intron 4 of 6) protein_coding-intron (ENSMUSG00000059834.12, intron 9 of 20) 46499 ENSMUSG00000059834.12 ENSMUSG00000059834 ENSMUST00000191629 Sclt1 protein_coding Interval_145132 chr7 30206731 30206961 + 0 NA Intergenic Intergenic 5892 ENSMUSG00000109142.1 ENSMUSG00000109142 ENSMUST00000208540 Gm44600 processed_pseudogene Interval_81658 chr18 62943087 62943878 + 0 NA intron (ENSMUSG00000071847.13, intron 3 of 4) protein_coding-intron (ENSMUSG00000071847.13, intron 4 of 5) 20976 ENSMUSG00000071847.13 ENSMUSG00000071847 ENSMUST00000236605 Apcdd1 protein_coding Interval_125162 chr5 65016714 65017083 + 0 NA intron (ENSMUSG00000029185.14, intron 7 of 13) protein_coding-intron (ENSMUSG00000029185.14, intron 7 of 13) 44248 ENSMUSG00000106186.1 ENSMUSG00000106186 ENSMUST00000197119 Gm43627 TEC Interval_96894 chr2 129258689 129259404 + 0 NA intron (ENSMUSG00000085485.1, intron 2 of 2) antisense-intron (ENSMUSG00000085485.1, intron 2 of 2) 12670 ENSMUSG00000085485.1 ENSMUSG00000085485 ENSMUST00000141964 Gm14024 antisense Interval_136985 chr6 65564751 65564955 + 0 NA intron (ENSMUSG00000044162.12, intron 2 of 10) protein_coding-intron (ENSMUSG00000044162.12, intron 2 of 10) 39540 ENSMUSG00000044162.12 ENSMUSG00000044162 ENSMUST00000204241 Tnip3 protein_coding Interval_162203 chr8 125932906 125933806 + 0 NA intron (ENSMUSG00000031853.5, intron 4 of 9) protein_coding-intron (ENSMUSG00000031853.5, intron 4 of 9) 22906 ENSMUSG00000031853.5 ENSMUSG00000031853 ENSMUST00000034316 Map3k21 protein_coding Interval_30927 chr11 97260148 97260340 + 0 NA intron (ENSMUSG00000001441.13, intron 2 of 21) protein_coding-intron (ENSMUSG00000001441.13, intron 2 of 22) -19884 ENSMUSG00000086680.2 ENSMUSG00000086680 ENSMUST00000133160 Gm11592 antisense Interval_122883 chr5 26840949 26841904 + 0 NA intron (ENSMUSG00000061576.15, intron 2 of 2) protein_coding-intron (ENSMUSG00000061576.15, intron 1 of 25) -12921 ENSMUSG00000104733.1 ENSMUSG00000104733 ENSMUST00000196217 Gm29784 processed_pseudogene Interval_72654 chr17 31330639 31331251 + 0 NA intron (ENSMUSG00000024036.16, intron 10 of 15) protein_coding-intron (ENSMUSG00000024036.16, intron 10 of 19) -2672 ENSMUSG00000024036.16 ENSMUSG00000024036 ENSMUST00000235220 Slc37a1 protein_coding Interval_21256 chr10 127516624 127516907 + 0 NA TTS (ENSMUSG00000025403.5) protein_coding-TTS (ENSMUSG00000025403.5) 1798 ENSMUSG00000040280.10 ENSMUSG00000040280 ENSMUST00000035735 Ndufa4l2 protein_coding Interval_146116 chr7 44059041 44059803 + 0 NA Intergenic Intergenic 7132 ENSMUSG00000063177.6 ENSMUSG00000063177 ENSMUST00000079859 Klk1b27 protein_coding Interval_16585 chr10 64580449 64580712 + 0 NA intron (ENSMUSG00000060843.11, intron 11 of 17) protein_coding-intron (ENSMUSG00000060843.11, intron 10 of 16) -275836 ENSMUSG00000089003.1 ENSMUSG00000089003 ENSMUST00000158378 Gm23854 snRNA Interval_167961 chr9 74997420 74999135 + 0 NA intron (ENSMUSG00000034858.16, intron 1 of 11) protein_coding-intron (ENSMUSG00000034858.16, intron 1 of 11) 45393 ENSMUSG00000034858.16 ENSMUSG00000034858 ENSMUST00000081746 Fam214a protein_coding Interval_126412 chr5 88255518 88256491 + 0 NA Intergenic Intergenic -12915 ENSMUSG00000090302.1 ENSMUSG00000090302 ENSMUST00000169154 Gm7714 protein_coding Interval_94145 chr2 84666678 84666983 + 0 NA exon (ENSMUSG00000086598.9, exon 5 of 5) protein_coding-exon (ENSMUSG00000086598.9, exon 5 of 5) 3824 ENSMUSG00000076437.10 ENSMUSG00000076437 ENSMUST00000189988 Selenoh protein_coding Interval_134802 chr6 31660611 31661164 + 0 NA intron (ENSMUSG00000084973.2, intron 2 of 3) lincRNA-intron (ENSMUSG00000086804.8, intron 1 of 2) 5155 ENSMUSG00000084973.2 ENSMUSG00000084973 ENSMUST00000130777 Gm13848 lincRNA Interval_63563 chr15 102065362 102066749 + 0 NA Intergenic Intergenic -7809 ENSMUSG00000058655.9 ENSMUSG00000058655 ENSMUST00000229254 Eif4b protein_coding Interval_141497 chr6 128647041 128647748 + 0 NA Intergenic Intergenic 1671 ENSMUSG00000107831.1 ENSMUSG00000107831 ENSMUST00000203669 Gm44420 processed_pseudogene Interval_97962 chr2 146214540 146214974 + 0 NA TTS (ENSMUSG00000037143.17) protein_coding-TTS (ENSMUSG00000037143.17) 144 ENSMUSG00000037143.17 ENSMUSG00000037143 ENSMUST00000167179 Cfap61 protein_coding Interval_130863 chr5 132718933 132719370 + 0 NA Intergenic Intergenic -77002 ENSMUSG00000103500.1 ENSMUSG00000103500 ENSMUST00000192042 Gm38373 TEC Interval_18040 chr10 81502676 81503280 + 0 NA TTS (ENSMUSG00000034792.8) protein_coding-TTS (ENSMUSG00000034792.8) -1495 ENSMUSG00000082828.1 ENSMUSG00000082828 ENSMUST00000119187 Gm16106 processed_pseudogene Interval_127070 chr5 100063515 100064178 + 0 NA exon (ENSMUSG00000029326.13, exon 5 of 7) protein_coding-exon (ENSMUSG00000029326.13, exon 5 of 7) 1875 ENSMUSG00000029326.13 ENSMUSG00000029326 ENSMUST00000200223 Enoph1 protein_coding Interval_140325 chr6 116506749 116507137 + 0 NA intron (ENSMUSG00000053251.6, intron 1 of 1) protein_coding-intron (ENSMUSG00000053251.6, intron 1 of 1) -6614 ENSMUSG00000053251.6 ENSMUSG00000053251 ENSMUST00000220134 Olfr212 protein_coding Interval_86278 chr19 38340948 38341752 + 0 NA TTS (ENSMUSG00000118381.1) processed_pseudogene-TTS (ENSMUSG00000118381.1) 1264 ENSMUSG00000118381.1 ENSMUSG00000118381 ENSMUST00000237671 Gm50150 processed_pseudogene Interval_51170 chr14 24367713 24367912 + 0 NA intron (ENSMUSG00000118584.1, intron 3 of 3) unprocessed_pseudogene-intron (ENSMUSG00000118584.1, intron 3 of 3) 3529 ENSMUSG00000118584.1 ENSMUSG00000118584 ENSMUST00000239338 AC161374.1 unprocessed_pseudogene Interval_131372 chr5 136767968 136768715 + 0 NA intron (ENSMUSG00000004415.15, intron 3 of 3) protein_coding-intron (ENSMUSG00000004415.15, intron 3 of 12) 69968 ENSMUSG00000004415.15 ENSMUSG00000004415 ENSMUST00000140245 Col26a1 protein_coding Interval_73753 chr17 43237907 43239366 + 0 NA Intergenic Intergenic -31693 ENSMUSG00000041293.5 ENSMUSG00000041293 ENSMUST00000047399 Adgrf1 protein_coding Interval_123456 chr5 32657370 32657612 + 0 NA intron (ENSMUSG00000014932.15, intron 8 of 11) protein_coding-intron (ENSMUSG00000014932.15, intron 8 of 11) -6426 ENSMUSG00000085234.1 ENSMUSG00000085234 ENSMUST00000155976 Gm15614 antisense Interval_162967 chr9 13809774 13810414 + 0 NA TTS (ENSMUSG00000031922.12) protein_coding-TTS (ENSMUSG00000031922.12) 8815 ENSMUSG00000031922.12 ENSMUSG00000031922 ENSMUST00000124524 Cep57 protein_coding Interval_144348 chr7 24612419 24612628 + 0 NA exon (ENSMUSG00000074277.4, exon 2 of 15) protein_coding-exon (ENSMUSG00000074277.4, exon 2 of 15) 1760 ENSMUSG00000074277.4 ENSMUSG00000074277 ENSMUST00000205330 Phldb3 protein_coding Interval_70681 chr17 12991572 12992998 + 0 NA promoter-TSS (ENSMUSG00000060475.13) protein_coding-promoter-TSS (ENSMUSG00000060475.13) 1884 ENSMUSG00000060475.13 ENSMUSG00000060475 ENSMUST00000233467 Wtap protein_coding Interval_112529 chr4 42876590 42877360 + 0 NA Intergenic Intergenic -2741 ENSMUSG00000050141.13 ENSMUSG00000050141 ENSMUST00000144112 Fam205c protein_coding Interval_171986 chr9 123206677 123207267 + 0 NA intron (ENSMUSG00000035498.10, intron 1 of 4) protein_coding-intron (ENSMUSG00000035498.10, intron 1 of 8) -28866 ENSMUSG00000035498.10 ENSMUSG00000035498 ENSMUST00000140915 Cdcp1 protein_coding Interval_51856 chr14 33000573 33002352 + 0 NA intron (ENSMUSG00000041673.12, intron 2 of 3) protein_coding-intron (ENSMUSG00000041673.12, intron 2 of 3) 6197 ENSMUSG00000041673.12 ENSMUSG00000041673 ENSMUST00000123910 Lrrc18 protein_coding Interval_8884 chr1 151806923 151807716 + 0 NA intron (ENSMUSG00000043019.12, intron 16 of 20) protein_coding-intron (ENSMUSG00000043019.12, intron 16 of 19) 47636 ENSMUSG00000084557.1 ENSMUSG00000084557 ENSMUST00000122608 Gm25279 snRNA Interval_137114 chr6 67532906 67533607 + 0 NA TTS (ENSMUSG00000051397.5) protein_coding-TTS (ENSMUSG00000051397.5) 767 ENSMUSG00000105650.1 ENSMUSG00000105650 ENSMUST00000199480 Gm42889 lincRNA Interval_35615 chr12 25685587 25685790 + 0 NA Intergenic Intergenic -2113 ENSMUSG00000089441.1 ENSMUSG00000089441 ENSMUST00000158816 Gm22527 rRNA Interval_89030 chr2 14762962 14763184 + 0 NA promoter-TSS (ENSMUSG00000057914.15) protein_coding-promoter-TSS (ENSMUSG00000057914.15) 3951 ENSMUSG00000087086.7 ENSMUSG00000087086 ENSMUST00000147019 Gm13269 antisense Interval_8928 chr1 152368848 152370394 + 0 NA Intergenic Intergenic 16999 ENSMUSG00000014980.14 ENSMUSG00000014980 ENSMUST00000188105 Tsen15 protein_coding Interval_101234 chr2 179681393 179681639 + 0 NA intron (ENSMUSG00000000305.12, intron 2 of 2) protein_coding-intron (ENSMUSG00000000305.12, intron 2 of 15) -67949 ENSMUSG00000083410.1 ENSMUSG00000083410 ENSMUST00000120800 Gm14300 processed_pseudogene Interval_128102 chr5 110879453 110880380 + 0 NA promoter-TSS (ENSMUSG00000033209.17) protein_coding-promoter-TSS (ENSMUSG00000033209.17) 113 ENSMUSG00000033209.17 ENSMUSG00000033209 ENSMUST00000129017 Ttc28 protein_coding Interval_29789 chr11 86813376 86815128 + 0 NA Intergenic Intergenic -13164 ENSMUSG00000018425.18 ENSMUSG00000018425 ENSMUST00000131798 Dhx40 protein_coding Interval_167886 chr9 73528027 73528904 + 0 NA intron (ENSMUSG00000062151.13, intron 28 of 32) protein_coding-intron (ENSMUSG00000062151.13, intron 27 of 31) 25405 ENSMUSG00000103832.1 ENSMUSG00000103832 ENSMUST00000195250 Gm37611 TEC Interval_79943 chr18 36121997 36122689 + 0 NA intron (ENSMUSG00000060275.14, intron 1 of 9) protein_coding-intron (ENSMUSG00000060275.14, intron 2 of 7) 16692 ENSMUSG00000117852.1 ENSMUSG00000117852 ENSMUST00000235667 4930471G03Rik antisense Interval_125246 chr5 65626393 65626678 + 0 NA exon (ENSMUSG00000106696.1, exon 1 of 1) TEC-exon (ENSMUSG00000106696.1, exon 1 of 1) 2601 ENSMUSG00000106696.1 ENSMUSG00000106696 ENSMUST00000201770 Gm42729 TEC Interval_49640 chr13 113730276 113731444 + 0 NA Intergenic Intergenic 31268 ENSMUSG00000114962.1 ENSMUSG00000114962 ENSMUST00000225360 Gm6343 processed_pseudogene Interval_173889 chrX 107347090 107347351 + 0 NA Intergenic Intergenic 2634 ENSMUSG00000081131.1 ENSMUSG00000081131 ENSMUST00000118345 Gm14833 processed_pseudogene Interval_166051 chr9 56106717 56108156 + 0 NA intron (ENSMUSG00000032322.14, intron 1 of 13) protein_coding-intron (ENSMUSG00000032322.14, intron 1 of 14) 17460 ENSMUSG00000032322.14 ENSMUSG00000032322 ENSMUST00000132800 Pstpip1 protein_coding Interval_142558 chr6 143257164 143257360 + 0 NA intron (ENSMUSG00000072679.10, intron 4 of 4) lincRNA-intron (ENSMUSG00000072679.10, intron 3 of 3) 11369 ENSMUSG00000072679.10 ENSMUSG00000072679 ENSMUST00000160951 D6Ertd474e lincRNA Interval_98561 chr2 153240664 153242024 + 0 NA promoter-TSS (ENSMUSG00000046020.13) protein_coding-promoter-TSS (ENSMUSG00000046020.13) -197 ENSMUSG00000046020.13 ENSMUSG00000046020 ENSMUST00000152390 Pofut1 protein_coding Interval_86209 chr19 37822380 37822571 + 0 NA Intergenic Intergenic 38209 ENSMUSG00000117939.1 ENSMUSG00000117939 ENSMUST00000236017 Gm9067 processed_pseudogene Interval_162587 chr9 5412207 5413307 + 0 NA Intergenic Intergenic 67281 ENSMUSG00000025887.10 ENSMUSG00000025887 ENSMUST00000151332 Casp12 protein_coding Interval_80575 chr18 44386827 44387658 + 0 NA intron (ENSMUSG00000024472.9, intron 1 of 1) protein_coding-intron (ENSMUSG00000024472.9, intron 1 of 10) 6740 ENSMUSG00000024472.9 ENSMUSG00000024472 ENSMUST00000025350 Dcp2 protein_coding Interval_132888 chr5 148537321 148537908 + 0 NA promoter-TSS (ENSMUSG00000001687.15) protein_coding-promoter-TSS (ENSMUSG00000001687.15) 14042 ENSMUSG00000001687.15 ENSMUSG00000001687 ENSMUST00000201597 Ubl3 protein_coding Interval_11334 chr1 181015670 181018473 + 0 NA intron (ENSMUSG00000038776.13, intron 1 of 3) protein_coding-intron (ENSMUSG00000038776.13, intron 1 of 8) 5702 ENSMUSG00000103516.1 ENSMUSG00000103516 ENSMUST00000195102 Gm37431 unprocessed_pseudogene Interval_23609 chr11 23755630 23756019 + 0 NA intron (ENSMUSG00000020275.9, intron 3 of 9) protein_coding-intron (ENSMUSG00000020275.9, intron 3 of 9) 15146 ENSMUSG00000020275.9 ENSMUSG00000020275 ENSMUST00000102864 Rel protein_coding Interval_149533 chr7 99392095 99392309 + 0 NA intron (ENSMUSG00000035314.10, intron 1 of 2) protein_coding-intron (ENSMUSG00000035314.10, intron 2 of 17) -31911 ENSMUSG00000035314.10 ENSMUSG00000035314 ENSMUST00000208061 Gdpd5 protein_coding Interval_979 chr1 13619486 13619741 + 0 NA Intergenic Intergenic 18798 ENSMUSG00000025937.6 ENSMUSG00000025937 ENSMUST00000156222 Lactb2 protein_coding Interval_15882 chr10 58713690 58714922 + 0 NA intron (ENSMUSG00000091731.1, intron 1 of 1) protein_coding-intron (ENSMUSG00000091731.1, intron 1 of 1) 3904 ENSMUSG00000091731.1 ENSMUSG00000091731 ENSMUST00000169859 Gm17542 protein_coding Interval_106161 chr3 93859150 93859869 + 0 NA Intergenic Intergenic -11838 ENSMUSG00000103512.1 ENSMUSG00000103512 ENSMUST00000193039 Gm37430 unprocessed_pseudogene Interval_38701 chr12 81181892 81182988 + 0 NA intron (ENSMUSG00000021136.13, intron 11 of 11) protein_coding-intron (ENSMUSG00000021136.13, intron 11 of 12) 16289 ENSMUSG00000092673.1 ENSMUSG00000092673 ENSMUST00000174932 Mir3067 miRNA Interval_76441 chr17 80218588 80218822 + 0 NA TTS (ENSMUSG00000046196.4) protein_coding-TTS (ENSMUSG00000046196.4) -5736 ENSMUSG00000055760.12 ENSMUSG00000055760 ENSMUST00000069486 Gemin6 protein_coding Interval_1361 chr1 20974248 20975537 + 0 NA intron (ENSMUSG00000041809.5, intron 6 of 10) protein_coding-intron (ENSMUSG00000041809.5, intron 6 of 10) 23266 ENSMUSG00000041809.5 ENSMUSG00000041809 ENSMUST00000038447 Efhc1 protein_coding Interval_170823 chr9 110983734 110984311 + 0 NA TTS (ENSMUSG00000032495.8) protein_coding-TTS (ENSMUSG00000032495.8) -2179 ENSMUSG00000102060.1 ENSMUSG00000102060 ENSMUST00000185439 1700061E17Rik antisense Interval_148163 chr7 79563589 79564170 + 0 NA Intergenic Intergenic 15189 ENSMUSG00000108373.1 ENSMUSG00000108373 ENSMUST00000205591 Gm45168 lincRNA Interval_169067 chr9 91405140 91406496 + 0 NA intron (ENSMUSG00000100341.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000100341.1, intron 1 of 2) 1344 ENSMUSG00000100341.1 ENSMUSG00000100341 ENSMUST00000191272 Gm29478 lincRNA Interval_174763 chrX 166175800 166175990 + 0 NA intron (ENSMUSG00000040621.14, intron 1 of 3) protein_coding-intron (ENSMUSG00000040621.14, intron 1 of 3) -2507 ENSMUSG00000040621.14 ENSMUSG00000040621 ENSMUST00000152248 Gemin8 protein_coding Interval_91780 chr2 49503254 49504077 + 0 NA intron (ENSMUSG00000069495.12, intron 2 of 13) protein_coding-intron (ENSMUSG00000069495.12, intron 2 of 13) -25210 ENSMUSG00000069495.12 ENSMUSG00000069495 ENSMUST00000152485 Epc2 protein_coding Interval_11094 chr1 179329349 179329593 + 0 NA intron (ENSMUSG00000055067.15, intron 5 of 11) protein_coding-intron (ENSMUSG00000055067.15, intron 5 of 11) 188534 ENSMUSG00000055067.15 ENSMUSG00000055067 ENSMUST00000194237 Smyd3 protein_coding Interval_95249 chr2 105188048 105189668 + 0 NA Intergenic Intergenic 26050 ENSMUSG00000016458.15 ENSMUSG00000016458 ENSMUST00000153944 Wt1 protein_coding Interval_74592 chr17 53578526 53579041 + 0 NA intron (ENSMUSG00000000708.14, intron 1 of 17) protein_coding-intron (ENSMUSG00000000708.14, intron 1 of 17) 19880 ENSMUSG00000096517.1 ENSMUSG00000096517 ENSMUST00000180049 Gm6919 processed_pseudogene Interval_56489 chr14 119111484 119111856 + 0 NA intron (ENSMUSG00000087479.1, intron 5 of 6) processed_transcript-intron (ENSMUSG00000087479.1, intron 5 of 6) 12705 ENSMUSG00000087479.1 ENSMUSG00000087479 ENSMUST00000140488 Gm16835 processed_transcript Interval_165526 chr9 49033740 49034242 + 0 NA TTS (ENSMUSG00000032267.8) protein_coding-TTS (ENSMUSG00000032267.8) -3685 ENSMUSG00000032267.8 ENSMUSG00000032267 ENSMUST00000216657 Usp28 protein_coding Interval_37236 chr12 62144984 62145189 + 0 NA Intergenic Intergenic -16871 ENSMUSG00000113111.1 ENSMUSG00000113111 ENSMUST00000223075 Gm7754 processed_pseudogene Interval_168923 chr9 88952229 88953100 + 0 NA Intergenic Intergenic -4236 ENSMUSG00000102037.1 ENSMUSG00000102037 ENSMUST00000098485 Bcl2a1a protein_coding Interval_37416 chr12 67986120 67987085 + 0 NA Intergenic Intergenic -60343 ENSMUSG00000113182.1 ENSMUSG00000113182 ENSMUST00000222445 Gm20102 processed_pseudogene Interval_32213 chr11 106204065 106204813 + 0 NA promoter-TSS (ENSMUSG00000078622.8) protein_coding-promoter-TSS (ENSMUSG00000078622.8) 1103 ENSMUSG00000078622.8 ENSMUSG00000078622 ENSMUST00000153982 Ccdc47 protein_coding Interval_46811 chr13 71005922 71007010 + 0 NA Intergenic Intergenic 65260 ENSMUSG00000102303.1 ENSMUSG00000102303 ENSMUST00000194509 Gm38191 TEC Interval_104165 chr3 59328489 59329605 + 0 NA exon (ENSMUSG00000036334.12, exon 5 of 7) protein_coding-exon (ENSMUSG00000036334.12, exon 5 of 7) 15209 ENSMUSG00000036334.12 ENSMUSG00000036334 ENSMUST00000195983 Igsf10 protein_coding Interval_52988 chr14 52775181 52775554 + 0 NA exon (ENSMUSG00000105920.1, exon 1 of 1) processed_pseudogene-exon (ENSMUSG00000105920.1, exon 1 of 1) 498 ENSMUSG00000105920.1 ENSMUSG00000105920 ENSMUST00000197998 Gm5408 processed_pseudogene Interval_134635 chr6 30072378 30073109 + 0 NA intron (ENSMUSG00000058440.14, intron 1 of 2) protein_coding-intron (ENSMUSG00000058440.14, intron 1 of 11) -17152 ENSMUSG00000058440.14 ENSMUSG00000058440 ENSMUST00000132866 Nrf1 protein_coding Interval_153614 chr8 3793268 3794293 + 0 NA Intergenic Intergenic 9578 ENSMUSG00000088025.1 ENSMUSG00000088025 ENSMUST00000157400 Rprl3 ribozyme Interval_171659 chr9 119994177 119994621 + 0 NA intron (ENSMUSG00000052336.7, intron 2 of 2) protein_coding-intron (ENSMUSG00000052336.7, intron 2 of 2) -9638 ENSMUSG00000111369.1 ENSMUSG00000111369 ENSMUST00000216943 Gm47043 lincRNA Interval_53632 chr14 60377718 60379837 + 0 NA exon (ENSMUSG00000021986.9, exon 1 of 1) protein_coding-exon (ENSMUSG00000021986.9, exon 1 of 1) 491 ENSMUSG00000021986.9 ENSMUSG00000021986 ENSMUST00000239079 Amer2 protein_coding Interval_36744 chr12 52872002 52872662 + 0 NA intron (ENSMUSG00000061603.8, intron 1 of 11) protein_coding-intron (ENSMUSG00000061603.8, intron 2 of 13) 76496 ENSMUSG00000061603.8 ENSMUSG00000061603 ENSMUST00000219786 Akap6 protein_coding Interval_81479 chr18 61020677 61022497 + 0 NA intron (ENSMUSG00000024619.8, intron 1 of 2) protein_coding-intron (ENSMUSG00000024619.8, intron 1 of 2) -7381 ENSMUSG00000052026.8 ENSMUSG00000052026 ENSMUST00000236893 Slc6a7 protein_coding Interval_109586 chr3 144731179 144731783 + 0 NA intron (ENSMUSG00000056025.12, intron 13 of 13) protein_coding-intron (ENSMUSG00000056025.12, intron 12 of 12) 3597 ENSMUSG00000106089.1 ENSMUSG00000106089 ENSMUST00000200672 Gm9419 processed_pseudogene Interval_21095 chr10 126239349 126239539 + 0 NA Intergenic Intergenic -15673 ENSMUSG00000112387.1 ENSMUSG00000112387 ENSMUST00000217671 1700021G15Rik lincRNA Interval_48571 chr13 100397252 100398658 + 0 NA Intergenic Intergenic 5223 ENSMUSG00000112978.1 ENSMUSG00000112978 ENSMUST00000220831 Gm18601 processed_pseudogene Interval_11462 chr1 182018531 182021029 + 0 NA promoter-TSS (ENSMUSG00000022995.16) protein_coding-promoter-TSS (ENSMUSG00000022995.16) -12094 ENSMUSG00000102760.1 ENSMUSG00000102760 ENSMUST00000191734 Gm37258 TEC Interval_25154 chr11 44599756 44599936 + 0 NA Intergenic Intergenic 13529 ENSMUSG00000086501.1 ENSMUSG00000086501 ENSMUST00000128652 4930597A21Rik lincRNA Interval_38890 chr12 83641598 83641836 + 0 NA promoter-TSS (ENSMUSG00000010608.15) protein_coding-promoter-TSS (ENSMUSG00000010608.15) -7884 ENSMUSG00000099708.1 ENSMUSG00000099708 ENSMUST00000183323 Gm29361 antisense Interval_78065 chr18 7626235 7627225 + 0 NA promoter-TSS (ENSMUSG00000057440.8) protein_coding-promoter-TSS (ENSMUSG00000057440.8) 124 ENSMUSG00000057440.8 ENSMUSG00000057440 ENSMUST00000233992 Mpp7 protein_coding Interval_173485 chrX 95253688 95254015 + 0 NA promoter-TSS (ENSMUSG00000080298.2) processed_pseudogene-promoter-TSS (ENSMUSG00000080298.2) 47 ENSMUSG00000080298.2 ENSMUSG00000080298 ENSMUST00000116640 Gm14807 processed_pseudogene Interval_14493 chr10 34316361 34317465 + 0 NA intron (ENSMUSG00000039480.14, intron 7 of 10) protein_coding-intron (ENSMUSG00000039480.14, intron 8 of 11) 17657 ENSMUSG00000039485.8 ENSMUSG00000039485 ENSMUST00000213791 Tspyl4 protein_coding Interval_135454 chr6 39415790 39416188 + 0 NA intron (ENSMUSG00000029922.15, intron 1 of 2) protein_coding-intron (ENSMUSG00000029922.15, intron 1 of 7) -3898 ENSMUSG00000068601.2 ENSMUSG00000068601 ENSMUST00000090237 Gm10244 antisense Interval_75078 chr17 63056338 63056722 + 0 NA TTS (ENSMUSG00000023965.13) protein_coding-TTS (ENSMUSG00000023965.13) 40470 ENSMUSG00000089586.1 ENSMUSG00000089586 ENSMUST00000158961 Gm25348 rRNA Interval_163286 chr9 20586638 20586850 + 0 NA intron (ENSMUSG00000058192.16, intron 1 of 2) protein_coding-intron (ENSMUSG00000058192.16, intron 1 of 5) 5212 ENSMUSG00000058192.16 ENSMUSG00000058192 ENSMUST00000060063 Zfp846 protein_coding Interval_108081 chr3 121410898 121411102 + 0 NA Intergenic Intergenic 16574 ENSMUSG00000105813.1 ENSMUSG00000105813 ENSMUST00000197338 Gm42928 TEC Interval_97785 chr2 144046097 144047270 + 0 NA intron (ENSMUSG00000037307.11, intron 1 of 2) protein_coding-intron (ENSMUSG00000037307.11, intron 1 of 3) 13581 ENSMUSG00000037307.11 ENSMUSG00000037307 ENSMUST00000110032 Banf2 protein_coding Interval_97080 chr2 131087247 131088083 + 0 NA promoter-TSS (ENSMUSG00000027322.11) protein_coding-promoter-TSS (ENSMUSG00000027322.11) -900 ENSMUSG00000027322.11 ENSMUSG00000027322 ENSMUST00000110226 Siglec1 protein_coding Interval_134329 chr6 25276423 25276850 + 0 NA Intergenic Intergenic -76585 ENSMUSG00000089442.1 ENSMUSG00000089442 ENSMUST00000158817 Gm22529 snoRNA Interval_65190 chr16 20439222 20440188 + 0 NA intron (ENSMUSG00000093649.1, intron 2 of 4) unprocessed_pseudogene-intron (ENSMUSG00000093649.1, intron 2 of 4) 3667 ENSMUSG00000093649.1 ENSMUSG00000093649 ENSMUST00000177106 Gm20614 unprocessed_pseudogene Interval_7406 chr1 131104097 131104538 + 0 NA Intergenic Intergenic -1572 ENSMUSG00000089256.1 ENSMUSG00000089256 ENSMUST00000158631 Gm25717 misc_RNA Interval_24739 chr11 36489928 36490690 + 0 NA intron (ENSMUSG00000049336.16, intron 2 of 28) protein_coding-intron (ENSMUSG00000049336.16, intron 2 of 28) 212268 ENSMUSG00000086375.1 ENSMUSG00000086375 ENSMUST00000123278 Gm12127 antisense Interval_59422 chr15 52967497 52968599 + 0 NA Intergenic Intergenic 139820 ENSMUSG00000061731.9 ENSMUSG00000061731 ENSMUST00000140798 Ext1 protein_coding Interval_78935 chr18 22176407 22177045 + 0 NA Intergenic Intergenic -5284 ENSMUSG00000024306.13 ENSMUSG00000024306 ENSMUST00000234661 Ccdc178 protein_coding Interval_54426 chr14 69379884 69380240 + 0 NA intron (ENSMUSG00000093954.8, intron 3 of 3) protein_coding-intron (ENSMUSG00000093954.8, intron 2 of 4) -10792 ENSMUSG00000094526.1 ENSMUSG00000094526 ENSMUST00000111062 Gm21451 unprocessed_pseudogene Interval_60140 chr15 66239424 66239991 + 0 NA intron (ENSMUSG00000056258.9, intron 1 of 14) protein_coding-intron (ENSMUSG00000056258.9, intron 1 of 14) 46344 ENSMUSG00000056258.9 ENSMUSG00000056258 ENSMUST00000183633 Kcnq3 protein_coding Interval_76480 chr17 80482620 80483573 + 0 NA Intergenic Intergenic -2643 ENSMUSG00000024241.7 ENSMUSG00000024241 ENSMUST00000234841 Sos1 protein_coding Interval_97060 chr2 130876885 130877734 + 0 NA intron (ENSMUSG00000085566.1, intron 1 of 1) processed_transcript-intron (ENSMUSG00000085566.1, intron 1 of 1) -3557 ENSMUSG00000080989.1 ENSMUSG00000080989 ENSMUST00000121864 Gm14048 processed_pseudogene Interval_29876 chr11 87470794 87472284 + 0 NA TTS (ENSMUSG00000098925.1) snoRNA-TTS (ENSMUSG00000098925.1) 171 ENSMUSG00000105115.1 ENSMUSG00000105115 ENSMUST00000196353 Rnu3b2 snoRNA Interval_47630 chr13 90401892 90402727 + 0 NA intron (ENSMUSG00000114204.1, intron 2 of 3) lincRNA-intron (ENSMUSG00000114204.1, intron 2 of 3) -15752 ENSMUSG00000102793.1 ENSMUSG00000102793 ENSMUST00000192337 Gm37708 TEC Interval_94942 chr2 102049932 102050164 + 0 NA intron (ENSMUSG00000085417.1, intron 1 of 4) protein_coding-intron (ENSMUSG00000048058.17, intron 4 of 5) -7539 ENSMUSG00000085110.1 ENSMUSG00000085110 ENSMUST00000146134 Gm13920 antisense Interval_26137 chr11 54695691 54696219 + 0 NA intron (ENSMUSG00000037533.20, intron 17 of 17) protein_coding-intron (ENSMUSG00000037533.20, intron 28 of 28) -32722 ENSMUSG00000086039.1 ENSMUSG00000086039 ENSMUST00000147847 Gm12227 antisense Interval_37641 chr12 70741561 70741862 + 0 NA intron (ENSMUSG00000113900.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000113900.1, intron 1 of 2) -59861 ENSMUSG00000112950.1 ENSMUSG00000112950 ENSMUST00000222630 Gm32369 lincRNA Interval_126896 chr5 96847556 96848694 + 0 NA Intergenic Intergenic -1380 ENSMUSG00000104955.1 ENSMUSG00000104955 ENSMUST00000198159 1700016F12Rik lincRNA Interval_59964 chr15 62269465 62269681 + 0 NA intron (ENSMUSG00000097039.8, intron 5 of 9) lincRNA-intron (ENSMUSG00000097039.8, intron 5 of 9) -50241 ENSMUSG00000101167.1 ENSMUSG00000101167 ENSMUST00000151919 Macroh2a3 processed_pseudogene Interval_151455 chr7 122670583 122671517 + 0 NA promoter-TSS (ENSMUSG00000066189.9) protein_coding-promoter-TSS (ENSMUSG00000066189.9) -341 ENSMUSG00000066189.9 ENSMUSG00000066189 ENSMUST00000182095 Cacng3 protein_coding Interval_23810 chr11 26467291 26467748 + 0 NA promoter-TSS (ENSMUSG00000004018.9) protein_coding-promoter-TSS (ENSMUSG00000004018.9) 58312 ENSMUSG00000081811.1 ENSMUSG00000081811 ENSMUST00000118404 Gm12713 processed_pseudogene Interval_56063 chr14 105248653 105249370 + 0 NA promoter-TSS (ENSMUSG00000094275.1) snRNA-promoter-TSS (ENSMUSG00000094275.1) -999 ENSMUSG00000094275.1 ENSMUSG00000094275 ENSMUST00000177655 Gm22290 snRNA Interval_124305 chr5 43802603 43803133 + 0 NA intron (ENSMUSG00000039753.16, intron 1 of 10) protein_coding-intron (ENSMUSG00000039753.16, intron 1 of 10) 5875 ENSMUSG00000104701.1 ENSMUSG00000104701 ENSMUST00000199304 Gm42555 lincRNA Interval_87884 chr19 56874042 56875132 + 0 NA intron (ENSMUSG00000025082.8, intron 1 of 13) protein_coding-intron (ENSMUSG00000025082.8, intron 1 of 13) 338 ENSMUSG00000025082.8 ENSMUSG00000025082 ENSMUST00000026068 Vwa2 protein_coding Interval_132270 chr5 143800943 143801223 + 0 NA Intergenic Intergenic -16864 ENSMUSG00000029613.15 ENSMUSG00000029613 ENSMUST00000154767 Eif2ak1 protein_coding Interval_95560 chr2 112274665 112274955 + 0 NA intron (ENSMUSG00000096764.1, intron 1 of 27) protein_coding-intron (ENSMUSG00000027130.15, intron 1 of 24) 8496 ENSMUSG00000096764.1 ENSMUSG00000096764 ENSMUST00000141047 Gm21985 protein_coding Interval_120501 chr4 149031458 149031736 + 0 NA intron (ENSMUSG00000028975.16, intron 3 of 4) protein_coding-intron (ENSMUSG00000028975.16, intron 3 of 8) -64786 ENSMUSG00000081086.1 ENSMUSG00000081086 ENSMUST00000118516 Gm9506 processed_pseudogene Interval_61544 chr15 82252409 82256359 + 0 NA intron (ENSMUSG00000068099.5, intron 1 of 1) protein_coding-intron (ENSMUSG00000068099.5, intron 1 of 1) -1639 ENSMUSG00000068099.5 ENSMUSG00000068099 ENSMUST00000143238 1500009C09Rik protein_coding Interval_80754 chr18 46845665 46845994 + 0 NA Intergenic Intergenic -4210 ENSMUSG00000024481.5 ENSMUSG00000024481 ENSMUST00000234519 Lvrn protein_coding Interval_159043 chr8 89028375 89028785 + 0 NA exon (ENSMUSG00000031665.7, exon 4 of 4) protein_coding-exon (ENSMUSG00000031665.7, exon 4 of 4) 3845 ENSMUSG00000099078.1 ENSMUSG00000099078 ENSMUST00000183771 Mir8110 miRNA Interval_85871 chr19 32584346 32584616 + 0 NA Intergenic Intergenic -35524 ENSMUSG00000024899.7 ENSMUSG00000024899 ENSMUST00000025833 Papss2 protein_coding Interval_84375 chr19 10456541 10458104 + 0 NA exon (ENSMUSG00000090291.3, exon 1 of 1) protein_coding-exon (ENSMUSG00000090291.3, exon 1 of 1) 151 ENSMUSG00000090291.3 ENSMUSG00000090291 ENSMUST00000171400 Lrrc10b protein_coding Interval_99516 chr2 162907837 162908636 + 0 NA exon (ENSMUSG00000082514.1, exon 1 of 1) processed_pseudogene-exon (ENSMUSG00000082514.1, exon 1 of 1) 312 ENSMUSG00000082514.1 ENSMUSG00000082514 ENSMUST00000122376 Gm11452 processed_pseudogene Interval_137539 chr6 72981416 72981848 + 0 NA TTS (ENSMUSG00000107661.1) processed_pseudogene-TTS (ENSMUSG00000107661.1) 1430 ENSMUSG00000107661.1 ENSMUSG00000107661 ENSMUST00000203834 Gm18402 processed_pseudogene Interval_112218 chr4 36315235 36315476 + 0 NA intron (ENSMUSG00000045083.14, intron 3 of 6) protein_coding-intron (ENSMUSG00000045083.14, intron 3 of 7) -128715 ENSMUSG00000084352.1 ENSMUSG00000084352 ENSMUST00000117809 Gm12370 processed_pseudogene Interval_63291 chr15 100126664 100127352 + 0 NA intron (ENSMUSG00000023026.16, intron 2 of 37) protein_coding-intron (ENSMUSG00000023026.16, intron 2 of 37) -18847 ENSMUSG00000116311.1 ENSMUSG00000116311 ENSMUST00000229204 4930478M13Rik antisense Interval_90976 chr2 33876494 33877345 + 0 NA intron (ENSMUSG00000038740.9, intron 1 of 2) protein_coding-intron (ENSMUSG00000038740.9, intron 1 of 9) 63962 ENSMUSG00000089596.1 ENSMUSG00000089596 ENSMUST00000158971 Nron misc_RNA Interval_27394 chr11 67268685 67268982 + 0 NA Intergenic Intergenic -11158 ENSMUSG00000055775.16 ENSMUSG00000055775 ENSMUST00000139052 Myh8 protein_coding Interval_160724 chr8 111823805 111825884 + 0 NA intron (ENSMUSG00000031954.6, intron 5 of 6) protein_coding-intron (ENSMUSG00000031954.6, intron 5 of 6) 29447 ENSMUSG00000031954.6 ENSMUSG00000031954 ENSMUST00000034432 Cfdp1 protein_coding Interval_166656 chr9 61645546 61646358 + 0 NA Intergenic Intergenic -117132 ENSMUSG00000111739.1 ENSMUSG00000111739 ENSMUST00000213572 Gm47241 processed_pseudogene Interval_25437 chr11 48444736 48446211 + 0 NA Intergenic Intergenic 107051 ENSMUSG00000083954.1 ENSMUSG00000083954 ENSMUST00000118344 Gm12179 processed_pseudogene Interval_9028 chr1 153174893 153175205 + 0 NA intron (ENSMUSG00000026479.13, intron 2 of 3) protein_coding-intron (ENSMUSG00000026479.13, intron 2 of 23) -47815 ENSMUSG00000026479.13 ENSMUSG00000026479 ENSMUST00000188831 Lamc2 protein_coding Interval_70114 chr17 5418424 5419394 + 0 NA promoter-TSS (ENSMUSG00000101959.1) protein_coding-promoter-TSS (ENSMUSG00000101959.1) -142 ENSMUSG00000101959.1 ENSMUSG00000101959 ENSMUST00000189788 Ldhal6b protein_coding Interval_161143 chr8 117772108 117773038 + 0 NA Intergenic Intergenic 20644 ENSMUSG00000031843.2 ENSMUSG00000031843 ENSMUST00000211818 Mphosph6 protein_coding Interval_144887 chr7 28766139 28767218 + 0 NA promoter-TSS (ENSMUSG00000030595.15) protein_coding-promoter-TSS (ENSMUSG00000030595.15) 834 ENSMUSG00000030595.15 ENSMUSG00000030595 ENSMUST00000137121 Nfkbib protein_coding Interval_45851 chr13 58542917 58544503 + 0 NA Intergenic Intergenic -2318 ENSMUSG00000114234.1 ENSMUSG00000114234 ENSMUST00000223882 Gm3131 processed_pseudogene Interval_110202 chr3 154211206 154211395 + 0 NA intron (ENSMUSG00000028360.10, intron 3 of 21) protein_coding-intron (ENSMUSG00000028360.10, intron 3 of 21) 38200 ENSMUSG00000106500.1 ENSMUSG00000106500 ENSMUST00000200319 Gm42540 TEC Interval_130915 chr5 134027776 134028677 + 0 NA Intergenic Intergenic 63225 ENSMUSG00000106800.1 ENSMUSG00000106800 ENSMUST00000202497 1700030N18Rik TEC Interval_157075 chr8 64979064 64979900 + 0 NA Intergenic Intergenic 8349 ENSMUSG00000071089.3 ENSMUSG00000071089 ENSMUST00000210982 Trim75 protein_coding Interval_150590 chr7 112684874 112685554 + 0 NA intron (ENSMUSG00000055320.18, intron 1 of 13) protein_coding-intron (ENSMUSG00000055320.18, intron 1 of 13) -5133 ENSMUSG00000085945.3 ENSMUSG00000085945 ENSMUST00000211302 2310014F06Rik bidirectional_promoter_lncRNA Interval_160935 chr8 115453387 115454754 + 0 NA Intergenic Intergenic -131322 ENSMUSG00000110592.1 ENSMUSG00000110592 ENSMUST00000212830 4930488N15Rik lincRNA Interval_88432 chr2 5025192 5025858 + 0 NA intron (ENSMUSG00000026672.11, intron 7 of 8) protein_coding-intron (ENSMUSG00000026672.11, intron 12 of 14) 11672 ENSMUSG00000026672.11 ENSMUSG00000026672 ENSMUST00000143809 Optn protein_coding Interval_102419 chr3 25143551 25144739 + 0 NA promoter-TSS (ENSMUSG00000102876.1) TEC-promoter-TSS (ENSMUSG00000102876.1) 77 ENSMUSG00000102876.1 ENSMUSG00000102876 ENSMUST00000194368 Gm37136 TEC Interval_114719 chr4 84292277 84292533 + 0 NA promoter-TSS (ENSMUSG00000028487.18) protein_coding-promoter-TSS (ENSMUSG00000028487.18) -475 ENSMUSG00000028487.18 ENSMUSG00000028487 ENSMUST00000176370 Bnc2 protein_coding Interval_74514 chr17 52676968 52677201 + 0 NA intron (ENSMUSG00000035580.10, intron 1 of 15) protein_coding-intron (ENSMUSG00000035580.10, intron 1 of 15) -74424 ENSMUSG00000098552.1 ENSMUSG00000098552 ENSMUST00000183438 Gm27217 antisense Interval_141266 chr6 126704568 126704886 + 0 NA Intergenic Intergenic -13957 ENSMUSG00000097596.1 ENSMUSG00000097596 ENSMUST00000181126 Gm26673 antisense Interval_35766 chr12 29109977 29110610 + 0 NA Intergenic Intergenic -3556 ENSMUSG00000113544.1 ENSMUSG00000113544 ENSMUST00000222186 4833405L11Rik lincRNA Interval_163157 chr9 15977360 15978014 + 0 NA intron (ENSMUSG00000074505.6, intron 13 of 25) protein_coding-intron (ENSMUSG00000074505.6, intron 12 of 24) -103131 ENSMUSG00000050901.6 ENSMUSG00000050901 ENSMUST00000057920 Mtnr1b protein_coding Interval_18281 chr10 84549249 84549594 + 0 NA exon (ENSMUSG00000097076.1, exon 3 of 4) lincRNA-exon (ENSMUSG00000097076.1, exon 3 of 4) 3917 ENSMUSG00000097076.1 ENSMUSG00000097076 ENSMUST00000181466 Platr7 lincRNA Interval_109043 chr3 135422622 135424024 + 0 NA promoter-TSS (ENSMUSG00000028165.9) protein_coding-promoter-TSS (ENSMUSG00000028165.9) -244 ENSMUSG00000028165.9 ENSMUSG00000028165 ENSMUST00000198784 Cisd2 protein_coding Interval_148912 chr7 89997226 89999163 + 0 NA intron (ENSMUSG00000097585.2, intron 5 of 8) processed_transcript-intron (ENSMUSG00000097585.2, intron 5 of 8) -17218 ENSMUSG00000030619.10 ENSMUSG00000030619 ENSMUST00000157001 Eed protein_coding Interval_71296 chr17 21996330 21996796 + 0 NA intron (ENSMUSG00000053347.15, intron 3 of 5) protein_coding-intron (ENSMUSG00000053347.15, intron 3 of 5) 11036 ENSMUSG00000040775.6 ENSMUSG00000040775 ENSMUST00000075018 Gm9772 processed_pseudogene Interval_86493 chr19 41086297 41087102 + 0 NA intron (ENSMUSG00000025013.15, intron 19 of 20) protein_coding-intron (ENSMUSG00000025013.15, intron 19 of 20) -18576 ENSMUSG00000050121.9 ENSMUSG00000050121 ENSMUST00000087176 Opalin protein_coding Interval_58119 chr15 28076511 28076733 + 0 NA intron (ENSMUSG00000115773.1, intron 1 of 5) lincRNA-intron (ENSMUSG00000115773.1, intron 1 of 5) 35613 ENSMUSG00000115058.1 ENSMUSG00000115058 ENSMUST00000227963 Gm19883 processed_pseudogene Interval_85716 chr19 30006141 30007059 + 0 NA TTS (ENSMUSG00000024815.5) protein_coding-TTS (ENSMUSG00000024815.5) 2810 ENSMUSG00000024815.5 ENSMUSG00000024815 ENSMUST00000025727 Trpd52l3 protein_coding Interval_11122 chr1 179506609 179507476 + 0 NA intron (ENSMUSG00000055067.15, intron 1 of 11) protein_coding-intron (ENSMUSG00000055067.15, intron 1 of 5) 10963 ENSMUSG00000055067.15 ENSMUSG00000055067 ENSMUST00000194237 Smyd3 protein_coding Interval_134454 chr6 28877303 28878436 + 0 NA TTS (ENSMUSG00000001424.14) protein_coding-TTS (ENSMUSG00000001424.14) -47524 ENSMUSG00000049939.6 ENSMUSG00000049939 ENSMUST00000062304 Lrrc4 protein_coding Interval_148833 chr7 89168204 89169078 + 0 NA intron (ENSMUSG00000039428.11, intron 4 of 5) protein_coding-intron (ENSMUSG00000039428.11, intron 6 of 14) -23144 ENSMUSG00000039428.11 ENSMUSG00000039428 ENSMUST00000137723 Tmem135 protein_coding Interval_29334 chr11 83239707 83240244 + 0 NA intron (ENSMUSG00000083161.2, intron 2 of 4) transcribed_unprocessed_pseudogene-intron (ENSMUSG00000083161.2, intron 2 of 4) 15521 ENSMUSG00000083161.2 ENSMUSG00000083161 ENSMUST00000215482 Gm11427 transcribed_unprocessed_pseudogene Interval_43406 chr13 30185180 30186833 + 0 NA intron (ENSMUSG00000038732.15, intron 1 of 6) protein_coding-intron (ENSMUSG00000038732.15, intron 1 of 12) 4290 ENSMUSG00000082648.1 ENSMUSG00000082648 ENSMUST00000119279 Gm11366 processed_pseudogene Interval_155813 chr8 39059907 39060371 + 0 NA intron (ENSMUSG00000039530.17, intron 2 of 7) protein_coding-intron (ENSMUSG00000039530.17, intron 2 of 9) 54231 ENSMUSG00000039530.17 ENSMUSG00000039530 ENSMUST00000210890 Tusc3 protein_coding Interval_21721 chr11 3937727 3938118 + 0 NA exon (ENSMUSG00000034493.1, exon 2 of 2) protein_coding-exon (ENSMUSG00000034493.1, exon 2 of 2) -5763 ENSMUSG00000020432.12 ENSMUSG00000020432 ENSMUST00000109993 Tcn2 protein_coding Interval_19663 chr10 107485508 107485867 + 0 NA exon (ENSMUSG00000000435.1, exon 1 of 3) protein_coding-exon (ENSMUSG00000000435.1, exon 1 of 3) 447 ENSMUSG00000000435.1 ENSMUSG00000000435 ENSMUST00000000445 Myf5 protein_coding Interval_49643 chr13 113745190 113746187 + 0 NA Intergenic Intergenic 16440 ENSMUSG00000114962.1 ENSMUSG00000114962 ENSMUST00000225360 Gm6343 processed_pseudogene Interval_129550 chr5 120861337 120861671 + 0 NA promoter-TSS (ENSMUSG00000001168.16) protein_coding-promoter-TSS (ENSMUSG00000001168.16) 66 ENSMUSG00000001168.16 ENSMUSG00000001168 ENSMUST00000171820 Oas1h protein_coding Interval_155600 chr8 34990572 34991833 + 0 NA Intergenic Intergenic -11328 ENSMUSG00000109717.1 ENSMUSG00000109717 ENSMUST00000209512 Gm34368 lincRNA Interval_144015 chr7 18982730 18983217 + 0 NA Intergenic Intergenic -4427 ENSMUSG00000051965.8 ENSMUSG00000051965 ENSMUST00000063563 Nanos2 protein_coding Interval_170482 chr9 108254340 108256156 + 0 NA intron (ENSMUSG00000039952.15, intron 1 of 3) protein_coding-intron (ENSMUSG00000039952.15, intron 1 of 3) 8503 ENSMUSG00000039952.15 ENSMUSG00000039952 ENSMUST00000193701 Dag1 protein_coding Interval_140234 chr6 115711323 115711793 + 0 NA Intergenic Intergenic 12274 ENSMUSG00000088358.1 ENSMUSG00000088358 ENSMUST00000157733 Gm24008 snoRNA Interval_112991 chr4 46656911 46657591 + 0 NA Intergenic Intergenic -7042 ENSMUSG00000039813.14 ENSMUSG00000039813 ENSMUST00000107750 Tbc1d2 protein_coding Interval_15081 chr10 42437672 42438068 + 0 NA intron (ENSMUSG00000038302.14, intron 1 of 10) protein_coding-intron (ENSMUSG00000038302.14, intron 3 of 12) 1981 ENSMUSG00000083429.2 ENSMUSG00000083429 ENSMUST00000117283 Gm15198 processed_pseudogene Interval_49625 chr13 113632100 113632810 + 0 NA Intergenic Intergenic -18441 ENSMUSG00000042364.11 ENSMUSG00000042364 ENSMUST00000224883 Snx18 protein_coding Interval_47886 chr13 94165631 94165856 + 0 NA intron (ENSMUSG00000045312.12, intron 1 of 1) protein_coding-intron (ENSMUSG00000045312.12, intron 2 of 3) -25626 ENSMUSG00000087319.1 ENSMUSG00000087319 ENSMUST00000134284 Gm15907 lincRNA Interval_113112 chr4 48421328 48422424 + 0 NA exon (ENSMUSG00000028344.12, exon 14 of 17) protein_coding-exon (ENSMUSG00000028344.12, exon 14 of 17) 51546 ENSMUSG00000028345.15 ENSMUSG00000028345 ENSMUST00000132911 Tex10 protein_coding Interval_123387 chr5 32102471 32102709 + 0 NA Intergenic Intergenic 30581 ENSMUSG00000102759.1 ENSMUSG00000102759 ENSMUST00000195772 Gm10463 TEC Interval_131407 chr5 136972469 136972747 + 0 NA intron (ENSMUSG00000001739.14, intron 3 of 5) protein_coding-intron (ENSMUSG00000001739.14, intron 2 of 4) -1346 ENSMUSG00000001739.14 ENSMUSG00000001739 ENSMUST00000128391 Cldn15 protein_coding Interval_115650 chr4 101621353 101621591 + 0 NA intron (ENSMUSG00000028528.17, intron 12 of 18) protein_coding-intron (ENSMUSG00000028528.17, intron 12 of 18) -26321 ENSMUSG00000035212.14 ENSMUSG00000035212 ENSMUST00000106927 Leprot protein_coding Interval_77152 chr17 86932356 86933371 + 0 NA intron (ENSMUSG00000117457.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000117457.1, intron 1 of 2) 3890 ENSMUSG00000117457.1 ENSMUSG00000117457 ENSMUST00000234807 Gm50011 lincRNA Interval_100651 chr2 170777185 170777908 + 0 NA intron (ENSMUSG00000027560.4, intron 1 of 7) protein_coding-intron (ENSMUSG00000027560.4, intron 1 of 7) 45739 ENSMUSG00000027560.4 ENSMUSG00000027560 ENSMUST00000029075 Dok5 protein_coding Interval_152780 chr7 137471358 137471971 + 0 NA Intergenic Intergenic 33999 ENSMUSG00000031068.8 ENSMUSG00000031068 ENSMUST00000211598 Glrx3 protein_coding Interval_118635 chr4 132913508 132914334 + 0 NA intron (ENSMUSG00000028878.11, intron 4 of 4) protein_coding-intron (ENSMUSG00000028878.11, intron 4 of 8) 6988 ENSMUSG00000028878.11 ENSMUSG00000028878 ENSMUST00000148667 Fam76a protein_coding Interval_162163 chr8 125639005 125639340 + 0 NA Intergenic Intergenic -30646 ENSMUSG00000050930.5 ENSMUSG00000050930 ENSMUST00000053078 Map10 protein_coding Interval_32664 chr11 109496363 109498856 + 0 NA intron (ENSMUSG00000020604.13, intron 2 of 11) protein_coding-intron (ENSMUSG00000020604.13, intron 4 of 13) 2215 ENSMUSG00000088106.1 ENSMUSG00000088106 ENSMUST00000157481 Gm22378 snRNA Interval_98058 chr2 147298534 147299728 + 0 NA intron (ENSMUSG00000086509.2, intron 3 of 5) antisense-intron (ENSMUSG00000086509.2, intron 3 of 5) -8050 ENSMUSG00000098763.1 ENSMUSG00000098763 ENSMUST00000184407 Nkx2-2os misc_RNA Interval_103628 chr3 51293897 51294778 + 0 NA intron (ENSMUSG00000037174.18, intron 3 of 9) protein_coding-intron (ENSMUSG00000037174.18, intron 4 of 9) -2842 ENSMUSG00000077420.1 ENSMUSG00000077420 ENSMUST00000104232 Gm24282 miRNA Interval_17058 chr10 70932215 70933260 + 0 NA intron (ENSMUSG00000014329.14, intron 18 of 20) protein_coding-intron (ENSMUSG00000014329.14, intron 18 of 21) 15752 ENSMUSG00000014329.14 ENSMUSG00000014329 ENSMUST00000144740 Bicc1 protein_coding Interval_150295 chr7 109395039 109395318 + 0 NA intron (ENSMUSG00000031027.15, intron 1 of 13) protein_coding-intron (ENSMUSG00000031027.15, intron 1 of 12) -6303 ENSMUSG00000081370.1 ENSMUSG00000081370 ENSMUST00000120160 Gm9105 processed_pseudogene Interval_52125 chr14 36892899 36893571 + 0 NA intron (ENSMUSG00000058690.14, intron 4 of 6) protein_coding-intron (ENSMUSG00000058690.14, intron 9 of 9) 15946 ENSMUSG00000058690.14 ENSMUSG00000058690 ENSMUST00000182635 Ccser2 protein_coding Interval_115071 chr4 89234567 89234756 + 0 NA Intergenic Intergenic 17797 ENSMUSG00000107513.1 ENSMUSG00000107513 ENSMUST00000203590 Tgif2-ps1 processed_pseudogene Interval_85390 chr19 25444812 25446005 + 0 NA Intergenic Intergenic 8655 ENSMUSG00000064843.1 ENSMUSG00000064843 ENSMUST00000082909 Gm26207 snRNA Interval_130160 chr5 124614641 124615047 + 0 NA intron (ENSMUSG00000029386.15, intron 9 of 17) protein_coding-intron (ENSMUSG00000029386.15, intron 9 of 18) -13732 ENSMUSG00000038023.12 ENSMUSG00000038023 ENSMUST00000197161 Atp6v0a2 protein_coding Interval_136933 chr6 64694436 64695414 + 0 NA intron (ENSMUSG00000071424.10, intron 1 of 1) protein_coding-intron (ENSMUSG00000071424.10, intron 1 of 1) 31737 ENSMUSG00000071424.10 ENSMUSG00000071424 ENSMUST00000210324 Grid2 protein_coding Interval_124568 chr5 51170620 51170862 + 0 NA Intergenic Intergenic 52933 ENSMUSG00000104635.1 ENSMUSG00000104635 ENSMUST00000199039 Gm44377 miRNA Interval_62880 chr15 97674480 97674774 + 0 NA TTS (ENSMUSG00000022466.6) protein_coding-TTS (ENSMUSG00000022466.6) 5726 ENSMUSG00000022466.6 ENSMUSG00000022466 ENSMUST00000229008 Rpap3 protein_coding Interval_24125 chr11 30591910 30592975 + 0 NA intron (ENSMUSG00000060923.5, intron 3 of 3) protein_coding-intron (ENSMUSG00000060923.5, intron 3 of 3) -17988 ENSMUSG00000081887.1 ENSMUSG00000081887 ENSMUST00000121523 Gm12097 processed_pseudogene Interval_42793 chr13 19597135 19598160 + 0 NA intron (ENSMUSG00000002808.7, intron 1 of 2) protein_coding-intron (ENSMUSG00000002808.7, intron 1 of 2) 22141 ENSMUSG00000002808.7 ENSMUSG00000002808 ENSMUST00000220755 Epdr1 protein_coding Interval_87127 chr19 46337933 46339113 + 0 NA promoter-TSS (ENSMUSG00000036748.16) protein_coding-promoter-TSS (ENSMUSG00000036748.16) -4239 ENSMUSG00000070127.2 ENSMUSG00000070127 ENSMUST00000093619 Mir146b miRNA Interval_111280 chr4 16990878 16991646 + 0 NA Intergenic Intergenic 42398 ENSMUSG00000082994.1 ENSMUSG00000082994 ENSMUST00000121207 Gm11848 processed_pseudogene Interval_49023 chr13 106995246 106995549 + 0 NA intron (ENSMUSG00000021693.20, intron 1 of 20) protein_coding-intron (ENSMUSG00000021693.20, intron 1 of 19) -4930 ENSMUSG00000077261.1 ENSMUSG00000077261 ENSMUST00000104073 Gm24431 snoRNA Interval_134609 chr6 29957050 29957307 + 0 NA exon (ENSMUSG00000039629.14, exon 21 of 21) protein_coding-exon (ENSMUSG00000039629.14, exon 21 of 21) -3815 ENSMUSG00000082036.1 ENSMUSG00000082036 ENSMUST00000122395 Gm13724 processed_pseudogene Interval_24550 chr11 34302949 34303803 + 0 NA intron (ENSMUSG00000020143.15, intron 29 of 34) protein_coding-intron (ENSMUSG00000020143.15, intron 29 of 51) 3669 ENSMUSG00000087122.1 ENSMUSG00000087122 ENSMUST00000147359 4930403D09Rik antisense Interval_33301 chr11 115785768 115786672 + 0 NA TTS (ENSMUSG00000020747.18) protein_coding-TTS (ENSMUSG00000020747.18) 5521 ENSMUSG00000020747.18 ENSMUSG00000020747 ENSMUST00000125918 Tmem94 protein_coding Interval_102095 chr3 17185382 17185962 + 0 NA Intergenic Intergenic 45303 ENSMUSG00000095827.2 ENSMUSG00000095827 ENSMUST00000177874 Gm5283 processed_pseudogene Interval_86856 chr19 44387948 44390027 + 0 NA Intergenic Intergenic 17703 ENSMUSG00000037071.3 ENSMUSG00000037071 ENSMUST00000235741 Scd1 protein_coding Interval_6736 chr1 119074939 119077257 + 0 NA Intergenic Intergenic 17629 ENSMUSG00000097408.1 ENSMUSG00000097408 ENSMUST00000181458 Gm26831 lincRNA Interval_36179 chr12 38043797 38044039 + 0 NA intron (ENSMUSG00000036095.11, intron 2 of 13) protein_coding-intron (ENSMUSG00000036095.11, intron 2 of 24) 31817 ENSMUSG00000113608.1 ENSMUSG00000113608 ENSMUST00000221127 Gm48715 antisense Interval_31363 chr11 100271066 100271836 + 0 NA Intergenic Intergenic -5473 ENSMUSG00000053654.7 ENSMUSG00000053654 ENSMUST00000017270 Krt42 protein_coding Interval_68411 chr16 76130147 76130388 + 0 NA intron (ENSMUSG00000116695.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000116695.1, intron 1 of 1) 2404 ENSMUSG00000077197.1 ENSMUSG00000077197 ENSMUST00000104009 Gm22268 snoRNA Interval_110529 chr4 3621323 3622522 + 0 NA Intergenic Intergenic 2733 ENSMUSG00000088790.1 ENSMUSG00000088790 ENSMUST00000158165 Gm22541 snoRNA Interval_159415 chr8 94449158 94449493 + 0 NA intron (ENSMUSG00000074151.13, intron 2 of 2) protein_coding-intron (ENSMUSG00000074151.13, intron 2 of 52) 14969 ENSMUSG00000074151.13 ENSMUSG00000074151 ENSMUST00000137032 Nlrc5 protein_coding Interval_19553 chr10 103103415 103103651 + 0 NA intron (ENSMUSG00000019892.13, intron 23 of 25) protein_coding-intron (ENSMUSG00000019892.13, intron 23 of 25) -17703 ENSMUSG00000077528.1 ENSMUSG00000077528 ENSMUST00000104340 Gm25376 snoRNA Interval_12161 chr1 190269921 190270163 + 0 NA Intergenic Intergenic -99362 ENSMUSG00000010175.13 ENSMUSG00000010175 ENSMUST00000177288 Prox1 protein_coding Interval_147127 chr7 63626614 63628147 + 0 NA intron (ENSMUSG00000033510.14, intron 2 of 13) protein_coding-intron (ENSMUSG00000033510.14, intron 2 of 13) 21361 ENSMUSG00000093751.1 ENSMUSG00000093751 ENSMUST00000176164 Gm3307 processed_pseudogene Interval_88745 chr2 10195390 10195816 + 0 NA intron (ENSMUSG00000025780.7, intron 5 of 13) protein_coding-intron (ENSMUSG00000025780.7, intron 5 of 13) 42032 ENSMUSG00000025780.7 ENSMUSG00000025780 ENSMUST00000026886 Itih5 protein_coding Interval_64959 chr16 17530401 17531571 + 0 NA promoter-TSS (ENSMUSG00000022760.17) protein_coding-promoter-TSS (ENSMUSG00000022760.17) 126 ENSMUSG00000022760.17 ENSMUSG00000022760 ENSMUST00000231623 Thap7 protein_coding Interval_105577 chr3 87859828 87860125 + 0 NA intron (ENSMUSG00000004895.9, intron 6 of 6) protein_coding-intron (ENSMUSG00000004895.9, intron 6 of 6) 12965 ENSMUSG00000028071.12 ENSMUSG00000028071 ENSMUST00000194639 Sh2d2a protein_coding Interval_46187 chr13 62288969 62289593 + 0 NA Intergenic Intergenic 16520 ENSMUSG00000113081.1 ENSMUSG00000113081 ENSMUST00000221763 Gm3333 transcribed_processed_pseudogene Interval_173174 chrX 73805087 73805342 + 0 NA intron (ENSMUSG00000002006.12, intron 1 of 7) protein_coding-intron (ENSMUSG00000002006.12, intron 1 of 7) -4203 ENSMUSG00000064536.1 ENSMUSG00000064536 ENSMUST00000082602 Gm23615 snoRNA Interval_12377 chr1 192770135 192771589 + 0 NA intron (ENSMUSG00000037375.16, intron 1 of 4) protein_coding-intron (ENSMUSG00000037375.16, intron 1 of 11) 130 ENSMUSG00000037375.16 ENSMUSG00000037375 ENSMUST00000192946 Hhat protein_coding Interval_154781 chr8 23314190 23314706 + 0 NA Intergenic Intergenic -24284 ENSMUSG00000077399.1 ENSMUSG00000077399 ENSMUST00000104211 Gm24335 snoRNA Interval_101439 chr2 181401927 181402232 + 0 NA intron (ENSMUSG00000027583.13, intron 2 of 3) protein_coding-intron (ENSMUSG00000027583.13, intron 3 of 4) 17668 ENSMUSG00000085028.2 ENSMUSG00000085028 ENSMUST00000176590 Slc2a4rg-ps transcribed_unitary_pseudogene Interval_151776 chr7 126582714 126584913 + 0 NA promoter-TSS (ENSMUSG00000030720.16) protein_coding-promoter-TSS (ENSMUSG00000030720.16) 494 ENSMUSG00000030720.16 ENSMUSG00000030720 ENSMUST00000128049 Cln3 protein_coding Interval_26230 chr11 55312411 55312659 + 0 NA promoter-TSS (ENSMUSG00000055333.14) protein_coding-promoter-TSS (ENSMUSG00000055333.14) -278 ENSMUSG00000055333.14 ENSMUSG00000055333 ENSMUST00000108864 Fat2 protein_coding Interval_70815 chr17 14953065 14954214 + 0 NA promoter-TSS (ENSMUSG00000023883.13) protein_coding-promoter-TSS (ENSMUSG00000023883.13) -933 ENSMUSG00000023883.13 ENSMUSG00000023883 ENSMUST00000167805 Phf10 protein_coding Interval_54675 chr14 73179661 73180158 + 0 NA intron (ENSMUSG00000022106.14, intron 14 of 14) protein_coding-intron (ENSMUSG00000022106.14, intron 14 of 14) 7412 ENSMUSG00000090706.1 ENSMUSG00000090706 ENSMUST00000168470 Gm17233 antisense Interval_47428 chr13 83997636 83998452 + 0 NA exon (ENSMUSG00000114930.1, exon 1 of 1) processed_pseudogene-exon (ENSMUSG00000114930.1, exon 1 of 1) 395 ENSMUSG00000114930.1 ENSMUSG00000114930 ENSMUST00000225255 Gm8447 processed_pseudogene Interval_23848 chr11 27085982 27086257 + 0 NA TTS (ENSMUSG00000084588.1) rRNA-TTS (ENSMUSG00000084588.1) 993 ENSMUSG00000084588.1 ENSMUSG00000084588 ENSMUST00000122639 n-R5s68 rRNA Interval_81864 chr18 65496896 65498611 + 0 NA Intergenic Intergenic -3653 ENSMUSG00000118389.1 ENSMUSG00000118389 ENSMUST00000237946 Gm50246 processed_pseudogene Interval_1378 chr1 21124553 21125692 + 0 NA Intergenic Intergenic 45008 ENSMUSG00000099971.1 ENSMUSG00000099971 ENSMUST00000186612 Gm28287 antisense Interval_62094 chr15 86471411 86471973 + 0 NA exon (ENSMUSG00000115918.1, exon 2 of 2) antisense-exon (ENSMUSG00000115918.1, exon 2 of 2) 3406 ENSMUSG00000115918.1 ENSMUSG00000115918 ENSMUST00000229685 A930001M01Rik antisense Interval_60077 chr15 64626284 64627764 + 0 NA TTS (ENSMUSG00000115328.1) lincRNA-TTS (ENSMUSG00000115328.1) 6484 ENSMUSG00000115328.1 ENSMUSG00000115328 ENSMUST00000227641 Gm30691 lincRNA Interval_33931 chr11 119509501 119509707 + 0 NA TTS (ENSMUSG00000039850.16) protein_coding-TTS (ENSMUSG00000039850.16) 18053 ENSMUSG00000039850.16 ENSMUSG00000039850 ENSMUST00000132015 Endov protein_coding Interval_123683 chr5 34487292 34487540 + 0 NA TTS (ENSMUSG00000037210.16) protein_coding-TTS (ENSMUSG00000037210.16) 102 ENSMUSG00000106678.1 ENSMUSG00000106678 ENSMUST00000200867 Gm43457 TEC Interval_59251 chr15 49857745 49858047 + 0 NA Intergenic Intergenic -55486 ENSMUSG00000115446.1 ENSMUSG00000115446 ENSMUST00000227486 Gm49186 processed_pseudogene Interval_33168 chr11 114880597 114880828 + 0 NA Intergenic Intergenic -9582 ENSMUSG00000034652.12 ENSMUSG00000034652 ENSMUST00000153245 Cd300a protein_coding Interval_103438 chr3 41578585 41578872 + 0 NA intron (ENSMUSG00000025764.14, intron 1 of 8) protein_coding-intron (ENSMUSG00000025764.14, intron 1 of 10) -15030 ENSMUSG00000103843.1 ENSMUSG00000103843 ENSMUST00000192060 Gm31266 antisense Interval_138169 chr6 85847461 85849999 + 0 NA Intergenic Intergenic 4750 ENSMUSG00000040078.9 ENSMUSG00000040078 ENSMUST00000160012 Ptges3-ps processed_pseudogene Interval_16941 chr10 70030521 70031666 + 0 NA Intergenic Intergenic -143918 ENSMUSG00000048701.13 ENSMUSG00000048701 ENSMUST00000135607 Ccdc6 protein_coding Interval_57406 chr15 10619648 10619948 + 0 NA intron (ENSMUSG00000022246.14, intron 3 of 16) protein_coding-intron (ENSMUSG00000022246.14, intron 3 of 17) 19461 ENSMUSG00000115667.1 ENSMUSG00000115667 ENSMUST00000228059 Gm10389 antisense Interval_4745 chr1 78247049 78248024 + 0 NA Intergenic Intergenic -30060 ENSMUSG00000118426.1 ENSMUSG00000118426 ENSMUST00000238744 Gm2102 processed_pseudogene Interval_7965 chr1 134906709 134907642 + 0 NA intron (ENSMUSG00000073557.12, intron 1 of 24) protein_coding-intron (ENSMUSG00000073557.12, intron 1 of 23) -55443 ENSMUSG00000026429.9 ENSMUSG00000026429 ENSMUST00000139617 Ube2t protein_coding Interval_111946 chr4 32733943 32734882 + 0 NA exon (ENSMUSG00000058006.12, exon 62 of 102) protein_coding-exon (ENSMUSG00000058006.12, exon 62 of 102) -65867 ENSMUSG00000045854.4 ENSMUSG00000045854 ENSMUST00000130321 Lyrm2 protein_coding Interval_105349 chr3 85337904 85338934 + 0 NA intron (ENSMUSG00000102805.5, intron 3 of 9) protein_coding-intron (ENSMUSG00000102805.5, intron 3 of 9) 20900 ENSMUSG00000099995.1 ENSMUSG00000099995 ENSMUST00000189046 1700036G14Rik antisense Interval_75269 chr17 65578818 65579115 + 0 NA exon (ENSMUSG00000024091.9, exon 6 of 6) protein_coding-exon (ENSMUSG00000024091.9, exon 6 of 6) 16004 ENSMUSG00000024091.9 ENSMUSG00000024091 ENSMUST00000232686 Vapa protein_coding Interval_17231 chr10 75160121 75161058 + 0 NA intron (ENSMUSG00000009681.10, intron 1 of 3) protein_coding-intron (ENSMUSG00000009681.10, intron 14 of 22) -15787 ENSMUSG00000009681.10 ENSMUSG00000009681 ENSMUST00000219807 Bcr protein_coding Interval_11636 chr1 183656897 183657577 + 0 NA Intergenic Intergenic 24894 ENSMUSG00000090533.2 ENSMUSG00000090533 ENSMUST00000172123 Gm8214 processed_pseudogene Interval_155 JH584304.1 8899 11012 + 0 NA NA NA NA NA Interval_165854 chr9 53828628 53830343 + 0 NA Intergenic Intergenic 18768 ENSMUSG00000042195.9 ENSMUSG00000042195 ENSMUST00000216515 Slc35f2 protein_coding Interval_30197 chr11 90442472 90442716 + 0 NA Intergenic Intergenic -54621 ENSMUSG00000003949.16 ENSMUSG00000003949 ENSMUST00000145786 Hlf protein_coding Interval_130649 chr5 129465605 129466886 + 0 NA Intergenic Intergenic 34756 ENSMUSG00000104873.1 ENSMUSG00000104873 ENSMUST00000199847 Gm40332 TEC Interval_102575 chr3 27935570 27937122 + 0 NA Intergenic Intergenic -39978 ENSMUSG00000043164.3 ENSMUSG00000043164 ENSMUST00000058077 Tmem212 protein_coding Interval_6852 chr1 120093545 120093783 + 0 NA Intergenic Intergenic -19590 ENSMUSG00000050777.7 ENSMUSG00000050777 ENSMUST00000056089 Tmem37 protein_coding Interval_69805 chr16 96721259 96721477 + 0 NA intron (ENSMUSG00000050272.10, intron 11 of 32) protein_coding-intron (ENSMUSG00000050272.10, intron 11 of 32) -2144 ENSMUSG00000117000.1 ENSMUSG00000117000 ENSMUST00000233368 Gm32509 processed_transcript Interval_173618 chrX 101083841 101086111 + 0 NA promoter-TSS (ENSMUSG00000031297.14) protein_coding-promoter-TSS (ENSMUSG00000031297.14) -2517 ENSMUSG00000031297.14 ENSMUSG00000031297 ENSMUST00000151922 Slc7a3 protein_coding Interval_42119 chr13 8966106 8967495 + 0 NA promoter-TSS (ENSMUSG00000113466.1) unprocessed_pseudogene-promoter-TSS (ENSMUSG00000113466.1) 95 ENSMUSG00000113466.1 ENSMUSG00000113466 ENSMUST00000221977 Gm48649 unprocessed_pseudogene Interval_135444 chr6 39389480 39390170 + 0 NA exon (ENSMUSG00000029923.4, exon 4 of 4) protein_coding-exon (ENSMUSG00000029923.4, exon 4 of 4) 8650 ENSMUSG00000029923.4 ENSMUSG00000029923 ENSMUST00000031986 Rab19 protein_coding Interval_173668 chrX 101672069 101672752 + 0 NA intron (ENSMUSG00000034160.13, intron 9 of 16) protein_coding-intron (ENSMUSG00000034160.13, intron 14 of 21) 19440 ENSMUSG00000082729.3 ENSMUSG00000082729 ENSMUST00000121259 Gm14845 processed_pseudogene Interval_121826 chr5 8544242 8545650 + 0 NA intron (ENSMUSG00000040570.14, intron 6 of 10) protein_coding-intron (ENSMUSG00000040570.14, intron 6 of 9) -30094 ENSMUSG00000105740.1 ENSMUSG00000105740 ENSMUST00000200378 Gm42685 TEC Interval_104594 chr3 68608324 68609339 + 0 NA intron (ENSMUSG00000027777.15, intron 3 of 5) protein_coding-intron (ENSMUSG00000027777.15, intron 3 of 7) -61123 ENSMUSG00000084617.1 ENSMUSG00000084617 ENSMUST00000122668 Gm22073 snRNA Interval_41715 chr12 118232667 118232870 + 0 NA exon (ENSMUSG00000113831.1, exon 1 of 1) lincRNA-exon (ENSMUSG00000113831.1, exon 1 of 1) 1796 ENSMUSG00000113831.1 ENSMUSG00000113831 ENSMUST00000220671 Gm49602 lincRNA Interval_8927 chr1 152348083 152348339 + 0 NA Intergenic Intergenic 38409 ENSMUSG00000014980.14 ENSMUSG00000014980 ENSMUST00000188105 Tsen15 protein_coding Interval_134483 chr6 29052896 29053131 + 0 NA Intergenic Intergenic -12449 ENSMUSG00000059201.12 ENSMUSG00000059201 ENSMUST00000169505 Lep protein_coding Interval_136294 chr6 52663130 52663396 + 0 NA Intergenic Intergenic -22948 ENSMUSG00000029776.11 ENSMUSG00000029776 ENSMUST00000205086 Hibadh protein_coding Interval_121530 chr5 3276787 3277038 + 0 NA intron (ENSMUSG00000106658.1, intron 2 of 4) lincRNA-intron (ENSMUSG00000106658.1, intron 2 of 4) 6593 ENSMUSG00000106658.1 ENSMUSG00000106658 ENSMUST00000197473 Gm36548 lincRNA Interval_70239 chr17 7176671 7176894 + 0 NA intron (ENSMUSG00000023809.10, intron 1 of 20) protein_coding-intron (ENSMUSG00000023809.10, intron 1 of 20) 6655 ENSMUSG00000023809.10 ENSMUSG00000023809 ENSMUST00000231530 Rps6ka2 protein_coding Interval_147820 chr7 73810308 73810881 + 0 NA intron (ENSMUSG00000074067.9, intron 2 of 3) lincRNA-intron (ENSMUSG00000074067.9, intron 2 of 4) 5909 ENSMUSG00000074067.9 ENSMUSG00000074067 ENSMUST00000098372 Gm10619 lincRNA Interval_171528 chr9 119033530 119034088 + 0 NA TTS (ENSMUSG00000047409.13) protein_coding-TTS (ENSMUSG00000047409.13) 2013 ENSMUSG00000065513.1 ENSMUSG00000065513 ENSMUST00000083579 Mir26a-1 miRNA Interval_16353 chr10 62422213 62422820 + 0 NA promoter-TSS (ENSMUSG00000020080.8) protein_coding-promoter-TSS (ENSMUSG00000020080.8) -108 ENSMUSG00000020080.8 ENSMUSG00000020080 ENSMUST00000159579 Hkdc1 protein_coding Interval_151678 chr7 125982051 125982287 + 0 NA intron (ENSMUSG00000046182.8, intron 2 of 6) protein_coding-intron (ENSMUSG00000046182.8, intron 2 of 6) 82278 ENSMUSG00000108376.1 ENSMUSG00000108376 ENSMUST00000206586 Gm44874 TEC Interval_89297 chr2 18978758 18979454 + 0 NA intron (ENSMUSG00000026737.12, intron 1 of 9) protein_coding-intron (ENSMUSG00000026737.12, intron 1 of 9) -19237 ENSMUSG00000026736.2 ENSMUSG00000026736 ENSMUST00000238778 4930426L09Rik bidirectional_promoter_lncRNA Interval_147108 chr7 63201856 63202085 + 0 NA intron (ENSMUSG00000030525.8, intron 2 of 4) protein_coding-intron (ENSMUSG00000030525.8, intron 2 of 9) 10599 ENSMUSG00000030525.8 ENSMUSG00000030525 ENSMUST00000208304 Chrna7 protein_coding Interval_43021 chr13 23260670 23261077 + 0 NA Intergenic Intergenic -5661 ENSMUSG00000082593.1 ENSMUSG00000082593 ENSMUST00000119764 Gm11331 unprocessed_pseudogene Interval_116543 chr4 115254858 115255585 + 0 NA TTS (ENSMUSG00000083138.3) protein_coding-TTS (ENSMUSG00000083138.3) 13137 ENSMUSG00000083138.3 ENSMUSG00000083138 ENSMUST00000118278 Cyp4a29 protein_coding Interval_25768 chr11 51615141 51616092 + 0 NA Intergenic Intergenic -4119 ENSMUSG00000001056.3 ENSMUSG00000001056 ENSMUST00000001083 Nhp2 protein_coding Interval_132180 chr5 143148516 143149712 + 0 NA Intergenic Intergenic -8063 ENSMUSG00000104836.1 ENSMUSG00000104836 ENSMUST00000198952 Gm44405 miRNA Interval_20875 chr10 121670142 121670533 + 0 NA intron (ENSMUSG00000047642.15, intron 5 of 6) protein_coding-intron (ENSMUSG00000047642.15, intron 5 of 12) 28749 ENSMUSG00000047642.15 ENSMUSG00000047642 ENSMUST00000132744 D930020B18Rik protein_coding Interval_155496 chr8 33912615 33915029 + 0 NA intron (ENSMUSG00000031586.17, intron 1 of 8) protein_coding-intron (ENSMUSG00000031586.17, intron 1 of 7) 15570 ENSMUSG00000031586.17 ENSMUSG00000031586 ENSMUST00000231942 Rbpms protein_coding Interval_121874 chr5 9055941 9056651 + 0 NA intron (ENSMUSG00000114430.1, intron 2 of 2) lincRNA-intron (ENSMUSG00000114430.1, intron 2 of 2) 21516 ENSMUSG00000114430.1 ENSMUSG00000114430 ENSMUST00000224996 Gm40264 lincRNA Interval_138442 chr6 88231791 88232543 + 0 NA intron (ENSMUSG00000048206.6, intron 2 of 3) protein_coding-intron (ENSMUSG00000048206.6, intron 2 of 3) -8528 ENSMUSG00000047046.8 ENSMUSG00000047046 ENSMUST00000156018 1700031F10Rik antisense Interval_41551 chr12 116226537 116226740 + 0 NA intron (ENSMUSG00000042050.8, intron 2 of 11) protein_coding-intron (ENSMUSG00000042050.8, intron 12 of 21) 15929 ENSMUSG00000096694.1 ENSMUSG00000096694 ENSMUST00000180307 Gm23190 miRNA Interval_18655 chr10 88839836 88840111 + 0 NA Intergenic Intergenic -13190 ENSMUSG00000004356.8 ENSMUSG00000004356 ENSMUST00000220439 Utp20 protein_coding Interval_112095 chr4 34661205 34661454 + 0 NA Intergenic Intergenic -22550 ENSMUSG00000088338.1 ENSMUSG00000088338 ENSMUST00000157713 Gm22849 misc_RNA Interval_114484 chr4 80910566 80912434 + 0 NA exon (ENSMUSG00000048706.3, exon 1 of 2) protein_coding-exon (ENSMUSG00000048706.3, exon 1 of 2) 854 ENSMUSG00000048706.3 ENSMUSG00000048706 ENSMUST00000055922 Lurap1l protein_coding Interval_677 chr1 9797705 9798775 + 0 NA promoter-TSS (ENSMUSG00000025915.14) protein_coding-promoter-TSS (ENSMUSG00000025915.14) 4313 ENSMUSG00000046334.4 ENSMUSG00000046334 ENSMUST00000063059 Gm6195 processed_pseudogene Interval_22796 chr11 15761609 15761834 + 0 NA Intergenic Intergenic -276072 ENSMUSG00000104323.1 ENSMUSG00000104323 ENSMUST00000193500 Gm37319 TEC Interval_127513 chr5 104769451 104771620 + 0 NA Intergenic Intergenic -5244 ENSMUSG00000048334.8 ENSMUSG00000048334 ENSMUST00000055593 Gm8258 processed_pseudogene Interval_152920 chr7 139741182 139742063 + 0 NA Intergenic Intergenic 22223 ENSMUSG00000056777.5 ENSMUSG00000056777 ENSMUST00000072532 Rpl21-ps13 processed_pseudogene Interval_29935 chr11 87868508 87868825 + 0 NA TTS (ENSMUSG00000052234.2) protein_coding-TTS (ENSMUSG00000052234.2) 3102 ENSMUSG00000052234.2 ENSMUSG00000052234 ENSMUST00000125590 Epx protein_coding Interval_21733 chr11 4012156 4012984 + 0 NA Intergenic Intergenic 10113 ENSMUSG00000084170.1 ENSMUSG00000084170 ENSMUST00000121403 Gm11954 processed_pseudogene Interval_144339 chr7 24562237 24562728 + 0 NA intron (ENSMUSG00000051768.9, intron 3 of 5) protein_coding-intron (ENSMUSG00000051768.9, intron 3 of 16) 15281 ENSMUSG00000051768.9 ENSMUSG00000051768 ENSMUST00000205453 Xrcc1 protein_coding Interval_103676 chr3 51539667 51540470 + 0 NA intron (ENSMUSG00000037111.9, intron 3 of 7) protein_coding-intron (ENSMUSG00000037111.9, intron 3 of 7) -3421 ENSMUSG00000037111.9 ENSMUSG00000037111 ENSMUST00000194828 Setd7 protein_coding Interval_148040 chr7 78765589 78766576 + 0 NA Intergenic Intergenic 12284 ENSMUSG00000108536.1 ENSMUSG00000108536 ENSMUST00000205558 Gm45059 TEC Interval_164910 chr9 43031119 43031506 + 0 NA intron (ENSMUSG00000059495.14, intron 3 of 4) protein_coding-intron (ENSMUSG00000059495.14, intron 4 of 41) -4652 ENSMUSG00000059495.14 ENSMUSG00000059495 ENSMUST00000214175 Arhgef12 protein_coding Interval_5341 chr1 87721342 87723674 + 0 NA Intergenic Intergenic -33580 ENSMUSG00000026289.15 ENSMUSG00000026289 ENSMUST00000127884 Atg16l1 protein_coding Interval_106821 chr3 101097763 101098524 + 0 NA intron (ENSMUSG00000027864.9, intron 1 of 8) protein_coding-intron (ENSMUSG00000027864.9, intron 1 of 8) -10750 ENSMUSG00000105717.1 ENSMUSG00000105717 ENSMUST00000200367 Gm43465 sense_intronic Interval_70962 chr17 16857608 16858216 + 0 NA Intergenic Intergenic 10517 ENSMUSG00000116958.1 ENSMUSG00000116958 ENSMUST00000231260 Gm6705 processed_pseudogene Interval_146618 chr7 48514854 48515089 + 0 NA Intergenic Intergenic -18846 ENSMUSG00000074109.4 ENSMUSG00000074109 ENSMUST00000186394 Mrgprx2 protein_coding Interval_101893 chr3 10442724 10442894 + 0 NA Intergenic Intergenic -2709 ENSMUSG00000027534.16 ENSMUSG00000027534 ENSMUST00000195822 Snx16 protein_coding Interval_173297 chrX 77509017 77512266 + 0 NA promoter-TSS (ENSMUSG00000025246.13) protein_coding-promoter-TSS (ENSMUSG00000025246.13) -573 ENSMUSG00000025246.13 ENSMUSG00000025246 ENSMUST00000133893 Tbl1x protein_coding Interval_38141 chr12 75906920 75908579 + 0 NA intron (ENSMUSG00000063450.14, intron 15 of 15) protein_coding-intron (ENSMUSG00000063450.14, intron 14 of 115) -1354 ENSMUSG00000092922.1 ENSMUSG00000092922 ENSMUST00000175181 Mir5101 miRNA Interval_77830 chr18 4302139 4302720 + 0 NA Intergenic Intergenic -7947 ENSMUSG00000117482.1 ENSMUSG00000117482 ENSMUST00000234061 Gm7400 processed_pseudogene Interval_102676 chr3 29719141 29719563 + 0 NA Intergenic Intergenic -51932 ENSMUSG00000103095.1 ENSMUSG00000103095 ENSMUST00000191640 Gm37557 processed_pseudogene Interval_100617 chr2 170487789 170488576 + 0 NA intron (ENSMUSG00000038567.5, intron 7 of 11) protein_coding-intron (ENSMUSG00000038567.5, intron 7 of 11) 8963 ENSMUSG00000038567.5 ENSMUSG00000038567 ENSMUST00000038824 Cyp24a1 protein_coding Interval_22080 chr11 6209142 6209688 + 0 NA Intergenic Intergenic 9386 ENSMUSG00000096923.1 ENSMUSG00000096923 ENSMUST00000181545 A730071L15Rik protein_coding Interval_93991 chr2 80537761 80538884 + 0 NA intron (ENSMUSG00000027002.13, intron 13 of 31) protein_coding-intron (ENSMUSG00000027002.13, intron 12 of 30) 12074 ENSMUSG00000081487.1 ENSMUSG00000081487 ENSMUST00000119360 Gm13689 processed_pseudogene Interval_110624 chr4 4989738 4991130 + 0 NA Intergenic Intergenic -11560 ENSMUSG00000083228.1 ENSMUSG00000083228 ENSMUST00000118541 Gm11779 processed_pseudogene Interval_51446 chr14 27629108 27630126 + 0 NA intron (ENSMUSG00000040640.11, intron 2 of 3) protein_coding-intron (ENSMUSG00000040640.11, intron 1 of 15) -77459 ENSMUSG00000114482.1 ENSMUSG00000114482 ENSMUST00000225617 Gm7604 processed_pseudogene Interval_27601 chr11 68982440 68983943 + 0 NA Intergenic Intergenic 7487 ENSMUSG00000092727.1 ENSMUSG00000092727 ENSMUST00000174986 Mir3062 miRNA Interval_41909 chr13 4248773 4249029 + 0 NA TTS (ENSMUSG00000071551.13) protein_coding-TTS (ENSMUSG00000071551.13) 166 ENSMUSG00000086265.1 ENSMUSG00000086265 ENSMUST00000132531 Marcksl1-ps4 processed_pseudogene Interval_147590 chr7 68704395 68705607 + 0 NA Intergenic Intergenic 21466 ENSMUSG00000108876.1 ENSMUSG00000108876 ENSMUST00000207441 Gm44692 lincRNA Interval_47199 chr13 77848885 77849103 + 0 NA intron (ENSMUSG00000064138.14, intron 4 of 5) protein_coding-intron (ENSMUSG00000064138.14, intron 5 of 9) 146961 ENSMUSG00000064138.14 ENSMUSG00000064138 ENSMUST00000224013 Fam172a protein_coding Interval_106382 chr3 95793128 95793893 + 0 NA intron (ENSMUSG00000028106.13, intron 1 of 9) protein_coding-intron (ENSMUSG00000028106.13, intron 1 of 10) 3374 ENSMUSG00000089493.1 ENSMUSG00000089493 ENSMUST00000158868 Gm26361 snRNA Interval_55296 chr14 81045765 81045990 + 0 NA Intergenic Intergenic -54891 ENSMUSG00000115542.1 ENSMUSG00000115542 ENSMUST00000226987 Gm49046 lincRNA Interval_108609 chr3 129549492 129549973 + 0 NA intron (ENSMUSG00000041220.10, intron 2 of 4) protein_coding-intron (ENSMUSG00000041220.10, intron 2 of 4) 11591 ENSMUSG00000106092.1 ENSMUSG00000106092 ENSMUST00000200283 Gm43072 TEC Interval_34130 chr11 120799959 120800757 + 0 NA Intergenic Intergenic -3963 ENSMUSG00000025155.15 ENSMUSG00000025155 ENSMUST00000129955 Dus1l protein_coding Interval_2608 chr1 42108596 42108804 + 0 NA Intergenic Intergenic 5411 ENSMUSG00000100178.1 ENSMUSG00000100178 ENSMUST00000191574 Gm5267 processed_pseudogene Interval_1969 chr1 35219734 35221606 + 0 NA Intergenic Intergenic -41586 ENSMUSG00000077231.1 ENSMUSG00000077231 ENSMUST00000104043 Gm25096 snoRNA Interval_137655 chr6 77748423 77748589 + 0 NA exon (ENSMUSG00000108102.1, exon 1 of 1) TEC-exon (ENSMUSG00000108102.1, exon 1 of 1) 1276 ENSMUSG00000108102.1 ENSMUSG00000108102 ENSMUST00000203832 Gm44437 TEC Interval_83736 chr19 4282649 4283568 + 0 NA promoter-TSS (ENSMUSG00000005986.16) protein_coding-promoter-TSS (ENSMUSG00000005986.16) -2097 ENSMUSG00000005986.16 ENSMUSG00000005986 ENSMUST00000167215 Ankrd13d protein_coding Interval_32299 chr11 106757561 106758112 + 0 NA intron (ENSMUSG00000040528.15, intron 4 of 9) protein_coding-intron (ENSMUSG00000040528.15, intron 3 of 6) 6571 ENSMUSG00000040528.15 ENSMUSG00000040528 ENSMUST00000182479 Milr1 protein_coding Interval_60533 chr15 74678938 74680217 + 0 NA Intergenic Intergenic -7007 ENSMUSG00000022602.14 ENSMUSG00000022602 ENSMUST00000110009 Arc protein_coding Interval_161740 chr8 122475157 122476607 + 0 NA promoter-TSS (ENSMUSG00000049482.16) protein_coding-promoter-TSS (ENSMUSG00000049482.16) -194 ENSMUSG00000014470.4 ENSMUSG00000014470 ENSMUST00000148780 Rnf166 protein_coding Interval_102322 chr3 21899567 21900310 + 0 NA Intergenic Intergenic 98530 ENSMUSG00000106321.1 ENSMUSG00000106321 ENSMUST00000196313 Gm43674 lincRNA Interval_87539 chr19 53325668 53326184 + 0 NA promoter-TSS (ENSMUSG00000118369.1) processed_transcript-promoter-TSS (ENSMUSG00000118369.1) -183 ENSMUSG00000118369.1 ENSMUSG00000118369 ENSMUST00000237210 Gm30541 processed_transcript Interval_127115 chr5 100383750 100384024 + 0 NA exon (ENSMUSG00000035325.16, exon 17 of 28) protein_coding-exon (ENSMUSG00000035325.16, exon 17 of 28) 8726 ENSMUSG00000035325.16 ENSMUSG00000035325 ENSMUST00000182144 Sec31a protein_coding Interval_67072 chr16 42574861 42576172 + 0 NA Intergenic Intergenic -88410 ENSMUSG00000116679.1 ENSMUSG00000116679 ENSMUST00000232064 Gm49739 processed_pseudogene Interval_65739 chr16 26581191 26582267 + 0 NA promoter-TSS (ENSMUSG00000022514.14) protein_coding-promoter-TSS (ENSMUSG00000022514.14) -54960 ENSMUSG00000091972.2 ENSMUSG00000091972 ENSMUST00000165687 Tmem207 protein_coding Interval_18061 chr10 81599756 81601013 + 0 NA intron (ENSMUSG00000034758.12, intron 1 of 4) protein_coding-intron (ENSMUSG00000034758.12, intron 1 of 13) -4969 ENSMUSG00000034758.12 ENSMUSG00000034758 ENSMUST00000127546 Tle6 protein_coding Interval_82820 chr18 77200091 77200323 + 0 NA intron (ENSMUSG00000025425.18, intron 1 of 6) protein_coding-intron (ENSMUSG00000025425.18, intron 1 of 7) -13844 ENSMUSG00000073532.3 ENSMUSG00000073532 ENSMUST00000097520 Gm7276 bidirectional_promoter_lncRNA Interval_149760 chr7 101316762 101317041 + 0 NA promoter-TSS (ENSMUSG00000030688.15) protein_coding-promoter-TSS (ENSMUSG00000030688.15) -4552 ENSMUSG00000030688.15 ENSMUSG00000030688 ENSMUST00000174140 Stard10 protein_coding Interval_104193 chr3 60266837 60268414 + 0 NA Intergenic Intergenic 75468 ENSMUSG00000107270.1 ENSMUSG00000107270 ENSMUST00000201864 Tgif1-ps processed_pseudogene Interval_144958 chr7 29101004 29101894 + 0 NA intron (ENSMUSG00000030592.18, intron 21 of 108) protein_coding-intron (ENSMUSG00000030592.18, intron 20 of 105) -17755 ENSMUSG00000089219.1 ENSMUSG00000089219 ENSMUST00000158594 Mir1963 miRNA Interval_120702 chr4 150186485 150187265 + 0 NA TTS (ENSMUSG00000028972.11) protein_coding-TTS (ENSMUSG00000028972.11) 9248 ENSMUSG00000028972.11 ENSMUSG00000028972 ENSMUST00000126449 Car6 protein_coding Interval_170554 chr9 108661519 108662749 + 0 NA promoter-TSS (ENSMUSG00000032602.6) protein_coding-promoter-TSS (ENSMUSG00000032602.6) -8406 ENSMUSG00000095798.1 ENSMUSG00000095798 ENSMUST00000116956 Gm26298 miRNA Interval_59698 chr15 58708024 58708356 + 0 NA Intergenic Intergenic 73761 ENSMUSG00000093677.1 ENSMUSG00000093677 ENSMUST00000176387 Gm20712 sense_overlapping Interval_173246 chrX 75137852 75138352 + 0 NA Intergenic Intergenic -5322 ENSMUSG00000083416.1 ENSMUSG00000083416 ENSMUST00000121894 Gm15378 processed_pseudogene Interval_85872 chr19 32587668 32588573 + 0 NA Intergenic Intergenic -31885 ENSMUSG00000024899.7 ENSMUSG00000024899 ENSMUST00000025833 Papss2 protein_coding Interval_67505 chr16 49986821 49987561 + 0 NA Intergenic Intergenic -123882 ENSMUSG00000098028.1 ENSMUSG00000098028 ENSMUST00000182962 Gm8824 processed_pseudogene Interval_134532 chr6 29382356 29382892 + 0 NA intron (ENSMUSG00000058831.13, intron 1 of 2) protein_coding-intron (ENSMUSG00000058831.13, intron 1 of 2) 5844 ENSMUSG00000058831.13 ENSMUSG00000058831 ENSMUST00000173653 Opn1sw protein_coding Interval_45586 chr13 56081976 56082655 + 0 NA intron (ENSMUSG00000015937.15, intron 3 of 3) protein_coding-intron (ENSMUSG00000015937.15, intron 8 of 8) -52081 ENSMUSG00000114229.1 ENSMUSG00000114229 ENSMUST00000225745 Gm47072 processed_pseudogene Interval_137658 chr6 78036942 78037320 + 0 NA Intergenic Intergenic 32456 ENSMUSG00000097964.1 ENSMUSG00000097964 ENSMUST00000183058 Gm21045 processed_pseudogene Interval_108973 chr3 133786304 133786979 + 0 NA Intergenic Intergenic 4863 ENSMUSG00000106069.1 ENSMUSG00000106069 ENSMUST00000198726 Gm6135 lincRNA Interval_23017 chr11 18949057 18949577 + 0 NA intron (ENSMUSG00000020160.18, intron 7 of 11) protein_coding-intron (ENSMUSG00000020160.18, intron 7 of 12) 57156 ENSMUSG00000103828.1 ENSMUSG00000103828 ENSMUST00000193315 2610001A08Rik TEC Interval_25287 chr11 46125042 46125811 + 0 NA intron (ENSMUSG00000011256.16, intron 11 of 22) protein_coding-intron (ENSMUSG00000011256.16, intron 11 of 22) -8696 ENSMUSG00000011256.16 ENSMUSG00000011256 ENSMUST00000153410 Adam19 protein_coding Interval_102674 chr3 29598941 29599646 + 0 NA intron (ENSMUSG00000063600.14, intron 2 of 4) protein_coding-intron (ENSMUSG00000063600.14, intron 6 of 12) -37451 ENSMUSG00000098315.1 ENSMUSG00000098315 ENSMUST00000184317 Mir21b miRNA Interval_2689 chr1 43470182 43470486 + 0 NA intron (ENSMUSG00000066877.11, intron 1 of 4) protein_coding-intron (ENSMUSG00000066877.11, intron 1 of 4) -18113 ENSMUSG00000103422.1 ENSMUSG00000103422 ENSMUST00000194710 Gm37536 TEC Interval_57717 chr15 16628965 16630641 + 0 NA Intergenic Intergenic -29241 ENSMUSG00000115670.1 ENSMUSG00000115670 ENSMUST00000228469 Gm2611 processed_pseudogene Interval_54847 chr14 75806455 75806891 + 0 NA Intergenic Intergenic -19668 ENSMUSG00000022003.7 ENSMUSG00000022003 ENSMUST00000228379 Slc25a30 protein_coding Interval_38198 chr12 76324431 76325428 + 0 NA promoter-TSS (ENSMUSG00000021057.15) protein_coding-promoter-TSS (ENSMUSG00000021057.15) 24 ENSMUSG00000021057.15 ENSMUSG00000021057 ENSMUST00000172992 Akap5 protein_coding Interval_154411 chr8 15842077 15843916 + 0 NA Intergenic Intergenic -34668 ENSMUSG00000109757.1 ENSMUSG00000109757 ENSMUST00000211639 Gm7128 processed_pseudogene Interval_22065 chr11 6102849 6103565 + 0 NA Intergenic Intergenic 69829 ENSMUSG00000083022.1 ENSMUSG00000083022 ENSMUST00000117476 Rps15a-ps6 processed_pseudogene Interval_63713 chr15 102990486 102991296 + 0 NA promoter-TSS (ENSMUSG00000001657.7) protein_coding-promoter-TSS (ENSMUSG00000001657.7) -998 ENSMUSG00000001657.7 ENSMUSG00000001657 ENSMUST00000189484 Hoxc8 protein_coding Interval_169874 chr9 102675270 102676370 + 0 NA Intergenic Intergenic -17065 ENSMUSG00000099491.1 ENSMUSG00000099491 ENSMUST00000185478 4930533D04Rik lincRNA Interval_114685 chr4 83762232 83762706 + 0 NA intron (ENSMUSG00000052407.17, intron 23 of 25) protein_coding-intron (ENSMUSG00000052407.17, intron 23 of 25) 18792 ENSMUSG00000097942.1 ENSMUSG00000097942 ENSMUST00000182894 Gm26968 sense_intronic Interval_56452 chr14 118872542 118873010 + 0 NA intron (ENSMUSG00000022132.15, intron 3 of 3) protein_coding-intron (ENSMUSG00000022132.15, intron 3 of 4) -3106 ENSMUSG00000115718.1 ENSMUSG00000115718 ENSMUST00000226752 Gm49179 antisense Interval_45967 chr13 59700007 59700514 + 0 NA exon (ENSMUSG00000050876.9, exon 4 of 4) protein_coding-exon (ENSMUSG00000050876.9, exon 4 of 4) 5921 ENSMUSG00000050876.9 ENSMUSG00000050876 ENSMUST00000225362 Spata31d1a protein_coding Interval_22482 chr11 10947654 10948494 + 0 NA Intergenic Intergenic -168411 ENSMUSG00000050830.17 ENSMUSG00000050830 ENSMUST00000154155 Vwc2 protein_coding Interval_158244 chr8 80408248 80408924 + 0 NA Intergenic Intergenic -85195 ENSMUSG00000051839.7 ENSMUSG00000051839 ENSMUST00000063359 Gypa protein_coding Interval_50443 chr14 13332684 13333745 + 0 NA intron (ENSMUSG00000056296.17, intron 3 of 3) protein_coding-intron (ENSMUSG00000056296.17, intron 2 of 5) 20866 ENSMUSG00000081115.2 ENSMUSG00000081115 ENSMUST00000118492 Gm15913 processed_pseudogene Interval_33352 chr11 116077522 116079158 + 0 NA promoter-TSS (ENSMUSG00000057948.12) protein_coding-promoter-TSS (ENSMUSG00000057948.12) -750 ENSMUSG00000057948.12 ENSMUSG00000057948 ENSMUST00000156545 Unc13d protein_coding Interval_149847 chr7 101969669 101971342 + 0 NA promoter-TSS (ENSMUSG00000066306.13) protein_coding-promoter-TSS (ENSMUSG00000066306.13) -234 ENSMUSG00000066306.13 ENSMUSG00000066306 ENSMUST00000209583 Numa1 protein_coding Interval_74871 chr17 56989206 56991020 + 0 NA promoter-TSS (ENSMUSG00000002660.8) protein_coding-promoter-TSS (ENSMUSG00000002660.8) -279 ENSMUSG00000002660.8 ENSMUSG00000002660 ENSMUST00000233845 Clpp protein_coding Interval_141190 chr6 125489853 125492073 + 0 NA intron (ENSMUSG00000030342.8, intron 1 of 7) protein_coding-intron (ENSMUSG00000030342.8, intron 1 of 7) -3465 ENSMUSG00000101162.2 ENSMUSG00000101162 ENSMUST00000185268 Gm26728 processed_transcript Interval_130364 chr5 126733575 126734474 + 0 NA intron (ENSMUSG00000105673.1, intron 2 of 3) lincRNA-intron (ENSMUSG00000105673.1, intron 2 of 3) -6740 ENSMUSG00000106235.1 ENSMUSG00000106235 ENSMUST00000200003 Gm33347 lincRNA Interval_154333 chr8 14690634 14691003 + 0 NA intron (ENSMUSG00000047495.15, intron 3 of 14) protein_coding-intron (ENSMUSG00000047495.15, intron 3 of 14) 56609 ENSMUSG00000084945.1 ENSMUSG00000084945 ENSMUST00000155211 C030037F17Rik antisense Interval_157304 chr8 69155509 69156680 + 0 NA intron (ENSMUSG00000036306.13, intron 1 of 3) protein_coding-intron (ENSMUSG00000036306.13, intron 1 of 3) 26136 ENSMUSG00000036306.13 ENSMUSG00000036306 ENSMUST00000184961 Lzts1 protein_coding Interval_165383 chr9 46980071 46980589 + 0 NA Intergenic Intergenic -1277 ENSMUSG00000111482.1 ENSMUSG00000111482 ENSMUST00000214437 Gm47153 lincRNA Interval_96529 chr2 125355189 125355627 + 0 NA intron (ENSMUSG00000027204.13, intron 31 of 64) protein_coding-intron (ENSMUSG00000027204.13, intron 32 of 65) -71430 ENSMUSG00000087682.1 ENSMUSG00000087682 ENSMUST00000130919 Gm14003 lincRNA Interval_114572 chr4 82589556 82589752 + 0 NA intron (ENSMUSG00000008575.17, intron 1 of 1) protein_coding-intron (ENSMUSG00000008575.17, intron 1 of 1) -2335 ENSMUSG00000084851.1 ENSMUSG00000084851 ENSMUST00000137477 Gm11267 sense_intronic Interval_136752 chr6 59073333 59073607 + 0 NA Intergenic Intergenic -25783 ENSMUSG00000096371.1 ENSMUSG00000096371 ENSMUST00000178930 Gm22367 snoRNA Interval_167541 chr9 70318644 70319680 + 0 NA intron (ENSMUSG00000032220.10, intron 5 of 17) protein_coding-intron (ENSMUSG00000032220.10, intron 5 of 27) 86591 ENSMUSG00000093763.1 ENSMUSG00000093763 ENSMUST00000176002 Mir5626 miRNA Interval_40019 chr12 100517918 100518141 + 0 NA intron (ENSMUSG00000033530.8, intron 1 of 9) protein_coding-intron (ENSMUSG00000033530.8, intron 1 of 19) -51731 ENSMUSG00000033530.8 ENSMUSG00000033530 ENSMUST00000220614 Ttc7b protein_coding Interval_73146 chr17 35076222 35077575 + 0 NA promoter-TSS (ENSMUSG00000013766.11) protein_coding-promoter-TSS (ENSMUSG00000013766.11) -257 ENSMUSG00000013766.11 ENSMUSG00000013766 ENSMUST00000172959 Ly6g6e protein_coding Interval_49048 chr13 107371791 107372200 + 0 NA Intergenic Intergenic 23791 ENSMUSG00000114459.1 ENSMUSG00000114459 ENSMUST00000224355 Gm2736 processed_pseudogene Interval_78067 chr18 7640893 7641120 + 0 NA Intergenic Intergenic -14152 ENSMUSG00000057440.8 ENSMUSG00000057440 ENSMUST00000233992 Mpp7 protein_coding Interval_96567 chr2 125782285 125783409 + 0 NA promoter-TSS (ENSMUSG00000035093.16) protein_coding-promoter-TSS (ENSMUSG00000035093.16) -22533 ENSMUSG00000035093.16 ENSMUSG00000035093 ENSMUST00000136450 Secisbp2l protein_coding Interval_62628 chr15 95797553 95797753 + 0 NA intron (ENSMUSG00000064210.7, intron 1 of 20) protein_coding-intron (ENSMUSG00000064210.7, intron 1 of 19) -6011 ENSMUSG00000097643.1 ENSMUSG00000097643 ENSMUST00000180649 A130051J06Rik antisense Interval_163050 chr9 14822274 14823061 + 0 NA intron (ENSMUSG00000031928.15, intron 13 of 18) protein_coding-intron (ENSMUSG00000031928.15, intron 14 of 19) -14627 ENSMUSG00000111817.1 ENSMUSG00000111817 ENSMUST00000216810 Gm47154 processed_pseudogene Interval_124999 chr5 63615274 63615452 + 0 NA Intergenic Intergenic 35531 ENSMUSG00000104868.1 ENSMUSG00000104868 ENSMUST00000067917 Gm9954 TEC Interval_170886 chr9 111562262 111563310 + 0 NA TTS (ENSMUSG00000106232.1) antisense-TTS (ENSMUSG00000106232.1) 1363 ENSMUSG00000106232.1 ENSMUSG00000106232 ENSMUST00000197414 Gm43236 antisense Interval_125761 chr5 73945674 73946795 + 0 NA promoter-TSS (ENSMUSG00000106968.1) lincRNA-promoter-TSS (ENSMUSG00000106968.1) -147 ENSMUSG00000106968.1 ENSMUSG00000106968 ENSMUST00000202711 C78283 lincRNA Interval_144482 chr7 25382558 25382814 + 0 NA TTS (ENSMUSG00000003123.15) protein_coding-TTS (ENSMUSG00000003123.15) 5867 ENSMUSG00000053714.8 ENSMUSG00000053714 ENSMUST00000206300 4732471J01Rik antisense Interval_39853 chr12 99083515 99084803 + 0 NA Intergenic Intergenic -20701 ENSMUSG00000114089.1 ENSMUSG00000114089 ENSMUST00000220675 Gm47116 lincRNA Interval_56673 chr14 121303149 121304602 + 0 NA promoter-TSS (ENSMUSG00000063410.8) protein_coding-promoter-TSS (ENSMUSG00000063410.8) 55169 ENSMUSG00000085133.2 ENSMUSG00000085133 ENSMUST00000130256 B930095G15Rik sense_intronic Interval_97577 chr2 140065796 140067277 + 0 NA exon (ENSMUSG00000039033.11, exon 1 of 14) protein_coding-exon (ENSMUSG00000039033.11, exon 1 of 14) 6933 ENSMUSG00000080006.4 ENSMUSG00000080006 ENSMUST00000116122 Rps19-ps7 processed_pseudogene Interval_105511 chr3 87155054 87155484 + 0 NA intron (ENSMUSG00000041734.15, intron 1 of 15) protein_coding-intron (ENSMUSG00000041734.15, intron 1 of 13) -2424 ENSMUSG00000102893.1 ENSMUSG00000102893 ENSMUST00000192571 Gm37855 lincRNA Interval_114904 chr4 86829735 86830998 + 0 NA TTS (ENSMUSG00000038024.17) protein_coding-TTS (ENSMUSG00000038024.17) -11789 ENSMUSG00000082969.1 ENSMUSG00000082969 ENSMUST00000121575 Gm12630 processed_pseudogene Interval_172763 chrX 48427838 48429803 + 0 NA intron (ENSMUSG00000031103.12, intron 1 of 7) protein_coding-intron (ENSMUSG00000031103.12, intron 1 of 8) 34312 ENSMUSG00000031103.12 ENSMUSG00000031103 ENSMUST00000140486 Elf4 protein_coding Interval_76974 chr17 85290012 85290333 + 0 NA intron (ENSMUSG00000071037.6, intron 3 of 10) protein_coding-intron (ENSMUSG00000071037.6, intron 3 of 10) 199566 ENSMUSG00000071037.6 ENSMUSG00000071037 ENSMUST00000234501 Camkmt protein_coding Interval_152029 chr7 128417393 128418816 + 0 NA promoter-TSS (ENSMUSG00000030844.11) protein_coding-promoter-TSS (ENSMUSG00000030844.11) 654 ENSMUSG00000030844.11 ENSMUSG00000030844 ENSMUST00000147840 Rgs10 protein_coding Interval_160546 chr8 110533901 110534806 + 0 NA intron (ENSMUSG00000059854.8, intron 47 of 86) protein_coding-intron (ENSMUSG00000059854.8, intron 47 of 86) 22509 ENSMUSG00000105825.1 ENSMUSG00000105825 ENSMUST00000104619 Gm44489 miRNA Interval_22858 chr11 16810471 16810688 + 0 NA intron (ENSMUSG00000020122.16, intron 1 of 15) protein_coding-intron (ENSMUSG00000020122.16, intron 1 of 27) 20123 ENSMUSG00000085091.1 ENSMUSG00000085091 ENSMUST00000150329 Egfros antisense Interval_85537 chr19 28186746 28187277 + 0 NA Intergenic Intergenic -40708 ENSMUSG00000117862.1 ENSMUSG00000117862 ENSMUST00000236360 Gm35781 processed_pseudogene Interval_120215 chr4 144335308 144336586 + 0 NA Intergenic Intergenic 5698 ENSMUSG00000078508.1 ENSMUSG00000078508 ENSMUST00000105751 Gm13128 protein_coding Interval_155764 chr8 37061983 37062907 + 0 NA Intergenic Intergenic 27864 ENSMUSG00000109817.1 ENSMUSG00000109817 ENSMUST00000211556 Gm10683 TEC Interval_135663 chr6 42692236 42693418 + 0 NA intron (ENSMUSG00000036667.14, intron 1 of 2) protein_coding-intron (ENSMUSG00000036667.14, intron 1 of 8) 17244 ENSMUSG00000036667.14 ENSMUSG00000036667 ENSMUST00000153952 Tcaf1 protein_coding Interval_148310 chr7 80424860 80425191 + 0 NA Intergenic Intergenic -4185 ENSMUSG00000081664.1 ENSMUSG00000081664 ENSMUST00000118776 Gm15544 processed_pseudogene Interval_11412 chr1 181815277 181815486 + 0 NA TTS (ENSMUSG00000004880.11) protein_coding-TTS (ENSMUSG00000004880.11) -1681 ENSMUSG00000064970.1 ENSMUSG00000064970 ENSMUST00000083036 Gm23690 snRNA Interval_164556 chr9 38631813 38632903 + 0 NA Intergenic Intergenic 15164 ENSMUSG00000057444.3 ENSMUSG00000057444 ENSMUST00000215191 Olfr915 polymorphic_pseudogene Interval_98214 chr2 149982228 149983862 + 0 NA intron (ENSMUSG00000074736.10, intron 3 of 3) protein_coding-intron (ENSMUSG00000074736.10, intron 4 of 4) 128531 ENSMUSG00000083055.1 ENSMUSG00000083055 ENSMUST00000119999 Gm14140 processed_pseudogene Interval_52260 chr14 41104908 41105381 + 0 NA promoter-TSS (ENSMUSG00000037798.7) protein_coding-promoter-TSS (ENSMUSG00000037798.7) 109 ENSMUSG00000037798.7 ENSMUSG00000037798 ENSMUST00000047286 Mat1a protein_coding Interval_138414 chr6 87997363 87998464 + 0 NA intron (ENSMUSG00000084950.7, intron 2 of 2) antisense-intron (ENSMUSG00000084950.7, intron 2 of 2) -3734 ENSMUSG00000108227.1 ENSMUSG00000108227 ENSMUST00000203702 4933412L11Rik TEC Interval_143113 chr6 149446012 149446513 + 0 NA intron (ENSMUSG00000003452.15, intron 1 of 9) protein_coding-intron (ENSMUSG00000003452.15, intron 1 of 9) -11789 ENSMUSG00000082072.1 ENSMUSG00000082072 ENSMUST00000119145 Gm15785 processed_pseudogene Interval_118285 chr4 130039776 130040055 + 0 NA intron (ENSMUSG00000085517.7, intron 1 of 3) antisense-intron (ENSMUSG00000085517.7, intron 1 of 6) -11411 ENSMUSG00000085517.7 ENSMUSG00000085517 ENSMUST00000156271 Gm12963 antisense Interval_24661 chr11 35732317 35732676 + 0 NA Intergenic Intergenic -36988 ENSMUSG00000018846.8 ENSMUSG00000018846 ENSMUST00000018990 Pank3 protein_coding Interval_5480 chr1 89144946 89145659 + 0 NA exon (ENSMUSG00000036206.12, exon 4 of 6) protein_coding-exon (ENSMUSG00000036206.12, exon 4 of 6) 48229 ENSMUSG00000102700.1 ENSMUSG00000102700 ENSMUST00000195426 Gm38312 TEC Interval_59468 chr15 53345457 53346827 + 0 NA promoter-TSS (ENSMUSG00000061731.9) protein_coding-promoter-TSS (ENSMUSG00000061731.9) -37777 ENSMUSG00000087805.2 ENSMUSG00000087805 ENSMUST00000157180 Gm27926 snRNA Interval_93671 chr2 75731508 75732403 + 0 NA Intergenic Intergenic -1783 ENSMUSG00000087527.1 ENSMUSG00000087527 ENSMUST00000123829 Gm13656 lincRNA Interval_145850 chr7 40388013 40388568 + 0 NA intron (ENSMUSG00000100650.1, intron 2 of 2) lincRNA-intron (ENSMUSG00000100650.1, intron 2 of 2) 24840 ENSMUSG00000087914.1 ENSMUSG00000087914 ENSMUST00000157289 Gm24910 misc_RNA Interval_92588 chr2 60911028 60912069 + 0 NA intron (ENSMUSG00000026970.16, intron 1 of 13) protein_coding-intron (ENSMUSG00000026970.16, intron 1 of 13) -30110 ENSMUSG00000026970.16 ENSMUSG00000026970 ENSMUST00000128866 Rbms1 protein_coding Interval_137241 chr6 70694166 70694382 + 0 NA Intergenic Intergenic -4175 ENSMUSG00000095351.2 ENSMUSG00000095351 ENSMUST00000103403 Igkv3-2 IG_V_gene Interval_89783 chr2 25413391 25413877 + 0 NA Intergenic Intergenic 10186 ENSMUSG00000015094.16 ENSMUSG00000015094 ENSMUST00000138651 Npdc1 protein_coding Interval_107906 chr3 116718733 116719422 + 0 NA Intergenic Intergenic -6865 ENSMUSG00000027957.13 ENSMUSG00000027957 ENSMUST00000169530 Slc35a3 protein_coding Interval_55882 chr14 101768387 101768933 + 0 NA intron (ENSMUSG00000033060.16, intron 1 of 30) protein_coding-intron (ENSMUSG00000033060.16, intron 1 of 30) -38845 ENSMUSG00000053821.4 ENSMUSG00000053821 ENSMUST00000066461 Gm9922 bidirectional_promoter_lncRNA Interval_40605 chr12 105983376 105983634 + 0 NA Intergenic Intergenic -42302 ENSMUSG00000021115.15 ENSMUSG00000021115 ENSMUST00000220629 Vrk1 protein_coding Interval_130868 chr5 132809826 132810156 + 0 NA Intergenic Intergenic 8313 ENSMUSG00000088123.1 ENSMUSG00000088123 ENSMUST00000157498 Gm25722 misc_RNA Interval_60793 chr15 76808532 76809307 + 0 NA intron (ENSMUSG00000033697.16, intron 1 of 2) protein_coding-intron (ENSMUSG00000033697.16, intron 1 of 11) 9251 ENSMUSG00000033697.16 ENSMUSG00000033697 ENSMUST00000176736 Arhgap39 protein_coding Interval_44894 chr13 49426732 49428373 + 0 NA intron (ENSMUSG00000021385.10, intron 2 of 13) protein_coding-intron (ENSMUSG00000021385.10, intron 1 of 12) 6274 ENSMUSG00000021385.10 ENSMUSG00000021385 ENSMUST00000021817 Ippk protein_coding Interval_44426 chr13 44771075 44771261 + 0 NA intron (ENSMUSG00000038518.15, intron 2 of 4) protein_coding-intron (ENSMUSG00000038518.15, intron 2 of 18) 39798 ENSMUSG00000038518.15 ENSMUSG00000038518 ENSMUST00000173003 Jarid2 protein_coding Interval_151955 chr7 127760886 127761639 + 0 NA exon (ENSMUSG00000030811.14, exon 8 of 11) protein_coding-exon (ENSMUSG00000030811.14, exon 8 of 11) -8553 ENSMUSG00000043964.14 ENSMUSG00000043964 ENSMUST00000121504 Orai3 protein_coding Interval_49218 chr13 109564763 109564936 + 0 NA intron (ENSMUSG00000021699.17, intron 1 of 14) protein_coding-intron (ENSMUSG00000021699.17, intron 1 of 14) 240105 ENSMUSG00000076946.2 ENSMUSG00000076946 ENSMUST00000103758 Mir582 miRNA Interval_113948 chr4 61709956 61710182 + 0 NA Intergenic Intergenic 11228 ENSMUSG00000083304.1 ENSMUSG00000083304 ENSMUST00000121741 Mup-ps15 unprocessed_pseudogene Interval_163926 chr9 28613149 28615982 + 0 NA intron (ENSMUSG00000062257.13, intron 1 of 2) protein_coding-intron (ENSMUSG00000062257.13, intron 1 of 6) 321817 ENSMUSG00000106021.1 ENSMUSG00000106021 ENSMUST00000199274 Gm44316 miRNA Interval_166460 chr9 59668243 59669420 + 0 NA TTS (ENSMUSG00000032294.17) protein_coding-TTS (ENSMUSG00000032294.17) -3983 ENSMUSG00000111394.1 ENSMUSG00000111394 ENSMUST00000214037 Gm49759 TEC Interval_59081 chr15 43257659 43257908 + 0 NA intron (ENSMUSG00000022336.3, intron 9 of 11) protein_coding-intron (ENSMUSG00000022336.3, intron 10 of 12) 21999 ENSMUSG00000022336.3 ENSMUSG00000022336 ENSMUST00000226415 Eif3e protein_coding Interval_82557 chr18 75147131 75147430 + 0 NA intron (ENSMUSG00000035765.10, intron 13 of 16) protein_coding-intron (ENSMUSG00000035765.10, intron 13 of 16) 21855 ENSMUSG00000035765.10 ENSMUSG00000035765 ENSMUST00000236840 Dym protein_coding Interval_24387 chr11 32867559 32868194 + 0 NA Intergenic Intergenic 13064 ENSMUSG00000083303.1 ENSMUSG00000083303 ENSMUST00000121601 Gm12110 processed_pseudogene Interval_24099 chr11 30229937 30230831 + 0 NA intron (ENSMUSG00000020315.18, intron 1 of 1) protein_coding-intron (ENSMUSG00000020315.18, intron 1 of 35) -37080 ENSMUSG00000073073.4 ENSMUSG00000073073 ENSMUST00000146985 Gm8098 processed_transcript Interval_164639 chr9 40227790 40228693 + 0 NA Intergenic Intergenic 35912 ENSMUSG00000025602.13 ENSMUSG00000025602 ENSMUST00000168832 Zfp202 protein_coding Interval_69178 chr16 91150849 91151146 + 0 NA intron (ENSMUSG00000116763.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000116763.1, intron 1 of 2) 8092 ENSMUSG00000116763.1 ENSMUSG00000116763 ENSMUST00000231396 Gm41492 lincRNA Interval_137380 chr6 71813586 71814476 + 0 NA exon (ENSMUSG00000052962.3, exon 4 of 4) protein_coding-exon (ENSMUSG00000052962.3, exon 4 of 4) 11143 ENSMUSG00000108594.1 ENSMUSG00000108594 ENSMUST00000205395 Gm44770 TEC Interval_54126 chr14 65529212 65529567 + 0 NA Intergenic Intergenic 63663 ENSMUSG00000022031.6 ENSMUSG00000022031 ENSMUST00000224743 Elp3 protein_coding Interval_45365 chr13 54672599 54673184 + 0 NA Intergenic Intergenic 14917 ENSMUSG00000034928.16 ENSMUSG00000034928 ENSMUST00000150626 Rnf44 protein_coding Interval_88479 chr2 5466497 5467025 + 0 NA intron (ENSMUSG00000039145.16, intron 2 of 2) protein_coding-intron (ENSMUSG00000039145.16, intron 2 of 10) -136810 ENSMUSG00000082013.1 ENSMUSG00000082013 ENSMUST00000117145 Gm13216 processed_pseudogene Interval_163360 chr9 21072767 21074008 + 0 NA promoter-TSS (ENSMUSG00000111692.1) protein_coding-promoter-TSS (ENSMUSG00000111692.1) 227 ENSMUSG00000079677.2 ENSMUSG00000079677 ENSMUST00000216484 Fdx2 protein_coding Interval_971 chr1 13568438 13569109 + 0 NA intron (ENSMUSG00000025935.10, intron 10 of 10) protein_coding-intron (ENSMUSG00000025935.10, intron 10 of 10) 21102 ENSMUSG00000025935.10 ENSMUSG00000025935 ENSMUST00000188377 Tram1 protein_coding Interval_51669 chr14 31239764 31240502 + 0 NA promoter-TSS (ENSMUSG00000021902.7) protein_coding-promoter-TSS (ENSMUSG00000021902.7) 10875 ENSMUSG00000021902.7 ENSMUSG00000021902 ENSMUST00000228140 Phf7 protein_coding Interval_16169 chr10 61201113 61201574 + 0 NA intron (ENSMUSG00000059901.12, intron 19 of 21) protein_coding-intron (ENSMUSG00000059901.12, intron 19 of 21) 26081 ENSMUSG00000020096.21 ENSMUSG00000020096 ENSMUST00000126831 Tbata protein_coding Interval_25267 chr11 45990320 45992347 + 0 NA intron (ENSMUSG00000040489.5, intron 3 of 4) protein_coding-intron (ENSMUSG00000040489.5, intron 3 of 4) 11023 ENSMUSG00000040489.5 ENSMUSG00000040489 ENSMUST00000049038 Sox30 protein_coding Interval_161521 chr8 120928264 120928485 + 0 NA intron (ENSMUSG00000092329.1, intron 1 of 15) protein_coding-intron (ENSMUSG00000092329.1, intron 1 of 15) 48168 ENSMUSG00000097087.1 ENSMUSG00000097087 ENSMUST00000181778 Gm26878 lincRNA Interval_106367 chr3 95667875 95668378 + 0 NA Intergenic Intergenic 9025 ENSMUSG00000015850.11 ENSMUSG00000015850 ENSMUST00000148854 Adamtsl4 protein_coding Interval_5938 chr1 93342523 93344017 + 0 NA promoter-TSS (ENSMUSG00000026274.11) protein_coding-promoter-TSS (ENSMUSG00000026274.11) -385 ENSMUSG00000026275.13 ENSMUSG00000026275 ENSMUST00000127141 Ppp1r7 protein_coding Interval_72055 chr17 27742648 27743955 + 0 NA Intergenic Intergenic 8081 ENSMUSG00000086485.2 ENSMUSG00000086485 ENSMUST00000156950 Gm15458 lincRNA Interval_51437 chr14 27507821 27509288 + 0 NA promoter-TSS (ENSMUSG00000046753.10) protein_coding-promoter-TSS (ENSMUSG00000046753.10) 19285 ENSMUSG00000088615.1 ENSMUSG00000088615 ENSMUST00000157990 Gm22485 snRNA Interval_95078 chr2 103741831 103742060 + 0 NA intron (ENSMUSG00000027185.15, intron 11 of 11) protein_coding-intron (ENSMUSG00000027185.15, intron 11 of 28) 19250 ENSMUSG00000027185.15 ENSMUSG00000027185 ENSMUST00000148798 Nat10 protein_coding Interval_131115 chr5 135226572 135227174 + 0 NA intron (ENSMUSG00000002748.7, intron 10 of 18) protein_coding-intron (ENSMUSG00000002748.7, intron 10 of 18) 18885 ENSMUSG00000080473.1 ENSMUSG00000080473 ENSMUST00000116823 Gm25315 miRNA Interval_19696 chr10 108167956 108168576 + 0 NA intron (ENSMUSG00000019907.10, intron 1 of 24) protein_coding-intron (ENSMUSG00000019907.10, intron 1 of 25) -25834 ENSMUSG00000112401.1 ENSMUSG00000112401 ENSMUST00000219675 Gm47999 processed_pseudogene Interval_68370 chr16 74753960 74754439 + 0 NA Intergenic Intergenic 121739 ENSMUSG00000116881.1 ENSMUSG00000116881 ENSMUST00000232678 Gm49674 TEC Interval_8193 chr1 136405090 136406435 + 0 NA Intergenic Intergenic 9732 ENSMUSG00000097403.2 ENSMUSG00000097403 ENSMUST00000194227 9230116N13Rik processed_transcript Interval_59409 chr15 52506663 52507150 + 0 NA Intergenic Intergenic 7250 ENSMUSG00000094481.1 ENSMUSG00000094481 ENSMUST00000178490 Gm23267 snoRNA Interval_170318 chr9 106891648 106892705 + 0 NA promoter-TSS (ENSMUSG00000032575.16) protein_coding-promoter-TSS (ENSMUSG00000032575.16) -259 ENSMUSG00000032575.16 ENSMUSG00000032575 ENSMUST00000162801 Manf protein_coding Interval_149016 chr7 92001904 92002287 + 0 NA intron (ENSMUSG00000052572.19, intron 9 of 21) protein_coding-intron (ENSMUSG00000052572.19, intron 10 of 22) -62498 ENSMUSG00000109191.1 ENSMUSG00000109191 ENSMUST00000208051 Gm45131 TEC Interval_1816 chr1 33974525 33975549 + 0 NA intron (ENSMUSG00000026131.20, intron 3 of 102) protein_coding-intron (ENSMUSG00000026131.20, intron 3 of 102) 6465 ENSMUSG00000084506.1 ENSMUSG00000084506 ENSMUST00000122557 Gm23792 snRNA Interval_27341 chr11 66694707 66695467 + 0 NA Intergenic Intergenic 131480 ENSMUSG00000080978.2 ENSMUSG00000080978 ENSMUST00000121380 Gm12297 processed_pseudogene Interval_30130 chr11 89531880 89532721 + 0 NA intron (ENSMUSG00000047773.15, intron 5 of 21) protein_coding-intron (ENSMUSG00000047773.15, intron 3 of 16) 229577 ENSMUSG00000085798.1 ENSMUSG00000085798 ENSMUST00000140754 Gm2018 lincRNA Interval_134013 chr6 17710509 17711479 + 0 NA TTS (ENSMUSG00000081077.1) processed_pseudogene-TTS (ENSMUSG00000081077.1) 213 ENSMUSG00000086409.3 ENSMUSG00000086409 ENSMUST00000141865 Gm13898 processed_pseudogene Interval_63425 chr15 100993093 100993328 + 0 NA intron (ENSMUSG00000023033.14, intron 9 of 9) protein_coding-intron (ENSMUSG00000023033.14, intron 12 of 26) 23088 ENSMUSG00000023033.14 ENSMUSG00000023033 ENSMUST00000201246 Scn8a protein_coding Interval_74873 chr17 57006441 57007780 + 0 NA exon (ENSMUSG00000002658.9, exon 5 of 13) protein_coding-exon (ENSMUSG00000002658.9, exon 5 of 13) 4178 ENSMUSG00000002658.9 ENSMUSG00000002658 ENSMUST00000002733 Gtf2f1 protein_coding Interval_131835 chr5 140223769 140224211 + 0 NA intron (ENSMUSG00000029554.15, intron 2 of 3) protein_coding-intron (ENSMUSG00000029554.15, intron 10 of 17) 14448 ENSMUSG00000087248.7 ENSMUSG00000087248 ENSMUST00000133999 Gm16120 antisense Interval_159581 chr8 95601547 95602789 + 0 NA intron (ENSMUSG00000110447.1, intron 2 of 3) lincRNA-intron (ENSMUSG00000110447.1, intron 3 of 4) 649 ENSMUSG00000110447.1 ENSMUSG00000110447 ENSMUST00000213069 Gm31518 lincRNA Interval_82642 chr18 75578406 75580189 + 0 NA intron (ENSMUSG00000052928.9, intron 6 of 11) protein_coding-intron (ENSMUSG00000052928.9, intron 6 of 11) 57976 ENSMUSG00000052928.9 ENSMUSG00000052928 ENSMUST00000235147 Ctif protein_coding Interval_99620 chr2 163632106 163632321 + 0 NA exon (ENSMUSG00000017707.9, exon 5 of 10) protein_coding-exon (ENSMUSG00000017707.9, exon 5 of 10) -12637 ENSMUSG00000058812.2 ENSMUSG00000058812 ENSMUST00000184724 0610039K10Rik antisense Interval_126734 chr5 92392102 92393801 + 0 NA promoter-TSS (ENSMUSG00000034842.16) protein_coding-promoter-TSS (ENSMUSG00000034842.16) -27466 ENSMUSG00000060183.6 ENSMUSG00000060183 ENSMUST00000077820 Cxcl11 polymorphic_pseudogene Interval_136606 chr6 56568206 56569744 + 0 NA exon (ENSMUSG00000004347.17, exon 1 of 19) protein_coding-exon (ENSMUSG00000004347.17, exon 1 of 19) 14871 ENSMUSG00000096087.1 ENSMUSG00000096087 ENSMUST00000104123 Gm24709 snoRNA Interval_1766 chr1 33643584 33643770 + 0 NA intron (ENSMUSG00000026134.11, intron 5 of 13) protein_coding-intron (ENSMUSG00000026134.11, intron 5 of 13) -14104 ENSMUSG00000102093.1 ENSMUSG00000102093 ENSMUST00000185377 Gm17813 processed_pseudogene Interval_126570 chr5 90338618 90340037 + 0 NA intron (ENSMUSG00000055204.15, intron 1 of 26) protein_coding-intron (ENSMUSG00000055204.15, intron 1 of 33) 26858 ENSMUSG00000055204.15 ENSMUSG00000055204 ENSMUST00000202226 Ankrd17 protein_coding Interval_164678 chr9 40530926 40532075 + 0 NA promoter-TSS (ENSMUSG00000040111.17) protein_coding-promoter-TSS (ENSMUSG00000040111.17) 345 ENSMUSG00000097205.1 ENSMUSG00000097205 ENSMUST00000181617 Gm17540 lincRNA Interval_22431 chr11 10003128 10003424 + 0 NA Intergenic Intergenic -236061 ENSMUSG00000082312.1 ENSMUSG00000082312 ENSMUST00000117538 Gm11996 processed_pseudogene Interval_19457 chr10 99524640 99525141 + 0 NA Intergenic Intergenic 13179 ENSMUSG00000112180.1 ENSMUSG00000112180 ENSMUST00000218632 Gm48085 processed_pseudogene Interval_6942 chr1 121123136 121124221 + 0 NA intron (ENSMUSG00000097881.7, intron 1 of 2) lincRNA-intron (ENSMUSG00000097881.7, intron 1 of 2) 36207 ENSMUSG00000097881.7 ENSMUSG00000097881 ENSMUST00000181183 Celrr lincRNA Interval_112507 chr4 41676372 41677482 + 0 NA intron (ENSMUSG00000028444.17, intron 2 of 3) protein_coding-intron (ENSMUSG00000028444.17, intron 2 of 4) -12893 ENSMUSG00000028444.17 ENSMUSG00000028444 ENSMUST00000145379 Cntfr protein_coding Interval_58250 chr15 31366074 31368188 + 0 NA exon (ENSMUSG00000022237.17, exon 1 of 3) protein_coding-exon (ENSMUSG00000022237.17, exon 1 of 3) -1231 ENSMUSG00000115406.1 ENSMUSG00000115406 ENSMUST00000227460 Gm49300 TEC Interval_125418 chr5 66918945 66919854 + 0 NA TTS (ENSMUSG00000106749.1) TEC-TTS (ENSMUSG00000106749.1) 3391 ENSMUSG00000106749.1 ENSMUSG00000106749 ENSMUST00000202522 Gm43281 TEC Interval_57632 chr15 12949969 12950546 + 0 NA Intergenic Intergenic -5465 ENSMUSG00000115807.1 ENSMUSG00000115807 ENSMUST00000226269 Gm49100 unprocessed_pseudogene Interval_51323 chr14 26398204 26399098 + 0 NA exon (ENSMUSG00000021874.12, exon 8 of 8) lincRNA-exon (ENSMUSG00000021874.12, exon 8 of 8) 9452 ENSMUSG00000090104.1 ENSMUSG00000090104 ENSMUST00000160089 Slmapos2 lincRNA Interval_89759 chr2 25252438 25252642 + 0 NA intron (ENSMUSG00000115074.1, intron 2 of 13) protein_coding-intron (ENSMUSG00000006471.18, intron 2 of 11) 2846 ENSMUSG00000006471.18 ENSMUSG00000006471 ENSMUST00000132128 Ndor1 protein_coding Interval_93220 chr2 71261797 71262087 + 0 NA intron (ENSMUSG00000027012.15, intron 15 of 15) protein_coding-intron (ENSMUSG00000027012.15, intron 15 of 15) 49938 ENSMUSG00000027012.15 ENSMUSG00000027012 ENSMUST00000138613 Dync1i2 protein_coding Interval_39547 chr12 90081656 90082947 + 0 NA intron (ENSMUSG00000066392.12, intron 2 of 5) protein_coding-intron (ENSMUSG00000066392.12, intron 15 of 19) 14202 ENSMUSG00000113055.1 ENSMUSG00000113055 ENSMUST00000221188 Gm48700 TEC Interval_128980 chr5 116432609 116434165 + 0 NA Intergenic Intergenic -5333 ENSMUSG00000086219.7 ENSMUSG00000086219 ENSMUST00000126959 Srrm4os antisense Interval_174858 chrY 1120134 1120473 + 0 NA intron (ENSMUSG00000068457.14, intron 25 of 27) protein_coding-intron (ENSMUSG00000068457.14, intron 24 of 26) 16878 ENSMUSG00000068457.14 ENSMUSG00000068457 ENSMUST00000154527 Uty protein_coding Interval_3920 chr1 64793098 64793390 + 0 NA TTS (ENSMUSG00000051344.13) protein_coding-TTS (ENSMUSG00000051344.13) 43520 ENSMUSG00000051344.13 ENSMUSG00000051344 ENSMUST00000134097 Plekhm3 protein_coding Interval_137624 chr6 76278446 76278629 + 0 NA Intergenic Intergenic -5879 ENSMUSG00000107770.1 ENSMUSG00000107770 ENSMUST00000204831 Gm44126 processed_pseudogene Interval_60984 chr15 78514520 78515148 + 0 NA Intergenic Intergenic -16275 ENSMUSG00000116307.1 ENSMUSG00000116307 ENSMUST00000230340 Gm49490 antisense Interval_63692 chr15 102885559 102886425 + 0 NA Intergenic Intergenic -35111 ENSMUSG00000001655.6 ENSMUSG00000001655 ENSMUST00000001700 Hoxc13 protein_coding Interval_119786 chr4 139982495 139982758 + 0 NA Intergenic Intergenic -14600 ENSMUSG00000078234.6 ENSMUSG00000078234 ENSMUST00000105031 Klhdc7a protein_coding Interval_51610 chr14 30691044 30691461 + 0 NA TTS (ENSMUSG00000052395.17) protein_coding-TTS (ENSMUSG00000052395.17) -25239 ENSMUSG00000006527.16 ENSMUSG00000006527 ENSMUST00000227445 Sfmbt1 protein_coding Interval_168961 chr9 89770705 89770989 + 0 NA Intergenic Intergenic 11844 ENSMUSG00000100523.1 ENSMUSG00000100523 ENSMUST00000190444 Gm29608 processed_pseudogene Interval_117345 chr4 123127270 123127508 + 0 NA TTS (ENSMUSG00000028651.12) protein_coding-TTS (ENSMUSG00000028651.12) 8065 ENSMUSG00000002384.2 ENSMUSG00000002384 ENSMUST00000151850 Bmp8b protein_coding Interval_20192 chr10 115572615 115572915 + 0 NA intron (ENSMUSG00000092210.1, intron 1 of 4) protein_coding-intron (ENSMUSG00000020140.15, intron 1 of 17) 2779 ENSMUSG00000092210.1 ENSMUSG00000092210 ENSMUST00000173620 A930009A15Rik protein_coding Interval_6981 chr1 121527217 121529032 + 0 NA exon (ENSMUSG00000050534.8, exon 1 of 2) protein_coding-exon (ENSMUSG00000050534.8, exon 1 of 2) 341 ENSMUSG00000050534.8 ENSMUSG00000050534 ENSMUST00000055884 Htr5b protein_coding Interval_49503 chr13 112481567 112482119 + 0 NA exon (ENSMUSG00000021756.12, exon 6 of 6) protein_coding-exon (ENSMUSG00000021756.12, exon 6 of 6) 6797 ENSMUSG00000021756.12 ENSMUSG00000021756 ENSMUST00000184949 Il6st protein_coding Interval_56097 chr14 105681669 105682153 + 0 NA promoter-TSS (ENSMUSG00000060143.7) lincRNA-promoter-TSS (ENSMUSG00000060143.7) 82 ENSMUSG00000060143.7 ENSMUSG00000060143 ENSMUST00000227553 Gm10076 lincRNA Interval_49256 chr13 109845150 109846075 + 0 NA intron (ENSMUSG00000021699.17, intron 6 of 15) protein_coding-intron (ENSMUSG00000021699.17, intron 5 of 14) -58197 ENSMUSG00000084651.1 ENSMUSG00000084651 ENSMUST00000122702 Mir1904 miRNA Interval_125587 chr5 72224433 72226189 + 0 NA intron (ENSMUSG00000046808.17, intron 1 of 2) polymorphic_pseudogene-intron (ENSMUSG00000046808.17, intron 1 of 22) 21982 ENSMUSG00000046808.17 ENSMUSG00000046808 ENSMUST00000146393 Atp10d polymorphic_pseudogene Interval_97024 chr2 130613242 130614052 + 0 NA TTS (ENSMUSG00000079043.3) protein_coding-TTS (ENSMUSG00000079043.3) 3021 ENSMUSG00000079043.3 ENSMUSG00000079043 ENSMUST00000179273 Fastkd5 protein_coding Interval_26770 chr11 60352524 60353433 + 0 NA promoter-TSS (ENSMUSG00000000538.18) protein_coding-promoter-TSS (ENSMUSG00000000538.18) -379 ENSMUSG00000056598.16 ENSMUSG00000056598 ENSMUST00000108722 Drc3 protein_coding Interval_15450 chr10 46814353 46815222 + 0 NA Intergenic Intergenic 23720 ENSMUSG00000065718.1 ENSMUSG00000065718 ENSMUST00000083784 Gm25650 snRNA Interval_80450 chr18 42309304 42309559 + 0 NA intron (ENSMUSG00000024491.16, intron 8 of 19) protein_coding-intron (ENSMUSG00000024491.16, intron 8 of 19) 7541 ENSMUSG00000092935.1 ENSMUSG00000092935 ENSMUST00000175194 Gm22697 miRNA Interval_145234 chr7 30819474 30820245 + 0 NA exon (ENSMUSG00000051314.11, exon 3 of 3) protein_coding-exon (ENSMUSG00000051314.11, exon 3 of 3) 1118 ENSMUSG00000051314.11 ENSMUSG00000051314 ENSMUST00000186059 Ffar2 protein_coding Interval_60707 chr15 76283099 76283644 + 0 NA intron (ENSMUSG00000049653.5, intron 1 of 4) protein_coding-intron (ENSMUSG00000049653.5, intron 1 of 4) 7597 ENSMUSG00000093169.1 ENSMUSG00000093169 ENSMUST00000175428 Mir3079 miRNA Interval_212 KQ030492.1 10247 11006 + 0 NA NA NA NA NA Interval_63432 chr15 101052577 101054233 + 0 NA exon (ENSMUSG00000095440.2, exon 1 of 1) protein_coding-exon (ENSMUSG00000095440.2, exon 1 of 1) -6008 ENSMUSG00000113558.1 ENSMUSG00000113558 ENSMUST00000222611 Tmdd1 protein_coding Interval_80455 chr18 42343025 42343778 + 0 NA Intergenic Intergenic 41511 ENSMUSG00000092935.1 ENSMUSG00000092935 ENSMUST00000175194 Gm22697 miRNA Interval_41984 chr13 5878190 5879313 + 0 NA Intergenic Intergenic -8358 ENSMUSG00000113757.1 ENSMUSG00000113757 ENSMUST00000221487 Gm47507 lincRNA Interval_41092 chr12 111127517 111127726 + 0 NA Intergenic Intergenic 36421 ENSMUSG00000113200.1 ENSMUSG00000113200 ENSMUST00000221105 Gm48632 TEC Interval_97161 chr2 131881858 131883904 + 0 NA Intergenic Intergenic -21205 ENSMUSG00000081229.1 ENSMUSG00000081229 ENSMUST00000119759 Lamr1-ps1 processed_pseudogene Interval_105361 chr3 85493109 85494071 + 0 NA intron (ENSMUSG00000102805.5, intron 3 of 9) protein_coding-intron (ENSMUSG00000102805.5, intron 3 of 9) 26213 ENSMUSG00000080424.1 ENSMUSG00000080424 ENSMUST00000116774 Mir466k miRNA Interval_90792 chr2 32631579 32631950 + 0 NA TTS (ENSMUSG00000026817.14) protein_coding-TTS (ENSMUSG00000026817.14) 6326 ENSMUSG00000026817.14 ENSMUSG00000026817 ENSMUST00000135392 Ak1 protein_coding Interval_135736 chr6 46081293 46081934 + 0 NA intron (ENSMUSG00000039419.17, intron 8 of 23) protein_coding-intron (ENSMUSG00000039419.17, intron 8 of 23) 5434 ENSMUSG00000108189.1 ENSMUSG00000108189 ENSMUST00000204727 Gm43887 TEC Interval_6102 chr1 96880212 96880505 + 0 NA exon (ENSMUSG00000097814.5, exon 2 of 2) antisense-exon (ENSMUSG00000097814.5, exon 2 of 2) 8125 ENSMUSG00000097814.5 ENSMUSG00000097814 ENSMUST00000202118 Panct2 antisense Interval_150492 chr7 111163704 111164568 + 0 NA Intergenic Intergenic -41452 ENSMUSG00000110424.1 ENSMUSG00000110424 ENSMUST00000210340 1700012D14Rik processed_transcript Interval_21234 chr10 127350327 127351575 + 0 NA exon (ENSMUSG00000047492.5, exon 2 of 2) protein_coding-exon (ENSMUSG00000047492.5, exon 2 of 2) 3460 ENSMUSG00000047492.5 ENSMUSG00000047492 ENSMUST00000059718 Inhbe protein_coding Interval_83844 chr19 5052421 5054029 + 0 NA exon (ENSMUSG00000024883.8, exon 7 of 10) protein_coding-exon (ENSMUSG00000024883.8, exon 7 of 10) 2399 ENSMUSG00000024883.8 ENSMUSG00000024883 ENSMUST00000224032 Rin1 protein_coding Interval_126236 chr5 83581276 83581491 + 0 NA Intergenic Intergenic 67571 ENSMUSG00000077288.1 ENSMUSG00000077288 ENSMUST00000104100 Gm25765 snoRNA Interval_94381 chr2 90636743 90637593 + 0 NA Intergenic Intergenic -48003 ENSMUSG00000051329.13 ENSMUSG00000051329 ENSMUST00000126503 Nup160 protein_coding Interval_91844 chr2 50188842 50189376 + 0 NA intron (ENSMUSG00000050447.15, intron 4 of 4) protein_coding-intron (ENSMUSG00000050447.15, intron 5 of 5) 60740 ENSMUSG00000050447.15 ENSMUSG00000050447 ENSMUST00000126337 Lypd6 protein_coding Interval_101966 chr3 13750043 13750366 + 0 NA exon (ENSMUSG00000103856.1, exon 1 of 1) processed_pseudogene-exon (ENSMUSG00000103856.1, exon 1 of 1) 250 ENSMUSG00000103856.1 ENSMUSG00000103856 ENSMUST00000195162 Gm2474 processed_pseudogene Interval_28328 chr11 75225070 75225604 + 0 NA intron (ENSMUSG00000045287.6, intron 1 of 1) protein_coding-intron (ENSMUSG00000045287.6, intron 1 of 1) 31554 ENSMUSG00000045287.6 ENSMUSG00000045287 ENSMUST00000102514 Rtn4rl1 protein_coding Interval_62460 chr15 93168836 93170234 + 0 NA Intergenic Intergenic -27060 ENSMUSG00000097989.1 ENSMUSG00000097989 ENSMUST00000182581 Gm4335 processed_pseudogene Interval_1146 chr1 16119398 16120389 + 0 NA intron (ENSMUSG00000025921.7, intron 2 of 5) protein_coding-intron (ENSMUSG00000025921.7, intron 2 of 5) -10609 ENSMUSG00000025921.7 ENSMUSG00000025921 ENSMUST00000152626 Rdh10 protein_coding Interval_29831 chr11 87148331 87148549 + 0 NA intron (ENSMUSG00000018548.15, intron 6 of 6) protein_coding-intron (ENSMUSG00000018548.15, intron 7 of 23) -21482 ENSMUSG00000085310.7 ENSMUSG00000085310 ENSMUST00000155828 Gm11491 antisense Interval_119680 chr4 139178031 139178716 + 0 NA exon (ENSMUSG00000073739.3, exon 2 of 3) antisense-exon (ENSMUSG00000073739.3, exon 2 of 3) 2282 ENSMUSG00000073739.3 ENSMUSG00000073739 ENSMUST00000097827 Gm16287 antisense Interval_119762 chr4 139788591 139788802 + 0 NA intron (ENSMUSG00000028736.13, intron 4 of 8) protein_coding-intron (ENSMUSG00000028736.13, intron 4 of 8) 44311 ENSMUSG00000028736.13 ENSMUSG00000028736 ENSMUST00000174681 Pax7 protein_coding Interval_39910 chr12 99627419 99628556 + 0 NA promoter-TSS (ENSMUSG00000100211.1) lincRNA-promoter-TSS (ENSMUSG00000100211.1) -13 ENSMUSG00000100211.1 ENSMUSG00000100211 ENSMUST00000185726 1700064M15Rik lincRNA Interval_166346 chr9 58474082 58474363 + 0 NA Intergenic Intergenic -14740 ENSMUSG00000066607.5 ENSMUSG00000066607 ENSMUST00000216294 Insyn1 protein_coding Interval_131100 chr5 135113684 135114380 + 0 NA intron (ENSMUSG00000005373.13, intron 2 of 3) protein_coding-intron (ENSMUSG00000005373.13, intron 2 of 16) 9261 ENSMUSG00000107296.1 ENSMUSG00000107296 ENSMUST00000201067 Gm43500 antisense Interval_129010 chr5 116689091 116689830 + 0 NA intron (ENSMUSG00000106909.1, intron 2 of 2) lincRNA-intron (ENSMUSG00000106909.1, intron 2 of 2) -55896 ENSMUSG00000107369.1 ENSMUSG00000107369 ENSMUST00000201478 Gstm2-ps1 processed_pseudogene Interval_46587 chr13 67403255 67405277 + 0 NA intron (ENSMUSG00000114726.1, intron 1 of 1) antisense-intron (ENSMUSG00000114726.1, intron 1 of 1) -4447 ENSMUSG00000078994.9 ENSMUSG00000078994 ENSMUST00000224825 Zfp429 protein_coding Interval_75905 chr17 72906955 72907771 + 0 NA Intergenic Intergenic -13825 ENSMUSG00000024063.13 ENSMUSG00000024063 ENSMUST00000148556 Lbh protein_coding Interval_50485 chr14 13982150 13982406 + 0 NA intron (ENSMUSG00000021738.5, intron 1 of 12) protein_coding-intron (ENSMUSG00000021738.5, intron 1 of 12) -24647 ENSMUSG00000053453.9 ENSMUSG00000053453 ENSMUST00000226008 Thoc7 protein_coding Interval_33073 chr11 114193643 114195006 + 0 NA Intergenic Intergenic -3934 ENSMUSG00000078600.1 ENSMUSG00000078600 ENSMUST00000106604 1700092K14Rik processed_transcript Interval_55867 chr14 101662962 101663353 + 0 NA intron (ENSMUSG00000022111.9, intron 2 of 8) protein_coding-intron (ENSMUSG00000022111.9, intron 2 of 8) 9132 ENSMUSG00000022111.9 ENSMUSG00000022111 ENSMUST00000226340 Uchl3 protein_coding Interval_62626 chr15 95772238 95774372 + 0 NA Intergenic Intergenic -2449 ENSMUSG00000043329.4 ENSMUSG00000043329 ENSMUST00000058951 Gm8849 processed_pseudogene Interval_92425 chr2 59657272 59657963 + 0 NA intron (ENSMUSG00000035168.16, intron 1 of 25) protein_coding-intron (ENSMUSG00000035168.16, intron 2 of 26) -92933 ENSMUSG00000081157.1 ENSMUSG00000081157 ENSMUST00000118837 Gm13552 processed_pseudogene Interval_64770 chr16 15604167 15605172 + 0 NA Intergenic Intergenic -4438 ENSMUSG00000116140.1 ENSMUSG00000116140 ENSMUST00000230520 Gm7748 processed_pseudogene Interval_1762 chr1 33615595 33617075 + 0 NA exon (ENSMUSG00000102714.1, exon 1 of 1) TEC-exon (ENSMUSG00000102714.1, exon 1 of 1) 497 ENSMUSG00000102714.1 ENSMUSG00000102714 ENSMUST00000192891 Gm37618 TEC Interval_130950 chr5 134221459 134222424 + 0 NA exon (ENSMUSG00000015950.13, exon 10 of 10) protein_coding-exon (ENSMUSG00000015950.13, exon 10 of 10) 281 ENSMUSG00000015950.13 ENSMUSG00000015950 ENSMUST00000126934 Ncf1 protein_coding Interval_25477 chr11 48833528 48834578 + 0 NA intron (ENSMUSG00000040350.16, intron 1 of 6) protein_coding-intron (ENSMUSG00000040350.16, intron 1 of 6) -3431 ENSMUSG00000040350.16 ENSMUSG00000040350 ENSMUST00000131270 Trim7 protein_coding Interval_76338 chr17 79199715 79200480 + 0 NA Intergenic Intergenic 57952 ENSMUSG00000117047.1 ENSMUSG00000117047 ENSMUST00000232946 Gm5230 processed_pseudogene Interval_51007 chr14 21581550 21581818 + 0 NA intron (ENSMUSG00000021767.19, intron 2 of 5) protein_coding-intron (ENSMUSG00000021767.19, intron 2 of 16) 64809 ENSMUSG00000021767.19 ENSMUSG00000021767 ENSMUST00000226589 Kat6b protein_coding Interval_168406 chr9 80099239 80099480 + 0 NA intron (ENSMUSG00000034252.14, intron 4 of 6) protein_coding-intron (ENSMUSG00000034252.14, intron 5 of 22) 22578 ENSMUSG00000084917.3 ENSMUSG00000084917 ENSMUST00000165458 Gm17477 antisense Interval_73261 chr17 35841082 35842220 + 0 NA promoter-TSS (ENSMUSG00000061607.15) protein_coding-promoter-TSS (ENSMUSG00000061607.15) -4591 ENSMUSG00000001525.10 ENSMUSG00000001525 ENSMUST00000156050 Tubb5 protein_coding Interval_159450 chr8 94812698 94813452 + 0 NA Intergenic Intergenic 2622 ENSMUSG00000031780.2 ENSMUSG00000031780 ENSMUST00000034232 Ccl17 protein_coding Interval_141307 chr6 127093300 127093522 + 0 NA intron (ENSMUSG00000038028.9, intron 1 of 4) protein_coding-intron (ENSMUSG00000038028.9, intron 2 of 5) -6886 ENSMUSG00000097525.2 ENSMUSG00000097525 ENSMUST00000180653 Platr31 antisense Interval_119944 chr4 141046638 141047232 + 0 NA TTS (ENSMUSG00000040860.16) protein_coding-TTS (ENSMUSG00000040860.16) 11264 ENSMUSG00000040860.16 ENSMUSG00000040860 ENSMUST00000144196 Crocc protein_coding Interval_57770 chr15 19377484 19378468 + 0 NA intron (ENSMUSG00000114971.1, intron 2 of 3) lincRNA-intron (ENSMUSG00000114971.1, intron 2 of 3) 17446 ENSMUSG00000114971.1 ENSMUSG00000114971 ENSMUST00000228706 Gm49162 lincRNA Interval_165674 chr9 50854134 50854345 + 0 NA intron (ENSMUSG00000032058.14, intron 1 of 3) protein_coding-intron (ENSMUSG00000032058.14, intron 1 of 3) -18773 ENSMUSG00000032058.14 ENSMUSG00000032058 ENSMUST00000176414 Ppp2r1b protein_coding Interval_166203 chr9 57483005 57483432 + 0 NA promoter-TSS (ENSMUSG00000074280.6) processed_pseudogene-promoter-TSS (ENSMUSG00000074280.6) 242 ENSMUSG00000111380.1 ENSMUSG00000111380 ENSMUST00000214169 D9Wsu149 processed_pseudogene Interval_9396 chr1 156779188 156779447 + 0 NA Intergenic Intergenic -14195 ENSMUSG00000046057.4 ENSMUSG00000046057 ENSMUST00000121352 Gm15428 processed_pseudogene Interval_95356 chr2 106865338 106866743 + 0 NA intron (ENSMUSG00000016386.15, intron 6 of 6) protein_coding-intron (ENSMUSG00000016386.15, intron 6 of 6) -50731 ENSMUSG00000085530.1 ENSMUSG00000085530 ENSMUST00000137252 Gm13901 processed_pseudogene Interval_162112 chr8 125247115 125247673 + 0 NA intron (ENSMUSG00000043051.17, intron 12 of 13) protein_coding-intron (ENSMUSG00000043051.17, intron 11 of 12) -20071 ENSMUSG00000086694.1 ENSMUSG00000086694 ENSMUST00000156666 Gm16237 antisense Interval_23916 chr11 28283200 28283502 + 0 NA Intergenic Intergenic 56463 ENSMUSG00000032889.7 ENSMUSG00000032889 ENSMUST00000042595 Gm6685 processed_pseudogene Interval_116392 chr4 111331344 111331677 + 0 NA intron (ENSMUSG00000061298.14, intron 2 of 6) protein_coding-intron (ENSMUSG00000061298.14, intron 6 of 12) -10905 ENSMUSG00000083904.1 ENSMUSG00000083904 ENSMUST00000117305 Gm12805 processed_pseudogene Interval_112780 chr4 44952982 44953727 + 0 NA Intergenic Intergenic 9601 ENSMUSG00000084854.1 ENSMUSG00000084854 ENSMUST00000154177 Gm12678 lincRNA Interval_173803 chrX 104602105 104602305 + 0 NA intron (ENSMUSG00000033906.5, intron 2 of 11) protein_coding-intron (ENSMUSG00000033906.5, intron 2 of 11) -14660 ENSMUSG00000089171.1 ENSMUSG00000089171 ENSMUST00000158546 Gm22430 snoRNA Interval_107634 chr3 109047887 109048119 + 0 NA Intergenic Intergenic -7631 ENSMUSG00000105371.1 ENSMUSG00000105371 ENSMUST00000200208 Gm44384 miRNA Interval_24831 chr11 40043519 40043788 + 0 NA intron (ENSMUSG00000085301.1, intron 2 of 7) lincRNA-intron (ENSMUSG00000085301.1, intron 2 of 7) 35459 ENSMUSG00000085301.1 ENSMUSG00000085301 ENSMUST00000130945 Gm12132 lincRNA Interval_78806 chr18 20732156 20733238 + 0 NA intron (ENSMUSG00000056124.5, intron 1 of 8) protein_coding-intron (ENSMUSG00000056124.5, intron 1 of 8) 13707 ENSMUSG00000056124.5 ENSMUSG00000056124 ENSMUST00000070080 B4galt6 protein_coding Interval_167348 chr9 67659265 67659496 + 0 NA Intergenic Intergenic -40801 ENSMUSG00000111819.1 ENSMUSG00000111819 ENSMUST00000216655 Gm47110 processed_pseudogene Interval_20090 chr10 114095404 114095707 + 0 NA promoter-TSS (ENSMUSG00000112921.1) TEC-promoter-TSS (ENSMUSG00000112921.1) -172 ENSMUSG00000112921.1 ENSMUSG00000112921 ENSMUST00000218197 Gm48104 TEC Interval_93727 chr2 76250160 76251622 + 0 NA intron (ENSMUSG00000075270.11, intron 2 of 19) protein_coding-intron (ENSMUSG00000075270.11, intron 2 of 19) -35497 ENSMUSG00000075270.11 ENSMUSG00000075270 ENSMUST00000144892 Pde11a protein_coding Interval_159383 chr8 94199216 94199928 + 0 NA Intergenic Intergenic 16283 ENSMUSG00000110524.1 ENSMUSG00000110524 ENSMUST00000212456 Gm39228 lincRNA Interval_92896 chr2 68282283 68283619 + 0 NA intron (ENSMUSG00000027030.15, intron 7 of 10) protein_coding-intron (ENSMUSG00000027030.15, intron 14 of 17) 103730 ENSMUSG00000027030.15 ENSMUSG00000027030 ENSMUST00000149581 Stk39 protein_coding Interval_165347 chr9 46479513 46480677 + 0 NA Intergenic Intergenic 24978 ENSMUSG00000111115.1 ENSMUSG00000111115 ENSMUST00000214085 Gm47144 lincRNA Interval_153047 chr7 141047134 141048984 + 0 NA Intergenic Intergenic -3530 ENSMUSG00000109703.1 ENSMUSG00000109703 ENSMUST00000210199 Gm45299 transcribed_processed_pseudogene Interval_135744 chr6 46299590 46299814 + 0 NA intron (ENSMUSG00000039419.17, intron 2 of 4) protein_coding-intron (ENSMUSG00000039419.17, intron 10 of 23) -114054 ENSMUSG00000107442.1 ENSMUSG00000107442 ENSMUST00000203051 Gm43881 TEC Interval_59758 chr15 59068328 59069595 + 0 NA intron (ENSMUSG00000022353.10, intron 1 of 2) protein_coding-intron (ENSMUSG00000022353.10, intron 1 of 14) 13044 ENSMUSG00000022353.10 ENSMUSG00000022353 ENSMUST00000227797 Mtss1 protein_coding Interval_153644 chr8 4237705 4239463 + 0 NA promoter-TSS (ENSMUSG00000002948.19) protein_coding-promoter-TSS (ENSMUSG00000002948.19) -281 ENSMUSG00000109061.1 ENSMUSG00000109061 ENSMUST00000145165 Gm49320 protein_coding Interval_41386 chr12 113217426 113218191 + 0 NA Intergenic Intergenic 3659 ENSMUSG00000087842.1 ENSMUSG00000087842 ENSMUST00000157217 Gm25622 snRNA Interval_25422 chr11 48079490 48079692 + 0 NA Intergenic Intergenic -167046 ENSMUSG00000065804.1 ENSMUSG00000065804 ENSMUST00000083870 Gm23039 snRNA Interval_105627 chr3 88230887 88232017 + 0 NA Intergenic Intergenic -15756 ENSMUSG00000092876.1 ENSMUSG00000092876 ENSMUST00000175135 Gm25641 miRNA Interval_126003 chr5 76769003 76769254 + 0 NA intron (ENSMUSG00000036377.19, intron 2 of 3) protein_coding-intron (ENSMUSG00000036377.19, intron 2 of 10) -26615 ENSMUSG00000083874.1 ENSMUSG00000083874 ENSMUST00000121248 Gm7494 processed_pseudogene Interval_2328 chr1 38093103 38093598 + 0 NA intron (ENSMUSG00000026082.11, intron 5 of 5) protein_coding-intron (ENSMUSG00000026082.11, intron 4 of 22) -16045 ENSMUSG00000103804.1 ENSMUSG00000103804 ENSMUST00000195028 Gm37062 sense_intronic Interval_102834 chr3 31902214 31904434 + 0 NA intron (ENSMUSG00000037610.15, intron 2 of 5) protein_coding-intron (ENSMUSG00000037610.15, intron 1 of 4) -51440 ENSMUSG00000103539.1 ENSMUSG00000103539 ENSMUST00000194517 Gm37834 TEC Interval_92134 chr2 53844731 53845313 + 0 NA Intergenic Intergenic -144067 ENSMUSG00000088628.1 ENSMUSG00000088628 ENSMUST00000158003 Gm23315 snoRNA Interval_165550 chr9 49365468 49366594 + 0 NA intron (ENSMUSG00000032259.8, intron 1 of 7) protein_coding-intron (ENSMUSG00000032259.8, intron 1 of 7) 25404 ENSMUSG00000032259.8 ENSMUSG00000032259 ENSMUST00000075764 Drd2 protein_coding Interval_125235 chr5 65574534 65575246 + 0 NA intron (ENSMUSG00000029203.16, intron 3 of 4) protein_coding-intron (ENSMUSG00000029203.16, intron 3 of 6) 5507 ENSMUSG00000029203.16 ENSMUSG00000029203 ENSMUST00000202572 Ube2k protein_coding Interval_54874 chr14 75932268 75932694 + 0 NA intron (ENSMUSG00000067995.4, intron 5 of 7) protein_coding-intron (ENSMUSG00000067995.4, intron 5 of 7) -22528 ENSMUSG00000046523.5 ENSMUSG00000046523 ENSMUST00000050120 Kctd4 protein_coding Interval_128526 chr5 113828205 113828931 + 0 NA exon (ENSMUSG00000048163.13, exon 1 of 1) protein_coding-exon (ENSMUSG00000048163.13, exon 1 of 1) -9251 ENSMUSG00000048163.13 ENSMUSG00000048163 ENSMUST00000198891 Selplg protein_coding Interval_85097 chr19 22800651 22801065 + 0 NA intron (ENSMUSG00000052387.16, intron 8 of 24) protein_coding-intron (ENSMUSG00000052387.16, intron 8 of 26) 50253 ENSMUSG00000065507.3 ENSMUSG00000065507 ENSMUST00000083573 Mir204 miRNA Interval_42605 chr13 16645330 16646126 + 0 NA Intergenic Intergenic -6238 ENSMUSG00000113862.1 ENSMUSG00000113862 ENSMUST00000221660 Gm7537 processed_pseudogene Interval_88736 chr2 10090382 10090816 + 0 NA intron (ENSMUSG00000037262.7, intron 3 of 3) protein_coding-intron (ENSMUSG00000037262.7, intron 4 of 4) 302 ENSMUSG00000037262.7 ENSMUSG00000037262 ENSMUST00000142773 Kin protein_coding Interval_96641 chr2 126736929 126737156 + 0 NA intron (ENSMUSG00000027363.15, intron 8 of 18) protein_coding-intron (ENSMUSG00000027363.15, intron 8 of 18) -27485 ENSMUSG00000074846.3 ENSMUSG00000074846 ENSMUST00000188689 Gm10774 processed_pseudogene Interval_66932 chr16 38593413 38596180 + 0 NA Intergenic Intergenic -21496 ENSMUSG00000091238.1 ENSMUSG00000091238 ENSMUST00000168897 Gm17103 antisense Interval_117729 chr4 125871173 125871566 + 0 NA Intergenic Intergenic 51048 ENSMUSG00000085562.7 ENSMUSG00000085562 ENSMUST00000144539 2610028E06Rik lincRNA Interval_44523 chr13 45694189 45696252 + 0 NA intron (ENSMUSG00000046876.16, intron 5 of 6) protein_coding-intron (ENSMUSG00000046876.16, intron 6 of 7) -54352 ENSMUSG00000114131.1 ENSMUSG00000114131 ENSMUST00000221126 Gm47460 antisense Interval_84482 chr19 11763947 11765167 + 0 NA Intergenic Intergenic -5855 ENSMUSG00000024683.6 ENSMUSG00000024683 ENSMUST00000237728 Mrpl16 protein_coding Interval_57567 chr15 12430564 12430788 + 0 NA intron (ENSMUSG00000022197.16, intron 5 of 7) protein_coding-intron (ENSMUSG00000022197.16, intron 5 of 23) -18296 ENSMUSG00000022197.16 ENSMUSG00000022197 ENSMUST00000189746 Pdzd2 protein_coding Interval_113846 chr4 59319206 59319715 + 0 NA intron (ENSMUSG00000038578.15, intron 15 of 16) protein_coding-intron (ENSMUSG00000038578.15, intron 15 of 16) -3494 ENSMUSG00000038578.15 ENSMUSG00000038578 ENSMUST00000136077 Susd1 protein_coding Interval_29085 chr11 80220174 80220398 + 0 NA exon (ENSMUSG00000017686.17, exon 2 of 20) protein_coding-exon (ENSMUSG00000017686.17, exon 2 of 20) -34415 ENSMUSG00000017686.17 ENSMUSG00000017686 ENSMUST00000236882 Rhot1 protein_coding Interval_79333 chr18 30639086 30639300 + 0 NA Intergenic Intergenic -30303 ENSMUSG00000117526.1 ENSMUSG00000117526 ENSMUST00000235078 Gm41780 processed_pseudogene Interval_29107 chr11 80377469 80378593 + 0 NA promoter-TSS (ENSMUSG00000057181.15) protein_coding-promoter-TSS (ENSMUSG00000057181.15) -16 ENSMUSG00000057181.15 ENSMUSG00000057181 ENSMUST00000134274 5730455P16Rik protein_coding Interval_114448 chr4 77642126 77642333 + 0 NA intron (ENSMUSG00000028399.18, intron 2 of 6) protein_coding-intron (ENSMUSG00000028399.18, intron 2 of 14) -569726 ENSMUSG00000092492.1 ENSMUSG00000092492 ENSMUST00000173049 B230208B08Rik processed_transcript Interval_58533 chr15 35866443 35866977 + 0 NA intron (ENSMUSG00000037646.10, intron 43 of 61) protein_coding-intron (ENSMUSG00000037646.10, intron 43 of 61) -5012 ENSMUSG00000037646.10 ENSMUSG00000037646 ENSMUST00000228738 Vps13b protein_coding Interval_45767 chr13 57879782 57881084 + 0 NA intron (ENSMUSG00000056222.15, intron 2 of 10) protein_coding-intron (ENSMUSG00000056222.15, intron 1 of 9) 27899 ENSMUSG00000056222.15 ENSMUSG00000056222 ENSMUST00000185905 Spock1 protein_coding Interval_42071 chr13 7531905 7532665 + 0 NA Intergenic Intergenic 85776 ENSMUSG00000113225.1 ENSMUSG00000113225 ENSMUST00000221383 Gm36074 lincRNA Interval_122462 chr5 23110050 23110709 + 0 NA intron (ENSMUSG00000106379.1, intron 2 of 2) protein_coding-intron (ENSMUSG00000106379.1, intron 2 of 2) 113417 ENSMUSG00000104866.1 ENSMUSG00000104866 ENSMUST00000199085 Gm42948 antisense Interval_60937 chr15 78003820 78004380 + 0 NA intron (ENSMUSG00000019146.2, intron 2 of 3) protein_coding-intron (ENSMUSG00000019146.2, intron 2 of 3) -40328 ENSMUSG00000016554.9 ENSMUSG00000016554 ENSMUST00000229713 Eif3d protein_coding Interval_49321 chr13 110747154 110747485 + 0 NA Intergenic Intergenic 63407 ENSMUSG00000114775.1 ENSMUSG00000114775 ENSMUST00000225669 Gm33172 lincRNA Interval_51820 chr14 32491540 32491725 + 0 NA Intergenic Intergenic -25675 ENSMUSG00000021919.8 ENSMUSG00000021919 ENSMUST00000228511 Chat protein_coding Interval_8885 chr1 151820605 151820848 + 0 NA exon (ENSMUSG00000043019.12, exon 20 of 20) protein_coding-exon (ENSMUSG00000043019.12, exon 20 of 20) 34229 ENSMUSG00000084557.1 ENSMUSG00000084557 ENSMUST00000122608 Gm25279 snRNA Interval_16685 chr10 67029056 67029400 + 0 NA exon (ENSMUSG00000112925.1, exon 1 of 1) antisense-exon (ENSMUSG00000112925.1, exon 1 of 1) 8094 ENSMUSG00000019873.8 ENSMUSG00000019873 ENSMUST00000219431 Reep3 protein_coding Interval_49043 chr13 107209246 107209453 + 0 NA Intergenic Intergenic 70842 ENSMUSG00000114475.1 ENSMUSG00000114475 ENSMUST00000223896 Gm2726 processed_pseudogene Interval_161007 chr8 116872484 116873437 + 0 NA Intergenic Intergenic 21564 ENSMUSG00000014633.15 ENSMUSG00000014633 ENSMUST00000128304 Cmc2 protein_coding Interval_72594 chr17 30880556 30881256 + 0 NA intron (ENSMUSG00000118281.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000118281.1, intron 1 of 2) 435 ENSMUSG00000118281.1 ENSMUSG00000118281 ENSMUST00000235757 Gm50242 lincRNA Interval_120948 chr4 151880181 151882588 + 0 NA Intergenic Intergenic -19680 ENSMUSG00000014592.21 ENSMUSG00000014592 ENSMUST00000135780 Camta1 protein_coding Interval_36397 chr12 43286482 43286929 + 0 NA Intergenic Intergenic -19438 ENSMUSG00000112904.1 ENSMUSG00000112904 ENSMUST00000217732 Gm47030 lincRNA Interval_151913 chr7 127498299 127499070 + 0 NA Intergenic Intergenic 7842 ENSMUSG00000105918.1 ENSMUSG00000105918 ENSMUST00000196180 Gm47278 miRNA Interval_42469 chr13 13841279 13842208 + 0 NA promoter-TSS (ENSMUSG00000113493.1) processed_pseudogene-promoter-TSS (ENSMUSG00000113493.1) -499 ENSMUSG00000113493.1 ENSMUSG00000113493 ENSMUST00000220697 Gm7441 processed_pseudogene Interval_37038 chr12 56691544 56692092 + 0 NA promoter-TSS (ENSMUSG00000001497.18) protein_coding-promoter-TSS (ENSMUSG00000001497.18) 51 ENSMUSG00000001497.18 ENSMUSG00000001497 ENSMUST00000152848 Pax9 protein_coding Interval_85983 chr19 34652546 34653059 + 0 NA Intergenic Intergenic 11931 ENSMUSG00000034459.8 ENSMUSG00000034459 ENSMUST00000102824 Ifit1 protein_coding Interval_157452 chr8 70466539 70467350 + 0 NA intron (ENSMUSG00000055707.13, intron 1 of 2) protein_coding-intron (ENSMUSG00000055707.13, intron 1 of 2) 10005 ENSMUSG00000055707.13 ENSMUSG00000055707 ENSMUST00000209567 Klhl26 protein_coding Interval_71790 chr17 26109994 26112130 + 0 NA Intergenic Intergenic -2281 ENSMUSG00000024180.14 ENSMUSG00000024180 ENSMUST00000236047 Tmem8 protein_coding Interval_73724 chr17 43001468 43002176 + 0 NA Intergenic Intergenic -14746 ENSMUSG00000023915.5 ENSMUSG00000023915 ENSMUST00000233482 Tnfrsf21 protein_coding Interval_21419 chr10 128492944 128494691 + 0 NA promoter-TSS (ENSMUSG00000090841.2) protein_coding-promoter-TSS (ENSMUSG00000090841.2) 12 ENSMUSG00000090841.2 ENSMUSG00000090841 ENSMUST00000217913 Myl6 protein_coding Interval_3533 chr1 59399449 59400312 + 0 NA Intergenic Intergenic 20950 ENSMUSG00000099922.1 ENSMUSG00000099922 ENSMUST00000187523 Gm29016 lincRNA Interval_117312 chr4 122912762 122913021 + 0 NA Intergenic Intergenic -12942 ENSMUSG00000080929.1 ENSMUSG00000080929 ENSMUST00000119358 Gm12891 processed_pseudogene Interval_57936 chr15 25632599 25634141 + 0 NA intron (ENSMUSG00000022272.17, intron 1 of 21) protein_coding-intron (ENSMUSG00000022272.17, intron 1 of 40) -1257 ENSMUSG00000115252.1 ENSMUSG00000115252 ENSMUST00000228949 Gm48996 TEC Interval_136125 chr6 51362610 51363288 + 0 NA Intergenic Intergenic -16761 ENSMUSG00000107660.1 ENSMUSG00000107660 ENSMUST00000204678 Gm6559 lincRNA Interval_9259 chr1 155574722 155576659 + 0 NA intron (ENSMUSG00000033701.13, intron 3 of 7) protein_coding-intron (ENSMUSG00000033701.13, intron 3 of 7) 12573 ENSMUSG00000033701.13 ENSMUSG00000033701 ENSMUST00000192730 Acbd6 protein_coding Interval_40768 chr12 108255434 108255674 + 0 NA intron (ENSMUSG00000084883.2, intron 1 of 5) protein_coding-intron (ENSMUSG00000084883.2, intron 1 of 6) 19871 ENSMUSG00000084883.2 ENSMUSG00000084883 ENSMUST00000136175 Ccdc85c protein_coding Interval_116443 chr4 112164270 112164911 + 0 NA intron (ENSMUSG00000055960.12, intron 10 of 10) protein_coding-intron (ENSMUSG00000055960.12, intron 10 of 10) -18358 ENSMUSG00000082638.1 ENSMUSG00000082638 ENSMUST00000121737 Gm12815 processed_pseudogene Interval_16642 chr10 66770871 66771133 + 0 NA Intergenic Intergenic 11548 ENSMUSG00000112383.1 ENSMUSG00000112383 ENSMUST00000220363 Gm47895 lincRNA Interval_118878 chr4 134229028 134229560 + 0 NA TTS (ENSMUSG00000028841.14) protein_coding-TTS (ENSMUSG00000028841.14) 1141 ENSMUSG00000028841.14 ENSMUSG00000028841 ENSMUST00000124181 Cnksr1 protein_coding Interval_73621 chr17 41249954 41250193 + 0 NA Intergenic Intergenic -95924 ENSMUSG00000098030.1 ENSMUSG00000098030 ENSMUST00000182716 Gm6771 processed_pseudogene Interval_63154 chr15 99420600 99421807 + 0 NA TTS (ENSMUSG00000023009.14) protein_coding-TTS (ENSMUSG00000023009.14) -6498 ENSMUSG00000089968.1 ENSMUSG00000089968 ENSMUST00000159738 Nckap5los antisense Interval_19945 chr10 111437516 111437961 + 0 NA Intergenic Intergenic -35489 ENSMUSG00000058799.16 ENSMUSG00000058799 ENSMUST00000219718 Nap1l1 protein_coding Interval_84838 chr19 17350275 17350952 + 0 NA intron (ENSMUSG00000038843.18, intron 1 of 2) protein_coding-intron (ENSMUSG00000038843.18, intron 1 of 1) 22231 ENSMUSG00000038843.18 ENSMUSG00000038843 ENSMUST00000174137 Gcnt1 protein_coding Interval_94530 chr2 91965456 91965937 + 0 NA promoter-TSS (ENSMUSG00000040479.12) protein_coding-promoter-TSS (ENSMUSG00000040479.12) -96 ENSMUSG00000040479.12 ENSMUSG00000040479 ENSMUST00000126473 Dgkz protein_coding Interval_111255 chr4 16066338 16066549 + 0 NA Intergenic Intergenic -52647 ENSMUSG00000041153.9 ENSMUSG00000041153 ENSMUST00000124770 Osgin2 protein_coding Interval_17460 chr10 77016324 77017014 + 0 NA exon (ENSMUSG00000074919.2, exon 2 of 3) lincRNA-exon (ENSMUSG00000074919.2, exon 2 of 3) 4674 ENSMUSG00000074919.2 ENSMUSG00000074919 ENSMUST00000099552 Gm10787 lincRNA Interval_137992 chr6 84025655 84026130 + 0 NA intron (ENSMUSG00000033788.15, intron 1 of 55) protein_coding-intron (ENSMUSG00000033788.15, intron 1 of 54) -5696 ENSMUSG00000108142.1 ENSMUSG00000108142 ENSMUST00000203282 Gm7498 processed_pseudogene Interval_104387 chr3 64987500 64987946 + 0 NA intron (ENSMUSG00000027827.17, intron 1 of 13) protein_coding-intron (ENSMUSG00000027827.17, intron 1 of 1) 10305 ENSMUSG00000027827.17 ENSMUSG00000027827 ENSMUST00000161956 Kcnab1 protein_coding Interval_167203 chr9 66135898 66136386 + 0 NA intron (ENSMUSG00000032381.5, intron 3 of 4) protein_coding-intron (ENSMUSG00000032381.5, intron 3 of 4) 9531 ENSMUSG00000032381.5 ENSMUSG00000032381 ENSMUST00000034945 Ciao2a protein_coding Interval_102502 chr3 27239355 27239940 + 0 NA TTS (ENSMUSG00000027698.14) protein_coding-TTS (ENSMUSG00000027698.14) -38413 ENSMUSG00000102186.1 ENSMUSG00000102186 ENSMUST00000193346 Gm37191 processed_pseudogene Interval_162955 chr9 13701663 13701952 + 0 NA intron (ENSMUSG00000031925.17, intron 2 of 3) protein_coding-intron (ENSMUSG00000031925.17, intron 2 of 3) 25635 ENSMUSG00000111698.1 ENSMUSG00000111698 ENSMUST00000215676 Gm47105 processed_pseudogene Interval_140033 chr6 113549214 113549440 + 0 NA exon (ENSMUSG00000034023.16, exon 13 of 44) protein_coding-exon (ENSMUSG00000034023.16, exon 13 of 44) 15538 ENSMUSG00000107786.1 ENSMUSG00000107786 ENSMUST00000204537 Gm44232 processed_pseudogene Interval_47138 chr13 76196309 76196785 + 0 NA Intergenic Intergenic -2444 ENSMUSG00000114664.1 ENSMUSG00000114664 ENSMUST00000225364 Gm48639 TEC Interval_132540 chr5 146073814 146074287 + 0 NA Intergenic Intergenic 3144 ENSMUSG00000105390.1 ENSMUSG00000105390 ENSMUST00000196658 Gm8458 processed_pseudogene Interval_21728 chr11 3982811 3984922 + 0 NA intron (ENSMUSG00000049721.14, intron 1 of 2) protein_coding-intron (ENSMUSG00000049721.14, intron 1 of 3) -6067 ENSMUSG00000049721.14 ENSMUSG00000049721 ENSMUST00000109981 Gal3st1 protein_coding Interval_39886 chr12 99362510 99362779 + 0 NA promoter-TSS (ENSMUSG00000113106.1) TEC-promoter-TSS (ENSMUSG00000113106.1) -616 ENSMUSG00000113106.1 ENSMUSG00000113106 ENSMUST00000221888 Gm47139 TEC Interval_138884 chr6 92920779 92920978 + 0 NA intron (ENSMUSG00000030022.14, intron 3 of 39) protein_coding-intron (ENSMUSG00000030022.14, intron 3 of 39) -19700 ENSMUSG00000097462.7 ENSMUSG00000097462 ENSMUST00000204609 9530026P05Rik antisense Interval_52478 chr14 46831583 46832660 + 0 NA promoter-TSS (ENSMUSG00000055128.15) protein_coding-promoter-TSS (ENSMUSG00000055128.15) -94 ENSMUSG00000061510.3 ENSMUSG00000061510 ENSMUST00000074862 Gm10101 bidirectional_promoter_lncRNA Interval_30056 chr11 88919276 88921070 + 0 NA intron (ENSMUSG00000087338.2, intron 2 of 4) antisense-intron (ENSMUSG00000087338.2, intron 2 of 4) 14245 ENSMUSG00000087338.2 ENSMUSG00000087338 ENSMUST00000139592 Scpep1os antisense Interval_113252 chr4 52361564 52362241 + 0 NA exon (ENSMUSG00000083338.1, exon 1 of 1) processed_pseudogene-exon (ENSMUSG00000083338.1, exon 1 of 1) 309 ENSMUSG00000083338.1 ENSMUSG00000083338 ENSMUST00000119476 Gm12475 processed_pseudogene Interval_147639 chr7 70429323 70429656 + 0 NA intron (ENSMUSG00000108869.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000108869.1, intron 1 of 1) 23733 ENSMUSG00000108869.1 ENSMUSG00000108869 ENSMUST00000207723 Gm44532 lincRNA Interval_15930 chr10 59403226 59404257 + 0 NA promoter-TSS (ENSMUSG00000009646.13) protein_coding-promoter-TSS (ENSMUSG00000009646.13) -7286 ENSMUSG00000009646.13 ENSMUSG00000009646 ENSMUST00000162643 Pla2g12b protein_coding Interval_126058 chr5 77144649 77145254 + 0 NA Intergenic Intergenic -4699 ENSMUSG00000106783.1 ENSMUSG00000106783 ENSMUST00000201649 Chaer1 lincRNA Interval_2514 chr1 39902380 39903384 + 0 NA TTS (ENSMUSG00000026074.15) protein_coding-TTS (ENSMUSG00000026074.15) 1703 ENSMUSG00000026074.15 ENSMUSG00000026074 ENSMUST00000191657 Map4k4 protein_coding Interval_174445 chrX 152352756 152353051 + 0 NA intron (ENSMUSG00000056679.13, intron 2 of 2) protein_coding-intron (ENSMUSG00000056679.13, intron 2 of 2) -11059 ENSMUSG00000041096.13 ENSMUSG00000041096 ENSMUST00000177748 Tspyl2 protein_coding Interval_161085 chr8 117369859 117371263 + 0 NA intron (ENSMUSG00000034390.16, intron 1 of 20) protein_coding-intron (ENSMUSG00000034390.16, intron 1 of 20) -52855 ENSMUSG00000034390.16 ENSMUSG00000034390 ENSMUST00000212884 Cmip protein_coding Interval_77676 chr17 94063328 94064103 + 0 NA Intergenic Intergenic 68556 ENSMUSG00000117543.1 ENSMUSG00000117543 ENSMUST00000235005 Gm50004 processed_pseudogene Interval_94372 chr2 90566258 90567596 + 0 NA intron (ENSMUSG00000025314.16, intron 1 of 23) protein_coding-intron (ENSMUSG00000025314.16, intron 1 of 23) 13720 ENSMUSG00000025314.16 ENSMUSG00000025314 ENSMUST00000168621 Ptprj protein_coding Interval_153187 chr7 142246803 142246981 + 0 NA Intergenic Intergenic 4646 ENSMUSG00000110254.1 ENSMUSG00000110254 ENSMUST00000211640 Gm47762 unprocessed_pseudogene Interval_43136 chr13 24575088 24575359 + 0 NA intron (ENSMUSG00000036006.20, intron 1 of 13) protein_coding-intron (ENSMUSG00000036006.20, intron 1 of 13) 29544 ENSMUSG00000085603.3 ENSMUSG00000085603 ENSMUST00000127863 Gm11346 transcribed_processed_pseudogene Interval_105501 chr3 87089890 87090548 + 0 NA intron (ENSMUSG00000041734.15, intron 6 of 15) protein_coding-intron (ENSMUSG00000041734.15, intron 6 of 13) 23326 ENSMUSG00000077672.1 ENSMUSG00000077672 ENSMUST00000104484 Gm24472 snoRNA Interval_29152 chr11 80728074 80728419 + 0 NA intron (ENSMUSG00000035441.14, intron 1 of 9) protein_coding-intron (ENSMUSG00000035441.14, intron 1 of 21) 51757 ENSMUSG00000035441.14 ENSMUSG00000035441 ENSMUST00000125944 Myo1d protein_coding Interval_91788 chr2 49571799 49573725 + 0 NA Intergenic Intergenic 43887 ENSMUSG00000069495.12 ENSMUSG00000069495 ENSMUST00000152485 Epc2 protein_coding Interval_142930 chr6 147059267 147059954 + 0 NA promoter-TSS (ENSMUSG00000040112.9) protein_coding-promoter-TSS (ENSMUSG00000040112.9) 16846 ENSMUSG00000040112.9 ENSMUSG00000040112 ENSMUST00000123139 Mrps35 protein_coding Interval_164483 chr9 37410962 37411490 + 0 NA intron (ENSMUSG00000032125.21, intron 15 of 17) protein_coding-intron (ENSMUSG00000032125.21, intron 15 of 17) 9180 ENSMUSG00000032125.21 ENSMUSG00000032125 ENSMUST00000215777 Robo4 protein_coding Interval_120192 chr4 144038583 144039231 + 0 NA Intergenic Intergenic 3571 ENSMUSG00000095987.1 ENSMUSG00000095987 ENSMUST00000119651 Gm13104 processed_pseudogene Interval_124178 chr5 39037769 39038479 + 0 NA Intergenic Intergenic -35093 ENSMUSG00000106924.1 ENSMUSG00000106924 ENSMUST00000200823 Gm42857 processed_pseudogene Interval_163389 chr9 21220076 21221875 + 0 NA Intergenic Intergenic -4396 ENSMUSG00000097439.6 ENSMUSG00000097439 ENSMUST00000193429 Gm16754 antisense Interval_134871 chr6 32935738 32936198 + 0 NA intron (ENSMUSG00000053768.13, intron 4 of 7) protein_coding-intron (ENSMUSG00000053768.13, intron 4 of 7) -38897 ENSMUSG00000053768.13 ENSMUSG00000053768 ENSMUST00000115091 Chchd3 protein_coding Interval_129530 chr5 120731888 120735594 + 0 NA intron (ENSMUSG00000032690.16, intron 1 of 2) protein_coding-intron (ENSMUSG00000032690.16, intron 9 of 10) 1834 ENSMUSG00000032690.16 ENSMUSG00000032690 ENSMUST00000146101 Oas2 protein_coding Interval_119876 chr4 140634004 140634384 + 0 NA intron (ENSMUSG00000040964.16, intron 1 of 27) protein_coding-intron (ENSMUSG00000040964.16, intron 1 of 27) -17129 ENSMUSG00000040964.16 ENSMUSG00000040964 ENSMUST00000154979 Arhgef10l protein_coding Interval_153868 chr8 10300797 10301049 + 0 NA intron (ENSMUSG00000039057.11, intron 2 of 5) protein_coding-intron (ENSMUSG00000039057.11, intron 1 of 34) 51635 ENSMUSG00000039057.11 ENSMUSG00000039057 ENSMUST00000042103 Myo16 protein_coding Interval_78041 chr18 7326538 7326761 + 0 NA Intergenic Intergenic -142576 ENSMUSG00000061802.6 ENSMUSG00000061802 ENSMUST00000234196 Armc4 protein_coding Interval_125763 chr5 73949549 73951816 + 0 NA Intergenic Intergenic 4301 ENSMUSG00000106968.1 ENSMUSG00000106968 ENSMUST00000202711 C78283 lincRNA Interval_26216 chr11 55162596 55163100 + 0 NA intron (ENSMUSG00000020264.5, intron 8 of 9) protein_coding-intron (ENSMUSG00000020264.5, intron 8 of 9) -11162 ENSMUSG00000049491.15 ENSMUSG00000049491 ENSMUST00000069816 Slc36a3 protein_coding Interval_8211 chr1 136526910 136527748 + 0 NA exon (ENSMUSG00000041498.13, exon 30 of 30) protein_coding-exon (ENSMUSG00000041498.13, exon 30 of 30) 3445 ENSMUSG00000101413.1 ENSMUSG00000101413 ENSMUST00000190220 Gm29485 processed_pseudogene Interval_74139 chr17 46735933 46737021 + 0 NA TTS (ENSMUSG00000023973.13) protein_coding-TTS (ENSMUSG00000023973.13) -9775 ENSMUSG00000002769.9 ENSMUSG00000002769 ENSMUST00000233086 Gnmt protein_coding Interval_174834 chrX 169054171 169054632 + 0 NA intron (ENSMUSG00000087201.1, intron 2 of 3) protein_coding-intron (ENSMUSG00000031355.16, intron 1 of 12) 17790 ENSMUSG00000031355.16 ENSMUSG00000031355 ENSMUST00000112127 Arhgap6 protein_coding Interval_34709 chr12 8859588 8859892 + 0 NA Intergenic Intergenic 17642 ENSMUSG00000042976.6 ENSMUSG00000042976 ENSMUST00000218928 9930038B18Rik lincRNA Interval_38489 chr12 79486065 79486302 + 0 NA intron (ENSMUSG00000059060.15, intron 1 of 2) protein_coding-intron (ENSMUSG00000059060.15, intron 7 of 7) 158830 ENSMUSG00000059060.15 ENSMUSG00000059060 ENSMUST00000221257 Rad51b protein_coding Interval_164870 chr9 42649957 42650306 + 0 NA intron (ENSMUSG00000032017.14, intron 8 of 20) protein_coding-intron (ENSMUSG00000032017.14, intron 6 of 18) -129300 ENSMUSG00000093745.1 ENSMUSG00000093745 ENSMUST00000176676 Gm24420 misc_RNA Interval_134547 chr6 29484697 29486432 + 0 NA promoter-TSS (ENSMUSG00000059022.15) protein_coding-promoter-TSS (ENSMUSG00000059022.15) 2258 ENSMUSG00000088643.1 ENSMUSG00000088643 ENSMUST00000158018 Gm26484 snRNA Interval_48429 chr13 98955507 98956164 + 0 NA Intergenic Intergenic -9919 ENSMUSG00000114569.1 ENSMUSG00000114569 ENSMUST00000223733 Gm35215 lincRNA Interval_104616 chr3 68839710 68840571 + 0 NA Intergenic Intergenic -5939 ENSMUSG00000102853.1 ENSMUSG00000102853 ENSMUST00000195818 Gm7270 processed_pseudogene Interval_54449 chr14 69823337 69823921 + 0 NA Intergenic Intergenic -16791 ENSMUSG00000022085.4 ENSMUSG00000022085 ENSMUST00000022678 Pebp4 protein_coding Interval_137123 chr6 67763412 67763834 + 0 NA Intergenic Intergenic 3149 ENSMUSG00000076505.1 ENSMUSG00000076505 ENSMUST00000103306 Igkv1-131 IG_V_gene Interval_53488 chr14 57808229 57809301 + 0 NA intron (ENSMUSG00000021965.3, intron 1 of 2) protein_coding-intron (ENSMUSG00000021965.3, intron 7 of 8) 10339 ENSMUSG00000021963.17 ENSMUSG00000021963 ENSMUST00000111267 Sap18 protein_coding Interval_99737 chr2 164580402 164580757 + 0 NA intron (ENSMUSG00000074595.9, intron 3 of 4) protein_coding-intron (ENSMUSG00000074595.9, intron 2 of 3) 4868 ENSMUSG00000074595.9 ENSMUSG00000074595 ENSMUST00000109342 Wfdc6a protein_coding Interval_42705 chr13 18218242 18219146 + 0 NA intron (ENSMUSG00000009734.18, intron 3 of 5) protein_coding-intron (ENSMUSG00000009734.18, intron 3 of 7) -118492 ENSMUSG00000113470.1 ENSMUSG00000113470 ENSMUST00000220795 4930448F12Rik lincRNA Interval_33225 chr11 115335988 115336472 + 0 NA intron (ENSMUSG00000018862.11, intron 1 of 6) protein_coding-intron (ENSMUSG00000018862.11, intron 1 of 6) 1499 ENSMUSG00000018862.11 ENSMUSG00000018862 ENSMUST00000019006 Otop3 protein_coding Interval_34908 chr12 13238461 13238803 + 0 NA intron (ENSMUSG00000037149.10, intron 10 of 10) protein_coding-intron (ENSMUSG00000037149.10, intron 10 of 25) 10531 ENSMUSG00000037149.10 ENSMUSG00000037149 ENSMUST00000221623 Ddx1 protein_coding Interval_101519 chr3 3584943 3585780 + 0 NA intron (ENSMUSG00000017688.14, intron 1 of 9) protein_coding-intron (ENSMUSG00000017688.14, intron 1 of 9) 29896 ENSMUSG00000077829.1 ENSMUSG00000077829 ENSMUST00000104639 Gm23237 miRNA Interval_72625 chr17 31133939 31134335 + 0 NA Intergenic Intergenic -4491 ENSMUSG00000024029.4 ENSMUSG00000024029 ENSMUST00000024827 Tff3 protein_coding Interval_19479 chr10 100004521 100004951 + 0 NA Intergenic Intergenic 16115 ENSMUSG00000112299.1 ENSMUSG00000112299 ENSMUST00000219489 Gm17870 processed_pseudogene Interval_55523 chr14 90443080 90443343 + 0 NA Intergenic Intergenic 86824 ENSMUSG00000077619.1 ENSMUSG00000077619 ENSMUST00000104431 Gm25495 snoRNA Interval_59823 chr15 59563134 59564737 + 0 NA intron (ENSMUSG00000059586.10, intron 5 of 7) protein_coding-intron (ENSMUSG00000059586.10, intron 4 of 6) -54655 ENSMUSG00000115896.1 ENSMUSG00000115896 ENSMUST00000229684 Gm36677 lincRNA Interval_75763 chr17 71123797 71123987 + 0 NA intron (ENSMUSG00000024049.15, intron 3 of 3) protein_coding-intron (ENSMUSG00000024049.15, intron 36 of 36) -20646 ENSMUSG00000117315.1 ENSMUSG00000117315 ENSMUST00000233463 1600022D10Rik lincRNA Interval_151388 chr7 122014750 122015501 + 0 NA intron (ENSMUSG00000030872.14, intron 1 of 4) protein_coding-intron (ENSMUSG00000030872.14, intron 1 of 16) 6055 ENSMUSG00000030872.14 ENSMUSG00000030872 ENSMUST00000131081 Gga2 protein_coding Interval_4412 chr1 73996076 73996717 + 0 NA TTS (ENSMUSG00000055322.16) protein_coding-TTS (ENSMUSG00000055322.16) 102280 ENSMUSG00000055322.16 ENSMUSG00000055322 ENSMUST00000190599 Tns1 protein_coding Interval_69091 chr16 90558885 90559185 + 0 NA Intergenic Intergenic 4871 ENSMUSG00000046119.2 ENSMUSG00000046119 ENSMUST00000183621 1110008E08Rik lincRNA Interval_16460 chr10 63003019 63003214 + 0 NA TTS (ENSMUSG00000020070.18) protein_coding-TTS (ENSMUSG00000020070.18) 4337 ENSMUSG00000084985.1 ENSMUSG00000084985 ENSMUST00000129470 Gm16135 antisense Interval_15790 chr10 56751304 56751718 + 0 NA Intergenic Intergenic 77796 ENSMUSG00000112191.1 ENSMUSG00000112191 ENSMUST00000219666 Gm31931 processed_pseudogene Interval_149339 chr7 97543733 97544121 + 0 NA Intergenic Intergenic 8617 ENSMUSG00000025133.9 ENSMUSG00000025133 ENSMUST00000206843 Ints4 protein_coding Interval_69697 chr16 95639840 95640813 + 0 NA Intergenic Intergenic -62129 ENSMUSG00000022895.16 ENSMUSG00000022895 ENSMUST00000233578 Ets2 protein_coding Interval_44941 chr13 50417353 50418871 + 0 NA intron (ENSMUSG00000037816.10, intron 1 of 1) protein_coding-intron (ENSMUSG00000037816.10, intron 1 of 9) -13009 ENSMUSG00000037816.10 ENSMUSG00000037816 ENSMUST00000176543 Fbxw17 protein_coding Interval_71698 chr17 25507569 25509123 + 0 NA Intergenic Intergenic -10239 ENSMUSG00000117437.1 ENSMUSG00000117437 ENSMUST00000234604 Gm33727 lincRNA Interval_29469 chr11 84193264 84193799 + 0 NA intron (ENSMUSG00000020532.18, intron 2 of 3) protein_coding-intron (ENSMUSG00000020532.18, intron 2 of 55) 3938 ENSMUSG00000103122.1 ENSMUSG00000103122 ENSMUST00000194891 Gm37391 TEC Interval_106515 chr3 96812573 96815320 + 0 NA intron (ENSMUSG00000038304.14, intron 1 of 3) protein_coding-intron (ENSMUSG00000038304.14, intron 1 of 4) 15405 ENSMUSG00000038304.14 ENSMUSG00000038304 ENSMUST00000047702 Cd160 protein_coding Interval_123299 chr5 31201583 31202888 + 0 NA promoter-TSS (ENSMUSG00000043059.16) protein_coding-promoter-TSS (ENSMUSG00000043059.16) -20 ENSMUSG00000043059.16 ENSMUSG00000043059 ENSMUST00000201231 Zfp513 protein_coding Interval_74754 chr17 56333009 56333513 + 0 NA intron (ENSMUSG00000024201.12, intron 1 of 21) protein_coding-intron (ENSMUSG00000024201.12, intron 1 of 22) 28854 ENSMUSG00000001228.14 ENSMUSG00000001228 ENSMUST00000139654 Uhrf1 protein_coding Interval_64021 chr16 5382760 5383503 + 0 NA intron (ENSMUSG00000116029.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000116029.1, intron 1 of 2) -58974 ENSMUSG00000084573.1 ENSMUSG00000084573 ENSMUST00000122624 n-R5s30 rRNA Interval_118011 chr4 127984558 127985997 + 0 NA Intergenic Intergenic -14326 ENSMUSG00000028813.2 ENSMUSG00000028813 ENSMUST00000030614 CK137956 protein_coding Interval_79296 chr18 30218587 30218826 + 0 NA Intergenic Intergenic -48543 ENSMUSG00000117465.1 ENSMUSG00000117465 ENSMUST00000234467 Gm49980 lincRNA Interval_140555 chr6 119489699 119490647 + 0 NA intron (ENSMUSG00000030170.14, intron 1 of 4) protein_coding-intron (ENSMUSG00000030170.14, intron 1 of 4) 10505 ENSMUSG00000030019.6 ENSMUSG00000030019 ENSMUST00000032094 Fbxl14 protein_coding Interval_86428 chr19 40409694 40410499 + 0 NA intron (ENSMUSG00000025006.18, intron 1 of 21) protein_coding-intron (ENSMUSG00000025006.18, intron 2 of 3) -33222 ENSMUSG00000025006.18 ENSMUSG00000025006 ENSMUST00000225293 Sorbs1 protein_coding Interval_27811 chr11 70125019 70125581 + 0 NA Intergenic Intergenic 4042 ENSMUSG00000081515.1 ENSMUSG00000081515 ENSMUST00000118803 Gm12311 processed_pseudogene Interval_100201 chr2 167609704 167610522 + 0 NA TTS (ENSMUSG00000078923.10) protein_coding-TTS (ENSMUSG00000078923.10) 18718 ENSMUSG00000081511.1 ENSMUSG00000081511 ENSMUST00000118482 Gm11475 processed_pseudogene Interval_2760 chr1 44255393 44255634 + 0 NA Intergenic Intergenic -36600 ENSMUSG00000046828.3 ENSMUSG00000046828 ENSMUST00000150062 Mettl21e protein_coding Interval_3722 chr1 62181380 62182143 + 0 NA intron (ENSMUSG00000052062.14, intron 10 of 21) protein_coding-intron (ENSMUSG00000052062.14, intron 10 of 21) -45652 ENSMUSG00000085019.2 ENSMUSG00000085019 ENSMUST00000127498 Pard3bos2 antisense Interval_83612 chr18 90558524 90559556 + 0 NA Intergenic Intergenic -20737 ENSMUSG00000110277.2 ENSMUSG00000110277 ENSMUST00000210766 Gm45871 protein_coding Interval_49884 chr13 117611650 117611894 + 0 NA intron (ENSMUSG00000021730.8, intron 1 of 1) protein_coding-intron (ENSMUSG00000021730.8, intron 1 of 7) 9452 ENSMUSG00000021730.8 ENSMUSG00000021730 ENSMUST00000006991 Hcn1 protein_coding Interval_42139 chr13 9116605 9117403 + 0 NA intron (ENSMUSG00000033499.14, intron 1 of 15) protein_coding-intron (ENSMUSG00000033499.14, intron 1 of 16) 7699 ENSMUSG00000088442.1 ENSMUSG00000088442 ENSMUST00000157817 Gm23553 misc_RNA Interval_138301 chr6 87033329 87033540 + 0 NA Intergenic Intergenic -9416 ENSMUSG00000029992.14 ENSMUSG00000029992 ENSMUST00000146410 Gfpt1 protein_coding Interval_75528 chr17 67791870 67792597 + 0 NA intron (ENSMUSG00000032796.8, intron 39 of 62) protein_coding-intron (ENSMUSG00000032796.8, intron 39 of 62) 58830 ENSMUSG00000090955.1 ENSMUSG00000090955 ENSMUST00000166414 Gm17097 processed_pseudogene Interval_45627 chr13 56350689 56350971 + 0 NA Intergenic Intergenic -8302 ENSMUSG00000088149.1 ENSMUSG00000088149 ENSMUST00000157524 Gm24716 snRNA Interval_39049 chr12 84680332 84681029 + 0 NA TTS (ENSMUSG00000071234.3) protein_coding-TTS (ENSMUSG00000071234.3) 3380 ENSMUSG00000113317.1 ENSMUSG00000113317 ENSMUST00000221117 Gm48573 antisense Interval_55618 chr14 96088244 96088448 + 0 NA Intergenic Intergenic -105646 ENSMUSG00000115603.1 ENSMUSG00000115603 ENSMUST00000226824 Gm19099 processed_pseudogene Interval_5613 chr1 90233606 90234011 + 0 NA Intergenic Intergenic -5282 ENSMUSG00000104087.1 ENSMUSG00000104087 ENSMUST00000195172 Gm38277 TEC Interval_37959 chr12 73356592 73357833 + 0 NA intron (ENSMUSG00000113425.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000113425.1, intron 1 of 1) 2131 ENSMUSG00000113425.1 ENSMUSG00000113425 ENSMUST00000222671 Gm48653 lincRNA Interval_7600 chr1 132440914 132441138 + 0 NA intron (ENSMUSG00000042046.15, intron 2 of 11) protein_coding-intron (ENSMUSG00000042046.15, intron 2 of 12) -21383 ENSMUSG00000042046.15 ENSMUSG00000042046 ENSMUST00000191494 Dstyk protein_coding Interval_57431 chr15 10734869 10735712 + 0 NA intron (ENSMUSG00000096971.2, intron 2 of 6) processed_transcript-intron (ENSMUSG00000096971.2, intron 2 of 6) 20390 ENSMUSG00000096971.2 ENSMUSG00000096971 ENSMUST00000181739 4930556M19Rik processed_transcript Interval_123091 chr5 29618271 29618652 + 0 NA intron (ENSMUSG00000039000.8, intron 11 of 13) protein_coding-intron (ENSMUSG00000039000.8, intron 11 of 22) -12452 ENSMUSG00000039000.8 ENSMUSG00000039000 ENSMUST00000199598 Ube3c protein_coding Interval_166386 chr9 58831401 58831684 + 0 NA intron (ENSMUSG00000032338.9, intron 1 of 7) protein_coding-intron (ENSMUSG00000032338.9, intron 1 of 7) 8130 ENSMUSG00000032338.9 ENSMUSG00000032338 ENSMUST00000034889 Hcn4 protein_coding Interval_2528 chr1 39969494 39970058 + 0 NA intron (ENSMUSG00000026074.15, intron 1 of 2) protein_coding-intron (ENSMUSG00000026074.15, intron 3 of 30) 68597 ENSMUSG00000026074.15 ENSMUSG00000026074 ENSMUST00000191657 Map4k4 protein_coding Interval_84667 chr19 14862477 14863312 + 0 NA Intergenic Intergenic 97872 ENSMUSG00000063586.1 ENSMUSG00000063586 ENSMUST00000072982 Gm5513 processed_pseudogene Interval_160330 chr8 108470270 108470825 + 0 NA intron (ENSMUSG00000038872.10, intron 3 of 15) protein_coding-intron (ENSMUSG00000038872.10, intron 3 of 15) 66674 ENSMUSG00000109868.1 ENSMUSG00000109868 ENSMUST00000211262 Gm39244 lincRNA Interval_157136 chr8 66219167 66219454 + 0 NA intron (ENSMUSG00000036469.16, intron 1 of 5) protein_coding-intron (ENSMUSG00000036469.16, intron 1 of 5) 97568 ENSMUSG00000036469.16 ENSMUSG00000036469 ENSMUST00000110253 Marchf1 protein_coding Interval_104610 chr3 68782962 68784216 + 0 NA Intergenic Intergenic 22094 ENSMUSG00000102936.1 ENSMUSG00000102936 ENSMUST00000191767 Gm35584 lincRNA Interval_85210 chr19 23781846 23783275 + 0 NA intron (ENSMUSG00000024897.9, intron 1 of 12) protein_coding-intron (ENSMUSG00000024897.9, intron 1 of 12) -17978 ENSMUSG00000118287.1 ENSMUSG00000118287 ENSMUST00000236371 Gm50300 processed_pseudogene Interval_110584 chr4 4227732 4227995 + 0 NA Intergenic Intergenic -89044 ENSMUSG00000045573.9 ENSMUSG00000045573 ENSMUST00000133567 Penk protein_coding Interval_32206 chr11 106148349 106149126 + 0 NA intron (ENSMUSG00000020700.11, intron 9 of 15) protein_coding-intron (ENSMUSG00000020700.11, intron 9 of 15) -2475 ENSMUSG00000020700.11 ENSMUSG00000020700 ENSMUST00000124449 Map3k3 protein_coding Interval_57416 chr15 10665820 10666033 + 0 NA intron (ENSMUSG00000022246.14, intron 2 of 16) protein_coding-intron (ENSMUSG00000022246.14, intron 2 of 17) 48172 ENSMUSG00000022246.14 ENSMUSG00000022246 ENSMUST00000227366 Rai14 protein_coding Interval_52658 chr14 48337795 48338621 + 0 NA Intergenic Intergenic 24407 ENSMUSG00000114991.1 ENSMUSG00000114991 ENSMUST00000228144 1700128I11Rik lincRNA Interval_90710 chr2 32045371 32045647 + 0 NA intron (ENSMUSG00000001855.15, intron 1 of 3) protein_coding-intron (ENSMUSG00000001855.15, intron 32 of 35) -5437 ENSMUSG00000099075.1 ENSMUSG00000099075 ENSMUST00000184964 Mir7674 miRNA Interval_61549 chr15 82271137 82271621 + 0 NA intron (ENSMUSG00000022456.18, intron 1 of 10) protein_coding-intron (ENSMUSG00000022456.18, intron 1 of 11) 2577 ENSMUSG00000022456.18 ENSMUSG00000022456 ENSMUST00000230507 Septin3 protein_coding Interval_116056 chr4 107295485 107295725 + 0 NA intron (ENSMUSG00000034785.14, intron 1 of 2) protein_coding-intron (ENSMUSG00000034785.14, intron 1 of 2) 11537 ENSMUSG00000034785.14 ENSMUSG00000034785 ENSMUST00000145332 Dio1 protein_coding Interval_161899 chr8 123640012 123640220 + 0 NA intron (ENSMUSG00000092329.1, intron 1 of 15) protein_coding-intron (ENSMUSG00000092329.1, intron 1 of 15) -13813 ENSMUSG00000039960.5 ENSMUSG00000039960 ENSMUST00000045487 Rhou protein_coding Interval_98593 chr2 153462663 153463680 + 0 NA TTS (ENSMUSG00000061411.12) protein_coding-TTS (ENSMUSG00000061411.12) 16555 ENSMUSG00000061411.12 ENSMUSG00000061411 ENSMUST00000156786 Nol4l protein_coding Interval_67638 chr16 54983586 54984749 + 0 NA Intergenic Intergenic 11736 ENSMUSG00000064549.1 ENSMUSG00000064549 ENSMUST00000082615 Gm22977 snRNA Interval_94967 chr2 102257832 102259709 + 0 NA Intergenic Intergenic -48391 ENSMUSG00000081774.1 ENSMUSG00000081774 ENSMUST00000118901 Gm13866 processed_pseudogene Interval_67 GL456212.1 130729 130945 + 0 NA NA NA NA NA Interval_40268 chr12 102930201 102931380 + 0 NA Intergenic Intergenic 31474 ENSMUSG00000043319.5 ENSMUSG00000043319 ENSMUST00000053611 Cox8c protein_coding Interval_125933 chr5 75933039 75934839 + 0 NA exon (ENSMUSG00000062960.10, exon 30 of 30) protein_coding-exon (ENSMUSG00000062960.10, exon 30 of 30) 24112 ENSMUSG00000088783.1 ENSMUSG00000088783 ENSMUST00000158158 Gm25374 miRNA Interval_143780 chr7 16262843 16263431 + 0 NA Intergenic Intergenic -3597 ENSMUSG00000049130.6 ENSMUSG00000049130 ENSMUST00000209442 C5ar1 protein_coding Interval_128970 chr5 116387177 116388592 + 0 NA Intergenic Intergenic 4916 ENSMUSG00000086945.1 ENSMUSG00000086945 ENSMUST00000153818 4930562A09Rik lincRNA Interval_142012 chr6 136543115 136543620 + 0 NA intron (ENSMUSG00000030213.12, intron 1 of 8) protein_coding-intron (ENSMUSG00000030213.12, intron 1 of 14) -24336 ENSMUSG00000107702.1 ENSMUSG00000107702 ENSMUST00000204157 Gm44140 bidirectional_promoter_lncRNA Interval_26013 chr11 53478249 53480315 + 0 NA promoter-TSS (ENSMUSG00000054450.1) TEC-promoter-TSS (ENSMUSG00000054450.1) -884 ENSMUSG00000054450.1 ENSMUSG00000054450 ENSMUST00000067523 Gm9945 TEC Interval_118370 chr4 130946944 130947877 + 0 NA intron (ENSMUSG00000040533.7, intron 2 of 7) protein_coding-intron (ENSMUSG00000040533.7, intron 2 of 7) 3025 ENSMUSG00000040533.7 ENSMUSG00000040533 ENSMUST00000102576 Matn1 protein_coding Interval_143743 chr7 16018236 16019135 + 0 NA intron (ENSMUSG00000070808.4, intron 1 of 14) protein_coding-intron (ENSMUSG00000070808.4, intron 1 of 14) 29236 ENSMUSG00000070808.4 ENSMUSG00000070808 ENSMUST00000209251 Bicra protein_coding Interval_19002 chr10 93710996 93711344 + 0 NA intron (ENSMUSG00000020019.4, intron 5 of 9) protein_coding-intron (ENSMUSG00000020019.4, intron 5 of 9) 17037 ENSMUSG00000086891.2 ENSMUSG00000086891 ENSMUST00000131387 Gm15963 antisense Interval_39648 chr12 91771179 91771415 + 0 NA promoter-TSS (ENSMUSG00000020961.15) protein_coding-promoter-TSS (ENSMUSG00000020961.15) -127 ENSMUSG00000020961.15 ENSMUSG00000020961 ENSMUST00000166008 Ston2 protein_coding Interval_134172 chr6 22349870 22350169 + 0 NA intron (ENSMUSG00000029672.16, intron 1 of 9) protein_coding-intron (ENSMUSG00000029672.16, intron 1 of 8) -6106 ENSMUSG00000029672.16 ENSMUSG00000029672 ENSMUST00000168965 Fam3c protein_coding Interval_3281 chr1 55491589 55492414 + 0 NA intron (ENSMUSG00000038349.10, intron 1 of 5) protein_coding-intron (ENSMUSG00000038349.10, intron 1 of 5) -46977 ENSMUSG00000100309.1 ENSMUSG00000100309 ENSMUST00000186507 Gm6644 processed_pseudogene Interval_51774 chr14 32121778 32122821 + 0 NA Intergenic Intergenic -25288 ENSMUSG00000021907.13 ENSMUSG00000021907 ENSMUST00000130397 Msmb protein_coding Interval_96356 chr2 121936997 121938370 + 0 NA Intergenic Intergenic 18409 ENSMUSG00000074881.4 ENSMUSG00000074881 ENSMUST00000104936 Mageb3 protein_coding Interval_28688 chr11 77758224 77758442 + 0 NA Intergenic Intergenic 11292 ENSMUSG00000081924.1 ENSMUSG00000081924 ENSMUST00000117231 Gm11191 processed_pseudogene Interval_149161 chr7 95561022 95561224 + 0 NA Intergenic Intergenic 86177 ENSMUSG00000108429.1 ENSMUSG00000108429 ENSMUST00000206820 Gm44603 processed_pseudogene Interval_6655 chr1 118569242 118569433 + 0 NA intron (ENSMUSG00000064302.13, intron 35 of 41) protein_coding-intron (ENSMUSG00000064302.13, intron 33 of 39) 56620 ENSMUSG00000064302.13 ENSMUSG00000064302 ENSMUST00000187575 Clasp1 protein_coding Interval_46644 chr13 67872488 67873383 + 0 NA Intergenic Intergenic 9609 ENSMUSG00000064063.6 ENSMUSG00000064063 ENSMUST00000078471 BC048507 protein_coding Interval_129215 chr5 118253119 118253326 + 0 NA intron (ENSMUSG00000032840.7, intron 1 of 4) protein_coding-intron (ENSMUSG00000032840.7, intron 1 of 4) 7995 ENSMUSG00000032840.7 ENSMUSG00000032840 ENSMUST00000049138 2410131K14Rik protein_coding Interval_133979 chr6 17239101 17239293 + 0 NA intron (ENSMUSG00000085264.1, intron 1 of 4) antisense-intron (ENSMUSG00000085264.1, intron 1 of 4) 41090 ENSMUSG00000085171.7 ENSMUSG00000085171 ENSMUST00000124434 D830026I12Rik lincRNA Interval_154866 chr8 24496046 24497095 + 0 NA Intergenic Intergenic -9860 ENSMUSG00000109237.1 ENSMUSG00000109237 ENSMUST00000208727 9130214F15Rik TEC Interval_68980 chr16 89903857 89904948 + 0 NA intron (ENSMUSG00000002489.16, intron 2 of 2) protein_coding-intron (ENSMUSG00000002489.16, intron 3 of 27) -109120 ENSMUSG00000002489.16 ENSMUSG00000002489 ENSMUST00000136760 Tiam1 protein_coding Interval_88860 chr2 11729203 11729419 + 0 NA intron (ENSMUSG00000023206.16, intron 5 of 6) protein_coding-intron (ENSMUSG00000023206.16, intron 5 of 6) 23924 ENSMUSG00000023206.16 ENSMUSG00000023206 ENSMUST00000139774 Il15ra protein_coding Interval_43221 chr13 25655366 25655708 + 0 NA Intergenic Intergenic 25606 ENSMUSG00000082161.1 ENSMUSG00000082161 ENSMUST00000121436 Gm11350 processed_pseudogene Interval_47846 chr13 93725516 93725938 + 0 NA intron (ENSMUSG00000042102.7, intron 14 of 15) protein_coding-intron (ENSMUSG00000042102.7, intron 14 of 15) 1975 ENSMUSG00000085202.1 ENSMUSG00000085202 ENSMUST00000122949 Gm15620 processed_pseudogene Interval_66669 chr16 35991139 35991750 + 0 NA intron (ENSMUSG00000022905.12, intron 1 of 4) protein_coding-intron (ENSMUSG00000022905.12, intron 1 of 13) -8809 ENSMUSG00000022905.12 ENSMUSG00000022905 ENSMUST00000173469 Kpna1 protein_coding Interval_64514 chr16 12956416 12956928 + 0 NA Intergenic Intergenic -5209 ENSMUSG00000116170.1 ENSMUSG00000116170 ENSMUST00000230534 Gm6332 processed_pseudogene Interval_73383 chr17 36908004 36910012 + 0 NA intron (ENSMUSG00000058063.4, intron 7 of 7) protein_coding-intron (ENSMUSG00000058063.4, intron 7 of 7) 10890 ENSMUSG00000058063.4 ENSMUSG00000058063 ENSMUST00000078438 Trim31 protein_coding Interval_106982 chr3 102466705 102467021 + 0 NA Intergenic Intergenic -21831 ENSMUSG00000027859.10 ENSMUSG00000027859 ENSMUST00000198644 Ngf protein_coding Interval_92982 chr2 69162190 69163053 + 0 NA intron (ENSMUSG00000034738.8, intron 7 of 15) protein_coding-intron (ENSMUSG00000034738.8, intron 7 of 15) -16684 ENSMUSG00000034738.8 ENSMUSG00000034738 ENSMUST00000141276 Nostrin protein_coding Interval_33966 chr11 119715310 119716253 + 0 NA intron (ENSMUSG00000025583.15, intron 3 of 32) protein_coding-intron (ENSMUSG00000025583.15, intron 3 of 33) -30620 ENSMUSG00000088670.1 ENSMUSG00000088670 ENSMUST00000158045 Gm23663 snoRNA Interval_30379 chr11 93985960 93986517 + 0 NA Intergenic Intergenic -17717 ENSMUSG00000037601.11 ENSMUSG00000037601 ENSMUST00000107844 Nme1 protein_coding Interval_168771 chr9 86813760 86815028 + 0 NA intron (ENSMUSG00000033419.16, intron 10 of 29) protein_coding-intron (ENSMUSG00000033419.16, intron 10 of 28) -27539 ENSMUSG00000103891.1 ENSMUSG00000103891 ENSMUST00000192170 Gm37941 TEC Interval_38466 chr12 79232882 79233559 + 0 NA TTS (ENSMUSG00000066440.5) protein_coding-TTS (ENSMUSG00000066440.5) 11191 ENSMUSG00000066440.5 ENSMUSG00000066440 ENSMUST00000219571 Zfyve26 protein_coding Interval_126248 chr5 84018214 84019795 + 0 NA Intergenic Intergenic -104309 ENSMUSG00000079067.5 ENSMUSG00000079067 ENSMUST00000120716 Hmgn2-ps1 processed_pseudogene Interval_110997 chr4 11100563 11101108 + 0 NA Intergenic Intergenic -21970 ENSMUSG00000086765.7 ENSMUSG00000086765 ENSMUST00000142297 Gm11827 lincRNA Interval_72097 chr17 28018255 28019157 + 0 NA intron (ENSMUSG00000024219.16, intron 11 of 23) protein_coding-intron (ENSMUSG00000024219.16, intron 12 of 24) -16344 ENSMUSG00000117263.1 ENSMUSG00000117263 ENSMUST00000233367 Gm35290 antisense Interval_74836 chr17 56792495 56793304 + 0 NA intron (ENSMUSG00000024206.15, intron 4 of 5) protein_coding-intron (ENSMUSG00000024206.15, intron 6 of 17) 22649 ENSMUSG00000090273.3 ENSMUSG00000090273 ENSMUST00000168666 Prr22 protein_coding Interval_28395 chr11 75620764 75623249 + 0 NA intron (ENSMUSG00000017781.17, intron 1 of 2) protein_coding-intron (ENSMUSG00000017781.17, intron 8 of 9) -9049 ENSMUSG00000006127.9 ENSMUSG00000006127 ENSMUST00000139856 Inpp5k protein_coding Interval_151438 chr7 122445065 122445617 + 0 NA intron (ENSMUSG00000052889.11, intron 2 of 2) protein_coding-intron (ENSMUSG00000052889.11, intron 3 of 16) -1517 ENSMUSG00000088299.1 ENSMUSG00000088299 ENSMUST00000157674 Gm26414 misc_RNA Interval_33050 chr11 113874877 113875891 + 0 NA intron (ENSMUSG00000041592.16, intron 5 of 11) protein_coding-intron (ENSMUSG00000041592.16, intron 5 of 44) -64961 ENSMUSG00000041592.16 ENSMUSG00000041592 ENSMUST00000144301 Sdk2 protein_coding Interval_34211 chr11 121310906 121311170 + 0 NA Intergenic Intergenic 20294 ENSMUSG00000039275.9 ENSMUSG00000039275 ENSMUST00000151492 Foxk2 protein_coding Interval_6055 chr1 95250216 95250432 + 0 NA Intergenic Intergenic 6486 ENSMUSG00000099592.1 ENSMUSG00000099592 ENSMUST00000190584 Gm5264 processed_pseudogene Interval_164259 chr9 34636046 34636324 + 0 NA intron (ENSMUSG00000032036.15, intron 1 of 15) protein_coding-intron (ENSMUSG00000032036.15, intron 1 of 16) 114430 ENSMUSG00000103552.1 ENSMUSG00000103552 ENSMUST00000194358 Gm38217 TEC Interval_106803 chr3 100969085 100970387 + 0 NA promoter-TSS (ENSMUSG00000033222.16) protein_coding-promoter-TSS (ENSMUSG00000033222.16) -9741 ENSMUSG00000033222.16 ENSMUSG00000033222 ENSMUST00000200506 Ttf2 protein_coding Interval_131690 chr5 139317387 139318488 + 0 NA intron (ENSMUSG00000056413.16, intron 1 of 10) protein_coding-intron (ENSMUSG00000056413.16, intron 1 of 10) 5513 ENSMUSG00000098690.1 ENSMUSG00000098690 ENSMUST00000184884 Gm27316 misc_RNA Interval_86397 chr19 40231302 40232441 + 0 NA intron (ENSMUSG00000055044.12, intron 5 of 5) protein_coding-intron (ENSMUSG00000055044.12, intron 4 of 6) -1066 ENSMUSG00000055044.12 ENSMUSG00000055044 ENSMUST00000182636 Pdlim1 protein_coding Interval_158342 chr8 82088275 82088573 + 0 NA intron (ENSMUSG00000037940.17, intron 24 of 24) protein_coding-intron (ENSMUSG00000037940.17, intron 22 of 22) 64358 ENSMUSG00000089147.1 ENSMUSG00000089147 ENSMUST00000158522 Gm25267 snRNA Interval_89812 chr2 25607637 25608905 + 0 NA TTS (ENSMUSG00000026940.3) protein_coding-TTS (ENSMUSG00000026940.3) 9388 ENSMUSG00000026940.3 ENSMUSG00000026940 ENSMUST00000129520 Ccdc183 protein_coding Interval_102063 chr3 16343108 16343379 + 0 NA Intergenic Intergenic 160007 ENSMUSG00000047213.14 ENSMUSG00000047213 ENSMUST00000108346 Ythdf3 protein_coding Interval_1709 chr1 31892064 31892759 + 0 NA Intergenic Intergenic 156354 ENSMUSG00000082159.2 ENSMUSG00000082159 ENSMUST00000117896 Gm7910 processed_pseudogene Interval_141028 chr6 124472749 124473068 + 0 NA Intergenic Intergenic 6143 ENSMUSG00000118414.1 ENSMUSG00000118414 ENSMUST00000238756 Gm50463 unitary_pseudogene Interval_61511 chr15 82069834 82070586 + 0 NA exon (ENSMUSG00000068117.10, exon 1 of 31) protein_coding-exon (ENSMUSG00000068117.10, exon 1 of 31) 214 ENSMUSG00000068117.10 ENSMUSG00000068117 ENSMUST00000186125 Mei1 protein_coding Interval_100802 chr2 172604535 172604932 + 0 NA Intergenic Intergenic 53742 ENSMUSG00000028640.11 ENSMUSG00000028640 ENSMUST00000142633 Tfap2c protein_coding Interval_142095 chr6 137134157 137134469 + 0 NA intron (ENSMUSG00000030222.13, intron 2 of 2) protein_coding-intron (ENSMUSG00000030222.13, intron 2 of 4) 5750 ENSMUSG00000030222.13 ENSMUSG00000030222 ENSMUST00000149100 Rerg protein_coding Interval_49618 chr13 113583502 113584971 + 0 NA Intergenic Intergenic -16469 ENSMUSG00000114715.1 ENSMUSG00000114715 ENSMUST00000225395 Gm34471 lincRNA Interval_97789 chr2 144099105 144099378 + 0 NA exon (ENSMUSG00000074758.10, exon 4 of 4) lincRNA-exon (ENSMUSG00000074758.10, exon 4 of 4) -30458 ENSMUSG00000086384.1 ENSMUSG00000086384 ENSMUST00000145504 Banf2os antisense Interval_67253 chr16 44780688 44781005 + 0 NA intron (ENSMUSG00000022667.18, intron 1 of 7) protein_coding-intron (ENSMUSG00000022667.18, intron 1 of 6) 15047 ENSMUSG00000022667.18 ENSMUSG00000022667 ENSMUST00000134625 Cd200r1 protein_coding Interval_107048 chr3 103153701 103154832 + 0 NA intron (ENSMUSG00000007379.15, intron 3 of 6) protein_coding-intron (ENSMUSG00000007379.15, intron 9 of 11) 5102 ENSMUSG00000007379.15 ENSMUSG00000007379 ENSMUST00000174486 Dennd2c protein_coding Interval_86403 chr19 40257311 40257541 + 0 NA intron (ENSMUSG00000055044.12, intron 1 of 2) protein_coding-intron (ENSMUSG00000055044.12, intron 1 of 6) -24851 ENSMUSG00000117793.1 ENSMUSG00000117793 ENSMUST00000237233 Gm5693 processed_pseudogene Interval_57587 chr15 12629013 12629207 + 0 NA intron (ENSMUSG00000022197.16, intron 2 of 4) protein_coding-intron (ENSMUSG00000022197.16, intron 2 of 4) 6236 ENSMUSG00000103130.1 ENSMUSG00000103130 ENSMUST00000191701 F830212C03Rik TEC Interval_113085 chr4 47767614 47768108 + 0 NA Intergenic Intergenic -152894 ENSMUSG00000089349.1 ENSMUSG00000089349 ENSMUST00000158724 Gm22670 snoRNA Interval_54429 chr14 69698672 69699432 + 0 NA intron (ENSMUSG00000034194.18, intron 1 of 1) protein_coding-intron (ENSMUSG00000034194.18, intron 6 of 7) 6804 ENSMUSG00000098666.1 ENSMUSG00000098666 ENSMUST00000184438 Mir6950 miRNA Interval_111055 chr4 11529207 11529970 + 0 NA intron (ENSMUSG00000040720.15, intron 16 of 24) protein_coding-intron (ENSMUSG00000040720.15, intron 15 of 23) -26749 ENSMUSG00000086625.1 ENSMUSG00000086625 ENSMUST00000141538 Gm11831 antisense Interval_79489 chr18 32284916 32285761 + 0 NA Intergenic Intergenic -8012 ENSMUSG00000089529.1 ENSMUSG00000089529 ENSMUST00000158904 Gm22325 misc_RNA Interval_93723 chr2 76205311 76205739 + 0 NA intron (ENSMUSG00000075270.11, intron 2 of 14) protein_coding-intron (ENSMUSG00000075270.11, intron 4 of 19) 9869 ENSMUSG00000075270.11 ENSMUSG00000075270 ENSMUST00000144892 Pde11a protein_coding Interval_109141 chr3 136684087 136684826 + 0 NA intron (ENSMUSG00000028161.17, intron 1 of 12) protein_coding-intron (ENSMUSG00000028161.17, intron 1 of 13) -16755 ENSMUSG00000106596.1 ENSMUSG00000106596 ENSMUST00000200507 Gm42822 TEC Interval_27834 chr11 70313982 70314267 + 0 NA Intergenic Intergenic 8324 ENSMUSG00000018907.10 ENSMUSG00000018907 ENSMUST00000149060 Alox12e protein_coding Interval_11524 chr1 182466086 182466298 + 0 NA Intergenic Intergenic 15302 ENSMUSG00000026509.15 ENSMUSG00000026509 ENSMUST00000192483 Capn2 protein_coding Interval_67514 chr16 50118163 50118604 + 0 NA Intergenic Intergenic 7310 ENSMUSG00000098028.1 ENSMUSG00000098028 ENSMUST00000182962 Gm8824 processed_pseudogene Interval_21805 chr11 4466139 4466751 + 0 NA Intergenic Intergenic 21921 ENSMUSG00000034354.17 ENSMUSG00000034354 ENSMUST00000144242 Mtmr3 protein_coding Interval_25904 chr11 52436934 52437817 + 0 NA Intergenic Intergenic 32059 ENSMUSG00000080951.1 ENSMUSG00000080951 ENSMUST00000122004 Gm12208 processed_pseudogene Interval_171189 chr9 115064836 115065107 + 0 NA intron (ENSMUSG00000040875.12, intron 2 of 4) protein_coding-intron (ENSMUSG00000040875.12, intron 2 of 11) 66355 ENSMUSG00000040875.12 ENSMUSG00000040875 ENSMUST00000182413 Osbpl10 protein_coding Interval_155055 chr8 25989969 25990634 + 0 NA intron (ENSMUSG00000037251.5, intron 1 of 4) protein_coding-intron (ENSMUSG00000037251.5, intron 1 of 4) 3832 ENSMUSG00000037251.5 ENSMUSG00000037251 ENSMUST00000061850 Pomk protein_coding Interval_148596 chr7 82952813 82954878 + 0 NA Intergenic Intergenic -13157 ENSMUSG00000109106.1 ENSMUSG00000109106 ENSMUST00000209078 4933430H16Rik lincRNA Interval_54735 chr14 74263407 74263745 + 0 NA intron (ENSMUSG00000115704.1, intron 2 of 4) lincRNA-intron (ENSMUSG00000115704.1, intron 2 of 4) -33969 ENSMUSG00000115411.1 ENSMUSG00000115411 ENSMUST00000228329 Gm6986 processed_pseudogene Interval_101002 chr2 174116803 174117454 + 0 NA intron (ENSMUSG00000039263.16, intron 5 of 6) protein_coding-intron (ENSMUSG00000039263.16, intron 6 of 11) 5948 ENSMUSG00000039263.16 ENSMUSG00000039263 ENSMUST00000136449 Npepl1 protein_coding Interval_143086 chr6 149153905 149154980 + 0 NA Intergenic Intergenic 12929 ENSMUSG00000039958.17 ENSMUSG00000039958 ENSMUST00000111551 Etfbkmt protein_coding Interval_126306 chr5 86368528 86369732 + 0 NA intron (ENSMUSG00000061259.11, intron 1 of 9) protein_coding-intron (ENSMUSG00000061259.11, intron 1 of 9) -41394 ENSMUSG00000061259.11 ENSMUSG00000061259 ENSMUST00000031175 Tmprss11d protein_coding Interval_50134 chr14 8183284 8183757 + 0 NA Intergenic Intergenic -16424 ENSMUSG00000021748.9 ENSMUSG00000021748 ENSMUST00000224690 Pdhb protein_coding Interval_94275 chr2 87378483 87378992 + 0 NA Intergenic Intergenic -7112 ENSMUSG00000047594.4 ENSMUSG00000047594 ENSMUST00000056435 Olfr1122 protein_coding Interval_163906 chr9 28197467 28198122 + 0 NA promoter-TSS (ENSMUSG00000087531.7) sense_intronic-promoter-TSS (ENSMUSG00000087531.7) -146 ENSMUSG00000087531.7 ENSMUSG00000087531 ENSMUST00000139851 Gm15606 sense_intronic Interval_145654 chr7 36784204 36784431 + 0 NA Intergenic Intergenic -32844 ENSMUSG00000089273.1 ENSMUSG00000089273 ENSMUST00000158648 Gm24550 misc_RNA Interval_90952 chr2 33677221 33677509 + 0 NA Intergenic Intergenic -24567 ENSMUSG00000081244.3 ENSMUSG00000081244 ENSMUST00000121118 Gm13529 processed_pseudogene Interval_152628 chr7 135520997 135522565 + 0 NA intron (ENSMUSG00000050866.7, intron 1 of 2) protein_coding-intron (ENSMUSG00000050866.7, intron 1 of 2) 6873 ENSMUSG00000050866.7 ENSMUSG00000050866 ENSMUST00000053716 Clrn3 protein_coding Interval_136700 chr6 58125663 58125950 + 0 NA Intergenic Intergenic -9176 ENSMUSG00000093743.1 ENSMUSG00000093743 ENSMUST00000175797 Vmn1r-ps17 unprocessed_pseudogene Interval_57163 chr15 7092422 7093127 + 0 NA intron (ENSMUSG00000054263.12, intron 1 of 4) protein_coding-intron (ENSMUSG00000054263.12, intron 1 of 4) 2160 ENSMUSG00000054263.12 ENSMUSG00000054263 ENSMUST00000171588 Lifr protein_coding Interval_115028 chr4 88721767 88722821 + 0 NA TTS (ENSMUSG00000086074.2) antisense-TTS (ENSMUSG00000086074.2) 171 ENSMUSG00000070923.4 ENSMUSG00000070923 ENSMUST00000094993 Klhl9 protein_coding Interval_88666 chr2 9423478 9423818 + 0 NA intron (ENSMUSG00000079604.9, intron 2 of 3) lincRNA-intron (ENSMUSG00000079604.9, intron 2 of 3) 71128 ENSMUSG00000079604.9 ENSMUSG00000079604 ENSMUST00000154223 Gm13219 lincRNA Interval_79581 chr18 33862226 33862957 + 0 NA intron (ENSMUSG00000024376.7, intron 10 of 23) protein_coding-intron (ENSMUSG00000024376.7, intron 10 of 23) 67427 ENSMUSG00000092819.1 ENSMUSG00000092819 ENSMUST00000175078 Gm23639 snoRNA Interval_33257 chr11 115504945 115505541 + 0 NA intron (ENSMUSG00000020737.12, intron 1 of 3) protein_coding-intron (ENSMUSG00000020737.12, intron 1 of 4) 9128 ENSMUSG00000020737.12 ENSMUSG00000020737 ENSMUST00000142238 Jpt1 protein_coding Interval_19656 chr10 107365889 107367227 + 0 NA intron (ENSMUSG00000019906.15, intron 2 of 5) protein_coding-intron (ENSMUSG00000019906.15, intron 2 of 5) 70801 ENSMUSG00000102934.1 ENSMUSG00000102934 ENSMUST00000194653 Gm38117 TEC Interval_103990 chr3 56320670 56321395 + 0 NA Intergenic Intergenic 124380 ENSMUSG00000077710.1 ENSMUSG00000077710 ENSMUST00000104522 Gm25727 snoRNA Interval_124810 chr5 54753223 54753731 + 0 NA Intergenic Intergenic -53857 ENSMUSG00000106126.1 ENSMUSG00000106126 ENSMUST00000197634 Gm43781 TEC Interval_156644 chr8 56294133 56295402 + 0 NA intron (ENSMUSG00000031613.9, intron 1 of 6) protein_coding-intron (ENSMUSG00000031613.9, intron 1 of 6) 182 ENSMUSG00000031613.9 ENSMUSG00000031613 ENSMUST00000034026 Hpgd protein_coding Interval_40426 chr12 104817213 104817892 + 0 NA intron (ENSMUSG00000021097.15, intron 1 of 14) protein_coding-intron (ENSMUSG00000021097.15, intron 1 of 12) -39819 ENSMUSG00000021101.2 ENSMUSG00000021101 ENSMUST00000021520 4930408O17Rik lincRNA Interval_8309 chr1 137173778 137174665 + 0 NA Intergenic Intergenic 41426 ENSMUSG00000077207.1 ENSMUSG00000077207 ENSMUST00000104019 Gm25609 snRNA Interval_95708 chr2 114563933 114564962 + 0 NA intron (ENSMUSG00000057147.13, intron 5 of 6) protein_coding-intron (ENSMUSG00000057147.13, intron 5 of 7) -89978 ENSMUSG00000084785.1 ENSMUSG00000084785 ENSMUST00000153726 Gm13972 processed_transcript Interval_65375 chr16 21987661 21988952 + 0 NA intron (ENSMUSG00000044626.13, intron 1 of 9) protein_coding-intron (ENSMUSG00000044626.13, intron 1 of 9) -11841 ENSMUSG00000044626.13 ENSMUSG00000044626 ENSMUST00000232120 Liph protein_coding Interval_142215 chr6 138872988 138873681 + 0 NA Intergenic Intergenic -13210 ENSMUSG00000107686.1 ENSMUSG00000107686 ENSMUST00000203400 Gm9038 processed_pseudogene Interval_134615 chr6 29989686 29990635 + 0 NA intron (ENSMUSG00000045709.11, intron 2 of 2) transcribed_unitary_pseudogene-intron (ENSMUSG00000045709.11, intron 2 of 2) 1772 ENSMUSG00000095989.1 ENSMUSG00000095989 ENSMUST00000178068 Gm23049 miRNA Interval_138440 chr6 88214981 88216406 + 0 NA TTS (ENSMUSG00000107776.1) TEC-TTS (ENSMUSG00000107776.1) 809 ENSMUSG00000107776.1 ENSMUSG00000107776 ENSMUST00000204350 Gm44388 TEC Interval_156752 chr8 57889236 57889434 + 0 NA intron (ENSMUSG00000096914.3, intron 7 of 12) protein_coding-intron (ENSMUSG00000096914.3, intron 2 of 7) -2408 ENSMUSG00000109753.1 ENSMUSG00000109753 ENSMUST00000210669 Gm45633 TEC Interval_172042 chr9 123828428 123828811 + 0 NA exon (ENSMUSG00000025241.16, exon 9 of 19) protein_coding-exon (ENSMUSG00000025241.16, exon 9 of 19) 15987 ENSMUSG00000025241.16 ENSMUSG00000025241 ENSMUST00000216136 Fyco1 protein_coding Interval_35380 chr12 21183284 21184032 + 0 NA intron (ENSMUSG00000052632.16, intron 7 of 9) protein_coding-intron (ENSMUSG00000052632.16, intron 2 of 26) 63665 ENSMUSG00000118655.1 ENSMUSG00000118655 ENSMUST00000172962 AC156032.1 processed_transcript Interval_146392 chr7 45664635 45666407 + 0 NA TTS (ENSMUSG00000055978.5) protein_coding-TTS (ENSMUSG00000055978.5) 787 ENSMUSG00000055978.5 ENSMUSG00000055978 ENSMUST00000210470 Fut2 protein_coding Interval_134769 chr6 31339214 31339897 + 0 NA Intergenic Intergenic -17188 ENSMUSG00000086931.1 ENSMUSG00000086931 ENSMUST00000156115 Gm14532 lincRNA Interval_69595 chr16 94519054 94520954 + 0 NA intron (ENSMUSG00000022898.13, intron 1 of 1) protein_coding-intron (ENSMUSG00000022898.13, intron 1 of 7) -15617 ENSMUSG00000022898.13 ENSMUSG00000022898 ENSMUST00000142988 Vps26c protein_coding Interval_65581 chr16 23550482 23551178 + 0 NA intron (ENSMUSG00000109783.1, intron 4 of 4) processed_transcript-intron (ENSMUSG00000109783.1, intron 3 of 3) -30182 ENSMUSG00000022887.9 ENSMUSG00000022887 ENSMUST00000229152 Masp1 protein_coding Interval_83670 chr19 3600720 3601646 + 0 NA intron (ENSMUSG00000024913.16, intron 17 of 22) protein_coding-intron (ENSMUSG00000024913.16, intron 16 of 22) -25461 ENSMUSG00000024908.15 ENSMUSG00000024908 ENSMUST00000226109 Ppp6r3 protein_coding Interval_23410 chr11 22389432 22389635 + 0 NA Intergenic Intergenic 3241 ENSMUSG00000083580.1 ENSMUSG00000083580 ENSMUST00000117789 Rpsa-ps3 processed_pseudogene Interval_95245 chr2 105134211 105134905 + 0 NA TTS (ENSMUSG00000016458.15) protein_coding-TTS (ENSMUSG00000016458.15) -8155 ENSMUSG00000074987.9 ENSMUSG00000074987 ENSMUST00000174870 Wt1os antisense Interval_102090 chr3 16966939 16967234 + 0 NA Intergenic Intergenic -143774 ENSMUSG00000088644.1 ENSMUSG00000088644 ENSMUST00000158019 Gm26485 snRNA Interval_13493 chr10 18652564 18652791 + 0 NA exon (ENSMUSG00000019852.7, exon 10 of 33) protein_coding-exon (ENSMUSG00000019852.7, exon 10 of 33) -86722 ENSMUSG00000111173.1 ENSMUSG00000111173 ENSMUST00000215943 Gm48297 processed_pseudogene Interval_116996 chr4 118846257 118847051 + 0 NA Intergenic Intergenic -7432 ENSMUSG00000083336.2 ENSMUSG00000083336 ENSMUST00000119243 Olfr1332-ps1 unprocessed_pseudogene Interval_116735 chr4 117002277 117003381 + 0 NA promoter-TSS (ENSMUSG00000046861.9) protein_coding-promoter-TSS (ENSMUSG00000046861.9) 183 ENSMUSG00000086890.1 ENSMUSG00000086890 ENSMUST00000138729 1700021J08Rik antisense Interval_86827 chr19 44173159 44173353 + 0 NA intron (ENSMUSG00000037578.4, intron 2 of 13) protein_coding-intron (ENSMUSG00000037578.4, intron 2 of 14) 19186 ENSMUSG00000037578.4 ENSMUSG00000037578 ENSMUST00000161357 Pkd2l1 protein_coding Interval_34207 chr11 121304664 121305404 + 0 NA intron (ENSMUSG00000039275.9, intron 8 of 8) protein_coding-intron (ENSMUSG00000039275.9, intron 8 of 8) 14290 ENSMUSG00000039275.9 ENSMUSG00000039275 ENSMUST00000151492 Foxk2 protein_coding Interval_167709 chr9 72217018 72217793 + 0 NA intron (ENSMUSG00000099190.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000099190.1, intron 1 of 2) 7850 ENSMUSG00000098412.1 ENSMUSG00000098412 ENSMUST00000184467 Gm7870 processed_pseudogene Interval_32567 chr11 108658875 108659677 + 0 NA intron (ENSMUSG00000020728.17, intron 1 of 5) protein_coding-intron (ENSMUSG00000020728.17, intron 21 of 27) 28759 ENSMUSG00000081016.1 ENSMUSG00000081016 ENSMUST00000121388 Olfr1397-ps1 unprocessed_pseudogene Interval_8091 chr1 135686854 135689034 + 0 NA exon (ENSMUSG00000009418.16, exon 1 of 2) protein_coding-exon (ENSMUSG00000009418.16, exon 1 of 2) -32117 ENSMUSG00000026421.14 ENSMUSG00000026421 ENSMUST00000027677 Csrp1 protein_coding Interval_68812 chr16 87246161 87247347 + 0 NA Intergenic Intergenic -107489 ENSMUSG00000044442.11 ENSMUSG00000044442 ENSMUST00000118115 N6amt1 protein_coding Interval_57455 chr15 11173971 11175278 + 0 NA intron (ENSMUSG00000047497.10, intron 3 of 23) protein_coding-intron (ENSMUSG00000047497.10, intron 3 of 23) 109806 ENSMUSG00000047497.10 ENSMUSG00000047497 ENSMUST00000228940 Adamts12 protein_coding Interval_162619 chr9 6832439 6833227 + 0 NA Intergenic Intergenic 30990 ENSMUSG00000111464.1 ENSMUSG00000111464 ENSMUST00000213261 Gm48675 processed_pseudogene Interval_138400 chr6 87870682 87872572 + 0 NA Intergenic Intergenic 20418 ENSMUSG00000107798.1 ENSMUSG00000107798 ENSMUST00000204964 Gm44064 TEC Interval_46340 chr13 64059595 64060331 + 0 NA intron (ENSMUSG00000033122.14, intron 9 of 11) protein_coding-intron (ENSMUSG00000033122.14, intron 9 of 11) 29238 ENSMUSG00000033122.14 ENSMUSG00000033122 ENSMUST00000222810 Hsd17b3 protein_coding Interval_21829 chr11 4622603 4623833 + 0 NA intron (ENSMUSG00000056288.11, intron 2 of 2) antisense-intron (ENSMUSG00000056288.11, intron 2 of 2) 3151 ENSMUSG00000079010.1 ENSMUSG00000079010 ENSMUST00000109941 Gm11032 protein_coding Interval_95212 chr2 104832724 104832979 + 0 NA intron (ENSMUSG00000027171.10, intron 5 of 5) protein_coding-intron (ENSMUSG00000027171.10, intron 5 of 5) 12672 ENSMUSG00000083856.1 ENSMUSG00000083856 ENSMUST00000117876 Gm13886 processed_pseudogene Interval_60833 chr15 77035853 77038329 + 0 NA intron (ENSMUSG00000018893.15, intron 1 of 3) protein_coding-intron (ENSMUSG00000018893.15, intron 1 of 3) -8187 ENSMUSG00000033576.12 ENSMUSG00000033576 ENSMUST00000139304 Apol6 protein_coding Interval_126271 chr5 85790803 85791228 + 0 NA Intergenic Intergenic -38612 ENSMUSG00000064555.1 ENSMUSG00000064555 ENSMUST00000082621 Gm24626 snRNA Interval_159821 chr8 104085366 104088369 + 0 NA Intergenic Intergenic 15718 ENSMUSG00000110019.1 ENSMUSG00000110019 ENSMUST00000211125 Gm8748 processed_pseudogene Interval_132613 chr5 146741100 146741801 + 0 NA intron (ENSMUSG00000029640.17, intron 4 of 6) protein_coding-intron (ENSMUSG00000029640.17, intron 6 of 8) 16998 ENSMUSG00000029640.17 ENSMUSG00000029640 ENSMUST00000124009 Usp12 protein_coding Interval_38714 chr12 81484687 81485794 + 0 NA promoter-TSS (ENSMUSG00000091803.7) protein_coding-promoter-TSS (ENSMUSG00000091803.7) -411 ENSMUSG00000091803.7 ENSMUSG00000091803 ENSMUST00000169912 Cox16 protein_coding Interval_102093 chr3 17058161 17058880 + 0 NA Intergenic Intergenic 172455 ENSMUSG00000095827.2 ENSMUSG00000095827 ENSMUST00000177874 Gm5283 processed_pseudogene Interval_23526 chr11 23131441 23131849 + 0 NA Intergenic Intergenic -20495 ENSMUSG00000086366.1 ENSMUSG00000086366 ENSMUST00000141678 1700061J23Rik lincRNA Interval_131171 chr5 135583437 135583774 + 0 NA Intergenic Intergenic -10556 ENSMUSG00000004814.10 ENSMUSG00000004814 ENSMUST00000201401 Ccl24 protein_coding Interval_12819 chr10 5823340 5825066 + 0 NA promoter-TSS (ENSMUSG00000019774.8) protein_coding-promoter-TSS (ENSMUSG00000019774.8) -8448 ENSMUSG00000019774.8 ENSMUSG00000019774 ENSMUST00000145687 Mtrf1l protein_coding Interval_4599 chr1 75369554 75370189 + 0 NA exon (ENSMUSG00000085653.7, exon 2 of 3) antisense-exon (ENSMUSG00000085653.7, exon 2 of 3) 5141 ENSMUSG00000085653.7 ENSMUSG00000085653 ENSMUST00000130095 Gm15179 antisense Interval_59622 chr15 56597097 56597695 + 0 NA Intergenic Intergenic -96156 ENSMUSG00000086541.8 ENSMUSG00000086541 ENSMUST00000165880 Has2os processed_transcript Interval_17454 chr10 76972294 76972970 + 0 NA intron (ENSMUSG00000112143.1, intron 3 of 4) lincRNA-intron (ENSMUSG00000112143.1, intron 3 of 4) 11269 ENSMUSG00000102522.1 ENSMUSG00000102522 ENSMUST00000194879 Gm37782 TEC Interval_118526 chr4 132291156 132293236 + 0 NA intron (ENSMUSG00000028899.11, intron 6 of 6) protein_coding-intron (ENSMUSG00000028899.11, intron 5 of 5) 11189 ENSMUSG00000089687.2 ENSMUSG00000089687 ENSMUST00000040411 Rab42 protein_coding Interval_108157 chr3 122048518 122048981 + 0 NA intron (ENSMUSG00000028125.14, intron 2 of 12) protein_coding-intron (ENSMUSG00000028125.14, intron 1 of 49) 24919 ENSMUSG00000104869.1 ENSMUSG00000104869 ENSMUST00000197868 Gm42544 TEC Interval_132240 chr5 143547493 143549309 + 0 NA promoter-TSS (ENSMUSG00000118332.1) protein_coding-promoter-TSS (ENSMUSG00000118332.1) -305 ENSMUSG00000118332.1 ENSMUSG00000118332 ENSMUST00000101434 Fam220a protein_coding Interval_129560 chr5 120927042 120927580 + 0 NA TTS (ENSMUSG00000118628.1) unprocessed_pseudogene-TTS (ENSMUSG00000118628.1) 4862 ENSMUSG00000118628.1 ENSMUSG00000118628 ENSMUST00000239370 AC015535.1 unprocessed_pseudogene Interval_170810 chr9 110914517 110915575 + 0 NA intron (ENSMUSG00000096393.1, intron 2 of 2) protein_coding-intron (ENSMUSG00000096393.1, intron 2 of 2) 1815 ENSMUSG00000096393.1 ENSMUSG00000096393 ENSMUST00000177678 Fam240a protein_coding Interval_38007 chr12 73880089 73880682 + 0 NA intron (ENSMUSG00000087700.2, intron 1 of 2) antisense-intron (ENSMUSG00000087700.2, intron 1 of 2) -10773 ENSMUSG00000087700.2 ENSMUSG00000087700 ENSMUST00000125308 Gm15283 antisense Interval_115218 chr4 94524726 94525047 + 0 NA intron (ENSMUSG00000028578.8, intron 4 of 5) protein_coding-intron (ENSMUSG00000028578.8, intron 4 of 5) 27854 ENSMUSG00000083359.1 ENSMUSG00000083359 ENSMUST00000118149 Gm12656 processed_pseudogene Interval_136573 chr6 55811978 55813315 + 0 NA Intergenic Intergenic -74179 ENSMUSG00000037973.6 ENSMUSG00000037973 ENSMUST00000169699 Itprid1 protein_coding Interval_54890 chr14 76026180 76026718 + 0 NA Intergenic Intergenic -15584 ENSMUSG00000067995.4 ENSMUSG00000067995 ENSMUST00000088922 Gtf2f2 protein_coding Interval_18365 chr10 85265888 85266621 + 0 NA promoter-TSS (ENSMUSG00000111752.1) processed_transcript-promoter-TSS (ENSMUSG00000111752.1) 68 ENSMUSG00000111752.1 ENSMUSG00000111752 ENSMUST00000213881 Gm38575 processed_transcript Interval_54537 chr14 70549196 70549715 + 0 NA TTS (ENSMUSG00000033589.4) protein_coding-TTS (ENSMUSG00000033589.4) 3274 ENSMUSG00000033589.4 ENSMUSG00000033589 ENSMUST00000226592 Reep4 protein_coding Interval_99901 chr2 165707263 165708837 + 0 NA intron (ENSMUSG00000017897.18, intron 6 of 7) protein_coding-intron (ENSMUSG00000017897.18, intron 5 of 15) -41193 ENSMUSG00000081758.1 ENSMUSG00000081758 ENSMUST00000118200 Gm11460 processed_pseudogene Interval_73372 chr17 36843797 36845016 + 0 NA intron (ENSMUSG00000024457.16, intron 2 of 9) protein_coding-intron (ENSMUSG00000024457.16, intron 2 of 9) -2054 ENSMUSG00000065651.1 ENSMUSG00000065651 ENSMUST00000083717 Gm25973 snoRNA Interval_55718 chr14 99277772 99279489 + 0 NA Intergenic Intergenic 13006 ENSMUSG00000100172.1 ENSMUSG00000100172 ENSMUST00000186660 Gm4412 processed_pseudogene Interval_106674 chr3 98382045 98383252 + 0 NA promoter-TSS (ENSMUSG00000050064.14) protein_coding-promoter-TSS (ENSMUSG00000050064.14) 187 ENSMUSG00000050064.14 ENSMUSG00000050064 ENSMUST00000178372 Zfp697 protein_coding Interval_136006 chr6 49412334 49413549 + 0 NA intron (ENSMUSG00000023403.14, intron 6 of 23) protein_coding-intron (ENSMUSG00000023403.14, intron 6 of 23) 11943 ENSMUSG00000090624.1 ENSMUSG00000090624 ENSMUST00000172394 Gm17060 processed_pseudogene Interval_58246 chr15 31324768 31325668 + 0 NA promoter-TSS (ENSMUSG00000022237.17) protein_coding-promoter-TSS (ENSMUSG00000022237.17) -17024 ENSMUSG00000022237.17 ENSMUSG00000022237 ENSMUST00000227391 Ankrd33b protein_coding Interval_55091 chr14 77932301 77934213 + 0 NA intron (ENSMUSG00000022014.15, intron 5 of 6) protein_coding-intron (ENSMUSG00000022014.15, intron 5 of 11) 28850 ENSMUSG00000022014.15 ENSMUSG00000022014 ENSMUST00000227903 Epsti1 protein_coding Interval_96722 chr2 127449697 127450244 + 0 NA Intergenic Intergenic -5405 ENSMUSG00000027371.10 ENSMUSG00000027371 ENSMUST00000137502 Fahd2a protein_coding Interval_133888 chr6 14380071 14380370 + 0 NA Intergenic Intergenic 9831 ENSMUSG00000107403.1 ENSMUSG00000107403 ENSMUST00000204077 Gm8820 processed_pseudogene Interval_74051 chr17 46282173 46283462 + 0 NA promoter-TSS (ENSMUSG00000012296.16) protein_coding-promoter-TSS (ENSMUSG00000012296.16) 188 ENSMUSG00000012296.16 ENSMUSG00000012296 ENSMUST00000224445 Tjap1 protein_coding Interval_115704 chr4 102758962 102760695 + 0 NA promoter-TSS (ENSMUSG00000028524.21) protein_coding-promoter-TSS (ENSMUSG00000028524.21) -637 ENSMUSG00000028524.21 ENSMUSG00000028524 ENSMUST00000140676 Sgip1 protein_coding Interval_31066 chr11 97962231 97962705 + 0 NA intron (ENSMUSG00000017417.14, intron 2 of 13) protein_coding-intron (ENSMUSG00000017417.14, intron 2 of 13) -6324 ENSMUSG00000082715.1 ENSMUSG00000082715 ENSMUST00000118176 Gm11633 processed_pseudogene Interval_139253 chr6 97581947 97582936 + 0 NA intron (ENSMUSG00000030064.16, intron 1 of 7) protein_coding-intron (ENSMUSG00000030064.16, intron 1 of 23) -1349 ENSMUSG00000108093.1 ENSMUSG00000108093 ENSMUST00000204031 Gm44102 TEC Interval_32680 chr11 109598717 109599239 + 0 NA intron (ENSMUSG00000041895.15, intron 3 of 7) protein_coding-intron (ENSMUSG00000041895.15, intron 3 of 11) 12989 ENSMUSG00000041895.15 ENSMUSG00000041895 ENSMUST00000153738 Wipi1 protein_coding Interval_167711 chr9 72235563 72236655 + 0 NA Intergenic Intergenic -5803 ENSMUSG00000099190.1 ENSMUSG00000099190 ENSMUST00000184383 Gm27188 lincRNA Interval_120411 chr4 148435581 148436133 + 0 NA TTS (ENSMUSG00000047719.2) protein_coding-TTS (ENSMUSG00000047719.2) 7628 ENSMUSG00000064648.2 ENSMUSG00000064648 ENSMUST00000082714 Gm23303 snRNA Interval_129395 chr5 119712500 119713305 + 0 NA Intergenic Intergenic -21684 ENSMUSG00000086847.1 ENSMUSG00000086847 ENSMUST00000135385 Tbx3os2 lincRNA Interval_143790 chr7 16317426 16318015 + 0 NA TTS (ENSMUSG00000002083.13) protein_coding-TTS (ENSMUSG00000002083.13) 9327 ENSMUSG00000002083.13 ENSMUSG00000002083 ENSMUST00000147267 Bbc3 protein_coding Interval_121078 chr4 152689660 152689875 + 0 NA Intergenic Intergenic -7773 ENSMUSG00000073699.3 ENSMUSG00000073699 ENSMUST00000143133 Gm833 lincRNA Interval_71104 chr17 18130340 18131069 + 0 NA intron (ENSMUSG00000091206.2, intron 5 of 5) protein_coding-intron (ENSMUSG00000091206.2, intron 5 of 5) -21183 ENSMUSG00000091350.2 ENSMUSG00000091350 ENSMUST00000169686 Vmn2r92 protein_coding Interval_1004 chr1 13826966 13827203 + 0 NA Intergenic Intergenic 22035 ENSMUSG00000102166.1 ENSMUSG00000102166 ENSMUST00000194709 Gm36947 TEC Interval_31405 chr11 100501293 100501557 + 0 NA intron (ENSMUSG00000020917.17, intron 14 of 14) protein_coding-intron (ENSMUSG00000020917.17, intron 13 of 27) 22173 ENSMUSG00000020917.17 ENSMUSG00000020917 ENSMUST00000107385 Acly protein_coding Interval_28033 chr11 72370065 72371308 + 0 NA Intergenic Intergenic -8813 ENSMUSG00000020799.16 ENSMUSG00000020799 ENSMUST00000021155 Tekt1 protein_coding Interval_96781 chr2 128159238 128159558 + 0 NA TTS (ENSMUSG00000027381.16) protein_coding-TTS (ENSMUSG00000027381.16) -30589 ENSMUSG00000085750.1 ENSMUSG00000085750 ENSMUST00000152439 Gm14009 lincRNA Interval_157745 chr8 72704756 72705033 + 0 NA exon (ENSMUSG00000048148.18, exon 16 of 19) protein_coding-exon (ENSMUSG00000048148.18, exon 16 of 19) 20580 ENSMUSG00000093276.1 ENSMUSG00000093276 ENSMUST00000175535 Gm26237 miRNA Interval_148211 chr7 79880740 79881616 + 0 NA intron (ENSMUSG00000063801.7, intron 5 of 5) protein_coding-intron (ENSMUSG00000063801.7, intron 5 of 5) -37791 ENSMUSG00000097685.2 ENSMUSG00000097685 ENSMUST00000205705 Gm26646 antisense Interval_109792 chr3 147121238 147122276 + 0 NA intron (ENSMUSG00000103334.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000103334.1, intron 1 of 1) 25573 ENSMUSG00000103334.1 ENSMUSG00000103334 ENSMUST00000193142 Gm29771 lincRNA Interval_113934 chr4 59984708 59984965 + 0 NA intron (ENSMUSG00000078689.8, intron 1 of 6) protein_coding-intron (ENSMUSG00000078689.8, intron 1 of 6) 20542 ENSMUSG00000078689.8 ENSMUSG00000078689 ENSMUST00000107520 Mup6 protein_coding Interval_49882 chr13 117596908 117597078 + 0 NA Intergenic Intergenic -5327 ENSMUSG00000021730.8 ENSMUSG00000021730 ENSMUST00000006991 Hcn1 protein_coding Interval_11206 chr1 180158576 180159751 + 0 NA intron (ENSMUSG00000026490.18, intron 18 of 20) protein_coding-intron (ENSMUSG00000026490.18, intron 32 of 34) -11012 ENSMUSG00000103636.1 ENSMUSG00000103636 ENSMUST00000195719 Gm38331 TEC Interval_159705 chr8 98515122 98515996 + 0 NA Intergenic Intergenic 159643 ENSMUSG00000080480.1 ENSMUSG00000080480 ENSMUST00000116830 Gm23494 snRNA Interval_117908 chr4 126992008 126992884 + 0 NA Intergenic Intergenic 9007 ENSMUSG00000081609.1 ENSMUSG00000081609 ENSMUST00000117303 Gm12939 processed_pseudogene Interval_155221 chr8 27903501 27904952 + 0 NA Intergenic Intergenic -143115 ENSMUSG00000064882.1 ENSMUSG00000064882 ENSMUST00000082948 Gm24202 snRNA Interval_87078 chr19 46002992 46004305 + 0 NA exon (ENSMUSG00000074811.3, exon 1 of 1) protein_coding-exon (ENSMUSG00000074811.3, exon 1 of 1) 140 ENSMUSG00000074811.3 ENSMUSG00000074811 ENSMUST00000099393 Hps6 protein_coding Interval_129235 chr5 118365648 118365888 + 0 NA Intergenic Intergenic 31562 ENSMUSG00000106812.1 ENSMUSG00000106812 ENSMUST00000201179 Gm28563 lincRNA Interval_49617 chr13 113579168 113580774 + 0 NA Intergenic Intergenic -12204 ENSMUSG00000114715.1 ENSMUSG00000114715 ENSMUST00000225395 Gm34471 lincRNA Interval_92652 chr2 62017104 62019123 + 0 NA Intergenic Intergenic -47441 ENSMUSG00000083018.1 ENSMUSG00000083018 ENSMUST00000121668 Gm13555 processed_pseudogene Interval_60386 chr15 73429689 73430479 + 0 NA Intergenic Intergenic -1174 ENSMUSG00000116174.1 ENSMUSG00000116174 ENSMUST00000229262 Gm10362 processed_pseudogene Interval_172695 chrX 43208814 43209675 + 0 NA intron (ENSMUSG00000016150.15, intron 2 of 9) protein_coding-intron (ENSMUSG00000016150.15, intron 1 of 32) -44802 ENSMUSG00000065622.1 ENSMUSG00000065622 ENSMUST00000083688 Gm24763 snRNA Interval_29759 chr11 86619372 86619641 + 0 NA intron (ENSMUSG00000018171.9, intron 7 of 11) protein_coding-intron (ENSMUSG00000018171.9, intron 7 of 11) 11520 ENSMUSG00000083992.1 ENSMUSG00000083992 ENSMUST00000117851 Gm11478 processed_pseudogene Interval_109286 chr3 138650703 138651838 + 0 NA Intergenic Intergenic -7326 ENSMUSG00000105126.1 ENSMUSG00000105126 ENSMUST00000196886 Gm43723 processed_pseudogene Interval_112565 chr4 43260612 43260979 + 0 NA intron (ENSMUSG00000028456.18, intron 38 of 40) protein_coding-intron (ENSMUSG00000028456.18, intron 36 of 38) -6390 ENSMUSG00000028457.18 ENSMUSG00000028457 ENSMUST00000102953 Atp8b5 protein_coding Interval_37384 chr12 66275625 66276655 + 0 NA Intergenic Intergenic 6875 ENSMUSG00000113531.1 ENSMUSG00000113531 ENSMUST00000222565 Gm2915 processed_pseudogene Interval_116229 chr4 108878811 108879844 + 0 NA intron (ENSMUSG00000003411.10, intron 1 of 4) protein_coding-intron (ENSMUSG00000003411.10, intron 1 of 4) 21835 ENSMUSG00000028567.8 ENSMUSG00000028567 ENSMUST00000154017 Txndc12 protein_coding Interval_68745 chr16 85444963 85445193 + 0 NA intron (ENSMUSG00000041134.15, intron 2 of 2) protein_coding-intron (ENSMUSG00000041134.15, intron 2 of 2) 105339 ENSMUSG00000041134.15 ENSMUSG00000041134 ENSMUST00000162621 Cyyr1 protein_coding Interval_126934 chr5 97417386 97417663 + 0 NA intron (ENSMUSG00000097516.7, intron 2 of 3) lincRNA-intron (ENSMUSG00000097516.7, intron 2 of 3) 25107 ENSMUSG00000097516.7 ENSMUSG00000097516 ENSMUST00000180634 4930467D21Rik lincRNA Interval_12601 chr10 3835166 3835383 + 0 NA intron (ENSMUSG00000040624.18, intron 1 of 15) protein_coding-intron (ENSMUSG00000040624.18, intron 2 of 16) 395 ENSMUSG00000040624.18 ENSMUSG00000040624 ENSMUST00000141367 Plekhg1 protein_coding Interval_106031 chr3 90977315 90978415 + 0 NA Intergenic Intergenic 39319 ENSMUSG00000106257.1 ENSMUSG00000106257 ENSMUST00000198408 Gm9023 unprocessed_pseudogene Interval_896 chr1 13051892 13052602 + 0 NA Intergenic Intergenic 7704 ENSMUSG00000104518.1 ENSMUSG00000104518 ENSMUST00000191708 Gm37162 TEC Interval_169325 chr9 96415581 96417289 + 0 NA Intergenic Intergenic 21703 ENSMUSG00000056418.3 ENSMUSG00000056418 ENSMUST00000070500 BC043934 lincRNA Interval_129994 chr5 123598942 123599805 + 0 NA intron (ENSMUSG00000049550.17, intron 6 of 11) protein_coding-intron (ENSMUSG00000049550.17, intron 19 of 24) -28828 ENSMUSG00000084552.1 ENSMUSG00000084552 ENSMUST00000122603 Gm24840 snRNA Interval_53345 chr14 56468281 56468640 + 0 NA intron (ENSMUSG00000000365.9, intron 5 of 13) protein_coding-intron (ENSMUSG00000000365.9, intron 16 of 36) -40823 ENSMUSG00000000365.9 ENSMUSG00000000365 ENSMUST00000225737 Rnf17 protein_coding Interval_36830 chr12 54489658 54490183 + 0 NA Intergenic Intergenic 27159 ENSMUSG00000113947.1 ENSMUSG00000113947 ENSMUST00000223133 Gm10465 lincRNA Interval_39083 chr12 84920046 84921083 + 0 NA exon (ENSMUSG00000042350.13, exon 20 of 20) protein_coding-exon (ENSMUSG00000042350.13, exon 20 of 20) 2416 ENSMUSG00000092006.1 ENSMUSG00000092006 ENSMUST00000163802 Gm17139 antisense Interval_160229 chr8 107278497 107279163 + 0 NA Intergenic Intergenic -14640 ENSMUSG00000003847.16 ENSMUSG00000003847 ENSMUST00000147588 Nfat5 protein_coding Interval_74752 chr17 56321302 56321894 + 0 NA intron (ENSMUSG00000001228.14, intron 15 of 16) protein_coding-intron (ENSMUSG00000001228.14, intron 15 of 16) 17191 ENSMUSG00000001228.14 ENSMUSG00000001228 ENSMUST00000139654 Uhrf1 protein_coding Interval_52199 chr14 40231815 40232669 + 0 NA Intergenic Intergenic -17001 ENSMUSG00000077019.1 ENSMUSG00000077019 ENSMUST00000103831 Gm22191 miRNA Interval_42072 chr13 7538659 7539215 + 0 NA Intergenic Intergenic 92428 ENSMUSG00000113225.1 ENSMUSG00000113225 ENSMUST00000221383 Gm36074 lincRNA Interval_21244 chr10 127437270 127437498 + 0 NA intron (ENSMUSG00000025404.15, intron 1 of 23) protein_coding-intron (ENSMUSG00000025404.15, intron 1 of 23) -22151 ENSMUSG00000025404.15 ENSMUSG00000025404 ENSMUST00000171426 R3hdm2 protein_coding Interval_115214 chr4 94504731 94505063 + 0 NA intron (ENSMUSG00000028578.8, intron 5 of 5) protein_coding-intron (ENSMUSG00000028578.8, intron 5 of 5) 7865 ENSMUSG00000083359.1 ENSMUSG00000083359 ENSMUST00000118149 Gm12656 processed_pseudogene Interval_31949 chr11 104017818 104018906 + 0 NA Intergenic Intergenic 38773 ENSMUSG00000062421.13 ENSMUSG00000062421 ENSMUST00000154089 Arf2 protein_coding Interval_151001 chr7 117551851 117553499 + 0 NA intron (ENSMUSG00000030657.11, intron 3 of 6) protein_coding-intron (ENSMUSG00000030657.11, intron 3 of 11) 77183 ENSMUSG00000030657.11 ENSMUSG00000030657 ENSMUST00000161889 Xylt1 protein_coding Interval_15896 chr10 59052186 59052415 + 0 NA intron (ENSMUSG00000037990.18, intron 4 of 9) protein_coding-intron (ENSMUSG00000037990.18, intron 4 of 9) 86757 ENSMUSG00000098653.1 ENSMUSG00000098653 ENSMUST00000183751 Gm27672 miRNA Interval_172989 chrX 60177627 60179513 + 0 NA intron (ENSMUSG00000031139.16, intron 1 of 27) protein_coding-intron (ENSMUSG00000031139.16, intron 1 of 27) -30870 ENSMUSG00000031139.16 ENSMUSG00000031139 ENSMUST00000033478 Mcf2 protein_coding Interval_172269 chrX 12139660 12140643 + 0 NA intron (ENSMUSG00000040363.15, intron 1 of 4) protein_coding-intron (ENSMUSG00000040363.15, intron 1 of 13) 20195 ENSMUSG00000040363.15 ENSMUSG00000040363 ENSMUST00000209776 Bcor protein_coding Interval_43621 chr13 34156058 34156900 + 0 NA Intergenic Intergenic -6485 ENSMUSG00000071451.10 ENSMUSG00000071451 ENSMUST00000147632 Psmg4 protein_coding Interval_111079 chr4 11703885 11705058 + 0 NA promoter-TSS (ENSMUSG00000028214.13) protein_coding-promoter-TSS (ENSMUSG00000028214.13) 14 ENSMUSG00000028214.13 ENSMUSG00000028214 ENSMUST00000029868 Gem protein_coding Interval_71478 chr17 24044328 24046894 + 0 NA exon (ENSMUSG00000050762.5, exon 6 of 6) protein_coding-exon (ENSMUSG00000050762.5, exon 6 of 6) 7467 ENSMUSG00000050762.5 ENSMUSG00000050762 ENSMUST00000059482 Prss27 protein_coding Interval_19640 chr10 106669686 106669941 + 0 NA intron (ENSMUSG00000053825.15, intron 3 of 31) protein_coding-intron (ENSMUSG00000053825.15, intron 3 of 31) -68753 ENSMUSG00000112201.1 ENSMUSG00000112201 ENSMUST00000219229 4930532I03Rik antisense Interval_59504 chr15 54717580 54717797 + 0 NA Intergenic Intergenic -28014 ENSMUSG00000037362.8 ENSMUSG00000037362 ENSMUST00000050027 Ccn3 protein_coding Interval_138462 chr6 88423662 88424178 + 0 NA intron (ENSMUSG00000033216.9, intron 1 of 5) protein_coding-intron (ENSMUSG00000033216.9, intron 1 of 6) 17943 ENSMUSG00000084582.1 ENSMUSG00000084582 ENSMUST00000122633 Gm25178 misc_RNA Interval_107869 chr3 116448935 116449369 + 0 NA promoter-TSS (ENSMUSG00000089060.1) snRNA-promoter-TSS (ENSMUSG00000089060.1) -588 ENSMUSG00000089060.1 ENSMUSG00000089060 ENSMUST00000158435 Gm22361 snRNA Interval_103222 chr3 37129297 37131207 + 0 NA Intergenic Intergenic -4293 ENSMUSG00000027720.7 ENSMUSG00000027720 ENSMUST00000029275 Il2 protein_coding Interval_43134 chr13 24551736 24552293 + 0 NA intron (ENSMUSG00000036006.20, intron 1 of 13) protein_coding-intron (ENSMUSG00000036006.20, intron 1 of 13) 50489 ENSMUSG00000036006.20 ENSMUSG00000036006 ENSMUST00000177489 Ripor2 protein_coding Interval_115294 chr4 95463503 95463731 + 0 NA Intergenic Intergenic -20339 ENSMUSG00000085835.1 ENSMUSG00000085835 ENSMUST00000155789 Gm12707 processed_transcript Interval_122554 chr5 23774257 23774484 + 0 NA exon (ENSMUSG00000057541.14, exon 1 of 1) protein_coding-exon (ENSMUSG00000057541.14, exon 1 of 1) 1298 ENSMUSG00000057541.14 ENSMUSG00000057541 ENSMUST00000195909 Pus7 protein_coding Interval_103472 chr3 42030442 42030936 + 0 NA Intergenic Intergenic -52641 ENSMUSG00000103823.1 ENSMUSG00000103823 ENSMUST00000192935 Gm7899 processed_pseudogene Interval_135027 chr6 34759527 34760466 + 0 NA intron (ENSMUSG00000029761.16, intron 6 of 12) protein_coding-intron (ENSMUSG00000029761.16, intron 7 of 12) -2864 ENSMUSG00000029761.16 ENSMUSG00000029761 ENSMUST00000132331 Cald1 protein_coding Interval_87921 chr19 57122103 57122519 + 0 NA intron (ENSMUSG00000025085.16, intron 6 of 20) protein_coding-intron (ENSMUSG00000025085.16, intron 6 of 25) -151649 ENSMUSG00000117684.1 ENSMUSG00000117684 ENSMUST00000237596 4930449E18Rik antisense Interval_9887 chr1 163828956 163829217 + 0 NA intron (ENSMUSG00000026585.13, intron 9 of 20) protein_coding-intron (ENSMUSG00000026585.13, intron 9 of 19) 49503 ENSMUSG00000026585.13 ENSMUSG00000026585 ENSMUST00000027877 Kifap3 protein_coding Interval_25654 chr11 50430337 50431851 + 0 NA promoter-TSS (ENSMUSG00000020375.9) protein_coding-promoter-TSS (ENSMUSG00000020375.9) -16519 ENSMUSG00000020375.9 ENSMUSG00000020375 ENSMUST00000129304 Rufy1 protein_coding Interval_86119 chr19 36863899 36864586 + 0 NA intron (ENSMUSG00000024811.11, intron 3 of 3) protein_coding-intron (ENSMUSG00000024811.11, intron 11 of 26) 14871 ENSMUSG00000024811.11 ENSMUSG00000024811 ENSMUST00000168654 Tnks2 protein_coding Interval_155341 chr8 31919396 31919785 + 0 NA promoter-TSS (ENSMUSG00000062991.9) protein_coding-promoter-TSS (ENSMUSG00000062991.9) -832 ENSMUSG00000118541.1 ENSMUSG00000118541 ENSMUST00000239000 AC132407.1 protein_coding Interval_77497 chr17 90263740 90264149 + 0 NA intron (ENSMUSG00000024109.18, intron 2 of 2) protein_coding-intron (ENSMUSG00000024109.18, intron 16 of 20) 1392 ENSMUSG00000092706.1 ENSMUSG00000092706 ENSMUST00000174965 Gm24510 miRNA Interval_140390 chr6 117797547 117799038 + 0 NA Intergenic Intergenic -10428 ENSMUSG00000071237.4 ENSMUSG00000071237 ENSMUST00000120444 Gemin6-ps processed_pseudogene Interval_159941 chr8 105297354 105298273 + 0 NA promoter-TSS (ENSMUSG00000014859.9) protein_coding-promoter-TSS (ENSMUSG00000014859.9) -1712 ENSMUSG00000043251.6 ENSMUSG00000043251 ENSMUST00000212261 Exoc3l protein_coding Interval_154346 chr8 14894510 14895991 + 0 NA TTS (ENSMUSG00000026317.7) protein_coding-TTS (ENSMUSG00000026317.7) 6246 ENSMUSG00000026317.7 ENSMUSG00000026317 ENSMUST00000128839 Cln8 protein_coding Interval_144121 chr7 19517648 19518497 + 0 NA promoter-TSS (ENSMUSG00000060621.6) protein_coding-promoter-TSS (ENSMUSG00000060621.6) -659 ENSMUSG00000060621.6 ENSMUSG00000060621 ENSMUST00000214205 Nkpd1 protein_coding Interval_63412 chr15 100914766 100915518 + 0 NA intron (ENSMUSG00000023033.14, intron 2 of 2) protein_coding-intron (ENSMUSG00000023033.14, intron 1 of 26) -54980 ENSMUSG00000023033.14 ENSMUSG00000023033 ENSMUST00000201246 Scn8a protein_coding Interval_45567 chr13 55923221 55924025 + 0 NA intron (ENSMUSG00000114493.2, intron 2 of 5) antisense-intron (ENSMUSG00000114493.2, intron 2 of 5) -87431 ENSMUSG00000021506.7 ENSMUSG00000021506 ENSMUST00000173618 Pitx1 protein_coding Interval_43367 chr13 29752708 29753657 + 0 NA intron (ENSMUSG00000006191.17, intron 5 of 10) protein_coding-intron (ENSMUSG00000006191.17, intron 5 of 15) -187101 ENSMUSG00000086893.1 ENSMUSG00000086893 ENSMUST00000144277 Gm11365 antisense Interval_152896 chr7 139551806 139552273 + 0 NA intron (ENSMUSG00000025477.14, intron 3 of 6) protein_coding-intron (ENSMUSG00000025477.14, intron 9 of 15) 30751 ENSMUSG00000041309.17 ENSMUSG00000041309 ENSMUST00000106095 Nkx6-2 protein_coding Interval_114313 chr4 72233983 72234192 + 0 NA Intergenic Intergenic 32739 ENSMUSG00000084910.1 ENSMUSG00000084910 ENSMUST00000122923 C630043F03Rik processed_transcript Interval_125696 chr5 73337689 73339028 + 0 NA intron (ENSMUSG00000029153.11, intron 1 of 4) protein_coding-intron (ENSMUSG00000029153.11, intron 1 of 6) 200 ENSMUSG00000029153.11 ENSMUSG00000029153 ENSMUST00000200821 Ociad2 protein_coding Interval_138788 chr6 91865688 91866017 + 0 NA Intergenic Intergenic 12133 ENSMUSG00000108310.1 ENSMUSG00000108310 ENSMUST00000206250 Gm44712 TEC Interval_111632 chr4 24883000 24883421 + 0 NA Intergenic Intergenic -14966 ENSMUSG00000028261.13 ENSMUSG00000028261 ENSMUST00000151249 Ndufaf4 protein_coding Interval_58509 chr15 35316835 35317115 + 0 NA intron (ENSMUSG00000115453.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000115453.1, intron 1 of 2) 11560 ENSMUSG00000115453.1 ENSMUSG00000115453 ENSMUST00000227345 BC048602 lincRNA Interval_77712 chr17 94592590 94592789 + 0 NA Intergenic Intergenic -15496 ENSMUSG00000117476.1 ENSMUSG00000117476 ENSMUST00000234959 Gm9416 processed_pseudogene Interval_128451 chr5 113379526 113380371 + 0 NA Intergenic Intergenic 22654 ENSMUSG00000053873.1 ENSMUSG00000053873 ENSMUST00000066573 Aym1 protein_coding Interval_61047 chr15 78942556 78943257 + 0 NA exon (ENSMUSG00000033099.10, exon 6 of 6) protein_coding-exon (ENSMUSG00000033099.10, exon 6 of 6) -5013 ENSMUSG00000033088.19 ENSMUSG00000033088 ENSMUST00000129922 Triobp protein_coding Interval_115654 chr4 101646903 101648396 + 0 NA promoter-TSS (ENSMUSG00000035212.14) protein_coding-promoter-TSS (ENSMUSG00000035212.14) -144 ENSMUSG00000035212.14 ENSMUSG00000035212 ENSMUST00000106927 Leprot protein_coding Interval_73475 chr17 37777469 37777712 + 0 NA Intergenic Intergenic 2352 ENSMUSG00000109185.1 ENSMUSG00000109185 ENSMUST00000208445 Gm18268 unprocessed_pseudogene Interval_174645 chrX 161972422 161972626 + 0 NA intron (ENSMUSG00000059493.13, intron 1 of 8) protein_coding-intron (ENSMUSG00000059493.13, intron 1 of 7) 64301 ENSMUSG00000087571.1 ENSMUSG00000087571 ENSMUST00000154188 Gm15202 antisense Interval_127139 chr5 100536622 100536947 + 0 NA intron (ENSMUSG00000035297.14, intron 5 of 5) protein_coding-intron (ENSMUSG00000035297.14, intron 6 of 9) 18327 ENSMUSG00000035297.14 ENSMUSG00000035297 ENSMUST00000123559 Cops4 protein_coding Interval_42358 chr13 12327085 12327791 + 0 NA intron (ENSMUSG00000052374.16, intron 2 of 21) protein_coding-intron (ENSMUSG00000052374.16, intron 1 of 20) -50720 ENSMUSG00000094185.2 ENSMUSG00000094185 ENSMUST00000180224 Gm5445 processed_pseudogene Interval_98278 chr2 150770209 150771312 + 0 NA exon (ENSMUSG00000033068.16, exon 14 of 14) protein_coding-exon (ENSMUSG00000033068.16, exon 14 of 14) 21679 ENSMUSG00000033068.16 ENSMUSG00000033068 ENSMUST00000139723 Entpd6 protein_coding Interval_119628 chr4 138834169 138835435 + 0 NA TTS (ENSMUSG00000058908.14) polymorphic_pseudogene-TTS (ENSMUSG00000058908.14) 1543 ENSMUSG00000058908.14 ENSMUSG00000058908 ENSMUST00000147728 Pla2g2a polymorphic_pseudogene Interval_105795 chr3 89367113 89367822 + 0 NA intron (ENSMUSG00000109293.1, intron 6 of 15) protein_coding-intron (ENSMUSG00000109293.1, intron 6 of 15) 5492 ENSMUSG00000109293.1 ENSMUSG00000109293 ENSMUST00000208216 Dcst2 protein_coding Interval_82585 chr18 75302382 75302624 + 0 NA Intergenic Intergenic -5186 ENSMUSG00000102047.1 ENSMUSG00000102047 ENSMUST00000186356 2010010A06Rik transcribed_processed_pseudogene Interval_84864 chr19 17941638 17942802 + 0 NA Intergenic Intergenic 14109 ENSMUSG00000076303.1 ENSMUSG00000076303 ENSMUST00000102348 Gm23061 miRNA Interval_58672 chr15 36931203 36932080 + 0 NA promoter-TSS (ENSMUSG00000115430.1) lincRNA-promoter-TSS (ENSMUSG00000115430.1) 45 ENSMUSG00000115430.1 ENSMUSG00000115430 ENSMUST00000227301 Gm41300 lincRNA Interval_101460 chr2 181557028 181557749 + 0 NA Intergenic Intergenic 17088 ENSMUSG00000089917.7 ENSMUSG00000089917 ENSMUST00000131949 Uckl1 protein_coding Interval_161462 chr8 120569817 120570950 + 0 NA promoter-TSS (ENSMUSG00000031822.20) protein_coding-promoter-TSS (ENSMUSG00000031822.20) 7760 ENSMUSG00000031822.20 ENSMUSG00000031822 ENSMUST00000141113 Gse1 protein_coding Interval_63770 chr15 103322528 103324262 + 0 NA exon (ENSMUSG00000000552.10, exon 1 of 7) protein_coding-exon (ENSMUSG00000000552.10, exon 1 of 7) 115 ENSMUSG00000000552.10 ENSMUSG00000000552 ENSMUST00000229551 Zfp385a protein_coding Interval_146507 chr7 46500805 46501057 + 0 NA intron (ENSMUSG00000030839.12, intron 3 of 3) protein_coding-intron (ENSMUSG00000030839.12, intron 10 of 10) 11849 ENSMUSG00000110316.1 ENSMUSG00000110316 ENSMUST00000211086 Gm45311 sense_intronic Interval_27202 chr11 64058200 64058404 + 0 NA intron (ENSMUSG00000042148.8, intron 3 of 6) protein_coding-intron (ENSMUSG00000042148.8, intron 3 of 6) 21166 ENSMUSG00000042148.8 ENSMUSG00000042148 ENSMUST00000125702 Cox10 protein_coding Interval_173479 chrX 94985487 94985988 + 0 NA Intergenic Intergenic 12946 ENSMUSG00000087522.3 ENSMUSG00000087522 ENSMUST00000142240 Gm371 processed_pseudogene Interval_45385 chr13 54799599 54800136 + 0 NA Intergenic Intergenic 10222 ENSMUSG00000025875.14 ENSMUSG00000025875 ENSMUST00000139574 Tspan17 protein_coding Interval_90238 chr2 29222233 29222811 + 0 NA intron (ENSMUSG00000035513.19, intron 2 of 5) protein_coding-intron (ENSMUSG00000035513.19, intron 2 of 8) 25603 ENSMUSG00000035513.19 ENSMUSG00000035513 ENSMUST00000149096 Ntng2 protein_coding Interval_44562 chr13 46058563 46059439 + 0 NA Intergenic Intergenic -1596 ENSMUSG00000113860.1 ENSMUSG00000113860 ENSMUST00000222657 Gm45949 lincRNA Interval_151104 chr7 118568845 118569740 + 0 NA intron (ENSMUSG00000042246.5, intron 1 of 10) protein_coding-intron (ENSMUSG00000042246.5, intron 1 of 15) 15394 ENSMUSG00000042246.5 ENSMUSG00000042246 ENSMUST00000139693 Tmc7 protein_coding Interval_125050 chr5 64115004 64115383 + 0 NA intron (ENSMUSG00000029171.12, intron 1 of 1) protein_coding-intron (ENSMUSG00000029171.12, intron 12 of 13) -7691 ENSMUSG00000093780.1 ENSMUSG00000093780 ENSMUST00000177427 Gm22395 miRNA Interval_80188 chr18 38119852 38120087 + 0 NA Intergenic Intergenic 83871 ENSMUSG00000051375.15 ENSMUSG00000051375 ENSMUST00000193828 Pcdh1 protein_coding Interval_162309 chr8 126967712 126968394 + 0 NA intron (ENSMUSG00000033931.9, intron 3 of 9) protein_coding-intron (ENSMUSG00000033931.9, intron 3 of 10) 3017 ENSMUSG00000033931.9 ENSMUSG00000033931 ENSMUST00000212583 Rbm34 protein_coding Interval_85562 chr19 28566299 28567386 + 0 NA intron (ENSMUSG00000052942.13, intron 2 of 10) protein_coding-intron (ENSMUSG00000052942.13, intron 2 of 9) 16452 ENSMUSG00000089952.1 ENSMUSG00000089952 ENSMUST00000162380 4933413C19Rik sense_intronic Interval_59015 chr15 41732671 41733418 + 0 NA intron (ENSMUSG00000022307.16, intron 1 of 6) protein_coding-intron (ENSMUSG00000022307.16, intron 3 of 15) 55867 ENSMUSG00000097232.1 ENSMUSG00000097232 ENSMUST00000180418 Gm26854 antisense Interval_145864 chr7 40787773 40788009 + 0 NA Intergenic Intergenic 33219 ENSMUSG00000108672.1 ENSMUSG00000108672 ENSMUST00000206420 Gm45008 TEC Interval_86093 chr19 36534284 36535075 + 0 NA Intergenic Intergenic -50810 ENSMUSG00000041180.13 ENSMUSG00000041180 ENSMUST00000142404 Hectd2 protein_coding Interval_46271 chr13 63278897 63281406 + 0 NA promoter-TSS (ENSMUSG00000113472.1) TEC-promoter-TSS (ENSMUSG00000113472.1) -927 ENSMUSG00000113472.1 ENSMUSG00000113472 ENSMUST00000223367 Gm47602 TEC Interval_37218 chr12 60672773 60674511 + 0 NA Intergenic Intergenic -61856 ENSMUSG00000089603.1 ENSMUSG00000089603 ENSMUST00000158978 Gm23059 snRNA Interval_30536 chr11 94992726 94993457 + 0 NA intron (ENSMUSG00000038976.12, intron 1 of 5) protein_coding-intron (ENSMUSG00000038976.12, intron 1 of 9) 211 ENSMUSG00000038976.12 ENSMUSG00000038976 ENSMUST00000107748 Ppp1r9b protein_coding Interval_141477 chr6 128490057 128491205 + 0 NA exon (ENSMUSG00000030359.14, exon 26 of 36) protein_coding-exon (ENSMUSG00000030359.14, exon 26 of 36) -2776 ENSMUSG00000030359.14 ENSMUSG00000030359 ENSMUST00000143664 Pzp protein_coding Interval_82945 chr18 79901589 79901805 + 0 NA Intergenic Intergenic -25115 ENSMUSG00000098165.1 ENSMUSG00000098165 ENSMUST00000183151 Gm26977 processed_pseudogene Interval_85600 chr19 29002590 29002898 + 0 NA TTS (ENSMUSG00000063754.7) processed_pseudogene-TTS (ENSMUSG00000063754.7) 1098 ENSMUSG00000063754.7 ENSMUSG00000063754 ENSMUST00000183196 Gm10136 processed_pseudogene Interval_81821 chr18 65001014 65001661 + 0 NA promoter-TSS (ENSMUSG00000117895.1) antisense-promoter-TSS (ENSMUSG00000117895.1) -162 ENSMUSG00000117895.1 ENSMUSG00000117895 ENSMUST00000237218 Gm50368 antisense Interval_170004 chr9 103559615 103560496 + 0 NA intron (ENSMUSG00000099616.1, intron 1 of 2) protein_coding-intron (ENSMUSG00000042757.16, intron 2 of 4) 2965 ENSMUSG00000099616.1 ENSMUSG00000099616 ENSMUST00000190332 4932413F04Rik antisense Interval_22743 chr11 14309265 14309875 + 0 NA Intergenic Intergenic -130529 ENSMUSG00000085452.1 ENSMUSG00000085452 ENSMUST00000126260 4930554G24Rik lincRNA Interval_155817 chr8 39300784 39301089 + 0 NA intron (ENSMUSG00000109827.1, intron 1 of 3) lincRNA-intron (ENSMUSG00000109827.1, intron 1 of 3) 2956 ENSMUSG00000109827.1 ENSMUSG00000109827 ENSMUST00000209966 Gm6213 lincRNA Interval_23186 chr11 20407088 20407589 + 0 NA Intergenic Intergenic -39074 ENSMUSG00000083878.3 ENSMUSG00000083878 ENSMUST00000119032 Gm12034 processed_pseudogene Interval_139009 chr6 94186857 94187121 + 0 NA intron (ENSMUSG00000045095.16, intron 2 of 2) protein_coding-intron (ENSMUSG00000045095.16, intron 1 of 21) 137045 ENSMUSG00000107545.1 ENSMUSG00000107545 ENSMUST00000204466 Gm44307 processed_pseudogene Interval_139575 chr6 101453072 101454036 + 0 NA Intergenic Intergenic -66101 ENSMUSG00000108274.1 ENSMUSG00000108274 ENSMUST00000205133 Gm44169 lincRNA Interval_79754 chr18 34918671 34919573 + 0 NA intron (ENSMUSG00000024360.8, intron 2 of 10) protein_coding-intron (ENSMUSG00000024360.8, intron 2 of 10) 12885 ENSMUSG00000024360.8 ENSMUSG00000024360 ENSMUST00000025218 Etf1 protein_coding Interval_52434 chr14 46379904 46381131 + 0 NA promoter-TSS (ENSMUSG00000079261.2) protein_coding-promoter-TSS (ENSMUSG00000079261.2) -610 ENSMUSG00000079261.2 ENSMUSG00000079261 ENSMUST00000147092 Gm15217 protein_coding Interval_19164 chr10 95244719 95245760 + 0 NA intron (ENSMUSG00000045867.10, intron 2 of 2) protein_coding-intron (ENSMUSG00000045867.10, intron 2 of 2) 69614 ENSMUSG00000112744.1 ENSMUSG00000112744 ENSMUST00000219461 Gm48880 TEC Interval_171494 chr9 118793072 118793822 + 0 NA intron (ENSMUSG00000039115.13, intron 5 of 5) protein_coding-intron (ENSMUSG00000039115.13, intron 17 of 27) 44508 ENSMUSG00000066270.3 ENSMUSG00000066270 ENSMUST00000139408 Gm10157 processed_pseudogene Interval_67576 chr16 51138675 51139384 + 0 NA Intergenic Intergenic 87899 ENSMUSG00000116706.1 ENSMUSG00000116706 ENSMUST00000231893 Gm32431 lincRNA Interval_48811 chr13 103581557 103582716 + 0 NA Intergenic Intergenic -59790 ENSMUSG00000096642.1 ENSMUSG00000096642 ENSMUST00000179897 Gm24870 snRNA Interval_70953 chr17 16726718 16728041 + 0 NA TTS (ENSMUSG00000116944.1) processed_pseudogene-TTS (ENSMUSG00000116944.1) 926 ENSMUSG00000116944.1 ENSMUSG00000116944 ENSMUST00000231367 Gm7477 processed_pseudogene Interval_37018 chr12 56477270 56477854 + 0 NA Intergenic Intergenic 23266 ENSMUSG00000112468.1 ENSMUSG00000112468 ENSMUST00000219957 Gm47720 TEC Interval_94546 chr2 92091573 92091757 + 0 NA intron (ENSMUSG00000087197.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000087197.1, intron 1 of 1) 4377 ENSMUSG00000087197.1 ENSMUSG00000087197 ENSMUST00000150482 Gm13780 lincRNA Interval_148690 chr7 84167547 84168365 + 0 NA intron (ENSMUSG00000097016.2, intron 2 of 4) bidirectional_promoter_lncRNA-intron (ENSMUSG00000097016.2, intron 2 of 3) -2609 ENSMUSG00000092743.1 ENSMUSG00000092743 ENSMUST00000175002 Gm22177 snRNA Interval_81025 chr18 53098547 53099051 + 0 NA Intergenic Intergenic -77590 ENSMUSG00000034484.8 ENSMUSG00000034484 ENSMUST00000236111 Snx2 protein_coding Interval_6119 chr1 97634064 97635246 + 0 NA exon (ENSMUSG00000044768.16, exon 3 of 3) protein_coding-exon (ENSMUSG00000044768.16, exon 3 of 3) -26176 ENSMUSG00000118489.1 ENSMUSG00000118489 ENSMUST00000238965 AC099860.1 processed_pseudogene Interval_158943 chr8 88154520 88154787 + 0 NA intron (ENSMUSG00000031657.16, intron 7 of 14) protein_coding-intron (ENSMUSG00000031657.16, intron 7 of 14) -6865 ENSMUSG00000031657.16 ENSMUSG00000031657 ENSMUST00000137452 Heatr3 protein_coding Interval_67990 chr16 62806851 62807987 + 0 NA promoter-TSS (ENSMUSG00000076424.1) miRNA-promoter-TSS (ENSMUSG00000076424.1) -930 ENSMUSG00000076424.1 ENSMUSG00000076424 ENSMUST00000102469 Gm25986 miRNA Interval_1828 chr1 34045533 34046068 + 0 NA intron (ENSMUSG00000026131.20, intron 1 of 97) protein_coding-intron (ENSMUSG00000026131.20, intron 1 of 97) 13700 ENSMUSG00000103364.1 ENSMUSG00000103364 ENSMUST00000194178 Gm38157 TEC Interval_7452 chr1 131459843 131460254 + 0 NA intron (ENSMUSG00000026425.15, intron 2 of 4) protein_coding-intron (ENSMUSG00000026425.15, intron 2 of 22) -12353 ENSMUSG00000099959.1 ENSMUSG00000099959 ENSMUST00000190146 Gm29487 processed_pseudogene Interval_84761 chr19 16353730 16354078 + 0 NA intron (ENSMUSG00000024639.5, intron 5 of 6) protein_coding-intron (ENSMUSG00000024639.5, intron 5 of 6) -38900 ENSMUSG00000098718.1 ENSMUSG00000098718 ENSMUST00000184935 Mir496b miRNA Interval_60012 chr15 63821996 63822859 + 0 NA Intergenic Intergenic 5225 ENSMUSG00000099435.6 ENSMUSG00000099435 ENSMUST00000185277 1700065I16Rik transcribed_unprocessed_pseudogene Interval_9417 chr1 156938680 156940284 + 0 NA promoter-TSS (ENSMUSG00000026594.14) protein_coding-promoter-TSS (ENSMUSG00000026594.14) 117 ENSMUSG00000026594.14 ENSMUSG00000026594 ENSMUST00000189648 Ralgps2 protein_coding Interval_45780 chr13 58031577 58032338 + 0 NA intron (ENSMUSG00000014164.15, intron 7 of 14) protein_coding-intron (ENSMUSG00000014164.15, intron 9 of 16) -8757 ENSMUSG00000077962.1 ENSMUSG00000077962 ENSMUST00000104769 Mir874 miRNA Interval_11084 chr1 179237938 179238439 + 0 NA intron (ENSMUSG00000055067.15, intron 1 of 8) protein_coding-intron (ENSMUSG00000055067.15, intron 1 of 8) 279817 ENSMUSG00000055067.15 ENSMUSG00000055067 ENSMUST00000194237 Smyd3 protein_coding Interval_102424 chr3 25398711 25399156 + 0 NA Intergenic Intergenic -147087 ENSMUSG00000087945.1 ENSMUSG00000087945 ENSMUST00000157320 Gm24250 rRNA Interval_74001 chr17 45956595 45956859 + 0 NA Intergenic Intergenic -5132 ENSMUSG00000117040.1 ENSMUSG00000117040 ENSMUST00000233512 Gm49805 lincRNA Interval_40045 chr12 100839253 100840121 + 0 NA intron (ENSMUSG00000021185.16, intron 5 of 13) protein_coding-intron (ENSMUSG00000021185.16, intron 4 of 12) -10649 ENSMUSG00000021185.16 ENSMUSG00000021185 ENSMUST00000133970 Dglucy protein_coding Interval_141398 chr6 128019103 128019643 + 0 NA intron (ENSMUSG00000030352.15, intron 2 of 2) protein_coding-intron (ENSMUSG00000030352.15, intron 3 of 8) 15632 ENSMUSG00000030352.15 ENSMUSG00000030352 ENSMUST00000127075 Tspan9 protein_coding Interval_33419 chr11 116459797 116460373 + 0 NA intron (ENSMUSG00000070331.14, intron 4 of 19) protein_coding-intron (ENSMUSG00000070331.14, intron 4 of 19) 6156 ENSMUSG00000070331.14 ENSMUSG00000070331 ENSMUST00000140697 Qrich2 protein_coding Interval_40707 chr12 107758185 107758908 + 0 NA intron (ENSMUSG00000086975.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000086975.1, intron 1 of 1) -23050 ENSMUSG00000085641.1 ENSMUSG00000085641 ENSMUST00000144556 4930465M20Rik lincRNA Interval_64100 chr16 8338916 8339387 + 0 NA Intergenic Intergenic 2158 ENSMUSG00000089593.1 ENSMUSG00000089593 ENSMUST00000158968 Gm26159 snRNA Interval_122844 chr5 26029571 26031427 + 0 NA Intergenic Intergenic -7583 ENSMUSG00000067700.5 ENSMUSG00000067700 ENSMUST00000072286 Gm5862 protein_coding Interval_49912 chr13 118176646 118176883 + 0 NA Intergenic Intergenic 129444 ENSMUSG00000114713.1 ENSMUSG00000114713 ENSMUST00000225643 Gm9633 processed_pseudogene Interval_106292 chr3 95176681 95176942 + 0 NA Intergenic Intergenic 16317 ENSMUSG00000038777.19 ENSMUSG00000038777 ENSMUST00000126597 Sema6c protein_coding Interval_60082 chr15 64748729 64748999 + 0 NA intron (ENSMUSG00000022376.8, intron 9 of 16) protein_coding-intron (ENSMUSG00000022376.8, intron 9 of 17) -68830 ENSMUSG00000094296.1 ENSMUSG00000094296 ENSMUST00000180105 Gm21798 protein_coding Interval_23850 chr11 27087429 27087791 + 0 NA promoter-TSS (ENSMUSG00000088654.1) snoRNA-promoter-TSS (ENSMUSG00000088654.1) -475 ENSMUSG00000088654.1 ENSMUSG00000088654 ENSMUST00000158029 Gm24850 snoRNA Interval_92776 chr2 65363682 65364705 + 0 NA promoter-TSS (ENSMUSG00000061171.15) protein_coding-promoter-TSS (ENSMUSG00000061171.15) -193 ENSMUSG00000061171.15 ENSMUSG00000061171 ENSMUST00000141690 Slc38a11 protein_coding Interval_153708 chr8 4868514 4869269 + 0 NA Intergenic Intergenic 7722 ENSMUSG00000062152.4 ENSMUSG00000062152 ENSMUST00000080279 Rpl21-ps14 processed_pseudogene Interval_110847 chr4 8934370 8935310 + 0 NA Intergenic Intergenic -6419 ENSMUSG00000083786.1 ENSMUSG00000083786 ENSMUST00000119493 Rps18-ps2 processed_pseudogene Interval_80139 chr18 37805979 37808332 + 0 NA exon (ENSMUSG00000102918.1, exon 1 of 4) protein_coding-exon (ENSMUSG00000102918.1, exon 1 of 4) 767 ENSMUSG00000103309.1 ENSMUSG00000103309 ENSMUST00000192003 BC037039 antisense Interval_70053 chr17 5021185 5022459 + 0 NA intron (ENSMUSG00000069729.14, intron 1 of 19) protein_coding-intron (ENSMUSG00000069729.14, intron 1 of 18) 26883 ENSMUSG00000069729.14 ENSMUSG00000069729 ENSMUST00000146703 Arid1b protein_coding Interval_137770 chr6 82254131 82254395 + 0 NA Intergenic Intergenic 12089 ENSMUSG00000108224.1 ENSMUSG00000108224 ENSMUST00000204563 Gm31861 processed_pseudogene Interval_87436 chr19 50614091 50614815 + 0 NA intron (ENSMUSG00000043531.16, intron 1 of 25) protein_coding-intron (ENSMUSG00000043531.16, intron 2 of 26) -62953 ENSMUSG00000097446.1 ENSMUSG00000097446 ENSMUST00000180848 Gm26629 antisense Interval_51861 chr14 33083923 33084245 + 0 NA intron (ENSMUSG00000051506.17, intron 31 of 61) protein_coding-intron (ENSMUSG00000051506.17, intron 30 of 58) 88819 ENSMUSG00000041673.12 ENSMUSG00000041673 ENSMUST00000123910 Lrrc18 protein_coding Interval_22666 chr11 12691773 12691969 + 0 NA promoter-TSS (ENSMUSG00000088509.1) snoRNA-promoter-TSS (ENSMUSG00000088509.1) -942 ENSMUSG00000088509.1 ENSMUSG00000088509 ENSMUST00000157884 Gm22789 snoRNA Interval_148774 chr7 86878825 86879033 + 0 NA intron (ENSMUSG00000092195.2, intron 5 of 5) transcribed_unprocessed_pseudogene-intron (ENSMUSG00000092195.2, intron 5 of 5) 19603 ENSMUSG00000092195.2 ENSMUSG00000092195 ENSMUST00000174393 Vmn2r-ps87 transcribed_unprocessed_pseudogene Interval_123092 chr5 29625058 29626079 + 0 NA intron (ENSMUSG00000039000.8, intron 13 of 13) protein_coding-intron (ENSMUSG00000039000.8, intron 13 of 22) -5345 ENSMUSG00000039000.8 ENSMUSG00000039000 ENSMUST00000199598 Ube3c protein_coding Interval_144927 chr7 28953497 28954491 + 0 NA intron (ENSMUSG00000054808.15, intron 1 of 21) protein_coding-intron (ENSMUSG00000054808.15, intron 1 of 20) 8346 ENSMUSG00000054808.15 ENSMUSG00000054808 ENSMUST00000148196 Actn4 protein_coding Interval_79876 chr18 35688194 35688411 + 0 NA intron (ENSMUSG00000024350.6, intron 5 of 6) protein_coding-intron (ENSMUSG00000024350.6, intron 3 of 7) -14923 ENSMUSG00000073598.3 ENSMUSG00000073598 ENSMUST00000097617 1700066B19Rik protein_coding Interval_100699 chr2 171761363 171761636 + 0 NA Intergenic Intergenic 200632 ENSMUSG00000086823.7 ENSMUSG00000086823 ENSMUST00000125465 1700028P15Rik processed_transcript Interval_24820 chr11 39690729 39690947 + 0 NA Intergenic Intergenic 36874 ENSMUSG00000083806.1 ENSMUSG00000083806 ENSMUST00000117479 Gm12131 processed_pseudogene Interval_101817 chr3 9696378 9696816 + 0 NA intron (ENSMUSG00000027508.15, intron 7 of 8) protein_coding-intron (ENSMUSG00000027508.15, intron 6 of 7) 40077 ENSMUSG00000103876.1 ENSMUSG00000103876 ENSMUST00000195844 Gm17806 processed_pseudogene Interval_144737 chr7 27922342 27922559 + 0 NA intron (ENSMUSG00000070709.12, intron 2 of 3) protein_coding-intron (ENSMUSG00000070709.12, intron 2 of 3) -5274 ENSMUSG00000097455.1 ENSMUSG00000097455 ENSMUST00000181644 Gm26891 antisense Interval_111288 chr4 17217262 17218244 + 0 NA Intergenic Intergenic 38608 ENSMUSG00000083572.1 ENSMUSG00000083572 ENSMUST00000121293 Gm11849 processed_pseudogene Interval_69438 chr16 93458673 93459717 + 0 NA promoter-TSS (ENSMUSG00000099968.7) lincRNA-promoter-TSS (ENSMUSG00000099968.7) -390 ENSMUSG00000099968.7 ENSMUSG00000099968 ENSMUST00000231859 1700029J03Rik lincRNA Interval_90831 chr2 32870160 32871438 + 0 NA Intergenic Intergenic 5202 ENSMUSG00000087496.1 ENSMUSG00000087496 ENSMUST00000151820 Gm13523 antisense Interval_127235 chr5 101740567 101741363 + 0 NA Intergenic Intergenic -36902 ENSMUSG00000105097.1 ENSMUSG00000105097 ENSMUST00000196076 Gm42133 lincRNA Interval_114961 chr4 87718457 87718901 + 0 NA Intergenic Intergenic 87644 ENSMUSG00000028496.17 ENSMUSG00000028496 ENSMUST00000142454 Mllt3 protein_coding Interval_60917 chr15 77841482 77842790 + 0 NA promoter-TSS (ENSMUSG00000022443.17) protein_coding-promoter-TSS (ENSMUSG00000022443.17) -1380 ENSMUSG00000084497.1 ENSMUSG00000084497 ENSMUST00000122548 Gm22107 snRNA Interval_134652 chr6 30159296 30160273 + 0 NA Intergenic Intergenic 6208 ENSMUSG00000076361.1 ENSMUSG00000076361 ENSMUST00000102406 Mir182 miRNA Interval_157303 chr8 69148935 69149536 + 0 NA intron (ENSMUSG00000036306.13, intron 1 of 3) protein_coding-intron (ENSMUSG00000036306.13, intron 1 of 3) 32995 ENSMUSG00000036306.13 ENSMUSG00000036306 ENSMUST00000184961 Lzts1 protein_coding Interval_113395 chr4 54373578 54374203 + 0 NA Intergenic Intergenic -94462 ENSMUSG00000093183.2 ENSMUSG00000093183 ENSMUST00000175442 Gm25687 misc_RNA Interval_169191 chr9 95418124 95419224 + 0 NA Intergenic Intergenic -6956 ENSMUSG00000101459.1 ENSMUSG00000101459 ENSMUST00000190263 Gm19193 processed_pseudogene Interval_62833 chr15 97323358 97324113 + 0 NA intron (ENSMUSG00000044250.8, intron 3 of 5) protein_coding-intron (ENSMUSG00000044250.8, intron 3 of 5) -20761 ENSMUSG00000116291.1 ENSMUSG00000116291 ENSMUST00000229443 Gm4383 processed_pseudogene Interval_151376 chr7 121939955 121940642 + 0 NA intron (ENSMUSG00000034951.10, intron 11 of 16) protein_coding-intron (ENSMUSG00000034951.10, intron 11 of 16) 41070 ENSMUSG00000030873.9 ENSMUSG00000030873 ENSMUST00000206079 Scnn1b protein_coding Interval_107746 chr3 112942219 112942441 + 0 NA Intergenic Intergenic -77545 ENSMUSG00000105588.1 ENSMUSG00000105588 ENSMUST00000197716 Utp14b-ps1 processed_pseudogene Interval_1167 chr1 16499402 16499616 + 0 NA intron (ENSMUSG00000025920.19, intron 2 of 12) protein_coding-intron (ENSMUSG00000025920.19, intron 2 of 12) 19797 ENSMUSG00000025920.19 ENSMUSG00000025920 ENSMUST00000144138 Stau2 protein_coding Interval_5862 chr1 92749904 92750337 + 0 NA Intergenic Intergenic 10360 ENSMUSG00000099665.1 ENSMUSG00000099665 ENSMUST00000187845 Gm29482 lincRNA Interval_34246 chr11 121593831 121594071 + 0 NA intron (ENSMUSG00000039230.14, intron 26 of 38) protein_coding-intron (ENSMUSG00000039230.14, intron 26 of 38) -4365 ENSMUSG00000039230.14 ENSMUSG00000039230 ENSMUST00000151666 Tbcd protein_coding Interval_31023 chr11 97765973 97767011 + 0 NA promoter-TSS (ENSMUSG00000018541.10) protein_coding-promoter-TSS (ENSMUSG00000018541.10) -1568 ENSMUSG00000084168.3 ENSMUSG00000084168 ENSMUST00000120130 Atp5l2-ps processed_pseudogene Interval_60975 chr15 78424625 78425344 + 0 NA promoter-TSS (ENSMUSG00000115854.1) lincRNA-promoter-TSS (ENSMUSG00000115854.1) -791 ENSMUSG00000115854.1 ENSMUSG00000115854 ENSMUST00000229780 Gm36644 lincRNA Interval_36611 chr12 51419329 51419495 + 0 NA intron (ENSMUSG00000020952.10, intron 14 of 24) protein_coding-intron (ENSMUSG00000020952.10, intron 14 of 24) 41831 ENSMUSG00000020952.10 ENSMUSG00000020952 ENSMUST00000218138 Scfd1 protein_coding Interval_19068 chr10 94171447 94173257 + 0 NA intron (ENSMUSG00000005897.14, intron 9 of 13) protein_coding-intron (ENSMUSG00000005897.14, intron 10 of 14) 12221 ENSMUSG00000065296.1 ENSMUSG00000065296 ENSMUST00000083362 Gm26122 snRNA Interval_36510 chr12 47217344 47218099 + 0 NA Intergenic Intergenic 17730 ENSMUSG00000112215.1 ENSMUSG00000112215 ENSMUST00000218294 Gm2089 processed_pseudogene Interval_157711 chr8 72451496 72451985 + 0 NA intron (ENSMUSG00000052794.13, intron 4 of 7) protein_coding-intron (ENSMUSG00000052794.13, intron 4 of 7) -6150 ENSMUSG00000052794.13 ENSMUSG00000052794 ENSMUST00000139130 1700030K09Rik protein_coding Interval_123595 chr5 33683809 33684357 + 0 NA Intergenic Intergenic -1109 ENSMUSG00000106971.1 ENSMUSG00000106971 ENSMUST00000201254 Gm42965 processed_pseudogene Interval_17561 chr10 77770247 77770677 + 0 NA TTS (ENSMUSG00000095817.1) protein_coding-TTS (ENSMUSG00000095817.1) 863 ENSMUSG00000095817.1 ENSMUSG00000095817 ENSMUST00000168298 Gm3238 protein_coding Interval_157912 chr8 75636381 75637472 + 0 NA intron (ENSMUSG00000031620.16, intron 7 of 13) protein_coding-intron (ENSMUSG00000031620.16, intron 6 of 12) -40741 ENSMUSG00000103054.1 ENSMUSG00000103054 ENSMUST00000192721 Gm38270 TEC Interval_9426 chr1 157009387 157009873 + 0 NA intron (ENSMUSG00000101768.1, intron 2 of 2) lincRNA-intron (ENSMUSG00000101768.1, intron 2 of 2) -33917 ENSMUSG00000103325.1 ENSMUSG00000103325 ENSMUST00000193527 Gm10531 TEC Interval_70475 chr17 10465019 10465454 + 0 NA intron (ENSMUSG00000089633.2, intron 1 of 1) protein_coding-intron (ENSMUSG00000037196.6, intron 4 of 4) 9020 ENSMUSG00000089633.2 ENSMUSG00000089633 ENSMUST00000160738 A230009B12Rik antisense Interval_36370 chr12 42364798 42365412 + 0 NA Intergenic Intergenic 83389 ENSMUSG00000093214.1 ENSMUSG00000093214 ENSMUST00000175473 Gm25248 miRNA Interval_73016 chr17 34144318 34145204 + 0 NA promoter-TSS (ENSMUSG00000037548.15) protein_coding-promoter-TSS (ENSMUSG00000037548.15) 1454 ENSMUSG00000037548.15 ENSMUSG00000037548 ENSMUST00000171231 H2-DMb2 protein_coding Interval_25752 chr11 51502126 51502478 + 0 NA intron (ENSMUSG00000063564.13, intron 2 of 28) protein_coding-intron (ENSMUSG00000063564.13, intron 2 of 28) -72130 ENSMUSG00000063564.13 ENSMUSG00000063564 ENSMUST00000151098 Col23a1 protein_coding Interval_157927 chr8 76385627 76385870 + 0 NA intron (ENSMUSG00000110485.1, intron 1 of 9) lincRNA-intron (ENSMUSG00000110485.1, intron 1 of 9) 9976 ENSMUSG00000110595.1 ENSMUSG00000110595 ENSMUST00000212126 Gm7990 processed_pseudogene Interval_24504 chr11 33799746 33800043 + 0 NA intron (ENSMUSG00000053519.17, intron 1 of 8) protein_coding-intron (ENSMUSG00000053519.17, intron 1 of 7) 94344 ENSMUSG00000087328.1 ENSMUSG00000087328 ENSMUST00000125068 Gm12120 antisense Interval_112163 chr4 35063233 35063824 + 0 NA intron (ENSMUSG00000073910.10, intron 2 of 3) protein_coding-intron (ENSMUSG00000073910.10, intron 2 of 3) -88528 ENSMUSG00000042993.6 ENSMUSG00000042993 ENSMUST00000058595 Ifnk protein_coding Interval_87419 chr19 49827532 49827960 + 0 NA Intergenic Intergenic -40609 ENSMUSG00000117697.1 ENSMUSG00000117697 ENSMUST00000236762 Siah1-ps1 processed_pseudogene Interval_78469 chr18 13134357 13134659 + 0 NA Intergenic Intergenic -2947 ENSMUSG00000117447.1 ENSMUSG00000117447 ENSMUST00000234509 Gm5240 processed_pseudogene Interval_37335 chr12 65188222 65188426 + 0 NA intron (ENSMUSG00000113233.1, intron 3 of 3) lincRNA-intron (ENSMUSG00000113233.1, intron 3 of 3) 5944 ENSMUSG00000113228.1 ENSMUSG00000113228 ENSMUST00000221147 4930471E15Rik lincRNA Interval_40809 chr12 108540985 108541550 + 0 NA intron (ENSMUSG00000097788.2, intron 1 of 3) antisense-intron (ENSMUSG00000097788.2, intron 1 of 4) 14197 ENSMUSG00000097788.2 ENSMUSG00000097788 ENSMUST00000220796 Gm16596 antisense Interval_33329 chr11 115964763 115964976 + 0 NA exon (ENSMUSG00000020755.9, exon 10 of 10) protein_coding-exon (ENSMUSG00000020755.9, exon 10 of 10) -9856 ENSMUSG00000020758.15 ENSMUSG00000020758 ENSMUST00000130286 Itgb4 protein_coding Interval_16970 chr10 70206432 70206821 + 0 NA intron (ENSMUSG00000019933.7, intron 1 of 2) protein_coding-intron (ENSMUSG00000019933.7, intron 1 of 2) 1916 ENSMUSG00000019933.7 ENSMUSG00000019933 ENSMUST00000189468 Mrln protein_coding Interval_161506 chr8 120803246 120804543 + 0 NA intron (ENSMUSG00000092329.1, intron 1 of 15) protein_coding-intron (ENSMUSG00000092329.1, intron 1 of 15) 67535 ENSMUSG00000041515.10 ENSMUSG00000041515 ENSMUST00000160594 Irf8 protein_coding Interval_46227 chr13 62764016 62764290 + 0 NA Intergenic Intergenic 3414 ENSMUSG00000096098.1 ENSMUSG00000096098 ENSMUST00000178651 Mir713 miRNA Interval_170456 chr9 108104593 108106562 + 0 NA exon (ENSMUSG00000032589.14, exon 7 of 12) protein_coding-exon (ENSMUSG00000032589.14, exon 7 of 12) -2331 ENSMUSG00000106657.1 ENSMUSG00000106657 ENSMUST00000198370 Gm47303 miRNA Interval_80496 chr18 42760073 42760308 + 0 NA intron (ENSMUSG00000024500.20, intron 1 of 1) protein_coding-intron (ENSMUSG00000024500.20, intron 1 of 8) -137731 ENSMUSG00000117926.1 ENSMUSG00000117926 ENSMUST00000236808 C030004G16Rik lincRNA Interval_119880 chr4 140657857 140658832 + 0 NA intron (ENSMUSG00000040964.16, intron 1 of 27) protein_coding-intron (ENSMUSG00000040964.16, intron 1 of 27) -21409 ENSMUSG00000086159.1 ENSMUSG00000086159 ENSMUST00000141469 Gm13025 lincRNA Interval_7216 chr1 127928520 127929017 + 0 NA intron (ENSMUSG00000036104.12, intron 15 of 24) protein_coding-intron (ENSMUSG00000036104.12, intron 15 of 23) -30748 ENSMUSG00000099760.1 ENSMUSG00000099760 ENSMUST00000186230 Gm28800 antisense Interval_11213 chr1 180214533 180215613 + 0 NA Intergenic Intergenic -2672 ENSMUSG00000104520.1 ENSMUSG00000104520 ENSMUST00000193705 Gm37336 lincRNA Interval_60317 chr15 72809139 72810804 + 0 NA exon (ENSMUSG00000106847.1, exon 1 of 1) sense_intronic-exon (ENSMUSG00000106847.1, exon 1 of 1) 353 ENSMUSG00000106847.1 ENSMUSG00000106847 ENSMUST00000202826 Peg13 sense_intronic Interval_58989 chr15 41418561 41420214 + 0 NA Intergenic Intergenic -176229 ENSMUSG00000116178.1 ENSMUSG00000116178 ENSMUST00000229823 Gm49529 processed_pseudogene Interval_16060 chr10 60419583 60420111 + 0 NA intron (ENSMUSG00000012819.15, intron 19 of 65) protein_coding-intron (ENSMUSG00000012819.15, intron 19 of 66) 19943 ENSMUSG00000090439.3 ENSMUSG00000090439 ENSMUST00000218360 Gm17455 protein_coding Interval_161415 chr8 120333836 120335736 + 0 NA intron (ENSMUSG00000031822.20, intron 1 of 2) protein_coding-intron (ENSMUSG00000092329.1, intron 1 of 15) -106556 ENSMUSG00000097960.1 ENSMUSG00000097960 ENSMUST00000183235 A330074K22Rik lincRNA Interval_75228 chr17 64920371 64920622 + 0 NA Intergenic Intergenic 24356 ENSMUSG00000077691.1 ENSMUSG00000077691 ENSMUST00000104503 Gm25344 snoRNA Interval_94695 chr2 93439539 93440772 + 0 NA intron (ENSMUSG00000027215.13, intron 1 of 8) protein_coding-intron (ENSMUSG00000027215.13, intron 2 of 9) -18148 ENSMUSG00000099238.1 ENSMUSG00000099238 ENSMUST00000184769 Mir7001 miRNA Interval_145950 chr7 42579937 42580193 + 0 NA exon (ENSMUSG00000092335.1, exon 4 of 4) protein_coding-exon (ENSMUSG00000092335.1, exon 4 of 4) -1477 ENSMUSG00000094462.1 ENSMUSG00000094462 ENSMUST00000179470 Gm21028 protein_coding Interval_148530 chr7 82203347 82204795 + 0 NA intron (ENSMUSG00000030638.13, intron 1 of 5) protein_coding-intron (ENSMUSG00000030638.13, intron 1 of 8) 28915 ENSMUSG00000030638.13 ENSMUSG00000030638 ENSMUST00000178526 Sh3gl3 protein_coding Interval_132828 chr5 148174564 148174809 + 0 NA intron (ENSMUSG00000029651.16, intron 2 of 3) protein_coding-intron (ENSMUSG00000029651.16, intron 4 of 14) 9691 ENSMUSG00000066554.6 ENSMUSG00000066554 ENSMUST00000150411 Gm10167 processed_pseudogene Interval_164689 chr9 40613295 40613509 + 0 NA intron (ENSMUSG00000111504.1, intron 2 of 3) lincRNA-intron (ENSMUSG00000111504.1, intron 2 of 3) 2984 ENSMUSG00000111504.1 ENSMUSG00000111504 ENSMUST00000216936 Gm48284 lincRNA Interval_3136 chr1 53872146 53872550 + 0 NA intron (ENSMUSG00000042807.15, intron 17 of 28) protein_coding-intron (ENSMUSG00000042807.15, intron 17 of 28) -5836 ENSMUSG00000042807.15 ENSMUSG00000042807 ENSMUST00000146850 Hecw2 protein_coding Interval_26543 chr11 58716130 58718240 + 0 NA TTS (ENSMUSG00000108265.2) protein_coding-TTS (ENSMUSG00000108265.2) 6829 ENSMUSG00000108265.2 ENSMUSG00000108265 ENSMUST00000189911 Olfr318 protein_coding Interval_159831 chr8 104160802 104161097 + 0 NA Intergenic Intergenic 8243 ENSMUSG00000109909.1 ENSMUSG00000109909 ENSMUST00000210429 Gm45663 TEC Interval_144300 chr7 24373600 24373821 + 0 NA intron (ENSMUSG00000054342.8, intron 1 of 3) protein_coding-intron (ENSMUSG00000054342.8, intron 1 of 8) -9344 ENSMUSG00000054342.8 ENSMUSG00000054342 ENSMUST00000206910 Kcnn4 protein_coding Interval_51583 chr14 30515210 30515380 + 0 NA intron (ENSMUSG00000021962.9, intron 1 of 4) protein_coding-intron (ENSMUSG00000021962.9, intron 6 of 9) -8412 ENSMUSG00000021962.9 ENSMUSG00000021962 ENSMUST00000225934 Dcp1a protein_coding Interval_162287 chr8 126784619 126785679 + 0 NA Intergenic Intergenic -26815 ENSMUSG00000110626.1 ENSMUSG00000110626 ENSMUST00000212695 Gm45805 lincRNA Interval_125771 chr5 74035681 74036022 + 0 NA promoter-TSS (ENSMUSG00000054814.14) protein_coding-promoter-TSS (ENSMUSG00000054814.14) 3583 ENSMUSG00000086234.3 ENSMUSG00000086234 ENSMUST00000152787 Usp46os2 processed_transcript Interval_129833 chr5 122643424 122644720 + 0 NA promoter-TSS (ENSMUSG00000029468.17) protein_coding-promoter-TSS (ENSMUSG00000029468.17) -6352 ENSMUSG00000029468.17 ENSMUSG00000029468 ENSMUST00000197042 P2rx7 protein_coding Interval_153433 chr7 144762841 144763221 + 0 NA promoter-TSS (ENSMUSG00000103394.1) TEC-promoter-TSS (ENSMUSG00000103394.1) -108 ENSMUSG00000103394.1 ENSMUSG00000103394 ENSMUST00000193475 Gm10152 TEC Interval_64868 chr16 16825433 16826759 + 0 NA intron (ENSMUSG00000022783.11, intron 2 of 2) protein_coding-intron (ENSMUSG00000022783.11, intron 2 of 10) 3224 ENSMUSG00000022783.11 ENSMUSG00000022783 ENSMUST00000141835 Spag6l protein_coding Interval_45433 chr13 55139688 55139948 + 0 NA Intergenic Intergenic -6270 ENSMUSG00000091768.1 ENSMUSG00000091768 ENSMUST00000164344 Gm17617 protein_coding Interval_103208 chr3 36798222 36798423 + 0 NA Intergenic Intergenic 26636 ENSMUSG00000084027.1 ENSMUSG00000084027 ENSMUST00000120538 Gm12376 processed_pseudogene Interval_38520 chr12 79844714 79845023 + 0 NA Intergenic Intergenic 80626 ENSMUSG00000112765.1 ENSMUSG00000112765 ENSMUST00000219857 9430078K24Rik lincRNA Interval_55572 chr14 92920376 92921095 + 0 NA Intergenic Intergenic -28033 ENSMUSG00000115444.1 ENSMUSG00000115444 ENSMUST00000226166 Gm48963 processed_pseudogene Interval_90806 chr2 32701510 32701710 + 0 NA intron (ENSMUSG00000009566.12, intron 2 of 9) protein_coding-intron (ENSMUSG00000009566.12, intron 2 of 8) 10643 ENSMUSG00000009555.16 ENSMUSG00000009555 ENSMUST00000155205 Cdk9 protein_coding Interval_83792 chr19 4737753 4738618 + 0 NA exon (ENSMUSG00000067889.6, exon 16 of 37) protein_coding-exon (ENSMUSG00000067889.6, exon 16 of 37) 17106 ENSMUSG00000067889.6 ENSMUSG00000067889 ENSMUST00000238162 Sptbn2 protein_coding Interval_160034 chr8 105936066 105938108 + 0 NA promoter-TSS (ENSMUSG00000031897.9) protein_coding-promoter-TSS (ENSMUSG00000031897.9) -60 ENSMUSG00000031897.9 ENSMUSG00000031897 ENSMUST00000212044 Psmb10 protein_coding Interval_11511 chr1 182340772 182342073 + 0 NA exon (ENSMUSG00000047539.9, exon 1 of 5) protein_coding-exon (ENSMUSG00000047539.9, exon 1 of 5) 149 ENSMUSG00000047539.9 ENSMUSG00000047539 ENSMUST00000194213 Fbxo28 protein_coding Interval_40718 chr12 107894912 107895304 + 0 NA Intergenic Intergenic 108306 ENSMUSG00000048251.15 ENSMUSG00000048251 ENSMUST00000109891 Bcl11b protein_coding Interval_61122 chr15 79374525 79375300 + 0 NA TTS (ENSMUSG00000088901.1) miRNA-TTS (ENSMUSG00000088901.1) 388 ENSMUSG00000088901.1 ENSMUSG00000088901 ENSMUST00000158276 Mir1943 miRNA Interval_95330 chr2 106649583 106650716 + 0 NA intron (ENSMUSG00000085218.7, intron 1 of 2) processed_transcript-intron (ENSMUSG00000085218.7, intron 1 of 6) 185 ENSMUSG00000085218.7 ENSMUSG00000085218 ENSMUST00000139514 BB218582 processed_transcript Interval_1459 chr1 23748223 23748743 + 0 NA Intergenic Intergenic -13270 ENSMUSG00000026156.8 ENSMUSG00000026156 ENSMUST00000140583 B3gat2 protein_coding Interval_125025 chr5 63946332 63946596 + 0 NA intron (ENSMUSG00000047881.14, intron 1 of 7) protein_coding-intron (ENSMUSG00000047881.14, intron 1 of 7) -15550 ENSMUSG00000047881.14 ENSMUSG00000047881 ENSMUST00000127314 Rell1 protein_coding Interval_2874 chr1 47076219 47077421 + 0 NA Intergenic Intergenic 9032 ENSMUSG00000101921.1 ENSMUSG00000101921 ENSMUST00000186233 Gm28825 processed_pseudogene Interval_7617 chr1 132525697 132526247 + 0 NA intron (ENSMUSG00000053024.14, intron 7 of 21) protein_coding-intron (ENSMUSG00000053024.14, intron 8 of 22) 16893 ENSMUSG00000053024.14 ENSMUSG00000053024 ENSMUST00000186530 Cntn2 protein_coding Interval_3983 chr1 65417866 65418158 + 0 NA Intergenic Intergenic 3109 ENSMUSG00000100503.1 ENSMUSG00000100503 ENSMUST00000191528 Gm28927 unprocessed_pseudogene Interval_67067 chr16 42493483 42495271 + 0 NA Intergenic Intergenic -169549 ENSMUSG00000116679.1 ENSMUSG00000116679 ENSMUST00000232064 Gm49739 processed_pseudogene Interval_162576 chr9 4810857 4811850 + 0 NA Intergenic Intergenic -15834 ENSMUSG00000025892.16 ENSMUSG00000025892 ENSMUST00000163309 Gria4 protein_coding Interval_119185 chr4 136070046 136071814 + 0 NA Intergenic Intergenic 4042 ENSMUSG00000082877.1 ENSMUSG00000082877 ENSMUST00000121307 Gm13009 processed_pseudogene Interval_105415 chr3 86095283 86095698 + 0 NA intron (ENSMUSG00000028082.14, intron 8 of 20) protein_coding-intron (ENSMUSG00000028082.14, intron 2 of 14) -5044 ENSMUSG00000065847.1 ENSMUSG00000065847 ENSMUST00000083913 Gm25188 snoRNA Interval_140764 chr6 121129265 121131370 + 0 NA intron (ENSMUSG00000051586.17, intron 1 of 14) protein_coding-intron (ENSMUSG00000051586.17, intron 1 of 14) 13519 ENSMUSG00000108096.1 ENSMUSG00000108096 ENSMUST00000203344 Minpp1-ps processed_pseudogene Interval_32368 chr11 107177257 107177874 + 0 NA TTS (ENSMUSG00000018433.14) protein_coding-TTS (ENSMUSG00000018433.14) -5333 ENSMUSG00000081103.1 ENSMUSG00000081103 ENSMUST00000117751 Rps12-ps26 processed_pseudogene Interval_98861 chr2 155624633 155625167 + 0 NA intron (ENSMUSG00000074652.3, intron 21 of 41) protein_coding-intron (ENSMUSG00000074652.3, intron 21 of 41) 2020 ENSMUSG00000076312.1 ENSMUSG00000076312 ENSMUST00000102357 Mir499 miRNA Interval_102871 chr3 32433429 32433829 + 0 NA intron (ENSMUSG00000027665.13, intron 1 of 20) protein_coding-intron (ENSMUSG00000027665.13, intron 1 of 20) -20958 ENSMUSG00000103039.1 ENSMUSG00000103039 ENSMUST00000192994 Gm37123 TEC Interval_48450 chr13 99112002 99112508 + 0 NA Intergenic Intergenic 11494 ENSMUSG00000097848.2 ENSMUSG00000097848 ENSMUST00000224929 Gm807 lincRNA Interval_57146 chr15 6938583 6938864 + 0 NA Intergenic Intergenic -57314 ENSMUSG00000104334.1 ENSMUSG00000104334 ENSMUST00000192751 Gm38282 TEC Interval_56149 chr14 107447766 107448763 + 0 NA Intergenic Intergenic 77980 ENSMUSG00000115510.1 ENSMUSG00000115510 ENSMUST00000227311 Gm9334 processed_pseudogene Interval_69636 chr16 94769543 94769725 + 0 NA intron (ENSMUSG00000043301.16, intron 3 of 3) protein_coding-intron (ENSMUSG00000043301.16, intron 3 of 4) 47740 ENSMUSG00000116641.1 ENSMUSG00000116641 ENSMUST00000232585 Gm41505 antisense Interval_143710 chr7 15859984 15860227 + 0 NA Intergenic Intergenic 19767 ENSMUSG00000041578.15 ENSMUSG00000041578 ENSMUST00000132563 Crx protein_coding Interval_115796 chr4 104514525 104515182 + 0 NA intron (ENSMUSG00000028519.16, intron 1 of 5) protein_coding-intron (ENSMUSG00000028519.16, intron 1 of 5) -90443 ENSMUSG00000028519.16 ENSMUSG00000028519 ENSMUST00000149672 Dab1 protein_coding Interval_73006 chr17 34098856 34099147 + 0 NA promoter-TSS (ENSMUSG00000117772.1) lincRNA-promoter-TSS (ENSMUSG00000117772.1) -928 ENSMUSG00000117772.1 ENSMUSG00000117772 ENSMUST00000237628 Gm50333 lincRNA Interval_170728 chr9 110366213 110366568 + 0 NA intron (ENSMUSG00000032485.14, intron 2 of 2) protein_coding-intron (ENSMUSG00000032485.14, intron 3 of 22) 4773 ENSMUSG00000032485.14 ENSMUSG00000032485 ENSMUST00000196424 Scap protein_coding Interval_119026 chr4 135066591 135067590 + 0 NA Intergenic Intergenic 53357 ENSMUSG00000086884.1 ENSMUSG00000086884 ENSMUST00000146152 Gm16225 lincRNA Interval_88963 chr2 13657614 13658423 + 0 NA intron (ENSMUSG00000003418.11, intron 7 of 7) protein_coding-intron (ENSMUSG00000003418.11, intron 7 of 7) -14498 ENSMUSG00000104354.1 ENSMUSG00000104354 ENSMUST00000195289 Gm37126 antisense Interval_121913 chr5 9513294 9514181 + 0 NA intron (ENSMUSG00000003974.6, intron 3 of 5) protein_coding-intron (ENSMUSG00000003974.6, intron 3 of 5) 88870 ENSMUSG00000106637.1 ENSMUSG00000106637 ENSMUST00000199761 Gm42455 TEC Interval_133548 chr6 6481233 6482308 + 0 NA intron (ENSMUSG00000093658.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000093658.1, intron 1 of 2) -1252 ENSMUSG00000093380.1 ENSMUSG00000093380 ENSMUST00000176654 Gm20685 lincRNA Interval_157129 chr8 65815709 65816334 + 0 NA intron (ENSMUSG00000036469.16, intron 1 of 7) protein_coding-intron (ENSMUSG00000036469.16, intron 1 of 7) 1574 ENSMUSG00000083905.1 ENSMUSG00000083905 ENSMUST00000118929 Gm15355 processed_pseudogene Interval_58296 chr15 31932495 31932943 + 0 NA Intergenic Intergenic -117232 ENSMUSG00000115561.1 ENSMUSG00000115561 ENSMUST00000227417 Gm49285 TEC Interval_128016 chr5 110296543 110296746 + 0 NA intron (ENSMUSG00000007080.14, intron 11 of 23) protein_coding-intron (ENSMUSG00000007080.14, intron 12 of 48) -10623 ENSMUSG00000029499.11 ENSMUSG00000029499 ENSMUST00000126882 Pxmp2 protein_coding Interval_26316 chr11 56105590 56105893 + 0 NA Intergenic Intergenic -64731 ENSMUSG00000037393.2 ENSMUSG00000037393 ENSMUST00000037682 Nmur2 protein_coding Interval_15868 chr10 58558477 58560527 + 0 NA intron (ENSMUSG00000038010.9, intron 13 of 15) protein_coding-intron (ENSMUSG00000038010.9, intron 13 of 15) 4235 ENSMUSG00000112670.1 ENSMUSG00000112670 ENSMUST00000219887 Gm18042 processed_pseudogene Interval_37030 chr12 56587601 56588223 + 0 NA intron (ENSMUSG00000098172.7, intron 2 of 2) antisense-intron (ENSMUSG00000098172.7, intron 2 of 2) -3157 ENSMUSG00000092515.8 ENSMUSG00000092515 ENSMUST00000182261 C87198 lincRNA Interval_173150 chrX 73570811 73571423 + 0 NA TTS (ENSMUSG00000031376.15) protein_coding-TTS (ENSMUSG00000031376.15) 13006 ENSMUSG00000118463.1 ENSMUSG00000118463 ENSMUST00000238737 Gm9730 unitary_pseudogene Interval_25869 chr11 52261173 52262585 + 0 NA intron (ENSMUSG00000000782.16, intron 3 of 10) protein_coding-intron (ENSMUSG00000000782.16, intron 2 of 9) 12998 ENSMUSG00000000782.16 ENSMUSG00000000782 ENSMUST00000238914 Tcf7 protein_coding Interval_167634 chr9 71447524 71448197 + 0 NA Intergenic Intergenic 38045 ENSMUSG00000032199.13 ENSMUSG00000032199 ENSMUST00000233263 Polr2m protein_coding Interval_4375 chr1 73389846 73390310 + 0 NA TTS (ENSMUSG00000099877.6) lincRNA-TTS (ENSMUSG00000099877.6) -2168 ENSMUSG00000098697.1 ENSMUSG00000098697 ENSMUST00000183977 Gm27315 misc_RNA Interval_88088 chr19 58962107 58962870 + 0 NA intron (ENSMUSG00000048029.10, intron 6 of 10) protein_coding-intron (ENSMUSG00000048029.10, intron 9 of 13) 9311 ENSMUSG00000048029.10 ENSMUSG00000048029 ENSMUST00000201123 Eno4 protein_coding Interval_170594 chr9 109122697 109123210 + 0 NA Intergenic Intergenic 17452 ENSMUSG00000053646.13 ENSMUSG00000053646 ENSMUST00000194734 Plxnb1 protein_coding Interval_158995 chr8 88560149 88560490 + 0 NA exon (ENSMUSG00000110187.1, exon 1 of 1) TEC-exon (ENSMUSG00000110187.1, exon 1 of 1) 286 ENSMUSG00000110187.1 ENSMUSG00000110187 ENSMUST00000209918 Gm45496 TEC Interval_89800 chr2 25524369 25525162 + 0 NA intron (ENSMUSG00000026942.13, intron 6 of 8) protein_coding-intron (ENSMUSG00000026942.13, intron 8 of 10) 14375 ENSMUSG00000026942.13 ENSMUSG00000026942 ENSMUST00000114234 Traf2 protein_coding Interval_149389 chr7 98063654 98063990 + 0 NA intron (ENSMUSG00000030761.16, intron 35 of 46) protein_coding-intron (ENSMUSG00000030761.16, intron 36 of 47) 27306 ENSMUSG00000030761.16 ENSMUSG00000030761 ENSMUST00000131632 Myo7a protein_coding Interval_24997 chr11 42768837 42769138 + 0 NA Intergenic Intergenic -128508 ENSMUSG00000084627.1 ENSMUSG00000084627 ENSMUST00000122678 Gm25543 misc_RNA Interval_105162 chr3 83030315 83031300 + 0 NA intron (ENSMUSG00000028001.16, intron 4 of 5) protein_coding-intron (ENSMUSG00000028001.16, intron 4 of 4) 4592 ENSMUSG00000028001.16 ENSMUSG00000028001 ENSMUST00000166581 Fga protein_coding Interval_108354 chr3 125012673 125013204 + 0 NA Intergenic Intergenic 30335 ENSMUSG00000098033.2 ENSMUSG00000098033 ENSMUST00000182285 Gm9381 processed_pseudogene Interval_30949 chr11 97361824 97363590 + 0 NA exon (ENSMUSG00000038485.6, exon 1 of 10) protein_coding-exon (ENSMUSG00000038485.6, exon 1 of 10) 272 ENSMUSG00000038485.6 ENSMUSG00000038485 ENSMUST00000149212 Socs7 protein_coding Interval_95488 chr2 110137209 110137936 + 0 NA intron (ENSMUSG00000027160.16, intron 2 of 2) protein_coding-intron (ENSMUSG00000027160.16, intron 2 of 2) -59317 ENSMUSG00000085444.1 ENSMUSG00000085444 ENSMUST00000130416 Gm13936 antisense Interval_102858 chr3 32337797 32338638 + 0 NA exon (ENSMUSG00000027663.12, exon 6 of 6) protein_coding-exon (ENSMUSG00000027663.12, exon 6 of 6) 27797 ENSMUSG00000027663.12 ENSMUSG00000027663 ENSMUST00000195055 Zmat3 protein_coding Interval_120625 chr4 149750586 149750825 + 0 NA intron (ENSMUSG00000028982.9, intron 5 of 6) protein_coding-intron (ENSMUSG00000028982.9, intron 5 of 6) 2187 ENSMUSG00000085403.1 ENSMUSG00000085403 ENSMUST00000129397 Gm13068 antisense Interval_153516 chr7 145337300 145338097 + 0 NA Intergenic Intergenic 22863 ENSMUSG00000051207.7 ENSMUSG00000051207 ENSMUST00000062163 Mrgprd protein_coding Interval_146942 chr7 56092631 56095486 + 0 NA intron (ENSMUSG00000030451.16, intron 8 of 18) protein_coding-intron (ENSMUSG00000030451.16, intron 9 of 92) 26074 ENSMUSG00000030451.16 ENSMUSG00000030451 ENSMUST00000205678 Herc2 protein_coding Interval_131747 chr5 139619141 139620086 + 0 NA Intergenic Intergenic 75715 ENSMUSG00000029546.12 ENSMUSG00000029546 ENSMUST00000174792 Uncx protein_coding Interval_71295 chr17 21985239 21985540 + 0 NA intron (ENSMUSG00000053347.15, intron 1 of 5) protein_coding-intron (ENSMUSG00000053347.15, intron 1 of 3) -16595 ENSMUSG00000117025.1 ENSMUSG00000117025 ENSMUST00000232730 Gm49950 processed_pseudogene Interval_73803 chr17 43866120 43866386 + 0 NA intron (ENSMUSG00000039601.16, intron 2 of 4) protein_coding-intron (ENSMUSG00000039601.16, intron 2 of 4) 95588 ENSMUSG00000088576.1 ENSMUSG00000088576 ENSMUST00000157951 Gm24532 misc_RNA Interval_169040 chr9 90760607 90760969 + 0 NA Intergenic Intergenic -13246 ENSMUSG00000100663.1 ENSMUSG00000100663 ENSMUST00000187176 Gm29604 processed_pseudogene Interval_150618 chr7 112850746 112851734 + 0 NA intron (ENSMUSG00000055320.18, intron 4 of 7) protein_coding-intron (ENSMUSG00000055320.18, intron 5 of 13) -102722 ENSMUSG00000098132.1 ENSMUSG00000098132 ENSMUST00000182858 Rassf10 protein_coding Interval_64847 chr16 16505700 16508470 + 0 NA intron (ENSMUSG00000022788.16, intron 1 of 8) protein_coding-intron (ENSMUSG00000022788.16, intron 1 of 16) -35238 ENSMUSG00000089861.1 ENSMUSG00000089861 ENSMUST00000160015 Gm16139 processed_pseudogene Interval_158970 chr8 88313791 88314075 + 0 NA intron (ENSMUSG00000031659.13, intron 1 of 18) protein_coding-intron (ENSMUSG00000031659.13, intron 9 of 27) 13554 ENSMUSG00000031659.13 ENSMUSG00000031659 ENSMUST00000210688 Adcy7 protein_coding Interval_130751 chr5 130152578 130153143 + 0 NA TTS (ENSMUSG00000034110.8) protein_coding-TTS (ENSMUSG00000034110.8) 7936 ENSMUSG00000034110.8 ENSMUSG00000034110 ENSMUST00000144467 Kctd7 protein_coding Interval_138717 chr6 91372076 91372821 + 0 NA intron (ENSMUSG00000030093.7, intron 3 of 3) protein_coding-intron (ENSMUSG00000030093.7, intron 3 of 3) -7351 ENSMUSG00000030093.7 ENSMUSG00000030093 ENSMUST00000132936 Wnt7a protein_coding Interval_52782 chr14 49860369 49860846 + 0 NA Intergenic Intergenic 41392 ENSMUSG00000048933.8 ENSMUSG00000048933 ENSMUST00000213271 Olfr722 protein_coding Interval_112826 chr4 45322759 45323532 + 0 NA intron (ENSMUSG00000028322.11, intron 1 of 3) protein_coding-intron (ENSMUSG00000028322.11, intron 1 of 3) 9047 ENSMUSG00000035601.9 ENSMUSG00000035601 ENSMUST00000145756 Trmt10b protein_coding Interval_53365 chr14 56689215 56690418 + 0 NA intron (ENSMUSG00000079184.10, intron 2 of 2) protein_coding-intron (ENSMUSG00000079184.10, intron 9 of 13) 1435 ENSMUSG00000079184.10 ENSMUSG00000079184 ENSMUST00000152370 Mphosph8 protein_coding Interval_120285 chr4 145193956 145195483 + 0 NA intron (ENSMUSG00000020220.16, intron 1 of 4) protein_coding-intron (ENSMUSG00000020220.16, intron 1 of 69) -39233 ENSMUSG00000020220.16 ENSMUSG00000020220 ENSMUST00000132700 Vps13d protein_coding Interval_193 JH792829.1 155427 156801 + 0 NA NA NA NA NA Interval_74299 chr17 48640509 48640703 + 0 NA Intergenic Intergenic 22783 ENSMUSG00000077708.1 ENSMUSG00000077708 ENSMUST00000104520 Gm24071 snoRNA Interval_139896 chr6 112497556 112498997 + 0 NA Intergenic Intergenic -9882 ENSMUSG00000049112.9 ENSMUSG00000049112 ENSMUST00000204027 Oxtr protein_coding Interval_97575 chr2 140036005 140038063 + 0 NA intron (ENSMUSG00000039033.11, intron 1 of 4) protein_coding-intron (ENSMUSG00000039033.11, intron 4 of 13) 5180 ENSMUSG00000039033.11 ENSMUSG00000039033 ENSMUST00000124949 Tasp1 protein_coding Interval_98922 chr2 156038819 156039614 + 0 NA intron (ENSMUSG00000013338.16, intron 20 of 44) protein_coding-intron (ENSMUSG00000013338.16, intron 20 of 44) -2588 ENSMUSG00000013338.16 ENSMUSG00000013338 ENSMUST00000130764 Fer1l4 protein_coding Interval_98975 chr2 156431588 156433670 + 0 NA intron (ENSMUSG00000027624.20, intron 1 of 21) protein_coding-intron (ENSMUSG00000027624.20, intron 1 of 21) 14979 ENSMUSG00000086872.1 ENSMUSG00000086872 ENSMUST00000142310 Gm14225 antisense Interval_39230 chr12 86066685 86067438 + 0 NA intron (ENSMUSG00000021253.7, intron 3 of 6) protein_coding-intron (ENSMUSG00000021253.7, intron 3 of 6) -2112 ENSMUSG00000103301.1 ENSMUSG00000103301 ENSMUST00000192206 Gm37804 TEC Interval_48247 chr13 97417183 97417725 + 0 NA Intergenic Intergenic 41220 ENSMUSG00000114425.1 ENSMUSG00000114425 ENSMUST00000223964 Gm33447 lincRNA Interval_100774 chr2 172470889 172471216 + 0 NA Intergenic Intergenic -1468 ENSMUSG00000027505.2 ENSMUSG00000027505 ENSMUST00000029007 Fam209 protein_coding Interval_110421 chr3 157943767 157944047 + 0 NA Intergenic Intergenic 18687 ENSMUSG00000028177.13 ENSMUSG00000028177 ENSMUST00000196971 1810013D15Rik antisense Interval_49727 chr13 114278261 114279413 + 0 NA Intergenic Intergenic 5544 ENSMUSG00000114707.1 ENSMUSG00000114707 ENSMUST00000224003 Gm47558 TEC Interval_134657 chr6 30180193 30180668 + 0 NA Intergenic Intergenic 7537 ENSMUSG00000103108.2 ENSMUSG00000103108 ENSMUST00000194541 Rncr4 lincRNA Interval_108229 chr3 122635311 122635781 + 0 NA Intergenic Intergenic -2275 ENSMUSG00000106562.1 ENSMUSG00000106562 ENSMUST00000199912 Gm5981 processed_pseudogene Interval_98026 chr2 146874406 146874592 + 0 NA intron (ENSMUSG00000074749.10, intron 4 of 13) protein_coding-intron (ENSMUSG00000074749.10, intron 4 of 13) 18590 ENSMUSG00000074749.10 ENSMUSG00000074749 ENSMUST00000135595 Kiz protein_coding Interval_130311 chr5 125579066 125579421 + 0 NA intron (ENSMUSG00000070498.3, intron 1 of 8) protein_coding-intron (ENSMUSG00000070498.3, intron 1 of 8) 47469 ENSMUSG00000070498.3 ENSMUSG00000070498 ENSMUST00000184422 Tmem132b protein_coding Interval_66489 chr16 34237234 34237650 + 0 NA intron (ENSMUSG00000061751.16, intron 11 of 30) protein_coding-intron (ENSMUSG00000061751.16, intron 14 of 59) -141414 ENSMUSG00000061751.16 ENSMUSG00000061751 ENSMUST00000132569 Kalrn protein_coding Interval_135585 chr6 41030287 41031047 + 0 NA exon (ENSMUSG00000029882.5, exon 5 of 5) protein_coding-exon (ENSMUSG00000029882.5, exon 5 of 5) 4402 ENSMUSG00000103157.1 ENSMUSG00000103157 ENSMUST00000192831 Gm38294 processed_pseudogene Interval_93983 chr2 80497529 80497978 + 0 NA Intergenic Intergenic -1477 ENSMUSG00000082494.1 ENSMUSG00000082494 ENSMUST00000119857 Gm13687 processed_pseudogene Interval_154620 chr8 22095905 22096075 + 0 NA intron (ENSMUSG00000037738.11, intron 4 of 6) protein_coding-intron (ENSMUSG00000037738.11, intron 12 of 19) 11903 ENSMUSG00000037738.11 ENSMUSG00000037738 ENSMUST00000213644 Nek5 protein_coding Interval_29791 chr11 86824623 86824869 + 0 NA Intergenic Intergenic -23658 ENSMUSG00000018425.18 ENSMUSG00000018425 ENSMUST00000131798 Dhx40 protein_coding Interval_153584 chr8 3532029 3532428 + 0 NA intron (ENSMUSG00000004565.15, intron 17 of 26) protein_coding-intron (ENSMUSG00000004565.15, intron 19 of 33) -4558 ENSMUSG00000004565.15 ENSMUSG00000004565 ENSMUST00000208691 Pnpla6 protein_coding Interval_31788 chr11 102863903 102866234 + 0 NA TTS (ENSMUSG00000020929.14) protein_coding-TTS (ENSMUSG00000020929.14) 901 ENSMUSG00000020929.14 ENSMUSG00000020929 ENSMUST00000148209 Eftud2 protein_coding Interval_1138 chr1 16035993 16036468 + 0 NA Intergenic Intergenic -17105 ENSMUSG00000100652.1 ENSMUSG00000100652 ENSMUST00000185778 Gm7634 processed_pseudogene Interval_86110 chr19 36802168 36802696 + 0 NA Intergenic Intergenic -16216 ENSMUSG00000117938.1 ENSMUSG00000117938 ENSMUST00000236351 Gm50112 processed_pseudogene Interval_61378 chr15 81212777 81213518 + 0 NA Intergenic Intergenic -3987 ENSMUSG00000116122.1 ENSMUSG00000116122 ENSMUST00000230413 Gm49537 processed_pseudogene Interval_139979 chr6 113166455 113167067 + 0 NA Intergenic Intergenic 27182 ENSMUSG00000042873.11 ENSMUSG00000042873 ENSMUST00000203665 Lhfpl4 protein_coding Interval_74587 chr17 53553998 53554656 + 0 NA Intergenic Intergenic -14876 ENSMUSG00000044957.3 ENSMUSG00000044957 ENSMUST00000056198 Pp2d1 protein_coding Interval_30788 chr11 96464021 96465002 + 0 NA promoter-TSS (ENSMUSG00000057058.16) protein_coding-promoter-TSS (ENSMUSG00000057058.16) 36 ENSMUSG00000075586.4 ENSMUSG00000075586 ENSMUST00000153012 Gm11529 processed_transcript Interval_165114 chr9 44640910 44641222 + 0 NA TTS (ENSMUSG00000032097.10) protein_coding-TTS (ENSMUSG00000032097.10) 6871 ENSMUSG00000111030.1 ENSMUSG00000111030 ENSMUST00000217540 Gm47234 TEC Interval_96693 chr2 127218965 127219174 + 0 NA exon (ENSMUSG00000003660.10, exon 14 of 45) protein_coding-exon (ENSMUSG00000003660.10, exon 14 of 45) -10815 ENSMUSG00000044145.2 ENSMUSG00000044145 ENSMUST00000150956 1810024B03Rik protein_coding Interval_174403 chrX 151315599 151315831 + 0 NA TTS (ENSMUSG00000041245.13) protein_coding-TTS (ENSMUSG00000041245.13) -4309 ENSMUSG00000084771.8 ENSMUSG00000084771 ENSMUST00000175825 A230072E10Rik antisense Interval_133011 chr5 149267114 149267481 + 0 NA intron (ENSMUSG00000060063.9, intron 1 of 4) protein_coding-intron (ENSMUSG00000060063.9, intron 1 of 4) 13926 ENSMUSG00000064704.1 ENSMUSG00000064704 ENSMUST00000082770 n-R5s180 rRNA Interval_85516 chr19 27776996 27777285 + 0 NA intron (ENSMUSG00000040929.17, intron 15 of 16) protein_coding-intron (ENSMUSG00000040929.17, intron 14 of 15) -73133 ENSMUSG00000088266.1 ENSMUSG00000088266 ENSMUST00000157641 Gm24782 snoRNA Interval_127699 chr5 106789075 106789623 + 0 NA Intergenic Intergenic -50585 ENSMUSG00000106301.1 ENSMUSG00000106301 ENSMUST00000197334 Gm8365 processed_pseudogene Interval_165219 chr9 45421349 45421792 + 0 NA intron (ENSMUSG00000097074.2, intron 2 of 4) antisense-intron (ENSMUSG00000097074.2, intron 2 of 4) -7480 ENSMUSG00000111186.1 ENSMUSG00000111186 ENSMUST00000216490 Gm48135 TEC Interval_147085 chr7 62348055 62349273 + 0 NA exon (ENSMUSG00000033585.5, exon 1 of 1) protein_coding-exon (ENSMUSG00000033585.5, exon 1 of 1) 2095 ENSMUSG00000033585.5 ENSMUSG00000033585 ENSMUST00000038775 Ndn protein_coding Interval_100015 chr2 166522920 166523784 + 0 NA promoter-TSS (ENSMUSG00000085682.2) transcribed_processed_pseudogene-promoter-TSS (ENSMUSG00000085682.2) -14178 ENSMUSG00000085682.2 ENSMUSG00000085682 ENSMUST00000123480 Gm14267 transcribed_processed_pseudogene Interval_111612 chr4 24558829 24559117 + 0 NA intron (ENSMUSG00000045751.16, intron 13 of 16) protein_coding-intron (ENSMUSG00000045751.16, intron 12 of 22) 62522 ENSMUSG00000045751.16 ENSMUSG00000045751 ENSMUST00000123984 Mms22l protein_coding Interval_156201 chr8 45950406 45951378 + 0 NA TTS (ENSMUSG00000087542.1) processed_pseudogene-TTS (ENSMUSG00000087542.1) 1280 ENSMUSG00000087542.1 ENSMUSG00000087542 ENSMUST00000127561 Gm15878 processed_pseudogene Interval_33180 chr11 115012352 115013195 + 0 NA TTS (ENSMUSG00000089753.9) protein_coding-TTS (ENSMUSG00000089753.9) 3420 ENSMUSG00000089753.9 ENSMUSG00000089753 ENSMUST00000092463 Cd300ld2 protein_coding Interval_10275 chr1 167872113 167872712 + 0 NA Intergenic Intergenic -131727 ENSMUSG00000093538.2 ENSMUSG00000093538 ENSMUST00000177351 Gm20711 antisense Interval_144066 chr7 19269548 19273000 + 0 NA intron (ENSMUSG00000030403.9, intron 1 of 12) protein_coding-intron (ENSMUSG00000030403.9, intron 1 of 12) -4728 ENSMUSG00000030403.9 ENSMUSG00000030403 ENSMUST00000206229 Vasp protein_coding Interval_106896 chr3 101657370 101657632 + 0 NA Intergenic Intergenic -34288 ENSMUSG00000106070.1 ENSMUSG00000106070 ENSMUST00000196442 Gm43135 lincRNA Interval_43338 chr13 29368459 29369159 + 0 NA intron (ENSMUSG00000006191.17, intron 13 of 16) protein_coding-intron (ENSMUSG00000006191.17, intron 13 of 15) -132189 ENSMUSG00000086423.1 ENSMUSG00000086423 ENSMUST00000137593 Gm11364 sense_intronic Interval_108515 chr3 127853352 127854319 + 0 NA Intergenic Intergenic -7764 ENSMUSG00000105550.1 ENSMUSG00000105550 ENSMUST00000195996 Gm35585 lincRNA Interval_164326 chr9 35361918 35362115 + 0 NA TTS (ENSMUSG00000103259.1) TEC-TTS (ENSMUSG00000103259.1) 1097 ENSMUSG00000103259.1 ENSMUSG00000103259 ENSMUST00000193707 2610105M22Rik TEC Interval_61257 chr15 80289144 80290090 + 0 NA intron (ENSMUSG00000022416.15, intron 1 of 36) protein_coding-intron (ENSMUSG00000022416.15, intron 1 of 36) -25371 ENSMUSG00000051518.8 ENSMUSG00000051518 ENSMUST00000229962 Rps19bp1 protein_coding Interval_164827 chr9 42275591 42276083 + 0 NA exon (ENSMUSG00000111074.1, exon 2 of 3) lincRNA-exon (ENSMUSG00000111074.1, exon 2 of 3) 4041 ENSMUSG00000111074.1 ENSMUSG00000111074 ENSMUST00000213341 Gm36435 lincRNA Interval_71053 chr17 17504617 17504839 + 0 NA Intergenic Intergenic 4385 ENSMUSG00000116532.1 ENSMUSG00000116532 ENSMUST00000232178 Gm5232 processed_pseudogene Interval_145896 chr7 41528854 41530364 + 0 NA Intergenic Intergenic -30192 ENSMUSG00000092592.1 ENSMUSG00000092592 ENSMUST00000094532 Gm20449 protein_coding Interval_87909 chr19 57051197 57051641 + 0 NA intron (ENSMUSG00000025085.16, intron 12 of 22) protein_coding-intron (ENSMUSG00000025085.16, intron 15 of 25) -114181 ENSMUSG00000025083.18 ENSMUSG00000025083 ENSMUST00000132851 Afap1l2 protein_coding Interval_16081 chr10 60606290 60607896 + 0 NA intron (ENSMUSG00000012819.15, intron 4 of 7) protein_coding-intron (ENSMUSG00000012819.15, intron 2 of 66) 145690 ENSMUSG00000020100.15 ENSMUSG00000020100 ENSMUST00000144989 Slc29a3 protein_coding Interval_156683 chr8 57199337 57199871 + 0 NA Intergenic Intergenic 92448 ENSMUSG00000110327.1 ENSMUSG00000110327 ENSMUST00000209260 Gm17994 processed_pseudogene Interval_61613 chr15 82958409 82958843 + 0 NA TTS (ENSMUSG00000092751.1) miRNA-TTS (ENSMUSG00000092751.1) 670 ENSMUSG00000092751.1 ENSMUSG00000092751 ENSMUST00000175010 Mir3080 miRNA Interval_20846 chr10 121494021 121494964 + 0 NA Intergenic Intergenic 5506 ENSMUSG00000112539.1 ENSMUSG00000112539 ENSMUST00000218056 Gm40787 lincRNA Interval_36161 chr12 37163877 37164064 + 0 NA intron (ENSMUSG00000036144.6, intron 1 of 2) protein_coding-intron (ENSMUSG00000036144.6, intron 1 of 2) 55430 ENSMUSG00000036144.6 ENSMUSG00000036144 ENSMUST00000041183 Meox2 protein_coding Interval_117509 chr4 124276917 124278998 + 0 NA intron (ENSMUSG00000103541.1, intron 2 of 2) TEC-intron (ENSMUSG00000103541.1, intron 2 of 2) 1220 ENSMUSG00000103541.1 ENSMUSG00000103541 ENSMUST00000193103 Gm37667 TEC Interval_174274 chrX 142965688 142967293 + 0 NA exon (ENSMUSG00000042225.3, exon 1 of 6) protein_coding-exon (ENSMUSG00000042225.3, exon 1 of 6) 238 ENSMUSG00000042225.3 ENSMUSG00000042225 ENSMUST00000041317 Ammecr1 protein_coding Interval_95405 chr2 108614513 108614785 + 0 NA Intergenic Intergenic -36260 ENSMUSG00000083347.1 ENSMUSG00000083347 ENSMUST00000121126 Gm13913 processed_pseudogene Interval_84394 chr19 10602639 10603645 + 0 NA intron (ENSMUSG00000034371.9, intron 2 of 17) protein_coding-intron (ENSMUSG00000034371.9, intron 1 of 16) 2290 ENSMUSG00000034371.9 ENSMUSG00000034371 ENSMUST00000236478 Tkfc protein_coding Interval_41933 chr13 4771129 4772245 + 0 NA promoter-TSS (ENSMUSG00000053499.4) lincRNA-promoter-TSS (ENSMUSG00000053499.4) 36 ENSMUSG00000053499.4 ENSMUSG00000053499 ENSMUST00000065956 Gm5444 lincRNA Interval_163558 chr9 22095814 22096449 + 0 NA Intergenic Intergenic 3618 ENSMUSG00000111446.1 ENSMUSG00000111446 ENSMUST00000214545 Gm6581 processed_pseudogene Interval_169867 chr9 102632282 102634311 + 0 NA intron (ENSMUSG00000035048.13, intron 2 of 2) protein_coding-intron (ENSMUSG00000035048.13, intron 3 of 3) 4784 ENSMUSG00000035048.13 ENSMUSG00000035048 ENSMUST00000190354 Anapc13 protein_coding Interval_139493 chr6 100532382 100532602 + 0 NA intron (ENSMUSG00000101553.1, intron 2 of 3) lincRNA-intron (ENSMUSG00000101553.1, intron 2 of 3) 5092 ENSMUSG00000101553.1 ENSMUSG00000101553 ENSMUST00000187986 1700049E22Rik lincRNA Interval_8037 chr1 135349185 135349520 + 0 NA intron (ENSMUSG00000048096.7, intron 1 of 2) protein_coding-intron (ENSMUSG00000048096.7, intron 1 of 2) 4470 ENSMUSG00000087859.1 ENSMUSG00000087859 ENSMUST00000157234 Gm22796 snRNA Interval_77916 chr18 5437175 5437376 + 0 NA Intergenic Intergenic -66793 ENSMUSG00000117617.1 ENSMUSG00000117617 ENSMUST00000234572 Gm50065 lincRNA Interval_33738 chr11 118207724 118209114 + 0 NA intron (ENSMUSG00000017132.17, intron 1 of 12) protein_coding-intron (ENSMUSG00000017132.17, intron 1 of 12) -3240 ENSMUSG00000080810.1 ENSMUSG00000080810 ENSMUST00000118713 Gm11737 processed_pseudogene Interval_45394 chr13 54842035 54842309 + 0 NA Intergenic Intergenic -1268 ENSMUSG00000086097.1 ENSMUSG00000086097 ENSMUST00000148974 Gm16250 processed_pseudogene Interval_93543 chr2 73943648 73944512 + 0 NA Intergenic Intergenic 16589 ENSMUSG00000083072.2 ENSMUSG00000083072 ENSMUST00000119237 Gm13668 processed_pseudogene Interval_39755 chr12 97037006 97038135 + 0 NA Intergenic Intergenic 64894 ENSMUSG00000112635.1 ENSMUSG00000112635 ENSMUST00000217786 Gm47397 lincRNA Interval_151211 chr7 119720208 119721116 + 0 NA TTS (ENSMUSG00000109233.1) lincRNA-TTS (ENSMUSG00000109233.1) 102 ENSMUSG00000030942.8 ENSMUSG00000030942 ENSMUST00000209175 Thumpd1 protein_coding Interval_163437 chr9 21435721 21435958 + 0 NA intron (ENSMUSG00000033335.17, intron 1 of 2) protein_coding-intron (ENSMUSG00000033335.17, intron 1 of 20) 10871 ENSMUSG00000033335.17 ENSMUSG00000033335 ENSMUST00000174243 Dnm2 protein_coding Interval_2280 chr1 37644165 37644593 + 0 NA intron (ENSMUSG00000026090.16, intron 2 of 9) protein_coding-intron (ENSMUSG00000026090.16, intron 3 of 3) -16343 ENSMUSG00000104365.1 ENSMUSG00000104365 ENSMUST00000192005 4930470B04Rik TEC Interval_103442 chr3 41590871 41591160 + 0 NA promoter-TSS (ENSMUSG00000025764.14) protein_coding-promoter-TSS (ENSMUSG00000025764.14) -27317 ENSMUSG00000103843.1 ENSMUSG00000103843 ENSMUST00000192060 Gm31266 antisense Interval_159568 chr8 95504110 95505398 + 0 NA Intergenic Intergenic 8307 ENSMUSG00000110427.1 ENSMUSG00000110427 ENSMUST00000212927 4933406B17Rik lincRNA Interval_138136 chr6 85395700 85397412 + 0 NA Intergenic Intergenic -27512 ENSMUSG00000068302.8 ENSMUSG00000068302 ENSMUST00000174469 Noto protein_coding Interval_73906 chr17 45415166 45415555 + 0 NA intron (ENSMUSG00000023932.9, intron 1 of 5) protein_coding-intron (ENSMUSG00000023932.9, intron 8 of 15) 18181 ENSMUSG00000023932.9 ENSMUSG00000023932 ENSMUST00000232910 Cdc5l protein_coding Interval_173068 chrX 70333560 70334002 + 0 NA Intergenic Intergenic 27310 ENSMUSG00000035847.15 ENSMUSG00000035847 ENSMUST00000130519 Ids protein_coding Interval_36552 chr12 49391057 49392061 + 0 NA exon (ENSMUSG00000089922.2, exon 4 of 4) protein_coding-exon (ENSMUSG00000089922.2, exon 4 of 4) 900 ENSMUSG00000104861.1 ENSMUSG00000104861 ENSMUST00000145291 3110039M20Rik lincRNA Interval_70426 chr17 10119265 10119522 + 0 NA Intergenic Intergenic 171556 ENSMUSG00000117206.1 ENSMUSG00000117206 ENSMUST00000233132 Gm49809 processed_pseudogene Interval_152632 chr7 135592384 135592930 + 0 NA promoter-TSS (ENSMUSG00000041836.10) protein_coding-promoter-TSS (ENSMUSG00000041836.10) -731 ENSMUSG00000041836.10 ENSMUSG00000041836 ENSMUST00000211092 Ptpre protein_coding Interval_77937 chr18 5911139 5911791 + 0 NA Intergenic Intergenic -33718 ENSMUSG00000117508.1 ENSMUSG00000117508 ENSMUST00000234953 Gm34804 lincRNA Interval_46990 chr13 73970327 73971542 + 0 NA intron (ENSMUSG00000069189.5, intron 2 of 9) protein_coding-intron (ENSMUSG00000069189.5, intron 2 of 9) 7072 ENSMUSG00000069189.5 ENSMUSG00000069189 ENSMUST00000222951 Zdhhc11 protein_coding Interval_101503 chr3 3104421 3104727 + 0 NA Intergenic Intergenic -76817 ENSMUSG00000098307.1 ENSMUSG00000098307 ENSMUST00000184213 Gm27460 miRNA Interval_41267 chr12 112276409 112278312 + 0 NA Intergenic Intergenic -72207 ENSMUSG00000113282.1 ENSMUSG00000113282 ENSMUST00000220716 Gm20368 processed_pseudogene Interval_136134 chr6 51411295 51411967 + 0 NA Intergenic Intergenic -9412 ENSMUSG00000108236.1 ENSMUSG00000108236 ENSMUST00000204546 0610033M10Rik lincRNA Interval_103784 chr3 52868167 52868553 + 0 NA Intergenic Intergenic 59306 ENSMUSG00000104401.1 ENSMUSG00000104401 ENSMUST00000194274 Gm20750 lincRNA Interval_169115 chr9 92769735 92769992 + 0 NA intron (ENSMUSG00000101734.1, intron 1 of 4) lincRNA-intron (ENSMUSG00000101734.1, intron 1 of 4) 52407 ENSMUSG00000101734.1 ENSMUSG00000101734 ENSMUST00000188610 4933400C23Rik lincRNA Interval_138247 chr6 86577115 86577809 + 0 NA intron (ENSMUSG00000097048.7, intron 1 of 2) antisense-intron (ENSMUSG00000097048.7, intron 1 of 2) -3301 ENSMUSG00000093162.1 ENSMUSG00000093162 ENSMUST00000175421 Gm22184 miRNA Interval_57626 chr15 12910703 12911501 + 0 NA intron (ENSMUSG00000022191.16, intron 26 of 34) protein_coding-intron (ENSMUSG00000022191.16, intron 26 of 34) -44620 ENSMUSG00000115807.1 ENSMUSG00000115807 ENSMUST00000226269 Gm49100 unprocessed_pseudogene Interval_22589 chr11 11974603 11975139 + 0 NA intron (ENSMUSG00000020176.17, intron 2 of 3) protein_coding-intron (ENSMUSG00000020176.17, intron 2 of 16) 51453 ENSMUSG00000020176.17 ENSMUSG00000020176 ENSMUST00000143915 Grb10 protein_coding Interval_53947 chr14 63637042 63638667 + 0 NA intron (ENSMUSG00000035067.9, intron 1 of 2) protein_coding-intron (ENSMUSG00000035067.9, intron 1 of 2) -30482 ENSMUSG00000087652.1 ENSMUSG00000087652 ENSMUST00000137259 Gm15918 antisense Interval_4877 chr1 81209107 81209280 + 0 NA intron (ENSMUSG00000054976.14, intron 4 of 6) protein_coding-intron (ENSMUSG00000054976.14, intron 3 of 4) 132243 ENSMUSG00000054976.14 ENSMUSG00000054976 ENSMUST00000123285 Nyap2 protein_coding Interval_150115 chr7 106823797 106824124 + 0 NA TTS (ENSMUSG00000056863.5) protein_coding-TTS (ENSMUSG00000056863.5) 9359 ENSMUSG00000036744.13 ENSMUSG00000036744 ENSMUST00000217739 Olfr701 protein_coding Interval_20969 chr10 122877970 122878203 + 0 NA intron (ENSMUSG00000034613.12, intron 5 of 5) protein_coding-intron (ENSMUSG00000034613.12, intron 5 of 9) -17282 ENSMUSG00000034613.12 ENSMUSG00000034613 ENSMUST00000162969 Ppm1h protein_coding Interval_67318 chr16 46009819 46011060 + 0 NA promoter-TSS (ENSMUSG00000087141.1) protein_coding-promoter-TSS (ENSMUSG00000087141.1) -221 ENSMUSG00000087141.1 ENSMUSG00000087141 ENSMUST00000130481 Plcxd2 protein_coding Interval_129039 chr5 117045212 117045950 + 0 NA Intergenic Intergenic -13231 ENSMUSG00000107327.1 ENSMUSG00000107327 ENSMUST00000201054 Gm7478 processed_pseudogene Interval_100992 chr2 173998587 173999325 + 0 NA Intergenic Intergenic -14265 ENSMUSG00000081700.1 ENSMUSG00000081700 ENSMUST00000120437 Atp5k-ps2 processed_pseudogene Interval_10246 chr1 167532222 167533293 + 0 NA Intergenic Intergenic -65703 ENSMUSG00000015843.10 ENSMUSG00000015843 ENSMUST00000111380 Rxrg protein_coding Interval_153754 chr8 6864316 6864488 + 0 NA Intergenic Intergenic -33424 ENSMUSG00000109457.1 ENSMUSG00000109457 ENSMUST00000208756 Gm44909 processed_pseudogene Interval_135478 chr6 39539718 39540354 + 0 NA intron (ENSMUSG00000085058.2, intron 3 of 3) protein_coding-intron (ENSMUSG00000038456.9, intron 1 of 18) 12510 ENSMUSG00000085058.2 ENSMUSG00000085058 ENSMUST00000200951 8030453O22Rik processed_transcript Interval_134787 chr6 31541262 31541549 + 0 NA intron (ENSMUSG00000025608.9, intron 1 of 7) protein_coding-intron (ENSMUSG00000025608.9, intron 1 of 7) -17094 ENSMUSG00000025608.9 ENSMUSG00000025608 ENSMUST00000136877 Podxl protein_coding Interval_7912 chr1 134546877 134547356 + 0 NA promoter-TSS (ENSMUSG00000046367.10) protein_coding-promoter-TSS (ENSMUSG00000046367.10) -166 ENSMUSG00000046367.10 ENSMUSG00000046367 ENSMUST00000185836 Mgat4e protein_coding Interval_3051 chr1 52691212 52691488 + 0 NA intron (ENSMUSG00000041439.15, intron 2 of 6) protein_coding-intron (ENSMUSG00000041439.15, intron 2 of 5) 13412 ENSMUSG00000100302.1 ENSMUSG00000100302 ENSMUST00000190228 Gm29670 sense_intronic Interval_87406 chr19 49069830 49070708 + 0 NA Intergenic Intergenic -20404 ENSMUSG00000118111.1 ENSMUSG00000118111 ENSMUST00000236912 Gm50442 lincRNA Interval_111053 chr4 11520105 11520445 + 0 NA intron (ENSMUSG00000040720.15, intron 10 of 24) protein_coding-intron (ENSMUSG00000040720.15, intron 9 of 12) -17436 ENSMUSG00000086625.1 ENSMUSG00000086625 ENSMUST00000141538 Gm11831 antisense Interval_122990 chr5 28209316 28212172 + 0 NA promoter-TSS (ENSMUSG00000044681.19) protein_coding-promoter-TSS (ENSMUSG00000044681.19) 35062 ENSMUSG00000044681.19 ENSMUSG00000044681 ENSMUST00000141196 Cnpy1 protein_coding Interval_75148 chr17 64025881 64026846 + 0 NA intron (ENSMUSG00000000127.15, intron 11 of 17) protein_coding-intron (ENSMUSG00000000127.15, intron 11 of 17) -162572 ENSMUSG00000045506.3 ENSMUSG00000045506 ENSMUST00000050753 A930002H24Rik protein_coding Interval_27985 chr11 71951496 71951951 + 0 NA Intergenic Intergenic -11601 ENSMUSG00000085528.1 ENSMUSG00000085528 ENSMUST00000128489 4930401O10Rik lincRNA Interval_141843 chr6 134869842 134870610 + 0 NA TTS (ENSMUSG00000032641.18) protein_coding-TTS (ENSMUSG00000032641.18) 17559 ENSMUSG00000032641.18 ENSMUSG00000032641 ENSMUST00000152140 Gpr19 protein_coding Interval_141824 chr6 134732886 134733127 + 0 NA intron (ENSMUSG00000030203.17, intron 2 of 4) protein_coding-intron (ENSMUSG00000030203.17, intron 4 of 6) -21240 ENSMUSG00000108196.1 ENSMUSG00000108196 ENSMUST00000204237 Gm36328 antisense Interval_35258 chr12 19102229 19102865 + 0 NA Intergenic Intergenic 6227 ENSMUSG00000113992.1 ENSMUSG00000113992 ENSMUST00000222116 Gm9158 unprocessed_pseudogene Interval_137336 chr6 71439824 71441391 + 0 NA promoter-TSS (ENSMUSG00000002222.14) protein_coding-promoter-TSS (ENSMUSG00000002222.14) -5500 ENSMUSG00000108211.1 ENSMUSG00000108211 ENSMUST00000205157 Gm44130 TEC Interval_37640 chr12 70729701 70730653 + 0 NA intron (ENSMUSG00000113900.1, intron 2 of 2) lincRNA-intron (ENSMUSG00000113900.1, intron 2 of 2) -48327 ENSMUSG00000112950.1 ENSMUSG00000112950 ENSMUST00000222630 Gm32369 lincRNA Interval_125254 chr5 65682196 65682636 + 0 NA promoter-TSS (ENSMUSG00000107050.1) TEC-promoter-TSS (ENSMUSG00000107050.1) -72 ENSMUSG00000107050.1 ENSMUSG00000107050 ENSMUST00000202959 C030017G13Rik TEC Interval_165945 chr9 54855582 54857816 + 0 NA Intergenic Intergenic -31417 ENSMUSG00000111686.1 ENSMUSG00000111686 ENSMUST00000213253 Rab7-ps1 processed_pseudogene Interval_148614 chr7 83319580 83319854 + 0 NA Intergenic Intergenic 49712 ENSMUSG00000109506.1 ENSMUSG00000109506 ENSMUST00000208430 Gm44724 lincRNA Interval_161471 chr8 120602348 120603079 + 0 NA intron (ENSMUSG00000092329.1, intron 1 of 15) protein_coding-intron (ENSMUSG00000092329.1, intron 1 of 15) 4161 ENSMUSG00000097702.1 ENSMUSG00000097702 ENSMUST00000181041 Gm26739 lincRNA Interval_29298 chr11 82763709 82764916 + 0 NA promoter-TSS (ENSMUSG00000020698.11) protein_coding-promoter-TSS (ENSMUSG00000020698.11) 9 ENSMUSG00000020698.11 ENSMUSG00000020698 ENSMUST00000100722 Cct6b protein_coding Interval_8072 chr1 135561030 135561603 + 0 NA intron (ENSMUSG00000009418.16, intron 4 of 30) protein_coding-intron (ENSMUSG00000009418.16, intron 1 of 29) -23457 ENSMUSG00000054412.5 ENSMUSG00000054412 ENSMUST00000067468 Gm4793 antisense Interval_164401 chr9 36759507 36759693 + 0 NA exon (ENSMUSG00000032116.18, exon 1 of 2) protein_coding-exon (ENSMUSG00000032116.18, exon 1 of 2) 8009 ENSMUSG00000032116.18 ENSMUSG00000032116 ENSMUST00000137994 Stt3a protein_coding Interval_142534 chr6 143129123 143130235 + 0 NA intron (ENSMUSG00000108094.1, intron 7 of 8) lincRNA-intron (ENSMUSG00000108094.1, intron 7 of 8) -4621 ENSMUSG00000107693.1 ENSMUSG00000107693 ENSMUST00000203536 Gm44312 processed_pseudogene Interval_37663 chr12 70937276 70938489 + 0 NA promoter-TSS (ENSMUSG00000021076.6) protein_coding-promoter-TSS (ENSMUSG00000021076.6) -2060 ENSMUSG00000021076.6 ENSMUSG00000021076 ENSMUST00000220452 Actr10 protein_coding Interval_118601 chr4 132715558 132715861 + 0 NA intron (ENSMUSG00000028886.15, intron 14 of 15) protein_coding-intron (ENSMUSG00000028886.15, intron 13 of 14) 16819 ENSMUSG00000037752.4 ENSMUSG00000037752 ENSMUST00000143642 Xkr8 protein_coding Interval_93946 chr2 79795355 79795693 + 0 NA intron (ENSMUSG00000034683.12, intron 1 of 1) protein_coding-intron (ENSMUSG00000034683.12, intron 2 of 2) 8933 ENSMUSG00000034683.12 ENSMUSG00000034683 ENSMUST00000144432 Ppp1r1c protein_coding Interval_46198 chr13 62441314 62442337 + 0 NA Intergenic Intergenic -7435 ENSMUSG00000113812.1 ENSMUSG00000113812 ENSMUST00000220732 Gm48699 TEC Interval_64371 chr16 10902126 10903054 + 0 NA intron (ENSMUSG00000117309.1, intron 17 of 45) transcribed_unitary_pseudogene-intron (ENSMUSG00000117309.1, intron 17 of 45) 34716 ENSMUSG00000095369.2 ENSMUSG00000095369 ENSMUST00000233047 Gm21859 processed_transcript Interval_111410 chr4 21251026 21251604 + 0 NA Intergenic Intergenic -18760 ENSMUSG00000088073.1 ENSMUSG00000088073 ENSMUST00000157448 Gm22817 ribozyme Interval_159463 chr8 94874188 94874687 + 0 NA TTS (ENSMUSG00000031783.10) protein_coding-TTS (ENSMUSG00000031783.10) -3233 ENSMUSG00000040631.8 ENSMUSG00000040631 ENSMUST00000212745 Dok4 protein_coding Interval_34397 chr12 3852590 3853243 + 0 NA intron (ENSMUSG00000020661.15, intron 3 of 22) protein_coding-intron (ENSMUSG00000020661.15, intron 3 of 22) 9328 ENSMUSG00000073242.4 ENSMUSG00000073242 ENSMUST00000144896 Dnmt3aos antisense Interval_8324 chr1 137333642 137334542 + 0 NA Intergenic Intergenic -8250 ENSMUSG00000102738.1 ENSMUSG00000102738 ENSMUST00000191810 1700006P03Rik TEC Interval_36419 chr12 44268567 44269796 + 0 NA promoter-TSS (ENSMUSG00000036257.15) protein_coding-promoter-TSS (ENSMUSG00000036257.15) 14 ENSMUSG00000036257.15 ENSMUSG00000036257 ENSMUST00000156082 Pnpla8 protein_coding Interval_72336 chr17 29274124 29274430 + 0 NA promoter-TSS (ENSMUSG00000052712.17) protein_coding-promoter-TSS (ENSMUSG00000052712.17) 123 ENSMUSG00000052712.17 ENSMUSG00000052712 ENSMUST00000150874 BC004004 protein_coding Interval_158592 chr8 84663842 84665747 + 0 NA promoter-TSS (ENSMUSG00000118487.1) unitary_pseudogene-promoter-TSS (ENSMUSG00000118487.1) -651 ENSMUSG00000118487.1 ENSMUSG00000118487 ENSMUST00000238703 Gm50464 unitary_pseudogene Interval_164414 chr9 36850307 36850841 + 0 NA TTS (ENSMUSG00000032118.16) protein_coding-TTS (ENSMUSG00000032118.16) 17766 ENSMUSG00000032118.16 ENSMUSG00000032118 ENSMUST00000161978 Fez1 protein_coding Interval_118712 chr4 133321871 133322132 + 0 NA intron (ENSMUSG00000037622.14, intron 1 of 2) protein_coding-intron (ENSMUSG00000037622.14, intron 3 of 15) 229 ENSMUSG00000037622.14 ENSMUSG00000037622 ENSMUST00000140976 Wdtc1 protein_coding Interval_98335 chr2 151572009 151572652 + 0 NA promoter-TSS (ENSMUSG00000027456.8) protein_coding-promoter-TSS (ENSMUSG00000027456.8) -292 ENSMUSG00000027456.8 ENSMUSG00000027456 ENSMUST00000028950 Sdcbp2 protein_coding Interval_146114 chr7 44028051 44028335 + 0 NA promoter-TSS (ENSMUSG00000108339.1) unprocessed_pseudogene-promoter-TSS (ENSMUSG00000108339.1) -661 ENSMUSG00000108339.1 ENSMUSG00000108339 ENSMUST00000206374 Klk1b28-ps unprocessed_pseudogene Interval_24161 chr11 30806526 30807244 + 0 NA intron (ENSMUSG00000040850.17, intron 7 of 46) protein_coding-intron (ENSMUSG00000040850.17, intron 7 of 46) 15785 ENSMUSG00000086986.3 ENSMUSG00000086986 ENSMUST00000121892 Gm12103 processed_pseudogene Interval_66783 chr16 37593204 37593514 + 0 NA exon (ENSMUSG00000022821.13, exon 3 of 13) protein_coding-exon (ENSMUSG00000022821.13, exon 3 of 13) 2831 ENSMUSG00000116723.1 ENSMUSG00000116723 ENSMUST00000231668 Gm46559 antisense Interval_117496 chr4 124171891 124172112 + 0 NA Intergenic Intergenic 107176 ENSMUSG00000103541.1 ENSMUSG00000103541 ENSMUST00000193103 Gm37667 TEC Interval_107495 chr3 108104853 108105504 + 0 NA Intergenic Intergenic 12040 ENSMUSG00000009108.15 ENSMUSG00000009108 ENSMUST00000130013 Gnat2 protein_coding Interval_125154 chr5 64959824 64960079 + 0 NA promoter-TSS (ENSMUSG00000051498.7) protein_coding-promoter-TSS (ENSMUSG00000051498.7) 97 ENSMUSG00000051498.7 ENSMUSG00000051498 ENSMUST00000201307 Tlr6 protein_coding Interval_107123 chr3 103728619 103728890 + 0 NA intron (ENSMUSG00000027848.12, intron 2 of 2) protein_coding-intron (ENSMUSG00000027848.12, intron 2 of 2) 3799 ENSMUSG00000027848.12 ENSMUSG00000027848 ENSMUST00000154145 Olfml3 protein_coding Interval_86927 chr19 44930355 44931785 + 0 NA promoter-TSS (ENSMUSG00000036097.8) protein_coding-promoter-TSS (ENSMUSG00000036097.8) -11782 ENSMUSG00000036097.8 ENSMUSG00000036097 ENSMUST00000237505 Slf2 protein_coding Interval_44628 chr13 46802228 46802852 + 0 NA TTS (ENSMUSG00000021375.11) protein_coding-TTS (ENSMUSG00000021375.11) 6517 ENSMUSG00000021375.11 ENSMUSG00000021375 ENSMUST00000224923 Kif13a protein_coding Interval_5381 chr1 88191986 88192397 + 0 NA exon (ENSMUSG00000083277.1, exon 1 of 1) unprocessed_pseudogene-exon (ENSMUSG00000083277.1, exon 1 of 1) 290 ENSMUSG00000083277.1 ENSMUSG00000083277 ENSMUST00000122258 Gm15376 unprocessed_pseudogene Interval_3275 chr1 55405361 55407032 + 0 NA exon (ENSMUSG00000038349.10, exon 1 of 6) protein_coding-exon (ENSMUSG00000038349.10, exon 1 of 6) -24109 ENSMUSG00000101085.1 ENSMUSG00000101085 ENSMUST00000188319 Gm8531 processed_pseudogene Interval_75671 chr17 70488899 70489664 + 0 NA intron (ENSMUSG00000003279.17, intron 1 of 11) protein_coding-intron (ENSMUSG00000003279.17, intron 5 of 14) 266301 ENSMUSG00000097282.1 ENSMUSG00000097282 ENSMUST00000181546 5031415H12Rik antisense Interval_26867 chr11 61190633 61191192 + 0 NA Intergenic Intergenic 15263 ENSMUSG00000082626.1 ENSMUSG00000082626 ENSMUST00000117939 Rps13-ps5 processed_pseudogene Interval_11654 chr1 184019022 184020489 + 0 NA intron (ENSMUSG00000039384.8, intron 2 of 2) protein_coding-intron (ENSMUSG00000039384.8, intron 2 of 2) 6453 ENSMUSG00000039384.8 ENSMUSG00000039384 ENSMUST00000048655 Dusp10 protein_coding Interval_151816 chr7 126831881 126832694 + 0 NA promoter-TSS (ENSMUSG00000045989.4) protein_coding-promoter-TSS (ENSMUSG00000045989.4) -648 ENSMUSG00000045989.4 ENSMUSG00000045989 ENSMUST00000205320 4930451I11Rik protein_coding Interval_62866 chr15 97532680 97532876 + 0 NA Intergenic Intergenic 25512 ENSMUSG00000116131.1 ENSMUSG00000116131 ENSMUST00000230522 Gm49506 processed_pseudogene Interval_52008 chr14 34590414 34591895 + 0 NA promoter-TSS (ENSMUSG00000115509.1) antisense-promoter-TSS (ENSMUSG00000115509.1) 62 ENSMUSG00000115509.1 ENSMUSG00000115509 ENSMUST00000226451 Gm49012 antisense Interval_132503 chr5 145606952 145607329 + 0 NA Intergenic Intergenic -11180 ENSMUSG00000106033.1 ENSMUSG00000106033 ENSMUST00000198553 Gm43381 processed_pseudogene Interval_14004 chr10 25409159 25409500 + 0 NA intron (ENSMUSG00000019978.16, intron 1 of 10) protein_coding-intron (ENSMUSG00000019978.16, intron 1 of 19) 6856 ENSMUSG00000112445.1 ENSMUSG00000112445 ENSMUST00000219193 Gm47830 processed_pseudogene Interval_122471 chr5 23249931 23252336 + 0 NA intron (ENSMUSG00000106379.1, intron 3 of 3) protein_coding-intron (ENSMUSG00000106379.1, intron 2 of 2) -27337 ENSMUSG00000104866.1 ENSMUSG00000104866 ENSMUST00000199085 Gm42948 antisense Interval_34781 chr12 11129293 11131295 + 0 NA intron (ENSMUSG00000043673.11, intron 1 of 2) protein_coding-intron (ENSMUSG00000043673.11, intron 1 of 2) 20762 ENSMUSG00000043673.11 ENSMUSG00000043673 ENSMUST00000164495 Kcns3 protein_coding Interval_59261 chr15 50261441 50261732 + 0 NA Intergenic Intergenic -25312 ENSMUSG00000115478.1 ENSMUSG00000115478 ENSMUST00000227182 Gm49198 lincRNA Interval_13046 chr10 10062360 10062708 + 0 NA intron (ENSMUSG00000101621.2, intron 1 of 1) lincRNA-intron (ENSMUSG00000101621.2, intron 1 of 1) -21409 ENSMUSG00000112074.1 ENSMUSG00000112074 ENSMUST00000219020 Gm48278 lincRNA Interval_95919 chr2 118398227 118399476 + 0 NA intron (ENSMUSG00000005102.13, intron 1 of 37) protein_coding-intron (ENSMUSG00000005102.13, intron 1 of 38) -25432 ENSMUSG00000040133.2 ENSMUSG00000040133 ENSMUST00000039160 Gpr176 protein_coding Interval_21738 chr11 4035278 4036121 + 0 NA intron (ENSMUSG00000019368.13, intron 2 of 8) protein_coding-intron (ENSMUSG00000019368.13, intron 2 of 11) 4234 ENSMUSG00000019368.13 ENSMUSG00000019368 ENSMUST00000134482 Sec14l4 protein_coding Interval_167008 chr9 64474641 64475488 + 0 NA intron (ENSMUSG00000036466.17, intron 1 of 24) protein_coding-intron (ENSMUSG00000036466.17, intron 1 of 24) 89438 ENSMUSG00000036466.17 ENSMUSG00000036466 ENSMUST00000153934 Megf11 protein_coding Interval_35152 chr12 17630894 17631613 + 0 NA Intergenic Intergenic 13952 ENSMUSG00000088939.1 ENSMUSG00000088939 ENSMUST00000158314 Gm25925 misc_RNA Interval_54 GL456212.1 91773 92215 + 0 NA NA NA NA NA Interval_165246 chr9 45754589 45755479 + 0 NA Intergenic Intergenic 39232 ENSMUSG00000043987.18 ENSMUSG00000043987 ENSMUST00000214868 Cep164 protein_coding Interval_62509 chr15 93595100 93596640 + 0 NA promoter-TSS (ENSMUSG00000036158.12) protein_coding-promoter-TSS (ENSMUSG00000036158.12) -76347 ENSMUSG00000036158.12 ENSMUSG00000036158 ENSMUST00000048982 Prickle1 protein_coding Interval_140102 chr6 114224432 114225076 + 0 NA intron (ENSMUSG00000030307.8, intron 6 of 13) protein_coding-intron (ENSMUSG00000030307.8, intron 6 of 13) -55231 ENSMUSG00000108186.1 ENSMUSG00000108186 ENSMUST00000204938 Gm8132 processed_pseudogene Interval_85714 chr19 29988706 29989474 + 0 NA Intergenic Intergenic 2991 ENSMUSG00000087937.1 ENSMUSG00000087937 ENSMUST00000157312 Gm26046 snRNA Interval_68217 chr16 68898323 68899158 + 0 NA Intergenic Intergenic -3156 ENSMUSG00000088288.1 ENSMUSG00000088288 ENSMUST00000157663 Gm23591 misc_RNA Interval_28677 chr11 77712988 77713823 + 0 NA TTS (ENSMUSG00000037857.16) protein_coding-TTS (ENSMUSG00000037857.16) 8429 ENSMUSG00000000724.10 ENSMUSG00000000724 ENSMUST00000078623 Cryba1 protein_coding Interval_6341 chr1 106071038 106072520 + 0 NA TTS (ENSMUSG00000102501.1) TEC-TTS (ENSMUSG00000102501.1) 4115 ENSMUSG00000102501.1 ENSMUSG00000102501 ENSMUST00000193577 Gm37372 TEC Interval_60735 chr15 76436909 76437206 + 0 NA intron (ENSMUSG00000022558.16, intron 13 of 24) protein_coding-intron (ENSMUSG00000022558.16, intron 29 of 30) 3843 ENSMUSG00000099260.1 ENSMUSG00000099260 ENSMUST00000183412 Mir6954 miRNA Interval_32149 chr11 105643625 105644215 + 0 NA intron (ENSMUSG00000053580.16, intron 2 of 4) protein_coding-intron (ENSMUSG00000053580.16, intron 2 of 25) -29502 ENSMUSG00000053580.16 ENSMUSG00000053580 ENSMUST00000147975 Tanc2 protein_coding Interval_65907 chr16 30158821 30159586 + 0 NA Intergenic Intergenic -17258 ENSMUSG00000084444.1 ENSMUSG00000084444 ENSMUST00000122495 n-R5s32 rRNA Interval_72478 chr17 30058034 30059087 + 0 NA intron (ENSMUSG00000044477.12, intron 1 of 4) protein_coding-intron (ENSMUSG00000044477.12, intron 1 of 4) -53869 ENSMUSG00000117371.1 ENSMUSG00000117371 ENSMUST00000233996 Gm50019 bidirectional_promoter_lncRNA Interval_37457 chr12 69120014 69120498 + 0 NA promoter-TSS (ENSMUSG00000113716.1) lincRNA-promoter-TSS (ENSMUSG00000113716.1) 91 ENSMUSG00000113716.1 ENSMUSG00000113716 ENSMUST00000222118 Gm47518 lincRNA Interval_39033 chr12 84578248 84578524 + 0 NA intron (ENSMUSG00000021239.12, intron 3 of 4) protein_coding-intron (ENSMUSG00000021239.12, intron 3 of 4) 8546 ENSMUSG00000021239.12 ENSMUSG00000021239 ENSMUST00000169934 Vsx2 protein_coding Interval_36224 chr12 39936307 39936675 + 0 NA Intergenic Intergenic -13632 ENSMUSG00000113874.1 ENSMUSG00000113874 ENSMUST00000220869 Gm47868 lincRNA Interval_12390 chr1 192861865 192862143 + 0 NA Intergenic Intergenic -6248 ENSMUSG00000016262.14 ENSMUSG00000016262 ENSMUST00000125391 Sertad4 protein_coding Interval_109853 chr3 148966412 148966683 + 0 NA intron (ENSMUSG00000028184.12, intron 1 of 19) protein_coding-intron (ENSMUSG00000028184.12, intron 1 of 2) -22605 ENSMUSG00000104786.1 ENSMUSG00000104786 ENSMUST00000196445 Gm43573 antisense Interval_159260 chr8 92419442 92419827 + 0 NA Intergenic Intergenic -46133 ENSMUSG00000110290.1 ENSMUSG00000110290 ENSMUST00000210010 Gm45336 lincRNA Interval_119798 chr4 140052602 140053138 + 0 NA intron (ENSMUSG00000040972.8, intron 4 of 9) protein_coding-intron (ENSMUSG00000040972.8, intron 4 of 9) -79007 ENSMUSG00000085968.1 ENSMUSG00000085968 ENSMUST00000135858 Gm13027 antisense Interval_140043 chr6 113611006 113611276 + 0 NA exon (ENSMUSG00000107560.1, exon 2 of 3) antisense-exon (ENSMUSG00000107560.1, exon 2 of 3) 1304 ENSMUSG00000107560.1 ENSMUSG00000107560 ENSMUST00000205219 Gm44199 antisense Interval_19784 chr10 108792395 108792598 + 0 NA intron (ENSMUSG00000035864.14, intron 3 of 7) protein_coding-intron (ENSMUSG00000035864.14, intron 3 of 10) 14185 ENSMUSG00000111910.1 ENSMUSG00000111910 ENSMUST00000219164 Gm47472 TEC Interval_160846 chr8 113672279 113672569 + 0 NA intron (ENSMUSG00000110582.1, intron 2 of 2) lincRNA-intron (ENSMUSG00000110582.1, intron 2 of 2) 4034 ENSMUSG00000110582.1 ENSMUSG00000110582 ENSMUST00000211951 Gm30052 lincRNA Interval_75711 chr17 70808622 70809032 + 0 NA promoter-TSS (ENSMUSG00000003279.17) protein_coding-promoter-TSS (ENSMUSG00000003279.17) -245 ENSMUSG00000003279.17 ENSMUSG00000003279 ENSMUST00000233780 Dlgap1 protein_coding Interval_164775 chr9 41611276 41611592 + 0 NA intron (ENSMUSG00000074415.14, intron 1 of 1) processed_transcript-intron (ENSMUSG00000074415.14, intron 1 of 1) -7558 ENSMUSG00000111107.1 ENSMUSG00000111107 ENSMUST00000216975 Gm48737 TEC Interval_161380 chr8 120090413 120090768 + 0 NA intron (ENSMUSG00000031823.14, intron 2 of 7) protein_coding-intron (ENSMUSG00000031823.14, intron 2 of 7) -3755 ENSMUSG00000031823.14 ENSMUSG00000031823 ENSMUST00000123186 Zdhhc7 protein_coding Interval_75215 chr17 64770237 64770493 + 0 NA Intergenic Intergenic 3254 ENSMUSG00000117105.1 ENSMUSG00000117105 ENSMUST00000233348 Dreh lincRNA Interval_50895 chr14 20602372 20602571 + 0 NA intron (ENSMUSG00000034235.17, intron 2 of 8) protein_coding-intron (ENSMUSG00000034235.17, intron 3 of 20) 2859 ENSMUSG00000034235.17 ENSMUSG00000034235 ENSMUST00000127342 Usp54 protein_coding Interval_119939 chr4 141029235 141029456 + 0 NA promoter-TSS (ENSMUSG00000040860.16) protein_coding-promoter-TSS (ENSMUSG00000040860.16) 18927 ENSMUSG00000060572.17 ENSMUSG00000060572 ENSMUST00000071977 Mfap2 protein_coding Interval_11823 chr1 185866738 185867106 + 0 NA Intergenic Intergenic 11963 ENSMUSG00000102546.1 ENSMUSG00000102546 ENSMUST00000194568 Gm9722 processed_pseudogene Interval_156073 chr8 43509232 43509627 + 0 NA Intergenic Intergenic 18677 ENSMUSG00000063900.5 ENSMUSG00000063900 ENSMUST00000080135 Adam26b protein_coding Interval_3326 chr1 56952988 56954410 + 0 NA intron (ENSMUSG00000038331.15, intron 1 of 6) protein_coding-intron (ENSMUSG00000038331.15, intron 2 of 9) 16173 ENSMUSG00000038331.15 ENSMUSG00000038331 ENSMUST00000177282 Satb2 protein_coding Interval_37243 chr12 62702110 62702580 + 0 NA TTS (ENSMUSG00000114078.1) processed_pseudogene-TTS (ENSMUSG00000114078.1) 1931 ENSMUSG00000114078.1 ENSMUSG00000114078 ENSMUST00000220692 Tspyl-ps processed_pseudogene Interval_34751 chr12 9478143 9478548 + 0 NA Intergenic Intergenic -4971 ENSMUSG00000111989.1 ENSMUSG00000111989 ENSMUST00000220103 Gm18696 processed_pseudogene Interval_95825 chr2 116969392 116969595 + 0 NA Intergenic Intergenic -1320 ENSMUSG00000065794.1 ENSMUSG00000065794 ENSMUST00000083860 Gm25514 snRNA Interval_66383 chr16 33504356 33505275 + 0 NA TTS (ENSMUSG00000022811.17) protein_coding-TTS (ENSMUSG00000022811.17) -111575 ENSMUSG00000035506.16 ENSMUSG00000035506 ENSMUST00000149291 Slc12a8 protein_coding Interval_129033 chr5 116960530 116961855 + 0 NA Intergenic Intergenic -97620 ENSMUSG00000107327.1 ENSMUSG00000107327 ENSMUST00000201054 Gm7478 processed_pseudogene Interval_166385 chr9 58822098 58824358 + 0 NA promoter-TSS (ENSMUSG00000032338.9) protein_coding-promoter-TSS (ENSMUSG00000032338.9) -184 ENSMUSG00000032338.9 ENSMUSG00000032338 ENSMUST00000034889 Hcn4 protein_coding Interval_98290 chr2 150832770 150832999 + 0 NA TTS (ENSMUSG00000032046.15) protein_coding-TTS (ENSMUSG00000032046.15) 9686 ENSMUSG00000032046.15 ENSMUSG00000032046 ENSMUST00000129228 Abhd12 protein_coding Interval_148110 chr7 79287770 79288517 + 0 NA intron (ENSMUSG00000039202.12, intron 1 of 5) protein_coding-intron (ENSMUSG00000039202.12, intron 1 of 10) 10376 ENSMUSG00000108521.1 ENSMUSG00000108521 ENSMUST00000205859 Gm44639 TEC Interval_9935 chr1 164224392 164225077 + 0 NA Intergenic Intergenic -24519 ENSMUSG00000040918.12 ENSMUSG00000040918 ENSMUST00000160773 Slc19a2 protein_coding Interval_137762 chr6 82191082 82191466 + 0 NA Intergenic Intergenic -50900 ENSMUSG00000108224.1 ENSMUSG00000108224 ENSMUST00000204563 Gm31861 processed_pseudogene Interval_81421 chr18 60656174 60656486 + 0 NA intron (ENSMUSG00000043079.17, intron 1 of 3) protein_coding-intron (ENSMUSG00000043079.17, intron 1 of 3) -32068 ENSMUSG00000043079.17 ENSMUSG00000043079 ENSMUST00000139236 Synpo protein_coding Interval_125472 chr5 67418084 67419482 + 0 NA intron (ENSMUSG00000092060.4, intron 1 of 4) protein_coding-intron (ENSMUSG00000092060.4, intron 1 of 4) 8834 ENSMUSG00000092060.4 ENSMUSG00000092060 ENSMUST00000201972 Bend4 protein_coding Interval_145682 chr7 37357593 37358729 + 0 NA intron (ENSMUSG00000043456.17, intron 3 of 3) protein_coding-intron (ENSMUSG00000043456.17, intron 3 of 3) 8469 ENSMUSG00000108507.1 ENSMUSG00000108507 ENSMUST00000206785 6720469O03Rik TEC Interval_142874 chr6 146613870 146614735 + 0 NA intron (ENSMUSG00000040234.16, intron 4 of 5) protein_coding-intron (ENSMUSG00000040234.16, intron 6 of 11) -28289 ENSMUSG00000030291.12 ENSMUSG00000030291 ENSMUST00000075077 Med21 protein_coding Interval_130410 chr5 127416932 127417232 + 0 NA intron (ENSMUSG00000034324.16, intron 2 of 8) protein_coding-intron (ENSMUSG00000034324.16, intron 2 of 8) 108065 ENSMUSG00000104971.1 ENSMUSG00000104971 ENSMUST00000196548 9430087B13Rik TEC Interval_55437 chr14 87264454 87264902 + 0 NA Intergenic Intergenic -64604 ENSMUSG00000102284.1 ENSMUSG00000102284 ENSMUST00000194560 Gm37002 TEC Interval_39440 chr12 87416552 87416997 + 0 NA Intergenic Intergenic -3737 ENSMUSG00000114103.1 ENSMUSG00000114103 ENSMUST00000220777 Gm8557 processed_pseudogene Interval_103815 chr3 53240050 53240536 + 0 NA intron (ENSMUSG00000048332.13, intron 3 of 3) protein_coding-intron (ENSMUSG00000048332.13, intron 3 of 3) 10968 ENSMUSG00000048332.13 ENSMUSG00000048332 ENSMUST00000196913 Lhfp protein_coding Interval_32178 chr11 105952044 105953542 + 0 NA intron (ENSMUSG00000019590.16, intron 1 of 4) protein_coding-intron (ENSMUSG00000019590.16, intron 1 of 4) -8364 ENSMUSG00000019590.16 ENSMUSG00000019590 ENSMUST00000150563 Cyb561 protein_coding Interval_94342 chr2 89957663 89958489 + 0 NA Intergenic Intergenic -9412 ENSMUSG00000068806.5 ENSMUSG00000068806 ENSMUST00000090695 Olfr1259 protein_coding Interval_167960 chr9 74982499 74983393 + 0 NA intron (ENSMUSG00000034858.16, intron 1 of 11) protein_coding-intron (ENSMUSG00000034858.16, intron 1 of 11) 30062 ENSMUSG00000034858.16 ENSMUSG00000034858 ENSMUST00000081746 Fam214a protein_coding Interval_38136 chr12 75871861 75872217 + 0 NA intron (ENSMUSG00000063450.14, intron 2 of 12) protein_coding-intron (ENSMUSG00000063450.14, intron 2 of 115) -37064 ENSMUSG00000092922.1 ENSMUSG00000092922 ENSMUST00000175181 Mir5101 miRNA Interval_116874 chr4 117886742 117887842 + 0 NA promoter-TSS (ENSMUSG00000033379.13) protein_coding-promoter-TSS (ENSMUSG00000033379.13) -1492 ENSMUSG00000033379.13 ENSMUSG00000033379 ENSMUST00000147845 Atp6v0b protein_coding Interval_85767 chr19 30605204 30605824 + 0 NA intron (ENSMUSG00000052920.16, intron 4 of 10) protein_coding-intron (ENSMUSG00000052920.16, intron 10 of 17) -55849 ENSMUSG00000024868.8 ENSMUSG00000024868 ENSMUST00000025803 Dkk1 protein_coding Interval_83570 chr18 89888610 89888794 + 0 NA Intergenic Intergenic 55610 ENSMUSG00000098126.1 ENSMUSG00000098126 ENSMUST00000182270 Gm27037 processed_pseudogene Interval_55077 chr14 77770783 77771273 + 0 NA Intergenic Intergenic -9946 ENSMUSG00000115257.1 ENSMUSG00000115257 ENSMUST00000227970 Gm30467 lincRNA Interval_44211 chr13 42159197 42159578 + 0 NA TTS (ENSMUSG00000021366.8) protein_coding-TTS (ENSMUSG00000021366.8) -4935 ENSMUSG00000021366.8 ENSMUSG00000021366 ENSMUST00000220801 Hivep1 protein_coding Interval_44809 chr13 48807340 48807768 + 0 NA intron (ENSMUSG00000038025.8, intron 18 of 21) protein_coding-intron (ENSMUSG00000038025.8, intron 18 of 21) -43973 ENSMUSG00000113297.1 ENSMUSG00000113297 ENSMUST00000222192 Rpl17-ps6 processed_pseudogene Interval_66538 chr16 34972638 34973181 + 0 NA intron (ENSMUSG00000022836.11, intron 15 of 17) protein_coding-intron (ENSMUSG00000022836.11, intron 25 of 31) -14031 ENSMUSG00000116665.1 ENSMUSG00000116665 ENSMUST00000232399 E130310I04Rik antisense Interval_167985 chr9 75274688 75275685 + 0 NA intron (ENSMUSG00000033590.8, intron 20 of 29) protein_coding-intron (ENSMUSG00000033590.8, intron 19 of 40) 39685 ENSMUSG00000111348.1 ENSMUSG00000111348 ENSMUST00000216737 Gm19531 antisense Interval_59290 chr15 50816274 50818172 + 0 NA intron (ENSMUSG00000038679.16, intron 5 of 7) protein_coding-intron (ENSMUSG00000038679.16, intron 5 of 6) 71891 ENSMUSG00000084458.1 ENSMUSG00000084458 ENSMUST00000122509 Mir1907 miRNA Interval_35720 chr12 28627064 28629624 + 0 NA Intergenic Intergenic 4046 ENSMUSG00000061477.4 ENSMUSG00000061477 ENSMUST00000222228 Rps7 protein_coding Interval_84940 chr19 19246706 19247531 + 0 NA intron (ENSMUSG00000117909.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000117909.1, intron 1 of 2) -28781 ENSMUSG00000088907.1 ENSMUSG00000088907 ENSMUST00000158282 Gm25437 snoRNA Interval_59757 chr15 59065831 59066758 + 0 NA intron (ENSMUSG00000022353.10, intron 1 of 2) protein_coding-intron (ENSMUSG00000022353.10, intron 1 of 14) 15711 ENSMUSG00000022353.10 ENSMUSG00000022353 ENSMUST00000227797 Mtss1 protein_coding Interval_72819 chr17 32369016 32369628 + 0 NA TTS (ENSMUSG00000024050.18) protein_coding-TTS (ENSMUSG00000024050.18) 18366 ENSMUSG00000024050.18 ENSMUSG00000024050 ENSMUST00000170603 Wiz protein_coding Interval_108124 chr3 121700435 121700966 + 0 NA TTS (ENSMUSG00000106036.1) lincRNA-TTS (ENSMUSG00000106036.1) 9546 ENSMUSG00000106036.1 ENSMUSG00000106036 ENSMUST00000197703 Gm43608 lincRNA Interval_3895 chr1 64545007 64545703 + 0 NA intron (ENSMUSG00000025958.14, intron 1 of 6) protein_coding-intron (ENSMUSG00000025958.14, intron 1 of 8) -31033 ENSMUSG00000025958.14 ENSMUSG00000025958 ENSMUST00000190979 Creb1 protein_coding Interval_24989 chr11 42632097 42632286 + 0 NA Intergenic Intergenic 210841 ENSMUSG00000007653.12 ENSMUSG00000007653 ENSMUST00000192403 Gabrb2 protein_coding Interval_98201 chr2 149798319 149799194 + 0 NA promoter-TSS (ENSMUSG00000087029.1) lincRNA-promoter-TSS (ENSMUSG00000087029.1) -55 ENSMUSG00000087029.1 ENSMUSG00000087029 ENSMUST00000139471 Gm14133 lincRNA Interval_17829 chr10 80298940 80299521 + 0 NA exon (ENSMUSG00000020135.13, exon 1 of 4) protein_coding-exon (ENSMUSG00000020135.13, exon 1 of 4) 139 ENSMUSG00000020135.13 ENSMUSG00000020135 ENSMUST00000020349 Apc2 protein_coding Interval_99115 chr2 157293363 157293655 + 0 NA intron (ENSMUSG00000027642.15, intron 4 of 16) protein_coding-intron (ENSMUSG00000027642.15, intron 3 of 16) 11566 ENSMUSG00000027642.15 ENSMUSG00000027642 ENSMUST00000149924 Rpn2 protein_coding Interval_39952 chr12 100082492 100084485 + 0 NA intron (ENSMUSG00000113268.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000113268.1, intron 1 of 1) -2671 ENSMUSG00000112999.1 ENSMUSG00000112999 ENSMUST00000221663 9530050K03Rik processed_pseudogene Interval_6357 chr1 106243588 106243935 + 0 NA intron (ENSMUSG00000044340.7, intron 1 of 16) protein_coding-intron (ENSMUSG00000044340.7, intron 1 of 16) 24447 ENSMUSG00000103291.1 ENSMUSG00000103291 ENSMUST00000194600 Gm38235 TEC Interval_127161 chr5 100719211 100720539 + 0 NA promoter-TSS (ENSMUSG00000035273.14) protein_coding-promoter-TSS (ENSMUSG00000035273.14) -170 ENSMUSG00000035273.14 ENSMUSG00000035273 ENSMUST00000112908 Hpse protein_coding Interval_129677 chr5 121670245 121671156 + 0 NA intron (ENSMUSG00000029458.14, intron 1 of 8) protein_coding-intron (ENSMUSG00000029458.14, intron 4 of 11) -12228 ENSMUSG00000029458.14 ENSMUSG00000029458 ENSMUST00000196897 Brap protein_coding Interval_127630 chr5 105951992 105952410 + 0 NA Intergenic Intergenic 28981 ENSMUSG00000105129.1 ENSMUSG00000105129 ENSMUST00000199576 Gm19566 processed_pseudogene Interval_123424 chr5 32431223 32431806 + 0 NA Intergenic Intergenic 11511 ENSMUSG00000107211.1 ENSMUSG00000107211 ENSMUST00000202263 Gm5864 processed_pseudogene Interval_128560 chr5 114024674 114025280 + 0 NA exon (ENSMUSG00000042096.15, exon 10 of 10) protein_coding-exon (ENSMUSG00000042096.15, exon 10 of 10) 15086 ENSMUSG00000042096.15 ENSMUSG00000042096 ENSMUST00000162214 Dao protein_coding Interval_123913 chr5 36483572 36484936 + 0 NA promoter-TSS (ENSMUSG00000029196.9) protein_coding-promoter-TSS (ENSMUSG00000029196.9) -142 ENSMUSG00000029196.9 ENSMUSG00000029196 ENSMUST00000119916 Tada2b protein_coding Interval_165783 chr9 52920587 52920908 + 0 NA Intergenic Intergenic 156736 ENSMUSG00000110833.1 ENSMUSG00000110833 ENSMUST00000216112 Gm47981 processed_pseudogene Interval_24410 chr11 33068981 33069181 + 0 NA intron (ENSMUSG00000087318.1, intron 1 of 3) lincRNA-intron (ENSMUSG00000087318.1, intron 1 of 3) 530 ENSMUSG00000087318.1 ENSMUSG00000087318 ENSMUST00000147896 Gm12114 lincRNA Interval_46281 chr13 63347676 63348030 + 0 NA intron (ENSMUSG00000021461.17, intron 6 of 13) protein_coding-intron (ENSMUSG00000021461.17, intron 6 of 15) 18297 ENSMUSG00000089854.2 ENSMUSG00000089854 ENSMUST00000160065 Gm16133 antisense Interval_133971 chr6 17077734 17080070 + 0 NA intron (ENSMUSG00000054556.6, intron 2 of 2) protein_coding-intron (ENSMUSG00000029552.19, intron 1 of 8) 13742 ENSMUSG00000029552.19 ENSMUSG00000029552 ENSMUST00000076654 Tes protein_coding Interval_102940 chr3 32986519 32986841 + 0 NA intron (ENSMUSG00000027674.16, intron 8 of 14) protein_coding-intron (ENSMUSG00000027674.16, intron 8 of 14) 12004 ENSMUSG00000104283.1 ENSMUSG00000104283 ENSMUST00000195007 Gm37459 antisense Interval_117536 chr4 124484709 124486571 + 0 NA intron (ENSMUSG00000084757.7, intron 1 of 3) lincRNA-intron (ENSMUSG00000084757.7, intron 1 of 3) -34355 ENSMUSG00000084757.7 ENSMUSG00000084757 ENSMUST00000156566 1700057H15Rik lincRNA Interval_171947 chr9 122847700 122848397 + 0 NA TTS (ENSMUSG00000047036.8) protein_coding-TTS (ENSMUSG00000047036.8) 370 ENSMUSG00000111325.1 ENSMUSG00000111325 ENSMUST00000213573 Gm47140 sense_intronic Interval_150617 chr7 112840445 112842291 + 0 NA exon (ENSMUSG00000055320.18, exon 1 of 1) protein_coding-exon (ENSMUSG00000055320.18, exon 1 of 1) -112594 ENSMUSG00000098132.1 ENSMUSG00000098132 ENSMUST00000182858 Rassf10 protein_coding Interval_46748 chr13 69896684 69896972 + 0 NA Intergenic Intergenic -63005 ENSMUSG00000113802.1 ENSMUSG00000113802 ENSMUST00000220972 4933416O17Rik lincRNA Interval_138672 chr6 91052503 91053251 + 0 NA exon (ENSMUSG00000030091.17, exon 3 of 3) protein_coding-exon (ENSMUSG00000030091.17, exon 3 of 3) 45745 ENSMUSG00000030091.17 ENSMUSG00000030091 ENSMUST00000203434 Nup210 protein_coding Interval_56994 chr15 3665876 3667402 + 0 NA Intergenic Intergenic -63242 ENSMUSG00000080595.1 ENSMUSG00000080595 ENSMUST00000116945 Gm22031 snRNA Interval_52748 chr14 49313298 49314217 + 0 NA exon (ENSMUSG00000021852.14, exon 4 of 8) protein_coding-exon (ENSMUSG00000021852.14, exon 4 of 8) 13921 ENSMUSG00000115096.1 ENSMUSG00000115096 ENSMUST00000228016 Gm48940 antisense Interval_125942 chr5 76080949 76081768 + 0 NA Intergenic Intergenic -20595 ENSMUSG00000107020.1 ENSMUSG00000107020 ENSMUST00000201529 Gm6051 processed_pseudogene Interval_102039 chr3 16013424 16013721 + 0 NA promoter-TSS (ENSMUSG00000094598.1) miRNA-promoter-TSS (ENSMUSG00000094598.1) -246 ENSMUSG00000094598.1 ENSMUSG00000094598 ENSMUST00000180054 Gm24694 miRNA Interval_21337 chr10 128051679 128053695 + 0 NA Intergenic Intergenic -16585 ENSMUSG00000071072.12 ENSMUSG00000071072 ENSMUST00000148943 Ptges3 protein_coding Interval_30773 chr11 96390315 96391046 + 0 NA Intergenic Intergenic -1432 ENSMUSG00000075587.5 ENSMUSG00000075587 ENSMUST00000117614 Gm11531 processed_pseudogene Interval_106100 chr3 93052662 93053487 + 0 NA Intergenic Intergenic 11890 ENSMUSG00000104298.1 ENSMUSG00000104298 ENSMUST00000193505 Gm38040 unprocessed_pseudogene Interval_54321 chr14 67642636 67642845 + 0 NA Intergenic Intergenic 32366 ENSMUSG00000093726.1 ENSMUSG00000093726 ENSMUST00000175674 Gm20667 sense_overlapping Interval_51021 chr14 21628138 21628978 + 0 NA intron (ENSMUSG00000021767.19, intron 7 of 15) protein_coding-intron (ENSMUSG00000021767.19, intron 8 of 16) 74544 ENSMUSG00000063821.6 ENSMUSG00000063821 ENSMUST00000224735 Dupd1 protein_coding Interval_136779 chr6 60053585 60053786 + 0 NA intron (ENSMUSG00000073045.9, intron 1 of 7) lincRNA-intron (ENSMUSG00000073045.9, intron 1 of 7) 17501 ENSMUSG00000095176.1 ENSMUSG00000095176 ENSMUST00000083820 Gm22723 snoRNA Interval_99059 chr2 156910811 156911627 + 0 NA intron (ENSMUSG00000080880.1, intron 4 of 11) unprocessed_pseudogene-intron (ENSMUSG00000080880.1, intron 4 of 11) 4164 ENSMUSG00000080880.1 ENSMUSG00000080880 ENSMUST00000117381 Gm14278 unprocessed_pseudogene Interval_3467 chr1 58616119 58616612 + 0 NA Intergenic Intergenic 9200 ENSMUSG00000100202.1 ENSMUSG00000100202 ENSMUST00000191562 Gm29389 processed_pseudogene Interval_25261 chr11 45943861 45945399 + 0 NA exon (ENSMUSG00000044847.13, exon 1 of 5) protein_coding-exon (ENSMUSG00000044847.13, exon 1 of 5) 305 ENSMUSG00000044847.13 ENSMUSG00000044847 ENSMUST00000062458 Lsm11 protein_coding Interval_64336 chr16 10578777 10578983 + 0 NA intron (ENSMUSG00000068663.14, intron 8 of 22) protein_coding-intron (ENSMUSG00000068663.14, intron 8 of 20) 33516 ENSMUSG00000068663.14 ENSMUSG00000068663 ENSMUST00000145866 Clec16a protein_coding Interval_52680 chr14 48530397 48530976 + 0 NA exon (ENSMUSG00000115316.1, exon 1 of 1) TEC-exon (ENSMUSG00000115316.1, exon 1 of 1) 328 ENSMUSG00000115316.1 ENSMUSG00000115316 ENSMUST00000227321 Gm49096 TEC Interval_148548 chr7 82341441 82341641 + 0 NA promoter-TSS (ENSMUSG00000109479.1) TEC-promoter-TSS (ENSMUSG00000109479.1) -727 ENSMUSG00000109479.1 ENSMUSG00000109479 ENSMUST00000208587 Gm44919 TEC Interval_75970 chr17 73973078 73973347 + 0 NA Intergenic Intergenic -27648 ENSMUSG00000088060.1 ENSMUSG00000088060 ENSMUST00000157435 Gm24475 snoRNA Interval_138489 chr6 88625542 88625868 + 0 NA intron (ENSMUSG00000033182.12, intron 1 of 1) protein_coding-intron (ENSMUSG00000033182.12, intron 1 of 1) -7183 ENSMUSG00000033182.12 ENSMUSG00000033182 ENSMUST00000184664 Kbtbd12 protein_coding Interval_13791 chr10 22476036 22476408 + 0 NA Intergenic Intergenic -22702 ENSMUSG00000097473.1 ENSMUSG00000097473 ENSMUST00000180890 Gm26585 processed_pseudogene Interval_35351 chr12 20934556 20935976 + 0 NA Intergenic Intergenic -14004 ENSMUSG00000069755.5 ENSMUSG00000069755 ENSMUST00000208744 Zfp125 transcribed_unprocessed_pseudogene Interval_17363 chr10 76078316 76078520 + 0 NA promoter-TSS (ENSMUSG00000086798.1) antisense-promoter-TSS (ENSMUSG00000086798.1) -199 ENSMUSG00000086798.1 ENSMUSG00000086798 ENSMUST00000124320 Gm16222 antisense Interval_155649 chr8 35604509 35604860 + 0 NA intron (ENSMUSG00000070056.6, intron 1 of 2) protein_coding-intron (ENSMUSG00000070056.6, intron 1 of 2) -15712 ENSMUSG00000097357.2 ENSMUSG00000097357 ENSMUST00000181322 Gm16793 bidirectional_promoter_lncRNA Interval_62532 chr15 94463130 94463692 + 0 NA intron (ENSMUSG00000022449.14, intron 1 of 3) protein_coding-intron (ENSMUSG00000022449.14, intron 1 of 3) -59153 ENSMUSG00000022449.14 ENSMUSG00000022449 ENSMUST00000128797 Adamts20 protein_coding Interval_95340 chr2 106760334 106760547 + 0 NA intron (ENSMUSG00000016386.15, intron 2 of 2) protein_coding-intron (ENSMUSG00000016386.15, intron 3 of 6) -48895 ENSMUSG00000105886.1 ENSMUSG00000105886 ENSMUST00000200346 Gm22813 scaRNA Interval_164963 chr9 43453525 43454879 + 0 NA Intergenic Intergenic -9764 ENSMUSG00000111829.1 ENSMUSG00000111829 ENSMUST00000216533 Gm47475 lincRNA Interval_4468 chr1 74386629 74387308 + 0 NA TTS (ENSMUSG00000026177.11) protein_coding-TTS (ENSMUSG00000026177.11) -5194 ENSMUSG00000026176.13 ENSMUSG00000026176 ENSMUST00000152659 Ctdsp1 protein_coding Interval_97497 chr2 137812086 137812410 + 0 NA intron (ENSMUSG00000085640.1, intron 4 of 4) lincRNA-intron (ENSMUSG00000085640.1, intron 4 of 4) 64583 ENSMUSG00000086214.1 ENSMUSG00000086214 ENSMUST00000134795 Gm14062 lincRNA Interval_130792 chr5 130549920 130550211 + 0 NA intron (ENSMUSG00000060371.12, intron 2 of 2) protein_coding-intron (ENSMUSG00000060371.12, intron 3 of 6) 68486 ENSMUSG00000106849.1 ENSMUSG00000106849 ENSMUST00000201334 Gm43418 TEC Interval_78276 chr18 11226052 11226262 + 0 NA Intergenic Intergenic 173113 ENSMUSG00000005836.10 ENSMUSG00000005836 ENSMUST00000234971 Gata6 protein_coding Interval_111335 chr4 19190057 19190433 + 0 NA Intergenic Intergenic -67719 ENSMUSG00000073991.4 ENSMUSG00000073991 ENSMUST00000137780 Cnbd1 protein_coding Interval_62580 chr15 94854884 94856995 + 0 NA intron (ENSMUSG00000063296.5, intron 3 of 7) protein_coding-intron (ENSMUSG00000063296.5, intron 3 of 7) 131199 ENSMUSG00000077447.1 ENSMUSG00000077447 ENSMUST00000104259 Gm23129 snoRNA Interval_102793 chr3 31070665 31070893 + 0 NA Intergenic Intergenic -24282 ENSMUSG00000027660.16 ENSMUSG00000027660 ENSMUST00000118204 Skil protein_coding Interval_116644 chr4 116272880 116273167 + 0 NA intron (ENSMUSG00000111410.1, intron 5 of 9) protein_coding-intron (ENSMUSG00000028698.13, intron 5 of 9) 51405 ENSMUSG00000028698.13 ENSMUSG00000028698 ENSMUST00000106490 Pik3r3 protein_coding Interval_97119 chr2 131422597 131423783 + 0 NA Intergenic Intergenic -7945 ENSMUSG00000081652.1 ENSMUSG00000081652 ENSMUST00000119763 Gm14283 processed_pseudogene Interval_102615 chr3 28484143 28484489 + 0 NA intron (ENSMUSG00000027692.16, intron 1 of 12) protein_coding-intron (ENSMUSG00000027692.16, intron 2 of 30) 64373 ENSMUSG00000092990.1 ENSMUSG00000092990 ENSMUST00000175249 Mir466q miRNA Interval_69021 chr16 90164896 90166269 + 0 NA Intergenic Intergenic 2402 ENSMUSG00000116553.1 ENSMUSG00000116553 ENSMUST00000231626 Gm7307 processed_pseudogene Interval_74582 chr17 53528327 53530350 + 0 NA intron (ENSMUSG00000044957.3, intron 1 of 2) protein_coding-intron (ENSMUSG00000044957.3, intron 1 of 2) 10113 ENSMUSG00000044957.3 ENSMUSG00000044957 ENSMUST00000056198 Pp2d1 protein_coding Interval_16612 chr10 65696171 65696553 + 0 NA Intergenic Intergenic 75837 ENSMUSG00000112720.1 ENSMUSG00000112720 ENSMUST00000218592 Gm19116 processed_pseudogene Interval_154847 chr8 24346479 24347685 + 0 NA Intergenic Intergenic 12354 ENSMUSG00000109299.1 ENSMUSG00000109299 ENSMUST00000207438 Gm45164 lincRNA Interval_152824 chr7 138396754 138398908 + 0 NA promoter-TSS (ENSMUSG00000091002.2) protein_coding-promoter-TSS (ENSMUSG00000091002.2) -101 ENSMUSG00000091002.2 ENSMUSG00000091002 ENSMUST00000162222 Tcerg1l protein_coding Interval_133421 chr6 4935855 4936917 + 0 NA intron (ENSMUSG00000032827.15, intron 1 of 17) protein_coding-intron (ENSMUSG00000032827.15, intron 2 of 15) -5761 ENSMUSG00000097385.1 ENSMUSG00000097385 ENSMUST00000181178 Gm26814 TEC Interval_128023 chr5 110338792 110339082 + 0 NA TTS (ENSMUSG00000029503.16) protein_coding-TTS (ENSMUSG00000029503.16) 4212 ENSMUSG00000029503.16 ENSMUSG00000029503 ENSMUST00000200214 P2rx2 protein_coding Interval_40063 chr12 100952068 100952786 + 0 NA intron (ENSMUSG00000021182.16, intron 12 of 29) protein_coding-intron (ENSMUSG00000021182.16, intron 12 of 29) 10570 ENSMUSG00000097160.2 ENSMUSG00000097160 ENSMUST00000221309 A630072L19Rik antisense Interval_111217 chr4 14921826 14922462 + 0 NA Intergenic Intergenic -8532 ENSMUSG00000086587.7 ENSMUSG00000086587 ENSMUST00000152024 Gm11837 antisense Interval_100390 chr2 168760781 168762745 + 0 NA intron (ENSMUSG00000027547.17, intron 1 of 2) protein_coding-intron (ENSMUSG00000027547.17, intron 1 of 3) -4380 ENSMUSG00000085322.2 ENSMUSG00000085322 ENSMUST00000145105 Gm14261 antisense Interval_25309 chr11 46237068 46237697 + 0 NA intron (ENSMUSG00000048721.2, intron 1 of 1) protein_coding-intron (ENSMUSG00000048721.2, intron 1 of 1) 1851 ENSMUSG00000048721.2 ENSMUSG00000048721 ENSMUST00000060185 Fndc9 protein_coding Interval_21577 chr10 130186899 130187382 + 0 NA Intergenic Intergenic -2967 ENSMUSG00000059862.4 ENSMUSG00000059862 ENSMUST00000078322 Olfr826 protein_coding Interval_159563 chr8 95477867 95478380 + 0 NA intron (ENSMUSG00000046707.9, intron 1 of 8) protein_coding-intron (ENSMUSG00000046707.9, intron 2 of 11) 5500 ENSMUSG00000110635.1 ENSMUSG00000110635 ENSMUST00000212310 Gm45853 TEC Interval_23049 chr11 19340996 19341786 + 0 NA Intergenic Intergenic 19678 ENSMUSG00000081054.1 ENSMUSG00000081054 ENSMUST00000117768 Gm12025 processed_pseudogene Interval_124171 chr5 38859913 38860246 + 0 NA intron (ENSMUSG00000039315.15, intron 2 of 18) protein_coding-intron (ENSMUSG00000039315.15, intron 2 of 18) 16733 ENSMUSG00000039315.15 ENSMUSG00000039315 ENSMUST00000171633 Clnk protein_coding Interval_142714 chr6 145105152 145107218 + 0 NA Intergenic Intergenic 39212 ENSMUSG00000107420.1 ENSMUSG00000107420 ENSMUST00000204561 Gm43910 TEC Interval_58494 chr15 35196853 35197069 + 0 NA Intergenic Intergenic -3843 ENSMUSG00000115345.1 ENSMUSG00000115345 ENSMUST00000228112 Gm33497 lincRNA Interval_34817 chr12 12148545 12149287 + 0 NA Intergenic Intergenic 42179 ENSMUSG00000089047.1 ENSMUSG00000089047 ENSMUST00000158422 Gm26171 rRNA Interval_118814 chr4 133847467 133848492 + 0 NA TTS (ENSMUSG00000003644.17) protein_coding-TTS (ENSMUSG00000003644.17) -24503 ENSMUSG00000085009.1 ENSMUSG00000085009 ENSMUST00000134799 Gm12977 antisense Interval_14032 chr10 25768659 25769408 + 0 NA Intergenic Intergenic -61090 ENSMUSG00000112803.1 ENSMUSG00000112803 ENSMUST00000217933 Gm36543 lincRNA Interval_81121 chr18 54234082 54234435 + 0 NA Intergenic Intergenic -188037 ENSMUSG00000096982.2 ENSMUSG00000096982 ENSMUST00000181269 Redrum lincRNA Interval_87506 chr19 53105275 53106231 + 0 NA Intergenic Intergenic -22931 ENSMUSG00000118233.1 ENSMUSG00000118233 ENSMUST00000236104 Gm30381 lincRNA Interval_34351 chr12 3549883 3551000 + 0 NA Intergenic Intergenic -22029 ENSMUSG00000071454.13 ENSMUSG00000071454 ENSMUST00000174293 Dtnb protein_coding Interval_83354 chr18 84527298 84527972 + 0 NA intron (ENSMUSG00000048410.17, intron 2 of 2) protein_coding-intron (ENSMUSG00000048410.17, intron 2 of 2) -92700 ENSMUSG00000048410.17 ENSMUSG00000048410 ENSMUST00000182297 Zfp407 protein_coding Interval_174665 chrX 162735021 162736715 + 0 NA exon (ENSMUSG00000086034.1, exon 2 of 2) processed_transcript-exon (ENSMUSG00000086034.1, exon 2 of 2) 745 ENSMUSG00000086034.1 ENSMUSG00000086034 ENSMUST00000136472 Gm15201 processed_transcript Interval_87003 chr19 45472740 45472995 + 0 NA intron (ENSMUSG00000025217.15, intron 5 of 13) protein_coding-intron (ENSMUSG00000025217.15, intron 4 of 14) -21672 ENSMUSG00000057605.4 ENSMUSG00000057605 ENSMUST00000077435 Gm6807 processed_pseudogene Interval_84330 chr19 10162417 10163054 + 0 NA Intergenic Intergenic 13426 ENSMUSG00000117700.1 ENSMUSG00000117700 ENSMUST00000235345 Gm50359 processed_pseudogene Interval_120656 chr4 149942958 149943313 + 0 NA promoter-TSS (ENSMUSG00000039911.13) protein_coding-promoter-TSS (ENSMUSG00000039911.13) -20664 ENSMUSG00000039911.13 ENSMUSG00000039911 ENSMUST00000135896 Spsb1 protein_coding Interval_129847 chr5 122731022 122731777 + 0 NA exon (ENSMUSG00000029471.13, exon 17 of 17) protein_coding-exon (ENSMUSG00000029471.13, exon 17 of 17) 23819 ENSMUSG00000029470.15 ENSMUSG00000029470 ENSMUST00000139712 P2rx4 protein_coding Interval_166578 chr9 61046617 61046898 + 0 NA intron (ENSMUSG00000111147.1, intron 2 of 6) lincRNA-intron (ENSMUSG00000111147.1, intron 2 of 6) 8912 ENSMUSG00000111180.1 ENSMUSG00000111180 ENSMUST00000216861 Gm39348 lincRNA Interval_129500 chr5 120587658 120589233 + 0 NA promoter-TSS (ENSMUSG00000029601.13) protein_coding-promoter-TSS (ENSMUSG00000029601.13) 149 ENSMUSG00000032741.9 ENSMUSG00000032741 ENSMUST00000201601 Tpcn1 protein_coding Interval_14384 chr10 32244264 32244452 + 0 NA intron (ENSMUSG00000069670.8, intron 3 of 3) protein_coding-intron (ENSMUSG00000069670.8, intron 3 of 6) 22181 ENSMUSG00000112367.1 ENSMUSG00000112367 ENSMUST00000218326 A230081H15Rik TEC Interval_3318 chr1 56839088 56839347 + 0 NA intron (ENSMUSG00000038331.15, intron 5 of 6) protein_coding-intron (ENSMUSG00000038331.15, intron 8 of 9) 130655 ENSMUSG00000038331.15 ENSMUSG00000038331 ENSMUST00000177282 Satb2 protein_coding Interval_81591 chr18 61944499 61945330 + 0 NA Intergenic Intergenic -9694 ENSMUSG00000104035.1 ENSMUSG00000104035 ENSMUST00000194401 Gm37774 TEC Interval_159495 chr8 95080325 95081605 + 0 NA promoter-TSS (ENSMUSG00000031787.8) protein_coding-promoter-TSS (ENSMUSG00000031787.8) -1631 ENSMUSG00000031787.8 ENSMUSG00000031787 ENSMUST00000212565 Katnb1 protein_coding Interval_67507 chr16 50026507 50026798 + 0 NA Intergenic Intergenic -84421 ENSMUSG00000098028.1 ENSMUSG00000098028 ENSMUST00000182962 Gm8824 processed_pseudogene Interval_141158 chr6 125323093 125323840 + 0 NA intron (ENSMUSG00000030340.16, intron 2 of 12) protein_coding-intron (ENSMUSG00000030340.16, intron 1 of 11) 1945 ENSMUSG00000030340.16 ENSMUSG00000030340 ENSMUST00000177329 Scnn1a protein_coding Interval_88532 chr2 5877271 5878168 + 0 NA promoter-TSS (ENSMUSG00000025816.15) protein_coding-promoter-TSS (ENSMUSG00000025816.15) -14785 ENSMUSG00000056718.2 ENSMUSG00000056718 ENSMUST00000071016 Gm13199 protein_coding Interval_68696 chr16 84796358 84796546 + 0 NA intron (ENSMUSG00000053062.16, intron 1 of 9) protein_coding-intron (ENSMUSG00000053062.16, intron 1 of 3) 2894 ENSMUSG00000053062.16 ENSMUSG00000053062 ENSMUST00000138054 Jam2 protein_coding Interval_61496 chr15 81985240 81986026 + 0 NA Intergenic Intergenic 5093 ENSMUSG00000061633.3 ENSMUSG00000061633 ENSMUST00000074608 1700029P11Rik protein_coding Interval_108611 chr3 129555461 129555804 + 0 NA intron (ENSMUSG00000041220.10, intron 1 of 2) protein_coding-intron (ENSMUSG00000041220.10, intron 2 of 4) 17491 ENSMUSG00000106092.1 ENSMUSG00000106092 ENSMUST00000200283 Gm43072 TEC Interval_120832 chr4 150900856 150902304 + 0 NA exon (ENSMUSG00000028964.14, exon 1 of 3) protein_coding-exon (ENSMUSG00000028964.14, exon 1 of 3) 8248 ENSMUSG00000028964.14 ENSMUSG00000028964 ENSMUST00000146184 Park7 protein_coding Interval_16595 chr10 64741850 64742064 + 0 NA intron (ENSMUSG00000060843.11, intron 13 of 17) protein_coding-intron (ENSMUSG00000060843.11, intron 12 of 16) 378410 ENSMUSG00000100528.1 ENSMUSG00000100528 ENSMUST00000187710 Gm28881 lincRNA Interval_101884 chr3 10372670 10372931 + 0 NA intron (ENSMUSG00000027536.6, intron 1 of 4) protein_coding-intron (ENSMUSG00000027536.6, intron 1 of 4) 5842 ENSMUSG00000027536.6 ENSMUSG00000027536 ENSMUST00000191826 Chmp4c protein_coding Interval_5158 chr1 86116391 86116628 + 0 NA intron (ENSMUSG00000026229.17, intron 1 of 6) protein_coding-intron (ENSMUSG00000026229.17, intron 16 of 24) -4374 ENSMUSG00000103272.1 ENSMUSG00000103272 ENSMUST00000195317 Gm37914 TEC Interval_5083 chr1 84846095 84846389 + 0 NA intron (ENSMUSG00000073633.9, intron 1 of 3) protein_coding-intron (ENSMUSG00000073633.9, intron 1 of 3) -21559 ENSMUSG00000104503.1 ENSMUSG00000104503 ENSMUST00000192396 Gm37738 TEC Interval_161166 chr8 117959071 117959415 + 0 NA Intergenic Intergenic 157181 ENSMUSG00000074065.4 ENSMUSG00000074065 ENSMUST00000098368 Gm10617 pseudogene Interval_142638 chr6 144486826 144487119 + 0 NA intron (ENSMUSG00000087157.1, intron 2 of 3) protein_coding-intron (ENSMUSG00000041540.16, intron 3 of 13) 5747 ENSMUSG00000087157.1 ENSMUSG00000087157 ENSMUST00000156443 Sox5os2 antisense Interval_82382 chr18 73551250 73552036 + 0 NA Intergenic Intergenic -18093 ENSMUSG00000065922.1 ENSMUSG00000065922 ENSMUST00000083988 n-R5-8s1 rRNA Interval_40501 chr12 105273491 105273749 + 0 NA Intergenic Intergenic -50924 ENSMUSG00000041359.14 ENSMUSG00000041359 ENSMUST00000176952 Tcl1 protein_coding Interval_84757 chr19 16329211 16329540 + 0 NA intron (ENSMUSG00000024639.5, intron 3 of 6) protein_coding-intron (ENSMUSG00000024639.5, intron 3 of 6) -14371 ENSMUSG00000098718.1 ENSMUSG00000098718 ENSMUST00000184935 Mir496b miRNA Interval_28289 chr11 74933951 74934144 + 0 NA intron (ENSMUSG00000038290.15, intron 3 of 16) protein_coding-intron (ENSMUSG00000038290.15, intron 4 of 18) 2104 ENSMUSG00000088719.1 ENSMUSG00000088719 ENSMUST00000158094 Gm22733 snRNA Interval_44620 chr13 46766658 46766841 + 0 NA TTS (ENSMUSG00000064558.1) snoRNA-TTS (ENSMUSG00000064558.1) 900 ENSMUSG00000064558.1 ENSMUSG00000064558 ENSMUST00000082624 Gm24620 snoRNA Interval_10187 chr1 166911963 166913091 + 0 NA Intergenic Intergenic 33831 ENSMUSG00000086925.1 ENSMUSG00000086925 ENSMUST00000145247 Gm6286 processed_pseudogene Interval_117936 chr4 127181007 127181804 + 0 NA intron (ENSMUSG00000042388.14, intron 1 of 11) protein_coding-intron (ENSMUSG00000042388.14, intron 1 of 11) -21901 ENSMUSG00000042388.14 ENSMUSG00000042388 ENSMUST00000137062 Dlgap3 protein_coding Interval_161229 chr8 118906475 118907129 + 0 NA intron (ENSMUSG00000031841.19, intron 5 of 7) protein_coding-intron (ENSMUSG00000031841.19, intron 5 of 13) 179902 ENSMUSG00000087707.1 ENSMUSG00000087707 ENSMUST00000157082 Gm22999 snoRNA Interval_117751 chr4 126016261 126016989 + 0 NA Intergenic Intergenic -8101 ENSMUSG00000028859.14 ENSMUSG00000028859 ENSMUST00000140426 Csf3r protein_coding Interval_117691 chr4 125573998 125574594 + 0 NA intron (ENSMUSG00000001985.9, intron 1 of 15) protein_coding-intron (ENSMUSG00000001985.9, intron 1 of 15) 69547 ENSMUSG00000094403.1 ENSMUSG00000094403 ENSMUST00000102081 Mir692-2 miRNA Interval_62963 chr15 98241297 98241633 + 0 NA Intergenic Intergenic -7215 ENSMUSG00000059460.7 ENSMUSG00000059460 ENSMUST00000205393 Olfr286 protein_coding Interval_79843 chr18 35540010 35540739 + 0 NA Intergenic Intergenic 3791 ENSMUSG00000062742.4 ENSMUSG00000062742 ENSMUST00000081864 Gm5239 processed_pseudogene Interval_19507 chr10 100820815 100821297 + 0 NA Intergenic Intergenic -79421 ENSMUSG00000112104.1 ENSMUSG00000112104 ENSMUST00000218270 Gm35722 lincRNA Interval_98816 chr2 155271614 155272168 + 0 NA Intergenic Intergenic -4998 ENSMUSG00000027602.9 ENSMUSG00000027602 ENSMUST00000154596 Map1lc3a protein_coding Interval_135312 chr6 38229396 38229687 + 0 NA intron (ENSMUSG00000063455.16, intron 1 of 19) protein_coding-intron (ENSMUSG00000063455.16, intron 1 of 19) 24468 ENSMUSG00000063455.16 ENSMUSG00000063455 ENSMUST00000152464 D630045J12Rik protein_coding Interval_115400 chr4 98660181 98660481 + 0 NA intron (ENSMUSG00000061859.17, intron 33 of 33) protein_coding-intron (ENSMUSG00000061859.17, intron 8 of 15) -1306 ENSMUSG00000076294.1 ENSMUSG00000076294 ENSMUST00000102339 Gm26154 miRNA Interval_161633 chr8 121693042 121694984 + 0 NA intron (ENSMUSG00000092329.1, intron 1 of 15) protein_coding-intron (ENSMUSG00000092329.1, intron 1 of 15) -19925 ENSMUSG00000110673.1 ENSMUSG00000110673 ENSMUST00000211931 Gm45833 lincRNA Interval_160902 chr8 114803249 114803461 + 0 NA intron (ENSMUSG00000004637.15, intron 8 of 8) protein_coding-intron (ENSMUSG00000004637.15, intron 8 of 8) 91188 ENSMUSG00000004637.15 ENSMUSG00000004637 ENSMUST00000162052 Wwox protein_coding Interval_170258 chr9 106501462 106502647 + 0 NA exon (ENSMUSG00000066383.7, exon 3 of 3) protein_coding-exon (ENSMUSG00000066383.7, exon 3 of 3) 2053 ENSMUSG00000066383.7 ENSMUSG00000066383 ENSMUST00000215037 Iqcf1 protein_coding Interval_138658 chr6 90887161 90887650 + 0 NA intron (ENSMUSG00000034312.15, intron 1 of 15) protein_coding-intron (ENSMUSG00000034312.15, intron 1 of 15) -18414 ENSMUSG00000099662.1 ENSMUSG00000099662 ENSMUST00000117103 Ppp1r2-ps2 processed_pseudogene Interval_13060 chr10 10885200 10885596 + 0 NA intron (ENSMUSG00000019828.13, intron 3 of 9) protein_coding-intron (ENSMUSG00000019828.13, intron 3 of 8) 134352 ENSMUSG00000112730.1 ENSMUSG00000112730 ENSMUST00000219096 4930567K20Rik antisense Interval_118892 chr4 134314293 134315266 + 0 NA promoter-TSS (ENSMUSG00000028834.13) protein_coding-promoter-TSS (ENSMUSG00000028834.13) -5209 ENSMUSG00000028834.13 ENSMUSG00000028834 ENSMUST00000135576 Trim63 protein_coding Interval_93422 chr2 72963041 72963640 + 0 NA intron (ENSMUSG00000027109.16, intron 1 of 1) protein_coding-intron (ENSMUSG00000027109.16, intron 3 of 5) 7126 ENSMUSG00000027109.16 ENSMUSG00000027109 ENSMUST00000141372 Sp3 protein_coding Interval_138792 chr6 91901465 91902088 + 0 NA Intergenic Intergenic -1033 ENSMUSG00000034063.8 ENSMUSG00000034063 ENSMUST00000205569 4930590J08Rik protein_coding Interval_71565 chr17 24582195 24582672 + 0 NA exon (ENSMUSG00000032855.6, exon 3 of 3) protein_coding-exon (ENSMUSG00000032855.6, exon 3 of 3) -5186 ENSMUSG00000032855.6 ENSMUSG00000032855 ENSMUST00000228581 Pkd1 protein_coding Interval_41299 chr12 112570269 112571390 + 0 NA Intergenic Intergenic -33828 ENSMUSG00000037679.9 ENSMUSG00000037679 ENSMUST00000222275 Inf2 protein_coding Interval_34253 chr11 121641590 121642744 + 0 NA intron (ENSMUSG00000046605.14, intron 5 of 12) protein_coding-intron (ENSMUSG00000046605.14, intron 5 of 8) 30986 ENSMUSG00000046605.14 ENSMUSG00000046605 ENSMUST00000062654 B3gntl1 protein_coding Interval_5623 chr1 90289063 90290221 + 0 NA Intergenic Intergenic 9184 ENSMUSG00000101028.1 ENSMUSG00000101028 ENSMUST00000188640 Gm28723 lincRNA Interval_24588 chr11 34843650 34843974 + 0 NA Intergenic Intergenic -1458 ENSMUSG00000077543.1 ENSMUSG00000077543 ENSMUST00000104355 Gm22022 snoRNA Interval_137531 chr6 72920973 72921850 + 0 NA Intergenic Intergenic -21708 ENSMUSG00000055239.10 ENSMUSG00000055239 ENSMUST00000204708 Kcmf1 protein_coding Interval_99589 chr2 163401194 163402059 + 0 NA Intergenic Intergenic -3633 ENSMUSG00000017817.11 ENSMUSG00000017817 ENSMUST00000109425 Jph2 protein_coding Interval_164107 chr9 31543287 31543977 + 0 NA Intergenic Intergenic -15977 ENSMUSG00000111853.1 ENSMUSG00000111853 ENSMUST00000216695 Gm31408 lincRNA Interval_87720 chr19 55418605 55419758 + 0 NA intron (ENSMUSG00000024983.10, intron 5 of 7) protein_coding-intron (ENSMUSG00000024983.10, intron 5 of 7) 102854 ENSMUSG00000024983.10 ENSMUSG00000024983 ENSMUST00000224396 Vti1a protein_coding Interval_23872 chr11 27362600 27363322 + 0 NA Intergenic Intergenic -43983 ENSMUSG00000088438.1 ENSMUSG00000088438 ENSMUST00000157813 Gm25387 snoRNA Interval_7789 chr1 133701959 133702360 + 0 NA promoter-TSS (ENSMUSG00000026463.17) protein_coding-promoter-TSS (ENSMUSG00000026463.17) -278 ENSMUSG00000026463.17 ENSMUSG00000026463 ENSMUST00000128692 Atp2b4 protein_coding Interval_134692 chr6 30435737 30436083 + 0 NA intron (ENSMUSG00000029775.14, intron 2 of 9) protein_coding-intron (ENSMUSG00000029775.14, intron 1 of 8) -7860 ENSMUSG00000029775.14 ENSMUSG00000029775 ENSMUST00000150854 Klhdc10 protein_coding Interval_5671 chr1 90810507 90810813 + 0 NA exon (ENSMUSG00000048126.16, exon 8 of 44) protein_coding-exon (ENSMUSG00000048126.16, exon 8 of 44) 28473 ENSMUSG00000103061.1 ENSMUSG00000103061 ENSMUST00000193688 Gm36970 TEC Interval_100842 chr2 172839358 172839842 + 0 NA Intergenic Intergenic 24741 ENSMUSG00000093160.1 ENSMUSG00000093160 ENSMUST00000175419 Gm22773 miRNA Interval_171472 chr9 118596796 118597206 + 0 NA Intergenic Intergenic -6806 ENSMUSG00000110676.1 ENSMUSG00000110676 ENSMUST00000212679 Gm45897 lincRNA Interval_157384 chr8 70010614 70014289 + 0 NA Intergenic Intergenic -1449 ENSMUSG00000110545.1 ENSMUSG00000110545 ENSMUST00000212486 Gm7730 processed_pseudogene Interval_11292 chr1 180793418 180794703 + 0 NA Intergenic Intergenic -19716 ENSMUSG00000073485.3 ENSMUSG00000073485 ENSMUST00000097448 H3f3aos antisense Interval_112697 chr4 44161457 44162273 + 0 NA intron (ENSMUSG00000035696.15, intron 1 of 5) protein_coding-intron (ENSMUSG00000035696.15, intron 2 of 3) 6418 ENSMUSG00000035696.15 ENSMUSG00000035696 ENSMUST00000147302 Rnf38 protein_coding Interval_136445 chr6 54549525 54549750 + 0 NA intron (ENSMUSG00000019124.10, intron 1 of 7) protein_coding-intron (ENSMUSG00000019124.10, intron 1 of 7) -40276 ENSMUSG00000019124.10 ENSMUSG00000019124 ENSMUST00000140235 Scrn1 protein_coding Interval_56575 chr14 120432723 120433771 + 0 NA Intergenic Intergenic -44262 ENSMUSG00000097903.2 ENSMUSG00000097903 ENSMUST00000181685 Gm26679 antisense Interval_94045 chr2 82211892 82212247 + 0 NA intron (ENSMUSG00000070866.4, intron 1 of 3) protein_coding-intron (ENSMUSG00000070866.4, intron 1 of 3) -23104 ENSMUSG00000070866.4 ENSMUSG00000070866 ENSMUST00000127187 Zfp804a protein_coding Interval_61798 chr15 84218139 84219347 + 0 NA Intergenic Intergenic 16901 ENSMUSG00000022437.7 ENSMUSG00000022437 ENSMUST00000229751 Samm50 protein_coding Interval_8826 chr1 151407673 151408966 + 0 NA intron (ENSMUSG00000052748.14, intron 3 of 7) protein_coding-intron (ENSMUSG00000052748.14, intron 6 of 19) -3712 ENSMUSG00000052748.14 ENSMUSG00000052748 ENSMUST00000185247 Swt1 protein_coding Interval_163340 chr9 20958342 20958928 + 0 NA intron (ENSMUSG00000004099.16, intron 1 of 38) protein_coding-intron (ENSMUSG00000004099.16, intron 1 of 38) -6030 ENSMUSG00000004099.16 ENSMUSG00000004099 ENSMUST00000216135 Dnmt1 protein_coding Interval_95762 chr2 115950672 115950925 + 0 NA intron (ENSMUSG00000027210.20, intron 3 of 3) protein_coding-intron (ENSMUSG00000027210.20, intron 8 of 11) -81931 ENSMUSG00000027210.20 ENSMUSG00000027210 ENSMUST00000138526 Meis2 protein_coding Interval_153160 chr7 141959157 141959503 + 0 NA intron (ENSMUSG00000053046.16, intron 1 of 19) protein_coding-intron (ENSMUSG00000053046.16, intron 1 of 18) -9791 ENSMUSG00000092536.2 ENSMUSG00000092536 ENSMUST00000211303 Gm20501 bidirectional_promoter_lncRNA Interval_142305 chr6 140554421 140554725 + 0 NA intron (ENSMUSG00000030231.11, intron 5 of 18) protein_coding-intron (ENSMUSG00000030231.11, intron 13 of 30) -8995 ENSMUSG00000030231.11 ENSMUSG00000030231 ENSMUST00000204528 Plekha5 protein_coding Interval_35076 chr12 17089916 17090592 + 0 NA Intergenic Intergenic 24841 ENSMUSG00000113447.1 ENSMUSG00000113447 ENSMUST00000221508 Gm48538 lincRNA Interval_96325 chr2 121626817 121627378 + 0 NA intron (ENSMUSG00000027238.17, intron 1 of 7) protein_coding-intron (ENSMUSG00000027238.17, intron 1 of 13) 74628 ENSMUSG00000081264.1 ENSMUSG00000081264 ENSMUST00000117683 Gm14021 processed_pseudogene Interval_1162 chr1 16440032 16440438 + 0 NA TTS (ENSMUSG00000025920.19) protein_coding-TTS (ENSMUSG00000025920.19) 79071 ENSMUSG00000025920.19 ENSMUSG00000025920 ENSMUST00000144138 Stau2 protein_coding Interval_162765 chr9 8751616 8751838 + 0 NA Intergenic Intergenic -10739 ENSMUSG00000111602.1 ENSMUSG00000111602 ENSMUST00000214779 Gm32014 lincRNA Interval_35219 chr12 18390708 18391313 + 0 NA Intergenic Intergenic 3255 ENSMUSG00000113402.1 ENSMUSG00000113402 ENSMUST00000221998 Gm40848 processed_pseudogene Interval_98838 chr2 155455300 155455689 + 0 NA intron (ENSMUSG00000038369.14, intron 1 of 15) protein_coding-intron (ENSMUSG00000038369.14, intron 1 of 15) 5398 ENSMUSG00000080237.2 ENSMUSG00000080237 ENSMUST00000116491 Gm14239 processed_pseudogene Interval_47634 chr13 90454473 90455418 + 0 NA Intergenic Intergenic -36845 ENSMUSG00000114204.1 ENSMUSG00000114204 ENSMUST00000225049 Gm47520 lincRNA Interval_67309 chr16 45816995 45817478 + 0 NA intron (ENSMUSG00000033149.17, intron 3 of 15) protein_coding-intron (ENSMUSG00000033149.17, intron 2 of 17) -44953 ENSMUSG00000033149.17 ENSMUSG00000033149 ENSMUST00000136317 Phldb2 protein_coding Interval_174015 chrX 129708133 129708362 + 0 NA Intergenic Intergenic -41495 ENSMUSG00000034480.18 ENSMUSG00000034480 ENSMUST00000133457 Diaph2 protein_coding Interval_133327 chr6 3267995 3269793 + 0 NA Intergenic Intergenic -8659 ENSMUSG00000106945.1 ENSMUSG00000106945 ENSMUST00000202023 Gm42961 processed_pseudogene Interval_73009 chr17 34112418 34112680 + 0 NA TTS (ENSMUSG00000024335.20) protein_coding-TTS (ENSMUSG00000024335.20) 4646 ENSMUSG00000024335.20 ENSMUSG00000024335 ENSMUST00000179687 Brd2 protein_coding Interval_131333 chr5 136536709 136537052 + 0 NA promoter-TSS (ENSMUSG00000104369.1) TEC-promoter-TSS (ENSMUSG00000104369.1) -403 ENSMUSG00000104369.1 ENSMUSG00000104369 ENSMUST00000192800 Gm38082 TEC Interval_41150 chr12 111508249 111508869 + 0 NA Intergenic Intergenic -8937 ENSMUSG00000113029.1 ENSMUSG00000113029 ENSMUST00000220837 Gm40578 antisense Interval_9925 chr1 164148001 164148216 + 0 NA TTS (ENSMUSG00000086593.2) lincRNA-TTS (ENSMUSG00000086593.2) -1742 ENSMUSG00000090081.1 ENSMUSG00000090081 ENSMUST00000161943 Gm16587 antisense Interval_124749 chr5 53657706 53659038 + 0 NA Intergenic Intergenic 19740 ENSMUSG00000039191.12 ENSMUSG00000039191 ENSMUST00000202092 Rbpj protein_coding Interval_52694 chr14 48664805 48666970 + 0 NA promoter-TSS (ENSMUSG00000021848.16) protein_coding-promoter-TSS (ENSMUSG00000021848.16) 1631 ENSMUSG00000021848.16 ENSMUSG00000021848 ENSMUST00000228512 Otx2 protein_coding Interval_47723 chr13 91801635 91801962 + 0 NA promoter-TSS (ENSMUSG00000021621.15) protein_coding-promoter-TSS (ENSMUSG00000021621.15) -803 ENSMUSG00000021621.15 ENSMUSG00000021621 ENSMUST00000179368 Zcchc9 protein_coding Interval_98554 chr2 153189396 153190509 + 0 NA promoter-TSS (ENSMUSG00000068040.10) protein_coding-promoter-TSS (ENSMUSG00000068040.10) -10296 ENSMUSG00000068040.10 ENSMUSG00000068040 ENSMUST00000149390 Tm9sf4 protein_coding Interval_146915 chr7 55841430 55843217 + 0 NA promoter-TSS (ENSMUSG00000030447.15) protein_coding-promoter-TSS (ENSMUSG00000030447.15) -29536 ENSMUSG00000030447.15 ENSMUSG00000030447 ENSMUST00000205656 Cyfip1 protein_coding Interval_167619 chr9 71187323 71189593 + 0 NA intron (ENSMUSG00000111429.1, intron 5 of 5) antisense-intron (ENSMUSG00000111429.1, intron 2 of 2) 19682 ENSMUSG00000111429.1 ENSMUSG00000111429 ENSMUST00000217021 Gm32511 antisense Interval_94259 chr2 87047190 87047391 + 0 NA exon (ENSMUSG00000075164.2, exon 2 of 2) protein_coding-exon (ENSMUSG00000075164.2, exon 2 of 2) 4983 ENSMUSG00000075164.2 ENSMUSG00000075164 ENSMUST00000099867 Olfr1106 protein_coding Interval_54302 chr14 67350860 67351681 + 0 NA intron (ENSMUSG00000093472.1, intron 5 of 5) protein_coding-intron (ENSMUSG00000022053.13, intron 7 of 16) -15342 ENSMUSG00000093386.1 ENSMUSG00000093386 ENSMUST00000177127 1700120O09Rik processed_transcript Interval_23048 chr11 19333746 19334075 + 0 NA Intergenic Intergenic 27159 ENSMUSG00000081054.1 ENSMUSG00000081054 ENSMUST00000117768 Gm12025 processed_pseudogene Interval_171345 chr9 116553139 116553464 + 0 NA Intergenic Intergenic 222133 ENSMUSG00000110752.1 ENSMUSG00000110752 ENSMUST00000217456 D730003K21Rik lincRNA Interval_174144 chrX 136213154 136216183 + 0 NA promoter-TSS (ENSMUSG00000079428.8) protein_coding-promoter-TSS (ENSMUSG00000079428.8) -111 ENSMUSG00000079428.8 ENSMUSG00000079428 ENSMUST00000113116 Tceal7 protein_coding Interval_100484 chr2 169441232 169441440 + 0 NA Intergenic Intergenic -35886 ENSMUSG00000085350.1 ENSMUSG00000085350 ENSMUST00000131509 4930529I22Rik lincRNA Interval_10872 chr1 176466377 176466765 + 0 NA intron (ENSMUSG00000104021.1, intron 2 of 3) lincRNA-intron (ENSMUSG00000104021.1, intron 2 of 3) 60702 ENSMUSG00000104021.1 ENSMUSG00000104021 ENSMUST00000194241 Gm36536 lincRNA Interval_122380 chr5 21826028 21827310 + 0 NA intron (ENSMUSG00000029015.9, intron 7 of 13) protein_coding-intron (ENSMUSG00000029015.9, intron 9 of 19) -6152 ENSMUSG00000029015.9 ENSMUSG00000029015 ENSMUST00000150012 Slc26a5 protein_coding Interval_24762 chr11 36926879 36927782 + 0 NA intron (ENSMUSG00000049336.16, intron 1 of 28) protein_coding-intron (ENSMUSG00000049336.16, intron 1 of 28) 16836 ENSMUSG00000049336.16 ENSMUSG00000049336 ENSMUST00000157030 Tenm2 protein_coding Interval_33051 chr11 113885972 113886638 + 0 NA intron (ENSMUSG00000041592.16, intron 4 of 11) protein_coding-intron (ENSMUSG00000041592.16, intron 4 of 44) -75882 ENSMUSG00000041592.16 ENSMUSG00000041592 ENSMUST00000144301 Sdk2 protein_coding Interval_1446 chr1 23539540 23539929 + 0 NA Intergenic Intergenic -34853 ENSMUSG00000099503.1 ENSMUSG00000099503 ENSMUST00000191140 Gm28822 lincRNA Interval_123561 chr5 33495811 33496599 + 0 NA Intergenic Intergenic -58741 ENSMUSG00000107248.1 ENSMUSG00000107248 ENSMUST00000200726 Gm43851 lincRNA Interval_66948 chr16 38712214 38713993 + 0 NA promoter-TSS (ENSMUSG00000022799.4) protein_coding-promoter-TSS (ENSMUSG00000022799.4) -205 ENSMUSG00000022799.4 ENSMUSG00000022799 ENSMUST00000132697 Arhgap31 protein_coding Interval_174251 chrX 141747492 141747693 + 0 NA Intergenic Intergenic -22329 ENSMUSG00000054667.7 ENSMUSG00000054667 ENSMUST00000067841 Irs4 protein_coding Interval_99166 chr2 157703483 157703696 + 0 NA Intergenic Intergenic 10212 ENSMUSG00000077290.1 ENSMUSG00000077290 ENSMUST00000104102 Gm25407 snoRNA Interval_93405 chr2 72865626 72866516 + 0 NA Intergenic Intergenic -52354 ENSMUSG00000085427.7 ENSMUSG00000085427 ENSMUST00000125746 6430710C18Rik lincRNA Interval_85460 chr19 26717962 26718402 + 0 NA intron (ENSMUSG00000024921.17, intron 2 of 6) protein_coding-intron (ENSMUSG00000024921.17, intron 26 of 32) -30220 ENSMUSG00000024921.17 ENSMUSG00000024921 ENSMUST00000208984 Smarca2 protein_coding Interval_6901 chr1 120539428 120540032 + 0 NA Intergenic Intergenic -34974 ENSMUSG00000026390.7 ENSMUSG00000026390 ENSMUST00000186432 Marco protein_coding Interval_135440 chr6 39377199 39378190 + 0 NA promoter-TSS (ENSMUSG00000029924.12) protein_coding-promoter-TSS (ENSMUSG00000029924.12) -37 ENSMUSG00000029924.12 ENSMUSG00000029924 ENSMUST00000202785 Slc37a3 protein_coding Interval_133209 chr5 150569279 150569876 + 0 NA TTS (ENSMUSG00000041147.10) protein_coding-TTS (ENSMUSG00000041147.10) 1521 ENSMUSG00000106980.1 ENSMUSG00000106980 ENSMUST00000201213 Gm43690 lincRNA Interval_80820 chr18 47569009 47570212 + 0 NA intron (ENSMUSG00000118259.1, intron 1 of 5) lincRNA-intron (ENSMUSG00000118259.1, intron 1 of 5) 31875 ENSMUSG00000118259.1 ENSMUSG00000118259 ENSMUST00000236621 Gm5095 lincRNA Interval_110878 chr4 9454454 9454623 + 0 NA intron (ENSMUSG00000028207.18, intron 22 of 22) protein_coding-intron (ENSMUSG00000028207.18, intron 23 of 23) -7339 ENSMUSG00000087564.1 ENSMUSG00000087564 ENSMUST00000155578 Gm11817 antisense Interval_47034 chr13 74517234 74518305 + 0 NA intron (ENSMUSG00000113019.1, intron 1 of 3) lincRNA-intron (ENSMUSG00000113019.1, intron 1 of 3) 4692 ENSMUSG00000113019.1 ENSMUSG00000113019 ENSMUST00000220784 Gm47467 lincRNA Interval_49694 chr13 114047156 114049620 + 0 NA intron (ENSMUSG00000042348.10, intron 5 of 5) protein_coding-intron (ENSMUSG00000042348.10, intron 4 of 4) 72028 ENSMUSG00000114696.1 ENSMUSG00000114696 ENSMUST00000223997 Gm47479 TEC Interval_44819 chr13 48907373 48907834 + 0 NA intron (ENSMUSG00000038014.7, intron 10 of 17) protein_coding-intron (ENSMUSG00000038014.7, intron 10 of 17) -36484 ENSMUSG00000038025.8 ENSMUSG00000038025 ENSMUST00000035540 Phf2 protein_coding Interval_160036 chr8 105951317 105951768 + 0 NA TTS (ENSMUSG00000099131.1) miRNA-TTS (ENSMUSG00000099131.1) 157 ENSMUSG00000099131.1 ENSMUSG00000099131 ENSMUST00000183884 Mir7074 miRNA Interval_31392 chr11 100395416 100398163 + 0 NA intron (ENSMUSG00000001552.14, intron 1 of 2) protein_coding-intron (ENSMUSG00000001552.14, intron 1 of 13) 974 ENSMUSG00000001552.14 ENSMUSG00000001552 ENSMUST00000123903 Jup protein_coding Interval_151965 chr7 127840982 127842703 + 0 NA promoter-TSS (ENSMUSG00000030805.14) protein_coding-promoter-TSS (ENSMUSG00000030805.14) -136 ENSMUSG00000030805.14 ENSMUSG00000030805 ENSMUST00000125861 Stx4a protein_coding Interval_9478 chr1 157514259 157514614 + 0 NA intron (ENSMUSG00000026589.14, intron 2 of 27) protein_coding-intron (ENSMUSG00000026589.14, intron 1 of 26) -2715 ENSMUSG00000087093.2 ENSMUSG00000087093 ENSMUST00000135147 Gm15486 antisense Interval_174483 chrX 153237111 153238486 + 0 NA promoter-TSS (ENSMUSG00000041649.13) protein_coding-promoter-TSS (ENSMUSG00000041649.13) 332 ENSMUSG00000041649.13 ENSMUSG00000041649 ENSMUST00000039545 Klf8 protein_coding Interval_17593 chr10 78047831 78050271 + 0 NA promoter-TSS (ENSMUSG00000000730.13) protein_coding-promoter-TSS (ENSMUSG00000000730.13) -908 ENSMUSG00000000730.13 ENSMUSG00000000730 ENSMUST00000123940 Dnmt3l protein_coding Interval_63961 chr16 4862843 4863390 + 0 NA exon (ENSMUSG00000022518.16, exon 12 of 16) protein_coding-exon (ENSMUSG00000022518.16, exon 12 of 16) -1207 ENSMUSG00000022518.16 ENSMUSG00000022518 ENSMUST00000180939 4930562C15Rik protein_coding Interval_64667 chr16 14011651 14011995 + 0 NA promoter-TSS (ENSMUSG00000082554.1) processed_pseudogene-promoter-TSS (ENSMUSG00000082554.1) -107 ENSMUSG00000082554.1 ENSMUSG00000082554 ENSMUST00000120696 Gm15806 processed_pseudogene Interval_132850 chr5 148310765 148311259 + 0 NA intron (ENSMUSG00000029651.16, intron 3 of 3) protein_coding-intron (ENSMUSG00000029651.16, intron 6 of 6) 75020 ENSMUSG00000029651.16 ENSMUSG00000029651 ENSMUST00000085554 Mtus2 protein_coding Interval_96043 chr2 119397159 119397582 + 0 NA intron (ENSMUSG00000034154.15, intron 28 of 35) protein_coding-intron (ENSMUSG00000034154.15, intron 28 of 35) 42310 ENSMUSG00000034154.15 ENSMUSG00000034154 ENSMUST00000138707 Ino80 protein_coding Interval_158765 chr8 86114631 86115186 + 0 NA Intergenic Intergenic -118946 ENSMUSG00000088192.1 ENSMUSG00000088192 ENSMUST00000157567 Gm23904 snoRNA Interval_47890 chr13 94187554 94188312 + 0 NA intron (ENSMUSG00000045312.12, intron 1 of 1) protein_coding-intron (ENSMUSG00000045312.12, intron 3 of 3) -47816 ENSMUSG00000087319.1 ENSMUSG00000087319 ENSMUST00000134284 Gm15907 lincRNA Interval_173315 chrX 78230885 78231239 + 0 NA Intergenic Intergenic 14859 ENSMUSG00000079519.2 ENSMUSG00000079519 ENSMUST00000114026 Gm14743 protein_coding Interval_150682 chr7 113287468 113289441 + 0 NA intron (ENSMUSG00000055116.8, intron 9 of 19) protein_coding-intron (ENSMUSG00000055116.8, intron 9 of 19) 6883 ENSMUSG00000109959.1 ENSMUSG00000109959 ENSMUST00000211342 Gm45355 antisense Interval_39948 chr12 100044278 100045598 + 0 NA intron (ENSMUSG00000045404.16, intron 2 of 2) protein_coding-intron (ENSMUSG00000045404.16, intron 2 of 2) 35879 ENSMUSG00000112999.1 ENSMUSG00000112999 ENSMUST00000221663 9530050K03Rik processed_pseudogene Interval_166686 chr9 61909555 61912471 + 0 NA Intergenic Intergenic 3529 ENSMUSG00000007892.8 ENSMUSG00000007892 ENSMUST00000008036 Rplp1 protein_coding Interval_125085 chr5 64351914 64352398 + 0 NA TTS (ENSMUSG00000029174.18) protein_coding-TTS (ENSMUSG00000029174.18) -8358 ENSMUSG00000105730.1 ENSMUSG00000105730 ENSMUST00000196357 Gm43838 lincRNA Interval_11658 chr1 184046472 184047800 + 0 NA intron (ENSMUSG00000039384.8, intron 2 of 3) protein_coding-intron (ENSMUSG00000039384.8, intron 2 of 3) -12835 ENSMUSG00000044854.7 ENSMUSG00000044854 ENSMUST00000050306 1700056E22Rik protein_coding Interval_16542 chr10 63501665 63502630 + 0 NA intron (ENSMUSG00000060843.11, intron 1 of 17) protein_coding-intron (ENSMUSG00000060843.11, intron 1 of 17) -80358 ENSMUSG00000048185.5 ENSMUSG00000048185 ENSMUST00000054760 Gm7075 protein_coding Interval_166031 chr9 55600088 55601020 + 0 NA intron (ENSMUSG00000034007.10, intron 28 of 32) protein_coding-intron (ENSMUSG00000034007.10, intron 26 of 30) -44842 ENSMUSG00000064472.1 ENSMUSG00000064472 ENSMUST00000082538 Gm23407 snRNA Interval_55442 chr14 87347492 87347705 + 0 NA Intergenic Intergenic 1353 ENSMUSG00000088536.1 ENSMUSG00000088536 ENSMUST00000157911 Gm23278 snoRNA Interval_47023 chr13 74430617 74431641 + 0 NA Intergenic Intergenic -9037 ENSMUSG00000113212.1 ENSMUSG00000113212 ENSMUST00000221116 Gm47435 processed_pseudogene Interval_163701 chr9 24518457 24518655 + 0 NA Intergenic Intergenic 15107 ENSMUSG00000111365.1 ENSMUSG00000111365 ENSMUST00000216236 Gm47772 bidirectional_promoter_lncRNA Interval_108196 chr3 122419425 122420894 + 0 NA exon (ENSMUSG00000028121.8, exon 1 of 12) protein_coding-exon (ENSMUSG00000028121.8, exon 1 of 12) 402 ENSMUSG00000028121.8 ENSMUSG00000028121 ENSMUST00000197959 Bcar3 protein_coding Interval_62755 chr15 96649844 96650069 + 0 NA Intergenic Intergenic -7743 ENSMUSG00000023169.15 ENSMUSG00000023169 ENSMUST00000229253 Slc38a1 protein_coding Interval_111339 chr4 19352507 19352767 + 0 NA intron (ENSMUSG00000056494.7, intron 3 of 17) protein_coding-intron (ENSMUSG00000056494.7, intron 3 of 17) 54304 ENSMUSG00000082320.1 ENSMUSG00000082320 ENSMUST00000118921 Gm11877 processed_pseudogene Interval_19404 chr10 98967332 98967852 + 0 NA intron (ENSMUSG00000019943.10, intron 1 of 8) protein_coding-intron (ENSMUSG00000019943.10, intron 1 of 20) -23288 ENSMUSG00000019943.10 ENSMUSG00000019943 ENSMUST00000218419 Atp2b1 protein_coding Interval_36761 chr12 53239251 53239496 + 0 NA Intergenic Intergenic -8784 ENSMUSG00000021010.9 ENSMUSG00000021010 ENSMUST00000223057 Npas3 protein_coding Interval_149577 chr7 99795246 99795981 + 0 NA Intergenic Intergenic -14074 ENSMUSG00000053360.4 ENSMUSG00000053360 ENSMUST00000065741 F730035P03Rik lincRNA Interval_44256 chr13 43094250 43095022 + 0 NA intron (ENSMUSG00000054728.17, intron 7 of 13) protein_coding-intron (ENSMUSG00000054728.17, intron 5 of 11) 31081 ENSMUSG00000087202.1 ENSMUSG00000087202 ENSMUST00000142286 Gm15813 antisense Interval_45257 chr13 53565865 53566669 + 0 NA Intergenic Intergenic -33010 ENSMUSG00000113834.1 ENSMUSG00000113834 ENSMUST00000223156 Gm34022 lincRNA Interval_153376 chr7 144180656 144181349 + 0 NA intron (ENSMUSG00000037541.22, intron 11 of 17) protein_coding-intron (ENSMUSG00000037541.22, intron 2 of 15) -57723 ENSMUSG00000037541.22 ENSMUSG00000037541 ENSMUST00000136979 Shank2 protein_coding Interval_145635 chr7 36603718 36604039 + 0 NA Intergenic Intergenic 35135 ENSMUSG00000101965.1 ENSMUSG00000101965 ENSMUST00000191121 Gm29129 lincRNA Interval_15155 chr10 42942042 42942563 + 0 NA intron (ENSMUSG00000044770.14, intron 1 of 3) protein_coding-intron (ENSMUSG00000044770.14, intron 6 of 8) -53505 ENSMUSG00000111086.1 ENSMUSG00000111086 ENSMUST00000214070 Gm48671 lincRNA Interval_172257 chrX 12047435 12049042 + 0 NA intron (ENSMUSG00000040363.15, intron 7 of 13) protein_coding-intron (ENSMUSG00000040363.15, intron 7 of 13) 63770 ENSMUSG00000081947.2 ENSMUSG00000081947 ENSMUST00000117924 Gm14512 processed_pseudogene Interval_53939 chr14 63522749 63523285 + 0 NA TTS (ENSMUSG00000035078.6) protein_coding-TTS (ENSMUSG00000035078.6) 5142 ENSMUSG00000035078.6 ENSMUSG00000035078 ENSMUST00000058679 Mtmr9 protein_coding Interval_126726 chr5 92334162 92334775 + 0 NA intron (ENSMUSG00000034842.16, intron 2 of 3) protein_coding-intron (ENSMUSG00000034842.16, intron 2 of 9) 2641 ENSMUSG00000034842.16 ENSMUSG00000034842 ENSMUST00000152041 Art3 protein_coding Interval_69948 chr17 3437128 3437429 + 0 NA exon (ENSMUSG00000023800.15, exon 7 of 27) protein_coding-exon (ENSMUSG00000023800.15, exon 7 of 27) 25054 ENSMUSG00000115039.1 ENSMUSG00000115039 ENSMUST00000228135 Gm7043 processed_pseudogene Interval_150519 chr7 111779306 111780432 + 0 NA exon (ENSMUSG00000038296.14, exon 1 of 11) protein_coding-exon (ENSMUSG00000038296.14, exon 1 of 11) 108 ENSMUSG00000038296.14 ENSMUSG00000038296 ENSMUST00000106663 Galnt18 protein_coding Interval_69593 chr16 94495995 94497509 + 0 NA intron (ENSMUSG00000116589.1, intron 1 of 1) antisense-intron (ENSMUSG00000116589.1, intron 1 of 1) 7635 ENSMUSG00000022898.13 ENSMUSG00000022898 ENSMUST00000142988 Vps26c protein_coding Interval_30014 chr11 88695774 88697238 + 0 NA intron (ENSMUSG00000069769.13, intron 5 of 7) protein_coding-intron (ENSMUSG00000069769.13, intron 5 of 13) -22139 ENSMUSG00000087574.1 ENSMUSG00000087574 ENSMUST00000125967 C030037D09Rik lincRNA Interval_14671 chr10 38629650 38630300 + 0 NA Intergenic Intergenic -14494 ENSMUSG00000094521.1 ENSMUSG00000094521 ENSMUST00000177920 Gm22911 snRNA Interval_10399 chr1 170419497 170420513 + 0 NA intron (ENSMUSG00000038473.14, intron 2 of 7) protein_coding-intron (ENSMUSG00000038473.14, intron 2 of 3) -99225 ENSMUSG00000038473.14 ENSMUSG00000038473 ENSMUST00000159665 Nos1ap protein_coding Interval_105430 chr3 86253359 86253608 + 0 NA intron (ENSMUSG00000028080.16, intron 1 of 38) protein_coding-intron (ENSMUSG00000028080.16, intron 2 of 56) 10092 ENSMUSG00000103759.1 ENSMUSG00000103759 ENSMUST00000193963 Gm37288 processed_pseudogene Interval_18056 chr10 81574553 81575804 + 0 NA promoter-TSS (ENSMUSG00000034771.15) protein_coding-promoter-TSS (ENSMUSG00000034771.15) 762 ENSMUSG00000090034.1 ENSMUSG00000090034 ENSMUST00000162771 Gm15917 antisense Interval_133862 chr6 13655790 13658658 + 0 NA intron (ENSMUSG00000042742.7, intron 2 of 3) protein_coding-intron (ENSMUSG00000042742.7, intron 2 of 4) 20714 ENSMUSG00000042742.7 ENSMUSG00000042742 ENSMUST00000203078 Bmt2 protein_coding Interval_42381 chr13 12485653 12485844 + 0 NA intron (ENSMUSG00000095105.2, intron 4 of 5) protein_coding-intron (ENSMUSG00000095105.2, intron 4 of 5) -29225 ENSMUSG00000057554.13 ENSMUSG00000057554 ENSMUST00000152478 Lgals8 protein_coding Interval_68809 chr16 87171560 87171746 + 0 NA Intergenic Intergenic -43214 ENSMUSG00000116979.1 ENSMUSG00000116979 ENSMUST00000232056 Gm32865 lincRNA Interval_38700 chr12 81175114 81176259 + 0 NA intron (ENSMUSG00000021136.13, intron 10 of 11) protein_coding-intron (ENSMUSG00000021136.13, intron 10 of 12) 9535 ENSMUSG00000092673.1 ENSMUSG00000092673 ENSMUST00000174932 Mir3067 miRNA Interval_128992 chr5 116496963 116497858 + 0 NA intron (ENSMUSG00000063919.11, intron 1 of 12) protein_coding-intron (ENSMUSG00000063919.11, intron 1 of 12) 5306 ENSMUSG00000107172.1 ENSMUSG00000107172 ENSMUST00000200924 4933430H06Rik TEC Interval_113481 chr4 55292216 55293018 + 0 NA Intergenic Intergenic 7228 ENSMUSG00000077403.2 ENSMUSG00000077403 ENSMUST00000104215 Gm25419 snoRNA Interval_20417 chr10 117432326 117433451 + 0 NA Intergenic Intergenic 3270 ENSMUSG00000095826.1 ENSMUSG00000095826 ENSMUST00000178437 Gm9002 processed_pseudogene Interval_31030 chr11 97798903 97800635 + 0 NA promoter-TSS (ENSMUSG00000038366.15) protein_coding-promoter-TSS (ENSMUSG00000038366.15) -15479 ENSMUSG00000038366.15 ENSMUSG00000038366 ENSMUST00000107568 Lasp1 protein_coding Interval_160301 chr8 107876586 107876846 + 0 NA intron (ENSMUSG00000110625.1, intron 2 of 2) lincRNA-intron (ENSMUSG00000110625.1, intron 2 of 2) 7031 ENSMUSG00000110625.1 ENSMUSG00000110625 ENSMUST00000212462 5033426E14Rik lincRNA Interval_106450 chr3 96417673 96419315 + 0 NA Intergenic Intergenic -3635 ENSMUSG00000064796.1 ENSMUSG00000064796 ENSMUST00000082862 Terc misc_RNA Interval_85342 chr19 24999052 25000246 + 0 NA exon (ENSMUSG00000052085.7, exon 1 of 48) protein_coding-exon (ENSMUSG00000052085.7, exon 1 of 48) -52964 ENSMUSG00000052085.7 ENSMUSG00000052085 ENSMUST00000236576 Dock8 protein_coding Interval_78492 chr18 13681129 13681456 + 0 NA Intergenic Intergenic -79892 ENSMUSG00000117608.1 ENSMUSG00000117608 ENSMUST00000234112 AC103362.1 lincRNA Interval_38187 chr12 76260632 76262360 + 0 NA intron (ENSMUSG00000021048.7, intron 1 of 26) protein_coding-intron (ENSMUSG00000021048.7, intron 1 of 27) -6162 ENSMUSG00000112274.1 ENSMUSG00000112274 ENSMUST00000220205 Gm47525 bidirectional_promoter_lncRNA Interval_110337 chr3 157064551 157064912 + 0 NA intron (ENSMUSG00000040037.13, intron 3 of 6) protein_coding-intron (ENSMUSG00000040037.13, intron 3 of 6) -7013 ENSMUSG00000105803.1 ENSMUSG00000105803 ENSMUST00000196666 Gm43526 TEC Interval_146475 chr7 46209837 46210965 + 0 NA intron (ENSMUSG00000030838.20, intron 16 of 26) protein_coding-intron (ENSMUSG00000030838.20, intron 16 of 26) 5852 ENSMUSG00000110060.1 ENSMUSG00000110060 ENSMUST00000211426 Gm9860 TEC Interval_135694 chr6 43536668 43537766 + 0 NA intron (ENSMUSG00000029735.17, intron 2 of 6) protein_coding-intron (ENSMUSG00000029735.17, intron 4 of 8) 69238 ENSMUSG00000107709.1 ENSMUSG00000107709 ENSMUST00000203260 9430018G01Rik antisense Interval_148029 chr7 78530068 78530555 + 0 NA intron (ENSMUSG00000059146.12, intron 2 of 3) protein_coding-intron (ENSMUSG00000059146.12, intron 1 of 16) 44921 ENSMUSG00000108390.1 ENSMUSG00000108390 ENSMUST00000206774 Gm39038 sense_intronic Interval_133154 chr5 150222004 150222290 + 0 NA intron (ENSMUSG00000056602.12, intron 1 of 3) protein_coding-intron (ENSMUSG00000056602.12, intron 2 of 4) -21716 ENSMUSG00000107082.1 ENSMUSG00000107082 ENSMUST00000201709 Gm36378 processed_pseudogene Interval_58565 chr15 36167832 36168098 + 0 NA Intergenic Intergenic -1831 ENSMUSG00000064543.1 ENSMUSG00000064543 ENSMUST00000082609 Gm22979 snRNA Interval_61988 chr15 85669854 85672119 + 0 NA intron (ENSMUSG00000116305.1, intron 1 of 6) processed_transcript-intron (ENSMUSG00000116305.1, intron 1 of 6) 17370 ENSMUSG00000116305.1 ENSMUSG00000116305 ENSMUST00000230286 Lncppara processed_transcript Interval_148465 chr7 81493076 81494140 + 0 NA promoter-TSS (ENSMUSG00000062444.15) protein_coding-promoter-TSS (ENSMUSG00000062444.15) 71 ENSMUSG00000062444.15 ENSMUSG00000062444 ENSMUST00000208911 Ap3b2 protein_coding Interval_140054 chr6 113681208 113681877 + 0 NA intron (ENSMUSG00000060477.14, intron 6 of 9) protein_coding-intron (ENSMUSG00000060477.14, intron 9 of 12) -2323 ENSMUSG00000107846.1 ENSMUSG00000107846 ENSMUST00000203466 Gm43963 TEC Interval_127194 chr5 101008423 101008737 + 0 NA Intergenic Intergenic -94873 ENSMUSG00000106255.1 ENSMUSG00000106255 ENSMUST00000199211 Gm36793 lincRNA Interval_173292 chrX 77425855 77427502 + 0 NA Intergenic Intergenic -29908 ENSMUSG00000081622.1 ENSMUSG00000081622 ENSMUST00000119715 Gm5937 processed_pseudogene Interval_110602 chr4 4555966 4556640 + 0 NA Intergenic Intergenic -27584 ENSMUSG00000085155.3 ENSMUSG00000085155 ENSMUST00000136880 Gm11780 processed_pseudogene Interval_43489 chr13 31810691 31812154 + 0 NA exon (ENSMUSG00000050295.4, exon 1 of 1) protein_coding-exon (ENSMUSG00000050295.4, exon 1 of 1) 4789 ENSMUSG00000050295.4 ENSMUSG00000050295 ENSMUST00000062292 Foxc1 protein_coding Interval_21783 chr11 4319528 4319903 + 0 NA Intergenic Intergenic 4540 ENSMUSG00000065627.1 ENSMUSG00000065627 ENSMUST00000083693 Gm24803 snRNA Interval_2981 chr1 51869244 51869718 + 0 NA intron (ENSMUSG00000018417.14, intron 2 of 6) protein_coding-intron (ENSMUSG00000018417.14, intron 2 of 30) 10127 ENSMUSG00000100313.1 ENSMUSG00000100313 ENSMUST00000186817 Gm28323 sense_intronic Interval_52126 chr14 36906160 36906355 + 0 NA promoter-TSS (ENSMUSG00000058690.14) protein_coding-promoter-TSS (ENSMUSG00000058690.14) 2924 ENSMUSG00000058690.14 ENSMUSG00000058690 ENSMUST00000182635 Ccser2 protein_coding Interval_152462 chr7 133121776 133125393 + 0 NA promoter-TSS (ENSMUSG00000030970.16) protein_coding-promoter-TSS (ENSMUSG00000030970.16) -1384 ENSMUSG00000030970.16 ENSMUSG00000030970 ENSMUST00000168238 Ctbp2 protein_coding Interval_73892 chr17 45322565 45323340 + 0 NA Intergenic Intergenic 110589 ENSMUSG00000023932.9 ENSMUSG00000023932 ENSMUST00000232910 Cdc5l protein_coding Interval_46549 chr13 67060321 67061612 + 0 NA promoter-TSS (ENSMUSG00000114516.1) antisense-promoter-TSS (ENSMUSG00000114516.1) 204 ENSMUSG00000090641.2 ENSMUSG00000090641 ENSMUST00000167565 Zfp712 protein_coding Interval_18076 chr10 82127478 82128562 + 0 NA promoter-TSS (ENSMUSG00000078435.5) protein_coding-promoter-TSS (ENSMUSG00000078435.5) 7 ENSMUSG00000078435.5 ENSMUSG00000078435 ENSMUST00000105314 AU041133 protein_coding Interval_112475 chr4 41482170 41482492 + 0 NA Intergenic Intergenic 17180 ENSMUSG00000028443.6 ENSMUSG00000028443 ENSMUST00000030154 Nudt2 protein_coding Interval_163162 chr9 16246581 16247063 + 0 NA exon (ENSMUSG00000074505.6, exon 2 of 25) protein_coding-exon (ENSMUSG00000074505.6, exon 2 of 25) 188573 ENSMUSG00000111652.1 ENSMUSG00000111652 ENSMUST00000215220 Gm48726 TEC Interval_172751 chrX 48293171 48294127 + 0 NA Intergenic Intergenic -5930 ENSMUSG00000089443.1 ENSMUSG00000089443 ENSMUST00000158818 Gm22528 snRNA Interval_157273 chr8 68864968 68865593 + 0 NA Intergenic Intergenic -15275 ENSMUSG00000015568.16 ENSMUSG00000015568 ENSMUST00000169749 Lpl protein_coding Interval_4921 chr1 82634552 82634959 + 0 NA promoter-TSS (ENSMUSG00000065055.1) rRNA-promoter-TSS (ENSMUSG00000065055.1) -258 ENSMUSG00000065055.1 ENSMUSG00000065055 ENSMUST00000083121 n-R5s213 rRNA Interval_43858 chr13 37638305 37638532 + 0 NA intron (ENSMUSG00000114355.1, intron 6 of 6) lincRNA-intron (ENSMUSG00000114355.1, intron 6 of 6) 9818 ENSMUSG00000114355.1 ENSMUSG00000114355 ENSMUST00000225532 Gm40916 lincRNA Interval_56865 chr14 122558139 122558942 + 0 NA intron (ENSMUSG00000041650.15, intron 2 of 4) protein_coding-intron (ENSMUSG00000041650.15, intron 2 of 23) -24144 ENSMUSG00000041650.15 ENSMUSG00000041650 ENSMUST00000138836 Pcca protein_coding Interval_141069 chr6 124795381 124798359 + 0 NA Intergenic Intergenic -12015 ENSMUSG00000038451.13 ENSMUSG00000038451 ENSMUST00000112473 Spsb2 protein_coding Interval_129345 chr5 119350526 119350932 + 0 NA Intergenic Intergenic 53484 ENSMUSG00000084548.1 ENSMUSG00000084548 ENSMUST00000122599 n-R5s175 rRNA Interval_122064 chr5 15843010 15843276 + 0 NA Intergenic Intergenic -27104 ENSMUSG00000105916.1 ENSMUSG00000105916 ENSMUST00000200477 Gm42453 processed_pseudogene Interval_147850 chr7 74254883 74255191 + 0 NA Intergenic Intergenic 19479 ENSMUSG00000098303.1 ENSMUSG00000098303 ENSMUST00000184860 Gm27459 miRNA Interval_18317 chr10 84850033 84851474 + 0 NA intron (ENSMUSG00000020037.15, intron 5 of 14) protein_coding-intron (ENSMUSG00000020037.15, intron 4 of 9) -39570 ENSMUSG00000089451.1 ENSMUSG00000089451 ENSMUST00000158826 Gm24226 snRNA Interval_35390 chr12 21265622 21266850 + 0 NA intron (ENSMUSG00000052632.16, intron 27 of 27) protein_coding-intron (ENSMUSG00000052632.16, intron 26 of 26) -10284 ENSMUSG00000092373.1 ENSMUSG00000092373 ENSMUST00000173157 Gm20535 processed_transcript Interval_59895 chr15 61124352 61124601 + 0 NA Intergenic Intergenic -33393 ENSMUSG00000116498.1 ENSMUSG00000116498 ENSMUST00000229334 Gm38563 lincRNA Interval_35212 chr12 18236270 18236514 + 0 NA intron (ENSMUSG00000113956.1, intron 1 of 2) processed_pseudogene-intron (ENSMUSG00000113956.1, intron 1 of 2) 2682 ENSMUSG00000113956.1 ENSMUSG00000113956 ENSMUST00000221258 Gm19368 processed_pseudogene Interval_107424 chr3 107550538 107551039 + 0 NA Intergenic Intergenic 4285 ENSMUSG00000055891.7 ENSMUSG00000055891 ENSMUST00000052853 Ubl4b protein_coding Interval_144949 chr7 29063478 29064076 + 0 NA intron (ENSMUSG00000030592.18, intron 64 of 108) protein_coding-intron (ENSMUSG00000030592.18, intron 63 of 105) -7860 ENSMUSG00000097079.2 ENSMUSG00000097079 ENSMUST00000209109 Gm26604 antisense Interval_134638 chr6 30091536 30092381 + 0 NA TTS (ENSMUSG00000058440.14) protein_coding-TTS (ENSMUSG00000058440.14) 2063 ENSMUSG00000058440.14 ENSMUSG00000058440 ENSMUST00000132866 Nrf1 protein_coding Interval_20897 chr10 121833363 121833767 + 0 NA intron (ENSMUSG00000020121.15, intron 10 of 21) protein_coding-intron (ENSMUSG00000020121.15, intron 10 of 21) -1507 ENSMUSG00000112596.1 ENSMUSG00000112596 ENSMUST00000218664 Gm48804 TEC Interval_50982 chr14 21480529 21481889 + 0 NA promoter-TSS (ENSMUSG00000021767.19) protein_coding-promoter-TSS (ENSMUSG00000021767.19) -7849 ENSMUSG00000114875.1 ENSMUSG00000114875 ENSMUST00000225719 Gm30363 processed_transcript Interval_124096 chr5 38241725 38243106 + 0 NA Intergenic Intergenic -17956 ENSMUSG00000067365.10 ENSMUSG00000067365 ENSMUST00000142277 Tmem128 protein_coding Interval_93207 chr2 71167082 71167734 + 0 NA Intergenic Intergenic -44596 ENSMUSG00000027012.15 ENSMUSG00000027012 ENSMUST00000138613 Dync1i2 protein_coding Interval_149644 chr7 100317762 100318195 + 0 NA intron (ENSMUSG00000051048.17, intron 7 of 8) protein_coding-intron (ENSMUSG00000051048.17, intron 11 of 12) 16397 ENSMUSG00000051048.17 ENSMUSG00000051048 ENSMUST00000208565 P4ha3 protein_coding Interval_128164 chr5 111416567 111418006 + 0 NA promoter-TSS (ENSMUSG00000070576.4) protein_coding-promoter-TSS (ENSMUSG00000070576.4) -76 ENSMUSG00000070576.4 ENSMUSG00000070576 ENSMUST00000094463 Mn1 protein_coding Interval_139262 chr6 97658604 97659673 + 0 NA Intergenic Intergenic -71301 ENSMUSG00000094510.1 ENSMUSG00000094510 ENSMUST00000180099 Gm24565 snRNA Interval_69165 chr16 91079862 91080628 + 0 NA intron (ENSMUSG00000039851.11, intron 1 of 1) protein_coding-intron (ENSMUSG00000039851.11, intron 1 of 1) 14877 ENSMUSG00000039851.11 ENSMUSG00000039851 ENSMUST00000146047 4932438H23Rik protein_coding Interval_45978 chr13 59741383 59741885 + 0 NA TTS (ENSMUSG00000051054.4) protein_coding-TTS (ENSMUSG00000051054.4) 3283 ENSMUSG00000051054.4 ENSMUSG00000051054 ENSMUST00000178508 1700014D04Rik protein_coding Interval_36457 chr12 45099471 45099859 + 0 NA intron (ENSMUSG00000112112.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000112112.1, intron 1 of 1) 5653 ENSMUSG00000112112.1 ENSMUSG00000112112 ENSMUST00000219735 Gm48508 lincRNA Interval_696 chr1 9992453 9992719 + 0 NA TTS (ENSMUSG00000087199.1) antisense-TTS (ENSMUSG00000087199.1) 10199 ENSMUSG00000087199.1 ENSMUSG00000087199 ENSMUST00000134692 Gm15818 antisense Interval_130818 chr5 130924304 130925050 + 0 NA intron (ENSMUSG00000034040.16, intron 6 of 10) protein_coding-intron (ENSMUSG00000034040.16, intron 6 of 10) -26064 ENSMUSG00000107207.1 ENSMUSG00000107207 ENSMUST00000201486 Gm42897 TEC Interval_106266 chr3 95024466 95025649 + 0 NA Intergenic Intergenic 8808 ENSMUSG00000085956.1 ENSMUSG00000085956 ENSMUST00000151207 4930481B07Rik processed_transcript Interval_3938 chr1 64954632 64955468 + 0 NA intron (ENSMUSG00000051344.13, intron 1 of 1) protein_coding-intron (ENSMUSG00000051344.13, intron 1 of 7) 20648 ENSMUSG00000097264.1 ENSMUSG00000097264 ENSMUST00000181350 Rpl31-ps24 processed_pseudogene Interval_104318 chr3 63316923 63318007 + 0 NA intron (ENSMUSG00000027820.12, intron 3 of 5) protein_coding-intron (ENSMUSG00000027820.12, intron 3 of 22) 22199 ENSMUSG00000027820.12 ENSMUSG00000027820 ENSMUST00000193805 Mme protein_coding Interval_149852 chr7 102000508 102001681 + 0 NA promoter-TSS (ENSMUSG00000066306.13) protein_coding-promoter-TSS (ENSMUSG00000066306.13) 17065 ENSMUSG00000070427.4 ENSMUSG00000070427 ENSMUST00000211502 Il18bp protein_coding Interval_64502 chr16 12784920 12785143 + 0 NA intron (ENSMUSG00000116520.1, intron 2 of 11) lincRNA-intron (ENSMUSG00000116520.1, intron 2 of 11) -15548 ENSMUSG00000101565.2 ENSMUSG00000101565 ENSMUST00000190074 1700003L19Rik lincRNA Interval_136178 chr6 51774678 51775727 + 0 NA Intergenic Intergenic -64121 ENSMUSG00000108145.1 ENSMUSG00000108145 ENSMUST00000203781 Gm38811 lincRNA Interval_37815 chr12 72223220 72224107 + 0 NA intron (ENSMUSG00000021087.18, intron 3 of 8) protein_coding-intron (ENSMUSG00000021087.18, intron 1 of 6) 12885 ENSMUSG00000021087.18 ENSMUSG00000021087 ENSMUST00000221756 Rtn1 protein_coding Interval_156300 chr8 47218500 47218728 + 0 NA intron (ENSMUSG00000038143.16, intron 2 of 5) protein_coding-intron (ENSMUSG00000038143.16, intron 1 of 3) 8552 ENSMUSG00000109606.1 ENSMUSG00000109606 ENSMUST00000211539 Gm45537 TEC Interval_61983 chr15 85634398 85635199 + 0 NA Intergenic Intergenic -11285 ENSMUSG00000116004.1 ENSMUSG00000116004 ENSMUST00000230234 Gm49539 lincRNA Interval_37920 chr12 73059546 73059950 + 0 NA Intergenic Intergenic -16933 ENSMUSG00000051367.8 ENSMUSG00000051367 ENSMUST00000175677 Six1 protein_coding Interval_91590 chr2 44189830 44190076 + 0 NA intron (ENSMUSG00000049744.15, intron 11 of 14) protein_coding-intron (ENSMUSG00000049744.15, intron 11 of 13) -124629 ENSMUSG00000085089.1 ENSMUSG00000085089 ENSMUST00000139948 Arhgap15os antisense Interval_56947 chr14 123928100 123928358 + 0 NA intron (ENSMUSG00000032925.16, intron 7 of 10) protein_coding-intron (ENSMUSG00000032925.16, intron 7 of 10) -5489 ENSMUSG00000077481.1 ENSMUSG00000077481 ENSMUST00000104293 Gm25272 snoRNA Interval_162838 chr9 10186183 10186382 + 0 NA intron (ENSMUSG00000039488.15, intron 3 of 24) protein_coding-intron (ENSMUSG00000039488.15, intron 1 of 22) 104305 ENSMUSG00000093959.1 ENSMUSG00000093959 ENSMUST00000178287 Gm24496 miRNA Interval_68123 chr16 65466132 65466889 + 0 NA Intergenic Intergenic 34373 ENSMUSG00000095094.1 ENSMUSG00000095094 ENSMUST00000102245 Gm23659 miRNA Interval_116488 chr4 114605117 114605612 + 0 NA intron (ENSMUSG00000070867.4, intron 6 of 6) protein_coding-intron (ENSMUSG00000070867.4, intron 6 of 6) 67976 ENSMUSG00000100998.1 ENSMUSG00000100998 ENSMUST00000189251 Gm28864 lincRNA Interval_99291 chr2 158714627 158715166 + 0 NA intron (ENSMUSG00000037754.13, intron 1 of 8) protein_coding-intron (ENSMUSG00000037754.13, intron 2 of 10) 18761 ENSMUSG00000037754.13 ENSMUSG00000037754 ENSMUST00000145073 Ppp1r16b protein_coding Interval_149205 chr7 96272148 96273027 + 0 NA intron (ENSMUSG00000048078.16, intron 1 of 32) protein_coding-intron (ENSMUSG00000048078.16, intron 1 of 32) 23163 ENSMUSG00000076143.1 ENSMUSG00000076143 ENSMUST00000102189 Mir708 miRNA Interval_43399 chr13 30074261 30075041 + 0 NA Intergenic Intergenic 15974 ENSMUSG00000085188.1 ENSMUSG00000085188 ENSMUST00000139576 Gm11368 lincRNA Interval_80892 chr18 49966812 49967372 + 0 NA Intergenic Intergenic 44379 ENSMUSG00000037416.13 ENSMUSG00000037416 ENSMUST00000181042 Dmxl1 protein_coding Interval_56966 chr14 124329341 124330226 + 0 NA intron (ENSMUSG00000025551.13, intron 1 of 4) protein_coding-intron (ENSMUSG00000025551.13, intron 1 of 4) -68908 ENSMUSG00000115472.1 ENSMUSG00000115472 ENSMUST00000228023 Gm49070 processed_pseudogene Interval_117101 chr4 119532760 119533025 + 0 NA TTS (ENSMUSG00000087385.8) protein_coding-TTS (ENSMUSG00000087385.8) -4112 ENSMUSG00000032998.16 ENSMUSG00000032998 ENSMUST00000133097 Foxj3 protein_coding Interval_110859 chr4 9081886 9082174 + 0 NA Intergenic Intergenic -127973 ENSMUSG00000075958.1 ENSMUSG00000075958 ENSMUST00000082782 Gm23423 snRNA Interval_84546 chr19 12591916 12592150 + 0 NA intron (ENSMUSG00000086213.2, intron 1 of 4) processed_transcript-intron (ENSMUSG00000086213.2, intron 1 of 1) 4486 ENSMUSG00000086213.2 ENSMUSG00000086213 ENSMUST00000136697 A330040F15Rik processed_transcript Interval_101750 chr3 9364603 9365963 + 0 NA Intergenic Intergenic -36892 ENSMUSG00000088229.1 ENSMUSG00000088229 ENSMUST00000157604 Gm22604 misc_RNA Interval_64621 chr16 13714720 13716230 + 0 NA TTS (ENSMUSG00000022683.13) protein_coding-TTS (ENSMUSG00000022683.13) -14361 ENSMUSG00000086550.2 ENSMUSG00000086550 ENSMUST00000141172 Pla2g10os antisense Interval_159793 chr8 103658021 103658237 + 0 NA intron (ENSMUSG00000110336.1, intron 3 of 4) lincRNA-intron (ENSMUSG00000110336.1, intron 3 of 4) 54330 ENSMUSG00000110336.1 ENSMUSG00000110336 ENSMUST00000211119 4933400L20Rik lincRNA Interval_71578 chr17 24653936 24654500 + 0 NA Intergenic Intergenic -4225 ENSMUSG00000002504.15 ENSMUSG00000002504 ENSMUST00000235042 Slc9a3r2 protein_coding Interval_53583 chr14 59591872 59592416 + 0 NA TTS (ENSMUSG00000021982.14) protein_coding-TTS (ENSMUSG00000021982.14) 5795 ENSMUSG00000021982.14 ENSMUSG00000021982 ENSMUST00000223842 Cdadc1 protein_coding Interval_107351 chr3 106448508 106449149 + 0 NA Intergenic Intergenic -29455 ENSMUSG00000104350.1 ENSMUSG00000104350 ENSMUST00000191737 Gm38244 TEC Interval_155575 chr8 34732284 34733484 + 0 NA Intergenic Intergenic -73515 ENSMUSG00000109846.1 ENSMUSG00000109846 ENSMUST00000210130 Gm45627 lincRNA Interval_63363 chr15 100618245 100618888 + 0 NA TTS (ENSMUSG00000000346.9) protein_coding-TTS (ENSMUSG00000000346.9) 2632 ENSMUSG00000000346.9 ENSMUSG00000000346 ENSMUST00000230384 Dazap2 protein_coding Interval_84435 chr19 10894678 10896082 + 0 NA promoter-TSS (ENSMUSG00000024735.13) protein_coding-promoter-TSS (ENSMUSG00000024735.13) -4902 ENSMUSG00000024735.13 ENSMUSG00000024735 ENSMUST00000191552 Prpf19 protein_coding Interval_3360 chr1 57412225 57412411 + 0 NA TTS (ENSMUSG00000025971.6) protein_coding-TTS (ENSMUSG00000025971.6) 5559 ENSMUSG00000025971.6 ENSMUSG00000025971 ENSMUST00000185709 Maip1 protein_coding Interval_148108 chr7 79278657 79279818 + 0 NA exon (ENSMUSG00000108521.1, exon 1 of 1) TEC-exon (ENSMUSG00000108521.1, exon 1 of 1) 1470 ENSMUSG00000108521.1 ENSMUSG00000108521 ENSMUST00000205859 Gm44639 TEC Interval_21333 chr10 128038864 128039901 + 0 NA exon (ENSMUSG00000061315.14, exon 3 of 9) protein_coding-exon (ENSMUSG00000061315.14, exon 3 of 9) 3747 ENSMUSG00000061315.14 ENSMUSG00000061315 ENSMUST00000092048 Naca protein_coding Interval_83065 chr18 80985830 80987986 + 0 NA promoter-TSS (ENSMUSG00000024565.10) protein_coding-promoter-TSS (ENSMUSG00000024565.10) -372 ENSMUSG00000024565.10 ENSMUSG00000024565 ENSMUST00000235746 Sall3 protein_coding Interval_140297 chr6 116228743 116229481 + 0 NA intron (ENSMUSG00000024104.11, intron 14 of 24) protein_coding-intron (ENSMUSG00000024104.11, intron 15 of 30) -21119 ENSMUSG00000108030.1 ENSMUSG00000108030 ENSMUST00000203332 9530062K07Rik bidirectional_promoter_lncRNA Interval_3972 chr1 65185941 65187295 + 0 NA promoter-TSS (ENSMUSG00000025949.16) protein_coding-promoter-TSS (ENSMUSG00000025949.16) -86 ENSMUSG00000025949.16 ENSMUSG00000025949 ENSMUST00000190847 Pikfyve protein_coding Interval_96929 chr2 129602442 129602648 + 0 NA intron (ENSMUSG00000037902.18, intron 1 of 1) protein_coding-intron (ENSMUSG00000037902.18, intron 1 of 7) 9706 ENSMUSG00000037902.18 ENSMUSG00000037902 ENSMUST00000162764 Sirpa protein_coding Interval_41586 chr12 116576624 116578198 + 0 NA intron (ENSMUSG00000056553.14, intron 1 of 4) protein_coding-intron (ENSMUSG00000056553.14, intron 1 of 22) -19842 ENSMUSG00000101814.1 ENSMUSG00000101814 ENSMUST00000186869 Gm17807 processed_pseudogene Interval_49705 chr13 114120372 114120902 + 0 NA promoter-TSS (ENSMUSG00000114696.1) TEC-promoter-TSS (ENSMUSG00000114696.1) -221 ENSMUSG00000114696.1 ENSMUSG00000114696 ENSMUST00000223997 Gm47479 TEC Interval_69076 chr16 90440729 90441119 + 0 NA intron (ENSMUSG00000053414.8, intron 2 of 10) protein_coding-intron (ENSMUSG00000053414.8, intron 2 of 10) 40380 ENSMUSG00000053414.8 ENSMUSG00000053414 ENSMUST00000231603 Hunk protein_coding Interval_24333 chr11 32454402 32456003 + 0 NA promoter-TSS (ENSMUSG00000044949.4) protein_coding-promoter-TSS (ENSMUSG00000044949.4) -168 ENSMUSG00000044949.4 ENSMUSG00000044949 ENSMUST00000051053 Ubtd2 protein_coding Interval_54361 chr14 67925990 67926291 + 0 NA intron (ENSMUSG00000044447.5, intron 1 of 17) protein_coding-intron (ENSMUSG00000044447.5, intron 1 of 51) -66395 ENSMUSG00000098866.1 ENSMUSG00000098866 ENSMUST00000183732 Mir6539 miRNA Interval_11653 chr1 184004507 184005058 + 0 NA Intergenic Intergenic -8520 ENSMUSG00000039384.8 ENSMUSG00000039384 ENSMUST00000048655 Dusp10 protein_coding Interval_95228 chr2 105016562 105018219 + 0 NA promoter-TSS (ENSMUSG00000027170.12) protein_coding-promoter-TSS (ENSMUSG00000027170.12) -10567 ENSMUSG00000027170.12 ENSMUSG00000027170 ENSMUST00000111110 Eif3m protein_coding Interval_138332 chr6 87311800 87312388 + 0 NA intron (ENSMUSG00000033420.12, intron 2 of 16) protein_coding-intron (ENSMUSG00000033420.12, intron 2 of 17) 10245 ENSMUSG00000107780.1 ENSMUSG00000107780 ENSMUST00000203393 9530013L04Rik TEC Interval_96415 chr2 122312613 122314361 + 0 NA exon (ENSMUSG00000027224.14, exon 1 of 6) protein_coding-exon (ENSMUSG00000027224.14, exon 1 of 6) -2185 ENSMUSG00000033268.8 ENSMUSG00000033268 ENSMUST00000099461 Duox1 protein_coding Interval_22457 chr11 10429688 10430125 + 0 NA Intergenic Intergenic -52824 ENSMUSG00000084045.1 ENSMUSG00000084045 ENSMUST00000118697 Gm11997 processed_pseudogene Interval_3671 chr1 60558747 60559150 + 0 NA intron (ENSMUSG00000026014.15, intron 1 of 3) protein_coding-intron (ENSMUSG00000026014.15, intron 1 of 15) 21928 ENSMUSG00000084400.1 ENSMUSG00000084400 ENSMUST00000117433 Gm11576 processed_pseudogene Interval_2604 chr1 41891012 41891945 + 0 NA intron (ENSMUSG00000100832.1, intron 1 of 5) lincRNA-intron (ENSMUSG00000100832.1, intron 1 of 5) -26874 ENSMUSG00000100832.1 ENSMUSG00000100832 ENSMUST00000187227 Gm29260 lincRNA Interval_90899 chr2 33337613 33337891 + 0 NA intron (ENSMUSG00000038831.16, intron 2 of 17) protein_coding-intron (ENSMUSG00000038831.16, intron 2 of 16) 14581 ENSMUSG00000082844.1 ENSMUSG00000082844 ENSMUST00000120467 Gm13537 processed_pseudogene Interval_101001 chr2 174109867 174111290 + 0 NA promoter-TSS (ENSMUSG00000039263.16) protein_coding-promoter-TSS (ENSMUSG00000039263.16) -602 ENSMUSG00000039263.16 ENSMUSG00000039263 ENSMUST00000136449 Npepl1 protein_coding Interval_163555 chr9 22076078 22076891 + 0 NA exon (ENSMUSG00000066839.12, exon 4 of 9) protein_coding-exon (ENSMUSG00000066839.12, exon 4 of 9) -5208 ENSMUSG00000038895.16 ENSMUSG00000038895 ENSMUST00000216244 Zfp653 protein_coding Interval_38240 chr12 76588507 76589169 + 0 NA intron (ENSMUSG00000021061.15, intron 32 of 35) protein_coding-intron (ENSMUSG00000021061.15, intron 32 of 35) -4752 ENSMUSG00000021061.15 ENSMUSG00000021061 ENSMUST00000166101 Sptb protein_coding Interval_50579 chr14 15960632 15960859 + 0 NA Intergenic Intergenic -49430 ENSMUSG00000114794.1 ENSMUSG00000114794 ENSMUST00000225517 Gm47782 lincRNA Interval_81111 chr18 53954172 53954626 + 0 NA TTS (ENSMUSG00000073563.3) protein_coding-TTS (ENSMUSG00000073563.3) -29922 ENSMUSG00000069376.2 ENSMUSG00000069376 ENSMUST00000091897 Gm5507 processed_pseudogene Interval_95836 chr2 117063891 117064104 + 0 NA Intergenic Intergenic 8431 ENSMUSG00000074930.5 ENSMUSG00000074930 ENSMUST00000122360 Gm13981 processed_pseudogene Interval_158025 chr8 78120725 78121184 + 0 NA Intergenic Intergenic 12994 ENSMUSG00000109948.1 ENSMUSG00000109948 ENSMUST00000210236 Gm45288 processed_pseudogene Interval_75295 chr17 65743829 65744137 + 0 NA intron (ENSMUSG00000056515.9, intron 1 of 2) protein_coding-intron (ENSMUSG00000056515.9, intron 1 of 6) 28657 ENSMUSG00000056515.9 ENSMUSG00000056515 ENSMUST00000233258 Rab31 protein_coding Interval_94019 chr2 80745951 80746315 + 0 NA Intergenic Intergenic 38544 ENSMUSG00000077404.1 ENSMUSG00000077404 ENSMUST00000104216 Gm25420 snoRNA Interval_46874 chr13 72939054 72939485 + 0 NA Intergenic Intergenic -122506 ENSMUSG00000113082.1 ENSMUSG00000113082 ENSMUST00000223149 D730050B12Rik lincRNA Interval_141192 chr6 125496580 125496874 + 0 NA TTS (ENSMUSG00000101162.2) processed_transcript-TTS (ENSMUSG00000101162.2) 2299 ENSMUSG00000101162.2 ENSMUSG00000101162 ENSMUST00000185268 Gm26728 processed_transcript Interval_20562 chr10 119049527 119050555 + 0 NA intron (ENSMUSG00000112778.1, intron 2 of 3) lincRNA-intron (ENSMUSG00000112778.1, intron 2 of 3) 458 ENSMUSG00000112778.1 ENSMUSG00000112778 ENSMUST00000220074 Gm33677 lincRNA Interval_136061 chr6 50391303 50392521 + 0 NA intron (ENSMUSG00000029822.15, intron 1 of 5) protein_coding-intron (ENSMUSG00000029822.15, intron 2 of 21) -39955 ENSMUSG00000029822.15 ENSMUSG00000029822 ENSMUST00000154333 Osbpl3 protein_coding Interval_11446 chr1 181966393 181966671 + 0 NA intron (ENSMUSG00000022995.16, intron 1 of 13) protein_coding-intron (ENSMUSG00000022995.16, intron 1 of 14) 3391 ENSMUSG00000103317.1 ENSMUSG00000103317 ENSMUST00000191884 Gm38359 TEC Interval_57471 chr15 11565564 11565777 + 0 NA Intergenic Intergenic -65059 ENSMUSG00000115804.1 ENSMUSG00000115804 ENSMUST00000228129 Gm49107 lincRNA Interval_101028 chr2 174320424 174320634 + 0 NA intron (ENSMUSG00000027523.20, intron 2 of 12) protein_coding-intron (ENSMUSG00000027523.20, intron 1 of 11) -23783 ENSMUSG00000027523.20 ENSMUSG00000027523 ENSMUST00000129534 Gnas protein_coding Interval_16332 chr10 62286291 62286546 + 0 NA exon (ENSMUSG00000037012.18, exon 12 of 20) protein_coding-exon (ENSMUSG00000037012.18, exon 12 of 20) 3911 ENSMUSG00000037012.18 ENSMUSG00000037012 ENSMUST00000149534 Hk1 protein_coding Interval_35540 chr12 24623098 24624183 + 0 NA Intergenic Intergenic 15370 ENSMUSG00000066553.5 ENSMUSG00000066553 ENSMUST00000140065 Gm6969 processed_pseudogene Interval_140831 chr6 122019363 122020237 + 0 NA intron (ENSMUSG00000030131.8, intron 4 of 34) protein_coding-intron (ENSMUSG00000030131.8, intron 4 of 34) 13039 ENSMUSG00000030131.8 ENSMUSG00000030131 ENSMUST00000081777 Mug2 protein_coding Interval_102106 chr3 17649097 17649626 + 0 NA Intergenic Intergenic -21327 ENSMUSG00000104242.1 ENSMUSG00000104242 ENSMUST00000195444 Gm38154 processed_pseudogene Interval_145226 chr7 30785453 30786537 + 0 NA Intergenic Intergenic -1910 ENSMUSG00000074199.7 ENSMUSG00000074199 ENSMUST00000188036 Krtdap protein_coding Interval_170436 chr9 107961089 107962293 + 0 NA promoter-TSS (ENSMUSG00000032586.9) protein_coding-promoter-TSS (ENSMUSG00000032586.9) -542 ENSMUSG00000032586.9 ENSMUSG00000032586 ENSMUST00000195803 Traip protein_coding Interval_136793 chr6 60393036 60393553 + 0 NA intron (ENSMUSG00000046764.8, intron 1 of 1) processed_transcript-intron (ENSMUSG00000046764.8, intron 1 of 1) 10413 ENSMUSG00000046764.8 ENSMUSG00000046764 ENSMUST00000203367 A530053G22Rik processed_transcript Interval_79669 chr18 34382394 34383651 + 0 NA Intergenic Intergenic -10524 ENSMUSG00000005873.6 ENSMUSG00000005873 ENSMUST00000235153 Reep5 protein_coding Interval_114646 chr4 83433044 83433235 + 0 NA intron (ENSMUSG00000028483.13, intron 3 of 11) protein_coding-intron (ENSMUSG00000028483.13, intron 3 of 8) -20815 ENSMUSG00000028483.13 ENSMUSG00000028483 ENSMUST00000130676 Snapc3 protein_coding Interval_64298 chr16 10320136 10320397 + 0 NA Intergenic Intergenic -6395 ENSMUSG00000022505.9 ENSMUSG00000022505 ENSMUST00000230141 Emp2 protein_coding Interval_90871 chr2 33101620 33101961 + 0 NA intron (ENSMUSG00000038860.15, intron 2 of 29) protein_coding-intron (ENSMUSG00000038860.15, intron 2 of 4) 56380 ENSMUSG00000038831.16 ENSMUSG00000038831 ENSMUST00000113164 Ralgps1 protein_coding Interval_66717 chr16 36564968 36565455 + 0 NA Intergenic Intergenic -3070 ENSMUSG00000051980.13 ENSMUSG00000051980 ENSMUST00000174750 Casr protein_coding Interval_87005 chr19 45486547 45487252 + 0 NA intron (ENSMUSG00000025217.15, intron 5 of 13) protein_coding-intron (ENSMUSG00000025217.15, intron 4 of 14) -35704 ENSMUSG00000057605.4 ENSMUSG00000057605 ENSMUST00000077435 Gm6807 processed_pseudogene Interval_114401 chr4 75240044 75240356 + 0 NA Intergenic Intergenic 38105 ENSMUSG00000028398.8 ENSMUSG00000028398 ENSMUST00000030103 Dmac1 protein_coding Interval_93375 chr2 72492870 72493336 + 0 NA Intergenic Intergenic 16850 ENSMUSG00000055612.15 ENSMUSG00000055612 ENSMUST00000137880 Cdca7 protein_coding Interval_5369 chr1 88007791 88009179 + 0 NA promoter-TSS (ENSMUSG00000005501.14) protein_coding-promoter-TSS (ENSMUSG00000005501.14) -7439 ENSMUSG00000095942.1 ENSMUSG00000095942 ENSMUST00000178574 Gm25198 miRNA Interval_43135 chr13 24564914 24566381 + 0 NA intron (ENSMUSG00000036006.20, intron 1 of 13) protein_coding-intron (ENSMUSG00000036006.20, intron 1 of 13) 39120 ENSMUSG00000085603.3 ENSMUSG00000085603 ENSMUST00000127863 Gm11346 transcribed_processed_pseudogene Interval_37535 chr12 69652578 69652936 + 0 NA intron (ENSMUSG00000034801.13, intron 2 of 22) protein_coding-intron (ENSMUSG00000034801.13, intron 2 of 22) -35638 ENSMUSG00000034801.13 ENSMUSG00000034801 ENSMUST00000183306 Sos2 protein_coding Interval_125290 chr5 65980897 65982143 + 0 NA exon (ENSMUSG00000054598.13, exon 2 of 2) protein_coding-exon (ENSMUSG00000054598.13, exon 2 of 2) -7525 ENSMUSG00000093070.1 ENSMUSG00000093070 ENSMUST00000175329 Gm25952 miRNA Interval_130395 chr5 127279231 127280601 + 0 NA intron (ENSMUSG00000087104.7, intron 1 of 3) protein_coding-intron (ENSMUSG00000034324.16, intron 1 of 8) 1678 ENSMUSG00000087104.7 ENSMUSG00000087104 ENSMUST00000154361 Tmem132cos antisense Interval_70360 chr17 8985164 8986058 + 0 NA exon (ENSMUSG00000023868.17, exon 22 of 22) protein_coding-exon (ENSMUSG00000023868.17, exon 22 of 22) -2731 ENSMUSG00000023873.13 ENSMUSG00000023873 ENSMUST00000136954 1700010I14Rik protein_coding Interval_173151 chrX 73593276 73595512 + 0 NA Intergenic Intergenic -10271 ENSMUSG00000118463.1 ENSMUSG00000118463 ENSMUST00000238737 Gm9730 unitary_pseudogene Interval_110180 chr3 153990657 153990847 + 0 NA intron (ENSMUSG00000028360.10, intron 1 of 21) protein_coding-intron (ENSMUSG00000028360.10, intron 1 of 21) -52943 ENSMUSG00000062908.12 ENSMUSG00000062908 ENSMUST00000135724 Acadm protein_coding Interval_20683 chr10 120216764 120217645 + 0 NA intron (ENSMUSG00000020225.10, intron 2 of 5) protein_coding-intron (ENSMUSG00000020225.10, intron 2 of 6) -9898 ENSMUSG00000020224.15 ENSMUSG00000020224 ENSMUST00000130198 Llph protein_coding Interval_34350 chr12 3548610 3548815 + 0 NA Intergenic Intergenic -23758 ENSMUSG00000071454.13 ENSMUSG00000071454 ENSMUST00000174293 Dtnb protein_coding Interval_88908 chr2 12492235 12492823 + 0 NA Intergenic Intergenic -70503 ENSMUSG00000083547.2 ENSMUSG00000083547 ENSMUST00000117101 Gm13321 processed_pseudogene Interval_123784 chr5 35483365 35483893 + 0 NA Intergenic Intergenic 41942 ENSMUSG00000036596.6 ENSMUSG00000036596 ENSMUST00000132959 Cpz protein_coding Interval_92082 chr2 53072236 53072521 + 0 NA intron (ENSMUSG00000036053.17, intron 8 of 26) protein_coding-intron (ENSMUSG00000036053.17, intron 8 of 26) 118809 ENSMUSG00000061136.16 ENSMUSG00000061136 ENSMUST00000132031 Prpf40a protein_coding Interval_23945 chr11 28669324 28669524 + 0 NA Intergenic Intergenic -12140 ENSMUSG00000084966.1 ENSMUSG00000084966 ENSMUST00000146554 2810471M01Rik lincRNA Interval_82160 chr18 68179049 68179330 + 0 NA intron (ENSMUSG00000024544.9, intron 3 of 5) protein_coding-intron (ENSMUSG00000024544.9, intron 3 of 5) -10222 ENSMUSG00000118306.1 ENSMUSG00000118306 ENSMUST00000237336 Gm18149 processed_pseudogene Interval_149144 chr7 94901922 94902331 + 0 NA Intergenic Intergenic -269738 ENSMUSG00000084636.1 ENSMUSG00000084636 ENSMUST00000122687 Gm23884 misc_RNA Interval_154392 chr8 15441663 15442234 + 0 NA Intergenic Intergenic 4082 ENSMUSG00000110288.1 ENSMUSG00000110288 ENSMUST00000210509 Gm45678 processed_pseudogene Interval_20767 chr10 120861338 120862099 + 0 NA exon (ENSMUSG00000087480.1, exon 3 of 3) antisense-exon (ENSMUSG00000087480.1, exon 3 of 3) 4089 ENSMUSG00000087480.1 ENSMUSG00000087480 ENSMUST00000127564 Gm15910 antisense Interval_128362 chr5 112791841 112792969 + 0 NA promoter-TSS (ENSMUSG00000098230.7) antisense-promoter-TSS (ENSMUSG00000098230.7) -927 ENSMUSG00000098230.7 ENSMUSG00000098230 ENSMUST00000189887 1700095B10Rik antisense Interval_122485 chr5 23392355 23393006 + 0 NA intron (ENSMUSG00000073147.3, intron 2 of 6) lincRNA-intron (ENSMUSG00000073147.3, intron 2 of 6) -3423 ENSMUSG00000105042.1 ENSMUSG00000105042 ENSMUST00000197390 Gm42509 TEC Interval_70565 chr17 12047236 12048113 + 0 NA intron (ENSMUSG00000023826.16, intron 1 of 2) protein_coding-intron (ENSMUSG00000023826.16, intron 1 of 2) -71655 ENSMUSG00000023827.8 ENSMUSG00000023827 ENSMUST00000167905 Agpat4 protein_coding Interval_83743 chr19 4328401 4329312 + 0 NA promoter-TSS (ENSMUSG00000054611.17) protein_coding-promoter-TSS (ENSMUSG00000054611.17) -445 ENSMUSG00000054611.17 ENSMUSG00000054611 ENSMUST00000176495 Kdm2a protein_coding Interval_34678 chr12 8571638 8572031 + 0 NA intron (ENSMUSG00000020600.13, intron 1 of 6) protein_coding-intron (ENSMUSG00000020600.13, intron 1 of 6) -32289 ENSMUSG00000020600.13 ENSMUSG00000020600 ENSMUST00000129465 Slc7a15 protein_coding Interval_151119 chr7 118658212 118659304 + 0 NA intron (ENSMUSG00000030650.18, intron 13 of 20) protein_coding-intron (ENSMUSG00000030650.18, intron 10 of 17) -29787 ENSMUSG00000109357.1 ENSMUSG00000109357 ENSMUST00000208632 Gm45236 TEC Interval_77575 chr17 92133210 92133534 + 0 NA Intergenic Intergenic -47693 ENSMUSG00000117584.1 ENSMUSG00000117584 ENSMUST00000234894 Gm49994 processed_pseudogene Interval_90497 chr2 30816386 30816590 + 0 NA TTS (ENSMUSG00000026857.9) protein_coding-TTS (ENSMUSG00000026857.9) 8546 ENSMUSG00000026857.9 ENSMUSG00000026857 ENSMUST00000143970 Ntmt1 protein_coding Interval_89560 chr2 22766616 22767636 + 0 NA Intergenic Intergenic -4048 ENSMUSG00000083057.1 ENSMUSG00000083057 ENSMUST00000121678 Gm13356 processed_pseudogene Interval_64690 chr16 14215531 14215914 + 0 NA intron (ENSMUSG00000018830.10, intron 26 of 41) protein_coding-intron (ENSMUSG00000018830.10, intron 25 of 40) 40595 ENSMUSG00000022678.16 ENSMUSG00000022678 ENSMUST00000149232 Nde1 protein_coding Interval_142355 chr6 140819161 140819823 + 0 NA Intergenic Intergenic -34788 ENSMUSG00000108039.1 ENSMUSG00000108039 ENSMUST00000203498 Gm43925 processed_pseudogene Interval_19077 chr10 94276386 94277568 + 0 NA Intergenic Intergenic 21726 ENSMUSG00000053420.6 ENSMUSG00000053420 ENSMUST00000065826 Gm4792 protein_coding Interval_73664 chr17 42569720 42570095 + 0 NA intron (ENSMUSG00000043972.8, intron 6 of 6) protein_coding-intron (ENSMUSG00000043972.8, intron 6 of 6) 41488 ENSMUSG00000043972.8 ENSMUSG00000043972 ENSMUST00000068355 Opn5 protein_coding Interval_159531 chr8 95271602 95273139 + 0 NA intron (ENSMUSG00000031789.17, intron 16 of 32) protein_coding-intron (ENSMUSG00000031789.17, intron 16 of 32) 28296 ENSMUSG00000031789.17 ENSMUSG00000031789 ENSMUST00000212237 Cngb1 protein_coding Interval_25350 chr11 46590489 46591689 + 0 NA Intergenic Intergenic 19553 ENSMUSG00000046974.6 ENSMUSG00000046974 ENSMUST00000050937 BC053393 protein_coding Interval_44534 chr13 45827057 45827430 + 0 NA intron (ENSMUSG00000046876.16, intron 2 of 2) protein_coding-intron (ENSMUSG00000046876.16, intron 3 of 7) 77671 ENSMUSG00000114131.1 ENSMUSG00000114131 ENSMUST00000221126 Gm47460 antisense Interval_60309 chr15 72737147 72737412 + 0 NA intron (ENSMUSG00000047921.17, intron 17 of 21) protein_coding-intron (ENSMUSG00000047921.17, intron 17 of 21) 11875 ENSMUSG00000116314.1 ENSMUSG00000116314 ENSMUST00000229330 Gm49459 processed_pseudogene Interval_157488 chr8 70849461 70850840 + 0 NA intron (ENSMUSG00000002908.17, intron 6 of 10) protein_coding-intron (ENSMUSG00000002908.17, intron 5 of 9) -12977 ENSMUSG00000020887.3 ENSMUSG00000020887 ENSMUST00000050921 A230052G05Rik TEC Interval_89005 chr2 14288415 14289343 + 0 NA intron (ENSMUSG00000026712.3, intron 11 of 29) protein_coding-intron (ENSMUSG00000026712.3, intron 11 of 29) 27876 ENSMUSG00000077897.1 ENSMUSG00000077897 ENSMUST00000104704 Mir511 miRNA Interval_12725 chr10 4504061 4505423 + 0 NA intron (ENSMUSG00000019767.12, intron 1 of 10) protein_coding-intron (ENSMUSG00000019767.12, intron 1 of 10) 20508 ENSMUSG00000065371.1 ENSMUSG00000065371 ENSMUST00000083437 Gm22739 snRNA Interval_165391 chr9 47288726 47289134 + 0 NA intron (ENSMUSG00000109844.2, intron 3 of 5) lincRNA-intron (ENSMUSG00000109844.2, intron 3 of 5) -18187 ENSMUSG00000109844.2 ENSMUSG00000109844 ENSMUST00000209906 Gm31816 lincRNA Interval_108207 chr3 122483529 122484193 + 0 NA exon (ENSMUSG00000028121.8, exon 1 of 3) protein_coding-exon (ENSMUSG00000028121.8, exon 1 of 3) 19134 ENSMUSG00000087743.1 ENSMUSG00000087743 ENSMUST00000157118 Gm25153 snRNA Interval_168319 chr9 78651011 78651341 + 0 NA intron (ENSMUSG00000046186.8, intron 5 of 32) protein_coding-intron (ENSMUSG00000046186.8, intron 5 of 32) -21048 ENSMUSG00000091147.1 ENSMUSG00000091147 ENSMUST00000171278 4921509A06Rik antisense Interval_34426 chr12 4089999 4090275 + 0 NA intron (ENSMUSG00000020657.16, intron 2 of 2) protein_coding-intron (ENSMUSG00000020657.16, intron 3 of 6) 1555 ENSMUSG00000020657.16 ENSMUSG00000020657 ENSMUST00000220273 Dnajc27 protein_coding Interval_77375 chr17 88312701 88313232 + 0 NA intron (ENSMUSG00000117351.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000117351.1, intron 1 of 1) -7588 ENSMUSG00000117497.1 ENSMUSG00000117497 ENSMUST00000234925 1700116H05Rik lincRNA Interval_56611 chr14 120845344 120846777 + 0 NA Intergenic Intergenic 18902 ENSMUSG00000115028.1 ENSMUSG00000115028 ENSMUST00000228417 Gm9391 processed_pseudogene Interval_161908 chr8 123687585 123688376 + 0 NA intron (ENSMUSG00000092329.1, intron 1 of 15) protein_coding-intron (ENSMUSG00000092329.1, intron 1 of 15) 34051 ENSMUSG00000039960.5 ENSMUSG00000039960 ENSMUST00000045487 Rhou protein_coding Interval_92842 chr2 66256174 66257319 + 0 NA promoter-TSS (ENSMUSG00000034848.17) protein_coding-promoter-TSS (ENSMUSG00000034848.17) -21608 ENSMUSG00000034848.17 ENSMUSG00000034848 ENSMUST00000131503 Ttc21b protein_coding Interval_23794 chr11 26307260 26307831 + 0 NA Intergenic Intergenic 30158 ENSMUSG00000065889.1 ENSMUSG00000065889 ENSMUST00000083955 Gm22868 snRNA Interval_149432 chr7 98475770 98475970 + 0 NA TTS (ENSMUSG00000074003.4) protein_coding-TTS (ENSMUSG00000074003.4) 4337 ENSMUSG00000074003.4 ENSMUSG00000074003 ENSMUST00000206524 Gucy2d protein_coding Interval_64146 chr16 8715149 8716263 + 0 NA intron (ENSMUSG00000022710.17, intron 2 of 30) protein_coding-intron (ENSMUSG00000022710.17, intron 2 of 30) -17174 ENSMUSG00000022710.17 ENSMUSG00000022710 ENSMUST00000159509 Usp7 protein_coding Interval_136897 chr6 63503020 63503415 + 0 NA intron (ENSMUSG00000071424.10, intron 1 of 8) protein_coding-intron (ENSMUSG00000071424.10, intron 1 of 15) -174776 ENSMUSG00000107525.1 ENSMUSG00000107525 ENSMUST00000204180 Gm44071 antisense Interval_158203 chr8 79745367 79746402 + 0 NA intron (ENSMUSG00000036977.8, intron 4 of 4) protein_coding-intron (ENSMUSG00000036977.8, intron 4 of 4) 6529 ENSMUSG00000110202.1 ENSMUSG00000110202 ENSMUST00000211147 Gm45435 antisense Interval_97486 chr2 137247365 137247800 + 0 NA Intergenic Intergenic -40921 ENSMUSG00000085504.1 ENSMUSG00000085504 ENSMUST00000130262 Gm14055 lincRNA Interval_73666 chr17 42585203 42585561 + 0 NA intron (ENSMUSG00000043972.8, intron 4 of 6) protein_coding-intron (ENSMUSG00000043972.8, intron 4 of 6) 26013 ENSMUSG00000043972.8 ENSMUSG00000043972 ENSMUST00000068355 Opn5 protein_coding Interval_99128 chr2 157373684 157373961 + 0 NA intron (ENSMUSG00000063019.5, intron 1 of 2) protein_coding-intron (ENSMUSG00000063019.5, intron 1 of 2) 6228 ENSMUSG00000063019.5 ENSMUSG00000063019 ENSMUST00000081202 Manbal protein_coding Interval_130248 chr5 125189459 125190326 + 0 NA Intergenic Intergenic 82923 ENSMUSG00000105039.1 ENSMUSG00000105039 ENSMUST00000198586 Gm32585 lincRNA Interval_122048 chr5 14586117 14587809 + 0 NA intron (ENSMUSG00000061601.15, intron 3 of 22) protein_coding-intron (ENSMUSG00000061601.15, intron 3 of 24) -9901 ENSMUSG00000105485.1 ENSMUSG00000105485 ENSMUST00000200102 Gm42447 TEC Interval_165607 chr9 50301452 50301978 + 0 NA intron (ENSMUSG00000111359.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000111359.1, intron 1 of 2) 102 ENSMUSG00000111359.1 ENSMUSG00000111359 ENSMUST00000214933 Gm39336 lincRNA Interval_30450 chr11 94456596 94456829 + 0 NA intron (ENSMUSG00000020866.17, intron 9 of 22) protein_coding-intron (ENSMUSG00000020866.17, intron 9 of 34) 16929 ENSMUSG00000020866.17 ENSMUSG00000020866 ENSMUST00000152811 Cacna1g protein_coding Interval_120721 chr4 150265001 150265948 + 0 NA Intergenic Intergenic 18014 ENSMUSG00000063524.13 ENSMUSG00000063524 ENSMUST00000136310 Eno1 protein_coding Interval_100833 chr2 172788988 172789658 + 0 NA Intergenic Intergenic 75018 ENSMUSG00000093160.1 ENSMUSG00000093160 ENSMUST00000175419 Gm22773 miRNA Interval_164951 chr9 43330207 43330526 + 0 NA intron (ENSMUSG00000032013.6, intron 1 of 2) protein_coding-intron (ENSMUSG00000032013.6, intron 7 of 8) 11407 ENSMUSG00000032013.6 ENSMUSG00000032013 ENSMUST00000217067 Trim29 protein_coding Interval_121063 chr4 152530251 152531259 + 0 NA intron (ENSMUSG00000039577.17, intron 10 of 28) protein_coding-intron (ENSMUSG00000039577.17, intron 10 of 28) 52577 ENSMUSG00000039577.17 ENSMUSG00000039577 ENSMUST00000123635 Nphp4 protein_coding Interval_143692 chr7 15640656 15641001 + 0 NA promoter-TSS (ENSMUSG00000066772.12) protein_coding-promoter-TSS (ENSMUSG00000066772.12) 2380 ENSMUSG00000105898.1 ENSMUSG00000105898 ENSMUST00000196512 Obox4-ps32 unprocessed_pseudogene Interval_29687 chr11 86051398 86051703 + 0 NA Intergenic Intergenic 101055 ENSMUSG00000081632.1 ENSMUSG00000081632 ENSMUST00000118790 Gm11443 processed_pseudogene Interval_39812 chr12 98674480 98675377 + 0 NA Intergenic Intergenic 8822 ENSMUSG00000021009.15 ENSMUSG00000021009 ENSMUST00000222071 Ptpn21 protein_coding Interval_48031 chr13 95390009 95391309 + 0 NA Intergenic Intergenic -15325 ENSMUSG00000021681.8 ENSMUSG00000021681 ENSMUST00000161671 Aggf1 protein_coding Interval_168969 chr9 89845484 89845725 + 0 NA intron (ENSMUSG00000098627.7, intron 3 of 5) lincRNA-intron (ENSMUSG00000098627.7, intron 3 of 5) 18622 ENSMUSG00000098627.7 ENSMUSG00000098627 ENSMUST00000184759 4930524O08Rik lincRNA Interval_130558 chr5 128788281 128789477 + 0 NA intron (ENSMUSG00000029420.14, intron 10 of 20) protein_coding-intron (ENSMUSG00000029420.14, intron 12 of 21) -13329 ENSMUSG00000106522.1 ENSMUSG00000106522 ENSMUST00000199333 Gm42871 sense_intronic Interval_62263 chr15 89287965 89289605 + 0 NA TTS (ENSMUSG00000036529.17) protein_coding-TTS (ENSMUSG00000036529.17) 5025 ENSMUSG00000036529.17 ENSMUSG00000036529 ENSMUST00000146637 Sbf1 protein_coding Interval_95174 chr2 104556398 104558233 + 0 NA exon (ENSMUSG00000082379.1, exon 1 of 1) processed_pseudogene-exon (ENSMUSG00000082379.1, exon 1 of 1) 654 ENSMUSG00000082379.1 ENSMUSG00000082379 ENSMUST00000118103 Gm13884 processed_pseudogene Interval_92726 chr2 64394687 64395048 + 0 NA Intergenic Intergenic -1007 ENSMUSG00000087702.1 ENSMUSG00000087702 ENSMUST00000142353 Gm13575 lincRNA Interval_113945 chr4 60713049 60713462 + 0 NA Intergenic Intergenic 28071 ENSMUSG00000094793.1 ENSMUSG00000094793 ENSMUST00000117932 Mup12 protein_coding Interval_86346 chr19 38914963 38916129 + 0 NA intron (ENSMUSG00000048720.8, intron 9 of 10) protein_coding-intron (ENSMUSG00000048720.8, intron 11 of 12) -15844 ENSMUSG00000025001.11 ENSMUSG00000025001 ENSMUST00000127968 Hells protein_coding Interval_118042 chr4 128577448 128577677 + 0 NA Intergenic Intergenic 24987 ENSMUSG00000028804.20 ENSMUSG00000028804 ENSMUST00000221199 Csmd2 protein_coding Interval_20271 chr10 116554188 116554868 + 0 NA intron (ENSMUSG00000020166.15, intron 1 of 5) protein_coding-intron (ENSMUSG00000020166.15, intron 1 of 4) -12254 ENSMUSG00000112881.1 ENSMUSG00000112881 ENSMUST00000220056 Gm49344 TEC Interval_55836 chr14 101313310 101314158 + 0 NA Intergenic Intergenic -29810 ENSMUSG00000115538.1 ENSMUSG00000115538 ENSMUST00000227762 Hspd1-ps5 processed_pseudogene Interval_119278 chr4 136610322 136610650 + 0 NA promoter-TSS (ENSMUSG00000036921.2) protein_coding-promoter-TSS (ENSMUSG00000036921.2) 49 ENSMUSG00000036921.2 ENSMUSG00000036921 ENSMUST00000046647 Tex46 protein_coding Interval_46091 chr13 61592507 61592737 + 0 NA Intergenic Intergenic -24448 ENSMUSG00000114904.1 ENSMUSG00000114904 ENSMUST00000225902 Gm49352 protein_coding Interval_132351 chr5 144387951 144388975 + 0 NA intron (ENSMUSG00000047843.16, intron 3 of 3) protein_coding-intron (ENSMUSG00000047843.16, intron 3 of 3) -18139 ENSMUSG00000083574.1 ENSMUSG00000083574 ENSMUST00000118354 Gm15709 processed_pseudogene Interval_13221 chr10 13178829 13179285 + 0 NA intron (ENSMUSG00000019814.5, intron 10 of 10) protein_coding-intron (ENSMUSG00000019814.5, intron 10 of 10) -1034 ENSMUSG00000019815.7 ENSMUSG00000019815 ENSMUST00000219970 Zc2hc1b protein_coding Interval_84985 chr19 20971966 20972167 + 0 NA Intergenic Intergenic 49674 ENSMUSG00000118293.1 ENSMUSG00000118293 ENSMUST00000238088 Gm32750 antisense Interval_810 chr1 11580194 11580628 + 0 NA intron (ENSMUSG00000057715.13, intron 1 of 2) protein_coding-intron (ENSMUSG00000057715.13, intron 5 of 13) 1105 ENSMUSG00000057715.13 ENSMUSG00000057715 ENSMUST00000191437 A830018L16Rik protein_coding Interval_79044 chr18 24153569 24153991 + 0 NA Intergenic Intergenic -31827 ENSMUSG00000047989.11 ENSMUSG00000047989 ENSMUST00000125169 Ino80c protein_coding Interval_5874 chr1 92877658 92877926 + 0 NA intron (ENSMUSG00000034212.14, intron 13 of 17) protein_coding-intron (ENSMUSG00000034212.14, intron 13 of 17) -6072 ENSMUSG00000034212.14 ENSMUSG00000034212 ENSMUST00000112998 Ankmy1 protein_coding Interval_132210 chr5 143363846 143364916 + 0 NA intron (ENSMUSG00000010825.17, intron 1 of 20) protein_coding-intron (ENSMUSG00000010825.17, intron 1 of 20) -8593 ENSMUSG00000010825.17 ENSMUSG00000010825 ENSMUST00000138948 Grid2ip protein_coding Interval_78662 chr18 16590307 16590765 + 0 NA intron (ENSMUSG00000024304.14, intron 14 of 14) protein_coding-intron (ENSMUSG00000024304.14, intron 15 of 15) -138197 ENSMUSG00000085575.1 ENSMUSG00000085575 ENSMUST00000149095 Gm15485 antisense Interval_149277 chr7 96899687 96900398 + 0 NA intron (ENSMUSG00000048078.16, intron 31 of 32) protein_coding-intron (ENSMUSG00000048078.16, intron 31 of 32) 20060 ENSMUSG00000087980.1 ENSMUSG00000087980 ENSMUST00000157355 Gm22226 snRNA Interval_138291 chr6 86964413 86964644 + 0 NA intron (ENSMUSG00000057230.14, intron 2 of 4) protein_coding-intron (ENSMUSG00000057230.14, intron 12 of 19) 2887 ENSMUSG00000107576.1 ENSMUSG00000107576 ENSMUST00000204381 Gm44093 TEC Interval_117093 chr4 119482902 119483570 + 0 NA intron (ENSMUSG00000048899.8, intron 1 of 3) protein_coding-intron (ENSMUSG00000048899.8, intron 1 of 4) 9273 ENSMUSG00000048899.8 ENSMUSG00000048899 ENSMUST00000126728 Rimkla protein_coding Interval_172616 chrX 38451204 38451453 + 0 NA intron (ENSMUSG00000016534.15, intron 1 of 8) protein_coding-intron (ENSMUSG00000016534.15, intron 1 of 8) 5086 ENSMUSG00000016534.15 ENSMUSG00000016534 ENSMUST00000144663 Lamp2 protein_coding Interval_149182 chr7 96086029 96086745 + 0 NA Intergenic Intergenic 117149 ENSMUSG00000108528.1 ENSMUSG00000108528 ENSMUST00000205708 Gm8319 processed_pseudogene Interval_150827 chr7 115216680 115217565 + 0 NA Intergenic Intergenic 44849 ENSMUSG00000099211.1 ENSMUSG00000099211 ENSMUST00000183778 Gm27684 miRNA Interval_69415 chr16 93041413 93041980 + 0 NA Intergenic Intergenic -31059 ENSMUSG00000098983.1 ENSMUSG00000098983 ENSMUST00000184529 Gm28003 miRNA Interval_94794 chr2 94382721 94383184 + 0 NA intron (ENSMUSG00000027194.16, intron 2 of 2) protein_coding-intron (ENSMUSG00000027194.16, intron 2 of 19) 2146 ENSMUSG00000081476.1 ENSMUSG00000081476 ENSMUST00000117207 Itpa-ps1 processed_pseudogene Interval_108465 chr3 127451220 127454237 + 0 NA intron (ENSMUSG00000032826.19, intron 1 of 1) protein_coding-intron (ENSMUSG00000032826.19, intron 1 of 1) -28392 ENSMUSG00000105116.1 ENSMUSG00000105116 ENSMUST00000196760 Gm44494 miRNA Interval_36722 chr12 52503191 52504909 + 0 NA promoter-TSS (ENSMUSG00000035133.9) protein_coding-promoter-TSS (ENSMUSG00000035133.9) 34 ENSMUSG00000035133.9 ENSMUSG00000035133 ENSMUST00000110725 Arhgap5 protein_coding Interval_2794 chr1 45357569 45358754 + 0 NA Intergenic Intergenic 23961 ENSMUSG00000026043.18 ENSMUSG00000026043 ENSMUST00000186021 Col3a1 protein_coding Interval_87291 chr19 47415231 47416593 + 0 NA intron (ENSMUSG00000053617.12, intron 2 of 13) protein_coding-intron (ENSMUSG00000053617.12, intron 2 of 14) -5553 ENSMUSG00000053617.12 ENSMUSG00000053617 ENSMUST00000237828 Sh3pxd2a protein_coding Interval_158047 chr8 78292380 78292586 + 0 NA intron (ENSMUSG00000037101.16, intron 6 of 10) protein_coding-intron (ENSMUSG00000037101.16, intron 9 of 13) 79133 ENSMUSG00000037101.16 ENSMUSG00000037101 ENSMUST00000124713 Ttc29 protein_coding Interval_116677 chr4 116610545 116610956 + 0 NA TTS (ENSMUSG00000028693.15) protein_coding-TTS (ENSMUSG00000028693.15) -4502 ENSMUSG00000028693.15 ENSMUSG00000028693 ENSMUST00000148436 Nasp protein_coding Interval_60452 chr15 73836070 73836727 + 0 NA intron (ENSMUSG00000086361.1, intron 3 of 3) protein_coding-intron (ENSMUSG00000072487.11, intron 1 of 10) 1837 ENSMUSG00000086361.1 ENSMUSG00000086361 ENSMUST00000154520 Gm6569 protein_coding Interval_104890 chr3 78495360 78496438 + 0 NA Intergenic Intergenic -7262 ENSMUSG00000084370.3 ENSMUSG00000084370 ENSMUST00000117905 Gm15442 processed_pseudogene Interval_47911 chr13 94321537 94322451 + 0 NA Intergenic Intergenic -22135 ENSMUSG00000114056.1 ENSMUSG00000114056 ENSMUST00000220897 Gm5668 processed_pseudogene Interval_159919 chr8 105198640 105199010 + 0 NA intron (ENSMUSG00000031885.14, intron 4 of 4) protein_coding-intron (ENSMUSG00000031885.14, intron 4 of 5) -5168 ENSMUSG00000084711.1 ENSMUSG00000084711 ENSMUST00000122762 Gm24629 misc_RNA Interval_32734 chr11 110179040 110179420 + 0 NA intron (ENSMUSG00000044749.13, intron 36 of 38) protein_coding-intron (ENSMUSG00000044749.13, intron 36 of 38) -11175 ENSMUSG00000041797.7 ENSMUSG00000041797 ENSMUST00000126499 Abca9 protein_coding Interval_88124 chr19 59400023 59401146 + 0 NA Intergenic Intergenic 10800 ENSMUSG00000110210.1 ENSMUSG00000110210 ENSMUST00000211358 Gm33756 lincRNA Interval_96542 chr2 125559271 125559664 + 0 NA Intergenic Intergenic -53395 ENSMUSG00000027204.13 ENSMUSG00000027204 ENSMUST00000148272 Fbn1 protein_coding Interval_139403 chr6 99874530 99874930 + 0 NA Intergenic Intergenic 3604 ENSMUSG00000084319.3 ENSMUSG00000084319 ENSMUST00000121046 Tpt1-ps3 processed_pseudogene Interval_12195 chr1 190776143 190776331 + 0 NA intron (ENSMUSG00000089872.10, intron 5 of 5) protein_coding-intron (ENSMUSG00000089872.10, intron 14 of 14) 123480 ENSMUSG00000089872.10 ENSMUSG00000089872 ENSMUST00000159066 Rps6kc1 protein_coding Interval_81688 chr18 63474781 63475472 + 0 NA Intergenic Intergenic -33043 ENSMUSG00000089156.1 ENSMUSG00000089156 ENSMUST00000158531 Gm23581 snRNA Interval_119584 chr4 138499793 138500500 + 0 NA Intergenic Intergenic 45832 ENSMUSG00000046447.3 ENSMUSG00000046447 ENSMUST00000050918 Camk2n1 protein_coding Interval_113118 chr4 48448258 48448836 + 0 NA intron (ENSMUSG00000028345.15, intron 12 of 15) protein_coding-intron (ENSMUSG00000028345.15, intron 11 of 14) 24875 ENSMUSG00000028345.15 ENSMUSG00000028345 ENSMUST00000132911 Tex10 protein_coding Interval_1672 chr1 30928960 30929662 + 0 NA Intergenic Intergenic 19998 ENSMUSG00000026064.16 ENSMUSG00000026064 ENSMUST00000130934 Ptp4a1 protein_coding Interval_172914 chrX 53369644 53370919 + 0 NA intron (ENSMUSG00000023074.11, intron 1 of 6) protein_coding-intron (ENSMUSG00000023074.11, intron 1 of 5) 221 ENSMUSG00000023074.11 ENSMUSG00000023074 ENSMUST00000023836 Mospd1 protein_coding Interval_96258 chr2 121023076 121023746 + 0 NA promoter-TSS (ENSMUSG00000023216.13) protein_coding-promoter-TSS (ENSMUSG00000023216.13) 13334 ENSMUSG00000023216.13 ENSMUSG00000023216 ENSMUST00000152217 Epb42 protein_coding Interval_28454 chr11 76004370 76004827 + 0 NA Intergenic Intergenic 4686 ENSMUSG00000053783.5 ENSMUSG00000053783 ENSMUST00000066408 1700016K19Rik protein_coding Interval_59275 chr15 50667752 50668611 + 0 NA intron (ENSMUSG00000038679.16, intron 7 of 8) protein_coding-intron (ENSMUSG00000038679.16, intron 5 of 6) 220933 ENSMUSG00000084458.1 ENSMUSG00000084458 ENSMUST00000122509 Mir1907 miRNA Interval_77480 chr17 89701367 89701580 + 0 NA TTS (ENSMUSG00000117511.1) lincRNA-TTS (ENSMUSG00000117511.1) 51053 ENSMUSG00000117511.1 ENSMUSG00000117511 ENSMUST00000234973 Gm50061 lincRNA Interval_173749 chrX 103447388 103448339 + 0 NA exon (ENSMUSG00000085715.2, exon 2 of 4) antisense-exon (ENSMUSG00000085715.2, exon 2 of 4) 141 ENSMUSG00000085715.2 ENSMUSG00000085715 ENSMUST00000211291 Tsix antisense Interval_1763 chr1 33621519 33622780 + 0 NA promoter-TSS (ENSMUSG00000026134.11) protein_coding-promoter-TSS (ENSMUSG00000026134.11) -7 ENSMUSG00000026134.11 ENSMUSG00000026134 ENSMUST00000187353 Prim2 protein_coding Interval_119437 chr4 137631270 137633288 + 0 NA intron (ENSMUSG00000043411.15, intron 4 of 4) protein_coding-intron (ENSMUSG00000043411.15, intron 15 of 27) -18022 ENSMUSG00000043411.15 ENSMUSG00000043411 ENSMUST00000125151 Usp48 protein_coding Interval_48026 chr13 95347042 95348053 + 0 NA Intergenic Intergenic 14929 ENSMUSG00000077380.1 ENSMUSG00000077380 ENSMUST00000104192 Gm22661 snoRNA Interval_31800 chr11 102955871 102956975 + 0 NA Intergenic Intergenic 7964 ENSMUSG00000085338.1 ENSMUSG00000085338 ENSMUST00000138424 2410004I01Rik lincRNA Interval_119793 chr4 140021577 140022205 + 0 NA Intergenic Intergenic -53865 ENSMUSG00000078234.6 ENSMUSG00000078234 ENSMUST00000105031 Klhdc7a protein_coding Interval_142238 chr6 139596415 139597073 + 0 NA intron (ENSMUSG00000030228.18, intron 2 of 6) protein_coding-intron (ENSMUSG00000030228.18, intron 1 of 1) -19539 ENSMUSG00000108147.1 ENSMUSG00000108147 ENSMUST00000203475 4930443G03Rik TEC Interval_50972 chr14 21425447 21427241 + 0 NA intron (ENSMUSG00000039197.10, intron 10 of 10) protein_coding-intron (ENSMUSG00000039197.10, intron 10 of 10) -24130 ENSMUSG00000088873.1 ENSMUSG00000088873 ENSMUST00000158248 Gm25864 snRNA Interval_142058 chr6 136841881 136842906 + 0 NA Intergenic Intergenic 5856 ENSMUSG00000107899.1 ENSMUSG00000107899 ENSMUST00000204898 Gm44069 TEC Interval_2966 chr1 51690124 51690397 + 0 NA Intergenic Intergenic 7640 ENSMUSG00000101741.1 ENSMUSG00000101741 ENSMUST00000186769 Gm28055 lincRNA Interval_102828 chr3 31707529 31708920 + 0 NA Intergenic Intergenic -17639 ENSMUSG00000103499.5 ENSMUSG00000103499 ENSMUST00000192046 Gm6558 transcribed_unprocessed_pseudogene Interval_66430 chr16 33813515 33814060 + 0 NA intron (ENSMUSG00000022824.12, intron 10 of 12) protein_coding-intron (ENSMUSG00000022824.12, intron 9 of 11) 10493 ENSMUSG00000116916.1 ENSMUSG00000116916 ENSMUST00000231807 Gm34967 processed_pseudogene Interval_55483 chr14 88407021 88407208 + 0 NA Intergenic Intergenic 8466 ENSMUSG00000115114.1 ENSMUSG00000115114 ENSMUST00000227261 Gm48930 transcribed_processed_pseudogene Interval_14467 chr10 34139877 34140395 + 0 NA Intergenic Intergenic -12152 ENSMUSG00000046031.7 ENSMUSG00000046031 ENSMUST00000062784 Calhm6 protein_coding Interval_21731 chr11 4001587 4002113 + 0 NA promoter-TSS (ENSMUSG00000084170.1) processed_pseudogene-promoter-TSS (ENSMUSG00000084170.1) -607 ENSMUSG00000084170.1 ENSMUSG00000084170 ENSMUST00000121403 Gm11954 processed_pseudogene Interval_144829 chr7 28492394 28492841 + 0 NA promoter-TSS (ENSMUSG00000099417.1) transcribed_processed_pseudogene-promoter-TSS (ENSMUSG00000099417.1) 67 ENSMUSG00000099417.1 ENSMUSG00000099417 ENSMUST00000186274 1700028B04Rik transcribed_processed_pseudogene Interval_161142 chr8 117747289 117748539 + 0 NA intron (ENSMUSG00000110494.1, intron 1 of 1) protein_coding-intron (ENSMUSG00000031844.8, intron 3 of 4) 346 ENSMUSG00000110494.1 ENSMUSG00000110494 ENSMUST00000212910 Gm31774 antisense Interval_102726 chr3 30616324 30616968 + 0 NA exon (ENSMUSG00000037730.13, exon 7 of 7) protein_coding-exon (ENSMUSG00000037730.13, exon 7 of 7) 14002 ENSMUSG00000037730.13 ENSMUSG00000037730 ENSMUST00000193736 Mynn protein_coding Interval_63844 chr16 3955873 3956399 + 0 NA intron (ENSMUSG00000049871.14, intron 6 of 12) protein_coding-intron (ENSMUSG00000049871.14, intron 6 of 13) 9504 ENSMUSG00000049871.14 ENSMUSG00000049871 ENSMUST00000163478 Nlrc3 protein_coding Interval_70406 chr17 9853894 9855152 + 0 NA Intergenic Intergenic -5335 ENSMUSG00000117290.1 ENSMUSG00000117290 ENSMUST00000232698 Gm34883 TEC Interval_90380 chr2 30084588 30085099 + 0 NA intron (ENSMUSG00000026785.14, intron 1 of 6) protein_coding-intron (ENSMUSG00000026785.14, intron 10 of 21) 190 ENSMUSG00000026785.14 ENSMUSG00000026785 ENSMUST00000156197 Pkn3 protein_coding Interval_63003 chr15 98603679 98604621 + 0 NA TTS (ENSMUSG00000022994.9) protein_coding-TTS (ENSMUSG00000022994.9) 676 ENSMUSG00000022994.9 ENSMUSG00000022994 ENSMUST00000226500 Adcy6 protein_coding Interval_56748 chr14 121842468 121842708 + 0 NA Intergenic Intergenic 11574 ENSMUSG00000115443.1 ENSMUSG00000115443 ENSMUST00000228932 Gm9395 processed_pseudogene Interval_74448 chr17 50698037 50699208 + 0 NA promoter-TSS (ENSMUSG00000044645.8) processed_pseudogene-promoter-TSS (ENSMUSG00000044645.8) -66 ENSMUSG00000044645.8 ENSMUSG00000044645 ENSMUST00000061681 Gm7334 processed_pseudogene Interval_114762 chr4 84850257 84850673 + 0 NA Intergenic Intergenic -34000 ENSMUSG00000038070.15 ENSMUSG00000038070 ENSMUST00000107190 Cntln protein_coding Interval_48695 chr13 101540885 101541088 + 0 NA Intergenic Intergenic -4220 ENSMUSG00000114400.1 ENSMUSG00000114400 ENSMUST00000224257 Gm47533 lincRNA Interval_32353 chr11 107112884 107114703 + 0 NA intron (ENSMUSG00000040481.17, intron 1 of 29) protein_coding-intron (ENSMUSG00000040481.17, intron 1 of 27) -43615 ENSMUSG00000087596.1 ENSMUSG00000087596 ENSMUST00000129501 Gm11715 antisense Interval_42248 chr13 10930887 10931157 + 0 NA Intergenic Intergenic -43401 ENSMUSG00000113673.1 ENSMUSG00000113673 ENSMUST00000221075 Gm47486 lincRNA Interval_158748 chr8 85840056 85841545 + 0 NA promoter-TSS (ENSMUSG00000036879.15) protein_coding-promoter-TSS (ENSMUSG00000036879.15) -2251 ENSMUSG00000036879.15 ENSMUSG00000036879 ENSMUST00000162305 Phkb protein_coding Interval_23402 chr11 22264161 22264434 + 0 NA intron (ENSMUSG00000042302.14, intron 2 of 4) protein_coding-intron (ENSMUSG00000042302.14, intron 1 of 23) 22498 ENSMUSG00000042302.14 ENSMUSG00000042302 ENSMUST00000137594 Ehbp1 protein_coding Interval_136098 chr6 50938865 50939601 + 0 NA Intergenic Intergenic -28035 ENSMUSG00000108153.1 ENSMUSG00000108153 ENSMUST00000203677 Gm44402 processed_pseudogene Interval_118289 chr4 130060662 130061297 + 0 NA exon (ENSMUSG00000040690.15, exon 23 of 70) protein_coding-exon (ENSMUSG00000040690.15, exon 23 of 70) 5924 ENSMUSG00000040690.15 ENSMUSG00000040690 ENSMUST00000135675 Col16a1 protein_coding Interval_170628 chr9 109685080 109685577 + 0 NA intron (ENSMUSG00000074059.3, intron 9 of 9) protein_coding-intron (ENSMUSG00000074059.3, intron 9 of 9) 17372 ENSMUSG00000074059.3 ENSMUSG00000074059 ENSMUST00000098359 Fbxw18 protein_coding Interval_83039 chr18 80661426 80661679 + 0 NA intron (ENSMUSG00000033016.16, intron 6 of 7) protein_coding-intron (ENSMUSG00000033016.16, intron 6 of 7) -43638 ENSMUSG00000118265.1 ENSMUSG00000118265 ENSMUST00000237404 Gm50211 antisense Interval_147997 chr7 77302847 77304629 + 0 NA Intergenic Intergenic -4742 ENSMUSG00000108611.1 ENSMUSG00000108611 ENSMUST00000207007 Gm44879 processed_pseudogene Interval_9630 chr1 160485219 160485449 + 0 NA intron (ENSMUSG00000026721.16, intron 13 of 20) protein_coding-intron (ENSMUSG00000026721.16, intron 13 of 20) -43430 ENSMUSG00000026721.16 ENSMUSG00000026721 ENSMUST00000193810 Rabgap1l protein_coding Interval_101172 chr2 178815722 178816521 + 0 NA Intergenic Intergenic 205012 ENSMUSG00000082215.3 ENSMUSG00000082215 ENSMUST00000118225 Gm14314 processed_pseudogene Interval_117079 chr4 119403029 119404903 + 0 NA intron (ENSMUSG00000028637.16, intron 2 of 14) protein_coding-intron (ENSMUSG00000028637.16, intron 2 of 14) 10466 ENSMUSG00000118403.1 ENSMUSG00000118403 ENSMUST00000238574 Gm50484 antisense Interval_139311 chr6 98482370 98484026 + 0 NA Intergenic Intergenic 68909 ENSMUSG00000107929.1 ENSMUSG00000107929 ENSMUST00000204069 4930595L18Rik lincRNA Interval_110719 chr4 6968668 6970944 + 0 NA intron (ENSMUSG00000041272.11, intron 1 of 2) protein_coding-intron (ENSMUSG00000041272.11, intron 1 of 8) 20677 ENSMUSG00000041272.11 ENSMUSG00000041272 ENSMUST00000150082 Tox protein_coding Interval_33925 chr11 119456400 119456929 + 0 NA intron (ENSMUSG00000070327.14, intron 38 of 66) protein_coding-intron (ENSMUSG00000070327.14, intron 38 of 66) -21393 ENSMUSG00000070327.14 ENSMUSG00000070327 ENSMUST00000172235 Rnf213 protein_coding Interval_173586 chrX 100386627 100387218 + 0 NA promoter-TSS (ENSMUSG00000059327.9) protein_coding-promoter-TSS (ENSMUSG00000059327.9) 1779 ENSMUSG00000059327.9 ENSMUSG00000059327 ENSMUST00000123547 Eda protein_coding Interval_73019 chr17 34163931 34165540 + 0 NA Intergenic Intergenic 7890 ENSMUSG00000079547.4 ENSMUSG00000079547 ENSMUST00000174765 H2-DMb1 protein_coding Interval_99367 chr2 160332569 160332891 + 0 NA intron (ENSMUSG00000074623.4, intron 1 of 2) protein_coding-intron (ENSMUSG00000074623.4, intron 1 of 2) 1432 ENSMUSG00000074623.4 ENSMUSG00000074623 ENSMUST00000099127 Gm826 protein_coding Interval_88728 chr2 10035609 10035889 + 0 NA intron (ENSMUSG00000025782.12, intron 2 of 6) protein_coding-intron (ENSMUSG00000025782.12, intron 2 of 6) -12089 ENSMUSG00000103570.1 ENSMUSG00000103570 ENSMUST00000194765 C630004M23Rik TEC Interval_105557 chr3 87742677 87743050 + 0 NA exon (ENSMUSG00000023084.11, exon 8 of 15) protein_coding-exon (ENSMUSG00000023084.11, exon 8 of 15) -1815 ENSMUSG00000023084.11 ENSMUSG00000023084 ENSMUST00000174208 Lrrc71 protein_coding Interval_118714 chr4 133330685 133331849 + 0 NA intron (ENSMUSG00000037622.14, intron 2 of 5) protein_coding-intron (ENSMUSG00000037622.14, intron 1 of 15) -9037 ENSMUSG00000037622.14 ENSMUSG00000037622 ENSMUST00000140976 Wdtc1 protein_coding Interval_92280 chr2 58054883 58055827 + 0 NA Intergenic Intergenic -2491 ENSMUSG00000026830.9 ENSMUSG00000026830 ENSMUST00000090940 Ermn protein_coding Interval_145332 chr7 33861340 33861808 + 0 NA Intergenic Intergenic -6351 ENSMUSG00000100743.1 ENSMUSG00000100743 ENSMUST00000186419 Scgb1b25-ps unprocessed_pseudogene Interval_16245 chr10 61679906 61681020 + 0 NA promoter-TSS (ENSMUSG00000020088.10) protein_coding-promoter-TSS (ENSMUSG00000020088.10) 164 ENSMUSG00000020088.10 ENSMUSG00000020088 ENSMUST00000219174 Sar1a protein_coding Interval_4197 chr1 71571466 71571733 + 0 NA intron (ENSMUSG00000026192.13, intron 11 of 11) protein_coding-intron (ENSMUSG00000026192.13, intron 11 of 15) 14420 ENSMUSG00000026192.13 ENSMUSG00000026192 ENSMUST00000154855 Atic protein_coding Interval_23997 chr11 29296552 29296952 + 0 NA Intergenic Intergenic 37570 ENSMUSG00000083298.1 ENSMUSG00000083298 ENSMUST00000119263 Gm12085 processed_pseudogene Interval_19349 chr10 97393961 97394162 + 0 NA Intergenic Intergenic -29417 ENSMUSG00000105557.1 ENSMUSG00000105557 ENSMUST00000198473 Mir3966 miRNA Interval_10991 chr1 177805077 177805868 + 0 NA Intergenic Intergenic -2959 ENSMUSG00000102483.2 ENSMUSG00000102483 ENSMUST00000194528 Catspere1 protein_coding Interval_121140 chr4 153437580 153437882 + 0 NA intron (ENSMUSG00000039546.9, intron 1 of 5) protein_coding-intron (ENSMUSG00000039546.9, intron 1 of 5) 44448 ENSMUSG00000039546.9 ENSMUSG00000039546 ENSMUST00000149177 Ajap1 protein_coding Interval_23914 chr11 28269559 28269829 + 0 NA Intergenic Intergenic 70120 ENSMUSG00000032889.7 ENSMUSG00000032889 ENSMUST00000042595 Gm6685 processed_pseudogene Interval_107755 chr3 113205209 113205512 + 0 NA intron (ENSMUSG00000081506.1, intron 1 of 8) unprocessed_pseudogene-intron (ENSMUSG00000081506.1, intron 1 of 8) 1337 ENSMUSG00000081506.1 ENSMUSG00000081506 ENSMUST00000122117 Amy2-ps1 unprocessed_pseudogene Interval_126068 chr5 77200718 77201178 + 0 NA Intergenic Intergenic 10257 ENSMUSG00000053030.11 ENSMUSG00000053030 ENSMUST00000121825 Spink2 protein_coding Interval_159423 chr8 94521434 94521939 + 0 NA intron (ENSMUSG00000074151.13, intron 45 of 52) protein_coding-intron (ENSMUSG00000074151.13, intron 41 of 48) 16640 ENSMUSG00000098511.1 ENSMUSG00000098511 ENSMUST00000184542 Mir7072 miRNA Interval_145173 chr7 30453435 30455231 + 0 NA exon (ENSMUSG00000036915.17, exon 6 of 15) protein_coding-exon (ENSMUSG00000036915.17, exon 6 of 15) -3469 ENSMUSG00000036915.17 ENSMUSG00000036915 ENSMUST00000117923 Kirrel2 protein_coding Interval_120378 chr4 148203770 148204653 + 0 NA Intergenic Intergenic 43590 ENSMUSG00000041556.8 ENSMUSG00000041556 ENSMUST00000047951 Fbxo2 protein_coding Interval_44508 chr13 45516350 45517288 + 0 NA intron (ENSMUSG00000000253.13, intron 2 of 8) protein_coding-intron (ENSMUSG00000000253.13, intron 2 of 8) -29334 ENSMUSG00000000253.13 ENSMUSG00000000253 ENSMUST00000222227 Gmpr protein_coding Interval_35216 chr12 18358630 18359126 + 0 NA Intergenic Intergenic -5584 ENSMUSG00000113132.1 ENSMUSG00000113132 ENSMUST00000220817 Gm9231 processed_pseudogene Interval_88679 chr2 9662602 9663249 + 0 NA Intergenic Intergenic -31584 ENSMUSG00000104276.1 ENSMUSG00000104276 ENSMUST00000191950 Gm37866 TEC Interval_8630 chr1 144872616 144872837 + 0 NA Intergenic Intergenic -80202 ENSMUSG00000101049.1 ENSMUSG00000101049 ENSMUST00000185254 Gm8856 processed_pseudogene Interval_157424 chr8 70269367 70269818 + 0 NA intron (ENSMUSG00000036054.15, intron 2 of 3) protein_coding-intron (ENSMUSG00000036054.15, intron 2 of 3) -13442 ENSMUSG00000003573.15 ENSMUSG00000003573 ENSMUST00000135368 Homer3 protein_coding Interval_67246 chr16 44737528 44738134 + 0 NA TTS (ENSMUSG00000036208.13) protein_coding-TTS (ENSMUSG00000036208.13) 8532 ENSMUSG00000022668.10 ENSMUSG00000022668 ENSMUST00000162479 Gtpbp8 protein_coding Interval_131433 chr5 137159228 137159982 + 0 NA intron (ENSMUSG00000079174.3, intron 1 of 1) lincRNA-intron (ENSMUSG00000079174.3, intron 1 of 1) 6465 ENSMUSG00000079174.3 ENSMUSG00000079174 ENSMUST00000111075 Gm3054 lincRNA Interval_17400 chr10 76371582 76372516 + 0 NA intron (ENSMUSG00000001151.10, intron 21 of 29) protein_coding-intron (ENSMUSG00000001151.10, intron 33 of 41) -16966 ENSMUSG00000101695.1 ENSMUSG00000101695 ENSMUST00000187079 1700094J05Rik antisense Interval_56068 chr14 105294355 105294575 + 0 NA promoter-TSS (ENSMUSG00000053253.16) protein_coding-promoter-TSS (ENSMUSG00000053253.16) -1481 ENSMUSG00000086260.1 ENSMUSG00000086260 ENSMUST00000145241 Gm16259 processed_pseudogene Interval_63105 chr15 99098130 99100379 + 0 NA promoter-TSS (ENSMUSG00000038009.7) protein_coding-promoter-TSS (ENSMUSG00000038009.7) 6084 ENSMUSG00000038009.7 ENSMUSG00000038009 ENSMUST00000061295 Dnajc22 protein_coding Interval_145287 chr7 31148243 31149034 + 0 NA promoter-TSS (ENSMUSG00000097149.1) antisense-promoter-TSS (ENSMUSG00000097149.1) -890 ENSMUSG00000097149.1 ENSMUSG00000097149 ENSMUST00000181958 G630030J09Rik antisense Interval_71254 chr17 21633277 21634027 + 0 NA TTS (ENSMUSG00000117013.1) transcribed_processed_pseudogene-TTS (ENSMUSG00000117013.1) 16822 ENSMUSG00000117070.1 ENSMUSG00000117070 ENSMUST00000233101 Gm41541 lincRNA Interval_67577 chr16 51139434 51139676 + 0 NA Intergenic Intergenic 88425 ENSMUSG00000116706.1 ENSMUSG00000116706 ENSMUST00000231893 Gm32431 lincRNA Interval_34310 chr12 3297267 3299232 + 0 NA intron (ENSMUSG00000020671.9, intron 1 of 5) protein_coding-intron (ENSMUSG00000020671.9, intron 1 of 5) 11720 ENSMUSG00000020671.9 ENSMUSG00000020671 ENSMUST00000021001 Rab10 protein_coding Interval_115029 chr4 88727328 88727563 + 0 NA intron (ENSMUSG00000086074.2, intron 2 of 2) antisense-intron (ENSMUSG00000086074.2, intron 2 of 2) -4980 ENSMUSG00000070923.4 ENSMUSG00000070923 ENSMUST00000094993 Klhl9 protein_coding Interval_12660 chr10 4203306 4204286 + 0 NA Intergenic Intergenic 9318 ENSMUSG00000111266.1 ENSMUSG00000111266 ENSMUST00000213553 Gm30570 lincRNA Interval_124987 chr5 63358735 63358947 + 0 NA Intergenic Intergenic 292053 ENSMUSG00000104868.1 ENSMUSG00000104868 ENSMUST00000067917 Gm9954 TEC Interval_126407 chr5 88152926 88153120 + 0 NA TTS (ENSMUSG00000079438.1) protein_coding-TTS (ENSMUSG00000079438.1) 1076 ENSMUSG00000079438.1 ENSMUSG00000079438 ENSMUST00000113255 Gm11115 protein_coding Interval_112832 chr4 45392257 45392891 + 0 NA Intergenic Intergenic 4544 ENSMUSG00000093185.1 ENSMUSG00000093185 ENSMUST00000175444 Gm25692 miRNA Interval_132059 chr5 142535819 142536036 + 0 NA intron (ENSMUSG00000029576.17, intron 2 of 13) protein_coding-intron (ENSMUSG00000029576.17, intron 2 of 14) -5851 ENSMUSG00000074817.2 ENSMUSG00000074817 ENSMUST00000099400 Papolb protein_coding Interval_127559 chr5 105293193 105293718 + 0 NA intron (ENSMUSG00000104713.4, intron 1 of 9) protein_coding-intron (ENSMUSG00000079362.5, intron 1 of 10) 229 ENSMUSG00000104713.4 ENSMUSG00000104713 ENSMUST00000199944 Gbp6 protein_coding Interval_13047 chr10 10106412 10107249 + 0 NA intron (ENSMUSG00000112713.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000101621.2, intron 1 of 1) 3269 ENSMUSG00000112713.1 ENSMUSG00000112713 ENSMUST00000217707 Gm48281 lincRNA Interval_169141 chr9 94193315 94193628 + 0 NA Intergenic Intergenic 54009 ENSMUSG00000111352.1 ENSMUSG00000111352 ENSMUST00000217499 Gm5369 processed_pseudogene Interval_114016 chr4 62485983 62486685 + 0 NA TTS (ENSMUSG00000028392.15) protein_coding-TTS (ENSMUSG00000028392.15) 6245 ENSMUSG00000028392.15 ENSMUSG00000028392 ENSMUST00000132237 Bspry protein_coding Interval_103219 chr3 37054284 37054697 + 0 NA intron (ENSMUSG00000086090.1, intron 1 of 1) antisense-intron (ENSMUSG00000086090.1, intron 2 of 2) 5540 ENSMUSG00000086090.1 ENSMUSG00000086090 ENSMUST00000139667 Gm12531 antisense Interval_15392 chr10 45365017 45366289 + 0 NA intron (ENSMUSG00000071317.4, intron 7 of 7) protein_coding-intron (ENSMUSG00000071317.4, intron 7 of 7) 12145 ENSMUSG00000071317.4 ENSMUSG00000071317 ENSMUST00000213557 Bves protein_coding Interval_34544 chr12 4995530 4996023 + 0 NA intron (ENSMUSG00000052812.5, intron 21 of 30) protein_coding-intron (ENSMUSG00000052812.5, intron 21 of 30) 3592 ENSMUSG00000087780.1 ENSMUSG00000087780 ENSMUST00000157155 Gm23167 snRNA Interval_82888 chr18 78260628 78261525 + 0 NA intron (ENSMUSG00000024552.16, intron 3 of 21) protein_coding-intron (ENSMUSG00000024552.16, intron 3 of 11) -88678 ENSMUSG00000090451.1 ENSMUSG00000090451 ENSMUST00000164064 Gm6133 protein_coding Interval_54047 chr14 64758602 64759173 + 0 NA intron (ENSMUSG00000060012.9, intron 23 of 39) protein_coding-intron (ENSMUSG00000060012.9, intron 23 of 39) 4969 ENSMUSG00000064442.1 ENSMUSG00000064442 ENSMUST00000082508 Gm26225 snoRNA Interval_130825 chr5 131013005 131013555 + 0 NA intron (ENSMUSG00000034040.16, intron 5 of 5) protein_coding-intron (ENSMUSG00000034040.16, intron 5 of 10) 29690 ENSMUSG00000106729.1 ENSMUSG00000106729 ENSMUST00000200842 Gm43165 TEC Interval_131060 chr5 134836324 134836997 + 0 NA Intergenic Intergenic 70073 ENSMUSG00000040576.8 ENSMUSG00000040576 ENSMUST00000047305 Tmem270 protein_coding Interval_56073 chr14 105313716 105314790 + 0 NA Intergenic Intergenic -21269 ENSMUSG00000086260.1 ENSMUSG00000086260 ENSMUST00000145241 Gm16259 processed_pseudogene Interval_104675 chr3 69318653 69318953 + 0 NA intron (ENSMUSG00000027784.10, intron 1 of 3) protein_coding-intron (ENSMUSG00000027784.10, intron 1 of 3) 1782 ENSMUSG00000091315.1 ENSMUSG00000091315 ENSMUST00000164501 Gm17214 processed_pseudogene Interval_12653 chr10 4164884 4166189 + 0 NA intron (ENSMUSG00000040675.17, intron 27 of 27) protein_coding-intron (ENSMUSG00000040675.17, intron 27 of 27) -4351 ENSMUSG00000089473.1 ENSMUSG00000089473 ENSMUST00000158848 Gm25369 snoRNA Interval_117120 chr4 119684704 119685817 + 0 NA Intergenic Intergenic -26479 ENSMUSG00000032978.14 ENSMUSG00000032978 ENSMUST00000044426 Guca2b protein_coding Interval_97616 chr2 140670484 140671671 + 0 NA intron (ENSMUSG00000051379.12, intron 1 of 3) protein_coding-intron (ENSMUSG00000051379.12, intron 1 of 2) 373 ENSMUSG00000051379.12 ENSMUSG00000051379 ENSMUST00000056760 Flrt3 protein_coding Interval_2216 chr1 37100454 37102193 + 0 NA intron (ENSMUSG00000050122.19, intron 1 of 4) protein_coding-intron (ENSMUSG00000050122.19, intron 8 of 24) 31941 ENSMUSG00000103603.1 ENSMUSG00000103603 ENSMUST00000195303 Gm37020 antisense Interval_73490 chr17 37990171 37991356 + 0 NA Intergenic Intergenic 16119 ENSMUSG00000092213.1 ENSMUSG00000092213 ENSMUST00000173947 Gm18522 processed_pseudogene Interval_64169 chr16 8810139 8812141 + 0 NA Intergenic Intergenic -20181 ENSMUSG00000022507.6 ENSMUSG00000022507 ENSMUST00000229318 1810013L24Rik protein_coding Interval_82015 chr18 67212233 67213155 + 0 NA intron (ENSMUSG00000024524.17, intron 8 of 12) protein_coding-intron (ENSMUSG00000024524.17, intron 7 of 11) -6724 ENSMUSG00000117757.1 ENSMUSG00000117757 ENSMUST00000209359 Gm50169 antisense Interval_141441 chr6 128301812 128302197 + 0 NA Intergenic Intergenic -1266 ENSMUSG00000030353.15 ENSMUSG00000030353 ENSMUST00000143004 Tead4 protein_coding Interval_149080 chr7 92944311 92944511 + 0 NA Intergenic Intergenic -35465 ENSMUSG00000108994.1 ENSMUSG00000108994 ENSMUST00000207656 Gm31663 transcribed_unprocessed_pseudogene Interval_49621 chr13 113599977 113600575 + 0 NA intron (ENSMUSG00000042364.11, intron 1 of 1) protein_coding-intron (ENSMUSG00000042364.11, intron 1 of 1) 13738 ENSMUSG00000042364.11 ENSMUSG00000042364 ENSMUST00000224883 Snx18 protein_coding Interval_42537 chr13 14800449 14801150 + 0 NA Intergenic Intergenic -61201 ENSMUSG00000113686.1 ENSMUSG00000113686 ENSMUST00000221689 Gm19189 processed_pseudogene Interval_164218 chr9 32676237 32676802 + 0 NA intron (ENSMUSG00000032035.16, intron 3 of 9) protein_coding-intron (ENSMUSG00000032035.16, intron 3 of 3) 34652 ENSMUSG00000098843.1 ENSMUSG00000098843 ENSMUST00000183616 Gm27240 antisense Interval_64032 chr16 5734575 5734940 + 0 NA Intergenic Intergenic -240828 ENSMUSG00000101481.1 ENSMUSG00000101481 ENSMUST00000190515 1700123O21Rik sense_intronic Interval_170604 chr9 109201391 109201814 + 0 NA Intergenic Intergenic -5640 ENSMUSG00000049314.11 ENSMUSG00000049314 ENSMUST00000199102 Fbxw13 protein_coding Interval_6902 chr1 120544682 120544881 + 0 NA Intergenic Intergenic -40025 ENSMUSG00000026390.7 ENSMUSG00000026390 ENSMUST00000186432 Marco protein_coding Interval_151387 chr7 122009142 122009434 + 0 NA intron (ENSMUSG00000030872.14, intron 3 of 4) protein_coding-intron (ENSMUSG00000030872.14, intron 3 of 16) 11892 ENSMUSG00000030872.14 ENSMUSG00000030872 ENSMUST00000131081 Gga2 protein_coding Interval_19196 chr10 95433961 95434209 + 0 NA Intergenic Intergenic 16710 ENSMUSG00000097766.1 ENSMUSG00000097766 ENSMUST00000181781 5730420D15Rik bidirectional_promoter_lncRNA Interval_14549 chr10 35370042 35370342 + 0 NA Intergenic Intergenic 115204 ENSMUSG00000111753.1 ENSMUSG00000111753 ENSMUST00000214107 1700054O05Rik lincRNA Interval_153157 chr7 141934264 141934879 + 0 NA Intergenic Intergenic 14968 ENSMUSG00000092536.2 ENSMUSG00000092536 ENSMUST00000211303 Gm20501 bidirectional_promoter_lncRNA Interval_93766 chr2 76709930 76711234 + 0 NA exon (ENSMUSG00000051747.15, exon 186 of 191) protein_coding-exon (ENSMUSG00000051747.15, exon 186 of 191) -12194 ENSMUSG00000086354.2 ENSMUSG00000086354 ENSMUST00000156809 Gm13938 antisense Interval_84815 chr19 17015368 17017103 + 0 NA exon (ENSMUSG00000039126.10, exon 5 of 20) protein_coding-exon (ENSMUSG00000039126.10, exon 5 of 20) 40952 ENSMUSG00000098298.1 ENSMUSG00000098298 ENSMUST00000184854 Gm27970 misc_RNA Interval_92457 chr2 59828662 59830411 + 0 NA intron (ENSMUSG00000035168.16, intron 18 of 25) protein_coding-intron (ENSMUSG00000035168.16, intron 19 of 26) 23468 ENSMUSG00000035168.16 ENSMUSG00000035168 ENSMUST00000147650 Tanc1 protein_coding Interval_114470 chr4 80246970 80247502 + 0 NA Intergenic Intergenic -193162 ENSMUSG00000082555.1 ENSMUSG00000082555 ENSMUST00000117418 Gm11406 processed_pseudogene Interval_133702 chr6 8951095 8951695 + 0 NA exon (ENSMUSG00000046178.3, exon 3 of 3) protein_coding-exon (ENSMUSG00000046178.3, exon 3 of 3) 2964 ENSMUSG00000046178.3 ENSMUSG00000046178 ENSMUST00000060369 Nxph1 protein_coding Interval_154990 chr8 25534203 25535006 + 0 NA intron (ENSMUSG00000031565.18, intron 2 of 16) protein_coding-intron (ENSMUSG00000031565.18, intron 2 of 17) 18956 ENSMUSG00000086134.1 ENSMUSG00000086134 ENSMUST00000140451 Gm16159 antisense Interval_38777 chr12 82257843 82258225 + 0 NA intron (ENSMUSG00000042700.16, intron 1 of 21) protein_coding-intron (ENSMUSG00000042700.16, intron 2 of 22) 88558 ENSMUSG00000042700.16 ENSMUSG00000042700 ENSMUST00000221327 Sipa1l1 protein_coding Interval_70488 chr17 10666170 10666884 + 0 NA intron (ENSMUSG00000037196.6, intron 2 of 4) protein_coding-intron (ENSMUSG00000037196.6, intron 2 of 4) -35460 ENSMUSG00000037196.6 ENSMUSG00000037196 ENSMUST00000160599 Pacrg protein_coding Interval_156890 chr8 61503617 61503835 + 0 NA TTS (ENSMUSG00000031641.14) protein_coding-TTS (ENSMUSG00000031641.14) 12174 ENSMUSG00000058056.16 ENSMUSG00000058056 ENSMUST00000123523 Palld protein_coding Interval_27930 chr11 70954476 70955684 + 0 NA TTS (ENSMUSG00000040667.11) protein_coding-TTS (ENSMUSG00000040667.11) 1833 ENSMUSG00000040667.11 ENSMUSG00000040667 ENSMUST00000145336 Nup88 protein_coding Interval_51465 chr14 27749151 27749433 + 0 NA intron (ENSMUSG00000040640.11, intron 1 of 7) protein_coding-intron (ENSMUSG00000040640.11, intron 2 of 15) 34915 ENSMUSG00000114653.1 ENSMUSG00000114653 ENSMUST00000224481 Gm18398 processed_pseudogene Interval_153622 chr8 3960718 3961356 + 0 NA Intergenic Intergenic -14984 ENSMUSG00000040165.14 ENSMUSG00000040165 ENSMUST00000153915 Cd209c protein_coding Interval_69066 chr16 90400432 90402013 + 0 NA intron (ENSMUSG00000053414.8, intron 1 of 10) protein_coding-intron (ENSMUSG00000053414.8, intron 1 of 10) 678 ENSMUSG00000053414.8 ENSMUSG00000053414 ENSMUST00000231603 Hunk protein_coding Interval_100106 chr2 167101776 167102889 + 0 NA promoter-TSS (ENSMUSG00000050556.9) protein_coding-promoter-TSS (ENSMUSG00000050556.9) 8773 ENSMUSG00000083436.1 ENSMUSG00000083436 ENSMUST00000121824 Gm11471 processed_pseudogene Interval_91052 chr2 34701223 34701472 + 0 NA promoter-TSS (ENSMUSG00000026867.18) protein_coding-promoter-TSS (ENSMUSG00000026867.18) -248 ENSMUSG00000026867.18 ENSMUSG00000026867 ENSMUST00000142436 Gapvd1 protein_coding Interval_133203 chr5 150516804 150517754 + 0 NA intron (ENSMUSG00000056586.8, intron 1 of 3) protein_coding-intron (ENSMUSG00000056586.8, intron 1 of 3) 885 ENSMUSG00000056586.8 ENSMUSG00000056586 ENSMUST00000118769 Zar1l protein_coding Interval_79061 chr18 24232004 24232230 + 0 NA promoter-TSS (ENSMUSG00000000420.15) protein_coding-promoter-TSS (ENSMUSG00000000420.15) -480 ENSMUSG00000000420.15 ENSMUSG00000000420 ENSMUST00000170191 Galnt1 protein_coding Interval_144486 chr7 25409250 25409660 + 0 NA intron (ENSMUSG00000060188.6, intron 1 of 3) protein_coding-intron (ENSMUSG00000060188.6, intron 1 of 3) 3431 ENSMUSG00000060188.6 ENSMUSG00000060188 ENSMUST00000074040 Cxcl17 protein_coding Interval_72713 chr17 31698247 31699330 + 0 NA Intergenic Intergenic -8363 ENSMUSG00000117656.1 ENSMUSG00000117656 ENSMUST00000237283 Gm50225 lincRNA Interval_131540 chr5 137933494 137934630 + 0 NA Intergenic Intergenic 5787 ENSMUSG00000105787.1 ENSMUSG00000105787 ENSMUST00000200510 Gm8099 processed_pseudogene Interval_75866 chr17 72207569 72207857 + 0 NA intron (ENSMUSG00000055471.7, intron 3 of 4) protein_coding-intron (ENSMUSG00000055471.7, intron 3 of 28) -48545 ENSMUSG00000117046.1 ENSMUSG00000117046 ENSMUST00000233853 Gm19183 processed_pseudogene Interval_88275 chr2 3215804 3216031 + 0 NA intron (ENSMUSG00000050530.14, intron 5 of 7) protein_coding-intron (ENSMUSG00000050530.14, intron 5 of 7) -68364 ENSMUSG00000026643.16 ENSMUSG00000026643 ENSMUST00000155761 Nmt2 protein_coding Interval_136891 chr6 63128440 63129401 + 0 NA Intergenic Intergenic -31355 ENSMUSG00000107484.1 ENSMUSG00000107484 ENSMUST00000205050 Nasp-ps1 processed_pseudogene Interval_37931 chr12 73110359 73113902 + 0 NA intron (ENSMUSG00000034460.9, intron 2 of 2) protein_coding-intron (ENSMUSG00000034460.9, intron 1 of 2) 1326 ENSMUSG00000034460.9 ENSMUSG00000034460 ENSMUST00000175693 Six4 protein_coding Interval_142565 chr6 143323376 143324023 + 0 NA Intergenic Intergenic 77806 ENSMUSG00000072679.10 ENSMUSG00000072679 ENSMUST00000160951 D6Ertd474e lincRNA Interval_25712 chr11 50977364 50978257 + 0 NA exon (ENSMUSG00000082074.1, exon 1 of 1) processed_pseudogene-exon (ENSMUSG00000082074.1, exon 1 of 1) 1080 ENSMUSG00000082074.1 ENSMUSG00000082074 ENSMUST00000118780 Gm12661 processed_pseudogene Interval_158910 chr8 87880842 87881746 + 0 NA intron (ENSMUSG00000045333.15, intron 2 of 3) protein_coding-intron (ENSMUSG00000045333.15, intron 1 of 6) 72568 ENSMUSG00000045333.15 ENSMUSG00000045333 ENSMUST00000173092 Zfp423 protein_coding Interval_127833 chr5 108092912 108093216 + 0 NA intron (ENSMUSG00000029267.17, intron 8 of 15) protein_coding-intron (ENSMUSG00000029267.17, intron 7 of 14) 27347 ENSMUSG00000029267.17 ENSMUSG00000029267 ENSMUST00000129921 Mtf2 protein_coding Interval_126764 chr5 92728186 92728693 + 0 NA intron (ENSMUSG00000029381.16, intron 1 of 11) protein_coding-intron (ENSMUSG00000029381.16, intron 1 of 10) -7766 ENSMUSG00000092266.1 ENSMUSG00000092266 ENSMUST00000174621 Gm20500 sense_intronic Interval_10123 chr1 165935101 165935506 + 0 NA promoter-TSS (ENSMUSG00000026565.18) protein_coding-promoter-TSS (ENSMUSG00000026565.18) -6315 ENSMUSG00000099008.1 ENSMUSG00000099008 ENSMUST00000184037 Gm17976 processed_pseudogene Interval_44123 chr13 41028155 41029083 + 0 NA intron (ENSMUSG00000021363.14, intron 11 of 11) protein_coding-intron (ENSMUSG00000021363.14, intron 12 of 12) 11152 ENSMUSG00000021363.14 ENSMUSG00000021363 ENSMUST00000224423 Mak protein_coding Interval_118078 chr4 128811091 128812179 + 0 NA Intergenic Intergenic -5590 ENSMUSG00000028799.15 ENSMUSG00000028799 ENSMUST00000138371 Zfp362 protein_coding Interval_74572 chr17 53500981 53501367 + 0 NA promoter-TSS (ENSMUSG00000117128.1) antisense-promoter-TSS (ENSMUSG00000117128.1) -228 ENSMUSG00000117128.1 ENSMUSG00000117128 ENSMUST00000232747 Gm49915 antisense Interval_97164 chr2 131932427 131933033 + 0 NA intron (ENSMUSG00000098754.7, intron 2 of 3) protein_coding-intron (ENSMUSG00000079037.9, intron 2 of 2) -18132 ENSMUSG00000027338.16 ENSMUSG00000027338 ENSMUST00000110169 Prnd protein_coding Interval_68656 chr16 83650428 83650640 + 0 NA Intergenic Intergenic 85007 ENSMUSG00000116533.1 ENSMUSG00000116533 ENSMUST00000232058 Gm49561 processed_pseudogene Interval_15342 chr10 44837953 44838301 + 0 NA Intergenic Intergenic -14487 ENSMUSG00000111671.1 ENSMUSG00000111671 ENSMUST00000214912 Gm6983 processed_pseudogene Interval_58124 chr15 28158664 28159338 + 0 NA Intergenic Intergenic -3539 ENSMUSG00000115839.1 ENSMUSG00000115839 ENSMUST00000227452 Gm49233 lincRNA Interval_109930 chr3 151890016 151890721 + 0 NA intron (ENSMUSG00000104909.1, intron 1 of 3) lincRNA-intron (ENSMUSG00000104909.1, intron 1 of 3) 3065 ENSMUSG00000104909.1 ENSMUSG00000104909 ENSMUST00000196418 Gm43617 lincRNA Interval_116114 chr4 107844837 107846971 + 0 NA promoter-TSS (ENSMUSG00000028613.15) protein_coding-promoter-TSS (ENSMUSG00000028613.15) -15060 ENSMUSG00000028612.10 ENSMUSG00000028612 ENSMUST00000030352 Lrp8os1 antisense Interval_76470 chr17 80430755 80431208 + 0 NA intron (ENSMUSG00000024241.7, intron 10 of 19) protein_coding-intron (ENSMUSG00000024241.7, intron 10 of 21) 49472 ENSMUSG00000024241.7 ENSMUSG00000024241 ENSMUST00000234841 Sos1 protein_coding Interval_52529 chr14 47332007 47332805 + 0 NA Intergenic Intergenic -11350 ENSMUSG00000115728.1 ENSMUSG00000115728 ENSMUST00000227470 Gm49190 processed_pseudogene Interval_109498 chr3 142950292 142950693 + 0 NA Intergenic Intergenic -12119 ENSMUSG00000078162.6 ENSMUSG00000078162 ENSMUST00000181051 Gm2574 processed_pseudogene Interval_13119 chr10 11746649 11747844 + 0 NA Intergenic Intergenic 91649 ENSMUSG00000112233.1 ENSMUSG00000112233 ENSMUST00000219464 Gm48698 processed_pseudogene Interval_23092 chr11 19883745 19883964 + 0 NA Intergenic Intergenic -70716 ENSMUSG00000045671.17 ENSMUSG00000045671 ENSMUST00000123036 Spred2 protein_coding Interval_19388 chr10 98840054 98842189 + 0 NA Intergenic Intergenic -141411 ENSMUSG00000112647.1 ENSMUSG00000112647 ENSMUST00000217680 Gm5427 lincRNA Interval_170025 chr9 103750385 103752876 + 0 NA exon (ENSMUSG00000042757.16, exon 2 of 2) protein_coding-exon (ENSMUSG00000042757.16, exon 2 of 2) 10199 ENSMUSG00000042757.16 ENSMUSG00000042757 ENSMUST00000186455 Tmem108 protein_coding Interval_173453 chrX 94016789 94017757 + 0 NA Intergenic Intergenic -6587 ENSMUSG00000081055.1 ENSMUSG00000081055 ENSMUST00000119319 Gm6987 processed_pseudogene Interval_93519 chr2 73757957 73759988 + 0 NA intron (ENSMUSG00000056486.18, intron 1 of 9) protein_coding-intron (ENSMUSG00000056486.18, intron 1 of 12) -50190 ENSMUSG00000081062.1 ENSMUSG00000081062 ENSMUST00000118445 Gm13640 processed_pseudogene Interval_78134 chr18 9156452 9157331 + 0 NA Intergenic Intergenic -55272 ENSMUSG00000036904.6 ENSMUSG00000036904 ENSMUST00000041080 Fzd8 protein_coding Interval_27355 chr11 66919855 66920931 + 0 NA intron (ENSMUSG00000048070.4, intron 1 of 1) protein_coding-intron (ENSMUSG00000048070.4, intron 1 of 1) 8412 ENSMUSG00000048070.4 ENSMUSG00000048070 ENSMUST00000123434 Pirt protein_coding Interval_91962 chr2 52053079 52053964 + 0 NA intron (ENSMUSG00000053475.5, intron 5 of 5) protein_coding-intron (ENSMUSG00000053475.5, intron 5 of 5) 15512 ENSMUSG00000053475.5 ENSMUSG00000053475 ENSMUST00000065927 Tnfaip6 protein_coding Interval_94257 chr2 86974716 86974904 + 0 NA Intergenic Intergenic 5144 ENSMUSG00000070875.5 ENSMUSG00000070875 ENSMUST00000094913 Olfr1100 protein_coding Interval_93931 chr2 79528262 79529027 + 0 NA Intergenic Intergenic -71893 ENSMUSG00000034701.9 ENSMUSG00000034701 ENSMUST00000041099 Neurod1 protein_coding Interval_49396 chr13 111685751 111687760 + 0 NA promoter-TSS (ENSMUSG00000032727.14) protein_coding-promoter-TSS (ENSMUSG00000032727.14) 422 ENSMUSG00000032727.14 ENSMUSG00000032727 ENSMUST00000232398 Mier3 protein_coding Interval_44872 chr13 49258332 49259053 + 0 NA Intergenic Intergenic -18074 ENSMUSG00000021384.14 ENSMUSG00000021384 ENSMUST00000131880 Susd3 protein_coding Interval_103802 chr3 53100838 53101804 + 0 NA exon (ENSMUSG00000104735.1, exon 1 of 1) TEC-exon (ENSMUSG00000104735.1, exon 1 of 1) 2321 ENSMUSG00000104735.1 ENSMUSG00000104735 ENSMUST00000198178 C130075A20Rik TEC Interval_81002 chr18 52558861 52559394 + 0 NA intron (ENSMUSG00000118365.1, intron 1 of 2) antisense-intron (ENSMUSG00000118365.1, intron 1 of 2) -29260 ENSMUSG00000024529.14 ENSMUSG00000024529 ENSMUST00000171470 Lox protein_coding Interval_11699 chr1 184754267 184754572 + 0 NA Intergenic Intergenic 17442 ENSMUSG00000102158.1 ENSMUSG00000102158 ENSMUST00000192139 Gm34342 lincRNA Interval_58984 chr15 41329255 41330387 + 0 NA Intergenic Intergenic -86663 ENSMUSG00000116178.1 ENSMUSG00000116178 ENSMUST00000229823 Gm49529 processed_pseudogene Interval_125107 chr5 64512906 64513912 + 0 NA Intergenic Intergenic 36401 ENSMUSG00000105352.4 ENSMUSG00000105352 ENSMUST00000196829 C030018K13Rik lincRNA Interval_42359 chr13 12333823 12334311 + 0 NA intron (ENSMUSG00000052374.16, intron 2 of 21) protein_coding-intron (ENSMUSG00000052374.16, intron 1 of 20) -44091 ENSMUSG00000094185.2 ENSMUSG00000094185 ENSMUST00000180224 Gm5445 processed_pseudogene Interval_127575 chr5 105495058 105495751 + 0 NA promoter-TSS (ENSMUSG00000105826.1) TEC-promoter-TSS (ENSMUSG00000105826.1) -66 ENSMUSG00000105826.1 ENSMUSG00000105826 ENSMUST00000196534 Gm42141 TEC Interval_60179 chr15 67022787 67023093 + 0 NA Intergenic Intergenic -17118 ENSMUSG00000116289.1 ENSMUSG00000116289 ENSMUST00000230911 Gm31342 lincRNA Interval_14598 chr10 36857051 36857629 + 0 NA Intergenic Intergenic -81409 ENSMUSG00000088423.1 ENSMUSG00000088423 ENSMUST00000157798 Gm22554 snoRNA Interval_99621 chr2 163633053 163633322 + 0 NA intron (ENSMUSG00000017707.9, intron 4 of 9) protein_coding-intron (ENSMUSG00000017707.9, intron 4 of 9) -11663 ENSMUSG00000058812.2 ENSMUSG00000058812 ENSMUST00000184724 0610039K10Rik antisense Interval_53332 chr14 56314075 56315405 + 0 NA Intergenic Intergenic 38947 ENSMUSG00000114820.1 ENSMUSG00000114820 ENSMUST00000224940 Gm48200 processed_pseudogene Interval_90854 chr2 32981469 32983230 + 0 NA promoter-TSS (ENSMUSG00000026791.14) protein_coding-promoter-TSS (ENSMUSG00000026791.14) -278 ENSMUSG00000026791.14 ENSMUSG00000026791 ENSMUST00000123643 Slc2a8 protein_coding Interval_51839 chr14 32661279 32661526 + 0 NA exon (ENSMUSG00000071540.4, exon 4 of 4) protein_coding-exon (ENSMUSG00000071540.4, exon 4 of 4) 23891 ENSMUSG00000071540.4 ENSMUSG00000071540 ENSMUST00000226958 3425401B19Rik protein_coding Interval_165977 chr9 55136360 55138038 + 0 NA Intergenic Intergenic -41829 ENSMUSG00000110793.1 ENSMUSG00000110793 ENSMUST00000216059 Gm7395 processed_pseudogene Interval_111539 chr4 22699363 22700430 + 0 NA Intergenic Intergenic -4161 ENSMUSG00000080762.1 ENSMUSG00000080762 ENSMUST00000121885 Gm11879 processed_pseudogene Interval_150775 chr7 114294582 114295390 + 0 NA Intergenic Intergenic -18919 ENSMUSG00000030751.18 ENSMUSG00000030751 ENSMUST00000210966 Psma1 protein_coding Interval_37254 chr12 63112932 63114066 + 0 NA Intergenic Intergenic -40355 ENSMUSG00000058933.5 ENSMUSG00000058933 ENSMUST00000080271 Gm5185 processed_pseudogene Interval_104790 chr3 73379106 73380063 + 0 NA intron (ENSMUSG00000102362.1, intron 4 of 7) lincRNA-intron (ENSMUSG00000102820.1, intron 4 of 4) 50150 ENSMUSG00000102820.1 ENSMUSG00000102820 ENSMUST00000192351 Gm38353 lincRNA Interval_67038 chr16 41947070 41947248 + 0 NA intron (ENSMUSG00000061080.11, intron 4 of 8) protein_coding-intron (ENSMUSG00000061080.11, intron 2 of 5) 237758 ENSMUSG00000116841.1 ENSMUSG00000116841 ENSMUST00000232237 Gm49737 processed_pseudogene Interval_96874 chr2 129173127 129173824 + 0 NA intron (ENSMUSG00000084826.7, intron 1 of 1) antisense-intron (ENSMUSG00000084826.7, intron 1 of 1) 4775 ENSMUSG00000082274.1 ENSMUSG00000082274 ENSMUST00000120625 Gm14026 processed_pseudogene Interval_98064 chr2 147342395 147342595 + 0 NA Intergenic Intergenic -17408 ENSMUSG00000084774.1 ENSMUSG00000084774 ENSMUST00000127688 Gm14110 lincRNA Interval_55274 chr14 79906835 79907049 + 0 NA exon (ENSMUSG00000115190.1, exon 3 of 3) lincRNA-exon (ENSMUSG00000115190.1, exon 3 of 3) 8475 ENSMUSG00000115190.1 ENSMUSG00000115190 ENSMUST00000227349 Gm49542 lincRNA Interval_9148 chr1 154065901 154066393 + 0 NA intron (ENSMUSG00000100627.6, intron 3 of 3) lincRNA-intron (ENSMUSG00000100627.6, intron 2 of 2) 14052 ENSMUSG00000088669.1 ENSMUSG00000088669 ENSMUST00000158044 Gm25336 snoRNA Interval_98169 chr2 149198299 149198573 + 0 NA Intergenic Intergenic -58841 ENSMUSG00000086963.1 ENSMUSG00000086963 ENSMUST00000135438 Gm14135 lincRNA Interval_57245 chr15 8108455 8109622 + 0 NA promoter-TSS (ENSMUSG00000022142.8) protein_coding-promoter-TSS (ENSMUSG00000022142.8) -9829 ENSMUSG00000039828.7 ENSMUSG00000039828 ENSMUST00000227371 Wdr70 protein_coding Interval_125113 chr5 64598797 64599309 + 0 NA intron (ENSMUSG00000105402.4, intron 3 of 3) lincRNA-intron (ENSMUSG00000105402.4, intron 3 of 3) 11647 ENSMUSG00000105402.4 ENSMUSG00000105402 ENSMUST00000196283 Gm3716 lincRNA Interval_129866 chr5 122807523 122807727 + 0 NA promoter-TSS (ENSMUSG00000029472.13) protein_coding-promoter-TSS (ENSMUSG00000029472.13) 13669 ENSMUSG00000029472.13 ENSMUSG00000029472 ENSMUST00000197331 Anapc5 protein_coding Interval_108391 chr3 126571146 126571372 + 0 NA Intergenic Intergenic -25947 ENSMUSG00000053819.16 ENSMUSG00000053819 ENSMUST00000198637 Camk2d protein_coding Interval_93914 chr2 79211796 79212022 + 0 NA Intergenic Intergenic -43517 ENSMUSG00000027009.18 ENSMUSG00000027009 ENSMUST00000126312 Itga4 protein_coding Interval_164141 chr9 31950441 31950816 + 0 NA intron (ENSMUSG00000111771.1, intron 2 of 3) lincRNA-intron (ENSMUSG00000111771.1, intron 2 of 3) 2282 ENSMUSG00000111166.1 ENSMUSG00000111166 ENSMUST00000213734 Tpi-rs4 processed_pseudogene Interval_46366 chr13 64250304 64250564 + 0 NA intron (ENSMUSG00000097101.3, intron 1 of 2) protein_coding-intron (ENSMUSG00000033102.15, intron 1 of 13) 1706 ENSMUSG00000097101.3 ENSMUSG00000097101 ENSMUST00000189419 1810034E14Rik antisense Interval_3352 chr1 57359441 57359689 + 0 NA exon (ENSMUSG00000097519.2, exon 4 of 4) lincRNA-exon (ENSMUSG00000097519.2, exon 4 of 4) 17979 ENSMUSG00000097519.2 ENSMUSG00000097519 ENSMUST00000181949 4930558J18Rik lincRNA Interval_10411 chr1 170555100 170555369 + 0 NA intron (ENSMUSG00000038473.14, intron 1 of 7) protein_coding-intron (ENSMUSG00000038473.14, intron 1 of 3) -75687 ENSMUSG00000102193.1 ENSMUSG00000102193 ENSMUST00000194441 Gm7299 processed_pseudogene Interval_34949 chr12 15025954 15026592 + 0 NA intron (ENSMUSG00000113644.1, intron 2 of 7) lincRNA-intron (ENSMUSG00000113644.1, intron 2 of 4) -5629 ENSMUSG00000099215.1 ENSMUSG00000099215 ENSMUST00000183930 Gm27682 miRNA Interval_112020 chr4 33269525 33271368 + 0 NA intron (ENSMUSG00000040128.9, intron 1 of 1) protein_coding-intron (ENSMUSG00000040128.9, intron 1 of 1) -22871 ENSMUSG00000040128.9 ENSMUSG00000040128 ENSMUST00000137589 Pnrc1 protein_coding Interval_159555 chr8 95434232 95435267 + 0 NA promoter-TSS (ENSMUSG00000031796.7) protein_coding-promoter-TSS (ENSMUSG00000031796.7) 95 ENSMUSG00000031796.7 ENSMUSG00000031796 ENSMUST00000212131 Cfap20 protein_coding Interval_71708 chr17 25594209 25595301 + 0 NA intron (ENSMUSG00000002279.19, intron 3 of 4) protein_coding-intron (ENSMUSG00000002279.19, intron 2 of 10) 15435 ENSMUSG00000002279.19 ENSMUSG00000002279 ENSMUST00000156868 Lmf1 protein_coding Interval_10106 chr1 165844509 165846288 + 0 NA promoter-TSS (ENSMUSG00000102363.1) TEC-promoter-TSS (ENSMUSG00000102363.1) 687 ENSMUSG00000103768.1 ENSMUSG00000103768 ENSMUST00000191634 Gm37856 TEC Interval_10264 chr1 167669559 167670348 + 0 NA Intergenic Intergenic -19284 ENSMUSG00000026686.14 ENSMUSG00000026686 ENSMUST00000028003 Lmx1a protein_coding Interval_133719 chr6 9643514 9644365 + 0 NA Intergenic Intergenic 497173 ENSMUSG00000107851.1 ENSMUSG00000107851 ENSMUST00000203681 Gm35736 processed_pseudogene Interval_3946 chr1 64994203 64995421 + 0 NA promoter-TSS (ENSMUSG00000084416.3) processed_pseudogene-promoter-TSS (ENSMUSG00000084416.3) -208 ENSMUSG00000084416.3 ENSMUSG00000084416 ENSMUST00000120360 Rpl10a-ps1 processed_pseudogene Interval_144984 chr7 29271745 29272070 + 0 NA intron (ENSMUSG00000074227.12, intron 1 of 6) protein_coding-intron (ENSMUSG00000074227.12, intron 1 of 6) -6717 ENSMUSG00000074227.12 ENSMUSG00000074227 ENSMUST00000208585 Spint2 protein_coding Interval_75144 chr17 63936882 63938359 + 0 NA promoter-TSS (ENSMUSG00000000127.15) protein_coding-promoter-TSS (ENSMUSG00000000127.15) -73829 ENSMUSG00000045506.3 ENSMUSG00000045506 ENSMUST00000050753 A930002H24Rik protein_coding Interval_164371 chr9 36416370 36416574 + 0 NA Intergenic Intergenic -15412 ENSMUSG00000023093.7 ENSMUSG00000023093 ENSMUST00000041537 Pate12 protein_coding Interval_46426 chr13 65173991 65174516 + 0 NA Intergenic Intergenic 15995 ENSMUSG00000089161.1 ENSMUSG00000089161 ENSMUST00000158536 Gm24130 snoRNA Interval_113129 chr4 48539611 48541182 + 0 NA promoter-TSS (ENSMUSG00000039693.11) protein_coding-promoter-TSS (ENSMUSG00000039693.11) -150 ENSMUSG00000039693.11 ENSMUSG00000039693 ENSMUST00000132360 Msantd3 protein_coding Interval_46276 chr13 63313740 63314645 + 0 NA intron (ENSMUSG00000021461.17, intron 14 of 14) protein_coding-intron (ENSMUSG00000021461.17, intron 14 of 15) -12909 ENSMUSG00000092741.2 ENSMUSG00000092741 ENSMUST00000175000 Mir3074-1 miRNA Interval_28390 chr11 75581810 75582058 + 0 NA Intergenic Intergenic -6174 ENSMUSG00000017781.17 ENSMUSG00000017781 ENSMUST00000153768 Pitpna protein_coding Interval_124986 chr5 63347228 63347946 + 0 NA Intergenic Intergenic 303307 ENSMUSG00000104868.1 ENSMUSG00000104868 ENSMUST00000067917 Gm9954 TEC Interval_88023 chr19 58048120 58048406 + 0 NA intron (ENSMUSG00000054843.9, intron 28 of 28) protein_coding-intron (ENSMUSG00000054843.9, intron 28 of 28) -2904 ENSMUSG00000093757.1 ENSMUSG00000093757 ENSMUST00000176631 Mir5623 miRNA Interval_90880 chr2 33178335 33180478 + 0 NA intron (ENSMUSG00000085087.1, intron 1 of 1) protein_coding-intron (ENSMUSG00000038831.16, intron 7 of 16) 1504 ENSMUSG00000085087.1 ENSMUSG00000085087 ENSMUST00000139288 Gm13528 antisense Interval_112453 chr4 41362680 41363178 + 0 NA intron (ENSMUSG00000028437.14, intron 1 of 2) protein_coding-intron (ENSMUSG00000028437.14, intron 1 of 6) -8319 ENSMUSG00000028437.14 ENSMUSG00000028437 ENSMUST00000132235 Ubap1 protein_coding Interval_147304 chr7 65696618 65696924 + 0 NA intron (ENSMUSG00000078681.10, intron 3 of 3) protein_coding-intron (ENSMUSG00000078681.10, intron 2 of 4) 3295 ENSMUSG00000078681.10 ENSMUSG00000078681 ENSMUST00000206361 Tm2d3 protein_coding Interval_62066 chr15 86184916 86186333 + 0 NA promoter-TSS (ENSMUSG00000086424.1) antisense-promoter-TSS (ENSMUSG00000086424.1) -104 ENSMUSG00000086424.1 ENSMUSG00000086424 ENSMUST00000133675 Gm15569 antisense Interval_95481 chr2 109989918 109990119 + 0 NA intron (ENSMUSG00000050199.13, intron 3 of 5) protein_coding-intron (ENSMUSG00000050199.13, intron 3 of 17) 14476 ENSMUSG00000050199.13 ENSMUSG00000050199 ENSMUST00000142869 Lgr4 protein_coding Interval_7777 chr1 133617708 133619077 + 0 NA Intergenic Intergenic -8345 ENSMUSG00000090553.8 ENSMUSG00000090553 ENSMUST00000164574 Snrpe protein_coding Interval_158423 chr8 83639231 83639703 + 0 NA Intergenic Intergenic -13231 ENSMUSG00000019433.9 ENSMUSG00000019433 ENSMUST00000212463 Gipc1 protein_coding Interval_21840 chr11 4677196 4677487 + 0 NA intron (ENSMUSG00000020412.16, intron 15 of 19) protein_coding-intron (ENSMUSG00000020412.16, intron 15 of 19) 26993 ENSMUSG00000059534.8 ENSMUSG00000059534 ENSMUST00000130236 Uqcr10 protein_coding Interval_119280 chr4 136618755 136619602 + 0 NA Intergenic Intergenic -3443 ENSMUSG00000070683.7 ENSMUSG00000070683 ENSMUST00000178843 Lactbl1 protein_coding Interval_21202 chr10 127188377 127190863 + 0 NA promoter-TSS (ENSMUSG00000019467.15) protein_coding-promoter-TSS (ENSMUSG00000019467.15) 369 ENSMUSG00000019467.15 ENSMUSG00000019467 ENSMUST00000219245 Arhgef25 protein_coding Interval_24337 chr11 32510153 32511447 + 0 NA intron (ENSMUSG00000044949.4, intron 2 of 2) protein_coding-intron (ENSMUSG00000044949.4, intron 2 of 2) 21281 ENSMUSG00000044056.3 ENSMUSG00000044056 ENSMUST00000109377 Efcab9 protein_coding Interval_76916 chr17 84971901 84972631 + 0 NA intron (ENSMUSG00000061130.13, intron 1 of 7) protein_coding-intron (ENSMUSG00000061130.13, intron 1 of 5) -15027 ENSMUSG00000097047.2 ENSMUSG00000097047 ENSMUST00000181147 1110020A21Rik bidirectional_promoter_lncRNA Interval_21449 chr10 128668650 128669731 + 0 NA TTS (ENSMUSG00000049858.8) protein_coding-TTS (ENSMUSG00000049858.8) 168 ENSMUSG00000002578.18 ENSMUSG00000002578 ENSMUST00000221022 Ikzf4 protein_coding Interval_101679 chr3 8890007 8890360 + 0 NA intron (ENSMUSG00000040269.5, intron 2 of 2) protein_coding-intron (ENSMUSG00000040269.5, intron 2 of 2) -7613 ENSMUSG00000081657.1 ENSMUSG00000081657 ENSMUST00000122299 Gm15466 processed_pseudogene Interval_126534 chr5 89866220 89866868 + 0 NA intron (ENSMUSG00000043635.12, intron 2 of 3) protein_coding-intron (ENSMUSG00000043635.12, intron 2 of 21) 16790 ENSMUSG00000043635.12 ENSMUSG00000043635 ENSMUST00000196507 Adamts3 protein_coding Interval_127393 chr5 103699389 103699809 + 0 NA intron (ENSMUSG00000029313.18, intron 1 of 6) protein_coding-intron (ENSMUSG00000029313.18, intron 1 of 6) 41362 ENSMUSG00000088121.1 ENSMUSG00000088121 ENSMUST00000157496 Gm25721 snRNA Interval_127445 chr5 103993745 103994376 + 0 NA intron (ENSMUSG00000029311.16, intron 5 of 6) protein_coding-intron (ENSMUSG00000029311.16, intron 5 of 6) 4690 ENSMUSG00000082527.1 ENSMUSG00000082527 ENSMUST00000122390 Gm8200 processed_pseudogene Interval_151011 chr7 117686101 117687040 + 0 NA Intergenic Intergenic -90224 ENSMUSG00000088116.1 ENSMUSG00000088116 ENSMUST00000157491 Gm24063 miRNA Interval_135430 chr6 39330911 39331241 + 0 NA Intergenic Intergenic 46581 ENSMUSG00000029924.12 ENSMUSG00000029924 ENSMUST00000202785 Slc37a3 protein_coding Interval_10318 chr1 168720381 168721028 + 0 NA Intergenic Intergenic -44822 ENSMUSG00000103463.1 ENSMUSG00000103463 ENSMUST00000194611 1700063I16Rik TEC Interval_16643 chr10 66771896 66772359 + 0 NA Intergenic Intergenic 12673 ENSMUSG00000112383.1 ENSMUSG00000112383 ENSMUST00000220363 Gm47895 lincRNA Interval_74303 chr17 48680101 48681248 + 0 NA Intergenic Intergenic 12033 ENSMUSG00000088483.1 ENSMUSG00000088483 ENSMUST00000157858 Gm23642 misc_RNA Interval_124489 chr5 48870056 48870251 + 0 NA intron (ENSMUSG00000029088.16, intron 1 of 8) protein_coding-intron (ENSMUSG00000029088.16, intron 1 of 8) 19404 ENSMUSG00000029088.16 ENSMUSG00000029088 ENSMUST00000101214 Kcnip4 protein_coding Interval_63181 chr15 99595881 99596784 + 0 NA Intergenic Intergenic -5068 ENSMUSG00000043144.6 ENSMUSG00000043144 ENSMUST00000023754 Aqp6 protein_coding Interval_23778 chr11 26130854 26131379 + 0 NA intron (ENSMUSG00000032985.15, intron 1 of 1) protein_coding-intron (ENSMUSG00000032985.15, intron 1 of 6) -71124 ENSMUSG00000099015.1 ENSMUSG00000099015 ENSMUST00000185114 Mir6372 miRNA Interval_122828 chr5 25839208 25839695 + 0 NA intron (ENSMUSG00000056367.14, intron 8 of 10) protein_coding-intron (ENSMUSG00000056367.14, intron 9 of 11) 79412 ENSMUSG00000056367.14 ENSMUSG00000056367 ENSMUST00000198693 Actr3b protein_coding Interval_144807 chr7 28371619 28373476 + 0 NA promoter-TSS (ENSMUSG00000037552.17) protein_coding-promoter-TSS (ENSMUSG00000037552.17) -467 ENSMUSG00000037552.17 ENSMUSG00000037552 ENSMUST00000147887 Plekhg2 protein_coding Interval_75328 chr17 65884240 65885624 + 0 NA promoter-TSS (ENSMUSG00000024096.17) protein_coding-promoter-TSS (ENSMUSG00000024096.17) -529 ENSMUSG00000024096.17 ENSMUSG00000024096 ENSMUST00000233784 Ralbp1 protein_coding Interval_110994 chr4 11086540 11086928 + 0 NA Intergenic Intergenic -10551 ENSMUSG00000050323.14 ENSMUSG00000050323 ENSMUST00000141019 Ndufaf6 protein_coding Interval_108517 chr3 127895696 127896703 + 0 NA promoter-TSS (ENSMUSG00000050549.8) protein_coding-promoter-TSS (ENSMUSG00000050549.8) 125 ENSMUSG00000050549.8 ENSMUSG00000050549 ENSMUST00000057198 Fam241a protein_coding Interval_143149 chr7 3677112 3677564 + 0 NA promoter-TSS (ENSMUSG00000019734.16) protein_coding-promoter-TSS (ENSMUSG00000019734.16) -711 ENSMUSG00000019734.16 ENSMUSG00000019734 ENSMUST00000130689 Tmc4 protein_coding Interval_142669 chr6 144933377 144934447 + 0 NA Intergenic Intergenic 104276 ENSMUSG00000088867.1 ENSMUSG00000088867 ENSMUST00000158242 Gm23071 rRNA Interval_138795 chr6 91942223 91943050 + 0 NA intron (ENSMUSG00000034063.8, intron 15 of 19) protein_coding-intron (ENSMUSG00000034063.8, intron 12 of 16) -3123 ENSMUSG00000108625.1 ENSMUSG00000108625 ENSMUST00000205414 Gm44711 TEC Interval_104366 chr3 64233549 64234323 + 0 NA Intergenic Intergenic -20259 ENSMUSG00000093416.1 ENSMUSG00000093416 ENSMUST00000176980 Gm18294 unprocessed_pseudogene Interval_34840 chr12 12467333 12467769 + 0 NA Intergenic Intergenic -74936 ENSMUSG00000114136.1 ENSMUSG00000114136 ENSMUST00000220545 4921511I17Rik antisense Interval_157582 chr8 71530672 71531677 + 0 NA Intergenic Intergenic -5463 ENSMUSG00000108900.1 ENSMUSG00000108900 ENSMUST00000207913 Ccdc194 protein_coding Interval_54399 chr14 68450785 68451490 + 0 NA Intergenic Intergenic -10494 ENSMUSG00000114396.1 ENSMUSG00000114396 ENSMUST00000225482 Gm31227 lincRNA Interval_122559 chr5 23800436 23800791 + 0 NA exon (ENSMUSG00000028999.15, exon 4 of 15) protein_coding-exon (ENSMUSG00000028999.15, exon 4 of 15) 9911 ENSMUSG00000104569.1 ENSMUSG00000104569 ENSMUST00000199495 Gm43054 TEC Interval_127890 chr5 108649424 108649782 + 0 NA TTS (ENSMUSG00000013495.15) protein_coding-TTS (ENSMUSG00000013495.15) 5530 ENSMUSG00000004815.12 ENSMUSG00000004815 ENSMUST00000139598 Dgkq protein_coding Interval_130487 chr5 128262543 128262928 + 0 NA intron (ENSMUSG00000034310.8, intron 2 of 8) protein_coding-intron (ENSMUSG00000034310.8, intron 2 of 8) 13082 ENSMUSG00000034310.8 ENSMUSG00000034310 ENSMUST00000200316 Tmem132d protein_coding Interval_165553 chr9 49426749 49427023 + 0 NA exon (ENSMUSG00000032257.6, exon 1 of 8) protein_coding-exon (ENSMUSG00000032257.6, exon 1 of 8) -7450 ENSMUSG00000032257.6 ENSMUSG00000032257 ENSMUST00000216227 Ankk1 protein_coding Interval_132601 chr5 146661489 146662298 + 0 NA Intergenic Intergenic -44729 ENSMUSG00000106020.1 ENSMUSG00000106020 ENSMUST00000197707 4930573C15Rik lincRNA Interval_144916 chr7 28918917 28920114 + 0 NA promoter-TSS (ENSMUSG00000054808.15) protein_coding-promoter-TSS (ENSMUSG00000054808.15) 24013 ENSMUSG00000109314.1 ENSMUSG00000109314 ENSMUST00000208229 Gm44699 sense_intronic Interval_148937 chr7 90185722 90186003 + 0 NA promoter-TSS (ENSMUSG00000109005.1) TEC-promoter-TSS (ENSMUSG00000109005.1) -65 ENSMUSG00000109005.1 ENSMUSG00000109005 ENSMUST00000207822 Gm45221 TEC Interval_144731 chr7 27838109 27841053 + 0 NA intron (ENSMUSG00000078779.4, intron 1 of 4) protein_coding-intron (ENSMUSG00000078779.4, intron 1 of 4) 974 ENSMUSG00000078779.4 ENSMUSG00000078779 ENSMUST00000108331 Zfp59 protein_coding Interval_104265 chr3 62395163 62395952 + 0 NA intron (ENSMUSG00000036885.14, intron 5 of 13) protein_coding-intron (ENSMUSG00000036885.14, intron 5 of 13) -31623 ENSMUSG00000036885.14 ENSMUSG00000036885 ENSMUST00000192138 Arhgef26 protein_coding Interval_93980 chr2 80446267 80448610 + 0 NA exon (ENSMUSG00000027004.3, exon 1 of 6) protein_coding-exon (ENSMUSG00000027004.3, exon 1 of 6) -8808 ENSMUSG00000027004.3 ENSMUSG00000027004 ENSMUST00000142459 Frzb protein_coding Interval_149531 chr7 99374358 99375699 + 0 NA Intergenic Intergenic -21925 ENSMUSG00000070436.12 ENSMUSG00000070436 ENSMUST00000208292 Serpinh1 protein_coding Interval_112690 chr4 44104281 44104825 + 0 NA intron (ENSMUSG00000087326.1, intron 1 of 1) processed_transcript-intron (ENSMUSG00000087326.1, intron 1 of 1) 11921 ENSMUSG00000087326.1 ENSMUSG00000087326 ENSMUST00000146576 Gm12503 processed_transcript Interval_77199 chr17 87313175 87313501 + 0 NA intron (ENSMUSG00000036918.16, intron 1 of 5) protein_coding-intron (ENSMUSG00000036918.16, intron 5 of 19) 18714 ENSMUSG00000089701.1 ENSMUSG00000089701 ENSMUST00000161043 Gm15978 antisense Interval_150057 chr7 105453716 105453940 + 0 NA intron (ENSMUSG00000030898.15, intron 4 of 4) protein_coding-intron (ENSMUSG00000030898.15, intron 4 of 4) 28011 ENSMUSG00000030898.15 ENSMUSG00000030898 ENSMUST00000181339 Cckbr protein_coding Interval_115627 chr4 101467721 101469349 + 0 NA Intergenic Intergenic 21312 ENSMUSG00000028527.18 ENSMUSG00000028527 ENSMUST00000155749 Ak4 protein_coding Interval_69434 chr16 93437699 93438693 + 0 NA intron (ENSMUSG00000099968.7, intron 1 of 1) lincRNA-intron (ENSMUSG00000099968.7, intron 1 of 2) 20609 ENSMUSG00000099968.7 ENSMUSG00000099968 ENSMUST00000231859 1700029J03Rik lincRNA Interval_111517 chr4 22365223 22365686 + 0 NA intron (ENSMUSG00000040410.14, intron 1 of 8) protein_coding-intron (ENSMUSG00000040410.14, intron 1 of 8) 7894 ENSMUSG00000040410.14 ENSMUSG00000040410 ENSMUST00000184582 Fbxl4 protein_coding Interval_100241 chr2 167887558 167888163 + 0 NA Intergenic Intergenic 29275 ENSMUSG00000085411.1 ENSMUSG00000085411 ENSMUST00000142937 Gm14319 lincRNA Interval_155334 chr8 31573606 31574555 + 0 NA Intergenic Intergenic -29394 ENSMUSG00000088162.1 ENSMUSG00000088162 ENSMUST00000157537 Gm23539 misc_RNA Interval_167724 chr9 72292523 72293381 + 0 NA exon (ENSMUSG00000098893.1, exon 1 of 1) processed_pseudogene-exon (ENSMUSG00000098893.1, exon 1 of 1) 388 ENSMUSG00000098893.1 ENSMUSG00000098893 ENSMUST00000183380 Gm17828 processed_pseudogene Interval_173079 chrX 70860301 70860736 + 0 NA Intergenic Intergenic 89651 ENSMUSG00000083406.1 ENSMUSG00000083406 ENSMUST00000117225 Gm8410 processed_pseudogene Interval_98474 chr2 152671529 152672137 + 0 NA intron (ENSMUSG00000019188.16, intron 1 of 2) protein_coding-intron (ENSMUSG00000019188.16, intron 1 of 10) 2347 ENSMUSG00000019188.16 ENSMUSG00000019188 ENSMUST00000129439 H13 protein_coding Interval_144981 chr7 29246996 29249015 + 0 NA TTS (ENSMUSG00000030588.12) protein_coding-TTS (ENSMUSG00000030588.12) 333 ENSMUSG00000030587.5 ENSMUSG00000030587 ENSMUST00000151339 2200002D01Rik protein_coding Interval_106019 chr3 90664170 90664729 + 0 NA Intergenic Intergenic -4862 ENSMUSG00000056054.9 ENSMUSG00000056054 ENSMUST00000198156 S100a8 protein_coding Interval_157813 chr8 73849212 73849766 + 0 NA Intergenic Intergenic -22204 ENSMUSG00000110609.1 ENSMUSG00000110609 ENSMUST00000212607 Gm7948 processed_pseudogene Interval_26484 chr11 58103389 58104774 + 0 NA promoter-TSS (ENSMUSG00000020515.13) protein_coding-promoter-TSS (ENSMUSG00000020515.13) -285 ENSMUSG00000020515.13 ENSMUSG00000020515 ENSMUST00000133923 Cnot8 protein_coding Interval_60096 chr15 65435087 65435297 + 0 NA Intergenic Intergenic -234630 ENSMUSG00000115066.1 ENSMUSG00000115066 ENSMUST00000227626 Gm49242 processed_pseudogene Interval_128176 chr5 111531190 111531839 + 0 NA Intergenic Intergenic -50047 ENSMUSG00000052848.7 ENSMUSG00000052848 ENSMUST00000198458 C130026L21Rik lincRNA Interval_158582 chr8 84621137 84621445 + 0 NA intron (ENSMUSG00000034656.18, intron 40 of 48) protein_coding-intron (ENSMUSG00000034656.18, intron 38 of 46) -4107 ENSMUSG00000086067.1 ENSMUSG00000086067 ENSMUST00000127527 Gm16183 antisense Interval_77090 chr17 86458499 86458866 + 0 NA intron (ENSMUSG00000045038.14, intron 2 of 14) protein_coding-intron (ENSMUSG00000045038.14, intron 3 of 15) -31880 ENSMUSG00000045038.14 ENSMUSG00000045038 ENSMUST00000136986 Prkce protein_coding Interval_49717 chr13 114227917 114228705 + 0 NA intron (ENSMUSG00000104314.1, intron 1 of 1) TEC-intron (ENSMUSG00000104314.1, intron 1 of 1) 1200 ENSMUSG00000104314.1 ENSMUSG00000104314 ENSMUST00000195644 Gm37907 TEC Interval_128007 chr5 110253928 110255058 + 0 NA exon (ENSMUSG00000029501.14, exon 13 of 13) protein_coding-exon (ENSMUSG00000029501.14, exon 13 of 13) -7668 ENSMUSG00000087439.1 ENSMUSG00000087439 ENSMUST00000130123 Gm15788 antisense Interval_172356 chrX 13393443 13393713 + 0 NA Intergenic Intergenic -14900 ENSMUSG00000080818.4 ENSMUSG00000080818 ENSMUST00000118975 Gm9434 processed_pseudogene Interval_37603 chr12 70226855 70228108 + 0 NA promoter-TSS (ENSMUSG00000085298.2) lincRNA-promoter-TSS (ENSMUSG00000085298.2) -360 ENSMUSG00000085298.2 ENSMUSG00000085298 ENSMUST00000145871 F730035M05Rik lincRNA Interval_115290 chr4 95389434 95390139 + 0 NA Intergenic Intergenic 13004 ENSMUSG00000100129.1 ENSMUSG00000100129 ENSMUST00000187014 Gm29064 lincRNA Interval_106764 chr3 100547314 100548226 + 0 NA Intergenic Intergenic 39757 ENSMUSG00000105824.1 ENSMUSG00000105824 ENSMUST00000197836 Gm43466 sense_intronic Interval_2557 chr1 40324513 40326458 + 0 NA promoter-TSS (ENSMUSG00000070942.8) protein_coding-promoter-TSS (ENSMUSG00000070942.8) 795 ENSMUSG00000070942.8 ENSMUSG00000070942 ENSMUST00000193388 Il1rl2 protein_coding Interval_173971 chrX 119508687 119509760 + 0 NA Intergenic Intergenic 17436 ENSMUSG00000088313.1 ENSMUSG00000088313 ENSMUST00000157688 Gm26182 snoRNA Interval_81107 chr18 53922100 53922646 + 0 NA intron (ENSMUSG00000073563.3, intron 6 of 12) protein_coding-intron (ENSMUSG00000073563.3, intron 6 of 12) 60185 ENSMUSG00000073563.3 ENSMUSG00000073563 ENSMUST00000236399 Csnk1g3 protein_coding Interval_107096 chr3 103500873 103501561 + 0 NA Intergenic Intergenic -55417 ENSMUSG00000065029.1 ENSMUSG00000065029 ENSMUST00000083095 Gm25199 snRNA Interval_9623 chr1 160378442 160380470 + 0 NA intron (ENSMUSG00000026721.16, intron 2 of 6) protein_coding-intron (ENSMUSG00000026721.16, intron 18 of 20) -52378 ENSMUSG00000103693.1 ENSMUSG00000103693 ENSMUST00000195618 Gm37529 sense_intronic Interval_127752 chr5 107372637 107372850 + 0 NA intron (ENSMUSG00000029279.15, intron 3 of 5) protein_coding-intron (ENSMUSG00000029279.15, intron 15 of 18) 9274 ENSMUSG00000081798.1 ENSMUSG00000081798 ENSMUST00000120842 Gm8152 processed_pseudogene Interval_47778 chr13 92685525 92685831 + 0 NA exon (ENSMUSG00000021703.9, exon 5 of 5) protein_coding-exon (ENSMUSG00000021703.9, exon 5 of 5) -20104 ENSMUSG00000021703.9 ENSMUSG00000021703 ENSMUST00000224458 Serinc5 protein_coding Interval_121250 chr4 154406967 154407230 + 0 NA intron (ENSMUSG00000039410.16, intron 3 of 15) protein_coding-intron (ENSMUSG00000039410.16, intron 3 of 16) 70971 ENSMUSG00000097871.1 ENSMUSG00000097871 ENSMUST00000181143 B230104I21Rik lincRNA Interval_6558 chr1 116477728 116477927 + 0 NA intron (ENSMUSG00000070695.4, intron 19 of 23) protein_coding-intron (ENSMUSG00000070695.4, intron 19 of 23) -83414 ENSMUSG00000092948.1 ENSMUSG00000092948 ENSMUST00000175207 Gm23393 miRNA Interval_152355 chr7 132247407 132248072 + 0 NA intron (ENSMUSG00000030930.14, intron 6 of 7) protein_coding-intron (ENSMUSG00000030930.14, intron 6 of 7) 66339 ENSMUSG00000109555.1 ENSMUSG00000109555 ENSMUST00000208817 Gm44891 TEC Interval_173162 chrX 73687490 73687686 + 0 NA intron (ENSMUSG00000002015.5, intron 7 of 7) protein_coding-intron (ENSMUSG00000002015.5, intron 7 of 7) 12081 ENSMUSG00000019558.14 ENSMUSG00000019558 ENSMUST00000167828 Slc6a8 protein_coding Interval_44070 chr13 40714411 40715133 + 0 NA TTS (ENSMUSG00000021359.16) protein_coding-TTS (ENSMUSG00000021359.16) -8338 ENSMUSG00000114936.1 ENSMUSG00000114936 ENSMUST00000224038 Gm47061 antisense Interval_150268 chr7 109139020 109139813 + 0 NA intron (ENSMUSG00000036111.8, intron 3 of 3) protein_coding-intron (ENSMUSG00000036111.8, intron 3 of 3) -3471 ENSMUSG00000109107.1 ENSMUSG00000109107 ENSMUST00000208480 Gm44781 antisense Interval_152722 chr7 136863951 136864171 + 0 NA Intergenic Intergenic -30553 ENSMUSG00000054612.4 ENSMUSG00000054612 ENSMUST00000081510 Mgmt protein_coding Interval_58824 chr15 38339374 38339586 + 0 NA intron (ENSMUSG00000115456.1, intron 2 of 2) lincRNA-intron (ENSMUSG00000115456.1, intron 2 of 2) 27187 ENSMUSG00000115456.1 ENSMUSG00000115456 ENSMUST00000227097 Gm35248 lincRNA Interval_98276 chr2 150749611 150751560 + 0 NA intron (ENSMUSG00000033068.16, intron 1 of 5) protein_coding-intron (ENSMUSG00000033068.16, intron 1 of 13) 1504 ENSMUSG00000033068.16 ENSMUSG00000033068 ENSMUST00000139723 Entpd6 protein_coding Interval_132053 chr5 142502305 142502989 + 0 NA intron (ENSMUSG00000029576.17, intron 5 of 13) protein_coding-intron (ENSMUSG00000029576.17, intron 5 of 14) -15078 ENSMUSG00000029576.17 ENSMUSG00000029576 ENSMUST00000129212 Radil protein_coding Interval_161009 chr8 116886998 116887249 + 0 NA Intergenic Intergenic 7401 ENSMUSG00000014633.15 ENSMUSG00000014633 ENSMUST00000128304 Cmc2 protein_coding Interval_123210 chr5 30666475 30668427 + 0 NA exon (ENSMUSG00000029177.9, exon 1 of 1) protein_coding-exon (ENSMUSG00000029177.9, exon 1 of 1) 453 ENSMUSG00000029177.9 ENSMUSG00000029177 ENSMUST00000134372 Cenpa protein_coding Interval_157369 chr8 69910228 69910917 + 0 NA intron (ENSMUSG00000036180.15, intron 12 of 12) protein_coding-intron (ENSMUSG00000036180.15, intron 12 of 12) -7860 ENSMUSG00000048967.16 ENSMUSG00000048967 ENSMUST00000152456 Yjefn3 protein_coding Interval_135704 chr6 43711869 43712372 + 0 NA Intergenic Intergenic 55190 ENSMUSG00000107465.1 ENSMUSG00000107465 ENSMUST00000203126 Gm5990 processed_pseudogene Interval_30638 chr11 95598135 95598745 + 0 NA Intergenic Intergenic -10705 ENSMUSG00000000120.6 ENSMUSG00000000120 ENSMUST00000000122 Ngfr protein_coding Interval_129387 chr5 119662881 119664203 + 0 NA intron (ENSMUSG00000087516.7, intron 1 of 2) antisense-intron (ENSMUSG00000087516.7, intron 1 of 2) -7127 ENSMUSG00000018604.18 ENSMUSG00000018604 ENSMUST00000154680 Tbx3 protein_coding Interval_167590 chr9 70841443 70842538 + 0 NA intron (ENSMUSG00000032207.10, intron 1 of 8) protein_coding-intron (ENSMUSG00000032207.10, intron 1 of 8) -10586 ENSMUSG00000096160.2 ENSMUSG00000096160 ENSMUST00000179930 Gm3436 processed_pseudogene Interval_79871 chr18 35670991 35672056 + 0 NA exon (ENSMUSG00000024350.6, exon 8 of 8) protein_coding-exon (ENSMUSG00000024350.6, exon 8 of 8) -9360 ENSMUSG00000117874.1 ENSMUSG00000117874 ENSMUST00000235292 Gm50318 protein_coding Interval_153765 chr8 7892767 7893331 + 0 NA Intergenic Intergenic 35173 ENSMUSG00000099890.2 ENSMUSG00000099890 ENSMUST00000192596 Gm28262 processed_transcript Interval_19920 chr10 111209998 111210717 + 0 NA intron (ENSMUSG00000020189.15, intron 2 of 22) protein_coding-intron (ENSMUSG00000020189.15, intron 2 of 22) 30405 ENSMUSG00000112642.1 ENSMUSG00000112642 ENSMUST00000219788 Gm17849 processed_pseudogene Interval_37900 chr12 72924197 72924408 + 0 NA intron (ENSMUSG00000021098.14, intron 3 of 5) protein_coding-intron (ENSMUSG00000021098.14, intron 1 of 4) -15590 ENSMUSG00000021099.6 ENSMUSG00000021099 ENSMUST00000021519 Six6 protein_coding Interval_74381 chr17 49767376 49767643 + 0 NA intron (ENSMUSG00000023999.14, intron 13 of 22) protein_coding-intron (ENSMUSG00000023999.14, intron 13 of 22) 54316 ENSMUSG00000090012.1 ENSMUSG00000090012 ENSMUST00000159971 Gm16555 antisense Interval_25305 chr11 46218453 46219209 + 0 NA intron (ENSMUSG00000020340.16, intron 26 of 30) protein_coding-intron (ENSMUSG00000020340.16, intron 26 of 30) -16700 ENSMUSG00000048721.2 ENSMUSG00000048721 ENSMUST00000060185 Fndc9 protein_coding Interval_143789 chr7 16313560 16314586 + 0 NA TTS (ENSMUSG00000002083.13) protein_coding-TTS (ENSMUSG00000002083.13) 5680 ENSMUSG00000002083.13 ENSMUSG00000002083 ENSMUST00000147267 Bbc3 protein_coding Interval_17049 chr10 70865683 70866535 + 0 NA intron (ENSMUSG00000112125.1, intron 2 of 2) lincRNA-intron (ENSMUSG00000112125.1, intron 2 of 2) 2343 ENSMUSG00000112125.1 ENSMUSG00000112125 ENSMUST00000219293 Gm48024 lincRNA Interval_74102 chr17 46576187 46576843 + 0 NA exon (ENSMUSG00000023972.10, exon 12 of 20) protein_coding-exon (ENSMUSG00000023972.10, exon 12 of 20) -3565 ENSMUSG00000023972.10 ENSMUSG00000023972 ENSMUST00000044442 Ptk7 protein_coding Interval_75936 chr17 73229506 73230524 + 0 NA intron (ENSMUSG00000054469.14, intron 1 of 1) protein_coding-intron (ENSMUSG00000054469.14, intron 5 of 5) -22530 ENSMUSG00000117292.1 ENSMUSG00000117292 ENSMUST00000233479 E330032C10Rik lincRNA Interval_8519 chr1 140543097 140544314 + 0 NA intron (ENSMUSG00000052726.16, intron 21 of 27) protein_coding-intron (ENSMUSG00000052726.16, intron 19 of 26) 112699 ENSMUSG00000102368.1 ENSMUSG00000102368 ENSMUST00000193820 4930590L20Rik antisense Interval_12790 chr10 5420212 5420423 + 0 NA intron (ENSMUSG00000096054.3, intron 9 of 145) protein_coding-intron (ENSMUSG00000096054.3, intron 9 of 31) 63144 ENSMUSG00000094906.1 ENSMUSG00000094906 ENSMUST00000104408 Gm23573 snRNA Interval_155565 chr8 34617802 34618922 + 0 NA intron (ENSMUSG00000109880.1, intron 2 of 2) lincRNA-intron (ENSMUSG00000109880.1, intron 2 of 2) 10057 ENSMUSG00000109880.1 ENSMUSG00000109880 ENSMUST00000211296 Gm34096 lincRNA Interval_34723 chr12 8939707 8942180 + 0 NA Intergenic Intergenic -6986 ENSMUSG00000020583.4 ENSMUSG00000020583 ENSMUST00000020899 Matn3 protein_coding Interval_26959 chr11 61854073 61855567 + 0 NA promoter-TSS (ENSMUSG00000004798.14) protein_coding-promoter-TSS (ENSMUSG00000004798.14) -10655 ENSMUSG00000098196.1 ENSMUSG00000098196 ENSMUST00000182516 Gm26964 lincRNA Interval_1202 chr1 16996761 16997232 + 0 NA exon (ENSMUSG00000042686.5, exon 5 of 5) protein_coding-exon (ENSMUSG00000042686.5, exon 5 of 5) 7223 ENSMUSG00000042686.5 ENSMUSG00000042686 ENSMUST00000038382 Jph1 protein_coding Interval_65944 chr16 30425627 30426653 + 0 NA Intergenic Intergenic -26448 ENSMUSG00000116960.1 ENSMUSG00000116960 ENSMUST00000231864 Gm49679 processed_pseudogene Interval_18506 chr10 86796449 86797480 + 0 NA intron (ENSMUSG00000054027.8, intron 1 of 13) protein_coding-intron (ENSMUSG00000054027.8, intron 1 of 13) -28139 ENSMUSG00000054027.8 ENSMUSG00000054027 ENSMUST00000218792 Nt5dc3 protein_coding Interval_91134 chr2 35367677 35367999 + 0 NA promoter-TSS (ENSMUSG00000026882.1) protein_coding-promoter-TSS (ENSMUSG00000026882.1) -109 ENSMUSG00000026882.1 ENSMUSG00000026882 ENSMUST00000028243 4930568D16Rik protein_coding Interval_154991 chr8 25535986 25537821 + 0 NA intron (ENSMUSG00000031565.18, intron 2 of 16) protein_coding-intron (ENSMUSG00000031565.18, intron 2 of 17) 16657 ENSMUSG00000086134.1 ENSMUSG00000086134 ENSMUST00000140451 Gm16159 antisense Interval_64099 chr16 8287278 8287527 + 0 NA Intergenic Intergenic -49591 ENSMUSG00000089593.1 ENSMUSG00000089593 ENSMUST00000158968 Gm26159 snRNA Interval_24320 chr11 32340840 32341667 + 0 NA Intergenic Intergenic -6567 ENSMUSG00000040711.8 ENSMUSG00000040711 ENSMUST00000138771 Sh3pxd2b protein_coding Interval_105658 chr3 88424588 88425375 + 0 NA exon (ENSMUSG00000050144.13, exon 1 of 4) protein_coding-exon (ENSMUSG00000050144.13, exon 1 of 4) 131 ENSMUSG00000050144.13 ENSMUSG00000050144 ENSMUST00000057935 Slc25a44 protein_coding Interval_39543 chr12 89811579 89812826 + 0 NA promoter-TSS (ENSMUSG00000066392.12) protein_coding-promoter-TSS (ENSMUSG00000066392.12) -206 ENSMUSG00000066392.12 ENSMUSG00000066392 ENSMUST00000110130 Nrxn3 protein_coding Interval_74107 chr17 46591726 46592130 + 0 NA intron (ENSMUSG00000023972.10, intron 1 of 19) protein_coding-intron (ENSMUSG00000023972.10, intron 1 of 19) -18978 ENSMUSG00000023972.10 ENSMUSG00000023972 ENSMUST00000044442 Ptk7 protein_coding Interval_113979 chr4 62240181 62241379 + 0 NA Intergenic Intergenic -21782 ENSMUSG00000066152.11 ENSMUSG00000066152 ENSMUST00000107467 Slc31a2 protein_coding Interval_98301 chr2 150884555 150885390 + 0 NA intron (ENSMUSG00000032046.15, intron 1 of 12) protein_coding-intron (ENSMUSG00000032046.15, intron 1 of 12) 1249 ENSMUSG00000087887.1 ENSMUSG00000087887 ENSMUST00000157262 Gm23598 snoRNA Interval_105245 chr3 84174916 84175756 + 0 NA TTS (ENSMUSG00000104043.1) protein_coding-TTS (ENSMUSG00000104043.1) 1232 ENSMUSG00000104043.1 ENSMUSG00000104043 ENSMUST00000193882 Gm6525 protein_coding Interval_157037 chr8 64711006 64711384 + 0 NA promoter-TSS (ENSMUSG00000110368.1) lincRNA-promoter-TSS (ENSMUSG00000110368.1) -119 ENSMUSG00000110368.1 ENSMUSG00000110368 ENSMUST00000210776 Gm45518 lincRNA Interval_94644 chr2 92966199 92967946 + 0 NA Intergenic Intergenic 51974 ENSMUSG00000027220.2 ENSMUSG00000027220 ENSMUST00000028648 Syt13 protein_coding Interval_73993 chr17 45907421 45907641 + 0 NA Intergenic Intergenic 22185 ENSMUSG00000117048.1 ENSMUSG00000117048 ENSMUST00000233085 Gm41584 lincRNA Interval_29863 chr11 87398173 87399188 + 0 NA intron (ENSMUSG00000007646.13, intron 2 of 7) protein_coding-intron (ENSMUSG00000007646.13, intron 3 of 8) 5826 ENSMUSG00000007646.13 ENSMUSG00000007646 ENSMUST00000129400 Rad51c protein_coding Interval_155103 chr8 26514867 26515961 + 0 NA Intergenic Intergenic -46574 ENSMUSG00000109961.1 ENSMUSG00000109961 ENSMUST00000209999 Gm31983 lincRNA Interval_59413 chr15 52665879 52666918 + 0 NA Intergenic Intergenic -46010 ENSMUSG00000038622.8 ENSMUSG00000038622 ENSMUST00000037115 Med30 protein_coding Interval_19630 chr10 106368632 106369011 + 0 NA Intergenic Intergenic 10497 ENSMUSG00000112520.1 ENSMUSG00000112520 ENSMUST00000220063 Gm48379 processed_pseudogene Interval_117356 chr4 123211759 123212532 + 0 NA intron (ENSMUSG00000054958.6, intron 3 of 5) protein_coding-intron (ENSMUSG00000054958.6, intron 3 of 5) 10641 ENSMUSG00000054958.6 ENSMUSG00000054958 ENSMUST00000068262 Nt5c1a protein_coding Interval_5978 chr1 93685284 93686939 + 0 NA promoter-TSS (ENSMUSG00000026278.14) protein_coding-promoter-TSS (ENSMUSG00000026278.14) 409 ENSMUSG00000026278.14 ENSMUSG00000026278 ENSMUST00000185685 Bok protein_coding Interval_105746 chr3 89117549 89117776 + 0 NA TTS (ENSMUSG00000105654.1) processed_pseudogene-TTS (ENSMUSG00000105654.1) 938 ENSMUSG00000105654.1 ENSMUSG00000105654 ENSMUST00000196011 Gm29704 processed_pseudogene Interval_21121 chr10 126680456 126681552 + 0 NA Intergenic Intergenic 17006 ENSMUSG00000112208.1 ENSMUSG00000112208 ENSMUST00000219762 Gm40797 lincRNA Interval_162355 chr8 127368053 127368751 + 0 NA intron (ENSMUSG00000025812.18, intron 7 of 15) protein_coding-intron (ENSMUSG00000025812.18, intron 7 of 23) -193033 ENSMUSG00000090074.1 ENSMUSG00000090074 ENSMUST00000161478 Gm6921 processed_pseudogene Interval_137161 chr6 68694410 68694625 + 0 NA Intergenic Intergenic 10461 ENSMUSG00000096490.1 ENSMUSG00000096490 ENSMUST00000103330 Igkv10-94 IG_V_gene Interval_64888 chr16 17002868 17003365 + 0 NA intron (ENSMUSG00000063358.17, intron 1 of 8) protein_coding-intron (ENSMUSG00000063358.17, intron 1 of 8) 3085 ENSMUSG00000087951.1 ENSMUSG00000087951 ENSMUST00000157326 Gm22558 snRNA Interval_144349 chr7 24619217 24620261 + 0 NA intron (ENSMUSG00000074277.4, intron 8 of 15) protein_coding-intron (ENSMUSG00000074277.4, intron 7 of 14) 8976 ENSMUSG00000074277.4 ENSMUSG00000074277 ENSMUST00000205330 Phldb3 protein_coding Interval_79058 chr18 24205151 24206608 + 0 NA promoter-TSS (ENSMUSG00000000420.15) protein_coding-promoter-TSS (ENSMUSG00000000420.15) -26718 ENSMUSG00000000420.15 ENSMUSG00000000420 ENSMUST00000170191 Galnt1 protein_coding Interval_10910 chr1 176880014 176880292 + 0 NA TTS (ENSMUSG00000093132.1) miRNA-TTS (ENSMUSG00000093132.1) 319 ENSMUSG00000093132.1 ENSMUSG00000093132 ENSMUST00000175391 Gm25993 miRNA Interval_16291 chr10 62010029 62010827 + 0 NA Intergenic Intergenic -12976 ENSMUSG00000112018.1 ENSMUSG00000112018 ENSMUST00000220135 Gm47919 TEC Interval_852 chr1 12670789 12671281 + 0 NA exon (ENSMUSG00000101314.1, exon 1 of 1) lincRNA-exon (ENSMUSG00000101314.1, exon 1 of 1) 141 ENSMUSG00000101314.1 ENSMUSG00000101314 ENSMUST00000186962 Gm29663 lincRNA Interval_77215 chr17 87407921 87408453 + 0 NA intron (ENSMUSG00000036557.8, intron 3 of 4) protein_coding-intron (ENSMUSG00000036557.8, intron 5 of 6) 19448 ENSMUSG00000036557.8 ENSMUSG00000036557 ENSMUST00000189487 Stpg4 protein_coding Interval_28097 chr11 72784216 72785106 + 0 NA intron (ENSMUSG00000057778.14, intron 2 of 3) protein_coding-intron (ENSMUSG00000057778.14, intron 2 of 3) 11180 ENSMUSG00000057778.14 ENSMUSG00000057778 ENSMUST00000169476 Cyb5d2 protein_coding Interval_38368 chr12 77912770 77913327 + 0 NA Intergenic Intergenic 93466 ENSMUSG00000112551.1 ENSMUSG00000112551 ENSMUST00000218309 Gm8219 processed_pseudogene Interval_20994 chr10 123105774 123106013 + 0 NA exon (ENSMUSG00000020124.10, exon 22 of 22) protein_coding-exon (ENSMUSG00000020124.10, exon 22 of 22) 72791 ENSMUSG00000112879.1 ENSMUSG00000112879 ENSMUST00000219693 Gm47726 processed_pseudogene Interval_420 chr1 5119434 5119811 + 0 NA intron (ENSMUSG00000033793.12, intron 7 of 10) protein_coding-intron (ENSMUSG00000033793.12, intron 8 of 13) 36490 ENSMUSG00000033793.12 ENSMUSG00000033793 ENSMUST00000192142 Atp6v1h protein_coding Interval_96029 chr2 119287612 119289128 + 0 NA promoter-TSS (ENSMUSG00000034216.12) protein_coding-promoter-TSS (ENSMUSG00000034216.12) -417 ENSMUSG00000034216.12 ENSMUSG00000034216 ENSMUST00000151500 Vps18 protein_coding Interval_136419 chr6 54284832 54285062 + 0 NA intron (ENSMUSG00000004633.17, intron 1 of 5) protein_coding-intron (ENSMUSG00000004633.17, intron 7 of 12) 12039 ENSMUSG00000004633.17 ENSMUSG00000004633 ENSMUST00000204746 Chn2 protein_coding Interval_171248 chr9 115625943 115626486 + 0 NA TTS (ENSMUSG00000094630.1) rRNA-TTS (ENSMUSG00000094630.1) 504 ENSMUSG00000094630.1 ENSMUSG00000094630 ENSMUST00000082810 n-R5s92 rRNA Interval_29270 chr11 82514753 82515102 + 0 NA Intergenic Intergenic 76670 ENSMUSG00000020701.12 ENSMUSG00000020701 ENSMUST00000202598 Tmem132e protein_coding Interval_62619 chr15 95678082 95678387 + 0 NA Intergenic Intergenic -36959 ENSMUSG00000116058.1 ENSMUSG00000116058 ENSMUST00000230585 Gm8843 processed_pseudogene Interval_48198 chr13 97124447 97124760 + 0 NA intron (ENSMUSG00000041817.14, intron 12 of 12) protein_coding-intron (ENSMUSG00000041817.14, intron 12 of 12) 13249 ENSMUSG00000060739.8 ENSMUSG00000060739 ENSMUST00000224980 Nsa2 protein_coding Interval_159179 chr8 91411036 91412136 + 0 NA intron (ENSMUSG00000055932.15, intron 4 of 4) protein_coding-intron (ENSMUSG00000055932.15, intron 3 of 8) -19641 ENSMUSG00000110233.1 ENSMUSG00000110233 ENSMUST00000209572 Gm45427 TEC Interval_108944 chr3 133517048 133519362 + 0 NA intron (ENSMUSG00000040943.12, intron 1 of 2) protein_coding-intron (ENSMUSG00000040943.12, intron 1 of 10) -26892 ENSMUSG00000105085.1 ENSMUSG00000105085 ENSMUST00000199268 Gm42567 antisense Interval_81793 chr18 64766151 64767488 + 0 NA Intergenic Intergenic 19609 ENSMUSG00000088304.1 ENSMUSG00000088304 ENSMUST00000157679 Gm24504 snRNA Interval_156100 chr8 44569216 44570071 + 0 NA Intergenic Intergenic -21569 ENSMUSG00000092685.1 ENSMUSG00000092685 ENSMUST00000174944 Gm26241 miRNA Interval_168056 chr9 75689993 75690466 + 0 NA Intergenic Intergenic 4430 ENSMUSG00000098232.1 ENSMUSG00000098232 ENSMUST00000182463 Gm3671 processed_pseudogene Interval_53720 chr14 61162244 61163053 + 0 NA intron (ENSMUSG00000048279.19, intron 2 of 8) protein_coding-intron (ENSMUSG00000048279.19, intron 2 of 9) -30825 ENSMUSG00000048279.19 ENSMUSG00000048279 ENSMUST00000229692 Sacs protein_coding Interval_156141 chr8 45062770 45066319 + 0 NA intron (ENSMUSG00000066158.7, intron 2 of 4) lincRNA-intron (ENSMUSG00000066158.7, intron 2 of 4) -2091 ENSMUSG00000066158.7 ENSMUSG00000066158 ENSMUST00000166107 AY512931 lincRNA Interval_35134 chr12 17507325 17507688 + 0 NA Intergenic Intergenic -37466 ENSMUSG00000011179.8 ENSMUSG00000011179 ENSMUST00000222250 Odc1 protein_coding Interval_133812 chr6 12592436 12592801 + 0 NA intron (ENSMUSG00000032625.14, intron 1 of 27) protein_coding-intron (ENSMUSG00000032625.14, intron 1 of 27) -16378 ENSMUSG00000107422.1 ENSMUSG00000107422 ENSMUST00000203511 Gm44129 lincRNA Interval_158276 chr8 80770723 80771672 + 0 NA exon (ENSMUSG00000109584.1, exon 1 of 1) processed_pseudogene-exon (ENSMUSG00000109584.1, exon 1 of 1) 506 ENSMUSG00000109584.1 ENSMUSG00000109584 ENSMUST00000210546 Gm7997 processed_pseudogene Interval_140424 chr6 117991170 117991510 + 0 NA Intergenic Intergenic -5867 ENSMUSG00000082791.3 ENSMUSG00000082791 ENSMUST00000118257 Gm4875 processed_pseudogene Interval_41206 chr12 111779603 111780142 + 0 NA intron (ENSMUSG00000021288.19, intron 7 of 15) protein_coding-intron (ENSMUSG00000021288.19, intron 7 of 15) 21023 ENSMUSG00000021288.19 ENSMUSG00000021288 ENSMUST00000147203 Klc1 protein_coding Interval_132630 chr5 146837956 146839822 + 0 NA Intergenic Intergenic 3745 ENSMUSG00000077564.1 ENSMUSG00000077564 ENSMUST00000104376 Gm23202 snoRNA Interval_96922 chr2 129550898 129551320 + 0 NA Intergenic Intergenic -14507 ENSMUSG00000043727.5 ENSMUSG00000043727 ENSMUST00000050309 F830045P16Rik protein_coding Interval_98641 chr2 153747920 153748678 + 0 NA intron (ENSMUSG00000027479.14, intron 2 of 3) protein_coding-intron (ENSMUSG00000027479.14, intron 2 of 6) 6697 ENSMUSG00000027479.14 ENSMUSG00000027479 ENSMUST00000123570 Mapre1 protein_coding Interval_54793 chr14 75130569 75131555 + 0 NA promoter-TSS (ENSMUSG00000021997.4) protein_coding-promoter-TSS (ENSMUSG00000021997.4) -181 ENSMUSG00000021997.4 ENSMUSG00000021997 ENSMUST00000022574 Lrrc63 protein_coding Interval_116211 chr4 108731536 108732169 + 0 NA exon (ENSMUSG00000082374.1, exon 1 of 1) processed_pseudogene-exon (ENSMUSG00000082374.1, exon 1 of 1) 110 ENSMUSG00000082374.1 ENSMUSG00000082374 ENSMUST00000118836 Gm12741 processed_pseudogene Interval_39723 chr12 95437041 95437822 + 0 NA Intergenic Intergenic -58480 ENSMUSG00000064972.1 ENSMUSG00000064972 ENSMUST00000083038 Gm26055 snRNA Interval_53247 chr14 55559825 55561150 + 0 NA promoter-TSS (ENSMUSG00000053588.4) bidirectional_promoter_lncRNA-promoter-TSS (ENSMUSG00000053588.4) -79 ENSMUSG00000053588.4 ENSMUSG00000053588 ENSMUST00000066106 A730061H03Rik bidirectional_promoter_lncRNA Interval_173643 chrX 101419063 101420564 + 0 NA promoter-TSS (ENSMUSG00000031310.16) protein_coding-promoter-TSS (ENSMUSG00000031310.16) -10079 ENSMUSG00000031310.16 ENSMUSG00000031310 ENSMUST00000134005 Zmym3 protein_coding Interval_29822 chr11 87065161 87065682 + 0 NA intron (ENSMUSG00000061666.6, intron 1 of 9) protein_coding-intron (ENSMUSG00000061666.6, intron 1 of 9) 8641 ENSMUSG00000061666.6 ENSMUSG00000061666 ENSMUST00000020804 Gdpd1 protein_coding Interval_22215 chr11 7210476 7210720 + 0 NA intron (ENSMUSG00000020427.11, intron 1 of 3) protein_coding-intron (ENSMUSG00000020427.11, intron 1 of 4) 3325 ENSMUSG00000020427.11 ENSMUSG00000020427 ENSMUST00000135887 Igfbp3 protein_coding Interval_82760 chr18 76856044 76856420 + 0 NA promoter-TSS (ENSMUSG00000091519.1) protein_coding-promoter-TSS (ENSMUSG00000091519.1) -173 ENSMUSG00000091519.1 ENSMUSG00000091519 ENSMUST00000166956 Skor2 protein_coding Interval_157948 chr8 77153982 77154995 + 0 NA intron (ENSMUSG00000031618.13, intron 1 of 2) protein_coding-intron (ENSMUSG00000031618.13, intron 2 of 7) -8008 ENSMUSG00000089309.1 ENSMUSG00000089309 ENSMUST00000158684 Gm24838 snoRNA Interval_26255 chr11 55446494 55447010 + 0 NA exon (ENSMUSG00000018585.9, exon 4 of 4) protein_coding-exon (ENSMUSG00000018585.9, exon 4 of 4) 14445 ENSMUSG00000018585.9 ENSMUSG00000018585 ENSMUST00000138412 Atox1 protein_coding Interval_66208 chr16 32331909 32333369 + 0 NA intron (ENSMUSG00000053774.9, intron 1 of 2) protein_coding-intron (ENSMUSG00000053774.9, intron 1 of 10) 374 ENSMUSG00000053774.9 ENSMUSG00000053774 ENSMUST00000232137 Ubxn7 protein_coding Interval_17763 chr10 79945669 79946194 + 0 NA promoter-TSS (ENSMUSG00000019564.12) protein_coding-promoter-TSS (ENSMUSG00000019564.12) -348 ENSMUSG00000019564.12 ENSMUSG00000019564 ENSMUST00000135005 Arid3a protein_coding Interval_159395 chr8 94292028 94292240 + 0 NA intron (ENSMUSG00000032939.14, intron 6 of 22) protein_coding-intron (ENSMUSG00000032939.14, intron 5 of 21) -3873 ENSMUSG00000032939.14 ENSMUSG00000032939 ENSMUST00000212984 Nup93 protein_coding Interval_69986 chr17 3932274 3933349 + 0 NA Intergenic Intergenic 150184 ENSMUSG00000116975.1 ENSMUSG00000116975 ENSMUST00000231647 4930470H14Rik lincRNA Interval_14353 chr10 31413633 31414130 + 0 NA TTS (ENSMUSG00000110960.1) processed_pseudogene-TTS (ENSMUSG00000110960.1) 284 ENSMUSG00000110960.1 ENSMUSG00000110960 ENSMUST00000214434 Supt4b processed_pseudogene Interval_41499 chr12 115326638 115326851 + 0 NA Intergenic Intergenic 8770 ENSMUSG00000095197.6 ENSMUSG00000095197 ENSMUST00000103530 Ighv1-59 IG_V_gene Interval_28875 chr11 78966870 78968130 + 0 NA intron (ENSMUSG00000001123.15, intron 2 of 3) protein_coding-intron (ENSMUSG00000001123.15, intron 6 of 10) 2830 ENSMUSG00000001123.15 ENSMUSG00000001123 ENSMUST00000140073 Lgals9 protein_coding Interval_103950 chr3 55418988 55419421 + 0 NA intron (ENSMUSG00000027797.15, intron 2 of 4) protein_coding-intron (ENSMUSG00000027797.15, intron 4 of 16) -18180 ENSMUSG00000105975.4 ENSMUSG00000105975 ENSMUST00000196877 Gm42609 antisense Interval_68882 chr16 87761877 87762164 + 0 NA promoter-TSS (ENSMUSG00000088684.1) snoRNA-promoter-TSS (ENSMUSG00000088684.1) -377 ENSMUSG00000088684.1 ENSMUSG00000088684 ENSMUST00000158059 Gm23994 snoRNA Interval_10759 chr1 174356971 174357698 + 0 NA Intergenic Intergenic -7788 ENSMUSG00000066672.2 ENSMUSG00000066672 ENSMUST00000085862 Olfr417 protein_coding Interval_56659 chr14 121227857 121228265 + 0 NA intron (ENSMUSG00000025555.14, intron 3 of 7) protein_coding-intron (ENSMUSG00000025555.14, intron 5 of 26) -20645 ENSMUSG00000085133.2 ENSMUSG00000085133 ENSMUST00000130256 B930095G15Rik sense_intronic Interval_10093 chr1 165757341 165757605 + 0 NA Intergenic Intergenic -6273 ENSMUSG00000040713.12 ENSMUSG00000040713 ENSMUST00000040298 Creg1 protein_coding Interval_44500 chr13 45469738 45470519 + 0 NA Intergenic Intergenic 16202 ENSMUSG00000089211.1 ENSMUSG00000089211 ENSMUST00000158586 Gm23387 snRNA Interval_159888 chr8 104695044 104696324 + 0 NA Intergenic Intergenic 12573 ENSMUSG00000110557.2 ENSMUSG00000110557 ENSMUST00000212774 Gm5159 transcribed_unprocessed_pseudogene Interval_38550 chr12 80070474 80071294 + 0 NA intron (ENSMUSG00000111933.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000111933.1, intron 1 of 1) 10550 ENSMUSG00000111933.1 ENSMUSG00000111933 ENSMUST00000218323 Gm36660 lincRNA Interval_65021 chr16 18526903 18527134 + 0 NA intron (ENSMUSG00000000884.17, intron 2 of 2) protein_coding-intron (ENSMUSG00000000884.17, intron 2 of 7) 28078 ENSMUSG00000000884.17 ENSMUSG00000000884 ENSMUST00000151253 Gnb1l protein_coding Interval_66206 chr16 32325697 32326161 + 0 NA TTS (ENSMUSG00000116900.1) processed_pseudogene-TTS (ENSMUSG00000116900.1) 766 ENSMUSG00000116900.1 ENSMUSG00000116900 ENSMUST00000232196 Gm8387 processed_pseudogene Interval_11668 chr1 184440866 184441788 + 0 NA Intergenic Intergenic -1653 ENSMUSG00000104419.1 ENSMUSG00000104419 ENSMUST00000191770 2900092O11Rik TEC Interval_140569 chr6 119643940 119644301 + 0 NA intron (ENSMUSG00000030172.15, intron 11 of 15) protein_coding-intron (ENSMUSG00000030172.15, intron 15 of 18) -22015 ENSMUSG00000030172.15 ENSMUSG00000030172 ENSMUST00000183741 Erc1 protein_coding Interval_46800 chr13 70654266 70655088 + 0 NA exon (ENSMUSG00000113334.1, exon 2 of 2) lincRNA-exon (ENSMUSG00000113334.1, exon 2 of 2) 1110 ENSMUSG00000113909.1 ENSMUSG00000113909 ENSMUST00000220833 Gm36377 lincRNA Interval_30392 chr11 94075743 94076637 + 0 NA intron (ENSMUSG00000020859.16, intron 6 of 26) protein_coding-intron (ENSMUSG00000020859.16, intron 6 of 26) 32620 ENSMUSG00000020859.16 ENSMUSG00000020859 ENSMUST00000153076 Spag9 protein_coding Interval_152587 chr7 134853897 134854239 + 0 NA intron (ENSMUSG00000058325.6, intron 25 of 26) protein_coding-intron (ENSMUSG00000058325.6, intron 25 of 51) -46602 ENSMUSG00000110167.1 ENSMUSG00000110167 ENSMUST00000210342 Gm45532 TEC Interval_23896 chr11 27959589 27959817 + 0 NA Intergenic Intergenic 76591 ENSMUSG00000084064.1 ENSMUSG00000084064 ENSMUST00000112483 Gm12079 processed_pseudogene Interval_20539 chr10 118711291 118711806 + 0 NA Intergenic Intergenic 4178 ENSMUSG00000112029.1 ENSMUSG00000112029 ENSMUST00000219594 Gm33337 lincRNA Interval_147290 chr7 65514035 65514348 + 0 NA intron (ENSMUSG00000030516.14, intron 1 of 1) protein_coding-intron (ENSMUSG00000030516.14, intron 1 of 4) -32970 ENSMUSG00000108533.1 ENSMUSG00000108533 ENSMUST00000207008 Gm44792 TEC Interval_124285 chr5 43582995 43583408 + 0 NA intron (ENSMUSG00000061535.11, intron 2 of 2) protein_coding-intron (ENSMUSG00000061535.11, intron 1 of 2) 7380 ENSMUSG00000104912.1 ENSMUSG00000104912 ENSMUST00000197583 Gm43023 TEC Interval_17643 chr10 78432885 78433554 + 0 NA intron (ENSMUSG00000112652.1, intron 2 of 2) antisense-intron (ENSMUSG00000112652.1, intron 2 of 2) -1580 ENSMUSG00000098932.1 ENSMUSG00000098932 ENSMUST00000184204 Mir6410 miRNA Interval_13030 chr10 9755023 9755243 + 0 NA TTS (ENSMUSG00000019790.17) protein_coding-TTS (ENSMUSG00000019790.17) -5974 ENSMUSG00000112200.1 ENSMUSG00000112200 ENSMUST00000217958 Gm19161 processed_pseudogene Interval_149947 chr7 103389561 103390041 + 0 NA Intergenic Intergenic -3624 ENSMUSG00000059874.2 ENSMUSG00000059874 ENSMUST00000218246 Olfr603 protein_coding Interval_126469 chr5 88747379 88748031 + 0 NA exon (ENSMUSG00000006262.15, exon 2 of 2) protein_coding-exon (ENSMUSG00000006262.15, exon 2 of 2) -7976 ENSMUSG00000095524.1 ENSMUSG00000095524 ENSMUST00000121563 Gm15682 processed_pseudogene Interval_36590 chr12 51004978 51005212 + 0 NA promoter-TSS (ENSMUSG00000111986.1) lincRNA-promoter-TSS (ENSMUSG00000111986.1) -63 ENSMUSG00000111986.1 ENSMUSG00000111986 ENSMUST00000218606 1700008C04Rik lincRNA Interval_96315 chr2 121552367 121553018 + 0 NA intron (ENSMUSG00000027238.17, intron 13 of 14) protein_coding-intron (ENSMUSG00000027238.17, intron 13 of 13) -1341 ENSMUSG00000027238.17 ENSMUSG00000027238 ENSMUST00000153704 Frmd5 protein_coding Interval_111244 chr4 15880865 15882091 + 0 NA intron (ENSMUSG00000028222.2, intron 1 of 3) protein_coding-intron (ENSMUSG00000028222.2, intron 1 of 10) -3979 ENSMUSG00000028222.2 ENSMUSG00000028222 ENSMUST00000141336 Calb1 protein_coding Interval_140282 chr6 116056614 116057627 + 0 NA promoter-TSS (ENSMUSG00000030126.17) protein_coding-promoter-TSS (ENSMUSG00000030126.17) 929 ENSMUSG00000030126.17 ENSMUSG00000030126 ENSMUST00000204574 Tmcc1 protein_coding Interval_93357 chr2 72380284 72380565 + 0 NA intron (ENSMUSG00000004085.14, intron 8 of 9) protein_coding-intron (ENSMUSG00000004085.14, intron 8 of 19) 20177 ENSMUSG00000084261.1 ENSMUSG00000084261 ENSMUST00000121019 Rpl36a-ps4 processed_pseudogene Interval_119384 chr4 137373189 137374071 + 0 NA Intergenic Intergenic 14752 ENSMUSG00000101493.1 ENSMUSG00000101493 ENSMUST00000189334 2810405F17Rik lincRNA Interval_41336 chr12 112913451 112914133 + 0 NA promoter-TSS (ENSMUSG00000002799.6) protein_coding-promoter-TSS (ENSMUSG00000002799.6) -3424 ENSMUSG00000002799.6 ENSMUSG00000002799 ENSMUST00000222402 Jag2 protein_coding Interval_99694 chr2 164358563 164359445 + 0 NA intron (ENSMUSG00000017002.14, intron 1 of 2) protein_coding-intron (ENSMUSG00000017002.14, intron 1 of 2) -4621 ENSMUSG00000098489.1 ENSMUSG00000098489 ENSMUST00000185076 Mir7678 miRNA Interval_118704 chr4 133284836 133285023 + 0 NA Intergenic Intergenic -3617 ENSMUSG00000083241.1 ENSMUSG00000083241 ENSMUST00000120792 Gm13259 processed_pseudogene Interval_1017 chr1 14097727 14098246 + 0 NA Intergenic Intergenic 14833 ENSMUSG00000104209.1 ENSMUSG00000104209 ENSMUST00000193148 Gm37400 TEC Interval_156547 chr8 50828544 50828863 + 0 NA intron (ENSMUSG00000110246.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000110246.1, intron 2 of 6) 88294 ENSMUSG00000110246.1 ENSMUSG00000110246 ENSMUST00000211313 C130073E24Rik lincRNA Interval_156440 chr8 48220100 48221245 + 0 NA Intergenic Intergenic 50313 ENSMUSG00000110480.1 ENSMUSG00000110480 ENSMUST00000212653 Gm32842 processed_pseudogene Interval_100407 chr2 168866385 168867214 + 0 NA Intergenic Intergenic 15369 ENSMUSG00000077761.1 ENSMUSG00000077761 ENSMUST00000104573 Gm25214 snoRNA Interval_111229 chr4 15209050 15209371 + 0 NA Intergenic Intergenic 54818 ENSMUSG00000083073.1 ENSMUSG00000083073 ENSMUST00000117886 Gm11845 processed_pseudogene Interval_161765 chr8 122624622 122625083 + 0 NA TTS (ENSMUSG00000006362.16) protein_coding-TTS (ENSMUSG00000006362.16) -2118 ENSMUSG00000069867.3 ENSMUSG00000069867 ENSMUST00000212966 Pabpn1l protein_coding Interval_109664 chr3 145858652 145859169 + 0 NA intron (ENSMUSG00000028194.15, intron 4 of 4) protein_coding-intron (ENSMUSG00000028194.15, intron 4 of 5) -20110 ENSMUSG00000105388.1 ENSMUSG00000105388 ENSMUST00000197973 Rpl36a-ps2 processed_pseudogene Interval_26085 chr11 54060405 54060623 + 0 NA intron (ENSMUSG00000020388.12, intron 2 of 4) protein_coding-intron (ENSMUSG00000020388.12, intron 2 of 6) 4054 ENSMUSG00000020388.12 ENSMUSG00000020388 ENSMUST00000151948 Pdlim4 protein_coding Interval_40329 chr12 103739986 103740332 + 0 NA exon (ENSMUSG00000071178.11, exon 1 of 5) protein_coding-exon (ENSMUSG00000071178.11, exon 1 of 5) -2001 ENSMUSG00000071178.11 ENSMUSG00000071178 ENSMUST00000187220 Serpina1b protein_coding Interval_31350 chr11 100200054 100200678 + 0 NA Intergenic Intergenic 5664 ENSMUSG00000045545.8 ENSMUSG00000045545 ENSMUST00000007272 Krt14 protein_coding Interval_103098 chr3 35309159 35309370 + 0 NA Intergenic Intergenic -16350 ENSMUSG00000093499.1 ENSMUSG00000093499 ENSMUST00000177270 Gm25442 miRNA Interval_151541 chr7 123395714 123397670 + 0 NA intron (ENSMUSG00000030763.7, intron 1 of 10) protein_coding-intron (ENSMUSG00000030763.7, intron 1 of 10) -13921 ENSMUSG00000088449.1 ENSMUSG00000088449 ENSMUST00000157824 Gm23559 snRNA Interval_123466 chr5 32722078 32722397 + 0 NA intron (ENSMUSG00000082305.4, intron 2 of 2) transcribed_unprocessed_pseudogene-intron (ENSMUSG00000082305.4, intron 3 of 17) 1907 ENSMUSG00000082305.4 ENSMUSG00000082305 ENSMUST00000202224 Gm2420 transcribed_unprocessed_pseudogene Interval_80762 chr18 46912665 46913037 + 0 NA Intergenic Intergenic -3926 ENSMUSG00000117630.1 ENSMUSG00000117630 ENSMUST00000234575 Gm49973 processed_pseudogene Interval_154056 chr8 12384096 12387678 + 0 NA exon (ENSMUSG00000047935.17, exon 1 of 9) sense_overlapping-exon (ENSMUSG00000047935.17, exon 1 of 9) 116 ENSMUSG00000047935.17 ENSMUSG00000047935 ENSMUST00000186174 Sox1ot sense_overlapping Interval_137439 chr6 72458338 72458551 + 0 NA Intergenic Intergenic -18901 ENSMUSG00000053907.10 ENSMUSG00000053907 ENSMUST00000206783 Mat2a protein_coding Interval_151885 chr7 127302174 127302393 + 0 NA intron (ENSMUSG00000030830.18, intron 7 of 31) protein_coding-intron (ENSMUSG00000030830.18, intron 7 of 30) 4853 ENSMUSG00000030830.18 ENSMUSG00000030830 ENSMUST00000118405 Itgal protein_coding Interval_7481 chr1 131737250 131737455 + 0 NA Intergenic Intergenic -6686 ENSMUSG00000042268.10 ENSMUSG00000042268 ENSMUST00000147800 Slc26a9 protein_coding Interval_92267 chr2 57613460 57613703 + 0 NA Intergenic Intergenic 15647 ENSMUSG00000081642.1 ENSMUSG00000081642 ENSMUST00000120373 Gm13532 processed_pseudogene Interval_111177 chr4 14170176 14170501 + 0 NA exon (ENSMUSG00000082128.1, exon 1 of 1) processed_pseudogene-exon (ENSMUSG00000082128.1, exon 1 of 1) 272 ENSMUSG00000082128.1 ENSMUSG00000082128 ENSMUST00000120191 Gm11824 processed_pseudogene Interval_101534 chr3 4280471 4280845 + 0 NA Intergenic Intergenic 24635 ENSMUSG00000096480.1 ENSMUSG00000096480 ENSMUST00000175001 Gm23976 miRNA Interval_2149 chr1 36727155 36727590 + 0 NA intron (ENSMUSG00000102416.4, intron 4 of 8) protein_coding-intron (ENSMUSG00000102416.4, intron 4 of 4) 12834 ENSMUSG00000102416.4 ENSMUSG00000102416 ENSMUST00000193459 4933424G06Rik protein_coding Interval_130762 chr5 130226912 130227228 + 0 NA exon (ENSMUSG00000106751.1, exon 1 of 1) TEC-exon (ENSMUSG00000106751.1, exon 1 of 1) 854 ENSMUSG00000106751.1 ENSMUSG00000106751 ENSMUST00000202954 Gm42467 TEC Interval_59218 chr15 48874257 48874610 + 0 NA Intergenic Intergenic -13920 ENSMUSG00000115700.1 ENSMUSG00000115700 ENSMUST00000228537 Gm7517 processed_pseudogene Interval_73122 chr17 34930860 34931910 + 0 NA promoter-TSS (ENSMUSG00000007038.5) protein_coding-promoter-TSS (ENSMUSG00000007038.5) -478 ENSMUSG00000007038.5 ENSMUSG00000007038 ENSMUST00000174715 Neu1 protein_coding Interval_82231 chr18 69438763 69439661 + 0 NA intron (ENSMUSG00000053477.17, intron 1 of 17) protein_coding-intron (ENSMUSG00000053477.17, intron 4 of 20) -83238 ENSMUSG00000053477.17 ENSMUSG00000053477 ENSMUST00000136019 Tcf4 protein_coding Interval_146609 chr7 47864200 47865607 + 0 NA Intergenic Intergenic 7204 ENSMUSG00000101622.1 ENSMUSG00000101622 ENSMUST00000188059 Mrgpra18-ps unprocessed_pseudogene Interval_39180 chr12 85644283 85644739 + 0 NA Intergenic Intergenic -17931 ENSMUSG00000113249.1 ENSMUSG00000113249 ENSMUST00000222443 Gm33312 processed_pseudogene Interval_6388 chr1 106738233 106738850 + 0 NA intron (ENSMUSG00000009905.5, intron 7 of 9) protein_coding-intron (ENSMUSG00000009905.5, intron 7 of 9) 21142 ENSMUSG00000009905.5 ENSMUSG00000009905 ENSMUST00000187617 Kdsr protein_coding Interval_48573 chr13 100411775 100412256 + 0 NA intron (ENSMUSG00000021640.6, intron 14 of 15) protein_coding-intron (ENSMUSG00000021640.6, intron 13 of 14) -3550 ENSMUSG00000051723.7 ENSMUSG00000051723 ENSMUST00000060994 Rpl31-ps13 processed_pseudogene Interval_100609 chr2 170441013 170441507 + 0 NA Intergenic Intergenic 22559 ENSMUSG00000084067.3 ENSMUSG00000084067 ENSMUST00000120455 Gm14269 processed_pseudogene Interval_83109 chr18 81415117 81415346 + 0 NA Intergenic Intergenic 42668 ENSMUSG00000118227.1 ENSMUSG00000118227 ENSMUST00000236435 Gm30288 lincRNA Interval_106881 chr3 101487171 101488535 + 0 NA Intergenic Intergenic -62200 ENSMUSG00000106137.1 ENSMUSG00000106137 ENSMUST00000196233 Gm42538 antisense Interval_23379 chr11 22050547 22051014 + 0 NA intron (ENSMUSG00000042302.14, intron 21 of 24) protein_coding-intron (ENSMUSG00000042302.14, intron 20 of 23) -49070 ENSMUSG00000005917.15 ENSMUSG00000005917 ENSMUST00000147486 Otx1 protein_coding Interval_146709 chr7 49605351 49606929 + 0 NA intron (ENSMUSG00000052512.17, intron 38 of 38) protein_coding-intron (ENSMUSG00000052512.17, intron 37 of 37) 30709 ENSMUSG00000030507.6 ENSMUSG00000030507 ENSMUST00000032717 Dbx1 protein_coding Interval_141654 chr6 132290024 132290214 + 0 NA Intergenic Intergenic 24638 ENSMUSG00000107874.1 ENSMUSG00000107874 ENSMUST00000048686 Prpmp5 protein_coding Interval_28093 chr11 72767512 72767819 + 0 NA TTS (ENSMUSG00000020790.14) protein_coding-TTS (ENSMUSG00000020790.14) 28176 ENSMUSG00000057778.14 ENSMUSG00000057778 ENSMUST00000169476 Cyb5d2 protein_coding Interval_87074 chr19 45977927 45978580 + 0 NA intron (ENSMUSG00000039901.10, intron 2 of 20) protein_coding-intron (ENSMUSG00000039901.10, intron 2 of 25) -19952 ENSMUSG00000097690.2 ENSMUSG00000097690 ENSMUST00000236194 4930505N22Rik bidirectional_promoter_lncRNA Interval_128408 chr5 113164414 113165723 + 0 NA TTS (ENSMUSG00000106206.1) TEC-TTS (ENSMUSG00000106206.1) 1166 ENSMUSG00000106206.1 ENSMUSG00000106206 ENSMUST00000196549 Gm43094 TEC Interval_137317 chr6 71270837 71272852 + 0 NA promoter-TSS (ENSMUSG00000053012.17) protein_coding-promoter-TSS (ENSMUSG00000053012.17) 143 ENSMUSG00000053012.17 ENSMUSG00000053012 ENSMUST00000080949 Krcc1 protein_coding Interval_111561 chr4 23433467 23433814 + 0 NA Intergenic Intergenic -51180 ENSMUSG00000083785.1 ENSMUSG00000083785 ENSMUST00000120471 Gm11888 processed_pseudogene Interval_5549 chr1 89745027 89746035 + 0 NA intron (ENSMUSG00000055013.16, intron 11 of 16) protein_coding-intron (ENSMUSG00000055013.16, intron 11 of 17) -43632 ENSMUSG00000055013.16 ENSMUSG00000055013 ENSMUST00000212924 Agap1 protein_coding Interval_109685 chr3 145993581 145993963 + 0 NA exon (ENSMUSG00000036863.12, exon 1 of 2) protein_coding-exon (ENSMUSG00000036863.12, exon 1 of 2) 5635 ENSMUSG00000036863.12 ENSMUSG00000036863 ENSMUST00000195918 Syde2 protein_coding Interval_26869 chr11 61201690 61201901 + 0 NA Intergenic Intergenic 4380 ENSMUSG00000082626.1 ENSMUSG00000082626 ENSMUST00000117939 Rps13-ps5 processed_pseudogene Interval_73208 chr17 35582707 35583145 + 0 NA Intergenic Intergenic 15441 ENSMUSG00000039269.5 ENSMUSG00000039269 ENSMUST00000174246 2300002M23Rik protein_coding Interval_58591 chr15 36441422 36441779 + 0 NA Intergenic Intergenic -4909 ENSMUSG00000115395.1 ENSMUSG00000115395 ENSMUST00000227487 Gm49224 lincRNA Interval_149656 chr7 100442229 100443648 + 0 NA promoter-TSS (ENSMUSG00000047248.20) protein_coding-promoter-TSS (ENSMUSG00000047248.20) -15522 ENSMUSG00000102241.1 ENSMUSG00000102241 ENSMUST00000193553 Gm37716 TEC Interval_145083 chr7 29935257 29936534 + 0 NA exon (ENSMUSG00000059975.15, exon 4 of 4) protein_coding-exon (ENSMUSG00000059975.15, exon 4 of 4) 8917 ENSMUSG00000109105.1 ENSMUSG00000109105 ENSMUST00000208490 Gm44873 TEC Interval_173194 chrX 74001534 74001831 + 0 NA Intergenic Intergenic -5020 ENSMUSG00000080829.1 ENSMUSG00000080829 ENSMUST00000120692 Gm8545 processed_pseudogene Interval_71784 chr17 26067754 26069959 + 0 NA exon (ENSMUSG00000037098.18, exon 1 of 14) protein_coding-exon (ENSMUSG00000037098.18, exon 1 of 14) -4290 ENSMUSG00000118105.1 ENSMUSG00000118105 ENSMUST00000237108 Gm17814 processed_pseudogene Interval_44356 chr13 44100525 44101559 + 0 NA Intergenic Intergenic -1082 ENSMUSG00000113276.1 ENSMUSG00000113276 ENSMUST00000223038 Gm33630 lincRNA Interval_163052 chr9 14836258 14837426 + 0 NA exon (ENSMUSG00000031928.15, exon 19 of 19) protein_coding-exon (ENSMUSG00000031928.15, exon 19 of 19) -8771 ENSMUSG00000090023.1 ENSMUSG00000090023 ENSMUST00000159268 Gm16302 lincRNA Interval_25699 chr11 50864118 50865507 + 0 NA exon (ENSMUSG00000000617.14, exon 10 of 10) protein_coding-exon (ENSMUSG00000000617.14, exon 10 of 10) -12230 ENSMUSG00000086226.1 ENSMUSG00000086226 ENSMUST00000123764 Gm12660 antisense Interval_38668 chr12 80938778 80939189 + 0 NA Intergenic Intergenic 6413 ENSMUSG00000112880.1 ENSMUSG00000112880 ENSMUST00000219062 Gm20337 bidirectional_promoter_lncRNA Interval_43629 chr13 34227573 34228277 + 0 NA intron (ENSMUSG00000038267.15, intron 3 of 9) protein_coding-intron (ENSMUSG00000038267.15, intron 3 of 10) 49327 ENSMUSG00000088573.1 ENSMUSG00000088573 ENSMUST00000157948 Gm24530 misc_RNA Interval_130128 chr5 124444890 124446900 + 0 NA promoter-TSS (ENSMUSG00000049327.17) protein_coding-promoter-TSS (ENSMUSG00000049327.17) 5928 ENSMUSG00000049327.17 ENSMUSG00000049327 ENSMUST00000125588 Kmt5a protein_coding Interval_8305 chr1 137071969 137072135 + 0 NA Intergenic Intergenic -81782 ENSMUSG00000088970.1 ENSMUSG00000088970 ENSMUST00000158345 Gm23763 snRNA Interval_141467 chr6 128440448 128440678 + 0 NA intron (ENSMUSG00000059659.7, intron 2 of 4) antisense-intron (ENSMUSG00000059659.7, intron 2 of 2) 1224 ENSMUSG00000059659.7 ENSMUSG00000059659 ENSMUST00000204037 Gm10069 antisense Interval_165217 chr9 45411894 45412603 + 0 NA Intergenic Intergenic 1842 ENSMUSG00000111186.1 ENSMUSG00000111186 ENSMUST00000216490 Gm48135 TEC Interval_35392 chr12 21284988 21286896 + 0 NA promoter-TSS (ENSMUSG00000054309.9) protein_coding-promoter-TSS (ENSMUSG00000054309.9) 277 ENSMUSG00000062352.15 ENSMUSG00000062352 ENSMUST00000173614 Itgb1bp1 protein_coding Interval_119239 chr4 136401100 136402983 + 0 NA Intergenic Intergenic -22571 ENSMUSG00000070687.11 ENSMUSG00000070687 ENSMUST00000133818 Htr1d protein_coding Interval_39149 chr12 85451355 85452596 + 0 NA Intergenic Intergenic -15726 ENSMUSG00000113940.1 ENSMUSG00000113940 ENSMUST00000220805 Gm40477 lincRNA Interval_130857 chr5 132650086 132650514 + 0 NA Intergenic Intergenic 104244 ENSMUSG00000105809.1 ENSMUSG00000105809 ENSMUST00000196866 Gm42626 lincRNA Interval_127011 chr5 99552451 99554417 + 0 NA intron (ENSMUSG00000089809.9, intron 3 of 16) protein_coding-intron (ENSMUSG00000089809.9, intron 2 of 3) -42752 ENSMUSG00000090006.1 ENSMUSG00000090006 ENSMUST00000160088 Gm16227 sense_intronic Interval_40748 chr12 108126732 108127011 + 0 NA intron (ENSMUSG00000056770.15, intron 1 of 2) protein_coding-intron (ENSMUSG00000056770.15, intron 6 of 12) 36138 ENSMUSG00000056770.15 ENSMUSG00000056770 ENSMUST00000125916 Setd3 protein_coding Interval_52952 chr14 52244153 52245078 + 0 NA promoter-TSS (ENSMUSG00000053754.14) protein_coding-promoter-TSS (ENSMUSG00000053754.14) -14196 ENSMUSG00000105868.1 ENSMUSG00000105868 ENSMUST00000200590 Gm43766 TEC Interval_153133 chr7 141561526 141563286 + 0 NA promoter-TSS (ENSMUSG00000002957.11) protein_coding-promoter-TSS (ENSMUSG00000002957.11) 198 ENSMUSG00000002957.11 ENSMUSG00000002957 ENSMUST00000201261 Ap2a2 protein_coding Interval_2322 chr1 38051056 38051345 + 0 NA exon (ENSMUSG00000026083.12, exon 23 of 24) protein_coding-exon (ENSMUSG00000026083.12, exon 23 of 24) 6566 ENSMUSG00000026083.12 ENSMUSG00000026083 ENSMUST00000195664 Eif5b protein_coding Interval_132170 chr5 143066483 143067055 + 0 NA promoter-TSS (ENSMUSG00000105714.1) processed_pseudogene-promoter-TSS (ENSMUSG00000105714.1) -884 ENSMUSG00000105714.1 ENSMUSG00000105714 ENSMUST00000200421 Gm43380 processed_pseudogene Interval_69474 chr16 93780452 93781380 + 0 NA TTS (ENSMUSG00000022946.10) protein_coding-TTS (ENSMUSG00000022946.10) -11873 ENSMUSG00000022946.10 ENSMUSG00000022946 ENSMUST00000228423 Dop1b protein_coding Interval_80482 chr18 42590937 42591310 + 0 NA intron (ENSMUSG00000117719.1, intron 2 of 2) lincRNA-intron (ENSMUSG00000117719.1, intron 2 of 2) 3782 ENSMUSG00000117719.1 ENSMUSG00000117719 ENSMUST00000235923 Gm50214 lincRNA Interval_65391 chr16 22091632 22091831 + 0 NA intron (ENSMUSG00000033581.17, intron 2 of 14) protein_coding-intron (ENSMUSG00000033581.17, intron 2 of 15) 29505 ENSMUSG00000033581.17 ENSMUSG00000033581 ENSMUST00000127696 Igf2bp2 protein_coding Interval_116470 chr4 113963748 113964235 + 0 NA intron (ENSMUSG00000078598.11, intron 2 of 16) protein_coding-intron (ENSMUSG00000078598.11, intron 2 of 3) 35512 ENSMUSG00000078598.11 ENSMUSG00000078598 ENSMUST00000153413 Skint5 protein_coding Interval_86682 chr19 42584599 42585048 + 0 NA TTS (ENSMUSG00000025184.10) protein_coding-TTS (ENSMUSG00000025184.10) 3662 ENSMUSG00000025184.10 ENSMUSG00000025184 ENSMUST00000162238 R3hcc1l protein_coding Interval_47642 chr13 90625051 90625870 + 0 NA Intergenic Intergenic -8625 ENSMUSG00000103069.1 ENSMUSG00000103069 ENSMUST00000192217 Gm36966 TEC Interval_60469 chr15 74057847 74058427 + 0 NA Intergenic Intergenic 23374 ENSMUSG00000075609.3 ENSMUSG00000075609 ENSMUST00000100555 Gm7935 processed_pseudogene Interval_74439 chr17 50530178 50530392 + 0 NA intron (ENSMUSG00000038910.7, intron 1 of 5) protein_coding-intron (ENSMUSG00000038910.7, intron 1 of 5) -76709 ENSMUSG00000038910.7 ENSMUSG00000038910 ENSMUST00000233823 Plcl2 protein_coding Interval_146830 chr7 52731607 52733031 + 0 NA Intergenic Intergenic -23146 ENSMUSG00000074092.5 ENSMUSG00000074092 ENSMUST00000117187 Gm6181 processed_pseudogene Interval_145866 chr7 40813410 40814273 + 0 NA Intergenic Intergenic 7269 ENSMUSG00000108672.1 ENSMUSG00000108672 ENSMUST00000206420 Gm45008 TEC Interval_87536 chr19 53313331 53314631 + 0 NA intron (ENSMUSG00000025025.14, intron 1 of 4) protein_coding-intron (ENSMUSG00000025025.14, intron 1 of 5) 11762 ENSMUSG00000118369.1 ENSMUSG00000118369 ENSMUST00000237210 Gm30541 processed_transcript Interval_162777 chr9 9003995 9004240 + 0 NA intron (ENSMUSG00000050730.17, intron 20 of 22) protein_coding-intron (ENSMUSG00000050730.17, intron 20 of 22) 32326 ENSMUSG00000078117.2 ENSMUSG00000078117 ENSMUST00000104915 Gm16485 TEC Interval_170185 chr9 106040188 106040618 + 0 NA intron (ENSMUSG00000032572.9, intron 19 of 37) protein_coding-intron (ENSMUSG00000032572.9, intron 19 of 37) 26873 ENSMUSG00000111796.1 ENSMUSG00000111796 ENSMUST00000213434 Gm47575 antisense Interval_102242 chr3 19837684 19838419 + 0 NA Intergenic Intergenic -56835 ENSMUSG00000048106.6 ENSMUSG00000048106 ENSMUST00000059704 4632415L05Rik transcribed_unprocessed_pseudogene Interval_35340 chr12 20815033 20816425 + 0 NA promoter-TSS (ENSMUSG00000091071.2) transcribed_unprocessed_pseudogene-promoter-TSS (ENSMUSG00000091071.2) 50 ENSMUSG00000099759.1 ENSMUSG00000099759 ENSMUST00000189625 1700030C10Rik processed_transcript Interval_25924 chr11 52621757 52622155 + 0 NA Intergenic Intergenic -134646 ENSMUSG00000083129.1 ENSMUSG00000083129 ENSMUST00000118245 Gm12210 processed_pseudogene Interval_56559 chr14 120346949 120347621 + 0 NA intron (ENSMUSG00000022139.17, intron 2 of 2) protein_coding-intron (ENSMUSG00000022139.17, intron 2 of 8) -31956 ENSMUSG00000022139.17 ENSMUSG00000022139 ENSMUST00000227153 Mbnl2 protein_coding Interval_130991 chr5 134438789 134440413 + 0 NA intron (ENSMUSG00000023079.14, intron 1 of 3) protein_coding-intron (ENSMUSG00000023079.14, intron 1 of 30) -8973 ENSMUSG00000076320.1 ENSMUSG00000076320 ENSMUST00000102365 Gm26340 miRNA Interval_14914 chr10 41029082 41029645 + 0 NA Intergenic Intergenic -5832 ENSMUSG00000111098.1 ENSMUSG00000111098 ENSMUST00000214667 Gm48057 lincRNA Interval_118338 chr4 130753601 130754407 + 0 NA exon (ENSMUSG00000028580.15, exon 14 of 22) protein_coding-exon (ENSMUSG00000028580.15, exon 14 of 22) 4370 ENSMUSG00000065196.1 ENSMUSG00000065196 ENSMUST00000083262 Snord85 snoRNA Interval_64061 chr16 6885384 6886367 + 0 NA intron (ENSMUSG00000008658.16, intron 4 of 11) protein_coding-intron (ENSMUSG00000008658.16, intron 3 of 14) -307872 ENSMUSG00000008658.16 ENSMUSG00000008658 ENSMUST00000231031 Rbfox1 protein_coding Interval_127036 chr5 99830097 99831262 + 0 NA Intergenic Intergenic 9311 ENSMUSG00000104731.1 ENSMUSG00000104731 ENSMUST00000200464 Gm43249 processed_pseudogene Interval_64718 chr16 14443668 14444012 + 0 NA intron (ENSMUSG00000023088.17, intron 16 of 30) protein_coding-intron (ENSMUSG00000023088.17, intron 16 of 30) 39906 ENSMUSG00000116439.1 ENSMUSG00000116439 ENSMUST00000231182 Gm49528 unprocessed_pseudogene Interval_146034 chr7 43343786 43344664 + 0 NA promoter-TSS (ENSMUSG00000108300.1) processed_pseudogene-promoter-TSS (ENSMUSG00000108300.1) -325 ENSMUSG00000108300.1 ENSMUSG00000108300 ENSMUST00000206010 Gm44539 processed_pseudogene Interval_130562 chr5 128841932 128843267 + 0 NA intron (ENSMUSG00000029420.14, intron 1 of 20) protein_coding-intron (ENSMUSG00000029420.14, intron 2 of 21) -67049 ENSMUSG00000106522.1 ENSMUSG00000106522 ENSMUST00000199333 Gm42871 sense_intronic Interval_385 chr1 4802333 4803568 + 0 NA Intergenic Intergenic -4880 ENSMUSG00000025903.14 ENSMUSG00000025903 ENSMUST00000141278 Lypla1 protein_coding Interval_162085 chr8 124985123 124985309 + 0 NA Intergenic Intergenic -27833 ENSMUSG00000056820.7 ENSMUSG00000056820 ENSMUST00000212603 Tsnax protein_coding Interval_70072 chr17 5138589 5139837 + 0 NA intron (ENSMUSG00000069729.14, intron 4 of 19) protein_coding-intron (ENSMUSG00000069729.14, intron 4 of 18) -27103 ENSMUSG00000081783.2 ENSMUSG00000081783 ENSMUST00000122283 Gm15599 processed_pseudogene Interval_147349 chr7 66027479 66028009 + 0 NA intron (ENSMUSG00000030513.14, intron 13 of 19) protein_coding-intron (ENSMUSG00000030513.14, intron 15 of 21) -15858 ENSMUSG00000108793.1 ENSMUSG00000108793 ENSMUST00000206065 Gm45213 protein_coding Interval_8736 chr1 150232415 150233532 + 0 NA Intergenic Intergenic 33026 ENSMUSG00000099875.1 ENSMUSG00000099875 ENSMUST00000121422 Rbm3-ps processed_pseudogene Interval_87930 chr19 57173399 57174195 + 0 NA intron (ENSMUSG00000025085.16, intron 1 of 20) protein_coding-intron (ENSMUSG00000025085.16, intron 1 of 25) -100163 ENSMUSG00000117684.1 ENSMUSG00000117684 ENSMUST00000237596 4930449E18Rik antisense Interval_75420 chr17 66458348 66458845 + 0 NA Intergenic Intergenic 8742 ENSMUSG00000117003.1 ENSMUSG00000117003 ENSMUST00000233518 Gm49937 bidirectional_promoter_lncRNA Interval_56061 chr14 105232555 105232872 + 0 NA Intergenic Intergenic -17297 ENSMUSG00000094275.1 ENSMUSG00000094275 ENSMUST00000177655 Gm22290 snRNA Interval_40570 chr12 105796779 105797483 + 0 NA intron (ENSMUSG00000021111.15, intron 1 of 6) protein_coding-intron (ENSMUSG00000021111.15, intron 1 of 22) -31936 ENSMUSG00000021111.15 ENSMUSG00000021111 ENSMUST00000172089 Papola protein_coding Interval_160104 chr8 106454135 106454529 + 0 NA Intergenic Intergenic 39005 ENSMUSG00000031907.9 ENSMUSG00000031907 ENSMUST00000212874 Zfp90 protein_coding Interval_118700 chr4 133256791 133258111 + 0 NA exon (ENSMUSG00000028860.13, exon 7 of 15) protein_coding-exon (ENSMUSG00000028860.13, exon 7 of 15) 5601 ENSMUSG00000028860.13 ENSMUSG00000028860 ENSMUST00000154911 Sytl1 protein_coding Interval_111741 chr4 27104948 27106727 + 0 NA Intergenic Intergenic 20672 ENSMUSG00000083447.1 ENSMUSG00000083447 ENSMUST00000120562 Gm11904 processed_pseudogene Interval_173556 chrX 99325975 99326956 + 0 NA Intergenic Intergenic 92430 ENSMUSG00000085053.1 ENSMUSG00000085053 ENSMUST00000152025 Gm14809 lincRNA Interval_62238 chr15 89095144 89095964 + 0 NA intron (ENSMUSG00000035757.16, intron 3 of 4) protein_coding-intron (ENSMUSG00000035757.16, intron 3 of 8) 6470 ENSMUSG00000035757.16 ENSMUSG00000035757 ENSMUST00000082439 Selenoo protein_coding Interval_84372 chr19 10437445 10437966 + 0 NA intron (ENSMUSG00000024743.16, intron 8 of 12) protein_coding-intron (ENSMUSG00000024743.16, intron 4 of 8) -2192 ENSMUSG00000118310.1 ENSMUSG00000118310 ENSMUST00000238123 Gm50268 TEC Interval_162863 chr9 10569651 10570074 + 0 NA intron (ENSMUSG00000039488.15, intron 2 of 20) protein_coding-intron (ENSMUSG00000039488.15, intron 2 of 24) 93927 ENSMUSG00000111648.1 ENSMUSG00000111648 ENSMUST00000217614 Gm46103 processed_pseudogene Interval_123519 chr5 33134230 33134595 + 0 NA intron (ENSMUSG00000011034.6, intron 4 of 14) protein_coding-intron (ENSMUSG00000011034.6, intron 4 of 14) 7610 ENSMUSG00000081022.1 ENSMUSG00000081022 ENSMUST00000118706 Gm15936 processed_pseudogene Interval_35339 chr12 20813589 20814123 + 0 NA TTS (ENSMUSG00000091071.2) transcribed_unprocessed_pseudogene-TTS (ENSMUSG00000091071.2) 1615 ENSMUSG00000091071.2 ENSMUSG00000091071 ENSMUST00000186243 1700030C10Rik transcribed_unprocessed_pseudogene Interval_129278 chr5 118619845 118620940 + 0 NA intron (ENSMUSG00000018076.12, intron 2 of 4) protein_coding-intron (ENSMUSG00000018076.12, intron 2 of 30) 2098 ENSMUSG00000106798.1 ENSMUSG00000106798 ENSMUST00000202053 Gm43275 TEC Interval_45782 chr13 58047990 58048324 + 0 NA intron (ENSMUSG00000014164.15, intron 6 of 14) protein_coding-intron (ENSMUSG00000014164.15, intron 8 of 16) -24957 ENSMUSG00000077962.1 ENSMUSG00000077962 ENSMUST00000104769 Mir874 miRNA Interval_151038 chr7 118096891 118098366 + 0 NA Intergenic Intergenic 17628 ENSMUSG00000008683.16 ENSMUSG00000008683 ENSMUST00000128482 Rps15a protein_coding Interval_145946 chr7 42560109 42561803 + 0 NA TTS (ENSMUSG00000108446.1) processed_transcript-TTS (ENSMUSG00000108446.1) 17279 ENSMUSG00000108446.1 ENSMUSG00000108446 ENSMUST00000205775 Gm44997 processed_transcript Interval_76663 chr17 83284936 83285671 + 0 NA Intergenic Intergenic -3243 ENSMUSG00000094256.2 ENSMUSG00000094256 ENSMUST00000077420 Rpl21-ps7 processed_pseudogene Interval_88072 chr19 58827668 58828383 + 0 NA intron (ENSMUSG00000025092.7, intron 1 of 1) protein_coding-intron (ENSMUSG00000025092.7, intron 2 of 11) -5904 ENSMUSG00000025092.7 ENSMUSG00000025092 ENSMUST00000237786 Hspa12a protein_coding Interval_84895 chr19 18663933 18664833 + 0 NA Intergenic Intergenic -6946 ENSMUSG00000024726.10 ENSMUSG00000024726 ENSMUST00000236401 Carnmt1 protein_coding Interval_341 chr1 4346766 4347135 + 0 NA exon (ENSMUSG00000025900.13, exon 4 of 4) protein_coding-exon (ENSMUSG00000025900.13, exon 4 of 4) 17879 ENSMUSG00000104123.1 ENSMUSG00000104123 ENSMUST00000194382 Gm37483 TEC Interval_154385 chr8 15189252 15189569 + 0 NA exon (ENSMUSG00000109886.1, exon 1 of 2) lincRNA-exon (ENSMUSG00000109886.1, exon 1 of 2) 202 ENSMUSG00000109886.1 ENSMUSG00000109886 ENSMUST00000211017 Gm45271 lincRNA Interval_62260 chr15 89261128 89261460 + 0 NA TTS (ENSMUSG00000036561.9) protein_coding-TTS (ENSMUSG00000036561.9) 32516 ENSMUSG00000036529.17 ENSMUSG00000036529 ENSMUST00000146637 Sbf1 protein_coding Interval_51518 chr14 29443304 29443677 + 0 NA intron (ENSMUSG00000021991.9, intron 4 of 37) protein_coding-intron (ENSMUSG00000021991.9, intron 4 of 37) -109755 ENSMUSG00000021991.9 ENSMUSG00000021991 ENSMUST00000224128 Cacna2d3 protein_coding Interval_171491 chr9 118768689 118769718 + 0 NA exon (ENSMUSG00000039115.13, exon 16 of 28) protein_coding-exon (ENSMUSG00000039115.13, exon 16 of 28) 68752 ENSMUSG00000066270.3 ENSMUSG00000066270 ENSMUST00000139408 Gm10157 processed_pseudogene Interval_95450 chr2 109666147 109666871 + 0 NA Intergenic Intergenic -6657 ENSMUSG00000093410.1 ENSMUSG00000093410 ENSMUST00000175796 Gm20638 processed_transcript Interval_135914 chr6 48642920 48643149 + 0 NA Intergenic Intergenic -4350 ENSMUSG00000064262.7 ENSMUSG00000064262 ENSMUST00000203509 Gimap8 protein_coding Interval_114775 chr4 85185956 85186969 + 0 NA Intergenic Intergenic 9935 ENSMUSG00000084267.1 ENSMUSG00000084267 ENSMUST00000119153 Gm12417 processed_pseudogene Interval_88400 chr2 4802624 4803008 + 0 NA TTS (ENSMUSG00000048186.14) protein_coding-TTS (ENSMUSG00000048186.14) 31796 ENSMUSG00000083407.1 ENSMUSG00000083407 ENSMUST00000117910 Gm13176 processed_pseudogene Interval_37862 chr12 72663794 72665392 + 0 NA exon (ENSMUSG00000021094.10, exon 1 of 1) protein_coding-exon (ENSMUSG00000021094.10, exon 1 of 1) 161 ENSMUSG00000021094.10 ENSMUSG00000021094 ENSMUST00000221674 Dhrs7 protein_coding Interval_50611 chr14 16566153 16566511 + 0 NA intron (ENSMUSG00000017491.9, intron 1 of 1) protein_coding-intron (ENSMUSG00000017491.9, intron 1 of 7) -9269 ENSMUSG00000114463.1 ENSMUSG00000114463 ENSMUST00000224418 Gm48162 antisense Interval_121447 chr4 155846756 155848053 + 0 NA promoter-TSS (ENSMUSG00000029071.16) protein_coding-promoter-TSS (ENSMUSG00000029071.16) -57 ENSMUSG00000029071.16 ENSMUSG00000029071 ENSMUST00000129450 Dvl1 protein_coding Interval_149626 chr7 100138774 100139338 + 0 NA Intergenic Intergenic -20303 ENSMUSG00000030725.4 ENSMUSG00000030725 ENSMUST00000207825 Lipt2 protein_coding Interval_30492 chr11 94729726 94730728 + 0 NA Intergenic Intergenic -11555 ENSMUSG00000020870.7 ENSMUSG00000020870 ENSMUST00000188741 Cdc34b protein_coding Interval_412 chr1 5022607 5023637 + 0 NA intron (ENSMUSG00000002459.17, intron 1 of 5) protein_coding-intron (ENSMUSG00000002459.17, intron 1 of 5) -3743 ENSMUSG00000002459.17 ENSMUSG00000002459 ENSMUST00000133521 Rgs20 protein_coding Interval_133223 chr5 150664968 150666070 + 0 NA promoter-TSS (ENSMUSG00000029655.17) protein_coding-promoter-TSS (ENSMUSG00000029655.17) 664 ENSMUSG00000029655.17 ENSMUSG00000029655 ENSMUST00000201390 N4bp2l2 protein_coding Interval_34311 chr12 3301159 3301458 + 0 NA intron (ENSMUSG00000020671.9, intron 1 of 5) protein_coding-intron (ENSMUSG00000020671.9, intron 1 of 5) 8661 ENSMUSG00000020671.9 ENSMUSG00000020671 ENSMUST00000021001 Rab10 protein_coding Interval_67285 chr16 45437485 45437715 + 0 NA intron (ENSMUSG00000053182.11, intron 2 of 3) protein_coding-intron (ENSMUSG00000053182.11, intron 3 of 4) -8094 ENSMUSG00000081303.2 ENSMUSG00000081303 ENSMUST00000121567 Gm16011 processed_pseudogene Interval_6313 chr1 105801225 105801630 + 0 NA intron (ENSMUSG00000026321.7, intron 1 of 3) protein_coding-intron (ENSMUSG00000026321.7, intron 1 of 9) 20677 ENSMUSG00000026321.7 ENSMUSG00000026321 ENSMUST00000187658 Tnfrsf11a protein_coding Interval_110161 chr3 153889537 153889757 + 0 NA intron (ENSMUSG00000005493.15, intron 6 of 20) protein_coding-intron (ENSMUSG00000005493.15, intron 5 of 19) -9404 ENSMUSG00000005493.15 ENSMUSG00000005493 ENSMUST00000190449 Msh4 protein_coding Interval_123253 chr5 30913055 30913608 + 0 NA promoter-TSS (ENSMUSG00000029163.9) protein_coding-promoter-TSS (ENSMUSG00000029163.9) -5543 ENSMUSG00000038803.7 ENSMUSG00000038803 ENSMUST00000132034 Ost4 protein_coding Interval_49793 chr13 115346683 115347012 + 0 NA Intergenic Intergenic 64646 ENSMUSG00000114471.1 ENSMUSG00000114471 ENSMUST00000224035 Gm47891 processed_pseudogene Interval_113529 chr4 55583485 55584080 + 0 NA intron (ENSMUSG00000066176.3, intron 1 of 1) lincRNA-intron (ENSMUSG00000066176.3, intron 1 of 1) 20517 ENSMUSG00000066176.3 ENSMUSG00000066176 ENSMUST00000135987 Gm12511 lincRNA Interval_140100 chr6 114164737 114165772 + 0 NA intron (ENSMUSG00000030307.8, intron 5 of 13) protein_coding-intron (ENSMUSG00000030307.8, intron 5 of 13) 4269 ENSMUSG00000108186.1 ENSMUSG00000108186 ENSMUST00000204938 Gm8132 processed_pseudogene Interval_136408 chr6 54199576 54200474 + 0 NA intron (ENSMUSG00000004633.17, intron 3 of 4) protein_coding-intron (ENSMUSG00000004633.17, intron 3 of 12) -22342 ENSMUSG00000080205.2 ENSMUSG00000080205 ENSMUST00000112504 Gm15526 processed_pseudogene Interval_156379 chr8 47828212 47828407 + 0 NA exon (ENSMUSG00000031563.8, exon 23 of 23) protein_coding-exon (ENSMUSG00000031563.8, exon 23 of 23) 3827 ENSMUSG00000038064.7 ENSMUSG00000038064 ENSMUST00000038693 Cldn22 protein_coding Interval_6798 chr1 119533758 119533968 + 0 NA intron (ENSMUSG00000101731.1, intron 3 of 3) lincRNA-intron (ENSMUSG00000101731.1, intron 1 of 1) 2302 ENSMUSG00000101731.1 ENSMUSG00000101731 ENSMUST00000186206 3830432H09Rik lincRNA Interval_72690 chr17 31575163 31575368 + 0 NA intron (ENSMUSG00000006705.13, intron 1 of 10) protein_coding-intron (ENSMUSG00000006705.13, intron 1 of 10) 8102 ENSMUSG00000118239.1 ENSMUSG00000118239 ENSMUST00000236000 Gm50107 sense_intronic Interval_69249 chr16 91661509 91662226 + 0 NA intron (ENSMUSG00000022961.18, intron 1 of 10) protein_coding-intron (ENSMUSG00000022961.18, intron 3 of 4) -10396 ENSMUSG00000022961.18 ENSMUSG00000022961 ENSMUST00000151503 Son protein_coding Interval_77209 chr17 87366262 87367136 + 0 NA intron (ENSMUSG00000036918.16, intron 17 of 18) protein_coding-intron (ENSMUSG00000036918.16, intron 18 of 19) -2237 ENSMUSG00000089755.1 ENSMUSG00000089755 ENSMUST00000159031 0610012D04Rik antisense Interval_70490 chr17 10739921 10740438 + 0 NA intron (ENSMUSG00000037196.6, intron 2 of 4) protein_coding-intron (ENSMUSG00000037196.6, intron 2 of 4) -67655 ENSMUSG00000089907.2 ENSMUSG00000089907 ENSMUST00000159155 Gm16169 processed_transcript Interval_84081 chr19 7096189 7096520 + 0 NA exon (ENSMUSG00000047787.8, exon 2 of 2) protein_coding-exon (ENSMUSG00000047787.8, exon 2 of 2) -7933 ENSMUSG00000117901.1 ENSMUSG00000117901 ENSMUST00000236559 AC109619.1 antisense Interval_82388 chr18 73615514 73616004 + 0 NA Intergenic Intergenic 4243 ENSMUSG00000064527.1 ENSMUSG00000064527 ENSMUST00000082593 Gm26438 misc_RNA Interval_51000 chr14 21554558 21555128 + 0 NA intron (ENSMUSG00000021767.19, intron 2 of 5) protein_coding-intron (ENSMUSG00000021767.19, intron 2 of 16) 37968 ENSMUSG00000021767.19 ENSMUSG00000021767 ENSMUST00000226589 Kat6b protein_coding Interval_16189 chr10 61331049 61331254 + 0 NA intron (ENSMUSG00000020092.9, intron 3 of 3) protein_coding-intron (ENSMUSG00000020092.9, intron 18 of 19) 11176 ENSMUSG00000020092.9 ENSMUSG00000020092 ENSMUST00000219132 Pald1 protein_coding Interval_160103 chr8 106451210 106452255 + 0 NA Intergenic Intergenic 36405 ENSMUSG00000031907.9 ENSMUSG00000031907 ENSMUST00000212874 Zfp90 protein_coding Interval_48871 chr13 104191058 104191322 + 0 NA intron (ENSMUSG00000021712.15, intron 5 of 9) protein_coding-intron (ENSMUSG00000021712.15, intron 6 of 10) 12351 ENSMUSG00000021712.15 ENSMUSG00000021712 ENSMUST00000069174 Trim23 protein_coding Interval_150634 chr7 112976561 112977321 + 0 NA Intergenic Intergenic -4058 ENSMUSG00000110109.1 ENSMUSG00000110109 ENSMUST00000209602 Gm5599 processed_pseudogene Interval_110681 chr4 6365268 6366251 + 0 NA promoter-TSS (ENSMUSG00000028249.15) protein_coding-promoter-TSS (ENSMUSG00000028249.15) 50 ENSMUSG00000028249.15 ENSMUSG00000028249 ENSMUST00000153861 Sdcbp protein_coding Interval_89112 chr2 16635166 16635541 + 0 NA intron (ENSMUSG00000026748.13, intron 3 of 12) protein_coding-intron (ENSMUSG00000026748.13, intron 4 of 13) -3343 ENSMUSG00000026748.13 ENSMUSG00000026748 ENSMUST00000126173 Plxdc2 protein_coding Interval_103304 chr3 38360413 38361176 + 0 NA Intergenic Intergenic -8604 ENSMUSG00000106008.1 ENSMUSG00000106008 ENSMUST00000196616 Gm42920 lincRNA Interval_167218 chr9 66265651 66266221 + 0 NA intron (ENSMUSG00000032380.9, intron 8 of 9) protein_coding-intron (ENSMUSG00000032380.9, intron 9 of 11) -84514 ENSMUSG00000038664.16 ENSMUSG00000038664 ENSMUST00000130854 Herc1 protein_coding Interval_99676 chr2 164126271 164126766 + 0 NA intron (ENSMUSG00000018209.15, intron 2 of 2) protein_coding-intron (ENSMUSG00000018209.15, intron 10 of 10) -9185 ENSMUSG00000085538.1 ENSMUSG00000085538 ENSMUST00000149285 Gm11455 antisense Interval_1133 chr1 15919242 15919435 + 0 NA Intergenic Intergenic -26616 ENSMUSG00000032719.4 ENSMUSG00000032719 ENSMUST00000040695 Sbspon protein_coding Interval_97104 chr2 131253856 131254692 + 0 NA Intergenic Intergenic -8294 ENSMUSG00000037514.17 ENSMUSG00000037514 ENSMUST00000183349 Pank2 protein_coding Interval_132966 chr5 148994553 148995414 + 0 NA TTS (ENSMUSG00000085971.4) processed_transcript-TTS (ENSMUSG00000085971.4) 164 ENSMUSG00000106892.1 ENSMUSG00000106892 ENSMUST00000134031 Gm42791 protein_coding Interval_55993 chr14 103728508 103729605 + 0 NA Intergenic Intergenic -29614 ENSMUSG00000089707.1 ENSMUSG00000089707 ENSMUST00000160117 Slain1os antisense Interval_29083 chr11 80214604 80215403 + 0 NA intron (ENSMUSG00000017686.17, intron 1 of 14) protein_coding-intron (ENSMUSG00000017686.17, intron 1 of 19) 30780 ENSMUSG00000020707.6 ENSMUSG00000020707 ENSMUST00000134909 Rnf135 protein_coding Interval_22965 chr11 18107105 18107447 + 0 NA Intergenic Intergenic 11290 ENSMUSG00000085453.1 ENSMUSG00000085453 ENSMUST00000150694 Gm12018 lincRNA Interval_40508 chr12 105354483 105355395 + 0 NA intron (ENSMUSG00000097929.9, intron 2 of 3) protein_coding-intron (ENSMUSG00000097929.9, intron 2 of 2) 21069 ENSMUSG00000097929.9 ENSMUSG00000097929 ENSMUST00000180503 Tunar protein_coding Interval_57184 chr15 7194038 7194575 + 0 NA exon (ENSMUSG00000054263.12, exon 19 of 19) protein_coding-exon (ENSMUSG00000054263.12, exon 19 of 19) 60462 ENSMUSG00000042961.13 ENSMUSG00000042961 ENSMUST00000159726 Egflam protein_coding Interval_37850 chr12 72527456 72528127 + 0 NA intron (ENSMUSG00000021090.16, intron 1 of 1) protein_coding-intron (ENSMUSG00000021090.16, intron 7 of 7) -8592 ENSMUSG00000034501.7 ENSMUSG00000034501 ENSMUST00000044352 Pcnx4 protein_coding Interval_140614 chr6 120099243 120101238 + 0 NA intron (ENSMUSG00000041377.12, intron 1 of 3) protein_coding-intron (ENSMUSG00000041377.12, intron 1 of 3) 6890 ENSMUSG00000041377.12 ENSMUSG00000041377 ENSMUST00000035244 Ninj2 protein_coding Interval_156456 chr8 48405182 48405647 + 0 NA intron (ENSMUSG00000031561.16, intron 1 of 2) protein_coding-intron (ENSMUSG00000031561.16, intron 3 of 28) -134429 ENSMUSG00000110480.1 ENSMUSG00000110480 ENSMUST00000212653 Gm32842 processed_pseudogene Interval_29483 chr11 84283170 84283680 + 0 NA intron (ENSMUSG00000020532.18, intron 1 of 7) protein_coding-intron (ENSMUSG00000020532.18, intron 27 of 53) 93832 ENSMUSG00000103122.1 ENSMUSG00000103122 ENSMUST00000194891 Gm37391 TEC Interval_118170 chr4 129344648 129345782 + 0 NA intron (ENSMUSG00000057572.15, intron 6 of 7) protein_coding-intron (ENSMUSG00000057572.15, intron 5 of 5) 9520 ENSMUSG00000057572.15 ENSMUSG00000057572 ENSMUST00000140272 Zbtb8os protein_coding Interval_9846 chr1 163070638 163070954 + 0 NA intron (ENSMUSG00000071890.4, intron 7 of 21) protein_coding-intron (ENSMUSG00000071890.4, intron 7 of 21) 14874 ENSMUSG00000071890.4 ENSMUSG00000071890 ENSMUST00000096608 Mroh9 protein_coding Interval_103916 chr3 54978866 54979251 + 0 NA Intergenic Intergenic -64027 ENSMUSG00000056306.5 ENSMUSG00000056306 ENSMUST00000070342 Sertm1 protein_coding Interval_22848 chr11 16634351 16634705 + 0 NA TTS (ENSMUSG00000101316.1) processed_pseudogene-TTS (ENSMUSG00000101316.1) 1538 ENSMUSG00000101316.1 ENSMUSG00000101316 ENSMUST00000118481 Gm12663 processed_pseudogene Interval_85859 chr19 32462413 32462627 + 0 NA Intergenic Intergenic 4058 ENSMUSG00000062456.4 ENSMUSG00000062456 ENSMUST00000078034 Rpl9-ps6 protein_coding Interval_23696 chr11 24689515 24690448 + 0 NA intron (ENSMUSG00000087085.1, intron 2 of 3) lincRNA-intron (ENSMUSG00000087085.1, intron 2 of 3) -10270 ENSMUSG00000080631.1 ENSMUSG00000080631 ENSMUST00000116981 Gm25507 miRNA Interval_19895 chr10 110991577 110992575 + 0 NA intron (ENSMUSG00000035798.14, intron 1 of 16) protein_coding-intron (ENSMUSG00000035798.14, intron 1 of 16) 17919 ENSMUSG00000035798.14 ENSMUSG00000035798 ENSMUST00000218981 Zdhhc17 protein_coding Interval_106479 chr3 96600729 96601668 + 0 NA promoter-TSS (ENSMUSG00000049288.4) protein_coding-promoter-TSS (ENSMUSG00000049288.4) 4562 ENSMUSG00000049097.9 ENSMUSG00000049097 ENSMUST00000058943 Ankrd34a protein_coding Interval_86750 chr19 43610406 43610740 + 0 NA promoter-TSS (ENSMUSG00000092250.1) lincRNA-promoter-TSS (ENSMUSG00000092250.1) 52 ENSMUSG00000092250.1 ENSMUSG00000092250 ENSMUST00000172872 Gm20467 lincRNA Interval_100299 chr2 168252390 168253236 + 0 NA Intergenic Intergenic -10383 ENSMUSG00000083342.1 ENSMUSG00000083342 ENSMUST00000122080 Gm14237 processed_pseudogene Interval_83601 chr18 90463433 90463662 + 0 NA intron (ENSMUSG00000117805.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000117805.1, intron 1 of 1) 19913 ENSMUSG00000117805.1 ENSMUSG00000117805 ENSMUST00000237124 Gm18280 lincRNA Interval_121599 chr5 3782270 3783079 + 0 NA intron (ENSMUSG00000040351.11, intron 1 of 5) protein_coding-intron (ENSMUSG00000040351.11, intron 1 of 19) 12816 ENSMUSG00000040351.11 ENSMUSG00000040351 ENSMUST00000199763 Ankib1 protein_coding Interval_119249 chr4 136450233 136450690 + 0 NA Intergenic Intergenic -11789 ENSMUSG00000066178.4 ENSMUSG00000066178 ENSMUST00000084593 6030445D17Rik lincRNA Interval_95007 chr2 102963112 102963319 + 0 NA Intergenic Intergenic -61757 ENSMUSG00000005087.17 ENSMUSG00000005087 ENSMUST00000124624 Cd44 protein_coding Interval_37169 chr12 59150529 59151020 + 0 NA intron (ENSMUSG00000021000.17, intron 14 of 29) protein_coding-intron (ENSMUSG00000021000.17, intron 9 of 24) 16702 ENSMUSG00000077505.1 ENSMUSG00000077505 ENSMUST00000104317 Gm24233 snoRNA Interval_153651 chr8 4286481 4287814 + 0 NA exon (ENSMUSG00000040028.10, exon 6 of 6) protein_coding-exon (ENSMUSG00000040028.10, exon 6 of 6) -11265 ENSMUSG00000002949.15 ENSMUSG00000002949 ENSMUST00000160371 Timm44 protein_coding Interval_8259 chr1 136773599 136774252 + 0 NA Intergenic Intergenic 15595 ENSMUSG00000104360.1 ENSMUSG00000104360 ENSMUST00000193486 Gm8762 processed_pseudogene Interval_12392 chr1 192874875 192875324 + 0 NA Intergenic Intergenic -13472 ENSMUSG00000102162.1 ENSMUSG00000102162 ENSMUST00000192374 Gm2367 processed_pseudogene Interval_83521 chr18 88801856 88802091 + 0 NA intron (ENSMUSG00000056153.15, intron 2 of 7) protein_coding-intron (ENSMUSG00000056153.15, intron 2 of 7) -25077 ENSMUSG00000117887.1 ENSMUSG00000117887 ENSMUST00000236521 Gm50404 processed_pseudogene Interval_107583 chr3 108681196 108681768 + 0 NA intron (ENSMUSG00000027883.15, intron 14 of 14) protein_coding-intron (ENSMUSG00000027883.15, intron 14 of 14) 13631 ENSMUSG00000027884.16 ENSMUSG00000027884 ENSMUST00000156811 Clcc1 protein_coding Interval_24291 chr11 32140949 32142340 + 0 NA Intergenic Intergenic -40416 ENSMUSG00000086386.1 ENSMUSG00000086386 ENSMUST00000145338 Gm12108 lincRNA Interval_25027 chr11 43369113 43369912 + 0 NA Intergenic Intergenic 4949 ENSMUSG00000065601.1 ENSMUSG00000065601 ENSMUST00000083667 Mir146 miRNA Interval_68893 chr16 87935746 87936037 + 0 NA exon (ENSMUSG00000022935.16, exon 13 of 13) protein_coding-exon (ENSMUSG00000022935.16, exon 13 of 13) 148319 ENSMUSG00000055972.5 ENSMUSG00000055972 ENSMUST00000189929 2810407A14Rik lincRNA Interval_72903 chr17 33092253 33093204 + 0 NA intron (ENSMUSG00000067424.13, intron 1 of 3) protein_coding-intron (ENSMUSG00000067424.13, intron 1 of 3) 3164 ENSMUSG00000067424.13 ENSMUSG00000067424 ENSMUST00000140829 Zfp563 protein_coding Interval_87778 chr19 55805041 55806048 + 0 NA intron (ENSMUSG00000024985.20, intron 4 of 14) protein_coding-intron (ENSMUSG00000024985.20, intron 3 of 11) -36128 ENSMUSG00000099746.1 ENSMUSG00000099746 ENSMUST00000190974 Ppnr sense_intronic Interval_128433 chr5 113292296 113292605 + 0 NA intron (ENSMUSG00000042216.13, intron 2 of 17) protein_coding-intron (ENSMUSG00000042216.13, intron 2 of 24) -13114 ENSMUSG00000042216.13 ENSMUSG00000042216 ENSMUST00000140981 Sgsm1 protein_coding Interval_124559 chr5 50722761 50723019 + 0 NA Intergenic Intergenic 43174 ENSMUSG00000106038.1 ENSMUSG00000106038 ENSMUST00000199640 Gm4962 transcribed_processed_pseudogene Interval_165309 chr9 46184927 46185869 + 0 NA intron (ENSMUSG00000034135.15, intron 3 of 20) protein_coding-intron (ENSMUSG00000034135.15, intron 6 of 22) -43323 ENSMUSG00000032083.8 ENSMUSG00000032083 ENSMUST00000132155 Apoa1 protein_coding Interval_153949 chr8 11450508 11451051 + 0 NA Intergenic Intergenic 8963 ENSMUSG00000110245.1 ENSMUSG00000110245 ENSMUST00000209418 Gm20100 TEC Interval_87207 chr19 46887806 46889146 + 0 NA TTS (ENSMUSG00000025041.17) protein_coding-TTS (ENSMUSG00000025041.17) 6981 ENSMUSG00000117814.1 ENSMUSG00000117814 ENSMUST00000236822 Gm50431 lincRNA Interval_53569 chr14 59401605 59401794 + 0 NA TTS (ENSMUSG00000071350.12) protein_coding-TTS (ENSMUSG00000071350.12) -6318 ENSMUSG00000091144.2 ENSMUSG00000091144 ENSMUST00000166912 Phf11c protein_coding Interval_38977 chr12 84235467 84236848 + 0 NA Intergenic Intergenic -17276 ENSMUSG00000042507.15 ENSMUSG00000042507 ENSMUST00000130038 Elmsan1 protein_coding Interval_61158 chr15 79545897 79547577 + 0 NA promoter-TSS (ENSMUSG00000055065.7) protein_coding-promoter-TSS (ENSMUSG00000055065.7) -182 ENSMUSG00000055065.7 ENSMUSG00000055065 ENSMUST00000229431 Ddx17 protein_coding Interval_142564 chr6 143307458 143307656 + 0 NA Intergenic Intergenic 61664 ENSMUSG00000072679.10 ENSMUSG00000072679 ENSMUST00000160951 D6Ertd474e lincRNA Interval_15642 chr10 52742567 52742923 + 0 NA intron (ENSMUSG00000038602.7, intron 1 of 7) protein_coding-intron (ENSMUSG00000038602.7, intron 1 of 7) 48907 ENSMUSG00000111918.1 ENSMUSG00000111918 ENSMUST00000220050 Gm47624 TEC Interval_117465 chr4 123916847 123918130 + 0 NA promoter-TSS (ENSMUSG00000028646.16) protein_coding-promoter-TSS (ENSMUSG00000028646.16) 14 ENSMUSG00000028646.16 ENSMUSG00000028646 ENSMUST00000155454 Rragc protein_coding Interval_171127 chr9 114663711 114664541 + 0 NA Intergenic Intergenic -16091 ENSMUSG00000111744.1 ENSMUSG00000111744 ENSMUST00000214787 Gm7780 processed_pseudogene Interval_35235 chr12 18579893 18580345 + 0 NA Intergenic Intergenic 20504 ENSMUSG00000113604.1 ENSMUSG00000113604 ENSMUST00000222589 Gm19786 unprocessed_pseudogene Interval_40382 chr12 104537850 104538940 + 0 NA Intergenic Intergenic 18427 ENSMUSG00000112954.1 ENSMUSG00000112954 ENSMUST00000222329 Gm49732 lincRNA Interval_137585 chr6 73758692 73759762 + 0 NA Intergenic Intergenic 126622 ENSMUSG00000107646.1 ENSMUSG00000107646 ENSMUST00000203582 Gm44225 processed_pseudogene Interval_34599 chr12 6682628 6682925 + 0 NA Intergenic Intergenic -16977 ENSMUSG00000112454.1 ENSMUSG00000112454 ENSMUST00000220141 Gm48619 lincRNA Interval_72551 chr17 30635078 30636128 + 0 NA promoter-TSS (ENSMUSG00000033826.10) protein_coding-promoter-TSS (ENSMUSG00000033826.10) -8698 ENSMUSG00000099474.1 ENSMUSG00000099474 ENSMUST00000188852 1700097N02Rik bidirectional_promoter_lncRNA Interval_65229 chr16 20695769 20696397 + 0 NA promoter-TSS (ENSMUSG00000050821.14) protein_coding-promoter-TSS (ENSMUSG00000050821.14) 2832 ENSMUSG00000050821.14 ENSMUSG00000050821 ENSMUST00000128273 Fam131a protein_coding Interval_92747 chr2 65039399 65039686 + 0 NA Intergenic Intergenic -63773 ENSMUSG00000026888.14 ENSMUSG00000026888 ENSMUST00000146807 Grb14 protein_coding Interval_31573 chr11 101450551 101452276 + 0 NA intron (ENSMUSG00000010358.13, intron 1 of 4) protein_coding-intron (ENSMUSG00000010358.13, intron 1 of 6) 2843 ENSMUSG00000010358.13 ENSMUSG00000010358 ENSMUST00000131024 Ifi35 protein_coding Interval_21041 chr10 125053529 125053735 + 0 NA Intergenic Intergenic 57649 ENSMUSG00000112283.1 ENSMUSG00000112283 ENSMUST00000219518 Gm36719 lincRNA Interval_43435 chr13 30931673 30932177 + 0 NA intron (ENSMUSG00000021357.14, intron 4 of 6) protein_coding-intron (ENSMUSG00000021357.14, intron 4 of 27) 15834 ENSMUSG00000076430.1 ENSMUSG00000076430 ENSMUST00000102943 Hus1b protein_coding Interval_165649 chr9 50681873 50682450 + 0 NA exon (ENSMUSG00000032064.17, exon 16 of 20) protein_coding-exon (ENSMUSG00000032064.17, exon 16 of 20) 15610 ENSMUSG00000032064.17 ENSMUSG00000032064 ENSMUST00000118707 Dixdc1 protein_coding Interval_112069 chr4 34230896 34231714 + 0 NA Intergenic Intergenic 100451 ENSMUSG00000087602.1 ENSMUSG00000087602 ENSMUST00000152086 Gm12753 lincRNA Interval_91740 chr2 48960870 48961564 + 0 NA intron (ENSMUSG00000036792.12, intron 2 of 14) protein_coding-intron (ENSMUSG00000036792.12, intron 1 of 10) -51204 ENSMUSG00000026761.12 ENSMUSG00000026761 ENSMUST00000123271 Orc4 protein_coding Interval_41539 chr12 116138645 116139356 + 0 NA promoter-TSS (ENSMUSG00000093765.7) antisense-promoter-TSS (ENSMUSG00000093765.7) -352 ENSMUSG00000093765.7 ENSMUSG00000093765 ENSMUST00000177059 Gm20658 antisense Interval_94847 chr2 96775476 96775718 + 0 NA intron (ENSMUSG00000050587.14, intron 2 of 7) protein_coding-intron (ENSMUSG00000050587.14, intron 2 of 6) -224027 ENSMUSG00000091288.1 ENSMUSG00000091288 ENSMUST00000171924 Gm17075 processed_pseudogene Interval_31528 chr11 101180983 101181309 + 0 NA intron (ENSMUSG00000017167.6, intron 8 of 23) protein_coding-intron (ENSMUSG00000017167.6, intron 8 of 23) -5703 ENSMUSG00000044052.3 ENSMUSG00000044052 ENSMUST00000062759 Ccr10 protein_coding Interval_145732 chr7 37916323 37916745 + 0 NA Intergenic Intergenic -92187 ENSMUSG00000064591.1 ENSMUSG00000064591 ENSMUST00000082657 Gm22302 snRNA Interval_139329 chr6 98944055 98944320 + 0 NA intron (ENSMUSG00000030067.17, intron 11 of 14) protein_coding-intron (ENSMUSG00000030067.17, intron 12 of 15) -83372 ENSMUSG00000107514.1 ENSMUSG00000107514 ENSMUST00000203192 Gm32381 processed_pseudogene Interval_11119 chr1 179500637 179500839 + 0 NA intron (ENSMUSG00000055067.15, intron 1 of 11) protein_coding-intron (ENSMUSG00000055067.15, intron 1 of 5) 17267 ENSMUSG00000055067.15 ENSMUSG00000055067 ENSMUST00000194237 Smyd3 protein_coding Interval_108111 chr3 121558770 121560565 + 0 NA Intergenic Intergenic 28038 ENSMUSG00000097124.2 ENSMUSG00000097124 ENSMUST00000180804 A530020G20Rik antisense Interval_42776 chr13 19371789 19372947 + 0 NA exon (ENSMUSG00000003062.13, exon 3 of 3) protein_coding-exon (ENSMUSG00000003062.13, exon 3 of 3) 23085 ENSMUSG00000105848.1 ENSMUSG00000105848 ENSMUST00000196136 Gm42683 TEC Interval_71060 chr17 17566928 17567691 + 0 NA intron (ENSMUSG00000023845.7, intron 8 of 11) protein_coding-intron (ENSMUSG00000023845.7, intron 7 of 17) 27467 ENSMUSG00000116796.1 ENSMUSG00000116796 ENSMUST00000232626 Gm49784 TEC Interval_55432 chr14 87209823 87210022 + 0 NA Intergenic Intergenic -9848 ENSMUSG00000102284.1 ENSMUSG00000102284 ENSMUST00000194560 Gm37002 TEC Interval_101657 chr3 8631760 8632392 + 0 NA exon (ENSMUSG00000104102.1, exon 3 of 3) lincRNA-exon (ENSMUSG00000104102.1, exon 3 of 3) 4025 ENSMUSG00000104102.1 ENSMUSG00000104102 ENSMUST00000191988 Gm32496 lincRNA Interval_108635 chr3 129680316 129680843 + 0 NA intron (ENSMUSG00000028017.7, intron 17 of 17) protein_coding-intron (ENSMUSG00000028017.7, intron 23 of 23) 3662 ENSMUSG00000092701.1 ENSMUSG00000092701 ENSMUST00000174960 Gm24515 miRNA Interval_144630 chr7 27232756 27233492 + 0 NA promoter-TSS (ENSMUSG00000003762.13) protein_coding-promoter-TSS (ENSMUSG00000003762.13) -4463 ENSMUSG00000003752.9 ENSMUSG00000003752 ENSMUST00000206441 Itpkc protein_coding Interval_94486 chr2 91602495 91602778 + 0 NA intron (ENSMUSG00000040549.16, intron 34 of 41) protein_coding-intron (ENSMUSG00000040549.16, intron 34 of 42) 6566 ENSMUSG00000077221.1 ENSMUSG00000077221 ENSMUST00000104033 Snord67 snoRNA Interval_80486 chr18 42628010 42628385 + 0 NA Intergenic Intergenic -5738 ENSMUSG00000117926.1 ENSMUSG00000117926 ENSMUST00000236808 C030004G16Rik lincRNA Interval_157308 chr8 69183673 69184678 + 0 NA promoter-TSS (ENSMUSG00000036306.13) protein_coding-promoter-TSS (ENSMUSG00000036306.13) -1945 ENSMUSG00000036306.13 ENSMUSG00000036306 ENSMUST00000184961 Lzts1 protein_coding Interval_138398 chr6 87864005 87864184 + 0 NA Intergenic Intergenic 12885 ENSMUSG00000107798.1 ENSMUSG00000107798 ENSMUST00000204964 Gm44064 TEC Interval_168894 chr9 88438308 88439673 + 0 NA promoter-TSS (ENSMUSG00000032422.18) protein_coding-promoter-TSS (ENSMUSG00000032422.18) -39 ENSMUSG00000032422.18 ENSMUSG00000032422 ENSMUST00000126563 Snx14 protein_coding Interval_5495 chr1 89252135 89252619 + 0 NA Intergenic Intergenic 4604 ENSMUSG00000102083.1 ENSMUSG00000102083 ENSMUST00000191231 Gm5259 processed_pseudogene Interval_141779 chr6 134413898 134417298 + 0 NA intron (ENSMUSG00000030200.13, intron 1 of 2) protein_coding-intron (ENSMUSG00000030200.13, intron 2 of 6) 8755 ENSMUSG00000107767.1 ENSMUSG00000107767 ENSMUST00000205104 Gm44448 lincRNA Interval_158267 chr8 80723249 80723512 + 0 NA intron (ENSMUSG00000031715.14, intron 9 of 19) protein_coding-intron (ENSMUSG00000031715.14, intron 9 of 23) 5757 ENSMUSG00000110142.1 ENSMUSG00000110142 ENSMUST00000209804 Gm45872 TEC Interval_20856 chr10 121532416 121533749 + 0 NA promoter-TSS (ENSMUSG00000118419.1) unprocessed_pseudogene-promoter-TSS (ENSMUSG00000118419.1) -706 ENSMUSG00000118419.1 ENSMUSG00000118419 ENSMUST00000238643 Gm50454 unprocessed_pseudogene Interval_13783 chr10 22072837 22073216 + 0 NA Intergenic Intergenic -4947 ENSMUSG00000069712.5 ENSMUSG00000069712 ENSMUST00000092672 4930444G20Rik protein_coding Interval_41449 chr12 114124897 114125129 + 0 NA Intergenic Intergenic 2971 ENSMUSG00000102515.1 ENSMUSG00000102515 ENSMUST00000191949 Ighv12-2 IG_V_pseudogene Interval_11230 chr1 180330523 180333003 + 0 NA intron (ENSMUSG00000038855.10, intron 1 of 7) protein_coding-intron (ENSMUSG00000038855.10, intron 1 of 7) -2103 ENSMUSG00000038855.10 ENSMUSG00000038855 ENSMUST00000195043 Itpkb protein_coding Interval_168940 chr9 89230868 89231376 + 0 NA intron (ENSMUSG00000066442.17, intron 3 of 3) protein_coding-intron (ENSMUSG00000066442.17, intron 2 of 2) 31743 ENSMUSG00000100838.1 ENSMUSG00000100838 ENSMUST00000138109 Gm29094 protein_coding Interval_67082 chr16 42747478 42747998 + 0 NA intron (ENSMUSG00000075070.6, intron 1 of 3) lincRNA-intron (ENSMUSG00000075070.6, intron 1 of 3) 83812 ENSMUSG00000116679.1 ENSMUSG00000116679 ENSMUST00000232064 Gm49739 processed_pseudogene Interval_127525 chr5 104833533 104833743 + 0 NA intron (ENSMUSG00000072774.10, intron 1 of 4) protein_coding-intron (ENSMUSG00000072774.10, intron 1 of 4) 26155 ENSMUSG00000072774.10 ENSMUSG00000072774 ENSMUST00000191135 Zfp951 protein_coding Interval_73980 chr17 45828720 45829102 + 0 NA Intergenic Intergenic -6588 ENSMUSG00000117139.1 ENSMUSG00000117139 ENSMUST00000233237 Gm35692 lincRNA Interval_84449 chr19 10983011 10983491 + 0 NA TTS (ENSMUSG00000067571.4) protein_coding-TTS (ENSMUSG00000067571.4) -8606 ENSMUSG00000024731.15 ENSMUSG00000024731 ENSMUST00000190246 Ms4a10 protein_coding Interval_110990 chr4 11052489 11053940 + 0 NA intron (ENSMUSG00000050323.14, intron 1 of 1) protein_coding-intron (ENSMUSG00000050323.14, intron 8 of 8) 22969 ENSMUSG00000050323.14 ENSMUSG00000050323 ENSMUST00000141019 Ndufaf6 protein_coding Interval_166628 chr9 61385054 61387131 + 0 NA intron (ENSMUSG00000032280.16, intron 4 of 19) protein_coding-intron (ENSMUSG00000032280.16, intron 4 of 19) 13726 ENSMUSG00000032280.16 ENSMUSG00000032280 ENSMUST00000162281 Tle3 protein_coding Interval_64920 chr16 17236475 17237349 + 0 NA intron (ENSMUSG00000116743.1, intron 1 of 3) protein_coding-intron (ENSMUSG00000050240.16, intron 1 of 2) 3248 ENSMUSG00000050240.16 ENSMUSG00000050240 ENSMUST00000232082 Hic2 protein_coding Interval_89847 chr2 25951298 25952034 + 0 NA intron (ENSMUSG00000026933.17, intron 3 of 14) protein_coding-intron (ENSMUSG00000026933.17, intron 5 of 16) 31616 ENSMUSG00000026933.17 ENSMUSG00000026933 ENSMUST00000127823 Camsap1 protein_coding Interval_42672 chr13 17842869 17844270 + 0 NA Intergenic Intergenic 22623 ENSMUSG00000081285.2 ENSMUSG00000081285 ENSMUST00000118792 Gm18859 processed_pseudogene Interval_44394 chr13 44598619 44599310 + 0 NA Intergenic Intergenic -23218 ENSMUSG00000113730.1 ENSMUSG00000113730 ENSMUST00000221956 Gm47805 lincRNA Interval_84820 chr19 17079033 17079343 + 0 NA intron (ENSMUSG00000039126.10, intron 6 of 19) protein_coding-intron (ENSMUSG00000039126.10, intron 6 of 19) -18791 ENSMUSG00000099316.1 ENSMUSG00000099316 ENSMUST00000183863 Gm27796 misc_RNA Interval_134297 chr6 24642023 24642577 + 0 NA intron (ENSMUSG00000029684.14, intron 1 of 1) protein_coding-intron (ENSMUSG00000029684.14, intron 1 of 10) -14227 ENSMUSG00000029684.14 ENSMUSG00000029684 ENSMUST00000173399 Wasl protein_coding Interval_129862 chr5 122791894 122792168 + 0 NA intron (ENSMUSG00000029472.13, intron 1 of 1) protein_coding-intron (ENSMUSG00000029472.13, intron 13 of 16) 12506 ENSMUSG00000105613.1 ENSMUSG00000105613 ENSMUST00000199279 Gm43684 TEC Interval_32668 chr11 109527955 109528968 + 0 NA intron (ENSMUSG00000020604.13, intron 6 of 11) protein_coding-intron (ENSMUSG00000020604.13, intron 8 of 13) -28637 ENSMUSG00000088106.1 ENSMUSG00000088106 ENSMUST00000157481 Gm22378 snRNA Interval_46026 chr13 60355823 60356304 + 0 NA Intergenic Intergenic 24614 ENSMUSG00000114460.1 ENSMUSG00000114460 ENSMUST00000225199 Gm10779 TEC Interval_174136 chrX 136115452 136116253 + 0 NA TTS (ENSMUSG00000087553.1) processed_transcript-TTS (ENSMUSG00000087553.1) 11249 ENSMUSG00000087553.1 ENSMUSG00000087553 ENSMUST00000147100 5730412P04Rik processed_transcript Interval_21921 chr11 5211889 5212171 + 0 NA intron (ENSMUSG00000020393.16, intron 2 of 3) protein_coding-intron (ENSMUSG00000020393.16, intron 4 of 8) 26418 ENSMUSG00000020393.16 ENSMUSG00000020393 ENSMUST00000151978 Kremen1 protein_coding Interval_149736 chr7 101024440 101025092 + 0 NA Intergenic Intergenic -5898 ENSMUSG00000108895.1 ENSMUSG00000108895 ENSMUST00000208100 Gm45070 processed_pseudogene Interval_55289 chr14 80356110 80356364 + 0 NA Intergenic Intergenic -13752 ENSMUSG00000098125.1 ENSMUSG00000098125 ENSMUST00000182354 Gm9578 processed_pseudogene Interval_25318 chr11 46276511 46277470 + 0 NA intron (ENSMUSG00000020340.16, intron 7 of 30) protein_coding-intron (ENSMUSG00000020340.16, intron 7 of 30) -32796 ENSMUSG00000081078.1 ENSMUSG00000081078 ENSMUST00000117362 Gm12568 processed_pseudogene Interval_156738 chr8 57754790 57755321 + 0 NA Intergenic Intergenic 55281 ENSMUSG00000110162.1 ENSMUSG00000110162 ENSMUST00000209274 Gm45356 lincRNA Interval_155638 chr8 35462692 35463269 + 0 NA Intergenic Intergenic 18428 ENSMUSG00000031527.7 ENSMUSG00000031527 ENSMUST00000210483 Eri1 protein_coding Interval_85984 chr19 34655249 34656752 + 0 NA Intergenic Intergenic 15129 ENSMUSG00000034459.8 ENSMUSG00000034459 ENSMUST00000102824 Ifit1 protein_coding Interval_123288 chr5 31136840 31139304 + 0 NA promoter-TSS (ENSMUSG00000107265.1) antisense-promoter-TSS (ENSMUSG00000107265.1) -728 ENSMUSG00000107265.1 ENSMUSG00000107265 ENSMUST00000201750 Gm15469 antisense Interval_93647 chr2 75588835 75590637 + 0 NA Intergenic Intergenic 43646 ENSMUSG00000082152.1 ENSMUSG00000082152 ENSMUST00000119695 Gm13655 processed_pseudogene Interval_174730 chrX 164262018 164262852 + 0 NA Intergenic Intergenic -4242 ENSMUSG00000031377.11 ENSMUSG00000031377 ENSMUST00000112263 Bmx protein_coding Interval_68432 chr16 76399559 76399886 + 0 NA Intergenic Intergenic 3930 ENSMUSG00000050299.8 ENSMUSG00000050299 ENSMUST00000052867 Gm9843 processed_pseudogene Interval_122039 chr5 14452932 14453188 + 0 NA Intergenic Intergenic 86792 ENSMUSG00000097976.1 ENSMUSG00000097976 ENSMUST00000182496 Gm26918 antisense Interval_50648 chr14 17402703 17403270 + 0 NA Intergenic Intergenic 281483 ENSMUSG00000114769.1 ENSMUSG00000114769 ENSMUST00000224880 Gm48312 processed_pseudogene Interval_79294 chr18 30189780 30190757 + 0 NA Intergenic Intergenic -76981 ENSMUSG00000117465.1 ENSMUSG00000117465 ENSMUST00000234467 Gm49980 lincRNA Interval_85444 chr19 26519052 26519351 + 0 NA Intergenic Intergenic -11551 ENSMUSG00000117803.1 ENSMUSG00000117803 ENSMUST00000236657 Gm50379 processed_pseudogene Interval_52690 chr14 48639361 48639552 + 0 NA exon (ENSMUSG00000115376.1, exon 2 of 2) lincRNA-exon (ENSMUSG00000115376.1, exon 2 of 2) 3315 ENSMUSG00000115376.1 ENSMUSG00000115376 ENSMUST00000227367 Gm35766 lincRNA Interval_107018 chr3 102992561 102993398 + 0 NA Intergenic Intergenic -3197 ENSMUSG00000027854.12 ENSMUSG00000027854 ENSMUST00000196827 Sike1 protein_coding Interval_27671 chr11 69399530 69400154 + 0 NA exon (ENSMUSG00000018476.7, exon 23 of 23) protein_coding-exon (ENSMUSG00000018476.7, exon 23 of 23) -1608 ENSMUSG00000045377.5 ENSMUSG00000045377 ENSMUST00000050140 Tmem88 protein_coding Interval_63910 chr16 4523033 4523520 + 0 NA promoter-TSS (ENSMUSG00000022519.14) protein_coding-promoter-TSS (ENSMUSG00000022519.14) -16032 ENSMUSG00000083585.1 ENSMUSG00000083585 ENSMUST00000122114 Gm15885 processed_pseudogene Interval_45992 chr13 59841968 59843050 + 0 NA Intergenic Intergenic 19243 ENSMUSG00000114354.1 ENSMUSG00000114354 ENSMUST00000224737 Gm34961 lincRNA Interval_164380 chr9 36569065 36569425 + 0 NA Intergenic Intergenic 1544 ENSMUSG00000110880.1 ENSMUSG00000110880 ENSMUST00000214753 Gm48431 unprocessed_pseudogene Interval_82704 chr18 76074685 76075739 + 0 NA intron (ENSMUSG00000044646.15, intron 1 of 2) protein_coding-intron (ENSMUSG00000044646.15, intron 3 of 4) 23259 ENSMUSG00000117797.1 ENSMUSG00000117797 ENSMUST00000236092 2900057B20Rik antisense Interval_164947 chr9 43286800 43287306 + 0 NA Intergenic Intergenic 21774 ENSMUSG00000095385.3 ENSMUSG00000095385 ENSMUST00000210037 D630033O11Rik lincRNA Interval_142460 chr6 142518945 142519528 + 0 NA Intergenic Intergenic -11293 ENSMUSG00000030246.12 ENSMUSG00000030246 ENSMUST00000134191 Ldhb protein_coding Interval_25227 chr11 45582503 45583206 + 0 NA Intergenic Intergenic -56529 ENSMUSG00000077320.1 ENSMUSG00000077320 ENSMUST00000104132 Gm22284 snoRNA Interval_7150 chr1 127238842 127239416 + 0 NA intron (ENSMUSG00000036155.13, intron 1 of 7) protein_coding-intron (ENSMUSG00000036155.13, intron 1 of 17) -2962 ENSMUSG00000104039.1 ENSMUSG00000104039 ENSMUST00000191635 Gm37772 TEC Interval_142410 chr6 141721565 141722787 + 0 NA intron (ENSMUSG00000084927.1, intron 11 of 13) protein_coding-intron (ENSMUSG00000084927.1, intron 11 of 13) -7085 ENSMUSG00000088865.1 ENSMUSG00000088865 ENSMUST00000158240 Gm23069 misc_RNA Interval_121124 chr4 153248628 153248863 + 0 NA Intergenic Intergenic 30569 ENSMUSG00000087454.1 ENSMUSG00000087454 ENSMUST00000126141 Gm13174 lincRNA Interval_164313 chr9 35225425 35225718 + 0 NA intron (ENSMUSG00000050471.17, intron 2 of 3) protein_coding-intron (ENSMUSG00000050471.17, intron 4 of 7) 13677 ENSMUSG00000032042.11 ENSMUSG00000032042 ENSMUST00000132799 Srpr protein_coding Interval_64263 chr16 10009859 10010169 + 0 NA Intergenic Intergenic -15091 ENSMUSG00000059003.12 ENSMUSG00000059003 ENSMUST00000197242 Grin2a protein_coding Interval_125946 chr5 76117751 76118642 + 0 NA Intergenic Intergenic -22504 ENSMUSG00000029233.15 ENSMUSG00000029233 ENSMUST00000124217 Srd5a3 protein_coding Interval_153269 chr7 143086131 143087777 + 0 NA exon (ENSMUSG00000009246.14, exon 5 of 25) protein_coding-exon (ENSMUSG00000009246.14, exon 5 of 25) 7652 ENSMUSG00000009246.14 ENSMUSG00000009246 ENSMUST00000133027 Trpm5 protein_coding Interval_163451 chr9 21502941 21503295 + 0 NA intron (ENSMUSG00000033335.17, intron 16 of 19) protein_coding-intron (ENSMUSG00000033335.17, intron 17 of 20) -6554 ENSMUSG00000065547.1 ENSMUSG00000065547 ENSMUST00000083613 Mir199a-1 miRNA Interval_45569 chr13 55943232 55943701 + 0 NA intron (ENSMUSG00000114493.2, intron 3 of 5) antisense-intron (ENSMUSG00000114493.2, intron 3 of 5) 86768 ENSMUSG00000114229.1 ENSMUSG00000114229 ENSMUST00000225745 Gm47072 processed_pseudogene Interval_105962 chr3 90337832 90338259 + 0 NA TTS (ENSMUSG00000108689.1) TEC-TTS (ENSMUSG00000108689.1) 2650 ENSMUSG00000108689.1 ENSMUSG00000108689 ENSMUST00000199820 Gm45354 TEC Interval_68701 chr16 84813631 84815394 + 0 NA intron (ENSMUSG00000053062.16, intron 5 of 9) protein_coding-intron (ENSMUSG00000053062.16, intron 5 of 9) -3585 ENSMUSG00000088249.1 ENSMUSG00000088249 ENSMUST00000157624 Gm25908 rRNA Interval_146895 chr7 55587221 55587979 + 0 NA Intergenic Intergenic -48853 ENSMUSG00000108363.1 ENSMUSG00000108363 ENSMUST00000206548 Gm44615 processed_pseudogene Interval_81468 chr18 60944913 60946080 + 0 NA intron (ENSMUSG00000024617.16, intron 2 of 6) protein_coding-intron (ENSMUSG00000024617.16, intron 2 of 18) -8377 ENSMUSG00000098247.1 ENSMUSG00000098247 ENSMUST00000183978 Mir7220 miRNA Interval_138653 chr6 90783961 90784857 + 0 NA intron (ENSMUSG00000034312.15, intron 1 of 13) protein_coding-intron (ENSMUSG00000034312.15, intron 1 of 13) -2328 ENSMUSG00000034312.15 ENSMUSG00000034312 ENSMUST00000238855 Iqsec1 protein_coding Interval_126802 chr5 93039706 93040376 + 0 NA Intergenic Intergenic 4981 ENSMUSG00000045314.5 ENSMUSG00000045314 ENSMUST00000061328 Sowahb protein_coding Interval_174069 chrX 134267116 134267412 + 0 NA intron (ENSMUSG00000067369.12, intron 2 of 11) protein_coding-intron (ENSMUSG00000067369.12, intron 2 of 3) 9663 ENSMUSG00000067369.12 ENSMUSG00000067369 ENSMUST00000087540 Trmt2b protein_coding Interval_123634 chr5 34047918 34048719 + 0 NA intron (ENSMUSG00000045102.12, intron 2 of 4) protein_coding-intron (ENSMUSG00000045102.12, intron 18 of 24) 12899 ENSMUSG00000106868.1 ENSMUSG00000106868 ENSMUST00000201502 Gm19798 processed_pseudogene Interval_28704 chr11 77836831 77837045 + 0 NA intron (ENSMUSG00000000631.20, intron 22 of 41) protein_coding-intron (ENSMUSG00000000631.20, intron 20 of 39) 35588 ENSMUSG00000000631.20 ENSMUSG00000000631 ENSMUST00000142571 Myo18a protein_coding Interval_25415 chr11 47988009 47989551 + 0 NA exon (ENSMUSG00000020354.15, exon 1 of 3) protein_coding-exon (ENSMUSG00000020354.15, exon 1 of 3) -76235 ENSMUSG00000065804.1 ENSMUSG00000065804 ENSMUST00000083870 Gm23039 snRNA Interval_138032 chr6 84422612 84423861 + 0 NA intron (ENSMUSG00000107797.1, intron 1 of 3) lincRNA-intron (ENSMUSG00000107797.1, intron 1 of 3) 602 ENSMUSG00000107797.1 ENSMUSG00000107797 ENSMUST00000203521 Gm10445 lincRNA Interval_55009 chr14 76855272 76855566 + 0 NA Intergenic Intergenic -6152 ENSMUSG00000115596.1 ENSMUSG00000115596 ENSMUST00000227341 Gm48969 lincRNA Interval_141015 chr6 124394267 124394858 + 0 NA Intergenic Intergenic 5052 ENSMUSG00000005069.12 ENSMUSG00000005069 ENSMUST00000150812 Pex5 protein_coding Interval_158733 chr8 85602276 85603746 + 0 NA exon (ENSMUSG00000110341.1, exon 1 of 1) TEC-exon (ENSMUSG00000110341.1, exon 1 of 1) -2451 ENSMUSG00000109731.1 ENSMUSG00000109731 ENSMUST00000211727 Gm45425 lincRNA Interval_171917 chr9 122529468 122530452 + 0 NA Intergenic Intergenic 5060 ENSMUSG00000111221.1 ENSMUSG00000111221 ENSMUST00000214554 Gm47133 lincRNA Interval_107747 chr3 112951477 112952802 + 0 NA Intergenic Intergenic -67736 ENSMUSG00000105588.1 ENSMUSG00000105588 ENSMUST00000197716 Utp14b-ps1 processed_pseudogene Interval_72297 chr17 29026823 29027325 + 0 NA intron (ENSMUSG00000086154.2, intron 1 of 2) bidirectional_promoter_lncRNA-intron (ENSMUSG00000086154.2, intron 1 of 2) 5494 ENSMUSG00000086154.2 ENSMUSG00000086154 ENSMUST00000233751 Gm16196 bidirectional_promoter_lncRNA Interval_7086 chr1 125607066 125608375 + 0 NA Intergenic Intergenic 47125 ENSMUSG00000026342.10 ENSMUSG00000026342 ENSMUST00000189443 Slc35f5 protein_coding Interval_14037 chr10 25874639 25875038 + 0 NA Intergenic Intergenic -8835 ENSMUSG00000112861.1 ENSMUSG00000112861 ENSMUST00000219770 Gm47930 processed_pseudogene Interval_139099 chr6 95103587 95104372 + 0 NA Intergenic Intergenic -3672 ENSMUSG00000093999.1 ENSMUSG00000093999 ENSMUST00000178307 Gm26501 snRNA Interval_122438 chr5 22641006 22641424 + 0 NA intron (ENSMUSG00000097207.7, intron 3 of 4) lincRNA-intron (ENSMUSG00000097207.7, intron 3 of 4) 3968 ENSMUSG00000092704.1 ENSMUSG00000092704 ENSMUST00000174963 Gm24512 snRNA Interval_99847 chr2 165274881 165275135 + 0 NA Intergenic Intergenic -4832 ENSMUSG00000087800.1 ENSMUSG00000087800 ENSMUST00000157175 Gm25569 snoRNA Interval_121440 chr4 155820998 155821510 + 0 NA intron (ENSMUSG00000029068.16, intron 8 of 10) protein_coding-intron (ENSMUSG00000029068.16, intron 8 of 10) 8753 ENSMUSG00000029068.16 ENSMUSG00000029068 ENSMUST00000126346 Ccnl2 protein_coding Interval_153412 chr7 144512340 144512654 + 0 NA intron (ENSMUSG00000037519.17, intron 1 of 17) protein_coding-intron (ENSMUSG00000037519.17, intron 11 of 30) -25483 ENSMUSG00000037519.17 ENSMUSG00000037519 ENSMUST00000183106 Ppfia1 protein_coding Interval_68964 chr16 89765096 89766186 + 0 NA Intergenic Intergenic 29641 ENSMUSG00000002489.16 ENSMUSG00000002489 ENSMUST00000136760 Tiam1 protein_coding Interval_76905 chr17 84860745 84860941 + 0 NA Intergenic Intergenic 8305 ENSMUSG00000117631.1 ENSMUSG00000117631 ENSMUST00000234899 Gm9400 unprocessed_pseudogene Interval_71640 chr17 25067294 25067564 + 0 NA intron (ENSMUSG00000024168.8, intron 3 of 3) protein_coding-intron (ENSMUSG00000024169.16, intron 18 of 29) 16162 ENSMUSG00000024168.8 ENSMUSG00000024168 ENSMUST00000153745 Tmem204 protein_coding Interval_93142 chr2 70560939 70563847 + 0 NA promoter-TSS (ENSMUSG00000070880.10) protein_coding-promoter-TSS (ENSMUSG00000070880.10) 230 ENSMUSG00000070880.10 ENSMUSG00000070880 ENSMUST00000140478 Gad1 protein_coding Interval_86732 chr19 43480374 43480576 + 0 NA intron (ENSMUSG00000025189.9, intron 7 of 11) protein_coding-intron (ENSMUSG00000025189.9, intron 6 of 10) 8801 ENSMUSG00000025189.9 ENSMUSG00000025189 ENSMUST00000225191 Cnnm1 protein_coding Interval_102566 chr3 27863102 27863817 + 0 NA Intergenic Intergenic -4654 ENSMUSG00000088772.1 ENSMUSG00000088772 ENSMUST00000158147 Gm26040 snoRNA Interval_60329 chr15 72953925 72954139 + 0 NA intron (ENSMUSG00000047921.17, intron 9 of 16) protein_coding-intron (ENSMUSG00000047921.17, intron 9 of 21) 40675 ENSMUSG00000096173.2 ENSMUSG00000096173 ENSMUST00000166418 Gm3150 processed_pseudogene Interval_77017 chr17 85657118 85657679 + 0 NA Intergenic Intergenic 30876 ENSMUSG00000024134.11 ENSMUSG00000024134 ENSMUST00000024947 Six2 protein_coding Interval_164265 chr9 34750740 34751391 + 0 NA intron (ENSMUSG00000032036.15, intron 1 of 15) protein_coding-intron (ENSMUSG00000032036.15, intron 1 of 16) 178444 ENSMUSG00000053889.5 ENSMUSG00000053889 ENSMUST00000066604 Kirrel3os antisense Interval_40915 chr12 109870564 109871179 + 0 NA Intergenic Intergenic 24222 ENSMUSG00000113625.1 ENSMUSG00000113625 ENSMUST00000222259 Gm3379 processed_pseudogene Interval_57553 chr15 12306432 12307569 + 0 NA Intergenic Intergenic -14635 ENSMUSG00000022200.8 ENSMUSG00000022200 ENSMUST00000228671 Golph3 protein_coding Interval_66416 chr16 33739795 33740725 + 0 NA TTS (ENSMUSG00000075254.12) protein_coding-TTS (ENSMUSG00000075254.12) -53777 ENSMUSG00000022824.12 ENSMUSG00000022824 ENSMUST00000023520 Muc13 protein_coding Interval_158817 chr8 86852164 86852375 + 0 NA exon (ENSMUSG00000031652.11, exon 1 of 3) protein_coding-exon (ENSMUSG00000031652.11, exon 1 of 3) 151 ENSMUSG00000031652.11 ENSMUSG00000031652 ENSMUST00000210029 N4bp1 protein_coding Interval_121801 chr5 8382141 8382867 + 0 NA Intergenic Intergenic 40165 ENSMUSG00000002297.16 ENSMUSG00000002297 ENSMUST00000198785 Dbf4 protein_coding Interval_130658 chr5 129526994 129527487 + 0 NA intron (ENSMUSG00000029439.14, intron 7 of 15) protein_coding-intron (ENSMUSG00000029439.14, intron 7 of 17) 22899 ENSMUSG00000029439.14 ENSMUSG00000029439 ENSMUST00000196873 Sfswap protein_coding Interval_135963 chr6 49118336 49118814 + 0 NA intron (ENSMUSG00000029814.10, intron 5 of 9) protein_coding-intron (ENSMUSG00000029814.10, intron 5 of 14) -24364 ENSMUSG00000029814.10 ENSMUSG00000029814 ENSMUST00000203680 Igf2bp3 protein_coding Interval_158824 chr8 86884621 86885425 + 0 NA promoter-TSS (ENSMUSG00000098434.1) lincRNA-promoter-TSS (ENSMUSG00000098434.1) -665 ENSMUSG00000098434.1 ENSMUSG00000098434 ENSMUST00000184161 2010110E17Rik lincRNA Interval_17282 chr10 75559278 75560702 + 0 NA exon (ENSMUSG00000046807.10, exon 1 of 4) protein_coding-exon (ENSMUSG00000046807.10, exon 1 of 4) -6096 ENSMUSG00000046807.10 ENSMUSG00000046807 ENSMUST00000051129 Lrrc75b protein_coding Interval_8301 chr1 137008805 137009133 + 0 NA Intergenic Intergenic -18699 ENSMUSG00000088970.1 ENSMUSG00000088970 ENSMUST00000158345 Gm23763 snRNA Interval_139457 chr6 100305802 100306218 + 0 NA Intergenic Intergenic -19262 ENSMUSG00000072872.3 ENSMUSG00000072872 ENSMUST00000205164 Rybp protein_coding Interval_41344 chr12 112955727 112956401 + 0 NA Intergenic Intergenic -5552 ENSMUSG00000097476.1 ENSMUSG00000097476 ENSMUST00000181436 Gm26583 lincRNA Interval_6824 chr1 119896381 119896611 + 0 NA promoter-TSS (ENSMUSG00000100636.1) processed_pseudogene-promoter-TSS (ENSMUSG00000100636.1) -965 ENSMUSG00000100636.1 ENSMUSG00000100636 ENSMUST00000190750 Gm3551 processed_pseudogene Interval_55727 chr14 99339240 99341021 + 0 NA Intergenic Intergenic 12039 ENSMUSG00000084700.1 ENSMUSG00000084700 ENSMUST00000122751 Gm22984 snRNA Interval_20352 chr10 117049142 117049654 + 0 NA Intergenic Intergenic 4057 ENSMUSG00000060187.4 ENSMUSG00000060187 ENSMUST00000073834 Lrrc10 protein_coding Interval_4255 chr1 72204730 72205851 + 0 NA intron (ENSMUSG00000039395.8, intron 1 of 4) protein_coding-intron (ENSMUSG00000039395.8, intron 1 of 4) 7017 ENSMUSG00000039395.8 ENSMUSG00000039395 ENSMUST00000048860 Mreg protein_coding Interval_97830 chr2 144316891 144318792 + 0 NA TTS (ENSMUSG00000037279.13) protein_coding-TTS (ENSMUSG00000037279.13) 13485 ENSMUSG00000037279.13 ENSMUSG00000037279 ENSMUST00000138582 Ovol2 protein_coding Interval_1371 chr1 21052873 21053377 + 0 NA intron (ENSMUSG00000041779.5, intron 1 of 10) protein_coding-intron (ENSMUSG00000041779.5, intron 1 of 10) -9469 ENSMUSG00000041779.5 ENSMUSG00000041779 ENSMUST00000187210 Tram2 protein_coding Interval_142246 chr6 139873856 139874877 + 0 NA intron (ENSMUSG00000030228.18, intron 12 of 20) protein_coding-intron (ENSMUSG00000030228.18, intron 7 of 15) 43979 ENSMUSG00000107870.1 ENSMUSG00000107870 ENSMUST00000204549 Gm43940 TEC Interval_92908 chr2 68364175 68366475 + 0 NA intron (ENSMUSG00000027030.15, intron 4 of 4) protein_coding-intron (ENSMUSG00000027030.15, intron 8 of 17) 21356 ENSMUSG00000027030.15 ENSMUSG00000027030 ENSMUST00000149581 Stk39 protein_coding Interval_47080 chr13 75462800 75463395 + 0 NA Intergenic Intergenic 16290 ENSMUSG00000113821.1 ENSMUSG00000113821 ENSMUST00000221326 Gm48234 processed_pseudogene Interval_73914 chr17 45461712 45463195 + 0 NA intron (ENSMUSG00000023935.10, intron 1 of 5) protein_coding-intron (ENSMUSG00000023935.10, intron 2 of 7) -3335 ENSMUSG00000061242.6 ENSMUSG00000061242 ENSMUST00000095268 Gm9104 processed_pseudogene Interval_160629 chr8 111189092 111189298 + 0 NA intron (ENSMUSG00000003316.14, intron 6 of 25) protein_coding-intron (ENSMUSG00000003316.14, intron 5 of 24) -5769 ENSMUSG00000076382.1 ENSMUSG00000076382 ENSMUST00000102427 Gm23193 miRNA Interval_67842 chr16 57669243 57669994 + 0 NA intron (ENSMUSG00000068196.5, intron 2 of 3) protein_coding-intron (ENSMUSG00000068196.5, intron 2 of 3) -62754 ENSMUSG00000022748.8 ENSMUSG00000022748 ENSMUST00000232413 Cmss1 protein_coding Interval_166364 chr9 58656576 58656825 + 0 NA intron (ENSMUSG00000032336.17, intron 8 of 8) protein_coding-intron (ENSMUSG00000074269.10, intron 5 of 5) 7569 ENSMUSG00000074269.10 ENSMUSG00000074269 ENSMUST00000186960 Rec114 protein_coding Interval_14701 chr10 39158263 39158759 + 0 NA exon (ENSMUSG00000062074.7, exon 2 of 5) protein_coding-exon (ENSMUSG00000062074.7, exon 2 of 5) 5283 ENSMUSG00000062074.7 ENSMUSG00000062074 ENSMUST00000076713 Ccn6 protein_coding Interval_106691 chr3 98964153 98964900 + 0 NA Intergenic Intergenic -23270 ENSMUSG00000085121.2 ENSMUSG00000085121 ENSMUST00000155540 5730437C11Rik lincRNA Interval_93616 chr2 74994614 74995803 + 0 NA Intergenic Intergenic -59694 ENSMUSG00000084574.1 ENSMUSG00000084574 ENSMUST00000122625 n-R5s198 rRNA Interval_165835 chr9 53669705 53670489 + 0 NA promoter-TSS (ENSMUSG00000032030.16) protein_coding-promoter-TSS (ENSMUSG00000032030.16) -2590 ENSMUSG00000032030.16 ENSMUSG00000032030 ENSMUST00000133872 Cul5 protein_coding Interval_101376 chr2 180892895 180895181 + 0 NA promoter-TSS (ENSMUSG00000065454.2) miRNA-promoter-TSS (ENSMUSG00000065454.2) -2 ENSMUSG00000065454.2 ENSMUSG00000065454 ENSMUST00000083520 Mir124a-3 miRNA Interval_118529 chr4 132308250 132312708 + 0 NA promoter-TSS (ENSMUSG00000080615.1) snoRNA-promoter-TSS (ENSMUSG00000080615.1) -212 ENSMUSG00000080615.1 ENSMUSG00000080615 ENSMUST00000116965 Snord99 snoRNA Interval_119395 chr4 137441358 137441586 + 0 NA Intergenic Intergenic -3077 ENSMUSG00000086845.1 ENSMUSG00000086845 ENSMUST00000140495 Gm13010 antisense Interval_132271 chr5 143808600 143808838 + 0 NA Intergenic Intergenic -9228 ENSMUSG00000029613.15 ENSMUSG00000029613 ENSMUST00000154767 Eif2ak1 protein_coding Interval_52326 chr14 44994261 44995209 + 0 NA intron (ENSMUSG00000037759.6, intron 1 of 1) protein_coding-intron (ENSMUSG00000037759.6, intron 1 of 1) -4934 ENSMUSG00000090709.2 ENSMUSG00000090709 ENSMUST00000228945 Gm17173 antisense Interval_24522 chr11 33991020 33991412 + 0 NA intron (ENSMUSG00000085684.2, intron 4 of 4) protein_coding-intron (ENSMUSG00000053519.17, intron 1 of 3) 1772 ENSMUSG00000053519.17 ENSMUSG00000053519 ENSMUST00000135034 Kcnip1 protein_coding Interval_131909 chr5 140741702 140742148 + 0 NA TTS (ENSMUSG00000050022.16) protein_coding-TTS (ENSMUSG00000050022.16) 17787 ENSMUSG00000050022.16 ENSMUSG00000050022 ENSMUST00000176035 Amz1 protein_coding Interval_17654 chr10 78519979 78520860 + 0 NA promoter-TSS (ENSMUSG00000112224.1) lincRNA-promoter-TSS (ENSMUSG00000112224.1) -200 ENSMUSG00000112224.1 ENSMUSG00000112224 ENSMUST00000220385 Gm47944 lincRNA Interval_91571 chr2 43613538 43614188 + 0 NA intron (ENSMUSG00000026866.16, intron 8 of 12) protein_coding-intron (ENSMUSG00000026866.16, intron 8 of 13) -57067 ENSMUSG00000026866.16 ENSMUSG00000026866 ENSMUST00000148855 Kynu protein_coding Interval_164560 chr9 38672964 38673225 + 0 NA exon (ENSMUSG00000046150.3, exon 1 of 1) protein_coding-exon (ENSMUSG00000046150.3, exon 1 of 1) 1507 ENSMUSG00000046150.3 ENSMUSG00000046150 ENSMUST00000055099 Olfr918 protein_coding Interval_24564 chr11 34489779 34490027 + 0 NA intron (ENSMUSG00000020143.15, intron 25 of 26) protein_coding-intron (ENSMUSG00000020143.15, intron 25 of 51) 175145 ENSMUSG00000069911.11 ENSMUSG00000069911 ENSMUST00000093192 Insyn2b protein_coding Interval_170214 chr9 106242003 106243541 + 0 NA TTS (ENSMUSG00000032786.16) protein_coding-TTS (ENSMUSG00000032786.16) 5098 ENSMUSG00000032786.16 ENSMUSG00000032786 ENSMUST00000215222 Alas1 protein_coding Interval_150736 chr7 114007587 114007945 + 0 NA intron (ENSMUSG00000038156.16, intron 6 of 15) protein_coding-intron (ENSMUSG00000038156.16, intron 6 of 15) -79132 ENSMUSG00000110248.1 ENSMUSG00000110248 ENSMUST00000210417 Gm45615 antisense Interval_135686 chr6 43337652 43337986 + 0 NA Intergenic Intergenic -32684 ENSMUSG00000029736.15 ENSMUSG00000029736 ENSMUST00000172554 Nobox protein_coding Interval_155426 chr8 33499972 33501403 + 0 NA Intergenic Intergenic -16051 ENSMUSG00000009628.14 ENSMUSG00000009628 ENSMUST00000009772 Tex15 protein_coding Interval_165289 chr9 46045041 46045420 + 0 NA intron (ENSMUSG00000034135.15, intron 1 of 24) protein_coding-intron (ENSMUSG00000034135.15, intron 1 of 22) -60447 ENSMUSG00000003131.7 ENSMUSG00000003131 ENSMUST00000214996 Pafah1b2 protein_coding Interval_53630 chr14 60320933 60321274 + 0 NA Intergenic Intergenic 55830 ENSMUSG00000021987.9 ENSMUSG00000021987 ENSMUST00000224164 Mtmr6 protein_coding Interval_4959 chr1 82959961 82960938 + 0 NA exon (ENSMUSG00000114011.1, exon 1 of 1) protein_coding-exon (ENSMUSG00000114011.1, exon 1 of 1) 163 ENSMUSG00000114011.1 ENSMUSG00000114011 ENSMUST00000223536 Gm47955 protein_coding Interval_155146 chr8 27049370 27049817 + 0 NA TTS (ENSMUSG00000031485.15) protein_coding-TTS (ENSMUSG00000031485.15) -1181 ENSMUSG00000031485.15 ENSMUSG00000031485 ENSMUST00000211756 Plpbp protein_coding Interval_3233 chr1 55030900 55031673 + 0 NA Intergenic Intergenic -3892 ENSMUSG00000025982.13 ENSMUSG00000025982 ENSMUST00000188419 Sf3b1 protein_coding Interval_111446 chr4 21721753 21721953 + 0 NA Intergenic Intergenic -5905 ENSMUSG00000028252.20 ENSMUSG00000028252 ENSMUST00000133712 Ccnc protein_coding Interval_171771 chr9 120927143 120927580 + 0 NA intron (ENSMUSG00000086365.2, intron 2 of 2) antisense-intron (ENSMUSG00000086365.2, intron 2 of 2) 3406 ENSMUSG00000086365.2 ENSMUSG00000086365 ENSMUST00000214011 4930593C16Rik antisense Interval_84415 chr19 10740080 10741357 + 0 NA promoter-TSS (ENSMUSG00000067577.8) processed_transcript-promoter-TSS (ENSMUSG00000067577.8) -1716 ENSMUSG00000024669.8 ENSMUSG00000024669 ENSMUST00000237397 Cd5 protein_coding Interval_15983 chr10 59924101 59926117 + 0 NA Intergenic Intergenic 26725 ENSMUSG00000020108.4 ENSMUSG00000020108 ENSMUST00000020308 Ddit4 protein_coding Interval_39835 chr12 98906769 98908108 + 0 NA Intergenic Intergenic -5954 ENSMUSG00000051166.10 ENSMUSG00000051166 ENSMUST00000222128 Eml5 protein_coding Interval_11141 chr1 179609851 179611560 + 0 NA intron (ENSMUSG00000038949.8, intron 9 of 10) protein_coding-intron (ENSMUSG00000038949.8, intron 9 of 10) 64196 ENSMUSG00000038949.8 ENSMUSG00000038949 ENSMUST00000143270 Cnst protein_coding Interval_135257 chr6 37888342 37889524 + 0 NA intron (ENSMUSG00000029833.17, intron 2 of 7) protein_coding-intron (ENSMUSG00000029833.17, intron 1 of 18) 18122 ENSMUSG00000029833.17 ENSMUSG00000029833 ENSMUST00000135387 Trim24 protein_coding Interval_100858 chr2 172938783 172940883 + 0 NA exon (ENSMUSG00000008999.7, exon 1 of 7) protein_coding-exon (ENSMUSG00000008999.7, exon 1 of 7) 259 ENSMUSG00000008999.7 ENSMUSG00000008999 ENSMUST00000137247 Bmp7 protein_coding Interval_25030 chr11 43387922 43388891 + 0 NA Intergenic Intergenic 2924 ENSMUSG00000084889.1 ENSMUSG00000084889 ENSMUST00000153791 Gm12148 lincRNA Interval_55714 chr14 99249622 99249827 + 0 NA intron (ENSMUSG00000022064.10, intron 8 of 8) protein_coding-intron (ENSMUSG00000022064.10, intron 17 of 17) 41912 ENSMUSG00000100172.1 ENSMUSG00000100172 ENSMUST00000186660 Gm4412 processed_pseudogene Interval_163323 chr9 20861736 20862309 + 0 NA Intergenic Intergenic -7255 ENSMUSG00000038884.14 ENSMUSG00000038884 ENSMUST00000176990 Shfl protein_coding Interval_125464 chr5 67361961 67363229 + 0 NA intron (ENSMUSG00000107266.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000107266.1, intron 1 of 1) -2910 ENSMUSG00000107266.1 ENSMUSG00000107266 ENSMUST00000202864 Gm43698 lincRNA Interval_108866 chr3 132840076 132840246 + 0 NA exon (ENSMUSG00000028030.12, exon 26 of 26) protein_coding-exon (ENSMUSG00000028030.12, exon 26 of 26) -2235 ENSMUSG00000106499.1 ENSMUSG00000106499 ENSMUST00000196299 Gm9403 processed_pseudogene Interval_115008 chr4 88407531 88407846 + 0 NA TTS (ENSMUSG00000038368.16) protein_coding-TTS (ENSMUSG00000038368.16) 7338 ENSMUSG00000038368.16 ENSMUSG00000038368 ENSMUST00000107147 Focad protein_coding Interval_27616 chr11 69066524 69067188 + 0 NA Intergenic Intergenic -3998 ENSMUSG00000020895.14 ENSMUSG00000020895 ENSMUST00000125215 Tmem107 protein_coding Interval_132590 chr5 146564471 146564703 + 0 NA Intergenic Intergenic 8451 ENSMUSG00000095557.7 ENSMUSG00000095557 ENSMUST00000110595 Gm3415 protein_coding Interval_105309 chr3 84770323 84771344 + 0 NA intron (ENSMUSG00000102805.5, intron 3 of 9) protein_coding-intron (ENSMUSG00000102805.5, intron 3 of 9) -44933 ENSMUSG00000028086.15 ENSMUSG00000028086 ENSMUST00000029727 Fbxw7 protein_coding Interval_97182 chr2 132102878 132103686 + 0 NA intron (ENSMUSG00000027340.15, intron 1 of 6) protein_coding-intron (ENSMUSG00000027340.15, intron 1 of 15) 3413 ENSMUSG00000082990.1 ENSMUSG00000082990 ENSMUST00000121434 Gm14052 processed_pseudogene Interval_39102 chr12 85054747 85055467 + 0 NA intron (ENSMUSG00000021244.15, intron 8 of 8) protein_coding-intron (ENSMUSG00000021244.15, intron 16 of 20) 12880 ENSMUSG00000021244.15 ENSMUSG00000021244 ENSMUST00000166605 Ylpm1 protein_coding Interval_83682 chr19 3699381 3700225 + 0 NA intron (ENSMUSG00000118249.1, intron 2 of 2) lincRNA-intron (ENSMUSG00000118249.1, intron 2 of 2) 8373 ENSMUSG00000118249.1 ENSMUSG00000118249 ENSMUST00000236650 Gm36608 lincRNA Interval_128155 chr5 111363146 111365084 + 0 NA intron (ENSMUSG00000050017.11, intron 7 of 10) protein_coding-intron (ENSMUSG00000050017.11, intron 7 of 11) 24174 ENSMUSG00000104559.1 ENSMUSG00000104559 ENSMUST00000199149 Gm43118 antisense Interval_28334 chr11 75254461 75254988 + 0 NA intron (ENSMUSG00000045287.6, intron 1 of 1) protein_coding-intron (ENSMUSG00000045287.6, intron 1 of 1) 60941 ENSMUSG00000045287.6 ENSMUSG00000045287 ENSMUST00000102514 Rtn4rl1 protein_coding Interval_110811 chr4 8666354 8667371 + 0 NA Intergenic Intergenic 6720 ENSMUSG00000082122.1 ENSMUSG00000082122 ENSMUST00000120923 Gm11809 processed_pseudogene Interval_146668 chr7 49307650 49308123 + 0 NA intron (ENSMUSG00000052512.17, intron 1 of 6) protein_coding-intron (ENSMUSG00000052512.17, intron 1 of 37) -35588 ENSMUSG00000052512.17 ENSMUSG00000052512 ENSMUST00000183715 Nav2 protein_coding Interval_94171 chr2 84831260 84832272 + 0 NA Intergenic Intergenic 4382 ENSMUSG00000027076.10 ENSMUSG00000027076 ENSMUST00000111631 Timm10 protein_coding Interval_65249 chr16 20836886 20838372 + 0 NA Intergenic Intergenic -14989 ENSMUSG00000099764.1 ENSMUSG00000099764 ENSMUST00000127484 Rps10-ps2 processed_pseudogene Interval_117333 chr4 123036608 123037165 + 0 NA intron (ENSMUSG00000028653.16, intron 1 of 9) protein_coding-intron (ENSMUSG00000028653.16, intron 1 of 10) 20289 ENSMUSG00000028653.16 ENSMUSG00000028653 ENSMUST00000141855 Trit1 protein_coding Interval_144738 chr7 27926965 27927711 + 0 NA promoter-TSS (ENSMUSG00000097455.1) antisense-promoter-TSS (ENSMUSG00000097455.1) -386 ENSMUSG00000097455.1 ENSMUSG00000097455 ENSMUST00000181644 Gm26891 antisense Interval_35409 chr12 21425559 21427085 + 0 NA Intergenic Intergenic 8443 ENSMUSG00000097055.2 ENSMUSG00000097055 ENSMUST00000227598 Gm4419 antisense Interval_123985 chr5 37015578 37016510 + 0 NA Intergenic Intergenic 25602 ENSMUSG00000097686.1 ENSMUSG00000097686 ENSMUST00000180816 Gm26647 antisense Interval_64001 chr16 5165526 5166022 + 0 NA intron (ENSMUSG00000091712.2, intron 3 of 15) protein_coding-intron (ENSMUSG00000091712.2, intron 3 of 15) 18665 ENSMUSG00000091712.2 ENSMUSG00000091712 ENSMUST00000230616 Sec14l5 protein_coding Interval_53440 chr14 57529601 57530622 + 0 NA intron (ENSMUSG00000050222.11, intron 2 of 2) protein_coding-intron (ENSMUSG00000050222.11, intron 2 of 2) 5334 ENSMUSG00000050222.11 ENSMUSG00000050222 ENSMUST00000089494 Il17d protein_coding Interval_110380 chr3 157573859 157574247 + 0 NA intron (ENSMUSG00000040016.16, intron 1 of 1) protein_coding-intron (ENSMUSG00000040016.16, intron 1 of 2) 7153 ENSMUSG00000040016.16 ENSMUSG00000040016 ENSMUST00000173533 Ptger3 protein_coding Interval_131336 chr5 136549340 136551050 + 0 NA intron (ENSMUSG00000029705.17, intron 1 of 1) protein_coding-intron (ENSMUSG00000029705.17, intron 1 of 23) -13718 ENSMUSG00000104369.1 ENSMUSG00000104369 ENSMUST00000192800 Gm38082 TEC Interval_112526 chr4 42860355 42860548 + 0 NA Intergenic Intergenic -3680 ENSMUSG00000078722.2 ENSMUSG00000078722 ENSMUST00000107981 Gm12394 protein_coding Interval_592 chr1 8431424 8432284 + 0 NA intron (ENSMUSG00000025909.16, intron 3 of 4) protein_coding-intron (ENSMUSG00000025909.16, intron 5 of 6) 21637 ENSMUSG00000102647.1 ENSMUSG00000102647 ENSMUST00000192338 Gm38024 TEC Interval_107637 chr3 109065922 109066430 + 0 NA Intergenic Intergenic 10542 ENSMUSG00000105371.1 ENSMUSG00000105371 ENSMUST00000200208 Gm44384 miRNA Interval_97819 chr2 144262501 144263341 + 0 NA intron (ENSMUSG00000027423.15, intron 2 of 13) protein_coding-intron (ENSMUSG00000027423.15, intron 1 of 12) -1195 ENSMUSG00000065725.1 ENSMUSG00000065725 ENSMUST00000083791 Gm26165 snoRNA Interval_112131 chr4 34876997 34878013 + 0 NA intron (ENSMUSG00000039967.14, intron 1 of 7) protein_coding-intron (ENSMUSG00000039967.14, intron 1 of 7) 5425 ENSMUSG00000039967.14 ENSMUSG00000039967 ENSMUST00000047950 Zfp292 protein_coding Interval_115642 chr4 101549883 101551567 + 0 NA exon (ENSMUSG00000028528.17, exon 1 of 19) protein_coding-exon (ENSMUSG00000028528.17, exon 1 of 19) -4370 ENSMUSG00000089446.1 ENSMUSG00000089446 ENSMUST00000158821 Gm22533 misc_RNA Interval_81267 chr18 57029285 57029721 + 0 NA Intergenic Intergenic -54257 ENSMUSG00000024592.15 ENSMUSG00000024592 ENSMUST00000152087 C330018D20Rik protein_coding Interval_156778 chr8 58964193 58964450 + 0 NA Intergenic Intergenic 52064 ENSMUSG00000049946.7 ENSMUSG00000049946 ENSMUST00000160055 BC030500 protein_coding Interval_116670 chr4 116564609 116564836 + 0 NA intron (ENSMUSG00000034042.16, intron 1 of 11) protein_coding-intron (ENSMUSG00000034042.16, intron 1 of 11) -11607 ENSMUSG00000055900.14 ENSMUSG00000055900 ENSMUST00000069674 Tmem69 protein_coding Interval_30212 chr11 90657601 90658234 + 0 NA exon (ENSMUSG00000020541.12, exon 2 of 2) protein_coding-exon (ENSMUSG00000020541.12, exon 2 of 2) 17739 ENSMUSG00000020544.14 ENSMUSG00000020544 ENSMUST00000099960 Cox11 protein_coding Interval_153303 chr7 143474903 143476926 + 0 NA intron (ENSMUSG00000000154.16, intron 1 of 10) protein_coding-intron (ENSMUSG00000000154.16, intron 1 of 10) 2146 ENSMUSG00000000154.16 ENSMUSG00000000154 ENSMUST00000105917 Slc22a18 protein_coding Interval_153509 chr7 145293929 145294240 + 0 NA Intergenic Intergenic -6815 ENSMUSG00000031070.15 ENSMUSG00000031070 ENSMUST00000117718 Mrgprf protein_coding Interval_109319 chr3 138876310 138878186 + 0 NA intron (ENSMUSG00000028152.10, intron 2 of 3) protein_coding-intron (ENSMUSG00000028152.10, intron 2 of 7) -48086 ENSMUSG00000086123.3 ENSMUSG00000086123 ENSMUST00000153140 Gm16060 processed_pseudogene Interval_168085 chr9 76090542 76091748 + 0 NA intron (ENSMUSG00000007908.14, intron 4 of 5) protein_coding-intron (ENSMUSG00000007908.14, intron 7 of 8) 23696 ENSMUSG00000103354.1 ENSMUSG00000103354 ENSMUST00000194758 Gm38083 TEC Interval_95433 chr2 109292069 109292318 + 0 NA exon (ENSMUSG00000027115.14, exon 3 of 3) protein_coding-exon (ENSMUSG00000027115.14, exon 3 of 3) 170 ENSMUSG00000027115.14 ENSMUSG00000027115 ENSMUST00000162515 Kif18a protein_coding Interval_1731 chr1 33106051 33106960 + 0 NA Intergenic Intergenic 3150 ENSMUSG00000100590.1 ENSMUSG00000100590 ENSMUST00000191025 Gm4785 processed_pseudogene Interval_171113 chr9 114610368 114610669 + 0 NA intron (ENSMUSG00000056167.8, intron 13 of 14) protein_coding-intron (ENSMUSG00000056167.8, intron 13 of 19) -8326 ENSMUSG00000087925.1 ENSMUSG00000087925 ENSMUST00000157300 Gm23232 snRNA Interval_127279 chr5 102069043 102070943 + 0 NA promoter-TSS (ENSMUSG00000043940.15) protein_coding-promoter-TSS (ENSMUSG00000043940.15) -225 ENSMUSG00000106492.1 ENSMUSG00000106492 ENSMUST00000196325 Gm29707 lincRNA Interval_63913 chr16 4541505 4542555 + 0 NA promoter-TSS (ENSMUSG00000022519.14) protein_coding-promoter-TSS (ENSMUSG00000022519.14) -216 ENSMUSG00000022519.14 ENSMUSG00000022519 ENSMUST00000230817 Srl protein_coding Interval_87016 chr19 45559888 45560994 + 0 NA promoter-TSS (ENSMUSG00000025218.6) protein_coding-promoter-TSS (ENSMUSG00000025218.6) 90 ENSMUSG00000025218.6 ENSMUSG00000025218 ENSMUST00000026239 Poll protein_coding Interval_149607 chr7 100009600 100010093 + 0 NA promoter-TSS (ENSMUSG00000030732.13) protein_coding-promoter-TSS (ENSMUSG00000030732.13) 3674 ENSMUSG00000030732.13 ENSMUSG00000030732 ENSMUST00000144808 Chrdl2 protein_coding Interval_169644 chr9 99671266 99671815 + 0 NA Intergenic Intergenic 21324 ENSMUSG00000037784.14 ENSMUSG00000037784 ENSMUST00000190893 Dzip1l protein_coding Interval_61205 chr15 79952053 79952476 + 0 NA intron (ENSMUSG00000053411.16, intron 1 of 5) protein_coding-intron (ENSMUSG00000053411.16, intron 1 of 5) -18434 ENSMUSG00000053411.16 ENSMUSG00000053411 ENSMUST00000177061 Cbx7 protein_coding Interval_139108 chr6 95223664 95224300 + 0 NA Intergenic Intergenic 16596 ENSMUSG00000107934.1 ENSMUSG00000107934 ENSMUST00000204307 Gm17822 processed_pseudogene Interval_73660 chr17 42510472 42510838 + 0 NA Intergenic Intergenic 100740 ENSMUSG00000043972.8 ENSMUSG00000043972 ENSMUST00000068355 Opn5 protein_coding Interval_126988 chr5 99216659 99217149 + 0 NA TTS (ENSMUSG00000089809.9) protein_coding-TTS (ENSMUSG00000089809.9) -45483 ENSMUSG00000105579.2 ENSMUSG00000105579 ENSMUST00000198339 Gm43251 lincRNA Interval_154593 chr8 21873948 21874221 + 0 NA Intergenic Intergenic 11337 ENSMUSG00000047390.6 ENSMUSG00000047390 ENSMUST00000057076 Defb9 protein_coding Interval_122896 chr5 27028327 27030173 + 0 NA intron (ENSMUSG00000061576.15, intron 1 of 25) protein_coding-intron (ENSMUSG00000061576.15, intron 1 of 25) -20143 ENSMUSG00000061576.15 ENSMUSG00000061576 ENSMUST00000134175 Dpp6 protein_coding Interval_143944 chr7 18324872 18325206 + 0 NA intron (ENSMUSG00000108374.1, intron 2 of 3) unprocessed_pseudogene-intron (ENSMUSG00000108374.1, intron 2 of 3) 2157 ENSMUSG00000108374.1 ENSMUSG00000108374 ENSMUST00000206790 Gm33626 unprocessed_pseudogene Interval_53724 chr14 61191939 61192711 + 0 NA exon (ENSMUSG00000048279.19, exon 8 of 10) protein_coding-exon (ENSMUSG00000048279.19, exon 8 of 10) -1148 ENSMUSG00000048279.19 ENSMUSG00000048279 ENSMUST00000229692 Sacs protein_coding Interval_82876 chr18 78138119 78138636 + 0 NA intron (ENSMUSG00000059336.14, intron 1 of 8) protein_coding-intron (ENSMUSG00000059336.14, intron 1 of 8) 3742 ENSMUSG00000059336.14 ENSMUSG00000059336 ENSMUST00000160639 Slc14a1 protein_coding Interval_145810 chr7 39494614 39495253 + 0 NA intron (ENSMUSG00000100490.1, intron 2 of 2) unprocessed_pseudogene-intron (ENSMUSG00000100490.1, intron 2 of 2) 5495 ENSMUSG00000100490.1 ENSMUSG00000100490 ENSMUST00000189105 Gm28455 unprocessed_pseudogene Interval_68420 chr16 76321106 76322345 + 0 NA intron (ENSMUSG00000048490.14, intron 2 of 2) protein_coding-intron (ENSMUSG00000048490.14, intron 3 of 3) 52101 ENSMUSG00000048490.14 ENSMUSG00000048490 ENSMUST00000145649 Nrip1 protein_coding Interval_109636 chr3 145612826 145615051 + 0 NA Intergenic Intergenic 36043 ENSMUSG00000028195.4 ENSMUSG00000028195 ENSMUST00000029846 Ccn1 protein_coding Interval_68264 chr16 71555936 71556591 + 0 NA Intergenic Intergenic -107525 ENSMUSG00000065924.1 ENSMUSG00000065924 ENSMUST00000083990 Gm22797 snoRNA Interval_70273 chr17 7906177 7906692 + 0 NA intron (ENSMUSG00000090069.2, intron 1 of 2) antisense-intron (ENSMUSG00000090069.2, intron 1 of 2) -20501 ENSMUSG00000033450.8 ENSMUSG00000033450 ENSMUST00000226153 Tagap protein_coding Interval_12441 chr1 193496471 193497625 + 0 NA Intergenic Intergenic 3461 ENSMUSG00000102981.1 ENSMUSG00000102981 ENSMUST00000194074 Gm38322 TEC Interval_49940 chr13 118565682 118566636 + 0 NA intron (ENSMUSG00000100727.6, intron 2 of 3) lincRNA-intron (ENSMUSG00000100727.6, intron 2 of 3) 3623 ENSMUSG00000114365.1 ENSMUSG00000114365 ENSMUST00000223971 Gm9098 processed_pseudogene Interval_87690 chr19 55062666 55063965 + 0 NA Intergenic Intergenic -36187 ENSMUSG00000118099.1 ENSMUSG00000118099 ENSMUST00000237370 Gm31356 antisense Interval_165369 chr9 46745728 46745919 + 0 NA Intergenic Intergenic -31665 ENSMUSG00000111783.1 ENSMUSG00000111783 ENSMUST00000216630 Gm8863 processed_pseudogene Interval_87012 chr19 45544689 45545454 + 0 NA Intergenic Intergenic 15460 ENSMUSG00000025218.6 ENSMUSG00000025218 ENSMUST00000026239 Poll protein_coding Interval_85643 chr19 29277208 29277565 + 0 NA intron (ENSMUSG00000024789.13, intron 5 of 23) protein_coding-intron (ENSMUSG00000024789.13, intron 5 of 23) 24945 ENSMUSG00000024789.13 ENSMUSG00000024789 ENSMUST00000238009 Jak2 protein_coding Interval_30709 chr11 96039485 96040174 + 0 NA TTS (ENSMUSG00000006058.10) protein_coding-TTS (ENSMUSG00000006058.10) 4873 ENSMUSG00000006058.10 ENSMUSG00000006058 ENSMUST00000156394 Snf8 protein_coding Interval_168936 chr9 89194586 89195318 + 0 NA Intergenic Intergenic -4257 ENSMUSG00000089929.1 ENSMUSG00000089929 ENSMUST00000068569 Bcl2a1b protein_coding Interval_95314 chr2 106373028 106373387 + 0 NA intron (ENSMUSG00000074981.13, intron 15 of 18) transcribed_unitary_pseudogene-intron (ENSMUSG00000074981.13, intron 30 of 35) 107900 ENSMUSG00000081258.1 ENSMUSG00000081258 ENSMUST00000119006 Gm14013 processed_pseudogene Interval_27444 chr11 67819352 67820750 + 0 NA Intergenic Intergenic 21764 ENSMUSG00000033044.12 ENSMUSG00000033044 ENSMUST00000168612 Dhrs7c protein_coding Interval_155651 chr8 35670867 35671381 + 0 NA intron (ENSMUSG00000070056.6, intron 2 of 2) protein_coding-intron (ENSMUSG00000070056.6, intron 2 of 2) 48825 ENSMUSG00000110335.1 ENSMUSG00000110335 ENSMUST00000209585 1700015I17Rik lincRNA Interval_124777 chr5 53917586 53917774 + 0 NA promoter-TSS (ENSMUSG00000107173.1) TEC-promoter-TSS (ENSMUSG00000107173.1) -764 ENSMUSG00000107173.1 ENSMUSG00000107173 ENSMUST00000201049 Gm43266 TEC Interval_110092 chr3 153242480 153243372 + 0 NA intron (ENSMUSG00000052544.9, intron 3 of 4) protein_coding-intron (ENSMUSG00000052544.9, intron 2 of 2) 55723 ENSMUSG00000105023.1 ENSMUSG00000105023 ENSMUST00000197231 1700012D16Rik sense_intronic Interval_155472 chr8 33803117 33803632 + 0 NA TTS (ENSMUSG00000031586.17) protein_coding-TTS (ENSMUSG00000031586.17) -9829 ENSMUSG00000097442.1 ENSMUSG00000097442 ENSMUST00000181120 Gm26632 antisense Interval_78474 chr18 13376830 13377082 + 0 NA Intergenic Intergenic 4867 ENSMUSG00000117367.1 ENSMUSG00000117367 ENSMUST00000235001 Gm50093 processed_pseudogene Interval_12853 chr10 6652920 6653240 + 0 NA Intergenic Intergenic 108681 ENSMUSG00000078488.1 ENSMUSG00000078488 ENSMUST00000105596 Gm10945 protein_coding Interval_97624 chr2 140863827 140864180 + 0 NA intron (ENSMUSG00000068205.14, intron 4 of 16) protein_coding-intron (ENSMUSG00000068205.14, intron 4 of 17) 92246 ENSMUSG00000081731.1 ENSMUSG00000081731 ENSMUST00000121776 Calr-ps processed_pseudogene Interval_22770 chr11 15185771 15186240 + 0 NA Intergenic Intergenic 136847 ENSMUSG00000084183.1 ENSMUSG00000084183 ENSMUST00000121361 Gm12009 processed_pseudogene Interval_36346 chr12 41696954 41697362 + 0 NA intron (ENSMUSG00000056899.10, intron 4 of 5) protein_coding-intron (ENSMUSG00000056899.10, intron 5 of 6) 12764 ENSMUSG00000113438.1 ENSMUSG00000113438 ENSMUST00000221651 Gm47369 processed_pseudogene Interval_30906 chr11 97168219 97169191 + 0 NA intron (ENSMUSG00000001440.5, intron 14 of 21) protein_coding-intron (ENSMUSG00000001440.5, intron 14 of 21) -3305 ENSMUSG00000001440.5 ENSMUSG00000001440 ENSMUST00000153727 Kpnb1 protein_coding Interval_14362 chr10 31518759 31520225 + 0 NA intron (ENSMUSG00000063760.9, intron 2 of 5) protein_coding-intron (ENSMUSG00000063760.9, intron 2 of 5) 37948 ENSMUSG00000112338.1 ENSMUSG00000112338 ENSMUST00000219494 Gm47693 TEC Interval_136872 chr6 62075060 62076586 + 0 NA intron (ENSMUSG00000039578.17, intron 10 of 10) protein_coding-intron (ENSMUSG00000039578.17, intron 9 of 9) 100725 ENSMUSG00000108246.1 ENSMUSG00000108246 ENSMUST00000203440 Gm43896 TEC Interval_75999 chr17 74275947 74276444 + 0 NA intron (ENSMUSG00000058704.9, intron 1 of 8) protein_coding-intron (ENSMUSG00000058704.9, intron 1 of 8) 18668 ENSMUSG00000058704.9 ENSMUSG00000058704 ENSMUST00000232861 Memo1 protein_coding Interval_79544 chr18 33411949 33413295 + 0 NA Intergenic Intergenic -27667 ENSMUSG00000117730.1 ENSMUSG00000117730 ENSMUST00000237135 Gm5503 processed_pseudogene Interval_127957 chr5 109841491 109845328 + 0 NA Intergenic Intergenic -9264 ENSMUSG00000105044.1 ENSMUSG00000105044 ENSMUST00000197379 Gm10416 TEC Interval_12247 chr1 191097124 191099213 + 0 NA promoter-TSS (ENSMUSG00000026630.9) protein_coding-promoter-TSS (ENSMUSG00000026630.9) 321 ENSMUSG00000026630.9 ENSMUSG00000026630 ENSMUST00000191621 Batf3 protein_coding Interval_153863 chr8 10153511 10154793 + 0 NA exon (ENSMUSG00000039057.11, exon 1 of 35) protein_coding-exon (ENSMUSG00000039057.11, exon 1 of 35) 89098 ENSMUSG00000109545.1 ENSMUSG00000109545 ENSMUST00000207605 Gm44788 lincRNA Interval_115433 chr4 98888415 98889676 + 0 NA Intergenic Intergenic 33431 ENSMUSG00000084188.1 ENSMUSG00000084188 ENSMUST00000117920 Gm12851 processed_pseudogene Interval_125248 chr5 65662814 65663235 + 0 NA intron (ENSMUSG00000029202.12, intron 5 of 32) protein_coding-intron (ENSMUSG00000029202.12, intron 5 of 31) 2218 ENSMUSG00000088494.1 ENSMUSG00000088494 ENSMUST00000157869 Gm24399 snRNA Interval_39623 chr12 91640675 91642185 + 0 NA TTS (ENSMUSG00000020961.15) protein_coding-TTS (ENSMUSG00000020961.15) -23753 ENSMUSG00000113943.1 ENSMUSG00000113943 ENSMUST00000222304 Gm47804 lincRNA Interval_46992 chr13 74008822 74010456 + 0 NA promoter-TSS (ENSMUSG00000085881.2) processed_transcript-promoter-TSS (ENSMUSG00000085881.2) 232 ENSMUSG00000021573.15 ENSMUSG00000021573 ENSMUST00000022057 Tppp protein_coding Interval_42839 chr13 20182628 20185649 + 0 NA intron (ENSMUSG00000041112.17, intron 1 of 13) protein_coding-intron (ENSMUSG00000041112.17, intron 1 of 21) -87767 ENSMUSG00000113649.1 ENSMUSG00000113649 ENSMUST00000222367 Gm47665 TEC Interval_86310 chr19 38574079 38574744 + 0 NA intron (ENSMUSG00000024998.17, intron 2 of 32) protein_coding-intron (ENSMUSG00000024998.17, intron 1 of 31) -101209 ENSMUSG00000088940.1 ENSMUSG00000088940 ENSMUST00000158315 Gm24930 misc_RNA Interval_103261 chr3 37611429 37612055 + 0 NA Intergenic Intergenic -2171 ENSMUSG00000085677.7 ENSMUSG00000085677 ENSMUST00000129750 4930594O21Rik lincRNA Interval_68292 chr16 72670383 72671085 + 0 NA intron (ENSMUSG00000022883.11, intron 1 of 1) protein_coding-intron (ENSMUSG00000022883.11, intron 1 of 28) -298293 ENSMUSG00000116910.1 ENSMUSG00000116910 ENSMUST00000232381 Gm49670 processed_pseudogene Interval_125769 chr5 74021823 74022428 + 0 NA intron (ENSMUSG00000054814.14, intron 3 of 7) protein_coding-intron (ENSMUSG00000054814.14, intron 4 of 8) 7243 ENSMUSG00000054814.14 ENSMUSG00000054814 ENSMUST00000145016 Usp46 protein_coding Interval_168282 chr9 78410174 78410578 + 0 NA intron (ENSMUSG00000070291.4, intron 5 of 16) protein_coding-intron (ENSMUSG00000070291.4, intron 5 of 16) -14218 ENSMUSG00000090724.1 ENSMUSG00000090724 ENSMUST00000171096 4930542C12Rik antisense Interval_126580 chr5 90375408 90375987 + 0 NA Intergenic Intergenic 9077 ENSMUSG00000054945.4 ENSMUSG00000054945 ENSMUST00000068250 Gm9958 bidirectional_promoter_lncRNA Interval_54190 chr14 66101208 66102062 + 0 NA exon (ENSMUSG00000022040.8, exon 8 of 19) protein_coding-exon (ENSMUSG00000022040.8, exon 8 of 19) 9025 ENSMUSG00000022040.8 ENSMUSG00000022040 ENSMUST00000070515 Ephx2 protein_coding Interval_61289 chr15 80598947 80599695 + 0 NA intron (ENSMUSG00000042351.9, intron 1 of 7) protein_coding-intron (ENSMUSG00000042351.9, intron 1 of 7) -24201 ENSMUSG00000042351.9 ENSMUSG00000042351 ENSMUST00000230910 Grap2 protein_coding Interval_33707 chr11 118007459 118009095 + 0 NA intron (ENSMUSG00000017715.11, intron 5 of 7) protein_coding-intron (ENSMUSG00000017715.11, intron 7 of 9) -4066 ENSMUSG00000017715.11 ENSMUSG00000017715 ENSMUST00000155507 Pgs1 protein_coding Interval_121094 chr4 152913423 152913946 + 0 NA Intergenic Intergenic 99900 ENSMUSG00000080360.1 ENSMUSG00000080360 ENSMUST00000116710 Gm25779 miRNA Interval_41026 chr12 110679633 110679885 + 0 NA intron (ENSMUSG00000056508.6, intron 1 of 4) protein_coding-intron (ENSMUSG00000056508.6, intron 1 of 5) 2853 ENSMUSG00000056508.6 ENSMUSG00000056508 ENSMUST00000222915 1700001K19Rik protein_coding Interval_164291 chr9 35043588 35045865 + 0 NA Intergenic Intergenic 27905 ENSMUSG00000032038.7 ENSMUSG00000032038 ENSMUST00000215463 St3gal4 protein_coding Interval_22151 chr11 6646754 6648394 + 0 NA Intergenic Intergenic -10108 ENSMUSG00000000381.10 ENSMUSG00000000381 ENSMUST00000127341 Wap protein_coding Interval_93262 chr2 71542783 71543240 + 0 NA TTS (ENSMUSG00000023391.8) protein_coding-TTS (ENSMUSG00000023391.8) 2939 ENSMUSG00000023391.8 ENSMUSG00000023391 ENSMUST00000134249 Dlx2 protein_coding Interval_125905 chr5 75597390 75598804 + 0 NA intron (ENSMUSG00000005672.12, intron 1 of 20) protein_coding-intron (ENSMUSG00000005672.12, intron 1 of 20) -36947 ENSMUSG00000089078.1 ENSMUSG00000089078 ENSMUST00000158453 Gm24502 snRNA Interval_63188 chr15 99631361 99632650 + 0 NA TTS (ENSMUSG00000023015.14) protein_coding-TTS (ENSMUSG00000023015.14) 19607 ENSMUSG00000023015.14 ENSMUSG00000023015 ENSMUST00000109581 Racgap1 protein_coding Interval_165848 chr9 53794558 53795607 + 0 NA intron (ENSMUSG00000042195.9, intron 1 of 7) protein_coding-intron (ENSMUSG00000042195.9, intron 1 of 7) -15635 ENSMUSG00000042195.9 ENSMUSG00000042195 ENSMUST00000216515 Slc35f2 protein_coding Interval_89970 chr2 26932766 26934226 + 0 NA promoter-TSS (ENSMUSG00000049897.14) protein_coding-promoter-TSS (ENSMUSG00000049897.14) 285 ENSMUSG00000014867.9 ENSMUSG00000014867 ENSMUST00000154651 Surf4 protein_coding Interval_127844 chr5 108177446 108177838 + 0 NA intron (ENSMUSG00000056531.11, intron 14 of 28) protein_coding-intron (ENSMUSG00000056531.11, intron 14 of 28) -22812 ENSMUSG00000105188.1 ENSMUSG00000105188 ENSMUST00000199603 Gm8190 processed_pseudogene Interval_119170 chr4 135960717 135960975 + 0 NA TTS (ENSMUSG00000028672.13) protein_coding-TTS (ENSMUSG00000028672.13) -4349 ENSMUSG00000028671.16 ENSMUSG00000028671 ENSMUST00000150430 Gale protein_coding Interval_141869 chr6 135024718 135026745 + 0 NA Intergenic Intergenic 14107 ENSMUSG00000030204.10 ENSMUSG00000030204 ENSMUST00000155022 Ddx47 protein_coding Interval_115263 chr4 94978449 94979738 + 0 NA promoter-TSS (ENSMUSG00000062627.9) protein_coding-promoter-TSS (ENSMUSG00000062627.9) -110 ENSMUSG00000086251.1 ENSMUSG00000086251 ENSMUST00000149367 Gm12694 antisense Interval_159122 chr8 90839919 90840587 + 0 NA intron (ENSMUSG00000056608.14, intron 1 of 2) protein_coding-intron (ENSMUSG00000056608.14, intron 1 of 39) -9414 ENSMUSG00000056608.14 ENSMUSG00000056608 ENSMUST00000211552 Chd9 protein_coding Interval_51787 chr14 32195235 32196173 + 0 NA intron (ENSMUSG00000013701.13, intron 2 of 6) protein_coding-intron (ENSMUSG00000013701.13, intron 2 of 6) -3654 ENSMUSG00000077611.1 ENSMUSG00000077611 ENSMUST00000104423 Gm23946 snoRNA Interval_46529 chr13 66867637 66869463 + 0 NA Intergenic Intergenic 4026 ENSMUSG00000071294.2 ENSMUSG00000071294 ENSMUST00000091531 Cbx3-ps4 processed_pseudogene Interval_161441 chr8 120473457 120474364 + 0 NA intron (ENSMUSG00000031822.20, intron 2 of 2) protein_coding-intron (ENSMUSG00000092329.1, intron 1 of 15) -30361 ENSMUSG00000080549.2 ENSMUSG00000080549 ENSMUST00000116899 Gm22715 miRNA Interval_58036 chr15 26953560 26954730 + 0 NA Intergenic Intergenic -58627 ENSMUSG00000043556.10 ENSMUSG00000043556 ENSMUST00000226377 Fbxl7 protein_coding Interval_38539 chr12 79975855 79976587 + 0 NA Intergenic Intergenic 3630 ENSMUSG00000112292.1 ENSMUSG00000112292 ENSMUST00000219732 Gm8275 processed_pseudogene Interval_58176 chr15 30341313 30341849 + 0 NA intron (ENSMUSG00000022240.10, intron 2 of 2) protein_coding-intron (ENSMUSG00000022240.10, intron 2 of 22) -87263 ENSMUSG00000115073.1 ENSMUSG00000115073 ENSMUST00000226263 Gm49283 TEC Interval_73635 chr17 42024486 42024885 + 0 NA Intergenic Intergenic -291304 ENSMUSG00000042256.5 ENSMUSG00000042256 ENSMUST00000232968 Ptchd4 protein_coding Interval_148689 chr7 84164072 84164406 + 0 NA intron (ENSMUSG00000097016.2, intron 2 of 4) bidirectional_promoter_lncRNA-intron (ENSMUSG00000097016.2, intron 2 of 3) -6326 ENSMUSG00000092743.1 ENSMUSG00000092743 ENSMUST00000175002 Gm22177 snRNA Interval_9540 chr1 159021694 159022885 + 0 NA Intergenic Intergenic -42218 ENSMUSG00000047661.9 ENSMUSG00000047661 ENSMUST00000162474 1600012P17Rik lincRNA Interval_123271 chr5 31030164 31032461 + 0 NA Intergenic Intergenic 11293 ENSMUSG00000006641.12 ENSMUSG00000006641 ENSMUST00000200816 Slc5a6 protein_coding Interval_172756 chrX 48340879 48342345 + 0 NA promoter-TSS (ENSMUSG00000036959.15) protein_coding-promoter-TSS (ENSMUSG00000036959.15) -449 ENSMUSG00000036959.15 ENSMUSG00000036959 ENSMUST00000142160 Bcorl1 protein_coding Interval_119758 chr4 139740189 139740648 + 0 NA TTS (ENSMUSG00000028736.13) protein_coding-TTS (ENSMUSG00000028736.13) 86869 ENSMUSG00000028738.14 ENSMUSG00000028738 ENSMUST00000166773 Tas1r2 protein_coding Interval_148649 chr7 83827774 83829142 + 0 NA intron (ENSMUSG00000109450.1, intron 2 of 3) lincRNA-intron (ENSMUSG00000109450.1, intron 2 of 3) 6141 ENSMUSG00000109248.1 ENSMUSG00000109248 ENSMUST00000208435 Gm44993 lincRNA Interval_92052 chr2 52891300 52891517 + 0 NA intron (ENSMUSG00000036053.17, intron 1 of 26) protein_coding-intron (ENSMUSG00000036053.17, intron 1 of 26) 33548 ENSMUSG00000036053.17 ENSMUSG00000036053 ENSMUST00000050719 Fmnl2 protein_coding Interval_80255 chr18 38572342 38574488 + 0 NA Intergenic Intergenic -9435 ENSMUSG00000118296.1 ENSMUSG00000118296 ENSMUST00000236625 Gm19100 processed_pseudogene Interval_145314 chr7 32288830 32289337 + 0 NA Intergenic Intergenic 38162 ENSMUSG00000097982.1 ENSMUSG00000097982 ENSMUST00000183195 Scgb2b12 protein_coding Interval_107809 chr3 115660801 115661592 + 0 NA Intergenic Intergenic 53876 ENSMUSG00000045092.8 ENSMUSG00000045092 ENSMUST00000055676 S1pr1 protein_coding Interval_17979 chr10 81210165 81210462 + 0 NA exon (ENSMUSG00000085779.1, exon 2 of 2) antisense-exon (ENSMUSG00000085779.1, exon 2 of 2) -8262 ENSMUSG00000004939.7 ENSMUSG00000004939 ENSMUST00000005069 Nmrk2 protein_coding Interval_128959 chr5 116319068 116319845 + 0 NA Intergenic Intergenic 7096 ENSMUSG00000086715.1 ENSMUSG00000086715 ENSMUST00000128473 B230112J18Rik lincRNA Interval_65686 chr16 25349550 25350713 + 0 NA intron (ENSMUSG00000048399.4, intron 3 of 5) protein_coding-intron (ENSMUSG00000048399.4, intron 3 of 5) 63310 ENSMUSG00000048399.4 ENSMUSG00000048399 ENSMUST00000128595 Tprg protein_coding Interval_18066 chr10 82022202 82022403 + 0 NA TTS (ENSMUSG00000112381.1) processed_pseudogene-TTS (ENSMUSG00000112381.1) 1751 ENSMUSG00000112381.1 ENSMUSG00000112381 ENSMUST00000218581 Gm8170 processed_pseudogene Interval_16719 chr10 67192510 67193843 + 0 NA intron (ENSMUSG00000037876.17, intron 3 of 25) protein_coding-intron (ENSMUSG00000037876.17, intron 3 of 25) 7428 ENSMUSG00000037876.17 ENSMUSG00000037876 ENSMUST00000173236 Jmjd1c protein_coding Interval_137795 chr6 82584689 82584905 + 0 NA Intergenic Intergenic -95335 ENSMUSG00000107453.1 ENSMUSG00000107453 ENSMUST00000203711 Gm44145 antisense Interval_21019 chr10 123357237 123357428 + 0 NA intron (ENSMUSG00000044071.9, intron 1 of 4) protein_coding-intron (ENSMUSG00000044071.9, intron 1 of 5) -75234 ENSMUSG00000084461.1 ENSMUSG00000084461 ENSMUST00000122512 Gm22958 snRNA Interval_123163 chr5 30210917 30211125 + 0 NA Intergenic Intergenic -6434 ENSMUSG00000067642.11 ENSMUSG00000067642 ENSMUST00000135322 Adgrf3 protein_coding Interval_2860 chr1 46863433 46863912 + 0 NA intron (ENSMUSG00000025986.6, intron 1 of 1) protein_coding-intron (ENSMUSG00000025986.6, intron 1 of 1) -13193 ENSMUSG00000100213.1 ENSMUSG00000100213 ENSMUST00000189404 Gm28151 lincRNA Interval_18372 chr10 85362913 85363183 + 0 NA Intergenic Intergenic 29147 ENSMUSG00000087895.1 ENSMUSG00000087895 ENSMUST00000157270 Gm25281 miRNA Interval_127561 chr5 105301842 105302173 + 0 NA Intergenic Intergenic -8312 ENSMUSG00000079362.5 ENSMUSG00000079362 ENSMUST00000050011 Gm43302 protein_coding Interval_87290 chr19 47412718 47413659 + 0 NA intron (ENSMUSG00000053617.12, intron 2 of 13) protein_coding-intron (ENSMUSG00000053617.12, intron 2 of 14) -2829 ENSMUSG00000053617.12 ENSMUSG00000053617 ENSMUST00000237828 Sh3pxd2a protein_coding Interval_98863 chr2 155628585 155630544 + 0 NA exon (ENSMUSG00000074652.3, exon 29 of 42) protein_coding-exon (ENSMUSG00000074652.3, exon 29 of 42) -3887 ENSMUSG00000074652.3 ENSMUSG00000074652 ENSMUST00000154656 Myh7b protein_coding Interval_31710 chr11 102372974 102374289 + 0 NA Intergenic Intergenic 3389 ENSMUSG00000087330.1 ENSMUSG00000087330 ENSMUST00000126237 Bloodlinc lincRNA Interval_76873 chr17 84656292 84657131 + 0 NA Intergenic Intergenic 7436 ENSMUSG00000024253.9 ENSMUSG00000024253 ENSMUST00000234861 Dync2li1 protein_coding Interval_37028 chr12 56571784 56571992 + 0 NA intron (ENSMUSG00000098172.7, intron 2 of 2) antisense-intron (ENSMUSG00000098172.7, intron 2 of 2) -19181 ENSMUSG00000092515.8 ENSMUSG00000092515 ENSMUST00000182261 C87198 lincRNA Interval_144939 chr7 29018741 29020269 + 0 NA exon (ENSMUSG00000030592.18, exon 91 of 106) protein_coding-exon (ENSMUSG00000030592.18, exon 91 of 106) -9518 ENSMUSG00000109017.1 ENSMUSG00000109017 ENSMUST00000207099 Gm38979 antisense Interval_42756 chr13 19107504 19107711 + 0 NA intron (ENSMUSG00000021314.13, intron 11 of 20) protein_coding-intron (ENSMUSG00000021314.13, intron 11 of 20) -36032 ENSMUSG00000113378.1 ENSMUSG00000113378 ENSMUST00000220695 Gm47660 processed_pseudogene Interval_136930 chr6 64673554 64673774 + 0 NA intron (ENSMUSG00000071424.10, intron 1 of 1) protein_coding-intron (ENSMUSG00000071424.10, intron 1 of 1) 10476 ENSMUSG00000071424.10 ENSMUSG00000071424 ENSMUST00000210324 Grid2 protein_coding Interval_30711 chr11 96049806 96050377 + 0 NA exon (ENSMUSG00000014349.7, exon 7 of 7) protein_coding-exon (ENSMUSG00000014349.7, exon 7 of 7) 15135 ENSMUSG00000006058.10 ENSMUSG00000006058 ENSMUST00000156394 Snf8 protein_coding Interval_162378 chr8 127579198 127579801 + 0 NA promoter-TSS (ENSMUSG00000025812.18) protein_coding-promoter-TSS (ENSMUSG00000025812.18) 18064 ENSMUSG00000090074.1 ENSMUSG00000090074 ENSMUST00000161478 Gm6921 processed_pseudogene Interval_51671 chr14 31250744 31252183 + 0 NA promoter-TSS (ENSMUSG00000021901.10) protein_coding-promoter-TSS (ENSMUSG00000021901.10) -75 ENSMUSG00000021901.10 ENSMUSG00000021901 ENSMUST00000185700 Bap1 protein_coding Interval_30493 chr11 94732457 94733334 + 0 NA Intergenic Intergenic -8887 ENSMUSG00000020870.7 ENSMUSG00000020870 ENSMUST00000188741 Cdc34b protein_coding Interval_152315 chr7 131678648 131678907 + 0 NA intron (ENSMUSG00000030849.18, intron 2 of 6) protein_coding-intron (ENSMUSG00000030849.18, intron 2 of 6) -3895 ENSMUSG00000109066.1 ENSMUSG00000109066 ENSMUST00000207218 Gm4585 processed_pseudogene Interval_4601 chr1 75374472 75375928 + 0 NA promoter-TSS (ENSMUSG00000026207.16) protein_coding-promoter-TSS (ENSMUSG00000026207.16) -188 ENSMUSG00000085653.7 ENSMUSG00000085653 ENSMUST00000130095 Gm15179 antisense Interval_156219 chr8 46197351 46197833 + 0 NA Intergenic Intergenic 13438 ENSMUSG00000031633.4 ENSMUSG00000031633 ENSMUST00000155986 Slc25a4 protein_coding Interval_156214 chr8 46151372 46152863 + 0 NA promoter-TSS (ENSMUSG00000038291.16) protein_coding-promoter-TSS (ENSMUSG00000038291.16) -493 ENSMUSG00000086279.1 ENSMUSG00000086279 ENSMUST00000147206 Gm15634 sense_intronic Interval_156616 chr8 54730693 54730964 + 0 NA intron (ENSMUSG00000039375.16, intron 3 of 4) protein_coding-intron (ENSMUSG00000039375.16, intron 3 of 4) 21793 ENSMUSG00000089719.1 ENSMUSG00000089719 ENSMUST00000162822 Gm15758 processed_transcript Interval_87514 chr19 53175210 53176029 + 0 NA intron (ENSMUSG00000025026.15, intron 2 of 2) protein_coding-intron (ENSMUSG00000025026.15, intron 1 of 15) -15756 ENSMUSG00000088855.1 ENSMUSG00000088855 ENSMUST00000158230 Gm24724 snRNA Interval_74032 chr17 46172514 46172910 + 0 NA exon (ENSMUSG00000023953.9, exon 11 of 11) protein_coding-exon (ENSMUSG00000023953.9, exon 11 of 11) 11646 ENSMUSG00000023952.13 ENSMUSG00000023952 ENSMUST00000166663 Gtpbp2 protein_coding Interval_143868 chr7 16853014 16853651 + 0 NA exon (ENSMUSG00000041187.16, exon 8 of 18) protein_coding-exon (ENSMUSG00000041187.16, exon 8 of 18) -10015 ENSMUSG00000041187.16 ENSMUSG00000041187 ENSMUST00000205798 Prkd2 protein_coding Interval_105645 chr3 88324703 88326052 + 0 NA promoter-TSS (ENSMUSG00000001418.13) protein_coding-promoter-TSS (ENSMUSG00000001418.13) 322 ENSMUSG00000001418.13 ENSMUSG00000001418 ENSMUST00000154381 Glmp protein_coding Interval_10576 chr1 171974962 171975564 + 0 NA Intergenic Intergenic 51448 ENSMUSG00000026556.15 ENSMUSG00000026556 ENSMUST00000138714 Vangl2 protein_coding Interval_119849 chr4 140490996 140492265 + 0 NA Intergenic Intergenic -45466 ENSMUSG00000118416.1 ENSMUSG00000118416 ENSMUST00000238366 Gm50453 unitary_pseudogene Interval_140912 chr6 122719761 122720519 + 0 NA Intergenic Intergenic 12651 ENSMUSG00000012396.12 ENSMUSG00000012396 ENSMUST00000012540 Nanog protein_coding Interval_112138 chr4 34902594 34903603 + 0 NA intron (ENSMUSG00000028298.10, intron 2 of 4) protein_coding-intron (ENSMUSG00000028298.10, intron 1 of 3) 8383 ENSMUSG00000085824.7 ENSMUSG00000085824 ENSMUST00000125820 Platr9 processed_transcript Interval_16204 chr10 61415389 61419010 + 0 NA promoter-TSS (ENSMUSG00000037171.6) protein_coding-promoter-TSS (ENSMUSG00000037171.6) -773 ENSMUSG00000037171.6 ENSMUSG00000037171 ENSMUST00000049339 Nodal protein_coding Interval_130192 chr5 124839446 124839756 + 0 NA intron (ENSMUSG00000037979.13, intron 2 of 3) protein_coding-intron (ENSMUSG00000037979.13, intron 2 of 3) 11982 ENSMUSG00000037979.13 ENSMUSG00000037979 ENSMUST00000143268 Ccdc92 protein_coding Interval_6697 chr1 118852470 118852685 + 0 NA intron (ENSMUSG00000048402.14, intron 5 of 5) protein_coding-intron (ENSMUSG00000048402.14, intron 8 of 13) 42441 ENSMUSG00000100040.1 ENSMUSG00000100040 ENSMUST00000190981 Gm28467 processed_pseudogene Interval_92096 chr2 53165434 53165678 + 0 NA intron (ENSMUSG00000061136.16, intron 5 of 25) protein_coding-intron (ENSMUSG00000061136.16, intron 5 of 25) 25631 ENSMUSG00000061136.16 ENSMUSG00000061136 ENSMUST00000132031 Prpf40a protein_coding Interval_171549 chr9 119137633 119138307 + 0 NA intron (ENSMUSG00000038060.15, intron 24 of 36) protein_coding-intron (ENSMUSG00000038060.15, intron 18 of 26) 12093 ENSMUSG00000010651.4 ENSMUSG00000010651 ENSMUST00000127952 Acaa1b protein_coding Interval_1830 chr1 34056562 34056883 + 0 NA intron (ENSMUSG00000026131.20, intron 1 of 97) protein_coding-intron (ENSMUSG00000026131.20, intron 1 of 97) -20505 ENSMUSG00000026131.20 ENSMUSG00000026131 ENSMUST00000182507 Dst protein_coding Interval_105508 chr3 87144457 87145168 + 0 NA intron (ENSMUSG00000041734.15, intron 1 of 15) protein_coding-intron (ENSMUSG00000041734.15, intron 1 of 13) -12881 ENSMUSG00000102893.1 ENSMUSG00000102893 ENSMUST00000192571 Gm37855 lincRNA Interval_112903 chr4 45909777 45910167 + 0 NA TTS (ENSMUSG00000035539.14) protein_coding-TTS (ENSMUSG00000035539.14) 19669 ENSMUSG00000035539.14 ENSMUSG00000035539 ENSMUST00000151024 Ccdc180 protein_coding Interval_117816 chr4 126386392 126386638 + 0 NA intron (ENSMUSG00000028842.15, intron 2 of 3) protein_coding-intron (ENSMUSG00000028842.15, intron 5 of 18) 17820 ENSMUSG00000028842.15 ENSMUSG00000028842 ENSMUST00000123233 Ago3 protein_coding Interval_85674 chr19 29562867 29563996 + 0 NA exon (ENSMUSG00000038658.15, exon 4 of 4) protein_coding-exon (ENSMUSG00000038658.15, exon 4 of 4) 30195 ENSMUSG00000038658.15 ENSMUSG00000038658 ENSMUST00000161330 Ric1 protein_coding Interval_28011 chr11 72175962 72177400 + 0 NA exon (ENSMUSG00000107877.2, exon 10 of 19) protein_coding-exon (ENSMUSG00000107877.2, exon 10 of 19) 30345 ENSMUSG00000107877.2 ENSMUSG00000107877 ENSMUST00000204457 Gm43951 protein_coding Interval_157837 chr8 74833680 74834398 + 0 NA promoter-TSS (ENSMUSG00000079011.9) lincRNA-promoter-TSS (ENSMUSG00000079011.9) -102 ENSMUSG00000079011.9 ENSMUSG00000079011 ENSMUST00000137218 Gm11033 lincRNA Interval_134232 chr6 23281696 23282060 + 0 NA intron (ENSMUSG00000017978.18, intron 28 of 29) protein_coding-intron (ENSMUSG00000017978.18, intron 28 of 29) 30745 ENSMUSG00000106775.1 ENSMUSG00000106775 ENSMUST00000202489 C130093G08Rik TEC Interval_145947 chr7 42574102 42574790 + 0 NA exon (ENSMUSG00000108446.1, exon 1 of 1) processed_transcript-exon (ENSMUSG00000108446.1, exon 1 of 1) 3789 ENSMUSG00000108446.1 ENSMUSG00000108446 ENSMUST00000205775 Gm44997 processed_transcript Interval_75502 chr17 67553245 67553476 + 0 NA Intergenic Intergenic 1753 ENSMUSG00000087829.1 ENSMUSG00000087829 ENSMUST00000157204 Gm22277 misc_RNA Interval_29340 chr11 83301532 83303870 + 0 NA promoter-TSS (ENSMUSG00000035152.14) protein_coding-promoter-TSS (ENSMUSG00000035152.14) 3677 ENSMUSG00000035152.14 ENSMUSG00000035152 ENSMUST00000176523 Ap2b1 protein_coding Interval_109099 chr3 135730973 135731801 + 0 NA Intergenic Intergenic -76821 ENSMUSG00000106149.1 ENSMUSG00000106149 ENSMUST00000196513 Gm43430 TEC Interval_99860 chr2 165361023 165361219 + 0 NA promoter-TSS (ENSMUSG00000056824.15) protein_coding-promoter-TSS (ENSMUSG00000056824.15) 7602 ENSMUSG00000056824.15 ENSMUSG00000056824 ENSMUST00000141140 Zfp663 protein_coding Interval_154934 chr8 25159029 25159744 + 0 NA promoter-TSS (ENSMUSG00000099142.1) miRNA-promoter-TSS (ENSMUSG00000099142.1) -153 ENSMUSG00000099142.1 ENSMUSG00000099142 ENSMUST00000184998 Mir8108 miRNA Interval_75620 chr17 69416843 69418030 + 0 NA promoter-TSS (ENSMUSG00000073374.3) lincRNA-promoter-TSS (ENSMUSG00000073374.3) 34 ENSMUSG00000073374.3 ENSMUSG00000073374 ENSMUST00000097289 C030034I22Rik lincRNA Interval_92761 chr2 65190887 65191754 + 0 NA intron (ENSMUSG00000034903.18, intron 1 of 3) protein_coding-intron (ENSMUSG00000034903.18, intron 1 of 12) -47436 ENSMUSG00000086881.1 ENSMUSG00000086881 ENSMUST00000137582 Gm13594 antisense Interval_61650 chr15 83164986 83165521 + 0 NA intron (ENSMUSG00000018042.18, intron 2 of 8) protein_coding-intron (ENSMUSG00000018042.18, intron 2 of 8) 4924 ENSMUSG00000018042.18 ENSMUSG00000018042 ENSMUST00000162178 Cyb5r3 protein_coding Interval_36034 chr12 33452043 33452772 + 0 NA TTS (ENSMUSG00000077750.1) snoRNA-TTS (ENSMUSG00000077750.1) 436 ENSMUSG00000077750.1 ENSMUSG00000077750 ENSMUST00000104562 Gm23529 snoRNA Interval_114478 chr4 80834165 80834484 + 0 NA promoter-TSS (ENSMUSG00000005994.14) protein_coding-promoter-TSS (ENSMUSG00000005994.14) -12264 ENSMUSG00000005994.14 ENSMUSG00000005994 ENSMUST00000133932 Tyrp1 protein_coding Interval_127917 chr5 109032550 109032834 + 0 NA Intergenic Intergenic -15777 ENSMUSG00000093545.1 ENSMUSG00000093545 ENSMUST00000176461 Gm5871 processed_pseudogene Interval_107168 chr3 104219316 104221115 + 0 NA promoter-TSS (ENSMUSG00000052539.15) protein_coding-promoter-TSS (ENSMUSG00000052539.15) 19105 ENSMUSG00000088479.1 ENSMUSG00000088479 ENSMUST00000157854 Gm23077 snoRNA Interval_33423 chr11 116472496 116472946 + 0 NA intron (ENSMUSG00000086826.1, intron 2 of 2) protein_coding-intron (ENSMUSG00000015869.16, intron 8 of 9) 6402 ENSMUSG00000086826.1 ENSMUSG00000086826 ENSMUST00000125269 Gm11739 antisense Interval_145927 chr7 42088893 42089298 + 0 NA Intergenic Intergenic 18090 ENSMUSG00000048574.9 ENSMUSG00000048574 ENSMUST00000155338 Ccnb1-ps processed_pseudogene Interval_75644 chr17 69712291 69712615 + 0 NA Intergenic Intergenic 63559 ENSMUSG00000117124.1 ENSMUSG00000117124 ENSMUST00000233218 Gm49895 lincRNA Interval_111881 chr4 32222497 32223024 + 0 NA Intergenic Intergenic 15612 ENSMUSG00000083564.1 ENSMUSG00000083564 ENSMUST00000118175 Gm11929 processed_pseudogene Interval_24372 chr11 32720550 32721071 + 0 NA TTS (ENSMUSG00000020271.17) protein_coding-TTS (ENSMUSG00000020271.17) 54829 ENSMUSG00000098054.1 ENSMUSG00000098054 ENSMUST00000182196 Gm8192 processed_pseudogene Interval_116079 chr4 107468043 107469005 + 0 NA intron (ENSMUSG00000034762.9, intron 1 of 9) protein_coding-intron (ENSMUSG00000034762.9, intron 2 of 10) 33952 ENSMUSG00000092723.1 ENSMUSG00000092723 ENSMUST00000174982 Gm24804 miRNA Interval_116333 chr4 109901217 109901528 + 0 NA intron (ENSMUSG00000010517.7, intron 5 of 5) protein_coding-intron (ENSMUSG00000010517.7, intron 15 of 18) 60587 ENSMUSG00000010517.7 ENSMUSG00000010517 ENSMUST00000155204 Faf1 protein_coding Interval_146172 chr7 44512691 44513351 + 0 NA intron (ENSMUSG00000038670.11, intron 13 of 27) protein_coding-intron (ENSMUSG00000038670.11, intron 13 of 27) -3943 ENSMUSG00000038670.11 ENSMUSG00000038670 ENSMUST00000207516 Mybpc2 protein_coding Interval_156595 chr8 54013341 54014874 + 0 NA Intergenic Intergenic -63672 ENSMUSG00000031520.6 ENSMUSG00000031520 ENSMUST00000210831 Vegfc protein_coding Interval_31490 chr11 100983034 100983852 + 0 NA Intergenic Intergenic -12892 ENSMUSG00000004044.9 ENSMUSG00000004044 ENSMUST00000132934 Cavin1 protein_coding Interval_19971 chr10 111589285 111589717 + 0 NA intron (ENSMUSG00000097082.1, intron 2 of 3) lincRNA-intron (ENSMUSG00000097082.1, intron 2 of 3) 4772 ENSMUSG00000097082.1 ENSMUSG00000097082 ENSMUST00000181547 4933440J02Rik lincRNA Interval_168624 chr9 84418522 84418728 + 0 NA Intergenic Intergenic -5359 ENSMUSG00000099927.1 ENSMUSG00000099927 ENSMUST00000190511 Gm8226 processed_pseudogene Interval_92988 chr2 69216924 69217163 + 0 NA intron (ENSMUSG00000005232.11, intron 1 of 4) protein_coding-intron (ENSMUSG00000005232.11, intron 1 of 4) -2985 ENSMUSG00000005232.11 ENSMUSG00000005232 ENSMUST00000151953 G6pc2 protein_coding Interval_131136 chr5 135358876 135359895 + 0 NA intron (ENSMUSG00000053388.10, intron 2 of 5) protein_coding-intron (ENSMUSG00000053388.10, intron 2 of 5) 6090 ENSMUSG00000053388.10 ENSMUSG00000053388 ENSMUST00000065785 Trim50 protein_coding Interval_96828 chr2 128657870 128658467 + 0 NA exon (ENSMUSG00000014355.10, exon 3 of 3) protein_coding-exon (ENSMUSG00000014355.10, exon 3 of 3) -29529 ENSMUSG00000014355.10 ENSMUSG00000014355 ENSMUST00000110332 Anapc1 protein_coding Interval_68467 chr16 77399834 77401340 + 0 NA promoter-TSS (ENSMUSG00000096870.2) TEC-promoter-TSS (ENSMUSG00000096870.2) 557 ENSMUSG00000096870.2 ENSMUSG00000096870 ENSMUST00000179255 Gm21816 TEC Interval_145306 chr7 31619458 31619912 + 0 NA promoter-TSS (ENSMUSG00000102002.1) unprocessed_pseudogene-promoter-TSS (ENSMUSG00000102002.1) -159 ENSMUSG00000102002.1 ENSMUSG00000102002 ENSMUST00000188132 Scgb2b6 unprocessed_pseudogene Interval_121669 chr5 4918101 4918795 + 0 NA intron (ENSMUSG00000028926.15, intron 11 of 13) protein_coding-intron (ENSMUSG00000028926.15, intron 12 of 14) -48182 ENSMUSG00000106472.1 ENSMUSG00000106472 ENSMUST00000197445 Gm43111 sense_intronic Interval_149752 chr7 101254204 101254425 + 0 NA TTS (ENSMUSG00000030691.15) protein_coding-TTS (ENSMUSG00000030691.15) -5355 ENSMUSG00000030691.15 ENSMUSG00000030691 ENSMUST00000208917 Fchsd2 protein_coding Interval_40753 chr12 108161986 108162862 + 0 NA intron (ENSMUSG00000056770.15, intron 4 of 6) protein_coding-intron (ENSMUSG00000056770.15, intron 3 of 12) 585 ENSMUSG00000056770.15 ENSMUSG00000056770 ENSMUST00000125916 Setd3 protein_coding Interval_9358 chr1 156569593 156569940 + 0 NA intron (ENSMUSG00000026596.13, intron 1 of 2) protein_coding-intron (ENSMUSG00000026596.13, intron 1 of 11) -13342 ENSMUSG00000104293.1 ENSMUSG00000104293 ENSMUST00000195501 Gm38043 TEC Interval_43 GL456212.1 58294 59171 + 0 NA NA NA NA NA Interval_149200 chr7 96230498 96231131 + 0 NA intron (ENSMUSG00000048078.16, intron 1 of 32) protein_coding-intron (ENSMUSG00000048078.16, intron 1 of 32) -18610 ENSMUSG00000076143.1 ENSMUSG00000076143 ENSMUST00000102189 Mir708 miRNA Interval_75827 chr17 71662593 71663373 + 0 NA Intergenic Intergenic 20287 ENSMUSG00000041057.10 ENSMUSG00000041057 ENSMUST00000234339 Wdr43 protein_coding Interval_88501 chr2 5655270 5655485 + 0 NA intron (ENSMUSG00000039145.16, intron 1 of 1) protein_coding-intron (ENSMUSG00000039145.16, intron 1 of 10) 51806 ENSMUSG00000082013.1 ENSMUSG00000082013 ENSMUST00000117145 Gm13216 processed_pseudogene Interval_69117 chr16 90767278 90767626 + 0 NA intron (ENSMUSG00000039929.14, intron 28 of 38) protein_coding-intron (ENSMUSG00000039929.14, intron 5 of 5) 29128 ENSMUSG00000039956.9 ENSMUSG00000039956 ENSMUST00000038197 Mrap protein_coding Interval_144861 chr7 28651318 28651532 + 0 NA intron (ENSMUSG00000108905.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000108905.1, intron 1 of 1) 9038 ENSMUSG00000108865.1 ENSMUSG00000108865 ENSMUST00000209122 Gm44617 processed_transcript Interval_106589 chr3 97549817 97550038 + 0 NA Intergenic Intergenic -60005 ENSMUSG00000105004.1 ENSMUSG00000105004 ENSMUST00000198613 Gm43075 TEC Interval_131790 chr5 139893005 139893237 + 0 NA Intergenic Intergenic -2688 ENSMUSG00000105335.1 ENSMUSG00000105335 ENSMUST00000196396 Gm42423 lincRNA Interval_55598 chr14 94789904 94790320 + 0 NA Intergenic Intergenic -54647 ENSMUSG00000115822.1 ENSMUSG00000115822 ENSMUST00000227716 Gm33450 lincRNA Interval_92906 chr2 68357112 68357328 + 0 NA intron (ENSMUSG00000027030.15, intron 3 of 10) protein_coding-intron (ENSMUSG00000027030.15, intron 10 of 17) 29461 ENSMUSG00000027030.15 ENSMUSG00000027030 ENSMUST00000149581 Stk39 protein_coding Interval_141207 chr6 125603287 125604781 + 0 NA intron (ENSMUSG00000001930.17, intron 1 of 14) protein_coding-intron (ENSMUSG00000001930.17, intron 14 of 51) 51071 ENSMUSG00000001930.17 ENSMUSG00000001930 ENSMUST00000146264 Vwf protein_coding Interval_92730 chr2 64724700 64725044 + 0 NA Intergenic Intergenic 143716 ENSMUSG00000084104.1 ENSMUSG00000084104 ENSMUST00000120849 Gm13578 processed_pseudogene Interval_28235 chr11 74584783 74585393 + 0 NA intron (ENSMUSG00000038807.19, intron 2 of 25) protein_coding-intron (ENSMUSG00000038807.19, intron 2 of 25) 25827 ENSMUSG00000038807.19 ENSMUSG00000038807 ENSMUST00000145524 Rap1gap2 protein_coding Interval_95269 chr2 105400616 105401007 + 0 NA Intergenic Intergenic -5463 ENSMUSG00000005973.6 ENSMUSG00000005973 ENSMUST00000127019 Rcn1 protein_coding Interval_43856 chr13 37628157 37628702 + 0 NA promoter-TSS (ENSMUSG00000114404.1) lincRNA-promoter-TSS (ENSMUSG00000114404.1) -826 ENSMUSG00000114404.1 ENSMUSG00000114404 ENSMUST00000225437 Gm40915 lincRNA Interval_150221 chr7 108305315 108305610 + 0 NA Intergenic Intergenic 2838 ENSMUSG00000109004.1 ENSMUSG00000109004 ENSMUST00000208982 Gm44594 processed_pseudogene Interval_16359 chr10 62451420 62452458 + 0 NA TTS (ENSMUSG00000097129.2) bidirectional_promoter_lncRNA-TTS (ENSMUSG00000097129.2) -2256 ENSMUSG00000020079.15 ENSMUSG00000020079 ENSMUST00000161941 Supv3l1 protein_coding Interval_14829 chr10 40338599 40339790 + 0 NA promoter-TSS (ENSMUSG00000038481.13) protein_coding-promoter-TSS (ENSMUSG00000038481.13) -370 ENSMUSG00000038481.13 ENSMUSG00000038481 ENSMUST00000214659 Cdk19 protein_coding Interval_104601 chr3 68693362 68694033 + 0 NA promoter-TSS (ENSMUSG00000027776.12) protein_coding-promoter-TSS (ENSMUSG00000027776.12) -324 ENSMUSG00000027776.12 ENSMUSG00000027776 ENSMUST00000195517 Il12a protein_coding Interval_136303 chr6 52793910 52794214 + 0 NA intron (ENSMUSG00000063568.11, intron 3 of 4) protein_coding-intron (ENSMUSG00000063568.11, intron 3 of 4) 49639 ENSMUSG00000081872.1 ENSMUSG00000081872 ENSMUST00000119248 Gm15572 processed_pseudogene Interval_95406 chr2 108622530 108623389 + 0 NA Intergenic Intergenic -44570 ENSMUSG00000083347.1 ENSMUSG00000083347 ENSMUST00000121126 Gm13913 processed_pseudogene Interval_172721 chrX 47925461 47925917 + 0 NA intron (ENSMUSG00000001173.15, intron 3 of 16) protein_coding-intron (ENSMUSG00000001173.15, intron 4 of 23) -12702 ENSMUSG00000001173.15 ENSMUSG00000001173 ENSMUST00000115013 Ocrl protein_coding Interval_96239 chr2 120866230 120866946 + 0 NA TTS (ENSMUSG00000087519.8) processed_transcript-TTS (ENSMUSG00000087519.8) 260 ENSMUSG00000087519.8 ENSMUSG00000087519 ENSMUST00000171483 AV039307 processed_transcript Interval_58008 chr15 25991110 25991601 + 0 NA TTS (ENSMUSG00000052253.6) protein_coding-TTS (ENSMUSG00000052253.6) 6989 ENSMUSG00000052253.6 ENSMUSG00000052253 ENSMUST00000227093 Zfp622 protein_coding Interval_99577 chr2 163320111 163320464 + 0 NA promoter-TSS (ENSMUSG00000074607.11) protein_coding-promoter-TSS (ENSMUSG00000074607.11) 77706 ENSMUSG00000017817.11 ENSMUSG00000017817 ENSMUST00000109425 Jph2 protein_coding Interval_84663 chr19 14819247 14819534 + 0 NA Intergenic Intergenic -100910 ENSMUSG00000084675.1 ENSMUSG00000084675 ENSMUST00000122726 Gm26026 snRNA Interval_57093 chr15 6056621 6057389 + 0 NA Intergenic Intergenic 22044 ENSMUSG00000115093.1 ENSMUSG00000115093 ENSMUST00000227373 Gm8047 processed_pseudogene Interval_45238 chr13 53415230 53416931 + 0 NA intron (ENSMUSG00000107008.3, intron 4 of 7) lincRNA-intron (ENSMUSG00000107008.3, intron 4 of 7) -1250 ENSMUSG00000107305.1 ENSMUSG00000107305 ENSMUST00000202970 Gm43262 lincRNA Interval_60280 chr15 72094052 72095773 + 0 NA Intergenic Intergenic -66434 ENSMUSG00000116068.1 ENSMUSG00000116068 ENSMUST00000229509 Gm49457 lincRNA Interval_154442 chr8 17498299 17499568 + 0 NA intron (ENSMUSG00000060924.15, intron 1 of 2) protein_coding-intron (ENSMUSG00000060924.15, intron 1 of 69) 36348 ENSMUSG00000060924.15 ENSMUSG00000060924 ENSMUST00000122983 Csmd1 protein_coding Interval_16187 chr10 61318688 61318974 + 0 NA TTS (ENSMUSG00000020092.9) protein_coding-TTS (ENSMUSG00000020092.9) 9001 ENSMUSG00000061488.5 ENSMUSG00000061488 ENSMUST00000075382 Rpl27a-ps1 processed_pseudogene Interval_161889 chr8 123465605 123466086 + 0 NA intron (ENSMUSG00000092329.1, intron 1 of 15) protein_coding-intron (ENSMUSG00000092329.1, intron 1 of 15) -5539 ENSMUSG00000088233.1 ENSMUSG00000088233 ENSMUST00000157608 Gm25428 snoRNA Interval_80516 chr18 43220951 43222081 + 0 NA intron (ENSMUSG00000039954.9, intron 2 of 11) protein_coding-intron (ENSMUSG00000039954.9, intron 2 of 12) 13839 ENSMUSG00000039954.9 ENSMUSG00000039954 ENSMUST00000235682 Stk32a protein_coding Interval_128569 chr5 114076791 114077346 + 0 NA intron (ENSMUSG00000042078.14, intron 1 of 6) protein_coding-intron (ENSMUSG00000042078.14, intron 1 of 15) 11554 ENSMUSG00000029592.11 ENSMUSG00000029592 ENSMUST00000198457 Usp30 protein_coding Interval_91306 chr2 37594728 37594965 + 0 NA promoter-TSS (ENSMUSG00000026915.16) protein_coding-promoter-TSS (ENSMUSG00000026915.16) -8328 ENSMUSG00000026915.16 ENSMUSG00000026915 ENSMUST00000144206 Strbp protein_coding Interval_159729 chr8 99604273 99604539 + 0 NA intron (ENSMUSG00000052479.5, intron 1 of 4) lincRNA-intron (ENSMUSG00000052479.5, intron 1 of 4) -59613 ENSMUSG00000083586.2 ENSMUSG00000083586 ENSMUST00000118240 Gm8688 unprocessed_pseudogene Interval_58796 chr15 38114550 38114952 + 0 NA Intergenic Intergenic 35649 ENSMUSG00000115771.1 ENSMUSG00000115771 ENSMUST00000228698 Gm49312 bidirectional_promoter_lncRNA Interval_80803 chr18 47348859 47349089 + 0 NA intron (ENSMUSG00000019647.16, intron 1 of 16) protein_coding-intron (ENSMUSG00000019647.16, intron 1 of 18) -15626 ENSMUSG00000019647.16 ENSMUSG00000019647 ENSMUST00000144223 Sema6a protein_coding Interval_116083 chr4 107489246 107490030 + 0 NA intron (ENSMUSG00000034762.9, intron 1 of 9) protein_coding-intron (ENSMUSG00000034762.9, intron 2 of 10) 55066 ENSMUSG00000092723.1 ENSMUSG00000092723 ENSMUST00000174982 Gm24804 miRNA Interval_38968 chr12 84186221 84186769 + 0 NA exon (ENSMUSG00000113776.1, exon 1 of 1) TEC-exon (ENSMUSG00000113776.1, exon 1 of 1) 1311 ENSMUSG00000113776.1 ENSMUSG00000113776 ENSMUST00000220651 Gm19327 TEC Interval_133356 chr6 3623964 3624178 + 0 NA Intergenic Intergenic 36020 ENSMUSG00000001376.17 ENSMUSG00000001376 ENSMUST00000184411 Vps50 protein_coding Interval_16236 chr10 61605498 61606347 + 0 NA intron (ENSMUSG00000020090.7, intron 1 of 3) protein_coding-intron (ENSMUSG00000020090.7, intron 1 of 3) 5152 ENSMUSG00000101792.1 ENSMUSG00000101792 ENSMUST00000186283 Gm28447 processed_transcript Interval_89621 chr2 23457134 23458319 + 0 NA Intergenic Intergenic -35205 ENSMUSG00000102704.1 ENSMUSG00000102704 ENSMUST00000192063 Gm38309 TEC Interval_31690 chr11 102272550 102272798 + 0 NA exon (ENSMUSG00000034768.4, exon 2 of 5) protein_coding-exon (ENSMUSG00000034768.4, exon 2 of 5) 3931 ENSMUSG00000034768.4 ENSMUSG00000034768 ENSMUST00000036467 Asb16 protein_coding Interval_116086 chr4 107537937 107538961 + 0 NA intron (ENSMUSG00000034762.9, intron 1 of 9) protein_coding-intron (ENSMUSG00000034762.9, intron 2 of 10) -42754 ENSMUSG00000034762.9 ENSMUSG00000034762 ENSMUST00000125573 Glis1 protein_coding Interval_126028 chr5 76956648 76957475 + 0 NA intron (ENSMUSG00000029247.17, intron 2 of 5) protein_coding-intron (ENSMUSG00000029247.17, intron 2 of 8) -5489 ENSMUSG00000029246.14 ENSMUSG00000029246 ENSMUST00000031158 Ppat protein_coding Interval_158751 chr8 85871727 85872163 + 0 NA intron (ENSMUSG00000036879.15, intron 2 of 4) protein_coding-intron (ENSMUSG00000036879.15, intron 2 of 31) -17508 ENSMUSG00000090043.1 ENSMUSG00000090043 ENSMUST00000160428 Gm16167 processed_pseudogene Interval_165480 chr9 48591459 48592337 + 0 NA TTS (ENSMUSG00000032271.13) protein_coding-TTS (ENSMUSG00000032271.13) 5477 ENSMUSG00000032271.13 ENSMUSG00000032271 ENSMUST00000128076 Nnmt protein_coding Interval_165157 chr9 44890828 44891837 + 0 NA Intergenic Intergenic -6533 ENSMUSG00000080358.1 ENSMUSG00000080358 ENSMUST00000116708 Gm26249 snRNA Interval_84101 chr19 7221623 7221884 + 0 NA Intergenic Intergenic -4210 ENSMUSG00000035885.5 ENSMUSG00000035885 ENSMUST00000237087 Cox8a protein_coding Interval_12351 chr1 192380319 192381132 + 0 NA intron (ENSMUSG00000058248.12, intron 7 of 10) protein_coding-intron (ENSMUSG00000058248.12, intron 7 of 10) -54015 ENSMUSG00000058248.12 ENSMUSG00000058248 ENSMUST00000151152 Kcnh1 protein_coding Interval_154613 chr8 22066188 22067135 + 0 NA intron (ENSMUSG00000063362.13, intron 3 of 3) protein_coding-intron (ENSMUSG00000063362.13, intron 3 of 3) -2355 ENSMUSG00000063362.13 ENSMUSG00000063362 ENSMUST00000134474 Alg11 protein_coding Interval_143473 chr7 7126964 7127984 + 0 NA exon (ENSMUSG00000063535.7, exon 4 of 4) protein_coding-exon (ENSMUSG00000063535.7, exon 4 of 4) 5314 ENSMUSG00000108959.1 ENSMUSG00000108959 ENSMUST00000207756 Gm44697 TEC Interval_108090 chr3 121450912 121451416 + 0 NA TTS (ENSMUSG00000053931.11) protein_coding-TTS (ENSMUSG00000053931.11) -5949 ENSMUSG00000053931.11 ENSMUSG00000053931 ENSMUST00000199499 Cnn3 protein_coding Interval_111801 chr4 29662871 29663060 + 0 NA Intergenic Intergenic 172809 ENSMUSG00000082058.1 ENSMUSG00000082058 ENSMUST00000118135 Gm11923 processed_pseudogene Interval_82730 chr18 76250780 76250987 + 0 NA intron (ENSMUSG00000024563.16, intron 1 of 5) protein_coding-intron (ENSMUSG00000024563.16, intron 1 of 9) 8709 ENSMUSG00000024563.16 ENSMUSG00000024563 ENSMUST00000113930 Smad2 protein_coding Interval_49632 chr13 113687620 113688621 + 0 NA Intergenic Intergenic 15802 ENSMUSG00000114417.1 ENSMUSG00000114417 ENSMUST00000223766 Gm34586 lincRNA Interval_138673 chr6 91059185 91060451 + 0 NA TTS (ENSMUSG00000030091.17) protein_coding-TTS (ENSMUSG00000030091.17) 38804 ENSMUSG00000030091.17 ENSMUSG00000030091 ENSMUST00000203434 Nup210 protein_coding Interval_138878 chr6 92827440 92828345 + 0 NA exon (ENSMUSG00000048636.7, exon 1 of 5) protein_coding-exon (ENSMUSG00000048636.7, exon 1 of 5) 260 ENSMUSG00000048636.7 ENSMUSG00000048636 ENSMUST00000133858 A730049H05Rik protein_coding Interval_12132 chr1 189933559 189933749 + 0 NA Intergenic Intergenic -11401 ENSMUSG00000026603.13 ENSMUSG00000026603 ENSMUST00000144452 Smyd2 protein_coding Interval_5441 chr1 88798390 88801403 + 0 NA Intergenic Intergenic 45006 ENSMUSG00000097398.2 ENSMUSG00000097398 ENSMUST00000180596 Platr5 lincRNA Interval_61750 chr15 83802975 83803478 + 0 NA intron (ENSMUSG00000041708.12, intron 2 of 4) protein_coding-intron (ENSMUSG00000041708.12, intron 3 of 6) 11212 ENSMUSG00000041708.12 ENSMUSG00000041708 ENSMUST00000148868 Mpped1 protein_coding Interval_74210 chr17 47492813 47494272 + 0 NA exon (ENSMUSG00000023980.7, exon 7 of 7) protein_coding-exon (ENSMUSG00000023980.7, exon 7 of 7) 8730 ENSMUSG00000023980.7 ENSMUSG00000023980 ENSMUST00000233675 Taf8 protein_coding Interval_110323 chr3 156847589 156847919 + 0 NA intron (ENSMUSG00000040037.13, intron 1 of 6) protein_coding-intron (ENSMUSG00000040037.13, intron 1 of 6) 31717 ENSMUSG00000083122.1 ENSMUSG00000083122 ENSMUST00000117320 Gm15578 unprocessed_pseudogene Interval_98357 chr2 151749632 151749956 + 0 NA exon (ENSMUSG00000086800.1, exon 1 of 2) lincRNA-exon (ENSMUSG00000086800.1, exon 1 of 2) 184 ENSMUSG00000086800.1 ENSMUSG00000086800 ENSMUST00000134422 4930556L07Rik lincRNA Interval_76116 chr17 75109919 75111404 + 0 NA intron (ENSMUSG00000001870.16, intron 3 of 34) protein_coding-intron (ENSMUSG00000001870.16, intron 3 of 33) -54546 ENSMUSG00000084025.1 ENSMUSG00000084025 ENSMUST00000120159 Gm6276 processed_pseudogene Interval_14540 chr10 35150833 35151575 + 0 NA Intergenic Intergenic 8891 ENSMUSG00000111216.1 ENSMUSG00000111216 ENSMUST00000216575 Gm47044 processed_pseudogene Interval_138962 chr6 93852711 93853001 + 0 NA intron (ENSMUSG00000045095.16, intron 2 of 24) protein_coding-intron (ENSMUSG00000045095.16, intron 2 of 21) -37759 ENSMUSG00000089069.1 ENSMUSG00000089069 ENSMUST00000158444 Gm22840 snoRNA Interval_41850 chr13 3520575 3520765 + 0 NA Intergenic Intergenic -33369 ENSMUSG00000021218.10 ENSMUSG00000021218 ENSMUST00000221581 Gdi2 protein_coding Interval_122651 chr5 24464242 24465242 + 0 NA intron (ENSMUSG00000023353.14, intron 1 of 8) protein_coding-intron (ENSMUSG00000023353.14, intron 1 of 17) 12535 ENSMUSG00000023353.14 ENSMUSG00000023353 ENSMUST00000199250 Agap3 protein_coding Interval_153921 chr8 11174169 11174432 + 0 NA Intergenic Intergenic -13455 ENSMUSG00000085573.1 ENSMUSG00000085573 ENSMUST00000151014 Gm15418 antisense Interval_93532 chr2 73886434 73886812 + 0 NA intron (ENSMUSG00000027104.18, intron 1 of 11) protein_coding-intron (ENSMUSG00000027104.18, intron 1 of 13) -23385 ENSMUSG00000027104.18 ENSMUSG00000027104 ENSMUST00000154965 Atf2 protein_coding Interval_117598 chr4 124925442 124925854 + 0 NA exon (ENSMUSG00000028873.16, exon 4 of 4) protein_coding-exon (ENSMUSG00000028873.16, exon 4 of 4) 13663 ENSMUSG00000028873.16 ENSMUSG00000028873 ENSMUST00000165281 Cdca8 protein_coding Interval_104380 chr3 64881392 64882127 + 0 NA Intergenic Intergenic 12837 ENSMUSG00000088824.1 ENSMUSG00000088824 ENSMUST00000158199 Gm25222 snoRNA Interval_93863 chr2 77684378 77684668 + 0 NA intron (ENSMUSG00000027016.17, intron 3 of 3) protein_coding-intron (ENSMUSG00000027016.17, intron 1 of 7) 18749 ENSMUSG00000027016.17 ENSMUSG00000027016 ENSMUST00000129077 Zfp385b protein_coding Interval_163790 chr9 25791319 25791743 + 0 NA Intergenic Intergenic 20216 ENSMUSG00000111760.1 ENSMUSG00000111760 ENSMUST00000215632 Gm48337 processed_pseudogene Interval_43397 chr13 30065444 30065930 + 0 NA Intergenic Intergenic 7010 ENSMUSG00000085188.1 ENSMUSG00000085188 ENSMUST00000139576 Gm11368 lincRNA Interval_121613 chr5 3905499 3905730 + 0 NA Intergenic Intergenic -11718 ENSMUSG00000040429.6 ENSMUSG00000040429 ENSMUST00000196417 Mterf1a protein_coding Interval_154581 chr8 21042274 21042574 + 0 NA Intergenic Intergenic -2064 ENSMUSG00000094406.1 ENSMUSG00000094406 ENSMUST00000101848 Gm23142 snRNA Interval_9807 chr1 162550008 162550468 + 0 NA Intergenic Intergenic -1709 ENSMUSG00000026694.19 ENSMUSG00000026694 ENSMUST00000195027 Eef1aknmt protein_coding Interval_93834 chr2 77323351 77324097 + 0 NA Intergenic Intergenic 8973 ENSMUSG00000085277.1 ENSMUSG00000085277 ENSMUST00000144043 Gm13943 lincRNA Interval_72435 chr17 29794953 29796348 + 0 NA Intergenic Intergenic 23737 ENSMUSG00000117489.1 ENSMUSG00000117489 ENSMUST00000234919 Gm50016 lincRNA Interval_108127 chr3 121735682 121737452 + 0 NA Intergenic Intergenic 7020 ENSMUSG00000028128.13 ENSMUSG00000028128 ENSMUST00000199997 F3 protein_coding Interval_96122 chr2 119908732 119909182 + 0 NA intron (ENSMUSG00000033943.15, intron 2 of 20) protein_coding-intron (ENSMUSG00000033943.15, intron 2 of 24) 11652 ENSMUSG00000033943.15 ENSMUSG00000033943 ENSMUST00000131396 Mga protein_coding Interval_41023 chr12 110671120 110672860 + 0 NA intron (ENSMUSG00000056508.6, intron 2 of 5) protein_coding-intron (ENSMUSG00000056508.6, intron 2 of 5) -2110 ENSMUSG00000098618.1 ENSMUSG00000098618 ENSMUST00000184593 Gm27299 miRNA Interval_119483 chr4 137866322 137866524 + 0 NA intron (ENSMUSG00000057530.14, intron 1 of 1) protein_coding-intron (ENSMUSG00000057530.14, intron 1 of 19) 17514 ENSMUSG00000085823.7 ENSMUSG00000085823 ENSMUST00000156022 Gm13012 antisense Interval_10837 chr1 175887994 175888622 + 0 NA TTS (ENSMUSG00000039748.11) protein_coding-TTS (ENSMUSG00000039748.11) 7514 ENSMUSG00000039748.11 ENSMUSG00000039748 ENSMUST00000192378 Exo1 protein_coding Interval_75003 chr17 59608084 59608364 + 0 NA Intergenic Intergenic 9083 ENSMUSG00000117184.1 ENSMUSG00000117184 ENSMUST00000233412 Gm49851 processed_pseudogene Interval_63301 chr15 100197123 100197535 + 0 NA intron (ENSMUSG00000023026.16, intron 28 of 37) protein_coding-intron (ENSMUSG00000023026.16, intron 23 of 32) -2018 ENSMUSG00000116366.1 ENSMUSG00000116366 ENSMUST00000229080 Gm49475 antisense Interval_88609 chr2 6621584 6622384 + 0 NA exon (ENSMUSG00000002107.18, exon 4 of 4) protein_coding-exon (ENSMUSG00000002107.18, exon 4 of 4) 142294 ENSMUSG00000102599.1 ENSMUSG00000102599 ENSMUST00000194293 Gm38386 TEC Interval_19175 chr10 95302261 95302619 + 0 NA intron (ENSMUSG00000045867.10, intron 2 of 2) protein_coding-intron (ENSMUSG00000045867.10, intron 2 of 2) 12413 ENSMUSG00000112744.1 ENSMUSG00000112744 ENSMUST00000219461 Gm48880 TEC Interval_143742 chr7 16011145 16013116 + 0 NA intron (ENSMUSG00000070808.4, intron 1 of 14) protein_coding-intron (ENSMUSG00000070808.4, intron 1 of 14) 35791 ENSMUSG00000070808.4 ENSMUSG00000070808 ENSMUST00000209251 Bicra protein_coding Interval_129700 chr5 121852787 121853151 + 0 NA TTS (ENSMUSG00000044134.9) protein_coding-TTS (ENSMUSG00000044134.9) 3985 ENSMUSG00000044134.9 ENSMUSG00000044134 ENSMUST00000198155 Pheta1 protein_coding Interval_53336 chr14 56368661 56369404 + 0 NA intron (ENSMUSG00000022229.3, intron 3 of 22) protein_coding-intron (ENSMUSG00000022229.3, intron 3 of 22) -6966 ENSMUSG00000022229.3 ENSMUSG00000022229 ENSMUST00000225698 Atp12a protein_coding Interval_30391 chr11 94073159 94073529 + 0 NA intron (ENSMUSG00000020859.16, intron 6 of 26) protein_coding-intron (ENSMUSG00000020859.16, intron 6 of 26) 29774 ENSMUSG00000020859.16 ENSMUSG00000020859 ENSMUST00000153076 Spag9 protein_coding Interval_118032 chr4 128500875 128501083 + 0 NA exon (ENSMUSG00000028804.20, exon 10 of 10) protein_coding-exon (ENSMUSG00000028804.20, exon 10 of 10) -51596 ENSMUSG00000028804.20 ENSMUSG00000028804 ENSMUST00000221199 Csmd2 protein_coding Interval_93707 chr2 76011445 76011768 + 0 NA intron (ENSMUSG00000075270.11, intron 19 of 19) protein_coding-intron (ENSMUSG00000075270.11, intron 19 of 19) -29639 ENSMUSG00000075271.4 ENSMUSG00000075271 ENSMUST00000099994 Ttc30a1 protein_coding Interval_139227 chr6 97328599 97329220 + 0 NA intron (ENSMUSG00000030064.16, intron 5 of 7) protein_coding-intron (ENSMUSG00000030064.16, intron 8 of 22) -37648 ENSMUSG00000030064.16 ENSMUSG00000030064 ENSMUST00000124050 Frmd4b protein_coding Interval_31161 chr11 98540027 98540552 + 0 NA intron (ENSMUSG00000018168.8, intron 1 of 2) protein_coding-intron (ENSMUSG00000018168.8, intron 1 of 7) -15154 ENSMUSG00000017195.15 ENSMUSG00000017195 ENSMUST00000126236 Zpbp2 protein_coding Interval_32153 chr11 105678267 105679323 + 0 NA intron (ENSMUSG00000053580.16, intron 1 of 3) protein_coding-intron (ENSMUSG00000053580.16, intron 3 of 25) 5373 ENSMUSG00000053580.16 ENSMUSG00000053580 ENSMUST00000147975 Tanc2 protein_coding Interval_66974 chr16 38952419 38953066 + 0 NA intron (ENSMUSG00000022790.14, intron 1 of 6) protein_coding-intron (ENSMUSG00000022790.14, intron 1 of 6) 25533 ENSMUSG00000089607.1 ENSMUSG00000089607 ENSMUST00000158982 Gm22500 snRNA Interval_53672 chr14 60777391 60778062 + 0 NA intron (ENSMUSG00000071347.3, intron 3 of 3) protein_coding-intron (ENSMUSG00000071347.3, intron 3 of 3) 6855 ENSMUSG00000084951.1 ENSMUSG00000084951 ENSMUST00000155855 Mipepos antisense Interval_70271 chr17 7873328 7873703 + 0 NA Intergenic Intergenic -46213 ENSMUSG00000071984.11 ENSMUSG00000071984 ENSMUST00000167580 Fndc1 protein_coding Interval_57797 chr15 20359320 20359883 + 0 NA Intergenic Intergenic 30111 ENSMUSG00000115086.1 ENSMUSG00000115086 ENSMUST00000227779 Gm49177 processed_pseudogene Interval_82919 chr18 79106035 79106517 + 0 NA intron (ENSMUSG00000024548.11, intron 1 of 5) protein_coding-intron (ENSMUSG00000024548.11, intron 1 of 5) 3115 ENSMUSG00000024548.11 ENSMUSG00000024548 ENSMUST00000025430 Setbp1 protein_coding Interval_42189 chr13 9700415 9701511 + 0 NA intron (ENSMUSG00000021156.17, intron 2 of 11) protein_coding-intron (ENSMUSG00000021156.17, intron 3 of 13) 16670 ENSMUSG00000114138.1 ENSMUSG00000114138 ENSMUST00000222421 Gm36423 antisense Interval_5988 chr1 93737558 93738284 + 0 NA intron (ENSMUSG00000101952.1, intron 1 of 2) protein_coding-intron (ENSMUSG00000026279.14, intron 2 of 5) 6817 ENSMUSG00000101952.1 ENSMUSG00000101952 ENSMUST00000188846 Gm10550 antisense Interval_45230 chr13 53333837 53335057 + 0 NA intron (ENSMUSG00000021468.8, intron 14 of 14) protein_coding-intron (ENSMUSG00000021468.8, intron 14 of 14) 42918 ENSMUSG00000021468.8 ENSMUSG00000021468 ENSMUST00000221709 Sptlc1 protein_coding Interval_31655 chr11 102049869 102050460 + 0 NA intron (ENSMUSG00000017309.11, intron 5 of 5) protein_coding-intron (ENSMUSG00000017309.11, intron 4 of 6) 8655 ENSMUSG00000017309.11 ENSMUSG00000017309 ENSMUST00000107164 Cd300lg protein_coding Interval_59358 chr15 51870981 51871238 + 0 NA Intergenic Intergenic -6369 ENSMUSG00000022313.10 ENSMUSG00000022313 ENSMUST00000136129 Utp23 protein_coding Interval_162924 chr9 13323250 13324050 + 0 NA intron (ENSMUSG00000031925.17, intron 1 of 4) protein_coding-intron (ENSMUSG00000031925.17, intron 1 of 4) 15436 ENSMUSG00000111212.1 ENSMUSG00000111212 ENSMUST00000213137 Gm47087 TEC Interval_149434 chr7 98489605 98490589 + 0 NA exon (ENSMUSG00000090958.2, exon 1 of 3) protein_coding-exon (ENSMUSG00000090958.2, exon 1 of 3) 400 ENSMUSG00000090958.2 ENSMUSG00000090958 ENSMUST00000165205 Lrrc32 protein_coding Interval_42179 chr13 9600913 9602070 + 0 NA exon (ENSMUSG00000048264.16, exon 20 of 39) protein_coding-exon (ENSMUSG00000048264.16, exon 20 of 39) -9315 ENSMUSG00000048264.16 ENSMUSG00000048264 ENSMUST00000222280 Dip2c protein_coding Interval_15295 chr10 44291807 44292620 + 0 NA intron (ENSMUSG00000038160.7, intron 3 of 7) protein_coding-intron (ENSMUSG00000038160.7, intron 3 of 7) 23798 ENSMUSG00000038160.7 ENSMUSG00000038160 ENSMUST00000217412 Atg5 protein_coding Interval_45872 chr13 58655525 58656239 + 0 NA Intergenic Intergenic 12957 ENSMUSG00000114380.1 ENSMUSG00000114380 ENSMUST00000225253 Gm47942 processed_pseudogene Interval_15362 chr10 45084048 45084724 + 0 NA intron (ENSMUSG00000019849.11, intron 2 of 14) protein_coding-intron (ENSMUSG00000019849.11, intron 2 of 14) 11322 ENSMUSG00000077082.1 ENSMUSG00000077082 ENSMUST00000103894 Gm23766 miRNA Interval_68187 chr16 67379862 67380205 + 0 NA intron (ENSMUSG00000064115.13, intron 1 of 9) protein_coding-intron (ENSMUSG00000064115.13, intron 1 of 9) -141683 ENSMUSG00000116904.1 ENSMUSG00000116904 ENSMUST00000232322 Gm49640 processed_pseudogene Interval_56081 chr14 105426477 105428007 + 0 NA promoter-TSS (ENSMUSG00000115548.1) lincRNA-promoter-TSS (ENSMUSG00000115548.1) -317 ENSMUSG00000115548.1 ENSMUSG00000115548 ENSMUST00000226670 5430440P10Rik lincRNA Interval_89220 chr2 18147014 18147382 + 0 NA intron (ENSMUSG00000026743.16, intron 4 of 4) protein_coding-intron (ENSMUSG00000026743.16, intron 9 of 22) -11489 ENSMUSG00000064964.1 ENSMUSG00000064964 ENSMUST00000083030 Gm25147 snRNA Interval_78733 chr18 19775418 19775766 + 0 NA Intergenic Intergenic 68499 ENSMUSG00000087960.1 ENSMUSG00000087960 ENSMUST00000157335 Gm25392 misc_RNA Interval_7681 chr1 133018830 133021123 + 0 NA intron (ENSMUSG00000054387.13, intron 1 of 5) protein_coding-intron (ENSMUSG00000054387.13, intron 1 of 10) 5381 ENSMUSG00000054387.13 ENSMUSG00000054387 ENSMUST00000186645 Mdm4 protein_coding Interval_153704 chr8 4785307 4785668 + 0 NA Intergenic Intergenic -5936 ENSMUSG00000022322.8 ENSMUSG00000022322 ENSMUST00000207725 Shcbp1 protein_coding Interval_113741 chr4 57946280 57947271 + 0 NA intron (ENSMUSG00000028367.5, intron 3 of 4) protein_coding-intron (ENSMUSG00000028367.5, intron 3 of 4) 9636 ENSMUSG00000028367.5 ENSMUSG00000028367 ENSMUST00000030051 Txn1 protein_coding Interval_128573 chr5 114105815 114106209 + 0 NA TTS (ENSMUSG00000029592.11) protein_coding-TTS (ENSMUSG00000029592.11) -2914 ENSMUSG00000106484.1 ENSMUSG00000106484 ENSMUST00000197629 Gm17833 processed_pseudogene Interval_136488 chr6 54889462 54890558 + 0 NA exon (ENSMUSG00000058446.14, exon 5 of 5) protein_coding-exon (ENSMUSG00000058446.14, exon 5 of 5) -12412 ENSMUSG00000107841.1 ENSMUSG00000107841 ENSMUST00000204539 Gm44185 TEC Interval_20835 chr10 121403259 121405756 + 0 NA Intergenic Intergenic 3794 ENSMUSG00000112209.1 ENSMUSG00000112209 ENSMUST00000218038 Gm18730 processed_pseudogene Interval_171884 chr9 122014236 122014987 + 0 NA Intergenic Intergenic -2471 ENSMUSG00000110729.1 ENSMUSG00000110729 ENSMUST00000215635 Gm47117 lincRNA Interval_89233 chr2 18232825 18233526 + 0 NA intron (ENSMUSG00000026740.12, intron 6 of 9) protein_coding-intron (ENSMUSG00000026740.12, intron 7 of 10) -16273 ENSMUSG00000026740.12 ENSMUSG00000026740 ENSMUST00000165793 Dnajc1 protein_coding Interval_71298 chr17 22018789 22019070 + 0 NA intron (ENSMUSG00000053347.15, intron 5 of 5) protein_coding-intron (ENSMUSG00000053347.15, intron 5 of 5) -11330 ENSMUSG00000040775.6 ENSMUSG00000040775 ENSMUST00000075018 Gm9772 processed_pseudogene Interval_56067 chr14 105291688 105292151 + 0 NA promoter-TSS (ENSMUSG00000053253.16) protein_coding-promoter-TSS (ENSMUSG00000053253.16) 1065 ENSMUSG00000086260.1 ENSMUSG00000086260 ENSMUST00000145241 Gm16259 processed_pseudogene Interval_131733 chr5 139557532 139560263 + 0 NA Intergenic Intergenic 14999 ENSMUSG00000029546.12 ENSMUSG00000029546 ENSMUST00000174792 Uncx protein_coding Interval_18685 chr10 89315015 89315183 + 0 NA intron (ENSMUSG00000035189.17, intron 3 of 6) protein_coding-intron (ENSMUSG00000035189.17, intron 3 of 10) -57509 ENSMUSG00000035189.17 ENSMUSG00000035189 ENSMUST00000180843 Ano4 protein_coding Interval_33513 chr11 116973631 116974801 + 0 NA TTS (ENSMUSG00000043857.16) protein_coding-TTS (ENSMUSG00000043857.16) 26881 ENSMUSG00000043857.16 ENSMUSG00000043857 ENSMUST00000126757 Mgat5b protein_coding Interval_82737 chr18 76307858 76308101 + 0 NA exon (ENSMUSG00000024563.16, exon 11 of 11) protein_coding-exon (ENSMUSG00000024563.16, exon 11 of 11) -13845 ENSMUSG00000117816.1 ENSMUSG00000117816 ENSMUST00000235901 Gm50360 processed_pseudogene Interval_87392 chr19 48344914 48345117 + 0 NA intron (ENSMUSG00000063434.6, intron 1 of 26) protein_coding-intron (ENSMUSG00000063434.6, intron 1 of 26) -84945 ENSMUSG00000063434.6 ENSMUSG00000063434 ENSMUST00000235967 Sorcs3 protein_coding Interval_54268 chr14 67018340 67018654 + 0 NA TTS (ENSMUSG00000022052.9) protein_coding-TTS (ENSMUSG00000022052.9) -18592 ENSMUSG00000022051.15 ENSMUSG00000022051 ENSMUST00000129605 Bnip3l protein_coding Interval_36465 chr12 45288117 45288768 + 0 NA Intergenic Intergenic -71257 ENSMUSG00000089226.1 ENSMUSG00000089226 ENSMUST00000158601 Gm22076 rRNA Interval_159129 chr8 90880983 90882293 + 0 NA intron (ENSMUSG00000056608.14, intron 2 of 39) protein_coding-intron (ENSMUSG00000056608.14, intron 2 of 39) 5057 ENSMUSG00000109812.1 ENSMUSG00000109812 ENSMUST00000210665 Gm45640 TEC Interval_39732 chr12 95760826 95761085 + 0 NA intron (ENSMUSG00000047414.6, intron 1 of 1) protein_coding-intron (ENSMUSG00000047414.6, intron 1 of 1) 26845 ENSMUSG00000112067.1 ENSMUSG00000112067 ENSMUST00000217888 Gm48015 TEC Interval_115720 chr4 102988352 102988685 + 0 NA promoter-TSS (ENSMUSG00000028523.14) protein_coding-promoter-TSS (ENSMUSG00000028523.14) 1237 ENSMUSG00000085181.1 ENSMUSG00000085181 ENSMUST00000149348 Gm12709 antisense Interval_48749 chr13 102727819 102728240 + 0 NA intron (ENSMUSG00000021624.9, intron 2 of 2) protein_coding-intron (ENSMUSG00000021624.9, intron 2 of 2) -32226 ENSMUSG00000091906.2 ENSMUSG00000091906 ENSMUST00000167834 1700099I09Rik antisense Interval_83439 chr18 85522168 85522358 + 0 NA Intergenic Intergenic 194462 ENSMUSG00000117854.1 ENSMUSG00000117854 ENSMUST00000237113 Gm7612 processed_pseudogene Interval_115261 chr4 94960775 94960984 + 0 NA intron (ENSMUSG00000062627.9, intron 9 of 19) protein_coding-intron (ENSMUSG00000062627.9, intron 9 of 19) 9772 ENSMUSG00000062627.9 ENSMUSG00000062627 ENSMUST00000136130 Mysm1 protein_coding Interval_117540 chr4 124511112 124511301 + 0 NA Intergenic Intergenic -57984 ENSMUSG00000073759.6 ENSMUSG00000073759 ENSMUST00000133499 4933407E24Rik lincRNA Interval_101550 chr3 5326931 5327157 + 0 NA intron (ENSMUSG00000025255.18, intron 2 of 9) protein_coding-intron (ENSMUSG00000025255.18, intron 3 of 10) 85372 ENSMUSG00000025255.18 ENSMUSG00000025255 ENSMUST00000176383 Zfhx4 protein_coding Interval_34248 chr11 121608600 121608890 + 0 NA intron (ENSMUSG00000039230.14, intron 6 of 9) protein_coding-intron (ENSMUSG00000039230.14, intron 35 of 38) 10429 ENSMUSG00000039230.14 ENSMUSG00000039230 ENSMUST00000151666 Tbcd protein_coding Interval_47487 chr13 85222269 85222990 + 0 NA promoter-TSS (ENSMUSG00000021549.14) protein_coding-promoter-TSS (ENSMUSG00000021549.14) 11307 ENSMUSG00000021548.10 ENSMUSG00000021548 ENSMUST00000166932 Ccnh protein_coding Interval_72274 chr17 28920883 28921283 + 0 NA Intergenic Intergenic -4380 ENSMUSG00000087693.1 ENSMUSG00000087693 ENSMUST00000141445 Gm16191 antisense Interval_52770 chr14 49649345 49649925 + 0 NA Intergenic Intergenic 63987 ENSMUSG00000082967.2 ENSMUSG00000082967 ENSMUST00000115992 Gm16082 processed_pseudogene Interval_106241 chr3 94859497 94860143 + 0 NA intron (ENSMUSG00000038902.14, intron 3 of 16) protein_coding-intron (ENSMUSG00000038902.14, intron 3 of 18) -17835 ENSMUSG00000038902.14 ENSMUSG00000038902 ENSMUST00000142253 Pogz protein_coding Interval_127032 chr5 99771287 99771637 + 0 NA Intergenic Intergenic -17489 ENSMUSG00000105218.4 ENSMUSG00000105218 ENSMUST00000197852 Gm38413 lincRNA Interval_156207 chr8 46035325 46035580 + 0 NA intron (ENSMUSG00000038291.16, intron 15 of 16) protein_coding-intron (ENSMUSG00000038291.16, intron 17 of 18) 24841 ENSMUSG00000031637.13 ENSMUSG00000031637 ENSMUST00000132341 Lrp2bp protein_coding Interval_21907 chr11 5130063 5131991 + 0 NA promoter-TSS (ENSMUSG00000034164.17) protein_coding-promoter-TSS (ENSMUSG00000034164.17) 21213 ENSMUSG00000034164.17 ENSMUSG00000034164 ENSMUST00000138551 Emid1 protein_coding Interval_67325 chr16 46183077 46184269 + 0 NA Intergenic Intergenic -28596 ENSMUSG00000048087.6 ENSMUSG00000048087 ENSMUST00000059524 Gm4737 protein_coding Interval_137250 chr6 70754793 70755215 + 0 NA Intergenic Intergenic 28569 ENSMUSG00000076609.2 ENSMUSG00000076609 ENSMUST00000103410 Igkc IG_C_gene Interval_154374 chr8 15076904 15078058 + 0 NA intron (ENSMUSG00000031461.4, intron 6 of 36) protein_coding-intron (ENSMUSG00000031461.4, intron 6 of 36) 23869 ENSMUSG00000083000.1 ENSMUSG00000083000 ENSMUST00000117573 Gm15678 processed_pseudogene Interval_150083 chr7 105715358 105715565 + 0 NA exon (ENSMUSG00000030882.19, exon 40 of 44) protein_coding-exon (ENSMUSG00000030882.19, exon 40 of 44) 18485 ENSMUSG00000030888.14 ENSMUSG00000030888 ENSMUST00000137902 Rrp8 protein_coding Interval_148984 chr7 90735436 90735797 + 0 NA intron (ENSMUSG00000052572.19, intron 4 of 27) protein_coding-intron (ENSMUSG00000052572.19, intron 4 of 27) 76545 ENSMUSG00000109074.1 ENSMUSG00000109074 ENSMUST00000209013 Gm45162 processed_pseudogene Interval_47711 chr13 91591315 91592264 + 0 NA intron (ENSMUSG00000003992.15, intron 4 of 6) protein_coding-intron (ENSMUSG00000003992.15, intron 4 of 16) 130619 ENSMUSG00000003992.15 ENSMUSG00000003992 ENSMUST00000137658 Ssbp2 protein_coding Interval_66533 chr16 34930149 34930845 + 0 NA intron (ENSMUSG00000022836.11, intron 1 of 5) protein_coding-intron (ENSMUSG00000022836.11, intron 17 of 31) 8832 ENSMUSG00000100593.1 ENSMUSG00000100593 ENSMUST00000187558 1700119H24Rik antisense Interval_151133 chr7 118749430 118750151 + 0 NA intron (ENSMUSG00000030982.19, intron 5 of 8) protein_coding-intron (ENSMUSG00000030982.19, intron 5 of 30) -8609 ENSMUSG00000108979.1 ENSMUSG00000108979 ENSMUST00000209027 1700016B15Rik TEC Interval_19219 chr10 95576166 95577295 + 0 NA Intergenic Intergenic -12584 ENSMUSG00000020029.6 ENSMUSG00000020029 ENSMUST00000020217 Nudt4 protein_coding Interval_278 KZ289068.1 488848 492097 + 0 NA NA NA NA NA Interval_147512 chr7 67875721 67875934 + 0 NA Intergenic Intergenic 10758 ENSMUSG00000109152.1 ENSMUSG00000109152 ENSMUST00000208544 Gm44666 processed_pseudogene Interval_144404 chr7 24954268 24955493 + 0 NA promoter-TSS (ENSMUSG00000108675.1) lincRNA-promoter-TSS (ENSMUSG00000108675.1) -37 ENSMUSG00000108675.1 ENSMUSG00000108675 ENSMUST00000206318 Gm44970 lincRNA Interval_17012 chr10 70421731 70421973 + 0 NA Intergenic Intergenic -6271 ENSMUSG00000112884.1 ENSMUSG00000112884 ENSMUST00000219437 Gm47946 lincRNA Interval_57648 chr15 13181018 13181420 + 0 NA Intergenic Intergenic -7544 ENSMUSG00000039385.5 ENSMUSG00000039385 ENSMUST00000226917 Cdh6 protein_coding Interval_146911 chr7 55819950 55820319 + 0 NA intron (ENSMUSG00000033790.11, intron 16 of 20) protein_coding-intron (ENSMUSG00000033790.11, intron 16 of 22) 25969 ENSMUSG00000033790.11 ENSMUSG00000033790 ENSMUST00000206133 Tubgcp5 protein_coding Interval_21811 chr11 4489545 4489904 + 0 NA exon (ENSMUSG00000034354.17, exon 15 of 18) protein_coding-exon (ENSMUSG00000034354.17, exon 15 of 18) -1358 ENSMUSG00000034354.17 ENSMUSG00000034354 ENSMUST00000144242 Mtmr3 protein_coding Interval_104303 chr3 63154948 63155615 + 0 NA Intergenic Intergenic 3064 ENSMUSG00000089175.1 ENSMUSG00000089175 ENSMUST00000158550 Gm22433 scaRNA Interval_123378 chr5 32010445 32010956 + 0 NA intron (ENSMUSG00000106894.1, intron 1 of 2) protein_coding-intron (ENSMUSG00000052139.18, intron 12 of 13) 163 ENSMUSG00000106894.1 ENSMUSG00000106894 ENSMUST00000201542 Gm17130 antisense Interval_59586 chr15 55611693 55611943 + 0 NA intron (ENSMUSG00000022369.13, intron 7 of 11) protein_coding-intron (ENSMUSG00000022369.13, intron 17 of 21) -5769 ENSMUSG00000022369.13 ENSMUSG00000022369 ENSMUST00000166449 Mtbp protein_coding Interval_84641 chr19 14597190 14599162 + 0 NA promoter-TSS (ENSMUSG00000024642.17) protein_coding-promoter-TSS (ENSMUSG00000024642.17) -2637 ENSMUSG00000024642.17 ENSMUSG00000024642 ENSMUST00000235975 Tle4 protein_coding Interval_37849 chr12 72520806 72521241 + 0 NA intron (ENSMUSG00000021090.16, intron 1 of 1) protein_coding-intron (ENSMUSG00000021090.16, intron 7 of 7) -15360 ENSMUSG00000034501.7 ENSMUSG00000034501 ENSMUST00000044352 Pcnx4 protein_coding Interval_35997 chr12 33182624 33184099 + 0 NA intron (ENSMUSG00000020564.17, intron 2 of 12) protein_coding-intron (ENSMUSG00000020564.17, intron 1 of 2) -35765 ENSMUSG00000052125.16 ENSMUSG00000052125 ENSMUST00000172344 F730043M19Rik bidirectional_promoter_lncRNA Interval_29021 chr11 79935825 79935992 + 0 NA TTS (ENSMUSG00000035575.11) protein_coding-TTS (ENSMUSG00000035575.11) 26459 ENSMUSG00000035575.11 ENSMUSG00000035575 ENSMUST00000146127 Utp6 protein_coding Interval_733 chr1 10256955 10257673 + 0 NA Intergenic Intergenic -58512 ENSMUSG00000102556.1 ENSMUSG00000102556 ENSMUST00000192111 Gm37569 TEC Interval_149899 chr7 102425668 102427057 + 0 NA promoter-TSS (ENSMUSG00000030987.5) protein_coding-promoter-TSS (ENSMUSG00000030987.5) -30108 ENSMUSG00000030978.10 ENSMUSG00000030978 ENSMUST00000209630 Rrm1 protein_coding Interval_21438 chr10 128612573 128613322 + 0 NA Intergenic Intergenic -2454 ENSMUSG00000112068.1 ENSMUSG00000112068 ENSMUST00000217829 Gm9182 processed_pseudogene Interval_126450 chr5 88652884 88653135 + 0 NA Intergenic Intergenic 6318 ENSMUSG00000029291.11 ENSMUSG00000029291 ENSMUST00000199956 Rufy3 protein_coding Interval_162427 chr8 128647813 128648198 + 0 NA Intergenic Intergenic -2992 ENSMUSG00000075864.1 ENSMUSG00000075864 ENSMUST00000101915 Gm26002 snRNA Interval_48678 chr13 101093288 101093942 + 0 NA Intergenic Intergenic -54369 ENSMUSG00000096722.2 ENSMUSG00000096722 ENSMUST00000179479 Hmgb1-ps9 processed_pseudogene Interval_116466 chr4 113605566 113606373 + 0 NA intron (ENSMUSG00000078598.11, intron 39 of 57) protein_coding-intron (ENSMUSG00000078598.11, intron 39 of 58) 237782 ENSMUSG00000083384.1 ENSMUSG00000083384 ENSMUST00000119615 Gm12813 unprocessed_pseudogene Interval_55374 chr14 86200298 86200494 + 0 NA Intergenic Intergenic -4346 ENSMUSG00000115836.1 ENSMUSG00000115836 ENSMUST00000227856 Gm49060 processed_pseudogene Interval_58841 chr15 38518107 38520048 + 0 NA promoter-TSS (ENSMUSG00000037458.15) protein_coding-promoter-TSS (ENSMUSG00000037458.15) 291 ENSMUSG00000115546.1 ENSMUSG00000115546 ENSMUST00000228225 Gm49077 antisense Interval_53063 chr14 54146658 54146887 + 0 NA promoter-TSS (ENSMUSG00000106112.1) antisense-promoter-TSS (ENSMUSG00000106112.1) -485 ENSMUSG00000106112.1 ENSMUSG00000106112 ENSMUST00000196615 Gm43434 antisense Interval_105706 chr3 88677163 88678449 + 0 NA Intergenic Intergenic 8591 ENSMUSG00000105512.1 ENSMUSG00000105512 ENSMUST00000198351 Gm43714 antisense Interval_2450 chr1 39450870 39451378 + 0 NA intron (ENSMUSG00000003134.10, intron 1 of 18) protein_coding-intron (ENSMUSG00000003134.10, intron 1 of 19) -31192 ENSMUSG00000102607.1 ENSMUSG00000102607 ENSMUST00000191698 Gm37265 TEC Interval_22097 chr11 6329366 6329590 + 0 NA intron (ENSMUSG00000020456.17, intron 5 of 23) protein_coding-intron (ENSMUSG00000020456.17, intron 4 of 22) 37493 ENSMUSG00000020456.17 ENSMUSG00000020456 ENSMUST00000081894 Ogdh protein_coding Interval_171800 chr9 121283766 121284731 + 0 NA intron (ENSMUSG00000110863.1, intron 2 of 2) bidirectional_promoter_lncRNA-intron (ENSMUSG00000110863.1, intron 2 of 2) 6472 ENSMUSG00000110863.1 ENSMUSG00000110863 ENSMUST00000215259 Gm34655 bidirectional_promoter_lncRNA Interval_163828 chr9 26968419 26968615 + 0 NA Intergenic Intergenic -5958 ENSMUSG00000111151.1 ENSMUSG00000111151 ENSMUST00000215231 Gm5120 processed_pseudogene Interval_4008 chr1 66276931 66278208 + 0 NA intron (ENSMUSG00000015222.18, intron 2 of 4) protein_coding-intron (ENSMUSG00000015222.18, intron 1 of 11) -28320 ENSMUSG00000088850.1 ENSMUSG00000088850 ENSMUST00000158225 Gm24729 snoRNA Interval_84445 chr19 10948474 10949852 + 0 NA promoter-TSS (ENSMUSG00000024732.7) protein_coding-promoter-TSS (ENSMUSG00000024732.7) 88 ENSMUSG00000024732.7 ENSMUSG00000024732 ENSMUST00000189018 Ccdc86 protein_coding Interval_101483 chr2 181763080 181763581 + 0 NA promoter-TSS (ENSMUSG00000010505.16) protein_coding-promoter-TSS (ENSMUSG00000010505.16) -4182 ENSMUSG00000010505.16 ENSMUSG00000010505 ENSMUST00000148766 Myt1 protein_coding Interval_47208 chr13 78094505 78094917 + 0 NA intron (ENSMUSG00000064138.14, intron 10 of 10) protein_coding-intron (ENSMUSG00000064138.14, intron 9 of 9) 15323 ENSMUSG00000114812.1 ENSMUSG00000114812 ENSMUST00000224621 Gm48254 processed_pseudogene Interval_110960 chr4 10873743 10875638 + 0 NA TTS (ENSMUSG00000106355.1) miRNA-TTS (ENSMUSG00000106355.1) 125 ENSMUSG00000059482.15 ENSMUSG00000059482 ENSMUST00000142026 2610301B20Rik protein_coding Interval_8015 chr1 135214537 135214742 + 0 NA Intergenic Intergenic -17356 ENSMUSG00000079139.4 ENSMUSG00000079139 ENSMUST00000110798 Gm4204 processed_pseudogene Interval_97555 chr2 139792009 139792953 + 0 NA Intergenic Intergenic -70816 ENSMUSG00000084207.1 ENSMUSG00000084207 ENSMUST00000120773 Gm14070 processed_pseudogene Interval_35609 chr12 25400022 25400235 + 0 NA TTS (ENSMUSG00000113669.1) lincRNA-TTS (ENSMUSG00000113669.1) 81943 ENSMUSG00000113669.1 ENSMUSG00000113669 ENSMUST00000221270 Gm36723 lincRNA Interval_75841 chr17 71737733 71738101 + 0 NA Intergenic Intergenic 14977 ENSMUSG00000044375.8 ENSMUSG00000044375 ENSMUST00000057405 Pcare protein_coding Interval_105425 chr3 86184462 86185261 + 0 NA Intergenic Intergenic -6555 ENSMUSG00000089394.1 ENSMUSG00000089394 ENSMUST00000158769 Gm23025 snRNA Interval_141112 chr6 125062798 125064358 + 0 NA TTS (ENSMUSG00000072770.9) protein_coding-TTS (ENSMUSG00000072770.9) 1389 ENSMUSG00000072770.9 ENSMUSG00000072770 ENSMUST00000136100 Acrbp protein_coding Interval_152908 chr7 139654634 139655050 + 0 NA intron (ENSMUSG00000049571.18, intron 14 of 21) protein_coding-intron (ENSMUSG00000049571.18, intron 16 of 58) 5313 ENSMUSG00000083626.1 ENSMUSG00000083626 ENSMUST00000118750 Gm4459 processed_pseudogene Interval_19994 chr10 111767718 111768327 + 0 NA exon (ENSMUSG00000112706.1, exon 1 of 1) processed_pseudogene-exon (ENSMUSG00000112706.1, exon 1 of 1) 244 ENSMUSG00000112706.1 ENSMUSG00000112706 ENSMUST00000219399 Gm46193 processed_pseudogene Interval_36358 chr12 41910336 41912397 + 0 NA intron (ENSMUSG00000056899.10, intron 5 of 5) protein_coding-intron (ENSMUSG00000056899.10, intron 6 of 6) -82843 ENSMUSG00000113105.1 ENSMUSG00000113105 ENSMUST00000221020 Gm47371 antisense Interval_25110 chr11 44182528 44182748 + 0 NA Intergenic Intergenic 84571 ENSMUSG00000086738.1 ENSMUSG00000086738 ENSMUST00000145584 Gm12154 lincRNA Interval_160198 chr8 107084893 107086049 + 0 NA intron (ENSMUSG00000031921.17, intron 3 of 10) protein_coding-intron (ENSMUSG00000031921.17, intron 3 of 10) -4030 ENSMUSG00000031921.17 ENSMUSG00000031921 ENSMUST00000136178 Terf2 protein_coding Interval_78881 chr18 21108421 21108614 + 0 NA Intergenic Intergenic -31408 ENSMUSG00000062962.5 ENSMUSG00000062962 ENSMUST00000084199 Gm6378 processed_pseudogene Interval_104368 chr3 64264822 64266208 + 0 NA exon (ENSMUSG00000091572.9, exon 6 of 7) protein_coding-exon (ENSMUSG00000091572.9, exon 6 of 7) 24194 ENSMUSG00000091572.9 ENSMUSG00000091572 ENSMUST00000170244 Vmn2r3 protein_coding Interval_163377 chr9 21152645 21153898 + 0 NA Intergenic Intergenic -10077 ENSMUSG00000019471.10 ENSMUSG00000019471 ENSMUST00000215866 Cdc37 protein_coding Interval_118698 chr4 133240555 133242115 + 0 NA exon (ENSMUSG00000028862.6, exon 1 of 29) protein_coding-exon (ENSMUSG00000028862.6, exon 1 of 29) -9514 ENSMUSG00000028862.6 ENSMUSG00000028862 ENSMUST00000134895 Map3k6 protein_coding Interval_69310 chr16 92118663 92119537 + 0 NA intron (ENSMUSG00000116930.1, intron 2 of 3) protein_coding-intron (ENSMUSG00000116930.1, intron 2 of 3) -7188 ENSMUSG00000116747.1 ENSMUSG00000116747 ENSMUST00000231220 Gm41496 lincRNA Interval_10482 chr1 171251634 171252991 + 0 NA promoter-TSS (ENSMUSG00000013593.12) protein_coding-promoter-TSS (ENSMUSG00000013593.12) -1061 ENSMUSG00000013593.12 ENSMUSG00000013593 ENSMUST00000191871 Ndufs2 protein_coding Interval_167463 chr9 69577620 69578761 + 0 NA Intergenic Intergenic 21564 ENSMUSG00000111096.1 ENSMUSG00000111096 ENSMUST00000215589 Gm47203 processed_pseudogene Interval_1304 chr1 19459909 19460113 + 0 NA Intergenic Intergenic 53908 ENSMUSG00000084668.1 ENSMUSG00000084668 ENSMUST00000122719 Gm24633 snoRNA Interval_55351 chr14 84276049 84276316 + 0 NA Intergenic Intergenic -115128 ENSMUSG00000115227.1 ENSMUSG00000115227 ENSMUST00000227972 Gm49057 processed_pseudogene Interval_92544 chr2 60443050 60443812 + 0 NA promoter-TSS (ENSMUSG00000054580.14) protein_coding-promoter-TSS (ENSMUSG00000054580.14) 31906 ENSMUSG00000087283.1 ENSMUSG00000087283 ENSMUST00000131457 Gm13580 antisense Interval_89440 chr2 20689321 20689835 + 0 NA intron (ENSMUSG00000036617.17, intron 5 of 5) protein_coding-intron (ENSMUSG00000036617.17, intron 4 of 18) 23656 ENSMUSG00000086418.1 ENSMUSG00000086418 ENSMUST00000137186 Gm13362 antisense Interval_41746 chr12 118644393 118644784 + 0 NA Intergenic Intergenic 41911 ENSMUSG00000114034.1 ENSMUSG00000114034 ENSMUST00000222831 Gm9267 processed_pseudogene Interval_95739 chr2 115581248 115582367 + 0 NA promoter-TSS (ENSMUSG00000040282.13) protein_coding-promoter-TSS (ENSMUSG00000040282.13) 91 ENSMUSG00000040282.13 ENSMUSG00000040282 ENSMUST00000147968 BC052040 protein_coding Interval_24005 chr11 29373192 29374486 + 0 NA promoter-TSS (ENSMUSG00000032740.17) protein_coding-promoter-TSS (ENSMUSG00000032740.17) -509 ENSMUSG00000032740.17 ENSMUSG00000032740 ENSMUST00000144450 Ccdc88a protein_coding Interval_150555 chr7 112397275 112397464 + 0 NA intron (ENSMUSG00000038244.14, intron 9 of 12) protein_coding-intron (ENSMUSG00000038244.14, intron 6 of 9) -30536 ENSMUSG00000030770.15 ENSMUSG00000030770 ENSMUST00000126047 Parva protein_coding Interval_128101 chr5 110877642 110878648 + 0 NA TTS (ENSMUSG00000104602.1) processed_pseudogene-TTS (ENSMUSG00000104602.1) 1542 ENSMUSG00000104602.1 ENSMUSG00000104602 ENSMUST00000198807 Gm42779 processed_pseudogene Interval_42768 chr13 19238356 19238720 + 0 NA Intergenic Intergenic -4307 ENSMUSG00000076750.6 ENSMUSG00000076750 ENSMUST00000103559 Trgv3 TR_V_gene Interval_93923 chr2 79378398 79379931 + 0 NA intron (ENSMUSG00000075256.9, intron 2 of 10) protein_coding-intron (ENSMUSG00000075256.9, intron 2 of 12) -8299 ENSMUSG00000075256.9 ENSMUSG00000075256 ENSMUST00000152413 Cerkl protein_coding Interval_96528 chr2 125321433 125321629 + 0 NA intron (ENSMUSG00000027204.13, intron 50 of 64) protein_coding-intron (ENSMUSG00000027204.13, intron 51 of 65) -37553 ENSMUSG00000087682.1 ENSMUSG00000087682 ENSMUST00000130919 Gm14003 lincRNA Interval_39465 chr12 88044412 88045970 + 0 NA promoter-TSS (ENSMUSG00000113180.1) processed_pseudogene-promoter-TSS (ENSMUSG00000113180.1) -479 ENSMUSG00000113180.1 ENSMUSG00000113180 ENSMUST00000221444 Gm46998 processed_pseudogene Interval_60181 chr15 67039184 67040210 + 0 NA promoter-TSS (ENSMUSG00000116289.1) lincRNA-promoter-TSS (ENSMUSG00000116289.1) -361 ENSMUSG00000116289.1 ENSMUSG00000116289 ENSMUST00000230911 Gm31342 lincRNA Interval_22752 chr11 14733117 14733290 + 0 NA Intergenic Intergenic 10586 ENSMUSG00000083427.1 ENSMUSG00000083427 ENSMUST00000120978 Gm12007 processed_pseudogene Interval_90525 chr2 30952147 30953619 + 0 NA promoter-TSS (ENSMUSG00000026848.14) protein_coding-promoter-TSS (ENSMUSG00000026848.14) -2370 ENSMUSG00000026848.14 ENSMUSG00000026848 ENSMUST00000195010 Tor1b protein_coding Interval_88598 chr2 6491043 6491393 + 0 NA Intergenic Intergenic 11528 ENSMUSG00000102599.1 ENSMUSG00000102599 ENSMUST00000194293 Gm38386 TEC Interval_122244 chr5 20646796 20647382 + 0 NA intron (ENSMUSG00000040003.18, intron 15 of 15) protein_coding-intron (ENSMUSG00000040003.18, intron 20 of 22) -55188 ENSMUSG00000073174.6 ENSMUSG00000073174 ENSMUST00000189302 Gm29254 3prime_overlapping_ncRNA Interval_131754 chr5 139676570 139676780 + 0 NA Intergenic Intergenic -24972 ENSMUSG00000104637.1 ENSMUSG00000104637 ENSMUST00000198319 Gm42424 processed_pseudogene Interval_171510 chr9 118949808 118951067 + 0 NA intron (ENSMUSG00000047409.13, intron 1 of 5) protein_coding-intron (ENSMUSG00000047409.13, intron 1 of 7) 20570 ENSMUSG00000047409.13 ENSMUSG00000047409 ENSMUST00000174132 Ctdspl protein_coding Interval_154881 chr8 24599223 24599420 + 0 NA Intergenic Intergenic -3655 ENSMUSG00000031551.12 ENSMUSG00000031551 ENSMUST00000033956 Ido1 protein_coding Interval_99235 chr2 158306127 158306780 + 0 NA promoter-TSS (ENSMUSG00000016024.9) protein_coding-promoter-TSS (ENSMUSG00000016024.9) -40 ENSMUSG00000016024.9 ENSMUSG00000016024 ENSMUST00000129811 Lbp protein_coding Interval_87330 chr19 47740746 47741674 + 0 NA intron (ENSMUSG00000044948.17, intron 12 of 16) protein_coding-intron (ENSMUSG00000044948.17, intron 34 of 37) 9006 ENSMUSG00000025066.10 ENSMUSG00000025066 ENSMUST00000237695 Sfr1 protein_coding Interval_64491 chr16 12588846 12589205 + 0 NA Intergenic Intergenic -115343 ENSMUSG00000116197.1 ENSMUSG00000116197 ENSMUST00000230690 Gm38619 lincRNA Interval_165280 chr9 46000937 46001261 + 0 NA intron (ENSMUSG00000003131.7, intron 1 of 3) protein_coding-intron (ENSMUSG00000003131.7, intron 1 of 3) -16316 ENSMUSG00000003131.7 ENSMUSG00000003131 ENSMUST00000214996 Pafah1b2 protein_coding Interval_74842 chr17 56830635 56831622 + 0 NA promoter-TSS (ENSMUSG00000024206.15) protein_coding-promoter-TSS (ENSMUSG00000024206.15) -189 ENSMUSG00000024206.15 ENSMUSG00000024206 ENSMUST00000233643 Rfx2 protein_coding Interval_61587 chr15 82804849 82806119 + 0 NA Intergenic Intergenic -1520 ENSMUSG00000116280.1 ENSMUSG00000116280 ENSMUST00000229945 Gm49435 unprocessed_pseudogene Interval_168749 chr9 86680010 86680396 + 0 NA intron (ENSMUSG00000032418.15, intron 1 of 13) protein_coding-intron (ENSMUSG00000032418.15, intron 1 of 13) 5005 ENSMUSG00000102259.1 ENSMUSG00000102259 ENSMUST00000193572 Gm38230 TEC Interval_17099 chr10 71344587 71348538 + 0 NA Intergenic Intergenic -1274 ENSMUSG00000060733.13 ENSMUSG00000060733 ENSMUST00000145521 Ipmk protein_coding Interval_141563 chr6 129333707 129334556 + 0 NA Intergenic Intergenic -7435 ENSMUSG00000047720.7 ENSMUSG00000047720 ENSMUST00000203159 Clec2m protein_coding Interval_155697 chr8 36222888 36223660 + 0 NA intron (ENSMUSG00000039633.7, intron 8 of 11) protein_coding-intron (ENSMUSG00000039633.7, intron 8 of 11) 26242 ENSMUSG00000039633.7 ENSMUSG00000039633 ENSMUST00000065297 Lonrf1 protein_coding Interval_154045 chr8 12201543 12201743 + 0 NA Intergenic Intergenic -77176 ENSMUSG00000074473.1 ENSMUSG00000074473 ENSMUST00000098935 A230072I06Rik protein_coding Interval_74283 chr17 47876851 47877742 + 0 NA TTS (ENSMUSG00000023991.16) protein_coding-TTS (ENSMUSG00000023991.16) 1657 ENSMUSG00000023991.16 ENSMUSG00000023991 ENSMUST00000153752 Foxp4 protein_coding Interval_155726 chr8 36531681 36531879 + 0 NA Intergenic Intergenic 42589 ENSMUSG00000039620.17 ENSMUSG00000039620 ENSMUST00000125492 Trmt9b protein_coding Interval_88938 chr2 13237556 13238340 + 0 NA TTS (ENSMUSG00000103232.1) TEC-TTS (ENSMUSG00000103232.1) 2679 ENSMUSG00000103232.1 ENSMUSG00000103232 ENSMUST00000193081 Gm37160 TEC Interval_100135 chr2 167253297 167254519 + 0 NA Intergenic Intergenic 27869 ENSMUSG00000083661.1 ENSMUSG00000083661 ENSMUST00000118980 Gm11473 processed_pseudogene Interval_115788 chr4 104337379 104338047 + 0 NA intron (ENSMUSG00000028519.16, intron 3 of 9) protein_coding-intron (ENSMUSG00000028519.16, intron 3 of 9) -267583 ENSMUSG00000028519.16 ENSMUSG00000028519 ENSMUST00000149672 Dab1 protein_coding Interval_153086 chr7 141268987 141269610 + 0 NA TTS (ENSMUSG00000025497.15) protein_coding-TTS (ENSMUSG00000025497.15) -2875 ENSMUSG00000025498.15 ENSMUSG00000025498 ENSMUST00000146373 Irf7 protein_coding Interval_144892 chr7 28791795 28792601 + 0 NA intron (ENSMUSG00000051735.7, intron 3 of 11) protein_coding-intron (ENSMUSG00000051735.7, intron 3 of 11) 3229 ENSMUSG00000051735.7 ENSMUSG00000051735 ENSMUST00000207345 Rinl protein_coding Interval_6875 chr1 120264711 120266857 + 0 NA promoter-TSS (ENSMUSG00000026389.16) protein_coding-promoter-TSS (ENSMUSG00000026389.16) -529 ENSMUSG00000026389.16 ENSMUSG00000026389 ENSMUST00000112643 Steap3 protein_coding Interval_60457 chr15 73864537 73865820 + 0 NA Intergenic Intergenic 30617 ENSMUSG00000086361.1 ENSMUSG00000086361 ENSMUST00000154520 Gm6569 protein_coding Interval_50153 chr14 8315754 8318073 + 0 NA intron (ENSMUSG00000021750.16, intron 1 of 3) protein_coding-intron (ENSMUSG00000021750.16, intron 1 of 3) -7118 ENSMUSG00000021750.16 ENSMUSG00000021750 ENSMUST00000137133 Fam107a protein_coding Interval_90837 chr2 32906828 32907043 + 0 NA intron (ENSMUSG00000026796.16, intron 2 of 2) protein_coding-intron (ENSMUSG00000026796.16, intron 2 of 13) -7776 ENSMUSG00000026796.16 ENSMUSG00000026796 ENSMUST00000151607 Fam129b protein_coding Interval_44216 chr13 42307252 42307520 + 0 NA exon (ENSMUSG00000021367.8, exon 5 of 5) protein_coding-exon (ENSMUSG00000021367.8, exon 5 of 5) -2395 ENSMUSG00000113619.1 ENSMUSG00000113619 ENSMUST00000221433 Gm47118 antisense Interval_52595 chr14 47785689 47786388 + 0 NA Intergenic Intergenic 15427 ENSMUSG00000115046.1 ENSMUSG00000115046 ENSMUST00000228127 Gm49302 lincRNA Interval_78568 chr18 14794486 14794677 + 0 NA intron (ENSMUSG00000054321.7, intron 1 of 14) protein_coding-intron (ENSMUSG00000054321.7, intron 1 of 14) 11336 ENSMUSG00000054321.7 ENSMUSG00000054321 ENSMUST00000169862 Taf4b protein_coding Interval_35037 chr12 16810590 16811750 + 0 NA promoter-TSS (ENSMUSG00000057469.8) protein_coding-promoter-TSS (ENSMUSG00000057469.8) -8536 ENSMUSG00000113897.1 ENSMUSG00000113897 ENSMUST00000222762 Gm48227 lincRNA Interval_54419 chr14 69190158 69191122 + 0 NA promoter-TSS (ENSMUSG00000022061.8) protein_coding-promoter-TSS (ENSMUSG00000022061.8) 2 ENSMUSG00000022061.8 ENSMUSG00000022061 ENSMUST00000022646 Nkx3-1 protein_coding Interval_56115 chr14 105894946 105895343 + 0 NA intron (ENSMUSG00000022114.5, intron 1 of 1) protein_coding-intron (ENSMUSG00000022114.5, intron 1 of 1) 1675 ENSMUSG00000022114.5 ENSMUSG00000022114 ENSMUST00000022709 Spry2 protein_coding Interval_39762 chr12 97606693 97606931 + 0 NA Intergenic Intergenic -41744 ENSMUSG00000112590.1 ENSMUSG00000112590 ENSMUST00000218781 Gm5186 processed_pseudogene Interval_3069 chr1 52864087 52864665 + 0 NA promoter-TSS (ENSMUSG00000041426.12) protein_coding-promoter-TSS (ENSMUSG00000041426.12) 9622 ENSMUSG00000089802.1 ENSMUSG00000089802 ENSMUST00000162523 Gm16107 processed_pseudogene Interval_33076 chr11 114205172 114206171 + 0 NA Intergenic Intergenic 7413 ENSMUSG00000078600.1 ENSMUSG00000078600 ENSMUST00000106604 1700092K14Rik processed_transcript Interval_46544 chr13 66991332 66992193 + 0 NA intron (ENSMUSG00000021518.4, intron 7 of 8) protein_coding-intron (ENSMUSG00000021518.4, intron 10 of 12) 15831 ENSMUSG00000114362.1 ENSMUSG00000114362 ENSMUST00000224762 4933433G19Rik antisense Interval_46368 chr13 64259844 64260259 + 0 NA intron (ENSMUSG00000097101.3, intron 1 of 2) protein_coding-intron (ENSMUSG00000033102.15, intron 1 of 13) -2063 ENSMUSG00000113603.1 ENSMUSG00000113603 ENSMUST00000221580 Gm47004 TEC Interval_166808 chr9 62870111 62871577 + 0 NA intron (ENSMUSG00000032246.14, intron 2 of 3) protein_coding-intron (ENSMUSG00000032246.14, intron 3 of 4) -2844 ENSMUSG00000074250.11 ENSMUSG00000074250 ENSMUST00000139570 Gm10653 transcribed_processed_pseudogene Interval_53938 chr14 63518017 63518503 + 0 NA Intergenic Intergenic 9899 ENSMUSG00000035078.6 ENSMUSG00000035078 ENSMUST00000058679 Mtmr9 protein_coding Interval_89041 chr2 14915648 14916260 + 0 NA intron (ENSMUSG00000057914.15, intron 2 of 7) protein_coding-intron (ENSMUSG00000057914.15, intron 2 of 7) -28954 ENSMUSG00000102673.1 ENSMUSG00000102673 ENSMUST00000194451 Gm37437 TEC Interval_113251 chr4 52234402 52235011 + 0 NA Intergenic Intergenic -6197 ENSMUSG00000083539.1 ENSMUSG00000083539 ENSMUST00000121199 Gm12466 processed_pseudogene Interval_142436 chr6 142249699 142250536 + 0 NA intron (ENSMUSG00000063975.13, intron 7 of 12) protein_coding-intron (ENSMUSG00000063975.13, intron 9 of 14) -11290 ENSMUSG00000088239.1 ENSMUSG00000088239 ENSMUST00000157614 Gm25430 misc_RNA Interval_130901 chr5 133801827 133802792 + 0 NA Intergenic Intergenic 40210 ENSMUSG00000106067.1 ENSMUSG00000106067 ENSMUST00000198842 Gm7902 processed_pseudogene Interval_70029 chr17 4754787 4755034 + 0 NA Intergenic Intergenic 38049 ENSMUSG00000116649.1 ENSMUSG00000116649 ENSMUST00000232212 Gm49780 processed_pseudogene Interval_127188 chr5 100930668 100931580 + 0 NA Intergenic Intergenic -17417 ENSMUSG00000106255.1 ENSMUSG00000106255 ENSMUST00000199211 Gm36793 lincRNA Interval_111476 chr4 21968297 21968646 + 0 NA intron (ENSMUSG00000028246.13, intron 4 of 5) protein_coding-intron (ENSMUSG00000028246.13, intron 4 of 5) 10015 ENSMUSG00000028246.13 ENSMUSG00000028246 ENSMUST00000155220 Faxc protein_coding Interval_140605 chr6 120026235 120026831 + 0 NA intron (ENSMUSG00000045962.16, intron 1 of 25) protein_coding-intron (ENSMUSG00000045962.16, intron 1 of 27) 7778 ENSMUSG00000076217.1 ENSMUSG00000076217 ENSMUST00000102262 Mir706 miRNA Interval_121522 chr5 3151610 3152775 + 0 NA Intergenic Intergenic 28415 ENSMUSG00000091483.1 ENSMUSG00000091483 ENSMUST00000162728 Gm8715 unprocessed_pseudogene Interval_34586 chr12 5865690 5866760 + 0 NA intron (ENSMUSG00000112404.1, intron 2 of 2) lincRNA-intron (ENSMUSG00000112404.1, intron 2 of 2) 22513 ENSMUSG00000088209.1 ENSMUSG00000088209 ENSMUST00000157584 Gm23752 rRNA Interval_20036 chr10 112382549 112384386 + 0 NA intron (ENSMUSG00000035681.7, intron 2 of 4) protein_coding-intron (ENSMUSG00000035681.7, intron 2 of 4) -72789 ENSMUSG00000035681.7 ENSMUSG00000035681 ENSMUST00000218827 Kcnc2 protein_coding Interval_75764 chr17 71125526 71126243 + 0 NA intron (ENSMUSG00000024049.15, intron 3 of 3) protein_coding-intron (ENSMUSG00000024049.15, intron 36 of 36) -18654 ENSMUSG00000117315.1 ENSMUSG00000117315 ENSMUST00000233463 1600022D10Rik lincRNA Interval_84970 chr19 20755108 20755624 + 0 NA Intergenic Intergenic -27804 ENSMUSG00000024747.3 ENSMUSG00000024747 ENSMUST00000025656 Aldh1a7 protein_coding Interval_131551 chr5 138096721 138097172 + 0 NA intron (ENSMUSG00000029729.12, intron 3 of 3) protein_coding-intron (ENSMUSG00000029729.12, intron 3 of 5) -9961 ENSMUSG00000106102.1 ENSMUSG00000106102 ENSMUST00000199837 Gm43493 processed_pseudogene Interval_172927 chrX 56345804 56346830 + 0 NA promoter-TSS (ENSMUSG00000073176.4) protein_coding-promoter-TSS (ENSMUSG00000073176.4) -83 ENSMUSG00000073176.4 ENSMUSG00000073176 ENSMUST00000101560 Zfp449 protein_coding Interval_67627 chr16 53772430 53772765 + 0 NA Intergenic Intergenic -112773 ENSMUSG00000080508.1 ENSMUSG00000080508 ENSMUST00000116858 Gm25041 miRNA Interval_35270 chr12 19291942 19292996 + 0 NA promoter-TSS (ENSMUSG00000073184.4) lincRNA-promoter-TSS (ENSMUSG00000073184.4) -344 ENSMUSG00000073184.4 ENSMUSG00000073184 ENSMUST00000101568 Gm49957 lincRNA Interval_53085 chr14 54360589 54362004 + 0 NA exon (ENSMUSG00000000959.7, exon 1 of 4) protein_coding-exon (ENSMUSG00000000959.7, exon 1 of 4) -6335 ENSMUSG00000000959.7 ENSMUSG00000000959 ENSMUST00000228719 Oxa1l protein_coding Interval_61769 chr15 83991427 83992893 + 0 NA intron (ENSMUSG00000022441.17, intron 6 of 31) protein_coding-intron (ENSMUSG00000022441.17, intron 6 of 31) -38179 ENSMUSG00000081925.1 ENSMUSG00000081925 ENSMUST00000117961 Rpl31-ps22 processed_pseudogene Interval_128580 chr5 114141158 114141604 + 0 NA Intergenic Intergenic 9301 ENSMUSG00000029591.14 ENSMUSG00000029591 ENSMUST00000200479 Ung protein_coding Interval_5804 chr1 92004012 92004766 + 0 NA exon (ENSMUSG00000026313.16, exon 1 of 1) protein_coding-exon (ENSMUSG00000026313.16, exon 1 of 1) 17708 ENSMUSG00000102565.1 ENSMUSG00000102565 ENSMUST00000192836 Gm37036 TEC Interval_56915 chr14 123202162 123202400 + 0 NA intron (ENSMUSG00000115016.1, intron 4 of 4) processed_transcript-intron (ENSMUSG00000115016.1, intron 4 of 4) -36796 ENSMUSG00000115758.1 ENSMUSG00000115758 ENSMUST00000226283 Gm49294 processed_pseudogene Interval_110480 chr3 159348584 159348800 + 0 NA Intergenic Intergenic -142726 ENSMUSG00000104864.1 ENSMUSG00000104864 ENSMUST00000197367 Gm43655 processed_pseudogene Interval_67591 chr16 51729411 51729851 + 0 NA Intergenic Intergenic 257656 ENSMUSG00000116725.1 ENSMUSG00000116725 ENSMUST00000232050 Gm29686 processed_transcript Interval_94919 chr2 101751222 101751738 + 0 NA intron (ENSMUSG00000032841.15, intron 4 of 8) protein_coding-intron (ENSMUSG00000032841.15, intron 4 of 8) 46227 ENSMUSG00000032841.15 ENSMUSG00000032841 ENSMUST00000127358 Prr5l protein_coding Interval_119640 chr4 138913367 138914534 + 0 NA promoter-TSS (ENSMUSG00000041161.8) protein_coding-promoter-TSS (ENSMUSG00000041161.8) -5 ENSMUSG00000041161.8 ENSMUSG00000041161 ENSMUST00000097830 Otud3 protein_coding Interval_173696 chrX 102070619 102071754 + 0 NA promoter-TSS (ENSMUSG00000049191.12) protein_coding-promoter-TSS (ENSMUSG00000049191.12) 118 ENSMUSG00000049191.12 ENSMUSG00000049191 ENSMUST00000139878 Rtl5 protein_coding Interval_135159 chr6 37054371 37054613 + 0 NA intron (ENSMUSG00000038665.15, intron 10 of 32) protein_coding-intron (ENSMUSG00000038665.15, intron 10 of 32) 97642 ENSMUSG00000107310.1 ENSMUSG00000107310 ENSMUST00000202891 Gm7452 transcribed_processed_pseudogene Interval_102049 chr3 16152123 16153540 + 0 NA Intergenic Intergenic -30405 ENSMUSG00000047213.14 ENSMUSG00000047213 ENSMUST00000108346 Ythdf3 protein_coding Interval_54547 chr14 70609611 70609807 + 0 NA intron (ENSMUSG00000022099.17, intron 9 of 13) protein_coding-intron (ENSMUSG00000022099.17, intron 10 of 15) -9874 ENSMUSG00000022095.9 ENSMUSG00000022095 ENSMUST00000022690 Fam160b2 protein_coding Interval_126752 chr5 92561981 92562565 + 0 NA exon (ENSMUSG00000057068.15, exon 2 of 9) protein_coding-exon (ENSMUSG00000057068.15, exon 2 of 9) -9204 ENSMUSG00000057068.15 ENSMUSG00000057068 ENSMUST00000082382 Fam47e protein_coding Interval_12181 chr1 190631654 190632834 + 0 NA Intergenic Intergenic 37918 ENSMUSG00000103963.1 ENSMUSG00000103963 ENSMUST00000191893 Gm30932 lincRNA Interval_51486 chr14 28238213 28239585 + 0 NA intron (ENSMUSG00000040640.11, intron 13 of 15) protein_coding-intron (ENSMUSG00000040640.11, intron 13 of 15) -177098 ENSMUSG00000114503.1 ENSMUSG00000114503 ENSMUST00000225453 Gm20242 TEC Interval_7672 chr1 132953490 132954007 + 0 NA Intergenic Intergenic -8428 ENSMUSG00000102709.1 ENSMUSG00000102709 ENSMUST00000194934 Gm38308 TEC Interval_121785 chr5 8178337 8178530 + 0 NA intron (ENSMUSG00000040537.17, intron 4 of 29) protein_coding-intron (ENSMUSG00000040537.17, intron 4 of 28) -1203 ENSMUSG00000094226.3 ENSMUSG00000094226 ENSMUST00000178345 Gm21759 processed_pseudogene Interval_52863 chr14 51187311 51187594 + 0 NA Intergenic Intergenic 11696 ENSMUSG00000047894.2 ENSMUSG00000047894 ENSMUST00000051274 Ang2 protein_coding Interval_154697 chr8 22660420 22661473 + 0 NA exon (ENSMUSG00000031537.15, exon 21 of 21) protein_coding-exon (ENSMUSG00000031537.15, exon 21 of 21) -7511 ENSMUSG00000031536.6 ENSMUSG00000031536 ENSMUST00000210950 Polb protein_coding Interval_116715 chr4 116799998 116800535 + 0 NA intron (ENSMUSG00000028688.13, intron 7 of 8) protein_coding-intron (ENSMUSG00000033985.17, intron 5 of 10) 4926 ENSMUSG00000028688.13 ENSMUSG00000028688 ENSMUST00000146246 Toe1 protein_coding Interval_94344 chr2 90076743 90077060 + 0 NA Intergenic Intergenic 9558 ENSMUSG00000075067.4 ENSMUSG00000075067 ENSMUST00000118957 Olfr1267-ps1 polymorphic_pseudogene Interval_33952 chr11 119627190 119627699 + 0 NA intron (ENSMUSG00000025583.15, intron 1 of 32) protein_coding-intron (ENSMUSG00000025583.15, intron 1 of 33) 19186 ENSMUSG00000083870.1 ENSMUSG00000083870 ENSMUST00000121392 Gm11761 processed_pseudogene Interval_25778 chr11 51648622 51651390 + 0 NA promoter-TSS (ENSMUSG00000052563.13) protein_coding-promoter-TSS (ENSMUSG00000052563.13) 831 ENSMUSG00000001053.15 ENSMUSG00000001053 ENSMUST00000142721 N4bp3 protein_coding Interval_145614 chr7 36029911 36030129 + 0 NA Intergenic Intergenic -67358 ENSMUSG00000108711.1 ENSMUSG00000108711 ENSMUST00000205504 Gm38991 lincRNA Interval_58613 chr15 36578223 36579611 + 0 NA Intergenic Intergenic -4627 ENSMUSG00000105494.1 ENSMUSG00000105494 ENSMUST00000175424 Gm44310 miRNA Interval_146487 chr7 46305175 46305706 + 0 NA exon (ENSMUSG00000009487.10, exon 51 of 56) protein_coding-exon (ENSMUSG00000009487.10, exon 51 of 56) 43933 ENSMUSG00000109962.1 ENSMUSG00000109962 ENSMUST00000210215 1700025L06Rik lincRNA Interval_98967 chr2 156391827 156393050 + 0 NA TTS (ENSMUSG00000102869.2) lincRNA-TTS (ENSMUSG00000102869.2) 541 ENSMUSG00000102869.2 ENSMUSG00000102869 ENSMUST00000192590 2900097C17Rik lincRNA Interval_75715 chr17 70834338 70835605 + 0 NA intron (ENSMUSG00000093622.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000093622.1, intron 1 of 1) 307 ENSMUSG00000093622.1 ENSMUSG00000093622 ENSMUST00000175668 Gm20703 lincRNA Interval_53344 chr14 56465914 56466134 + 0 NA intron (ENSMUSG00000000365.9, intron 4 of 13) protein_coding-intron (ENSMUSG00000000365.9, intron 15 of 36) -43259 ENSMUSG00000000365.9 ENSMUSG00000000365 ENSMUST00000225737 Rnf17 protein_coding Interval_78166 chr18 9596783 9598084 + 0 NA Intergenic Intergenic -16881 ENSMUSG00000088996.2 ENSMUSG00000088996 ENSMUST00000158371 Gm22765 snoRNA Interval_121162 chr4 153670006 153671162 + 0 NA Intergenic Intergenic -188405 ENSMUSG00000039546.9 ENSMUSG00000039546 ENSMUST00000149177 Ajap1 protein_coding Interval_30017 chr11 88709590 88710223 + 0 NA intron (ENSMUSG00000069769.13, intron 5 of 7) protein_coding-intron (ENSMUSG00000069769.13, intron 5 of 13) -8739 ENSMUSG00000087574.1 ENSMUSG00000087574 ENSMUST00000125967 C030037D09Rik lincRNA Interval_101290 chr2 180201659 180202095 + 0 NA intron (ENSMUSG00000015647.9, intron 9 of 78) protein_coding-intron (ENSMUSG00000015647.9, intron 9 of 78) -22054 ENSMUSG00000098735.1 ENSMUSG00000098735 ENSMUST00000185089 Mir7005 miRNA Interval_46912 chr13 73359547 73360368 + 0 NA Intergenic Intergenic -12573 ENSMUSG00000113346.2 ENSMUSG00000113346 ENSMUST00000223470 Eprn lincRNA Interval_151062 chr7 118252341 118253163 + 0 NA Intergenic Intergenic 8887 ENSMUSG00000055159.7 ENSMUSG00000055159 ENSMUST00000138180 4930583K01Rik bidirectional_promoter_lncRNA Interval_133853 chr6 13451311 13451613 + 0 NA Intergenic Intergenic 10495 ENSMUSG00000107500.1 ENSMUSG00000107500 ENSMUST00000204007 Gm2796 processed_pseudogene Interval_106922 chr3 101939103 101939572 + 0 NA Intergenic Intergenic -14888 ENSMUSG00000033147.16 ENSMUSG00000033147 ENSMUST00000182040 Slc22a15 protein_coding Interval_31618 chr11 101754011 101754606 + 0 NA intron (ENSMUSG00000034931.15, intron 14 of 20) protein_coding-intron (ENSMUSG00000034931.15, intron 16 of 22) 21279 ENSMUSG00000034931.15 ENSMUSG00000034931 ENSMUST00000141461 Dhx8 protein_coding Interval_137483 chr6 72707963 72708353 + 0 NA intron (ENSMUSG00000055799.13, intron 2 of 5) protein_coding-intron (ENSMUSG00000055799.13, intron 3 of 11) 8944 ENSMUSG00000079524.2 ENSMUSG00000079524 ENSMUST00000114051 Gm15402 antisense Interval_100348 chr2 168563797 168564012 + 0 NA intron (ENSMUSG00000027544.16, intron 3 of 6) protein_coding-intron (ENSMUSG00000027544.16, intron 3 of 6) 37751 ENSMUSG00000027544.16 ENSMUSG00000027544 ENSMUST00000138546 Nfatc2 protein_coding Interval_171427 chr9 118194240 118194645 + 0 NA Intergenic Intergenic 44211 ENSMUSG00000097402.1 ENSMUSG00000097402 ENSMUST00000181824 Gm17399 lincRNA Interval_120051 chr4 141537817 141539064 + 0 NA promoter-TSS (ENSMUSG00000040761.16) protein_coding-promoter-TSS (ENSMUSG00000040761.16) -7749 ENSMUSG00000048406.5 ENSMUSG00000048406 ENSMUST00000049927 B330016D10Rik pseudogene Interval_103268 chr3 37667426 37669329 + 0 NA Intergenic Intergenic 23770 ENSMUSG00000106062.1 ENSMUSG00000106062 ENSMUST00000199414 Gm43820 TEC Interval_107282 chr3 105421249 105421686 + 0 NA Intergenic Intergenic 30260 ENSMUSG00000074346.6 ENSMUSG00000074346 ENSMUST00000130683 Kcnd3os antisense Interval_98101 chr2 148054543 148054754 + 0 NA Intergenic Intergenic 1524 ENSMUSG00000099304.1 ENSMUSG00000099304 ENSMUST00000183823 Gm27420 miRNA Interval_63635 chr15 102461039 102462230 + 0 NA intron (ENSMUSG00000023048.13, intron 3 of 3) protein_coding-intron (ENSMUSG00000023048.13, intron 4 of 4) 2402 ENSMUSG00000023048.13 ENSMUSG00000023048 ENSMUST00000164688 Prr13 protein_coding Interval_29164 chr11 80906482 80907198 + 0 NA intron (ENSMUSG00000020704.13, intron 3 of 9) protein_coding-intron (ENSMUSG00000020704.13, intron 3 of 9) 48475 ENSMUSG00000053184.15 ENSMUSG00000053184 ENSMUST00000103222 Spaca3 protein_coding Interval_144816 chr7 28417524 28419043 + 0 NA intron (ENSMUSG00000109336.1, intron 2 of 12) protein_coding-intron (ENSMUSG00000109336.1, intron 2 of 12) -4376 ENSMUSG00000109336.1 ENSMUSG00000109336 ENSMUST00000208676 Samd4b protein_coding Interval_97057 chr2 130838930 130840660 + 0 NA promoter-TSS (ENSMUSG00000027309.18) protein_coding-promoter-TSS (ENSMUSG00000027309.18) -35813 ENSMUSG00000089662.1 ENSMUSG00000089662 ENSMUST00000120631 Gm14057 transcribed_processed_pseudogene Interval_116463 chr4 113311685 113312258 + 0 NA Intergenic Intergenic -28329 ENSMUSG00000087194.9 ENSMUSG00000087194 ENSMUST00000171224 Skint6 protein_coding Interval_89924 chr2 26516917 26517293 + 0 NA promoter-TSS (ENSMUSG00000026923.15) protein_coding-promoter-TSS (ENSMUSG00000026923.15) -41520 ENSMUSG00000082864.1 ENSMUSG00000082864 ENSMUST00000121427 Gm13358 processed_pseudogene Interval_2987 chr1 51906134 51907529 + 0 NA intron (ENSMUSG00000018417.14, intron 1 of 6) protein_coding-intron (ENSMUSG00000018417.14, intron 1 of 30) 9081 ENSMUSG00000018417.14 ENSMUSG00000018417 ENSMUST00000126657 Myo1b protein_coding Interval_87361 chr19 47946604 47947290 + 0 NA intron (ENSMUSG00000046585.9, intron 3 of 17) protein_coding-intron (ENSMUSG00000046585.9, intron 3 of 17) 9272 ENSMUSG00000046585.9 ENSMUSG00000046585 ENSMUST00000066308 Cfap58 protein_coding Interval_154642 chr8 22226972 22229024 + 0 NA intron (ENSMUSG00000031480.15, intron 1 of 3) protein_coding-intron (ENSMUSG00000031480.15, intron 1 of 4) 636 ENSMUSG00000031480.15 ENSMUSG00000031480 ENSMUST00000162447 Thsd1 protein_coding Interval_23362 chr11 21892578 21892814 + 0 NA intron (ENSMUSG00000020319.9, intron 17 of 17) protein_coding-intron (ENSMUSG00000020319.9, intron 17 of 17) -14746 ENSMUSG00000084004.1 ENSMUSG00000084004 ENSMUST00000117561 Gm12047 processed_pseudogene Interval_90349 chr2 29914297 29915751 + 0 NA TTS (ENSMUSG00000026790.19) protein_coding-TTS (ENSMUSG00000026790.19) 16499 ENSMUSG00000088348.1 ENSMUSG00000088348 ENSMUST00000157723 Gm23865 snRNA Interval_163958 chr9 29693851 29695034 + 0 NA intron (ENSMUSG00000059974.10, intron 1 of 2) protein_coding-intron (ENSMUSG00000059974.10, intron 1 of 7) -101932 ENSMUSG00000085638.1 ENSMUSG00000085638 ENSMUST00000141752 Gm15521 sense_intronic Interval_46517 chr13 66771982 66772961 + 0 NA Intergenic Intergenic -4970 ENSMUSG00000114226.1 ENSMUSG00000114226 ENSMUST00000223696 Gm48412 lincRNA Interval_33532 chr11 117076269 117077317 + 0 NA promoter-TSS (ENSMUSG00000086859.4) lincRNA-promoter-TSS (ENSMUSG00000086859.4) 329 ENSMUSG00000086859.4 ENSMUSG00000086859 ENSMUST00000182811 Snhg20 lincRNA Interval_54257 chr14 66934581 66934871 + 0 NA Intergenic Intergenic -2639 ENSMUSG00000104220.1 ENSMUSG00000104220 ENSMUST00000193416 4930578I07Rik TEC Interval_155734 chr8 36575999 36576752 + 0 NA exon (ENSMUSG00000031523.16, exon 1 of 3) protein_coding-exon (ENSMUSG00000031523.16, exon 1 of 3) 87184 ENSMUSG00000039620.17 ENSMUSG00000039620 ENSMUST00000125492 Trmt9b protein_coding Interval_25590 chr11 49985490 49986903 + 0 NA Intergenic Intergenic 22411 ENSMUSG00000020374.16 ENSMUSG00000020374 ENSMUST00000109172 Rasgef1c protein_coding Interval_83843 chr19 5050017 5051315 + 0 NA promoter-TSS (ENSMUSG00000024883.8) protein_coding-promoter-TSS (ENSMUSG00000024883.8) -160 ENSMUSG00000024883.8 ENSMUSG00000024883 ENSMUST00000224032 Rin1 protein_coding Interval_64788 chr16 15758856 15760688 + 0 NA exon (ENSMUSG00000022672.8, exon 54 of 86) protein_coding-exon (ENSMUSG00000022672.8, exon 54 of 86) 8849 ENSMUSG00000116118.1 ENSMUSG00000116118 ENSMUST00000229449 Gm49511 processed_pseudogene Interval_65681 chr16 25108006 25108245 + 0 NA Intergenic Intergenic 48486 ENSMUSG00000096960.1 ENSMUSG00000096960 ENSMUST00000181655 A230028O05Rik lincRNA Interval_88390 chr2 4656566 4657494 + 0 NA Intergenic Intergenic -4949 ENSMUSG00000039449.14 ENSMUSG00000039449 ENSMUST00000144650 Prpf18 protein_coding Interval_39325 chr12 86725755 86726902 + 0 NA intron (ENSMUSG00000021257.14, intron 1 of 9) protein_coding-intron (ENSMUSG00000021257.14, intron 1 of 9) -4389 ENSMUSG00000021257.14 ENSMUSG00000021257 ENSMUST00000171293 Angel1 protein_coding Interval_5936 chr1 93320245 93320746 + 0 NA exon (ENSMUSG00000026274.11, exon 11 of 18) protein_coding-exon (ENSMUSG00000026274.11, exon 11 of 18) -9151 ENSMUSG00000026274.11 ENSMUSG00000026274 ENSMUST00000128253 Pask protein_coding Interval_167675 chr9 71797971 71798251 + 0 NA Intergenic Intergenic 29426 ENSMUSG00000099220.1 ENSMUSG00000099220 ENSMUST00000183453 Gm27220 processed_pseudogene Interval_21144 chr10 126869370 126870405 + 0 NA intron (ENSMUSG00000025436.12, intron 5 of 5) protein_coding-intron (ENSMUSG00000025436.12, intron 5 of 5) -23226 ENSMUSG00000112423.1 ENSMUSG00000112423 ENSMUST00000218775 Gm6333 processed_pseudogene Interval_121934 chr5 10236614 10237205 + 0 NA promoter-TSS (ENSMUSG00000073226.9) lincRNA-promoter-TSS (ENSMUSG00000073226.9) 62 ENSMUSG00000100895.1 ENSMUSG00000100895 ENSMUST00000187545 Gm28685 processed_pseudogene Interval_35690 chr12 27598732 27599364 + 0 NA intron (ENSMUSG00000113421.1, intron 1 of 3) lincRNA-intron (ENSMUSG00000113421.1, intron 1 of 3) 847 ENSMUSG00000113421.1 ENSMUSG00000113421 ENSMUST00000220893 Gm4166 lincRNA Interval_20487 chr10 117891217 117891854 + 0 NA Intergenic Intergenic -24820 ENSMUSG00000112711.1 ENSMUSG00000112711 ENSMUST00000217849 Gm32552 lincRNA Interval_108214 chr3 122507957 122510238 + 0 NA TTS (ENSMUSG00000028121.8) protein_coding-TTS (ENSMUSG00000028121.8) 32584 ENSMUSG00000104773.1 ENSMUSG00000104773 ENSMUST00000196051 Mir7657 miRNA Interval_51625 chr14 30879512 30880394 + 0 NA intron (ENSMUSG00000042485.7, intron 1 of 2) protein_coding-intron (ENSMUSG00000042485.7, intron 1 of 2) 753 ENSMUSG00000042485.7 ENSMUSG00000042485 ENSMUST00000040715 Mustn1 protein_coding Interval_114452 chr4 78211214 78212528 + 0 NA promoter-TSS (ENSMUSG00000028399.18) protein_coding-promoter-TSS (ENSMUSG00000028399.18) -84 ENSMUSG00000092492.1 ENSMUSG00000092492 ENSMUST00000173049 B230208B08Rik processed_transcript Interval_117405 chr4 123527254 123527785 + 0 NA promoter-TSS (ENSMUSG00000028649.21) protein_coding-promoter-TSS (ENSMUSG00000028649.21) 37288 ENSMUSG00000089588.1 ENSMUSG00000089588 ENSMUST00000158963 Gm23548 misc_RNA Interval_163460 chr9 21539137 21539893 + 0 NA intron (ENSMUSG00000057191.13, intron 3 of 5) protein_coding-intron (ENSMUSG00000057191.13, intron 5 of 7) -5530 ENSMUSG00000092261.1 ENSMUSG00000092261 ENSMUST00000173684 Gm20519 processed_pseudogene Interval_1598 chr1 29137281 29137820 + 0 NA Intergenic Intergenic -82150 ENSMUSG00000101235.1 ENSMUSG00000101235 ENSMUST00000186678 Gm18033 processed_pseudogene Interval_98819 chr2 155306397 155306652 + 0 NA intron (ENSMUSG00000038383.16, intron 7 of 11) protein_coding-intron (ENSMUSG00000038383.16, intron 7 of 11) 29635 ENSMUSG00000027602.9 ENSMUSG00000027602 ENSMUST00000154596 Map1lc3a protein_coding Interval_45544 chr13 55743201 55743429 + 0 NA intron (ENSMUSG00000021496.12, intron 2 of 3) protein_coding-intron (ENSMUSG00000021496.12, intron 2 of 3) 15947 ENSMUSG00000021496.12 ENSMUSG00000021496 ENSMUST00000124968 Pcbd2 protein_coding Interval_123442 chr5 32593461 32594673 + 0 NA intron (ENSMUSG00000085234.1, intron 1 of 3) antisense-intron (ENSMUSG00000085234.1, intron 1 of 3) -17104 ENSMUSG00000014932.15 ENSMUSG00000014932 ENSMUST00000200999 Yes1 protein_coding Interval_101425 chr2 181301395 181302363 + 0 NA Intergenic Intergenic 9731 ENSMUSG00000084033.3 ENSMUSG00000084033 ENSMUST00000119008 Gm7645 processed_pseudogene Interval_71881 chr17 26701676 26702857 + 0 NA Intergenic Intergenic 26109 ENSMUSG00000015575.15 ENSMUSG00000015575 ENSMUST00000167352 Atp6v0e protein_coding Interval_169990 chr9 103463635 103464292 + 0 NA intron (ENSMUSG00000032556.11, intron 1 of 6) protein_coding-intron (ENSMUSG00000032556.11, intron 1 of 6) -14867 ENSMUSG00000032556.11 ENSMUSG00000032556 ENSMUST00000124310 Bfsp2 protein_coding Interval_58536 chr15 35914958 35915608 + 0 NA intron (ENSMUSG00000037646.10, intron 57 of 61) protein_coding-intron (ENSMUSG00000037646.10, intron 57 of 61) 21886 ENSMUSG00000014313.15 ENSMUSG00000014313 ENSMUST00000227231 Cox6c protein_coding Interval_123137 chr5 30044677 30044901 + 0 NA Intergenic Intergenic 28787 ENSMUSG00000025747.12 ENSMUSG00000025747 ENSMUST00000138520 Tyms protein_coding Interval_15199 chr10 43294835 43295357 + 0 NA intron (ENSMUSG00000038240.13, intron 1 of 7) protein_coding-intron (ENSMUSG00000038240.13, intron 1 of 7) -24264 ENSMUSG00000089673.1 ENSMUSG00000089673 ENSMUST00000159442 Gm16546 processed_pseudogene Interval_120670 chr4 150008238 150009589 + 0 NA exon (ENSMUSG00000028980.14, exon 1 of 5) protein_coding-exon (ENSMUSG00000028980.14, exon 1 of 5) -7648 ENSMUSG00000028980.14 ENSMUSG00000028980 ENSMUST00000152907 H6pd protein_coding Interval_151627 chr7 125471840 125472517 + 0 NA exon (ENSMUSG00000030750.13, exon 3 of 8) protein_coding-exon (ENSMUSG00000030750.13, exon 3 of 8) 6381 ENSMUSG00000030750.13 ENSMUSG00000030750 ENSMUST00000149289 Nsmce1 protein_coding Interval_155371 chr8 32723095 32723542 + 0 NA intron (ENSMUSG00000062991.9, intron 1 of 12) protein_coding-intron (ENSMUSG00000062991.9, intron 1 of 8) 219164 ENSMUSG00000079070.10 ENSMUSG00000079070 ENSMUST00000180220 Gm3985 lincRNA Interval_100577 chr2 170220866 170221379 + 0 NA Intergenic Intergenic -63913 ENSMUSG00000084013.1 ENSMUSG00000084013 ENSMUST00000118388 Gm14270 processed_pseudogene Interval_149484 chr7 99028079 99028389 + 0 NA intron (ENSMUSG00000035354.9, intron 7 of 11) protein_coding-intron (ENSMUSG00000035354.9, intron 6 of 14) -11590 ENSMUSG00000035354.9 ENSMUSG00000035354 ENSMUST00000208502 Uvrag protein_coding Interval_141818 chr6 134694136 134695770 + 0 NA intron (ENSMUSG00000042992.15, intron 3 of 3) protein_coding-intron (ENSMUSG00000042992.15, intron 3 of 3) 5094 ENSMUSG00000108166.1 ENSMUSG00000108166 ENSMUST00000203231 Gm44017 sense_intronic Interval_100248 chr2 167941681 167943182 + 0 NA intron (ENSMUSG00000027540.13, intron 2 of 4) protein_coding-intron (ENSMUSG00000027540.13, intron 1 of 8) 10059 ENSMUSG00000027540.13 ENSMUSG00000027540 ENSMUST00000142717 Ptpn1 protein_coding Interval_121985 chr5 12995513 12995990 + 0 NA Intergenic Intergenic 47683 ENSMUSG00000096810.1 ENSMUSG00000096810 ENSMUST00000179228 Gm10481 processed_pseudogene Interval_5919 chr1 93223864 93224470 + 0 NA exon (ENSMUSG00000084989.3, exon 30 of 32) protein_coding-exon (ENSMUSG00000084989.3, exon 30 of 32) -11684 ENSMUSG00000047793.13 ENSMUSG00000047793 ENSMUST00000165883 Sned1 protein_coding Interval_43850 chr13 37561708 37563213 + 0 NA intron (ENSMUSG00000114724.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000114724.1, intron 1 of 1) 2512 ENSMUSG00000114724.1 ENSMUSG00000114724 ENSMUST00000224689 Gm47751 lincRNA Interval_63081 chr15 99000490 99000684 + 0 NA Intergenic Intergenic -5470 ENSMUSG00000064081.4 ENSMUSG00000064081 ENSMUST00000079818 Gm8973 processed_pseudogene Interval_35233 chr12 18566033 18567777 + 0 NA Intergenic Intergenic 7290 ENSMUSG00000113604.1 ENSMUSG00000113604 ENSMUST00000222589 Gm19786 unprocessed_pseudogene Interval_125370 chr5 66515140 66515532 + 0 NA promoter-TSS (ENSMUSG00000029207.16) protein_coding-promoter-TSS (ENSMUSG00000029207.16) 10776 ENSMUSG00000107091.1 ENSMUSG00000107091 ENSMUST00000202454 Gm43343 TEC Interval_150640 chr7 113030039 113031242 + 0 NA Intergenic Intergenic 46737 ENSMUSG00000110207.1 ENSMUSG00000110207 ENSMUST00000210768 Gm33586 lincRNA Interval_53105 chr14 54482416 54482807 + 0 NA Intergenic Intergenic 6371 ENSMUSG00000022176.11 ENSMUSG00000022176 ENSMUST00000168930 Rem2 protein_coding Interval_153942 chr8 11405506 11405686 + 0 NA intron (ENSMUSG00000031503.13, intron 1 of 11) protein_coding-intron (ENSMUSG00000031503.13, intron 11 of 47) 12296 ENSMUSG00000084783.1 ENSMUSG00000084783 ENSMUST00000148654 Gm15419 antisense Interval_2029 chr1 35985486 35986960 + 0 NA intron (ENSMUSG00000102279.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000102279.1, intron 1 of 2) 150 ENSMUSG00000102279.1 ENSMUSG00000102279 ENSMUST00000192572 Gm37146 lincRNA Interval_66526 chr16 34806987 34807694 + 0 NA intron (ENSMUSG00000022836.11, intron 1 of 31) protein_coding-intron (ENSMUSG00000022836.11, intron 1 of 31) -97799 ENSMUSG00000022836.11 ENSMUSG00000022836 ENSMUST00000231589 Mylk protein_coding Interval_117502 chr4 124214809 124215200 + 0 NA Intergenic Intergenic 64173 ENSMUSG00000103541.1 ENSMUSG00000103541 ENSMUST00000193103 Gm37667 TEC Interval_22249 chr11 8096690 8097635 + 0 NA Intergenic Intergenic 16932 ENSMUSG00000082459.1 ENSMUSG00000082459 ENSMUST00000122321 Gm11988 processed_pseudogene Interval_118727 chr4 133406549 133408112 + 0 NA intron (ENSMUSG00000028854.9, intron 1 of 11) protein_coding-intron (ENSMUSG00000028854.9, intron 1 of 11) -8976 ENSMUSG00000028854.9 ENSMUSG00000028854 ENSMUST00000141658 Slc9a1 protein_coding Interval_79594 chr18 33923154 33923467 + 0 NA intron (ENSMUSG00000024376.7, intron 2 of 2) protein_coding-intron (ENSMUSG00000024376.7, intron 2 of 23) 83656 ENSMUSG00000024376.7 ENSMUSG00000024376 ENSMUST00000237971 Epb41l4a protein_coding Interval_163674 chr9 23967555 23967750 + 0 NA Intergenic Intergenic -27310 ENSMUSG00000110848.1 ENSMUSG00000110848 ENSMUST00000214658 Gm47663 lincRNA Interval_71050 chr17 17443673 17444842 + 0 NA intron (ENSMUSG00000047786.12, intron 3 of 5) protein_coding-intron (ENSMUSG00000047786.12, intron 3 of 5) -4563 ENSMUSG00000047786.12 ENSMUSG00000047786 ENSMUST00000140134 Lix1 protein_coding Interval_56908 chr14 123110825 123111040 + 0 NA intron (ENSMUSG00000115016.1, intron 1 of 3) processed_transcript-intron (ENSMUSG00000115016.1, intron 1 of 3) 54553 ENSMUSG00000115758.1 ENSMUSG00000115758 ENSMUST00000226283 Gm49294 processed_pseudogene Interval_150294 chr7 109387431 109387955 + 0 NA exon (ENSMUSG00000081370.1, exon 1 of 1) processed_pseudogene-exon (ENSMUSG00000081370.1, exon 1 of 1) 1182 ENSMUSG00000081370.1 ENSMUSG00000081370 ENSMUST00000120160 Gm9105 processed_pseudogene Interval_73757 chr17 43266874 43267277 + 0 NA Intergenic Intergenic -3254 ENSMUSG00000041293.5 ENSMUSG00000041293 ENSMUST00000047399 Adgrf1 protein_coding Interval_99048 chr2 156844425 156845471 + 0 NA intron (ENSMUSG00000085741.8, intron 1 of 1) protein_coding-intron (ENSMUSG00000062175.13, intron 2 of 3) 4767 ENSMUSG00000102323.1 ENSMUSG00000102323 ENSMUST00000193136 Gm37790 TEC Interval_24311 chr11 32283045 32283360 + 0 NA promoter-TSS (ENSMUSG00000069919.7) protein_coding-promoter-TSS (ENSMUSG00000069919.7) -609 ENSMUSG00000069919.7 ENSMUSG00000069919 ENSMUST00000142555 Hba-a1 protein_coding Interval_14869 chr10 40647375 40647801 + 0 NA exon (ENSMUSG00000063428.8, exon 5 of 5) protein_coding-exon (ENSMUSG00000063428.8, exon 5 of 5) 17511 ENSMUSG00000063428.8 ENSMUSG00000063428 ENSMUST00000214618 Ddo protein_coding Interval_81482 chr18 61042698 61043610 + 0 NA Intergenic Intergenic -2046 ENSMUSG00000024620.11 ENSMUSG00000024620 ENSMUST00000115274 Pdgfrb protein_coding Interval_67511 chr16 50045549 50047477 + 0 NA Intergenic Intergenic -64560 ENSMUSG00000098028.1 ENSMUSG00000098028 ENSMUST00000182962 Gm8824 processed_pseudogene Interval_156959 chr8 62422948 62423377 + 0 NA Intergenic Intergenic 65326 ENSMUSG00000109687.1 ENSMUSG00000109687 ENSMUST00000210003 Hspd1-ps2 processed_pseudogene Interval_57161 chr15 7085039 7085569 + 0 NA Intergenic Intergenic -5310 ENSMUSG00000054263.12 ENSMUSG00000054263 ENSMUST00000171588 Lifr protein_coding Interval_147591 chr7 68717517 68718064 + 0 NA Intergenic Intergenic 8677 ENSMUSG00000108876.1 ENSMUSG00000108876 ENSMUST00000207441 Gm44692 lincRNA Interval_111986 chr4 32997287 32997999 + 0 NA intron (ENSMUSG00000028278.14, intron 2 of 6) protein_coding-intron (ENSMUSG00000028278.14, intron 3 of 7) 4678 ENSMUSG00000081025.1 ENSMUSG00000081025 ENSMUST00000119473 Gm11943 processed_pseudogene Interval_99231 chr2 158269855 158270535 + 0 NA intron (ENSMUSG00000052922.9, intron 7 of 14) protein_coding-intron (ENSMUSG00000052922.9, intron 7 of 14) 12101 ENSMUSG00000052922.9 ENSMUSG00000052922 ENSMUST00000065039 Bpi protein_coding Interval_145772 chr7 38200657 38201509 + 0 NA Intergenic Intergenic 17185 ENSMUSG00000054676.15 ENSMUSG00000054676 ENSMUST00000179503 1600014C10Rik protein_coding Interval_56130 chr14 106292387 106292582 + 0 NA Intergenic Intergenic -24550 ENSMUSG00000115754.1 ENSMUSG00000115754 ENSMUST00000226755 Gm48972 lincRNA Interval_109751 chr3 146556201 146556588 + 0 NA Intergenic Intergenic 6875 ENSMUSG00000105407.1 ENSMUSG00000105407 ENSMUST00000197340 Gm36259 processed_pseudogene Interval_85004 chr19 21271560 21273043 + 0 NA promoter-TSS (ENSMUSG00000024750.11) protein_coding-promoter-TSS (ENSMUSG00000024750.11) 23 ENSMUSG00000024750.11 ENSMUSG00000024750 ENSMUST00000133175 Zfand5 protein_coding Interval_108587 chr3 129308230 129309414 + 0 NA intron (ENSMUSG00000028024.14, intron 6 of 17) protein_coding-intron (ENSMUSG00000028024.14, intron 6 of 19) 23442 ENSMUSG00000028024.14 ENSMUSG00000028024 ENSMUST00000165217 Enpep protein_coding Interval_157726 chr8 72539109 72539848 + 0 NA intron (ENSMUSG00000045248.6, intron 1 of 2) protein_coding-intron (ENSMUSG00000045248.6, intron 1 of 2) 2102 ENSMUSG00000094041.1 ENSMUSG00000094041 ENSMUST00000178138 Gm28019 miRNA Interval_91717 chr2 48730588 48731267 + 0 NA Intergenic Intergenic 79628 ENSMUSG00000082114.2 ENSMUSG00000082114 ENSMUST00000121234 Gm13489 processed_pseudogene Interval_12740 chr10 4617773 4617974 + 0 NA intron (ENSMUSG00000019768.16, intron 1 of 8) protein_coding-intron (ENSMUSG00000019768.16, intron 1 of 8) 6280 ENSMUSG00000019768.16 ENSMUSG00000019768 ENSMUST00000137012 Esr1 protein_coding Interval_69349 chr16 92389412 92389647 + 0 NA Intergenic Intergenic -6846 ENSMUSG00000116693.1 ENSMUSG00000116693 ENSMUST00000232607 Gm29805 lincRNA Interval_170713 chr9 110249086 110250730 + 0 NA intron (ENSMUSG00000032482.9, intron 1 of 3) protein_coding-intron (ENSMUSG00000032482.9, intron 2 of 4) 3843 ENSMUSG00000032482.9 ENSMUSG00000032482 ENSMUST00000199736 Cspg5 protein_coding Interval_157201 chr8 67660442 67660667 + 0 NA Intergenic Intergenic -31448 ENSMUSG00000104757.1 ENSMUSG00000104757 ENSMUST00000198490 Gm44391 miRNA Interval_104508 chr3 67003955 67004386 + 0 NA intron (ENSMUSG00000034544.17, intron 3 of 7) protein_coding-intron (ENSMUSG00000034544.17, intron 2 of 8) 13198 ENSMUSG00000034544.17 ENSMUSG00000034544 ENSMUST00000182708 Rsrc1 protein_coding Interval_155819 chr8 39343890 39344698 + 0 NA intron (ENSMUSG00000109827.1, intron 2 of 3) lincRNA-intron (ENSMUSG00000109827.1, intron 2 of 3) -32600 ENSMUSG00000109955.1 ENSMUSG00000109955 ENSMUST00000211458 Gm18644 processed_pseudogene Interval_167335 chr9 67517865 67518069 + 0 NA intron (ENSMUSG00000052698.15, intron 1 of 57) protein_coding-intron (ENSMUSG00000052698.15, intron 1 of 57) 93464 ENSMUSG00000111412.1 ENSMUSG00000111412 ENSMUST00000216972 Gm47047 antisense Interval_40985 chr12 110438455 110439061 + 0 NA Intergenic Intergenic -8549 ENSMUSG00000017843.14 ENSMUSG00000017843 ENSMUST00000221074 Ppp2r5c protein_coding Interval_94565 chr2 92278898 92279129 + 0 NA intron (ENSMUSG00000058318.15, intron 6 of 6) protein_coding-intron (ENSMUSG00000058318.15, intron 4 of 15) -33141 ENSMUSG00000081730.1 ENSMUSG00000081730 ENSMUST00000119099 Gm13785 processed_pseudogene Interval_38306 chr12 77010866 77011346 + 0 NA intron (ENSMUSG00000112857.1, intron 2 of 3) lincRNA-intron (ENSMUSG00000112857.1, intron 2 of 3) 31095 ENSMUSG00000112030.1 ENSMUSG00000112030 ENSMUST00000219319 Gm35189 lincRNA Interval_164043 chr9 31099850 31100340 + 0 NA TTS (ENSMUSG00000031995.9) protein_coding-TTS (ENSMUSG00000031995.9) 3443 ENSMUSG00000031995.9 ENSMUSG00000031995 ENSMUST00000123557 St14 protein_coding Interval_111685 chr4 25787676 25788488 + 0 NA intron (ENSMUSG00000055373.8, intron 1 of 2) protein_coding-intron (ENSMUSG00000055373.8, intron 1 of 2) 11773 ENSMUSG00000055373.8 ENSMUSG00000055373 ENSMUST00000149875 Fut9 protein_coding Interval_125438 chr5 67138267 67139384 + 0 NA Intergenic Intergenic 11322 ENSMUSG00000106995.1 ENSMUSG00000106995 ENSMUST00000201933 Gm33167 TEC Interval_108666 chr3 129932400 129932682 + 0 NA intron (ENSMUSG00000027994.14, intron 2 of 4) protein_coding-intron (ENSMUSG00000027994.14, intron 3 of 7) 31040 ENSMUSG00000027997.9 ENSMUSG00000027997 ENSMUST00000152622 Casp6 protein_coding Interval_166538 chr9 60718212 60718549 + 0 NA intron (ENSMUSG00000034839.5, intron 1 of 2) protein_coding-intron (ENSMUSG00000034839.5, intron 1 of 2) 5391 ENSMUSG00000034839.5 ENSMUSG00000034839 ENSMUST00000038407 Larp6 protein_coding Interval_81441 chr18 60772155 60772940 + 0 NA intron (ENSMUSG00000024608.11, intron 1 of 5) protein_coding-intron (ENSMUSG00000024608.11, intron 1 of 5) 6847 ENSMUSG00000080779.1 ENSMUSG00000080779 ENSMUST00000118088 Gm8731 processed_pseudogene Interval_69372 chr16 92540752 92541463 + 0 NA exon (ENSMUSG00000022949.9, exon 6 of 6) protein_coding-exon (ENSMUSG00000022949.9, exon 6 of 6) 12036 ENSMUSG00000116709.1 ENSMUSG00000116709 ENSMUST00000232213 Gm49722 lincRNA Interval_84161 chr19 7650381 7651444 + 0 NA Intergenic Intergenic -17375 ENSMUSG00000024761.3 ENSMUSG00000024761 ENSMUST00000025669 Gm16437 processed_pseudogene Interval_1937 chr1 34733237 34733462 + 0 NA intron (ENSMUSG00000037509.21, intron 1 of 10) protein_coding-intron (ENSMUSG00000037509.21, intron 3 of 13) -19426 ENSMUSG00000102537.1 ENSMUSG00000102537 ENSMUST00000192878 Gm37224 processed_pseudogene Interval_101118 chr2 178098003 178098393 + 0 NA Intergenic Intergenic -19773 ENSMUSG00000078861.8 ENSMUSG00000078861 ENSMUST00000108923 Zfp931 protein_coding Interval_121209 chr4 154070671 154071714 + 0 NA intron (ENSMUSG00000029026.17, intron 4 of 13) protein_coding-intron (ENSMUSG00000029026.17, intron 2 of 9) -22287 ENSMUSG00000087071.1 ENSMUSG00000087071 ENSMUST00000143429 Trp73os antisense Interval_60397 chr15 73481455 73482960 + 0 NA Intergenic Intergenic 15090 ENSMUSG00000115885.1 ENSMUSG00000115885 ENSMUST00000230637 Gm19811 processed_pseudogene Interval_125397 chr5 66675736 66678234 + 0 NA promoter-TSS (ENSMUSG00000087601.3) antisense-promoter-TSS (ENSMUSG00000087601.3) -952 ENSMUSG00000087601.3 ENSMUSG00000087601 ENSMUST00000177319 Uchl1os antisense Interval_94542 chr2 92045109 92045313 + 0 NA intron (ENSMUSG00000087197.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000087197.1, intron 1 of 1) 14158 ENSMUSG00000087018.1 ENSMUSG00000087018 ENSMUST00000123840 2900072N19Rik lincRNA Interval_117819 chr4 126407255 126407597 + 0 NA TTS (ENSMUSG00000028842.15) protein_coding-TTS (ENSMUSG00000028842.15) -3091 ENSMUSG00000028842.15 ENSMUSG00000028842 ENSMUST00000123233 Ago3 protein_coding Interval_156552 chr8 50967565 50967803 + 0 NA Intergenic Intergenic -50687 ENSMUSG00000110246.1 ENSMUSG00000110246 ENSMUST00000211313 C130073E24Rik lincRNA Interval_83049 chr18 80806752 80807323 + 0 NA intron (ENSMUSG00000024566.10, intron 1 of 4) protein_coding-intron (ENSMUSG00000024566.10, intron 12 of 29) -15210 ENSMUSG00000114891.1 ENSMUSG00000114891 ENSMUST00000225900 Gm47272 antisense Interval_116113 chr4 107834328 107835538 + 0 NA exon (ENSMUSG00000028613.15, exon 2 of 2) protein_coding-exon (ENSMUSG00000028613.15, exon 2 of 2) -4089 ENSMUSG00000028612.10 ENSMUSG00000028612 ENSMUST00000030352 Lrp8os1 antisense Interval_142192 chr6 138081492 138081777 + 0 NA Intergenic Intergenic -1718 ENSMUSG00000044378.12 ENSMUSG00000044378 ENSMUST00000154461 Slc15a5 protein_coding Interval_93495 chr2 73539680 73540828 + 0 NA Intergenic Intergenic 40084 ENSMUSG00000027107.3 ENSMUSG00000027107 ENSMUST00000028515 Chrna1 protein_coding Interval_52599 chr14 47805133 47806195 + 0 NA promoter-TSS (ENSMUSG00000115215.1) lincRNA-promoter-TSS (ENSMUSG00000115215.1) -345 ENSMUSG00000115215.1 ENSMUSG00000115215 ENSMUST00000226360 Gm41148 lincRNA Interval_5706 chr1 91096912 91097565 + 0 NA intron (ENSMUSG00000026305.15, intron 12 of 24) protein_coding-intron (ENSMUSG00000026305.15, intron 2 of 12) 43652 ENSMUSG00000026305.15 ENSMUSG00000026305 ENSMUST00000187532 Lrrfip1 protein_coding Interval_126851 chr5 94391827 94392737 + 0 NA Intergenic Intergenic 14965 ENSMUSG00000073497.6 ENSMUSG00000073497 ENSMUST00000202253 AA792892 protein_coding Interval_38659 chr12 80884220 80886167 + 0 NA Intergenic Intergenic -26284 ENSMUSG00000065115.1 ENSMUSG00000065115 ENSMUST00000083181 Gm23298 snRNA Interval_106800 chr3 100946980 100947602 + 0 NA promoter-TSS (ENSMUSG00000033222.16) protein_coding-promoter-TSS (ENSMUSG00000033222.16) -8150 ENSMUSG00000082000.1 ENSMUSG00000082000 ENSMUST00000122449 Gm12488 processed_pseudogene Interval_94027 chr2 81005924 81006533 + 0 NA Intergenic Intergenic -22039 ENSMUSG00000065261.1 ENSMUSG00000065261 ENSMUST00000083327 Gm23452 snRNA Interval_138423 chr6 88059311 88061015 + 0 NA Intergenic Intergenic -14932 ENSMUSG00000079477.9 ENSMUSG00000079477 ENSMUST00000204126 Rab7 protein_coding Interval_167597 chr9 70924928 70925159 + 0 NA intron (ENSMUSG00000032207.10, intron 1 of 8) protein_coding-intron (ENSMUSG00000032207.10, intron 1 of 8) -5445 ENSMUSG00000111631.1 ENSMUSG00000111631 ENSMUST00000215190 Gm32017 processed_transcript Interval_17382 chr10 76228899 76229193 + 0 NA intron (ENSMUSG00000020230.15, intron 2 of 5) protein_coding-intron (ENSMUSG00000020230.15, intron 2 of 10) -11291 ENSMUSG00000020230.15 ENSMUSG00000020230 ENSMUST00000217726 Prmt2 protein_coding Interval_9946 chr1 164314998 164315931 + 0 NA intron (ENSMUSG00000026575.15, intron 4 of 15) protein_coding-intron (ENSMUSG00000026575.15, intron 1 of 7) 7737 ENSMUSG00000026575.15 ENSMUSG00000026575 ENSMUST00000192710 Nme7 protein_coding Interval_12058 chr1 189235042 189235837 + 0 NA intron (ENSMUSG00000037624.15, intron 6 of 6) protein_coding-intron (ENSMUSG00000037624.15, intron 6 of 6) -24426 ENSMUSG00000103669.1 ENSMUSG00000103669 ENSMUST00000194444 2900042K21Rik sense_overlapping Interval_128167 chr5 111434392 111434639 + 0 NA intron (ENSMUSG00000070576.4, intron 1 of 1) protein_coding-intron (ENSMUSG00000070576.4, intron 1 of 1) 10926 ENSMUSG00000106560.1 ENSMUSG00000106560 ENSMUST00000196957 Gm43119 TEC Interval_122915 chr5 27306566 27307123 + 0 NA intron (ENSMUSG00000061576.15, intron 1 of 25) protein_coding-intron (ENSMUSG00000061576.15, intron 1 of 25) 88659 ENSMUSG00000106537.1 ENSMUSG00000106537 ENSMUST00000200263 Gm43502 TEC Interval_146074 chr7 43675121 43676719 + 0 NA intron (ENSMUSG00000038888.8, intron 2 of 2) protein_coding-intron (ENSMUSG00000038888.8, intron 2 of 2) 3904 ENSMUSG00000038888.8 ENSMUSG00000038888 ENSMUST00000038332 Ctu1 protein_coding Interval_96808 chr2 128447239 128447427 + 0 NA intron (ENSMUSG00000114963.1, intron 3 of 7) lincRNA-intron (ENSMUSG00000074813.14, intron 2 of 2) 13610 ENSMUSG00000114963.1 ENSMUSG00000114963 ENSMUST00000224297 Gm29010 lincRNA Interval_57386 chr15 10469779 10472036 + 0 NA promoter-TSS (ENSMUSG00000044224.16) protein_coding-promoter-TSS (ENSMUSG00000044224.16) 15002 ENSMUSG00000022247.12 ENSMUSG00000022247 ENSMUST00000168761 Brix1 protein_coding Interval_124106 chr5 38350501 38350905 + 0 NA TTS (ENSMUSG00000005107.13) protein_coding-TTS (ENSMUSG00000005107.13) 6268 ENSMUSG00000106932.1 ENSMUSG00000106932 ENSMUST00000201983 4930487D11Rik lincRNA Interval_8896 chr1 151884875 151885676 + 0 NA exon (ENSMUSG00000032666.16, exon 6 of 6) protein_coding-exon (ENSMUSG00000032666.16, exon 6 of 6) 9856 ENSMUSG00000100685.1 ENSMUSG00000100685 ENSMUST00000187716 Gm28610 antisense Interval_58343 chr15 32766251 32766716 + 0 NA intron (ENSMUSG00000115749.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000115749.1, intron 1 of 1) 6669 ENSMUSG00000115749.1 ENSMUSG00000115749 ENSMUST00000227504 Gm41289 lincRNA Interval_95162 chr2 104465908 104466225 + 0 NA intron (ENSMUSG00000027177.14, intron 2 of 16) protein_coding-intron (ENSMUSG00000027177.14, intron 2 of 15) -26814 ENSMUSG00000027177.14 ENSMUSG00000027177 ENSMUST00000132622 Hipk3 protein_coding Interval_14425 chr10 33474211 33474529 + 0 NA intron (ENSMUSG00000019787.9, intron 37 of 37) protein_coding-intron (ENSMUSG00000019787.9, intron 37 of 37) 3102 ENSMUSG00000112329.1 ENSMUSG00000112329 ENSMUST00000220089 Gm47908 TEC Interval_79850 chr18 35575624 35575924 + 0 NA exon (ENSMUSG00000102496.1, exon 1 of 1) TEC-exon (ENSMUSG00000102496.1, exon 1 of 1) 867 ENSMUSG00000102496.1 ENSMUSG00000102496 ENSMUST00000193225 Gm36989 TEC Interval_148257 chr7 80129317 80131542 + 0 NA Intergenic Intergenic -15125 ENSMUSG00000030541.16 ENSMUSG00000030541 ENSMUST00000134070 Idh2 protein_coding Interval_117110 chr4 119617964 119618163 + 0 NA intron (ENSMUSG00000032998.16, intron 6 of 11) protein_coding-intron (ENSMUSG00000032998.16, intron 7 of 12) -19641 ENSMUSG00000023247.2 ENSMUSG00000023247 ENSMUST00000024015 Guca2a protein_coding Interval_46695 chr13 69401692 69401940 + 0 NA promoter-TSS (ENSMUSG00000106556.1) miRNA-promoter-TSS (ENSMUSG00000106556.1) -419 ENSMUSG00000106556.1 ENSMUSG00000106556 ENSMUST00000196657 Gm44375 miRNA Interval_145140 chr7 30257514 30258303 + 0 NA intron (ENSMUSG00000037020.16, intron 12 of 32) protein_coding-intron (ENSMUSG00000037020.16, intron 12 of 32) -5355 ENSMUSG00000081565.1 ENSMUSG00000081565 ENSMUST00000118272 Rps12-ps5 processed_pseudogene Interval_4780 chr1 78588622 78589491 + 0 NA Intergenic Intergenic 20452 ENSMUSG00000099364.1 ENSMUSG00000099364 ENSMUST00000190504 5730419F03Rik lincRNA Interval_41534 chr12 116061822 116062554 + 0 NA exon (ENSMUSG00000042063.11, exon 3 of 3) protein_coding-exon (ENSMUSG00000042063.11, exon 3 of 3) 14412 ENSMUSG00000042063.11 ENSMUSG00000042063 ENSMUST00000182883 Zfp386 protein_coding Interval_817 chr1 11720249 11721433 + 0 NA intron (ENSMUSG00000057715.13, intron 7 of 12) protein_coding-intron (ENSMUSG00000057715.13, intron 7 of 13) 16634 ENSMUSG00000103561.1 ENSMUSG00000103561 ENSMUST00000195360 Gm38069 TEC Interval_171540 chr9 119100466 119100658 + 0 NA Intergenic Intergenic -1916 ENSMUSG00000038060.15 ENSMUSG00000038060 ENSMUST00000148611 Dlec1 protein_coding Interval_164156 chr9 32031720 32033162 + 0 NA Intergenic Intergenic 12417 ENSMUSG00000110845.1 ENSMUSG00000110845 ENSMUST00000216731 Gm47481 processed_pseudogene Interval_31119 chr11 98254114 98254338 + 0 NA intron (ENSMUSG00000003119.14, intron 4 of 7) protein_coding-intron (ENSMUSG00000003119.14, intron 4 of 7) -8380 ENSMUSG00000093176.1 ENSMUSG00000093176 ENSMUST00000175435 Mir5119 miRNA Interval_146062 chr7 43618436 43618890 + 0 NA TTS (ENSMUSG00000055102.15) protein_coding-TTS (ENSMUSG00000055102.15) 11454 ENSMUSG00000055102.15 ENSMUSG00000055102 ENSMUST00000116324 Zfp819 protein_coding Interval_29109 chr11 80391514 80392205 + 0 NA TTS (ENSMUSG00000017421.18) protein_coding-TTS (ENSMUSG00000017421.18) 8580 ENSMUSG00000017421.18 ENSMUSG00000017421 ENSMUST00000123726 Zfp207 protein_coding Interval_109359 chr3 139686938 139687166 + 0 NA intron (ENSMUSG00000047940.13, intron 12 of 13) protein_coding-intron (ENSMUSG00000047940.13, intron 12 of 13) 37673 ENSMUSG00000106574.1 ENSMUSG00000106574 ENSMUST00000199447 Gm2451 processed_pseudogene Interval_39728 chr12 95693893 95696119 + 0 NA promoter-TSS (ENSMUSG00000047414.6) protein_coding-promoter-TSS (ENSMUSG00000047414.6) -351 ENSMUSG00000047414.6 ENSMUSG00000047414 ENSMUST00000110117 Flrt2 protein_coding Interval_27328 chr11 66460088 66461417 + 0 NA intron (ENSMUSG00000053930.13, intron 1 of 1) protein_coding-intron (ENSMUSG00000053930.13, intron 2 of 4) 42062 ENSMUSG00000053930.13 ENSMUSG00000053930 ENSMUST00000134562 Shisa6 protein_coding Interval_20461 chr10 117745522 117746786 + 0 NA exon (ENSMUSG00000060181.6, exon 1 of 5) protein_coding-exon (ENSMUSG00000060181.6, exon 1 of 5) -1212 ENSMUSG00000060181.6 ENSMUSG00000060181 ENSMUST00000219482 Slc35e3 protein_coding Interval_38110 chr12 75696436 75696901 + 0 NA Intergenic Intergenic -27141 ENSMUSG00000045690.8 ENSMUSG00000045690 ENSMUST00000187307 Wdr89 protein_coding Interval_50325 chr14 11858241 11858688 + 0 NA intron (ENSMUSG00000021745.14, intron 2 of 3) protein_coding-intron (ENSMUSG00000021745.14, intron 2 of 29) -9130 ENSMUSG00000114431.1 ENSMUSG00000114431 ENSMUST00000224051 Gm48601 TEC Interval_100167 chr2 167441517 167441724 + 0 NA intron (ENSMUSG00000039463.14, intron 2 of 6) protein_coding-intron (ENSMUSG00000039463.14, intron 4 of 16) -9435 ENSMUSG00000039463.14 ENSMUSG00000039463 ENSMUST00000148454 Slc9a8 protein_coding Interval_151525 chr7 123251201 123252725 + 0 NA intron (ENSMUSG00000030769.15, intron 6 of 14) protein_coding-intron (ENSMUSG00000030769.15, intron 8 of 16) -13226 ENSMUSG00000030769.15 ENSMUSG00000030769 ENSMUST00000206180 Slc5a11 protein_coding Interval_168984 chr9 90027733 90028022 + 0 NA TTS (ENSMUSG00000032356.12) protein_coding-TTS (ENSMUSG00000032356.12) -3430 ENSMUSG00000088976.1 ENSMUSG00000088976 ENSMUST00000158351 Gm23759 misc_RNA Interval_22590 chr11 12008342 12008580 + 0 NA intron (ENSMUSG00000020176.17, intron 1 of 4) protein_coding-intron (ENSMUSG00000020176.17, intron 1 of 16) 17863 ENSMUSG00000020176.17 ENSMUSG00000020176 ENSMUST00000143915 Grb10 protein_coding Interval_164319 chr9 35300339 35300967 + 0 NA Intergenic Intergenic 6946 ENSMUSG00000111059.1 ENSMUSG00000111059 ENSMUST00000214038 Gm33838 lincRNA Interval_119529 chr4 138166676 138166967 + 0 NA intron (ENSMUSG00000028760.16, intron 17 of 33) protein_coding-intron (ENSMUSG00000028760.16, intron 18 of 34) 3612 ENSMUSG00000098513.1 ENSMUSG00000098513 ENSMUST00000184050 Mir6399 miRNA Interval_17612 chr10 78184481 78185599 + 0 NA intron (ENSMUSG00000032834.11, intron 1 of 20) protein_coding-intron (ENSMUSG00000032834.11, intron 1 of 20) 109 ENSMUSG00000032834.11 ENSMUSG00000032834 ENSMUST00000042556 Pwp2 protein_coding Interval_16471 chr10 63048838 63049619 + 0 NA intron (ENSMUSG00000020072.15, intron 4 of 4) protein_coding-intron (ENSMUSG00000020072.15, intron 4 of 9) -4982 ENSMUSG00000020072.15 ENSMUSG00000020072 ENSMUST00000130531 Pbld2 protein_coding Interval_142727 chr6 145179602 145180260 + 0 NA intron (ENSMUSG00000043541.16, intron 12 of 16) protein_coding-intron (ENSMUSG00000043541.16, intron 12 of 15) -2344 ENSMUSG00000086863.1 ENSMUSG00000086863 ENSMUST00000141307 Gm15543 antisense Interval_173783 chrX 104113997 104115898 + 0 NA intron (ENSMUSG00000046449.15, intron 1 of 4) protein_coding-intron (ENSMUSG00000046449.15, intron 1 of 3) 1327 ENSMUSG00000076286.1 ENSMUSG00000076286 ENSMUST00000102331 Mir672 miRNA Interval_124966 chr5 62569942 62570526 + 0 NA Intergenic Intergenic 43224 ENSMUSG00000105694.1 ENSMUSG00000105694 ENSMUST00000196835 Gm43237 TEC Interval_103894 chr3 54668661 54670291 + 0 NA Intergenic Intergenic -23382 ENSMUSG00000027751.13 ENSMUSG00000027751 ENSMUST00000198745 Supt20 protein_coding Interval_67987 chr16 62758313 62758881 + 0 NA intron (ENSMUSG00000050312.12, intron 5 of 5) protein_coding-intron (ENSMUSG00000050312.12, intron 5 of 5) 28169 ENSMUSG00000050312.12 ENSMUSG00000050312 ENSMUST00000231289 Nsun3 protein_coding Interval_43341 chr13 29422232 29422453 + 0 NA intron (ENSMUSG00000006191.17, intron 2 of 2) protein_coding-intron (ENSMUSG00000006191.17, intron 13 of 15) 95112 ENSMUSG00000006191.17 ENSMUSG00000006191 ENSMUST00000129231 Cdkal1 protein_coding Interval_46443 chr13 65296977 65298154 + 0 NA exon (ENSMUSG00000021514.18, exon 8 of 8) protein_coding-exon (ENSMUSG00000021514.18, exon 8 of 8) -4841 ENSMUSG00000021514.18 ENSMUSG00000021514 ENSMUST00000222364 Zfp369 protein_coding Interval_24977 chr11 42314522 42315254 + 0 NA intron (ENSMUSG00000020428.13, intron 8 of 8) protein_coding-intron (ENSMUSG00000020428.13, intron 8 of 8) 6163 ENSMUSG00000020428.13 ENSMUSG00000020428 ENSMUST00000109286 Gabra6 protein_coding Interval_141151 chr6 125271357 125272139 + 0 NA TTS (ENSMUSG00000108129.2) processed_transcript-TTS (ENSMUSG00000108129.2) 6129 ENSMUSG00000108129.2 ENSMUSG00000108129 ENSMUST00000205000 4930417O13Rik processed_transcript Interval_141384 chr6 127870323 127871204 + 0 NA Intergenic Intergenic 6483 ENSMUSG00000107060.1 ENSMUSG00000107060 ENSMUST00000202448 Gm38901 lincRNA Interval_124248 chr5 42146441 42146863 + 0 NA intron (ENSMUSG00000067285.4, intron 1 of 2) protein_coding-intron (ENSMUSG00000067285.4, intron 1 of 2) 78692 ENSMUSG00000067285.4 ENSMUSG00000067285 ENSMUST00000087332 Gm16223 protein_coding Interval_70255 chr17 7270179 7271069 + 0 NA intron (ENSMUSG00000023809.10, intron 2 of 6) protein_coding-intron (ENSMUSG00000023809.10, intron 10 of 20) 45222 ENSMUSG00000116935.1 ENSMUSG00000116935 ENSMUST00000231254 Gpr31a processed_pseudogene Interval_78867 chr18 21044467 21045213 + 0 NA Intergenic Intergenic -27504 ENSMUSG00000024313.8 ENSMUSG00000024313 ENSMUST00000082235 Mep1b protein_coding Interval_5783 chr1 91776912 91778931 + 0 NA Intergenic Intergenic -23549 ENSMUSG00000007805.4 ENSMUSG00000007805 ENSMUST00000186075 Twist2 protein_coding Interval_129923 chr5 123075684 123077129 + 0 NA promoter-TSS (ENSMUSG00000054434.14) protein_coding-promoter-TSS (ENSMUSG00000054434.14) 36 ENSMUSG00000054434.14 ENSMUSG00000054434 ENSMUST00000161049 Tmem120b protein_coding Interval_140579 chr6 119792527 119793170 + 0 NA intron (ENSMUSG00000030172.15, intron 3 of 19) protein_coding-intron (ENSMUSG00000030172.15, intron 2 of 18) -100072 ENSMUSG00000080719.1 ENSMUSG00000080719 ENSMUST00000121192 Gm15532 processed_pseudogene Interval_106756 chr3 100488292 100490318 + 0 NA promoter-TSS (ENSMUSG00000044468.14) protein_coding-promoter-TSS (ENSMUSG00000044468.14) -111 ENSMUSG00000044468.14 ENSMUSG00000044468 ENSMUST00000061455 Tent5c protein_coding Interval_153219 chr7 142537676 142538233 + 0 NA TTS (ENSMUSG00000037772.13) protein_coding-TTS (ENSMUSG00000037772.13) 4793 ENSMUSG00000037772.13 ENSMUSG00000037772 ENSMUST00000141098 Mrpl23 protein_coding Interval_87277 chr19 47346077 47346375 + 0 NA intron (ENSMUSG00000053617.12, intron 5 of 13) protein_coding-intron (ENSMUSG00000053617.12, intron 5 of 14) 64133 ENSMUSG00000053617.12 ENSMUSG00000053617 ENSMUST00000237828 Sh3pxd2a protein_coding Interval_110390 chr3 157698989 157699229 + 0 NA Intergenic Intergenic 27299 ENSMUSG00000106632.1 ENSMUSG00000106632 ENSMUST00000199819 Gm33466 lincRNA Interval_138819 chr6 92183323 92184500 + 0 NA promoter-TSS (ENSMUSG00000014551.8) protein_coding-promoter-TSS (ENSMUSG00000014551.8) 122 ENSMUSG00000014551.8 ENSMUSG00000014551 ENSMUST00000134132 Mrps25 protein_coding Interval_20714 chr10 120449650 120450549 + 0 NA intron (ENSMUSG00000056758.14, intron 3 of 5) protein_coding-intron (ENSMUSG00000056758.14, intron 3 of 4) -1989 ENSMUSG00000076448.1 ENSMUSG00000076448 ENSMUST00000103249 Mir763 miRNA Interval_123084 chr5 29484525 29486257 + 0 NA Intergenic Intergenic -3760 ENSMUSG00000093875.1 ENSMUSG00000093875 ENSMUST00000082612 Gm24538 snRNA Interval_40593 chr12 105903037 105904142 + 0 NA Intergenic Intergenic 3748 ENSMUSG00000113835.1 ENSMUSG00000113835 ENSMUST00000220934 Gm19554 lincRNA Interval_45778 chr13 58023168 58023599 + 0 NA promoter-TSS (ENSMUSG00000077962.1) miRNA-promoter-TSS (ENSMUSG00000077962.1) -183 ENSMUSG00000077962.1 ENSMUSG00000077962 ENSMUST00000104769 Mir874 miRNA Interval_139670 chr6 106590347 106590535 + 0 NA intron (ENSMUSG00000064293.14, intron 4 of 15) protein_coding-intron (ENSMUSG00000064293.14, intron 11 of 15) -65062 ENSMUSG00000064293.14 ENSMUSG00000064293 ENSMUST00000142626 Cntn4 protein_coding Interval_131619 chr5 138847749 138848716 + 0 NA Intergenic Intergenic 28152 ENSMUSG00000094504.3 ENSMUSG00000094504 ENSMUST00000179205 Gm5294 protein_coding Interval_13876 chr10 24158388 24159566 + 0 NA intron (ENSMUSG00000019998.6, intron 2 of 9) protein_coding-intron (ENSMUSG00000019998.6, intron 2 of 9) 9650 ENSMUSG00000019998.6 ENSMUSG00000019998 ENSMUST00000219553 Stx7 protein_coding Interval_25397 chr11 47378986 47379819 + 0 NA exon (ENSMUSG00000020354.15, exon 1 of 8) protein_coding-exon (ENSMUSG00000020354.15, exon 1 of 8) -162030 ENSMUSG00000082792.1 ENSMUSG00000082792 ENSMUST00000121420 Gm12176 processed_pseudogene Interval_1405 chr1 21386417 21387182 + 0 NA TTS (ENSMUSG00000085079.3) protein_coding-TTS (ENSMUSG00000085079.3) 3243 ENSMUSG00000085079.3 ENSMUSG00000085079 ENSMUST00000147615 Khdc1b protein_coding Interval_129904 chr5 123005437 123006413 + 0 NA intron (ENSMUSG00000105311.1, intron 2 of 2) processed_transcript-intron (ENSMUSG00000105311.1, intron 2 of 2) 6949 ENSMUSG00000105311.1 ENSMUSG00000105311 ENSMUST00000172729 Gm44574 processed_transcript Interval_129527 chr5 120718260 120719582 + 0 NA Intergenic Intergenic 16654 ENSMUSG00000032690.16 ENSMUSG00000032690 ENSMUST00000146101 Oas2 protein_coding Interval_46345 chr13 64106991 64108896 + 0 NA promoter-TSS (ENSMUSG00000033114.11) protein_coding-promoter-TSS (ENSMUSG00000033114.11) -18742 ENSMUSG00000033122.14 ENSMUSG00000033122 ENSMUST00000222810 Hsd17b3 protein_coding Interval_36981 chr12 55869574 55869821 + 0 NA TTS (ENSMUSG00000012076.8) protein_coding-TTS (ENSMUSG00000012076.8) 33293 ENSMUSG00000012076.8 ENSMUSG00000012076 ENSMUST00000219575 Brms1l protein_coding Interval_18723 chr10 89697392 89697700 + 0 NA intron (ENSMUSG00000097383.1, intron 2 of 2) bidirectional_promoter_lncRNA-intron (ENSMUSG00000097383.1, intron 2 of 2) 11175 ENSMUSG00000097383.1 ENSMUSG00000097383 ENSMUST00000181598 1500026H17Rik bidirectional_promoter_lncRNA Interval_8633 chr1 145155986 145156727 + 0 NA Intergenic Intergenic 9587 ENSMUSG00000099617.1 ENSMUSG00000099617 ENSMUST00000187574 Gm6550 processed_pseudogene Interval_113533 chr4 55650799 55652388 + 0 NA Intergenic Intergenic 46444 ENSMUSG00000085375.1 ENSMUSG00000085375 ENSMUST00000123620 Gm12506 lincRNA Interval_167022 chr9 64617475 64618109 + 0 NA intron (ENSMUSG00000036466.17, intron 1 of 1) protein_coding-intron (ENSMUSG00000036466.17, intron 5 of 24) 107928 ENSMUSG00000004771.12 ENSMUSG00000004771 ENSMUST00000165083 Rab11a protein_coding Interval_79368 chr18 31316808 31317186 + 0 NA exon (ENSMUSG00000057455.12, exon 1 of 4) protein_coding-exon (ENSMUSG00000057455.12, exon 1 of 4) 33207 ENSMUSG00000117502.1 ENSMUSG00000117502 ENSMUST00000234093 Gm7941 processed_pseudogene Interval_15714 chr10 54349081 54349354 + 0 NA Intergenic Intergenic -37886 ENSMUSG00000094738.1 ENSMUSG00000094738 ENSMUST00000178683 Gm26177 snRNA Interval_141 GL456387.1 3182 4689 + 0 NA NA NA NA NA Interval_9474 chr1 157496522 157497087 + 0 NA Intergenic Intergenic 14917 ENSMUSG00000087093.2 ENSMUSG00000087093 ENSMUST00000135147 Gm15486 antisense Interval_173157 chrX 73659081 73660355 + 0 NA promoter-TSS (ENSMUSG00000002012.13) protein_coding-promoter-TSS (ENSMUSG00000002012.13) -285 ENSMUSG00000002012.13 ENSMUSG00000002012 ENSMUST00000144187 Pnck protein_coding Interval_5124 chr1 85837893 85839665 + 0 NA intron (ENSMUSG00000036707.16, intron 4 of 8) protein_coding-intron (ENSMUSG00000036707.16, intron 5 of 9) -4301 ENSMUSG00000036707.16 ENSMUSG00000036707 ENSMUST00000187623 Cab39 protein_coding Interval_76306 chr17 78932765 78933003 + 0 NA intron (ENSMUSG00000024081.9, intron 2 of 15) protein_coding-intron (ENSMUSG00000024081.9, intron 2 of 15) -6900 ENSMUSG00000024081.9 ENSMUSG00000024081 ENSMUST00000232899 Cebpz protein_coding Interval_46654 chr13 68171389 68172643 + 0 NA Intergenic Intergenic -9278 ENSMUSG00000113342.1 ENSMUSG00000113342 ENSMUST00000221571 AA414992 TEC Interval_101335 chr2 180542481 180543172 + 0 NA exon (ENSMUSG00000027568.9, exon 4 of 4) protein_coding-exon (ENSMUSG00000027568.9, exon 4 of 4) -38478 ENSMUSG00000027569.15 ENSMUSG00000027569 ENSMUST00000149969 Mrgbp protein_coding Interval_113978 chr4 62230722 62231367 + 0 NA promoter-TSS (ENSMUSG00000028389.12) protein_coding-promoter-TSS (ENSMUSG00000028389.12) -22842 ENSMUSG00000028389.12 ENSMUSG00000028389 ENSMUST00000212325 Zfp37 protein_coding Interval_31692 chr11 102280442 102280868 + 0 NA Intergenic Intergenic -4541 ENSMUSG00000034757.15 ENSMUSG00000034757 ENSMUST00000156326 Tmub2 protein_coding Interval_156292 chr8 47048127 47049488 + 0 NA intron (ENSMUSG00000038173.15, intron 2 of 6) protein_coding-intron (ENSMUSG00000038173.15, intron 2 of 7) -10630 ENSMUSG00000086190.1 ENSMUSG00000086190 ENSMUST00000130943 4930579M01Rik antisense Interval_79680 chr18 34467272 34468216 + 0 NA intron (ENSMUSG00000036501.7, intron 3 of 6) protein_coding-intron (ENSMUSG00000036501.7, intron 8 of 20) 30159 ENSMUSG00000036501.7 ENSMUSG00000036501 ENSMUST00000236598 Fam13b protein_coding Interval_96712 chr2 127356199 127356471 + 0 NA intron (ENSMUSG00000050468.12, intron 8 of 8) protein_coding-intron (ENSMUSG00000050468.12, intron 8 of 8) -6873 ENSMUSG00000058620.5 ENSMUSG00000058620 ENSMUST00000071902 Adra2b protein_coding Interval_146532 chr7 46687069 46688256 + 0 NA exon (ENSMUSG00000006763.14, exon 12 of 12) protein_coding-exon (ENSMUSG00000006763.14, exon 12 of 12) -2279 ENSMUSG00000110010.1 ENSMUSG00000110010 ENSMUST00000209629 Gm45629 TEC Interval_64523 chr16 13049286 13049707 + 0 NA Intergenic Intergenic -82895 ENSMUSG00000022545.13 ENSMUSG00000022545 ENSMUST00000156393 Ercc4 protein_coding Interval_171996 chr9 123320283 123320661 + 0 NA Intergenic Intergenic -12503 ENSMUSG00000058492.5 ENSMUSG00000058492 ENSMUST00000072166 Scp2-ps2 transcribed_unprocessed_pseudogene Interval_126646 chr5 91610513 91610721 + 0 NA intron (ENSMUSG00000034981.9, intron 2 of 3) protein_coding-intron (ENSMUSG00000034981.9, intron 2 of 3) 93002 ENSMUSG00000034981.9 ENSMUSG00000034981 ENSMUST00000040576 Parm1 protein_coding Interval_11427 chr1 181893276 181893485 + 0 NA Intergenic Intergenic -40191 ENSMUSG00000056699.7 ENSMUSG00000056699 ENSMUST00000070987 Gm5533 lincRNA Interval_149048 chr7 92660976 92661215 + 0 NA exon (ENSMUSG00000041328.16, exon 5 of 16) protein_coding-exon (ENSMUSG00000041328.16, exon 5 of 16) 8808 ENSMUSG00000041328.16 ENSMUSG00000041328 ENSMUST00000208058 Pcf11 protein_coding Interval_12907 chr10 7919081 7919764 + 0 NA TTS (ENSMUSG00000015755.16) protein_coding-TTS (ENSMUSG00000015755.16) 36471 ENSMUSG00000015755.16 ENSMUSG00000015755 ENSMUST00000130322 Tab2 protein_coding Interval_69047 chr16 90297086 90300504 + 0 NA Intergenic Intergenic -14292 ENSMUSG00000022983.16 ENSMUSG00000022983 ENSMUST00000231776 Scaf4 protein_coding Interval_88690 chr2 9792237 9792514 + 0 NA Intergenic Intergenic 83024 ENSMUSG00000015619.10 ENSMUSG00000015619 ENSMUST00000142305 Gata3 protein_coding Interval_35855 chr12 31260757 31261257 + 0 NA Intergenic Intergenic -1945 ENSMUSG00000065200.1 ENSMUSG00000065200 ENSMUST00000083266 Gm24613 snoRNA Interval_25665 chr11 50565107 50566223 + 0 NA Intergenic Intergenic -36419 ENSMUSG00000036545.9 ENSMUSG00000036545 ENSMUST00000127534 Adamts2 protein_coding Interval_129424 chr5 120094764 120095010 + 0 NA Intergenic Intergenic 30552 ENSMUSG00000064617.1 ENSMUSG00000064617 ENSMUST00000082683 n-R5s176 rRNA Interval_159446 chr8 94787460 94788398 + 0 NA Intergenic Intergenic 15725 ENSMUSG00000031778.13 ENSMUSG00000031778 ENSMUST00000150307 Cx3cl1 protein_coding Interval_150336 chr7 109696821 109697107 + 0 NA intron (ENSMUSG00000031024.13, intron 1 of 3) protein_coding-intron (ENSMUSG00000031024.13, intron 1 of 3) -2561 ENSMUSG00000109499.1 ENSMUSG00000109499 ENSMUST00000207292 Gm44864 antisense Interval_124663 chr5 52942371 52942831 + 0 NA Intergenic Intergenic 16861 ENSMUSG00000077757.1 ENSMUSG00000077757 ENSMUST00000104569 Gm23532 snoRNA Interval_150098 chr7 105818578 105818979 + 0 NA intron (ENSMUSG00000086414.2, intron 4 of 4) transcribed_processed_pseudogene-intron (ENSMUSG00000086414.2, intron 4 of 4) 5028 ENSMUSG00000109685.1 ENSMUSG00000109685 ENSMUST00000210646 Gm45912 TEC Interval_14679 chr10 38896217 38896415 + 0 NA Intergenic Intergenic -31973 ENSMUSG00000111431.1 ENSMUSG00000111431 ENSMUST00000213395 Gm17779 processed_pseudogene Interval_132052 chr5 142498863 142499233 + 0 NA intron (ENSMUSG00000029576.17, intron 5 of 13) protein_coding-intron (ENSMUSG00000029576.17, intron 5 of 14) -11479 ENSMUSG00000029576.17 ENSMUSG00000029576 ENSMUST00000129212 Radil protein_coding Interval_154099 chr8 12677302 12678224 + 0 NA exon (ENSMUSG00000054910.5, exon 2 of 2) processed_transcript-exon (ENSMUSG00000054910.5, exon 2 of 2) 5336 ENSMUSG00000054910.5 ENSMUSG00000054910 ENSMUST00000131064 4931415C17Rik processed_transcript Interval_71226 chr17 21397351 21397784 + 0 NA exon (ENSMUSG00000062743.9, exon 4 of 4) protein_coding-exon (ENSMUSG00000062743.9, exon 4 of 4) -2450 ENSMUSG00000116633.1 ENSMUSG00000116633 ENSMUST00000232365 Gm18519 processed_pseudogene Interval_97105 chr2 131255497 131256462 + 0 NA Intergenic Intergenic -6589 ENSMUSG00000037514.17 ENSMUSG00000037514 ENSMUST00000183349 Pank2 protein_coding Interval_38731 chr12 81689564 81691604 + 0 NA Intergenic Intergenic 29468 ENSMUSG00000113184.1 ENSMUSG00000113184 ENSMUST00000221438 Gm49654 lincRNA Interval_127614 chr5 105792550 105794012 + 0 NA intron (ENSMUSG00000046079.16, intron 1 of 2) protein_coding-intron (ENSMUSG00000046079.16, intron 2 of 2) 4432 ENSMUSG00000067058.7 ENSMUSG00000067058 ENSMUST00000132586 Rps15a-ps5 processed_pseudogene Interval_59465 chr15 53334301 53334984 + 0 NA intron (ENSMUSG00000061731.9, intron 1 of 10) protein_coding-intron (ENSMUSG00000061731.9, intron 1 of 10) -49277 ENSMUSG00000087805.2 ENSMUSG00000087805 ENSMUST00000157180 Gm27926 snRNA Interval_3824 chr1 63280587 63280797 + 0 NA intron (ENSMUSG00000027520.16, intron 3 of 5) protein_coding-intron (ENSMUSG00000027520.16, intron 3 of 6) -7329 ENSMUSG00000092705.1 ENSMUSG00000092705 ENSMUST00000174964 Gm24513 miRNA Interval_32585 chr11 108904077 108904305 + 0 NA Intergenic Intergenic -17145 ENSMUSG00000000142.15 ENSMUSG00000000142 ENSMUST00000139682 Axin2 protein_coding Interval_108363 chr3 125834989 125835212 + 0 NA Intergenic Intergenic 80785 ENSMUSG00000032854.12 ENSMUSG00000032854 ENSMUST00000196481 Ugt8a protein_coding Interval_171799 chr9 121276818 121278687 + 0 NA promoter-TSS (ENSMUSG00000040936.15) protein_coding-promoter-TSS (ENSMUSG00000040936.15) -24 ENSMUSG00000110863.1 ENSMUSG00000110863 ENSMUST00000215259 Gm34655 bidirectional_promoter_lncRNA Interval_67694 chr16 56001539 56002277 + 0 NA intron (ENSMUSG00000022601.11, intron 7 of 10) protein_coding-intron (ENSMUSG00000022601.11, intron 7 of 10) -3284 ENSMUSG00000022601.11 ENSMUSG00000022601 ENSMUST00000184618 Zbtb11 protein_coding Interval_125212 chr5 65390369 65392020 + 0 NA promoter-TSS (ENSMUSG00000029199.11) protein_coding-promoter-TSS (ENSMUSG00000029199.11) -208 ENSMUSG00000047215.14 ENSMUSG00000047215 ENSMUST00000128074 Rpl9 protein_coding Interval_130198 chr5 124875422 124875632 + 0 NA promoter-TSS (ENSMUSG00000079215.8) protein_coding-promoter-TSS (ENSMUSG00000079215.8) 1375 ENSMUSG00000079215.8 ENSMUSG00000079215 ENSMUST00000134473 Zfp664 protein_coding Interval_80471 chr18 42511025 42512163 + 0 NA promoter-TSS (ENSMUSG00000024498.16) protein_coding-promoter-TSS (ENSMUSG00000024498.16) 24506 ENSMUSG00000118058.1 ENSMUSG00000118058 ENSMUST00000237473 Gm3631 processed_pseudogene Interval_123399 chr5 32215682 32215917 + 0 NA Intergenic Intergenic -16909 ENSMUSG00000029134.14 ENSMUSG00000029134 ENSMUST00000202687 Plb1 protein_coding Interval_87596 chr19 53644168 53644528 + 0 NA intron (ENSMUSG00000024974.10, intron 1 of 1) protein_coding-intron (ENSMUSG00000024974.10, intron 28 of 28) 990 ENSMUSG00000024974.10 ENSMUSG00000024974 ENSMUST00000171083 Smc3 protein_coding Interval_167152 chr9 65665564 65666697 + 0 NA Intergenic Intergenic -3582 ENSMUSG00000040652.16 ENSMUSG00000040652 ENSMUST00000128664 Oaz2 protein_coding Interval_128752 chr5 115084660 115085597 + 0 NA TTS (ENSMUSG00000029550.11) protein_coding-TTS (ENSMUSG00000029550.11) 10761 ENSMUSG00000029550.11 ENSMUSG00000029550 ENSMUST00000128678 Sppl3 protein_coding Interval_119440 chr4 137643101 137644315 + 0 NA promoter-TSS (ENSMUSG00000043411.15) protein_coding-promoter-TSS (ENSMUSG00000043411.15) -6593 ENSMUSG00000043411.15 ENSMUSG00000043411 ENSMUST00000125151 Usp48 protein_coding Interval_15866 chr10 58548687 58549361 + 0 NA intron (ENSMUSG00000038010.9, intron 13 of 15) protein_coding-intron (ENSMUSG00000038010.9, intron 13 of 15) -6243 ENSMUSG00000112670.1 ENSMUSG00000112670 ENSMUST00000219887 Gm18042 processed_pseudogene Interval_135787 chr6 47328037 47330157 + 0 NA Intergenic Intergenic 103992 ENSMUSG00000107853.1 ENSMUSG00000107853 ENSMUST00000203098 Gm18584 processed_pseudogene Interval_57686 chr15 15459952 15460151 + 0 NA Intergenic Intergenic -134856 ENSMUSG00000114972.1 ENSMUSG00000114972 ENSMUST00000226279 Gm49119 processed_pseudogene Interval_27951 chr11 71414744 71416079 + 0 NA Intergenic Intergenic 20769 ENSMUSG00000085230.1 ENSMUSG00000085230 ENSMUST00000152249 Gm16013 lincRNA Interval_119454 chr4 137718835 137719934 + 0 NA exon (ENSMUSG00000041351.16, exon 15 of 25) protein_coding-exon (ENSMUSG00000041351.16, exon 15 of 25) -12778 ENSMUSG00000087476.1 ENSMUSG00000087476 ENSMUST00000135358 Rap1gapos antisense Interval_110539 chr4 3743370 3743832 + 0 NA intron (ENSMUSG00000042228.14, intron 4 of 12) protein_coding-intron (ENSMUSG00000042228.14, intron 4 of 12) -22575 ENSMUSG00000083186.1 ENSMUSG00000083186 ENSMUST00000121238 Gm11805 processed_pseudogene Interval_91406 chr2 38597880 38598330 + 0 NA intron (ENSMUSG00000026750.6, intron 6 of 7) protein_coding-intron (ENSMUSG00000026750.6, intron 6 of 7) -24696 ENSMUSG00000082931.1 ENSMUSG00000082931 ENSMUST00000121784 Gm13586 processed_pseudogene Interval_123706 chr5 34633287 34634165 + 0 NA TTS (ENSMUSG00000001082.12) protein_coding-TTS (ENSMUSG00000001082.12) 1799 ENSMUSG00000001082.12 ENSMUSG00000001082 ENSMUST00000124668 Mfsd10 protein_coding Interval_97820 chr2 144263524 144263943 + 0 NA intron (ENSMUSG00000027423.15, intron 2 of 13) protein_coding-intron (ENSMUSG00000027423.15, intron 1 of 12) -2007 ENSMUSG00000065725.1 ENSMUSG00000065725 ENSMUST00000083791 Gm26165 snoRNA Interval_7455 chr1 131497634 131498625 + 0 NA TTS (ENSMUSG00000076287.1) miRNA-TTS (ENSMUSG00000076287.1) 673 ENSMUSG00000076287.1 ENSMUSG00000076287 ENSMUST00000102332 Gm24273 miRNA Interval_21400 chr10 128368285 128370819 + 0 NA promoter-TSS (ENSMUSG00000039914.6) protein_coding-promoter-TSS (ENSMUSG00000039914.6) -555 ENSMUSG00000039914.6 ENSMUSG00000039914 ENSMUST00000220111 Coq10a protein_coding Interval_76879 chr17 84704170 84704570 + 0 NA TTS (ENSMUSG00000024120.12) protein_coding-TTS (ENSMUSG00000024120.12) 21239 ENSMUSG00000024254.15 ENSMUSG00000024254 ENSMUST00000171915 Abcg8 protein_coding Interval_89188 chr2 17942273 17943830 + 0 NA Intergenic Intergenic 53907 ENSMUSG00000062651.4 ENSMUSG00000062651 ENSMUST00000105001 H2al2a protein_coding Interval_75667 chr17 70403475 70404253 + 0 NA intron (ENSMUSG00000003279.17, intron 4 of 8) protein_coding-intron (ENSMUSG00000003279.17, intron 4 of 14) 351718 ENSMUSG00000097282.1 ENSMUSG00000097282 ENSMUST00000181546 5031415H12Rik antisense Interval_82441 chr18 74017281 74018321 + 0 NA promoter-TSS (ENSMUSG00000090263.1) lincRNA-promoter-TSS (ENSMUSG00000090263.1) -106 ENSMUSG00000090263.1 ENSMUSG00000090263 ENSMUST00000159260 D730045A05Rik lincRNA Interval_31206 chr11 98900686 98900875 + 0 NA exon (ENSMUSG00000038013.14, exon 8 of 8) protein_coding-exon (ENSMUSG00000038013.14, exon 8 of 8) 9607 ENSMUSG00000038013.14 ENSMUSG00000038013 ENSMUST00000148439 Wipf2 protein_coding Interval_24477 chr11 33550727 33551726 + 0 NA exon (ENSMUSG00000020159.8, exon 10 of 10) protein_coding-exon (ENSMUSG00000020159.8, exon 10 of 10) 27733 ENSMUSG00000020159.8 ENSMUSG00000020159 ENSMUST00000135350 Gabrp protein_coding Interval_84738 chr19 16047029 16047571 + 0 NA Intergenic Intergenic 21849 ENSMUSG00000117711.1 ENSMUSG00000117711 ENSMUST00000235413 Rpl37-ps1 processed_pseudogene Interval_4630 chr1 75545680 75547167 + 0 NA promoter-TSS (ENSMUSG00000006576.16) protein_coding-promoter-TSS (ENSMUSG00000006576.16) -233 ENSMUSG00000006576.16 ENSMUSG00000006576 ENSMUST00000132110 Slc4a3 protein_coding Interval_114400 chr4 75234336 75235454 + 0 NA Intergenic Intergenic 43410 ENSMUSG00000028398.8 ENSMUSG00000028398 ENSMUST00000030103 Dmac1 protein_coding Interval_50189 chr14 9019765 9020793 + 0 NA Intergenic Intergenic -94099 ENSMUSG00000114464.1 ENSMUSG00000114464 ENSMUST00000225474 Gm18071 processed_pseudogene Interval_90832 chr2 32875667 32877060 + 0 NA promoter-TSS (ENSMUSG00000087496.1) antisense-promoter-TSS (ENSMUSG00000087496.1) -362 ENSMUSG00000087496.1 ENSMUSG00000087496 ENSMUST00000151820 Gm13523 antisense Interval_135267 chr6 37936220 37937323 + 0 NA intron (ENSMUSG00000029833.17, intron 7 of 7) protein_coding-intron (ENSMUSG00000029833.17, intron 7 of 18) 65960 ENSMUSG00000029833.17 ENSMUSG00000029833 ENSMUST00000135387 Trim24 protein_coding Interval_52892 chr14 51883400 51885250 + 0 NA promoter-TSS (ENSMUSG00000004561.14) protein_coding-promoter-TSS (ENSMUSG00000004561.14) -593 ENSMUSG00000004561.14 ENSMUSG00000004561 ENSMUST00000077846 Mettl17 protein_coding Interval_31950 chr11 104025119 104025335 + 0 NA Intergenic Intergenic 45638 ENSMUSG00000062421.13 ENSMUSG00000062421 ENSMUST00000154089 Arf2 protein_coding Interval_36582 chr12 50943466 50944463 + 0 NA Intergenic Intergenic -48493 ENSMUSG00000112154.1 ENSMUSG00000112154 ENSMUST00000220100 Gm48777 processed_pseudogene Interval_111880 chr4 32221167 32221990 + 0 NA Intergenic Intergenic 14430 ENSMUSG00000083564.1 ENSMUSG00000083564 ENSMUST00000118175 Gm11929 processed_pseudogene Interval_77903 chr18 5191467 5192466 + 0 NA Intergenic Intergenic -26235 ENSMUSG00000097888.2 ENSMUSG00000097888 ENSMUST00000180850 Gm26682 lincRNA Interval_93701 chr2 75985081 75985702 + 0 NA Intergenic Intergenic -3424 ENSMUSG00000075271.4 ENSMUSG00000075271 ENSMUST00000099994 Ttc30a1 protein_coding Interval_151273 chr7 120594027 120594816 + 0 NA intron (ENSMUSG00000109113.1, intron 2 of 8) lincRNA-intron (ENSMUSG00000109113.1, intron 2 of 8) 1270 ENSMUSG00000109113.1 ENSMUSG00000109113 ENSMUST00000207884 Gm32916 lincRNA Interval_72970 chr17 33884350 33884605 + 0 NA TTS (ENSMUSG00000079553.11) protein_coding-TTS (ENSMUSG00000079553.11) 2256 ENSMUSG00000098621.1 ENSMUSG00000098621 ENSMUST00000185129 Gm27740 miRNA Interval_105064 chr3 80867159 80867344 + 0 NA intron (ENSMUSG00000028020.16, intron 3 of 7) protein_coding-intron (ENSMUSG00000028020.16, intron 4 of 9) 44838 ENSMUSG00000028020.16 ENSMUSG00000028020 ENSMUST00000132330 Glrb protein_coding Interval_11434 chr1 181921574 181922457 + 0 NA exon (ENSMUSG00000022995.16, exon 7 of 15) protein_coding-exon (ENSMUSG00000022995.16, exon 7 of 15) 31360 ENSMUSG00000103722.1 ENSMUSG00000103722 ENSMUST00000194331 2700078F05Rik TEC Interval_15935 chr10 59453685 59454904 + 0 NA intron (ENSMUSG00000009647.13, intron 6 of 7) protein_coding-intron (ENSMUSG00000009647.13, intron 3 of 4) -23208 ENSMUSG00000009654.4 ENSMUSG00000009654 ENSMUST00000162493 Oit3 protein_coding Interval_38052 chr12 75348740 75349707 + 0 NA intron (ENSMUSG00000046768.13, intron 1 of 3) protein_coding-intron (ENSMUSG00000046768.13, intron 1 of 4) 40342 ENSMUSG00000046768.13 ENSMUSG00000046768 ENSMUST00000172981 Rhoj protein_coding Interval_124748 chr5 53655270 53655481 + 0 NA exon (ENSMUSG00000039191.12, exon 11 of 11) protein_coding-exon (ENSMUSG00000039191.12, exon 11 of 11) 16743 ENSMUSG00000039191.12 ENSMUSG00000039191 ENSMUST00000202092 Rbpj protein_coding Interval_3374 chr1 57558251 57558756 + 0 NA Intergenic Intergenic 5548 ENSMUSG00000101151.1 ENSMUSG00000101151 ENSMUST00000186851 Gm17929 processed_pseudogene Interval_90052 chr2 27545697 27546388 + 0 NA Intergenic Intergenic 5616 ENSMUSG00000085929.1 ENSMUSG00000085929 ENSMUST00000132898 Gm13421 processed_transcript Interval_60854 chr15 77166458 77166807 + 0 NA intron (ENSMUSG00000033565.18, intron 1 of 3) protein_coding-intron (ENSMUSG00000033565.18, intron 2 of 12) 11632 ENSMUSG00000116185.1 ENSMUSG00000116185 ENSMUST00000230993 Gm49411 TEC Interval_23906 chr11 28145600 28145977 + 0 NA Intergenic Intergenic 99753 ENSMUSG00000083201.1 ENSMUSG00000083201 ENSMUST00000119821 Gm12080 processed_pseudogene Interval_115291 chr4 95434343 95435185 + 0 NA Intergenic Intergenic -31974 ENSMUSG00000100129.1 ENSMUSG00000100129 ENSMUST00000187014 Gm29064 lincRNA Interval_38228 chr12 76496202 76496537 + 0 NA Intergenic Intergenic 4014 ENSMUSG00000112167.1 ENSMUSG00000112167 ENSMUST00000218608 Gm47053 processed_pseudogene Interval_29254 chr11 82313263 82313735 + 0 NA Intergenic Intergenic -7809 ENSMUSG00000020702.13 ENSMUSG00000020702 ENSMUST00000021043 Ccl1 protein_coding Interval_143691 chr7 15050433 15050700 + 0 NA Intergenic Intergenic 7238 ENSMUSG00000093770.1 ENSMUSG00000093770 ENSMUST00000176026 Obox3-ps4 unprocessed_pseudogene Interval_47339 chr13 81676574 81677043 + 0 NA intron (ENSMUSG00000035834.11, intron 3 of 3) protein_coding-intron (ENSMUSG00000035834.11, intron 7 of 7) 10477 ENSMUSG00000035834.11 ENSMUSG00000035834 ENSMUST00000160331 Polr3g protein_coding Interval_78419 chr18 12694127 12695264 + 0 NA intron (ENSMUSG00000024424.15, intron 4 of 7) protein_coding-intron (ENSMUSG00000024424.15, intron 4 of 13) -20116 ENSMUSG00000087950.1 ENSMUSG00000087950 ENSMUST00000157325 Mir1948 miRNA Interval_96618 chr2 126561680 126562310 + 0 NA intron (ENSMUSG00000027359.16, intron 2 of 9) protein_coding-intron (ENSMUSG00000027359.16, intron 2 of 9) -2765 ENSMUSG00000027359.16 ENSMUSG00000027359 ENSMUST00000150947 Slc27a2 protein_coding Interval_107426 chr3 107571180 107571646 + 0 NA Intergenic Intergenic -16340 ENSMUSG00000055891.7 ENSMUSG00000055891 ENSMUST00000052853 Ubl4b protein_coding Interval_16847 chr10 69196424 69197106 + 0 NA intron (ENSMUSG00000019944.14, intron 2 of 4) protein_coding-intron (ENSMUSG00000019944.14, intron 2 of 4) 16333 ENSMUSG00000090622.1 ENSMUSG00000090622 ENSMUST00000170048 A930033H14Rik protein_coding Interval_4435 chr1 74139357 74139655 + 0 NA intron (ENSMUSG00000061815.11, intron 9 of 11) protein_coding-intron (ENSMUSG00000061815.11, intron 9 of 11) 13927 ENSMUSG00000061815.11 ENSMUSG00000061815 ENSMUST00000127134 Rufy4 protein_coding Interval_164563 chr9 38744636 38745507 + 0 NA Intergenic Intergenic -7228 ENSMUSG00000061039.5 ENSMUSG00000061039 ENSMUST00000074740 Olfr920 protein_coding Interval_67948 chr16 60435324 60435622 + 0 NA intron (ENSMUSG00000055540.15, intron 2 of 2) protein_coding-intron (ENSMUSG00000055540.15, intron 2 of 17) -37151 ENSMUSG00000087636.1 ENSMUSG00000087636 ENSMUST00000131499 Gm4660 processed_pseudogene Interval_98908 chr2 155946146 155947113 + 0 NA Intergenic Intergenic -1262 ENSMUSG00000038259.4 ENSMUSG00000038259 ENSMUST00000040162 Gdf5 protein_coding Interval_40625 chr12 106091475 106092212 + 0 NA Intergenic Intergenic 7128 ENSMUSG00000113390.1 ENSMUSG00000113390 ENSMUST00000221493 Gm32635 lincRNA Interval_169551 chr9 99083788 99084302 + 0 NA intron (ENSMUSG00000032462.14, intron 8 of 23) protein_coding-intron (ENSMUSG00000032462.14, intron 8 of 23) -48330 ENSMUSG00000044860.9 ENSMUSG00000044860 ENSMUST00000076730 Gm1123 protein_coding Interval_164285 chr9 35016548 35018240 + 0 NA intron (ENSMUSG00000032036.15, intron 10 of 13) protein_coding-intron (ENSMUSG00000032036.15, intron 11 of 16) 55237 ENSMUSG00000032038.7 ENSMUSG00000032038 ENSMUST00000215463 St3gal4 protein_coding Interval_83740 chr19 4309832 4310043 + 0 NA Intergenic Intergenic 18474 ENSMUSG00000054611.17 ENSMUSG00000054611 ENSMUST00000176495 Kdm2a protein_coding Interval_40353 chr12 104208977 104210074 + 0 NA Intergenic Intergenic -5019 ENSMUSG00000066363.12 ENSMUSG00000066363 ENSMUST00000101080 Serpina3f protein_coding Interval_7626 chr1 132594637 132596388 + 0 NA exon (ENSMUSG00000026442.14, exon 23 of 27) protein_coding-exon (ENSMUSG00000026442.14, exon 23 of 27) 29000 ENSMUSG00000026442.14 ENSMUSG00000026442 ENSMUST00000189219 Nfasc protein_coding Interval_495 chr1 6410109 6410588 + 0 NA Intergenic Intergenic -27242 ENSMUSG00000102706.1 ENSMUSG00000102706 ENSMUST00000192950 Gm7417 processed_pseudogene Interval_127650 chr5 106216379 106217031 + 0 NA TTS (ENSMUSG00000105600.1) processed_pseudogene-TTS (ENSMUSG00000105600.1) 1054 ENSMUSG00000105600.1 ENSMUSG00000105600 ENSMUST00000196433 Gm5987 processed_pseudogene Interval_144362 chr7 24676522 24676779 + 0 NA promoter-TSS (ENSMUSG00000062773.6) protein_coding-promoter-TSS (ENSMUSG00000062773.6) 25 ENSMUSG00000062773.6 ENSMUSG00000062773 ENSMUST00000206390 Tex101 protein_coding Interval_70094 chr17 5285802 5286033 + 0 NA intron (ENSMUSG00000069729.14, intron 7 of 19) protein_coding-intron (ENSMUSG00000069729.14, intron 7 of 18) -102846 ENSMUSG00000101133.1 ENSMUSG00000101133 ENSMUST00000190732 Gm29050 antisense Interval_166583 chr9 61077064 61077419 + 0 NA Intergenic Intergenic -21572 ENSMUSG00000111180.1 ENSMUSG00000111180 ENSMUST00000216861 Gm39348 lincRNA Interval_58076 chr15 27647825 27648073 + 0 NA Intergenic Intergenic 11438 ENSMUSG00000115578.1 ENSMUSG00000115578 ENSMUST00000227140 Gm46506 processed_pseudogene Interval_153002 chr7 140787214 140788334 + 0 NA promoter-TSS (ENSMUSG00000025480.5) protein_coding-promoter-TSS (ENSMUSG00000025480.5) 63 ENSMUSG00000025480.5 ENSMUSG00000025480 ENSMUST00000211616 Syce1 protein_coding Interval_109168 chr3 137474228 137474787 + 0 NA Intergenic Intergenic 78115 ENSMUSG00000055138.10 ENSMUSG00000055138 ENSMUST00000198629 Gm4861 lincRNA Interval_33356 chr11 116103967 116104693 + 0 NA Intergenic Intergenic 2753 ENSMUSG00000020773.11 ENSMUSG00000020773 ENSMUST00000133039 Trim47 protein_coding Interval_46805 chr13 70879600 70880531 + 0 NA Intergenic Intergenic -2883 ENSMUSG00000021600.5 ENSMUSG00000021600 ENSMUST00000225672 8030423J24Rik lincRNA Interval_65989 chr16 30744042 30744760 + 0 NA Intergenic Intergenic 48854 ENSMUSG00000116570.1 ENSMUSG00000116570 ENSMUST00000231445 Gm49754 lincRNA Interval_40023 chr12 100533559 100534824 + 0 NA Intergenic Intergenic 39785 ENSMUSG00000113687.1 ENSMUSG00000113687 ENSMUST00000223531 Gm49703 TEC Interval_139641 chr6 104462451 104462718 + 0 NA Intergenic Intergenic -30664 ENSMUSG00000030092.14 ENSMUSG00000030092 ENSMUST00000162872 Cntn6 protein_coding Interval_12075 chr1 189567449 189567984 + 0 NA Intergenic Intergenic 72518 ENSMUSG00000103087.1 ENSMUSG00000103087 ENSMUST00000192679 Gm38122 TEC Interval_14713 chr10 39250870 39251283 + 0 NA intron (ENSMUSG00000111008.1, intron 3 of 4) lincRNA-intron (ENSMUSG00000111008.1, intron 3 of 4) 6030 ENSMUSG00000111008.1 ENSMUSG00000111008 ENSMUST00000213973 Gm31562 lincRNA Interval_5718 chr1 91199882 91200322 + 0 NA intron (ENSMUSG00000034353.14, intron 2 of 2) protein_coding-intron (ENSMUSG00000034353.14, intron 2 of 2) 20060 ENSMUSG00000034353.14 ENSMUSG00000034353 ENSMUST00000097648 Ramp1 protein_coding Interval_34302 chr12 3238190 3238759 + 0 NA TTS (ENSMUSG00000079179.9) antisense-TTS (ENSMUSG00000079179.9) 2559 ENSMUSG00000079179.9 ENSMUSG00000079179 ENSMUST00000049684 Rab10os antisense Interval_115086 chr4 89446895 89447447 + 0 NA intron (ENSMUSG00000086035.1, intron 1 of 3) processed_transcript-intron (ENSMUSG00000086035.1, intron 1 of 3) 1952 ENSMUSG00000098669.1 ENSMUSG00000098669 ENSMUST00000183666 Gm27580 misc_RNA Interval_74378 chr17 49750989 49751683 + 0 NA intron (ENSMUSG00000023999.14, intron 1 of 2) protein_coding-intron (ENSMUSG00000023999.14, intron 10 of 11) 70489 ENSMUSG00000090012.1 ENSMUSG00000090012 ENSMUST00000159971 Gm16555 antisense Interval_12779 chr10 5289103 5289959 + 0 NA exon (ENSMUSG00000096054.3, exon 55 of 146) protein_coding-exon (ENSMUSG00000096054.3, exon 55 of 146) -67642 ENSMUSG00000094906.1 ENSMUSG00000094906 ENSMUST00000104408 Gm23573 snRNA Interval_67731 chr16 56541006 56541288 + 0 NA intron (ENSMUSG00000035258.15, intron 2 of 35) protein_coding-intron (ENSMUSG00000035258.15, intron 2 of 39) 63247 ENSMUSG00000035258.15 ENSMUSG00000035258 ENSMUST00000096012 Abi3bp protein_coding Interval_168842 chr9 87954579 87955698 + 0 NA Intergenic Intergenic 66411 ENSMUSG00000077553.1 ENSMUSG00000077553 ENSMUST00000104365 Gm23176 snoRNA Interval_63424 chr15 100983536 100984365 + 0 NA exon (ENSMUSG00000023033.14, exon 12 of 27) protein_coding-exon (ENSMUSG00000023033.14, exon 12 of 27) 13828 ENSMUSG00000023033.14 ENSMUSG00000023033 ENSMUST00000201246 Scn8a protein_coding Interval_6314 chr1 105803186 105803466 + 0 NA intron (ENSMUSG00000026321.7, intron 1 of 3) protein_coding-intron (ENSMUSG00000026321.7, intron 1 of 9) 22576 ENSMUSG00000026321.7 ENSMUSG00000026321 ENSMUST00000187658 Tnfrsf11a protein_coding Interval_151463 chr7 122787672 122788425 + 0 NA Intergenic Intergenic -49915 ENSMUSG00000108529.1 ENSMUSG00000108529 ENSMUST00000205860 Gm29759 processed_pseudogene Interval_147677 chr7 71770309 71770538 + 0 NA Intergenic Intergenic 52586 ENSMUSG00000108982.1 ENSMUSG00000108982 ENSMUST00000208796 Gm17988 processed_pseudogene Interval_64008 chr16 5210025 5210316 + 0 NA Intergenic Intergenic 5704 ENSMUSG00000098675.1 ENSMUSG00000098675 ENSMUST00000183396 Mir6364 miRNA Interval_54496 chr14 70241171 70241962 + 0 NA intron (ENSMUSG00000022092.11, intron 6 of 14) protein_coding-intron (ENSMUSG00000022092.11, intron 6 of 13) -3997 ENSMUSG00000115645.1 ENSMUSG00000115645 ENSMUST00000227159 Gm49288 processed_pseudogene Interval_56389 chr14 118368565 118370027 + 0 NA intron (ENSMUSG00000099911.1, intron 3 of 5) lincRNA-intron (ENSMUSG00000096997.1, intron 1 of 1) 3418 ENSMUSG00000099911.1 ENSMUSG00000099911 ENSMUST00000186060 1700044C05Rik lincRNA Interval_77992 chr18 6489738 6491327 + 0 NA TTS (ENSMUSG00000084514.1) miRNA-TTS (ENSMUSG00000084514.1) 114 ENSMUSG00000084514.1 ENSMUSG00000084514 ENSMUST00000122565 Mir1893 miRNA Interval_172518 chrX 23670199 23670417 + 0 NA Intergenic Intergenic -22851 ENSMUSG00000036769.14 ENSMUSG00000036769 ENSMUST00000135445 Wdr44 protein_coding Interval_60454 chr15 73850031 73850771 + 0 NA Intergenic Intergenic 15840 ENSMUSG00000086361.1 ENSMUSG00000086361 ENSMUST00000154520 Gm6569 protein_coding Interval_63519 chr15 101702421 101702678 + 0 NA Intergenic Intergenic -7725 ENSMUSG00000105682.1 ENSMUSG00000105682 ENSMUST00000198689 Gm44323 miRNA Interval_52634 chr14 48149173 48150170 + 0 NA intron (ENSMUSG00000021846.9, intron 1 of 2) protein_coding-intron (ENSMUSG00000021846.9, intron 1 of 5) 15447 ENSMUSG00000115686.1 ENSMUSG00000115686 ENSMUST00000228432 Gm49310 TEC Interval_13748 chr10 21789045 21789558 + 0 NA Intergenic Intergenic 45434 ENSMUSG00000099749.1 ENSMUSG00000099749 ENSMUST00000189792 Gm29323 lincRNA Interval_60836 chr15 77051977 77053047 + 0 NA promoter-TSS (ENSMUSG00000033576.12) protein_coding-promoter-TSS (ENSMUSG00000033576.12) 7234 ENSMUSG00000033576.12 ENSMUSG00000033576 ENSMUST00000139304 Apol6 protein_coding Interval_84723 chr19 15949482 15950854 + 0 NA Intergenic Intergenic -2831 ENSMUSG00000024640.9 ENSMUSG00000024640 ENSMUST00000162233 Psat1 protein_coding Interval_86702 chr19 42763794 42765061 + 0 NA promoter-TSS (ENSMUSG00000025188.15) protein_coding-promoter-TSS (ENSMUSG00000025188.15) -11652 ENSMUSG00000060224.4 ENSMUSG00000060224 ENSMUST00000238158 Pyroxd2 protein_coding Interval_171073 chr9 114389421 114390820 + 0 NA intron (ENSMUSG00000032431.6, intron 1 of 6) protein_coding-intron (ENSMUSG00000032431.6, intron 1 of 6) -10985 ENSMUSG00000079260.3 ENSMUSG00000079260 ENSMUST00000111820 Tmppe protein_coding Interval_172109 chrX 7665283 7666252 + 0 NA promoter-TSS (ENSMUSG00000031145.15) protein_coding-promoter-TSS (ENSMUSG00000031145.15) -331 ENSMUSG00000031145.15 ENSMUSG00000031145 ENSMUST00000153994 Prickle3 protein_coding Interval_160580 chr8 110831863 110832940 + 0 NA intron (ENSMUSG00000033732.10, intron 10 of 12) protein_coding-intron (ENSMUSG00000033732.10, intron 10 of 25) 6215 ENSMUSG00000080396.1 ENSMUSG00000080396 ENSMUST00000116746 Snord111 snoRNA Interval_144265 chr7 24120327 24120710 + 0 NA intron (ENSMUSG00000052675.11, intron 1 of 3) protein_coding-intron (ENSMUSG00000052675.11, intron 2 of 4) 2149 ENSMUSG00000052675.11 ENSMUSG00000052675 ENSMUST00000215113 Zfp112 protein_coding Interval_162637 chr9 7085971 7086603 + 0 NA intron (ENSMUSG00000047193.16, intron 10 of 11) protein_coding-intron (ENSMUSG00000047193.16, intron 51 of 88) 31301 ENSMUSG00000047193.16 ENSMUSG00000047193 ENSMUST00000139115 Dync2h1 protein_coding Interval_22721 chr11 13946319 13947724 + 0 NA Intergenic Intergenic -215058 ENSMUSG00000081631.1 ENSMUSG00000081631 ENSMUST00000121451 Gm12005 processed_pseudogene Interval_47843 chr13 93696691 93697076 + 0 NA intron (ENSMUSG00000042102.7, intron 5 of 15) protein_coding-intron (ENSMUSG00000042102.7, intron 5 of 15) -14656 ENSMUSG00000042102.7 ENSMUSG00000042102 ENSMUST00000126196 Dmgdh protein_coding Interval_151179 chr7 119015893 119016637 + 0 NA Intergenic Intergenic -31621 ENSMUSG00000008734.9 ENSMUSG00000008734 ENSMUST00000207614 Gprc5b protein_coding Interval_101940 chr3 12540270 12540807 + 0 NA Intergenic Intergenic -90722 ENSMUSG00000104177.1 ENSMUSG00000104177 ENSMUST00000194635 Gm2429 processed_pseudogene Interval_24113 chr11 30452076 30452343 + 0 NA intron (ENSMUSG00000040919.13, intron 2 of 4) protein_coding-intron (ENSMUSG00000040919.13, intron 2 of 4) 19618 ENSMUSG00000040919.13 ENSMUSG00000040919 ENSMUST00000152718 4930505A04Rik protein_coding Interval_55622 chr14 96312933 96313195 + 0 NA intron (ENSMUSG00000022076.10, intron 4 of 10) protein_coding-intron (ENSMUSG00000022076.10, intron 4 of 10) 81111 ENSMUSG00000083933.1 ENSMUSG00000083933 ENSMUST00000117827 Gm15515 processed_pseudogene Interval_86804 chr19 43975823 43977039 + 0 NA intron (ENSMUSG00000025196.4, intron 2 of 8) protein_coding-intron (ENSMUSG00000025196.4, intron 2 of 8) -7738 ENSMUSG00000025196.4 ENSMUSG00000025196 ENSMUST00000131882 Cpn1 protein_coding Interval_79268 chr18 28863356 28863560 + 0 NA intron (ENSMUSG00000117473.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000117473.1, intron 1 of 2) -8758 ENSMUSG00000117473.1 ENSMUSG00000117473 ENSMUST00000234160 Gm33948 lincRNA Interval_90298 chr2 29649761 29650737 + 0 NA intron (ENSMUSG00000039844.20, intron 1 of 23) protein_coding-intron (ENSMUSG00000039844.20, intron 1 of 25) 6434 ENSMUSG00000039844.20 ENSMUSG00000039844 ENSMUST00000123953 Rapgef1 protein_coding Interval_46733 chr13 69703114 69704415 + 0 NA exon (ENSMUSG00000052981.6, exon 2 of 2) protein_coding-exon (ENSMUSG00000052981.6, exon 2 of 2) 5953 ENSMUSG00000113324.1 ENSMUSG00000113324 ENSMUST00000220876 Gm48819 lincRNA Interval_30120 chr11 89370514 89370798 + 0 NA Intergenic Intergenic 67933 ENSMUSG00000085798.1 ENSMUSG00000085798 ENSMUST00000140754 Gm2018 lincRNA Interval_112722 chr4 44410084 44410285 + 0 NA Intergenic Intergenic 2411 ENSMUSG00000077587.1 ENSMUSG00000077587 ENSMUST00000104399 Gm24376 snoRNA Interval_18421 chr10 85661751 85662235 + 0 NA Intergenic Intergenic 16790 ENSMUSG00000020042.15 ENSMUSG00000020042 ENSMUST00000145433 Btbd11 protein_coding Interval_30410 chr11 94194451 94195197 + 0 NA Intergenic Intergenic -16630 ENSMUSG00000037573.5 ENSMUSG00000037573 ENSMUST00000041589 Tob1 protein_coding Interval_17679 chr10 79106045 79107139 + 0 NA Intergenic Intergenic -9067 ENSMUSG00000060301.6 ENSMUSG00000060301 ENSMUST00000219729 2610008E11Rik protein_coding Interval_75639 chr17 69624408 69624758 + 0 NA Intergenic Intergenic -29806 ENSMUSG00000088581.1 ENSMUSG00000088581 ENSMUST00000157956 Gm22967 misc_RNA Interval_69024 chr16 90185913 90186602 + 0 NA Intergenic Intergenic -11891 ENSMUSG00000116829.1 ENSMUSG00000116829 ENSMUST00000231225 Gm49704 processed_pseudogene Interval_142504 chr6 142914804 142915225 + 0 NA intron (ENSMUSG00000030283.7, intron 1 of 4) protein_coding-intron (ENSMUSG00000030283.7, intron 1 of 4) 49127 ENSMUSG00000030283.7 ENSMUSG00000030283 ENSMUST00000147058 St8sia1 protein_coding Interval_43552 chr13 33084768 33085328 + 0 NA intron (ENSMUSG00000051029.8, intron 2 of 2) protein_coding-intron (ENSMUSG00000051029.8, intron 1 of 6) 6473 ENSMUSG00000051029.8 ENSMUSG00000051029 ENSMUST00000016951 Serpinb1b protein_coding Interval_80090 chr18 37473481 37473754 + 0 NA promoter-TSS (ENSMUSG00000047033.2) protein_coding-promoter-TSS (ENSMUSG00000047033.2) 77 ENSMUSG00000047033.2 ENSMUSG00000047033 ENSMUST00000050034 Pcdhb15 protein_coding Interval_74225 chr17 47568913 47569255 + 0 NA intron (ENSMUSG00000034165.16, intron 1 of 6) protein_coding-intron (ENSMUSG00000034165.16, intron 1 of 6) -27240 ENSMUSG00000034165.16 ENSMUSG00000034165 ENSMUST00000183206 Ccnd3 protein_coding Interval_47824 chr13 93553147 93553353 + 0 NA Intergenic Intergenic -53513 ENSMUSG00000021690.10 ENSMUSG00000021690 ENSMUST00000220513 Jmy protein_coding Interval_108942 chr3 133513568 133514186 + 0 NA exon (ENSMUSG00000040943.12, exon 3 of 3) protein_coding-exon (ENSMUSG00000040943.12, exon 3 of 3) -31220 ENSMUSG00000105085.1 ENSMUSG00000105085 ENSMUST00000199268 Gm42567 antisense Interval_54079 chr14 65069210 65069904 + 0 NA intron (ENSMUSG00000021978.9, intron 3 of 6) protein_coding-intron (ENSMUSG00000021978.9, intron 3 of 6) 28548 ENSMUSG00000021978.9 ENSMUSG00000021978 ENSMUST00000223989 Extl3 protein_coding Interval_27187 chr11 63926964 63927328 + 0 NA Intergenic Intergenic -4856 ENSMUSG00000070407.5 ENSMUSG00000070407 ENSMUST00000094103 Hs3st3b1 protein_coding Interval_112449 chr4 41341032 41341571 + 0 NA Intergenic Intergenic 4650 ENSMUSG00000088528.1 ENSMUSG00000088528 ENSMUST00000157903 Gm26084 snRNA Interval_170832 chr9 111040766 111041534 + 0 NA TTS (ENSMUSG00000032496.7) protein_coding-TTS (ENSMUSG00000032496.7) 12043 ENSMUSG00000104654.1 ENSMUSG00000104654 ENSMUST00000197851 Gm43814 TEC Interval_138910 chr6 93410980 93411289 + 0 NA Intergenic Intergenic 44423 ENSMUSG00000107848.1 ENSMUSG00000107848 ENSMUST00000203106 Gm44181 TEC Interval_104689 chr3 69468065 69468659 + 0 NA intron (ENSMUSG00000027784.10, intron 1 of 3) protein_coding-intron (ENSMUSG00000027784.10, intron 1 of 3) -28851 ENSMUSG00000027784.10 ENSMUSG00000027784 ENSMUST00000128637 Ppm1l protein_coding Interval_156562 chr8 51944072 51944381 + 0 NA Intergenic Intergenic 64663 ENSMUSG00000109897.1 ENSMUSG00000109897 ENSMUST00000211573 Gm6458 processed_pseudogene Interval_30157 chr11 89988343 89989278 + 0 NA intron (ENSMUSG00000020553.8, intron 2 of 5) protein_coding-intron (ENSMUSG00000020553.8, intron 2 of 5) 14084 ENSMUSG00000020553.8 ENSMUSG00000020553 ENSMUST00000020864 Pctp protein_coding Interval_38115 chr12 75724895 75727922 + 0 NA intron (ENSMUSG00000021054.6, intron 1 of 1) protein_coding-intron (ENSMUSG00000021054.6, intron 1 of 2) 9288 ENSMUSG00000021054.6 ENSMUSG00000021054 ENSMUST00000220285 Sgpp1 protein_coding Interval_12880 chr10 7189846 7190140 + 0 NA intron (ENSMUSG00000015202.13, intron 1 of 12) protein_coding-intron (ENSMUSG00000015202.13, intron 1 of 12) -54487 ENSMUSG00000015202.13 ENSMUSG00000015202 ENSMUST00000015346 Cnksr3 protein_coding Interval_56752 chr14 121859896 121860172 + 0 NA Intergenic Intergenic 18470 ENSMUSG00000102112.1 ENSMUSG00000102112 ENSMUST00000185880 1810041H14Rik antisense Interval_122307 chr5 21124978 21125412 + 0 NA exon (ENSMUSG00000106116.1, exon 1 of 1) processed_pseudogene-exon (ENSMUSG00000106116.1, exon 1 of 1) 1178 ENSMUSG00000106116.1 ENSMUSG00000106116 ENSMUST00000199036 Gm18830 processed_pseudogene Interval_159860 chr8 104410631 104411505 + 0 NA Intergenic Intergenic -15261 ENSMUSG00000096188.1 ENSMUSG00000096188 ENSMUST00000179802 Cmtm4 protein_coding Interval_134349 chr6 26015540 26015813 + 0 NA Intergenic Intergenic -38595 ENSMUSG00000107127.1 ENSMUSG00000107127 ENSMUST00000202067 Gm6719 processed_pseudogene Interval_130323 chr5 125709307 125709621 + 0 NA intron (ENSMUSG00000070498.3, intron 4 of 8) protein_coding-intron (ENSMUSG00000070498.3, intron 4 of 8) 139276 ENSMUSG00000091970.3 ENSMUSG00000091970 ENSMUST00000164138 Gm4868 processed_pseudogene Interval_86016 chr19 34946518 34946762 + 0 NA intron (ENSMUSG00000024795.11, intron 9 of 23) protein_coding-intron (ENSMUSG00000024795.11, intron 17 of 31) -18756 ENSMUSG00000089151.1 ENSMUSG00000089151 ENSMUST00000158526 Mir1950 miRNA Interval_64808 chr16 16044253 16044478 + 0 NA intron (ENSMUSG00000041974.10, intron 7 of 16) protein_coding-intron (ENSMUSG00000041974.10, intron 7 of 19) -33356 ENSMUSG00000077350.1 ENSMUSG00000077350 ENSMUST00000104162 n-R5s31 rRNA Interval_98416 chr2 152197155 152198440 + 0 NA Intergenic Intergenic -12115 ENSMUSG00000081087.1 ENSMUSG00000081087 ENSMUST00000117430 Rps15a-ps7 processed_pseudogene Interval_168342 chr9 78964481 78964731 + 0 NA Intergenic Intergenic -20970 ENSMUSG00000111309.1 ENSMUSG00000111309 ENSMUST00000217004 Gm18863 processed_pseudogene Interval_147701 chr7 72238395 72238948 + 0 NA intron (ENSMUSG00000032776.9, intron 4 of 22) protein_coding-intron (ENSMUSG00000032776.9, intron 4 of 22) -9311 ENSMUSG00000032776.9 ENSMUSG00000032776 ENSMUST00000206755 Mctp2 protein_coding Interval_137102 chr6 67359885 67360102 + 0 NA intron (ENSMUSG00000018341.12, intron 3 of 15) protein_coding-intron (ENSMUSG00000018341.12, intron 3 of 15) -20299 ENSMUSG00000018341.12 ENSMUSG00000018341 ENSMUST00000018485 Il12rb2 protein_coding Interval_89 GL456221.1 98595 98883 + 0 NA NA NA NA NA Interval_25363 chr11 46684638 46684859 + 0 NA intron (ENSMUSG00000040413.15, intron 3 of 8) protein_coding-intron (ENSMUSG00000040413.15, intron 3 of 8) 5609 ENSMUSG00000040413.15 ENSMUSG00000040413 ENSMUST00000125008 Timd2 protein_coding Interval_162553 chr9 4250570 4251510 + 0 NA Intergenic Intergenic 20197 ENSMUSG00000080511.1 ENSMUSG00000080511 ENSMUST00000116861 Gm22195 miRNA Interval_8585 chr1 143549074 143550458 + 0 NA Intergenic Intergenic -90898 ENSMUSG00000033849.3 ENSMUSG00000033849 ENSMUST00000038252 B3galt2 protein_coding Interval_95486 chr2 110054568 110054842 + 0 NA intron (ENSMUSG00000027160.16, intron 2 of 2) protein_coding-intron (ENSMUSG00000027160.16, intron 2 of 2) -4229 ENSMUSG00000086186.1 ENSMUSG00000086186 ENSMUST00000123633 Ccdc34os antisense Interval_92632 chr2 61739991 61740218 + 0 NA intron (ENSMUSG00000026914.15, intron 3 of 6) protein_coding-intron (ENSMUSG00000026914.15, intron 3 of 11) 22365 ENSMUSG00000092660.1 ENSMUSG00000092660 ENSMUST00000174919 Gm22403 miRNA Interval_164041 chr9 31092413 31092894 + 0 NA intron (ENSMUSG00000031995.9, intron 16 of 18) protein_coding-intron (ENSMUSG00000031995.9, intron 16 of 18) -1549 ENSMUSG00000081343.1 ENSMUSG00000081343 ENSMUST00000119589 Gm16071 processed_pseudogene Interval_127777 chr5 107714020 107714448 + 0 NA Intergenic Intergenic -10754 ENSMUSG00000106333.1 ENSMUSG00000106333 ENSMUST00000198537 4930428O21Rik lincRNA Interval_95235 chr2 105075892 105076113 + 0 NA TTS (ENSMUSG00000074987.9) antisense-TTS (ENSMUSG00000074987.9) -16016 ENSMUSG00000079175.1 ENSMUSG00000079175 ENSMUST00000111107 Gm11060 protein_coding Interval_86844 chr19 44314268 44315279 + 0 NA intron (ENSMUSG00000117957.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000117957.1, intron 1 of 1) 1001 ENSMUSG00000117957.1 ENSMUSG00000117957 ENSMUST00000238052 Gm50334 lincRNA Interval_126210 chr5 82417905 82418147 + 0 NA Intergenic Intergenic 81175 ENSMUSG00000106926.1 ENSMUSG00000106926 ENSMUST00000200912 Rpl7-ps7 processed_pseudogene Interval_166459 chr9 59659760 59659983 + 0 NA intron (ENSMUSG00000032294.17, intron 2 of 2) protein_coding-intron (ENSMUSG00000032294.17, intron 1 of 10) 3212 ENSMUSG00000032294.17 ENSMUSG00000032294 ENSMUST00000213220 Pkm protein_coding Interval_172504 chrX 21900295 21901377 + 0 NA TTS (ENSMUSG00000065074.1) snRNA-TTS (ENSMUSG00000065074.1) 1002 ENSMUSG00000065074.1 ENSMUSG00000065074 ENSMUST00000083140 Gm24535 snRNA Interval_924 chr1 13206522 13206904 + 0 NA intron (ENSMUSG00000005886.14, intron 4 of 12) protein_coding-intron (ENSMUSG00000005886.14, intron 4 of 22) -26999 ENSMUSG00000103506.1 ENSMUSG00000103506 ENSMUST00000195493 Gm38376 TEC Interval_132509 chr5 145638780 145639445 + 0 NA Intergenic Intergenic -5119 ENSMUSG00000106040.1 ENSMUSG00000106040 ENSMUST00000196626 Cyp3a63-ps unprocessed_pseudogene Interval_14497 chr10 34359586 34360034 + 0 NA intron (ENSMUSG00000039480.14, intron 5 of 10) protein_coding-intron (ENSMUSG00000039480.14, intron 6 of 11) -30171 ENSMUSG00000039462.4 ENSMUSG00000039462 ENSMUST00000105511 Col10a1 protein_coding Interval_14429 chr10 33548464 33548863 + 0 NA intron (ENSMUSG00000019785.14, intron 2 of 4) protein_coding-intron (ENSMUSG00000019785.14, intron 3 of 5) 35166 ENSMUSG00000112248.1 ENSMUSG00000112248 ENSMUST00000219677 Gm47910 TEC Interval_142508 chr6 142963621 142965645 + 0 NA promoter-TSS (ENSMUSG00000030283.7) protein_coding-promoter-TSS (ENSMUSG00000030283.7) -492 ENSMUSG00000030283.7 ENSMUSG00000030283 ENSMUST00000147058 St8sia1 protein_coding Interval_61662 chr15 83264941 83265970 + 0 NA Intergenic Intergenic -7358 ENSMUSG00000116416.1 ENSMUSG00000116416 ENSMUST00000230161 Gm32886 processed_pseudogene Interval_6593 chr1 117924764 117924962 + 0 NA Intergenic Intergenic -3152 ENSMUSG00000101415.1 ENSMUSG00000101415 ENSMUST00000191265 Gm28168 protein_coding Interval_35702 chr12 28358807 28359318 + 0 NA Intergenic Intergenic 8799 ENSMUSG00000077792.1 ENSMUSG00000077792 ENSMUST00000104604 Gm25564 snoRNA Interval_2611 chr1 42229446 42229910 + 0 NA promoter-TSS (ENSMUSG00000053640.2) lincRNA-promoter-TSS (ENSMUSG00000053640.2) -49 ENSMUSG00000053640.2 ENSMUSG00000053640 ENSMUST00000188087 Gm9915 lincRNA Interval_104596 chr3 68618938 68619579 + 0 NA TTS (ENSMUSG00000027777.15) protein_coding-TTS (ENSMUSG00000027777.15) -71550 ENSMUSG00000084617.1 ENSMUSG00000084617 ENSMUST00000122668 Gm22073 snRNA Interval_135408 chr6 39151381 39151646 + 0 NA intron (ENSMUSG00000042599.8, intron 2 of 10) protein_coding-intron (ENSMUSG00000042599.8, intron 11 of 19) 3169 ENSMUSG00000042599.8 ENSMUSG00000042599 ENSMUST00000127036 Kdm7a protein_coding Interval_59367 chr15 51938812 51939101 + 0 NA Intergenic Intergenic 41869 ENSMUSG00000115616.1 ENSMUSG00000115616 ENSMUST00000226818 Gm48923 lincRNA Interval_22950 chr11 17900487 17901363 + 0 NA Intergenic Intergenic 52950 ENSMUSG00000016984.7 ENSMUSG00000016984 ENSMUST00000076661 Etaa1 protein_coding Interval_79851 chr18 35579844 35581071 + 0 NA exon (ENSMUSG00000037236.16, exon 1 of 1) protein_coding-exon (ENSMUSG00000037236.16, exon 1 of 1) 5550 ENSMUSG00000102496.1 ENSMUSG00000102496 ENSMUST00000193225 Gm36989 TEC Interval_65127 chr16 19996592 19998043 + 0 NA Intergenic Intergenic -30998 ENSMUSG00000043008.9 ENSMUSG00000043008 ENSMUST00000165530 Klhl6 protein_coding Interval_156074 chr8 43542533 43542935 + 0 NA Intergenic Intergenic -14628 ENSMUSG00000063900.5 ENSMUSG00000063900 ENSMUST00000080135 Adam26b protein_coding Interval_33463 chr11 116676564 116677276 + 0 NA TTS (ENSMUSG00000110170.1) protein_coding-TTS (ENSMUSG00000110170.1) 2322 ENSMUSG00000065094.1 ENSMUSG00000065094 ENSMUST00000083160 Snord1a snoRNA Interval_9064 chr1 153360584 153362939 + 0 NA Intergenic Intergenic 52472 ENSMUSG00000073538.10 ENSMUSG00000073538 ENSMUST00000188717 E330020D12Rik processed_transcript Interval_50468 chr14 13786665 13786909 + 0 NA Intergenic Intergenic 5273 ENSMUSG00000114480.1 ENSMUSG00000114480 ENSMUST00000225631 Gm3637 processed_pseudogene Interval_94824 chr2 95358257 95358552 + 0 NA Intergenic Intergenic -35838 ENSMUSG00000084906.1 ENSMUSG00000084906 ENSMUST00000148637 Gm13794 lincRNA Interval_51176 chr14 24475604 24476418 + 0 NA intron (ENSMUSG00000025280.8, intron 3 of 5) protein_coding-intron (ENSMUSG00000025280.8, intron 9 of 30) 3414 ENSMUSG00000025280.8 ENSMUSG00000025280 ENSMUST00000225014 Polr3a protein_coding Interval_77896 chr18 5124327 5125049 + 0 NA Intergenic Intergenic 41043 ENSMUSG00000097888.2 ENSMUSG00000097888 ENSMUST00000180850 Gm26682 lincRNA Interval_36663 chr12 51844670 51845622 + 0 NA Intergenic Intergenic -4525 ENSMUSG00000112746.1 ENSMUSG00000112746 ENSMUST00000218295 Gm19309 processed_pseudogene Interval_23395 chr11 22199428 22200087 + 0 NA intron (ENSMUSG00000042302.14, intron 5 of 24) protein_coding-intron (ENSMUSG00000042302.14, intron 4 of 23) 87038 ENSMUSG00000042302.14 ENSMUSG00000042302 ENSMUST00000137594 Ehbp1 protein_coding Interval_5976 chr1 93672568 93672937 + 0 NA Intergenic Intergenic -12950 ENSMUSG00000026278.14 ENSMUSG00000026278 ENSMUST00000185685 Bok protein_coding Interval_71535 chr17 24398832 24399031 + 0 NA intron (ENSMUSG00000024130.16, intron 22 of 24) protein_coding-intron (ENSMUSG00000024130.16, intron 22 of 32) 15476 ENSMUSG00000073437.10 ENSMUSG00000073437 ENSMUST00000180579 D330041H03Rik processed_transcript Interval_130512 chr5 128498668 128499936 + 0 NA Intergenic Intergenic 18332 ENSMUSG00000104980.1 ENSMUSG00000104980 ENSMUST00000199120 4930573I07Rik lincRNA Interval_69273 chr16 91835907 91837788 + 0 NA intron (ENSMUSG00000022957.20, intron 16 of 38) protein_coding-intron (ENSMUSG00000022957.20, intron 16 of 28) -67216 ENSMUSG00000022957.20 ENSMUSG00000022957 ENSMUST00000137575 Itsn1 protein_coding Interval_142818 chr6 146138521 146138813 + 0 NA intron (ENSMUSG00000030287.15, intron 2 of 2) protein_coding-intron (ENSMUSG00000030287.15, intron 55 of 56) 93812 ENSMUSG00000030287.15 ENSMUSG00000030287 ENSMUST00000111673 Itpr2 protein_coding Interval_70816 chr17 14960240 14961333 + 0 NA intron (ENSMUSG00000023883.13, intron 1 of 7) protein_coding-intron (ENSMUSG00000023883.13, intron 1 of 11) -8080 ENSMUSG00000023883.13 ENSMUSG00000023883 ENSMUST00000167805 Phf10 protein_coding Interval_65484 chr16 22645193 22645952 + 0 NA intron (ENSMUSG00000022861.17, intron 1 of 5) protein_coding-intron (ENSMUSG00000022861.17, intron 1 of 23) 11617 ENSMUSG00000022861.17 ENSMUSG00000022861 ENSMUST00000231249 Dgkg protein_coding Interval_49850 chr13 117180640 117181695 + 0 NA Intergenic Intergenic -27369 ENSMUSG00000021728.8 ENSMUSG00000021728 ENSMUST00000224455 Emb protein_coding Interval_174599 chrX 159626390 159628301 + 0 NA promoter-TSS (ENSMUSG00000040990.17) protein_coding-promoter-TSS (ENSMUSG00000040990.17) 38880 ENSMUSG00000083906.1 ENSMUSG00000083906 ENSMUST00000119345 Gm15186 processed_pseudogene Interval_156797 chr8 60466877 60467518 + 0 NA intron (ENSMUSG00000070023.5, intron 2 of 2) protein_coding-intron (ENSMUSG00000070023.5, intron 2 of 2) 36001 ENSMUSG00000070023.5 ENSMUSG00000070023 ENSMUST00000093494 Gm10283 protein_coding Interval_93982 chr2 80488507 80488807 + 0 NA Intergenic Intergenic -10573 ENSMUSG00000082494.1 ENSMUSG00000082494 ENSMUST00000119857 Gm13687 processed_pseudogene Interval_21929 chr11 5261016 5262244 + 0 NA promoter-TSS (ENSMUSG00000020393.16) protein_coding-promoter-TSS (ENSMUSG00000020393.16) 9780 ENSMUSG00000064632.1 ENSMUSG00000064632 ENSMUST00000082698 Gm25142 snRNA Interval_138935 chr6 93640036 93640273 + 0 NA Intergenic Intergenic 10071 ENSMUSG00000107739.1 ENSMUSG00000107739 ENSMUST00000203479 Gm7812 processed_pseudogene Interval_154495 chr8 18664626 18665340 + 0 NA intron (ENSMUSG00000087300.1, intron 2 of 3) protein_coding-intron (ENSMUSG00000039842.15, intron 9 of 13) -7994 ENSMUSG00000090334.1 ENSMUSG00000090334 ENSMUST00000164712 Gm17149 processed_pseudogene Interval_98813 chr2 155222101 155222974 + 0 NA intron (ENSMUSG00000027598.16, intron 25 of 25) protein_coding-intron (ENSMUSG00000027598.16, intron 24 of 24) -14071 ENSMUSG00000047459.14 ENSMUSG00000047459 ENSMUST00000135831 Dynlrb1 protein_coding Interval_114823 chr4 85891285 85892363 + 0 NA intron (ENSMUSG00000066113.16, intron 2 of 3) protein_coding-intron (ENSMUSG00000066113.16, intron 2 of 3) -18087 ENSMUSG00000088122.2 ENSMUSG00000088122 ENSMUST00000157497 Gm26069 misc_RNA Interval_61953 chr15 85458946 85459610 + 0 NA intron (ENSMUSG00000016541.10, intron 10 of 11) protein_coding-intron (ENSMUSG00000016541.10, intron 10 of 11) 43949 ENSMUSG00000096607.1 ENSMUSG00000096607 ENSMUST00000178942 7530416G11Rik protein_coding Interval_90804 chr2 32693729 32694877 + 0 NA promoter-TSS (ENSMUSG00000009566.12) protein_coding-promoter-TSS (ENSMUSG00000009566.12) -6466 ENSMUSG00000009566.12 ENSMUSG00000009566 ENSMUST00000143743 Fpgs protein_coding Interval_155058 chr8 26023908 26024948 + 0 NA exon (ENSMUSG00000037234.17, exon 22 of 22) protein_coding-exon (ENSMUSG00000037234.17, exon 22 of 22) 1018 ENSMUSG00000110183.1 ENSMUSG00000110183 ENSMUST00000209647 Gm45411 antisense Interval_154812 chr8 23605280 23606302 + 0 NA Intergenic Intergenic -63870 ENSMUSG00000037492.16 ENSMUSG00000037492 ENSMUST00000146774 Zmat4 protein_coding Interval_122285 chr5 20941123 20941749 + 0 NA intron (ENSMUSG00000039968.9, intron 1 of 6) protein_coding-intron (ENSMUSG00000039968.9, intron 1 of 7) -9553 ENSMUSG00000101013.1 ENSMUSG00000101013 ENSMUST00000190567 A630072M18Rik antisense Interval_134388 chr6 28132103 28132293 + 0 NA exon (ENSMUSG00000024211.15, exon 1 of 1) protein_coding-exon (ENSMUSG00000024211.15, exon 1 of 1) 2187 ENSMUSG00000024211.15 ENSMUSG00000024211 ENSMUST00000202861 Grm8 protein_coding Interval_124123 chr5 38499894 38500142 + 0 NA intron (ENSMUSG00000005107.13, intron 2 of 13) protein_coding-intron (ENSMUSG00000005107.13, intron 1 of 10) -7445 ENSMUSG00000089646.1 ENSMUSG00000089646 ENSMUST00000162135 Gm15796 processed_pseudogene Interval_47179 chr13 77173251 77173620 + 0 NA intron (ENSMUSG00000071252.6, intron 1 of 2) protein_coding-intron (ENSMUSG00000071252.6, intron 1 of 19) 4057 ENSMUSG00000114256.1 ENSMUSG00000114256 ENSMUST00000225012 Gm29844 processed_pseudogene Interval_88517 chr2 5786881 5787150 + 0 NA Intergenic Intergenic 36104 ENSMUSG00000039128.13 ENSMUSG00000039128 ENSMUST00000150876 Cdc123 protein_coding Interval_145322 chr7 33525395 33525641 + 0 NA Intergenic Intergenic -1858 ENSMUSG00000095487.3 ENSMUSG00000095487 ENSMUST00000170232 Scgb1b21 transcribed_unprocessed_pseudogene Interval_83537 chr18 88953344 88954175 + 0 NA Intergenic Intergenic 15613 ENSMUSG00000117777.1 ENSMUSG00000117777 ENSMUST00000235800 Gm50267 processed_pseudogene Interval_74220 chr17 47528782 47529077 + 0 NA intron (ENSMUSG00000034165.16, intron 1 of 6) protein_coding-intron (ENSMUSG00000034165.16, intron 1 of 6) -26657 ENSMUSG00000023980.7 ENSMUSG00000023980 ENSMUST00000233675 Taf8 protein_coding Interval_153842 chr8 9566448 9566654 + 0 NA intron (ENSMUSG00000079157.4, intron 3 of 3) protein_coding-intron (ENSMUSG00000079157.4, intron 1 of 2) 1698 ENSMUSG00000064618.1 ENSMUSG00000064618 ENSMUST00000082684 n-R5s95 rRNA Interval_128343 chr5 112640594 112641310 + 0 NA exon (ENSMUSG00000105735.1, exon 1 of 1) TEC-exon (ENSMUSG00000105735.1, exon 1 of 1) 617 ENSMUSG00000105735.1 ENSMUSG00000105735 ENSMUST00000195895 4933415J04Rik TEC Interval_72419 chr17 29711343 29711725 + 0 NA intron (ENSMUSG00000024018.18, intron 1 of 1) protein_coding-intron (ENSMUSG00000024018.18, intron 1 of 4) 5474 ENSMUSG00000024018.18 ENSMUSG00000024018 ENSMUST00000174437 Ccdc167 protein_coding Interval_100254 chr2 167989574 167990230 + 0 NA intron (ENSMUSG00000074577.9, intron 1 of 1) protein_coding-intron (ENSMUSG00000074577.9, intron 12 of 21) 1445 ENSMUSG00000074577.9 ENSMUSG00000074577 ENSMUST00000142702 Ripor3 protein_coding Interval_72651 chr17 31310836 31311498 + 0 NA TTS (ENSMUSG00000024036.16) protein_coding-TTS (ENSMUSG00000024036.16) -14478 ENSMUSG00000118295.1 ENSMUSG00000118295 ENSMUST00000236752 Gm8437 transcribed_processed_pseudogene Interval_36719 chr12 52488790 52489104 + 0 NA Intergenic Intergenic -8338 ENSMUSG00000111982.1 ENSMUSG00000111982 ENSMUST00000219885 Gm35135 lincRNA Interval_141277 chr6 126783573 126784542 + 0 NA Intergenic Intergenic 26587 ENSMUSG00000118420.1 ENSMUSG00000118420 ENSMUST00000238440 Gm29788 transcribed_unitary_pseudogene Interval_91400 chr2 38555446 38556937 + 0 NA intron (ENSMUSG00000026749.11, intron 2 of 9) protein_coding-intron (ENSMUSG00000026749.11, intron 2 of 9) 10163 ENSMUSG00000107535.1 ENSMUSG00000107535 ENSMUST00000203964 Gm44183 TEC Interval_86306 chr19 38534116 38536329 + 0 NA intron (ENSMUSG00000024998.17, intron 2 of 32) protein_coding-intron (ENSMUSG00000024998.17, intron 1 of 31) -62020 ENSMUSG00000088940.1 ENSMUSG00000088940 ENSMUST00000158315 Gm24930 misc_RNA Interval_112243 chr4 38004103 38004362 + 0 NA Intergenic Intergenic -24613 ENSMUSG00000082899.1 ENSMUSG00000082899 ENSMUST00000119607 Gm12379 processed_pseudogene Interval_154004 chr8 11814996 11815631 + 0 NA intron (ENSMUSG00000031511.16, intron 12 of 17) protein_coding-intron (ENSMUSG00000031511.16, intron 15 of 17) 17859 ENSMUSG00000031511.16 ENSMUSG00000031511 ENSMUST00000151225 Arhgef7 protein_coding Interval_109391 chr3 141588377 141588573 + 0 NA intron (ENSMUSG00000059921.15, intron 1 of 15) protein_coding-intron (ENSMUSG00000059921.15, intron 1 of 16) 94425 ENSMUSG00000089924.1 ENSMUSG00000089924 ENSMUST00000160604 Gm15689 antisense Interval_150971 chr7 117018931 117019214 + 0 NA Intergenic Intergenic -66377 ENSMUSG00000064971.1 ENSMUSG00000064971 ENSMUST00000083037 Gm26054 snRNA Interval_89382 chr2 20258942 20259264 + 0 NA intron (ENSMUSG00000036617.17, intron 2 of 7) protein_coding-intron (ENSMUSG00000036617.17, intron 2 of 7) -21416 ENSMUSG00000065253.1 ENSMUSG00000065253 ENSMUST00000083319 Gm23970 snRNA Interval_66347 chr16 33303043 33304187 + 0 NA Intergenic Intergenic 52173 ENSMUSG00000022808.5 ENSMUSG00000022808 ENSMUST00000231242 Snx4 protein_coding Interval_167676 chr9 71808745 71809882 + 0 NA Intergenic Intergenic 18224 ENSMUSG00000099220.1 ENSMUSG00000099220 ENSMUST00000183453 Gm27220 processed_pseudogene Interval_15646 chr10 52806260 52806825 + 0 NA intron (ENSMUSG00000038602.7, intron 1 of 7) protein_coding-intron (ENSMUSG00000038602.7, intron 1 of 7) 5049 ENSMUSG00000112257.1 ENSMUSG00000112257 ENSMUST00000218509 Gm47623 TEC Interval_45996 chr13 59869955 59870622 + 0 NA Intergenic Intergenic -3354 ENSMUSG00000114669.1 ENSMUSG00000114669 ENSMUST00000225895 Gm48384 lincRNA Interval_84325 chr19 10128991 10130796 + 0 NA Intergenic Intergenic 46268 ENSMUSG00000117700.1 ENSMUSG00000117700 ENSMUST00000235345 Gm50359 processed_pseudogene Interval_48872 chr13 104195276 104195907 + 0 NA intron (ENSMUSG00000021712.15, intron 6 of 9) protein_coding-intron (ENSMUSG00000021712.15, intron 7 of 10) 16752 ENSMUSG00000021712.15 ENSMUSG00000021712 ENSMUST00000069174 Trim23 protein_coding Interval_56527 chr14 120033445 120034035 + 0 NA intron (ENSMUSG00000044819.5, intron 1 of 3) protein_coding-intron (ENSMUSG00000044819.5, intron 1 of 3) 8695 ENSMUSG00000044819.5 ENSMUSG00000044819 ENSMUST00000058213 Oxgr1 protein_coding Interval_16706 chr10 67115785 67116012 + 0 NA intron (ENSMUSG00000037876.17, intron 1 of 9) protein_coding-intron (ENSMUSG00000037876.17, intron 1 of 1) -69850 ENSMUSG00000037876.17 ENSMUSG00000037876 ENSMUST00000173236 Jmjd1c protein_coding Interval_147505 chr7 67816377 67817116 + 0 NA Intergenic Intergenic -2504 ENSMUSG00000109464.1 ENSMUSG00000109464 ENSMUST00000208898 Gm34350 lincRNA Interval_97977 chr2 146335534 146336759 + 0 NA intron (ENSMUSG00000037110.20, intron 35 of 41) protein_coding-intron (ENSMUSG00000037110.20, intron 34 of 40) 30599 ENSMUSG00000042938.8 ENSMUSG00000042938 ENSMUST00000122417 Gm14117 processed_pseudogene Interval_85698 chr19 29744951 29745289 + 0 NA intron (ENSMUSG00000046138.15, intron 2 of 6) protein_coding-intron (ENSMUSG00000046138.15, intron 3 of 7) 47186 ENSMUSG00000024806.4 ENSMUSG00000024806 ENSMUST00000235954 Mlana protein_coding Interval_67392 chr16 48285272 48285769 + 0 NA intron (ENSMUSG00000058550.15, intron 1 of 1) protein_coding-intron (ENSMUSG00000058550.15, intron 1 of 5) 1787 ENSMUSG00000058550.15 ENSMUSG00000058550 ENSMUST00000050705 Dppa4 protein_coding Interval_81573 chr18 61767725 61768207 + 0 NA intron (ENSMUSG00000033032.15, intron 1 of 15) protein_coding-intron (ENSMUSG00000033032.15, intron 1 of 18) 18645 ENSMUSG00000033032.15 ENSMUSG00000033032 ENSMUST00000147278 Afap1l1 protein_coding Interval_67657 chr16 55703946 55704181 + 0 NA Intergenic Intergenic -35855 ENSMUSG00000116969.1 ENSMUSG00000116969 ENSMUST00000232350 Gm19771 processed_pseudogene Interval_108100 chr3 121499913 121500688 + 0 NA intron (ENSMUSG00000039865.8, intron 9 of 14) protein_coding-intron (ENSMUSG00000039865.8, intron 9 of 14) 26807 ENSMUSG00000039865.8 ENSMUSG00000039865 ENSMUST00000199422 Slc44a3 protein_coding Interval_44731 chr13 47944964 47945309 + 0 NA Intergenic Intergenic 34701 ENSMUSG00000114959.1 ENSMUSG00000114959 ENSMUST00000223677 G630093K05Rik lincRNA Interval_132829 chr5 148175678 148176847 + 0 NA intron (ENSMUSG00000029651.16, intron 2 of 3) protein_coding-intron (ENSMUSG00000029651.16, intron 4 of 14) 8115 ENSMUSG00000066554.6 ENSMUSG00000066554 ENSMUST00000150411 Gm10167 processed_pseudogene Interval_49397 chr13 111703922 111704574 + 0 NA intron (ENSMUSG00000032727.14, intron 3 of 7) protein_coding-intron (ENSMUSG00000032727.14, intron 4 of 12) 17915 ENSMUSG00000032727.14 ENSMUSG00000032727 ENSMUST00000232398 Mier3 protein_coding Interval_56841 chr14 122373884 122374759 + 0 NA intron (ENSMUSG00000025545.10, intron 3 of 7) protein_coding-intron (ENSMUSG00000025545.10, intron 3 of 7) 13839 ENSMUSG00000095311.1 ENSMUSG00000095311 ENSMUST00000175481 Gm25464 snRNA Interval_79665 chr18 34348640 34350074 + 0 NA TTS (ENSMUSG00000005873.6) protein_coding-TTS (ENSMUSG00000005873.6) 18181 ENSMUSG00000014504.16 ENSMUSG00000014504 ENSMUST00000142010 Srp19 protein_coding Interval_167477 chr9 69741445 69741638 + 0 NA Intergenic Intergenic 19399 ENSMUSG00000059246.4 ENSMUSG00000059246 ENSMUST00000071281 Foxb1 protein_coding Interval_155133 chr8 26915007 26915209 + 0 NA Intergenic Intergenic -32413 ENSMUSG00000100335.2 ENSMUSG00000100335 ENSMUST00000210263 2310008N11Rik lincRNA Interval_47859 chr13 93906469 93907166 + 0 NA intron (ENSMUSG00000042082.7, intron 6 of 7) protein_coding-intron (ENSMUSG00000042082.7, intron 6 of 7) 16494 ENSMUSG00000093106.1 ENSMUSG00000093106 ENSMUST00000175365 Gm25534 miRNA Interval_68172 chr16 66754471 66755061 + 0 NA intron (ENSMUSG00000064115.13, intron 6 of 9) protein_coding-intron (ENSMUSG00000064115.13, intron 7 of 9) 97648 ENSMUSG00000092599.1 ENSMUSG00000092599 ENSMUST00000174502 1700010K23Rik antisense Interval_56772 chr14 121983484 121983710 + 0 NA intron (ENSMUSG00000041765.6, intron 3 of 4) protein_coding-intron (ENSMUSG00000041765.6, intron 6 of 8) -18492 ENSMUSG00000051212.8 ENSMUSG00000051212 ENSMUST00000227267 Gpr183 protein_coding Interval_153790 chr8 8619574 8621358 + 0 NA TTS (ENSMUSG00000001300.16) protein_coding-TTS (ENSMUSG00000001300.16) 8202 ENSMUSG00000109436.1 ENSMUSG00000109436 ENSMUST00000208426 Gm45075 lincRNA Interval_98286 chr2 150810039 150810243 + 0 NA intron (ENSMUSG00000033059.7, intron 4 of 6) protein_coding-intron (ENSMUSG00000033059.7, intron 4 of 19) -5181 ENSMUSG00000033059.7 ENSMUSG00000033059 ENSMUST00000135717 Pygb protein_coding Interval_70702 chr17 13676371 13676922 + 0 NA intron (ENSMUSG00000085705.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000117063.1, intron 1 of 4) 1270 ENSMUSG00000077349.1 ENSMUSG00000077349 ENSMUST00000104161 Gm24867 snRNA Interval_79341 chr18 30736443 30737576 + 0 NA Intergenic Intergenic -128119 ENSMUSG00000117526.1 ENSMUSG00000117526 ENSMUST00000235078 Gm41780 processed_pseudogene Interval_32327 chr11 106980242 106980735 + 0 NA Intergenic Intergenic -7398 ENSMUSG00000086481.1 ENSMUSG00000086481 ENSMUST00000150366 Gm11707 lincRNA Interval_85551 chr19 28453103 28453379 + 0 NA intron (ENSMUSG00000052942.13, intron 4 of 10) protein_coding-intron (ENSMUSG00000052942.13, intron 3 of 9) 130053 ENSMUSG00000089952.1 ENSMUSG00000089952 ENSMUST00000162380 4933413C19Rik sense_intronic Interval_113553 chr4 56547873 56548828 + 0 NA Intergenic Intergenic 130685 ENSMUSG00000077663.1 ENSMUSG00000077663 ENSMUST00000104475 Gm26144 snoRNA Interval_108128 chr3 121741237 121741560 + 0 NA Intergenic Intergenic 11851 ENSMUSG00000028128.13 ENSMUSG00000028128 ENSMUST00000199997 F3 protein_coding Interval_32563 chr11 108612967 108613592 + 0 NA intron (ENSMUSG00000020728.17, intron 2 of 2) protein_coding-intron (ENSMUSG00000020728.17, intron 21 of 27) 8052 ENSMUSG00000020728.17 ENSMUSG00000020728 ENSMUST00000132978 Cep112 protein_coding Interval_137740 chr6 81959729 81960652 + 0 NA TTS (ENSMUSG00000035125.10) protein_coding-TTS (ENSMUSG00000035125.10) 5451 ENSMUSG00000030045.10 ENSMUSG00000030045 ENSMUST00000148025 Mrpl19 protein_coding Interval_106714 chr3 99363897 99365011 + 0 NA Intergenic Intergenic 99371 ENSMUSG00000081183.1 ENSMUSG00000081183 ENSMUST00000117572 Gm12449 processed_pseudogene Interval_8974 chr1 152837154 152839193 + 0 NA TTS (ENSMUSG00000042772.15) protein_coding-TTS (ENSMUSG00000042772.15) 10747 ENSMUSG00000042772.15 ENSMUSG00000042772 ENSMUST00000188937 Smg7 protein_coding Interval_102799 chr3 31138263 31139278 + 0 NA Intergenic Intergenic -11150 ENSMUSG00000037625.7 ENSMUSG00000037625 ENSMUST00000046174 Cldn11 protein_coding Interval_110401 chr3 157791472 157792250 + 0 NA Intergenic Intergenic 25934 ENSMUSG00000106419.1 ENSMUSG00000106419 ENSMUST00000198658 Gm5550 processed_pseudogene Interval_142609 chr6 144250635 144252092 + 0 NA intron (ENSMUSG00000041540.16, intron 4 of 6) protein_coding-intron (ENSMUSG00000041540.16, intron 4 of 13) -41795 ENSMUSG00000041540.16 ENSMUSG00000041540 ENSMUST00000150087 Sox5 protein_coding Interval_18536 chr10 87071399 87071844 + 0 NA intron (ENSMUSG00000047129.11, intron 1 of 4) protein_coding-intron (ENSMUSG00000047129.11, intron 1 of 5) 71324 ENSMUSG00000089666.1 ENSMUSG00000089666 ENSMUST00000160532 Gm16269 processed_pseudogene Interval_147042 chr7 59245532 59245788 + 0 NA exon (ENSMUSG00000109536.1, exon 1 of 1) TEC-exon (ENSMUSG00000109536.1, exon 1 of 1) 9128 ENSMUSG00000109536.1 ENSMUSG00000109536 ENSMUST00000208498 9330162G02Rik TEC Interval_12724 chr10 4502041 4503120 + 0 NA intron (ENSMUSG00000019767.12, intron 1 of 10) protein_coding-intron (ENSMUSG00000019767.12, intron 1 of 10) 18346 ENSMUSG00000065371.1 ENSMUSG00000065371 ENSMUST00000083437 Gm22739 snRNA Interval_119866 chr4 140586170 140586717 + 0 NA intron (ENSMUSG00000040964.16, intron 7 of 26) protein_coding-intron (ENSMUSG00000040964.16, intron 8 of 27) 30622 ENSMUSG00000040964.16 ENSMUSG00000040964 ENSMUST00000154979 Arhgef10l protein_coding Interval_14221 chr10 29106934 29107581 + 0 NA Intergenic Intergenic -36802 ENSMUSG00000038916.7 ENSMUSG00000038916 ENSMUST00000214863 Soga3 protein_coding Interval_46667 chr13 68553269 68554198 + 0 NA Intergenic Intergenic 28371 ENSMUSG00000034617.7 ENSMUSG00000034617 ENSMUST00000221800 Mtrr protein_coding Interval_119269 chr4 136568863 136569057 + 0 NA promoter-TSS (ENSMUSG00000036940.15) protein_coding-promoter-TSS (ENSMUSG00000036940.15) 15700 ENSMUSG00000082711.1 ENSMUSG00000082711 ENSMUST00000118562 Gm12987 processed_pseudogene Interval_58218 chr15 31027367 31027984 + 0 NA exon (ENSMUSG00000022240.10, exon 23 of 23) protein_coding-exon (ENSMUSG00000022240.10, exon 23 of 23) 1279 ENSMUSG00000022240.10 ENSMUSG00000022240 ENSMUST00000228827 Ctnnd2 protein_coding Interval_6822 chr1 119888130 119888594 + 0 NA Intergenic Intergenic -9099 ENSMUSG00000100636.1 ENSMUSG00000100636 ENSMUST00000190750 Gm3551 processed_pseudogene Interval_144045 chr7 19172741 19173260 + 0 NA Intergenic Intergenic -6873 ENSMUSG00000030406.7 ENSMUSG00000030406 ENSMUST00000206137 Gipr protein_coding Interval_142123 chr6 137430944 137431481 + 0 NA promoter-TSS (ENSMUSG00000107759.1) sense_intronic-promoter-TSS (ENSMUSG00000107759.1) -93 ENSMUSG00000107759.1 ENSMUSG00000107759 ENSMUST00000204925 Gm44258 sense_intronic Interval_152646 chr7 135680233 135680561 + 0 NA intron (ENSMUSG00000041836.10, intron 19 of 20) protein_coding-intron (ENSMUSG00000041836.10, intron 19 of 20) -28114 ENSMUSG00000097471.8 ENSMUSG00000097471 ENSMUST00000210953 5830432E09Rik antisense Interval_135167 chr6 37143094 37143552 + 0 NA intron (ENSMUSG00000038665.15, intron 2 of 32) protein_coding-intron (ENSMUSG00000038665.15, intron 2 of 32) 156861 ENSMUSG00000038665.15 ENSMUSG00000038665 ENSMUST00000136457 Dgki protein_coding Interval_43864 chr13 37702520 37703243 + 0 NA intron (ENSMUSG00000114732.1, intron 2 of 4) lincRNA-intron (ENSMUSG00000114732.1, intron 1 of 2) -4723 ENSMUSG00000114259.1 ENSMUSG00000114259 ENSMUST00000224828 Gm49351 processed_pseudogene Interval_75088 chr17 63186432 63186853 + 0 NA intron (ENSMUSG00000023965.13, intron 4 of 5) protein_coding-intron (ENSMUSG00000023965.13, intron 7 of 8) -16096 ENSMUSG00000088853.1 ENSMUSG00000088853 ENSMUST00000158228 Gm24730 snoRNA Interval_93726 chr2 76248077 76248769 + 0 NA intron (ENSMUSG00000075270.11, intron 2 of 19) protein_coding-intron (ENSMUSG00000075270.11, intron 2 of 19) -33029 ENSMUSG00000075270.11 ENSMUSG00000075270 ENSMUST00000144892 Pde11a protein_coding Interval_98103 chr2 148073917 148074288 + 0 NA Intergenic Intergenic -2263 ENSMUSG00000083750.1 ENSMUSG00000083750 ENSMUST00000122234 Gm14108 processed_pseudogene Interval_137143 chr6 68102093 68102428 + 0 NA TTS (ENSMUSG00000106331.1) processed_pseudogene-TTS (ENSMUSG00000106331.1) 1206 ENSMUSG00000106331.1 ENSMUSG00000106331 ENSMUST00000197416 Gm5309 processed_pseudogene Interval_154055 chr8 12345785 12346396 + 0 NA Intergenic Intergenic -10063 ENSMUSG00000089234.1 ENSMUSG00000089234 ENSMUST00000158609 Gm22207 misc_RNA Interval_167627 chr9 71320266 71320985 + 0 NA Intergenic Intergenic -41440 ENSMUSG00000111181.1 ENSMUSG00000111181 ENSMUST00000214975 Gm48124 processed_pseudogene Interval_7878 chr1 134332035 134332318 + 0 NA intron (ENSMUSG00000026458.13, intron 1 of 27) protein_coding-intron (ENSMUSG00000026458.13, intron 1 of 28) -27368 ENSMUSG00000026458.13 ENSMUSG00000026458 ENSMUST00000186553 Ppfia4 protein_coding Interval_108397 chr3 126609473 126610297 + 0 NA intron (ENSMUSG00000053819.16, intron 2 of 20) protein_coding-intron (ENSMUSG00000053819.16, intron 2 of 18) 9856 ENSMUSG00000106475.1 ENSMUSG00000106475 ENSMUST00000197897 Gm43011 TEC Interval_52084 chr14 35477428 35477673 + 0 NA intron (ENSMUSG00000041078.7, intron 12 of 15) protein_coding-intron (ENSMUSG00000041078.7, intron 12 of 15) 27202 ENSMUSG00000041078.7 ENSMUSG00000041078 ENSMUST00000173307 Grid1 protein_coding Interval_38203 chr12 76351977 76352220 + 0 NA intron (ENSMUSG00000056459.14, intron 2 of 2) protein_coding-intron (ENSMUSG00000056459.14, intron 2 of 2) -6717 ENSMUSG00000112096.1 ENSMUSG00000112096 ENSMUST00000220077 A430103D13Rik TEC Interval_143674 chr7 14320932 14321320 + 0 NA Intergenic Intergenic 12431 ENSMUSG00000099216.1 ENSMUSG00000099216 ENSMUST00000184356 Obox8 protein_coding Interval_113875 chr4 59509596 59510121 + 0 NA intron (ENSMUSG00000028382.15, intron 1 of 3) protein_coding-intron (ENSMUSG00000028382.15, intron 4 of 13) -22889 ENSMUSG00000080831.1 ENSMUSG00000080831 ENSMUST00000119529 Gm12529 processed_pseudogene Interval_141629 chr6 131466822 131467166 + 0 NA Intergenic Intergenic -19406 ENSMUSG00000095577.2 ENSMUSG00000095577 ENSMUST00000159229 Gm6619 protein_coding Interval_144342 chr7 24584995 24587968 + 0 NA intron (ENSMUSG00000066721.3, intron 3 of 3) protein_coding-intron (ENSMUSG00000066721.3, intron 3 of 3) -1062 ENSMUSG00000064254.6 ENSMUSG00000064254 ENSMUST00000077191 Ethe1 protein_coding Interval_113734 chr4 57904104 57904973 + 0 NA Intergenic Intergenic 11759 ENSMUSG00000052117.5 ENSMUSG00000052117 ENSMUST00000063816 D630039A03Rik protein_coding Interval_107011 chr3 102946925 102947483 + 0 NA intron (ENSMUSG00000048938.12, intron 7 of 9) protein_coding-intron (ENSMUSG00000048938.12, intron 8 of 10) 4909 ENSMUSG00000065708.1 ENSMUSG00000065708 ENSMUST00000083774 Gm22826 snRNA Interval_18878 chr10 91977494 91978129 + 0 NA Intergenic Intergenic 88982 ENSMUSG00000111657.1 ENSMUSG00000111657 ENSMUST00000217529 Gm31592 lincRNA Interval_49545 chr13 112840484 112841235 + 0 NA intron (ENSMUSG00000021759.14, intron 2 of 5) protein_coding-intron (ENSMUSG00000021759.14, intron 2 of 5) 39996 ENSMUSG00000021759.14 ENSMUSG00000021759 ENSMUST00000070951 Plpp1 protein_coding Interval_2252 chr1 37370925 37371375 + 0 NA intron (ENSMUSG00000026113.17, intron 1 of 15) protein_coding-intron (ENSMUSG00000026113.17, intron 11 of 25) 13753 ENSMUSG00000026113.17 ENSMUSG00000026113 ENSMUST00000123124 Inpp4a protein_coding Interval_99733 chr2 164549677 164550900 + 0 NA promoter-TSS (ENSMUSG00000086179.1) lincRNA-promoter-TSS (ENSMUSG00000086179.1) -242 ENSMUSG00000086179.1 ENSMUSG00000086179 ENSMUST00000151754 Gm14317 lincRNA Interval_150649 chr7 113085454 113086240 + 0 NA Intergenic Intergenic -33851 ENSMUSG00000088671.1 ENSMUSG00000088671 ENSMUST00000158046 Gm23662 rRNA Interval_141940 chr6 135680019 135681658 + 0 NA intron (ENSMUSG00000107396.2, intron 2 of 2) lincRNA-intron (ENSMUSG00000107396.2, intron 2 of 2) 21925 ENSMUSG00000107396.2 ENSMUSG00000107396 ENSMUST00000203439 4930425L21Rik lincRNA Interval_120717 chr4 150250806 150251604 + 0 NA Intergenic Intergenic 3745 ENSMUSG00000063524.13 ENSMUSG00000063524 ENSMUST00000136310 Eno1 protein_coding Interval_7894 chr1 134423768 134424115 + 0 NA intron (ENSMUSG00000026457.14, intron 2 of 3) protein_coding-intron (ENSMUSG00000026457.14, intron 2 of 7) 8470 ENSMUSG00000026457.14 ENSMUSG00000026457 ENSMUST00000148822 Adipor1 protein_coding Interval_105124 chr3 81981886 81982105 + 0 NA promoter-TSS (ENSMUSG00000028008.10) protein_coding-promoter-TSS (ENSMUSG00000028008.10) -295 ENSMUSG00000028008.10 ENSMUSG00000028008 ENSMUST00000107736 Asic5 protein_coding Interval_50660 chr14 17695534 17696996 + 0 NA intron (ENSMUSG00000021779.17, intron 1 of 1) protein_coding-intron (ENSMUSG00000021779.17, intron 1 of 9) 74857 ENSMUSG00000114281.1 ENSMUSG00000114281 ENSMUST00000225878 Gm48320 processed_pseudogene Interval_88336 chr2 4082091 4082498 + 0 NA exon (ENSMUSG00000081889.1, exon 1 of 1) processed_pseudogene-exon (ENSMUSG00000081889.1, exon 1 of 1) 124 ENSMUSG00000081889.1 ENSMUSG00000081889 ENSMUST00000121150 Gm13188 processed_pseudogene Interval_88164 chr19 60159942 60161320 + 0 NA TTS (ENSMUSG00000053117.11) lincRNA-TTS (ENSMUSG00000053117.11) 9104 ENSMUSG00000053117.11 ENSMUSG00000053117 ENSMUST00000235893 E330013P04Rik lincRNA Interval_118777 chr4 133649692 133650647 + 0 NA promoter-TSS (ENSMUSG00000037553.14) protein_coding-promoter-TSS (ENSMUSG00000037553.14) -15 ENSMUSG00000037553.14 ENSMUSG00000037553 ENSMUST00000146464 Zdhhc18 protein_coding Interval_5335 chr1 87684056 87684647 + 0 NA intron (ENSMUSG00000026288.14, intron 4 of 22) protein_coding-intron (ENSMUSG00000026288.14, intron 9 of 26) 8112 ENSMUSG00000026288.14 ENSMUSG00000026288 ENSMUST00000163548 Inpp5d protein_coding Interval_22284 chr11 8534684 8535712 + 0 NA intron (ENSMUSG00000020422.14, intron 10 of 30) protein_coding-intron (ENSMUSG00000020422.14, intron 10 of 30) 129483 ENSMUSG00000020422.14 ENSMUSG00000020422 ENSMUST00000134823 Tns3 protein_coding Interval_144914 chr7 28904711 28904902 + 0 NA intron (ENSMUSG00000054808.15, intron 10 of 21) protein_coding-intron (ENSMUSG00000054808.15, intron 10 of 20) 13854 ENSMUSG00000054083.8 ENSMUSG00000054083 ENSMUST00000208299 Capn12 protein_coding Interval_46798 chr13 70637330 70638507 + 0 NA promoter-TSS (ENSMUSG00000034525.7) protein_coding-promoter-TSS (ENSMUSG00000034525.7) -12226 ENSMUSG00000113334.1 ENSMUSG00000113334 ENSMUST00000222964 D030007L05Rik lincRNA Interval_16196 chr10 61375069 61376050 + 0 NA intron (ENSMUSG00000020092.9, intron 1 of 19) protein_coding-intron (ENSMUSG00000020092.9, intron 1 of 19) 5489 ENSMUSG00000112875.1 ENSMUSG00000112875 ENSMUST00000219196 Gm48074 TEC Interval_94042 chr2 82052452 82054370 + 0 NA exon (ENSMUSG00000070866.4, exon 1 of 4) protein_coding-exon (ENSMUSG00000070866.4, exon 1 of 4) 69700 ENSMUSG00000082666.1 ENSMUSG00000082666 ENSMUST00000120739 Gm13677 processed_pseudogene Interval_19281 chr10 96055535 96055745 + 0 NA intron (ENSMUSG00000117008.1, intron 10 of 13) unitary_pseudogene-intron (ENSMUSG00000117008.1, intron 10 of 13) 40365 ENSMUSG00000117008.1 ENSMUSG00000117008 ENSMUST00000233655 Gm49817 unitary_pseudogene Interval_171163 chr9 114862045 114862502 + 0 NA Intergenic Intergenic -18117 ENSMUSG00000041012.4 ENSMUSG00000041012 ENSMUST00000213929 Cmtm8 protein_coding Interval_60821 chr15 76953469 76953683 + 0 NA Intergenic Intergenic 5047 ENSMUSG00000063236.6 ENSMUSG00000063236 ENSMUST00000229229 1110038F14Rik protein_coding Interval_100245 chr2 167911240 167911993 + 0 NA Intergenic Intergenic -20756 ENSMUSG00000027540.13 ENSMUSG00000027540 ENSMUST00000142717 Ptpn1 protein_coding Interval_29422 chr11 83907171 83907927 + 0 NA Intergenic Intergenic -38706 ENSMUSG00000020677.7 ENSMUSG00000020677 ENSMUST00000130982 Ddx52 protein_coding Interval_161703 chr8 122174225 122175560 + 0 NA intron (ENSMUSG00000092329.1, intron 1 of 15) protein_coding-intron (ENSMUSG00000092329.1, intron 1 of 15) -83728 ENSMUSG00000043903.4 ENSMUSG00000043903 ENSMUST00000055537 Zfp469 protein_coding Interval_42121 chr13 8970249 8970833 + 0 NA exon (ENSMUSG00000021149.8, exon 17 of 17) protein_coding-exon (ENSMUSG00000021149.8, exon 17 of 17) 3836 ENSMUSG00000113466.1 ENSMUSG00000113466 ENSMUST00000221977 Gm48649 unprocessed_pseudogene Interval_165037 chr9 44074454 44074854 + 0 NA intron (ENSMUSG00000032010.15, intron 1 of 1) protein_coding-intron (ENSMUSG00000032010.15, intron 1 of 12) -3186 ENSMUSG00000111415.1 ENSMUSG00000111415 ENSMUST00000216448 Gm39325 antisense Interval_170616 chr9 109554977 109555930 + 0 NA intron (ENSMUSG00000074060.10, intron 5 of 6) protein_coding-intron (ENSMUSG00000074060.10, intron 8 of 9) -12540 ENSMUSG00000105948.1 ENSMUSG00000105948 ENSMUST00000199162 Gm43089 processed_pseudogene Interval_67939 chr16 59891768 59892479 + 0 NA intron (ENSMUSG00000055540.15, intron 5 of 8) protein_coding-intron (ENSMUSG00000055540.15, intron 11 of 17) 252914 ENSMUSG00000116894.1 ENSMUSG00000116894 ENSMUST00000232302 4930547E14Rik processed_transcript Interval_42483 chr13 14021191 14022244 + 0 NA intron (ENSMUSG00000039233.12, intron 2 of 14) protein_coding-intron (ENSMUSG00000039233.12, intron 3 of 16) -12214 ENSMUSG00000039233.12 ENSMUSG00000039233 ENSMUST00000160776 Tbce protein_coding Interval_164260 chr9 34643227 34645035 + 0 NA intron (ENSMUSG00000032036.15, intron 1 of 15) protein_coding-intron (ENSMUSG00000032036.15, intron 1 of 16) 122376 ENSMUSG00000103552.1 ENSMUSG00000103552 ENSMUST00000194358 Gm38217 TEC Interval_167118 chr9 65450981 65451176 + 0 NA intron (ENSMUSG00000059183.12, intron 7 of 7) protein_coding-intron (ENSMUSG00000059183.12, intron 8 of 8) -2537 ENSMUSG00000111722.1 ENSMUSG00000111722 ENSMUST00000214308 Gm47270 lincRNA Interval_159239 chr8 92063510 92063747 + 0 NA Intergenic Intergenic 23711 ENSMUSG00000065636.1 ENSMUSG00000065636 ENSMUST00000083702 Gm24254 snRNA Interval_93181 chr2 70929433 70929914 + 0 NA Intergenic Intergenic 51844 ENSMUSG00000085868.1 ENSMUSG00000085868 ENSMUST00000150119 Gm13632 lincRNA Interval_42751 chr13 19031925 19033218 + 0 NA intron (ENSMUSG00000114080.1, intron 6 of 6) protein_coding-intron (ENSMUSG00000021314.13, intron 1 of 20) 25325 ENSMUSG00000114080.1 ENSMUSG00000114080 ENSMUST00000221738 Gm47661 antisense Interval_140323 chr6 116480366 116481420 + 0 NA Intergenic Intergenic 8039 ENSMUSG00000107914.1 ENSMUSG00000107914 ENSMUST00000203072 Gm44076 processed_pseudogene Interval_75124 chr17 63684664 63684966 + 0 NA Intergenic Intergenic 17675 ENSMUSG00000117014.1 ENSMUSG00000117014 ENSMUST00000233403 Gm9300 processed_pseudogene Interval_22353 chr11 9048187 9049288 + 0 NA exon (ENSMUSG00000040978.4, exon 1 of 7) protein_coding-exon (ENSMUSG00000040978.4, exon 1 of 7) 143 ENSMUSG00000040978.4 ENSMUSG00000040978 ENSMUST00000043285 Gm11992 protein_coding Interval_66856 chr16 38153484 38154771 + 0 NA intron (ENSMUSG00000022812.14, intron 2 of 5) protein_coding-intron (ENSMUSG00000022812.14, intron 2 of 10) -3881 ENSMUSG00000095395.2 ENSMUSG00000095395 ENSMUST00000179548 Gm25617 snoRNA Interval_141678 chr6 133195453 133195716 + 0 NA Intergenic Intergenic -1056 ENSMUSG00000094750.1 ENSMUSG00000094750 ENSMUST00000179732 Gm25019 miRNA Interval_8089 chr1 135670104 135670721 + 0 NA intron (ENSMUSG00000009418.16, intron 1 of 30) protein_coding-intron (ENSMUSG00000009418.16, intron 1 of 1) -49649 ENSMUSG00000026421.14 ENSMUSG00000026421 ENSMUST00000027677 Csrp1 protein_coding Interval_109255 chr3 138395918 138397149 + 0 NA Intergenic Intergenic -18933 ENSMUSG00000037797.14 ENSMUSG00000037797 ENSMUST00000013458 Adh4 protein_coding Interval_5266 chr1 87086918 87087535 + 0 NA exon (ENSMUSG00000026246.12, exon 11 of 11) protein_coding-exon (ENSMUSG00000026246.12, exon 11 of 11) 2579 ENSMUSG00000026246.12 ENSMUSG00000026246 ENSMUST00000190082 Alppl2 protein_coding Interval_146833 chr7 52794416 52795372 + 0 NA Intergenic Intergenic 39429 ENSMUSG00000074092.5 ENSMUSG00000074092 ENSMUST00000117187 Gm6181 processed_pseudogene Interval_32310 chr11 106819166 106819485 + 0 NA TTS (ENSMUSG00000018372.13) protein_coding-TTS (ENSMUSG00000018372.13) 1491 ENSMUSG00000018372.13 ENSMUSG00000018372 ENSMUST00000124898 Cep95 protein_coding Interval_14966 chr10 41534234 41534709 + 0 NA Intergenic Intergenic 14579 ENSMUSG00000019818.15 ENSMUSG00000019818 ENSMUST00000186388 Cd164 protein_coding Interval_54870 chr14 75921675 75922755 + 0 NA intron (ENSMUSG00000067995.4, intron 5 of 7) protein_coding-intron (ENSMUSG00000067995.4, intron 5 of 7) -32794 ENSMUSG00000046523.5 ENSMUSG00000046523 ENSMUST00000050120 Kctd4 protein_coding Interval_153750 chr8 6572140 6572850 + 0 NA Intergenic Intergenic 134751 ENSMUSG00000109543.1 ENSMUSG00000109543 ENSMUST00000207242 Gm44844 processed_pseudogene Interval_138647 chr6 90715870 90716908 + 0 NA exon (ENSMUSG00000034312.15, exon 1 of 14) protein_coding-exon (ENSMUSG00000034312.15, exon 1 of 14) 26658 ENSMUSG00000107999.1 ENSMUSG00000107999 ENSMUST00000204662 Gm44123 antisense Interval_58220 chr15 31150658 31151235 + 0 NA Intergenic Intergenic 43392 ENSMUSG00000077468.1 ENSMUSG00000077468 ENSMUST00000104280 Gm26416 snoRNA Interval_12011 chr1 188795453 188796109 + 0 NA intron (ENSMUSG00000026609.15, intron 48 of 70) protein_coding-intron (ENSMUSG00000026609.15, intron 48 of 70) 35305 ENSMUSG00000084550.1 ENSMUSG00000084550 ENSMUST00000122601 Gm25269 snRNA Interval_4766 chr1 78501396 78501653 + 0 NA promoter-TSS (ENSMUSG00000090486.2) protein_coding-promoter-TSS (ENSMUSG00000090486.2) -359 ENSMUSG00000090486.2 ENSMUSG00000090486 ENSMUST00000190853 BC035947 protein_coding Interval_169361 chr9 96705118 96706607 + 0 NA promoter-TSS (ENSMUSG00000102097.1) antisense-promoter-TSS (ENSMUSG00000102097.1) 34 ENSMUSG00000102097.1 ENSMUSG00000102097 ENSMUST00000186821 A930006L05Rik antisense Interval_97607 chr2 140427308 140428244 + 0 NA intron (ENSMUSG00000068205.14, intron 2 of 4) protein_coding-intron (ENSMUSG00000068205.14, intron 2 of 17) 12871 ENSMUSG00000065769.1 ENSMUSG00000065769 ENSMUST00000083835 Gm23846 snRNA Interval_120980 chr4 152038390 152039960 + 0 NA promoter-TSS (ENSMUSG00000028950.3) protein_coding-promoter-TSS (ENSMUSG00000028950.3) -146 ENSMUSG00000028948.16 ENSMUSG00000028948 ENSMUST00000131696 Nol9 protein_coding Interval_134982 chr6 34316878 34317806 + 0 NA promoter-TSS (ENSMUSG00000001642.18) protein_coding-promoter-TSS (ENSMUSG00000001642.18) -9885 ENSMUSG00000001642.18 ENSMUSG00000001642 ENSMUST00000154655 Akr1b3 protein_coding Interval_83099 chr18 81251727 81253467 + 0 NA Intergenic Intergenic -12094 ENSMUSG00000117717.1 ENSMUSG00000117717 ENSMUST00000236674 Gm30192 lincRNA Interval_9107 chr1 153641378 153642809 + 0 NA Intergenic Intergenic -21420 ENSMUSG00000099858.1 ENSMUSG00000099858 ENSMUST00000186414 Gm6652 processed_pseudogene Interval_125395 chr5 66662869 66663397 + 0 NA intron (ENSMUSG00000087601.3, intron 1 of 3) antisense-intron (ENSMUSG00000087601.3, intron 1 of 4) 12900 ENSMUSG00000087601.3 ENSMUSG00000087601 ENSMUST00000177319 Uchl1os antisense Interval_142944 chr6 147188893 147189440 + 0 NA intron (ENSMUSG00000085600.7, intron 2 of 2) lincRNA-intron (ENSMUSG00000085600.7, intron 2 of 2) 8922 ENSMUSG00000085600.7 ENSMUSG00000085600 ENSMUST00000133471 E330012B07Rik lincRNA Interval_32742 chr11 110271678 110272007 + 0 NA exon (ENSMUSG00000018800.14, exon 39 of 39) protein_coding-exon (ENSMUSG00000018800.14, exon 39 of 39) -20066 ENSMUSG00000044749.13 ENSMUSG00000044749 ENSMUST00000150988 Abca6 protein_coding Interval_172877 chrX 52717423 52717685 + 0 NA Intergenic Intergenic 24213 ENSMUSG00000070106.1 ENSMUSG00000070106 ENSMUST00000093598 Mir363 miRNA Interval_68513 chr16 78309373 78309733 + 0 NA intron (ENSMUSG00000022865.14, intron 2 of 3) protein_coding-intron (ENSMUSG00000022865.14, intron 1 of 6) -14566 ENSMUSG00000109841.2 ENSMUSG00000109841 ENSMUST00000210555 E330011O21Rik processed_transcript Interval_101456 chr2 181537601 181538568 + 0 NA intron (ENSMUSG00000000826.16, intron 2 of 5) protein_coding-intron (ENSMUSG00000000826.16, intron 1 of 4) 17272 ENSMUSG00000000826.16 ENSMUSG00000000826 ENSMUST00000141523 Dnajc5 protein_coding Interval_165189 chr9 45121818 45122836 + 0 NA intron (ENSMUSG00000070304.12, intron 1 of 3) protein_coding-intron (ENSMUSG00000070304.12, intron 1 of 4) 4545 ENSMUSG00000070304.12 ENSMUSG00000070304 ENSMUST00000093855 Scn2b protein_coding Interval_117562 chr4 124682003 124682534 + 0 NA exon (ENSMUSG00000028907.7, exon 6 of 8) protein_coding-exon (ENSMUSG00000028907.7, exon 6 of 8) 11266 ENSMUSG00000028907.7 ENSMUSG00000028907 ENSMUST00000153088 Utp11 protein_coding Interval_1502 chr1 24298757 24298986 + 0 NA intron (ENSMUSG00000026141.13, intron 29 of 39) protein_coding-intron (ENSMUSG00000026141.13, intron 40 of 47) 69354 ENSMUSG00000026147.16 ENSMUSG00000026147 ENSMUST00000147902 Col9a1 protein_coding Interval_100885 chr2 173106149 173108385 + 0 NA intron (ENSMUSG00000070495.11, intron 7 of 11) protein_coding-intron (ENSMUSG00000070495.11, intron 7 of 10) 12258 ENSMUSG00000070495.11 ENSMUSG00000070495 ENSMUST00000179693 Ctcfl protein_coding Interval_80876 chr18 49797774 49798357 + 0 NA Intergenic Intergenic 19893 ENSMUSG00000100134.1 ENSMUSG00000100134 ENSMUST00000186872 1700065O20Rik lincRNA Interval_149789 chr7 101514786 101516715 + 0 NA Intergenic Intergenic 22580 ENSMUSG00000110301.1 ENSMUSG00000110301 ENSMUST00000209330 Gm35363 lincRNA Interval_97192 chr2 132159382 132159662 + 0 NA intron (ENSMUSG00000086756.1, intron 2 of 2) antisense-intron (ENSMUSG00000086756.1, intron 2 of 2) 14989 ENSMUSG00000086756.1 ENSMUSG00000086756 ENSMUST00000131603 Gm14051 antisense Interval_52023 chr14 34673329 34674766 + 0 NA promoter-TSS (ENSMUSG00000041408.18) protein_coding-promoter-TSS (ENSMUSG00000041408.18) -284 ENSMUSG00000115007.1 ENSMUSG00000115007 ENSMUST00000228874 5830448L01Rik bidirectional_promoter_lncRNA Interval_119346 chr4 137047900 137049376 + 0 NA promoter-TSS (ENSMUSG00000060862.10) protein_coding-promoter-TSS (ENSMUSG00000060862.10) 22954 ENSMUSG00000077624.1 ENSMUSG00000077624 ENSMUST00000104436 Gm23834 snoRNA Interval_122507 chr5 23486623 23487026 + 0 NA TTS (ENSMUSG00000088170.1) misc_RNA-TTS (ENSMUSG00000088170.1) 899 ENSMUSG00000088170.1 ENSMUSG00000088170 ENSMUST00000157545 Gm25219 misc_RNA Interval_76899 chr17 84828980 84829191 + 0 NA intron (ENSMUSG00000117595.1, intron 2 of 3) lincRNA-intron (ENSMUSG00000117595.1, intron 2 of 3) 11211 ENSMUSG00000117595.1 ENSMUSG00000117595 ENSMUST00000235108 Gm49981 lincRNA Interval_151717 chr7 126229064 126229274 + 0 NA intron (ENSMUSG00000108676.1, intron 3 of 4) lincRNA-intron (ENSMUSG00000108676.1, intron 3 of 4) 13458 ENSMUSG00000108309.1 ENSMUSG00000108309 ENSMUST00000205724 Gm44703 processed_pseudogene Interval_165370 chr9 46749494 46749693 + 0 NA Intergenic Intergenic -35435 ENSMUSG00000111783.1 ENSMUSG00000111783 ENSMUST00000216630 Gm8863 processed_pseudogene Interval_49783 chr13 115100525 115102493 + 0 NA exon (ENSMUSG00000042284.10, exon 1 of 29) protein_coding-exon (ENSMUSG00000042284.10, exon 1 of 29) 200 ENSMUSG00000114470.1 ENSMUSG00000114470 ENSMUST00000225093 Gm49395 protein_coding Interval_156442 chr8 48224404 48224781 + 0 NA Intergenic Intergenic 46393 ENSMUSG00000110480.1 ENSMUSG00000110480 ENSMUST00000212653 Gm32842 processed_pseudogene Interval_4658 chr1 75754136 75754486 + 0 NA Intergenic Intergenic 117921 ENSMUSG00000082012.1 ENSMUSG00000082012 ENSMUST00000121823 Gm5257 processed_pseudogene Interval_79468 chr18 32126715 32127561 + 0 NA TTS (ENSMUSG00000024386.9) protein_coding-TTS (ENSMUSG00000024386.9) -8355 ENSMUSG00000117650.1 ENSMUSG00000117650 ENSMUST00000234068 4933435E02Rik lincRNA Interval_104356 chr3 63975697 63976985 + 0 NA intron (ENSMUSG00000027823.9, intron 1 of 15) protein_coding-intron (ENSMUSG00000027823.9, intron 1 of 15) 235 ENSMUSG00000027823.9 ENSMUSG00000027823 ENSMUST00000029405 Gmps protein_coding Interval_124801 chr5 54206433 54207904 + 0 NA Intergenic Intergenic 91311 ENSMUSG00000039156.19 ENSMUSG00000039156 ENSMUST00000202342 Stim2 protein_coding Interval_40867 chr12 108981667 108982240 + 0 NA intron (ENSMUSG00000040877.16, intron 2 of 2) protein_coding-intron (ENSMUSG00000040877.16, intron 4 of 7) 9698 ENSMUSG00000113478.1 ENSMUSG00000113478 ENSMUST00000220743 Gm18405 processed_pseudogene Interval_90869 chr2 33097999 33098291 + 0 NA intron (ENSMUSG00000038860.15, intron 2 of 29) protein_coding-intron (ENSMUSG00000038860.15, intron 2 of 4) 60025 ENSMUSG00000038831.16 ENSMUSG00000038831 ENSMUST00000113164 Ralgps1 protein_coding Interval_53356 chr14 56589605 56589829 + 0 NA intron (ENSMUSG00000054509.7, intron 5 of 34) protein_coding-intron (ENSMUSG00000054509.7, intron 5 of 34) 30796 ENSMUSG00000090038.7 ENSMUSG00000090038 ENSMUST00000161382 Gm16573 antisense Interval_85805 chr19 31936276 31937324 + 0 NA intron (ENSMUSG00000052595.8, intron 9 of 11) protein_coding-intron (ENSMUSG00000052595.8, intron 9 of 11) -13284 ENSMUSG00000118366.1 ENSMUSG00000118366 ENSMUST00000237398 9130016M20Rik lincRNA Interval_69365 chr16 92487461 92488130 + 0 NA intron (ENSMUSG00000022949.9, intron 1 of 2) sense_overlapping-intron (ENSMUSG00000051297.8, intron 1 of 2) 2059 ENSMUSG00000022949.9 ENSMUSG00000022949 ENSMUST00000023670 Clic6 protein_coding Interval_157859 chr8 75015830 75016361 + 0 NA promoter-TSS (ENSMUSG00000034518.14) protein_coding-promoter-TSS (ENSMUSG00000034518.14) 16226 ENSMUSG00000034518.14 ENSMUSG00000034518 ENSMUST00000129391 Hmgxb4 protein_coding Interval_174203 chrX 139570932 139571135 + 0 NA intron (ENSMUSG00000031438.11, intron 1 of 6) protein_coding-intron (ENSMUSG00000031438.11, intron 1 of 6) -40334 ENSMUSG00000031438.11 ENSMUSG00000031438 ENSMUST00000113029 Rnf128 protein_coding Interval_172019 chr9 123554094 123555209 + 0 NA intron (ENSMUSG00000025240.10, intron 5 of 19) protein_coding-intron (ENSMUSG00000025240.10, intron 5 of 19) 24892 ENSMUSG00000025240.10 ENSMUSG00000025240 ENSMUST00000215004 Sacm1l protein_coding Interval_9597 chr1 160081007 160081695 + 0 NA Intergenic Intergenic -3409 ENSMUSG00000026729.9 ENSMUSG00000026729 ENSMUST00000169600 4930562F07Rik lincRNA Interval_67452 chr16 48855364 48856581 + 0 NA Intergenic Intergenic 13421 ENSMUSG00000061100.5 ENSMUSG00000061100 ENSMUST00000023329 Retnla protein_coding Interval_78485 chr18 13588779 13589866 + 0 NA intron (ENSMUSG00000117608.1, intron 2 of 5) lincRNA-intron (ENSMUSG00000117608.1, intron 2 of 5) 12078 ENSMUSG00000117608.1 ENSMUSG00000117608 ENSMUST00000234112 AC103362.1 lincRNA Interval_98743 chr2 154633338 154633976 + 0 NA intron (ENSMUSG00000059842.12, intron 7 of 13) protein_coding-intron (ENSMUSG00000059842.12, intron 8 of 14) -1021 ENSMUSG00000085483.1 ENSMUSG00000085483 ENSMUST00000153208 Gm14198 antisense Interval_133787 chr6 12194359 12194684 + 0 NA Intergenic Intergenic 65895 ENSMUSG00000108209.1 ENSMUSG00000108209 ENSMUST00000203296 Gm32222 processed_pseudogene Interval_25525 chr11 49574500 49575535 + 0 NA Intergenic Intergenic 13445 ENSMUSG00000069890.3 ENSMUSG00000069890 ENSMUST00000093146 1700024J04Rik pseudogene Interval_38140 chr12 75901504 75902560 + 0 NA intron (ENSMUSG00000063450.14, intron 11 of 12) protein_coding-intron (ENSMUSG00000063450.14, intron 11 of 115) -7071 ENSMUSG00000092922.1 ENSMUSG00000092922 ENSMUST00000175181 Mir5101 miRNA Interval_100460 chr2 169131795 169132547 + 0 NA Intergenic Intergenic 25718 ENSMUSG00000086238.1 ENSMUSG00000086238 ENSMUST00000144607 Gm14258 lincRNA Interval_153398 chr7 144414764 144416287 + 0 NA intron (ENSMUSG00000037541.22, intron 12 of 12) protein_coding-intron (ENSMUSG00000037541.22, intron 9 of 9) -8592 ENSMUSG00000085745.1 ENSMUSG00000085745 ENSMUST00000125355 Gm14372 antisense Interval_40435 chr12 104870350 104871064 + 0 NA intron (ENSMUSG00000021101.2, intron 1 of 1) lincRNA-intron (ENSMUSG00000021101.2, intron 1 of 1) -5631 ENSMUSG00000021097.15 ENSMUSG00000021097 ENSMUST00000222412 Clmn protein_coding Interval_11489 chr1 182159668 182160187 + 0 NA intron (ENSMUSG00000091013.3, intron 1 of 2) protein_coding-intron (ENSMUSG00000091013.3, intron 1 of 2) 4559 ENSMUSG00000091013.3 ENSMUSG00000091013 ENSMUST00000169123 Vmn1r1 protein_coding Interval_15048 chr10 42209863 42210831 + 0 NA intron (ENSMUSG00000048756.11, intron 2 of 2) protein_coding-intron (ENSMUSG00000048756.11, intron 2 of 3) 48019 ENSMUSG00000048756.11 ENSMUSG00000048756 ENSMUST00000105501 Foxo3 protein_coding Interval_35225 chr12 18505944 18506522 + 0 NA TTS (ENSMUSG00000113436.1) processed_pseudogene-TTS (ENSMUSG00000113436.1) 511 ENSMUSG00000113436.1 ENSMUSG00000113436 ENSMUST00000222355 Gm48392 processed_pseudogene Interval_120538 chr4 149214172 149215262 + 0 NA promoter-TSS (ENSMUSG00000063077.15) protein_coding-promoter-TSS (ENSMUSG00000063077.15) -47946 ENSMUSG00000028961.15 ENSMUSG00000028961 ENSMUST00000143944 Pgd protein_coding Interval_52902 chr14 51941298 51941717 + 0 NA Intergenic Intergenic -11847 ENSMUSG00000115698.1 ENSMUSG00000115698 ENSMUST00000227552 Gm49076 lincRNA Interval_112002 chr4 33146722 33148293 + 0 NA intron (ENSMUSG00000028280.9, intron 2 of 9) protein_coding-intron (ENSMUSG00000028280.9, intron 2 of 9) 14986 ENSMUSG00000028280.9 ENSMUSG00000028280 ENSMUST00000029947 Gabrr1 protein_coding Interval_69767 chr16 96126915 96128494 + 0 NA promoter-TSS (ENSMUSG00000040681.16) protein_coding-promoter-TSS (ENSMUSG00000040681.16) -2365 ENSMUSG00000040681.16 ENSMUSG00000040681 ENSMUST00000233297 Hmgn1 protein_coding Interval_4505 chr1 74674457 74674745 + 0 NA intron (ENSMUSG00000033257.14, intron 2 of 4) protein_coding-intron (ENSMUSG00000033257.14, intron 2 of 19) -14822 ENSMUSG00000033257.14 ENSMUSG00000033257 ENSMUST00000143790 Ttll4 protein_coding Interval_86791 chr19 43906092 43906897 + 0 NA intron (ENSMUSG00000025195.9, intron 3 of 15) protein_coding-intron (ENSMUSG00000025195.9, intron 2 of 14) -13979 ENSMUSG00000118000.1 ENSMUSG00000118000 ENSMUST00000235838 Gm50217 lincRNA Interval_110645 chr4 5686618 5687981 + 0 NA TTS (ENSMUSG00000077392.1) snoRNA-TTS (ENSMUSG00000077392.1) 503 ENSMUSG00000077392.1 ENSMUSG00000077392 ENSMUST00000104204 Gm24337 snoRNA Interval_119882 chr4 140666435 140666892 + 0 NA promoter-TSS (ENSMUSG00000040964.16) protein_coding-promoter-TSS (ENSMUSG00000040964.16) -13090 ENSMUSG00000086159.1 ENSMUSG00000086159 ENSMUST00000141469 Gm13025 lincRNA Interval_106770 chr3 100578535 100579700 + 0 NA intron (ENSMUSG00000008763.16, intron 11 of 12) protein_coding-intron (ENSMUSG00000008763.16, intron 11 of 12) 8410 ENSMUSG00000105824.1 ENSMUSG00000105824 ENSMUST00000197836 Gm43466 sense_intronic Interval_20233 chr10 116324557 116325020 + 0 NA intron (ENSMUSG00000020154.10, intron 9 of 33) protein_coding-intron (ENSMUSG00000020154.10, intron 7 of 31) -15795 ENSMUSG00000065086.1 ENSMUSG00000065086 ENSMUST00000083152 Gm26495 snoRNA Interval_157006 chr8 64347444 64348543 + 0 NA Intergenic Intergenic 69107 ENSMUSG00000109579.1 ENSMUSG00000109579 ENSMUST00000211285 Gm35521 lincRNA Interval_30863 chr11 96950919 96951202 + 0 NA intron (ENSMUSG00000078700.10, intron 2 of 5) processed_transcript-intron (ENSMUSG00000078700.10, intron 2 of 5) 6748 ENSMUSG00000078700.10 ENSMUSG00000078700 ENSMUST00000186326 D030028A08Rik processed_transcript Interval_94112 chr2 84373463 84374287 + 0 NA intron (ENSMUSG00000059588.13, intron 1 of 12) protein_coding-intron (ENSMUSG00000059588.13, intron 5 of 15) 51391 ENSMUSG00000059588.13 ENSMUSG00000059588 ENSMUST00000151295 Calcrl protein_coding Interval_150099 chr7 106383979 106384440 + 0 NA Intergenic Intergenic 40260 ENSMUSG00000053541.3 ENSMUSG00000053541 ENSMUST00000183414 Gm4759 unprocessed_pseudogene Interval_172968 chrX 58037962 58040230 + 0 NA intron (ENSMUSG00000067860.11, intron 2 of 2) protein_coding-intron (ENSMUSG00000067860.11, intron 2 of 2) 16396 ENSMUSG00000067860.11 ENSMUSG00000067860 ENSMUST00000088629 Zic3 protein_coding Interval_83998 chr19 6014939 6016756 + 0 NA promoter-TSS (ENSMUSG00000024942.17) protein_coding-promoter-TSS (ENSMUSG00000024942.17) -462 ENSMUSG00000024942.17 ENSMUSG00000024942 ENSMUST00000235138 Capn1 protein_coding Interval_88039 chr19 58227953 58228328 + 0 NA intron (ENSMUSG00000087002.1, intron 1 of 1) antisense-intron (ENSMUSG00000087002.1, intron 1 of 1) 24001 ENSMUSG00000087002.1 ENSMUSG00000087002 ENSMUST00000143595 Gm16277 antisense Interval_22091 chr11 6300616 6301425 + 0 NA intron (ENSMUSG00000020456.17, intron 2 of 2) protein_coding-intron (ENSMUSG00000020456.17, intron 2 of 22) 9035 ENSMUSG00000020456.17 ENSMUSG00000020456 ENSMUST00000081894 Ogdh protein_coding Interval_168188 chr9 77834473 77835281 + 0 NA Intergenic Intergenic -1153 ENSMUSG00000111250.1 ENSMUSG00000111250 ENSMUST00000214737 Gm47818 lincRNA Interval_125295 chr5 66004196 66005652 + 0 NA promoter-TSS (ENSMUSG00000054598.13) protein_coding-promoter-TSS (ENSMUSG00000054598.13) -3591 ENSMUSG00000054598.13 ENSMUSG00000054598 ENSMUST00000201302 9130230L23Rik protein_coding Interval_71145 chr17 20050988 20051518 + 0 NA Intergenic Intergenic 2210 ENSMUSG00000117099.1 ENSMUSG00000117099 ENSMUST00000233551 Gm3547 processed_pseudogene Interval_116288 chr4 109334622 109334962 + 0 NA intron (ENSMUSG00000028552.13, intron 12 of 24) protein_coding-intron (ENSMUSG00000028552.13, intron 12 of 24) -35756 ENSMUSG00000028552.13 ENSMUSG00000028552 ENSMUST00000177140 Eps15 protein_coding Interval_18251 chr10 84301722 84303790 + 0 NA Intergenic Intergenic -6130 ENSMUSG00000111875.1 ENSMUSG00000111875 ENSMUST00000214125 Gm5425 processed_pseudogene Interval_137765 chr6 82230823 82231091 + 0 NA Intergenic Intergenic -11217 ENSMUSG00000108224.1 ENSMUSG00000108224 ENSMUST00000204563 Gm31861 processed_pseudogene Interval_122955 chr5 27815394 27815923 + 0 NA Intergenic Intergenic -1832 ENSMUSG00000105223.1 ENSMUSG00000105223 ENSMUST00000196573 Gm43433 processed_pseudogene Interval_110834 chr4 8837539 8837756 + 0 NA intron (ENSMUSG00000041235.12, intron 15 of 37) protein_coding-intron (ENSMUSG00000041235.12, intron 15 of 37) -17584 ENSMUSG00000041235.12 ENSMUSG00000041235 ENSMUST00000222546 Chd7 protein_coding Interval_53094 chr14 54417593 54418336 + 0 NA promoter-TSS (ENSMUSG00000000958.10) protein_coding-promoter-TSS (ENSMUSG00000000958.10) -7762 ENSMUSG00000000958.10 ENSMUSG00000000958 ENSMUST00000195999 Slc7a7 protein_coding Interval_83258 chr18 83061754 83062345 + 0 NA intron (ENSMUSG00000118094.1, intron 4 of 6) processed_transcript-intron (ENSMUSG00000118094.1, intron 4 of 6) -40894 ENSMUSG00000117976.1 ENSMUSG00000117976 ENSMUST00000238101 Gm50437 lincRNA Interval_41004 chr12 110549127 110549836 + 0 NA intron (ENSMUSG00000017843.14, intron 7 of 12) protein_coding-intron (ENSMUSG00000017843.14, intron 5 of 13) -41031 ENSMUSG00000113361.1 ENSMUSG00000113361 ENSMUST00000221143 B930059L03Rik lincRNA Interval_145891 chr7 41490224 41490661 + 0 NA promoter-TSS (ENSMUSG00000083500.1) processed_pseudogene-promoter-TSS (ENSMUSG00000083500.1) 91 ENSMUSG00000083500.1 ENSMUSG00000083500 ENSMUST00000119135 Gm15470 processed_pseudogene Interval_62244 chr15 89140012 89141470 + 0 NA promoter-TSS (ENSMUSG00000022610.10) protein_coding-promoter-TSS (ENSMUSG00000022610.10) -3127 ENSMUSG00000022610.10 ENSMUSG00000022610 ENSMUST00000229193 Mapk12 protein_coding Interval_75479 chr17 67123562 67124340 + 0 NA intron (ENSMUSG00000033278.10, intron 2 of 19) protein_coding-intron (ENSMUSG00000033278.10, intron 2 of 32) -97716 ENSMUSG00000093508.1 ENSMUSG00000093508 ENSMUST00000176783 Mir5709 miRNA Interval_144671 chr7 27433083 27434433 + 0 NA TTS (ENSMUSG00000011751.16) protein_coding-TTS (ENSMUSG00000011751.16) 622 ENSMUSG00000108416.1 ENSMUSG00000108416 ENSMUST00000138087 Gm44924 processed_transcript Interval_51015 chr14 21615194 21615895 + 0 NA intron (ENSMUSG00000021767.19, intron 2 of 15) protein_coding-intron (ENSMUSG00000021767.19, intron 3 of 16) 87558 ENSMUSG00000063821.6 ENSMUSG00000063821 ENSMUST00000224735 Dupd1 protein_coding Interval_164157 chr9 32038662 32038994 + 0 NA Intergenic Intergenic 6030 ENSMUSG00000110845.1 ENSMUSG00000110845 ENSMUST00000216731 Gm47481 processed_pseudogene Interval_157992 chr8 77618028 77618388 + 0 NA intron (ENSMUSG00000086451.8, intron 3 of 13) processed_transcript-intron (ENSMUSG00000086451.8, intron 3 of 13) -5964 ENSMUSG00000086781.1 ENSMUSG00000086781 ENSMUST00000134397 1700092C02Rik lincRNA Interval_150205 chr7 108026263 108028511 + 0 NA Intergenic Intergenic 6602 ENSMUSG00000094426.3 ENSMUSG00000094426 ENSMUST00000049719 Olfr478 protein_coding Interval_112801 chr4 45095546 45095862 + 0 NA Intergenic Intergenic 12410 ENSMUSG00000078713.8 ENSMUSG00000078713 ENSMUST00000107807 Tomm5 protein_coding Interval_75781 chr17 71319990 71320257 + 0 NA intron (ENSMUSG00000117137.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000117137.1, intron 1 of 2) 4694 ENSMUSG00000117137.1 ENSMUSG00000117137 ENSMUST00000233188 4930471L23Rik lincRNA Interval_136706 chr6 58193470 58193858 + 0 NA intron (ENSMUSG00000107521.1, intron 2 of 2) lincRNA-intron (ENSMUSG00000107521.1, intron 2 of 2) 1343 ENSMUSG00000107521.1 ENSMUSG00000107521 ENSMUST00000203809 Gm43994 lincRNA Interval_106455 chr3 96463746 96464539 + 0 NA TTS (ENSMUSG00000106641.1) TEC-TTS (ENSMUSG00000106641.1) 2782 ENSMUSG00000106641.1 ENSMUSG00000106641 ENSMUST00000197685 Gm43534 TEC Interval_94704 chr2 93566086 93566476 + 0 NA Intergenic Intergenic -76107 ENSMUSG00000040310.12 ENSMUSG00000040310 ENSMUST00000111254 Alx4 protein_coding Interval_31339 chr11 100138646 100138907 + 0 NA Intergenic Intergenic -4378 ENSMUSG00000054146.8 ENSMUSG00000054146 ENSMUST00000148502 Krt15 protein_coding Interval_126289 chr5 86138327 86138596 + 0 NA intron (ENSMUSG00000035898.13, intron 17 of 28) protein_coding-intron (ENSMUSG00000035898.13, intron 17 of 32) 34278 ENSMUSG00000035898.13 ENSMUSG00000035898 ENSMUST00000147734 Uba6 protein_coding Interval_136310 chr6 52842883 52843962 + 0 NA exon (ENSMUSG00000081872.1, exon 1 of 1) processed_pseudogene-exon (ENSMUSG00000081872.1, exon 1 of 1) 279 ENSMUSG00000081872.1 ENSMUSG00000081872 ENSMUST00000119248 Gm15572 processed_pseudogene Interval_140197 chr6 115312812 115313964 + 0 NA Intergenic Intergenic 60393 ENSMUSG00000009394.13 ENSMUSG00000009394 ENSMUST00000204726 Syn2 protein_coding Interval_55100 chr14 78058315 78058591 + 0 NA Intergenic Intergenic -12264 ENSMUSG00000092272.1 ENSMUSG00000092272 ENSMUST00000174283 Gm19301 lincRNA Interval_99481 chr2 162268204 162268586 + 0 NA intron (ENSMUSG00000053141.16, intron 3 of 29) protein_coding-intron (ENSMUSG00000053141.16, intron 3 of 30) -122418 ENSMUSG00000084919.1 ENSMUSG00000084919 ENSMUST00000151688 Ptprtos antisense Interval_145297 chr7 31207740 31208846 + 0 NA promoter-TSS (ENSMUSG00000104113.1) TEC-promoter-TSS (ENSMUSG00000104113.1) -64 ENSMUSG00000104113.1 ENSMUSG00000104113 ENSMUST00000192062 Gm37292 TEC Interval_155687 chr8 36155227 36156116 + 0 NA promoter-TSS (ENSMUSG00000109704.1) lincRNA-promoter-TSS (ENSMUSG00000109704.1) -3808 ENSMUSG00000109704.1 ENSMUSG00000109704 ENSMUST00000211253 Gm38414 lincRNA Interval_43105 chr13 24112836 24113722 + 0 NA promoter-TSS (ENSMUSG00000021338.17) protein_coding-promoter-TSS (ENSMUSG00000021338.17) -82618 ENSMUSG00000081707.1 ENSMUSG00000081707 ENSMUST00000120579 Gm11343 processed_pseudogene Interval_1336 chr1 20773779 20774674 + 0 NA Intergenic Intergenic 5328 ENSMUSG00000041872.9 ENSMUSG00000041872 ENSMUST00000190692 Il17f protein_coding Interval_80417 chr18 42036331 42036924 + 0 NA Intergenic Intergenic -37578 ENSMUSG00000073574.4 ENSMUSG00000073574 ENSMUST00000097591 Grxcr2 protein_coding Interval_145468 chr7 34990185 34990796 + 0 NA intron (ENSMUSG00000063931.14, intron 5 of 6) protein_coding-intron (ENSMUSG00000063931.14, intron 9 of 14) 20980 ENSMUSG00000063931.14 ENSMUSG00000063931 ENSMUST00000160459 Pepd protein_coding Interval_62514 chr15 93930930 93931161 + 0 NA Intergenic Intergenic -3934 ENSMUSG00000116360.1 ENSMUSG00000116360 ENSMUST00000230109 9430014N10Rik lincRNA Interval_32967 chr11 113409068 113409629 + 0 NA intron (ENSMUSG00000041654.15, intron 5 of 5) protein_coding-intron (ENSMUSG00000041654.15, intron 6 of 10) -58629 ENSMUSG00000078251.2 ENSMUSG00000078251 ENSMUST00000105048 Gm16487 pseudogene Interval_129144 chr5 117780461 117781484 + 0 NA promoter-TSS (ENSMUSG00000029361.18) protein_coding-promoter-TSS (ENSMUSG00000029361.18) -86147 ENSMUSG00000029361.18 ENSMUSG00000029361 ENSMUST00000138554 Nos1 protein_coding Interval_163388 chr9 21213477 21214001 + 0 NA TTS (ENSMUSG00000032177.17) protein_coding-TTS (ENSMUSG00000032177.17) -11632 ENSMUSG00000097439.6 ENSMUSG00000097439 ENSMUST00000193429 Gm16754 antisense Interval_32111 chr11 105299760 105300104 + 0 NA intron (ENSMUSG00000020695.14, intron 1 of 2) protein_coding-intron (ENSMUSG00000020695.14, intron 1 of 19) -40900 ENSMUSG00000020695.14 ENSMUSG00000020695 ENSMUST00000151135 Mrc2 protein_coding Interval_145507 chr7 35275570 35275882 + 0 NA promoter-TSS (ENSMUSG00000118454.1) protein_coding-promoter-TSS (ENSMUSG00000118454.1) -193 ENSMUSG00000118454.1 ENSMUSG00000118454 ENSMUST00000238407 Wdr88 protein_coding Interval_90143 chr2 28512987 28515132 + 0 NA intron (ENSMUSG00000026821.16, intron 1 of 3) protein_coding-intron (ENSMUSG00000026821.16, intron 1 of 17) 7960 ENSMUSG00000063611.5 ENSMUSG00000063611 ENSMUST00000238539 Gm10134 lincRNA Interval_112004 chr4 33180384 33180991 + 0 NA TTS (ENSMUSG00000054659.13) protein_coding-TTS (ENSMUSG00000054659.13) 9050 ENSMUSG00000054659.13 ENSMUSG00000054659 ENSMUST00000119167 Pm20d2 protein_coding Interval_115974 chr4 106707522 106708987 + 0 NA TTS (ENSMUSG00000047502.14) protein_coding-TTS (ENSMUSG00000047502.14) 22671 ENSMUSG00000047502.14 ENSMUSG00000047502 ENSMUST00000148281 Mroh7 protein_coding Interval_89393 chr2 20384994 20385212 + 0 NA intron (ENSMUSG00000036617.17, intron 2 of 3) protein_coding-intron (ENSMUSG00000036617.17, intron 3 of 7) 47831 ENSMUSG00000085477.7 ENSMUSG00000085477 ENSMUST00000149398 Gm13335 antisense Interval_83667 chr19 3586042 3587105 + 0 NA intron (ENSMUSG00000024913.16, intron 21 of 22) protein_coding-intron (ENSMUSG00000024913.16, intron 21 of 22) -10851 ENSMUSG00000024908.15 ENSMUSG00000024908 ENSMUST00000226109 Ppp6r3 protein_coding Interval_85388 chr19 25406303 25407473 + 0 NA exon (ENSMUSG00000032702.16, exon 1 of 6) protein_coding-exon (ENSMUSG00000032702.16, exon 1 of 6) -15351 ENSMUSG00000032702.16 ENSMUSG00000032702 ENSMUST00000155788 Kank1 protein_coding Interval_42421 chr13 13425998 13426958 + 0 NA Intergenic Intergenic -7309 ENSMUSG00000094865.2 ENSMUSG00000094865 ENSMUST00000179046 Gm7426 processed_pseudogene Interval_6202 chr1 101678540 101678860 + 0 NA Intergenic Intergenic 75843 ENSMUSG00000100065.1 ENSMUSG00000100065 ENSMUST00000189423 Gm18969 processed_pseudogene Interval_91310 chr2 37672018 37672248 + 0 NA promoter-TSS (ENSMUSG00000083745.1) processed_pseudogene-promoter-TSS (ENSMUSG00000083745.1) -75 ENSMUSG00000083745.1 ENSMUSG00000083745 ENSMUST00000121230 Gm13543 processed_pseudogene Interval_132609 chr5 146719793 146720893 + 0 NA Intergenic Intergenic 13721 ENSMUSG00000106020.1 ENSMUSG00000106020 ENSMUST00000197707 4930573C15Rik lincRNA Interval_70875 chr17 15520603 15520871 + 0 NA TTS (ENSMUSG00000014771.13) protein_coding-TTS (ENSMUSG00000014771.13) 6376 ENSMUSG00000014771.13 ENSMUSG00000014771 ENSMUST00000137233 Pdcd2 protein_coding Interval_126611 chr5 90909110 90910436 + 0 NA Intergenic Intergenic 5900 ENSMUSG00000058427.10 ENSMUSG00000058427 ENSMUST00000075433 Cxcl2 protein_coding Interval_8081 chr1 135606946 135607791 + 0 NA exon (ENSMUSG00000009418.16, exon 2 of 2) protein_coding-exon (ENSMUSG00000009418.16, exon 2 of 2) 22595 ENSMUSG00000054412.5 ENSMUSG00000054412 ENSMUST00000067468 Gm4793 antisense Interval_156460 chr8 48424902 48426181 + 0 NA intron (ENSMUSG00000031561.16, intron 2 of 26) protein_coding-intron (ENSMUSG00000031561.16, intron 2 of 28) 129772 ENSMUSG00000031561.16 ENSMUSG00000031561 ENSMUST00000211812 Tenm3 protein_coding Interval_28056 chr11 72537856 72538876 + 0 NA exon (ENSMUSG00000020798.14, exon 4 of 11) protein_coding-exon (ENSMUSG00000020798.14, exon 4 of 11) 34964 ENSMUSG00000081675.1 ENSMUSG00000081675 ENSMUST00000120676 Gm12712 processed_pseudogene Interval_28982 chr11 79710452 79712044 + 0 NA promoter-TSS (ENSMUSG00000065395.1) miRNA-promoter-TSS (ENSMUSG00000065395.1) -721 ENSMUSG00000065395.1 ENSMUSG00000065395 ENSMUST00000083461 Mir193a miRNA Interval_95525 chr2 111326185 111326558 + 0 NA promoter-TSS (ENSMUSG00000095156.2) protein_coding-promoter-TSS (ENSMUSG00000095156.2) -149 ENSMUSG00000095156.2 ENSMUSG00000095156 ENSMUST00000090326 Olfr1281 protein_coding Interval_15287 chr10 44100630 44101032 + 0 NA intron (ENSMUSG00000019866.15, intron 1 of 21) protein_coding-intron (ENSMUSG00000019866.15, intron 1 of 21) -42053 ENSMUSG00000019866.15 ENSMUSG00000019866 ENSMUST00000239010 Crybg1 protein_coding Interval_40050 chr12 100866940 100867394 + 0 NA promoter-TSS (ENSMUSG00000021185.16) protein_coding-promoter-TSS (ENSMUSG00000021185.16) -2728 ENSMUSG00000082604.3 ENSMUSG00000082604 ENSMUST00000117972 Gm8482 processed_pseudogene Interval_151650 chr7 125690491 125690796 + 0 NA TTS (ENSMUSG00000032777.9) protein_coding-TTS (ENSMUSG00000032777.9) -17274 ENSMUSG00000032743.15 ENSMUSG00000032743 ENSMUST00000155059 D430042O09Rik protein_coding Interval_148817 chr7 88544337 88544637 + 0 NA Intergenic Intergenic -13589 ENSMUSG00000069972.6 ENSMUSG00000069972 ENSMUST00000182017 Rps13-ps2 processed_pseudogene Interval_150918 chr7 116336104 116336388 + 0 NA exon (ENSMUSG00000108738.1, exon 1 of 1) antisense-exon (ENSMUSG00000108738.1, exon 1 of 1) 1991 ENSMUSG00000108738.1 ENSMUSG00000108738 ENSMUST00000206492 Gm44777 antisense Interval_148042 chr7 78782579 78784059 + 0 NA promoter-TSS (ENSMUSG00000030612.6) protein_coding-promoter-TSS (ENSMUSG00000030612.6) -51 ENSMUSG00000030611.10 ENSMUSG00000030611 ENSMUST00000132922 Mrps11 protein_coding Interval_152753 chr7 137224566 137225685 + 0 NA exon (ENSMUSG00000010476.14, exon 1 of 1) protein_coding-exon (ENSMUSG00000010476.14, exon 1 of 1) -9558 ENSMUSG00000109722.1 ENSMUSG00000109722 ENSMUST00000211070 Gm10578 antisense Interval_79097 chr18 24513056 24513469 + 0 NA intron (ENSMUSG00000040446.4, intron 1 of 5) protein_coding-intron (ENSMUSG00000040446.4, intron 1 of 6) 16832 ENSMUSG00000040446.4 ENSMUSG00000040446 ENSMUST00000234403 Rprd1a protein_coding Interval_60661 chr15 75997676 75999011 + 0 NA promoter-TSS (ENSMUSG00000063704.13) protein_coding-promoter-TSS (ENSMUSG00000063704.13) -28 ENSMUSG00000063704.13 ENSMUSG00000063704 ENSMUST00000230929 Mapk15 protein_coding Interval_143580 chr7 12955005 12955383 + 0 NA intron (ENSMUSG00000097115.2, intron 1 of 1) lincRNA-intron (ENSMUSG00000097115.2, intron 1 of 1) -4105 ENSMUSG00000102084.1 ENSMUSG00000102084 ENSMUST00000186106 Gm29638 lincRNA Interval_98133 chr2 148654553 148655704 + 0 NA Intergenic Intergenic -17473 ENSMUSG00000036992.10 ENSMUSG00000036992 ENSMUST00000047177 Nxt1 protein_coding Interval_75546 chr17 67939026 67939515 + 0 NA intron (ENSMUSG00000024043.13, intron 1 of 17) protein_coding-intron (ENSMUSG00000024043.13, intron 1 of 17) -66222 ENSMUSG00000024043.13 ENSMUSG00000024043 ENSMUST00000170581 Arhgap28 protein_coding Interval_19238 chr10 95685095 95685362 + 0 NA Intergenic Intergenic -11839 ENSMUSG00000074780.2 ENSMUSG00000074780 ENSMUST00000099328 Anapc15-ps protein_coding Interval_9609 chr1 160203846 160204731 + 0 NA intron (ENSMUSG00000014226.10, intron 5 of 5) protein_coding-intron (ENSMUSG00000014226.10, intron 5 of 5) 8517 ENSMUSG00000014226.10 ENSMUSG00000014226 ENSMUST00000194167 Cacybp protein_coding Interval_171201 chr9 115152240 115152748 + 0 NA intron (ENSMUSG00000040875.12, intron 1 of 4) protein_coding-intron (ENSMUSG00000040875.12, intron 2 of 9) 33564 ENSMUSG00000098127.1 ENSMUSG00000098127 ENSMUST00000183244 Gm4665 antisense Interval_62428 chr15 92526670 92527554 + 0 NA intron (ENSMUSG00000036218.16, intron 1 of 2) protein_coding-intron (ENSMUSG00000036218.16, intron 3 of 9) 178843 ENSMUSG00000115858.1 ENSMUSG00000115858 ENSMUST00000230757 4930588J15Rik antisense Interval_105093 chr3 81109768 81110098 + 0 NA intron (ENSMUSG00000028019.9, intron 1 of 5) protein_coding-intron (ENSMUSG00000028019.9, intron 1 of 5) -69496 ENSMUSG00000085106.1 ENSMUSG00000085106 ENSMUST00000146657 Gm16000 antisense Interval_115460 chr4 99147869 99148956 + 0 NA intron (ENSMUSG00000086498.1, intron 2 of 2) lincRNA-intron (ENSMUSG00000086498.1, intron 2 of 2) 13230 ENSMUSG00000086498.1 ENSMUSG00000086498 ENSMUST00000132337 Gm12681 lincRNA Interval_115152 chr4 91651765 91652366 + 0 NA TTS (ENSMUSG00000086042.1) lincRNA-TTS (ENSMUSG00000086042.1) 5750 ENSMUSG00000086042.1 ENSMUSG00000086042 ENSMUST00000123606 Gm12670 lincRNA Interval_66627 chr16 35733315 35734711 + 0 NA exon (ENSMUSG00000022848.8, exon 4 of 9) protein_coding-exon (ENSMUSG00000022848.8, exon 4 of 9) -11780 ENSMUSG00000087793.1 ENSMUSG00000087793 ENSMUST00000157168 Gm25967 snoRNA Interval_19235 chr10 95667312 95667917 + 0 NA Intergenic Intergenic 5775 ENSMUSG00000074780.2 ENSMUSG00000074780 ENSMUST00000099328 Anapc15-ps protein_coding Interval_163359 chr9 21066454 21068059 + 0 NA promoter-TSS (ENSMUSG00000079681.3) protein_coding-promoter-TSS (ENSMUSG00000079681.3) -4461 ENSMUSG00000079681.3 ENSMUSG00000079681 ENSMUST00000216967 Zglp1 protein_coding Interval_57183 chr15 7186315 7186774 + 0 NA intron (ENSMUSG00000054263.12, intron 16 of 19) protein_coding-intron (ENSMUSG00000054263.12, intron 16 of 19) 68224 ENSMUSG00000042961.13 ENSMUSG00000042961 ENSMUST00000159726 Egflam protein_coding Interval_136804 chr6 60547960 60548279 + 0 NA Intergenic Intergenic -38659 ENSMUSG00000108003.1 ENSMUSG00000108003 ENSMUST00000204603 Gm35386 lincRNA Interval_57361 chr15 9748452 9749179 + 0 NA promoter-TSS (ENSMUSG00000072663.12) protein_coding-promoter-TSS (ENSMUSG00000072663.12) 23 ENSMUSG00000072663.12 ENSMUSG00000072663 ENSMUST00000159368 Spef2 protein_coding Interval_105626 chr3 88220579 88221632 + 0 NA exon (ENSMUSG00000097156.7, exon 2 of 2) lincRNA-exon (ENSMUSG00000097156.7, exon 2 of 2) -5409 ENSMUSG00000092876.1 ENSMUSG00000092876 ENSMUST00000175135 Gm25641 miRNA Interval_13391 chr10 17722002 17724464 + 0 NA promoter-TSS (ENSMUSG00000039910.10) protein_coding-promoter-TSS (ENSMUSG00000039910.10) 0 ENSMUSG00000039910.10 ENSMUSG00000039910 ENSMUST00000218370 Cited2 protein_coding Interval_48270 chr13 97574297 97574500 + 0 NA intron (ENSMUSG00000110235.1, intron 2 of 2) lincRNA-intron (ENSMUSG00000110235.1, intron 2 of 2) 14372 ENSMUSG00000110235.1 ENSMUSG00000110235 ENSMUST00000210897 Gm5086 lincRNA Interval_111776 chr4 28486407 28486610 + 0 NA promoter-TSS (ENSMUSG00000082359.1) processed_pseudogene-promoter-TSS (ENSMUSG00000082359.1) -50 ENSMUSG00000082359.1 ENSMUSG00000082359 ENSMUST00000117755 Gm11908 processed_pseudogene Interval_44387 chr13 44554540 44554955 + 0 NA intron (ENSMUSG00000113977.1, intron 1 of 3) lincRNA-intron (ENSMUSG00000113977.1, intron 1 of 3) 13921 ENSMUSG00000113977.1 ENSMUSG00000113977 ENSMUST00000222558 Gm34276 lincRNA Interval_65734 chr16 26339471 26339695 + 0 NA Intergenic Intergenic 21211 ENSMUSG00000022512.3 ENSMUSG00000022512 ENSMUST00000232215 Cldn1 protein_coding Interval_68382 chr16 75294067 75294922 + 0 NA Intergenic Intergenic 104780 ENSMUSG00000116867.1 ENSMUSG00000116867 ENSMUST00000232003 Gm49677 TEC Interval_1528 chr1 24782889 24783990 + 0 NA Intergenic Intergenic 104809 ENSMUSG00000073725.8 ENSMUSG00000073725 ENSMUST00000190195 Lmbrd1 protein_coding Interval_40730 chr12 107977647 107978188 + 0 NA intron (ENSMUSG00000048251.15, intron 2 of 3) protein_coding-intron (ENSMUSG00000048251.15, intron 2 of 3) 25497 ENSMUSG00000048251.15 ENSMUSG00000048251 ENSMUST00000109891 Bcl11b protein_coding Interval_66134 chr16 31883638 31884859 + 0 NA intron (ENSMUSG00000022780.5, intron 4 of 15) protein_coding-intron (ENSMUSG00000022780.5, intron 4 of 15) 5438 ENSMUSG00000022780.5 ENSMUSG00000022780 ENSMUST00000023464 Meltf protein_coding Interval_37624 chr12 70494446 70496182 + 0 NA Intergenic Intergenic 16699 ENSMUSG00000113944.1 ENSMUSG00000113944 ENSMUST00000222328 Gm48847 lincRNA Interval_158233 chr8 80298171 80298691 + 0 NA Intergenic Intergenic 103232 ENSMUSG00000110294.1 ENSMUSG00000110294 ENSMUST00000211276 Gm45430 lincRNA Interval_165725 chr9 51908886 51909551 + 0 NA Intergenic Intergenic -5209 ENSMUSG00000111836.1 ENSMUSG00000111836 ENSMUST00000213311 4933407I05Rik lincRNA Interval_153494 chr7 145201856 145202445 + 0 NA intron (ENSMUSG00000048677.9, intron 19 of 20) protein_coding-intron (ENSMUSG00000048677.9, intron 19 of 20) 5930 ENSMUSG00000109305.1 ENSMUSG00000109305 ENSMUST00000207841 Smim38 protein_coding Interval_56298 chr14 116879567 116880570 + 0 NA Intergenic Intergenic -45463 ENSMUSG00000058571.11 ENSMUSG00000058571 ENSMUST00000078849 Gpc6 protein_coding Interval_147991 chr7 76427258 76427642 + 0 NA intron (ENSMUSG00000025754.11, intron 15 of 22) protein_coding-intron (ENSMUSG00000025754.11, intron 9 of 12) -181512 ENSMUSG00000098009.1 ENSMUSG00000098009 ENSMUST00000182353 Gm5597 processed_pseudogene Interval_104797 chr3 73571932 73573466 + 0 NA intron (ENSMUSG00000103428.1, intron 4 of 4) lincRNA-intron (ENSMUSG00000103428.1, intron 4 of 4) -91048 ENSMUSG00000102362.1 ENSMUSG00000102362 ENSMUST00000194514 4930509J09Rik lincRNA Interval_90281 chr2 29512577 29512851 + 0 NA intron (ENSMUSG00000026799.15, intron 5 of 6) protein_coding-intron (ENSMUSG00000026799.15, intron 6 of 7) 14502 ENSMUSG00000082413.1 ENSMUSG00000082413 ENSMUST00000117074 Gm13401 processed_pseudogene Interval_4103 chr1 68303393 68305328 + 0 NA intron (ENSMUSG00000062209.15, intron 14 of 18) protein_coding-intron (ENSMUSG00000062209.15, intron 14 of 27) -10634 ENSMUSG00000083795.1 ENSMUSG00000083795 ENSMUST00000117740 Gm15670 processed_pseudogene Interval_26492 chr11 58138658 58139197 + 0 NA intron (ENSMUSG00000037275.14, intron 18 of 27) protein_coding-intron (ENSMUSG00000037275.14, intron 18 of 27) 12859 ENSMUSG00000087629.1 ENSMUSG00000087629 ENSMUST00000129126 Gm12246 antisense Interval_80160 chr18 37934923 37935757 + 0 NA promoter-TSS (ENSMUSG00000024456.16) protein_coding-promoter-TSS (ENSMUSG00000024456.16) 15522 ENSMUSG00000117686.1 ENSMUSG00000117686 ENSMUST00000236273 Gm50122 processed_pseudogene Interval_113589 chr4 56872744 56873255 + 0 NA exon (ENSMUSG00000055296.14, exon 18 of 18) protein_coding-exon (ENSMUSG00000055296.14, exon 18 of 18) 22299 ENSMUSG00000065544.1 ENSMUSG00000065544 ENSMUST00000083610 Mir32 miRNA Interval_8769 chr1 150779964 150780569 + 0 NA intron (ENSMUSG00000066842.18, intron 11 of 105) protein_coding-intron (ENSMUSG00000066842.18, intron 11 of 106) 154967 ENSMUSG00000093650.2 ENSMUSG00000093650 ENSMUST00000177268 Gm20631 antisense Interval_34909 chr12 13248604 13249709 + 0 NA promoter-TSS (ENSMUSG00000037149.10) protein_coding-promoter-TSS (ENSMUSG00000037149.10) 7 ENSMUSG00000037149.10 ENSMUSG00000037149 ENSMUST00000221623 Ddx1 protein_coding Interval_129251 chr5 118443923 118446349 + 0 NA Intergenic Intergenic -26318 ENSMUSG00000093041.1 ENSMUSG00000093041 ENSMUST00000175300 Gm26455 miRNA Interval_133664 chr6 8245422 8246870 + 0 NA Intergenic Intergenic 12994 ENSMUSG00000012483.4 ENSMUSG00000012483 ENSMUST00000159594 Rpa3 protein_coding Interval_110172 chr3 153952402 153953193 + 0 NA Intergenic Intergenic -14988 ENSMUSG00000062908.12 ENSMUSG00000062908 ENSMUST00000135724 Acadm protein_coding Interval_70214 chr17 6757261 6758563 + 0 NA intron (ENSMUSG00000052397.8, intron 2 of 12) protein_coding-intron (ENSMUSG00000052397.8, intron 2 of 12) -15091 ENSMUSG00000052397.8 ENSMUSG00000052397 ENSMUST00000131131 Ezr protein_coding Interval_151566 chr7 123835546 123836000 + 0 NA Intergenic Intergenic 106436 ENSMUSG00000084484.1 ENSMUSG00000084484 ENSMUST00000122535 Gm23788 snRNA Interval_56377 chr14 118225342 118226719 + 0 NA Intergenic Intergenic 11000 ENSMUSG00000061517.8 ENSMUSG00000061517 ENSMUST00000170662 Sox21 protein_coding Interval_20391 chr10 117275543 117276429 + 0 NA Intergenic Intergenic 6335 ENSMUSG00000069516.8 ENSMUSG00000069516 ENSMUST00000092163 Lyz2 protein_coding Interval_153053 chr7 141078086 141080400 + 0 NA promoter-TSS (ENSMUSG00000054065.12) protein_coding-promoter-TSS (ENSMUSG00000054065.12) -532 ENSMUSG00000054065.12 ENSMUSG00000054065 ENSMUST00000161142 Pkp3 protein_coding Interval_37420 chr12 68069160 68069403 + 0 NA Intergenic Intergenic -2244 ENSMUSG00000113526.1 ENSMUSG00000113526 ENSMUST00000220843 Gm47453 lincRNA Interval_67852 chr16 57945079 57945885 + 0 NA intron (ENSMUSG00000116920.1, intron 2 of 3) lincRNA-intron (ENSMUSG00000116920.1, intron 2 of 3) 42549 ENSMUSG00000104285.1 ENSMUSG00000104285 ENSMUST00000194055 Gm37458 TEC Interval_162833 chr9 9949354 9949634 + 0 NA intron (ENSMUSG00000039488.15, intron 7 of 18) protein_coding-intron (ENSMUSG00000039488.15, intron 11 of 22) 55063 ENSMUSG00000098408.1 ENSMUSG00000098408 ENSMUST00000183808 Mir6237 miRNA Interval_61828 chr15 84463542 84464411 + 0 NA Intergenic Intergenic -16879 ENSMUSG00000062760.11 ENSMUSG00000062760 ENSMUST00000186527 Shisal1 protein_coding Interval_117432 chr4 123648889 123649394 + 0 NA intron (ENSMUSG00000028649.21, intron 1 of 97) protein_coding-intron (ENSMUSG00000028649.21, intron 1 of 92) -16740 ENSMUSG00000087307.1 ENSMUSG00000087307 ENSMUST00000138861 Gm12925 antisense Interval_39895 chr12 99411780 99413182 + 0 NA exon (ENSMUSG00000033713.12, exon 1 of 3) protein_coding-exon (ENSMUSG00000033713.12, exon 1 of 3) -35233 ENSMUSG00000113610.1 ENSMUSG00000113610 ENSMUST00000223488 Gm47132 TEC Interval_137604 chr6 75145852 75146611 + 0 NA Intergenic Intergenic 41937 ENSMUSG00000107467.1 ENSMUSG00000107467 ENSMUST00000204463 Gm8992 processed_pseudogene Interval_63258 chr15 99972040 99973719 + 0 NA promoter-TSS (ENSMUSG00000023025.16) protein_coding-promoter-TSS (ENSMUSG00000023025.16) -39 ENSMUSG00000023025.16 ENSMUSG00000023025 ENSMUST00000231128 Larp4 protein_coding Interval_148212 chr7 79890482 79891362 + 0 NA intron (ENSMUSG00000063801.7, intron 5 of 5) protein_coding-intron (ENSMUSG00000063801.7, intron 4 of 5) -28047 ENSMUSG00000097685.2 ENSMUSG00000097685 ENSMUST00000205705 Gm26646 antisense Interval_166152 chr9 57091358 57091559 + 0 NA intron (ENSMUSG00000042557.14, intron 4 of 21) protein_coding-intron (ENSMUSG00000042557.14, intron 2 of 19) 19418 ENSMUSG00000042557.14 ENSMUSG00000042557 ENSMUST00000167963 Sin3a protein_coding Interval_153179 chr7 142134606 142134843 + 0 NA TTS (ENSMUSG00000110091.1) protein_coding-TTS (ENSMUSG00000110091.1) 1310 ENSMUSG00000110091.1 ENSMUSG00000110091 ENSMUST00000211350 Gm39115 protein_coding Interval_97037 chr2 130696743 130698352 + 0 NA promoter-TSS (ENSMUSG00000074796.10) protein_coding-promoter-TSS (ENSMUSG00000074796.10) 8149 ENSMUSG00000084694.1 ENSMUSG00000084694 ENSMUST00000122745 Gm24893 misc_RNA Interval_131326 chr5 136480350 136480615 + 0 NA intron (ENSMUSG00000029705.17, intron 1 of 20) protein_coding-intron (ENSMUSG00000029705.17, intron 2 of 23) 55995 ENSMUSG00000104369.1 ENSMUSG00000104369 ENSMUST00000192800 Gm38082 TEC Interval_34967 chr12 15832686 15833078 + 0 NA intron (ENSMUSG00000097580.1, intron 1 of 2) bidirectional_promoter_lncRNA-intron (ENSMUSG00000097580.1, intron 1 of 2) 15879 ENSMUSG00000097580.1 ENSMUSG00000097580 ENSMUST00000180759 Gm5432 bidirectional_promoter_lncRNA Interval_46053 chr13 60618262 60619144 + 0 NA intron (ENSMUSG00000021559.14, intron 2 of 26) protein_coding-intron (ENSMUSG00000021559.14, intron 2 of 26) -4264 ENSMUSG00000114501.1 ENSMUSG00000114501 ENSMUST00000225376 Gm48582 TEC Interval_165611 chr9 50416929 50417208 + 0 NA Intergenic Intergenic -72100 ENSMUSG00000058443.5 ENSMUSG00000058443 ENSMUST00000076364 Rpl10-ps3 protein_coding Interval_155298 chr8 31067075 31068520 + 0 NA Intergenic Intergenic -21841 ENSMUSG00000039661.14 ENSMUSG00000039661 ENSMUST00000160700 Dusp26 protein_coding Interval_112675 chr4 43992138 43993956 + 0 NA Intergenic Intergenic 9564 ENSMUSG00000070999.2 ENSMUSG00000070999 ENSMUST00000095107 Ccin protein_coding Interval_74799 chr17 56609365 56610237 + 0 NA promoter-TSS (ENSMUSG00000049760.6) protein_coding-promoter-TSS (ENSMUSG00000049760.6) -119 ENSMUSG00000049760.6 ENSMUSG00000049760 ENSMUST00000233386 Micos13 protein_coding Interval_113285 chr4 53116080 53116258 + 0 NA intron (ENSMUSG00000015243.4, intron 5 of 49) protein_coding-intron (ENSMUSG00000015243.4, intron 5 of 49) -75243 ENSMUSG00000015243.4 ENSMUSG00000015243 ENSMUST00000149127 Abca1 protein_coding Interval_129918 chr5 123057520 123058590 + 0 NA Intergenic Intergenic -8187 ENSMUSG00000080836.1 ENSMUSG00000080836 ENSMUST00000119611 Gm6444 processed_pseudogene Interval_107797 chr3 115267382 115268001 + 0 NA Intergenic Intergenic -95642 ENSMUSG00000106510.1 ENSMUSG00000106510 ENSMUST00000198707 Gm18429 processed_pseudogene Interval_119796 chr4 140043590 140044374 + 0 NA intron (ENSMUSG00000040972.8, intron 4 of 9) protein_coding-intron (ENSMUSG00000040972.8, intron 4 of 9) -75956 ENSMUSG00000078234.6 ENSMUSG00000078234 ENSMUST00000105031 Klhdc7a protein_coding Interval_104753 chr3 70460101 70461433 + 0 NA Intergenic Intergenic 47448 ENSMUSG00000102663.1 ENSMUSG00000102663 ENSMUST00000193699 Gm6631 processed_pseudogene Interval_133579 chr6 7023662 7024430 + 0 NA intron (ENSMUSG00000042505.6, intron 1 of 1) protein_coding-intron (ENSMUSG00000042505.6, intron 1 of 1) 68039 ENSMUSG00000042505.6 ENSMUSG00000042505 ENSMUST00000123848 Sdhaf3 protein_coding Interval_83972 chr19 5874762 5875621 + 0 NA promoter-TSS (ENSMUSG00000024816.12) protein_coding-promoter-TSS (ENSMUSG00000024816.12) 48 ENSMUSG00000024816.12 ENSMUSG00000024816 ENSMUST00000155227 Frmd8 protein_coding Interval_123574 chr5 33573259 33573675 + 0 NA Intergenic Intergenic 55595 ENSMUSG00000037339.17 ENSMUSG00000037339 ENSMUST00000140043 Fam53a protein_coding Interval_95106 chr2 103948613 103948953 + 0 NA Intergenic Intergenic -9212 ENSMUSG00000032698.15 ENSMUSG00000032698 ENSMUST00000133210 Lmo2 protein_coding Interval_129095 chr5 117375215 117375685 + 0 NA promoter-TSS (ENSMUSG00000029364.15) protein_coding-promoter-TSS (ENSMUSG00000029364.15) -202 ENSMUSG00000029364.15 ENSMUSG00000029364 ENSMUST00000136895 Wsb2 protein_coding Interval_99491 chr2 162507687 162508435 + 0 NA intron (ENSMUSG00000053141.16, intron 1 of 29) protein_coding-intron (ENSMUSG00000053141.16, intron 1 of 30) 117248 ENSMUSG00000084919.1 ENSMUSG00000084919 ENSMUST00000151688 Ptprtos antisense Interval_71562 chr17 24574698 24574893 + 0 NA exon (ENSMUSG00000032855.6, exon 15 of 46) protein_coding-exon (ENSMUSG00000032855.6, exon 15 of 46) -12824 ENSMUSG00000032855.6 ENSMUSG00000032855 ENSMUST00000228581 Pkd1 protein_coding Interval_142297 chr6 140514682 140515034 + 0 NA intron (ENSMUSG00000030231.11, intron 1 of 9) protein_coding-intron (ENSMUSG00000030231.11, intron 3 of 30) -16105 ENSMUSG00000084477.1 ENSMUSG00000084477 ENSMUST00000122528 Gm25780 misc_RNA Interval_32419 chr11 107447015 107449884 + 0 NA intron (ENSMUSG00000040430.18, intron 1 of 9) protein_coding-intron (ENSMUSG00000040430.18, intron 1 of 9) 20173 ENSMUSG00000087113.1 ENSMUSG00000087113 ENSMUST00000136927 Gm11714 processed_transcript Interval_8506 chr1 140356688 140357060 + 0 NA intron (ENSMUSG00000052726.16, intron 3 of 27) protein_coding-intron (ENSMUSG00000052726.16, intron 3 of 26) 90387 ENSMUSG00000102698.1 ENSMUSG00000102698 ENSMUST00000195546 Gm37777 TEC Interval_79359 chr18 31171516 31172569 + 0 NA intron (ENSMUSG00000057455.12, intron 2 of 3) protein_coding-intron (ENSMUSG00000057455.12, intron 2 of 3) 40690 ENSMUSG00000057455.12 ENSMUSG00000057455 ENSMUST00000139924 Rit2 protein_coding Interval_144722 chr7 27768297 27769363 + 0 NA intron (ENSMUSG00000109143.1, intron 1 of 2) transcribed_unprocessed_pseudogene-intron (ENSMUSG00000109143.1, intron 1 of 2) -1675 ENSMUSG00000109143.1 ENSMUSG00000109143 ENSMUST00000208942 Gm10046 transcribed_unprocessed_pseudogene Interval_77600 chr17 92776422 92776902 + 0 NA Intergenic Intergenic -57586 ENSMUSG00000117625.1 ENSMUSG00000117625 ENSMUST00000234136 Gm21018 processed_pseudogene Interval_162584 chr9 5146721 5147333 + 0 NA Intergenic Intergenic 35628 ENSMUSG00000084690.1 ENSMUSG00000084690 ENSMUST00000122741 Gm24896 snoRNA Interval_84092 chr19 7164702 7166538 + 0 NA intron (ENSMUSG00000036278.7, intron 3 of 10) protein_coding-intron (ENSMUSG00000036278.7, intron 3 of 10) 40155 ENSMUSG00000024767.11 ENSMUSG00000024767 ENSMUST00000123743 Otub1 protein_coding Interval_157248 chr8 68452234 68452601 + 0 NA intron (ENSMUSG00000036356.15, intron 5 of 6) protein_coding-intron (ENSMUSG00000036356.15, intron 4 of 9) -4731 ENSMUSG00000087489.1 ENSMUSG00000087489 ENSMUST00000132076 Gm15656 antisense Interval_89780 chr2 25400617 25401060 + 0 NA TTS (ENSMUSG00000015085.8) protein_coding-TTS (ENSMUSG00000015085.8) -2610 ENSMUSG00000015094.16 ENSMUSG00000015094 ENSMUST00000138651 Npdc1 protein_coding Interval_170669 chr9 109976778 109977271 + 0 NA intron (ENSMUSG00000032479.15, intron 1 of 3) protein_coding-intron (ENSMUSG00000032479.15, intron 1 of 18) 6591 ENSMUSG00000106208.1 ENSMUSG00000106208 ENSMUST00000200117 Gm4734 processed_pseudogene Interval_92805 chr2 65566480 65568094 + 0 NA exon (ENSMUSG00000057182.15, exon 1 of 27) protein_coding-exon (ENSMUSG00000057182.15, exon 1 of 27) -42629 ENSMUSG00000057182.15 ENSMUSG00000057182 ENSMUST00000126837 Scn3a protein_coding Interval_75087 chr17 63183467 63183836 + 0 NA intron (ENSMUSG00000023965.13, intron 4 of 5) protein_coding-intron (ENSMUSG00000023965.13, intron 7 of 8) -19087 ENSMUSG00000088853.1 ENSMUSG00000088853 ENSMUST00000158228 Gm24730 snoRNA Interval_173822 chrX 105112720 105112930 + 0 NA intron (ENSMUSG00000031226.13, intron 5 of 5) protein_coding-intron (ENSMUSG00000031226.13, intron 5 of 5) -7553 ENSMUSG00000031227.8 ENSMUSG00000031227 ENSMUST00000033578 Magee1 protein_coding Interval_54115 chr14 65425377 65425742 + 0 NA promoter-TSS (ENSMUSG00000045731.6) protein_coding-promoter-TSS (ENSMUSG00000045731.6) -399 ENSMUSG00000045731.6 ENSMUSG00000045731 ENSMUST00000224594 Pnoc protein_coding Interval_124924 chr5 60881881 60883513 + 0 NA Intergenic Intergenic -60270 ENSMUSG00000104775.1 ENSMUSG00000104775 ENSMUST00000197863 Gm8182 processed_pseudogene Interval_17589 chr10 78028907 78029239 + 0 NA TTS (ENSMUSG00000000731.15) protein_coding-TTS (ENSMUSG00000000731.15) 14507 ENSMUSG00000000731.15 ENSMUSG00000000731 ENSMUST00000141255 Aire protein_coding Interval_53531 chr14 58510592 58511397 + 0 NA Intergenic Intergenic 139406 ENSMUSG00000077201.1 ENSMUSG00000077201 ENSMUST00000104013 Gm25614 snoRNA Interval_114741 chr4 84661148 84663321 + 0 NA intron (ENSMUSG00000028487.18, intron 1 of 5) protein_coding-intron (ENSMUSG00000028487.18, intron 1 of 7) -35629 ENSMUSG00000081775.1 ENSMUSG00000081775 ENSMUST00000119869 Gm12420 processed_pseudogene Interval_63919 chr16 4567354 4568411 + 0 NA Intergenic Intergenic -9099 ENSMUSG00000005718.8 ENSMUSG00000005718 ENSMUST00000229956 Tfap4 protein_coding Interval_119941 chr4 141033982 141034558 + 0 NA intron (ENSMUSG00000040860.16, intron 16 of 34) protein_coding-intron (ENSMUSG00000040860.16, intron 16 of 34) 23852 ENSMUSG00000060572.17 ENSMUSG00000060572 ENSMUST00000071977 Mfap2 protein_coding Interval_42715 chr13 18485490 18486910 + 0 NA Intergenic Intergenic -88514 ENSMUSG00000009734.18 ENSMUSG00000009734 ENSMUST00000222900 Pou6f2 protein_coding Interval_139288 chr6 97918019 97919603 + 0 NA intron (ENSMUSG00000035158.15, intron 1 of 9) protein_coding-intron (ENSMUSG00000035158.15, intron 1 of 9) -28272 ENSMUSG00000083086.1 ENSMUSG00000083086 ENSMUST00000118062 Gm15531 processed_pseudogene Interval_9097 chr1 153570459 153570703 + 0 NA Intergenic Intergenic -20870 ENSMUSG00000042684.8 ENSMUSG00000042684 ENSMUST00000187747 Npl protein_coding Interval_168247 chr9 78173649 78175319 + 0 NA TTS (ENSMUSG00000065037.1) misc_RNA-TTS (ENSMUSG00000065037.1) 1149 ENSMUSG00000065037.1 ENSMUSG00000065037 ENSMUST00000083103 Rn7sk misc_RNA Interval_86291 chr19 38428886 38429665 + 0 NA Intergenic Intergenic 33234 ENSMUSG00000044026.3 ENSMUSG00000044026 ENSMUST00000236865 Slc35g1 protein_coding Interval_22607 chr11 12258650 12260089 + 0 NA intron (ENSMUSG00000020173.17, intron 7 of 11) protein_coding-intron (ENSMUSG00000020173.17, intron 10 of 14) -62906 ENSMUSG00000086584.8 ENSMUSG00000086584 ENSMUST00000174550 Gm12002 antisense Interval_138255 chr6 86639643 86640098 + 0 NA Intergenic Intergenic 11706 ENSMUSG00000033508.7 ENSMUSG00000033508 ENSMUST00000043400 Asprv1 protein_coding Interval_136838 chr6 61203519 61203878 + 0 NA intron (ENSMUSG00000039578.17, intron 1 of 1) protein_coding-intron (ENSMUSG00000039578.17, intron 1 of 10) -29173 ENSMUSG00000097924.2 ENSMUSG00000097924 ENSMUST00000181288 A730020E08Rik bidirectional_promoter_lncRNA Interval_97418 chr2 135990849 135991197 + 0 NA intron (ENSMUSG00000039943.16, intron 30 of 36) protein_coding-intron (ENSMUSG00000039943.16, intron 29 of 35) 35228 ENSMUSG00000064444.1 ENSMUSG00000064444 ENSMUST00000082510 Gm26227 snRNA Interval_10709 chr1 173400422 173400795 + 0 NA intron (ENSMUSG00000037860.15, intron 2 of 11) protein_coding-intron (ENSMUSG00000037860.15, intron 2 of 11) -32960 ENSMUSG00000005338.13 ENSMUSG00000005338 ENSMUST00000126963 Cadm3 protein_coding Interval_143 GL456387.1 11127 11385 + 0 NA NA NA NA NA Interval_130534 chr5 128613385 128613582 + 0 NA Intergenic Intergenic 12639 ENSMUSG00000081683.5 ENSMUSG00000081683 ENSMUST00000117102 Fzd10 protein_coding Interval_95197 chr2 104702968 104703428 + 0 NA intron (ENSMUSG00000027175.10, intron 2 of 4) protein_coding-intron (ENSMUSG00000027175.10, intron 2 of 9) 3269 ENSMUSG00000027175.10 ENSMUSG00000027175 ENSMUST00000132600 Tcp11l1 protein_coding Interval_138411 chr6 87962514 87963688 + 0 NA Intergenic Intergenic -14224 ENSMUSG00000068689.8 ENSMUSG00000068689 ENSMUST00000161787 Rps19-ps9 processed_pseudogene Interval_10207 chr1 167196203 167197686 + 0 NA Intergenic Intergenic -10556 ENSMUSG00000103333.1 ENSMUSG00000103333 ENSMUST00000192124 Gm37994 processed_pseudogene Interval_57701 chr15 16130372 16131658 + 0 NA Intergenic Intergenic 76938 ENSMUSG00000115434.1 ENSMUSG00000115434 ENSMUST00000227564 Gm6479 processed_pseudogene Interval_73797 chr17 43744304 43745082 + 0 NA intron (ENSMUSG00000023963.10, intron 9 of 10) protein_coding-intron (ENSMUSG00000023963.10, intron 10 of 11) 46330 ENSMUSG00000084474.1 ENSMUSG00000084474 ENSMUST00000122525 Gm25783 snRNA Interval_173077 chrX 70582223 70583420 + 0 NA Intergenic Intergenic 17986 ENSMUSG00000081464.1 ENSMUSG00000081464 ENSMUST00000121372 Gm14732 processed_pseudogene Interval_110481 chr3 159354566 159354771 + 0 NA Intergenic Intergenic -136750 ENSMUSG00000104864.1 ENSMUSG00000104864 ENSMUST00000197367 Gm43655 processed_pseudogene Interval_12540 chr1 195000908 195001799 + 0 NA intron (ENSMUSG00000096929.7, intron 2 of 3) processed_transcript-intron (ENSMUSG00000096929.7, intron 2 of 3) -6008 ENSMUSG00000104206.1 ENSMUSG00000104206 ENSMUST00000191885 Gm32250 lincRNA Interval_131306 chr5 136295085 136295388 + 0 NA intron (ENSMUSG00000029705.17, intron 20 of 23) protein_coding-intron (ENSMUSG00000029705.17, intron 20 of 23) 20240 ENSMUSG00000086220.1 ENSMUSG00000086220 ENSMUST00000148082 Gm16599 antisense Interval_125522 chr5 68012467 68013089 + 0 NA Intergenic Intergenic -19057 ENSMUSG00000068082.12 ENSMUSG00000068082 ENSMUST00000094715 Grxcr1 protein_coding Interval_74675 chr17 55866849 55867176 + 0 NA intron (ENSMUSG00000057835.7, intron 3 of 3) protein_coding-intron (ENSMUSG00000057835.7, intron 3 of 3) 11918 ENSMUSG00000057835.7 ENSMUSG00000057835 ENSMUST00000079642 Zfp119a protein_coding Interval_46362 chr13 64207447 64207684 + 0 NA TTS (ENSMUSG00000033102.15) protein_coding-TTS (ENSMUSG00000033102.15) -2958 ENSMUSG00000113804.1 ENSMUSG00000113804 ENSMUST00000221567 Gm46424 processed_pseudogene Interval_164732 chr9 40862680 40863586 + 0 NA Intergenic Intergenic -10994 ENSMUSG00000054360.4 ENSMUSG00000054360 ENSMUST00000067375 Bsx protein_coding Interval_92566 chr2 60729404 60731188 + 0 NA Intergenic Intergenic -56570 ENSMUSG00000026971.15 ENSMUSG00000026971 ENSMUST00000142696 Itgb6 protein_coding Interval_148903 chr7 89949255 89950001 + 0 NA Intergenic Intergenic -8429 ENSMUSG00000062797.14 ENSMUSG00000062797 ENSMUST00000207695 Hikeshi protein_coding Interval_146351 chr7 45465579 45467507 + 0 NA promoter-TSS (ENSMUSG00000003873.11) protein_coding-promoter-TSS (ENSMUSG00000003873.11) -499 ENSMUSG00000003873.11 ENSMUSG00000003873 ENSMUST00000210019 Bax protein_coding Interval_124900 chr5 59894571 59895231 + 0 NA Intergenic Intergenic 61239 ENSMUSG00000104563.1 ENSMUSG00000104563 ENSMUST00000200022 Gm43041 TEC Interval_138057 chr6 84871737 84872021 + 0 NA intron (ENSMUSG00000033769.16, intron 7 of 13) protein_coding-intron (ENSMUSG00000033769.16, intron 8 of 16) 22109 ENSMUSG00000033769.16 ENSMUSG00000033769 ENSMUST00000162786 Exoc6b protein_coding Interval_46717 chr13 69586078 69586833 + 0 NA intron (ENSMUSG00000021594.11, intron 2 of 2) protein_coding-intron (ENSMUSG00000021594.11, intron 4 of 4) 8374 ENSMUSG00000021594.11 ENSMUSG00000021594 ENSMUST00000059235 Srd5a1 protein_coding Interval_161279 chr8 119465125 119466773 + 0 NA intron (ENSMUSG00000031837.14, intron 7 of 9) protein_coding-intron (ENSMUSG00000031837.14, intron 8 of 12) 13517 ENSMUSG00000031837.14 ENSMUSG00000031837 ENSMUST00000148328 Necab2 protein_coding Interval_103009 chr3 34427448 34427741 + 0 NA exon (ENSMUSG00000092242.1, exon 2 of 2) lincRNA-exon (ENSMUSG00000092242.1, exon 2 of 2) 7503 ENSMUSG00000092242.1 ENSMUSG00000092242 ENSMUST00000174440 Gm20515 lincRNA Interval_29590 chr11 85210451 85211245 + 0 NA intron (ENSMUSG00000018481.9, intron 4 of 12) protein_coding-intron (ENSMUSG00000018481.9, intron 4 of 12) -5749 ENSMUSG00000080791.1 ENSMUSG00000080791 ENSMUST00000119676 Akirin1-ps processed_pseudogene Interval_80850 chr18 49362272 49362732 + 0 NA Intergenic Intergenic 34247 ENSMUSG00000117724.1 ENSMUSG00000117724 ENSMUST00000235797 Gm50231 processed_pseudogene Interval_89709 chr2 24904777 24906030 + 0 NA intron (ENSMUSG00000036893.17, intron 1 of 4) protein_coding-intron (ENSMUSG00000036893.17, intron 1 of 25) -11537 ENSMUSG00000102875.1 ENSMUSG00000102875 ENSMUST00000192134 Gm37139 TEC Interval_40657 chr12 106513593 106515037 + 0 NA Intergenic Intergenic 6073 ENSMUSG00000091442.1 ENSMUSG00000091442 ENSMUST00000016698 Gm17031 processed_pseudogene Interval_41890 chr13 3917507 3918684 + 0 NA promoter-TSS (ENSMUSG00000021216.7) protein_coding-promoter-TSS (ENSMUSG00000021216.7) 83 ENSMUSG00000021215.15 ENSMUSG00000021215 ENSMUST00000223258 Net1 protein_coding Interval_17895 chr10 80649421 80651014 + 0 NA intron (ENSMUSG00000003344.14, intron 1 of 5) protein_coding-intron (ENSMUSG00000003344.14, intron 1 of 8) -2507 ENSMUSG00000003344.14 ENSMUSG00000003344 ENSMUST00000131876 Btbd2 protein_coding Interval_100391 chr2 168764589 168767385 + 0 NA promoter-TSS (ENSMUSG00000027547.17) protein_coding-promoter-TSS (ENSMUSG00000027547.17) -156 ENSMUSG00000085322.2 ENSMUSG00000085322 ENSMUST00000145105 Gm14261 antisense Interval_99962 chr2 166135813 166136210 + 0 NA intron (ENSMUSG00000006800.14, intron 1 of 20) protein_coding-intron (ENSMUSG00000006800.14, intron 1 of 20) 19652 ENSMUSG00000006800.14 ENSMUSG00000006800 ENSMUST00000133395 Sulf2 protein_coding Interval_21958 chr11 5426239 5426641 + 0 NA intron (ENSMUSG00000041961.14, intron 1 of 3) protein_coding-intron (ENSMUSG00000041961.14, intron 1 of 8) -44700 ENSMUSG00000041961.14 ENSMUSG00000041961 ENSMUST00000143746 Znrf3 protein_coding Interval_56216 chr14 113182521 113183086 + 0 NA Intergenic Intergenic 53982 ENSMUSG00000115260.1 ENSMUSG00000115260 ENSMUST00000227945 Gm49005 processed_pseudogene Interval_41965 chr13 5695770 5697888 + 0 NA intron (ENSMUSG00000114053.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000114053.1, intron 1 of 2) 125029 ENSMUSG00000080562.2 ENSMUSG00000080562 ENSMUST00000116912 Gm26043 miRNA Interval_110926 chr4 10319136 10320232 + 0 NA Intergenic Intergenic 120059 ENSMUSG00000084215.3 ENSMUSG00000084215 ENSMUST00000119515 Gm11814 processed_pseudogene Interval_137447 chr6 72512107 72514195 + 0 NA TTS (ENSMUSG00000052631.15) protein_coding-TTS (ENSMUSG00000052631.15) 6885 ENSMUSG00000052631.15 ENSMUSG00000052631 ENSMUST00000159577 Sh2d6 protein_coding Interval_2139 chr1 36682652 36684796 + 0 NA promoter-TSS (ENSMUSG00000046337.17) protein_coding-promoter-TSS (ENSMUSG00000046337.17) -7886 ENSMUSG00000061518.11 ENSMUSG00000061518 ENSMUST00000193235 Cox5b protein_coding Interval_61293 chr15 80634238 80635792 + 0 NA intron (ENSMUSG00000042351.9, intron 3 of 7) protein_coding-intron (ENSMUSG00000042351.9, intron 2 of 6) -5443 ENSMUSG00000116433.1 ENSMUSG00000116433 ENSMUST00000230939 Gm49553 TEC Interval_27489 chr11 68188493 68189631 + 0 NA intron (ENSMUSG00000020903.13, intron 6 of 6) protein_coding-intron (ENSMUSG00000020903.13, intron 7 of 7) 7091 ENSMUSG00000087242.2 ENSMUSG00000087242 ENSMUST00000152781 C78197 antisense Interval_64194 chr16 8966236 8966528 + 0 NA exon (ENSMUSG00000116525.1, exon 3 of 3) lincRNA-exon (ENSMUSG00000116525.1, exon 3 of 3) 21469 ENSMUSG00000116525.1 ENSMUSG00000116525 ENSMUST00000230927 Gm30371 lincRNA Interval_155951 chr8 41249094 41249667 + 0 NA intron (ENSMUSG00000031592.10, intron 1 of 38) protein_coding-intron (ENSMUSG00000031592.10, intron 1 of 37) 9602 ENSMUSG00000031592.10 ENSMUSG00000031592 ENSMUST00000211247 Pcm1 protein_coding Interval_94285 chr2 87490449 87490755 + 0 NA TTS (ENSMUSG00000025839.3) protein_coding-TTS (ENSMUSG00000025839.3) 6491 ENSMUSG00000025839.3 ENSMUSG00000025839 ENSMUST00000141790 Pramel7 protein_coding Interval_147942 chr7 75774235 75774948 + 0 NA intron (ENSMUSG00000097415.2, intron 2 of 2) lincRNA-intron (ENSMUSG00000097415.2, intron 2 of 2) -2545 ENSMUSG00000097415.2 ENSMUSG00000097415 ENSMUST00000181224 AU020206 lincRNA Interval_167487 chr9 69907323 69907752 + 0 NA Intergenic Intergenic 82431 ENSMUSG00000101555.1 ENSMUSG00000101555 ENSMUST00000185564 Gm28731 antisense Interval_164620 chr9 40136112 40137097 + 0 NA Intergenic Intergenic -6420 ENSMUSG00000049073.7 ENSMUSG00000049073 ENSMUST00000060345 Olfr985 protein_coding Interval_6860 chr1 120154187 120154452 + 0 NA intron (ENSMUSG00000026388.15, intron 1 of 3) protein_coding-intron (ENSMUSG00000026388.15, intron 2 of 4) 3720 ENSMUSG00000026388.15 ENSMUSG00000026388 ENSMUST00000128578 3110009E18Rik protein_coding Interval_41200 chr12 111743074 111743883 + 0 NA intron (ENSMUSG00000037787.14, intron 4 of 5) protein_coding-intron (ENSMUSG00000037787.14, intron 4 of 5) -11647 ENSMUSG00000090026.1 ENSMUSG00000090026 ENSMUST00000161925 Gm15996 antisense Interval_155061 chr8 26053722 26054357 + 0 NA intron (ENSMUSG00000037234.17, intron 15 of 21) protein_coding-intron (ENSMUSG00000037234.17, intron 15 of 21) 12013 ENSMUSG00000109640.1 ENSMUSG00000109640 ENSMUST00000210389 Gm45413 TEC Interval_7429 chr1 131259743 131260993 + 0 NA exon (ENSMUSG00000102027.1, exon 2 of 2) antisense-exon (ENSMUSG00000102027.1, exon 2 of 2) 861 ENSMUSG00000102027.1 ENSMUSG00000102027 ENSMUST00000188115 Gm28914 antisense Interval_167577 chr9 70584102 70584693 + 0 NA TTS (ENSMUSG00000032212.10) protein_coding-TTS (ENSMUSG00000032212.10) 41517 ENSMUSG00000032212.10 ENSMUSG00000032212 ENSMUST00000216881 Sltm protein_coding Interval_73076 chr17 34632093 34633050 + 0 NA TTS (ENSMUSG00000015476.6) protein_coding-TTS (ENSMUSG00000015476.6) 1167 ENSMUSG00000015476.6 ENSMUSG00000015476 ENSMUST00000172945 Prrt1 protein_coding Interval_141868 chr6 135021418 135021907 + 0 NA TTS (ENSMUSG00000030204.10) protein_coding-TTS (ENSMUSG00000030204.10) 10038 ENSMUSG00000030204.10 ENSMUSG00000030204 ENSMUST00000155022 Ddx47 protein_coding Interval_154429 chr8 16262077 16262328 + 0 NA intron (ENSMUSG00000060924.15, intron 12 of 33) protein_coding-intron (ENSMUSG00000060924.15, intron 12 of 69) 36199 ENSMUSG00000085150.1 ENSMUSG00000085150 ENSMUST00000129158 Gm16346 antisense Interval_44528 chr13 45743677 45744152 + 0 NA intron (ENSMUSG00000046876.16, intron 4 of 7) protein_coding-intron (ENSMUSG00000046876.16, intron 4 of 7) -5658 ENSMUSG00000114131.1 ENSMUSG00000114131 ENSMUST00000221126 Gm47460 antisense Interval_72613 chr17 31048204 31048417 + 0 NA Intergenic Intergenic -9417 ENSMUSG00000024030.7 ENSMUSG00000024030 ENSMUST00000236241 Abcg1 protein_coding Interval_100047 chr2 166740429 166740783 + 0 NA Intergenic Intergenic -28139 ENSMUSG00000088063.1 ENSMUSG00000088063 ENSMUST00000157438 Gm24477 snRNA Interval_32929 chr11 113186753 113187595 + 0 NA intron (ENSMUSG00000087259.7, intron 1 of 2) lincRNA-intron (ENSMUSG00000087259.7, intron 1 of 2) -14097 ENSMUSG00000087259.7 ENSMUSG00000087259 ENSMUST00000150712 2610035D17Rik lincRNA Interval_142066 chr6 136913400 136913802 + 0 NA intron (ENSMUSG00000030219.13, intron 3 of 3) protein_coding-intron (ENSMUSG00000030219.13, intron 3 of 6) 8539 ENSMUSG00000030219.13 ENSMUSG00000030219 ENSMUST00000162755 Erp27 protein_coding Interval_89992 chr2 27125366 27126705 + 0 NA intron (ENSMUSG00000009216.7, intron 1 of 2) protein_coding-intron (ENSMUSG00000009216.7, intron 1 of 2) 16456 ENSMUSG00000009216.7 ENSMUSG00000009216 ENSMUST00000151224 Fam163b protein_coding Interval_68076 chr16 64868501 64868927 + 0 NA Intergenic Intergenic 16012 ENSMUSG00000054604.7 ENSMUSG00000054604 ENSMUST00000136532 Cggbp1 protein_coding Interval_20343 chr10 117007757 117009532 + 0 NA intron (ENSMUSG00000020169.4, intron 8 of 9) protein_coding-intron (ENSMUSG00000020169.4, intron 8 of 9) 22330 ENSMUSG00000020169.4 ENSMUSG00000020169 ENSMUST00000020378 Best3 protein_coding Interval_17867 chr10 80489667 80491447 + 0 NA Intergenic Intergenic -4278 ENSMUSG00000045518.8 ENSMUSG00000045518 ENSMUST00000051773 Onecut3 protein_coding Interval_106741 chr3 100264569 100265578 + 0 NA Intergenic Intergenic -38215 ENSMUSG00000064573.1 ENSMUSG00000064573 ENSMUST00000082639 Gm25802 snoRNA Interval_151590 chr7 124528241 124528672 + 0 NA Intergenic Intergenic -34155 ENSMUSG00000085892.1 ENSMUSG00000085892 ENSMUST00000153577 Gm15339 lincRNA Interval_147492 chr7 67707481 67707747 + 0 NA intron (ENSMUSG00000030555.16, intron 3 of 6) protein_coding-intron (ENSMUSG00000030555.16, intron 8 of 11) -26311 ENSMUSG00000109115.1 ENSMUSG00000109115 ENSMUST00000207774 Gm44669 TEC Interval_108957 chr3 133587747 133588480 + 0 NA TTS (ENSMUSG00000077336.1) snoRNA-TTS (ENSMUSG00000077336.1) 424 ENSMUSG00000077336.1 ENSMUSG00000077336 ENSMUST00000104148 Gm23011 snoRNA Interval_54252 chr14 66903591 66903932 + 0 NA Intergenic Intergenic -7481 ENSMUSG00000046204.14 ENSMUSG00000046204 ENSMUST00000165831 Pnma2 protein_coding Interval_29589 chr11 85207198 85207467 + 0 NA intron (ENSMUSG00000018481.9, intron 5 of 12) protein_coding-intron (ENSMUSG00000018481.9, intron 5 of 12) -9265 ENSMUSG00000080791.1 ENSMUSG00000080791 ENSMUST00000119676 Akirin1-ps processed_pseudogene Interval_171937 chr9 122736652 122737218 + 0 NA Intergenic Intergenic -13668 ENSMUSG00000094985.2 ENSMUSG00000094985 ENSMUST00000213519 Topaz1 protein_coding Interval_51730 chr14 31696935 31697477 + 0 NA Intergenic Intergenic 56178 ENSMUSG00000021900.10 ENSMUSG00000021900 ENSMUST00000090147 Btd protein_coding Interval_93209 chr2 71172972 71173334 + 0 NA Intergenic Intergenic -38851 ENSMUSG00000027012.15 ENSMUSG00000027012 ENSMUST00000138613 Dync1i2 protein_coding Interval_139781 chr6 108658511 108661768 + 0 NA promoter-TSS (ENSMUSG00000030103.11) protein_coding-promoter-TSS (ENSMUSG00000030103.11) -2907 ENSMUSG00000030103.11 ENSMUSG00000030103 ENSMUST00000204550 Bhlhe40 protein_coding Interval_110363 chr3 157443585 157443855 + 0 NA Intergenic Intergenic 33703 ENSMUSG00000104555.1 ENSMUSG00000104555 ENSMUST00000197739 Gm5983 processed_pseudogene Interval_22546 chr11 11684623 11686666 + 0 NA promoter-TSS (ENSMUSG00000018654.17) protein_coding-promoter-TSS (ENSMUSG00000018654.17) -244 ENSMUSG00000085652.1 ENSMUSG00000085652 ENSMUST00000145789 Gm11999 processed_transcript Interval_173884 chrX 106967137 106967885 + 0 NA Intergenic Intergenic 46886 ENSMUSG00000049929.7 ENSMUSG00000049929 ENSMUST00000060576 Lpar4 protein_coding Interval_74677 chr17 55884579 55885293 + 0 NA Intergenic Intergenic -6006 ENSMUSG00000057835.7 ENSMUSG00000057835 ENSMUST00000079642 Zfp119a protein_coding Interval_110883 chr4 9512580 9513501 + 0 NA intron (ENSMUSG00000028207.18, intron 18 of 22) protein_coding-intron (ENSMUSG00000028207.18, intron 19 of 23) -65841 ENSMUSG00000087564.1 ENSMUSG00000087564 ENSMUST00000155578 Gm11817 antisense Interval_5768 chr1 91600029 91601467 + 0 NA Intergenic Intergenic -10658 ENSMUSG00000101705.1 ENSMUSG00000101705 ENSMUST00000188800 Gm28380 lincRNA Interval_95817 chr2 116896767 116897293 + 0 NA Intergenic Intergenic -3164 ENSMUSG00000085316.1 ENSMUSG00000085316 ENSMUST00000155323 D330050G23Rik lincRNA Interval_128897 chr5 115941536 115943004 + 0 NA intron (ENSMUSG00000029516.19, intron 9 of 37) protein_coding-intron (ENSMUSG00000029516.19, intron 18 of 46) 39840 ENSMUSG00000107263.1 ENSMUSG00000107263 ENSMUST00000201457 Gm42471 TEC Interval_76384 chr17 79796785 79797586 + 0 NA Intergenic Intergenic -14528 ENSMUSG00000117394.1 ENSMUSG00000117394 ENSMUST00000234236 1700106O07Rik lincRNA Interval_8352 chr1 137737738 137738779 + 0 NA Intergenic Intergenic 3940 ENSMUSG00000088715.1 ENSMUSG00000088715 ENSMUST00000158090 Gm22727 snoRNA Interval_135433 chr6 39347364 39349563 + 0 NA promoter-TSS (ENSMUSG00000029924.12) protein_coding-promoter-TSS (ENSMUSG00000029924.12) 29194 ENSMUSG00000029924.12 ENSMUSG00000029924 ENSMUST00000202785 Slc37a3 protein_coding Interval_163621 chr9 22632803 22633312 + 0 NA intron (ENSMUSG00000035919.16, intron 11 of 22) protein_coding-intron (ENSMUSG00000035919.16, intron 10 of 21) 37471 ENSMUSG00000089958.1 ENSMUSG00000089958 ENSMUST00000160140 Gm16165 processed_pseudogene Interval_84130 chr19 7396937 7397371 + 0 NA Intergenic Intergenic 1923 ENSMUSG00000095690.2 ENSMUSG00000095690 ENSMUST00000178377 Rab11b-ps2 processed_pseudogene Interval_44577 chr13 46324765 46325214 + 0 NA Intergenic Intergenic 51268 ENSMUSG00000063529.3 ENSMUSG00000063529 ENSMUST00000076622 Stmnd1 protein_coding Interval_98525 chr2 152987811 152988656 + 0 NA intron (ENSMUSG00000074673.15, intron 5 of 13) protein_coding-intron (ENSMUSG00000074673.15, intron 5 of 14) 3398 ENSMUSG00000089898.2 ENSMUSG00000089898 ENSMUST00000130021 Gm14199 antisense Interval_22668 chr11 12698218 12698641 + 0 NA Intergenic Intergenic 5616 ENSMUSG00000088509.1 ENSMUSG00000088509 ENSMUST00000157884 Gm22789 snoRNA Interval_61734 chr15 83639846 83640495 + 0 NA intron (ENSMUSG00000016763.15, intron 4 of 19) protein_coding-intron (ENSMUSG00000016763.15, intron 7 of 22) -26431 ENSMUSG00000016763.15 ENSMUSG00000016763 ENSMUST00000229057 Scube1 protein_coding Interval_126639 chr5 91449897 91450417 + 0 NA Intergenic Intergenic -47335 ENSMUSG00000082361.6 ENSMUSG00000082361 ENSMUST00000201090 Btc protein_coding Interval_90189 chr2 28911403 28911673 + 0 NA exon (ENSMUSG00000026805.14, exon 2 of 3) protein_coding-exon (ENSMUSG00000026805.14, exon 2 of 3) 3967 ENSMUSG00000026805.14 ENSMUSG00000026805 ENSMUST00000174027 Barhl1 protein_coding Interval_46032 chr13 60435628 60436277 + 0 NA Intergenic Intergenic -1221 ENSMUSG00000114274.1 ENSMUSG00000114274 ENSMUST00000225281 Gm35333 lincRNA Interval_55910 chr14 101978490 101979465 + 0 NA Intergenic Intergenic 3786 ENSMUSG00000115584.1 ENSMUSG00000115584 ENSMUST00000226515 Gm5854 processed_pseudogene Interval_7109 chr1 126033621 126033959 + 0 NA exon (ENSMUSG00000049690.15, exon 11 of 17) protein_coding-exon (ENSMUSG00000049690.15, exon 11 of 17) 37671 ENSMUSG00000102723.1 ENSMUSG00000102723 ENSMUST00000194647 Gm37936 TEC Interval_123665 chr5 34382596 34382812 + 0 NA intron (ENSMUSG00000037210.16, intron 1 of 20) protein_coding-intron (ENSMUSG00000037210.16, intron 1 of 20) 31588 ENSMUSG00000029110.13 ENSMUSG00000029110 ENSMUST00000183265 Rnf4 protein_coding Interval_61889 chr15 84966691 84966898 + 0 NA intron (ENSMUSG00000036046.14, intron 1 of 3) protein_coding-intron (ENSMUSG00000036046.14, intron 1 of 9) -15171 ENSMUSG00000080441.1 ENSMUSG00000080441 ENSMUST00000116791 Mir1249 miRNA Interval_117180 chr4 120282644 120283405 + 0 NA intron (ENSMUSG00000052135.8, intron 1 of 1) protein_coding-intron (ENSMUSG00000052135.8, intron 1 of 1) 4325 ENSMUSG00000052135.8 ENSMUSG00000052135 ENSMUST00000102656 Foxo6 protein_coding Interval_47726 chr13 91857212 91859050 + 0 NA intron (ENSMUSG00000021622.3, intron 8 of 9) protein_coding-intron (ENSMUSG00000021622.3, intron 8 of 9) -3354 ENSMUSG00000082488.2 ENSMUSG00000082488 ENSMUST00000189130 1700119I11Rik antisense Interval_110845 chr4 8921303 8922349 + 0 NA Intergenic Intergenic -19433 ENSMUSG00000083786.1 ENSMUSG00000083786 ENSMUST00000119493 Rps18-ps2 processed_pseudogene Interval_83419 chr18 85001898 85002284 + 0 NA Intergenic Intergenic 11244 ENSMUSG00000118255.1 ENSMUSG00000118255 ENSMUST00000238005 Gm50369 processed_pseudogene Interval_68916 chr16 88657339 88657579 + 0 NA Intergenic Intergenic -9663 ENSMUSG00000071471.2 ENSMUSG00000071471 ENSMUST00000095934 Krtap26-1 protein_coding Interval_99778 chr2 164856342 164858232 + 0 NA promoter-TSS (ENSMUSG00000017754.13) protein_coding-promoter-TSS (ENSMUSG00000017754.13) 333 ENSMUSG00000017754.13 ENSMUSG00000017754 ENSMUST00000128110 Pltp protein_coding Interval_81774 chr18 64551054 64552002 + 0 NA intron (ENSMUSG00000039529.9, intron 2 of 5) protein_coding-intron (ENSMUSG00000039529.9, intron 19 of 27) -39651 ENSMUSG00000024587.10 ENSMUSG00000024587 ENSMUST00000237027 Nars protein_coding Interval_25606 chr11 50187211 50187442 + 0 NA intron (ENSMUSG00000020381.10, intron 3 of 6) protein_coding-intron (ENSMUSG00000020381.10, intron 3 of 6) 12882 ENSMUSG00000020381.10 ENSMUSG00000020381 ENSMUST00000123164 Mrnip protein_coding Interval_92517 chr2 60250058 60250281 + 0 NA TTS (ENSMUSG00000026977.17) protein_coding-TTS (ENSMUSG00000026977.17) 25405 ENSMUSG00000080198.2 ENSMUSG00000080198 ENSMUST00000116410 Rpl10a-ps4 processed_pseudogene Interval_130464 chr5 127873037 127875176 + 0 NA intron (ENSMUSG00000034310.8, intron 4 of 8) protein_coding-intron (ENSMUSG00000034310.8, intron 4 of 8) -3227 ENSMUSG00000061331.5 ENSMUSG00000061331 ENSMUST00000109542 Gm17132 unprocessed_pseudogene Interval_48987 chr13 106768675 106768886 + 0 NA Intergenic Intergenic -7201 ENSMUSG00000114422.1 ENSMUSG00000114422 ENSMUST00000225713 Gm30411 lincRNA Interval_117794 chr4 126259737 126261182 + 0 NA Intergenic Intergenic -1941 ENSMUSG00000028847.8 ENSMUSG00000028847 ENSMUST00000126786 Trappc3 protein_coding Interval_142929 chr6 147054815 147055539 + 0 NA intron (ENSMUSG00000040112.9, intron 4 of 4) protein_coding-intron (ENSMUSG00000040112.9, intron 4 of 7) 12413 ENSMUSG00000040112.9 ENSMUSG00000040112 ENSMUST00000123139 Mrps35 protein_coding Interval_51919 chr14 33933896 33934302 + 0 NA intron (ENSMUSG00000021943.7, intron 2 of 2) protein_coding-intron (ENSMUSG00000021943.7, intron 2 of 2) -6940 ENSMUSG00000072625.1 ENSMUSG00000072625 ENSMUST00000100720 Gdf2 protein_coding Interval_76688 chr17 83495871 83496299 + 0 NA Intergenic Intergenic 8421 ENSMUSG00000024248.14 ENSMUSG00000024248 ENSMUST00000234258 Cox7a2l protein_coding Interval_4734 chr1 78103499 78103871 + 0 NA intron (ENSMUSG00000004872.15, intron 7 of 7) protein_coding-intron (ENSMUSG00000004872.15, intron 7 of 8) 93428 ENSMUSG00000004872.15 ENSMUSG00000004872 ENSMUST00000172555 Pax3 protein_coding Interval_109449 chr3 142507917 142508116 + 0 NA TTS (ENSMUSG00000105504.4) protein_coding-TTS (ENSMUSG00000105504.4) 5220 ENSMUSG00000105504.4 ENSMUSG00000105504 ENSMUST00000199578 Gbp5 protein_coding Interval_114899 chr4 86802264 86803501 + 0 NA intron (ENSMUSG00000038024.17, intron 11 of 30) protein_coding-intron (ENSMUSG00000038024.17, intron 12 of 25) 15695 ENSMUSG00000082969.1 ENSMUSG00000082969 ENSMUST00000121575 Gm12630 processed_pseudogene Interval_15446 chr10 46742700 46742934 + 0 NA Intergenic Intergenic 72673 ENSMUSG00000111754.1 ENSMUSG00000111754 ENSMUST00000217086 Gm19994 processed_pseudogene Interval_122981 chr5 28135554 28136548 + 0 NA Intergenic Intergenic -29643 ENSMUSG00000039095.8 ENSMUSG00000039095 ENSMUST00000036177 En2 protein_coding Interval_83970 chr19 5858046 5858617 + 0 NA intron (ENSMUSG00000024816.12, intron 9 of 10) protein_coding-intron (ENSMUSG00000024816.12, intron 9 of 10) 12708 ENSMUSG00000043488.5 ENSMUSG00000043488 ENSMUST00000135347 Frmd8os antisense Interval_91404 chr2 38584262 38586067 + 0 NA intron (ENSMUSG00000026749.11, intron 9 of 9) protein_coding-intron (ENSMUSG00000026749.11, intron 9 of 9) -18810 ENSMUSG00000107535.1 ENSMUSG00000107535 ENSMUST00000203964 Gm44183 TEC Interval_58710 chr15 37262356 37263196 + 0 NA intron (ENSMUSG00000022286.16, intron 1 of 9) protein_coding-intron (ENSMUSG00000022286.16, intron 1 of 15) -19614 ENSMUSG00000089949.2 ENSMUSG00000089949 ENSMUST00000161571 Gm16137 antisense Interval_2507 chr1 39858288 39858535 + 0 NA Intergenic Intergenic -11081 ENSMUSG00000101634.6 ENSMUSG00000101634 ENSMUST00000186683 1700066B17Rik lincRNA Interval_81571 chr18 61755285 61755979 + 0 NA exon (ENSMUSG00000033032.15, exon 5 of 19) protein_coding-exon (ENSMUSG00000033032.15, exon 5 of 19) 29199 ENSMUSG00000098702.1 ENSMUSG00000098702 ENSMUST00000184530 1500015A07Rik antisense Interval_147874 chr7 74799142 74799910 + 0 NA Intergenic Intergenic 33539 ENSMUSG00000108468.1 ENSMUSG00000108468 ENSMUST00000206203 Gm30459 lincRNA Interval_153299 chr7 143464050 143465115 + 0 NA Intergenic Intergenic -4420 ENSMUSG00000037664.13 ENSMUSG00000037664 ENSMUST00000208137 Cdkn1c protein_coding Interval_115641 chr4 101543349 101543949 + 0 NA intron (ENSMUSG00000028528.17, intron 2 of 6) protein_coding-intron (ENSMUSG00000028528.17, intron 1 of 18) -11446 ENSMUSG00000089446.1 ENSMUSG00000089446 ENSMUST00000158821 Gm22533 misc_RNA Interval_70913 chr17 15830671 15832637 + 0 NA promoter-TSS (ENSMUSG00000048027.9) protein_coding-promoter-TSS (ENSMUSG00000048027.9) -769 ENSMUSG00000048027.9 ENSMUSG00000048027 ENSMUST00000231985 Rgmb protein_coding Interval_43348 chr13 29501367 29501665 + 0 NA intron (ENSMUSG00000006191.17, intron 1 of 2) protein_coding-intron (ENSMUSG00000006191.17, intron 11 of 15) 15938 ENSMUSG00000006191.17 ENSMUSG00000006191 ENSMUST00000129231 Cdkal1 protein_coding Interval_141334 chr6 127359001 127359762 + 0 NA Intergenic Intergenic 9098 ENSMUSG00000107243.1 ENSMUSG00000107243 ENSMUST00000202011 Gm43631 processed_pseudogene Interval_11196 chr1 180040575 180040887 + 0 NA intron (ENSMUSG00000026490.18, intron 5 of 37) protein_coding-intron (ENSMUSG00000026490.18, intron 5 of 34) 19669 ENSMUSG00000102194.1 ENSMUSG00000102194 ENSMUST00000191822 Gm38169 TEC Interval_32524 chr11 108128714 108128991 + 0 NA intron (ENSMUSG00000050965.14, intron 3 of 16) protein_coding-intron (ENSMUSG00000050965.14, intron 3 of 16) -52998 ENSMUSG00000084978.1 ENSMUSG00000084978 ENSMUST00000153899 Gm11655 antisense Interval_76744 chr17 83788276 83789059 + 0 NA promoter-TSS (ENSMUSG00000055817.18) protein_coding-promoter-TSS (ENSMUSG00000055817.18) 58122 ENSMUSG00000000673.9 ENSMUSG00000000673 ENSMUST00000234312 Haao protein_coding Interval_73392 chr17 36944267 36944607 + 0 NA promoter-TSS (ENSMUSG00000036492.12) protein_coding-promoter-TSS (ENSMUSG00000036492.12) -641 ENSMUSG00000036492.12 ENSMUSG00000036492 ENSMUST00000174669 Rnf39 protein_coding Interval_130241 chr5 125152536 125154382 + 0 NA intron (ENSMUSG00000029478.16, intron 1 of 47) protein_coding-intron (ENSMUSG00000029478.16, intron 1 of 46) 66618 ENSMUSG00000106663.1 ENSMUSG00000106663 ENSMUST00000198978 Gm42839 antisense Interval_158350 chr8 82351042 82351592 + 0 NA intron (ENSMUSG00000031712.10, intron 1 of 1) protein_coding-intron (ENSMUSG00000031712.10, intron 2 of 7) -6844 ENSMUSG00000031712.10 ENSMUSG00000031712 ENSMUST00000210472 Il15 protein_coding Interval_28600 chr11 77068124 77068904 + 0 NA intron (ENSMUSG00000037958.13, intron 2 of 2) protein_coding-intron (ENSMUSG00000037958.13, intron 2 of 6) 9658 ENSMUSG00000065518.2 ENSMUSG00000065518 ENSMUST00000083584 Mir423 miRNA Interval_11221 chr1 180268500 180269312 + 0 NA intron (ENSMUSG00000102923.1, intron 2 of 2) antisense-intron (ENSMUSG00000102923.1, intron 2 of 2) 12477 ENSMUSG00000102923.1 ENSMUSG00000102923 ENSMUST00000192164 Gm31728 antisense Interval_2969 chr1 51717007 51718514 + 0 NA intron (ENSMUSG00000101741.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000101741.1, intron 1 of 1) -19860 ENSMUSG00000101741.1 ENSMUSG00000101741 ENSMUST00000186769 Gm28055 lincRNA Interval_10462 chr1 171121665 171123191 + 0 NA promoter-TSS (ENSMUSG00000026649.14) protein_coding-promoter-TSS (ENSMUSG00000026649.14) -746 ENSMUSG00000026649.14 ENSMUSG00000026649 ENSMUST00000124157 Cfap126 protein_coding Interval_59819 chr15 59555074 59555282 + 0 NA intron (ENSMUSG00000059586.10, intron 5 of 7) protein_coding-intron (ENSMUSG00000059586.10, intron 4 of 6) -63412 ENSMUSG00000115896.1 ENSMUSG00000115896 ENSMUST00000229684 Gm36677 lincRNA Interval_92497 chr2 60132159 60132469 + 0 NA intron (ENSMUSG00000026987.16, intron 2 of 3) protein_coding-intron (ENSMUSG00000026987.16, intron 2 of 3) -1741 ENSMUSG00000082330.1 ENSMUSG00000082330 ENSMUST00000119390 Ldha-ps processed_pseudogene Interval_157904 chr8 75415348 75416754 + 0 NA Intergenic Intergenic -9462 ENSMUSG00000110469.1 ENSMUSG00000110469 ENSMUST00000212864 Gm10358 protein_coding Interval_76584 chr17 81716130 81716886 + 0 NA intron (ENSMUSG00000054640.15, intron 1 of 11) protein_coding-intron (ENSMUSG00000054640.15, intron 1 of 10) 21869 ENSMUSG00000054640.15 ENSMUSG00000054640 ENSMUST00000234923 Slc8a1 protein_coding Interval_88347 chr2 4233124 4233345 + 0 NA intron (ENSMUSG00000026657.17, intron 1 of 22) protein_coding-intron (ENSMUSG00000026657.17, intron 1 of 22) 16153 ENSMUSG00000102357.1 ENSMUSG00000102357 ENSMUST00000191718 Gm38348 sense_intronic Interval_97309 chr2 133554304 133555025 + 0 NA exon (ENSMUSG00000027358.6, exon 2 of 3) protein_coding-exon (ENSMUSG00000027358.6, exon 2 of 3) 2505 ENSMUSG00000027358.6 ENSMUSG00000027358 ENSMUST00000028836 Bmp2 protein_coding Interval_100257 chr2 168004882 168006245 + 0 NA intron (ENSMUSG00000074577.9, intron 2 of 21) protein_coding-intron (ENSMUSG00000074577.9, intron 2 of 21) -4966 ENSMUSG00000086411.1 ENSMUSG00000086411 ENSMUST00000142374 Gm14236 antisense Interval_29658 chr11 85857675 85858613 + 0 NA Intergenic Intergenic -7811 ENSMUSG00000069785.4 ENSMUSG00000069785 ENSMUST00000146433 Gm11444 protein_coding Interval_118191 chr4 129440368 129441394 + 0 NA promoter-TSS (ENSMUSG00000048485.12) protein_coding-promoter-TSS (ENSMUSG00000048485.12) -8352 ENSMUSG00000048485.12 ENSMUSG00000048485 ENSMUST00000124364 Zbtb8b protein_coding Interval_6534 chr1 114849056 114850292 + 0 NA Intergenic Intergenic 370089 ENSMUSG00000101687.1 ENSMUSG00000101687 ENSMUST00000185902 Gm4854 processed_pseudogene Interval_15465 chr10 47426349 47427015 + 0 NA Intergenic Intergenic -101010 ENSMUSG00000111072.1 ENSMUSG00000111072 ENSMUST00000217393 Gm9068 processed_pseudogene Interval_103446 chr3 41605352 41607216 + 0 NA exon (ENSMUSG00000025764.14, exon 9 of 9) protein_coding-exon (ENSMUSG00000025764.14, exon 9 of 9) -42586 ENSMUSG00000103843.1 ENSMUSG00000103843 ENSMUST00000192060 Gm31266 antisense Interval_54272 chr14 67026844 67027393 + 0 NA intron (ENSMUSG00000022052.9, intron 4 of 6) protein_coding-intron (ENSMUSG00000022052.9, intron 4 of 9) 16411 ENSMUSG00000022052.9 ENSMUSG00000022052 ENSMUST00000225469 Ppp2r2a protein_coding Interval_79139 chr18 24913032 24913695 + 0 NA intron (ENSMUSG00000034295.10, intron 5 of 24) protein_coding-intron (ENSMUSG00000034295.10, intron 5 of 26) 152200 ENSMUSG00000088920.1 ENSMUSG00000088920 ENSMUST00000158295 Gm24294 misc_RNA Interval_104966 chr3 79336668 79337232 + 0 NA intron (ENSMUSG00000091685.6, intron 1 of 3) protein_coding-intron (ENSMUSG00000091685.6, intron 1 of 3) -8429 ENSMUSG00000091685.6 ENSMUSG00000091685 ENSMUST00000199658 Gm17359 protein_coding Interval_157175 chr8 66960442 66961225 + 0 NA Intergenic Intergenic -42055 ENSMUSG00000077485.1 ENSMUSG00000077485 ENSMUST00000104297 Gm25275 snoRNA Interval_20038 chr10 112399617 112401090 + 0 NA intron (ENSMUSG00000035681.7, intron 2 of 4) protein_coding-intron (ENSMUSG00000035681.7, intron 2 of 4) -55903 ENSMUSG00000035681.7 ENSMUSG00000035681 ENSMUST00000218827 Kcnc2 protein_coding Interval_62201 chr15 88765964 88766791 + 0 NA intron (ENSMUSG00000034333.15, intron 2 of 2) protein_coding-intron (ENSMUSG00000034333.15, intron 2 of 2) 14617 ENSMUSG00000034333.15 ENSMUSG00000034333 ENSMUST00000160975 Zbed4 protein_coding Interval_45672 chr13 56752301 56754050 + 0 NA exon (ENSMUSG00000110086.1, exon 1 of 1) protein_coding-exon (ENSMUSG00000110086.1, exon 1 of 1) 652 ENSMUSG00000110086.1 ENSMUSG00000110086 ENSMUST00000210744 Gm45623 protein_coding Interval_12806 chr10 5736287 5736531 + 0 NA intron (ENSMUSG00000110983.1, intron 1 of 1) processed_pseudogene-intron (ENSMUSG00000110983.1, intron 1 of 1) 590 ENSMUSG00000110983.1 ENSMUSG00000110983 ENSMUST00000213369 Gm47679 processed_pseudogene Interval_142107 chr6 137182570 137183291 + 0 NA Intergenic Intergenic -36001 ENSMUSG00000107567.1 ENSMUSG00000107567 ENSMUST00000203679 4930480K02Rik TEC Interval_148202 chr7 79789145 79789906 + 0 NA TTS (ENSMUSG00000108506.1) processed_pseudogene-TTS (ENSMUSG00000108506.1) 1100 ENSMUSG00000108506.1 ENSMUSG00000108506 ENSMUST00000206719 Gm44705 processed_pseudogene Interval_43034 chr13 23375008 23376866 + 0 NA intron (ENSMUSG00000087097.1, intron 3 of 3) antisense-intron (ENSMUSG00000087097.1, intron 3 of 3) -6568 ENSMUSG00000083667.1 ENSMUSG00000083667 ENSMUST00000121969 Gm11334 processed_pseudogene Interval_127807 chr5 107953538 107953872 + 0 NA intron (ENSMUSG00000029270.10, intron 1 of 4) protein_coding-intron (ENSMUSG00000029270.10, intron 1 of 4) 19293 ENSMUSG00000029270.10 ENSMUSG00000029270 ENSMUST00000153172 Dipk1a protein_coding Interval_248 KZ289068.1 301256 301529 + 0 NA NA NA NA NA Interval_149944 chr7 103078984 103079184 + 0 NA Intergenic Intergenic -2801 ENSMUSG00000073959.5 ENSMUSG00000073959 ENSMUST00000098210 Olfr584 protein_coding Interval_13019 chr10 9395113 9395323 + 0 NA TTS (ENSMUSG00000111627.1) lincRNA-TTS (ENSMUSG00000111627.1) 39063 ENSMUSG00000112048.1 ENSMUSG00000112048 ENSMUST00000217850 Gm48750 processed_pseudogene Interval_130914 chr5 134013249 134013568 + 0 NA Intergenic Intergenic 78043 ENSMUSG00000106800.1 ENSMUSG00000106800 ENSMUST00000202497 1700030N18Rik TEC Interval_55317 chr14 82474453 82474720 + 0 NA Intergenic Intergenic -90057 ENSMUSG00000089266.1 ENSMUSG00000089266 ENSMUST00000158641 Gm22891 snRNA Interval_24985 chr11 42491018 42491232 + 0 NA intron (ENSMUSG00000007653.12, intron 4 of 9) protein_coding-intron (ENSMUSG00000007653.12, intron 5 of 9) 69775 ENSMUSG00000007653.12 ENSMUSG00000007653 ENSMUST00000192403 Gabrb2 protein_coding Interval_27224 chr11 64315304 64316018 + 0 NA Intergenic Intergenic -119671 ENSMUSG00000047759.6 ENSMUSG00000047759 ENSMUST00000058652 Hs3st3a1 protein_coding Interval_160845 chr8 113664444 113665253 + 0 NA Intergenic Intergenic 11610 ENSMUSG00000110582.1 ENSMUSG00000110582 ENSMUST00000211951 Gm30052 lincRNA Interval_141738 chr6 134138183 134138710 + 0 NA intron (ENSMUSG00000030199.16, intron 2 of 4) protein_coding-intron (ENSMUSG00000030199.16, intron 2 of 7) 33561 ENSMUSG00000091438.1 ENSMUSG00000091438 ENSMUST00000164616 Gm17088 antisense Interval_108911 chr3 133234548 133235440 + 0 NA promoter-TSS (ENSMUSG00000040969.14) protein_coding-promoter-TSS (ENSMUSG00000040969.14) -45 ENSMUSG00000040969.14 ENSMUSG00000040969 ENSMUST00000161932 Arhgef38 protein_coding Interval_19924 chr10 111226403 111227060 + 0 NA intron (ENSMUSG00000020189.15, intron 3 of 5) protein_coding-intron (ENSMUSG00000020189.15, intron 2 of 22) -21337 ENSMUSG00000020189.15 ENSMUSG00000020189 ENSMUST00000238838 Osbpl8 protein_coding Interval_146984 chr7 57142944 57143179 + 0 NA intron (ENSMUSG00000055026.13, intron 3 of 9) protein_coding-intron (ENSMUSG00000055026.13, intron 3 of 9) 116980 ENSMUSG00000108377.1 ENSMUSG00000108377 ENSMUST00000206642 Gm18642 processed_pseudogene Interval_6496 chr1 112416145 112417379 + 0 NA Intergenic Intergenic -11907 ENSMUSG00000101054.1 ENSMUSG00000101054 ENSMUST00000185872 Gm18406 processed_pseudogene Interval_161587 chr8 121398568 121399536 + 0 NA intron (ENSMUSG00000092329.1, intron 1 of 15) protein_coding-intron (ENSMUSG00000092329.1, intron 1 of 15) -22186 ENSMUSG00000097783.2 ENSMUSG00000097783 ENSMUST00000180597 Gm26747 lincRNA Interval_168874 chr9 88269926 88270295 + 0 NA Intergenic Intergenic 10215 ENSMUSG00000100782.1 ENSMUSG00000100782 ENSMUST00000190118 Gm28231 lincRNA Interval_4424 chr1 74067919 74069518 + 0 NA intron (ENSMUSG00000055322.16, intron 2 of 32) protein_coding-intron (ENSMUSG00000055322.16, intron 2 of 34) 29958 ENSMUSG00000055322.16 ENSMUSG00000055322 ENSMUST00000190599 Tns1 protein_coding Interval_162547 chr9 4112201 4112779 + 0 NA Intergenic Intergenic -101432 ENSMUSG00000110691.1 ENSMUSG00000110691 ENSMUST00000211927 Gm5363 processed_pseudogene Interval_151677 chr7 125973806 125974055 + 0 NA intron (ENSMUSG00000046182.8, intron 2 of 6) protein_coding-intron (ENSMUSG00000046182.8, intron 2 of 6) 90517 ENSMUSG00000108376.1 ENSMUSG00000108376 ENSMUST00000206586 Gm44874 TEC Interval_95806 chr2 116768616 116769956 + 0 NA Intergenic Intergenic 107882 ENSMUSG00000086462.1 ENSMUSG00000086462 ENSMUST00000151391 Gm13990 antisense Interval_163619 chr9 22591883 22593084 + 0 NA intron (ENSMUSG00000035919.16, intron 10 of 22) protein_coding-intron (ENSMUSG00000035919.16, intron 9 of 21) 78045 ENSMUSG00000089958.1 ENSMUSG00000089958 ENSMUST00000160140 Gm16165 processed_pseudogene Interval_11032 chr1 178582973 178583570 + 0 NA intron (ENSMUSG00000026494.12, intron 2 of 3) protein_coding-intron (ENSMUSG00000026494.12, intron 2 of 14) -53634 ENSMUSG00000064967.1 ENSMUSG00000064967 ENSMUST00000083033 Gm24405 snRNA Interval_86998 chr19 45450103 45451051 + 0 NA exon (ENSMUSG00000057605.4, exon 1 of 1) processed_pseudogene-exon (ENSMUSG00000057605.4, exon 1 of 1) 618 ENSMUSG00000057605.4 ENSMUSG00000057605 ENSMUST00000077435 Gm6807 processed_pseudogene Interval_161931 chr8 123841791 123842950 + 0 NA exon (ENSMUSG00000031971.15, exon 3 of 3) protein_coding-exon (ENSMUSG00000031971.15, exon 3 of 3) -1585 ENSMUSG00000085030.1 ENSMUSG00000085030 ENSMUST00000138442 2810455O05Rik lincRNA Interval_158380 chr8 83227632 83227923 + 0 NA intron (ENSMUSG00000031709.15, intron 3 of 17) protein_coding-intron (ENSMUSG00000031709.15, intron 3 of 17) -31482 ENSMUSG00000031709.15 ENSMUSG00000031709 ENSMUST00000142673 Tbc1d9 protein_coding Interval_20287 chr10 116674298 116675395 + 0 NA exon (ENSMUSG00000097104.1, exon 1 of 4) lincRNA-exon (ENSMUSG00000097104.1, exon 1 of 4) 255 ENSMUSG00000097104.1 ENSMUSG00000097104 ENSMUST00000181656 Gm26579 lincRNA Interval_26911 chr11 61514765 61515413 + 0 NA Intergenic Intergenic 9834 ENSMUSG00000001039.12 ENSMUSG00000001039 ENSMUST00000146562 B9d1 protein_coding Interval_101146 chr2 178476020 178476623 + 0 NA intron (ENSMUSG00000039155.15, intron 12 of 13) protein_coding-intron (ENSMUSG00000039155.15, intron 12 of 14) 15691 ENSMUSG00000039155.15 ENSMUSG00000039155 ENSMUST00000176869 Cdh26 protein_coding Interval_1068 chr1 14786245 14786553 + 0 NA Intergenic Intergenic -2246 ENSMUSG00000103492.1 ENSMUSG00000103492 ENSMUST00000194866 Gm37412 TEC Interval_173912 chrX 110268145 110268547 + 0 NA Intergenic Intergenic -104407 ENSMUSG00000082853.1 ENSMUSG00000082853 ENSMUST00000122296 Gm7134 processed_pseudogene Interval_47831 chr13 93612425 93613482 + 0 NA Intergenic Intergenic -12429 ENSMUSG00000085834.1 ENSMUSG00000085834 ENSMUST00000143025 Gm15622 antisense Interval_40895 chr12 109231650 109232438 + 0 NA Intergenic Intergenic 87472 ENSMUSG00000092647.1 ENSMUSG00000092647 ENSMUST00000174906 Gm22234 miRNA Interval_19633 chr10 106421524 106421721 + 0 NA Intergenic Intergenic -22775 ENSMUSG00000112066.1 ENSMUSG00000112066 ENSMUST00000217782 Gm48380 processed_pseudogene Interval_170175 chr9 105914829 105916084 + 0 NA intron (ENSMUSG00000091345.9, intron 14 of 40) protein_coding-intron (ENSMUSG00000091345.9, intron 14 of 39) 45187 ENSMUSG00000091345.9 ENSMUSG00000091345 ENSMUST00000189127 Col6a5 protein_coding Interval_45986 chr13 59795780 59796825 + 0 NA exon (ENSMUSG00000035248.9, exon 1 of 1) protein_coding-exon (ENSMUSG00000035248.9, exon 1 of 1) -14057 ENSMUSG00000114763.1 ENSMUSG00000114763 ENSMUST00000225581 Gm49354 protein_coding Interval_157986 chr8 77574025 77574298 + 0 NA promoter-TSS (ENSMUSG00000109787.1) TEC-promoter-TSS (ENSMUSG00000109787.1) -58 ENSMUSG00000109787.1 ENSMUSG00000109787 ENSMUST00000209267 Gm45286 TEC Interval_1158 chr1 16312765 16313005 + 0 NA intron (ENSMUSG00000025920.19, intron 12 of 13) protein_coding-intron (ENSMUSG00000025920.19, intron 11 of 12) 59293 ENSMUSG00000089982.7 ENSMUSG00000089982 ENSMUST00000159190 Gm7568 antisense Interval_69212 chr16 91390221 91390808 + 0 NA intron (ENSMUSG00000022971.18, intron 1 of 1) protein_coding-intron (ENSMUSG00000022971.18, intron 5 of 8) -1207 ENSMUSG00000093701.7 ENSMUSG00000093701 ENSMUST00000160764 Gm21970 protein_coding Interval_51505 chr14 28960185 28960699 + 0 NA intron (ENSMUSG00000021991.9, intron 1 of 7) protein_coding-intron (ENSMUSG00000021991.9, intron 31 of 37) 49357 ENSMUSG00000088682.1 ENSMUSG00000088682 ENSMUST00000158057 Gm23999 rRNA Interval_70445 chr17 10279151 10279892 + 0 NA intron (ENSMUSG00000062078.15, intron 2 of 6) protein_coding-intron (ENSMUSG00000062078.15, intron 2 of 6) 39840 ENSMUSG00000062078.15 ENSMUSG00000062078 ENSMUST00000233684 Qk protein_coding Interval_105560 chr3 87758563 87759186 + 0 NA TTS (ENSMUSG00000028073.15) protein_coding-TTS (ENSMUSG00000028073.15) 10092 ENSMUSG00000028073.15 ENSMUSG00000028073 ENSMUST00000173184 Pear1 protein_coding Interval_152638 chr7 135624325 135624542 + 0 NA intron (ENSMUSG00000041836.10, intron 1 of 19) protein_coding-intron (ENSMUSG00000041836.10, intron 2 of 20) 27850 ENSMUSG00000097471.8 ENSMUSG00000097471 ENSMUST00000210953 5830432E09Rik antisense Interval_169423 chr9 97123577 97124714 + 0 NA Intergenic Intergenic -34118 ENSMUSG00000032449.13 ENSMUSG00000032449 ENSMUST00000152632 Slc25a36 protein_coding Interval_1417 chr1 21917107 21917461 + 0 NA intron (ENSMUSG00000028033.16, intron 1 of 11) protein_coding-intron (ENSMUSG00000028033.16, intron 1 of 13) 44297 ENSMUSG00000028033.16 ENSMUSG00000028033 ENSMUST00000134505 Kcnq5 protein_coding Interval_133672 chr6 8367265 8368560 + 0 NA intron (ENSMUSG00000089862.8, intron 2 of 2) protein_coding-intron (ENSMUSG00000089862.8, intron 1 of 2) -3776 ENSMUSG00000089890.1 ENSMUSG00000089890 ENSMUST00000161366 Gm16055 antisense Interval_138167 chr6 85836790 85837874 + 0 NA Intergenic Intergenic -5250 ENSMUSG00000030004.6 ENSMUSG00000030004 ENSMUST00000032073 Nat8 protein_coding Interval_67561 chr16 50799004 50799846 + 0 NA Intergenic Intergenic 15947 ENSMUSG00000092276.2 ENSMUSG00000092276 ENSMUST00000174511 1700116B05Rik lincRNA Interval_168232 chr9 78077855 78078703 + 0 NA Intergenic Intergenic 9428 ENSMUSG00000111596.1 ENSMUSG00000111596 ENSMUST00000217247 Gm8058 processed_pseudogene Interval_71596 chr17 24757872 24758297 + 0 NA exon (ENSMUSG00000039628.9, exon 2 of 2) protein_coding-exon (ENSMUSG00000039628.9, exon 2 of 2) 5068 ENSMUSG00000039628.9 ENSMUSG00000039628 ENSMUST00000234202 Hs3st6 protein_coding Interval_129312 chr5 118945829 118947189 + 0 NA Intergenic Intergenic -5830 ENSMUSG00000107144.1 ENSMUSG00000107144 ENSMUST00000202500 4930413E15Rik lincRNA Interval_71395 chr17 23315607 23315804 + 0 NA Intergenic Intergenic -3277 ENSMUSG00000091945.2 ENSMUSG00000091945 ENSMUST00000234493 Vmn2r114 protein_coding Interval_57895 chr15 25099389 25099617 + 0 NA Intergenic Intergenic 28901 ENSMUSG00000115174.1 ENSMUSG00000115174 ENSMUST00000226274 Gm35996 lincRNA Interval_115870 chr4 105352618 105352891 + 0 NA Intergenic Intergenic 22192 ENSMUSG00000081819.1 ENSMUSG00000081819 ENSMUST00000118507 Gm12722 processed_pseudogene Interval_140036 chr6 113563504 113563798 + 0 NA TTS (ENSMUSG00000107786.1) processed_pseudogene-TTS (ENSMUSG00000107786.1) 1214 ENSMUSG00000107786.1 ENSMUSG00000107786 ENSMUST00000204537 Gm44232 processed_pseudogene Interval_4661 chr1 75788724 75789499 + 0 NA Intergenic Intergenic 152721 ENSMUSG00000082012.1 ENSMUSG00000082012 ENSMUST00000121823 Gm5257 processed_pseudogene Interval_782 chr1 11002713 11002955 + 0 NA intron (ENSMUSG00000048960.13, intron 1 of 39) protein_coding-intron (ENSMUSG00000048960.13, intron 1 of 39) 9316 ENSMUSG00000048960.13 ENSMUSG00000048960 ENSMUST00000188154 Prex2 protein_coding Interval_151475 chr7 122940210 122940929 + 0 NA Intergenic Intergenic 29481 ENSMUSG00000108452.1 ENSMUSG00000108452 ENSMUST00000205998 4930413G21Rik TEC Interval_152656 chr7 135769815 135770566 + 0 NA intron (ENSMUSG00000109831.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000109831.1, intron 1 of 2) 27514 ENSMUSG00000109831.1 ENSMUSG00000109831 ENSMUST00000209706 Gm36431 lincRNA Interval_97093 chr2 131179322 131180555 + 0 NA exon (ENSMUSG00000068267.5, exon 1 of 1) protein_coding-exon (ENSMUSG00000068267.5, exon 1 of 1) 129 ENSMUSG00000068267.5 ENSMUSG00000068267 ENSMUST00000089510 Cenpb protein_coding Interval_12169 chr1 190447697 190449221 + 0 NA Intergenic Intergenic -3604 ENSMUSG00000103510.1 ENSMUSG00000103510 ENSMUST00000195170 Gm30725 lincRNA Interval_135762 chr6 47109314 47110187 + 0 NA intron (ENSMUSG00000039419.17, intron 20 of 23) protein_coding-intron (ENSMUSG00000039419.17, intron 20 of 23) 64594 ENSMUSG00000107952.1 ENSMUSG00000107952 ENSMUST00000203583 Gm6352 processed_pseudogene Interval_168300 chr9 78519759 78522042 + 0 NA exon (ENSMUSG00000111417.1, exon 1 of 2) lincRNA-exon (ENSMUSG00000111417.1, exon 1 of 2) 354 ENSMUSG00000111417.1 ENSMUSG00000111417 ENSMUST00000214586 Gm47430 lincRNA Interval_109968 chr3 152238148 152240113 + 0 NA intron (ENSMUSG00000039103.12, intron 3 of 3) protein_coding-intron (ENSMUSG00000039103.12, intron 10 of 12) 13673 ENSMUSG00000104621.1 ENSMUSG00000104621 ENSMUST00000197507 Gm43185 TEC Interval_100034 chr2 166674051 166676015 + 0 NA intron (ENSMUSG00000039621.13, intron 1 of 2) protein_coding-intron (ENSMUSG00000039621.13, intron 1 of 39) -7041 ENSMUSG00000089145.1 ENSMUSG00000089145 ENSMUST00000158520 Gm25265 misc_RNA Interval_96039 chr2 119350574 119351651 + 0 NA promoter-TSS (ENSMUSG00000027313.3) protein_coding-promoter-TSS (ENSMUSG00000027313.3) -117 ENSMUSG00000027313.3 ENSMUSG00000027313 ENSMUST00000028780 Chac1 protein_coding Interval_140410 chr6 117926631 117928348 + 0 NA Intergenic Intergenic 3788 ENSMUSG00000042079.13 ENSMUSG00000042079 ENSMUST00000180341 Hnrnpf protein_coding Interval_53647 chr14 60559994 60560628 + 0 NA intron (ENSMUSG00000101797.1, intron 2 of 2) lincRNA-intron (ENSMUSG00000101797.1, intron 2 of 2) 36591 ENSMUSG00000114408.1 ENSMUSG00000114408 ENSMUST00000224210 Gm47810 processed_pseudogene Interval_153401 chr7 144427479 144427772 + 0 NA Intergenic Intergenic -20692 ENSMUSG00000085745.1 ENSMUSG00000085745 ENSMUST00000125355 Gm14372 antisense Interval_64315 chr16 10427594 10428023 + 0 NA intron (ENSMUSG00000050908.12, intron 1 of 5) protein_coding-intron (ENSMUSG00000050908.12, intron 2 of 6) 15744 ENSMUSG00000022503.10 ENSMUSG00000022503 ENSMUST00000143617 Nubp1 protein_coding Interval_4190 chr1 71512315 71512727 + 0 NA Intergenic Intergenic -18707 ENSMUSG00000101617.1 ENSMUSG00000101617 ENSMUST00000186254 Gm6947 processed_pseudogene Interval_26193 chr11 54998103 54999181 + 0 NA intron (ENSMUSG00000018340.13, intron 13 of 19) protein_coding-intron (ENSMUSG00000018340.13, intron 13 of 24) 34773 ENSMUSG00000018340.13 ENSMUSG00000018340 ENSMUST00000148298 Anxa6 protein_coding Interval_66626 chr16 35729022 35729598 + 0 NA intron (ENSMUSG00000022848.8, intron 4 of 7) protein_coding-intron (ENSMUSG00000022848.8, intron 5 of 8) -7077 ENSMUSG00000087793.1 ENSMUSG00000087793 ENSMUST00000157168 Gm25967 snoRNA Interval_173006 chrX 61722277 61723995 + 0 NA Intergenic Intergenic 13639 ENSMUSG00000057615.5 ENSMUSG00000057615 ENSMUST00000075983 Ldoc1 protein_coding Interval_61912 chr15 85157831 85158249 + 0 NA Intergenic Intergenic -1908 ENSMUSG00000115924.1 ENSMUSG00000115924 ENSMUST00000229478 Gm19277 lincRNA Interval_119699 chr4 139309761 139311622 + 0 NA promoter-TSS (ENSMUSG00000028744.15) protein_coding-promoter-TSS (ENSMUSG00000028744.15) -26 ENSMUSG00000028744.15 ENSMUSG00000028744 ENSMUST00000141007 Pqlc2 protein_coding Interval_54872 chr14 75926351 75926804 + 0 NA intron (ENSMUSG00000067995.4, intron 5 of 7) protein_coding-intron (ENSMUSG00000067995.4, intron 5 of 7) -28432 ENSMUSG00000046523.5 ENSMUSG00000046523 ENSMUST00000050120 Kctd4 protein_coding Interval_68085 chr16 64903872 64904200 + 0 NA Intergenic Intergenic -7237 ENSMUSG00000097999.1 ENSMUSG00000097999 ENSMUST00000182707 Gm9061 processed_pseudogene Interval_50930 chr14 20826984 20827614 + 0 NA Intergenic Intergenic -9425 ENSMUSG00000021822.3 ENSMUSG00000021822 ENSMUST00000224141 Plau protein_coding Interval_119773 chr4 139871727 139873008 + 0 NA Intergenic Intergenic -38121 ENSMUSG00000087646.1 ENSMUSG00000087646 ENSMUST00000151651 Gm1667 lincRNA Interval_160650 chr8 111318996 111319244 + 0 NA TTS (ENSMUSG00000110484.1) processed_pseudogene-TTS (ENSMUSG00000110484.1) 1083 ENSMUSG00000110484.1 ENSMUSG00000110484 ENSMUST00000212417 Gm45712 processed_pseudogene Interval_73143 chr17 35061117 35061842 + 0 NA TTS (ENSMUSG00000007039.12) protein_coding-TTS (ENSMUSG00000007039.12) 2378 ENSMUSG00000007039.12 ENSMUSG00000007039 ENSMUST00000173562 Ddah2 protein_coding Interval_15387 chr10 45308028 45308224 + 0 NA intron (ENSMUSG00000019848.14, intron 1 of 3) protein_coding-intron (ENSMUSG00000019848.14, intron 1 of 3) -9855 ENSMUSG00000111526.1 ENSMUSG00000111526 ENSMUST00000213575 Gm47433 processed_pseudogene Interval_39483 chr12 88353677 88354872 + 0 NA exon (ENSMUSG00000113861.1, exon 1 of 1) processed_pseudogene-exon (ENSMUSG00000113861.1, exon 1 of 1) 412 ENSMUSG00000113861.1 ENSMUSG00000113861 ENSMUST00000220683 Gm6190 processed_pseudogene Interval_151823 chr7 126897640 126898746 + 0 NA promoter-TSS (ENSMUSG00000060538.14) protein_coding-promoter-TSS (ENSMUSG00000060538.14) -1317 ENSMUSG00000060538.14 ENSMUSG00000060538 ENSMUST00000134134 Tmem219 protein_coding Interval_21399 chr10 128362479 128362997 + 0 NA TTS (ENSMUSG00000005683.8) protein_coding-TTS (ENSMUSG00000005683.8) 6259 ENSMUSG00000039914.6 ENSMUSG00000039914 ENSMUST00000220111 Coq10a protein_coding Interval_108275 chr3 123218803 123219093 + 0 NA intron (ENSMUSG00000050315.14, intron 1 of 1) protein_coding-intron (ENSMUSG00000050315.14, intron 1 of 4) -7001 ENSMUSG00000106490.1 ENSMUSG00000106490 ENSMUST00000199138 Gm43283 TEC Interval_30365 chr11 93899312 93899895 + 0 NA intron (ENSMUSG00000059474.13, intron 3 of 7) protein_coding-intron (ENSMUSG00000059474.13, intron 1 of 11) -23460 ENSMUSG00000054079.12 ENSMUSG00000054079 ENSMUST00000134807 Utp18 protein_coding Interval_160552 chr8 110617970 110619315 + 0 NA promoter-TSS (ENSMUSG00000010936.11) protein_coding-promoter-TSS (ENSMUSG00000010936.11) -26938 ENSMUSG00000010936.11 ENSMUSG00000010936 ENSMUST00000213015 Vac14 protein_coding Interval_171448 chr9 118422267 118422534 + 0 NA Intergenic Intergenic -7436 ENSMUSG00000111843.1 ENSMUSG00000111843 ENSMUST00000213675 4933432G23Rik lincRNA Interval_160701 chr8 111697781 111698310 + 0 NA Intergenic Intergenic -7035 ENSMUSG00000031957.6 ENSMUSG00000031957 ENSMUST00000034435 Ctrb1 protein_coding Interval_130171 chr5 124729607 124730037 + 0 NA intron (ENSMUSG00000038011.15, intron 3 of 77) protein_coding-intron (ENSMUSG00000038011.15, intron 3 of 78) -4743 ENSMUSG00000106082.4 ENSMUSG00000106082 ENSMUST00000199356 4930404A12Rik antisense Interval_169364 chr9 96719236 96720266 + 0 NA promoter-TSS (ENSMUSG00000040433.16) protein_coding-promoter-TSS (ENSMUSG00000040433.16) 13923 ENSMUSG00000102097.1 ENSMUSG00000102097 ENSMUST00000186821 A930006L05Rik antisense Interval_84790 chr19 16753332 16754179 + 0 NA exon (ENSMUSG00000046230.11, exon 6 of 6) protein_coding-exon (ENSMUSG00000046230.11, exon 6 of 6) -26792 ENSMUSG00000046388.4 ENSMUSG00000046388 ENSMUST00000051080 Gm9806 pseudogene Interval_14847 chr10 40465616 40466334 + 0 NA intron (ENSMUSG00000038481.13, intron 5 of 11) protein_coding-intron (ENSMUSG00000038481.13, intron 5 of 12) -82917 ENSMUSG00000111251.1 ENSMUSG00000111251 ENSMUST00000214826 Gm18671 processed_pseudogene Interval_18307 chr10 84754756 84756057 + 0 NA promoter-TSS (ENSMUSG00000020037.15) protein_coding-promoter-TSS (ENSMUSG00000020037.15) -6832 ENSMUSG00000020037.15 ENSMUSG00000020037 ENSMUST00000095388 Rfx4 protein_coding Interval_114545 chr4 82418471 82418672 + 0 NA intron (ENSMUSG00000008575.17, intron 2 of 4) protein_coding-intron (ENSMUSG00000008575.17, intron 2 of 11) -20839 ENSMUSG00000084595.1 ENSMUSG00000084595 ENSMUST00000122646 n-R5s188 rRNA Interval_61584 chr15 82742386 82742830 + 0 NA promoter-TSS (ENSMUSG00000116071.1) unprocessed_pseudogene-promoter-TSS (ENSMUSG00000116071.1) -492 ENSMUSG00000116071.1 ENSMUSG00000116071 ENSMUST00000229208 Gm49433 unprocessed_pseudogene Interval_60039 chr15 64152189 64153614 + 0 NA exon (ENSMUSG00000022377.16, exon 13 of 31) protein_coding-exon (ENSMUSG00000022377.16, exon 13 of 31) -29095 ENSMUSG00000022377.16 ENSMUSG00000022377 ENSMUST00000175963 Asap1 protein_coding Interval_24248 chr11 31770344 31771905 + 0 NA Intergenic Intergenic 53400 ENSMUSG00000085772.7 ENSMUSG00000085772 ENSMUST00000126265 D630024D03Rik lincRNA Interval_27363 chr11 66984163 66985405 + 0 NA Intergenic Intergenic -17302 ENSMUSG00000085926.1 ENSMUSG00000085926 ENSMUST00000138819 Gm12299 processed_transcript Interval_125953 chr5 76183381 76184756 + 0 NA exon (ENSMUSG00000029234.13, exon 1 of 6) protein_coding-exon (ENSMUSG00000029234.13, exon 1 of 6) -12557 ENSMUSG00000083152.1 ENSMUSG00000083152 ENSMUST00000119356 Apc-ps1 transcribed_processed_pseudogene Interval_42412 chr13 13362379 13362647 + 0 NA intron (ENSMUSG00000021306.11, intron 5 of 7) protein_coding-intron (ENSMUSG00000021306.11, intron 5 of 6) 31051 ENSMUSG00000021306.11 ENSMUSG00000021306 ENSMUST00000221498 Gpr137b protein_coding Interval_158599 chr8 84697442 84697988 + 0 NA promoter-TSS (ENSMUSG00000001909.16) protein_coding-promoter-TSS (ENSMUSG00000001909.16) -3767 ENSMUSG00000034041.5 ENSMUSG00000034041 ENSMUST00000238338 Lyl1 protein_coding Interval_144792 chr7 28294352 28295040 + 0 NA promoter-TSS (ENSMUSG00000003436.11) protein_coding-promoter-TSS (ENSMUSG00000003436.11) -6514 ENSMUSG00000046750.17 ENSMUSG00000046750 ENSMUST00000156408 Selenov protein_coding Interval_38804 chr12 82477830 82479760 + 0 NA Intergenic Intergenic 17742 ENSMUSG00000094374.2 ENSMUSG00000094374 ENSMUST00000179295 Gm5435 processed_pseudogene Interval_142112 chr6 137207365 137207770 + 0 NA Intergenic Intergenic -60638 ENSMUSG00000107567.1 ENSMUSG00000107567 ENSMUST00000203679 4930480K02Rik TEC Interval_84243 chr19 8988854 8990765 + 0 NA intron (ENSMUSG00000069833.13, intron 1 of 6) protein_coding-intron (ENSMUSG00000069833.13, intron 1 of 5) 525 ENSMUSG00000069833.13 ENSMUSG00000069833 ENSMUST00000237033 Ahnak protein_coding Interval_163327 chr9 20891452 20893826 + 0 NA promoter-TSS (ENSMUSG00000118421.1) unitary_pseudogene-promoter-TSS (ENSMUSG00000118421.1) -604 ENSMUSG00000118421.1 ENSMUSG00000118421 ENSMUST00000238741 Gm50491 unitary_pseudogene Interval_77904 chr18 5210532 5211229 + 0 NA exon (ENSMUSG00000050945.8, exon 5 of 5) protein_coding-exon (ENSMUSG00000050945.8, exon 5 of 5) -45149 ENSMUSG00000097888.2 ENSMUSG00000097888 ENSMUST00000180850 Gm26682 lincRNA Interval_11806 chr1 185571744 185572480 + 0 NA Intergenic Intergenic 84818 ENSMUSG00000102185.1 ENSMUSG00000102185 ENSMUST00000192616 5033404E19Rik transcribed_processed_pseudogene Interval_59659 chr15 57648165 57648726 + 0 NA Intergenic Intergenic -47284 ENSMUSG00000071757.10 ENSMUSG00000071757 ENSMUST00000160990 Zhx2 protein_coding Interval_19617 chr10 105818044 105819002 + 0 NA intron (ENSMUSG00000036009.16, intron 6 of 12) protein_coding-intron (ENSMUSG00000036009.16, intron 5 of 11) -9656 ENSMUSG00000112820.1 ENSMUSG00000112820 ENSMUST00000218986 Gm48298 TEC Interval_139623 chr6 103622363 103622586 + 0 NA intron (ENSMUSG00000030077.11, intron 2 of 26) protein_coding-intron (ENSMUSG00000030077.11, intron 2 of 26) 6511 ENSMUSG00000107823.1 ENSMUSG00000107823 ENSMUST00000204200 Gm44436 TEC Interval_15141 chr10 42860214 42860910 + 0 NA promoter-TSS (ENSMUSG00000044770.14) protein_coding-promoter-TSS (ENSMUSG00000044770.14) 19 ENSMUSG00000044770.14 ENSMUSG00000044770 ENSMUST00000127675 Scml4 protein_coding Interval_127929 chr5 109279575 109279853 + 0 NA Intergenic Intergenic 17930 ENSMUSG00000091375.2 ENSMUSG00000091375 ENSMUST00000233282 Vmn2r15 protein_coding Interval_159515 chr8 95196048 95196381 + 0 NA intron (ENSMUSG00000031788.14, intron 1 of 4) protein_coding-intron (ENSMUSG00000031788.14, intron 1 of 4) 57904 ENSMUSG00000110475.1 ENSMUSG00000110475 ENSMUST00000212925 Gm31036 antisense Interval_33333 chr11 115976443 115976647 + 0 NA intron (ENSMUSG00000020758.15, intron 1 of 39) protein_coding-intron (ENSMUSG00000020758.15, intron 2 of 40) 1820 ENSMUSG00000020758.15 ENSMUSG00000020758 ENSMUST00000130286 Itgb4 protein_coding Interval_155351 chr8 32198413 32198856 + 0 NA intron (ENSMUSG00000062991.9, intron 1 of 12) protein_coding-intron (ENSMUSG00000062991.9, intron 1 of 8) 12505 ENSMUSG00000089370.1 ENSMUSG00000089370 ENSMUST00000158745 Gm22140 snRNA Interval_53893 chr14 63166682 63167096 + 0 NA intron (ENSMUSG00000021273.11, intron 3 of 9) protein_coding-intron (ENSMUSG00000021273.11, intron 1 of 7) -1964 ENSMUSG00000021273.11 ENSMUSG00000021273 ENSMUST00000224267 Fdft1 protein_coding Interval_32003 chr11 104395530 104395828 + 0 NA intron (ENSMUSG00000018412.16, intron 2 of 13) protein_coding-intron (ENSMUSG00000018412.16, intron 3 of 14) 29621 ENSMUSG00000106014.1 ENSMUSG00000106014 ENSMUST00000195891 Gm47315 miRNA Interval_66306 chr16 33034523 33036474 + 0 NA intron (ENSMUSG00000035578.16, intron 4 of 7) processed_transcript-intron (ENSMUSG00000078489.2, intron 1 of 1) 14372 ENSMUSG00000035578.16 ENSMUSG00000035578 ENSMUST00000126793 Iqcg protein_coding Interval_32898 chr11 112889558 112889949 + 0 NA Intergenic Intergenic 64574 ENSMUSG00000020624.3 ENSMUSG00000020624 ENSMUST00000153429 4933434M16Rik lincRNA Interval_155468 chr8 33777486 33780248 + 0 NA Intergenic Intergenic -31097 ENSMUSG00000094500.2 ENSMUSG00000094500 ENSMUST00000179364 Smim18 protein_coding Interval_92643 chr2 61815079 61816310 + 0 NA Intergenic Intergenic 12764 ENSMUSG00000035033.15 ENSMUSG00000035033 ENSMUST00000131538 Tbr1 protein_coding Interval_70647 chr17 12791758 12792112 + 0 NA promoter-TSS (ENSMUSG00000117030.1) lincRNA-promoter-TSS (ENSMUSG00000117030.1) -275 ENSMUSG00000117030.1 ENSMUSG00000117030 ENSMUST00000232857 Gm49959 lincRNA Interval_19882 chr10 110899846 110900043 + 0 NA Intergenic Intergenic -3426 ENSMUSG00000101801.6 ENSMUSG00000101801 ENSMUST00000190237 1700020G17Rik antisense Interval_97717 chr2 143207395 143207624 + 0 NA Intergenic Intergenic -55879 ENSMUSG00000083047.1 ENSMUSG00000083047 ENSMUST00000118582 Gm14082 processed_pseudogene Interval_159346 chr8 93952438 93953206 + 0 NA promoter-TSS (ENSMUSG00000031748.16) protein_coding-promoter-TSS (ENSMUSG00000031748.16) -12974 ENSMUSG00000031748.16 ENSMUSG00000031748 ENSMUST00000212008 Gnao1 protein_coding Interval_146406 chr7 45720286 45722317 + 0 NA promoter-TSS (ENSMUSG00000054161.12) protein_coding-promoter-TSS (ENSMUSG00000054161.12) 2092 ENSMUSG00000059070.16 ENSMUSG00000059070 ENSMUST00000209723 Rpl18 protein_coding Interval_27664 chr11 69368218 69369359 + 0 NA intron (ENSMUSG00000018474.18, intron 1 of 39) protein_coding-intron (ENSMUSG00000018474.18, intron 1 of 38) -18127 ENSMUSG00000087881.1 ENSMUSG00000087881 ENSMUST00000157256 Gm22442 scaRNA Interval_100557 chr2 170117543 170117746 + 0 NA intron (ENSMUSG00000052056.14, intron 3 of 6) protein_coding-intron (ENSMUSG00000052056.14, intron 2 of 5) 30459 ENSMUSG00000052056.14 ENSMUSG00000052056 ENSMUST00000149318 Zfp217 protein_coding Interval_131234 chr5 135929111 135929463 + 0 NA intron (ENSMUSG00000051391.9, intron 1 of 2) protein_coding-intron (ENSMUSG00000051391.9, intron 1 of 1) 5267 ENSMUSG00000051391.9 ENSMUSG00000051391 ENSMUST00000126192 Ywhag protein_coding Interval_123695 chr5 34578455 34578805 + 0 NA intron (ENSMUSG00000029106.14, intron 1 of 17) protein_coding-intron (ENSMUSG00000029106.14, intron 1 of 15) 3542 ENSMUSG00000107128.1 ENSMUSG00000107128 ENSMUST00000202995 Gm42867 TEC Interval_88093 chr19 59015118 59015346 + 0 NA intron (ENSMUSG00000041362.17, intron 7 of 7) protein_coding-intron (ENSMUSG00000041362.17, intron 11 of 16) 23053 ENSMUSG00000041362.17 ENSMUSG00000041362 ENSMUST00000237215 Shtn1 protein_coding Interval_85245 chr19 24142828 24143039 + 0 NA exon (ENSMUSG00000024812.11, exon 1 of 5) protein_coding-exon (ENSMUSG00000024812.11, exon 1 of 5) 4134 ENSMUSG00000024812.11 ENSMUSG00000024812 ENSMUST00000237550 Tjp2 protein_coding Interval_103839 chr3 53554720 53555857 + 0 NA intron (ENSMUSG00000037016.11, intron 6 of 23) protein_coding-intron (ENSMUSG00000037016.11, intron 6 of 23) -32268 ENSMUSG00000037016.11 ENSMUSG00000037016 ENSMUST00000199323 Frem2 protein_coding Interval_39403 chr12 87199361 87200682 + 0 NA promoter-TSS (ENSMUSG00000090812.8) protein_coding-promoter-TSS (ENSMUSG00000090812.8) 298 ENSMUSG00000090812.8 ENSMUSG00000090812 ENSMUST00000169669 Samd15 protein_coding Interval_61474 chr15 81845485 81846379 + 0 NA Intergenic Intergenic -2219 ENSMUSG00000069439.3 ENSMUSG00000069439 ENSMUST00000092020 Gm8444 processed_pseudogene Interval_35287 chr12 19853356 19854365 + 0 NA Intergenic Intergenic 11635 ENSMUSG00000113411.1 ENSMUSG00000113411 ENSMUST00000223086 Gm48643 processed_pseudogene Interval_173137 chrX 73312489 73312699 + 0 NA promoter-TSS (ENSMUSG00000081253.1) processed_pseudogene-promoter-TSS (ENSMUSG00000081253.1) -609 ENSMUSG00000081253.1 ENSMUSG00000081253 ENSMUST00000117684 Gm8501 processed_pseudogene Interval_81957 chr18 66410078 66410789 + 0 NA Intergenic Intergenic -3523 ENSMUSG00000118228.1 ENSMUSG00000118228 ENSMUST00000236577 Gm50153 TEC Interval_97565 chr2 139919167 139919486 + 0 NA intron (ENSMUSG00000039033.11, intron 10 of 13) protein_coding-intron (ENSMUSG00000039033.11, intron 10 of 13) 56029 ENSMUSG00000084207.1 ENSMUSG00000084207 ENSMUST00000120773 Gm14070 processed_pseudogene Interval_113903 chr4 59760007 59761246 + 0 NA exon (ENSMUSG00000045071.14, exon 4 of 4) protein_coding-exon (ENSMUSG00000045071.14, exon 4 of 4) 27368 ENSMUSG00000045071.14 ENSMUSG00000045071 ENSMUST00000221633 E130308A19Rik protein_coding Interval_138809 chr6 92090754 92092632 + 0 NA promoter-TSS (ENSMUSG00000005893.14) protein_coding-promoter-TSS (ENSMUSG00000005893.14) 24264 ENSMUSG00000034037.14 ENSMUSG00000034037 ENSMUST00000130369 Fgd5 protein_coding Interval_65479 chr16 22617694 22618513 + 0 NA intron (ENSMUSG00000022861.17, intron 2 of 5) protein_coding-intron (ENSMUSG00000022861.17, intron 2 of 23) 12777 ENSMUSG00000098448.1 ENSMUSG00000098448 ENSMUST00000184329 Mir6362 miRNA Interval_78272 chr18 11110450 11111532 + 0 NA Intergenic Intergenic 57947 ENSMUSG00000005836.10 ENSMUSG00000005836 ENSMUST00000234971 Gata6 protein_coding Interval_14584 chr10 36565506 36565730 + 0 NA intron (ENSMUSG00000044499.11, intron 2 of 5) protein_coding-intron (ENSMUSG00000044499.11, intron 2 of 5) 48456 ENSMUSG00000111231.1 ENSMUSG00000111231 ENSMUST00000214665 Gm47054 TEC Interval_157607 chr8 71679602 71680329 + 0 NA exon (ENSMUSG00000031805.17, exon 5 of 22) protein_coding-exon (ENSMUSG00000031805.17, exon 5 of 22) 3413 ENSMUSG00000031805.17 ENSMUSG00000031805 ENSMUST00000130624 Jak3 protein_coding Interval_44103 chr13 40906370 40906940 + 0 NA TTS (ENSMUSG00000114662.1) antisense-TTS (ENSMUSG00000114662.1) 5552 ENSMUSG00000114601.1 ENSMUSG00000114601 ENSMUST00000225964 Gm48188 processed_pseudogene Interval_143023 chr6 148564086 148564601 + 0 NA Intergenic Intergenic 49966 ENSMUSG00000070995.10 ENSMUSG00000070995 ENSMUST00000150112 Gm6313 lincRNA Interval_77912 chr18 5422745 5423794 + 0 NA Intergenic Intergenic -52787 ENSMUSG00000117617.1 ENSMUSG00000117617 ENSMUST00000234572 Gm50065 lincRNA Interval_163294 chr9 20658256 20658615 + 0 NA intron (ENSMUSG00000032171.7, intron 2 of 3) protein_coding-intron (ENSMUSG00000032171.7, intron 2 of 3) 6340 ENSMUSG00000032171.7 ENSMUSG00000032171 ENSMUST00000034689 Pin1 protein_coding Interval_9855 chr1 163193922 163194091 + 0 NA Intergenic Intergenic 75779 ENSMUSG00000089174.1 ENSMUSG00000089174 ENSMUST00000158549 Gm22434 snoRNA Interval_143301 chr7 5022569 5022800 + 0 NA exon (ENSMUSG00000074405.8, exon 3 of 3) protein_coding-exon (ENSMUSG00000074405.8, exon 3 of 3) 2108 ENSMUSG00000074405.8 ENSMUSG00000074405 ENSMUST00000207193 Zfp865 protein_coding Interval_26429 chr11 57808005 57808542 + 0 NA intron (ENSMUSG00000020519.5, intron 3 of 3) protein_coding-intron (ENSMUSG00000020519.5, intron 3 of 3) 6636 ENSMUSG00000020519.5 ENSMUSG00000020519 ENSMUST00000020826 Sap30l protein_coding Interval_33692 chr11 117939768 117940130 + 0 NA Intergenic Intergenic 18044 ENSMUSG00000082562.1 ENSMUSG00000082562 ENSMUST00000121028 Gm11726 processed_pseudogene Interval_116450 chr4 112514368 112514798 + 0 NA intron (ENSMUSG00000081166.1, intron 1 of 1) unprocessed_pseudogene-intron (ENSMUSG00000081166.1, intron 1 of 1) 1843 ENSMUSG00000081166.1 ENSMUSG00000081166 ENSMUST00000122223 Gm12819 unprocessed_pseudogene Interval_171612 chr9 119544817 119545010 + 0 NA intron (ENSMUSG00000032511.17, intron 5 of 27) protein_coding-intron (ENSMUSG00000032511.17, intron 4 of 26) 18590 ENSMUSG00000032511.17 ENSMUSG00000032511 ENSMUST00000138934 Scn5a protein_coding Interval_23476 chr11 22829691 22831210 + 0 NA intron (ENSMUSG00000051650.11, intron 1 of 5) protein_coding-intron (ENSMUSG00000051650.11, intron 1 of 5) -8849 ENSMUSG00000092455.1 ENSMUSG00000092455 ENSMUST00000174690 Gm20456 processed_transcript Interval_38729 chr12 81665585 81665770 + 0 NA TTS (ENSMUSG00000042734.6) protein_coding-TTS (ENSMUSG00000042734.6) 34428 ENSMUSG00000042734.6 ENSMUSG00000042734 ENSMUST00000036116 Ttc9 protein_coding Interval_101058 chr2 174741836 174742034 + 0 NA Intergenic Intergenic -27987 ENSMUSG00000027524.9 ENSMUSG00000027524 ENSMUST00000162473 Edn3 protein_coding Interval_147004 chr7 57931357 57931654 + 0 NA Intergenic Intergenic -30818 ENSMUSG00000109339.1 ENSMUSG00000109339 ENSMUST00000208479 Gm18127 processed_pseudogene Interval_158326 chr8 81348915 81349986 + 0 NA intron (ENSMUSG00000037940.17, intron 1 of 24) protein_coding-intron (ENSMUSG00000037940.17, intron 1 of 23) 6888 ENSMUSG00000037940.17 ENSMUSG00000037940 ENSMUST00000165821 Inpp4b protein_coding Interval_124342 chr5 44226053 44227594 + 0 NA promoter-TSS (ENSMUSG00000046985.11) protein_coding-promoter-TSS (ENSMUSG00000046985.11) -206 ENSMUSG00000046985.11 ENSMUSG00000046985 ENSMUST00000196151 Tapt1 protein_coding Interval_22116 chr11 6436293 6436995 + 0 NA intron (ENSMUSG00000041126.16, intron 2 of 4) protein_coding-intron (ENSMUSG00000041126.16, intron 2 of 3) 7799 ENSMUSG00000041126.16 ENSMUSG00000041126 ENSMUST00000093346 H2az2 protein_coding Interval_124387 chr5 45431211 45432244 + 0 NA Intergenic Intergenic -2662 ENSMUSG00000105255.1 ENSMUSG00000105255 ENSMUST00000196216 Gm42413 antisense Interval_111657 chr4 25357600 25357968 + 0 NA Intergenic Intergenic -3255 ENSMUSG00000081786.1 ENSMUSG00000081786 ENSMUST00000121976 Gm11897 processed_pseudogene Interval_128366 chr5 112833398 112834287 + 0 NA intron (ENSMUSG00000072720.9, intron 13 of 16) protein_coding-intron (ENSMUSG00000072720.9, intron 18 of 43) 38654 ENSMUSG00000072720.9 ENSMUSG00000072720 ENSMUST00000183273 Myo18b protein_coding Interval_99427 chr2 160992302 160992775 + 0 NA intron (ENSMUSG00000057133.14, intron 1 of 1) protein_coding-intron (ENSMUSG00000057133.14, intron 17 of 36) -4239 ENSMUSG00000077795.1 ENSMUSG00000077795 ENSMUST00000104607 Gm25561 snoRNA Interval_10749 chr1 174103973 174104320 + 0 NA TTS (ENSMUSG00000059371.4) protein_coding-TTS (ENSMUSG00000059371.4) -6754 ENSMUSG00000103863.2 ENSMUSG00000103863 ENSMUST00000195257 Gm37417 unprocessed_pseudogene Interval_10391 chr1 170292429 170293123 + 0 NA Intergenic Intergenic 13556 ENSMUSG00000102752.1 ENSMUSG00000102752 ENSMUST00000179801 Gm7694 protein_coding Interval_69970 chr17 3610997 3611874 + 0 NA Intergenic Intergenic 53611 ENSMUSG00000116852.1 ENSMUSG00000116852 ENSMUST00000231344 1700102H20Rik lincRNA Interval_93786 chr2 76879227 76880331 + 0 NA intron (ENSMUSG00000051747.15, intron 17 of 50) protein_coding-intron (ENSMUSG00000051747.15, intron 46 of 190) -42965 ENSMUSG00000051747.15 ENSMUSG00000051747 ENSMUST00000147048 Ttn protein_coding Interval_80014 chr18 36651682 36651898 + 0 NA intron (ENSMUSG00000024483.19, intron 29 of 33) protein_coding-intron (ENSMUSG00000024483.19, intron 29 of 33) 3930 ENSMUSG00000117942.1 ENSMUSG00000117942 ENSMUST00000140061 Maskbp3 protein_coding Interval_47382 chr13 82628341 82629452 + 0 NA Intergenic Intergenic 69437 ENSMUSG00000106655.1 ENSMUSG00000106655 ENSMUST00000198795 Mir3961 miRNA Interval_137373 chr6 71761279 71761546 + 0 NA exon (ENSMUSG00000052852.8, exon 3 of 7) protein_coding-exon (ENSMUSG00000052852.8, exon 3 of 7) -29256 ENSMUSG00000108802.1 ENSMUSG00000108802 ENSMUST00000206120 Gm44769 TEC Interval_987 chr1 13645964 13646444 + 0 NA intron (ENSMUSG00000025937.6, intron 3 of 6) protein_coding-intron (ENSMUSG00000025937.6, intron 3 of 6) -3456 ENSMUSG00000102982.1 ENSMUSG00000102982 ENSMUST00000194537 Gm38319 TEC Interval_159069 chr8 89387475 89388016 + 0 NA Intergenic Intergenic -200185 ENSMUSG00000069962.3 ENSMUSG00000069962 ENSMUST00000093326 Gm5356 processed_pseudogene Interval_39183 chr12 85652646 85653174 + 0 NA Intergenic Intergenic -9532 ENSMUSG00000113249.1 ENSMUSG00000113249 ENSMUST00000222443 Gm33312 processed_pseudogene Interval_151814 chr7 126821915 126823036 + 0 NA promoter-TSS (ENSMUSG00000058966.13) protein_coding-promoter-TSS (ENSMUSG00000058966.13) -2178 ENSMUSG00000058966.13 ENSMUSG00000058966 ENSMUST00000207020 Fam57b protein_coding Interval_13744 chr10 21715900 21716369 + 0 NA Intergenic Intergenic -27733 ENSMUSG00000099749.1 ENSMUSG00000099749 ENSMUST00000189792 Gm29323 lincRNA Interval_1834 chr1 34068117 34068832 + 0 NA intron (ENSMUSG00000026131.20, intron 1 of 97) protein_coding-intron (ENSMUSG00000026131.20, intron 1 of 97) -8753 ENSMUSG00000026131.20 ENSMUSG00000026131 ENSMUST00000182507 Dst protein_coding Interval_33219 chr11 115296841 115298183 + 0 NA promoter-TSS (ENSMUSG00000044788.10) protein_coding-promoter-TSS (ENSMUSG00000044788.10) 151 ENSMUSG00000044788.10 ENSMUSG00000044788 ENSMUST00000141006 Fads6 protein_coding Interval_54999 chr14 76764332 76765573 + 0 NA Intergenic Intergenic 4821 ENSMUSG00000115709.1 ENSMUSG00000115709 ENSMUST00000228541 4930431P22Rik lincRNA Interval_18983 chr10 93568383 93569129 + 0 NA intron (ENSMUSG00000036168.15, intron 2 of 3) protein_coding-intron (ENSMUSG00000036168.15, intron 9 of 15) 13875 ENSMUSG00000036168.15 ENSMUSG00000036168 ENSMUST00000128786 Ccdc38 protein_coding Interval_55106 chr14 78152474 78153362 + 0 NA Intergenic Intergenic 38560 ENSMUSG00000087932.1 ENSMUSG00000087932 ENSMUST00000157307 Mir1971 miRNA Interval_17892 chr10 80621975 80623091 + 0 NA promoter-TSS (ENSMUSG00000003345.16) protein_coding-promoter-TSS (ENSMUSG00000003345.16) 13273 ENSMUSG00000099283.1 ENSMUSG00000099283 ENSMUST00000184456 Mir6912 miRNA Interval_16341 chr10 62339850 62340876 + 0 NA promoter-TSS (ENSMUSG00000085347.1) antisense-promoter-TSS (ENSMUSG00000085347.1) -244 ENSMUSG00000085347.1 ENSMUSG00000085347 ENSMUST00000142968 Hk1os antisense Interval_98932 chr2 156094997 156097933 + 0 NA exon (ENSMUSG00000089824.10, exon 3 of 3) protein_coding-exon (ENSMUSG00000089824.10, exon 3 of 3) -10174 ENSMUSG00000103285.1 ENSMUSG00000103285 ENSMUST00000192167 Gm37274 TEC Interval_33986 chr11 119851472 119851674 + 0 NA intron (ENSMUSG00000025583.15, intron 16 of 32) protein_coding-intron (ENSMUSG00000025583.15, intron 17 of 33) -4736 ENSMUSG00000025583.15 ENSMUSG00000025583 ENSMUST00000131217 Rptor protein_coding Interval_162669 chr9 7710871 7711635 + 0 NA Intergenic Intergenic -11894 ENSMUSG00000110887.1 ENSMUSG00000110887 ENSMUST00000214564 Cbx3-ps8 processed_pseudogene Interval_34340 chr12 3503140 3503331 + 0 NA TTS (ENSMUSG00000037486.18) protein_coding-TTS (ENSMUSG00000037486.18) 20033 ENSMUSG00000112105.1 ENSMUSG00000112105 ENSMUST00000219719 Rps7-ps2 processed_pseudogene Interval_151330 chr7 121120130 121120666 + 0 NA intron (ENSMUSG00000034990.15, intron 2 of 17) protein_coding-intron (ENSMUSG00000034990.15, intron 12 of 28) 38748 ENSMUSG00000034990.15 ENSMUSG00000034990 ENSMUST00000163275 Otoa protein_coding Interval_46428 chr13 65186750 65187082 + 0 NA intron (ENSMUSG00000032999.10, intron 7 of 10) protein_coding-intron (ENSMUSG00000032999.10, intron 6 of 9) 19027 ENSMUSG00000032999.10 ENSMUSG00000032999 ENSMUST00000222273 Nlrp4f protein_coding Interval_69619 chr16 94652284 94652833 + 0 NA intron (ENSMUSG00000022897.15, intron 2 of 5) protein_coding-intron (ENSMUSG00000022897.15, intron 2 of 11) 32181 ENSMUSG00000081692.1 ENSMUSG00000081692 ENSMUST00000119372 Gm15971 processed_pseudogene Interval_124102 chr5 38309045 38309552 + 0 NA Intergenic Intergenic -10069 ENSMUSG00000039358.3 ENSMUSG00000039358 ENSMUST00000041646 Drd5 protein_coding Interval_102131 chr3 18290905 18291960 + 0 NA Intergenic Intergenic -7878 ENSMUSG00000104801.1 ENSMUSG00000104801 ENSMUST00000197097 Gm43834 TEC Interval_152958 chr7 140057839 140058612 + 0 NA Intergenic Intergenic -9137 ENSMUSG00000025469.10 ENSMUSG00000025469 ENSMUST00000172775 Msx3 protein_coding Interval_20530 chr10 118596186 118596707 + 0 NA Intergenic Intergenic -41094 ENSMUSG00000112230.2 ENSMUSG00000112230 ENSMUST00000220034 Ifngas1 lincRNA Interval_15259 chr10 43882120 43882372 + 0 NA exon (ENSMUSG00000019863.7, exon 8 of 11) protein_coding-exon (ENSMUSG00000019863.7, exon 8 of 11) 13295 ENSMUSG00000019863.7 ENSMUSG00000019863 ENSMUST00000217541 Qrsl1 protein_coding Interval_63282 chr15 100089717 100089933 + 0 NA TTS (ENSMUSG00000116021.1) TEC-TTS (ENSMUSG00000116021.1) 1932 ENSMUSG00000116021.1 ENSMUSG00000116021 ENSMUST00000230449 Gm49474 TEC Interval_46328 chr13 63979513 63981016 + 0 NA Intergenic Intergenic -33743 ENSMUSG00000113340.1 ENSMUSG00000113340 ENSMUST00000220900 Gm7695 processed_pseudogene Interval_77847 chr18 4436278 4436477 + 0 NA Intergenic Intergenic 37049 ENSMUSG00000117579.1 ENSMUSG00000117579 ENSMUST00000234374 Gm50023 lincRNA Interval_12315 chr1 191633560 191634893 + 0 NA Intergenic Intergenic 36579 ENSMUSG00000102970.1 ENSMUSG00000102970 ENSMUST00000194205 Gm37349 TEC Interval_45760 chr13 57779202 57780013 + 0 NA intron (ENSMUSG00000056222.15, intron 2 of 10) protein_coding-intron (ENSMUSG00000056222.15, intron 1 of 9) 128725 ENSMUSG00000056222.15 ENSMUSG00000056222 ENSMUST00000185905 Spock1 protein_coding Interval_97940 chr2 145941263 145941847 + 0 NA intron (ENSMUSG00000037143.17, intron 2 of 5) protein_coding-intron (ENSMUSG00000037143.17, intron 2 of 6) -6841 ENSMUSG00000001767.5 ENSMUSG00000001767 ENSMUST00000147904 Crnkl1 protein_coding Interval_158699 chr8 85397500 85398174 + 0 NA Intergenic Intergenic 16678 ENSMUSG00000109790.1 ENSMUSG00000109790 ENSMUST00000211717 Gm45594 processed_pseudogene Interval_161079 chr8 117339807 117340429 + 0 NA intron (ENSMUSG00000034390.16, intron 1 of 10) protein_coding-intron (ENSMUSG00000034390.16, intron 1 of 20) -83298 ENSMUSG00000034390.16 ENSMUSG00000034390 ENSMUST00000212884 Cmip protein_coding Interval_55851 chr14 101505246 101505618 + 0 NA intron (ENSMUSG00000033083.16, intron 2 of 20) protein_coding-intron (ENSMUSG00000033083.16, intron 2 of 13) 67582 ENSMUSG00000115319.1 ENSMUSG00000115319 ENSMUST00000228293 Gm34417 processed_pseudogene Interval_126171 chr5 81280012 81280522 + 0 NA intron (ENSMUSG00000037605.16, intron 3 of 10) protein_coding-intron (ENSMUSG00000037605.16, intron 3 of 26) 31018 ENSMUSG00000107226.1 ENSMUSG00000107226 ENSMUST00000201153 Gm43594 TEC Interval_139275 chr6 97784843 97785872 + 0 NA Intergenic Intergenic -5155 ENSMUSG00000089464.1 ENSMUSG00000089464 ENSMUST00000158839 Gm23703 snoRNA Interval_80095 chr18 37486463 37487415 + 0 NA exon (ENSMUSG00000046387.5, exon 1 of 1) protein_coding-exon (ENSMUSG00000046387.5, exon 1 of 1) 2144 ENSMUSG00000046387.5 ENSMUSG00000046387 ENSMUST00000053856 Pcdhb17 protein_coding Interval_350 chr1 4425304 4425505 + 0 NA Intergenic Intergenic -16163 ENSMUSG00000025900.13 ENSMUSG00000025900 ENSMUST00000027032 Rp1 protein_coding Interval_5357 chr1 87852777 87854074 + 0 NA TTS (ENSMUSG00000101942.1) antisense-TTS (ENSMUSG00000101942.1) 874 ENSMUSG00000101942.1 ENSMUSG00000101942 ENSMUST00000187511 Gm19582 antisense Interval_120342 chr4 148015023 148015941 + 0 NA intron (ENSMUSG00000029016.13, intron 13 of 22) protein_coding-intron (ENSMUSG00000029016.13, intron 13 of 22) -11468 ENSMUSG00000086806.1 ENSMUSG00000086806 ENSMUST00000154192 Gm13054 antisense Interval_45131 chr13 52561749 52563015 + 0 NA Intergenic Intergenic -21121 ENSMUSG00000021457.14 ENSMUSG00000021457 ENSMUST00000140339 Syk protein_coding Interval_53267 chr14 55692934 55693697 + 0 NA intron (ENSMUSG00000115154.1, intron 2 of 2) antisense-intron (ENSMUSG00000115154.1, intron 2 of 2) -9398 ENSMUSG00000088402.1 ENSMUSG00000088402 ENSMUST00000157777 Gm25887 snRNA Interval_16389 chr10 62687292 62687496 + 0 NA intron (ENSMUSG00000036923.12, intron 1 of 3) protein_coding-intron (ENSMUSG00000036923.12, intron 2 of 3) 4886 ENSMUSG00000105329.1 ENSMUSG00000105329 ENSMUST00000200383 Mir7215 miRNA Interval_28399 chr11 75655649 75657189 + 0 NA intron (ENSMUSG00000017774.19, intron 1 of 1) protein_coding-intron (ENSMUSG00000017774.19, intron 1 of 31) -13857 ENSMUSG00000017774.19 ENSMUSG00000017774 ENSMUST00000155027 Myo1c protein_coding Interval_150501 chr7 111259783 111260256 + 0 NA Intergenic Intergenic -106279 ENSMUSG00000109808.1 ENSMUSG00000109808 ENSMUST00000211799 5430402P08Rik lincRNA Interval_46237 chr13 62858620 62859479 + 0 NA promoter-TSS (ENSMUSG00000021456.8) protein_coding-promoter-TSS (ENSMUSG00000021456.8) -2740 ENSMUSG00000021456.8 ENSMUSG00000021456 ENSMUST00000222000 Fbp2 protein_coding Interval_1658 chr1 30847181 30848517 + 0 NA intron (ENSMUSG00000048874.15, intron 2 of 6) protein_coding-intron (ENSMUSG00000048874.15, intron 1 of 14) -11418 ENSMUSG00000103783.1 ENSMUSG00000103783 ENSMUST00000195437 Gm37522 TEC Interval_90385 chr2 30114859 30115139 + 0 NA intron (ENSMUSG00000039686.14, intron 1 of 7) protein_coding-intron (ENSMUSG00000039686.14, intron 1 of 15) 9586 ENSMUSG00000039686.14 ENSMUSG00000039686 ENSMUST00000149818 Zer1 protein_coding Interval_71652 chr17 25155152 25156062 + 0 NA intron (ENSMUSG00000036636.10, intron 17 of 24) protein_coding-intron (ENSMUSG00000036636.10, intron 17 of 24) -6854 ENSMUSG00000059562.14 ENSMUSG00000059562 ENSMUST00000182292 Ccdc154 protein_coding Interval_42216 chr13 10045710 10046153 + 0 NA intron (ENSMUSG00000046159.16, intron 3 of 4) protein_coding-intron (ENSMUSG00000046159.16, intron 3 of 4) 5917 ENSMUSG00000113502.1 ENSMUSG00000113502 ENSMUST00000222830 Gm47411 TEC Interval_44446 chr13 44877845 44878177 + 0 NA intron (ENSMUSG00000038518.15, intron 4 of 15) protein_coding-intron (ENSMUSG00000038518.15, intron 5 of 18) -39728 ENSMUSG00000088189.1 ENSMUSG00000088189 ENSMUST00000157564 Gm22213 snoRNA Interval_72521 chr17 30422766 30423733 + 0 NA intron (ENSMUSG00000062202.14, intron 6 of 6) protein_coding-intron (ENSMUSG00000062202.14, intron 6 of 11) -27149 ENSMUSG00000117835.1 ENSMUSG00000117835 ENSMUST00000237696 Gm50250 processed_transcript Interval_174644 chrX 161961566 161961874 + 0 NA intron (ENSMUSG00000059493.13, intron 1 of 8) protein_coding-intron (ENSMUSG00000059493.13, intron 1 of 7) 53497 ENSMUSG00000087571.1 ENSMUSG00000087571 ENSMUST00000154188 Gm15202 antisense Interval_165329 chr9 46334463 46334999 + 0 NA Intergenic Intergenic -5829 ENSMUSG00000097463.2 ENSMUSG00000097463 ENSMUST00000215349 4930448E22Rik processed_transcript Interval_64083 chr16 7425253 7426656 + 0 NA Intergenic Intergenic 232207 ENSMUSG00000008658.16 ENSMUSG00000008658 ENSMUST00000231031 Rbfox1 protein_coding Interval_51698 chr14 31483621 31483875 + 0 NA intron (ENSMUSG00000021891.8, intron 4 of 4) protein_coding-intron (ENSMUSG00000021891.8, intron 4 of 5) 9946 ENSMUSG00000021891.8 ENSMUSG00000021891 ENSMUST00000227852 Mettl6 protein_coding Interval_33462 chr11 116671104 116673354 + 0 NA promoter-TSS (ENSMUSG00000065640.1) snoRNA-promoter-TSS (ENSMUSG00000065640.1) -277 ENSMUSG00000065640.1 ENSMUSG00000065640 ENSMUST00000083706 Snord1c snoRNA Interval_3237 chr1 55058761 55059449 + 0 NA promoter-TSS (ENSMUSG00000025981.13) protein_coding-promoter-TSS (ENSMUSG00000025981.13) -534 ENSMUSG00000025981.13 ENSMUSG00000025981 ENSMUST00000185918 Coq10b protein_coding Interval_11127 chr1 179529631 179530472 + 0 NA intron (ENSMUSG00000026492.11, intron 1 of 1) protein_coding-intron (ENSMUSG00000026492.11, intron 7 of 7) 3616 ENSMUSG00000026492.11 ENSMUSG00000026492 ENSMUST00000129009 Tfb2m protein_coding Interval_171671 chr9 120060749 120061351 + 0 NA intron (ENSMUSG00000052336.7, intron 2 of 2) protein_coding-intron (ENSMUSG00000052336.7, intron 1 of 1) -7946 ENSMUSG00000111792.1 ENSMUSG00000111792 ENSMUST00000216918 Gm33858 antisense Interval_156736 chr8 57732529 57733508 + 0 NA Intergenic Intergenic 33244 ENSMUSG00000110162.1 ENSMUSG00000110162 ENSMUST00000209274 Gm45356 lincRNA Interval_172503 chrX 21762310 21762541 + 0 NA TTS (ENSMUSG00000101776.1) lincRNA-TTS (ENSMUSG00000101776.1) 11046 ENSMUSG00000101776.1 ENSMUSG00000101776 ENSMUST00000188966 Gm28268 lincRNA Interval_164739 chr9 40929856 40930228 + 0 NA exon (ENSMUSG00000111346.1, exon 1 of 1) processed_pseudogene-exon (ENSMUSG00000111346.1, exon 1 of 1) 384 ENSMUSG00000111346.1 ENSMUSG00000111346 ENSMUST00000217265 Gm18586 processed_pseudogene Interval_119599 chr4 138647708 138648605 + 0 NA Intergenic Intergenic -41626 ENSMUSG00000028753.12 ENSMUSG00000028753 ENSMUST00000133319 Vwa5b1 protein_coding Interval_85512 chr19 27734929 27735175 + 0 NA Intergenic Intergenic -31045 ENSMUSG00000088266.1 ENSMUSG00000088266 ENSMUST00000157641 Gm24782 snoRNA Interval_165009 chr9 43860307 43861384 + 0 NA Intergenic Intergenic 45157 ENSMUSG00000088044.1 ENSMUSG00000088044 ENSMUST00000157419 Gm23326 snRNA Interval_80645 chr18 45146644 45147212 + 0 NA exon (ENSMUSG00000118034.1, exon 1 of 1) processed_pseudogene-exon (ENSMUSG00000118034.1, exon 1 of 1) 198 ENSMUSG00000118034.1 ENSMUSG00000118034 ENSMUST00000235151 Gm4839 processed_pseudogene Interval_100738 chr2 172248231 172249995 + 0 NA exon (ENSMUSG00000038537.1, exon 1 of 1) protein_coding-exon (ENSMUSG00000038537.1, exon 1 of 1) 621 ENSMUSG00000038537.1 ENSMUSG00000038537 ENSMUST00000038532 Mc3r protein_coding Interval_171709 chr9 120377602 120378881 + 0 NA intron (ENSMUSG00000041794.13, intron 2 of 5) protein_coding-intron (ENSMUSG00000041794.13, intron 2 of 16) -6670 ENSMUSG00000082356.1 ENSMUSG00000082356 ENSMUST00000118890 Gm15565 processed_pseudogene Interval_159626 chr8 95848225 95849494 + 0 NA intron (ENSMUSG00000036534.6, intron 1 of 8) protein_coding-intron (ENSMUSG00000036534.6, intron 2 of 11) 4663 ENSMUSG00000036534.6 ENSMUSG00000036534 ENSMUST00000153835 Slc38a7 protein_coding Interval_29689 chr11 86075535 86075937 + 0 NA intron (ENSMUSG00000034329.16, intron 17 of 19) protein_coding-intron (ENSMUSG00000034329.16, intron 17 of 19) -109593 ENSMUSG00000080823.1 ENSMUSG00000080823 ENSMUST00000121382 Atp5l-ps2 processed_pseudogene Interval_8724 chr1 150099239 150100412 + 0 NA promoter-TSS (ENSMUSG00000032487.8) protein_coding-promoter-TSS (ENSMUSG00000032487.8) -8 ENSMUSG00000097028.2 ENSMUSG00000097028 ENSMUST00000181460 Ptgs2os processed_transcript Interval_49162 chr13 108917195 108917615 + 0 NA intron (ENSMUSG00000021699.17, intron 1 of 15) protein_coding-intron (ENSMUSG00000021699.17, intron 2 of 16) 57239 ENSMUSG00000021699.17 ENSMUSG00000021699 ENSMUST00000155459 Pde4d protein_coding Interval_31153 chr11 98479130 98479305 + 0 NA intron (ENSMUSG00000018168.8, intron 6 of 7) protein_coding-intron (ENSMUSG00000018168.8, intron 6 of 7) -1814 ENSMUSG00000018168.8 ENSMUSG00000018168 ENSMUST00000152400 Ikzf3 protein_coding Interval_173455 chrX 94023639 94023977 + 0 NA promoter-TSS (ENSMUSG00000081055.1) processed_pseudogene-promoter-TSS (ENSMUSG00000081055.1) -52 ENSMUSG00000081055.1 ENSMUSG00000081055 ENSMUST00000119319 Gm6987 processed_pseudogene Interval_90272 chr2 29468307 29469294 + 0 NA intron (ENSMUSG00000026799.15, intron 3 of 4) protein_coding-intron (ENSMUSG00000026799.15, intron 3 of 7) 6494 ENSMUSG00000098539.1 ENSMUSG00000098539 ENSMUST00000184068 Mir133c miRNA Interval_18997 chr10 93648135 93649504 + 0 NA intron (ENSMUSG00000020019.4, intron 2 of 9) protein_coding-intron (ENSMUSG00000020019.4, intron 2 of 9) 8138 ENSMUSG00000020019.4 ENSMUSG00000020019 ENSMUST00000020204 Ntn4 protein_coding Interval_131037 chr5 134701648 134702249 + 0 NA TTS (ENSMUSG00000029675.12) protein_coding-TTS (ENSMUSG00000029675.12) 25458 ENSMUSG00000072573.2 ENSMUSG00000072573 ENSMUST00000100641 Gm10369 antisense Interval_5756 chr1 91515096 91515812 + 0 NA intron (ENSMUSG00000034292.13, intron 7 of 15) protein_coding-intron (ENSMUSG00000034292.13, intron 7 of 14) 20807 ENSMUSG00000034292.13 ENSMUSG00000034292 ENSMUST00000187588 Traf3ip1 protein_coding Interval_21904 chr11 5098320 5100594 + 0 NA promoter-TSS (ENSMUSG00000034175.13) protein_coding-promoter-TSS (ENSMUSG00000034175.13) -19 ENSMUSG00000034175.13 ENSMUSG00000034175 ENSMUST00000129016 Rhbdd3 protein_coding Interval_98255 chr2 150525406 150526734 + 0 NA Intergenic Intergenic 4977 ENSMUSG00000081092.1 ENSMUSG00000081092 ENSMUST00000119514 Gm14128 processed_pseudogene Interval_145836 chr7 39963116 39963703 + 0 NA intron (ENSMUSG00000109083.2, intron 1 of 7) lincRNA-intron (ENSMUSG00000109083.2, intron 1 of 4) 14824 ENSMUSG00000109083.2 ENSMUSG00000109083 ENSMUST00000208803 Gm44992 lincRNA Interval_160411 chr8 109080936 109081190 + 0 NA intron (ENSMUSG00000097393.8, intron 1 of 5) lincRNA-intron (ENSMUSG00000097393.8, intron 1 of 4) 5818 ENSMUSG00000097393.8 ENSMUSG00000097393 ENSMUST00000181098 D030068K23Rik lincRNA Interval_86515 chr19 41317460 41318074 + 0 NA intron (ENSMUSG00000025017.10, intron 8 of 8) protein_coding-intron (ENSMUSG00000025017.10, intron 8 of 16) -53787 ENSMUSG00000025016.11 ENSMUSG00000025016 ENSMUST00000237871 Tm9sf3 protein_coding Interval_42210 chr13 9955545 9955734 + 0 NA intron (ENSMUSG00000046159.16, intron 4 of 4) protein_coding-intron (ENSMUSG00000046159.16, intron 4 of 4) 62729 ENSMUSG00000113146.1 ENSMUSG00000113146 ENSMUST00000221304 Gm47406 processed_pseudogene Interval_149457 chr7 98729230 98730431 + 0 NA Intergenic Intergenic -1070 ENSMUSG00000109149.1 ENSMUSG00000109149 ENSMUST00000208543 Gm19656 lincRNA Interval_76532 chr17 80808798 80810080 + 0 NA Intergenic Intergenic 81308 ENSMUSG00000054957.5 ENSMUSG00000054957 ENSMUST00000068277 Gm9959 pseudogene Interval_147632 chr7 70349675 70351577 + 0 NA Intergenic Intergenic -2930 ENSMUSG00000109364.1 ENSMUSG00000109364 ENSMUST00000209050 Gm44948 lincRNA Interval_97189 chr2 132136050 132136686 + 0 NA intron (ENSMUSG00000027340.15, intron 1 of 6) protein_coding-intron (ENSMUSG00000027340.15, intron 1 of 15) -8165 ENSMUSG00000086756.1 ENSMUSG00000086756 ENSMUST00000131603 Gm14051 antisense Interval_94103 chr2 84164095 84164316 + 0 NA Intergenic Intergenic 14150 ENSMUSG00000093115.1 ENSMUSG00000093115 ENSMUST00000175374 Gm25972 miRNA Interval_123879 chr5 36230456 36231347 + 0 NA intron (ENSMUSG00000029093.14, intron 1 of 7) protein_coding-intron (ENSMUSG00000029093.14, intron 1 of 26) 26880 ENSMUSG00000043430.5 ENSMUSG00000043430 ENSMUST00000052224 Psapl1 protein_coding Interval_15103 chr10 42591168 42593272 + 0 NA intron (ENSMUSG00000038280.12, intron 2 of 6) protein_coding-intron (ENSMUSG00000038280.12, intron 2 of 5) -11446 ENSMUSG00000019803.11 ENSMUSG00000019803 ENSMUST00000143891 Nr2e1 protein_coding Interval_86979 chr19 45308819 45309413 + 0 NA intron (ENSMUSG00000100417.2, intron 4 of 6) lincRNA-intron (ENSMUSG00000100417.2, intron 3 of 3) -4933 ENSMUSG00000100417.2 ENSMUSG00000100417 ENSMUST00000235311 Gm28578 lincRNA Interval_10379 chr1 170147742 170147980 + 0 NA intron (ENSMUSG00000026670.15, intron 8 of 9) protein_coding-intron (ENSMUSG00000026670.15, intron 9 of 10) 26905 ENSMUSG00000026670.15 ENSMUSG00000026670 ENSMUST00000191690 Uap1 protein_coding Interval_136239 chr6 52229073 52230808 + 0 NA TTS (ENSMUSG00000065443.1) miRNA-TTS (ENSMUSG00000065443.1) 225 ENSMUSG00000065443.1 ENSMUSG00000065443 ENSMUST00000083509 Mir196b miRNA Interval_169000 chr9 90124184 90125164 + 0 NA Intergenic Intergenic 5737 ENSMUSG00000096647.2 ENSMUSG00000096647 ENSMUST00000178436 Tmem41b-ps processed_pseudogene Interval_155681 chr8 36105622 36105879 + 0 NA exon (ENSMUSG00000050271.12, exon 3 of 3) protein_coding-exon (ENSMUSG00000050271.12, exon 3 of 3) 10889 ENSMUSG00000050271.12 ENSMUSG00000050271 ENSMUST00000150295 Prag1 protein_coding Interval_64956 chr16 17508265 17509537 + 0 NA promoter-TSS (ENSMUSG00000022761.12) protein_coding-promoter-TSS (ENSMUSG00000022761.12) -132 ENSMUSG00000022761.12 ENSMUSG00000022761 ENSMUST00000231746 Lztr1 protein_coding Interval_132032 chr5 142401084 142402101 + 0 NA promoter-TSS (ENSMUSG00000056493.9) protein_coding-promoter-TSS (ENSMUSG00000056493.9) 95 ENSMUSG00000056493.9 ENSMUSG00000056493 ENSMUST00000072837 Foxk1 protein_coding Interval_111639 chr4 25027726 25027984 + 0 NA intron (ENSMUSG00000085885.1, intron 1 of 4) processed_transcript-intron (ENSMUSG00000085885.1, intron 1 of 4) -60406 ENSMUSG00000046219.9 ENSMUSG00000046219 ENSMUST00000139588 C230012O17Rik processed_transcript Interval_37883 chr12 72783303 72783607 + 0 NA promoter-TSS (ENSMUSG00000021096.11) protein_coding-promoter-TSS (ENSMUSG00000021096.11) 22140 ENSMUSG00000021096.11 ENSMUSG00000021096 ENSMUST00000222920 Ppm1a protein_coding Interval_166055 chr9 56128113 56129031 + 0 NA intron (ENSMUSG00000032322.14, intron 13 of 13) protein_coding-intron (ENSMUSG00000032322.14, intron 14 of 14) 36905 ENSMUSG00000032324.11 ENSMUSG00000032324 ENSMUST00000216320 Tspan3 protein_coding Interval_54513 chr14 70380241 70380428 + 0 NA intron (ENSMUSG00000033644.5, intron 20 of 22) protein_coding-intron (ENSMUSG00000033644.5, intron 20 of 22) 20147 ENSMUSG00000058745.4 ENSMUSG00000058745 ENSMUST00000078149 Gm9174 processed_pseudogene Interval_32878 chr11 112737115 112737352 + 0 NA intron (ENSMUSG00000041674.16, intron 3 of 5) processed_transcript-intron (ENSMUSG00000041674.16, intron 3 of 5) -25893 ENSMUSG00000041674.16 ENSMUSG00000041674 ENSMUST00000148724 BC006965 processed_transcript Interval_128463 chr5 113452619 113453049 + 0 NA Intergenic Intergenic 95540 ENSMUSG00000053873.1 ENSMUSG00000053873 ENSMUST00000066573 Aym1 protein_coding Interval_97792 chr2 144119645 144120390 + 0 NA intron (ENSMUSG00000074758.10, intron 1 of 2) lincRNA-intron (ENSMUSG00000074758.10, intron 2 of 3) 23356 ENSMUSG00000082480.1 ENSMUSG00000082480 ENSMUST00000118911 Gm11687 processed_pseudogene Interval_26221 chr11 55210945 55211692 + 0 NA intron (ENSMUSG00000020261.15, intron 1 of 1) protein_coding-intron (ENSMUSG00000020261.15, intron 1 of 11) 6956 ENSMUSG00000020261.15 ENSMUSG00000020261 ENSMUST00000108867 Slc36a1 protein_coding Interval_43469 chr13 31625126 31627276 + 0 NA promoter-TSS (ENSMUSG00000038408.14) lincRNA-promoter-TSS (ENSMUSG00000038408.14) 342 ENSMUSG00000098266.1 ENSMUSG00000098266 ENSMUST00000184237 Gm27516 miRNA Interval_50757 chr14 19180071 19181167 + 0 NA Intergenic Intergenic 20924 ENSMUSG00000091557.2 ENSMUSG00000091557 ENSMUST00000171982 Gm8584 unprocessed_pseudogene Interval_75531 chr17 67813725 67813980 + 0 NA intron (ENSMUSG00000032796.8, intron 1 of 4) protein_coding-intron (ENSMUSG00000032796.8, intron 55 of 62) 37211 ENSMUSG00000090955.1 ENSMUSG00000090955 ENSMUST00000166414 Gm17097 processed_pseudogene Interval_119924 chr4 140960870 140961991 + 0 NA promoter-TSS (ENSMUSG00000009863.14) protein_coding-promoter-TSS (ENSMUSG00000009863.14) 29 ENSMUSG00000009863.14 ENSMUSG00000009863 ENSMUST00000125780 Sdhb protein_coding Interval_134340 chr6 25781379 25781754 + 0 NA intron (ENSMUSG00000029676.15, intron 2 of 14) protein_coding-intron (ENSMUSG00000029676.15, intron 5 of 9) 16451 ENSMUSG00000029676.15 ENSMUSG00000029676 ENSMUST00000147970 Pot1a protein_coding Interval_121401 chr4 155541277 155542073 + 0 NA TTS (ENSMUSG00000029064.15) protein_coding-TTS (ENSMUSG00000029064.15) 19213 ENSMUSG00000029064.15 ENSMUSG00000029064 ENSMUST00000176308 Gnb1 protein_coding Interval_71123 chr17 18901890 18902711 + 0 NA Intergenic Intergenic -12000 ENSMUSG00000091491.2 ENSMUSG00000091491 ENSMUST00000232219 Vmn2r97 protein_coding Interval_32988 chr11 113539740 113540076 + 0 NA intron (ENSMUSG00000041654.15, intron 3 of 4) protein_coding-intron (ENSMUSG00000041654.15, intron 3 of 10) 25871 ENSMUSG00000041654.15 ENSMUSG00000041654 ENSMUST00000123153 Slc39a11 protein_coding Interval_25807 chr11 51843705 51845167 + 0 NA exon (ENSMUSG00000020387.15, exon 3 of 3) protein_coding-exon (ENSMUSG00000020387.15, exon 3 of 3) 12689 ENSMUSG00000020387.15 ENSMUSG00000020387 ENSMUST00000151277 Jade2 protein_coding Interval_152754 chr7 137240788 137241762 + 0 NA TTS (ENSMUSG00000109722.1) antisense-TTS (ENSMUSG00000109722.1) 6592 ENSMUSG00000109722.1 ENSMUSG00000109722 ENSMUST00000211070 Gm10578 antisense Interval_66616 chr16 35681338 35682337 + 0 NA Intergenic Intergenic 23252 ENSMUSG00000052133.16 ENSMUSG00000052133 ENSMUST00000128966 Sema5b protein_coding Interval_58949 chr15 40626143 40626765 + 0 NA Intergenic Intergenic -28897 ENSMUSG00000022306.9 ENSMUSG00000022306 ENSMUST00000230319 Zfpm2 protein_coding Interval_82907 chr18 78768707 78769139 + 0 NA intron (ENSMUSG00000024548.11, intron 5 of 5) protein_coding-intron (ENSMUSG00000024548.11, intron 5 of 5) 120795 ENSMUSG00000088733.1 ENSMUSG00000088733 ENSMUST00000158108 Gm23895 snRNA Interval_13669 chr10 20866822 20867296 + 0 NA Intergenic Intergenic 11914 ENSMUSG00000111177.1 ENSMUSG00000111177 ENSMUST00000213102 Rps2-ps3 processed_pseudogene Interval_86423 chr19 40374684 40374955 + 0 NA intron (ENSMUSG00000025006.18, intron 2 of 4) protein_coding-intron (ENSMUSG00000025006.18, intron 4 of 21) 2055 ENSMUSG00000025006.18 ENSMUSG00000025006 ENSMUST00000225293 Sorbs1 protein_coding Interval_98985 chr2 156482058 156483246 + 0 NA intron (ENSMUSG00000027624.20, intron 1 of 21) protein_coding-intron (ENSMUSG00000027624.20, intron 1 of 21) -23742 ENSMUSG00000027624.20 ENSMUSG00000027624 ENSMUST00000137067 Epb41l1 protein_coding Interval_54006 chr14 64362895 64363150 + 0 NA intron (ENSMUSG00000054733.9, intron 1 of 2) protein_coding-intron (ENSMUSG00000054733.9, intron 6 of 10) 53926 ENSMUSG00000054733.9 ENSMUSG00000054733 ENSMUST00000209513 Msra protein_coding Interval_119989 chr4 141259174 141261815 + 0 NA Intergenic Intergenic 5522 ENSMUSG00000085774.1 ENSMUSG00000085774 ENSMUST00000127875 Gm13055 antisense Interval_112046 chr4 33481316 33481533 + 0 NA intron (ENSMUSG00000028274.17, intron 14 of 15) protein_coding-intron (ENSMUSG00000028274.17, intron 14 of 15) -28535 ENSMUSG00000081206.1 ENSMUSG00000081206 ENSMUST00000118608 Gm11935 processed_pseudogene Interval_55753 chr14 99583719 99584687 + 0 NA Intergenic Intergenic 35813 ENSMUSG00000115550.1 ENSMUSG00000115550 ENSMUST00000226602 Gm49225 lincRNA Interval_76975 chr17 85313363 85314315 + 0 NA intron (ENSMUSG00000071037.6, intron 3 of 10) protein_coding-intron (ENSMUSG00000071037.6, intron 3 of 10) -184794 ENSMUSG00000097803.1 ENSMUSG00000097803 ENSMUST00000181130 Rpl31-ps16 processed_pseudogene Interval_102572 chr3 27921726 27922227 + 0 NA Intergenic Intergenic -25608 ENSMUSG00000043164.3 ENSMUSG00000043164 ENSMUST00000058077 Tmem212 protein_coding Interval_25454 chr11 48690378 48691644 + 0 NA Intergenic Intergenic 6302 ENSMUSG00000088425.1 ENSMUSG00000088425 ENSMUST00000157800 Gm24422 snoRNA Interval_79080 chr18 24385653 24386363 + 0 NA Intergenic Intergenic 43162 ENSMUSG00000065532.1 ENSMUSG00000065532 ENSMUST00000083598 Mir187 miRNA Interval_166445 chr9 59548899 59550279 + 0 NA intron (ENSMUSG00000025232.8, intron 1 of 13) protein_coding-intron (ENSMUSG00000025232.8, intron 1 of 13) 10049 ENSMUSG00000025232.8 ENSMUSG00000025232 ENSMUST00000026262 Hexa protein_coding Interval_27076 chr11 62709274 62709699 + 0 NA intron (ENSMUSG00000005267.13, intron 6 of 7) protein_coding-intron (ENSMUSG00000005267.13, intron 6 of 7) 12268 ENSMUSG00000081852.1 ENSMUSG00000081852 ENSMUST00000119536 Gm12281 processed_pseudogene Interval_98613 chr2 153577121 153577369 + 0 NA Intergenic Intergenic 55486 ENSMUSG00000056941.17 ENSMUSG00000056941 ENSMUST00000109782 Commd7 protein_coding Interval_146321 chr7 45332702 45333901 + 0 NA exon (ENSMUSG00000038260.10, exon 2 of 2) protein_coding-exon (ENSMUSG00000038260.10, exon 2 of 2) 355 ENSMUSG00000038260.10 ENSMUSG00000038260 ENSMUST00000211411 Trpm4 protein_coding Interval_23020 chr11 19007510 19008581 + 0 NA intron (ENSMUSG00000020160.18, intron 6 of 11) protein_coding-intron (ENSMUSG00000020160.18, intron 6 of 12) -1085 ENSMUSG00000084085.2 ENSMUSG00000084085 ENSMUST00000143706 Gm16140 antisense Interval_54209 chr14 66282623 66283099 + 0 NA Intergenic Intergenic -14205 ENSMUSG00000022043.19 ENSMUSG00000022043 ENSMUST00000121006 Trim35 protein_coding Interval_155604 chr8 35101591 35102304 + 0 NA intron (ENSMUSG00000110130.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000110130.1, intron 1 of 2) 7402 ENSMUSG00000110130.1 ENSMUSG00000110130 ENSMUST00000211383 Gm34419 lincRNA Interval_170065 chr9 104167030 104168030 + 0 NA exon (ENSMUSG00000032560.14, exon 1 of 1) protein_coding-exon (ENSMUSG00000032560.14, exon 1 of 1) 2281 ENSMUSG00000099773.1 ENSMUSG00000099773 ENSMUST00000185927 Hmgb1-rs16 processed_pseudogene Interval_151059 chr7 118236890 118237191 + 0 NA intron (ENSMUSG00000030655.15, intron 1 of 9) protein_coding-intron (ENSMUSG00000030655.15, intron 1 of 62) -5683 ENSMUSG00000109045.1 ENSMUSG00000109045 ENSMUST00000207096 Gm45084 TEC Interval_166908 chr9 63861868 63863083 + 0 NA Intergenic Intergenic -35790 ENSMUSG00000110768.1 ENSMUSG00000110768 ENSMUST00000215935 Gm18541 processed_pseudogene Interval_18006 chr10 81328216 81329218 + 0 NA promoter-TSS (ENSMUSG00000034881.8) protein_coding-promoter-TSS (ENSMUSG00000034881.8) -14 ENSMUSG00000034881.8 ENSMUSG00000034881 ENSMUST00000220312 Tbxa2r protein_coding Interval_134830 chr6 31936615 31938855 + 0 NA Intergenic Intergenic -112511 ENSMUSG00000029766.7 ENSMUSG00000029766 ENSMUST00000156267 1700012A03Rik protein_coding Interval_116559 chr4 115634830 115635044 + 0 NA intron (ENSMUSG00000028713.17, intron 6 of 9) protein_coding-intron (ENSMUSG00000028713.17, intron 7 of 11) 6962 ENSMUSG00000028713.17 ENSMUSG00000028713 ENSMUST00000143237 Cyp4b1 protein_coding Interval_67254 chr16 44828376 44828647 + 0 NA intron (ENSMUSG00000062082.16, intron 2 of 6) protein_coding-intron (ENSMUSG00000062082.16, intron 1 of 5) 16778 ENSMUSG00000062082.16 ENSMUSG00000062082 ENSMUST00000114626 Cd200r4 protein_coding Interval_25781 chr11 51662077 51663201 + 0 NA Intergenic Intergenic 11685 ENSMUSG00000052563.13 ENSMUSG00000052563 ENSMUST00000064493 D930048N14Rik protein_coding Interval_129477 chr5 120457443 120458252 + 0 NA TTS (ENSMUSG00000029596.13) protein_coding-TTS (ENSMUSG00000029596.13) 9513 ENSMUSG00000029596.13 ENSMUSG00000029596 ENSMUST00000132916 Sdsl protein_coding Interval_134746 chr6 31175860 31176709 + 0 NA intron (ENSMUSG00000044471.12, intron 2 of 2) lincRNA-intron (ENSMUSG00000044471.12, intron 3 of 3) -28865 ENSMUSG00000103220.1 ENSMUSG00000103220 ENSMUST00000195025 Gm37728 TEC Interval_48889 chr13 104443091 104443290 + 0 NA intron (ENSMUSG00000046169.10, intron 18 of 24) protein_coding-intron (ENSMUSG00000046169.10, intron 18 of 24) 155355 ENSMUSG00000046169.10 ENSMUSG00000046169 ENSMUST00000224504 Adamts6 protein_coding Interval_167107 chr9 65332587 65333169 + 0 NA intron (ENSMUSG00000111712.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000111712.1, intron 1 of 1) 358 ENSMUSG00000111712.1 ENSMUSG00000111712 ENSMUST00000214251 Gm39363 lincRNA Interval_90276 chr2 29491105 29491479 + 0 NA intron (ENSMUSG00000026799.15, intron 4 of 4) protein_coding-intron (ENSMUSG00000026799.15, intron 4 of 7) -5219 ENSMUSG00000026799.15 ENSMUSG00000026799 ENSMUST00000147547 Med27 protein_coding Interval_100982 chr2 173809039 173809289 + 0 NA intron (ENSMUSG00000085938.1, intron 1 of 4) unprocessed_pseudogene-intron (ENSMUSG00000085938.1, intron 1 of 4) 38506 ENSMUSG00000085938.1 ENSMUSG00000085938 ENSMUST00000138925 Gm14371 unprocessed_pseudogene Interval_37366 chr12 65505897 65506129 + 0 NA Intergenic Intergenic -24239 ENSMUSG00000088441.1 ENSMUSG00000088441 ENSMUST00000157816 Gm25599 snRNA Interval_141715 chr6 133977221 133977912 + 0 NA Intergenic Intergenic -45157 ENSMUSG00000107771.1 ENSMUSG00000107771 ENSMUST00000203939 Gm8956 processed_pseudogene Interval_52027 chr14 34693624 34694626 + 0 NA promoter-TSS (ENSMUSG00000041408.18) protein_coding-promoter-TSS (ENSMUSG00000041408.18) -20362 ENSMUSG00000115007.1 ENSMUSG00000115007 ENSMUST00000228874 5830448L01Rik bidirectional_promoter_lncRNA Interval_26976 chr11 62010204 62011098 + 0 NA intron (ENSMUSG00000042331.13, intron 1 of 7) protein_coding-intron (ENSMUSG00000042331.13, intron 1 of 2) -8213 ENSMUSG00000042331.13 ENSMUSG00000042331 ENSMUST00000202179 Specc1 protein_coding Interval_22461 chr11 10505249 10505646 + 0 NA Intergenic Intergenic -128365 ENSMUSG00000084045.1 ENSMUSG00000084045 ENSMUST00000118697 Gm11997 processed_pseudogene Interval_79040 chr18 24129631 24130156 + 0 NA Intergenic Intergenic -7940 ENSMUSG00000047989.11 ENSMUSG00000047989 ENSMUST00000125169 Ino80c protein_coding Interval_107005 chr3 102799927 102800227 + 0 NA intron (ENSMUSG00000027858.13, intron 3 of 3) protein_coding-intron (ENSMUSG00000027858.13, intron 3 of 3) -15288 ENSMUSG00000105855.1 ENSMUSG00000105855 ENSMUST00000197999 Gm42681 antisense Interval_67348 chr16 46996153 46996417 + 0 NA Intergenic Intergenic -77913 ENSMUSG00000081624.1 ENSMUSG00000081624 ENSMUST00000117218 Gm6912 processed_pseudogene Interval_145913 chr7 41641075 41641316 + 0 NA intron (ENSMUSG00000074165.10, intron 2 of 5) protein_coding-intron (ENSMUSG00000074165.10, intron 1 of 3) -6389 ENSMUSG00000074165.10 ENSMUSG00000074165 ENSMUST00000170770 Zfp788 protein_coding Interval_67344 chr16 46757154 46757409 + 0 NA Intergenic Intergenic 219446 ENSMUSG00000116915.1 ENSMUSG00000116915 ENSMUST00000231611 Gm17900 processed_pseudogene Interval_101947 chr3 12779261 12779814 + 0 NA Intergenic Intergenic -76483 ENSMUSG00000095661.1 ENSMUSG00000095661 ENSMUST00000105727 Gm8935 transcribed_processed_pseudogene Interval_87735 chr19 55524722 55525353 + 0 NA intron (ENSMUSG00000024983.10, intron 8 of 8) protein_coding-intron (ENSMUSG00000024983.10, intron 7 of 7) 208710 ENSMUSG00000024983.10 ENSMUSG00000024983 ENSMUST00000224396 Vti1a protein_coding Interval_122313 chr5 21185837 21187107 + 0 NA intron (ENSMUSG00000039934.12, intron 1 of 26) protein_coding-intron (ENSMUSG00000039934.12, intron 1 of 30) -27537 ENSMUSG00000104920.1 ENSMUSG00000104920 ENSMUST00000199108 Gm43215 processed_pseudogene Interval_18145 chr10 83013718 83014310 + 0 NA intron (ENSMUSG00000034612.7, intron 1 of 2) protein_coding-intron (ENSMUSG00000034612.7, intron 1 of 2) 17681 ENSMUSG00000112084.1 ENSMUSG00000112084 ENSMUST00000218071 Gm10773 TEC Interval_91173 chr2 35652746 35653508 + 0 NA intron (ENSMUSG00000026883.17, intron 2 of 15) protein_coding-intron (ENSMUSG00000026883.17, intron 2 of 15) -57200 ENSMUSG00000026883.17 ENSMUSG00000026883 ENSMUST00000156669 Dab2ip protein_coding Interval_26418 chr11 57751334 57752231 + 0 NA intron (ENSMUSG00000020520.14, intron 4 of 11) protein_coding-intron (ENSMUSG00000020520.14, intron 4 of 11) 10482 ENSMUSG00000077155.1 ENSMUSG00000077155 ENSMUST00000103967 Gm24582 snRNA Interval_319 chr1 3852180 3853105 + 0 NA Intergenic Intergenic -68709 ENSMUSG00000088333.2 ENSMUSG00000088333 ENSMUST00000157708 Gm27396 snRNA Interval_16756 chr10 67979058 67980083 + 0 NA promoter-TSS (ENSMUSG00000037846.18) protein_coding-promoter-TSS (ENSMUSG00000037846.18) -128 ENSMUSG00000037846.18 ENSMUSG00000037846 ENSMUST00000123147 Rtkn2 protein_coding Interval_96901 chr2 129296713 129297876 + 0 NA promoter-TSS (ENSMUSG00000048327.6) protein_coding-promoter-TSS (ENSMUSG00000048327.6) -76 ENSMUSG00000085498.1 ENSMUSG00000085498 ENSMUST00000144178 Gm14023 processed_transcript Interval_145675 chr7 37259299 37260143 + 0 NA Intergenic Intergenic -39544 ENSMUSG00000099715.2 ENSMUSG00000099715 ENSMUST00000190250 Gm28077 lincRNA Interval_86260 chr19 38216484 38216829 + 0 NA intron (ENSMUSG00000054237.6, intron 4 of 8) protein_coding-intron (ENSMUSG00000054237.6, intron 4 of 13) 7482 ENSMUSG00000054237.6 ENSMUSG00000054237 ENSMUST00000238154 Fra10ac1 protein_coding Interval_49736 chr13 114341490 114342001 + 0 NA intron (ENSMUSG00000021764.8, intron 1 of 3) protein_coding-intron (ENSMUSG00000021764.8, intron 2 of 4) 46305 ENSMUSG00000021764.8 ENSMUSG00000021764 ENSMUST00000225978 Ndufs4 protein_coding Interval_85194 chr19 23652583 23653204 + 0 NA promoter-TSS (ENSMUSG00000033053.4) protein_coding-promoter-TSS (ENSMUSG00000033053.4) -81 ENSMUSG00000033053.4 ENSMUSG00000033053 ENSMUST00000035849 1700028P14Rik protein_coding Interval_139438 chr6 100186731 100187319 + 0 NA Intergenic Intergenic -43211 ENSMUSG00000107558.1 ENSMUSG00000107558 ENSMUST00000204605 2010109P13Rik TEC Interval_66426 chr16 33790591 33790967 + 0 NA intron (ENSMUSG00000090214.8, intron 2 of 2) antisense-intron (ENSMUSG00000090214.8, intron 2 of 2) -3258 ENSMUSG00000022824.12 ENSMUSG00000022824 ENSMUST00000023520 Muc13 protein_coding Interval_81223 chr18 56607975 56609279 + 0 NA Intergenic Intergenic -7692 ENSMUSG00000117812.1 ENSMUSG00000117812 ENSMUST00000235150 Gm50283 processed_pseudogene Interval_169533 chr9 98952275 98952667 + 0 NA exon (ENSMUSG00000097072.7, exon 5 of 8) processed_transcript-exon (ENSMUSG00000097072.7, exon 5 of 8) 2327 ENSMUSG00000097072.7 ENSMUSG00000097072 ENSMUST00000189148 Foxl2os processed_transcript Interval_52257 chr14 41072405 41073298 + 0 NA promoter-TSS (ENSMUSG00000021790.12) protein_coding-promoter-TSS (ENSMUSG00000021790.12) -60 ENSMUSG00000021790.12 ENSMUSG00000021790 ENSMUST00000161837 Dydc1 protein_coding Interval_139601 chr6 102311306 102312521 + 0 NA intron (ENSMUSG00000030075.10, intron 5 of 22) protein_coding-intron (ENSMUSG00000030075.10, intron 4 of 21) 45791 ENSMUSG00000107563.2 ENSMUSG00000107563 ENSMUST00000204857 4930587E11Rik antisense Interval_114987 chr4 88083985 88084195 + 0 NA Intergenic Intergenic -37950 ENSMUSG00000070077.2 ENSMUSG00000070077 ENSMUST00000093569 Mir491 miRNA Interval_34201 chr11 121253737 121254191 + 0 NA exon (ENSMUSG00000000056.7, exon 11 of 11) protein_coding-exon (ENSMUSG00000000056.7, exon 11 of 11) 9426 ENSMUSG00000000056.7 ENSMUSG00000000056 ENSMUST00000151088 Narf protein_coding Interval_34064 chr11 120271631 120272123 + 0 NA exon (ENSMUSG00000039741.15, exon 5 of 28) protein_coding-exon (ENSMUSG00000039741.15, exon 5 of 28) -2610 ENSMUSG00000104657.1 ENSMUSG00000104657 ENSMUST00000197891 Gm47297 miRNA Interval_166614 chr9 61318956 61319341 + 0 NA Intergenic Intergenic -25339 ENSMUSG00000111658.1 ENSMUSG00000111658 ENSMUST00000213377 B930092H01Rik lincRNA Interval_47840 chr13 93669679 93669974 + 0 NA intron (ENSMUSG00000042118.7, intron 2 of 7) protein_coding-intron (ENSMUSG00000042118.7, intron 2 of 7) 4476 ENSMUSG00000042118.7 ENSMUSG00000042118 ENSMUST00000015941 Bhmt2 protein_coding Interval_118492 chr4 132024687 132025515 + 0 NA intron (ENSMUSG00000028906.17, intron 1 of 20) protein_coding-intron (ENSMUSG00000028906.17, intron 1 of 20) -23077 ENSMUSG00000084869.1 ENSMUSG00000084869 ENSMUST00000132247 Gm13063 lincRNA Interval_104369 chr3 64283694 64284364 + 0 NA intron (ENSMUSG00000091572.9, intron 1 of 5) protein_coding-intron (ENSMUSG00000091572.9, intron 1 of 5) 5680 ENSMUSG00000091572.9 ENSMUSG00000091572 ENSMUST00000170244 Vmn2r3 protein_coding Interval_118269 chr4 129947644 129948123 + 0 NA intron (ENSMUSG00000028784.14, intron 5 of 13) protein_coding-intron (ENSMUSG00000028784.14, intron 5 of 13) 336 ENSMUSG00000028784.14 ENSMUSG00000028784 ENSMUST00000128007 Spocd1 protein_coding Interval_30824 chr11 96712558 96714335 + 0 NA TTS (ENSMUSG00000057058.16) protein_coding-TTS (ENSMUSG00000057058.16) -53356 ENSMUSG00000085242.1 ENSMUSG00000085242 ENSMUST00000124865 Gm11537 antisense Interval_73880 chr17 45172129 45172855 + 0 NA Intergenic Intergenic -8324 ENSMUSG00000117217.1 ENSMUSG00000117217 ENSMUST00000233124 Gm4766 processed_pseudogene Interval_121586 chr5 3633399 3634357 + 0 NA exon (ENSMUSG00000005907.14, exon 20 of 23) protein_coding-exon (ENSMUSG00000005907.14, exon 20 of 23) -1737 ENSMUSG00000005907.14 ENSMUSG00000005907 ENSMUST00000196432 Pex1 protein_coding Interval_99363 chr2 160233608 160233892 + 0 NA Intergenic Intergenic 100412 ENSMUSG00000074623.4 ENSMUSG00000074623 ENSMUST00000099127 Gm826 protein_coding Interval_95257 chr2 105290034 105290465 + 0 NA intron (ENSMUSG00000055312.2, intron 2 of 3) protein_coding-intron (ENSMUSG00000055312.2, intron 2 of 3) 65907 ENSMUSG00000055312.2 ENSMUSG00000055312 ENSMUST00000131060 Them7 protein_coding Interval_132269 chr5 143768381 143769093 + 0 NA TTS (ENSMUSG00000097287.3) lincRNA-TTS (ENSMUSG00000097287.3) -1303 ENSMUSG00000104708.1 ENSMUSG00000104708 ENSMUST00000199080 Gm42503 TEC Interval_47606 chr13 89918284 89919001 + 0 NA intron (ENSMUSG00000021615.13, intron 7 of 7) protein_coding-intron (ENSMUSG00000021615.13, intron 7 of 7) 8901 ENSMUSG00000089070.1 ENSMUSG00000089070 ENSMUST00000158445 Gm24498 snRNA Interval_80843 chr18 49058345 49058586 + 0 NA Intergenic Intergenic -4959 ENSMUSG00000118290.1 ENSMUSG00000118290 ENSMUST00000237787 Gm18993 processed_pseudogene Interval_70864 chr17 15460214 15460422 + 0 NA TTS (ENSMUSG00000116985.1) processed_pseudogene-TTS (ENSMUSG00000116985.1) 513 ENSMUSG00000116985.1 ENSMUSG00000116985 ENSMUST00000231639 Gm49669 processed_pseudogene Interval_158367 chr8 83046414 83046680 + 0 NA intron (ENSMUSG00000047747.10, intron 6 of 6) protein_coding-intron (ENSMUSG00000047747.10, intron 6 of 6) 40410 ENSMUSG00000109876.1 ENSMUSG00000109876 ENSMUST00000211485 Gm45449 antisense Interval_130635 chr5 129361171 129361449 + 0 NA Intergenic Intergenic -2810 ENSMUSG00000104681.1 ENSMUSG00000104681 ENSMUST00000199076 Gm43001 lincRNA Interval_8701 chr1 149097273 149097499 + 0 NA Intergenic Intergenic -8729 ENSMUSG00000102074.1 ENSMUSG00000102074 ENSMUST00000191166 Gm29020 lincRNA Interval_14146 chr10 28097766 28097957 + 0 NA intron (ENSMUSG00000019889.10, intron 1 of 2) protein_coding-intron (ENSMUSG00000019889.10, intron 1 of 31) -31671 ENSMUSG00000112432.1 ENSMUSG00000112432 ENSMUST00000218855 Gm18507 processed_pseudogene Interval_37400 chr12 66764637 66764861 + 0 NA intron (ENSMUSG00000034912.18, intron 3 of 15) protein_coding-intron (ENSMUSG00000034912.18, intron 3 of 16) -80841 ENSMUSG00000113501.1 ENSMUSG00000113501 ENSMUST00000222518 Gm18940 processed_pseudogene Interval_149836 chr7 101917528 101918697 + 0 NA intron (ENSMUSG00000064307.13, intron 1 of 3) protein_coding-intron (ENSMUSG00000064307.13, intron 3 of 5) 2662 ENSMUSG00000064307.13 ENSMUSG00000064307 ENSMUST00000106963 Lrrc51 protein_coding Interval_93322 chr2 71924134 71925531 + 0 NA Intergenic Intergenic -31221 ENSMUSG00000087345.1 ENSMUSG00000087345 ENSMUST00000133981 Gm13746 lincRNA Interval_77768 chr18 3368140 3369240 + 0 NA Intergenic Intergenic -14542 ENSMUSG00000024231.15 ENSMUSG00000024231 ENSMUST00000159443 Cul2 protein_coding Interval_111743 chr4 27132741 27133715 + 0 NA Intergenic Intergenic -6719 ENSMUSG00000083447.1 ENSMUSG00000083447 ENSMUST00000120562 Gm11904 processed_pseudogene Interval_9108 chr1 153652569 153653886 + 0 NA exon (ENSMUSG00000042671.12, exon 1 of 7) protein_coding-exon (ENSMUSG00000042671.12, exon 1 of 7) -12047 ENSMUSG00000042671.12 ENSMUSG00000042671 ENSMUST00000147794 Rgs8 protein_coding Interval_71527 chr17 24325253 24325535 + 0 NA intron (ENSMUSG00000035435.17, intron 8 of 30) protein_coding-intron (ENSMUSG00000035435.17, intron 7 of 29) 20725 ENSMUSG00000094175.1 ENSMUSG00000094175 ENSMUST00000116896 Gm24427 miRNA Interval_30805 chr11 96581941 96582827 + 0 NA exon (ENSMUSG00000057058.16, exon 5 of 5) protein_coding-exon (ENSMUSG00000057058.16, exon 5 of 5) 98602 ENSMUSG00000057058.16 ENSMUSG00000057058 ENSMUST00000123814 Skap1 protein_coding Interval_46739 chr13 69753553 69754277 + 0 NA Intergenic Intergenic -14026 ENSMUSG00000052981.6 ENSMUSG00000052981 ENSMUST00000065118 Ube2ql1 protein_coding Interval_109485 chr3 142861254 142861455 + 0 NA intron (ENSMUSG00000004591.16, intron 1 of 21) protein_coding-intron (ENSMUSG00000004591.16, intron 1 of 21) -20234 ENSMUSG00000106550.1 ENSMUSG00000106550 ENSMUST00000199962 Gm43646 processed_transcript Interval_35736 chr12 28749997 28752170 + 0 NA promoter-TSS (ENSMUSG00000020628.16) protein_coding-promoter-TSS (ENSMUSG00000020628.16) -654 ENSMUSG00000020628.16 ENSMUSG00000020628 ENSMUST00000221335 Trappc12 protein_coding Interval_149893 chr7 102316675 102317211 + 0 NA intron (ENSMUSG00000030987.5, intron 1 of 12) protein_coding-intron (ENSMUSG00000030987.5, intron 1 of 11) 48616 ENSMUSG00000030987.5 ENSMUSG00000030987 ENSMUST00000210544 Stim1 protein_coding Interval_85256 chr19 24194352 24195051 + 0 NA intron (ENSMUSG00000024812.11, intron 1 of 23) protein_coding-intron (ENSMUSG00000024812.11, intron 1 of 22) 40631 ENSMUSG00000118371.1 ENSMUSG00000118371 ENSMUST00000237530 Gm50308 processed_pseudogene Interval_147954 chr7 75847924 75849030 + 0 NA promoter-TSS (ENSMUSG00000055652.14) protein_coding-promoter-TSS (ENSMUSG00000055652.14) 80 ENSMUSG00000055652.14 ENSMUSG00000055652 ENSMUST00000205887 Klhl25 protein_coding Interval_50747 chr14 18932845 18933509 + 0 NA Intergenic Intergenic -39532 ENSMUSG00000058317.12 ENSMUSG00000058317 ENSMUST00000144873 Ube2e2 protein_coding Interval_99078 chr2 157037157 157038292 + 0 NA intron (ENSMUSG00000055485.6, intron 1 of 1) protein_coding-intron (ENSMUSG00000055485.6, intron 5 of 14) -10252 ENSMUSG00000055485.6 ENSMUSG00000055485 ENSMUST00000133571 Soga1 protein_coding Interval_14068 chr10 26454903 26455573 + 0 NA Intergenic Intergenic -37860 ENSMUSG00000112797.1 ENSMUSG00000112797 ENSMUST00000219589 Gm30034 lincRNA Interval_82453 chr18 74178611 74179066 + 0 NA Intergenic Intergenic 28909 ENSMUSG00000036223.16 ENSMUSG00000036223 ENSMUST00000237276 Ska1 protein_coding Interval_125681 chr5 73213085 73213534 + 0 NA promoter-TSS (ENSMUSG00000090561.2) sense_intronic-promoter-TSS (ENSMUSG00000090561.2) -666 ENSMUSG00000090561.2 ENSMUSG00000090561 ENSMUST00000168686 Gm17207 sense_intronic Interval_36867 chr12 54819819 54821362 + 0 NA Intergenic Intergenic -24903 ENSMUSG00000005656.9 ENSMUSG00000005656 ENSMUST00000219865 Snx6 protein_coding Interval_74665 chr17 55776986 55777241 + 0 NA intron (ENSMUSG00000032915.6, intron 2 of 16) protein_coding-intron (ENSMUSG00000032915.6, intron 2 of 16) -8642 ENSMUSG00000117045.1 ENSMUSG00000117045 ENSMUST00000233119 Gm18365 processed_pseudogene Interval_100194 chr2 167565764 167565964 + 0 NA intron (ENSMUSG00000085596.1, intron 2 of 3) processed_transcript-intron (ENSMUSG00000085596.1, intron 2 of 3) 12550 ENSMUSG00000085596.1 ENSMUSG00000085596 ENSMUST00000127006 Gm11476 processed_transcript Interval_117401 chr4 123474727 123475022 + 0 NA exon (ENSMUSG00000028649.21, exon 36 of 102) protein_coding-exon (ENSMUSG00000028649.21, exon 36 of 102) -15357 ENSMUSG00000089588.1 ENSMUSG00000089588 ENSMUST00000158963 Gm23548 misc_RNA Interval_134180 chr6 22390427 22390657 + 0 NA Intergenic Intergenic -46629 ENSMUSG00000029672.16 ENSMUSG00000029672 ENSMUST00000168965 Fam3c protein_coding Interval_93214 chr2 71198019 71199244 + 0 NA Intergenic Intergenic -13373 ENSMUSG00000027012.15 ENSMUSG00000027012 ENSMUST00000138613 Dync1i2 protein_coding Interval_98208 chr2 149893632 149894640 + 0 NA intron (ENSMUSG00000074736.10, intron 2 of 2) protein_coding-intron (ENSMUSG00000074736.10, intron 1 of 4) -62494 ENSMUSG00000074737.2 ENSMUSG00000074737 ENSMUST00000099264 C530025M09Rik antisense Interval_118240 chr4 129741500 129742987 + 0 NA promoter-TSS (ENSMUSG00000028790.13) protein_coding-promoter-TSS (ENSMUSG00000028790.13) 19673 ENSMUSG00000080944.1 ENSMUSG00000080944 ENSMUST00000122147 Gm12967 processed_pseudogene Interval_162885 chr9 11416580 11417564 + 0 NA Intergenic Intergenic -110507 ENSMUSG00000110858.1 ENSMUSG00000110858 ENSMUST00000214279 Gm18160 unprocessed_pseudogene Interval_158205 chr8 79765532 79766366 + 0 NA intron (ENSMUSG00000036977.8, intron 1 of 1) protein_coding-intron (ENSMUSG00000036977.8, intron 4 of 4) 7221 ENSMUSG00000110044.1 ENSMUSG00000110044 ENSMUST00000210550 Gm45434 processed_pseudogene Interval_157039 chr8 64712847 64713480 + 0 NA Intergenic Intergenic -2087 ENSMUSG00000110368.1 ENSMUSG00000110368 ENSMUST00000210776 Gm45518 lincRNA Interval_124468 chr5 48430189 48431105 + 0 NA intron (ENSMUSG00000029088.16, intron 2 of 7) protein_coding-intron (ENSMUSG00000029088.16, intron 3 of 8) 58214 ENSMUSG00000029089.8 ENSMUSG00000029089 ENSMUST00000199818 5730480H06Rik protein_coding Interval_154345 chr8 14888053 14890198 + 0 NA promoter-TSS (ENSMUSG00000026317.7) protein_coding-promoter-TSS (ENSMUSG00000026317.7) 121 ENSMUSG00000026317.7 ENSMUSG00000026317 ENSMUST00000128839 Cln8 protein_coding Interval_12186 chr1 190695754 190696103 + 0 NA Intergenic Intergenic 101602 ENSMUSG00000103963.1 ENSMUSG00000103963 ENSMUST00000191893 Gm30932 lincRNA Interval_105197 chr3 83772766 83773781 + 0 NA TTS (ENSMUSG00000097250.1) antisense-TTS (ENSMUSG00000097250.1) 6420 ENSMUSG00000027996.13 ENSMUSG00000027996 ENSMUST00000154794 Sfrp2 protein_coding Interval_83742 chr19 4318763 4319167 + 0 NA TTS (ENSMUSG00000054611.17) protein_coding-TTS (ENSMUSG00000054611.17) 9446 ENSMUSG00000054611.17 ENSMUSG00000054611 ENSMUST00000176495 Kdm2a protein_coding Interval_81435 chr18 60734983 60736060 + 0 NA intron (ENSMUSG00000054008.9, intron 1 of 14) protein_coding-intron (ENSMUSG00000054008.9, intron 1 of 1) -2371 ENSMUSG00000054008.9 ENSMUSG00000054008 ENSMUST00000237070 Ndst1 protein_coding Interval_169647 chr9 99689922 99690420 + 0 NA exon (ENSMUSG00000032473.13, exon 5 of 5) protein_coding-exon (ENSMUSG00000032473.13, exon 5 of 5) -18228 ENSMUSG00000089655.1 ENSMUSG00000089655 ENSMUST00000161981 Gm16004 antisense Interval_98323 chr2 151497850 151499389 + 0 NA intron (ENSMUSG00000027455.16, intron 2 of 7) protein_coding-intron (ENSMUSG00000027455.16, intron 2 of 8) -3708 ENSMUSG00000027455.16 ENSMUSG00000027455 ENSMUST00000139229 Nsfl1c protein_coding Interval_299 chr1 3062472 3063608 + 0 NA Intergenic Intergenic -10213 ENSMUSG00000102693.1 ENSMUSG00000102693 ENSMUST00000193812 4933401J01Rik TEC Interval_29040 chr11 80022940 80023260 + 0 NA intron (ENSMUSG00000017548.15, intron 9 of 14) protein_coding-intron (ENSMUSG00000017548.15, intron 10 of 15) 29994 ENSMUSG00000017548.15 ENSMUSG00000017548 ENSMUST00000144188 Suz12 protein_coding Interval_36656 chr12 51800108 51800361 + 0 NA intron (ENSMUSG00000035247.16, intron 8 of 42) protein_coding-intron (ENSMUSG00000035247.16, intron 8 of 42) -17653 ENSMUSG00000035247.16 ENSMUSG00000035247 ENSMUST00000217804 Hectd1 protein_coding Interval_27015 chr11 62383174 62383451 + 0 NA promoter-TSS (ENSMUSG00000018501.17) protein_coding-promoter-TSS (ENSMUSG00000018501.17) 42 ENSMUSG00000018501.17 ENSMUSG00000018501 ENSMUST00000141447 Ncor1 protein_coding Interval_127846 chr5 108196227 108196864 + 0 NA intron (ENSMUSG00000056531.11, intron 20 of 28) protein_coding-intron (ENSMUSG00000056531.11, intron 20 of 28) 14889 ENSMUSG00000105591.1 ENSMUSG00000105591 ENSMUST00000199594 Gm43083 processed_pseudogene Interval_29806 chr11 86967768 86969824 + 0 NA intron (ENSMUSG00000018427.8, intron 1 of 3) protein_coding-intron (ENSMUSG00000018427.8, intron 2 of 4) 3228 ENSMUSG00000018427.8 ENSMUSG00000018427 ENSMUST00000238921 Ypel2 protein_coding Interval_37279 chr12 64572339 64572686 + 0 NA Intergenic Intergenic -97822 ENSMUSG00000043060.8 ENSMUSG00000043060 ENSMUST00000059833 Fscb protein_coding Interval_53646 chr14 60553627 60555103 + 0 NA intron (ENSMUSG00000101797.1, intron 2 of 2) lincRNA-intron (ENSMUSG00000101797.1, intron 2 of 2) 42537 ENSMUSG00000114408.1 ENSMUSG00000114408 ENSMUST00000224210 Gm47810 processed_pseudogene Interval_106239 chr3 94849224 94849798 + 0 NA intron (ENSMUSG00000038902.14, intron 1 of 6) protein_coding-intron (ENSMUSG00000038902.14, intron 1 of 18) 16534 ENSMUSG00000084058.1 ENSMUSG00000084058 ENSMUST00000121556 Gm15263 processed_pseudogene Interval_23972 chr11 29024457 29025017 + 0 NA Intergenic Intergenic 68013 ENSMUSG00000081695.1 ENSMUSG00000081695 ENSMUST00000121462 Rpsa-ps5 processed_pseudogene Interval_35521 chr12 24287415 24287704 + 0 NA Intergenic Intergenic 20692 ENSMUSG00000114120.1 ENSMUSG00000114120 ENSMUST00000220456 Gm4120 unprocessed_pseudogene Interval_113613 chr4 56989502 56990824 + 0 NA promoter-TSS (ENSMUSG00000045589.7) protein_coding-promoter-TSS (ENSMUSG00000045589.7) -27 ENSMUSG00000045589.7 ENSMUSG00000045589 ENSMUST00000128276 Frrs1l protein_coding Interval_39436 chr12 87401941 87402536 + 0 NA Intergenic Intergenic 7794 ENSMUSG00000113767.1 ENSMUSG00000113767 ENSMUST00000221716 Gm48873 unprocessed_pseudogene Interval_44888 chr13 49383035 49383576 + 0 NA exon (ENSMUSG00000037933.16, exon 7 of 7) protein_coding-exon (ENSMUSG00000037933.16, exon 7 of 7) 216 ENSMUSG00000037933.16 ENSMUSG00000037933 ENSMUST00000220723 Bicd2 protein_coding Interval_51451 chr14 27660575 27660787 + 0 NA intron (ENSMUSG00000040640.11, intron 1 of 15) protein_coding-intron (ENSMUSG00000040640.11, intron 2 of 15) -53696 ENSMUSG00000114653.1 ENSMUSG00000114653 ENSMUST00000224481 Gm18398 processed_pseudogene Interval_147232 chr7 64872156 64873440 + 0 NA exon (ENSMUSG00000070520.4, exon 1 of 1) protein_coding-exon (ENSMUSG00000070520.4, exon 1 of 1) 199 ENSMUSG00000070520.4 ENSMUSG00000070520 ENSMUST00000094331 Nsmce3 protein_coding Interval_18323 chr10 84909177 84911547 + 0 NA Intergenic Intergenic -27031 ENSMUSG00000035620.15 ENSMUSG00000035620 ENSMUST00000214820 Ric8b protein_coding Interval_63277 chr15 100059188 100060678 + 0 NA intron (ENSMUSG00000023026.16, intron 1 of 37) protein_coding-intron (ENSMUSG00000023026.16, intron 1 of 37) 31824 ENSMUSG00000116021.1 ENSMUSG00000116021 ENSMUST00000230449 Gm49474 TEC Interval_112074 chr4 34339709 34340208 + 0 NA Intergenic Intergenic -14085 ENSMUSG00000062554.7 ENSMUSG00000062554 ENSMUST00000122336 Gm12751 processed_pseudogene Interval_77139 chr17 86812046 86812257 + 0 NA intron (ENSMUSG00000024140.10, intron 6 of 15) protein_coding-intron (ENSMUSG00000024140.10, intron 6 of 15) -12182 ENSMUSG00000024140.10 ENSMUSG00000024140 ENSMUST00000234447 Epas1 protein_coding Interval_47900 chr13 94261536 94262282 + 0 NA intron (ENSMUSG00000021687.14, intron 1 of 8) protein_coding-intron (ENSMUSG00000021687.14, intron 1 of 8) -15351 ENSMUSG00000021687.14 ENSMUSG00000021687 ENSMUST00000138255 Scamp1 protein_coding Interval_111272 chr4 16467023 16467210 + 0 NA intron (ENSMUSG00000086072.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000086072.1, intron 1 of 2) 2240 ENSMUSG00000086072.1 ENSMUSG00000086072 ENSMUST00000141571 Gm11861 lincRNA Interval_144974 chr7 29202526 29202851 + 0 NA promoter-TSS (ENSMUSG00000049676.14) protein_coding-promoter-TSS (ENSMUSG00000049676.14) 11294 ENSMUSG00000049676.14 ENSMUSG00000049676 ENSMUST00000167064 Catsperg1 protein_coding Interval_8776 chr1 150992937 150994054 + 0 NA promoter-TSS (ENSMUSG00000066842.18) protein_coding-promoter-TSS (ENSMUSG00000066842.18) -7545 ENSMUSG00000099622.1 ENSMUSG00000099622 ENSMUST00000191173 Gm29188 lincRNA Interval_45321 chr13 54371376 54373133 + 0 NA intron (ENSMUSG00000025867.8, intron 1 of 3) protein_coding-intron (ENSMUSG00000025867.8, intron 1 of 3) 905 ENSMUSG00000025867.8 ENSMUSG00000025867 ENSMUST00000026985 Cplx2 protein_coding Interval_49499 chr13 112462209 112464522 + 0 NA promoter-TSS (ENSMUSG00000021756.12) protein_coding-promoter-TSS (ENSMUSG00000021756.12) -11681 ENSMUSG00000021756.12 ENSMUSG00000021756 ENSMUST00000184949 Il6st protein_coding Interval_159101 chr8 90627387 90627743 + 0 NA Intergenic Intergenic 47393 ENSMUSG00000109672.1 ENSMUSG00000109672 ENSMUST00000211205 Gm45639 lincRNA Interval_163922 chr9 28534891 28535517 + 0 NA intron (ENSMUSG00000062257.13, intron 1 of 2) protein_coding-intron (ENSMUSG00000062257.13, intron 1 of 6) 242456 ENSMUSG00000106021.1 ENSMUSG00000106021 ENSMUST00000199274 Gm44316 miRNA Interval_95093 chr2 103817099 103817869 + 0 NA Intergenic Intergenic 1992 ENSMUSG00000081010.3 ENSMUSG00000081010 ENSMUST00000118421 Gm13880 processed_pseudogene Interval_21452 chr10 128692041 128692386 + 0 NA intron (ENSMUSG00000000711.3, intron 1 of 3) protein_coding-intron (ENSMUSG00000000711.3, intron 1 of 5) 4044 ENSMUSG00000000711.3 ENSMUSG00000000711 ENSMUST00000220593 Rab5b protein_coding Interval_125841 chr5 74925394 74925613 + 0 NA Intergenic Intergenic -23687 ENSMUSG00000072874.4 ENSMUSG00000072874 ENSMUST00000101121 Gm6116 lincRNA Interval_48904 chr13 104606593 104607501 + 0 NA Intergenic Intergenic -77884 ENSMUSG00000084860.1 ENSMUSG00000084860 ENSMUST00000131215 2610204G07Rik antisense Interval_169461 chr9 97639502 97639725 + 0 NA intron (ENSMUSG00000032452.12, intron 2 of 16) protein_coding-intron (ENSMUSG00000032452.12, intron 2 of 17) -199986 ENSMUSG00000077208.1 ENSMUSG00000077208 ENSMUST00000104020 Gm25607 snoRNA Interval_17906 chr10 80741742 80742811 + 0 NA promoter-TSS (ENSMUSG00000020198.8) protein_coding-promoter-TSS (ENSMUSG00000020198.8) -21086 ENSMUSG00000020198.8 ENSMUSG00000020198 ENSMUST00000219356 Ap3d1 protein_coding Interval_161185 chr8 118305186 118305571 + 0 NA intron (ENSMUSG00000031841.19, intron 1 of 7) protein_coding-intron (ENSMUSG00000031841.19, intron 1 of 13) 76813 ENSMUSG00000110662.1 ENSMUSG00000110662 ENSMUST00000213075 Gm45722 processed_pseudogene Interval_119625 chr4 138824323 138825058 + 0 NA intron (ENSMUSG00000041193.15, intron 1 of 5) protein_coding-intron (ENSMUSG00000041193.15, intron 1 of 5) 2786 ENSMUSG00000087894.1 ENSMUSG00000087894 ENSMUST00000157269 Gm25280 snRNA Interval_66227 chr16 32445617 32445981 + 0 NA intron (ENSMUSG00000005615.15, intron 1 of 8) protein_coding-intron (ENSMUSG00000005615.15, intron 1 of 8) 10350 ENSMUSG00000116714.1 ENSMUSG00000116714 ENSMUST00000232596 2210020O09Rik antisense Interval_32234 chr11 106359142 106359782 + 0 NA Intergenic Intergenic -6174 ENSMUSG00000001027.7 ENSMUSG00000001027 ENSMUST00000174877 Scn4a protein_coding Interval_4004 chr1 66159613 66160022 + 0 NA Intergenic Intergenic 96852 ENSMUSG00000083289.1 ENSMUSG00000083289 ENSMUST00000118496 Gm8812 processed_pseudogene Interval_62983 chr15 98488724 98489419 + 0 NA Intergenic Intergenic -3331 ENSMUSG00000054036.6 ENSMUSG00000054036 ENSMUST00000050451 Olfr279 protein_coding Interval_173504 chrX 96162456 96162711 + 0 NA intron (ENSMUSG00000031207.16, intron 8 of 12) protein_coding-intron (ENSMUSG00000031207.16, intron 8 of 12) -11611 ENSMUSG00000088146.1 ENSMUSG00000088146 ENSMUST00000157521 Gm24718 scaRNA Interval_130588 chr5 129061559 129061786 + 0 NA Intergenic Intergenic -35085 ENSMUSG00000044017.16 ENSMUSG00000044017 ENSMUST00000156437 Adgrd1 protein_coding Interval_107561 chr3 108507801 108507999 + 0 NA intron (ENSMUSG00000040412.17, intron 1 of 1) protein_coding-intron (ENSMUSG00000040412.17, intron 1 of 20) 9782 ENSMUSG00000080673.1 ENSMUSG00000080673 ENSMUST00000117023 Gm23336 snRNA Interval_70756 chr17 14183116 14183770 + 0 NA Intergenic Intergenic -20285 ENSMUSG00000117185.1 ENSMUSG00000117185 ENSMUST00000232962 Gm34510 antisense Interval_53248 chr14 55569462 55571178 + 0 NA TTS (ENSMUSG00000022214.15) protein_coding-TTS (ENSMUSG00000022214.15) -5297 ENSMUSG00000022215.6 ENSMUSG00000022215 ENSMUST00000022826 Fitm1 protein_coding Interval_90002 chr2 27247729 27247992 + 0 NA promoter-TSS (ENSMUSG00000009614.16) protein_coding-promoter-TSS (ENSMUSG00000009614.16) -37923 ENSMUSG00000009614.16 ENSMUSG00000009614 ENSMUST00000129975 Sardh protein_coding Interval_150799 chr7 114740226 114741158 + 0 NA Intergenic Intergenic 22017 ENSMUSG00000030666.11 ENSMUSG00000030666 ENSMUST00000182044 Calcb protein_coding Interval_23657 chr11 24157499 24157783 + 0 NA intron (ENSMUSG00000000861.15, intron 1 of 2) protein_coding-intron (ENSMUSG00000000861.15, intron 2 of 4) 15140 ENSMUSG00000085516.1 ENSMUSG00000085516 ENSMUST00000146717 4930538E20Rik antisense Interval_46012 chr13 60096975 60097192 + 0 NA intron (ENSMUSG00000114531.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000114531.1, intron 1 of 2) -12032 ENSMUSG00000114531.1 ENSMUSG00000114531 ENSMUST00000225586 A530065N20Rik lincRNA Interval_18451 chr10 86091830 86093985 + 0 NA intron (ENSMUSG00000059602.14, intron 7 of 8) protein_coding-intron (ENSMUSG00000059602.14, intron 7 of 13) -2952 ENSMUSG00000112493.1 ENSMUSG00000112493 ENSMUST00000218077 4930486F22Rik antisense Interval_144129 chr7 19561671 19563319 + 0 NA exon (ENSMUSG00000051403.9, exon 1 of 13) protein_coding-exon (ENSMUSG00000051403.9, exon 1 of 13) 15100 ENSMUSG00000044709.6 ENSMUSG00000044709 ENSMUST00000151646 Gemin7 protein_coding Interval_109199 chr3 137849551 137850109 + 0 NA Intergenic Intergenic 14353 ENSMUSG00000105676.1 ENSMUSG00000105676 ENSMUST00000198830 Gm43403 antisense Interval_88321 chr2 3746262 3746493 + 0 NA intron (ENSMUSG00000026655.15, intron 2 of 4) protein_coding-intron (ENSMUSG00000026655.15, intron 1 of 3) 8800 ENSMUSG00000085205.1 ENSMUSG00000085205 ENSMUST00000131044 Gm13185 antisense Interval_8600 chr1 143702144 143703459 + 0 NA promoter-TSS (ENSMUSG00000026361.9) protein_coding-promoter-TSS (ENSMUSG00000026361.9) -177 ENSMUSG00000026361.9 ENSMUSG00000026361 ENSMUST00000159794 Cdc73 protein_coding Interval_77716 chr17 94623679 94623895 + 0 NA Intergenic Intergenic 15602 ENSMUSG00000117476.1 ENSMUSG00000117476 ENSMUST00000234959 Gm9416 processed_pseudogene Interval_156993 chr8 63951774 63952500 + 0 NA promoter-TSS (ENSMUSG00000094443.2) protein_coding-promoter-TSS (ENSMUSG00000094443.2) 111 ENSMUSG00000094443.2 ENSMUSG00000094443 ENSMUST00000210915 Sgo2b protein_coding Interval_43420 chr13 30550978 30551189 + 0 NA Intergenic Intergenic -5721 ENSMUSG00000038462.3 ENSMUSG00000038462 ENSMUST00000042834 Uqcrfs1 protein_coding Interval_136705 chr6 58187535 58188010 + 0 NA Intergenic Intergenic -4549 ENSMUSG00000107521.1 ENSMUSG00000107521 ENSMUST00000203809 Gm43994 lincRNA Interval_28098 chr11 72795296 72796814 + 0 NA promoter-TSS (ENSMUSG00000055670.14) protein_coding-promoter-TSS (ENSMUSG00000055670.14) -199 ENSMUSG00000055670.14 ENSMUSG00000055670 ENSMUST00000125122 Zzef1 protein_coding Interval_102682 chr3 29872609 29873094 + 0 NA intron (ENSMUSG00000102574.1, intron 1 of 3) lincRNA-intron (ENSMUSG00000102574.1, intron 1 of 3) -18163 ENSMUSG00000102590.1 ENSMUSG00000102590 ENSMUST00000193549 Mannr lincRNA Interval_11025 chr1 178496369 178497292 + 0 NA Intergenic Intergenic -32295 ENSMUSG00000026494.12 ENSMUSG00000026494 ENSMUST00000160789 Kif26b protein_coding Interval_108965 chr3 133644619 133644946 + 0 NA Intergenic Intergenic -10024 ENSMUSG00000102530.1 ENSMUSG00000102530 ENSMUST00000193574 Gm37228 TEC Interval_4186 chr1 71468165 71468378 + 0 NA Intergenic Intergenic 25543 ENSMUSG00000101617.1 ENSMUSG00000101617 ENSMUST00000186254 Gm6947 processed_pseudogene Interval_155905 chr8 40925791 40927848 + 0 NA intron (ENSMUSG00000031595.9, intron 1 of 1) protein_coding-intron (ENSMUSG00000031595.9, intron 1 of 5) 607 ENSMUSG00000031595.9 ENSMUSG00000031595 ENSMUST00000034004 Pdgfrl protein_coding Interval_75 GL456212.1 149843 153219 + 0 NA NA NA NA NA Interval_96537 chr2 125487545 125488108 + 0 NA intron (ENSMUSG00000027204.13, intron 1 of 9) protein_coding-intron (ENSMUSG00000027204.13, intron 2 of 65) -17263 ENSMUSG00000053615.1 ENSMUSG00000053615 ENSMUST00000066157 Gm9913 antisense Interval_114324 chr4 72763656 72764054 + 0 NA Intergenic Intergenic 88777 ENSMUSG00000059343.4 ENSMUSG00000059343 ENSMUST00000078617 Aldoart1 protein_coding Interval_29212 chr11 81582995 81583368 + 0 NA intron (ENSMUSG00000020704.13, intron 1 of 9) protein_coding-intron (ENSMUSG00000020704.13, intron 1 of 9) -4180 ENSMUSG00000087534.1 ENSMUSG00000087534 ENSMUST00000156193 Gm11418 antisense Interval_163841 chr9 27082154 27082361 + 0 NA intron (ENSMUSG00000035024.16, intron 1 of 11) protein_coding-intron (ENSMUSG00000035024.16, intron 25 of 35) -16294 ENSMUSG00000111390.1 ENSMUSG00000111390 ENSMUST00000217654 Gm48796 antisense Interval_170655 chr9 109922495 109923451 + 0 NA Intergenic Intergenic 1777 ENSMUSG00000105191.1 ENSMUSG00000105191 ENSMUST00000197587 Gm4644 processed_pseudogene Interval_65483 chr16 22637176 22638027 + 0 NA intron (ENSMUSG00000022861.17, intron 1 of 5) protein_coding-intron (ENSMUSG00000022861.17, intron 1 of 23) 19588 ENSMUSG00000022861.17 ENSMUSG00000022861 ENSMUST00000231249 Dgkg protein_coding Interval_97791 chr2 144107634 144108383 + 0 NA intron (ENSMUSG00000074758.10, intron 1 of 2) lincRNA-intron (ENSMUSG00000074758.10, intron 2 of 3) 35365 ENSMUSG00000082480.1 ENSMUSG00000082480 ENSMUST00000118911 Gm11687 processed_pseudogene Interval_37721 chr12 71412362 71413055 + 0 NA intron (ENSMUSG00000113441.1, intron 2 of 5) lincRNA-intron (ENSMUSG00000113441.1, intron 2 of 5) -28500 ENSMUSG00000100668.1 ENSMUSG00000100668 ENSMUST00000190526 1700083H02Rik lincRNA Interval_24058 chr11 29861980 29862900 + 0 NA intron (ENSMUSG00000044072.14, intron 7 of 41) protein_coding-intron (ENSMUSG00000044072.14, intron 7 of 41) 12979 ENSMUSG00000088135.1 ENSMUSG00000088135 ENSMUST00000157510 Gm22588 snoRNA Interval_10403 chr1 170462163 170462788 + 0 NA intron (ENSMUSG00000038473.14, intron 2 of 7) protein_coding-intron (ENSMUSG00000038473.14, intron 2 of 3) -141695 ENSMUSG00000038473.14 ENSMUSG00000038473 ENSMUST00000159665 Nos1ap protein_coding Interval_172488 chrX 21244970 21246138 + 0 NA Intergenic Intergenic -38240 ENSMUSG00000087358.8 ENSMUSG00000087358 ENSMUST00000155208 4930453H23Rik lincRNA Interval_10320 chr1 168954339 168954661 + 0 NA Intergenic Intergenic 64589 ENSMUSG00000098829.1 ENSMUSG00000098829 ENSMUST00000184979 Mir6354 miRNA Interval_157549 chr8 71371226 71371977 + 0 NA promoter-TSS (ENSMUSG00000002396.8) protein_coding-promoter-TSS (ENSMUSG00000002396.8) -872 ENSMUSG00000002396.8 ENSMUSG00000002396 ENSMUST00000126049 Ocel1 protein_coding Interval_43523 chr13 32680518 32681382 + 0 NA intron (ENSMUSG00000118652.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000118652.1, intron 1 of 2) 66934 ENSMUSG00000118652.1 ENSMUSG00000118652 ENSMUST00000239419 AL645799.1 lincRNA Interval_52731 chr14 49153740 49154276 + 0 NA Intergenic Intergenic -18218 ENSMUSG00000036282.15 ENSMUSG00000036282 ENSMUST00000134984 Naa30 protein_coding Interval_144055 chr7 19212466 19212919 + 0 NA intron (ENSMUSG00000044317.7, intron 1 of 1) protein_coding-intron (ENSMUSG00000044317.7, intron 1 of 1) 154 ENSMUSG00000044317.7 ENSMUSG00000044317 ENSMUST00000060225 Gpr4 protein_coding Interval_63331 chr15 100381794 100383278 + 0 NA intron (ENSMUSG00000093550.7, intron 3 of 3) protein_coding-intron (ENSMUSG00000093789.3, intron 3 of 3) 17991 ENSMUSG00000093550.7 ENSMUSG00000093550 ENSMUST00000177211 Higd1c protein_coding Interval_131137 chr5 135363486 135364252 + 0 NA exon (ENSMUSG00000053388.10, exon 3 of 6) protein_coding-exon (ENSMUSG00000053388.10, exon 3 of 6) -6708 ENSMUSG00000000916.15 ENSMUSG00000000916 ENSMUST00000124453 Nsun5 protein_coding Interval_50203 chr14 9657915 9659112 + 0 NA intron (ENSMUSG00000060579.13, intron 4 of 5) protein_coding-intron (ENSMUSG00000060579.13, intron 8 of 9) -188958 ENSMUSG00000114298.1 ENSMUSG00000114298 ENSMUST00000224617 Gm48371 lincRNA Interval_91189 chr2 35751033 35751409 + 0 NA TTS (ENSMUSG00000026885.13) protein_coding-TTS (ENSMUSG00000026885.13) 14658 ENSMUSG00000107106.1 ENSMUSG00000107106 ENSMUST00000202120 Gm43760 TEC Interval_162432 chr8 128685143 128686584 + 0 NA promoter-TSS (ENSMUSG00000025809.15) protein_coding-promoter-TSS (ENSMUSG00000025809.15) 31550 ENSMUSG00000110654.1 ENSMUSG00000110654 ENSMUST00000212623 Gm45746 TEC Interval_149114 chr7 93795028 93795266 + 0 NA Intergenic Intergenic 52707 ENSMUSG00000118493.1 ENSMUSG00000118493 ENSMUST00000238896 AC107736.1 processed_pseudogene Interval_11924 chr1 187187130 187187789 + 0 NA intron (ENSMUSG00000026611.17, intron 3 of 10) protein_coding-intron (ENSMUSG00000026611.17, intron 3 of 9) -28079 ENSMUSG00000039210.16 ENSMUSG00000039210 ENSMUST00000160570 Gpatch2 protein_coding Interval_8118 chr1 135812766 135813247 + 0 NA Intergenic Intergenic -16989 ENSMUSG00000041782.14 ENSMUSG00000041782 ENSMUST00000185756 Lad1 protein_coding Interval_35459 chr12 22707821 22708822 + 0 NA Intergenic Intergenic -9434 ENSMUSG00000113413.1 ENSMUSG00000113413 ENSMUST00000221121 Gm21941 unprocessed_pseudogene Interval_71944 chr17 27134969 27135497 + 0 NA Intergenic Intergenic -1610 ENSMUSG00000024208.16 ENSMUSG00000024208 ENSMUST00000119227 Uqcc2 protein_coding Interval_134033 chr6 17876801 17877149 + 0 NA intron (ENSMUSG00000029534.17, intron 6 of 7) protein_coding-intron (ENSMUSG00000029534.17, intron 8 of 14) -28732 ENSMUSG00000098570.1 ENSMUSG00000098570 ENSMUST00000184157 Gm27444 misc_RNA Interval_165964 chr9 55024054 55024665 + 0 NA exon (ENSMUSG00000032303.8, exon 2 of 6) protein_coding-exon (ENSMUSG00000032303.8, exon 2 of 6) 2200 ENSMUSG00000032303.8 ENSMUSG00000032303 ENSMUST00000214204 Chrna3 protein_coding Interval_33698 chr11 117968713 117970139 + 0 NA promoter-TSS (ENSMUSG00000053113.3) protein_coding-promoter-TSS (ENSMUSG00000053113.3) 25 ENSMUSG00000053113.3 ENSMUSG00000053113 ENSMUST00000132295 Socs3 protein_coding Interval_164316 chr9 35281508 35282835 + 0 NA promoter-TSS (ENSMUSG00000066771.2) processed_pseudogene-promoter-TSS (ENSMUSG00000066771.2) -336 ENSMUSG00000066771.2 ENSMUSG00000066771 ENSMUST00000091097 Gm5614 processed_pseudogene Interval_89452 chr2 20748494 20748834 + 0 NA intron (ENSMUSG00000036617.17, intron 2 of 7) protein_coding-intron (ENSMUSG00000036617.17, intron 7 of 18) -35430 ENSMUSG00000086418.1 ENSMUSG00000086418 ENSMUST00000137186 Gm13362 antisense Interval_20665 chr10 120123861 120125569 + 0 NA Intergenic Intergenic -11850 ENSMUSG00000020228.11 ENSMUSG00000020228 ENSMUST00000154501 Helb protein_coding Interval_54564 chr14 70702846 70703376 + 0 NA intron (ENSMUSG00000022100.14, intron 4 of 27) protein_coding-intron (ENSMUSG00000022100.14, intron 4 of 27) 4924 ENSMUSG00000022100.14 ENSMUSG00000022100 ENSMUST00000227550 Xpo7 protein_coding Interval_151015 chr7 117729018 117729304 + 0 NA Intergenic Intergenic -47633 ENSMUSG00000088116.1 ENSMUSG00000088116 ENSMUST00000157491 Gm24063 miRNA Interval_162778 chr9 9019936 9020145 + 0 NA intron (ENSMUSG00000050730.17, intron 11 of 15) protein_coding-intron (ENSMUSG00000050730.17, intron 11 of 22) 48249 ENSMUSG00000078117.2 ENSMUSG00000078117 ENSMUST00000104915 Gm16485 TEC Interval_33093 chr11 114360754 114361746 + 0 NA Intergenic Intergenic 4121 ENSMUSG00000081548.1 ENSMUSG00000081548 ENSMUST00000122121 Gm11692 processed_pseudogene Interval_169714 chr9 100599874 100600144 + 0 NA intron (ENSMUSG00000037286.15, intron 1 of 3) protein_coding-intron (ENSMUSG00000037286.15, intron 1 of 3) 4979 ENSMUSG00000111164.1 ENSMUSG00000111164 ENSMUST00000215061 Gm47803 processed_pseudogene Interval_5965 chr1 93583249 93584971 + 0 NA intron (ENSMUSG00000034066.13, intron 13 of 26) protein_coding-intron (ENSMUSG00000034066.13, intron 13 of 26) -51083 ENSMUSG00000100927.1 ENSMUSG00000100927 ENSMUST00000190971 Gm28536 antisense Interval_31656 chr11 102053590 102054392 + 0 NA intron (ENSMUSG00000017309.11, intron 7 of 7) protein_coding-intron (ENSMUSG00000017309.11, intron 6 of 6) 12482 ENSMUSG00000017309.11 ENSMUSG00000017309 ENSMUST00000107164 Cd300lg protein_coding Interval_90778 chr2 32566351 32567194 + 0 NA intron (ENSMUSG00000039157.12, intron 9 of 9) protein_coding-intron (ENSMUSG00000039157.12, intron 10 of 10) -5275 ENSMUSG00000026810.12 ENSMUSG00000026810 ENSMUST00000150419 Dpm2 protein_coding Interval_33687 chr11 117922785 117923633 + 0 NA TTS (ENSMUSG00000082562.1) processed_pseudogene-TTS (ENSMUSG00000082562.1) 1304 ENSMUSG00000082562.1 ENSMUSG00000082562 ENSMUST00000121028 Gm11726 processed_pseudogene Interval_59102 chr15 43801225 43801983 + 0 NA Intergenic Intergenic -6857 ENSMUSG00000115407.1 ENSMUSG00000115407 ENSMUST00000226778 Gm2140 processed_pseudogene Interval_44327 chr13 43684944 43685278 + 0 NA intron (ENSMUSG00000114121.1, intron 3 of 6) lincRNA-intron (ENSMUSG00000114121.1, intron 3 of 6) 1991 ENSMUSG00000114121.1 ENSMUSG00000114121 ENSMUST00000222349 Gm47728 lincRNA Interval_78842 chr18 20932541 20933562 + 0 NA Intergenic Intergenic -28421 ENSMUSG00000033107.6 ENSMUSG00000033107 ENSMUST00000234316 Rnf125 protein_coding Interval_36139 chr12 36235707 36237184 + 0 NA intron (ENSMUSG00000020545.14, intron 3 of 7) protein_coding-intron (ENSMUSG00000020545.14, intron 3 of 8) -18227 ENSMUSG00000020545.14 ENSMUSG00000020545 ENSMUST00000222145 Lrrc72 protein_coding Interval_85647 chr19 29324551 29326012 + 0 NA promoter-TSS (ENSMUSG00000050957.4) protein_coding-promoter-TSS (ENSMUSG00000050957.4) 75 ENSMUSG00000050957.4 ENSMUSG00000050957 ENSMUST00000052380 Insl6 protein_coding Interval_24817 chr11 39661353 39661548 + 0 NA Intergenic Intergenic 66262 ENSMUSG00000083806.1 ENSMUSG00000083806 ENSMUST00000117479 Gm12131 processed_pseudogene Interval_65813 chr16 29208960 29210499 + 0 NA promoter-TSS (ENSMUSG00000022525.13) protein_coding-promoter-TSS (ENSMUSG00000022525.13) -379 ENSMUSG00000022525.13 ENSMUSG00000022525 ENSMUST00000161294 Plaat1 protein_coding Interval_97012 chr2 130502768 130502984 + 0 NA intron (ENSMUSG00000027303.18, intron 1 of 11) protein_coding-intron (ENSMUSG00000027303.18, intron 1 of 20) -21119 ENSMUSG00000115955.1 ENSMUSG00000115955 ENSMUST00000229108 9530056E24Rik TEC Interval_110528 chr4 3610242 3610446 + 0 NA intron (ENSMUSG00000028233.6, intron 1 of 1) protein_coding-intron (ENSMUSG00000028233.6, intron 12 of 12) 4707 ENSMUSG00000028233.6 ENSMUSG00000028233 ENSMUST00000146315 Tgs1 protein_coding Interval_32147 chr11 105618280 105619048 + 0 NA intron (ENSMUSG00000053580.16, intron 1 of 4) protein_coding-intron (ENSMUSG00000053580.16, intron 1 of 25) 21039 ENSMUSG00000080681.1 ENSMUSG00000080681 ENSMUST00000117031 Gm23990 miRNA Interval_87819 chr19 56270245 56270770 + 0 NA Intergenic Intergenic 7138 ENSMUSG00000077223.1 ENSMUSG00000077223 ENSMUST00000104035 Gm22271 snoRNA Interval_151041 chr7 118115600 118118386 + 0 NA promoter-TSS (ENSMUSG00000008683.16) protein_coding-promoter-TSS (ENSMUSG00000008683.16) -1737 ENSMUSG00000008683.16 ENSMUSG00000008683 ENSMUST00000128482 Rps15a protein_coding Interval_153535 chr8 3251870 3252149 + 0 NA intron (ENSMUSG00000005534.10, intron 2 of 2) protein_coding-intron (ENSMUSG00000005534.10, intron 2 of 20) -7695 ENSMUSG00000086065.1 ENSMUSG00000086065 ENSMUST00000128662 Gm16180 antisense Interval_115015 chr4 88477145 88477355 + 0 NA Intergenic Intergenic -38322 ENSMUSG00000028497.12 ENSMUSG00000028497 ENSMUST00000030221 Hacd4 protein_coding Interval_113785 chr4 58579867 58580421 + 0 NA Intergenic Intergenic -9620 ENSMUSG00000081186.1 ENSMUSG00000081186 ENSMUST00000121244 Gm12578 processed_pseudogene Interval_160377 chr8 108819344 108821063 + 0 NA intron (ENSMUSG00000038872.10, intron 9 of 15) protein_coding-intron (ENSMUSG00000038872.10, intron 3 of 9) -47359 ENSMUSG00000102989.1 ENSMUSG00000102989 ENSMUST00000195769 Gm38318 TEC Interval_22844 chr11 16579186 16579409 + 0 NA Intergenic Intergenic 56769 ENSMUSG00000101316.1 ENSMUSG00000101316 ENSMUST00000118481 Gm12663 processed_pseudogene Interval_41269 chr12 112299803 112300050 + 0 NA Intergenic Intergenic 50141 ENSMUSG00000103080.1 ENSMUSG00000103080 ENSMUST00000194990 Gm38123 TEC Interval_104438 chr3 65656984 65659790 + 0 NA promoter-TSS (ENSMUSG00000098944.1) miRNA-promoter-TSS (ENSMUSG00000098944.1) -901 ENSMUSG00000098944.1 ENSMUSG00000098944 ENSMUST00000185035 Mir8120 miRNA Interval_23168 chr11 20288769 20289236 + 0 NA Intergenic Intergenic 1381 ENSMUSG00000083792.1 ENSMUSG00000083792 ENSMUST00000121298 Rpl12-ps2 processed_pseudogene Interval_150844 chr7 115543341 115544480 + 0 NA intron (ENSMUSG00000051910.13, intron 5 of 6) protein_coding-intron (ENSMUSG00000051910.13, intron 12 of 16) 302241 ENSMUSG00000051910.13 ENSMUSG00000051910 ENSMUST00000206912 Sox6 protein_coding Interval_169646 chr9 99681883 99682867 + 0 NA Intergenic Intergenic -26024 ENSMUSG00000089655.1 ENSMUSG00000089655 ENSMUST00000161981 Gm16004 antisense Interval_87661 chr19 54067844 54068928 + 0 NA Intergenic Intergenic -16173 ENSMUSG00000117921.1 ENSMUSG00000117921 ENSMUST00000236398 Gm50186 lincRNA Interval_10982 chr1 177751128 177751339 + 0 NA intron (ENSMUSG00000015962.5, intron 4 of 5) protein_coding-intron (ENSMUSG00000015962.5, intron 4 of 5) 21419 ENSMUSG00000015962.5 ENSMUSG00000015962 ENSMUST00000016106 1700016C15Rik protein_coding Interval_172742 chrX 48196890 48198319 + 0 NA intron (ENSMUSG00000036985.12, intron 1 of 2) protein_coding-intron (ENSMUSG00000036985.12, intron 2 of 9) 11054 ENSMUSG00000036985.12 ENSMUSG00000036985 ENSMUST00000149416 Zdhhc9 protein_coding Interval_79739 chr18 34815053 34815938 + 0 NA intron (ENSMUSG00000038773.11, intron 10 of 22) protein_coding-intron (ENSMUSG00000038773.11, intron 11 of 23) 18600 ENSMUSG00000038773.11 ENSMUSG00000038773 ENSMUST00000223567 Kdm3b protein_coding Interval_95851 chr2 117263897 117264504 + 0 NA intron (ENSMUSG00000027349.5, intron 6 of 7) protein_coding-intron (ENSMUSG00000027349.5, intron 6 of 7) 5418 ENSMUSG00000027349.5 ENSMUSG00000027349 ENSMUST00000143612 Fam98b protein_coding Interval_123637 chr5 34137844 34138495 + 0 NA intron (ENSMUSG00000045102.12, intron 3 of 24) protein_coding-intron (ENSMUSG00000045102.12, intron 2 of 24) 19429 ENSMUSG00000106902.1 ENSMUSG00000106902 ENSMUST00000202325 4930557J02Rik antisense Interval_105851 chr3 89703630 89703951 + 0 NA Intergenic Intergenic -11232 ENSMUSG00000027951.16 ENSMUSG00000027951 ENSMUST00000131030 Adar protein_coding Interval_167602 chr9 70975107 70975354 + 0 NA Intergenic Intergenic -23004 ENSMUSG00000032207.10 ENSMUSG00000032207 ENSMUST00000215814 Lipc protein_coding Interval_71561 chr17 24565947 24567560 + 0 NA intron (ENSMUSG00000032855.6, intron 6 of 45) protein_coding-intron (ENSMUSG00000032855.6, intron 6 of 45) -20866 ENSMUSG00000032855.6 ENSMUSG00000032855 ENSMUST00000228581 Pkd1 protein_coding Interval_10175 chr1 166390720 166390982 + 0 NA intron (ENSMUSG00000026563.13, intron 6 of 7) protein_coding-intron (ENSMUSG00000026563.13, intron 6 of 7) -10358 ENSMUSG00000103400.2 ENSMUSG00000103400 ENSMUST00000195518 Gm15853 antisense Interval_11666 chr1 184265823 184266512 + 0 NA Intergenic Intergenic -92162 ENSMUSG00000102682.5 ENSMUSG00000102682 ENSMUST00000194453 Gm37223 lincRNA Interval_15845 chr10 58358035 58358328 + 0 NA intron (ENSMUSG00000019920.18, intron 1 of 9) protein_coding-intron (ENSMUSG00000019920.18, intron 1 of 9) -8577 ENSMUSG00000070214.1 ENSMUSG00000070214 ENSMUST00000093703 Gm23058 snRNA Interval_172546 chrX 36513714 36513953 + 0 NA Intergenic Intergenic -22003 ENSMUSG00000091556.8 ENSMUSG00000091556 ENSMUST00000167210 Gm14569 protein_coding Interval_134552 chr6 29507099 29508269 + 0 NA promoter-TSS (ENSMUSG00000097137.1) antisense-promoter-TSS (ENSMUSG00000097137.1) -41 ENSMUSG00000097137.1 ENSMUSG00000097137 ENSMUST00000181540 Gm26627 antisense Interval_89127 chr2 16953822 16954362 + 0 NA Intergenic Intergenic 5926 ENSMUSG00000076950.1 ENSMUSG00000076950 ENSMUST00000103762 Gm24933 miRNA Interval_42864 chr13 20587354 20588164 + 0 NA intron (ENSMUSG00000041112.17, intron 4 of 4) protein_coding-intron (ENSMUSG00000041112.17, intron 19 of 21) -57998 ENSMUSG00000113130.1 ENSMUSG00000113130 ENSMUST00000222716 Gm47721 processed_pseudogene Interval_157093 chr8 65093977 65094267 + 0 NA promoter-TSS (ENSMUSG00000092842.1) miRNA-promoter-TSS (ENSMUSG00000092842.1) -79 ENSMUSG00000109620.1 ENSMUSG00000109620 ENSMUST00000211412 Gm48810 processed_pseudogene Interval_120289 chr4 145213976 145215183 + 0 NA exon (ENSMUSG00000028599.10, exon 10 of 10) protein_coding-exon (ENSMUSG00000028599.10, exon 10 of 10) 32291 ENSMUSG00000028599.10 ENSMUSG00000028599 ENSMUST00000143055 Tnfrsf1b protein_coding Interval_173542 chrX 99057726 99059378 + 0 NA intron (ENSMUSG00000031216.13, intron 1 of 2) protein_coding-intron (ENSMUSG00000031216.13, intron 1 of 13) 23850 ENSMUSG00000083310.2 ENSMUSG00000083310 ENSMUST00000119692 Gm5760 processed_pseudogene Interval_51709 chr14 31546781 31547374 + 0 NA intron (ENSMUSG00000057606.14, intron 6 of 16) protein_coding-intron (ENSMUSG00000057606.14, intron 6 of 16) -9819 ENSMUSG00000089241.1 ENSMUSG00000089241 ENSMUST00000158616 Gm24057 misc_RNA Interval_44885 chr13 49362085 49363025 + 0 NA intron (ENSMUSG00000037933.16, intron 1 of 7) protein_coding-intron (ENSMUSG00000037933.16, intron 1 of 6) -20534 ENSMUSG00000037933.16 ENSMUSG00000037933 ENSMUST00000220723 Bicd2 protein_coding Interval_30431 chr11 94321126 94322587 + 0 NA promoter-TSS (ENSMUSG00000020863.15) protein_coding-promoter-TSS (ENSMUSG00000020863.15) -11597 ENSMUSG00000020864.13 ENSMUSG00000020864 ENSMUST00000124087 Ankrd40 protein_coding Interval_108839 chr3 132399579 132399796 + 0 NA Intergenic Intergenic 45861 ENSMUSG00000106280.1 ENSMUSG00000106280 ENSMUST00000198028 Gm42880 lincRNA Interval_75361 chr17 66123195 66124423 + 0 NA intron (ENSMUSG00000035842.10, intron 1 of 4) protein_coding-intron (ENSMUSG00000035842.10, intron 1 of 26) 8124 ENSMUSG00000024101.15 ENSMUSG00000024101 ENSMUST00000233311 Washc1 protein_coding Interval_123956 chr5 36861195 36861529 + 0 NA Intergenic Intergenic -7301 ENSMUSG00000029120.10 ENSMUSG00000029120 ENSMUST00000138124 Ppp2r2c protein_coding Interval_73120 chr17 34922731 34923349 + 0 NA intron (ENSMUSG00000007034.15, intron 10 of 19) protein_coding-intron (ENSMUSG00000007034.15, intron 11 of 20) 8574 ENSMUSG00000007034.15 ENSMUSG00000007034 ENSMUST00000169230 Slc44a4 protein_coding Interval_136449 chr6 54579034 54579277 + 0 NA TTS (ENSMUSG00000038074.16) protein_coding-TTS (ENSMUSG00000038074.16) 13993 ENSMUSG00000038074.16 ENSMUSG00000038074 ENSMUST00000154907 Fkbp14 protein_coding Interval_63462 chr15 101223964 101225153 + 0 NA promoter-TSS (ENSMUSG00000097915.2) antisense-promoter-TSS (ENSMUSG00000097915.2) 370 ENSMUSG00000000531.5 ENSMUSG00000000531 ENSMUST00000000543 Grasp protein_coding Interval_51894 chr14 33432615 33434106 + 0 NA TTS (ENSMUSG00000115745.1) processed_pseudogene-TTS (ENSMUSG00000115745.1) 1227 ENSMUSG00000115745.1 ENSMUSG00000115745 ENSMUST00000228189 Gm46448 processed_pseudogene Interval_39126 chr12 85288129 85289205 + 0 NA promoter-TSS (ENSMUSG00000045064.5) protein_coding-promoter-TSS (ENSMUSG00000045064.5) -229 ENSMUSG00000008822.15 ENSMUSG00000008822 ENSMUST00000065913 Acyp1 protein_coding Interval_24369 chr11 32709438 32710653 + 0 NA intron (ENSMUSG00000020271.17, intron 2 of 12) protein_coding-intron (ENSMUSG00000020271.17, intron 3 of 13) 65594 ENSMUSG00000098054.1 ENSMUSG00000098054 ENSMUST00000182196 Gm8192 processed_pseudogene Interval_108003 chr3 119634744 119635484 + 0 NA Intergenic Intergenic 3760 ENSMUSG00000087806.1 ENSMUSG00000087806 ENSMUST00000157181 Gm23432 snoRNA Interval_116402 chr4 111503300 111503595 + 0 NA intron (ENSMUSG00000061298.14, intron 2 of 6) protein_coding-intron (ENSMUSG00000061298.14, intron 6 of 12) -63248 ENSMUSG00000061298.14 ENSMUSG00000061298 ENSMUST00000142460 Agbl4 protein_coding Interval_152923 chr7 139766016 139767525 + 0 NA Intergenic Intergenic -7944 ENSMUSG00000109905.1 ENSMUSG00000109905 ENSMUST00000211599 Gm7380 processed_pseudogene Interval_47701 chr13 91426323 91427798 + 0 NA Intergenic Intergenic -34110 ENSMUSG00000003992.15 ENSMUSG00000003992 ENSMUST00000137658 Ssbp2 protein_coding Interval_96436 chr2 122737710 122739177 + 0 NA promoter-TSS (ENSMUSG00000005804.14) protein_coding-promoter-TSS (ENSMUSG00000005804.14) -76 ENSMUSG00000005804.14 ENSMUSG00000005804 ENSMUST00000129690 Bloc1s6 protein_coding Interval_51150 chr14 24185335 24185589 + 0 NA intron (ENSMUSG00000021782.14, intron 5 of 31) protein_coding-intron (ENSMUSG00000021782.14, intron 4 of 30) -14476 ENSMUSG00000114880.1 ENSMUSG00000114880 ENSMUST00000224920 Gm49098 TEC Interval_172006 chr9 123446856 123447346 + 0 NA intron (ENSMUSG00000035202.8, intron 14 of 20) protein_coding-intron (ENSMUSG00000035202.8, intron 14 of 20) -33509 ENSMUSG00000025239.3 ENSMUSG00000025239 ENSMUST00000214309 Limd1 protein_coding Interval_116388 chr4 111277743 111277958 + 0 NA intron (ENSMUSG00000061298.14, intron 1 of 6) protein_coding-intron (ENSMUSG00000061298.14, intron 5 of 12) -12268 ENSMUSG00000081068.1 ENSMUSG00000081068 ENSMUST00000121030 Gm12804 processed_pseudogene Interval_105939 chr3 90190692 90191306 + 0 NA exon (ENSMUSG00000027939.11, exon 31 of 40) protein_coding-exon (ENSMUSG00000027939.11, exon 31 of 40) -7683 ENSMUSG00000084527.1 ENSMUSG00000084527 ENSMUST00000122578 Gm24185 snRNA Interval_146512 chr7 46525543 46526277 + 0 NA intron (ENSMUSG00000030839.12, intron 9 of 11) protein_coding-intron (ENSMUSG00000030839.12, intron 9 of 10) -13130 ENSMUSG00000110316.1 ENSMUSG00000110316 ENSMUST00000211086 Gm45311 sense_intronic Interval_118707 chr4 133297804 133298162 + 0 NA intron (ENSMUSG00000037622.14, intron 12 of 15) protein_coding-intron (ENSMUSG00000037622.14, intron 12 of 15) -16671 ENSMUSG00000083241.1 ENSMUSG00000083241 ENSMUST00000120792 Gm13259 processed_pseudogene Interval_102665 chr3 29134818 29136783 + 0 NA intron (ENSMUSG00000063600.14, intron 1 of 11) protein_coding-intron (ENSMUSG00000063600.14, intron 1 of 12) -39038 ENSMUSG00000103992.1 ENSMUSG00000103992 ENSMUST00000192669 Gm38029 TEC Interval_62875 chr15 97648211 97648410 + 0 NA Intergenic Intergenic 32043 ENSMUSG00000022466.6 ENSMUSG00000022466 ENSMUST00000229008 Rpap3 protein_coding Interval_52135 chr14 36978027 36978384 + 0 NA Intergenic Intergenic 46329 ENSMUSG00000114739.1 ENSMUSG00000114739 ENSMUST00000223806 Gm47885 processed_pseudogene Interval_129708 chr5 121889520 121891240 + 0 NA intron (ENSMUSG00000042589.18, intron 3 of 20) protein_coding-intron (ENSMUSG00000042589.18, intron 5 of 22) -24317 ENSMUSG00000042589.18 ENSMUSG00000042589 ENSMUST00000125267 Cux2 protein_coding Interval_66123 chr16 31779826 31781270 + 0 NA intron (ENSMUSG00000022770.17, intron 6 of 25) protein_coding-intron (ENSMUSG00000022770.17, intron 5 of 24) 19582 ENSMUSG00000116626.1 ENSMUSG00000116626 ENSMUST00000232512 Gm49705 TEC Interval_24990 chr11 42635734 42635989 + 0 NA Intergenic Intergenic 214511 ENSMUSG00000007653.12 ENSMUSG00000007653 ENSMUST00000192403 Gabrb2 protein_coding Interval_93099 chr2 70147044 70147399 + 0 NA intron (ENSMUSG00000042064.13, intron 7 of 33) protein_coding-intron (ENSMUSG00000042064.13, intron 8 of 34) 64147 ENSMUSG00000042064.13 ENSMUSG00000042064 ENSMUST00000112241 Myo3b protein_coding Interval_13816 chr10 22858309 22858586 + 0 NA Intergenic Intergenic -38288 ENSMUSG00000045680.8 ENSMUSG00000045680 ENSMUST00000218002 Tcf21 protein_coding Interval_60815 chr15 76924679 76926239 + 0 NA promoter-TSS (ENSMUSG00000054967.7) protein_coding-promoter-TSS (ENSMUSG00000054967.7) -68 ENSMUSG00000054967.7 ENSMUSG00000054967 ENSMUST00000230677 Zfp647 protein_coding Interval_104726 chr3 69798006 69798787 + 0 NA Intergenic Intergenic 61526 ENSMUSG00000043461.13 ENSMUSG00000043461 ENSMUST00000171529 Sptssb protein_coding Interval_29313 chr11 82870461 82871614 + 0 NA promoter-TSS (ENSMUSG00000020696.18) protein_coding-promoter-TSS (ENSMUSG00000020696.18) 19552 ENSMUSG00000018841.17 ENSMUSG00000018841 ENSMUST00000100718 Rad51d protein_coding Interval_78014 chr18 6703719 6704382 + 0 NA Intergenic Intergenic -12733 ENSMUSG00000117620.1 ENSMUSG00000117620 ENSMUST00000234799 Gm50077 processed_pseudogene Interval_35617 chr12 25747269 25747711 + 0 NA Intergenic Intergenic 59689 ENSMUSG00000089441.1 ENSMUSG00000089441 ENSMUST00000158816 Gm22527 rRNA Interval_165585 chr9 49922214 49922503 + 0 NA Intergenic Intergenic -32520 ENSMUSG00000111682.1 ENSMUSG00000111682 ENSMUST00000215094 Gm47543 lincRNA Interval_91013 chr2 34249131 34250258 + 0 NA intron (ENSMUSG00000038718.15, intron 1 of 5) protein_coding-intron (ENSMUSG00000038718.15, intron 2 of 8) -38077 ENSMUSG00000084908.2 ENSMUSG00000084908 ENSMUST00000131588 C79798 antisense Interval_143732 chr7 15967248 15967639 + 0 NA promoter-TSS (ENSMUSG00000074364.6) protein_coding-promoter-TSS (ENSMUSG00000074364.6) 32 ENSMUSG00000074364.6 ENSMUSG00000074364 ENSMUST00000144956 Ehd2 protein_coding Interval_172848 chrX 52109815 52110168 + 0 NA intron (ENSMUSG00000031119.4, intron 1 of 8) protein_coding-intron (ENSMUSG00000031119.4, intron 1 of 8) 55261 ENSMUSG00000031119.4 ENSMUSG00000031119 ENSMUST00000033450 Gpc4 protein_coding Interval_33060 chr11 114047116 114048311 + 0 NA intron (ENSMUSG00000041592.16, intron 1 of 11) protein_coding-intron (ENSMUSG00000041592.16, intron 1 of 44) -43693 ENSMUSG00000086760.1 ENSMUSG00000086760 ENSMUST00000129365 1700025D23Rik lincRNA Interval_109904 chr3 150588470 150588715 + 0 NA promoter-TSS (ENSMUSG00000105190.1) lincRNA-promoter-TSS (ENSMUSG00000105190.1) -226 ENSMUSG00000105190.1 ENSMUSG00000105190 ENSMUST00000198573 Gm43470 lincRNA Interval_5040 chr1 84581760 84582335 + 0 NA TTS (ENSMUSG00000036766.12) protein_coding-TTS (ENSMUSG00000036766.12) 41794 ENSMUSG00000036766.12 ENSMUSG00000036766 ENSMUST00000191546 Dner protein_coding Interval_34297 chr12 3208380 3210690 + 0 NA Intergenic Intergenic -7377 ENSMUSG00000112279.1 ENSMUSG00000112279 ENSMUST00000218269 Gm18774 unprocessed_pseudogene Interval_110740 chr4 7777624 7778554 + 0 NA Intergenic Intergenic -14589 ENSMUSG00000082024.1 ENSMUSG00000082024 ENSMUST00000119446 Gm11794 processed_pseudogene Interval_134241 chr6 23459197 23459565 + 0 NA intron (ENSMUSG00000017978.18, intron 9 of 29) protein_coding-intron (ENSMUSG00000017978.18, intron 8 of 29) -60365 ENSMUSG00000098877.1 ENSMUSG00000098877 ENSMUST00000185172 Gm27959 rRNA Interval_61867 chr15 84758460 84758933 + 0 NA exon (ENSMUSG00000078954.9, exon 7 of 7) protein_coding-exon (ENSMUSG00000078954.9, exon 7 of 7) 28753 ENSMUSG00000016624.15 ENSMUSG00000016624 ENSMUST00000160389 Phf21b protein_coding Interval_162319 chr8 127051454 127051996 + 0 NA Intergenic Intergenic 4813 ENSMUSG00000088710.1 ENSMUSG00000088710 ENSMUST00000158085 Gm22730 snRNA Interval_157433 chr8 70329440 70332697 + 0 NA TTS (ENSMUSG00000058301.8) protein_coding-TTS (ENSMUSG00000058301.8) 1251 ENSMUSG00000109523.1 ENSMUSG00000109523 ENSMUST00000207684 Gdf1 protein_coding Interval_143591 chr7 13008894 13010909 + 0 NA promoter-TSS (ENSMUSG00000049600.8) protein_coding-promoter-TSS (ENSMUSG00000049600.8) -101 ENSMUSG00000049600.8 ENSMUSG00000049600 ENSMUST00000210108 Zbtb45 protein_coding Interval_125591 chr5 72269601 72270143 + 0 NA intron (ENSMUSG00000046808.17, intron 4 of 11) polymorphic_pseudogene-intron (ENSMUSG00000046808.17, intron 15 of 22) 35590 ENSMUSG00000089195.1 ENSMUSG00000089195 ENSMUST00000158570 Gm25768 snRNA Interval_4577 chr1 75218038 75219932 + 0 NA promoter-TSS (ENSMUSG00000026202.13) protein_coding-promoter-TSS (ENSMUSG00000026202.13) -97 ENSMUSG00000026202.13 ENSMUSG00000026202 ENSMUST00000189131 Tuba4a protein_coding Interval_20763 chr10 120840377 120840929 + 0 NA intron (ENSMUSG00000051236.13, intron 2 of 5) protein_coding-intron (ENSMUSG00000051236.13, intron 4 of 6) 9815 ENSMUSG00000051236.13 ENSMUSG00000051236 ENSMUST00000130950 Msrb3 protein_coding Interval_63717 chr15 103010746 103011350 + 0 NA TTS (ENSMUSG00000001661.5) protein_coding-TTS (ENSMUSG00000001661.5) -3862 ENSMUSG00000076010.1 ENSMUSG00000076010 ENSMUST00000102056 Mir615 miRNA Interval_66311 chr16 33061423 33063363 + 0 NA promoter-TSS (ENSMUSG00000022802.2) protein_coding-promoter-TSS (ENSMUSG00000022802.2) -5717 ENSMUSG00000077844.1 ENSMUSG00000077844 ENSMUST00000101027 Gm22231 miRNA Interval_58568 chr15 36192185 36193085 + 0 NA TTS (ENSMUSG00000037617.12) protein_coding-TTS (ENSMUSG00000037617.12) -12625 ENSMUSG00000088201.1 ENSMUSG00000088201 ENSMUST00000157576 Gm23754 snRNA Interval_56631 chr14 120965434 120965828 + 0 NA Intergenic Intergenic 49784 ENSMUSG00000030662.10 ENSMUSG00000030662 ENSMUST00000228277 Ipo5 protein_coding Interval_139813 chr6 109012007 109013060 + 0 NA Intergenic Intergenic -113152 ENSMUSG00000107501.1 ENSMUSG00000107501 ENSMUST00000203862 Gm29781 processed_pseudogene Interval_49213 chr13 109514088 109514274 + 0 NA intron (ENSMUSG00000021699.17, intron 1 of 14) protein_coding-intron (ENSMUSG00000021699.17, intron 1 of 14) 189437 ENSMUSG00000076946.2 ENSMUSG00000076946 ENSMUST00000103758 Mir582 miRNA Interval_124322 chr5 43921806 43922137 + 0 NA Intergenic Intergenic 5218 ENSMUSG00000093859.2 ENSMUSG00000093859 ENSMUST00000177915 Gm7882 processed_pseudogene Interval_22373 chr11 9240265 9241141 + 0 NA intron (ENSMUSG00000004668.14, intron 3 of 5) protein_coding-intron (ENSMUSG00000004668.14, intron 3 of 61) 47252 ENSMUSG00000004668.14 ENSMUSG00000004668 ENSMUST00000151522 Abca13 protein_coding Interval_149813 chr7 101778176 101778501 + 0 NA intron (ENSMUSG00000001829.17, intron 9 of 16) protein_coding-intron (ENSMUSG00000001829.17, intron 9 of 15) -12198 ENSMUSG00000110360.1 ENSMUSG00000110360 ENSMUST00000210465 Gm45380 processed_pseudogene Interval_41452 chr12 114277842 114278080 + 0 NA Intergenic Intergenic -10055 ENSMUSG00000102497.1 ENSMUSG00000102497 ENSMUST00000103480 Ighv13-1 IG_V_pseudogene Interval_6007 chr1 93861259 93861551 + 0 NA promoter-TSS (ENSMUSG00000094651.2) protein_coding-promoter-TSS (ENSMUSG00000094651.2) 99 ENSMUSG00000094651.2 ENSMUSG00000094651 ENSMUST00000187896 Gal3st2 protein_coding Interval_101171 chr2 178774283 178774672 + 0 NA Intergenic Intergenic 246656 ENSMUSG00000082215.3 ENSMUSG00000082215 ENSMUST00000118225 Gm14314 processed_pseudogene Interval_6249 chr1 104656831 104657163 + 0 NA Intergenic Intergenic -23639 ENSMUSG00000099801.1 ENSMUSG00000099801 ENSMUST00000191059 Gm29011 processed_pseudogene Interval_35958 chr12 32841810 32842343 + 0 NA intron (ENSMUSG00000020572.8, intron 7 of 10) protein_coding-intron (ENSMUSG00000020572.8, intron 7 of 10) 22531 ENSMUSG00000020572.8 ENSMUSG00000020572 ENSMUST00000218491 Nampt protein_coding Interval_171293 chr9 116134664 116135023 + 0 NA intron (ENSMUSG00000032440.13, intron 1 of 6) protein_coding-intron (ENSMUSG00000032440.13, intron 1 of 6) 40422 ENSMUSG00000032440.13 ENSMUSG00000032440 ENSMUST00000035014 Tgfbr2 protein_coding Interval_118115 chr4 129035282 129035741 + 0 NA Intergenic Intergenic 22472 ENSMUSG00000085085.2 ENSMUSG00000085085 ENSMUST00000149472 1700086P04Rik lincRNA Interval_46636 chr13 67813439 67814715 + 0 NA exon (ENSMUSG00000030446.17, exon 1 of 1) protein_coding-exon (ENSMUSG00000030446.17, exon 1 of 1) 337 ENSMUSG00000030446.17 ENSMUSG00000030446 ENSMUST00000012725 Zfp273 protein_coding Interval_12596 chr10 3798292 3798798 + 0 NA intron (ENSMUSG00000040624.18, intron 1 of 7) protein_coding-intron (ENSMUSG00000040624.18, intron 1 of 16) -36334 ENSMUSG00000040624.18 ENSMUSG00000040624 ENSMUST00000141367 Plekhg1 protein_coding Interval_29776 chr11 86723449 86723631 + 0 NA TTS (ENSMUSG00000047126.17) protein_coding-TTS (ENSMUSG00000047126.17) 2943 ENSMUSG00000047126.17 ENSMUSG00000047126 ENSMUST00000133501 Cltc protein_coding Interval_50683 chr14 18186164 18186389 + 0 NA Intergenic Intergenic -2764 ENSMUSG00000114678.1 ENSMUSG00000114678 ENSMUST00000224869 Gm48481 processed_pseudogene Interval_29555 chr11 84888262 84888454 + 0 NA intron (ENSMUSG00000020527.14, intron 5 of 21) protein_coding-intron (ENSMUSG00000020527.14, intron 5 of 5) -4729 ENSMUSG00000092644.1 ENSMUSG00000092644 ENSMUST00000174903 Gm23564 miRNA Interval_81615 chr18 62147882 62148452 + 0 NA Intergenic Intergenic 5549 ENSMUSG00000118370.1 ENSMUSG00000118370 ENSMUST00000236502 Gm41750 lincRNA Interval_161822 chr8 123020931 123021773 + 0 NA intron (ENSMUSG00000035569.17, intron 1 of 2) protein_coding-intron (ENSMUSG00000035569.17, intron 1 of 12) 20925 ENSMUSG00000035569.17 ENSMUSG00000035569 ENSMUST00000212937 Ankrd11 protein_coding Interval_67314 chr16 45963293 45963528 + 0 NA exon (ENSMUSG00000087141.1, exon 4 of 4) protein_coding-exon (ENSMUSG00000087141.1, exon 4 of 4) 17804 ENSMUSG00000085826.1 ENSMUSG00000085826 ENSMUST00000134359 Gm15638 antisense Interval_66338 chr16 33234003 33234274 + 0 NA intron (ENSMUSG00000022807.9, intron 10 of 12) protein_coding-intron (ENSMUSG00000022807.9, intron 10 of 12) -17304 ENSMUSG00000022808.5 ENSMUSG00000022808 ENSMUST00000231242 Snx4 protein_coding Interval_30346 chr11 93762878 93763670 + 0 NA Intergenic Intergenic 68192 ENSMUSG00000080872.1 ENSMUSG00000080872 ENSMUST00000122414 Gm11506 processed_pseudogene Interval_45907 chr13 59058855 59060518 + 0 NA intron (ENSMUSG00000114437.1, intron 1 of 1) protein_coding-intron (ENSMUSG00000055254.15, intron 15 of 17) 18610 ENSMUSG00000114896.1 ENSMUSG00000114896 ENSMUST00000224384 Gm34245 TEC Interval_35300 chr12 20008532 20011565 + 0 NA Intergenic Intergenic 7271 ENSMUSG00000113287.1 ENSMUSG00000113287 ENSMUST00000221342 Gm40853 unprocessed_pseudogene Interval_34629 chr12 8187678 8189411 + 0 NA intron (ENSMUSG00000112694.1, intron 1 of 3) antisense-intron (ENSMUSG00000112694.1, intron 1 of 3) -19605 ENSMUSG00000037669.15 ENSMUSG00000037669 ENSMUST00000219532 Ldah protein_coding Interval_108998 chr3 134329692 134329903 + 0 NA Intergenic Intergenic -27495 ENSMUSG00000106628.1 ENSMUSG00000106628 ENSMUST00000200155 Gm43558 TEC Interval_13745 chr10 21745566 21747374 + 0 NA intron (ENSMUSG00000099749.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000099749.1, intron 1 of 1) 2603 ENSMUSG00000099749.1 ENSMUSG00000099749 ENSMUST00000189792 Gm29323 lincRNA Interval_18025 chr10 81416330 81417247 + 0 NA promoter-TSS (ENSMUSG00000105379.1) miRNA-promoter-TSS (ENSMUSG00000105379.1) -491 ENSMUSG00000105379.1 ENSMUSG00000105379 ENSMUST00000199973 Mir1191b miRNA Interval_138598 chr6 90231785 90233669 + 0 NA promoter-TSS (ENSMUSG00000092247.2) transcribed_processed_pseudogene-promoter-TSS (ENSMUSG00000092247.2) 90 ENSMUSG00000092247.2 ENSMUSG00000092247 ENSMUST00000173657 Gm20426 transcribed_processed_pseudogene Interval_128702 chr5 114812342 114812675 + 0 NA TTS (ENSMUSG00000072694.8) protein_coding-TTS (ENSMUSG00000072694.8) 10960 ENSMUSG00000072694.8 ENSMUSG00000072694 ENSMUST00000100850 1500011B03Rik protein_coding Interval_82843 chr18 77406740 77407540 + 0 NA intron (ENSMUSG00000032818.16, intron 31 of 39) protein_coding-intron (ENSMUSG00000032818.16, intron 31 of 38) 60008 ENSMUSG00000025427.15 ENSMUSG00000025427 ENSMUST00000182146 Rnf165 protein_coding Interval_113856 chr4 59374092 59374946 + 0 NA intron (ENSMUSG00000038578.15, intron 8 of 16) protein_coding-intron (ENSMUSG00000038578.15, intron 8 of 16) -5653 ENSMUSG00000083979.1 ENSMUSG00000083979 ENSMUST00000117967 Gm12527 processed_pseudogene Interval_36547 chr12 49348560 49348866 + 0 NA Intergenic Intergenic 24770 ENSMUSG00000112651.1 ENSMUSG00000112651 ENSMUST00000219860 Gm18623 processed_pseudogene Interval_166454 chr9 59602964 59604106 + 0 NA promoter-TSS (ENSMUSG00000032297.11) protein_coding-promoter-TSS (ENSMUSG00000032297.11) 877 ENSMUSG00000032297.11 ENSMUSG00000032297 ENSMUST00000129728 Celf6 protein_coding Interval_99180 chr2 157829966 157830300 + 0 NA intron (ENSMUSG00000027649.15, intron 8 of 8) protein_coding-intron (ENSMUSG00000027649.15, intron 10 of 15) 40269 ENSMUSG00000027649.15 ENSMUSG00000027649 ENSMUST00000156300 Ctnnbl1 protein_coding Interval_173501 chrX 96121032 96121230 + 0 NA intron (ENSMUSG00000031207.16, intron 1 of 3) protein_coding-intron (ENSMUSG00000031207.16, intron 1 of 12) 25074 ENSMUSG00000031207.16 ENSMUSG00000031207 ENSMUST00000135027 Msn protein_coding Interval_150243 chr7 108933941 108934986 + 0 NA promoter-TSS (ENSMUSG00000031029.6) protein_coding-promoter-TSS (ENSMUSG00000031029.6) -3932 ENSMUSG00000031029.6 ENSMUSG00000031029 ENSMUST00000147369 Eif3f protein_coding Interval_79470 chr18 32138871 32140290 + 0 NA promoter-TSS (ENSMUSG00000024386.9) protein_coding-promoter-TSS (ENSMUSG00000024386.9) -1150 ENSMUSG00000117606.1 ENSMUSG00000117606 ENSMUST00000234291 Gm5969 processed_pseudogene Interval_6326 chr1 105908135 105908842 + 0 NA Intergenic Intergenic -17476 ENSMUSG00000102690.1 ENSMUSG00000102690 ENSMUST00000194221 Gm37779 TEC Interval_114795 chr4 85318833 85319298 + 0 NA intron (ENSMUSG00000028488.15, intron 1 of 7) protein_coding-intron (ENSMUSG00000028488.15, intron 1 of 8) -57276 ENSMUSG00000028488.15 ENSMUSG00000028488 ENSMUST00000133109 Sh3gl2 protein_coding Interval_45621 chr13 56303929 56304911 + 0 NA Intergenic Intergenic -8115 ENSMUSG00000021508.11 ENSMUSG00000021508 ENSMUST00000021970 Cxcl14 protein_coding Interval_119200 chr4 136159661 136160577 + 0 NA Intergenic Intergenic 16255 ENSMUSG00000007872.3 ENSMUSG00000007872 ENSMUST00000133946 Id3 protein_coding Interval_84119 chr19 7318204 7318913 + 0 NA intron (ENSMUSG00000024969.15, intron 1 of 7) protein_coding-intron (ENSMUSG00000024969.15, intron 1 of 17) 20900 ENSMUSG00000091558.1 ENSMUSG00000091558 ENSMUST00000166590 Gm17227 antisense Interval_48033 chr13 95426274 95426659 + 0 NA Intergenic Intergenic -4790 ENSMUSG00000114122.1 ENSMUSG00000114122 ENSMUST00000223434 Gm48712 processed_pseudogene Interval_114367 chr4 74339577 74340300 + 0 NA intron (ENSMUSG00000028397.13, intron 12 of 21) protein_coding-intron (ENSMUSG00000028397.13, intron 12 of 21) 77129 ENSMUSG00000028397.13 ENSMUSG00000028397 ENSMUST00000150439 Kdm4c protein_coding Interval_41845 chr13 3304586 3305127 + 0 NA Intergenic Intergenic 5969 ENSMUSG00000114003.1 ENSMUSG00000114003 ENSMUST00000221154 Gm9616 processed_pseudogene Interval_167124 chr9 65519813 65520596 + 0 NA promoter-TSS (ENSMUSG00000066510.5) protein_coding-promoter-TSS (ENSMUSG00000066510.5) -11 ENSMUSG00000066510.5 ENSMUSG00000066510 ENSMUST00000217646 Ankdd1a protein_coding Interval_29403 chr11 83784497 83785737 + 0 NA Intergenic Intergenic 10693 ENSMUSG00000000976.13 ENSMUSG00000000976 ENSMUST00000136572 Heatr6 protein_coding Interval_152408 chr7 132816209 132816485 + 0 NA intron (ENSMUSG00000030849.18, intron 2 of 6) protein_coding-intron (ENSMUSG00000030849.18, intron 2 of 6) -13597 ENSMUSG00000030956.15 ENSMUSG00000030956 ENSMUST00000148303 Fam53b protein_coding Interval_146376 chr7 45588927 45589572 + 0 NA intron (ENSMUSG00000030826.19, intron 11 of 11) protein_coding-intron (ENSMUSG00000030826.19, intron 10 of 10) -7891 ENSMUSG00000109632.1 ENSMUSG00000109632 ENSMUST00000209936 Gm31479 lincRNA Interval_12373 chr1 192735770 192737229 + 0 NA TTS (ENSMUSG00000037375.16) protein_coding-TTS (ENSMUSG00000037375.16) -9072 ENSMUSG00000094131.1 ENSMUSG00000094131 ENSMUST00000082947 Gm22265 snRNA Interval_162939 chr9 13588345 13588696 + 0 NA intron (ENSMUSG00000031925.17, intron 1 of 4) protein_coding-intron (ENSMUSG00000031925.17, intron 1 of 4) -32706 ENSMUSG00000093092.1 ENSMUSG00000093092 ENSMUST00000175351 Gm22643 miRNA Interval_12493 chr1 194354672 194354858 + 0 NA Intergenic Intergenic -132006 ENSMUSG00000103692.1 ENSMUSG00000103692 ENSMUST00000193395 4930503O07Rik lincRNA Interval_167573 chr9 70541611 70543375 + 0 NA promoter-TSS (ENSMUSG00000032212.10) protein_coding-promoter-TSS (ENSMUSG00000032212.10) -387 ENSMUSG00000032212.10 ENSMUSG00000032212 ENSMUST00000216881 Sltm protein_coding Interval_19644 chr10 106913196 106913507 + 0 NA intron (ENSMUSG00000053825.15, intron 6 of 10) protein_coding-intron (ENSMUSG00000053825.15, intron 27 of 31) 20345 ENSMUSG00000053825.15 ENSMUSG00000053825 ENSMUST00000219024 Ppfia2 protein_coding Interval_117785 chr4 126219237 126219786 + 0 NA Intergenic Intergenic 14037 ENSMUSG00000028849.17 ENSMUSG00000028849 ENSMUST00000131579 Map7d1 protein_coding Interval_107761 chr3 113599083 113599283 + 0 NA intron (ENSMUSG00000074264.12, intron 1 of 3) protein_coding-intron (ENSMUSG00000074264.12, intron 1 of 3) 7516 ENSMUSG00000074264.12 ENSMUSG00000074264 ENSMUST00000174147 Amy1 protein_coding Interval_112726 chr4 44434747 44435198 + 0 NA Intergenic Intergenic -22377 ENSMUSG00000077587.1 ENSMUSG00000077587 ENSMUST00000104399 Gm24376 snoRNA Interval_135100 chr6 35353217 35354423 + 0 NA Intergenic Intergenic 22974 ENSMUSG00000107341.1 ENSMUSG00000107341 ENSMUST00000201560 1700065J11Rik lincRNA Interval_102520 chr3 27448530 27448774 + 0 NA intron (ENSMUSG00000039286.12, intron 23 of 26) protein_coding-intron (ENSMUSG00000039286.12, intron 22 of 25) 77301 ENSMUSG00000051136.1 ENSMUSG00000051136 ENSMUST00000057186 Ghsr protein_coding Interval_6174 chr1 99590654 99591044 + 0 NA Intergenic Intergenic 49392 ENSMUSG00000099453.1 ENSMUSG00000099453 ENSMUST00000191164 Gm18248 processed_pseudogene Interval_50358 chr14 12029999 12031199 + 0 NA intron (ENSMUSG00000021745.14, intron 4 of 29) protein_coding-intron (ENSMUSG00000021745.14, intron 4 of 29) -49391 ENSMUSG00000085883.2 ENSMUSG00000085883 ENSMUST00000151564 Gm3848 antisense Interval_103354 chr3 40219399 40220267 + 0 NA Intergenic Intergenic 289941 ENSMUSG00000037884.6 ENSMUSG00000037884 ENSMUST00000202778 1700017G19Rik lincRNA Interval_9776 chr1 162061978 162062323 + 0 NA intron (ENSMUSG00000040265.16, intron 16 of 20) protein_coding-intron (ENSMUSG00000040265.16, intron 16 of 19) 26318 ENSMUSG00000102994.1 ENSMUSG00000102994 ENSMUST00000193239 Gm37767 TEC Interval_123422 chr5 32422068 32422673 + 0 NA Intergenic Intergenic 2367 ENSMUSG00000107211.1 ENSMUSG00000107211 ENSMUST00000202263 Gm5864 processed_pseudogene Interval_43760 chr13 36149282 36149792 + 0 NA intron (ENSMUSG00000021420.13, intron 2 of 7) protein_coding-intron (ENSMUSG00000021420.13, intron 1 of 6) -32011 ENSMUSG00000046573.7 ENSMUSG00000046573 ENSMUST00000053265 Lyrm4 protein_coding Interval_77284 chr17 87784280 87784709 + 0 NA intron (ENSMUSG00000050138.8, intron 1 of 1) protein_coding-intron (ENSMUSG00000050138.8, intron 1 of 1) 13500 ENSMUSG00000050138.8 ENSMUSG00000050138 ENSMUST00000055221 Kcnk12 protein_coding Interval_85899 chr19 32845538 32845860 + 0 NA Intergenic Intergenic 34474 ENSMUSG00000013663.7 ENSMUSG00000013663 ENSMUST00000154806 Pten protein_coding Interval_151770 chr7 126544147 126544569 + 0 NA Intergenic Intergenic 19622 ENSMUSG00000084453.1 ENSMUSG00000084453 ENSMUST00000122504 Gm24596 snRNA Interval_106653 chr3 98146212 98147206 + 0 NA exon (ENSMUSG00000027878.11, exon 34 of 34) protein_coding-exon (ENSMUSG00000027878.11, exon 34 of 34) -13921 ENSMUSG00000043468.4 ENSMUSG00000043468 ENSMUST00000050342 Adam30 protein_coding Interval_66684 chr16 36097759 36098224 + 0 NA Intergenic Intergenic 8787 ENSMUSG00000075229.11 ENSMUSG00000075229 ENSMUST00000231239 Ccdc58 protein_coding Interval_151331 chr7 121121576 121121808 + 0 NA intron (ENSMUSG00000034990.15, intron 2 of 17) protein_coding-intron (ENSMUSG00000034990.15, intron 12 of 28) 40042 ENSMUSG00000034990.15 ENSMUSG00000034990 ENSMUST00000163275 Otoa protein_coding Interval_92153 chr2 54413292 54413746 + 0 NA Intergenic Intergenic -22972 ENSMUSG00000060988.12 ENSMUSG00000060988 ENSMUST00000068595 Galnt13 protein_coding Interval_75906 chr17 72911095 72911470 + 0 NA Intergenic Intergenic -9906 ENSMUSG00000024063.13 ENSMUSG00000024063 ENSMUST00000148556 Lbh protein_coding Interval_42485 chr13 14030819 14031173 + 0 NA intron (ENSMUSG00000039233.12, intron 1 of 16) protein_coding-intron (ENSMUSG00000039233.12, intron 1 of 16) -10396 ENSMUSG00000113819.1 ENSMUSG00000113819 ENSMUST00000220914 Gm48017 processed_pseudogene Interval_81415 chr18 60627374 60627738 + 0 NA intron (ENSMUSG00000043079.17, intron 3 of 3) protein_coding-intron (ENSMUSG00000043079.17, intron 1 of 2) -3294 ENSMUSG00000043079.17 ENSMUSG00000043079 ENSMUST00000139236 Synpo protein_coding Interval_62489 chr15 93438648 93439381 + 0 NA intron (ENSMUSG00000036167.16, intron 1 of 2) protein_coding-intron (ENSMUSG00000036167.16, intron 4 of 9) 39806 ENSMUSG00000036167.16 ENSMUSG00000036167 ENSMUST00000229721 Pphln1 protein_coding Interval_42150 chr13 9191141 9191722 + 0 NA Intergenic Intergenic -32106 ENSMUSG00000113936.1 ENSMUSG00000113936 ENSMUST00000222096 Gm8784 processed_pseudogene Interval_108663 chr3 129901149 129902113 + 0 NA exon (ENSMUSG00000027997.9, exon 1 of 1) protein_coding-exon (ENSMUSG00000027997.9, exon 1 of 1) 130 ENSMUSG00000027997.9 ENSMUSG00000027997 ENSMUST00000152622 Casp6 protein_coding Interval_66081 chr16 31468876 31469154 + 0 NA promoter-TSS (ENSMUSG00000116572.1) lincRNA-promoter-TSS (ENSMUSG00000116572.1) -911 ENSMUSG00000116572.1 ENSMUSG00000116572 ENSMUST00000232608 Gm49695 lincRNA Interval_123714 chr5 34750248 34750476 + 0 NA intron (ENSMUSG00000052783.16, intron 3 of 5) protein_coding-intron (ENSMUSG00000052783.16, intron 13 of 15) -17390 ENSMUSG00000080556.1 ENSMUSG00000080556 ENSMUST00000116906 Mir467g miRNA Interval_116661 chr4 116439836 116440103 + 0 NA intron (ENSMUSG00000003810.13, intron 1 of 29) protein_coding-intron (ENSMUSG00000003810.13, intron 1 of 28) -8819 ENSMUSG00000082592.1 ENSMUSG00000082592 ENSMUST00000121683 Gm12950 processed_pseudogene Interval_7683 chr1 133033380 133034416 + 0 NA Intergenic Intergenic 8097 ENSMUSG00000100228.1 ENSMUSG00000100228 ENSMUST00000186115 Gm29257 processed_pseudogene Interval_77171 chr17 87054904 87055255 + 0 NA Intergenic Intergenic -1254 ENSMUSG00000087736.1 ENSMUSG00000087736 ENSMUST00000157111 Gm24648 snoRNA Interval_5276 chr1 87184583 87187333 + 0 NA exon (ENSMUSG00000036480.9, exon 7 of 13) protein_coding-exon (ENSMUSG00000036480.9, exon 7 of 13) 2645 ENSMUSG00000036480.9 ENSMUSG00000036480 ENSMUST00000044533 Prss56 protein_coding Interval_104126 chr3 58851042 58851671 + 0 NA intron (ENSMUSG00000043850.15, intron 1 of 1) protein_coding-intron (ENSMUSG00000043850.15, intron 2 of 2) 14441 ENSMUSG00000043850.15 ENSMUSG00000043850 ENSMUST00000161419 Clrn1 protein_coding Interval_43811 chr13 36789129 36789466 + 0 NA Intergenic Intergenic -47069 ENSMUSG00000114483.1 ENSMUSG00000114483 ENSMUST00000225846 Gm49144 antisense Interval_131924 chr5 140815101 140815786 + 0 NA intron (ENSMUSG00000000149.10, intron 1 of 2) protein_coding-intron (ENSMUSG00000000149.10, intron 1 of 3) 14714 ENSMUSG00000000149.10 ENSMUSG00000000149 ENSMUST00000198447 Gna12 protein_coding Interval_47739 chr13 92130980 92132219 + 0 NA promoter-TSS (ENSMUSG00000021708.17) protein_coding-promoter-TSS (ENSMUSG00000021708.17) 57 ENSMUSG00000021708.17 ENSMUSG00000021708 ENSMUST00000146492 Rasgrf2 protein_coding Interval_92278 chr2 57960791 57961166 + 0 NA Intergenic Intergenic 25039 ENSMUSG00000110205.1 ENSMUSG00000110205 ENSMUST00000209502 Gm33594 lincRNA Interval_86074 chr19 36266405 36268173 + 0 NA Intergenic Intergenic -2852 ENSMUSG00000117990.1 ENSMUSG00000117990 ENSMUST00000236548 Gm32027 processed_transcript Interval_8923 chr1 152261042 152261653 + 0 NA Intergenic Intergenic 31181 ENSMUSG00000103744.1 ENSMUSG00000103744 ENSMUST00000194334 Gm38238 TEC Interval_151467 chr7 122815209 122816032 + 0 NA Intergenic Intergenic -22343 ENSMUSG00000108529.1 ENSMUSG00000108529 ENSMUST00000205860 Gm29759 processed_pseudogene Interval_39235 chr12 86102805 86104534 + 0 NA intron (ENSMUSG00000007867.9, intron 1 of 5) protein_coding-intron (ENSMUSG00000007867.9, intron 2 of 7) 21061 ENSMUSG00000007867.9 ENSMUSG00000007867 ENSMUST00000220711 Ift43 protein_coding Interval_56932 chr14 123600837 123602127 + 0 NA intron (ENSMUSG00000000197.8, intron 1 of 29) protein_coding-intron (ENSMUSG00000000197.8, intron 1 of 43) 25662 ENSMUSG00000000197.8 ENSMUSG00000000197 ENSMUST00000228766 Nalcn protein_coding Interval_16804 chr10 68253575 68255075 + 0 NA intron (ENSMUSG00000019947.10, intron 2 of 9) protein_coding-intron (ENSMUSG00000019947.10, intron 2 of 10) 24415 ENSMUSG00000019947.10 ENSMUSG00000019947 ENSMUST00000218425 Arid5b protein_coding Interval_71035 chr17 17325842 17327610 + 0 NA Intergenic Intergenic 19414 ENSMUSG00000043801.7 ENSMUSG00000043801 ENSMUST00000052440 Oaz1-ps processed_pseudogene Interval_81595 chr18 61960687 61960908 + 0 NA intron (ENSMUSG00000045629.8, intron 1 of 16) protein_coding-intron (ENSMUSG00000045629.8, intron 1 of 16) -17162 ENSMUSG00000045629.8 ENSMUSG00000045629 ENSMUST00000236759 Sh3tc2 protein_coding Interval_124809 chr5 54588781 54589833 + 0 NA Intergenic Intergenic 19402 ENSMUSG00000106529.1 ENSMUSG00000106529 ENSMUST00000196759 Gm18451 processed_pseudogene Interval_8763 chr1 150632429 150632954 + 0 NA intron (ENSMUSG00000066842.18, intron 71 of 105) protein_coding-intron (ENSMUSG00000066842.18, intron 71 of 106) 7392 ENSMUSG00000093650.2 ENSMUSG00000093650 ENSMUST00000177268 Gm20631 antisense Interval_168758 chr9 86731262 86731594 + 0 NA Intergenic Intergenic -12221 ENSMUSG00000033491.13 ENSMUSG00000033491 ENSMUST00000036426 Prss35 protein_coding Interval_100777 chr2 172477738 172478417 + 0 NA Intergenic Intergenic 5557 ENSMUSG00000027505.2 ENSMUSG00000027505 ENSMUST00000029007 Fam209 protein_coding Interval_120058 chr4 141575032 141577115 + 0 NA TTS (ENSMUSG00000006219.12) protein_coding-TTS (ENSMUSG00000006219.12) 29884 ENSMUSG00000048406.5 ENSMUSG00000048406 ENSMUST00000049927 B330016D10Rik pseudogene Interval_11505 chr1 182316959 182317911 + 0 NA intron (ENSMUSG00000047539.9, intron 3 of 3) protein_coding-intron (ENSMUSG00000047539.9, intron 4 of 4) 24136 ENSMUSG00000047539.9 ENSMUSG00000047539 ENSMUST00000194213 Fbxo28 protein_coding Interval_76976 chr17 85327564 85327770 + 0 NA intron (ENSMUSG00000071037.6, intron 3 of 10) protein_coding-intron (ENSMUSG00000071037.6, intron 3 of 10) -170966 ENSMUSG00000097803.1 ENSMUSG00000097803 ENSMUST00000181130 Rpl31-ps16 processed_pseudogene Interval_73686 chr17 42815371 42815639 + 0 NA TTS (ENSMUSG00000061665.7) protein_coding-TTS (ENSMUSG00000061665.7) 15525 ENSMUSG00000061665.7 ENSMUSG00000061665 ENSMUST00000233626 Cd2ap protein_coding Interval_60268 chr15 71727668 71728596 + 0 NA promoter-TSS (ENSMUSG00000036800.8) protein_coding-promoter-TSS (ENSMUSG00000036800.8) -294 ENSMUSG00000036800.8 ENSMUSG00000036800 ENSMUST00000229189 Fam135b protein_coding Interval_58495 chr15 35200515 35200789 + 0 NA promoter-TSS (ENSMUSG00000115345.1) lincRNA-promoter-TSS (ENSMUSG00000115345.1) -152 ENSMUSG00000115345.1 ENSMUSG00000115345 ENSMUST00000228112 Gm33497 lincRNA Interval_9604 chr1 160147747 160147934 + 0 NA promoter-TSS (ENSMUSG00000026725.17) protein_coding-promoter-TSS (ENSMUSG00000026725.17) 48 ENSMUSG00000026725.17 ENSMUSG00000026725 ENSMUST00000131919 Tnn protein_coding Interval_102328 chr3 21950395 21951139 + 0 NA Intergenic Intergenic 47701 ENSMUSG00000106321.1 ENSMUSG00000106321 ENSMUST00000196313 Gm43674 lincRNA Interval_71284 chr17 21909112 21910514 + 0 NA promoter-TSS (ENSMUSG00000078546.8) protein_coding-promoter-TSS (ENSMUSG00000078546.8) 113 ENSMUSG00000078546.8 ENSMUSG00000078546 ENSMUST00000185948 Zfp995 protein_coding Interval_144270 chr7 24144441 24144696 + 0 NA Intergenic Intergenic 10340 ENSMUSG00000047603.9 ENSMUSG00000047603 ENSMUST00000056549 Zfp235 protein_coding Interval_132818 chr5 148083358 148083722 + 0 NA intron (ENSMUSG00000029651.16, intron 1 of 3) protein_coding-intron (ENSMUSG00000029651.16, intron 3 of 14) 100837 ENSMUSG00000066554.6 ENSMUSG00000066554 ENSMUST00000150411 Gm10167 processed_pseudogene Interval_19906 chr10 111116084 111117797 + 0 NA Intergenic Intergenic -8911 ENSMUSG00000091086.2 ENSMUSG00000091086 ENSMUST00000171120 Rpl6l processed_pseudogene Interval_56042 chr14 105099720 105100815 + 0 NA Intergenic Intergenic 14409 ENSMUSG00000091509.7 ENSMUSG00000091509 ENSMUST00000164319 Gm17066 processed_transcript Interval_17644 chr10 78438070 78438357 + 0 NA exon (ENSMUSG00000032788.15, exon 11 of 11) protein_coding-exon (ENSMUSG00000032788.15, exon 11 of 11) 3414 ENSMUSG00000098932.1 ENSMUSG00000098932 ENSMUST00000184204 Mir6410 miRNA Interval_124038 chr5 37716616 37718049 + 0 NA promoter-TSS (ENSMUSG00000029123.8) protein_coding-promoter-TSS (ENSMUSG00000029123.8) -161 ENSMUSG00000029123.8 ENSMUSG00000029123 ENSMUST00000094836 Stk32b protein_coding Interval_17611 chr10 78169361 78170381 + 0 NA promoter-TSS (ENSMUSG00000053329.7) protein_coding-promoter-TSS (ENSMUSG00000053329.7) -2429 ENSMUSG00000053329.7 ENSMUSG00000053329 ENSMUST00000218286 Gatd3a protein_coding Interval_3132 chr1 53838048 53838755 + 0 NA TTS (ENSMUSG00000042807.15) protein_coding-TTS (ENSMUSG00000042807.15) -11023 ENSMUSG00000098443.1 ENSMUSG00000098443 ENSMUST00000184834 Mir7681 miRNA Interval_8427 chr1 139169530 139170316 + 0 NA exon (ENSMUSG00000056268.15, exon 21 of 21) protein_coding-exon (ENSMUSG00000056268.15, exon 21 of 21) 14771 ENSMUSG00000102243.1 ENSMUSG00000102243 ENSMUST00000191655 Gm37718 TEC Interval_76550 chr17 80988163 80988722 + 0 NA intron (ENSMUSG00000024245.4, intron 2 of 3) protein_coding-intron (ENSMUSG00000024245.4, intron 2 of 3) 43810 ENSMUSG00000024245.4 ENSMUSG00000024245 ENSMUST00000025092 Tmem178 protein_coding Interval_82501 chr18 74700162 74700774 + 0 NA intron (ENSMUSG00000025885.18, intron 19 of 39) protein_coding-intron (ENSMUSG00000025885.18, intron 19 of 38) -13151 ENSMUSG00000025885.18 ENSMUSG00000025885 ENSMUST00000154986 Myo5b protein_coding Interval_116118 chr4 107889261 107890453 + 0 NA promoter-TSS (ENSMUSG00000028608.15) protein_coding-promoter-TSS (ENSMUSG00000028608.15) -3317 ENSMUSG00000028608.15 ENSMUSG00000028608 ENSMUST00000134254 Czib protein_coding Interval_7244 chr1 128191739 128191963 + 0 NA promoter-TSS (ENSMUSG00000056211.13) protein_coding-promoter-TSS (ENSMUSG00000056211.13) -10510 ENSMUSG00000065520.2 ENSMUSG00000065520 ENSMUST00000083586 Mir128-1 miRNA Interval_70894 chr17 15704190 15706120 + 0 NA exon (ENSMUSG00000023852.14, exon 1 of 36) protein_coding-exon (ENSMUSG00000023852.14, exon 1 of 36) -33380 ENSMUSG00000023852.14 ENSMUSG00000023852 ENSMUST00000173040 Chd1 protein_coding Interval_144151 chr7 19673179 19674253 + 0 NA intron (ENSMUSG00000109350.1, intron 1 of 3) protein_coding-intron (ENSMUSG00000002992.17, intron 1 of 3) 4225 ENSMUSG00000002992.17 ENSMUSG00000002992 ENSMUST00000134116 Apoc2 protein_coding Interval_135541 chr6 40236036 40237549 + 0 NA intron (ENSMUSG00000057716.7, intron 3 of 3) protein_coding-intron (ENSMUSG00000057716.7, intron 2 of 2) 10573 ENSMUSG00000102287.1 ENSMUSG00000102287 ENSMUST00000194702 Gm37003 TEC Interval_170202 chr9 106166544 106168150 + 0 NA Intergenic Intergenic -4030 ENSMUSG00000020257.13 ENSMUSG00000020257 ENSMUST00000190564 Wdr82 protein_coding Interval_16757 chr10 67984733 67985209 + 0 NA intron (ENSMUSG00000037846.18, intron 1 of 14) protein_coding-intron (ENSMUSG00000037846.18, intron 1 of 14) 5273 ENSMUSG00000037846.18 ENSMUSG00000037846 ENSMUST00000123147 Rtkn2 protein_coding Interval_161014 chr8 116920927 116922201 + 0 NA promoter-TSS (ENSMUSG00000031756.5) protein_coding-promoter-TSS (ENSMUSG00000031756.5) -183 ENSMUSG00000031756.5 ENSMUSG00000031756 ENSMUST00000212184 Cenpn protein_coding Interval_166300 chr9 58168322 58168646 + 0 NA intron (ENSMUSG00000037206.15, intron 3 of 3) protein_coding-intron (ENSMUSG00000037206.15, intron 3 of 3) 23708 ENSMUSG00000110969.1 ENSMUSG00000110969 ENSMUST00000215092 Gm47174 TEC Interval_163669 chr9 23673483 23673804 + 0 NA Intergenic Intergenic -102849 ENSMUSG00000111041.1 ENSMUSG00000111041 ENSMUST00000215669 Gm3011 processed_pseudogene Interval_166030 chr9 55598532 55599166 + 0 NA intron (ENSMUSG00000034007.10, intron 28 of 32) protein_coding-intron (ENSMUSG00000034007.10, intron 26 of 30) -43137 ENSMUSG00000064472.1 ENSMUSG00000064472 ENSMUST00000082538 Gm23407 snRNA Interval_19922 chr10 111220544 111220902 + 0 NA intron (ENSMUSG00000020189.15, intron 2 of 22) protein_coding-intron (ENSMUSG00000020189.15, intron 2 of 22) -27345 ENSMUSG00000020189.15 ENSMUSG00000020189 ENSMUST00000238838 Osbpl8 protein_coding Interval_169532 chr9 98935167 98935388 + 0 NA Intergenic Intergenic -9665 ENSMUSG00000101240.1 ENSMUSG00000101240 ENSMUST00000191410 Gm28266 processed_pseudogene Interval_77319 chr17 87993365 87993951 + 0 NA intron (ENSMUSG00000005371.15, intron 19 of 22) protein_coding-intron (ENSMUSG00000005371.15, intron 19 of 22) 18563 ENSMUSG00000005370.4 ENSMUSG00000005370 ENSMUST00000234756 Msh6 protein_coding Interval_107244 chr3 104899850 104900137 + 0 NA intron (ENSMUSG00000045576.16, intron 11 of 13) protein_coding-intron (ENSMUSG00000045576.16, intron 11 of 13) 16170 ENSMUSG00000106105.1 ENSMUSG00000106105 ENSMUST00000198831 Gm4525 processed_pseudogene Interval_7765 chr1 133520454 133521440 + 0 NA Intergenic Intergenic -8532 ENSMUSG00000101004.1 ENSMUSG00000101004 ENSMUST00000188004 Gm8596 processed_pseudogene Interval_12000 chr1 188681906 188682159 + 0 NA intron (ENSMUSG00000026609.15, intron 37 of 70) protein_coding-intron (ENSMUSG00000026609.15, intron 37 of 70) -58979 ENSMUSG00000077235.1 ENSMUSG00000077235 ENSMUST00000104047 Gm25095 snoRNA Interval_136145 chr6 51498497 51499224 + 0 NA Intergenic Intergenic 21402 ENSMUSG00000029836.15 ENSMUSG00000029836 ENSMUST00000203404 Cbx3 protein_coding Interval_29522 chr11 84662018 84662459 + 0 NA Intergenic Intergenic 58194 ENSMUSG00000085044.1 ENSMUSG00000085044 ENSMUST00000150735 1700109G15Rik lincRNA Interval_2109 chr1 36486986 36487291 + 0 NA intron (ENSMUSG00000037408.10, intron 1 of 6) protein_coding-intron (ENSMUSG00000037408.10, intron 1 of 6) 13186 ENSMUSG00000104316.1 ENSMUSG00000104316 ENSMUST00000193157 Gm37909 TEC Interval_110450 chr3 158281223 158281825 + 0 NA intron (ENSMUSG00000028176.13, intron 7 of 24) protein_coding-intron (ENSMUSG00000028176.13, intron 8 of 27) -12890 ENSMUSG00000106448.1 ENSMUSG00000106448 ENSMUST00000196431 Gm43486 TEC Interval_49563 chr13 112985591 112986227 + 0 NA Intergenic Intergenic -1895 ENSMUSG00000042417.5 ENSMUSG00000042417 ENSMUST00000224100 Ccno protein_coding Interval_13862 chr10 24040474 24040712 + 0 NA Intergenic Intergenic 2979 ENSMUSG00000100689.1 ENSMUSG00000100689 ENSMUST00000092656 Taar7e protein_coding Interval_85822 chr19 32170146 32170360 + 0 NA intron (ENSMUSG00000040451.18, intron 3 of 10) protein_coding-intron (ENSMUSG00000040451.18, intron 5 of 9) 39020 ENSMUSG00000118064.1 ENSMUSG00000118064 ENSMUST00000235377 Gm50210 sense_intronic Interval_11168 chr1 179820300 179820718 + 0 NA Intergenic Intergenic 17133 ENSMUSG00000073486.2 ENSMUSG00000073486 ENSMUST00000097454 Gm10518 antisense Interval_159107 chr8 90725890 90726119 + 0 NA intron (ENSMUSG00000109870.1, intron 3 of 5) lincRNA-intron (ENSMUSG00000109870.1, intron 3 of 5) 12626 ENSMUSG00000109870.1 ENSMUSG00000109870 ENSMUST00000211705 Gm35850 lincRNA Interval_49837 chr13 116959101 116959272 + 0 NA intron (ENSMUSG00000021725.9, intron 2 of 24) protein_coding-intron (ENSMUSG00000021725.9, intron 3 of 26) 66087 ENSMUSG00000021725.9 ENSMUSG00000021725 ENSMUST00000223833 Parp8 protein_coding Interval_88533 chr2 5888659 5889171 + 0 NA intron (ENSMUSG00000025816.15, intron 3 of 5) protein_coding-intron (ENSMUSG00000025816.15, intron 3 of 7) 6419 ENSMUSG00000025816.15 ENSMUSG00000025816 ENSMUST00000194565 Sec61a2 protein_coding Interval_12515 chr1 194722275 194722619 + 0 NA intron (ENSMUSG00000026640.12, intron 4 of 31) protein_coding-intron (ENSMUSG00000026640.12, intron 4 of 31) -10260 ENSMUSG00000103776.1 ENSMUSG00000103776 ENSMUST00000194966 2900035J10Rik TEC Interval_7700 chr1 133141581 133143108 + 0 NA Intergenic Intergenic -10562 ENSMUSG00000102425.1 ENSMUSG00000102425 ENSMUST00000193049 Gm26616 TEC Interval_11336 chr1 181029747 181030568 + 0 NA TTS (ENSMUSG00000102858.1) TEC-TTS (ENSMUSG00000102858.1) 3879 ENSMUSG00000102858.1 ENSMUSG00000102858 ENSMUST00000193082 Gm37086 TEC Interval_57746 chr15 18209895 18210124 + 0 NA intron (ENSMUSG00000098150.2, intron 1 of 7) processed_transcript-intron (ENSMUSG00000098150.2, intron 1 of 7) 46128 ENSMUSG00000098222.2 ENSMUSG00000098222 ENSMUST00000182954 Gm8318 processed_pseudogene Interval_25899 chr11 52411060 52411493 + 0 NA Intergenic Intergenic 5960 ENSMUSG00000080951.1 ENSMUSG00000080951 ENSMUST00000122004 Gm12208 processed_pseudogene Interval_72745 chr17 31890413 31891022 + 0 NA Intergenic Intergenic 8461 ENSMUSG00000117562.2 ENSMUSG00000117562 ENSMUST00000234078 Gm50000 lincRNA Interval_71124 chr17 18937275 18937499 + 0 NA intron (ENSMUSG00000091491.2, intron 4 of 5) protein_coding-intron (ENSMUSG00000091491.2, intron 4 of 5) 23087 ENSMUSG00000091491.2 ENSMUSG00000091491 ENSMUST00000232219 Vmn2r97 protein_coding Interval_109198 chr3 137847694 137848615 + 0 NA Intergenic Intergenic 16029 ENSMUSG00000105676.1 ENSMUSG00000105676 ENSMUST00000198830 Gm43403 antisense Interval_104735 chr3 69931254 69932129 + 0 NA Intergenic Intergenic 23991 ENSMUSG00000103549.1 ENSMUSG00000103549 ENSMUST00000194028 Gm17895 processed_pseudogene Interval_26067 chr11 53878030 53878404 + 0 NA intron (ENSMUSG00000018900.7, intron 2 of 9) protein_coding-intron (ENSMUSG00000018900.7, intron 2 of 9) -6540 ENSMUSG00000018900.7 ENSMUSG00000018900 ENSMUST00000136307 Slc22a5 protein_coding Interval_1052 chr1 14496310 14497707 + 0 NA Intergenic Intergenic -192438 ENSMUSG00000025932.14 ENSMUSG00000025932 ENSMUST00000185329 Eya1 protein_coding Interval_155865 chr8 40381371 40381900 + 0 NA intron (ENSMUSG00000039478.15, intron 6 of 7) protein_coding-intron (ENSMUSG00000039478.15, intron 13 of 14) 27332 ENSMUSG00000039478.15 ENSMUSG00000039478 ENSMUST00000132481 Micu3 protein_coding Interval_2258 chr1 37442369 37442708 + 0 NA exon (ENSMUSG00000026110.15, exon 15 of 15) protein_coding-exon (ENSMUSG00000026110.15, exon 15 of 15) 12352 ENSMUSG00000026111.15 ENSMUSG00000026111 ENSMUST00000134184 Unc50 protein_coding Interval_126833 chr5 93422483 93422847 + 0 NA intron (ENSMUSG00000106699.1, intron 1 of 1) unprocessed_pseudogene-intron (ENSMUSG00000106699.1, intron 1 of 1) 993 ENSMUSG00000106699.1 ENSMUSG00000106699 ENSMUST00000201567 Gm43224 unprocessed_pseudogene Interval_168857 chr9 88113971 88114191 + 0 NA Intergenic Intergenic 8684 ENSMUSG00000099886.1 ENSMUSG00000099886 ENSMUST00000187464 Gm2324 processed_pseudogene Interval_844 chr1 12572844 12573265 + 0 NA Intergenic Intergenic 7477 ENSMUSG00000097628.1 ENSMUSG00000097628 ENSMUST00000181461 Gm2383 processed_pseudogene Interval_165332 chr9 46353599 46354621 + 0 NA intron (ENSMUSG00000110864.1, intron 4 of 4) lincRNA-intron (ENSMUSG00000110864.1, intron 4 of 4) 11335 ENSMUSG00000110864.1 ENSMUSG00000110864 ENSMUST00000214913 Gm31374 lincRNA Interval_56470 chr14 118967455 118968420 + 0 NA intron (ENSMUSG00000022136.8, intron 4 of 11) protein_coding-intron (ENSMUSG00000022136.8, intron 4 of 11) 15823 ENSMUSG00000115220.1 ENSMUSG00000115220 ENSMUST00000227218 Gm49768 lincRNA Interval_128123 chr5 111131599 111132139 + 0 NA intron (ENSMUSG00000033209.17, intron 5 of 22) protein_coding-intron (ENSMUSG00000033209.17, intron 5 of 23) -26442 ENSMUSG00000106153.1 ENSMUSG00000106153 ENSMUST00000198098 Gm43677 TEC Interval_29292 chr11 82731136 82731352 + 0 NA intron (ENSMUSG00000020698.11, intron 10 of 13) protein_coding-intron (ENSMUSG00000020698.11, intron 10 of 13) 3244 ENSMUSG00000083371.1 ENSMUSG00000083371 ENSMUST00000118925 Gm11422 processed_pseudogene Interval_62184 chr15 88661837 88663492 + 0 NA Intergenic Intergenic 56491 ENSMUSG00000022387.17 ENSMUSG00000022387 ENSMUST00000139515 Brd1 protein_coding Interval_85882 chr19 32693766 32694322 + 0 NA intron (ENSMUSG00000013662.6, intron 6 of 8) protein_coding-intron (ENSMUSG00000013662.6, intron 6 of 9) 826 ENSMUSG00000013662.6 ENSMUSG00000013662 ENSMUST00000237933 Atad1 protein_coding Interval_106339 chr3 95468759 95469819 + 0 NA intron (ENSMUSG00000015522.18, intron 1 of 17) protein_coding-intron (ENSMUSG00000015522.18, intron 5 of 21) 3001 ENSMUSG00000015522.18 ENSMUSG00000015522 ENSMUST00000147094 Arnt protein_coding Interval_16610 chr10 65389397 65390100 + 0 NA Intergenic Intergenic -26998 ENSMUSG00000112114.1 ENSMUSG00000112114 ENSMUST00000219764 Gm7540 processed_pseudogene Interval_105436 chr3 86284110 86284761 + 0 NA intron (ENSMUSG00000028080.16, intron 1 of 38) protein_coding-intron (ENSMUSG00000028080.16, intron 2 of 56) -9073 ENSMUSG00000077744.1 ENSMUSG00000077744 ENSMUST00000104556 Gm26343 snoRNA Interval_35044 chr12 16838849 16839489 + 0 NA intron (ENSMUSG00000057469.8, intron 9 of 9) protein_coding-intron (ENSMUSG00000057469.8, intron 9 of 9) 11712 ENSMUSG00000114018.1 ENSMUSG00000114018 ENSMUST00000221201 Gm36495 lincRNA Interval_32448 chr11 107587546 107587879 + 0 NA intron (ENSMUSG00000020721.16, intron 5 of 32) protein_coding-intron (ENSMUSG00000020721.16, intron 4 of 31) -39339 ENSMUSG00000059706.4 ENSMUSG00000059706 ENSMUST00000147445 A830035A12Rik processed_transcript Interval_144910 chr7 28886446 28886729 + 0 NA TTS (ENSMUSG00000109307.1) antisense-TTS (ENSMUSG00000109307.1) 1896 ENSMUSG00000109307.1 ENSMUSG00000109307 ENSMUST00000208228 Gm44700 antisense Interval_137990 chr6 84016713 84017581 + 0 NA intron (ENSMUSG00000033788.15, intron 1 of 55) protein_coding-intron (ENSMUSG00000033788.15, intron 1 of 54) -2238 ENSMUSG00000033788.15 ENSMUSG00000033788 ENSMUST00000128965 Dysf protein_coding Interval_154935 chr8 25172106 25172364 + 0 NA intron (ENSMUSG00000065954.11, intron 6 of 8) protein_coding-intron (ENSMUSG00000065954.11, intron 5 of 12) -13002 ENSMUSG00000099142.1 ENSMUSG00000099142 ENSMUST00000184998 Mir8108 miRNA Interval_141357 chr6 127614267 127615027 + 0 NA intron (ENSMUSG00000061414.8, intron 6 of 18) protein_coding-intron (ENSMUSG00000061414.8, intron 5 of 6) -29793 ENSMUSG00000107253.1 ENSMUSG00000107253 ENSMUST00000202671 Gm43634 lincRNA Interval_62040 chr15 86058033 86059496 + 0 NA promoter-TSS (ENSMUSG00000035900.18) protein_coding-promoter-TSS (ENSMUSG00000035900.18) -15969 ENSMUSG00000035900.18 ENSMUSG00000035900 ENSMUST00000147286 Gramd4 protein_coding Interval_136858 chr6 61523833 61524565 + 0 NA intron (ENSMUSG00000039578.17, intron 3 of 3) protein_coding-intron (ENSMUSG00000039578.17, intron 4 of 9) 123592 ENSMUSG00000107757.1 ENSMUSG00000107757 ENSMUST00000204456 Gm43898 processed_pseudogene Interval_16271 chr10 61838796 61839078 + 0 NA intron (ENSMUSG00000058806.15, intron 4 of 4) protein_coding-intron (ENSMUSG00000058806.15, intron 24 of 24) 10274 ENSMUSG00000058806.15 ENSMUSG00000058806 ENSMUST00000153120 Col13a1 protein_coding Interval_93737 chr2 76359834 76360932 + 0 NA promoter-TSS (ENSMUSG00000056436.4) protein_coding-promoter-TSS (ENSMUSG00000056436.4) 67 ENSMUSG00000056436.4 ENSMUSG00000056436 ENSMUST00000028430 Cyct protein_coding Interval_98173 chr2 149306913 149307113 + 0 NA Intergenic Intergenic 27776 ENSMUSG00000081314.1 ENSMUSG00000081314 ENSMUST00000117188 Gm14132 processed_pseudogene Interval_20222 chr10 116235001 116235976 + 0 NA intron (ENSMUSG00000020151.16, intron 5 of 10) protein_coding-intron (ENSMUSG00000020151.16, intron 8 of 13) -40035 ENSMUSG00000020154.10 ENSMUSG00000020154 ENSMUST00000092167 Ptprb protein_coding Interval_111968 chr4 32887769 32889143 + 0 NA intron (ENSMUSG00000040183.13, intron 1 of 16) protein_coding-intron (ENSMUSG00000040183.13, intron 1 of 16) -4230 ENSMUSG00000083565.1 ENSMUSG00000083565 ENSMUST00000119904 Gm11941 processed_pseudogene Interval_125189 chr5 65213039 65213597 + 0 NA intron (ENSMUSG00000037890.13, intron 5 of 25) protein_coding-intron (ENSMUSG00000037890.13, intron 5 of 36) 13601 ENSMUSG00000037890.13 ENSMUSG00000037890 ENSMUST00000203554 Wdr19 protein_coding Interval_56652 chr14 121171610 121172477 + 0 NA intron (ENSMUSG00000025555.14, intron 1 of 7) protein_coding-intron (ENSMUSG00000025555.14, intron 2 of 26) 69964 ENSMUSG00000025555.14 ENSMUSG00000025555 ENSMUST00000137971 Farp1 protein_coding Interval_140688 chr6 120592047 120592755 + 0 NA Intergenic Intergenic -12225 ENSMUSG00000107580.1 ENSMUSG00000107580 ENSMUST00000204159 Gm44124 TEC Interval_6969 chr1 121457418 121458620 + 0 NA intron (ENSMUSG00000026339.18, intron 7 of 23) protein_coding-intron (ENSMUSG00000026339.18, intron 7 of 23) 26944 ENSMUSG00000026339.18 ENSMUSG00000026339 ENSMUST00000152959 Ccdc93 protein_coding Interval_45938 chr13 59473474 59473788 + 0 NA TTS (ENSMUSG00000021557.15) protein_coding-TTS (ENSMUSG00000021557.15) -8343 ENSMUSG00000021557.15 ENSMUSG00000021557 ENSMUST00000163284 Agtpbp1 protein_coding Interval_81312 chr18 57838774 57840867 + 0 NA Intergenic Intergenic -47460 ENSMUSG00000118391.1 ENSMUSG00000118391 ENSMUST00000236807 Gm19519 antisense Interval_74638 chr17 54049614 54050798 + 0 NA Intergenic Intergenic 47834 ENSMUSG00000104810.1 ENSMUSG00000104810 ENSMUST00000198419 Gm5684 processed_pseudogene Interval_137912 chr6 83308292 83308609 + 0 NA TTS (ENSMUSG00000005667.8) protein_coding-TTS (ENSMUSG00000005667.8) 8493 ENSMUSG00000108053.1 ENSMUSG00000108053 ENSMUST00000203437 Gm43890 TEC Interval_59905 chr15 61450434 61450687 + 0 NA Intergenic Intergenic -92556 ENSMUSG00000065812.1 ENSMUSG00000065812 ENSMUST00000083878 Gm24696 snoRNA Interval_72514 chr17 30347236 30347902 + 0 NA intron (ENSMUSG00000062202.14, intron 4 of 7) protein_coding-intron (ENSMUSG00000062202.14, intron 6 of 11) 36490 ENSMUSG00000089222.1 ENSMUSG00000089222 ENSMUST00000158597 Gm25049 snRNA Interval_112592 chr4 43441941 43443861 + 0 NA promoter-TSS (ENSMUSG00000028458.12) protein_coding-promoter-TSS (ENSMUSG00000028458.12) -2049 ENSMUSG00000028458.12 ENSMUSG00000028458 ENSMUST00000156810 Tesk1 protein_coding Interval_79338 chr18 30695310 30695752 + 0 NA Intergenic Intergenic -86641 ENSMUSG00000117526.1 ENSMUSG00000117526 ENSMUST00000235078 Gm41780 processed_pseudogene Interval_29161 chr11 80851878 80852375 + 0 NA intron (ENSMUSG00000086703.1, intron 1 of 2) antisense-intron (ENSMUSG00000086703.1, intron 1 of 2) 6174 ENSMUSG00000086703.1 ENSMUSG00000086703 ENSMUST00000137411 4930507D10Rik antisense Interval_135719 chr6 44898636 44899046 + 0 NA Intergenic Intergenic -67082 ENSMUSG00000107904.1 ENSMUSG00000107904 ENSMUST00000204977 Gm44213 processed_pseudogene Interval_158287 chr8 80842335 80843171 + 0 NA intron (ENSMUSG00000031714.9, intron 1 of 10) protein_coding-intron (ENSMUSG00000031714.9, intron 1 of 9) -11869 ENSMUSG00000031714.9 ENSMUSG00000031714 ENSMUST00000211018 Gab1 protein_coding Interval_30336 chr11 93691786 93692265 + 0 NA Intergenic Intergenic -3057 ENSMUSG00000080872.1 ENSMUSG00000080872 ENSMUST00000122414 Gm11506 processed_pseudogene Interval_20308 chr10 116786703 116787379 + 0 NA intron (ENSMUSG00000034057.8, intron 19 of 24) protein_coding-intron (ENSMUSG00000034057.8, intron 19 of 24) 57788 ENSMUSG00000112924.1 ENSMUSG00000112924 ENSMUST00000218193 4930579P08Rik lincRNA Interval_15883 chr10 58746700 58746942 + 0 NA Intergenic Intergenic -10449 ENSMUSG00000112424.1 ENSMUSG00000112424 ENSMUST00000218604 Gm6494 processed_pseudogene Interval_113052 chr4 47241864 47242195 + 0 NA intron (ENSMUSG00000028339.17, intron 2 of 2) protein_coding-intron (ENSMUSG00000028339.17, intron 2 of 38) -16506 ENSMUSG00000028339.17 ENSMUSG00000028339 ENSMUST00000107730 Col15a1 protein_coding Interval_68183 chr16 67068506 67070336 + 0 NA intron (ENSMUSG00000064115.13, intron 1 of 9) protein_coding-intron (ENSMUSG00000064115.13, intron 1 of 9) -143837 ENSMUSG00000064115.13 ENSMUSG00000064115 ENSMUST00000141282 Cadm2 protein_coding Interval_43929 chr13 38121451 38122090 + 0 NA Intergenic Intergenic 30022 ENSMUSG00000103789.1 ENSMUSG00000103789 ENSMUST00000191991 Gm10129 TEC Interval_125664 chr5 73140960 73142334 + 0 NA intron (ENSMUSG00000070733.13, intron 2 of 19) protein_coding-intron (ENSMUSG00000070733.13, intron 1 of 59) -15367 ENSMUSG00000086376.2 ENSMUSG00000086376 ENSMUST00000146728 1700071G01Rik antisense Interval_116177 chr4 108394771 108395041 + 0 NA Intergenic Intergenic -11557 ENSMUSG00000059816.5 ENSMUSG00000059816 ENSMUST00000053157 Shisal2a protein_coding Interval_72786 chr17 32180160 32180402 + 0 NA Intergenic Intergenic 3056 ENSMUSG00000117925.1 ENSMUSG00000117925 ENSMUST00000236191 Gm50127 processed_pseudogene Interval_12717 chr10 4479820 4480690 + 0 NA Intergenic Intergenic -3979 ENSMUSG00000065371.1 ENSMUSG00000065371 ENSMUST00000083437 Gm22739 snRNA Interval_70726 chr17 13902620 13903064 + 0 NA intron (ENSMUSG00000068036.16, intron 32 of 32) protein_coding-intron (ENSMUSG00000068036.16, intron 2 of 2) -8406 ENSMUSG00000115221.1 ENSMUSG00000115221 ENSMUST00000227377 Gm49121 unitary_pseudogene Interval_161398 chr8 120228207 120230345 + 0 NA exon (ENSMUSG00000031822.20, exon 1 of 3) protein_coding-exon (ENSMUSG00000031822.20, exon 1 of 3) -1046 ENSMUSG00000097960.1 ENSMUSG00000097960 ENSMUST00000183235 A330074K22Rik lincRNA Interval_107015 chr3 102979723 102980291 + 0 NA Intergenic Intergenic -16169 ENSMUSG00000027854.12 ENSMUSG00000027854 ENSMUST00000196827 Sike1 protein_coding Interval_97431 chr2 136141016 136141624 + 0 NA intron (ENSMUSG00000039913.12, intron 3 of 9) protein_coding-intron (ENSMUSG00000039913.12, intron 4 of 10) 4314 ENSMUSG00000085383.1 ENSMUSG00000085383 ENSMUST00000137802 Gm14218 antisense Interval_167935 chr9 74735024 74735344 + 0 NA Intergenic Intergenic 25922 ENSMUSG00000098272.1 ENSMUSG00000098272 ENSMUST00000184030 Gm27233 processed_pseudogene Interval_88560 chr2 6142732 6143360 + 0 NA Intergenic Intergenic -9090 ENSMUSG00000082332.2 ENSMUSG00000082332 ENSMUST00000117166 Gm13384 processed_pseudogene Interval_135300 chr6 38160442 38160795 + 0 NA intron (ENSMUSG00000063455.16, intron 10 of 19) protein_coding-intron (ENSMUSG00000063455.16, intron 10 of 19) 42235 ENSMUSG00000087924.1 ENSMUSG00000087924 ENSMUST00000157299 Gm23231 snRNA Interval_81811 chr18 64935802 64936293 + 0 NA intron (ENSMUSG00000024589.18, intron 1 of 29) protein_coding-intron (ENSMUSG00000024589.18, intron 1 of 29) -47556 ENSMUSG00000114210.2 ENSMUSG00000114210 ENSMUST00000224731 A330084C13Rik antisense Interval_80227 chr18 38389894 38390559 + 0 NA Intergenic Intergenic 23058 ENSMUSG00000117986.1 ENSMUSG00000117986 ENSMUST00000235696 Gm50344 processed_pseudogene Interval_165399 chr9 47448901 47449466 + 0 NA Intergenic Intergenic 25735 ENSMUSG00000111755.1 ENSMUSG00000111755 ENSMUST00000214343 Gm47160 TEC Interval_49687 chr13 113994643 113994998 + 0 NA intron (ENSMUSG00000042348.10, intron 5 of 5) protein_coding-intron (ENSMUSG00000042348.10, intron 4 of 4) 125596 ENSMUSG00000114696.1 ENSMUSG00000114696 ENSMUST00000223997 Gm47479 TEC Interval_169167 chr9 94837793 94839385 + 0 NA intron (ENSMUSG00000031129.9, intron 5 of 15) protein_coding-intron (ENSMUSG00000031129.9, intron 5 of 15) 86760 ENSMUSG00000098251.1 ENSMUSG00000098251 ENSMUST00000183864 Mir7656 miRNA Interval_146783 chr7 51126593 51126964 + 0 NA Intergenic Intergenic 28646 ENSMUSG00000109202.1 ENSMUSG00000109202 ENSMUST00000209086 Gm21037 processed_pseudogene Interval_174636 chrX 161062269 161062547 + 0 NA Intergenic Intergenic -20117 ENSMUSG00000000037.17 ENSMUSG00000000037 ENSMUST00000238361 Scml2 protein_coding Interval_59769 chr15 59122744 59123201 + 0 NA Intergenic Intergenic -40967 ENSMUSG00000022353.10 ENSMUSG00000022353 ENSMUST00000227797 Mtss1 protein_coding Interval_21500 chr10 128945725 128945912 + 0 NA TTS (ENSMUSG00000088768.1) snRNA-TTS (ENSMUSG00000088768.1) 913 ENSMUSG00000088768.1 ENSMUSG00000088768 ENSMUST00000158143 Gm25494 snRNA Interval_15160 chr10 42967371 42969039 + 0 NA Intergenic Intergenic -66788 ENSMUSG00000111171.1 ENSMUSG00000111171 ENSMUST00000213469 Gm47815 antisense Interval_54898 chr14 76100450 76101130 + 0 NA intron (ENSMUSG00000022008.4, intron 4 of 7) protein_coding-intron (ENSMUSG00000022008.4, intron 4 of 7) 9970 ENSMUSG00000022008.4 ENSMUSG00000022008 ENSMUST00000022585 Gpalpp1 protein_coding Interval_111515 chr4 22328146 22329522 + 0 NA Intergenic Intergenic -28726 ENSMUSG00000040410.14 ENSMUSG00000040410 ENSMUST00000184582 Fbxl4 protein_coding Interval_111273 chr4 16544665 16545907 + 0 NA Intergenic Intergenic 80410 ENSMUSG00000086072.1 ENSMUSG00000086072 ENSMUST00000141571 Gm11861 lincRNA Interval_101190 chr2 179200417 179200992 + 0 NA Intergenic Intergenic 23279 ENSMUSG00000061897.5 ENSMUSG00000061897 ENSMUST00000118761 Gm14292 processed_pseudogene Interval_127514 chr5 104774484 104775330 + 0 NA promoter-TSS (ENSMUSG00000048334.8) processed_pseudogene-promoter-TSS (ENSMUSG00000048334.8) -872 ENSMUSG00000048334.8 ENSMUSG00000048334 ENSMUST00000055593 Gm8258 processed_pseudogene Interval_81376 chr18 59802593 59802825 + 0 NA Intergenic Intergenic -28238 ENSMUSG00000118327.1 ENSMUSG00000118327 ENSMUST00000235423 Gm8697 processed_pseudogene Interval_44656 chr13 46963495 46963686 + 0 NA Intergenic Intergenic -17130 ENSMUSG00000089131.1 ENSMUSG00000089131 ENSMUST00000158506 Gm24769 snoRNA Interval_60743 chr15 76476831 76478200 + 0 NA promoter-TSS (ENSMUSG00000022557.11) protein_coding-promoter-TSS (ENSMUSG00000022557.11) 20063 ENSMUSG00000034161.8 ENSMUSG00000034161 ENSMUST00000043089 Scx protein_coding Interval_112643 chr4 43759681 43760681 + 0 NA TTS (ENSMUSG00000028475.9) protein_coding-TTS (ENSMUSG00000028475.9) 7596 ENSMUSG00000083417.1 ENSMUSG00000083417 ENSMUST00000120783 Olfr269-ps1 unprocessed_pseudogene Interval_73552 chr17 40323875 40324069 + 0 NA Intergenic Intergenic -4765 ENSMUSG00000025431.4 ENSMUSG00000025431 ENSMUST00000026498 Crisp1 protein_coding Interval_73614 chr17 41199324 41199989 + 0 NA Intergenic Intergenic 98618 ENSMUSG00000117062.1 ENSMUSG00000117062 ENSMUST00000232966 Ldha-ps3 processed_pseudogene Interval_29824 chr11 87085356 87085552 + 0 NA promoter-TSS (ENSMUSG00000020495.13) protein_coding-promoter-TSS (ENSMUSG00000020495.13) -72 ENSMUSG00000020495.13 ENSMUSG00000020495 ENSMUST00000143280 Smg8 protein_coding Interval_108807 chr3 131626710 131628084 + 0 NA intron (ENSMUSG00000028032.13, intron 13 of 14) protein_coding-intron (ENSMUSG00000028032.13, intron 10 of 11) -13617 ENSMUSG00000105973.1 ENSMUSG00000105973 ENSMUST00000198636 Gm42881 TEC Interval_84434 chr19 10890797 10891179 + 0 NA Intergenic Intergenic -9290 ENSMUSG00000034659.14 ENSMUSG00000034659 ENSMUST00000151355 Tmem109 protein_coding Interval_147853 chr7 74318611 74318862 + 0 NA intron (ENSMUSG00000025790.14, intron 6 of 8) protein_coding-intron (ENSMUSG00000025790.14, intron 6 of 9) 28495 ENSMUSG00000025790.14 ENSMUSG00000025790 ENSMUST00000129292 Slco3a1 protein_coding Interval_33451 chr11 116615790 116616804 + 0 NA intron (ENSMUSG00000020806.15, intron 1 of 18) protein_coding-intron (ENSMUSG00000020806.15, intron 1 of 18) -13702 ENSMUSG00000020806.15 ENSMUSG00000020806 ENSMUST00000126819 Rhbdf2 protein_coding Interval_168674 chr9 85720596 85720799 + 0 NA exon (ENSMUSG00000035941.15, exon 12 of 12) protein_coding-exon (ENSMUSG00000035941.15, exon 12 of 12) -2159 ENSMUSG00000035941.15 ENSMUSG00000035941 ENSMUST00000186447 Ibtk protein_coding Interval_151378 chr7 121955574 121955761 + 0 NA intron (ENSMUSG00000034951.10, intron 7 of 16) protein_coding-intron (ENSMUSG00000034951.10, intron 7 of 16) -26094 ENSMUSG00000108511.1 ENSMUSG00000108511 ENSMUST00000206578 Gm44987 antisense Interval_116833 chr4 117565999 117566207 + 0 NA intron (ENSMUSG00000033423.16, intron 1 of 7) protein_coding-intron (ENSMUSG00000033423.16, intron 3 of 8) 1345 ENSMUSG00000033423.16 ENSMUSG00000033423 ENSMUST00000134379 Eri3 protein_coding Interval_60930 chr15 77949436 77949833 + 0 NA intron (ENSMUSG00000016552.13, intron 5 of 8) protein_coding-intron (ENSMUSG00000016552.13, intron 5 of 8) -3746 ENSMUSG00000016552.13 ENSMUSG00000016552 ENSMUST00000129045 Foxred2 protein_coding Interval_34497 chr12 4651700 4652243 + 0 NA intron (ENSMUSG00000020640.10, intron 18 of 39) protein_coding-intron (ENSMUSG00000020640.10, intron 17 of 38) 3917 ENSMUSG00000111971.1 ENSMUSG00000111971 ENSMUST00000218352 Gm48678 antisense Interval_82105 chr18 67762811 67763589 + 0 NA Intergenic Intergenic 11657 ENSMUSG00000097835.1 ENSMUSG00000097835 ENSMUST00000180450 Gm26910 bidirectional_promoter_lncRNA Interval_72244 chr17 28781361 28781946 + 0 NA Intergenic Intergenic 12356 ENSMUSG00000004864.13 ENSMUSG00000004864 ENSMUST00000004986 Mapk13 protein_coding Interval_21879 chr11 4915605 4916741 + 0 NA intron (ENSMUSG00000034274.11, intron 1 of 3) protein_coding-intron (ENSMUSG00000034274.11, intron 12 of 19) 867 ENSMUSG00000034274.11 ENSMUSG00000034274 ENSMUST00000155872 Thoc5 protein_coding Interval_60461 chr15 73962809 73963716 + 0 NA Intergenic Intergenic 37651 ENSMUSG00000116256.1 ENSMUSG00000116256 ENSMUST00000230277 Gm32405 lincRNA Interval_51169 chr14 24358332 24359108 + 0 NA exon (ENSMUSG00000114913.1, exon 1 of 1) processed_pseudogene-exon (ENSMUSG00000114913.1, exon 1 of 1) 361 ENSMUSG00000114913.1 ENSMUSG00000114913 ENSMUST00000223662 Gm18276 processed_pseudogene Interval_150189 chr7 107747764 107748252 + 0 NA TTS (ENSMUSG00000048065.8) protein_coding-TTS (ENSMUSG00000048065.8) 9988 ENSMUSG00000048065.8 ENSMUSG00000048065 ENSMUST00000208217 Cyb5r2 protein_coding Interval_65587 chr16 23701207 23701462 + 0 NA Intergenic Intergenic 17421 ENSMUSG00000083681.1 ENSMUSG00000083681 ENSMUST00000120629 Gm6640 processed_pseudogene Interval_71935 chr17 27095477 27096135 + 0 NA intron (ENSMUSG00000042644.9, intron 17 of 57) protein_coding-intron (ENSMUSG00000042644.9, intron 17 of 57) 4561 ENSMUSG00000098826.1 ENSMUSG00000098826 ENSMUST00000184226 Mir7677 miRNA Interval_151174 chr7 118976409 118977131 + 0 NA promoter-TSS (ENSMUSG00000008734.9) protein_coding-promoter-TSS (ENSMUSG00000008734.9) -7084 ENSMUSG00000109517.1 ENSMUSG00000109517 ENSMUST00000208287 Gm44763 antisense Interval_77813 chr18 3907038 3907230 + 0 NA Intergenic Intergenic 47026 ENSMUSG00000084719.1 ENSMUSG00000084719 ENSMUST00000122770 Gm24632 misc_RNA Interval_42371 chr13 12431598 12431788 + 0 NA exon (ENSMUSG00000050244.9, exon 36 of 45) protein_coding-exon (ENSMUSG00000050244.9, exon 36 of 45) -6088 ENSMUSG00000113931.1 ENSMUSG00000113931 ENSMUST00000221839 Gm5928 processed_pseudogene Interval_140194 chr6 115251305 115252889 + 0 NA promoter-TSS (ENSMUSG00000009394.13) protein_coding-promoter-TSS (ENSMUSG00000009394.13) -249 ENSMUSG00000030317.8 ENSMUSG00000030317 ENSMUST00000205131 Timp4 protein_coding Interval_54848 chr14 75806900 75807135 + 0 NA Intergenic Intergenic -20012 ENSMUSG00000022003.7 ENSMUSG00000022003 ENSMUST00000228379 Slc25a30 protein_coding Interval_99869 chr2 165399442 165399783 + 0 NA intron (ENSMUSG00000027670.4, intron 1 of 2) protein_coding-intron (ENSMUSG00000027670.4, intron 1 of 2) 793 ENSMUSG00000027670.4 ENSMUSG00000027670 ENSMUST00000029213 Ocstamp protein_coding Interval_62748 chr15 96605827 96606113 + 0 NA intron (ENSMUSG00000023169.15, intron 4 of 11) protein_coding-intron (ENSMUSG00000023169.15, intron 4 of 15) 36243 ENSMUSG00000023169.15 ENSMUSG00000023169 ENSMUST00000229253 Slc38a1 protein_coding Interval_119122 chr4 135683685 135683961 + 0 NA Intergenic Intergenic -2464 ENSMUSG00000062157.6 ENSMUSG00000062157 ENSMUST00000074408 Ifnlr1 protein_coding Interval_6877 chr1 120275616 120276613 + 0 NA Intergenic Intergenic -10859 ENSMUSG00000026389.16 ENSMUSG00000026389 ENSMUST00000112643 Steap3 protein_coding Interval_151941 chr7 127677032 127677505 + 0 NA intron (ENSMUSG00000030814.17, intron 4 of 4) protein_coding-intron (ENSMUSG00000030814.17, intron 4 of 4) -14667 ENSMUSG00000108801.1 ENSMUSG00000108801 ENSMUST00000205284 Gm39090 lincRNA Interval_32002 chr11 104388604 104389638 + 0 NA intron (ENSMUSG00000018412.16, intron 2 of 13) protein_coding-intron (ENSMUSG00000018412.16, intron 3 of 14) 36179 ENSMUSG00000106014.1 ENSMUSG00000106014 ENSMUST00000195891 Gm47315 miRNA Interval_141350 chr6 127513428 127514130 + 0 NA Intergenic Intergenic 27986 ENSMUSG00000106962.1 ENSMUSG00000106962 ENSMUST00000202455 Gm43633 TEC Interval_20888 chr10 121750184 121750909 + 0 NA promoter-TSS (ENSMUSG00000053684.8) protein_coding-promoter-TSS (ENSMUSG00000053684.8) -334 ENSMUSG00000053684.8 ENSMUSG00000053684 ENSMUST00000138630 BC048403 protein_coding Interval_114677 chr4 83680676 83681452 + 0 NA exon (ENSMUSG00000052407.17, exon 17 of 26) protein_coding-exon (ENSMUSG00000052407.17, exon 17 of 26) -20020 ENSMUSG00000080793.1 ENSMUSG00000080793 ENSMUST00000118595 Cbx3-ps3 processed_pseudogene Interval_21990 chr11 5604857 5605406 + 0 NA intron (ENSMUSG00000020481.15, intron 10 of 25) protein_coding-intron (ENSMUSG00000020481.15, intron 8 of 26) -29008 ENSMUSG00000081021.1 ENSMUSG00000081021 ENSMUST00000120982 Gm11964 processed_pseudogene Interval_48622 chr13 100703651 100704101 + 0 NA intron (ENSMUSG00000069089.8, intron 10 of 10) protein_coding-intron (ENSMUSG00000069089.8, intron 11 of 11) 27024 ENSMUSG00000069089.8 ENSMUSG00000069089 ENSMUST00000225578 Cdk7 protein_coding Interval_22710 chr11 13668137 13668557 + 0 NA Intergenic Intergenic -493732 ENSMUSG00000081631.1 ENSMUSG00000081631 ENSMUST00000121451 Gm12005 processed_pseudogene Interval_110765 chr4 8135231 8137809 + 0 NA Intergenic Intergenic 17900 ENSMUSG00000083068.1 ENSMUSG00000083068 ENSMUST00000120050 Gm11800 processed_pseudogene Interval_151081 chr7 118409387 118410288 + 0 NA intron (ENSMUSG00000058420.8, intron 6 of 7) protein_coding-intron (ENSMUSG00000058420.8, intron 6 of 7) 38219 ENSMUSG00000058420.8 ENSMUSG00000058420 ENSMUST00000207650 Syt17 protein_coding Interval_142331 chr6 140666638 140667980 + 0 NA intron (ENSMUSG00000030232.18, intron 8 of 8) protein_coding-intron (ENSMUSG00000030232.18, intron 8 of 8) 30571 ENSMUSG00000030232.18 ENSMUSG00000030232 ENSMUST00000160772 Aebp2 protein_coding Interval_158106 chr8 78770788 78772118 + 0 NA intron (ENSMUSG00000112190.1, intron 2 of 7) unitary_pseudogene-intron (ENSMUSG00000112190.1, intron 2 of 7) 3092 ENSMUSG00000112190.1 ENSMUSG00000112190 ENSMUST00000218647 Gm47209 unitary_pseudogene Interval_73217 chr17 35633461 35634269 + 0 NA intron (ENSMUSG00000090509.2, intron 3 of 3) protein_coding-intron (ENSMUSG00000090509.2, intron 3 of 3) -7255 ENSMUSG00000090588.2 ENSMUSG00000090588 ENSMUST00000173759 Gm9573 protein_coding Interval_1706 chr1 31748814 31749099 + 0 NA Intergenic Intergenic 12899 ENSMUSG00000082159.2 ENSMUSG00000082159 ENSMUST00000117896 Gm7910 processed_pseudogene Interval_12092 chr1 189692356 189692735 + 0 NA Intergenic Intergenic 7217 ENSMUSG00000103374.1 ENSMUSG00000103374 ENSMUST00000193510 Gm37239 processed_pseudogene Interval_25051 chr11 43525059 43525611 + 0 NA Intergenic Intergenic -3911 ENSMUSG00000044707.7 ENSMUSG00000044707 ENSMUST00000152153 Ccnjl protein_coding Interval_154962 chr8 25321432 25321792 + 0 NA Intergenic Intergenic -15342 ENSMUSG00000110140.1 ENSMUSG00000110140 ENSMUST00000209774 5430421F17Rik lincRNA Interval_54479 chr14 70142067 70143137 + 0 NA intron (ENSMUSG00000033712.6, intron 11 of 20) protein_coding-intron (ENSMUSG00000033712.6, intron 11 of 20) -1506 ENSMUSG00000033712.6 ENSMUSG00000033712 ENSMUST00000035612 Ccar2 protein_coding Interval_142033 chr6 136644361 136644589 + 0 NA intron (ENSMUSG00000030214.7, intron 2 of 8) protein_coding-intron (ENSMUSG00000030214.7, intron 2 of 10) 17398 ENSMUSG00000030214.7 ENSMUSG00000030214 ENSMUST00000133911 Plbd1 protein_coding Interval_15900 chr10 59082500 59083040 + 0 NA intron (ENSMUSG00000037990.18, intron 1 of 3) protein_coding-intron (ENSMUSG00000037990.18, intron 2 of 5) -112929 ENSMUSG00000088744.1 ENSMUSG00000088744 ENSMUST00000158119 Gm23223 snoRNA Interval_36968 chr12 55759973 55760489 + 0 NA intron (ENSMUSG00000021027.17, intron 11 of 39) protein_coding-intron (ENSMUSG00000021027.17, intron 11 of 40) 56296 ENSMUSG00000112393.1 ENSMUSG00000112393 ENSMUST00000217762 Gm48655 TEC Interval_101847 chr3 9986579 9988259 + 0 NA Intergenic Intergenic -15418 ENSMUSG00000103698.1 ENSMUSG00000103698 ENSMUST00000192578 Gm17877 processed_pseudogene Interval_10542 chr1 171638878 171639091 + 0 NA intron (ENSMUSG00000038179.13, intron 3 of 4) protein_coding-intron (ENSMUSG00000038179.13, intron 3 of 6) 2916 ENSMUSG00000098316.1 ENSMUSG00000098316 ENSMUST00000183842 Mir7683 miRNA Interval_73733 chr17 43060657 43061270 + 0 NA intron (ENSMUSG00000023915.5, intron 3 of 5) protein_coding-intron (ENSMUSG00000023915.5, intron 3 of 5) 44395 ENSMUSG00000023915.5 ENSMUSG00000023915 ENSMUST00000233482 Tnfrsf21 protein_coding Interval_48793 chr13 103327338 103328031 + 0 NA intron (ENSMUSG00000034751.17, intron 1 of 3) protein_coding-intron (ENSMUSG00000034751.17, intron 1 of 4) -28568 ENSMUSG00000047643.5 ENSMUSG00000047643 ENSMUST00000052030 Gm5454 processed_pseudogene Interval_27553 chr11 68644462 68645195 + 0 NA Intergenic Intergenic -47326 ENSMUSG00000020900.15 ENSMUSG00000020900 ENSMUST00000139059 Myh10 protein_coding Interval_5442 chr1 88806728 88808364 + 0 NA Intergenic Intergenic 52656 ENSMUSG00000097398.2 ENSMUSG00000097398 ENSMUST00000180596 Platr5 lincRNA Interval_18922 chr10 93173515 93173809 + 0 NA intron (ENSMUSG00000020015.10, intron 1 of 6) protein_coding-intron (ENSMUSG00000020015.10, intron 1 of 16) 10877 ENSMUSG00000089214.1 ENSMUSG00000089214 ENSMUST00000158589 Mir1931 miRNA Interval_142759 chr6 145400156 145400432 + 0 NA intron (ENSMUSG00000054966.13, intron 6 of 10) protein_coding-intron (ENSMUSG00000054966.13, intron 7 of 8) 12697 ENSMUSG00000087204.1 ENSMUSG00000087204 ENSMUST00000148424 1700073E17Rik transcribed_processed_pseudogene Interval_115833 chr4 105152006 105153059 + 0 NA Intergenic Intergenic -4815 ENSMUSG00000028517.8 ENSMUSG00000028517 ENSMUST00000064139 Plpp3 protein_coding Interval_24972 chr11 42275446 42276019 + 0 NA Intergenic Intergenic 45319 ENSMUSG00000020428.13 ENSMUSG00000020428 ENSMUST00000109286 Gabra6 protein_coding Interval_117039 chr4 119165800 119166108 + 0 NA Intergenic Intergenic 7902 ENSMUSG00000045268.13 ENSMUSG00000045268 ENSMUST00000154226 Zfp691 protein_coding Interval_151645 chr7 125655628 125655993 + 0 NA promoter-TSS (ENSMUSG00000032777.9) protein_coding-promoter-TSS (ENSMUSG00000032777.9) 13182 ENSMUSG00000032777.9 ENSMUSG00000032777 ENSMUST00000206127 Gtf3c1 protein_coding Interval_72256 chr17 28837094 28837553 + 0 NA TTS (ENSMUSG00000063952.16) protein_coding-TTS (ENSMUSG00000063952.16) -14566 ENSMUSG00000117301.1 ENSMUSG00000117301 ENSMUST00000233498 Gm35883 antisense Interval_132166 chr5 143045443 143045696 + 0 NA intron (ENSMUSG00000045078.12, intron 13 of 16) protein_coding-intron (ENSMUSG00000045078.12, intron 13 of 16) 4474 ENSMUSG00000106543.1 ENSMUSG00000106543 ENSMUST00000199336 Gm43378 sense_intronic Interval_124929 chr5 60978760 60979612 + 0 NA Intergenic Intergenic -33537 ENSMUSG00000105903.1 ENSMUSG00000105903 ENSMUST00000199566 1700014F14Rik lincRNA Interval_23151 chr11 20189887 20190222 + 0 NA Intergenic Intergenic 4681 ENSMUSG00000084442.1 ENSMUSG00000084442 ENSMUST00000122493 Gm26253 snRNA Interval_154949 chr8 25230049 25230392 + 0 NA intron (ENSMUSG00000065954.11, intron 1 of 4) protein_coding-intron (ENSMUSG00000065954.11, intron 1 of 2) -28771 ENSMUSG00000065954.11 ENSMUSG00000065954 ENSMUST00000211218 Tacc1 protein_coding Interval_106347 chr3 95531170 95531551 + 0 NA TTS (ENSMUSG00000083822.1) processed_pseudogene-TTS (ENSMUSG00000083822.1) 942 ENSMUSG00000083822.1 ENSMUSG00000083822 ENSMUST00000121058 Hmgb1-ps5 processed_pseudogene Interval_58741 chr15 37627811 37628370 + 0 NA intron (ENSMUSG00000051359.15, intron 2 of 2) protein_coding-intron (ENSMUSG00000051359.15, intron 2 of 6) -24556 ENSMUSG00000080425.1 ENSMUSG00000080425 ENSMUST00000116775 Gm24833 snRNA Interval_36142 chr12 36302055 36303380 + 0 NA Intergenic Intergenic -11422 ENSMUSG00000036169.6 ENSMUSG00000036169 ENSMUST00000041407 Sostdc1 protein_coding Interval_90187 chr2 28905358 28905574 + 0 NA exon (ENSMUSG00000026806.15, exon 20 of 20) protein_coding-exon (ENSMUSG00000026806.15, exon 20 of 20) 10039 ENSMUSG00000026805.14 ENSMUSG00000026805 ENSMUST00000174027 Barhl1 protein_coding Interval_133087 chr5 149730053 149730942 + 0 NA intron (ENSMUSG00000051950.10, intron 7 of 14) protein_coding-intron (ENSMUSG00000051950.10, intron 7 of 14) -9035 ENSMUSG00000051950.10 ENSMUSG00000051950 ENSMUST00000201088 B3glct protein_coding Interval_78124 chr18 8819282 8819607 + 0 NA Intergenic Intergenic -108791 ENSMUSG00000103172.1 ENSMUSG00000103172 ENSMUST00000195097 Gm37148 TEC Interval_104802 chr3 73856756 73856960 + 0 NA Intergenic Intergenic -76188 ENSMUSG00000102859.1 ENSMUSG00000102859 ENSMUST00000194185 Gm8625 processed_pseudogene Interval_102279 chr3 20384711 20384914 + 0 NA Intergenic Intergenic 7173 ENSMUSG00000103573.1 ENSMUSG00000103573 ENSMUST00000191874 Gm18426 processed_pseudogene Interval_79270 chr18 29029646 29030246 + 0 NA Intergenic Intergenic 157730 ENSMUSG00000117473.1 ENSMUSG00000117473 ENSMUST00000234160 Gm33948 lincRNA Interval_127808 chr5 107960840 107962044 + 0 NA intron (ENSMUSG00000029270.10, intron 1 of 4) protein_coding-intron (ENSMUSG00000029270.10, intron 1 of 4) 11556 ENSMUSG00000029270.10 ENSMUSG00000029270 ENSMUST00000153172 Dipk1a protein_coding Interval_116693 chr4 116693790 116694376 + 0 NA TTS (ENSMUSG00000028691.12) protein_coding-TTS (ENSMUSG00000028691.12) 8484 ENSMUSG00000028691.12 ENSMUSG00000028691 ENSMUST00000030454 Prdx1 protein_coding Interval_45475 chr13 55329300 55331301 + 0 NA promoter-TSS (ENSMUSG00000021485.14) protein_coding-promoter-TSS (ENSMUSG00000021485.14) -477 ENSMUSG00000021485.14 ENSMUSG00000021485 ENSMUST00000141644 Mxd3 protein_coding Interval_16567 chr10 64010335 64010631 + 0 NA intron (ENSMUSG00000042846.8, intron 1 of 1) protein_coding-intron (ENSMUSG00000060843.11, intron 6 of 16) 79764 ENSMUSG00000042846.8 ENSMUSG00000042846 ENSMUST00000133588 Lrrtm3 protein_coding Interval_146001 chr7 43006307 43007318 + 0 NA Intergenic Intergenic -11953 ENSMUSG00000091528.9 ENSMUSG00000091528 ENSMUST00000166914 Vmn2r126 protein_coding Interval_137943 chr6 83582613 83583500 + 0 NA intron (ENSMUSG00000108660.1, intron 6 of 7) antisense-intron (ENSMUSG00000108660.1, intron 6 of 7) 9087 ENSMUSG00000088031.1 ENSMUSG00000088031 ENSMUST00000157406 Gm24990 misc_RNA Interval_72012 chr17 27574535 27574775 + 0 NA Intergenic Intergenic -8989 ENSMUSG00000062753.14 ENSMUSG00000062753 ENSMUST00000138728 AI413582 protein_coding Interval_173417 chrX 92800615 92801349 + 0 NA Intergenic Intergenic -81469 ENSMUSG00000088663.1 ENSMUSG00000088663 ENSMUST00000158038 Gm25332 snRNA Interval_7262 chr1 128303739 128304991 + 0 NA exon (ENSMUSG00000026354.8, exon 7 of 17) protein_coding-exon (ENSMUSG00000026354.8, exon 7 of 17) -12101 ENSMUSG00000026354.8 ENSMUSG00000026354 ENSMUST00000162067 Lct protein_coding Interval_78323 chr18 11972368 11973431 + 0 NA intron (ENSMUSG00000049411.15, intron 9 of 9) protein_coding-intron (ENSMUSG00000049411.15, intron 9 of 9) 59768 ENSMUSG00000117430.1 ENSMUSG00000117430 ENSMUST00000234828 Gm49968 TEC Interval_121700 chr5 5485425 5486768 + 0 NA Intergenic Intergenic -7016 ENSMUSG00000079666.8 ENSMUSG00000079666 ENSMUST00000156282 1700015F17Rik protein_coding Interval_84907 chr19 18699753 18700946 + 0 NA intron (ENSMUSG00000024726.10, intron 6 of 7) protein_coding-intron (ENSMUSG00000024726.10, intron 6 of 7) -12844 ENSMUSG00000047044.7 ENSMUSG00000047044 ENSMUST00000055792 D030056L22Rik protein_coding Interval_89567 chr2 22888501 22888803 + 0 NA Intergenic Intergenic -6943 ENSMUSG00000026784.14 ENSMUSG00000026784 ENSMUST00000149229 Pdss1 protein_coding Interval_43883 chr13 37837171 37839235 + 0 NA intron (ENSMUSG00000039087.17, intron 1 of 9) protein_coding-intron (ENSMUSG00000039087.17, intron 1 of 9) -38413 ENSMUSG00000114370.1 ENSMUSG00000114370 ENSMUST00000224624 Gm46411 antisense Interval_20199 chr10 115664463 115664862 + 0 NA Intergenic Intergenic -64334 ENSMUSG00000112099.1 ENSMUSG00000112099 ENSMUST00000219787 Gm8960 processed_pseudogene Interval_155489 chr8 33881642 33881883 + 0 NA intron (ENSMUSG00000031586.17, intron 1 of 8) protein_coding-intron (ENSMUSG00000031586.17, intron 1 of 7) 3985 ENSMUSG00000098166.1 ENSMUSG00000098166 ENSMUST00000182843 Gm26978 sense_intronic Interval_137277 chr6 70980580 70981605 + 0 NA Intergenic Intergenic 24561 ENSMUSG00000055874.6 ENSMUSG00000055874 ENSMUST00000069634 Foxi3 protein_coding Interval_27170 chr11 63687599 63688498 + 0 NA Intergenic Intergenic -87125 ENSMUSG00000082256.1 ENSMUSG00000082256 ENSMUST00000119770 Gm12287 processed_pseudogene Interval_42716 chr13 18495686 18495968 + 0 NA Intergenic Intergenic -98141 ENSMUSG00000009734.18 ENSMUSG00000009734 ENSMUST00000222900 Pou6f2 protein_coding Interval_79116 chr18 24682765 24683070 + 0 NA intron (ENSMUSG00000039616.10, intron 8 of 11) protein_coding-intron (ENSMUSG00000039616.10, intron 8 of 14) 3365 ENSMUSG00000084472.1 ENSMUSG00000084472 ENSMUST00000122523 n-R5s23 rRNA Interval_170567 chr9 108739732 108740281 + 0 NA exon (ENSMUSG00000032601.13, exon 1 of 1) protein_coding-exon (ENSMUSG00000032601.13, exon 1 of 1) -1148 ENSMUSG00000065674.1 ENSMUSG00000065674 ENSMUST00000083740 Gm24259 snRNA Interval_117551 chr4 124633229 124633512 + 0 NA intron (ENSMUSG00000098760.1, intron 1 of 1) antisense-intron (ENSMUSG00000098760.1, intron 1 of 1) -23437 ENSMUSG00000090125.3 ENSMUSG00000090125 ENSMUST00000053491 Pou3f1 protein_coding Interval_84678 chr19 14973299 14973769 + 0 NA Intergenic Intergenic -12768 ENSMUSG00000063586.1 ENSMUSG00000063586 ENSMUST00000072982 Gm5513 processed_pseudogene Interval_136614 chr6 56699188 56699390 + 0 NA Intergenic Intergenic 5421 ENSMUSG00000091625.8 ENSMUSG00000091625 ENSMUST00000176595 Lsm5 protein_coding Interval_17583 chr10 77981656 77981983 + 0 NA promoter-TSS (ENSMUSG00000020284.16) protein_coding-promoter-TSS (ENSMUSG00000020284.16) 3165 ENSMUSG00000020284.16 ENSMUSG00000020284 ENSMUST00000129277 Cfap410 protein_coding Interval_87202 chr19 46843697 46844114 + 0 NA intron (ENSMUSG00000064105.13, intron 1 of 1) protein_coding-intron (ENSMUSG00000064105.13, intron 1 of 6) -21755 ENSMUSG00000064105.13 ENSMUSG00000064105 ENSMUST00000235671 Cnnm2 protein_coding Interval_102971 chr3 33906803 33907047 + 0 NA Intergenic Intergenic -9341 ENSMUSG00000105475.1 ENSMUSG00000105475 ENSMUST00000197426 4930431L21Rik lincRNA Interval_170419 chr9 107795103 107795826 + 0 NA intron (ENSMUSG00000032582.14, intron 7 of 7) protein_coding-intron (ENSMUSG00000032582.14, intron 8 of 20) 24548 ENSMUSG00000102670.1 ENSMUSG00000102670 ENSMUST00000193842 Gm37436 TEC Interval_100366 chr2 168667762 168668681 + 0 NA intron (ENSMUSG00000027546.15, intron 13 of 27) protein_coding-intron (ENSMUSG00000027546.15, intron 13 of 27) -27462 ENSMUSG00000105496.1 ENSMUSG00000105496 ENSMUST00000200215 Mir7004 miRNA Interval_73335 chr17 36265615 36266138 + 0 NA intron (ENSMUSG00000045409.16, intron 2 of 4) protein_coding-intron (ENSMUSG00000045409.16, intron 3 of 6) 2819 ENSMUSG00000045409.16 ENSMUSG00000045409 ENSMUST00000172832 Trim39 protein_coding Interval_44976 chr13 51099969 51101627 + 0 NA promoter-TSS (ENSMUSG00000021395.11) protein_coding-promoter-TSS (ENSMUSG00000021395.11) -33521 ENSMUSG00000021395.11 ENSMUSG00000021395 ENSMUST00000223152 Spin1 protein_coding Interval_51986 chr14 34446567 34447050 + 0 NA intron (ENSMUSG00000021796.15, intron 4 of 4) protein_coding-intron (ENSMUSG00000021796.15, intron 3 of 12) -54907 ENSMUSG00000090779.1 ENSMUSG00000090779 ENSMUST00000171248 Gm17110 antisense Interval_115148 chr4 91493570 91493798 + 0 NA Intergenic Intergenic -120321 ENSMUSG00000098563.1 ENSMUSG00000098563 ENSMUST00000183406 Mir6402 miRNA Interval_1102 chr1 15752293 15753033 + 0 NA Intergenic Intergenic -5169 ENSMUSG00000077377.1 ENSMUSG00000077377 ENSMUST00000104189 Gm25168 snoRNA Interval_151352 chr7 121532360 121532666 + 0 NA intron (ENSMUSG00000108811.1, intron 2 of 5) antisense-intron (ENSMUSG00000108811.1, intron 2 of 5) 57323 ENSMUSG00000108811.1 ENSMUSG00000108811 ENSMUST00000206244 4933432K03Rik antisense Interval_43882 chr13 37835425 37836442 + 0 NA intron (ENSMUSG00000039087.17, intron 1 of 9) protein_coding-intron (ENSMUSG00000039087.17, intron 1 of 9) -36143 ENSMUSG00000114370.1 ENSMUSG00000114370 ENSMUST00000224624 Gm46411 antisense Interval_145096 chr7 29994966 29995244 + 0 NA intron (ENSMUSG00000074221.12, intron 4 of 7) protein_coding-intron (ENSMUSG00000074221.12, intron 2 of 7) 9849 ENSMUSG00000074221.12 ENSMUSG00000074221 ENSMUST00000177931 Zfp568 protein_coding Interval_13768 chr10 21918310 21918711 + 0 NA intron (ENSMUSG00000019970.15, intron 1 of 13) protein_coding-intron (ENSMUSG00000019970.15, intron 1 of 13) -39618 ENSMUSG00000080607.1 ENSMUSG00000080607 ENSMUST00000116957 Gm23839 snoRNA Interval_3077 chr1 52937635 52940190 + 0 NA intron (ENSMUSG00000043629.12, intron 1 of 1) protein_coding-intron (ENSMUSG00000043629.12, intron 1 of 1) -64914 ENSMUSG00000089802.1 ENSMUSG00000089802 ENSMUST00000162523 Gm16107 processed_pseudogene Interval_131165 chr5 135537441 135538774 + 0 NA intron (ENSMUSG00000039959.13, intron 1 of 1) protein_coding-intron (ENSMUSG00000039959.13, intron 1 of 30) 25462 ENSMUSG00000070464.1 ENSMUSG00000070464 ENSMUST00000094226 Ccl26 protein_coding Interval_76545 chr17 80929495 80929942 + 0 NA intron (ENSMUSG00000112121.1, intron 4 of 5) lincRNA-intron (ENSMUSG00000112121.1, intron 4 of 5) 8996 ENSMUSG00000071040.2 ENSMUSG00000071040 ENSMUST00000095195 Gm9386 processed_pseudogene Interval_57258 chr15 8180509 8181842 + 0 NA intron (ENSMUSG00000039801.7, intron 9 of 52) protein_coding-intron (ENSMUSG00000039801.7, intron 9 of 52) 30092 ENSMUSG00000022142.8 ENSMUSG00000022142 ENSMUST00000230647 Nup155 protein_coding Interval_82664 chr18 75766854 75767128 + 0 NA promoter-TSS (ENSMUSG00000118164.1) processed_pseudogene-promoter-TSS (ENSMUSG00000118164.1) -152 ENSMUSG00000118164.1 ENSMUSG00000118164 ENSMUST00000237826 Gm20570 processed_pseudogene Interval_76943 chr17 85089683 85091253 + 0 NA promoter-TSS (ENSMUSG00000024127.15) protein_coding-promoter-TSS (ENSMUSG00000024127.15) -138 ENSMUSG00000071037.6 ENSMUSG00000071037 ENSMUST00000234501 Camkmt protein_coding Interval_71029 chr17 17274500 17275530 + 0 NA Intergenic Intergenic 12665 ENSMUSG00000116802.1 ENSMUSG00000116802 ENSMUST00000231376 Gm5165 lincRNA Interval_80919 chr18 50176909 50177428 + 0 NA intron (ENSMUSG00000024507.6, intron 17 of 23) protein_coding-intron (ENSMUSG00000024507.6, intron 17 of 23) 31976 ENSMUSG00000117714.1 ENSMUSG00000117714 ENSMUST00000238008 Gm50439 processed_pseudogene Interval_82353 chr18 72073524 72073780 + 0 NA intron (ENSMUSG00000060534.16, intron 1 of 1) protein_coding-intron (ENSMUSG00000060534.16, intron 1 of 28) 277389 ENSMUSG00000060534.16 ENSMUSG00000060534 ENSMUST00000126030 Dcc protein_coding Interval_128889 chr5 115906742 115907883 + 0 NA promoter-TSS (ENSMUSG00000029516.19) protein_coding-promoter-TSS (ENSMUSG00000029516.19) 4882 ENSMUSG00000107263.1 ENSMUSG00000107263 ENSMUST00000201457 Gm42471 TEC Interval_48813 chr13 103609357 103609676 + 0 NA intron (ENSMUSG00000114206.1, intron 1 of 3) lincRNA-intron (ENSMUSG00000114206.1, intron 1 of 3) -32410 ENSMUSG00000096642.1 ENSMUSG00000096642 ENSMUST00000179897 Gm24870 snRNA Interval_8757 chr1 150495867 150497893 + 0 NA Intergenic Intergenic -31282 ENSMUSG00000006014.16 ENSMUSG00000006014 ENSMUST00000159035 Prg4 protein_coding Interval_152756 chr7 137253385 137254452 + 0 NA intron (ENSMUSG00000010476.14, intron 6 of 15) protein_coding-intron (ENSMUSG00000010476.14, intron 6 of 15) 19235 ENSMUSG00000109722.1 ENSMUSG00000109722 ENSMUST00000211070 Gm10578 antisense Interval_17498 chr10 77251323 77253305 + 0 NA Intergenic Intergenic 6909 ENSMUSG00000078444.3 ENSMUSG00000078444 ENSMUST00000105408 Gm10941 bidirectional_promoter_lncRNA Interval_87779 chr19 55806893 55807695 + 0 NA intron (ENSMUSG00000024985.20, intron 4 of 14) protein_coding-intron (ENSMUSG00000024985.20, intron 3 of 11) -34378 ENSMUSG00000099746.1 ENSMUSG00000099746 ENSMUST00000190974 Ppnr sense_intronic Interval_137832 chr6 82821688 82822173 + 0 NA Intergenic Intergenic -9504 ENSMUSG00000108015.3 ENSMUSG00000108015 ENSMUST00000203038 Gm32591 lincRNA Interval_149488 chr7 99057827 99058097 + 0 NA intron (ENSMUSG00000035354.9, intron 3 of 3) protein_coding-intron (ENSMUSG00000035354.9, intron 6 of 14) -32270 ENSMUSG00000109492.1 ENSMUSG00000109492 ENSMUST00000208990 Gm33882 processed_pseudogene Interval_61203 chr15 79946007 79947075 + 0 NA intron (ENSMUSG00000053411.16, intron 1 of 5) protein_coding-intron (ENSMUSG00000053411.16, intron 1 of 5) -12711 ENSMUSG00000053411.16 ENSMUSG00000053411 ENSMUST00000177061 Cbx7 protein_coding Interval_47619 chr13 90186068 90186432 + 0 NA intron (ENSMUSG00000114541.1, intron 3 of 5) lincRNA-intron (ENSMUSG00000114541.1, intron 3 of 5) 29096 ENSMUSG00000103228.1 ENSMUSG00000103228 ENSMUST00000191637 Gm37727 TEC Interval_78284 chr18 11586590 11587837 + 0 NA Intergenic Intergenic -37702 ENSMUSG00000117535.1 ENSMUSG00000117535 ENSMUST00000234170 Gm50067 processed_pseudogene Interval_72287 chr17 28984824 28985251 + 0 NA intron (ENSMUSG00000024006.17, intron 2 of 6) protein_coding-intron (ENSMUSG00000024006.17, intron 5 of 13) 5111 ENSMUSG00000084632.1 ENSMUSG00000084632 ENSMUST00000122683 Gm23887 snRNA Interval_71637 chr17 25023581 25024013 + 0 NA intron (ENSMUSG00000024169.16, intron 3 of 28) protein_coding-intron (ENSMUSG00000024169.16, intron 3 of 29) -8009 ENSMUSG00000038002.9 ENSMUSG00000038002 ENSMUST00000233169 Cramp1l protein_coding Interval_102050 chr3 16168419 16170063 + 0 NA Intergenic Intergenic -13995 ENSMUSG00000047213.14 ENSMUSG00000047213 ENSMUST00000108346 Ythdf3 protein_coding Interval_53966 chr14 63872866 63873786 + 0 NA intron (ENSMUSG00000021958.5, intron 5 of 6) protein_coding-intron (ENSMUSG00000021958.5, intron 5 of 6) -26443 ENSMUSG00000021958.5 ENSMUSG00000021958 ENSMUST00000225564 Pinx1 protein_coding Interval_168925 chr9 88993347 88993888 + 0 NA Intergenic Intergenic 8426 ENSMUSG00000103336.1 ENSMUSG00000103336 ENSMUST00000195301 Gm37993 TEC Interval_79643 chr18 34217131 34217369 + 0 NA intron (ENSMUSG00000073607.2, intron 1 of 1) transcribed_processed_pseudogene-intron (ENSMUSG00000073607.2, intron 1 of 1) -3674 ENSMUSG00000005871.15 ENSMUSG00000005871 ENSMUST00000167136 Apc protein_coding Interval_121863 chr5 8959527 8960835 + 0 NA TTS (ENSMUSG00000042476.12) protein_coding-TTS (ENSMUSG00000042476.12) -11767 ENSMUSG00000078183.3 ENSMUSG00000078183 ENSMUST00000120584 Gm15610 processed_pseudogene Interval_174448 chrX 152557182 152557955 + 0 NA intron (ENSMUSG00000091863.2, intron 1 of 1) protein_coding-intron (ENSMUSG00000091863.2, intron 1 of 1) -7644 ENSMUSG00000081993.1 ENSMUSG00000081993 ENSMUST00000118211 Gm8475 processed_pseudogene Interval_105338 chr3 85113434 85113970 + 0 NA intron (ENSMUSG00000102805.5, intron 3 of 9) protein_coding-intron (ENSMUSG00000102805.5, intron 3 of 9) 38994 ENSMUSG00000104290.1 ENSMUSG00000104290 ENSMUST00000194445 Gm38041 processed_pseudogene Interval_96299 chr2 121376535 121378255 + 0 NA exon (ENSMUSG00000033498.14, exon 4 of 29) protein_coding-exon (ENSMUSG00000033498.14, exon 4 of 29) -2606 ENSMUSG00000033498.14 ENSMUSG00000033498 ENSMUST00000149219 Strc protein_coding Interval_158752 chr8 85872376 85873097 + 0 NA intron (ENSMUSG00000036879.15, intron 2 of 4) protein_coding-intron (ENSMUSG00000036879.15, intron 2 of 31) -18299 ENSMUSG00000090043.1 ENSMUSG00000090043 ENSMUST00000160428 Gm16167 processed_pseudogene Interval_96169 chr2 120237739 120238297 + 0 NA intron (ENSMUSG00000050211.14, intron 1 of 5) protein_coding-intron (ENSMUSG00000050211.14, intron 1 of 19) 7090 ENSMUSG00000050211.14 ENSMUSG00000050211 ENSMUST00000152263 Pla2g4e protein_coding Interval_86505 chr19 41244586 41244953 + 0 NA intron (ENSMUSG00000025016.11, intron 5 of 14) protein_coding-intron (ENSMUSG00000025016.11, intron 5 of 13) 19211 ENSMUSG00000025016.11 ENSMUSG00000025016 ENSMUST00000237871 Tm9sf3 protein_coding Interval_108299 chr3 123437858 123438181 + 0 NA Intergenic Intergenic -8894 ENSMUSG00000027978.9 ENSMUSG00000027978 ENSMUST00000029603 Prss12 protein_coding Interval_159959 chr8 105421910 105422228 + 0 NA intron (ENSMUSG00000054320.16, intron 1 of 13) protein_coding-intron (ENSMUSG00000054320.16, intron 1 of 13) 8441 ENSMUSG00000054320.16 ENSMUSG00000054320 ENSMUST00000216457 Lrrc36 protein_coding Interval_163617 chr9 22570902 22572316 + 0 NA intron (ENSMUSG00000035919.16, intron 3 of 5) protein_coding-intron (ENSMUSG00000035919.16, intron 6 of 21) 59152 ENSMUSG00000035919.16 ENSMUSG00000035919 ENSMUST00000124076 Bbs9 protein_coding Interval_88756 chr2 10323501 10323746 + 0 NA Intergenic Intergenic -48825 ENSMUSG00000061186.15 ENSMUSG00000061186 ENSMUST00000041105 Sfmbt2 protein_coding Interval_83973 chr19 5877814 5878476 + 0 NA promoter-TSS (ENSMUSG00000024818.15) protein_coding-promoter-TSS (ENSMUSG00000024818.15) 284 ENSMUSG00000024818.15 ENSMUSG00000024818 ENSMUST00000141362 Slc25a45 protein_coding Interval_172310 chrX 12857895 12858742 + 0 NA Intergenic Intergenic 12044 ENSMUSG00000077858.1 ENSMUSG00000077858 ENSMUST00000104666 Gm25063 miRNA Interval_77588 chr17 92569402 92569612 + 0 NA Intergenic Intergenic 31019 ENSMUSG00000117354.1 ENSMUSG00000117354 ENSMUST00000234942 Gm49995 processed_pseudogene Interval_113874 chr4 59502025 59502770 + 0 NA intron (ENSMUSG00000028382.15, intron 1 of 3) protein_coding-intron (ENSMUSG00000028382.15, intron 4 of 13) -30350 ENSMUSG00000080831.1 ENSMUSG00000080831 ENSMUST00000119529 Gm12529 processed_pseudogene Interval_89690 chr2 24642267 24642761 + 0 NA intron (ENSMUSG00000004113.18, intron 32 of 46) protein_coding-intron (ENSMUSG00000004113.18, intron 32 of 46) -10490 ENSMUSG00000004113.18 ENSMUSG00000004113 ENSMUST00000124183 Cacna1b protein_coding Interval_157335 chr8 69616761 69617686 + 0 NA intron (ENSMUSG00000060427.15, intron 2 of 4) protein_coding-intron (ENSMUSG00000060427.15, intron 1 of 3) -3160 ENSMUSG00000060427.15 ENSMUSG00000060427 ENSMUST00000140522 Zfp868 protein_coding Interval_74854 chr17 56878896 56879095 + 0 NA intron (ENSMUSG00000024209.9, intron 3 of 13) protein_coding-intron (ENSMUSG00000024209.9, intron 3 of 13) 3492 ENSMUSG00000024209.9 ENSMUSG00000024209 ENSMUST00000125425 Acsbg3 protein_coding Interval_108401 chr3 126649107 126649314 + 0 NA intron (ENSMUSG00000053819.16, intron 2 of 20) protein_coding-intron (ENSMUSG00000053819.16, intron 2 of 18) 4749 ENSMUSG00000105586.1 ENSMUSG00000105586 ENSMUST00000199979 Gm43009 TEC Interval_18471 chr10 86434135 86435707 + 0 NA intron (ENSMUSG00000059602.14, intron 3 of 8) protein_coding-intron (ENSMUSG00000059602.14, intron 3 of 13) 56976 ENSMUSG00000059602.14 ENSMUSG00000059602 ENSMUST00000139197 Syn3 protein_coding Interval_52426 chr14 46108928 46109895 + 0 NA Intergenic Intergenic 25383 ENSMUSG00000044285.8 ENSMUSG00000044285 ENSMUST00000111388 Ubb-ps transcribed_processed_pseudogene Interval_169633 chr9 99568132 99569278 + 0 NA promoter-TSS (ENSMUSG00000032468.11) protein_coding-promoter-TSS (ENSMUSG00000032468.11) -42 ENSMUSG00000032468.11 ENSMUSG00000032468 ENSMUST00000191370 Armc8 protein_coding Interval_52922 chr14 52076936 52077503 + 0 NA intron (ENSMUSG00000060373.15, intron 6 of 8) protein_coding-intron (ENSMUSG00000060373.15, intron 6 of 8) -5292 ENSMUSG00000115541.1 ENSMUSG00000115541 ENSMUST00000227288 Gm49258 processed_pseudogene Interval_59849 chr15 59777124 59778025 + 0 NA Intergenic Intergenic 17385 ENSMUSG00000115426.1 ENSMUSG00000115426 ENSMUST00000228865 Gm19510 lincRNA Interval_3186 chr1 54570033 54570604 + 0 NA Intergenic Intergenic 3615 ENSMUSG00000101130.1 ENSMUSG00000101130 ENSMUST00000185933 Gm19637 processed_pseudogene Interval_109609 chr3 145117823 145119174 + 0 NA promoter-TSS (ENSMUSG00000028256.16) protein_coding-promoter-TSS (ENSMUSG00000028256.16) -19392 ENSMUSG00000036960.10 ENSMUSG00000036960 ENSMUST00000197121 Clca2 protein_coding Interval_147035 chr7 58915485 58917299 + 0 NA Intergenic Intergenic -10172 ENSMUSG00000109261.1 ENSMUSG00000109261 ENSMUST00000208614 Gm44938 processed_pseudogene Interval_374 chr1 4709522 4709795 + 0 NA Intergenic Intergenic 13721 ENSMUSG00000088000.1 ENSMUSG00000088000 ENSMUST00000157375 Gm25493 snRNA Interval_115317 chr4 96088800 96090249 + 0 NA Intergenic Intergenic -16818 ENSMUSG00000083880.1 ENSMUSG00000083880 ENSMUST00000120275 Hspe1-ps6 processed_pseudogene Interval_169626 chr9 99528046 99528479 + 0 NA intron (ENSMUSG00000032468.11, intron 6 of 10) protein_coding-intron (ENSMUSG00000032468.11, intron 7 of 21) 40401 ENSMUSG00000032468.11 ENSMUSG00000032468 ENSMUST00000191370 Armc8 protein_coding Interval_115765 chr4 103541177 103541390 + 0 NA intron (ENSMUSG00000087482.1, intron 2 of 2) processed_transcript-intron (ENSMUSG00000087482.1, intron 2 of 2) 3444 ENSMUSG00000081584.1 ENSMUSG00000081584 ENSMUST00000120606 Gm12716 processed_pseudogene Interval_90893 chr2 33300282 33300538 + 0 NA intron (ENSMUSG00000038831.16, intron 3 of 16) protein_coding-intron (ENSMUSG00000038831.16, intron 3 of 16) -22761 ENSMUSG00000082844.1 ENSMUSG00000082844 ENSMUST00000120467 Gm13537 processed_pseudogene Interval_107811 chr3 115682712 115682942 + 0 NA Intergenic Intergenic 32245 ENSMUSG00000045092.8 ENSMUSG00000045092 ENSMUST00000055676 S1pr1 protein_coding Interval_110968 chr4 10953028 10954216 + 0 NA Intergenic Intergenic 7014 ENSMUSG00000081715.1 ENSMUSG00000081715 ENSMUST00000117608 Rps11-ps3 processed_pseudogene Interval_172415 chrX 18383994 18384582 + 0 NA Intergenic Intergenic 40490 ENSMUSG00000081271.1 ENSMUSG00000081271 ENSMUST00000120179 Gm14883 processed_pseudogene Interval_61025 chr15 78834851 78835196 + 0 NA Intergenic Intergenic -7601 ENSMUSG00000049521.2 ENSMUSG00000049521 ENSMUST00000059619 Cdc42ep1 protein_coding Interval_131307 chr5 136303199 136304048 + 0 NA intron (ENSMUSG00000029705.17, intron 20 of 23) protein_coding-intron (ENSMUSG00000029705.17, intron 20 of 23) 28627 ENSMUSG00000086220.1 ENSMUSG00000086220 ENSMUST00000148082 Gm16599 antisense Interval_11018 chr1 178448691 178449413 + 0 NA intron (ENSMUSG00000026495.8, intron 1 of 5) protein_coding-intron (ENSMUSG00000026495.8, intron 2 of 6) 42967 ENSMUSG00000026495.8 ENSMUSG00000026495 ENSMUST00000192905 Efcab2 protein_coding Interval_55192 chr14 79235285 79235662 + 0 NA intron (ENSMUSG00000071262.10, intron 1 of 1) protein_coding-intron (ENSMUSG00000071262.10, intron 1 of 2) 11896 ENSMUSG00000071262.10 ENSMUSG00000071262 ENSMUST00000162937 Zfp957 protein_coding Interval_48152 chr13 96700578 96701893 + 0 NA Intergenic Intergenic -23112 ENSMUSG00000113351.1 ENSMUSG00000113351 ENSMUST00000221591 Gm48575 processed_pseudogene Interval_3384 chr1 57773999 57775774 + 0 NA promoter-TSS (ENSMUSG00000038305.15) protein_coding-promoter-TSS (ENSMUSG00000038305.15) 724 ENSMUSG00000038305.15 ENSMUSG00000038305 ENSMUST00000164353 Spats2l protein_coding Interval_76920 chr17 84984513 84984703 + 0 NA intron (ENSMUSG00000061130.13, intron 2 of 7) protein_coding-intron (ENSMUSG00000061130.13, intron 1 of 5) -9072 ENSMUSG00000061130.13 ENSMUSG00000061130 ENSMUST00000234851 Ppm1b protein_coding Interval_140269 chr6 115938868 115939094 + 0 NA exon (ENSMUSG00000030324.8, exon 5 of 5) protein_coding-exon (ENSMUSG00000030324.8, exon 5 of 5) -2455 ENSMUSG00000107548.1 ENSMUSG00000107548 ENSMUST00000203894 Gm43866 TEC Interval_85191 chr19 23584884 23585584 + 0 NA intron (ENSMUSG00000033053.4, intron 4 of 5) protein_coding-intron (ENSMUSG00000033053.4, intron 4 of 5) -20664 ENSMUSG00000117944.1 ENSMUSG00000117944 ENSMUST00000237913 Gm50422 processed_pseudogene Interval_157478 chr8 70618492 70619522 + 0 NA intron (ENSMUSG00000049988.5, intron 2 of 2) protein_coding-intron (ENSMUSG00000049988.5, intron 2 of 2) 2852 ENSMUSG00000049988.5 ENSMUSG00000049988 ENSMUST00000052437 Lrrc25 protein_coding Interval_72945 chr17 33709796 33710611 + 0 NA intron (ENSMUSG00000079557.11, intron 1 of 6) protein_coding-intron (ENSMUSG00000079557.11, intron 1 of 5) 8442 ENSMUSG00000079557.11 ENSMUSG00000079557 ENSMUST00000173392 Marchf2 protein_coding Interval_112039 chr4 33416354 33416596 + 0 NA intron (ENSMUSG00000028274.17, intron 13 of 15) protein_coding-intron (ENSMUSG00000028274.17, intron 13 of 15) -21606 ENSMUSG00000098310.1 ENSMUSG00000098310 ENSMUST00000183962 Mir8118 miRNA Interval_55883 chr14 101776162 101777423 + 0 NA intron (ENSMUSG00000033060.16, intron 1 of 30) protein_coding-intron (ENSMUSG00000033060.16, intron 1 of 30) -46977 ENSMUSG00000053821.4 ENSMUSG00000053821 ENSMUST00000066461 Gm9922 bidirectional_promoter_lncRNA Interval_104545 chr3 67572850 67573807 + 0 NA promoter-TSS (ENSMUSG00000077459.1) snoRNA-promoter-TSS (ENSMUSG00000077459.1) -37 ENSMUSG00000077459.1 ENSMUSG00000077459 ENSMUST00000104271 Gm25919 snoRNA Interval_19037 chr10 93974113 93974653 + 0 NA intron (ENSMUSG00000036099.16, intron 1 of 2) protein_coding-intron (ENSMUSG00000036099.16, intron 10 of 11) -10520 ENSMUSG00000065607.1 ENSMUSG00000065607 ENSMUST00000083673 Mir331 miRNA Interval_40587 chr12 105862627 105862895 + 0 NA Intergenic Intergenic -1501 ENSMUSG00000113537.1 ENSMUSG00000113537 ENSMUST00000221840 Gm48807 lincRNA Interval_5290 chr1 87270308 87271535 + 0 NA intron (ENSMUSG00000026255.15, intron 1 of 4) protein_coding-intron (ENSMUSG00000026255.15, intron 1 of 3) -5747 ENSMUSG00000089821.1 ENSMUSG00000089821 ENSMUST00000138844 Efhd1os antisense Interval_146477 chr7 46226193 46226843 + 0 NA intron (ENSMUSG00000030838.20, intron 4 of 6) protein_coding-intron (ENSMUSG00000030838.20, intron 4 of 26) 4065 ENSMUSG00000030838.20 ENSMUSG00000030838 ENSMUST00000238793 Ush1c protein_coding Interval_35189 chr12 17936710 17937077 + 0 NA intron (ENSMUSG00000113536.1, intron 2 of 2) transcribed_unprocessed_pseudogene-intron (ENSMUSG00000113536.1, intron 1 of 1) 3729 ENSMUSG00000113536.1 ENSMUSG00000113536 ENSMUST00000221062 Gm49327 transcribed_unprocessed_pseudogene Interval_12499 chr1 194443134 194444085 + 0 NA Intergenic Intergenic -174609 ENSMUSG00000026640.12 ENSMUSG00000026640 ENSMUST00000124785 Plxna2 protein_coding Interval_79252 chr18 27684324 27685768 + 0 NA Intergenic Intergenic 21521 ENSMUSG00000117529.1 ENSMUSG00000117529 ENSMUST00000234608 Gm49978 lincRNA Interval_72790 chr17 32194036 32194300 + 0 NA Intergenic Intergenic -4619 ENSMUSG00000037577.13 ENSMUSG00000037577 ENSMUST00000162117 Ephx3 protein_coding Interval_172684 chrX 42139350 42140133 + 0 NA Intergenic Intergenic -9018 ENSMUSG00000082324.1 ENSMUSG00000082324 ENSMUST00000117575 Gm14615 processed_pseudogene Interval_154890 chr8 24835527 24836273 + 0 NA TTS (ENSMUSG00000037437.18) protein_coding-TTS (ENSMUSG00000037437.18) -11834 ENSMUSG00000031554.18 ENSMUSG00000031554 ENSMUST00000118419 Adam5 protein_coding Interval_17264 chr10 75429143 75429978 + 0 NA intron (ENSMUSG00000033427.14, intron 1 of 1) protein_coding-intron (ENSMUSG00000033427.14, intron 5 of 9) -13060 ENSMUSG00000084622.1 ENSMUSG00000084622 ENSMUST00000122673 Gm25545 misc_RNA Interval_148551 chr7 82436594 82436905 + 0 NA intron (ENSMUSG00000070469.12, intron 2 of 4) protein_coding-intron (ENSMUSG00000070469.12, intron 4 of 29) 28275 ENSMUSG00000070469.12 ENSMUSG00000070469 ENSMUST00000172784 Adamtsl3 protein_coding Interval_158548 chr8 84390906 84392083 + 0 NA intron (ENSMUSG00000034656.18, intron 1 of 5) protein_coding-intron (ENSMUSG00000034656.18, intron 1 of 5) -10913 ENSMUSG00000064392.1 ENSMUSG00000064392 ENSMUST00000082458 Gm23626 snoRNA Interval_38610 chr12 80524361 80526126 + 0 NA intron (ENSMUSG00000021130.8, intron 2 of 15) protein_coding-intron (ENSMUSG00000021130.8, intron 1 of 14) -6327 ENSMUSG00000097801.1 ENSMUSG00000097801 ENSMUST00000181852 Gm26777 bidirectional_promoter_lncRNA Interval_79704 chr18 34623732 34625518 + 0 NA promoter-TSS (ENSMUSG00000003778.14) protein_coding-promoter-TSS (ENSMUSG00000003778.14) -24 ENSMUSG00000003778.14 ENSMUSG00000003778 ENSMUST00000127159 Brd8 protein_coding Interval_4775 chr1 78557103 78557317 + 0 NA Intergenic Intergenic 45398 ENSMUSG00000012187.13 ENSMUSG00000012187 ENSMUST00000125458 Mogat1 protein_coding Interval_79019 chr18 23986560 23987353 + 0 NA intron (ENSMUSG00000024274.10, intron 1 of 4) transcribed_unprocessed_pseudogene-intron (ENSMUSG00000024274.10, intron 1 of 4) 270 ENSMUSG00000024274.10 ENSMUSG00000024274 ENSMUST00000224144 Zscan30 transcribed_unprocessed_pseudogene Interval_78821 chr18 20811637 20812450 + 0 NA Intergenic Intergenic 32549 ENSMUSG00000088549.1 ENSMUSG00000088549 ENSMUST00000157924 Gm24959 snRNA Interval_79548 chr18 33560935 33561174 + 0 NA Intergenic Intergenic -15414 ENSMUSG00000117689.1 ENSMUSG00000117689 ENSMUST00000237469 Gm50392 processed_pseudogene Interval_37515 chr12 69500742 69502857 + 0 NA Intergenic Intergenic -26252 ENSMUSG00000113035.1 ENSMUSG00000113035 ENSMUST00000222980 5830428M24Rik processed_transcript Interval_69623 chr16 94680167 94681329 + 0 NA intron (ENSMUSG00000022897.15, intron 8 of 10) protein_coding-intron (ENSMUSG00000022897.15, intron 9 of 11) 33155 ENSMUSG00000116822.1 ENSMUSG00000116822 ENSMUST00000232250 Gm41504 TEC Interval_85902 chr19 32866679 32866937 + 0 NA Intergenic Intergenic 55583 ENSMUSG00000013663.7 ENSMUSG00000013663 ENSMUST00000154806 Pten protein_coding Interval_155094 chr8 26437694 26438024 + 0 NA promoter-TSS (ENSMUSG00000110383.1) lincRNA-promoter-TSS (ENSMUSG00000110383.1) -970 ENSMUSG00000110383.1 ENSMUSG00000110383 ENSMUST00000210430 Gm45580 lincRNA Interval_106047 chr3 91713364 91713762 + 0 NA Intergenic Intergenic 297302 ENSMUSG00000077085.1 ENSMUSG00000077085 ENSMUST00000103897 Gm23697 miRNA Interval_56350 chr14 117961598 117962900 + 0 NA intron (ENSMUSG00000058571.11, intron 8 of 9) protein_coding-intron (ENSMUSG00000058571.11, intron 7 of 8) -8402 ENSMUSG00000098648.1 ENSMUSG00000098648 ENSMUST00000183564 Mir6239 miRNA Interval_36106 chr12 35884893 35885763 + 0 NA Intergenic Intergenic -40294 ENSMUSG00000036231.5 ENSMUSG00000036231 ENSMUST00000154042 Agr3 protein_coding Interval_10656 chr1 172496036 172496554 + 0 NA TTS (ENSMUSG00000037995.15) protein_coding-TTS (ENSMUSG00000037995.15) -3950 ENSMUSG00000026547.15 ENSMUSG00000026547 ENSMUST00000111228 Tagln2 protein_coding Interval_41402 chr12 113397070 113397318 + 0 NA promoter-TSS (ENSMUSG00000102832.1) processed_pseudogene-promoter-TSS (ENSMUSG00000102832.1) 30 ENSMUSG00000103198.1 ENSMUSG00000103198 ENSMUST00000193368 Gm9136 processed_pseudogene Interval_49115 chr13 108166418 108166890 + 0 NA intron (ENSMUSG00000021694.18, intron 3 of 11) protein_coding-intron (ENSMUSG00000021694.18, intron 3 of 11) 7900 ENSMUSG00000021694.18 ENSMUSG00000021694 ENSMUST00000123138 Ercc8 protein_coding Interval_113455 chr4 55100690 55102079 + 0 NA Intergenic Intergenic -15179 ENSMUSG00000082704.1 ENSMUSG00000082704 ENSMUST00000120116 Gm12515 processed_pseudogene Interval_15298 chr10 44308307 44309005 + 0 NA intron (ENSMUSG00000038160.7, intron 5 of 7) protein_coding-intron (ENSMUSG00000038160.7, intron 5 of 7) 40241 ENSMUSG00000038160.7 ENSMUSG00000038160 ENSMUST00000217412 Atg5 protein_coding Interval_124971 chr5 62797758 62798067 + 0 NA Intergenic Intergenic -13762 ENSMUSG00000090326.2 ENSMUSG00000090326 ENSMUST00000170704 Dthd1 protein_coding Interval_113992 chr4 62314037 62314895 + 0 NA intron (ENSMUSG00000066151.12, intron 13 of 20) protein_coding-intron (ENSMUSG00000066151.12, intron 19 of 27) 24029 ENSMUSG00000066151.12 ENSMUSG00000066151 ENSMUST00000131977 Fkbp15 protein_coding Interval_172711 chrX 46669546 46670289 + 0 NA intron (ENSMUSG00000101233.1, intron 1 of 3) lincRNA-intron (ENSMUSG00000101233.1, intron 1 of 3) 104182 ENSMUSG00000101233.1 ENSMUSG00000101233 ENSMUST00000186570 Gm29242 lincRNA Interval_24766 chr11 37039250 37040009 + 0 NA intron (ENSMUSG00000049336.16, intron 2 of 3) protein_coding-intron (ENSMUSG00000049336.16, intron 2 of 30) -95463 ENSMUSG00000049336.16 ENSMUSG00000049336 ENSMUST00000157030 Tenm2 protein_coding Interval_98210 chr2 149922390 149922617 + 0 NA intron (ENSMUSG00000074736.10, intron 2 of 3) protein_coding-intron (ENSMUSG00000074736.10, intron 3 of 4) -90861 ENSMUSG00000074737.2 ENSMUSG00000074737 ENSMUST00000099264 C530025M09Rik antisense Interval_79817 chr18 35279505 35280900 + 0 NA intron (ENSMUSG00000024357.10, intron 2 of 2) protein_coding-intron (ENSMUSG00000024357.10, intron 7 of 9) 16173 ENSMUSG00000117876.1 ENSMUSG00000117876 ENSMUST00000236119 Gm50146 antisense Interval_12792 chr10 5480172 5481030 + 0 NA intron (ENSMUSG00000096054.3, intron 2 of 145) protein_coding-intron (ENSMUSG00000096054.3, intron 2 of 31) -113174 ENSMUSG00000046916.9 ENSMUSG00000046916 ENSMUST00000051809 Myct1 protein_coding Interval_123175 chr5 30366573 30367007 + 0 NA TTS (ENSMUSG00000062372.13) protein_coding-TTS (ENSMUSG00000062372.13) 744 ENSMUSG00000106311.1 ENSMUSG00000106311 ENSMUST00000200001 Gm43755 sense_intronic Interval_144521 chr7 25658555 25659736 + 0 NA promoter-TSS (ENSMUSG00000060376.7) protein_coding-promoter-TSS (ENSMUSG00000060376.7) -46 ENSMUSG00000061286.7 ENSMUSG00000061286 ENSMUST00000205614 Exosc5 protein_coding Interval_157060 chr8 64877288 64878230 + 0 NA Intergenic Intergenic -27835 ENSMUSG00000031605.8 ENSMUSG00000031605 ENSMUST00000209544 Klhl2 protein_coding Interval_142119 chr6 137380355 137381091 + 0 NA intron (ENSMUSG00000030223.14, intron 5 of 25) protein_coding-intron (ENSMUSG00000030223.14, intron 5 of 26) -30036 ENSMUSG00000030223.14 ENSMUSG00000030223 ENSMUST00000203127 Ptpro protein_coding Interval_48752 chr13 102744596 102745754 + 0 NA intron (ENSMUSG00000034751.17, intron 25 of 27) protein_coding-intron (ENSMUSG00000034751.17, intron 25 of 27) -15080 ENSMUSG00000091906.2 ENSMUSG00000091906 ENSMUST00000167834 1700099I09Rik antisense Interval_100942 chr2 173534570 173535569 + 0 NA Intergenic Intergenic 12483 ENSMUSG00000027518.3 ENSMUSG00000027518 ENSMUST00000029023 1700021F07Rik protein_coding Interval_86374 chr19 39187317 39188049 + 0 NA TTS (ENSMUSG00000067229.3) protein_coding-TTS (ENSMUSG00000067229.3) -41571 ENSMUSG00000093610.7 ENSMUSG00000093610 ENSMUST00000175649 Cyp2c53-ps transcribed_unprocessed_pseudogene Interval_3777 chr1 63045126 63045344 + 0 NA intron (ENSMUSG00000040865.15, intron 9 of 12) protein_coding-intron (ENSMUSG00000040865.15, intron 9 of 12) 7021 ENSMUSG00000081617.1 ENSMUSG00000081617 ENSMUST00000122045 Rps13-ps7 processed_pseudogene Interval_6510 chr1 113574473 113574991 + 0 NA Intergenic Intergenic -8749 ENSMUSG00000102105.1 ENSMUSG00000102105 ENSMUST00000186856 Gm17946 processed_pseudogene Interval_21933 chr11 5275101 5275536 + 0 NA exon (ENSMUSG00000118486.1, exon 2 of 2) unitary_pseudogene-exon (ENSMUSG00000118486.1, exon 2 of 2) 1233 ENSMUSG00000118486.1 ENSMUSG00000118486 ENSMUST00000238466 Gm30172 unitary_pseudogene Interval_136757 chr6 59168686 59169854 + 0 NA Intergenic Intergenic 23983 ENSMUSG00000107987.1 ENSMUSG00000107987 ENSMUST00000204516 Gm43905 processed_pseudogene Interval_137310 chr6 71234649 71235833 + 0 NA intron (ENSMUSG00000055027.17, intron 4 of 8) protein_coding-intron (ENSMUSG00000055027.17, intron 5 of 9) -18367 ENSMUSG00000055027.17 ENSMUSG00000055027 ENSMUST00000173297 Smyd1 protein_coding Interval_121224 chr4 154170101 154171558 + 0 NA promoter-TSS (ENSMUSG00000057751.14) protein_coding-promoter-TSS (ENSMUSG00000057751.14) -10663 ENSMUSG00000029030.14 ENSMUSG00000029030 ENSMUST00000133165 Tprgl protein_coding Interval_84650 chr19 14662959 14664648 + 0 NA Intergenic Intergenic 5136 ENSMUSG00000103488.1 ENSMUSG00000103488 ENSMUST00000193515 Gm37997 TEC Interval_135606 chr6 41494028 41494243 + 0 NA TTS (ENSMUSG00000104513.1) processed_pseudogene-TTS (ENSMUSG00000104513.1) 832 ENSMUSG00000104513.1 ENSMUSG00000104513 ENSMUST00000195856 Gm29813 processed_pseudogene Interval_139160 chr6 96562091 96562322 + 0 NA intron (ENSMUSG00000059187.12, intron 3 of 4) protein_coding-intron (ENSMUSG00000059187.12, intron 2 of 3) -1342 ENSMUSG00000077598.1 ENSMUSG00000077598 ENSMUST00000104410 Gm26011 snRNA Interval_14892 chr10 40895725 40896009 + 0 NA intron (ENSMUSG00000019831.14, intron 1 of 8) protein_coding-intron (ENSMUSG00000019831.14, intron 1 of 8) 12040 ENSMUSG00000019831.14 ENSMUSG00000019831 ENSMUST00000105509 Wasf1 protein_coding Interval_53765 chr14 61603153 61603725 + 0 NA TTS (ENSMUSG00000097589.9) processed_transcript-TTS (ENSMUSG00000097589.9) -4018 ENSMUSG00000046168.9 ENSMUSG00000046168 ENSMUST00000051184 Kcnrg protein_coding Interval_46642 chr13 67862487 67864569 + 0 NA exon (ENSMUSG00000064063.6, exon 1 of 1) protein_coding-exon (ENSMUSG00000064063.6, exon 1 of 1) 202 ENSMUSG00000064063.6 ENSMUSG00000064063 ENSMUST00000078471 BC048507 protein_coding Interval_37260 chr12 63483743 63484824 + 0 NA Intergenic Intergenic -87580 ENSMUSG00000112972.1 ENSMUSG00000112972 ENSMUST00000220626 Gm48417 processed_pseudogene Interval_131506 chr5 137621722 137622061 + 0 NA exon (ENSMUSG00000089984.7, exon 4 of 10) protein_coding-exon (ENSMUSG00000089984.7, exon 4 of 10) 6264 ENSMUSG00000081228.1 ENSMUSG00000081228 ENSMUST00000117679 Gm16089 processed_pseudogene Interval_77991 chr18 6481254 6481920 + 0 NA intron (ENSMUSG00000024240.13, intron 1 of 13) protein_coding-intron (ENSMUSG00000024240.13, intron 1 of 13) -8568 ENSMUSG00000101320.1 ENSMUSG00000101320 ENSMUST00000189675 Gm28529 antisense Interval_15566 chr10 51582157 51582485 + 0 NA Intergenic Intergenic 8196 ENSMUSG00000019909.4 ENSMUSG00000019909 ENSMUST00000020064 Fam162b protein_coding Interval_147196 chr7 64349216 64349643 + 0 NA exon (ENSMUSG00000033458.17, exon 12 of 14) protein_coding-exon (ENSMUSG00000033458.17, exon 12 of 14) -3465 ENSMUSG00000092187.1 ENSMUSG00000092187 ENSMUST00000173374 Gm20457 antisense Interval_61296 chr15 80648507 80650093 + 0 NA TTS (ENSMUSG00000042351.9) protein_coding-TTS (ENSMUSG00000042351.9) 3227 ENSMUSG00000098631.1 ENSMUSG00000098631 ENSMUST00000183708 Mir6957 miRNA Interval_139838 chr6 110645098 110646999 + 0 NA promoter-TSS (ENSMUSG00000092448.1) antisense-promoter-TSS (ENSMUSG00000092448.1) -132 ENSMUSG00000092448.1 ENSMUSG00000092448 ENSMUST00000173609 Gm20387 antisense Interval_15165 chr10 43020824 43022753 + 0 NA exon (ENSMUSG00000038248.8, exon 6 of 7) protein_coding-exon (ENSMUSG00000038248.8, exon 6 of 7) -13205 ENSMUSG00000111171.1 ENSMUSG00000111171 ENSMUST00000213469 Gm47815 antisense Interval_29010 chr11 79902382 79903337 + 0 NA Intergenic Intergenic -3122 ENSMUSG00000082252.1 ENSMUSG00000082252 ENSMUST00000122438 Gm11204 processed_pseudogene Interval_88297 chr2 3463436 3463676 + 0 NA exon (ENSMUSG00000026648.18, exon 16 of 16) protein_coding-exon (ENSMUSG00000026648.18, exon 16 of 16) -5057 ENSMUSG00000085043.1 ENSMUSG00000085043 ENSMUST00000149932 Gm13184 antisense Interval_139848 chr6 111057956 111058651 + 0 NA intron (ENSMUSG00000056755.13, intron 3 of 9) protein_coding-intron (ENSMUSG00000056755.13, intron 2 of 10) 319953 ENSMUSG00000092603.1 ENSMUSG00000092603 ENSMUST00000174010 Gm20386 processed_pseudogene Interval_144135 chr7 19585998 19586778 + 0 NA promoter-TSS (ENSMUSG00000061028.7) protein_coding-promoter-TSS (ENSMUSG00000061028.7) -530 ENSMUSG00000061028.7 ENSMUSG00000061028 ENSMUST00000207325 Clasrp protein_coding Interval_15288 chr10 44112850 44113421 + 0 NA intron (ENSMUSG00000019866.15, intron 1 of 21) protein_coding-intron (ENSMUSG00000019866.15, intron 1 of 21) -40335 ENSMUSG00000111122.1 ENSMUSG00000111122 ENSMUST00000213468 Gm5949 processed_pseudogene Interval_95189 chr2 104630021 104630396 + 0 NA intron (ENSMUSG00000027176.8, intron 3 of 20) protein_coding-intron (ENSMUSG00000027176.8, intron 3 of 20) 39590 ENSMUSG00000027176.8 ENSMUSG00000027176 ENSMUST00000126539 Cstf3 protein_coding Interval_9483 chr1 157552049 157553346 + 0 NA intron (ENSMUSG00000026589.14, intron 9 of 15) protein_coding-intron (ENSMUSG00000026589.14, intron 14 of 26) 14646 ENSMUSG00000026589.14 ENSMUSG00000026589 ENSMUST00000155665 Sec16b protein_coding Interval_114352 chr4 74222028 74222906 + 0 NA Intergenic Intergenic -5730 ENSMUSG00000083767.1 ENSMUSG00000083767 ENSMUST00000118689 Gm11405 processed_pseudogene Interval_42069 chr13 7450888 7451946 + 0 NA intron (ENSMUSG00000113225.1, intron 1 of 3) lincRNA-intron (ENSMUSG00000113225.1, intron 1 of 3) 4908 ENSMUSG00000113225.1 ENSMUSG00000113225 ENSMUST00000221383 Gm36074 lincRNA Interval_42788 chr13 19544420 19544672 + 0 NA Intergenic Intergenic 18559 ENSMUSG00000113251.1 ENSMUSG00000113251 ENSMUST00000221671 Gm18363 processed_pseudogene Interval_43237 chr13 26383763 26384076 + 0 NA Intergenic Intergenic -23893 ENSMUSG00000114660.1 ENSMUSG00000114660 ENSMUST00000223914 Gm47881 TEC Interval_120580 chr4 149503017 149505529 + 0 NA Intergenic Intergenic 3640 ENSMUSG00000083811.1 ENSMUSG00000083811 ENSMUST00000122237 Gm13071 processed_pseudogene Interval_160498 chr8 110020468 110020675 + 0 NA Intergenic Intergenic -6247 ENSMUSG00000110561.1 ENSMUSG00000110561 ENSMUST00000212348 Gm45888 processed_pseudogene Interval_97430 chr2 136140228 136140638 + 0 NA TTS (ENSMUSG00000085383.1) antisense-TTS (ENSMUSG00000085383.1) 3427 ENSMUSG00000085383.1 ENSMUSG00000085383 ENSMUST00000137802 Gm14218 antisense Interval_78843 chr18 20936854 20937071 + 0 NA Intergenic Intergenic -24510 ENSMUSG00000033107.6 ENSMUSG00000033107 ENSMUST00000234316 Rnf125 protein_coding Interval_95051 chr2 103484407 103485781 + 0 NA promoter-TSS (ENSMUSG00000027187.10) protein_coding-promoter-TSS (ENSMUSG00000027187.10) 31 ENSMUSG00000027187.10 ENSMUSG00000027187 ENSMUST00000111168 Cat protein_coding Interval_72597 chr17 30900720 30902393 + 0 NA promoter-TSS (ENSMUSG00000024027.8) protein_coding-promoter-TSS (ENSMUSG00000024027.8) -303 ENSMUSG00000024027.8 ENSMUSG00000024027 ENSMUST00000236038 Glp1r protein_coding Interval_87176 chr19 46621542 46624784 + 0 NA promoter-TSS (ENSMUSG00000047731.17) protein_coding-promoter-TSS (ENSMUSG00000047731.17) 24039 ENSMUSG00000047731.17 ENSMUSG00000047731 ENSMUST00000111855 Wbp1l protein_coding Interval_161978 chr8 124235446 124236243 + 0 NA intron (ENSMUSG00000089704.9, intron 1 of 4) protein_coding-intron (ENSMUSG00000089704.9, intron 1 of 15) -59522 ENSMUSG00000089704.9 ENSMUSG00000089704 ENSMUST00000147911 Galnt2 protein_coding Interval_107364 chr3 106700813 106701581 + 0 NA intron (ENSMUSG00000056260.15, intron 1 of 2) protein_coding-intron (ENSMUSG00000056260.15, intron 1 of 2) 16199 ENSMUSG00000056260.15 ENSMUSG00000056260 ENSMUST00000150888 Lrif1 protein_coding Interval_171566 chr9 119234471 119235007 + 0 NA intron (ENSMUSG00000070280.13, intron 1 of 10) protein_coding-intron (ENSMUSG00000070280.13, intron 1 of 10) -3047 ENSMUSG00000092212.3 ENSMUSG00000092212 ENSMUST00000173185 Slc22a13b polymorphic_pseudogene Interval_54780 chr14 75010890 75011148 + 0 NA Intergenic Intergenic -25603 ENSMUSG00000034959.8 ENSMUSG00000034959 ENSMUST00000228689 Rubcnl protein_coding Interval_162612 chr9 6401503 6401790 + 0 NA Intergenic Intergenic -131800 ENSMUSG00000047619.5 ENSMUSG00000047619 ENSMUST00000051706 Ddi1 protein_coding Interval_12747 chr10 4674781 4675646 + 0 NA intron (ENSMUSG00000019768.16, intron 2 of 7) protein_coding-intron (ENSMUSG00000019768.16, intron 1 of 8) 63620 ENSMUSG00000019768.16 ENSMUSG00000019768 ENSMUST00000137012 Esr1 protein_coding Interval_63700 chr15 102934566 102935237 + 0 NA Intergenic Intergenic -1856 ENSMUSG00000050328.2 ENSMUSG00000050328 ENSMUST00000055562 Hoxc12 protein_coding Interval_20153 chr10 115296725 115297564 + 0 NA intron (ENSMUSG00000020132.10, intron 4 of 6) protein_coding-intron (ENSMUSG00000020132.10, intron 4 of 6) 18450 ENSMUSG00000020132.10 ENSMUSG00000020132 ENSMUST00000218831 Rab21 protein_coding Interval_72288 chr17 28986744 28988203 + 0 NA TTS (ENSMUSG00000024006.17) protein_coding-TTS (ENSMUSG00000024006.17) 2675 ENSMUSG00000084632.1 ENSMUSG00000084632 ENSMUST00000122683 Gm23887 snRNA Interval_60118 chr15 65882207 65883424 + 0 NA intron (ENSMUSG00000015001.17, intron 8 of 11) protein_coding-intron (ENSMUSG00000015001.17, intron 11 of 14) 18746 ENSMUSG00000015001.17 ENSMUSG00000015001 ENSMUST00000147776 Oc90 protein_coding Interval_37342 chr12 65243841 65244731 + 0 NA Intergenic Intergenic -7424 ENSMUSG00000113442.1 ENSMUSG00000113442 ENSMUST00000222221 Gm47973 processed_pseudogene Interval_129470 chr5 120424142 120424459 + 0 NA intron (ENSMUSG00000098649.2, intron 1 of 1) antisense-intron (ENSMUSG00000098649.2, intron 1 of 1) -7399 ENSMUSG00000029595.9 ENSMUSG00000029595 ENSMUST00000031591 Lhx5 protein_coding Interval_20191 chr10 115564543 115565191 + 0 NA intron (ENSMUSG00000020140.15, intron 1 of 16) protein_coding-intron (ENSMUSG00000020140.15, intron 1 of 17) -5119 ENSMUSG00000092210.1 ENSMUSG00000092210 ENSMUST00000173620 A930009A15Rik protein_coding Interval_22619 chr11 12323179 12323732 + 0 NA intron (ENSMUSG00000086584.8, intron 1 of 2) protein_coding-intron (ENSMUSG00000020173.17, intron 7 of 14) 1180 ENSMUSG00000086584.8 ENSMUSG00000086584 ENSMUST00000174550 Gm12002 antisense Interval_2511 chr1 39884893 39885748 + 0 NA Intergenic Intergenic -15859 ENSMUSG00000026074.15 ENSMUSG00000026074 ENSMUST00000191657 Map4k4 protein_coding Interval_76390 chr17 79847298 79848317 + 0 NA TTS (ENSMUSG00000059811.13) protein_coding-TTS (ENSMUSG00000059811.13) 8323 ENSMUSG00000059811.13 ENSMUSG00000059811 ENSMUST00000222243 Atl2 protein_coding Interval_11701 chr1 184776949 184778674 + 0 NA Intergenic Intergenic 31042 ENSMUSG00000026621.13 ENSMUSG00000026621 ENSMUST00000189492 Mtarc1 protein_coding Interval_8476 chr1 139795566 139795993 + 0 NA Intergenic Intergenic 8796 ENSMUSG00000095393.1 ENSMUSG00000095393 ENSMUST00000122621 Gm25619 snRNA Interval_166276 chr9 57969982 57970747 + 0 NA Intergenic Intergenic -27677 ENSMUSG00000097604.1 ENSMUSG00000097604 ENSMUST00000181289 Gm17322 lincRNA Interval_37339 chr12 65215995 65217276 + 0 NA Intergenic Intergenic -3134 ENSMUSG00000113233.1 ENSMUSG00000113233 ENSMUST00000222636 Gm31063 lincRNA Interval_124193 chr5 39673086 39674551 + 0 NA intron (ENSMUSG00000051022.7, intron 2 of 2) protein_coding-intron (ENSMUSG00000051022.7, intron 2 of 2) -29221 ENSMUSG00000051022.7 ENSMUSG00000051022 ENSMUST00000152057 Hs3st1 protein_coding Interval_59126 chr15 44389962 44390359 + 0 NA intron (ENSMUSG00000038736.10, intron 1 of 3) protein_coding-intron (ENSMUSG00000038736.10, intron 7 of 9) 26075 ENSMUSG00000077181.1 ENSMUSG00000077181 ENSMUST00000103993 Gm25093 snoRNA Interval_63497 chr15 101463273 101464384 + 0 NA promoter-TSS (ENSMUSG00000067615.4) protein_coding-promoter-TSS (ENSMUSG00000067615.4) -314 ENSMUSG00000067615.4 ENSMUSG00000067615 ENSMUST00000230541 Krt81 protein_coding Interval_98516 chr2 152922223 152922600 + 0 NA exon (ENSMUSG00000027470.9, exon 12 of 12) protein_coding-exon (ENSMUSG00000027470.9, exon 12 of 12) 10797 ENSMUSG00000074676.2 ENSMUSG00000074676 ENSMUST00000099200 Foxs1 protein_coding Interval_49024 chr13 107010067 107010440 + 0 NA intron (ENSMUSG00000021693.20, intron 1 of 21) protein_coding-intron (ENSMUSG00000021693.20, intron 1 of 19) -12300 ENSMUSG00000071181.2 ENSMUSG00000071181 ENSMUST00000224838 3830408C21Rik processed_transcript Interval_61108 chr15 79270416 79271360 + 0 NA intron (ENSMUSG00000018126.15, intron 6 of 6) protein_coding-intron (ENSMUSG00000018126.15, intron 6 of 13) 14605 ENSMUSG00000018126.15 ENSMUSG00000018126 ENSMUST00000170955 Baiap2l2 protein_coding Interval_88249 chr19 61140522 61141576 + 0 NA promoter-TSS (ENSMUSG00000074733.14) protein_coding-promoter-TSS (ENSMUSG00000074733.14) -232 ENSMUSG00000074733.14 ENSMUSG00000074733 ENSMUST00000148569 Zfp950 protein_coding Interval_92323 chr2 58747851 58748711 + 0 NA intron (ENSMUSG00000026839.17, intron 1 of 7) protein_coding-intron (ENSMUSG00000026839.17, intron 1 of 7) 7642 ENSMUSG00000080985.1 ENSMUSG00000080985 ENSMUST00000120476 Gm13559 processed_pseudogene Interval_34548 chr12 5018561 5018958 + 0 NA intron (ENSMUSG00000052812.5, intron 25 of 30) protein_coding-intron (ENSMUSG00000052812.5, intron 25 of 30) -19391 ENSMUSG00000087780.1 ENSMUSG00000087780 ENSMUST00000157155 Gm23167 snRNA Interval_154319 chr8 14365282 14366274 + 0 NA intron (ENSMUSG00000047495.15, intron 2 of 14) protein_coding-intron (ENSMUSG00000047495.15, intron 2 of 14) 15600 ENSMUSG00000106670.1 ENSMUSG00000106670 ENSMUST00000199602 Gm44347 miRNA Interval_15976 chr10 59814933 59815458 + 0 NA intron (ENSMUSG00000020111.15, intron 8 of 12) protein_coding-intron (ENSMUSG00000020111.15, intron 10 of 13) 2602 ENSMUSG00000094824.1 ENSMUSG00000094824 ENSMUST00000104610 Gm23803 snoRNA Interval_34121 chr11 120760418 120761520 + 0 NA Intergenic Intergenic -2674 ENSMUSG00000078249.5 ENSMUSG00000078249 ENSMUST00000178955 Hmga1b protein_coding Interval_68905 chr16 88288999 88290508 + 0 NA promoter-TSS (ENSMUSG00000022935.16) protein_coding-promoter-TSS (ENSMUSG00000022935.16) 111 ENSMUSG00000022935.16 ENSMUSG00000022935 ENSMUST00000210910 Grik1 protein_coding Interval_81424 chr18 60669712 60671438 + 0 NA Intergenic Intergenic -46313 ENSMUSG00000043079.17 ENSMUSG00000043079 ENSMUST00000139236 Synpo protein_coding Interval_67953 chr16 60638544 60639641 + 0 NA Intergenic Intergenic -2506 ENSMUSG00000116853.1 ENSMUSG00000116853 ENSMUST00000231440 Gm49609 processed_pseudogene Interval_7581 chr1 132315669 132316759 + 0 NA promoter-TSS (ENSMUSG00000009772.15) protein_coding-promoter-TSS (ENSMUSG00000009772.15) -11382 ENSMUSG00000009772.15 ENSMUSG00000009772 ENSMUST00000133246 Nuak2 protein_coding Interval_144104 chr7 19432260 19432744 + 0 NA intron (ENSMUSG00000030397.11, intron 13 of 17) protein_coding-intron (ENSMUSG00000030397.11, intron 13 of 16) -11085 ENSMUSG00000040705.2 ENSMUSG00000040705 ENSMUST00000047020 A930016O22Rik antisense Interval_109480 chr3 142833874 142834218 + 0 NA intron (ENSMUSG00000004591.16, intron 3 of 21) protein_coding-intron (ENSMUSG00000004591.16, intron 3 of 21) -30926 ENSMUSG00000004591.16 ENSMUSG00000004591 ENSMUST00000197529 Pkn2 protein_coding Interval_148657 chr7 83891561 83892706 + 0 NA promoter-TSS (ENSMUSG00000038503.15) protein_coding-promoter-TSS (ENSMUSG00000038503.15) -129 ENSMUSG00000108878.1 ENSMUSG00000108878 ENSMUST00000208403 Gm49493 TEC Interval_58534 chr15 35884472 35884753 + 0 NA exon (ENSMUSG00000037646.10, exon 52 of 62) protein_coding-exon (ENSMUSG00000037646.10, exon 52 of 62) 12890 ENSMUSG00000037646.10 ENSMUSG00000037646 ENSMUST00000228738 Vps13b protein_coding Interval_15284 chr10 44091032 44092072 + 0 NA intron (ENSMUSG00000019866.15, intron 1 of 21) protein_coding-intron (ENSMUSG00000019866.15, intron 1 of 21) -32774 ENSMUSG00000019866.15 ENSMUSG00000019866 ENSMUST00000239010 Crybg1 protein_coding Interval_83543 chr18 89056057 89056515 + 0 NA intron (ENSMUSG00000023066.10, intron 8 of 13) protein_coding-intron (ENSMUSG00000023066.10, intron 28 of 48) -45342 ENSMUSG00000023066.10 ENSMUSG00000023066 ENSMUST00000237196 Rttn protein_coding Interval_103221 chr3 37100163 37100472 + 0 NA intron (ENSMUSG00000027719.15, intron 2 of 4) protein_coding-intron (ENSMUSG00000027719.15, intron 10 of 11) -7857 ENSMUSG00000082878.1 ENSMUSG00000082878 ENSMUST00000120677 Gm12583 processed_pseudogene Interval_142035 chr6 136655642 136656452 + 0 NA intron (ENSMUSG00000030214.7, intron 1 of 8) protein_coding-intron (ENSMUSG00000030214.7, intron 1 of 10) 5826 ENSMUSG00000030214.7 ENSMUSG00000030214 ENSMUST00000133911 Plbd1 protein_coding Interval_39890 chr12 99376825 99377793 + 0 NA promoter-TSS (ENSMUSG00000113610.1) TEC-promoter-TSS (ENSMUSG00000113610.1) -61 ENSMUSG00000113610.1 ENSMUSG00000113610 ENSMUST00000223488 Gm47132 TEC Interval_153970 chr8 11564118 11565239 + 0 NA Intergenic Intergenic 9107 ENSMUSG00000045969.8 ENSMUSG00000045969 ENSMUST00000209565 Ing1 protein_coding Interval_68442 chr16 76788845 76789158 + 0 NA Intergenic Intergenic -24806 ENSMUSG00000109333.1 ENSMUSG00000109333 ENSMUST00000208527 Gm30790 lincRNA Interval_28689 chr11 77762880 77764164 + 0 NA intron (ENSMUSG00000000631.20, intron 1 of 41) protein_coding-intron (ENSMUSG00000000631.20, intron 1 of 1) 16481 ENSMUSG00000081924.1 ENSMUSG00000081924 ENSMUST00000117231 Gm11191 processed_pseudogene Interval_13219 chr10 13167530 13167923 + 0 NA intron (ENSMUSG00000019815.7, intron 3 of 4) protein_coding-intron (ENSMUSG00000019815.7, intron 4 of 5) 10297 ENSMUSG00000019815.7 ENSMUSG00000019815 ENSMUST00000219970 Zc2hc1b protein_coding Interval_125462 chr5 67346668 67348120 + 0 NA intron (ENSMUSG00000029221.15, intron 11 of 14) protein_coding-intron (ENSMUSG00000029221.15, intron 13 of 16) -18111 ENSMUSG00000107266.1 ENSMUSG00000107266 ENSMUST00000202864 Gm43698 lincRNA Interval_128550 chr5 113961590 113962110 + 0 NA intron (ENSMUSG00000042121.16, intron 5 of 14) protein_coding-intron (ENSMUSG00000042121.16, intron 4 of 13) 4906 ENSMUSG00000042121.16 ENSMUSG00000042121 ENSMUST00000162322 Ssh1 protein_coding Interval_153017 chr7 140890358 140890929 + 0 NA promoter-TSS (ENSMUSG00000083396.1) processed_pseudogene-promoter-TSS (ENSMUSG00000083396.1) -244 ENSMUSG00000083396.1 ENSMUSG00000083396 ENSMUST00000121585 Gm15542 processed_pseudogene Interval_121815 chr5 8448076 8448508 + 0 NA exon (ENSMUSG00000054099.11, exon 2 of 2) protein_coding-exon (ENSMUSG00000054099.11, exon 2 of 2) 25434 ENSMUSG00000054099.11 ENSMUSG00000054099 ENSMUST00000198119 Slc25a40 protein_coding Interval_120388 chr4 148269993 148272232 + 0 NA intron (ENSMUSG00000041544.11, intron 2 of 20) protein_coding-intron (ENSMUSG00000041544.11, intron 2 of 20) -10361 ENSMUSG00000041544.11 ENSMUSG00000041544 ENSMUST00000129734 Disp3 protein_coding Interval_123109 chr5 29754591 29754789 + 0 NA intron (ENSMUSG00000029131.14, intron 1 of 2) protein_coding-intron (ENSMUSG00000029131.14, intron 5 of 9) 18701 ENSMUSG00000029131.14 ENSMUSG00000029131 ENSMUST00000139126 Dnajb6 protein_coding Interval_88199 chr19 60603475 60603685 + 0 NA Intergenic Intergenic -7707 ENSMUSG00000117790.1 ENSMUSG00000117790 ENSMUST00000236155 Gm46652 lincRNA Interval_116251 chr4 109056064 109057209 + 0 NA exon (ENSMUSG00000053510.12, exon 24 of 31) protein_coding-exon (ENSMUSG00000053510.12, exon 24 of 31) 32430 ENSMUSG00000053510.12 ENSMUSG00000053510 ENSMUST00000125063 Nrd1 protein_coding Interval_103112 chr3 35474500 35474722 + 0 NA Intergenic Intergenic 60778 ENSMUSG00000106512.1 ENSMUSG00000106512 ENSMUST00000197222 Gm43078 TEC Interval_48860 chr13 104108826 104110454 + 0 NA promoter-TSS (ENSMUSG00000042743.13) protein_coding-promoter-TSS (ENSMUSG00000042743.13) -133 ENSMUSG00000042743.13 ENSMUSG00000042743 ENSMUST00000159574 Sgtb protein_coding Interval_63899 chr16 4447459 4448763 + 0 NA Intergenic Intergenic -27613 ENSMUSG00000005580.11 ENSMUSG00000005580 ENSMUST00000005719 Adcy9 protein_coding Interval_76800 chr17 84160951 84161831 + 0 NA Intergenic Intergenic -21550 ENSMUSG00000117485.1 ENSMUSG00000117485 ENSMUST00000234394 Gm19696 lincRNA Interval_38182 chr12 76228658 76231264 + 0 NA promoter-TSS (ENSMUSG00000021056.8) protein_coding-promoter-TSS (ENSMUSG00000021056.8) -497 ENSMUSG00000021056.8 ENSMUSG00000021056 ENSMUST00000219327 Tex21 protein_coding Interval_136151 chr6 51533407 51534079 + 0 NA intron (ENSMUSG00000038301.15, intron 1 of 6) protein_coding-intron (ENSMUSG00000038301.15, intron 1 of 6) -10780 ENSMUSG00000038301.15 ENSMUSG00000038301 ENSMUST00000149024 Snx10 protein_coding Interval_82979 chr18 80129103 80130361 + 0 NA exon (ENSMUSG00000053950.10, exon 4 of 4) protein_coding-exon (ENSMUSG00000053950.10, exon 4 of 4) 21750 ENSMUSG00000053950.10 ENSMUSG00000053950 ENSMUST00000066743 Adnp2 protein_coding Interval_47068 chr13 75171432 75172543 + 0 NA Intergenic Intergenic -27227 ENSMUSG00000113264.1 ENSMUSG00000113264 ENSMUST00000220533 Gm19095 processed_pseudogene Interval_86759 chr19 43665592 43665894 + 0 NA exon (ENSMUSG00000040414.8, exon 2 of 2) protein_coding-exon (ENSMUSG00000040414.8, exon 2 of 2) 1400 ENSMUSG00000040414.8 ENSMUSG00000040414 ENSMUST00000236433 Slc25a28 protein_coding Interval_86567 chr19 41756104 41756318 + 0 NA Intergenic Intergenic 11407 ENSMUSG00000088220.1 ENSMUSG00000088220 ENSMUST00000157595 Gm22601 misc_RNA Interval_52137 chr14 37016034 37016345 + 0 NA Intergenic Intergenic 8345 ENSMUSG00000114739.1 ENSMUSG00000114739 ENSMUST00000223806 Gm47885 processed_pseudogene Interval_17001 chr10 70364730 70365577 + 0 NA Intergenic Intergenic 26851 ENSMUSG00000112676.1 ENSMUSG00000112676 ENSMUST00000219977 Gm20108 processed_pseudogene Interval_136287 chr6 52544608 52545053 + 0 NA Intergenic Intergenic -15722 ENSMUSG00000107647.1 ENSMUSG00000107647 ENSMUST00000204075 Gm44445 TEC Interval_114120 chr4 63622290 63622687 + 0 NA promoter-TSS (ENSMUSG00000058935.14) protein_coding-promoter-TSS (ENSMUSG00000058935.14) -60 ENSMUSG00000058935.14 ENSMUSG00000058935 ENSMUST00000102862 Tex48 protein_coding Interval_9860 chr1 163315449 163315891 + 0 NA Intergenic Intergenic -6603 ENSMUSG00000103195.1 ENSMUSG00000103195 ENSMUST00000192190 Gm37644 TEC Interval_44549 chr13 45970694 45971445 + 0 NA Intergenic Intergenic 5718 ENSMUSG00000038152.4 ENSMUSG00000038152 ENSMUST00000189843 5033430I15Rik lincRNA Interval_9739 chr1 161554197 161554415 + 0 NA Intergenic Intergenic -1640 ENSMUSG00000089353.1 ENSMUSG00000089353 ENSMUST00000158728 Gm25488 rRNA Interval_156822 chr8 60858213 60860416 + 0 NA Intergenic Intergenic 13002 ENSMUSG00000110261.1 ENSMUSG00000110261 ENSMUST00000211229 Gm45485 processed_pseudogene Interval_136414 chr6 54253309 54255562 + 0 NA intron (ENSMUSG00000086946.7, intron 1 of 3) protein_coding-intron (ENSMUSG00000004633.17, intron 6 of 12) 476 ENSMUSG00000086946.7 ENSMUSG00000086946 ENSMUST00000144094 Gm15527 processed_transcript Interval_22008 chr11 5753627 5754216 + 0 NA intron (ENSMUSG00000049680.17, intron 1 of 6) protein_coding-intron (ENSMUSG00000049680.17, intron 1 of 4) -8229 ENSMUSG00000083844.8 ENSMUSG00000083844 ENSMUST00000135394 Ube2d-ps transcribed_unprocessed_pseudogene Interval_94446 chr2 91285864 91286404 + 0 NA intron (ENSMUSG00000040591.18, intron 4 of 8) protein_coding-intron (ENSMUSG00000040591.18, intron 4 of 8) 20800 ENSMUSG00000027255.14 ENSMUSG00000027255 ENSMUST00000127895 Arfgap2 protein_coding Interval_134572 chr6 29669576 29672351 + 0 NA Intergenic Intergenic -37065 ENSMUSG00000001763.14 ENSMUSG00000001763 ENSMUST00000137925 Tspan33 protein_coding Interval_154373 chr8 15071091 15071581 + 0 NA exon (ENSMUSG00000031461.4, exon 6 of 6) protein_coding-exon (ENSMUSG00000031461.4, exon 6 of 6) 25124 ENSMUSG00000109965.1 ENSMUSG00000109965 ENSMUST00000209938 Gm45274 lincRNA Interval_93314 chr2 71872700 71873933 + 0 NA promoter-TSS (ENSMUSG00000006494.11) protein_coding-promoter-TSS (ENSMUSG00000006494.11) -30 ENSMUSG00000006494.11 ENSMUSG00000006494 ENSMUST00000129427 Pdk1 protein_coding Interval_59765 chr15 59109436 59109837 + 0 NA Intergenic Intergenic -27631 ENSMUSG00000022353.10 ENSMUSG00000022353 ENSMUST00000227797 Mtss1 protein_coding Interval_18405 chr10 85570413 85572216 + 0 NA intron (ENSMUSG00000020042.15, intron 3 of 16) protein_coding-intron (ENSMUSG00000020042.15, intron 3 of 9) -73889 ENSMUSG00000020042.15 ENSMUSG00000020042 ENSMUST00000145433 Btbd11 protein_coding Interval_23764 chr11 26025994 26026188 + 0 NA intron (ENSMUSG00000032985.15, intron 1 of 5) protein_coding-intron (ENSMUSG00000032985.15, intron 1 of 6) -176149 ENSMUSG00000099015.1 ENSMUSG00000099015 ENSMUST00000185114 Mir6372 miRNA Interval_49710 chr13 114147992 114148776 + 0 NA exon (ENSMUSG00000114213.1, exon 4 of 14) antisense-exon (ENSMUSG00000114213.1, exon 4 of 14) 3208 ENSMUSG00000114213.1 ENSMUSG00000114213 ENSMUST00000225044 A430090L17Rik antisense Interval_130299 chr5 125499081 125499974 + 0 NA intron (ENSMUSG00000029482.4, intron 5 of 17) protein_coding-intron (ENSMUSG00000029482.4, intron 5 of 17) -15716 ENSMUSG00000029482.4 ENSMUSG00000029482 ENSMUST00000200286 Aacs protein_coding Interval_133173 chr5 150314798 150315016 + 0 NA intron (ENSMUSG00000056602.12, intron 2 of 60) protein_coding-intron (ENSMUSG00000056602.12, intron 2 of 60) -15466 ENSMUSG00000106719.1 ENSMUSG00000106719 ENSMUST00000201397 Gm42556 antisense Interval_68192 chr16 67495350 67495696 + 0 NA intron (ENSMUSG00000064115.13, intron 1 of 9) protein_coding-intron (ENSMUSG00000064115.13, intron 1 of 9) 97703 ENSMUSG00000082823.3 ENSMUSG00000082823 ENSMUST00000119911 Gm15828 processed_pseudogene Interval_710 chr1 10054662 10054906 + 0 NA intron (ENSMUSG00000056763.16, intron 3 of 3) protein_coding-intron (ENSMUSG00000056763.16, intron 3 of 29) 3160 ENSMUSG00000102356.1 ENSMUSG00000102356 ENSMUST00000194474 1700047N06Rik TEC Interval_102643 chr3 28827799 28828024 + 0 NA Intergenic Intergenic -13926 ENSMUSG00000104444.1 ENSMUSG00000104444 ENSMUST00000192940 Gm33051 antisense Interval_18456 chr10 86233356 86234925 + 0 NA intron (ENSMUSG00000059602.14, intron 6 of 8) protein_coding-intron (ENSMUSG00000059602.14, intron 6 of 13) -66414 ENSMUSG00000020044.13 ENSMUSG00000020044 ENSMUST00000132307 Timp3 protein_coding Interval_47835 chr13 93646140 93647137 + 0 NA Intergenic Intergenic -9072 ENSMUSG00000074768.6 ENSMUSG00000074768 ENSMUST00000124193 Bhmt protein_coding Interval_32619 chr11 109218058 109219029 + 0 NA Intergenic Intergenic 28422 ENSMUSG00000020599.13 ENSMUSG00000020599 ENSMUST00000106704 Rgs9 protein_coding Interval_122706 chr5 24798226 24798516 + 0 NA Intergenic Intergenic 22466 ENSMUSG00000089475.1 ENSMUSG00000089475 ENSMUST00000158850 Gm25363 misc_RNA Interval_23419 chr11 22506747 22507622 + 0 NA Intergenic Intergenic -4904 ENSMUSG00000049904.7 ENSMUSG00000049904 ENSMUST00000059319 Tmem17 protein_coding Interval_58848 chr15 38576276 38576628 + 0 NA exon (ENSMUSG00000115491.1, exon 1 of 1) processed_pseudogene-exon (ENSMUSG00000115491.1, exon 1 of 1) 197 ENSMUSG00000115491.1 ENSMUSG00000115491 ENSMUST00000227335 Siah1-ps2 processed_pseudogene Interval_69103 chr16 90689426 90690181 + 0 NA Intergenic Intergenic -12803 ENSMUSG00000116582.1 ENSMUSG00000116582 ENSMUST00000232154 Gm36169 lincRNA Interval_39982 chr12 100226438 100226694 + 0 NA Intergenic Intergenic 13686 ENSMUSG00000113362.1 ENSMUSG00000113362 ENSMUST00000220782 Gm40557 lincRNA Interval_173123 chrX 72917909 72919040 + 0 NA promoter-TSS (ENSMUSG00000031349.4) protein_coding-promoter-TSS (ENSMUSG00000031349.4) -190 ENSMUSG00000031347.12 ENSMUSG00000031347 ENSMUST00000152200 Cetn2 protein_coding Interval_56265 chr14 115459351 115459727 + 0 NA intron (ENSMUSG00000022112.14, intron 5 of 7) protein_coding-intron (ENSMUSG00000022112.14, intron 5 of 7) -49987 ENSMUSG00000093551.1 ENSMUSG00000093551 ENSMUST00000176582 4930505G20Rik processed_transcript Interval_36025 chr12 33386415 33386626 + 0 NA intron (ENSMUSG00000085664.1, intron 1 of 3) antisense-intron (ENSMUSG00000085664.1, intron 1 of 3) 8240 ENSMUSG00000085664.1 ENSMUSG00000085664 ENSMUST00000138617 Atxn7l1os2 antisense Interval_28706 chr11 77850408 77850980 + 0 NA promoter-TSS (ENSMUSG00000000631.20) protein_coding-promoter-TSS (ENSMUSG00000000631.20) 33850 ENSMUSG00000017453.4 ENSMUSG00000017453 ENSMUST00000155401 Pipox protein_coding Interval_2416 chr1 39135246 39135885 + 0 NA Intergenic Intergenic 51427 ENSMUSG00000098833.1 ENSMUSG00000098833 ENSMUST00000184059 Mir6349 miRNA Interval_109841 chr3 148850075 148850985 + 0 NA intron (ENSMUSG00000028184.12, intron 8 of 22) protein_coding-intron (ENSMUSG00000028184.12, intron 7 of 22) -138622 ENSMUSG00000104786.1 ENSMUSG00000104786 ENSMUST00000196445 Gm43573 antisense Interval_59157 chr15 45148724 45149393 + 0 NA Intergenic Intergenic -12393 ENSMUSG00000118565.1 ENSMUSG00000118565 ENSMUST00000238897 AC099642.1 processed_pseudogene Interval_401 chr1 4900267 4901088 + 0 NA Intergenic Intergenic 6184 ENSMUSG00000103280.1 ENSMUSG00000103280 ENSMUST00000194052 Gm37277 TEC Interval_155328 chr8 31371419 31373750 + 0 NA Intergenic Intergenic -6229 ENSMUSG00000109915.1 ENSMUSG00000109915 ENSMUST00000209524 7420700N18Rik lincRNA Interval_432 chr1 5188331 5189920 + 0 NA Intergenic Intergenic 88212 ENSMUSG00000104352.1 ENSMUSG00000104352 ENSMUST00000193351 Gm7182 processed_pseudogene Interval_156470 chr8 48481724 48483474 + 0 NA intron (ENSMUSG00000031561.16, intron 2 of 26) protein_coding-intron (ENSMUSG00000031561.16, intron 2 of 28) 72714 ENSMUSG00000031561.16 ENSMUSG00000031561 ENSMUST00000211812 Tenm3 protein_coding Interval_28361 chr11 75373487 75373790 + 0 NA intron (ENSMUSG00000018809.2, intron 2 of 2) protein_coding-intron (ENSMUSG00000018809.2, intron 2 of 10) 25143 ENSMUSG00000018809.2 ENSMUSG00000018809 ENSMUST00000135774 Smyd4 protein_coding Interval_120454 chr4 148719618 148720136 + 0 NA Intergenic Intergenic 6174 ENSMUSG00000087273.1 ENSMUSG00000087273 ENSMUST00000139895 Gm13203 lincRNA Interval_169555 chr9 99103286 99105295 + 0 NA intron (ENSMUSG00000032462.14, intron 3 of 23) protein_coding-intron (ENSMUSG00000032462.14, intron 3 of 23) 35635 ENSMUSG00000032462.14 ENSMUSG00000032462 ENSMUST00000124723 Pik3cb protein_coding Interval_95767 chr2 116002107 116002507 + 0 NA intron (ENSMUSG00000027210.20, intron 2 of 3) protein_coding-intron (ENSMUSG00000027210.20, intron 7 of 11) 65137 ENSMUSG00000086328.1 ENSMUSG00000086328 ENSMUST00000140185 2700033N17Rik lincRNA Interval_69467 chr16 93746903 93747767 + 0 NA intron (ENSMUSG00000022946.10, intron 3 of 35) protein_coding-intron (ENSMUSG00000022946.10, intron 4 of 36) -45454 ENSMUSG00000022946.10 ENSMUSG00000022946 ENSMUST00000228423 Dop1b protein_coding Interval_67532 chr16 50394135 50394786 + 0 NA intron (ENSMUSG00000022641.15, intron 2 of 16) protein_coding-intron (ENSMUSG00000022641.15, intron 2 of 15) 37849 ENSMUSG00000022641.15 ENSMUSG00000022641 ENSMUST00000130210 Bbx protein_coding Interval_89321 chr2 19301180 19302428 + 0 NA intron (ENSMUSG00000037683.14, intron 18 of 19) protein_coding-intron (ENSMUSG00000037683.14, intron 17 of 18) -43034 ENSMUSG00000087674.7 ENSMUSG00000087674 ENSMUST00000136456 4930447M23Rik lincRNA Interval_48443 chr13 99057311 99057950 + 0 NA Intergenic Intergenic -16980 ENSMUSG00000089488.1 ENSMUSG00000089488 ENSMUST00000158863 Gm24733 misc_RNA Interval_174334 chrX 144620029 144620457 + 0 NA intron (ENSMUSG00000041710.4, intron 1 of 5) protein_coding-intron (ENSMUSG00000041710.4, intron 1 of 10) -63906 ENSMUSG00000082106.3 ENSMUSG00000082106 ENSMUST00000117991 Mageb16-ps1 processed_pseudogene Interval_118083 chr4 128862443 128862776 + 0 NA intron (ENSMUSG00000085701.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000085701.1, intron 1 of 1) 6787 ENSMUSG00000084011.1 ENSMUSG00000084011 ENSMUST00000120199 Gm12969 processed_pseudogene Interval_16403 chr10 62745976 62746937 + 0 NA TTS (ENSMUSG00000020074.7) protein_coding-TTS (ENSMUSG00000020074.7) 13893 ENSMUSG00000020074.7 ENSMUSG00000020074 ENSMUST00000218946 Ccar1 protein_coding Interval_166260 chr9 57853391 57853845 + 0 NA Intergenic Intergenic -57397 ENSMUSG00000004661.15 ENSMUSG00000004661 ENSMUST00000167670 Arid3b protein_coding Interval_34597 chr12 6588126 6588603 + 0 NA Intergenic Intergenic -89749 ENSMUSG00000111967.1 ENSMUSG00000111967 ENSMUST00000218888 Gm3678 processed_pseudogene Interval_50533 chr14 14728214 14728891 + 0 NA intron (ENSMUSG00000021733.11, intron 2 of 25) protein_coding-intron (ENSMUSG00000021733.11, intron 1 of 24) 25473 ENSMUSG00000021733.11 ENSMUSG00000021733 ENSMUST00000225613 Slc4a7 protein_coding Interval_153867 chr8 10249279 10249666 + 0 NA exon (ENSMUSG00000039057.11, exon 1 of 6) protein_coding-exon (ENSMUSG00000039057.11, exon 1 of 6) 184 ENSMUSG00000039057.11 ENSMUSG00000039057 ENSMUST00000042103 Myo16 protein_coding Interval_84195 chr19 8692737 8693108 + 0 NA Intergenic Intergenic -10759 ENSMUSG00000087830.1 ENSMUSG00000087830 ENSMUST00000157205 Gm22820 misc_RNA Interval_134062 chr6 18484295 18486957 + 0 NA intron (ENSMUSG00000000416.16, intron 2 of 22) protein_coding-intron (ENSMUSG00000000416.16, intron 2 of 22) -36286 ENSMUSG00000093271.1 ENSMUSG00000093271 ENSMUST00000175530 Gm26233 miRNA Interval_57539 chr15 12196504 12197373 + 0 NA promoter-TSS (ENSMUSG00000115153.1) lincRNA-promoter-TSS (ENSMUSG00000115153.1) -319 ENSMUSG00000115153.1 ENSMUSG00000115153 ENSMUST00000227731 Gm49240 lincRNA Interval_27666 chr11 69372959 69374014 + 0 NA Intergenic Intergenic 22145 ENSMUSG00000044795.12 ENSMUSG00000044795 ENSMUST00000051620 Cyb5d1 protein_coding Interval_58821 chr15 38319371 38320311 + 0 NA intron (ENSMUSG00000115456.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000115456.1, intron 1 of 2) 7548 ENSMUSG00000115456.1 ENSMUSG00000115456 ENSMUST00000227097 Gm35248 lincRNA Interval_51365 chr14 27038629 27039963 + 0 NA promoter-TSS (ENSMUSG00000040717.6) protein_coding-promoter-TSS (ENSMUSG00000040717.6) -28101 ENSMUSG00000040717.6 ENSMUSG00000040717 ENSMUST00000225829 Il17rd protein_coding Interval_80413 chr18 41985274 41985494 + 0 NA TTS (ENSMUSG00000073574.4) protein_coding-TTS (ENSMUSG00000073574.4) 13665 ENSMUSG00000073574.4 ENSMUSG00000073574 ENSMUST00000097591 Grxcr2 protein_coding Interval_79150 chr18 25038365 25039243 + 0 NA intron (ENSMUSG00000034295.10, intron 11 of 24) protein_coding-intron (ENSMUSG00000034295.10, intron 13 of 26) 129890 ENSMUSG00000024269.11 ENSMUSG00000024269 ENSMUST00000115817 Tpgs2 protein_coding Interval_85599 chr19 28999984 29000634 + 0 NA intron (ENSMUSG00000024780.7, intron 3 of 6) protein_coding-intron (ENSMUSG00000024780.7, intron 3 of 6) 3533 ENSMUSG00000063754.7 ENSMUSG00000063754 ENSMUST00000183196 Gm10136 processed_pseudogene Interval_41094 chr12 111134157 111134951 + 0 NA Intergenic Intergenic 43354 ENSMUSG00000113200.1 ENSMUSG00000113200 ENSMUST00000221105 Gm48632 TEC Interval_80887 chr18 49926984 49927490 + 0 NA intron (ENSMUSG00000037416.13, intron 2 of 2) protein_coding-intron (ENSMUSG00000037416.13, intron 33 of 42) 4524 ENSMUSG00000037416.13 ENSMUSG00000037416 ENSMUST00000181042 Dmxl1 protein_coding Interval_9362 chr1 156588690 156589041 + 0 NA TTS (ENSMUSG00000104293.1) TEC-TTS (ENSMUSG00000104293.1) 5757 ENSMUSG00000104293.1 ENSMUSG00000104293 ENSMUST00000195501 Gm38043 TEC Interval_25460 chr11 48734785 48735450 + 0 NA exon (ENSMUSG00000083460.1, exon 1 of 1) processed_pseudogene-exon (ENSMUSG00000083460.1, exon 1 of 1) 444 ENSMUSG00000083460.1 ENSMUSG00000083460 ENSMUST00000118655 Gm12182 processed_pseudogene Interval_86503 chr19 41204352 41204553 + 0 NA intron (ENSMUSG00000025013.15, intron 1 of 20) protein_coding-intron (ENSMUSG00000025013.15, intron 1 of 20) 2322 ENSMUSG00000025013.15 ENSMUSG00000025013 ENSMUST00000169941 Tll2 protein_coding Interval_107206 chr3 104611546 104612459 + 0 NA Intergenic Intergenic -10763 ENSMUSG00000084653.1 ENSMUSG00000084653 ENSMUST00000122704 Gm26091 snRNA Interval_43289 chr13 28786833 28788100 + 0 NA intron (ENSMUSG00000085936.7, intron 2 of 7) processed_transcript-intron (ENSMUSG00000085936.7, intron 1 of 5) -39657 ENSMUSG00000092093.1 ENSMUSG00000092093 ENSMUST00000171026 Gm17528 pseudogene Interval_171672 chr9 120062662 120063392 + 0 NA intron (ENSMUSG00000052336.7, intron 2 of 2) protein_coding-intron (ENSMUSG00000052336.7, intron 1 of 1) -5969 ENSMUSG00000111792.1 ENSMUSG00000111792 ENSMUST00000216918 Gm33858 antisense Interval_109091 chr3 135682115 135683045 + 0 NA intron (ENSMUSG00000028163.17, intron 1 of 11) protein_coding-intron (ENSMUSG00000028163.17, intron 1 of 24) -28014 ENSMUSG00000106149.1 ENSMUSG00000106149 ENSMUST00000196513 Gm43430 TEC Interval_147890 chr7 75130799 75131168 + 0 NA intron (ENSMUSG00000053025.13, intron 5 of 7) protein_coding-intron (ENSMUSG00000053025.13, intron 9 of 12) 16743 ENSMUSG00000053025.13 ENSMUSG00000053025 ENSMUST00000206236 Sv2b protein_coding Interval_95877 chr2 117828861 117829101 + 0 NA intron (ENSMUSG00000086221.1, intron 2 of 5) lincRNA-intron (ENSMUSG00000086221.1, intron 2 of 5) 7053 ENSMUSG00000086221.1 ENSMUSG00000086221 ENSMUST00000149239 4930412B13Rik lincRNA Interval_52816 chr14 50846517 50847058 + 0 NA intron (ENSMUSG00000006281.8, intron 6 of 41) protein_coding-intron (ENSMUSG00000006281.8, intron 19 of 54) -16716 ENSMUSG00000006281.8 ENSMUSG00000006281 ENSMUST00000226789 Tep1 protein_coding Interval_12316 chr1 191646055 191646373 + 0 NA Intergenic Intergenic 48567 ENSMUSG00000102970.1 ENSMUSG00000102970 ENSMUST00000194205 Gm37349 TEC Interval_78463 chr18 13014484 13015665 + 0 NA intron (ENSMUSG00000037346.5, intron 1 of 1) protein_coding-intron (ENSMUSG00000037346.5, intron 1 of 2) 8037 ENSMUSG00000037346.5 ENSMUSG00000037346 ENSMUST00000234565 Hrh4 protein_coding Interval_127922 chr5 109096221 109097080 + 0 NA intron (ENSMUSG00000090688.2, intron 1 of 5) protein_coding-intron (ENSMUSG00000090688.2, intron 1 of 5) 1300 ENSMUSG00000090688.2 ENSMUSG00000090688 ENSMUST00000095922 Vmn2r12 protein_coding Interval_55229 chr14 79513262 79514226 + 0 NA intron (ENSMUSG00000036461.16, intron 1 of 8) protein_coding-intron (ENSMUSG00000036461.16, intron 1 of 8) -1942 ENSMUSG00000036461.16 ENSMUSG00000036461 ENSMUST00000227104 Elf1 protein_coding Interval_69615 chr16 94625128 94625686 + 0 NA intron (ENSMUSG00000022897.15, intron 2 of 5) protein_coding-intron (ENSMUSG00000022897.15, intron 2 of 11) 5030 ENSMUSG00000081692.1 ENSMUSG00000081692 ENSMUST00000119372 Gm15971 processed_pseudogene Interval_10714 chr1 173432056 173433001 + 0 NA intron (ENSMUSG00000037860.15, intron 2 of 5) protein_coding-intron (ENSMUSG00000037860.15, intron 5 of 11) -22826 ENSMUSG00000037860.15 ENSMUSG00000037860 ENSMUST00000135370 Aim2 protein_coding Interval_146644 chr7 49053031 49053811 + 0 NA intron (ENSMUSG00000052512.17, intron 2 of 39) protein_coding-intron (ENSMUSG00000052512.17, intron 2 of 39) 9160 ENSMUSG00000109068.1 ENSMUSG00000109068 ENSMUST00000207469 Gm45207 processed_pseudogene Interval_151486 chr7 123019397 123019678 + 0 NA Intergenic Intergenic 9425 ENSMUSG00000108396.1 ENSMUSG00000108396 ENSMUST00000205729 Gm6905 processed_pseudogene Interval_67965 chr16 61791352 61791985 + 0 NA Intergenic Intergenic -305793 ENSMUSG00000116619.1 ENSMUSG00000116619 ENSMUST00000232249 Gm49615 lincRNA Interval_25580 chr11 49913218 49913464 + 0 NA intron (ENSMUSG00000020374.16, intron 1 of 13) protein_coding-intron (ENSMUSG00000020374.16, intron 1 of 13) 17610 ENSMUSG00000080487.1 ENSMUSG00000080487 ENSMUST00000116837 Gm23492 miRNA Interval_17796 chr10 80138609 80139538 + 0 NA promoter-TSS (ENSMUSG00000035640.18) protein_coding-promoter-TSS (ENSMUSG00000035640.18) 441 ENSMUSG00000003072.15 ENSMUSG00000003072 ENSMUST00000105366 Atp5d protein_coding Interval_88483 chr2 5483880 5485122 + 0 NA intron (ENSMUSG00000039145.16, intron 2 of 2) protein_coding-intron (ENSMUSG00000039145.16, intron 2 of 10) -119070 ENSMUSG00000082013.1 ENSMUSG00000082013 ENSMUST00000117145 Gm13216 processed_pseudogene Interval_141511 chr6 128802729 128803409 + 0 NA intron (ENSMUSG00000107872.2, intron 3 of 5) protein_coding-intron (ENSMUSG00000107872.2, intron 3 of 5) -13854 ENSMUSG00000030325.16 ENSMUSG00000030325 ENSMUST00000174865 Klrb1c protein_coding Interval_23865 chr11 27264283 27264987 + 0 NA Intergenic Intergenic 54343 ENSMUSG00000088438.1 ENSMUSG00000088438 ENSMUST00000157813 Gm25387 snoRNA Interval_155195 chr8 27377249 27377485 + 0 NA intron (ENSMUSG00000031492.13, intron 1 of 4) protein_coding-intron (ENSMUSG00000031492.13, intron 1 of 5) 8599 ENSMUSG00000031492.13 ENSMUSG00000031492 ENSMUST00000079463 Chrnb3 protein_coding Interval_73258 chr17 35829432 35830302 + 0 NA promoter-TSS (ENSMUSG00000059714.13) protein_coding-promoter-TSS (ENSMUSG00000059714.13) -771 ENSMUSG00000059714.13 ENSMUSG00000059714 ENSMUST00000174297 Flot1 protein_coding Interval_111170 chr4 13799758 13800265 + 0 NA intron (ENSMUSG00000006586.15, intron 1 of 10) protein_coding-intron (ENSMUSG00000006586.15, intron 1 of 10) 48714 ENSMUSG00000006586.15 ENSMUSG00000006586 ENSMUST00000139736 Runx1t1 protein_coding Interval_47425 chr13 83932474 83933404 + 0 NA Intergenic Intergenic 41731 ENSMUSG00000100891.1 ENSMUSG00000100891 ENSMUST00000185600 2810049E08Rik lincRNA Interval_143195 chr7 4419828 4420140 + 0 NA Intergenic Intergenic 7546 ENSMUSG00000108761.1 ENSMUSG00000108761 ENSMUST00000206596 Atp6v0c-ps1 processed_pseudogene Interval_157049 chr8 64786715 64787228 + 0 NA intron (ENSMUSG00000031605.8, intron 4 of 13) protein_coding-intron (ENSMUSG00000031605.8, intron 4 of 14) 22167 ENSMUSG00000109879.1 ENSMUSG00000109879 ENSMUST00000210294 Gm10997 TEC Interval_89923 chr2 26516558 26516825 + 0 NA promoter-TSS (ENSMUSG00000026923.15) protein_coding-promoter-TSS (ENSMUSG00000026923.15) -41934 ENSMUSG00000082864.1 ENSMUSG00000082864 ENSMUST00000121427 Gm13358 processed_pseudogene Interval_163862 chr9 27265078 27265474 + 0 NA Intergenic Intergenic 28068 ENSMUSG00000111387.1 ENSMUSG00000111387 ENSMUST00000217080 Gm48803 lincRNA Interval_126709 chr5 92182159 92182591 + 0 NA exon (ENSMUSG00000029407.10, exon 13 of 13) protein_coding-exon (ENSMUSG00000029407.10, exon 13 of 13) 986 ENSMUSG00000029407.10 ENSMUSG00000029407 ENSMUST00000202362 Uso1 protein_coding Interval_67221 chr16 44516592 44517038 + 0 NA intron (ENSMUSG00000022687.12, intron 3 of 18) protein_coding-intron (ENSMUSG00000022687.12, intron 3 of 18) 41314 ENSMUSG00000093046.1 ENSMUSG00000093046 ENSMUST00000175305 Mir3081 miRNA Interval_142366 chr6 141025908 141026782 + 0 NA intron (ENSMUSG00000107638.2, intron 2 of 3) lincRNA-intron (ENSMUSG00000107638.2, intron 2 of 3) -18060 ENSMUSG00000107613.1 ENSMUSG00000107613 ENSMUST00000204599 Gm43927 processed_pseudogene Interval_3627 chr1 60081601 60081984 + 0 NA intron (ENSMUSG00000026019.15, intron 12 of 13) protein_coding-intron (ENSMUSG00000026019.15, intron 11 of 12) 3970 ENSMUSG00000026019.15 ENSMUSG00000026019 ENSMUST00000133767 Wdr12 protein_coding Interval_31754 chr11 102651300 102652055 + 0 NA Intergenic Intergenic 8003 ENSMUSG00000076129.1 ENSMUSG00000076129 ENSMUST00000102175 Gm22920 miRNA Interval_40692 chr12 107361039 107361515 + 0 NA Intergenic Intergenic -57864 ENSMUSG00000090607.1 ENSMUSG00000090607 ENSMUST00000165496 Gm17052 processed_pseudogene Interval_165748 chr9 52124526 52126276 + 0 NA intron (ENSMUSG00000035164.8, intron 3 of 5) protein_coding-intron (ENSMUSG00000035164.8, intron 3 of 5) 9778 ENSMUSG00000099311.1 ENSMUSG00000099311 ENSMUST00000184156 Mir6244 miRNA Interval_127972 chr5 109986830 109987135 + 0 NA Intergenic Intergenic 9416 ENSMUSG00000097863.1 ENSMUSG00000097863 ENSMUST00000181488 1010001B22Rik lincRNA Interval_151181 chr7 119032735 119033162 + 0 NA Intergenic Intergenic -48304 ENSMUSG00000008734.9 ENSMUSG00000008734 ENSMUST00000207614 Gprc5b protein_coding Interval_95510 chr2 110804587 110804963 + 0 NA intron (ENSMUSG00000074968.11, intron 4 of 17) protein_coding-intron (ENSMUSG00000074968.11, intron 4 of 26) -43211 ENSMUSG00000074968.11 ENSMUSG00000074968 ENSMUST00000140777 Ano3 protein_coding Interval_36184 chr12 38157310 38157702 + 0 NA intron (ENSMUSG00000036095.11, intron 12 of 22) protein_coding-intron (ENSMUSG00000036095.11, intron 12 of 24) 67604 ENSMUSG00000113941.1 ENSMUSG00000113941 ENSMUST00000222392 Gm35755 processed_pseudogene Interval_52304 chr14 44361566 44362614 + 0 NA Intergenic Intergenic -3267 ENSMUSG00000090379.1 ENSMUSG00000090379 ENSMUST00000168161 Gm8229 protein_coding Interval_71984 chr17 27431115 27431729 + 0 NA exon (ENSMUSG00000063239.17, exon 10 of 11) protein_coding-exon (ENSMUSG00000063239.17, exon 10 of 11) -6107 ENSMUSG00000116682.1 ENSMUSG00000116682 ENSMUST00000231804 Gm49789 TEC Interval_54045 chr14 64752304 64753151 + 0 NA intron (ENSMUSG00000060012.9, intron 21 of 39) protein_coding-intron (ENSMUSG00000060012.9, intron 21 of 39) -1191 ENSMUSG00000064442.1 ENSMUSG00000064442 ENSMUST00000082508 Gm26225 snoRNA Interval_61548 chr15 82268147 82268469 + 0 NA promoter-TSS (ENSMUSG00000022456.18) protein_coding-promoter-TSS (ENSMUSG00000022456.18) -494 ENSMUSG00000022456.18 ENSMUSG00000022456 ENSMUST00000230507 Septin3 protein_coding Interval_70773 chr17 14349525 14349999 + 0 NA intron (ENSMUSG00000023886.10, intron 7 of 12) protein_coding-intron (ENSMUSG00000023886.10, intron 7 of 12) 49180 ENSMUSG00000117328.1 ENSMUSG00000117328 ENSMUST00000233310 4930474M22Rik antisense Interval_134042 chr6 17966373 17966751 + 0 NA Intergenic Intergenic 51566 ENSMUSG00000106858.1 ENSMUSG00000106858 ENSMUST00000202926 Gm43844 TEC Interval_144893 chr7 28795617 28797284 + 0 NA promoter-TSS (ENSMUSG00000051735.7) protein_coding-promoter-TSS (ENSMUSG00000051735.7) 7481 ENSMUSG00000051735.7 ENSMUSG00000051735 ENSMUST00000207345 Rinl protein_coding Interval_96049 chr2 119444252 119444497 + 0 NA intron (ENSMUSG00000034154.15, intron 11 of 27) protein_coding-intron (ENSMUSG00000034154.15, intron 11 of 35) -4694 ENSMUSG00000034154.15 ENSMUSG00000034154 ENSMUST00000138707 Ino80 protein_coding Interval_91301 chr2 37556404 37557114 + 0 NA intron (ENSMUSG00000035437.15, intron 9 of 13) protein_coding-intron (ENSMUSG00000035437.15, intron 21 of 25) 29759 ENSMUSG00000026915.16 ENSMUSG00000026915 ENSMUST00000144206 Strbp protein_coding Interval_173108 chrX 71946507 71946875 + 0 NA Intergenic Intergenic -15934 ENSMUSG00000033361.13 ENSMUSG00000033361 ENSMUST00000048790 Prrg3 protein_coding Interval_169176 chr9 95196744 95197136 + 0 NA intron (ENSMUSG00000031129.9, intron 14 of 15) protein_coding-intron (ENSMUSG00000031129.9, intron 14 of 15) -204256 ENSMUSG00000111087.1 ENSMUSG00000111087 ENSMUST00000214362 Gm47168 processed_pseudogene Interval_65286 chr16 21231307 21232418 + 0 NA Intergenic Intergenic -6633 ENSMUSG00000116843.1 ENSMUSG00000116843 ENSMUST00000231454 Gm49750 lincRNA Interval_37456 chr12 69108001 69108570 + 0 NA Intergenic Intergenic 12062 ENSMUSG00000113716.1 ENSMUSG00000113716 ENSMUST00000222118 Gm47518 lincRNA Interval_142524 chr6 143070116 143070984 + 0 NA TTS (ENSMUSG00000030279.15) protein_coding-TTS (ENSMUSG00000030279.15) 29540 ENSMUSG00000030279.15 ENSMUSG00000030279 ENSMUST00000205079 C2cd5 protein_coding Interval_59453 chr15 53257061 53257576 + 0 NA intron (ENSMUSG00000061731.9, intron 1 of 10) protein_coding-intron (ENSMUSG00000061731.9, intron 1 of 10) -126601 ENSMUSG00000087805.2 ENSMUSG00000087805 ENSMUST00000157180 Gm27926 snRNA Interval_71954 chr17 27199709 27200283 + 0 NA exon (ENSMUSG00000044857.8, exon 1 of 7) protein_coding-exon (ENSMUSG00000044857.8, exon 1 of 7) -1036 ENSMUSG00000097090.1 ENSMUSG00000097090 ENSMUST00000180434 Gm26724 antisense Interval_65154 chr16 20220730 20221016 + 0 NA intron (ENSMUSG00000041215.16, intron 23 of 28) protein_coding-intron (ENSMUSG00000041215.16, intron 24 of 29) -1883 ENSMUSG00000041215.16 ENSMUSG00000041215 ENSMUST00000231997 Yeats2 protein_coding Interval_11426 chr1 181888086 181889481 + 0 NA Intergenic Intergenic -35594 ENSMUSG00000056699.7 ENSMUSG00000056699 ENSMUST00000070987 Gm5533 lincRNA Interval_167834 chr9 72943564 72944139 + 0 NA intron (ENSMUSG00000034910.5, intron 2 of 2) protein_coding-intron (ENSMUSG00000034910.5, intron 2 of 2) -14934 ENSMUSG00000092192.7 ENSMUSG00000092192 ENSMUST00000034734 Dnaaf4 protein_coding Interval_136091 chr6 50775895 50777397 + 0 NA intron (ENSMUSG00000107667.2, intron 1 of 2) lincRNA-intron (ENSMUSG00000107667.2, intron 1 of 2) 531 ENSMUSG00000107667.2 ENSMUSG00000107667 ENSMUST00000204275 C530044C16Rik lincRNA Interval_121126 chr4 153277987 153278554 + 0 NA Intergenic Intergenic 60094 ENSMUSG00000087454.1 ENSMUSG00000087454 ENSMUST00000126141 Gm13174 lincRNA Interval_158584 chr8 84631863 84632137 + 0 NA intron (ENSMUSG00000034656.18, intron 42 of 48) protein_coding-intron (ENSMUSG00000034656.18, intron 40 of 46) -14816 ENSMUSG00000086067.1 ENSMUSG00000086067 ENSMUST00000127527 Gm16183 antisense Interval_12719 chr10 4483792 4484105 + 0 NA promoter-TSS (ENSMUSG00000065371.1) snRNA-promoter-TSS (ENSMUSG00000065371.1) -286 ENSMUSG00000065371.1 ENSMUSG00000065371 ENSMUST00000083437 Gm22739 snRNA Interval_94407 chr2 90822572 90824737 + 0 NA intron (ENSMUSG00000040812.14, intron 18 of 18) protein_coding-intron (ENSMUSG00000040812.14, intron 18 of 21) -19078 ENSMUSG00000080977.1 ENSMUSG00000080977 ENSMUST00000118431 Gm13772 processed_pseudogene Interval_28102 chr11 72822212 72822558 + 0 NA intron (ENSMUSG00000055670.14, intron 3 of 54) protein_coding-intron (ENSMUSG00000055670.14, intron 3 of 54) -11076 ENSMUSG00000084329.1 ENSMUSG00000084329 ENSMUST00000118302 Gm6733 processed_pseudogene Interval_20425 chr10 117492634 117492981 + 0 NA Intergenic Intergenic -45314 ENSMUSG00000112344.1 ENSMUSG00000112344 ENSMUST00000220189 Gm32141 lincRNA Interval_157510 chr8 71028389 71029358 + 0 NA intron (ENSMUSG00000110554.1, intron 2 of 14) lincRNA-intron (ENSMUSG00000101854.2, intron 3 of 4) 2081 ENSMUSG00000110554.1 ENSMUSG00000110554 ENSMUST00000212780 Gm35256 lincRNA Interval_56379 chr14 118234563 118237442 + 0 NA promoter-TSS (ENSMUSG00000090534.1) lincRNA-promoter-TSS (ENSMUSG00000090534.1) 1028 ENSMUSG00000061517.8 ENSMUSG00000061517 ENSMUST00000170662 Sox21 protein_coding Interval_174477 chrX 153151648 153152396 + 0 NA intron (ENSMUSG00000041658.12, intron 4 of 4) protein_coding-intron (ENSMUSG00000041658.12, intron 5 of 10) 12035 ENSMUSG00000041658.12 ENSMUSG00000041658 ENSMUST00000144175 Rragb protein_coding Interval_49568 chr13 113021776 113021980 + 0 NA Intergenic Intergenic -13509 ENSMUSG00000078926.8 ENSMUSG00000078926 ENSMUST00000181741 Cdc20b protein_coding Interval_6405 chr1 107242432 107244046 + 0 NA intron (ENSMUSG00000073602.10, intron 1 of 7) protein_coding-intron (ENSMUSG00000073602.10, intron 1 of 7) 11051 ENSMUSG00000081114.1 ENSMUSG00000081114 ENSMUST00000120323 Gm15390 processed_pseudogene Interval_36544 chr12 49192636 49193674 + 0 NA Intergenic Intergenic 52899 ENSMUSG00000098099.1 ENSMUSG00000098099 ENSMUST00000182862 Gm7456 processed_pseudogene Interval_10718 chr1 173443684 173444398 + 0 NA intron (ENSMUSG00000037860.15, intron 2 of 5) protein_coding-intron (ENSMUSG00000037860.15, intron 5 of 11) -11313 ENSMUSG00000037860.15 ENSMUSG00000037860 ENSMUST00000135370 Aim2 protein_coding Interval_112817 chr4 45274945 45275153 + 0 NA intron (ENSMUSG00000035615.12, intron 13 of 15) protein_coding-intron (ENSMUSG00000035615.12, intron 13 of 15) -31059 ENSMUSG00000086284.1 ENSMUSG00000086284 ENSMUST00000134640 Frmpd1os antisense Interval_11202 chr1 180131386 180131891 + 0 NA intron (ENSMUSG00000026490.18, intron 7 of 16) protein_coding-intron (ENSMUSG00000026490.18, intron 20 of 34) 16513 ENSMUSG00000103636.1 ENSMUSG00000103636 ENSMUST00000195719 Gm38331 TEC Interval_64462 chr16 11603595 11603939 + 0 NA intron (ENSMUSG00000071669.14, intron 15 of 20) protein_coding-intron (ENSMUSG00000071669.14, intron 8 of 13) 88090 ENSMUSG00000085732.1 ENSMUSG00000085732 ENSMUST00000154314 Gm4279 antisense Interval_32000 chr11 104370703 104370903 + 0 NA intron (ENSMUSG00000018412.16, intron 3 of 13) protein_coding-intron (ENSMUSG00000018412.16, intron 4 of 14) 54497 ENSMUSG00000106014.1 ENSMUSG00000106014 ENSMUST00000195891 Gm47315 miRNA Interval_94591 chr2 92477708 92478299 + 0 NA Intergenic Intergenic -5923 ENSMUSG00000085261.1 ENSMUSG00000085261 ENSMUST00000141341 Gm13814 lincRNA Interval_47007 chr13 74291952 74293184 + 0 NA promoter-TSS (ENSMUSG00000021575.16) protein_coding-promoter-TSS (ENSMUSG00000021575.16) 24648 ENSMUSG00000021576.6 ENSMUSG00000021576 ENSMUST00000223386 Pdcd6 protein_coding Interval_136874 chr6 62175118 62175405 + 0 NA intron (ENSMUSG00000039578.17, intron 2 of 2) protein_coding-intron (ENSMUSG00000039578.17, intron 9 of 9) 118749 ENSMUSG00000107590.1 ENSMUSG00000107590 ENSMUST00000204019 Gm43897 processed_pseudogene Interval_139591 chr6 101838686 101839992 + 0 NA Intergenic Intergenic -1856 ENSMUSG00000107579.1 ENSMUSG00000107579 ENSMUST00000204336 Gm44176 lincRNA Interval_17907 chr10 80748574 80748943 + 0 NA Intergenic Intergenic 20229 ENSMUSG00000075558.3 ENSMUSG00000075558 ENSMUST00000105760 Gm17151 antisense Interval_149634 chr7 100227035 100228414 + 0 NA promoter-TSS (ENSMUSG00000030729.17) protein_coding-promoter-TSS (ENSMUSG00000030729.17) 48 ENSMUSG00000030729.17 ENSMUSG00000030729 ENSMUST00000054436 Pgm2l1 protein_coding Interval_121099 chr4 153028940 153029183 + 0 NA Intergenic Intergenic -15477 ENSMUSG00000080360.1 ENSMUSG00000080360 ENSMUST00000116710 Gm25779 miRNA Interval_98071 chr2 147432762 147433573 + 0 NA Intergenic Intergenic -29905 ENSMUSG00000083126.1 ENSMUSG00000083126 ENSMUST00000118814 Gm14109 processed_pseudogene Interval_64995 chr16 17744414 17745952 + 0 NA Intergenic Intergenic 11014 ENSMUSG00000116936.1 ENSMUSG00000116936 ENSMUST00000231811 Bod1-ps processed_pseudogene Interval_49540 chr13 112810872 112811934 + 0 NA intron (ENSMUSG00000021759.14, intron 1 of 5) protein_coding-intron (ENSMUSG00000021759.14, intron 1 of 5) 10540 ENSMUSG00000021759.14 ENSMUSG00000021759 ENSMUST00000070951 Plpp1 protein_coding Interval_66771 chr16 37503853 37504020 + 0 NA Intergenic Intergenic 35840 ENSMUSG00000022828.10 ENSMUSG00000022828 ENSMUST00000130350 Gtf2e1 protein_coding Interval_46995 chr13 74096611 74097396 + 0 NA Intergenic Intergenic -24512 ENSMUSG00000036123.8 ENSMUSG00000036123 ENSMUST00000221703 Slc9a3 protein_coding Interval_98235 chr2 150290718 150290935 + 0 NA Intergenic Intergenic -14935 ENSMUSG00000084320.2 ENSMUSG00000084320 ENSMUST00000120921 Gm14125 transcribed_processed_pseudogene Interval_50760 chr14 19234118 19234374 + 0 NA Intergenic Intergenic -28970 ENSMUSG00000114906.1 ENSMUSG00000114906 ENSMUST00000223602 Gm48098 processed_pseudogene Interval_107638 chr3 109088067 109089325 + 0 NA intron (ENSMUSG00000027880.6, intron 2 of 9) protein_coding-intron (ENSMUSG00000027880.6, intron 2 of 9) 8197 ENSMUSG00000027880.6 ENSMUSG00000027880 ENSMUST00000159926 Slc25a54 protein_coding Interval_13410 chr10 17931274 17931499 + 0 NA intron (ENSMUSG00000039879.9, intron 1 of 3) protein_coding-intron (ENSMUSG00000039879.9, intron 1 of 3) -16184 ENSMUSG00000039879.9 ENSMUSG00000039879 ENSMUST00000218268 Heca protein_coding Interval_117428 chr4 123633002 123636106 + 0 NA intron (ENSMUSG00000028649.21, intron 1 of 97) protein_coding-intron (ENSMUSG00000028649.21, intron 1 of 92) 4259 ENSMUSG00000081585.1 ENSMUSG00000081585 ENSMUST00000121158 Gm12926 processed_pseudogene Interval_131983 chr5 141835892 141837790 + 0 NA intron (ENSMUSG00000039683.16, intron 5 of 9) protein_coding-intron (ENSMUSG00000039683.16, intron 5 of 44) -220839 ENSMUSG00000085540.1 ENSMUSG00000085540 ENSMUST00000150385 Gm16036 antisense Interval_130920 chr5 134056869 134057523 + 0 NA Intergenic Intergenic 34255 ENSMUSG00000106800.1 ENSMUSG00000106800 ENSMUST00000202497 1700030N18Rik TEC Interval_89564 chr2 22864047 22865288 + 0 NA intron (ENSMUSG00000026786.14, intron 10 of 13) protein_coding-intron (ENSMUSG00000026786.14, intron 10 of 13) -30928 ENSMUSG00000026784.14 ENSMUSG00000026784 ENSMUST00000149229 Pdss1 protein_coding Interval_144968 chr7 29161598 29163400 + 0 NA TTS (ENSMUSG00000037239.8) protein_coding-TTS (ENSMUSG00000037239.8) -6265 ENSMUSG00000030590.15 ENSMUSG00000030590 ENSMUST00000138084 Fam98c protein_coding Interval_141834 chr6 134822821 134823301 + 0 NA Intergenic Intergenic -12783 ENSMUSG00000108233.1 ENSMUSG00000108233 ENSMUST00000203947 Gm44084 processed_pseudogene Interval_43294 chr13 28825950 28826481 + 0 NA promoter-TSS (ENSMUSG00000092093.1) pseudogene-promoter-TSS (ENSMUSG00000092093.1) -908 ENSMUSG00000092093.1 ENSMUSG00000092093 ENSMUST00000171026 Gm17528 pseudogene Interval_161768 chr8 122652647 122653336 + 0 NA intron (ENSMUSG00000006362.16, intron 1 of 1) protein_coding-intron (ENSMUSG00000006362.16, intron 1 of 10) -30257 ENSMUSG00000069867.3 ENSMUSG00000069867 ENSMUST00000212966 Pabpn1l protein_coding Interval_57678 chr15 15066731 15067361 + 0 NA Intergenic Intergenic -71141 ENSMUSG00000115208.1 ENSMUSG00000115208 ENSMUST00000226940 Gm49118 processed_pseudogene Interval_138166 chr6 85817949 85818910 + 0 NA intron (ENSMUSG00000079494.2, intron 2 of 2) protein_coding-intron (ENSMUSG00000079494.2, intron 2 of 2) 2525 ENSMUSG00000079495.2 ENSMUSG00000079495 ENSMUST00000087656 Nat8f6 protein_coding Interval_102582 chr3 27978929 27979251 + 0 NA intron (ENSMUSG00000027695.16, intron 2 of 4) protein_coding-intron (ENSMUSG00000027695.16, intron 2 of 26) -82722 ENSMUSG00000043164.3 ENSMUSG00000043164 ENSMUST00000058077 Tmem212 protein_coding Interval_58359 chr15 33532535 33532836 + 0 NA intron (ENSMUSG00000039007.10, intron 8 of 8) protein_coding-intron (ENSMUSG00000039007.10, intron 7 of 7) 57051 ENSMUSG00000088062.1 ENSMUSG00000088062 ENSMUST00000157437 Gm24476 rRNA Interval_15689 chr10 53580092 53581423 + 0 NA intron (ENSMUSG00000058298.10, intron 8 of 13) protein_coding-intron (ENSMUSG00000058298.10, intron 8 of 13) -5001 ENSMUSG00000112731.1 ENSMUSG00000112731 ENSMUST00000219731 Gm47739 sense_intronic Interval_8172 chr1 136233370 136234858 + 0 NA promoter-TSS (ENSMUSG00000041605.16) protein_coding-promoter-TSS (ENSMUSG00000041605.16) -4095 ENSMUSG00000041605.16 ENSMUSG00000041605 ENSMUST00000195177 Inava protein_coding Interval_120089 chr4 141750524 141752493 + 0 NA intron (ENSMUSG00000040706.4, intron 2 of 6) protein_coding-intron (ENSMUSG00000040706.4, intron 2 of 6) 4836 ENSMUSG00000040706.4 ENSMUSG00000040706 ENSMUST00000038161 Agmat protein_coding Interval_832 chr1 12170304 12170981 + 0 NA Intergenic Intergenic 49682 ENSMUSG00000101610.1 ENSMUSG00000101610 ENSMUST00000187748 Gm7560 processed_pseudogene Interval_39605 chr12 91503870 91504128 + 0 NA intron (ENSMUSG00000020963.15, intron 5 of 10) protein_coding-intron (ENSMUSG00000020963.15, intron 4 of 8) 21946 ENSMUSG00000099750.1 ENSMUSG00000099750 ENSMUST00000188341 Gm18827 processed_pseudogene Interval_2171 chr1 36836619 36836934 + 0 NA intron (ENSMUSG00000026116.11, intron 9 of 41) protein_coding-intron (ENSMUSG00000026116.11, intron 8 of 40) 35269 ENSMUSG00000103016.1 ENSMUSG00000103016 ENSMUST00000192008 Gm37506 TEC Interval_68983 chr16 89921737 89922889 + 0 NA intron (ENSMUSG00000002489.16, intron 2 of 27) protein_coding-intron (ENSMUSG00000002489.16, intron 2 of 27) -127031 ENSMUSG00000002489.16 ENSMUSG00000002489 ENSMUST00000136760 Tiam1 protein_coding Interval_170811 chr9 110916079 110917757 + 0 NA promoter-TSS (ENSMUSG00000096393.1) protein_coding-promoter-TSS (ENSMUSG00000096393.1) -57 ENSMUSG00000096393.1 ENSMUSG00000096393 ENSMUST00000177678 Fam240a protein_coding Interval_57658 chr15 13969823 13970439 + 0 NA Intergenic Intergenic 132074 ENSMUSG00000115824.1 ENSMUSG00000115824 ENSMUST00000226387 Gm49114 processed_pseudogene Interval_121145 chr4 153498904 153499146 + 0 NA Intergenic Intergenic -16846 ENSMUSG00000039546.9 ENSMUSG00000039546 ENSMUST00000149177 Ajap1 protein_coding Interval_100292 chr2 168205360 168207740 + 0 NA intron (ENSMUSG00000051149.15, intron 1 of 1) protein_coding-intron (ENSMUSG00000051149.15, intron 1 of 4) 159 ENSMUSG00000051149.15 ENSMUSG00000051149 ENSMUST00000131200 Adnp protein_coding Interval_88292 chr2 3431126 3432037 + 0 NA intron (ENSMUSG00000026648.18, intron 3 of 7) protein_coding-intron (ENSMUSG00000026648.18, intron 3 of 15) -8987 ENSMUSG00000026650.15 ENSMUSG00000026650 ENSMUST00000144584 Meig1 protein_coding Interval_40940 chr12 110046810 110047012 + 0 NA intron (ENSMUSG00000113868.1, intron 2 of 2) lincRNA-intron (ENSMUSG00000113868.1, intron 2 of 2) -15359 ENSMUSG00000113217.1 ENSMUSG00000113217 ENSMUST00000220598 Gm47187 processed_pseudogene Interval_164801 chr9 42001904 42003176 + 0 NA intron (ENSMUSG00000049313.8, intron 29 of 47) protein_coding-intron (ENSMUSG00000049313.8, intron 29 of 47) -17970 ENSMUSG00000049313.8 ENSMUSG00000049313 ENSMUST00000139133 Sorl1 protein_coding Interval_49107 chr13 108103804 108104018 + 0 NA intron (ENSMUSG00000068184.7, intron 1 of 3) protein_coding-intron (ENSMUSG00000068184.7, intron 1 of 3) 54573 ENSMUSG00000068184.7 ENSMUSG00000068184 ENSMUST00000225830 Ndufaf2 protein_coding Interval_163631 chr9 22814663 22815204 + 0 NA intron (ENSMUSG00000035919.16, intron 21 of 22) protein_coding-intron (ENSMUSG00000035919.16, intron 20 of 21) -42098 ENSMUSG00000098940.1 ENSMUSG00000098940 ENSMUST00000184937 Gm27639 snRNA Interval_58212 chr15 30913511 30913806 + 0 NA intron (ENSMUSG00000022240.10, intron 15 of 21) protein_coding-intron (ENSMUSG00000022240.10, intron 15 of 22) 49220 ENSMUSG00000115012.1 ENSMUSG00000115012 ENSMUST00000228332 9630009A06Rik antisense Interval_31240 chr11 99083371 99083794 + 0 NA intron (ENSMUSG00000017607.9, intron 2 of 12) protein_coding-intron (ENSMUSG00000017607.9, intron 2 of 12) -8241 ENSMUSG00000017607.9 ENSMUSG00000017607 ENSMUST00000123303 Tns4 protein_coding Interval_136857 chr6 61518950 61519549 + 0 NA intron (ENSMUSG00000039578.17, intron 3 of 3) protein_coding-intron (ENSMUSG00000039578.17, intron 4 of 9) 118642 ENSMUSG00000107757.1 ENSMUSG00000107757 ENSMUST00000204456 Gm43898 processed_pseudogene Interval_169960 chr9 103258229 103258905 + 0 NA intron (ENSMUSG00000033688.10, intron 3 of 6) protein_coding-intron (ENSMUSG00000033688.10, intron 13 of 16) 7658 ENSMUSG00000033688.10 ENSMUSG00000033688 ENSMUST00000142540 1300017J02Rik protein_coding Interval_107812 chr3 115687225 115688289 + 0 NA Intergenic Intergenic 27315 ENSMUSG00000045092.8 ENSMUSG00000045092 ENSMUST00000055676 S1pr1 protein_coding Interval_122666 chr5 24555276 24555732 + 0 NA promoter-TSS (ENSMUSG00000038199.12) protein_coding-promoter-TSS (ENSMUSG00000038199.12) -94 ENSMUSG00000038199.12 ENSMUSG00000038199 ENSMUST00000198709 Iqca1l protein_coding Interval_115929 chr4 106346950 106347343 + 0 NA intron (ENSMUSG00000028514.15, intron 4 of 67) protein_coding-intron (ENSMUSG00000028514.15, intron 4 of 67) 30933 ENSMUSG00000028514.15 ENSMUSG00000028514 ENSMUST00000150521 Usp24 protein_coding Interval_160425 chr8 109416861 109417485 + 0 NA Intergenic Intergenic 8571 ENSMUSG00000092821.1 ENSMUSG00000092821 ENSMUST00000175080 Gm23163 miRNA Interval_153500 chr7 145242273 145243894 + 0 NA intron (ENSMUSG00000048677.9, intron 24 of 24) protein_coding-intron (ENSMUSG00000048677.9, intron 19 of 20) -35003 ENSMUSG00000109305.1 ENSMUSG00000109305 ENSMUST00000207841 Smim38 protein_coding Interval_119092 chr4 135501700 135501955 + 0 NA intron (ENSMUSG00000028801.14, intron 1 of 8) protein_coding-intron (ENSMUSG00000028801.14, intron 1 of 8) 7037 ENSMUSG00000028801.14 ENSMUSG00000028801 ENSMUST00000063707 Stpg1 protein_coding Interval_33319 chr11 115898981 115900415 + 0 NA promoter-TSS (ENSMUSG00000048442.15) protein_coding-promoter-TSS (ENSMUSG00000048442.15) -268 ENSMUSG00000048442.15 ENSMUSG00000048442 ENSMUST00000131566 Smim5 protein_coding Interval_172343 chrX 13229799 13231566 + 0 NA Intergenic Intergenic -7645 ENSMUSG00000082090.1 ENSMUSG00000082090 ENSMUST00000119074 Gm16481 processed_pseudogene Interval_138677 chr6 91103149 91104015 + 0 NA intron (ENSMUSG00000030091.17, intron 1 of 39) protein_coding-intron (ENSMUSG00000030091.17, intron 1 of 39) -4960 ENSMUSG00000030091.17 ENSMUSG00000030091 ENSMUST00000203434 Nup210 protein_coding Interval_22657 chr11 12580981 12581365 + 0 NA Intergenic Intergenic -95760 ENSMUSG00000089034.1 ENSMUSG00000089034 ENSMUST00000158409 Gm22156 snoRNA Interval_94694 chr2 93421248 93421756 + 0 NA TTS (ENSMUSG00000027215.13) protein_coding-TTS (ENSMUSG00000027215.13) 505 ENSMUSG00000099238.1 ENSMUSG00000099238 ENSMUST00000184769 Mir7001 miRNA Interval_57451 chr15 11064258 11065634 + 0 NA exon (ENSMUSG00000047497.10, exon 1 of 24) protein_coding-exon (ENSMUSG00000047497.10, exon 1 of 24) 128 ENSMUSG00000047497.10 ENSMUSG00000047497 ENSMUST00000228940 Adamts12 protein_coding Interval_2941 chr1 51408368 51408608 + 0 NA Intergenic Intergenic 50443 ENSMUSG00000101702.1 ENSMUSG00000101702 ENSMUST00000189460 1700072G22Rik lincRNA Interval_89460 chr2 20777882 20778379 + 0 NA exon (ENSMUSG00000036617.17, exon 10 of 19) protein_coding-exon (ENSMUSG00000036617.17, exon 10 of 19) -64896 ENSMUSG00000086418.1 ENSMUSG00000086418 ENSMUST00000137186 Gm13362 antisense Interval_42800 chr13 19643990 19644732 + 0 NA TTS (ENSMUSG00000041138.16) protein_coding-TTS (ENSMUSG00000041138.16) 19606 ENSMUSG00000021319.7 ENSMUSG00000021319 ENSMUST00000222992 Sfrp4 protein_coding Interval_119390 chr4 137412175 137412380 + 0 NA Intergenic Intergenic -2486 ENSMUSG00000078520.3 ENSMUSG00000078520 ENSMUST00000024200 Cela3a protein_coding Interval_30298 chr11 93197615 93198036 + 0 NA intron (ENSMUSG00000056158.14, intron 2 of 8) protein_coding-intron (ENSMUSG00000056158.14, intron 3 of 9) 99797 ENSMUSG00000056158.14 ENSMUSG00000056158 ENSMUST00000107863 Car10 protein_coding Interval_85656 chr19 29385984 29386269 + 0 NA exon (ENSMUSG00000016496.7, exon 7 of 7) protein_coding-exon (ENSMUSG00000016496.7, exon 7 of 7) -6535 ENSMUSG00000117964.1 ENSMUSG00000117964 ENSMUST00000236682 Gm36043 antisense Interval_23424 chr11 22560897 22561374 + 0 NA Intergenic Intergenic 49047 ENSMUSG00000049904.7 ENSMUSG00000049904 ENSMUST00000059319 Tmem17 protein_coding Interval_1992 chr1 35715674 35716526 + 0 NA Intergenic Intergenic -45502 ENSMUSG00000064601.1 ENSMUSG00000064601 ENSMUST00000082667 Gm25634 snRNA Interval_36861 chr12 54771847 54772202 + 0 NA intron (ENSMUSG00000005656.9, intron 2 of 11) protein_coding-intron (ENSMUSG00000005656.9, intron 4 of 13) 23663 ENSMUSG00000005656.9 ENSMUSG00000005656 ENSMUST00000219865 Snx6 protein_coding Interval_97325 chr2 134455571 134456807 + 0 NA Intergenic Intergenic 98118 ENSMUSG00000027261.2 ENSMUSG00000027261 ENSMUST00000140794 Hao1 protein_coding Interval_20142 chr10 115234839 115236049 + 0 NA intron (ENSMUSG00000020130.9, intron 3 of 4) protein_coding-intron (ENSMUSG00000020130.9, intron 3 of 16) 15809 ENSMUSG00000020130.9 ENSMUSG00000020130 ENSMUST00000219274 Tbc1d15 protein_coding Interval_132280 chr5 143909098 143910450 + 0 NA promoter-TSS (ENSMUSG00000029610.13) protein_coding-promoter-TSS (ENSMUSG00000029610.13) 14 ENSMUSG00000029610.13 ENSMUSG00000029610 ENSMUST00000149473 Aimp2 protein_coding Interval_119636 chr4 138882080 138882973 + 0 NA TTS (ENSMUSG00000028751.13) protein_coding-TTS (ENSMUSG00000028751.13) 3166 ENSMUSG00000028751.13 ENSMUSG00000028751 ENSMUST00000105804 Pla2g2e protein_coding Interval_23549 chr11 23298443 23300731 + 0 NA Intergenic Intergenic -7308 ENSMUSG00000056342.16 ENSMUSG00000056342 ENSMUST00000125701 Usp34 protein_coding Interval_56267 chr14 115475210 115475741 + 0 NA intron (ENSMUSG00000022112.14, intron 5 of 7) protein_coding-intron (ENSMUSG00000022112.14, intron 5 of 7) -65923 ENSMUSG00000093551.1 ENSMUSG00000093551 ENSMUST00000176582 4930505G20Rik processed_transcript Interval_132437 chr5 144907719 144908053 + 0 NA intron (ENSMUSG00000038780.14, intron 1 of 18) protein_coding-intron (ENSMUSG00000038780.14, intron 1 of 17) -9892 ENSMUSG00000038780.14 ENSMUSG00000038780 ENSMUST00000198621 Smurf1 protein_coding Interval_138233 chr6 86493887 86494139 + 0 NA promoter-TSS (ENSMUSG00000101210.1) TEC-promoter-TSS (ENSMUSG00000101210.1) -104 ENSMUSG00000107876.1 ENSMUSG00000107876 ENSMUST00000203987 Gm43936 lincRNA Interval_19005 chr10 93728332 93729387 + 0 NA promoter-TSS (ENSMUSG00000086891.2) antisense-promoter-TSS (ENSMUSG00000086891.2) -652 ENSMUSG00000086891.2 ENSMUSG00000086891 ENSMUST00000131387 Gm15963 antisense Interval_100770 chr2 172453182 172453437 + 0 NA exon (ENSMUSG00000027502.11, exon 1 of 5) protein_coding-exon (ENSMUSG00000027502.11, exon 1 of 5) 332 ENSMUSG00000027502.11 ENSMUSG00000027502 ENSMUST00000140048 Rtf2 protein_coding Interval_53095 chr14 54423507 54423801 + 0 NA Intergenic Intergenic -3258 ENSMUSG00000010406.12 ENSMUSG00000010406 ENSMUST00000196273 Mrpl52 protein_coding Interval_76986 chr17 85395611 85396072 + 0 NA intron (ENSMUSG00000071037.6, intron 6 of 10) protein_coding-intron (ENSMUSG00000071037.6, intron 6 of 10) -102792 ENSMUSG00000097803.1 ENSMUSG00000097803 ENSMUST00000181130 Rpl31-ps16 processed_pseudogene Interval_85568 chr19 28656389 28656897 + 0 NA intron (ENSMUSG00000052942.13, intron 2 of 10) protein_coding-intron (ENSMUSG00000052942.13, intron 2 of 9) -21585 ENSMUSG00000097735.7 ENSMUSG00000097735 ENSMUST00000181625 D930032P07Rik lincRNA Interval_58397 chr15 34145019 34145230 + 0 NA exon (ENSMUSG00000022255.16, exon 12 of 12) protein_coding-exon (ENSMUSG00000022255.16, exon 12 of 12) -5748 ENSMUSG00000089072.1 ENSMUSG00000089072 ENSMUST00000158447 Gm24500 snoRNA Interval_123173 chr5 30358604 30359004 + 0 NA intron (ENSMUSG00000073102.7, intron 11 of 16) protein_coding-intron (ENSMUSG00000073102.7, intron 11 of 16) -7242 ENSMUSG00000106311.1 ENSMUSG00000106311 ENSMUST00000200001 Gm43755 sense_intronic Interval_11581 chr1 182959032 182961753 + 0 NA intron (ENSMUSG00000079164.8, intron 2 of 3) protein_coding-intron (ENSMUSG00000079164.8, intron 1 of 3) 5564 ENSMUSG00000079164.8 ENSMUSG00000079164 ENSMUST00000191820 Tlr5 protein_coding Interval_119507 chr4 138012621 138012831 + 0 NA intron (ENSMUSG00000028760.16, intron 2 of 8) protein_coding-intron (ENSMUSG00000028760.16, intron 2 of 9) 19213 ENSMUSG00000028760.16 ENSMUSG00000028760 ENSMUST00000148074 Eif4g3 protein_coding Interval_54517 chr14 70405822 70406150 + 0 NA intron (ENSMUSG00000033644.5, intron 10 of 22) protein_coding-intron (ENSMUSG00000033644.5, intron 10 of 22) 16294 ENSMUSG00000088717.1 ENSMUSG00000088717 ENSMUST00000158092 Gm22725 snoRNA Interval_82266 chr18 69779042 69780250 + 0 NA Intergenic Intergenic -1601 ENSMUSG00000064706.1 ENSMUSG00000064706 ENSMUST00000082772 Gm22508 misc_RNA Interval_11918 chr1 187126013 187128132 + 0 NA intron (ENSMUSG00000089730.2, intron 2 of 2) protein_coding-intron (ENSMUSG00000026611.17, intron 6 of 9) 1934 ENSMUSG00000089730.2 ENSMUSG00000089730 ENSMUST00000160380 1700007P06Rik antisense Interval_46779 chr13 70280950 70281747 + 0 NA Intergenic Intergenic 48526 ENSMUSG00000113463.1 ENSMUSG00000113463 ENSMUST00000222622 4930520P13Rik lincRNA Interval_2886 chr1 47826980 47827857 + 0 NA Intergenic Intergenic -75850 ENSMUSG00000088017.1 ENSMUSG00000088017 ENSMUST00000157392 Gm23829 misc_RNA Interval_2831 chr1 46059207 46059595 + 0 NA TTS (ENSMUSG00000099432.1) unprocessed_pseudogene-TTS (ENSMUSG00000099432.1) 3091 ENSMUSG00000099432.1 ENSMUSG00000099432 ENSMUST00000189861 Gm18849 unprocessed_pseudogene Interval_76839 chr17 84432210 84432434 + 0 NA exon (ENSMUSG00000024251.10, exon 17 of 38) protein_coding-exon (ENSMUSG00000024251.10, exon 17 of 38) 40893 ENSMUSG00000096415.1 ENSMUSG00000096415 ENSMUST00000179017 Gm24722 snRNA Interval_78248 chr18 10706094 10707232 + 0 NA promoter-TSS (ENSMUSG00000002475.16) protein_coding-promoter-TSS (ENSMUSG00000002475.16) -197 ENSMUSG00000097387.1 ENSMUSG00000097387 ENSMUST00000180948 4930563E18Rik bidirectional_promoter_lncRNA Interval_112721 chr4 44402398 44403164 + 0 NA Intergenic Intergenic 9814 ENSMUSG00000077587.1 ENSMUSG00000077587 ENSMUST00000104399 Gm24376 snoRNA Interval_16540 chr10 63464836 63465915 + 0 NA intron (ENSMUSG00000060843.11, intron 1 of 17) protein_coding-intron (ENSMUSG00000060843.11, intron 1 of 17) -43586 ENSMUSG00000048185.5 ENSMUSG00000048185 ENSMUST00000054760 Gm7075 protein_coding Interval_63279 chr15 100066255 100067218 + 0 NA intron (ENSMUSG00000023026.16, intron 1 of 37) protein_coding-intron (ENSMUSG00000023026.16, intron 1 of 37) 25021 ENSMUSG00000116021.1 ENSMUSG00000116021 ENSMUST00000230449 Gm49474 TEC Interval_41542 chr12 116157048 116157318 + 0 NA Intergenic Intergenic -4842 ENSMUSG00000113304.1 ENSMUSG00000113304 ENSMUST00000220938 Gm48618 unprocessed_pseudogene Interval_121295 chr4 154785512 154785818 + 0 NA Intergenic Intergenic -51794 ENSMUSG00000046637.3 ENSMUSG00000046637 ENSMUST00000137684 Ttc34 protein_coding Interval_81877 chr18 65577888 65578540 + 0 NA TTS (ENSMUSG00000117992.1) antisense-TTS (ENSMUSG00000117992.1) 2530 ENSMUSG00000117992.1 ENSMUSG00000117992 ENSMUST00000236474 Gm41760 antisense Interval_50106 chr14 8039638 8039917 + 0 NA exon (ENSMUSG00000025277.14, exon 3 of 9) protein_coding-exon (ENSMUSG00000025277.14, exon 3 of 9) 36858 ENSMUSG00000025277.14 ENSMUSG00000025277 ENSMUST00000026313 Abhd6 protein_coding Interval_80499 chr18 42898371 42900003 + 0 NA promoter-TSS (ENSMUSG00000024500.20) protein_coding-promoter-TSS (ENSMUSG00000024500.20) -36283 ENSMUSG00000084959.1 ENSMUSG00000084959 ENSMUST00000151215 4933407I08Rik antisense Interval_89971 chr2 26941551 26941863 + 0 NA intron (ENSMUSG00000049897.14, intron 5 of 5) protein_coding-intron (ENSMUSG00000049897.14, intron 5 of 18) 7660 ENSMUSG00000049897.14 ENSMUSG00000049897 ENSMUST00000055406 Stkld1 protein_coding Interval_85744 chr19 30237833 30238087 + 0 NA intron (ENSMUSG00000024863.6, intron 4 of 5) protein_coding-intron (ENSMUSG00000024863.6, intron 4 of 5) 5018 ENSMUSG00000024863.6 ENSMUSG00000024863 ENSMUST00000025797 Mbl2 protein_coding Interval_16668 chr10 66937093 66937451 + 0 NA Intergenic Intergenic 16970 ENSMUSG00000097921.2 ENSMUSG00000097921 ENSMUST00000181018 Gm26576 lincRNA Interval_9969 chr1 164443449 164443655 + 0 NA intron (ENSMUSG00000026576.12, intron 1 of 2) protein_coding-intron (ENSMUSG00000026576.12, intron 2 of 5) 167 ENSMUSG00000026576.12 ENSMUSG00000026576 ENSMUST00000192522 Atp1b1 protein_coding Interval_77851 chr18 4581330 4582078 + 0 NA Intergenic Intergenic -9059 ENSMUSG00000117521.1 ENSMUSG00000117521 ENSMUST00000234706 Gm50024 lincRNA Interval_172960 chrX 57945515 57945923 + 0 NA Intergenic Intergenic -43754 ENSMUSG00000093905.1 ENSMUSG00000093905 ENSMUST00000082977 Gm25023 snRNA Interval_90257 chr2 29360447 29361351 + 0 NA intron (ENSMUSG00000086994.1, intron 1 of 1) protein_coding-intron (ENSMUSG00000026799.15, intron 2 of 7) 35560 ENSMUSG00000086994.1 ENSMUSG00000086994 ENSMUST00000153600 Gm13402 antisense Interval_93853 chr2 77506307 77507310 + 0 NA intron (ENSMUSG00000027016.17, intron 3 of 9) protein_coding-intron (ENSMUSG00000027016.17, intron 1 of 7) 44139 ENSMUSG00000085845.7 ENSMUSG00000085845 ENSMUST00000126572 Gm13944 antisense Interval_166108 chr9 56746600 56747310 + 0 NA intron (ENSMUSG00000049556.5, intron 2 of 3) protein_coding-intron (ENSMUSG00000049556.5, intron 2 of 3) 22168 ENSMUSG00000049556.5 ENSMUSG00000049556 ENSMUST00000210995 Lingo1 protein_coding Interval_131600 chr5 138656686 138659390 + 0 NA Intergenic Intergenic 35179 ENSMUSG00000056014.15 ENSMUSG00000056014 ENSMUST00000069862 A430033K04Rik protein_coding Interval_80999 chr18 52538630 52538912 + 0 NA intron (ENSMUSG00000118365.1, intron 1 of 2) antisense-intron (ENSMUSG00000118365.1, intron 1 of 2) -8904 ENSMUSG00000024529.14 ENSMUSG00000024529 ENSMUST00000171470 Lox protein_coding Interval_161701 chr8 122162832 122163640 + 0 NA intron (ENSMUSG00000092329.1, intron 1 of 15) protein_coding-intron (ENSMUSG00000092329.1, intron 1 of 15) -95384 ENSMUSG00000043903.4 ENSMUSG00000043903 ENSMUST00000055537 Zfp469 protein_coding Interval_32587 chr11 108920086 108921949 + 0 NA promoter-TSS (ENSMUSG00000000142.15) protein_coding-promoter-TSS (ENSMUSG00000000142.15) -319 ENSMUSG00000000142.15 ENSMUSG00000000142 ENSMUST00000139682 Axin2 protein_coding Interval_50826 chr14 20067032 20068983 + 0 NA Intergenic Intergenic -9710 ENSMUSG00000114498.1 ENSMUSG00000114498 ENSMUST00000224881 Gm48339 processed_pseudogene Interval_71797 chr17 26159825 26160476 + 0 NA intron (ENSMUSG00000024182.16, intron 1 of 2) protein_coding-intron (ENSMUSG00000024182.16, intron 2 of 10) -1146 ENSMUSG00000117374.1 ENSMUSG00000117374 ENSMUST00000233991 Gm49983 processed_pseudogene Interval_106890 chr3 101603754 101605196 + 0 NA exon (ENSMUSG00000033161.10, exon 1 of 23) protein_coding-exon (ENSMUSG00000033161.10, exon 1 of 23) -7345 ENSMUSG00000104693.1 ENSMUSG00000104693 ENSMUST00000200347 Gm42941 sense_intronic Interval_143589 chr7 12997435 12998309 + 0 NA promoter-TSS (ENSMUSG00000030382.15) protein_coding-promoter-TSS (ENSMUSG00000030382.15) -1242 ENSMUSG00000005566.14 ENSMUSG00000005566 ENSMUST00000123778 Trim28 protein_coding Interval_88697 chr2 9852798 9853646 + 0 NA Intergenic Intergenic 22177 ENSMUSG00000015619.10 ENSMUSG00000015619 ENSMUST00000142305 Gata3 protein_coding Interval_123503 chr5 33009283 33010365 + 0 NA Intergenic Intergenic -9054 ENSMUSG00000018965.11 ENSMUSG00000018965 ENSMUST00000136667 Ywhah protein_coding Interval_122774 chr5 25310976 25311168 + 0 NA exon (ENSMUSG00000038056.15, exon 38 of 59) protein_coding-exon (ENSMUSG00000038056.15, exon 38 of 59) -10997 ENSMUSG00000038056.15 ENSMUSG00000038056 ENSMUST00000172626 Kmt2c protein_coding Interval_91911 chr2 51255149 51255456 + 0 NA intron (ENSMUSG00000086349.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000086349.1, intron 1 of 2) 13471 ENSMUSG00000086349.1 ENSMUSG00000086349 ENSMUST00000139497 Gm13497 lincRNA Interval_85665 chr19 29482416 29482686 + 0 NA intron (ENSMUSG00000097855.8, intron 2 of 5) antisense-intron (ENSMUSG00000097855.8, intron 2 of 5) 38419 ENSMUSG00000097855.8 ENSMUSG00000097855 ENSMUST00000180737 A930007I19Rik antisense Interval_154073 chr8 12486185 12488007 + 0 NA Intergenic Intergenic -15803 ENSMUSG00000109582.1 ENSMUSG00000109582 ENSMUST00000211062 4933439N14Rik lincRNA Interval_126852 chr5 94724340 94725085 + 0 NA Intergenic Intergenic -8644 ENSMUSG00000107064.1 ENSMUSG00000107064 ENSMUST00000202563 Gm42561 unprocessed_pseudogene Interval_77305 chr17 87932931 87933190 + 0 NA Intergenic Intergenic 12083 ENSMUSG00000093922.1 ENSMUSG00000093922 ENSMUST00000179601 Rpl36-ps4 protein_coding Interval_98704 chr2 154423234 154423874 + 0 NA Intergenic Intergenic -13288 ENSMUSG00000038533.15 ENSMUSG00000038533 ENSMUST00000139506 Cbfa2t2 protein_coding Interval_118674 chr4 133129504 133132312 + 0 NA intron (ENSMUSG00000028868.13, intron 1 of 8) protein_coding-intron (ENSMUSG00000028868.13, intron 1 of 8) 368 ENSMUSG00000028868.13 ENSMUSG00000028868 ENSMUST00000136637 Wasf2 protein_coding Interval_68632 chr16 82202278 82202573 + 0 NA Intergenic Intergenic 30134 ENSMUSG00000116937.1 ENSMUSG00000116937 ENSMUST00000232378 Gm41480 lincRNA Interval_148295 chr7 80342966 80343727 + 0 NA promoter-TSS (ENSMUSG00000030532.6) protein_coding-promoter-TSS (ENSMUSG00000030532.6) -220 ENSMUSG00000030532.6 ENSMUSG00000030532 ENSMUST00000206089 Hddc3 protein_coding Interval_131278 chr5 136135317 136136762 + 0 NA promoter-TSS (ENSMUSG00000029703.10) protein_coding-promoter-TSS (ENSMUSG00000029703.10) -37 ENSMUSG00000029703.10 ENSMUSG00000029703 ENSMUST00000150406 Lrwd1 protein_coding Interval_106743 chr3 100312511 100312711 + 0 NA Intergenic Intergenic 9323 ENSMUSG00000064573.1 ENSMUSG00000064573 ENSMUST00000082639 Gm25802 snoRNA Interval_146211 chr7 44723298 44723555 + 0 NA Intergenic Intergenic 14684 ENSMUSG00000066500.5 ENSMUSG00000066500 ENSMUST00000207182 Izumo2 protein_coding Interval_36807 chr12 54224831 54226617 + 0 NA Intergenic Intergenic -7891 ENSMUSG00000112821.1 ENSMUSG00000112821 ENSMUST00000220132 1700104L18Rik lincRNA Interval_143841 chr7 16650808 16651481 + 0 NA intron (ENSMUSG00000108307.1, intron 2 of 2) transcribed_unprocessed_pseudogene-intron (ENSMUSG00000108307.1, intron 2 of 2) 636 ENSMUSG00000108307.1 ENSMUSG00000108307 ENSMUST00000206683 Ceacam-ps1 transcribed_unprocessed_pseudogene Interval_122852 chr5 26079180 26079457 + 0 NA Intergenic Intergenic 8781 ENSMUSG00000105422.1 ENSMUSG00000105422 ENSMUST00000197666 Gm6089 processed_pseudogene Interval_109200 chr3 137853276 137853474 + 0 NA Intergenic Intergenic 10808 ENSMUSG00000105676.1 ENSMUSG00000105676 ENSMUST00000198830 Gm43403 antisense Interval_74609 chr17 53697166 53698211 + 0 NA Intergenic Intergenic -2018 ENSMUSG00000107430.1 ENSMUSG00000107430 ENSMUST00000203555 Gm31532 processed_pseudogene Interval_123311 chr5 31309210 31309833 + 0 NA intron (ENSMUSG00000059434.9, intron 14 of 16) protein_coding-intron (ENSMUSG00000059434.9, intron 16 of 18) 11967 ENSMUSG00000059434.9 ENSMUSG00000059434 ENSMUST00000202242 Gckr protein_coding Interval_34357 chr12 3589473 3590311 + 0 NA intron (ENSMUSG00000071454.13, intron 2 of 2) protein_coding-intron (ENSMUSG00000071454.13, intron 2 of 18) 17422 ENSMUSG00000071454.13 ENSMUSG00000071454 ENSMUST00000174293 Dtnb protein_coding Interval_140180 chr6 115036984 115038214 + 0 NA intron (ENSMUSG00000030316.13, intron 1 of 4) protein_coding-intron (ENSMUSG00000030316.13, intron 1 of 7) 256 ENSMUSG00000030316.13 ENSMUSG00000030316 ENSMUST00000144445 Tamm41 protein_coding Interval_149884 chr7 102235993 102236736 + 0 NA TTS (ENSMUSG00000030990.18) protein_coding-TTS (ENSMUSG00000030990.18) 510 ENSMUSG00000111339.1 ENSMUSG00000111339 ENSMUST00000214560 AC139579.1 processed_transcript Interval_134316 chr6 25032928 25033956 + 0 NA Intergenic Intergenic 13856 ENSMUSG00000107212.1 ENSMUSG00000107212 ENSMUST00000202130 Gm5302 processed_pseudogene Interval_27478 chr11 68126268 68126501 + 0 NA intron (ENSMUSG00000020903.13, intron 6 of 6) protein_coding-intron (ENSMUSG00000020903.13, intron 7 of 7) -30420 ENSMUSG00000083924.1 ENSMUSG00000083924 ENSMUST00000120312 Gm12304 processed_pseudogene Interval_1843 chr1 34102754 34104641 + 0 NA intron (ENSMUSG00000026131.20, intron 1 of 3) protein_coding-intron (ENSMUSG00000026131.20, intron 2 of 97) -13662 ENSMUSG00000105982.1 ENSMUSG00000105982 ENSMUST00000198033 Mir6896 miRNA Interval_15596 chr10 52201739 52202341 + 0 NA Intergenic Intergenic -7084 ENSMUSG00000019893.13 ENSMUSG00000019893 ENSMUST00000219692 Ros1 protein_coding Interval_125071 chr5 64254020 64255350 + 0 NA intron (ENSMUSG00000029174.18, intron 1 of 18) protein_coding-intron (ENSMUSG00000029174.18, intron 2 of 21) -1460 ENSMUSG00000081143.2 ENSMUSG00000081143 ENSMUST00000064305 Gm15823 processed_pseudogene Interval_147450 chr7 67366368 67366590 + 0 NA intron (ENSMUSG00000030557.17, intron 1 of 11) protein_coding-intron (ENSMUSG00000030557.17, intron 1 of 10) 4501 ENSMUSG00000109363.1 ENSMUSG00000109363 ENSMUST00000207911 Gm44668 TEC Interval_67824 chr16 57482286 57483131 + 0 NA intron (ENSMUSG00000022748.8, intron 1 of 1) protein_coding-intron (ENSMUSG00000022748.8, intron 1 of 1) 124156 ENSMUSG00000022748.8 ENSMUSG00000022748 ENSMUST00000232413 Cmss1 protein_coding Interval_39112 chr12 85158813 85160184 + 0 NA Intergenic Intergenic -8248 ENSMUSG00000019235.9 ENSMUSG00000019235 ENSMUST00000223399 Rps6kl1 protein_coding Interval_94969 chr2 102278134 102278368 + 0 NA Intergenic Intergenic 33956 ENSMUSG00000083306.1 ENSMUSG00000083306 ENSMUST00000122411 Gm13868 processed_pseudogene Interval_142999 chr6 148231329 148232024 + 0 NA TTS (ENSMUSG00000030306.14) protein_coding-TTS (ENSMUSG00000030306.14) -17103 ENSMUSG00000084823.2 ENSMUSG00000084823 ENSMUST00000130872 Gm17216 lincRNA Interval_108633 chr3 129672147 129674168 + 0 NA Intergenic Intergenic 11084 ENSMUSG00000092701.1 ENSMUSG00000092701 ENSMUST00000174960 Gm24515 miRNA Interval_173284 chrX 76260199 76260830 + 0 NA intron (ENSMUSG00000086207.1, intron 2 of 3) antisense-intron (ENSMUSG00000086207.1, intron 2 of 3) 878 ENSMUSG00000086207.1 ENSMUSG00000086207 ENSMUST00000140450 Gm14717 antisense Interval_63850 chr16 3983379 3983582 + 0 NA intron (ENSMUSG00000039738.16, intron 3 of 7) protein_coding-intron (ENSMUSG00000039738.16, intron 11 of 14) -17840 ENSMUSG00000049871.14 ENSMUSG00000049871 ENSMUST00000163478 Nlrc3 protein_coding Interval_128284 chr5 112276101 112277186 + 0 NA promoter-TSS (ENSMUSG00000029344.15) protein_coding-promoter-TSS (ENSMUSG00000029344.15) -64 ENSMUSG00000029344.15 ENSMUSG00000029344 ENSMUST00000139482 Tpst2 protein_coding Interval_36557 chr12 49649687 49650210 + 0 NA Intergenic Intergenic -71365 ENSMUSG00000089025.1 ENSMUSG00000089025 ENSMUST00000158400 Gm25015 snoRNA Interval_6497 chr1 112451617 112453874 + 0 NA Intergenic Intergenic -15166 ENSMUSG00000088691.1 ENSMUSG00000088691 ENSMUST00000158066 Gm22331 snoRNA Interval_102636 chr3 28743003 28743875 + 0 NA intron (ENSMUSG00000091329.2, intron 1 of 2) antisense-intron (ENSMUSG00000091329.2, intron 1 of 2) -1199 ENSMUSG00000091329.2 ENSMUSG00000091329 ENSMUST00000193387 1700112D23Rik antisense Interval_154341 chr8 14846386 14846929 + 0 NA TTS (ENSMUSG00000047495.15) protein_coding-TTS (ENSMUSG00000047495.15) -42347 ENSMUSG00000026317.7 ENSMUSG00000026317 ENSMUST00000128839 Cln8 protein_coding Interval_142968 chr6 147621374 147621634 + 0 NA intron (ENSMUSG00000030301.17, intron 12 of 12) protein_coding-intron (ENSMUSG00000030301.17, intron 12 of 12) -68737 ENSMUSG00000085077.1 ENSMUSG00000085077 ENSMUST00000141575 1700049E15Rik lincRNA Interval_43775 chr13 36315414 36315755 + 0 NA intron (ENSMUSG00000021420.13, intron 4 of 7) protein_coding-intron (ENSMUSG00000021420.13, intron 4 of 6) -11374 ENSMUSG00000021420.13 ENSMUSG00000021420 ENSMUST00000225048 Fars2 protein_coding Interval_16016 chr10 60140799 60142221 + 0 NA Intergenic Intergenic 14734 ENSMUSG00000105468.1 ENSMUSG00000105468 ENSMUST00000198998 Mir6906 miRNA Interval_129099 chr5 117388175 117389484 + 0 NA promoter-TSS (ENSMUSG00000086075.1) lincRNA-promoter-TSS (ENSMUSG00000086075.1) 193 ENSMUSG00000029363.14 ENSMUSG00000029363 ENSMUST00000111953 Rfc5 protein_coding Interval_97373 chr2 135553054 135553672 + 0 NA intron (ENSMUSG00000085631.1, intron 1 of 1) antisense-intron (ENSMUSG00000085631.1, intron 1 of 1) 30221 ENSMUSG00000085631.1 ENSMUSG00000085631 ENSMUST00000129868 9630028H03Rik antisense Interval_100045 chr2 166730223 166732013 + 0 NA Intergenic Intergenic -27524 ENSMUSG00000039621.13 ENSMUSG00000039621 ENSMUST00000140624 Prex1 protein_coding Interval_50602 chr14 16379966 16380764 + 0 NA intron (ENSMUSG00000017485.11, intron 1 of 35) protein_coding-intron (ENSMUSG00000017485.11, intron 1 of 35) -14097 ENSMUSG00000114243.1 ENSMUSG00000114243 ENSMUST00000225819 Gm48163 antisense Interval_106341 chr3 95497864 95498339 + 0 NA TTS (ENSMUSG00000015522.18) protein_coding-TTS (ENSMUSG00000015522.18) -1155 ENSMUSG00000028111.4 ENSMUSG00000028111 ENSMUST00000015664 Ctsk protein_coding Interval_41977 chr13 5832569 5833128 + 0 NA Intergenic Intergenic -10990 ENSMUSG00000080562.2 ENSMUSG00000080562 ENSMUST00000116912 Gm26043 miRNA Interval_1971 chr1 35238498 35238725 + 0 NA Intergenic Intergenic -59527 ENSMUSG00000077231.1 ENSMUSG00000077231 ENSMUST00000104043 Gm25096 snoRNA Interval_81732 chr18 64078936 64079161 + 0 NA Intergenic Intergenic 2372 ENSMUSG00000117673.1 ENSMUSG00000117673 ENSMUST00000237015 Gm6974 processed_pseudogene Interval_50550 chr14 14961952 14962302 + 0 NA intron (ENSMUSG00000042567.20, intron 29 of 35) protein_coding-intron (ENSMUSG00000042567.20, intron 11 of 12) 80042 ENSMUSG00000114542.1 ENSMUSG00000114542 ENSMUST00000224124 Gm18142 processed_pseudogene Interval_79054 chr18 24188157 24189267 + 0 NA Intergenic Intergenic -43885 ENSMUSG00000000420.15 ENSMUSG00000000420 ENSMUST00000170191 Galnt1 protein_coding Interval_40684 chr12 107219153 107219732 + 0 NA Intergenic Intergenic -13376 ENSMUSG00000082362.1 ENSMUSG00000082362 ENSMUST00000117317 Gm5187 processed_pseudogene Interval_134846 chr6 32272760 32272989 + 0 NA intron (ENSMUSG00000029765.12, intron 4 of 31) protein_coding-intron (ENSMUSG00000029765.12, intron 4 of 31) -31039 ENSMUSG00000086720.1 ENSMUSG00000086720 ENSMUST00000143328 Plxna4os3 antisense Interval_101243 chr2 179791914 179792765 + 0 NA intron (ENSMUSG00000000305.12, intron 2 of 2) protein_coding-intron (ENSMUSG00000000305.12, intron 3 of 15) 15176 ENSMUSG00000000305.12 ENSMUSG00000000305 ENSMUST00000098996 Cdh4 protein_coding Interval_20443 chr10 117647398 117648611 + 0 NA intron (ENSMUSG00000020183.11, intron 2 of 3) protein_coding-intron (ENSMUSG00000020183.11, intron 2 of 8) 14384 ENSMUSG00000096357.1 ENSMUSG00000096357 ENSMUST00000178844 Gm25709 snRNA Interval_72116 chr17 28133093 28133673 + 0 NA Intergenic Intergenic 6723 ENSMUSG00000117189.1 ENSMUSG00000117189 ENSMUST00000232878 Gm49897 TEC Interval_114072 chr4 63105127 63105999 + 0 NA intron (ENSMUSG00000028358.15, intron 11 of 14) protein_coding-intron (ENSMUSG00000028358.15, intron 11 of 11) -14837 ENSMUSG00000028358.15 ENSMUSG00000028358 ENSMUST00000151324 Zfp618 protein_coding Interval_160231 chr8 107292758 107294506 + 0 NA promoter-TSS (ENSMUSG00000003847.16) protein_coding-promoter-TSS (ENSMUSG00000003847.16) 162 ENSMUSG00000003847.16 ENSMUSG00000003847 ENSMUST00000147588 Nfat5 protein_coding Interval_148766 chr7 86503435 86504240 + 0 NA Intergenic Intergenic -11359 ENSMUSG00000062878.3 ENSMUSG00000062878 ENSMUST00000077800 Olfr298 protein_coding Interval_92219 chr2 57020695 57020965 + 0 NA Intergenic Intergenic -58918 ENSMUSG00000082578.1 ENSMUSG00000082578 ENSMUST00000117926 Gm13527 processed_pseudogene Interval_140655 chr6 120324274 120325299 + 0 NA TTS (ENSMUSG00000030177.14) protein_coding-TTS (ENSMUSG00000030177.14) -30227 ENSMUSG00000041372.10 ENSMUSG00000041372 ENSMUST00000212457 B4galnt3 protein_coding Interval_135868 chr6 48063801 48064908 + 0 NA TTS (ENSMUSG00000057691.8) protein_coding-TTS (ENSMUSG00000057691.8) 15651 ENSMUSG00000092928.1 ENSMUSG00000092928 ENSMUST00000175187 Gm24563 miRNA Interval_112552 chr4 43058549 43059670 + 0 NA promoter-TSS (ENSMUSG00000028456.18) protein_coding-promoter-TSS (ENSMUSG00000028456.18) 13067 ENSMUSG00000096974.2 ENSMUSG00000096974 ENSMUST00000211208 Gm26881 antisense Interval_123857 chr5 35989867 35990872 + 0 NA TTS (ENSMUSG00000029094.12) protein_coding-TTS (ENSMUSG00000029094.12) 6181 ENSMUSG00000029094.12 ENSMUSG00000029094 ENSMUST00000201482 Afap1 protein_coding Interval_46010 chr13 60059937 60060834 + 0 NA intron (ENSMUSG00000114531.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000114531.1, intron 1 of 2) -2760 ENSMUSG00000114795.1 ENSMUSG00000114795 ENSMUST00000223983 Gm48396 lincRNA Interval_61371 chr15 81167420 81168689 + 0 NA intron (ENSMUSG00000042292.18, intron 1 of 14) protein_coding-intron (ENSMUSG00000042292.18, intron 1 of 3) -22799 ENSMUSG00000047938.7 ENSMUSG00000047938 ENSMUST00000138715 4930483J18Rik processed_transcript Interval_123193 chr5 30516317 30516920 + 0 NA intron (ENSMUSG00000053194.2, intron 3 of 6) protein_coding-intron (ENSMUSG00000053194.2, intron 3 of 6) -1934 ENSMUSG00000088327.1 ENSMUSG00000088327 ENSMUST00000157702 Gm25666 snRNA Interval_161356 chr8 119926740 119928186 + 0 NA intron (ENSMUSG00000092329.1, intron 1 of 15) protein_coding-intron (ENSMUSG00000031826.20, intron 1 of 6) 16622 ENSMUSG00000092329.1 ENSMUSG00000092329 ENSMUST00000127664 Galnt2l protein_coding Interval_75542 chr17 67912719 67913020 + 0 NA intron (ENSMUSG00000024043.13, intron 1 of 17) protein_coding-intron (ENSMUSG00000024043.13, intron 1 of 17) -39821 ENSMUSG00000024043.13 ENSMUSG00000024043 ENSMUST00000170581 Arhgap28 protein_coding Interval_42102 chr13 8788055 8788367 + 0 NA Intergenic Intergenic 10191 ENSMUSG00000113391.1 ENSMUSG00000113391 ENSMUST00000221553 Gm48327 TEC Interval_150292 chr7 109380297 109381719 + 0 NA intron (ENSMUSG00000031027.15, intron 1 of 13) protein_coding-intron (ENSMUSG00000031027.15, intron 1 of 12) 7867 ENSMUSG00000081370.1 ENSMUSG00000081370 ENSMUST00000120160 Gm9105 processed_pseudogene Interval_107528 chr3 108318356 108318715 + 0 NA intron (ENSMUSG00000068747.14, intron 3 of 20) protein_coding-intron (ENSMUSG00000068747.14, intron 3 of 19) 30654 ENSMUSG00000105358.1 ENSMUSG00000105358 ENSMUST00000198943 Gm43099 TEC Interval_144251 chr7 23966059 23966467 + 0 NA TTS (ENSMUSG00000109065.1) unprocessed_pseudogene-TTS (ENSMUSG00000109065.1) 1123 ENSMUSG00000109065.1 ENSMUSG00000109065 ENSMUST00000208115 Gm5324 unprocessed_pseudogene Interval_59184 chr15 47053039 47053520 + 0 NA Intergenic Intergenic -108831 ENSMUSG00000088679.1 ENSMUSG00000088679 ENSMUST00000158054 Gm23665 snRNA Interval_66776 chr16 37523363 37523601 + 0 NA intron (ENSMUSG00000022828.10, intron 2 of 4) protein_coding-intron (ENSMUSG00000022828.10, intron 2 of 4) 16294 ENSMUSG00000022828.10 ENSMUSG00000022828 ENSMUST00000130350 Gtf2e1 protein_coding Interval_98482 chr2 152717614 152718381 + 0 NA Intergenic Intergenic -18254 ENSMUSG00000042745.9 ENSMUSG00000042745 ENSMUST00000109824 Id1 protein_coding Interval_99088 chr2 157099831 157100682 + 0 NA exon (ENSMUSG00000027639.16, exon 15 of 15) protein_coding-exon (ENSMUSG00000027639.16, exon 15 of 15) 10356 ENSMUSG00000027639.16 ENSMUSG00000027639 ENSMUST00000152866 Samhd1 protein_coding Interval_130786 chr5 130393291 130393780 + 0 NA intron (ENSMUSG00000060371.12, intron 1 of 2) protein_coding-intron (ENSMUSG00000060371.12, intron 1 of 6) 8838 ENSMUSG00000060371.12 ENSMUSG00000060371 ENSMUST00000111288 Caln1 protein_coding Interval_161297 chr8 119590572 119591340 + 0 NA intron (ENSMUSG00000031831.6, intron 7 of 11) protein_coding-intron (ENSMUSG00000031831.6, intron 7 of 11) 11669 ENSMUSG00000081378.1 ENSMUSG00000081378 ENSMUST00000117927 Rps13-ps4 processed_pseudogene Interval_122834 chr5 25933492 25933993 + 0 NA Intergenic Intergenic -7452 ENSMUSG00000105052.4 ENSMUSG00000105052 ENSMUST00000167847 Gm21655 processed_transcript Interval_116977 chr4 118594005 118594216 + 0 NA intron (ENSMUSG00000028730.14, intron 9 of 21) protein_coding-intron (ENSMUSG00000028730.14, intron 10 of 22) 26295 ENSMUSG00000028730.14 ENSMUSG00000028730 ENSMUST00000081921 Cfap57 protein_coding Interval_133059 chr5 149569544 149570610 + 0 NA intron (ENSMUSG00000029658.17, intron 7 of 22) protein_coding-intron (ENSMUSG00000029658.17, intron 7 of 22) -32047 ENSMUSG00000107132.1 ENSMUSG00000107132 ENSMUST00000202188 Gm15997 antisense Interval_90644 chr2 31641003 31642234 + 0 NA intron (ENSMUSG00000079466.2, intron 1 of 4) protein_coding-intron (ENSMUSG00000079466.2, intron 1 of 4) -1029 ENSMUSG00000085224.2 ENSMUSG00000085224 ENSMUST00000145389 Gm13425 antisense Interval_15898 chr10 59059572 59060536 + 0 NA intron (ENSMUSG00000037990.18, intron 4 of 9) protein_coding-intron (ENSMUSG00000037990.18, intron 4 of 9) 94511 ENSMUSG00000098653.1 ENSMUSG00000098653 ENSMUST00000183751 Gm27672 miRNA Interval_41804 chr12 119691021 119691430 + 0 NA Intergenic Intergenic 81307 ENSMUSG00000113091.1 ENSMUSG00000113091 ENSMUST00000223175 Gm9279 processed_pseudogene Interval_14823 chr10 40300653 40302956 + 0 NA promoter-TSS (ENSMUSG00000075232.6) protein_coding-promoter-TSS (ENSMUSG00000075232.6) 384 ENSMUSG00000075232.6 ENSMUSG00000075232 ENSMUST00000216993 Amd1 protein_coding Interval_102800 chr3 31145416 31146599 + 0 NA Intergenic Intergenic -3913 ENSMUSG00000037625.7 ENSMUSG00000037625 ENSMUST00000046174 Cldn11 protein_coding Interval_34390 chr12 3812349 3812804 + 0 NA intron (ENSMUSG00000020661.15, intron 1 of 22) protein_coding-intron (ENSMUSG00000020661.15, intron 1 of 22) 5416 ENSMUSG00000020661.15 ENSMUSG00000020661 ENSMUST00000172913 Dnmt3a protein_coding Interval_78803 chr18 20720230 20720757 + 0 NA intron (ENSMUSG00000056124.5, intron 2 of 8) protein_coding-intron (ENSMUSG00000056124.5, intron 2 of 8) 25911 ENSMUSG00000056124.5 ENSMUSG00000056124 ENSMUST00000070080 B4galt6 protein_coding Interval_60639 chr15 75867916 75868850 + 0 NA TTS (ENSMUSG00000022575.5) protein_coding-TTS (ENSMUSG00000022575.5) 1793 ENSMUSG00000022575.5 ENSMUSG00000022575 ENSMUST00000231170 Gsdmd protein_coding Interval_148719 chr7 84594261 84595144 + 0 NA TTS (ENSMUSG00000030630.16) protein_coding-TTS (ENSMUSG00000030630.16) 11202 ENSMUSG00000030630.16 ENSMUSG00000030630 ENSMUST00000134390 Fah protein_coding Interval_8017 chr1 135223521 135224539 + 0 NA Intergenic Intergenic -7965 ENSMUSG00000079139.4 ENSMUSG00000079139 ENSMUST00000110798 Gm4204 processed_pseudogene Interval_123620 chr5 33893664 33893906 + 0 NA intron (ENSMUSG00000057406.16, intron 12 of 12) protein_coding-intron (ENSMUSG00000057406.16, intron 20 of 20) 5186 ENSMUSG00000098830.1 ENSMUSG00000098830 ENSMUST00000183676 Mir7024 miRNA Interval_83486 chr18 87000512 87001462 + 0 NA Intergenic Intergenic -74069 ENSMUSG00000117908.1 ENSMUSG00000117908 ENSMUST00000236018 Gm5971 processed_pseudogene Interval_98352 chr2 151712616 151713306 + 0 NA TTS (ENSMUSG00000044364.5) protein_coding-TTS (ENSMUSG00000044364.5) 10650 ENSMUSG00000044364.5 ENSMUSG00000044364 ENSMUST00000109872 Tmem74b protein_coding Interval_98947 chr2 156260865 156261216 + 0 NA intron (ENSMUSG00000038116.16, intron 3 of 16) protein_coding-intron (ENSMUSG00000038116.16, intron 4 of 17) 38160 ENSMUSG00000038116.16 ENSMUSG00000038116 ENSMUST00000122814 Phf20 protein_coding Interval_150351 chr7 109804638 109805490 + 0 NA intron (ENSMUSG00000007279.14, intron 15 of 17) protein_coding-intron (ENSMUSG00000007279.14, intron 19 of 21) 3167 ENSMUSG00000007279.14 ENSMUSG00000007279 ENSMUST00000138946 Scube2 protein_coding Interval_109013 chr3 135031329 135031546 + 0 NA Intergenic Intergenic 59980 ENSMUSG00000104539.1 ENSMUSG00000104539 ENSMUST00000197626 Gm43035 processed_pseudogene Interval_41275 chr12 112337342 112338096 + 0 NA Intergenic Intergenic 12348 ENSMUSG00000103080.1 ENSMUSG00000103080 ENSMUST00000194990 Gm38123 TEC Interval_161876 chr8 123373209 123374628 + 0 NA promoter-TSS (ENSMUSG00000001472.17) protein_coding-promoter-TSS (ENSMUSG00000001472.17) 23667 ENSMUSG00000010154.7 ENSMUSG00000010154 ENSMUST00000212404 Spire2 protein_coding Interval_167310 chr9 67220348 67221092 + 0 NA TTS (ENSMUSG00000052698.15) protein_coding-TTS (ENSMUSG00000052698.15) 16006 ENSMUSG00000076379.2 ENSMUSG00000076379 ENSMUST00000102424 Mir190a miRNA Interval_136057 chr6 50376298 50377112 + 0 NA intron (ENSMUSG00000029822.15, intron 1 of 5) protein_coding-intron (ENSMUSG00000029822.15, intron 2 of 21) -24748 ENSMUSG00000029822.15 ENSMUSG00000029822 ENSMUST00000154333 Osbpl3 protein_coding Interval_34743 chr12 9251650 9252044 + 0 NA Intergenic Intergenic -119591 ENSMUSG00000113913.1 ENSMUSG00000113913 ENSMUST00000223136 Gm46323 lincRNA Interval_38650 chr12 80807292 80808188 + 0 NA intron (ENSMUSG00000021133.9, intron 1 of 6) protein_coding-intron (ENSMUSG00000021133.9, intron 1 of 5) 17230 ENSMUSG00000021133.9 ENSMUSG00000021133 ENSMUST00000219720 Susd6 protein_coding Interval_112393 chr4 41023740 41024559 + 0 NA intron (ENSMUSG00000028423.15, intron 4 of 5) protein_coding-intron (ENSMUSG00000028423.15, intron 22 of 23) 12161 ENSMUSG00000028427.13 ENSMUSG00000028427 ENSMUST00000149517 Aqp7 protein_coding Interval_437 chr1 5253125 5253473 + 0 NA Intergenic Intergenic 24038 ENSMUSG00000104352.1 ENSMUSG00000104352 ENSMUST00000193351 Gm7182 processed_pseudogene Interval_164318 chr9 35291093 35291697 + 0 NA Intergenic Intergenic -9560 ENSMUSG00000066771.2 ENSMUSG00000066771 ENSMUST00000091097 Gm5614 processed_pseudogene Interval_64715 chr16 14417051 14417504 + 0 NA intron (ENSMUSG00000023088.17, intron 4 of 4) protein_coding-intron (ENSMUSG00000023088.17, intron 10 of 30) 34470 ENSMUSG00000089106.1 ENSMUSG00000089106 ENSMUST00000158481 Gm23116 snRNA Interval_162535 chr9 4001703 4001871 + 0 NA Intergenic Intergenic -212135 ENSMUSG00000110691.1 ENSMUSG00000110691 ENSMUST00000211927 Gm5363 processed_pseudogene Interval_116258 chr4 109087780 109088096 + 0 NA promoter-TSS (ENSMUSG00000028559.17) protein_coding-promoter-TSS (ENSMUSG00000028559.17) 63732 ENSMUSG00000053510.12 ENSMUSG00000053510 ENSMUST00000125063 Nrd1 protein_coding Interval_24540 chr11 34207718 34208234 + 0 NA exon (ENSMUSG00000047861.2, exon 1 of 2) protein_coding-exon (ENSMUSG00000047861.2, exon 1 of 2) 113 ENSMUSG00000047861.2 ENSMUSG00000047861 ENSMUST00000060271 Foxi1 protein_coding Interval_155669 chr8 35961746 35961954 + 0 NA Intergenic Intergenic 15728 ENSMUSG00000080592.1 ENSMUSG00000080592 ENSMUST00000116942 Gm22030 miRNA Interval_129389 chr5 119679160 119683031 + 0 NA TTS (ENSMUSG00000018604.18) protein_coding-TTS (ENSMUSG00000018604.18) 10123 ENSMUSG00000086847.1 ENSMUSG00000086847 ENSMUST00000135385 Tbx3os2 lincRNA Interval_6437 chr1 108581799 108582113 + 0 NA Intergenic Intergenic 30558 ENSMUSG00000101231.1 ENSMUSG00000101231 ENSMUST00000185509 Gm28283 processed_pseudogene Interval_119871 chr4 140610627 140611900 + 0 NA exon (ENSMUSG00000040964.16, exon 3 of 28) protein_coding-exon (ENSMUSG00000040964.16, exon 3 of 28) 5802 ENSMUSG00000040964.16 ENSMUSG00000040964 ENSMUST00000154979 Arhgef10l protein_coding Interval_110809 chr4 8647083 8648739 + 0 NA Intergenic Intergenic 25671 ENSMUSG00000082122.1 ENSMUSG00000082122 ENSMUST00000120923 Gm11809 processed_pseudogene Interval_142299 chr6 140519067 140519945 + 0 NA intron (ENSMUSG00000030231.11, intron 1 of 10) protein_coding-intron (ENSMUSG00000030231.11, intron 3 of 30) -11457 ENSMUSG00000084477.1 ENSMUSG00000084477 ENSMUST00000122528 Gm25780 misc_RNA Interval_45885 chr13 58793906 58794719 + 0 NA intron (ENSMUSG00000114231.1, intron 1 of 3) lincRNA-intron (ENSMUSG00000114231.1, intron 1 of 3) 3136 ENSMUSG00000114231.1 ENSMUSG00000114231 ENSMUST00000223670 Gm40968 lincRNA Interval_139393 chr6 99782853 99783258 + 0 NA Intergenic Intergenic 12398 ENSMUSG00000108082.1 ENSMUSG00000108082 ENSMUST00000204852 Gm5314 processed_pseudogene Interval_96490 chr2 125062446 125063132 + 0 NA Intergenic Intergenic -17566 ENSMUSG00000035183.14 ENSMUSG00000035183 ENSMUST00000149963 Slc24a5 protein_coding Interval_132819 chr5 148084847 148085067 + 0 NA intron (ENSMUSG00000029651.16, intron 1 of 3) protein_coding-intron (ENSMUSG00000029651.16, intron 3 of 14) 99420 ENSMUSG00000066554.6 ENSMUSG00000066554 ENSMUST00000150411 Gm10167 processed_pseudogene Interval_97086 chr2 131142487 131143309 + 0 NA exon (ENSMUSG00000074793.10, exon 11 of 13) protein_coding-exon (ENSMUSG00000074793.10, exon 11 of 13) 9401 ENSMUSG00000079039.1 ENSMUSG00000079039 ENSMUST00000110225 Gm11037 protein_coding Interval_4564 chr1 75124306 75125584 + 0 NA TTS (ENSMUSG00000026205.8) protein_coding-TTS (ENSMUSG00000026205.8) 255 ENSMUSG00000026162.7 ENSMUSG00000026162 ENSMUST00000188033 Nhej1 protein_coding Interval_53212 chr14 55160651 55162057 + 0 NA TTS (ENSMUSG00000077492.1) snoRNA-TTS (ENSMUSG00000077492.1) 254 ENSMUSG00000077492.1 ENSMUSG00000077492 ENSMUST00000104304 Gm23596 snoRNA Interval_127367 chr5 103447063 103447331 + 0 NA intron (ENSMUSG00000034573.14, intron 1 of 17) protein_coding-intron (ENSMUSG00000034573.14, intron 1 of 47) -82369 ENSMUSG00000034573.14 ENSMUSG00000034573 ENSMUST00000200581 Ptpn13 protein_coding Interval_111075 chr4 11664907 11666337 + 0 NA Intergenic Intergenic -15123 ENSMUSG00000084046.1 ENSMUSG00000084046 ENSMUST00000118393 Gm11833 processed_pseudogene Interval_153087 chr7 141276846 141277751 + 0 NA promoter-TSS (ENSMUSG00000025497.15) protein_coding-promoter-TSS (ENSMUSG00000025497.15) 1833 ENSMUSG00000038580.13 ENSMUSG00000038580 ENSMUST00000167790 Sct protein_coding Interval_166124 chr9 56874385 56874610 + 0 NA intron (ENSMUSG00000032911.6, intron 1 of 4) protein_coding-intron (ENSMUSG00000032911.6, intron 1 of 9) -9818 ENSMUSG00000045620.7 ENSMUSG00000045620 ENSMUST00000215694 Odf3l1 protein_coding Interval_105928 chr3 90132404 90132913 + 0 NA intron (ENSMUSG00000027939.11, intron 9 of 39) protein_coding-intron (ENSMUSG00000027939.11, intron 9 of 39) 5891 ENSMUSG00000104649.1 ENSMUSG00000104649 ENSMUST00000198020 Gm43712 unprocessed_pseudogene Interval_11093 chr1 179308276 179308686 + 0 NA intron (ENSMUSG00000055067.15, intron 5 of 11) protein_coding-intron (ENSMUSG00000055067.15, intron 5 of 11) 209524 ENSMUSG00000055067.15 ENSMUSG00000055067 ENSMUST00000194237 Smyd3 protein_coding Interval_3750 chr1 62766821 62768554 + 0 NA intron (ENSMUSG00000025969.15, intron 10 of 16) protein_coding-intron (ENSMUSG00000025969.15, intron 10 of 15) -41615 ENSMUSG00000103032.1 ENSMUSG00000103032 ENSMUST00000192219 Gm37121 TEC Interval_44052 chr13 40554311 40555091 + 0 NA Intergenic Intergenic 21131 ENSMUSG00000114215.1 ENSMUSG00000114215 ENSMUST00000223887 Gm47038 processed_pseudogene Interval_159833 chr8 104182840 104183062 + 0 NA intron (ENSMUSG00000031872.14, intron 3 of 6) protein_coding-intron (ENSMUSG00000031872.14, intron 2 of 4) 1648 ENSMUSG00000074128.4 ENSMUSG00000074128 ENSMUST00000153288 Gm10631 antisense Interval_58924 chr15 40046426 40047103 + 0 NA intron (ENSMUSG00000115142.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000115142.1, intron 1 of 2) 1573 ENSMUSG00000115142.1 ENSMUSG00000115142 ENSMUST00000227360 Gm33251 lincRNA Interval_65646 chr16 24645211 24645464 + 0 NA intron (ENSMUSG00000033306.15, intron 5 of 6) protein_coding-intron (ENSMUSG00000033306.15, intron 5 of 12) 115943 ENSMUSG00000116875.1 ENSMUSG00000116875 ENSMUST00000231737 Morf4l1-ps1 processed_pseudogene Interval_4381 chr1 73586449 73586820 + 0 NA Intergenic Intergenic 57697 ENSMUSG00000100429.1 ENSMUSG00000100429 ENSMUST00000189178 Gm29186 lincRNA Interval_28139 chr11 73107491 73107775 + 0 NA intron (ENSMUSG00000005947.11, intron 2 of 25) protein_coding-intron (ENSMUSG00000005947.11, intron 2 of 30) 17050 ENSMUSG00000005947.11 ENSMUSG00000005947 ENSMUST00000006101 Itgae protein_coding Interval_81691 chr18 63499835 63500655 + 0 NA Intergenic Intergenic -7924 ENSMUSG00000089156.1 ENSMUSG00000089156 ENSMUST00000158531 Gm23581 snRNA Interval_174544 chrX 157512274 157513471 + 0 NA Intergenic Intergenic -27994 ENSMUSG00000082002.1 ENSMUSG00000082002 ENSMUST00000122274 Gm6568 processed_pseudogene Interval_45608 chr13 56221063 56222665 + 0 NA TTS (ENSMUSG00000097361.1) lincRNA-TTS (ENSMUSG00000097361.1) -18927 ENSMUSG00000114341.1 ENSMUSG00000114341 ENSMUST00000225940 Gm47104 processed_pseudogene Interval_165687 chr9 50957937 50958173 + 0 NA intron (ENSMUSG00000037112.16, intron 3 of 3) protein_coding-intron (ENSMUSG00000037112.16, intron 3 of 15) 50945 ENSMUSG00000037112.16 ENSMUSG00000037112 ENSMUST00000176327 Sik2 protein_coding Interval_28550 chr11 76661982 76662813 + 0 NA Intergenic Intergenic -10073 ENSMUSG00000044243.3 ENSMUSG00000044243 ENSMUST00000056184 Bhlha9 protein_coding Interval_101566 chr3 6422716 6423102 + 0 NA Intergenic Intergenic 28679 ENSMUSG00000098226.1 ENSMUSG00000098226 ENSMUST00000182730 Gm5272 processed_pseudogene Interval_15449 chr10 46776724 46777509 + 0 NA Intergenic Intergenic 61391 ENSMUSG00000065718.1 ENSMUSG00000065718 ENSMUST00000083784 Gm25650 snRNA Interval_22746 chr11 14376625 14376873 + 0 NA Intergenic Intergenic -110864 ENSMUSG00000080734.1 ENSMUSG00000080734 ENSMUST00000120786 Gm12006 processed_pseudogene Interval_46674 chr13 68597211 68599217 + 0 NA intron (ENSMUSG00000021534.8, intron 1 of 3) protein_coding-intron (ENSMUSG00000021534.8, intron 1 of 2) 775 ENSMUSG00000021534.8 ENSMUSG00000021534 ENSMUST00000222604 1700001L19Rik protein_coding Interval_167372 chr9 67883762 67884038 + 0 NA intron (ENSMUSG00000035284.10, intron 14 of 26) protein_coding-intron (ENSMUSG00000035284.10, intron 14 of 84) 43488 ENSMUSG00000035284.10 ENSMUSG00000035284 ENSMUST00000215524 Vps13c protein_coding Interval_73737 chr17 43084180 43084627 + 0 NA intron (ENSMUSG00000023915.5, intron 4 of 5) protein_coding-intron (ENSMUSG00000023915.5, intron 4 of 5) 67835 ENSMUSG00000023915.5 ENSMUSG00000023915 ENSMUST00000233482 Tnfrsf21 protein_coding Interval_32427 chr11 107484317 107485654 + 0 NA intron (ENSMUSG00000020720.13, intron 1 of 9) protein_coding-intron (ENSMUSG00000020720.13, intron 1 of 10) 3069 ENSMUSG00000086442.1 ENSMUSG00000086442 ENSMUST00000138702 Gm11722 sense_intronic Interval_173169 chrX 73767085 73767730 + 0 NA exon (ENSMUSG00000031385.14, exon 20 of 35) protein_coding-exon (ENSMUSG00000031385.14, exon 20 of 35) 1876 ENSMUSG00000031385.14 ENSMUSG00000031385 ENSMUST00000155096 Plxnb3 protein_coding Interval_134634 chr6 30070728 30071456 + 0 NA intron (ENSMUSG00000058440.14, intron 1 of 2) protein_coding-intron (ENSMUSG00000058440.14, intron 1 of 11) -18803 ENSMUSG00000058440.14 ENSMUSG00000058440 ENSMUST00000132866 Nrf1 protein_coding Interval_172323 chrX 13011995 13014765 + 0 NA Intergenic Intergenic -28671 ENSMUSG00000087424.1 ENSMUSG00000087424 ENSMUST00000130099 5730405O15Rik processed_transcript Interval_155572 chr8 34702997 34703760 + 0 NA Intergenic Intergenic -44009 ENSMUSG00000109846.1 ENSMUSG00000109846 ENSMUST00000210130 Gm45627 lincRNA Interval_105234 chr3 84048611 84049087 + 0 NA Intergenic Intergenic 14603 ENSMUSG00000103261.1 ENSMUSG00000103261 ENSMUST00000192340 Gm36981 TEC Interval_47365 chr13 81948835 81950287 + 0 NA Intergenic Intergenic -19874 ENSMUSG00000114634.1 ENSMUSG00000114634 ENSMUST00000224647 F830210D05Rik TEC Interval_44208 chr13 42129823 42130375 + 0 NA intron (ENSMUSG00000021366.8, intron 3 of 3) protein_coding-intron (ENSMUSG00000021366.8, intron 3 of 8) -34223 ENSMUSG00000021366.8 ENSMUSG00000021366 ENSMUST00000220801 Hivep1 protein_coding Interval_120276 chr4 145112153 145112399 + 0 NA intron (ENSMUSG00000020220.16, intron 17 of 51) protein_coding-intron (ENSMUSG00000020220.16, intron 34 of 67) 43210 ENSMUSG00000020220.16 ENSMUSG00000020220 ENSMUST00000132700 Vps13d protein_coding Interval_129762 chr5 122175331 122177462 + 0 NA Intergenic Intergenic 10799 ENSMUSG00000105742.1 ENSMUSG00000105742 ENSMUST00000199354 Gm42748 TEC Interval_7225 chr1 128006194 128006509 + 0 NA intron (ENSMUSG00000036086.16, intron 2 of 2) protein_coding-intron (ENSMUSG00000036086.16, intron 8 of 20) -21664 ENSMUSG00000104164.1 ENSMUSG00000104164 ENSMUST00000193744 Gm38248 TEC Interval_106459 chr3 96482205 96483536 + 0 NA Intergenic Intergenic -2291 ENSMUSG00000098392.1 ENSMUSG00000098392 ENSMUST00000183561 Gm28001 rRNA Interval_141074 chr6 124819387 124819587 + 0 NA promoter-TSS (ENSMUSG00000038429.10) protein_coding-promoter-TSS (ENSMUSG00000038429.10) -1594 ENSMUSG00000038429.10 ENSMUSG00000038429 ENSMUST00000153306 Usp5 protein_coding Interval_167731 chr9 72348416 72348673 + 0 NA intron (ENSMUSG00000038535.17, intron 21 of 22) protein_coding-intron (ENSMUSG00000038535.17, intron 19 of 21) -6531 ENSMUSG00000103133.1 ENSMUSG00000103133 ENSMUST00000194202 Gm37303 TEC Interval_13750 chr10 21805064 21806202 + 0 NA Intergenic Intergenic 39218 ENSMUSG00000097107.1 ENSMUSG00000097107 ENSMUST00000180731 Platr6 lincRNA Interval_73759 chr17 43337444 43338695 + 0 NA Intergenic Intergenic -22382 ENSMUSG00000056492.6 ENSMUSG00000056492 ENSMUST00000225004 Adgrf5 protein_coding Interval_120793 chr4 150664805 150665324 + 0 NA Intergenic Intergenic 13728 ENSMUSG00000085869.1 ENSMUSG00000085869 ENSMUST00000149065 Gm16079 lincRNA Interval_87460 chr19 52207142 52207679 + 0 NA Intergenic Intergenic -56887 ENSMUSG00000035804.5 ENSMUSG00000035804 ENSMUST00000039652 Ins1 protein_coding Interval_126379 chr5 87658348 87658731 + 0 NA Intergenic Intergenic -7669 ENSMUSG00000070702.9 ENSMUSG00000070702 ENSMUST00000197788 Csn1s1 protein_coding Interval_40489 chr12 105151045 105151754 + 0 NA intron (ENSMUSG00000060863.12, intron 1 of 3) protein_coding-intron (ENSMUSG00000060863.12, intron 1 of 3) 4380 ENSMUSG00000060863.12 ENSMUSG00000060863 ENSMUST00000081379 Tcl1b2 protein_coding Interval_71205 chr17 21124401 21124639 + 0 NA Intergenic Intergenic -4831 ENSMUSG00000096857.1 ENSMUSG00000096857 ENSMUST00000170486 Gm7732 processed_pseudogene Interval_172653 chrX 40639374 40639915 + 0 NA Intergenic Intergenic -21779 ENSMUSG00000083665.1 ENSMUSG00000083665 ENSMUST00000117210 Gm14575 processed_pseudogene Interval_49944 chr13 118603491 118604264 + 0 NA intron (ENSMUSG00000114613.1, intron 6 of 6) lincRNA-intron (ENSMUSG00000114613.1, intron 6 of 6) -4959 ENSMUSG00000114831.1 ENSMUSG00000114831 ENSMUST00000224199 Gm18361 processed_pseudogene Interval_50504 chr14 14294059 14295087 + 0 NA exon (ENSMUSG00000114768.1, exon 1 of 3) lincRNA-exon (ENSMUSG00000114768.1, exon 1 of 3) 103 ENSMUSG00000114768.1 ENSMUSG00000114768 ENSMUST00000224316 Gm48857 lincRNA Interval_5833 chr1 92347509 92349251 + 0 NA Intergenic Intergenic 23870 ENSMUSG00000101265.1 ENSMUSG00000101265 ENSMUST00000187370 Gm29099 lincRNA Interval_164608 chr9 39985608 39986065 + 0 NA Intergenic Intergenic -6277 ENSMUSG00000044292.4 ENSMUSG00000044292 ENSMUST00000057161 Olfr978 protein_coding Interval_89391 chr2 20374712 20375173 + 0 NA intron (ENSMUSG00000036617.17, intron 2 of 3) protein_coding-intron (ENSMUSG00000036617.17, intron 3 of 7) -50272 ENSMUSG00000091457.1 ENSMUSG00000091457 ENSMUST00000168048 Gm17171 antisense Interval_132879 chr5 148477816 148478046 + 0 NA Intergenic Intergenic 21093 ENSMUSG00000106956.1 ENSMUSG00000106956 ENSMUST00000202977 Gm19617 unprocessed_pseudogene Interval_86661 chr19 42377331 42377567 + 0 NA intron (ENSMUSG00000042401.8, intron 2 of 14) protein_coding-intron (ENSMUSG00000042401.8, intron 2 of 14) 1652 ENSMUSG00000117706.1 ENSMUSG00000117706 ENSMUST00000237236 Gm50184 processed_pseudogene Interval_112545 chr4 43020301 43021666 + 0 NA exon (ENSMUSG00000028454.16, exon 7 of 11) protein_coding-exon (ENSMUSG00000028454.16, exon 7 of 11) -1277 ENSMUSG00000028454.16 ENSMUSG00000028454 ENSMUST00000131506 Pigo protein_coding Interval_7385 chr1 130763860 130764422 + 0 NA Intergenic Intergenic -2243 ENSMUSG00000100106.1 ENSMUSG00000100106 ENSMUST00000189150 Gm28856 lincRNA Interval_17531 chr10 77566601 77567091 + 0 NA Intergenic Intergenic -14877 ENSMUSG00000009291.13 ENSMUSG00000009291 ENSMUST00000167006 Pttg1ip protein_coding Interval_32423 chr11 107462376 107464353 + 0 NA intron (ENSMUSG00000040430.18, intron 1 of 9) protein_coding-intron (ENSMUSG00000040430.18, intron 1 of 9) -16164 ENSMUSG00000020720.13 ENSMUSG00000020720 ENSMUST00000106750 Psmd12 protein_coding Interval_5922 chr1 93237771 93238410 + 0 NA intron (ENSMUSG00000047793.13, intron 1 of 22) protein_coding-intron (ENSMUSG00000047793.13, intron 1 of 30) 2239 ENSMUSG00000047793.13 ENSMUSG00000047793 ENSMUST00000165883 Sned1 protein_coding Interval_5924 chr1 93251110 93251352 + 0 NA intron (ENSMUSG00000047793.13, intron 1 of 22) protein_coding-intron (ENSMUSG00000047793.13, intron 1 of 30) 15380 ENSMUSG00000047793.13 ENSMUSG00000047793 ENSMUST00000165883 Sned1 protein_coding Interval_4315 chr1 72672037 72673283 + 0 NA intron (ENSMUSG00000039342.5, intron 9 of 22) protein_coding-intron (ENSMUSG00000039342.5, intron 10 of 23) -20204 ENSMUSG00000110487.1 ENSMUSG00000110487 ENSMUST00000211962 Gm18035 processed_pseudogene Interval_105424 chr3 86148847 86149894 + 0 NA Intergenic Intergenic -4001 ENSMUSG00000102218.1 ENSMUSG00000102218 ENSMUST00000193167 Gm37493 processed_pseudogene Interval_172451 chrX 20616822 20618417 + 0 NA promoter-TSS (ENSMUSG00000031060.16) protein_coding-promoter-TSS (ENSMUSG00000031060.16) 0 ENSMUSG00000031059.9 ENSMUSG00000031059 ENSMUST00000116621 Ndufb11 protein_coding Interval_84700 chr19 15516691 15517700 + 0 NA Intergenic Intergenic -162809 ENSMUSG00000094850.1 ENSMUSG00000094850 ENSMUST00000083389 Gm24319 snRNA Interval_11907 chr1 186966628 186968486 + 0 NA promoter-TSS (ENSMUSG00000104312.1) antisense-promoter-TSS (ENSMUSG00000104312.1) 46 ENSMUSG00000104312.1 ENSMUSG00000104312 ENSMUST00000191895 Gm37912 antisense Interval_250 KZ289068.1 309796 310619 + 0 NA NA NA NA NA Interval_42290 chr13 11831336 11831808 + 0 NA intron (ENSMUSG00000021313.16, intron 12 of 24) protein_coding-intron (ENSMUSG00000021313.16, intron 13 of 104) -9838 ENSMUSG00000113269.1 ENSMUSG00000113269 ENSMUST00000221204 Gm47494 TEC Interval_45489 chr13 55420158 55421393 + 0 NA exon (ENSMUSG00000021492.15, exon 10 of 14) protein_coding-exon (ENSMUSG00000021492.15, exon 10 of 14) -5543 ENSMUSG00000044444.6 ENSMUSG00000044444 ENSMUST00000054146 Pfn3 protein_coding Interval_114536 chr4 82369248 82369524 + 0 NA intron (ENSMUSG00000008575.17, intron 3 of 4) protein_coding-intron (ENSMUSG00000008575.17, intron 3 of 11) -70024 ENSMUSG00000084595.1 ENSMUSG00000084595 ENSMUST00000122646 n-R5s188 rRNA Interval_70858 chr17 15440437 15441355 + 0 NA Intergenic Intergenic -5931 ENSMUSG00000116718.1 ENSMUSG00000116718 ENSMUST00000231947 Gm49668 lincRNA Interval_163186 chr9 17508857 17509422 + 0 NA Intergenic Intergenic -6430 ENSMUSG00000111405.1 ENSMUSG00000111405 ENSMUST00000214774 Gm2594 processed_pseudogene Interval_25758 chr11 51539295 51540273 + 0 NA intron (ENSMUSG00000063564.13, intron 5 of 28) protein_coding-intron (ENSMUSG00000063564.13, intron 5 of 28) -34648 ENSMUSG00000063564.13 ENSMUSG00000063564 ENSMUST00000151098 Col23a1 protein_coding Interval_109217 chr3 137968465 137968689 + 0 NA intron (ENSMUSG00000028159.14, intron 1 of 8) protein_coding-intron (ENSMUSG00000028159.14, intron 1 of 8) -13864 ENSMUSG00000028159.14 ENSMUSG00000028159 ENSMUST00000199541 Dapp1 protein_coding Interval_97429 chr2 136139307 136139608 + 0 NA intron (ENSMUSG00000085383.1, intron 1 of 1) protein_coding-intron (ENSMUSG00000039913.12, intron 4 of 10) 2451 ENSMUSG00000085383.1 ENSMUSG00000085383 ENSMUST00000137802 Gm14218 antisense Interval_31356 chr11 100232062 100232815 + 0 NA promoter-TSS (ENSMUSG00000084257.1) unprocessed_pseudogene-promoter-TSS (ENSMUSG00000084257.1) -360 ENSMUSG00000084257.1 ENSMUSG00000084257 ENSMUST00000121423 Gm11597 unprocessed_pseudogene Interval_165169 chr9 44980104 44980884 + 0 NA promoter-TSS (ENSMUSG00000002033.14) protein_coding-promoter-TSS (ENSMUSG00000002033.14) -63 ENSMUSG00000002033.14 ENSMUSG00000002033 ENSMUST00000160886 Cd3g protein_coding Interval_146293 chr7 45172177 45173970 + 0 NA promoter-TSS (ENSMUSG00000106470.1) miRNA-promoter-TSS (ENSMUSG00000106470.1) -230 ENSMUSG00000106470.1 ENSMUSG00000106470 ENSMUST00000197423 Mir7055 miRNA Interval_93875 chr2 77863437 77864397 + 0 NA Intergenic Intergenic 17550 ENSMUSG00000087353.1 ENSMUSG00000087353 ENSMUST00000154480 Gm13727 processed_transcript Interval_37472 chr12 69196680 69199730 + 0 NA exon (ENSMUSG00000020973.7, exon 1 of 3) protein_coding-exon (ENSMUSG00000020973.7, exon 1 of 3) 224 ENSMUSG00000020973.7 ENSMUSG00000020973 ENSMUST00000021356 Dnaaf2 protein_coding Interval_149033 chr7 92520537 92521094 + 0 NA Intergenic Intergenic -40334 ENSMUSG00000030613.13 ENSMUSG00000030613 ENSMUST00000085017 Ccdc90b protein_coding Interval_31536 chr11 101233722 101234945 + 0 NA Intergenic Intergenic -12234 ENSMUSG00000001240.13 ENSMUSG00000001240 ENSMUST00000107282 Ramp2 protein_coding Interval_77616 chr17 93142584 93142805 + 0 NA Intergenic Intergenic -25818 ENSMUSG00000117591.1 ENSMUSG00000117591 ENSMUST00000234088 Gm49997 processed_pseudogene Interval_96932 chr2 129650260 129650746 + 0 NA Intergenic Intergenic 49341 ENSMUSG00000027400.11 ENSMUSG00000027400 ENSMUST00000152113 Pdyn protein_coding Interval_95857 chr2 117312522 117312732 + 0 NA intron (ENSMUSG00000027347.18, intron 2 of 16) protein_coding-intron (ENSMUSG00000027347.18, intron 2 of 16) 30250 ENSMUSG00000027347.18 ENSMUSG00000027347 ENSMUST00000110898 Rasgrp1 protein_coding Interval_48668 chr13 101005597 101007757 + 0 NA Intergenic Intergenic 7309 ENSMUSG00000098005.1 ENSMUSG00000098005 ENSMUST00000182472 Gm6114 processed_pseudogene Interval_164108 chr9 31552247 31552773 + 0 NA Intergenic Intergenic -7099 ENSMUSG00000111853.1 ENSMUSG00000111853 ENSMUST00000216695 Gm31408 lincRNA Interval_23062 chr11 19549109 19549412 + 0 NA Intergenic Intergenic 78801 ENSMUSG00000086911.1 ENSMUSG00000086911 ENSMUST00000146531 Gm12027 lincRNA Interval_87283 chr19 47374410 47374959 + 0 NA intron (ENSMUSG00000053617.12, intron 2 of 4) protein_coding-intron (ENSMUSG00000053617.12, intron 3 of 14) 35675 ENSMUSG00000053617.12 ENSMUSG00000053617 ENSMUST00000237828 Sh3pxd2a protein_coding Interval_50584 chr14 16057374 16057675 + 0 NA Intergenic Intergenic -20327 ENSMUSG00000114390.1 ENSMUSG00000114390 ENSMUST00000223757 1700062C10Rik lincRNA Interval_129754 chr5 122130784 122132379 + 0 NA intron (ENSMUSG00000043036.13, intron 1 of 12) protein_coding-intron (ENSMUSG00000043036.13, intron 2 of 12) -20468 ENSMUSG00000043036.13 ENSMUSG00000043036 ENSMUST00000196608 Ccdc63 protein_coding Interval_13677 chr10 20948342 20948544 + 0 NA Intergenic Intergenic -69470 ENSMUSG00000111177.1 ENSMUSG00000111177 ENSMUST00000213102 Rps2-ps3 processed_pseudogene Interval_95718 chr2 114853878 114854346 + 0 NA promoter-TSS (ENSMUSG00000085222.1) lincRNA-promoter-TSS (ENSMUSG00000085222.1) 19 ENSMUSG00000085222.1 ENSMUSG00000085222 ENSMUST00000144368 Gm13974 lincRNA Interval_67204 chr16 44394470 44395299 + 0 NA promoter-TSS (ENSMUSG00000071550.14) protein_coding-promoter-TSS (ENSMUSG00000071550.14) 88 ENSMUSG00000071550.14 ENSMUSG00000071550 ENSMUST00000127303 Cfap44 protein_coding Interval_132872 chr5 148428700 148428931 + 0 NA Intergenic Intergenic -28023 ENSMUSG00000106956.1 ENSMUSG00000106956 ENSMUST00000202977 Gm19617 unprocessed_pseudogene Interval_25500 chr11 49267534 49267943 + 0 NA Intergenic Intergenic -10566 ENSMUSG00000059864.2 ENSMUSG00000059864 ENSMUST00000078932 Olfr1393 protein_coding Interval_19970 chr10 111582595 111584458 + 0 NA Intergenic Intergenic 10747 ENSMUSG00000097082.1 ENSMUSG00000097082 ENSMUST00000181547 4933440J02Rik lincRNA Interval_50127 chr14 8151009 8151714 + 0 NA intron (ENSMUSG00000033885.15, intron 14 of 17) protein_coding-intron (ENSMUSG00000033885.15, intron 14 of 17) 15735 ENSMUSG00000021748.9 ENSMUSG00000021748 ENSMUST00000224690 Pdhb protein_coding Interval_21009 chr10 123207351 123207560 + 0 NA Intergenic Intergenic -10460 ENSMUSG00000020124.10 ENSMUSG00000020124 ENSMUST00000219619 Usp15 protein_coding Interval_61602 chr15 82906712 82907270 + 0 NA intron (ENSMUSG00000041852.15, intron 1 of 1) protein_coding-intron (ENSMUSG00000041852.15, intron 1 of 4) -7180 ENSMUSG00000041852.15 ENSMUSG00000041852 ENSMUST00000229439 Tcf20 protein_coding Interval_20850 chr10 121505125 121505866 + 0 NA intron (ENSMUSG00000111926.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000111926.1, intron 1 of 1) 144 ENSMUSG00000111926.1 ENSMUSG00000111926 ENSMUST00000219800 Gm46204 lincRNA Interval_38579 chr12 80241800 80242012 + 0 NA intron (ENSMUSG00000015143.15, intron 1 of 20) protein_coding-intron (ENSMUSG00000015143.15, intron 1 of 20) 16878 ENSMUSG00000015143.15 ENSMUSG00000015143 ENSMUST00000220351 Actn1 protein_coding Interval_163219 chr9 18431612 18431932 + 0 NA intron (ENSMUSG00000047508.9, intron 1 of 2) protein_coding-intron (ENSMUSG00000047508.9, intron 1 of 2) 1118 ENSMUSG00000047508.9 ENSMUSG00000047508 ENSMUST00000051008 Mbd3l2 protein_coding Interval_130071 chr5 124075764 124077812 + 0 NA TTS (ENSMUSG00000106261.1) lincRNA-TTS (ENSMUSG00000106261.1) 2343 ENSMUSG00000029408.13 ENSMUSG00000029408 ENSMUST00000126970 Abcb9 protein_coding Interval_14656 chr10 38062803 38063185 + 0 NA Intergenic Intergenic 59067 ENSMUSG00000111488.1 ENSMUSG00000111488 ENSMUST00000213538 Gm31378 lincRNA Interval_11940 chr1 187348431 187349086 + 0 NA exon (ENSMUSG00000039210.16, exon 10 of 10) protein_coding-exon (ENSMUSG00000039210.16, exon 10 of 10) 28711 ENSMUSG00000104245.1 ENSMUSG00000104245 ENSMUST00000192285 Gm38155 antisense Interval_174490 chrX 153332833 153333080 + 0 NA intron (ENSMUSG00000041649.13, intron 2 of 6) protein_coding-intron (ENSMUSG00000041649.13, intron 2 of 6) 71114 ENSMUSG00000080743.2 ENSMUSG00000080743 ENSMUST00000122032 Gm7150 processed_pseudogene Interval_100244 chr2 167904721 167905998 + 0 NA Intergenic Intergenic -27013 ENSMUSG00000027540.13 ENSMUSG00000027540 ENSMUST00000142717 Ptpn1 protein_coding Interval_34945 chr12 14896685 14896875 + 0 NA Intergenic Intergenic 18285 ENSMUSG00000064386.1 ENSMUSG00000064386 ENSMUST00000082452 Gm26449 snRNA Interval_108197 chr3 122428308 122428637 + 0 NA intron (ENSMUSG00000104574.1, intron 1 of 1) protein_coding-intron (ENSMUSG00000028121.8, intron 2 of 11) 8715 ENSMUSG00000028121.8 ENSMUSG00000028121 ENSMUST00000197959 Bcar3 protein_coding Interval_104025 chr3 57489844 57490922 + 0 NA intron (ENSMUSG00000027803.14, intron 3 of 6) protein_coding-intron (ENSMUSG00000027803.14, intron 3 of 6) -37849 ENSMUSG00000083538.1 ENSMUSG00000083538 ENSMUST00000120831 Gm16016 processed_pseudogene Interval_70379 chr17 9566912 9567302 + 0 NA intron (ENSMUSG00000117143.1, intron 2 of 2) lincRNA-intron (ENSMUSG00000117143.1, intron 2 of 2) 17416 ENSMUSG00000117143.1 ENSMUSG00000117143 ENSMUST00000232756 Gm49807 lincRNA Interval_171028 chr9 113803830 113804773 + 0 NA intron (ENSMUSG00000033392.16, intron 1 of 4) protein_coding-intron (ENSMUSG00000033392.16, intron 7 of 15) -28003 ENSMUSG00000087992.1 ENSMUSG00000087992 ENSMUST00000157367 Gm25059 snoRNA Interval_77949 chr18 6012919 6014453 + 0 NA TTS (ENSMUSG00000117548.1) TEC-TTS (ENSMUSG00000117548.1) 1335 ENSMUSG00000117548.1 ENSMUSG00000117548 ENSMUST00000234469 Gm41662 TEC Interval_65033 chr16 18590411 18592228 + 0 NA promoter-TSS (ENSMUSG00000009097.10) protein_coding-promoter-TSS (ENSMUSG00000009097.10) -673 ENSMUSG00000075335.3 ENSMUSG00000075335 ENSMUST00000156827 4930588K23Rik lincRNA Interval_89894 chr2 26284922 26286357 + 0 NA intron (ENSMUSG00000048038.8, intron 4 of 26) protein_coding-intron (ENSMUSG00000048038.8, intron 4 of 9) 8799 ENSMUSG00000048038.8 ENSMUSG00000048038 ENSMUST00000057224 Ccdc187 protein_coding Interval_9928 chr1 164158118 164158573 + 0 NA intron (ENSMUSG00000026579.8, intron 2 of 24) protein_coding-intron (ENSMUSG00000026579.8, intron 2 of 24) -6128 ENSMUSG00000086593.2 ENSMUSG00000086593 ENSMUST00000133341 Gm16548 lincRNA Interval_35908 chr12 31835708 31837082 + 0 NA intron (ENSMUSG00000035933.5, intron 12 of 22) protein_coding-intron (ENSMUSG00000035933.5, intron 12 of 22) 13231 ENSMUSG00000111987.1 ENSMUSG00000111987 ENSMUST00000220137 Gm48809 antisense Interval_132109 chr5 142807246 142807964 + 0 NA intron (ENSMUSG00000039477.16, intron 2 of 2) protein_coding-intron (ENSMUSG00000039477.16, intron 2 of 15) -41583 ENSMUSG00000039477.16 ENSMUSG00000039477 ENSMUST00000198181 Tnrc18 protein_coding Interval_26507 chr11 58214521 58215337 + 0 NA promoter-TSS (ENSMUSG00000069874.7) protein_coding-promoter-TSS (ENSMUSG00000069874.7) -79 ENSMUSG00000069874.7 ENSMUSG00000069874 ENSMUST00000108836 Irgm2 protein_coding Interval_82871 chr18 77619716 77621425 + 0 NA Intergenic Intergenic -62044 ENSMUSG00000077593.1 ENSMUSG00000077593 ENSMUST00000104405 Gm26014 snoRNA Interval_47913 chr13 94330135 94330378 + 0 NA Intergenic Intergenic 28667 ENSMUSG00000042857.3 ENSMUSG00000042857 ENSMUST00000221110 Gm9776 bidirectional_promoter_lncRNA Interval_150148 chr7 107392513 107392971 + 0 NA intron (ENSMUSG00000062542.11, intron 1 of 1) protein_coding-intron (ENSMUSG00000062542.11, intron 1 of 6) 26670 ENSMUSG00000109078.1 ENSMUSG00000109078 ENSMUST00000208516 Gm19033 processed_pseudogene Interval_33049 chr11 113872824 113873497 + 0 NA exon (ENSMUSG00000041592.16, exon 7 of 45) protein_coding-exon (ENSMUSG00000041592.16, exon 7 of 45) -62737 ENSMUSG00000041592.16 ENSMUSG00000041592 ENSMUST00000144301 Sdk2 protein_coding Interval_169455 chr9 97518360 97518848 + 0 NA intron (ENSMUSG00000032452.12, intron 8 of 16) protein_coding-intron (ENSMUSG00000032452.12, intron 8 of 17) -78977 ENSMUSG00000077208.1 ENSMUSG00000077208 ENSMUST00000104020 Gm25607 snoRNA Interval_77633 chr17 93387520 93388018 + 0 NA Intergenic Intergenic 3929 ENSMUSG00000117368.1 ENSMUSG00000117368 ENSMUST00000234726 Gm50001 processed_pseudogene Interval_84946 chr19 19577092 19577315 + 0 NA Intergenic Intergenic 299360 ENSMUSG00000118167.1 ENSMUSG00000118167 ENSMUST00000235148 Gm50216 lincRNA Interval_123310 chr5 31302043 31302288 + 0 NA exon (ENSMUSG00000059434.9, exon 8 of 19) protein_coding-exon (ENSMUSG00000059434.9, exon 8 of 19) 4611 ENSMUSG00000059434.9 ENSMUSG00000059434 ENSMUST00000202242 Gckr protein_coding Interval_108968 chr3 133672855 133673173 + 0 NA Intergenic Intergenic -9623 ENSMUSG00000105952.1 ENSMUSG00000105952 ENSMUST00000197904 Gm40153 lincRNA Interval_37139 chr12 58916155 58916834 + 0 NA Intergenic Intergenic -4173 ENSMUSG00000112531.1 ENSMUSG00000112531 ENSMUST00000218825 Gm2649 processed_pseudogene Interval_77770 chr18 3382708 3383745 + 0 NA promoter-TSS (ENSMUSG00000024231.15) protein_coding-promoter-TSS (ENSMUSG00000024231.15) -6 ENSMUSG00000024231.15 ENSMUSG00000024231 ENSMUST00000159443 Cul2 protein_coding Interval_95921 chr2 118426545 118427327 + 0 NA intron (ENSMUSG00000005102.13, intron 10 of 10) protein_coding-intron (ENSMUSG00000005102.13, intron 10 of 38) -30224 ENSMUSG00000005102.13 ENSMUSG00000005102 ENSMUST00000125281 Eif2ak4 protein_coding Interval_38331 chr12 77316972 77317202 + 0 NA intron (ENSMUSG00000021065.16, intron 3 of 12) protein_coding-intron (ENSMUSG00000021065.16, intron 2 of 11) -71777 ENSMUSG00000021065.16 ENSMUSG00000021065 ENSMUST00000218851 Fut8 protein_coding Interval_76476 chr17 80460310 80461746 + 0 NA intron (ENSMUSG00000024241.7, intron 1 of 19) protein_coding-intron (ENSMUSG00000024241.7, intron 1 of 21) 19425 ENSMUSG00000024241.7 ENSMUSG00000024241 ENSMUST00000234841 Sos1 protein_coding Interval_106190 chr3 94472312 94473159 + 0 NA intron (ENSMUSG00000028139.5, intron 1 of 2) protein_coding-intron (ENSMUSG00000028139.5, intron 3 of 6) 187 ENSMUSG00000028139.5 ENSMUSG00000028139 ENSMUST00000184619 Riiad1 protein_coding Interval_137963 chr6 83762570 83763741 + 0 NA promoter-TSS (ENSMUSG00000099354.6) antisense-promoter-TSS (ENSMUSG00000099354.6) -290 ENSMUSG00000099354.6 ENSMUSG00000099354 ENSMUST00000190077 1700124L16Rik antisense Interval_79001 chr18 23853216 23854135 + 0 NA exon (ENSMUSG00000024277.14, exon 3 of 7) protein_coding-exon (ENSMUSG00000024277.14, exon 3 of 7) -36304 ENSMUSG00000089290.1 ENSMUSG00000089290 ENSMUST00000158665 Gm23207 snRNA Interval_105559 chr3 87755829 87756737 + 0 NA TTS (ENSMUSG00000028073.15) protein_coding-TTS (ENSMUSG00000028073.15) 12683 ENSMUSG00000028073.15 ENSMUSG00000028073 ENSMUST00000173184 Pear1 protein_coding Interval_114495 chr4 81237809 81238197 + 0 NA Intergenic Intergenic 100401 ENSMUSG00000077607.1 ENSMUSG00000077607 ENSMUST00000104419 Gm25803 snoRNA Interval_76318 chr17 78999769 79000438 + 0 NA intron (ENSMUSG00000024070.15, intron 2 of 18) protein_coding-intron (ENSMUSG00000024070.15, intron 1 of 17) 20713 ENSMUSG00000024070.15 ENSMUSG00000024070 ENSMUST00000130070 Prkd3 protein_coding Interval_63118 chr15 99178964 99180151 + 0 NA intron (ENSMUSG00000051934.5, intron 6 of 9) protein_coding-intron (ENSMUSG00000051934.5, intron 6 of 12) -4620 ENSMUSG00000087991.1 ENSMUSG00000087991 ENSMUST00000157366 Gm25057 misc_RNA Interval_169448 chr9 97437187 97437753 + 0 NA Intergenic Intergenic 2157 ENSMUSG00000077208.1 ENSMUSG00000077208 ENSMUST00000104020 Gm25607 snoRNA Interval_135351 chr6 38564224 38564403 + 0 NA intron (ENSMUSG00000029823.16, intron 1 of 2) protein_coding-intron (ENSMUSG00000029823.16, intron 1 of 9) 12979 ENSMUSG00000029823.16 ENSMUSG00000029823 ENSMUST00000160430 Luc7l2 protein_coding Interval_164255 chr9 34550846 34551073 + 0 NA intron (ENSMUSG00000032036.15, intron 1 of 15) protein_coding-intron (ENSMUSG00000032036.15, intron 1 of 16) 29204 ENSMUSG00000103552.1 ENSMUSG00000103552 ENSMUST00000194358 Gm38217 TEC Interval_46454 chr13 66290990 66291923 + 0 NA intron (ENSMUSG00000114616.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000114616.1, intron 1 of 2) -7389 ENSMUSG00000114550.1 ENSMUSG00000114550 ENSMUST00000224096 Gm46426 processed_pseudogene Interval_97407 chr2 135843480 135844307 + 0 NA intron (ENSMUSG00000039943.16, intron 2 of 36) protein_coding-intron (ENSMUSG00000039943.16, intron 1 of 35) -30966 ENSMUSG00000086928.1 ENSMUSG00000086928 ENSMUST00000140949 Gm14210 lincRNA Interval_161800 chr8 122876374 122877104 + 0 NA intron (ENSMUSG00000110440.1, intron 1 of 1) protein_coding-intron (ENSMUSG00000092329.1, intron 1 of 15) 6190 ENSMUSG00000110440.1 ENSMUSG00000110440 ENSMUST00000212728 Gm45894 antisense Interval_129707 chr5 121883734 121884098 + 0 NA TTS (ENSMUSG00000042589.18) protein_coding-TTS (ENSMUSG00000042589.18) -17853 ENSMUSG00000042589.18 ENSMUSG00000042589 ENSMUST00000125267 Cux2 protein_coding Interval_114444 chr4 77499646 77500171 + 0 NA intron (ENSMUSG00000028399.18, intron 4 of 6) protein_coding-intron (ENSMUSG00000028399.18, intron 4 of 14) -541410 ENSMUSG00000092829.1 ENSMUSG00000092829 ENSMUST00000175088 Gm23159 miRNA Interval_118621 chr4 132817199 132817454 + 0 NA Intergenic Intergenic -15072 ENSMUSG00000081647.1 ENSMUSG00000081647 ENSMUST00000121181 Gm13022 processed_pseudogene Interval_89544 chr2 22275366 22275751 + 0 NA intron (ENSMUSG00000025716.14, intron 4 of 17) protein_coding-intron (ENSMUSG00000025716.14, intron 5 of 33) 34501 ENSMUSG00000025716.14 ENSMUSG00000025716 ENSMUST00000149423 Myo3a protein_coding Interval_961 chr1 13490736 13490935 + 0 NA Intergenic Intergenic -83180 ENSMUSG00000101171.1 ENSMUSG00000101171 ENSMUST00000187246 Gm7593 processed_pseudogene Interval_11189 chr1 179983822 179984717 + 0 NA intron (ENSMUSG00000026490.18, intron 1 of 5) protein_coding-intron (ENSMUSG00000026490.18, intron 1 of 34) 23159 ENSMUSG00000026490.18 ENSMUSG00000026490 ENSMUST00000129754 Cdc42bpa protein_coding Interval_31142 chr11 98391979 98392856 + 0 NA promoter-TSS (ENSMUSG00000038208.13) protein_coding-promoter-TSS (ENSMUSG00000038208.13) 5705 ENSMUSG00000038216.7 ENSMUSG00000038216 ENSMUST00000124527 Pnmt protein_coding Interval_93941 chr2 79653463 79653675 + 0 NA intron (ENSMUSG00000027007.16, intron 7 of 15) protein_coding-intron (ENSMUSG00000027007.16, intron 9 of 16) 14387 ENSMUSG00000027007.16 ENSMUSG00000027007 ENSMUST00000133266 Itprid2 protein_coding Interval_163931 chr9 29055711 29056208 + 0 NA intron (ENSMUSG00000059974.10, intron 2 of 4) protein_coding-intron (ENSMUSG00000059974.10, intron 4 of 7) -3840 ENSMUSG00000085449.1 ENSMUSG00000085449 ENSMUST00000132097 Gm15520 antisense Interval_153519 chr8 3023932 3024169 + 0 NA Intergenic Intergenic -32244 ENSMUSG00000108612.2 ENSMUSG00000108612 ENSMUST00000206119 Gm44634 unprocessed_pseudogene Interval_121244 chr4 154341649 154342489 + 0 NA exon (ENSMUSG00000039410.16, exon 9 of 17) protein_coding-exon (ENSMUSG00000039410.16, exon 9 of 17) 5942 ENSMUSG00000097871.1 ENSMUSG00000097871 ENSMUST00000181143 B230104I21Rik lincRNA Interval_27953 chr11 71432839 71433133 + 0 NA intron (ENSMUSG00000085230.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000085230.1, intron 1 of 1) 3194 ENSMUSG00000085230.1 ENSMUSG00000085230 ENSMUST00000152249 Gm16013 lincRNA Interval_98796 chr2 155057377 155058280 + 0 NA Intergenic Intergenic 16619 ENSMUSG00000027597.15 ENSMUSG00000027597 ENSMUST00000146367 Ahcy protein_coding Interval_123211 chr5 30673311 30673538 + 0 NA exon (ENSMUSG00000029177.9, exon 6 of 7) protein_coding-exon (ENSMUSG00000029177.9, exon 6 of 7) 6426 ENSMUSG00000029177.9 ENSMUSG00000029177 ENSMUST00000134372 Cenpa protein_coding Interval_83159 chr18 82412419 82413052 + 0 NA Intergenic Intergenic -1630 ENSMUSG00000118256.1 ENSMUSG00000118256 ENSMUST00000237372 Gm50303 processed_pseudogene Interval_58086 chr15 27773668 27774460 + 0 NA exon (ENSMUSG00000022263.10, exon 35 of 57) protein_coding-exon (ENSMUSG00000022263.10, exon 35 of 57) -82243 ENSMUSG00000115641.1 ENSMUSG00000115641 ENSMUST00000228765 Gm9891 TEC Interval_139890 chr6 112407251 112407477 + 0 NA Intergenic Intergenic -13547 ENSMUSG00000107541.1 ENSMUSG00000107541 ENSMUST00000203696 Gm44336 processed_pseudogene Interval_164813 chr9 42113001 42113471 + 0 NA intron (ENSMUSG00000049313.8, intron 1 of 47) protein_coding-intron (ENSMUSG00000049313.8, intron 1 of 47) -29125 ENSMUSG00000111167.1 ENSMUSG00000111167 ENSMUST00000217090 Gm39321 lincRNA Interval_118313 chr4 130240255 130241501 + 0 NA Intergenic Intergenic -31022 ENSMUSG00000023120.9 ENSMUSG00000023120 ENSMUST00000023884 Ldc1 protein_coding Interval_40130 chr12 101831206 101832580 + 0 NA Intergenic Intergenic -13425 ENSMUSG00000021186.9 ENSMUSG00000021186 ENSMUST00000221373 Fbln5 protein_coding Interval_169642 chr9 99660715 99661060 + 0 NA intron (ENSMUSG00000037784.14, intron 11 of 15) protein_coding-intron (ENSMUSG00000037784.14, intron 11 of 15) 10671 ENSMUSG00000037784.14 ENSMUSG00000037784 ENSMUST00000190893 Dzip1l protein_coding Interval_78596 chr18 15011045 15012086 + 0 NA exon (ENSMUSG00000071867.5, exon 1 of 1) processed_pseudogene-exon (ENSMUSG00000071867.5, exon 1 of 1) 319 ENSMUSG00000071867.5 ENSMUSG00000071867 ENSMUST00000096579 Mrpl27-ps processed_pseudogene Interval_11045 chr1 178827124 178827577 + 0 NA intron (ENSMUSG00000026494.12, intron 5 of 14) protein_coding-intron (ENSMUSG00000026494.12, intron 2 of 11) 71542 ENSMUSG00000102922.1 ENSMUSG00000102922 ENSMUST00000192621 Gm34176 processed_pseudogene Interval_41585 chr12 116568976 116569895 + 0 NA intron (ENSMUSG00000056553.14, intron 1 of 4) protein_coding-intron (ENSMUSG00000056553.14, intron 1 of 22) -27818 ENSMUSG00000101814.1 ENSMUSG00000101814 ENSMUST00000186869 Gm17807 processed_pseudogene Interval_93425 chr2 72978553 72981089 + 0 NA promoter-TSS (ENSMUSG00000027109.16) protein_coding-promoter-TSS (ENSMUSG00000027109.16) 305 ENSMUSG00000063714.15 ENSMUSG00000063714 ENSMUST00000137941 Sp3os antisense Interval_145730 chr7 37875164 37875499 + 0 NA Intergenic Intergenic -50984 ENSMUSG00000064591.1 ENSMUSG00000064591 ENSMUST00000082657 Gm22302 snRNA Interval_63434 chr15 101069473 101071109 + 0 NA intron (ENSMUSG00000095440.2, intron 1 of 1) protein_coding-intron (ENSMUSG00000095440.2, intron 1 of 1) 8276 ENSMUSG00000095440.2 ENSMUSG00000095440 ENSMUST00000213610 Fignl2 protein_coding Interval_49941 chr13 118574710 118575453 + 0 NA intron (ENSMUSG00000100727.6, intron 2 of 3) lincRNA-intron (ENSMUSG00000100727.6, intron 2 of 3) -5299 ENSMUSG00000114365.1 ENSMUSG00000114365 ENSMUST00000223971 Gm9098 processed_pseudogene Interval_124411 chr5 45658359 45658652 + 0 NA promoter-TSS (ENSMUSG00000105634.1) processed_pseudogene-promoter-TSS (ENSMUSG00000105634.1) -933 ENSMUSG00000105634.1 ENSMUSG00000105634 ENSMUST00000199986 Gm43367 processed_pseudogene Interval_167146 chr9 65637367 65638073 + 0 NA intron (ENSMUSG00000032387.15, intron 1 of 4) protein_coding-intron (ENSMUSG00000032387.15, intron 1 of 7) -21257 ENSMUSG00000032387.15 ENSMUSG00000032387 ENSMUST00000216769 Rbpms2 protein_coding Interval_87467 chr19 52571496 52571762 + 0 NA Intergenic Intergenic 234464 ENSMUSG00000118114.1 ENSMUSG00000118114 ENSMUST00000236031 Gm50332 lincRNA Interval_118545 chr4 132406512 132406907 + 0 NA intron (ENSMUSG00000066043.13, intron 2 of 5) protein_coding-intron (ENSMUSG00000066043.13, intron 2 of 12) -1600 ENSMUSG00000096350.1 ENSMUSG00000096350 ENSMUST00000175120 Gm25707 miRNA Interval_130809 chr5 130853104 130853943 + 0 NA Intergenic Intergenic 14314 ENSMUSG00000106694.1 ENSMUSG00000106694 ENSMUST00000200788 Gm42894 TEC Interval_23859 chr11 27203858 27205084 + 0 NA Intergenic Intergenic 114507 ENSMUSG00000088438.1 ENSMUSG00000088438 ENSMUST00000157813 Gm25387 snoRNA Interval_125150 chr5 64864486 64866877 + 0 NA Intergenic Intergenic 33288 ENSMUSG00000118495.1 ENSMUSG00000118495 ENSMUST00000238830 AC161757.1 processed_pseudogene Interval_31485 chr11 100960757 100961070 + 0 NA intron (ENSMUSG00000004044.9, intron 1 of 1) protein_coding-intron (ENSMUSG00000004044.9, intron 1 of 1) 9638 ENSMUSG00000004044.9 ENSMUSG00000004044 ENSMUST00000132934 Cavin1 protein_coding Interval_51868 chr14 33164152 33164646 + 0 NA intron (ENSMUSG00000051506.17, intron 1 of 1) protein_coding-intron (ENSMUSG00000051506.17, intron 1 of 58) 21109 ENSMUSG00000051506.17 ENSMUSG00000051506 ENSMUST00000159606 Wdfy4 protein_coding Interval_30576 chr11 95204455 95204814 + 0 NA Intergenic Intergenic 20998 ENSMUSG00000085992.1 ENSMUSG00000085992 ENSMUST00000150818 Gm11515 lincRNA Interval_15207 chr10 43371905 43372390 + 0 NA exon (ENSMUSG00000038240.13, exon 4 of 8) protein_coding-exon (ENSMUSG00000038240.13, exon 4 of 8) 1773 ENSMUSG00000089839.1 ENSMUSG00000089839 ENSMUST00000160308 Rps19-ps11 processed_pseudogene Interval_132525 chr5 145748680 145748875 + 0 NA Intergenic Intergenic -11768 ENSMUSG00000105661.1 ENSMUSG00000105661 ENSMUST00000198575 Gm43626 processed_pseudogene Interval_67606 chr16 52218970 52219510 + 0 NA Intergenic Intergenic 66714 ENSMUSG00000022637.11 ENSMUSG00000022637 ENSMUST00000228247 Cblb protein_coding Interval_145523 chr7 35353303 35354349 + 0 NA exon (ENSMUSG00000030494.13, exon 2 of 15) protein_coding-exon (ENSMUSG00000030494.13, exon 2 of 15) -28739 ENSMUSG00000030494.13 ENSMUSG00000030494 ENSMUST00000187997 Rhpn2 protein_coding Interval_164729 chr9 40839103 40839449 + 0 NA Intergenic Intergenic 18307 ENSMUSG00000110982.1 ENSMUSG00000110982 ENSMUST00000215895 Gm48565 TEC Interval_12078 chr1 189581315 189582363 + 0 NA Intergenic Intergenic 58395 ENSMUSG00000103087.1 ENSMUSG00000103087 ENSMUST00000192679 Gm38122 TEC Interval_172386 chrX 16910368 16911071 + 0 NA intron (ENSMUSG00000040138.7, intron 1 of 2) protein_coding-intron (ENSMUSG00000040138.7, intron 1 of 2) 1055 ENSMUSG00000040138.7 ENSMUSG00000040138 ENSMUST00000040134 Ndp protein_coding Interval_26225 chr11 55237083 55237419 + 0 NA TTS (ENSMUSG00000020261.15) protein_coding-TTS (ENSMUSG00000020261.15) 32889 ENSMUSG00000020261.15 ENSMUSG00000020261 ENSMUST00000108867 Slc36a1 protein_coding Interval_149543 chr7 99468050 99469372 + 0 NA promoter-TSS (ENSMUSG00000035298.8) protein_coding-promoter-TSS (ENSMUSG00000035298.8) -252 ENSMUSG00000035298.8 ENSMUSG00000035298 ENSMUST00000152424 Klhl35 protein_coding Interval_50126 chr14 8148445 8149155 + 0 NA intron (ENSMUSG00000033885.15, intron 13 of 17) protein_coding-intron (ENSMUSG00000033885.15, intron 13 of 17) 18296 ENSMUSG00000021748.9 ENSMUSG00000021748 ENSMUST00000224690 Pdhb protein_coding Interval_131185 chr5 135660865 135661476 + 0 NA intron (ENSMUSG00000105239.1, intron 2 of 3) lincRNA-intron (ENSMUSG00000105239.1, intron 2 of 3) 11817 ENSMUSG00000105239.1 ENSMUSG00000105239 ENSMUST00000198157 Gm43091 lincRNA Interval_73252 chr17 35789707 35789901 + 0 NA Intergenic Intergenic 17354 ENSMUSG00000092171.1 ENSMUSG00000092171 ENSMUST00000172874 4833427F10Rik lincRNA Interval_65172 chr16 20337615 20339190 + 0 NA TTS (ENSMUSG00000022822.16) protein_coding-TTS (ENSMUSG00000022822.16) -21652 ENSMUSG00000022818.13 ENSMUSG00000022818 ENSMUST00000182669 Cyp2ab1 protein_coding Interval_149471 chr7 98866651 98867872 + 0 NA Intergenic Intergenic -12166 ENSMUSG00000091496.1 ENSMUSG00000091496 ENSMUST00000172081 Gm8398 processed_pseudogene Interval_137588 chr6 73888427 73889597 + 0 NA Intergenic Intergenic -3163 ENSMUSG00000107646.1 ENSMUSG00000107646 ENSMUST00000203582 Gm44225 processed_pseudogene Interval_141055 chr6 124711805 124712872 + 0 NA promoter-TSS (ENSMUSG00000004264.17) protein_coding-promoter-TSS (ENSMUSG00000004264.17) 2 ENSMUSG00000004264.17 ENSMUSG00000004264 ENSMUST00000129422 Phb2 protein_coding Interval_131575 chr5 138222022 138222548 + 0 NA Intergenic Intergenic 2548 ENSMUSG00000084469.1 ENSMUSG00000084469 ENSMUST00000122520 Gm22956 snRNA Interval_107208 chr3 104621036 104621320 + 0 NA Intergenic Intergenic 13479 ENSMUSG00000106565.1 ENSMUSG00000106565 ENSMUST00000196149 Gm43582 processed_pseudogene Interval_79883 chr18 35726495 35727168 + 0 NA promoter-TSS (ENSMUSG00000073598.3) protein_coding-promoter-TSS (ENSMUSG00000073598.3) -4524 ENSMUSG00000073599.10 ENSMUSG00000073599 ENSMUST00000143684 Ecscr protein_coding Interval_119088 chr4 135466765 135467106 + 0 NA exon (ENSMUSG00000028803.18, exon 9 of 12) protein_coding-exon (ENSMUSG00000028803.18, exon 9 of 12) 16054 ENSMUSG00000103955.1 ENSMUSG00000103955 ENSMUST00000194277 Gm37270 TEC Interval_34465 chr12 4408120 4408387 + 0 NA intron (ENSMUSG00000020647.10, intron 1 of 22) protein_coding-intron (ENSMUSG00000020647.10, intron 2 of 22) 13771 ENSMUSG00000084597.1 ENSMUSG00000084597 ENSMUST00000122648 Gm22343 misc_RNA Interval_49927 chr13 118386496 118387751 + 0 NA promoter-TSS (ENSMUSG00000021731.10) protein_coding-promoter-TSS (ENSMUSG00000021731.10) -442 ENSMUSG00000021731.10 ENSMUSG00000021731 ENSMUST00000225170 Mrps30 protein_coding Interval_172781 chrX 48669747 48669969 + 0 NA intron (ENSMUSG00000051209.3, intron 1 of 1) protein_coding-intron (ENSMUSG00000051209.3, intron 1 of 1) 4620 ENSMUSG00000051209.3 ENSMUSG00000051209 ENSMUST00000053970 Gpr119 protein_coding Interval_126831 chr5 93351715 93353723 + 0 NA Intergenic Intergenic 40372 ENSMUSG00000053208.10 ENSMUSG00000053208 ENSMUST00000128468 Kat2b-ps processed_pseudogene Interval_128876 chr5 115820105 115822211 + 0 NA Intergenic Intergenic -18999 ENSMUSG00000083833.4 ENSMUSG00000083833 ENSMUST00000118829 Gm13841 processed_pseudogene Interval_155867 chr8 40423196 40424602 + 0 NA promoter-TSS (ENSMUSG00000039470.15) protein_coding-promoter-TSS (ENSMUSG00000039470.15) -205 ENSMUSG00000039470.15 ENSMUSG00000039470 ENSMUST00000164934 Zdhhc2 protein_coding Interval_132729 chr5 147424550 147424764 + 0 NA Intergenic Intergenic -3081 ENSMUSG00000107336.1 ENSMUSG00000107336 ENSMUST00000202351 Gm43461 TEC Interval_119644 chr4 138949469 138949691 + 0 NA Intergenic Intergenic -17532 ENSMUSG00000070661.7 ENSMUSG00000070661 ENSMUST00000239443 Rnf186 protein_coding Interval_67979 chr16 62504761 62505179 + 0 NA Intergenic Intergenic -21021 ENSMUSG00000118558.1 ENSMUSG00000118558 ENSMUST00000239089 CT010569.1 processed_pseudogene Interval_101794 chr3 9591359 9592402 + 0 NA intron (ENSMUSG00000040209.12, intron 1 of 8) protein_coding-intron (ENSMUSG00000040209.12, intron 1 of 8) -26581 ENSMUSG00000040209.12 ENSMUSG00000040209 ENSMUST00000192832 Zfp704 protein_coding Interval_106034 chr3 91042579 91043419 + 0 NA Intergenic Intergenic 3426 ENSMUSG00000105919.1 ENSMUSG00000105919 ENSMUST00000199715 Gm7166 processed_pseudogene Interval_172258 chrX 12062620 12063103 + 0 NA intron (ENSMUSG00000040363.15, intron 1 of 13) protein_coding-intron (ENSMUSG00000040363.15, intron 1 of 13) 78393 ENSMUSG00000081947.2 ENSMUSG00000081947 ENSMUST00000117924 Gm14512 processed_pseudogene Interval_37720 chr12 71387660 71387943 + 0 NA intron (ENSMUSG00000113441.1, intron 2 of 5) lincRNA-intron (ENSMUSG00000113441.1, intron 2 of 5) -3593 ENSMUSG00000100668.1 ENSMUSG00000100668 ENSMUST00000190526 1700083H02Rik lincRNA Interval_21166 chr10 127010168 127011748 + 0 NA TTS (ENSMUSG00000040521.11) protein_coding-TTS (ENSMUSG00000040521.11) 10219 ENSMUSG00000025432.11 ENSMUSG00000025432 ENSMUST00000129173 Avil protein_coding Interval_157882 chr8 75194473 75195444 + 0 NA Intergenic Intergenic -6481 ENSMUSG00000110640.1 ENSMUSG00000110640 ENSMUST00000212891 Gm45903 lincRNA Interval_133344 chr6 3527232 3527476 + 0 NA intron (ENSMUSG00000001376.17, intron 6 of 7) protein_coding-intron (ENSMUSG00000001376.17, intron 9 of 27) -39925 ENSMUSG00000044156.14 ENSMUSG00000044156 ENSMUST00000200972 Hepacam2 protein_coding Interval_57649 chr15 13202716 13202917 + 0 NA Intergenic Intergenic -29141 ENSMUSG00000039385.5 ENSMUSG00000039385 ENSMUST00000226917 Cdh6 protein_coding Interval_74061 chr17 46327623 46328608 + 0 NA promoter-TSS (ENSMUSG00000032842.13) protein_coding-promoter-TSS (ENSMUSG00000032842.13) -139 ENSMUSG00000032842.13 ENSMUSG00000032842 ENSMUST00000170168 Abcc10 protein_coding Interval_25483 chr11 48871668 48872217 + 0 NA promoter-TSS (ENSMUSG00000046879.7) protein_coding-promoter-TSS (ENSMUSG00000046879.7) -259 ENSMUSG00000046879.7 ENSMUSG00000046879 ENSMUST00000097271 Irgm1 protein_coding Interval_31770 chr11 102740990 102741781 + 0 NA intron (ENSMUSG00000086162.1, intron 4 of 10) unitary_pseudogene-intron (ENSMUSG00000086162.1, intron 4 of 10) 8980 ENSMUSG00000086162.1 ENSMUSG00000086162 ENSMUST00000124025 Gm16342 unitary_pseudogene Interval_45494 chr13 55461048 55461424 + 0 NA TTS (ENSMUSG00000074886.11) protein_coding-TTS (ENSMUSG00000074886.11) -3031 ENSMUSG00000034686.8 ENSMUSG00000034686 ENSMUST00000046533 Prr7 protein_coding Interval_122503 chr5 23465244 23465582 + 0 NA intron (ENSMUSG00000029004.15, intron 4 of 12) protein_coding-intron (ENSMUSG00000029004.15, intron 4 of 25) -13142 ENSMUSG00000029004.15 ENSMUSG00000029004 ENSMUST00000194010 Kmt2e protein_coding Interval_31208 chr11 98907564 98908247 + 0 NA promoter-TSS (ENSMUSG00000017499.15) protein_coding-promoter-TSS (ENSMUSG00000017499.15) -12561 ENSMUSG00000017499.15 ENSMUSG00000017499 ENSMUST00000135862 Cdc6 protein_coding Interval_159333 chr8 93684332 93684548 + 0 NA intron (ENSMUSG00000110559.1, intron 2 of 5) lincRNA-intron (ENSMUSG00000110559.1, intron 2 of 5) 3518 ENSMUSG00000110559.1 ENSMUSG00000110559 ENSMUST00000212304 Gm26843 lincRNA Interval_152364 chr7 132412547 132412836 + 0 NA intron (ENSMUSG00000030849.18, intron 2 of 6) protein_coding-intron (ENSMUSG00000030849.18, intron 2 of 6) -7339 ENSMUSG00000108870.1 ENSMUSG00000108870 ENSMUST00000207259 Gm44893 lincRNA Interval_137960 chr6 83743972 83744984 + 0 NA intron (ENSMUSG00000006269.7, intron 1 of 1) protein_coding-intron (ENSMUSG00000006269.7, intron 1 of 13) 1414 ENSMUSG00000006269.7 ENSMUSG00000006269 ENSMUST00000206052 Atp6v1b1 protein_coding Interval_166426 chr9 59386720 59387985 + 0 NA TTS (ENSMUSG00000025234.11) protein_coding-TTS (ENSMUSG00000025234.11) -59839 ENSMUSG00000025235.8 ENSMUSG00000025235 ENSMUST00000214225 Bbs4 protein_coding Interval_125027 chr5 63953087 63953904 + 0 NA intron (ENSMUSG00000047881.14, intron 1 of 7) protein_coding-intron (ENSMUSG00000047881.14, intron 1 of 7) -22581 ENSMUSG00000047881.14 ENSMUSG00000047881 ENSMUST00000127314 Rell1 protein_coding Interval_49007 chr13 106869171 106869410 + 0 NA intron (ENSMUSG00000042590.17, intron 19 of 29) protein_coding-intron (ENSMUSG00000042590.17, intron 20 of 29) 17390 ENSMUSG00000100833.1 ENSMUSG00000100833 ENSMUST00000191363 Gm28988 antisense Interval_102507 chr3 27290916 27291688 + 0 NA Intergenic Intergenic 13242 ENSMUSG00000102186.1 ENSMUSG00000102186 ENSMUST00000193346 Gm37191 processed_pseudogene Interval_86904 chr19 44739761 44742465 + 0 NA promoter-TSS (ENSMUSG00000117823.1) lincRNA-promoter-TSS (ENSMUSG00000117823.1) 1234 ENSMUSG00000117823.1 ENSMUSG00000117823 ENSMUST00000236025 Gm35610 lincRNA Interval_76748 chr17 83808114 83810505 + 0 NA intron (ENSMUSG00000055817.18, intron 5 of 5) protein_coding-intron (ENSMUSG00000055817.18, intron 16 of 16) 37480 ENSMUSG00000000673.9 ENSMUSG00000000673 ENSMUST00000234312 Haao protein_coding Interval_123121 chr5 29819115 29819854 + 0 NA Intergenic Intergenic -11326 ENSMUSG00000105999.1 ENSMUSG00000105999 ENSMUST00000197485 Gm2213 processed_pseudogene Interval_113035 chr4 47121964 47122524 + 0 NA intron (ENSMUSG00000039774.12, intron 8 of 8) protein_coding-intron (ENSMUSG00000039774.12, intron 9 of 9) 21212 ENSMUSG00000094286.1 ENSMUSG00000094286 ENSMUST00000179673 Gm12424 processed_pseudogene Interval_10681 chr1 172677325 172677629 + 0 NA Intergenic Intergenic 7364 ENSMUSG00000088813.1 ENSMUSG00000088813 ENSMUST00000158188 Gm22383 misc_RNA Interval_41851 chr13 3530890 3532744 + 0 NA Intergenic Intergenic -22222 ENSMUSG00000021218.10 ENSMUSG00000021218 ENSMUST00000221581 Gdi2 protein_coding Interval_36772 chr12 53587714 53588228 + 0 NA intron (ENSMUSG00000021010.9, intron 3 of 11) protein_coding-intron (ENSMUSG00000021010.9, intron 3 of 11) -278125 ENSMUSG00000113179.1 ENSMUSG00000113179 ENSMUST00000221214 1700030L22Rik antisense Interval_15620 chr10 52353319 52353653 + 0 NA exon (ENSMUSG00000019861.15, exon 4 of 8) protein_coding-exon (ENSMUSG00000019861.15, exon 4 of 8) -3086 ENSMUSG00000019861.15 ENSMUSG00000019861 ENSMUST00000217710 Gopc protein_coding Interval_131362 chr5 136714269 136715298 + 0 NA Intergenic Intergenic 17004 ENSMUSG00000005474.9 ENSMUSG00000005474 ENSMUST00000197849 Myl10 protein_coding Interval_140796 chr6 121394022 121394583 + 0 NA intron (ENSMUSG00000040797.16, intron 4 of 12) protein_coding-intron (ENSMUSG00000040797.16, intron 5 of 13) 37482 ENSMUSG00000030109.15 ENSMUSG00000030109 ENSMUST00000170339 Slc6a12 protein_coding Interval_51543 chr14 30008008 30009618 + 0 NA promoter-TSS (ENSMUSG00000015966.17) protein_coding-promoter-TSS (ENSMUSG00000015966.17) -358 ENSMUSG00000015970.19 ENSMUSG00000015970 ENSMUST00000118917 Chdh protein_coding Interval_45421 chr13 55083657 55083900 + 0 NA intron (ENSMUSG00000025878.16, intron 3 of 13) protein_coding-intron (ENSMUSG00000025878.16, intron 3 of 14) -1999 ENSMUSG00000094446.1 ENSMUSG00000094446 ENSMUST00000075962 Gm6344 processed_pseudogene Interval_129175 chr5 117999507 117999723 + 0 NA intron (ENSMUSG00000032898.9, intron 8 of 10) protein_coding-intron (ENSMUSG00000032898.9, intron 9 of 11) 22885 ENSMUSG00000032898.9 ENSMUSG00000032898 ENSMUST00000201889 Fbxo21 protein_coding Interval_67636 chr16 54939781 54939997 + 0 NA Intergenic Intergenic -32542 ENSMUSG00000064549.1 ENSMUSG00000064549 ENSMUST00000082615 Gm22977 snRNA Interval_117 GL456239.1 33789 34225 + 0 NA NA NA NA NA Interval_89431 chr2 20641550 20642758 + 0 NA intron (ENSMUSG00000036617.17, intron 1 of 2) protein_coding-intron (ENSMUSG00000036617.17, intron 3 of 18) 71080 ENSMUSG00000086418.1 ENSMUSG00000086418 ENSMUST00000137186 Gm13362 antisense Interval_54007 chr14 64364267 64364740 + 0 NA intron (ENSMUSG00000054733.9, intron 1 of 2) protein_coding-intron (ENSMUSG00000054733.9, intron 6 of 10) 52445 ENSMUSG00000054733.9 ENSMUSG00000054733 ENSMUST00000209513 Msra protein_coding Interval_90066 chr2 27693337 27694488 + 0 NA intron (ENSMUSG00000015846.15, intron 2 of 10) protein_coding-intron (ENSMUSG00000015846.15, intron 1 of 9) -31307 ENSMUSG00000015846.15 ENSMUSG00000015846 ENSMUST00000148756 Rxra protein_coding Interval_92225 chr2 57149868 57150231 + 0 NA intron (ENSMUSG00000084938.1, intron 1 of 2) processed_transcript-intron (ENSMUSG00000084938.1, intron 1 of 2) -26046 ENSMUSG00000026826.13 ENSMUSG00000026826 ENSMUST00000128776 Nr4a2 protein_coding Interval_65983 chr16 30709268 30709454 + 0 NA Intergenic Intergenic 83894 ENSMUSG00000116570.1 ENSMUSG00000116570 ENSMUST00000231445 Gm49754 lincRNA Interval_168564 chr9 83607223 83607826 + 0 NA intron (ENSMUSG00000032261.16, intron 3 of 3) protein_coding-intron (ENSMUSG00000032261.16, intron 2 of 2) -34235 ENSMUSG00000110950.1 ENSMUSG00000110950 ENSMUST00000213703 Gm39384 lincRNA Interval_90201 chr2 28988192 28989822 + 0 NA intron (ENSMUSG00000079502.8, intron 1 of 5) protein_coding-intron (ENSMUSG00000079502.8, intron 1 of 5) 50353 ENSMUSG00000079502.8 ENSMUSG00000079502 ENSMUST00000113843 Cfap77 protein_coding Interval_103814 chr3 53234876 53235068 + 0 NA intron (ENSMUSG00000048332.13, intron 3 of 3) protein_coding-intron (ENSMUSG00000048332.13, intron 3 of 3) 5647 ENSMUSG00000048332.13 ENSMUSG00000048332 ENSMUST00000196913 Lhfp protein_coding Interval_40852 chr12 108859044 108859826 + 0 NA TTS (ENSMUSG00000021266.16) protein_coding-TTS (ENSMUSG00000021266.16) 3234 ENSMUSG00000088217.1 ENSMUSG00000088217 ENSMUST00000157592 Gm22079 snRNA Interval_16857 chr10 69304617 69307531 + 0 NA Intergenic Intergenic -6065 ENSMUSG00000112798.1 ENSMUSG00000112798 ENSMUST00000217861 Gm40685 lincRNA Interval_75331 chr17 65905056 65907400 + 0 NA intron (ENSMUSG00000117229.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000117229.1, intron 1 of 3) -7359 ENSMUSG00000117229.1 ENSMUSG00000117229 ENSMUST00000233760 Gm35550 lincRNA Interval_50510 chr14 14452306 14452855 + 0 NA Intergenic Intergenic -3636 ENSMUSG00000114737.1 ENSMUSG00000114737 ENSMUST00000224271 Gm8483 processed_pseudogene Interval_122767 chr5 25257962 25258251 + 0 NA intron (ENSMUSG00000038072.14, intron 7 of 11) protein_coding-intron (ENSMUSG00000038072.14, intron 7 of 11) -34953 ENSMUSG00000054116.1 ENSMUSG00000054116 ENSMUST00000066954 E130116L18Rik protein_coding Interval_52481 chr14 46854859 46856023 + 0 NA Intergenic Intergenic 10628 ENSMUSG00000115417.1 ENSMUSG00000115417 ENSMUST00000228424 Gm48949 sense_intronic Interval_114538 chr4 82381955 82382180 + 0 NA intron (ENSMUSG00000008575.17, intron 3 of 4) protein_coding-intron (ENSMUSG00000008575.17, intron 3 of 11) -57343 ENSMUSG00000084595.1 ENSMUSG00000084595 ENSMUST00000122646 n-R5s188 rRNA Interval_9492 chr1 157741037 157741880 + 0 NA Intergenic Intergenic -119322 ENSMUSG00000103962.1 ENSMUSG00000103962 ENSMUST00000193203 Gm38213 processed_pseudogene Interval_4165 chr1 71074183 71074644 + 0 NA intron (ENSMUSG00000026196.7, intron 4 of 10) protein_coding-intron (ENSMUSG00000026196.7, intron 4 of 10) 28733 ENSMUSG00000026196.7 ENSMUSG00000026196 ENSMUST00000027393 Bard1 protein_coding Interval_115733 chr4 103148619 103148887 + 0 NA intron (ENSMUSG00000028522.16, intron 10 of 14) protein_coding-intron (ENSMUSG00000028522.16, intron 9 of 13) 29363 ENSMUSG00000028522.16 ENSMUSG00000028522 ENSMUST00000128536 Mier1 protein_coding Interval_48535 chr13 99921192 99921532 + 0 NA Intergenic Intergenic -20271 ENSMUSG00000021647.7 ENSMUSG00000021647 ENSMUST00000224142 Cartpt protein_coding Interval_39602 chr12 91415080 91415457 + 0 NA intron (ENSMUSG00000020963.15, intron 1 of 9) protein_coding-intron (ENSMUSG00000020963.15, intron 1 of 8) 30705 ENSMUSG00000020963.15 ENSMUSG00000020963 ENSMUST00000186437 Tshr protein_coding Interval_128692 chr5 114749278 114750151 + 0 NA intron (ENSMUSG00000041890.17, intron 10 of 18) protein_coding-intron (ENSMUSG00000041890.17, intron 9 of 17) 11977 ENSMUSG00000041890.17 ENSMUSG00000041890 ENSMUST00000133096 Git2 protein_coding Interval_80179 chr18 38052146 38052645 + 0 NA intron (ENSMUSG00000118056.1, intron 3 of 3) lincRNA-intron (ENSMUSG00000118056.1, intron 3 of 3) 28866 ENSMUSG00000118056.1 ENSMUSG00000118056 ENSMUST00000236681 Gm30093 lincRNA Interval_156167 chr8 45410142 45411408 + 0 NA promoter-TSS (ENSMUSG00000031639.12) protein_coding-promoter-TSS (ENSMUSG00000031639.12) -157 ENSMUSG00000031639.12 ENSMUSG00000031639 ENSMUST00000210354 Tlr3 protein_coding Interval_96879 chr2 129197785 129199670 + 0 NA promoter-TSS (ENSMUSG00000027397.14) protein_coding-promoter-TSS (ENSMUSG00000027397.14) -417 ENSMUSG00000027397.14 ENSMUSG00000027397 ENSMUST00000144025 Slc20a1 protein_coding Interval_66830 chr16 37955871 37956996 + 0 NA intron (ENSMUSG00000046961.8, intron 3 of 9) protein_coding-intron (ENSMUSG00000046961.8, intron 3 of 9) -23654 ENSMUSG00000065188.1 ENSMUSG00000065188 ENSMUST00000083254 Gm25140 snRNA Interval_120686 chr4 150101313 150102170 + 0 NA exon (ENSMUSG00000047875.6, exon 3 of 4) protein_coding-exon (ENSMUSG00000047875.6, exon 3 of 4) -10684 ENSMUSG00000118596.1 ENSMUSG00000118596 ENSMUST00000239356 AL606971.1 unprocessed_pseudogene Interval_13466 chr10 18453348 18453642 + 0 NA intron (ENSMUSG00000039835.16, intron 1 of 3) protein_coding-intron (ENSMUSG00000039835.16, intron 1 of 6) 92569 ENSMUSG00000019853.6 ENSMUSG00000019853 ENSMUST00000214548 Hebp2 protein_coding Interval_165576 chr9 49728060 49729989 + 0 NA intron (ENSMUSG00000039542.16, intron 1 of 1) protein_coding-intron (ENSMUSG00000039542.16, intron 1 of 15) 69898 ENSMUSG00000039542.16 ENSMUSG00000039542 ENSMUST00000217121 Ncam1 protein_coding Interval_15708 chr10 53863306 53863885 + 0 NA Intergenic Intergenic -60066 ENSMUSG00000112809.1 ENSMUSG00000112809 ENSMUST00000217870 Gm47915 lincRNA Interval_101574 chr3 6922313 6923548 + 0 NA Intergenic Intergenic -54338 ENSMUSG00000089220.1 ENSMUSG00000089220 ENSMUST00000158595 Gm22074 snoRNA Interval_9567 chr1 159464903 159465803 + 0 NA Intergenic Intergenic 36393 ENSMUSG00000103389.1 ENSMUSG00000103389 ENSMUST00000193072 Gm37757 processed_pseudogene Interval_23587 chr11 23582000 23582514 + 0 NA intron (ENSMUSG00000042208.15, intron 19 of 21) protein_coding-intron (ENSMUSG00000042208.15, intron 17 of 19) -23415 ENSMUSG00000085415.1 ENSMUSG00000085415 ENSMUST00000125204 Selenok-ps1 processed_transcript Interval_66648 chr16 35855734 35857664 + 0 NA TTS (ENSMUSG00000034422.14) protein_coding-TTS (ENSMUSG00000034422.14) 11252 ENSMUSG00000116639.1 ENSMUSG00000116639 ENSMUST00000231830 Gm49730 TEC Interval_160027 chr8 105878416 105878802 + 0 NA intron (ENSMUSG00000008450.8, intron 3 of 3) protein_coding-intron (ENSMUSG00000008450.8, intron 4 of 4) -11659 ENSMUSG00000036270.16 ENSMUSG00000036270 ENSMUST00000156357 Edc4 protein_coding Interval_135409 chr6 39176913 39177140 + 0 NA intron (ENSMUSG00000042599.8, intron 2 of 19) protein_coding-intron (ENSMUSG00000042599.8, intron 2 of 19) -22344 ENSMUSG00000042599.8 ENSMUSG00000042599 ENSMUST00000127036 Kdm7a protein_coding Interval_98300 chr2 150878382 150879165 + 0 NA intron (ENSMUSG00000032046.15, intron 1 of 12) protein_coding-intron (ENSMUSG00000032046.15, intron 1 of 12) -4950 ENSMUSG00000087887.1 ENSMUSG00000087887 ENSMUST00000157262 Gm23598 snoRNA Interval_59937 chr15 62098742 62099879 + 0 NA intron (ENSMUSG00000097039.8, intron 1 of 1) lincRNA-intron (ENSMUSG00000097039.8, intron 1 of 8) -7877 ENSMUSG00000099295.1 ENSMUSG00000099295 ENSMUST00000183721 Gm27718 misc_RNA Interval_120578 chr4 149490955 149491731 + 0 NA intron (ENSMUSG00000028990.13, intron 4 of 6) protein_coding-intron (ENSMUSG00000028990.13, intron 4 of 6) 6010 ENSMUSG00000028990.13 ENSMUSG00000028990 ENSMUST00000146427 Lzic protein_coding Interval_162898 chr9 12058067 12058461 + 0 NA Intergenic Intergenic -80015 ENSMUSG00000111111.1 ENSMUSG00000111111 ENSMUST00000217391 Gm47037 TEC Interval_159070 chr8 89432337 89433553 + 0 NA Intergenic Intergenic 156596 ENSMUSG00000064758.1 ENSMUSG00000064758 ENSMUST00000082824 Gm26331 snRNA Interval_70769 chr17 14278613 14280816 + 0 NA exon (ENSMUSG00000023886.10, exon 1 of 13) protein_coding-exon (ENSMUSG00000023886.10, exon 1 of 13) 29863 ENSMUSG00000117254.1 ENSMUSG00000117254 ENSMUST00000233271 Gm34567 lincRNA Interval_103273 chr3 37723002 37724843 + 0 NA intron (ENSMUSG00000058174.7, intron 1 of 2) protein_coding-intron (ENSMUSG00000058174.7, intron 1 of 2) 409 ENSMUSG00000058174.7 ENSMUSG00000058174 ENSMUST00000134904 Gm5148 protein_coding Interval_90784 chr2 32593650 32595122 + 0 NA promoter-TSS (ENSMUSG00000093147.1) snRNA-promoter-TSS (ENSMUSG00000093147.1) -813 ENSMUSG00000093147.1 ENSMUSG00000093147 ENSMUST00000175406 Gm23369 snRNA Interval_115388 chr4 98454088 98454902 + 0 NA exon (ENSMUSG00000061859.17, exon 15 of 15) protein_coding-exon (ENSMUSG00000061859.17, exon 15 of 15) 58704 ENSMUSG00000061859.17 ENSMUSG00000061859 ENSMUST00000030290 Patj protein_coding Interval_103430 chr3 41509381 41510184 + 0 NA Intergenic Intergenic -16592 ENSMUSG00000097639.2 ENSMUSG00000097639 ENSMUST00000181833 Platr4 lincRNA Interval_16918 chr10 69873674 69873910 + 0 NA intron (ENSMUSG00000069601.14, intron 11 of 42) protein_coding-intron (ENSMUSG00000069601.14, intron 1 of 16) -301219 ENSMUSG00000048701.13 ENSMUSG00000048701 ENSMUST00000135607 Ccdc6 protein_coding Interval_31744 chr11 102578549 102579960 + 0 NA promoter-TSS (ENSMUSG00000078640.9) protein_coding-promoter-TSS (ENSMUSG00000078640.9) 21 ENSMUSG00000078640.9 ENSMUSG00000078640 ENSMUST00000107080 Gm11627 protein_coding Interval_130360 chr5 126698836 126699750 + 0 NA Intergenic Intergenic -7621 ENSMUSG00000105673.1 ENSMUSG00000105673 ENSMUST00000197352 1700081B01Rik lincRNA Interval_58990 chr15 41446717 41448295 + 0 NA promoter-TSS (ENSMUSG00000022307.16) protein_coding-promoter-TSS (ENSMUSG00000022307.16) -204348 ENSMUSG00000116178.1 ENSMUSG00000116178 ENSMUST00000229823 Gm49529 processed_pseudogene Interval_25379 chr11 46920422 46920969 + 0 NA intron (ENSMUSG00000020354.15, intron 6 of 6) protein_coding-intron (ENSMUSG00000020354.15, intron 6 of 6) 46282 ENSMUSG00000082818.1 ENSMUSG00000082818 ENSMUST00000122081 Gm12175 processed_pseudogene Interval_92991 chr2 69275655 69276185 + 0 NA intron (ENSMUSG00000027048.15, intron 19 of 28) protein_coding-intron (ENSMUSG00000027048.15, intron 19 of 28) 27613 ENSMUSG00000086819.1 ENSMUSG00000086819 ENSMUST00000126240 Gm13613 antisense Interval_49384 chr13 111588956 111589186 + 0 NA intron (ENSMUSG00000086649.1, intron 2 of 3) processed_transcript-intron (ENSMUSG00000086649.1, intron 2 of 3) -3714 ENSMUSG00000067122.2 ENSMUSG00000067122 ENSMUST00000086960 Gm10198 protein_coding Interval_122241 chr5 20598091 20598476 + 0 NA intron (ENSMUSG00000040003.18, intron 11 of 15) protein_coding-intron (ENSMUSG00000040003.18, intron 16 of 22) 9687 ENSMUSG00000106240.1 ENSMUSG00000106240 ENSMUST00000196129 Gm3544 processed_pseudogene Interval_115157 chr4 92243898 92245131 + 0 NA Intergenic Intergenic -52765 ENSMUSG00000066107.6 ENSMUSG00000066107 ENSMUST00000123179 Gm12666 protein_coding Interval_25843 chr11 52089089 52090010 + 0 NA intron (ENSMUSG00000020389.19, intron 2 of 2) protein_coding-intron (ENSMUSG00000020389.19, intron 3 of 3) 9604 ENSMUSG00000093006.2 ENSMUSG00000093006 ENSMUST00000175265 Gm24157 miRNA Interval_125833 chr5 74823173 74823427 + 0 NA Intergenic Intergenic -60035 ENSMUSG00000106806.1 ENSMUSG00000106806 ENSMUST00000202480 Gm17906 processed_pseudogene Interval_20027 chr10 112177064 112177321 + 0 NA intron (ENSMUSG00000035694.15, intron 2 of 16) protein_coding-intron (ENSMUSG00000035694.15, intron 3 of 17) 11516 ENSMUSG00000035694.15 ENSMUSG00000035694 ENSMUST00000132994 Caps2 protein_coding Interval_127128 chr5 100470446 100470794 + 0 NA intron (ENSMUSG00000035310.15, intron 4 of 13) protein_coding-intron (ENSMUSG00000035310.15, intron 4 of 12) 28013 ENSMUSG00000035310.15 ENSMUSG00000035310 ENSMUST00000144716 Lin54 protein_coding Interval_169875 chr9 102681619 102682259 + 0 NA Intergenic Intergenic -10946 ENSMUSG00000099491.1 ENSMUSG00000099491 ENSMUST00000185478 4930533D04Rik lincRNA Interval_39252 chr12 86202980 86203856 + 0 NA Intergenic Intergenic 34077 ENSMUSG00000097543.1 ENSMUSG00000097543 ENSMUST00000181667 Gm805 lincRNA Interval_99503 chr2 162752436 162753003 + 0 NA Intergenic Intergenic -4590 ENSMUSG00000077143.1 ENSMUSG00000077143 ENSMUST00000103955 Gm22936 snoRNA Interval_63137 chr15 99294465 99295993 + 0 NA promoter-TSS (ENSMUSG00000023007.15) protein_coding-promoter-TSS (ENSMUSG00000023007.15) 659 ENSMUSG00000078907.2 ENSMUSG00000078907 ENSMUST00000230608 Fam186b protein_coding Interval_83141 chr18 82033740 82034959 + 0 NA Intergenic Intergenic 38515 ENSMUSG00000118278.1 ENSMUSG00000118278 ENSMUST00000236169 Gm50293 TEC Interval_66572 chr16 35229242 35230296 + 0 NA intron (ENSMUSG00000022840.9, intron 1 of 20) protein_coding-intron (ENSMUSG00000022840.9, intron 1 of 20) 5154 ENSMUSG00000084581.1 ENSMUSG00000084581 ENSMUST00000122632 Gm25179 snRNA Interval_137602 chr6 74851336 74851621 + 0 NA Intergenic Intergenic 336690 ENSMUSG00000107467.1 ENSMUSG00000107467 ENSMUST00000204463 Gm8992 processed_pseudogene Interval_51770 chr14 32093854 32094178 + 0 NA intron (ENSMUSG00000021906.14, intron 4 of 4) protein_coding-intron (ENSMUSG00000021906.14, intron 3 of 7) 8231 ENSMUSG00000021906.14 ENSMUSG00000021906 ENSMUST00000164396 Oxnad1 protein_coding Interval_36859 chr12 54758664 54759097 + 0 NA intron (ENSMUSG00000005656.9, intron 1 of 1) protein_coding-intron (ENSMUSG00000005656.9, intron 9 of 13) -20258 ENSMUSG00000096206.1 ENSMUSG00000096206 ENSMUST00000178469 Gm22317 snRNA Interval_159719 chr8 99231534 99231701 + 0 NA intron (ENSMUSG00000036510.17, intron 3 of 12) protein_coding-intron (ENSMUSG00000036510.17, intron 3 of 12) -83528 ENSMUSG00000086842.2 ENSMUSG00000086842 ENSMUST00000137501 Gm15681 processed_pseudogene Interval_65583 chr16 23607826 23608636 + 0 NA promoter-TSS (ENSMUSG00000033355.6) protein_coding-promoter-TSS (ENSMUSG00000033355.6) 6489 ENSMUSG00000033355.6 ENSMUSG00000033355 ENSMUST00000211349 Rtp4 protein_coding Interval_47651 chr13 90787255 90787458 + 0 NA Intergenic Intergenic -9273 ENSMUSG00000114265.1 ENSMUSG00000114265 ENSMUST00000225134 Gm47521 processed_pseudogene Interval_149692 chr7 100684589 100686020 + 0 NA Intergenic Intergenic 10216 ENSMUSG00000108866.1 ENSMUSG00000108866 ENSMUST00000208164 Gm35082 lincRNA Interval_34055 chr11 120224895 120226024 + 0 NA Intergenic Intergenic 6126 ENSMUSG00000043993.6 ENSMUSG00000043993 ENSMUST00000139014 2900052L18Rik processed_transcript Interval_167 JH584304.1 65108 67235 + 0 NA NA NA NA NA Interval_3512 chr1 59215551 59216539 + 0 NA TTS (ENSMUSG00000026024.14) protein_coding-TTS (ENSMUSG00000026024.14) 3081 ENSMUSG00000026024.14 ENSMUSG00000026024 ENSMUST00000188469 Als2 protein_coding Interval_62422 chr15 92352589 92353360 + 0 NA intron (ENSMUSG00000097068.2, intron 1 of 3) lincRNA-intron (ENSMUSG00000097068.2, intron 1 of 3) 8615 ENSMUSG00000097068.2 ENSMUSG00000097068 ENSMUST00000181901 Gm26760 lincRNA Interval_145923 chr7 41941723 41942184 + 0 NA intron (ENSMUSG00000092328.1, intron 5 of 5) unprocessed_pseudogene-intron (ENSMUSG00000092328.1, intron 5 of 5) 38975 ENSMUSG00000092328.1 ENSMUSG00000092328 ENSMUST00000173861 Vmn2r-ps57 unprocessed_pseudogene Interval_137421 chr6 72153242 72153531 + 0 NA intron (ENSMUSG00000056091.12, intron 6 of 6) protein_coding-intron (ENSMUSG00000056091.12, intron 6 of 6) -9463 ENSMUSG00000108371.1 ENSMUSG00000108371 ENSMUST00000205674 Gm38832 lincRNA Interval_126799 chr5 93004936 93006436 + 0 NA Intergenic Intergenic 1855 ENSMUSG00000106930.1 ENSMUSG00000106930 ENSMUST00000200896 Gm6450 processed_pseudogene Interval_35775 chr12 29253699 29254984 + 0 NA Intergenic Intergenic 63227 ENSMUSG00000112776.1 ENSMUSG00000112776 ENSMUST00000218409 Gm6989 processed_pseudogene Interval_119120 chr4 135672767 135675844 + 0 NA Intergenic Intergenic -11982 ENSMUSG00000062157.6 ENSMUSG00000062157 ENSMUST00000074408 Ifnlr1 protein_coding Interval_78561 chr18 14713852 14714852 + 0 NA intron (ENSMUSG00000036743.4, intron 1 of 6) protein_coding-intron (ENSMUSG00000036743.4, intron 1 of 6) -12194 ENSMUSG00000036743.4 ENSMUSG00000036743 ENSMUST00000235037 Psma8 protein_coding Interval_933 chr1 13275980 13276374 + 0 NA intron (ENSMUSG00000005886.14, intron 1 of 3) protein_coding-intron (ENSMUSG00000005886.14, intron 2 of 22) 13979 ENSMUSG00000099183.1 ENSMUSG00000099183 ENSMUST00000183805 Gm27881 miRNA Interval_50399 chr14 12472028 12472297 + 0 NA exon (ENSMUSG00000054423.14, exon 1 of 1) protein_coding-exon (ENSMUSG00000054423.14, exon 1 of 1) -44521 ENSMUSG00000084541.1 ENSMUSG00000084541 ENSMUST00000122592 n-R5s45 rRNA Interval_154671 chr8 22485924 22487301 + 0 NA intron (ENSMUSG00000037656.9, intron 1 of 1) protein_coding-intron (ENSMUSG00000037656.9, intron 1 of 10) 6321 ENSMUSG00000097042.2 ENSMUSG00000097042 ENSMUST00000180411 Gm17491 sense_intronic Interval_53269 chr14 55709022 55710096 + 0 NA exon (ENSMUSG00000022218.16, exon 7 of 15) protein_coding-exon (ENSMUSG00000022218.16, exon 7 of 15) 3933 ENSMUSG00000022218.16 ENSMUSG00000022218 ENSMUST00000228123 Tgm1 protein_coding Interval_91760 chr2 49353116 49353320 + 0 NA Intergenic Intergenic -25067 ENSMUSG00000084177.1 ENSMUSG00000084177 ENSMUST00000121639 Gm13508 processed_pseudogene Interval_100918 chr2 173333854 173335256 + 0 NA Intergenic Intergenic 57857 ENSMUSG00000087600.1 ENSMUSG00000087600 ENSMUST00000150185 Pmepa1os antisense Interval_77250 chr17 87577831 87578140 + 0 NA Intergenic Intergenic -6331 ENSMUSG00000117414.1 ENSMUSG00000117414 ENSMUST00000234992 Gm46587 lincRNA Interval_16624 chr10 66491839 66492747 + 0 NA Intergenic Intergenic 8740 ENSMUSG00000077439.1 ENSMUSG00000077439 ENSMUST00000104251 Gm22594 snoRNA Interval_12119 chr1 189860539 189860765 + 0 NA intron (ENSMUSG00000026604.17, intron 16 of 18) protein_coding-intron (ENSMUSG00000026604.17, intron 15 of 17) 15609 ENSMUSG00000026604.17 ENSMUSG00000026604 ENSMUST00000148129 Ptpn14 protein_coding Interval_18279 chr10 84527774 84528160 + 0 NA exon (ENSMUSG00000046841.5, exon 2 of 2) protein_coding-exon (ENSMUSG00000046841.5, exon 2 of 2) 6069 ENSMUSG00000046841.5 ENSMUSG00000046841 ENSMUST00000167671 Ckap4 protein_coding Interval_34027 chr11 120092755 120093698 + 0 NA TTS (ENSMUSG00000025377.14) protein_coding-TTS (ENSMUSG00000025377.14) 4034 ENSMUSG00000025377.14 ENSMUSG00000025377 ENSMUST00000131569 Tepsin protein_coding Interval_92657 chr2 62063475 62064211 + 0 NA intron (ENSMUSG00000026904.17, intron 1 of 26) protein_coding-intron (ENSMUSG00000026904.17, intron 1 of 24) -93171 ENSMUSG00000083018.1 ENSMUSG00000083018 ENSMUST00000121668 Gm13555 processed_pseudogene Interval_19278 chr10 96010974 96011669 + 0 NA intron (ENSMUSG00000036499.9, intron 10 of 17) protein_coding-intron (ENSMUSG00000036499.9, intron 11 of 28) 70671 ENSMUSG00000036499.9 ENSMUSG00000036499 ENSMUST00000218517 Eea1 protein_coding Interval_37704 chr12 71260363 71260876 + 0 NA Intergenic Intergenic 9738 ENSMUSG00000113572.1 ENSMUSG00000113572 ENSMUST00000221823 Gm7959 processed_pseudogene Interval_54835 chr14 75702970 75703307 + 0 NA exon (ENSMUSG00000034893.9, exon 23 of 23) protein_coding-exon (ENSMUSG00000034893.9, exon 23 of 23) 29849 ENSMUSG00000034893.9 ENSMUSG00000034893 ENSMUST00000228081 Cog3 protein_coding Interval_103929 chr3 55064265 55064873 + 0 NA intron (ENSMUSG00000106589.1, intron 6 of 7) antisense-intron (ENSMUSG00000106589.1, intron 6 of 7) -6913 ENSMUSG00000105977.1 ENSMUSG00000105977 ENSMUST00000196588 Gm43555 processed_pseudogene Interval_96923 chr2 129560421 129560860 + 0 NA Intergenic Intergenic 5428 ENSMUSG00000087015.1 ENSMUSG00000087015 ENSMUST00000150181 Gm14041 antisense Interval_8262 chr1 136788740 136789769 + 0 NA TTS (ENSMUSG00000104360.1) processed_pseudogene-TTS (ENSMUSG00000104360.1) 266 ENSMUSG00000104360.1 ENSMUSG00000104360 ENSMUST00000193486 Gm8762 processed_pseudogene Interval_155458 chr8 33708566 33709341 + 0 NA Intergenic Intergenic 17152 ENSMUSG00000088856.1 ENSMUSG00000088856 ENSMUST00000158231 Gm24727 snoRNA Interval_132851 chr5 148315553 148315785 + 0 NA exon (ENSMUSG00000029651.16, exon 15 of 15) protein_coding-exon (ENSMUSG00000029651.16, exon 15 of 15) 79677 ENSMUSG00000029651.16 ENSMUSG00000029651 ENSMUST00000085554 Mtus2 protein_coding Interval_103101 chr3 35331916 35333455 + 0 NA Intergenic Intergenic 7071 ENSMUSG00000093499.1 ENSMUSG00000093499 ENSMUST00000177270 Gm25442 miRNA Interval_19986 chr10 111681353 111682132 + 0 NA Intergenic Intergenic -31930 ENSMUSG00000112357.1 ENSMUSG00000112357 ENSMUST00000217989 Gm47864 processed_pseudogene Interval_40466 chr12 105043028 105043342 + 0 NA TTS (ENSMUSG00000021102.4) protein_coding-TTS (ENSMUSG00000021102.4) 10497 ENSMUSG00000021102.4 ENSMUSG00000021102 ENSMUST00000220494 Glrx5 protein_coding Interval_163514 chr9 21808322 21809138 + 0 NA intron (ENSMUSG00000032198.9, intron 41 of 49) protein_coding-intron (ENSMUSG00000032198.9, intron 40 of 48) 1270 ENSMUSG00000098473.1 ENSMUSG00000098473 ENSMUST00000184374 Mir7083 miRNA Interval_78908 chr18 21433989 21435318 + 0 NA Intergenic Intergenic -53722 ENSMUSG00000096341.1 ENSMUSG00000096341 ENSMUST00000093714 Gm22886 snRNA Interval_48718 chr13 102037016 102037511 + 0 NA Intergenic Intergenic 78772 ENSMUSG00000102542.1 ENSMUSG00000102542 ENSMUST00000195109 Gm38133 TEC Interval_78600 chr18 15061970 15065124 + 0 NA promoter-TSS (ENSMUSG00000036225.15) protein_coding-promoter-TSS (ENSMUSG00000036225.15) 551 ENSMUSG00000036225.15 ENSMUSG00000036225 ENSMUST00000234685 Kctd1 protein_coding Interval_161886 chr8 123446424 123447975 + 0 NA promoter-TSS (ENSMUSG00000001482.15) protein_coding-promoter-TSS (ENSMUSG00000001482.15) 23672 ENSMUSG00000001482.15 ENSMUSG00000001482 ENSMUST00000212827 Def8 protein_coding Interval_150355 chr7 109873319 109873657 + 0 NA Intergenic Intergenic 24068 ENSMUSG00000035901.14 ENSMUSG00000035901 ENSMUST00000151923 Dennd5a protein_coding Interval_7625 chr1 132586430 132587499 + 0 NA intron (ENSMUSG00000026442.14, intron 27 of 31) protein_coding-intron (ENSMUSG00000026442.14, intron 24 of 26) 37548 ENSMUSG00000026442.14 ENSMUSG00000026442 ENSMUST00000189219 Nfasc protein_coding Interval_162737 chr9 8191913 8192105 + 0 NA Intergenic Intergenic -29961 ENSMUSG00000031998.5 ENSMUSG00000031998 ENSMUST00000213708 1700128F08Rik transcribed_processed_pseudogene Interval_136242 chr6 52243737 52243999 + 0 NA promoter-TSS (ENSMUSG00000086427.8) processed_transcript-promoter-TSS (ENSMUSG00000086427.8) -525 ENSMUSG00000086427.8 ENSMUSG00000086427 ENSMUST00000154027 Hoxa11os processed_transcript Interval_151519 chr7 123226294 123226786 + 0 NA intron (ENSMUSG00000030769.15, intron 2 of 2) protein_coding-intron (ENSMUSG00000030769.15, intron 1 of 16) -38649 ENSMUSG00000030769.15 ENSMUSG00000030769 ENSMUST00000206180 Slc5a11 protein_coding Interval_94203 chr2 85065147 85065392 + 0 NA intron (ENSMUSG00000033955.13, intron 4 of 9) protein_coding-intron (ENSMUSG00000033955.13, intron 2 of 7) 4305 ENSMUSG00000033955.13 ENSMUSG00000033955 ENSMUST00000238769 Tnks1bp1 protein_coding Interval_143308 chr7 5073466 5074165 + 0 NA intron (ENSMUSG00000030435.16, intron 7 of 11) protein_coding-intron (ENSMUSG00000030435.16, intron 7 of 11) -9940 ENSMUSG00000035203.16 ENSMUSG00000035203 ENSMUST00000155436 Epn1 protein_coding Interval_47435 chr13 84235748 84237733 + 0 NA intron (ENSMUSG00000035762.11, intron 1 of 1) protein_coding-intron (ENSMUSG00000035762.11, intron 1 of 11) -14531 ENSMUSG00000035762.11 ENSMUSG00000035762 ENSMUST00000225708 Tmem161b protein_coding Interval_17700 chr10 79629513 79630074 + 0 NA intron (ENSMUSG00000020312.12, intron 4 of 12) protein_coding-intron (ENSMUSG00000020312.12, intron 4 of 12) -7069 ENSMUSG00000020312.12 ENSMUSG00000020312 ENSMUST00000166450 Shc2 protein_coding Interval_93848 chr2 77456744 77457085 + 0 NA intron (ENSMUSG00000027016.17, intron 3 of 7) protein_coding-intron (ENSMUSG00000027016.17, intron 3 of 7) -5755 ENSMUSG00000085845.7 ENSMUSG00000085845 ENSMUST00000126572 Gm13944 antisense Interval_150421 chr7 110297117 110298006 + 0 NA Intergenic Intergenic -4440 ENSMUSG00000110102.1 ENSMUSG00000110102 ENSMUST00000210182 Gm9132 processed_pseudogene Interval_173290 chrX 77124528 77125079 + 0 NA Intergenic Intergenic 144097 ENSMUSG00000081697.1 ENSMUSG00000081697 ENSMUST00000119743 Gm14714 processed_pseudogene Interval_32717 chr11 109943017 109943305 + 0 NA intron (ENSMUSG00000020620.14, intron 27 of 37) protein_coding-intron (ENSMUSG00000020620.14, intron 28 of 38) 6845 ENSMUSG00000085629.1 ENSMUSG00000085629 ENSMUST00000149226 Gm11697 antisense Interval_92292 chr2 58468070 58468421 + 0 NA intron (ENSMUSG00000026836.15, intron 6 of 10) protein_coding-intron (ENSMUSG00000026836.15, intron 7 of 10) -1871 ENSMUSG00000091922.1 ENSMUSG00000091922 ENSMUST00000167423 Gm17409 TEC Interval_111398 chr4 20570305 20570673 + 0 NA intron (ENSMUSG00000055761.14, intron 1 of 5) protein_coding-intron (ENSMUSG00000055761.14, intron 1 of 4) 179393 ENSMUSG00000081964.1 ENSMUSG00000081964 ENSMUST00000117877 Gm11873 processed_pseudogene Interval_56960 chr14 124117025 124117836 + 0 NA intron (ENSMUSG00000025551.13, intron 3 of 4) protein_coding-intron (ENSMUSG00000025551.13, intron 3 of 4) 129795 ENSMUSG00000099994.1 ENSMUSG00000099994 ENSMUST00000190088 1700024B18Rik antisense Interval_34234 chr11 121487985 121488425 + 0 NA promoter-TSS (ENSMUSG00000039230.14) protein_coding-promoter-TSS (ENSMUSG00000039230.14) 31128 ENSMUSG00000039238.6 ENSMUSG00000039238 ENSMUST00000092298 Zfp750 protein_coding Interval_30123 chr11 89399473 89399887 + 0 NA intron (ENSMUSG00000047773.15, intron 21 of 21) protein_coding-intron (ENSMUSG00000047773.15, intron 3 of 3) 96957 ENSMUSG00000085798.1 ENSMUSG00000085798 ENSMUST00000140754 Gm2018 lincRNA Interval_163628 chr9 22774701 22774920 + 0 NA intron (ENSMUSG00000035919.16, intron 19 of 22) protein_coding-intron (ENSMUSG00000035919.16, intron 18 of 21) -1975 ENSMUSG00000098940.1 ENSMUSG00000098940 ENSMUST00000184937 Gm27639 snRNA Interval_42785 chr13 19437918 19439795 + 0 NA Intergenic Intergenic 26056 ENSMUSG00000104959.1 ENSMUSG00000104959 ENSMUST00000199241 Gm18131 processed_pseudogene Interval_159648 chr8 95997667 95999989 + 0 NA Intergenic Intergenic 77299 ENSMUSG00000110506.1 ENSMUSG00000110506 ENSMUST00000212919 Gm8637 processed_pseudogene Interval_35332 chr12 20727472 20727927 + 0 NA Intergenic Intergenic 61358 ENSMUSG00000116635.1 ENSMUSG00000116635 ENSMUST00000232444 Gm49699 transcribed_unprocessed_pseudogene Interval_82809 chr18 77154721 77155123 + 0 NA Intergenic Intergenic 31441 ENSMUSG00000073532.3 ENSMUSG00000073532 ENSMUST00000097520 Gm7276 bidirectional_promoter_lncRNA Interval_64636 chr16 13793210 13793754 + 0 NA intron (ENSMUSG00000022682.8, intron 9 of 17) protein_coding-intron (ENSMUSG00000022682.8, intron 9 of 17) 12774 ENSMUSG00000022682.8 ENSMUSG00000022682 ENSMUST00000023363 Rrn3 protein_coding Interval_106115 chr3 93359503 93360338 + 0 NA intron (ENSMUSG00000102476.1, intron 3 of 3) lincRNA-intron (ENSMUSG00000102476.1, intron 3 of 3) -28769 ENSMUSG00000106242.1 ENSMUSG00000106242 ENSMUST00000200618 Gm44353 miRNA Interval_60318 chr15 72832097 72832465 + 0 NA intron (ENSMUSG00000047921.17, intron 17 of 17) protein_coding-intron (ENSMUSG00000047921.17, intron 16 of 21) -21957 ENSMUSG00000106847.1 ENSMUSG00000106847 ENSMUST00000202826 Peg13 sense_intronic Interval_165182 chr9 45054700 45055907 + 0 NA promoter-TSS (ENSMUSG00000070305.10) protein_coding-promoter-TSS (ENSMUSG00000070305.10) 41 ENSMUSG00000110899.1 ENSMUSG00000110899 ENSMUST00000214803 Gm48840 TEC Interval_156920 chr8 61686452 61687531 + 0 NA intron (ENSMUSG00000058056.16, intron 8 of 8) protein_coding-intron (ENSMUSG00000058056.16, intron 9 of 19) 134525 ENSMUSG00000110131.1 ENSMUSG00000110131 ENSMUST00000210904 Gm18066 processed_pseudogene Interval_173510 chrX 97069757 97070108 + 0 NA Intergenic Intergenic -2664 ENSMUSG00000031212.3 ENSMUSG00000031212 ENSMUST00000033556 Pgr15l protein_coding Interval_93454 chr2 73163094 73163376 + 0 NA intron (ENSMUSG00000027108.15, intron 3 of 9) protein_coding-intron (ENSMUSG00000027108.15, intron 4 of 10) -13376 ENSMUSG00000083976.1 ENSMUSG00000083976 ENSMUST00000117304 Gm13664 processed_pseudogene Interval_77932 chr18 5720176 5720752 + 0 NA intron (ENSMUSG00000024238.15, intron 2 of 4) protein_coding-intron (ENSMUSG00000024238.15, intron 2 of 7) 105991 ENSMUSG00000080543.1 ENSMUSG00000080543 ENSMUST00000116893 Gm22709 miRNA Interval_164393 chr9 36725798 36727240 + 0 NA promoter-TSS (ENSMUSG00000032113.16) protein_coding-promoter-TSS (ENSMUSG00000032113.16) -3774 ENSMUSG00000032113.16 ENSMUSG00000032113 ENSMUST00000172742 Chek1 protein_coding Interval_43676 chr13 34897047 34898794 + 0 NA intron (ENSMUSG00000021413.9, intron 11 of 15) protein_coding-intron (ENSMUSG00000021413.9, intron 11 of 14) -3729 ENSMUSG00000021413.9 ENSMUSG00000021413 ENSMUST00000222834 Prpf4b protein_coding Interval_74757 chr17 56348287 56348784 + 0 NA intron (ENSMUSG00000024201.12, intron 2 of 5) protein_coding-intron (ENSMUSG00000024201.12, intron 1 of 22) 44128 ENSMUSG00000001228.14 ENSMUSG00000001228 ENSMUST00000139654 Uhrf1 protein_coding Interval_47898 chr13 94254041 94254455 + 0 NA intron (ENSMUSG00000021687.14, intron 1 of 8) protein_coding-intron (ENSMUSG00000021687.14, intron 1 of 8) -7690 ENSMUSG00000021687.14 ENSMUSG00000021687 ENSMUST00000138255 Scamp1 protein_coding Interval_167977 chr9 75196604 75198045 + 0 NA intron (ENSMUSG00000034593.16, intron 32 of 40) protein_coding-intron (ENSMUSG00000034593.16, intron 32 of 40) -34752 ENSMUSG00000033590.8 ENSMUSG00000033590 ENSMUST00000216529 Myo5c protein_coding Interval_158644 chr8 84934508 84935818 + 0 NA exon (ENSMUSG00000053693.16, exon 3 of 3) protein_coding-exon (ENSMUSG00000053693.16, exon 3 of 3) -9530 ENSMUSG00000092826.1 ENSMUSG00000092826 ENSMUST00000175085 Gm24197 miRNA Interval_28898 chr11 79138488 79139344 + 0 NA intron (ENSMUSG00000018334.18, intron 1 of 12) protein_coding-intron (ENSMUSG00000018334.18, intron 1 of 18) -73880 ENSMUSG00000081000.1 ENSMUSG00000081000 ENSMUST00000121698 Gm11200 processed_pseudogene Interval_40557 chr12 105730653 105731084 + 0 NA intron (ENSMUSG00000041323.6, intron 2 of 4) protein_coding-intron (ENSMUSG00000041323.6, intron 5 of 17) 12012 ENSMUSG00000041323.6 ENSMUSG00000041323 ENSMUST00000220702 Ak7 protein_coding Interval_42849 chr13 20344101 20344307 + 0 NA intron (ENSMUSG00000041112.17, intron 6 of 6) protein_coding-intron (ENSMUSG00000041112.17, intron 14 of 21) 61287 ENSMUSG00000041112.17 ENSMUSG00000041112 ENSMUST00000180767 Elmo1 protein_coding Interval_33132 chr11 114654874 114655571 + 0 NA Intergenic Intergenic -9386 ENSMUSG00000083769.1 ENSMUSG00000083769 ENSMUST00000120766 Gm11689 processed_pseudogene Interval_126619 chr5 90979101 90979398 + 0 NA intron (ENSMUSG00000029376.8, intron 6 of 7) protein_coding-intron (ENSMUSG00000029376.8, intron 6 of 7) 48132 ENSMUSG00000029376.8 ENSMUSG00000029376 ENSMUST00000201851 Mthfd2l protein_coding Interval_15530 chr10 50814153 50814968 + 0 NA TTS (ENSMUSG00000112594.1) processed_pseudogene-TTS (ENSMUSG00000112594.1) 835 ENSMUSG00000112594.1 ENSMUSG00000112594 ENSMUST00000220349 Gm48333 processed_pseudogene Interval_25474 chr11 48816234 48818816 + 0 NA promoter-TSS (ENSMUSG00000040365.14) protein_coding-promoter-TSS (ENSMUSG00000040365.14) -572 ENSMUSG00000040365.14 ENSMUSG00000040365 ENSMUST00000138019 Trim41 protein_coding Interval_77180 chr17 87142402 87143403 + 0 NA Intergenic Intergenic 35211 ENSMUSG00000037104.9 ENSMUSG00000037104 ENSMUST00000234421 Socs5 protein_coding Interval_30325 chr11 93637429 93637869 + 0 NA Intergenic Intergenic -13110 ENSMUSG00000082453.1 ENSMUSG00000082453 ENSMUST00000120917 Gm11502 processed_pseudogene Interval_30986 chr11 97589592 97590837 + 0 NA Intergenic Intergenic -14988 ENSMUSG00000038453.17 ENSMUSG00000038453 ENSMUST00000145845 Srcin1 protein_coding Interval_32663 chr11 109488547 109488957 + 0 NA intron (ENSMUSG00000020604.13, intron 3 of 3) protein_coding-intron (ENSMUSG00000020604.13, intron 3 of 13) 11072 ENSMUSG00000088106.1 ENSMUSG00000088106 ENSMUST00000157481 Gm22378 snRNA Interval_101827 chr3 9793835 9794134 + 0 NA intron (ENSMUSG00000027508.15, intron 1 of 2) protein_coding-intron (ENSMUSG00000027508.15, intron 1 of 7) 35744 ENSMUSG00000088004.1 ENSMUSG00000088004 ENSMUST00000157379 Gm24786 rRNA Interval_40369 chr12 104443667 104443934 + 0 NA Intergenic Intergenic -24400 ENSMUSG00000077398.1 ENSMUSG00000077398 ENSMUST00000104210 Gm24334 snoRNA Interval_131618 chr5 138842392 138842724 + 0 NA Intergenic Intergenic 22478 ENSMUSG00000094504.3 ENSMUSG00000094504 ENSMUST00000179205 Gm5294 protein_coding Interval_13490 chr10 18626808 18627073 + 0 NA intron (ENSMUSG00000019852.7, intron 18 of 33) protein_coding-intron (ENSMUSG00000019852.7, intron 18 of 32) -60985 ENSMUSG00000111173.1 ENSMUSG00000111173 ENSMUST00000215943 Gm48297 processed_pseudogene Interval_101617 chr3 7804684 7805759 + 0 NA Intergenic Intergenic -88114 ENSMUSG00000103399.1 ENSMUSG00000103399 ENSMUST00000194764 Gm29747 processed_pseudogene Interval_110468 chr3 158832579 158832873 + 0 NA Intergenic Intergenic -127720 ENSMUSG00000097966.1 ENSMUSG00000097966 ENSMUST00000183173 Gm9423 processed_pseudogene Interval_28964 chr11 79605026 79606326 + 0 NA intron (ENSMUSG00000017639.13, intron 1 of 14) protein_coding-intron (ENSMUSG00000017639.13, intron 1 of 14) 10511 ENSMUSG00000064486.1 ENSMUSG00000064486 ENSMUST00000082552 Gm23293 snRNA Interval_38679 chr12 80988476 80989743 + 0 NA Intergenic Intergenic -21031 ENSMUSG00000021135.8 ENSMUSG00000021135 ENSMUST00000220266 Slc10a1 protein_coding Interval_131746 chr5 139611299 139612019 + 0 NA Intergenic Intergenic 67761 ENSMUSG00000029546.12 ENSMUSG00000029546 ENSMUST00000174792 Uncx protein_coding Interval_84969 chr19 20743322 20743852 + 0 NA Intergenic Intergenic -16025 ENSMUSG00000024747.3 ENSMUSG00000024747 ENSMUST00000025656 Aldh1a7 protein_coding Interval_14733 chr10 39450332 39452177 + 0 NA intron (ENSMUSG00000019843.14, intron 1 of 2) protein_coding-intron (ENSMUSG00000019843.14, intron 2 of 13) -26258 ENSMUSG00000085799.1 ENSMUSG00000085799 ENSMUST00000147879 Gm6963 processed_pseudogene Interval_35759 chr12 29067843 29068619 + 0 NA Intergenic Intergenic -32937 ENSMUSG00000089583.1 ENSMUSG00000089583 ENSMUST00000158958 Gm23342 rRNA Interval_145280 chr7 31123417 31123828 + 0 NA intron (ENSMUSG00000019194.15, intron 2 of 4) protein_coding-intron (ENSMUSG00000019194.15, intron 2 of 5) 3222 ENSMUSG00000019194.15 ENSMUSG00000019194 ENSMUST00000211923 Scn1b protein_coding Interval_27260 chr11 65065438 65066377 + 0 NA intron (ENSMUSG00000033389.16, intron 4 of 20) protein_coding-intron (ENSMUSG00000033389.16, intron 4 of 20) 1900 ENSMUSG00000076394.1 ENSMUSG00000076394 ENSMUST00000102439 Gm25991 miRNA Interval_66403 chr16 33677757 33678238 + 0 NA Intergenic Intergenic -6373 ENSMUSG00000075254.12 ENSMUSG00000075254 ENSMUST00000146518 Heg1 protein_coding Interval_133019 chr5 149322132 149322881 + 0 NA Intergenic Intergenic -34638 ENSMUSG00000107317.1 ENSMUSG00000107317 ENSMUST00000200934 Gm19719 antisense Interval_169573 chr9 99217929 99218789 + 0 NA Intergenic Intergenic 2208 ENSMUSG00000101498.1 ENSMUSG00000101498 ENSMUST00000185530 Gm2950 processed_pseudogene Interval_40800 chr12 108497085 108497426 + 0 NA intron (ENSMUSG00000058070.14, intron 2 of 18) protein_coding-intron (ENSMUSG00000058070.14, intron 4 of 21) 25402 ENSMUSG00000058070.14 ENSMUSG00000058070 ENSMUST00000123035 Eml1 protein_coding Interval_57950 chr15 25706425 25707963 + 0 NA intron (ENSMUSG00000022272.17, intron 2 of 21) protein_coding-intron (ENSMUSG00000022272.17, intron 3 of 40) 25396 ENSMUSG00000089639.1 ENSMUSG00000089639 ENSMUST00000161524 Gm2862 processed_pseudogene Interval_124916 chr5 60556520 60557301 + 0 NA Intergenic Intergenic -21720 ENSMUSG00000106548.1 ENSMUSG00000106548 ENSMUST00000196614 Gm43390 processed_pseudogene Interval_85757 chr19 30483463 30484347 + 0 NA Intergenic Intergenic 7380 ENSMUSG00000118374.1 ENSMUSG00000118374 ENSMUST00000236809 Gm17885 processed_pseudogene Interval_102929 chr3 32876748 32878674 + 0 NA intron (ENSMUSG00000056900.13, intron 7 of 14) protein_coding-intron (ENSMUSG00000056900.13, intron 7 of 20) 2897 ENSMUSG00000081883.2 ENSMUSG00000081883 ENSMUST00000119937 Gm15574 processed_pseudogene Interval_45360 chr13 54654972 54655224 + 0 NA intron (ENSMUSG00000025873.16, intron 5 of 5) protein_coding-intron (ENSMUSG00000025873.16, intron 8 of 10) 32710 ENSMUSG00000034928.16 ENSMUSG00000034928 ENSMUST00000150626 Rnf44 protein_coding Interval_101203 chr2 179452713 179452898 + 0 NA intron (ENSMUSG00000000305.12, intron 2 of 2) protein_coding-intron (ENSMUSG00000000305.12, intron 2 of 15) 37869 ENSMUSG00000039138.1 ENSMUSG00000039138 ENSMUST00000041998 4930591A17Rik lincRNA Interval_152776 chr7 137458213 137458758 + 0 NA intron (ENSMUSG00000031068.8, intron 5 of 6) protein_coding-intron (ENSMUSG00000031068.8, intron 4 of 10) 20820 ENSMUSG00000031068.8 ENSMUSG00000031068 ENSMUST00000211598 Glrx3 protein_coding Interval_24153 chr11 30771348 30773014 + 0 NA promoter-TSS (ENSMUSG00000040850.17) protein_coding-promoter-TSS (ENSMUSG00000040850.17) -17220 ENSMUSG00000083990.1 ENSMUSG00000083990 ENSMUST00000121590 Gm12101 processed_pseudogene Interval_110281 chr3 155726357 155726782 + 0 NA Intergenic Intergenic 28671 ENSMUSG00000103981.1 ENSMUSG00000103981 ENSMUST00000193016 Gm37449 processed_pseudogene Interval_166428 chr9 59409186 59409405 + 0 NA intron (ENSMUSG00000025234.11, intron 7 of 13) protein_coding-intron (ENSMUSG00000025234.11, intron 7 of 11) 62938 ENSMUSG00000090516.1 ENSMUSG00000090516 ENSMUST00000171632 Rps11-ps1 processed_pseudogene Interval_159618 chr8 95816050 95818479 + 0 NA intron (ENSMUSG00000074136.9, intron 3 of 3) antisense-intron (ENSMUSG00000074136.9, intron 2 of 2) 427 ENSMUSG00000110489.1 ENSMUSG00000110489 ENSMUST00000212957 Gm31659 lincRNA Interval_24243 chr11 31750657 31751916 + 0 NA Intergenic Intergenic 52638 ENSMUSG00000103635.1 ENSMUSG00000103635 ENSMUST00000192490 Gm38061 TEC Interval_153933 chr8 11308677 11309394 + 0 NA intron (ENSMUSG00000031502.11, intron 1 of 52) protein_coding-intron (ENSMUSG00000031502.11, intron 1 of 51) 3654 ENSMUSG00000031502.11 ENSMUSG00000031502 ENSMUST00000209000 Col4a1 protein_coding Interval_143040 chr6 148825650 148826428 + 0 NA intron (ENSMUSG00000040029.15, intron 1 of 9) protein_coding-intron (ENSMUSG00000040029.15, intron 1 of 24) -5413 ENSMUSG00000107909.1 ENSMUSG00000107909 ENSMUST00000204670 2610017A05Rik TEC Interval_147103 chr7 62980557 62981761 + 0 NA Intergenic Intergenic 155131 ENSMUSG00000109057.1 ENSMUSG00000109057 ENSMUST00000207503 Gm44741 TEC Interval_59228 chr15 49154242 49154552 + 0 NA Intergenic Intergenic -23433 ENSMUSG00000114976.1 ENSMUSG00000114976 ENSMUST00000227927 Gm2333 processed_pseudogene Interval_4157 chr1 71018073 71019511 + 0 NA Intergenic Intergenic 21238 ENSMUSG00000089965.1 ENSMUSG00000089965 ENSMUST00000159588 Gm16236 processed_pseudogene Interval_95954 chr2 118662743 118663891 + 0 NA promoter-TSS (ENSMUSG00000074923.10) protein_coding-promoter-TSS (ENSMUSG00000074923.10) -445 ENSMUSG00000074923.10 ENSMUSG00000074923 ENSMUST00000132577 Pak6 protein_coding Interval_94230 chr2 85784276 85784466 + 0 NA intron (ENSMUSG00000033850.5, intron 1 of 1) protein_coding-intron (ENSMUSG00000033850.5, intron 1 of 1) 2350 ENSMUSG00000033850.5 ENSMUSG00000033850 ENSMUST00000047870 Olfr1015 protein_coding Interval_111172 chr4 13805964 13807035 + 0 NA intron (ENSMUSG00000006586.15, intron 1 of 10) protein_coding-intron (ENSMUSG00000006586.15, intron 1 of 10) 55202 ENSMUSG00000006586.15 ENSMUSG00000006586 ENSMUST00000139736 Runx1t1 protein_coding Interval_156819 chr8 60842257 60842700 + 0 NA Intergenic Intergenic -3834 ENSMUSG00000110261.1 ENSMUSG00000110261 ENSMUST00000211229 Gm45485 processed_pseudogene Interval_37192 chr12 59349100 59349331 + 0 NA Intergenic Intergenic 2302 ENSMUSG00000112671.1 ENSMUSG00000112671 ENSMUST00000218455 Gm18242 processed_pseudogene Interval_91479 chr2 39165488 39166503 + 0 NA intron (ENSMUSG00000035236.17, intron 2 of 17) protein_coding-intron (ENSMUSG00000035236.17, intron 2 of 17) -3760 ENSMUSG00000082315.2 ENSMUSG00000082315 ENSMUST00000121253 Gm16523 transcribed_processed_pseudogene Interval_72502 chr17 30243467 30243654 + 0 NA intron (ENSMUSG00000062202.14, intron 1 of 2) protein_coding-intron (ENSMUSG00000062202.14, intron 9 of 11) 66085 ENSMUSG00000117974.1 ENSMUSG00000117974 ENSMUST00000236459 Tuba-rs1 transcribed_processed_pseudogene Interval_20756 chr10 120765478 120766136 + 0 NA promoter-TSS (ENSMUSG00000044544.4) lincRNA-promoter-TSS (ENSMUSG00000044544.4) 75 ENSMUSG00000044544.4 ENSMUSG00000044544 ENSMUST00000056994 4921513I03Rik lincRNA Interval_116457 chr4 112890449 112890730 + 0 NA intron (ENSMUSG00000087194.9, intron 30 of 47) protein_coding-intron (ENSMUSG00000087194.9, intron 31 of 48) -33107 ENSMUSG00000085878.1 ENSMUSG00000085878 ENSMUST00000134494 Gm12823 antisense Interval_11895 chr1 186842013 186842856 + 0 NA Intergenic Intergenic -84528 ENSMUSG00000103503.1 ENSMUSG00000103503 ENSMUST00000194671 1700023G09Rik lincRNA Interval_124846 chr5 56423337 56423570 + 0 NA intron (ENSMUSG00000106326.1, intron 1 of 1) transcribed_processed_pseudogene-intron (ENSMUSG00000106326.1, intron 1 of 1) 9243 ENSMUSG00000106326.1 ENSMUSG00000106326 ENSMUST00000197497 Gm42977 transcribed_processed_pseudogene Interval_40624 chr12 106083646 106084186 + 0 NA promoter-TSS (ENSMUSG00000113427.1) lincRNA-promoter-TSS (ENSMUSG00000113427.1) -454 ENSMUSG00000113427.1 ENSMUSG00000113427 ENSMUST00000222979 Gm46378 lincRNA Interval_71191 chr17 21035386 21036295 + 0 NA TTS (ENSMUSG00000067942.6) protein_coding-TTS (ENSMUSG00000067942.6) 24936 ENSMUSG00000101511.1 ENSMUSG00000101511 ENSMUST00000189217 Gm5681 unprocessed_pseudogene Interval_14113 chr10 27629847 27630036 + 0 NA Intergenic Intergenic -14613 ENSMUSG00000103931.1 ENSMUSG00000103931 ENSMUST00000192114 Gm36962 TEC Interval_173442 chrX 93700449 93701139 + 0 NA intron (ENSMUSG00000035246.16, intron 1 of 7) protein_coding-intron (ENSMUSG00000035246.16, intron 1 of 7) -30768 ENSMUSG00000035246.16 ENSMUSG00000035246 ENSMUST00000146263 Pcyt1b protein_coding Interval_137668 chr6 78365812 78366025 + 0 NA Intergenic Intergenic -4739 ENSMUSG00000071356.7 ENSMUSG00000071356 ENSMUST00000204760 Reg3b protein_coding Interval_27790 chr11 70009087 70009290 + 0 NA TTS (ENSMUSG00000018574.14) protein_coding-TTS (ENSMUSG00000018574.14) -2855 ENSMUSG00000065534.1 ENSMUSG00000065534 ENSMUST00000083600 Mir324 miRNA Interval_54275 chr14 67050903 67051137 + 0 NA intron (ENSMUSG00000022052.9, intron 2 of 9) protein_coding-intron (ENSMUSG00000022052.9, intron 2 of 9) -7491 ENSMUSG00000022052.9 ENSMUSG00000022052 ENSMUST00000225469 Ppp2r2a protein_coding Interval_53219 chr14 55208557 55208840 + 0 NA Intergenic Intergenic -25956 ENSMUSG00000022209.12 ENSMUSG00000022209 ENSMUST00000165432 Dhrs2 protein_coding Interval_56077 chr14 105394937 105395159 + 0 NA Intergenic Intergenic -32511 ENSMUSG00000115548.1 ENSMUSG00000115548 ENSMUST00000226670 5430440P10Rik lincRNA Interval_152534 chr7 133959017 133959873 + 0 NA intron (ENSMUSG00000054555.11, intron 1 of 12) protein_coding-intron (ENSMUSG00000054555.11, intron 11 of 22) -19704 ENSMUSG00000093032.1 ENSMUSG00000093032 ENSMUST00000175291 Gm23631 miRNA Interval_135622 chr6 41703107 41704418 + 0 NA exon (ENSMUSG00000029866.13, exon 2 of 19) protein_coding-exon (ENSMUSG00000029866.13, exon 2 of 19) -7576 ENSMUSG00000103788.1 ENSMUSG00000103788 ENSMUST00000192406 Gm37527 TEC Interval_155162 chr8 27142325 27143675 + 0 NA promoter-TSS (ENSMUSG00000097262.2) antisense-promoter-TSS (ENSMUSG00000097262.2) 90 ENSMUSG00000097262.2 ENSMUSG00000097262 ENSMUST00000181424 4933416M07Rik antisense Interval_19799 chr10 109167259 109167463 + 0 NA Intergenic Intergenic -77086 ENSMUSG00000088554.1 ENSMUSG00000088554 ENSMUST00000157929 Gm22097 misc_RNA Interval_126820 chr5 93162807 93163956 + 0 NA intron (ENSMUSG00000058013.11, intron 7 of 9) protein_coding-intron (ENSMUSG00000058013.11, intron 7 of 9) -13589 ENSMUSG00000107019.1 ENSMUSG00000107019 ENSMUST00000202150 Gm43682 TEC Interval_60468 chr15 74052524 74052741 + 0 NA Intergenic Intergenic 28879 ENSMUSG00000075609.3 ENSMUSG00000075609 ENSMUST00000100555 Gm7935 processed_pseudogene Interval_126014 chr5 76841789 76844238 + 0 NA TTS (ENSMUSG00000036377.19) protein_coding-TTS (ENSMUSG00000036377.19) 52065 ENSMUSG00000055923.16 ENSMUSG00000055923 ENSMUST00000134805 Aasdh protein_coding Interval_136347 chr6 53593799 53594064 + 0 NA intron (ENSMUSG00000053007.9, intron 2 of 3) protein_coding-intron (ENSMUSG00000053007.9, intron 5 of 10) -73839 ENSMUSG00000108004.1 ENSMUSG00000108004 ENSMUST00000204451 Gm44080 TEC Interval_54802 chr14 75229436 75230202 + 0 NA TTS (ENSMUSG00000021998.16) protein_coding-TTS (ENSMUSG00000021998.16) -30548 ENSMUSG00000090054.1 ENSMUSG00000090054 ENSMUST00000161819 Gm15629 antisense Interval_59328 chr15 51696356 51696964 + 0 NA Intergenic Intergenic -67025 ENSMUSG00000115563.1 ENSMUSG00000115563 ENSMUST00000227000 Gm34562 lincRNA Interval_45130 chr13 52555944 52557084 + 0 NA Intergenic Intergenic -25235 ENSMUSG00000047842.7 ENSMUSG00000047842 ENSMUST00000057442 Diras2 protein_coding Interval_60807 chr15 76878767 76879877 + 0 NA promoter-TSS (ENSMUSG00000033669.8) protein_coding-promoter-TSS (ENSMUSG00000033669.8) -9 ENSMUSG00000033669.8 ENSMUSG00000033669 ENSMUST00000229990 Zfp7 protein_coding Interval_81356 chr18 59075825 59077054 + 0 NA TTS (ENSMUSG00000050875.11) protein_coding-TTS (ENSMUSG00000050875.11) 13973 ENSMUSG00000050875.11 ENSMUSG00000050875 ENSMUST00000175830 Minar2 protein_coding Interval_79536 chr18 33129791 33130001 + 0 NA intron (ENSMUSG00000038128.7, intron 8 of 14) protein_coding-intron (ENSMUSG00000038128.7, intron 5 of 10) 83925 ENSMUSG00000024378.9 ENSMUSG00000024378 ENSMUST00000141617 Stard4 protein_coding Interval_128478 chr5 113565888 113566284 + 0 NA intron (ENSMUSG00000063430.9, intron 4 of 8) protein_coding-intron (ENSMUSG00000063430.9, intron 4 of 8) -12702 ENSMUSG00000063430.9 ENSMUSG00000063430 ENSMUST00000198673 Wscd2 protein_coding Interval_154609 chr8 22043799 22044279 + 0 NA intron (ENSMUSG00000006567.11, intron 1 of 21) protein_coding-intron (ENSMUSG00000006567.11, intron 1 of 20) 15980 ENSMUSG00000006567.11 ENSMUSG00000006567 ENSMUST00000110738 Atp7b protein_coding Interval_37332 chr12 65162655 65162963 + 0 NA intron (ENSMUSG00000047534.17, intron 1 of 6) protein_coding-intron (ENSMUSG00000047534.17, intron 1 of 13) 9789 ENSMUSG00000047534.17 ENSMUSG00000047534 ENSMUST00000131753 Mis18bp1 protein_coding Interval_40619 chr12 106060505 106060738 + 0 NA intron (ENSMUSG00000021115.15, intron 10 of 13) protein_coding-intron (ENSMUSG00000021115.15, intron 10 of 14) -23749 ENSMUSG00000113427.1 ENSMUSG00000113427 ENSMUST00000222979 Gm46378 lincRNA Interval_79847 chr18 35555360 35556448 + 0 NA promoter-TSS (ENSMUSG00000117869.1) processed_transcript-promoter-TSS (ENSMUSG00000117869.1) -1128 ENSMUSG00000065649.1 ENSMUSG00000065649 ENSMUST00000083715 Snora74a snoRNA Interval_80319 chr18 39162540 39164228 + 0 NA intron (ENSMUSG00000036452.18, intron 11 of 22) protein_coding-intron (ENSMUSG00000036452.18, intron 11 of 22) -128051 ENSMUSG00000036452.18 ENSMUSG00000036452 ENSMUST00000133247 Arhgap26 protein_coding Interval_110930 chr4 10438632 10438886 + 0 NA TTS (ENSMUSG00000084215.3) processed_pseudogene-TTS (ENSMUSG00000084215.3) 984 ENSMUSG00000084215.3 ENSMUSG00000084215 ENSMUST00000119515 Gm11814 processed_pseudogene Interval_44506 chr13 45493570 45494439 + 0 NA Intergenic Intergenic -7674 ENSMUSG00000089211.1 ENSMUSG00000089211 ENSMUST00000158586 Gm23387 snRNA Interval_13022 chr10 9496807 9497412 + 0 NA Intergenic Intergenic -9907 ENSMUSG00000112307.1 ENSMUSG00000112307 ENSMUST00000218957 Gm48751 TEC Interval_129012 chr5 116714256 116714684 + 0 NA intron (ENSMUSG00000106909.1, intron 2 of 2) lincRNA-intron (ENSMUSG00000106909.1, intron 2 of 2) -80906 ENSMUSG00000107369.1 ENSMUSG00000107369 ENSMUST00000201478 Gstm2-ps1 processed_pseudogene Interval_34745 chr12 9278416 9279267 + 0 NA Intergenic Intergenic -92597 ENSMUSG00000113913.1 ENSMUSG00000113913 ENSMUST00000223136 Gm46323 lincRNA Interval_129915 chr5 123045711 123046392 + 0 NA intron (ENSMUSG00000029477.14, intron 1 of 3) protein_coding-intron (ENSMUSG00000029477.14, intron 1 of 4) 954 ENSMUSG00000029477.14 ENSMUSG00000029477 ENSMUST00000145257 Morn3 protein_coding Interval_106046 chr3 91701803 91702350 + 0 NA Intergenic Intergenic 308789 ENSMUSG00000077085.1 ENSMUSG00000077085 ENSMUST00000103897 Gm23697 miRNA Interval_95802 chr2 116696061 116696297 + 0 NA Intergenic Intergenic -167689 ENSMUSG00000081787.1 ENSMUSG00000081787 ENSMUST00000120190 Gm13991 processed_pseudogene Interval_83252 chr18 83011532 83012510 + 0 NA promoter-TSS (ENSMUSG00000118094.1) processed_transcript-promoter-TSS (ENSMUSG00000118094.1) 118 ENSMUSG00000118094.1 ENSMUSG00000118094 ENSMUST00000236941 AC142100.1 processed_transcript Interval_33808 chr11 118666140 118666585 + 0 NA intron (ENSMUSG00000025576.17, intron 3 of 14) protein_coding-intron (ENSMUSG00000025576.17, intron 3 of 14) -125010 ENSMUSG00000085059.1 ENSMUSG00000085059 ENSMUST00000146016 Gm11750 lincRNA Interval_143288 chr7 4970037 4970397 + 0 NA intron (ENSMUSG00000085272.7, intron 2 of 3) protein_coding-intron (ENSMUSG00000085272.7, intron 2 of 3) 744 ENSMUSG00000085272.7 ENSMUSG00000085272 ENSMUST00000133272 Sbk3 protein_coding Interval_98555 chr2 153191682 153191922 + 0 NA intron (ENSMUSG00000068040.10, intron 8 of 8) protein_coding-intron (ENSMUSG00000068040.10, intron 8 of 17) -8446 ENSMUSG00000068040.10 ENSMUSG00000068040 ENSMUST00000149390 Tm9sf4 protein_coding Interval_128499 chr5 113664372 113665197 + 0 NA Intergenic Intergenic -14388 ENSMUSG00000042190.12 ENSMUSG00000042190 ENSMUST00000151460 Cmklr1 protein_coding Interval_26032 chr11 53584810 53585413 + 0 NA intron (ENSMUSG00000018395.19, intron 8 of 17) protein_coding-intron (ENSMUSG00000018395.19, intron 8 of 16) 17714 ENSMUSG00000018395.19 ENSMUSG00000018395 ENSMUST00000130037 Kif3a protein_coding Interval_63573 chr15 102120242 102120738 + 0 NA intron (ENSMUSG00000036966.15, intron 6 of 10) protein_coding-intron (ENSMUSG00000036966.15, intron 2 of 5) 10412 ENSMUSG00000036966.15 ENSMUSG00000036966 ENSMUST00000156475 Spryd3 protein_coding Interval_110123 chr3 153497805 153498145 + 0 NA intron (ENSMUSG00000052544.9, intron 1 of 2) protein_coding-intron (ENSMUSG00000052544.9, intron 1 of 2) 11767 ENSMUSG00000052544.9 ENSMUSG00000052544 ENSMUST00000198775 St6galnac3 protein_coding Interval_116835 chr4 117580390 117582077 + 0 NA intron (ENSMUSG00000033423.16, intron 1 of 7) protein_coding-intron (ENSMUSG00000033423.16, intron 3 of 8) 11099 ENSMUSG00000087807.1 ENSMUSG00000087807 ENSMUST00000157182 Gm25559 miRNA Interval_24934 chr11 41678273 41678439 + 0 NA Intergenic Intergenic -31986 ENSMUSG00000087306.7 ENSMUSG00000087306 ENSMUST00000139508 A230004M16Rik processed_transcript Interval_170420 chr9 107799213 107799419 + 0 NA intron (ENSMUSG00000032582.14, intron 2 of 15) protein_coding-intron (ENSMUSG00000032582.14, intron 7 of 20) 20696 ENSMUSG00000102670.1 ENSMUSG00000102670 ENSMUST00000193842 Gm37436 TEC Interval_76033 chr17 74487042 74487561 + 0 NA Intergenic Intergenic -4543 ENSMUSG00000024072.9 ENSMUSG00000024072 ENSMUST00000234853 Yipf4 protein_coding Interval_137100 chr6 67332654 67332903 + 0 NA intron (ENSMUSG00000018341.12, intron 2 of 9) protein_coding-intron (ENSMUSG00000018341.12, intron 8 of 15) 6916 ENSMUSG00000018341.12 ENSMUSG00000018341 ENSMUST00000018485 Il12rb2 protein_coding Interval_33823 chr11 118744503 118745364 + 0 NA intron (ENSMUSG00000025576.17, intron 2 of 14) protein_coding-intron (ENSMUSG00000025576.17, intron 2 of 14) -46439 ENSMUSG00000085059.1 ENSMUSG00000085059 ENSMUST00000146016 Gm11750 lincRNA Interval_188 JH792828.1 255955 257715 + 0 NA NA NA NA NA Interval_33530 chr11 117063260 117063840 + 0 NA Intergenic Intergenic 5125 ENSMUSG00000085104.1 ENSMUSG00000085104 ENSMUST00000139704 Gm11731 lincRNA Interval_114998 chr4 88302679 88303585 + 0 NA promoter-TSS (ENSMUSG00000038368.16) protein_coding-promoter-TSS (ENSMUSG00000038368.16) -97218 ENSMUSG00000038368.16 ENSMUSG00000038368 ENSMUST00000107147 Focad protein_coding Interval_64700 chr16 14291079 14292831 + 0 NA promoter-TSS (ENSMUSG00000018830.10) protein_coding-promoter-TSS (ENSMUSG00000018830.10) -590 ENSMUSG00000018830.10 ENSMUSG00000018830 ENSMUST00000230643 Myh11 protein_coding Interval_15789 chr10 56681574 56681778 + 0 NA Intergenic Intergenic 25482 ENSMUSG00000045048.7 ENSMUSG00000045048 ENSMUST00000062156 Gm9795 processed_pseudogene Interval_13389 chr10 17697320 17698491 + 0 NA Intergenic Intergenic -25328 ENSMUSG00000039910.10 ENSMUSG00000039910 ENSMUST00000218370 Cited2 protein_coding Interval_43006 chr13 22861206 22861481 + 0 NA Intergenic Intergenic -3782 ENSMUSG00000063998.4 ENSMUSG00000063998 ENSMUST00000073728 Vmn1r211 protein_coding Interval_166934 chr9 64007310 64007554 + 0 NA intron (ENSMUSG00000036867.7, intron 3 of 4) protein_coding-intron (ENSMUSG00000036867.7, intron 3 of 3) 14600 ENSMUSG00000036867.7 ENSMUSG00000036867 ENSMUST00000179458 Smad6 protein_coding Interval_169501 chr9 98537571 98539026 + 0 NA Intergenic Intergenic 25313 ENSMUSG00000051074.4 ENSMUSG00000051074 ENSMUST00000058992 4930579K19Rik processed_transcript Interval_19406 chr10 98975506 98976479 + 0 NA intron (ENSMUSG00000019943.10, intron 2 of 8) protein_coding-intron (ENSMUSG00000019943.10, intron 2 of 20) -14888 ENSMUSG00000019943.10 ENSMUSG00000019943 ENSMUST00000218419 Atp2b1 protein_coding Interval_70972 chr17 16943333 16943895 + 0 NA Intergenic Intergenic -7938 ENSMUSG00000060149.7 ENSMUSG00000060149 ENSMUST00000071374 BC002059 lincRNA Interval_53301 chr14 55879697 55880047 + 0 NA exon (ENSMUSG00000040380.14, exon 3 of 3) protein_coding-exon (ENSMUSG00000040380.14, exon 3 of 3) 4360 ENSMUSG00000040380.14 ENSMUSG00000040380 ENSMUST00000172378 Cbln3 protein_coding Interval_39624 chr12 91644126 91644327 + 0 NA intron (ENSMUSG00000020961.15, intron 4 of 4) protein_coding-intron (ENSMUSG00000020961.15, intron 5 of 6) -26549 ENSMUSG00000113943.1 ENSMUSG00000113943 ENSMUST00000222304 Gm47804 lincRNA Interval_42259 chr13 11170674 11171644 + 0 NA Intergenic Intergenic 196736 ENSMUSG00000113673.1 ENSMUSG00000113673 ENSMUST00000221075 Gm47486 lincRNA Interval_165454 chr9 48257758 48259094 + 0 NA intron (ENSMUSG00000044229.9, intron 2 of 8) protein_coding-intron (ENSMUSG00000044229.9, intron 1 of 10) 82428 ENSMUSG00000032028.15 ENSMUSG00000032028 ENSMUST00000142667 Nxpe2 protein_coding Interval_167355 chr9 67758763 67760831 + 0 NA exon (ENSMUSG00000055125.7, exon 1 of 1) lincRNA-exon (ENSMUSG00000055125.7, exon 1 of 1) 360 ENSMUSG00000091956.2 ENSMUSG00000091956 ENSMUST00000171652 C2cd4b protein_coding Interval_142688 chr6 145015063 145015416 + 0 NA TTS (ENSMUSG00000030268.17) protein_coding-TTS (ENSMUSG00000030268.17) 22949 ENSMUSG00000088867.1 ENSMUSG00000088867 ENSMUST00000158242 Gm23071 rRNA Interval_149465 chr7 98814881 98816726 + 0 NA Intergenic Intergenic -32003 ENSMUSG00000015957.12 ENSMUSG00000015957 ENSMUST00000208062 Wnt11 protein_coding Interval_157519 chr8 71172447 71172895 + 0 NA Intergenic Intergenic -51278 ENSMUSG00000110664.1 ENSMUSG00000110664 ENSMUST00000212311 Aprt-ps processed_pseudogene Interval_85481 chr19 27323071 27324142 + 0 NA exon (ENSMUSG00000047298.3, exon 1 of 2) protein_coding-exon (ENSMUSG00000047298.3, exon 1 of 2) 1018 ENSMUSG00000047298.3 ENSMUSG00000047298 ENSMUST00000056708 Kcnv2 protein_coding Interval_126883 chr5 96691256 96691769 + 0 NA intron (ENSMUSG00000034687.8, intron 36 of 73) protein_coding-intron (ENSMUSG00000034687.8, intron 36 of 73) 47852 ENSMUSG00000106526.1 ENSMUSG00000106526 ENSMUST00000200077 Gm42604 antisense Interval_159050 chr8 89063379 89064547 + 0 NA Intergenic Intergenic -19801 ENSMUSG00000031665.7 ENSMUSG00000031665 ENSMUST00000034090 Sall1 protein_coding Interval_123759 chr5 35278587 35281184 + 0 NA exon (ENSMUSG00000045318.6, exon 1 of 1) protein_coding-exon (ENSMUSG00000045318.6, exon 1 of 1) 1566 ENSMUSG00000045318.6 ENSMUSG00000045318 ENSMUST00000049545 Adra2c protein_coding Interval_97451 chr2 136687112 136687550 + 0 NA Intergenic Intergenic 7370 ENSMUSG00000103066.1 ENSMUSG00000103066 ENSMUST00000193814 Gm36967 TEC Interval_111195 chr4 14621632 14622080 + 0 NA promoter-TSS (ENSMUSG00000040569.13) protein_coding-promoter-TSS (ENSMUSG00000040569.13) -359 ENSMUSG00000040569.13 ENSMUSG00000040569 ENSMUST00000143105 Slc26a7 protein_coding Interval_120891 chr4 151351745 151352526 + 0 NA intron (ENSMUSG00000014592.21, intron 5 of 24) protein_coding-intron (ENSMUSG00000014592.21, intron 5 of 23) -24335 ENSMUSG00000085593.1 ENSMUSG00000085593 ENSMUST00000129097 4930589P08Rik antisense Interval_133286 chr5 151168074 151168501 + 0 NA intron (ENSMUSG00000107011.1, intron 2 of 5) protein_coding-intron (ENSMUSG00000016128.14, intron 1 of 13) -59552 ENSMUSG00000016128.14 ENSMUSG00000016128 ENSMUST00000202866 Stard13 protein_coding Interval_149525 chr7 99332917 99333209 + 0 NA intron (ENSMUSG00000055407.14, intron 3 of 3) protein_coding-intron (ENSMUSG00000055407.14, intron 3 of 3) 11863 ENSMUSG00000109460.1 ENSMUSG00000109460 ENSMUST00000129058 Gm45591 sense_intronic Interval_46234 chr13 62846370 62846628 + 0 NA intron (ENSMUSG00000021456.8, intron 4 of 6) protein_coding-intron (ENSMUSG00000021456.8, intron 4 of 6) 9810 ENSMUSG00000021456.8 ENSMUSG00000021456 ENSMUST00000222000 Fbp2 protein_coding Interval_17452 chr10 76905653 76906815 + 0 NA promoter-TSS (ENSMUSG00000001120.15) protein_coding-promoter-TSS (ENSMUSG00000001120.15) 77667 ENSMUSG00000102522.1 ENSMUSG00000102522 ENSMUST00000194879 Gm37782 TEC Interval_60058 chr15 64325957 64326147 + 0 NA intron (ENSMUSG00000022377.16, intron 2 of 30) protein_coding-intron (ENSMUSG00000022377.16, intron 2 of 30) 2965 ENSMUSG00000115646.1 ENSMUSG00000115646 ENSMUST00000228336 Gm10926 TEC Interval_148712 chr7 84465571 84466066 + 0 NA Intergenic Intergenic -21267 ENSMUSG00000109347.1 ENSMUSG00000109347 ENSMUST00000208295 Gm45175 lincRNA Interval_140387 chr6 117758496 117759492 + 0 NA Intergenic Intergenic -41731 ENSMUSG00000099869.6 ENSMUSG00000099869 ENSMUST00000187642 1700030F04Rik lincRNA Interval_83551 chr18 89192215 89192465 + 0 NA intron (ENSMUSG00000034028.16, intron 1 of 1) protein_coding-intron (ENSMUSG00000034028.16, intron 1 of 7) -5142 ENSMUSG00000034028.16 ENSMUSG00000034028 ENSMUST00000236835 Cd226 protein_coding Interval_129368 chr5 119584464 119587656 + 0 NA intron (ENSMUSG00000087516.7, intron 1 of 5) antisense-intron (ENSMUSG00000087516.7, intron 1 of 5) 12144 ENSMUSG00000106991.1 ENSMUSG00000106991 ENSMUST00000202546 Gm43399 TEC Interval_12582 chr10 3555136 3555392 + 0 NA TTS (ENSMUSG00000019762.4) protein_coding-TTS (ENSMUSG00000019762.4) 14976 ENSMUSG00000019762.4 ENSMUSG00000019762 ENSMUST00000141745 Iyd protein_coding Interval_86491 chr19 41071471 41072668 + 0 NA intron (ENSMUSG00000050121.9, intron 2 of 5) protein_coding-intron (ENSMUSG00000050121.9, intron 2 of 5) -3946 ENSMUSG00000050121.9 ENSMUSG00000050121 ENSMUST00000087176 Opalin protein_coding Interval_143934 chr7 18187506 18188598 + 0 NA Intergenic Intergenic -1100 ENSMUSG00000108545.1 ENSMUSG00000108545 ENSMUST00000205962 Gm44613 antisense Interval_130556 chr5 128783264 128784220 + 0 NA intron (ENSMUSG00000029420.14, intron 13 of 20) protein_coding-intron (ENSMUSG00000029420.14, intron 15 of 21) -8192 ENSMUSG00000106522.1 ENSMUSG00000106522 ENSMUST00000199333 Gm42871 sense_intronic Interval_66603 chr16 35578415 35578676 + 0 NA intron (ENSMUSG00000052133.16, intron 1 of 5) protein_coding-intron (ENSMUSG00000052133.16, intron 1 of 21) -4989 ENSMUSG00000052192.5 ENSMUSG00000052192 ENSMUST00000143451 Gm5963 processed_pseudogene Interval_90583 chr2 31258862 31259901 + 0 NA intron (ENSMUSG00000062661.6, intron 1 of 5) protein_coding-intron (ENSMUSG00000062661.6, intron 1 of 7) 13215 ENSMUSG00000062661.6 ENSMUSG00000062661 ENSMUST00000150670 Ncs1 protein_coding Interval_69910 chr17 3137419 3137883 + 0 NA intron (ENSMUSG00000046201.9, intron 2 of 4) protein_coding-intron (ENSMUSG00000046201.9, intron 1 of 19) -7139 ENSMUSG00000116941.1 ENSMUSG00000116941 ENSMUST00000232579 Gm46578 processed_pseudogene Interval_2584 chr1 40865026 40865330 + 0 NA promoter-TSS (ENSMUSG00000094136.2) processed_pseudogene-promoter-TSS (ENSMUSG00000094136.2) -946 ENSMUSG00000094136.2 ENSMUSG00000094136 ENSMUST00000178542 Gm5973 processed_pseudogene Interval_155462 chr8 33738908 33740115 + 0 NA intron (ENSMUSG00000031585.13, intron 2 of 4) protein_coding-intron (ENSMUSG00000031585.13, intron 2 of 7) 7200 ENSMUSG00000031585.13 ENSMUSG00000031585 ENSMUST00000186200 Gtf2e2 protein_coding Interval_36928 chr12 55419746 55420910 + 0 NA Intergenic Intergenic -24099 ENSMUSG00000059033.7 ENSMUSG00000059033 ENSMUST00000161190 Rpl18a-ps1 processed_pseudogene Interval_150281 chr7 109241290 109242210 + 0 NA Intergenic Intergenic -17550 ENSMUSG00000109001.1 ENSMUSG00000109001 ENSMUST00000208274 Gm45024 lincRNA Interval_113649 chr4 57254808 57255258 + 0 NA intron (ENSMUSG00000038764.14, intron 6 of 9) protein_coding-intron (ENSMUSG00000038764.14, intron 6 of 25) -45063 ENSMUSG00000085654.1 ENSMUSG00000085654 ENSMUST00000129102 Gm12536 lincRNA Interval_146813 chr7 52117233 52118437 + 0 NA Intergenic Intergenic -42256 ENSMUSG00000088722.1 ENSMUSG00000088722 ENSMUST00000158097 Gm22211 snRNA Interval_14346 chr10 31211981 31212626 + 0 NA Intergenic Intergenic 3030 ENSMUSG00000111396.1 ENSMUSG00000111396 ENSMUST00000213449 Gm7333 processed_pseudogene Interval_147904 chr7 75379791 75380032 + 0 NA Intergenic Intergenic 13856 ENSMUSG00000069196.6 ENSMUSG00000069196 ENSMUST00000091506 Gm10161 processed_pseudogene Interval_30170 chr11 90105963 90106671 + 0 NA Intergenic Intergenic 37307 ENSMUSG00000085074.1 ENSMUSG00000085074 ENSMUST00000142279 Gm11494 lincRNA Interval_38075 chr12 75507118 75507779 + 0 NA exon (ENSMUSG00000112254.1, exon 1 of 1) TEC-exon (ENSMUSG00000112254.1, exon 1 of 1) 1297 ENSMUSG00000112254.1 ENSMUSG00000112254 ENSMUST00000218033 Gm47690 TEC Interval_15371 chr10 45150955 45151544 + 0 NA intron (ENSMUSG00000019849.11, intron 12 of 14) protein_coding-intron (ENSMUSG00000019849.11, intron 12 of 14) -26849 ENSMUSG00000019848.14 ENSMUSG00000019848 ENSMUST00000161803 Popdc3 protein_coding Interval_100008 chr2 166466931 166467171 + 0 NA Intergenic Intergenic 19600 ENSMUSG00000085129.1 ENSMUSG00000085129 ENSMUST00000127920 5031425F14Rik lincRNA Interval_16683 chr10 67016348 67017533 + 0 NA intron (ENSMUSG00000019873.8, intron 6 of 8) protein_coding-intron (ENSMUSG00000019873.8, intron 6 of 7) 11865 ENSMUSG00000112925.1 ENSMUSG00000112925 ENSMUST00000218205 Gm31763 antisense Interval_128879 chr5 115835415 115836215 + 0 NA Intergenic Intergenic -33656 ENSMUSG00000083833.4 ENSMUSG00000083833 ENSMUST00000118829 Gm13841 processed_pseudogene Interval_46609 chr13 67558725 67559269 + 0 NA intron (ENSMUSG00000097360.8, intron 2 of 3) antisense-intron (ENSMUSG00000097360.8, intron 2 of 3) -5167 ENSMUSG00000095432.9 ENSMUSG00000095432 ENSMUST00000053289 Zfp748 protein_coding Interval_156224 chr8 46232790 46232991 + 0 NA Intergenic Intergenic 3096 ENSMUSG00000092897.1 ENSMUSG00000092897 ENSMUST00000175156 Gm23812 miRNA Interval_8042 chr1 135390700 135390893 + 0 NA intron (ENSMUSG00000041879.13, intron 17 of 24) protein_coding-intron (ENSMUSG00000041879.13, intron 16 of 23) -2096 ENSMUSG00000041879.13 ENSMUSG00000041879 ENSMUST00000159173 Ipo9 protein_coding Interval_25025 chr11 43348469 43350192 + 0 NA Intergenic Intergenic 25131 ENSMUSG00000065601.1 ENSMUSG00000065601 ENSMUST00000083667 Mir146 miRNA Interval_21628 chr11 3331800 3332851 + 0 NA promoter-TSS (ENSMUSG00000034614.14) protein_coding-promoter-TSS (ENSMUSG00000034614.14) -1147 ENSMUSG00000053263.3 ENSMUSG00000053263 ENSMUST00000155332 Gm12592 processed_transcript Interval_21088 chr10 126065241 126065541 + 0 NA Intergenic Intergenic 28564 ENSMUSG00000093161.1 ENSMUSG00000093161 ENSMUST00000175420 Gm22183 miRNA Interval_116618 chr4 116095817 116096862 + 0 NA TTS (ENSMUSG00000028702.15) protein_coding-TTS (ENSMUSG00000028702.15) 20876 ENSMUSG00000028703.14 ENSMUSG00000028703 ENSMUST00000134983 Lrrc41 protein_coding Interval_24770 chr11 37093403 37093627 + 0 NA intron (ENSMUSG00000049336.16, intron 2 of 3) protein_coding-intron (ENSMUSG00000049336.16, intron 2 of 30) -149349 ENSMUSG00000049336.16 ENSMUSG00000049336 ENSMUST00000157030 Tenm2 protein_coding Interval_156401 chr8 47932060 47932836 + 0 NA intron (ENSMUSG00000031563.8, intron 1 of 22) protein_coding-intron (ENSMUSG00000031563.8, intron 1 of 22) 33266 ENSMUSG00000064519.1 ENSMUSG00000064519 ENSMUST00000082585 n-R5s97 rRNA Interval_173231 chrX 74622270 74622473 + 0 NA Intergenic Intergenic -2055 ENSMUSG00000077462.1 ENSMUSG00000077462 ENSMUST00000104274 Gm26417 snoRNA Interval_105152 chr3 82856308 82856520 + 0 NA intron (ENSMUSG00000033882.15, intron 3 of 4) protein_coding-intron (ENSMUSG00000033882.15, intron 4 of 4) 10233 ENSMUSG00000033882.15 ENSMUSG00000033882 ENSMUST00000182818 Rbm46 protein_coding Interval_107290 chr3 105479978 105480292 + 0 NA intron (ENSMUSG00000040896.16, intron 2 of 4) protein_coding-intron (ENSMUSG00000040896.16, intron 1 of 6) -22772 ENSMUSG00000105753.1 ENSMUSG00000105753 ENSMUST00000200070 Gm43847 sense_intronic Interval_142682 chr6 144991804 144993510 + 0 NA Intergenic Intergenic 45531 ENSMUSG00000088867.1 ENSMUSG00000088867 ENSMUST00000158242 Gm23071 rRNA Interval_21588 chr10 130340731 130340928 + 0 NA intron (ENSMUSG00000034833.10, intron 3 of 3) protein_coding-intron (ENSMUSG00000034833.10, intron 1 of 8) 12085 ENSMUSG00000034833.10 ENSMUSG00000034833 ENSMUST00000220164 Tespa1 protein_coding Interval_27641 chr11 69235140 69237325 + 0 NA exon (ENSMUSG00000020890.11, exon 2 of 19) protein_coding-exon (ENSMUSG00000020890.11, exon 2 of 19) 790 ENSMUSG00000020890.11 ENSMUSG00000020890 ENSMUST00000155457 Gucy2e protein_coding Interval_159388 chr8 94245227 94245476 + 0 NA intron (ENSMUSG00000032939.14, intron 4 of 22) protein_coding-intron (ENSMUSG00000032939.14, intron 3 of 21) 22358 ENSMUSG00000110679.1 ENSMUSG00000110679 ENSMUST00000212707 Rpl10-ps5 processed_pseudogene Interval_67013 chr16 40113259 40113476 + 0 NA intron (ENSMUSG00000061080.11, intron 1 of 1) protein_coding-intron (ENSMUSG00000061080.11, intron 1 of 8) -14101 ENSMUSG00000102456.1 ENSMUSG00000102456 ENSMUST00000193417 Gm37508 TEC Interval_121933 chr5 10210809 10211281 + 0 NA intron (ENSMUSG00000073226.9, intron 1 of 2) lincRNA-intron (ENSMUSG00000073226.9, intron 1 of 2) 23179 ENSMUSG00000073226.9 ENSMUSG00000073226 ENSMUST00000101606 Gm10482 lincRNA Interval_36300 chr12 40907939 40908492 + 0 NA Intergenic Intergenic -9073 ENSMUSG00000114166.1 ENSMUSG00000114166 ENSMUST00000221023 Gm18246 processed_pseudogene Interval_47892 chr13 94211039 94211737 + 0 NA intron (ENSMUSG00000021687.14, intron 5 of 7) protein_coding-intron (ENSMUSG00000021687.14, intron 6 of 8) 35170 ENSMUSG00000021687.14 ENSMUSG00000021687 ENSMUST00000138255 Scamp1 protein_coding Interval_131934 chr5 140879974 140880828 + 0 NA exon (ENSMUSG00000036526.8, exon 21 of 25) protein_coding-exon (ENSMUSG00000036526.8, exon 21 of 25) -50244 ENSMUSG00000000149.10 ENSMUSG00000000149 ENSMUST00000198447 Gna12 protein_coding Interval_56114 chr14 105893305 105893572 + 0 NA exon (ENSMUSG00000022114.5, exon 2 of 2) protein_coding-exon (ENSMUSG00000022114.5, exon 2 of 2) 3381 ENSMUSG00000022114.5 ENSMUSG00000022114 ENSMUST00000022709 Spry2 protein_coding Interval_33216 chr11 115276645 115277808 + 0 NA promoter-TSS (ENSMUSG00000018861.8) protein_coding-promoter-TSS (ENSMUSG00000018861.8) -312 ENSMUSG00000018861.8 ENSMUSG00000018861 ENSMUST00000139437 Fdxr protein_coding Interval_23701 chr11 24742548 24744527 + 0 NA Intergenic Intergenic -12815 ENSMUSG00000073103.2 ENSMUSG00000073103 ENSMUST00000101450 Gm10466 lincRNA Interval_66939 chr16 38636263 38637443 + 0 NA TTS (ENSMUSG00000022799.4) protein_coding-TTS (ENSMUSG00000022799.4) 49016 ENSMUSG00000081651.1 ENSMUSG00000081651 ENSMUST00000122206 Gm15530 processed_pseudogene Interval_39386 chr12 87051185 87051936 + 0 NA intron (ENSMUSG00000034145.14, intron 1 of 23) protein_coding-intron (ENSMUSG00000034145.14, intron 2 of 24) -15917 ENSMUSG00000080868.1 ENSMUSG00000080868 ENSMUST00000119807 Gm15745 processed_pseudogene Interval_24171 chr11 30894960 30895167 + 0 NA intron (ENSMUSG00000020305.13, intron 1 of 9) protein_coding-intron (ENSMUSG00000020305.13, intron 1 of 9) 9647 ENSMUSG00000020305.13 ENSMUSG00000020305 ENSMUST00000148808 Asb3 protein_coding Interval_80425 chr18 42090207 42092083 + 0 NA intron (ENSMUSG00000057719.11, intron 1 of 7) protein_coding-intron (ENSMUSG00000057719.11, intron 1 of 8) -51888 ENSMUSG00000057719.11 ENSMUSG00000057719 ENSMUST00000236947 Sh3rf2 protein_coding Interval_169051 chr9 91216702 91217822 + 0 NA TTS (ENSMUSG00000100568.1) processed_pseudogene-TTS (ENSMUSG00000100568.1) 1247 ENSMUSG00000100568.1 ENSMUSG00000100568 ENSMUST00000186887 Gm29602 processed_pseudogene Interval_74739 chr17 56255581 56257544 + 0 NA promoter-TSS (ENSMUSG00000043683.4) protein_coding-promoter-TSS (ENSMUSG00000043683.4) -248 ENSMUSG00000043683.4 ENSMUSG00000043683 ENSMUST00000060253 Fem1a protein_coding Interval_13867 chr10 24080370 24080711 + 0 NA Intergenic Intergenic 4040 ENSMUSG00000096442.1 ENSMUSG00000096442 ENSMUST00000051133 Taar8a protein_coding Interval_84455 chr19 11091496 11092490 + 0 NA promoter-TSS (ENSMUSG00000101439.1) processed_pseudogene-promoter-TSS (ENSMUSG00000101439.1) 84 ENSMUSG00000101439.1 ENSMUSG00000101439 ENSMUST00000186376 Gm336 processed_pseudogene Interval_37804 chr12 72084625 72086594 + 0 NA promoter-TSS (ENSMUSG00000019718.8) protein_coding-promoter-TSS (ENSMUSG00000019718.8) -591 ENSMUSG00000019718.8 ENSMUSG00000019718 ENSMUST00000138029 L3hypdh protein_coding Interval_17122 chr10 71455584 71456374 + 0 NA Intergenic Intergenic -27102 ENSMUSG00000112608.1 ENSMUSG00000112608 ENSMUST00000217831 Gm46233 processed_pseudogene Interval_149555 chr7 99545882 99546328 + 0 NA intron (ENSMUSG00000018909.15, intron 1 of 4) protein_coding-intron (ENSMUSG00000018909.15, intron 1 of 14) -6164 ENSMUSG00000065571.1 ENSMUSG00000065571 ENSMUST00000083637 Mir326 miRNA Interval_124050 chr5 37829000 37830252 + 0 NA Intergenic Intergenic -5044 ENSMUSG00000048450.10 ENSMUSG00000048450 ENSMUST00000183013 Msx1 protein_coding Interval_141969 chr6 136172064 136173963 + 0 NA promoter-TSS (ENSMUSG00000097496.1) antisense-promoter-TSS (ENSMUSG00000097496.1) -48 ENSMUSG00000097496.1 ENSMUSG00000097496 ENSMUST00000181537 Gm26653 antisense Interval_49150 chr13 108611805 108612383 + 0 NA intron (ENSMUSG00000021699.17, intron 2 of 4) protein_coding-intron (ENSMUSG00000021699.17, intron 1 of 3) -58509 ENSMUSG00000059751.7 ENSMUSG00000059751 ENSMUST00000074680 Rps3a3 processed_pseudogene Interval_100416 chr2 168904120 168906188 + 0 NA intron (ENSMUSG00000027551.15, intron 7 of 8) protein_coding-intron (ENSMUSG00000027551.15, intron 7 of 8) -22986 ENSMUSG00000077761.1 ENSMUSG00000077761 ENSMUST00000104573 Gm25214 snoRNA Interval_121117 chr4 153222447 153223418 + 0 NA Intergenic Intergenic 4756 ENSMUSG00000087454.1 ENSMUSG00000087454 ENSMUST00000126141 Gm13174 lincRNA Interval_80042 chr18 36898079 36898474 + 0 NA Intergenic Intergenic -22120 ENSMUSG00000063514.3 ENSMUSG00000063514 ENSMUST00000180647 Gm6756 processed_pseudogene Interval_166652 chr9 61624215 61624543 + 0 NA Intergenic Intergenic 114656 ENSMUSG00000111381.1 ENSMUSG00000111381 ENSMUST00000213400 Gm34424 transcribed_processed_pseudogene Interval_95608 chr2 112764864 112766044 + 0 NA intron (ENSMUSG00000057378.15, intron 49 of 103) protein_coding-intron (ENSMUSG00000057378.15, intron 49 of 102) -108906 ENSMUSG00000057378.15 ENSMUSG00000057378 ENSMUST00000208135 Ryr3 protein_coding Interval_65415 chr16 22216047 22217356 + 0 NA Intergenic Intergenic -7543 ENSMUSG00000064686.1 ENSMUSG00000064686 ENSMUST00000082752 Gm25810 snRNA Interval_134379 chr6 27626369 27626730 + 0 NA intron (ENSMUSG00000024211.15, intron 5 of 9) protein_coding-intron (ENSMUSG00000024211.15, intron 5 of 9) -41538 ENSMUSG00000088391.1 ENSMUSG00000088391 ENSMUST00000157766 Gm26310 snoRNA Interval_38682 chr12 81007163 81007500 + 0 NA Intergenic Intergenic -19497 ENSMUSG00000021136.13 ENSMUSG00000021136 ENSMUST00000129362 Smoc1 protein_coding Interval_155923 chr8 41056767 41057876 + 0 NA intron (ENSMUSG00000045636.16, intron 2 of 3) protein_coding-intron (ENSMUSG00000045636.16, intron 3 of 13) 4211 ENSMUSG00000085672.1 ENSMUSG00000085672 ENSMUST00000125903 Gm16193 antisense Interval_65119 chr16 19874816 19875325 + 0 NA Intergenic Intergenic -8434 ENSMUSG00000116712.1 ENSMUSG00000116712 ENSMUST00000232011 Gm49598 lincRNA Interval_86659 chr19 42356834 42359251 + 0 NA intron (ENSMUSG00000042401.8, intron 2 of 14) protein_coding-intron (ENSMUSG00000042401.8, intron 2 of 14) 21059 ENSMUSG00000117706.1 ENSMUSG00000117706 ENSMUST00000237236 Gm50184 processed_pseudogene Interval_152229 chr7 130773051 130774518 + 0 NA promoter-TSS (ENSMUSG00000040298.6) protein_coding-promoter-TSS (ENSMUSG00000040298.6) -383 ENSMUSG00000040298.6 ENSMUSG00000040298 ENSMUST00000208593 Btbd16 protein_coding Interval_51430 chr14 27444301 27444686 + 0 NA TTS (ENSMUSG00000040651.9) protein_coding-TTS (ENSMUSG00000040651.9) -32677 ENSMUSG00000040651.9 ENSMUSG00000040651 ENSMUST00000225139 Tasor protein_coding Interval_144250 chr7 23956114 23956343 + 0 NA TTS (ENSMUSG00000092473.4) protein_coding-TTS (ENSMUSG00000092473.4) 5596 ENSMUSG00000092473.4 ENSMUSG00000092473 ENSMUST00000173816 Vmn1r180 protein_coding Interval_53154 chr14 54757039 54757383 + 0 NA intron (ENSMUSG00000022180.7, intron 3 of 3) protein_coding-intron (ENSMUSG00000022180.7, intron 3 of 10) 24735 ENSMUSG00000022180.7 ENSMUSG00000022180 ENSMUST00000226646 Slc7a8 protein_coding Interval_136572 chr6 55803860 55804571 + 0 NA Intergenic Intergenic -82610 ENSMUSG00000037973.6 ENSMUSG00000037973 ENSMUST00000169699 Itprid1 protein_coding Interval_165864 chr9 53935927 53936406 + 0 NA intron (ENSMUSG00000041986.16, intron 2 of 8) protein_coding-intron (ENSMUSG00000041986.16, intron 2 of 10) -9140 ENSMUSG00000041986.16 ENSMUSG00000041986 ENSMUST00000213111 Elmod1 protein_coding Interval_152556 chr7 134403437 134404140 + 0 NA intron (ENSMUSG00000030994.16, intron 2 of 3) protein_coding-intron (ENSMUSG00000030994.16, intron 2 of 3) 95196 ENSMUSG00000030994.16 ENSMUSG00000030994 ENSMUST00000205334 D7Ertd443e protein_coding Interval_112237 chr4 37444992 37445534 + 0 NA Intergenic Intergenic 147358 ENSMUSG00000088718.1 ENSMUSG00000088718 ENSMUST00000158093 Gm22732 snoRNA Interval_128688 chr5 114720396 114720631 + 0 NA TTS (ENSMUSG00000002486.15) protein_coding-TTS (ENSMUSG00000002486.15) 829 ENSMUSG00000002486.15 ENSMUSG00000002486 ENSMUST00000202252 Tchp protein_coding Interval_148889 chr7 89857064 89857510 + 0 NA Intergenic Intergenic 30069 ENSMUSG00000109150.1 ENSMUSG00000109150 ENSMUST00000207900 Gm45793 TEC Interval_14126 chr10 27889455 27889733 + 0 NA Intergenic Intergenic 19503 ENSMUSG00000112620.1 ENSMUSG00000112620 ENSMUST00000218873 Gm18972 processed_pseudogene Interval_106374 chr3 95719799 95720199 + 0 NA Intergenic Intergenic 14974 ENSMUSG00000098737.1 ENSMUSG00000098737 ENSMUST00000183853 Mir7014 miRNA Interval_63200 chr15 99704128 99705837 + 0 NA intron (ENSMUSG00000023018.5, intron 4 of 4) protein_coding-intron (ENSMUSG00000023018.5, intron 5 of 12) 508 ENSMUSG00000091604.2 ENSMUSG00000091604 ENSMUST00000163472 Gm17349 protein_coding Interval_17911 chr10 80774560 80775204 + 0 NA intron (ENSMUSG00000061589.14, intron 5 of 23) protein_coding-intron (ENSMUSG00000061589.14, intron 7 of 27) -5895 ENSMUSG00000075558.3 ENSMUSG00000075558 ENSMUST00000105760 Gm17151 antisense Interval_37661 chr12 70907338 70908675 + 0 NA Intergenic Intergenic 4145 ENSMUSG00000113584.1 ENSMUSG00000113584 ENSMUST00000221434 Gm46355 lincRNA Interval_56684 chr14 121361566 121361915 + 0 NA intron (ENSMUSG00000063410.8, intron 1 of 1) protein_coding-intron (ENSMUSG00000063410.8, intron 1 of 10) 18271 ENSMUSG00000063410.8 ENSMUSG00000063410 ENSMUST00000226158 Stk24 protein_coding Interval_173176 chrX 73816292 73817331 + 0 NA intron (ENSMUSG00000002006.12, intron 1 of 7) protein_coding-intron (ENSMUSG00000002006.12, intron 1 of 7) 7394 ENSMUSG00000064536.1 ENSMUSG00000064536 ENSMUST00000082602 Gm23615 snoRNA Interval_63612 chr15 102346596 102346816 + 0 NA exon (ENSMUSG00000036678.8, exon 4 of 16) protein_coding-exon (ENSMUSG00000036678.8, exon 4 of 16) -4121 ENSMUSG00000116402.1 ENSMUSG00000116402 ENSMUST00000229977 Gm36246 bidirectional_promoter_lncRNA Interval_48472 chr13 99294117 99294369 + 0 NA Intergenic Intergenic 50462 ENSMUSG00000021650.7 ENSMUSG00000021650 ENSMUST00000022153 Ptcd2 protein_coding Interval_8505 chr1 140325227 140325635 + 0 NA intron (ENSMUSG00000052726.16, intron 1 of 27) protein_coding-intron (ENSMUSG00000052726.16, intron 1 of 26) 58944 ENSMUSG00000102698.1 ENSMUSG00000102698 ENSMUST00000195546 Gm37777 TEC Interval_95797 chr2 116562405 116562658 + 0 NA Intergenic Intergenic -34041 ENSMUSG00000081787.1 ENSMUSG00000081787 ENSMUST00000120190 Gm13991 processed_pseudogene Interval_29583 chr11 85169838 85171336 + 0 NA promoter-TSS (ENSMUSG00000018479.12) protein_coding-promoter-TSS (ENSMUSG00000018479.12) 183 ENSMUSG00000018479.12 ENSMUSG00000018479 ENSMUST00000018623 1700125H20Rik protein_coding Interval_64987 chr16 17705742 17706021 + 0 NA TTS (ENSMUSG00000116994.1) processed_pseudogene-TTS (ENSMUSG00000116994.1) 1538 ENSMUSG00000116994.1 ENSMUSG00000116994 ENSMUST00000232374 Gm49684 processed_pseudogene Interval_79137 chr18 24905704 24906360 + 0 NA intron (ENSMUSG00000034295.10, intron 5 of 24) protein_coding-intron (ENSMUSG00000034295.10, intron 5 of 26) 144869 ENSMUSG00000088920.1 ENSMUSG00000088920 ENSMUST00000158295 Gm24294 misc_RNA Interval_110935 chr4 10508399 10509067 + 0 NA intron (ENSMUSG00000086080.7, intron 4 of 4) lincRNA-intron (ENSMUSG00000086080.7, intron 2 of 3) -19371 ENSMUSG00000086455.1 ENSMUSG00000086455 ENSMUST00000139423 Gm11815 lincRNA Interval_108411 chr3 126775831 126776391 + 0 NA intron (ENSMUSG00000053819.16, intron 6 of 20) protein_coding-intron (ENSMUSG00000053819.16, intron 6 of 18) 29978 ENSMUSG00000105553.1 ENSMUSG00000105553 ENSMUST00000196636 Gm42514 TEC Interval_89810 chr2 25591691 25592561 + 0 NA intron (ENSMUSG00000015087.14, intron 7 of 13) protein_coding-intron (ENSMUSG00000015087.14, intron 7 of 14) -1754 ENSMUSG00000015087.14 ENSMUSG00000015087 ENSMUST00000140785 Rabl6 protein_coding Interval_37196 chr12 59470979 59471250 + 0 NA Intergenic Intergenic -115505 ENSMUSG00000111978.1 ENSMUSG00000111978 ENSMUST00000219779 Gm48268 processed_pseudogene Interval_11853 chr1 186312319 186312973 + 0 NA Intergenic Intergenic -34669 ENSMUSG00000102217.1 ENSMUSG00000102217 ENSMUST00000192552 Gm37491 TEC Interval_98016 chr2 146745688 146747123 + 0 NA Intergenic Intergenic 9300 ENSMUSG00000080870.1 ENSMUSG00000080870 ENSMUST00000119851 Gm14111 processed_pseudogene Interval_131300 chr5 136255022 136255473 + 0 NA intron (ENSMUSG00000029705.17, intron 17 of 22) protein_coding-intron (ENSMUSG00000029705.17, intron 16 of 20) -19749 ENSMUSG00000086220.1 ENSMUSG00000086220 ENSMUST00000148082 Gm16599 antisense Interval_109605 chr3 145079424 145079594 + 0 NA intron (ENSMUSG00000036960.10, intron 10 of 12) protein_coding-intron (ENSMUSG00000036960.10, intron 10 of 13) 19597 ENSMUSG00000036960.10 ENSMUSG00000036960 ENSMUST00000197121 Clca2 protein_coding Interval_143974 chr7 18710079 18711140 + 0 NA Intergenic Intergenic -2981 ENSMUSG00000108882.1 ENSMUSG00000108882 ENSMUST00000207958 Gm44563 unprocessed_pseudogene Interval_117930 chr4 127153093 127154131 + 0 NA Intergenic Intergenic -12124 ENSMUSG00000082220.3 ENSMUSG00000082220 ENSMUST00000119616 Gm12943 processed_pseudogene Interval_65570 chr16 23416107 23417792 + 0 NA Intergenic Intergenic 6786 ENSMUSG00000084439.1 ENSMUSG00000084439 ENSMUST00000122490 Gm23430 misc_RNA Interval_53863 chr14 62882099 62882523 + 0 NA intron (ENSMUSG00000014547.10, intron 1 of 3) protein_coding-intron (ENSMUSG00000014547.10, intron 1 of 11) 12597 ENSMUSG00000084465.1 ENSMUSG00000084465 ENSMUST00000122516 n-R5s47 rRNA Interval_33572 chr11 117289877 117291252 + 0 NA exon (ENSMUSG00000059248.13, exon 2 of 11) protein_coding-exon (ENSMUSG00000059248.13, exon 2 of 11) -27127 ENSMUSG00000086050.1 ENSMUSG00000086050 ENSMUST00000123882 Gm16045 antisense Interval_15577 chr10 51744136 51744636 + 0 NA Intergenic Intergenic 12808 ENSMUSG00000062224.6 ENSMUSG00000062224 ENSMUST00000219766 4933411G06Rik lincRNA Interval_69555 chr16 94207301 94207739 + 0 NA intron (ENSMUSG00000040820.16, intron 2 of 6) protein_coding-intron (ENSMUSG00000040820.16, intron 5 of 9) 15492 ENSMUSG00000115044.1 ENSMUSG00000115044 ENSMUST00000227277 Gm48978 TEC Interval_54083 chr14 65092221 65092438 + 0 NA intron (ENSMUSG00000021978.9, intron 1 of 6) protein_coding-intron (ENSMUSG00000021978.9, intron 1 of 6) 5776 ENSMUSG00000021978.9 ENSMUSG00000021978 ENSMUST00000223989 Extl3 protein_coding Interval_71603 chr17 24797322 24798602 + 0 NA Intergenic Intergenic -6397 ENSMUSG00000024155.8 ENSMUSG00000024155 ENSMUST00000234455 Meiob protein_coding Interval_77746 chr17 94858185 94859120 + 0 NA promoter-TSS (ENSMUSG00000117582.1) processed_pseudogene-promoter-TSS (ENSMUSG00000117582.1) -34 ENSMUSG00000117582.1 ENSMUSG00000117582 ENSMUST00000234178 Gm19853 processed_pseudogene Interval_67738 chr16 56710840 56711026 + 0 NA intron (ENSMUSG00000022757.19, intron 2 of 2) protein_coding-intron (ENSMUSG00000022757.19, intron 2 of 7) 6249 ENSMUSG00000022757.19 ENSMUSG00000022757 ENSMUST00000141404 Tfg protein_coding Interval_103675 chr3 51533708 51534735 + 0 NA intron (ENSMUSG00000037111.9, intron 1 of 2) protein_coding-intron (ENSMUSG00000037111.9, intron 4 of 7) 2426 ENSMUSG00000037111.9 ENSMUSG00000037111 ENSMUST00000194828 Setd7 protein_coding Interval_169708 chr9 100539999 100540641 + 0 NA intron (ENSMUSG00000032475.15, intron 1 of 2) protein_coding-intron (ENSMUSG00000032475.15, intron 1 of 3) 5411 ENSMUSG00000032475.15 ENSMUSG00000032475 ENSMUST00000188670 Nck1 protein_coding Interval_39998 chr12 100371914 100372364 + 0 NA intron (ENSMUSG00000033530.8, intron 15 of 20) protein_coding-intron (ENSMUSG00000033530.8, intron 15 of 19) -2387 ENSMUSG00000113917.1 ENSMUSG00000113917 ENSMUST00000220812 Gm48382 TEC Interval_114836 chr4 86062983 86063611 + 0 NA intron (ENSMUSG00000066113.16, intron 1 of 8) protein_coding-intron (ENSMUSG00000066113.16, intron 1 of 12) -19803 ENSMUSG00000064687.1 ENSMUSG00000064687 ENSMUST00000082753 Gm25811 snRNA Interval_82019 chr18 67234940 67235295 + 0 NA intron (ENSMUSG00000062526.4, intron 3 of 4) protein_coding-intron (ENSMUSG00000062526.4, intron 3 of 10) 10324 ENSMUSG00000062526.4 ENSMUSG00000062526 ENSMUST00000237631 Mppe1 protein_coding Interval_76654 chr17 83205258 83205496 + 0 NA Intergenic Intergenic -9915 ENSMUSG00000024247.14 ENSMUSG00000024247 ENSMUST00000168118 Pkdcc protein_coding Interval_165598 chr9 50123941 50125001 + 0 NA Intergenic Intergenic 62574 ENSMUSG00000098012.1 ENSMUSG00000098012 ENSMUST00000182240 Gm8907 processed_pseudogene Interval_74319 chr17 48917285 48918226 + 0 NA Intergenic Intergenic -14624 ENSMUSG00000040490.4 ENSMUSG00000040490 ENSMUST00000046254 Lrfn2 protein_coding Interval_110391 chr3 157699331 157699768 + 0 NA Intergenic Intergenic 26859 ENSMUSG00000106632.1 ENSMUSG00000106632 ENSMUST00000199819 Gm33466 lincRNA Interval_162322 chr8 127088423 127088892 + 0 NA intron (ENSMUSG00000025812.18, intron 1 of 17) protein_coding-intron (ENSMUSG00000025812.18, intron 1 of 23) 41745 ENSMUSG00000088710.1 ENSMUSG00000088710 ENSMUST00000158085 Gm22730 snRNA Interval_110284 chr3 155771812 155772673 + 0 NA exon (ENSMUSG00000104329.1, exon 1 of 1) TEC-exon (ENSMUSG00000104329.1, exon 1 of 1) 3586 ENSMUSG00000104329.1 ENSMUSG00000104329 ENSMUST00000194500 Gm37324 TEC Interval_6035 chr1 94281464 94282056 + 0 NA Intergenic Intergenic 77343 ENSMUSG00000100990.1 ENSMUSG00000100990 ENSMUST00000190284 Gm7891 processed_pseudogene Interval_17664 chr10 78705811 78706213 + 0 NA Intergenic Intergenic 6403 ENSMUSG00000111946.1 ENSMUSG00000111946 ENSMUST00000219903 Gm47495 processed_pseudogene Interval_1918 chr1 34543883 34544399 + 0 NA exon (ENSMUSG00000026124.4, exon 6 of 6) protein_coding-exon (ENSMUSG00000026124.4, exon 6 of 6) -5581 ENSMUSG00000101803.1 ENSMUSG00000101803 ENSMUST00000189108 Gm28419 processed_pseudogene Interval_82202 chr18 69017640 69018068 + 0 NA Intergenic Intergenic 4419 ENSMUSG00000098366.1 ENSMUSG00000098366 ENSMUST00000184434 Mir145b miRNA Interval_60905 chr15 77757986 77758207 + 0 NA Intergenic Intergenic -1093 ENSMUSG00000056656.6 ENSMUSG00000056656 ENSMUST00000229332 Apol8 protein_coding Interval_146759 chr7 49985961 49986850 + 0 NA intron (ENSMUSG00000055409.14, intron 2 of 9) protein_coding-intron (ENSMUSG00000055409.14, intron 2 of 19) 76106 ENSMUSG00000039728.15 ENSMUSG00000039728 ENSMUST00000107605 Slc6a5 protein_coding Interval_32205 chr11 106147277 106147491 + 0 NA intron (ENSMUSG00000020700.11, intron 8 of 15) protein_coding-intron (ENSMUSG00000020700.11, intron 8 of 15) -3828 ENSMUSG00000020700.11 ENSMUSG00000020700 ENSMUST00000124449 Map3k3 protein_coding Interval_117068 chr4 119347493 119348181 + 0 NA TTS (ENSMUSG00000028637.16) protein_coding-TTS (ENSMUSG00000028637.16) -12392 ENSMUSG00000083836.1 ENSMUSG00000083836 ENSMUST00000118722 Ldha-ps2 processed_pseudogene Interval_65715 chr16 25870996 25872093 + 0 NA intron (ENSMUSG00000022510.14, intron 10 of 13) protein_coding-intron (ENSMUSG00000022510.14, intron 8 of 11) -84931 ENSMUSG00000090257.1 ENSMUSG00000090257 ENSMUST00000161614 Gm4524 antisense Interval_59963 chr15 62268049 62268331 + 0 NA intron (ENSMUSG00000097039.8, intron 5 of 9) lincRNA-intron (ENSMUSG00000097039.8, intron 5 of 9) -48858 ENSMUSG00000101167.1 ENSMUSG00000101167 ENSMUST00000151919 Macroh2a3 processed_pseudogene Interval_103247 chr3 37461397 37461622 + 0 NA intron (ENSMUSG00000027722.14, intron 13 of 16) protein_coding-intron (ENSMUSG00000027722.14, intron 13 of 15) -27318 ENSMUSG00000106166.1 ENSMUSG00000106166 ENSMUST00000198333 Gm43484 TEC Interval_5396 chr1 88474034 88475679 + 0 NA Intergenic Intergenic -12248 ENSMUSG00000099553.1 ENSMUSG00000099553 ENSMUST00000190783 Gm29538 lincRNA Interval_79974 chr18 36379673 36380371 + 0 NA intron (ENSMUSG00000046727.13, intron 4 of 4) protein_coding-intron (ENSMUSG00000046727.13, intron 2 of 2) 37442 ENSMUSG00000046727.13 ENSMUSG00000046727 ENSMUST00000144158 Cystm1 protein_coding Interval_143198 chr7 4431744 4432208 + 0 NA intron (ENSMUSG00000008435.15, intron 3 of 6) protein_coding-intron (ENSMUSG00000008435.15, intron 4 of 6) 10039 ENSMUSG00000077965.1 ENSMUSG00000077965 ENSMUST00000104772 Gm24605 miRNA Interval_133123 chr5 150022410 150022716 + 0 NA promoter-TSS (ENSMUSG00000107360.1) sense_intronic-promoter-TSS (ENSMUSG00000107360.1) 84 ENSMUSG00000107360.1 ENSMUSG00000107360 ENSMUST00000200982 Gm42558 sense_intronic Interval_66777 chr16 37533887 37534144 + 0 NA exon (ENSMUSG00000022828.10, exon 2 of 2) protein_coding-exon (ENSMUSG00000022828.10, exon 2 of 2) 5761 ENSMUSG00000022828.10 ENSMUSG00000022828 ENSMUST00000130350 Gtf2e1 protein_coding Interval_99670 chr2 164092873 164093273 + 0 NA intron (ENSMUSG00000018209.15, intron 4 of 4) protein_coding-intron (ENSMUSG00000018209.15, intron 5 of 10) 11476 ENSMUSG00000018209.15 ENSMUSG00000018209 ENSMUST00000088291 Stk4 protein_coding Interval_35145 chr12 17553870 17554702 + 0 NA intron (ENSMUSG00000113093.1, intron 1 of 4) processed_transcript-intron (ENSMUSG00000113093.1, intron 1 of 4) 8140 ENSMUSG00000064427.1 ENSMUSG00000064427 ENSMUST00000082493 Gm22748 snoRNA Interval_130369 chr5 126787082 126788329 + 0 NA Intergenic Intergenic 27777 ENSMUSG00000105316.1 ENSMUSG00000105316 ENSMUST00000199363 Gm42953 lincRNA Interval_158992 chr8 88520739 88522294 + 0 NA exon (ENSMUSG00000031661.12, exon 1 of 10) protein_coding-exon (ENSMUSG00000031661.12, exon 1 of 10) -38517 ENSMUSG00000110187.1 ENSMUSG00000110187 ENSMUST00000209918 Gm45496 TEC Interval_260 KZ289068.1 393745 395007 + 0 NA NA NA NA NA Interval_119433 chr4 137609328 137610142 + 0 NA intron (ENSMUSG00000043411.15, intron 6 of 26) protein_coding-intron (ENSMUSG00000043411.15, intron 6 of 27) -27631 ENSMUSG00000094035.3 ENSMUSG00000094035 ENSMUST00000238941 Ldlrad2 protein_coding Interval_99927 chr2 165954051 165955730 + 0 NA Intergenic Intergenic -4899 ENSMUSG00000082924.1 ENSMUSG00000082924 ENSMUST00000117749 Gm11462 processed_pseudogene Interval_24529 chr11 34063982 34064325 + 0 NA intron (ENSMUSG00000002699.13, intron 3 of 19) protein_coding-intron (ENSMUSG00000002699.13, intron 3 of 20) -22851 ENSMUSG00000002699.13 ENSMUSG00000002699 ENSMUST00000146318 Lcp2 protein_coding Interval_172366 chrX 13858632 13859652 + 0 NA Intergenic Intergenic 70369 ENSMUSG00000082736.1 ENSMUSG00000082736 ENSMUST00000117975 Gm5381 processed_pseudogene Interval_131382 chr5 136821963 136822849 + 0 NA intron (ENSMUSG00000004415.15, intron 3 of 3) protein_coding-intron (ENSMUSG00000004415.15, intron 3 of 12) 15903 ENSMUSG00000004415.15 ENSMUSG00000004415 ENSMUST00000140245 Col26a1 protein_coding Interval_29880 chr11 87487551 87487877 + 0 NA intron (ENSMUSG00000010342.16, intron 5 of 30) protein_coding-intron (ENSMUSG00000010342.16, intron 5 of 30) 16346 ENSMUSG00000105115.1 ENSMUSG00000105115 ENSMUST00000196353 Rnu3b2 snoRNA Interval_11602 chr1 183220861 183221850 + 0 NA exon (ENSMUSG00000030768.12, exon 1 of 10) protein_coding-exon (ENSMUSG00000030768.12, exon 1 of 10) 135 ENSMUSG00000030768.12 ENSMUSG00000030768 ENSMUST00000194033 Disp1 protein_coding Interval_23234 chr11 20740723 20741993 + 0 NA promoter-TSS (ENSMUSG00000049659.15) protein_coding-promoter-TSS (ENSMUSG00000049659.15) 97 ENSMUSG00000049659.15 ENSMUSG00000049659 ENSMUST00000134897 Aftph protein_coding Interval_72063 chr17 27797421 27797737 + 0 NA intron (ENSMUSG00000056692.13, intron 1 of 4) protein_coding-intron (ENSMUSG00000056692.13, intron 1 of 3) 13200 ENSMUSG00000080731.2 ENSMUSG00000080731 ENSMUST00000121414 Rps2-ps9 transcribed_processed_pseudogene Interval_84671 chr19 14884261 14885357 + 0 NA Intergenic Intergenic 75957 ENSMUSG00000063586.1 ENSMUSG00000063586 ENSMUST00000072982 Gm5513 processed_pseudogene Interval_52859 chr14 51165769 51166101 + 0 NA Intergenic Intergenic 2490 ENSMUSG00000115136.1 ENSMUSG00000115136 ENSMUST00000228894 Ear-ps1 unprocessed_pseudogene Interval_80639 chr18 44958898 44959484 + 0 NA Intergenic Intergenic -85671 ENSMUSG00000118013.1 ENSMUSG00000118013 ENSMUST00000238022 Gm31706 lincRNA Interval_151077 chr7 118359014 118359457 + 0 NA intron (ENSMUSG00000118412.1, intron 4 of 4) unitary_pseudogene-intron (ENSMUSG00000118412.1, intron 4 of 4) 10482 ENSMUSG00000118412.1 ENSMUSG00000118412 ENSMUST00000238497 Gm32766 unitary_pseudogene Interval_35510 chr12 24084984 24085284 + 0 NA intron (ENSMUSG00000073158.4, intron 1 of 3) protein_coding-intron (ENSMUSG00000073158.4, intron 1 of 3) 12112 ENSMUSG00000073158.4 ENSMUSG00000073158 ENSMUST00000101538 9030624G23Rik protein_coding Interval_38778 chr12 82263668 82265492 + 0 NA intron (ENSMUSG00000042700.16, intron 1 of 21) protein_coding-intron (ENSMUSG00000042700.16, intron 2 of 22) 95104 ENSMUSG00000042700.16 ENSMUSG00000042700 ENSMUST00000221327 Sipa1l1 protein_coding Interval_34682 chr12 8667139 8668506 + 0 NA Intergenic Intergenic -6312 ENSMUSG00000020594.14 ENSMUSG00000020594 ENSMUST00000171608 Pum2 protein_coding Interval_29352 chr11 83397003 83397378 + 0 NA intron (ENSMUSG00000035152.14, intron 19 of 20) protein_coding-intron (ENSMUSG00000035152.14, intron 20 of 21) -12498 ENSMUSG00000020684.14 ENSMUSG00000020684 ENSMUST00000164425 Rasl10b protein_coding Interval_149720 chr7 100924483 100925970 + 0 NA intron (ENSMUSG00000032875.8, intron 1 of 20) protein_coding-intron (ENSMUSG00000032875.8, intron 1 of 20) -25591 ENSMUSG00000109132.1 ENSMUSG00000109132 ENSMUST00000208262 Gm44545 TEC Interval_149630 chr7 100178196 100179190 + 0 NA promoter-TSS (ENSMUSG00000035165.14) protein_coding-promoter-TSS (ENSMUSG00000035165.14) 2191 ENSMUSG00000035165.14 ENSMUSG00000035165 ENSMUST00000208260 Kcne3 protein_coding Interval_12059 chr1 189243068 189243519 + 0 NA exon (ENSMUSG00000037624.15, exon 1 of 3) protein_coding-exon (ENSMUSG00000037624.15, exon 1 of 3) -32280 ENSMUSG00000103669.1 ENSMUSG00000103669 ENSMUST00000194444 2900042K21Rik sense_overlapping Interval_114587 chr4 82762063 82763921 + 0 NA Intergenic Intergenic -57242 ENSMUSG00000008575.17 ENSMUSG00000008575 ENSMUST00000152588 Nfib protein_coding Interval_50369 chr14 12130375 12130773 + 0 NA intron (ENSMUSG00000021745.14, intron 8 of 29) protein_coding-intron (ENSMUSG00000021745.14, intron 8 of 29) 22010 ENSMUSG00000114246.1 ENSMUSG00000114246 ENSMUST00000225204 Gm48603 TEC Interval_81642 chr18 62780811 62781148 + 0 NA Intergenic Intergenic -24664 ENSMUSG00000041789.7 ENSMUSG00000041789 ENSMUST00000048109 2700046A07Rik lincRNA Interval_8341 chr1 137489387 137490108 + 0 NA Intergenic Intergenic 41483 ENSMUSG00000103070.1 ENSMUSG00000103070 ENSMUST00000192122 Gm37903 TEC Interval_116582 chr4 115873016 115873618 + 0 NA exon (ENSMUSG00000028708.16, exon 9 of 9) protein_coding-exon (ENSMUSG00000028708.16, exon 9 of 9) 5259 ENSMUSG00000100081.1 ENSMUSG00000100081 ENSMUST00000187426 Gm29434 antisense Interval_82272 chr18 69846313 69846730 + 0 NA Intergenic Intergenic 64203 ENSMUSG00000118028.1 ENSMUSG00000118028 ENSMUST00000235804 Gm50215 lincRNA Interval_37578 chr12 70037264 70037485 + 0 NA intron (ENSMUSG00000021068.17, intron 21 of 30) protein_coding-intron (ENSMUSG00000021068.17, intron 21 of 29) -42482 ENSMUSG00000089153.1 ENSMUSG00000089153 ENSMUST00000158528 Gm23579 snRNA Interval_90722 chr2 32109657 32110332 + 0 NA exon (ENSMUSG00000051373.5, exon 2 of 2) protein_coding-exon (ENSMUSG00000051373.5, exon 2 of 2) 13839 ENSMUSG00000051373.5 ENSMUSG00000051373 ENSMUST00000146502 Plpp7 protein_coding Interval_157727 chr8 72547610 72548909 + 0 NA promoter-TSS (ENSMUSG00000045248.6) protein_coding-promoter-TSS (ENSMUSG00000045248.6) 11 ENSMUSG00000045248.6 ENSMUSG00000045248 ENSMUST00000058534 Med26 protein_coding Interval_96892 chr2 129252849 129253842 + 0 NA intron (ENSMUSG00000085485.1, intron 1 of 2) antisense-intron (ENSMUSG00000085485.1, intron 1 of 2) 6969 ENSMUSG00000085485.1 ENSMUSG00000085485 ENSMUST00000141964 Gm14024 antisense Interval_150000 chr7 104477851 104479093 + 0 NA intron (ENSMUSG00000057596.13, intron 2 of 3) protein_coding-intron (ENSMUSG00000057596.13, intron 5 of 7) 4954 ENSMUSG00000057596.13 ENSMUSG00000057596 ENSMUST00000141063 Trim30d protein_coding Interval_144372 chr7 24740620 24740883 + 0 NA Intergenic Intergenic 10070 ENSMUSG00000052212.6 ENSMUSG00000052212 ENSMUST00000206160 Cd177 protein_coding Interval_78534 chr18 14554783 14555646 + 0 NA Intergenic Intergenic -14933 ENSMUSG00000053740.8 ENSMUSG00000053740 ENSMUST00000066378 Gm6457 processed_pseudogene Interval_87278 chr19 47348560 47349361 + 0 NA intron (ENSMUSG00000053617.12, intron 5 of 13) protein_coding-intron (ENSMUSG00000053617.12, intron 5 of 14) 61399 ENSMUSG00000053617.12 ENSMUSG00000053617 ENSMUST00000237828 Sh3pxd2a protein_coding Interval_96158 chr2 120147580 120148400 + 0 NA intron (ENSMUSG00000027293.13, intron 1 of 3) protein_coding-intron (ENSMUSG00000027293.13, intron 1 of 5) -10430 ENSMUSG00000027293.13 ENSMUSG00000027293 ENSMUST00000148073 Ehd4 protein_coding Interval_113888 chr4 59602576 59603206 + 0 NA intron (ENSMUSG00000028383.17, intron 8 of 11) protein_coding-intron (ENSMUSG00000028383.17, intron 7 of 10) 8581 ENSMUSG00000028383.17 ENSMUSG00000028383 ENSMUST00000128792 Hsdl2 protein_coding Interval_41143 chr12 111459210 111460360 + 0 NA intron (ENSMUSG00000113029.1, intron 2 of 2) antisense-intron (ENSMUSG00000113029.1, intron 2 of 2) 13701 ENSMUSG00000021281.15 ENSMUSG00000021281 ENSMUST00000127028 Tnfaip2 protein_coding Interval_72545 chr17 30611966 30612786 + 0 NA intron (ENSMUSG00000024026.13, intron 1 of 2) protein_coding-intron (ENSMUSG00000024026.13, intron 1 of 6) 193 ENSMUSG00000024026.13 ENSMUSG00000024026 ENSMUST00000237063 Glo1 protein_coding Interval_77429 chr17 88635874 88637104 + 0 NA TTS (ENSMUSG00000033855.15) protein_coding-TTS (ENSMUSG00000033855.15) 9934 ENSMUSG00000033855.15 ENSMUSG00000033855 ENSMUST00000112216 Ston1 protein_coding Interval_60739 chr15 76450761 76451610 + 0 NA promoter-TSS (ENSMUSG00000022558.16) protein_coding-promoter-TSS (ENSMUSG00000022558.16) 4843 ENSMUSG00000022557.11 ENSMUSG00000022557 ENSMUST00000229132 Bop1 protein_coding Interval_126266 chr5 85313692 85313935 + 0 NA Intergenic Intergenic -406961 ENSMUSG00000104878.1 ENSMUSG00000104878 ENSMUST00000197581 Gm43567 lincRNA Interval_120743 chr4 150381630 150381838 + 0 NA intron (ENSMUSG00000039852.17, intron 1 of 22) protein_coding-intron (ENSMUSG00000039852.17, intron 1 of 22) 60541 ENSMUSG00000089292.1 ENSMUSG00000089292 ENSMUST00000158667 Gm23209 snRNA Interval_10176 chr1 166408953 166410145 + 0 NA promoter-TSS (ENSMUSG00000040596.15) protein_coding-promoter-TSS (ENSMUSG00000040596.15) 279 ENSMUSG00000040596.15 ENSMUSG00000040596 ENSMUST00000127596 Pogk protein_coding Interval_130509 chr5 128481869 128483651 + 0 NA Intergenic Intergenic 33856 ENSMUSG00000104727.1 ENSMUSG00000104727 ENSMUST00000199898 Gm42500 lincRNA Interval_96535 chr2 125469240 125469714 + 0 NA intron (ENSMUSG00000027204.13, intron 3 of 9) protein_coding-intron (ENSMUSG00000027204.13, intron 4 of 65) -35612 ENSMUSG00000053615.1 ENSMUSG00000053615 ENSMUST00000066157 Gm9913 antisense Interval_121901 chr5 9330345 9330907 + 0 NA intron (ENSMUSG00000056004.16, intron 1 of 19) protein_coding-intron (ENSMUSG00000056004.16, intron 1 of 21) -23133 ENSMUSG00000086115.1 ENSMUSG00000086115 ENSMUST00000132957 Gm15733 processed_pseudogene Interval_115472 chr4 99226931 99227741 + 0 NA intron (ENSMUSG00000028550.15, intron 7 of 10) protein_coding-intron (ENSMUSG00000028550.15, intron 7 of 10) 33189 ENSMUSG00000028550.15 ENSMUSG00000028550 ENSMUST00000152121 Atg4c protein_coding Interval_93039 chr2 69744798 69745459 + 0 NA intron (ENSMUSG00000042133.16, intron 2 of 4) protein_coding-intron (ENSMUSG00000042133.16, intron 11 of 13) -7339 ENSMUSG00000082345.1 ENSMUSG00000082345 ENSMUST00000120658 Gm13622 processed_pseudogene Interval_103668 chr3 51483475 51484867 + 0 NA exon (ENSMUSG00000027739.9, exon 1 of 2) protein_coding-exon (ENSMUSG00000027739.9, exon 1 of 2) 251 ENSMUSG00000027739.9 ENSMUSG00000027739 ENSMUST00000054387 Rab33b protein_coding Interval_4589 chr1 75293142 75293521 + 0 NA Intergenic Intergenic -19068 ENSMUSG00000033061.15 ENSMUSG00000033061 ENSMUST00000189203 Resp18 protein_coding Interval_159765 chr8 101783843 101784132 + 0 NA Intergenic Intergenic -244279 ENSMUSG00000087985.1 ENSMUSG00000087985 ENSMUST00000157360 Gm22223 snoRNA Interval_148711 chr7 84447124 84447787 + 0 NA Intergenic Intergenic -2904 ENSMUSG00000109347.1 ENSMUSG00000109347 ENSMUST00000208295 Gm45175 lincRNA Interval_154597 chr8 21970110 21970400 + 0 NA promoter-TSS (ENSMUSG00000017049.4) protein_coding-promoter-TSS (ENSMUSG00000017049.4) 480 ENSMUSG00000017049.4 ENSMUSG00000017049 ENSMUST00000017193 Ccdc70 protein_coding Interval_24667 chr11 35768973 35770291 + 0 NA exon (ENSMUSG00000018846.8, exon 1 of 7) protein_coding-exon (ENSMUSG00000018846.8, exon 1 of 7) 148 ENSMUSG00000018846.8 ENSMUSG00000018846 ENSMUST00000018990 Pank3 protein_coding Interval_90945 chr2 33637296 33637847 + 0 NA intron (ENSMUSG00000038765.14, intron 2 of 7) protein_coding-intron (ENSMUSG00000038765.14, intron 2 of 7) 2940 ENSMUSG00000038765.14 ENSMUSG00000038765 ENSMUST00000137559 Lmx1b protein_coding Interval_40652 chr12 106467608 106468765 + 0 NA Intergenic Intergenic 9036 ENSMUSG00000091762.1 ENSMUSG00000091762 ENSMUST00000167139 Gm3191 processed_pseudogene Interval_55028 chr14 77175140 77175474 + 0 NA intron (ENSMUSG00000022012.9, intron 1 of 2) protein_coding-intron (ENSMUSG00000022012.9, intron 1 of 18) 77007 ENSMUSG00000063556.5 ENSMUSG00000063556 ENSMUST00000099431 Gm10132 processed_pseudogene Interval_135528 chr6 40013380 40013799 + 0 NA intron (ENSMUSG00000057716.7, intron 2 of 3) protein_coding-intron (ENSMUSG00000057716.7, intron 2 of 3) -13305 ENSMUSG00000103331.1 ENSMUSG00000103331 ENSMUST00000194958 Gm37995 TEC Interval_147331 chr7 65895020 65895982 + 0 NA intron (ENSMUSG00000030513.14, intron 1 of 19) protein_coding-intron (ENSMUSG00000030513.14, intron 1 of 21) -33509 ENSMUSG00000093405.1 ENSMUSG00000093405 ENSMUST00000176744 Gm20684 bidirectional_promoter_lncRNA Interval_150733 chr7 113919013 113919933 + 0 NA intron (ENSMUSG00000038156.16, intron 5 of 5) protein_coding-intron (ENSMUSG00000038156.16, intron 5 of 15) 153299 ENSMUSG00000038156.16 ENSMUSG00000038156 ENSMUST00000084696 Spon1 protein_coding Interval_94232 chr2 85830765 85831210 + 0 NA Intergenic Intergenic 12508 ENSMUSG00000043892.3 ENSMUSG00000043892 ENSMUST00000054201 Olfr1018 protein_coding Interval_94104 chr2 84194409 84195609 + 0 NA Intergenic Intergenic 44954 ENSMUSG00000093115.1 ENSMUSG00000093115 ENSMUST00000175374 Gm25972 miRNA Interval_17296 chr10 75680731 75681133 + 0 NA intron (ENSMUSG00000020196.10, intron 29 of 36) protein_coding-intron (ENSMUSG00000020196.10, intron 29 of 36) -36924 ENSMUSG00000006342.15 ENSMUSG00000006342 ENSMUST00000077610 Susd2 protein_coding Interval_81083 chr18 53714540 53715446 + 0 NA intron (ENSMUSG00000048799.8, intron 12 of 14) protein_coding-intron (ENSMUSG00000048799.8, intron 13 of 20) 29570 ENSMUSG00000048799.8 ENSMUSG00000048799 ENSMUST00000235928 Cep120 protein_coding Interval_144195 chr7 19896301 19896839 + 0 NA promoter-TSS (ENSMUSG00000108942.1) TEC-promoter-TSS (ENSMUSG00000108942.1) -764 ENSMUSG00000108942.1 ENSMUSG00000108942 ENSMUST00000207134 Gm44660 TEC Interval_42157 chr13 9276286 9277851 + 0 NA promoter-TSS (ENSMUSG00000048264.16) protein_coding-promoter-TSS (ENSMUSG00000048264.16) -3947 ENSMUSG00000113755.1 ENSMUSG00000113755 ENSMUST00000220704 Gm46391 processed_pseudogene Interval_130661 chr5 129583834 129585239 + 0 NA intron (ENSMUSG00000029436.9, intron 1 of 9) protein_coding-intron (ENSMUSG00000029436.9, intron 1 of 9) -12090 ENSMUSG00000029436.9 ENSMUSG00000029436 ENSMUST00000177802 Mmp17 protein_coding Interval_110090 chr3 153230442 153231014 + 0 NA intron (ENSMUSG00000052544.9, intron 3 of 4) protein_coding-intron (ENSMUSG00000052544.9, intron 2 of 2) -47913 ENSMUSG00000105337.4 ENSMUSG00000105337 ENSMUST00000197695 1700094M23Rik lincRNA Interval_52036 chr14 34750529 34750979 + 0 NA Intergenic Intergenic -9473 ENSMUSG00000097310.2 ENSMUSG00000097310 ENSMUST00000181044 A930038B10Rik lincRNA Interval_16288 chr10 61980474 61980644 + 0 NA Intergenic Intergenic 20935 ENSMUSG00000112574.1 ENSMUSG00000112574 ENSMUST00000218711 Gm5750 processed_pseudogene Interval_108622 chr3 129609286 129609568 + 0 NA intron (ENSMUSG00000041220.10, intron 3 of 3) protein_coding-intron (ENSMUSG00000041220.10, intron 3 of 4) 71286 ENSMUSG00000106092.1 ENSMUSG00000106092 ENSMUST00000200283 Gm43072 TEC Interval_137099 chr6 67321979 67322217 + 0 NA intron (ENSMUSG00000018341.12, intron 2 of 9) protein_coding-intron (ENSMUSG00000018341.12, intron 8 of 15) 17596 ENSMUSG00000018341.12 ENSMUSG00000018341 ENSMUST00000018485 Il12rb2 protein_coding Interval_5684 chr1 90900658 90902158 + 0 NA Intergenic Intergenic -29989 ENSMUSG00000103978.1 ENSMUSG00000103978 ENSMUST00000194161 4930474B08Rik TEC Interval_58767 chr15 37960446 37961605 + 0 NA promoter-TSS (ENSMUSG00000022292.16) protein_coding-promoter-TSS (ENSMUSG00000022292.16) 554 ENSMUSG00000115249.1 ENSMUSG00000115249 ENSMUST00000228937 Gm49085 antisense Interval_161474 chr8 120622167 120622623 + 0 NA intron (ENSMUSG00000097919.1, intron 2 of 3) protein_coding-intron (ENSMUSG00000043687.15, intron 2 of 3) -21555 ENSMUSG00000097500.1 ENSMUSG00000097500 ENSMUST00000181474 Gm26537 antisense Interval_40335 chr12 103954612 103955375 + 0 NA intron (ENSMUSG00000072849.10, intron 1 of 4) protein_coding-intron (ENSMUSG00000072849.10, intron 1 of 4) 3982 ENSMUSG00000072849.10 ENSMUSG00000072849 ENSMUST00000085054 Serpina1e protein_coding Interval_83518 chr18 88759009 88759251 + 0 NA promoter-TSS (ENSMUSG00000056153.15) protein_coding-promoter-TSS (ENSMUSG00000056153.15) -67920 ENSMUSG00000117887.1 ENSMUSG00000117887 ENSMUST00000236521 Gm50404 processed_pseudogene Interval_12879 chr10 7187615 7189571 + 0 NA intron (ENSMUSG00000015202.13, intron 1 of 12) protein_coding-intron (ENSMUSG00000015202.13, intron 1 of 12) -53087 ENSMUSG00000015202.13 ENSMUSG00000015202 ENSMUST00000015346 Cnksr3 protein_coding Interval_21717 chr11 3904847 3906307 + 0 NA Intergenic Intergenic 9087 ENSMUSG00000048807.2 ENSMUSG00000048807 ENSMUST00000051207 Slc35e4 protein_coding Interval_105087 chr3 81081317 81081514 + 0 NA intron (ENSMUSG00000028019.9, intron 1 of 5) protein_coding-intron (ENSMUSG00000028019.9, intron 1 of 5) -40978 ENSMUSG00000085106.1 ENSMUSG00000085106 ENSMUST00000146657 Gm16000 antisense Interval_70233 chr17 7135360 7135953 + 0 NA Intergenic Intergenic -34471 ENSMUSG00000023809.10 ENSMUSG00000023809 ENSMUST00000231530 Rps6ka2 protein_coding Interval_115265 chr4 94992535 94992724 + 0 NA intron (ENSMUSG00000086251.1, intron 2 of 4) antisense-intron (ENSMUSG00000086251.1, intron 2 of 4) 13426 ENSMUSG00000086251.1 ENSMUSG00000086251 ENSMUST00000149367 Gm12694 antisense Interval_102909 chr3 32723677 32724391 + 0 NA intron (ENSMUSG00000027671.14, intron 2 of 3) protein_coding-intron (ENSMUSG00000027671.14, intron 12 of 13) -1945 ENSMUSG00000103590.1 ENSMUSG00000103590 ENSMUST00000194497 Gm37353 TEC Interval_81328 chr18 58084686 58085122 + 0 NA intron (ENSMUSG00000024598.9, intron 1 of 1) protein_coding-intron (ENSMUSG00000024598.9, intron 19 of 64) 125022 ENSMUSG00000024598.9 ENSMUSG00000024598 ENSMUST00000235779 Fbn2 protein_coding Interval_151267 chr7 120513398 120513954 + 0 NA TTS (ENSMUSG00000109326.1) processed_pseudogene-TTS (ENSMUSG00000109326.1) 9018 ENSMUSG00000109326.1 ENSMUSG00000109326 ENSMUST00000208467 Gm9165 processed_pseudogene Interval_18286 chr10 84584924 84585177 + 0 NA exon (ENSMUSG00000020034.7, exon 2 of 10) protein_coding-exon (ENSMUSG00000020034.7, exon 2 of 10) 8153 ENSMUSG00000020034.7 ENSMUSG00000020034 ENSMUST00000160057 Tcp11l2 protein_coding Interval_73185 chr17 35357662 35357858 + 0 NA Intergenic Intergenic -1229 ENSMUSG00000092253.1 ENSMUSG00000092253 ENSMUST00000172583 H2-Q3 unprocessed_pseudogene Interval_74731 chr17 56196650 56197348 + 0 NA TTS (ENSMUSG00000001229.9) protein_coding-TTS (ENSMUSG00000001229.9) -13335 ENSMUSG00000019579.13 ENSMUSG00000019579 ENSMUST00000151093 Mydgf protein_coding Interval_109819 chr3 148221799 148222102 + 0 NA Intergenic Intergenic 91706 ENSMUSG00000106285.1 ENSMUSG00000106285 ENSMUST00000196226 Gm43574 processed_transcript Interval_118616 chr4 132785288 132786630 + 0 NA exon (ENSMUSG00000037731.5, exon 4 of 6) protein_coding-exon (ENSMUSG00000037731.5, exon 4 of 6) 10428 ENSMUSG00000037731.5 ENSMUSG00000037731 ENSMUST00000045154 Themis2 protein_coding Interval_134754 chr6 31219901 31220811 + 0 NA promoter-TSS (ENSMUSG00000087380.7) processed_transcript-promoter-TSS (ENSMUSG00000087380.7) -3990 ENSMUSG00000044471.12 ENSMUSG00000044471 ENSMUST00000229779 Lncpint lincRNA Interval_35126 chr12 17449326 17450229 + 0 NA Intergenic Intergenic 13159 ENSMUSG00000113246.1 ENSMUSG00000113246 ENSMUST00000220527 Gm36752 lincRNA Interval_89508 chr2 21282116 21283082 + 0 NA Intergenic Intergenic 38494 ENSMUSG00000084071.1 ENSMUSG00000084071 ENSMUST00000117483 Gm13378 processed_pseudogene Interval_22163 chr11 6719197 6720835 + 0 NA promoter-TSS (ENSMUSG00000080833.1) processed_pseudogene-promoter-TSS (ENSMUSG00000080833.1) 21 ENSMUSG00000086808.1 ENSMUSG00000086808 ENSMUST00000139769 Gm11981 processed_transcript Interval_54875 chr14 75933644 75934767 + 0 NA intron (ENSMUSG00000067995.4, intron 5 of 7) protein_coding-intron (ENSMUSG00000067995.4, intron 5 of 7) -20804 ENSMUSG00000046523.5 ENSMUSG00000046523 ENSMUST00000050120 Kctd4 protein_coding Interval_19484 chr10 100065443 100066656 + 0 NA intron (ENSMUSG00000019966.18, intron 3 of 3) protein_coding-intron (ENSMUSG00000019966.18, intron 3 of 8) -22007 ENSMUSG00000019966.18 ENSMUSG00000019966 ENSMUST00000219881 Kitl protein_coding Interval_134416 chr6 28479609 28480785 + 0 NA promoter-TSS (ENSMUSG00000001424.14) protein_coding-promoter-TSS (ENSMUSG00000001424.14) -232 ENSMUSG00000001424.14 ENSMUSG00000001424 ENSMUST00000165151 Snd1 protein_coding Interval_53676 chr14 60799181 60800323 + 0 NA TTS (ENSMUSG00000021993.10) protein_coding-TTS (ENSMUSG00000021993.10) 15170 ENSMUSG00000021993.10 ENSMUSG00000021993 ENSMUST00000223709 Mipep protein_coding Interval_58549 chr15 36003411 36004914 + 0 NA Intergenic Intergenic -24736 ENSMUSG00000088786.1 ENSMUSG00000088786 ENSMUST00000158161 Gm25372 misc_RNA Interval_89039 chr2 14911017 14911230 + 0 NA intron (ENSMUSG00000057914.15, intron 2 of 7) protein_coding-intron (ENSMUSG00000057914.15, intron 2 of 7) -33785 ENSMUSG00000102673.1 ENSMUSG00000102673 ENSMUST00000194451 Gm37437 TEC Interval_56477 chr14 119020015 119020210 + 0 NA intron (ENSMUSG00000042104.18, intron 3 of 5) protein_coding-intron (ENSMUSG00000042104.18, intron 15 of 17) 15927 ENSMUSG00000042104.18 ENSMUSG00000042104 ENSMUST00000136924 Uggt2 protein_coding Interval_74615 chr17 53780755 53781173 + 0 NA Intergenic Intergenic 6205 ENSMUSG00000105075.1 ENSMUSG00000105075 ENSMUST00000197823 Mark1-ps2 processed_pseudogene Interval_67700 chr16 56037087 56038141 + 0 NA exon (ENSMUSG00000044763.8, exon 1 of 2) protein_coding-exon (ENSMUSG00000044763.8, exon 1 of 2) 205 ENSMUSG00000044763.8 ENSMUSG00000044763 ENSMUST00000059052 Trmt10c protein_coding Interval_742 chr1 10395238 10396185 + 0 NA intron (ENSMUSG00000042501.12, intron 7 of 9) protein_coding-intron (ENSMUSG00000042501.12, intron 8 of 10) 56278 ENSMUSG00000103810.1 ENSMUSG00000103810 ENSMUST00000194845 Gm38005 TEC Interval_50861 chr14 20268976 20269524 + 0 NA promoter-TSS (ENSMUSG00000023387.8) protein_coding-promoter-TSS (ENSMUSG00000023387.8) -1834 ENSMUSG00000023387.8 ENSMUSG00000023387 ENSMUST00000024155 Kcnk16 protein_coding Interval_170533 chr9 108560155 108560922 + 0 NA promoter-TSS (ENSMUSG00000062867.13) protein_coding-promoter-TSS (ENSMUSG00000062867.13) -2731 ENSMUSG00000062867.13 ENSMUSG00000062867 ENSMUST00000194689 Impdh2 protein_coding Interval_102946 chr3 33132617 33132891 + 0 NA intron (ENSMUSG00000027674.16, intron 1 of 1) protein_coding-intron (ENSMUSG00000027674.16, intron 1 of 10) 10429 ENSMUSG00000027674.16 ENSMUSG00000027674 ENSMUST00000194627 Pex5l protein_coding Interval_21625 chr11 3306153 3306428 + 0 NA exon (ENSMUSG00000020453.17, exon 4 of 5) protein_coding-exon (ENSMUSG00000020453.17, exon 4 of 5) -2706 ENSMUSG00000084941.1 ENSMUSG00000084941 ENSMUST00000152576 Gm11944 processed_transcript Interval_126944 chr5 97988333 97989138 + 0 NA intron (ENSMUSG00000029338.13, intron 7 of 17) protein_coding-intron (ENSMUSG00000029338.13, intron 7 of 16) 7360 ENSMUSG00000029338.13 ENSMUSG00000029338 ENSMUST00000202736 Antxr2 protein_coding Interval_104267 chr3 62428473 62428869 + 0 NA exon (ENSMUSG00000036885.14, exon 1 of 1) protein_coding-exon (ENSMUSG00000036885.14, exon 1 of 1) 1491 ENSMUSG00000036885.14 ENSMUSG00000036885 ENSMUST00000192138 Arhgef26 protein_coding Interval_31538 chr11 101245915 101247313 + 0 NA promoter-TSS (ENSMUSG00000001240.13) protein_coding-promoter-TSS (ENSMUSG00000001240.13) 47 ENSMUSG00000001240.13 ENSMUSG00000001240 ENSMUST00000107282 Ramp2 protein_coding Interval_140392 chr6 117814734 117815175 + 0 NA Intergenic Intergenic 6234 ENSMUSG00000071237.4 ENSMUSG00000071237 ENSMUST00000120444 Gemin6-ps processed_pseudogene Interval_153892 chr8 10775237 10776154 + 0 NA Intergenic Intergenic 33433 ENSMUSG00000096258.2 ENSMUSG00000096258 ENSMUST00000179126 Rps16-ps3 processed_pseudogene Interval_138644 chr6 90683838 90684279 + 0 NA intron (ENSMUSG00000034312.15, intron 3 of 8) protein_coding-intron (ENSMUSG00000034312.15, intron 3 of 13) -2538 ENSMUSG00000093052.2 ENSMUSG00000093052 ENSMUST00000175311 Gm24816 miRNA Interval_70454 chr17 10334697 10336312 + 0 NA Intergenic Intergenic 10902 ENSMUSG00000099384.6 ENSMUSG00000099384 ENSMUST00000188715 1700110C19Rik lincRNA Interval_54739 chr14 74513982 74514786 + 0 NA Intergenic Intergenic 33163 ENSMUSG00000115449.1 ENSMUSG00000115449 ENSMUST00000227527 Gm49175 lincRNA Interval_99650 chr2 163947779 163948382 + 0 NA Intergenic Intergenic -29397 ENSMUSG00000035226.5 ENSMUSG00000035226 ENSMUST00000044734 Rims4 protein_coding Interval_76949 chr17 85117958 85118253 + 0 NA intron (ENSMUSG00000071037.6, intron 3 of 10) protein_coding-intron (ENSMUSG00000071037.6, intron 3 of 10) 27499 ENSMUSG00000071037.6 ENSMUSG00000071037 ENSMUST00000234501 Camkmt protein_coding Interval_16130 chr10 60893835 60894088 + 0 NA Intergenic Intergenic -29062 ENSMUSG00000099279.1 ENSMUSG00000099279 ENSMUST00000183643 Mir6408 miRNA Interval_19959 chr10 111505996 111507879 + 0 NA promoter-TSS (ENSMUSG00000020205.8) protein_coding-promoter-TSS (ENSMUSG00000020205.8) 725 ENSMUSG00000100113.1 ENSMUSG00000100113 ENSMUST00000186844 Gm28592 lincRNA Interval_11925 chr1 187210272 187211274 + 0 NA intron (ENSMUSG00000026611.17, intron 1 of 10) protein_coding-intron (ENSMUSG00000026611.17, intron 1 of 9) -4765 ENSMUSG00000039210.16 ENSMUSG00000039210 ENSMUST00000160570 Gpatch2 protein_coding Interval_25444 chr11 48605109 48605329 + 0 NA Intergenic Intergenic 9940 ENSMUSG00000082250.1 ENSMUSG00000082250 ENSMUST00000121448 Gm12181 processed_pseudogene Interval_57947 chr15 25688768 25689094 + 0 NA intron (ENSMUSG00000022272.17, intron 1 of 4) protein_coding-intron (ENSMUSG00000022272.17, intron 2 of 40) 7133 ENSMUSG00000089639.1 ENSMUSG00000089639 ENSMUST00000161524 Gm2862 processed_pseudogene Interval_154871 chr8 24523942 24524255 + 0 NA Intergenic Intergenic 17668 ENSMUSG00000109237.1 ENSMUSG00000109237 ENSMUST00000208727 9130214F15Rik TEC Interval_27570 chr11 68780715 68780905 + 0 NA intron (ENSMUSG00000020900.15, intron 17 of 42) protein_coding-intron (ENSMUSG00000020900.15, intron 17 of 42) 79186 ENSMUSG00000018736.14 ENSMUSG00000018736 ENSMUST00000127469 Ndel1 protein_coding Interval_163242 chr9 19159759 19160712 + 0 NA Intergenic Intergenic -5675 ENSMUSG00000110645.1 ENSMUSG00000110645 ENSMUST00000211872 Olfr838-ps1 unprocessed_pseudogene Interval_49354 chr13 111432465 111432721 + 0 NA intron (ENSMUSG00000032745.18, intron 10 of 10) protein_coding-intron (ENSMUSG00000032745.18, intron 12 of 12) 20830 ENSMUSG00000032745.18 ENSMUSG00000032745 ENSMUST00000129638 Gpbp1 protein_coding Interval_77639 chr17 93475820 93476817 + 0 NA Intergenic Intergenic -84620 ENSMUSG00000117368.1 ENSMUSG00000117368 ENSMUST00000234726 Gm50001 processed_pseudogene Interval_39528 chr12 89331294 89331631 + 0 NA intron (ENSMUSG00000066392.12, intron 5 of 18) protein_coding-intron (ENSMUSG00000066392.12, intron 6 of 19) -32879 ENSMUSG00000098757.1 ENSMUSG00000098757 ENSMUST00000183500 Gm27313 miRNA Interval_107374 chr3 106995424 106996122 + 0 NA intron (ENSMUSG00000098108.7, intron 2 of 5) antisense-intron (ENSMUSG00000098108.7, intron 2 of 5) -40396 ENSMUSG00000047959.4 ENSMUSG00000047959 ENSMUST00000052718 Kcna3 protein_coding Interval_130231 chr5 125089417 125090343 + 0 NA intron (ENSMUSG00000029478.16, intron 9 of 47) protein_coding-intron (ENSMUSG00000029478.16, intron 8 of 45) 3039 ENSMUSG00000106663.1 ENSMUSG00000106663 ENSMUST00000198978 Gm42839 antisense Interval_145571 chr7 35667957 35668793 + 0 NA Intergenic Intergenic -25331 ENSMUSG00000030417.15 ENSMUSG00000030417 ENSMUST00000130340 Pdcd5 protein_coding Interval_69937 chr17 3313895 3314892 + 0 NA promoter-TSS (ENSMUSG00000116838.1) processed_pseudogene-promoter-TSS (ENSMUSG00000116838.1) -208 ENSMUSG00000116838.1 ENSMUSG00000116838 ENSMUST00000231500 Gm6475 processed_pseudogene Interval_60342 chr15 73038405 73038702 + 0 NA intron (ENSMUSG00000047921.17, intron 4 of 16) protein_coding-intron (ENSMUSG00000047921.17, intron 4 of 21) 22492 ENSMUSG00000047921.17 ENSMUSG00000047921 ENSMUST00000228960 Trappc9 protein_coding Interval_41152 chr12 111519982 111521004 + 0 NA Intergenic Intergenic -19086 ENSMUSG00000021282.17 ENSMUSG00000021282 ENSMUST00000221243 Eif5 protein_coding Interval_31409 chr11 100520815 100521032 + 0 NA intron (ENSMUSG00000020917.17, intron 2 of 26) protein_coding-intron (ENSMUSG00000020917.17, intron 3 of 27) 2675 ENSMUSG00000020917.17 ENSMUSG00000020917 ENSMUST00000107385 Acly protein_coding Interval_57106 chr15 6500906 6501128 + 0 NA TTS (ENSMUSG00000088749.1) misc_RNA-TTS (ENSMUSG00000088749.1) 320 ENSMUSG00000088749.1 ENSMUSG00000088749 ENSMUST00000158124 Gm23218 misc_RNA Interval_109576 chr3 144587133 144588082 + 0 NA promoter-TSS (ENSMUSG00000064960.1) snoRNA-promoter-TSS (ENSMUSG00000064960.1) -655 ENSMUSG00000064960.1 ENSMUSG00000064960 ENSMUST00000083026 Gm24406 snoRNA Interval_127715 chr5 107001364 107002281 + 0 NA Intergenic Intergenic 27276 ENSMUSG00000029283.17 ENSMUSG00000029283 ENSMUST00000123546 Cdc7 protein_coding Interval_10600 chr1 172143569 172143830 + 0 NA TTS (ENSMUSG00000089803.3) processed_pseudogene-TTS (ENSMUSG00000089803.3) 1202 ENSMUSG00000089803.3 ENSMUSG00000089803 ENSMUST00000126220 Gm10171 processed_pseudogene Interval_83397 chr18 84878974 84879174 + 0 NA intron (ENSMUSG00000024646.14, intron 5 of 5) protein_coding-intron (ENSMUSG00000024646.14, intron 5 of 5) -19488 ENSMUSG00000089744.2 ENSMUSG00000089744 ENSMUST00000160306 Gm16146 antisense Interval_17858 chr10 80441471 80442048 + 0 NA Intergenic Intergenic -10774 ENSMUSG00000020167.14 ENSMUSG00000020167 ENSMUST00000156244 Tcf3 protein_coding Interval_172047 chr9 123931889 123932122 + 0 NA Intergenic Intergenic 36687 ENSMUSG00000025804.5 ENSMUSG00000025804 ENSMUST00000026911 Ccr1 protein_coding Interval_171747 chr9 120679427 120680515 + 0 NA intron (ENSMUSG00000111533.1, intron 3 of 4) processed_transcript-intron (ENSMUSG00000111533.1, intron 3 of 4) 5566 ENSMUSG00000111533.1 ENSMUSG00000111533 ENSMUST00000214671 Gm39458 processed_transcript Interval_72809 chr17 32295804 32296872 + 0 NA intron (ENSMUSG00000097217.2, intron 1 of 1) bidirectional_promoter_lncRNA-intron (ENSMUSG00000097217.2, intron 1 of 1) 11549 ENSMUSG00000097217.2 ENSMUSG00000097217 ENSMUST00000181112 Gm26549 bidirectional_promoter_lncRNA Interval_3465 chr1 58585591 58586844 + 0 NA promoter-TSS (ENSMUSG00000026032.8) protein_coding-promoter-TSS (ENSMUSG00000026032.8) -167 ENSMUSG00000026032.8 ENSMUSG00000026032 ENSMUST00000027193 Ndufb3 protein_coding Interval_111111 chr4 12126343 12127136 + 0 NA exon (ENSMUSG00000081593.1, exon 1 of 1) processed_pseudogene-exon (ENSMUSG00000081593.1, exon 1 of 1) 1449 ENSMUSG00000081593.1 ENSMUSG00000081593 ENSMUST00000117060 Gm11841 processed_pseudogene Interval_109283 chr3 138624757 138625831 + 0 NA Intergenic Intergenic 18650 ENSMUSG00000105126.1 ENSMUSG00000105126 ENSMUST00000196886 Gm43723 processed_pseudogene Interval_35013 chr12 16653375 16654403 + 0 NA exon (ENSMUSG00000020591.11, exon 1 of 4) protein_coding-exon (ENSMUSG00000020591.11, exon 1 of 4) 151 ENSMUSG00000020591.11 ENSMUSG00000020591 ENSMUST00000221049 Ntsr2 protein_coding Interval_78516 chr18 13972283 13972957 + 0 NA promoter-TSS (ENSMUSG00000024420.9) protein_coding-promoter-TSS (ENSMUSG00000024420.9) -69150 ENSMUSG00000117600.1 ENSMUSG00000117600 ENSMUST00000234954 Gm50094 TEC Interval_71194 chr17 21053130 21053458 + 0 NA Intergenic Intergenic 7482 ENSMUSG00000101511.1 ENSMUSG00000101511 ENSMUST00000189217 Gm5681 unprocessed_pseudogene Interval_60597 chr15 75589001 75589289 + 0 NA Intergenic Intergenic -7523 ENSMUSG00000022579.10 ENSMUSG00000022579 ENSMUST00000186934 Gpihbp1 protein_coding Interval_119327 chr4 136886435 136886713 + 0 NA promoter-TSS (ENSMUSG00000036905.8) protein_coding-promoter-TSS (ENSMUSG00000036905.8) -387 ENSMUSG00000036905.8 ENSMUSG00000036905 ENSMUST00000046384 C1qb protein_coding Interval_127880 chr5 108537918 108538932 + 0 NA intron (ENSMUSG00000033615.9, intron 2 of 3) protein_coding-intron (ENSMUSG00000033615.9, intron 2 of 3) 11575 ENSMUSG00000033615.9 ENSMUSG00000033615 ENSMUST00000129040 Cplx1 protein_coding Interval_169391 chr9 96873016 96873323 + 0 NA intron (ENSMUSG00000043587.15, intron 1 of 6) protein_coding-intron (ENSMUSG00000043587.15, intron 1 of 5) 16264 ENSMUSG00000043587.15 ENSMUSG00000043587 ENSMUST00000185561 Pxylp1 protein_coding Interval_139611 chr6 102832789 102833550 + 0 NA Intergenic Intergenic -29199 ENSMUSG00000089288.1 ENSMUSG00000089288 ENSMUST00000158663 Gm26022 snRNA Interval_42337 chr13 12203437 12203691 + 0 NA intron (ENSMUSG00000021311.9, intron 24 of 32) protein_coding-intron (ENSMUSG00000021311.9, intron 24 of 32) -24283 ENSMUSG00000113789.1 ENSMUSG00000113789 ENSMUST00000221565 Gm47322 TEC Interval_131406 chr5 136970784 136971278 + 0 NA intron (ENSMUSG00000001739.14, intron 2 of 5) protein_coding-intron (ENSMUSG00000001739.14, intron 1 of 4) -2923 ENSMUSG00000001739.14 ENSMUSG00000001739 ENSMUST00000128391 Cldn15 protein_coding Interval_110397 chr3 157725433 157725623 + 0 NA exon (ENSMUSG00000106632.1, exon 2 of 3) lincRNA-exon (ENSMUSG00000106632.1, exon 2 of 3) 880 ENSMUSG00000106632.1 ENSMUSG00000106632 ENSMUST00000199819 Gm33466 lincRNA Interval_128842 chr5 115548390 115548953 + 0 NA exon (ENSMUSG00000029528.19, exon 4 of 4) protein_coding-exon (ENSMUSG00000029528.19, exon 4 of 4) -10866 ENSMUSG00000067274.10 ENSMUSG00000067274 ENSMUST00000155584 Rplp0 protein_coding Interval_91678 chr2 47163133 47163606 + 0 NA Intergenic Intergenic -378615 ENSMUSG00000092853.1 ENSMUSG00000092853 ENSMUST00000175112 Gm25959 miRNA Interval_5523 chr1 89538191 89538577 + 0 NA intron (ENSMUSG00000055013.16, intron 1 of 16) protein_coding-intron (ENSMUSG00000055013.16, intron 1 of 17) -24976 ENSMUSG00000088371.1 ENSMUSG00000088371 ENSMUST00000157746 Gm25180 rRNA Interval_126683 chr5 92032159 92032567 + 0 NA intron (ENSMUSG00000029403.14, intron 5 of 12) protein_coding-intron (ENSMUSG00000029403.14, intron 5 of 12) 11520 ENSMUSG00000029403.14 ENSMUSG00000029403 ENSMUST00000201895 Cdkl2 protein_coding Interval_100113 chr2 167143975 167145404 + 0 NA intron (ENSMUSG00000050556.9, intron 1 of 1) protein_coding-intron (ENSMUSG00000050556.9, intron 2 of 2) -44013 ENSMUSG00000085151.7 ENSMUSG00000085151 ENSMUST00000147446 1110018N20Rik processed_transcript Interval_155081 chr8 26254705 26255627 + 0 NA Intergenic Intergenic -11811 ENSMUSG00000110417.1 ENSMUSG00000110417 ENSMUST00000210102 Gm31727 lincRNA Interval_86815 chr19 44049260 44050147 + 0 NA intron (ENSMUSG00000025198.16, intron 6 of 10) protein_coding-intron (ENSMUSG00000025198.16, intron 7 of 11) 17980 ENSMUSG00000025198.16 ENSMUSG00000025198 ENSMUST00000169092 Erlin1 protein_coding Interval_6657 chr1 118578835 118579353 + 0 NA intron (ENSMUSG00000064302.13, intron 10 of 14) protein_coding-intron (ENSMUSG00000064302.13, intron 35 of 39) -48851 ENSMUSG00000026380.10 ENSMUSG00000026380 ENSMUST00000027629 Tfcp2l1 protein_coding Interval_113867 chr4 59450457 59451308 + 0 NA Intergenic Intergenic -81865 ENSMUSG00000080831.1 ENSMUSG00000080831 ENSMUST00000119529 Gm12529 processed_pseudogene Interval_168694 chr9 86007840 86009329 + 0 NA Intergenic Intergenic -65384 ENSMUSG00000110946.1 ENSMUSG00000110946 ENSMUST00000213921 Gm47604 lincRNA Interval_116777 chr4 117251450 117252500 + 0 NA promoter-TSS (ENSMUSG00000048772.15) protein_coding-promoter-TSS (ENSMUSG00000048772.15) -58 ENSMUSG00000060268.12 ENSMUSG00000060268 ENSMUST00000130660 Armh1 protein_coding Interval_48185 chr13 97059904 97061095 + 0 NA Intergenic Intergenic -6787 ENSMUSG00000041817.14 ENSMUSG00000041817 ENSMUST00000042517 Fam169a protein_coding Interval_107260 chr3 105032025 105032221 + 0 NA intron (ENSMUSG00000062127.11, intron 3 of 4) protein_coding-intron (ENSMUSG00000062127.11, intron 3 of 5) 20802 ENSMUSG00000062127.11 ENSMUSG00000062127 ENSMUST00000199002 Cttnbp2nl protein_coding Interval_163928 chr9 28870781 28870968 + 0 NA intron (ENSMUSG00000110741.1, intron 1 of 2) protein_coding-intron (ENSMUSG00000062257.13, intron 3 of 6) 83473 ENSMUSG00000110741.1 ENSMUSG00000110741 ENSMUST00000215483 Gm48091 antisense Interval_150677 chr7 113260358 113260876 + 0 NA intron (ENSMUSG00000055116.8, intron 3 of 20) protein_coding-intron (ENSMUSG00000055116.8, intron 2 of 19) 25994 ENSMUSG00000055116.8 ENSMUSG00000055116 ENSMUST00000211547 Arntl protein_coding Interval_89057 chr2 15095741 15096807 + 0 NA Intergenic Intergenic -31326 ENSMUSG00000083860.2 ENSMUSG00000083860 ENSMUST00000118938 Gm13313 processed_pseudogene Interval_109059 chr3 135507876 135508535 + 0 NA intron (ENSMUSG00000028164.15, intron 2 of 2) protein_coding-intron (ENSMUSG00000028164.15, intron 2 of 16) 12552 ENSMUSG00000083045.1 ENSMUSG00000083045 ENSMUST00000120489 Gm16100 processed_pseudogene Interval_166450 chr9 59584612 59585531 + 0 NA intron (ENSMUSG00000032297.11, intron 2 of 11) protein_coding-intron (ENSMUSG00000032297.11, intron 2 of 11) -17587 ENSMUSG00000032297.11 ENSMUSG00000032297 ENSMUST00000129728 Celf6 protein_coding Interval_95743 chr2 115610396 115610656 + 0 NA intron (ENSMUSG00000040282.13, intron 1 of 10) protein_coding-intron (ENSMUSG00000040282.13, intron 1 of 10) -28199 ENSMUSG00000088606.1 ENSMUSG00000088606 ENSMUST00000157981 Mir1951 miRNA Interval_108099 chr3 121481422 121481675 + 0 NA intron (ENSMUSG00000039865.8, intron 12 of 14) protein_coding-intron (ENSMUSG00000039865.8, intron 12 of 14) 24435 ENSMUSG00000053931.11 ENSMUSG00000053931 ENSMUST00000199499 Cnn3 protein_coding Interval_172238 chrX 11664275 11665970 + 0 NA Intergenic Intergenic 19002 ENSMUSG00000080811.1 ENSMUSG00000080811 ENSMUST00000117403 Gm14513 processed_pseudogene Interval_115427 chr4 98863316 98866281 + 0 NA Intergenic Intergenic 9184 ENSMUSG00000084188.1 ENSMUSG00000084188 ENSMUST00000117920 Gm12851 processed_pseudogene Interval_1873 chr1 34236232 34236699 + 0 NA promoter-TSS (ENSMUSG00000026131.20) protein_coding-promoter-TSS (ENSMUSG00000026131.20) 34663 ENSMUSG00000103001.1 ENSMUSG00000103001 ENSMUST00000194920 A930005N03Rik TEC Interval_66191 chr16 32239084 32240024 + 0 NA intron (ENSMUSG00000035764.5, intron 1 of 2) protein_coding-intron (ENSMUSG00000035764.5, intron 1 of 2) 4301 ENSMUSG00000080440.1 ENSMUSG00000080440 ENSMUST00000116790 Gm25848 snoRNA Interval_100005 chr2 166418228 166418843 + 0 NA Intergenic Intergenic -20378 ENSMUSG00000087617.1 ENSMUSG00000087617 ENSMUST00000132465 Gm14268 lincRNA Interval_70215 chr17 6759836 6760200 + 0 NA intron (ENSMUSG00000052397.8, intron 1 of 12) protein_coding-intron (ENSMUSG00000052397.8, intron 1 of 12) -17197 ENSMUSG00000052397.8 ENSMUSG00000052397 ENSMUST00000131131 Ezr protein_coding Interval_110637 chr4 5609637 5609849 + 0 NA Intergenic Intergenic -6348 ENSMUSG00000084237.1 ENSMUSG00000084237 ENSMUST00000118328 Gm11781 processed_pseudogene Interval_87976 chr19 57497015 57497922 + 0 NA promoter-TSS (ENSMUSG00000117655.1) lincRNA-promoter-TSS (ENSMUSG00000117655.1) -11096 ENSMUSG00000117655.1 ENSMUSG00000117655 ENSMUST00000234605 6720468P15Rik lincRNA Interval_171164 chr9 114887869 114889493 + 0 NA Intergenic Intergenic -44525 ENSMUSG00000041012.4 ENSMUSG00000041012 ENSMUST00000213929 Cmtm8 protein_coding Interval_86748 chr19 43599627 43601785 + 0 NA Intergenic Intergenic 9919 ENSMUSG00000092250.1 ENSMUSG00000092250 ENSMUST00000172872 Gm20467 lincRNA Interval_6321 chr1 105863085 105863394 + 0 NA Intergenic Intergenic 27773 ENSMUSG00000102690.1 ENSMUSG00000102690 ENSMUST00000194221 Gm37779 TEC Interval_72934 chr17 33641609 33642055 + 0 NA exon (ENSMUSG00000032739.16, exon 2 of 10) protein_coding-exon (ENSMUSG00000032739.16, exon 2 of 10) -2985 ENSMUSG00000032739.16 ENSMUSG00000032739 ENSMUST00000166215 Pram1 protein_coding Interval_105156 chr3 82915716 82916678 + 0 NA intron (ENSMUSG00000086273.7, intron 1 of 3) antisense-intron (ENSMUSG00000086273.7, intron 1 of 3) -12224 ENSMUSG00000028003.6 ENSMUSG00000028003 ENSMUST00000029632 Lrat protein_coding Interval_82303 chr18 70518096 70518374 + 0 NA intron (ENSMUSG00000038425.18, intron 7 of 9) protein_coding-intron (ENSMUSG00000038425.18, intron 7 of 9) 1449 ENSMUSG00000098721.1 ENSMUSG00000098721 ENSMUST00000184246 Mir6357 miRNA Interval_71014 chr17 17205727 17206030 + 0 NA Intergenic Intergenic -56472 ENSMUSG00000116802.1 ENSMUSG00000116802 ENSMUST00000231376 Gm5165 lincRNA Interval_33728 chr11 118140434 118141770 + 0 NA intron (ENSMUSG00000017132.17, intron 12 of 13) protein_coding-intron (ENSMUSG00000017132.17, intron 12 of 13) 26247 ENSMUSG00000085511.1 ENSMUSG00000085511 ENSMUST00000134069 Gm11738 antisense Interval_144564 chr7 25963165 25963823 + 0 NA Intergenic Intergenic 13241 ENSMUSG00000108552.1 ENSMUSG00000108552 ENSMUST00000205585 Gm45227 processed_pseudogene Interval_110071 chr3 152966678 152966897 + 0 NA TTS (ENSMUSG00000105894.1) TEC-TTS (ENSMUSG00000105894.1) 1354 ENSMUSG00000105894.1 ENSMUSG00000105894 ENSMUST00000200608 Gm42710 TEC Interval_101652 chr3 8554342 8554988 + 0 NA intron (ENSMUSG00000027500.10, intron 3 of 4) protein_coding-intron (ENSMUSG00000027500.10, intron 3 of 4) 45079 ENSMUSG00000027500.10 ENSMUSG00000027500 ENSMUST00000194307 Stmn2 protein_coding Interval_111524 chr4 22452466 22453120 + 0 NA Intergenic Intergenic 35573 ENSMUSG00000095139.2 ENSMUSG00000095139 ENSMUST00000178174 Pou3f2 protein_coding Interval_9345 chr1 156473866 156474602 + 0 NA promoter-TSS (ENSMUSG00000026600.12) protein_coding-promoter-TSS (ENSMUSG00000026600.12) 6 ENSMUSG00000026600.12 ENSMUSG00000026600 ENSMUST00000188027 Soat1 protein_coding Interval_61802 chr15 84239189 84239850 + 0 NA intron (ENSMUSG00000022438.6, intron 1 of 12) protein_coding-intron (ENSMUSG00000022438.6, intron 1 of 12) -17621 ENSMUSG00000022438.6 ENSMUSG00000022438 ENSMUST00000131158 Parvb protein_coding Interval_61427 chr15 81553080 81553278 + 0 NA Intergenic Intergenic 31849 ENSMUSG00000103520.1 ENSMUSG00000103520 ENSMUST00000192082 1110025M09Rik TEC Interval_37575 chr12 69986302 69987468 + 0 NA exon (ENSMUSG00000021067.8, exon 1 of 5) protein_coding-exon (ENSMUSG00000021067.8, exon 1 of 5) -2628 ENSMUSG00000021067.8 ENSMUSG00000021067 ENSMUST00000222827 Sav1 protein_coding Interval_46370 chr13 64274192 64276183 + 0 NA promoter-TSS (ENSMUSG00000033102.15) protein_coding-promoter-TSS (ENSMUSG00000033102.15) 13073 ENSMUSG00000113603.1 ENSMUSG00000113603 ENSMUST00000221580 Gm47004 TEC Interval_65149 chr16 20190652 20192347 + 0 NA TTS (ENSMUSG00000041215.16) protein_coding-TTS (ENSMUSG00000041215.16) -14487 ENSMUSG00000084838.3 ENSMUSG00000084838 ENSMUST00000117664 Gm10241 processed_pseudogene Interval_42302 chr13 11918330 11918551 + 0 NA intron (ENSMUSG00000021313.16, intron 2 of 2) protein_coding-intron (ENSMUSG00000021313.16, intron 2 of 104) -21118 ENSMUSG00000098110.1 ENSMUSG00000098110 ENSMUST00000182176 Gm26956 processed_pseudogene Interval_105991 chr3 90484084 90484621 + 0 NA exon (ENSMUSG00000001016.12, exon 7 of 7) protein_coding-exon (ENSMUSG00000001016.12, exon 7 of 7) 6641 ENSMUSG00000001018.15 ENSMUSG00000001018 ENSMUST00000107351 Snapin protein_coding Interval_61678 chr15 83344213 83346409 + 0 NA intron (ENSMUSG00000054277.8, intron 1 of 15) protein_coding-intron (ENSMUSG00000054277.8, intron 1 of 15) -12044 ENSMUSG00000054277.8 ENSMUSG00000054277 ENSMUST00000227511 Arfgap3 protein_coding Interval_116197 chr4 108634449 108636198 + 0 NA intron (ENSMUSG00000091985.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000091985.1, intron 1 of 1) 2118 ENSMUSG00000091985.1 ENSMUSG00000091985 ENSMUST00000170933 Gm17354 lincRNA Interval_165686 chr9 50944056 50944550 + 0 NA intron (ENSMUSG00000037112.16, intron 3 of 3) protein_coding-intron (ENSMUSG00000037112.16, intron 3 of 15) 56353 ENSMUSG00000088708.1 ENSMUSG00000088708 ENSMUST00000158083 Gm25558 snRNA Interval_137313 chr6 71252649 71252941 + 0 NA intron (ENSMUSG00000055027.17, intron 1 of 9) protein_coding-intron (ENSMUSG00000055027.17, intron 1 of 9) -18876 ENSMUSG00000098623.1 ENSMUSG00000098623 ENSMUST00000184382 Mir8112 miRNA Interval_32732 chr11 110136662 110136947 + 0 NA intron (ENSMUSG00000041797.7, intron 19 of 38) protein_coding-intron (ENSMUSG00000041797.7, intron 19 of 38) 31251 ENSMUSG00000041797.7 ENSMUSG00000041797 ENSMUST00000126499 Abca9 protein_coding Interval_87414 chr19 49340569 49341368 + 0 NA Intergenic Intergenic -213050 ENSMUSG00000117931.1 ENSMUSG00000117931 ENSMUST00000238143 Gm50444 unprocessed_pseudogene Interval_173979 chrX 121265252 121265583 + 0 NA Intergenic Intergenic 42923 ENSMUSG00000087716.2 ENSMUSG00000087716 ENSMUST00000157091 Gm25825 scaRNA Interval_105183 chr3 83434780 83435442 + 0 NA Intergenic Intergenic 31709 ENSMUSG00000103459.1 ENSMUSG00000103459 ENSMUST00000193692 Gm38096 lincRNA Interval_164422 chr9 36909660 36909894 + 0 NA intron (ENSMUSG00000035934.16, intron 7 of 10) protein_coding-intron (ENSMUSG00000035934.16, intron 9 of 12) 76969 ENSMUSG00000032118.16 ENSMUSG00000032118 ENSMUST00000161978 Fez1 protein_coding Interval_69065 chr16 90398113 90398345 + 0 NA intron (ENSMUSG00000053414.8, intron 1 of 10) protein_coding-intron (ENSMUSG00000053414.8, intron 1 of 10) -2315 ENSMUSG00000053414.8 ENSMUSG00000053414 ENSMUST00000231603 Hunk protein_coding Interval_31048 chr11 97871508 97872038 + 0 NA intron (ENSMUSG00000070336.3, intron 4 of 10) protein_coding-intron (ENSMUSG00000070336.3, intron 4 of 10) -12821 ENSMUSG00000086917.1 ENSMUSG00000086917 ENSMUST00000152825 Gm11630 lincRNA Interval_16518 chr10 63318099 63318913 + 0 NA TTS (ENSMUSG00000020063.16) protein_coding-TTS (ENSMUSG00000020063.16) 20526 ENSMUSG00000020063.16 ENSMUSG00000020063 ENSMUST00000131371 Sirt1 protein_coding Interval_119956 chr4 141101401 141102713 + 0 NA intron (ENSMUSG00000045004.3, intron 7 of 14) protein_coding-intron (ENSMUSG00000045004.3, intron 7 of 14) -1928 ENSMUSG00000045004.3 ENSMUSG00000045004 ENSMUST00000181353 Spata21 protein_coding Interval_6150 chr1 98086326 98087417 + 0 NA intron (ENSMUSG00000026335.16, intron 1 of 2) protein_coding-intron (ENSMUSG00000026335.16, intron 1 of 25) -28988 ENSMUSG00000026335.16 ENSMUSG00000026335 ENSMUST00000163007 Pam protein_coding Interval_106646 chr3 98057882 98058205 + 0 NA intron (ENSMUSG00000027878.11, intron 2 of 7) protein_coding-intron (ENSMUSG00000027878.11, intron 2 of 33) 27356 ENSMUSG00000105728.1 ENSMUSG00000105728 ENSMUST00000199630 Gm42819 TEC Interval_37689 chr12 71122181 71122739 + 0 NA TTS (ENSMUSG00000021079.16) protein_coding-TTS (ENSMUSG00000021079.16) 10990 ENSMUSG00000021078.5 ENSMUSG00000021078 ENSMUST00000221962 Tomm20l protein_coding Interval_41418 chr12 113625203 113625954 + 0 NA TTS (ENSMUSG00000094951.1) IG_V_gene-TTS (ENSMUSG00000094951.1) 378 ENSMUSG00000094951.1 ENSMUSG00000094951 ENSMUST00000103446 Ighv5-6 IG_V_gene Interval_153005 chr7 140810460 140811061 + 0 NA exon (ENSMUSG00000060314.13, exon 3 of 3) protein_coding-exon (ENSMUSG00000060314.13, exon 3 of 3) 11386 ENSMUSG00000060314.13 ENSMUSG00000060314 ENSMUST00000150053 Zfp941 protein_coding Interval_168690 chr9 85948387 85949312 + 0 NA Intergenic Intergenic -5649 ENSMUSG00000110946.1 ENSMUSG00000110946 ENSMUST00000213921 Gm47604 lincRNA Interval_44184 chr13 41709575 41709914 + 0 NA Intergenic Intergenic 60301 ENSMUSG00000054258.9 ENSMUSG00000054258 ENSMUST00000067176 Gm5082 lincRNA Interval_60781 chr15 76715127 76716093 + 0 NA TTS (ENSMUSG00000033728.14) protein_coding-TTS (ENSMUSG00000033728.14) 2806 ENSMUSG00000033707.9 ENSMUSG00000033707 ENSMUST00000146725 Lrrc24 protein_coding Interval_52421 chr14 45925357 45925723 + 0 NA promoter-TSS (ENSMUSG00000115382.1) processed_pseudogene-promoter-TSS (ENSMUSG00000115382.1) -394 ENSMUSG00000115382.1 ENSMUSG00000115382 ENSMUST00000226223 Gm46475 processed_pseudogene Interval_37890 chr12 72820425 72821632 + 0 NA intron (ENSMUSG00000113779.1, intron 2 of 2) lincRNA-intron (ENSMUSG00000113779.1, intron 2 of 2) 3316 ENSMUSG00000113779.1 ENSMUSG00000113779 ENSMUST00000222961 Gm33785 lincRNA Interval_73485 chr17 37929229 37930024 + 0 NA Intergenic Intergenic 9078 ENSMUSG00000059030.5 ENSMUSG00000059030 ENSMUST00000080231 Olfr128 protein_coding Interval_73073 chr17 34618919 34619470 + 0 NA intron (ENSMUSG00000015474.16, intron 6 of 7) protein_coding-intron (ENSMUSG00000015474.16, intron 7 of 8) -3874 ENSMUSG00000015467.14 ENSMUSG00000015467 ENSMUST00000168327 Egfl8 protein_coding Interval_88499 chr2 5642672 5643100 + 0 NA intron (ENSMUSG00000039145.16, intron 1 of 1) protein_coding-intron (ENSMUSG00000039145.16, intron 1 of 10) 39315 ENSMUSG00000082013.1 ENSMUSG00000082013 ENSMUST00000117145 Gm13216 processed_pseudogene Interval_118054 chr4 128654321 128655298 + 0 NA promoter-TSS (ENSMUSG00000028796.17) protein_coding-promoter-TSS (ENSMUSG00000028796.17) 17338 ENSMUSG00000084891.1 ENSMUSG00000084891 ENSMUST00000141242 Gm12958 lincRNA Interval_50687 chr14 18221588 18221998 + 0 NA intron (ENSMUSG00000021775.11, intron 2 of 4) protein_coding-intron (ENSMUSG00000021775.11, intron 2 of 7) 17218 ENSMUSG00000021775.11 ENSMUSG00000021775 ENSMUST00000143308 Nr1d2 protein_coding Interval_44392 chr13 44582347 44582902 + 0 NA Intergenic Intergenic -13956 ENSMUSG00000113977.1 ENSMUSG00000113977 ENSMUST00000222558 Gm34276 lincRNA Interval_158144 chr8 79175801 79176564 + 0 NA exon (ENSMUSG00000071064.15, exon 1 of 1) protein_coding-exon (ENSMUSG00000071064.15, exon 1 of 1) -49748 ENSMUSG00000110388.1 ENSMUSG00000110388 ENSMUST00000211572 Gm30329 antisense Interval_83152 chr18 82279023 82279627 + 0 NA Intergenic Intergenic -1960 ENSMUSG00000118279.1 ENSMUSG00000118279 ENSMUST00000237322 Gm50298 lincRNA Interval_105235 chr3 84069786 84070067 + 0 NA Intergenic Intergenic -6474 ENSMUSG00000103261.1 ENSMUSG00000103261 ENSMUST00000192340 Gm36981 TEC Interval_96806 chr2 128434259 128435421 + 0 NA intron (ENSMUSG00000114963.1, intron 1 of 7) lincRNA-intron (ENSMUSG00000074813.14, intron 2 of 2) 1117 ENSMUSG00000114963.1 ENSMUSG00000114963 ENSMUST00000224297 Gm29010 lincRNA Interval_157003 chr8 64293680 64294060 + 0 NA Intergenic Intergenic -87599 ENSMUSG00000053626.5 ENSMUSG00000053626 ENSMUST00000210256 Tll1 protein_coding Interval_65329 chr16 21613028 21613419 + 0 NA intron (ENSMUSG00000033653.18, intron 2 of 3) protein_coding-intron (ENSMUSG00000033653.18, intron 44 of 45) 80111 ENSMUSG00000033653.18 ENSMUSG00000033653 ENSMUST00000127903 Vps8 protein_coding Interval_140568 chr6 119635164 119636553 + 0 NA intron (ENSMUSG00000030172.15, intron 11 of 15) protein_coding-intron (ENSMUSG00000030172.15, intron 15 of 18) -13753 ENSMUSG00000030172.15 ENSMUSG00000030172 ENSMUST00000183741 Erc1 protein_coding Interval_86660 chr19 42373508 42375365 + 0 NA intron (ENSMUSG00000042401.8, intron 2 of 14) protein_coding-intron (ENSMUSG00000042401.8, intron 2 of 14) 4665 ENSMUSG00000117706.1 ENSMUSG00000117706 ENSMUST00000237236 Gm50184 processed_pseudogene Interval_127832 chr5 108090738 108091520 + 0 NA promoter-TSS (ENSMUSG00000029267.17) protein_coding-promoter-TSS (ENSMUSG00000029267.17) 25412 ENSMUSG00000029267.17 ENSMUSG00000029267 ENSMUST00000129921 Mtf2 protein_coding Interval_104232 chr3 61363001 61365243 + 0 NA exon (ENSMUSG00000036894.3, exon 1 of 1) protein_coding-exon (ENSMUSG00000036894.3, exon 1 of 1) 1829 ENSMUSG00000053706.2 ENSMUSG00000053706 ENSMUST00000066298 B430305J03Rik protein_coding Interval_35964 chr12 32897330 32898080 + 0 NA Intergenic Intergenic 19400 ENSMUSG00000112166.1 ENSMUSG00000112166 ENSMUST00000219636 Gm47948 lincRNA Interval_21367 chr10 128185550 128188756 + 0 NA Intergenic Intergenic -3376 ENSMUSG00000112553.1 ENSMUSG00000112553 ENSMUST00000217808 Gm4556 processed_pseudogene Interval_96418 chr2 122341492 122342489 + 0 NA intron (ENSMUSG00000033268.8, intron 27 of 32) protein_coding-intron (ENSMUSG00000033268.8, intron 27 of 32) 26318 ENSMUSG00000033268.8 ENSMUSG00000033268 ENSMUST00000099461 Duox1 protein_coding Interval_38291 chr12 76944583 76945971 + 0 NA intron (ENSMUSG00000059436.13, intron 2 of 3) protein_coding-intron (ENSMUSG00000059436.13, intron 2 of 3) -3484 ENSMUSG00000112008.1 ENSMUSG00000112008 ENSMUST00000218256 Gm47218 TEC Interval_159147 chr8 91077631 91078068 + 0 NA intron (ENSMUSG00000031666.15, intron 3 of 20) protein_coding-intron (ENSMUSG00000031666.15, intron 3 of 21) 7727 ENSMUSG00000031666.15 ENSMUSG00000031666 ENSMUST00000126689 Rbl2 protein_coding Interval_29451 chr11 84079980 84080724 + 0 NA intron (ENSMUSG00000018651.14, intron 2 of 2) protein_coding-intron (ENSMUSG00000018651.14, intron 15 of 15) 2604 ENSMUSG00000018651.14 ENSMUSG00000018651 ENSMUST00000134994 Tada2a protein_coding Interval_122260 chr5 20762375 20762959 + 0 NA intron (ENSMUSG00000039987.15, intron 5 of 6) protein_coding-intron (ENSMUSG00000039987.15, intron 16 of 17) 34273 ENSMUSG00000105036.1 ENSMUSG00000105036 ENSMUST00000200372 1110060G06Rik TEC Interval_165260 chr9 45839920 45840163 + 0 NA exon (ENSMUSG00000032086.12, exon 1 of 3) protein_coding-exon (ENSMUSG00000032086.12, exon 1 of 3) -3106 ENSMUSG00000098194.1 ENSMUSG00000098194 ENSMUST00000182691 Gm7286 processed_pseudogene Interval_117967 chr4 127370406 127371086 + 0 NA Intergenic Intergenic -12565 ENSMUSG00000042357.2 ENSMUSG00000042357 ENSMUST00000046498 Gjb5 protein_coding Interval_5128 chr1 85886449 85888120 + 0 NA Intergenic Intergenic -7335 ENSMUSG00000026223.15 ENSMUSG00000026223 ENSMUST00000139837 Itm2c protein_coding Interval_102195 chr3 19339147 19339358 + 0 NA Intergenic Intergenic 8479 ENSMUSG00000089149.1 ENSMUSG00000089149 ENSMUST00000158524 Gm22282 misc_RNA Interval_61743 chr15 83749039 83750181 + 0 NA Intergenic Intergenic -42404 ENSMUSG00000041708.12 ENSMUSG00000041708 ENSMUST00000148868 Mpped1 protein_coding Interval_158837 chr8 87037577 87038634 + 0 NA Intergenic Intergenic -9584 ENSMUSG00000066362.5 ENSMUSG00000066362 ENSMUST00000183478 Rps13-ps1 processed_pseudogene Interval_148575 chr7 82777525 82778213 + 0 NA TTS (ENSMUSG00000038563.14) protein_coding-TTS (ENSMUSG00000038563.14) -22225 ENSMUSG00000086690.1 ENSMUSG00000086690 ENSMUST00000144828 4933406J10Rik antisense Interval_157339 chr8 69653999 69655339 + 0 NA intron (ENSMUSG00000091764.3, intron 1 of 3) protein_coding-intron (ENSMUSG00000091764.3, intron 1 of 2) 177 ENSMUSG00000091764.3 ENSMUSG00000091764 ENSMUST00000169125 Zfp964 protein_coding Interval_112995 chr4 46677952 46678261 + 0 NA intron (ENSMUSG00000039809.10, intron 3 of 3) protein_coding-intron (ENSMUSG00000039809.10, intron 15 of 18) -27897 ENSMUSG00000039813.14 ENSMUSG00000039813 ENSMUST00000107750 Tbc1d2 protein_coding Interval_65304 chr16 21381315 21383314 + 0 NA Intergenic Intergenic -49185 ENSMUSG00000116632.1 ENSMUSG00000116632 ENSMUST00000231972 Magef1 transcribed_processed_pseudogene Interval_36387 chr12 43133810 43134037 + 0 NA Intergenic Intergenic -118464 ENSMUSG00000112407.1 ENSMUSG00000112407 ENSMUST00000219475 Gm33340 lincRNA Interval_135971 chr6 49173247 49175394 + 0 NA intron (ENSMUSG00000029814.10, intron 2 of 3) protein_coding-intron (ENSMUSG00000029814.10, intron 2 of 14) 1561 ENSMUSG00000107727.1 ENSMUSG00000107727 ENSMUST00000203553 Gm18010 processed_pseudogene Interval_101706 chr3 9053546 9054161 + 0 NA Intergenic Intergenic -6361 ENSMUSG00000103461.1 ENSMUSG00000103461 ENSMUST00000193974 Gm37616 processed_pseudogene Interval_126349 chr5 86881946 86882540 + 0 NA Intergenic Intergenic -18737 ENSMUSG00000105309.1 ENSMUSG00000105309 ENSMUST00000200382 Gm21461 unprocessed_pseudogene Interval_123916 chr5 36519856 36520173 + 0 NA intron (ENSMUSG00000029192.17, intron 4 of 11) protein_coding-intron (ENSMUSG00000029192.17, intron 6 of 13) -12352 ENSMUSG00000029192.17 ENSMUSG00000029192 ENSMUST00000147603 Tbc1d14 protein_coding Interval_6970 chr1 121459841 121460426 + 0 NA intron (ENSMUSG00000026339.18, intron 7 of 23) protein_coding-intron (ENSMUSG00000026339.18, intron 7 of 23) 29058 ENSMUSG00000026339.18 ENSMUSG00000026339 ENSMUST00000152959 Ccdc93 protein_coding Interval_79323 chr18 30507413 30507716 + 0 NA Intergenic Intergenic -12191 ENSMUSG00000055771.2 ENSMUSG00000055771 ENSMUST00000069529 Gm7936 processed_pseudogene Interval_82742 chr18 76335820 76336177 + 0 NA Intergenic Intergenic 14174 ENSMUSG00000117816.1 ENSMUSG00000117816 ENSMUST00000235901 Gm50360 processed_pseudogene Interval_122324 chr5 21315080 21315296 + 0 NA TTS (ENSMUSG00000039934.12) protein_coding-TTS (ENSMUSG00000039934.12) 15931 ENSMUSG00000064280.14 ENSMUSG00000064280 ENSMUST00000132473 Ccdc146 protein_coding Interval_50703 chr14 18355679 18356206 + 0 NA Intergenic Intergenic -24198 ENSMUSG00000021774.13 ENSMUSG00000021774 ENSMUST00000161580 Ube2e1 protein_coding Interval_31473 chr11 100888640 100889441 + 0 NA TTS (ENSMUSG00000004040.16) protein_coding-TTS (ENSMUSG00000004040.16) 10267 ENSMUSG00000004040.16 ENSMUSG00000004040 ENSMUST00000130686 Stat3 protein_coding Interval_168680 chr9 85781447 85781710 + 0 NA TTS (ENSMUSG00000099980.1) processed_pseudogene-TTS (ENSMUSG00000099980.1) 1049 ENSMUSG00000099980.1 ENSMUSG00000099980 ENSMUST00000071172 Gm5619 processed_pseudogene Interval_67909 chr16 59420270 59421112 + 0 NA intron (ENSMUSG00000074991.5, intron 2 of 8) protein_coding-intron (ENSMUSG00000074991.5, intron 2 of 8) 13359 ENSMUSG00000074991.5 ENSMUSG00000074991 ENSMUST00000114341 Gabrr3 protein_coding Interval_7769 chr1 133536431 133536876 + 0 NA Intergenic Intergenic 7174 ENSMUSG00000101004.1 ENSMUSG00000101004 ENSMUST00000188004 Gm8596 processed_pseudogene Interval_137838 chr6 82860740 82860965 + 0 NA Intergenic Intergenic 20980 ENSMUSG00000100291.6 ENSMUSG00000100291 ENSMUST00000191170 2310069B03Rik lincRNA Interval_81200 chr18 56369491 56369743 + 0 NA Intergenic Intergenic -20526 ENSMUSG00000117688.1 ENSMUSG00000117688 ENSMUST00000235993 Gm8629 processed_pseudogene Interval_32702 chr11 109834174 109834541 + 0 NA Intergenic Intergenic -11521 ENSMUSG00000087393.1 ENSMUSG00000087393 ENSMUST00000143247 1700023C21Rik lincRNA Interval_27432 chr11 67649935 67650514 + 0 NA intron (ENSMUSG00000033066.16, intron 4 of 7) protein_coding-intron (ENSMUSG00000033066.16, intron 5 of 14) -45102 ENSMUSG00000020907.1 ENSMUSG00000020907 ENSMUST00000021290 Rcvrn protein_coding Interval_37331 chr12 65159422 65159829 + 0 NA intron (ENSMUSG00000047534.17, intron 1 of 5) protein_coding-intron (ENSMUSG00000047534.17, intron 2 of 13) 12973 ENSMUSG00000047534.17 ENSMUSG00000047534 ENSMUST00000131753 Mis18bp1 protein_coding Interval_65355 chr16 21806880 21808489 + 0 NA intron (ENSMUSG00000097290.9, intron 3 of 3) lincRNA-intron (ENSMUSG00000097290.9, intron 2 of 2) 13350 ENSMUSG00000097290.9 ENSMUSG00000097290 ENSMUST00000180830 1300002E11Rik lincRNA Interval_101840 chr3 9867565 9868088 + 0 NA Intergenic Intergenic -31604 ENSMUSG00000102795.1 ENSMUSG00000102795 ENSMUST00000193785 Gm6236 processed_pseudogene Interval_122861 chr5 26407705 26408085 + 0 NA Intergenic Intergenic 52477 ENSMUSG00000105786.1 ENSMUSG00000105786 ENSMUST00000197623 Gm18957 processed_pseudogene Interval_94743 chr2 93926056 93926519 + 0 NA Intergenic Intergenic 14591 ENSMUSG00000083009.1 ENSMUSG00000083009 ENSMUST00000121653 Gm1335 processed_pseudogene Interval_101972 chr3 13982186 13983327 + 0 NA intron (ENSMUSG00000039717.16, intron 1 of 6) protein_coding-intron (ENSMUSG00000039717.16, intron 1 of 7) 47006 ENSMUSG00000084684.1 ENSMUSG00000084684 ENSMUST00000122735 Gm22026 misc_RNA Interval_86867 chr19 44483394 44483690 + 0 NA Intergenic Intergenic -26779 ENSMUSG00000036961.5 ENSMUSG00000036961 ENSMUST00000237970 Wnt8b protein_coding Interval_3954 chr1 65050724 65052438 + 0 NA promoter-TSS (ENSMUSG00000070870.6) protein_coding-promoter-TSS (ENSMUSG00000070870.6) -462 ENSMUSG00000070870.6 ENSMUSG00000070870 ENSMUST00000161960 Cryge protein_coding Interval_103633 chr3 51317596 51318221 + 0 NA intron (ENSMUSG00000037174.18, intron 1 of 3) protein_coding-intron (ENSMUSG00000037174.18, intron 3 of 9) -15005 ENSMUSG00000104200.1 ENSMUSG00000104200 ENSMUST00000195224 Gm37399 TEC Interval_26217 chr11 55164888 55165192 + 0 NA intron (ENSMUSG00000020264.5, intron 7 of 9) protein_coding-intron (ENSMUSG00000020264.5, intron 7 of 9) -13354 ENSMUSG00000049491.15 ENSMUSG00000049491 ENSMUST00000069816 Slc36a3 protein_coding Interval_43475 chr13 31689491 31690254 + 0 NA Intergenic Intergenic 47868 ENSMUSG00000065843.1 ENSMUSG00000065843 ENSMUST00000083909 Gm25186 snRNA Interval_94193 chr2 85001759 85003001 + 0 NA intron (ENSMUSG00000027071.14, intron 7 of 10) protein_coding-intron (ENSMUSG00000027071.14, intron 8 of 11) 14165 ENSMUSG00000027072.13 ENSMUSG00000027072 ENSMUST00000028466 Prg3 protein_coding Interval_18223 chr10 83822490 83822720 + 0 NA Intergenic Intergenic -11040 ENSMUSG00000112077.1 ENSMUSG00000112077 ENSMUST00000218819 Gm47245 processed_pseudogene Interval_100597 chr2 170354993 170355244 + 0 NA intron (ENSMUSG00000013523.13, intron 5 of 6) protein_coding-intron (ENSMUSG00000013523.13, intron 11 of 12) -1243 ENSMUSG00000086999.1 ENSMUSG00000086999 ENSMUST00000131931 Bcas1os2 antisense Interval_54936 chr14 76354815 76355620 + 0 NA Intergenic Intergenic -63611 ENSMUSG00000022010.19 ENSMUSG00000022010 ENSMUST00000133224 Tsc22d1 protein_coding Interval_799 chr1 11444030 11444319 + 0 NA intron (ENSMUSG00000057715.13, intron 1 of 1) protein_coding-intron (ENSMUSG00000057715.13, intron 1 of 13) 27256 ENSMUSG00000103825.1 ENSMUSG00000103825 ENSMUST00000194502 Gm38178 TEC Interval_127836 chr5 108104309 108104795 + 0 NA TTS (ENSMUSG00000029267.17) protein_coding-TTS (ENSMUSG00000029267.17) 27978 ENSMUSG00000063406.11 ENSMUSG00000063406 ENSMUST00000119784 Tmed5 protein_coding Interval_62550 chr15 94576960 94577297 + 0 NA TTS (ENSMUSG00000022451.12) protein_coding-TTS (ENSMUSG00000022451.12) 8347 ENSMUSG00000022451.12 ENSMUSG00000022451 ENSMUST00000152590 Twf1 protein_coding Interval_54325 chr14 67690643 67690861 + 0 NA intron (ENSMUSG00000048922.18, intron 13 of 14) protein_coding-intron (ENSMUSG00000048922.18, intron 3 of 4) -15646 ENSMUSG00000093726.1 ENSMUSG00000093726 ENSMUST00000175674 Gm20667 sense_overlapping Interval_91947 chr2 51934482 51935318 + 0 NA promoter-TSS (ENSMUSG00000036249.16) protein_coding-promoter-TSS (ENSMUSG00000036249.16) -256 ENSMUSG00000036249.16 ENSMUSG00000036249 ENSMUST00000132703 Rbm43 protein_coding Interval_99641 chr2 163853351 163854255 + 0 NA promoter-TSS (ENSMUSG00000035238.4) protein_coding-promoter-TSS (ENSMUSG00000035238.4) 70 ENSMUSG00000035238.4 ENSMUSG00000035238 ENSMUST00000109396 Kcnk15 protein_coding Interval_106962 chr3 102203507 102205611 + 0 NA promoter-TSS (ENSMUSG00000027860.15) protein_coding-promoter-TSS (ENSMUSG00000027860.15) -596 ENSMUSG00000027860.15 ENSMUSG00000027860 ENSMUST00000161722 Vangl1 protein_coding Interval_174124 chrX 135817518 135817885 + 0 NA intron (ENSMUSG00000072964.14, intron 1 of 10) protein_coding-intron (ENSMUSG00000072964.14, intron 1 of 10) 20107 ENSMUSG00000072964.14 ENSMUSG00000072964 ENSMUST00000151989 Bhlhb9 protein_coding Interval_118122 chr4 129082114 129083150 + 0 NA intron (ENSMUSG00000028793.15, intron 7 of 8) protein_coding-intron (ENSMUSG00000028793.15, intron 7 of 9) -24237 ENSMUSG00000028786.15 ENSMUSG00000028786 ENSMUST00000148979 Tmem54 protein_coding Interval_18577 chr10 88137283 88137507 + 0 NA exon (ENSMUSG00000112406.1, exon 2 of 2) antisense-exon (ENSMUSG00000112406.1, exon 2 of 2) 1476 ENSMUSG00000112406.1 ENSMUSG00000112406 ENSMUST00000218993 4921515L22Rik antisense Interval_48696 chr13 101552895 101553666 + 0 NA Intergenic Intergenic 4551 ENSMUSG00000114700.1 ENSMUSG00000114700 ENSMUST00000225873 Gm19010 processed_pseudogene Interval_101441 chr2 181429772 181430581 + 0 NA intron (ENSMUSG00000027583.13, intron 1 of 1) protein_coding-intron (ENSMUSG00000027583.13, intron 1 of 4) -4139 ENSMUSG00000089612.1 ENSMUSG00000089612 ENSMUST00000158987 Gm22708 snRNA Interval_157771 chr8 72944281 72944494 + 0 NA intron (ENSMUSG00000004383.18, intron 7 of 15) protein_coding-intron (ENSMUSG00000004383.18, intron 6 of 14) -72125 ENSMUSG00000093140.1 ENSMUSG00000093140 ENSMUST00000175399 Mir28b miRNA Interval_142494 chr6 142858080 142859200 + 0 NA intron (ENSMUSG00000030283.7, intron 4 of 4) protein_coding-intron (ENSMUSG00000030283.7, intron 4 of 4) 44255 ENSMUSG00000072683.3 ENSMUSG00000072683 ENSMUST00000159599 Gm7457 processed_transcript Interval_39529 chr12 89383415 89383840 + 0 NA intron (ENSMUSG00000066392.12, intron 7 of 18) protein_coding-intron (ENSMUSG00000066392.12, intron 8 of 19) -47709 ENSMUSG00000080680.1 ENSMUSG00000080680 ENSMUST00000117030 Gm23989 miRNA Interval_40181 chr12 102384835 102385120 + 0 NA intron (ENSMUSG00000044456.16, intron 8 of 9) protein_coding-intron (ENSMUSG00000044456.16, intron 8 of 9) 21169 ENSMUSG00000021190.14 ENSMUSG00000021190 ENSMUST00000146499 Lgmn protein_coding Interval_110855 chr4 9015135 9016356 + 0 NA Intergenic Intergenic 74486 ENSMUSG00000083786.1 ENSMUSG00000083786 ENSMUST00000119493 Rps18-ps2 processed_pseudogene Interval_104145 chr3 59058909 59059926 + 0 NA intron (ENSMUSG00000056476.13, intron 4 of 43) protein_coding-intron (ENSMUSG00000056476.13, intron 5 of 14) 42404 ENSMUSG00000050075.8 ENSMUSG00000050075 ENSMUST00000085040 Gpr171 protein_coding Interval_131565 chr5 138155186 138156301 + 0 NA promoter-TSS (ENSMUSG00000037007.17) protein_coding-promoter-TSS (ENSMUSG00000037007.17) -2844 ENSMUSG00000037007.17 ENSMUSG00000037007 ENSMUST00000132318 Zfp113 protein_coding Interval_85793 chr19 31619421 31619674 + 0 NA intron (ENSMUSG00000052920.16, intron 1 of 17) protein_coding-intron (ENSMUSG00000052920.16, intron 1 of 17) -249234 ENSMUSG00000052595.8 ENSMUSG00000052595 ENSMUST00000225165 A1cf protein_coding Interval_21909 chr11 5140037 5140822 + 0 NA intron (ENSMUSG00000034164.17, intron 3 of 14) protein_coding-intron (ENSMUSG00000034164.17, intron 3 of 14) 11811 ENSMUSG00000034164.17 ENSMUSG00000034164 ENSMUST00000138551 Emid1 protein_coding Interval_129541 chr5 120808233 120808896 + 0 NA intron (ENSMUSG00000001166.17, intron 2 of 6) protein_coding-intron (ENSMUSG00000001166.17, intron 2 of 6) 3950 ENSMUSG00000001166.17 ENSMUSG00000001166 ENSMUST00000130045 Oas1c protein_coding Interval_130049 chr5 123906705 123907756 + 0 NA promoter-TSS (ENSMUSG00000023106.15) protein_coding-promoter-TSS (ENSMUSG00000023106.15) -45 ENSMUSG00000023106.15 ENSMUSG00000023106 ENSMUST00000166233 Denr protein_coding Interval_51469 chr14 27803548 27804381 + 0 NA intron (ENSMUSG00000040640.11, intron 1 of 4) protein_coding-intron (ENSMUSG00000040640.11, intron 3 of 15) 72253 ENSMUSG00000109849.1 ENSMUSG00000109849 ENSMUST00000211470 Gm45645 antisense Interval_108348 chr3 124609967 124610287 + 0 NA Intergenic Intergenic -20970 ENSMUSG00000106009.1 ENSMUSG00000106009 ENSMUST00000196790 Gm9379 processed_pseudogene Interval_140870 chr6 122485658 122487125 + 0 NA promoter-TSS (ENSMUSG00000040649.15) protein_coding-promoter-TSS (ENSMUSG00000040649.15) 48 ENSMUSG00000040649.15 ENSMUSG00000040649 ENSMUST00000204045 Rimklb protein_coding Interval_133411 chr6 4855302 4855953 + 0 NA Intergenic Intergenic 23400 ENSMUSG00000097630.2 ENSMUSG00000097630 ENSMUST00000180640 Gm26828 processed_pseudogene Interval_38935 chr12 83950324 83951965 + 0 NA promoter-TSS (ENSMUSG00000096953.2) antisense-promoter-TSS (ENSMUSG00000096953.2) -291 ENSMUSG00000096953.2 ENSMUSG00000096953 ENSMUST00000181399 Gm26571 antisense Interval_40573 chr12 105798679 105798922 + 0 NA promoter-TSS (ENSMUSG00000021111.15) protein_coding-promoter-TSS (ENSMUSG00000021111.15) -30267 ENSMUSG00000021111.15 ENSMUSG00000021111 ENSMUST00000172089 Papola protein_coding Interval_96022 chr2 119236554 119238257 + 0 NA promoter-TSS (ENSMUSG00000027315.13) protein_coding-promoter-TSS (ENSMUSG00000027315.13) -7540 ENSMUSG00000027317.8 ENSMUSG00000027317 ENSMUST00000110820 Ppp1r14d protein_coding Interval_82618 chr18 75464513 75465956 + 0 NA intron (ENSMUSG00000052928.9, intron 10 of 11) protein_coding-intron (ENSMUSG00000052928.9, intron 10 of 11) -49411 ENSMUSG00000097712.1 ENSMUSG00000097712 ENSMUST00000181913 Gm10532 antisense Interval_71742 chr17 25813465 25813817 + 0 NA intron (ENSMUSG00000025738.8, intron 1 of 5) protein_coding-intron (ENSMUSG00000025738.8, intron 1 of 5) -2678 ENSMUSG00000025738.8 ENSMUSG00000025738 ENSMUST00000235694 Fbxl16 protein_coding Interval_65280 chr16 21204095 21205575 + 0 NA promoter-TSS (ENSMUSG00000005958.15) protein_coding-promoter-TSS (ENSMUSG00000005958.15) -5689 ENSMUSG00000005958.15 ENSMUSG00000005958 ENSMUST00000160053 Ephb3 protein_coding Interval_108291 chr3 123366955 123367172 + 0 NA Intergenic Intergenic 19035 ENSMUSG00000028114.16 ENSMUSG00000028114 ENSMUST00000197628 Mettl14 protein_coding Interval_137844 chr6 82885741 82887164 + 0 NA Intergenic Intergenic 2257 ENSMUSG00000107401.1 ENSMUSG00000107401 ENSMUST00000204060 Gm6312 processed_pseudogene Interval_79207 chr18 25662717 25663256 + 0 NA intron (ENSMUSG00000024268.16, intron 2 of 5) protein_coding-intron (ENSMUSG00000024268.16, intron 2 of 12) -50784 ENSMUSG00000114511.1 ENSMUSG00000114511 ENSMUST00000224766 0710001A04Rik antisense Interval_41419 chr12 113661701 113661964 + 0 NA TTS (ENSMUSG00000095285.2) IG_V_gene-TTS (ENSMUSG00000095285.2) 461 ENSMUSG00000095285.2 ENSMUSG00000095285 ENSMUST00000103448 Ighv5-9 IG_V_gene Interval_19955 chr10 111492403 111493047 + 0 NA intron (ENSMUSG00000058799.16, intron 8 of 13) protein_coding-intron (ENSMUSG00000058799.16, intron 8 of 15) -8059 ENSMUSG00000111997.1 ENSMUSG00000111997 ENSMUST00000220267 Gm5176 transcribed_processed_pseudogene Interval_70809 chr17 14906706 14907888 + 0 NA intron (ENSMUSG00000046991.12, intron 17 of 24) protein_coding-intron (ENSMUSG00000046991.12, intron 16 of 22) -34668 ENSMUSG00000092577.1 ENSMUSG00000092577 ENSMUST00000172650 Gm7393 processed_pseudogene Interval_118098 chr4 128942437 128943207 + 0 NA intron (ENSMUSG00000028789.16, intron 7 of 8) protein_coding-intron (ENSMUSG00000028789.16, intron 9 of 10) 6817 ENSMUSG00000085961.1 ENSMUSG00000085961 ENSMUST00000154515 Gm15904 antisense Interval_44700 chr13 47273021 47274071 + 0 NA Intergenic Intergenic 67393 ENSMUSG00000114958.1 ENSMUSG00000114958 ENSMUST00000224746 Gm48612 lincRNA Interval_160752 chr8 111950914 111951734 + 0 NA intron (ENSMUSG00000031950.7, intron 2 of 2) protein_coding-intron (ENSMUSG00000031950.7, intron 3 of 3) 10256 ENSMUSG00000031950.7 ENSMUSG00000031950 ENSMUST00000133628 Gabarapl2 protein_coding Interval_131261 chr5 136051405 136052012 + 0 NA Intergenic Intergenic -5559 ENSMUSG00000006143.12 ENSMUSG00000006143 ENSMUST00000122979 Upk3bl protein_coding Interval_24349 chr11 32603675 32604350 + 0 NA intron (ENSMUSG00000020272.8, intron 11 of 18) protein_coding-intron (ENSMUSG00000020272.8, intron 11 of 18) 15417 ENSMUSG00000020272.8 ENSMUSG00000020272 ENSMUST00000143397 Stk10 protein_coding Interval_151940 chr7 127674721 127676107 + 0 NA intron (ENSMUSG00000030814.17, intron 4 of 4) protein_coding-intron (ENSMUSG00000030814.17, intron 4 of 4) -16521 ENSMUSG00000108801.1 ENSMUSG00000108801 ENSMUST00000205284 Gm39090 lincRNA Interval_39604 chr12 91501930 91502170 + 0 NA intron (ENSMUSG00000020963.15, intron 4 of 10) protein_coding-intron (ENSMUSG00000020963.15, intron 3 of 8) 19997 ENSMUSG00000099750.1 ENSMUSG00000099750 ENSMUST00000188341 Gm18827 processed_pseudogene Interval_110574 chr4 4061054 4062293 + 0 NA intron (ENSMUSG00000071019.11, intron 5 of 6) protein_coding-intron (ENSMUSG00000071019.11, intron 4 of 5) 15849 ENSMUSG00000071019.11 ENSMUSG00000071019 ENSMUST00000108383 Sdr16c6 protein_coding Interval_12918 chr10 8132767 8133657 + 0 NA Intergenic Intergenic -42919 ENSMUSG00000112109.1 ENSMUSG00000112109 ENSMUST00000219578 Gm30906 lincRNA Interval_150707 chr7 113635698 113636190 + 0 NA Intergenic Intergenic 31072 ENSMUSG00000089467.1 ENSMUSG00000089467 ENSMUST00000158842 Gm23700 miRNA Interval_11611 chr1 183281602 183281848 + 0 NA intron (ENSMUSG00000046836.13, intron 9 of 12) protein_coding-intron (ENSMUSG00000046836.13, intron 10 of 13) -12151 ENSMUSG00000118599.1 ENSMUSG00000118599 ENSMUST00000239174 AC122792.1 unitary_pseudogene Interval_55959 chr14 103253903 103254263 + 0 NA intron (ENSMUSG00000033004.16, intron 20 of 84) protein_coding-intron (ENSMUSG00000033004.16, intron 20 of 84) 92717 ENSMUSG00000033004.16 ENSMUSG00000033004 ENSMUST00000162537 Mycbp2 protein_coding Interval_7016 chr1 122318702 122319068 + 0 NA Intergenic Intergenic 113740 ENSMUSG00000099960.1 ENSMUSG00000099960 ENSMUST00000185679 Gm28590 lincRNA Interval_146078 chr7 43689859 43690824 + 0 NA promoter-TSS (ENSMUSG00000044737.6) protein_coding-promoter-TSS (ENSMUSG00000044737.6) -77 ENSMUSG00000044737.6 ENSMUSG00000044737 ENSMUST00000056329 Klk14 protein_coding Interval_145842 chr7 40161931 40162135 + 0 NA Intergenic Intergenic -28904 ENSMUSG00000056836.8 ENSMUSG00000056836 ENSMUST00000154478 Gm6851 processed_pseudogene Interval_23327 chr11 21430719 21431133 + 0 NA Intergenic Intergenic 20428 ENSMUSG00000084412.1 ENSMUSG00000084412 ENSMUST00000120335 Gm12044 processed_pseudogene Interval_7848 chr1 134110153 134111466 + 0 NA promoter-TSS (ENSMUSG00000026450.14) protein_coding-promoter-TSS (ENSMUSG00000026450.14) -433 ENSMUSG00000026450.14 ENSMUSG00000026450 ENSMUST00000086475 Chit1 protein_coding Interval_67626 chr16 53664710 53665088 + 0 NA Intergenic Intergenic -44832 ENSMUSG00000116629.1 ENSMUSG00000116629 ENSMUST00000231266 Gm49638 processed_pseudogene Interval_35728 chr12 28689166 28689627 + 0 NA Intergenic Intergenic 10071 ENSMUSG00000098579.1 ENSMUSG00000098579 ENSMUST00000184974 Mir6937 miRNA Interval_31480 chr11 100927468 100927951 + 0 NA intron (ENSMUSG00000004040.16, intron 1 of 23) protein_coding-intron (ENSMUSG00000004040.16, intron 1 of 23) -28402 ENSMUSG00000004040.16 ENSMUSG00000004040 ENSMUST00000130686 Stat3 protein_coding Interval_81050 chr18 53325056 53325893 + 0 NA intron (ENSMUSG00000024535.16, intron 2 of 3) protein_coding-intron (ENSMUSG00000024535.16, intron 1 of 7) 79746 ENSMUSG00000024535.16 ENSMUSG00000024535 ENSMUST00000025417 Snx24 protein_coding Interval_94856 chr2 97630106 97630457 + 0 NA exon (ENSMUSG00000050587.14, exon 3 of 3) protein_coding-exon (ENSMUSG00000050587.14, exon 3 of 3) -3229 ENSMUSG00000105133.1 ENSMUSG00000105133 ENSMUST00000199276 Gm44320 miRNA Interval_161996 chr8 124321595 124321839 + 0 NA intron (ENSMUSG00000089704.9, intron 3 of 4) protein_coding-intron (ENSMUSG00000089704.9, intron 3 of 15) 10078 ENSMUSG00000089820.1 ENSMUSG00000089820 ENSMUST00000159796 Gm15775 antisense Interval_159790 chr8 103582850 103583473 + 0 NA Intergenic Intergenic -19538 ENSMUSG00000109699.1 ENSMUSG00000109699 ENSMUST00000210549 Gm45277 lincRNA Interval_23378 chr11 22028084 22028817 + 0 NA intron (ENSMUSG00000042302.14, intron 21 of 24) protein_coding-intron (ENSMUSG00000042302.14, intron 20 of 23) -26740 ENSMUSG00000005917.15 ENSMUSG00000005917 ENSMUST00000147486 Otx1 protein_coding Interval_47357 chr13 81801040 81801232 + 0 NA Intergenic Intergenic 16749 ENSMUSG00000021537.9 ENSMUSG00000021537 ENSMUST00000224168 Cetn3 protein_coding Interval_32309 chr11 106817028 106817407 + 0 NA promoter-TSS (ENSMUSG00000018372.13) protein_coding-promoter-TSS (ENSMUSG00000018372.13) -617 ENSMUSG00000018372.13 ENSMUSG00000018372 ENSMUST00000124898 Cep95 protein_coding Interval_138050 chr6 84688134 84688588 + 0 NA intron (ENSMUSG00000033769.16, intron 20 of 21) protein_coding-intron (ENSMUSG00000033769.16, intron 20 of 21) -100681 ENSMUSG00000063415.12 ENSMUSG00000063415 ENSMUST00000204109 Cyp26b1 protein_coding Interval_84252 chr19 9027241 9028544 + 0 NA intron (ENSMUSG00000069833.13, intron 4 of 6) protein_coding-intron (ENSMUSG00000069833.13, intron 4 of 5) 38608 ENSMUSG00000069833.13 ENSMUSG00000069833 ENSMUST00000237033 Ahnak protein_coding Interval_140542 chr6 119406747 119408732 + 0 NA intron (ENSMUSG00000030168.13, intron 1 of 3) protein_coding-intron (ENSMUSG00000030168.13, intron 1 of 7) 9736 ENSMUSG00000030168.13 ENSMUSG00000030168 ENSMUST00000189710 Adipor2 protein_coding Interval_85040 chr19 21741820 21742743 + 0 NA Intergenic Intergenic 13011 ENSMUSG00000118055.1 ENSMUSG00000118055 ENSMUST00000235761 Gm50129 processed_pseudogene Interval_105344 chr3 85203758 85204124 + 0 NA intron (ENSMUSG00000102805.5, intron 3 of 9) protein_coding-intron (ENSMUSG00000102805.5, intron 3 of 9) -7494 ENSMUSG00000102703.1 ENSMUSG00000102703 ENSMUST00000191953 Gm38313 TEC Interval_157203 chr8 67749752 67750035 + 0 NA intron (ENSMUSG00000030465.19, intron 12 of 16) protein_coding-intron (ENSMUSG00000030465.19, intron 10 of 14) -120787 ENSMUSG00000104757.1 ENSMUSG00000104757 ENSMUST00000198490 Gm44391 miRNA Interval_83220 chr18 82833135 82835355 + 0 NA Intergenic Intergenic -21649 ENSMUSG00000097738.2 ENSMUSG00000097738 ENSMUST00000180631 4930445N18Rik lincRNA Interval_81105 chr18 53915289 53915519 + 0 NA intron (ENSMUSG00000073563.3, intron 4 of 12) protein_coding-intron (ENSMUSG00000073563.3, intron 4 of 12) 53216 ENSMUSG00000073563.3 ENSMUSG00000073563 ENSMUST00000236399 Csnk1g3 protein_coding Interval_107226 chr3 104758155 104759021 + 0 NA intron (ENSMUSG00000105195.1, intron 2 of 2) processed_transcript-intron (ENSMUSG00000105195.1, intron 2 of 2) -5423 ENSMUSG00000089999.1 ENSMUSG00000089999 ENSMUST00000160676 Gm6485 transcribed_processed_pseudogene Interval_94164 chr2 84782845 84783080 + 0 NA Intergenic Intergenic -7834 ENSMUSG00000023224.12 ENSMUSG00000023224 ENSMUST00000131456 Serping1 protein_coding Interval_165531 chr9 49060653 49060894 + 0 NA intron (ENSMUSG00000032264.9, intron 3 of 4) protein_coding-intron (ENSMUSG00000032264.9, intron 3 of 15) 4991 ENSMUSG00000032264.9 ENSMUSG00000032264 ENSMUST00000213787 Zw10 protein_coding Interval_121025 chr4 152290145 152291225 + 0 NA intron (ENSMUSG00000028946.7, intron 1 of 4) protein_coding-intron (ENSMUSG00000028946.7, intron 1 of 4) -2080 ENSMUSG00000028946.7 ENSMUSG00000028946 ENSMUST00000218045 Hes3 protein_coding Interval_142389 chr6 141362897 141364615 + 0 NA intron (ENSMUSG00000041741.10, intron 1 of 5) protein_coding-intron (ENSMUSG00000041741.10, intron 1 of 15) 23203 ENSMUSG00000107456.1 ENSMUSG00000107456 ENSMUST00000203920 Gm10400 TEC Interval_32740 chr11 110264931 110266978 + 0 NA Intergenic Intergenic -14178 ENSMUSG00000044749.13 ENSMUSG00000044749 ENSMUST00000150988 Abca6 protein_coding Interval_101789 chr3 9568135 9568732 + 0 NA intron (ENSMUSG00000040209.12, intron 1 of 8) protein_coding-intron (ENSMUSG00000040209.12, intron 1 of 8) -3134 ENSMUSG00000040209.12 ENSMUSG00000040209 ENSMUST00000192832 Zfp704 protein_coding Interval_100744 chr2 172289313 172289791 + 0 NA intron (ENSMUSG00000085949.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000085949.1, intron 1 of 1) 1419 ENSMUSG00000085949.1 ENSMUSG00000085949 ENSMUST00000152112 Gm14275 lincRNA Interval_78314 chr18 11917561 11918948 + 0 NA intron (ENSMUSG00000040957.15, intron 4 of 9) protein_coding-intron (ENSMUSG00000040957.15, intron 3 of 8) 5123 ENSMUSG00000117430.1 ENSMUSG00000117430 ENSMUST00000234828 Gm49968 TEC Interval_35314 chr12 20451183 20452039 + 0 NA promoter-TSS (ENSMUSG00000116537.1) lincRNA-promoter-TSS (ENSMUSG00000116537.1) -64 ENSMUSG00000116537.1 ENSMUSG00000116537 ENSMUST00000232443 Gm49698 lincRNA Interval_29700 chr11 86216433 86216646 + 0 NA intron (ENSMUSG00000018068.13, intron 19 of 23) protein_coding-intron (ENSMUSG00000018068.13, intron 20 of 24) 15156 ENSMUSG00000085208.3 ENSMUSG00000085208 ENSMUST00000143819 Brip1os antisense Interval_97177 chr2 132040240 132040598 + 0 NA Intergenic Intergenic -19246 ENSMUSG00000027339.15 ENSMUSG00000027339 ENSMUST00000140791 Rassf2 protein_coding Interval_54817 chr14 75445389 75446070 + 0 NA Intergenic Intergenic -10253 ENSMUSG00000091722.2 ENSMUSG00000091722 ENSMUST00000164848 Siah3 protein_coding Interval_161747 chr8 122517244 122517879 + 0 NA intron (ENSMUSG00000014444.17, intron 1 of 50) protein_coding-intron (ENSMUSG00000014444.17, intron 1 of 50) 3113 ENSMUSG00000065080.1 ENSMUSG00000065080 ENSMUST00000083146 Gm26497 snRNA Interval_165679 chr9 50883012 50883519 + 0 NA intron (ENSMUSG00000032058.14, intron 14 of 15) protein_coding-intron (ENSMUSG00000032058.14, intron 14 of 16) -4685 ENSMUSG00000088708.1 ENSMUSG00000088708 ENSMUST00000158083 Gm25558 snRNA Interval_122487 chr5 23405861 23406276 + 0 NA intron (ENSMUSG00000073147.3, intron 2 of 4) lincRNA-intron (ENSMUSG00000073147.3, intron 1 of 6) 9965 ENSMUSG00000105042.1 ENSMUSG00000105042 ENSMUST00000197390 Gm42509 TEC Interval_82292 chr18 70282399 70282873 + 0 NA Intergenic Intergenic -6336 ENSMUSG00000118497.1 ENSMUSG00000118497 ENSMUST00000239144 AC124764.1 protein_coding Interval_29677 chr11 85986309 85986792 + 0 NA Intergenic Intergenic 36055 ENSMUSG00000081632.1 ENSMUSG00000081632 ENSMUST00000118790 Gm11443 processed_pseudogene Interval_152000 chr7 128114939 128115718 + 0 NA intron (ENSMUSG00000030786.18, intron 24 of 28) protein_coding-intron (ENSMUSG00000030786.18, intron 24 of 29) -1108 ENSMUSG00000108596.1 ENSMUSG00000108596 ENSMUST00000134694 Gm49368 protein_coding Interval_105570 chr3 87816394 87817059 + 0 NA TTS (ENSMUSG00000005640.11) protein_coding-TTS (ENSMUSG00000005640.11) 14783 ENSMUSG00000005640.11 ENSMUSG00000005640 ENSMUST00000166866 Insrr protein_coding Interval_122770 chr5 25273214 25273455 + 0 NA TTS (ENSMUSG00000038056.15) protein_coding-TTS (ENSMUSG00000038056.15) 26741 ENSMUSG00000038056.15 ENSMUSG00000038056 ENSMUST00000172626 Kmt2c protein_coding Interval_126109 chr5 77459524 77460752 + 0 NA intron (ENSMUSG00000106906.1, intron 3 of 4) lincRNA-intron (ENSMUSG00000106906.1, intron 3 of 4) -5350 ENSMUSG00000107232.1 ENSMUSG00000107232 ENSMUST00000201654 1700017L05Rik lincRNA Interval_38880 chr12 83577640 83579879 + 0 NA intron (ENSMUSG00000042628.8, intron 3 of 12) protein_coding-intron (ENSMUSG00000042628.8, intron 2 of 11) 18063 ENSMUSG00000042628.8 ENSMUSG00000042628 ENSMUST00000223380 Zfyve1 protein_coding Interval_17052 chr10 70877821 70879169 + 0 NA intron (ENSMUSG00000047692.6, intron 3 of 5) antisense-intron (ENSMUSG00000047692.6, intron 3 of 6) -3609 ENSMUSG00000094703.1 ENSMUSG00000094703 ENSMUST00000178420 Gm24486 snRNA Interval_101906 chr3 10789498 10791459 + 0 NA Intergenic Intergenic -15579 ENSMUSG00000102470.1 ENSMUSG00000102470 ENSMUST00000191748 Gm37244 TEC Interval_15148 chr10 42908195 42908780 + 0 NA intron (ENSMUSG00000044770.14, intron 2 of 5) protein_coding-intron (ENSMUSG00000044770.14, intron 2 of 8) -19690 ENSMUSG00000111086.1 ENSMUSG00000111086 ENSMUST00000214070 Gm48671 lincRNA Interval_119333 chr4 136916268 136916890 + 0 NA Intergenic Intergenic -17776 ENSMUSG00000036887.5 ENSMUSG00000036887 ENSMUST00000046285 C1qa protein_coding Interval_127374 chr5 103555580 103555773 + 0 NA intron (ENSMUSG00000034573.14, intron 24 of 47) protein_coding-intron (ENSMUSG00000034573.14, intron 24 of 47) -22655 ENSMUSG00000104580.1 ENSMUSG00000104580 ENSMUST00000197715 Gm42620 antisense Interval_126179 chr5 81589767 81591843 + 0 NA intron (ENSMUSG00000037605.16, intron 9 of 12) protein_coding-intron (ENSMUSG00000037605.16, intron 7 of 24) 55079 ENSMUSG00000107375.1 ENSMUSG00000107375 ENSMUST00000200696 Gm43084 TEC Interval_41545 chr12 116176836 116177170 + 0 NA Intergenic Intergenic 3690 ENSMUSG00000065685.1 ENSMUSG00000065685 ENSMUST00000083751 Gm23732 snRNA Interval_107170 chr3 104277241 104277685 + 0 NA Intergenic Intergenic 76353 ENSMUSG00000088479.1 ENSMUSG00000088479 ENSMUST00000157854 Gm23077 snoRNA Interval_56826 chr14 122294055 122295305 + 0 NA intron (ENSMUSG00000025545.10, intron 1 of 7) protein_coding-intron (ENSMUSG00000025545.10, intron 1 of 7) 36639 ENSMUSG00000025545.10 ENSMUSG00000025545 ENSMUST00000226136 Clybl protein_coding Interval_57154 chr15 7042261 7042489 + 0 NA Intergenic Intergenic 46338 ENSMUSG00000104334.1 ENSMUSG00000104334 ENSMUST00000192751 Gm38282 TEC Interval_128071 chr5 110694478 110694762 + 0 NA intron (ENSMUSG00000029505.17, intron 25 of 50) protein_coding-intron (ENSMUSG00000029505.17, intron 26 of 51) -2439 ENSMUSG00000077254.1 ENSMUSG00000077254 ENSMUST00000104066 Gm26079 snoRNA Interval_65857 chr16 29838869 29839848 + 0 NA Intergenic Intergenic -4630 ENSMUSG00000116891.1 ENSMUSG00000116891 ENSMUST00000232318 Gm32679 lincRNA Interval_19010 chr10 93775850 93777644 + 0 NA Intergenic Intergenic -1913 ENSMUSG00000090610.3 ENSMUSG00000090610 ENSMUST00000170703 Gm3571 processed_pseudogene Interval_154006 chr8 11820251 11820836 + 0 NA intron (ENSMUSG00000031511.16, intron 17 of 18) protein_coding-intron (ENSMUSG00000031511.16, intron 17 of 17) 19857 ENSMUSG00000086500.1 ENSMUSG00000086500 ENSMUST00000152264 Gm15875 bidirectional_promoter_lncRNA Interval_58700 chr15 37205234 37205880 + 0 NA Intergenic Intergenic -22856 ENSMUSG00000115621.1 ENSMUSG00000115621 ENSMUST00000226193 Gm8664 processed_pseudogene Interval_54922 chr14 76253959 76255924 + 0 NA Intergenic Intergenic 3484 ENSMUSG00000115625.1 ENSMUSG00000115625 ENSMUST00000227933 2900040C04Rik lincRNA Interval_65614 chr16 24174716 24176418 + 0 NA intron (ENSMUSG00000115852.2, intron 2 of 3) transcribed_processed_pseudogene-intron (ENSMUSG00000115852.2, intron 2 of 3) -7006 ENSMUSG00000116173.1 ENSMUSG00000116173 ENSMUST00000230625 Gm32126 sense_intronic Interval_15718 chr10 54619788 54620503 + 0 NA Intergenic Intergenic 51559 ENSMUSG00000112882.1 ENSMUSG00000112882 ENSMUST00000218122 Gm47970 processed_pseudogene Interval_149356 chr7 97656564 97657150 + 0 NA promoter-TSS (ENSMUSG00000035623.14) protein_coding-promoter-TSS (ENSMUSG00000035623.14) -423 ENSMUSG00000035623.14 ENSMUSG00000035623 ENSMUST00000135270 Rsf1 protein_coding Interval_12456 chr1 193617677 193618196 + 0 NA Intergenic Intergenic -107762 ENSMUSG00000097850.2 ENSMUSG00000097850 ENSMUST00000180420 Mir205hg lincRNA Interval_147631 chr7 70347838 70348076 + 0 NA promoter-TSS (ENSMUSG00000109364.1) lincRNA-promoter-TSS (ENSMUSG00000109364.1) -261 ENSMUSG00000109364.1 ENSMUSG00000109364 ENSMUST00000209050 Gm44948 lincRNA Interval_68989 chr16 89967077 89967376 + 0 NA intron (ENSMUSG00000002489.16, intron 2 of 11) protein_coding-intron (ENSMUSG00000002489.16, intron 2 of 11) -122757 ENSMUSG00000116536.1 ENSMUSG00000116536 ENSMUST00000232386 Gm2805 processed_pseudogene Interval_62371 chr15 91263496 91264655 + 0 NA Intergenic Intergenic 64581 ENSMUSG00000078932.8 ENSMUSG00000078932 ENSMUST00000109284 CN725425 protein_coding Interval_25552 chr11 49732511 49732692 + 0 NA Intergenic Intergenic 34721 ENSMUSG00000081570.1 ENSMUSG00000081570 ENSMUST00000120146 Gm12192 processed_pseudogene Interval_150425 chr7 110412089 110412356 + 0 NA intron (ENSMUSG00000038371.15, intron 17 of 18) protein_coding-intron (ENSMUSG00000038371.15, intron 16 of 40) -12815 ENSMUSG00000091117.1 ENSMUSG00000091117 ENSMUST00000163579 Gm9064 processed_pseudogene Interval_148633 chr7 83616660 83617519 + 0 NA exon (ENSMUSG00000038540.14, exon 19 of 19) protein_coding-exon (ENSMUSG00000038540.14, exon 19 of 19) 14791 ENSMUSG00000087088.2 ENSMUSG00000087088 ENSMUST00000208892 Gm16638 antisense Interval_41549 chr12 116208149 116208583 + 0 NA intron (ENSMUSG00000042050.8, intron 11 of 11) protein_coding-intron (ENSMUSG00000042050.8, intron 21 of 21) 34201 ENSMUSG00000096694.1 ENSMUSG00000096694 ENSMUST00000180307 Gm23190 miRNA Interval_108215 chr3 122510660 122511044 + 0 NA promoter-TSS (ENSMUSG00000028121.8) protein_coding-promoter-TSS (ENSMUSG00000028121.8) 30829 ENSMUSG00000104773.1 ENSMUSG00000104773 ENSMUST00000196051 Mir7657 miRNA Interval_160956 chr8 116364383 116364619 + 0 NA Intergenic Intergenic 7440 ENSMUSG00000110709.1 ENSMUSG00000110709 ENSMUST00000212522 1700018P08Rik lincRNA Interval_945 chr1 13340573 13341328 + 0 NA intron (ENSMUSG00000005886.14, intron 1 of 12) protein_coding-intron (ENSMUSG00000005886.14, intron 1 of 22) -6341 ENSMUSG00000087782.1 ENSMUSG00000087782 ENSMUST00000157157 Gm23169 snRNA Interval_65695 chr16 25516408 25518254 + 0 NA Intergenic Intergenic -74058 ENSMUSG00000116828.1 ENSMUSG00000116828 ENSMUST00000232460 Gm18896 processed_pseudogene Interval_84808 chr19 16901499 16902129 + 0 NA intron (ENSMUSG00000118126.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000118126.1, intron 1 of 1) -17519 ENSMUSG00000118126.1 ENSMUSG00000118126 ENSMUST00000236072 Gm32341 lincRNA Interval_163013 chr9 14529970 14530454 + 0 NA Intergenic Intergenic -4451 ENSMUSG00000111612.1 ENSMUSG00000111612 ENSMUST00000213361 Gm47090 processed_pseudogene Interval_3518 chr1 59256385 59257179 + 0 NA promoter-TSS (ENSMUSG00000026023.16) protein_coding-promoter-TSS (ENSMUSG00000026023.16) -37656 ENSMUSG00000026024.14 ENSMUSG00000026024 ENSMUST00000188469 Als2 protein_coding Interval_89481 chr2 20929714 20930745 + 0 NA intron (ENSMUSG00000085206.1, intron 1 of 1) protein_coding-intron (ENSMUSG00000036591.16, intron 2 of 25) 1160 ENSMUSG00000085206.1 ENSMUSG00000085206 ENSMUST00000124322 Gm13380 sense_intronic Interval_71983 chr17 27429205 27430178 + 0 NA intron (ENSMUSG00000063239.17, intron 9 of 9) protein_coding-intron (ENSMUSG00000063239.17, intron 10 of 10) -7838 ENSMUSG00000116682.1 ENSMUSG00000116682 ENSMUST00000231804 Gm49789 TEC Interval_143683 chr7 14404020 14404221 + 0 NA Intergenic Intergenic 32327 ENSMUSG00000030378.15 ENSMUSG00000030378 ENSMUST00000209972 Sult2a8 protein_coding Interval_161982 chr8 124256545 124257079 + 0 NA intron (ENSMUSG00000089704.9, intron 1 of 4) protein_coding-intron (ENSMUSG00000089704.9, intron 1 of 15) -38554 ENSMUSG00000089704.9 ENSMUSG00000089704 ENSMUST00000147911 Galnt2 protein_coding Interval_142583 chr6 143556579 143556865 + 0 NA Intergenic Intergenic -21214 ENSMUSG00000084971.1 ENSMUSG00000084971 ENSMUST00000132321 4930579D09Rik lincRNA Interval_47627 chr13 90304579 90304914 + 0 NA Intergenic Intergenic 66574 ENSMUSG00000102756.1 ENSMUSG00000102756 ENSMUST00000193481 Gm37054 TEC Interval_107633 chr3 109046703 109047022 + 0 NA Intergenic Intergenic -8772 ENSMUSG00000105371.1 ENSMUSG00000105371 ENSMUST00000200208 Gm44384 miRNA Interval_127131 chr5 100491827 100492118 + 0 NA intron (ENSMUSG00000035310.15, intron 1 of 12) protein_coding-intron (ENSMUSG00000035310.15, intron 1 of 12) 6661 ENSMUSG00000035310.15 ENSMUSG00000035310 ENSMUST00000144716 Lin54 protein_coding Interval_4593 chr1 75327602 75329067 + 0 NA Intergenic Intergenic -10887 ENSMUSG00000026209.15 ENSMUSG00000026209 ENSMUST00000189282 Dnpep protein_coding Interval_3789 chr1 63098265 63098851 + 0 NA intron (ENSMUSG00000040865.15, intron 1 of 10) protein_coding-intron (ENSMUSG00000040865.15, intron 1 of 10) -16182 ENSMUSG00000084799.7 ENSMUSG00000084799 ENSMUST00000188602 Ino80dos lincRNA Interval_124870 chr5 58000548 58000775 + 0 NA intron (ENSMUSG00000029108.14, intron 3 of 3) protein_coding-intron (ENSMUSG00000029108.14, intron 2 of 2) 16449 ENSMUSG00000103959.2 ENSMUSG00000103959 ENSMUST00000195497 Gm37720 TEC Interval_15158 chr10 42957571 42959238 + 0 NA exon (ENSMUSG00000044770.14, exon 9 of 9) protein_coding-exon (ENSMUSG00000044770.14, exon 9 of 9) -69607 ENSMUSG00000111086.1 ENSMUSG00000111086 ENSMUST00000214070 Gm48671 lincRNA Interval_156492 chr8 48721104 48723137 + 0 NA intron (ENSMUSG00000031561.16, intron 1 of 2) protein_coding-intron (ENSMUSG00000031561.16, intron 1 of 2) -90951 ENSMUSG00000110509.1 ENSMUSG00000110509 ENSMUST00000212961 Gm45772 processed_pseudogene Interval_84066 chr19 7028997 7029210 + 0 NA intron (ENSMUSG00000024966.9, intron 6 of 13) protein_coding-intron (ENSMUSG00000024966.9, intron 6 of 13) -9758 ENSMUSG00000024965.9 ENSMUSG00000024965 ENSMUST00000238171 Fermt3 protein_coding Interval_31659 chr11 102082101 102082843 + 0 NA promoter-TSS (ENSMUSG00000017314.12) protein_coding-promoter-TSS (ENSMUSG00000017314.12) 3266 ENSMUSG00000017314.12 ENSMUSG00000017314 ENSMUST00000132687 Mpp2 protein_coding Interval_107262 chr3 105040856 105041412 + 0 NA intron (ENSMUSG00000062127.11, intron 1 of 5) protein_coding-intron (ENSMUSG00000062127.11, intron 1 of 5) 11791 ENSMUSG00000062127.11 ENSMUSG00000062127 ENSMUST00000199002 Cttnbp2nl protein_coding Interval_115208 chr4 94450562 94450855 + 0 NA Intergenic Intergenic -16224 ENSMUSG00000088295.1 ENSMUSG00000088295 ENSMUST00000157670 Gm26410 misc_RNA Interval_78038 chr18 7284686 7285390 + 0 NA intron (ENSMUSG00000061802.6, intron 7 of 20) protein_coding-intron (ENSMUSG00000061802.6, intron 7 of 20) -100965 ENSMUSG00000061802.6 ENSMUSG00000061802 ENSMUST00000234196 Armc4 protein_coding Interval_53774 chr14 61656106 61657416 + 0 NA intron (ENSMUSG00000097997.1, intron 1 of 2) processed_transcript-intron (ENSMUSG00000097589.9, intron 1 of 6) 7811 ENSMUSG00000097997.1 ENSMUSG00000097997 ENSMUST00000183031 Gm27017 lincRNA Interval_73137 chr17 35021058 35022418 + 0 NA intron (ENSMUSG00000007030.8, intron 9 of 16) protein_coding-intron (ENSMUSG00000007030.8, intron 9 of 16) 5100 ENSMUSG00000007030.8 ENSMUSG00000007030 ENSMUST00000172499 Vwa7 protein_coding Interval_170329 chr9 107146641 107146861 + 0 NA intron (ENSMUSG00000039716.12, intron 2 of 4) protein_coding-intron (ENSMUSG00000039716.12, intron 3 of 52) -18226 ENSMUSG00000077494.1 ENSMUSG00000077494 ENSMUST00000104306 Gm23595 snoRNA Interval_2795 chr1 45359493 45360071 + 0 NA Intergenic Intergenic 25582 ENSMUSG00000026043.18 ENSMUSG00000026043 ENSMUST00000186021 Col3a1 protein_coding Interval_158889 chr8 87747304 87748146 + 0 NA intron (ENSMUSG00000045333.15, intron 3 of 5) protein_coding-intron (ENSMUSG00000045333.15, intron 4 of 6) 111068 ENSMUSG00000089301.1 ENSMUSG00000089301 ENSMUST00000158676 Gm24841 misc_RNA Interval_9669 chr1 160889637 160891513 + 0 NA Intergenic Intergenic -2545 ENSMUSG00000057499.3 ENSMUSG00000057499 ENSMUST00000085589 Gm6177 processed_pseudogene Interval_143643 chr7 13673119 13673448 + 0 NA Intergenic Intergenic 19287 ENSMUSG00000099400.1 ENSMUSG00000099400 ENSMUST00000187624 Kat6b-ps1 processed_pseudogene Interval_3579 chr1 59717143 59718163 + 0 NA exon (ENSMUSG00000026020.9, exon 15 of 15) protein_coding-exon (ENSMUSG00000026020.9, exon 15 of 15) 12863 ENSMUSG00000089093.3 ENSMUSG00000089093 ENSMUST00000158468 Snord11 snoRNA Interval_83583 chr18 90195326 90196279 + 0 NA Intergenic Intergenic -33097 ENSMUSG00000089008.1 ENSMUSG00000089008 ENSMUST00000158383 Gm23859 snRNA Interval_86824 chr19 44135307 44136336 + 0 NA promoter-TSS (ENSMUSG00000025200.7) protein_coding-promoter-TSS (ENSMUSG00000025200.7) 40 ENSMUSG00000025200.7 ENSMUSG00000025200 ENSMUST00000236626 Cwf19l1 protein_coding Interval_74964 chr17 58399322 58399562 + 0 NA intron (ENSMUSG00000038048.8, intron 22 of 23) protein_coding-intron (ENSMUSG00000038048.8, intron 22 of 23) -62883 ENSMUSG00000117281.1 ENSMUSG00000117281 ENSMUST00000233462 Gm49848 processed_pseudogene Interval_113543 chr4 56113606 56114180 + 0 NA Intergenic Intergenic -49047 ENSMUSG00000081290.1 ENSMUSG00000081290 ENSMUST00000117493 Gm12520 processed_pseudogene Interval_147660 chr7 70856214 70856599 + 0 NA Intergenic Intergenic -14586 ENSMUSG00000109532.1 ENSMUSG00000109532 ENSMUST00000208057 Gm42397 lincRNA Interval_28945 chr11 79456952 79457928 + 0 NA intron (ENSMUSG00000020716.16, intron 30 of 30) protein_coding-intron (ENSMUSG00000020716.16, intron 29 of 57) -4993 ENSMUSG00000082529.1 ENSMUSG00000082529 ENSMUST00000118691 Gm11199 processed_pseudogene Interval_36134 chr12 36207200 36207577 + 0 NA TTS (ENSMUSG00000020545.14) protein_coding-TTS (ENSMUSG00000020545.14) 10830 ENSMUSG00000020545.14 ENSMUSG00000020545 ENSMUST00000222145 Lrrc72 protein_coding Interval_81715 chr18 63846697 63847353 + 0 NA intron (ENSMUSG00000040560.10, intron 19 of 19) protein_coding-intron (ENSMUSG00000040560.10, intron 20 of 27) 52006 ENSMUSG00000118258.1 ENSMUSG00000118258 ENSMUST00000237352 Gm19076 processed_pseudogene Interval_73271 chr17 35908849 35910570 + 0 NA promoter-TSS (ENSMUSG00000024426.17) protein_coding-promoter-TSS (ENSMUSG00000024426.17) 300 ENSMUSG00000024426.17 ENSMUSG00000024426 ENSMUST00000174436 Atat1 protein_coding Interval_101069 chr2 174900549 174901809 + 0 NA Intergenic Intergenic 44890 ENSMUSG00000086177.1 ENSMUSG00000086177 ENSMUST00000131690 Gm14616 lincRNA Interval_46940 chr13 73591710 73591946 + 0 NA Intergenic Intergenic -24976 ENSMUSG00000021610.8 ENSMUSG00000021610 ENSMUST00000221130 Clptm1l protein_coding Interval_26367 chr11 57406354 57407848 + 0 NA Intergenic Intergenic -42006 ENSMUSG00000082476.1 ENSMUSG00000082476 ENSMUST00000118824 Gm12242 processed_pseudogene Interval_131034 chr5 134675827 134676844 + 0 NA promoter-TSS (ENSMUSG00000072573.2) antisense-promoter-TSS (ENSMUSG00000072573.2) -155 ENSMUSG00000072573.2 ENSMUSG00000072573 ENSMUST00000100641 Gm10369 antisense Interval_61288 chr15 80586002 80586935 + 0 NA intron (ENSMUSG00000042351.9, intron 1 of 7) protein_coding-intron (ENSMUSG00000042351.9, intron 1 of 7) -21312 ENSMUSG00000050439.7 ENSMUSG00000050439 ENSMUST00000229110 Enthd1 protein_coding Interval_133863 chr6 13670963 13671153 + 0 NA intron (ENSMUSG00000042742.7, intron 1 of 3) protein_coding-intron (ENSMUSG00000042742.7, intron 1 of 4) 6880 ENSMUSG00000042742.7 ENSMUSG00000042742 ENSMUST00000203078 Bmt2 protein_coding Interval_56982 chr14 124674765 124676133 + 0 NA intron (ENSMUSG00000025551.13, intron 1 of 4) protein_coding-intron (ENSMUSG00000025551.13, intron 1 of 4) 1678 ENSMUSG00000025551.13 ENSMUSG00000025551 ENSMUST00000026631 Fgf14 protein_coding Interval_106428 chr3 96155566 96156114 + 0 NA exon (ENSMUSG00000038495.14, exon 12 of 12) protein_coding-exon (ENSMUSG00000038495.14, exon 12 of 12) -14746 ENSMUSG00000045934.15 ENSMUSG00000045934 ENSMUST00000196004 Mtmr11 protein_coding Interval_158488 chr8 84009978 84012679 + 0 NA promoter-TSS (ENSMUSG00000074217.8) protein_coding-promoter-TSS (ENSMUSG00000074217.8) 305 ENSMUSG00000080665.1 ENSMUSG00000080665 ENSMUST00000117015 Mir1199 miRNA Interval_37619 chr12 70430954 70431444 + 0 NA Intergenic Intergenic -24839 ENSMUSG00000021072.12 ENSMUSG00000021072 ENSMUST00000160865 Tmx1 protein_coding Interval_141852 chr6 134936007 134936380 + 0 NA intron (ENSMUSG00000098318.7, intron 1 of 1) lincRNA-intron (ENSMUSG00000098318.7, intron 1 of 1) -6081 ENSMUSG00000107730.1 ENSMUSG00000107730 ENSMUST00000203300 Gm44238 lincRNA Interval_78967 chr18 23323456 23323838 + 0 NA Intergenic Intergenic 106978 ENSMUSG00000117475.1 ENSMUSG00000117475 ENSMUST00000234562 Gm7788 processed_pseudogene Interval_91246 chr2 36322057 36323602 + 0 NA promoter-TSS (ENSMUSG00000082583.2) unprocessed_pseudogene-promoter-TSS (ENSMUSG00000082583.2) -495 ENSMUSG00000082583.2 ENSMUSG00000082583 ENSMUST00000120897 Olfr336-ps1 unprocessed_pseudogene Interval_8741 chr1 150307549 150308663 + 0 NA Intergenic Intergenic -11311 ENSMUSG00000006007.14 ENSMUSG00000006007 ENSMUST00000185698 Pdc protein_coding Interval_147585 chr7 68571082 68571770 + 0 NA Intergenic Intergenic 27428 ENSMUSG00000109375.1 ENSMUSG00000109375 ENSMUST00000208980 Gm44887 processed_pseudogene Interval_25181 chr11 44832466 44834342 + 0 NA intron (ENSMUSG00000057098.14, intron 6 of 15) protein_coding-intron (ENSMUSG00000057098.14, intron 6 of 15) -170728 ENSMUSG00000085784.1 ENSMUSG00000085784 ENSMUST00000130493 Gm12158 antisense Interval_60054 chr15 64278946 64279550 + 0 NA intron (ENSMUSG00000022377.16, intron 2 of 4) protein_coding-intron (ENSMUSG00000022377.16, intron 3 of 30) -35249 ENSMUSG00000115752.1 ENSMUSG00000115752 ENSMUST00000226773 1700010G06Rik antisense Interval_89018 chr2 14590111 14590368 + 0 NA Intergenic Intergenic 14372 ENSMUSG00000075525.3 ENSMUSG00000075525 ENSMUST00000100397 Gm10849 pseudogene Interval_132771 chr5 147764134 147764362 + 0 NA Intergenic Intergenic 18732 ENSMUSG00000106845.1 ENSMUSG00000106845 ENSMUST00000202338 Gm43156 lincRNA Interval_37415 chr12 67860943 67862671 + 0 NA Intergenic Intergenic -39411 ENSMUSG00000114128.1 ENSMUSG00000114128 ENSMUST00000222060 Gm47452 processed_pseudogene Interval_90059 chr2 27613412 27614370 + 0 NA Intergenic Intergenic 73465 ENSMUSG00000085929.1 ENSMUSG00000085929 ENSMUST00000132898 Gm13421 processed_transcript Interval_50034 chr13 119871466 119873299 + 0 NA exon (ENSMUSG00000103877.2, exon 2 of 3) processed_pseudogene-exon (ENSMUSG00000103877.2, exon 2 of 3) 693 ENSMUSG00000103877.2 ENSMUSG00000103877 ENSMUST00000191645 Gm21358 processed_pseudogene Interval_154183 chr8 13253740 13254465 + 0 NA promoter-TSS (ENSMUSG00000031448.12) protein_coding-promoter-TSS (ENSMUSG00000031448.12) 60 ENSMUSG00000031448.12 ENSMUSG00000031448 ENSMUST00000171619 Adprhl1 protein_coding Interval_31516 chr11 101126725 101127664 + 0 NA TTS (ENSMUSG00000035198.9) protein_coding-TTS (ENSMUSG00000035198.9) 2694 ENSMUSG00000035198.9 ENSMUSG00000035198 ENSMUST00000137844 Tubg1 protein_coding Interval_94087 chr2 83744752 83745089 + 0 NA exon (ENSMUSG00000081801.1, exon 1 of 1) processed_pseudogene-exon (ENSMUSG00000081801.1, exon 1 of 1) 816 ENSMUSG00000081801.1 ENSMUSG00000081801 ENSMUST00000118734 Dnmt3l-ps1 processed_pseudogene Interval_102622 chr3 28577196 28577845 + 0 NA exon (ENSMUSG00000027692.16, exon 12 of 31) protein_coding-exon (ENSMUSG00000027692.16, exon 12 of 31) -143997 ENSMUSG00000027690.13 ENSMUSG00000027690 ENSMUST00000169047 Slc2a2 protein_coding Interval_112473 chr4 41464446 41465562 + 0 NA promoter-TSS (ENSMUSG00000028438.16) protein_coding-promoter-TSS (ENSMUSG00000028438.16) -147 ENSMUSG00000028443.6 ENSMUSG00000028443 ENSMUST00000030154 Nudt2 protein_coding Interval_69202 chr16 91310237 91311065 + 0 NA TTS (ENSMUSG00000085865.2) lincRNA-TTS (ENSMUSG00000085865.2) 18346 ENSMUSG00000085865.2 ENSMUSG00000085865 ENSMUST00000146994 Gm15966 lincRNA Interval_97615 chr2 140668423 140668612 + 0 NA intron (ENSMUSG00000051379.12, intron 1 of 3) protein_coding-intron (ENSMUSG00000051379.12, intron 1 of 2) 2933 ENSMUSG00000051379.12 ENSMUSG00000051379 ENSMUST00000056760 Flrt3 protein_coding Interval_98452 chr2 152471171 152472059 + 0 NA Intergenic Intergenic 4221 ENSMUSG00000082689.1 ENSMUSG00000082689 ENSMUST00000121538 Gm14156 processed_pseudogene Interval_51614 chr14 30733542 30733785 + 0 NA intron (ENSMUSG00000006527.16, intron 1 of 20) protein_coding-intron (ENSMUSG00000006527.16, intron 1 of 20) 17172 ENSMUSG00000006527.16 ENSMUSG00000006527 ENSMUST00000227445 Sfmbt1 protein_coding Interval_99442 chr2 161148131 161149459 + 0 NA Intergenic Intergenic -30269 ENSMUSG00000067745.4 ENSMUSG00000067745 ENSMUST00000131401 Gm14243 lincRNA Interval_143218 chr7 4538969 4539478 + 0 NA TTS (ENSMUSG00000004961.7) protein_coding-TTS (ENSMUSG00000004961.7) -6770 ENSMUSG00000055809.7 ENSMUSG00000055809 ENSMUST00000094897 Dnaaf3 protein_coding Interval_104022 chr3 57457092 57457332 + 0 NA exon (ENSMUSG00000027803.14, exon 7 of 7) protein_coding-exon (ENSMUSG00000027803.14, exon 7 of 7) 31898 ENSMUSG00000027801.7 ENSMUSG00000027801 ENSMUST00000029377 Tm4sf4 protein_coding Interval_173354 chrX 83050033 83050907 + 0 NA intron (ENSMUSG00000045103.19, intron 1 of 16) protein_coding-intron (ENSMUSG00000045103.19, intron 1 of 78) -152971 ENSMUSG00000088097.1 ENSMUSG00000088097 ENSMUST00000157472 Gm23671 misc_RNA Interval_33384 chr11 116241583 116242122 + 0 NA Intergenic Intergenic -3775 ENSMUSG00000034282.3 ENSMUSG00000034282 ENSMUST00000037007 Evpl protein_coding Interval_70586 chr17 12150780 12151132 + 0 NA promoter-TSS (ENSMUSG00000023827.8) protein_coding-promoter-TSS (ENSMUSG00000023827.8) 31627 ENSMUSG00000023827.8 ENSMUSG00000023827 ENSMUST00000167905 Agpat4 protein_coding Interval_17596 chr10 78068855 78069990 + 0 NA promoter-TSS (ENSMUSG00000000732.9) protein_coding-promoter-TSS (ENSMUSG00000000732.9) -3917 ENSMUSG00000000732.9 ENSMUSG00000000732 ENSMUST00000219633 Icosl protein_coding Interval_136939 chr6 64935944 64936407 + 0 NA Intergenic Intergenic -42340 ENSMUSG00000107783.1 ENSMUSG00000107783 ENSMUST00000203952 Gm44038 processed_pseudogene Interval_31503 chr11 101063525 101064687 + 0 NA TTS (ENSMUSG00000019302.16) protein_coding-TTS (ENSMUSG00000019302.16) -7446 ENSMUSG00000001751.9 ENSMUSG00000001751 ENSMUST00000138409 Naglu protein_coding Interval_118543 chr4 132391291 132392585 + 0 NA intron (ENSMUSG00000066043.13, intron 2 of 5) protein_coding-intron (ENSMUSG00000066043.13, intron 2 of 12) -16371 ENSMUSG00000096350.1 ENSMUSG00000096350 ENSMUST00000175120 Gm25707 miRNA Interval_73064 chr17 34560015 34560591 + 0 NA Intergenic Intergenic 7834 ENSMUSG00000092406.1 ENSMUSG00000092406 ENSMUST00000172623 Gm20462 processed_pseudogene Interval_106452 chr3 96427401 96428710 + 0 NA Intergenic Intergenic 5322 ENSMUSG00000095513.1 ENSMUSG00000095513 ENSMUST00000083374 Gm24136 snRNA Interval_53950 chr14 63697680 63697957 + 0 NA intron (ENSMUSG00000035067.9, intron 1 of 2) protein_coding-intron (ENSMUSG00000035067.9, intron 1 of 2) -29371 ENSMUSG00000076049.4 ENSMUSG00000076049 ENSMUST00000102094 Mir598 miRNA Interval_56558 chr14 120337695 120339009 + 0 NA intron (ENSMUSG00000022139.17, intron 2 of 8) protein_coding-intron (ENSMUSG00000022139.17, intron 2 of 8) -40889 ENSMUSG00000022139.17 ENSMUSG00000022139 ENSMUST00000227153 Mbnl2 protein_coding Interval_119846 chr4 140461198 140462059 + 0 NA TTS (ENSMUSG00000085047.1) lincRNA-TTS (ENSMUSG00000085047.1) -15464 ENSMUSG00000118416.1 ENSMUSG00000118416 ENSMUST00000238366 Gm50453 unitary_pseudogene Interval_89299 chr2 19006244 19006920 + 0 NA Intergenic Intergenic 8239 ENSMUSG00000026736.2 ENSMUSG00000026736 ENSMUST00000238778 4930426L09Rik bidirectional_promoter_lncRNA Interval_98551 chr2 153167031 153168891 + 0 NA intron (ENSMUSG00000068040.10, intron 1 of 8) protein_coding-intron (ENSMUSG00000068040.10, intron 1 of 17) 12948 ENSMUSG00000089499.1 ENSMUSG00000089499 ENSMUST00000158874 Gm25643 snRNA Interval_110514 chr4 3436230 3437642 + 0 NA Intergenic Intergenic -18766 ENSMUSG00000081711.1 ENSMUSG00000081711 ENSMUST00000120165 Gm11785 processed_pseudogene Interval_166114 chr9 56813615 56814116 + 0 NA Intergenic Intergenic -12604 ENSMUSG00000111037.1 ENSMUSG00000111037 ENSMUST00000215507 Gm47235 lincRNA Interval_84133 chr19 7416782 7418432 + 0 NA promoter-TSS (ENSMUSG00000053080.10) protein_coding-promoter-TSS (ENSMUSG00000053080.10) -2802 ENSMUSG00000053080.10 ENSMUSG00000053080 ENSMUST00000160561 2700081O15Rik protein_coding Interval_98510 chr2 152883917 152884847 + 0 NA TTS (ENSMUSG00000027469.16) protein_coding-TTS (ENSMUSG00000027469.16) 19315 ENSMUSG00000093746.1 ENSMUSG00000093746 ENSMUST00000175928 Mir5622 miRNA Interval_71762 chr17 25925784 25926393 + 0 NA TTS (ENSMUSG00000025728.16) protein_coding-TTS (ENSMUSG00000025728.16) -6446 ENSMUSG00000025730.14 ENSMUSG00000025730 ENSMUST00000164738 Rab40c protein_coding Interval_128757 chr5 115110866 115112819 + 0 NA TTS (ENSMUSG00000029545.13) protein_coding-TTS (ENSMUSG00000029545.13) -3880 ENSMUSG00000072692.7 ENSMUSG00000072692 ENSMUST00000124641 Rpl37rt transcribed_processed_pseudogene Interval_120762 chr4 150518094 150519564 + 0 NA intron (ENSMUSG00000039852.17, intron 10 of 22) protein_coding-intron (ENSMUSG00000039852.17, intron 4 of 16) 49715 ENSMUSG00000085213.1 ENSMUSG00000085213 ENSMUST00000128800 Gm13091 antisense Interval_111073 chr4 11628116 11629453 + 0 NA Intergenic Intergenic -13777 ENSMUSG00000086103.1 ENSMUSG00000086103 ENSMUST00000148576 Gm11832 antisense Interval_84566 chr19 12768250 12768774 + 0 NA exon (ENSMUSG00000024695.16, exon 11 of 11) protein_coding-exon (ENSMUSG00000024695.16, exon 11 of 11) -2880 ENSMUSG00000079415.2 ENSMUSG00000079415 ENSMUST00000112933 Cntf protein_coding Interval_77859 chr18 4757644 4758542 + 0 NA Intergenic Intergenic 15017 ENSMUSG00000117585.1 ENSMUSG00000117585 ENSMUST00000234879 Gm5047 processed_pseudogene Interval_156689 chr8 57327626 57329238 + 0 NA Intergenic Intergenic 5955 ENSMUSG00000109697.1 ENSMUSG00000109697 ENSMUST00000209202 Gm34030 lincRNA Interval_77422 chr17 88596781 88598676 + 0 NA promoter-TSS (ENSMUSG00000033855.15) protein_coding-promoter-TSS (ENSMUSG00000033855.15) 10816 ENSMUSG00000117398.1 ENSMUSG00000117398 ENSMUST00000234525 Gm9406 processed_pseudogene Interval_141205 chr6 125591633 125592665 + 0 NA TTS (ENSMUSG00000001930.17) protein_coding-TTS (ENSMUSG00000001930.17) 39186 ENSMUSG00000001930.17 ENSMUSG00000001930 ENSMUST00000146264 Vwf protein_coding Interval_15591 chr10 52012654 52013090 + 0 NA Intergenic Intergenic -9630 ENSMUSG00000049641.15 ENSMUSG00000049641 ENSMUST00000163017 Vgll2 protein_coding Interval_115009 chr4 88416729 88417001 + 0 NA intron (ENSMUSG00000028497.12, intron 6 of 6) protein_coding-intron (ENSMUSG00000028497.12, intron 6 of 6) 16515 ENSMUSG00000038368.16 ENSMUSG00000038368 ENSMUST00000107147 Focad protein_coding Interval_68778 chr16 86142295 86143620 + 0 NA intron (ENSMUSG00000116556.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000116556.1, intron 1 of 1) 7719 ENSMUSG00000116556.1 ENSMUSG00000116556 ENSMUST00000231250 1700007H22Rik lincRNA Interval_170826 chr9 111001992 111002334 + 0 NA intron (ENSMUSG00000057802.8, intron 1 of 2) processed_transcript-intron (ENSMUSG00000057802.8, intron 1 of 2) -12450 ENSMUSG00000066319.6 ENSMUSG00000066319 ENSMUST00000198702 Rtp3 protein_coding Interval_141928 chr6 135439660 135440598 + 0 NA Intergenic Intergenic 77584 ENSMUSG00000030208.15 ENSMUSG00000030208 ENSMUST00000111907 Emp1 protein_coding Interval_103251 chr3 37518185 37519520 + 0 NA intron (ENSMUSG00000027722.14, intron 1 of 2) protein_coding-intron (ENSMUSG00000027722.14, intron 14 of 15) 25664 ENSMUSG00000027722.14 ENSMUSG00000027722 ENSMUST00000132958 Spata5 protein_coding Interval_134911 chr6 33513865 33514262 + 0 NA intron (ENSMUSG00000029763.17, intron 9 of 12) protein_coding-intron (ENSMUSG00000029763.17, intron 9 of 17) 81055 ENSMUSG00000107358.1 ENSMUSG00000107358 ENSMUST00000201039 Gm43168 TEC Interval_20005 chr10 111900978 111901922 + 0 NA Intergenic Intergenic 12436 ENSMUSG00000112628.1 ENSMUSG00000112628 ENSMUST00000217819 Gm47880 processed_pseudogene Interval_33336 chr11 115988412 115990103 + 0 NA promoter-TSS (ENSMUSG00000020758.15) protein_coding-promoter-TSS (ENSMUSG00000020758.15) 14532 ENSMUSG00000020758.15 ENSMUSG00000020758 ENSMUST00000130286 Itgb4 protein_coding Interval_128877 chr5 115824469 115824893 + 0 NA Intergenic Intergenic -22522 ENSMUSG00000083833.4 ENSMUSG00000083833 ENSMUST00000118829 Gm13841 processed_pseudogene Interval_35493 chr12 23026056 23026689 + 0 NA Intergenic Intergenic -7560 ENSMUSG00000112996.1 ENSMUSG00000112996 ENSMUST00000223360 Gm48064 processed_pseudogene Interval_156408 chr8 47961944 47962982 + 0 NA intron (ENSMUSG00000031563.8, intron 1 of 22) protein_coding-intron (ENSMUSG00000031563.8, intron 1 of 22) 28461 ENSMUSG00000031563.8 ENSMUSG00000031563 ENSMUST00000212282 Wwc2 protein_coding Interval_120923 chr4 151672555 151673903 + 0 NA intron (ENSMUSG00000014592.21, intron 2 of 7) protein_coding-intron (ENSMUSG00000014592.21, intron 3 of 23) 188475 ENSMUSG00000014592.21 ENSMUSG00000014592 ENSMUST00000135780 Camta1 protein_coding Interval_51646 chr14 31061976 31062676 + 0 NA intron (ENSMUSG00000042323.17, intron 14 of 25) protein_coding-intron (ENSMUSG00000042323.17, intron 14 of 27) 15109 ENSMUSG00000090305.2 ENSMUSG00000090305 ENSMUST00000171235 Gm5459 processed_pseudogene Interval_108802 chr3 131591585 131591794 + 0 NA intron (ENSMUSG00000028032.13, intron 8 of 14) protein_coding-intron (ENSMUSG00000028032.13, intron 5 of 11) 22091 ENSMUSG00000105973.1 ENSMUSG00000105973 ENSMUST00000198636 Gm42881 TEC Interval_130747 chr5 130121079 130121878 + 0 NA intron (ENSMUSG00000034118.15, intron 3 of 5) protein_coding-intron (ENSMUSG00000034118.15, intron 3 of 5) -9849 ENSMUSG00000107216.1 ENSMUSG00000107216 ENSMUST00000201281 2210412B16Rik TEC Interval_749 chr1 10596511 10596859 + 0 NA intron (ENSMUSG00000042501.12, intron 1 of 9) protein_coding-intron (ENSMUSG00000042501.12, intron 1 of 10) -41025 ENSMUSG00000094979.1 ENSMUSG00000094979 ENSMUST00000179958 Gm25253 snRNA Interval_146337 chr7 45401399 45401962 + 0 NA Intergenic Intergenic -3973 ENSMUSG00000038201.10 ENSMUSG00000038201 ENSMUST00000107774 Kcna7 protein_coding Interval_18846 chr10 91236883 91237543 + 0 NA Intergenic Intergenic 9027 ENSMUSG00000110870.1 ENSMUSG00000110870 ENSMUST00000217534 Gm47081 processed_pseudogene Interval_102659 chr3 29031613 29032265 + 0 NA Intergenic Intergenic -50361 ENSMUSG00000063600.14 ENSMUSG00000063600 ENSMUST00000140288 Egfem1 protein_coding Interval_104509 chr3 67054077 67054460 + 0 NA intron (ENSMUSG00000034544.17, intron 3 of 7) protein_coding-intron (ENSMUSG00000034544.17, intron 2 of 8) -1690 ENSMUSG00000065245.1 ENSMUSG00000065245 ENSMUST00000083311 Gm22295 snRNA Interval_80698 chr18 46427622 46428203 + 0 NA promoter-TSS (ENSMUSG00000118002.1) lincRNA-promoter-TSS (ENSMUSG00000118002.1) -869 ENSMUSG00000118002.1 ENSMUSG00000118002 ENSMUST00000237447 Gm4107 lincRNA Interval_129704 chr5 121871642 121872579 + 0 NA TTS (ENSMUSG00000042589.18) protein_coding-TTS (ENSMUSG00000042589.18) -6047 ENSMUSG00000042589.18 ENSMUSG00000042589 ENSMUST00000125267 Cux2 protein_coding Interval_147546 chr7 68223414 68224076 + 0 NA intron (ENSMUSG00000005533.10, intron 3 of 3) protein_coding-intron (ENSMUSG00000005533.10, intron 20 of 20) 11907 ENSMUSG00000005533.10 ENSMUSG00000005533 ENSMUST00000208871 Igf1r protein_coding Interval_72723 chr17 31765184 31765850 + 0 NA Intergenic Intergenic -24009 ENSMUSG00000117355.1 ENSMUSG00000117355 ENSMUST00000234824 Gm49999 lincRNA Interval_56814 chr14 122245481 122245883 + 0 NA intron (ENSMUSG00000025545.10, intron 1 of 7) protein_coding-intron (ENSMUSG00000025545.10, intron 1 of 7) -12028 ENSMUSG00000100585.1 ENSMUSG00000100585 ENSMUST00000187423 1700108J01Rik antisense Interval_124190 chr5 39623750 39623952 + 0 NA intron (ENSMUSG00000051022.7, intron 2 of 2) protein_coding-intron (ENSMUSG00000051022.7, intron 1 of 1) -13507 ENSMUSG00000107134.1 ENSMUSG00000107134 ENSMUST00000200697 Gm42528 TEC Interval_68991 chr16 89986830 89987119 + 0 NA intron (ENSMUSG00000002489.16, intron 2 of 11) protein_coding-intron (ENSMUSG00000002489.16, intron 2 of 11) -103009 ENSMUSG00000116536.1 ENSMUSG00000116536 ENSMUST00000232386 Gm2805 processed_pseudogene Interval_56237 chr14 114566155 114566623 + 0 NA Intergenic Intergenic 254836 ENSMUSG00000103140.1 ENSMUSG00000103140 ENSMUST00000194590 Gm37495 TEC Interval_34844 chr12 12595418 12595631 + 0 NA Intergenic Intergenic 74393 ENSMUSG00000118614.1 ENSMUSG00000118614 ENSMUST00000239228 AC107703.1 lincRNA Interval_44759 chr13 48313699 48314010 + 0 NA exon (ENSMUSG00000114881.1, exon 1 of 1) processed_pseudogene-exon (ENSMUSG00000114881.1, exon 1 of 1) 1184 ENSMUSG00000114881.1 ENSMUSG00000114881 ENSMUST00000225756 Gm8588 processed_pseudogene Interval_4290 chr1 72407531 72407986 + 0 NA Intergenic Intergenic -51741 ENSMUSG00000085812.1 ENSMUSG00000085812 ENSMUST00000146593 Gm15843 processed_pseudogene Interval_139604 chr6 102666890 102667441 + 0 NA Intergenic Intergenic -6269 ENSMUSG00000107533.1 ENSMUSG00000107533 ENSMUST00000204142 Gm44422 processed_pseudogene Interval_125794 chr5 74194720 74196211 + 0 NA promoter-TSS (ENSMUSG00000049907.8) protein_coding-promoter-TSS (ENSMUSG00000049907.8) -2426 ENSMUSG00000049907.8 ENSMUSG00000049907 ENSMUST00000201837 Rasl11b protein_coding Interval_84770 chr19 16459223 16460652 + 0 NA intron (ENSMUSG00000024697.4, intron 1 of 6) protein_coding-intron (ENSMUSG00000024697.4, intron 1 of 6) 20637 ENSMUSG00000024697.4 ENSMUSG00000024697 ENSMUST00000237350 Gna14 protein_coding Interval_124638 chr5 52651537 52652075 + 0 NA intron (ENSMUSG00000029173.12, intron 8 of 10) protein_coding-intron (ENSMUSG00000029173.12, intron 8 of 10) -3326 ENSMUSG00000029173.12 ENSMUSG00000029173 ENSMUST00000123856 Sepsecs protein_coding Interval_63610 chr15 102335394 102336358 + 0 NA promoter-TSS (ENSMUSG00000001285.12) protein_coding-promoter-TSS (ENSMUSG00000001285.12) 3085 ENSMUSG00000036678.8 ENSMUSG00000036678 ENSMUST00000230349 Aaas protein_coding Interval_134929 chr6 33782187 33782394 + 0 NA intron (ENSMUSG00000029763.17, intron 2 of 4) protein_coding-intron (ENSMUSG00000029763.17, intron 11 of 17) -90136 ENSMUSG00000107103.1 ENSMUSG00000107103 ENSMUST00000202529 Gm43164 TEC Interval_124997 chr5 63575135 63576379 + 0 NA Intergenic Intergenic 75137 ENSMUSG00000104868.1 ENSMUSG00000104868 ENSMUST00000067917 Gm9954 TEC Interval_91785 chr2 49552302 49553141 + 0 NA TTS (ENSMUSG00000069495.12) protein_coding-TTS (ENSMUSG00000069495.12) 23846 ENSMUSG00000069495.12 ENSMUSG00000069495 ENSMUST00000152485 Epc2 protein_coding Interval_6836 chr1 119985839 119986112 + 0 NA promoter-TSS (ENSMUSG00000092245.1) processed_pseudogene-promoter-TSS (ENSMUSG00000092245.1) -820 ENSMUSG00000092245.1 ENSMUSG00000092245 ENSMUST00000174509 Gm17973 processed_pseudogene Interval_77805 chr18 3839616 3841432 + 0 NA Intergenic Intergenic 18056 ENSMUSG00000117463.1 ENSMUSG00000117463 ENSMUST00000234895 Rpl7a-ps6 processed_pseudogene Interval_23031 chr11 19094168 19094640 + 0 NA Intergenic Intergenic 23030 ENSMUSG00000102585.1 ENSMUSG00000102585 ENSMUST00000193150 Gm37439 TEC Interval_110287 chr3 155915154 155915464 + 0 NA Intergenic Intergenic 10800 ENSMUSG00000104377.1 ENSMUSG00000104377 ENSMUST00000193321 Gm37515 processed_pseudogene Interval_163009 chr9 14492933 14493286 + 0 NA intron (ENSMUSG00000053914.9, intron 1 of 2) protein_coding-intron (ENSMUSG00000053914.9, intron 1 of 1) 7291 ENSMUSG00000053914.9 ENSMUSG00000053914 ENSMUST00000115647 Kdm4d protein_coding Interval_76942 chr17 85083740 85084256 + 0 NA promoter-TSS (ENSMUSG00000024127.15) protein_coding-promoter-TSS (ENSMUSG00000024127.15) -6524 ENSMUSG00000024127.15 ENSMUSG00000024127 ENSMUST00000234393 Prepl protein_coding Interval_3404 chr1 58005812 58006845 + 0 NA intron (ENSMUSG00000026039.9, intron 5 of 8) protein_coding-intron (ENSMUSG00000026039.9, intron 5 of 8) -16388 ENSMUSG00000026039.9 ENSMUSG00000026039 ENSMUST00000190746 Sgo2a protein_coding Interval_83284 chr18 83469241 83470236 + 0 NA Intergenic Intergenic 18784 ENSMUSG00000118156.1 ENSMUSG00000118156 ENSMUST00000236581 Gm7569 processed_pseudogene Interval_33950 chr11 119621791 119622266 + 0 NA intron (ENSMUSG00000025583.15, intron 1 of 32) protein_coding-intron (ENSMUSG00000025583.15, intron 1 of 33) 24602 ENSMUSG00000083870.1 ENSMUSG00000083870 ENSMUST00000121392 Gm11761 processed_pseudogene Interval_121558 chr5 3433161 3433882 + 0 NA intron (ENSMUSG00000040274.11, intron 4 of 7) protein_coding-intron (ENSMUSG00000040274.11, intron 3 of 6) -37428 ENSMUSG00000040274.11 ENSMUSG00000040274 ENSMUST00000199396 Cdk6 protein_coding Interval_172920 chrX 53974389 53977330 + 0 NA promoter-TSS (ENSMUSG00000086711.1) processed_transcript-promoter-TSS (ENSMUSG00000086711.1) -859 ENSMUSG00000086711.1 ENSMUSG00000086711 ENSMUST00000152691 Gm15482 processed_transcript Interval_87454 chr19 51741204 51742571 + 0 NA Intergenic Intergenic -50339 ENSMUSG00000097719.1 ENSMUSG00000097719 ENSMUST00000180885 Rpl31-ps18 processed_pseudogene Interval_143015 chr6 148395211 148395869 + 0 NA intron (ENSMUSG00000030306.14, intron 5 of 16) protein_coding-intron (ENSMUSG00000030306.14, intron 5 of 19) -4211 ENSMUSG00000107706.1 ENSMUSG00000107706 ENSMUST00000203708 Gm44022 TEC Interval_154441 chr8 17436854 17437334 + 0 NA intron (ENSMUSG00000060924.15, intron 1 of 2) protein_coding-intron (ENSMUSG00000060924.15, intron 1 of 69) 98187 ENSMUSG00000060924.15 ENSMUSG00000060924 ENSMUST00000122983 Csmd1 protein_coding Interval_133792 chr6 12260466 12260915 + 0 NA Intergenic Intergenic 132064 ENSMUSG00000108209.1 ENSMUSG00000108209 ENSMUST00000203296 Gm32222 processed_pseudogene Interval_35626 chr12 26071540 26071985 + 0 NA Intergenic Intergenic -78554 ENSMUSG00000113611.1 ENSMUSG00000113611 ENSMUST00000220612 Gm47750 processed_pseudogene Interval_68542 chr16 78516557 78517957 + 0 NA Intergenic Intergenic 27577 ENSMUSG00000116959.1 ENSMUSG00000116959 ENSMUST00000232118 Gm49604 TEC Interval_114625 chr4 83282032 83282365 + 0 NA intron (ENSMUSG00000038172.14, intron 2 of 19) protein_coding-intron (ENSMUSG00000038172.14, intron 2 of 6) 2971 ENSMUSG00000038172.14 ENSMUSG00000038172 ENSMUST00000148811 Ttc39b protein_coding Interval_53174 chr14 54912192 54913200 + 0 NA promoter-TSS (ENSMUSG00000022199.12) protein_coding-promoter-TSS (ENSMUSG00000022199.12) 436 ENSMUSG00000022199.12 ENSMUSG00000022199 ENSMUST00000226456 Slc22a17 protein_coding Interval_114493 chr4 81177619 81179380 + 0 NA Intergenic Intergenic 159905 ENSMUSG00000077607.1 ENSMUSG00000077607 ENSMUST00000104419 Gm25803 snoRNA Interval_172383 chrX 16340828 16341222 + 0 NA Intergenic Intergenic 38622 ENSMUSG00000083551.1 ENSMUSG00000083551 ENSMUST00000120012 Gm14516 processed_pseudogene Interval_154305 chr8 14221545 14222249 + 0 NA intron (ENSMUSG00000047495.15, intron 1 of 13) protein_coding-intron (ENSMUSG00000047495.15, intron 1 of 14) 51414 ENSMUSG00000088311.1 ENSMUSG00000088311 ENSMUST00000157686 Gm26184 snoRNA Interval_41287 chr12 112490502 112490906 + 0 NA intron (ENSMUSG00000043122.7, intron 1 of 3) protein_coding-intron (ENSMUSG00000043122.7, intron 1 of 4) 1230 ENSMUSG00000043122.7 ENSMUSG00000043122 ENSMUST00000223266 A530016L24Rik protein_coding Interval_51006 chr14 21579135 21579999 + 0 NA intron (ENSMUSG00000021767.19, intron 2 of 5) protein_coding-intron (ENSMUSG00000021767.19, intron 2 of 16) 62692 ENSMUSG00000021767.19 ENSMUSG00000021767 ENSMUST00000226589 Kat6b protein_coding Interval_134209 chr6 23018681 23019057 + 0 NA intron (ENSMUSG00000068748.7, intron 14 of 29) protein_coding-intron (ENSMUSG00000068748.7, intron 14 of 29) 114047 ENSMUSG00000029695.13 ENSMUSG00000029695 ENSMUST00000152280 Aass protein_coding Interval_11077 chr1 179207206 179207740 + 0 NA intron (ENSMUSG00000055067.15, intron 5 of 11) protein_coding-intron (ENSMUSG00000055067.15, intron 2 of 8) -289859 ENSMUSG00000089713.1 ENSMUSG00000089713 ENSMUST00000162545 Gm16564 antisense Interval_125545 chr5 69640345 69640587 + 0 NA Intergenic Intergenic -48192 ENSMUSG00000029209.15 ENSMUSG00000029209 ENSMUST00000153536 Gnpda2 protein_coding Interval_2480 chr1 39663724 39664944 + 0 NA TTS (ENSMUSG00000057173.8) protein_coding-TTS (ENSMUSG00000057173.8) -12860 ENSMUSG00000050967.5 ENSMUSG00000050967 ENSMUST00000053355 Creg2 protein_coding Interval_79292 chr18 30174488 30174753 + 0 NA Intergenic Intergenic -92629 ENSMUSG00000117465.1 ENSMUSG00000117465 ENSMUST00000234467 Gm49980 lincRNA Interval_166530 chr9 60664474 60665517 + 0 NA intron (ENSMUSG00000047766.15, intron 8 of 16) protein_coding-intron (ENSMUSG00000047766.15, intron 8 of 16) 22539 ENSMUSG00000047766.15 ENSMUSG00000047766 ENSMUST00000132366 Lrrc49 protein_coding Interval_152919 chr7 139726812 139727773 + 0 NA Intergenic Intergenic 7893 ENSMUSG00000056777.5 ENSMUSG00000056777 ENSMUST00000072532 Rpl21-ps13 processed_pseudogene Interval_71433 chr17 23725868 23727933 + 0 NA intron (ENSMUSG00000023908.8, intron 1 of 6) protein_coding-intron (ENSMUSG00000023908.8, intron 1 of 7) 431 ENSMUSG00000023908.8 ENSMUSG00000023908 ENSMUST00000233812 Pkmyt1 protein_coding Interval_145533 chr7 35415207 35416606 + 0 NA promoter-TSS (ENSMUSG00000023072.14) protein_coding-promoter-TSS (ENSMUSG00000023072.14) 18776 ENSMUSG00000023072.14 ENSMUSG00000023072 ENSMUST00000150421 Cep89 protein_coding Interval_134616 chr6 29993990 29994275 + 0 NA TTS (ENSMUSG00000045709.11) transcribed_unitary_pseudogene-TTS (ENSMUSG00000045709.11) 5744 ENSMUSG00000095989.1 ENSMUSG00000095989 ENSMUST00000178068 Gm23049 miRNA Interval_42509 chr13 14289587 14290738 + 0 NA intron (ENSMUSG00000021301.9, intron 7 of 17) protein_coding-intron (ENSMUSG00000021301.9, intron 15 of 28) -68224 ENSMUSG00000113563.1 ENSMUSG00000113563 ENSMUST00000221355 Gm2492 processed_pseudogene Interval_118372 chr4 130952192 130953043 + 0 NA intron (ENSMUSG00000040533.7, intron 5 of 7) protein_coding-intron (ENSMUSG00000040533.7, intron 5 of 7) 8232 ENSMUSG00000040533.7 ENSMUSG00000040533 ENSMUST00000102576 Matn1 protein_coding Interval_41034 chr12 110713603 110714279 + 0 NA Intergenic Intergenic -11213 ENSMUSG00000021270.13 ENSMUSG00000021270 ENSMUST00000149189 Hsp90aa1 protein_coding Interval_144841 chr7 28556032 28557135 + 0 NA intron (ENSMUSG00000109336.1, intron 1 of 12) protein_coding-intron (ENSMUSG00000109336.1, intron 1 of 12) 4401 ENSMUSG00000098558.1 ENSMUSG00000098558 ENSMUST00000183983 Mir7049 miRNA Interval_51364 chr14 27029672 27031854 + 0 NA Intergenic Intergenic 36347 ENSMUSG00000040726.10 ENSMUSG00000040726 ENSMUST00000035433 Hesx1 protein_coding Interval_148845 chr7 89246456 89247024 + 0 NA intron (ENSMUSG00000039428.11, intron 2 of 5) protein_coding-intron (ENSMUSG00000039428.11, intron 4 of 14) -29643 ENSMUSG00000109576.1 ENSMUSG00000109576 ENSMUST00000208963 Gm44704 TEC Interval_37977 chr12 73547848 73548085 + 0 NA promoter-TSS (ENSMUSG00000113800.1) lincRNA-promoter-TSS (ENSMUSG00000113800.1) -512 ENSMUSG00000113800.1 ENSMUSG00000113800 ENSMUST00000222490 2210039B01Rik lincRNA Interval_130979 chr5 134373417 134374267 + 0 NA intron (ENSMUSG00000023079.14, intron 7 of 13) protein_coding-intron (ENSMUSG00000023079.14, intron 22 of 30) 3182 ENSMUSG00000023079.14 ENSMUSG00000023079 ENSMUST00000201647 Gtf2ird1 protein_coding Interval_84277 chr19 9424100 9424428 + 0 NA Intergenic Intergenic -84278 ENSMUSG00000101398.1 ENSMUSG00000101398 ENSMUST00000185690 Gm2617 unprocessed_pseudogene Interval_39637 chr12 91724080 91724937 + 0 NA intron (ENSMUSG00000020961.15, intron 3 of 3) protein_coding-intron (ENSMUSG00000020961.15, intron 3 of 6) -38395 ENSMUSG00000090722.8 ENSMUSG00000090722 ENSMUST00000167777 Gm8378 sense_intronic Interval_72118 chr17 28140634 28142844 + 0 NA promoter-TSS (ENSMUSG00000038677.14) protein_coding-promoter-TSS (ENSMUSG00000038677.14) -579 ENSMUSG00000038677.14 ENSMUSG00000038677 ENSMUST00000142170 Scube3 protein_coding Interval_35220 chr12 18395825 18397164 + 0 NA Intergenic Intergenic 8739 ENSMUSG00000113402.1 ENSMUSG00000113402 ENSMUST00000221998 Gm40848 processed_pseudogene Interval_47047 chr13 74751267 74751625 + 0 NA intron (ENSMUSG00000021585.10, intron 4 of 31) protein_coding-intron (ENSMUSG00000021585.10, intron 4 of 30) 17415 ENSMUSG00000113015.1 ENSMUSG00000113015 ENSMUST00000222599 Gm6296 processed_pseudogene Interval_104390 chr3 65145060 65145390 + 0 NA intron (ENSMUSG00000104093.1, intron 3 of 4) protein_coding-intron (ENSMUSG00000027827.17, intron 1 of 13) 157460 ENSMUSG00000104093.1 ENSMUSG00000104093 ENSMUST00000195489 A330015K06Rik antisense Interval_164376 chr9 36509608 36510054 + 0 NA Intergenic Intergenic 27535 ENSMUSG00000098949.1 ENSMUSG00000098949 ENSMUST00000184837 Gm27160 processed_pseudogene Interval_117350 chr4 123160283 123163325 + 0 NA Intergenic Intergenic -21874 ENSMUSG00000028651.12 ENSMUSG00000028651 ENSMUST00000137778 Ppie protein_coding Interval_14955 chr10 41449513 41450945 + 0 NA promoter-TSS (ENSMUSG00000019826.11) protein_coding-promoter-TSS (ENSMUSG00000019826.11) -206 ENSMUSG00000019826.11 ENSMUSG00000019826 ENSMUST00000215881 Zbtb24 protein_coding Interval_113524 chr4 55519686 55519973 + 0 NA Intergenic Intergenic 11535 ENSMUSG00000082952.1 ENSMUSG00000082952 ENSMUST00000119155 Gm12507 processed_pseudogene Interval_86464 chr19 40754066 40755237 + 0 NA intron (ENSMUSG00000108929.2, intron 1 of 33) protein_coding-intron (ENSMUSG00000108929.2, intron 1 of 25) 5898 ENSMUSG00000108929.2 ENSMUSG00000108929 ENSMUST00000207791 Cc2d2b protein_coding Interval_127029 chr5 99727817 99729813 + 0 NA promoter-TSS (ENSMUSG00000089809.9) protein_coding-promoter-TSS (ENSMUSG00000089809.9) -3 ENSMUSG00000089809.9 ENSMUSG00000089809 ENSMUST00000161148 Rasgef1b protein_coding Interval_173922 chrX 111894412 111895678 + 0 NA intron (ENSMUSG00000109156.1, intron 1 of 15) protein_coding-intron (ENSMUSG00000109156.1, intron 1 of 15) 3656 ENSMUSG00000109156.1 ENSMUSG00000109156 ENSMUST00000207546 Gm45194 protein_coding Interval_1079 chr1 15210178 15210498 + 0 NA Intergenic Intergenic 59459 ENSMUSG00000073737.3 ENSMUSG00000073737 ENSMUST00000086739 Gm10566 processed_pseudogene Interval_114211 chr4 67915820 67916026 + 0 NA Intergenic Intergenic -14958 ENSMUSG00000083087.1 ENSMUSG00000083087 ENSMUST00000117071 Gm11249 processed_pseudogene Interval_26897 chr11 61377596 61378398 + 0 NA promoter-TSS (ENSMUSG00000010122.14) protein_coding-promoter-TSS (ENSMUSG00000010122.14) 348 ENSMUSG00000010122.14 ENSMUSG00000010122 ENSMUST00000148671 Slc47a1 protein_coding Interval_7018 chr1 122351543 122351756 + 0 NA Intergenic Intergenic 146504 ENSMUSG00000099960.1 ENSMUSG00000099960 ENSMUST00000185679 Gm28590 lincRNA Interval_173975 chrX 120292745 120293655 + 0 NA TTS (ENSMUSG00000034755.18) protein_coding-TTS (ENSMUSG00000034755.18) 2797 ENSMUSG00000034755.18 ENSMUSG00000034755 ENSMUST00000191653 Pcdh11x protein_coding Interval_152184 chr7 130502771 130503037 + 0 NA intron (ENSMUSG00000030850.17, intron 7 of 11) protein_coding-intron (ENSMUSG00000030850.17, intron 7 of 11) 16557 ENSMUSG00000030850.17 ENSMUSG00000030850 ENSMUST00000207141 Ate1 protein_coding Interval_13932 chr10 24797004 24797530 + 0 NA TTS (ENSMUSG00000019989.8) protein_coding-TTS (ENSMUSG00000019989.8) 38905 ENSMUSG00000019989.8 ENSMUSG00000019989 ENSMUST00000220209 Enpp3 protein_coding Interval_78047 chr18 7468130 7468372 + 0 NA intron (ENSMUSG00000057440.8, intron 3 of 12) protein_coding-intron (ENSMUSG00000057440.8, intron 3 of 16) -80736 ENSMUSG00000117556.1 ENSMUSG00000117556 ENSMUST00000234527 Gm18948 processed_pseudogene Interval_97773 chr2 143949076 143949317 + 0 NA intron (ENSMUSG00000027422.15, intron 4 of 5) protein_coding-intron (ENSMUSG00000027422.15, intron 22 of 23) 8449 ENSMUSG00000027422.15 ENSMUSG00000027422 ENSMUST00000037875 Rrbp1 protein_coding Interval_149394 chr7 98102418 98103936 + 0 NA intron (ENSMUSG00000030761.16, intron 1 of 46) protein_coding-intron (ENSMUSG00000030761.16, intron 2 of 47) -12049 ENSMUSG00000030761.16 ENSMUSG00000030761 ENSMUST00000131632 Myo7a protein_coding Interval_165744 chr9 52102114 52102298 + 0 NA Intergenic Intergenic 1573 ENSMUSG00000099213.1 ENSMUSG00000099213 ENSMUST00000185123 Gm27686 miRNA Interval_50583 chr14 16044002 16044832 + 0 NA Intergenic Intergenic -7220 ENSMUSG00000114390.1 ENSMUSG00000114390 ENSMUST00000223757 1700062C10Rik lincRNA Interval_47042 chr13 74639000 74640463 + 0 NA promoter-TSS (ENSMUSG00000021583.7) protein_coding-promoter-TSS (ENSMUSG00000021583.7) -26368 ENSMUSG00000021583.7 ENSMUSG00000021583 ENSMUST00000222127 Erap1 protein_coding Interval_64798 chr16 15877000 15877338 + 0 NA Intergenic Intergenic 5340 ENSMUSG00000116102.1 ENSMUSG00000116102 ENSMUST00000230053 Gm20082 processed_pseudogene Interval_172512 chrX 22636350 22637093 + 0 NA Intergenic Intergenic 175089 ENSMUSG00000052025.9 ENSMUSG00000052025 ENSMUST00000140102 Ppp1r2-ps7 transcribed_processed_pseudogene Interval_7237 chr1 128108741 128110133 + 0 NA exon (ENSMUSG00000056211.13, exon 1 of 1) protein_coding-exon (ENSMUSG00000056211.13, exon 1 of 1) -7967 ENSMUSG00000103999.1 ENSMUSG00000103999 ENSMUST00000193284 Gm38026 TEC Interval_166760 chr9 62476907 62477446 + 0 NA intron (ENSMUSG00000041729.15, intron 2 of 3) protein_coding-intron (ENSMUSG00000041729.15, intron 2 of 11) -28028 ENSMUSG00000041729.15 ENSMUSG00000041729 ENSMUST00000123379 Coro2b protein_coding Interval_53678 chr14 60809975 60810262 + 0 NA intron (ENSMUSG00000021993.10, intron 8 of 15) protein_coding-intron (ENSMUSG00000021993.10, intron 8 of 18) 25536 ENSMUSG00000021993.10 ENSMUSG00000021993 ENSMUST00000223709 Mipep protein_coding Interval_136923 chr6 64606906 64608366 + 0 NA intron (ENSMUSG00000071424.10, intron 14 of 15) protein_coding-intron (ENSMUSG00000071424.10, intron 14 of 15) -55552 ENSMUSG00000071424.10 ENSMUSG00000071424 ENSMUST00000210324 Grid2 protein_coding Interval_88909 chr2 12496988 12497596 + 0 NA Intergenic Intergenic -75266 ENSMUSG00000083547.2 ENSMUSG00000083547 ENSMUST00000117101 Gm13321 processed_pseudogene Interval_14689 chr10 39026690 39026959 + 0 NA intron (ENSMUSG00000019846.11, intron 5 of 9) protein_coding-intron (ENSMUSG00000019846.11, intron 5 of 37) -78957 ENSMUSG00000019846.11 ENSMUSG00000019846 ENSMUST00000163036 Lama4 protein_coding Interval_77256 chr17 87612327 87614106 + 0 NA Intergenic Intergenic -22763 ENSMUSG00000045394.9 ENSMUSG00000045394 ENSMUST00000234623 Epcam protein_coding Interval_95447 chr2 109498493 109498865 + 0 NA intron (ENSMUSG00000081746.2, intron 1 of 1) unprocessed_pseudogene-intron (ENSMUSG00000081746.2, intron 1 of 1) 21676 ENSMUSG00000081746.2 ENSMUSG00000081746 ENSMUST00000117315 Gm13925 unprocessed_pseudogene Interval_48995 chr13 106795918 106796441 + 0 NA exon (ENSMUSG00000101308.1, exon 4 of 4) antisense-exon (ENSMUSG00000101308.1, exon 4 of 4) 8109 ENSMUSG00000101308.1 ENSMUSG00000101308 ENSMUST00000187867 Gm28989 antisense Interval_6322 chr1 105879603 105879880 + 0 NA Intergenic Intergenic 11271 ENSMUSG00000102690.1 ENSMUSG00000102690 ENSMUST00000194221 Gm37779 TEC Interval_143276 chr7 4911705 4912740 + 0 NA intron (ENSMUSG00000109441.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000109441.1, intron 1 of 1) 135 ENSMUSG00000109441.1 ENSMUSG00000109441 ENSMUST00000208121 Gm44983 lincRNA Interval_164523 chr9 37691366 37691573 + 0 NA Intergenic Intergenic -5046 ENSMUSG00000059252.5 ENSMUSG00000059252 ENSMUST00000112150 Tpt1-ps5 processed_pseudogene Interval_135308 chr6 38207685 38207898 + 0 NA intron (ENSMUSG00000063455.16, intron 1 of 19) protein_coding-intron (ENSMUSG00000063455.16, intron 1 of 19) 46218 ENSMUSG00000063455.16 ENSMUSG00000063455 ENSMUST00000152464 D630045J12Rik protein_coding Interval_60704 chr15 76264284 76264787 + 0 NA Intergenic Intergenic 2884 ENSMUSG00000092920.1 ENSMUSG00000092920 ENSMUST00000175179 Mirt2 misc_RNA Interval_111779 chr4 28657049 28657721 + 0 NA Intergenic Intergenic 45059 ENSMUSG00000081011.1 ENSMUSG00000081011 ENSMUST00000119094 Gm11913 processed_pseudogene Interval_77444 chr17 88844793 88845017 + 0 NA Intergenic Intergenic 11717 ENSMUSG00000117566.1 ENSMUSG00000117566 ENSMUST00000234561 Gm9407 processed_pseudogene Interval_49450 chr13 112115911 112116323 + 0 NA Intergenic Intergenic -21999 ENSMUSG00000114361.1 ENSMUSG00000114361 ENSMUST00000224924 Gm31104 processed_pseudogene Interval_16250 chr10 61722387 61722708 + 0 NA intron (ENSMUSG00000020085.15, intron 1 of 8) protein_coding-intron (ENSMUSG00000020085.15, intron 1 of 9) -5601 ENSMUSG00000020085.15 ENSMUSG00000020085 ENSMUST00000140664 Aifm2 protein_coding Interval_140628 chr6 120191968 120193482 + 0 NA intron (ENSMUSG00000041377.12, intron 1 of 3) protein_coding-intron (ENSMUSG00000041377.12, intron 1 of 3) -48975 ENSMUSG00000095086.1 ENSMUSG00000095086 ENSMUST00000180263 Gm25327 snRNA Interval_487 chr1 6309465 6309692 + 0 NA Intergenic Intergenic -49640 ENSMUSG00000087247.3 ENSMUSG00000087247 ENSMUST00000133144 Alkal1 protein_coding Interval_23957 chr11 28826416 28826721 + 0 NA Intergenic Intergenic 62840 ENSMUSG00000065415.1 ENSMUSG00000065415 ENSMUST00000083481 Mir217 miRNA Interval_168831 chr9 87738992 87741108 + 0 NA promoter-TSS (ENSMUSG00000102684.1) TEC-promoter-TSS (ENSMUSG00000102684.1) -30 ENSMUSG00000102684.1 ENSMUSG00000102684 ENSMUST00000194954 Gm37374 TEC Interval_154227 chr8 13594775 13595289 + 0 NA TTS (ENSMUSG00000031453.16) protein_coding-TTS (ENSMUSG00000031453.16) -32571 ENSMUSG00000031452.15 ENSMUSG00000031452 ENSMUST00000132787 1700029H14Rik protein_coding Interval_80826 chr18 47703527 47704555 + 0 NA intron (ENSMUSG00000118259.1, intron 2 of 5) lincRNA-intron (ENSMUSG00000118259.1, intron 2 of 5) -25726 ENSMUSG00000117765.1 ENSMUSG00000117765 ENSMUST00000237983 Gm5236 processed_pseudogene Interval_12588 chr10 3646017 3647146 + 0 NA Intergenic Intergenic 106293 ENSMUSG00000019762.4 ENSMUSG00000019762 ENSMUST00000141745 Iyd protein_coding Interval_146963 chr7 56330878 56331327 + 0 NA intron (ENSMUSG00000030450.11, intron 16 of 22) protein_coding-intron (ENSMUSG00000030450.11, intron 17 of 23) -87952 ENSMUSG00000108773.1 ENSMUSG00000108773 ENSMUST00000206278 Gm44506 antisense Interval_74936 chr17 57541957 57542249 + 0 NA intron (ENSMUSG00000090655.2, intron 1 of 6) protein_coding-intron (ENSMUSG00000090655.2, intron 1 of 6) 3402 ENSMUSG00000090655.2 ENSMUSG00000090655 ENSMUST00000234162 Vmn2r120 protein_coding Interval_99020 chr2 156704353 156704673 + 0 NA exon (ENSMUSG00000061689.15, exon 2 of 11) protein_coding-exon (ENSMUSG00000061689.15, exon 2 of 11) 16396 ENSMUSG00000086638.7 ENSMUSG00000086638 ENSMUST00000130089 4930405A21Rik processed_transcript Interval_124927 chr5 60941623 60941855 + 0 NA intron (ENSMUSG00000105903.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000105903.1, intron 1 of 1) 3910 ENSMUSG00000105903.1 ENSMUSG00000105903 ENSMUST00000199566 1700014F14Rik lincRNA Interval_154854 chr8 24406732 24407501 + 0 NA Intergenic Intergenic -5063 ENSMUSG00000109141.1 ENSMUSG00000109141 ENSMUST00000208709 Gm30692 lincRNA Interval_9539 chr1 158980188 158980596 + 0 NA promoter-TSS (ENSMUSG00000047661.9) lincRNA-promoter-TSS (ENSMUSG00000047661.9) -321 ENSMUSG00000047661.9 ENSMUSG00000047661 ENSMUST00000162474 1600012P17Rik lincRNA Interval_112097 chr4 34668189 34668669 + 0 NA intron (ENSMUSG00000028293.14, intron 5 of 5) protein_coding-intron (ENSMUSG00000028293.14, intron 7 of 7) -15450 ENSMUSG00000088338.1 ENSMUSG00000088338 ENSMUST00000157713 Gm22849 misc_RNA Interval_138000 chr6 84067583 84067958 + 0 NA intron (ENSMUSG00000033788.15, intron 8 of 55) protein_coding-intron (ENSMUSG00000033788.15, intron 9 of 54) 36182 ENSMUSG00000108142.1 ENSMUSG00000108142 ENSMUST00000203282 Gm7498 processed_pseudogene Interval_139574 chr6 101427039 101427863 + 0 NA Intergenic Intergenic -78621 ENSMUSG00000107720.1 ENSMUSG00000107720 ENSMUST00000204058 Gm43946 TEC Interval_163457 chr9 21528506 21528706 + 0 NA intron (ENSMUSG00000057191.13, intron 2 of 7) protein_coding-intron (ENSMUSG00000057191.13, intron 2 of 7) 2405 ENSMUSG00000057191.13 ENSMUSG00000057191 ENSMUST00000076326 AB124611 protein_coding Interval_23180 chr11 20377571 20377759 + 0 NA Intergenic Intergenic -41652 ENSMUSG00000078965.5 ENSMUSG00000078965 ENSMUST00000180654 Gm12033 processed_pseudogene Interval_86988 chr19 45363271 45364379 + 0 NA promoter-TSS (ENSMUSG00000025217.15) protein_coding-promoter-TSS (ENSMUSG00000025217.15) 68 ENSMUSG00000025217.15 ENSMUSG00000025217 ENSMUST00000224478 Btrc protein_coding Interval_3662 chr1 60485577 60485992 + 0 NA exon (ENSMUSG00000026014.15, exon 14 of 14) protein_coding-exon (ENSMUSG00000026014.15, exon 14 of 14) 17481 ENSMUSG00000026014.15 ENSMUSG00000026014 ENSMUST00000142258 Raph1 protein_coding Interval_7271 chr1 128347633 128347987 + 0 NA intron (ENSMUSG00000026355.11, intron 7 of 15) protein_coding-intron (ENSMUSG00000026355.11, intron 7 of 16) -1768 ENSMUSG00000026355.11 ENSMUSG00000026355 ENSMUST00000188755 Mcm6 protein_coding Interval_114279 chr4 70451926 70452319 + 0 NA intron (ENSMUSG00000039270.9, intron 3 of 5) protein_coding-intron (ENSMUSG00000039270.9, intron 3 of 5) -39199 ENSMUSG00000088367.1 ENSMUSG00000088367 ENSMUST00000157742 Gm26320 misc_RNA Interval_165784 chr9 52979421 52979711 + 0 NA Intergenic Intergenic -184622 ENSMUSG00000111693.1 ENSMUSG00000111693 ENSMUST00000213563 Gm47986 processed_pseudogene Interval_11910 chr1 186980409 186980830 + 0 NA Intergenic Intergenic -13016 ENSMUSG00000104312.1 ENSMUSG00000104312 ENSMUST00000191895 Gm37912 antisense Interval_171731 chr9 120560343 120560985 + 0 NA exon (ENSMUSG00000041608.8, exon 8 of 11) protein_coding-exon (ENSMUSG00000041608.8, exon 8 of 11) 2630 ENSMUSG00000041608.8 ENSMUSG00000041608 ENSMUST00000143579 Entpd3 protein_coding Interval_59327 chr15 51687142 51687766 + 0 NA Intergenic Intergenic -57819 ENSMUSG00000115563.1 ENSMUSG00000115563 ENSMUST00000227000 Gm34562 lincRNA Interval_158496 chr8 84066253 84067595 + 0 NA promoter-TSS (ENSMUSG00000031706.7) protein_coding-promoter-TSS (ENSMUSG00000031706.7) 90 ENSMUSG00000031706.7 ENSMUSG00000031706 ENSMUST00000005600 Rfx1 protein_coding Interval_42142 chr13 9122209 9122587 + 0 NA intron (ENSMUSG00000033499.14, intron 3 of 3) protein_coding-intron (ENSMUSG00000033499.14, intron 2 of 16) 13093 ENSMUSG00000088442.1 ENSMUSG00000088442 ENSMUST00000157817 Gm23553 misc_RNA Interval_99283 chr2 158641620 158642421 + 0 NA Intergenic Intergenic 3437 ENSMUSG00000093120.1 ENSMUSG00000093120 ENSMUST00000175379 Mir3474 miRNA Interval_49240 chr13 109759148 109759971 + 0 NA intron (ENSMUSG00000021699.17, intron 4 of 15) protein_coding-intron (ENSMUSG00000021699.17, intron 3 of 14) -144250 ENSMUSG00000084651.1 ENSMUSG00000084651 ENSMUST00000122702 Mir1904 miRNA Interval_102058 chr3 16236052 16236366 + 0 NA Intergenic Intergenic 52973 ENSMUSG00000047213.14 ENSMUSG00000047213 ENSMUST00000108346 Ythdf3 protein_coding Interval_111002 chr4 11130826 11131123 + 0 NA Intergenic Intergenic -2353 ENSMUSG00000083025.1 ENSMUSG00000083025 ENSMUST00000121003 Gm11829 processed_pseudogene Interval_148253 chr7 80105569 80107003 + 0 NA intron (ENSMUSG00000030541.16, intron 1 of 3) protein_coding-intron (ENSMUSG00000030541.16, intron 1 of 10) 6348 ENSMUSG00000108494.1 ENSMUSG00000108494 ENSMUST00000206384 Gm45203 TEC Interval_69084 chr16 90511717 90512032 + 0 NA Intergenic Intergenic 38735 ENSMUSG00000116753.1 ENSMUSG00000116753 ENSMUST00000232652 Gm36001 lincRNA Interval_5745 chr1 91398005 91399309 + 0 NA promoter-TSS (ENSMUSG00000026309.14) protein_coding-promoter-TSS (ENSMUSG00000026309.14) 158 ENSMUSG00000026309.14 ENSMUSG00000026309 ENSMUST00000189651 Ilkap protein_coding Interval_81795 chr18 64821614 64822353 + 0 NA Intergenic Intergenic -15487 ENSMUSG00000118045.1 ENSMUSG00000118045 ENSMUST00000237689 Gm29860 lincRNA Interval_51457 chr14 27687342 27691137 + 0 NA intron (ENSMUSG00000040640.11, intron 1 of 15) protein_coding-intron (ENSMUSG00000040640.11, intron 2 of 15) -25138 ENSMUSG00000114653.1 ENSMUSG00000114653 ENSMUST00000224481 Gm18398 processed_pseudogene Interval_125658 chr5 73103792 73104455 + 0 NA intron (ENSMUSG00000070733.13, intron 17 of 19) protein_coding-intron (ENSMUSG00000070733.13, intron 16 of 59) -52891 ENSMUSG00000086376.2 ENSMUSG00000086376 ENSMUST00000146728 1700071G01Rik antisense Interval_19947 chr10 111449657 111450130 + 0 NA Intergenic Intergenic -23334 ENSMUSG00000058799.16 ENSMUSG00000058799 ENSMUST00000219718 Nap1l1 protein_coding Interval_131590 chr5 138441292 138442108 + 0 NA exon (ENSMUSG00000036898.16, exon 1 of 2) protein_coding-exon (ENSMUSG00000036898.16, exon 1 of 2) 189 ENSMUSG00000036898.16 ENSMUSG00000036898 ENSMUST00000100524 Zfp157 protein_coding Interval_84265 chr19 9100850 9101303 + 0 NA Intergenic Intergenic -13118 ENSMUSG00000024653.2 ENSMUSG00000024653 ENSMUST00000025554 Scgb1a1 protein_coding Interval_69417 chr16 93071247 93071525 + 0 NA Intergenic Intergenic -1369 ENSMUSG00000098983.1 ENSMUSG00000098983 ENSMUST00000184529 Gm28003 miRNA Interval_79949 chr18 36172438 36173867 + 0 NA intron (ENSMUSG00000060275.14, intron 1 of 9) protein_coding-intron (ENSMUSG00000060275.14, intron 2 of 7) 67501 ENSMUSG00000117852.1 ENSMUSG00000117852 ENSMUST00000235667 4930471G03Rik antisense Interval_165156 chr9 44880570 44883053 + 0 NA promoter-TSS (ENSMUSG00000002028.13) protein_coding-promoter-TSS (ENSMUSG00000002028.13) 83 ENSMUSG00000110773.1 ENSMUSG00000110773 ENSMUST00000213473 Gm39326 antisense Interval_85501 chr19 27563149 27563883 + 0 NA Intergenic Intergenic 51008 ENSMUSG00000118072.1 ENSMUSG00000118072 ENSMUST00000235994 Gm50101 processed_pseudogene Interval_95735 chr2 115515478 115515679 + 0 NA intron (ENSMUSG00000085582.7, intron 1 of 3) lincRNA-intron (ENSMUSG00000085582.7, intron 1 of 3) 12166 ENSMUSG00000085582.7 ENSMUSG00000085582 ENSMUST00000125147 3110099E03Rik lincRNA Interval_78991 chr18 23706804 23708761 + 0 NA Intergenic Intergenic 44523 ENSMUSG00000086287.1 ENSMUSG00000086287 ENSMUST00000132571 Gm15972 antisense Interval_133535 chr6 6196725 6198994 + 0 NA intron (ENSMUSG00000015112.15, intron 1 of 17) protein_coding-intron (ENSMUSG00000015112.15, intron 1 of 17) -23908 ENSMUSG00000015112.15 ENSMUSG00000015112 ENSMUST00000177698 Slc25a13 protein_coding Interval_134822 chr6 31883935 31884723 + 0 NA intron (ENSMUSG00000087379.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000087379.1, intron 1 of 2) 97654 ENSMUSG00000087379.1 ENSMUSG00000087379 ENSMUST00000153328 Gm13849 lincRNA Interval_115569 chr4 100886020 100887220 + 0 NA intron (ENSMUSG00000028532.14, intron 2 of 26) protein_coding-intron (ENSMUSG00000028532.14, intron 2 of 26) -108090 ENSMUSG00000028532.14 ENSMUSG00000028532 ENSMUST00000136430 Cachd1 protein_coding Interval_121347 chr4 155143777 155144529 + 0 NA intron (ENSMUSG00000029049.14, intron 13 of 13) protein_coding-intron (ENSMUSG00000029049.14, intron 13 of 13) 44143 ENSMUSG00000029050.15 ENSMUSG00000029050 ENSMUST00000030917 Ski protein_coding Interval_129720 chr5 121948447 121949644 + 0 NA intron (ENSMUSG00000042589.18, intron 1 of 6) protein_coding-intron (ENSMUSG00000042589.18, intron 2 of 22) -76285 ENSMUSG00000105795.1 ENSMUSG00000105795 ENSMUST00000198001 Gm3970 antisense Interval_31864 chr11 103430643 103431227 + 0 NA Intergenic Intergenic 9199 ENSMUSG00000110636.1 ENSMUSG00000110636 ENSMUST00000212331 Gm39397 lincRNA Interval_78778 chr18 20583829 20584417 + 0 NA exon (ENSMUSG00000044393.15, exon 8 of 8) protein_coding-exon (ENSMUSG00000044393.15, exon 8 of 8) 25877 ENSMUSG00000044393.15 ENSMUSG00000044393 ENSMUST00000121837 Dsg2 protein_coding Interval_165759 chr9 52242159 52242621 + 0 NA Intergenic Intergenic -48809 ENSMUSG00000077796.1 ENSMUSG00000077796 ENSMUST00000104608 Gm25562 snoRNA Interval_28789 chr11 78327921 78329085 + 0 NA promoter-TSS (ENSMUSG00000041958.10) protein_coding-promoter-TSS (ENSMUSG00000041958.10) 88 ENSMUSG00000041958.10 ENSMUSG00000041958 ENSMUST00000048073 Pigs protein_coding Interval_104991 chr3 79552168 79552893 + 0 NA promoter-TSS (ENSMUSG00000089746.1) sense_intronic-promoter-TSS (ENSMUSG00000089746.1) -337 ENSMUSG00000089746.1 ENSMUSG00000089746 ENSMUST00000161319 Gm3513 sense_intronic Interval_56177 chr14 110904424 110904863 + 0 NA Intergenic Intergenic 125415 ENSMUSG00000115349.1 ENSMUSG00000115349 ENSMUST00000228159 Gm9348 processed_pseudogene Interval_15548 chr10 51272781 51273013 + 0 NA Intergenic Intergenic 34068 ENSMUSG00000111880.1 ENSMUSG00000111880 ENSMUST00000218609 Gm5040 processed_pseudogene Interval_123864 chr5 36082535 36083215 + 0 NA intron (ENSMUSG00000029093.14, intron 3 of 7) protein_coding-intron (ENSMUSG00000029093.14, intron 3 of 26) 98687 ENSMUSG00000029094.12 ENSMUSG00000029094 ENSMUST00000201482 Afap1 protein_coding Interval_55625 chr14 96482098 96482323 + 0 NA intron (ENSMUSG00000022076.10, intron 1 of 10) protein_coding-intron (ENSMUSG00000022076.10, intron 1 of 10) 36892 ENSMUSG00000022076.10 ENSMUSG00000022076 ENSMUST00000022666 Klhl1 protein_coding Interval_14548 chr10 35296217 35296527 + 0 NA Intergenic Intergenic -53629 ENSMUSG00000110837.1 ENSMUSG00000110837 ENSMUST00000217230 Gm18729 processed_pseudogene Interval_92742 chr2 65003605 65003811 + 0 NA intron (ENSMUSG00000026888.14, intron 2 of 13) protein_coding-intron (ENSMUSG00000026888.14, intron 2 of 13) -27939 ENSMUSG00000026888.14 ENSMUSG00000026888 ENSMUST00000146807 Grb14 protein_coding Interval_163629 chr9 22792024 22792842 + 0 NA intron (ENSMUSG00000035919.16, intron 19 of 22) protein_coding-intron (ENSMUSG00000035919.16, intron 18 of 21) -19598 ENSMUSG00000098940.1 ENSMUSG00000098940 ENSMUST00000184937 Gm27639 snRNA Interval_161813 chr8 122960592 122961691 + 0 NA intron (ENSMUSG00000035569.17, intron 2 of 2) protein_coding-intron (ENSMUSG00000035569.17, intron 2 of 12) 21802 ENSMUSG00000065915.1 ENSMUSG00000065915 ENSMUST00000083981 Gm24445 snRNA Interval_7494 chr1 131841009 131841281 + 0 NA exon (ENSMUSG00000013275.9, exon 6 of 11) protein_coding-exon (ENSMUSG00000013275.9, exon 6 of 11) -1695 ENSMUSG00000013275.9 ENSMUSG00000013275 ENSMUST00000146360 Slc41a1 protein_coding Interval_55014 chr14 76946981 76947731 + 0 NA Intergenic Intergenic -28893 ENSMUSG00000115303.1 ENSMUSG00000115303 ENSMUST00000227717 Gm4291 processed_pseudogene Interval_140287 chr6 116173442 116174153 + 0 NA promoter-TSS (ENSMUSG00000101878.1) processed_pseudogene-promoter-TSS (ENSMUSG00000101878.1) 60 ENSMUSG00000101878.1 ENSMUSG00000101878 ENSMUST00000173192 Gm8203 processed_pseudogene Interval_167989 chr9 75289352 75289795 + 0 NA intron (ENSMUSG00000033590.8, intron 3 of 11) protein_coding-intron (ENSMUSG00000033590.8, intron 32 of 40) 25298 ENSMUSG00000111348.1 ENSMUSG00000111348 ENSMUST00000216737 Gm19531 antisense Interval_93996 chr2 80580344 80581745 + 0 NA exon (ENSMUSG00000027002.13, exon 1 of 31) protein_coding-exon (ENSMUSG00000027002.13, exon 1 of 31) -21689 ENSMUSG00000083284.1 ENSMUSG00000083284 ENSMUST00000121557 Gm13688 processed_pseudogene Interval_76803 chr17 84180746 84182088 + 0 NA Intergenic Intergenic -4339 ENSMUSG00000117393.1 ENSMUSG00000117393 ENSMUST00000234321 Gm36279 antisense Interval_174209 chrX 139757498 139757771 + 0 NA Intergenic Intergenic 21462 ENSMUSG00000042473.8 ENSMUSG00000042473 ENSMUST00000123430 Tbc1d8b protein_coding Interval_50954 chr14 21069525 21070054 + 0 NA intron (ENSMUSG00000039197.10, intron 1 of 4) protein_coding-intron (ENSMUSG00000039197.10, intron 1 of 10) 17172 ENSMUSG00000039197.10 ENSMUSG00000039197 ENSMUST00000224974 Adk protein_coding Interval_167510 chr9 70169098 70169729 + 0 NA Intergenic Intergenic -20477 ENSMUSG00000077660.1 ENSMUSG00000077660 ENSMUST00000104472 Gm24257 snoRNA Interval_45825 chr13 58380457 58380816 + 0 NA exon (ENSMUSG00000021550.6, exon 4 of 4) protein_coding-exon (ENSMUSG00000021550.6, exon 4 of 4) 4589 ENSMUSG00000021550.6 ENSMUSG00000021550 ENSMUST00000022032 2210016F16Rik protein_coding Interval_36679 chr12 51976274 51976610 + 0 NA Intergenic Intergenic -18594 ENSMUSG00000112064.1 ENSMUSG00000112064 ENSMUST00000218223 Gm47399 processed_pseudogene Interval_97611 chr2 140539898 140540857 + 0 NA intron (ENSMUSG00000068205.14, intron 3 of 3) protein_coding-intron (ENSMUSG00000068205.14, intron 3 of 17) -99730 ENSMUSG00000065769.1 ENSMUSG00000065769 ENSMUST00000083835 Gm23846 snRNA Interval_9984 chr1 164551119 164551431 + 0 NA Intergenic Intergenic -24180 ENSMUSG00000102389.1 ENSMUSG00000102389 ENSMUST00000191913 D630023O14Rik TEC Interval_103281 chr3 37875800 37876001 + 0 NA Intergenic Intergenic -22913 ENSMUSG00000106461.1 ENSMUSG00000106461 ENSMUST00000196893 Gm20755 lincRNA Interval_51247 chr14 25520431 25520697 + 0 NA intron (ENSMUSG00000007817.15, intron 2 of 23) protein_coding-intron (ENSMUSG00000007817.15, intron 2 of 23) -13875 ENSMUSG00000093081.1 ENSMUSG00000093081 ENSMUST00000175340 Mir3075 miRNA Interval_49778 chr13 114980161 114981276 + 0 NA intron (ENSMUSG00000042284.10, intron 20 of 28) protein_coding-intron (ENSMUSG00000042284.10, intron 20 of 28) -45650 ENSMUSG00000114703.1 ENSMUSG00000114703 ENSMUST00000225140 Gm47776 processed_pseudogene Interval_3389 chr1 57847663 57847918 + 0 NA intron (ENSMUSG00000038305.15, intron 1 of 11) protein_coding-intron (ENSMUSG00000038305.15, intron 2 of 11) 69321 ENSMUSG00000091283.1 ENSMUSG00000091283 ENSMUST00000172128 Gm17234 antisense Interval_3483 chr1 58761490 58763229 + 0 NA Intergenic Intergenic -22850 ENSMUSG00000100236.1 ENSMUSG00000100236 ENSMUST00000191399 Gm3841 processed_pseudogene Interval_56317 chr14 117230115 117231133 + 0 NA intron (ENSMUSG00000058571.11, intron 2 of 9) protein_coding-intron (ENSMUSG00000058571.11, intron 2 of 8) 305093 ENSMUSG00000058571.11 ENSMUSG00000058571 ENSMUST00000078849 Gpc6 protein_coding Interval_153136 chr7 141584456 141586052 + 0 NA intron (ENSMUSG00000002957.11, intron 1 of 3) protein_coding-intron (ENSMUSG00000002957.11, intron 1 of 21) 23046 ENSMUSG00000002957.11 ENSMUSG00000002957 ENSMUST00000201261 Ap2a2 protein_coding Interval_79000 chr18 23839558 23841342 + 0 NA intron (ENSMUSG00000024277.14, intron 3 of 7) protein_coding-intron (ENSMUSG00000024277.14, intron 2 of 6) -23079 ENSMUSG00000089290.1 ENSMUSG00000089290 ENSMUST00000158665 Gm23207 snRNA Interval_18568 chr10 87860119 87861363 + 0 NA promoter-TSS (ENSMUSG00000020053.18) protein_coding-promoter-TSS (ENSMUSG00000020053.18) 1130 ENSMUSG00000020053.18 ENSMUSG00000020053 ENSMUST00000122100 Igf1 protein_coding Interval_65658 chr16 24903443 24904445 + 0 NA intron (ENSMUSG00000033306.15, intron 5 of 7) protein_coding-intron (ENSMUSG00000033306.15, intron 10 of 12) 19771 ENSMUSG00000077602.1 ENSMUSG00000077602 ENSMUST00000104414 Gm22672 snoRNA Interval_99545 chr2 163066308 163066634 + 0 NA intron (ENSMUSG00000017861.11, intron 5 of 13) protein_coding-intron (ENSMUSG00000017861.11, intron 5 of 13) -1619 ENSMUSG00000099091.1 ENSMUSG00000099091 ENSMUST00000184607 Mir7003 miRNA Interval_102710 chr3 30514380 30515881 + 0 NA intron (ENSMUSG00000027684.16, intron 2 of 8) protein_coding-intron (ENSMUSG00000027684.16, intron 2 of 8) -11317 ENSMUSG00000103738.1 ENSMUSG00000103738 ENSMUST00000195290 Gm37652 TEC Interval_97599 chr2 140280794 140281326 + 0 NA intron (ENSMUSG00000074764.11, intron 4 of 19) protein_coding-intron (ENSMUSG00000074764.11, intron 4 of 19) 15768 ENSMUSG00000074764.11 ENSMUSG00000074764 ENSMUST00000120133 Sel1l2 protein_coding Interval_106621 chr3 97867203 97869039 + 0 NA promoter-TSS (ENSMUSG00000038170.15) protein_coding-promoter-TSS (ENSMUSG00000038170.15) 32968 ENSMUSG00000086557.1 ENSMUSG00000086557 ENSMUST00000127317 Gm15999 lincRNA Interval_19275 chr10 95961481 95961680 + 0 NA intron (ENSMUSG00000036499.9, intron 1 of 1) protein_coding-intron (ENSMUSG00000036499.9, intron 1 of 28) 20930 ENSMUSG00000036499.9 ENSMUSG00000036499 ENSMUST00000218517 Eea1 protein_coding Interval_119827 chr4 140243994 140245040 + 0 NA intron (ENSMUSG00000040972.8, intron 1 of 9) protein_coding-intron (ENSMUSG00000040972.8, intron 1 of 9) 2267 ENSMUSG00000040972.8 ENSMUSG00000040972 ENSMUST00000039331 Igsf21 protein_coding Interval_113820 chr4 59062426 59063282 + 0 NA intron (ENSMUSG00000038598.9, intron 19 of 27) protein_coding-intron (ENSMUSG00000038598.9, intron 19 of 27) 27082 ENSMUSG00000038607.12 ENSMUSG00000038607 ENSMUST00000126507 Gng10 protein_coding Interval_84231 chr19 8912278 8912660 + 0 NA intron (ENSMUSG00000071650.6, intron 15 of 23) protein_coding-intron (ENSMUSG00000071650.6, intron 16 of 24) 4211 ENSMUSG00000071650.6 ENSMUSG00000071650 ENSMUST00000238063 Ganab protein_coding Interval_30933 chr11 97279349 97281135 + 0 NA exon (ENSMUSG00000001441.13, exon 1 of 23) protein_coding-exon (ENSMUSG00000001441.13, exon 1 of 23) 114 ENSMUSG00000086680.2 ENSMUSG00000086680 ENSMUST00000133160 Gm11592 antisense Interval_66914 chr16 38491670 38492141 + 0 NA intron (ENSMUSG00000075122.5, intron 6 of 6) protein_coding-intron (ENSMUSG00000075122.5, intron 6 of 6) -20660 ENSMUSG00000081605.1 ENSMUSG00000081605 ENSMUST00000117656 Gm15953 processed_pseudogene Interval_172172 chrX 8175273 8176230 + 0 NA exon (ENSMUSG00000039201.10, exon 1 of 6) protein_coding-exon (ENSMUSG00000039201.10, exon 1 of 6) 430 ENSMUSG00000039201.10 ENSMUSG00000039201 ENSMUST00000143984 Tbc1d25 protein_coding Interval_169680 chr9 100322919 100323614 + 0 NA intron (ENSMUSG00000101042.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000101042.1, intron 1 of 1) 258 ENSMUSG00000101042.1 ENSMUSG00000101042 ENSMUST00000187644 Gm28167 lincRNA Interval_167286 chr9 67035151 67035347 + 0 NA intron (ENSMUSG00000032366.15, intron 1 of 6) protein_coding-intron (ENSMUSG00000032366.15, intron 3 of 8) -2424 ENSMUSG00000032366.15 ENSMUSG00000032366 ENSMUST00000131279 Tpm1 protein_coding Interval_43868 chr13 37741324 37741491 + 0 NA Intergenic Intergenic -20341 ENSMUSG00000114800.1 ENSMUSG00000114800 ENSMUST00000224394 Gm31600 lincRNA Interval_128753 chr5 115090882 115093204 + 0 NA intron (ENSMUSG00000029550.11, intron 8 of 10) protein_coding-intron (ENSMUSG00000029550.11, intron 8 of 10) 6252 ENSMUSG00000072693.2 ENSMUSG00000072693 ENSMUST00000100848 Gm10401 protein_coding Interval_52678 chr14 48520004 48520383 + 0 NA intron (ENSMUSG00000115756.1, intron 1 of 1) protein_coding-intron (ENSMUSG00000036339.18, intron 16 of 16) -3440 ENSMUSG00000115756.1 ENSMUSG00000115756 ENSMUST00000226673 Gm49519 processed_transcript Interval_70032 chr17 4785450 4786013 + 0 NA Intergenic Intergenic 7228 ENSMUSG00000116649.1 ENSMUSG00000116649 ENSMUST00000232212 Gm49780 processed_pseudogene Interval_14611 chr10 37000615 37001306 + 0 NA intron (ENSMUSG00000019777.16, intron 6 of 6) protein_coding-intron (ENSMUSG00000019777.16, intron 13 of 13) 9194 ENSMUSG00000019777.16 ENSMUSG00000019777 ENSMUST00000123010 Hdac2 protein_coding Interval_34906 chr12 13214525 13215389 + 0 NA Intergenic Intergenic 34206 ENSMUSG00000037149.10 ENSMUSG00000037149 ENSMUST00000221623 Ddx1 protein_coding Interval_114633 chr4 83323289 83324646 + 0 NA intron (ENSMUSG00000038172.14, intron 1 of 19) protein_coding-intron (ENSMUSG00000038172.14, intron 1 of 6) -38057 ENSMUSG00000096801.1 ENSMUSG00000096801 ENSMUST00000083017 Gm23412 snRNA Interval_84783 chr19 16618219 16618891 + 0 NA intron (ENSMUSG00000046230.11, intron 73 of 73) protein_coding-intron (ENSMUSG00000046230.11, intron 71 of 71) 22063 ENSMUSG00000046230.11 ENSMUSG00000046230 ENSMUST00000225764 Vps13a protein_coding Interval_13997 chr10 25377396 25377609 + 0 NA intron (ENSMUSG00000019978.16, intron 1 of 17) protein_coding-intron (ENSMUSG00000019978.16, intron 1 of 19) 38683 ENSMUSG00000112445.1 ENSMUSG00000112445 ENSMUST00000219193 Gm47830 processed_pseudogene Interval_133396 chr6 4652888 4654669 + 0 NA Intergenic Intergenic 22651 ENSMUSG00000015189.12 ENSMUSG00000015189 ENSMUST00000204372 Casd1 protein_coding Interval_47139 chr13 76200264 76200479 + 0 NA exon (ENSMUSG00000114664.1, exon 1 of 1) TEC-exon (ENSMUSG00000114664.1, exon 1 of 1) 1380 ENSMUSG00000114664.1 ENSMUSG00000114664 ENSMUST00000225364 Gm48639 TEC Interval_86671 chr19 42443680 42444337 + 0 NA Intergenic Intergenic -12223 ENSMUSG00000042401.8 ENSMUSG00000042401 ENSMUST00000238182 Crtac1 protein_coding Interval_134886 chr6 33153920 33154388 + 0 NA Intergenic Intergenic -65405 ENSMUSG00000087777.1 ENSMUSG00000087777 ENSMUST00000157152 Gm22321 snRNA Interval_115448 chr4 99039209 99039702 + 0 NA intron (ENSMUSG00000028553.12, intron 3 of 4) protein_coding-intron (ENSMUSG00000028556.15, intron 14 of 48) 6276 ENSMUSG00000028553.12 ENSMUSG00000028553 ENSMUST00000125546 Angptl3 protein_coding Interval_122038 chr5 14401376 14402206 + 0 NA Intergenic Intergenic 138061 ENSMUSG00000097976.1 ENSMUSG00000097976 ENSMUST00000182496 Gm26918 antisense Interval_52684 chr14 48580125 48581150 + 0 NA Intergenic Intergenic -9962 ENSMUSG00000115636.1 ENSMUSG00000115636 ENSMUST00000228323 Gm49120 lincRNA Interval_151234 chr7 119942064 119942411 + 0 NA intron (ENSMUSG00000052273.4, intron 53 of 60) protein_coding-intron (ENSMUSG00000052273.4, intron 53 of 60) -27584 ENSMUSG00000088172.1 ENSMUSG00000088172 ENSMUST00000157547 Gm25217 snRNA Interval_103614 chr3 51195211 51196393 + 0 NA Intergenic Intergenic -36115 ENSMUSG00000103313.1 ENSMUSG00000103313 ENSMUST00000195382 Gm38357 TEC Interval_121501 chr4 156227507 156228949 + 0 NA TTS (ENSMUSG00000078485.3) protein_coding-TTS (ENSMUSG00000078485.3) 272 ENSMUSG00000078485.3 ENSMUSG00000078485 ENSMUST00000105569 Plekhn1 protein_coding Interval_19935 chr10 111368811 111370242 + 0 NA Intergenic Intergenic 32402 ENSMUSG00000112246.1 ENSMUSG00000112246 ENSMUST00000219123 Gm40761 lincRNA Interval_47597 chr13 89739046 89743102 + 0 NA promoter-TSS (ENSMUSG00000021614.16) protein_coding-promoter-TSS (ENSMUSG00000021614.16) -677 ENSMUSG00000021614.16 ENSMUSG00000021614 ENSMUST00000162715 Vcan protein_coding Interval_148222 chr7 79961728 79962430 + 0 NA Intergenic Intergenic 12892 ENSMUSG00000077059.1 ENSMUSG00000077059 ENSMUST00000103871 Gm24541 miRNA Interval_94531 chr2 91971387 91972469 + 0 NA intron (ENSMUSG00000040479.12, intron 1 of 30) protein_coding-intron (ENSMUSG00000040479.12, intron 1 of 30) -6328 ENSMUSG00000040479.12 ENSMUSG00000040479 ENSMUST00000126473 Dgkz protein_coding Interval_117007 chr4 118985143 118985654 + 0 NA intron (ENSMUSG00000087238.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000087238.1, intron 1 of 1) -1616 ENSMUSG00000082143.1 ENSMUSG00000082143 ENSMUST00000122207 Gm12864 processed_pseudogene Interval_125789 chr5 74168095 74169151 + 0 NA Intergenic Intergenic 7427 ENSMUSG00000106735.1 ENSMUSG00000106735 ENSMUST00000200757 A330058E17Rik TEC Interval_93843 chr2 77376484 77377149 + 0 NA Intergenic Intergenic 41457 ENSMUSG00000082006.1 ENSMUSG00000082006 ENSMUST00000122325 Gm13649 processed_pseudogene Interval_61911 chr15 85151442 85152301 + 0 NA intron (ENSMUSG00000115924.1, intron 2 of 2) lincRNA-intron (ENSMUSG00000115924.1, intron 2 of 2) 4261 ENSMUSG00000115924.1 ENSMUSG00000115924 ENSMUST00000229478 Gm19277 lincRNA Interval_104067 chr3 58120086 58120476 + 0 NA intron (ENSMUSG00000104586.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000104586.1, intron 1 of 1) -16034 ENSMUSG00000069008.3 ENSMUSG00000069008 ENSMUST00000091117 Gm5537 processed_pseudogene Interval_102788 chr3 31023075 31024254 + 0 NA intron (ENSMUSG00000037643.14, intron 2 of 7) protein_coding-intron (ENSMUSG00000037643.14, intron 2 of 17) -14786 ENSMUSG00000037643.14 ENSMUSG00000037643 ENSMUST00000130706 Prkci protein_coding Interval_154722 chr8 22858656 22860531 + 0 NA promoter-TSS (ENSMUSG00000031540.14) protein_coding-promoter-TSS (ENSMUSG00000031540.14) 58 ENSMUSG00000031540.14 ENSMUSG00000031540 ENSMUST00000130718 Kat6a protein_coding Interval_174082 chrX 134508136 134508587 + 0 NA Intergenic Intergenic 11551 ENSMUSG00000088275.1 ENSMUSG00000088275 ENSMUST00000157650 Gm23124 snRNA Interval_109142 chr3 136704444 136705471 + 0 NA intron (ENSMUSG00000028161.17, intron 1 of 12) protein_coding-intron (ENSMUSG00000028161.17, intron 1 of 13) 3746 ENSMUSG00000106596.1 ENSMUSG00000106596 ENSMUST00000200507 Gm42822 TEC Interval_140074 chr6 113842985 113843638 + 0 NA intron (ENSMUSG00000030302.16, intron 3 of 3) protein_coding-intron (ENSMUSG00000030302.16, intron 1 of 19) -43627 ENSMUSG00000108297.1 ENSMUSG00000108297 ENSMUST00000204957 Gm44167 sense_intronic Interval_122960 chr5 27850598 27850890 + 0 NA intron (ENSMUSG00000039106.6, intron 1 of 1) protein_coding-intron (ENSMUSG00000039106.6, intron 1 of 1) 8595 ENSMUSG00000039106.6 ENSMUSG00000039106 ENSMUST00000036227 Htr5a protein_coding Interval_2920 chr1 50371117 50371356 + 0 NA Intergenic Intergenic 26843 ENSMUSG00000100451.1 ENSMUSG00000100451 ENSMUST00000191457 Gm29665 lincRNA Interval_35038 chr12 16819579 16820198 + 0 NA promoter-TSS (ENSMUSG00000057469.8) protein_coding-promoter-TSS (ENSMUSG00000057469.8) -373 ENSMUSG00000057469.8 ENSMUSG00000057469 ENSMUST00000221600 E2f6 protein_coding Interval_88431 chr2 5014713 5015096 + 0 NA Intergenic Intergenic -20066 ENSMUSG00000026669.14 ENSMUSG00000026669 ENSMUST00000125851 Mcm10 protein_coding Interval_66983 chr16 38996427 38997625 + 0 NA intron (ENSMUSG00000022790.14, intron 1 of 6) protein_coding-intron (ENSMUSG00000022790.14, intron 1 of 6) 69817 ENSMUSG00000089607.1 ENSMUSG00000089607 ENSMUST00000158982 Gm22500 snRNA Interval_144150 chr7 19668840 19669705 + 0 NA Intergenic Intergenic 8669 ENSMUSG00000002992.17 ENSMUSG00000002992 ENSMUST00000134116 Apoc2 protein_coding Interval_33277 chr11 115670857 115672067 + 0 NA intron (ENSMUSG00000059923.13, intron 2 of 3) protein_coding-intron (ENSMUSG00000059923.13, intron 2 of 5) -13903 ENSMUSG00000084277.1 ENSMUSG00000084277 ENSMUST00000118223 Gm11702 processed_pseudogene Interval_98240 chr2 150321108 150321352 + 0 NA intron (ENSMUSG00000095315.2, intron 1 of 3) protein_coding-intron (ENSMUSG00000063364.10, intron 3 of 3) 9799 ENSMUSG00000095315.2 ENSMUSG00000095315 ENSMUST00000133235 Gm10130 protein_coding Interval_62102 chr15 86673233 86673927 + 0 NA Intergenic Intergenic -30711 ENSMUSG00000116040.1 ENSMUSG00000116040 ENSMUST00000229409 Gm49464 lincRNA Interval_88120 chr19 59371181 59372454 + 0 NA Intergenic Intergenic -17967 ENSMUSG00000110210.1 ENSMUSG00000110210 ENSMUST00000211358 Gm33756 lincRNA Interval_74218 chr17 47520839 47523237 + 0 NA intron (ENSMUSG00000034165.16, intron 1 of 6) protein_coding-intron (ENSMUSG00000034165.16, intron 1 of 6) -19766 ENSMUSG00000023980.7 ENSMUSG00000023980 ENSMUST00000233675 Taf8 protein_coding Interval_50842 chr14 20159171 20159870 + 0 NA intron (ENSMUSG00000023243.9, intron 1 of 4) protein_coding-intron (ENSMUSG00000023243.9, intron 1 of 4) -14226 ENSMUSG00000023243.9 ENSMUSG00000023243 ENSMUST00000225552 Kcnk5 protein_coding Interval_94870 chr2 98765417 98765773 + 0 NA Intergenic Intergenic -98294 ENSMUSG00000075014.1 ENSMUSG00000075014 ENSMUST00000099683 Gm10800 protein_coding Interval_132336 chr5 144270453 144270651 + 0 NA intron (ENSMUSG00000038859.7, intron 12 of 13) protein_coding-intron (ENSMUSG00000038859.7, intron 12 of 13) -8323 ENSMUSG00000086894.2 ENSMUSG00000086894 ENSMUST00000198873 Gm15708 sense_intronic Interval_131109 chr5 135201293 135201735 + 0 NA TTS (ENSMUSG00000002748.7) protein_coding-TTS (ENSMUSG00000002748.7) 3382 ENSMUSG00000002748.7 ENSMUSG00000002748 ENSMUST00000136947 Baz1b protein_coding Interval_31104 chr11 98155705 98157256 + 0 NA exon (ENSMUSG00000018160.15, exon 17 of 17) protein_coding-exon (ENSMUSG00000018160.15, exon 17 of 17) 4542 ENSMUSG00000018160.15 ENSMUSG00000018160 ENSMUST00000129557 Med1 protein_coding Interval_143498 chr7 10757157 10758184 + 0 NA Intergenic Intergenic -3306 ENSMUSG00000059206.4 ENSMUSG00000059206 ENSMUST00000227702 Vmn1r71 protein_coding Interval_142711 chr6 145094192 145095334 + 0 NA Intergenic Intergenic 38374 ENSMUSG00000086643.1 ENSMUSG00000086643 ENSMUST00000141440 Gm15687 antisense Interval_135297 chr6 38147129 38148314 + 0 NA promoter-TSS (ENSMUSG00000063455.16) protein_coding-promoter-TSS (ENSMUSG00000063455.16) 29338 ENSMUSG00000087924.1 ENSMUSG00000087924 ENSMUST00000157299 Gm23231 snRNA Interval_110534 chr4 3660047 3662180 + 0 NA intron (ENSMUSG00000085394.1, intron 3 of 3) lincRNA-intron (ENSMUSG00000085394.1, intron 3 of 3) 4605 ENSMUSG00000085394.1 ENSMUSG00000085394 ENSMUST00000139600 2210414B05Rik lincRNA Interval_85350 chr19 25086895 25087095 + 0 NA intron (ENSMUSG00000052085.7, intron 7 of 47) protein_coding-intron (ENSMUSG00000052085.7, intron 7 of 47) 34382 ENSMUSG00000052085.7 ENSMUSG00000052085 ENSMUST00000236576 Dock8 protein_coding Interval_161330 chr8 119785793 119786254 + 0 NA Intergenic Intergenic -7629 ENSMUSG00000034105.9 ENSMUSG00000034105 ENSMUST00000212534 Meak7 protein_coding Interval_72788 chr17 32188898 32190550 + 0 NA promoter-TSS (ENSMUSG00000037577.13) protein_coding-promoter-TSS (ENSMUSG00000037577.13) -175 ENSMUSG00000037577.13 ENSMUSG00000037577 ENSMUST00000162117 Ephx3 protein_coding Interval_97456 chr2 136741438 136742833 + 0 NA intron (ENSMUSG00000027273.13, intron 1 of 2) protein_coding-intron (ENSMUSG00000027273.13, intron 1 of 7) 2480 ENSMUSG00000082849.1 ENSMUSG00000082849 ENSMUST00000121662 Gm14053 processed_pseudogene Interval_40647 chr12 106357808 106358704 + 0 NA Intergenic Intergenic 30888 ENSMUSG00000091280.1 ENSMUSG00000091280 ENSMUST00000164367 Gm17032 lincRNA Interval_159228 chr8 91966718 91967910 + 0 NA Intergenic Intergenic 24555 ENSMUSG00000109696.1 ENSMUSG00000109696 ENSMUST00000210361 Gm36670 lincRNA Interval_67421 chr16 48547545 48548365 + 0 NA intron (ENSMUSG00000022652.7, intron 7 of 8) protein_coding-intron (ENSMUSG00000022652.7, intron 14 of 26) 68323 ENSMUSG00000022652.7 ENSMUSG00000022652 ENSMUST00000232195 Morc1 protein_coding Interval_9674 chr1 160943717 160944390 + 0 NA intron (ENSMUSG00000040423.11, intron 7 of 20) protein_coding-intron (ENSMUSG00000040423.11, intron 5 of 18) 28729 ENSMUSG00000103739.1 ENSMUSG00000103739 ENSMUST00000195401 Gm37653 TEC Interval_116741 chr4 117027673 117027907 + 0 NA TTS (ENSMUSG00000088349.1) snRNA-TTS (ENSMUSG00000088349.1) 579 ENSMUSG00000088349.1 ENSMUSG00000088349 ENSMUST00000157724 Gm22335 snRNA Interval_77027 chr17 85766283 85767349 + 0 NA Intergenic Intergenic 57228 ENSMUSG00000100345.1 ENSMUSG00000100345 ENSMUST00000186162 Gm29418 lincRNA Interval_52338 chr14 45241530 45242089 + 0 NA intron (ENSMUSG00000049092.11, intron 1 of 6) protein_coding-intron (ENSMUSG00000049092.11, intron 1 of 6) 22092 ENSMUSG00000049092.11 ENSMUSG00000049092 ENSMUST00000151749 Gpr137c protein_coding Interval_56448 chr14 118827631 118828140 + 0 NA promoter-TSS (ENSMUSG00000077661.1) rRNA-promoter-TSS (ENSMUSG00000077661.1) -854 ENSMUSG00000077661.1 ENSMUSG00000077661 ENSMUST00000104473 n-R5s51 rRNA Interval_159406 chr8 94379365 94379609 + 0 NA exon (ENSMUSG00000090105.2, exon 3 of 3) antisense-exon (ENSMUSG00000090105.2, exon 3 of 3) 1615 ENSMUSG00000089712.2 ENSMUSG00000089712 ENSMUST00000159142 Gm15889 lincRNA Interval_109992 chr3 152346168 152347070 + 0 NA exon (ENSMUSG00000025437.15, exon 1 of 24) protein_coding-exon (ENSMUSG00000025437.15, exon 1 of 24) -6235 ENSMUSG00000054942.13 ENSMUSG00000054942 ENSMUST00000200241 Miga1 protein_coding Interval_156186 chr8 45782912 45783156 + 0 NA TTS (ENSMUSG00000110411.1) TEC-TTS (ENSMUSG00000110411.1) 3806 ENSMUSG00000110411.1 ENSMUSG00000110411 ENSMUST00000209931 Gm45457 TEC Interval_116018 chr4 107026557 107027355 + 0 NA intron (ENSMUSG00000061887.14, intron 5 of 10) protein_coding-intron (ENSMUSG00000061887.14, intron 5 of 17) -4457 ENSMUSG00000085581.1 ENSMUSG00000085581 ENSMUST00000129617 Gm12786 antisense Interval_138184 chr6 86009845 86010973 + 0 NA Intergenic Intergenic -5762 ENSMUSG00000030001.4 ENSMUSG00000030001 ENSMUST00000032070 Figla protein_coding Interval_146847 chr7 53186575 53186797 + 0 NA Intergenic Intergenic 259616 ENSMUSG00000070203.1 ENSMUSG00000070203 ENSMUST00000093693 Gm22444 snRNA Interval_134021 chr6 17791396 17791616 + 0 NA intron (ENSMUSG00000029534.17, intron 1 of 15) protein_coding-intron (ENSMUSG00000029534.17, intron 1 of 14) -42606 ENSMUSG00000106801.1 ENSMUSG00000106801 ENSMUST00000202649 Gm42852 TEC Interval_110170 chr3 153943977 153945063 + 0 NA promoter-TSS (ENSMUSG00000062908.12) protein_coding-promoter-TSS (ENSMUSG00000062908.12) -6711 ENSMUSG00000062908.12 ENSMUSG00000062908 ENSMUST00000135724 Acadm protein_coding Interval_49555 chr13 112937729 112937943 + 0 NA exon (ENSMUSG00000114477.1, exon 1 of 1) processed_pseudogene-exon (ENSMUSG00000114477.1, exon 1 of 1) 251 ENSMUSG00000114477.1 ENSMUSG00000114477 ENSMUST00000225929 Gm8795 processed_pseudogene Interval_78736 chr18 19964111 19964356 + 0 NA intron (ENSMUSG00000059898.9, intron 15 of 16) protein_coding-intron (ENSMUSG00000059898.9, intron 15 of 16) 37722 ENSMUSG00000059898.9 ENSMUSG00000059898 ENSMUST00000223946 Dsc3 protein_coding Interval_73357 chr17 36680573 36680821 + 0 NA Intergenic Intergenic -8478 ENSMUSG00000037334.2 ENSMUSG00000037334 ENSMUST00000041662 H2-M1 protein_coding Interval_169864 chr9 102607207 102607707 + 0 NA intron (ENSMUSG00000032534.18, intron 7 of 14) protein_coding-intron (ENSMUSG00000032534.18, intron 7 of 16) 18524 ENSMUSG00000032534.18 ENSMUSG00000032534 ENSMUST00000162297 Cep63 protein_coding Interval_112103 chr4 34701417 34702485 + 0 NA intron (ENSMUSG00000028294.15, intron 4 of 5) protein_coding-intron (ENSMUSG00000028294.15, intron 11 of 12) -14555 ENSMUSG00000028293.14 ENSMUSG00000028293 ENSMUST00000154020 Slc35a1 protein_coding Interval_46933 chr13 73516824 73517564 + 0 NA TTS (ENSMUSG00000021608.15) protein_coding-TTS (ENSMUSG00000021608.15) -19553 ENSMUSG00000021609.6 ENSMUSG00000021609 ENSMUST00000022100 Slc6a3 protein_coding Interval_126437 chr5 88575846 88576352 + 0 NA intron (ENSMUSG00000029291.11, intron 1 of 17) protein_coding-intron (ENSMUSG00000029291.11, intron 1 of 12) 21637 ENSMUSG00000070697.4 ENSMUSG00000070697 ENSMUST00000090413 Utp3 protein_coding Interval_58690 chr15 37070160 37072846 + 0 NA Intergenic Intergenic 63920 ENSMUSG00000097259.2 ENSMUSG00000097259 ENSMUST00000227544 Gm26766 antisense Interval_78158 chr18 9494817 9496006 + 0 NA promoter-TSS (ENSMUSG00000117503.1) processed_pseudogene-promoter-TSS (ENSMUSG00000117503.1) -210 ENSMUSG00000117503.1 ENSMUSG00000117503 ENSMUST00000234250 Gm7527 processed_pseudogene Interval_163871 chr9 27333748 27335827 + 0 NA TTS (ENSMUSG00000034275.18) protein_coding-TTS (ENSMUSG00000034275.18) 35583 ENSMUSG00000034275.18 ENSMUSG00000034275 ENSMUST00000214187 Igsf9b protein_coding Interval_78375 chr18 12269926 12270286 + 0 NA intron (ENSMUSG00000057766.14, intron 3 of 5) protein_coding-intron (ENSMUSG00000057766.14, intron 6 of 9) 12239 ENSMUSG00000057766.14 ENSMUSG00000057766 ENSMUST00000142066 Ankrd29 protein_coding Interval_154648 chr8 22306929 22307130 + 0 NA intron (ENSMUSG00000031481.8, intron 7 of 28) protein_coding-intron (ENSMUSG00000031481.8, intron 7 of 27) 23588 ENSMUSG00000031481.8 ENSMUSG00000031481 ENSMUST00000077194 Tpte protein_coding Interval_72193 chr17 28517486 28518784 + 0 NA promoter-TSS (ENSMUSG00000024222.17) protein_coding-promoter-TSS (ENSMUSG00000024222.17) -621 ENSMUSG00000024222.17 ENSMUSG00000024222 ENSMUST00000147716 Fkbp5 protein_coding Interval_38683 chr12 81009147 81010013 + 0 NA Intergenic Intergenic -17248 ENSMUSG00000021136.13 ENSMUSG00000021136 ENSMUST00000129362 Smoc1 protein_coding Interval_44462 chr13 44974422 44974715 + 0 NA intron (ENSMUSG00000057531.14, intron 4 of 8) protein_coding-intron (ENSMUSG00000057531.14, intron 5 of 9) 27484 ENSMUSG00000057531.14 ENSMUSG00000057531 ENSMUST00000223524 Dtnbp1 protein_coding Interval_62111 chr15 86925495 86925906 + 0 NA Intergenic Intergenic -1618 ENSMUSG00000115957.1 ENSMUSG00000115957 ENSMUST00000229974 Gm49466 lincRNA Interval_122933 chr5 27485918 27486311 + 0 NA intron (ENSMUSG00000061576.15, intron 5 of 25) protein_coding-intron (ENSMUSG00000061576.15, intron 5 of 25) 15248 ENSMUSG00000048703.9 ENSMUSG00000048703 ENSMUST00000124535 Speer4b protein_coding Interval_157322 chr8 69288338 69289630 + 0 NA intron (ENSMUSG00000079038.3, intron 1 of 5) protein_coding-intron (ENSMUSG00000079038.3, intron 1 of 1) 17904 ENSMUSG00000079038.3 ENSMUSG00000079038 ENSMUST00000078257 D130040H23Rik protein_coding Interval_73777 chr17 43557731 43559407 + 0 NA Intergenic Intergenic -10104 ENSMUSG00000023913.17 ENSMUSG00000023913 ENSMUST00000163489 Pla2g7 protein_coding Interval_154969 chr8 25359589 25359816 + 0 NA Intergenic Intergenic -39318 ENSMUSG00000110172.1 ENSMUSG00000110172 ENSMUST00000211376 Gm39147 transcribed_processed_pseudogene Interval_82531 chr18 74981038 74981998 + 0 NA promoter-TSS (ENSMUSG00000118384.1) lincRNA-promoter-TSS (ENSMUSG00000118384.1) 29 ENSMUSG00000118384.1 ENSMUSG00000118384 ENSMUST00000237753 9030625G05Rik lincRNA Interval_13293 chr10 14281988 14282282 + 0 NA Intergenic Intergenic -14828 ENSMUSG00000112679.1 ENSMUSG00000112679 ENSMUST00000219975 Gm40603 lincRNA Interval_98885 chr2 155774914 155776204 + 0 NA exon (ENSMUSG00000027612.7, exon 1 of 9) protein_coding-exon (ENSMUSG00000027612.7, exon 1 of 9) 24409 ENSMUSG00000027611.12 ENSMUSG00000027611 ENSMUST00000143493 Procr protein_coding Interval_142893 chr6 146757000 146757288 + 0 NA intron (ENSMUSG00000001630.13, intron 1 of 1) protein_coding-intron (ENSMUSG00000001630.13, intron 1 of 13) -5437 ENSMUSG00000108108.1 ENSMUSG00000108108 ENSMUST00000203084 Gm44270 TEC Interval_19116 chr10 94716012 94716504 + 0 NA intron (ENSMUSG00000020024.7, intron 1 of 3) protein_coding-intron (ENSMUSG00000020024.7, intron 1 of 15) 27540 ENSMUSG00000020024.7 ENSMUSG00000020024 ENSMUST00000218076 Cep83 protein_coding Interval_61786 chr15 84130420 84132492 + 0 NA intron (ENSMUSG00000115925.1, intron 2 of 3) lincRNA-intron (ENSMUSG00000115925.1, intron 2 of 3) 4152 ENSMUSG00000115925.1 ENSMUSG00000115925 ENSMUST00000231019 Gm33432 lincRNA Interval_42676 chr13 17872477 17873087 + 0 NA Intergenic Intergenic -22073 ENSMUSG00000114177.1 ENSMUSG00000114177 ENSMUST00000221786 Gm18362 processed_pseudogene Interval_69327 chr16 92231953 92232282 + 0 NA Intergenic Intergenic -24629 ENSMUSG00000116878.1 ENSMUSG00000116878 ENSMUST00000231551 Gm29880 processed_transcript Interval_150727 chr7 113881349 113881567 + 0 NA intron (ENSMUSG00000038156.16, intron 4 of 5) protein_coding-intron (ENSMUSG00000038156.16, intron 4 of 15) 115284 ENSMUSG00000038156.16 ENSMUSG00000038156 ENSMUST00000084696 Spon1 protein_coding Interval_61099 chr15 79219406 79219813 + 0 NA intron (ENSMUSG00000075555.12, intron 3 of 3) processed_transcript-intron (ENSMUSG00000075555.12, intron 3 of 3) -9782 ENSMUSG00000116121.1 ENSMUSG00000116121 ENSMUST00000053926 Gm49486 protein_coding Interval_74336 chr17 49047556 49048610 + 0 NA intron (ENSMUSG00000040490.4, intron 1 of 2) protein_coding-intron (ENSMUSG00000040490.4, intron 1 of 2) 48350 ENSMUSG00000105424.1 ENSMUSG00000105424 ENSMUST00000200509 Gm44304 miRNA Interval_90169 chr2 28707931 28708864 + 0 NA intron (ENSMUSG00000026807.8, intron 3 of 7) protein_coding-intron (ENSMUSG00000026807.8, intron 2 of 12) -8723 ENSMUSG00000026809.15 ENSMUSG00000026809 ENSMUST00000145014 Spaca9 protein_coding Interval_161059 chr8 117224157 117225155 + 0 NA Intergenic Intergenic 66519 ENSMUSG00000052557.11 ENSMUSG00000052557 ENSMUST00000162997 Gan protein_coding Interval_45170 chr13 52915376 52915718 + 0 NA intron (ENSMUSG00000021460.17, intron 3 of 3) protein_coding-intron (ENSMUSG00000021460.17, intron 3 of 9) -2601 ENSMUSG00000021460.17 ENSMUSG00000021460 ENSMUST00000151469 Auh protein_coding Interval_27320 chr11 66188828 66189121 + 0 NA intron (ENSMUSG00000084967.1, intron 1 of 2) processed_transcript-intron (ENSMUSG00000084967.1, intron 1 of 2) 20939 ENSMUSG00000084967.1 ENSMUSG00000084967 ENSMUST00000144922 Gm12296 processed_transcript Interval_161152 chr8 117823176 117823588 + 0 NA Intergenic Intergenic 21320 ENSMUSG00000074065.4 ENSMUSG00000074065 ENSMUST00000098368 Gm10617 pseudogene Interval_166882 chr9 63635190 63635565 + 0 NA exon (ENSMUSG00000037257.8, exon 6 of 10) protein_coding-exon (ENSMUSG00000037257.8, exon 6 of 10) 18389 ENSMUSG00000037257.8 ENSMUSG00000037257 ENSMUST00000213702 Aagab protein_coding Interval_40834 chr12 108751944 108753061 + 0 NA Intergenic Intergenic 10468 ENSMUSG00000112971.1 ENSMUSG00000112971 ENSMUST00000222233 Gm33682 lincRNA Interval_87186 chr19 46706949 46708119 + 0 NA promoter-TSS (ENSMUSG00000003559.8) protein_coding-promoter-TSS (ENSMUSG00000003559.8) -434 ENSMUSG00000003559.8 ENSMUSG00000003559 ENSMUST00000235266 As3mt protein_coding Interval_75409 chr17 66413766 66414667 + 0 NA promoter-TSS (ENSMUSG00000093686.1) processed_pseudogene-promoter-TSS (ENSMUSG00000093686.1) -232 ENSMUSG00000093686.1 ENSMUSG00000093686 ENSMUST00000177415 Gm4705 processed_pseudogene Interval_111921 chr4 32561387 32563360 + 0 NA TTS (ENSMUSG00000086150.1) antisense-TTS (ENSMUSG00000086150.1) 9335 ENSMUSG00000086150.1 ENSMUSG00000086150 ENSMUST00000149084 Bach2os antisense Interval_29566 chr11 84936062 84936470 + 0 NA Intergenic Intergenic -19942 ENSMUSG00000020526.12 ENSMUSG00000020526 ENSMUST00000156046 Znhit3 protein_coding Interval_82498 chr18 74642794 74643362 + 0 NA intron (ENSMUSG00000025885.18, intron 3 of 3) protein_coding-intron (ENSMUSG00000025885.18, intron 9 of 38) -70541 ENSMUSG00000025885.18 ENSMUSG00000025885 ENSMUST00000154986 Myo5b protein_coding Interval_90984 chr2 33920229 33921202 + 0 NA Intergenic Intergenic 21430 ENSMUSG00000085987.2 ENSMUSG00000085987 ENSMUST00000134271 Gm13403 lincRNA Interval_14903 chr10 40970944 40971161 + 0 NA Intergenic Intergenic -64143 ENSMUSG00000111098.1 ENSMUSG00000111098 ENSMUST00000214667 Gm48057 lincRNA Interval_131949 chr5 140993797 140994069 + 0 NA intron (ENSMUSG00000036526.8, intron 1 of 2) protein_coding-intron (ENSMUSG00000036526.8, intron 1 of 24) 6538 ENSMUSG00000036526.8 ENSMUSG00000036526 ENSMUST00000199091 Card11 protein_coding Interval_53617 chr14 60138136 60138768 + 0 NA intron (ENSMUSG00000021983.16, intron 1 of 6) protein_coding-intron (ENSMUSG00000021983.16, intron 1 of 6) -2611 ENSMUSG00000075288.2 ENSMUSG00000075288 ENSMUST00000100019 Gm6913 processed_pseudogene Interval_138572 chr6 89467336 89467811 + 0 NA intron (ENSMUSG00000030086.16, intron 4 of 5) protein_coding-intron (ENSMUSG00000030086.16, intron 4 of 7) 59882 ENSMUSG00000107680.1 ENSMUSG00000107680 ENSMUST00000205126 Gm43903 TEC Interval_85613 chr19 29074677 29075512 + 0 NA Intergenic Intergenic 7747 ENSMUSG00000118038.1 ENSMUSG00000118038 ENSMUST00000235636 Gm9895 lincRNA Interval_569 chr1 7533204 7534051 + 0 NA Intergenic Intergenic 35659 ENSMUSG00000103067.1 ENSMUSG00000103067 ENSMUST00000194886 Gm30414 lincRNA Interval_18450 chr10 86087616 86087812 + 0 NA intron (ENSMUSG00000059602.14, intron 7 of 8) protein_coding-intron (ENSMUSG00000059602.14, intron 7 of 13) -8145 ENSMUSG00000112493.1 ENSMUSG00000112493 ENSMUST00000218077 4930486F22Rik antisense Interval_129094 chr5 117367745 117368157 + 0 NA intron (ENSMUSG00000029364.15, intron 2 of 2) protein_coding-intron (ENSMUSG00000029364.15, intron 2 of 8) -7701 ENSMUSG00000029364.15 ENSMUSG00000029364 ENSMUST00000136895 Wsb2 protein_coding Interval_134991 chr6 34371651 34372203 + 0 NA Intergenic Intergenic 8518 ENSMUSG00000081196.1 ENSMUSG00000081196 ENSMUST00000118862 Gm13858 unprocessed_pseudogene Interval_147082 chr7 62227881 62228109 + 0 NA Intergenic Intergenic -18516 ENSMUSG00000045813.7 ENSMUSG00000045813 ENSMUST00000054860 Gm9801 lincRNA Interval_107966 chr3 117794218 117795383 + 0 NA intron (ENSMUSG00000028007.13, intron 7 of 7) protein_coding-intron (ENSMUSG00000028007.13, intron 8 of 8) 51908 ENSMUSG00000028007.13 ENSMUSG00000028007 ENSMUST00000196421 Snx7 protein_coding Interval_55595 chr14 94598044 94598796 + 0 NA Intergenic Intergenic -89626 ENSMUSG00000115638.1 ENSMUSG00000115638 ENSMUST00000227114 Gm18074 processed_pseudogene Interval_44647 chr13 46919954 46920201 + 0 NA intron (ENSMUSG00000021375.11, intron 2 of 2) protein_coding-intron (ENSMUSG00000021375.11, intron 2 of 37) 17488 ENSMUSG00000084466.1 ENSMUSG00000084466 ENSMUST00000122517 Gm22960 snRNA Interval_13646 chr10 20378773 20379259 + 0 NA Intergenic Intergenic -13579 ENSMUSG00000111351.1 ENSMUSG00000111351 ENSMUST00000213596 Gm48537 processed_pseudogene Interval_19586 chr10 104218812 104219099 + 0 NA Intergenic Intergenic 5944 ENSMUSG00000088343.1 ENSMUSG00000088343 ENSMUST00000157718 Gm22339 snRNA Interval_149873 chr7 102137050 102138075 + 0 NA intron (ENSMUSG00000063550.8, intron 22 of 22) protein_coding-intron (ENSMUSG00000063550.8, intron 22 of 22) -20734 ENSMUSG00000066279.3 ENSMUSG00000066279 ENSMUST00000211408 Chrna10 protein_coding Interval_135140 chr6 36671461 36672147 + 0 NA Intergenic Intergenic -27593 ENSMUSG00000080336.1 ENSMUSG00000080336 ENSMUST00000116686 Gm25111 miRNA Interval_24991 chr11 42646765 42646963 + 0 NA Intergenic Intergenic 225514 ENSMUSG00000007653.12 ENSMUSG00000007653 ENSMUST00000192403 Gabrb2 protein_coding Interval_125736 chr5 73683377 73684456 + 0 NA Intergenic Intergenic 24655 ENSMUSG00000029155.16 ENSMUSG00000029155 ENSMUST00000178631 Spata18 protein_coding Interval_86436 chr19 40498494 40498681 + 0 NA intron (ENSMUSG00000025006.18, intron 1 of 23) protein_coding-intron (ENSMUSG00000025006.18, intron 1 of 21) 62471 ENSMUSG00000096592.1 ENSMUSG00000096592 ENSMUST00000120920 Gm15801 processed_pseudogene Interval_86969 chr19 45257229 45257903 + 0 NA Intergenic Intergenic -21754 ENSMUSG00000025216.9 ENSMUSG00000025216 ENSMUST00000099401 Lbx1 protein_coding Interval_14375 chr10 31827748 31828838 + 0 NA intron (ENSMUSG00000069670.8, intron 4 of 6) protein_coding-intron (ENSMUSG00000069670.8, intron 4 of 6) -39619 ENSMUSG00000112866.1 ENSMUSG00000112866 ENSMUST00000219333 Gm47704 TEC Interval_84542 chr19 12541317 12542452 + 0 NA intron (ENSMUSG00000086213.2, intron 2 of 4) processed_transcript-intron (ENSMUSG00000086213.2, intron 2 of 4) -1061 ENSMUSG00000114761.1 ENSMUSG00000114761 ENSMUST00000224027 Gm47242 lincRNA Interval_39427 chr12 87341394 87341590 + 0 NA intron (ENSMUSG00000021036.10, intron 2 of 5) protein_coding-intron (ENSMUSG00000021036.10, intron 8 of 11) -12879 ENSMUSG00000021036.10 ENSMUSG00000021036 ENSMUST00000167911 Sptlc2 protein_coding Interval_69244 chr16 91632353 91632663 + 0 NA TTS (ENSMUSG00000022962.15) protein_coding-TTS (ENSMUSG00000022962.15) -9491 ENSMUSG00000022962.15 ENSMUSG00000022962 ENSMUST00000231775 Gart protein_coding Interval_39190 chr12 85694603 85695260 + 0 NA intron (ENSMUSG00000034266.6, intron 2 of 2) protein_coding-intron (ENSMUSG00000034266.6, intron 2 of 2) 5639 ENSMUSG00000034266.6 ENSMUSG00000034266 ENSMUST00000222781 Batf protein_coding Interval_49934 chr13 118488385 118488687 + 0 NA Intergenic Intergenic 22377 ENSMUSG00000114668.1 ENSMUSG00000114668 ENSMUST00000225301 Gm47563 processed_pseudogene Interval_144605 chr7 26982099 26984281 + 0 NA Intergenic Intergenic -43806 ENSMUSG00000091867.2 ENSMUSG00000091867 ENSMUST00000170227 Cyp2a22 protein_coding Interval_157292 chr8 69075027 69075338 + 0 NA TTS (ENSMUSG00000036330.12) protein_coding-TTS (ENSMUSG00000036330.12) -13605 ENSMUSG00000006273.14 ENSMUSG00000006273 ENSMUST00000129797 Atp6v1b2 protein_coding Interval_75111 chr17 63541432 63541975 + 0 NA Intergenic Intergenic -29200 ENSMUSG00000117256.1 ENSMUSG00000117256 ENSMUST00000233628 Gm5497 processed_pseudogene Interval_41584 chr12 116563361 116563821 + 0 NA intron (ENSMUSG00000056553.14, intron 1 of 4) protein_coding-intron (ENSMUSG00000056553.14, intron 1 of 22) -33662 ENSMUSG00000101814.1 ENSMUSG00000101814 ENSMUST00000186869 Gm17807 processed_pseudogene Interval_142086 chr6 137053482 137053950 + 0 NA Intergenic Intergenic 67120 ENSMUSG00000107734.1 ENSMUSG00000107734 ENSMUST00000203175 Gm30055 TEC Interval_12421 chr1 193317421 193317916 + 0 NA intron (ENSMUSG00000026639.18, intron 7 of 26) protein_coding-intron (ENSMUSG00000026639.18, intron 3 of 22) -26779 ENSMUSG00000103736.1 ENSMUSG00000103736 ENSMUST00000193570 Gm37650 antisense Interval_9599 chr1 160084462 160084730 + 0 NA TTS (ENSMUSG00000026725.17) protein_coding-TTS (ENSMUSG00000026725.17) -6654 ENSMUSG00000026729.9 ENSMUSG00000026729 ENSMUST00000169600 4930562F07Rik lincRNA Interval_152905 chr7 139621042 139621400 + 0 NA exon (ENSMUSG00000049571.18, exon 40 of 59) protein_coding-exon (ENSMUSG00000049571.18, exon 40 of 59) -14563 ENSMUSG00000049571.18 ENSMUSG00000049571 ENSMUST00000138129 Cfap46 protein_coding Interval_67764 chr16 56965025 56965269 + 0 NA Intergenic Intergenic -16556 ENSMUSG00000116866.1 ENSMUSG00000116866 ENSMUST00000232096 Gm8938 processed_pseudogene Interval_92054 chr2 52897750 52899318 + 0 NA intron (ENSMUSG00000036053.17, intron 1 of 26) protein_coding-intron (ENSMUSG00000036053.17, intron 1 of 26) 40674 ENSMUSG00000036053.17 ENSMUSG00000036053 ENSMUST00000050719 Fmnl2 protein_coding Interval_77828 chr18 4281436 4282134 + 0 NA Intergenic Intergenic 12697 ENSMUSG00000117482.1 ENSMUSG00000117482 ENSMUST00000234061 Gm7400 processed_pseudogene Interval_121164 chr4 153692067 153692837 + 0 NA Intergenic Intergenic -183932 ENSMUSG00000077519.1 ENSMUSG00000077519 ENSMUST00000104331 Gm25880 snoRNA Interval_151089 chr7 118470427 118470760 + 0 NA Intergenic Intergenic -9902 ENSMUSG00000109167.1 ENSMUSG00000109167 ENSMUST00000208648 Gm44652 TEC Interval_72394 chr17 29570059 29571010 + 0 NA intron (ENSMUSG00000042203.8, intron 3 of 12) protein_coding-intron (ENSMUSG00000042203.8, intron 3 of 12) -18149 ENSMUSG00000079580.9 ENSMUSG00000079580 ENSMUST00000234176 Tmem217 protein_coding Interval_121371 chr4 155314880 155315762 + 0 NA intron (ENSMUSG00000029053.16, intron 4 of 17) protein_coding-intron (ENSMUSG00000029053.16, intron 4 of 17) -28362 ENSMUSG00000098729.1 ENSMUSG00000098729 ENSMUST00000184626 Gm27200 antisense Interval_160544 chr8 110522195 110523469 + 0 NA intron (ENSMUSG00000059854.8, intron 42 of 86) protein_coding-intron (ENSMUSG00000059854.8, intron 42 of 86) 23847 ENSMUSG00000105131.1 ENSMUSG00000105131 ENSMUST00000197243 Gm47306 miRNA Interval_4276 chr1 72339591 72340496 + 0 NA exon (ENSMUSG00000026187.9, exon 12 of 21) protein_coding-exon (ENSMUSG00000026187.9, exon 12 of 21) 32616 ENSMUSG00000026187.9 ENSMUSG00000026187 ENSMUST00000027379 Xrcc5 protein_coding Interval_136391 chr6 54046223 54048115 + 0 NA intron (ENSMUSG00000004633.17, intron 1 of 4) protein_coding-intron (ENSMUSG00000004633.17, intron 1 of 12) 68440 ENSMUSG00000108060.2 ENSMUSG00000108060 ENSMUST00000203047 4921529L05Rik processed_transcript Interval_4711 chr1 77490371 77490661 + 0 NA intron (ENSMUSG00000026235.14, intron 2 of 15) protein_coding-intron (ENSMUSG00000026235.14, intron 3 of 17) 6252 ENSMUSG00000099141.1 ENSMUSG00000099141 ENSMUST00000184495 Mir6352 miRNA Interval_160852 chr8 113791680 113792303 + 0 NA intron (ENSMUSG00000053399.9, intron 3 of 9) protein_coding-intron (ENSMUSG00000053399.9, intron 3 of 22) 53313 ENSMUSG00000053399.9 ENSMUSG00000053399 ENSMUST00000212527 Adamts18 protein_coding Interval_100834 chr2 172794166 172795508 + 0 NA Intergenic Intergenic 69504 ENSMUSG00000093160.1 ENSMUSG00000093160 ENSMUST00000175419 Gm22773 miRNA Interval_149379 chr7 97886670 97886949 + 0 NA intron (ENSMUSG00000030774.13, intron 7 of 14) protein_coding-intron (ENSMUSG00000030774.13, intron 7 of 14) -7106 ENSMUSG00000030774.13 ENSMUSG00000030774 ENSMUST00000207017 Pak1 protein_coding Interval_35986 chr12 33132050 33132568 + 0 NA TTS (ENSMUSG00000052125.16) bidirectional_promoter_lncRNA-TTS (ENSMUSG00000052125.16) 15287 ENSMUSG00000052125.16 ENSMUSG00000052125 ENSMUST00000172344 F730043M19Rik bidirectional_promoter_lncRNA Interval_52768 chr14 49611067 49611280 + 0 NA Intergenic Intergenic -37855 ENSMUSG00000089187.1 ENSMUSG00000089187 ENSMUST00000158562 Gm22949 miRNA Interval_160748 chr8 111938291 111939056 + 0 NA Intergenic Intergenic -2395 ENSMUSG00000031950.7 ENSMUSG00000031950 ENSMUST00000133628 Gabarapl2 protein_coding Interval_32072 chr11 105104155 105105015 + 0 NA intron (ENSMUSG00000040838.10, intron 183 of 187) protein_coding-intron (ENSMUSG00000020690.12, intron 5 of 9) -8071 ENSMUSG00000020690.12 ENSMUSG00000020690 ENSMUST00000154543 Efcab3 protein_coding Interval_65531 chr16 23099483 23100898 + 0 NA Intergenic Intergenic 7247 ENSMUSG00000116625.1 ENSMUSG00000116625 ENSMUST00000231398 Gm8134 processed_pseudogene Interval_123566 chr5 33517725 33518203 + 0 NA Intergenic Intergenic -80500 ENSMUSG00000107248.1 ENSMUSG00000107248 ENSMUST00000200726 Gm43851 lincRNA Interval_141858 chr6 134963338 134963608 + 0 NA Intergenic Intergenic -18245 ENSMUSG00000090698.2 ENSMUSG00000090698 ENSMUST00000167323 Apold1 protein_coding Interval_80714 chr18 46546491 46546748 + 0 NA Intergenic Intergenic -20648 ENSMUSG00000033319.5 ENSMUSG00000033319 ENSMUST00000036226 Fem1c protein_coding Interval_27334 chr11 66598530 66598947 + 0 NA Intergenic Intergenic 35131 ENSMUSG00000080978.2 ENSMUSG00000080978 ENSMUST00000121380 Gm12297 processed_pseudogene Interval_135017 chr6 34609817 34611111 + 0 NA intron (ENSMUSG00000029761.16, intron 1 of 4) protein_coding-intron (ENSMUSG00000029761.16, intron 1 of 13) 43430 ENSMUSG00000085382.1 ENSMUSG00000085382 ENSMUST00000137136 Gm13861 lincRNA Interval_38247 chr12 76631737 76631937 + 0 NA intron (ENSMUSG00000021061.15, intron 3 of 31) protein_coding-intron (ENSMUSG00000021061.15, intron 3 of 35) -47751 ENSMUSG00000021061.15 ENSMUSG00000021061 ENSMUST00000166101 Sptb protein_coding Interval_144846 chr7 28576386 28576968 + 0 NA intron (ENSMUSG00000030602.13, intron 1 of 3) protein_coding-intron (ENSMUSG00000109336.1, intron 1 of 12) -15693 ENSMUSG00000098558.1 ENSMUSG00000098558 ENSMUST00000183983 Mir7049 miRNA Interval_85666 chr19 29482789 29483004 + 0 NA intron (ENSMUSG00000097855.8, intron 2 of 5) antisense-intron (ENSMUSG00000097855.8, intron 2 of 5) 38074 ENSMUSG00000097855.8 ENSMUSG00000097855 ENSMUST00000180737 A930007I19Rik antisense Interval_114396 chr4 75045100 75045356 + 0 NA Intergenic Intergenic 36472 ENSMUSG00000082533.1 ENSMUSG00000082533 ENSMUST00000118486 Gm11253 processed_pseudogene Interval_143455 chr7 6918147 6919349 + 0 NA intron (ENSMUSG00000051527.11, intron 4 of 8) protein_coding-intron (ENSMUSG00000051527.11, intron 2 of 7) 18396 ENSMUSG00000109094.1 ENSMUSG00000109094 ENSMUST00000207399 Gm44587 TEC Interval_102435 chr3 25914672 25914930 + 0 NA intron (ENSMUSG00000063887.13, intron 2 of 5) protein_coding-intron (ENSMUSG00000063887.13, intron 2 of 5) 183558 ENSMUSG00000104295.1 ENSMUSG00000104295 ENSMUST00000192273 Gm6197 processed_pseudogene Interval_117382 chr4 123355140 123356602 + 0 NA intron (ENSMUSG00000028649.21, intron 91 of 93) protein_coding-intron (ENSMUSG00000028649.21, intron 90 of 92) -13068 ENSMUSG00000032726.12 ENSMUSG00000032726 ENSMUST00000040496 Bmp8a protein_coding Interval_3651 chr1 60408978 60410269 + 0 NA promoter-TSS (ENSMUSG00000026782.15) protein_coding-promoter-TSS (ENSMUSG00000026782.15) -158 ENSMUSG00000026782.15 ENSMUSG00000026782 ENSMUST00000190158 Abi2 protein_coding Interval_172087 chrX 7197793 7198063 + 0 NA intron (ENSMUSG00000004317.14, intron 3 of 6) protein_coding-intron (ENSMUSG00000004317.14, intron 4 of 14) -9255 ENSMUSG00000004317.14 ENSMUSG00000004317 ENSMUST00000132126 Clcn5 protein_coding Interval_170508 chr9 108392208 108393466 + 0 NA promoter-TSS (ENSMUSG00000032611.9) protein_coding-promoter-TSS (ENSMUSG00000032611.9) 32 ENSMUSG00000032611.9 ENSMUSG00000032611 ENSMUST00000035234 1700102P08Rik protein_coding Interval_54455 chr14 69861253 69862978 + 0 NA intron (ENSMUSG00000022085.4, intron 3 of 6) protein_coding-intron (ENSMUSG00000022085.4, intron 3 of 6) 21695 ENSMUSG00000022085.4 ENSMUSG00000022085 ENSMUST00000022678 Pebp4 protein_coding Interval_121958 chr5 12561845 12562527 + 0 NA intron (ENSMUSG00000040254.11, intron 11 of 16) protein_coding-intron (ENSMUSG00000040254.11, intron 11 of 17) 7554 ENSMUSG00000104632.1 ENSMUSG00000104632 ENSMUST00000196982 Gm42909 TEC Interval_5647 chr1 90524556 90525395 + 0 NA Intergenic Intergenic 4479 ENSMUSG00000103292.1 ENSMUSG00000103292 ENSMUST00000192105 Gm35048 TEC Interval_34021 chr11 120065016 120066069 + 0 NA promoter-TSS (ENSMUSG00000039781.14) protein_coding-promoter-TSS (ENSMUSG00000039781.14) 2696 ENSMUSG00000093075.1 ENSMUSG00000093075 ENSMUST00000175334 Gm25948 miRNA Interval_173690 chrX 101983713 101984891 + 0 NA intron (ENSMUSG00000079481.11, intron 1 of 1) protein_coding-intron (ENSMUSG00000079481.11, intron 1 of 7) 22505 ENSMUSG00000079481.11 ENSMUSG00000079481 ENSMUST00000129185 Nhsl2 protein_coding Interval_118306 chr4 130182738 130183965 + 0 NA Intergenic Intergenic -8559 ENSMUSG00000028776.14 ENSMUSG00000028776 ENSMUST00000133660 Tinagl1 protein_coding Interval_18890 chr10 92614271 92615168 + 0 NA Intergenic Intergenic 27505 ENSMUSG00000076238.1 ENSMUSG00000076238 ENSMUST00000102283 Gm22582 miRNA Interval_118116 chr4 129040796 129041537 + 0 NA Intergenic Intergenic 16817 ENSMUSG00000085085.2 ENSMUSG00000085085 ENSMUST00000149472 1700086P04Rik lincRNA Interval_153965 chr8 11544423 11544684 + 0 NA intron (ENSMUSG00000056228.10, intron 3 of 6) protein_coding-intron (ENSMUSG00000056228.10, intron 3 of 14) 6188 ENSMUSG00000056228.10 ENSMUSG00000056228 ENSMUST00000211734 Cars2 protein_coding Interval_95761 chr2 115947461 115948721 + 0 NA intron (ENSMUSG00000027210.20, intron 3 of 3) protein_coding-intron (ENSMUSG00000027210.20, intron 8 of 11) -79224 ENSMUSG00000027210.20 ENSMUSG00000027210 ENSMUST00000138526 Meis2 protein_coding Interval_118666 chr4 133078776 133079813 + 0 NA Intergenic Intergenic -51246 ENSMUSG00000028868.13 ENSMUSG00000028868 ENSMUST00000136637 Wasf2 protein_coding Interval_112682 chr4 44038718 44039890 + 0 NA intron (ENSMUSG00000028479.18, intron 7 of 8) protein_coding-intron (ENSMUSG00000028479.18, intron 10 of 11) 15993 ENSMUSG00000028479.18 ENSMUSG00000028479 ENSMUST00000140724 Gne protein_coding Interval_171613 chr9 119547031 119547399 + 0 NA intron (ENSMUSG00000032511.17, intron 5 of 27) protein_coding-intron (ENSMUSG00000032511.17, intron 4 of 26) 16288 ENSMUSG00000032511.17 ENSMUSG00000032511 ENSMUST00000138934 Scn5a protein_coding Interval_64232 chr16 9390530 9391770 + 0 NA Intergenic Intergenic 232380 ENSMUSG00000116123.1 ENSMUSG00000116123 ENSMUST00000229655 Gm49451 lincRNA Interval_15702 chr10 53806599 53806945 + 0 NA Intergenic Intergenic -3243 ENSMUSG00000112809.1 ENSMUSG00000112809 ENSMUST00000217870 Gm47915 lincRNA Interval_88366 chr2 4490123 4490338 + 0 NA intron (ENSMUSG00000026657.17, intron 5 of 24) protein_coding-intron (ENSMUSG00000026657.17, intron 4 of 23) -23560 ENSMUSG00000086874.1 ENSMUSG00000086874 ENSMUST00000139479 Gm13175 antisense Interval_166488 chr9 59989675 59990456 + 0 NA intron (ENSMUSG00000032289.15, intron 10 of 16) protein_coding-intron (ENSMUSG00000032289.15, intron 5 of 11) -28294 ENSMUSG00000084847.7 ENSMUSG00000084847 ENSMUST00000133523 Gm15507 lincRNA Interval_134262 chr6 24055055 24056229 + 0 NA Intergenic Intergenic 52929 ENSMUSG00000029700.11 ENSMUSG00000029700 ENSMUST00000176692 Slc13a1 protein_coding Interval_146471 chr7 46201508 46203226 + 0 NA promoter-TSS (ENSMUSG00000030838.20) protein_coding-promoter-TSS (ENSMUSG00000030838.20) -2182 ENSMUSG00000110060.1 ENSMUSG00000110060 ENSMUST00000211426 Gm9860 TEC Interval_43646 chr13 34414871 34415049 + 0 NA Intergenic Intergenic 11471 ENSMUSG00000114170.1 ENSMUSG00000114170 ENSMUST00000222063 Gm47120 processed_pseudogene Interval_21677 chr11 3637840 3638036 + 0 NA Intergenic Intergenic -4496 ENSMUSG00000079889.4 ENSMUSG00000079889 ENSMUST00000116005 Gm11951 processed_pseudogene Interval_33475 chr11 116730076 116731675 + 0 NA Intergenic Intergenic 18958 ENSMUSG00000078586.3 ENSMUSG00000078586 ENSMUST00000106377 Gm11735 unprocessed_pseudogene Interval_3855 chr1 63738911 63739367 + 0 NA intron (ENSMUSG00000025962.15, intron 1 of 3) protein_coding-intron (ENSMUSG00000025962.15, intron 6 of 11) 8498 ENSMUSG00000025962.15 ENSMUSG00000025962 ENSMUST00000134454 Fastkd2 protein_coding Interval_63300 chr15 100188520 100189321 + 0 NA TTS (ENSMUSG00000116366.1) antisense-TTS (ENSMUSG00000116366.1) 6391 ENSMUSG00000116366.1 ENSMUSG00000116366 ENSMUST00000229080 Gm49475 antisense Interval_40310 chr12 103492904 103495035 + 0 NA Intergenic Intergenic 10527 ENSMUSG00000113383.1 ENSMUSG00000113383 ENSMUST00000221223 Gm47267 lincRNA Interval_27004 chr11 62322906 62323137 + 0 NA intron (ENSMUSG00000018501.17, intron 19 of 22) protein_coding-intron (ENSMUSG00000018501.17, intron 42 of 45) -8400 ENSMUSG00000081944.1 ENSMUSG00000081944 ENSMUST00000121709 Gm12276 processed_pseudogene Interval_107281 chr3 105418257 105418802 + 0 NA Intergenic Intergenic 33198 ENSMUSG00000074346.6 ENSMUSG00000074346 ENSMUST00000130683 Kcnd3os antisense Interval_49078 chr13 107774574 107774834 + 0 NA intron (ENSMUSG00000032846.10, intron 2 of 12) protein_coding-intron (ENSMUSG00000032846.10, intron 3 of 14) 54576 ENSMUSG00000093334.2 ENSMUSG00000093334 ENSMUST00000175593 Gm22118 miRNA Interval_97669 chr2 142577349 142577691 + 0 NA exon (ENSMUSG00000083215.3, exon 1 of 1) processed_pseudogene-exon (ENSMUSG00000083215.3, exon 1 of 1) 592 ENSMUSG00000083215.3 ENSMUSG00000083215 ENSMUST00000119377 Rbmx2-ps processed_pseudogene Interval_44439 chr13 44848068 44848485 + 0 NA TTS (ENSMUSG00000038518.15) protein_coding-TTS (ENSMUSG00000038518.15) -9993 ENSMUSG00000088189.1 ENSMUSG00000088189 ENSMUST00000157564 Gm22213 snoRNA Interval_85386 chr19 25392227 25392987 + 0 NA intron (ENSMUSG00000032702.16, intron 4 of 13) protein_coding-intron (ENSMUSG00000032702.16, intron 4 of 13) -29632 ENSMUSG00000032702.16 ENSMUSG00000032702 ENSMUST00000155788 Kank1 protein_coding Interval_55549 chr14 91534910 91535664 + 0 NA Intergenic Intergenic 112552 ENSMUSG00000115368.1 ENSMUSG00000115368 ENSMUST00000227213 Gm48942 lincRNA Interval_35606 chr12 25335192 25336496 + 0 NA intron (ENSMUSG00000113669.1, intron 2 of 3) lincRNA-intron (ENSMUSG00000113669.1, intron 1 of 2) 17659 ENSMUSG00000113669.1 ENSMUSG00000113669 ENSMUST00000221270 Gm36723 lincRNA Interval_91272 chr2 37268680 37268879 + 0 NA intron (ENSMUSG00000049094.7, intron 1 of 1) transcribed_unprocessed_pseudogene-intron (ENSMUSG00000049094.7, intron 1 of 1) 1828 ENSMUSG00000049094.7 ENSMUSG00000049094 ENSMUST00000143957 Olfr367-ps transcribed_unprocessed_pseudogene Interval_115089 chr4 89505353 89505627 + 0 NA Intergenic Intergenic 60271 ENSMUSG00000098669.1 ENSMUSG00000098669 ENSMUST00000183666 Gm27580 misc_RNA Interval_61574 chr15 82547122 82548827 + 0 NA TTS (ENSMUSG00000098901.1) miRNA-TTS (ENSMUSG00000098901.1) 678 ENSMUSG00000116219.1 ENSMUSG00000116219 ENSMUST00000230537 Gm28023 unprocessed_pseudogene Interval_41203 chr12 111766123 111766804 + 0 NA intron (ENSMUSG00000021288.19, intron 1 of 15) protein_coding-intron (ENSMUSG00000021288.19, intron 1 of 15) 7614 ENSMUSG00000021288.19 ENSMUSG00000021288 ENSMUST00000147203 Klc1 protein_coding Interval_162711 chr9 7952689 7953896 + 0 NA intron (ENSMUSG00000053110.13, intron 4 of 8) protein_coding-intron (ENSMUSG00000053110.13, intron 4 of 8) -12546 ENSMUSG00000092185.1 ENSMUSG00000092185 ENSMUST00000174760 Gm20416 processed_transcript Interval_134160 chr6 22091216 22091634 + 0 NA intron (ENSMUSG00000062980.15, intron 5 of 8) protein_coding-intron (ENSMUSG00000062980.15, intron 6 of 9) 65482 ENSMUSG00000062980.15 ENSMUSG00000062980 ENSMUST00000154734 Cped1 protein_coding Interval_18864 chr10 91467893 91468322 + 0 NA Intergenic Intergenic -19727 ENSMUSG00000111051.1 ENSMUSG00000111051 ENSMUST00000213414 Gm47084 processed_pseudogene Interval_59150 chr15 44931180 44931425 + 0 NA Intergenic Intergenic -9240 ENSMUSG00000089137.1 ENSMUSG00000089137 ENSMUST00000158512 Gm24768 snRNA Interval_32371 chr11 107200669 107201018 + 0 NA Intergenic Intergenic 9749 ENSMUSG00000081360.1 ENSMUSG00000081360 ENSMUST00000119942 Gm11718 processed_pseudogene Interval_45389 chr13 54820914 54821375 + 0 NA Intergenic Intergenic 19760 ENSMUSG00000086097.1 ENSMUSG00000086097 ENSMUST00000148974 Gm16250 processed_pseudogene Interval_98635 chr2 153704469 153705768 + 0 NA intron (ENSMUSG00000082079.2, intron 2 of 18) protein_coding-intron (ENSMUSG00000082079.2, intron 2 of 18) 8466 ENSMUSG00000082079.2 ENSMUSG00000082079 ENSMUST00000119996 Dnmt3c protein_coding Interval_135692 chr6 43441484 43441865 + 0 NA intron (ENSMUSG00000029735.17, intron 6 of 7) protein_coding-intron (ENSMUSG00000029735.17, intron 7 of 8) -26305 ENSMUSG00000107709.1 ENSMUSG00000107709 ENSMUST00000203260 9430018G01Rik antisense Interval_62601 chr15 95262030 95262334 + 0 NA intron (ENSMUSG00000022454.17, intron 15 of 20) protein_coding-intron (ENSMUSG00000022454.17, intron 16 of 20) -99788 ENSMUSG00000100603.6 ENSMUSG00000100603 ENSMUST00000185302 1700129L04Rik sense_intronic Interval_30542 chr11 95019859 95020163 + 0 NA exon (ENSMUSG00000047181.12, exon 4 of 10) protein_coding-exon (ENSMUSG00000047181.12, exon 4 of 10) 10129 ENSMUSG00000047181.12 ENSMUSG00000047181 ENSMUST00000124735 Samd14 protein_coding Interval_84885 chr19 18613835 18614223 + 0 NA intron (ENSMUSG00000024725.13, intron 1 of 10) protein_coding-intron (ENSMUSG00000024725.13, intron 1 of 9) 17760 ENSMUSG00000024725.13 ENSMUSG00000024725 ENSMUST00000138860 Ostf1 protein_coding Interval_162453 chr8 128941194 128941871 + 0 NA intron (ENSMUSG00000025808.17, intron 20 of 55) protein_coding-intron (ENSMUSG00000025808.17, intron 20 of 55) -76358 ENSMUSG00000077538.1 ENSMUSG00000077538 ENSMUST00000104350 Gm22545 snoRNA Interval_31367 chr11 100284706 100285488 + 0 NA intron (ENSMUSG00000086163.1, intron 1 of 3) antisense-intron (ENSMUSG00000086163.1, intron 1 of 3) 6189 ENSMUSG00000086163.1 ENSMUSG00000086163 ENSMUST00000132973 Gm14206 antisense Interval_50128 chr14 8156674 8157582 + 0 NA intron (ENSMUSG00000033885.15, intron 17 of 17) protein_coding-intron (ENSMUSG00000033885.15, intron 17 of 17) 9968 ENSMUSG00000021748.9 ENSMUSG00000021748 ENSMUST00000224690 Pdhb protein_coding Interval_39287 chr12 86477758 86479548 + 0 NA intron (ENSMUSG00000021255.17, intron 1 of 5) protein_coding-intron (ENSMUSG00000021255.17, intron 2 of 6) 8536 ENSMUSG00000021255.17 ENSMUSG00000021255 ENSMUST00000136464 Esrrb protein_coding Interval_120513 chr4 149081414 149082070 + 0 NA intron (ENSMUSG00000028975.16, intron 1 of 3) protein_coding-intron (ENSMUSG00000028975.16, intron 1 of 8) -14641 ENSMUSG00000081086.1 ENSMUSG00000081086 ENSMUST00000118516 Gm9506 processed_pseudogene Interval_29651 chr11 85829491 85830324 + 0 NA intron (ENSMUSG00000087013.7, intron 1 of 4) processed_transcript-intron (ENSMUSG00000087013.7, intron 1 of 3) 2302 ENSMUSG00000087013.7 ENSMUSG00000087013 ENSMUST00000128213 2610027K06Rik processed_transcript Interval_123635 chr5 34124037 34124721 + 0 NA intron (ENSMUSG00000045102.12, intron 5 of 24) protein_coding-intron (ENSMUSG00000045102.12, intron 4 of 24) 5639 ENSMUSG00000106902.1 ENSMUSG00000106902 ENSMUST00000202325 4930557J02Rik antisense Interval_82787 chr18 77076978 77078959 + 0 NA intron (ENSMUSG00000025423.16, intron 1 of 13) protein_coding-intron (ENSMUSG00000025423.16, intron 1 of 12) 12723 ENSMUSG00000025423.16 ENSMUSG00000025423 ENSMUST00000168882 Pias2 protein_coding Interval_28440 chr11 75902895 75904399 + 0 NA intron (ENSMUSG00000020847.15, intron 5 of 5) protein_coding-intron (ENSMUSG00000020847.15, intron 4 of 4) 34782 ENSMUSG00000020847.15 ENSMUSG00000020847 ENSMUST00000152035 Rph3al protein_coding Interval_129528 chr5 120720702 120721641 + 0 NA Intergenic Intergenic 14404 ENSMUSG00000032690.16 ENSMUSG00000032690 ENSMUST00000146101 Oas2 protein_coding Interval_57063 chr15 5241786 5242905 + 0 NA exon (ENSMUSG00000039942.15, exon 2 of 3) protein_coding-exon (ENSMUSG00000039942.15, exon 2 of 3) 365 ENSMUSG00000039942.15 ENSMUSG00000039942 ENSMUST00000047379 Ptger4 protein_coding Interval_97639 chr2 141541152 141541598 + 0 NA intron (ENSMUSG00000068205.14, intron 6 of 16) protein_coding-intron (ENSMUSG00000068205.14, intron 6 of 17) -99115 ENSMUSG00000065347.1 ENSMUSG00000065347 ENSMUST00000083413 Gm25583 snRNA Interval_92631 chr2 61729228 61730013 + 0 NA intron (ENSMUSG00000026914.15, intron 3 of 6) protein_coding-intron (ENSMUSG00000026914.15, intron 3 of 11) -22029 ENSMUSG00000081954.1 ENSMUSG00000081954 ENSMUST00000119435 Gm13626 processed_pseudogene Interval_44003 chr13 39121066 39121480 + 0 NA Intergenic Intergenic 160654 ENSMUSG00000096932.2 ENSMUSG00000096932 ENSMUST00000181376 5033403F01Rik antisense Interval_142519 chr6 143051450 143052312 + 0 NA intron (ENSMUSG00000030279.15, intron 9 of 24) protein_coding-intron (ENSMUSG00000030279.15, intron 10 of 24) 48209 ENSMUSG00000030279.15 ENSMUSG00000030279 ENSMUST00000205079 C2cd5 protein_coding Interval_120448 chr4 148674655 148675287 + 0 NA Intergenic Intergenic 31654 ENSMUSG00000070577.5 ENSMUSG00000070577 ENSMUST00000105698 Gm572 protein_coding Interval_138871 chr6 92779156 92780031 + 0 NA intron (ENSMUSG00000030022.14, intron 28 of 29) protein_coding-intron (ENSMUSG00000030022.14, intron 38 of 39) -48039 ENSMUSG00000048636.7 ENSMUSG00000048636 ENSMUST00000133858 A730049H05Rik protein_coding Interval_36166 chr12 37395975 37396277 + 0 NA intron (ENSMUSG00000050103.18, intron 5 of 12) protein_coding-intron (ENSMUSG00000050103.18, intron 5 of 12) -49059 ENSMUSG00000050103.18 ENSMUSG00000050103 ENSMUST00000221949 Agmo protein_coding Interval_76106 chr17 75040453 75040660 + 0 NA intron (ENSMUSG00000001870.16, intron 2 of 34) protein_coding-intron (ENSMUSG00000001870.16, intron 2 of 33) 34988 ENSMUSG00000001870.16 ENSMUSG00000001870 ENSMUST00000135750 Ltbp1 protein_coding Interval_67874 chr16 58461535 58462083 + 0 NA intron (ENSMUSG00000035107.13, intron 3 of 5) protein_coding-intron (ENSMUSG00000035107.13, intron 13 of 15) 1610 ENSMUSG00000035107.13 ENSMUSG00000035107 ENSMUST00000135415 Dcbld2 protein_coding Interval_172881 chrX 52758541 52761205 + 0 NA Intergenic Intergenic 12876 ENSMUSG00000083621.1 ENSMUSG00000083621 ENSMUST00000119571 Gm14586 processed_pseudogene Interval_99949 chr2 166051544 166051886 + 0 NA intron (ENSMUSG00000027678.17, intron 6 of 6) protein_coding-intron (ENSMUSG00000027678.17, intron 8 of 22) 3797 ENSMUSG00000027678.17 ENSMUSG00000027678 ENSMUST00000139394 Ncoa3 protein_coding Interval_49772 chr13 114909860 114910108 + 0 NA intron (ENSMUSG00000015533.9, intron 1 of 29) protein_coding-intron (ENSMUSG00000015533.9, intron 1 of 29) -8041 ENSMUSG00000015533.9 ENSMUSG00000015533 ENSMUST00000224204 Itga2 protein_coding Interval_169052 chr9 91271488 91271813 + 0 NA exon (ENSMUSG00000102814.1, exon 1 of 1) TEC-exon (ENSMUSG00000102814.1, exon 1 of 1) 1754 ENSMUSG00000102814.1 ENSMUSG00000102814 ENSMUST00000195216 Gm37812 TEC Interval_95439 chr2 109340805 109341032 + 0 NA intron (ENSMUSG00000027115.14, intron 16 of 16) protein_coding-intron (ENSMUSG00000027115.14, intron 16 of 16) 48895 ENSMUSG00000027115.14 ENSMUSG00000027115 ENSMUST00000162515 Kif18a protein_coding Interval_17283 chr10 75565464 75567035 + 0 NA promoter-TSS (ENSMUSG00000006345.10) protein_coding-promoter-TSS (ENSMUSG00000006345.10) -12355 ENSMUSG00000046807.10 ENSMUSG00000046807 ENSMUST00000051129 Lrrc75b protein_coding Interval_116984 chr4 118645384 118645861 + 0 NA Intergenic Intergenic -9560 ENSMUSG00000085292.1 ENSMUSG00000085292 ENSMUST00000134971 Gm12853 antisense Interval_22238 chr11 7531617 7532317 + 0 NA Intergenic Intergenic -241593 ENSMUSG00000087637.1 ENSMUSG00000087637 ENSMUST00000149481 Gm11986 lincRNA Interval_31479 chr11 100918432 100918689 + 0 NA intron (ENSMUSG00000004040.16, intron 1 of 23) protein_coding-intron (ENSMUSG00000004040.16, intron 1 of 23) -19253 ENSMUSG00000004040.16 ENSMUSG00000004040 ENSMUST00000130686 Stat3 protein_coding Interval_11866 chr1 186572336 186572648 + 0 NA Intergenic Intergenic -13811 ENSMUSG00000103690.1 ENSMUSG00000103690 ENSMUST00000195454 A730004F24Rik lincRNA Interval_26326 chr11 56203283 56204242 + 0 NA Intergenic Intergenic 59321 ENSMUSG00000084169.1 ENSMUSG00000084169 ENSMUST00000120178 Gm12240 processed_pseudogene Interval_125344 chr5 66327804 66329007 + 0 NA intron (ENSMUSG00000029207.16, intron 11 of 17) protein_coding-intron (ENSMUSG00000029207.16, intron 12 of 17) -2343 ENSMUSG00000084544.1 ENSMUSG00000084544 ENSMUST00000122595 Gm23183 misc_RNA Interval_143485 chr7 7269855 7273494 + 0 NA intron (ENSMUSG00000098900.2, intron 1 of 3) protein_coding-intron (ENSMUSG00000110105.1, intron 1 of 6) -4398 ENSMUSG00000110105.1 ENSMUSG00000110105 ENSMUST00000209788 Gm45844 protein_coding Interval_34082 chr11 120399102 120400189 + 0 NA intron (ENSMUSG00000039703.15, intron 12 of 15) protein_coding-intron (ENSMUSG00000039703.15, intron 12 of 16) -16142 ENSMUSG00000039703.15 ENSMUSG00000039703 ENSMUST00000136095 Nploc4 protein_coding Interval_24937 chr11 41693777 41694082 + 0 NA Intergenic Intergenic -16413 ENSMUSG00000087306.7 ENSMUSG00000087306 ENSMUST00000139508 A230004M16Rik processed_transcript Interval_34748 chr12 9358931 9359338 + 0 NA Intergenic Intergenic -12304 ENSMUSG00000113913.1 ENSMUSG00000113913 ENSMUST00000223136 Gm46323 lincRNA Interval_142143 chr6 137589474 137590082 + 0 NA promoter-TSS (ENSMUSG00000015766.14) protein_coding-promoter-TSS (ENSMUSG00000015766.14) 3797 ENSMUSG00000107878.1 ENSMUSG00000107878 ENSMUST00000203153 Gm44106 TEC Interval_131344 chr5 136602631 136603100 + 0 NA Intergenic Intergenic -35375 ENSMUSG00000029705.17 ENSMUSG00000029705 ENSMUST00000177305 Cux1 protein_coding Interval_156690 chr8 57333497 57335282 + 0 NA promoter-TSS (ENSMUSG00000109697.1) lincRNA-promoter-TSS (ENSMUSG00000109697.1) -2 ENSMUSG00000109697.1 ENSMUSG00000109697 ENSMUST00000209202 Gm34030 lincRNA Interval_110756 chr4 8097605 8099336 + 0 NA Intergenic Intergenic -20150 ENSMUSG00000083068.1 ENSMUSG00000083068 ENSMUST00000120050 Gm11800 processed_pseudogene Interval_153356 chr7 143881711 143882581 + 0 NA intron (ENSMUSG00000031085.16, intron 6 of 9) protein_coding-intron (ENSMUSG00000031085.16, intron 6 of 10) 15275 ENSMUSG00000031085.16 ENSMUSG00000031085 ENSMUST00000207388 Acte1 protein_coding Interval_48454 chr13 99124951 99125532 + 0 NA Intergenic Intergenic 24480 ENSMUSG00000097848.2 ENSMUSG00000097848 ENSMUST00000224929 Gm807 lincRNA Interval_18859 chr10 91374451 91375149 + 0 NA Intergenic Intergenic -48554 ENSMUSG00000111591.1 ENSMUSG00000111591 ENSMUST00000215290 Gm47083 processed_pseudogene Interval_78333 chr18 12022214 12022788 + 0 NA intron (ENSMUSG00000049411.15, intron 14 of 15) protein_coding-intron (ENSMUSG00000049411.15, intron 11 of 12) 98979 ENSMUSG00000049411.15 ENSMUSG00000049411 ENSMUST00000234833 Tmem241 protein_coding Interval_54836 chr14 75721600 75722488 + 0 NA intron (ENSMUSG00000034893.9, intron 12 of 17) protein_coding-intron (ENSMUSG00000034893.9, intron 16 of 22) 10943 ENSMUSG00000034893.9 ENSMUSG00000034893 ENSMUST00000228081 Cog3 protein_coding Interval_88704 chr2 9881435 9883447 + 0 NA promoter-TSS (ENSMUSG00000025783.2) protein_coding-promoter-TSS (ENSMUSG00000025783.2) -195 ENSMUSG00000025783.2 ENSMUSG00000025783 ENSMUST00000114919 4930412O13Rik protein_coding Interval_5134 chr1 85921335 85921945 + 0 NA Intergenic Intergenic -7246 ENSMUSG00000026224.11 ENSMUSG00000026224 ENSMUST00000188949 4933407L21Rik protein_coding Interval_103758 chr3 52390133 52391519 + 0 NA Intergenic Intergenic -34582 ENSMUSG00000103454.1 ENSMUSG00000103454 ENSMUST00000194115 Gm38098 processed_pseudogene Interval_90834 chr2 32884485 32885411 + 0 NA intron (ENSMUSG00000026796.16, intron 1 of 13) protein_coding-intron (ENSMUSG00000026796.16, intron 1 of 13) -8947 ENSMUSG00000087496.1 ENSMUSG00000087496 ENSMUST00000151820 Gm13523 antisense Interval_49899 chr13 118027731 118028387 + 0 NA Intergenic Intergenic -8555 ENSMUSG00000088155.1 ENSMUSG00000088155 ENSMUST00000157530 Gm26349 snoRNA Interval_70150 chr17 5832515 5832739 + 0 NA Intergenic Intergenic -5341 ENSMUSG00000096962.1 ENSMUSG00000096962 ENSMUST00000180520 Gm26622 processed_pseudogene Interval_97552 chr2 139763880 139764150 + 0 NA Intergenic Intergenic 85837 ENSMUSG00000074766.10 ENSMUSG00000074766 ENSMUST00000099307 Ism1 protein_coding Interval_17233 chr10 75173491 75174083 + 0 NA promoter-TSS (ENSMUSG00000009681.10) protein_coding-promoter-TSS (ENSMUSG00000009681.10) -2589 ENSMUSG00000009681.10 ENSMUSG00000009681 ENSMUST00000219807 Bcr protein_coding Interval_67579 chr16 51212085 51212498 + 0 NA Intergenic Intergenic 151541 ENSMUSG00000081453.1 ENSMUSG00000081453 ENSMUST00000118650 Gm6767 processed_pseudogene Interval_13200 chr10 12995600 12997349 + 0 NA Intergenic Intergenic -8869 ENSMUSG00000078348.4 ENSMUSG00000078348 ENSMUST00000105139 Sf3b5 protein_coding Interval_117198 chr4 120516633 120518671 + 0 NA promoter-TSS (ENSMUSG00000000085.16) protein_coding-promoter-TSS (ENSMUSG00000000085.16) -14579 ENSMUSG00000047518.3 ENSMUSG00000047518 ENSMUST00000062990 Slfnl1 protein_coding Interval_148082 chr7 79117509 79117976 + 0 NA intron (ENSMUSG00000030606.8, intron 4 of 4) protein_coding-intron (ENSMUSG00000030606.8, intron 4 of 4) 10937 ENSMUSG00000030606.8 ENSMUSG00000030606 ENSMUST00000206402 Hapln3 protein_coding Interval_13653 chr10 20494058 20494259 + 0 NA intron (ENSMUSG00000019990.15, intron 2 of 2) protein_coding-intron (ENSMUSG00000019990.15, intron 2 of 12) 25610 ENSMUSG00000092051.2 ENSMUSG00000092051 ENSMUST00000166792 Gm17229 transcribed_processed_pseudogene Interval_119336 chr4 136931130 136932075 + 0 NA intron (ENSMUSG00000028661.8, intron 15 of 16) protein_coding-intron (ENSMUSG00000028661.8, intron 15 of 16) 25214 ENSMUSG00000028661.8 ENSMUSG00000028661 ENSMUST00000030420 Epha8 protein_coding Interval_162445 chr8 128813054 128813610 + 0 NA intron (ENSMUSG00000025808.17, intron 46 of 55) protein_coding-intron (ENSMUSG00000025808.17, intron 46 of 55) -14166 ENSMUSG00000025808.17 ENSMUSG00000025808 ENSMUST00000108747 Ccdc7a protein_coding Interval_57384 chr15 10448834 10449114 + 0 NA intron (ENSMUSG00000044224.16, intron 2 of 2) protein_coding-intron (ENSMUSG00000044224.16, intron 10 of 11) 2936 ENSMUSG00000044224.16 ENSMUSG00000044224 ENSMUST00000147224 Dnajc21 protein_coding Interval_134125 chr6 21014194 21014714 + 0 NA Intergenic Intergenic -1212 ENSMUSG00000087831.1 ENSMUSG00000087831 ENSMUST00000157206 Gm23960 snoRNA Interval_148544 chr7 82298529 82299223 + 0 NA intron (ENSMUSG00000030638.13, intron 8 of 8) protein_coding-intron (ENSMUSG00000030638.13, intron 8 of 8) -43392 ENSMUSG00000109479.1 ENSMUSG00000109479 ENSMUST00000208587 Gm44919 TEC Interval_115631 chr4 101493722 101494196 + 0 NA Intergenic Intergenic -2672 ENSMUSG00000028528.17 ENSMUSG00000028528 ENSMUST00000106933 Dnajc6 protein_coding Interval_79216 chr18 25746130 25747548 + 0 NA intron (ENSMUSG00000024268.16, intron 1 of 12) protein_coding-intron (ENSMUSG00000024268.16, intron 1 of 12) 33069 ENSMUSG00000114511.1 ENSMUSG00000114511 ENSMUST00000224766 0710001A04Rik antisense Interval_28210 chr11 74392038 74392283 + 0 NA intron (ENSMUSG00000038807.19, intron 23 of 25) protein_coding-intron (ENSMUSG00000038807.19, intron 23 of 25) 30091 ENSMUSG00000058275.3 ENSMUSG00000058275 ENSMUST00000077794 Olfr412 protein_coding Interval_73060 chr17 34539606 34539911 + 0 NA intron (ENSMUSG00000061728.5, intron 6 of 8) unprocessed_pseudogene-intron (ENSMUSG00000061728.5, intron 6 of 8) 7893 ENSMUSG00000061728.5 ENSMUSG00000061728 ENSMUST00000023469 Btnl7-ps unprocessed_pseudogene Interval_74135 chr17 46710863 46712275 + 0 NA promoter-TSS (ENSMUSG00000002763.16) protein_coding-promoter-TSS (ENSMUSG00000002763.16) -6458 ENSMUSG00000059409.9 ENSMUSG00000059409 ENSMUST00000233757 Ppp2r5d protein_coding Interval_43324 chr13 29196678 29198293 + 0 NA intron (ENSMUSG00000006191.17, intron 15 of 16) protein_coding-intron (ENSMUSG00000006191.17, intron 15 of 16) 39135 ENSMUSG00000086423.1 ENSMUSG00000086423 ENSMUST00000137593 Gm11364 sense_intronic Interval_126994 chr5 99264946 99265241 + 0 NA intron (ENSMUSG00000089809.9, intron 4 of 16) protein_coding-intron (ENSMUSG00000089809.9, intron 4 of 16) -9002 ENSMUSG00000105686.1 ENSMUSG00000105686 ENSMUST00000196434 Gm35394 lincRNA Interval_15359 chr10 45080584 45081015 + 0 NA intron (ENSMUSG00000019849.11, intron 2 of 14) protein_coding-intron (ENSMUSG00000019849.11, intron 2 of 14) 13596 ENSMUSG00000019849.11 ENSMUSG00000019849 ENSMUST00000099858 Prep protein_coding Interval_47021 chr13 74411338 74412081 + 0 NA Intergenic Intergenic 4644 ENSMUSG00000076033.1 ENSMUSG00000076033 ENSMUST00000102079 Mir692-3 miRNA Interval_86700 chr19 42751811 42753064 + 0 NA promoter-TSS (ENSMUSG00000060224.4) protein_coding-promoter-TSS (ENSMUSG00000060224.4) 338 ENSMUSG00000060224.4 ENSMUSG00000060224 ENSMUST00000238158 Pyroxd2 protein_coding Interval_40854 chr12 108876506 108876723 + 0 NA intron (ENSMUSG00000021266.16, intron 4 of 5) protein_coding-intron (ENSMUSG00000021266.16, intron 4 of 9) -1333 ENSMUSG00000021266.16 ENSMUSG00000021266 ENSMUST00000160974 Wars protein_coding Interval_95087 chr2 103779415 103779695 + 0 NA promoter-TSS (ENSMUSG00000027184.14) protein_coding-promoter-TSS (ENSMUSG00000027184.14) 17313 ENSMUSG00000027184.14 ENSMUSG00000027184 ENSMUST00000146527 Caprin1 protein_coding Interval_26077 chr11 53979523 53980721 + 0 NA promoter-TSS (ENSMUSG00000063652.10) protein_coding-promoter-TSS (ENSMUSG00000063652.10) -10519 ENSMUSG00000063652.10 ENSMUSG00000063652 ENSMUST00000143352 Slc22a21 protein_coding Interval_139396 chr6 99810923 99811285 + 0 NA Intergenic Intergenic 29210 ENSMUSG00000107713.1 ENSMUSG00000107713 ENSMUST00000205215 Gm6681 processed_pseudogene Interval_114280 chr4 70534059 70535813 + 0 NA promoter-TSS (ENSMUSG00000039270.9) protein_coding-promoter-TSS (ENSMUSG00000039270.9) -8 ENSMUSG00000039270.9 ENSMUSG00000039270 ENSMUST00000037881 Megf9 protein_coding Interval_36007 chr12 33243614 33244958 + 0 NA intron (ENSMUSG00000020564.17, intron 3 of 12) protein_coding-intron (ENSMUSG00000020564.17, intron 2 of 2) -15432 ENSMUSG00000079143.3 ENSMUSG00000079143 ENSMUST00000155877 Atxn7l1os1 antisense Interval_41175 chr12 111633165 111634375 + 0 NA exon (ENSMUSG00000007411.16, exon 13 of 16) protein_coding-exon (ENSMUSG00000007411.16, exon 13 of 16) 16900 ENSMUSG00000113910.1 ENSMUSG00000113910 ENSMUST00000220971 Gm48286 sense_overlapping Interval_128907 chr5 115997491 115998176 + 0 NA exon (ENSMUSG00000029516.19, exon 45 of 47) protein_coding-exon (ENSMUSG00000029516.19, exon 45 of 47) -11483 ENSMUSG00000085376.1 ENSMUSG00000085376 ENSMUST00000127049 Gm14508 antisense Interval_171777 chr9 120981084 120982553 + 0 NA intron (ENSMUSG00000040936.15, intron 1 of 2) protein_coding-intron (ENSMUSG00000040936.15, intron 1 of 2) -21311 ENSMUSG00000040936.15 ENSMUSG00000040936 ENSMUST00000164969 Ulk4 protein_coding Interval_91129 chr2 35297861 35298723 + 0 NA intron (ENSMUSG00000026879.14, intron 11 of 14) protein_coding-intron (ENSMUSG00000026879.14, intron 9 of 16) 17902 ENSMUSG00000106961.1 ENSMUSG00000106961 ENSMUST00000202212 Gm43128 TEC Interval_86638 chr19 42209704 42210373 + 0 NA Intergenic Intergenic -7786 ENSMUSG00000018822.7 ENSMUSG00000018822 ENSMUST00000018966 Sfrp5 protein_coding Interval_173882 chrX 106920349 106921111 + 0 NA exon (ENSMUSG00000049929.7, exon 1 of 3) protein_coding-exon (ENSMUSG00000049929.7, exon 1 of 3) 105 ENSMUSG00000049929.7 ENSMUSG00000049929 ENSMUST00000060576 Lpar4 protein_coding Interval_74350 chr17 49258361 49258587 + 0 NA Intergenic Intergenic -34268 ENSMUSG00000064541.1 ENSMUSG00000064541 ENSMUST00000082607 Gm22978 snRNA Interval_138410 chr6 87959298 87959757 + 0 NA Intergenic Intergenic -10650 ENSMUSG00000068689.8 ENSMUSG00000068689 ENSMUST00000161787 Rps19-ps9 processed_pseudogene Interval_113532 chr4 55618350 55619703 + 0 NA intron (ENSMUSG00000085375.1, intron 4 of 4) lincRNA-intron (ENSMUSG00000085375.1, intron 4 of 4) 13877 ENSMUSG00000085375.1 ENSMUSG00000085375 ENSMUST00000123620 Gm12506 lincRNA Interval_101809 chr3 9648477 9649428 + 0 NA Intergenic Intergenic -7568 ENSMUSG00000103876.1 ENSMUSG00000103876 ENSMUST00000195844 Gm17806 processed_pseudogene Interval_29477 chr11 84243451 84244175 + 0 NA intron (ENSMUSG00000020532.18, intron 12 of 55) protein_coding-intron (ENSMUSG00000020532.18, intron 10 of 53) 54220 ENSMUSG00000103122.1 ENSMUSG00000103122 ENSMUST00000194891 Gm37391 TEC Interval_76829 chr17 84368458 84369463 + 0 NA promoter-TSS (ENSMUSG00000024251.10) protein_coding-promoter-TSS (ENSMUSG00000024251.10) -22469 ENSMUSG00000096415.1 ENSMUSG00000096415 ENSMUST00000179017 Gm24722 snRNA Interval_64641 chr16 13842614 13842815 + 0 NA intron (ENSMUSG00000022680.14, intron 16 of 22) protein_coding-intron (ENSMUSG00000022680.14, intron 16 of 23) 23482 ENSMUSG00000099314.1 ENSMUSG00000099314 ENSMUST00000183701 Gm27734 miRNA Interval_105079 chr3 81034560 81037792 + 0 NA promoter-TSS (ENSMUSG00000028019.9) protein_coding-promoter-TSS (ENSMUSG00000028019.9) -1248 ENSMUSG00000028019.9 ENSMUSG00000028019 ENSMUST00000143721 Pdgfc protein_coding Interval_12470 chr1 193764492 193764695 + 0 NA Intergenic Intergenic -102416 ENSMUSG00000104182.1 ENSMUSG00000104182 ENSMUST00000194272 Gm21362 processed_pseudogene Interval_19845 chr10 110245964 110246565 + 0 NA intron (ENSMUSG00000020181.18, intron 2 of 40) protein_coding-intron (ENSMUSG00000020181.18, intron 2 of 4) -106095 ENSMUSG00000112595.1 ENSMUSG00000112595 ENSMUST00000218767 Gm47340 processed_pseudogene Interval_54151 chr14 65760829 65761040 + 0 NA intron (ENSMUSG00000022032.14, intron 8 of 8) protein_coding-intron (ENSMUSG00000022032.14, intron 8 of 8) -45003 ENSMUSG00000022033.9 ENSMUSG00000022033 ENSMUST00000139644 Pbk protein_coding Interval_33525 chr11 117037801 117038966 + 0 NA TTS (ENSMUSG00000086902.7) lincRNA-TTS (ENSMUSG00000086902.7) 1805 ENSMUSG00000086902.7 ENSMUSG00000086902 ENSMUST00000152401 Gm11728 lincRNA Interval_63688 chr15 102833877 102834235 + 0 NA Intergenic Intergenic 36561 ENSMUSG00000116500.1 ENSMUSG00000116500 ENSMUST00000229994 Gm36560 lincRNA Interval_133534 chr6 6187365 6189509 + 0 NA intron (ENSMUSG00000015112.15, intron 2 of 17) protein_coding-intron (ENSMUSG00000015112.15, intron 2 of 17) -14486 ENSMUSG00000015112.15 ENSMUSG00000015112 ENSMUST00000177698 Slc25a13 protein_coding Interval_100728 chr2 172132659 172133778 + 0 NA Intergenic Intergenic 32597 ENSMUSG00000083793.1 ENSMUSG00000083793 ENSMUST00000117182 Gm14274 processed_pseudogene Interval_71243 chr17 21531787 21533069 + 0 NA intron (ENSMUSG00000097781.1, intron 2 of 2) lincRNA-intron (ENSMUSG00000097781.1, intron 2 of 2) 2148 ENSMUSG00000117037.1 ENSMUSG00000117037 ENSMUST00000233488 Gm50433 transcribed_processed_pseudogene Interval_170180 chr9 105976143 105977233 + 0 NA Intergenic Intergenic -16045 ENSMUSG00000091345.9 ENSMUSG00000091345 ENSMUST00000189127 Col6a5 protein_coding Interval_28966 chr11 79622918 79623226 + 0 NA promoter-TSS (ENSMUSG00000087434.1) antisense-promoter-TSS (ENSMUSG00000087434.1) 91 ENSMUSG00000087434.1 ENSMUSG00000087434 ENSMUST00000145652 Rab11fip4os1 antisense Interval_88791 chr2 10921125 10921901 + 0 NA Intergenic Intergenic -22422 ENSMUSG00000081367.2 ENSMUSG00000081367 ENSMUST00000118090 Gm13265 processed_pseudogene Interval_110016 chr3 152477618 152479423 + 0 NA promoter-TSS (ENSMUSG00000039058.11) protein_coding-promoter-TSS (ENSMUSG00000039058.11) 48232 ENSMUSG00000039058.11 ENSMUSG00000039058 ENSMUST00000198552 Ak5 protein_coding Interval_169380 chr9 96806594 96807022 + 0 NA Intergenic Intergenic -2948 ENSMUSG00000100383.1 ENSMUSG00000100383 ENSMUST00000187301 Gm28688 processed_pseudogene Interval_72248 chr17 28800395 28802193 + 0 NA promoter-TSS (ENSMUSG00000063952.16) protein_coding-promoter-TSS (ENSMUSG00000063952.16) -63 ENSMUSG00000063952.16 ENSMUSG00000063952 ENSMUST00000127007 Brpf3 protein_coding Interval_53620 chr14 60152354 60152777 + 0 NA intron (ENSMUSG00000021983.16, intron 1 of 6) protein_coding-intron (ENSMUSG00000021983.16, intron 1 of 6) -1586 ENSMUSG00000072068.4 ENSMUSG00000072068 ENSMUST00000096813 Gm16261 processed_pseudogene Interval_91336 chr2 37866045 37867178 + 0 NA intron (ENSMUSG00000035392.17, intron 12 of 18) protein_coding-intron (ENSMUSG00000035392.17, intron 13 of 21) 75440 ENSMUSG00000035403.10 ENSMUSG00000035403 ENSMUST00000137693 Crb2 protein_coding Interval_142441 chr6 142345084 142346207 + 0 NA promoter-TSS (ENSMUSG00000041671.13) protein_coding-promoter-TSS (ENSMUSG00000041671.13) -22 ENSMUSG00000041671.13 ENSMUSG00000041671 ENSMUST00000153912 Pyroxd1 protein_coding Interval_54433 chr14 69726344 69726908 + 0 NA intron (ENSMUSG00000034190.9, intron 2 of 7) protein_coding-intron (ENSMUSG00000034190.9, intron 2 of 9) 5915 ENSMUSG00000034190.9 ENSMUSG00000034190 ENSMUST00000224601 Chmp7 protein_coding Interval_132937 chr5 148846994 148847378 + 0 NA Intergenic Intergenic 26419 ENSMUSG00000087647.2 ENSMUSG00000087647 ENSMUST00000136919 Gm15407 lincRNA Interval_44289 chr13 43364939 43366121 + 0 NA promoter-TSS (ENSMUSG00000054021.6) protein_coding-promoter-TSS (ENSMUSG00000054021.6) 24 ENSMUSG00000054021.6 ENSMUSG00000054021 ENSMUST00000222106 Sirt5 protein_coding Interval_86392 chr19 40201656 40203606 + 0 NA Intergenic Intergenic -9751 ENSMUSG00000098091.1 ENSMUSG00000098091 ENSMUST00000182456 Gm16470 processed_pseudogene Interval_110475 chr3 159056770 159057312 + 0 NA Intergenic Intergenic -19323 ENSMUSG00000106053.1 ENSMUSG00000106053 ENSMUST00000197341 Gm20752 lincRNA Interval_42317 chr13 12039561 12039763 + 0 NA intron (ENSMUSG00000021313.16, intron 1 of 2) protein_coding-intron (ENSMUSG00000021313.16, intron 1 of 104) 12393 ENSMUSG00000112947.1 ENSMUSG00000112947 ENSMUST00000220599 Gm47493 TEC Interval_50231 chr14 10737737 10738936 + 0 NA promoter-TSS (ENSMUSG00000089833.2) antisense-promoter-TSS (ENSMUSG00000089833.2) -199 ENSMUSG00000089833.2 ENSMUSG00000089833 ENSMUST00000160149 Fhitos antisense Interval_118946 chr4 134628595 134629414 + 0 NA intron (ENSMUSG00000037306.13, intron 2 of 8) protein_coding-intron (ENSMUSG00000037306.13, intron 3 of 12) -61153 ENSMUSG00000099289.1 ENSMUSG00000099289 ENSMUST00000185007 Mir6403 miRNA Interval_43088 chr13 23760268 23764922 + 0 NA promoter-TSS (ENSMUSG00000069265.2) protein_coding-promoter-TSS (ENSMUSG00000069265.2) -209 ENSMUSG00000069265.2 ENSMUSG00000069265 ENSMUST00000091701 H3c1 protein_coding Interval_163082 chr9 15072693 15073104 + 0 NA intron (ENSMUSG00000031936.9, intron 12 of 19) protein_coding-intron (ENSMUSG00000031936.9, intron 12 of 19) -29101 ENSMUSG00000031934.14 ENSMUSG00000031934 ENSMUST00000169288 Panx1 protein_coding Interval_79303 chr18 30295533 30296221 + 0 NA intron (ENSMUSG00000033628.15, intron 9 of 24) protein_coding-intron (ENSMUSG00000033628.15, intron 9 of 23) 22950 ENSMUSG00000033628.15 ENSMUSG00000033628 ENSMUST00000131405 Pik3c3 protein_coding Interval_151886 chr7 127308635 127310558 + 0 NA promoter-TSS (ENSMUSG00000030830.18) protein_coding-promoter-TSS (ENSMUSG00000030830.18) 12166 ENSMUSG00000030830.18 ENSMUSG00000030830 ENSMUST00000118405 Itgal protein_coding Interval_57369 chr15 10105302 10106323 + 0 NA Intergenic Intergenic 53986 ENSMUSG00000088156.1 ENSMUSG00000088156 ENSMUST00000157531 Gm26350 misc_RNA Interval_61693 chr15 83436605 83436902 + 0 NA intron (ENSMUSG00000016664.16, intron 1 of 11) protein_coding-intron (ENSMUSG00000016664.16, intron 1 of 11) -30690 ENSMUSG00000049414.7 ENSMUSG00000049414 ENSMUST00000079706 Gm5417 processed_pseudogene Interval_43824 chr13 37411005 37411372 + 0 NA intron (ENSMUSG00000021423.6, intron 3 of 4) protein_coding-intron (ENSMUSG00000021423.6, intron 3 of 4) 23961 ENSMUSG00000100760.1 ENSMUSG00000100760 ENSMUST00000190684 Gm4035 lincRNA Interval_60072 chr15 64533416 64533719 + 0 NA Intergenic Intergenic 99941 ENSMUSG00000115328.1 ENSMUSG00000115328 ENSMUST00000227641 Gm30691 lincRNA Interval_90245 chr2 29288705 29289853 + 0 NA Intergenic Intergenic -36286 ENSMUSG00000079499.9 ENSMUSG00000079499 ENSMUST00000028141 6530402F18Rik processed_transcript Interval_76966 chr17 85227153 85227408 + 0 NA intron (ENSMUSG00000071037.6, intron 3 of 10) protein_coding-intron (ENSMUSG00000071037.6, intron 3 of 10) 136674 ENSMUSG00000071037.6 ENSMUSG00000071037 ENSMUST00000234501 Camkmt protein_coding Interval_80477 chr18 42568994 42569324 + 0 NA intron (ENSMUSG00000024498.16, intron 18 of 21) protein_coding-intron (ENSMUSG00000024498.16, intron 17 of 20) -5050 ENSMUSG00000099024.1 ENSMUSG00000099024 ENSMUST00000184771 Gm27457 misc_RNA Interval_87287 chr19 47390884 47393160 + 0 NA intron (ENSMUSG00000053617.12, intron 2 of 4) protein_coding-intron (ENSMUSG00000053617.12, intron 3 of 14) 18337 ENSMUSG00000053617.12 ENSMUSG00000053617 ENSMUST00000237828 Sh3pxd2a protein_coding Interval_34163 chr11 121014695 121015564 + 0 NA Intergenic Intergenic -11345 ENSMUSG00000081686.1 ENSMUSG00000081686 ENSMUST00000118601 Gm11774 processed_pseudogene Interval_143522 chr7 11813798 11814546 + 0 NA Intergenic Intergenic -19808 ENSMUSG00000047655.2 ENSMUSG00000047655 ENSMUST00000050416 Vmn1r74 protein_coding Interval_93335 chr2 72035323 72036216 + 0 NA intron (ENSMUSG00000049044.16, intron 3 of 5) protein_coding-intron (ENSMUSG00000049044.16, intron 3 of 30) -35977 ENSMUSG00000088297.1 ENSMUSG00000088297 ENSMUST00000157672 Gm26408 snoRNA Interval_5190 chr1 86370515 86372433 + 0 NA exon (ENSMUSG00000073627.7, exon 3 of 3) processed_transcript-exon (ENSMUSG00000073627.7, exon 3 of 3) 6802 ENSMUSG00000110510.1 ENSMUSG00000110510 ENSMUST00000212977 Gm45908 processed_pseudogene Interval_122349 chr5 21626527 21626759 + 0 NA intron (ENSMUSG00000048520.16, intron 3 of 18) protein_coding-intron (ENSMUSG00000048520.16, intron 3 of 19) -12149 ENSMUSG00000106294.1 ENSMUSG00000106294 ENSMUST00000199822 Gm8539 processed_pseudogene Interval_118319 chr4 130273871 130275938 + 0 NA exon (ENSMUSG00000023232.17, exon 2 of 6) protein_coding-exon (ENSMUSG00000023232.17, exon 2 of 6) 641 ENSMUSG00000023232.17 ENSMUSG00000023232 ENSMUST00000154846 Serinc2 protein_coding Interval_98930 chr2 156081108 156081318 + 0 NA intron (ENSMUSG00000074643.12, intron 1 of 7) protein_coding-intron (ENSMUSG00000074643.12, intron 1 of 15) -4934 ENSMUSG00000074643.12 ENSMUSG00000074643 ENSMUST00000184152 Cpne1 protein_coding Interval_66883 chr16 38334508 38335114 + 0 NA intron (ENSMUSG00000022805.17, intron 3 of 8) protein_coding-intron (ENSMUSG00000022805.17, intron 3 of 16) 7001 ENSMUSG00000022805.17 ENSMUSG00000022805 ENSMUST00000114740 Maats1 protein_coding Interval_92817 chr2 65871917 65873074 + 0 NA intron (ENSMUSG00000044647.16, intron 2 of 2) protein_coding-intron (ENSMUSG00000044647.16, intron 1 of 5) -11876 ENSMUSG00000052865.5 ENSMUSG00000052865 ENSMUST00000155722 Gm13619 antisense Interval_83304 chr18 84015306 84015985 + 0 NA TTS (ENSMUSG00000046982.11) protein_coding-TTS (ENSMUSG00000046982.11) 27650 ENSMUSG00000117894.1 ENSMUSG00000117894 ENSMUST00000238017 Gm50421 processed_pseudogene Interval_92840 chr2 66229519 66229707 + 0 NA intron (ENSMUSG00000034848.17, intron 2 of 7) protein_coding-intron (ENSMUSG00000034848.17, intron 12 of 28) 5525 ENSMUSG00000034848.17 ENSMUSG00000034848 ENSMUST00000131503 Ttc21b protein_coding Interval_90843 chr2 32922974 32924685 + 0 NA TTS (ENSMUSG00000026796.16) protein_coding-TTS (ENSMUSG00000026796.16) 9118 ENSMUSG00000026796.16 ENSMUSG00000026796 ENSMUST00000151607 Fam129b protein_coding Interval_22695 chr11 13207584 13207778 + 0 NA Intergenic Intergenic 210015 ENSMUSG00000084055.1 ENSMUSG00000084055 ENSMUST00000117869 Gm12004 processed_pseudogene Interval_62029 chr15 85995847 85996659 + 0 NA intron (ENSMUSG00000016028.11, intron 1 of 34) protein_coding-intron (ENSMUSG00000016028.11, intron 1 of 34) -78480 ENSMUSG00000035900.18 ENSMUSG00000035900 ENSMUST00000147286 Gramd4 protein_coding Interval_39286 chr12 86470009 86471736 + 0 NA intron (ENSMUSG00000021255.17, intron 1 of 5) protein_coding-intron (ENSMUSG00000021255.17, intron 2 of 6) 755 ENSMUSG00000021255.17 ENSMUSG00000021255 ENSMUST00000136464 Esrrb protein_coding Interval_99681 chr2 164167805 164169069 + 0 NA exon (ENSMUSG00000040164.3, exon 3 of 4) protein_coding-exon (ENSMUSG00000040164.3, exon 3 of 4) 2676 ENSMUSG00000040164.3 ENSMUSG00000040164 ENSMUST00000045196 Kcns1 protein_coding Interval_92775 chr2 65350825 65351134 + 0 NA intron (ENSMUSG00000061171.15, intron 6 of 6) protein_coding-intron (ENSMUSG00000061171.15, intron 6 of 11) 13021 ENSMUSG00000061171.15 ENSMUSG00000061171 ENSMUST00000141690 Slc38a11 protein_coding Interval_46314 chr13 63814652 63815767 + 0 NA promoter-TSS (ENSMUSG00000021470.19) protein_coding-promoter-TSS (ENSMUSG00000021470.19) -266 ENSMUSG00000021470.19 ENSMUSG00000021470 ENSMUST00000222300 Ercc6l2 protein_coding Interval_121846 chr5 8791533 8792285 + 0 NA intron (ENSMUSG00000097279.1, intron 1 of 2) antisense-intron (ENSMUSG00000097279.1, intron 1 of 2) 6614 ENSMUSG00000097279.1 ENSMUSG00000097279 ENSMUST00000181058 Gm5106 antisense Interval_39371 chr12 86958933 86959232 + 0 NA intron (ENSMUSG00000034157.12, intron 2 of 2) protein_coding-intron (ENSMUSG00000034157.12, intron 2 of 3) 6425 ENSMUSG00000034157.12 ENSMUSG00000034157 ENSMUST00000191463 Cipc protein_coding Interval_67553 chr16 50753562 50753767 + 0 NA Intergenic Intergenic -20981 ENSMUSG00000022639.14 ENSMUSG00000022639 ENSMUST00000169791 Dubr lincRNA Interval_2673 chr1 43168069 43169085 + 0 NA intron (ENSMUSG00000008136.14, intron 1 of 5) protein_coding-intron (ENSMUSG00000008136.14, intron 1 of 5) -20579 ENSMUSG00000094497.1 ENSMUSG00000094497 ENSMUST00000178557 Gm8210 processed_pseudogene Interval_91188 chr2 35739538 35741217 + 0 NA Intergenic Intergenic 25502 ENSMUSG00000107106.1 ENSMUSG00000107106 ENSMUST00000202120 Gm43760 TEC Interval_161777 chr8 122719639 122720611 + 0 NA intron (ENSMUSG00000092329.1, intron 1 of 15) protein_coding-intron (ENSMUSG00000092329.1, intron 1 of 15) -21223 ENSMUSG00000006362.16 ENSMUSG00000006362 ENSMUST00000148630 Cbfa2t3 protein_coding Interval_112035 chr4 33374997 33375226 + 0 NA intron (ENSMUSG00000028274.17, intron 11 of 15) protein_coding-intron (ENSMUSG00000028274.17, intron 11 of 15) 50213 ENSMUSG00000028274.17 ENSMUSG00000028274 ENSMUST00000146870 Rngtt protein_coding Interval_98722 chr2 154501839 154502452 + 0 NA intron (ENSMUSG00000038533.15, intron 2 of 2) protein_coding-intron (ENSMUSG00000038533.15, intron 2 of 10) -44940 ENSMUSG00000038523.10 ENSMUSG00000038523 ENSMUST00000109709 1700003F12Rik protein_coding Interval_49701 chr13 114081454 114081933 + 0 NA intron (ENSMUSG00000042348.10, intron 5 of 5) protein_coding-intron (ENSMUSG00000042348.10, intron 4 of 4) 38723 ENSMUSG00000114696.1 ENSMUSG00000114696 ENSMUST00000223997 Gm47479 TEC Interval_32393 chr11 107326019 107326472 + 0 NA intron (ENSMUSG00000040430.18, intron 1 of 2) protein_coding-intron (ENSMUSG00000040430.18, intron 1 of 7) -4463 ENSMUSG00000081995.1 ENSMUSG00000081995 ENSMUST00000119399 Gm11719 processed_pseudogene Interval_10995 chr1 177840036 177840510 + 0 NA intron (ENSMUSG00000102483.2, intron 5 of 21) protein_coding-intron (ENSMUSG00000102483.2, intron 5 of 21) 31842 ENSMUSG00000102483.2 ENSMUSG00000102483 ENSMUST00000194528 Catspere1 protein_coding Interval_48477 chr13 99331167 99331962 + 0 NA intron (ENSMUSG00000021650.7, intron 6 of 9) protein_coding-intron (ENSMUSG00000021650.7, intron 6 of 9) 13141 ENSMUSG00000021650.7 ENSMUSG00000021650 ENSMUST00000022153 Ptcd2 protein_coding Interval_72091 chr17 27989720 27990219 + 0 NA intron (ENSMUSG00000024219.16, intron 8 of 23) protein_coding-intron (ENSMUSG00000024219.16, intron 9 of 24) 7577 ENSMUSG00000117130.1 ENSMUSG00000117130 ENSMUST00000232846 Gm49802 sense_intronic Interval_102820 chr3 31458070 31460323 + 0 NA Intergenic Intergenic 118184 ENSMUSG00000103998.1 ENSMUSG00000103998 ENSMUST00000193926 Gm38025 lincRNA Interval_33021 chr11 113718142 113718441 + 0 NA Intergenic Intergenic -8771 ENSMUSG00000018727.19 ENSMUSG00000018727 ENSMUST00000151396 Cpsf4l protein_coding Interval_11303 chr1 180843776 180844850 + 0 NA Intergenic Intergenic 10145 ENSMUSG00000103979.1 ENSMUSG00000103979 ENSMUST00000193226 Gm20305 processed_pseudogene Interval_122413 chr5 22343707 22345548 + 0 NA promoter-TSS (ENSMUSG00000042453.14) protein_coding-promoter-TSS (ENSMUSG00000042453.14) 10185 ENSMUSG00000090226.1 ENSMUSG00000090226 ENSMUST00000161473 Gm16110 antisense Interval_98085 chr2 147798044 147799177 + 0 NA Intergenic Intergenic 76268 ENSMUSG00000065791.1 ENSMUSG00000065791 ENSMUST00000083857 Gm25516 snRNA Interval_45764 chr13 57858501 57858732 + 0 NA intron (ENSMUSG00000056222.15, intron 2 of 10) protein_coding-intron (ENSMUSG00000056222.15, intron 1 of 9) 49716 ENSMUSG00000056222.15 ENSMUSG00000056222 ENSMUST00000185905 Spock1 protein_coding Interval_63298 chr15 100172118 100173045 + 0 NA intron (ENSMUSG00000023026.16, intron 16 of 37) protein_coding-intron (ENSMUSG00000023026.16, intron 11 of 32) 9854 ENSMUSG00000023026.16 ENSMUSG00000023026 ENSMUST00000135658 Dip2b protein_coding Interval_96302 chr2 121408184 121408598 + 0 NA intron (ENSMUSG00000033486.14, intron 4 of 12) protein_coding-intron (ENSMUSG00000033486.14, intron 4 of 12) 3150 ENSMUSG00000084140.1 ENSMUSG00000084140 ENSMUST00000118670 Gm14000 processed_pseudogene Interval_3250 chr1 55177067 55177452 + 0 NA intron (ENSMUSG00000025978.14, intron 7 of 7) protein_coding-intron (ENSMUSG00000025978.14, intron 8 of 8) -16206 ENSMUSG00000061863.6 ENSMUSG00000061863 ENSMUST00000161440 Gm6822 processed_pseudogene Interval_123417 chr5 32390539 32390745 + 0 NA intron (ENSMUSG00000107036.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000107036.1, intron 1 of 1) 2664 ENSMUSG00000107036.1 ENSMUSG00000107036 ENSMUST00000202171 Gm7596 lincRNA Interval_39130 chr12 85338817 85339785 + 0 NA promoter-TSS (ENSMUSG00000034290.9) protein_coding-promoter-TSS (ENSMUSG00000034290.9) 61 ENSMUSG00000034290.9 ENSMUSG00000034290 ENSMUST00000040992 Nek9 protein_coding Interval_150167 chr7 107552234 107554104 + 0 NA Intergenic Intergenic -14597 ENSMUSG00000051041.8 ENSMUSG00000051041 ENSMUST00000239087 Olfml1 protein_coding Interval_155925 chr8 41078371 41078794 + 0 NA intron (ENSMUSG00000045636.16, intron 2 of 3) protein_coding-intron (ENSMUSG00000045636.16, intron 2 of 13) 25472 ENSMUSG00000085672.1 ENSMUSG00000085672 ENSMUST00000125903 Gm16193 antisense Interval_130966 chr5 134303582 134304418 + 0 NA intron (ENSMUSG00000060261.15, intron 1 of 33) protein_coding-intron (ENSMUSG00000060261.15, intron 1 of 34) -4787 ENSMUSG00000107076.1 ENSMUSG00000107076 ENSMUST00000201201 Gm43480 sense_intronic Interval_50542 chr14 14853059 14853463 + 0 NA intron (ENSMUSG00000042567.20, intron 12 of 35) protein_coding-intron (ENSMUSG00000042567.20, intron 11 of 34) 49846 ENSMUSG00000042567.20 ENSMUSG00000042567 ENSMUST00000136826 Nek10 protein_coding Interval_167430 chr9 69248972 69249281 + 0 NA intron (ENSMUSG00000032238.17, intron 3 of 5) protein_coding-intron (ENSMUSG00000032238.17, intron 2 of 10) 115121 ENSMUSG00000086648.1 ENSMUSG00000086648 ENSMUST00000152570 Gm15511 antisense Interval_70740 chr17 14097811 14100735 + 0 NA Intergenic Intergenic 7177 ENSMUSG00000099476.1 ENSMUSG00000099476 ENSMUST00000188802 4930488N24Rik unprocessed_pseudogene Interval_18881 chr10 92246931 92247465 + 0 NA intron (ENSMUSG00000098040.1, intron 7 of 8) lincRNA-intron (ENSMUSG00000098040.1, intron 7 of 8) -11392 ENSMUSG00000111776.1 ENSMUSG00000111776 ENSMUST00000215960 Gm47124 processed_pseudogene Interval_129233 chr5 118351294 118351681 + 0 NA Intergenic Intergenic 45843 ENSMUSG00000106812.1 ENSMUSG00000106812 ENSMUST00000201179 Gm28563 lincRNA Interval_162704 chr9 7925702 7926123 + 0 NA Intergenic Intergenic -39926 ENSMUSG00000092185.1 ENSMUSG00000092185 ENSMUST00000174760 Gm20416 processed_transcript Interval_78411 chr18 12637953 12640058 + 0 NA intron (ENSMUSG00000024424.15, intron 1 of 7) protein_coding-intron (ENSMUSG00000024424.15, intron 1 of 13) 5359 ENSMUSG00000117418.1 ENSMUSG00000117418 ENSMUST00000234209 Gm50063 antisense Interval_96754 chr2 127764241 127764660 + 0 NA intron (ENSMUSG00000027378.16, intron 10 of 19) protein_coding-intron (ENSMUSG00000027378.16, intron 10 of 19) -10380 ENSMUSG00000027378.16 ENSMUSG00000027378 ENSMUST00000148033 Nphp1 protein_coding Interval_139448 chr6 100242435 100242967 + 0 NA intron (ENSMUSG00000072872.3, intron 1 of 1) protein_coding-intron (ENSMUSG00000072872.3, intron 2 of 4) -5431 ENSMUSG00000108269.1 ENSMUSG00000108269 ENSMUST00000203798 Gm18422 transcribed_processed_pseudogene Interval_23042 chr11 19205156 19205364 + 0 NA Intergenic Intergenic -87826 ENSMUSG00000102585.1 ENSMUSG00000102585 ENSMUST00000193150 Gm37439 TEC Interval_68713 chr16 84920110 84920446 + 0 NA Intergenic Intergenic -26446 ENSMUSG00000116668.1 ENSMUSG00000116668 ENSMUST00000231785 Gm49568 processed_pseudogene Interval_171408 chr9 117815570 117815952 + 0 NA intron (ENSMUSG00000039607.17, intron 1 of 3) protein_coding-intron (ENSMUSG00000039607.17, intron 1 of 3) 56920 ENSMUSG00000039607.17 ENSMUSG00000039607 ENSMUST00000210659 Rbms3 protein_coding Interval_36151 chr12 36538060 36538483 + 0 NA intron (ENSMUSG00000043153.6, intron 7 of 8) protein_coding-intron (ENSMUSG00000043153.6, intron 8 of 9) -1086 ENSMUSG00000114135.1 ENSMUSG00000114135 ENSMUST00000223284 Gm7252 processed_pseudogene Interval_29167 chr11 80923610 80924085 + 0 NA intron (ENSMUSG00000020704.13, intron 3 of 9) protein_coding-intron (ENSMUSG00000020704.13, intron 3 of 9) 65482 ENSMUSG00000053184.15 ENSMUSG00000053184 ENSMUST00000103222 Spaca3 protein_coding Interval_117122 chr4 119707873 119708062 + 0 NA Intergenic Intergenic -49186 ENSMUSG00000032978.14 ENSMUSG00000032978 ENSMUST00000044426 Guca2b protein_coding Interval_156827 chr8 60900198 60900591 + 0 NA intron (ENSMUSG00000038005.15, intron 4 of 6) protein_coding-intron (ENSMUSG00000038005.15, intron 5 of 7) -5637 ENSMUSG00000038005.15 ENSMUSG00000038005 ENSMUST00000211016 Hpf1 protein_coding Interval_51790 chr14 32210686 32211308 + 0 NA intron (ENSMUSG00000021911.16, intron 4 of 8) protein_coding-intron (ENSMUSG00000021911.16, intron 4 of 17) -9151 ENSMUSG00000013701.13 ENSMUSG00000013701 ENSMUST00000168813 Timm23 protein_coding Interval_166442 chr9 59517075 59517621 + 0 NA Intergenic Intergenic -4483 ENSMUSG00000111852.1 ENSMUSG00000111852 ENSMUST00000217109 Gm33180 lincRNA Interval_161470 chr8 120601287 120601699 + 0 NA intron (ENSMUSG00000092329.1, intron 1 of 15) protein_coding-intron (ENSMUSG00000092329.1, intron 1 of 15) 2941 ENSMUSG00000097702.1 ENSMUSG00000097702 ENSMUST00000181041 Gm26739 lincRNA Interval_13627 chr10 20266567 20267640 + 0 NA TTS (ENSMUSG00000111447.1) antisense-TTS (ENSMUSG00000111447.1) 19528 ENSMUSG00000111447.1 ENSMUSG00000111447 ENSMUST00000215889 Gm48249 antisense Interval_107462 chr3 107868441 107868661 + 0 NA promoter-TSS (ENSMUSG00000105944.1) processed_pseudogene-promoter-TSS (ENSMUSG00000105944.1) 92 ENSMUSG00000105944.1 ENSMUSG00000105944 ENSMUST00000196916 Gm5075 processed_pseudogene Interval_160342 chr8 108594934 108595348 + 0 NA intron (ENSMUSG00000038872.10, intron 4 of 15) protein_coding-intron (ENSMUSG00000038872.10, intron 4 of 15) -10546 ENSMUSG00000110613.1 ENSMUSG00000110613 ENSMUST00000211953 Lncbate1 lincRNA Interval_5077 chr1 84820350 84821001 + 0 NA exon (ENSMUSG00000104503.1, exon 1 of 1) TEC-exon (ENSMUSG00000104503.1, exon 1 of 1) 4008 ENSMUSG00000104503.1 ENSMUSG00000104503 ENSMUST00000192396 Gm37738 TEC Interval_57250 chr15 8129411 8129910 + 0 NA promoter-TSS (ENSMUSG00000022142.8) protein_coding-promoter-TSS (ENSMUSG00000022142.8) -21423 ENSMUSG00000022142.8 ENSMUSG00000022142 ENSMUST00000230647 Nup155 protein_coding Interval_116128 chr4 107987620 107987863 + 0 NA intron (ENSMUSG00000008932.10, intron 2 of 10) protein_coding-intron (ENSMUSG00000008932.10, intron 2 of 10) 19407 ENSMUSG00000008932.10 ENSMUSG00000008932 ENSMUST00000124190 Slc1a7 protein_coding Interval_169442 chr9 97330476 97331437 + 0 NA Intergenic Intergenic -18660 ENSMUSG00000087167.1 ENSMUSG00000087167 ENSMUST00000127307 Gm15891 antisense Interval_6831 chr1 119938664 119939310 + 0 NA intron (ENSMUSG00000036962.12, intron 15 of 23) protein_coding-intron (ENSMUSG00000036962.12, intron 14 of 22) -25779 ENSMUSG00000036975.5 ENSMUSG00000036975 ENSMUST00000037906 Tmem177 protein_coding Interval_87840 chr19 56406864 56407860 + 0 NA intron (ENSMUSG00000025076.11, intron 2 of 6) protein_coding-intron (ENSMUSG00000025076.11, intron 2 of 6) -18323 ENSMUSG00000025076.11 ENSMUSG00000025076 ENSMUST00000237765 Casp7 protein_coding Interval_92396 chr2 59512922 59513134 + 0 NA Intergenic Intergenic 28359 ENSMUSG00000026989.5 ENSMUSG00000026989 ENSMUST00000144415 Dapl1 protein_coding Interval_112674 chr4 43982219 43984392 + 0 NA promoter-TSS (ENSMUSG00000070999.2) protein_coding-promoter-TSS (ENSMUSG00000070999.2) -178 ENSMUSG00000070999.2 ENSMUSG00000070999 ENSMUST00000095107 Ccin protein_coding Interval_147379 chr7 66280451 66281057 + 0 NA intron (ENSMUSG00000015133.17, intron 2 of 14) protein_coding-intron (ENSMUSG00000015133.17, intron 23 of 33) -18284 ENSMUSG00000015133.17 ENSMUSG00000015133 ENSMUST00000154893 Lrrk1 protein_coding Interval_73312 chr17 36144854 36147053 + 0 NA promoter-TSS (ENSMUSG00000073403.11) transcribed_unprocessed_pseudogene-promoter-TSS (ENSMUSG00000073403.11) -209 ENSMUSG00000073403.11 ENSMUSG00000073403 ENSMUST00000174094 Gm10499 transcribed_unprocessed_pseudogene Interval_90936 chr2 33583296 33583760 + 0 NA intron (ENSMUSG00000038765.14, intron 2 of 7) protein_coding-intron (ENSMUSG00000038765.14, intron 2 of 7) -30870 ENSMUSG00000104403.1 ENSMUSG00000104403 ENSMUST00000193312 Gm38011 TEC Interval_96501 chr2 125122789 125124089 + 0 NA promoter-TSS (ENSMUSG00000027201.16) protein_coding-promoter-TSS (ENSMUSG00000027201.16) 187 ENSMUSG00000027201.16 ENSMUSG00000027201 ENSMUST00000149911 Myef2 protein_coding Interval_45175 chr13 52940946 52941288 + 0 NA Intergenic Intergenic 23615 ENSMUSG00000065771.1 ENSMUSG00000065771 ENSMUST00000083837 n-R5s54 rRNA Interval_37877 chr12 72744873 72746172 + 0 NA Intergenic Intergenic -3940 ENSMUSG00000112989.1 ENSMUSG00000112989 ENSMUST00000221318 Gm48143 processed_pseudogene Interval_63998 chr16 5131494 5132838 + 0 NA intron (ENSMUSG00000039457.4, intron 1 of 15) protein_coding-intron (ENSMUSG00000039457.4, intron 1 of 21) 244 ENSMUSG00000039457.4 ENSMUSG00000039457 ENSMUST00000230554 Ppl protein_coding Interval_154257 chr8 13850441 13850725 + 0 NA Intergenic Intergenic -12194 ENSMUSG00000057116.5 ENSMUSG00000057116 ENSMUST00000071308 AF366264 protein_coding Interval_84113 chr19 7274674 7277969 + 0 NA TTS (ENSMUSG00000024969.15) protein_coding-TTS (ENSMUSG00000024969.15) 8996 ENSMUSG00000024968.14 ENSMUSG00000024968 ENSMUST00000134167 Rcor2 protein_coding Interval_37527 chr12 69582302 69583468 + 0 NA promoter-TSS (ENSMUSG00000049882.10) protein_coding-promoter-TSS (ENSMUSG00000049882.10) 225 ENSMUSG00000049882.10 ENSMUSG00000049882 ENSMUST00000238563 Vcpkmt protein_coding Interval_55461 chr14 87532979 87533530 + 0 NA intron (ENSMUSG00000022019.16, intron 12 of 13) protein_coding-intron (ENSMUSG00000022019.16, intron 12 of 13) -5845 ENSMUSG00000022019.16 ENSMUSG00000022019 ENSMUST00000227304 Tdrd3 protein_coding Interval_73412 chr17 37056141 37056380 + 0 NA TTS (ENSMUSG00000024462.17) protein_coding-TTS (ENSMUSG00000024462.17) 548 ENSMUSG00000024462.17 ENSMUSG00000024462 ENSMUST00000174071 Gabbr1 protein_coding Interval_144452 chr7 25232492 25232832 + 0 NA intron (ENSMUSG00000057177.12, intron 4 of 10) protein_coding-intron (ENSMUSG00000057177.12, intron 4 of 10) -1418 ENSMUSG00000057177.12 ENSMUSG00000057177 ENSMUST00000206654 Gsk3a protein_coding Interval_156981 chr8 63759777 63761459 + 0 NA Intergenic Intergenic -17433 ENSMUSG00000098106.1 ENSMUSG00000098106 ENSMUST00000182057 Gm5350 processed_pseudogene Interval_10216 chr1 167254451 167256022 + 0 NA intron (ENSMUSG00000026558.13, intron 1 of 5) protein_coding-intron (ENSMUSG00000026558.13, intron 1 of 6) 12779 ENSMUSG00000103139.1 ENSMUSG00000103139 ENSMUST00000193076 Gm37982 antisense Interval_47814 chr13 93406174 93406578 + 0 NA Intergenic Intergenic -4407 ENSMUSG00000114019.1 ENSMUSG00000114019 ENSMUST00000220564 Gm47155 TEC Interval_71012 chr17 17199858 17200133 + 0 NA Intergenic Intergenic -62355 ENSMUSG00000116802.1 ENSMUSG00000116802 ENSMUST00000231376 Gm5165 lincRNA Interval_153756 chr8 6973848 6974341 + 0 NA Intergenic Intergenic 28661 ENSMUSG00000109463.1 ENSMUSG00000109463 ENSMUST00000207758 Gm7506 processed_pseudogene Interval_82082 chr18 67623322 67624021 + 0 NA intron (ENSMUSG00000073542.3, intron 8 of 10) protein_coding-intron (ENSMUSG00000073542.3, intron 9 of 11) 15318 ENSMUSG00000073542.3 ENSMUSG00000073542 ENSMUST00000237975 Cep76 protein_coding Interval_5999 chr1 93824761 93826432 + 0 NA promoter-TSS (ENSMUSG00000073609.9) protein_coding-promoter-TSS (ENSMUSG00000073609.9) -689 ENSMUSG00000073609.9 ENSMUSG00000073609 ENSMUST00000188532 D2hgdh protein_coding Interval_122793 chr5 25536155 25537647 + 0 NA Intergenic Intergenic -4470 ENSMUSG00000105744.1 ENSMUSG00000105744 ENSMUST00000199695 Gm43141 processed_pseudogene Interval_25529 chr11 49599370 49599747 + 0 NA Intergenic Intergenic -3633 ENSMUSG00000081791.1 ENSMUSG00000081791 ENSMUST00000120001 Gm12190 processed_pseudogene Interval_92257 chr2 57374271 57375219 + 0 NA Intergenic Intergenic 50964 ENSMUSG00000084338.5 ENSMUSG00000084338 ENSMUST00000121893 Gm13531 processed_pseudogene Interval_159906 chr8 105066220 105067533 + 0 NA Intergenic Intergenic -15408 ENSMUSG00000110488.1 ENSMUSG00000110488 ENSMUST00000213031 Gm45724 TEC Interval_154135 chr8 12969212 12969569 + 0 NA intron (ENSMUSG00000031442.21, intron 2 of 2) protein_coding-intron (ENSMUSG00000031442.21, intron 3 of 29) 2639 ENSMUSG00000082682.1 ENSMUSG00000082682 ENSMUST00000121154 Gm15349 processed_pseudogene Interval_50553 chr14 15046970 15047403 + 0 NA intron (ENSMUSG00000114538.1, intron 6 of 10) lincRNA-intron (ENSMUSG00000114538.1, intron 6 of 10) -5017 ENSMUSG00000114542.1 ENSMUSG00000114542 ENSMUST00000224124 Gm18142 processed_pseudogene Interval_57328 chr15 8793042 8793442 + 0 NA Intergenic Intergenic -82833 ENSMUSG00000005360.14 ENSMUSG00000005360 ENSMUST00000126747 Slc1a3 protein_coding Interval_159125 chr8 90854512 90855415 + 0 NA intron (ENSMUSG00000056608.14, intron 2 of 39) protein_coding-intron (ENSMUSG00000056608.14, intron 2 of 39) -5117 ENSMUSG00000110166.1 ENSMUSG00000110166 ENSMUST00000209775 Gm45641 antisense Interval_127854 chr5 108268232 108269674 + 0 NA promoter-TSS (ENSMUSG00000029265.4) protein_coding-promoter-TSS (ENSMUSG00000029265.4) -7967 ENSMUSG00000029265.4 ENSMUSG00000029265 ENSMUST00000154862 Dr1 protein_coding Interval_165826 chr9 53598664 53599274 + 0 NA intron (ENSMUSG00000032047.5, intron 1 of 1) protein_coding-intron (ENSMUSG00000032047.5, intron 1 of 11) -15212 ENSMUSG00000032047.5 ENSMUSG00000032047 ENSMUST00000167130 Acat1 protein_coding Interval_75765 chr17 71153167 71153715 + 0 NA TTS (ENSMUSG00000117276.1) processed_pseudogene-TTS (ENSMUSG00000117276.1) 579 ENSMUSG00000117276.1 ENSMUSG00000117276 ENSMUST00000233369 Gm49910 processed_pseudogene Interval_29035 chr11 80011378 80011974 + 0 NA intron (ENSMUSG00000017548.15, intron 5 of 14) protein_coding-intron (ENSMUSG00000017548.15, intron 6 of 15) 18570 ENSMUSG00000017548.15 ENSMUSG00000017548 ENSMUST00000144188 Suz12 protein_coding Interval_104449 chr3 65808672 65809024 + 0 NA intron (ENSMUSG00000074579.14, intron 10 of 12) protein_coding-intron (ENSMUSG00000074579.14, intron 10 of 12) -37231 ENSMUSG00000065330.1 ENSMUSG00000065330 ENSMUST00000083396 Gm25755 snRNA Interval_64783 chr16 15688531 15688845 + 0 NA intron (ENSMUSG00000022672.8, intron 23 of 85) protein_coding-intron (ENSMUSG00000022672.8, intron 23 of 85) 50822 ENSMUSG00000022672.8 ENSMUSG00000022672 ENSMUST00000023352 Prkdc protein_coding Interval_161733 chr8 122413351 122415052 + 0 NA intron (ENSMUSG00000017478.15, intron 6 of 7) protein_coding-intron (ENSMUSG00000017478.15, intron 17 of 18) -7819 ENSMUSG00000046108.3 ENSMUSG00000046108 ENSMUST00000050963 Il17c protein_coding Interval_125894 chr5 75487362 75488255 + 0 NA Intergenic Intergenic 73342 ENSMUSG00000089078.1 ENSMUSG00000089078 ENSMUST00000158453 Gm24502 snRNA Interval_133284 chr5 151152555 151153001 + 0 NA intron (ENSMUSG00000107011.1, intron 2 of 5) protein_coding-intron (ENSMUSG00000016128.14, intron 1 of 13) -44043 ENSMUSG00000016128.14 ENSMUSG00000016128 ENSMUST00000202866 Stard13 protein_coding Interval_119991 chr4 141270056 141270948 + 0 NA Intergenic Intergenic -4486 ENSMUSG00000085774.1 ENSMUSG00000085774 ENSMUST00000127875 Gm13055 antisense Interval_68896 chr16 88050833 88051324 + 0 NA intron (ENSMUSG00000022935.16, intron 3 of 16) protein_coding-intron (ENSMUSG00000022935.16, intron 3 of 15) 238786 ENSMUSG00000022935.16 ENSMUSG00000022935 ENSMUST00000210910 Grik1 protein_coding Interval_73884 chr17 45217763 45218221 + 0 NA Intergenic Intergenic 8026 ENSMUSG00000096425.1 ENSMUSG00000096425 ENSMUST00000178626 Gm24979 miRNA Interval_72726 chr17 31776127 31777754 + 0 NA Intergenic Intergenic -12586 ENSMUSG00000117355.1 ENSMUSG00000117355 ENSMUST00000234824 Gm49999 lincRNA Interval_136662 chr6 57316795 57317149 + 0 NA Intergenic Intergenic 4033 ENSMUSG00000093621.1 ENSMUSG00000093621 ENSMUST00000176165 Vmn1r-ps10 unprocessed_pseudogene Interval_15433 chr10 46392300 46392659 + 0 NA Intergenic Intergenic 14870 ENSMUSG00000094681.1 ENSMUSG00000094681 ENSMUST00000180247 Gm25740 snRNA Interval_65841 chr16 29728815 29729294 + 0 NA Intergenic Intergenic 25258 ENSMUSG00000116814.1 ENSMUSG00000116814 ENSMUST00000232037 Gm49636 lincRNA Interval_102678 chr3 29729883 29730353 + 0 NA Intergenic Intergenic -41166 ENSMUSG00000103095.1 ENSMUSG00000103095 ENSMUST00000191640 Gm37557 processed_pseudogene Interval_21054 chr10 125632693 125633841 + 0 NA Intergenic Intergenic 120736 ENSMUSG00000112100.1 ENSMUSG00000112100 ENSMUST00000219250 Gm9102 processed_pseudogene Interval_171124 chr9 114650638 114651513 + 0 NA Intergenic Intergenic -3040 ENSMUSG00000111744.1 ENSMUSG00000111744 ENSMUST00000214787 Gm7780 processed_pseudogene Interval_25595 chr11 50044386 50044686 + 0 NA intron (ENSMUSG00000020376.17, intron 1 of 7) protein_coding-intron (ENSMUSG00000020376.17, intron 1 of 7) 19189 ENSMUSG00000020376.17 ENSMUSG00000020376 ENSMUST00000143607 Rnf130 protein_coding Interval_116922 chr4 118238001 118238514 + 0 NA intron (ENSMUSG00000033295.14, intron 8 of 9) protein_coding-intron (ENSMUSG00000033295.14, intron 7 of 32) -27693 ENSMUSG00000098596.1 ENSMUSG00000098596 ENSMUST00000184953 Mir7226 miRNA Interval_114867 chr4 86557378 86559806 + 0 NA promoter-TSS (ENSMUSG00000028492.13) protein_coding-promoter-TSS (ENSMUSG00000028492.13) 146 ENSMUSG00000085108.1 ENSMUSG00000085108 ENSMUST00000131790 Saxo1os antisense Interval_132694 chr5 147204632 147205501 + 0 NA Intergenic Intergenic -4813 ENSMUSG00000077735.1 ENSMUSG00000077735 ENSMUST00000104547 Gm24556 snoRNA Interval_40350 chr12 104069759 104070211 + 0 NA Intergenic Intergenic -10664 ENSMUSG00000092075.1 ENSMUSG00000092075 ENSMUST00000166601 Serpina4-ps1 unprocessed_pseudogene Interval_85802 chr19 31811512 31812041 + 0 NA Intergenic Intergenic -57005 ENSMUSG00000052595.8 ENSMUSG00000052595 ENSMUST00000225165 A1cf protein_coding Interval_145909 chr7 41611721 41612181 + 0 NA promoter-TSS (ENSMUSG00000091474.2) protein_coding-promoter-TSS (ENSMUSG00000091474.2) -33 ENSMUSG00000091474.2 ENSMUSG00000091474 ENSMUST00000206757 2610021A01Rik protein_coding Interval_127941 chr5 109670929 109671367 + 0 NA Intergenic Intergenic 19893 ENSMUSG00000072763.2 ENSMUSG00000072763 ENSMUST00000092720 5430403G16Rik protein_coding Interval_46895 chr13 73263323 73264003 + 0 NA intron (ENSMUSG00000021604.15, intron 1 of 5) protein_coding-intron (ENSMUSG00000021604.15, intron 1 of 5) 3184 ENSMUSG00000021604.15 ENSMUSG00000021604 ENSMUST00000022095 Irx4 protein_coding Interval_129182 chr5 118036699 118038369 + 0 NA intron (ENSMUSG00000029359.13, intron 1 of 7) protein_coding-intron (ENSMUSG00000029359.13, intron 1 of 7) 1503 ENSMUSG00000029359.13 ENSMUSG00000029359 ENSMUST00000145526 Tesc protein_coding Interval_149785 chr7 101476967 101479312 + 0 NA intron (ENSMUSG00000110195.1, intron 2 of 4) protein_coding-intron (ENSMUSG00000030653.17, intron 3 of 31) 2763 ENSMUSG00000065446.1 ENSMUSG00000065446 ENSMUST00000083512 Mir139 miRNA Interval_144621 chr7 27178189 27179805 + 0 NA promoter-TSS (ENSMUSG00000053291.15) protein_coding-promoter-TSS (ENSMUSG00000053291.15) -187 ENSMUSG00000053291.15 ENSMUSG00000053291 ENSMUST00000141906 Rab4b protein_coding Interval_54053 chr14 64802415 64803043 + 0 NA intron (ENSMUSG00000060012.9, intron 38 of 39) protein_coding-intron (ENSMUSG00000060012.9, intron 38 of 39) -36371 ENSMUSG00000098837.1 ENSMUSG00000098837 ENSMUST00000184830 Gm20111 processed_pseudogene Interval_152055 chr7 128640316 128640493 + 0 NA intron (ENSMUSG00000042105.18, intron 2 of 9) protein_coding-intron (ENSMUSG00000042105.18, intron 2 of 19) -44126 ENSMUSG00000096557.2 ENSMUSG00000096557 ENSMUST00000179317 Gm7258 processed_pseudogene Interval_107951 chr3 117310436 117311336 + 0 NA Intergenic Intergenic -12055 ENSMUSG00000092666.1 ENSMUSG00000092666 ENSMUST00000174925 Gm22408 miRNA Interval_170259 chr9 106503609 106504623 + 0 NA intron (ENSMUSG00000118396.2, intron 4 of 4) protein_coding-intron (ENSMUSG00000118396.2, intron 4 of 4) 4115 ENSMUSG00000066383.7 ENSMUSG00000066383 ENSMUST00000215037 Iqcf1 protein_coding Interval_149706 chr7 100813535 100813745 + 0 NA TTS (ENSMUSG00000029461.17) protein_coding-TTS (ENSMUSG00000029461.17) 2288 ENSMUSG00000109109.1 ENSMUSG00000109109 ENSMUST00000208745 Gm44953 TEC Interval_131042 chr5 134733932 134734124 + 0 NA intron (ENSMUSG00000029675.12, intron 4 of 23) protein_coding-intron (ENSMUSG00000029675.12, intron 4 of 36) -4922 ENSMUSG00000029675.12 ENSMUSG00000029675 ENSMUST00000201399 Eln protein_coding Interval_96345 chr2 121826207 121827083 + 0 NA Intergenic Intergenic 40072 ENSMUSG00000086913.1 ENSMUSG00000086913 ENSMUST00000131514 Gm14019 antisense Interval_173750 chrX 103449147 103449748 + 0 NA exon (ENSMUSG00000085715.2, exon 1 of 2) antisense-exon (ENSMUSG00000085715.2, exon 1 of 2) 1725 ENSMUSG00000085715.2 ENSMUSG00000085715 ENSMUST00000211291 Tsix antisense Interval_100400 chr2 168831216 168832031 + 0 NA Intergenic Intergenic 50545 ENSMUSG00000077761.1 ENSMUSG00000077761 ENSMUST00000104573 Gm25214 snoRNA Interval_142574 chr6 143446554 143446774 + 0 NA Intergenic Intergenic 18733 ENSMUSG00000077241.1 ENSMUSG00000077241 ENSMUST00000104053 Gm23272 snoRNA Interval_13602 chr10 20148203 20149996 + 0 NA intron (ENSMUSG00000019996.17, intron 1 of 6) protein_coding-intron (ENSMUSG00000019996.17, intron 1 of 17) -21889 ENSMUSG00000019996.17 ENSMUSG00000019996 ENSMUST00000216308 Map7 protein_coding Interval_102271 chr3 20171740 20171987 + 0 NA Intergenic Intergenic -16794 ENSMUSG00000019528.18 ENSMUSG00000019528 ENSMUST00000135475 Gyg protein_coding Interval_152013 chr7 128267202 128267588 + 0 NA promoter-TSS (ENSMUSG00000030781.13) protein_coding-promoter-TSS (ENSMUSG00000030781.13) 1712 ENSMUSG00000030781.13 ENSMUSG00000030781 ENSMUST00000206703 Slc5a2 protein_coding Interval_144583 chr7 26435049 26436035 + 0 NA promoter-TSS (ENSMUSG00000040601.13) protein_coding-promoter-TSS (ENSMUSG00000040601.13) -104 ENSMUSG00000040601.13 ENSMUSG00000040601 ENSMUST00000146907 Nlrp4a protein_coding Interval_23835 chr11 26889675 26889937 + 0 NA Intergenic Intergenic -32896 ENSMUSG00000080987.1 ENSMUSG00000080987 ENSMUST00000117382 Gm12073 processed_pseudogene Interval_115607 chr4 101354785 101357701 + 0 NA promoter-TSS (ENSMUSG00000086782.2) lincRNA-promoter-TSS (ENSMUSG00000086782.2) 492 ENSMUSG00000086782.2 ENSMUSG00000086782 ENSMUST00000189920 E130102H24Rik lincRNA Interval_136702 chr6 58142314 58142484 + 0 NA Intergenic Intergenic 6514 ENSMUSG00000093708.1 ENSMUSG00000093708 ENSMUST00000176058 Gm20718 processed_pseudogene Interval_156011 chr8 42085691 42086022 + 0 NA Intergenic Intergenic -2747 ENSMUSG00000095057.1 ENSMUSG00000095057 ENSMUST00000107130 Zfp353-ps processed_pseudogene Interval_76263 chr17 78585355 78585731 + 0 NA intron (ENSMUSG00000024076.10, intron 5 of 12) protein_coding-intron (ENSMUSG00000024076.10, intron 6 of 13) 11615 ENSMUSG00000024076.10 ENSMUSG00000024076 ENSMUST00000232864 Vit protein_coding Interval_122344 chr5 21560412 21562519 + 0 NA intron (ENSMUSG00000039883.5, intron 2 of 3) protein_coding-intron (ENSMUSG00000039883.5, intron 2 of 3) 17906 ENSMUSG00000039883.5 ENSMUSG00000039883 ENSMUST00000035651 Lrrc17 protein_coding Interval_90969 chr2 33814908 33815136 + 0 NA intron (ENSMUSG00000038740.9, intron 6 of 7) protein_coding-intron (ENSMUSG00000038740.9, intron 6 of 9) 2065 ENSMUSG00000089596.1 ENSMUSG00000089596 ENSMUST00000158971 Nron misc_RNA Interval_108086 chr3 121438084 121438684 + 0 NA intron (ENSMUSG00000053931.11, intron 1 of 2) protein_coding-intron (ENSMUSG00000053931.11, intron 1 of 6) 10338 ENSMUSG00000106022.1 ENSMUSG00000106022 ENSMUST00000198374 Gm42929 TEC Interval_168132 chr9 77427246 77427470 + 0 NA Intergenic Intergenic -27940 ENSMUSG00000099170.1 ENSMUSG00000099170 ENSMUST00000183878 5730403I07Rik lincRNA Interval_120443 chr4 148651111 148651636 + 0 NA intron (ENSMUSG00000070577.5, intron 2 of 10) protein_coding-intron (ENSMUSG00000070577.5, intron 2 of 10) 8056 ENSMUSG00000070577.5 ENSMUSG00000070577 ENSMUST00000105698 Gm572 protein_coding Interval_163956 chr9 29657757 29659110 + 0 NA intron (ENSMUSG00000059974.10, intron 1 of 2) protein_coding-intron (ENSMUSG00000059974.10, intron 1 of 7) -65923 ENSMUSG00000085638.1 ENSMUSG00000085638 ENSMUST00000141752 Gm15521 sense_intronic Interval_71460 chr17 23905071 23905291 + 0 NA intron (ENSMUSG00000117488.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000117400.1, intron 1 of 1) 6447 ENSMUSG00000096278.8 ENSMUSG00000096278 ENSMUST00000234110 Dcpp2 protein_coding Interval_43380 chr13 29917057 29917310 + 0 NA intron (ENSMUSG00000016477.18, intron 3 of 6) protein_coding-intron (ENSMUSG00000016477.18, intron 3 of 6) -23100 ENSMUSG00000086893.1 ENSMUSG00000086893 ENSMUST00000144277 Gm11365 antisense Interval_8020 chr1 135239735 135240319 + 0 NA Intergenic Intergenic 8032 ENSMUSG00000079139.4 ENSMUSG00000079139 ENSMUST00000110798 Gm4204 processed_pseudogene Interval_72584 chr17 30835377 30835599 + 0 NA intron (ENSMUSG00000033826.10, intron 85 of 90) protein_coding-intron (ENSMUSG00000033826.10, intron 87 of 92) 21948 ENSMUSG00000117760.1 ENSMUSG00000117760 ENSMUST00000237260 Gm41561 antisense Interval_94014 chr2 80703679 80703924 + 0 NA Intergenic Intergenic -3788 ENSMUSG00000077404.1 ENSMUSG00000077404 ENSMUST00000104216 Gm25420 snoRNA Interval_161520 chr8 120900506 120900703 + 0 NA intron (ENSMUSG00000092329.1, intron 1 of 15) protein_coding-intron (ENSMUSG00000092329.1, intron 1 of 15) 20398 ENSMUSG00000097087.1 ENSMUSG00000097087 ENSMUST00000181778 Gm26878 lincRNA Interval_7860 chr1 134210254 134210853 + 0 NA intron (ENSMUSG00000042429.8, intron 2 of 2) protein_coding-intron (ENSMUSG00000042429.8, intron 1 of 1) 17096 ENSMUSG00000042451.12 ENSMUSG00000042451 ENSMUST00000191577 Mybph protein_coding Interval_73598 chr17 40926147 40926417 + 0 NA exon (ENSMUSG00000023919.8, exon 2 of 2) protein_coding-exon (ENSMUSG00000023919.8, exon 2 of 2) 8269 ENSMUSG00000023919.8 ENSMUSG00000023919 ENSMUST00000130890 Cenpq protein_coding Interval_32616 chr11 109192771 109193622 + 0 NA Intergenic Intergenic -33002 ENSMUSG00000081524.3 ENSMUSG00000081524 ENSMUST00000120913 Gm11658 processed_pseudogene Interval_98126 chr2 148532028 148532383 + 0 NA Intergenic Intergenic 63315 ENSMUSG00000087678.1 ENSMUSG00000087678 ENSMUST00000129067 Gm14120 lincRNA Interval_152201 chr7 130605245 130605711 + 0 NA intron (ENSMUSG00000030852.18, intron 2 of 20) protein_coding-intron (ENSMUSG00000030852.18, intron 2 of 20) 48914 ENSMUSG00000109225.1 ENSMUSG00000109225 ENSMUST00000207466 4930513N20Rik TEC Interval_74904 chr17 57204176 57204409 + 0 NA exon (ENSMUSG00000024164.15, exon 40 of 41) protein_coding-exon (ENSMUSG00000024164.15, exon 40 of 41) -10115 ENSMUSG00000005824.7 ENSMUSG00000005824 ENSMUST00000005976 Tnfsf14 protein_coding Interval_124976 chr5 62915136 62915430 + 0 NA Intergenic Intergenic 103609 ENSMUSG00000090326.2 ENSMUSG00000090326 ENSMUST00000170704 Dthd1 protein_coding Interval_9505 chr1 158204625 158204875 + 0 NA Intergenic Intergenic 151479 ENSMUSG00000004031.13 ENSMUSG00000004031 ENSMUST00000192709 Brinp2 protein_coding Interval_146222 chr7 44824667 44825324 + 0 NA intron (ENSMUSG00000109511.1, intron 1 of 1) protein_coding-intron (ENSMUSG00000109511.1, intron 1 of 1) -8421 ENSMUSG00000038539.15 ENSMUSG00000038539 ENSMUST00000209072 Atf5 protein_coding Interval_19128 chr10 94889821 94890268 + 0 NA intron (ENSMUSG00000074785.5, intron 3 of 4) protein_coding-intron (ENSMUSG00000074785.5, intron 4 of 30) -6252 ENSMUSG00000112736.1 ENSMUSG00000112736 ENSMUST00000220244 Gm48718 TEC Interval_84404 chr19 10664535 10664736 + 0 NA TTS (ENSMUSG00000043789.8) protein_coding-TTS (ENSMUSG00000043789.8) 6338 ENSMUSG00000024738.6 ENSMUSG00000024738 ENSMUST00000225016 Pga5 protein_coding Interval_30186 chr11 90333575 90333973 + 0 NA Intergenic Intergenic 54199 ENSMUSG00000003949.16 ENSMUSG00000003949 ENSMUST00000145786 Hlf protein_coding Interval_55839 chr14 101347052 101347436 + 0 NA Intergenic Intergenic 3700 ENSMUSG00000115538.1 ENSMUSG00000115538 ENSMUST00000227762 Hspd1-ps5 processed_pseudogene Interval_20871 chr10 121634237 121634820 + 0 NA Intergenic Intergenic -7060 ENSMUSG00000047642.15 ENSMUSG00000047642 ENSMUST00000132744 D930020B18Rik protein_coding Interval_148344 chr7 80628582 80629603 + 0 NA intron (ENSMUSG00000030527.15, intron 1 of 2) protein_coding-intron (ENSMUSG00000030527.15, intron 3 of 14) 615 ENSMUSG00000030527.15 ENSMUSG00000030527 ENSMUST00000152668 Crtc3 protein_coding Interval_125656 chr5 73080091 73081977 + 0 NA exon (ENSMUSG00000070733.13, exon 33 of 60) protein_coding-exon (ENSMUSG00000070733.13, exon 33 of 60) -35880 ENSMUSG00000107171.1 ENSMUSG00000107171 ENSMUST00000202292 Gm42572 TEC Interval_160363 chr8 108754284 108756359 + 0 NA intron (ENSMUSG00000038872.10, intron 1 of 9) protein_coding-intron (ENSMUSG00000038872.10, intron 1 of 9) 17728 ENSMUSG00000104292.1 ENSMUSG00000104292 ENSMUST00000191614 Gm38042 TEC Interval_79791 chr18 35126922 35127150 + 0 NA intron (ENSMUSG00000037815.7, intron 1 of 3) protein_coding-intron (ENSMUSG00000037815.7, intron 1 of 17) -39413 ENSMUSG00000117727.1 ENSMUSG00000117727 ENSMUST00000238134 Gm3587 lincRNA Interval_103502 chr3 45319135 45319508 + 0 NA intron (ENSMUSG00000097040.6, intron 4 of 6) processed_transcript-intron (ENSMUSG00000097040.6, intron 6 of 8) 13089 ENSMUSG00000103430.1 ENSMUSG00000103430 ENSMUST00000194466 Gm36996 processed_pseudogene Interval_157412 chr8 70195408 70196183 + 0 NA intron (ENSMUSG00000002346.16, intron 1 of 5) protein_coding-intron (ENSMUSG00000002346.16, intron 1 of 8) 16510 ENSMUSG00000002346.16 ENSMUSG00000002346 ENSMUST00000134596 Slc25a42 protein_coding Interval_134583 chr6 29751551 29752623 + 0 NA TTS (ENSMUSG00000081564.1) processed_pseudogene-TTS (ENSMUSG00000081564.1) 1326 ENSMUSG00000081564.1 ENSMUSG00000081564 ENSMUST00000119868 Gm13717 processed_pseudogene Interval_75183 chr17 64466394 64467528 + 0 NA Intergenic Intergenic 26155 ENSMUSG00000098984.1 ENSMUSG00000098984 ENSMUST00000185032 Mir6420 miRNA Interval_125964 chr5 76287926 76289639 + 0 NA intron (ENSMUSG00000029238.11, intron 2 of 17) protein_coding-intron (ENSMUSG00000029238.11, intron 2 of 22) 12993 ENSMUSG00000106815.1 ENSMUSG00000106815 ENSMUST00000202348 Gm43658 TEC Interval_163745 chr9 25185376 25185629 + 0 NA Intergenic Intergenic 33388 ENSMUSG00000100002.2 ENSMUSG00000100002 ENSMUST00000186170 Gm29642 lincRNA Interval_133058 chr5 149568410 149568720 + 0 NA intron (ENSMUSG00000029658.17, intron 7 of 22) protein_coding-intron (ENSMUSG00000029658.17, intron 7 of 22) -30535 ENSMUSG00000107132.1 ENSMUSG00000107132 ENSMUST00000202188 Gm15997 antisense Interval_12624 chr10 3963784 3964541 + 0 NA TTS (ENSMUSG00000040624.18) protein_coding-TTS (ENSMUSG00000040624.18) -17071 ENSMUSG00000082605.1 ENSMUSG00000082605 ENSMUST00000119653 Gm16148 processed_pseudogene Interval_75865 chr17 72196029 72196624 + 0 NA intron (ENSMUSG00000055471.7, intron 4 of 4) protein_coding-intron (ENSMUSG00000055471.7, intron 4 of 28) -59932 ENSMUSG00000117046.1 ENSMUSG00000117046 ENSMUST00000233853 Gm19183 processed_pseudogene Interval_62432 chr15 92597148 92597717 + 0 NA exon (ENSMUSG00000036218.16, exon 1 of 8) protein_coding-exon (ENSMUSG00000036218.16, exon 1 of 8) 108523 ENSMUSG00000115858.1 ENSMUSG00000115858 ENSMUST00000230757 4930588J15Rik antisense Interval_162645 chr9 7236161 7236729 + 0 NA Intergenic Intergenic 1934 ENSMUSG00000111615.1 ENSMUSG00000111615 ENSMUST00000215932 Gm47741 processed_pseudogene Interval_92043 chr2 52857476 52859307 + 0 NA intron (ENSMUSG00000036053.17, intron 1 of 26) protein_coding-intron (ENSMUSG00000036053.17, intron 1 of 26) 531 ENSMUSG00000036053.17 ENSMUSG00000036053 ENSMUST00000050719 Fmnl2 protein_coding Interval_26084 chr11 54058477 54058925 + 0 NA TTS (ENSMUSG00000020388.12) protein_coding-TTS (ENSMUSG00000020388.12) 5867 ENSMUSG00000020388.12 ENSMUSG00000020388 ENSMUST00000151948 Pdlim4 protein_coding Interval_71034 chr17 17314137 17314454 + 0 NA intron (ENSMUSG00000072761.10, intron 1 of 3) lincRNA-intron (ENSMUSG00000072761.10, intron 1 of 3) 19852 ENSMUSG00000072761.10 ENSMUSG00000072761 ENSMUST00000105311 Gm6712 lincRNA Interval_157762 chr8 72837620 72837954 + 0 NA intron (ENSMUSG00000004383.18, intron 12 of 15) protein_coding-intron (ENSMUSG00000004383.18, intron 11 of 14) -42300 ENSMUSG00000110563.1 ENSMUSG00000110563 ENSMUST00000212908 Gm45791 processed_pseudogene Interval_127020 chr5 99647969 99649141 + 0 NA intron (ENSMUSG00000089809.9, intron 1 of 16) protein_coding-intron (ENSMUSG00000089809.9, intron 1 of 1) -7146 ENSMUSG00000087791.1 ENSMUSG00000087791 ENSMUST00000157166 Gm25969 snoRNA Interval_10992 chr1 177806940 177807204 + 0 NA Intergenic Intergenic -1359 ENSMUSG00000102483.2 ENSMUSG00000102483 ENSMUST00000194528 Catspere1 protein_coding Interval_153560 chr8 3416559 3418462 + 0 NA intron (ENSMUSG00000004568.13, intron 1 of 3) protein_coding-intron (ENSMUSG00000004568.13, intron 1 of 19) -40529 ENSMUSG00000108955.1 ENSMUSG00000108955 ENSMUST00000207266 Gm44775 TEC Interval_111984 chr4 32982219 32985587 + 0 NA intron (ENSMUSG00000028278.14, intron 1 of 5) protein_coding-intron (ENSMUSG00000028278.14, intron 1 of 7) 18418 ENSMUSG00000081025.1 ENSMUSG00000081025 ENSMUST00000119473 Gm11943 processed_pseudogene Interval_137503 chr6 72782213 72782414 + 0 NA intron (ENSMUSG00000055799.13, intron 2 of 5) protein_coding-intron (ENSMUSG00000055799.13, intron 3 of 11) -30399 ENSMUSG00000104501.1 ENSMUSG00000104501 ENSMUST00000193564 Gm37736 TEC Interval_143603 chr7 13063536 13063860 + 0 NA Intergenic Intergenic -11318 ENSMUSG00000030380.17 ENSMUSG00000030380 ENSMUST00000183176 Mzf1 protein_coding Interval_165557 chr9 49483032 49483747 + 0 NA intron (ENSMUSG00000040219.4, intron 2 of 8) protein_coding-intron (ENSMUSG00000040219.4, intron 2 of 21) 2826 ENSMUSG00000040219.4 ENSMUSG00000040219 ENSMUST00000146666 Ttc12 protein_coding Interval_18158 chr10 83073165 83073741 + 0 NA intron (ENSMUSG00000034612.7, intron 1 of 2) protein_coding-intron (ENSMUSG00000034612.7, intron 1 of 2) -41758 ENSMUSG00000112084.1 ENSMUSG00000112084 ENSMUST00000218071 Gm10773 TEC Interval_61452 chr15 81712498 81713083 + 0 NA TTS (ENSMUSG00000022391.16) protein_coding-TTS (ENSMUSG00000022391.16) -17255 ENSMUSG00000063765.12 ENSMUSG00000063765 ENSMUST00000230849 Chadl protein_coding Interval_82418 chr18 73863029 73864094 + 0 NA promoter-TSS (ENSMUSG00000064036.15) protein_coding-promoter-TSS (ENSMUSG00000064036.15) 4174 ENSMUSG00000064036.15 ENSMUSG00000064036 ENSMUST00000134847 Mro protein_coding Interval_30177 chr11 90177740 90177962 + 0 NA Intergenic Intergenic 7276 ENSMUSG00000077706.1 ENSMUSG00000077706 ENSMUST00000104518 n-R5s72 rRNA Interval_83358 chr18 84540662 84541693 + 0 NA intron (ENSMUSG00000048410.17, intron 2 of 2) protein_coding-intron (ENSMUSG00000048410.17, intron 2 of 2) -84568 ENSMUSG00000117676.1 ENSMUSG00000117676 ENSMUST00000236074 Gm50314 antisense Interval_151028 chr7 117926623 117926824 + 0 NA Intergenic Intergenic 149929 ENSMUSG00000088116.1 ENSMUSG00000088116 ENSMUST00000157491 Gm24063 miRNA Interval_42546 chr13 15095953 15096498 + 0 NA Intergenic Intergenic 22406 ENSMUSG00000113240.1 ENSMUSG00000113240 ENSMUST00000221976 Gm48338 processed_pseudogene Interval_158631 chr8 84863454 84864745 + 0 NA exon (ENSMUSG00000003808.18, exon 5 of 13) protein_coding-exon (ENSMUSG00000003808.18, exon 5 of 13) -3848 ENSMUSG00000098331.1 ENSMUSG00000098331 ENSMUST00000184765 Mir7069 miRNA Interval_53320 chr14 56130509 56130814 + 0 NA exon (ENSMUSG00000059256.6, exon 3 of 5) protein_coding-exon (ENSMUSG00000059256.6, exon 3 of 5) 1947 ENSMUSG00000059256.6 ENSMUSG00000059256 ENSMUST00000082093 Gzmd protein_coding Interval_151937 chr7 127660793 127662294 + 0 NA TTS (ENSMUSG00000030814.17) protein_coding-TTS (ENSMUSG00000030814.17) -3309 ENSMUSG00000108766.1 ENSMUSG00000108766 ENSMUST00000206375 Gm44760 TEC Interval_44793 chr13 48672484 48673066 + 0 NA Intergenic Intergenic 9777 ENSMUSG00000021381.4 ENSMUSG00000021381 ENSMUST00000021813 Barx1 protein_coding Interval_146558 chr7 46816535 46817878 + 0 NA intron (ENSMUSG00000006599.13, intron 11 of 12) protein_coding-intron (ENSMUSG00000006599.13, intron 13 of 14) 4211 ENSMUSG00000087298.3 ENSMUSG00000087298 ENSMUST00000119337 Gm9392 processed_pseudogene Interval_106819 chr3 101091926 101092916 + 0 NA intron (ENSMUSG00000027864.9, intron 1 of 8) protein_coding-intron (ENSMUSG00000027864.9, intron 1 of 8) -5028 ENSMUSG00000105717.1 ENSMUSG00000105717 ENSMUST00000200367 Gm43465 sense_intronic Interval_65633 chr16 24433762 24434892 + 0 NA intron (ENSMUSG00000033306.15, intron 1 of 7) protein_coding-intron (ENSMUSG00000033306.15, intron 1 of 12) -27910 ENSMUSG00000087861.1 ENSMUSG00000087861 ENSMUST00000157236 Gm24440 snRNA Interval_76071 chr17 74704505 74705043 + 0 NA Intergenic Intergenic -65292 ENSMUSG00000024078.7 ENSMUSG00000024078 ENSMUST00000234264 Ttc27 protein_coding Interval_26119 chr11 54515248 54515556 + 0 NA intron (ENSMUSG00000035992.15, intron 17 of 17) protein_coding-intron (ENSMUSG00000035992.15, intron 17 of 17) 50842 ENSMUSG00000035992.15 ENSMUSG00000035992 ENSMUST00000143650 Fnip1 protein_coding Interval_170265 chr9 106547415 106547823 + 0 NA intron (ENSMUSG00000118396.2, intron 6 of 7) protein_coding-intron (ENSMUSG00000118396.2, intron 6 of 7) -2933 ENSMUSG00000118396.2 ENSMUSG00000118396 ENSMUST00000062917 Iqcf2 protein_coding Interval_135720 chr6 45026058 45026583 + 0 NA Intergenic Intergenic -33037 ENSMUSG00000039419.17 ENSMUSG00000039419 ENSMUST00000060839 Cntnap2 protein_coding Interval_130978 chr5 134370374 134372154 + 0 NA intron (ENSMUSG00000023079.14, intron 7 of 13) protein_coding-intron (ENSMUSG00000023079.14, intron 22 of 30) 5760 ENSMUSG00000023079.14 ENSMUSG00000023079 ENSMUST00000201647 Gtf2ird1 protein_coding Interval_27864 chr11 70491090 70492063 + 0 NA Intergenic Intergenic -18394 ENSMUSG00000018919.10 ENSMUSG00000018919 ENSMUST00000141924 Tm4sf5 protein_coding Interval_93186 chr2 70956650 70956976 + 0 NA Intergenic Intergenic 25371 ENSMUSG00000041975.17 ENSMUSG00000041975 ENSMUST00000124273 Mettl8 protein_coding Interval_166257 chr9 57829696 57831919 + 0 NA intron (ENSMUSG00000091908.7, intron 2 of 3) protein_coding-intron (ENSMUSG00000004661.15, intron 1 of 7) -34586 ENSMUSG00000004661.15 ENSMUSG00000004661 ENSMUST00000167670 Arid3b protein_coding Interval_55198 chr14 79277139 79278315 + 0 NA Intergenic Intergenic 17274 ENSMUSG00000115045.1 ENSMUSG00000115045 ENSMUST00000226573 Gm49028 processed_pseudogene Interval_82583 chr18 75293188 75293980 + 0 NA intron (ENSMUSG00000102047.1, intron 1 of 1) transcribed_processed_pseudogene-intron (ENSMUSG00000102047.1, intron 1 of 1) 3733 ENSMUSG00000102047.1 ENSMUSG00000102047 ENSMUST00000186356 2010010A06Rik transcribed_processed_pseudogene Interval_4864 chr1 80403080 80404165 + 0 NA Intergenic Intergenic -18437 ENSMUSG00000090637.2 ENSMUSG00000090637 ENSMUST00000164487 Gm6189 processed_pseudogene Interval_174456 chrX 152701414 152702055 + 0 NA intron (ENSMUSG00000045180.13, intron 1 of 9) protein_coding-intron (ENSMUSG00000045180.13, intron 1 of 9) -28494 ENSMUSG00000045180.13 ENSMUSG00000045180 ENSMUST00000141677 Shroom2 protein_coding Interval_29479 chr11 84264605 84264838 + 0 NA intron (ENSMUSG00000020532.18, intron 24 of 55) protein_coding-intron (ENSMUSG00000020532.18, intron 22 of 53) 75128 ENSMUSG00000103122.1 ENSMUSG00000103122 ENSMUST00000194891 Gm37391 TEC Interval_23735 chr11 25620211 25620620 + 0 NA promoter-TSS (ENSMUSG00000032985.15) protein_coding-promoter-TSS (ENSMUSG00000032985.15) -64725 ENSMUSG00000064761.1 ENSMUSG00000064761 ENSMUST00000082827 Gm23514 snoRNA Interval_19509 chr10 100904223 100905160 + 0 NA Intergenic Intergenic -163056 ENSMUSG00000112104.1 ENSMUSG00000112104 ENSMUST00000218270 Gm35722 lincRNA Interval_57823 chr15 22066765 22067296 + 0 NA Intergenic Intergenic 108598 ENSMUSG00000115708.1 ENSMUSG00000115708 ENSMUST00000227154 Gm49187 TEC Interval_68585 chr16 79661171 79662098 + 0 NA Intergenic Intergenic 10107 ENSMUSG00000102791.1 ENSMUSG00000102791 ENSMUST00000195074 Gm37709 TEC Interval_167158 chr9 65690091 65690422 + 0 NA TTS (ENSMUSG00000040652.16) protein_coding-TTS (ENSMUSG00000040652.16) 20544 ENSMUSG00000040652.16 ENSMUSG00000040652 ENSMUST00000128664 Oaz2 protein_coding Interval_150013 chr7 104720558 104721735 + 0 NA Intergenic Intergenic 13216 ENSMUSG00000051885.6 ENSMUSG00000051885 ENSMUST00000211596 Olfr664 polymorphic_pseudogene Interval_25696 chr11 50841081 50841675 + 0 NA exon (ENSMUSG00000044296.10, exon 1 of 5) protein_coding-exon (ENSMUSG00000044296.10, exon 1 of 5) 174 ENSMUSG00000044296.10 ENSMUSG00000044296 ENSMUST00000109133 Zfp879 protein_coding Interval_53981 chr14 64048931 64049113 + 0 NA Intergenic Intergenic 19149 ENSMUSG00000046049.7 ENSMUSG00000046049 ENSMUST00000224314 Rp1l1 protein_coding Interval_105232 chr3 84032843 84034019 + 0 NA intron (ENSMUSG00000033767.14, intron 2 of 2) protein_coding-intron (ENSMUSG00000033767.14, intron 2 of 33) 30021 ENSMUSG00000103261.1 ENSMUSG00000103261 ENSMUST00000192340 Gm36981 TEC Interval_150526 chr7 112022827 112024259 + 0 NA promoter-TSS (ENSMUSG00000059263.9) protein_coding-promoter-TSS (ENSMUSG00000059263.9) 37 ENSMUSG00000059263.9 ENSMUSG00000059263 ENSMUST00000210526 Usp47 protein_coding Interval_140919 chr6 122751448 122752335 + 0 NA intron (ENSMUSG00000003153.10, intron 2 of 4) protein_coding-intron (ENSMUSG00000003153.10, intron 2 of 4) 28066 ENSMUSG00000003153.10 ENSMUSG00000003153 ENSMUST00000168801 Slc2a3 protein_coding Interval_147622 chr7 70286904 70288616 + 0 NA intron (ENSMUSG00000109097.1, intron 1 of 3) lincRNA-intron (ENSMUSG00000109097.1, intron 1 of 3) -37984 ENSMUSG00000099387.1 ENSMUSG00000099387 ENSMUST00000188229 Gm29327 lincRNA Interval_153318 chr7 143587018 143588763 + 0 NA intron (ENSMUSG00000010755.17, intron 2 of 4) protein_coding-intron (ENSMUSG00000010755.17, intron 3 of 22) -8549 ENSMUSG00000082561.1 ENSMUSG00000082561 ENSMUST00000121587 Gm15580 processed_pseudogene Interval_150152 chr7 107416083 107416321 + 0 NA intron (ENSMUSG00000062542.11, intron 1 of 1) protein_coding-intron (ENSMUSG00000062542.11, intron 1 of 6) 50130 ENSMUSG00000109078.1 ENSMUSG00000109078 ENSMUST00000208516 Gm19033 processed_pseudogene Interval_90697 chr2 31996033 31996861 + 0 NA exon (ENSMUSG00000001855.15, exon 13 of 36) protein_coding-exon (ENSMUSG00000001855.15, exon 13 of 36) 1626 ENSMUSG00000001855.15 ENSMUSG00000001855 ENSMUST00000124455 Nup214 protein_coding Interval_49531 chr13 112763148 112764923 + 0 NA promoter-TSS (ENSMUSG00000114286.1) lincRNA-promoter-TSS (ENSMUSG00000114286.1) -813 ENSMUSG00000114286.1 ENSMUSG00000114286 ENSMUST00000225832 Gm47850 lincRNA Interval_166939 chr9 64021959 64023342 + 0 NA promoter-TSS (ENSMUSG00000036867.7) protein_coding-promoter-TSS (ENSMUSG00000036867.7) -618 ENSMUSG00000036867.7 ENSMUSG00000036867 ENSMUST00000179458 Smad6 protein_coding Interval_9589 chr1 159885448 159885772 + 0 NA intron (ENSMUSG00000015829.13, intron 10 of 22) protein_coding-intron (ENSMUSG00000015829.13, intron 9 of 21) 46116 ENSMUSG00000103719.1 ENSMUSG00000103719 ENSMUST00000195328 Gm38039 antisense Interval_29122 chr11 80460813 80461064 + 0 NA TTS (ENSMUSG00000017428.16) protein_coding-TTS (ENSMUSG00000017428.16) -16118 ENSMUSG00000048895.13 ENSMUSG00000048895 ENSMUST00000147694 Cdk5r1 protein_coding Interval_164074 chr9 31313511 31313794 + 0 NA promoter-TSS (ENSMUSG00000042496.18) protein_coding-promoter-TSS (ENSMUSG00000042496.18) 99 ENSMUSG00000042496.18 ENSMUSG00000042496 ENSMUST00000074510 Prdm10 protein_coding Interval_114244 chr4 69854258 69855698 + 0 NA TTS (ENSMUSG00000085627.2) processed_pseudogene-TTS (ENSMUSG00000085627.2) 1031 ENSMUSG00000085627.2 ENSMUSG00000085627 ENSMUST00000119005 Gm11222 processed_pseudogene Interval_38515 chr12 79782007 79782777 + 0 NA intron (ENSMUSG00000059060.15, intron 9 of 10) protein_coding-intron (ENSMUSG00000059060.15, intron 9 of 10) 143102 ENSMUSG00000112765.1 ENSMUSG00000112765 ENSMUST00000219857 9430078K24Rik lincRNA Interval_71648 chr17 25127136 25127559 + 0 NA Intergenic Intergenic -6044 ENSMUSG00000036636.10 ENSMUSG00000036636 ENSMUST00000159426 Clcn7 protein_coding Interval_114875 chr4 86634001 86634916 + 0 NA Intergenic Intergenic -3207 ENSMUSG00000081169.1 ENSMUSG00000081169 ENSMUST00000122073 Gm12551 unprocessed_pseudogene Interval_173431 chrX 93457590 93458221 + 0 NA intron (ENSMUSG00000006678.6, intron 34 of 36) protein_coding-intron (ENSMUSG00000006678.6, intron 34 of 36) 33041 ENSMUSG00000006678.6 ENSMUSG00000006678 ENSMUST00000124236 Pola1 protein_coding Interval_94547 chr2 92096603 92098361 + 0 NA intron (ENSMUSG00000058318.15, intron 1 of 16) protein_coding-intron (ENSMUSG00000058318.15, intron 1 of 15) -1440 ENSMUSG00000087197.1 ENSMUSG00000087197 ENSMUST00000150482 Gm13780 lincRNA Interval_151752 chr7 126427247 126429812 + 0 NA promoter-TSS (ENSMUSG00000030727.12) protein_coding-promoter-TSS (ENSMUSG00000030727.12) -230 ENSMUSG00000030727.12 ENSMUSG00000030727 ENSMUST00000133300 Rabep2 protein_coding Interval_38743 chr12 81788494 81789288 + 0 NA Intergenic Intergenic 7533 ENSMUSG00000113303.1 ENSMUSG00000113303 ENSMUST00000221909 4930423D22Rik bidirectional_promoter_lncRNA Interval_9011 chr1 153071235 153072144 + 0 NA intron (ENSMUSG00000099969.1, intron 1 of 1) protein_coding-intron (ENSMUSG00000042751.14, intron 1 of 10) 17818 ENSMUSG00000099969.1 ENSMUSG00000099969 ENSMUST00000190117 Gm28960 antisense Interval_147314 chr7 65769836 65770834 + 0 NA Intergenic Intergenic -14524 ENSMUSG00000068480.6 ENSMUSG00000068480 ENSMUST00000089593 Gm7551 processed_pseudogene Interval_67519 chr16 50176980 50177796 + 0 NA Intergenic Intergenic 66315 ENSMUSG00000098028.1 ENSMUSG00000098028 ENSMUST00000182962 Gm8824 processed_pseudogene Interval_141245 chr6 126472737 126473267 + 0 NA Intergenic Intergenic 62410 ENSMUSG00000045534.4 ENSMUSG00000045534 ENSMUST00000060972 Kcna5 protein_coding Interval_84111 chr19 7264241 7265902 + 0 NA Intergenic Intergenic -2254 ENSMUSG00000024968.14 ENSMUSG00000024968 ENSMUST00000134167 Rcor2 protein_coding Interval_4414 chr1 74020046 74020297 + 0 NA intron (ENSMUSG00000055322.16, intron 3 of 32) protein_coding-intron (ENSMUSG00000055322.16, intron 3 of 34) 78505 ENSMUSG00000055322.16 ENSMUSG00000055322 ENSMUST00000190599 Tns1 protein_coding Interval_107595 chr3 108783892 108784080 + 0 NA Intergenic Intergenic 31460 ENSMUSG00000049565.16 ENSMUSG00000049565 ENSMUST00000147916 Aknad1 protein_coding Interval_154853 chr8 24394605 24395172 + 0 NA Intergenic Intergenic -17291 ENSMUSG00000109141.1 ENSMUSG00000109141 ENSMUST00000208709 Gm30692 lincRNA Interval_18191 chr10 83543469 83544388 + 0 NA promoter-TSS (ENSMUSG00000034560.6) protein_coding-promoter-TSS (ENSMUSG00000034560.6) -41865 ENSMUSG00000034560.6 ENSMUSG00000034560 ENSMUST00000219582 Washc4 protein_coding Interval_168871 chr9 88259658 88260671 + 0 NA intron (ENSMUSG00000100782.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000100782.1, intron 1 of 2) 269 ENSMUSG00000100782.1 ENSMUSG00000100782 ENSMUST00000190118 Gm28231 lincRNA Interval_174721 chrX 164057676 164058045 + 0 NA Intergenic Intergenic 18633 ENSMUSG00000040749.11 ENSMUSG00000040749 ENSMUST00000134272 Siah1b protein_coding Interval_110742 chr4 7891293 7891989 + 0 NA Intergenic Intergenic 70725 ENSMUSG00000094771.1 ENSMUSG00000094771 ENSMUST00000179446 Gm23860 snoRNA Interval_24222 chr11 31628343 31629187 + 0 NA Intergenic Intergenic 42962 ENSMUSG00000044502.16 ENSMUSG00000044502 ENSMUST00000109415 Bod1 protein_coding Interval_45292 chr13 54079575 54080933 + 0 NA intron (ENSMUSG00000021474.9, intron 1 of 10) protein_coding-intron (ENSMUSG00000021474.9, intron 1 of 10) -5692 ENSMUSG00000021474.9 ENSMUSG00000021474 ENSMUST00000222285 Sfxn1 protein_coding Interval_85107 chr19 22910478 22910924 + 0 NA intron (ENSMUSG00000052387.16, intron 18 of 24) protein_coding-intron (ENSMUSG00000052387.16, intron 19 of 26) -150753 ENSMUSG00000118155.1 ENSMUSG00000118155 ENSMUST00000235686 Gm50136 lincRNA Interval_85827 chr19 32194006 32195313 + 0 NA intron (ENSMUSG00000040451.18, intron 3 of 10) protein_coding-intron (ENSMUSG00000040451.18, intron 5 of 9) 14614 ENSMUSG00000118064.1 ENSMUSG00000118064 ENSMUST00000235377 Gm50210 sense_intronic Interval_14715 chr10 39280666 39280935 + 0 NA Intergenic Intergenic 35754 ENSMUSG00000111008.1 ENSMUSG00000111008 ENSMUST00000213973 Gm31562 lincRNA Interval_169165 chr9 94751073 94751838 + 0 NA promoter-TSS (ENSMUSG00000098251.1) miRNA-promoter-TSS (ENSMUSG00000098251.1) -374 ENSMUSG00000098251.1 ENSMUSG00000098251 ENSMUST00000183864 Mir7656 miRNA Interval_123134 chr5 30022823 30023408 + 0 NA Intergenic Intergenic 9794 ENSMUSG00000025746.11 ENSMUSG00000025746 ENSMUST00000199765 Il6 protein_coding Interval_81375 chr18 59790101 59792633 + 0 NA Intergenic Intergenic -16896 ENSMUSG00000118327.1 ENSMUSG00000118327 ENSMUST00000235423 Gm8697 processed_pseudogene Interval_54458 chr14 69899890 69900299 + 0 NA intron (ENSMUSG00000022085.4, intron 3 of 6) protein_coding-intron (ENSMUSG00000022085.4, intron 3 of 6) 59674 ENSMUSG00000022085.4 ENSMUSG00000022085 ENSMUST00000022678 Pebp4 protein_coding Interval_63352 chr15 100509950 100510220 + 0 NA intron (ENSMUSG00000009733.9, intron 13 of 13) protein_coding-intron (ENSMUSG00000009733.9, intron 14 of 15) 2159 ENSMUSG00000009733.9 ENSMUSG00000009733 ENSMUST00000231138 Tfcp2 protein_coding Interval_128308 chr5 112466953 112467744 + 0 NA intron (ENSMUSG00000058153.15, intron 5 of 14) protein_coding-intron (ENSMUSG00000058153.15, intron 5 of 16) 17922 ENSMUSG00000072722.2 ENSMUSG00000072722 ENSMUST00000100882 Gm6588 protein_coding Interval_167671 chr9 71763052 71764988 + 0 NA intron (ENSMUSG00000032232.14, intron 1 of 17) protein_coding-intron (ENSMUSG00000032232.14, intron 1 of 18) 63517 ENSMUSG00000099220.1 ENSMUSG00000099220 ENSMUST00000183453 Gm27220 processed_pseudogene Interval_33256 chr11 115502430 115503817 + 0 NA TTS (ENSMUSG00000020737.12) protein_coding-TTS (ENSMUSG00000020737.12) 10099 ENSMUSG00000081376.1 ENSMUSG00000081376 ENSMUST00000118637 Gm11694 processed_pseudogene Interval_70423 chr17 10067895 10068105 + 0 NA Intergenic Intergenic 120163 ENSMUSG00000117206.1 ENSMUSG00000117206 ENSMUST00000233132 Gm49809 processed_pseudogene Interval_63741 chr15 103182256 103184344 + 0 NA Intergenic Intergenic -19982 ENSMUSG00000036061.10 ENSMUSG00000036061 ENSMUST00000230529 Smug1 protein_coding Interval_14753 chr10 39594692 39595186 + 0 NA TTS (ENSMUSG00000086915.7) antisense-TTS (ENSMUSG00000086915.7) 18743 ENSMUSG00000086915.7 ENSMUSG00000086915 ENSMUST00000143877 Gm16364 antisense Interval_9917 chr1 164099580 164099771 + 0 NA Intergenic Intergenic -15589 ENSMUSG00000026580.16 ENSMUSG00000026580 ENSMUST00000162102 Selp protein_coding Interval_40524 chr12 105496652 105498689 + 0 NA Intergenic Intergenic -15810 ENSMUSG00000113535.1 ENSMUSG00000113535 ENSMUST00000223443 AU015791 lincRNA Interval_66938 chr16 38631863 38632317 + 0 NA intron (ENSMUSG00000022799.4, intron 3 of 5) protein_coding-intron (ENSMUSG00000022799.4, intron 3 of 11) 53779 ENSMUSG00000081651.1 ENSMUSG00000081651 ENSMUST00000122206 Gm15530 processed_pseudogene Interval_27185 chr11 63920314 63922706 + 0 NA exon (ENSMUSG00000070407.5, exon 1 of 2) protein_coding-exon (ENSMUSG00000070407.5, exon 1 of 2) 780 ENSMUSG00000070407.5 ENSMUSG00000070407 ENSMUST00000094103 Hs3st3b1 protein_coding Interval_144373 chr7 24744516 24745409 + 0 NA TTS (ENSMUSG00000052212.6) protein_coding-TTS (ENSMUSG00000052212.6) 5859 ENSMUSG00000052212.6 ENSMUSG00000052212 ENSMUST00000206160 Cd177 protein_coding Interval_85131 chr19 23083057 23083474 + 0 NA Intergenic Intergenic -7341 ENSMUSG00000097930.2 ENSMUSG00000097930 ENSMUST00000181623 C330002G04Rik lincRNA Interval_81848 chr18 65271788 65273306 + 0 NA intron (ENSMUSG00000032845.16, intron 6 of 6) protein_coding-intron (ENSMUSG00000032845.16, intron 12 of 12) 23686 ENSMUSG00000065402.1 ENSMUSG00000065402 ENSMUST00000083468 Mir122 miRNA Interval_29130 chr11 80496160 80496891 + 0 NA intron (ENSMUSG00000035441.14, intron 21 of 21) protein_coding-intron (ENSMUSG00000035441.14, intron 21 of 21) 12581 ENSMUSG00000085078.1 ENSMUSG00000085078 ENSMUST00000133400 C030013C21Rik sense_intronic Interval_134655 chr6 30171344 30171673 + 0 NA Intergenic Intergenic -1385 ENSMUSG00000103108.2 ENSMUSG00000103108 ENSMUST00000194541 Rncr4 lincRNA Interval_71547 chr17 24488133 24489685 + 0 NA promoter-TSS (ENSMUSG00000033597.9) protein_coding-promoter-TSS (ENSMUSG00000033597.9) 5694 ENSMUSG00000117487.1 ENSMUSG00000117487 ENSMUST00000234404 Gm50062 lincRNA Interval_128734 chr5 114991488 114992104 + 0 NA intron (ENSMUSG00000086054.2, intron 2 of 2) antisense-intron (ENSMUSG00000086054.2, intron 1 of 1) 16340 ENSMUSG00000106838.1 ENSMUSG00000106838 ENSMUST00000202592 1810017P11Rik TEC Interval_54531 chr14 70507617 70508954 + 0 NA intron (ENSMUSG00000022098.10, intron 2 of 17) protein_coding-intron (ENSMUSG00000022098.10, intron 4 of 19) 13891 ENSMUSG00000022097.4 ENSMUSG00000022097 ENSMUST00000022692 Sftpc protein_coding Interval_124476 chr5 48615473 48615788 + 0 NA intron (ENSMUSG00000029088.16, intron 1 of 8) protein_coding-intron (ENSMUSG00000029088.16, intron 1 of 8) 11523 ENSMUSG00000105574.1 ENSMUSG00000105574 ENSMUST00000197775 Gm43648 TEC Interval_64692 chr16 14223774 14224013 + 0 NA intron (ENSMUSG00000018830.10, intron 18 of 41) protein_coding-intron (ENSMUSG00000018830.10, intron 17 of 40) 48766 ENSMUSG00000022678.16 ENSMUSG00000022678 ENSMUST00000149232 Nde1 protein_coding Interval_146646 chr7 49071113 49071576 + 0 NA intron (ENSMUSG00000052512.17, intron 2 of 39) protein_coding-intron (ENSMUSG00000052512.17, intron 2 of 39) -8763 ENSMUSG00000109068.1 ENSMUSG00000109068 ENSMUST00000207469 Gm45207 processed_pseudogene Interval_31038 chr11 97827891 97828230 + 0 NA intron (ENSMUSG00000038366.15, intron 4 of 4) protein_coding-intron (ENSMUSG00000038366.15, intron 4 of 6) 12812 ENSMUSG00000038366.15 ENSMUSG00000038366 ENSMUST00000107568 Lasp1 protein_coding Interval_172776 chrX 48593711 48594795 + 0 NA intron (ENSMUSG00000036916.13, intron 1 of 4) protein_coding-intron (ENSMUSG00000036916.13, intron 1 of 19) 251 ENSMUSG00000036916.13 ENSMUSG00000036916 ENSMUST00000150501 Zfp280c protein_coding Interval_140928 chr6 122793833 122794280 + 0 NA promoter-TSS (ENSMUSG00000107066.2) processed_pseudogene-promoter-TSS (ENSMUSG00000107066.2) -731 ENSMUSG00000107066.2 ENSMUSG00000107066 ENSMUST00000200876 Gm4482 processed_pseudogene Interval_44939 chr13 50372585 50373730 + 0 NA intron (ENSMUSG00000101136.1, intron 1 of 1) antisense-intron (ENSMUSG00000101136.1, intron 1 of 1) -57964 ENSMUSG00000037816.10 ENSMUSG00000037816 ENSMUST00000176543 Fbxw17 protein_coding Interval_57420 chr15 10675527 10676089 + 0 NA intron (ENSMUSG00000022246.14, intron 2 of 16) protein_coding-intron (ENSMUSG00000022246.14, intron 2 of 17) 38290 ENSMUSG00000022246.14 ENSMUSG00000022246 ENSMUST00000227366 Rai14 protein_coding Interval_40140 chr12 101922466 101923023 + 0 NA TTS (ENSMUSG00000021189.11) protein_coding-TTS (ENSMUSG00000021189.11) 9504 ENSMUSG00000093579.1 ENSMUSG00000093579 ENSMUST00000177547 Gm20036 processed_transcript Interval_161335 chr8 119809818 119810897 + 0 NA intron (ENSMUSG00000031827.13, intron 1 of 1) protein_coding-intron (ENSMUSG00000031827.13, intron 3 of 3) 12360 ENSMUSG00000031827.13 ENSMUSG00000031827 ENSMUST00000212676 Cotl1 protein_coding Interval_117563 chr4 124684969 124685201 + 0 NA intron (ENSMUSG00000028907.7, intron 2 of 5) protein_coding-intron (ENSMUSG00000028907.7, intron 2 of 7) 8449 ENSMUSG00000028907.7 ENSMUSG00000028907 ENSMUST00000153088 Utp11 protein_coding Interval_47478 chr13 85146229 85147126 + 0 NA Intergenic Intergenic 5957 ENSMUSG00000114954.1 ENSMUSG00000114954 ENSMUST00000224780 Gm47746 processed_pseudogene Interval_170726 chr9 110358039 110358792 + 0 NA intron (ENSMUSG00000032485.14, intron 2 of 4) protein_coding-intron (ENSMUSG00000032485.14, intron 2 of 22) -3202 ENSMUSG00000032485.14 ENSMUSG00000032485 ENSMUST00000196424 Scap protein_coding Interval_165869 chr9 53974380 53975560 + 0 NA promoter-TSS (ENSMUSG00000041986.16) protein_coding-promoter-TSS (ENSMUSG00000041986.16) -47944 ENSMUSG00000041986.16 ENSMUSG00000041986 ENSMUST00000213111 Elmod1 protein_coding Interval_140588 chr6 119894938 119895409 + 0 NA TTS (ENSMUSG00000097831.1) lincRNA-TTS (ENSMUSG00000097831.1) 2253 ENSMUSG00000080719.1 ENSMUSG00000080719 ENSMUST00000121192 Gm15532 processed_pseudogene Interval_81257 chr18 56783038 56784166 + 0 NA intron (ENSMUSG00000032656.14, intron 3 of 4) protein_coding-intron (ENSMUSG00000032656.14, intron 2 of 3) 13885 ENSMUSG00000087597.1 ENSMUSG00000087597 ENSMUST00000128240 Gm15345 antisense Interval_110579 chr4 4148517 4149145 + 0 NA intron (ENSMUSG00000085996.1, intron 1 of 1) processed_transcript-intron (ENSMUSG00000085996.1, intron 1 of 1) -10012 ENSMUSG00000045573.9 ENSMUSG00000045573 ENSMUST00000133567 Penk protein_coding Interval_14187 chr10 28517257 28518012 + 0 NA intron (ENSMUSG00000019889.10, intron 13 of 14) protein_coding-intron (ENSMUSG00000019889.10, intron 13 of 31) -69359 ENSMUSG00000019889.10 ENSMUSG00000019889 ENSMUST00000220404 Ptprk protein_coding Interval_155690 chr8 36174942 36175137 + 0 NA TTS (ENSMUSG00000110321.1) lincRNA-TTS (ENSMUSG00000110321.1) 1008 ENSMUSG00000110321.1 ENSMUSG00000110321 ENSMUST00000211519 Gm39164 lincRNA Interval_104613 chr3 68819869 68820589 + 0 NA Intergenic Intergenic -25850 ENSMUSG00000102853.1 ENSMUSG00000102853 ENSMUST00000195818 Gm7270 processed_pseudogene Interval_2586 chr1 40879043 40879766 + 0 NA Intergenic Intergenic -15172 ENSMUSG00000094136.2 ENSMUSG00000094136 ENSMUST00000178542 Gm5973 processed_pseudogene Interval_46041 chr13 60513700 60513917 + 0 NA Intergenic Intergenic 15601 ENSMUSG00000080666.1 ENSMUSG00000080666 ENSMUST00000117016 Gm25000 miRNA Interval_90598 chr2 31372212 31372431 + 0 NA intron (ENSMUSG00000055632.18, intron 22 of 97) protein_coding-intron (ENSMUSG00000055632.18, intron 22 of 97) 57906 ENSMUSG00000055632.18 ENSMUSG00000055632 ENSMUST00000141294 Hmcn2 protein_coding Interval_90313 chr2 29729206 29730536 + 0 NA promoter-TSS (ENSMUSG00000039844.20) protein_coding-promoter-TSS (ENSMUSG00000039844.20) 8794 ENSMUSG00000048316.3 ENSMUSG00000048316 ENSMUST00000051212 Gm9823 pseudogene Interval_145324 chr7 33564054 33564486 + 0 NA Intergenic Intergenic 3444 ENSMUSG00000083568.3 ENSMUSG00000083568 ENSMUST00000121734 Gm12770 processed_pseudogene Interval_83107 chr18 81397345 81398769 + 0 NA Intergenic Intergenic 59842 ENSMUSG00000118227.1 ENSMUSG00000118227 ENSMUST00000236435 Gm30288 lincRNA Interval_4299 chr1 72535214 72537417 + 0 NA exon (ENSMUSG00000039372.5, exon 1 of 4) protein_coding-exon (ENSMUSG00000039372.5, exon 1 of 4) 615 ENSMUSG00000039372.5 ENSMUSG00000039372 ENSMUST00000047786 Marchf4 protein_coding Interval_33684 chr11 117911624 117913147 + 0 NA Intergenic Intergenic -9520 ENSMUSG00000082562.1 ENSMUSG00000082562 ENSMUST00000121028 Gm11726 processed_pseudogene Interval_117572 chr4 124741372 124742197 + 0 NA promoter-TSS (ENSMUSG00000028894.18) protein_coding-promoter-TSS (ENSMUSG00000028894.18) -88 ENSMUSG00000028894.18 ENSMUSG00000028894 ENSMUST00000142446 Inpp5b protein_coding Interval_53820 chr14 62292380 62293376 + 0 NA promoter-TSS (ENSMUSG00000048281.9) protein_coding-promoter-TSS (ENSMUSG00000048281.9) 169 ENSMUSG00000048281.9 ENSMUSG00000048281 ENSMUST00000225120 Dleu7 protein_coding Interval_147971 chr7 75972951 75973951 + 0 NA Intergenic Intergenic -27373 ENSMUSG00000108495.1 ENSMUSG00000108495 ENSMUST00000206543 Gm45139 TEC Interval_140591 chr6 119916393 119916589 + 0 NA intron (ENSMUSG00000030166.14, intron 7 of 11) protein_coding-intron (ENSMUSG00000030166.14, intron 7 of 11) -1591 ENSMUSG00000030166.14 ENSMUSG00000030166 ENSMUST00000204319 Rad52 protein_coding Interval_138678 chr6 91106893 91107223 + 0 NA intron (ENSMUSG00000030091.17, intron 1 of 39) protein_coding-intron (ENSMUSG00000030091.17, intron 1 of 39) -8436 ENSMUSG00000030091.17 ENSMUSG00000030091 ENSMUST00000203434 Nup210 protein_coding Interval_154614 chr8 22068759 22069372 + 0 NA promoter-TSS (ENSMUSG00000063362.13) protein_coding-promoter-TSS (ENSMUSG00000063362.13) 49 ENSMUSG00000063362.13 ENSMUSG00000063362 ENSMUST00000134474 Alg11 protein_coding Interval_148205 chr7 79810405 79811658 + 0 NA exon (ENSMUSG00000030543.10, exon 1 of 2) protein_coding-exon (ENSMUSG00000030543.10, exon 1 of 2) 304 ENSMUSG00000030543.10 ENSMUSG00000030543 ENSMUST00000107394 Mesp2 protein_coding Interval_104185 chr3 59992266 59992586 + 0 NA Intergenic Intergenic -14317 ENSMUSG00000091376.1 ENSMUSG00000091376 ENSMUST00000169794 Aadacl2 protein_coding Interval_101520 chr3 3666387 3668433 + 0 NA Intergenic Intergenic 33260 ENSMUSG00000017688.14 ENSMUSG00000017688 ENSMUST00000108394 Hnf4g protein_coding Interval_127431 chr5 103877004 103877305 + 0 NA intron (ENSMUSG00000029312.12, intron 2 of 9) protein_coding-intron (ENSMUSG00000029312.12, intron 2 of 9) -2785 ENSMUSG00000029312.12 ENSMUSG00000029312 ENSMUST00000147184 Klhl8 protein_coding Interval_151353 chr7 121539314 121540089 + 0 NA intron (ENSMUSG00000108811.1, intron 2 of 5) antisense-intron (ENSMUSG00000108811.1, intron 2 of 5) 50135 ENSMUSG00000108811.1 ENSMUSG00000108811 ENSMUST00000206244 4933432K03Rik antisense Interval_103423 chr3 41475507 41475742 + 0 NA Intergenic Intergenic 6261 ENSMUSG00000105260.1 ENSMUSG00000105260 ENSMUST00000196123 Gm40040 lincRNA Interval_61267 chr15 80358982 80359218 + 0 NA intron (ENSMUSG00000022416.15, intron 9 of 36) protein_coding-intron (ENSMUSG00000022416.15, intron 9 of 36) -30228 ENSMUSG00000022416.15 ENSMUSG00000022416 ENSMUST00000160175 Cacna1i protein_coding Interval_16576 chr10 64127834 64128045 + 0 NA intron (ENSMUSG00000060843.11, intron 7 of 17) protein_coding-intron (ENSMUSG00000060843.11, intron 6 of 16) -37692 ENSMUSG00000042846.8 ENSMUSG00000042846 ENSMUST00000133588 Lrrtm3 protein_coding Interval_64318 chr16 10455484 10455959 + 0 NA Intergenic Intergenic -8394 ENSMUSG00000050908.12 ENSMUSG00000050908 ENSMUST00000141587 Tvp23a protein_coding Interval_7705 chr1 133170384 133170594 + 0 NA intron (ENSMUSG00000041757.17, intron 2 of 9) protein_coding-intron (ENSMUSG00000041757.17, intron 2 of 9) -38707 ENSMUSG00000102425.1 ENSMUSG00000102425 ENSMUST00000193049 Gm26616 TEC Interval_24589 chr11 34872182 34873112 + 0 NA Intergenic Intergenic -7692 ENSMUSG00000085090.1 ENSMUSG00000085090 ENSMUST00000131249 Gm12711 lincRNA Interval_51086 chr14 22306402 22306639 + 0 NA intron (ENSMUSG00000063458.13, intron 2 of 3) protein_coding-intron (ENSMUSG00000063458.13, intron 2 of 6) 236303 ENSMUSG00000114412.1 ENSMUSG00000114412 ENSMUST00000225587 4930405A10Rik antisense Interval_75336 chr17 65933698 65934278 + 0 NA intron (ENSMUSG00000024098.6, intron 2 of 2) protein_coding-intron (ENSMUSG00000024098.6, intron 3 of 4) 17149 ENSMUSG00000024098.6 ENSMUSG00000024098 ENSMUST00000233855 Twsg1 protein_coding Interval_40156 chr12 102058461 102058687 + 0 NA Intergenic Intergenic -70845 ENSMUSG00000041771.14 ENSMUSG00000041771 ENSMUST00000235018 Slc24a4 protein_coding Interval_129478 chr5 120458991 120459879 + 0 NA intron (ENSMUSG00000029596.13, intron 7 of 7) protein_coding-intron (ENSMUSG00000029596.13, intron 8 of 8) 7925 ENSMUSG00000029596.13 ENSMUSG00000029596 ENSMUST00000132916 Sdsl protein_coding Interval_87535 chr19 53309866 53311181 + 0 NA promoter-TSS (ENSMUSG00000025025.14) protein_coding-promoter-TSS (ENSMUSG00000025025.14) 15220 ENSMUSG00000118369.1 ENSMUSG00000118369 ENSMUST00000237210 Gm30541 processed_transcript Interval_16235 chr10 61602426 61603078 + 0 NA intron (ENSMUSG00000020090.7, intron 1 of 3) protein_coding-intron (ENSMUSG00000020090.7, intron 1 of 3) 7260 ENSMUSG00000020090.7 ENSMUSG00000020090 ENSMUST00000020287 Npffr1 protein_coding Interval_58093 chr15 27823327 27824262 + 0 NA promoter-TSS (ENSMUSG00000022263.10) protein_coding-promoter-TSS (ENSMUSG00000022263.10) -32513 ENSMUSG00000115641.1 ENSMUSG00000115641 ENSMUST00000228765 Gm9891 TEC Interval_76237 chr17 78313219 78314049 + 0 NA TTS (ENSMUSG00000024074.8) protein_coding-TTS (ENSMUSG00000024074.8) 10973 ENSMUSG00000092979.1 ENSMUSG00000092979 ENSMUST00000175238 Gm25069 miRNA Interval_170365 chr9 107463316 107464082 + 0 NA intron (ENSMUSG00000010066.15, intron 2 of 37) protein_coding-intron (ENSMUSG00000010066.15, intron 2 of 37) -18668 ENSMUSG00000091425.1 ENSMUSG00000091425 ENSMUST00000164032 Gm17118 antisense Interval_153387 chr7 144263993 144264185 + 0 NA intron (ENSMUSG00000037541.22, intron 2 of 12) protein_coding-intron (ENSMUSG00000037541.22, intron 5 of 15) 25364 ENSMUSG00000037541.22 ENSMUSG00000037541 ENSMUST00000136979 Shank2 protein_coding Interval_110663 chr4 5804791 5805788 + 0 NA intron (ENSMUSG00000049119.14, intron 2 of 4) protein_coding-intron (ENSMUSG00000049119.14, intron 2 of 4) 32410 ENSMUSG00000049119.14 ENSMUSG00000049119 ENSMUST00000145365 Fam110b protein_coding Interval_173309 chrX 77777651 77778052 + 0 NA intron (ENSMUSG00000035725.13, intron 3 of 3) protein_coding-intron (ENSMUSG00000035725.13, intron 3 of 8) 18121 ENSMUSG00000035725.13 ENSMUSG00000035725 ENSMUST00000114044 Prkx protein_coding Interval_94703 chr2 93536965 93538273 + 0 NA Intergenic Intergenic 69180 ENSMUSG00000075025.10 ENSMUSG00000075025 ENSMUST00000167654 Gm10804 lincRNA Interval_63328 chr15 100345274 100347638 + 0 NA Intergenic Intergenic -6710 ENSMUSG00000093789.3 ENSMUSG00000093789 ENSMUST00000175929 Methig1 protein_coding Interval_128255 chr5 112082970 112083506 + 0 NA Intergenic Intergenic -72999 ENSMUSG00000104538.1 ENSMUSG00000104538 ENSMUST00000197688 1700016B01Rik lincRNA Interval_16655 chr10 66852932 66853818 + 0 NA Intergenic Intergenic 15778 ENSMUSG00000112379.1 ENSMUSG00000112379 ENSMUST00000218961 Gm47900 lincRNA Interval_158105 chr8 78761313 78762695 + 0 NA intron (ENSMUSG00000112190.1, intron 3 of 7) unitary_pseudogene-intron (ENSMUSG00000112190.1, intron 3 of 7) 12541 ENSMUSG00000112190.1 ENSMUSG00000112190 ENSMUST00000218647 Gm47209 unitary_pseudogene Interval_83480 chr18 86560145 86560610 + 0 NA Intergenic Intergenic -41594 ENSMUSG00000117736.1 ENSMUSG00000117736 ENSMUST00000236204 Gm50386 lincRNA Interval_84915 chr19 18731249 18731524 + 0 NA TTS (ENSMUSG00000117878.1) lincRNA-TTS (ENSMUSG00000117878.1) -1355 ENSMUSG00000064941.1 ENSMUSG00000064941 ENSMUST00000083007 Gm23238 snRNA Interval_23753 chr11 25871420 25871888 + 0 NA intron (ENSMUSG00000032985.15, intron 2 of 2) protein_coding-intron (ENSMUSG00000032985.15, intron 2 of 6) -102513 ENSMUSG00000032985.15 ENSMUSG00000032985 ENSMUST00000125987 5730522E02Rik protein_coding Interval_88686 chr2 9744571 9744915 + 0 NA Intergenic Intergenic -113402 ENSMUSG00000104276.1 ENSMUSG00000104276 ENSMUST00000191950 Gm37866 TEC Interval_94728 chr2 93813247 93813884 + 0 NA TTS (ENSMUSG00000027198.16) protein_coding-TTS (ENSMUSG00000027198.16) 8984 ENSMUSG00000027198.16 ENSMUSG00000027198 ENSMUST00000125027 Ext2 protein_coding Interval_74579 chr17 53519352 53519759 + 0 NA intron (ENSMUSG00000044957.3, intron 1 of 2) protein_coding-intron (ENSMUSG00000044957.3, intron 1 of 2) -18609 ENSMUSG00000117128.1 ENSMUSG00000117128 ENSMUST00000232747 Gm49915 antisense Interval_58746 chr15 37738626 37739346 + 0 NA intron (ENSMUSG00000051359.15, intron 1 of 2) protein_coding-intron (ENSMUSG00000051359.15, intron 1 of 6) -4651 ENSMUSG00000115157.1 ENSMUSG00000115157 ENSMUST00000145909 Gm49397 processed_transcript Interval_131075 chr5 134944910 134947306 + 0 NA exon (ENSMUSG00000047501.3, exon 1 of 1) protein_coding-exon (ENSMUSG00000047501.3, exon 1 of 1) 826 ENSMUSG00000047501.3 ENSMUSG00000047501 ENSMUST00000051401 Cldn4 protein_coding Interval_152178 chr7 130434665 130437911 + 0 NA intron (ENSMUSG00000030850.17, intron 11 of 12) protein_coding-intron (ENSMUSG00000030850.17, intron 10 of 11) 21385 ENSMUSG00000108940.1 ENSMUSG00000108940 ENSMUST00000207954 Gm45719 TEC Interval_54734 chr14 74140997 74141613 + 0 NA intron (ENSMUSG00000115704.1, intron 3 of 4) lincRNA-intron (ENSMUSG00000115704.1, intron 3 of 4) -156240 ENSMUSG00000115411.1 ENSMUSG00000115411 ENSMUST00000228329 Gm6986 processed_pseudogene Interval_91153 chr2 35493244 35494033 + 0 NA Intergenic Intergenic -2119 ENSMUSG00000081421.1 ENSMUSG00000081421 ENSMUST00000121664 Gm13445 processed_pseudogene Interval_10507 chr1 171384512 171385044 + 0 NA exon (ENSMUSG00000006411.12, exon 5 of 9) protein_coding-exon (ENSMUSG00000006411.12, exon 5 of 9) -4221 ENSMUSG00000048865.16 ENSMUSG00000048865 ENSMUST00000194914 Arhgap30 protein_coding Interval_20476 chr10 117824215 117825394 + 0 NA intron (ENSMUSG00000052681.8, intron 1 of 7) protein_coding-intron (ENSMUSG00000052681.8, intron 1 of 7) -6264 ENSMUSG00000052681.8 ENSMUSG00000052681 ENSMUST00000220214 Rap1b protein_coding Interval_67333 chr16 46496180 46497841 + 0 NA promoter-TSS (ENSMUSG00000022656.15) protein_coding-promoter-TSS (ENSMUSG00000022656.15) -238 ENSMUSG00000022656.15 ENSMUSG00000022656 ENSMUST00000133935 Nectin3 protein_coding Interval_55409 chr14 86812956 86813251 + 0 NA intron (ENSMUSG00000022021.14, intron 24 of 26) protein_coding-intron (ENSMUSG00000022021.14, intron 24 of 27) -105918 ENSMUSG00000115306.1 ENSMUSG00000115306 ENSMUST00000226731 Gm49159 TEC Interval_116597 chr4 115962246 115963578 + 0 NA Intergenic Intergenic -22986 ENSMUSG00000028707.15 ENSMUSG00000028707 ENSMUST00000084338 Dmbx1 protein_coding Interval_69233 chr16 91575225 91575435 + 0 NA TTS (ENSMUSG00000022964.14) protein_coding-TTS (ENSMUSG00000022964.14) 14007 ENSMUSG00000022965.8 ENSMUSG00000022965 ENSMUST00000130404 Ifngr2 protein_coding Interval_6040 chr1 94385159 94385409 + 0 NA Intergenic Intergenic 84603 ENSMUSG00000100347.1 ENSMUSG00000100347 ENSMUST00000187459 Gm7895 processed_pseudogene Interval_23196 chr11 20468394 20468608 + 0 NA Intergenic Intergenic 22089 ENSMUSG00000083878.3 ENSMUSG00000083878 ENSMUST00000119032 Gm12034 processed_pseudogene Interval_167973 chr9 75104176 75104413 + 0 NA intron (ENSMUSG00000034593.16, intron 1 of 40) protein_coding-intron (ENSMUSG00000034593.16, intron 1 of 40) -5154 ENSMUSG00000090001.1 ENSMUSG00000090001 ENSMUST00000162765 Gm9719 processed_pseudogene Interval_113216 chr4 50293476 50293735 + 0 NA Intergenic Intergenic 6859 ENSMUSG00000095394.1 ENSMUSG00000095394 ENSMUST00000104120 Gm25485 snoRNA Interval_135262 chr6 37913339 37913609 + 0 NA intron (ENSMUSG00000029833.17, intron 3 of 7) protein_coding-intron (ENSMUSG00000029833.17, intron 3 of 18) 42663 ENSMUSG00000029833.17 ENSMUSG00000029833 ENSMUST00000135387 Trim24 protein_coding Interval_106934 chr3 102042401 102042628 + 0 NA Intergenic Intergenic -25536 ENSMUSG00000104930.1 ENSMUSG00000104930 ENSMUST00000199964 Gm43243 processed_pseudogene Interval_64967 chr16 17582989 17584201 + 0 NA promoter-TSS (ENSMUSG00000022756.17) protein_coding-promoter-TSS (ENSMUSG00000022756.17) -6924 ENSMUSG00000022756.17 ENSMUSG00000022756 ENSMUST00000232186 Slc7a4 protein_coding Interval_118950 chr4 134658924 134660930 + 0 NA intron (ENSMUSG00000037306.13, intron 1 of 8) protein_coding-intron (ENSMUSG00000037306.13, intron 2 of 12) 43840 ENSMUSG00000037306.13 ENSMUSG00000037306 ENSMUST00000176606 Man1c1 protein_coding Interval_118476 chr4 131908077 131908307 + 0 NA intron (ENSMUSG00000085667.1, intron 3 of 4) processed_transcript-intron (ENSMUSG00000085667.1, intron 3 of 4) -4881 ENSMUSG00000083013.1 ENSMUSG00000083013 ENSMUST00000121250 Gm12978 transcribed_processed_pseudogene Interval_51337 chr14 26516033 26516367 + 0 NA intron (ENSMUSG00000021870.17, intron 1 of 22) protein_coding-intron (ENSMUSG00000021870.17, intron 1 of 22) 1646 ENSMUSG00000078128.1 ENSMUSG00000078128 ENSMUST00000104927 Gm2178 processed_pseudogene Interval_29963 chr11 88404088 88405413 + 0 NA intron (ENSMUSG00000069769.13, intron 3 of 5) protein_coding-intron (ENSMUSG00000069769.13, intron 8 of 13) 28764 ENSMUSG00000084411.2 ENSMUSG00000084411 ENSMUST00000120278 Gm11510 processed_pseudogene Interval_91199 chr2 35868612 35868836 + 0 NA intron (ENSMUSG00000026885.13, intron 6 of 9) protein_coding-intron (ENSMUSG00000026885.13, intron 6 of 9) 24529 ENSMUSG00000106994.1 ENSMUSG00000106994 ENSMUST00000202084 Gm10829 TEC Interval_45799 chr13 58165107 58165973 + 0 NA TTS (ENSMUSG00000050002.14) protein_coding-TTS (ENSMUSG00000050002.14) 7891 ENSMUSG00000050002.14 ENSMUSG00000050002 ENSMUST00000225236 Idnk protein_coding Interval_162731 chr9 8116054 8116529 + 0 NA intron (ENSMUSG00000040729.8, intron 3 of 11) protein_coding-intron (ENSMUSG00000040729.8, intron 3 of 10) 18003 ENSMUSG00000040729.8 ENSMUSG00000040729 ENSMUST00000214150 Cep126 protein_coding Interval_71653 chr17 25166058 25167294 + 0 NA intron (ENSMUSG00000059562.14, intron 7 of 17) protein_coding-intron (ENSMUSG00000059562.14, intron 6 of 16) 4215 ENSMUSG00000059562.14 ENSMUSG00000059562 ENSMUST00000182292 Ccdc154 protein_coding Interval_56183 chr14 111260623 111262233 + 0 NA Intergenic Intergenic -20618 ENSMUSG00000093362.1 ENSMUSG00000093362 ENSMUST00000175621 Gm22802 miRNA Interval_39613 chr12 91557275 91558414 + 0 NA TTS (ENSMUSG00000020962.14) protein_coding-TTS (ENSMUSG00000020962.14) 15728 ENSMUSG00000080365.1 ENSMUSG00000080365 ENSMUST00000116715 Gm25776 snoRNA Interval_12272 chr1 191307947 191308282 + 0 NA intron (ENSMUSG00000037499.9, intron 3 of 3) protein_coding-intron (ENSMUSG00000037499.9, intron 3 of 3) 10080 ENSMUSG00000037499.9 ENSMUSG00000037499 ENSMUST00000046770 Nenf protein_coding Interval_91795 chr2 49690372 49690580 + 0 NA intron (ENSMUSG00000026764.15, intron 4 of 25) protein_coding-intron (ENSMUSG00000026764.15, intron 4 of 25) 9977 ENSMUSG00000082879.1 ENSMUSG00000082879 ENSMUST00000120607 Gm13525 processed_pseudogene Interval_151973 chr7 127898511 127899324 + 0 NA TTS (ENSMUSG00000108479.1) TEC-TTS (ENSMUSG00000108479.1) 1349 ENSMUSG00000108479.1 ENSMUSG00000108479 ENSMUST00000206633 2200002A13Rik TEC Interval_131231 chr5 135923976 135924416 + 0 NA intron (ENSMUSG00000051391.9, intron 1 of 2) protein_coding-intron (ENSMUSG00000051391.9, intron 1 of 1) 10358 ENSMUSG00000051391.9 ENSMUSG00000051391 ENSMUST00000126192 Ywhag protein_coding Interval_37489 chr12 69321499 69323984 + 0 NA exon (ENSMUSG00000020982.9, exon 12 of 12) protein_coding-exon (ENSMUSG00000020982.9, exon 12 of 12) 20340 ENSMUSG00000020978.10 ENSMUSG00000020978 ENSMUST00000154667 Klhdc2 protein_coding Interval_170993 chr9 113568037 113568430 + 0 NA intron (ENSMUSG00000109890.2, intron 1 of 4) lincRNA-intron (ENSMUSG00000109890.2, intron 1 of 4) 38004 ENSMUSG00000111388.1 ENSMUSG00000111388 ENSMUST00000213870 Gm7183 processed_pseudogene Interval_154797 chr8 23427219 23428282 + 0 NA intron (ENSMUSG00000031548.7, intron 2 of 2) protein_coding-intron (ENSMUSG00000031548.7, intron 2 of 2) 16248 ENSMUSG00000031548.7 ENSMUSG00000031548 ENSMUST00000033952 Sfrp1 protein_coding Interval_50835 chr14 20135905 20136312 + 0 NA intron (ENSMUSG00000045107.5, intron 1 of 1) protein_coding-intron (ENSMUSG00000045107.5, intron 1 of 1) 2426 ENSMUSG00000045107.5 ENSMUSG00000045107 ENSMUST00000226090 Saysd1 protein_coding Interval_165493 chr9 48655673 48656665 + 0 NA TTS (ENSMUSG00000066687.5) protein_coding-TTS (ENSMUSG00000066687.5) -58794 ENSMUSG00000032271.13 ENSMUSG00000032271 ENSMUST00000128076 Nnmt protein_coding Interval_29852 chr11 87276277 87276952 + 0 NA intron (ENSMUSG00000046442.4, intron 1 of 3) protein_coding-intron (ENSMUSG00000046442.4, intron 1 of 6) -28059 ENSMUSG00000080976.1 ENSMUSG00000080976 ENSMUST00000118128 Gm11490 processed_pseudogene Interval_129151 chr5 117875012 117876164 + 0 NA intron (ENSMUSG00000029361.18, intron 1 of 27) protein_coding-intron (ENSMUSG00000029361.18, intron 2 of 28) 2775 ENSMUSG00000104071.1 ENSMUSG00000104071 ENSMUST00000194276 Gm37028 TEC Interval_91917 chr2 51436120 51436877 + 0 NA intron (ENSMUSG00000086007.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000086007.1, intron 1 of 1) 1402 ENSMUSG00000086007.1 ENSMUSG00000086007 ENSMUST00000154530 1700057H21Rik lincRNA Interval_17482 chr10 77178249 77179351 + 0 NA Intergenic Intergenic 41700 ENSMUSG00000112612.1 ENSMUSG00000112612 ENSMUST00000218871 Gm7775 processed_pseudogene Interval_71621 chr17 24928717 24930090 + 0 NA intron (ENSMUSG00000024163.17, intron 1 of 30) protein_coding-intron (ENSMUSG00000024163.17, intron 1 of 31) 7574 ENSMUSG00000024163.17 ENSMUSG00000024163 ENSMUST00000148360 Mapk8ip3 protein_coding Interval_118091 chr4 128910289 128910594 + 0 NA exon (ENSMUSG00000041000.8, exon 5 of 5) protein_coding-exon (ENSMUSG00000041000.8, exon 5 of 5) -25564 ENSMUSG00000085961.1 ENSMUSG00000085961 ENSMUST00000154515 Gm15904 antisense Interval_12044 chr1 189062719 189063256 + 0 NA Intergenic Intergenic -1908 ENSMUSG00000103370.1 ENSMUSG00000103370 ENSMUST00000194962 Gm37178 TEC Interval_161057 chr8 117211936 117212134 + 0 NA exon (ENSMUSG00000052557.11, exon 11 of 11) protein_coding-exon (ENSMUSG00000052557.11, exon 11 of 11) 53898 ENSMUSG00000052557.11 ENSMUSG00000052557 ENSMUST00000162997 Gan protein_coding Interval_98233 chr2 150271703 150272634 + 0 NA Intergenic Intergenic 14651 ENSMUSG00000079008.2 ENSMUSG00000079008 ENSMUST00000109922 Gm14124 protein_coding Interval_162028 chr8 124535321 124536259 + 0 NA intron (ENSMUSG00000031979.17, intron 1 of 3) protein_coding-intron (ENSMUSG00000031979.17, intron 8 of 17) 14971 ENSMUSG00000031979.17 ENSMUSG00000031979 ENSMUST00000129977 Cog2 protein_coding Interval_13036 chr10 9796655 9796989 + 0 NA intron (ENSMUSG00000019790.17, intron 18 of 25) protein_coding-intron (ENSMUSG00000019790.17, intron 18 of 27) 22763 ENSMUSG00000019790.17 ENSMUSG00000019790 ENSMUST00000219200 Stxbp5 protein_coding Interval_160169 chr8 106905647 106908510 + 0 NA intron (ENSMUSG00000041438.8, intron 7 of 14) protein_coding-intron (ENSMUSG00000041438.8, intron 8 of 16) 12489 ENSMUSG00000041438.8 ENSMUSG00000041438 ENSMUST00000212718 Utp4 protein_coding Interval_67332 chr16 46487389 46487936 + 0 NA intron (ENSMUSG00000022656.15, intron 1 of 2) protein_coding-intron (ENSMUSG00000022656.15, intron 1 of 5) 9110 ENSMUSG00000022656.15 ENSMUSG00000022656 ENSMUST00000133935 Nectin3 protein_coding Interval_167265 chr9 66877941 66878651 + 0 NA intron (ENSMUSG00000036943.9, intron 1 of 7) protein_coding-intron (ENSMUSG00000036943.9, intron 1 of 7) 41391 ENSMUSG00000036943.9 ENSMUSG00000036943 ENSMUST00000041139 Rab8b protein_coding Interval_121390 chr4 155473440 155474049 + 0 NA Intergenic Intergenic -2039 ENSMUSG00000118647.1 ENSMUSG00000118647 ENSMUST00000239493 AL670227.1 unitary_pseudogene Interval_114415 chr4 75641189 75641625 + 0 NA Intergenic Intergenic -213111 ENSMUSG00000084253.1 ENSMUSG00000084253 ENSMUST00000118109 Gm11256 processed_pseudogene Interval_14127 chr10 27892341 27892685 + 0 NA Intergenic Intergenic 22422 ENSMUSG00000112620.1 ENSMUSG00000112620 ENSMUST00000218873 Gm18972 processed_pseudogene Interval_11625 chr1 183423843 183424683 + 0 NA TTS (ENSMUSG00000053461.9) protein_coding-TTS (ENSMUSG00000053461.9) 3608 ENSMUSG00000104022.1 ENSMUSG00000104022 ENSMUST00000192860 Gm37214 sense_intronic Interval_156887 chr8 61487300 61488326 + 0 NA promoter-TSS (ENSMUSG00000031641.14) protein_coding-promoter-TSS (ENSMUSG00000031641.14) 58 ENSMUSG00000031641.14 ENSMUSG00000031641 ENSMUST00000150932 Cbr4 protein_coding Interval_70184 chr17 6019889 6021776 + 0 NA TTS (ENSMUSG00000023805.17) protein_coding-TTS (ENSMUSG00000023805.17) 12798 ENSMUSG00000023805.17 ENSMUSG00000023805 ENSMUST00000126881 Synj2 protein_coding Interval_134506 chr6 29211806 29212544 + 0 NA promoter-TSS (ENSMUSG00000003500.13) protein_coding-promoter-TSS (ENSMUSG00000003500.13) 4156 ENSMUSG00000003500.13 ENSMUSG00000003500 ENSMUST00000160749 Impdh1 protein_coding Interval_156344 chr8 47568750 47569437 + 0 NA Intergenic Intergenic 11564 ENSMUSG00000110363.1 ENSMUSG00000110363 ENSMUST00000210981 Gm45576 lincRNA Interval_170292 chr9 106730741 106731135 + 0 NA intron (ENSMUSG00000040661.6, intron 2 of 21) protein_coding-intron (ENSMUSG00000040661.6, intron 2 of 21) -45636 ENSMUSG00000040813.16 ENSMUSG00000040813 ENSMUST00000185645 Tex264 protein_coding Interval_112659 chr4 43899361 43899669 + 0 NA intron (ENSMUSG00000028476.13, intron 5 of 21) protein_coding-intron (ENSMUSG00000028476.13, intron 5 of 20) -5563 ENSMUSG00000099252.1 ENSMUSG00000099252 ENSMUST00000183559 Gm27265 misc_RNA Interval_58760 chr15 37867497 37868423 + 0 NA promoter-TSS (ENSMUSG00000097679.1) processed_pseudogene-promoter-TSS (ENSMUSG00000097679.1) -126 ENSMUSG00000097679.1 ENSMUSG00000097679 ENSMUST00000180745 Rps19-ps5 processed_pseudogene Interval_95143 chr2 104241144 104241681 + 0 NA promoter-TSS (ENSMUSG00000068373.15) protein_coding-promoter-TSS (ENSMUSG00000068373.15) -13174 ENSMUSG00000089606.1 ENSMUSG00000089606 ENSMUST00000158981 Gm22501 snoRNA Interval_93650 chr2 75608364 75610848 + 0 NA Intergenic Intergenic 23776 ENSMUSG00000082152.1 ENSMUSG00000082152 ENSMUST00000119695 Gm13655 processed_pseudogene Interval_72649 chr17 31305207 31305640 + 0 NA promoter-TSS (ENSMUSG00000024036.16) protein_coding-promoter-TSS (ENSMUSG00000024036.16) -8734 ENSMUSG00000118295.1 ENSMUSG00000118295 ENSMUST00000236752 Gm8437 transcribed_processed_pseudogene Interval_71343 chr17 22426764 22427528 + 0 NA intron (ENSMUSG00000071266.13, intron 1 of 2) protein_coding-intron (ENSMUSG00000071266.13, intron 1 of 6) -23977 ENSMUSG00000071266.13 ENSMUSG00000071266 ENSMUST00000167740 Zfp946 protein_coding Interval_97111 chr2 131300488 131300818 + 0 NA TTS (ENSMUSG00000086329.1) processed_transcript-TTS (ENSMUSG00000086329.1) 2108 ENSMUSG00000086329.1 ENSMUSG00000086329 ENSMUST00000149576 Gm14233 processed_transcript Interval_45580 chr13 56044041 56044392 + 0 NA intron (ENSMUSG00000114493.2, intron 5 of 5) antisense-intron (ENSMUSG00000114493.2, intron 2 of 2) -13982 ENSMUSG00000114229.1 ENSMUSG00000114229 ENSMUST00000225745 Gm47072 processed_pseudogene Interval_103038 chr3 34663428 34665495 + 0 NA promoter-TSS (ENSMUSG00000105284.1) TEC-promoter-TSS (ENSMUSG00000105284.1) -172 ENSMUSG00000105284.1 ENSMUSG00000105284 ENSMUST00000196779 Gm42693 TEC Interval_150723 chr7 113828685 113828975 + 0 NA intron (ENSMUSG00000038156.16, intron 2 of 5) protein_coding-intron (ENSMUSG00000038156.16, intron 2 of 15) 62656 ENSMUSG00000038156.16 ENSMUSG00000038156 ENSMUST00000084696 Spon1 protein_coding Interval_61287 chr15 80577140 80577941 + 0 NA intron (ENSMUSG00000042351.9, intron 1 of 7) protein_coding-intron (ENSMUSG00000042351.9, intron 1 of 7) -12384 ENSMUSG00000050439.7 ENSMUSG00000050439 ENSMUST00000229110 Enthd1 protein_coding Interval_131225 chr5 135903182 135904368 + 0 NA Intergenic Intergenic -7289 ENSMUSG00000105047.1 ENSMUSG00000105047 ENSMUST00000196247 Gm42533 processed_pseudogene Interval_130839 chr5 131156460 131157111 + 0 NA intron (ENSMUSG00000034040.16, intron 1 of 1) protein_coding-intron (ENSMUSG00000034040.16, intron 1 of 10) -22074 ENSMUSG00000106710.1 ENSMUSG00000106710 ENSMUST00000202871 Gm43166 sense_intronic Interval_77155 chr17 86943348 86943769 + 0 NA TTS (ENSMUSG00000053375.8) protein_coding-TTS (ENSMUSG00000053375.8) 4339 ENSMUSG00000053375.8 ENSMUSG00000053375 ENSMUST00000235110 Atp6v1e2 protein_coding Interval_151163 chr7 118937617 118938146 + 0 NA intron (ENSMUSG00000073856.11, intron 1 of 2) protein_coding-intron (ENSMUSG00000073856.11, intron 7 of 8) 31805 ENSMUSG00000109517.1 ENSMUSG00000109517 ENSMUST00000208287 Gm44763 antisense Interval_128945 chr5 116234782 116235246 + 0 NA intron (ENSMUSG00000043913.14, intron 1 of 5) protein_coding-intron (ENSMUSG00000043913.14, intron 1 of 13) -8692 ENSMUSG00000086122.1 ENSMUSG00000086122 ENSMUST00000156169 Gm14507 antisense Interval_144780 chr7 28202409 28203943 + 0 NA Intergenic Intergenic -23182 ENSMUSG00000108968.1 ENSMUSG00000108968 ENSMUST00000207620 Gm45011 TEC Interval_136532 chr6 55203058 55204091 + 0 NA intron (ENSMUSG00000038022.11, intron 1 of 10) protein_coding-intron (ENSMUSG00000038022.11, intron 1 of 17) 191 ENSMUSG00000038022.11 ENSMUSG00000038022 ENSMUST00000203225 Mindy4 protein_coding Interval_15268 chr10 43953002 43953479 + 0 NA intron (ENSMUSG00000019866.15, intron 21 of 21) protein_coding-intron (ENSMUSG00000019866.15, intron 19 of 19) 5344 ENSMUSG00000019864.14 ENSMUSG00000019864 ENSMUST00000214453 Rtn4ip1 protein_coding Interval_61816 chr15 84360831 84361083 + 0 NA Intergenic Intergenic -14178 ENSMUSG00000116442.1 ENSMUSG00000116442 ENSMUST00000230576 Gm5214 processed_pseudogene Interval_129607 chr5 121282604 121283524 + 0 NA intron (ENSMUSG00000042744.16, intron 11 of 75) protein_coding-intron (ENSMUSG00000042744.16, intron 11 of 75) -3166 ENSMUSG00000042744.16 ENSMUSG00000042744 ENSMUST00000130655 Hectd4 protein_coding Interval_24828 chr11 39987916 39988490 + 0 NA Intergenic Intergenic -19991 ENSMUSG00000085301.1 ENSMUSG00000085301 ENSMUST00000130945 Gm12132 lincRNA Interval_20424 chr10 117467173 117467943 + 0 NA Intergenic Intergenic -20065 ENSMUSG00000112344.1 ENSMUSG00000112344 ENSMUST00000220189 Gm32141 lincRNA Interval_96423 chr2 122375481 122376291 + 0 NA Intergenic Intergenic -6749 ENSMUSG00000033256.14 ENSMUSG00000033256 ENSMUST00000135848 Shf protein_coding Interval_57409 chr15 10631169 10631781 + 0 NA intron (ENSMUSG00000022246.14, intron 3 of 16) protein_coding-intron (ENSMUSG00000022246.14, intron 3 of 17) 31138 ENSMUSG00000115667.1 ENSMUSG00000115667 ENSMUST00000228059 Gm10389 antisense Interval_154798 chr8 23435259 23435897 + 0 NA intron (ENSMUSG00000031548.7, intron 2 of 2) protein_coding-intron (ENSMUSG00000031548.7, intron 2 of 2) 24076 ENSMUSG00000031548.7 ENSMUSG00000031548 ENSMUST00000033952 Sfrp1 protein_coding Interval_168501 chr9 82644094 82644326 + 0 NA Intergenic Intergenic 119219 ENSMUSG00000098420.1 ENSMUSG00000098420 ENSMUST00000185049 Gm27249 processed_pseudogene Interval_7291 chr1 128477810 128478281 + 0 NA Intergenic Intergenic -11995 ENSMUSG00000088196.1 ENSMUSG00000088196 ENSMUST00000157571 Gm23902 snoRNA Interval_91354 chr2 38177566 38177781 + 0 NA intron (ENSMUSG00000035392.17, intron 2 of 5) protein_coding-intron (ENSMUSG00000035392.17, intron 2 of 21) -9854 ENSMUSG00000035392.17 ENSMUSG00000035392 ENSMUST00000128492 Dennd1a protein_coding Interval_63679 chr15 102746335 102747749 + 0 NA Intergenic Intergenic -36982 ENSMUSG00000023055.10 ENSMUSG00000023055 ENSMUST00000230374 Calcoco1 protein_coding Interval_129849 chr5 122736998 122737231 + 0 NA intron (ENSMUSG00000029471.13, intron 10 of 10) protein_coding-intron (ENSMUSG00000029471.13, intron 15 of 16) 29534 ENSMUSG00000029470.15 ENSMUSG00000029470 ENSMUST00000139712 P2rx4 protein_coding Interval_139673 chr6 106618998 106619231 + 0 NA TTS (ENSMUSG00000064293.14) protein_coding-TTS (ENSMUSG00000064293.14) -36389 ENSMUSG00000064293.14 ENSMUSG00000064293 ENSMUST00000142626 Cntn4 protein_coding Interval_74433 chr17 50426082 50428475 + 0 NA Intergenic Intergenic 88026 ENSMUSG00000117222.1 ENSMUSG00000117222 ENSMUST00000233175 Gm49906 lincRNA Interval_74689 chr17 55968967 55971254 + 0 NA promoter-TSS (ENSMUSG00000039154.8) protein_coding-promoter-TSS (ENSMUSG00000039154.8) -1324 ENSMUSG00000039154.8 ENSMUSG00000039154 ENSMUST00000223841 Shd protein_coding Interval_127718 chr5 107028106 107028415 + 0 NA Intergenic Intergenic -20576 ENSMUSG00000106554.1 ENSMUSG00000106554 ENSMUST00000199486 Gm33474 lincRNA Interval_27058 chr11 62605101 62608018 + 0 NA intron (ENSMUSG00000046417.14, intron 2 of 2) protein_coding-intron (ENSMUSG00000046417.14, intron 3 of 3) 793 ENSMUSG00000085762.1 ENSMUSG00000085762 ENSMUST00000123423 Lrrc75aos2 antisense Interval_22864 chr11 16851572 16851824 + 0 NA intron (ENSMUSG00000020122.16, intron 1 of 15) protein_coding-intron (ENSMUSG00000020122.16, intron 1 of 27) -20996 ENSMUSG00000085091.1 ENSMUSG00000085091 ENSMUST00000150329 Egfros antisense Interval_166668 chr9 61727252 61728453 + 0 NA Intergenic Intergenic -35232 ENSMUSG00000111739.1 ENSMUSG00000111739 ENSMUST00000213572 Gm47241 processed_pseudogene Interval_101707 chr3 9057432 9058556 + 0 NA Intergenic Intergenic -3970 ENSMUSG00000103116.1 ENSMUSG00000103116 ENSMUST00000194792 4930539M17Rik lincRNA Interval_83288 chr18 83557016 83557539 + 0 NA Intergenic Intergenic -31973 ENSMUSG00000118175.1 ENSMUSG00000118175 ENSMUST00000237450 Gm50416 lincRNA Interval_68209 chr16 68246865 68247498 + 0 NA Intergenic Intergenic -82326 ENSMUSG00000116638.1 ENSMUSG00000116638 ENSMUST00000232077 Gm49650 processed_pseudogene Interval_123717 chr5 34776101 34777176 + 0 NA intron (ENSMUSG00000029104.15, intron 1 of 17) protein_coding-intron (ENSMUSG00000029104.15, intron 1 of 66) -19150 ENSMUSG00000029104.15 ENSMUSG00000029104 ENSMUST00000124272 Htt protein_coding Interval_71590 chr17 24718075 24721339 + 0 NA promoter-TSS (ENSMUSG00000044533.15) protein_coding-promoter-TSS (ENSMUSG00000044533.15) 96 ENSMUSG00000089255.1 ENSMUSG00000089255 ENSMUST00000158630 Snora78 snoRNA Interval_81655 chr18 62901227 62902067 + 0 NA Intergenic Intergenic 20454 ENSMUSG00000117671.1 ENSMUSG00000117671 ENSMUST00000237856 Gm50128 bidirectional_promoter_lncRNA Interval_124271 chr5 43232347 43235390 + 0 NA promoter-TSS (ENSMUSG00000039782.15) protein_coding-promoter-TSS (ENSMUSG00000039782.15) 1117 ENSMUSG00000085720.8 ENSMUSG00000085720 ENSMUST00000140650 Gm7854 antisense Interval_99934 chr2 165999147 165999661 + 0 NA intron (ENSMUSG00000027678.17, intron 1 of 22) protein_coding-intron (ENSMUSG00000027678.17, intron 1 of 22) -6887 ENSMUSG00000087351.1 ENSMUSG00000087351 ENSMUST00000146963 Gm11464 lincRNA Interval_118410 chr4 131240599 131241138 + 0 NA Intergenic Intergenic 1591 ENSMUSG00000088041.1 ENSMUSG00000088041 ENSMUST00000157416 Gm25261 snoRNA Interval_87475 chr19 52759550 52760782 + 0 NA Intergenic Intergenic -163076 ENSMUSG00000117896.1 ENSMUSG00000117896 ENSMUST00000237126 AA387883 lincRNA Interval_34664 chr12 8486669 8486877 + 0 NA Intergenic Intergenic -6186 ENSMUSG00000112657.1 ENSMUSG00000112657 ENSMUST00000219344 BC106175 transcribed_processed_pseudogene Interval_168567 chr9 83628808 83629600 + 0 NA intron (ENSMUSG00000032261.16, intron 3 of 3) protein_coding-intron (ENSMUSG00000032261.16, intron 2 of 2) -55915 ENSMUSG00000110950.1 ENSMUSG00000110950 ENSMUST00000213703 Gm39384 lincRNA Interval_17618 chr10 78232795 78233717 + 0 NA intron (ENSMUSG00000000374.8, intron 1 of 4) protein_coding-intron (ENSMUSG00000000374.8, intron 1 of 22) 22855 ENSMUSG00000112433.1 ENSMUSG00000112433 ENSMUST00000218143 Gm30122 lincRNA Interval_150798 chr7 114731534 114732145 + 0 NA Intergenic Intergenic 13164 ENSMUSG00000030666.11 ENSMUSG00000030666 ENSMUST00000182044 Calcb protein_coding Interval_29200 chr11 81486224 81486472 + 0 NA intron (ENSMUSG00000020704.13, intron 1 of 9) protein_coding-intron (ENSMUSG00000020704.13, intron 1 of 9) 87125 ENSMUSG00000080980.1 ENSMUSG00000080980 ENSMUST00000117522 1700071K01Rik processed_pseudogene Interval_126376 chr5 87588353 87589240 + 0 NA intron (ENSMUSG00000029272.8, intron 2 of 7) protein_coding-intron (ENSMUSG00000029272.8, intron 2 of 7) 2798 ENSMUSG00000029272.8 ENSMUSG00000029272 ENSMUST00000031201 Sult1e1 protein_coding Interval_98245 chr2 150361629 150363247 + 0 NA intron (ENSMUSG00000063364.10, intron 1 of 4) protein_coding-intron (ENSMUSG00000063364.10, intron 1 of 3) 304 ENSMUSG00000063364.10 ENSMUSG00000063364 ENSMUST00000138130 3300002I08Rik protein_coding Interval_18917 chr10 93111059 93111577 + 0 NA Intergenic Intergenic 26067 ENSMUSG00000111013.1 ENSMUSG00000111013 ENSMUST00000214288 Gm32468 lincRNA Interval_99392 chr2 160561052 160561906 + 0 NA Intergenic Intergenic -21878 ENSMUSG00000078955.3 ENSMUSG00000078955 ENSMUST00000128681 Gm14222 sense_intronic Interval_102534 chr3 27550304 27550641 + 0 NA intron (ENSMUSG00000039286.12, intron 5 of 26) protein_coding-intron (ENSMUSG00000039286.12, intron 4 of 25) 3831 ENSMUSG00000106625.1 ENSMUSG00000106625 ENSMUST00000198723 Gm43344 TEC Interval_123423 chr5 32423975 32424250 + 0 NA Intergenic Intergenic 4109 ENSMUSG00000107211.1 ENSMUSG00000107211 ENSMUST00000202263 Gm5864 processed_pseudogene Interval_84981 chr19 20941182 20941613 + 0 NA exon (ENSMUSG00000118293.1, exon 2 of 5) antisense-exon (ENSMUSG00000118293.1, exon 2 of 5) 19005 ENSMUSG00000118293.1 ENSMUSG00000118293 ENSMUST00000238088 Gm32750 antisense Interval_35595 chr12 25144508 25145473 + 0 NA Intergenic Intergenic -5925 ENSMUSG00000113587.1 ENSMUSG00000113587 ENSMUST00000223481 Gm36287 lincRNA Interval_108594 chr3 129400060 129400824 + 0 NA Intergenic Intergenic 26332 ENSMUSG00000105278.1 ENSMUSG00000105278 ENSMUST00000195908 Gm42630 TEC Interval_131280 chr5 136142823 136144304 + 0 NA Intergenic Intergenic 7361 ENSMUSG00000039754.10 ENSMUSG00000039754 ENSMUST00000100568 Alkbh4 protein_coding Interval_77913 chr18 5426007 5426209 + 0 NA Intergenic Intergenic -55626 ENSMUSG00000117617.1 ENSMUSG00000117617 ENSMUST00000234572 Gm50065 lincRNA Interval_55451 chr14 87451830 87452488 + 0 NA intron (ENSMUSG00000022019.16, intron 1 of 11) protein_coding-intron (ENSMUSG00000022019.16, intron 1 of 13) -10469 ENSMUSG00000115484.1 ENSMUSG00000115484 ENSMUST00000227005 Gm33121 processed_pseudogene Interval_24755 chr11 36691164 36691365 + 0 NA intron (ENSMUSG00000049336.16, intron 2 of 28) protein_coding-intron (ENSMUSG00000049336.16, intron 2 of 28) -31618 ENSMUSG00000065173.1 ENSMUSG00000065173 ENSMUST00000083239 Gm22127 snRNA Interval_166881 chr9 63632775 63633962 + 0 NA intron (ENSMUSG00000037257.8, intron 3 of 6) protein_coding-intron (ENSMUSG00000037257.8, intron 5 of 9) 16380 ENSMUSG00000037257.8 ENSMUSG00000037257 ENSMUST00000213702 Aagab protein_coding Interval_170933 chr9 112458704 112459005 + 0 NA intron (ENSMUSG00000110876.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000110876.1, intron 1 of 1) 2776 ENSMUSG00000110876.1 ENSMUSG00000110876 ENSMUST00000216779 4933411E02Rik lincRNA Interval_33899 chr11 119264318 119264681 + 0 NA TTS (ENSMUSG00000039963.20) protein_coding-TTS (ENSMUSG00000039963.20) -10357 ENSMUSG00000025579.14 ENSMUSG00000025579 ENSMUST00000138510 Gaa protein_coding Interval_118997 chr4 134914439 134915448 + 0 NA promoter-TSS (ENSMUSG00000028822.11) protein_coding-promoter-TSS (ENSMUSG00000028822.11) 72 ENSMUSG00000028822.11 ENSMUSG00000028822 ENSMUST00000105863 Tmem50a protein_coding Interval_91967 chr2 52078403 52079028 + 0 NA intron (ENSMUSG00000036202.16, intron 7 of 35) protein_coding-intron (ENSMUSG00000036202.16, intron 7 of 35) -33418 ENSMUSG00000036202.16 ENSMUSG00000036202 ENSMUST00000152178 Rif1 protein_coding Interval_150161 chr7 107479873 107480060 + 0 NA intron (ENSMUSG00000062542.11, intron 3 of 6) protein_coding-intron (ENSMUSG00000062542.11, intron 3 of 6) -24096 ENSMUSG00000062542.11 ENSMUSG00000062542 ENSMUST00000127444 Syt9 protein_coding Interval_73273 chr17 35928492 35928914 + 0 NA TTS (ENSMUSG00000039220.16) protein_coding-TTS (ENSMUSG00000039220.16) 7247 ENSMUSG00000049832.6 ENSMUSG00000049832 ENSMUST00000173786 Rbx1-ps processed_pseudogene Interval_88995 chr2 14124806 14126361 + 0 NA intron (ENSMUSG00000026718.17, intron 3 of 11) protein_coding-intron (ENSMUSG00000026718.17, intron 5 of 12) -24237 ENSMUSG00000103901.1 ENSMUSG00000103901 ENSMUST00000194683 Gm37499 TEC Interval_6890 chr1 120398549 120398780 + 0 NA Intergenic Intergenic -37141 ENSMUSG00000101275.1 ENSMUSG00000101275 ENSMUST00000186237 1700012E03Rik lincRNA Interval_138936 chr6 93647519 93649126 + 0 NA Intergenic Intergenic 1903 ENSMUSG00000107739.1 ENSMUSG00000107739 ENSMUST00000203479 Gm7812 processed_pseudogene Interval_38230 chr12 76501788 76501980 + 0 NA Intergenic Intergenic 9529 ENSMUSG00000112167.1 ENSMUSG00000112167 ENSMUST00000218608 Gm47053 processed_pseudogene Interval_173915 chrX 110816576 110817351 + 0 NA exon (ENSMUSG00000056854.4, exon 1 of 1) protein_coding-exon (ENSMUSG00000056854.4, exon 1 of 1) 2683 ENSMUSG00000056854.4 ENSMUSG00000056854 ENSMUST00000078229 Pou3f4 protein_coding Interval_129961 chr5 123325741 123325959 + 0 NA intron (ENSMUSG00000029442.18, intron 8 of 8) protein_coding-intron (ENSMUSG00000029442.18, intron 7 of 7) -15526 ENSMUSG00000087063.1 ENSMUSG00000087063 ENSMUST00000133476 Gm15857 antisense Interval_150334 chr7 109680412 109681604 + 0 NA intron (ENSMUSG00000031024.13, intron 1 of 3) protein_coding-intron (ENSMUSG00000031024.13, intron 1 of 3) -18517 ENSMUSG00000109499.1 ENSMUSG00000109499 ENSMUST00000207292 Gm44864 antisense Interval_25535 chr11 49633789 49634422 + 0 NA exon (ENSMUSG00000020357.3, exon 13 of 30) protein_coding-exon (ENSMUSG00000020357.3, exon 13 of 30) 24842 ENSMUSG00000020357.3 ENSMUSG00000020357 ENSMUST00000020617 Flt4 protein_coding Interval_2806 chr1 45593720 45595073 + 0 NA Intergenic Intergenic -7630 ENSMUSG00000100894.1 ENSMUSG00000100894 ENSMUST00000185744 Gm8304 processed_pseudogene Interval_139586 chr6 101695619 101696013 + 0 NA Intergenic Intergenic 43582 ENSMUSG00000107738.1 ENSMUSG00000107738 ENSMUST00000204183 Gm32453 processed_pseudogene Interval_70300 chr17 8327969 8330829 + 0 NA intron (ENSMUSG00000117569.1, intron 1 of 5) processed_transcript-intron (ENSMUSG00000117569.1, intron 1 of 5) -8060 ENSMUSG00000055945.8 ENSMUSG00000055945 ENSMUST00000163887 Prr18 protein_coding Interval_108588 chr3 129317154 129317483 + 0 NA intron (ENSMUSG00000028024.14, intron 3 of 17) protein_coding-intron (ENSMUSG00000028024.14, intron 3 of 19) 14946 ENSMUSG00000028024.14 ENSMUSG00000028024 ENSMUST00000165217 Enpep protein_coding Interval_11969 chr1 187895652 187896162 + 0 NA intron (ENSMUSG00000026610.13, intron 3 of 3) protein_coding-intron (ENSMUSG00000026610.13, intron 2 of 7) 113083 ENSMUSG00000103577.1 ENSMUSG00000103577 ENSMUST00000195397 9330162B11Rik antisense Interval_84980 chr19 20932514 20934087 + 0 NA intron (ENSMUSG00000118293.1, intron 1 of 4) protein_coding-intron (ENSMUSG00000024749.9, intron 2 of 20) 10908 ENSMUSG00000118293.1 ENSMUSG00000118293 ENSMUST00000238088 Gm32750 antisense Interval_145984 chr7 42852719 42852959 + 0 NA intron (ENSMUSG00000092225.1, intron 1 of 3) protein_coding-intron (ENSMUSG00000092225.1, intron 1 of 3) 14395 ENSMUSG00000092225.1 ENSMUSG00000092225 ENSMUST00000174558 Gm2381 protein_coding Interval_113816 chr4 59018243 59019295 + 0 NA intron (ENSMUSG00000070972.13, intron 3 of 4) protein_coding-intron (ENSMUSG00000070972.13, intron 2 of 3) 15559 ENSMUSG00000092345.1 ENSMUSG00000092345 ENSMUST00000174664 Gm20503 protein_coding Interval_103703 chr3 51739219 51739742 + 0 NA intron (ENSMUSG00000061143.15, intron 2 of 4) protein_coding-intron (ENSMUSG00000061143.15, intron 1 of 3) 22608 ENSMUSG00000102732.1 ENSMUSG00000102732 ENSMUST00000194588 Gm37342 TEC Interval_45268 chr13 53764644 53765562 + 0 NA Intergenic Intergenic -11524 ENSMUSG00000114143.1 ENSMUSG00000114143 ENSMUST00000221931 Gm48548 lincRNA Interval_68272 chr16 71922697 71923655 + 0 NA Intergenic Intergenic 44132 ENSMUSG00000116901.1 ENSMUSG00000116901 ENSMUST00000232427 Gm49667 processed_pseudogene Interval_164957 chr9 43388924 43389913 + 0 NA Intergenic Intergenic 12793 ENSMUSG00000110823.1 ENSMUSG00000110823 ENSMUST00000216190 Gm36799 lincRNA Interval_109048 chr3 135451995 135452809 + 0 NA exon (ENSMUSG00000078578.9, exon 1 of 1) protein_coding-exon (ENSMUSG00000078578.9, exon 1 of 1) -13737 ENSMUSG00000097032.2 ENSMUSG00000097032 ENSMUST00000181619 4930539J05Rik antisense Interval_110379 chr3 157566721 157568507 + 0 NA exon (ENSMUSG00000040016.16, exon 1 of 3) protein_coding-exon (ENSMUSG00000040016.16, exon 1 of 3) 714 ENSMUSG00000040016.16 ENSMUSG00000040016 ENSMUST00000173533 Ptger3 protein_coding Interval_167486 chr9 69888570 69889425 + 0 NA Intergenic Intergenic -95846 ENSMUSG00000111286.1 ENSMUSG00000111286 ENSMUST00000216018 Gm18745 processed_pseudogene Interval_109446 chr3 142484985 142485295 + 0 NA Intergenic Intergenic -17656 ENSMUSG00000105504.4 ENSMUSG00000105504 ENSMUST00000199578 Gbp5 protein_coding Interval_58102 chr15 27919484 27920121 + 0 NA promoter-TSS (ENSMUSG00000022263.10) protein_coding-promoter-TSS (ENSMUSG00000022263.10) -52571 ENSMUSG00000115161.1 ENSMUSG00000115161 ENSMUST00000228406 Gm20555 TEC Interval_66298 chr16 32957840 32958058 + 0 NA intron (ENSMUSG00000022801.13, intron 4 of 18) protein_coding-intron (ENSMUSG00000022801.13, intron 4 of 20) 34731 ENSMUSG00000091997.1 ENSMUSG00000091997 ENSMUST00000163830 Gm6611 processed_pseudogene Interval_159026 chr8 88919912 88920605 + 0 NA Intergenic Intergenic -57184 ENSMUSG00000109778.1 ENSMUSG00000109778 ENSMUST00000211407 Gm45504 TEC Interval_125495 chr5 67647377 67648149 + 0 NA TTS (ENSMUSG00000085363.1) antisense-TTS (ENSMUSG00000085363.1) 5362 ENSMUSG00000085363.1 ENSMUSG00000085363 ENSMUST00000145914 Gm15478 antisense Interval_75491 chr17 67338979 67340063 + 0 NA intron (ENSMUSG00000033278.10, intron 1 of 19) protein_coding-intron (ENSMUSG00000033278.10, intron 1 of 32) -212086 ENSMUSG00000087829.1 ENSMUSG00000087829 ENSMUST00000157204 Gm22277 misc_RNA Interval_139549 chr6 100910744 100911006 + 0 NA Intergenic Intergenic 12281 ENSMUSG00000108074.1 ENSMUSG00000108074 ENSMUST00000205099 4930595O18Rik TEC Interval_2078 chr1 36277353 36277935 + 0 NA Intergenic Intergenic -2965 ENSMUSG00000047180.8 ENSMUSG00000047180 ENSMUST00000188666 Neurl3 protein_coding Interval_73885 chr17 45230102 45230484 + 0 NA Intergenic Intergenic 20327 ENSMUSG00000096425.1 ENSMUSG00000096425 ENSMUST00000178626 Gm24979 miRNA Interval_18736 chr10 89780356 89780605 + 0 NA intron (ENSMUSG00000019951.10, intron 3 of 11) protein_coding-intron (ENSMUSG00000019951.10, intron 5 of 20) 35242 ENSMUSG00000019951.10 ENSMUSG00000019951 ENSMUST00000219819 Uhrf1bp1l protein_coding Interval_81048 chr18 53293543 53294589 + 0 NA intron (ENSMUSG00000024535.16, intron 1 of 3) protein_coding-intron (ENSMUSG00000024535.16, intron 1 of 7) 48338 ENSMUSG00000024535.16 ENSMUSG00000024535 ENSMUST00000025417 Snx24 protein_coding Interval_53751 chr14 61511422 61511970 + 0 NA intron (ENSMUSG00000115656.1, intron 2 of 3) lincRNA-intron (ENSMUSG00000115656.1, intron 2 of 3) 19008 ENSMUSG00000115656.1 ENSMUSG00000115656 ENSMUST00000227369 4930556J02Rik lincRNA Interval_81432 chr18 60722308 60723808 + 0 NA intron (ENSMUSG00000054008.9, intron 1 of 14) protein_coding-intron (ENSMUSG00000054008.9, intron 1 of 2) 10092 ENSMUSG00000054008.9 ENSMUSG00000054008 ENSMUST00000237070 Ndst1 protein_coding Interval_161543 chr8 121099038 121099284 + 0 NA intron (ENSMUSG00000031816.15, intron 2 of 3) protein_coding-intron (ENSMUSG00000031816.15, intron 7 of 7) 2316 ENSMUSG00000031816.15 ENSMUSG00000031816 ENSMUST00000128503 Mthfsd protein_coding Interval_11246 chr1 180433190 180435522 + 0 NA exon (ENSMUSG00000053963.7, exon 4 of 4) protein_coding-exon (ENSMUSG00000053963.7, exon 4 of 4) 31525 ENSMUSG00000053963.7 ENSMUSG00000053963 ENSMUST00000211782 Stum protein_coding Interval_39151 chr12 85461983 85462472 + 0 NA Intergenic Intergenic -12464 ENSMUSG00000021250.13 ENSMUSG00000021250 ENSMUST00000134311 Fos protein_coding Interval_124973 chr5 62856117 62856291 + 0 NA intron (ENSMUSG00000090326.2, intron 8 of 9) protein_coding-intron (ENSMUSG00000090326.2, intron 7 of 8) 44530 ENSMUSG00000090326.2 ENSMUSG00000090326 ENSMUST00000170704 Dthd1 protein_coding Interval_108994 chr3 134235669 134236617 + 0 NA promoter-TSS (ENSMUSG00000044365.15) protein_coding-promoter-TSS (ENSMUSG00000044365.15) 4440 ENSMUSG00000084564.1 ENSMUSG00000084564 ENSMUST00000122615 Mir1895 miRNA Interval_28896 chr11 79127955 79129746 + 0 NA intron (ENSMUSG00000018334.18, intron 1 of 12) protein_coding-intron (ENSMUSG00000018334.18, intron 1 of 18) -69014 ENSMUSG00000018334.18 ENSMUSG00000018334 ENSMUST00000129463 Ksr1 protein_coding Interval_70636 chr17 12637163 12637893 + 0 NA Intergenic Intergenic 38168 ENSMUSG00000023829.9 ENSMUSG00000023829 ENSMUST00000233601 Slc22a1 protein_coding Interval_91728 chr2 48895569 48895739 + 0 NA intron (ENSMUSG00000052155.5, intron 4 of 5) protein_coding-intron (ENSMUSG00000052155.5, intron 8 of 10) 5265 ENSMUSG00000052155.5 ENSMUSG00000052155 ENSMUST00000156681 Acvr2a protein_coding Interval_161667 chr8 121906788 121908331 + 0 NA promoter-TSS (ENSMUSG00000074052.7) bidirectional_promoter_lncRNA-promoter-TSS (ENSMUSG00000074052.7) -274 ENSMUSG00000074052.7 ENSMUSG00000074052 ENSMUST00000140928 BC048644 bidirectional_promoter_lncRNA Interval_123270 chr5 31021896 31023534 + 0 NA Intergenic Intergenic 19890 ENSMUSG00000006641.12 ENSMUSG00000006641 ENSMUST00000200816 Slc5a6 protein_coding Interval_73778 chr17 43567726 43568962 + 0 NA promoter-TSS (ENSMUSG00000023913.17) protein_coding-promoter-TSS (ENSMUSG00000023913.17) -329 ENSMUSG00000023913.17 ENSMUSG00000023913 ENSMUST00000163489 Pla2g7 protein_coding Interval_92268 chr2 57616718 57617100 + 0 NA Intergenic Intergenic 12319 ENSMUSG00000081642.1 ENSMUSG00000081642 ENSMUST00000120373 Gm13532 processed_pseudogene Interval_23440 chr11 22631694 22632741 + 0 NA Intergenic Intergenic -5553 ENSMUSG00000083008.1 ENSMUSG00000083008 ENSMUST00000119022 Gm12053 processed_pseudogene Interval_130772 chr5 130287710 130288327 + 0 NA intron (ENSMUSG00000056310.14, intron 10 of 15) protein_coding-intron (ENSMUSG00000056310.14, intron 10 of 15) 32399 ENSMUSG00000056310.14 ENSMUSG00000056310 ENSMUST00000147619 Tyw1 protein_coding Interval_485 chr1 6281955 6283235 + 0 NA Intergenic Intergenic 54593 ENSMUSG00000025907.14 ENSMUSG00000025907 ENSMUST00000159656 Rb1cc1 protein_coding Interval_38586 chr12 80292086 80292369 + 0 NA Intergenic Intergenic 32784 ENSMUSG00000112336.1 ENSMUSG00000112336 ENSMUST00000218666 Gm47766 antisense Interval_65661 chr16 24954930 24955929 + 0 NA intron (ENSMUSG00000033306.15, intron 5 of 7) protein_coding-intron (ENSMUSG00000033306.15, intron 10 of 12) 71256 ENSMUSG00000077602.1 ENSMUSG00000077602 ENSMUST00000104414 Gm22672 snoRNA Interval_13778 chr10 22000224 22000794 + 0 NA TTS (ENSMUSG00000019970.15) protein_coding-TTS (ENSMUSG00000019970.15) 21837 ENSMUSG00000019970.15 ENSMUSG00000019970 ENSMUST00000135195 Sgk1 protein_coding Interval_43239 chr13 26521859 26522266 + 0 NA Intergenic Intergenic 29508 ENSMUSG00000060198.7 ENSMUSG00000060198 ENSMUST00000180940 Gm11353 processed_pseudogene Interval_37206 chr12 59664923 59665111 + 0 NA TTS (ENSMUSG00000077586.1) snoRNA-TTS (ENSMUSG00000077586.1) 767 ENSMUSG00000077586.1 ENSMUSG00000077586 ENSMUST00000104398 Gm24377 snoRNA Interval_11921 chr1 187163365 187164143 + 0 NA intron (ENSMUSG00000026611.17, intron 1 of 2) protein_coding-intron (ENSMUSG00000026611.17, intron 5 of 9) -20657 ENSMUSG00000026611.17 ENSMUSG00000026611 ENSMUST00000183469 Spata17 protein_coding Interval_137904 chr6 83277091 83277772 + 0 NA promoter-TSS (ENSMUSG00000068323.12) protein_coding-promoter-TSS (ENSMUSG00000068323.12) 38 ENSMUSG00000068323.12 ENSMUSG00000068323 ENSMUST00000131432 Slc4a5 protein_coding Interval_75822 chr17 71651937 71652331 + 0 NA intron (ENSMUSG00000041057.10, intron 4 of 5) protein_coding-intron (ENSMUSG00000041057.10, intron 14 of 17) 9438 ENSMUSG00000041057.10 ENSMUSG00000041057 ENSMUST00000234339 Wdr43 protein_coding Interval_118022 chr4 128272593 128273535 + 0 NA intron (ENSMUSG00000028804.20, intron 5 of 70) protein_coding-intron (ENSMUSG00000028804.20, intron 5 of 12) 12020 ENSMUSG00000085717.1 ENSMUSG00000085717 ENSMUST00000131581 Hmgb4os antisense Interval_84292 chr19 9893315 9893530 + 0 NA TTS (ENSMUSG00000024660.9) protein_coding-TTS (ENSMUSG00000024660.9) 5285 ENSMUSG00000118325.1 ENSMUSG00000118325 ENSMUST00000237300 Gm50324 TEC Interval_157512 chr8 71058754 71059869 + 0 NA intron (ENSMUSG00000110554.1, intron 5 of 14) lincRNA-intron (ENSMUSG00000101854.2, intron 1 of 4) 26447 ENSMUSG00000101854.2 ENSMUSG00000101854 ENSMUST00000170101 1700026F02Rik lincRNA Interval_3529 chr1 59375928 59377717 + 0 NA Intergenic Intergenic -2108 ENSMUSG00000099922.1 ENSMUSG00000099922 ENSMUST00000187523 Gm29016 lincRNA Interval_49985 chr13 119333963 119334181 + 0 NA Intergenic Intergenic -54527 ENSMUSG00000114736.1 ENSMUSG00000114736 ENSMUST00000223952 Gm47336 lincRNA Interval_138197 chr6 86136466 86136656 + 0 NA Intergenic Intergenic -10591 ENSMUSG00000107857.1 ENSMUSG00000107857 ENSMUST00000203685 Gm19596 unprocessed_pseudogene Interval_75030 chr17 61582149 61582798 + 0 NA Intergenic Intergenic 185163 ENSMUSG00000117016.1 ENSMUSG00000117016 ENSMUST00000233539 Gm6174 processed_pseudogene Interval_27194 chr11 63978724 63979514 + 0 NA intron (ENSMUSG00000042148.8, intron 5 of 6) protein_coding-intron (ENSMUSG00000042148.8, intron 5 of 6) 14893 ENSMUSG00000086359.1 ENSMUSG00000086359 ENSMUST00000146915 9630013K17Rik antisense Interval_110433 chr3 158068181 158069277 + 0 NA TTS (ENSMUSG00000063052.9) protein_coding-TTS (ENSMUSG00000063052.9) 7383 ENSMUSG00000104597.1 ENSMUSG00000104597 ENSMUST00000200255 B230334C09Rik antisense Interval_13686 chr10 21042559 21043429 + 0 NA intron (ENSMUSG00000019986.17, intron 3 of 5) protein_coding-intron (ENSMUSG00000019986.17, intron 19 of 23) 5905 ENSMUSG00000111227.1 ENSMUSG00000111227 ENSMUST00000214691 Gm20149 antisense Interval_31670 chr11 102162932 102163156 + 0 NA TTS (ENSMUSG00000020922.11) protein_coding-TTS (ENSMUSG00000020922.11) -6697 ENSMUSG00000020921.6 ENSMUSG00000020921 ENSMUST00000136434 Tmem101 protein_coding Interval_159434 chr8 94649770 94650006 + 0 NA intron (ENSMUSG00000050079.10, intron 11 of 13) protein_coding-intron (ENSMUSG00000050079.10, intron 12 of 14) -17577 ENSMUSG00000031776.17 ENSMUSG00000031776 ENSMUST00000212254 Arl2bp protein_coding Interval_9809 chr1 162558324 162558524 + 0 NA Intergenic Intergenic -9895 ENSMUSG00000026694.19 ENSMUSG00000026694 ENSMUST00000195027 Eef1aknmt protein_coding Interval_32214 chr11 106209381 106209912 + 0 NA intron (ENSMUSG00000078622.8, intron 4 of 12) protein_coding-intron (ENSMUSG00000078622.8, intron 4 of 12) -4104 ENSMUSG00000078622.8 ENSMUSG00000078622 ENSMUST00000153982 Ccdc47 protein_coding Interval_104585 chr3 68542673 68543496 + 0 NA intron (ENSMUSG00000027777.15, intron 2 of 5) protein_coding-intron (ENSMUSG00000027777.15, intron 2 of 7) 4624 ENSMUSG00000084617.1 ENSMUSG00000084617 ENSMUST00000122668 Gm22073 snRNA Interval_157414 chr8 70211847 70212954 + 0 NA promoter-TSS (ENSMUSG00000002346.16) protein_coding-promoter-TSS (ENSMUSG00000002346.16) -95 ENSMUSG00000002346.16 ENSMUSG00000002346 ENSMUST00000134596 Slc25a42 protein_coding Interval_127423 chr5 103833829 103834533 + 0 NA exon (ENSMUSG00000029313.18, exon 11 of 20) protein_coding-exon (ENSMUSG00000029313.18, exon 11 of 20) 40188 ENSMUSG00000029312.12 ENSMUSG00000029312 ENSMUST00000147184 Klhl8 protein_coding Interval_16290 chr10 61998289 62000687 + 0 NA Intergenic Intergenic -23916 ENSMUSG00000112018.1 ENSMUSG00000112018 ENSMUST00000220135 Gm47919 TEC Interval_49990 chr13 119381019 119381573 + 0 NA intron (ENSMUSG00000116207.1, intron 7 of 16) protein_coding-intron (ENSMUSG00000025453.18, intron 7 of 14) 27656 ENSMUSG00000116207.1 ENSMUSG00000116207 ENSMUST00000223268 Nnt protein_coding Interval_40816 chr12 108604517 108606081 + 0 NA promoter-TSS (ENSMUSG00000021262.15) protein_coding-promoter-TSS (ENSMUSG00000021262.15) -49835 ENSMUSG00000097788.2 ENSMUSG00000097788 ENSMUST00000220796 Gm16596 antisense Interval_23034 chr11 19118437 19118790 + 0 NA Intergenic Intergenic -1179 ENSMUSG00000102585.1 ENSMUSG00000102585 ENSMUST00000193150 Gm37439 TEC Interval_123376 chr5 31998866 31999228 + 0 NA intron (ENSMUSG00000052139.18, intron 5 of 6) protein_coding-intron (ENSMUSG00000052139.18, intron 9 of 13) 11816 ENSMUSG00000106894.1 ENSMUSG00000106894 ENSMUST00000201542 Gm17130 antisense Interval_162995 chr9 14348184 14348932 + 0 NA Intergenic Intergenic 12946 ENSMUSG00000111555.1 ENSMUSG00000111555 ENSMUST00000216728 Gm47326 lincRNA Interval_164790 chr9 41899434 41900257 + 0 NA Intergenic Intergenic -9241 ENSMUSG00000111726.1 ENSMUSG00000111726 ENSMUST00000217258 Gm40513 lincRNA Interval_125858 chr5 75084831 75086160 + 0 NA Intergenic Intergenic 9893 ENSMUSG00000035946.7 ENSMUSG00000035946 ENSMUST00000160104 Gsx2 protein_coding Interval_99428 chr2 160996258 160996576 + 0 NA promoter-TSS (ENSMUSG00000077795.1) snoRNA-promoter-TSS (ENSMUSG00000077795.1) -360 ENSMUSG00000077795.1 ENSMUSG00000077795 ENSMUST00000104607 Gm25561 snoRNA Interval_69657 chr16 94965289 94966107 + 0 NA intron (ENSMUSG00000043301.16, intron 1 of 2) protein_coding-intron (ENSMUSG00000043301.16, intron 1 of 4) 96234 ENSMUSG00000095435.1 ENSMUSG00000095435 ENSMUST00000175509 Gm22745 miRNA Interval_74224 chr17 47565722 47566605 + 0 NA intron (ENSMUSG00000034165.16, intron 1 of 6) protein_coding-intron (ENSMUSG00000034165.16, intron 1 of 6) -30161 ENSMUSG00000034165.16 ENSMUSG00000034165 ENSMUST00000183206 Ccnd3 protein_coding Interval_3728 chr1 62384557 62384968 + 0 NA intron (ENSMUSG00000052062.14, intron 18 of 21) protein_coding-intron (ENSMUSG00000052062.14, intron 17 of 21) 114499 ENSMUSG00000085400.1 ENSMUSG00000085400 ENSMUST00000147177 Pard3bos3 antisense Interval_58081 chr15 27740174 27740520 + 0 NA intron (ENSMUSG00000022263.10, intron 4 of 7) protein_coding-intron (ENSMUSG00000022263.10, intron 53 of 56) -80195 ENSMUSG00000056069.10 ENSMUSG00000056069 ENSMUST00000232492 Otulinl protein_coding Interval_161220 chr8 118793869 118794074 + 0 NA intron (ENSMUSG00000031841.19, intron 6 of 8) protein_coding-intron (ENSMUSG00000031841.19, intron 4 of 13) 67071 ENSMUSG00000087707.1 ENSMUSG00000087707 ENSMUST00000157082 Gm22999 snoRNA Interval_144063 chr7 19255818 19256109 + 0 NA TTS (ENSMUSG00000030403.9) protein_coding-TTS (ENSMUSG00000030403.9) -2529 ENSMUSG00000089636.1 ENSMUSG00000089636 ENSMUST00000159981 1700058P15Rik antisense Interval_138118 chr6 85293291 85294680 + 0 NA TTS (ENSMUSG00000033720.12) protein_coding-TTS (ENSMUSG00000033720.12) 39437 ENSMUSG00000033720.12 ENSMUSG00000033720 ENSMUST00000203035 Sfxn5 protein_coding Interval_105775 chr3 89266228 89266991 + 0 NA promoter-TSS (ENSMUSG00000042737.9) protein_coding-promoter-TSS (ENSMUSG00000042737.9) -30 ENSMUSG00000042737.9 ENSMUSG00000042737 ENSMUST00000137975 Dpm3 protein_coding Interval_115495 chr4 99444638 99446303 + 0 NA Intergenic Intergenic -14216 ENSMUSG00000081150.1 ENSMUSG00000081150 ENSMUST00000118675 Gm12684 processed_pseudogene Interval_41230 chr12 111990497 111990779 + 0 NA intron (ENSMUSG00000054003.13, intron 2 of 35) protein_coding-intron (ENSMUSG00000054003.13, intron 2 of 35) -10495 ENSMUSG00000091402.7 ENSMUSG00000091402 ENSMUST00000185354 Rd3l protein_coding Interval_46377 chr13 64333913 64334402 + 0 NA Intergenic Intergenic -11239 ENSMUSG00000118556.1 ENSMUSG00000118556 ENSMUST00000238814 CT030159.1 processed_pseudogene Interval_82047 chr18 67353019 67353814 + 0 NA intron (ENSMUSG00000024526.9, intron 1 of 4) protein_coding-intron (ENSMUSG00000024526.9, intron 1 of 4) -9313 ENSMUSG00000046415.11 ENSMUSG00000046415 ENSMUST00000138236 B430212C06Rik processed_transcript Interval_125292 chr5 65991065 65991538 + 0 NA promoter-TSS (ENSMUSG00000054598.13) protein_coding-promoter-TSS (ENSMUSG00000054598.13) 2256 ENSMUSG00000093070.1 ENSMUSG00000093070 ENSMUST00000175329 Gm25952 miRNA Interval_166256 chr9 57820372 57821058 + 0 NA promoter-TSS (ENSMUSG00000004661.15) protein_coding-promoter-TSS (ENSMUSG00000004661.15) -24494 ENSMUSG00000004661.15 ENSMUSG00000004661 ENSMUST00000167670 Arid3b protein_coding Interval_50465 chr14 13751655 13752190 + 0 NA Intergenic Intergenic 26229 ENSMUSG00000098694.1 ENSMUSG00000098694 ENSMUST00000184558 Gm27506 miRNA Interval_143626 chr7 13338780 13339150 + 0 NA exon (ENSMUSG00000087915.1, exon 1 of 1) misc_RNA-exon (ENSMUSG00000087915.1, exon 1 of 1) 135 ENSMUSG00000087915.1 ENSMUSG00000087915 ENSMUST00000157290 Gm24909 misc_RNA Interval_125947 chr5 76139774 76140907 + 0 NA promoter-TSS (ENSMUSG00000029233.15) protein_coding-promoter-TSS (ENSMUSG00000029233.15) -360 ENSMUSG00000029233.15 ENSMUSG00000029233 ENSMUST00000124217 Srd5a3 protein_coding Interval_127942 chr5 109673487 109673740 + 0 NA TTS (ENSMUSG00000072763.2) protein_coding-TTS (ENSMUSG00000072763.2) 17428 ENSMUSG00000072763.2 ENSMUSG00000072763 ENSMUST00000092720 5430403G16Rik protein_coding Interval_72663 chr17 31409514 31410349 + 0 NA intron (ENSMUSG00000041119.12, intron 1 of 13) protein_coding-intron (ENSMUSG00000041119.12, intron 1 of 18) 23674 ENSMUSG00000041119.12 ENSMUSG00000041119 ENSMUST00000236367 Pde9a protein_coding Interval_21583 chr10 130287822 130288164 + 0 NA Intergenic Intergenic -7753 ENSMUSG00000048015.4 ENSMUSG00000048015 ENSMUST00000061571 Neurod4 protein_coding Interval_132950 chr5 148920655 148920880 + 0 NA intron (ENSMUSG00000041298.15, intron 2 of 3) protein_coding-intron (ENSMUSG00000041298.15, intron 2 of 10) -5921 ENSMUSG00000106810.1 ENSMUSG00000106810 ENSMUST00000202134 Gm43600 unprocessed_pseudogene Interval_50269 chr14 11556000 11556642 + 0 NA intron (ENSMUSG00000021745.14, intron 1 of 3) protein_coding-intron (ENSMUSG00000021745.14, intron 1 of 29) -35551 ENSMUSG00000114849.1 ENSMUSG00000114849 ENSMUST00000224543 Gm48595 lincRNA Interval_69692 chr16 95600796 95602854 + 0 NA Intergenic Intergenic -71460 ENSMUSG00000040732.20 ENSMUSG00000040732 ENSMUST00000121809 Erg protein_coding Interval_120460 chr4 148758599 148759183 + 0 NA Intergenic Intergenic 45188 ENSMUSG00000087273.1 ENSMUSG00000087273 ENSMUST00000139895 Gm13203 lincRNA Interval_174799 chrX 166745006 166745262 + 0 NA Intergenic Intergenic 83109 ENSMUSG00000086860.1 ENSMUSG00000086860 ENSMUST00000135086 Gm1720 lincRNA Interval_135190 chr6 37395906 37396342 + 0 NA intron (ENSMUSG00000038648.5, intron 1 of 11) protein_coding-intron (ENSMUSG00000038648.5, intron 1 of 11) -59589 ENSMUSG00000038648.5 ENSMUSG00000038648 ENSMUST00000128534 Creb3l2 protein_coding Interval_25541 chr11 49675128 49675676 + 0 NA exon (ENSMUSG00000020362.13, exon 12 of 12) protein_coding-exon (ENSMUSG00000020362.13, exon 12 of 12) 3655 ENSMUSG00000083061.1 ENSMUSG00000083061 ENSMUST00000118307 Gm12191 processed_pseudogene Interval_9116 chr1 153723190 153723670 + 0 NA exon (ENSMUSG00000100334.1, exon 3 of 3) lincRNA-exon (ENSMUSG00000100334.1, exon 3 of 3) 8776 ENSMUSG00000102404.1 ENSMUSG00000102404 ENSMUST00000193511 5530400K19Rik TEC Interval_4112 chr1 68757116 68757320 + 0 NA intron (ENSMUSG00000062209.15, intron 1 of 18) protein_coding-intron (ENSMUSG00000062209.15, intron 1 of 27) 4509 ENSMUSG00000103809.1 ENSMUSG00000103809 ENSMUST00000195066 Gm37061 TEC Interval_31105 chr11 98157452 98157642 + 0 NA TTS (ENSMUSG00000018160.15) protein_coding-TTS (ENSMUSG00000018160.15) 3475 ENSMUSG00000018160.15 ENSMUSG00000018160 ENSMUST00000129557 Med1 protein_coding Interval_38262 chr12 76777637 76778081 + 0 NA intron (ENSMUSG00000033373.16, intron 3 of 13) protein_coding-intron (ENSMUSG00000090258.7, intron 3 of 3) 9371 ENSMUSG00000090258.7 ENSMUSG00000090258 ENSMUST00000152917 Churc1 protein_coding Interval_92193 chr2 55789646 55789941 + 0 NA Intergenic Intergenic 14245 ENSMUSG00000082971.1 ENSMUSG00000082971 ENSMUST00000120782 Gm13517 processed_pseudogene Interval_109441 chr3 142454558 142454831 + 0 NA Intergenic Intergenic -48102 ENSMUSG00000105504.4 ENSMUSG00000105504 ENSMUST00000199578 Gbp5 protein_coding Interval_130585 chr5 129036578 129036874 + 0 NA Intergenic Intergenic 16524 ENSMUSG00000029430.13 ENSMUSG00000029430 ENSMUST00000111343 Ran protein_coding Interval_139920 chr6 112742944 112743246 + 0 NA intron (ENSMUSG00000030257.16, intron 5 of 7) protein_coding-intron (ENSMUSG00000030257.16, intron 14 of 21) -46462 ENSMUSG00000030254.16 ENSMUSG00000030254 ENSMUST00000135092 Rad18 protein_coding Interval_34204 chr11 121276764 121277273 + 0 NA intron (ENSMUSG00000039275.9, intron 1 of 8) protein_coding-intron (ENSMUSG00000039275.9, intron 1 of 8) -13726 ENSMUSG00000039275.9 ENSMUSG00000039275 ENSMUST00000151492 Foxk2 protein_coding Interval_122841 chr5 26006513 26008172 + 0 NA exon (ENSMUSG00000090671.1, exon 1 of 1) processed_pseudogene-exon (ENSMUSG00000090671.1, exon 1 of 1) 315 ENSMUSG00000090671.1 ENSMUSG00000090671 ENSMUST00000170449 Gm5067 processed_pseudogene Interval_42936 chr13 21495195 21496351 + 0 NA exon (ENSMUSG00000078139.3, exon 1 of 1) protein_coding-exon (ENSMUSG00000078139.3, exon 1 of 1) 550 ENSMUSG00000078139.3 ENSMUSG00000078139 ENSMUST00000104942 AK157302 protein_coding Interval_91488 chr2 39370353 39371007 + 0 NA Intergenic Intergenic -24733 ENSMUSG00000083401.1 ENSMUSG00000083401 ENSMUST00000120391 Gm13506 unprocessed_pseudogene Interval_158216 chr8 79890060 79891449 + 0 NA Intergenic Intergenic -26675 ENSMUSG00000110188.1 ENSMUSG00000110188 ENSMUST00000210391 Gm45432 processed_pseudogene Interval_64908 chr16 17131525 17132998 + 0 NA exon (ENSMUSG00000022769.9, exon 1 of 3) protein_coding-exon (ENSMUSG00000022769.9, exon 1 of 3) 122 ENSMUSG00000022769.9 ENSMUSG00000022769 ENSMUST00000023453 Sdf2l1 protein_coding Interval_75452 chr17 66650278 66650592 + 0 NA Intergenic Intergenic -25393 ENSMUSG00000117186.1 ENSMUSG00000117186 ENSMUST00000233257 Gm46576 processed_pseudogene Interval_47731 chr13 91911367 91911733 + 0 NA intron (ENSMUSG00000021708.17, intron 6 of 14) protein_coding-intron (ENSMUSG00000021708.17, intron 25 of 33) -34665 ENSMUSG00000021622.3 ENSMUSG00000021622 ENSMUST00000022122 Ckmt2 protein_coding Interval_128048 chr5 110493732 110494302 + 0 NA Intergenic Intergenic -11816 ENSMUSG00000105603.1 ENSMUSG00000105603 ENSMUST00000199828 Gm32996 processed_pseudogene Interval_18027 chr10 81429396 81431861 + 0 NA intron (ENSMUSG00000055053.18, intron 1 of 9) protein_coding-intron (ENSMUSG00000055053.18, intron 1 of 9) -14331 ENSMUSG00000105379.1 ENSMUSG00000105379 ENSMUST00000199973 Mir1191b miRNA Interval_79963 chr18 36304487 36304687 + 0 NA Intergenic Intergenic 5908 ENSMUSG00000110185.2 ENSMUSG00000110185 ENSMUST00000210490 Igip protein_coding Interval_69503 chr16 93917937 93919991 + 0 NA TTS (ENSMUSG00000047109.13) protein_coding-TTS (ENSMUSG00000047109.13) 23420 ENSMUSG00000047109.13 ENSMUSG00000047109 ENSMUST00000232406 Cldn14 protein_coding Interval_159874 chr8 104550011 104550242 + 0 NA exon (ENSMUSG00000031883.13, exon 7 of 7) protein_coding-exon (ENSMUSG00000031883.13, exon 7 of 7) 6861 ENSMUSG00000110607.1 ENSMUSG00000110607 ENSMUST00000212317 Gm45843 lincRNA Interval_106381 chr3 95771730 95772894 + 0 NA TTS (ENSMUSG00000028106.13) protein_coding-TTS (ENSMUSG00000028106.13) 4446 ENSMUSG00000028106.13 ENSMUSG00000028106 ENSMUST00000198741 Rprd2 protein_coding Interval_135539 chr6 40214397 40214725 + 0 NA intron (ENSMUSG00000057716.7, intron 3 of 3) protein_coding-intron (ENSMUSG00000057716.7, intron 2 of 2) -5302 ENSMUSG00000097484.1 ENSMUSG00000097484 ENSMUST00000181132 Gm26807 antisense Interval_74875 chr17 57019539 57020083 + 0 NA intron (ENSMUSG00000109739.1, intron 4 of 5) protein_coding-intron (ENSMUSG00000109739.1, intron 4 of 5) 8342 ENSMUSG00000109739.1 ENSMUSG00000109739 ENSMUST00000210548 Gm17949 protein_coding Interval_110038 chr3 152705785 152705991 + 0 NA Intergenic Intergenic -8235 ENSMUSG00000039047.17 ENSMUSG00000039047 ENSMUST00000160651 Pigk protein_coding Interval_80318 chr18 39149045 39150236 + 0 NA intron (ENSMUSG00000036452.18, intron 10 of 22) protein_coding-intron (ENSMUSG00000036452.18, intron 10 of 22) -141795 ENSMUSG00000036452.18 ENSMUSG00000036452 ENSMUST00000133247 Arhgap26 protein_coding Interval_71514 chr17 24241474 24242178 + 0 NA promoter-TSS (ENSMUSG00000099123.1) miRNA-promoter-TSS (ENSMUSG00000099123.1) -879 ENSMUSG00000099123.1 ENSMUSG00000099123 ENSMUST00000184733 Mir6965 miRNA Interval_32968 chr11 113411937 113412825 + 0 NA intron (ENSMUSG00000041654.15, intron 5 of 5) protein_coding-intron (ENSMUSG00000041654.15, intron 6 of 10) -55596 ENSMUSG00000078251.2 ENSMUSG00000078251 ENSMUST00000105048 Gm16487 pseudogene Interval_104712 chr3 69657304 69658366 + 0 NA Intergenic Intergenic -3931 ENSMUSG00000102342.1 ENSMUSG00000102342 ENSMUST00000193752 Gm37380 processed_pseudogene Interval_2283 chr1 37650696 37651143 + 0 NA intron (ENSMUSG00000026090.16, intron 1 of 9) protein_coding-intron (ENSMUSG00000026090.16, intron 2 of 3) -9803 ENSMUSG00000104365.1 ENSMUSG00000104365 ENSMUST00000192005 4930470B04Rik TEC Interval_83411 chr18 84970285 84971259 + 0 NA intron (ENSMUSG00000034391.12, intron 8 of 9) protein_coding-intron (ENSMUSG00000034391.12, intron 8 of 9) -19248 ENSMUSG00000024645.5 ENSMUSG00000024645 ENSMUST00000235591 Timm21 protein_coding Interval_111210 chr4 14873043 14874561 + 0 NA intron (ENSMUSG00000028221.3, intron 1 of 6) protein_coding-intron (ENSMUSG00000028221.3, intron 1 of 6) 9726 ENSMUSG00000028221.3 ENSMUSG00000028221 ENSMUST00000029875 Pip4p2 protein_coding Interval_39345 chr12 86831497 86832910 + 0 NA Intergenic Intergenic 14264 ENSMUSG00000113555.1 ENSMUSG00000113555 ENSMUST00000222765 Gm10095 processed_pseudogene Interval_149015 chr7 91996933 91997159 + 0 NA intron (ENSMUSG00000052572.19, intron 7 of 19) protein_coding-intron (ENSMUSG00000052572.19, intron 9 of 22) -67547 ENSMUSG00000109191.1 ENSMUSG00000109191 ENSMUST00000208051 Gm45131 TEC Interval_72240 chr17 28761632 28762575 + 0 NA Intergenic Intergenic -7194 ENSMUSG00000004864.13 ENSMUSG00000004864 ENSMUST00000004986 Mapk13 protein_coding Interval_166486 chr9 59972285 59972459 + 0 NA exon (ENSMUSG00000032289.15, exon 12 of 12) protein_coding-exon (ENSMUSG00000032289.15, exon 12 of 12) -10601 ENSMUSG00000084847.7 ENSMUSG00000084847 ENSMUST00000133523 Gm15507 lincRNA Interval_113965 chr4 62012857 62013176 + 0 NA intron (ENSMUSG00000084309.1, intron 3 of 3) unprocessed_pseudogene-intron (ENSMUSG00000084309.1, intron 3 of 3) 1841 ENSMUSG00000084309.1 ENSMUSG00000084309 ENSMUST00000121132 Mup-ps20 unprocessed_pseudogene Interval_39875 chr12 99285185 99285842 + 0 NA intron (ENSMUSG00000033713.12, intron 1 of 3) protein_coding-intron (ENSMUSG00000033713.12, intron 4 of 5) 11107 ENSMUSG00000093465.1 ENSMUSG00000093465 ENSMUST00000176552 Gm20682 sense_intronic Interval_51497 chr14 28522399 28522853 + 0 NA exon (ENSMUSG00000021994.15, exon 5 of 5) protein_coding-exon (ENSMUSG00000021994.15, exon 5 of 5) -11234 ENSMUSG00000097002.1 ENSMUSG00000097002 ENSMUST00000180668 Gm2670 antisense Interval_102281 chr3 20419949 20420727 + 0 NA Intergenic Intergenic 15673 ENSMUSG00000106442.1 ENSMUSG00000106442 ENSMUST00000199511 Gm42594 TEC Interval_118864 chr4 134138799 134139343 + 0 NA exon (ENSMUSG00000037443.13, exon 1 of 4) protein_coding-exon (ENSMUSG00000037443.13, exon 1 of 4) -10334 ENSMUSG00000028843.8 ENSMUSG00000028843 ENSMUST00000136408 Sh3bgrl3 protein_coding Interval_73606 chr17 41070384 41071340 + 0 NA promoter-TSS (ENSMUSG00000117210.1) lincRNA-promoter-TSS (ENSMUSG00000117210.1) -261 ENSMUSG00000117210.1 ENSMUSG00000117210 ENSMUST00000233396 Gm49857 lincRNA Interval_129765 chr5 122190472 122192660 + 0 NA Intergenic Intergenic -18547 ENSMUSG00000064267.13 ENSMUSG00000064267 ENSMUST00000100747 Hvcn1 protein_coding Interval_65456 chr16 22426861 22427228 + 0 NA intron (ENSMUSG00000013089.15, intron 4 of 12) protein_coding-intron (ENSMUSG00000013089.15, intron 5 of 12) -25215 ENSMUSG00000013089.15 ENSMUSG00000013089 ENSMUST00000170393 Etv5 protein_coding Interval_127216 chr5 101445429 101445736 + 0 NA Intergenic Intergenic 60747 ENSMUSG00000106610.1 ENSMUSG00000106610 ENSMUST00000199021 Gm43103 processed_pseudogene Interval_12206 chr1 190833801 190834042 + 0 NA intron (ENSMUSG00000089872.10, intron 1 of 3) protein_coding-intron (ENSMUSG00000089872.10, intron 8 of 14) 65796 ENSMUSG00000089872.10 ENSMUSG00000089872 ENSMUST00000159066 Rps6kc1 protein_coding Interval_88846 chr2 11611992 11612648 + 0 NA Intergenic Intergenic -3624 ENSMUSG00000082727.2 ENSMUSG00000082727 ENSMUST00000117797 Gm13260 processed_pseudogene Interval_98925 chr2 156065119 156066761 + 0 NA promoter-TSS (ENSMUSG00000038180.11) protein_coding-promoter-TSS (ENSMUSG00000038180.11) -795 ENSMUSG00000038180.11 ENSMUSG00000038180 ENSMUST00000149139 Spag4 protein_coding Interval_39476 chr12 88202511 88203409 + 0 NA Intergenic Intergenic -17596 ENSMUSG00000114191.1 ENSMUSG00000114191 ENSMUST00000223125 Gm18631 processed_pseudogene Interval_20703 chr10 120384723 120386444 + 0 NA intron (ENSMUSG00000056758.14, intron 3 of 5) protein_coding-intron (ENSMUSG00000056758.14, intron 3 of 4) -3940 ENSMUSG00000090191.1 ENSMUSG00000090191 ENSMUST00000161291 9230105E05Rik antisense Interval_56193 chr14 111719312 111719926 + 0 NA Intergenic Intergenic 9021 ENSMUSG00000118534.1 ENSMUSG00000118534 ENSMUST00000238868 AC102368.1 processed_pseudogene Interval_38924 chr12 83855690 83855896 + 0 NA intron (ENSMUSG00000021224.15, intron 2 of 8) protein_coding-intron (ENSMUSG00000021224.15, intron 2 of 12) 7743 ENSMUSG00000113141.1 ENSMUSG00000113141 ENSMUST00000221017 Gm47748 processed_pseudogene Interval_164016 chr9 30932997 30933988 + 0 NA Intergenic Intergenic -9966 ENSMUSG00000031994.13 ENSMUSG00000031994 ENSMUST00000163037 Adamts8 protein_coding Interval_135296 chr6 38134948 38135162 + 0 NA intron (ENSMUSG00000063455.16, intron 18 of 19) protein_coding-intron (ENSMUSG00000063455.16, intron 18 of 19) 16672 ENSMUSG00000087924.1 ENSMUSG00000087924 ENSMUST00000157299 Gm23231 snRNA Interval_101327 chr2 180463724 180464686 + 0 NA exon (ENSMUSG00000038963.15, exon 2 of 12) protein_coding-exon (ENSMUSG00000038963.15, exon 2 of 12) 7871 ENSMUSG00000038963.15 ENSMUSG00000038963 ENSMUST00000128367 Slco4a1 protein_coding Interval_126246 chr5 83925593 83926011 + 0 NA Intergenic Intergenic 62639 ENSMUSG00000106576.1 ENSMUSG00000106576 ENSMUST00000197408 Gm4866 unprocessed_pseudogene Interval_23981 chr11 29165012 29165472 + 0 NA Intergenic Intergenic 8316 ENSMUSG00000086725.1 ENSMUSG00000086725 ENSMUST00000129876 A630052C17Rik processed_transcript Interval_41131 chr12 111366999 111367413 + 0 NA intron (ENSMUSG00000021279.5, intron 2 of 4) protein_coding-intron (ENSMUSG00000021279.5, intron 1 of 36) -39603 ENSMUSG00000087075.2 ENSMUSG00000087075 ENSMUST00000150384 Lbhd2 protein_coding Interval_174417 chrX 151937189 151937471 + 0 NA Intergenic Intergenic -8038 ENSMUSG00000082778.1 ENSMUSG00000082778 ENSMUST00000117933 Gm15191 processed_pseudogene Interval_39544 chr12 89818095 89818404 + 0 NA intron (ENSMUSG00000066392.12, intron 1 of 5) protein_coding-intron (ENSMUSG00000066392.12, intron 14 of 19) 5841 ENSMUSG00000066392.12 ENSMUSG00000066392 ENSMUST00000110130 Nrxn3 protein_coding Interval_169613 chr9 99444635 99445615 + 0 NA Intergenic Intergenic -6350 ENSMUSG00000046242.8 ENSMUSG00000046242 ENSMUST00000056103 Nme9 protein_coding Interval_22018 chr11 5809995 5810209 + 0 NA Intergenic Intergenic -6369 ENSMUSG00000020475.3 ENSMUSG00000020475 ENSMUST00000020768 Pgam2 protein_coding Interval_83210 chr18 82784478 82784852 + 0 NA Intergenic Intergenic -25624 ENSMUSG00000101773.1 ENSMUSG00000101773 ENSMUST00000188435 2210420H20Rik lincRNA Interval_102097 chr3 17238521 17239527 + 0 NA Intergenic Intergenic -8049 ENSMUSG00000095827.2 ENSMUSG00000095827 ENSMUST00000177874 Gm5283 processed_pseudogene Interval_36538 chr12 49010110 49010563 + 0 NA TTS (ENSMUSG00000064616.1) snRNA-TTS (ENSMUSG00000064616.1) 453 ENSMUSG00000064616.1 ENSMUSG00000064616 ENSMUST00000082682 Gm26454 snRNA Interval_47345 chr13 81710546 81712100 + 0 NA promoter-TSS (ENSMUSG00000035834.11) protein_coding-promoter-TSS (ENSMUSG00000035834.11) -207 ENSMUSG00000051098.6 ENSMUSG00000051098 ENSMUST00000224299 Mblac2 protein_coding Interval_118040 chr4 128563526 128564439 + 0 NA intron (ENSMUSG00000028804.20, intron 6 of 7) protein_coding-intron (ENSMUSG00000028804.20, intron 69 of 70) 11407 ENSMUSG00000028804.20 ENSMUSG00000028804 ENSMUST00000221199 Csmd2 protein_coding Interval_127433 chr5 103898088 103898608 + 0 NA promoter-TSS (ENSMUSG00000095133.1) snRNA-promoter-TSS (ENSMUSG00000095133.1) -531 ENSMUSG00000095133.1 ENSMUSG00000095133 ENSMUST00000179033 Gm24897 snRNA Interval_44021 chr13 39894230 39894605 + 0 NA Intergenic Intergenic -10036 ENSMUSG00000114957.1 ENSMUSG00000114957 ENSMUST00000224937 Gm47316 lincRNA Interval_74198 chr17 47067532 47067755 + 0 NA Intergenic Intergenic -24604 ENSMUSG00000062472.6 ENSMUSG00000062472 ENSMUST00000075152 Gm4945 processed_pseudogene Interval_135207 chr6 37530848 37531277 + 0 NA intron (ENSMUSG00000038641.12, intron 1 of 8) protein_coding-intron (ENSMUSG00000038641.12, intron 1 of 8) -8619 ENSMUSG00000038641.12 ENSMUSG00000038641 ENSMUST00000123648 Akr1d1 protein_coding Interval_125091 chr5 64380711 64381190 + 0 NA Intergenic Intergenic -2504 ENSMUSG00000105443.1 ENSMUSG00000105443 ENSMUST00000200306 Gm43837 lincRNA Interval_173146 chrX 73493539 73493812 + 0 NA TTS (ENSMUSG00000031375.17) protein_coding-TTS (ENSMUSG00000031375.17) -1217 ENSMUSG00000031375.17 ENSMUSG00000031375 ENSMUST00000183174 Bgn protein_coding Interval_40384 chr12 104546114 104547085 + 0 NA Intergenic Intergenic 26631 ENSMUSG00000112954.1 ENSMUSG00000112954 ENSMUST00000222329 Gm49732 lincRNA Interval_131896 chr5 140659510 140659783 + 0 NA Intergenic Intergenic -10649 ENSMUSG00000036565.7 ENSMUSG00000036565 ENSMUST00000200302 Ttyh3 protein_coding Interval_109355 chr3 139607841 139608765 + 0 NA intron (ENSMUSG00000047940.13, intron 12 of 13) protein_coding-intron (ENSMUSG00000047940.13, intron 12 of 13) -41076 ENSMUSG00000106574.1 ENSMUSG00000106574 ENSMUST00000199447 Gm2451 processed_pseudogene Interval_90591 chr2 31309442 31309874 + 0 NA Intergenic Intergenic -4757 ENSMUSG00000055632.18 ENSMUSG00000055632 ENSMUST00000141294 Hmcn2 protein_coding Interval_133315 chr5 151641860 151642206 + 0 NA TTS (ENSMUSG00000033970.15) protein_coding-TTS (ENSMUSG00000033970.15) 2729 ENSMUSG00000033970.15 ENSMUSG00000033970 ENSMUST00000136752 Rfc3 protein_coding Interval_1795 chr1 33826459 33826787 + 0 NA Intergenic Intergenic 12057 ENSMUSG00000081402.4 ENSMUSG00000081402 ENSMUST00000117459 Gm15455 processed_pseudogene Interval_115808 chr4 104769536 104769756 + 0 NA intron (ENSMUSG00000029656.13, intron 1 of 10) protein_coding-intron (ENSMUSG00000029656.13, intron 1 of 11) -29562 ENSMUSG00000029656.13 ENSMUSG00000029656 ENSMUST00000123892 C8b protein_coding Interval_34386 chr12 3780451 3782015 + 0 NA TTS (ENSMUSG00000071454.13) protein_coding-TTS (ENSMUSG00000071454.13) -19087 ENSMUSG00000092286.1 ENSMUSG00000092286 ENSMUST00000173847 Dtnbos antisense Interval_40500 chr12 105271824 105272250 + 0 NA Intergenic Intergenic -49341 ENSMUSG00000041359.14 ENSMUSG00000041359 ENSMUST00000176952 Tcl1 protein_coding Interval_8353 chr1 137789561 137790279 + 0 NA Intergenic Intergenic -21929 ENSMUSG00000104112.1 ENSMUSG00000104112 ENSMUST00000191658 Gm37293 TEC Interval_76676 chr17 83400072 83400497 + 0 NA intron (ENSMUSG00000032624.16, intron 1 of 22) protein_coding-intron (ENSMUSG00000032624.16, intron 1 of 20) -56017 ENSMUSG00000032624.16 ENSMUSG00000032624 ENSMUST00000235121 Eml4 protein_coding Interval_67814 chr16 57398273 57399609 + 0 NA intron (ENSMUSG00000043336.14, intron 1 of 4) protein_coding-intron (ENSMUSG00000043336.14, intron 1 of 4) 45848 ENSMUSG00000043336.14 ENSMUSG00000043336 ENSMUST00000159414 Filip1l protein_coding Interval_139712 chr6 107971652 107972318 + 0 NA Intergenic Intergenic 83304 ENSMUSG00000108009.1 ENSMUSG00000108009 ENSMUST00000205154 Gm44279 processed_pseudogene Interval_3039 chr1 52517019 52518273 + 0 NA Intergenic Intergenic -4593 ENSMUSG00000101501.1 ENSMUSG00000101501 ENSMUST00000191424 Rps27a-ps1 processed_pseudogene Interval_16968 chr10 70188791 70190267 + 0 NA exon (ENSMUSG00000048701.13, exon 9 of 9) protein_coding-exon (ENSMUSG00000048701.13, exon 9 of 9) 14518 ENSMUSG00000048701.13 ENSMUSG00000048701 ENSMUST00000135607 Ccdc6 protein_coding Interval_124175 chr5 38967731 38967999 + 0 NA Intergenic Intergenic 35166 ENSMUSG00000106924.1 ENSMUSG00000106924 ENSMUST00000200823 Gm42857 processed_pseudogene Interval_162066 chr8 124843646 124844600 + 0 NA intron (ENSMUSG00000031984.8, intron 2 of 6) protein_coding-intron (ENSMUSG00000031984.8, intron 2 of 6) 12425 ENSMUSG00000090118.1 ENSMUSG00000090118 ENSMUST00000161868 Gm16163 processed_transcript Interval_54785 chr14 75035279 75035714 + 0 NA exon (ENSMUSG00000034959.8, exon 3 of 14) protein_coding-exon (ENSMUSG00000034959.8, exon 3 of 14) -1126 ENSMUSG00000034959.8 ENSMUSG00000034959 ENSMUST00000228689 Rubcnl protein_coding Interval_68475 chr16 77702681 77703124 + 0 NA intron (ENSMUSG00000090386.10, intron 2 of 4) processed_transcript-intron (ENSMUSG00000090386.10, intron 2 of 4) 17625 ENSMUSG00000102562.1 ENSMUSG00000102562 ENSMUST00000191696 Gm37694 TEC Interval_124661 chr5 52926840 52927055 + 0 NA Intergenic Intergenic -7738 ENSMUSG00000105054.1 ENSMUSG00000105054 ENSMUST00000196038 Gm43664 processed_pseudogene Interval_96581 chr2 125893314 125893713 + 0 NA TTS (ENSMUSG00000027207.15) protein_coding-TTS (ENSMUSG00000027207.15) 27270 ENSMUSG00000027207.15 ENSMUSG00000027207 ENSMUST00000110454 Galk2 protein_coding Interval_76410 chr17 80000376 80000595 + 0 NA Intergenic Intergenic -18823 ENSMUSG00000117415.1 ENSMUSG00000117415 ENSMUST00000234800 Gm41625 lincRNA Interval_75330 chr17 65898997 65899442 + 0 NA Intergenic Intergenic 12799 ENSMUSG00000117250.1 ENSMUSG00000117250 ENSMUST00000233078 Gm49871 lincRNA Interval_66035 chr16 31080584 31081872 + 0 NA exon (ENSMUSG00000047434.14, exon 1 of 4) protein_coding-exon (ENSMUSG00000047434.14, exon 1 of 4) -11402 ENSMUSG00000047434.14 ENSMUSG00000047434 ENSMUST00000142870 Xxylt1 protein_coding Interval_159465 chr8 94888444 94889229 + 0 NA Intergenic Intergenic -17632 ENSMUSG00000040631.8 ENSMUSG00000040631 ENSMUST00000212745 Dok4 protein_coding Interval_11415 chr1 181826619 181826802 + 0 NA intron (ENSMUSG00000004880.11, intron 1 of 4) protein_coding-intron (ENSMUSG00000004880.11, intron 6 of 13) -13010 ENSMUSG00000064970.1 ENSMUSG00000064970 ENSMUST00000083036 Gm23690 snRNA Interval_81659 chr18 62953091 62953531 + 0 NA TTS (ENSMUSG00000071847.13) protein_coding-TTS (ENSMUSG00000071847.13) -24536 ENSMUSG00000024581.13 ENSMUSG00000024581 ENSMUST00000236914 Napg protein_coding Interval_91074 chr2 34825752 34826916 + 0 NA promoter-TSS (ENSMUSG00000035949.15) protein_coding-promoter-TSS (ENSMUSG00000035949.15) -127 ENSMUSG00000035949.15 ENSMUSG00000035949 ENSMUST00000126051 Fbxw2 protein_coding Interval_91050 chr2 34686070 34686747 + 0 NA intron (ENSMUSG00000026867.18, intron 15 of 18) protein_coding-intron (ENSMUSG00000026867.18, intron 22 of 25) 14691 ENSMUSG00000026867.18 ENSMUSG00000026867 ENSMUST00000142436 Gapvd1 protein_coding Interval_62760 chr15 96684297 96685059 + 0 NA Intergenic Intergenic 12885 ENSMUSG00000064928.1 ENSMUSG00000064928 ENSMUST00000082994 Gm22045 snRNA Interval_126460 chr5 88683639 88685952 + 0 NA Intergenic Intergenic -9125 ENSMUSG00000044221.14 ENSMUSG00000044221 ENSMUST00000137725 Grsf1 protein_coding Interval_130760 chr5 130218015 130219882 + 0 NA promoter-TSS (ENSMUSG00000053094.15) protein_coding-promoter-TSS (ENSMUSG00000053094.15) 1867 ENSMUSG00000053094.15 ENSMUSG00000053094 ENSMUST00000111298 Tmem248 protein_coding Interval_104906 chr3 78940490 78940700 + 0 NA Intergenic Intergenic 23337 ENSMUSG00000070443.6 ENSMUSG00000070443 ENSMUST00000094175 Gm10291 processed_pseudogene Interval_38459 chr12 79190795 79192231 + 0 NA promoter-TSS (ENSMUSG00000066441.14) protein_coding-promoter-TSS (ENSMUSG00000066441.14) 780 ENSMUSG00000066441.14 ENSMUSG00000066441 ENSMUST00000159500 Rdh11 protein_coding Interval_54511 chr14 70358230 70360081 + 0 NA Intergenic Intergenic -1032 ENSMUSG00000058745.4 ENSMUSG00000058745 ENSMUST00000078149 Gm9174 processed_pseudogene Interval_152674 chr7 136112205 136112472 + 0 NA Intergenic Intergenic 60958 ENSMUSG00000110396.1 ENSMUSG00000110396 ENSMUST00000209653 Gm36737 lincRNA Interval_162784 chr9 9077990 9078721 + 0 NA intron (ENSMUSG00000050730.17, intron 4 of 5) protein_coding-intron (ENSMUSG00000050730.17, intron 4 of 22) 106564 ENSMUSG00000078117.2 ENSMUSG00000078117 ENSMUST00000104915 Gm16485 TEC Interval_68399 chr16 75766238 75767762 + 0 NA promoter-TSS (ENSMUSG00000032932.15) protein_coding-promoter-TSS (ENSMUSG00000032932.15) 104 ENSMUSG00000032932.15 ENSMUSG00000032932 ENSMUST00000137806 Hspa13 protein_coding Interval_97602 chr2 140355830 140356166 + 0 NA intron (ENSMUSG00000074764.11, intron 1 of 19) protein_coding-intron (ENSMUSG00000074764.11, intron 1 of 3) -59170 ENSMUSG00000074764.11 ENSMUSG00000074764 ENSMUST00000120133 Sel1l2 protein_coding Interval_26046 chr11 53743930 53744718 + 0 NA Intergenic Intergenic 10745 ENSMUSG00000083986.1 ENSMUSG00000083986 ENSMUST00000119924 Gm12213 processed_pseudogene Interval_20472 chr10 117803867 117804844 + 0 NA Intergenic Intergenic -5590 ENSMUSG00000112525.1 ENSMUSG00000112525 ENSMUST00000219949 Gm47899 processed_pseudogene Interval_71872 chr17 26644589 26645072 + 0 NA TTS (ENSMUSG00000001576.15) protein_coding-TTS (ENSMUSG00000001576.15) -19730 ENSMUSG00000091078.1 ENSMUSG00000091078 ENSMUST00000165911 Gm17218 antisense Interval_72253 chr17 28829470 28829904 + 0 NA intron (ENSMUSG00000063952.16, intron 9 of 10) protein_coding-intron (ENSMUSG00000063952.16, intron 10 of 12) -6930 ENSMUSG00000117301.1 ENSMUSG00000117301 ENSMUST00000233498 Gm35883 antisense Interval_151469 chr7 122863080 122863397 + 0 NA Intergenic Intergenic 25275 ENSMUSG00000108529.1 ENSMUSG00000108529 ENSMUST00000205860 Gm29759 processed_pseudogene Interval_16926 chr10 69955673 69956574 + 0 NA exon (ENSMUSG00000069601.14, exon 3 of 17) protein_coding-exon (ENSMUSG00000069601.14, exon 3 of 17) -218888 ENSMUSG00000048701.13 ENSMUSG00000048701 ENSMUST00000135607 Ccdc6 protein_coding Interval_72445 chr17 29852483 29853294 + 0 NA intron (ENSMUSG00000043557.16, intron 2 of 16) protein_coding-intron (ENSMUSG00000043557.16, intron 2 of 15) -12907 ENSMUSG00000043557.16 ENSMUSG00000043557 ENSMUST00000167102 Mdga1 protein_coding Interval_10233 chr1 167369742 167370559 + 0 NA Intergenic Intergenic 19914 ENSMUSG00000026687.14 ENSMUSG00000026687 ENSMUST00000191715 Aldh9a1 protein_coding Interval_143420 chr7 6624116 6624364 + 0 NA Intergenic Intergenic 38128 ENSMUSG00000108113.2 ENSMUSG00000108113 ENSMUST00000203156 Zim2 processed_transcript Interval_119160 chr4 135908179 135908477 + 0 NA intron (ENSMUSG00000062585.11, intron 1 of 1) protein_coding-intron (ENSMUSG00000062585.11, intron 1 of 1) 12934 ENSMUSG00000062585.11 ENSMUSG00000062585 ENSMUST00000068830 Cnr2 protein_coding Interval_33104 chr11 114462767 114463740 + 0 NA Intergenic Intergenic -14393 ENSMUSG00000062391.3 ENSMUSG00000062391 ENSMUST00000141088 4932435O22Rik lincRNA Interval_67362 chr16 48021601 48022557 + 0 NA Intergenic Intergenic -50918 ENSMUSG00000067716.3 ENSMUSG00000067716 ENSMUST00000088296 Gm7275 processed_pseudogene Interval_43101 chr13 24001380 24002748 + 0 NA Intergenic Intergenic 20492 ENSMUSG00000021338.17 ENSMUSG00000021338 ENSMUST00000136517 Carmil1 protein_coding Interval_37854 chr12 72593893 72594333 + 0 NA intron (ENSMUSG00000109482.2, intron 4 of 5) protein_coding-intron (ENSMUSG00000109482.2, intron 4 of 5) -26662 ENSMUSG00000113143.1 ENSMUSG00000113143 ENSMUST00000222501 Ly6e-ps1 processed_pseudogene Interval_132249 chr5 143603588 143604623 + 0 NA Intergenic Intergenic -18396 ENSMUSG00000018001.18 ENSMUSG00000018001 ENSMUST00000110727 Cyth3 protein_coding Interval_93593 chr2 74703933 74706063 + 0 NA promoter-TSS (ENSMUSG00000027102.4) protein_coding-promoter-TSS (ENSMUSG00000027102.4) 383 ENSMUSG00000027102.4 ENSMUSG00000027102 ENSMUST00000074721 Hoxd8 protein_coding Interval_95628 chr2 113076516 113076718 + 0 NA intron (ENSMUSG00000057378.15, intron 1 of 103) protein_coding-intron (ENSMUSG00000057378.15, intron 1 of 102) -209115 ENSMUSG00000041255.2 ENSMUSG00000041255 ENSMUST00000040856 Tmco5b protein_coding Interval_48005 chr13 95040656 95041459 + 0 NA intron (ENSMUSG00000021684.17, intron 16 of 20) protein_coding-intron (ENSMUSG00000021684.17, intron 16 of 20) 16756 ENSMUSG00000113070.1 ENSMUSG00000113070 ENSMUST00000220923 Gm48420 antisense Interval_169616 chr9 99469277 99470454 + 0 NA promoter-TSS (ENSMUSG00000046242.8) protein_coding-promoter-TSS (ENSMUSG00000046242.8) 18390 ENSMUSG00000046242.8 ENSMUSG00000046242 ENSMUST00000056103 Nme9 protein_coding Interval_91642 chr2 45158097 45159287 + 0 NA intron (ENSMUSG00000100135.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000100135.1, intron 1 of 1) 1767 ENSMUSG00000100135.1 ENSMUSG00000100135 ENSMUST00000188811 Gm28643 lincRNA Interval_109234 chr3 138143293 138145124 + 0 NA promoter-TSS (ENSMUSG00000028158.14) protein_coding-promoter-TSS (ENSMUSG00000028158.14) 691 ENSMUSG00000004127.12 ENSMUSG00000004127 ENSMUST00000161141 Trmt10a protein_coding Interval_112048 chr4 33514119 33515553 + 0 NA Intergenic Intergenic -61947 ENSMUSG00000081206.1 ENSMUSG00000081206 ENSMUST00000118608 Gm11935 processed_pseudogene Interval_120247 chr4 144879837 144880142 + 0 NA Intergenic Intergenic -12838 ENSMUSG00000066026.14 ENSMUSG00000066026 ENSMUST00000133265 Dhrs3 protein_coding Interval_47016 chr13 74375260 74376014 + 0 NA intron (ENSMUSG00000069184.4, intron 3 of 4) protein_coding-intron (ENSMUSG00000069184.4, intron 1 of 2) 6562 ENSMUSG00000113315.1 ENSMUSG00000113315 ENSMUST00000223306 Gm8227 processed_pseudogene Interval_106724 chr3 100090193 100090554 + 0 NA intron (ENSMUSG00000027867.10, intron 36 of 48) protein_coding-intron (ENSMUSG00000027867.10, intron 36 of 48) -11729 ENSMUSG00000082763.1 ENSMUSG00000082763 ENSMUST00000119906 Tra2b-ps processed_pseudogene Interval_55769 chr14 99872369 99872570 + 0 NA exon (ENSMUSG00000072294.5, exon 8 of 8) protein_coding-exon (ENSMUSG00000072294.5, exon 8 of 8) 27922 ENSMUSG00000072294.5 ENSMUSG00000072294 ENSMUST00000226544 Klf12 protein_coding Interval_87800 chr19 55942790 55943569 + 0 NA Intergenic Intergenic -69350 ENSMUSG00000117833.1 ENSMUSG00000117833 ENSMUST00000236015 Gm50135 processed_pseudogene Interval_118419 chr4 131296279 131296528 + 0 NA Intergenic Intergenic 57126 ENSMUSG00000088041.1 ENSMUSG00000088041 ENSMUST00000157416 Gm25261 snoRNA Interval_137185 chr6 69389619 69390086 + 0 NA Intergenic Intergenic -2572 ENSMUSG00000105323.1 ENSMUSG00000105323 ENSMUST00000198690 Igkv13-62-1 IG_V_pseudogene Interval_174863 chrY 6168159 6168553 + 0 NA Intergenic Intergenic 33321 ENSMUSG00000100292.1 ENSMUSG00000100292 ENSMUST00000190102 Gm29198 lincRNA Interval_120123 chr4 141964556 141964766 + 0 NA exon (ENSMUSG00000051435.11, exon 8 of 32) protein_coding-exon (ENSMUSG00000051435.11, exon 8 of 32) -12118 ENSMUSG00000081079.1 ENSMUSG00000081079 ENSMUST00000119881 Gm13059 processed_pseudogene Interval_55756 chr14 99621664 99621912 + 0 NA Intergenic Intergenic -1772 ENSMUSG00000115550.1 ENSMUSG00000115550 ENSMUST00000226602 Gm49225 lincRNA Interval_113248 chr4 52085857 52088110 + 0 NA Intergenic Intergenic -9516 ENSMUSG00000082963.1 ENSMUSG00000082963 ENSMUST00000118591 Gm12465 processed_pseudogene Interval_3040 chr1 52521224 52521435 + 0 NA promoter-TSS (ENSMUSG00000101501.1) processed_pseudogene-promoter-TSS (ENSMUSG00000101501.1) -910 ENSMUSG00000101501.1 ENSMUSG00000101501 ENSMUST00000191424 Rps27a-ps1 processed_pseudogene Interval_99550 chr2 163091763 163092066 + 0 NA promoter-TSS (ENSMUSG00000096635.1) miRNA-promoter-TSS (ENSMUSG00000096635.1) -985 ENSMUSG00000096635.1 ENSMUSG00000096635 ENSMUST00000175050 Gm22174 miRNA Interval_14283 chr10 30370634 30371207 + 0 NA Intergenic Intergenic -1998 ENSMUSG00000111047.1 ENSMUSG00000111047 ENSMUST00000213206 Gm4780 transcribed_processed_pseudogene Interval_161480 chr8 120643375 120644321 + 0 NA promoter-TSS (ENSMUSG00000097500.1) antisense-promoter-TSS (ENSMUSG00000097500.1) -102 ENSMUSG00000097500.1 ENSMUSG00000097500 ENSMUST00000181474 Gm26537 antisense Interval_4996 chr1 83945650 83945912 + 0 NA Intergenic Intergenic 23863 ENSMUSG00000077736.1 ENSMUSG00000077736 ENSMUST00000104548 Gm24555 snoRNA Interval_8332 chr1 137405757 137406233 + 0 NA Intergenic Intergenic -38748 ENSMUSG00000088164.1 ENSMUSG00000088164 ENSMUST00000157539 Gm23534 snoRNA Interval_55042 chr14 77418387 77419067 + 0 NA intron (ENSMUSG00000022012.9, intron 3 of 6) protein_coding-intron (ENSMUSG00000022012.9, intron 4 of 18) 22249 ENSMUSG00000115244.1 ENSMUSG00000115244 ENSMUST00000226498 Gm49002 antisense Interval_155794 chr8 38261121 38261534 + 0 NA intron (ENSMUSG00000039539.13, intron 1 of 9) protein_coding-intron (ENSMUSG00000039539.13, intron 1 of 7) -9125 ENSMUSG00000065457.3 ENSMUSG00000065457 ENSMUST00000083523 Mir383 miRNA Interval_92332 chr2 58930346 58930561 + 0 NA intron (ENSMUSG00000036641.9, intron 11 of 14) protein_coding-intron (ENSMUSG00000036641.9, intron 11 of 14) 29254 ENSMUSG00000082989.1 ENSMUSG00000082989 ENSMUST00000120771 Gm13557 processed_pseudogene Interval_25017 chr11 43140430 43140710 + 0 NA Intergenic Intergenic -15101 ENSMUSG00000055415.8 ENSMUSG00000055415 ENSMUST00000238415 Atp10b protein_coding Interval_90152 chr2 28585237 28585440 + 0 NA Intergenic Intergenic -2071 ENSMUSG00000026816.14 ENSMUSG00000026816 ENSMUST00000150699 Gtf3c5 protein_coding Interval_18346 chr10 85088142 85088653 + 0 NA Intergenic Intergenic 14098 ENSMUSG00000050035.7 ENSMUSG00000050035 ENSMUST00000216889 Fhl4 protein_coding Interval_77070 chr17 86204324 86204553 + 0 NA intron (ENSMUSG00000045038.14, intron 1 of 14) protein_coding-intron (ENSMUSG00000045038.14, intron 2 of 15) 28863 ENSMUSG00000117546.1 ENSMUSG00000117546 ENSMUST00000234087 AC154542.1 TEC Interval_158606 chr8 84716459 84716678 + 0 NA intron (ENSMUSG00000001911.16, intron 8 of 9) protein_coding-intron (ENSMUSG00000001911.16, intron 7 of 8) -6439 ENSMUSG00000074203.4 ENSMUSG00000074203 ENSMUST00000098571 G430095P16Rik protein_coding Interval_46887 chr13 73159731 73160715 + 0 NA Intergenic Intergenic -73172 ENSMUSG00000113952.1 ENSMUSG00000113952 ENSMUST00000223231 Rpl31-ps2 processed_pseudogene Interval_133986 chr6 17359078 17359695 + 0 NA intron (ENSMUSG00000085264.1, intron 1 of 4) antisense-intron (ENSMUSG00000085264.1, intron 1 of 4) 11653 ENSMUSG00000100101.1 ENSMUSG00000100101 ENSMUST00000188215 Gm29591 lincRNA Interval_82063 chr18 67448540 67449769 + 0 NA promoter-TSS (ENSMUSG00000024527.10) protein_coding-promoter-TSS (ENSMUSG00000024527.10) -13188 ENSMUSG00000088753.1 ENSMUSG00000088753 ENSMUST00000158128 Gm24900 snoRNA Interval_100795 chr2 172560111 172560361 + 0 NA Intergenic Intergenic 9245 ENSMUSG00000028640.11 ENSMUSG00000028640 ENSMUST00000142633 Tfap2c protein_coding Interval_40858 chr12 108918931 108920272 + 0 NA intron (ENSMUSG00000040877.16, intron 1 of 2) protein_coding-intron (ENSMUSG00000040877.16, intron 3 of 7) 6869 ENSMUSG00000040877.16 ENSMUSG00000040877 ENSMUST00000221510 Wdr25 protein_coding Interval_29346 chr11 83357062 83357630 + 0 NA intron (ENSMUSG00000035152.14, intron 14 of 20) protein_coding-intron (ENSMUSG00000035152.14, intron 14 of 21) 9655 ENSMUSG00000077217.1 ENSMUSG00000077217 ENSMUST00000104029 Gm23951 snoRNA Interval_11664 chr1 184235527 184236174 + 0 NA Intergenic Intergenic -122479 ENSMUSG00000102682.5 ENSMUSG00000102682 ENSMUST00000194453 Gm37223 lincRNA Interval_155239 chr8 28546363 28547949 + 0 NA Intergenic Intergenic -17439 ENSMUSG00000109794.1 ENSMUSG00000109794 ENSMUST00000209671 Gm45571 lincRNA Interval_5094 chr1 84900195 84901026 + 0 NA TTS (ENSMUSG00000073633.9) protein_coding-TTS (ENSMUSG00000073633.9) 31459 ENSMUSG00000073633.9 ENSMUSG00000073633 ENSMUST00000151737 Fbxo36 protein_coding Interval_8142 chr1 136024071 136024553 + 0 NA intron (ENSMUSG00000026411.17, intron 3 of 5) protein_coding-intron (ENSMUSG00000026411.17, intron 3 of 5) 16162 ENSMUSG00000026411.17 ENSMUSG00000026411 ENSMUST00000140545 Tmem9 protein_coding Interval_76781 chr17 84003770 84004472 + 0 NA intron (ENSMUSG00000117431.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000117431.1, intron 1 of 1) -4773 ENSMUSG00000117431.1 ENSMUSG00000117431 ENSMUST00000235072 8430430B14Rik lincRNA Interval_135862 chr6 47987585 47987805 + 0 NA Intergenic Intergenic -9819 ENSMUSG00000107824.1 ENSMUSG00000107824 ENSMUST00000203599 Gm6443 processed_pseudogene Interval_164981 chr9 43599984 43600490 + 0 NA Intergenic Intergenic -7947 ENSMUSG00000110988.1 ENSMUSG00000110988 ENSMUST00000214500 Gm29909 lincRNA Interval_17209 chr10 75002362 75003252 + 0 NA intron (ENSMUSG00000040009.6, intron 1 of 1) protein_coding-intron (ENSMUSG00000009070.14, intron 4 of 6) 29746 ENSMUSG00000009070.14 ENSMUSG00000009070 ENSMUST00000159761 Rsph14 protein_coding Interval_57651 chr15 13277220 13277427 + 0 NA Intergenic Intergenic -103648 ENSMUSG00000039385.5 ENSMUSG00000039385 ENSMUST00000226917 Cdh6 protein_coding Interval_154358 chr8 14965710 14965897 + 0 NA intron (ENSMUSG00000071176.10, intron 9 of 18) protein_coding-intron (ENSMUSG00000071176.10, intron 18 of 28) -4217 ENSMUSG00000090024.1 ENSMUSG00000090024 ENSMUST00000162958 Gm16350 antisense Interval_1592 chr1 28611419 28611789 + 0 NA Intergenic Intergenic -30832 ENSMUSG00000086240.4 ENSMUSG00000086240 ENSMUST00000145844 Gm7846 processed_pseudogene Interval_143656 chr7 14030711 14031551 + 0 NA Intergenic Intergenic 24473 ENSMUSG00000099744.1 ENSMUSG00000099744 ENSMUST00000186718 Tmem167-ps3 processed_pseudogene Interval_138883 chr6 92908788 92909636 + 0 NA intron (ENSMUSG00000030022.14, intron 6 of 39) protein_coding-intron (ENSMUSG00000030022.14, intron 6 of 39) -31366 ENSMUSG00000097462.7 ENSMUSG00000097462 ENSMUST00000204609 9530026P05Rik antisense Interval_37056 chr12 57178938 57180235 + 0 NA intron (ENSMUSG00000035472.14, intron 1 of 9) protein_coding-intron (ENSMUSG00000035472.14, intron 1 of 9) -18943 ENSMUSG00000035472.14 ENSMUSG00000035472 ENSMUST00000160892 Slc25a21 protein_coding Interval_153508 chr7 145289225 145289995 + 0 NA Intergenic Intergenic -5688 ENSMUSG00000048677.9 ENSMUSG00000048677 ENSMUST00000209156 Tpcn2 protein_coding Interval_167226 chr9 66295777 66295964 + 0 NA Intergenic Intergenic -54580 ENSMUSG00000038664.16 ENSMUSG00000038664 ENSMUST00000130854 Herc1 protein_coding Interval_35781 chr12 29367888 29369115 + 0 NA Intergenic Intergenic -50933 ENSMUSG00000112776.1 ENSMUSG00000112776 ENSMUST00000218409 Gm6989 processed_pseudogene Interval_59119 chr15 44350185 44351561 + 0 NA Intergenic Intergenic 5223 ENSMUSG00000088756.1 ENSMUSG00000088756 ENSMUST00000158131 Gm24903 snoRNA Interval_5663 chr1 90631805 90632574 + 0 NA Intergenic Intergenic 28713 ENSMUSG00000034432.11 ENSMUSG00000034432 ENSMUST00000186882 Cops8 protein_coding Interval_105487 chr3 86960891 86961190 + 0 NA Intergenic Intergenic -25511 ENSMUSG00000041750.13 ENSMUSG00000041750 ENSMUST00000041920 Cd1d2 polymorphic_pseudogene Interval_59921 chr15 61984444 61988104 + 0 NA promoter-TSS (ENSMUSG00000022346.16) protein_coding-promoter-TSS (ENSMUSG00000022346.16) 352 ENSMUSG00000022346.16 ENSMUSG00000022346 ENSMUST00000160009 Myc protein_coding Interval_65402 chr16 22152116 22153203 + 0 NA intron (ENSMUSG00000033581.17, intron 2 of 3) protein_coding-intron (ENSMUSG00000033581.17, intron 2 of 15) -31423 ENSMUSG00000033581.17 ENSMUSG00000033581 ENSMUST00000127696 Igf2bp2 protein_coding Interval_141035 chr6 124508527 124509160 + 0 NA exon (ENSMUSG00000038527.9, exon 6 of 6) protein_coding-exon (ENSMUSG00000038527.9, exon 6 of 6) -3562 ENSMUSG00000055172.10 ENSMUSG00000055172 ENSMUST00000068593 C1ra protein_coding Interval_54575 chr14 70756963 70757568 + 0 NA intron (ENSMUSG00000022100.14, intron 1 of 21) protein_coding-intron (ENSMUSG00000022100.14, intron 1 of 27) -18614 ENSMUSG00000022102.13 ENSMUSG00000022102 ENSMUST00000164691 Dok2 protein_coding Interval_135020 chr6 34716063 34716236 + 0 NA intron (ENSMUSG00000029761.16, intron 1 of 12) protein_coding-intron (ENSMUSG00000029761.16, intron 1 of 12) 10757 ENSMUSG00000060411.3 ENSMUSG00000060411 ENSMUST00000075773 Npn2 antisense Interval_42208 chr13 9921556 9921898 + 0 NA intron (ENSMUSG00000046159.16, intron 4 of 4) protein_coding-intron (ENSMUSG00000046159.16, intron 4 of 4) 28817 ENSMUSG00000113146.1 ENSMUSG00000113146 ENSMUST00000221304 Gm47406 processed_pseudogene Interval_118218 chr4 129580146 129580804 + 0 NA Intergenic Intergenic -3018 ENSMUSG00000050493.8 ENSMUSG00000050493 ENSMUST00000052835 Fam167b protein_coding Interval_16491 chr10 63171597 63172094 + 0 NA intron (ENSMUSG00000020067.8, intron 2 of 19) protein_coding-intron (ENSMUSG00000020067.8, intron 2 of 19) -49161 ENSMUSG00000020067.8 ENSMUSG00000020067 ENSMUST00000218978 Mypn protein_coding Interval_128736 chr5 114998827 114999534 + 0 NA Intergenic Intergenic 23724 ENSMUSG00000106838.1 ENSMUSG00000106838 ENSMUST00000202592 1810017P11Rik TEC Interval_379 chr1 4769971 4771455 + 0 NA promoter-TSS (ENSMUSG00000103922.1) processed_pseudogene-promoter-TSS (ENSMUSG00000103922.1) -418 ENSMUSG00000103922.1 ENSMUSG00000103922 ENSMUST00000193658 Gm6123 processed_pseudogene Interval_159398 chr8 94314001 94314197 + 0 NA intron (ENSMUSG00000032939.14, intron 22 of 22) protein_coding-intron (ENSMUSG00000032939.14, intron 21 of 21) -8059 ENSMUSG00000110710.1 ENSMUSG00000110710 ENSMUST00000212800 C78859 lincRNA Interval_127418 chr5 103806747 103808227 + 0 NA intron (ENSMUSG00000029313.18, intron 3 of 12) protein_coding-intron (ENSMUSG00000029313.18, intron 3 of 19) 52923 ENSMUSG00000029313.18 ENSMUSG00000029313 ENSMUST00000152145 Aff1 protein_coding Interval_82813 chr18 77165766 77166246 + 0 NA Intergenic Intergenic 20357 ENSMUSG00000073532.3 ENSMUSG00000073532 ENSMUST00000097520 Gm7276 bidirectional_promoter_lncRNA Interval_47613 chr13 90099219 90099583 + 0 NA TTS (ENSMUSG00000088308.1) snoRNA-TTS (ENSMUSG00000088308.1) 420 ENSMUSG00000088308.1 ENSMUSG00000088308 ENSMUST00000157683 Gm24507 snoRNA Interval_4226 chr1 71772345 71773282 + 0 NA Intergenic Intergenic -57889 ENSMUSG00000100319.1 ENSMUSG00000100319 ENSMUST00000191412 Gm5256 processed_pseudogene Interval_93210 chr2 71177540 71178361 + 0 NA Intergenic Intergenic -34054 ENSMUSG00000027012.15 ENSMUSG00000027012 ENSMUST00000138613 Dync1i2 protein_coding Interval_164094 chr9 31438014 31442054 + 0 NA promoter-TSS (ENSMUSG00000111468.1) TEC-promoter-TSS (ENSMUSG00000111468.1) -267 ENSMUSG00000111468.1 ENSMUSG00000111468 ENSMUST00000213948 5033425B01Rik TEC Interval_56481 chr14 119051725 119052032 + 0 NA intron (ENSMUSG00000042104.18, intron 16 of 38) protein_coding-intron (ENSMUSG00000042104.18, intron 3 of 17) -15839 ENSMUSG00000042104.18 ENSMUSG00000042104 ENSMUST00000136924 Uggt2 protein_coding Interval_112497 chr4 41627991 41628950 + 0 NA intron (ENSMUSG00000061322.15, intron 13 of 19) protein_coding-intron (ENSMUSG00000061322.15, intron 13 of 19) -3174 ENSMUSG00000061322.15 ENSMUSG00000061322 ENSMUST00000119127 Dnaic1 protein_coding Interval_23507 chr11 23020118 23020888 + 0 NA promoter-TSS (ENSMUSG00000049811.17) protein_coding-promoter-TSS (ENSMUSG00000049811.17) 7116 ENSMUSG00000049811.17 ENSMUSG00000049811 ENSMUST00000151877 Fam161a protein_coding Interval_37396 chr12 66560401 66560864 + 0 NA TTS (ENSMUSG00000088019.1) snoRNA-TTS (ENSMUSG00000088019.1) 740 ENSMUSG00000088019.1 ENSMUSG00000088019 ENSMUST00000157394 Gm23826 snoRNA Interval_72699 chr17 31620893 31621556 + 0 NA TTS (ENSMUSG00000024039.15) protein_coding-TTS (ENSMUSG00000024039.15) 11940 ENSMUSG00000024039.15 ENSMUSG00000024039 ENSMUST00000236909 Cbs protein_coding Interval_123602 chr5 33707378 33707928 + 0 NA Intergenic Intergenic 16016 ENSMUSG00000106896.1 ENSMUSG00000106896 ENSMUST00000202923 G630022F23Rik TEC Interval_167528 chr9 70257119 70258323 + 0 NA intron (ENSMUSG00000032220.10, intron 1 of 17) protein_coding-intron (ENSMUSG00000032220.10, intron 1 of 27) 50371 ENSMUSG00000032220.10 ENSMUSG00000032220 ENSMUST00000034745 Myo1e protein_coding Interval_108555 chr3 128697003 128698348 + 0 NA intron (ENSMUSG00000106245.1, intron 2 of 4) lincRNA-intron (ENSMUSG00000106245.1, intron 2 of 4) 3875 ENSMUSG00000105527.1 ENSMUSG00000105527 ENSMUST00000200511 4933424H11Rik lincRNA Interval_147803 chr7 73646529 73646997 + 0 NA promoter-TSS (ENSMUSG00000065729.1) snRNA-promoter-TSS (ENSMUSG00000065729.1) -674 ENSMUSG00000065729.1 ENSMUSG00000065729 ENSMUST00000083795 Gm26176 snRNA Interval_114920 chr4 86942921 86943972 + 0 NA Intergenic Intergenic 12755 ENSMUSG00000038007.14 ENSMUSG00000038007 ENSMUST00000135874 Acer2 protein_coding Interval_39293 chr12 86501496 86502457 + 0 NA intron (ENSMUSG00000021255.17, intron 2 of 5) protein_coding-intron (ENSMUSG00000021255.17, intron 3 of 6) 31859 ENSMUSG00000021255.17 ENSMUSG00000021255 ENSMUST00000136464 Esrrb protein_coding Interval_122524 chr5 23596465 23597158 + 0 NA intron (ENSMUSG00000062604.11, intron 2 of 5) protein_coding-intron (ENSMUSG00000062604.11, intron 1 of 14) -54693 ENSMUSG00000062604.11 ENSMUSG00000062604 ENSMUST00000196592 Srpk2 protein_coding Interval_115402 chr4 98669946 98671253 + 0 NA intron (ENSMUSG00000061859.17, intron 35 of 44) protein_coding-intron (ENSMUSG00000061859.17, intron 9 of 15) 6233 ENSMUSG00000081046.1 ENSMUSG00000081046 ENSMUST00000120431 Gm12846 processed_pseudogene Interval_27012 chr11 62366848 62368510 + 0 NA intron (ENSMUSG00000018501.17, intron 1 of 5) protein_coding-intron (ENSMUSG00000018501.17, intron 21 of 45) 15675 ENSMUSG00000018501.17 ENSMUSG00000018501 ENSMUST00000141447 Ncor1 protein_coding Interval_44050 chr13 40522374 40523618 + 0 NA Intergenic Intergenic -10574 ENSMUSG00000114215.1 ENSMUSG00000114215 ENSMUST00000223887 Gm47038 processed_pseudogene Interval_119545 chr4 138293556 138293920 + 0 NA exon (ENSMUSG00000028758.12, exon 12 of 15) protein_coding-exon (ENSMUSG00000028758.12, exon 12 of 15) -10992 ENSMUSG00000028757.4 ENSMUSG00000028757 ENSMUST00000030538 Ddost protein_coding Interval_106451 chr3 96424022 96424730 + 0 NA Intergenic Intergenic 1643 ENSMUSG00000095513.1 ENSMUSG00000095513 ENSMUST00000083374 Gm24136 snRNA Interval_99467 chr2 161662129 161662369 + 0 NA intron (ENSMUSG00000053141.16, intron 14 of 29) protein_coding-intron (ENSMUSG00000053141.16, intron 14 of 30) 137906 ENSMUSG00000053141.16 ENSMUSG00000053141 ENSMUST00000129015 Ptprt protein_coding Interval_170208 chr9 106202657 106203727 + 0 NA promoter-TSS (ENSMUSG00000023277.13) protein_coding-promoter-TSS (ENSMUSG00000023277.13) -5394 ENSMUSG00000020253.15 ENSMUSG00000020253 ENSMUST00000152359 Ppm1m protein_coding Interval_146159 chr7 44427803 44429986 + 0 NA promoter-TSS (ENSMUSG00000047085.14) protein_coding-promoter-TSS (ENSMUSG00000047085.14) -13843 ENSMUSG00000047085.14 ENSMUSG00000047085 ENSMUST00000156093 Lrrc4b protein_coding Interval_112258 chr4 38971677 38971874 + 0 NA Intergenic Intergenic -116292 ENSMUSG00000085632.1 ENSMUSG00000085632 ENSMUST00000126314 Gm12381 lincRNA Interval_116696 chr4 116701030 116701435 + 0 NA TTS (ENSMUSG00000028691.12) protein_coding-TTS (ENSMUSG00000028691.12) 7056 ENSMUSG00000028690.4 ENSMUSG00000028690 ENSMUST00000143330 Mmachc protein_coding Interval_147981 chr7 76186935 76187290 + 0 NA Intergenic Intergenic -42775 ENSMUSG00000025754.11 ENSMUSG00000025754 ENSMUST00000107442 Agbl1 protein_coding Interval_62584 chr15 94899902 94900153 + 0 NA intron (ENSMUSG00000063296.5, intron 4 of 7) protein_coding-intron (ENSMUSG00000063296.5, intron 4 of 7) 87111 ENSMUSG00000077447.1 ENSMUSG00000077447 ENSMUST00000104259 Gm23129 snoRNA Interval_18870 chr10 91547539 91548753 + 0 NA Intergenic Intergenic 92744 ENSMUSG00000111782.1 ENSMUSG00000111782 ENSMUST00000216093 Gm47091 processed_pseudogene Interval_167479 chr9 69758486 69761439 + 0 NA exon (ENSMUSG00000059246.4, exon 2 of 2) protein_coding-exon (ENSMUSG00000059246.4, exon 2 of 2) 978 ENSMUSG00000059246.4 ENSMUSG00000059246 ENSMUST00000071281 Foxb1 protein_coding Interval_86361 chr19 38969730 38970153 + 0 NA exon (ENSMUSG00000025001.11, exon 22 of 22) protein_coding-exon (ENSMUSG00000025001.11, exon 22 of 22) -6706 ENSMUSG00000114610.1 ENSMUSG00000114610 ENSMUST00000225458 Cyp2c52-ps unprocessed_pseudogene Interval_43157 chr13 24761024 24762382 + 0 NA promoter-TSS (ENSMUSG00000006715.11) protein_coding-promoter-TSS (ENSMUSG00000006715.11) 194 ENSMUSG00000006715.11 ENSMUSG00000006715 ENSMUST00000177253 Gmnn protein_coding Interval_84063 chr19 7018323 7018732 + 0 NA exon (ENSMUSG00000024965.9, exon 1 of 1) protein_coding-exon (ENSMUSG00000024965.9, exon 1 of 1) 818 ENSMUSG00000024965.9 ENSMUSG00000024965 ENSMUST00000238171 Fermt3 protein_coding Interval_137686 chr6 79379802 79380101 + 0 NA Intergenic Intergenic -161257 ENSMUSG00000107618.1 ENSMUSG00000107618 ENSMUST00000204707 Gm6261 processed_pseudogene Interval_91562 chr2 43367230 43367578 + 0 NA Intergenic Intergenic 151994 ENSMUSG00000080994.2 ENSMUSG00000080994 ENSMUST00000119418 Gm13464 processed_pseudogene Interval_25438 chr11 48546429 48546748 + 0 NA Intergenic Intergenic 5936 ENSMUSG00000083954.1 ENSMUSG00000083954 ENSMUST00000118344 Gm12179 processed_pseudogene Interval_174297 chrX 144268364 144269633 + 0 NA promoter-TSS (ENSMUSG00000081897.1) processed_pseudogene-promoter-TSS (ENSMUSG00000081897.1) -794 ENSMUSG00000081897.1 ENSMUSG00000081897 ENSMUST00000119534 Gm15067 processed_pseudogene Interval_157481 chr8 70637256 70639542 + 0 NA Intergenic Intergenic -5943 ENSMUSG00000038508.7 ENSMUSG00000038508 ENSMUST00000110103 Gdf15 protein_coding Interval_56999 chr15 3919953 3921294 + 0 NA Intergenic Intergenic -9362 ENSMUSG00000115843.1 ENSMUSG00000115843 ENSMUST00000227989 Gm17873 processed_pseudogene Interval_134117 chr6 20710815 20711384 + 0 NA Intergenic Intergenic 259891 ENSMUSG00000106763.1 ENSMUSG00000106763 ENSMUST00000201133 Gm19102 processed_pseudogene Interval_164159 chr9 32046477 32047080 + 0 NA Intergenic Intergenic -1920 ENSMUSG00000110845.1 ENSMUSG00000110845 ENSMUST00000216731 Gm47481 processed_pseudogene Interval_43863 chr13 37686048 37686679 + 0 NA promoter-TSS (ENSMUSG00000114546.1) lincRNA-promoter-TSS (ENSMUSG00000114546.1) 62 ENSMUSG00000114546.1 ENSMUSG00000114546 ENSMUST00000224246 Gm49350 lincRNA Interval_140115 chr6 114347916 114348337 + 0 NA Intergenic Intergenic -55540 ENSMUSG00000053004.9 ENSMUSG00000053004 ENSMUST00000160780 Hrh1 protein_coding Interval_119098 chr4 135544940 135546162 + 0 NA intron (ENSMUSG00000037188.7, intron 15 of 15) protein_coding-intron (ENSMUSG00000037188.7, intron 15 of 15) 28079 ENSMUSG00000037188.7 ENSMUSG00000037188 ENSMUST00000105855 Grhl3 protein_coding Interval_151594 chr7 124664324 124664533 + 0 NA intron (ENSMUSG00000086254.1, intron 1 of 3) lincRNA-intron (ENSMUSG00000086254.1, intron 1 of 3) 44507 ENSMUSG00000086254.1 ENSMUSG00000086254 ENSMUST00000130240 3100003L05Rik lincRNA Interval_73500 chr17 38124032 38124453 + 0 NA Intergenic Intergenic 10284 ENSMUSG00000067186.2 ENSMUSG00000067186 ENSMUST00000087128 Olfr132 protein_coding Interval_107404 chr3 107324651 107325990 + 0 NA TTS (ENSMUSG00000048109.10) protein_coding-TTS (ENSMUSG00000048109.10) 7781 ENSMUSG00000048109.10 ENSMUSG00000048109 ENSMUST00000197769 Rbm15 protein_coding Interval_59023 chr15 41795698 41796081 + 0 NA intron (ENSMUSG00000022307.16, intron 1 of 13) protein_coding-intron (ENSMUSG00000022307.16, intron 1 of 14) -6978 ENSMUSG00000097232.1 ENSMUSG00000097232 ENSMUST00000180418 Gm26854 antisense Interval_106318 chr3 95324722 95325201 + 0 NA intron (ENSMUSG00000015697.14, intron 18 of 20) protein_coding-intron (ENSMUSG00000015697.14, intron 19 of 21) 7611 ENSMUSG00000015714.11 ENSMUSG00000015714 ENSMUST00000142398 Cers2 protein_coding Interval_51203 chr14 24925908 24927827 + 0 NA Intergenic Intergenic 17453 ENSMUSG00000072686.2 ENSMUSG00000072686 ENSMUST00000100826 Gm10398 lincRNA Interval_154186 chr8 13280522 13280878 + 0 NA intron (ENSMUSG00000038506.13, intron 2 of 6) protein_coding-intron (ENSMUSG00000038506.13, intron 2 of 6) 892 ENSMUSG00000038506.13 ENSMUSG00000038506 ENSMUST00000204840 Dcun1d2 protein_coding Interval_81602 chr18 61999247 62001179 + 0 NA intron (ENSMUSG00000045629.8, intron 5 of 9) protein_coding-intron (ENSMUSG00000045629.8, intron 12 of 16) 22254 ENSMUSG00000045629.8 ENSMUSG00000045629 ENSMUST00000236759 Sh3tc2 protein_coding Interval_55646 chr14 97607734 97608073 + 0 NA Intergenic Intergenic 58388 ENSMUSG00000115598.1 ENSMUSG00000115598 ENSMUST00000227015 Gm9290 processed_pseudogene Interval_25965 chr11 53211283 53211547 + 0 NA Intergenic Intergenic 10731 ENSMUSG00000058073.4 ENSMUSG00000058073 ENSMUST00000117979 Gm11189 processed_pseudogene Interval_93964 chr2 80211866 80212067 + 0 NA Intergenic Intergenic 80036 ENSMUSG00000083519.1 ENSMUSG00000083519 ENSMUST00000121276 Gm13674 processed_pseudogene Interval_101306 chr2 180275877 180276240 + 0 NA Intergenic Intergenic 13821 ENSMUSG00000038980.1 ENSMUSG00000038980 ENSMUST00000038529 Rbbp8nl protein_coding Interval_158611 chr8 84749371 84752009 + 0 NA intron (ENSMUSG00000001911.16, intron 2 of 9) protein_coding-intron (ENSMUSG00000001911.16, intron 2 of 8) 27683 ENSMUSG00000074203.4 ENSMUSG00000074203 ENSMUST00000098571 G430095P16Rik protein_coding Interval_172372 chrX 14585107 14585899 + 0 NA Intergenic Intergenic -211232 ENSMUSG00000084907.1 ENSMUSG00000084907 ENSMUST00000145383 Gm14505 lincRNA Interval_124631 chr5 52582314 52582855 + 0 NA exon (ENSMUSG00000095078.2, exon 1 of 1) processed_pseudogene-exon (ENSMUSG00000095078.2, exon 1 of 1) 510 ENSMUSG00000095078.2 ENSMUSG00000095078 ENSMUST00000177881 Gm5866 processed_pseudogene Interval_29769 chr11 86690203 86690860 + 0 NA exon (ENSMUSG00000072582.9, exon 3 of 3) protein_coding-exon (ENSMUSG00000072582.9, exon 3 of 3) 6546 ENSMUSG00000072582.9 ENSMUSG00000072582 ENSMUST00000108021 Ptrh2 protein_coding Interval_144634 chr7 27264735 27264966 + 0 NA TTS (ENSMUSG00000063160.12) protein_coding-TTS (ENSMUSG00000063160.12) 6044 ENSMUSG00000063160.12 ENSMUSG00000063160 ENSMUST00000134215 Numbl protein_coding Interval_153515 chr7 145335239 145335519 + 0 NA Intergenic Intergenic 20544 ENSMUSG00000051207.7 ENSMUSG00000051207 ENSMUST00000062163 Mrgprd protein_coding Interval_111233 chr4 15319732 15320161 + 0 NA Intergenic Intergenic 54115 ENSMUSG00000043252.8 ENSMUSG00000043252 ENSMUST00000062684 Tmem64 protein_coding Interval_45007 chr13 51392076 51393148 + 0 NA intron (ENSMUSG00000112959.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000112959.1, intron 1 of 1) -16027 ENSMUSG00000067586.4 ENSMUSG00000067586 ENSMUST00000087978 S1pr3 protein_coding Interval_53673 chr14 60784291 60785190 + 0 NA promoter-TSS (ENSMUSG00000084951.1) antisense-promoter-TSS (ENSMUSG00000084951.1) 158 ENSMUSG00000021993.10 ENSMUSG00000021993 ENSMUST00000223709 Mipep protein_coding Interval_172009 chr9 123477846 123479923 + 0 NA exon (ENSMUSG00000025239.3, exon 1 of 8) protein_coding-exon (ENSMUSG00000025239.3, exon 1 of 8) -1726 ENSMUSG00000025239.3 ENSMUSG00000025239 ENSMUST00000214309 Limd1 protein_coding Interval_124925 chr5 60900233 60900667 + 0 NA Intergenic Intergenic 45199 ENSMUSG00000105903.1 ENSMUSG00000105903 ENSMUST00000199566 1700014F14Rik lincRNA Interval_35323 chr12 20624029 20625716 + 0 NA intron (ENSMUSG00000113157.2, intron 1 of 1) lincRNA-intron (ENSMUSG00000116883.1, intron 1 of 4) 9529 ENSMUSG00000116883.1 ENSMUSG00000116883 ENSMUST00000222348 Gm49700 lincRNA Interval_125540 chr5 69530552 69532418 + 0 NA intron (ENSMUSG00000029158.9, intron 1 of 3) protein_coding-intron (ENSMUSG00000029158.9, intron 2 of 5) 11104 ENSMUSG00000029158.9 ENSMUSG00000029158 ENSMUST00000202423 Yipf7 protein_coding Interval_136344 chr6 53529897 53530114 + 0 NA intron (ENSMUSG00000053007.9, intron 4 of 5) protein_coding-intron (ENSMUSG00000053007.9, intron 5 of 10) 96031 ENSMUSG00000096147.1 ENSMUSG00000096147 ENSMUST00000083282 Gm25818 snRNA Interval_73474 chr17 37755424 37755898 + 0 NA Intergenic Intergenic 6806 ENSMUSG00000060017.8 ENSMUSG00000060017 ENSMUST00000174675 Olfr121 protein_coding Interval_170443 chr9 108015652 108015921 + 0 NA intron (ENSMUSG00000102540.1, intron 1 of 1) protein_coding-intron (ENSMUSG00000032594.11, intron 1 of 5) 822 ENSMUSG00000102540.1 ENSMUSG00000102540 ENSMUST00000191858 Gm38134 antisense Interval_1270 chr1 18793586 18795198 + 0 NA Intergenic Intergenic 85964 ENSMUSG00000101306.1 ENSMUSG00000101306 ENSMUST00000189030 Gm5252 processed_pseudogene Interval_87936 chr19 57204322 57204652 + 0 NA intron (ENSMUSG00000025085.16, intron 1 of 20) protein_coding-intron (ENSMUSG00000025085.16, intron 1 of 25) -69473 ENSMUSG00000117684.1 ENSMUSG00000117684 ENSMUST00000237596 4930449E18Rik antisense Interval_68672 chr16 84468911 84469871 + 0 NA Intergenic Intergenic 44797 ENSMUSG00000116991.1 ENSMUSG00000116991 ENSMUST00000231489 Gm6032 processed_pseudogene Interval_85353 chr19 25127012 25128279 + 0 NA exon (ENSMUSG00000052085.7, exon 20 of 48) protein_coding-exon (ENSMUSG00000052085.7, exon 20 of 48) 38571 ENSMUSG00000065634.1 ENSMUSG00000065634 ENSMUST00000083700 Gm24252 snoRNA Interval_157905 chr8 75448632 75449257 + 0 NA promoter-TSS (ENSMUSG00000031620.16) protein_coding-promoter-TSS (ENSMUSG00000031620.16) 153 ENSMUSG00000031620.16 ENSMUSG00000031620 ENSMUST00000121983 Iqcm protein_coding Interval_53446 chr14 57567992 57568255 + 0 NA intron (ENSMUSG00000021951.7, intron 1 of 4) protein_coding-intron (ENSMUSG00000021951.7, intron 1 of 4) 3489 ENSMUSG00000021951.7 ENSMUSG00000021951 ENSMUST00000225504 Eef1akmt1 protein_coding Interval_156696 chr8 57409790 57411007 + 0 NA intron (ENSMUSG00000109629.1, intron 1 of 3) lincRNA-intron (ENSMUSG00000109629.1, intron 1 of 3) 7294 ENSMUSG00000109629.1 ENSMUSG00000109629 ENSMUST00000211592 Gm34099 lincRNA Interval_104085 chr3 58485652 58486258 + 0 NA Intergenic Intergenic 39937 ENSMUSG00000027808.8 ENSMUSG00000027808 ENSMUST00000029385 Serp1 protein_coding Interval_137433 chr6 72245900 72246141 + 0 NA Intergenic Intergenic -10790 ENSMUSG00000037621.8 ENSMUSG00000037621 ENSMUST00000206553 Atoh8 protein_coding Interval_142572 chr6 143422979 143424086 + 0 NA Intergenic Intergenic 41865 ENSMUSG00000077241.1 ENSMUSG00000077241 ENSMUST00000104053 Gm23272 snoRNA Interval_143130 chr7 3515335 3515772 + 0 NA promoter-TSS (ENSMUSG00000118635.1) unprocessed_pseudogene-promoter-TSS (ENSMUSG00000118635.1) -188 ENSMUSG00000118635.1 ENSMUSG00000118635 ENSMUST00000239381 AC240460.1 unprocessed_pseudogene Interval_38144 chr12 75927393 75928153 + 0 NA intron (ENSMUSG00000063450.14, intron 27 of 114) protein_coding-intron (ENSMUSG00000063450.14, intron 27 of 115) 18670 ENSMUSG00000092922.1 ENSMUSG00000092922 ENSMUST00000175181 Mir5101 miRNA Interval_136366 chr6 53817803 53821042 + 0 NA promoter-TSS (ENSMUSG00000108255.1) lincRNA-promoter-TSS (ENSMUSG00000108255.1) -552 ENSMUSG00000108255.1 ENSMUSG00000108255 ENSMUST00000104970 Gm16499 lincRNA Interval_86607 chr19 42018795 42019389 + 0 NA intron (ENSMUSG00000025171.2, intron 1 of 2) protein_coding-intron (ENSMUSG00000025171.2, intron 1 of 2) 1943 ENSMUSG00000025171.2 ENSMUSG00000025171 ENSMUST00000237817 Ubtd1 protein_coding Interval_107326 chr3 105861708 105861928 + 0 NA Intergenic Intergenic -9089 ENSMUSG00000074344.7 ENSMUSG00000074344 ENSMUST00000199977 Tmigd3 protein_coding Interval_32739 chr11 110256456 110259091 + 0 NA Intergenic Intergenic -5997 ENSMUSG00000044749.13 ENSMUSG00000044749 ENSMUST00000150988 Abca6 protein_coding Interval_45412 chr13 54973964 54974451 + 0 NA intron (ENSMUSG00000025876.15, intron 1 of 14) protein_coding-intron (ENSMUSG00000025876.15, intron 1 of 15) -28803 ENSMUSG00000025876.15 ENSMUSG00000025876 ENSMUST00000137967 Unc5a protein_coding Interval_102548 chr3 27671955 27673419 + 0 NA intron (ENSMUSG00000039286.12, intron 1 of 4) protein_coding-intron (ENSMUSG00000039286.12, intron 1 of 25) 37711 ENSMUSG00000039286.12 ENSMUSG00000039286 ENSMUST00000193779 Fndc3b protein_coding Interval_148394 chr7 81003709 81003913 + 0 NA intron (ENSMUSG00000005621.11, intron 1 of 9) protein_coding-intron (ENSMUSG00000005621.11, intron 1 of 9) 9128 ENSMUSG00000109302.1 ENSMUSG00000109302 ENSMUST00000207047 Gm44967 TEC Interval_119313 chr4 136815043 136816615 + 0 NA intron (ENSMUSG00000028664.14, intron 1 of 2) protein_coding-intron (ENSMUSG00000028664.14, intron 1 of 15) 70358 ENSMUSG00000036905.8 ENSMUSG00000036905 ENSMUST00000046384 C1qb protein_coding Interval_123891 chr5 36339574 36339860 + 0 NA intron (ENSMUSG00000029093.14, intron 1 of 4) protein_coding-intron (ENSMUSG00000029093.14, intron 1 of 26) 26201 ENSMUSG00000029093.14 ENSMUSG00000029093 ENSMUST00000141508 Sorcs2 protein_coding Interval_139273 chr6 97761267 97761792 + 0 NA Intergenic Intergenic -28983 ENSMUSG00000089464.1 ENSMUSG00000089464 ENSMUST00000158839 Gm23703 snoRNA Interval_122850 chr5 26066242 26066428 + 0 NA Intergenic Intergenic -4202 ENSMUSG00000105422.1 ENSMUSG00000105422 ENSMUST00000197666 Gm6089 processed_pseudogene Interval_37092 chr12 57787557 57787745 + 0 NA Intergenic Intergenic -88589 ENSMUSG00000111886.1 ENSMUSG00000111886 ENSMUST00000217711 Gm47617 processed_pseudogene Interval_142045 chr6 136721620 136722435 + 0 NA intron (ENSMUSG00000042638.14, intron 16 of 25) protein_coding-intron (ENSMUSG00000042638.14, intron 17 of 26) -26744 ENSMUSG00000107850.1 ENSMUSG00000107850 ENSMUST00000203395 Gm4714 processed_pseudogene Interval_12 GL456210.1 159056 159883 + 0 NA NA NA NA NA Interval_26880 chr11 61251568 61252211 + 0 NA promoter-TSS (ENSMUSG00000010025.19) protein_coding-promoter-TSS (ENSMUSG00000010025.19) -879 ENSMUSG00000010025.19 ENSMUSG00000010025 ENSMUST00000149298 Aldh3a2 protein_coding Interval_47008 chr13 74300595 74302860 + 0 NA Intergenic Intergenic 15489 ENSMUSG00000021576.6 ENSMUSG00000021576 ENSMUST00000223386 Pdcd6 protein_coding Interval_93775 chr2 76791116 76791880 + 0 NA exon (ENSMUSG00000051747.15, exon 89 of 191) protein_coding-exon (ENSMUSG00000051747.15, exon 89 of 191) 45316 ENSMUSG00000051747.15 ENSMUSG00000051747 ENSMUST00000147048 Ttn protein_coding Interval_75041 chr17 62048391 62049947 + 0 NA Intergenic Intergenic 176794 ENSMUSG00000117160.1 ENSMUSG00000117160 ENSMUST00000232834 Gm49859 processed_pseudogene Interval_163112 chr9 15343511 15344165 + 0 NA TTS (ENSMUSG00000046111.17) protein_coding-TTS (ENSMUSG00000046111.17) 13265 ENSMUSG00000089702.1 ENSMUSG00000089702 ENSMUST00000066038 Gm16568 antisense Interval_69156 chr16 91023535 91023890 + 0 NA intron (ENSMUSG00000022974.12, intron 12 of 17) protein_coding-intron (ENSMUSG00000022974.12, intron 12 of 17) -4481 ENSMUSG00000022974.12 ENSMUSG00000022974 ENSMUST00000127002 Paxbp1 protein_coding Interval_5119 chr1 85806323 85807842 + 0 NA intron (ENSMUSG00000036707.16, intron 2 of 9) protein_coding-intron (ENSMUSG00000036707.16, intron 2 of 9) 22369 ENSMUSG00000092932.2 ENSMUSG00000092932 ENSMUST00000175191 Gm22906 misc_RNA Interval_151016 chr7 117736580 117736777 + 0 NA Intergenic Intergenic -40116 ENSMUSG00000088116.1 ENSMUSG00000088116 ENSMUST00000157491 Gm24063 miRNA Interval_78999 chr18 23820788 23821897 + 0 NA intron (ENSMUSG00000024277.14, intron 1 of 5) protein_coding-intron (ENSMUSG00000024277.14, intron 1 of 6) -3971 ENSMUSG00000089290.1 ENSMUSG00000089290 ENSMUST00000158665 Gm23207 snRNA Interval_16038 chr10 60246422 60246975 + 0 NA Intergenic Intergenic -30930 ENSMUSG00000004207.14 ENSMUSG00000004207 ENSMUST00000165878 Psap protein_coding Interval_103627 chr3 51288794 51289661 + 0 NA intron (ENSMUSG00000037174.18, intron 4 of 9) protein_coding-intron (ENSMUSG00000037174.18, intron 4 of 9) -7952 ENSMUSG00000077420.1 ENSMUSG00000077420 ENSMUST00000104232 Gm24282 miRNA Interval_18951 chr10 93325719 93327208 + 0 NA Intergenic Intergenic -8930 ENSMUSG00000110647.2 ENSMUSG00000110647 ENSMUST00000212186 Gm17745 lincRNA Interval_440 chr1 5303935 5304398 + 0 NA Intergenic Intergenic -3573 ENSMUSG00000104046.1 ENSMUSG00000104046 ENSMUST00000193241 Gm37567 TEC Interval_113284 chr4 53115216 53115557 + 0 NA intron (ENSMUSG00000015243.4, intron 5 of 49) protein_coding-intron (ENSMUSG00000015243.4, intron 5 of 49) -74460 ENSMUSG00000015243.4 ENSMUSG00000015243 ENSMUST00000149127 Abca1 protein_coding Interval_65464 chr16 22482639 22482871 + 0 NA intron (ENSMUSG00000022861.17, intron 22 of 24) protein_coding-intron (ENSMUSG00000022861.17, intron 21 of 23) -28725 ENSMUSG00000089874.1 ENSMUSG00000089874 ENSMUST00000159309 9230117E06Rik antisense Interval_111834 chr4 31665293 31665628 + 0 NA Intergenic Intergenic 284988 ENSMUSG00000082254.1 ENSMUSG00000082254 ENSMUST00000118967 Gm11922 processed_pseudogene Interval_108213 chr3 122504801 122505056 + 0 NA exon (ENSMUSG00000028121.8, exon 4 of 12) protein_coding-exon (ENSMUSG00000028121.8, exon 4 of 12) 36753 ENSMUSG00000104773.1 ENSMUSG00000104773 ENSMUST00000196051 Mir7657 miRNA Interval_115832 chr4 105129467 105130165 + 0 NA Intergenic Intergenic -19926 ENSMUSG00000028518.8 ENSMUSG00000028518 ENSMUST00000030243 Prkaa2 protein_coding Interval_130121 chr5 124410573 124411384 + 0 NA intron (ENSMUSG00000038095.15, intron 2 of 4) protein_coding-intron (ENSMUSG00000038095.15, intron 3 of 31) -5249 ENSMUSG00000038095.15 ENSMUSG00000038095 ENSMUST00000197974 Sbno1 protein_coding Interval_126223 chr5 83104869 83105446 + 0 NA Intergenic Intergenic -64153 ENSMUSG00000106606.1 ENSMUSG00000106606 ENSMUST00000199513 Gm43217 processed_pseudogene Interval_145941 chr7 42497151 42498028 + 0 NA intron (ENSMUSG00000092416.2, intron 1 of 4) protein_coding-intron (ENSMUSG00000092416.2, intron 4 of 5) 8788 ENSMUSG00000092505.1 ENSMUSG00000092505 ENSMUST00000173599 Gm19246 processed_pseudogene Interval_171132 chr9 114690470 114690694 + 0 NA intron (ENSMUSG00000032435.9, intron 2 of 2) protein_coding-intron (ENSMUSG00000032435.9, intron 2 of 12) 1792 ENSMUSG00000032435.9 ENSMUSG00000032435 ENSMUST00000047404 Dync1li1 protein_coding Interval_88233 chr19 60882868 60883594 + 0 NA Intergenic Intergenic -7232 ENSMUSG00000003228.9 ENSMUSG00000003228 ENSMUST00000236876 Grk5 protein_coding Interval_173165 chrX 73732553 73733077 + 0 NA intron (ENSMUSG00000031378.14, intron 5 of 9) protein_coding-intron (ENSMUSG00000031378.14, intron 5 of 9) 16075 ENSMUSG00000031378.14 ENSMUSG00000031378 ENSMUST00000114461 Abcd1 protein_coding Interval_4123 chr1 69687032 69687990 + 0 NA promoter-TSS (ENSMUSG00000025997.13) protein_coding-promoter-TSS (ENSMUSG00000025997.13) -3354 ENSMUSG00000025997.13 ENSMUSG00000025997 ENSMUST00000188919 Ikzf2 protein_coding Interval_126865 chr5 96119649 96120199 + 0 NA intron (ENSMUSG00000034724.18, intron 4 of 11) protein_coding-intron (ENSMUSG00000034724.18, intron 4 of 11) 42066 ENSMUSG00000034724.18 ENSMUSG00000034724 ENSMUST00000154500 Cnot6l protein_coding Interval_124859 chr5 57128267 57128761 + 0 NA TTS (ENSMUSG00000077333.1) snoRNA-TTS (ENSMUSG00000077333.1) 258 ENSMUSG00000077333.1 ENSMUSG00000077333 ENSMUST00000104145 Gm23015 snoRNA Interval_104707 chr3 69593722 69594254 + 0 NA intron (ENSMUSG00000043300.2, intron 1 of 2) protein_coding-intron (ENSMUSG00000043300.2, intron 1 of 2) 4972 ENSMUSG00000043300.2 ENSMUSG00000043300 ENSMUST00000061826 B3galnt1 protein_coding Interval_23910 chr11 28202852 28203158 + 0 NA Intergenic Intergenic 136809 ENSMUSG00000032889.7 ENSMUSG00000032889 ENSMUST00000042595 Gm6685 processed_pseudogene Interval_95385 chr2 107563048 107563284 + 0 NA Intergenic Intergenic 37373 ENSMUSG00000052005.8 ENSMUSG00000052005 ENSMUST00000090043 Gm9864 pseudogene Interval_131720 chr5 139489683 139489896 + 0 NA Intergenic Intergenic -5325 ENSMUSG00000053581.13 ENSMUSG00000053581 ENSMUST00000143889 Zfand2a protein_coding Interval_173495 chrX 95967485 95969099 + 0 NA Intergenic Intergenic -20089 ENSMUSG00000057421.12 ENSMUSG00000057421 ENSMUST00000139717 Las1l protein_coding Interval_80418 chr18 42038478 42038731 + 0 NA Intergenic Intergenic -39555 ENSMUSG00000073574.4 ENSMUSG00000073574 ENSMUST00000097591 Grxcr2 protein_coding Interval_171562 chr9 119215331 119215538 + 0 NA intron (ENSMUSG00000070280.13, intron 1 of 10) protein_coding-intron (ENSMUSG00000070280.13, intron 1 of 10) -6336 ENSMUSG00000074028.4 ENSMUSG00000074028 ENSMUST00000084797 Slc22a13 protein_coding Interval_100179 chr2 167497233 167497710 + 0 NA intron (ENSMUSG00000006418.17, intron 1 of 7) protein_coding-intron (ENSMUSG00000006418.17, intron 1 of 7) -4626 ENSMUSG00000047030.15 ENSMUSG00000047030 ENSMUST00000154770 Spata2 protein_coding Interval_51780 chr14 32164368 32165927 + 0 NA promoter-TSS (ENSMUSG00000056234.15) protein_coding-promoter-TSS (ENSMUSG00000056234.15) -9076 ENSMUSG00000115760.1 ENSMUSG00000115760 ENSMUST00000227860 Gm18909 processed_pseudogene Interval_37927 chr12 73088676 73089142 + 0 NA Intergenic Intergenic 24547 ENSMUSG00000034460.9 ENSMUSG00000034460 ENSMUST00000175693 Six4 protein_coding Interval_167350 chr9 67694922 67695411 + 0 NA Intergenic Intergenic -5015 ENSMUSG00000111819.1 ENSMUSG00000111819 ENSMUST00000216655 Gm47110 processed_pseudogene Interval_113266 chr4 52680210 52680475 + 0 NA Intergenic Intergenic 73136 ENSMUSG00000028314.6 ENSMUSG00000028314 ENSMUST00000107671 Toporsl protein_coding Interval_64619 chr16 13705990 13707474 + 0 NA Intergenic Intergenic -23104 ENSMUSG00000086550.2 ENSMUSG00000086550 ENSMUST00000141172 Pla2g10os antisense Interval_127406 chr5 103760004 103761055 + 0 NA intron (ENSMUSG00000029313.18, intron 1 of 12) protein_coding-intron (ENSMUSG00000029313.18, intron 1 of 19) 5965 ENSMUSG00000029313.18 ENSMUSG00000029313 ENSMUST00000152145 Aff1 protein_coding Interval_99599 chr2 163458794 163459124 + 0 NA Intergenic Intergenic -12998 ENSMUSG00000053353.5 ENSMUSG00000053353 ENSMUST00000065731 2310001K24Rik antisense Interval_88125 chr19 59406442 59407159 + 0 NA Intergenic Intergenic 17016 ENSMUSG00000110210.1 ENSMUSG00000110210 ENSMUST00000211358 Gm33756 lincRNA Interval_10816 chr1 175592726 175592955 + 0 NA Intergenic Intergenic 16873 ENSMUSG00000026526.14 ENSMUSG00000026526 ENSMUST00000154956 Fh1 protein_coding Interval_24332 chr11 32450052 32450346 + 0 NA Intergenic Intergenic -5171 ENSMUSG00000044949.4 ENSMUSG00000044949 ENSMUST00000051053 Ubtd2 protein_coding Interval_111418 chr4 21420069 21420366 + 0 NA Intergenic Intergenic 91697 ENSMUSG00000089322.1 ENSMUSG00000089322 ENSMUST00000158697 Gm25977 snoRNA Interval_21084 chr10 126028936 126029273 + 0 NA Intergenic Intergenic -7723 ENSMUSG00000093161.1 ENSMUSG00000093161 ENSMUST00000175420 Gm22183 miRNA Interval_58123 chr15 28154600 28155619 + 0 NA intron (ENSMUSG00000115839.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000115839.1, intron 1 of 2) 353 ENSMUSG00000115839.1 ENSMUSG00000115839 ENSMUST00000227452 Gm49233 lincRNA Interval_22784 chr11 15486036 15486302 + 0 NA intron (ENSMUSG00000083292.1, intron 1 of 1) processed_pseudogene-intron (ENSMUSG00000083292.1, intron 1 of 1) 3863 ENSMUSG00000083292.1 ENSMUSG00000083292 ENSMUST00000122400 Gm12010 processed_pseudogene Interval_57082 chr15 5887337 5887774 + 0 NA Intergenic Intergenic 21320 ENSMUSG00000115106.1 ENSMUSG00000115106 ENSMUST00000228443 Gm8043 processed_pseudogene Interval_136307 chr6 52822351 52823645 + 0 NA intron (ENSMUSG00000063568.11, intron 2 of 4) protein_coding-intron (ENSMUSG00000063568.11, intron 2 of 4) 20703 ENSMUSG00000081872.1 ENSMUSG00000081872 ENSMUST00000119248 Gm15572 processed_pseudogene Interval_106507 chr3 96769754 96770076 + 0 NA intron (ENSMUSG00000028098.13, intron 4 of 9) protein_coding-intron (ENSMUSG00000028098.13, intron 3 of 8) -14410 ENSMUSG00000105976.1 ENSMUSG00000105976 ENSMUST00000197286 Gm42782 TEC Interval_18491 chr10 86697996 86698194 + 0 NA intron (ENSMUSG00000020048.13, intron 3 of 12) protein_coding-intron (ENSMUSG00000020048.13, intron 7 of 17) 4998 ENSMUSG00000020048.13 ENSMUSG00000020048 ENSMUST00000146897 Hsp90b1 protein_coding Interval_72993 chr17 34024187 34025289 + 0 NA promoter-TSS (ENSMUSG00000024325.8) protein_coding-promoter-TSS (ENSMUSG00000024325.8) -274 ENSMUSG00000105964.1 ENSMUSG00000105964 ENSMUST00000199860 Mir219c miRNA Interval_73510 chr17 38406336 38406758 + 0 NA Intergenic Intergenic -13126 ENSMUSG00000117135.1 ENSMUSG00000117135 ENSMUST00000233967 Gm49811 unprocessed_pseudogene Interval_31132 chr11 98342141 98343073 + 0 NA Intergenic Intergenic -11989 ENSMUSG00000061718.12 ENSMUSG00000061718 ENSMUST00000152525 Ppp1r1b protein_coding Interval_90270 chr2 29457303 29458895 + 0 NA intron (ENSMUSG00000026799.15, intron 3 of 4) protein_coding-intron (ENSMUSG00000026799.15, intron 3 of 7) -1095 ENSMUSG00000089597.1 ENSMUSG00000089597 ENSMUST00000158972 Gm24976 rRNA Interval_50303 chr14 11733904 11734623 + 0 NA intron (ENSMUSG00000021745.14, intron 2 of 3) protein_coding-intron (ENSMUSG00000021745.14, intron 2 of 29) -33680 ENSMUSG00000114310.1 ENSMUSG00000114310 ENSMUST00000225152 Gm48602 TEC Interval_9938 chr1 164260797 164261047 + 0 NA exon (ENSMUSG00000040918.12, exon 3 of 6) protein_coding-exon (ENSMUSG00000040918.12, exon 3 of 6) 11669 ENSMUSG00000040918.12 ENSMUSG00000040918 ENSMUST00000160773 Slc19a2 protein_coding Interval_157017 chr8 64497465 64498386 + 0 NA Intergenic Intergenic 16516 ENSMUSG00000076042.1 ENSMUSG00000076042 ENSMUST00000102088 Mir710 miRNA Interval_114971 chr4 87834038 87835042 + 0 NA exon (ENSMUSG00000028496.17, exon 4 of 4) protein_coding-exon (ENSMUSG00000028496.17, exon 4 of 4) -28217 ENSMUSG00000028496.17 ENSMUSG00000028496 ENSMUST00000142454 Mllt3 protein_coding Interval_53868 chr14 62965276 62966671 + 0 NA Intergenic Intergenic -7817 ENSMUSG00000114403.1 ENSMUSG00000114403 ENSMUST00000225378 Gm21021 processed_pseudogene Interval_72856 chr17 32702475 32703227 + 0 NA exon (ENSMUSG00000073424.9, exon 13 of 13) protein_coding-exon (ENSMUSG00000073424.9, exon 13 of 13) 17224 ENSMUSG00000073424.9 ENSMUSG00000073424 ENSMUST00000008801 Cyp4f15 protein_coding Interval_2676 chr1 43201784 43203226 + 0 NA Intergenic Intergenic -5744 ENSMUSG00000008136.14 ENSMUSG00000008136 ENSMUST00000187357 Fhl2 protein_coding Interval_146663 chr7 49272163 49273180 + 0 NA intron (ENSMUSG00000052512.17, intron 1 of 10) protein_coding-intron (ENSMUSG00000052512.17, intron 1 of 37) -70803 ENSMUSG00000052512.17 ENSMUSG00000052512 ENSMUST00000183715 Nav2 protein_coding Interval_59446 chr15 53215268 53216130 + 0 NA intron (ENSMUSG00000061731.9, intron 1 of 10) protein_coding-intron (ENSMUSG00000061731.9, intron 1 of 10) -107831 ENSMUSG00000061731.9 ENSMUSG00000061731 ENSMUST00000140798 Ext1 protein_coding Interval_164501 chr9 37501229 37502242 + 0 NA intron (ENSMUSG00000042138.9, intron 2 of 2) protein_coding-intron (ENSMUSG00000042138.9, intron 1 of 3) 3966 ENSMUSG00000110993.1 ENSMUSG00000110993 ENSMUST00000214783 Gm47963 TEC Interval_103053 chr3 34744668 34746025 + 0 NA Intergenic Intergenic -26729 ENSMUSG00000106519.1 ENSMUSG00000106519 ENSMUST00000197492 Gm38509 lincRNA Interval_306 chr1 3438965 3439527 + 0 NA intron (ENSMUSG00000051951.5, intron 1 of 2) protein_coding-intron (ENSMUSG00000051951.5, intron 1 of 2) -27341 ENSMUSG00000089699.1 ENSMUSG00000089699 ENSMUST00000161581 Gm1992 antisense Interval_5071 chr1 84797453 84798354 + 0 NA intron (ENSMUSG00000026219.14, intron 2 of 5) protein_coding-intron (ENSMUSG00000026219.14, intron 2 of 40) 11287 ENSMUSG00000103505.1 ENSMUSG00000103505 ENSMUST00000194417 Gm38374 TEC Interval_141719 chr6 134020610 134021086 + 0 NA Intergenic Intergenic -52506 ENSMUSG00000108214.1 ENSMUSG00000108214 ENSMUST00000204995 Gm43982 TEC Interval_44064 chr13 40663599 40663861 + 0 NA Intergenic Intergenic -19081 ENSMUSG00000114322.1 ENSMUSG00000114322 ENSMUST00000225346 Gm47041 TEC Interval_60548 chr15 74862514 74862793 + 0 NA Intergenic Intergenic -6335 ENSMUSG00000022589.8 ENSMUSG00000022589 ENSMUST00000167634 Cyp11b2 protein_coding Interval_114569 chr4 82543305 82543622 + 0 NA intron (ENSMUSG00000087413.1, intron 1 of 1) antisense-intron (ENSMUSG00000087413.1, intron 1 of 1) 35447 ENSMUSG00000087413.1 ENSMUSG00000087413 ENSMUST00000139835 Gm11266 antisense Interval_74634 chr17 54002507 54002721 + 0 NA exon (ENSMUSG00000104810.1, exon 1 of 1) processed_pseudogene-exon (ENSMUSG00000104810.1, exon 1 of 1) 242 ENSMUSG00000104810.1 ENSMUSG00000104810 ENSMUST00000198419 Gm5684 processed_pseudogene Interval_107836 chr3 116022448 116023056 + 0 NA intron (ENSMUSG00000027963.14, intron 3 of 3) protein_coding-intron (ENSMUSG00000027963.14, intron 2 of 4) 14924 ENSMUSG00000027963.14 ENSMUSG00000027963 ENSMUST00000106502 Extl2 protein_coding Interval_96296 chr2 121364805 121365081 + 0 NA intron (ENSMUSG00000033498.14, intron 25 of 28) protein_coding-intron (ENSMUSG00000033498.14, intron 25 of 28) 2025 ENSMUSG00000000308.14 ENSMUSG00000000308 ENSMUST00000153040 Ckmt1 protein_coding Interval_44482 chr13 45249945 45250172 + 0 NA intron (ENSMUSG00000113919.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000113772.1, intron 2 of 2) 13647 ENSMUSG00000113772.1 ENSMUSG00000113772 ENSMUST00000222925 Gm47448 lincRNA Interval_91280 chr2 37365274 37365532 + 0 NA Intergenic Intergenic -6207 ENSMUSG00000009030.14 ENSMUSG00000009030 ENSMUST00000147703 Pdcl protein_coding Interval_9254 chr1 155537021 155537497 + 0 NA Intergenic Intergenic -10116 ENSMUSG00000073535.5 ENSMUSG00000073535 ENSMUST00000194133 Gm5532 lincRNA Interval_143490 chr7 10298946 10299256 + 0 NA Intergenic Intergenic -1389 ENSMUSG00000093487.2 ENSMUSG00000093487 ENSMUST00000176352 Vmn1r-ps48 unprocessed_pseudogene Interval_11871 chr1 186602182 186602464 + 0 NA Intergenic Intergenic -43642 ENSMUSG00000103690.1 ENSMUSG00000103690 ENSMUST00000195454 A730004F24Rik lincRNA Interval_83071 chr18 81050522 81050760 + 0 NA TTS (ENSMUSG00000118268.1) lincRNA-TTS (ENSMUSG00000118268.1) 3817 ENSMUSG00000118268.1 ENSMUSG00000118268 ENSMUST00000237569 Gm50424 lincRNA Interval_63506 chr15 101519860 101520197 + 0 NA Intergenic Intergenic -2767 ENSMUSG00000116336.1 ENSMUSG00000116336 ENSMUST00000230067 Gm49425 protein_coding Interval_45954 chr13 59626591 59626818 + 0 NA promoter-TSS (ENSMUSG00000021555.15) protein_coding-promoter-TSS (ENSMUSG00000021555.15) 23395 ENSMUSG00000114535.1 ENSMUSG00000114535 ENSMUST00000225230 Gm47246 TEC Interval_112650 chr4 43804855 43805433 + 0 NA Intergenic Intergenic -4889 ENSMUSG00000081329.1 ENSMUSG00000081329 ENSMUST00000117665 Gm12492 processed_pseudogene Interval_127986 chr5 110098913 110100386 + 0 NA promoter-TSS (ENSMUSG00000064247.14) protein_coding-promoter-TSS (ENSMUSG00000064247.14) -773 ENSMUSG00000064247.14 ENSMUSG00000064247 ENSMUST00000125748 Plcxd1 protein_coding Interval_60141 chr15 66285399 66287228 + 0 NA promoter-TSS (ENSMUSG00000056258.9) protein_coding-promoter-TSS (ENSMUSG00000056258.9) -262 ENSMUSG00000056258.9 ENSMUSG00000056258 ENSMUST00000183633 Kcnq3 protein_coding Interval_127889 chr5 108648622 108648863 + 0 NA TTS (ENSMUSG00000013495.15) protein_coding-TTS (ENSMUSG00000013495.15) 6391 ENSMUSG00000004815.12 ENSMUSG00000004815 ENSMUST00000139598 Dgkq protein_coding Interval_92338 chr2 59121145 59121368 + 0 NA intron (ENSMUSG00000036641.9, intron 1 of 14) protein_coding-intron (ENSMUSG00000036641.9, intron 1 of 14) 27367 ENSMUSG00000084250.1 ENSMUSG00000084250 ENSMUST00000118185 Gm13550 processed_pseudogene Interval_55472 chr14 87682040 87682255 + 0 NA Intergenic Intergenic -44677 ENSMUSG00000115608.1 ENSMUSG00000115608 ENSMUST00000228615 Gm48922 processed_pseudogene Interval_40139 chr12 101912462 101913758 + 0 NA promoter-TSS (ENSMUSG00000021188.14) protein_coding-promoter-TSS (ENSMUSG00000021188.14) 13 ENSMUSG00000021188.14 ENSMUSG00000021188 ENSMUST00000085086 Trip11 protein_coding Interval_64006 chr16 5194411 5195851 + 0 NA TTS (ENSMUSG00000023143.10) protein_coding-TTS (ENSMUSG00000023143.10) 2634 ENSMUSG00000023143.10 ENSMUSG00000023143 ENSMUST00000144490 Nagpa protein_coding Interval_122644 chr5 24423248 24423954 + 0 NA promoter-TSS (ENSMUSG00000028969.10) protein_coding-promoter-TSS (ENSMUSG00000028969.10) -116 ENSMUSG00000028969.10 ENSMUSG00000028969 ENSMUST00000197619 Cdk5 protein_coding Interval_105288 chr3 84615203 84615960 + 0 NA intron (ENSMUSG00000102805.5, intron 3 of 9) protein_coding-intron (ENSMUSG00000102805.5, intron 3 of 9) 22007 ENSMUSG00000047819.3 ENSMUSG00000047819 ENSMUST00000062623 Tigd4 protein_coding Interval_10243 chr1 167466788 167467101 + 0 NA promoter-TSS (ENSMUSG00000040485.5) protein_coding-promoter-TSS (ENSMUSG00000040485.5) -164 ENSMUSG00000040485.5 ENSMUSG00000040485 ENSMUST00000036643 Lrrc52 protein_coding Interval_63433 chr15 101056306 101056514 + 0 NA intron (ENSMUSG00000095440.2, intron 1 of 1) protein_coding-intron (ENSMUSG00000095440.2, intron 1 of 1) -9013 ENSMUSG00000113558.1 ENSMUSG00000113558 ENSMUST00000222611 Tmdd1 protein_coding Interval_26509 chr11 58239023 58239810 + 0 NA Intergenic Intergenic -7966 ENSMUSG00000118428.1 ENSMUSG00000118428 ENSMUST00000238359 Gm5038 unitary_pseudogene Interval_44611 chr13 46696783 46697126 + 0 NA promoter-TSS (ENSMUSG00000021374.10) protein_coding-promoter-TSS (ENSMUSG00000021374.10) 10863 ENSMUSG00000021374.10 ENSMUSG00000021374 ENSMUST00000183299 Nup153 protein_coding Interval_110246 chr3 154816836 154818494 + 0 NA intron (ENSMUSG00000040086.13, intron 21 of 22) protein_coding-intron (ENSMUSG00000040086.13, intron 23 of 24) -21942 ENSMUSG00000118443.1 ENSMUSG00000118443 ENSMUST00000238360 Gm18589 unitary_pseudogene Interval_31203 chr11 98880856 98881027 + 0 NA intron (ENSMUSG00000038013.14, intron 1 of 3) protein_coding-intron (ENSMUSG00000038013.14, intron 1 of 7) -10232 ENSMUSG00000038013.14 ENSMUSG00000038013 ENSMUST00000148439 Wipf2 protein_coding Interval_109304 chr3 138787906 138789733 + 0 NA intron (ENSMUSG00000028152.10, intron 2 of 5) protein_coding-intron (ENSMUSG00000028152.10, intron 1 of 7) 40343 ENSMUSG00000086123.3 ENSMUSG00000086123 ENSMUST00000153140 Gm16060 processed_pseudogene Interval_135520 chr6 39890712 39891536 + 0 NA intron (ENSMUSG00000057716.7, intron 1 of 3) protein_coding-intron (ENSMUSG00000057716.7, intron 1 of 3) -19153 ENSMUSG00000097406.1 ENSMUSG00000097406 ENSMUST00000180899 Gm26833 antisense Interval_110499 chr3 159839423 159841787 + 0 NA intron (ENSMUSG00000028173.10, intron 1 of 6) protein_coding-intron (ENSMUSG00000028173.10, intron 1 of 11) 866 ENSMUSG00000028173.10 ENSMUSG00000028173 ENSMUST00000196782 Wls protein_coding Interval_109425 chr3 142274957 142275160 + 0 NA intron (ENSMUSG00000028273.15, intron 3 of 4) protein_coding-intron (ENSMUSG00000028273.15, intron 8 of 12) 28921 ENSMUSG00000028273.15 ENSMUSG00000028273 ENSMUST00000058626 Pdlim5 protein_coding Interval_48287 chr13 97760363 97762091 + 0 NA promoter-TSS (ENSMUSG00000069117.4) protein_coding-promoter-TSS (ENSMUSG00000069117.4) -595 ENSMUSG00000069117.4 ENSMUSG00000069117 ENSMUST00000074072 Rps18-ps6 protein_coding Interval_58327 chr15 32401978 32402938 + 0 NA intron (ENSMUSG00000022231.10, intron 2 of 7) protein_coding-intron (ENSMUSG00000022231.10, intron 2 of 22) 157633 ENSMUSG00000022231.10 ENSMUSG00000022231 ENSMUST00000227429 Sema5a protein_coding Interval_31404 chr11 100493421 100494454 + 0 NA exon (ENSMUSG00000020917.17, exon 17 of 28) protein_coding-exon (ENSMUSG00000020917.17, exon 17 of 28) -15457 ENSMUSG00000104854.1 ENSMUSG00000104854 ENSMUST00000195956 Mir7116 miRNA Interval_17859 chr10 80446019 80446724 + 0 NA Intergenic Intergenic -15386 ENSMUSG00000020167.14 ENSMUSG00000020167 ENSMUST00000156244 Tcf3 protein_coding Interval_105490 chr3 86976325 86977155 + 0 NA Intergenic Intergenic -9811 ENSMUSG00000041750.13 ENSMUSG00000041750 ENSMUST00000041920 Cd1d2 polymorphic_pseudogene Interval_76867 chr17 84619902 84620498 + 0 NA exon (ENSMUSG00000040852.6, exon 30 of 30) protein_coding-exon (ENSMUSG00000040852.6, exon 30 of 30) -4202 ENSMUSG00000065319.1 ENSMUSG00000065319 ENSMUST00000083385 Gm26066 snRNA Interval_118431 chr4 131477098 131477910 + 0 NA Intergenic Intergenic -9693 ENSMUSG00000078531.3 ENSMUSG00000078531 ENSMUST00000149942 Gm831 lincRNA Interval_35604 chr12 25266050 25267315 + 0 NA Intergenic Intergenic -15913 ENSMUSG00000113745.1 ENSMUSG00000113745 ENSMUST00000221995 Gm19340 processed_pseudogene Interval_39176 chr12 85620793 85622222 + 0 NA intron (ENSMUSG00000034271.16, intron 2 of 3) protein_coding-intron (ENSMUSG00000034271.16, intron 2 of 3) 19285 ENSMUSG00000034271.16 ENSMUSG00000034271 ENSMUST00000222689 Jdp2 protein_coding Interval_145943 chr7 42513371 42513962 + 0 NA Intergenic Intergenic -4332 ENSMUSG00000108491.1 ENSMUSG00000108491 ENSMUST00000205616 Gm44523 processed_pseudogene Interval_140649 chr6 120306732 120307770 + 0 NA Intergenic Intergenic -12692 ENSMUSG00000041372.10 ENSMUSG00000041372 ENSMUST00000212457 B4galnt3 protein_coding Interval_32229 chr11 106327468 106328379 + 0 NA intron (ENSMUSG00000001027.7, intron 15 of 23) protein_coding-intron (ENSMUSG00000001027.7, intron 15 of 23) -13394 ENSMUSG00000040592.11 ENSMUSG00000040592 ENSMUST00000167143 Cd79b protein_coding Interval_82077 chr18 67577025 67577978 + 0 NA intron (ENSMUSG00000024533.17, intron 2 of 16) protein_coding-intron (ENSMUSG00000024533.17, intron 2 of 16) 15107 ENSMUSG00000091695.2 ENSMUSG00000091695 ENSMUST00000163749 Gm17669 processed_pseudogene Interval_82347 chr18 71573973 71574273 + 0 NA intron (ENSMUSG00000060534.16, intron 9 of 28) protein_coding-intron (ENSMUSG00000060534.16, intron 9 of 28) -666472 ENSMUSG00000118271.1 ENSMUSG00000118271 ENSMUST00000236972 Gm50262 processed_pseudogene Interval_35555 chr12 24765728 24766044 + 0 NA TTS (ENSMUSG00000114076.1) lincRNA-TTS (ENSMUSG00000114076.1) 3545 ENSMUSG00000114076.1 ENSMUSG00000114076 ENSMUST00000222531 Gm48896 lincRNA Interval_91209 chr2 35930690 35932112 + 0 NA intron (ENSMUSG00000026885.13, intron 2 of 7) protein_coding-intron (ENSMUSG00000026885.13, intron 3 of 9) 21013 ENSMUSG00000026885.13 ENSMUSG00000026885 ENSMUST00000162172 Ttll11 protein_coding Interval_85527 chr19 28106419 28107563 + 0 NA Intergenic Intergenic 18135 ENSMUSG00000101084.1 ENSMUSG00000101084 ENSMUST00000186880 Gm28228 lincRNA Interval_40313 chr12 103515414 103515808 + 0 NA Intergenic Intergenic 32169 ENSMUSG00000113383.1 ENSMUSG00000113383 ENSMUST00000221223 Gm47267 lincRNA Interval_48663 chr13 100955843 100956723 + 0 NA intron (ENSMUSG00000100596.1, intron 2 of 2) lincRNA-intron (ENSMUSG00000100596.1, intron 2 of 2) -9468 ENSMUSG00000114759.1 ENSMUSG00000114759 ENSMUST00000223572 Gm10257 processed_pseudogene Interval_24845 chr11 40253157 40253343 + 0 NA intron (ENSMUSG00000085301.1, intron 5 of 7) lincRNA-intron (ENSMUSG00000085301.1, intron 5 of 7) 170104 ENSMUSG00000082295.1 ENSMUSG00000082295 ENSMUST00000121775 Gm12133 processed_pseudogene Interval_149363 chr7 97718843 97720382 + 0 NA TTS (ENSMUSG00000025439.5) protein_coding-TTS (ENSMUSG00000025439.5) 1817 ENSMUSG00000025439.5 ENSMUSG00000025439 ENSMUST00000205667 Clns1a protein_coding Interval_150700 chr7 113576426 113577774 + 0 NA Intergenic Intergenic -15762 ENSMUSG00000109968.1 ENSMUSG00000109968 ENSMUST00000211320 Gm45612 processed_pseudogene Interval_144053 chr7 19208368 19211099 + 0 NA Intergenic Intergenic -2805 ENSMUSG00000044317.7 ENSMUSG00000044317 ENSMUST00000060225 Gpr4 protein_coding Interval_118972 chr4 134786904 134787803 + 0 NA Intergenic Intergenic 23860 ENSMUSG00000028826.14 ENSMUSG00000028826 ENSMUST00000136113 Maco1 protein_coding Interval_119389 chr4 137398743 137399154 + 0 NA Intergenic Intergenic 3649 ENSMUSG00000070667.7 ENSMUSG00000070667 ENSMUST00000116034 Rpl31-ps10 processed_pseudogene Interval_120341 chr4 148003072 148004079 + 0 NA TTS (ENSMUSG00000029016.13) protein_coding-TTS (ENSMUSG00000029016.13) 439 ENSMUSG00000086806.1 ENSMUSG00000086806 ENSMUST00000154192 Gm13054 antisense Interval_89339 chr2 19461848 19462053 + 0 NA TTS (ENSMUSG00000026734.9) protein_coding-TTS (ENSMUSG00000026734.9) 9480 ENSMUSG00000056329.3 ENSMUSG00000056329 ENSMUST00000149577 1810010K12Rik processed_transcript Interval_99211 chr2 158093396 158094332 + 0 NA intron (ENSMUSG00000027651.16, intron 5 of 5) protein_coding-intron (ENSMUSG00000027651.16, intron 5 of 5) -2067 ENSMUSG00000100860.1 ENSMUSG00000100860 ENSMUST00000186977 2010009K17Rik antisense Interval_61017 chr15 78802135 78804529 + 0 NA promoter-TSS (ENSMUSG00000033170.14) protein_coding-promoter-TSS (ENSMUSG00000033170.14) -663 ENSMUSG00000033170.14 ENSMUSG00000033170 ENSMUST00000071115 Card10 protein_coding Interval_101801 chr3 9614270 9614987 + 0 NA Intergenic Intergenic -41892 ENSMUSG00000103876.1 ENSMUSG00000103876 ENSMUST00000195844 Gm17806 processed_pseudogene Interval_59090 chr15 43514248 43515408 + 0 NA intron (ENSMUSG00000022337.7, intron 10 of 10) protein_coding-intron (ENSMUSG00000022337.7, intron 10 of 10) 37587 ENSMUSG00000022337.7 ENSMUSG00000022337 ENSMUST00000227055 Emc2 protein_coding Interval_56099 chr14 105725865 105726188 + 0 NA Intergenic Intergenic 44197 ENSMUSG00000060143.7 ENSMUSG00000060143 ENSMUST00000227553 Gm10076 lincRNA Interval_36555 chr12 49555183 49555358 + 0 NA Intergenic Intergenic 23313 ENSMUSG00000089025.1 ENSMUSG00000089025 ENSMUST00000158400 Gm25015 snoRNA Interval_138731 chr6 91496203 91497248 + 0 NA exon (ENSMUSG00000030094.8, exon 10 of 13) protein_coding-exon (ENSMUSG00000030094.8, exon 10 of 13) 19159 ENSMUSG00000030094.8 ENSMUSG00000030094 ENSMUST00000206476 Xpc protein_coding Interval_51636 chr14 30986124 30986577 + 0 NA intron (ENSMUSG00000021918.10, intron 11 of 11) protein_coding-intron (ENSMUSG00000021918.10, intron 14 of 14) 15322 ENSMUSG00000021917.16 ENSMUSG00000021917 ENSMUST00000226374 Spcs1 protein_coding Interval_20764 chr10 120842416 120842789 + 0 NA intron (ENSMUSG00000051236.13, intron 2 of 5) protein_coding-intron (ENSMUSG00000051236.13, intron 4 of 6) 7866 ENSMUSG00000051236.13 ENSMUSG00000051236 ENSMUST00000130950 Msrb3 protein_coding Interval_17936 chr10 80900101 80901324 + 0 NA promoter-TSS (ENSMUSG00000020219.7) protein_coding-promoter-TSS (ENSMUSG00000020219.7) 73 ENSMUSG00000020219.7 ENSMUSG00000020219 ENSMUST00000218149 Timm13 protein_coding Interval_57187 chr15 7226143 7226667 + 0 NA intron (ENSMUSG00000042961.13, intron 17 of 22) protein_coding-intron (ENSMUSG00000042961.13, intron 17 of 21) 28363 ENSMUSG00000042961.13 ENSMUSG00000042961 ENSMUST00000159726 Egflam protein_coding Interval_67453 chr16 48869231 48870175 + 0 NA Intergenic Intergenic -2918 ENSMUSG00000022651.6 ENSMUSG00000022651 ENSMUST00000065666 Retnlg protein_coding Interval_64608 chr16 13650393 13650642 + 0 NA TTS (ENSMUSG00000022685.9) protein_coding-TTS (ENSMUSG00000022685.9) 17621 ENSMUSG00000022685.9 ENSMUSG00000022685 ENSMUST00000229251 Parn protein_coding Interval_154012 chr8 11864433 11864635 + 0 NA Intergenic Intergenic -9625 ENSMUSG00000109772.1 ENSMUSG00000109772 ENSMUST00000210446 Gm39132 lincRNA Interval_86771 chr19 43738651 43738851 + 0 NA intron (ENSMUSG00000040018.9, intron 1 of 1) protein_coding-intron (ENSMUSG00000040018.9, intron 7 of 8) 1351 ENSMUSG00000040018.9 ENSMUSG00000040018 ENSMUST00000129242 Cox15 protein_coding Interval_50012 chr13 119709195 119710647 + 0 NA TTS (ENSMUSG00000095930.1) protein_coding-TTS (ENSMUSG00000095930.1) -5372 ENSMUSG00000114934.1 ENSMUSG00000114934 ENSMUST00000223791 Gm48342 antisense Interval_122267 chr5 20817764 20818002 + 0 NA intron (ENSMUSG00000039987.15, intron 2 of 5) protein_coding-intron (ENSMUSG00000039987.15, intron 2 of 17) 11793 ENSMUSG00000082716.1 ENSMUSG00000082716 ENSMUST00000118086 Rpl31-ps5 processed_pseudogene Interval_93792 chr2 76929659 76930214 + 0 NA intron (ENSMUSG00000051747.15, intron 1 of 144) protein_coding-intron (ENSMUSG00000051747.15, intron 42 of 190) 92760 ENSMUSG00000044033.16 ENSMUSG00000044033 ENSMUST00000111833 Ccdc141 protein_coding Interval_96397 chr2 122185994 122186928 + 0 NA promoter-TSS (ENSMUSG00000027233.4) protein_coding-promoter-TSS (ENSMUSG00000027233.4) -13 ENSMUSG00000027229.5 ENSMUSG00000027229 ENSMUST00000149861 Terb2 protein_coding Interval_172304 chrX 12761372 12762628 + 0 NA promoter-TSS (ENSMUSG00000064127.13) protein_coding-promoter-TSS (ENSMUSG00000064127.13) -544 ENSMUSG00000085891.7 ENSMUSG00000085891 ENSMUST00000151112 Gm14634 processed_transcript Interval_110313 chr3 156599907 156600297 + 0 NA intron (ENSMUSG00000040037.13, intron 1 of 6) protein_coding-intron (ENSMUSG00000040037.13, intron 1 of 6) 37956 ENSMUSG00000040037.13 ENSMUSG00000040037 ENSMUST00000175773 Negr1 protein_coding Interval_142807 chr6 145865374 145866858 + 0 NA promoter-TSS (ENSMUSG00000030256.11) protein_coding-promoter-TSS (ENSMUSG00000030256.11) -764 ENSMUSG00000030256.11 ENSMUSG00000030256 ENSMUST00000203949 Bhlhe41 protein_coding Interval_20296 chr10 116712632 116713346 + 0 NA Intergenic Intergenic 16188 ENSMUSG00000100198.1 ENSMUSG00000100198 ENSMUST00000185546 1700030O20Rik lincRNA Interval_108025 chr3 120104517 120105653 + 0 NA Intergenic Intergenic 136354 ENSMUSG00000104726.1 ENSMUSG00000104726 ENSMUST00000195974 Gm18384 processed_pseudogene Interval_77485 chr17 89933453 89934491 + 0 NA Intergenic Intergenic -23523 ENSMUSG00000066878.5 ENSMUSG00000066878 ENSMUST00000086423 Gm10184 protein_coding Interval_23781 chr11 26183547 26184163 + 0 NA intron (ENSMUSG00000032985.15, intron 1 of 1) protein_coding-intron (ENSMUSG00000032985.15, intron 1 of 6) -18385 ENSMUSG00000099015.1 ENSMUSG00000099015 ENSMUST00000185114 Mir6372 miRNA Interval_101891 chr3 10430962 10431586 + 0 NA intron (ENSMUSG00000027534.16, intron 4 of 6) protein_coding-intron (ENSMUSG00000027534.16, intron 4 of 7) 8826 ENSMUSG00000027534.16 ENSMUSG00000027534 ENSMUST00000195822 Snx16 protein_coding Interval_28726 chr11 77941468 77941771 + 0 NA intron (ENSMUSG00000000632.13, intron 1 of 15) protein_coding-intron (ENSMUSG00000000632.13, intron 1 of 15) 10580 ENSMUSG00000000632.13 ENSMUSG00000000632 ENSMUST00000126866 Sez6 protein_coding Interval_121574 chr5 3535314 3535720 + 0 NA Intergenic Intergenic -8520 ENSMUSG00000105656.1 ENSMUSG00000105656 ENSMUST00000198296 Gm43017 sense_intronic Interval_56092 chr14 105625890 105626365 + 0 NA exon (ENSMUSG00000110080.1, exon 5 of 5) processed_transcript-exon (ENSMUSG00000110080.1, exon 5 of 5) -2357 ENSMUSG00000098780.1 ENSMUSG00000098780 ENSMUST00000184405 Mir6390 miRNA Interval_96316 chr2 121571690 121572604 + 0 NA intron (ENSMUSG00000027238.17, intron 6 of 14) protein_coding-intron (ENSMUSG00000027238.17, intron 6 of 13) -20796 ENSMUSG00000027238.17 ENSMUSG00000027238 ENSMUST00000153704 Frmd5 protein_coding Interval_130973 chr5 134341528 134343171 + 0 NA Intergenic Intergenic 15895 ENSMUSG00000093311.1 ENSMUSG00000093311 ENSMUST00000175570 Mir3965 miRNA Interval_154094 chr8 12638654 12640018 + 0 NA exon (ENSMUSG00000000759.14, exon 14 of 16) protein_coding-exon (ENSMUSG00000000759.14, exon 14 of 16) -26759 ENSMUSG00000088641.1 ENSMUSG00000088641 ENSMUST00000158016 Gm26483 miRNA Interval_72732 chr17 31808080 31808965 + 0 NA Intergenic Intergenic 18996 ENSMUSG00000117355.1 ENSMUSG00000117355 ENSMUST00000234824 Gm49999 lincRNA Interval_16255 chr10 61742041 61743107 + 0 NA intron (ENSMUSG00000020086.6, intron 7 of 8) protein_coding-intron (ENSMUSG00000020086.6, intron 7 of 8) 14426 ENSMUSG00000020085.15 ENSMUSG00000020085 ENSMUST00000140664 Aifm2 protein_coding Interval_26673 chr11 59602401 59602691 + 0 NA TTS (ENSMUSG00000108457.1) unprocessed_pseudogene-TTS (ENSMUSG00000108457.1) 747 ENSMUSG00000108457.1 ENSMUSG00000108457 ENSMUST00000206700 Gm5027 unprocessed_pseudogene Interval_43914 chr13 38011706 38011936 + 0 NA intron (ENSMUSG00000044566.15, intron 10 of 12) protein_coding-intron (ENSMUSG00000044566.15, intron 10 of 12) -17738 ENSMUSG00000021427.10 ENSMUSG00000021427 ENSMUST00000224399 Ssr1 protein_coding Interval_165728 chr9 51930199 51930490 + 0 NA intron (ENSMUSG00000111357.1, intron 1 of 4) lincRNA-intron (ENSMUSG00000111357.1, intron 1 of 4) 1317 ENSMUSG00000111357.1 ENSMUSG00000111357 ENSMUST00000214327 Gm6980 lincRNA Interval_136260 chr6 52364000 52364169 + 0 NA Intergenic Intergenic -6260 ENSMUSG00000084282.1 ENSMUSG00000084282 ENSMUST00000117393 Gm15054 processed_pseudogene Interval_32959 chr11 113373536 113373961 + 0 NA intron (ENSMUSG00000041654.15, intron 5 of 5) protein_coding-intron (ENSMUSG00000041654.15, intron 6 of 10) -94229 ENSMUSG00000078251.2 ENSMUSG00000078251 ENSMUST00000105048 Gm16487 pseudogene Interval_83163 chr18 82469852 82470732 + 0 NA Intergenic Intergenic 53729 ENSMUSG00000061684.6 ENSMUSG00000061684 ENSMUST00000130005 Rpl21-ps8 processed_pseudogene Interval_80864 chr18 49639556 49639763 + 0 NA Intergenic Intergenic -57810 ENSMUSG00000088904.1 ENSMUSG00000088904 ENSMUST00000158279 Gm25440 snRNA Interval_32238 chr11 106387073 106387908 + 0 NA intron (ENSMUSG00000001029.15, intron 1 of 3) protein_coding-intron (ENSMUSG00000001029.15, intron 1 of 3) -6689 ENSMUSG00000001029.15 ENSMUSG00000001029 ENSMUST00000106809 Icam2 protein_coding Interval_121304 chr4 154871668 154872393 + 0 NA promoter-TSS (ENSMUSG00000087437.7) antisense-promoter-TSS (ENSMUSG00000087437.7) -27 ENSMUSG00000087437.7 ENSMUSG00000087437 ENSMUST00000151696 Gm13112 antisense Interval_46661 chr13 68443313 68443686 + 0 NA Intergenic Intergenic 26333 ENSMUSG00000113382.1 ENSMUSG00000113382 ENSMUST00000221113 Gm48429 unprocessed_pseudogene Interval_140266 chr6 115913936 115915107 + 0 NA exon (ENSMUSG00000030323.13, exon 5 of 13) protein_coding-exon (ENSMUSG00000030323.13, exon 5 of 13) -18035 ENSMUSG00000030324.8 ENSMUSG00000030324 ENSMUST00000203323 Rho protein_coding Interval_32759 chr11 110379633 110380667 + 0 NA Intergenic Intergenic -42434 ENSMUSG00000018800.14 ENSMUSG00000018800 ENSMUST00000148984 Abca5 protein_coding Interval_1479 chr1 23962428 23962779 + 0 NA Intergenic Intergenic -42904 ENSMUSG00000102495.1 ENSMUSG00000102495 ENSMUST00000195143 Gm26524 TEC Interval_86382 chr19 39752374 39753050 + 0 NA Intergenic Intergenic -11658 ENSMUSG00000074882.3 ENSMUSG00000074882 ENSMUST00000099472 Cyp2c68 protein_coding Interval_155995 chr8 41657886 41658535 + 0 NA exon (ENSMUSG00000094568.1, exon 1 of 1) processed_pseudogene-exon (ENSMUSG00000094568.1, exon 1 of 1) 459 ENSMUSG00000094568.1 ENSMUSG00000094568 ENSMUST00000180067 Smarce1-ps1 processed_pseudogene Interval_110472 chr3 158987763 158988425 + 0 NA Intergenic Intergenic 27648 ENSMUSG00000097966.1 ENSMUSG00000097966 ENSMUST00000183173 Gm9423 processed_pseudogene Interval_65691 chr16 25480317 25480547 + 0 NA Intergenic Intergenic -37159 ENSMUSG00000116828.1 ENSMUSG00000116828 ENSMUST00000232460 Gm18896 processed_pseudogene Interval_171156 chr9 114804901 114805295 + 0 NA intron (ENSMUSG00000041012.4, intron 1 of 1) protein_coding-intron (ENSMUSG00000041012.4, intron 1 of 3) 24998 ENSMUSG00000052724.7 ENSMUSG00000052724 ENSMUST00000150678 Gm9888 antisense Interval_24156 chr11 30783063 30783339 + 0 NA intron (ENSMUSG00000040850.17, intron 1 of 4) protein_coding-intron (ENSMUSG00000040850.17, intron 1 of 46) -28240 ENSMUSG00000083990.1 ENSMUSG00000083990 ENSMUST00000121590 Gm12101 processed_pseudogene Interval_165521 chr9 48983870 48985820 + 0 NA promoter-TSS (ENSMUSG00000032267.8) protein_coding-promoter-TSS (ENSMUSG00000032267.8) -19855 ENSMUSG00000008590.4 ENSMUSG00000008590 ENSMUST00000008734 Htr3b protein_coding Interval_25206 chr11 45367432 45368731 + 0 NA Intergenic Intergenic 52703 ENSMUSG00000085476.1 ENSMUSG00000085476 ENSMUST00000123422 Gm12162 lincRNA Interval_35067 chr12 17029876 17030166 + 0 NA Intergenic Intergenic -18467 ENSMUSG00000071398.8 ENSMUSG00000071398 ENSMUST00000189479 2410004P03Rik protein_coding Interval_54974 chr14 76597799 76599204 + 0 NA Intergenic Intergenic 38363 ENSMUSG00000115143.1 ENSMUSG00000115143 ENSMUST00000227724 Fkbp1a-ps1 processed_pseudogene Interval_21687 chr11 3705158 3705743 + 0 NA exon (ENSMUSG00000020435.17, exon 13 of 14) protein_coding-exon (ENSMUSG00000020435.17, exon 13 of 14) -7124 ENSMUSG00000083015.1 ENSMUSG00000083015 ENSMUST00000117960 Gm16518 processed_pseudogene Interval_5008 chr1 84159318 84159493 + 0 NA intron (ENSMUSG00000045658.16, intron 1 of 2) protein_coding-intron (ENSMUSG00000045658.16, intron 1 of 2) -8783 ENSMUSG00000101934.1 ENSMUSG00000101934 ENSMUST00000189162 Gm18304 processed_pseudogene Interval_37875 chr12 72740933 72741324 + 0 NA exon (ENSMUSG00000112989.1, exon 1 of 2) processed_pseudogene-exon (ENSMUSG00000112989.1, exon 1 of 2) 454 ENSMUSG00000112989.1 ENSMUSG00000112989 ENSMUST00000221318 Gm48143 processed_pseudogene Interval_74021 chr17 46104501 46104906 + 0 NA Intergenic Intergenic -10032 ENSMUSG00000117109.1 ENSMUSG00000117109 ENSMUST00000233497 Gm19969 processed_pseudogene Interval_96014 chr2 119188879 119189814 + 0 NA intron (ENSMUSG00000034278.3, intron 1 of 4) protein_coding-intron (ENSMUSG00000034278.3, intron 1 of 10) 1829 ENSMUSG00000081572.3 ENSMUSG00000081572 ENSMUST00000122061 Gm14138 processed_pseudogene Interval_62249 chr15 89167071 89167280 + 0 NA exon (ENSMUSG00000036606.17, exon 2 of 36) protein_coding-exon (ENSMUSG00000036606.17, exon 2 of 36) -4267 ENSMUSG00000106328.1 ENSMUSG00000106328 ENSMUST00000197760 Mir7118 miRNA Interval_100926 chr2 173382167 173383132 + 0 NA Intergenic Intergenic -11917 ENSMUSG00000086114.1 ENSMUSG00000086114 ENSMUST00000147357 Gm14642 lincRNA Interval_69563 chr16 94289160 94290679 + 0 NA intron (ENSMUSG00000040820.16, intron 1 of 10) protein_coding-intron (ENSMUSG00000040820.16, intron 1 of 10) -38501 ENSMUSG00000022941.8 ENSMUSG00000022941 ENSMUST00000023660 Ripply3 protein_coding Interval_131308 chr5 136314034 136314403 + 0 NA intron (ENSMUSG00000029705.17, intron 10 of 19) protein_coding-intron (ENSMUSG00000029705.17, intron 14 of 23) 36013 ENSMUSG00000102415.1 ENSMUSG00000102415 ENSMUST00000195666 A430110C17Rik TEC Interval_144771 chr7 28148012 28148599 + 0 NA intron (ENSMUSG00000078776.9, intron 8 of 18) protein_coding-intron (ENSMUSG00000078776.9, intron 9 of 19) 18489 ENSMUSG00000078776.9 ENSMUSG00000078776 ENSMUST00000150948 9530053A07Rik protein_coding Interval_73744 chr17 43137892 43138602 + 0 NA Intergenic Intergenic 20019 ENSMUSG00000117011.1 ENSMUSG00000117011 ENSMUST00000232795 E130008D07Rik lincRNA Interval_94254 chr2 86600968 86601519 + 0 NA Intergenic Intergenic -2277 ENSMUSG00000111689.1 ENSMUSG00000111689 ENSMUST00000215600 Olfr1082 protein_coding Interval_133382 chr6 4455930 4457619 + 0 NA Intergenic Intergenic 27424 ENSMUSG00000102946.2 ENSMUSG00000102946 ENSMUST00000194970 Gm37883 TEC Interval_19297 chr10 96294370 96295168 + 0 NA Intergenic Intergenic -14576 ENSMUSG00000112234.1 ENSMUSG00000112234 ENSMUST00000220354 Gm48427 lincRNA Interval_173574 chrX 99608070 99609102 + 0 NA Intergenic Intergenic 79188 ENSMUSG00000082505.1 ENSMUSG00000082505 ENSMUST00000117174 Gm14816 processed_pseudogene Interval_44167 chr13 41415971 41416291 + 0 NA intron (ENSMUSG00000021365.15, intron 2 of 2) protein_coding-intron (ENSMUSG00000021365.15, intron 2 of 7) 13840 ENSMUSG00000114552.1 ENSMUSG00000114552 ENSMUST00000224720 Gm48570 antisense Interval_67093 chr16 42863105 42863309 + 0 NA intron (ENSMUSG00000075070.6, intron 2 of 3) lincRNA-intron (ENSMUSG00000075070.6, intron 1 of 1) 12533 ENSMUSG00000075070.6 ENSMUSG00000075070 ENSMUST00000130331 4932412D23Rik lincRNA Interval_144964 chr7 29143736 29144864 + 0 NA intron (ENSMUSG00000030589.15, intron 7 of 16) protein_coding-intron (ENSMUSG00000030589.15, intron 7 of 16) -3988 ENSMUSG00000090009.1 ENSMUSG00000090009 ENSMUST00000162641 Gm16282 antisense Interval_144427 chr7 25094190 25094912 + 0 NA intron (ENSMUSG00000008496.19, intron 12 of 12) protein_coding-intron (ENSMUSG00000008496.19, intron 12 of 13) 2624 ENSMUSG00000098441.1 ENSMUSG00000098441 ENSMUST00000184150 Mir6537 miRNA Interval_134129 chr6 21213948 21217068 + 0 NA promoter-TSS (ENSMUSG00000060882.5) protein_coding-promoter-TSS (ENSMUSG00000060882.5) 5 ENSMUSG00000060882.5 ENSMUSG00000060882 ENSMUST00000081542 Kcnd2 protein_coding Interval_13679 chr10 20954261 20954769 + 0 NA TTS (ENSMUSG00000019986.17) protein_coding-TTS (ENSMUSG00000019986.17) -75542 ENSMUSG00000111177.1 ENSMUSG00000111177 ENSMUST00000213102 Rps2-ps3 processed_pseudogene Interval_121328 chr4 155012545 155013293 + 0 NA intron (ENSMUSG00000029055.17, intron 1 of 6) protein_coding-intron (ENSMUSG00000029055.17, intron 2 of 2) -29127 ENSMUSG00000073686.2 ENSMUSG00000073686 ENSMUST00000097750 Gm10564 antisense Interval_127524 chr5 104828883 104830059 + 0 NA promoter-TSS (ENSMUSG00000072774.10) protein_coding-promoter-TSS (ENSMUSG00000072774.10) 30322 ENSMUSG00000072774.10 ENSMUSG00000072774 ENSMUST00000191135 Zfp951 protein_coding Interval_104116 chr3 58727285 58727536 + 0 NA intron (ENSMUSG00000097725.4, intron 2 of 8) lincRNA-intron (ENSMUSG00000097725.4, intron 2 of 8) 29849 ENSMUSG00000105226.1 ENSMUSG00000105226 ENSMUST00000197219 A930028O11Rik TEC Interval_60682 chr15 76135646 76135963 + 0 NA Intergenic Intergenic -10465 ENSMUSG00000044361.16 ENSMUSG00000044361 ENSMUST00000226663 BC024139 protein_coding Interval_65358 chr16 21825459 21826186 + 0 NA promoter-TSS (ENSMUSG00000033618.7) protein_coding-promoter-TSS (ENSMUSG00000033618.7) -120 ENSMUSG00000033618.7 ENSMUSG00000033618 ENSMUST00000042065 Map3k13 protein_coding Interval_123590 chr5 33657441 33658985 + 0 NA promoter-TSS (ENSMUSG00000037313.16) protein_coding-promoter-TSS (ENSMUSG00000037313.16) 66 ENSMUSG00000037313.16 ENSMUSG00000037313 ENSMUST00000139888 Tacc3 protein_coding Interval_77361 chr17 88240172 88241029 + 0 NA Intergenic Intergenic 64778 ENSMUSG00000117497.1 ENSMUSG00000117497 ENSMUST00000234925 1700116H05Rik lincRNA Interval_88424 chr2 4995455 4995698 + 0 NA promoter-TSS (ENSMUSG00000026669.14) protein_coding-promoter-TSS (ENSMUSG00000026669.14) -738 ENSMUSG00000026669.14 ENSMUSG00000026669 ENSMUST00000125851 Mcm10 protein_coding Interval_35241 chr12 18700128 18701397 + 0 NA Intergenic Intergenic 19388 ENSMUSG00000113768.1 ENSMUSG00000113768 ENSMUST00000221499 Gm9237 unprocessed_pseudogene Interval_81603 chr18 62002016 62002965 + 0 NA intron (ENSMUSG00000045629.8, intron 5 of 9) protein_coding-intron (ENSMUSG00000045629.8, intron 12 of 16) 24531 ENSMUSG00000045629.8 ENSMUSG00000045629 ENSMUST00000236759 Sh3tc2 protein_coding Interval_157260 chr8 68774677 68774869 + 0 NA Intergenic Intergenic -24094 ENSMUSG00000081745.1 ENSMUSG00000081745 ENSMUST00000121595 Gm15549 processed_pseudogene Interval_48896 chr13 104531863 104532778 + 0 NA Intergenic Intergenic -152611 ENSMUSG00000084860.1 ENSMUSG00000084860 ENSMUST00000131215 2610204G07Rik antisense Interval_34655 chr12 8398724 8399071 + 0 NA intron (ENSMUSG00000112452.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000112452.1, intron 1 of 2) 4688 ENSMUSG00000112452.1 ENSMUSG00000112452 ENSMUST00000218567 Gm48075 lincRNA Interval_76104 chr17 75004960 75006627 + 0 NA promoter-TSS (ENSMUSG00000001870.16) protein_coding-promoter-TSS (ENSMUSG00000001870.16) 225 ENSMUSG00000001870.16 ENSMUSG00000001870 ENSMUST00000135750 Ltbp1 protein_coding Interval_148292 chr7 80331926 80333085 + 0 NA intron (ENSMUSG00000030533.16, intron 9 of 19) protein_coding-intron (ENSMUSG00000030533.16, intron 9 of 19) 7666 ENSMUSG00000030533.16 ENSMUSG00000030533 ENSMUST00000206494 Unc45a protein_coding Interval_65636 chr16 24454631 24454837 + 0 NA intron (ENSMUSG00000033306.15, intron 1 of 11) protein_coding-intron (ENSMUSG00000033306.15, intron 2 of 12) -48317 ENSMUSG00000087861.1 ENSMUSG00000087861 ENSMUST00000157236 Gm24440 snRNA Interval_131636 chr5 138991294 138992117 + 0 NA intron (ENSMUSG00000025856.15, intron 2 of 5) protein_coding-intron (ENSMUSG00000025856.15, intron 2 of 6) 2576 ENSMUSG00000025856.15 ENSMUSG00000025856 ENSMUST00000132051 Pdgfa protein_coding Interval_151216 chr7 119765616 119765944 + 0 NA promoter-TSS (ENSMUSG00000030935.15) protein_coding-promoter-TSS (ENSMUSG00000030935.15) 13103 ENSMUSG00000108915.1 ENSMUSG00000108915 ENSMUST00000208096 Gm44966 processed_pseudogene Interval_170302 chr9 106795425 106796147 + 0 NA Intergenic Intergenic -6610 ENSMUSG00000040661.6 ENSMUSG00000040661 ENSMUST00000191300 Rad54l2 protein_coding Interval_156010 chr8 42037296 42038037 + 0 NA intron (ENSMUSG00000102046.1, intron 4 of 5) lincRNA-intron (ENSMUSG00000102046.1, intron 4 of 5) 45443 ENSMUSG00000095057.1 ENSMUSG00000095057 ENSMUST00000107130 Zfp353-ps processed_pseudogene Interval_79280 chr18 29649164 29649380 + 0 NA Intergenic Intergenic 8324 ENSMUSG00000117626.1 ENSMUSG00000117626 ENSMUST00000234976 Gm7917 processed_pseudogene Interval_144928 chr7 28961837 28963876 + 0 NA promoter-TSS (ENSMUSG00000054808.15) protein_coding-promoter-TSS (ENSMUSG00000054808.15) -516 ENSMUSG00000054808.15 ENSMUSG00000054808 ENSMUST00000148196 Actn4 protein_coding Interval_161848 chr8 123158057 123158346 + 0 NA promoter-TSS (ENSMUSG00000000739.14) protein_coding-promoter-TSS (ENSMUSG00000000739.14) 114 ENSMUSG00000000739.14 ENSMUSG00000000739 ENSMUST00000152722 Sult5a1 protein_coding Interval_37775 chr12 71906478 71907289 + 0 NA intron (ENSMUSG00000034574.10, intron 2 of 25) protein_coding-intron (ENSMUSG00000034574.10, intron 2 of 25) -59592 ENSMUSG00000098224.1 ENSMUSG00000098224 ENSMUST00000183329 Gm7985 processed_pseudogene Interval_97787 chr2 144076586 144078237 + 0 NA Intergenic Intergenic -8628 ENSMUSG00000086384.1 ENSMUSG00000086384 ENSMUST00000145504 Banf2os antisense Interval_48603 chr13 100602510 100603053 + 0 NA intron (ENSMUSG00000021636.15, intron 3 of 6) protein_coding-intron (ENSMUSG00000021636.15, intron 3 of 6) -1578 ENSMUSG00000065678.1 ENSMUSG00000065678 ENSMUST00000083744 Gm24261 snRNA Interval_3161 chr1 54250163 54251326 + 0 NA promoter-TSS (ENSMUSG00000025983.11) protein_coding-promoter-TSS (ENSMUSG00000025983.11) -1536 ENSMUSG00000094013.1 ENSMUSG00000094013 ENSMUST00000178275 Gm25829 snRNA Interval_19711 chr10 108239059 108239849 + 0 NA intron (ENSMUSG00000019907.10, intron 5 of 24) protein_coding-intron (ENSMUSG00000019907.10, intron 5 of 25) -10140 ENSMUSG00000019907.10 ENSMUSG00000019907 ENSMUST00000219559 Ppp1r12a protein_coding Interval_93451 chr2 73152071 73152331 + 0 NA intron (ENSMUSG00000027108.15, intron 4 of 9) protein_coding-intron (ENSMUSG00000027108.15, intron 5 of 10) 20456 ENSMUSG00000083569.1 ENSMUSG00000083569 ENSMUST00000120032 Gm13666 processed_pseudogene Interval_918 chr1 13151046 13152095 + 0 NA promoter-TSS (ENSMUSG00000005886.14) protein_coding-promoter-TSS (ENSMUSG00000005886.14) -4940 ENSMUSG00000005886.14 ENSMUSG00000005886 ENSMUST00000145280 Ncoa2 protein_coding Interval_8357 chr1 137888374 137888694 + 0 NA Intergenic Intergenic -10061 ENSMUSG00000098243.3 ENSMUSG00000098243 ENSMUST00000182127 Gm4258 processed_transcript Interval_61861 chr15 84727937 84728654 + 0 NA intron (ENSMUSG00000078954.9, intron 1 of 11) protein_coding-intron (ENSMUSG00000078954.9, intron 1 of 12) -8029 ENSMUSG00000116396.1 ENSMUSG00000116396 ENSMUST00000229841 Gm20556 lincRNA Interval_89477 chr2 20901763 20902133 + 0 NA intron (ENSMUSG00000036591.16, intron 3 of 23) protein_coding-intron (ENSMUSG00000036591.16, intron 4 of 25) 29441 ENSMUSG00000085206.1 ENSMUSG00000085206 ENSMUST00000124322 Gm13380 sense_intronic Interval_28217 chr11 74439102 74440258 + 0 NA intron (ENSMUSG00000038807.19, intron 5 of 25) protein_coding-intron (ENSMUSG00000038807.19, intron 5 of 25) 77611 ENSMUSG00000058275.3 ENSMUSG00000058275 ENSMUST00000077794 Olfr412 protein_coding Interval_82623 chr18 75494271 75495736 + 0 NA intron (ENSMUSG00000052928.9, intron 9 of 11) protein_coding-intron (ENSMUSG00000052928.9, intron 9 of 11) -19642 ENSMUSG00000097712.1 ENSMUSG00000097712 ENSMUST00000181913 Gm10532 antisense Interval_129533 chr5 120749750 120749974 + 0 NA promoter-TSS (ENSMUSG00000032690.16) protein_coding-promoter-TSS (ENSMUSG00000032690.16) 3826 ENSMUSG00000107075.1 ENSMUSG00000107075 ENSMUST00000201095 Gm43068 TEC Interval_132268 chr5 143757924 143758581 + 0 NA promoter-TSS (ENSMUSG00000097287.3) lincRNA-promoter-TSS (ENSMUSG00000097287.3) -5852 ENSMUSG00000097287.3 ENSMUSG00000097287 ENSMUST00000196629 D130017N08Rik lincRNA Interval_149470 chr7 98863960 98864168 + 0 NA Intergenic Intergenic -8969 ENSMUSG00000091496.1 ENSMUSG00000091496 ENSMUST00000172081 Gm8398 processed_pseudogene Interval_102229 chr3 19706380 19707581 + 0 NA Intergenic Intergenic 2340 ENSMUSG00000102261.1 ENSMUSG00000102261 ENSMUST00000194518 Gm18864 processed_pseudogene Interval_9274 chr1 155736435 155738246 + 0 NA intron (ENSMUSG00000026468.14, intron 1 of 4) protein_coding-intron (ENSMUSG00000026468.14, intron 1 of 5) 14344 ENSMUSG00000026468.14 ENSMUSG00000026468 ENSMUST00000195275 Lhx4 protein_coding Interval_171670 chr9 120054743 120056244 + 0 NA intron (ENSMUSG00000052336.7, intron 2 of 2) protein_coding-intron (ENSMUSG00000052336.7, intron 1 of 1) -13503 ENSMUSG00000111792.1 ENSMUSG00000111792 ENSMUST00000216918 Gm33858 antisense Interval_38374 chr12 78055916 78056411 + 0 NA Intergenic Intergenic -109383 ENSMUSG00000088039.1 ENSMUSG00000088039 ENSMUST00000157414 Gm24994 snoRNA Interval_49582 chr13 113199096 113199996 + 0 NA intron (ENSMUSG00000042385.14, intron 2 of 5) protein_coding-intron (ENSMUSG00000042385.14, intron 2 of 5) -10113 ENSMUSG00000042379.8 ENSMUSG00000042379 ENSMUST00000038144 Esm1 protein_coding Interval_64406 chr16 11185262 11187083 + 0 NA promoter-TSS (ENSMUSG00000080790.1) processed_pseudogene-promoter-TSS (ENSMUSG00000080790.1) -73 ENSMUSG00000080790.1 ENSMUSG00000080790 ENSMUST00000121348 Gm7638 processed_pseudogene Interval_115911 chr4 106209761 106210079 + 0 NA Intergenic Intergenic -31296 ENSMUSG00000086249.1 ENSMUSG00000086249 ENSMUST00000140196 Gm12724 processed_transcript Interval_148724 chr7 84667766 84670109 + 0 NA intron (ENSMUSG00000030629.15, intron 1 of 7) protein_coding-intron (ENSMUSG00000030629.15, intron 1 of 7) 20946 ENSMUSG00000030629.15 ENSMUSG00000030629 ENSMUST00000207975 Zfand6 protein_coding Interval_168425 chr9 80191897 80192488 + 0 NA intron (ENSMUSG00000033577.18, intron 1 of 35) protein_coding-intron (ENSMUSG00000033577.18, intron 1 of 32) 26965 ENSMUSG00000033577.18 ENSMUSG00000033577 ENSMUST00000138650 Myo6 protein_coding Interval_156161 chr8 45332440 45334312 + 0 NA promoter-TSS (ENSMUSG00000079057.4) protein_coding-promoter-TSS (ENSMUSG00000079057.4) -160 ENSMUSG00000079057.4 ENSMUSG00000079057 ENSMUST00000095328 Cyp4v3 protein_coding Interval_33439 chr11 116543340 116543702 + 0 NA exon (ENSMUSG00000020802.8, exon 12 of 18) protein_coding-exon (ENSMUSG00000020802.8, exon 12 of 18) 5320 ENSMUSG00000020802.8 ENSMUSG00000020802 ENSMUST00000147851 Ube2o protein_coding Interval_75467 chr17 66802380 66803607 + 0 NA intron (ENSMUSG00000033278.10, intron 6 of 6) protein_coding-intron (ENSMUSG00000033278.10, intron 19 of 32) -20127 ENSMUSG00000117166.1 ENSMUSG00000117166 ENSMUST00000233017 Gm18961 processed_pseudogene Interval_18702 chr10 89443128 89444435 + 0 NA intron (ENSMUSG00000074802.11, intron 1 of 11) protein_coding-intron (ENSMUSG00000074802.11, intron 1 of 10) -9939 ENSMUSG00000074802.11 ENSMUSG00000074802 ENSMUST00000219073 Gas2l3 protein_coding Interval_46484 chr13 66502283 66504258 + 0 NA exon (ENSMUSG00000097483.2, exon 4 of 4) lincRNA-exon (ENSMUSG00000097483.2, exon 4 of 4) -8925 ENSMUSG00000114684.2 ENSMUSG00000114684 ENSMUST00000224225 Vmn2r-ps105 unprocessed_pseudogene Interval_38862 chr12 83486248 83488782 + 0 NA intron (ENSMUSG00000021221.15, intron 1 of 10) protein_coding-intron (ENSMUSG00000021221.15, intron 1 of 8) 201 ENSMUSG00000021221.15 ENSMUSG00000021221 ENSMUST00000177801 Dpf3 protein_coding Interval_124381 chr5 45378381 45378966 + 0 NA intron (ENSMUSG00000029092.9, intron 1 of 5) lincRNA-intron (ENSMUSG00000029092.9, intron 1 of 5) -55716 ENSMUSG00000105255.1 ENSMUSG00000105255 ENSMUST00000196216 Gm42413 antisense Interval_3426 chr1 58271076 58271609 + 0 NA intron (ENSMUSG00000089822.1, intron 4 of 5) antisense-intron (ENSMUSG00000089822.1, intron 4 of 5) -6984 ENSMUSG00000079554.2 ENSMUSG00000079554 ENSMUST00000114366 Aox2 protein_coding Interval_2905 chr1 48927691 48928283 + 0 NA Intergenic Intergenic 46274 ENSMUSG00000097883.1 ENSMUSG00000097883 ENSMUST00000181115 Gm8357 processed_pseudogene Interval_64926 chr16 17263914 17264126 + 0 NA TTS (ENSMUSG00000050240.16) protein_coding-TTS (ENSMUSG00000050240.16) -13075 ENSMUSG00000055692.21 ENSMUSG00000055692 ENSMUST00000231334 Tmem191c protein_coding Interval_50846 chr14 20178451 20178950 + 0 NA intron (ENSMUSG00000023243.9, intron 1 of 4) protein_coding-intron (ENSMUSG00000023243.9, intron 1 of 4) 21254 ENSMUSG00000114523.1 ENSMUSG00000114523 ENSMUST00000225224 Gm48394 processed_pseudogene Interval_11497 chr1 182245235 182245605 + 0 NA Intergenic Intergenic 36804 ENSMUSG00000038633.5 ENSMUSG00000038633 ENSMUST00000133052 Degs1 protein_coding Interval_76452 chr17 80281065 80281782 + 0 NA exon (ENSMUSG00000035051.15, exon 2 of 23) protein_coding-exon (ENSMUSG00000035051.15, exon 2 of 23) -8780 ENSMUSG00000045257.10 ENSMUSG00000045257 ENSMUST00000061703 Morn2 protein_coding Interval_59181 chr15 46865514 46866014 + 0 NA Intergenic Intergenic -73306 ENSMUSG00000115495.1 ENSMUSG00000115495 ENSMUST00000228621 Gm38541 processed_pseudogene Interval_68953 chr16 89651243 89651570 + 0 NA Intergenic Intergenic -17266 ENSMUSG00000116651.1 ENSMUSG00000116651 ENSMUST00000232201 Gm17844 processed_pseudogene Interval_118250 chr4 129819671 129820950 + 0 NA promoter-TSS (ENSMUSG00000028788.14) protein_coding-promoter-TSS (ENSMUSG00000028788.14) -398 ENSMUSG00000028788.14 ENSMUSG00000028788 ENSMUST00000141754 Ptp4a2 protein_coding Interval_124262 chr5 43103736 43104391 + 0 NA Intergenic Intergenic 44264 ENSMUSG00000105087.1 ENSMUSG00000105087 ENSMUST00000196754 Gm42552 TEC Interval_127566 chr5 105399579 105400132 + 0 NA Intergenic Intergenic -1390 ENSMUSG00000097237.1 ENSMUSG00000097237 ENSMUST00000181193 Gm26519 lincRNA Interval_75814 chr17 71590891 71591334 + 0 NA intron (ENSMUSG00000085492.7, intron 1 of 2) antisense-intron (ENSMUSG00000085492.7, intron 1 of 5) 7141 ENSMUSG00000085492.7 ENSMUSG00000085492 ENSMUST00000143828 Trmt61b antisense Interval_12113 chr1 189837786 189837990 + 0 NA intron (ENSMUSG00000026604.17, intron 8 of 9) protein_coding-intron (ENSMUSG00000026604.17, intron 7 of 17) -1268 ENSMUSG00000097925.1 ENSMUSG00000097925 ENSMUST00000181876 Gm26574 antisense Interval_152372 chr7 132507540 132507866 + 0 NA intron (ENSMUSG00000030849.18, intron 2 of 6) protein_coding-intron (ENSMUSG00000030849.18, intron 2 of 6) 24045 ENSMUSG00000108858.1 ENSMUSG00000108858 ENSMUST00000209135 Gm4587 processed_pseudogene Interval_117069 chr4 119356085 119356437 + 0 NA intron (ENSMUSG00000028637.16, intron 4 of 5) protein_coding-intron (ENSMUSG00000028637.16, intron 5 of 6) 17492 ENSMUSG00000028637.16 ENSMUSG00000028637 ENSMUST00000238559 Ccdc30 protein_coding Interval_57532 chr15 12139331 12139792 + 0 NA intron (ENSMUSG00000022201.16, intron 3 of 4) protein_coding-intron (ENSMUSG00000022201.16, intron 4 of 19) 18880 ENSMUSG00000089250.1 ENSMUSG00000089250 ENSMUST00000158625 Gm25713 snRNA Interval_17456 chr10 76986507 76986879 + 0 NA intron (ENSMUSG00000112143.1, intron 3 of 4) lincRNA-intron (ENSMUSG00000112143.1, intron 3 of 4) -2792 ENSMUSG00000102522.1 ENSMUSG00000102522 ENSMUST00000194879 Gm37782 TEC Interval_63205 chr15 99731581 99731898 + 0 NA Intergenic Intergenic 6062 ENSMUSG00000023020.3 ENSMUSG00000023020 ENSMUST00000238530 Cox14 protein_coding Interval_121630 chr5 4066350 4067105 + 0 NA promoter-TSS (ENSMUSG00000040407.18) protein_coding-promoter-TSS (ENSMUSG00000040407.18) -6844 ENSMUSG00000106535.1 ENSMUSG00000106535 ENSMUST00000198500 Gm43031 sense_intronic Interval_50578 chr14 15938277 15938592 + 0 NA Intergenic Intergenic -27119 ENSMUSG00000114794.1 ENSMUSG00000114794 ENSMUST00000225517 Gm47782 lincRNA Interval_21545 chr10 129621712 129622569 + 0 NA TTS (ENSMUSG00000107400.1) unprocessed_pseudogene-TTS (ENSMUSG00000107400.1) 472 ENSMUSG00000107400.1 ENSMUSG00000107400 ENSMUST00000203614 Olfr797-ps1 unprocessed_pseudogene Interval_28160 chr11 73318106 73319352 + 0 NA exon (ENSMUSG00000020774.9, exon 3 of 3) protein_coding-exon (ENSMUSG00000020774.9, exon 3 of 3) 10867 ENSMUSG00000020774.9 ENSMUSG00000020774 ENSMUST00000141898 Aspa protein_coding Interval_3806 chr1 63190934 63191781 + 0 NA intron (ENSMUSG00000046856.13, intron 2 of 2) protein_coding-intron (ENSMUSG00000046856.13, intron 2 of 2) -6674 ENSMUSG00000094290.2 ENSMUSG00000094290 ENSMUST00000175328 Gm27512 miRNA Interval_60676 chr15 76106600 76107399 + 0 NA exon (ENSMUSG00000115388.2, exon 2 of 2) protein_coding-exon (ENSMUSG00000115388.2, exon 2 of 2) 11424 ENSMUSG00000116288.1 ENSMUSG00000116288 ENSMUST00000229255 Gm41349 lincRNA Interval_151484 chr7 123008632 123008931 + 0 NA Intergenic Intergenic -1331 ENSMUSG00000108396.1 ENSMUSG00000108396 ENSMUST00000205729 Gm6905 processed_pseudogene Interval_135442 chr6 39387151 39388549 + 0 NA intron (ENSMUSG00000029923.4, intron 2 of 3) protein_coding-intron (ENSMUSG00000029923.4, intron 2 of 3) 6675 ENSMUSG00000029923.4 ENSMUSG00000029923 ENSMUST00000031986 Rab19 protein_coding Interval_51116 chr14 23574105 23574374 + 0 NA intron (ENSMUSG00000063142.15, intron 5 of 16) protein_coding-intron (ENSMUSG00000063142.15, intron 4 of 28) 13991 ENSMUSG00000100100.1 ENSMUSG00000100100 ENSMUST00000187439 Gm29626 antisense Interval_4822 chr1 79775625 79776547 + 0 NA promoter-TSS (ENSMUSG00000026248.9) protein_coding-promoter-TSS (ENSMUSG00000026248.9) -30 ENSMUSG00000026248.9 ENSMUSG00000026248 ENSMUST00000189176 Mrpl44 protein_coding Interval_42465 chr13 13824377 13824853 + 0 NA intron (ENSMUSG00000021303.14, intron 1 of 1) protein_coding-intron (ENSMUSG00000021303.14, intron 3 of 3) 5336 ENSMUSG00000021303.14 ENSMUSG00000021303 ENSMUST00000220727 Gng4 protein_coding Interval_85540 chr19 28224105 28224296 + 0 NA Intergenic Intergenic 76225 ENSMUSG00000052942.13 ENSMUSG00000052942 ENSMUST00000161328 Glis3 protein_coding Interval_127443 chr5 103972849 103973054 + 0 NA intron (ENSMUSG00000034528.15, intron 1 of 6) protein_coding-intron (ENSMUSG00000034528.15, intron 1 of 6) 4375 ENSMUSG00000034528.15 ENSMUSG00000034528 ENSMUST00000112803 Hsd17b13 protein_coding Interval_24331 chr11 32441536 32442491 + 0 NA Intergenic Intergenic -13357 ENSMUSG00000044949.4 ENSMUSG00000044949 ENSMUST00000051053 Ubtd2 protein_coding Interval_21285 chr10 127666106 127668984 + 0 NA promoter-TSS (ENSMUSG00000025402.12) protein_coding-promoter-TSS (ENSMUSG00000025402.12) 379 ENSMUSG00000040195.11 ENSMUSG00000040195 ENSMUST00000048099 Nemp1 protein_coding Interval_122753 chr5 25142321 25142778 + 0 NA Intergenic Intergenic 16414 ENSMUSG00000105763.1 ENSMUSG00000105763 ENSMUST00000198800 Gm19088 processed_pseudogene Interval_28561 chr11 76728959 76730792 + 0 NA exon (ENSMUSG00000010392.8, exon 9 of 9) protein_coding-exon (ENSMUSG00000010392.8, exon 9 of 9) 33692 ENSMUSG00000010392.8 ENSMUSG00000010392 ENSMUST00000137767 Gosr1 protein_coding Interval_91961 chr2 52042870 52043311 + 0 NA intron (ENSMUSG00000053475.5, intron 1 of 5) protein_coding-intron (ENSMUSG00000053475.5, intron 1 of 5) 5081 ENSMUSG00000053475.5 ENSMUSG00000053475 ENSMUST00000065927 Tnfaip6 protein_coding Interval_145342 chr7 34123266 34124024 + 0 NA intron (ENSMUSG00000036459.15, intron 2 of 6) protein_coding-intron (ENSMUSG00000036459.15, intron 2 of 7) 4392 ENSMUSG00000036459.15 ENSMUSG00000036459 ENSMUST00000140911 Wtip protein_coding Interval_110540 chr4 3753359 3753525 + 0 NA intron (ENSMUSG00000042228.14, intron 8 of 12) protein_coding-intron (ENSMUSG00000042228.14, intron 8 of 12) -32416 ENSMUSG00000083186.1 ENSMUSG00000083186 ENSMUST00000121238 Gm11805 processed_pseudogene Interval_167895 chr9 73723470 73723688 + 0 NA intron (ENSMUSG00000062151.13, intron 10 of 32) protein_coding-intron (ENSMUSG00000062151.13, intron 9 of 31) -46887 ENSMUSG00000099064.1 ENSMUSG00000099064 ENSMUST00000185086 Gm27148 processed_pseudogene Interval_74543 chr17 53197964 53198319 + 0 NA exon (ENSMUSG00000117244.1, exon 2 of 2) processed_pseudogene-exon (ENSMUSG00000117244.1, exon 2 of 2) 1690 ENSMUSG00000117244.1 ENSMUSG00000117244 ENSMUST00000233156 Gm9210 processed_pseudogene Interval_51435 chr14 27488496 27488793 + 0 NA promoter-TSS (ENSMUSG00000088615.1) snRNA-promoter-TSS (ENSMUSG00000088615.1) -625 ENSMUSG00000088615.1 ENSMUSG00000088615 ENSMUST00000157990 Gm22485 snRNA Interval_103015 chr3 34474244 34474510 + 0 NA intron (ENSMUSG00000105265.4, intron 2 of 2) processed_transcript-intron (ENSMUSG00000105265.4, intron 2 of 4) 7830 ENSMUSG00000099437.1 ENSMUSG00000099437 ENSMUST00000188411 Gm29135 lincRNA Interval_93036 chr2 69712956 69713771 + 0 NA promoter-TSS (ENSMUSG00000027086.16) protein_coding-promoter-TSS (ENSMUSG00000027086.16) 135 ENSMUSG00000027086.16 ENSMUSG00000027086 ENSMUST00000129260 Fastkd1 protein_coding Interval_99444 chr2 161172870 161173084 + 0 NA Intergenic Intergenic -6087 ENSMUSG00000067745.4 ENSMUSG00000067745 ENSMUST00000131401 Gm14243 lincRNA Interval_23483 chr11 22858730 22860737 + 0 NA promoter-TSS (ENSMUSG00000051650.11) protein_coding-promoter-TSS (ENSMUSG00000051650.11) -188 ENSMUSG00000051650.11 ENSMUSG00000051650 ENSMUST00000173660 B3gnt2 protein_coding Interval_54220 chr14 66381330 66381572 + 0 NA Intergenic Intergenic 37155 ENSMUSG00000022044.14 ENSMUSG00000022044 ENSMUST00000147477 Stmn4 protein_coding Interval_1603 chr1 29554461 29554664 + 0 NA Intergenic Intergenic -68647 ENSMUSG00000099492.1 ENSMUSG00000099492 ENSMUST00000190438 Gm5525 processed_pseudogene Interval_29803 chr11 86946467 86946773 + 0 NA intron (ENSMUSG00000018427.8, intron 1 of 3) protein_coding-intron (ENSMUSG00000018427.8, intron 2 of 4) 25404 ENSMUSG00000018427.8 ENSMUSG00000018427 ENSMUST00000238921 Ypel2 protein_coding Interval_74789 chr17 56550994 56551308 + 0 NA TTS (ENSMUSG00000110218.1) protein_coding-TTS (ENSMUSG00000110218.1) 3236 ENSMUSG00000110218.1 ENSMUSG00000110218 ENSMUST00000209718 Gm20219 protein_coding Interval_61460 chr15 81761018 81762565 + 0 NA intron (ENSMUSG00000022390.11, intron 1 of 5) protein_coding-intron (ENSMUSG00000022390.11, intron 1 of 22) -13988 ENSMUSG00000022390.11 ENSMUSG00000022390 ENSMUST00000230590 Zc3h7b protein_coding Interval_117412 chr4 123563771 123565854 + 0 NA promoter-TSS (ENSMUSG00000028649.21) protein_coding-promoter-TSS (ENSMUSG00000028649.21) 48931 ENSMUSG00000028649.21 ENSMUSG00000028649 ENSMUST00000146000 Macf1 protein_coding Interval_21954 chr11 5411407 5412288 + 0 NA intron (ENSMUSG00000041961.14, intron 1 of 3) protein_coding-intron (ENSMUSG00000041961.14, intron 1 of 8) -30107 ENSMUSG00000041961.14 ENSMUSG00000041961 ENSMUST00000143746 Znrf3 protein_coding Interval_137958 chr6 83731297 83731557 + 0 NA intron (ENSMUSG00000034777.2, intron 1 of 2) protein_coding-intron (ENSMUSG00000034777.2, intron 1 of 2) 10131 ENSMUSG00000087995.1 ENSMUSG00000087995 ENSMUST00000157370 Gm25054 snRNA Interval_101302 chr2 180255902 180257869 + 0 NA promoter-TSS (ENSMUSG00000039001.12) protein_coding-promoter-TSS (ENSMUSG00000039001.12) -494 ENSMUSG00000039001.12 ENSMUSG00000039001 ENSMUST00000145043 Rps21 protein_coding Interval_161101 chr8 117464571 117465932 + 0 NA Intergenic Intergenic 5986 ENSMUSG00000098483.1 ENSMUSG00000098483 ENSMUST00000183794 Mir7078 miRNA Interval_75757 chr17 71071812 71072127 + 0 NA intron (ENSMUSG00000024049.15, intron 13 of 17) protein_coding-intron (ENSMUSG00000024049.15, intron 13 of 36) 69336 ENSMUSG00000024049.15 ENSMUSG00000024049 ENSMUST00000233790 Myom1 protein_coding Interval_103685 chr3 51631433 51631624 + 0 NA Intergenic Intergenic 5400 ENSMUSG00000104166.1 ENSMUSG00000104166 ENSMUST00000194675 Gm38247 processed_pseudogene Interval_45144 chr13 52650538 52651705 + 0 NA Intergenic Intergenic 67618 ENSMUSG00000021457.14 ENSMUSG00000021457 ENSMUST00000140339 Syk protein_coding Interval_101990 chr3 14588806 14589061 + 0 NA intron (ENSMUSG00000027552.14, intron 3 of 7) protein_coding-intron (ENSMUSG00000027552.14, intron 3 of 7) 10262 ENSMUSG00000027552.14 ENSMUSG00000027552 ENSMUST00000165922 E2f5 protein_coding Interval_108982 chr3 133876045 133876916 + 0 NA intron (ENSMUSG00000097911.2, intron 1 of 2) antisense-intron (ENSMUSG00000097911.2, intron 1 of 2) -57962 ENSMUSG00000104645.1 ENSMUSG00000104645 ENSMUST00000200327 Gm30484 lincRNA Interval_68823 chr16 87393714 87395814 + 0 NA intron (ENSMUSG00000052299.9, intron 24 of 29) protein_coding-intron (ENSMUSG00000052299.9, intron 24 of 29) 24280 ENSMUSG00000065647.1 ENSMUSG00000065647 ENSMUST00000083713 Gm25896 snoRNA Interval_137446 chr6 72501399 72501885 + 0 NA Intergenic Intergenic 18394 ENSMUSG00000052631.15 ENSMUSG00000052631 ENSMUST00000159577 Sh2d6 protein_coding Interval_5535 chr1 89643627 89644293 + 0 NA intron (ENSMUSG00000055013.16, intron 6 of 16) protein_coding-intron (ENSMUSG00000055013.16, intron 6 of 17) 39934 ENSMUSG00000102009.6 ENSMUSG00000102009 ENSMUST00000187011 4933400F21Rik processed_transcript Interval_32728 chr11 110092683 110092950 + 0 NA intron (ENSMUSG00000041828.15, intron 1 of 38) protein_coding-intron (ENSMUSG00000041828.15, intron 1 of 38) -27443 ENSMUSG00000041828.15 ENSMUSG00000041828 ENSMUST00000106662 Abca8a protein_coding Interval_42272 chr13 11477055 11477339 + 0 NA Intergenic Intergenic -44855 ENSMUSG00000113593.1 ENSMUSG00000113593 ENSMUST00000220980 Zp4-ps transcribed_unprocessed_pseudogene Interval_67234 chr16 44629751 44631310 + 0 NA Intergenic Intergenic -71633 ENSMUSG00000022687.12 ENSMUSG00000022687 ENSMUST00000114634 Boc protein_coding Interval_47271 chr13 80291638 80291965 + 0 NA Intergenic Intergenic 130473 ENSMUSG00000114462.1 ENSMUSG00000114462 ENSMUST00000226097 Gm8371 processed_pseudogene Interval_50612 chr14 16566641 16566875 + 0 NA intron (ENSMUSG00000017491.9, intron 1 of 1) protein_coding-intron (ENSMUSG00000017491.9, intron 1 of 7) -8843 ENSMUSG00000114463.1 ENSMUSG00000114463 ENSMUST00000224418 Gm48162 antisense Interval_110612 chr4 4695656 4695961 + 0 NA Intergenic Intergenic -33765 ENSMUSG00000095971.1 ENSMUSG00000095971 ENSMUST00000180325 Gm26436 snoRNA Interval_111592 chr4 24206759 24207126 + 0 NA Intergenic Intergenic -31158 ENSMUSG00000083154.1 ENSMUSG00000083154 ENSMUST00000117711 Gm11892 processed_pseudogene Interval_30248 chr11 91922385 91922903 + 0 NA Intergenic Intergenic -91254 ENSMUSG00000081630.1 ENSMUSG00000081630 ENSMUST00000120660 Gm11498 processed_pseudogene Interval_138818 chr6 92175302 92176082 + 0 NA intron (ENSMUSG00000014551.8, intron 3 of 3) protein_coding-intron (ENSMUSG00000014551.8, intron 1 of 1) 8341 ENSMUSG00000014551.8 ENSMUSG00000014551 ENSMUST00000134132 Mrps25 protein_coding Interval_142173 chr6 137789118 137789447 + 0 NA intron (ENSMUSG00000030225.11, intron 2 of 4) protein_coding-intron (ENSMUSG00000030225.11, intron 2 of 4) 44242 ENSMUSG00000030224.10 ENSMUSG00000030224 ENSMUST00000137235 Strap protein_coding Interval_78548 chr18 14636303 14636658 + 0 NA TTS (ENSMUSG00000037013.17) protein_coding-TTS (ENSMUSG00000037013.17) 926 ENSMUSG00000037013.17 ENSMUSG00000037013 ENSMUST00000234544 Ss18 protein_coding Interval_159022 chr8 88877956 88878438 + 0 NA Intergenic Intergenic -15123 ENSMUSG00000109778.1 ENSMUSG00000109778 ENSMUST00000211407 Gm45504 TEC Interval_155828 chr8 39765908 39767109 + 0 NA Intergenic Intergenic -45542 ENSMUSG00000109789.1 ENSMUSG00000109789 ENSMUST00000210753 Gm2033 processed_pseudogene Interval_90724 chr2 32133906 32134527 + 0 NA Intergenic Intergenic 38061 ENSMUSG00000051373.5 ENSMUSG00000051373 ENSMUST00000146502 Plpp7 protein_coding Interval_82698 chr18 76034579 76035789 + 0 NA intron (ENSMUSG00000044646.15, intron 3 of 5) protein_coding-intron (ENSMUSG00000044646.15, intron 3 of 4) -19507 ENSMUSG00000118311.1 ENSMUSG00000118311 ENSMUST00000238127 1700003O11Rik antisense Interval_49972 chr13 119141881 119142176 + 0 NA Intergenic Intergenic 127576 ENSMUSG00000105411.1 ENSMUSG00000105411 ENSMUST00000199467 Gm44488 miRNA Interval_58273 chr15 31558496 31558763 + 0 NA Intergenic Intergenic -6760 ENSMUSG00000022235.15 ENSMUSG00000022235 ENSMUST00000161088 Cmbl protein_coding Interval_155895 chr8 40805964 40806576 + 0 NA Intergenic Intergenic 12997 ENSMUSG00000046282.7 ENSMUSG00000046282 ENSMUST00000056331 Adam20 protein_coding Interval_130169 chr5 124713023 124714288 + 0 NA promoter-TSS (ENSMUSG00000038023.12) protein_coding-promoter-TSS (ENSMUSG00000038023.12) 3519 ENSMUSG00000088650.1 ENSMUSG00000088650 ENSMUST00000158025 Gm24854 snRNA Interval_165511 chr9 48893996 48894512 + 0 NA Intergenic Intergenic -2197 ENSMUSG00000111570.1 ENSMUSG00000111570 ENSMUST00000216896 Gm32335 antisense Interval_2624 chr1 42589483 42590034 + 0 NA Intergenic Intergenic -61968 ENSMUSG00000104199.1 ENSMUSG00000104199 ENSMUST00000191831 4930420N18Rik TEC Interval_70697 chr17 13584545 13584769 + 0 NA intron (ENSMUSG00000117042.1, intron 1 of 5) lincRNA-intron (ENSMUSG00000117063.1, intron 1 of 4) -50488 ENSMUSG00000095184.1 ENSMUSG00000095184 ENSMUST00000101829 Gm26375 snRNA Interval_30478 chr11 94620623 94621834 + 0 NA Intergenic Intergenic -8586 ENSMUSG00000020869.8 ENSMUSG00000020869 ENSMUST00000138782 Lrrc59 protein_coding Interval_10008 chr1 164966070 164967204 + 0 NA Intergenic Intergenic 5714 ENSMUSG00000101189.1 ENSMUSG00000101189 ENSMUST00000187517 1700029M03Rik lincRNA Interval_91379 chr2 38397008 38398153 + 0 NA Intergenic Intergenic -26422 ENSMUSG00000085950.1 ENSMUSG00000085950 ENSMUST00000146404 Gm13589 lincRNA Interval_18233 chr10 84002247 84002749 + 0 NA intron (ENSMUSG00000111699.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000111699.1, intron 1 of 1) 2362 ENSMUSG00000111699.1 ENSMUSG00000111699 ENSMUST00000215772 C230099D08Rik lincRNA Interval_83801 chr19 4771877 4772120 + 0 NA intron (ENSMUSG00000096370.8, intron 2 of 2) protein_coding-intron (ENSMUSG00000096370.8, intron 2 of 2) -6827 ENSMUSG00000103651.1 ENSMUSG00000103651 ENSMUST00000195512 Gm37206 TEC Interval_69477 chr16 93790409 93791050 + 0 NA intron (ENSMUSG00000022946.10, intron 5 of 6) protein_coding-intron (ENSMUSG00000022946.10, intron 26 of 36) -2060 ENSMUSG00000022946.10 ENSMUSG00000022946 ENSMUST00000228423 Dop1b protein_coding Interval_60976 chr15 78428390 78429387 + 0 NA promoter-TSS (ENSMUSG00000033287.16) protein_coding-promoter-TSS (ENSMUSG00000033287.16) -1163 ENSMUSG00000033287.16 ENSMUSG00000033287 ENSMUST00000162605 Kctd17 protein_coding Interval_32429 chr11 107494433 107494658 + 0 NA intron (ENSMUSG00000020720.13, intron 8 of 10) protein_coding-intron (ENSMUSG00000020720.13, intron 8 of 10) 12629 ENSMUSG00000086442.1 ENSMUSG00000086442 ENSMUST00000138702 Gm11722 sense_intronic Interval_58963 chr15 41029658 41030106 + 0 NA intron (ENSMUSG00000022306.9, intron 5 of 7) protein_coding-intron (ENSMUSG00000022306.9, intron 5 of 7) 31922 ENSMUSG00000115898.1 ENSMUSG00000115898 ENSMUST00000230853 Gm49524 TEC Interval_50524 chr14 14631545 14634220 + 0 NA Intergenic Intergenic -26226 ENSMUSG00000114628.1 ENSMUSG00000114628 ENSMUST00000226083 Gm19018 processed_pseudogene Interval_39424 chr12 87327172 87328432 + 0 NA intron (ENSMUSG00000021036.10, intron 3 of 5) protein_coding-intron (ENSMUSG00000021036.10, intron 9 of 11) 811 ENSMUSG00000021036.10 ENSMUSG00000021036 ENSMUST00000167911 Sptlc2 protein_coding Interval_133574 chr6 6942584 6943436 + 0 NA Intergenic Intergenic 12890 ENSMUSG00000097356.1 ENSMUSG00000097356 ENSMUST00000181534 Gm26774 lincRNA Interval_131701 chr5 139392224 139393099 + 0 NA exon (ENSMUSG00000044197.8, exon 2 of 2) protein_coding-exon (ENSMUSG00000044197.8, exon 2 of 2) -13804 ENSMUSG00000044092.8 ENSMUSG00000044092 ENSMUST00000164078 C130050O18Rik protein_coding Interval_63846 chr16 3963197 3963464 + 0 NA exon (ENSMUSG00000049871.14, exon 3 of 14) protein_coding-exon (ENSMUSG00000049871.14, exon 3 of 14) 2310 ENSMUSG00000049871.14 ENSMUSG00000049871 ENSMUST00000163478 Nlrc3 protein_coding Interval_10598 chr1 172132993 172133776 + 0 NA promoter-TSS (ENSMUSG00000003464.13) protein_coding-promoter-TSS (ENSMUSG00000003464.13) 6628 ENSMUSG00000003464.13 ENSMUSG00000003464 ENSMUST00000133081 Pex19 protein_coding Interval_80952 chr18 50942822 50943526 + 0 NA Intergenic Intergenic -59930 ENSMUSG00000118088.1 ENSMUSG00000118088 ENSMUST00000236182 Gm3815 processed_pseudogene Interval_122354 chr5 21651901 21652777 + 0 NA TTS (ENSMUSG00000038525.16) protein_coding-TTS (ENSMUSG00000038525.16) 6526 ENSMUSG00000038525.16 ENSMUSG00000038525 ENSMUST00000139521 Armc10 protein_coding Interval_53397 chr14 56910114 56910705 + 0 NA intron (ENSMUSG00000021945.9, intron 2 of 23) protein_coding-intron (ENSMUSG00000021945.9, intron 2 of 23) -39145 ENSMUSG00000021945.9 ENSMUSG00000021945 ENSMUST00000226025 Zmym2 protein_coding Interval_165106 chr9 44598802 44599745 + 0 NA exon (ENSMUSG00000111656.1, exon 1 of 1) lincRNA-exon (ENSMUSG00000111656.1, exon 1 of 1) 447 ENSMUSG00000111656.1 ENSMUSG00000111656 ENSMUST00000216193 Gm47232 lincRNA Interval_141850 chr6 134919657 134921293 + 0 NA promoter-TSS (ENSMUSG00000003031.14) protein_coding-promoter-TSS (ENSMUSG00000003031.14) -38 ENSMUSG00000003031.14 ENSMUSG00000003031 ENSMUST00000204807 Cdkn1b protein_coding Interval_90693 chr2 31950057 31951079 + 0 NA promoter-TSS (ENSMUSG00000001864.13) protein_coding-promoter-TSS (ENSMUSG00000001864.13) -11351 ENSMUSG00000001864.13 ENSMUSG00000001864 ENSMUST00000145137 Aif1l protein_coding Interval_169694 chr9 100448939 100449164 + 0 NA Intergenic Intergenic -1271 ENSMUSG00000101287.1 ENSMUSG00000101287 ENSMUST00000187637 Gm28166 lincRNA Interval_28652 chr11 77575993 77576276 + 0 NA intron (ENSMUSG00000017291.13, intron 5 of 19) protein_coding-intron (ENSMUSG00000017291.13, intron 4 of 18) 31681 ENSMUSG00000017291.13 ENSMUSG00000017291 ENSMUST00000058496 Taok1 protein_coding Interval_67963 chr16 61449110 61449320 + 0 NA Intergenic Intergenic -11747 ENSMUSG00000090448.1 ENSMUSG00000090448 ENSMUST00000169031 Gm17192 processed_pseudogene Interval_118747 chr4 133497572 133498889 + 0 NA promoter-TSS (ENSMUSG00000056596.8) protein_coding-promoter-TSS (ENSMUSG00000056596.8) 320 ENSMUSG00000056596.8 ENSMUSG00000056596 ENSMUST00000123169 Trnp1 protein_coding Interval_49049 chr13 107407678 107407872 + 0 NA Intergenic Intergenic 6954 ENSMUSG00000049233.7 ENSMUSG00000049233 ENSMUST00000061241 Apoo-ps processed_pseudogene Interval_142793 chr6 145735228 145735668 + 0 NA Intergenic Intergenic 10825 ENSMUSG00000085658.1 ENSMUSG00000085658 ENSMUST00000144757 Gm15704 lincRNA Interval_16873 chr10 69382633 69383311 + 0 NA Intergenic Intergenic -9660 ENSMUSG00000112509.1 ENSMUSG00000112509 ENSMUST00000219632 Gm47211 processed_pseudogene Interval_159935 chr8 105270860 105271088 + 0 NA intron (ENSMUSG00000033249.10, intron 3 of 11) protein_coding-intron (ENSMUSG00000033249.10, intron 3 of 12) 1100 ENSMUSG00000033249.10 ENSMUSG00000033249 ENSMUST00000173859 Hsf4 protein_coding Interval_82789 chr18 77084575 77084902 + 0 NA intron (ENSMUSG00000025423.16, intron 1 of 13) protein_coding-intron (ENSMUSG00000025423.16, intron 1 of 12) 19493 ENSMUSG00000025423.16 ENSMUSG00000025423 ENSMUST00000168882 Pias2 protein_coding Interval_155682 chr8 36132035 36132381 + 0 NA intron (ENSMUSG00000050271.12, intron 4 of 5) protein_coding-intron (ENSMUSG00000050271.12, intron 4 of 5) -27271 ENSMUSG00000109704.1 ENSMUSG00000109704 ENSMUST00000211253 Gm38414 lincRNA Interval_64947 chr16 17451423 17452630 + 0 NA promoter-TSS (ENSMUSG00000006134.4) protein_coding-promoter-TSS (ENSMUSG00000006134.4) -450 ENSMUSG00000006134.4 ENSMUSG00000006134 ENSMUST00000231629 Crkl protein_coding Interval_20643 chr10 119932951 119933189 + 0 NA intron (ENSMUSG00000034813.18, intron 4 of 23) protein_coding-intron (ENSMUSG00000034813.18, intron 4 of 22) -80793 ENSMUSG00000085418.1 ENSMUSG00000085418 ENSMUST00000135940 Grip1os1 antisense Interval_68539 chr16 78499708 78499950 + 0 NA Intergenic Intergenic 10149 ENSMUSG00000116959.1 ENSMUSG00000116959 ENSMUST00000232118 Gm49604 TEC Interval_93828 chr2 77267228 77268159 + 0 NA intron (ENSMUSG00000042272.17, intron 1 of 11) protein_coding-intron (ENSMUSG00000042272.17, intron 1 of 17) -11270 ENSMUSG00000084087.1 ENSMUSG00000084087 ENSMUST00000117729 Gm13650 processed_pseudogene Interval_35526 chr12 24470761 24472178 + 0 NA Intergenic Intergenic 22187 ENSMUSG00000057160.2 ENSMUSG00000057160 ENSMUST00000073088 Gm16372 processed_pseudogene Interval_99015 chr2 156688403 156689004 + 0 NA intron (ENSMUSG00000061689.15, intron 2 of 12) protein_coding-intron (ENSMUSG00000061689.15, intron 2 of 12) 32206 ENSMUSG00000086638.7 ENSMUSG00000086638 ENSMUST00000130089 4930405A21Rik processed_transcript Interval_90224 chr2 29120990 29121302 + 0 NA Intergenic Intergenic -4740 ENSMUSG00000043535.13 ENSMUSG00000043535 ENSMUST00000145422 Setx protein_coding Interval_173260 chrX 75728522 75730487 + 0 NA intron (ENSMUSG00000087396.7, intron 8 of 10) processed_transcript-intron (ENSMUSG00000087396.7, intron 3 of 3) 5832 ENSMUSG00000081996.1 ENSMUSG00000081996 ENSMUST00000117092 Gm7153 processed_pseudogene Interval_119959 chr4 141120636 141121429 + 0 NA intron (ENSMUSG00000040842.17, intron 1 of 3) protein_coding-intron (ENSMUSG00000040842.17, intron 1 of 2) 5372 ENSMUSG00000097620.7 ENSMUSG00000097620 ENSMUST00000181450 4921514A10Rik antisense Interval_104961 chr3 79296207 79296459 + 0 NA Intergenic Intergenic 8941 ENSMUSG00000102545.1 ENSMUSG00000102545 ENSMUST00000192562 6430573P05Rik lincRNA Interval_124735 chr5 53608404 53608756 + 0 NA intron (ENSMUSG00000039191.12, intron 3 of 12) protein_coding-intron (ENSMUSG00000039191.12, intron 1 of 10) -30052 ENSMUSG00000039191.12 ENSMUSG00000039191 ENSMUST00000202092 Rbpj protein_coding Interval_39725 chr12 95542628 95543124 + 0 NA Intergenic Intergenic -76942 ENSMUSG00000064412.1 ENSMUSG00000064412 ENSMUST00000082478 Gm22246 snRNA Interval_39174 chr12 85613659 85614190 + 0 NA intron (ENSMUSG00000034271.16, intron 2 of 3) protein_coding-intron (ENSMUSG00000034271.16, intron 2 of 3) 11702 ENSMUSG00000034271.16 ENSMUSG00000034271 ENSMUST00000222689 Jdp2 protein_coding Interval_81720 chr18 63888597 63888869 + 0 NA intron (ENSMUSG00000040560.10, intron 20 of 26) protein_coding-intron (ENSMUSG00000040560.10, intron 21 of 27) 10298 ENSMUSG00000118258.1 ENSMUSG00000118258 ENSMUST00000237352 Gm19076 processed_pseudogene Interval_146841 chr7 53030569 53031535 + 0 NA Intergenic Intergenic 103982 ENSMUSG00000070203.1 ENSMUSG00000070203 ENSMUST00000093693 Gm22444 snRNA Interval_75678 chr17 70592277 70592570 + 0 NA intron (ENSMUSG00000003279.17, intron 1 of 4) protein_coding-intron (ENSMUSG00000003279.17, intron 6 of 14) 163159 ENSMUSG00000097282.1 ENSMUSG00000097282 ENSMUST00000181546 5031415H12Rik antisense Interval_161524 chr8 120959625 120960145 + 0 NA intron (ENSMUSG00000092329.1, intron 1 of 15) protein_coding-intron (ENSMUSG00000092329.1, intron 1 of 15) -43042 ENSMUSG00000101886.1 ENSMUSG00000101886 ENSMUST00000187913 Gm28324 lincRNA Interval_62918 chr15 97907593 97909078 + 0 NA promoter-TSS (ENSMUSG00000022479.15) protein_coding-promoter-TSS (ENSMUSG00000022479.15) 2295 ENSMUSG00000022479.15 ENSMUSG00000022479 ENSMUST00000173611 Vdr protein_coding Interval_106968 chr3 102246111 102246383 + 0 NA Intergenic Intergenic -3422 ENSMUSG00000105151.1 ENSMUSG00000105151 ENSMUST00000198375 Gm43241 lincRNA Interval_454 chr1 5522475 5522887 + 0 NA Intergenic Intergenic -65812 ENSMUSG00000025905.14 ENSMUSG00000025905 ENSMUST00000159083 Oprk1 protein_coding Interval_10896 chr1 176712177 176712825 + 0 NA Intergenic Intergenic 11884 ENSMUSG00000087875.1 ENSMUSG00000087875 ENSMUST00000157250 Gm26104 snRNA Interval_3361 chr1 57421097 57421273 + 0 NA Intergenic Intergenic 1188 ENSMUSG00000077776.1 ENSMUSG00000077776 ENSMUST00000104588 Gm22371 snoRNA Interval_93064 chr2 69895734 69895901 + 0 NA Intergenic Intergenic 10089 ENSMUSG00000085735.1 ENSMUSG00000085735 ENSMUST00000129114 Mettl5os antisense Interval_105139 chr3 82381994 82382970 + 0 NA TTS (ENSMUSG00000033900.13) protein_coding-TTS (ENSMUSG00000033900.13) 2409 ENSMUSG00000033900.13 ENSMUSG00000033900 ENSMUST00000195793 Map9 protein_coding Interval_86302 chr19 38507108 38508539 + 0 NA intron (ENSMUSG00000024998.17, intron 2 of 2) protein_coding-intron (ENSMUSG00000024998.17, intron 2 of 2) -34621 ENSMUSG00000088940.1 ENSMUSG00000088940 ENSMUST00000158315 Gm24930 misc_RNA Interval_64068 chr16 7084157 7084529 + 0 NA intron (ENSMUSG00000008658.16, intron 1 of 12) protein_coding-intron (ENSMUSG00000008658.16, intron 3 of 14) -109404 ENSMUSG00000008658.16 ENSMUSG00000008658 ENSMUST00000231031 Rbfox1 protein_coding Interval_62893 chr15 97764917 97766425 + 0 NA promoter-TSS (ENSMUSG00000087397.1) antisense-promoter-TSS (ENSMUSG00000087397.1) -878 ENSMUSG00000087397.1 ENSMUSG00000087397 ENSMUST00000124374 Rapgef3os2 antisense Interval_7051 chr1 123856649 123857652 + 0 NA intron (ENSMUSG00000036815.17, intron 2 of 25) protein_coding-intron (ENSMUSG00000036815.17, intron 2 of 25) -26991 ENSMUSG00000102940.1 ENSMUSG00000102940 ENSMUST00000195556 Gm37551 TEC Interval_141528 chr6 128887265 128889157 + 0 NA intron (ENSMUSG00000030365.11, intron 2 of 6) protein_coding-intron (ENSMUSG00000030365.11, intron 1 of 5) 613 ENSMUSG00000030365.11 ENSMUSG00000030365 ENSMUST00000160867 Clec2i protein_coding Interval_93926 chr2 79453914 79455069 + 0 NA exon (ENSMUSG00000034701.9, exon 2 of 2) protein_coding-exon (ENSMUSG00000034701.9, exon 2 of 2) 2260 ENSMUSG00000034701.9 ENSMUSG00000034701 ENSMUST00000041099 Neurod1 protein_coding Interval_18439 chr10 85957111 85957924 + 0 NA intron (ENSMUSG00000001783.3, intron 1 of 11) protein_coding-intron (ENSMUSG00000001783.3, intron 1 of 11) -1738 ENSMUSG00000001783.3 ENSMUSG00000001783 ENSMUST00000139413 Rtcb protein_coding Interval_93386 chr2 72619269 72619888 + 0 NA Intergenic Intergenic -12692 ENSMUSG00000083279.1 ENSMUSG00000083279 ENSMUST00000118184 Pex13-ps processed_pseudogene Interval_150989 chr7 117426578 117427191 + 0 NA intron (ENSMUSG00000030657.11, intron 1 of 6) protein_coding-intron (ENSMUSG00000030657.11, intron 1 of 11) 45022 ENSMUSG00000108693.1 ENSMUSG00000108693 ENSMUST00000205957 Gm45153 TEC Interval_160964 chr8 116480671 116481327 + 0 NA Intergenic Intergenic -8187 ENSMUSG00000110700.1 ENSMUSG00000110700 ENSMUST00000212720 Gm5357 processed_pseudogene Interval_159339 chr8 93849841 93850370 + 0 NA intron (ENSMUSG00000031748.16, intron 2 of 7) protein_coding-intron (ENSMUSG00000031748.16, intron 2 of 8) -36383 ENSMUSG00000097520.2 ENSMUSG00000097520 ENSMUST00000212638 4930488L21Rik antisense Interval_37175 chr12 59188406 59188625 + 0 NA TTS (ENSMUSG00000021000.17) protein_coding-TTS (ENSMUSG00000021000.17) 15921 ENSMUSG00000035329.7 ENSMUSG00000035329 ENSMUST00000161351 Fbxo33 protein_coding Interval_89741 chr2 25162841 25164053 + 0 NA intron (ENSMUSG00000118563.1, intron 13 of 13) unitary_pseudogene-intron (ENSMUSG00000118563.1, intron 13 of 13) -17311 ENSMUSG00000078202.3 ENSMUSG00000078202 ENSMUST00000104999 Nrarp protein_coding Interval_129684 chr5 121726276 121726633 + 0 NA intron (ENSMUSG00000089729.1, intron 1 of 1) protein_coding-intron (ENSMUSG00000042605.16, intron 1 of 24) 949 ENSMUSG00000089729.1 ENSMUSG00000089729 ENSMUST00000162348 Gm16552 antisense Interval_63883 chr16 4244677 4245575 + 0 NA Intergenic Intergenic 14825 ENSMUSG00000089645.3 ENSMUSG00000089645 ENSMUST00000161633 Gm5766 transcribed_processed_pseudogene Interval_67529 chr16 50363635 50364916 + 0 NA intron (ENSMUSG00000022641.15, intron 2 of 16) protein_coding-intron (ENSMUSG00000022641.15, intron 2 of 15) 68034 ENSMUSG00000022641.15 ENSMUSG00000022641 ENSMUST00000130210 Bbx protein_coding Interval_63094 chr15 99037965 99038202 + 0 NA TTS (ENSMUSG00000043091.9) protein_coding-TTS (ENSMUSG00000043091.9) 7762 ENSMUSG00000043091.9 ENSMUSG00000043091 ENSMUST00000230447 Tuba1c protein_coding Interval_158688 chr8 85276423 85276700 + 0 NA intron (ENSMUSG00000031696.9, intron 10 of 16) protein_coding-intron (ENSMUSG00000031696.9, intron 10 of 16) 22905 ENSMUSG00000031696.9 ENSMUSG00000031696 ENSMUST00000211154 Vps35 protein_coding Interval_108948 chr3 133549813 133550326 + 0 NA intron (ENSMUSG00000105085.1, intron 1 of 2) antisense-intron (ENSMUSG00000105085.1, intron 1 of 2) 4972 ENSMUSG00000105085.1 ENSMUSG00000105085 ENSMUST00000199268 Gm42567 antisense Interval_72355 chr17 29385198 29386271 + 0 NA Intergenic Intergenic 12383 ENSMUSG00000024013.15 ENSMUSG00000024013 ENSMUST00000144616 Fgd2 protein_coding Interval_161737 chr8 122442932 122444701 + 0 NA promoter-TSS (ENSMUSG00000006517.5) protein_coding-promoter-TSS (ENSMUSG00000006517.5) -420 ENSMUSG00000006517.5 ENSMUSG00000006517 ENSMUST00000006692 Mvd protein_coding Interval_50256 chr14 11492038 11492235 + 0 NA promoter-TSS (ENSMUSG00000114850.1) processed_pseudogene-promoter-TSS (ENSMUSG00000114850.1) -478 ENSMUSG00000114850.1 ENSMUSG00000114850 ENSMUST00000224598 Gm8438 processed_pseudogene Interval_166447 chr9 59565413 59566271 + 0 NA TTS (ENSMUSG00000025232.8) protein_coding-TTS (ENSMUSG00000025232.8) 26302 ENSMUSG00000025232.8 ENSMUSG00000025232 ENSMUST00000026262 Hexa protein_coding Interval_153455 chr7 144901621 144902333 + 0 NA intron (ENSMUSG00000108977.1, intron 2 of 2) antisense-intron (ENSMUSG00000108977.1, intron 2 of 2) -4516 ENSMUSG00000096999.1 ENSMUSG00000096999 ENSMUST00000180930 Gm26793 antisense Interval_79147 chr18 24993723 24994189 + 0 NA intron (ENSMUSG00000034295.10, intron 8 of 24) protein_coding-intron (ENSMUSG00000034295.10, intron 8 of 26) 174738 ENSMUSG00000024269.11 ENSMUSG00000024269 ENSMUST00000115817 Tpgs2 protein_coding Interval_108042 chr3 120979903 120980127 + 0 NA Intergenic Intergenic 40761 ENSMUSG00000105243.1 ENSMUSG00000105243 ENSMUST00000198123 Gm43444 TEC Interval_66425 chr16 33781417 33782463 + 0 NA intron (ENSMUSG00000090214.8, intron 2 of 2) antisense-intron (ENSMUSG00000090214.8, intron 2 of 2) -12097 ENSMUSG00000022824.12 ENSMUSG00000022824 ENSMUST00000023520 Muc13 protein_coding Interval_133737 chr6 10870407 10870813 + 0 NA Intergenic Intergenic -11819 ENSMUSG00000108078.1 ENSMUSG00000108078 ENSMUST00000204475 Gm8744 processed_pseudogene Interval_19150 chr10 95145496 95147366 + 0 NA promoter-TSS (ENSMUSG00000112481.1) lincRNA-promoter-TSS (ENSMUSG00000112481.1) -606 ENSMUSG00000112481.1 ENSMUSG00000112481 ENSMUST00000220248 Gm29684 lincRNA Interval_36199 chr12 38843901 38844214 + 0 NA intron (ENSMUSG00000004151.17, intron 1 of 5) protein_coding-intron (ENSMUSG00000004151.17, intron 8 of 12) 24514 ENSMUSG00000004151.17 ENSMUSG00000004151 ENSMUST00000161591 Etv1 protein_coding Interval_103218 chr3 37035503 37035878 + 0 NA intron (ENSMUSG00000037270.18, intron 70 of 83) protein_coding-intron (ENSMUSG00000037270.18, intron 72 of 85) 24340 ENSMUSG00000086090.1 ENSMUSG00000086090 ENSMUST00000139667 Gm12531 antisense Interval_108990 chr3 134134602 134134789 + 0 NA intron (ENSMUSG00000097911.2, intron 1 of 2) antisense-intron (ENSMUSG00000097911.2, intron 1 of 2) 12413 ENSMUSG00000106130.1 ENSMUSG00000106130 ENSMUST00000197960 Gm44361 miRNA Interval_58900 chr15 39834757 39835887 + 0 NA intron (ENSMUSG00000022304.13, intron 4 of 9) protein_coding-intron (ENSMUSG00000022304.13, intron 4 of 9) 38277 ENSMUSG00000087695.1 ENSMUSG00000087695 ENSMUST00000147378 Gm16291 antisense Interval_13131 chr10 12088488 12089074 + 0 NA Intergenic Intergenic -57341 ENSMUSG00000112775.1 ENSMUSG00000112775 ENSMUST00000220015 Gm48722 lincRNA Interval_148584 chr7 82828116 82828652 + 0 NA Intergenic Intergenic -23215 ENSMUSG00000030636.15 ENSMUSG00000030636 ENSMUST00000032872 1700010L04Rik lincRNA Interval_124065 chr5 37966103 37968109 + 0 NA Intergenic Intergenic -16587 ENSMUSG00000107126.1 ENSMUSG00000107126 ENSMUST00000201470 Gm40289 lincRNA Interval_38447 chr12 79092600 79092875 + 0 NA TTS (ENSMUSG00000112489.1) lincRNA-TTS (ENSMUSG00000112489.1) -3092 ENSMUSG00000021120.11 ENSMUSG00000021120 ENSMUST00000217979 Pigh protein_coding Interval_74252 chr17 47736930 47739981 + 0 NA promoter-TSS (ENSMUSG00000023990.18) protein_coding-promoter-TSS (ENSMUSG00000023990.18) 11611 ENSMUSG00000023987.14 ENSMUSG00000023987 ENSMUST00000144955 Pgc protein_coding Interval_80763 chr18 46913163 46915313 + 0 NA Intergenic Intergenic -5313 ENSMUSG00000117630.1 ENSMUSG00000117630 ENSMUST00000234575 Gm49973 processed_pseudogene Interval_89060 chr2 15149417 15149680 + 0 NA Intergenic Intergenic 21948 ENSMUSG00000083860.2 ENSMUSG00000083860 ENSMUST00000118938 Gm13313 processed_pseudogene Interval_56885 chr14 122825105 122825605 + 0 NA intron (ENSMUSG00000041625.15, intron 3 of 3) protein_coding-intron (ENSMUSG00000041650.15, intron 21 of 23) -87720 ENSMUSG00000075463.3 ENSMUSG00000075463 ENSMUST00000162218 4930594M22Rik processed_transcript Interval_110860 chr4 9096982 9098064 + 0 NA Intergenic Intergenic -112480 ENSMUSG00000075958.1 ENSMUSG00000075958 ENSMUST00000082782 Gm23423 snRNA Interval_28558 chr11 76705964 76706316 + 0 NA Intergenic Intergenic 26332 ENSMUSG00000046275.2 ENSMUSG00000046275 ENSMUST00000062024 Trarg1 protein_coding Interval_153565 chr8 3445082 3445510 + 0 NA intron (ENSMUSG00000004568.13, intron 19 of 28) protein_coding-intron (ENSMUSG00000004568.13, intron 10 of 19) -12743 ENSMUSG00000108955.1 ENSMUSG00000108955 ENSMUST00000207266 Gm44775 TEC Interval_91324 chr2 37780112 37780795 + 0 NA intron (ENSMUSG00000035403.10, intron 1 of 12) protein_coding-intron (ENSMUSG00000035403.10, intron 1 of 12) -10718 ENSMUSG00000035403.10 ENSMUSG00000035403 ENSMUST00000137693 Crb2 protein_coding Interval_67154 chr16 43968628 43969384 + 0 NA TTS (ENSMUSG00000036304.14) protein_coding-TTS (ENSMUSG00000036304.14) 10156 ENSMUSG00000036304.14 ENSMUSG00000036304 ENSMUST00000165648 Zdhhc23 protein_coding Interval_31752 chr11 102638762 102639396 + 0 NA Intergenic Intergenic -14663 ENSMUSG00000086283.7 ENSMUSG00000086283 ENSMUST00000147541 2810433D01Rik lincRNA Interval_132712 chr5 147325925 147326377 + 0 NA exon (ENSMUSG00000106939.1, exon 1 of 1) processed_pseudogene-exon (ENSMUSG00000106939.1, exon 1 of 1) 183 ENSMUSG00000106939.1 ENSMUSG00000106939 ENSMUST00000201667 Gm29778 processed_pseudogene Interval_162206 chr8 125955480 125956086 + 0 NA Intergenic Intergenic -39653 ENSMUSG00000033998.9 ENSMUSG00000033998 ENSMUST00000212831 Kcnk1 protein_coding Interval_7601 chr1 132442332 132442629 + 0 NA intron (ENSMUSG00000042046.15, intron 2 of 11) protein_coding-intron (ENSMUSG00000042046.15, intron 2 of 12) -19929 ENSMUSG00000042046.15 ENSMUSG00000042046 ENSMUST00000191494 Dstyk protein_coding Interval_161706 chr8 122190255 122190558 + 0 NA intron (ENSMUSG00000092329.1, intron 1 of 15) protein_coding-intron (ENSMUSG00000092329.1, intron 1 of 15) -68214 ENSMUSG00000043903.4 ENSMUSG00000043903 ENSMUST00000055537 Zfp469 protein_coding Interval_155950 chr8 41247935 41248285 + 0 NA intron (ENSMUSG00000031592.10, intron 1 of 38) protein_coding-intron (ENSMUSG00000031592.10, intron 1 of 37) 8332 ENSMUSG00000031592.10 ENSMUSG00000031592 ENSMUST00000211247 Pcm1 protein_coding Interval_131710 chr5 139444234 139444429 + 0 NA TTS (ENSMUSG00000095016.1) snRNA-TTS (ENSMUSG00000095016.1) 732 ENSMUSG00000095016.1 ENSMUSG00000095016 ENSMUST00000177923 Gm26285 snRNA Interval_162532 chr9 3996551 3997394 + 0 NA Intergenic Intergenic -216950 ENSMUSG00000110691.1 ENSMUSG00000110691 ENSMUST00000211927 Gm5363 processed_pseudogene Interval_94525 chr2 91931409 91933661 + 0 NA promoter-TSS (ENSMUSG00000027239.14) protein_coding-promoter-TSS (ENSMUSG00000027239.14) -847 ENSMUSG00000027239.14 ENSMUSG00000027239 ENSMUST00000090602 Mdk protein_coding Interval_98430 chr2 152312832 152313141 + 0 NA exon (ENSMUSG00000027465.13, exon 8 of 8) protein_coding-exon (ENSMUSG00000027465.13, exon 8 of 8) 10512 ENSMUSG00000027466.15 ENSMUSG00000027466 ENSMUST00000129590 Rbck1 protein_coding Interval_102963 chr3 33815899 33816528 + 0 NA intron (ENSMUSG00000027676.11, intron 14 of 19) protein_coding-intron (ENSMUSG00000027676.11, intron 14 of 19) -1043 ENSMUSG00000105286.1 ENSMUSG00000105286 ENSMUST00000197317 Gm43140 antisense Interval_94064 chr2 83413260 83413521 + 0 NA Intergenic Intergenic -15312 ENSMUSG00000083389.1 ENSMUSG00000083389 ENSMUST00000117925 Gm13681 processed_pseudogene Interval_21470 chr10 128777605 128777842 + 0 NA promoter-TSS (ENSMUSG00000045055.5) processed_pseudogene-promoter-TSS (ENSMUSG00000045055.5) -473 ENSMUSG00000045055.5 ENSMUSG00000045055 ENSMUST00000059546 Rpsa-ps2 processed_pseudogene Interval_65670 chr16 25018096 25018317 + 0 NA Intergenic Intergenic -41433 ENSMUSG00000096960.1 ENSMUSG00000096960 ENSMUST00000181655 A230028O05Rik lincRNA Interval_169310 chr9 96306961 96307358 + 0 NA exon (ENSMUSG00000032411.15, exon 1 of 1) protein_coding-exon (ENSMUSG00000032411.15, exon 1 of 1) 18802 ENSMUSG00000032411.15 ENSMUSG00000032411 ENSMUST00000191133 Tfdp2 protein_coding Interval_10996 chr1 177845980 177846621 + 0 NA intron (ENSMUSG00000102483.2, intron 6 of 21) protein_coding-intron (ENSMUSG00000102483.2, intron 6 of 21) 37869 ENSMUSG00000102483.2 ENSMUSG00000102483 ENSMUST00000194528 Catspere1 protein_coding Interval_128770 chr5 115165536 115166545 + 0 NA Intergenic Intergenic -14994 ENSMUSG00000048578.11 ENSMUSG00000048578 ENSMUST00000124678 Mlec protein_coding Interval_48194 chr13 97099173 97100106 + 0 NA promoter-TSS (ENSMUSG00000057762.6) protein_coding-promoter-TSS (ENSMUSG00000057762.6) -402 ENSMUSG00000057762.6 ENSMUSG00000057762 ENSMUST00000071118 Gm6169 protein_coding Interval_38006 chr12 73831775 73832094 + 0 NA Intergenic Intergenic 9347 ENSMUSG00000113699.1 ENSMUSG00000113699 ENSMUST00000222647 Gm48823 lincRNA Interval_14961 chr10 41476121 41478165 + 0 NA promoter-TSS (ENSMUSG00000019823.17) protein_coding-promoter-TSS (ENSMUSG00000019823.17) 64 ENSMUSG00000019823.17 ENSMUSG00000019823 ENSMUST00000138657 Mical1 protein_coding Interval_144624 chr7 27195350 27196752 + 0 NA promoter-TSS (ENSMUSG00000061479.15) protein_coding-promoter-TSS (ENSMUSG00000061479.15) 102 ENSMUSG00000061479.15 ENSMUSG00000061479 ENSMUST00000206439 Snrpa protein_coding Interval_144764 chr7 28093307 28094077 + 0 NA exon (ENSMUSG00000047730.17, exon 8 of 20) protein_coding-exon (ENSMUSG00000047730.17, exon 8 of 20) -20135 ENSMUSG00000047730.17 ENSMUSG00000047730 ENSMUST00000131090 Fcgbp protein_coding Interval_27197 chr11 64010637 64011421 + 0 NA intron (ENSMUSG00000042148.8, intron 4 of 6) protein_coding-intron (ENSMUSG00000042148.8, intron 4 of 6) -1586 ENSMUSG00000084884.1 ENSMUSG00000084884 ENSMUST00000130860 Gm12289 antisense Interval_42456 chr13 13746699 13746918 + 0 NA promoter-TSS (ENSMUSG00000019726.12) protein_coding-promoter-TSS (ENSMUSG00000019726.12) -42536 ENSMUSG00000087898.1 ENSMUSG00000087898 ENSMUST00000157273 Gm25271 misc_RNA Interval_88889 chr2 12139048 12139759 + 0 NA intron (ENSMUSG00000026768.10, intron 27 of 30) protein_coding-intron (ENSMUSG00000026768.10, intron 26 of 29) -9661 ENSMUSG00000104174.1 ENSMUSG00000104174 ENSMUST00000192947 Gm37701 TEC Interval_118562 chr4 132514935 132516695 + 0 NA Intergenic Intergenic -5314 ENSMUSG00000028893.8 ENSMUSG00000028893 ENSMUST00000030724 Sesn2 protein_coding Interval_134629 chr6 30047343 30049036 + 0 NA promoter-TSS (ENSMUSG00000058440.14) protein_coding-promoter-TSS (ENSMUSG00000058440.14) -41706 ENSMUSG00000058440.14 ENSMUSG00000058440 ENSMUST00000132866 Nrf1 protein_coding Interval_91762 chr2 49358768 49359075 + 0 NA Intergenic Intergenic -30770 ENSMUSG00000084177.1 ENSMUSG00000084177 ENSMUST00000121639 Gm13508 processed_pseudogene Interval_139372 chr6 99573404 99573764 + 0 NA intron (ENSMUSG00000030068.4, intron 1 of 1) protein_coding-intron (ENSMUSG00000030068.4, intron 3 of 5) -2307 ENSMUSG00000084547.1 ENSMUSG00000084547 ENSMUST00000122598 Gm24936 misc_RNA Interval_110757 chr4 8106866 8107427 + 0 NA Intergenic Intergenic -11474 ENSMUSG00000083068.1 ENSMUSG00000083068 ENSMUST00000120050 Gm11800 processed_pseudogene Interval_29714 chr11 86336578 86336785 + 0 NA intron (ENSMUSG00000034297.14, intron 3 of 29) protein_coding-intron (ENSMUSG00000034297.14, intron 3 of 29) 3475 ENSMUSG00000088230.1 ENSMUSG00000088230 ENSMUST00000157605 Gm25427 misc_RNA Interval_130197 chr5 124873380 124874035 + 0 NA promoter-TSS (ENSMUSG00000079215.8) protein_coding-promoter-TSS (ENSMUSG00000079215.8) -445 ENSMUSG00000079215.8 ENSMUSG00000079215 ENSMUST00000134473 Zfp664 protein_coding Interval_155805 chr8 38912992 38913501 + 0 NA Intergenic Intergenic 69789 ENSMUSG00000077445.1 ENSMUSG00000077445 ENSMUST00000104257 Gm23128 snoRNA Interval_102859 chr3 32341053 32341924 + 0 NA exon (ENSMUSG00000027663.12, exon 6 of 6) protein_coding-exon (ENSMUSG00000027663.12, exon 6 of 6) 24526 ENSMUSG00000027663.12 ENSMUSG00000027663 ENSMUST00000195055 Zmat3 protein_coding Interval_67247 chr16 44739631 44739852 + 0 NA intron (ENSMUSG00000022668.10, intron 5 of 5) protein_coding-intron (ENSMUSG00000022668.10, intron 5 of 5) 6622 ENSMUSG00000022668.10 ENSMUSG00000022668 ENSMUST00000162479 Gtpbp8 protein_coding Interval_46743 chr13 69809552 69810878 + 0 NA exon (ENSMUSG00000021598.9, exon 1 of 2) protein_coding-exon (ENSMUSG00000021598.9, exon 1 of 2) 7820 ENSMUSG00000021598.9 ENSMUSG00000021598 ENSMUST00000220649 Med10 protein_coding Interval_122339 chr5 21516678 21518128 + 0 NA intron (ENSMUSG00000048520.16, intron 17 of 18) protein_coding-intron (ENSMUSG00000048520.16, intron 16 of 19) -26156 ENSMUSG00000039883.5 ENSMUSG00000039883 ENSMUST00000035651 Lrrc17 protein_coding Interval_117745 chr4 125977736 125978265 + 0 NA Intergenic Intergenic -46726 ENSMUSG00000028859.14 ENSMUSG00000028859 ENSMUST00000140426 Csf3r protein_coding Interval_108572 chr3 129207755 129208246 + 0 NA intron (ENSMUSG00000028023.16, intron 3 of 3) protein_coding-intron (ENSMUSG00000028023.16, intron 3 of 3) -2006 ENSMUSG00000098515.1 ENSMUSG00000098515 ENSMUST00000184283 Gm27195 sense_intronic Interval_56410 chr14 118591336 118592519 + 0 NA TTS (ENSMUSG00000098433.1) miRNA-TTS (ENSMUSG00000098433.1) 545 ENSMUSG00000098433.1 ENSMUSG00000098433 ENSMUST00000184391 Mir6391 miRNA Interval_10110 chr1 165867952 165868416 + 0 NA TTS (ENSMUSG00000005763.15) protein_coding-TTS (ENSMUSG00000005763.15) 11976 ENSMUSG00000026565.18 ENSMUSG00000026565 ENSMUST00000176800 Pou2f1 protein_coding Interval_43590 chr13 33934810 33936410 + 0 NA promoter-TSS (ENSMUSG00000085457.3) antisense-promoter-TSS (ENSMUSG00000085457.3) 368 ENSMUSG00000060147.15 ENSMUSG00000060147 ENSMUST00000170620 Serpinb6a protein_coding Interval_135552 chr6 40352501 40353566 + 0 NA TTS (ENSMUSG00000029916.11) protein_coding-TTS (ENSMUSG00000029916.11) 27525 ENSMUSG00000029916.11 ENSMUSG00000029916 ENSMUST00000201751 Agk protein_coding Interval_158018 chr8 78067691 78069593 + 0 NA Intergenic Intergenic 24632 ENSMUSG00000110382.1 ENSMUSG00000110382 ENSMUST00000209933 Gm29895 lincRNA Interval_130432 chr5 127587643 127588190 + 0 NA Intergenic Intergenic 9166 ENSMUSG00000106015.1 ENSMUSG00000106015 ENSMUST00000200582 Gm42980 lincRNA Interval_48252 chr13 97452106 97453338 + 0 NA intron (ENSMUSG00000078952.9, intron 1 of 1) lincRNA-intron (ENSMUSG00000078952.9, intron 1 of 1) 6355 ENSMUSG00000098238.1 ENSMUSG00000098238 ENSMUST00000183250 Gm8756 processed_pseudogene Interval_73276 chr17 35934459 35936004 + 0 NA TTS (ENSMUSG00000049832.6) processed_pseudogene-TTS (ENSMUSG00000049832.6) 719 ENSMUSG00000049832.6 ENSMUSG00000049832 ENSMUST00000173786 Rbx1-ps processed_pseudogene Interval_8897 chr1 151899771 151900874 + 0 NA intron (ENSMUSG00000032666.16, intron 5 of 6) protein_coding-intron (ENSMUSG00000032666.16, intron 5 of 5) 24903 ENSMUSG00000100685.1 ENSMUSG00000100685 ENSMUST00000187716 Gm28610 antisense Interval_10069 chr1 165590962 165591170 + 0 NA Intergenic Intergenic 5883 ENSMUSG00000104474.1 ENSMUSG00000104474 ENSMUST00000191944 Gm38210 TEC Interval_100439 chr2 169023603 169023916 + 0 NA Intergenic Intergenic 3734 ENSMUSG00000052368.2 ENSMUSG00000052368 ENSMUST00000063891 Gm9873 lincRNA Interval_142132 chr6 137502956 137505469 + 0 NA intron (ENSMUSG00000015766.14, intron 16 of 17) protein_coding-intron (ENSMUSG00000015766.14, intron 16 of 21) 66547 ENSMUSG00000015766.14 ENSMUSG00000015766 ENSMUST00000205037 Eps8 protein_coding Interval_166072 chr9 56303185 56303429 + 0 NA intron (ENSMUSG00000074305.9, intron 2 of 2) protein_coding-intron (ENSMUSG00000074305.9, intron 3 of 6) 39708 ENSMUSG00000102617.1 ENSMUSG00000102617 ENSMUST00000192330 Gm37842 TEC Interval_88137 chr19 59479893 59480228 + 0 NA Intergenic Intergenic -13076 ENSMUSG00000100119.1 ENSMUSG00000100119 ENSMUST00000190204 2700089I24Rik lincRNA Interval_34889 chr12 13001884 13002924 + 0 NA Intergenic Intergenic 15087 ENSMUSG00000113220.1 ENSMUSG00000113220 ENSMUST00000221590 Gm35208 lincRNA Interval_114318 chr4 72629558 72629891 + 0 NA Intergenic Intergenic 87058 ENSMUSG00000083372.1 ENSMUSG00000083372 ENSMUST00000117763 Gm11235 processed_pseudogene Interval_160429 chr8 109438532 109438985 + 0 NA Intergenic Intergenic -13014 ENSMUSG00000092821.1 ENSMUSG00000092821 ENSMUST00000175080 Gm23163 miRNA Interval_143425 chr7 6688666 6689348 + 0 NA promoter-TSS (ENSMUSG00000002266.17) protein_coding-promoter-TSS (ENSMUSG00000002266.17) -335 ENSMUSG00000002266.17 ENSMUSG00000002266 ENSMUST00000213399 Zim1 protein_coding Interval_68949 chr16 89631601 89632483 + 0 NA TTS (ENSMUSG00000116651.1) processed_pseudogene-TTS (ENSMUSG00000116651.1) 2098 ENSMUSG00000116651.1 ENSMUSG00000116651 ENSMUST00000232201 Gm17844 processed_pseudogene Interval_56973 chr14 124414390 124415124 + 0 NA intron (ENSMUSG00000025551.13, intron 1 of 4) protein_coding-intron (ENSMUSG00000025551.13, intron 1 of 4) 16066 ENSMUSG00000115472.1 ENSMUSG00000115472 ENSMUST00000228023 Gm49070 processed_pseudogene Interval_38920 chr12 83811174 83812427 + 0 NA intron (ENSMUSG00000021224.15, intron 3 of 3) protein_coding-intron (ENSMUSG00000021224.15, intron 3 of 8) -11655 ENSMUSG00000114150.1 ENSMUSG00000114150 ENSMUST00000221695 Gm46367 processed_transcript Interval_120600 chr4 149615025 149615266 + 0 NA intron (ENSMUSG00000039953.13, intron 2 of 17) protein_coding-intron (ENSMUSG00000039953.13, intron 2 of 18) -11985 ENSMUSG00000039953.13 ENSMUSG00000039953 ENSMUST00000151895 Clstn1 protein_coding Interval_108838 chr3 132398998 132399370 + 0 NA Intergenic Intergenic 46364 ENSMUSG00000106280.1 ENSMUSG00000106280 ENSMUST00000198028 Gm42880 lincRNA Interval_152121 chr7 129648796 129649515 + 0 NA Intergenic Intergenic -9773 ENSMUSG00000108580.1 ENSMUSG00000108580 ENSMUST00000205844 Gm39094 lincRNA Interval_29858 chr11 87358001 87359514 + 0 NA promoter-TSS (ENSMUSG00000046442.4) protein_coding-promoter-TSS (ENSMUSG00000046442.4) -120 ENSMUSG00000046442.4 ENSMUSG00000046442 ENSMUST00000155154 Ppm1e protein_coding Interval_96357 chr2 121957835 121959702 + 0 NA intron (ENSMUSG00000033411.16, intron 1 of 12) protein_coding-intron (ENSMUSG00000033411.16, intron 1 of 12) 2288 ENSMUSG00000033411.16 ENSMUSG00000033411 ENSMUST00000127265 Ctdspl2 protein_coding Interval_40534 chr12 105562673 105564637 + 0 NA intron (ENSMUSG00000021070.6, intron 1 of 2) protein_coding-intron (ENSMUSG00000021070.6, intron 1 of 2) 429 ENSMUSG00000021070.6 ENSMUSG00000021070 ENSMUST00000001652 Bdkrb2 protein_coding Interval_28148 chr11 73198735 73200115 + 0 NA promoter-TSS (ENSMUSG00000005949.9) protein_coding-promoter-TSS (ENSMUSG00000005949.9) -35 ENSMUSG00000005951.13 ENSMUSG00000005951 ENSMUST00000006105 Shpk protein_coding Interval_32748 chr11 110315851 110316556 + 0 NA intron (ENSMUSG00000018800.14, intron 5 of 8) protein_coding-intron (ENSMUSG00000018800.14, intron 6 of 38) 21513 ENSMUSG00000018800.14 ENSMUSG00000018800 ENSMUST00000148984 Abca5 protein_coding Interval_152777 chr7 137461493 137461938 + 0 NA intron (ENSMUSG00000031068.8, intron 7 of 9) protein_coding-intron (ENSMUSG00000031068.8, intron 7 of 10) 24050 ENSMUSG00000031068.8 ENSMUSG00000031068 ENSMUST00000211598 Glrx3 protein_coding Interval_148073 chr7 79052574 79054553 + 0 NA promoter-TSS (ENSMUSG00000030607.7) protein_coding-promoter-TSS (ENSMUSG00000030607.7) -240 ENSMUSG00000097441.1 ENSMUSG00000097441 ENSMUST00000180546 Gm26633 antisense Interval_388 chr1 4818917 4820032 + 0 NA intron (ENSMUSG00000025903.14, intron 2 of 7) protein_coding-intron (ENSMUSG00000025903.14, intron 2 of 8) 11582 ENSMUSG00000104217.1 ENSMUSG00000104217 ENSMUST00000155020 Gm37988 protein_coding Interval_130550 chr5 128739168 128740149 + 0 NA intron (ENSMUSG00000029423.10, intron 4 of 13) protein_coding-intron (ENSMUSG00000029423.10, intron 4 of 21) -3629 ENSMUSG00000105483.1 ENSMUSG00000105483 ENSMUST00000196722 4930553I04Rik TEC Interval_14060 chr10 26353459 26354160 + 0 NA intron (ENSMUSG00000039089.15, intron 1 of 8) protein_coding-intron (ENSMUSG00000039089.15, intron 1 of 21) 3048 ENSMUSG00000098898.1 ENSMUSG00000098898 ENSMUST00000183340 Gm27754 miRNA Interval_172833 chrX 50840961 50842058 + 0 NA promoter-TSS (ENSMUSG00000031112.10) protein_coding-promoter-TSS (ENSMUSG00000031112.10) -36879 ENSMUSG00000031112.10 ENSMUSG00000031112 ENSMUST00000146956 Stk26 protein_coding Interval_87076 chr19 45993400 45994490 + 0 NA intron (ENSMUSG00000039901.10, intron 1 of 20) protein_coding-intron (ENSMUSG00000039901.10, intron 1 of 25) -4260 ENSMUSG00000097690.2 ENSMUSG00000097690 ENSMUST00000236194 4930505N22Rik bidirectional_promoter_lncRNA Interval_73465 chr17 37546314 37546553 + 0 NA Intergenic Intergenic 20473 ENSMUSG00000090675.2 ENSMUSG00000090675 ENSMUST00000097325 Olfr111 protein_coding Interval_41522 chr12 115912395 115912725 + 0 NA exon (ENSMUSG00000094075.1, exon 2 of 2) IG_V_gene-exon (ENSMUSG00000094075.1, exon 2 of 2) 216 ENSMUSG00000094075.1 ENSMUSG00000094075 ENSMUST00000103547 Ighv1-80 IG_V_gene Interval_163097 chr9 15260045 15261214 + 0 NA exon (ENSMUSG00000031935.9, exon 12 of 12) protein_coding-exon (ENSMUSG00000031935.9, exon 12 of 12) 19274 ENSMUSG00000031935.9 ENSMUSG00000031935 ENSMUST00000216406 Med17 protein_coding Interval_96724 chr2 127461788 127462863 + 0 NA intron (ENSMUSG00000079056.12, intron 5 of 8) protein_coding-intron (ENSMUSG00000079056.12, intron 5 of 8) 10983 ENSMUSG00000084628.1 ENSMUSG00000084628 ENSMUST00000122679 Gm22613 misc_RNA Interval_41624 chr12 117131998 117132458 + 0 NA intron (ENSMUSG00000056553.14, intron 12 of 22) protein_coding-intron (ENSMUSG00000056553.14, intron 12 of 22) 18987 ENSMUSG00000099907.1 ENSMUSG00000099907 ENSMUST00000186114 Gm10421 processed_transcript Interval_5095 chr1 84902221 84902669 + 0 NA Intergenic Intergenic 32412 ENSMUSG00000026220.6 ENSMUSG00000026220 ENSMUST00000186980 Slc16a14 protein_coding Interval_136393 chr6 54073615 54074075 + 0 NA intron (ENSMUSG00000004633.17, intron 1 of 4) protein_coding-intron (ENSMUSG00000004633.17, intron 1 of 12) 77092 ENSMUSG00000087670.1 ENSMUSG00000087670 ENSMUST00000138767 9530036M11Rik antisense Interval_165362 chr9 46617227 46617723 + 0 NA Intergenic Intergenic 10220 ENSMUSG00000111649.1 ENSMUSG00000111649 ENSMUST00000217349 Gm48945 lincRNA Interval_45697 chr13 57032459 57032865 + 0 NA Intergenic Intergenic -101714 ENSMUSG00000077279.1 ENSMUSG00000077279 ENSMUST00000104091 Gm22777 snoRNA Interval_89445 chr2 20710644 20711344 + 0 NA exon (ENSMUSG00000036617.17, exon 4 of 4) protein_coding-exon (ENSMUSG00000036617.17, exon 4 of 4) 2240 ENSMUSG00000086418.1 ENSMUSG00000086418 ENSMUST00000137186 Gm13362 antisense Interval_61989 chr15 85678593 85679584 + 0 NA intron (ENSMUSG00000116305.1, intron 1 of 6) processed_transcript-intron (ENSMUSG00000116305.1, intron 1 of 6) 25472 ENSMUSG00000116305.1 ENSMUSG00000116305 ENSMUST00000230286 Lncppara processed_transcript Interval_141543 chr6 129059476 129060129 + 0 NA Intergenic Intergenic -9967 ENSMUSG00000107811.1 ENSMUSG00000107811 ENSMUST00000205038 Gm44000 antisense Interval_112510 chr4 41695828 41697897 + 0 NA promoter-TSS (ENSMUSG00000028444.17) protein_coding-promoter-TSS (ENSMUSG00000028444.17) 16672 ENSMUSG00000036114.3 ENSMUSG00000036114 ENSMUST00000038434 Rpp25l protein_coding Interval_58187 chr15 30509758 30510393 + 0 NA intron (ENSMUSG00000022240.10, intron 3 of 5) protein_coding-intron (ENSMUSG00000022240.10, intron 3 of 22) -80212 ENSMUSG00000087836.1 ENSMUSG00000087836 ENSMUST00000157211 Gm23956 rRNA Interval_160132 chr8 106631804 106633586 + 0 NA intron (ENSMUSG00000000303.12, intron 2 of 16) protein_coding-intron (ENSMUSG00000000303.12, intron 2 of 15) 29316 ENSMUSG00000000303.12 ENSMUSG00000000303 ENSMUST00000136580 Cdh1 protein_coding Interval_31717 chr11 102414731 102415876 + 0 NA Intergenic Intergenic -8487 ENSMUSG00000018677.9 ENSMUSG00000018677 ENSMUST00000147860 Slc25a39 protein_coding Interval_27707 chr11 69579001 69582654 + 0 NA promoter-TSS (ENSMUSG00000041346.11) protein_coding-promoter-TSS (ENSMUSG00000041346.11) 468 ENSMUSG00000059552.13 ENSMUSG00000059552 ENSMUST00000130540 Trp53 protein_coding Interval_148210 chr7 79868005 79869857 + 0 NA Intergenic Intergenic -37060 ENSMUSG00000108476.1 ENSMUSG00000108476 ENSMUST00000206387 Gm44974 TEC Interval_154514 chr8 18845888 18847149 + 0 NA exon (ENSMUSG00000031467.10, exon 1 of 8) protein_coding-exon (ENSMUSG00000031467.10, exon 1 of 8) 241 ENSMUSG00000031467.10 ENSMUSG00000031467 ENSMUST00000033847 Agpat5 protein_coding Interval_110524 chr4 3562752 3562941 + 0 NA intron (ENSMUSG00000028232.13, intron 4 of 8) protein_coding-intron (ENSMUSG00000028232.13, intron 4 of 7) 11963 ENSMUSG00000028232.13 ENSMUSG00000028232 ENSMUST00000134451 Tmem68 protein_coding Interval_61961 chr15 85512796 85513469 + 0 NA Intergenic Intergenic 2320 ENSMUSG00000063548.3 ENSMUSG00000063548 ENSMUST00000079690 Gm4825 processed_pseudogene Interval_147117 chr7 63366293 63366967 + 0 NA intron (ENSMUSG00000097682.1, intron 7 of 9) lincRNA-intron (ENSMUSG00000097682.1, intron 7 of 9) 77899 ENSMUSG00000097682.1 ENSMUSG00000097682 ENSMUST00000181327 4930554H23Rik lincRNA Interval_137395 chr6 71898923 71899656 + 0 NA promoter-TSS (ENSMUSG00000063884.6) protein_coding-promoter-TSS (ENSMUSG00000063884.6) 9461 ENSMUSG00000063884.6 ENSMUSG00000063884 ENSMUST00000205420 Ptcd3 protein_coding Interval_53539 chr14 58617514 58617795 + 0 NA Intergenic Intergenic 32746 ENSMUSG00000077201.1 ENSMUSG00000077201 ENSMUST00000104013 Gm25614 snoRNA Interval_9895 chr1 163909781 163911018 + 0 NA intron (ENSMUSG00000026585.13, intron 19 of 19) protein_coding-intron (ENSMUSG00000026585.13, intron 19 of 19) -19391 ENSMUSG00000026584.14 ENSMUSG00000026584 ENSMUST00000162920 Scyl3 protein_coding Interval_108533 chr3 128127872 128128144 + 0 NA intron (ENSMUSG00000105816.4, intron 3 of 5) processed_transcript-intron (ENSMUSG00000105816.4, intron 3 of 3) 5352 ENSMUSG00000105816.4 ENSMUSG00000105816 ENSMUST00000198275 D030025E07Rik processed_transcript Interval_136132 chr6 51398908 51399758 + 0 NA Intergenic Intergenic 2886 ENSMUSG00000108236.1 ENSMUSG00000108236 ENSMUST00000204546 0610033M10Rik lincRNA Interval_42697 chr13 18124020 18125808 + 0 NA TTS (ENSMUSG00000009734.18) protein_coding-TTS (ENSMUSG00000009734.18) -24712 ENSMUSG00000113470.1 ENSMUSG00000113470 ENSMUST00000220795 4930448F12Rik lincRNA Interval_36109 chr12 35957122 35957674 + 0 NA Intergenic Intergenic 31776 ENSMUSG00000036231.5 ENSMUSG00000036231 ENSMUST00000154042 Agr3 protein_coding Interval_45100 chr13 52151624 52152101 + 0 NA Intergenic Intergenic -28549 ENSMUSG00000113399.1 ENSMUSG00000113399 ENSMUST00000222876 Gm48199 lincRNA Interval_71795 chr17 26138089 26139540 + 0 NA promoter-TSS (ENSMUSG00000024182.16) protein_coding-promoter-TSS (ENSMUSG00000024182.16) 15294 ENSMUSG00000024181.9 ENSMUSG00000024181 ENSMUST00000123132 Mrpl28 protein_coding Interval_117904 chr4 126974390 126975296 + 0 NA Intergenic Intergenic -6944 ENSMUSG00000042446.16 ENSMUSG00000042446 ENSMUST00000123597 Zmym4 protein_coding Interval_68492 chr16 78206707 78207055 + 0 NA Intergenic Intergenic -33377 ENSMUSG00000077451.1 ENSMUSG00000077451 ENSMUST00000104263 Gm25916 snoRNA Interval_77817 chr18 3986008 3986351 + 0 NA Intergenic Intergenic -24077 ENSMUSG00000117395.1 ENSMUSG00000117395 ENSMUST00000234528 Gm7378 processed_pseudogene Interval_92181 chr2 55490371 55491035 + 0 NA intron (ENSMUSG00000026824.11, intron 2 of 2) protein_coding-intron (ENSMUSG00000026824.11, intron 3 of 3) 53547 ENSMUSG00000026824.11 ENSMUSG00000026824 ENSMUST00000112632 Kcnj3 protein_coding Interval_139270 chr6 97739991 97742034 + 0 NA Intergenic Intergenic 10573 ENSMUSG00000094510.1 ENSMUSG00000094510 ENSMUST00000180099 Gm24565 snRNA Interval_22637 chr11 12426176 12426370 + 0 NA intron (ENSMUSG00000020173.17, intron 1 of 11) protein_coding-intron (ENSMUSG00000020173.17, intron 1 of 14) -14129 ENSMUSG00000020173.17 ENSMUSG00000020173 ENSMUST00000146067 Cobl protein_coding Interval_85273 chr19 24279760 24281230 + 0 NA promoter-TSS (ENSMUSG00000059363.10) protein_coding-promoter-TSS (ENSMUSG00000059363.10) -2324 ENSMUSG00000059363.10 ENSMUSG00000059363 ENSMUST00000132688 Fxn protein_coding Interval_120 GL456354.1 133219 133945 + 0 NA NA NA NA NA Interval_59183 chr15 47007434 47008332 + 0 NA Intergenic Intergenic -63435 ENSMUSG00000088679.1 ENSMUSG00000088679 ENSMUST00000158054 Gm23665 snRNA Interval_11124 chr1 179516738 179518468 + 0 NA intron (ENSMUSG00000055067.15, intron 1 of 1) protein_coding-intron (ENSMUSG00000055067.15, intron 1 of 5) 402 ENSMUSG00000055067.15 ENSMUSG00000055067 ENSMUST00000194237 Smyd3 protein_coding Interval_123730 chr5 34985833 34986098 + 0 NA intron (ENSMUSG00000029101.16, intron 2 of 3) protein_coding-intron (ENSMUSG00000029101.16, intron 3 of 16) -28355 ENSMUSG00000029101.16 ENSMUSG00000029101 ENSMUST00000150139 Rgs12 protein_coding Interval_13149 chr10 12534711 12535205 + 0 NA intron (ENSMUSG00000019820.11, intron 2 of 24) protein_coding-intron (ENSMUSG00000019820.11, intron 51 of 73) -113362 ENSMUSG00000112816.1 ENSMUSG00000112816 ENSMUST00000220361 Gm48798 TEC Interval_14010 chr10 25434805 25435163 + 0 NA intron (ENSMUSG00000019978.16, intron 1 of 1) protein_coding-intron (ENSMUSG00000019978.16, intron 1 of 19) -18799 ENSMUSG00000112445.1 ENSMUSG00000112445 ENSMUST00000219193 Gm47830 processed_pseudogene Interval_123963 chr5 36890725 36891157 + 0 NA intron (ENSMUSG00000029120.10, intron 1 of 3) protein_coding-intron (ENSMUSG00000029120.10, intron 1 of 8) -14062 ENSMUSG00000087487.1 ENSMUSG00000087487 ENSMUST00000152862 Ppp2r2cos antisense Interval_71991 chr17 27464514 27464935 + 0 NA intron (ENSMUSG00000063239.17, intron 2 of 9) protein_coding-intron (ENSMUSG00000063239.17, intron 3 of 10) 4165 ENSMUSG00000116568.1 ENSMUSG00000116568 ENSMUST00000231818 Gm49790 TEC Interval_170154 chr9 105641091 105643551 + 0 NA promoter-TSS (ENSMUSG00000032571.14) protein_coding-promoter-TSS (ENSMUSG00000032571.14) 31230 ENSMUSG00000084659.1 ENSMUSG00000084659 ENSMUST00000122710 Gm22720 snRNA Interval_15134 chr10 42824649 42824880 + 0 NA intron (ENSMUSG00000019802.13, intron 18 of 19) protein_coding-intron (ENSMUSG00000019802.13, intron 19 of 20) -3997 ENSMUSG00000087719.1 ENSMUSG00000087719 ENSMUST00000157094 Gm26464 ribozyme Interval_43279 chr13 28633328 28634095 + 0 NA intron (ENSMUSG00000085936.7, intron 5 of 7) processed_transcript-intron (ENSMUSG00000085936.7, intron 4 of 5) 77162 ENSMUSG00000099158.1 ENSMUSG00000099158 ENSMUST00000184136 Mir6368 miRNA Interval_30953 chr11 97399993 97401353 + 0 NA Intergenic Intergenic -35612 ENSMUSG00000049807.16 ENSMUSG00000049807 ENSMUST00000093940 Arhgap23 protein_coding Interval_103914 chr3 54922946 54923651 + 0 NA Intergenic Intergenic -8267 ENSMUSG00000056306.5 ENSMUSG00000056306 ENSMUST00000070342 Sertm1 protein_coding Interval_46062 chr13 60691787 60692267 + 0 NA intron (ENSMUSG00000021559.14, intron 2 of 26) protein_coding-intron (ENSMUSG00000021559.14, intron 2 of 26) 50237 ENSMUSG00000114277.1 ENSMUSG00000114277 ENSMUST00000225897 Gm48583 processed_pseudogene Interval_9379 chr1 156668491 156670027 + 0 NA intron (ENSMUSG00000060519.11, intron 3 of 6) protein_coding-intron (ENSMUSG00000060519.11, intron 3 of 5) 5076 ENSMUSG00000060519.11 ENSMUSG00000060519 ENSMUST00000190607 Tor3a protein_coding Interval_62853 chr15 97429683 97430016 + 0 NA Intergenic Intergenic 68647 ENSMUSG00000044250.8 ENSMUSG00000044250 ENSMUST00000226495 Pced1b protein_coding Interval_120779 chr4 150610406 150610602 + 0 NA intron (ENSMUSG00000039852.17, intron 3 of 4) protein_coding-intron (ENSMUSG00000039852.17, intron 6 of 16) -4911 ENSMUSG00000039852.17 ENSMUSG00000039852 ENSMUST00000136646 Rere protein_coding Interval_84722 chr19 15946730 15947282 + 0 NA intron (ENSMUSG00000024640.9, intron 1 of 5) protein_coding-intron (ENSMUSG00000024640.9, intron 1 of 5) 331 ENSMUSG00000024640.9 ENSMUSG00000024640 ENSMUST00000162233 Psat1 protein_coding Interval_39259 chr12 86281019 86281490 + 0 NA intron (ENSMUSG00000021254.9, intron 8 of 8) protein_coding-intron (ENSMUSG00000021254.9, intron 8 of 8) 19578 ENSMUSG00000021254.9 ENSMUSG00000021254 ENSMUST00000222299 Gpatch2l protein_coding Interval_132517 chr5 145678370 145678940 + 0 NA Intergenic Intergenic 41481 ENSMUSG00000075551.4 ENSMUSG00000075551 ENSMUST00000094111 Cyp3a41a protein_coding Interval_158281 chr8 80801150 80801635 + 0 NA intron (ENSMUSG00000031714.9, intron 1 of 10) protein_coding-intron (ENSMUSG00000031714.9, intron 1 of 9) 29492 ENSMUSG00000031714.9 ENSMUSG00000031714 ENSMUST00000211018 Gab1 protein_coding Interval_95589 chr2 112513442 112513949 + 0 NA intron (ENSMUSG00000003604.14, intron 1 of 5) protein_coding-intron (ENSMUSG00000003604.14, intron 1 of 5) 12826 ENSMUSG00000080622.1 ENSMUSG00000080622 ENSMUST00000116972 Gm22676 snoRNA Interval_163397 chr9 21248480 21248908 + 0 NA promoter-TSS (ENSMUSG00000045087.8) protein_coding-promoter-TSS (ENSMUSG00000045087.8) -251 ENSMUSG00000045087.8 ENSMUSG00000045087 ENSMUST00000122088 S1pr5 protein_coding Interval_98694 chr2 154360445 154361617 + 0 NA TTS (ENSMUSG00000027487.11) protein_coding-TTS (ENSMUSG00000027487.11) -6687 ENSMUSG00000027487.11 ENSMUSG00000027487 ENSMUST00000137918 Cdk5rap1 protein_coding Interval_3286 chr1 55700817 55702289 + 0 NA promoter-TSS (ENSMUSG00000038349.10) protein_coding-promoter-TSS (ENSMUSG00000038349.10) -472 ENSMUSG00000038349.10 ENSMUSG00000038349 ENSMUST00000187059 Plcl1 protein_coding Interval_66537 chr16 34967168 34968496 + 0 NA intron (ENSMUSG00000022836.11, intron 12 of 17) protein_coding-intron (ENSMUSG00000022836.11, intron 22 of 31) -8954 ENSMUSG00000116665.1 ENSMUSG00000116665 ENSMUST00000232399 E130310I04Rik antisense Interval_169985 chr9 103434124 103434496 + 0 NA intron (ENSMUSG00000032556.11, intron 2 of 4) protein_coding-intron (ENSMUSG00000032556.11, intron 4 of 6) -7066 ENSMUSG00000086236.9 ENSMUSG00000086236 ENSMUST00000218189 5830418P13Rik antisense Interval_31331 chr11 100018076 100018245 + 0 NA Intergenic Intergenic -4173 ENSMUSG00000035592.2 ENSMUSG00000035592 ENSMUST00000138756 Krt33a protein_coding Interval_117755 chr4 126046462 126047689 + 0 NA promoter-TSS (ENSMUSG00000028861.13) protein_coding-promoter-TSS (ENSMUSG00000028861.13) 98 ENSMUSG00000028861.13 ENSMUSG00000028861 ENSMUST00000124614 Mrps15 protein_coding Interval_26153 chr11 54768086 54768368 + 0 NA intron (ENSMUSG00000052298.12, intron 1 of 4) protein_coding-intron (ENSMUSG00000052298.12, intron 1 of 5) 19419 ENSMUSG00000052298.12 ENSMUSG00000052298 ENSMUST00000123424 Cdc42se2 protein_coding Interval_125118 chr5 64647051 64648758 + 0 NA promoter-TSS (ENSMUSG00000093029.1) miRNA-promoter-TSS (ENSMUSG00000093029.1) -155 ENSMUSG00000093029.1 ENSMUSG00000093029 ENSMUST00000175288 Gm25306 miRNA Interval_56894 chr14 122921578 122922401 + 0 NA promoter-TSS (ENSMUSG00000041594.18) protein_coding-promoter-TSS (ENSMUSG00000041594.18) -67 ENSMUSG00000041594.18 ENSMUSG00000041594 ENSMUST00000141478 Tmtc4 protein_coding Interval_12173 chr1 190520132 190520395 + 0 NA Intergenic Intergenic -37106 ENSMUSG00000093064.2 ENSMUSG00000093064 ENSMUST00000175323 Gm23153 misc_RNA Interval_84537 chr19 12475559 12475816 + 0 NA intron (ENSMUSG00000039982.8, intron 7 of 8) protein_coding-intron (ENSMUSG00000039982.8, intron 7 of 8) 14908 ENSMUSG00000046805.10 ENSMUSG00000046805 ENSMUST00000081035 Mpeg1 protein_coding Interval_162088 chr8 125012522 125013705 + 0 NA promoter-TSS (ENSMUSG00000056820.7) protein_coding-promoter-TSS (ENSMUSG00000056820.7) 64 ENSMUSG00000056820.7 ENSMUSG00000056820 ENSMUST00000212603 Tsnax protein_coding Interval_155815 chr8 39118638 39119019 + 0 NA intron (ENSMUSG00000039530.17, intron 4 of 5) protein_coding-intron (ENSMUSG00000039530.17, intron 6 of 9) -82221 ENSMUSG00000109922.1 ENSMUSG00000109922 ENSMUST00000211091 Gm20948 processed_pseudogene Interval_147104 chr7 62989485 62989791 + 0 NA Intergenic Intergenic 146652 ENSMUSG00000109057.1 ENSMUSG00000109057 ENSMUST00000207503 Gm44741 TEC Interval_150793 chr7 114648744 114649227 + 0 NA Intergenic Intergenic -12690 ENSMUSG00000030669.13 ENSMUSG00000030669 ENSMUST00000205714 Calca protein_coding Interval_125682 chr5 73217403 73217902 + 0 NA intron (ENSMUSG00000070733.13, intron 2 of 11) protein_coding-intron (ENSMUSG00000070733.13, intron 2 of 62) -5009 ENSMUSG00000090561.2 ENSMUSG00000090561 ENSMUST00000168686 Gm17207 sense_intronic Interval_119462 chr4 137744123 137745151 + 0 NA intron (ENSMUSG00000028766.10, intron 9 of 11) protein_coding-intron (ENSMUSG00000028766.10, intron 9 of 11) 37554 ENSMUSG00000028766.10 ENSMUSG00000028766 ENSMUST00000143757 Alpl protein_coding Interval_130738 chr5 130052685 130052893 + 0 NA intron (ENSMUSG00000025532.13, intron 4 of 4) protein_coding-intron (ENSMUSG00000025532.13, intron 5 of 5) 23478 ENSMUSG00000025532.13 ENSMUSG00000025532 ENSMUST00000202691 Crcp protein_coding Interval_32312 chr11 106828168 106828545 + 0 NA intron (ENSMUSG00000018363.16, intron 17 of 19) protein_coding-intron (ENSMUSG00000018363.16, intron 16 of 18) 10522 ENSMUSG00000018372.13 ENSMUSG00000018372 ENSMUST00000124898 Cep95 protein_coding Interval_49548 chr13 112867230 112867576 + 0 NA TTS (ENSMUSG00000016018.4) protein_coding-TTS (ENSMUSG00000016018.4) -16823 ENSMUSG00000098067.1 ENSMUSG00000098067 ENSMUST00000182295 Gm26943 processed_pseudogene Interval_41711 chr12 118144941 118145499 + 0 NA intron (ENSMUSG00000018581.15, intron 9 of 81) protein_coding-intron (ENSMUSG00000018581.15, intron 9 of 81) -84917 ENSMUSG00000018581.15 ENSMUSG00000018581 ENSMUST00000176239 Dnah11 protein_coding Interval_29681 chr11 86005068 86006338 + 0 NA Intergenic Intergenic 55208 ENSMUSG00000081632.1 ENSMUSG00000081632 ENSMUST00000118790 Gm11443 processed_pseudogene Interval_167174 chr9 65855777 65856041 + 0 NA intron (ENSMUSG00000032386.15, intron 12 of 14) protein_coding-intron (ENSMUSG00000032386.15, intron 9 of 12) 17742 ENSMUSG00000079915.2 ENSMUSG00000079915 ENSMUST00000116032 Gm16073 processed_pseudogene Interval_98807 chr2 155140930 155142613 + 0 NA intron (ENSMUSG00000027598.16, intron 2 of 15) protein_coding-intron (ENSMUSG00000027598.16, intron 2 of 24) 8262 ENSMUSG00000027598.16 ENSMUSG00000027598 ENSMUST00000123497 Itch protein_coding Interval_115555 chr4 100758279 100758539 + 0 NA Intergenic Intergenic 177131 ENSMUSG00000082601.1 ENSMUSG00000082601 ENSMUST00000118145 Gm12700 processed_pseudogene Interval_37679 chr12 71047890 71048459 + 0 NA promoter-TSS (ENSMUSG00000048118.17) protein_coding-promoter-TSS (ENSMUSG00000048118.17) -167 ENSMUSG00000048118.17 ENSMUSG00000048118 ENSMUST00000135709 Arid4a protein_coding Interval_110806 chr4 8573479 8573971 + 0 NA intron (ENSMUSG00000047187.9, intron 3 of 7) protein_coding-intron (ENSMUSG00000047187.9, intron 3 of 7) 38081 ENSMUSG00000047187.9 ENSMUSG00000047187 ENSMUST00000060232 Rab2a protein_coding Interval_30046 chr11 88873157 88873914 + 0 NA intron (ENSMUSG00000092399.1, intron 3 of 4) antisense-intron (ENSMUSG00000092399.1, intron 3 of 4) 21931 ENSMUSG00000092399.1 ENSMUSG00000092399 ENSMUST00000173677 4930556N13Rik antisense Interval_2169 chr1 36830507 36831730 + 0 NA intron (ENSMUSG00000026116.11, intron 12 of 41) protein_coding-intron (ENSMUSG00000026116.11, intron 11 of 40) 40927 ENSMUSG00000103016.1 ENSMUSG00000103016 ENSMUST00000192008 Gm37506 TEC Interval_67945 chr16 60110488 60110829 + 0 NA intron (ENSMUSG00000055540.15, intron 5 of 17) protein_coding-intron (ENSMUSG00000055540.15, intron 5 of 17) 258505 ENSMUSG00000096535.1 ENSMUSG00000096535 ENSMUST00000179691 Gm24755 miRNA Interval_144483 chr7 25389548 25390191 + 0 NA promoter-TSS (ENSMUSG00000003123.15) protein_coding-promoter-TSS (ENSMUSG00000003123.15) -645 ENSMUSG00000003123.15 ENSMUSG00000003123 ENSMUST00000105177 Lipe protein_coding Interval_78940 chr18 22241653 22242649 + 0 NA Intergenic Intergenic -70709 ENSMUSG00000024306.13 ENSMUSG00000024306 ENSMUST00000234661 Ccdc178 protein_coding Interval_59816 chr15 59533723 59534305 + 0 NA intron (ENSMUSG00000059586.10, intron 5 of 7) protein_coding-intron (ENSMUSG00000059586.10, intron 4 of 6) -84576 ENSMUSG00000115896.1 ENSMUSG00000115896 ENSMUST00000229684 Gm36677 lincRNA Interval_131058 chr5 134826569 134826843 + 0 NA Intergenic Intergenic 79664 ENSMUSG00000107318.1 ENSMUSG00000107318 ENSMUST00000200700 Gm30003 antisense Interval_108564 chr3 129065487 129065969 + 0 NA Intergenic Intergenic 4816 ENSMUSG00000099640.1 ENSMUSG00000099640 ENSMUST00000188986 Gm28543 lincRNA Interval_170950 chr9 113173993 113174401 + 0 NA TTS (ENSMUSG00000111235.1) lincRNA-TTS (ENSMUSG00000111235.1) 15618 ENSMUSG00000111235.1 ENSMUSG00000111235 ENSMUST00000213839 Gm4657 lincRNA Interval_3673 chr1 60596909 60597278 + 0 NA promoter-TSS (ENSMUSG00000103215.1) TEC-promoter-TSS (ENSMUSG00000103215.1) -857 ENSMUSG00000103215.1 ENSMUSG00000103215 ENSMUST00000195569 Gm38388 TEC Interval_150061 chr7 105514984 105515798 + 0 NA Intergenic Intergenic -33091 ENSMUSG00000037060.3 ENSMUSG00000037060 ENSMUST00000047040 Cavin3 protein_coding Interval_67960 chr16 61369507 61370158 + 0 NA Intergenic Intergenic 3312 ENSMUSG00000064467.1 ENSMUSG00000064467 ENSMUST00000082533 n-R5s37 rRNA Interval_15305 chr10 44370704 44371185 + 0 NA Intergenic Intergenic 11268 ENSMUSG00000089260.1 ENSMUSG00000089260 ENSMUST00000158635 Mir1929 miRNA Interval_142617 chr6 144313131 144313956 + 0 NA intron (ENSMUSG00000041540.16, intron 4 of 6) protein_coding-intron (ENSMUSG00000041540.16, intron 4 of 13) -103975 ENSMUSG00000041540.16 ENSMUSG00000041540 ENSMUST00000150087 Sox5 protein_coding Interval_122783 chr5 25432720 25433071 + 0 NA TTS (ENSMUSG00000092181.1) processed_pseudogene-TTS (ENSMUSG00000092181.1) 390 ENSMUSG00000092181.1 ENSMUSG00000092181 ENSMUST00000173716 Gm20432 processed_pseudogene Interval_120134 chr4 142880142 142881660 + 0 NA intron (ENSMUSG00000110067.2, intron 1 of 1) protein_coding-intron (ENSMUSG00000110067.2, intron 1 of 2) 90093 ENSMUSG00000103678.1 ENSMUSG00000103678 ENSMUST00000193751 Gm37624 TEC Interval_147776 chr7 73502056 73502319 + 0 NA promoter-TSS (ENSMUSG00000078671.11) protein_coding-promoter-TSS (ENSMUSG00000078671.11) -2939 ENSMUSG00000108319.1 ENSMUSG00000108319 ENSMUST00000205458 Gm44552 TEC Interval_111512 chr4 22301640 22302496 + 0 NA Intergenic Intergenic 26235 ENSMUSG00000083376.1 ENSMUSG00000083376 ENSMUST00000121463 Gm11882 processed_pseudogene Interval_150447 chr7 110708313 110709349 + 0 NA Intergenic Intergenic 4566 ENSMUSG00000109749.1 ENSMUSG00000109749 ENSMUST00000209719 Gm18907 processed_pseudogene Interval_34522 chr12 4888175 4888601 + 0 NA intron (ENSMUSG00000020634.12, intron 3 of 5) protein_coding-intron (ENSMUSG00000020634.12, intron 4 of 6) 18876 ENSMUSG00000020634.12 ENSMUSG00000020634 ENSMUST00000141360 Ubxn2a protein_coding Interval_53017 chr14 53544731 53545543 + 0 NA intron (ENSMUSG00000076839.3, intron 1 of 1) TR_V_gene-intron (ENSMUSG00000076839.3, intron 1 of 1) 123 ENSMUSG00000076839.3 ENSMUSG00000076839 ENSMUST00000103651 Trav13-1 TR_V_gene Interval_136794 chr6 60406961 60407476 + 0 NA Intergenic Intergenic -3511 ENSMUSG00000046764.8 ENSMUSG00000046764 ENSMUST00000203367 A530053G22Rik processed_transcript Interval_8156 chr1 136136557 136137231 + 0 NA intron (ENSMUSG00000041642.18, intron 1 of 35) protein_coding-intron (ENSMUSG00000041642.18, intron 1 of 34) -5723 ENSMUSG00000086264.9 ENSMUSG00000086264 ENSMUST00000165464 Gm15850 processed_transcript Interval_7357 chr1 130422441 130423412 + 0 NA promoter-TSS (ENSMUSG00000026401.15) protein_coding-promoter-TSS (ENSMUSG00000026401.15) 102 ENSMUSG00000087691.1 ENSMUSG00000087691 ENSMUST00000143266 Cd55os antisense Interval_16435 chr10 62854935 62855284 + 0 NA intron (ENSMUSG00000047146.17, intron 3 of 12) protein_coding-intron (ENSMUSG00000047146.17, intron 2 of 10) 4885 ENSMUSG00000112309.1 ENSMUSG00000112309 ENSMUST00000220243 Gm48353 TEC Interval_92869 chr2 67308292 67308659 + 0 NA intron (ENSMUSG00000027022.14, intron 3 of 10) protein_coding-intron (ENSMUSG00000027022.14, intron 2 of 10) 88016 ENSMUSG00000087043.1 ENSMUSG00000087043 ENSMUST00000134476 Gm13599 antisense Interval_167195 chr9 66088429 66089280 + 0 NA TTS (ENSMUSG00000032382.14) protein_coding-TTS (ENSMUSG00000032382.14) 16870 ENSMUSG00000032382.14 ENSMUSG00000032382 ENSMUST00000145449 Snx1 protein_coding Interval_52649 chr14 48235276 48235503 + 0 NA intron (ENSMUSG00000021846.9, intron 1 of 4) protein_coding-intron (ENSMUSG00000021846.9, intron 2 of 5) 8188 ENSMUSG00000063885.5 ENSMUSG00000063885 ENSMUST00000181413 Gm6498 transcribed_processed_pseudogene Interval_96367 chr2 122004857 122005334 + 0 NA intron (ENSMUSG00000033411.16, intron 10 of 12) protein_coding-intron (ENSMUSG00000033411.16, intron 10 of 12) -23547 ENSMUSG00000104603.1 ENSMUSG00000104603 ENSMUST00000197244 Gm47314 miRNA Interval_57933 chr15 25593850 25594158 + 0 NA promoter-TSS (ENSMUSG00000115204.1) lincRNA-promoter-TSS (ENSMUSG00000115204.1) -913 ENSMUSG00000115204.1 ENSMUSG00000115204 ENSMUST00000228618 Gm36642 lincRNA Interval_152284 chr7 131380874 131381840 + 0 NA intron (ENSMUSG00000063179.13, intron 1 of 3) protein_coding-intron (ENSMUSG00000063179.13, intron 3 of 5) 4589 ENSMUSG00000108883.1 ENSMUSG00000108883 ENSMUST00000207934 Gm44623 antisense Interval_32323 chr11 106942311 106942512 + 0 NA Intergenic Intergenic -21650 ENSMUSG00000099125.1 ENSMUSG00000099125 ENSMUST00000184007 Gm27322 miRNA Interval_59288 chr15 50791324 50792600 + 0 NA intron (ENSMUSG00000038679.16, intron 5 of 7) protein_coding-intron (ENSMUSG00000038679.16, intron 5 of 6) 97152 ENSMUSG00000084458.1 ENSMUSG00000084458 ENSMUST00000122509 Mir1907 miRNA Interval_111888 chr4 32259488 32259694 + 0 NA intron (ENSMUSG00000087049.1, intron 2 of 3) protein_coding-intron (ENSMUSG00000040270.16, intron 1 of 7) 7830 ENSMUSG00000087049.1 ENSMUSG00000087049 ENSMUST00000133451 Bach2it1 sense_intronic Interval_7669 chr1 132934859 132935472 + 0 NA intron (ENSMUSG00000026443.3, intron 1 of 1) protein_coding-intron (ENSMUSG00000026443.3, intron 1 of 1) 10155 ENSMUSG00000102709.1 ENSMUSG00000102709 ENSMUST00000194934 Gm38308 TEC Interval_79492 chr18 32315398 32315602 + 0 NA Intergenic Intergenic 22150 ENSMUSG00000089529.1 ENSMUSG00000089529 ENSMUST00000158904 Gm22325 misc_RNA Interval_83380 chr18 84727248 84728093 + 0 NA intron (ENSMUSG00000047992.11, intron 2 of 3) protein_coding-intron (ENSMUSG00000047992.11, intron 2 of 4) -6895 ENSMUSG00000089760.1 ENSMUSG00000089760 ENSMUST00000162318 D030046N08Rik bidirectional_promoter_lncRNA Interval_27637 chr11 69211095 69212052 + 0 NA Intergenic Intergenic -14189 ENSMUSG00000020891.11 ENSMUSG00000020891 ENSMUST00000156157 Alox8 protein_coding Interval_31888 chr11 103627691 103628189 + 0 NA Intergenic Intergenic 7081 ENSMUSG00000020945.13 ENSMUSG00000020945 ENSMUST00000140430 Lyzl6 protein_coding Interval_1498 chr1 24180449 24181131 + 0 NA intron (ENSMUSG00000026147.16, intron 4 of 37) protein_coding-intron (ENSMUSG00000026147.16, intron 4 of 37) -48727 ENSMUSG00000026147.16 ENSMUSG00000026147 ENSMUST00000147902 Col9a1 protein_coding Interval_73132 chr17 34985477 34985697 + 0 NA TTS (ENSMUSG00000007050.17) protein_coding-TTS (ENSMUSG00000007050.17) 3418 ENSMUSG00000007050.17 ENSMUSG00000007050 ENSMUST00000172666 Lsm2 protein_coding Interval_33029 chr11 113766010 113767533 + 0 NA Intergenic Intergenic 10069 ENSMUSG00000083090.1 ENSMUSG00000083090 ENSMUST00000121468 Gm11736 processed_pseudogene Interval_45186 chr13 53027853 53028118 + 0 NA promoter-TSS (ENSMUSG00000112952.1) lincRNA-promoter-TSS (ENSMUSG00000112952.1) -933 ENSMUSG00000112952.1 ENSMUSG00000112952 ENSMUST00000222184 Gm48336 lincRNA Interval_57624 chr15 12896687 12898176 + 0 NA intron (ENSMUSG00000022191.16, intron 22 of 34) protein_coding-intron (ENSMUSG00000022191.16, intron 22 of 34) 55335 ENSMUSG00000104911.1 ENSMUSG00000104911 ENSMUST00000198820 Gm47288 miRNA Interval_47617 chr13 90169877 90170947 + 0 NA Intergenic Intergenic 13258 ENSMUSG00000103228.1 ENSMUSG00000103228 ENSMUST00000191637 Gm37727 TEC Interval_50377 chr14 12221561 12221991 + 0 NA intron (ENSMUSG00000021745.14, intron 26 of 29) protein_coding-intron (ENSMUSG00000021745.14, intron 26 of 29) -62200 ENSMUSG00000114378.1 ENSMUSG00000114378 ENSMUST00000225871 Gm49355 protein_coding Interval_42036 chr13 6665393 6665638 + 0 NA Intergenic Intergenic -2621 ENSMUSG00000068324.5 ENSMUSG00000068324 ENSMUST00000089635 Gm10029 processed_pseudogene Interval_156500 chr8 48751711 48752757 + 0 NA intron (ENSMUSG00000031561.16, intron 1 of 2) protein_coding-intron (ENSMUSG00000031561.16, intron 1 of 2) -91488 ENSMUSG00000100706.6 ENSMUSG00000100706 ENSMUST00000188936 Gm19744 processed_transcript Interval_145693 chr7 37466324 37467469 + 0 NA exon (ENSMUSG00000108790.1, exon 1 of 1) TEC-exon (ENSMUSG00000108790.1, exon 1 of 1) 526 ENSMUSG00000108790.1 ENSMUSG00000108790 ENSMUST00000205574 Gm44806 TEC Interval_153895 chr8 10837751 10838280 + 0 NA Intergenic Intergenic 28171 ENSMUSG00000108961.1 ENSMUSG00000108961 ENSMUST00000207174 Gm32540 lincRNA Interval_13296 chr10 14304372 14304872 + 0 NA intron (ENSMUSG00000112679.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000112679.1, intron 1 of 2) 7659 ENSMUSG00000112679.1 ENSMUSG00000112679 ENSMUST00000219975 Gm40603 lincRNA Interval_137460 chr6 72584129 72584522 + 0 NA TTS (ENSMUSG00000056698.11) protein_coding-TTS (ENSMUSG00000056698.11) 14088 ENSMUSG00000056698.11 ENSMUSG00000056698 ENSMUST00000152705 Elmod3 protein_coding Interval_54879 chr14 75962249 75962480 + 0 NA intron (ENSMUSG00000046523.5, intron 1 of 1) protein_coding-intron (ENSMUSG00000046523.5, intron 1 of 1) 7355 ENSMUSG00000046523.5 ENSMUSG00000046523 ENSMUST00000050120 Kctd4 protein_coding Interval_99297 chr2 158761515 158761738 + 0 NA exon (ENSMUSG00000037754.13, exon 11 of 11) protein_coding-exon (ENSMUSG00000037754.13, exon 11 of 11) -19782 ENSMUSG00000027654.2 ENSMUSG00000027654 ENSMUST00000151801 Fam83d protein_coding Interval_2352 chr1 38319711 38320088 + 0 NA intron (ENSMUSG00000037138.18, intron 9 of 22) protein_coding-intron (ENSMUSG00000037138.18, intron 9 of 22) 11997 ENSMUSG00000085280.1 ENSMUSG00000085280 ENSMUST00000129696 Gm16151 antisense Interval_17198 chr10 74920943 74921601 + 0 NA Intergenic Intergenic -45937 ENSMUSG00000040009.6 ENSMUSG00000040009 ENSMUST00000159991 Gnaz protein_coding Interval_63990 chr16 5087542 5087772 + 0 NA exon (ENSMUSG00000039457.4, exon 22 of 22) protein_coding-exon (ENSMUSG00000039457.4, exon 22 of 22) -26775 ENSMUSG00000077367.1 ENSMUSG00000077367 ENSMUST00000104179 Gm23483 snRNA Interval_68563 chr16 78768215 78768432 + 0 NA Intergenic Intergenic 10590 ENSMUSG00000116730.1 ENSMUSG00000116730 ENSMUST00000232014 4930403O18Rik TEC Interval_159752 chr8 100886896 100888431 + 0 NA Intergenic Intergenic -161308 ENSMUSG00000109769.1 ENSMUSG00000109769 ENSMUST00000210760 Gm39232 lincRNA Interval_95521 chr2 111240164 111240467 + 0 NA Intergenic Intergenic -5280 ENSMUSG00000074966.5 ENSMUSG00000074966 ENSMUST00000099620 Olfr1275 protein_coding Interval_102089 chr3 16962821 16963066 + 0 NA Intergenic Intergenic -139631 ENSMUSG00000088644.1 ENSMUSG00000088644 ENSMUST00000158019 Gm26485 snRNA Interval_646 chr1 9506609 9507096 + 0 NA Intergenic Intergenic -5330 ENSMUSG00000103411.1 ENSMUSG00000103411 ENSMUST00000192792 Gm18300 processed_pseudogene Interval_28619 chr11 77214881 77217045 + 0 NA promoter-TSS (ENSMUSG00000037926.15) protein_coding-promoter-TSS (ENSMUSG00000037926.15) -15144 ENSMUSG00000109010.1 ENSMUSG00000109010 ENSMUST00000207081 Gm45027 lincRNA Interval_127230 chr5 101695941 101696243 + 0 NA Intergenic Intergenic -7494 ENSMUSG00000106164.1 ENSMUSG00000106164 ENSMUST00000198824 9430085M18Rik lincRNA Interval_172359 chrX 13461131 13462554 + 0 NA Intergenic Intergenic -4268 ENSMUSG00000051228.5 ENSMUSG00000051228 ENSMUST00000050434 Nyx protein_coding Interval_134841 chr6 32211002 32211218 + 0 NA exon (ENSMUSG00000029765.12, exon 13 of 32) protein_coding-exon (ENSMUSG00000029765.12, exon 13 of 32) 14089 ENSMUSG00000029765.12 ENSMUSG00000029765 ENSMUST00000200732 Plxna4 protein_coding Interval_29191 chr11 81279776 81281339 + 0 NA intron (ENSMUSG00000020704.13, intron 1 of 9) protein_coding-intron (ENSMUSG00000020704.13, intron 1 of 9) -104456 ENSMUSG00000086971.1 ENSMUSG00000086971 ENSMUST00000141593 4930527B05Rik antisense Interval_57790 chr15 20003856 20004331 + 0 NA Intergenic Intergenic 14772 ENSMUSG00000115830.1 ENSMUSG00000115830 ENSMUST00000226614 Gm49176 processed_pseudogene Interval_104998 chr3 79604285 79605219 + 0 NA intron (ENSMUSG00000027809.14, intron 12 of 12) protein_coding-intron (ENSMUSG00000027809.14, intron 12 of 12) 7074 ENSMUSG00000102370.1 ENSMUSG00000102370 ENSMUST00000195767 Gm37973 TEC Interval_23607 chr11 23742626 23742888 + 0 NA exon (ENSMUSG00000020275.9, exon 10 of 10) protein_coding-exon (ENSMUSG00000020275.9, exon 10 of 10) 28213 ENSMUSG00000020275.9 ENSMUSG00000020275 ENSMUST00000102864 Rel protein_coding Interval_136403 chr6 54154066 54154469 + 0 NA intron (ENSMUSG00000004633.17, intron 1 of 5) protein_coding-intron (ENSMUSG00000004633.17, intron 1 of 12) -3330 ENSMUSG00000087670.1 ENSMUSG00000087670 ENSMUST00000138767 9530036M11Rik antisense Interval_113206 chr4 49879933 49880650 + 0 NA Intergenic Intergenic -133045 ENSMUSG00000083153.1 ENSMUSG00000083153 ENSMUST00000120659 Gm12459 processed_pseudogene Interval_105280 chr3 84500563 84501392 + 0 NA intron (ENSMUSG00000102805.5, intron 9 of 9) protein_coding-intron (ENSMUSG00000074513.9, intron 7 of 7) -20584 ENSMUSG00000041842.15 ENSMUSG00000041842 ENSMUST00000131065 Fhdc1 protein_coding Interval_129134 chr5 117628297 117628948 + 0 NA intron (ENSMUSG00000061578.8, intron 5 of 20) protein_coding-intron (ENSMUSG00000061578.8, intron 5 of 20) 107923 ENSMUSG00000107199.1 ENSMUSG00000107199 ENSMUST00000201553 Gm42550 TEC Interval_60567 chr15 75120159 75120731 + 0 NA Intergenic Intergenic -8508 ENSMUSG00000022584.14 ENSMUSG00000022584 ENSMUST00000191451 Ly6c2 protein_coding Interval_25229 chr11 45704027 45704660 + 0 NA Intergenic Intergenic 64960 ENSMUSG00000077320.1 ENSMUSG00000077320 ENSMUST00000104132 Gm22284 snoRNA Interval_127005 chr5 99437292 99438024 + 0 NA intron (ENSMUSG00000089809.9, intron 3 of 16) protein_coding-intron (ENSMUSG00000089809.9, intron 2 of 3) -70731 ENSMUSG00000104753.1 ENSMUSG00000104753 ENSMUST00000196037 Gm35172 lincRNA Interval_131151 chr5 135451435 135452403 + 0 NA TTS (ENSMUSG00000039959.13) protein_coding-TTS (ENSMUSG00000039959.13) 14008 ENSMUSG00000039959.13 ENSMUSG00000039959 ENSMUST00000202044 Hip1 protein_coding Interval_39319 chr12 86686883 86689275 + 0 NA intron (ENSMUSG00000021256.5, intron 3 of 6) protein_coding-intron (ENSMUSG00000021256.5, intron 3 of 6) 9379 ENSMUSG00000021256.5 ENSMUSG00000021256 ENSMUST00000021681 Vash1 protein_coding Interval_151860 chr7 127166400 127167112 + 0 NA Intergenic Intergenic 6449 ENSMUSG00000108717.1 ENSMUSG00000108717 ENSMUST00000206225 Gm44940 TEC Interval_99308 chr2 158839098 158839387 + 0 NA intron (ENSMUSG00000027655.14, intron 13 of 17) protein_coding-intron (ENSMUSG00000027655.14, intron 14 of 20) 11824 ENSMUSG00000027655.14 ENSMUSG00000027655 ENSMUST00000143195 Dhx35 protein_coding Interval_45017 chr13 51489094 51489333 + 0 NA intron (ENSMUSG00000021448.8, intron 2 of 11) protein_coding-intron (ENSMUSG00000021448.8, intron 2 of 11) -70527 ENSMUSG00000112959.1 ENSMUSG00000112959 ENSMUST00000220470 Gm32834 lincRNA Interval_39267 chr12 86336047 86337194 + 0 NA Intergenic Intergenic -11357 ENSMUSG00000113230.1 ENSMUSG00000113230 ENSMUST00000221001 Gm48101 processed_pseudogene Interval_163540 chr9 21980967 21981665 + 0 NA exon (ENSMUSG00000040146.9, exon 7 of 19) protein_coding-exon (ENSMUSG00000040146.9, exon 7 of 19) 8099 ENSMUSG00000040146.9 ENSMUSG00000040146 ENSMUST00000213130 Rgl3 protein_coding Interval_101788 chr3 9563488 9564027 + 0 NA intron (ENSMUSG00000040209.12, intron 1 of 9) protein_coding-intron (ENSMUSG00000040209.12, intron 2 of 8) 1542 ENSMUSG00000040209.12 ENSMUSG00000040209 ENSMUST00000192832 Zfp704 protein_coding Interval_99109 chr2 157270193 157270926 + 0 NA intron (ENSMUSG00000074627.11, intron 2 of 3) protein_coding-intron (ENSMUSG00000074627.11, intron 2 of 24) 8990 ENSMUSG00000074627.11 ENSMUSG00000074627 ENSMUST00000150035 Mroh8 protein_coding Interval_135149 chr6 36908255 36908562 + 0 NA intron (ENSMUSG00000038665.15, intron 27 of 32) protein_coding-intron (ENSMUSG00000038665.15, intron 27 of 32) -28640 ENSMUSG00000029837.2 ENSMUSG00000029837 ENSMUST00000031863 1700111E14Rik antisense Interval_10387 chr1 170208149 170208377 + 0 NA intron (ENSMUSG00000026667.14, intron 4 of 7) protein_coding-intron (ENSMUSG00000026667.14, intron 4 of 7) 6471 ENSMUSG00000026667.14 ENSMUSG00000026667 ENSMUST00000123399 Uhmk1 protein_coding Interval_84521 chr19 12134235 12134579 + 0 NA Intergenic Intergenic -11211 ENSMUSG00000067522.3 ENSMUSG00000067522 ENSMUST00000087822 Olfr76 protein_coding Interval_155536 chr8 34163407 34163745 + 0 NA intron (ENSMUSG00000031532.7, intron 2 of 5) protein_coding-intron (ENSMUSG00000031532.7, intron 2 of 5) 3136 ENSMUSG00000098785.1 ENSMUSG00000098785 ENSMUST00000183885 Mir6395 miRNA Interval_21092 chr10 126181770 126184692 + 0 NA Intergenic Intergenic 3092 ENSMUSG00000112632.1 ENSMUSG00000112632 ENSMUST00000218265 Gm4510 processed_pseudogene Interval_105205 chr3 83803352 83804102 + 0 NA intron (ENSMUSG00000104082.2, intron 1 of 6) unprocessed_pseudogene-intron (ENSMUSG00000104082.2, intron 1 of 6) 3759 ENSMUSG00000104082.2 ENSMUSG00000104082 ENSMUST00000193706 Gm7115 unprocessed_pseudogene Interval_85610 chr19 29060447 29060916 + 0 NA Intergenic Intergenic -6666 ENSMUSG00000118038.1 ENSMUSG00000118038 ENSMUST00000235636 Gm9895 lincRNA Interval_76540 chr17 80885303 80885584 + 0 NA Intergenic Intergenic -11350 ENSMUSG00000112121.1 ENSMUSG00000112121 ENSMUST00000220067 C230072F16Rik lincRNA Interval_160818 chr8 112710815 112711400 + 0 NA intron (ENSMUSG00000031772.17, intron 3 of 20) protein_coding-intron (ENSMUSG00000031772.17, intron 3 of 23) -62547 ENSMUSG00000031772.17 ENSMUSG00000031772 ENSMUST00000140753 Cntnap4 protein_coding Interval_85185 chr19 23507203 23508046 + 0 NA Intergenic Intergenic -59182 ENSMUSG00000033207.7 ENSMUSG00000033207 ENSMUST00000236349 Mamdc2 protein_coding Interval_156941 chr8 62036268 62036475 + 0 NA intron (ENSMUSG00000037921.15, intron 4 of 4) protein_coding-intron (ENSMUSG00000037921.15, intron 37 of 37) 86779 ENSMUSG00000031635.14 ENSMUSG00000031635 ENSMUST00000210799 Anxa10 protein_coding Interval_103067 chr3 34884791 34886369 + 0 NA Intergenic Intergenic 37071 ENSMUSG00000098862.1 ENSMUSG00000098862 ENSMUST00000183357 Mir6378 miRNA Interval_118287 chr4 130047374 130048320 + 0 NA promoter-TSS (ENSMUSG00000040690.15) protein_coding-promoter-TSS (ENSMUSG00000040690.15) -7208 ENSMUSG00000040690.15 ENSMUSG00000040690 ENSMUST00000135675 Col16a1 protein_coding Interval_167702 chr9 72148782 72149475 + 0 NA Intergenic Intergenic 20541 ENSMUSG00000099253.1 ENSMUSG00000099253 ENSMUST00000184700 Gm7863 processed_pseudogene Interval_51079 chr14 22106887 22107153 + 0 NA intron (ENSMUSG00000063458.13, intron 2 of 3) protein_coding-intron (ENSMUSG00000063458.13, intron 2 of 6) -70917 ENSMUSG00000114205.1 ENSMUSG00000114205 ENSMUST00000225573 Gm7480 antisense Interval_18523 chr10 86920421 86920737 + 0 NA intron (ENSMUSG00000035459.18, intron 9 of 10) protein_coding-intron (ENSMUSG00000035459.18, intron 30 of 68) 11100 ENSMUSG00000089775.1 ENSMUSG00000089775 ENSMUST00000160327 Gm16270 transcribed_processed_pseudogene Interval_88416 chr2 4954280 4954520 + 0 NA Intergenic Intergenic 1893 ENSMUSG00000082795.1 ENSMUSG00000082795 ENSMUST00000117275 Gm13193 processed_pseudogene Interval_59557 chr15 55266672 55268978 + 0 NA Intergenic Intergenic -5222 ENSMUSG00000095792.1 ENSMUSG00000095792 ENSMUST00000179457 Gm26296 snRNA Interval_159003 chr8 88641277 88641466 + 0 NA Intergenic Intergenic -5270 ENSMUSG00000031662.8 ENSMUSG00000031662 ENSMUST00000209806 Snx20 protein_coding Interval_106871 chr3 101436815 101437869 + 0 NA intron (ENSMUSG00000042035.11, intron 6 of 10) protein_coding-intron (ENSMUSG00000042035.11, intron 6 of 10) -11689 ENSMUSG00000106137.1 ENSMUSG00000106137 ENSMUST00000196233 Gm42538 antisense Interval_41775 chr12 118980267 118980479 + 0 NA Intergenic Intergenic 87057 ENSMUSG00000114030.1 ENSMUSG00000114030 ENSMUST00000221798 Gm18921 processed_pseudogene Interval_124314 chr5 43859921 43861399 + 0 NA Intergenic Intergenic -8200 ENSMUSG00000029084.5 ENSMUSG00000029084 ENSMUST00000196600 Cd38 protein_coding Interval_105460 chr3 86801615 86801900 + 0 NA intron (ENSMUSG00000028078.14, intron 10 of 15) protein_coding-intron (ENSMUSG00000028078.14, intron 10 of 15) -23104 ENSMUSG00000104108.1 ENSMUSG00000104108 ENSMUST00000194490 Gm37876 antisense Interval_109564 chr3 144479228 144479449 + 0 NA intron (ENSMUSG00000040151.9, intron 1 of 6) protein_coding-intron (ENSMUSG00000040151.9, intron 1 of 6) 17834 ENSMUSG00000104903.1 ENSMUSG00000104903 ENSMUST00000196451 Gm43707 sense_intronic Interval_159405 chr8 94377062 94377674 + 0 NA promoter-TSS (ENSMUSG00000089712.2) lincRNA-promoter-TSS (ENSMUSG00000089712.2) -504 ENSMUSG00000089712.2 ENSMUSG00000089712 ENSMUST00000159142 Gm15889 lincRNA Interval_105084 chr3 81077419 81077991 + 0 NA intron (ENSMUSG00000028019.9, intron 1 of 5) protein_coding-intron (ENSMUSG00000028019.9, intron 1 of 5) -37268 ENSMUSG00000085106.1 ENSMUSG00000085106 ENSMUST00000146657 Gm16000 antisense Interval_14721 chr10 39376424 39376925 + 0 NA intron (ENSMUSG00000019843.14, intron 1 of 12) protein_coding-intron (ENSMUSG00000019843.14, intron 1 of 13) -43335 ENSMUSG00000019843.14 ENSMUSG00000019843 ENSMUST00000123205 Fyn protein_coding Interval_171546 chr9 119128715 119128921 + 0 NA TTS (ENSMUSG00000038060.15) protein_coding-TTS (ENSMUSG00000038060.15) 21245 ENSMUSG00000010651.4 ENSMUSG00000010651 ENSMUST00000127952 Acaa1b protein_coding Interval_90160 chr2 28638514 28639098 + 0 NA Intergenic Intergenic -2422 ENSMUSG00000026812.16 ENSMUSG00000026812 ENSMUST00000139642 Tsc1 protein_coding Interval_12727 chr10 4522222 4522960 + 0 NA intron (ENSMUSG00000019767.12, intron 5 of 10) protein_coding-intron (ENSMUSG00000019767.12, intron 5 of 10) -10404 ENSMUSG00000019767.12 ENSMUSG00000019767 ENSMUST00000157064 Ccdc170 protein_coding Interval_97590 chr2 140189387 140190082 + 0 NA intron (ENSMUSG00000027384.6, intron 7 of 10) protein_coding-intron (ENSMUSG00000027384.6, intron 7 of 10) 18704 ENSMUSG00000027384.6 ENSMUSG00000027384 ENSMUST00000125913 Ndufaf5 protein_coding Interval_2076 chr1 36269007 36269892 + 0 NA exon (ENSMUSG00000047180.8, exon 2 of 4) protein_coding-exon (ENSMUSG00000047180.8, exon 2 of 4) 5230 ENSMUSG00000047180.8 ENSMUSG00000047180 ENSMUST00000188666 Neurl3 protein_coding Interval_38997 chr12 84367022 84367575 + 0 NA TTS (ENSMUSG00000021235.13) protein_coding-TTS (ENSMUSG00000021235.13) -3704 ENSMUSG00000021235.13 ENSMUSG00000021235 ENSMUST00000156592 Coq6 protein_coding Interval_121139 chr4 153433250 153433760 + 0 NA intron (ENSMUSG00000039546.9, intron 1 of 5) protein_coding-intron (ENSMUSG00000039546.9, intron 1 of 5) 48674 ENSMUSG00000039546.9 ENSMUSG00000039546 ENSMUST00000149177 Ajap1 protein_coding Interval_144444 chr7 25197693 25197926 + 0 NA Intergenic Intergenic 19916 ENSMUSG00000098325.1 ENSMUSG00000098325 ENSMUST00000184632 Mir7048 miRNA Interval_74500 chr17 52288792 52289040 + 0 NA Intergenic Intergenic -15651 ENSMUSG00000117076.1 ENSMUSG00000117076 ENSMUST00000232754 Gm41600 lincRNA Interval_34838 chr12 12412524 12413255 + 0 NA Intergenic Intergenic -20274 ENSMUSG00000114136.1 ENSMUSG00000114136 ENSMUST00000220545 4921511I17Rik antisense Interval_2079 chr1 36279162 36279647 + 0 NA Intergenic Intergenic -4725 ENSMUSG00000047180.8 ENSMUSG00000047180 ENSMUST00000188666 Neurl3 protein_coding Interval_4446 chr1 74248896 74250299 + 0 NA intron (ENSMUSG00000006304.14, intron 4 of 10) protein_coding-intron (ENSMUSG00000006304.14, intron 3 of 9) 13513 ENSMUSG00000006304.14 ENSMUSG00000006304 ENSMUST00000113819 Arpc2 protein_coding Interval_28754 chr11 78102852 78103210 + 0 NA intron (ENSMUSG00000037750.16, intron 1 of 2) protein_coding-intron (ENSMUSG00000037750.16, intron 1 of 2) -12575 ENSMUSG00000037750.16 ENSMUSG00000037750 ENSMUST00000155571 Fam222b protein_coding Interval_115820 chr4 105004211 105004936 + 0 NA intron (ENSMUSG00000078612.9, intron 15 of 19) protein_coding-intron (ENSMUSG00000078612.9, intron 15 of 19) -34444 ENSMUSG00000083791.1 ENSMUSG00000083791 ENSMUST00000120621 Gm12721 processed_pseudogene Interval_98537 chr2 153070724 153072617 + 0 NA TTS (ENSMUSG00000027474.13) protein_coding-TTS (ENSMUSG00000027474.13) 5715 ENSMUSG00000027474.13 ENSMUSG00000027474 ENSMUST00000109800 Ccm2l protein_coding Interval_125412 chr5 66793429 66793918 + 0 NA intron (ENSMUSG00000037736.20, intron 1 of 31) protein_coding-intron (ENSMUSG00000037736.20, intron 1 of 25) 75303 ENSMUSG00000107284.1 ENSMUSG00000107284 ENSMUST00000202958 Gm43280 TEC Interval_172184 chrX 8259639 8260043 + 0 NA Intergenic Intergenic -11292 ENSMUSG00000031170.14 ENSMUSG00000031170 ENSMUST00000115590 Slc38a5 protein_coding Interval_44950 chr13 50510752 50511287 + 0 NA Intergenic Intergenic -19278 ENSMUSG00000101136.1 ENSMUSG00000101136 ENSMUST00000185962 Gm8739 antisense Interval_33761 chr11 118326867 118327813 + 0 NA intron (ENSMUSG00000017466.9, intron 1 of 4) protein_coding-intron (ENSMUSG00000017466.9, intron 1 of 4) 6676 ENSMUSG00000076433.4 ENSMUSG00000076433 ENSMUST00000168100 Cep295nl protein_coding Interval_10732 chr1 173733064 173733664 + 0 NA intron (ENSMUSG00000073490.11, intron 3 of 7) protein_coding-intron (ENSMUSG00000073490.11, intron 3 of 7) 8383 ENSMUSG00000073490.11 ENSMUSG00000073490 ENSMUST00000127730 Ifi207 protein_coding Interval_49424 chr13 111894424 111895654 + 0 NA Intergenic Intergenic -10862 ENSMUSG00000082433.2 ENSMUSG00000082433 ENSMUST00000122415 Gm9025 processed_pseudogene Interval_42995 chr13 22709138 22709401 + 0 NA intron (ENSMUSG00000085221.2, intron 2 of 2) antisense-intron (ENSMUSG00000085221.2, intron 2 of 2) -17303 ENSMUSG00000083673.3 ENSMUSG00000083673 ENSMUST00000121014 Vmn1r-ps111 unprocessed_pseudogene Interval_20798 chr10 121016136 121019011 + 0 NA Intergenic Intergenic -16451 ENSMUSG00000020218.11 ENSMUSG00000020218 ENSMUST00000145691 Wif1 protein_coding Interval_39092 chr12 84994382 84994730 + 0 NA Intergenic Intergenic 14346 ENSMUSG00000021243.14 ENSMUSG00000021243 ENSMUST00000172241 Fcf1 protein_coding Interval_32301 chr11 106767285 106767719 + 0 NA TTS (ENSMUSG00000020718.12) protein_coding-TTS (ENSMUSG00000020718.12) -2761 ENSMUSG00000088400.1 ENSMUSG00000088400 ENSMUST00000157775 Gm25889 snRNA Interval_138504 chr6 88775138 88776487 + 0 NA intron (ENSMUSG00000033174.17, intron 3 of 7) protein_coding-intron (ENSMUSG00000033174.17, intron 3 of 7) 11639 ENSMUSG00000107719.1 ENSMUSG00000107719 ENSMUST00000204640 Gm43937 TEC Interval_70135 chr17 5702322 5702717 + 0 NA intron (ENSMUSG00000034265.8, intron 3 of 8) protein_coding-intron (ENSMUSG00000034265.8, intron 3 of 8) -96972 ENSMUSG00000096965.7 ENSMUSG00000096965 ENSMUST00000181392 3300005D01Rik lincRNA Interval_6532 chr1 114770408 114771256 + 0 NA Intergenic Intergenic 448931 ENSMUSG00000101687.1 ENSMUSG00000101687 ENSMUST00000185902 Gm4854 processed_pseudogene Interval_130524 chr5 128569087 128569709 + 0 NA Intergenic Intergenic 28558 ENSMUSG00000105059.1 ENSMUSG00000105059 ENSMUST00000199981 Gm42498 TEC Interval_19100 chr10 94550855 94551333 + 0 NA intron (ENSMUSG00000020023.18, intron 1 of 1) protein_coding-intron (ENSMUSG00000020023.18, intron 1 of 3) 242 ENSMUSG00000020023.18 ENSMUSG00000020023 ENSMUST00000117929 Tmcc3 protein_coding Interval_51180 chr14 24497456 24501091 + 0 NA Intergenic Intergenic 8555 ENSMUSG00000025290.17 ENSMUSG00000025290 ENSMUST00000224699 Rps24 protein_coding Interval_98294 chr2 150851041 150851249 + 0 NA intron (ENSMUSG00000032046.15, intron 2 of 12) protein_coding-intron (ENSMUSG00000032046.15, intron 2 of 12) -8575 ENSMUSG00000032046.15 ENSMUSG00000032046 ENSMUST00000129228 Abhd12 protein_coding Interval_25084 chr11 43754951 43755661 + 0 NA Intergenic Intergenic -7314 ENSMUSG00000041278.10 ENSMUSG00000041278 ENSMUST00000147984 Ttc1 protein_coding Interval_109998 chr3 152402434 152403233 + 0 NA intron (ENSMUSG00000039068.16, intron 1 of 13) protein_coding-intron (ENSMUSG00000039068.16, intron 1 of 13) 6701 ENSMUSG00000039068.16 ENSMUSG00000039068 ENSMUST00000135044 Zzz3 protein_coding Interval_87174 chr19 46607080 46609039 + 0 NA intron (ENSMUSG00000047731.17, intron 2 of 2) protein_coding-intron (ENSMUSG00000047731.17, intron 2 of 4) 8935 ENSMUSG00000047731.17 ENSMUSG00000047731 ENSMUST00000111855 Wbp1l protein_coding Interval_169113 chr9 92612154 92613108 + 0 NA exon (ENSMUSG00000101357.1, exon 1 of 1) processed_pseudogene-exon (ENSMUSG00000101357.1, exon 1 of 1) 346 ENSMUSG00000101357.1 ENSMUSG00000101357 ENSMUST00000191160 Gm2495 processed_pseudogene Interval_60471 chr15 74110414 74110717 + 0 NA Intergenic Intergenic -16232 ENSMUSG00000082585.3 ENSMUSG00000082585 ENSMUST00000120421 Gm15387 processed_pseudogene Interval_120437 chr4 148613489 148614351 + 0 NA exon (ENSMUSG00000028979.17, exon 11 of 11) protein_coding-exon (ENSMUSG00000028979.17, exon 11 of 11) 11352 ENSMUSG00000028979.17 ENSMUSG00000028979 ENSMUST00000136647 Masp2 protein_coding Interval_69265 chr16 91770072 91770301 + 0 NA intron (ENSMUSG00000022957.20, intron 1 of 6) protein_coding-intron (ENSMUSG00000022957.20, intron 1 of 28) -41589 ENSMUSG00000058240.14 ENSMUSG00000058240 ENSMUST00000123751 Cryzl1 protein_coding Interval_151997 chr7 128060124 128061065 + 0 NA Intergenic Intergenic 1266 ENSMUSG00000064677.1 ENSMUSG00000064677 ENSMUST00000082743 Gm22809 snRNA Interval_34759 chr12 10390487 10391515 + 0 NA TTS (ENSMUSG00000020622.17) protein_coding-TTS (ENSMUSG00000020622.17) 229 ENSMUSG00000020621.6 ENSMUSG00000020621 ENSMUST00000020947 Rdh14 protein_coding Interval_130651 chr5 129483742 129484127 + 0 NA Intergenic Intergenic 17067 ENSMUSG00000104873.1 ENSMUSG00000104873 ENSMUST00000199847 Gm40332 TEC Interval_122257 chr5 20716241 20716856 + 0 NA Intergenic Intergenic -11846 ENSMUSG00000105036.1 ENSMUSG00000105036 ENSMUST00000200372 1110060G06Rik TEC Interval_38439 chr12 79039788 79040128 + 0 NA intron (ENSMUSG00000060716.7, intron 1 of 28) protein_coding-intron (ENSMUSG00000060716.7, intron 1 of 28) 4322 ENSMUSG00000060716.7 ENSMUSG00000060716 ENSMUST00000219946 Plekhh1 protein_coding Interval_170425 chr9 107881284 107882229 + 0 NA Intergenic Intergenic -6395 ENSMUSG00000032583.7 ENSMUSG00000032583 ENSMUST00000035202 Mon1a protein_coding Interval_18200 chr10 83657408 83657668 + 0 NA Intergenic Intergenic -1733 ENSMUSG00000112072.1 ENSMUSG00000112072 ENSMUST00000218849 Gm47244 processed_pseudogene Interval_53133 chr14 54634334 54634659 + 0 NA intron (ENSMUSG00000059674.7, intron 8 of 11) protein_coding-intron (ENSMUSG00000059674.7, intron 8 of 11) 3045 ENSMUSG00000059674.7 ENSMUSG00000059674 ENSMUST00000227124 Cdh24 protein_coding Interval_26 GL456211.1 145390 145969 + 0 NA NA NA NA NA Interval_13696 chr10 21109523 21110424 + 0 NA Intergenic Intergenic 9413 ENSMUSG00000111102.1 ENSMUSG00000111102 ENSMUST00000215135 Gm48189 lincRNA Interval_85894 chr19 32793650 32794813 + 0 NA intron (ENSMUSG00000013663.7, intron 3 of 4) protein_coding-intron (ENSMUSG00000013663.7, intron 3 of 8) -16994 ENSMUSG00000013663.7 ENSMUSG00000013663 ENSMUST00000154806 Pten protein_coding Interval_82957 chr18 80004843 80005504 + 0 NA Intergenic Intergenic -7217 ENSMUSG00000117759.1 ENSMUSG00000117759 ENSMUST00000235145 AA684185 transcribed_processed_pseudogene Interval_130745 chr5 130096690 130097479 + 0 NA intron (ENSMUSG00000034118.15, intron 1 of 1) protein_coding-intron (ENSMUSG00000034118.15, intron 1 of 5) 3495 ENSMUSG00000034118.15 ENSMUSG00000034118 ENSMUST00000128335 Tpst1 protein_coding Interval_113071 chr4 47487736 47488658 + 0 NA Intergenic Intergenic 13433 ENSMUSG00000053317.11 ENSMUSG00000053317 ENSMUST00000136685 Sec61b protein_coding Interval_142892 chr6 146755261 146755938 + 0 NA intron (ENSMUSG00000001630.13, intron 1 of 1) protein_coding-intron (ENSMUSG00000001630.13, intron 1 of 13) -6982 ENSMUSG00000108108.1 ENSMUSG00000108108 ENSMUST00000203084 Gm44270 TEC Interval_32863 chr11 112501684 112502305 + 0 NA Intergenic Intergenic 209346 ENSMUSG00000041674.16 ENSMUSG00000041674 ENSMUST00000148724 BC006965 processed_transcript Interval_147883 chr7 75070161 75070671 + 0 NA intron (ENSMUSG00000108803.1, intron 7 of 7) lincRNA-intron (ENSMUSG00000108803.1, intron 7 of 7) 40183 ENSMUSG00000108803.1 ENSMUSG00000108803 ENSMUST00000206684 4930533N22Rik lincRNA Interval_163622 chr9 22649918 22650200 + 0 NA intron (ENSMUSG00000035919.16, intron 14 of 21) protein_coding-intron (ENSMUSG00000035919.16, intron 14 of 21) 20469 ENSMUSG00000089958.1 ENSMUSG00000089958 ENSMUST00000160140 Gm16165 processed_pseudogene Interval_172438 chrX 20291030 20292280 + 0 NA exon (ENSMUSG00000037341.14, exon 1 of 17) protein_coding-exon (ENSMUSG00000037341.14, exon 1 of 17) -47644 ENSMUSG00000087415.4 ENSMUSG00000087415 ENSMUST00000117894 Gm14529 processed_pseudogene Interval_63420 chr15 100961706 100962463 + 0 NA TTS (ENSMUSG00000023033.14) protein_coding-TTS (ENSMUSG00000023033.14) -8038 ENSMUSG00000023033.14 ENSMUSG00000023033 ENSMUST00000201246 Scn8a protein_coding Interval_128990 chr5 116483865 116484548 + 0 NA intron (ENSMUSG00000063919.11, intron 1 of 12) protein_coding-intron (ENSMUSG00000063919.11, intron 1 of 12) -16618 ENSMUSG00000063919.11 ENSMUSG00000063919 ENSMUST00000201430 Srrm4 protein_coding Interval_10095 chr1 165763008 165764700 + 0 NA exon (ENSMUSG00000040713.12, exon 1 of 4) protein_coding-exon (ENSMUSG00000040713.12, exon 1 of 4) 108 ENSMUSG00000040713.12 ENSMUSG00000040713 ENSMUST00000040298 Creg1 protein_coding Interval_88556 chr2 6098836 6102111 + 0 NA TTS (ENSMUSG00000045319.13) protein_coding-TTS (ENSMUSG00000045319.13) 29708 ENSMUSG00000045319.13 ENSMUSG00000045319 ENSMUST00000194054 Proser2 protein_coding Interval_150780 chr7 114356307 114356651 + 0 NA intron (ENSMUSG00000087475.3, intron 3 of 4) lincRNA-intron (ENSMUSG00000087475.3, intron 3 of 4) 58682 ENSMUSG00000087475.3 ENSMUSG00000087475 ENSMUST00000124673 4933406I18Rik lincRNA Interval_7533 chr1 132049842 132050336 + 0 NA intron (ENSMUSG00000059149.17, intron 3 of 6) protein_coding-intron (ENSMUSG00000059149.17, intron 3 of 6) -8173 ENSMUSG00000059149.17 ENSMUSG00000059149 ENSMUST00000162628 Mfsd4a protein_coding Interval_91749 chr2 49158419 49158655 + 0 NA intron (ENSMUSG00000036792.12, intron 5 of 7) protein_coding-intron (ENSMUSG00000036792.12, intron 5 of 10) -26481 ENSMUSG00000080937.1 ENSMUSG00000080937 ENSMUST00000118659 Gm13510 processed_pseudogene Interval_152214 chr7 130689999 130690800 + 0 NA intron (ENSMUSG00000030852.18, intron 2 of 15) protein_coding-intron (ENSMUSG00000030852.18, intron 4 of 20) -23278 ENSMUSG00000030852.18 ENSMUSG00000030852 ENSMUST00000207230 Tacc2 protein_coding Interval_50503 chr14 14290751 14291021 + 0 NA Intergenic Intergenic 3790 ENSMUSG00000114768.1 ENSMUSG00000114768 ENSMUST00000224316 Gm48857 lincRNA Interval_165085 chr9 44482554 44484060 + 0 NA exon (ENSMUSG00000111312.1, exon 1 of 1) TEC-exon (ENSMUSG00000111312.1, exon 1 of 1) 482 ENSMUSG00000063382.6 ENSMUSG00000063382 ENSMUST00000218913 Bcl9l protein_coding Interval_133478 chr6 5495937 5497063 + 0 NA promoter-TSS (ENSMUSG00000019577.6) protein_coding-promoter-TSS (ENSMUSG00000019577.6) -239 ENSMUSG00000019577.6 ENSMUSG00000019577 ENSMUST00000134068 Pdk4 protein_coding Interval_26646 chr11 59443051 59444766 + 0 NA intron (ENSMUSG00000009894.15, intron 1 of 3) protein_coding-intron (ENSMUSG00000009894.15, intron 1 of 4) 6091 ENSMUSG00000009894.15 ENSMUSG00000009894 ENSMUST00000125846 Snap47 protein_coding Interval_141063 chr6 124759278 124759597 + 0 NA TTS (ENSMUSG00000004267.16) protein_coding-TTS (ENSMUSG00000004267.16) -3383 ENSMUSG00000004263.15 ENSMUSG00000004263 ENSMUST00000146872 Atn1 protein_coding Interval_41369 chr12 113119449 113119901 + 0 NA intron (ENSMUSG00000021144.14, intron 3 of 19) protein_coding-intron (ENSMUSG00000021144.14, intron 3 of 20) -11873 ENSMUSG00000021144.14 ENSMUSG00000021144 ENSMUST00000156030 Mta1 protein_coding Interval_13134 chr10 12116855 12117142 + 0 NA Intergenic Intergenic -85558 ENSMUSG00000112775.1 ENSMUSG00000112775 ENSMUST00000220015 Gm48722 lincRNA Interval_58600 chr15 36488352 36488856 + 0 NA intron (ENSMUSG00000048307.8, intron 2 of 3) protein_coding-intron (ENSMUSG00000048307.8, intron 2 of 4) 8111 ENSMUSG00000048307.8 ENSMUSG00000048307 ENSMUST00000228941 Ankrd46 protein_coding Interval_14074 chr10 26566239 26567889 + 0 NA Intergenic Intergenic -43683 ENSMUSG00000111882.2 ENSMUSG00000111882 ENSMUST00000218590 Gm48864 unitary_pseudogene Interval_96207 chr2 120531840 120532278 + 0 NA promoter-TSS (ENSMUSG00000027288.16) protein_coding-promoter-TSS (ENSMUSG00000027288.16) 7801 ENSMUSG00000027288.16 ENSMUSG00000027288 ENSMUST00000147353 Zfp106 protein_coding Interval_150962 chr7 116781655 116782264 + 0 NA Intergenic Intergenic 22540 ENSMUSG00000108740.1 ENSMUSG00000108740 ENSMUST00000206542 Gm6008 processed_pseudogene Interval_21325 chr10 127970883 127971891 + 0 NA Intergenic Intergenic 9831 ENSMUSG00000112446.1 ENSMUSG00000112446 ENSMUST00000218406 Gm47949 processed_pseudogene Interval_3992 chr1 65735831 65736149 + 0 NA Intergenic Intergenic 183308 ENSMUSG00000082774.1 ENSMUSG00000082774 ENSMUST00000117848 Gm8805 processed_pseudogene Interval_106550 chr3 97172241 97172684 + 0 NA promoter-TSS (ENSMUSG00000028093.15) protein_coding-promoter-TSS (ENSMUSG00000028093.15) 13366 ENSMUSG00000028093.15 ENSMUSG00000028093 ENSMUST00000198329 Acp6 protein_coding Interval_147960 chr7 75890072 75890563 + 0 NA Intergenic Intergenic 41920 ENSMUSG00000055652.14 ENSMUSG00000055652 ENSMUST00000205887 Klhl25 protein_coding Interval_125571 chr5 71923435 71923975 + 0 NA intron (ENSMUSG00000029212.11, intron 5 of 7) protein_coding-intron (ENSMUSG00000029212.11, intron 4 of 8) 109783 ENSMUSG00000080736.1 ENSMUSG00000080736 ENSMUST00000118973 Gm15617 processed_pseudogene Interval_62246 chr15 89149022 89150301 + 0 NA promoter-TSS (ENSMUSG00000053137.7) protein_coding-promoter-TSS (ENSMUSG00000053137.7) -167 ENSMUSG00000053137.7 ENSMUSG00000053137 ENSMUST00000228967 Mapk11 protein_coding Interval_51826 chr14 32525773 32527518 + 0 NA exon (ENSMUSG00000054051.7, exon 5 of 21) protein_coding-exon (ENSMUSG00000054051.7, exon 5 of 21) -25930 ENSMUSG00000054051.7 ENSMUSG00000054051 ENSMUST00000228549 Ercc6 protein_coding Interval_164226 chr9 32939680 32940916 + 0 NA Intergenic Intergenic -11332 ENSMUSG00000099025.1 ENSMUSG00000099025 ENSMUST00000185169 Gm27162 lincRNA Interval_26455 chr11 57956942 57958857 + 0 NA Intergenic Intergenic -8814 ENSMUSG00000083657.1 ENSMUSG00000083657 ENSMUST00000117266 Gm12245 processed_pseudogene Interval_225 KV575238.1 100155 101574 + 0 NA NA NA NA NA Interval_43788 chr13 36444783 36445401 + 0 NA intron (ENSMUSG00000021420.13, intron 6 of 7) protein_coding-intron (ENSMUSG00000021420.13, intron 6 of 6) 14188 ENSMUSG00000114714.1 ENSMUSG00000114714 ENSMUST00000224213 Gm48763 TEC Interval_151142 chr7 118789672 118790328 + 0 NA intron (ENSMUSG00000030982.19, intron 14 of 29) protein_coding-intron (ENSMUSG00000030982.19, intron 7 of 23) 4857 ENSMUSG00000109379.1 ENSMUSG00000109379 ENSMUST00000207311 Gm44550 TEC Interval_80025 chr18 36707753 36708613 + 0 NA Intergenic Intergenic -14610 ENSMUSG00000044719.5 ENSMUSG00000044719 ENSMUST00000235134 E230025N22Rik protein_coding Interval_48656 chr13 100879618 100880053 + 0 NA intron (ENSMUSG00000100596.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000100596.1, intron 1 of 2) 7055 ENSMUSG00000104450.1 ENSMUSG00000104450 ENSMUST00000195282 Gm37830 TEC Interval_145778 chr7 38227181 38228466 + 0 NA intron (ENSMUSG00000074170.5, intron 1 of 1) protein_coding-intron (ENSMUSG00000074170.5, intron 1 of 1) 193 ENSMUSG00000074170.5 ENSMUSG00000074170 ENSMUST00000098513 Plekhf1 protein_coding Interval_43214 chr13 25400546 25400837 + 0 NA Intergenic Intergenic 29436 ENSMUSG00000114427.1 ENSMUSG00000114427 ENSMUST00000223668 F830002E08Rik TEC Interval_32607 chr11 109109527 109110637 + 0 NA Intergenic Intergenic 34287 ENSMUSG00000078605.2 ENSMUSG00000078605 ENSMUST00000106710 E030025P04Rik protein_coding Interval_37250 chr12 63020587 63021396 + 0 NA Intergenic Intergenic 52153 ENSMUSG00000058933.5 ENSMUSG00000058933 ENSMUST00000080271 Gm5185 processed_pseudogene Interval_113194 chr4 49480332 49481588 + 0 NA Intergenic Intergenic 6653 ENSMUSG00000084479.1 ENSMUSG00000084479 ENSMUST00000122530 Gm26424 snRNA Interval_60679 chr15 76125409 76125810 + 0 NA promoter-TSS (ENSMUSG00000044361.16) protein_coding-promoter-TSS (ENSMUSG00000044361.16) -270 ENSMUSG00000044361.16 ENSMUSG00000044361 ENSMUST00000226663 BC024139 protein_coding Interval_111525 chr4 22463203 22463784 + 0 NA Intergenic Intergenic 24873 ENSMUSG00000095139.2 ENSMUSG00000095139 ENSMUST00000178174 Pou3f2 protein_coding Interval_7103 chr1 125821306 125821500 + 0 NA intron (ENSMUSG00000026343.6, intron 1 of 1) protein_coding-intron (ENSMUSG00000026343.6, intron 1 of 1) -18600 ENSMUSG00000026343.6 ENSMUSG00000026343 ENSMUST00000159359 Gpr39 protein_coding Interval_83709 chr19 3881491 3881986 + 0 NA intron (ENSMUSG00000024843.15, intron 2 of 7) protein_coding-intron (ENSMUSG00000024843.15, intron 3 of 11) -14065 ENSMUSG00000117912.1 ENSMUSG00000117912 ENSMUST00000235621 Gm50383 antisense Interval_163527 chr9 21869364 21869733 + 0 NA Intergenic Intergenic -2726 ENSMUSG00000111766.1 ENSMUSG00000111766 ENSMUST00000216356 Gm47873 unitary_pseudogene Interval_108302 chr3 123495774 123496154 + 0 NA intron (ENSMUSG00000027978.9, intron 9 of 10) protein_coding-intron (ENSMUSG00000027978.9, intron 9 of 10) 12102 ENSMUSG00000092730.1 ENSMUSG00000092730 ENSMUST00000174989 Snora24 snoRNA Interval_36515 chr12 48130205 48130506 + 0 NA Intergenic Intergenic -82821 ENSMUSG00000111984.1 ENSMUSG00000111984 ENSMUST00000218240 Gm46327 unprocessed_pseudogene Interval_67077 chr16 42657024 42657300 + 0 NA Intergenic Intergenic -6764 ENSMUSG00000116679.1 ENSMUSG00000116679 ENSMUST00000232064 Gm49739 processed_pseudogene Interval_2275 chr1 37628989 37629291 + 0 NA intron (ENSMUSG00000026090.16, intron 5 of 9) protein_coding-intron (ENSMUSG00000026090.16, intron 5 of 9) 14881 ENSMUSG00000089767.1 ENSMUSG00000089767 ENSMUST00000160659 4930556I23Rik antisense Interval_147267 chr7 65300413 65300811 + 0 NA intron (ENSMUSG00000030516.14, intron 26 of 27) protein_coding-intron (ENSMUSG00000030516.14, intron 25 of 26) 66170 ENSMUSG00000108338.1 ENSMUSG00000108338 ENSMUST00000206550 Gm44794 TEC Interval_145967 chr7 42726209 42727170 + 0 NA intron (ENSMUSG00000091594.2, intron 1 of 3) protein_coding-intron (ENSMUSG00000091594.2, intron 1 of 3) -7720 ENSMUSG00000092554.1 ENSMUSG00000092554 ENSMUST00000172625 Gm18128 processed_pseudogene Interval_28543 chr11 76621939 76625214 + 0 NA promoter-TSS (ENSMUSG00000017631.19) protein_coding-promoter-TSS (ENSMUSG00000017631.19) -18 ENSMUSG00000017631.19 ENSMUSG00000017631 ENSMUST00000137261 Abr protein_coding Interval_169439 chr9 97307835 97308321 + 0 NA Intergenic Intergenic 18892 ENSMUSG00000104167.1 ENSMUSG00000104167 ENSMUST00000192385 A030012G06Rik TEC Interval_94828 chr2 95518679 95518863 + 0 NA Intergenic Intergenic 124529 ENSMUSG00000084906.1 ENSMUSG00000084906 ENSMUST00000148637 Gm13794 lincRNA Interval_41644 chr12 117325212 117326147 + 0 NA intron (ENSMUSG00000101930.1, intron 1 of 1) antisense-intron (ENSMUSG00000101930.1, intron 1 of 1) 11333 ENSMUSG00000101930.1 ENSMUSG00000101930 ENSMUST00000186454 Gm5441 antisense Interval_124635 chr5 52626260 52626480 + 0 NA Intergenic Intergenic -7358 ENSMUSG00000052295.4 ENSMUSG00000052295 ENSMUST00000064097 8030423F21Rik lincRNA Interval_164240 chr9 33769950 33770245 + 0 NA Intergenic Intergenic 41850 ENSMUSG00000079884.6 ENSMUSG00000079884 ENSMUST00000182663 Gm10698 processed_pseudogene Interval_131095 chr5 135072200 135073826 + 0 NA exon (ENSMUSG00000043614.13, exon 4 of 4) protein_coding-exon (ENSMUSG00000043614.13, exon 4 of 4) 5253 ENSMUSG00000043614.13 ENSMUSG00000043614 ENSMUST00000076203 Vps37d protein_coding Interval_50201 chr14 9634370 9634783 + 0 NA intron (ENSMUSG00000060579.13, intron 4 of 5) protein_coding-intron (ENSMUSG00000060579.13, intron 8 of 9) -165021 ENSMUSG00000114298.1 ENSMUSG00000114298 ENSMUST00000224617 Gm48371 lincRNA Interval_117886 chr4 126880716 126881264 + 0 NA intron (ENSMUSG00000042446.16, intron 19 of 23) protein_coding-intron (ENSMUSG00000042446.16, intron 25 of 29) -19878 ENSMUSG00000088984.1 ENSMUSG00000088984 ENSMUST00000158359 Gm25604 snoRNA Interval_10488 chr1 171280438 171281880 + 0 NA promoter-TSS (ENSMUSG00000062729.11) protein_coding-promoter-TSS (ENSMUSG00000062729.11) -399 ENSMUSG00000062729.11 ENSMUSG00000062729 ENSMUST00000133050 Ppox protein_coding Interval_147885 chr7 75102688 75102938 + 0 NA Intergenic Intergenic 44913 ENSMUSG00000053025.13 ENSMUSG00000053025 ENSMUST00000206236 Sv2b protein_coding Interval_171780 chr9 121010669 121012082 + 0 NA intron (ENSMUSG00000040936.15, intron 1 of 2) protein_coding-intron (ENSMUSG00000040936.15, intron 1 of 2) -50868 ENSMUSG00000040936.15 ENSMUSG00000040936 ENSMUST00000164969 Ulk4 protein_coding Interval_27287 chr11 65341925 65342676 + 0 NA intron (ENSMUSG00000085162.7, intron 1 of 3) lincRNA-intron (ENSMUSG00000085162.7, intron 1 of 3) 23498 ENSMUSG00000085162.7 ENSMUSG00000085162 ENSMUST00000130362 Gm12295 lincRNA Interval_61963 chr15 85529801 85531258 + 0 NA Intergenic Intergenic 19717 ENSMUSG00000063548.3 ENSMUSG00000063548 ENSMUST00000079690 Gm4825 processed_pseudogene Interval_129953 chr5 123276318 123276857 + 0 NA intron (ENSMUSG00000029442.18, intron 2 of 11) protein_coding-intron (ENSMUSG00000029442.18, intron 7 of 21) -1541 ENSMUSG00000029442.18 ENSMUSG00000029442 ENSMUST00000125979 Wdr66 protein_coding Interval_114243 chr4 69852720 69852947 + 0 NA Intergenic Intergenic -1114 ENSMUSG00000085627.2 ENSMUSG00000085627 ENSMUST00000119005 Gm11222 processed_pseudogene Interval_165315 chr9 46219837 46220066 + 0 NA intron (ENSMUSG00000034135.15, intron 18 of 20) protein_coding-intron (ENSMUSG00000034135.15, intron 21 of 22) -8770 ENSMUSG00000032083.8 ENSMUSG00000032083 ENSMUST00000132155 Apoa1 protein_coding Interval_56719 chr14 121636245 121636811 + 0 NA intron (ENSMUSG00000025558.19, intron 13 of 55) protein_coding-intron (ENSMUSG00000025558.19, intron 13 of 53) 102333 ENSMUSG00000025558.19 ENSMUSG00000025558 ENSMUST00000238406 Dock9 protein_coding Interval_122070 chr5 16072299 16073427 + 0 NA intron (ENSMUSG00000040118.15, intron 1 of 7) protein_coding-intron (ENSMUSG00000040118.15, intron 3 of 38) -34266 ENSMUSG00000105526.1 ENSMUSG00000105526 ENSMUST00000197593 Gm43490 TEC Interval_52417 chr14 45850291 45850457 + 0 NA intron (ENSMUSG00000085866.1, intron 1 of 3) lincRNA-intron (ENSMUSG00000085866.1, intron 1 of 3) 8172 ENSMUSG00000084276.1 ENSMUSG00000084276 ENSMUST00000121261 Gm8317 processed_pseudogene Interval_165267 chr9 45905933 45907344 + 0 NA promoter-TSS (ENSMUSG00000042790.16) protein_coding-promoter-TSS (ENSMUSG00000042790.16) -247 ENSMUSG00000042790.16 ENSMUSG00000042790 ENSMUST00000215005 Rnf214 protein_coding Interval_6588 chr1 117778837 117779038 + 0 NA Intergenic Intergenic -2196 ENSMUSG00000101303.1 ENSMUSG00000101303 ENSMUST00000188801 B020011L13Rik protein_coding Interval_168958 chr9 89687643 89688066 + 0 NA Intergenic Intergenic 16969 ENSMUSG00000032353.9 ENSMUSG00000032353 ENSMUST00000188808 Tmed3 protein_coding Interval_167559 chr9 70463308 70463507 + 0 NA intron (ENSMUSG00000032217.13, intron 4 of 14) protein_coding-intron (ENSMUSG00000032217.13, intron 4 of 14) -9561 ENSMUSG00000032217.13 ENSMUSG00000032217 ENSMUST00000213694 Rnf111 protein_coding Interval_50448 chr14 13440783 13441037 + 0 NA intron (ENSMUSG00000056296.17, intron 1 of 5) protein_coding-intron (ENSMUSG00000056296.17, intron 2 of 5) -86830 ENSMUSG00000081115.2 ENSMUSG00000081115 ENSMUST00000118492 Gm15913 processed_pseudogene Interval_99395 chr2 160580986 160581734 + 0 NA intron (ENSMUSG00000078956.3, intron 1 of 2) lincRNA-intron (ENSMUSG00000078956.3, intron 1 of 2) -1997 ENSMUSG00000078955.3 ENSMUSG00000078955 ENSMUST00000128681 Gm14222 sense_intronic Interval_61600 chr15 82898743 82900252 + 0 NA intron (ENSMUSG00000100199.1, intron 1 of 3) protein_coding-intron (ENSMUSG00000041852.15, intron 1 of 4) 314 ENSMUSG00000041852.15 ENSMUSG00000041852 ENSMUST00000229439 Tcf20 protein_coding Interval_133640 chr6 7928864 7929328 + 0 NA Intergenic Intergenic 49533 ENSMUSG00000084418.1 ENSMUSG00000084418 ENSMUST00000122469 Gm22276 snoRNA Interval_151391 chr7 122044149 122044508 + 0 NA exon (ENSMUSG00000030871.11, exon 7 of 9) protein_coding-exon (ENSMUSG00000030871.11, exon 7 of 9) 22683 ENSMUSG00000030871.11 ENSMUSG00000030871 ENSMUST00000033159 Ears2 protein_coding Interval_133978 chr6 17236942 17237467 + 0 NA intron (ENSMUSG00000085264.1, intron 1 of 4) antisense-intron (ENSMUSG00000085264.1, intron 1 of 4) 39097 ENSMUSG00000085171.7 ENSMUSG00000085171 ENSMUST00000124434 D830026I12Rik lincRNA Interval_129373 chr5 119605783 119606006 + 0 NA intron (ENSMUSG00000087516.7, intron 1 of 5) antisense-intron (ENSMUSG00000087516.7, intron 1 of 5) -7690 ENSMUSG00000106991.1 ENSMUSG00000106991 ENSMUST00000202546 Gm43399 TEC Interval_80946 chr18 50852397 50853002 + 0 NA Intergenic Intergenic -150405 ENSMUSG00000118088.1 ENSMUSG00000118088 ENSMUST00000236182 Gm3815 processed_pseudogene Interval_112185 chr4 35297966 35298327 + 0 NA Intergenic Intergenic -71971 ENSMUSG00000028300.14 ENSMUSG00000028300 ENSMUST00000149138 C9orf72 protein_coding Interval_148946 chr7 90238477 90239211 + 0 NA intron (ENSMUSG00000030617.13, intron 6 of 10) protein_coding-intron (ENSMUSG00000030617.13, intron 6 of 7) 26933 ENSMUSG00000030617.13 ENSMUSG00000030617 ENSMUST00000207819 Ccdc83 protein_coding Interval_146032 chr7 43333301 43334226 + 0 NA Intergenic Intergenic -10787 ENSMUSG00000108300.1 ENSMUSG00000108300 ENSMUST00000206010 Gm44539 processed_pseudogene Interval_97258 chr2 132692003 132692809 + 0 NA intron (ENSMUSG00000044991.10, intron 2 of 2) protein_coding-intron (ENSMUSG00000044991.10, intron 2 of 2) 2249 ENSMUSG00000044991.10 ENSMUSG00000044991 ENSMUST00000141460 Shld1 protein_coding Interval_85336 chr19 24899270 24900879 + 0 NA exon (ENSMUSG00000051490.3, exon 1 of 1) protein_coding-exon (ENSMUSG00000051490.3, exon 1 of 1) 1123 ENSMUSG00000051490.3 ENSMUSG00000051490 ENSMUST00000058600 Foxd4 protein_coding Interval_173341 chrX 82238300 82239004 + 0 NA Intergenic Intergenic 50970 ENSMUSG00000064781.2 ENSMUSG00000064781 ENSMUST00000082847 Gm22686 snRNA Interval_10074 chr1 165617313 165618499 + 0 NA intron (ENSMUSG00000026566.15, intron 1 of 2) protein_coding-intron (ENSMUSG00000026566.15, intron 1 of 4) -4016 ENSMUSG00000103098.1 ENSMUSG00000103098 ENSMUST00000193556 Gm37559 processed_pseudogene Interval_48244 chr13 97403686 97404005 + 0 NA Intergenic Intergenic 27611 ENSMUSG00000114425.1 ENSMUSG00000114425 ENSMUST00000223964 Gm33447 lincRNA Interval_8397 chr1 138831558 138832534 + 0 NA TTS (ENSMUSG00000019230.14) protein_coding-TTS (ENSMUSG00000019230.14) 10408 ENSMUSG00000019230.14 ENSMUSG00000019230 ENSMUST00000194557 Lhx9 protein_coding Interval_108855 chr3 132707182 132707476 + 0 NA intron (ENSMUSG00000028030.12, intron 4 of 25) protein_coding-intron (ENSMUSG00000028030.12, intron 4 of 23) 23161 ENSMUSG00000028030.12 ENSMUSG00000028030 ENSMUST00000196491 Tbck protein_coding Interval_71183 chr17 20971593 20973439 + 0 NA Intergenic Intergenic -3032 ENSMUSG00000093429.1 ENSMUSG00000093429 ENSMUST00000175863 Vmn1r-ps145 unprocessed_pseudogene Interval_56740 chr14 121776525 121776972 + 0 NA intron (ENSMUSG00000025558.19, intron 1 of 52) protein_coding-intron (ENSMUSG00000025558.19, intron 1 of 52) -37887 ENSMUSG00000025558.19 ENSMUSG00000025558 ENSMUST00000238406 Dock9 protein_coding Interval_135689 chr6 43390365 43390757 + 0 NA intron (ENSMUSG00000029735.17, intron 6 of 6) protein_coding-intron (ENSMUSG00000029735.17, intron 8 of 8) 16756 ENSMUSG00000084325.2 ENSMUSG00000084325 ENSMUST00000120824 Gm15550 processed_pseudogene Interval_46445 chr13 65303633 65304006 + 0 NA exon (ENSMUSG00000021514.18, exon 8 of 8) protein_coding-exon (ENSMUSG00000021514.18, exon 8 of 8) 1413 ENSMUSG00000021514.18 ENSMUSG00000021514 ENSMUST00000222364 Zfp369 protein_coding Interval_103680 chr3 51587699 51588171 + 0 NA Intergenic Intergenic 5629 ENSMUSG00000104075.1 ENSMUSG00000104075 ENSMUST00000193978 5430433H01Rik TEC Interval_94816 chr2 94678837 94679163 + 0 NA Intergenic Intergenic 51738 ENSMUSG00000087069.1 ENSMUSG00000087069 ENSMUST00000124214 Gm13793 lincRNA Interval_108753 chr3 131057230 131057531 + 0 NA Intergenic Intergenic -31010 ENSMUSG00000104859.1 ENSMUSG00000104859 ENSMUST00000197848 A430072C10Rik TEC Interval_137374 chr6 71769876 71771526 + 0 NA intron (ENSMUSG00000052852.8, intron 3 of 4) protein_coding-intron (ENSMUSG00000052852.8, intron 3 of 6) -19967 ENSMUSG00000108802.1 ENSMUSG00000108802 ENSMUST00000206120 Gm44769 TEC Interval_56797 chr14 122139719 122140998 + 0 NA intron (ENSMUSG00000025544.13, intron 6 of 16) protein_coding-intron (ENSMUSG00000025544.13, intron 6 of 16) 18805 ENSMUSG00000090674.1 ENSMUSG00000090674 ENSMUST00000166043 Gm17082 processed_pseudogene Interval_42812 chr13 19921019 19921723 + 0 NA Intergenic Intergenic 74433 ENSMUSG00000050243.6 ENSMUSG00000050243 ENSMUST00000091762 Gm5446 processed_pseudogene Interval_38027 chr12 74125002 74126640 + 0 NA intron (ENSMUSG00000044912.11, intron 1 of 3) protein_coding-intron (ENSMUSG00000044912.11, intron 1 of 7) -36396 ENSMUSG00000044912.11 ENSMUSG00000044912 ENSMUST00000238790 Syt16 protein_coding Interval_96284 chr2 121289043 121290145 + 0 NA promoter-TSS (ENSMUSG00000027254.13) protein_coding-promoter-TSS (ENSMUSG00000027254.13) -5869 ENSMUSG00000027254.13 ENSMUSG00000027254 ENSMUST00000133283 Map1a protein_coding Interval_82639 chr18 75563969 75564659 + 0 NA intron (ENSMUSG00000052928.9, intron 7 of 11) protein_coding-intron (ENSMUSG00000052928.9, intron 7 of 11) 49669 ENSMUSG00000097712.1 ENSMUSG00000097712 ENSMUST00000181913 Gm10532 antisense Interval_118606 chr4 132737228 132738579 + 0 NA intron (ENSMUSG00000028885.8, intron 7 of 7) protein_coding-intron (ENSMUSG00000028885.8, intron 7 of 7) -5375 ENSMUSG00000037752.4 ENSMUSG00000037752 ENSMUST00000143642 Xkr8 protein_coding Interval_27906 chr11 70757120 70757348 + 0 NA Intergenic Intergenic -2083 ENSMUSG00000085502.1 ENSMUSG00000085502 ENSMUST00000127333 Gm12320 lincRNA Interval_164341 chr9 35494978 35496117 + 0 NA intron (ENSMUSG00000038119.15, intron 18 of 19) protein_coding-intron (ENSMUSG00000038119.15, intron 17 of 18) 8148 ENSMUSG00000088605.1 ENSMUSG00000088605 ENSMUST00000157980 Gm24188 rRNA Interval_69745 chr16 95990141 95991122 + 0 NA promoter-TSS (ENSMUSG00000022913.16) protein_coding-promoter-TSS (ENSMUSG00000022913.16) 259 ENSMUSG00000022913.16 ENSMUSG00000022913 ENSMUST00000233134 Psmg1 protein_coding Interval_98297 chr2 150862049 150862654 + 0 NA intron (ENSMUSG00000032046.15, intron 1 of 12) protein_coding-intron (ENSMUSG00000032046.15, intron 1 of 12) -19781 ENSMUSG00000032046.15 ENSMUSG00000032046 ENSMUST00000129228 Abhd12 protein_coding Interval_105 GL456233.1 38909 39463 + 0 NA NA NA NA NA Interval_149887 chr7 102249358 102251105 + 0 NA promoter-TSS (ENSMUSG00000073982.11) protein_coding-promoter-TSS (ENSMUSG00000073982.11) 5823 ENSMUSG00000073982.11 ENSMUSG00000073982 ENSMUST00000209968 Rhog protein_coding Interval_163580 chr9 22335956 22336621 + 0 NA intron (ENSMUSG00000036777.8, intron 3 of 3) protein_coding-intron (ENSMUSG00000036777.8, intron 22 of 23) -5788 ENSMUSG00000110759.1 ENSMUSG00000110759 ENSMUST00000215035 Gm6607 processed_pseudogene Interval_30376 chr11 93972809 93973801 + 0 NA Intergenic Intergenic -4784 ENSMUSG00000037601.11 ENSMUSG00000037601 ENSMUST00000107844 Nme1 protein_coding Interval_35207 chr12 18205486 18206180 + 0 NA Intergenic Intergenic -10709 ENSMUSG00000073198.5 ENSMUSG00000073198 ENSMUST00000101577 Bnip3l-ps transcribed_processed_pseudogene Interval_56810 chr14 122225488 122225803 + 0 NA intron (ENSMUSG00000025545.10, intron 1 of 7) protein_coding-intron (ENSMUSG00000025545.10, intron 1 of 7) 8009 ENSMUSG00000100585.1 ENSMUSG00000100585 ENSMUST00000187423 1700108J01Rik antisense Interval_34540 chr12 4972805 4973535 + 0 NA intron (ENSMUSG00000052812.5, intron 1 of 7) protein_coding-intron (ENSMUSG00000052812.5, intron 15 of 30) -8882 ENSMUSG00000052812.5 ENSMUSG00000052812 ENSMUST00000220408 Atad2b protein_coding Interval_8653 chr1 146322492 146323719 + 0 NA Intergenic Intergenic -97331 ENSMUSG00000090323.2 ENSMUSG00000090323 ENSMUST00000163646 Gm5263 processed_pseudogene Interval_118344 chr4 130782102 130782903 + 0 NA TTS (ENSMUSG00000028580.15) protein_coding-TTS (ENSMUSG00000028580.15) -3567 ENSMUSG00000086548.1 ENSMUSG00000086548 ENSMUST00000152986 Gm12972 lincRNA Interval_113822 chr4 59117610 59118513 + 0 NA intron (ENSMUSG00000038598.9, intron 1 of 27) protein_coding-intron (ENSMUSG00000038598.9, intron 1 of 27) -6948 ENSMUSG00000038598.9 ENSMUSG00000038598 ENSMUST00000122832 Shoc1 protein_coding Interval_156817 chr8 60835694 60835909 + 0 NA Intergenic Intergenic -10511 ENSMUSG00000110261.1 ENSMUSG00000110261 ENSMUST00000211229 Gm45485 processed_pseudogene Interval_121344 chr4 155123855 155124730 + 0 NA intron (ENSMUSG00000029049.14, intron 10 of 12) protein_coding-intron (ENSMUSG00000029049.14, intron 10 of 13) 37703 ENSMUSG00000029049.14 ENSMUSG00000029049 ENSMUST00000129415 Morn1 protein_coding Interval_53744 chr14 61359889 61360937 + 0 NA promoter-TSS (ENSMUSG00000021928.9) protein_coding-promoter-TSS (ENSMUSG00000021928.9) -5 ENSMUSG00000021928.9 ENSMUSG00000021928 ENSMUST00000225112 Ebpl protein_coding Interval_59249 chr15 49763625 49764159 + 0 NA Intergenic Intergenic -149490 ENSMUSG00000115446.1 ENSMUSG00000115446 ENSMUST00000227486 Gm49186 processed_pseudogene Interval_98358 chr2 151751379 151751916 + 0 NA Intergenic Intergenic -1669 ENSMUSG00000086800.1 ENSMUSG00000086800 ENSMUST00000134422 4930556L07Rik lincRNA Interval_43549 chr13 33030353 33030776 + 0 NA TTS (ENSMUSG00000113726.1) antisense-TTS (ENSMUSG00000113726.1) 3013 ENSMUSG00000021403.3 ENSMUSG00000021403 ENSMUST00000220566 Serpinb9b protein_coding Interval_101150 chr2 178530921 178531719 + 0 NA Intergenic Intergenic 70690 ENSMUSG00000039155.15 ENSMUSG00000039155 ENSMUST00000176869 Cdh26 protein_coding Interval_121251 chr4 154408864 154410528 + 0 NA intron (ENSMUSG00000039410.16, intron 3 of 15) protein_coding-intron (ENSMUSG00000039410.16, intron 3 of 16) 73569 ENSMUSG00000097871.1 ENSMUSG00000097871 ENSMUST00000181143 B230104I21Rik lincRNA Interval_108728 chr3 130758760 130759213 + 0 NA promoter-TSS (ENSMUSG00000105716.1) lincRNA-promoter-TSS (ENSMUSG00000105716.1) -279 ENSMUSG00000105716.1 ENSMUSG00000105716 ENSMUST00000196697 Gm43522 lincRNA Interval_156275 chr8 46827348 46827640 + 0 NA intron (ENSMUSG00000031627.9, intron 5 of 5) protein_coding-intron (ENSMUSG00000031627.9, intron 6 of 8) 6418 ENSMUSG00000110414.1 ENSMUSG00000110414 ENSMUST00000209717 Gm45481 TEC Interval_117313 chr4 122921365 122922491 + 0 NA Intergenic Intergenic -3905 ENSMUSG00000080929.1 ENSMUSG00000080929 ENSMUST00000119358 Gm12891 processed_pseudogene Interval_5967 chr1 93594168 93594684 + 0 NA intron (ENSMUSG00000034066.13, intron 13 of 26) protein_coding-intron (ENSMUSG00000034066.13, intron 13 of 26) -40767 ENSMUSG00000100927.1 ENSMUSG00000100927 ENSMUST00000190971 Gm28536 antisense Interval_105097 chr3 81167523 81168298 + 0 NA intron (ENSMUSG00000028019.9, intron 3 of 5) protein_coding-intron (ENSMUSG00000028019.9, intron 2 of 5) -127473 ENSMUSG00000085106.1 ENSMUSG00000085106 ENSMUST00000146657 Gm16000 antisense Interval_167791 chr9 72726652 72727007 + 0 NA intron (ENSMUSG00000032216.15, intron 6 of 20) protein_coding-intron (ENSMUSG00000032216.15, intron 14 of 28) -1311 ENSMUSG00000102411.1 ENSMUSG00000102411 ENSMUST00000194508 Gm36936 TEC Interval_7514 chr1 131936728 131938174 + 0 NA Intergenic Intergenic -4481 ENSMUSG00000103975.1 ENSMUSG00000103975 ENSMUST00000195496 Gm37676 TEC Interval_97562 chr2 139903985 139904203 + 0 NA intron (ENSMUSG00000039033.11, intron 10 of 12) protein_coding-intron (ENSMUSG00000039033.11, intron 11 of 13) 40797 ENSMUSG00000084207.1 ENSMUSG00000084207 ENSMUST00000120773 Gm14070 processed_pseudogene Interval_108292 chr3 123368942 123369594 + 0 NA TTS (ENSMUSG00000028114.16) protein_coding-TTS (ENSMUSG00000028114.16) 16830 ENSMUSG00000028114.16 ENSMUSG00000028114 ENSMUST00000197628 Mettl14 protein_coding Interval_162174 chr8 125692548 125693750 + 0 NA Intergenic Intergenic 23331 ENSMUSG00000050930.5 ENSMUSG00000050930 ENSMUST00000053078 Map10 protein_coding Interval_169046 chr9 91081420 91081849 + 0 NA Intergenic Intergenic -15515 ENSMUSG00000056904.3 ENSMUSG00000056904 ENSMUST00000077991 Gm5620 processed_pseudogene Interval_18091 chr10 82272745 82273003 + 0 NA Intergenic Intergenic -6000 ENSMUSG00000111930.1 ENSMUSG00000111930 ENSMUST00000219873 Gm47382 processed_pseudogene Interval_78528 chr18 14467175 14467701 + 0 NA Intergenic Intergenic -24567 ENSMUSG00000117607.1 ENSMUSG00000117607 ENSMUST00000234589 Gm50098 processed_pseudogene Interval_2476 chr1 39641809 39642203 + 0 NA intron (ENSMUSG00000050967.5, intron 2 of 3) protein_coding-intron (ENSMUSG00000050967.5, intron 2 of 3) -8170 ENSMUSG00000097083.1 ENSMUSG00000097083 ENSMUST00000181841 D930019O06Rik antisense Interval_85069 chr19 22104726 22104950 + 0 NA Intergenic Intergenic 107507 ENSMUSG00000118226.1 ENSMUSG00000118226 ENSMUST00000237916 Gm50134 lincRNA Interval_73652 chr17 42462884 42463376 + 0 NA intron (ENSMUSG00000042256.5, intron 2 of 2) protein_coding-intron (ENSMUSG00000042256.5, intron 3 of 3) 147141 ENSMUSG00000042256.5 ENSMUSG00000042256 ENSMUST00000232968 Ptchd4 protein_coding Interval_17116 chr10 71420632 71423280 + 0 NA intron (ENSMUSG00000060733.13, intron 1 of 1) protein_coding-intron (ENSMUSG00000060733.13, intron 2 of 2) -61125 ENSMUSG00000112608.1 ENSMUSG00000112608 ENSMUST00000217831 Gm46233 processed_pseudogene Interval_160564 chr8 110737325 110739495 + 0 NA TTS (ENSMUSG00000033763.14) protein_coding-TTS (ENSMUSG00000033763.14) 4288 ENSMUSG00000031750.15 ENSMUSG00000031750 ENSMUST00000137362 Il34 protein_coding Interval_76031 chr17 74480092 74481187 + 0 NA Intergenic Intergenic -11205 ENSMUSG00000024072.9 ENSMUSG00000024072 ENSMUST00000234853 Yipf4 protein_coding Interval_86089 chr19 36496040 36496287 + 0 NA Intergenic Intergenic -45006 ENSMUSG00000114235.1 ENSMUSG00000114235 ENSMUST00000224716 F530104D19Rik antisense Interval_159677 chr8 96735072 96735756 + 0 NA Intergenic Intergenic 79285 ENSMUSG00000077938.1 ENSMUSG00000077938 ENSMUST00000104745 Gm24132 miRNA Interval_5023 chr1 84331897 84333631 + 0 NA intron (ENSMUSG00000045658.16, intron 2 of 4) protein_coding-intron (ENSMUSG00000045658.16, intron 1 of 2) -48141 ENSMUSG00000045658.16 ENSMUSG00000045658 ENSMUST00000187992 Pid1 protein_coding Interval_78 GL456216.1 34657 35665 + 0 NA NA NA NA NA Interval_24532 chr11 34098219 34099093 + 0 NA promoter-TSS (ENSMUSG00000085684.2) protein_coding-promoter-TSS (ENSMUSG00000085684.2) -1811 ENSMUSG00000085684.2 ENSMUSG00000085684 ENSMUST00000224226 4930469K13Rik protein_coding Interval_22168 chr11 6763355 6763589 + 0 NA Intergenic Intergenic 19666 ENSMUSG00000083819.1 ENSMUSG00000083819 ENSMUST00000118511 Gm11977 processed_pseudogene Interval_170677 chr9 110044185 110044456 + 0 NA intron (ENSMUSG00000032479.15, intron 2 of 8) protein_coding-intron (ENSMUSG00000032479.15, intron 8 of 18) 3140 ENSMUSG00000105962.1 ENSMUSG00000105962 ENSMUST00000197902 Gm42432 TEC Interval_147658 chr7 70788669 70790001 + 0 NA Intergenic Intergenic 36919 ENSMUSG00000089401.1 ENSMUSG00000089401 ENSMUST00000158776 Gm24880 rRNA Interval_8594 chr1 143643927 143644660 + 0 NA intron (ENSMUSG00000033849.3, intron 1 of 1) protein_coding-intron (ENSMUSG00000026361.9, intron 10 of 16) 3629 ENSMUSG00000033849.3 ENSMUSG00000033849 ENSMUST00000038252 B3galt2 protein_coding Interval_8147 chr1 136061663 136062034 + 0 NA intron (ENSMUSG00000026407.17, intron 2 of 43) protein_coding-intron (ENSMUSG00000026407.17, intron 2 of 43) 4667 ENSMUSG00000102838.1 ENSMUSG00000102838 ENSMUST00000194723 Gm37014 TEC Interval_47147 chr13 76304498 76304894 + 0 NA exon (ENSMUSG00000109228.2, exon 1 of 11) protein_coding-exon (ENSMUSG00000109228.2, exon 1 of 11) 16583 ENSMUSG00000092732.1 ENSMUSG00000092732 ENSMUST00000174991 Gm24025 miRNA Interval_162443 chr8 128771350 128771554 + 0 NA TTS (ENSMUSG00000087870.1) snoRNA-TTS (ENSMUSG00000087870.1) 282 ENSMUSG00000087870.1 ENSMUSG00000087870 ENSMUST00000157245 Gm26100 snoRNA Interval_18122 chr10 82811643 82812861 + 0 NA exon (ENSMUSG00000056821.13, exon 2 of 5) lincRNA-exon (ENSMUSG00000056821.13, exon 2 of 5) 129 ENSMUSG00000056821.13 ENSMUSG00000056821 ENSMUST00000076984 1700028I16Rik lincRNA Interval_8660 chr1 146485461 146485756 + 0 NA intron (ENSMUSG00000099964.6, intron 1 of 6) antisense-intron (ENSMUSG00000099964.6, intron 1 of 3) -3253 ENSMUSG00000102403.1 ENSMUSG00000102403 ENSMUST00000195609 Gm38187 TEC Interval_99804 chr2 165001529 165002285 + 0 NA TTS (ENSMUSG00000039804.15) protein_coding-TTS (ENSMUSG00000039804.15) 32922 ENSMUSG00000039804.15 ENSMUSG00000039804 ENSMUST00000141663 Ncoa5 protein_coding Interval_146100 chr7 43894608 43895226 + 0 NA Intergenic Intergenic 13757 ENSMUSG00000006948.7 ENSMUSG00000006948 ENSMUST00000007161 Klk4 protein_coding Interval_94524 chr2 91927985 91928262 + 0 NA exon (ENSMUSG00000040495.4, exon 1 of 1) protein_coding-exon (ENSMUSG00000040495.4, exon 1 of 1) 874 ENSMUSG00000040495.4 ENSMUSG00000040495 ENSMUST00000045537 Chrm4 protein_coding Interval_171467 chr9 118549479 118549716 + 0 NA TTS (ENSMUSG00000038708.10) protein_coding-TTS (ENSMUSG00000038708.10) 1189 ENSMUSG00000038708.10 ENSMUSG00000038708 ENSMUST00000211826 Golga4 protein_coding Interval_132690 chr5 147179299 147179598 + 0 NA Intergenic Intergenic -9248 ENSMUSG00000053129.5 ENSMUSG00000053129 ENSMUST00000065382 Gsx1 protein_coding Interval_95096 chr2 103838648 103840171 + 0 NA TTS (ENSMUSG00000076234.1) miRNA-TTS (ENSMUSG00000076234.1) 300 ENSMUSG00000076234.1 ENSMUSG00000076234 ENSMUST00000102279 Gm22757 miRNA Interval_18124 chr10 82823677 82824065 + 0 NA exon (ENSMUSG00000056821.13, exon 5 of 5) lincRNA-exon (ENSMUSG00000056821.13, exon 5 of 5) 11748 ENSMUSG00000056821.13 ENSMUSG00000056821 ENSMUST00000076984 1700028I16Rik lincRNA Interval_56904 chr14 123046404 123047178 + 0 NA intron (ENSMUSG00000115016.1, intron 1 of 3) processed_transcript-intron (ENSMUSG00000115016.1, intron 1 of 3) 3509 ENSMUSG00000115016.1 ENSMUSG00000115016 ENSMUST00000226524 AA536875 processed_transcript Interval_92418 chr2 59629596 59630414 + 0 NA promoter-TSS (ENSMUSG00000035168.16) protein_coding-promoter-TSS (ENSMUSG00000035168.16) -65321 ENSMUSG00000081157.1 ENSMUSG00000081157 ENSMUST00000118837 Gm13552 processed_pseudogene Interval_64076 chr16 7302131 7302833 + 0 NA intron (ENSMUSG00000008658.16, intron 5 of 10) protein_coding-intron (ENSMUSG00000008658.16, intron 8 of 14) 108735 ENSMUSG00000008658.16 ENSMUSG00000008658 ENSMUST00000231031 Rbfox1 protein_coding Interval_104148 chr3 59080415 59081569 + 0 NA intron (ENSMUSG00000056476.13, intron 10 of 43) protein_coding-intron (ENSMUSG00000056476.13, intron 11 of 14) 20829 ENSMUSG00000050075.8 ENSMUSG00000050075 ENSMUST00000085040 Gpr171 protein_coding Interval_71436 chr17 23742384 23743214 + 0 NA promoter-TSS (ENSMUSG00000097006.7) antisense-promoter-TSS (ENSMUSG00000097006.7) -1932 ENSMUSG00000023909.4 ENSMUSG00000023909 ENSMUST00000233776 Paqr4 protein_coding Interval_28019 chr11 72265458 72267632 + 0 NA promoter-TSS (ENSMUSG00000020805.14) protein_coding-promoter-TSS (ENSMUSG00000020805.14) 48 ENSMUSG00000020805.14 ENSMUSG00000020805 ENSMUST00000207990 Slc13a5 protein_coding Interval_94776 chr2 94242933 94243659 + 0 NA promoter-TSS (ENSMUSG00000075020.6) lincRNA-promoter-TSS (ENSMUSG00000075020.6) -1843 ENSMUSG00000065511.1 ENSMUSG00000065511 ENSMUST00000083577 Mir129-2 miRNA Interval_174663 chrX 162719843 162720217 + 0 NA Intergenic Intergenic 16583 ENSMUSG00000086034.1 ENSMUSG00000086034 ENSMUST00000136472 Gm15201 processed_transcript Interval_117087 chr4 119453243 119453660 + 0 NA intron (ENSMUSG00000070806.5, intron 2 of 2) protein_coding-intron (ENSMUSG00000070806.5, intron 7 of 7) 30579 ENSMUSG00000070806.5 ENSMUSG00000070806 ENSMUST00000129150 Zmynd12 protein_coding Interval_55236 chr14 79553664 79554498 + 0 NA intron (ENSMUSG00000036461.16, intron 2 of 7) protein_coding-intron (ENSMUSG00000036461.16, intron 2 of 8) 8211 ENSMUSG00000093684.2 ENSMUSG00000093684 ENSMUST00000176930 Gm27857 miRNA Interval_61939 chr15 85362609 85363126 + 0 NA intron (ENSMUSG00000016541.10, intron 2 of 11) protein_coding-intron (ENSMUSG00000016541.10, intron 2 of 11) -11613 ENSMUSG00000064764.1 ENSMUSG00000064764 ENSMUST00000082830 Gm23517 snRNA Interval_57578 chr15 12507485 12508240 + 0 NA intron (ENSMUSG00000022197.16, intron 3 of 4) protein_coding-intron (ENSMUSG00000022197.16, intron 1 of 23) 64668 ENSMUSG00000095516.1 ENSMUSG00000095516 ENSMUST00000179085 Gm24135 miRNA Interval_109824 chr3 148353214 148353623 + 0 NA TTS (ENSMUSG00000077441.1) snoRNA-TTS (ENSMUSG00000077441.1) 800 ENSMUSG00000077441.1 ENSMUSG00000077441 ENSMUST00000104253 Gm23131 snoRNA Interval_129875 chr5 122865684 122866617 + 0 NA intron (ENSMUSG00000029474.7, intron 3 of 5) protein_coding-intron (ENSMUSG00000029474.7, intron 3 of 5) 15993 ENSMUSG00000029474.7 ENSMUSG00000029474 ENSMUST00000198602 Rnf34 protein_coding Interval_68569 chr16 78884796 78885125 + 0 NA Intergenic Intergenic -46317 ENSMUSG00000022860.15 ENSMUSG00000022860 ENSMUST00000231883 Chodl protein_coding Interval_90509 chr2 30864617 30865748 + 0 NA intron (ENSMUSG00000039476.13, intron 1 of 1) protein_coding-intron (ENSMUSG00000039476.13, intron 1 of 3) 19738 ENSMUSG00000039476.13 ENSMUSG00000039476 ENSMUST00000137924 Prrx2 protein_coding Interval_128153 chr5 111356156 111356475 + 0 NA intron (ENSMUSG00000050017.11, intron 7 of 10) protein_coding-intron (ENSMUSG00000050017.11, intron 7 of 11) 25508 ENSMUSG00000050017.11 ENSMUSG00000050017 ENSMUST00000198137 Pitpnb protein_coding Interval_20520 chr10 118373062 118373446 + 0 NA Intergenic Intergenic -19149 ENSMUSG00000112919.1 ENSMUSG00000112919 ENSMUST00000178998 Gm9049 protein_coding Interval_76575 chr17 81421634 81422612 + 0 NA intron (ENSMUSG00000054640.15, intron 9 of 11) protein_coding-intron (ENSMUSG00000054640.15, intron 8 of 9) -19640 ENSMUSG00000079333.3 ENSMUSG00000079333 ENSMUST00000168858 Gm11096 protein_coding Interval_148673 chr7 84014693 84015985 + 0 NA intron (ENSMUSG00000052353.13, intron 1 of 23) protein_coding-intron (ENSMUSG00000052353.13, intron 1 of 28) 71163 ENSMUSG00000052353.13 ENSMUSG00000052353 ENSMUST00000147578 Cemip protein_coding Interval_19448 chr10 99405225 99406049 + 0 NA intron (ENSMUSG00000044633.4, intron 2 of 2) lincRNA-intron (ENSMUSG00000044633.4, intron 2 of 2) -38407 ENSMUSG00000090665.2 ENSMUSG00000090665 ENSMUST00000167243 Gad1-ps processed_pseudogene Interval_8176 chr1 136247553 136247742 + 0 NA promoter-TSS (ENSMUSG00000103594.1) lincRNA-promoter-TSS (ENSMUSG00000103594.1) -15 ENSMUSG00000103594.1 ENSMUSG00000103594 ENSMUST00000194339 A430034D21Rik lincRNA Interval_30618 chr11 95507215 95507926 + 0 NA Intergenic Intergenic 7000 ENSMUSG00000046719.7 ENSMUSG00000046719 ENSMUST00000058866 Nxph3 protein_coding Interval_84579 chr19 12981170 12981345 + 0 NA Intergenic Intergenic -13757 ENSMUSG00000046913.3 ENSMUSG00000046913 ENSMUST00000063144 Olfr1451 protein_coding Interval_145377 chr7 34324167 34324361 + 0 NA Intergenic Intergenic -10742 ENSMUSG00000066571.13 ENSMUSG00000066571 ENSMUST00000205618 4931406P16Rik protein_coding Interval_155419 chr8 33465760 33466710 + 0 NA Intergenic Intergenic -17961 ENSMUSG00000109750.1 ENSMUSG00000109750 ENSMUST00000210634 Hmgb1-rs17 unprocessed_pseudogene Interval_70043 chr17 4956742 4957032 + 0 NA Intergenic Intergenic -10073 ENSMUSG00000116551.1 ENSMUSG00000116551 ENSMUST00000232522 Gm41517 lincRNA Interval_86921 chr19 44893397 44893581 + 0 NA Intergenic Intergenic 42480 ENSMUSG00000117967.1 ENSMUSG00000117967 ENSMUST00000236477 Gm5246 processed_pseudogene Interval_161855 chr8 123224203 123225443 + 0 NA promoter-TSS (ENSMUSG00000033862.7) protein_coding-promoter-TSS (ENSMUSG00000033862.7) -43 ENSMUSG00000033862.7 ENSMUSG00000033862 ENSMUST00000212532 Cdk10 protein_coding Interval_160417 chr8 109314720 109315140 + 0 NA Intergenic Intergenic 25934 ENSMUSG00000110528.1 ENSMUSG00000110528 ENSMUST00000211890 Gm1943 processed_pseudogene Interval_84262 chr19 9081495 9083022 + 0 NA Intergenic Intergenic 5700 ENSMUSG00000024653.2 ENSMUSG00000024653 ENSMUST00000025554 Scgb1a1 protein_coding Interval_157954 chr8 77249959 77250812 + 0 NA TTS (ENSMUSG00000037148.8) protein_coding-TTS (ENSMUSG00000037148.8) -32476 ENSMUSG00000110258.1 ENSMUSG00000110258 ENSMUST00000210161 Gm45406 antisense Interval_52760 chr14 49446603 49448441 + 0 NA intron (ENSMUSG00000021852.14, intron 1 of 2) protein_coding-intron (ENSMUSG00000021852.14, intron 1 of 7) 72647 ENSMUSG00000089416.1 ENSMUSG00000089416 ENSMUST00000158791 Gm22116 snRNA Interval_38638 chr12 80734669 80735024 + 0 NA Intergenic Intergenic 13114 ENSMUSG00000066438.6 ENSMUSG00000066438 ENSMUST00000153762 Plekhd1 protein_coding Interval_42644 chr13 17685581 17685847 + 0 NA intron (ENSMUSG00000055137.7, intron 1 of 1) protein_coding-intron (ENSMUSG00000055137.7, intron 1 of 13) 9023 ENSMUSG00000055137.7 ENSMUSG00000055137 ENSMUST00000221467 Sugct protein_coding Interval_111991 chr4 33066718 33066961 + 0 NA intron (ENSMUSG00000023267.10, intron 1 of 8) protein_coding-intron (ENSMUSG00000023267.10, intron 1 of 8) -12555 ENSMUSG00000082851.1 ENSMUSG00000082851 ENSMUST00000121630 Gm11931 processed_pseudogene Interval_48286 chr13 97749355 97749586 + 0 NA Intergenic Intergenic -1642 ENSMUSG00000097346.1 ENSMUSG00000097346 ENSMUST00000180396 Rps18-ps4 lincRNA Interval_149025 chr7 92287427 92287672 + 0 NA exon (ENSMUSG00000052572.19, exon 2 of 2) protein_coding-exon (ENSMUSG00000052572.19, exon 2 of 2) -120635 ENSMUSG00000109574.1 ENSMUSG00000109574 ENSMUST00000207479 B230206I08Rik TEC Interval_106335 chr3 95433820 95435019 + 0 NA promoter-TSS (ENSMUSG00000015522.18) protein_coding-promoter-TSS (ENSMUSG00000015522.18) 5856 ENSMUSG00000097532.2 ENSMUSG00000097532 ENSMUST00000238767 Gm4349 transcribed_unprocessed_pseudogene Interval_102282 chr3 20508888 20509448 + 0 NA Intergenic Intergenic -2960 ENSMUSG00000102636.1 ENSMUSG00000102636 ENSMUST00000195457 Gm31466 lincRNA Interval_97661 chr2 142362786 142363312 + 0 NA intron (ENSMUSG00000068205.14, intron 11 of 13) protein_coding-intron (ENSMUSG00000068205.14, intron 16 of 17) -18939 ENSMUSG00000089318.1 ENSMUSG00000089318 ENSMUST00000158693 Gm23179 misc_RNA Interval_76282 chr17 78708165 78708824 + 0 NA intron (ENSMUSG00000024077.15, intron 1 of 17) protein_coding-intron (ENSMUSG00000024077.15, intron 1 of 17) 28702 ENSMUSG00000024077.15 ENSMUSG00000024077 ENSMUST00000145480 Strn protein_coding Interval_64181 chr16 8881182 8881841 + 0 NA Intergenic Intergenic -8340 ENSMUSG00000087982.1 ENSMUSG00000087982 ENSMUST00000157357 Gm22224 rRNA Interval_155619 chr8 35221944 35223469 + 0 NA promoter-TSS (ENSMUSG00000109607.1) lincRNA-promoter-TSS (ENSMUSG00000109607.1) -252 ENSMUSG00000109607.1 ENSMUSG00000109607 ENSMUST00000209249 Gm34533 lincRNA Interval_70967 chr17 16910325 16911118 + 0 NA Intergenic Intergenic 21366 ENSMUSG00000116621.1 ENSMUSG00000116621 ENSMUST00000232084 Gm7483 unprocessed_pseudogene Interval_153335 chr7 143706564 143707389 + 0 NA intron (ENSMUSG00000037606.18, intron 7 of 21) protein_coding-intron (ENSMUSG00000037606.18, intron 7 of 21) -21104 ENSMUSG00000037613.16 ENSMUSG00000037613 ENSMUST00000208613 Tnfrsf23 protein_coding Interval_146306 chr7 45238732 45239380 + 0 NA promoter-TSS (ENSMUSG00000030798.15) protein_coding-promoter-TSS (ENSMUSG00000030798.15) -182 ENSMUSG00000030798.15 ENSMUSG00000030798 ENSMUST00000210372 Cd37 protein_coding Interval_141519 chr6 128842787 128843965 + 0 NA promoter-TSS (ENSMUSG00000107946.1) lincRNA-promoter-TSS (ENSMUSG00000107946.1) -205 ENSMUSG00000107946.1 ENSMUSG00000107946 ENSMUST00000203263 Gm44066 lincRNA Interval_46446 chr13 65310334 65312131 + 0 NA Intergenic Intergenic -2526 ENSMUSG00000114194.1 ENSMUSG00000114194 ENSMUST00000221086 Gm3800 processed_pseudogene Interval_139136 chr6 95765887 95766808 + 0 NA Intergenic Intergenic -108879 ENSMUSG00000061838.7 ENSMUSG00000061838 ENSMUST00000203109 Suclg2 protein_coding Interval_84312 chr19 10012687 10014044 + 0 NA intron (ENSMUSG00000024663.20, intron 1 of 12) protein_coding-intron (ENSMUSG00000024663.20, intron 1 of 12) -4828 ENSMUSG00000024663.20 ENSMUSG00000024663 ENSMUST00000129882 Rab3il1 protein_coding Interval_115020 chr4 88549995 88550878 + 0 NA Intergenic Intergenic 7809 ENSMUSG00000096011.1 ENSMUSG00000096011 ENSMUST00000102809 Ifna15 protein_coding Interval_170782 chr9 110726642 110727595 + 0 NA TTS (ENSMUSG00000032492.14) protein_coding-TTS (ENSMUSG00000032492.14) -14743 ENSMUSG00000059741.13 ENSMUSG00000059741 ENSMUST00000153142 Myl3 protein_coding Interval_119765 chr4 139805299 139805674 + 0 NA intron (ENSMUSG00000028736.13, intron 4 of 8) protein_coding-intron (ENSMUSG00000028736.13, intron 4 of 8) 27521 ENSMUSG00000028736.13 ENSMUSG00000028736 ENSMUST00000174681 Pax7 protein_coding Interval_121383 chr4 155387961 155388190 + 0 NA TTS (ENSMUSG00000029054.8) protein_coding-TTS (ENSMUSG00000029054.8) 9972 ENSMUSG00000029054.8 ENSMUSG00000029054 ENSMUST00000129892 Gabrd protein_coding Interval_23682 chr11 24514520 24514764 + 0 NA intron (ENSMUSG00000086892.1, intron 1 of 3) lincRNA-intron (ENSMUSG00000086892.1, intron 1 of 3) 32733 ENSMUSG00000086892.1 ENSMUSG00000086892 ENSMUST00000152726 4933430M04Rik lincRNA Interval_74402 chr17 49946849 49947524 + 0 NA Intergenic Intergenic 19547 ENSMUSG00000118549.1 ENSMUSG00000118549 ENSMUST00000239022 AC114824.1 unprocessed_pseudogene Interval_78632 chr18 15943968 15944657 + 0 NA Intergenic Intergenic -44056 ENSMUSG00000043223.7 ENSMUSG00000043223 ENSMUST00000155839 Gm4835 processed_pseudogene Interval_62358 chr15 91017772 91019264 + 0 NA intron (ENSMUSG00000022629.17, intron 1 of 32) protein_coding-intron (ENSMUSG00000022629.17, intron 1 of 35) -55644 ENSMUSG00000115952.1 ENSMUSG00000115952 ENSMUST00000230093 Gm18814 processed_pseudogene Interval_8493 chr1 140153732 140154122 + 0 NA intron (ENSMUSG00000026365.15, intron 5 of 12) protein_coding-intron (ENSMUSG00000026365.15, intron 5 of 21) 29837 ENSMUSG00000026365.15 ENSMUSG00000026365 ENSMUST00000194688 Cfh protein_coding Interval_166480 chr9 59949157 59949421 + 0 NA promoter-TSS (ENSMUSG00000032292.8) protein_coding-promoter-TSS (ENSMUSG00000032292.8) 821 ENSMUSG00000032292.8 ENSMUSG00000032292 ENSMUST00000138888 Nr2e3 protein_coding Interval_66891 chr16 38370309 38370807 + 0 NA intron (ENSMUSG00000022803.12, intron 2 of 2) protein_coding-intron (ENSMUSG00000022803.12, intron 2 of 3) -1440 ENSMUSG00000022803.12 ENSMUSG00000022803 ENSMUST00000146342 Popdc2 protein_coding Interval_101691 chr3 8971496 8971920 + 0 NA intron (ENSMUSG00000027506.15, intron 1 of 3) protein_coding-intron (ENSMUSG00000027506.15, intron 1 of 6) 32770 ENSMUSG00000027506.15 ENSMUSG00000027506 ENSMUST00000155450 Tpd52 protein_coding Interval_14664 chr10 38382031 38383820 + 0 NA Intergenic Intergenic 51210 ENSMUSG00000110782.1 ENSMUSG00000110782 ENSMUST00000214608 Gm48198 processed_pseudogene Interval_54944 chr14 76396617 76397961 + 0 NA Intergenic Intergenic -21539 ENSMUSG00000022010.19 ENSMUSG00000022010 ENSMUST00000133224 Tsc22d1 protein_coding Interval_74420 chr17 50159765 50161042 + 0 NA intron (ENSMUSG00000039316.14, intron 2 of 6) protein_coding-intron (ENSMUSG00000039316.14, intron 2 of 9) 30094 ENSMUSG00000039316.14 ENSMUSG00000039316 ENSMUST00000156094 Rftn1 protein_coding Interval_161496 chr8 120731704 120732414 + 0 NA intron (ENSMUSG00000092329.1, intron 1 of 15) protein_coding-intron (ENSMUSG00000092329.1, intron 1 of 15) -4300 ENSMUSG00000041515.10 ENSMUSG00000041515 ENSMUST00000160594 Irf8 protein_coding Interval_163126 chr9 15472054 15473345 + 0 NA Intergenic Intergenic -20733 ENSMUSG00000058173.12 ENSMUSG00000058173 ENSMUST00000178999 Smco4 protein_coding Interval_144166 chr7 19760117 19760799 + 0 NA TTS (ENSMUSG00000109136.1) TEC-TTS (ENSMUSG00000109136.1) 1796 ENSMUSG00000109136.1 ENSMUSG00000109136 ENSMUST00000208280 Gm45114 TEC Interval_92479 chr2 60034533 60035294 + 0 NA intron (ENSMUSG00000026987.16, intron 1 of 34) protein_coding-intron (ENSMUSG00000026987.16, intron 1 of 34) -2228 ENSMUSG00000085975.1 ENSMUSG00000085975 ENSMUST00000153675 Gm13572 lincRNA Interval_83915 chr19 5553501 5555149 + 0 NA intron (ENSMUSG00000024922.2, intron 1 of 3) protein_coding-intron (ENSMUSG00000024922.2, intron 1 of 3) 5078 ENSMUSG00000024922.2 ENSMUSG00000024922 ENSMUST00000238060 Ovol1 protein_coding Interval_4783 chr1 78613078 78613602 + 0 NA Intergenic Intergenic -2127 ENSMUSG00000100562.1 ENSMUSG00000100562 ENSMUST00000186132 Gm29611 lincRNA Interval_107284 chr3 105436495 105436698 + 0 NA Intergenic Intergenic 15131 ENSMUSG00000074346.6 ENSMUSG00000074346 ENSMUST00000130683 Kcnd3os antisense Interval_129781 chr5 122308084 122308341 + 0 NA exon (ENSMUSG00000038582.15, exon 2 of 6) protein_coding-exon (ENSMUSG00000038582.15, exon 2 of 6) 5790 ENSMUSG00000083909.1 ENSMUSG00000083909 ENSMUST00000120513 Gm15842 processed_pseudogene Interval_154728 chr8 22881514 22881769 + 0 NA intron (ENSMUSG00000031540.14, intron 2 of 17) protein_coding-intron (ENSMUSG00000031540.14, intron 3 of 17) 8052 ENSMUSG00000109652.1 ENSMUSG00000109652 ENSMUST00000210028 Gm45555 TEC Interval_25662 chr11 50529021 50529308 + 0 NA Intergenic Intergenic -17987 ENSMUSG00000089366.1 ENSMUSG00000089366 ENSMUST00000158741 Gm23824 misc_RNA Interval_30288 chr11 92930528 92930744 + 0 NA Intergenic Intergenic 20339 ENSMUSG00000087810.1 ENSMUSG00000087810 ENSMUST00000157185 Gm25113 snoRNA Interval_80193 chr18 38158551 38159884 + 0 NA Intergenic Intergenic 44623 ENSMUSG00000051375.15 ENSMUSG00000051375 ENSMUST00000193828 Pcdh1 protein_coding Interval_105137 chr3 82357650 82358593 + 0 NA promoter-TSS (ENSMUSG00000033900.13) protein_coding-promoter-TSS (ENSMUSG00000033900.13) -21952 ENSMUSG00000033900.13 ENSMUSG00000033900 ENSMUST00000195793 Map9 protein_coding Interval_166061 chr9 56167803 56168841 + 0 NA Intergenic Intergenic -2845 ENSMUSG00000032324.11 ENSMUSG00000032324 ENSMUST00000216320 Tspan3 protein_coding Interval_173553 chrX 99241850 99242099 + 0 NA Intergenic Intergenic 103843 ENSMUSG00000031217.8 ENSMUSG00000031217 ENSMUST00000151750 Efnb1 protein_coding Interval_155777 chr8 37465482 37466246 + 0 NA Intergenic Intergenic -64844 ENSMUSG00000109820.1 ENSMUSG00000109820 ENSMUST00000210980 Gm45654 processed_pseudogene Interval_78759 chr18 20469058 20469445 + 0 NA intron (ENSMUSG00000001804.9, intron 15 of 15) protein_coding-intron (ENSMUSG00000001804.9, intron 15 of 15) -30064 ENSMUSG00000117480.1 ENSMUSG00000117480 ENSMUST00000234005 Gm5688 processed_pseudogene Interval_20531 chr10 118601052 118601824 + 0 NA Intergenic Intergenic -46086 ENSMUSG00000112230.2 ENSMUSG00000112230 ENSMUST00000220034 Ifngas1 lincRNA Interval_154113 chr8 12813338 12813588 + 0 NA exon (ENSMUSG00000031441.15, exon 2 of 2) protein_coding-exon (ENSMUSG00000031441.15, exon 2 of 2) 18456 ENSMUSG00000084780.7 ENSMUSG00000084780 ENSMUST00000135138 Gm15350 antisense Interval_12292 chr1 191438364 191439389 + 0 NA intron (ENSMUSG00000103114.1, intron 5 of 5) lincRNA-intron (ENSMUSG00000103114.1, intron 5 of 5) 26172 ENSMUSG00000103114.1 ENSMUSG00000103114 ENSMUST00000192778 Gm32200 lincRNA Interval_147394 chr7 66426730 66428369 + 0 NA promoter-TSS (ENSMUSG00000015134.15) protein_coding-promoter-TSS (ENSMUSG00000015134.15) -8314 ENSMUSG00000015134.15 ENSMUSG00000015134 ENSMUST00000174215 Aldh1a3 protein_coding Interval_173445 chrX 93889427 93890073 + 0 NA Intergenic Intergenic 32212 ENSMUSG00000082728.1 ENSMUSG00000082728 ENSMUST00000117999 Supt20-ps processed_pseudogene Interval_14110 chr10 27603961 27604415 + 0 NA intron (ENSMUSG00000019899.17, intron 1 of 1) protein_coding-intron (ENSMUSG00000019899.17, intron 1 of 64) 11140 ENSMUSG00000103931.1 ENSMUSG00000103931 ENSMUST00000192114 Gm36962 TEC Interval_10339 chr1 169654530 169655744 + 0 NA promoter-TSS (ENSMUSG00000026678.10) protein_coding-promoter-TSS (ENSMUSG00000026678.10) -385 ENSMUSG00000026678.10 ENSMUSG00000026678 ENSMUST00000152809 Rgs5 protein_coding Interval_152209 chr7 130662880 130663450 + 0 NA intron (ENSMUSG00000030852.18, intron 2 of 3) protein_coding-intron (ENSMUSG00000030852.18, intron 3 of 20) -8773 ENSMUSG00000109225.1 ENSMUSG00000109225 ENSMUST00000207466 4930513N20Rik TEC Interval_170149 chr9 105583183 105583497 + 0 NA Intergenic Intergenic -22579 ENSMUSG00000101597.2 ENSMUSG00000101597 ENSMUST00000187303 Gm5621 processed_pseudogene Interval_144324 chr7 24481153 24482226 + 0 NA promoter-TSS (ENSMUSG00000054793.8) protein_coding-promoter-TSS (ENSMUSG00000054793.8) -18272 ENSMUSG00000054793.8 ENSMUSG00000054793 ENSMUST00000205820 Cadm4 protein_coding Interval_140 GL456387.1 270 2940 + 0 NA NA NA NA NA Interval_156781 chr8 59208606 59208860 + 0 NA Intergenic Intergenic -10584 ENSMUSG00000110401.1 ENSMUSG00000110401 ENSMUST00000211003 Gm5740 processed_pseudogene Interval_166118 chr9 56847483 56847974 + 0 NA TTS (ENSMUSG00000045620.7) protein_coding-TTS (ENSMUSG00000045620.7) 16951 ENSMUSG00000045620.7 ENSMUSG00000045620 ENSMUST00000215694 Odf3l1 protein_coding Interval_91240 chr2 36238468 36238694 + 0 NA TTS (ENSMUSG00000047250.13) protein_coding-TTS (ENSMUSG00000047250.13) -2132 ENSMUSG00000047250.13 ENSMUSG00000047250 ENSMUST00000133777 Ptgs1 protein_coding Interval_141733 chr6 134118806 134119574 + 0 NA intron (ENSMUSG00000030199.16, intron 2 of 8) protein_coding-intron (ENSMUSG00000030199.16, intron 1 of 7) 34589 ENSMUSG00000108238.1 ENSMUSG00000108238 ENSMUST00000204572 Gm43984 TEC Interval_134432 chr6 28609540 28610342 + 0 NA intron (ENSMUSG00000001424.14, intron 1 of 4) protein_coding-intron (ENSMUSG00000001424.14, intron 10 of 23) 41869 ENSMUSG00000103132.1 ENSMUSG00000103132 ENSMUST00000194736 Gm37978 TEC Interval_37725 chr12 71438944 71439591 + 0 NA intron (ENSMUSG00000113441.1, intron 5 of 5) lincRNA-intron (ENSMUSG00000113441.1, intron 5 of 5) -49018 ENSMUSG00000113630.1 ENSMUSG00000113630 ENSMUST00000220948 4930404H11Rik lincRNA Interval_124623 chr5 52515398 52516673 + 0 NA Intergenic Intergenic -22796 ENSMUSG00000104829.1 ENSMUSG00000104829 ENSMUST00000198876 Gm43685 antisense Interval_147936 chr7 75755108 75756472 + 0 NA Intergenic Intergenic 1578 ENSMUSG00000076961.1 ENSMUSG00000076961 ENSMUST00000103773 Gm23251 miRNA Interval_29180 chr11 81151757 81153971 + 0 NA exon (ENSMUSG00000020704.13, exon 1 of 10) protein_coding-exon (ENSMUSG00000020704.13, exon 1 of 10) 80461 ENSMUSG00000085130.1 ENSMUSG00000085130 ENSMUST00000150536 Gm11417 antisense Interval_27672 chr11 69401168 69401831 + 0 NA promoter-TSS (ENSMUSG00000085178.1) antisense-promoter-TSS (ENSMUSG00000085178.1) -14 ENSMUSG00000085178.1 ENSMUSG00000085178 ENSMUST00000129924 Kdm6bos antisense Interval_64135 chr16 8666463 8666720 + 0 NA intron (ENSMUSG00000008393.9, intron 1 of 3) protein_coding-intron (ENSMUSG00000008393.9, intron 1 of 3) 5564 ENSMUSG00000008393.9 ENSMUSG00000008393 ENSMUST00000008537 Carhsp1 protein_coding Interval_92515 chr2 60245822 60246024 + 0 NA exon (ENSMUSG00000026977.17, exon 2 of 2) protein_coding-exon (ENSMUSG00000026977.17, exon 2 of 2) 29651 ENSMUSG00000080198.2 ENSMUSG00000080198 ENSMUST00000116410 Rpl10a-ps4 processed_pseudogene Interval_96779 chr2 128152578 128152784 + 0 NA intron (ENSMUSG00000027381.16, intron 3 of 3) protein_coding-intron (ENSMUSG00000027381.16, intron 3 of 4) 26643 ENSMUSG00000027381.16 ENSMUSG00000027381 ENSMUST00000132201 Bcl2l11 protein_coding Interval_111782 chr4 28746686 28747226 + 0 NA Intergenic Intergenic -66370 ENSMUSG00000028289.12 ENSMUSG00000028289 ENSMUST00000129912 Epha7 protein_coding Interval_27285 chr11 65269404 65271299 + 0 NA promoter-TSS (ENSMUSG00000020542.18) protein_coding-promoter-TSS (ENSMUSG00000020542.18) -88194 ENSMUSG00000020542.18 ENSMUSG00000020542 ENSMUST00000150823 Myocd protein_coding Interval_55781 chr14 100009635 100010427 + 0 NA intron (ENSMUSG00000072294.5, intron 4 of 7) protein_coding-intron (ENSMUSG00000072294.5, intron 3 of 6) -109640 ENSMUSG00000072294.5 ENSMUSG00000072294 ENSMUST00000226544 Klf12 protein_coding Interval_109525 chr3 143925332 143925595 + 0 NA intron (ENSMUSG00000105811.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000105811.1, intron 1 of 1) 27416 ENSMUSG00000104865.1 ENSMUSG00000104865 ENSMUST00000196332 Gm42708 lincRNA Interval_164518 chr9 37635993 37636925 + 0 NA intron (ENSMUSG00000001942.8, intron 7 of 9) protein_coding-intron (ENSMUSG00000001942.8, intron 6 of 8) 20778 ENSMUSG00000011114.18 ENSMUSG00000011114 ENSMUST00000126062 Tbrg1 protein_coding Interval_19768 chr10 108604419 108604863 + 0 NA intron (ENSMUSG00000035864.14, intron 9 of 11) protein_coding-intron (ENSMUSG00000035864.14, intron 8 of 10) 95519 ENSMUSG00000112039.1 ENSMUSG00000112039 ENSMUST00000218023 Gm5136 protein_coding Interval_150030 chr7 105205891 105206108 + 0 NA promoter-TSS (ENSMUSG00000048425.3) protein_coding-promoter-TSS (ENSMUSG00000048425.3) -844 ENSMUSG00000048425.3 ENSMUSG00000048425 ENSMUST00000050157 Olfr686 protein_coding Interval_81067 chr18 53524614 53525091 + 0 NA intron (ENSMUSG00000069378.14, intron 2 of 6) protein_coding-intron (ENSMUSG00000069378.14, intron 2 of 6) 61269 ENSMUSG00000069378.14 ENSMUSG00000069378 ENSMUST00000115398 Prdm6 protein_coding Interval_113387 chr4 54071747 54074217 + 0 NA Intergenic Intergenic 68925 ENSMUSG00000089552.1 ENSMUSG00000089552 ENSMUST00000158927 Gm24177 snoRNA Interval_140018 chr6 113448378 113449798 + 0 NA TTS (ENSMUSG00000051256.10) protein_coding-TTS (ENSMUSG00000051256.10) 6493 ENSMUSG00000051256.10 ENSMUSG00000051256 ENSMUST00000204254 Jagn1 protein_coding Interval_82387 chr18 73608579 73609446 + 0 NA Intergenic Intergenic -2504 ENSMUSG00000064527.1 ENSMUSG00000064527 ENSMUST00000082593 Gm26438 misc_RNA Interval_173395 chrX 87931466 87932079 + 0 NA intron (ENSMUSG00000052372.10, intron 1 of 10) protein_coding-intron (ENSMUSG00000052372.10, intron 1 of 8) -32284 ENSMUSG00000093056.2 ENSMUSG00000093056 ENSMUST00000175315 Gm24812 misc_RNA Interval_105594 chr3 87982608 87982927 + 0 NA Intergenic Intergenic 11638 ENSMUSG00000004891.16 ENSMUSG00000004891 ENSMUST00000160694 Nes protein_coding Interval_39650 chr12 91778473 91779524 + 0 NA intron (ENSMUSG00000020961.15, intron 1 of 6) protein_coding-intron (ENSMUSG00000020961.15, intron 1 of 6) -7828 ENSMUSG00000020961.15 ENSMUSG00000020961 ENSMUST00000166008 Ston2 protein_coding Interval_37427 chr12 68426244 68427265 + 0 NA intron (ENSMUSG00000113867.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000113867.1, intron 1 of 2) 13528 ENSMUSG00000113161.1 ENSMUSG00000113161 ENSMUST00000220950 Gm47457 TEC Interval_132780 chr5 147825417 147827117 + 0 NA Intergenic Intergenic 4022 ENSMUSG00000107065.1 ENSMUSG00000107065 ENSMUST00000202661 Gm43155 processed_pseudogene Interval_1754 chr1 33555152 33556834 + 0 NA intron (ENSMUSG00000026134.11, intron 7 of 13) protein_coding-intron (ENSMUSG00000026134.11, intron 7 of 13) 60839 ENSMUSG00000102714.1 ENSMUSG00000102714 ENSMUST00000192891 Gm37618 TEC Interval_151324 chr7 121034003 121035534 + 0 NA promoter-TSS (ENSMUSG00000030876.7) protein_coding-promoter-TSS (ENSMUSG00000030876.7) 328 ENSMUSG00000053358.2 ENSMUSG00000053358 ENSMUST00000065740 Gm9905 TEC Interval_174476 chrX 153142701 153142995 + 0 NA intron (ENSMUSG00000041658.12, intron 2 of 4) protein_coding-intron (ENSMUSG00000041658.12, intron 2 of 10) 2861 ENSMUSG00000041658.12 ENSMUSG00000041658 ENSMUST00000144175 Rragb protein_coding Interval_120875 chr4 151215112 151215406 + 0 NA intron (ENSMUSG00000014592.21, intron 6 of 24) protein_coding-intron (ENSMUSG00000014592.21, intron 6 of 23) 125689 ENSMUSG00000078491.2 ENSMUSG00000078491 ENSMUST00000105667 Gm13090 protein_coding Interval_64433 chr16 11339908 11341049 + 0 NA intron (ENSMUSG00000071669.14, intron 1 of 20) protein_coding-intron (ENSMUSG00000071669.14, intron 1 of 7) 17570 ENSMUSG00000071669.14 ENSMUSG00000071669 ENSMUST00000134941 Snx29 protein_coding Interval_93288 chr2 71703799 71704993 + 0 NA Intergenic Intergenic -15021 ENSMUSG00000064263.6 ENSMUSG00000064263 ENSMUST00000079720 Platr26 lincRNA Interval_111018 chr4 11253521 11254855 + 0 NA promoter-TSS (ENSMUSG00000040738.10) protein_coding-promoter-TSS (ENSMUSG00000040738.10) -18220 ENSMUSG00000040738.10 ENSMUSG00000040738 ENSMUST00000147372 Ints8 protein_coding Interval_59030 chr15 41865751 41867900 + 0 NA intron (ENSMUSG00000042895.6, intron 1 of 1) protein_coding-intron (ENSMUSG00000042895.6, intron 1 of 1) 2895 ENSMUSG00000042895.6 ENSMUSG00000042895 ENSMUST00000054742 Abra protein_coding Interval_40085 chr12 101063051 101064144 + 0 NA TTS (ENSMUSG00000041846.15) protein_coding-TTS (ENSMUSG00000041846.15) -18854 ENSMUSG00000097121.2 ENSMUSG00000097121 ENSMUST00000220889 D130020L05Rik antisense Interval_16538 chr10 63456621 63457473 + 0 NA promoter-TSS (ENSMUSG00000060843.11) protein_coding-promoter-TSS (ENSMUSG00000060843.11) -35258 ENSMUSG00000048185.5 ENSMUSG00000048185 ENSMUST00000054760 Gm7075 protein_coding Interval_52077 chr14 35222838 35223621 + 0 NA intron (ENSMUSG00000041078.7, intron 4 of 15) protein_coding-intron (ENSMUSG00000041078.7, intron 4 of 15) -3791 ENSMUSG00000115826.1 ENSMUSG00000115826 ENSMUST00000227262 Gm49034 processed_pseudogene Interval_40012 chr12 100489489 100489706 + 0 NA intron (ENSMUSG00000033530.8, intron 3 of 9) protein_coding-intron (ENSMUSG00000033530.8, intron 3 of 19) -23299 ENSMUSG00000033530.8 ENSMUSG00000033530 ENSMUST00000220614 Ttc7b protein_coding Interval_92354 chr2 59216110 59216545 + 0 NA intron (ENSMUSG00000026991.20, intron 2 of 4) protein_coding-intron (ENSMUSG00000026991.20, intron 2 of 21) 54400 ENSMUSG00000026991.20 ENSMUSG00000026991 ENSMUST00000124127 Pkp4 protein_coding Interval_109071 chr3 135571632 135572575 + 0 NA TTS (ENSMUSG00000028164.15) protein_coding-TTS (ENSMUSG00000028164.15) 8912 ENSMUSG00000028164.15 ENSMUSG00000028164 ENSMUST00000153412 Manba protein_coding Interval_63917 chr16 4566134 4566493 + 0 NA Intergenic Intergenic -7530 ENSMUSG00000005718.8 ENSMUSG00000005718 ENSMUST00000229956 Tfap4 protein_coding Interval_116973 chr4 118576106 118576807 + 0 NA intron (ENSMUSG00000028730.14, intron 17 of 21) protein_coding-intron (ENSMUSG00000028730.14, intron 18 of 22) -33167 ENSMUSG00000050854.9 ENSMUSG00000050854 ENSMUST00000154025 Tmem125 protein_coding Interval_36711 chr12 52370652 52370898 + 0 NA Intergenic Intergenic 77350 ENSMUSG00000112139.1 ENSMUSG00000112139 ENSMUST00000218097 Gm47431 lincRNA Interval_49393 chr13 111658915 111659577 + 0 NA Intergenic Intergenic -27087 ENSMUSG00000032727.14 ENSMUSG00000032727 ENSMUST00000232398 Mier3 protein_coding Interval_78269 chr18 11074757 11076111 + 0 NA intron (ENSMUSG00000005836.10, intron 6 of 6) protein_coding-intron (ENSMUSG00000005836.10, intron 6 of 6) 22390 ENSMUSG00000005836.10 ENSMUSG00000005836 ENSMUST00000234971 Gata6 protein_coding Interval_27582 chr11 68852454 68853390 + 0 NA intron (ENSMUSG00000018736.14, intron 1 of 7) protein_coding-intron (ENSMUSG00000018736.14, intron 1 of 8) 7074 ENSMUSG00000018736.14 ENSMUSG00000018736 ENSMUST00000127469 Ndel1 protein_coding Interval_151710 chr7 126199767 126201465 + 0 NA promoter-TSS (ENSMUSG00000000131.15) protein_coding-promoter-TSS (ENSMUSG00000000131.15) -13508 ENSMUSG00000000131.15 ENSMUSG00000000131 ENSMUST00000206784 Xpo6 protein_coding Interval_82021 chr18 67238915 67239450 + 0 NA intron (ENSMUSG00000062526.4, intron 2 of 4) protein_coding-intron (ENSMUSG00000062526.4, intron 2 of 10) 6259 ENSMUSG00000062526.4 ENSMUSG00000062526 ENSMUST00000237631 Mppe1 protein_coding Interval_41799 chr12 119475330 119476110 + 0 NA Intergenic Intergenic 91531 ENSMUSG00000114186.1 ENSMUSG00000114186 ENSMUST00000223043 Gm48681 lincRNA Interval_29019 chr11 79930161 79930698 + 0 NA Intergenic Intergenic 24448 ENSMUSG00000082252.1 ENSMUSG00000082252 ENSMUST00000122438 Gm11204 processed_pseudogene Interval_81952 chr18 66286835 66287346 + 0 NA intron (ENSMUSG00000046318.16, intron 3 of 3) protein_coding-intron (ENSMUSG00000046318.16, intron 2 of 11) 4742 ENSMUSG00000046318.16 ENSMUSG00000046318 ENSMUST00000151343 Ccbe1 protein_coding Interval_14569 chr10 36087439 36088156 + 0 NA Intergenic Intergenic -8079 ENSMUSG00000110987.1 ENSMUSG00000110987 ENSMUST00000215218 Gm47048 processed_pseudogene Interval_68473 chr16 77534988 77535297 + 0 NA intron (ENSMUSG00000090386.10, intron 2 of 3) processed_transcript-intron (ENSMUSG00000090386.10, intron 2 of 4) -4740 ENSMUSG00000103932.1 ENSMUSG00000103932 ENSMUST00000193506 Gm36963 TEC Interval_153641 chr8 4216844 4217738 + 0 NA promoter-TSS (ENSMUSG00000064125.14) protein_coding-promoter-TSS (ENSMUSG00000064125.14) -379 ENSMUSG00000064125.14 ENSMUSG00000064125 ENSMUST00000176227 Prr36 protein_coding Interval_167819 chr9 72876088 72876277 + 0 NA intron (ENSMUSG00000036030.9, intron 11 of 19) protein_coding-intron (ENSMUSG00000036030.9, intron 11 of 19) 6530 ENSMUSG00000102971.1 ENSMUSG00000102971 ENSMUST00000192843 A730062M13Rik TEC Interval_57385 chr15 10465857 10466255 + 0 NA intron (ENSMUSG00000044224.16, intron 1 of 11) protein_coding-intron (ENSMUSG00000044224.16, intron 1 of 11) -14146 ENSMUSG00000044224.16 ENSMUSG00000044224 ENSMUST00000147224 Dnajc21 protein_coding Interval_53836 chr14 62480336 62481675 + 0 NA exon (ENSMUSG00000100486.7, exon 1 of 4) protein_coding-exon (ENSMUSG00000100486.7, exon 1 of 4) -24719 ENSMUSG00000021933.11 ENSMUSG00000021933 ENSMUST00000128573 Gucy1b2 protein_coding Interval_82635 chr18 75548804 75549170 + 0 NA intron (ENSMUSG00000052928.9, intron 7 of 11) protein_coding-intron (ENSMUSG00000052928.9, intron 7 of 11) 34342 ENSMUSG00000097712.1 ENSMUSG00000097712 ENSMUST00000181913 Gm10532 antisense Interval_21833 chr11 4643230 4645004 + 0 NA intron (ENSMUSG00000020412.16, intron 2 of 18) protein_coding-intron (ENSMUSG00000020412.16, intron 2 of 19) 6370 ENSMUSG00000020412.16 ENSMUSG00000020412 ENSMUST00000109930 Ascc2 protein_coding Interval_61188 chr15 79853742 79854756 + 0 NA Intergenic Intergenic 11086 ENSMUSG00000115971.1 ENSMUSG00000115971 ENSMUST00000230701 Gm10856 lincRNA Interval_4674 chr1 76028764 76030128 + 0 NA Intergenic Intergenic -10690 ENSMUSG00000099996.1 ENSMUSG00000099996 ENSMUST00000188786 Gm29065 lincRNA Interval_120310 chr4 145351101 145351797 + 0 NA Intergenic Intergenic -36285 ENSMUSG00000028602.12 ENSMUSG00000028602 ENSMUST00000123027 Tnfrsf8 protein_coding Interval_83707 chr19 3867425 3867669 + 0 NA exon (ENSMUSG00000024843.15, exon 2 of 2) protein_coding-exon (ENSMUSG00000024843.15, exon 2 of 2) 126 ENSMUSG00000117912.1 ENSMUSG00000117912 ENSMUST00000235621 Gm50383 antisense Interval_161835 chr8 123105558 123107007 + 0 NA intron (ENSMUSG00000092329.1, intron 1 of 15) protein_coding-intron (ENSMUSG00000092329.1, intron 1 of 15) 1307 ENSMUSG00000098550.1 ENSMUSG00000098550 ENSMUST00000184697 Mir7079 miRNA Interval_32454 chr11 107637182 107637780 + 0 NA promoter-TSS (ENSMUSG00000098497.1) miRNA-promoter-TSS (ENSMUSG00000098497.1) -241 ENSMUSG00000098497.1 ENSMUSG00000098497 ENSMUST00000185044 Mir6932 miRNA Interval_154917 chr8 25036999 25039090 + 0 NA promoter-TSS (ENSMUSG00000037406.7) protein_coding-promoter-TSS (ENSMUSG00000037406.7) 116 ENSMUSG00000086289.3 ENSMUSG00000086289 ENSMUST00000211059 Gm16933 lincRNA Interval_10936 chr1 177257206 177259158 + 0 NA promoter-TSS (ENSMUSG00000019699.16) protein_coding-promoter-TSS (ENSMUSG00000019699.16) -590 ENSMUSG00000019699.16 ENSMUSG00000019699 ENSMUST00000211158 Akt3 protein_coding Interval_147375 chr7 66258670 66258906 + 0 NA TTS (ENSMUSG00000015133.17) protein_coding-TTS (ENSMUSG00000015133.17) 3682 ENSMUSG00000015133.17 ENSMUSG00000015133 ENSMUST00000154893 Lrrk1 protein_coding Interval_4698 chr1 77422248 77422915 + 0 NA intron (ENSMUSG00000026235.14, intron 4 of 15) protein_coding-intron (ENSMUSG00000026235.14, intron 5 of 17) 74187 ENSMUSG00000099141.1 ENSMUSG00000099141 ENSMUST00000184495 Mir6352 miRNA Interval_53755 chr14 61531818 61532479 + 0 NA exon (ENSMUSG00000021930.14, exon 5 of 5) protein_coding-exon (ENSMUSG00000021930.14, exon 5 of 5) -11579 ENSMUSG00000115802.1 ENSMUSG00000115802 ENSMUST00000226286 Vmn1r-ps136 unprocessed_pseudogene Interval_7501 chr1 131866916 131868440 + 0 NA promoter-TSS (ENSMUSG00000026433.13) protein_coding-promoter-TSS (ENSMUSG00000026433.13) 25 ENSMUSG00000026433.13 ENSMUSG00000026433 ENSMUST00000187084 Rab29 protein_coding Interval_159384 chr8 94205555 94206305 + 0 NA Intergenic Intergenic -17063 ENSMUSG00000110679.1 ENSMUSG00000110679 ENSMUST00000212707 Rpl10-ps5 processed_pseudogene Interval_10044 chr1 165316500 165316899 + 0 NA intron (ENSMUSG00000040836.15, intron 3 of 5) protein_coding-intron (ENSMUSG00000040836.15, intron 3 of 5) 20910 ENSMUSG00000040836.15 ENSMUSG00000040836 ENSMUST00000111450 Gpr161 protein_coding Interval_73564 chr17 40494898 40496759 + 0 NA Intergenic Intergenic -3942 ENSMUSG00000117057.1 ENSMUSG00000117057 ENSMUST00000232763 Gm49846 unprocessed_pseudogene Interval_134384 chr6 27982201 27982451 + 0 NA intron (ENSMUSG00000024211.15, intron 2 of 5) protein_coding-intron (ENSMUSG00000024211.15, intron 1 of 9) -45576 ENSMUSG00000076067.1 ENSMUSG00000076067 ENSMUST00000102113 Mir592 miRNA Interval_32200 chr11 106083812 106085480 + 0 NA promoter-TSS (ENSMUSG00000020700.11) protein_coding-promoter-TSS (ENSMUSG00000020700.11) -18341 ENSMUSG00000085255.1 ENSMUSG00000085255 ENSMUST00000140736 Taco1os antisense Interval_137319 chr6 71295291 71295561 + 0 NA intron (ENSMUSG00000073018.6, intron 1 of 1) transcribed_unprocessed_pseudogene-intron (ENSMUSG00000073018.6, intron 1 of 1) -4699 ENSMUSG00000073018.6 ENSMUSG00000073018 ENSMUST00000238902 Gm1070 transcribed_unprocessed_pseudogene Interval_92790 chr2 65441332 65442261 + 0 NA Intergenic Intergenic -65514 ENSMUSG00000088197.1 ENSMUSG00000088197 ENSMUST00000157572 Gm24138 snoRNA Interval_157803 chr8 73382792 73383054 + 0 NA Intergenic Intergenic -29383 ENSMUSG00000004383.18 ENSMUSG00000004383 ENSMUST00000146249 Large1 protein_coding Interval_101957 chr3 13225572 13225840 + 0 NA Intergenic Intergenic -62491 ENSMUSG00000102815.1 ENSMUSG00000102815 ENSMUST00000195003 Gm37813 TEC Interval_132754 chr5 147619517 147620898 + 0 NA intron (ENSMUSG00000029648.13, intron 1 of 2) protein_coding-intron (ENSMUSG00000029648.13, intron 14 of 29) 26600 ENSMUSG00000029648.13 ENSMUSG00000029648 ENSMUST00000031652 Flt1 protein_coding Interval_148056 chr7 78910324 78911380 + 0 NA exon (ENSMUSG00000030609.18, exon 4 of 4) protein_coding-exon (ENSMUSG00000030609.18, exon 4 of 4) -3477 ENSMUSG00000039236.18 ENSMUSG00000039236 ENSMUST00000205981 Isg20 protein_coding Interval_119739 chr4 139605020 139605342 + 0 NA intron (ENSMUSG00000094439.1, intron 2 of 29) protein_coding-intron (ENSMUSG00000041025.15, intron 5 of 10) 1995 ENSMUSG00000094439.1 ENSMUSG00000094439 ENSMUST00000178644 Gm21969 protein_coding Interval_158489 chr8 84020819 84022165 + 0 NA promoter-TSS (ENSMUSG00000047986.12) protein_coding-promoter-TSS (ENSMUSG00000047986.12) -4583 ENSMUSG00000047986.12 ENSMUSG00000047986 ENSMUST00000154171 Palm3 protein_coding Interval_79118 chr18 24694198 24694839 + 0 NA intron (ENSMUSG00000039616.10, intron 12 of 14) protein_coding-intron (ENSMUSG00000039616.10, intron 12 of 14) -8236 ENSMUSG00000084472.1 ENSMUSG00000084472 ENSMUST00000122523 n-R5s23 rRNA Interval_152492 chr7 133446751 133447404 + 0 NA Intergenic Intergenic -113876 ENSMUSG00000109619.1 ENSMUSG00000109619 ENSMUST00000209700 Gm45672 lincRNA Interval_71532 chr17 24376119 24376612 + 0 NA exon (ENSMUSG00000024130.16, exon 9 of 33) protein_coding-exon (ENSMUSG00000024130.16, exon 9 of 33) -13821 ENSMUSG00000095396.1 ENSMUSG00000095396 ENSMUST00000179484 Gm25618 snRNA Interval_143245 chr7 4716796 4717759 + 0 NA intron (ENSMUSG00000046456.14, intron 5 of 5) protein_coding-intron (ENSMUSG00000046456.14, intron 5 of 5) 7972 ENSMUSG00000046456.14 ENSMUSG00000046456 ENSMUST00000086363 Tmem150b protein_coding Interval_100962 chr2 173647276 173647656 + 0 NA intron (ENSMUSG00000055897.13, intron 1 of 4) transcribed_unprocessed_pseudogene-intron (ENSMUSG00000055897.13, intron 1 of 1) -12294 ENSMUSG00000027519.10 ENSMUSG00000027519 ENSMUST00000109110 Rab22a protein_coding Interval_82465 chr18 74237216 74238403 + 0 NA Intergenic Intergenic -3081 ENSMUSG00000118151.1 ENSMUSG00000118151 ENSMUST00000238110 Gm5690 processed_pseudogene Interval_149361 chr7 97695999 97697272 + 0 NA promoter-TSS (ENSMUSG00000025439.5) protein_coding-promoter-TSS (ENSMUSG00000025439.5) -92 ENSMUSG00000086993.1 ENSMUSG00000086993 ENSMUST00000141549 Rsf1os2 antisense Interval_24936 chr11 41693041 41693738 + 0 NA Intergenic Intergenic -16953 ENSMUSG00000087306.7 ENSMUSG00000087306 ENSMUST00000139508 A230004M16Rik processed_transcript Interval_165941 chr9 54835982 54836562 + 0 NA Intergenic Intergenic -10990 ENSMUSG00000111686.1 ENSMUSG00000111686 ENSMUST00000213253 Rab7-ps1 processed_pseudogene Interval_72981 chr17 33939426 33941233 + 0 NA promoter-TSS (ENSMUSG00000024309.15) protein_coding-promoter-TSS (ENSMUSG00000024309.15) -19 ENSMUSG00000024309.15 ENSMUSG00000024309 ENSMUST00000173678 Pfdn6 protein_coding Interval_158740 chr8 85687178 85687516 + 0 NA intron (ENSMUSG00000036902.11, intron 1 of 8) protein_coding-intron (ENSMUSG00000036902.11, intron 1 of 8) -13558 ENSMUSG00000098388.1 ENSMUSG00000098388 ENSMUST00000184375 Mir8109 miRNA Interval_117532 chr4 124456876 124457115 + 0 NA intron (ENSMUSG00000084757.7, intron 2 of 3) lincRNA-intron (ENSMUSG00000084757.7, intron 2 of 3) -5710 ENSMUSG00000084757.7 ENSMUSG00000084757 ENSMUST00000156566 1700057H15Rik lincRNA Interval_82636 chr18 75554661 75554944 + 0 NA intron (ENSMUSG00000052928.9, intron 7 of 11) protein_coding-intron (ENSMUSG00000052928.9, intron 7 of 11) 40157 ENSMUSG00000097712.1 ENSMUSG00000097712 ENSMUST00000181913 Gm10532 antisense Interval_173894 chrX 107684897 107685103 + 0 NA exon (ENSMUSG00000031241.17, exon 6 of 7) protein_coding-exon (ENSMUSG00000031241.17, exon 6 of 7) 17036 ENSMUSG00000031241.17 ENSMUSG00000031241 ENSMUST00000168403 Tbx22 protein_coding Interval_172640 chrX 38809483 38809758 + 0 NA intron (ENSMUSG00000051361.7, intron 1 of 3) protein_coding-intron (ENSMUSG00000051361.7, intron 1 of 3) 46877 ENSMUSG00000082723.1 ENSMUSG00000082723 ENSMUST00000122159 Gm14564 processed_pseudogene Interval_127656 chr5 106344219 106344797 + 0 NA Intergenic Intergenic -7027 ENSMUSG00000105531.1 ENSMUSG00000105531 ENSMUST00000198197 4930458A03Rik lincRNA Interval_95345 chr2 106808869 106809166 + 0 NA promoter-TSS (ENSMUSG00000105450.1) scaRNA-promoter-TSS (ENSMUSG00000105450.1) -318 ENSMUSG00000105886.1 ENSMUSG00000105886 ENSMUST00000200346 Gm22813 scaRNA Interval_98911 chr2 155963155 155964077 + 0 NA intron (ENSMUSG00000038241.16, intron 3 of 14) protein_coding-intron (ENSMUSG00000038241.16, intron 3 of 32) -18249 ENSMUSG00000038259.4 ENSMUSG00000038259 ENSMUST00000040162 Gdf5 protein_coding Interval_66174 chr16 32129904 32130998 + 0 NA Intergenic Intergenic 21586 ENSMUSG00000086146.1 ENSMUSG00000086146 ENSMUST00000125829 Gm15729 lincRNA Interval_70060 chr17 5067141 5067611 + 0 NA intron (ENSMUSG00000069729.14, intron 2 of 19) protein_coding-intron (ENSMUSG00000069729.14, intron 2 of 18) 44734 ENSMUSG00000081783.2 ENSMUSG00000081783 ENSMUST00000122283 Gm15599 processed_pseudogene Interval_84398 chr19 10618988 10619187 + 0 NA promoter-TSS (ENSMUSG00000024740.10) protein_coding-promoter-TSS (ENSMUSG00000024740.10) 93 ENSMUSG00000024740.10 ENSMUSG00000024740 ENSMUST00000236279 Ddb1 protein_coding Interval_135366 chr6 38643971 38644627 + 0 NA Intergenic Intergenic -7066 ENSMUSG00000071537.6 ENSMUSG00000071537 ENSMUST00000201345 Klrg2 protein_coding Interval_149602 chr7 99979236 99980563 + 0 NA intron (ENSMUSG00000058761.5, intron 1 of 5) protein_coding-intron (ENSMUSG00000058761.5, intron 1 of 5) -14165 ENSMUSG00000058761.5 ENSMUSG00000058761 ENSMUST00000174264 Rnf169 protein_coding Interval_79896 chr18 35792360 35792592 + 0 NA exon (ENSMUSG00000091896.8, exon 1 of 6) protein_coding-exon (ENSMUSG00000091896.8, exon 1 of 6) -7366 ENSMUSG00000117841.1 ENSMUSG00000117841 ENSMUST00000235919 Gm50371 processed_transcript Interval_105302 chr3 84695514 84697106 + 0 NA intron (ENSMUSG00000056498.13, intron 6 of 6) protein_coding-intron (ENSMUSG00000056498.13, intron 6 of 6) 30100 ENSMUSG00000056498.13 ENSMUSG00000056498 ENSMUST00000128344 Tmem154 protein_coding Interval_161023 chr8 116971347 116972484 + 0 NA exon (ENSMUSG00000031847.8, exon 3 of 3) protein_coding-exon (ENSMUSG00000031847.8, exon 3 of 3) 7044 ENSMUSG00000031847.8 ENSMUSG00000031847 ENSMUST00000213068 1700030J22Rik protein_coding Interval_81628 chr18 62527336 62527864 + 0 NA intron (ENSMUSG00000042211.7, intron 2 of 9) protein_coding-intron (ENSMUSG00000042211.7, intron 7 of 21) -6871 ENSMUSG00000042211.7 ENSMUSG00000042211 ENSMUST00000235807 Fbxo38 protein_coding Interval_153458 chr7 144931490 144932548 + 0 NA TTS (ENSMUSG00000031072.14) protein_coding-TTS (ENSMUSG00000031072.14) 7906 ENSMUSG00000070348.5 ENSMUSG00000070348 ENSMUST00000135985 Ccnd1 protein_coding Interval_6672 chr1 118661024 118661257 + 0 NA intron (ENSMUSG00000026380.10, intron 7 of 14) protein_coding-intron (ENSMUSG00000026380.10, intron 7 of 14) -9345 ENSMUSG00000101624.1 ENSMUSG00000101624 ENSMUST00000185504 Gm28882 processed_pseudogene Interval_173832 chrX 105864259 105864804 + 0 NA intron (ENSMUSG00000031229.16, intron 2 of 5) protein_coding-intron (ENSMUSG00000031229.16, intron 10 of 34) -9293 ENSMUSG00000084575.1 ENSMUSG00000084575 ENSMUST00000122626 Gm23656 snRNA Interval_147947 chr7 75801174 75803471 + 0 NA Intergenic Intergenic 18290 ENSMUSG00000097116.1 ENSMUSG00000097116 ENSMUST00000180744 Gm26729 processed_pseudogene Interval_119345 chr4 137025676 137025967 + 0 NA TTS (ENSMUSG00000077624.1) snoRNA-TTS (ENSMUSG00000077624.1) 137 ENSMUSG00000077624.1 ENSMUSG00000077624 ENSMUST00000104436 Gm23834 snoRNA Interval_128975 chr5 116415923 116416465 + 0 NA promoter-TSS (ENSMUSG00000041548.4) protein_coding-promoter-TSS (ENSMUSG00000041548.4) -302 ENSMUSG00000041548.4 ENSMUSG00000041548 ENSMUST00000133335 Hspb8 protein_coding Interval_100066 chr2 166891258 166892537 + 0 NA exon (ENSMUSG00000074582.10, exon 37 of 39) protein_coding-exon (ENSMUSG00000074582.10, exon 37 of 39) -14143 ENSMUSG00000002718.14 ENSMUSG00000002718 ENSMUST00000129061 Cse1l protein_coding Interval_171696 chr9 120208796 120209124 + 0 NA intron (ENSMUSG00000111360.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000111360.1, intron 1 of 2) 26396 ENSMUSG00000104494.1 ENSMUSG00000104494 ENSMUST00000193250 Gm37111 TEC Interval_7428 chr1 131244512 131246669 + 0 NA promoter-TSS (ENSMUSG00000026430.16) protein_coding-promoter-TSS (ENSMUSG00000026430.16) -12015 ENSMUSG00000026430.16 ENSMUSG00000026430 ENSMUST00000124796 Rassf5 protein_coding Interval_64375 chr16 10934346 10934646 + 0 NA exon (ENSMUSG00000095369.2, exon 2 of 6) processed_transcript-exon (ENSMUSG00000095369.2, exon 2 of 6) 2810 ENSMUSG00000095369.2 ENSMUSG00000095369 ENSMUST00000233047 Gm21859 processed_transcript Interval_104362 chr3 64121852 64122355 + 0 NA intron (ENSMUSG00000043897.13, intron 4 of 5) protein_coding-intron (ENSMUSG00000043897.13, intron 3 of 4) 12468 ENSMUSG00000089039.1 ENSMUSG00000089039 ENSMUST00000158414 Gm22165 snRNA Interval_75146 chr17 64012770 64013018 + 0 NA intron (ENSMUSG00000000127.15, intron 11 of 17) protein_coding-intron (ENSMUSG00000000127.15, intron 11 of 17) -149103 ENSMUSG00000045506.3 ENSMUSG00000045506 ENSMUST00000050753 A930002H24Rik protein_coding Interval_98777 chr2 154879806 154880222 + 0 NA intron (ENSMUSG00000074656.12, intron 4 of 9) protein_coding-intron (ENSMUSG00000074656.12, intron 4 of 8) 12768 ENSMUSG00000074656.12 ENSMUSG00000074656 ENSMUST00000135524 Eif2s2 protein_coding Interval_61893 chr15 84994817 84995038 + 0 NA Intergenic Intergenic -6376 ENSMUSG00000036046.14 ENSMUSG00000036046 ENSMUST00000170863 5031439G07Rik protein_coding Interval_78515 chr18 13969894 13971559 + 0 NA intron (ENSMUSG00000024420.9, intron 1 of 2) protein_coding-intron (ENSMUSG00000024420.9, intron 2 of 7) -67256 ENSMUSG00000117600.1 ENSMUSG00000117600 ENSMUST00000234954 Gm50094 TEC Interval_76371 chr17 79663788 79664049 + 0 NA intron (ENSMUSG00000036368.8, intron 5 of 10) protein_coding-intron (ENSMUSG00000036368.8, intron 5 of 10) -8482 ENSMUSG00000036368.8 ENSMUSG00000036368 ENSMUST00000224097 Rmdn2 protein_coding Interval_21760 chr11 4186297 4187459 + 0 NA promoter-TSS (ENSMUSG00000034412.13) protein_coding-promoter-TSS (ENSMUSG00000034412.13) 56 ENSMUSG00000034412.13 ENSMUSG00000034412 ENSMUST00000149465 Tbc1d10a protein_coding Interval_49160 chr13 108852102 108852316 + 0 NA intron (ENSMUSG00000021699.17, intron 3 of 3) protein_coding-intron (ENSMUSG00000021699.17, intron 1 of 16) -7957 ENSMUSG00000021699.17 ENSMUSG00000021699 ENSMUST00000155459 Pde4d protein_coding Interval_15168 chr10 43035797 43036090 + 0 NA intron (ENSMUSG00000111171.1, intron 1 of 2) protein_coding-intron (ENSMUSG00000038248.8, intron 5 of 6) 950 ENSMUSG00000111171.1 ENSMUSG00000111171 ENSMUST00000213469 Gm47815 antisense Interval_141062 chr6 124755531 124757202 + 0 NA promoter-TSS (ENSMUSG00000107478.1) protein_coding-promoter-TSS (ENSMUSG00000107478.1) -312 ENSMUSG00000004263.15 ENSMUSG00000004263 ENSMUST00000146872 Atn1 protein_coding Interval_79724 chr18 34732412 34733519 + 0 NA TTS (ENSMUSG00000044201.10) protein_coding-TTS (ENSMUSG00000044201.10) -3394 ENSMUSG00000078240.2 ENSMUSG00000078240 ENSMUST00000105038 Gm3550 protein_coding Interval_59043 chr15 42006793 42007114 + 0 NA Intergenic Intergenic 25789 ENSMUSG00000116215.1 ENSMUSG00000116215 ENSMUST00000229397 Gm5470 processed_pseudogene Interval_14708 chr10 39224382 39224976 + 0 NA Intergenic Intergenic -20367 ENSMUSG00000111008.1 ENSMUSG00000111008 ENSMUST00000213973 Gm31562 lincRNA Interval_32058 chr11 104937631 104937905 + 0 NA intron (ENSMUSG00000040838.10, intron 109 of 187) protein_coding-intron (ENSMUSG00000040838.10, intron 109 of 187) 9552 ENSMUSG00000080694.1 ENSMUSG00000080694 ENSMUST00000118253 Gm11621 processed_pseudogene Interval_109780 chr3 146916233 146916904 + 0 NA intron (ENSMUSG00000036745.15, intron 10 of 20) protein_coding-intron (ENSMUSG00000036745.15, intron 10 of 21) -27352 ENSMUSG00000036745.15 ENSMUSG00000036745 ENSMUST00000197547 Ttll7 protein_coding Interval_44913 chr13 49712854 49713399 + 0 NA promoter-TSS (ENSMUSG00000077360.1) snoRNA-promoter-TSS (ENSMUSG00000077360.1) -993 ENSMUSG00000077360.1 ENSMUSG00000077360 ENSMUST00000104172 Gm23482 snoRNA Interval_105536 chr3 87501199 87501889 + 0 NA TTS (ENSMUSG00000048031.15) protein_coding-TTS (ENSMUSG00000048031.15) -24034 ENSMUSG00000003382.18 ENSMUSG00000003382 ENSMUST00000152010 Etv3 protein_coding Interval_112430 chr4 41225348 41225616 + 0 NA intron (ENSMUSG00000028433.14, intron 7 of 8) protein_coding-intron (ENSMUSG00000028433.14, intron 7 of 28) -11629 ENSMUSG00000093562.1 ENSMUSG00000093562 ENSMUST00000177331 Gm23090 snoRNA Interval_162882 chr9 11368196 11368461 + 0 NA Intergenic Intergenic -90285 ENSMUSG00000110734.1 ENSMUSG00000110734 ENSMUST00000216671 Gm18934 processed_pseudogene Interval_172938 chrX 56786383 56786787 + 0 NA promoter-TSS (ENSMUSG00000023092.16) protein_coding-promoter-TSS (ENSMUSG00000023092.16) 6766 ENSMUSG00000023092.16 ENSMUSG00000023092 ENSMUST00000153401 Fhl1 protein_coding Interval_172376 chrX 15053848 15054053 + 0 NA Intergenic Intergenic 57516 ENSMUSG00000045217.5 ENSMUSG00000045217 ENSMUST00000173100 Ppp1r2-ps9 transcribed_processed_pseudogene Interval_115570 chr4 100898865 100899937 + 0 NA intron (ENSMUSG00000028532.14, intron 3 of 26) protein_coding-intron (ENSMUSG00000028532.14, intron 3 of 26) -95309 ENSMUSG00000028532.14 ENSMUSG00000028532 ENSMUST00000136430 Cachd1 protein_coding Interval_115041 chr4 88793832 88794736 + 0 NA promoter-TSS (ENSMUSG00000099518.1) protein_coding-promoter-TSS (ENSMUSG00000099518.1) -203 ENSMUSG00000099518.1 ENSMUSG00000099518 ENSMUST00000178347 Gm13275 protein_coding Interval_134433 chr6 28618468 28619599 + 0 NA intron (ENSMUSG00000001424.14, intron 1 of 4) protein_coding-intron (ENSMUSG00000001424.14, intron 10 of 23) 50961 ENSMUSG00000103132.1 ENSMUSG00000103132 ENSMUST00000194736 Gm37978 TEC Interval_102215 chr3 19530546 19531116 + 0 NA promoter-TSS (ENSMUSG00000027606.12) protein_coding-promoter-TSS (ENSMUSG00000027606.12) -416 ENSMUSG00000027606.12 ENSMUSG00000027606 ENSMUST00000165693 Dnajc5b protein_coding Interval_47128 chr13 76064307 76065458 + 0 NA intron (ENSMUSG00000021592.18, intron 7 of 7) protein_coding-intron (ENSMUSG00000021592.18, intron 7 of 7) -7886 ENSMUSG00000045509.7 ENSMUSG00000045509 ENSMUST00000056130 Gpr150 protein_coding Interval_57804 chr15 20967121 20967863 + 0 NA intron (ENSMUSG00000040452.9, intron 3 of 3) protein_coding-intron (ENSMUSG00000040452.9, intron 3 of 3) 47278 ENSMUSG00000098821.1 ENSMUSG00000098821 ENSMUST00000184997 Gm27397 miRNA Interval_46220 chr13 62652741 62653736 + 0 NA Intergenic Intergenic -9986 ENSMUSG00000114172.1 ENSMUSG00000114172 ENSMUST00000223394 Gm36298 processed_pseudogene Interval_114185 chr4 66354979 66355897 + 0 NA intron (ENSMUSG00000028373.16, intron 1 of 21) protein_coding-intron (ENSMUSG00000028373.16, intron 1 of 22) 1589 ENSMUSG00000083080.1 ENSMUSG00000083080 ENSMUST00000119808 Gm11484 processed_pseudogene Interval_112272 chr4 39564846 39565276 + 0 NA Intergenic Intergenic 114766 ENSMUSG00000028287.4 ENSMUSG00000028287 ENSMUST00000029955 1700009N14Rik protein_coding Interval_39849 chr12 99055727 99056016 + 0 NA intron (ENSMUSG00000114089.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000114089.1, intron 1 of 1) 7587 ENSMUSG00000114089.1 ENSMUSG00000114089 ENSMUST00000220675 Gm47116 lincRNA Interval_12006 chr1 188713850 188714399 + 0 NA intron (ENSMUSG00000026609.15, intron 37 of 70) protein_coding-intron (ENSMUSG00000026609.15, intron 37 of 70) -46352 ENSMUSG00000084550.1 ENSMUSG00000084550 ENSMUST00000122601 Gm25269 snRNA Interval_31595 chr11 101588930 101591646 + 0 NA TTS (ENSMUSG00000034947.13) protein_coding-TTS (ENSMUSG00000034947.13) 8044 ENSMUSG00000034947.13 ENSMUSG00000034947 ENSMUST00000128659 Tmem106a protein_coding Interval_60215 chr15 68218021 68218214 + 0 NA intron (ENSMUSG00000022335.17, intron 2 of 13) protein_coding-intron (ENSMUSG00000022335.17, intron 2 of 4) 40670 ENSMUSG00000022335.17 ENSMUSG00000022335 ENSMUST00000161139 Zfat protein_coding Interval_10004 chr1 164898835 164900002 + 0 NA exon (ENSMUSG00000103659.1, exon 1 of 3) antisense-exon (ENSMUSG00000103659.1, exon 1 of 3) -23065 ENSMUSG00000103320.1 ENSMUSG00000103320 ENSMUST00000193775 Gm37403 TEC Interval_76811 chr17 84225939 84226572 + 0 NA intron (ENSMUSG00000024251.10, intron 9 of 12) protein_coding-intron (ENSMUSG00000024251.10, intron 34 of 37) -38308 ENSMUSG00000045817.8 ENSMUSG00000045817 ENSMUST00000060366 Zfp36l2 protein_coding Interval_134096 chr6 19863992 19864598 + 0 NA Intergenic Intergenic 76242 ENSMUSG00000107067.1 ENSMUSG00000107067 ENSMUST00000201774 Gm42581 processed_pseudogene Interval_114228 chr4 68983468 68983889 + 0 NA Intergenic Intergenic -126993 ENSMUSG00000065815.1 ENSMUSG00000065815 ENSMUST00000083881 Gm24697 snRNA Interval_81838 chr18 65180273 65180717 + 0 NA promoter-TSS (ENSMUSG00000024589.18) protein_coding-promoter-TSS (ENSMUSG00000024589.18) -63792 ENSMUSG00000118017.1 ENSMUSG00000118017 ENSMUST00000235231 Gm29966 lincRNA Interval_93243 chr2 71402415 71403329 + 0 NA intron (ENSMUSG00000027018.11, intron 2 of 10) protein_coding-intron (ENSMUSG00000027018.11, intron 2 of 10) 10045 ENSMUSG00000086846.2 ENSMUSG00000086846 ENSMUST00000121697 Gm13642 processed_pseudogene Interval_99586 chr2 163374368 163376657 + 0 NA intron (ENSMUSG00000017817.11, intron 3 of 6) protein_coding-intron (ENSMUSG00000017817.11, intron 2 of 5) 22481 ENSMUSG00000017817.11 ENSMUSG00000017817 ENSMUST00000109425 Jph2 protein_coding Interval_104014 chr3 57293048 57293736 + 0 NA exon (ENSMUSG00000027800.14, exon 1 of 2) protein_coding-exon (ENSMUSG00000027800.14, exon 1 of 2) 1160 ENSMUSG00000027800.14 ENSMUSG00000027800 ENSMUST00000196704 Tm4sf1 protein_coding Interval_136612 chr6 56685849 56687423 + 0 NA Intergenic Intergenic 18074 ENSMUSG00000091625.8 ENSMUSG00000091625 ENSMUST00000176595 Lsm5 protein_coding Interval_82322 chr18 70633061 70633581 + 0 NA Intergenic Intergenic 14716 ENSMUSG00000117810.1 ENSMUSG00000117810 ENSMUST00000236578 Gm8934 processed_pseudogene Interval_159235 chr8 92031139 92032414 + 0 NA intron (ENSMUSG00000101613.1, intron 3 of 3) lincRNA-intron (ENSMUSG00000101613.1, intron 3 of 3) 7334 ENSMUSG00000101613.1 ENSMUSG00000101613 ENSMUST00000190257 Gm28516 lincRNA Interval_58410 chr15 34279140 34279630 + 0 NA intron (ENSMUSG00000022257.4, intron 2 of 2) protein_coding-intron (ENSMUSG00000022257.4, intron 6 of 6) 6125 ENSMUSG00000022257.4 ENSMUSG00000022257 ENSMUST00000228547 Laptm4b protein_coding Interval_157295 chr8 69104118 69104361 + 0 NA intron (ENSMUSG00000006273.14, intron 9 of 9) protein_coding-intron (ENSMUSG00000006273.14, intron 9 of 13) -15004 ENSMUSG00000036330.12 ENSMUSG00000036330 ENSMUST00000142710 Slc18a1 protein_coding Interval_75048 chr17 62335963 62336459 + 0 NA Intergenic Intergenic 99846 ENSMUSG00000117066.1 ENSMUSG00000117066 ENSMUST00000232942 Gm49860 lincRNA Interval_56288 chr14 116513450 116513905 + 0 NA intron (ENSMUSG00000022112.14, intron 7 of 7) protein_coding-intron (ENSMUSG00000022112.14, intron 7 of 7) -236538 ENSMUSG00000104296.1 ENSMUSG00000104296 ENSMUST00000193536 Gm38045 TEC Interval_31721 chr11 102455583 102456828 + 0 NA promoter-TSS (ENSMUSG00000034664.13) protein_coding-promoter-TSS (ENSMUSG00000034664.13) 2360 ENSMUSG00000034664.13 ENSMUSG00000034664 ENSMUST00000130757 Itga2b protein_coding Interval_16647 chr10 66806920 66807843 + 0 NA Intergenic Intergenic -2459 ENSMUSG00000112425.1 ENSMUSG00000112425 ENSMUST00000220426 Gm47896 lincRNA Interval_45847 chr13 58524240 58524805 + 0 NA Intergenic Intergenic -21506 ENSMUSG00000114234.1 ENSMUSG00000114234 ENSMUST00000223882 Gm3131 processed_pseudogene Interval_24668 chr11 35782378 35783197 + 0 NA TTS (ENSMUSG00000065553.1) miRNA-TTS (ENSMUSG00000065553.1) 391 ENSMUSG00000065553.1 ENSMUSG00000065553 ENSMUST00000083619 Mir103-1 miRNA Interval_13799 chr10 22604808 22605239 + 0 NA Intergenic Intergenic -43985 ENSMUSG00000037490.5 ENSMUSG00000037490 ENSMUST00000159174 Slc2a12 protein_coding Interval_138680 chr6 91116037 91117358 + 0 NA promoter-TSS (ENSMUSG00000030091.17) protein_coding-promoter-TSS (ENSMUSG00000030091.17) 4238 ENSMUSG00000107882.1 ENSMUSG00000107882 ENSMUST00000204082 Gm44278 lincRNA Interval_95531 chr2 111650020 111650278 + 0 NA promoter-TSS (ENSMUSG00000109487.3) protein_coding-promoter-TSS (ENSMUSG00000109487.3) -948 ENSMUSG00000109487.3 ENSMUSG00000109487 ENSMUST00000119566 Olfr1298 protein_coding Interval_50774 chr14 19759172 19762381 + 0 NA intron (ENSMUSG00000021806.4, intron 2 of 16) protein_coding-intron (ENSMUSG00000021806.4, intron 2 of 20) 9492 ENSMUSG00000021806.4 ENSMUSG00000021806 ENSMUST00000224057 Nid2 protein_coding Interval_88318 chr2 3686779 3687146 + 0 NA exon (ENSMUSG00000081070.1, exon 1 of 1) processed_pseudogene-exon (ENSMUSG00000081070.1, exon 1 of 1) 600 ENSMUSG00000081070.1 ENSMUSG00000081070 ENSMUST00000120117 Gm13181 processed_pseudogene Interval_47355 chr13 81782772 81783946 + 0 NA promoter-TSS (ENSMUSG00000021537.9) protein_coding-promoter-TSS (ENSMUSG00000021537.9) 390 ENSMUSG00000097793.1 ENSMUSG00000097793 ENSMUST00000181520 Gm17259 antisense Interval_142370 chr6 141087806 141088378 + 0 NA Intergenic Intergenic -49955 ENSMUSG00000107462.1 ENSMUSG00000107462 ENSMUST00000203682 Gm7384 processed_pseudogene Interval_153163 chr7 141992533 141993389 + 0 NA promoter-TSS (ENSMUSG00000053046.16) protein_coding-promoter-TSS (ENSMUSG00000053046.16) 782 ENSMUSG00000092652.1 ENSMUSG00000092652 ENSMUST00000174911 Mir3104 miRNA Interval_6719 chr1 118968975 118971025 + 0 NA intron (ENSMUSG00000048402.14, intron 2 of 9) protein_coding-intron (ENSMUSG00000048402.14, intron 2 of 13) 15780 ENSMUSG00000098273.1 ENSMUSG00000098273 ENSMUST00000183982 Mir6346 miRNA Interval_36248 chr12 40278329 40280102 + 0 NA Intergenic Intergenic 49763 ENSMUSG00000055917.15 ENSMUSG00000055917 ENSMUST00000221847 Zfp277 protein_coding Interval_67846 chr16 57851820 57852104 + 0 NA intron (ENSMUSG00000116920.1, intron 1 of 3) lincRNA-intron (ENSMUSG00000116920.1, intron 1 of 3) 32177 ENSMUSG00000095926.1 ENSMUSG00000095926 ENSMUST00000157878 Gm24039 snoRNA Interval_52659 chr14 48344949 48345305 + 0 NA Intergenic Intergenic 17488 ENSMUSG00000114991.1 ENSMUSG00000114991 ENSMUST00000228144 1700128I11Rik lincRNA Interval_139375 chr6 99614908 99616438 + 0 NA intron (ENSMUSG00000030068.4, intron 1 of 1) protein_coding-intron (ENSMUSG00000030068.4, intron 3 of 5) 16703 ENSMUSG00000030068.4 ENSMUSG00000030068 ENSMUST00000176255 Gm20696 protein_coding Interval_70171 chr17 5947033 5948344 + 0 NA intron (ENSMUSG00000023805.17, intron 1 of 25) protein_coding-intron (ENSMUSG00000023805.17, intron 1 of 25) 8601 ENSMUSG00000116734.1 ENSMUSG00000116734 ENSMUST00000231634 Gm8376 processed_pseudogene Interval_47526 chr13 86378538 86379540 + 0 NA Intergenic Intergenic 143212 ENSMUSG00000098152.1 ENSMUSG00000098152 ENSMUST00000182392 Gm27025 processed_pseudogene Interval_71612 chr17 24856769 24858732 + 0 NA promoter-TSS (ENSMUSG00000024158.17) protein_coding-promoter-TSS (ENSMUSG00000024158.17) 7171 ENSMUSG00000024158.17 ENSMUSG00000024158 ENSMUST00000163132 Hagh protein_coding Interval_110823 chr4 8745384 8746181 + 0 NA intron (ENSMUSG00000041235.12, intron 1 of 1) protein_coding-intron (ENSMUSG00000041235.12, intron 1 of 37) -72200 ENSMUSG00000082122.1 ENSMUSG00000082122 ENSMUST00000120923 Gm11809 processed_pseudogene Interval_156548 chr8 50863805 50864007 + 0 NA intron (ENSMUSG00000110246.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000110246.1, intron 2 of 6) 53091 ENSMUSG00000110246.1 ENSMUSG00000110246 ENSMUST00000211313 C130073E24Rik lincRNA Interval_92 GL456221.1 109413 111264 + 0 NA NA NA NA NA Interval_29141 chr11 80601805 80603403 + 0 NA intron (ENSMUSG00000035441.14, intron 16 of 20) protein_coding-intron (ENSMUSG00000035441.14, intron 16 of 21) -93498 ENSMUSG00000085078.1 ENSMUSG00000085078 ENSMUST00000133400 C030013C21Rik sense_intronic Interval_133075 chr5 149663142 149663990 + 0 NA Intergenic Intergenic -2343 ENSMUSG00000080002.2 ENSMUSG00000080002 ENSMUST00000116118 Gm5566 processed_pseudogene Interval_52845 chr14 51041686 51042313 + 0 NA promoter-TSS (ENSMUSG00000052382.5) protein_coding-promoter-TSS (ENSMUSG00000052382.5) -130 ENSMUSG00000052382.5 ENSMUSG00000052382 ENSMUST00000064214 Rnase9 protein_coding Interval_15035 chr10 42120792 42121715 + 0 NA Intergenic Intergenic -65947 ENSMUSG00000085666.3 ENSMUSG00000085666 ENSMUST00000121229 Tdg-ps2 processed_pseudogene Interval_110159 chr3 153882629 153882868 + 0 NA intron (ENSMUSG00000005493.15, intron 9 of 20) protein_coding-intron (ENSMUSG00000005493.15, intron 8 of 19) -2505 ENSMUSG00000005493.15 ENSMUSG00000005493 ENSMUST00000190449 Msh4 protein_coding Interval_129239 chr5 118380471 118381999 + 0 NA Intergenic Intergenic 16095 ENSMUSG00000106812.1 ENSMUSG00000106812 ENSMUST00000201179 Gm28563 lincRNA Interval_44535 chr13 45827623 45827924 + 0 NA intron (ENSMUSG00000046876.16, intron 2 of 2) protein_coding-intron (ENSMUSG00000046876.16, intron 3 of 7) 78201 ENSMUSG00000114131.1 ENSMUSG00000114131 ENSMUST00000221126 Gm47460 antisense Interval_27532 chr11 68489292 68489604 + 0 NA intron (ENSMUSG00000020901.13, intron 4 of 7) protein_coding-intron (ENSMUSG00000020901.13, intron 6 of 18) -13643 ENSMUSG00000046207.14 ENSMUSG00000046207 ENSMUST00000131669 Pik3r6 protein_coding Interval_149786 chr7 101501046 101501948 + 0 NA promoter-TSS (ENSMUSG00000110195.1) protein_coding-promoter-TSS (ENSMUSG00000110195.1) 26121 ENSMUSG00000065446.1 ENSMUSG00000065446 ENSMUST00000083512 Mir139 miRNA Interval_32799 chr11 110774551 110775120 + 0 NA Intergenic Intergenic -193198 ENSMUSG00000051497.15 ENSMUSG00000051497 ENSMUST00000178798 Kcnj16 protein_coding Interval_92622 chr2 61611515 61611710 + 0 NA intron (ENSMUSG00000064289.15, intron 2 of 8) protein_coding-intron (ENSMUSG00000064289.15, intron 1 of 7) -32219 ENSMUSG00000064289.15 ENSMUSG00000064289 ENSMUST00000154693 Tank protein_coding Interval_14944 chr10 41320522 41320810 + 0 NA intron (ENSMUSG00000091415.5, intron 5 of 39) protein_coding-intron (ENSMUSG00000091415.5, intron 5 of 39) 16686 ENSMUSG00000091415.5 ENSMUSG00000091415 ENSMUST00000173494 Ak9 protein_coding Interval_44795 chr13 48686644 48687148 + 0 NA Intergenic Intergenic 23898 ENSMUSG00000021381.4 ENSMUSG00000021381 ENSMUST00000021813 Barx1 protein_coding Interval_81026 chr18 53106485 53107430 + 0 NA Intergenic Intergenic -69432 ENSMUSG00000034484.8 ENSMUSG00000034484 ENSMUST00000236111 Snx2 protein_coding Interval_57640 chr15 13094166 13095827 + 0 NA intron (ENSMUSG00000039385.5, intron 1 of 3) protein_coding-intron (ENSMUSG00000039385.5, intron 1 of 11) 78679 ENSMUSG00000039385.5 ENSMUSG00000039385 ENSMUST00000226917 Cdh6 protein_coding Interval_122808 chr5 25671002 25672570 + 0 NA Intergenic Intergenic -11631 ENSMUSG00000059244.6 ENSMUSG00000059244 ENSMUST00000072180 Gm10062 lincRNA Interval_153612 chr8 3723870 3724932 + 0 NA intron (ENSMUSG00000089956.1, intron 2 of 2) antisense-intron (ENSMUSG00000089956.1, intron 2 of 2) 4836 ENSMUSG00000084633.1 ENSMUSG00000084633 ENSMUST00000122684 Gm23886 misc_RNA Interval_135821 chr6 47555989 47556251 + 0 NA TTS (ENSMUSG00000029687.16) protein_coding-TTS (ENSMUSG00000029687.16) -29096 ENSMUSG00000107628.1 ENSMUSG00000107628 ENSMUST00000203199 Gm44282 processed_pseudogene Interval_148687 chr7 84144831 84146091 + 0 NA intron (ENSMUSG00000038459.10, intron 1 of 2) protein_coding-intron (ENSMUSG00000038459.10, intron 1 of 2) 6209 ENSMUSG00000038459.10 ENSMUSG00000038459 ENSMUST00000208271 Abhd17c protein_coding Interval_13618 chr10 20215966 20217823 + 0 NA intron (ENSMUSG00000019996.17, intron 1 of 5) protein_coding-intron (ENSMUSG00000019996.17, intron 1 of 17) 8404 ENSMUSG00000111356.1 ENSMUSG00000111356 ENSMUST00000216127 Rpl32l processed_pseudogene Interval_40497 chr12 105258872 105259594 + 0 NA Intergenic Intergenic -36537 ENSMUSG00000041359.14 ENSMUSG00000041359 ENSMUST00000176952 Tcl1 protein_coding Interval_111704 chr4 26368264 26369973 + 0 NA exon (ENSMUSG00000096105.1, exon 1 of 1) processed_pseudogene-exon (ENSMUSG00000096105.1, exon 1 of 1) 1089 ENSMUSG00000096105.1 ENSMUSG00000096105 ENSMUST00000178743 Bhmt-ps1 processed_pseudogene Interval_112524 chr4 41842213 41842581 + 0 NA Intergenic Intergenic 33314 ENSMUSG00000082962.3 ENSMUSG00000082962 ENSMUST00000120436 Gm10601 unprocessed_pseudogene Interval_108001 chr3 119538141 119538422 + 0 NA Intergenic Intergenic 100593 ENSMUSG00000087806.1 ENSMUSG00000087806 ENSMUST00000157181 Gm23432 snoRNA Interval_174554 chrX 157601401 157601742 + 0 NA Intergenic Intergenic 2596 ENSMUSG00000081415.1 ENSMUSG00000081415 ENSMUST00000117734 Gm15176 processed_pseudogene Interval_33381 chr11 116226551 116226839 + 0 NA intron (ENSMUSG00000034282.3, intron 18 of 21) protein_coding-intron (ENSMUSG00000034282.3, intron 18 of 21) 10209 ENSMUSG00000092300.7 ENSMUSG00000092300 ENSMUST00000173567 Cdk3 polymorphic_pseudogene Interval_41817 chr12 119856861 119857612 + 0 NA Intergenic Intergenic 19406 ENSMUSG00000114137.1 ENSMUSG00000114137 ENSMUST00000222158 Gm48685 unprocessed_pseudogene Interval_161976 chr8 124224082 124224422 + 0 NA intron (ENSMUSG00000092329.1, intron 1 of 15) protein_coding-intron (ENSMUSG00000092329.1, intron 1 of 15) 64179 ENSMUSG00000110482.1 ENSMUSG00000110482 ENSMUST00000212467 Gm3889 processed_pseudogene Interval_117389 chr4 123395835 123396042 + 0 NA exon (ENSMUSG00000028649.21, exon 57 of 93) protein_coding-exon (ENSMUSG00000028649.21, exon 57 of 93) -39679 ENSMUSG00000081528.1 ENSMUSG00000081528 ENSMUST00000121747 Gm12924 processed_pseudogene Interval_91201 chr2 35879620 35880485 + 0 NA intron (ENSMUSG00000026885.13, intron 6 of 9) protein_coding-intron (ENSMUSG00000026885.13, intron 6 of 9) 35857 ENSMUSG00000106994.1 ENSMUSG00000106994 ENSMUST00000202084 Gm10829 TEC Interval_20685 chr10 120231874 120232372 + 0 NA TTS (ENSMUSG00000020224.15) protein_coding-TTS (ENSMUSG00000020224.15) 5021 ENSMUSG00000020224.15 ENSMUSG00000020224 ENSMUST00000130198 Llph protein_coding Interval_17816 chr10 80245032 80245870 + 0 NA Intergenic Intergenic -4034 ENSMUSG00000020153.14 ENSMUSG00000020153 ENSMUST00000155336 Ndufs7 protein_coding Interval_23940 chr11 28639987 28640224 + 0 NA Intergenic Intergenic -41459 ENSMUSG00000084966.1 ENSMUSG00000084966 ENSMUST00000146554 2810471M01Rik lincRNA Interval_121543 chr5 3332404 3333902 + 0 NA Intergenic Intergenic 62834 ENSMUSG00000106658.1 ENSMUSG00000106658 ENSMUST00000197473 Gm36548 lincRNA Interval_48035 chr13 95435204 95435472 + 0 NA intron (ENSMUSG00000021680.8, intron 6 of 6) protein_coding-intron (ENSMUSG00000021680.8, intron 6 of 6) 9586 ENSMUSG00000021680.8 ENSMUSG00000021680 ENSMUST00000045583 Crhbp protein_coding Interval_103215 chr3 36913645 36914300 + 0 NA intron (ENSMUSG00000037270.18, intron 13 of 47) protein_coding-intron (ENSMUSG00000037270.18, intron 15 of 85) 43944 ENSMUSG00000037270.18 ENSMUSG00000037270 ENSMUST00000196036 4932438A13Rik protein_coding Interval_9100 chr1 153585242 153585958 + 0 NA Intergenic Intergenic 35073 ENSMUSG00000099858.1 ENSMUSG00000099858 ENSMUST00000186414 Gm6652 processed_pseudogene Interval_110670 chr4 6157012 6157490 + 0 NA Intergenic Intergenic -33847 ENSMUSG00000028243.5 ENSMUSG00000028243 ENSMUST00000029907 Ubxn2b protein_coding Interval_129177 chr5 118004387 118005380 + 0 NA intron (ENSMUSG00000032898.9, intron 11 of 11) protein_coding-intron (ENSMUSG00000032898.9, intron 11 of 11) 22487 ENSMUSG00000107058.1 ENSMUSG00000107058 ENSMUST00000202755 Gm42545 TEC Interval_164906 chr9 43015434 43016111 + 0 NA intron (ENSMUSG00000059495.14, intron 11 of 40) protein_coding-intron (ENSMUSG00000059495.14, intron 11 of 41) 10888 ENSMUSG00000059495.14 ENSMUSG00000059495 ENSMUST00000214175 Arhgef12 protein_coding Interval_39260 chr12 86285651 86285979 + 0 NA intron (ENSMUSG00000021254.9, intron 9 of 9) protein_coding-intron (ENSMUSG00000021254.9, intron 8 of 8) 20191 ENSMUSG00000097488.1 ENSMUSG00000097488 ENSMUST00000181495 4732487G21Rik lincRNA Interval_38034 chr12 74320424 74320744 + 0 NA Intergenic Intergenic -3422 ENSMUSG00000113031.1 ENSMUSG00000113031 ENSMUST00000223381 Gm34552 lincRNA Interval_120569 chr4 149432101 149433430 + 0 NA Intergenic Intergenic -6780 ENSMUSG00000028960.20 ENSMUSG00000028960 ENSMUST00000131986 Ube4b protein_coding Interval_174131 chrX 135973286 135975396 + 0 NA Intergenic Intergenic -14206 ENSMUSG00000083223.1 ENSMUSG00000083223 ENSMUST00000117300 Gm15016 processed_pseudogene Interval_24480 chr11 33575004 33575188 + 0 NA intron (ENSMUSG00000020159.8, intron 1 of 3) protein_coding-intron (ENSMUSG00000020159.8, intron 1 of 9) 3863 ENSMUSG00000020159.8 ENSMUSG00000020159 ENSMUST00000135350 Gabrp protein_coding Interval_16916 chr10 69872387 69872732 + 0 NA TTS (ENSMUSG00000069601.14) protein_coding-TTS (ENSMUSG00000069601.14) -302452 ENSMUSG00000048701.13 ENSMUSG00000048701 ENSMUST00000135607 Ccdc6 protein_coding Interval_83589 chr18 90322512 90323166 + 0 NA promoter-TSS (ENSMUSG00000117726.1) processed_pseudogene-promoter-TSS (ENSMUSG00000117726.1) 41 ENSMUSG00000117726.1 ENSMUSG00000117726 ENSMUST00000237935 Gm7674 processed_pseudogene Interval_90836 chr2 32902361 32902711 + 0 NA intron (ENSMUSG00000026796.16, intron 1 of 2) protein_coding-intron (ENSMUSG00000026796.16, intron 1 of 13) -12175 ENSMUSG00000026796.16 ENSMUSG00000026796 ENSMUST00000151607 Fam129b protein_coding Interval_79564 chr18 33796306 33797328 + 0 NA TTS (ENSMUSG00000087590.2) lincRNA-TTS (ENSMUSG00000087590.2) 1653 ENSMUSG00000092819.1 ENSMUSG00000092819 ENSMUST00000175078 Gm23639 snoRNA Interval_46963 chr13 73768190 73768719 + 0 NA intron (ENSMUSG00000017756.9, intron 1 of 6) protein_coding-intron (ENSMUSG00000017756.9, intron 1 of 23) -36155 ENSMUSG00000017756.9 ENSMUSG00000017756 ENSMUST00000221813 Slc12a7 protein_coding Interval_97234 chr2 132474232 132474546 + 0 NA Intergenic Intergenic -16339 ENSMUSG00000086379.7 ENSMUSG00000086379 ENSMUST00000144501 1700026D11Rik antisense Interval_65916 chr16 30215811 30216344 + 0 NA Intergenic Intergenic -10198 ENSMUSG00000097621.1 ENSMUSG00000097621 ENSMUST00000181113 Gm26562 lincRNA Interval_10113 chr1 165880213 165880498 + 0 NA promoter-TSS (ENSMUSG00000026565.18) protein_coding-promoter-TSS (ENSMUSG00000026565.18) -195 ENSMUSG00000026565.18 ENSMUSG00000026565 ENSMUST00000176800 Pou2f1 protein_coding Interval_125256 chr5 65696857 65698739 + 0 NA promoter-TSS (ENSMUSG00000029202.12) protein_coding-promoter-TSS (ENSMUSG00000029202.12) -15454 ENSMUSG00000107050.1 ENSMUSG00000107050 ENSMUST00000202959 C030017G13Rik TEC Interval_15966 chr10 59731066 59731826 + 0 NA intron (ENSMUSG00000020111.15, intron 2 of 12) protein_coding-intron (ENSMUSG00000020111.15, intron 2 of 13) 22656 ENSMUSG00000090350.1 ENSMUSG00000090350 ENSMUST00000164702 Gm17148 processed_pseudogene Interval_52532 chr14 47341392 47342184 + 0 NA Intergenic Intergenic -20732 ENSMUSG00000115728.1 ENSMUSG00000115728 ENSMUST00000227470 Gm49190 processed_pseudogene Interval_58 GL456212.1 99972 102407 + 0 NA NA NA NA NA Interval_80237 chr18 38459512 38460259 + 0 NA intron (ENSMUSG00000024425.4, intron 3 of 3) protein_coding-intron (ENSMUSG00000024425.4, intron 6 of 7) 8575 ENSMUSG00000024425.4 ENSMUSG00000024425 ENSMUST00000238135 Ndfip1 protein_coding Interval_30122 chr11 89391436 89392457 + 0 NA exon (ENSMUSG00000047773.15, exon 4 of 4) protein_coding-exon (ENSMUSG00000047773.15, exon 4 of 4) 89223 ENSMUSG00000085798.1 ENSMUSG00000085798 ENSMUST00000140754 Gm2018 lincRNA Interval_46372 chr13 64301583 64302585 + 0 NA intron (ENSMUSG00000021482.10, intron 4 of 5) protein_coding-intron (ENSMUSG00000021482.10, intron 3 of 4) -5560 ENSMUSG00000089092.1 ENSMUSG00000089092 ENSMUST00000158467 Gm25654 snRNA Interval_72032 chr17 27652354 27653974 + 0 NA Intergenic Intergenic -2424 ENSMUSG00000040276.15 ENSMUSG00000040276 ENSMUST00000231854 Pacsin1 protein_coding Interval_26182 chr11 54942586 54943362 + 0 NA intron (ENSMUSG00000020400.17, intron 1 of 1) protein_coding-intron (ENSMUSG00000020400.17, intron 1 of 17) -4461 ENSMUSG00000082180.1 ENSMUSG00000082180 ENSMUST00000118301 Gm12230 processed_pseudogene Interval_36863 chr12 54795173 54797030 + 0 NA promoter-TSS (ENSMUSG00000005656.9) protein_coding-promoter-TSS (ENSMUSG00000005656.9) -414 ENSMUSG00000005656.9 ENSMUSG00000005656 ENSMUST00000219865 Snx6 protein_coding Interval_140454 chr6 118327253 118327759 + 0 NA Intergenic Intergenic -19122 ENSMUSG00000107933.1 ENSMUSG00000107933 ENSMUST00000204033 Gm30498 lincRNA Interval_57919 chr15 25402894 25404207 + 0 NA intron (ENSMUSG00000045763.8, intron 1 of 2) protein_coding-intron (ENSMUSG00000045763.8, intron 1 of 1) 10148 ENSMUSG00000045763.8 ENSMUSG00000045763 ENSMUST00000228597 Basp1 protein_coding Interval_150582 chr7 112626355 112627171 + 0 NA intron (ENSMUSG00000085945.3, intron 2 of 3) bidirectional_promoter_lncRNA-intron (ENSMUSG00000085945.3, intron 2 of 3) -8538 ENSMUSG00000093002.1 ENSMUSG00000093002 ENSMUST00000175261 Gm24154 snoRNA Interval_37061 chr12 57211356 57212543 + 0 NA Intergenic Intergenic -18463 ENSMUSG00000079104.4 ENSMUSG00000079104 ENSMUST00000139049 Prps1l3 protein_coding Interval_139332 chr6 98999096 98999988 + 0 NA intron (ENSMUSG00000030067.17, intron 5 of 14) protein_coding-intron (ENSMUSG00000030067.17, intron 6 of 15) 44900 ENSMUSG00000030067.17 ENSMUSG00000030067 ENSMUST00000175838 Foxp1 protein_coding Interval_66301 chr16 33006380 33007149 + 0 NA intron (ENSMUSG00000022801.13, intron 18 of 18) protein_coding-intron (ENSMUSG00000022801.13, intron 20 of 20) 4861 ENSMUSG00000070225.1 ENSMUSG00000070225 ENSMUST00000093713 n-R5s33 rRNA Interval_92028 chr2 52693672 52693993 + 0 NA exon (ENSMUSG00000055371.17, exon 14 of 14) protein_coding-exon (ENSMUSG00000055371.17, exon 14 of 14) -17250 ENSMUSG00000017412.15 ENSMUSG00000017412 ENSMUST00000148837 Cacnb4 protein_coding Interval_153817 chr8 8973452 8974040 + 0 NA Intergenic Intergenic -41047 ENSMUSG00000109346.1 ENSMUSG00000109346 ENSMUST00000209045 Gm44515 lincRNA Interval_152951 chr7 139994299 139995210 + 0 NA Intergenic Intergenic -2246 ENSMUSG00000025473.16 ENSMUSG00000025473 ENSMUST00000173209 Adam8 protein_coding Interval_143614 chr7 13184661 13184920 + 0 NA exon (ENSMUSG00000117853.1, exon 3 of 3) protein_coding-exon (ENSMUSG00000117853.1, exon 3 of 3) 5887 ENSMUSG00000048261.6 ENSMUSG00000048261 ENSMUST00000122190 Gm4879 processed_pseudogene Interval_66613 chr16 35644844 35646087 + 0 NA exon (ENSMUSG00000052133.16, exon 5 of 6) protein_coding-exon (ENSMUSG00000052133.16, exon 5 of 6) -13120 ENSMUSG00000052133.16 ENSMUSG00000052133 ENSMUST00000128966 Sema5b protein_coding Interval_36776 chr12 53699810 53700075 + 0 NA intron (ENSMUSG00000021010.9, intron 3 of 10) protein_coding-intron (ENSMUSG00000021010.9, intron 4 of 11) 379450 ENSMUSG00000099407.1 ENSMUSG00000099407 ENSMUST00000185390 1700060O08Rik antisense Interval_170189 chr9 106069317 106069534 + 0 NA intron (ENSMUSG00000032572.9, intron 6 of 37) protein_coding-intron (ENSMUSG00000032572.9, intron 6 of 37) -26049 ENSMUSG00000103434.1 ENSMUSG00000103434 ENSMUST00000192983 Gm36993 TEC Interval_103082 chr3 35113715 35114069 + 0 NA Intergenic Intergenic 162239 ENSMUSG00000105651.1 ENSMUSG00000105651 ENSMUST00000198307 1700017M07Rik lincRNA Interval_82219 chr18 69345849 69346704 + 0 NA promoter-TSS (ENSMUSG00000053477.17) protein_coding-promoter-TSS (ENSMUSG00000053477.17) 89988 ENSMUSG00000098060.1 ENSMUSG00000098060 ENSMUST00000183237 Gm4842 processed_pseudogene Interval_16249 chr10 61714668 61716011 + 0 NA promoter-TSS (ENSMUSG00000020085.15) protein_coding-promoter-TSS (ENSMUSG00000020085.15) -12809 ENSMUSG00000020085.15 ENSMUSG00000020085 ENSMUST00000140664 Aifm2 protein_coding Interval_171284 chr9 116050149 116050556 + 0 NA intron (ENSMUSG00000056880.12, intron 13 of 13) protein_coding-intron (ENSMUSG00000056880.12, intron 14 of 14) -9288 ENSMUSG00000080848.3 ENSMUSG00000080848 ENSMUST00000117563 Gm9385 processed_pseudogene Interval_86116 chr19 36854805 36855094 + 0 NA TTS (ENSMUSG00000024811.11) protein_coding-TTS (ENSMUSG00000024811.11) 5578 ENSMUSG00000024811.11 ENSMUSG00000024811 ENSMUST00000168654 Tnks2 protein_coding Interval_45081 chr13 51935931 51936213 + 0 NA Intergenic Intergenic -37142 ENSMUSG00000097495.1 ENSMUSG00000097495 ENSMUST00000181851 Gm26651 lincRNA Interval_87641 chr19 53924629 53925898 + 0 NA intron (ENSMUSG00000024975.13, intron 8 of 12) protein_coding-intron (ENSMUSG00000024975.13, intron 8 of 11) 18968 ENSMUSG00000084957.3 ENSMUSG00000084957 ENSMUST00000236900 Bbip1 protein_coding Interval_99886 chr2 165608113 165608326 + 0 NA intron (ENSMUSG00000017897.18, intron 1 of 15) protein_coding-intron (ENSMUSG00000017897.18, intron 1 of 15) -6432 ENSMUSG00000100796.1 ENSMUSG00000100796 ENSMUST00000187099 Gm28163 lincRNA Interval_46216 chr13 62576615 62577261 + 0 NA Intergenic Intergenic -18343 ENSMUSG00000074865.11 ENSMUSG00000074865 ENSMUST00000221279 Zfp934 protein_coding Interval_88413 chr2 4923843 4924308 + 0 NA intron (ENSMUSG00000026664.7, intron 2 of 4) protein_coding-intron (ENSMUSG00000026664.7, intron 2 of 8) 4995 ENSMUSG00000026664.7 ENSMUSG00000026664 ENSMUST00000128738 Phyh protein_coding Interval_101792 chr3 9576284 9577211 + 0 NA intron (ENSMUSG00000040209.12, intron 1 of 8) protein_coding-intron (ENSMUSG00000040209.12, intron 1 of 8) -11448 ENSMUSG00000040209.12 ENSMUSG00000040209 ENSMUST00000192832 Zfp704 protein_coding Interval_120768 chr4 150544429 150546210 + 0 NA intron (ENSMUSG00000039852.17, intron 11 of 22) protein_coding-intron (ENSMUSG00000039852.17, intron 5 of 16) 23225 ENSMUSG00000085213.1 ENSMUSG00000085213 ENSMUST00000128800 Gm13091 antisense Interval_58510 chr15 35325643 35327040 + 0 NA intron (ENSMUSG00000115453.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000115453.1, intron 1 of 2) 2194 ENSMUSG00000115453.1 ENSMUSG00000115453 ENSMUST00000227345 BC048602 lincRNA Interval_87459 chr19 52129623 52130212 + 0 NA Intergenic Intergenic -134380 ENSMUSG00000035804.5 ENSMUSG00000035804 ENSMUST00000039652 Ins1 protein_coding Interval_102384 chr3 23025978 23026352 + 0 NA Intergenic Intergenic -46254 ENSMUSG00000103275.1 ENSMUSG00000103275 ENSMUST00000192280 Gm36983 unprocessed_pseudogene Interval_47803 chr13 93143949 93145277 + 0 NA exon (ENSMUSG00000047419.5, exon 1 of 13) protein_coding-exon (ENSMUSG00000047419.5, exon 1 of 13) 111 ENSMUSG00000047419.5 ENSMUSG00000047419 ENSMUST00000062122 Cmya5 protein_coding Interval_25876 chr11 52297307 52297971 + 0 NA Intergenic Intergenic 21584 ENSMUSG00000086395.1 ENSMUSG00000086395 ENSMUST00000150973 A630014C17Rik antisense Interval_151799 chr7 126742207 126742912 + 0 NA promoter-TSS (ENSMUSG00000108554.1) processed_pseudogene-promoter-TSS (ENSMUSG00000108554.1) -123 ENSMUSG00000108554.1 ENSMUSG00000108554 ENSMUST00000207021 Gm44824 processed_pseudogene Interval_95104 chr2 103931779 103933136 + 0 NA Intergenic Intergenic 20433 ENSMUSG00000084756.1 ENSMUSG00000084756 ENSMUST00000149025 Gm13881 lincRNA Interval_96424 chr2 122377191 122378824 + 0 NA Intergenic Intergenic 7633 ENSMUSG00000088506.1 ENSMUSG00000088506 ENSMUST00000157881 Gm24409 snRNA Interval_57411 chr15 10642746 10643725 + 0 NA intron (ENSMUSG00000022246.14, intron 2 of 16) protein_coding-intron (ENSMUSG00000022246.14, intron 2 of 17) 42898 ENSMUSG00000115667.1 ENSMUSG00000115667 ENSMUST00000228059 Gm10389 antisense Interval_81118 chr18 54126749 54127579 + 0 NA Intergenic Intergenic -95856 ENSMUSG00000117769.1 ENSMUSG00000117769 ENSMUST00000237377 Gm8594 processed_pseudogene Interval_150816 chr7 114926925 114927764 + 0 NA exon (ENSMUSG00000046411.2, exon 1 of 1) processed_pseudogene-exon (ENSMUSG00000046411.2, exon 1 of 1) 382 ENSMUSG00000046411.2 ENSMUSG00000046411 ENSMUST00000059737 Rps4l-ps processed_pseudogene Interval_131311 chr5 136333963 136334568 + 0 NA intron (ENSMUSG00000029705.17, intron 9 of 20) protein_coding-intron (ENSMUSG00000029705.17, intron 9 of 23) 15966 ENSMUSG00000102415.1 ENSMUSG00000102415 ENSMUST00000195666 A430110C17Rik TEC Interval_59366 chr15 51938396 51938809 + 0 NA Intergenic Intergenic 41515 ENSMUSG00000115616.1 ENSMUSG00000115616 ENSMUST00000226818 Gm48923 lincRNA Interval_146019 chr7 43249973 43250954 + 0 NA Intergenic Intergenic 36424 ENSMUSG00000074887.4 ENSMUSG00000074887 ENSMUST00000163106 EU599041 lincRNA Interval_112813 chr4 45229893 45231003 + 0 NA intron (ENSMUSG00000035615.12, intron 2 of 6) protein_coding-intron (ENSMUSG00000035615.12, intron 2 of 15) 13542 ENSMUSG00000086284.1 ENSMUSG00000086284 ENSMUST00000134640 Frmpd1os antisense Interval_165316 chr9 46229612 46230715 + 0 NA TTS (ENSMUSG00000032083.8) protein_coding-TTS (ENSMUSG00000032083.8) 1442 ENSMUSG00000032083.8 ENSMUSG00000032083 ENSMUST00000132155 Apoa1 protein_coding Interval_27945 chr11 71285676 71285885 + 0 NA promoter-TSS (ENSMUSG00000092528.9) transcribed_unprocessed_pseudogene-promoter-TSS (ENSMUSG00000092528.9) 2778 ENSMUSG00000096455.1 ENSMUSG00000096455 ENSMUST00000104152 Gm23311 snoRNA Interval_72109 chr17 28084868 28085202 + 0 NA Intergenic Intergenic -4740 ENSMUSG00000117120.1 ENSMUSG00000117120 ENSMUST00000141806 Gm50238 processed_transcript Interval_16213 chr10 61465250 61467264 + 0 NA Intergenic Intergenic -9544 ENSMUSG00000037151.8 ENSMUSG00000037151 ENSMUST00000049242 Lrrc20 protein_coding Interval_160683 chr8 111568243 111568451 + 0 NA intron (ENSMUSG00000033545.14, intron 1 of 1) protein_coding-intron (ENSMUSG00000033545.14, intron 1 of 3) 30769 ENSMUSG00000033545.14 ENSMUSG00000033545 ENSMUST00000173819 Znrf1 protein_coding Interval_112651 chr4 43810824 43812728 + 0 NA Intergenic Intergenic -11521 ENSMUSG00000081329.1 ENSMUSG00000081329 ENSMUST00000117665 Gm12492 processed_pseudogene Interval_8043 chr1 135391539 135391850 + 0 NA intron (ENSMUSG00000041879.13, intron 16 of 24) protein_coding-intron (ENSMUSG00000041879.13, intron 15 of 23) -2994 ENSMUSG00000041879.13 ENSMUSG00000041879 ENSMUST00000159173 Ipo9 protein_coding Interval_18986 chr10 93588924 93589988 + 0 NA promoter-TSS (ENSMUSG00000097407.1) lincRNA-promoter-TSS (ENSMUSG00000097407.1) 43 ENSMUSG00000097407.1 ENSMUSG00000097407 ENSMUST00000181835 4933408J17Rik lincRNA Interval_109672 chr3 145904635 145906121 + 0 NA Intergenic Intergenic -18979 ENSMUSG00000028191.11 ENSMUSG00000028191 ENSMUST00000198122 Bcl10 protein_coding Interval_82568 chr18 75209581 75210761 + 0 NA intron (ENSMUSG00000035765.10, intron 14 of 16) protein_coding-intron (ENSMUSG00000035765.10, intron 14 of 16) -27357 ENSMUSG00000094153.2 ENSMUSG00000094153 ENSMUST00000179328 Gm8807 processed_pseudogene Interval_36965 chr12 55727366 55727645 + 0 NA intron (ENSMUSG00000021027.17, intron 16 of 39) protein_coding-intron (ENSMUSG00000021027.17, intron 16 of 40) 89022 ENSMUSG00000112393.1 ENSMUSG00000112393 ENSMUST00000217762 Gm48655 TEC Interval_161539 chr8 121080606 121080801 + 0 NA intron (ENSMUSG00000097336.8, intron 1 of 6) protein_coding-intron (ENSMUSG00000092329.1, intron 1 of 15) 2407 ENSMUSG00000097336.8 ENSMUSG00000097336 ENSMUST00000182264 Fendrr processed_transcript Interval_81385 chr18 60085399 60086086 + 0 NA Intergenic Intergenic -88575 ENSMUSG00000094901.1 ENSMUSG00000094901 ENSMUST00000179918 Gm23576 miRNA Interval_35348 chr12 20920218 20921839 + 0 NA promoter-TSS (ENSMUSG00000085642.8) transcribed_unprocessed_pseudogene-promoter-TSS (ENSMUSG00000085642.8) 234 ENSMUSG00000069755.5 ENSMUSG00000069755 ENSMUST00000208744 Zfp125 transcribed_unprocessed_pseudogene Interval_15940 chr10 59503508 59504505 + 0 NA intron (ENSMUSG00000009647.13, intron 1 of 7) protein_coding-intron (ENSMUSG00000009647.13, intron 1 of 7) -72920 ENSMUSG00000009654.4 ENSMUSG00000009654 ENSMUST00000162493 Oit3 protein_coding Interval_5263 chr1 87055004 87055207 + 0 NA intron (ENSMUSG00000099401.1, intron 2 of 3) antisense-intron (ENSMUSG00000099401.1, intron 2 of 3) 2491 ENSMUSG00000099401.1 ENSMUSG00000099401 ENSMUST00000185304 Gm28375 antisense Interval_111409 chr4 21222343 21223144 + 0 NA Intergenic Intergenic -47332 ENSMUSG00000088073.1 ENSMUSG00000088073 ENSMUST00000157448 Gm22817 ribozyme Interval_33200 chr11 115186923 115187961 + 0 NA promoter-TSS (ENSMUSG00000045980.13) protein_coding-promoter-TSS (ENSMUSG00000045980.13) -109 ENSMUSG00000045980.13 ENSMUSG00000045980 ENSMUST00000156230 Tmem104 protein_coding Interval_23429 chr11 22587793 22588885 + 0 NA Intergenic Intergenic -29069 ENSMUSG00000086256.1 ENSMUSG00000086256 ENSMUST00000142151 Gm12052 lincRNA Interval_71880 chr17 26698204 26699290 + 0 NA TTS (ENSMUSG00000015575.15) protein_coding-TTS (ENSMUSG00000015575.15) 22590 ENSMUSG00000015575.15 ENSMUSG00000015575 ENSMUST00000167352 Atp6v0e protein_coding Interval_146739 chr7 49832443 49832651 + 0 NA intron (ENSMUSG00000030505.17, intron 13 of 15) protein_coding-intron (ENSMUSG00000030505.17, intron 13 of 15) 18345 ENSMUSG00000109154.1 ENSMUSG00000109154 ENSMUST00000208559 Gm44822 TEC Interval_43631 chr13 34235750 34235948 + 0 NA intron (ENSMUSG00000038267.15, intron 3 of 9) protein_coding-intron (ENSMUSG00000038267.15, intron 3 of 10) 41403 ENSMUSG00000088573.1 ENSMUSG00000088573 ENSMUST00000157948 Gm24530 misc_RNA Interval_54466 chr14 69994647 69995809 + 0 NA intron (ENSMUSG00000022085.4, intron 4 of 6) protein_coding-intron (ENSMUSG00000022085.4, intron 4 of 6) 62139 ENSMUSG00000114446.1 ENSMUSG00000114446 ENSMUST00000224990 Gm33524 antisense Interval_149521 chr7 99316053 99316626 + 0 NA intron (ENSMUSG00000055407.14, intron 2 of 2) protein_coding-intron (ENSMUSG00000055407.14, intron 2 of 3) -4861 ENSMUSG00000109460.1 ENSMUSG00000109460 ENSMUST00000129058 Gm45591 sense_intronic Interval_132297 chr5 143999369 143999981 + 0 NA intron (ENSMUSG00000029617.10, intron 2 of 4) protein_coding-intron (ENSMUSG00000029617.10, intron 8 of 14) 4484 ENSMUSG00000029617.10 ENSMUSG00000029617 ENSMUST00000199922 Ccz1 protein_coding Interval_5714 chr1 91167788 91168460 + 0 NA promoter-TSS (ENSMUSG00000070732.2) protein_coding-promoter-TSS (ENSMUSG00000070732.2) 4024 ENSMUSG00000100018.1 ENSMUSG00000100018 ENSMUST00000191211 Gm7776 processed_pseudogene Interval_154007 chr8 11830468 11830863 + 0 NA exon (ENSMUSG00000031511.16, exon 1 of 2) protein_coding-exon (ENSMUSG00000031511.16, exon 1 of 2) 9735 ENSMUSG00000086500.1 ENSMUSG00000086500 ENSMUST00000152264 Gm15875 bidirectional_promoter_lncRNA Interval_57777 chr15 19580005 19580412 + 0 NA Intergenic Intergenic -98024 ENSMUSG00000115413.1 ENSMUSG00000115413 ENSMUST00000226230 Gm49166 lincRNA Interval_48740 chr13 102665014 102666224 + 0 NA Intergenic Intergenic -27992 ENSMUSG00000021624.9 ENSMUSG00000021624 ENSMUST00000172138 Cd180 protein_coding Interval_92204 chr2 56248117 56248538 + 0 NA Intergenic Intergenic 208474 ENSMUSG00000082142.1 ENSMUSG00000082142 ENSMUST00000120018 Gm13518 processed_pseudogene Interval_69738 chr16 95952704 95953790 + 0 NA Intergenic Intergenic 37643 ENSMUSG00000022913.16 ENSMUSG00000022913 ENSMUST00000233134 Psmg1 protein_coding Interval_159976 chr8 105531914 105532208 + 0 NA intron (ENSMUSG00000013160.7, intron 1 of 1) protein_coding-intron (ENSMUSG00000013160.7, intron 2 of 7) 7415 ENSMUSG00000013160.7 ENSMUSG00000013160 ENSMUST00000144486 Atp6v0d1 protein_coding Interval_75989 chr17 74209292 74209760 + 0 NA intron (ENSMUSG00000058704.9, intron 4 of 5) protein_coding-intron (ENSMUSG00000058704.9, intron 7 of 8) -2432 ENSMUSG00000117262.1 ENSMUSG00000117262 ENSMUST00000233585 Gm9316 processed_pseudogene Interval_138650 chr6 90742606 90744252 + 0 NA intron (ENSMUSG00000034312.15, intron 1 of 13) protein_coding-intron (ENSMUSG00000034312.15, intron 1 of 13) 38652 ENSMUSG00000034312.15 ENSMUSG00000034312 ENSMUST00000238855 Iqsec1 protein_coding Interval_168388 chr9 79936022 79937364 + 0 NA intron (ENSMUSG00000034898.17, intron 1 of 1) protein_coding-intron (ENSMUSG00000034898.17, intron 1 of 5) 23493 ENSMUSG00000092581.1 ENSMUSG00000092581 ENSMUST00000172721 Gm3211 processed_transcript Interval_99518 chr2 162921932 162922950 + 0 NA Intergenic Intergenic -9087 ENSMUSG00000016921.14 ENSMUSG00000016921 ENSMUST00000126163 Srsf6 protein_coding Interval_124482 chr5 48724146 48724340 + 0 NA intron (ENSMUSG00000029088.16, intron 1 of 8) protein_coding-intron (ENSMUSG00000029088.16, intron 1 of 8) -8352 ENSMUSG00000105530.1 ENSMUSG00000105530 ENSMUST00000196191 Gm43829 TEC Interval_87183 chr19 46692558 46692814 + 0 NA intron (ENSMUSG00000062376.7, intron 1 of 4) protein_coding-intron (ENSMUSG00000062376.7, intron 1 of 4) 2780 ENSMUSG00000062376.7 ENSMUSG00000062376 ENSMUST00000074912 Borcs7 protein_coding Interval_70969 chr17 16926578 16926776 + 0 NA Intergenic Intergenic -24875 ENSMUSG00000060149.7 ENSMUSG00000060149 ENSMUST00000071374 BC002059 lincRNA Interval_104277 chr3 62527312 62527645 + 0 NA Intergenic Intergenic -25345 ENSMUSG00000027770.5 ENSMUSG00000027770 ENSMUST00000192223 Dhx36 protein_coding Interval_154708 chr8 22750038 22751407 + 0 NA Intergenic Intergenic -7073 ENSMUSG00000031538.6 ENSMUSG00000031538 ENSMUST00000211033 Plat protein_coding Interval_57290 chr15 8465380 8465685 + 0 NA Intergenic Intergenic 16413 ENSMUSG00000115640.1 ENSMUSG00000115640 ENSMUST00000228313 Gm49247 lincRNA Interval_69306 chr16 92082112 92082295 + 0 NA exon (ENSMUSG00000089774.2, exon 2 of 2) protein_coding-exon (ENSMUSG00000089774.2, exon 2 of 2) 4141 ENSMUSG00000089774.2 ENSMUSG00000089774 ENSMUST00000131098 Slc5a3 protein_coding Interval_30916 chr11 97207009 97207354 + 0 NA exon (ENSMUSG00000001441.13, exon 2 of 2) protein_coding-exon (ENSMUSG00000001441.13, exon 2 of 2) -41781 ENSMUSG00000001440.5 ENSMUSG00000001440 ENSMUST00000153727 Kpnb1 protein_coding Interval_56471 chr14 118976912 118977956 + 0 NA intron (ENSMUSG00000022136.8, intron 11 of 11) protein_coding-intron (ENSMUSG00000022136.8, intron 11 of 11) 6326 ENSMUSG00000115220.1 ENSMUSG00000115220 ENSMUST00000227218 Gm49768 lincRNA Interval_30363 chr11 93884835 93886687 + 0 NA promoter-TSS (ENSMUSG00000059474.13) protein_coding-promoter-TSS (ENSMUSG00000059474.13) -9618 ENSMUSG00000054079.12 ENSMUSG00000054079 ENSMUST00000134807 Utp18 protein_coding Interval_123943 chr5 36776794 36779206 + 0 NA Intergenic Intergenic -11305 ENSMUSG00000115557.1 ENSMUSG00000115557 ENSMUST00000227994 Gm40318 unitary_pseudogene Interval_106211 chr3 94636450 94636816 + 0 NA intron (ENSMUSG00000005968.14, intron 1 of 5) protein_coding-intron (ENSMUSG00000005968.14, intron 3 of 12) -6465 ENSMUSG00000118474.1 ENSMUSG00000118474 ENSMUST00000238219 Gm10972 processed_pseudogene Interval_141547 chr6 129094562 129095580 + 0 NA exon (ENSMUSG00000030155.7, exon 3 of 5) protein_coding-exon (ENSMUSG00000030155.7, exon 3 of 5) 5842 ENSMUSG00000030155.7 ENSMUSG00000030155 ENSMUST00000032258 Clec2e protein_coding Interval_92032 chr2 52756640 52757282 + 0 NA Intergenic Intergenic -14771 ENSMUSG00000055371.17 ENSMUSG00000055371 ENSMUST00000138290 Stam2 protein_coding Interval_62787 chr15 96962479 96962733 + 0 NA Intergenic Intergenic -39201 ENSMUSG00000116202.1 ENSMUSG00000116202 ENSMUST00000229718 Rpl10a-ps3 processed_pseudogene Interval_74736 chr17 56233389 56234379 + 0 NA Intergenic Intergenic -5025 ENSMUSG00000117176.1 ENSMUSG00000117176 ENSMUST00000232819 Gm49879 processed_pseudogene Interval_68376 chr16 74935690 74935876 + 0 NA Intergenic Intergenic -25457 ENSMUSG00000098143.1 ENSMUSG00000098143 ENSMUST00000182628 Gm26937 processed_pseudogene Interval_53496 chr14 57847988 57849170 + 0 NA intron (ENSMUSG00000021969.8, intron 7 of 12) protein_coding-intron (ENSMUSG00000021969.8, intron 7 of 12) -17370 ENSMUSG00000065374.1 ENSMUSG00000065374 ENSMUST00000083440 Gm22738 snRNA Interval_10204 chr1 167134651 167134985 + 0 NA Intergenic Intergenic -6337 ENSMUSG00000102870.1 ENSMUSG00000102870 ENSMUST00000192761 Gm17868 unprocessed_pseudogene Interval_25416 chr11 47999965 48000859 + 0 NA Intergenic Intergenic -87867 ENSMUSG00000065804.1 ENSMUSG00000065804 ENSMUST00000083870 Gm23039 snRNA Interval_131591 chr5 138458289 138459017 + 0 NA exon (ENSMUSG00000036898.16, exon 5 of 5) protein_coding-exon (ENSMUSG00000036898.16, exon 5 of 5) 17142 ENSMUSG00000036898.16 ENSMUSG00000036898 ENSMUST00000100524 Zfp157 protein_coding Interval_92782 chr2 65413760 65415305 + 0 NA Intergenic Intergenic -38250 ENSMUSG00000088197.1 ENSMUSG00000088197 ENSMUST00000157572 Gm24138 snoRNA Interval_119520 chr4 138107630 138108318 + 0 NA intron (ENSMUSG00000028760.16, intron 10 of 12) protein_coding-intron (ENSMUSG00000028760.16, intron 9 of 9) 30544 ENSMUSG00000084804.1 ENSMUSG00000084804 ENSMUST00000124620 1700095J12Rik antisense Interval_72725 chr17 31773190 31774075 + 0 NA Intergenic Intergenic -15894 ENSMUSG00000117355.1 ENSMUSG00000117355 ENSMUST00000234824 Gm49999 lincRNA Interval_113316 chr4 53426881 53427996 + 0 NA Intergenic Intergenic -13233 ENSMUSG00000028412.17 ENSMUSG00000028412 ENSMUST00000133582 Slc44a1 protein_coding Interval_131651 chr5 139072413 139072746 + 0 NA intron (ENSMUSG00000025855.13, intron 3 of 6) protein_coding-intron (ENSMUSG00000025855.13, intron 4 of 10) 77422 ENSMUSG00000025855.13 ENSMUSG00000025855 ENSMUST00000130180 Prkar1b protein_coding Interval_119549 chr4 138318342 138319996 + 0 NA intron (ENSMUSG00000028756.12, intron 4 of 8) protein_coding-intron (ENSMUSG00000028756.12, intron 3 of 7) -2969 ENSMUSG00000099200.1 ENSMUSG00000099200 ENSMUST00000183998 Mir7019 miRNA Interval_142146 chr6 137617388 137617635 + 0 NA intron (ENSMUSG00000015766.14, intron 1 of 4) protein_coding-intron (ENSMUSG00000015766.14, intron 1 of 21) -23936 ENSMUSG00000107878.1 ENSMUSG00000107878 ENSMUST00000203153 Gm44106 TEC Interval_169539 chr9 98976157 98977291 + 0 NA Intergenic Intergenic -9677 ENSMUSG00000032463.10 ENSMUSG00000032463 ENSMUST00000185472 Faim protein_coding Interval_62471 chr15 93254853 93255954 + 0 NA intron (ENSMUSG00000036197.16, intron 3 of 6) protein_coding-intron (ENSMUSG00000036197.16, intron 3 of 7) 19776 ENSMUSG00000036197.16 ENSMUSG00000036197 ENSMUST00000057896 Gxylt1 protein_coding Interval_13336 chr10 15498502 15499289 + 0 NA Intergenic Intergenic 22509 ENSMUSG00000112395.1 ENSMUSG00000112395 ENSMUST00000219635 Gm7198 processed_pseudogene Interval_39831 chr12 98816615 98816839 + 0 NA intron (ENSMUSG00000051166.10, intron 30 of 43) protein_coding-intron (ENSMUSG00000051166.10, intron 28 of 40) -3528 ENSMUSG00000113020.1 ENSMUSG00000113020 ENSMUST00000222872 Gm48063 TEC Interval_60876 chr15 77306122 77307415 + 0 NA promoter-TSS (ENSMUSG00000033565.18) protein_coding-promoter-TSS (ENSMUSG00000033565.18) 59931 ENSMUSG00000116413.1 ENSMUSG00000116413 ENSMUST00000230034 Gm49436 TEC Interval_174783 chrX 166535482 166535657 + 0 NA intron (ENSMUSG00000000402.2, intron 9 of 11) protein_coding-intron (ENSMUSG00000000402.2, intron 9 of 11) -32172 ENSMUSG00000051224.13 ENSMUSG00000051224 ENSMUST00000112187 Tceanc protein_coding Interval_149357 chr7 97665637 97665925 + 0 NA intron (ENSMUSG00000035623.14, intron 7 of 14) protein_coding-intron (ENSMUSG00000035623.14, intron 7 of 15) 8501 ENSMUSG00000035623.14 ENSMUSG00000035623 ENSMUST00000135270 Rsf1 protein_coding Interval_125213 chr5 65400515 65400804 + 0 NA TTS (ENSMUSG00000029199.11) protein_coding-TTS (ENSMUSG00000029199.11) -5092 ENSMUSG00000106291.1 ENSMUSG00000106291 ENSMUST00000199441 1110003F10Rik TEC Interval_133526 chr6 6152719 6154059 + 0 NA intron (ENSMUSG00000015112.15, intron 3 of 17) protein_coding-intron (ENSMUSG00000015112.15, intron 3 of 17) 20562 ENSMUSG00000015112.15 ENSMUSG00000015112 ENSMUST00000177698 Slc25a13 protein_coding Interval_37530 chr12 69612450 69613261 + 0 NA intron (ENSMUSG00000034801.13, intron 12 of 22) protein_coding-intron (ENSMUSG00000034801.13, intron 12 of 22) 4264 ENSMUSG00000034801.13 ENSMUSG00000034801 ENSMUST00000183306 Sos2 protein_coding Interval_96300 chr2 121388641 121389355 + 0 NA Intergenic Intergenic 12393 ENSMUSG00000082651.1 ENSMUSG00000082651 ENSMUST00000118847 Gm14001 processed_pseudogene Interval_138381 chr6 87762469 87762912 + 0 NA Intergenic Intergenic 3514 ENSMUSG00000068262.4 ENSMUSG00000068262 ENSMUST00000089501 Gm5879 processed_pseudogene Interval_2706 chr1 43635522 43637409 + 0 NA Intergenic Intergenic 76192 ENSMUSG00000103945.1 ENSMUSG00000103945 ENSMUST00000193169 Gm38228 TEC Interval_34269 chr11 121847594 121848392 + 0 NA Intergenic Intergenic -8780 ENSMUSG00000084401.1 ENSMUSG00000084401 ENSMUST00000117328 Gm12586 unprocessed_pseudogene Interval_75953 chr17 73709152 73710872 + 0 NA promoter-TSS (ENSMUSG00000024064.14) protein_coding-promoter-TSS (ENSMUSG00000024064.14) 54 ENSMUSG00000024064.14 ENSMUSG00000024064 ENSMUST00000146565 Galnt14 protein_coding Interval_44576 chr13 46310790 46312160 + 0 NA Intergenic Intergenic 37754 ENSMUSG00000063529.3 ENSMUSG00000063529 ENSMUST00000076622 Stmnd1 protein_coding Interval_155310 chr8 31143844 31144531 + 0 NA Intergenic Intergenic 5780 ENSMUSG00000088252.1 ENSMUSG00000088252 ENSMUST00000157627 Snord13 snoRNA Interval_13792 chr10 22499917 22500419 + 0 NA Intergenic Intergenic -46648 ENSMUSG00000097473.1 ENSMUSG00000097473 ENSMUST00000180890 Gm26585 processed_pseudogene Interval_165983 chr9 55201698 55202009 + 0 NA intron (ENSMUSG00000032307.16, intron 1 of 2) protein_coding-intron (ENSMUSG00000032307.16, intron 11 of 12) 7008 ENSMUSG00000032307.16 ENSMUSG00000032307 ENSMUST00000148468 Ube2q2 protein_coding Interval_130768 chr5 130272068 130273003 + 0 NA intron (ENSMUSG00000056310.14, intron 6 of 8) protein_coding-intron (ENSMUSG00000056310.14, intron 6 of 15) 16916 ENSMUSG00000056310.14 ENSMUSG00000056310 ENSMUST00000147619 Tyw1 protein_coding Interval_19133 chr10 94953139 94954467 + 0 NA Intergenic Intergenic 5213 ENSMUSG00000089146.1 ENSMUSG00000089146 ENSMUST00000158521 Gm25266 misc_RNA Interval_93514 chr2 73721826 73722411 + 0 NA promoter-TSS (ENSMUSG00000056486.18) protein_coding-promoter-TSS (ENSMUSG00000056486.18) 63848 ENSMUSG00000085838.1 ENSMUSG00000085838 ENSMUST00000123613 Chn1os1 antisense Interval_12071 chr1 189517188 189517449 + 0 NA Intergenic Intergenic 122916 ENSMUSG00000103087.1 ENSMUSG00000103087 ENSMUST00000192679 Gm38122 TEC Interval_116089 chr4 107556580 107556827 + 0 NA intron (ENSMUSG00000034762.9, intron 1 of 9) protein_coding-intron (ENSMUSG00000034762.9, intron 2 of 10) -24500 ENSMUSG00000034762.9 ENSMUSG00000034762 ENSMUST00000125573 Glis1 protein_coding Interval_83638 chr19 3373800 3374533 + 0 NA promoter-TSS (ENSMUSG00000024900.5) protein_coding-promoter-TSS (ENSMUSG00000024900.5) -2178 ENSMUSG00000024900.5 ENSMUSG00000024900 ENSMUST00000238027 Cpt1a protein_coding Interval_128513 chr5 113747731 113748042 + 0 NA intron (ENSMUSG00000018974.7, intron 13 of 16) protein_coding-intron (ENSMUSG00000018974.7, intron 14 of 18) 6871 ENSMUSG00000018974.7 ENSMUSG00000018974 ENSMUST00000196778 Sart3 protein_coding Interval_50232 chr14 10780378 10780626 + 0 NA promoter-TSS (ENSMUSG00000114305.1) TEC-promoter-TSS (ENSMUSG00000114305.1) -54 ENSMUSG00000114305.1 ENSMUSG00000114305 ENSMUST00000225136 Gm48437 TEC Interval_54117 chr14 65469451 65469895 + 0 NA Intergenic Intergenic -44513 ENSMUSG00000045731.6 ENSMUSG00000045731 ENSMUST00000224594 Pnoc protein_coding Interval_33307 chr11 115832704 115833449 + 0 NA promoter-TSS (ENSMUSG00000020782.18) protein_coding-promoter-TSS (ENSMUSG00000020782.18) 9018 ENSMUSG00000020782.18 ENSMUSG00000020782 ENSMUST00000132999 Llgl2 protein_coding Interval_11988 chr1 188475593 188475836 + 0 NA intron (ENSMUSG00000026609.15, intron 20 of 70) protein_coding-intron (ENSMUSG00000026609.15, intron 20 of 70) 147339 ENSMUSG00000077235.1 ENSMUSG00000077235 ENSMUST00000104047 Gm25095 snoRNA Interval_114278 chr4 70449668 70449893 + 0 NA intron (ENSMUSG00000039270.9, intron 3 of 5) protein_coding-intron (ENSMUSG00000039270.9, intron 3 of 5) -36857 ENSMUSG00000088367.1 ENSMUSG00000088367 ENSMUST00000157742 Gm26320 misc_RNA Interval_160606 chr8 111008360 111009526 + 0 NA intron (ENSMUSG00000033658.16, intron 10 of 11) protein_coding-intron (ENSMUSG00000033658.16, intron 10 of 11) 7587 ENSMUSG00000093087.1 ENSMUSG00000093087 ENSMUST00000175346 Mir3473d miRNA Interval_78359 chr18 12168008 12169278 + 0 NA promoter-TSS (ENSMUSG00000024410.15) protein_coding-promoter-TSS (ENSMUSG00000024410.15) 5205 ENSMUSG00000084748.1 ENSMUSG00000084748 ENSMUST00000122799 Gm25289 snRNA Interval_123593 chr5 33674158 33676746 + 0 NA intron (ENSMUSG00000037313.16, intron 15 of 15) protein_coding-intron (ENSMUSG00000037313.16, intron 15 of 15) 7522 ENSMUSG00000106971.1 ENSMUSG00000106971 ENSMUST00000201254 Gm42965 processed_pseudogene Interval_27144 chr11 63299687 63300500 + 0 NA Intergenic Intergenic 13218 ENSMUSG00000081600.3 ENSMUSG00000081600 ENSMUST00000119246 Gm12286 processed_pseudogene Interval_101890 chr3 10400017 10401322 + 0 NA intron (ENSMUSG00000027536.6, intron 1 of 4) protein_coding-intron (ENSMUSG00000027536.6, intron 1 of 4) 33711 ENSMUSG00000027536.6 ENSMUSG00000027536 ENSMUST00000191826 Chmp4c protein_coding Interval_136973 chr6 65155522 65155774 + 0 NA Intergenic Intergenic 4651 ENSMUSG00000107968.1 ENSMUSG00000107968 ENSMUST00000203338 Gm44419 processed_pseudogene Interval_59498 chr15 54620030 54620336 + 0 NA Intergenic Intergenic 48991 ENSMUSG00000024479.3 ENSMUSG00000024479 ENSMUST00000025356 Mal2 protein_coding Interval_1674 chr1 30937109 30939019 + 0 NA Intergenic Intergenic 11245 ENSMUSG00000026064.16 ENSMUSG00000026064 ENSMUST00000130934 Ptp4a1 protein_coding Interval_77181 chr17 87150675 87151549 + 0 NA Intergenic Intergenic 33113 ENSMUSG00000095035.1 ENSMUSG00000095035 ENSMUST00000116918 Gm22346 miRNA Interval_6881 chr1 120331830 120332592 + 0 NA Intergenic Intergenic -8371 ENSMUSG00000036907.9 ENSMUSG00000036907 ENSMUST00000037286 C1ql2 protein_coding Interval_40516 chr12 105427194 105427822 + 0 NA Intergenic Intergenic -22890 ENSMUSG00000113314.1 ENSMUSG00000113314 ENSMUST00000222652 Gm2721 lincRNA Interval_127796 chr5 107889556 107889740 + 0 NA Intergenic Intergenic -11226 ENSMUSG00000058558.12 ENSMUSG00000058558 ENSMUST00000151767 Rpl5 protein_coding Interval_104136 chr3 58956468 58957877 + 0 NA Intergenic Intergenic -18458 ENSMUSG00000087815.1 ENSMUSG00000087815 ENSMUST00000157190 Gm22491 snRNA Interval_59510 chr15 54799543 54799793 + 0 NA Intergenic Intergenic -34155 ENSMUSG00000098237.1 ENSMUSG00000098237 ENSMUST00000182543 Gm7577 processed_pseudogene Interval_171679 chr9 120115550 120116769 + 0 NA intron (ENSMUSG00000032519.11, intron 1 of 4) protein_coding-intron (ENSMUSG00000032519.11, intron 1 of 6) 1170 ENSMUSG00000032519.11 ENSMUSG00000032519 ENSMUST00000154969 Slc25a38 protein_coding Interval_11535 chr1 182516786 182518364 + 0 NA promoter-TSS (ENSMUSG00000026509.15) protein_coding-promoter-TSS (ENSMUSG00000026509.15) 23419 ENSMUSG00000104415.1 ENSMUSG00000104415 ENSMUST00000192742 Gm37069 TEC Interval_171246 chr9 115586352 115587063 + 0 NA Intergenic Intergenic 40011 ENSMUSG00000094630.1 ENSMUSG00000094630 ENSMUST00000082810 n-R5s92 rRNA Interval_119201 chr4 136163493 136164133 + 0 NA Intergenic Intergenic -16970 ENSMUSG00000018983.9 ENSMUSG00000018983 ENSMUST00000149750 E2f2 protein_coding Interval_91765 chr2 49374493 49375549 + 0 NA Intergenic Intergenic 23494 ENSMUSG00000077769.1 ENSMUSG00000077769 ENSMUST00000104581 Gm25215 snoRNA Interval_40797 chr12 108480651 108481988 + 0 NA intron (ENSMUSG00000058070.14, intron 1 of 18) protein_coding-intron (ENSMUSG00000058070.14, intron 3 of 21) 9466 ENSMUSG00000058070.14 ENSMUSG00000058070 ENSMUST00000123035 Eml1 protein_coding Interval_30520 chr11 94910801 94912984 + 0 NA Intergenic Intergenic -7817 ENSMUSG00000064512.1 ENSMUSG00000064512 ENSMUST00000082578 Gm22456 snRNA Interval_83786 chr19 4719275 4719755 + 0 NA intron (ENSMUSG00000067889.6, intron 2 of 4) protein_coding-intron (ENSMUSG00000067889.6, intron 2 of 36) -1564 ENSMUSG00000067889.6 ENSMUSG00000067889 ENSMUST00000238162 Sptbn2 protein_coding Interval_102397 chr3 23547462 23547830 + 0 NA Intergenic Intergenic 86596 ENSMUSG00000102203.1 ENSMUSG00000102203 ENSMUST00000194267 4930412E21Rik lincRNA Interval_56914 chr14 123195909 123196445 + 0 NA intron (ENSMUSG00000115016.1, intron 4 of 4) processed_transcript-intron (ENSMUSG00000115016.1, intron 4 of 4) -30692 ENSMUSG00000115758.1 ENSMUSG00000115758 ENSMUST00000226283 Gm49294 processed_pseudogene Interval_152800 chr7 137771276 137771650 + 0 NA Intergenic Intergenic 37197 ENSMUSG00000110090.1 ENSMUSG00000110090 ENSMUST00000209434 Gm45682 lincRNA Interval_156900 chr8 61555121 61555633 + 0 NA intron (ENSMUSG00000058056.16, intron 10 of 21) protein_coding-intron (ENSMUSG00000058056.16, intron 10 of 19) -39477 ENSMUSG00000058056.16 ENSMUSG00000058056 ENSMUST00000123523 Palld protein_coding Interval_2788 chr1 45070892 45071145 + 0 NA Intergenic Intergenic -107049 ENSMUSG00000101937.1 ENSMUSG00000101937 ENSMUST00000189212 Gm5268 processed_pseudogene Interval_159489 chr8 95037017 95037512 + 0 NA intron (ENSMUSG00000060470.7, intron 6 of 9) protein_coding-intron (ENSMUSG00000060470.7, intron 8 of 11) -8717 ENSMUSG00000110426.1 ENSMUSG00000110426 ENSMUST00000211835 Gm45757 TEC Interval_10010 chr1 164999310 165000564 + 0 NA Intergenic Intergenic -24408 ENSMUSG00000080561.1 ENSMUSG00000080561 ENSMUST00000116911 Gm26042 miRNA Interval_42541 chr13 14965849 14966041 + 0 NA Intergenic Intergenic 22801 ENSMUSG00000114176.1 ENSMUSG00000114176 ENSMUST00000221755 Gm48329 processed_pseudogene Interval_117732 chr4 125900904 125901164 + 0 NA intron (ENSMUSG00000085562.7, intron 2 of 5) lincRNA-intron (ENSMUSG00000085562.7, intron 2 of 5) 21383 ENSMUSG00000085562.7 ENSMUSG00000085562 ENSMUST00000144539 2610028E06Rik lincRNA Interval_102926 chr3 32849046 32849425 + 0 NA intron (ENSMUSG00000056900.13, intron 3 of 14) protein_coding-intron (ENSMUSG00000056900.13, intron 3 of 20) 31373 ENSMUSG00000081883.2 ENSMUSG00000081883 ENSMUST00000119937 Gm15574 processed_pseudogene Interval_5934 chr1 93311680 93312306 + 0 NA promoter-TSS (ENSMUSG00000026274.11) protein_coding-promoter-TSS (ENSMUSG00000026274.11) -649 ENSMUSG00000026274.11 ENSMUSG00000026274 ENSMUST00000128253 Pask protein_coding Interval_151989 chr7 127983278 127984313 + 0 NA exon (ENSMUSG00000030795.18, exon 1 of 1) protein_coding-exon (ENSMUSG00000030795.18, exon 1 of 1) 5663 ENSMUSG00000030795.18 ENSMUSG00000030795 ENSMUST00000079045 Fus protein_coding Interval_138861 chr6 92734325 92734593 + 0 NA Intergenic Intergenic -93173 ENSMUSG00000048636.7 ENSMUSG00000048636 ENSMUST00000133858 A730049H05Rik protein_coding Interval_21672 chr11 3607784 3608626 + 0 NA Intergenic Intergenic 17643 ENSMUSG00000084211.1 ENSMUSG00000084211 ENSMUST00000117640 Gm11949 processed_pseudogene Interval_56414 chr14 118610912 118611944 + 0 NA intron (ENSMUSG00000032849.14, intron 12 of 29) protein_coding-intron (ENSMUSG00000032849.14, intron 13 of 30) -18956 ENSMUSG00000098433.1 ENSMUSG00000098433 ENSMUST00000184391 Mir6391 miRNA Interval_10054 chr1 165403966 165404814 + 0 NA intron (ENSMUSG00000026571.12, intron 6 of 11) protein_coding-intron (ENSMUSG00000026571.12, intron 6 of 18) 24871 ENSMUSG00000104427.1 ENSMUSG00000104427 ENSMUST00000193181 Gm38368 TEC Interval_89424 chr2 20606381 20606574 + 0 NA intron (ENSMUSG00000036617.17, intron 1 of 2) protein_coding-intron (ENSMUSG00000036617.17, intron 3 of 18) 46673 ENSMUSG00000098575.1 ENSMUSG00000098575 ENSMUST00000183963 Gm27446 misc_RNA Interval_20041 chr10 112450956 112451303 + 0 NA intron (ENSMUSG00000035681.7, intron 2 of 4) protein_coding-intron (ENSMUSG00000035681.7, intron 2 of 4) -5127 ENSMUSG00000035681.7 ENSMUSG00000035681 ENSMUST00000218827 Kcnc2 protein_coding Interval_69063 chr16 90385363 90387547 + 0 NA exon (ENSMUSG00000053414.8, exon 1 of 11) protein_coding-exon (ENSMUSG00000053414.8, exon 1 of 11) -14089 ENSMUSG00000053414.8 ENSMUSG00000053414 ENSMUST00000231603 Hunk protein_coding Interval_111878 chr4 32202223 32202507 + 0 NA Intergenic Intergenic -4783 ENSMUSG00000083564.1 ENSMUSG00000083564 ENSMUST00000118175 Gm11929 processed_pseudogene Interval_128815 chr5 115429237 115431293 + 0 NA promoter-TSS (ENSMUSG00000054256.11) protein_coding-promoter-TSS (ENSMUSG00000054256.11) 566 ENSMUSG00000054256.11 ENSMUSG00000054256 ENSMUST00000130849 Msi1 protein_coding Interval_140862 chr6 122439165 122439515 + 0 NA Intergenic Intergenic -17564 ENSMUSG00000055093.10 ENSMUSG00000055093 ENSMUST00000119780 Gm8430 processed_pseudogene Interval_117355 chr4 123200473 123202659 + 0 NA promoter-TSS (ENSMUSG00000054958.6) protein_coding-promoter-TSS (ENSMUSG00000054958.6) 62 ENSMUSG00000054958.6 ENSMUSG00000054958 ENSMUST00000068262 Nt5c1a protein_coding Interval_17390 chr10 76285713 76286879 + 0 NA promoter-TSS (ENSMUSG00000020231.15) protein_coding-promoter-TSS (ENSMUSG00000020231.15) -6869 ENSMUSG00000089711.1 ENSMUSG00000089711 ENSMUST00000161924 Gm16240 antisense Interval_47995 chr13 94937774 94939613 + 0 NA Intergenic Intergenic 56093 ENSMUSG00000021685.11 ENSMUSG00000021685 ENSMUST00000184985 Otp protein_coding Interval_91925 chr2 51542387 51542832 + 0 NA Intergenic Intergenic -2366 ENSMUSG00000084334.1 ENSMUSG00000084334 ENSMUST00000120828 Gm13494 processed_pseudogene Interval_154158 chr8 13131916 13132473 + 0 NA intron (ENSMUSG00000031446.14, intron 5 of 15) protein_coding-intron (ENSMUSG00000031446.14, intron 9 of 19) -3878 ENSMUSG00000098532.1 ENSMUSG00000098532 ENSMUST00000185110 Mir7065 miRNA Interval_97571 chr2 139990145 139990347 + 0 NA intron (ENSMUSG00000039033.11, intron 3 of 4) protein_coding-intron (ENSMUSG00000039033.11, intron 6 of 13) 51968 ENSMUSG00000039033.11 ENSMUSG00000039033 ENSMUST00000124949 Tasp1 protein_coding Interval_149293 chr7 97064241 97064500 + 0 NA exon (ENSMUSG00000018995.12, exon 14 of 14) protein_coding-exon (ENSMUSG00000018995.12, exon 14 of 14) -17406 ENSMUSG00000004508.6 ENSMUSG00000004508 ENSMUST00000206791 Gab2 protein_coding Interval_74305 chr17 48700500 48701273 + 0 NA Intergenic Intergenic -8179 ENSMUSG00000088483.1 ENSMUSG00000088483 ENSMUST00000157858 Gm23642 misc_RNA Interval_49420 chr13 111852458 111852695 + 0 NA promoter-TSS (ENSMUSG00000086861.1) lincRNA-promoter-TSS (ENSMUSG00000086861.1) 46 ENSMUSG00000086861.1 ENSMUSG00000086861 ENSMUST00000149661 Gm15325 lincRNA Interval_76348 chr17 79337202 79337423 + 0 NA intron (ENSMUSG00000036533.9, intron 1 of 1) protein_coding-intron (ENSMUSG00000036533.9, intron 1 of 1) 15695 ENSMUSG00000036533.9 ENSMUSG00000036533 ENSMUST00000233363 Cdc42ep3 protein_coding Interval_8894 chr1 151873017 151873278 + 0 NA intron (ENSMUSG00000032666.16, intron 6 of 6) protein_coding-intron (ENSMUSG00000032666.16, intron 6 of 6) -2272 ENSMUSG00000100685.1 ENSMUSG00000100685 ENSMUST00000187716 Gm28610 antisense Interval_129059 chr5 117132022 117132364 + 0 NA exon (ENSMUSG00000107225.1, exon 1 of 1) TEC-exon (ENSMUSG00000107225.1, exon 1 of 1) -1395 ENSMUSG00000061288.13 ENSMUSG00000061288 ENSMUST00000111975 Taok3 protein_coding Interval_133571 chr6 6890199 6890869 + 0 NA Intergenic Intergenic -8452 ENSMUSG00000029755.10 ENSMUSG00000029755 ENSMUST00000204014 Dlx5 protein_coding Interval_128891 chr5 115922106 115922467 + 0 NA intron (ENSMUSG00000029516.19, intron 10 of 10) protein_coding-intron (ENSMUSG00000029516.19, intron 9 of 46) 19856 ENSMUSG00000107263.1 ENSMUSG00000107263 ENSMUST00000201457 Gm42471 TEC Interval_139719 chr6 108081288 108084338 + 0 NA Intergenic Intergenic 17751 ENSMUSG00000034639.7 ENSMUSG00000034639 ENSMUST00000138140 Setmar protein_coding Interval_78789 chr18 20639863 20641405 + 0 NA intron (ENSMUSG00000085595.1, intron 1 of 2) antisense-intron (ENSMUSG00000085595.1, intron 1 of 2) 24626 ENSMUSG00000085595.1 ENSMUSG00000085595 ENSMUST00000130296 Gm16090 antisense Interval_42442 chr13 13589845 13591072 + 0 NA promoter-TSS (ENSMUSG00000019726.12) protein_coding-promoter-TSS (ENSMUSG00000019726.12) 75720 ENSMUSG00000114068.1 ENSMUSG00000114068 ENSMUST00000221249 Gm48783 TEC Interval_140217 chr6 115619499 115619827 + 0 NA TTS (ENSMUSG00000000441.17) protein_coding-TTS (ENSMUSG00000000441.17) 7404 ENSMUSG00000000441.17 ENSMUSG00000000441 ENSMUST00000127503 Raf1 protein_coding Interval_170666 chr9 109967989 109968315 + 0 NA promoter-TSS (ENSMUSG00000032479.15) protein_coding-promoter-TSS (ENSMUSG00000032479.15) -2281 ENSMUSG00000106208.1 ENSMUSG00000106208 ENSMUST00000200117 Gm4734 processed_pseudogene Interval_68655 chr16 83649995 83650385 + 0 NA Intergenic Intergenic 84663 ENSMUSG00000116533.1 ENSMUSG00000116533 ENSMUST00000232058 Gm49561 processed_pseudogene Interval_44539 chr13 45907620 45908089 + 0 NA intron (ENSMUSG00000046876.16, intron 1 of 2) protein_coding-intron (ENSMUSG00000046876.16, intron 2 of 7) -28186 ENSMUSG00000113987.1 ENSMUSG00000113987 ENSMUST00000222376 4930453C13Rik antisense Interval_66186 chr16 32204793 32205335 + 0 NA Intergenic Intergenic 25241 ENSMUSG00000075269.5 ENSMUSG00000075269 ENSMUST00000099990 Bex6 protein_coding Interval_169257 chr9 95913973 95914190 + 0 NA promoter-TSS (ENSMUSG00000032409.15) protein_coding-promoter-TSS (ENSMUSG00000032409.15) -20532 ENSMUSG00000089085.1 ENSMUSG00000089085 ENSMUST00000158460 Gm24004 snRNA Interval_111423 chr4 21522560 21522844 + 0 NA Intergenic Intergenic -103678 ENSMUSG00000083654.1 ENSMUSG00000083654 ENSMUST00000118187 Gm11875 processed_pseudogene Interval_150497 chr7 111210280 111210524 + 0 NA Intergenic Intergenic -87718 ENSMUSG00000110424.1 ENSMUSG00000110424 ENSMUST00000210340 1700012D14Rik processed_transcript Interval_172902 chrX 53050258 53050622 + 0 NA promoter-TSS (ENSMUSG00000076140.1) miRNA-promoter-TSS (ENSMUSG00000076140.1) -953 ENSMUSG00000076140.1 ENSMUSG00000076140 ENSMUST00000102186 Mir542 miRNA Interval_82254 chr18 69675325 69675973 + 0 NA TTS (ENSMUSG00000053477.17) protein_coding-TTS (ENSMUSG00000053477.17) 102396 ENSMUSG00000064706.1 ENSMUSG00000064706 ENSMUST00000082772 Gm22508 misc_RNA Interval_104919 chr3 79008329 79008832 + 0 NA Intergenic Intergenic 28658 ENSMUSG00000077487.1 ENSMUSG00000077487 ENSMUST00000104299 Gm23440 snoRNA Interval_17375 chr10 76187313 76187877 + 0 NA intron (ENSMUSG00000020229.4, intron 14 of 14) protein_coding-intron (ENSMUSG00000020229.4, intron 14 of 14) 11386 ENSMUSG00000112625.1 ENSMUSG00000112625 ENSMUST00000218019 Gm2628 processed_pseudogene Interval_154210 chr8 13461736 13462410 + 0 NA TTS (ENSMUSG00000038457.17) protein_coding-TTS (ENSMUSG00000038457.17) 26884 ENSMUSG00000038457.17 ENSMUSG00000038457 ENSMUST00000209950 Tmem255b protein_coding Interval_46315 chr13 63863307 63863888 + 0 NA intron (ENSMUSG00000021470.19, intron 12 of 18) protein_coding-intron (ENSMUSG00000021470.19, intron 12 of 13) 2515 ENSMUSG00000114095.1 ENSMUSG00000114095 ENSMUST00000221964 Gm47424 sense_intronic Interval_90073 chr2 27731841 27732064 + 0 NA intron (ENSMUSG00000015846.15, intron 1 of 9) protein_coding-intron (ENSMUSG00000015846.15, intron 1 of 9) 6733 ENSMUSG00000015846.15 ENSMUSG00000015846 ENSMUST00000148756 Rxra protein_coding Interval_162168 chr8 125669704 125670461 + 0 NA exon (ENSMUSG00000050930.5, exon 1 of 1) protein_coding-exon (ENSMUSG00000050930.5, exon 1 of 1) 264 ENSMUSG00000050930.5 ENSMUSG00000050930 ENSMUST00000053078 Map10 protein_coding Interval_161625 chr8 121639701 121639903 + 0 NA intron (ENSMUSG00000061410.6, intron 1 of 12) protein_coding-intron (ENSMUSG00000061410.6, intron 1 of 12) -14252 ENSMUSG00000098221.1 ENSMUSG00000098221 ENSMUST00000182551 Gm27030 lincRNA Interval_25789 chr11 51728964 51729396 + 0 NA exon (ENSMUSG00000036391.16, exon 8 of 8) protein_coding-exon (ENSMUSG00000036391.16, exon 8 of 8) 8742 ENSMUSG00000084744.1 ENSMUSG00000084744 ENSMUST00000122795 Gm25291 snoRNA Interval_8718 chr1 149897169 149897562 + 0 NA intron (ENSMUSG00000056220.14, intron 4 of 5) protein_coding-intron (ENSMUSG00000056220.14, intron 5 of 17) 55835 ENSMUSG00000077516.1 ENSMUSG00000077516 ENSMUST00000104328 n-R5s219 rRNA Interval_23644 chr11 24052965 24053257 + 0 NA intron (ENSMUSG00000055010.1, intron 2 of 2) protein_coding-intron (ENSMUSG00000055010.1, intron 2 of 2) 21943 ENSMUSG00000055010.1 ENSMUSG00000055010 ENSMUST00000068360 A830031A19Rik protein_coding Interval_77386 chr17 88361687 88363099 + 0 NA intron (ENSMUSG00000117351.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000117351.1, intron 1 of 1) -19911 ENSMUSG00000088791.1 ENSMUSG00000088791 ENSMUST00000158166 Gm22542 snRNA Interval_10934 chr1 177208142 177208424 + 0 NA intron (ENSMUSG00000019699.16, intron 1 of 12) protein_coding-intron (ENSMUSG00000019699.16, intron 1 of 12) 22403 ENSMUSG00000102427.1 ENSMUSG00000102427 ENSMUST00000193819 Gm37463 TEC Interval_66175 chr16 32135625 32136331 + 0 NA Intergenic Intergenic 27113 ENSMUSG00000086146.1 ENSMUSG00000086146 ENSMUST00000125829 Gm15729 lincRNA Interval_167503 chr9 70107297 70108531 + 0 NA intron (ENSMUSG00000032224.15, intron 4 of 8) protein_coding-intron (ENSMUSG00000032224.15, intron 4 of 8) -4838 ENSMUSG00000032224.15 ENSMUSG00000032224 ENSMUST00000141775 Fam81a protein_coding Interval_60683 chr15 76138434 76138846 + 0 NA Intergenic Intergenic -11728 ENSMUSG00000116475.1 ENSMUSG00000116475 ENSMUST00000229700 Gm19945 processed_pseudogene Interval_129964 chr5 123350088 123350856 + 0 NA intron (ENSMUSG00000029438.9, intron 3 of 7) protein_coding-intron (ENSMUSG00000029438.9, intron 1 of 5) -6137 ENSMUSG00000087336.2 ENSMUSG00000087336 ENSMUST00000137257 Gm15860 antisense Interval_150132 chr7 107220096 107220431 + 0 NA Intergenic Intergenic 10818 ENSMUSG00000073894.1 ENSMUSG00000073894 ENSMUST00000098135 Rbmxl2 protein_coding Interval_134605 chr6 29889338 29889560 + 0 NA intron (ENSMUSG00000029772.17, intron 6 of 14) protein_coding-intron (ENSMUSG00000029772.17, intron 8 of 16) 12770 ENSMUSG00000029772.17 ENSMUSG00000029772 ENSMUST00000128837 Ahcyl2 protein_coding Interval_58025 chr15 26469834 26470361 + 0 NA Intergenic Intergenic 82378 ENSMUSG00000022269.13 ENSMUSG00000022269 ENSMUST00000155819 Marchf11 protein_coding Interval_122243 chr5 20628889 20629999 + 0 NA intron (ENSMUSG00000040003.18, intron 15 of 15) protein_coding-intron (ENSMUSG00000040003.18, intron 20 of 22) 40848 ENSMUSG00000106240.1 ENSMUSG00000106240 ENSMUST00000196129 Gm3544 processed_pseudogene Interval_138012 chr6 84133209 84133478 + 0 NA intron (ENSMUSG00000033788.15, intron 32 of 55) protein_coding-intron (ENSMUSG00000033788.15, intron 32 of 54) -26336 ENSMUSG00000087001.2 ENSMUSG00000087001 ENSMUST00000137673 Gm15475 antisense Interval_83654 chr19 3509006 3509683 + 0 NA intron (ENSMUSG00000024908.15, intron 7 of 12) protein_coding-intron (ENSMUSG00000024908.15, intron 7 of 22) -17760 ENSMUSG00000114302.1 ENSMUSG00000114302 ENSMUST00000223977 Gm48683 antisense Interval_139984 chr6 113193708 113196017 + 0 NA promoter-TSS (ENSMUSG00000042873.11) protein_coding-promoter-TSS (ENSMUSG00000042873.11) -919 ENSMUSG00000042873.11 ENSMUSG00000042873 ENSMUST00000203665 Lhfpl4 protein_coding Interval_127799 chr5 107906961 107907657 + 0 NA promoter-TSS (ENSMUSG00000077426.1) snoRNA-promoter-TSS (ENSMUSG00000077426.1) -36 ENSMUSG00000077426.1 ENSMUSG00000077426 ENSMUST00000104238 Gm26387 snoRNA Interval_9144 chr1 154032514 154033127 + 0 NA intron (ENSMUSG00000100502.1, intron 2 of 2) lincRNA-intron (ENSMUSG00000100502.1, intron 2 of 2) 1481 ENSMUSG00000100502.1 ENSMUSG00000100502 ENSMUST00000188704 Gm28286 lincRNA Interval_136433 chr6 54407914 54408624 + 0 NA intron (ENSMUSG00000073067.10, intron 1 of 13) processed_transcript-intron (ENSMUSG00000073067.10, intron 1 of 13) -44614 ENSMUSG00000086040.8 ENSMUSG00000086040 ENSMUST00000131043 Wipf3 protein_coding Interval_123138 chr5 30045018 30046427 + 0 NA Intergenic Intergenic 27854 ENSMUSG00000025747.12 ENSMUSG00000025747 ENSMUST00000138520 Tyms protein_coding Interval_165683 chr9 50904387 50904802 + 0 NA intron (ENSMUSG00000037112.16, intron 9 of 14) protein_coding-intron (ENSMUSG00000037112.16, intron 9 of 15) 16644 ENSMUSG00000088708.1 ENSMUSG00000088708 ENSMUST00000158083 Gm25558 snRNA Interval_158274 chr8 80760861 80762080 + 0 NA Intergenic Intergenic -9221 ENSMUSG00000109584.1 ENSMUSG00000109584 ENSMUST00000210546 Gm7997 processed_pseudogene Interval_153631 chr8 4130087 4130392 + 0 NA Intergenic Intergenic -3859 ENSMUSG00000079168.4 ENSMUSG00000079168 ENSMUST00000130372 Cd209g protein_coding Interval_75400 chr17 66357949 66358399 + 0 NA exon (ENSMUSG00000052105.17, exon 9 of 14) protein_coding-exon (ENSMUSG00000052105.17, exon 9 of 14) -38662 ENSMUSG00000117010.1 ENSMUSG00000117010 ENSMUST00000233050 Gm49933 processed_pseudogene Interval_81696 chr18 63652645 63656097 + 0 NA Intergenic Intergenic 54423 ENSMUSG00000024583.3 ENSMUSG00000024583 ENSMUST00000236253 Txnl1 protein_coding Interval_110799 chr4 8510048 8511379 + 0 NA Intergenic Intergenic -24931 ENSMUSG00000047187.9 ENSMUSG00000047187 ENSMUST00000060232 Rab2a protein_coding Interval_142040 chr6 136698674 136698847 + 0 NA intron (ENSMUSG00000042638.14, intron 25 of 25) protein_coding-intron (ENSMUSG00000042638.14, intron 26 of 26) -3477 ENSMUSG00000107850.1 ENSMUSG00000107850 ENSMUST00000203395 Gm4714 processed_pseudogene Interval_49269 chr13 110005957 110006938 + 0 NA Intergenic Intergenic 102638 ENSMUSG00000084651.1 ENSMUSG00000084651 ENSMUST00000122702 Mir1904 miRNA Interval_33270 chr11 115577827 115578532 + 0 NA exon (ENSMUSG00000020739.11, exon 9 of 19) protein_coding-exon (ENSMUSG00000020739.11, exon 9 of 19) 8064 ENSMUSG00000020739.11 ENSMUSG00000020739 ENSMUST00000134209 Nup85 protein_coding Interval_60055 chr15 64282083 64282596 + 0 NA intron (ENSMUSG00000022377.16, intron 2 of 4) protein_coding-intron (ENSMUSG00000022377.16, intron 3 of 30) -32158 ENSMUSG00000115752.1 ENSMUSG00000115752 ENSMUST00000226773 1700010G06Rik antisense Interval_6802 chr1 119580871 119582009 + 0 NA intron (ENSMUSG00000026383.14, intron 2 of 7) protein_coding-intron (ENSMUSG00000026383.14, intron 16 of 24) 18865 ENSMUSG00000026383.14 ENSMUSG00000026383 ENSMUST00000187194 Epb41l5 protein_coding Interval_71847 chr17 26488832 26489096 + 0 NA intron (ENSMUSG00000118107.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000118107.1, intron 1 of 2) 1945 ENSMUSG00000118107.1 ENSMUSG00000118107 ENSMUST00000236309 Gm34455 lincRNA Interval_170805 chr9 110879700 110880860 + 0 NA promoter-TSS (ENSMUSG00000049555.10) protein_coding-promoter-TSS (ENSMUSG00000049555.10) -4259 ENSMUSG00000049555.10 ENSMUSG00000049555 ENSMUST00000199189 Tmie protein_coding Interval_135524 chr6 39950141 39950628 + 0 NA intron (ENSMUSG00000057716.7, intron 1 of 3) protein_coding-intron (ENSMUSG00000057716.7, intron 1 of 3) -76510 ENSMUSG00000103331.1 ENSMUSG00000103331 ENSMUST00000194958 Gm37995 TEC Interval_129332 chr5 119188312 119188786 + 0 NA Intergenic Intergenic 11469 ENSMUSG00000107334.1 ENSMUSG00000107334 ENSMUST00000200918 Gm7538 lincRNA Interval_173224 chrX 74392722 74393867 + 0 NA promoter-TSS (ENSMUSG00000031399.15) protein_coding-promoter-TSS (ENSMUSG00000031399.15) 3 ENSMUSG00000004221.16 ENSMUSG00000004221 ENSMUST00000143784 Ikbkg protein_coding Interval_73661 chr17 42530304 42530709 + 0 NA Intergenic Intergenic 80889 ENSMUSG00000043972.8 ENSMUSG00000043972 ENSMUST00000068355 Opn5 protein_coding Interval_147579 chr7 68480132 68481092 + 0 NA intron (ENSMUSG00000108828.1, intron 4 of 6) lincRNA-intron (ENSMUSG00000108828.1, intron 4 of 6) 41239 ENSMUSG00000109298.1 ENSMUSG00000109298 ENSMUST00000209009 Gm44886 lincRNA Interval_55310 chr14 82238342 82238838 + 0 NA Intergenic Intergenic -96012 ENSMUSG00000115825.1 ENSMUSG00000115825 ENSMUST00000228751 Gm49048 lincRNA Interval_20844 chr10 121460690 121462593 + 0 NA intron (ENSMUSG00000112009.1, intron 1 of 1) protein_coding-intron (ENSMUSG00000025795.8, intron 1 of 4) 572 ENSMUSG00000025795.8 ENSMUSG00000025795 ENSMUST00000219500 Rassf3 protein_coding Interval_128159 chr5 111378696 111379278 + 0 NA intron (ENSMUSG00000050017.11, intron 8 of 10) protein_coding-intron (ENSMUSG00000050017.11, intron 8 of 11) 9302 ENSMUSG00000104559.1 ENSMUSG00000104559 ENSMUST00000199149 Gm43118 antisense Interval_173429 chrX 93296766 93297627 + 0 NA exon (ENSMUSG00000035277.15, exon 5 of 5) protein_coding-exon (ENSMUSG00000035277.15, exon 5 of 5) 10751 ENSMUSG00000035277.15 ENSMUSG00000035277 ENSMUST00000113947 Arx protein_coding Interval_155632 chr8 35388315 35389244 + 0 NA TTS (ENSMUSG00000046794.9) protein_coding-TTS (ENSMUSG00000046794.9) -12387 ENSMUSG00000109698.1 ENSMUSG00000109698 ENSMUST00000210468 Gm45469 bidirectional_promoter_lncRNA Interval_67855 chr16 58076178 58076665 + 0 NA Intergenic Intergenic -70398 ENSMUSG00000116770.1 ENSMUSG00000116770 ENSMUST00000231442 Gm49576 lincRNA Interval_45768 chr13 57907583 57908839 + 0 NA promoter-TSS (ENSMUSG00000056222.15) protein_coding-promoter-TSS (ENSMUSG00000056222.15) 121 ENSMUSG00000056222.15 ENSMUSG00000056222 ENSMUST00000185905 Spock1 protein_coding Interval_25137 chr11 44469781 44471103 + 0 NA promoter-TSS (ENSMUSG00000041231.15) protein_coding-promoter-TSS (ENSMUSG00000041231.15) 1429 ENSMUSG00000092889.1 ENSMUSG00000092889 ENSMUST00000175148 Gm22121 miRNA Interval_129674 chr5 121651857 121652200 + 0 NA exon (ENSMUSG00000029456.12, exon 3 of 21) protein_coding-exon (ENSMUSG00000029456.12, exon 3 of 21) -19249 ENSMUSG00000029456.12 ENSMUSG00000029456 ENSMUST00000137231 Acad10 protein_coding Interval_41512 chr12 115604986 115605549 + 0 NA promoter-TSS (ENSMUSG00000095863.2) IG_V_gene-promoter-TSS (ENSMUSG00000095863.2) -891 ENSMUSG00000095863.2 ENSMUSG00000095863 ENSMUST00000198646 Ighv1-67 IG_V_gene Interval_97092 chr2 131174837 131175859 + 0 NA promoter-TSS (ENSMUSG00000027329.9) protein_coding-promoter-TSS (ENSMUSG00000027329.9) -695 ENSMUSG00000027329.9 ENSMUSG00000027329 ENSMUST00000127987 Spef1 protein_coding Interval_158393 chr8 83362681 83363494 + 0 NA intron (ENSMUSG00000035057.7, intron 3 of 8) protein_coding-intron (ENSMUSG00000035057.7, intron 6 of 10) 5061 ENSMUSG00000035057.7 ENSMUSG00000035057 ENSMUST00000139692 Mgat4d protein_coding Interval_159324 chr8 93546861 93547584 + 0 NA Intergenic Intergenic -11392 ENSMUSG00000058019.13 ENSMUSG00000058019 ENSMUST00000212722 Ces5a protein_coding Interval_110490 chr3 159549096 159550866 + 0 NA Intergenic Intergenic -49237 ENSMUSG00000028174.12 ENSMUSG00000028174 ENSMUST00000029824 Rpe65 protein_coding Interval_132994 chr5 149159913 149160242 + 0 NA intron (ENSMUSG00000097191.2, intron 2 of 3) lincRNA-intron (ENSMUSG00000097191.2, intron 2 of 3) -4058 ENSMUSG00000024437.6 ENSMUSG00000024437 ENSMUST00000025307 Gm8615 transcribed_processed_pseudogene Interval_18895 chr10 92817057 92818718 + 0 NA intron (ENSMUSG00000020014.17, intron 65 of 67) protein_coding-intron (ENSMUSG00000020014.17, intron 3 of 6) -94199 ENSMUSG00000111740.1 ENSMUSG00000111740 ENSMUST00000213901 Gm49783 TEC Interval_67684 chr16 55944087 55944585 + 0 NA Intergenic Intergenic -3625 ENSMUSG00000116653.1 ENSMUSG00000116653 ENSMUST00000231662 Gm8900 processed_pseudogene Interval_50635 chr14 16971064 16971961 + 0 NA Intergenic Intergenic 17906 ENSMUSG00000114202.1 ENSMUSG00000114202 ENSMUST00000224816 Gm18078 processed_pseudogene Interval_18033 chr10 81472048 81474680 + 0 NA promoter-TSS (ENSMUSG00000034818.17) protein_coding-promoter-TSS (ENSMUSG00000034818.17) 9340 ENSMUSG00000034818.17 ENSMUSG00000034818 ENSMUST00000147524 Celf5 protein_coding Interval_107107 chr3 103624998 103625275 + 0 NA intron (ENSMUSG00000027849.19, intron 4 of 4) protein_coding-intron (ENSMUSG00000027849.19, intron 4 of 7) 20932 ENSMUSG00000087119.4 ENSMUSG00000087119 ENSMUST00000117271 Atg4a-ps protein_coding Interval_89178 chr2 17871070 17871327 + 0 NA Intergenic Intergenic -73214 ENSMUSG00000081851.1 ENSMUSG00000081851 ENSMUST00000120245 Gm13323 processed_pseudogene Interval_162887 chr9 11435167 11436113 + 0 NA Intergenic Intergenic -91939 ENSMUSG00000110858.1 ENSMUSG00000110858 ENSMUST00000214279 Gm18160 unprocessed_pseudogene Interval_147732 chr7 73145057 73145682 + 0 NA Intergenic Intergenic 20918 ENSMUSG00000108345.1 ENSMUSG00000108345 ENSMUST00000205892 4933435G04Rik lincRNA Interval_81181 chr18 55938115 55938305 + 0 NA promoter-TSS (ENSMUSG00000118141.1) lincRNA-promoter-TSS (ENSMUSG00000118141.1) 57 ENSMUSG00000118141.1 ENSMUSG00000118141 ENSMUST00000235251 Gm4230 lincRNA Interval_49215 chr13 109539459 109539657 + 0 NA intron (ENSMUSG00000021699.17, intron 1 of 14) protein_coding-intron (ENSMUSG00000021699.17, intron 1 of 14) 214814 ENSMUSG00000076946.2 ENSMUSG00000076946 ENSMUST00000103758 Mir582 miRNA Interval_66745 chr16 36956834 36957006 + 0 NA TTS (ENSMUSG00000022831.14) protein_coding-TTS (ENSMUSG00000022831.14) 19633 ENSMUSG00000022831.14 ENSMUSG00000022831 ENSMUST00000163755 Hcls1 protein_coding Interval_72908 chr17 33278292 33279471 + 0 NA Intergenic Intergenic 14205 ENSMUSG00000054666.7 ENSMUSG00000054666 ENSMUST00000067840 Olfr63 protein_coding Interval_171329 chr9 116401590 116401834 + 0 NA Intergenic Intergenic 70544 ENSMUSG00000110752.1 ENSMUSG00000110752 ENSMUST00000217456 D730003K21Rik lincRNA Interval_83963 chr19 5824424 5825441 + 0 NA promoter-TSS (ENSMUSG00000098865.1) sRNA-promoter-TSS (ENSMUSG00000098865.1) -225 ENSMUSG00000098865.1 ENSMUSG00000098865 ENSMUST00000184512 Gm27702 sRNA Interval_118396 chr4 131109003 131109483 + 0 NA Intergenic Intergenic -98769 ENSMUSG00000086262.7 ENSMUSG00000086262 ENSMUST00000153810 A930031H19Rik lincRNA Interval_77682 chr17 94134786 94135021 + 0 NA Intergenic Intergenic -2632 ENSMUSG00000117543.1 ENSMUSG00000117543 ENSMUST00000235005 Gm50004 processed_pseudogene Interval_152491 chr7 133440865 133442187 + 0 NA Intergenic Intergenic -108325 ENSMUSG00000109619.1 ENSMUSG00000109619 ENSMUST00000209700 Gm45672 lincRNA Interval_46597 chr13 67460124 67460656 + 0 NA exon (ENSMUSG00000097244.1, exon 1 of 1) processed_pseudogene-exon (ENSMUSG00000097244.1, exon 1 of 1) 390 ENSMUSG00000097244.1 ENSMUSG00000097244 ENSMUST00000181249 Gm7928 processed_pseudogene Interval_171265 chr9 115802841 115803367 + 0 NA Intergenic Intergenic 122361 ENSMUSG00000110905.1 ENSMUSG00000110905 ENSMUST00000215982 Gm48007 lincRNA Interval_19648 chr10 106926072 106926377 + 0 NA intron (ENSMUSG00000053825.15, intron 8 of 10) protein_coding-intron (ENSMUSG00000053825.15, intron 29 of 31) -23073 ENSMUSG00000112443.1 ENSMUSG00000112443 ENSMUST00000217746 Gm19007 processed_pseudogene Interval_148124 chr7 79371578 79371956 + 0 NA Intergenic Intergenic 15145 ENSMUSG00000039194.16 ENSMUSG00000039194 ENSMUST00000206695 Rlbp1 protein_coding Interval_135908 chr6 48601485 48602796 + 0 NA promoter-TSS (ENSMUSG00000007216.6) protein_coding-promoter-TSS (ENSMUSG00000007216.6) 77 ENSMUSG00000007216.6 ENSMUSG00000007216 ENSMUST00000061720 Zfp775 protein_coding Interval_9459 chr1 157355914 157356320 + 0 NA promoter-TSS (ENSMUSG00000102391.1) TEC-promoter-TSS (ENSMUSG00000102391.1) -467 ENSMUSG00000102391.1 ENSMUSG00000102391 ENSMUST00000192256 Gm37578 TEC Interval_64186 chr16 8906054 8906595 + 0 NA Intergenic Intergenic 16065 ENSMUSG00000068674.3 ENSMUSG00000068674 ENSMUST00000090395 Gm10247 processed_pseudogene Interval_104829 chr3 75630261 75630664 + 0 NA intron (ENSMUSG00000027834.15, intron 6 of 8) protein_coding-intron (ENSMUSG00000027834.15, intron 6 of 8) 11115 ENSMUSG00000102625.1 ENSMUSG00000102625 ENSMUST00000192682 Gm37672 TEC Interval_123513 chr5 33102199 33103194 + 0 NA Intergenic Intergenic -1523 ENSMUSG00000011034.6 ENSMUSG00000011034 ENSMUST00000011178 Slc5a1 protein_coding Interval_105643 chr3 88315081 88315957 + 0 NA intron (ENSMUSG00000001416.13, intron 10 of 12) protein_coding-intron (ENSMUSG00000001416.13, intron 10 of 13) -9536 ENSMUSG00000001418.13 ENSMUSG00000001418 ENSMUST00000154381 Glmp protein_coding Interval_8207 chr1 136508092 136508370 + 0 NA TTS (ENSMUSG00000099337.1) processed_pseudogene-TTS (ENSMUSG00000099337.1) 822 ENSMUSG00000099337.1 ENSMUSG00000099337 ENSMUST00000088648 Gm29486 processed_pseudogene Interval_139515 chr6 100670225 100671606 + 0 NA intron (ENSMUSG00000035378.17, intron 1 of 10) protein_coding-intron (ENSMUSG00000035378.17, intron 1 of 7) 242 ENSMUSG00000035378.17 ENSMUSG00000035378 ENSMUST00000162776 Shq1 protein_coding Interval_168536 chr9 83294542 83294905 + 0 NA Intergenic Intergenic -40701 ENSMUSG00000098747.7 ENSMUSG00000098747 ENSMUST00000184080 Gm27216 lincRNA Interval_139581 chr6 101629321 101629875 + 0 NA Intergenic Intergenic -22636 ENSMUSG00000107738.1 ENSMUSG00000107738 ENSMUST00000204183 Gm32453 processed_pseudogene Interval_94932 chr2 101979069 101980211 + 0 NA intron (ENSMUSG00000048058.17, intron 4 of 5) protein_coding-intron (ENSMUSG00000048058.17, intron 4 of 5) -59989 ENSMUSG00000085417.1 ENSMUSG00000085417 ENSMUST00000123891 Gm13919 antisense Interval_156924 chr8 61713242 61714602 + 0 NA intron (ENSMUSG00000058056.16, intron 2 of 8) protein_coding-intron (ENSMUSG00000058056.16, intron 3 of 19) 107594 ENSMUSG00000110131.1 ENSMUSG00000110131 ENSMUST00000210904 Gm18066 processed_pseudogene Interval_147707 chr7 72313806 72314641 + 0 NA Intergenic Intergenic -84863 ENSMUSG00000032776.9 ENSMUSG00000032776 ENSMUST00000206755 Mctp2 protein_coding Interval_87706 chr19 55238700 55239048 + 0 NA intron (ENSMUSG00000055523.7, intron 1 of 20) protein_coding-intron (ENSMUSG00000055523.7, intron 1 of 20) 2362 ENSMUSG00000055523.7 ENSMUSG00000055523 ENSMUST00000069183 Gucy2g protein_coding Interval_148552 chr7 82504005 82505251 + 0 NA intron (ENSMUSG00000070469.12, intron 9 of 29) protein_coding-intron (ENSMUSG00000070469.12, intron 9 of 29) 96154 ENSMUSG00000070469.12 ENSMUSG00000070469 ENSMUST00000172784 Adamtsl3 protein_coding Interval_162728 chr9 8091346 8091759 + 0 NA intron (ENSMUSG00000040729.8, intron 9 of 11) protein_coding-intron (ENSMUSG00000040729.8, intron 8 of 10) 42742 ENSMUSG00000040729.8 ENSMUSG00000040729 ENSMUST00000214150 Cep126 protein_coding Interval_35161 chr12 17690386 17692176 + 0 NA intron (ENSMUSG00000071379.2, intron 1 of 3) protein_coding-intron (ENSMUSG00000071379.2, intron 1 of 3) -36945 ENSMUSG00000071379.2 ENSMUSG00000071379 ENSMUST00000222944 Hpcal1 protein_coding Interval_105356 chr3 85438122 85438374 + 0 NA intron (ENSMUSG00000110441.1, intron 4 of 4) protein_coding-intron (ENSMUSG00000102805.5, intron 3 of 9) -10120 ENSMUSG00000105012.1 ENSMUSG00000105012 ENSMUST00000200057 Gm42813 lincRNA Interval_133880 chr6 13980662 13980908 + 0 NA intron (ENSMUSG00000097616.7, intron 2 of 2) lincRNA-intron (ENSMUSG00000097616.7, intron 2 of 2) -25222 ENSMUSG00000107942.1 ENSMUSG00000107942 ENSMUST00000204172 Gm44411 processed_pseudogene Interval_37259 chr12 63393470 63394183 + 0 NA Intergenic Intergenic 38042 ENSMUSG00000114123.1 ENSMUSG00000114123 ENSMUST00000222999 Gm48416 processed_pseudogene Interval_86553 chr19 41655713 41656431 + 0 NA intron (ENSMUSG00000025020.11, intron 3 of 11) protein_coding-intron (ENSMUSG00000025020.11, intron 4 of 36) 67421 ENSMUSG00000098286.1 ENSMUSG00000098286 ENSMUST00000183602 Mir8091 miRNA Interval_16167 chr10 61194244 61194522 + 0 NA Intergenic Intergenic 19121 ENSMUSG00000020096.21 ENSMUSG00000020096 ENSMUST00000126831 Tbata protein_coding Interval_147733 chr7 73145705 73146075 + 0 NA Intergenic Intergenic 21439 ENSMUSG00000108345.1 ENSMUSG00000108345 ENSMUST00000205892 4933435G04Rik lincRNA Interval_23798 chr11 26371777 26372458 + 0 NA Intergenic Intergenic -15085 ENSMUSG00000004018.9 ENSMUSG00000004018 ENSMUST00000134445 Fancl protein_coding Interval_48587 chr13 100526471 100527222 + 0 NA intron (ENSMUSG00000021638.12, intron 4 of 8) protein_coding-intron (ENSMUSG00000021638.12, intron 4 of 8) 25635 ENSMUSG00000021638.12 ENSMUSG00000021638 ENSMUST00000159515 Ocln protein_coding Interval_10500 chr1 171344442 171346493 + 0 NA promoter-TSS (ENSMUSG00000006412.10) protein_coding-promoter-TSS (ENSMUSG00000006412.10) 158 ENSMUSG00000013997.10 ENSMUSG00000013997 ENSMUST00000148339 Nit1 protein_coding Interval_11207 chr1 180165981 180166936 + 0 NA TTS (ENSMUSG00000026490.18) protein_coding-TTS (ENSMUSG00000026490.18) -18307 ENSMUSG00000103636.1 ENSMUSG00000103636 ENSMUST00000195719 Gm38331 TEC Interval_117168 chr4 120191961 120192387 + 0 NA Intergenic Intergenic 30968 ENSMUSG00000028635.7 ENSMUSG00000028635 ENSMUST00000030384 Edn2 protein_coding Interval_103439 chr3 41581841 41583801 + 0 NA intron (ENSMUSG00000025764.14, intron 2 of 5) protein_coding-intron (ENSMUSG00000025764.14, intron 2 of 10) -19123 ENSMUSG00000103843.1 ENSMUSG00000103843 ENSMUST00000192060 Gm31266 antisense Interval_123817 chr5 35722349 35723363 + 0 NA TTS (ENSMUSG00000036553.16) protein_coding-TTS (ENSMUSG00000036553.16) 301 ENSMUSG00000087703.1 ENSMUSG00000087703 ENSMUST00000135451 Gm15650 antisense Interval_89196 chr2 17988337 17990131 + 0 NA Intergenic Intergenic 7724 ENSMUSG00000062651.4 ENSMUSG00000062651 ENSMUST00000105001 H2al2a protein_coding Interval_126772 chr5 92811256 92811998 + 0 NA intron (ENSMUSG00000029381.16, intron 1 of 9) protein_coding-intron (ENSMUSG00000029381.16, intron 1 of 9) -23065 ENSMUSG00000089268.1 ENSMUSG00000089268 ENSMUST00000158643 Mir1961 miRNA Interval_173230 chrX 74517290 74518298 + 0 NA Intergenic Intergenic 6848 ENSMUSG00000082447.1 ENSMUSG00000082447 ENSMUST00000119618 Gm15364 processed_pseudogene Interval_62561 chr15 94651088 94651658 + 0 NA intron (ENSMUSG00000063296.5, intron 2 of 2) protein_coding-intron (ENSMUSG00000063296.5, intron 2 of 7) 22141 ENSMUSG00000063296.5 ENSMUSG00000063296 ENSMUST00000080141 Tmem117 protein_coding Interval_113561 chr4 56716588 56717042 + 0 NA Intergenic Intergenic -23255 ENSMUSG00000096930.1 ENSMUSG00000096930 ENSMUST00000181745 Gm26657 protein_coding Interval_118237 chr4 129714177 129714425 + 0 NA promoter-TSS (ENSMUSG00000028790.13) protein_coding-promoter-TSS (ENSMUSG00000028790.13) -481 ENSMUSG00000028790.13 ENSMUSG00000028790 ENSMUST00000139281 Khdrbs1 protein_coding Interval_80583 chr18 44425490 44425694 + 0 NA TTS (ENSMUSG00000024472.9) protein_coding-TTS (ENSMUSG00000024472.9) 45090 ENSMUSG00000024472.9 ENSMUSG00000024472 ENSMUST00000025350 Dcp2 protein_coding Interval_127354 chr5 103368794 103369241 + 0 NA Intergenic Intergenic -12319 ENSMUSG00000104684.1 ENSMUSG00000104684 ENSMUST00000200007 5430427N15Rik lincRNA Interval_22865 chr11 16859638 16860022 + 0 NA intron (ENSMUSG00000020122.16, intron 2 of 15) protein_coding-intron (ENSMUSG00000020122.16, intron 2 of 27) -29128 ENSMUSG00000085091.1 ENSMUSG00000085091 ENSMUST00000150329 Egfros antisense Interval_89084 chr2 16016844 16018381 + 0 NA intron (ENSMUSG00000075520.5, intron 29 of 38) protein_coding-intron (ENSMUSG00000075520.5, intron 29 of 38) 5813 ENSMUSG00000103865.1 ENSMUSG00000103865 ENSMUST00000193596 Gm37416 TEC Interval_63783 chr15 103388547 103389125 + 0 NA Intergenic Intergenic 10765 ENSMUSG00000104327.1 ENSMUSG00000104327 ENSMUST00000193409 Gm37322 TEC Interval_131866 chr5 140472510 140472759 + 0 NA intron (ENSMUSG00000106350.2, intron 10 of 19) protein_coding-intron (ENSMUSG00000106350.2, intron 10 of 19) -18743 ENSMUSG00000105056.1 ENSMUSG00000105056 ENSMUST00000196158 Gm42805 processed_pseudogene Interval_129264 chr5 118518373 118519162 + 0 NA Intergenic Intergenic 31800 ENSMUSG00000082365.2 ENSMUSG00000082365 ENSMUST00000119191 Gm15754 transcribed_processed_pseudogene Interval_137232 chr6 70543406 70543665 + 0 NA Intergenic Intergenic -9704 ENSMUSG00000105499.1 ENSMUSG00000105499 ENSMUST00000197500 Igkv3-11 IG_V_pseudogene Interval_162187 chr8 125781819 125782427 + 0 NA intron (ENSMUSG00000060212.13, intron 10 of 18) protein_coding-intron (ENSMUSG00000060212.13, intron 25 of 33) 46288 ENSMUSG00000031851.14 ENSMUSG00000031851 ENSMUST00000152189 Ntpcr protein_coding Interval_140621 chr6 120151603 120153343 + 0 NA intron (ENSMUSG00000041377.12, intron 1 of 3) protein_coding-intron (ENSMUSG00000041377.12, intron 1 of 3) -8723 ENSMUSG00000095086.1 ENSMUSG00000095086 ENSMUST00000180263 Gm25327 snRNA Interval_20617 chr10 119575566 119575925 + 0 NA intron (ENSMUSG00000034813.18, intron 1 of 21) protein_coding-intron (ENSMUSG00000034813.18, intron 1 of 22) 41975 ENSMUSG00000112555.1 ENSMUSG00000112555 ENSMUST00000218599 Gm47027 antisense Interval_74246 chr17 47694249 47695634 + 0 NA promoter-TSS (ENSMUSG00000023266.11) protein_coding-promoter-TSS (ENSMUSG00000023266.11) -486 ENSMUSG00000079444.9 ENSMUSG00000079444 ENSMUST00000143789 Gm21981 protein_coding Interval_59893 chr15 61039964 61040305 + 0 NA Intergenic Intergenic -101498 ENSMUSG00000115809.1 ENSMUSG00000115809 ENSMUST00000226169 Gm48951 processed_pseudogene Interval_133246 chr5 150850813 150851739 + 0 NA intron (ENSMUSG00000106692.1, intron 1 of 3) lincRNA-intron (ENSMUSG00000106692.1, intron 1 of 3) 28417 ENSMUSG00000106692.1 ENSMUSG00000106692 ENSMUST00000201101 Gm36447 lincRNA Interval_12761 chr10 5026696 5028682 + 0 NA intron (ENSMUSG00000096054.3, intron 145 of 145) protein_coding-intron (ENSMUSG00000096054.3, intron 16 of 16) 8767 ENSMUSG00000093189.1 ENSMUSG00000093189 ENSMUST00000175448 Gm25694 ribozyme Interval_135859 chr6 47966296 47966529 + 0 NA Intergenic Intergenic 11464 ENSMUSG00000107824.1 ENSMUSG00000107824 ENSMUST00000203599 Gm6443 processed_pseudogene Interval_6808 chr1 119729972 119731906 + 0 NA intron (ENSMUSG00000026384.13, intron 10 of 18) protein_coding-intron (ENSMUSG00000026384.13, intron 10 of 26) -14946 ENSMUSG00000026384.13 ENSMUSG00000026384 ENSMUST00000163621 Ptpn4 protein_coding Interval_171328 chr9 116400103 116400801 + 0 NA Intergenic Intergenic 69284 ENSMUSG00000110752.1 ENSMUSG00000110752 ENSMUST00000217456 D730003K21Rik lincRNA Interval_16581 chr10 64344544 64344876 + 0 NA intron (ENSMUSG00000060843.11, intron 9 of 17) protein_coding-intron (ENSMUSG00000060843.11, intron 8 of 16) -39966 ENSMUSG00000089003.1 ENSMUSG00000089003 ENSMUST00000158378 Gm23854 snRNA Interval_111377 chr4 20020171 20020733 + 0 NA intron (ENSMUSG00000073988.13, intron 3 of 3) protein_coding-intron (ENSMUSG00000073988.13, intron 2 of 4) 12514 ENSMUSG00000073988.13 ENSMUSG00000073988 ENSMUST00000098244 Ttpa protein_coding Interval_161307 chr8 119646343 119647275 + 0 NA Intergenic Intergenic -11463 ENSMUSG00000045246.11 ENSMUSG00000045246 ENSMUST00000061828 Kcng4 protein_coding Interval_35744 chr12 28805215 28805640 + 0 NA intron (ENSMUSG00000036613.8, intron 4 of 9) protein_coding-intron (ENSMUSG00000036613.8, intron 4 of 9) -4711 ENSMUSG00000113886.1 ENSMUSG00000113886 ENSMUST00000222829 Gm48905 sense_intronic Interval_146499 chr7 46427535 46428313 + 0 NA TTS (ENSMUSG00000058975.7) protein_coding-TTS (ENSMUSG00000058975.7) -22489 ENSMUSG00000094229.1 ENSMUSG00000094229 ENSMUST00000179018 Gm22969 snRNA Interval_90334 chr2 29833982 29834208 + 0 NA TTS (ENSMUSG00000069020.9) protein_coding-TTS (ENSMUSG00000069020.9) 6753 ENSMUSG00000069020.9 ENSMUSG00000069020 ENSMUST00000123021 Urm1 protein_coding Interval_117365 chr4 123270991 123271602 + 0 NA intron (ENSMUSG00000011257.19, intron 2 of 2) protein_coding-intron (ENSMUSG00000011257.19, intron 2 of 2) 4176 ENSMUSG00000082634.1 ENSMUSG00000082634 ENSMUST00000120919 Gm12900 processed_pseudogene Interval_88211 chr19 60705823 60706134 + 0 NA Intergenic Intergenic -50009 ENSMUSG00000072437.4 ENSMUSG00000072437 ENSMUST00000088237 Nanos1 protein_coding Interval_67601 chr16 52123417 52124060 + 0 NA intron (ENSMUSG00000022637.11, intron 4 of 18) protein_coding-intron (ENSMUSG00000022637.11, intron 4 of 17) -18591 ENSMUSG00000095977.1 ENSMUSG00000095977 ENSMUST00000158181 Gm23513 snoRNA Interval_66360 chr16 33379299 33381595 + 0 NA promoter-TSS (ENSMUSG00000022811.17) protein_coding-promoter-TSS (ENSMUSG00000022811.17) 228 ENSMUSG00000097318.2 ENSMUSG00000097318 ENSMUST00000180923 1700007L15Rik bidirectional_promoter_lncRNA Interval_48611 chr13 100663451 100664016 + 0 NA intron (ENSMUSG00000078941.9, intron 2 of 4) protein_coding-intron (ENSMUSG00000078941.9, intron 2 of 4) -5984 ENSMUSG00000048924.14 ENSMUSG00000048924 ENSMUST00000057325 Ccdc125 protein_coding Interval_53562 chr14 59295118 59295330 + 0 NA intron (ENSMUSG00000044703.5, intron 1 of 7) protein_coding-intron (ENSMUSG00000044703.5, intron 1 of 7) 2298 ENSMUSG00000044703.5 ENSMUSG00000044703 ENSMUST00000062307 Phf11a protein_coding Interval_47228 chr13 78358394 78359177 + 0 NA Intergenic Intergenic -15394 ENSMUSG00000114632.1 ENSMUSG00000114632 ENSMUST00000225777 Gm48399 lincRNA Interval_22436 chr11 10086938 10088657 + 0 NA Intergenic Intergenic -151540 ENSMUSG00000082312.1 ENSMUSG00000082312 ENSMUST00000117538 Gm11996 processed_pseudogene Interval_101659 chr3 8664638 8664927 + 0 NA TTS (ENSMUSG00000040289.8) protein_coding-TTS (ENSMUSG00000040289.8) 2182 ENSMUSG00000040289.8 ENSMUSG00000040289 ENSMUST00000194299 Hey1 protein_coding Interval_95076 chr2 103734692 103735151 + 0 NA promoter-TSS (ENSMUSG00000027185.15) protein_coding-promoter-TSS (ENSMUSG00000027185.15) 19886 ENSMUSG00000032724.5 ENSMUSG00000032724 ENSMUST00000131122 Abtb2 protein_coding Interval_79693 chr18 34561023 34561948 + 0 NA Intergenic Intergenic 17602 ENSMUSG00000035984.14 ENSMUSG00000035984 ENSMUST00000154342 Nme5 protein_coding Interval_4970 chr1 83064698 83065250 + 0 NA Intergenic Intergenic -2128 ENSMUSG00000099691.1 ENSMUSG00000099691 ENSMUST00000190858 Gm29518 processed_pseudogene Interval_45322 chr13 54378165 54379207 + 0 NA exon (ENSMUSG00000025867.8, exon 2 of 4) protein_coding-exon (ENSMUSG00000025867.8, exon 2 of 4) 7337 ENSMUSG00000025867.8 ENSMUSG00000025867 ENSMUST00000026985 Cplx2 protein_coding Interval_134313 chr6 25011988 25012236 + 0 NA Intergenic Intergenic 35186 ENSMUSG00000107212.1 ENSMUSG00000107212 ENSMUST00000202130 Gm5302 processed_pseudogene Interval_89853 chr2 25993428 25993689 + 0 NA TTS (ENSMUSG00000082357.1) processed_pseudogene-TTS (ENSMUSG00000082357.1) 1625 ENSMUSG00000082357.1 ENSMUSG00000082357 ENSMUST00000118484 Gm13542 processed_pseudogene Interval_142785 chr6 145656363 145657854 + 0 NA Intergenic Intergenic 41351 ENSMUSG00000067338.6 ENSMUSG00000067338 ENSMUST00000087445 Tuba3b protein_coding Interval_57413 chr15 10647886 10648666 + 0 NA intron (ENSMUSG00000022246.14, intron 2 of 16) protein_coding-intron (ENSMUSG00000022246.14, intron 2 of 17) 47939 ENSMUSG00000115667.1 ENSMUSG00000115667 ENSMUST00000228059 Gm10389 antisense Interval_46501 chr13 66641722 66642868 + 0 NA Intergenic Intergenic -19390 ENSMUSG00000114814.1 ENSMUSG00000114814 ENSMUST00000223830 Gm48361 processed_pseudogene Interval_145386 chr7 34366937 34368594 + 0 NA intron (ENSMUSG00000066568.12, intron 3 of 9) protein_coding-intron (ENSMUSG00000066568.12, intron 3 of 10) -2434 ENSMUSG00000108447.1 ENSMUSG00000108447 ENSMUST00000205645 Gm44567 TEC Interval_76339 chr17 79206442 79206721 + 0 NA Intergenic Intergenic 51468 ENSMUSG00000117047.1 ENSMUSG00000117047 ENSMUST00000232946 Gm5230 processed_pseudogene Interval_28721 chr11 77916089 77917895 + 0 NA intron (ENSMUSG00000055045.5, intron 2 of 2) lincRNA-intron (ENSMUSG00000055045.5, intron 2 of 2) 12296 ENSMUSG00000055045.5 ENSMUSG00000055045 ENSMUST00000132487 Gm11190 lincRNA Interval_104477 chr3 66262320 66262557 + 0 NA intron (ENSMUSG00000027831.9, intron 2 of 3) protein_coding-intron (ENSMUSG00000027831.9, intron 2 of 13) 34310 ENSMUSG00000027831.9 ENSMUSG00000027831 ENSMUST00000182815 Veph1 protein_coding Interval_172148 chrX 8013167 8014119 + 0 NA intron (ENSMUSG00000031163.2, intron 2 of 3) protein_coding-intron (ENSMUSG00000031163.2, intron 2 of 3) 4849 ENSMUSG00000031163.2 ENSMUSG00000031163 ENSMUST00000033503 Glod5 protein_coding Interval_68229 chr16 69948700 69948903 + 0 NA Intergenic Intergenic -88315 ENSMUSG00000063163.13 ENSMUSG00000063163 ENSMUST00000164146 Speer2 protein_coding Interval_124486 chr5 48784518 48784733 + 0 NA intron (ENSMUSG00000029088.16, intron 1 of 8) protein_coding-intron (ENSMUSG00000029088.16, intron 1 of 8) 7341 ENSMUSG00000105454.1 ENSMUSG00000105454 ENSMUST00000198760 Gm43830 TEC Interval_136067 chr6 50422226 50423821 + 0 NA intron (ENSMUSG00000029822.15, intron 2 of 3) protein_coding-intron (ENSMUSG00000029822.15, intron 2 of 21) -71066 ENSMUSG00000029822.15 ENSMUSG00000029822 ENSMUST00000154333 Osbpl3 protein_coding Interval_116222 chr4 108822807 108823089 + 0 NA intron (ENSMUSG00000028568.16, intron 1 of 1) protein_coding-intron (ENSMUSG00000028568.16, intron 3 of 5) 7603 ENSMUSG00000028568.16 ENSMUSG00000028568 ENSMUST00000139464 Btf3l4 protein_coding Interval_92202 chr2 56114429 56114665 + 0 NA Intergenic Intergenic 74694 ENSMUSG00000082142.1 ENSMUSG00000082142 ENSMUST00000120018 Gm13518 processed_pseudogene Interval_30754 chr11 96283048 96285543 + 0 NA TTS (ENSMUSG00000056648.5) protein_coding-TTS (ENSMUSG00000056648.5) 1570 ENSMUSG00000056648.5 ENSMUSG00000056648 ENSMUST00000168043 Hoxb8 protein_coding Interval_109435 chr3 142348490 142349540 + 0 NA intron (ENSMUSG00000028273.15, intron 2 of 12) protein_coding-intron (ENSMUSG00000028273.15, intron 3 of 12) -45036 ENSMUSG00000028273.15 ENSMUSG00000028273 ENSMUST00000058626 Pdlim5 protein_coding Interval_105967 chr3 90349277 90349788 + 0 NA intron (ENSMUSG00000042390.9, intron 5 of 7) protein_coding-intron (ENSMUSG00000042390.9, intron 3 of 9) -1886 ENSMUSG00000042390.9 ENSMUSG00000042390 ENSMUST00000206907 Gatad2b protein_coding Interval_55033 chr14 77263408 77264414 + 0 NA intron (ENSMUSG00000022012.9, intron 1 of 2) protein_coding-intron (ENSMUSG00000022012.9, intron 1 of 18) -11597 ENSMUSG00000063556.5 ENSMUSG00000063556 ENSMUST00000099431 Gm10132 processed_pseudogene Interval_112550 chr4 43045388 43046443 + 0 NA promoter-TSS (ENSMUSG00000036002.12) protein_coding-promoter-TSS (ENSMUSG00000036002.12) -127 ENSMUSG00000096974.2 ENSMUSG00000096974 ENSMUST00000211208 Gm26881 antisense Interval_107428 chr3 107582852 107583674 + 0 NA Intergenic Intergenic -17173 ENSMUSG00000014603.3 ENSMUSG00000014603 ENSMUST00000233202 Alx3 protein_coding Interval_97168 chr2 131953401 131953929 + 0 NA exon (ENSMUSG00000027338.16, exon 2 of 2) protein_coding-exon (ENSMUSG00000027338.16, exon 2 of 2) 2803 ENSMUSG00000027338.16 ENSMUSG00000027338 ENSMUST00000110169 Prnd protein_coding Interval_98427 chr2 152288389 152289029 + 0 NA Intergenic Intergenic -5471 ENSMUSG00000027465.13 ENSMUSG00000027465 ENSMUST00000141373 Tbc1d20 protein_coding Interval_158390 chr8 83323174 83323515 + 0 NA TTS (ENSMUSG00000035151.12) protein_coding-TTS (ENSMUSG00000035151.12) 9142 ENSMUSG00000035151.12 ENSMUSG00000035151 ENSMUST00000126079 Elmod2 protein_coding Interval_34358 chr12 3596441 3597491 + 0 NA TTS (ENSMUSG00000071454.13) protein_coding-TTS (ENSMUSG00000071454.13) 24496 ENSMUSG00000071454.13 ENSMUSG00000071454 ENSMUST00000174293 Dtnb protein_coding Interval_125529 chr5 69065274 69065871 + 0 NA Intergenic Intergenic 104676 ENSMUSG00000107208.1 ENSMUSG00000107208 ENSMUST00000201492 D130004A15Rik TEC Interval_64562 chr16 13339342 13339579 + 0 NA intron (ENSMUSG00000009569.14, intron 3 of 16) protein_coding-intron (ENSMUSG00000009569.14, intron 3 of 16) -18961 ENSMUSG00000009569.14 ENSMUSG00000009569 ENSMUST00000149359 Mrtfb protein_coding Interval_54535 chr14 70537786 70538614 + 0 NA TTS (ENSMUSG00000033595.7) protein_coding-TTS (ENSMUSG00000033595.7) 7330 ENSMUSG00000033595.7 ENSMUSG00000033595 ENSMUST00000226548 Lgi3 protein_coding Interval_62579 chr15 94835290 94835728 + 0 NA intron (ENSMUSG00000063296.5, intron 3 of 7) protein_coding-intron (ENSMUSG00000063296.5, intron 3 of 7) 151629 ENSMUSG00000077447.1 ENSMUSG00000077447 ENSMUST00000104259 Gm23129 snoRNA Interval_165931 chr9 54752010 54752767 + 0 NA Intergenic Intergenic -12360 ENSMUSG00000032291.8 ENSMUSG00000032291 ENSMUST00000034830 Crabp1 protein_coding Interval_100556 chr2 170116630 170117048 + 0 NA intron (ENSMUSG00000052056.14, intron 3 of 6) protein_coding-intron (ENSMUSG00000052056.14, intron 2 of 5) 31264 ENSMUSG00000052056.14 ENSMUSG00000052056 ENSMUST00000149318 Zfp217 protein_coding Interval_78566 chr18 14773813 14774472 + 0 NA Intergenic Intergenic -9103 ENSMUSG00000054321.7 ENSMUSG00000054321 ENSMUST00000169862 Taf4b protein_coding Interval_39631 chr12 91676563 91677083 + 0 NA intron (ENSMUSG00000090722.8, intron 1 of 1) protein_coding-intron (ENSMUSG00000020961.15, intron 4 of 6) -7842 ENSMUSG00000086689.1 ENSMUSG00000086689 ENSMUST00000151945 Gm16876 antisense Interval_14 GL456210.1 164337 164783 + 0 NA NA NA NA NA Interval_94601 chr2 92554144 92555363 + 0 NA Intergenic Intergenic -6516 ENSMUSG00000080860.1 ENSMUSG00000080860 ENSMUST00000119963 Gm13815 processed_pseudogene Interval_6332 chr1 105998535 105998883 + 0 NA intron (ENSMUSG00000038866.15, intron 1 of 12) protein_coding-intron (ENSMUSG00000038866.15, intron 1 of 13) -5428 ENSMUSG00000038866.15 ENSMUSG00000038866 ENSMUST00000131830 Zcchc2 protein_coding Interval_48290 chr13 97809507 97809772 + 0 NA intron (ENSMUSG00000114348.1, intron 2 of 2) lincRNA-intron (ENSMUSG00000114348.1, intron 2 of 2) 16246 ENSMUSG00000114348.1 ENSMUSG00000114348 ENSMUST00000224296 Gm41031 lincRNA Interval_42606 chr13 16658502 16658959 + 0 NA Intergenic Intergenic -19240 ENSMUSG00000113862.1 ENSMUSG00000113862 ENSMUST00000221660 Gm7537 processed_pseudogene Interval_173009 chrX 62280808 62281244 + 0 NA Intergenic Intergenic -2473 ENSMUSG00000045330.8 ENSMUSG00000045330 ENSMUST00000051414 4933402E13Rik protein_coding Interval_49947 chr13 118705025 118706411 + 0 NA intron (ENSMUSG00000021732.14, intron 3 of 4) protein_coding-intron (ENSMUSG00000021732.14, intron 3 of 4) 9678 ENSMUSG00000086709.1 ENSMUSG00000086709 ENSMUST00000144680 Gm16263 antisense Interval_57228 chr15 7994830 7995157 + 0 NA intron (ENSMUSG00000039828.7, intron 9 of 17) protein_coding-intron (ENSMUSG00000039828.7, intron 9 of 17) 19665 ENSMUSG00000098281.1 ENSMUSG00000098281 ENSMUST00000184975 Gm27529 miRNA Interval_14072 chr10 26520654 26521626 + 0 NA Intergenic Intergenic 28042 ENSMUSG00000112797.1 ENSMUSG00000112797 ENSMUST00000219589 Gm30034 lincRNA Interval_167352 chr9 67711291 67712329 + 0 NA Intergenic Intergenic 11629 ENSMUSG00000111819.1 ENSMUSG00000111819 ENSMUST00000216655 Gm47110 processed_pseudogene Interval_155244 chr8 28628981 28630054 + 0 NA Intergenic Intergenic 35985 ENSMUSG00000097776.1 ENSMUSG00000097776 ENSMUST00000181267 Gm26795 lincRNA Interval_174777 chrX 166478979 166480212 + 0 NA promoter-TSS (ENSMUSG00000079316.10) protein_coding-promoter-TSS (ENSMUSG00000079316.10) 4022 ENSMUSG00000085880.4 ENSMUSG00000085880 ENSMUST00000146636 Gm15229 processed_pseudogene Interval_11729 chr1 184948124 184948324 + 0 NA intron (ENSMUSG00000026620.11, intron 1 of 17) protein_coding-intron (ENSMUSG00000026620.11, intron 1 of 17) 25088 ENSMUSG00000102784.1 ENSMUSG00000102784 ENSMUST00000192968 Gm38251 antisense Interval_84009 chr19 6076691 6077554 + 0 NA promoter-TSS (ENSMUSG00000024797.14) protein_coding-promoter-TSS (ENSMUSG00000024797.14) -2911 ENSMUSG00000047733.10 ENSMUSG00000047733 ENSMUST00000143303 Tmem262 protein_coding Interval_120169 chr4 143169689 143169989 + 0 NA intron (ENSMUSG00000057637.13, intron 4 of 4) protein_coding-intron (ENSMUSG00000057637.13, intron 5 of 9) 3236 ENSMUSG00000083826.1 ENSMUSG00000083826 ENSMUST00000118638 Gm13039 processed_pseudogene Interval_77384 chr17 88352958 88353484 + 0 NA intron (ENSMUSG00000117351.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000117351.1, intron 1 of 1) -10739 ENSMUSG00000088791.1 ENSMUSG00000088791 ENSMUST00000158166 Gm22542 snRNA Interval_76170 chr17 75930737 75931479 + 0 NA Intergenic Intergenic 70085 ENSMUSG00000117539.1 ENSMUSG00000117539 ENSMUST00000234389 Gm4710 lincRNA Interval_115762 chr4 103447298 103449062 + 0 NA intron (ENSMUSG00000086136.1, intron 2 of 2) lincRNA-intron (ENSMUSG00000086136.1, intron 2 of 2) -23679 ENSMUSG00000094477.1 ENSMUSG00000094477 ENSMUST00000179866 Gm23064 miRNA Interval_119260 chr4 136512909 136513597 + 0 NA intron (ENSMUSG00000001089.14, intron 1 of 1) protein_coding-intron (ENSMUSG00000001089.14, intron 1 of 3) 39289 ENSMUSG00000036940.15 ENSMUSG00000036940 ENSMUST00000170979 Kdm1a protein_coding Interval_47219 chr13 78197861 78199606 + 0 NA promoter-TSS (ENSMUSG00000069171.14) protein_coding-promoter-TSS (ENSMUSG00000069171.14) -1189 ENSMUSG00000069171.14 ENSMUSG00000069171 ENSMUST00000224798 Nr2f1 protein_coding Interval_85725 chr19 30105835 30106368 + 0 NA intron (ENSMUSG00000024827.10, intron 21 of 24) protein_coding-intron (ENSMUSG00000024827.10, intron 21 of 24) 27597 ENSMUSG00000024817.13 ENSMUSG00000024817 ENSMUST00000143769 Uhrf2 protein_coding Interval_168892 chr9 88425104 88425774 + 0 NA intron (ENSMUSG00000092541.7, intron 2 of 8) protein_coding-intron (ENSMUSG00000032422.18, intron 1 of 24) 13512 ENSMUSG00000032422.18 ENSMUSG00000032422 ENSMUST00000126563 Snx14 protein_coding Interval_95026 chr2 103268686 103269124 + 0 NA intron (ENSMUSG00000012350.15, intron 5 of 7) protein_coding-intron (ENSMUSG00000012350.15, intron 6 of 8) 34015 ENSMUSG00000012350.15 ENSMUSG00000012350 ENSMUST00000128546 Ehf protein_coding Interval_128383 chr5 113024458 113024674 + 0 NA Intergenic Intergenic -9052 ENSMUSG00000042249.11 ENSMUSG00000042249 ENSMUST00000197776 Grk3 protein_coding Interval_154428 chr8 16259925 16260255 + 0 NA intron (ENSMUSG00000060924.15, intron 12 of 33) protein_coding-intron (ENSMUSG00000060924.15, intron 12 of 69) 34087 ENSMUSG00000085150.1 ENSMUSG00000085150 ENSMUST00000129158 Gm16346 antisense Interval_95941 chr2 118570361 118570582 + 0 NA Intergenic Intergenic -23608 ENSMUSG00000080747.1 ENSMUSG00000080747 ENSMUST00000119095 Gm14016 processed_pseudogene Interval_112980 chr4 46612537 46612884 + 0 NA intron (ENSMUSG00000039813.14, intron 9 of 12) protein_coding-intron (ENSMUSG00000039813.14, intron 9 of 12) -10819 ENSMUSG00000028337.14 ENSMUSG00000028337 ENSMUST00000127304 Coro2a protein_coding Interval_156929 chr8 61815077 61815409 + 0 NA intron (ENSMUSG00000058056.16, intron 2 of 21) protein_coding-intron (ENSMUSG00000058056.16, intron 2 of 19) 6273 ENSMUSG00000110131.1 ENSMUSG00000110131 ENSMUST00000210904 Gm18066 processed_pseudogene Interval_41670 chr12 117605860 117606219 + 0 NA intron (ENSMUSG00000041992.9, intron 6 of 8) protein_coding-intron (ENSMUSG00000041992.9, intron 8 of 27) 4000 ENSMUSG00000113575.1 ENSMUSG00000113575 ENSMUST00000223270 A930023M06Rik sense_intronic Interval_151483 chr7 123002910 123005048 + 0 NA Intergenic Intergenic -6133 ENSMUSG00000108396.1 ENSMUSG00000108396 ENSMUST00000205729 Gm6905 processed_pseudogene Interval_115040 chr4 88788334 88788842 + 0 NA promoter-TSS (ENSMUSG00000100234.1) protein_coding-promoter-TSS (ENSMUSG00000100234.1) -44 ENSMUSG00000100234.1 ENSMUSG00000100234 ENSMUST00000178480 Gm13277 protein_coding Interval_89736 chr2 25123921 25124581 + 0 NA intron (ENSMUSG00000087028.7, intron 2 of 2) lincRNA-intron (ENSMUSG00000087028.7, intron 2 of 2) 7970 ENSMUSG00000118563.1 ENSMUSG00000118563 ENSMUST00000238850 AL732309.1 unitary_pseudogene Interval_62675 chr15 96184772 96185681 + 0 NA intron (ENSMUSG00000097536.2, intron 5 of 6) lincRNA-intron (ENSMUSG00000097536.2, intron 5 of 6) 68761 ENSMUSG00000097619.8 ENSMUSG00000097619 ENSMUST00000229950 4833422M21Rik processed_transcript Interval_96094 chr2 119719210 119719548 + 0 NA intron (ENSMUSG00000027304.9, intron 6 of 17) protein_coding-intron (ENSMUSG00000027304.9, intron 6 of 17) 8383 ENSMUSG00000027304.9 ENSMUSG00000027304 ENSMUST00000126984 Rtf1 protein_coding Interval_110508 chr4 3373091 3374121 + 0 NA Intergenic Intergenic -13240 ENSMUSG00000083489.1 ENSMUSG00000083489 ENSMUST00000118568 Gm11784 unprocessed_pseudogene Interval_128946 chr5 116240963 116241249 + 0 NA intron (ENSMUSG00000043913.14, intron 1 of 5) protein_coding-intron (ENSMUSG00000043913.14, intron 1 of 13) -2600 ENSMUSG00000086122.1 ENSMUSG00000086122 ENSMUST00000156169 Gm14507 antisense Interval_162022 chr8 124495570 124495942 + 0 NA Intergenic Intergenic -25063 ENSMUSG00000031979.17 ENSMUSG00000031979 ENSMUST00000129977 Cog2 protein_coding Interval_157919 chr8 75953567 75953775 + 0 NA intron (ENSMUSG00000031620.16, intron 13 of 13) protein_coding-intron (ENSMUSG00000031620.16, intron 12 of 12) -56355 ENSMUSG00000110603.1 ENSMUSG00000110603 ENSMUST00000212661 Gm45741 lincRNA Interval_148430 chr7 81198841 81199263 + 0 NA Intergenic Intergenic -5958 ENSMUSG00000109323.1 ENSMUSG00000109323 ENSMUST00000207652 Gm44968 lincRNA Interval_138503 chr6 88767567 88768558 + 0 NA intron (ENSMUSG00000033174.17, intron 3 of 7) protein_coding-intron (ENSMUSG00000033174.17, intron 3 of 7) 19389 ENSMUSG00000107719.1 ENSMUSG00000107719 ENSMUST00000204640 Gm43937 TEC Interval_146866 chr7 54027308 54027760 + 0 NA Intergenic Intergenic -18954 ENSMUSG00000099089.1 ENSMUSG00000099089 ENSMUST00000183968 Gm27921 miRNA Interval_104133 chr3 58919059 58919639 + 0 NA Intergenic Intergenic -53552 ENSMUSG00000043850.15 ENSMUSG00000043850 ENSMUST00000161419 Clrn1 protein_coding Interval_93233 chr2 71346740 71348618 + 0 NA intron (ENSMUSG00000027010.16, intron 2 of 16) protein_coding-intron (ENSMUSG00000027010.16, intron 1 of 1) 19854 ENSMUSG00000027010.16 ENSMUSG00000027010 ENSMUST00000146653 Slc25a12 protein_coding Interval_37306 chr12 65035973 65037344 + 0 NA intron (ENSMUSG00000035597.19, intron 1 of 14) protein_coding-intron (ENSMUSG00000035597.19, intron 1 of 13) -6632 ENSMUSG00000035597.19 ENSMUSG00000035597 ENSMUST00000220729 Prpf39 protein_coding Interval_76766 chr17 83903253 83904092 + 0 NA Intergenic Intergenic -14265 ENSMUSG00000117442.1 ENSMUSG00000117442 ENSMUST00000234364 1810073O08Rik lincRNA Interval_76501 chr17 80615081 80615400 + 0 NA intron (ENSMUSG00000024242.15, intron 4 of 18) protein_coding-intron (ENSMUSG00000024242.15, intron 19 of 33) 9746 ENSMUSG00000024242.15 ENSMUSG00000024242 ENSMUST00000234486 Map4k3 protein_coding Interval_103126 chr3 35726775 35727519 + 0 NA Intergenic Intergenic -8226 ENSMUSG00000064834.1 ENSMUSG00000064834 ENSMUST00000082900 Gm25696 snRNA Interval_145802 chr7 39440577 39441750 + 0 NA Intergenic Intergenic 8058 ENSMUSG00000046372.4 ENSMUSG00000046372 ENSMUST00000186976 Gm5590 transcribed_processed_pseudogene Interval_44632 chr13 46819818 46820006 + 0 NA intron (ENSMUSG00000021375.11, intron 9 of 25) protein_coding-intron (ENSMUSG00000021375.11, intron 9 of 37) -10855 ENSMUSG00000021375.11 ENSMUSG00000021375 ENSMUST00000224923 Kif13a protein_coding Interval_11154 chr1 179712729 179713634 + 0 NA intron (ENSMUSG00000087236.3, intron 9 of 22) protein_coding-intron (ENSMUSG00000087236.3, intron 9 of 22) -12901 ENSMUSG00000087236.3 ENSMUSG00000087236 ENSMUST00000223392 Kif28 protein_coding Interval_88222 chr19 60789779 60791469 + 0 NA promoter-TSS (ENSMUSG00000024991.8) protein_coding-promoter-TSS (ENSMUSG00000024991.8) -8434 ENSMUSG00000024991.8 ENSMUSG00000024991 ENSMUST00000236622 Eif3a protein_coding Interval_80385 chr18 40868469 40868680 + 0 NA Intergenic Intergenic -26110 ENSMUSG00000118091.1 ENSMUSG00000118091 ENSMUST00000236004 Gm50407 processed_pseudogene Interval_127353 chr5 103367043 103367682 + 0 NA Intergenic Intergenic -10664 ENSMUSG00000104684.1 ENSMUSG00000104684 ENSMUST00000200007 5430427N15Rik lincRNA Interval_90690 chr2 31924674 31925172 + 0 NA promoter-TSS (ENSMUSG00000026840.14) protein_coding-promoter-TSS (ENSMUSG00000026840.14) -32506 ENSMUSG00000086356.1 ENSMUSG00000086356 ENSMUST00000140104 Gm13441 antisense Interval_97064 chr2 130914633 130915487 + 0 NA intron (ENSMUSG00000027312.14, intron 1 of 2) protein_coding-intron (ENSMUSG00000027312.14, intron 1 of 28) 8129 ENSMUSG00000027312.14 ENSMUSG00000027312 ENSMUST00000151364 Atrn protein_coding Interval_20501 chr10 117994272 117995175 + 0 NA Intergenic Intergenic -10215 ENSMUSG00000102896.1 ENSMUSG00000102896 ENSMUST00000193027 Gm37852 TEC Interval_78780 chr18 20593919 20595781 + 0 NA intron (ENSMUSG00000044393.15, intron 12 of 14) protein_coding-intron (ENSMUSG00000044393.15, intron 12 of 14) 36604 ENSMUSG00000044393.15 ENSMUSG00000044393 ENSMUST00000121837 Dsg2 protein_coding Interval_26658 chr11 59518121 59518589 + 0 NA intron (ENSMUSG00000020472.14, intron 1 of 2) protein_coding-intron (ENSMUSG00000020472.14, intron 1 of 2) 8396 ENSMUSG00000020472.14 ENSMUSG00000020472 ENSMUST00000139707 Zkscan17 protein_coding Interval_110614 chr4 4721639 4722568 + 0 NA Intergenic Intergenic -7470 ENSMUSG00000095971.1 ENSMUSG00000095971 ENSMUST00000180325 Gm26436 snoRNA Interval_118636 chr4 132922084 132923256 + 0 NA promoter-TSS (ENSMUSG00000028878.11) protein_coding-promoter-TSS (ENSMUSG00000028878.11) -1761 ENSMUSG00000028878.11 ENSMUSG00000028878 ENSMUST00000148667 Fam76a protein_coding Interval_60501 chr15 74456547 74456744 + 0 NA Intergenic Intergenic -16201 ENSMUSG00000118581.1 ENSMUSG00000118581 ENSMUST00000239328 AC119183.1 unitary_pseudogene Interval_19566 chr10 103344405 103345193 + 0 NA Intergenic Intergenic -48651 ENSMUSG00000019894.14 ENSMUSG00000019894 ENSMUST00000219936 Slc6a15 protein_coding Interval_65683 chr16 25263218 25264278 + 0 NA Intergenic Intergenic -23073 ENSMUSG00000048399.4 ENSMUSG00000048399 ENSMUST00000128595 Tprg protein_coding Interval_81718 chr18 63880462 63881264 + 0 NA intron (ENSMUSG00000040560.10, intron 20 of 26) protein_coding-intron (ENSMUSG00000040560.10, intron 21 of 27) 18168 ENSMUSG00000118258.1 ENSMUSG00000118258 ENSMUST00000237352 Gm19076 processed_pseudogene Interval_123379 chr5 32017401 32018459 + 0 NA intron (ENSMUSG00000052139.18, intron 10 of 11) protein_coding-intron (ENSMUSG00000052139.18, intron 12 of 13) -7067 ENSMUSG00000106894.1 ENSMUSG00000106894 ENSMUST00000201542 Gm17130 antisense Interval_101835 chr3 9832868 9834387 + 0 NA promoter-TSS (ENSMUSG00000027508.15) protein_coding-promoter-TSS (ENSMUSG00000027508.15) -264 ENSMUSG00000027508.15 ENSMUSG00000027508 ENSMUST00000159497 Pag1 protein_coding Interval_123894 chr5 36359357 36359820 + 0 NA intron (ENSMUSG00000029093.14, intron 1 of 4) protein_coding-intron (ENSMUSG00000029093.14, intron 1 of 26) 6330 ENSMUSG00000029093.14 ENSMUSG00000029093 ENSMUST00000141508 Sorcs2 protein_coding Interval_18651 chr10 88814121 88814519 + 0 NA intron (ENSMUSG00000004356.8, intron 11 of 61) protein_coding-intron (ENSMUSG00000004356.8, intron 11 of 61) 12463 ENSMUSG00000004356.8 ENSMUSG00000004356 ENSMUST00000220439 Utp20 protein_coding Interval_153779 chr8 8466485 8467120 + 0 NA intron (ENSMUSG00000109127.1, intron 1 of 3) lincRNA-intron (ENSMUSG00000109127.1, intron 1 of 3) -11373 ENSMUSG00000108913.1 ENSMUSG00000108913 ENSMUST00000207080 Gm2448 processed_pseudogene Interval_15256 chr10 43847001 43847442 + 0 NA Intergenic Intergenic 20641 ENSMUSG00000111342.1 ENSMUSG00000111342 ENSMUST00000217125 4933404K13Rik lincRNA Interval_6155 chr1 98128103 98128580 + 0 NA Intergenic Intergenic -3115 ENSMUSG00000100182.6 ENSMUSG00000100182 ENSMUST00000186473 1810006J02Rik lincRNA Interval_77915 chr18 5431459 5433179 + 0 NA Intergenic Intergenic -61837 ENSMUSG00000117617.1 ENSMUSG00000117617 ENSMUST00000234572 Gm50065 lincRNA Interval_20538 chr10 118706468 118706704 + 0 NA Intergenic Intergenic 9140 ENSMUSG00000112029.1 ENSMUSG00000112029 ENSMUST00000219594 Gm33337 lincRNA Interval_82689 chr18 75957934 75958183 + 0 NA intron (ENSMUSG00000044646.15, intron 2 of 5) protein_coding-intron (ENSMUSG00000044646.15, intron 2 of 4) 57619 ENSMUSG00000118311.1 ENSMUSG00000118311 ENSMUST00000238127 1700003O11Rik antisense Interval_27455 chr11 67931507 67932896 + 0 NA intron (ENSMUSG00000020904.11, intron 9 of 13) protein_coding-intron (ENSMUSG00000020904.11, intron 9 of 13) 10697 ENSMUSG00000055134.5 ENSMUSG00000055134 ENSMUST00000068548 9130017K11Rik processed_transcript Interval_132427 chr5 144868776 144870210 + 0 NA Intergenic Intergenic 27323 ENSMUSG00000098822.1 ENSMUSG00000098822 ENSMUST00000183852 Mir7039 miRNA Interval_20682 chr10 120208412 120209296 + 0 NA promoter-TSS (ENSMUSG00000020225.10) protein_coding-promoter-TSS (ENSMUSG00000020225.10) -6724 ENSMUSG00000020227.10 ENSMUSG00000020227 ENSMUST00000143100 Irak3 protein_coding Interval_3255 chr1 55198420 55199384 + 0 NA intron (ENSMUSG00000025978.14, intron 5 of 8) protein_coding-intron (ENSMUSG00000025978.14, intron 5 of 8) -27396 ENSMUSG00000097649.2 ENSMUSG00000097649 ENSMUST00000209801 Gm10561 antisense Interval_64275 chr16 10123337 10123885 + 0 NA Intergenic Intergenic -46615 ENSMUSG00000039209.12 ENSMUSG00000039209 ENSMUST00000044103 Rpl39l protein_coding Interval_92250 chr2 57317886 57318627 + 0 NA intron (ENSMUSG00000026827.12, intron 6 of 16) protein_coding-intron (ENSMUSG00000026827.12, intron 6 of 16) -42570 ENSMUSG00000084292.1 ENSMUSG00000084292 ENSMUST00000118714 Gm13535 processed_pseudogene Interval_28430 chr11 75825977 75827566 + 0 NA Intergenic Intergenic -30722 ENSMUSG00000020848.7 ENSMUSG00000020848 ENSMUST00000021209 Doc2b protein_coding Interval_10715 chr1 173436914 173437134 + 0 NA intron (ENSMUSG00000037860.15, intron 2 of 5) protein_coding-intron (ENSMUSG00000037860.15, intron 5 of 11) -18330 ENSMUSG00000037860.15 ENSMUSG00000037860 ENSMUST00000135370 Aim2 protein_coding Interval_7240 chr1 128156449 128157435 + 0 NA intron (ENSMUSG00000056211.13, intron 3 of 11) protein_coding-intron (ENSMUSG00000056211.13, intron 3 of 11) -6272 ENSMUSG00000103497.1 ENSMUSG00000103497 ENSMUST00000194793 Gm37407 TEC Interval_75203 chr17 64649406 64649623 + 0 NA intron (ENSMUSG00000024085.13, intron 4 of 21) protein_coding-intron (ENSMUSG00000024085.13, intron 4 of 21) -64105 ENSMUSG00000024085.13 ENSMUSG00000024085 ENSMUST00000169668 Man2a1 protein_coding Interval_155892 chr8 40715207 40716281 + 0 NA Intergenic Intergenic -2457 ENSMUSG00000110315.1 ENSMUSG00000110315 ENSMUST00000211387 Gm8423 processed_pseudogene Interval_157732 chr8 72579295 72579894 + 0 NA exon (ENSMUSG00000031791.8, exon 2 of 6) protein_coding-exon (ENSMUSG00000031791.8, exon 2 of 6) 7539 ENSMUSG00000031791.8 ENSMUSG00000031791 ENSMUST00000211914 Tmem38a protein_coding Interval_109858 chr3 149069923 149070867 + 0 NA Intergenic Intergenic 41463 ENSMUSG00000065270.1 ENSMUSG00000065270 ENSMUST00000083336 Gm25127 snRNA Interval_144650 chr7 27332574 27332866 + 0 NA intron (ENSMUSG00000040488.18, intron 4 of 32) protein_coding-intron (ENSMUSG00000040488.18, intron 4 of 32) 928 ENSMUSG00000040488.18 ENSMUSG00000040488 ENSMUST00000206413 Ltbp4 protein_coding Interval_42217 chr13 10058516 10059621 + 0 NA intron (ENSMUSG00000046159.16, intron 3 of 4) protein_coding-intron (ENSMUSG00000046159.16, intron 3 of 4) -7220 ENSMUSG00000113502.1 ENSMUSG00000113502 ENSMUST00000222830 Gm47411 TEC Interval_11027 chr1 178506793 178508035 + 0 NA Intergenic Intergenic -21711 ENSMUSG00000026494.12 ENSMUSG00000026494 ENSMUST00000160789 Kif26b protein_coding Interval_147464 chr7 67499459 67499710 + 0 NA Intergenic Intergenic -55651 ENSMUSG00000109329.1 ENSMUSG00000109329 ENSMUST00000208755 Gm33926 lincRNA Interval_16713 chr10 67151383 67152656 + 0 NA intron (ENSMUSG00000037876.17, intron 1 of 25) protein_coding-intron (ENSMUSG00000037876.17, intron 1 of 25) -33729 ENSMUSG00000037876.17 ENSMUSG00000037876 ENSMUST00000173236 Jmjd1c protein_coding Interval_132228 chr5 143474585 143474782 + 0 NA exon (ENSMUSG00000039206.13, exon 4 of 15) protein_coding-exon (ENSMUSG00000039206.13, exon 4 of 15) 1766 ENSMUSG00000039206.13 ENSMUSG00000039206 ENSMUST00000155383 Daglb protein_coding Interval_111706 chr4 26421804 26422361 + 0 NA Intergenic Intergenic -20379 ENSMUSG00000082573.1 ENSMUSG00000082573 ENSMUST00000118958 Gm11903 processed_pseudogene Interval_59637 chr15 57001555 57001947 + 0 NA intron (ENSMUSG00000115172.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000115172.1, intron 1 of 2) 4873 ENSMUSG00000115172.1 ENSMUSG00000115172 ENSMUST00000228364 Gm2582 lincRNA Interval_56125 chr14 106130721 106131094 + 0 NA intron (ENSMUSG00000022113.6, intron 1 of 1) protein_coding-intron (ENSMUSG00000022113.6, intron 1 of 1) 24708 ENSMUSG00000022113.6 ENSMUSG00000022113 ENSMUST00000194236 Trim52 protein_coding Interval_15283 chr10 44074397 44075248 + 0 NA intron (ENSMUSG00000019866.15, intron 1 of 21) protein_coding-intron (ENSMUSG00000019866.15, intron 1 of 21) -16044 ENSMUSG00000019866.15 ENSMUSG00000019866 ENSMUST00000239010 Crybg1 protein_coding Interval_169743 chr9 100904665 100904932 + 0 NA intron (ENSMUSG00000037286.15, intron 14 of 25) protein_coding-intron (ENSMUSG00000037286.15, intron 21 of 32) 27707 ENSMUSG00000103624.1 ENSMUSG00000103624 ENSMUST00000193413 Gm3081 TEC Interval_1669 chr1 30908412 30909509 + 0 NA Intergenic Intergenic 40349 ENSMUSG00000026064.16 ENSMUSG00000026064 ENSMUST00000130934 Ptp4a1 protein_coding Interval_163913 chr9 28338069 28338625 + 0 NA intron (ENSMUSG00000062257.13, intron 1 of 7) protein_coding-intron (ENSMUSG00000062257.13, intron 1 of 7) 45599 ENSMUSG00000106021.1 ENSMUSG00000106021 ENSMUST00000199274 Gm44316 miRNA Interval_119127 chr4 135726648 135728385 + 0 NA promoter-TSS (ENSMUSG00000037157.8) protein_coding-promoter-TSS (ENSMUSG00000037157.8) -656 ENSMUSG00000037157.8 ENSMUSG00000037157 ENSMUST00000102546 Il22ra1 protein_coding Interval_119308 chr4 136776167 136777198 + 0 NA intron (ENSMUSG00000028664.14, intron 1 of 2) protein_coding-intron (ENSMUSG00000028664.14, intron 1 of 15) -82642 ENSMUSG00000028664.14 ENSMUSG00000028664 ENSMUST00000144573 Ephb2 protein_coding Interval_72556 chr17 30650598 30651091 + 0 NA intron (ENSMUSG00000033826.10, intron 7 of 10) protein_coding-intron (ENSMUSG00000033826.10, intron 7 of 92) -19796 ENSMUSG00000033826.10 ENSMUSG00000033826 ENSMUST00000235567 Dnah8 protein_coding Interval_2740 chr1 44054106 44054329 + 0 NA Intergenic Intergenic 25529 ENSMUSG00000091844.2 ENSMUSG00000091844 ENSMUST00000168641 Gm8251 protein_coding Interval_19155 chr10 95194108 95194483 + 0 NA intron (ENSMUSG00000045867.10, intron 1 of 1) protein_coding-intron (ENSMUSG00000045867.10, intron 2 of 2) 33934 ENSMUSG00000112682.1 ENSMUSG00000112682 ENSMUST00000220149 Gm48874 TEC Interval_148511 chr7 81959645 81960029 + 0 NA Intergenic Intergenic -5873 ENSMUSG00000089111.1 ENSMUSG00000089111 ENSMUST00000158486 Gm25907 snoRNA Interval_174622 chrX 160180776 160181647 + 0 NA Intergenic Intergenic -52246 ENSMUSG00000031299.10 ENSMUSG00000031299 ENSMUST00000127535 Pdha1 protein_coding Interval_73477 chr17 37809137 37809658 + 0 NA TTS (ENSMUSG00000044985.6) protein_coding-TTS (ENSMUSG00000044985.6) 8218 ENSMUSG00000044985.6 ENSMUSG00000044985 ENSMUST00000053599 Olfr124 protein_coding Interval_86056 chr19 36082836 36084295 + 0 NA promoter-TSS (ENSMUSG00000024800.8) protein_coding-promoter-TSS (ENSMUSG00000024800.8) -225 ENSMUSG00000024800.8 ENSMUSG00000024800 ENSMUST00000235223 Rpp30 protein_coding Interval_78669 chr18 16678194 16678731 + 0 NA intron (ENSMUSG00000024304.14, intron 2 of 15) protein_coding-intron (ENSMUSG00000024304.14, intron 2 of 15) -50271 ENSMUSG00000085575.1 ENSMUSG00000085575 ENSMUST00000149095 Gm15485 antisense Interval_102703 chr3 30438124 30438341 + 0 NA intron (ENSMUSG00000027684.16, intron 2 of 8) protein_coding-intron (ENSMUSG00000027684.16, intron 1 of 11) -50194 ENSMUSG00000104079.1 ENSMUSG00000104079 ENSMUST00000192224 Gm37024 TEC Interval_26529 chr11 58443320 58443528 + 0 NA Intergenic Intergenic 9499 ENSMUSG00000052642.3 ENSMUSG00000052642 ENSMUST00000064614 Lypd9 protein_coding Interval_120025 chr4 141419346 141420409 + 0 NA promoter-TSS (ENSMUSG00000006221.7) protein_coding-promoter-TSS (ENSMUSG00000006221.7) -902 ENSMUSG00000006221.7 ENSMUSG00000006221 ENSMUST00000102486 Hspb7 protein_coding Interval_162549 chr9 4140382 4140634 + 0 NA Intergenic Intergenic -73414 ENSMUSG00000110691.1 ENSMUSG00000110691 ENSMUST00000211927 Gm5363 processed_pseudogene Interval_124817 chr5 55229786 55229970 + 0 NA Intergenic Intergenic 73703 ENSMUSG00000065795.1 ENSMUSG00000065795 ENSMUST00000083861 Gm25513 snRNA Interval_22527 chr11 11497737 11498397 + 0 NA intron (ENSMUSG00000020191.11, intron 4 of 5) protein_coding-intron (ENSMUSG00000020191.11, intron 7 of 8) -35659 ENSMUSG00000020193.3 ENSMUSG00000020193 ENSMUST00000020413 Zpbp protein_coding Interval_38562 chr12 80146621 80146961 + 0 NA Intergenic Intergenic -14195 ENSMUSG00000097729.2 ENSMUSG00000097729 ENSMUST00000180643 2310015A10Rik processed_transcript Interval_163230 chr9 18743952 18745720 + 0 NA Intergenic Intergenic 19160 ENSMUSG00000054141.5 ENSMUSG00000054141 ENSMUST00000066997 Olfr24 protein_coding Interval_75171 chr17 64292831 64293542 + 0 NA intron (ENSMUSG00000024083.16, intron 4 of 8) protein_coding-intron (ENSMUSG00000024083.16, intron 4 of 8) 28429 ENSMUSG00000080455.1 ENSMUSG00000080455 ENSMUST00000116805 Gm24194 miRNA Interval_90311 chr2 29711635 29712507 + 0 NA intron (ENSMUSG00000039844.20, intron 3 of 15) protein_coding-intron (ENSMUSG00000039844.20, intron 3 of 15) 26594 ENSMUSG00000048316.3 ENSMUSG00000048316 ENSMUST00000051212 Gm9823 pseudogene Interval_30228 chr11 91204584 91205086 + 0 NA Intergenic Intergenic -343487 ENSMUSG00000083764.1 ENSMUSG00000083764 ENSMUST00000118450 Gm11516 processed_pseudogene Interval_86846 chr19 44321534 44322792 + 0 NA Intergenic Intergenic 8391 ENSMUSG00000117957.1 ENSMUSG00000117957 ENSMUST00000238052 Gm50334 lincRNA Interval_76678 chr17 83410360 83410741 + 0 NA intron (ENSMUSG00000032624.16, intron 2 of 22) protein_coding-intron (ENSMUSG00000032624.16, intron 2 of 20) -45751 ENSMUSG00000032624.16 ENSMUSG00000032624 ENSMUST00000235121 Eml4 protein_coding Interval_113987 chr4 62277292 62277873 + 0 NA intron (ENSMUSG00000066152.11, intron 2 of 4) protein_coding-intron (ENSMUSG00000066152.11, intron 2 of 4) 13268 ENSMUSG00000096713.1 ENSMUSG00000096713 ENSMUST00000180367 Gm23148 snRNA Interval_135139 chr6 36650039 36650489 + 0 NA Intergenic Intergenic -9998 ENSMUSG00000106872.1 ENSMUSG00000106872 ENSMUST00000201419 Gm2189 processed_pseudogene Interval_142174 chr6 137796851 137798017 + 0 NA intron (ENSMUSG00000030225.11, intron 6 of 7) protein_coding-intron (ENSMUSG00000030225.11, intron 6 of 8) -38123 ENSMUSG00000030225.11 ENSMUSG00000030225 ENSMUST00000204723 Dera protein_coding Interval_162000 chr8 124349719 124350237 + 0 NA Intergenic Intergenic -7260 ENSMUSG00000064664.1 ENSMUSG00000064664 ENSMUST00000082730 Gm24459 snRNA Interval_21478 chr10 128834197 128834658 + 0 NA intron (ENSMUSG00000078427.3, intron 2 of 11) protein_coding-intron (ENSMUSG00000078427.3, intron 2 of 10) 12495 ENSMUSG00000078427.3 ENSMUSG00000078427 ENSMUST00000220381 Sarnp protein_coding Interval_87011 chr19 45541528 45542361 + 0 NA Intergenic Intergenic 18587 ENSMUSG00000025218.6 ENSMUSG00000025218 ENSMUST00000026239 Poll protein_coding Interval_1093 chr1 15596258 15596488 + 0 NA intron (ENSMUSG00000092083.4, intron 2 of 2) protein_coding-intron (ENSMUSG00000092083.4, intron 1 of 1) 40124 ENSMUSG00000104149.1 ENSMUSG00000104149 ENSMUST00000194564 Gm37138 TEC Interval_81519 chr18 61336745 61337101 + 0 NA intron (ENSMUSG00000033871.14, intron 1 of 11) protein_coding-intron (ENSMUSG00000033871.14, intron 2 of 12) -60890 ENSMUSG00000093026.1 ENSMUSG00000093026 ENSMUST00000175285 Gm25301 miRNA Interval_66751 chr16 37017272 37017866 + 0 NA TTS (ENSMUSG00000034206.15) protein_coding-TTS (ENSMUSG00000034206.15) 5783 ENSMUSG00000034206.15 ENSMUSG00000034206 ENSMUST00000182717 Polq protein_coding Interval_83761 chr19 4438692 4441432 + 0 NA promoter-TSS (ENSMUSG00000041845.11) protein_coding-promoter-TSS (ENSMUSG00000041845.11) -662 ENSMUSG00000041845.11 ENSMUSG00000041845 ENSMUST00000151420 Rhod protein_coding Interval_47884 chr13 94155744 94156521 + 0 NA intron (ENSMUSG00000045312.12, intron 1 of 1) protein_coding-intron (ENSMUSG00000045312.12, intron 2 of 3) -16015 ENSMUSG00000087319.1 ENSMUSG00000087319 ENSMUST00000134284 Gm15907 lincRNA Interval_160995 chr8 116745600 116745914 + 0 NA Intergenic Intergenic -12766 ENSMUSG00000031758.10 ENSMUSG00000031758 ENSMUST00000109102 Cdyl2 protein_coding Interval_93565 chr2 74407303 74407552 + 0 NA Intergenic Intergenic -99710 ENSMUSG00000085405.1 ENSMUSG00000085405 ENSMUST00000153743 4930441J16Rik lincRNA Interval_156394 chr8 47901699 47902005 + 0 NA intron (ENSMUSG00000031563.8, intron 2 of 22) protein_coding-intron (ENSMUSG00000031563.8, intron 2 of 22) 2670 ENSMUSG00000064519.1 ENSMUSG00000064519 ENSMUST00000082585 n-R5s97 rRNA Interval_19392 chr10 98922167 98922875 + 0 NA intron (ENSMUSG00000019943.10, intron 1 of 8) protein_coding-intron (ENSMUSG00000019943.10, intron 1 of 20) -68359 ENSMUSG00000019943.10 ENSMUSG00000019943 ENSMUST00000218419 Atp2b1 protein_coding Interval_52766 chr14 49607467 49609826 + 0 NA Intergenic Intergenic -35328 ENSMUSG00000089187.1 ENSMUSG00000089187 ENSMUST00000158562 Gm22949 miRNA Interval_55143 chr14 78613417 78614058 + 0 NA intron (ENSMUSG00000034731.11, intron 9 of 27) protein_coding-intron (ENSMUSG00000034731.11, intron 11 of 28) 10027 ENSMUSG00000084447.1 ENSMUSG00000084447 ENSMUST00000122498 Gm26251 snoRNA Interval_35879 chr12 31548679 31549141 + 0 NA intron (ENSMUSG00000020651.8, intron 4 of 20) protein_coding-intron (ENSMUSG00000020651.8, intron 4 of 20) -12337 ENSMUSG00000020651.8 ENSMUSG00000020651 ENSMUST00000218992 Slc26a4 protein_coding Interval_83446 chr18 85602064 85602752 + 0 NA Intergenic Intergenic 114317 ENSMUSG00000117854.1 ENSMUSG00000117854 ENSMUST00000237113 Gm7612 processed_pseudogene Interval_153882 chr8 10608359 10609162 + 0 NA intron (ENSMUSG00000039057.11, intron 34 of 34) protein_coding-intron (ENSMUSG00000039057.11, intron 34 of 34) 68153 ENSMUSG00000109258.1 ENSMUSG00000109258 ENSMUST00000208649 5330413D20Rik lincRNA Interval_115709 chr4 102858716 102860386 + 0 NA intron (ENSMUSG00000028524.21, intron 2 of 10) protein_coding-intron (ENSMUSG00000028524.21, intron 2 of 23) 99086 ENSMUSG00000028524.21 ENSMUSG00000028524 ENSMUST00000140676 Sgip1 protein_coding Interval_84696 chr19 15422371 15422632 + 0 NA Intergenic Intergenic -257503 ENSMUSG00000094850.1 ENSMUSG00000094850 ENSMUST00000083389 Gm24319 snRNA Interval_159901 chr8 104981937 104982621 + 0 NA Intergenic Intergenic -2185 ENSMUSG00000110479.1 ENSMUSG00000110479 ENSMUST00000211864 Gm5743 transcribed_unprocessed_pseudogene Interval_8835 chr1 151451993 151452336 + 0 NA exon (ENSMUSG00000053286.11, exon 10 of 15) protein_coding-exon (ENSMUSG00000053286.11, exon 10 of 15) 6859 ENSMUSG00000103928.1 ENSMUSG00000103928 ENSMUST00000192826 Gm37893 TEC Interval_99876 chr2 165467701 165467947 + 0 NA intron (ENSMUSG00000018459.15, intron 1 of 2) protein_coding-intron (ENSMUSG00000018459.15, intron 1 of 12) 5375 ENSMUSG00000018459.15 ENSMUSG00000018459 ENSMUST00000147107 Slc13a3 protein_coding Interval_145485 chr7 35147734 35148071 + 0 NA Intergenic Intergenic -6453 ENSMUSG00000108575.1 ENSMUSG00000108575 ENSMUST00000206742 Gm35665 lincRNA Interval_163452 chr9 21509657 21510862 + 0 NA promoter-TSS (ENSMUSG00000032180.11) protein_coding-promoter-TSS (ENSMUSG00000032180.11) -25 ENSMUSG00000032180.11 ENSMUSG00000032180 ENSMUST00000213167 Tmed1 protein_coding Interval_126410 chr5 88202232 88202526 + 0 NA TTS (ENSMUSG00000106065.1) unprocessed_pseudogene-TTS (ENSMUSG00000106065.1) 5391 ENSMUSG00000106065.1 ENSMUSG00000106065 ENSMUST00000198114 Gm42621 unprocessed_pseudogene Interval_71062 chr17 17590608 17590795 + 0 NA intron (ENSMUSG00000023845.7, intron 1 of 10) protein_coding-intron (ENSMUSG00000023845.7, intron 1 of 17) 4075 ENSMUSG00000116796.1 ENSMUSG00000116796 ENSMUST00000232626 Gm49784 TEC Interval_100063 chr2 166879356 166880320 + 0 NA intron (ENSMUSG00000074582.10, intron 33 of 38) protein_coding-intron (ENSMUSG00000074582.10, intron 33 of 38) -26202 ENSMUSG00000002718.14 ENSMUSG00000002718 ENSMUST00000129061 Cse1l protein_coding Interval_1283 chr1 19178982 19180023 + 0 NA Intergenic Intergenic -25536 ENSMUSG00000100720.1 ENSMUSG00000100720 ENSMUST00000162030 Gm10075 processed_pseudogene Interval_47026 chr13 74456895 74457848 + 0 NA intron (ENSMUSG00000112964.1, intron 1 of 3) lincRNA-intron (ENSMUSG00000112964.1, intron 1 of 3) -13377 ENSMUSG00000112964.1 ENSMUSG00000112964 ENSMUST00000222743 E430024I08Rik lincRNA Interval_42766 chr13 19228553 19228803 + 0 NA Intergenic Intergenic -14167 ENSMUSG00000076750.6 ENSMUSG00000076750 ENSMUST00000103559 Trgv3 TR_V_gene Interval_13307 chr10 14452023 14452202 + 0 NA intron (ENSMUSG00000039116.7, intron 5 of 23) protein_coding-intron (ENSMUSG00000039116.7, intron 5 of 24) -70966 ENSMUSG00000071532.6 ENSMUSG00000071532 ENSMUST00000096020 Gm10335 processed_pseudogene Interval_62396 chr15 91754564 91754773 + 0 NA intron (ENSMUSG00000036273.15, intron 8 of 18) protein_coding-intron (ENSMUSG00000036273.15, intron 31 of 50) -59960 ENSMUSG00000036273.15 ENSMUSG00000036273 ENSMUST00000172797 Lrrk2 protein_coding Interval_131169 chr5 135568874 135569096 + 0 NA TTS (ENSMUSG00000004814.10) protein_coding-TTS (ENSMUSG00000004814.10) 4064 ENSMUSG00000004814.10 ENSMUSG00000004814 ENSMUST00000201401 Ccl24 protein_coding Interval_25675 chr11 50707074 50707393 + 0 NA intron (ENSMUSG00000036545.9, intron 3 of 20) protein_coding-intron (ENSMUSG00000036545.9, intron 3 of 21) 11682 ENSMUSG00000087080.1 ENSMUSG00000087080 ENSMUST00000137567 Gm12199 antisense Interval_47283 chr13 80683253 80683487 + 0 NA Intergenic Intergenic 190361 ENSMUSG00000114528.1 ENSMUSG00000114528 ENSMUST00000223876 Gm46388 processed_pseudogene Interval_27683 chr11 69451857 69453517 + 0 NA intron (ENSMUSG00000005237.14, intron 55 of 85) protein_coding-intron (ENSMUSG00000005237.14, intron 54 of 84) 4139 ENSMUSG00000086591.1 ENSMUSG00000086591 ENSMUST00000124108 Dnah2os antisense Interval_11403 chr1 181722911 181723097 + 0 NA intron (ENSMUSG00000047369.17, intron 51 of 84) protein_coding-intron (ENSMUSG00000047369.17, intron 50 of 83) -32762 ENSMUSG00000103100.1 ENSMUSG00000103100 ENSMUST00000194607 Gm37664 TEC Interval_139456 chr6 100304760 100304951 + 0 NA Intergenic Intergenic -18107 ENSMUSG00000072872.3 ENSMUSG00000072872 ENSMUST00000205164 Rybp protein_coding Interval_61817 chr15 84365636 84367047 + 0 NA Intergenic Intergenic -19562 ENSMUSG00000116442.1 ENSMUSG00000116442 ENSMUST00000230576 Gm5214 processed_pseudogene Interval_15693 chr10 53616690 53617706 + 0 NA intron (ENSMUSG00000058298.10, intron 4 of 7) protein_coding-intron (ENSMUSG00000058298.10, intron 5 of 13) 2829 ENSMUSG00000112332.1 ENSMUSG00000112332 ENSMUST00000219458 4930466K18Rik TEC Interval_168003 chr9 75356608 75356815 + 0 NA Intergenic Intergenic 8953 ENSMUSG00000032191.6 ENSMUSG00000032191 ENSMUST00000034709 Bcl2l10 protein_coding Interval_6125 chr1 97714508 97714706 + 0 NA exon (ENSMUSG00000040648.14, exon 1 of 3) protein_coding-exon (ENSMUSG00000040648.14, exon 1 of 3) 1939 ENSMUSG00000040648.14 ENSMUSG00000040648 ENSMUST00000152788 Ppip5k2 protein_coding Interval_56517 chr14 119735077 119735702 + 0 NA intron (ENSMUSG00000053465.6, intron 1 of 1) protein_coding-intron (ENSMUSG00000053465.6, intron 1 of 1) -13836 ENSMUSG00000100274.1 ENSMUSG00000100274 ENSMUST00000188582 1700006F04Rik sense_intronic Interval_51906 chr14 33712469 33713395 + 0 NA Intergenic Intergenic 68437 ENSMUSG00000064446.1 ENSMUSG00000064446 ENSMUST00000082512 Gm26228 snRNA Interval_63872 chr16 4138418 4138662 + 0 NA intron (ENSMUSG00000022521.10, intron 4 of 30) protein_coding-intron (ENSMUSG00000022521.10, intron 4 of 30) 35096 ENSMUSG00000103937.1 ENSMUSG00000103937 ENSMUST00000195629 Gm37186 TEC Interval_119950 chr4 141086827 141087094 + 0 NA Intergenic Intergenic 2096 ENSMUSG00000082246.1 ENSMUSG00000082246 ENSMUST00000117116 Gm13047 processed_pseudogene Interval_73196 chr17 35526373 35526935 + 0 NA exon (ENSMUSG00000040312.14, exon 11 of 19) protein_coding-exon (ENSMUSG00000040312.14, exon 11 of 19) -6547 ENSMUSG00000024409.8 ENSMUSG00000024409 ENSMUST00000025273 Psors1c2 protein_coding Interval_21109 chr10 126531574 126532439 + 0 NA Intergenic Intergenic 54798 ENSMUSG00000112435.1 ENSMUSG00000112435 ENSMUST00000220216 Gm47965 processed_pseudogene Interval_154256 chr8 13846035 13846311 + 0 NA Intergenic Intergenic -7784 ENSMUSG00000057116.5 ENSMUSG00000057116 ENSMUST00000071308 AF366264 protein_coding Interval_68496 chr16 78236551 78237390 + 0 NA Intergenic Intergenic -3288 ENSMUSG00000077451.1 ENSMUSG00000077451 ENSMUST00000104263 Gm25916 snoRNA Interval_161937 chr8 123891425 123893235 + 0 NA TTS (ENSMUSG00000031972.5) protein_coding-TTS (ENSMUSG00000031972.5) 2421 ENSMUSG00000031972.5 ENSMUSG00000031972 ENSMUST00000212584 Acta1 protein_coding Interval_116537 chr4 115133486 115134667 + 0 NA promoter-TSS (ENSMUSG00000047155.13) protein_coding-promoter-TSS (ENSMUSG00000047155.13) 205 ENSMUSG00000047155.13 ENSMUSG00000047155 ENSMUST00000051400 Cyp4x1 protein_coding Interval_60654 chr15 75948632 75949348 + 0 NA exon (ENSMUSG00000050846.9, exon 2 of 2) protein_coding-exon (ENSMUSG00000050846.9, exon 2 of 2) 8038 ENSMUSG00000050846.9 ENSMUSG00000050846 ENSMUST00000037260 Zfp623 protein_coding Interval_12015 chr1 188860387 188861113 + 0 NA intron (ENSMUSG00000026609.15, intron 57 of 70) protein_coding-intron (ENSMUSG00000026609.15, intron 57 of 70) 100274 ENSMUSG00000084550.1 ENSMUSG00000084550 ENSMUST00000122601 Gm25269 snRNA Interval_158058 chr8 78464411 78464882 + 0 NA Intergenic Intergenic 21764 ENSMUSG00000110057.1 ENSMUSG00000110057 ENSMUST00000209570 Gm2225 processed_pseudogene Interval_51796 chr14 32245750 32245965 + 0 NA intron (ENSMUSG00000021911.16, intron 6 of 14) protein_coding-intron (ENSMUSG00000021911.16, intron 9 of 17) 15011 ENSMUSG00000115833.1 ENSMUSG00000115833 ENSMUST00000228947 Gm49196 processed_pseudogene Interval_136549 chr6 55464647 55464935 + 0 NA intron (ENSMUSG00000029778.12, intron 2 of 12) protein_coding-intron (ENSMUSG00000029778.12, intron 3 of 16) 4555 ENSMUSG00000029778.12 ENSMUSG00000029778 ENSMUST00000165786 Adcyap1r1 protein_coding Interval_20263 chr10 116521644 116521949 + 0 NA intron (ENSMUSG00000020166.15, intron 2 of 5) protein_coding-intron (ENSMUSG00000020166.15, intron 2 of 5) 9944 ENSMUSG00000093404.1 ENSMUSG00000093404 ENSMUST00000176664 Gm25190 miRNA Interval_110053 chr3 152797559 152797845 + 0 NA intron (ENSMUSG00000039047.17, intron 10 of 14) protein_coding-intron (ENSMUSG00000039047.17, intron 10 of 14) -15641 ENSMUSG00000090095.1 ENSMUSG00000090095 ENSMUST00000161849 Rpl29-ps1 processed_pseudogene Interval_165572 chr9 49658141 49658908 + 0 NA intron (ENSMUSG00000039542.16, intron 1 of 1) protein_coding-intron (ENSMUSG00000039542.16, intron 1 of 15) 140236 ENSMUSG00000079564.3 ENSMUSG00000079564 ENSMUST00000215070 Gm11149 antisense Interval_109987 chr3 152311634 152312017 + 0 NA intron (ENSMUSG00000054942.13, intron 1 of 2) protein_coding-intron (ENSMUSG00000054942.13, intron 7 of 13) 28559 ENSMUSG00000054942.13 ENSMUSG00000054942 ENSMUST00000200241 Miga1 protein_coding Interval_27393 chr11 67258774 67259394 + 0 NA exon (ENSMUSG00000057003.12, exon 37 of 39) protein_coding-exon (ENSMUSG00000057003.12, exon 37 of 39) 18487 ENSMUSG00000057003.12 ENSMUSG00000057003 ENSMUST00000170942 Myh4 protein_coding Interval_117139 chr4 119933302 119933577 + 0 NA intron (ENSMUSG00000028634.17, intron 1 of 1) protein_coding-intron (ENSMUSG00000028634.17, intron 1 of 8) -99327 ENSMUSG00000028634.17 ENSMUSG00000028634 ENSMUST00000166542 Hivep3 protein_coding Interval_687 chr1 9908556 9909498 + 0 NA intron (ENSMUSG00000046101.16, intron 1 of 13) protein_coding-intron (ENSMUSG00000046101.16, intron 1 of 9) -23093 ENSMUSG00000046101.16 ENSMUSG00000046101 ENSMUST00000183059 Mcmdc2 protein_coding Interval_158103 chr8 78741752 78742706 + 0 NA Intergenic Intergenic 32316 ENSMUSG00000112190.1 ENSMUSG00000112190 ENSMUST00000218647 Gm47209 unitary_pseudogene Interval_94640 chr2 92934462 92934948 + 0 NA intron (ENSMUSG00000027220.2, intron 1 of 5) protein_coding-intron (ENSMUSG00000027220.2, intron 1 of 5) 19607 ENSMUSG00000027220.2 ENSMUSG00000027220 ENSMUST00000028648 Syt13 protein_coding Interval_151404 chr7 122111411 122111760 + 0 NA TTS (ENSMUSG00000044702.13) protein_coding-TTS (ENSMUSG00000044702.13) -9879 ENSMUSG00000030869.11 ENSMUSG00000030869 ENSMUST00000146022 Ndufab1 protein_coding Interval_161863 chr8 123283950 123284758 + 0 NA intron (ENSMUSG00000032815.16, intron 27 of 42) protein_coding-intron (ENSMUSG00000032815.16, intron 27 of 42) -14058 ENSMUSG00000032815.16 ENSMUSG00000032815 ENSMUST00000150318 Fanca protein_coding Interval_118459 chr4 131783785 131784276 + 0 NA intron (ENSMUSG00000028909.17, intron 19 of 19) protein_coding-intron (ENSMUSG00000028909.17, intron 19 of 30) 14340 ENSMUSG00000028909.17 ENSMUSG00000028909 ENSMUST00000139641 Ptpru protein_coding Interval_154049 chr8 12240089 12240292 + 0 NA Intergenic Intergenic -38629 ENSMUSG00000074473.1 ENSMUSG00000074473 ENSMUST00000098935 A230072I06Rik protein_coding Interval_143577 chr7 12935140 12936310 + 0 NA Intergenic Intergenic 4951 ENSMUSG00000065006.1 ENSMUSG00000065006 ENSMUST00000083072 Gm26325 snRNA Interval_141612 chr6 131316221 131317007 + 0 NA promoter-TSS (ENSMUSG00000032899.14) protein_coding-promoter-TSS (ENSMUSG00000032899.14) -24276 ENSMUSG00000107658.1 ENSMUSG00000107658 ENSMUST00000203734 Gm44958 processed_pseudogene Interval_172569 chrX 36836962 36837526 + 0 NA intron (ENSMUSG00000006423.15, intron 6 of 6) protein_coding-intron (ENSMUSG00000006423.15, intron 6 of 6) 2049 ENSMUSG00000084265.1 ENSMUSG00000084265 ENSMUST00000118985 Gm14541 processed_pseudogene Interval_111035 chr4 11389281 11389707 + 0 NA Intergenic Intergenic -3100 ENSMUSG00000040728.15 ENSMUSG00000040728 ENSMUST00000155519 Esrp1 protein_coding Interval_14835 chr10 40371662 40372502 + 0 NA intron (ENSMUSG00000038481.13, intron 1 of 11) protein_coding-intron (ENSMUSG00000038481.13, intron 1 of 12) -21979 ENSMUSG00000038491.9 ENSMUSG00000038491 ENSMUST00000044774 Cdk19os antisense Interval_31929 chr11 103920467 103920842 + 0 NA intron (ENSMUSG00000034187.18, intron 4 of 8) protein_coding-intron (ENSMUSG00000034187.18, intron 4 of 20) -40411 ENSMUSG00000092540.1 ENSMUSG00000092540 ENSMUST00000172606 Gm8738 processed_pseudogene Interval_62642 chr15 95885229 95886745 + 0 NA intron (ENSMUSG00000064210.7, intron 3 of 20) protein_coding-intron (ENSMUSG00000064210.7, intron 2 of 19) -6170 ENSMUSG00000092978.1 ENSMUSG00000092978 ENSMUST00000175237 Gm25070 miRNA Interval_162070 chr8 124862386 124863880 + 0 NA promoter-TSS (ENSMUSG00000031984.8) protein_coding-promoter-TSS (ENSMUSG00000031984.8) -168 ENSMUSG00000031984.8 ENSMUSG00000031984 ENSMUST00000212808 2810004N23Rik protein_coding Interval_14285 chr10 30419359 30419813 + 0 NA Intergenic Intergenic 46668 ENSMUSG00000111047.1 ENSMUSG00000111047 ENSMUST00000213206 Gm4780 transcribed_processed_pseudogene Interval_120706 chr4 150209651 150210005 + 0 NA Intergenic Intergenic -13705 ENSMUSG00000028972.11 ENSMUSG00000028972 ENSMUST00000126449 Car6 protein_coding Interval_97716 chr2 143191394 143191640 + 0 NA Intergenic Intergenic -39887 ENSMUSG00000083047.1 ENSMUSG00000083047 ENSMUST00000118582 Gm14082 processed_pseudogene Interval_21667 chr11 3572381 3573833 + 0 NA Intergenic Intergenic -33815 ENSMUSG00000020439.17 ENSMUSG00000020439 ENSMUST00000151804 Smtn protein_coding Interval_131176 chr5 135616034 135616665 + 0 NA exon (ENSMUSG00000107029.1, exon 1 of 1) TEC-exon (ENSMUSG00000107029.1, exon 1 of 1) 950 ENSMUSG00000107029.1 ENSMUSG00000107029 ENSMUST00000201893 Gm43123 TEC Interval_106049 chr3 91847541 91847950 + 0 NA Intergenic Intergenic 163120 ENSMUSG00000077085.1 ENSMUSG00000077085 ENSMUST00000103897 Gm23697 miRNA Interval_121059 chr4 152514735 152514984 + 0 NA intron (ENSMUSG00000039577.17, intron 8 of 28) protein_coding-intron (ENSMUSG00000039577.17, intron 8 of 28) 36681 ENSMUSG00000039577.17 ENSMUSG00000039577 ENSMUST00000123635 Nphp4 protein_coding Interval_908 chr1 13103380 13105226 + 0 NA Intergenic Intergenic 22860 ENSMUSG00000042414.7 ENSMUSG00000042414 ENSMUST00000047577 Prdm14 protein_coding Interval_87231 chr19 47083952 47084425 + 0 NA TTS (ENSMUSG00000025049.6) protein_coding-TTS (ENSMUSG00000025049.6) 6446 ENSMUSG00000071528.4 ENSMUSG00000071528 ENSMUST00000236170 Atp5md protein_coding Interval_141948 chr6 135747953 135749011 + 0 NA intron (ENSMUSG00000030209.14, intron 11 of 14) protein_coding-intron (ENSMUSG00000030209.14, intron 10 of 13) 7485 ENSMUSG00000089263.1 ENSMUSG00000089263 ENSMUST00000158638 Gm22892 miRNA Interval_62536 chr15 94485986 94486520 + 0 NA Intergenic Intergenic 57240 ENSMUSG00000033356.3 ENSMUSG00000033356 ENSMUST00000134061 Pus7l protein_coding Interval_5483 chr1 89152878 89153534 + 0 NA exon (ENSMUSG00000036206.12, exon 6 of 6) protein_coding-exon (ENSMUSG00000036206.12, exon 6 of 6) 56133 ENSMUSG00000102700.1 ENSMUSG00000102700 ENSMUST00000195426 Gm38312 TEC Interval_117927 chr4 127127258 127127843 + 0 NA intron (ENSMUSG00000070737.10, intron 1 of 2) protein_coding-intron (ENSMUSG00000070737.10, intron 1 of 2) 3859 ENSMUSG00000070737.10 ENSMUSG00000070737 ENSMUST00000094712 Tmem35b protein_coding Interval_39117 chr12 85192387 85193345 + 0 NA Intergenic Intergenic -5061 ENSMUSG00000113681.1 ENSMUSG00000113681 ENSMUST00000221330 Gm45930 processed_pseudogene Interval_62280 chr15 89419733 89420072 + 0 NA exon (ENSMUSG00000116461.1, exon 21 of 27) protein_coding-exon (ENSMUSG00000116461.1, exon 21 of 27) 1499 ENSMUSG00000078937.8 ENSMUSG00000078937 ENSMUST00000168376 Cpt1b protein_coding Interval_77750 chr17 94877486 94877864 + 0 NA TTS (ENSMUSG00000095193.2) lincRNA-TTS (ENSMUSG00000095193.2) -7687 ENSMUSG00000065658.1 ENSMUSG00000065658 ENSMUST00000083724 Gm23102 snRNA Interval_124462 chr5 48339283 48339503 + 0 NA intron (ENSMUSG00000029089.8, intron 1 of 6) protein_coding-intron (ENSMUSG00000029089.8, intron 1 of 6) 14781 ENSMUSG00000106604.1 ENSMUSG00000106604 ENSMUST00000197312 Gm42535 TEC Interval_61810 chr15 84303349 84303591 + 0 NA intron (ENSMUSG00000022438.6, intron 9 of 12) protein_coding-intron (ENSMUSG00000022438.6, intron 9 of 12) 19882 ENSMUSG00000089267.1 ENSMUSG00000089267 ENSMUST00000158642 Gm22890 snoRNA Interval_46625 chr13 67723427 67724864 + 0 NA TTS (ENSMUSG00000114887.1) processed_pseudogene-TTS (ENSMUSG00000114887.1) 149 ENSMUSG00000071281.12 ENSMUSG00000071281 ENSMUST00000127979 Zfp65 protein_coding Interval_14293 chr10 30537925 30538669 + 0 NA intron (ENSMUSG00000019792.8, intron 10 of 10) protein_coding-intron (ENSMUSG00000019792.8, intron 12 of 12) -6267 ENSMUSG00000111211.1 ENSMUSG00000111211 ENSMUST00000214092 Gm48233 TEC Interval_19936 chr10 111376999 111378853 + 0 NA Intergenic Intergenic 40802 ENSMUSG00000112246.1 ENSMUSG00000112246 ENSMUST00000219123 Gm40761 lincRNA Interval_123167 chr5 30265162 30265583 + 0 NA exon (ENSMUSG00000075703.15, exon 8 of 9) protein_coding-exon (ENSMUSG00000075703.15, exon 8 of 9) -24924 ENSMUSG00000085099.1 ENSMUSG00000085099 ENSMUST00000137940 Gm16288 processed_pseudogene Interval_11730 chr1 184956888 184957153 + 0 NA intron (ENSMUSG00000026620.11, intron 1 of 17) protein_coding-intron (ENSMUSG00000026620.11, intron 1 of 17) 33884 ENSMUSG00000102784.1 ENSMUSG00000102784 ENSMUST00000192968 Gm38251 antisense Interval_14440 chr10 33763236 33763731 + 0 NA Intergenic Intergenic 23221 ENSMUSG00000090298.2 ENSMUSG00000090298 ENSMUST00000223295 Sult3a2 protein_coding Interval_127652 chr5 106274519 106275427 + 0 NA Intergenic Intergenic 2763 ENSMUSG00000106669.1 ENSMUSG00000106669 ENSMUST00000196978 Gm38433 processed_pseudogene Interval_90079 chr2 27769734 27769950 + 0 NA Intergenic Intergenic 44623 ENSMUSG00000015846.15 ENSMUSG00000015846 ENSMUST00000148756 Rxra protein_coding Interval_55809 chr14 100384864 100385547 + 0 NA Intergenic Intergenic -33278 ENSMUSG00000094585.1 ENSMUSG00000094585 ENSMUST00000104165 Gm26367 snoRNA Interval_102739 chr3 30702399 30702997 + 0 NA Intergenic Intergenic -2930 ENSMUSG00000074653.10 ENSMUSG00000074653 ENSMUST00000130731 Lrrc31 protein_coding Interval_112638 chr4 43730225 43731390 + 0 NA exon (ENSMUSG00000028475.9, exon 2 of 2) protein_coding-exon (ENSMUSG00000028475.9, exon 2 of 2) -1452 ENSMUSG00000028475.9 ENSMUSG00000028475 ENSMUST00000142309 Spaar protein_coding Interval_19691 chr10 108113030 108114107 + 0 NA Intergenic Intergenic 28864 ENSMUSG00000112401.1 ENSMUSG00000112401 ENSMUST00000219675 Gm47999 processed_pseudogene Interval_34151 chr11 120924431 120924614 + 0 NA intron (ENSMUSG00000048445.6, intron 1 of 18) protein_coding-intron (ENSMUSG00000048445.6, intron 1 of 18) -24559 ENSMUSG00000025161.16 ENSMUSG00000025161 ENSMUST00000134540 Slc16a3 protein_coding Interval_85102 chr19 22872695 22873010 + 0 NA intron (ENSMUSG00000052387.16, intron 4 of 21) protein_coding-intron (ENSMUSG00000052387.16, intron 9 of 26) 122247 ENSMUSG00000065507.3 ENSMUSG00000065507 ENSMUST00000083573 Mir204 miRNA Interval_165054 chr9 44171247 44172044 + 0 NA intron (ENSMUSG00000034342.9, intron 3 of 15) protein_coding-intron (ENSMUSG00000034342.9, intron 3 of 14) -9030 ENSMUSG00000110966.1 ENSMUSG00000110966 ENSMUST00000214044 Gm47255 processed_pseudogene Interval_153595 chr8 3604597 3604867 + 0 NA exon (ENSMUSG00000044433.16, exon 11 of 17) protein_coding-exon (ENSMUSG00000044433.16, exon 11 of 17) -10797 ENSMUSG00000084603.1 ENSMUSG00000084603 ENSMUST00000122654 Gm22204 misc_RNA Interval_28942 chr11 79425635 79428359 + 0 NA intron (ENSMUSG00000020716.16, intron 14 of 30) protein_coding-intron (ENSMUSG00000020716.16, intron 13 of 57) 25450 ENSMUSG00000082529.1 ENSMUSG00000082529 ENSMUST00000118691 Gm11199 processed_pseudogene Interval_149708 chr7 100826484 100826704 + 0 NA intron (ENSMUSG00000029461.17, intron 4 of 5) protein_coding-intron (ENSMUSG00000029461.17, intron 5 of 8) 15242 ENSMUSG00000109109.1 ENSMUSG00000109109 ENSMUST00000208745 Gm44953 TEC Interval_157435 chr8 70347968 70348164 + 0 NA intron (ENSMUSG00000058301.8, intron 1 of 23) protein_coding-intron (ENSMUSG00000058301.8, intron 1 of 23) 5145 ENSMUSG00000058301.8 ENSMUSG00000058301 ENSMUST00000075666 Upf1 protein_coding Interval_92621 chr2 61610296 61610940 + 0 NA intron (ENSMUSG00000064289.15, intron 2 of 8) protein_coding-intron (ENSMUSG00000064289.15, intron 1 of 7) -33213 ENSMUSG00000064289.15 ENSMUSG00000064289 ENSMUST00000154693 Tank protein_coding Interval_102324 chr3 21924417 21924716 + 0 NA Intergenic Intergenic 73902 ENSMUSG00000106321.1 ENSMUSG00000106321 ENSMUST00000196313 Gm43674 lincRNA Interval_111558 chr4 23220201 23220427 + 0 NA Intergenic Intergenic -40470 ENSMUSG00000087098.1 ENSMUSG00000087098 ENSMUST00000131639 Gm11884 lincRNA Interval_74730 chr17 56194525 56195621 + 0 NA intron (ENSMUSG00000001229.9, intron 10 of 18) protein_coding-intron (ENSMUSG00000001229.9, intron 13 of 20) -11409 ENSMUSG00000019579.13 ENSMUSG00000019579 ENSMUST00000151093 Mydgf protein_coding Interval_70394 chr17 9726173 9726855 + 0 NA promoter-TSS (ENSMUSG00000117341.1) lincRNA-promoter-TSS (ENSMUSG00000117341.1) -161 ENSMUSG00000117341.1 ENSMUSG00000117341 ENSMUST00000233960 Gm34684 lincRNA Interval_111074 chr4 11633409 11633685 + 0 NA Intergenic Intergenic 16952 ENSMUSG00000084046.1 ENSMUSG00000084046 ENSMUST00000118393 Gm11833 processed_pseudogene Interval_145714 chr7 37623873 37625425 + 0 NA intron (ENSMUSG00000043456.17, intron 3 of 3) protein_coding-intron (ENSMUSG00000043456.17, intron 3 of 5) 37989 ENSMUSG00000108572.1 ENSMUSG00000108572 ENSMUST00000206063 Gm44883 TEC Interval_137793 chr6 82545781 82546163 + 0 NA intron (ENSMUSG00000030043.11, intron 2 of 4) protein_coding-intron (ENSMUSG00000030043.11, intron 3 of 5) -134160 ENSMUSG00000107453.1 ENSMUSG00000107453 ENSMUST00000203711 Gm44145 antisense Interval_118430 chr4 131461487 131462053 + 0 NA Intergenic Intergenic -25427 ENSMUSG00000078531.3 ENSMUSG00000078531 ENSMUST00000149942 Gm831 lincRNA Interval_74692 chr17 55990298 55991094 + 0 NA TTS (ENSMUSG00000011589.9) protein_coding-TTS (ENSMUSG00000011589.9) -4714 ENSMUSG00000011589.9 ENSMUSG00000011589 ENSMUST00000233361 Fsd1 protein_coding Interval_89372 chr2 20131234 20133112 + 0 NA intron (ENSMUSG00000036617.17, intron 2 of 7) protein_coding-intron (ENSMUSG00000036617.17, intron 2 of 7) -94279 ENSMUSG00000082164.1 ENSMUSG00000082164 ENSMUST00000121607 Gm13360 processed_pseudogene Interval_46707 chr13 69521381 69521568 + 0 NA intron (ENSMUSG00000034575.13, intron 1 of 12) protein_coding-intron (ENSMUSG00000034575.13, intron 1 of 12) 7474 ENSMUSG00000113486.1 ENSMUSG00000113486 ENSMUST00000221578 Gm48676 processed_pseudogene Interval_163681 chr9 24280803 24281014 + 0 NA intron (ENSMUSG00000043659.11, intron 4 of 5) protein_coding-intron (ENSMUSG00000043659.11, intron 4 of 9) -2525 ENSMUSG00000043659.11 ENSMUSG00000043659 ENSMUST00000154337 Npsr1 protein_coding Interval_112962 chr4 46485587 46486166 + 0 NA Intergenic Intergenic -3498 ENSMUSG00000028334.10 ENSMUSG00000028334 ENSMUST00000137874 Nans protein_coding Interval_85662 chr19 29464876 29465594 + 0 NA intron (ENSMUSG00000097855.8, intron 5 of 5) protein_coding-intron (ENSMUSG00000016498.10, intron 5 of 5) 43176 ENSMUSG00000016498.10 ENSMUSG00000016498 ENSMUST00000235164 Pdcd1lg2 protein_coding Interval_129736 chr5 122043146 122044038 + 0 NA intron (ENSMUSG00000042589.18, intron 1 of 6) protein_coding-intron (ENSMUSG00000042589.18, intron 2 of 22) -4790 ENSMUSG00000087386.1 ENSMUSG00000087386 ENSMUST00000135544 Gm15637 antisense Interval_50743 chr14 18831807 18832630 + 0 NA TTS (ENSMUSG00000083606.3) processed_pseudogene-TTS (ENSMUSG00000083606.3) 922 ENSMUSG00000083606.3 ENSMUSG00000083606 ENSMUST00000118355 Gm15916 processed_pseudogene Interval_71283 chr17 21876959 21877265 + 0 NA Intergenic Intergenic -31340 ENSMUSG00000069743.5 ENSMUSG00000069743 ENSMUST00000232918 Zfp820 protein_coding Interval_97390 chr2 135711321 135712139 + 0 NA intron (ENSMUSG00000039943.16, intron 1 of 2) protein_coding-intron (ENSMUSG00000039943.16, intron 1 of 28) -18576 ENSMUSG00000085709.1 ENSMUSG00000085709 ENSMUST00000152250 Gm14211 lincRNA Interval_94389 chr2 90686034 90686243 + 0 NA intron (ENSMUSG00000051329.13, intron 1 of 3) protein_coding-intron (ENSMUSG00000051329.13, intron 5 of 36) 967 ENSMUSG00000051329.13 ENSMUSG00000051329 ENSMUST00000126503 Nup160 protein_coding Interval_81618 chr18 62179373 62180622 + 0 NA promoter-TSS (ENSMUSG00000045730.4) protein_coding-promoter-TSS (ENSMUSG00000045730.4) -38 ENSMUSG00000045730.4 ENSMUSG00000045730 ENSMUST00000053640 Adrb2 protein_coding Interval_123895 chr5 36361707 36362264 + 0 NA intron (ENSMUSG00000029093.14, intron 1 of 4) protein_coding-intron (ENSMUSG00000029093.14, intron 1 of 26) 3933 ENSMUSG00000029093.14 ENSMUSG00000029093 ENSMUST00000141508 Sorcs2 protein_coding Interval_85020 chr19 21601444 21602220 + 0 NA intron (ENSMUSG00000035171.9, intron 1 of 2) protein_coding-intron (ENSMUSG00000035171.9, intron 1 of 2) 49628 ENSMUSG00000079382.3 ENSMUSG00000079382 ENSMUST00000112772 Gm3443 transcribed_unitary_pseudogene Interval_52989 chr14 52786760 52786993 + 0 NA Intergenic Intergenic -5440 ENSMUSG00000096478.3 ENSMUSG00000096478 ENSMUST00000178426 Trav9d-1 TR_V_gene Interval_37490 chr12 69333308 69333836 + 0 NA intron (ENSMUSG00000020982.9, intron 5 of 11) protein_coding-intron (ENSMUSG00000020982.9, intron 16 of 32) 23566 ENSMUSG00000020982.9 ENSMUSG00000020982 ENSMUST00000222065 Nemf protein_coding Interval_19181 chr10 95331145 95332827 + 0 NA Intergenic Intergenic -8299 ENSMUSG00000045867.10 ENSMUSG00000045867 ENSMUST00000220446 Cradd protein_coding Interval_14002 chr10 25398726 25399172 + 0 NA intron (ENSMUSG00000019978.16, intron 1 of 10) protein_coding-intron (ENSMUSG00000019978.16, intron 1 of 19) 17236 ENSMUSG00000112445.1 ENSMUSG00000112445 ENSMUST00000219193 Gm47830 processed_pseudogene Interval_106696 chr3 99140721 99141885 + 0 NA intron (ENSMUSG00000004233.14, intron 1 of 3) protein_coding-intron (ENSMUSG00000004233.14, intron 1 of 5) 207 ENSMUSG00000004233.14 ENSMUSG00000004233 ENSMUST00000126875 Wars2 protein_coding Interval_104813 chr3 74666564 74667928 + 0 NA Intergenic Intergenic -147472 ENSMUSG00000102809.1 ENSMUSG00000102809 ENSMUST00000195228 Gm8643 processed_pseudogene Interval_22718 chr11 13858379 13858550 + 0 NA Intergenic Intergenic -303615 ENSMUSG00000081631.1 ENSMUSG00000081631 ENSMUST00000121451 Gm12005 processed_pseudogene Interval_80541 chr18 43606146 43607152 + 0 NA intron (ENSMUSG00000024502.10, intron 1 of 1) protein_coding-intron (ENSMUSG00000024502.10, intron 1 of 21) -66038 ENSMUSG00000024502.10 ENSMUSG00000024502 ENSMUST00000237069 Jakmip2 protein_coding Interval_10314 chr1 168431512 168432733 + 0 NA promoter-TSS (ENSMUSG00000052534.15) protein_coding-promoter-TSS (ENSMUSG00000052534.15) 148 ENSMUSG00000052534.15 ENSMUSG00000052534 ENSMUST00000176791 Pbx1 protein_coding Interval_147962 chr7 75907205 75907439 + 0 NA Intergenic Intergenic 58925 ENSMUSG00000055652.14 ENSMUSG00000055652 ENSMUST00000205887 Klhl25 protein_coding Interval_106798 chr3 100931780 100933184 + 0 NA TTS (ENSMUSG00000033233.17) protein_coding-TTS (ENSMUSG00000033233.17) 9570 ENSMUSG00000033233.17 ENSMUSG00000033233 ENSMUST00000134993 Trim45 protein_coding Interval_127144 chr5 100595217 100595424 + 0 NA Intergenic Intergenic -2564 ENSMUSG00000104993.1 ENSMUSG00000104993 ENSMUST00000197922 Gm43510 processed_pseudogene Interval_149719 chr7 100917914 100918899 + 0 NA intron (ENSMUSG00000032875.8, intron 1 of 20) protein_coding-intron (ENSMUSG00000032875.8, intron 1 of 20) -23716 ENSMUSG00000032875.8 ENSMUSG00000032875 ENSMUST00000208735 Arhgef17 protein_coding Interval_90472 chr2 30682533 30682770 + 0 NA intron (ENSMUSG00000086405.1, intron 2 of 3) lincRNA-intron (ENSMUSG00000086405.1, intron 2 of 3) -12743 ENSMUSG00000087268.1 ENSMUSG00000087268 ENSMUST00000144704 Gm14486 lincRNA Interval_9968 chr1 164439606 164439854 + 0 NA intron (ENSMUSG00000026576.12, intron 4 of 5) protein_coding-intron (ENSMUSG00000026576.12, intron 4 of 5) 3989 ENSMUSG00000026576.12 ENSMUSG00000026576 ENSMUST00000192522 Atp1b1 protein_coding Interval_152277 chr7 131317188 131318158 + 0 NA intron (ENSMUSG00000040205.8, intron 3 of 8) protein_coding-intron (ENSMUSG00000040205.8, intron 3 of 8) 4619 ENSMUSG00000040205.8 ENSMUSG00000040205 ENSMUST00000046611 Cuzd1 protein_coding Interval_142705 chr6 145068959 145070989 + 0 NA intron (ENSMUSG00000030268.17, intron 1 of 10) protein_coding-intron (ENSMUSG00000030268.17, intron 1 of 9) 13585 ENSMUSG00000086643.1 ENSMUSG00000086643 ENSMUST00000141440 Gm15687 antisense Interval_130926 chr5 134090988 134091725 + 0 NA promoter-TSS (ENSMUSG00000106800.1) TEC-promoter-TSS (ENSMUSG00000106800.1) 95 ENSMUSG00000106800.1 ENSMUSG00000106800 ENSMUST00000202497 1700030N18Rik TEC Interval_160847 chr8 113687977 113688408 + 0 NA Intergenic Intergenic -11734 ENSMUSG00000110582.1 ENSMUSG00000110582 ENSMUST00000211951 Gm30052 lincRNA Interval_152575 chr7 134725122 134725976 + 0 NA intron (ENSMUSG00000058325.6, intron 2 of 20) protein_coding-intron (ENSMUSG00000058325.6, intron 2 of 51) 54862 ENSMUSG00000058325.6 ENSMUSG00000058325 ENSMUST00000210121 Dock1 protein_coding Interval_157327 chr8 69328531 69329635 + 0 NA promoter-TSS (ENSMUSG00000110514.1) processed_pseudogene-promoter-TSS (ENSMUSG00000110514.1) -135 ENSMUSG00000110514.1 ENSMUSG00000110514 ENSMUST00000212857 Gm7688 processed_pseudogene Interval_172865 chrX 52343232 52343945 + 0 NA intron (ENSMUSG00000055653.13, intron 6 of 7) protein_coding-intron (ENSMUSG00000055653.13, intron 6 of 7) 34593 ENSMUSG00000105738.1 ENSMUSG00000105738 ENSMUST00000196833 Mir6384 miRNA Interval_20693 chr10 120260905 120261233 + 0 NA Intergenic Intergenic -20171 ENSMUSG00000112322.1 ENSMUSG00000112322 ENSMUST00000219103 Gm48115 TEC Interval_146328 chr7 45360834 45361980 + 0 NA intron (ENSMUSG00000003863.18, intron 2 of 29) protein_coding-intron (ENSMUSG00000003863.18, intron 2 of 29) -4756 ENSMUSG00000091510.4 ENSMUSG00000091510 ENSMUST00000058665 Mtag2 antisense Interval_98949 chr2 156270278 156270473 + 0 NA intron (ENSMUSG00000038116.16, intron 5 of 16) protein_coding-intron (ENSMUSG00000038116.16, intron 6 of 17) 42372 ENSMUSG00000046229.10 ENSMUSG00000046229 ENSMUST00000079125 Scand1 protein_coding Interval_102690 chr3 30080596 30081352 + 0 NA intron (ENSMUSG00000027684.16, intron 2 of 2) protein_coding-intron (ENSMUSG00000027684.16, intron 1 of 14) 63446 ENSMUSG00000085702.8 ENSMUSG00000085702 ENSMUST00000173827 Mecomos antisense Interval_128741 chr5 115027150 115028537 + 0 NA intron (ENSMUSG00000029550.11, intron 2 of 2) protein_coding-intron (ENSMUSG00000029550.11, intron 1 of 10) -11927 ENSMUSG00000107054.1 ENSMUSG00000107054 ENSMUST00000201944 C730045M19Rik TEC Interval_86625 chr19 42135644 42137029 + 0 NA Intergenic Intergenic -7347 ENSMUSG00000018821.3 ENSMUSG00000018821 ENSMUST00000161873 Avpi1 protein_coding Interval_3492 chr1 58911529 58911892 + 0 NA exon (ENSMUSG00000026028.12, exon 12 of 16) protein_coding-exon (ENSMUSG00000026028.12, exon 12 of 16) 9987 ENSMUSG00000026028.12 ENSMUSG00000026028 ENSMUST00000173719 Trak2 protein_coding Interval_154721 chr8 22850022 22850462 + 0 NA Intergenic Intergenic -9293 ENSMUSG00000031540.14 ENSMUSG00000031540 ENSMUST00000130718 Kat6a protein_coding Interval_84020 chr19 6158201 6158930 + 0 NA intron (ENSMUSG00000039699.14, intron 1 of 3) protein_coding-intron (ENSMUSG00000039699.14, intron 1 of 3) 5850 ENSMUSG00000083458.1 ENSMUSG00000083458 ENSMUST00000117826 Gm5510 processed_pseudogene Interval_27959 chr11 71564575 71565057 + 0 NA intron (ENSMUSG00000111450.1, intron 3 of 5) lincRNA-intron (ENSMUSG00000072753.12, intron 5 of 5) 8722 ENSMUSG00000111450.1 ENSMUSG00000111450 ENSMUST00000215428 Gm33351 lincRNA Interval_99375 chr2 160412991 160414947 + 0 NA Intergenic Intergenic -46904 ENSMUSG00000074622.4 ENSMUSG00000074622 ENSMUST00000099126 Mafb protein_coding Interval_38512 chr12 79760786 79761098 + 0 NA intron (ENSMUSG00000059060.15, intron 8 of 10) protein_coding-intron (ENSMUSG00000059060.15, intron 8 of 10) 164552 ENSMUSG00000112765.1 ENSMUSG00000112765 ENSMUST00000219857 9430078K24Rik lincRNA Interval_106503 chr3 96727236 96728221 + 0 NA promoter-TSS (ENSMUSG00000028098.13) protein_coding-promoter-TSS (ENSMUSG00000028098.13) -111 ENSMUSG00000028098.13 ENSMUSG00000028098 ENSMUST00000199974 Rnf115 protein_coding Interval_24773 chr11 37280966 37281163 + 0 NA Intergenic Intergenic -336898 ENSMUSG00000049336.16 ENSMUSG00000049336 ENSMUST00000157030 Tenm2 protein_coding Interval_106360 chr3 95635690 95636514 + 0 NA Intergenic Intergenic -3202 ENSMUSG00000106383.1 ENSMUSG00000106383 ENSMUST00000200640 E330034L11Rik TEC Interval_139178 chr6 96913908 96914135 + 0 NA intron (ENSMUSG00000046500.8, intron 3 of 5) protein_coding-intron (ENSMUSG00000046500.8, intron 3 of 5) 146372 ENSMUSG00000046500.8 ENSMUSG00000046500 ENSMUST00000203930 Tafa4 protein_coding Interval_30604 chr11 95397578 95398259 + 0 NA Intergenic Intergenic 13161 ENSMUSG00000020873.15 ENSMUSG00000020873 ENSMUST00000143090 Slc35b1 protein_coding Interval_161176 chr8 118169132 118169471 + 0 NA Intergenic Intergenic 48347 ENSMUSG00000065028.1 ENSMUSG00000065028 ENSMUST00000083094 Gm25200 snoRNA Interval_104198 chr3 60429505 60429829 + 0 NA Intergenic Intergenic -71598 ENSMUSG00000027763.13 ENSMUSG00000027763 ENSMUST00000193175 Mbnl1 protein_coding Interval_32287 chr11 106695883 106697126 + 0 NA intron (ENSMUSG00000020717.19, intron 3 of 14) protein_coding-intron (ENSMUSG00000020717.19, intron 5 of 15) -33178 ENSMUSG00000020717.19 ENSMUSG00000020717 ENSMUST00000124958 Pecam1 protein_coding Interval_36991 chr12 56024437 56024758 + 0 NA Intergenic Intergenic -25936 ENSMUSG00000112315.1 ENSMUSG00000112315 ENSMUST00000219409 Gm5183 processed_pseudogene Interval_137265 chr6 70898281 70900024 + 0 NA intron (ENSMUSG00000031668.14, intron 1 of 1) protein_coding-intron (ENSMUSG00000031668.14, intron 14 of 16) -13350 ENSMUSG00000105776.1 ENSMUSG00000105776 ENSMUST00000199580 Gm43292 TEC Interval_42601 chr13 16547404 16547815 + 0 NA Intergenic Intergenic -13788 ENSMUSG00000113972.1 ENSMUSG00000113972 ENSMUST00000222545 Gm48497 processed_pseudogene Interval_91675 chr2 47098743 47098955 + 0 NA Intergenic Intergenic -443135 ENSMUSG00000092853.1 ENSMUSG00000092853 ENSMUST00000175112 Gm25959 miRNA Interval_275 KZ289068.1 480506 483191 + 0 NA NA NA NA NA Interval_72960 chr17 33817055 33818404 + 0 NA promoter-TSS (ENSMUSG00000042099.16) protein_coding-promoter-TSS (ENSMUSG00000042099.16) -4291 ENSMUSG00000042099.16 ENSMUSG00000042099 ENSMUST00000174608 Kank3 protein_coding Interval_8645 chr1 146001633 146001853 + 0 NA Intergenic Intergenic -418693 ENSMUSG00000090323.2 ENSMUSG00000090323 ENSMUST00000163646 Gm5263 processed_pseudogene Interval_148681 chr7 84113192 84113720 + 0 NA TTS (ENSMUSG00000038459.10) protein_coding-TTS (ENSMUSG00000038459.10) -26954 ENSMUSG00000052353.13 ENSMUSG00000052353 ENSMUST00000147578 Cemip protein_coding Interval_34415 chr12 3954658 3955580 + 0 NA intron (ENSMUSG00000020660.6, intron 1 of 2) protein_coding-intron (ENSMUSG00000020660.6, intron 1 of 2) 149 ENSMUSG00000020660.6 ENSMUSG00000020660 ENSMUST00000220006 Pomc protein_coding Interval_147241 chr7 64996212 64996489 + 0 NA intron (ENSMUSG00000030518.17, intron 1 of 3) protein_coding-intron (ENSMUSG00000030518.17, intron 1 of 9) -39774 ENSMUSG00000093212.1 ENSMUSG00000093212 ENSMUST00000175471 Gm25249 miRNA Interval_142867 chr6 146587952 146588145 + 0 NA promoter-TSS (ENSMUSG00000040242.14) protein_coding-promoter-TSS (ENSMUSG00000040242.14) 10108 ENSMUSG00000040242.14 ENSMUSG00000040242 ENSMUST00000160697 Fgfr1op2 protein_coding Interval_865 chr1 12790863 12791615 + 0 NA intron (ENSMUSG00000016918.15, intron 4 of 11) protein_coding-intron (ENSMUSG00000016918.15, intron 4 of 21) 71775 ENSMUSG00000016918.15 ENSMUSG00000016918 ENSMUST00000185780 Sulf1 protein_coding Interval_101068 chr2 174869821 174870527 + 0 NA Intergenic Intergenic 13885 ENSMUSG00000086177.1 ENSMUSG00000086177 ENSMUST00000131690 Gm14616 lincRNA Interval_130643 chr5 129401534 129401740 + 0 NA Intergenic Intergenic 37517 ENSMUSG00000104681.1 ENSMUSG00000104681 ENSMUST00000199076 Gm43001 lincRNA Interval_35026 chr12 16731105 16731813 + 0 NA intron (ENSMUSG00000036523.16, intron 6 of 34) protein_coding-intron (ENSMUSG00000036523.16, intron 4 of 32) 35764 ENSMUSG00000105567.1 ENSMUSG00000105567 ENSMUST00000199946 Gm44305 miRNA Interval_87289 chr19 47402976 47404160 + 0 NA intron (ENSMUSG00000053617.12, intron 2 of 13) protein_coding-intron (ENSMUSG00000053617.12, intron 2 of 14) 6791 ENSMUSG00000053617.12 ENSMUSG00000053617 ENSMUST00000237828 Sh3pxd2a protein_coding Interval_39505 chr12 88809189 88809516 + 0 NA intron (ENSMUSG00000066392.12, intron 2 of 7) protein_coding-intron (ENSMUSG00000066392.12, intron 2 of 3) 177083 ENSMUSG00000113997.1 ENSMUSG00000113997 ENSMUST00000222440 1700040E09Rik lincRNA Interval_173333 chrX 80220810 80221326 + 0 NA Intergenic Intergenic -23829 ENSMUSG00000082346.1 ENSMUSG00000082346 ENSMUST00000118629 Gm6952 processed_pseudogene Interval_104099 chr3 58570477 58571567 + 0 NA Intergenic Intergenic -5676 ENSMUSG00000075700.9 ENSMUSG00000075700 ENSMUST00000125815 Selenot protein_coding Interval_164033 chr9 31053860 31054148 + 0 NA promoter-TSS (ENSMUSG00000047412.16) protein_coding-promoter-TSS (ENSMUSG00000047412.16) 765 ENSMUSG00000047412.16 ENSMUSG00000047412 ENSMUST00000213202 Zbtb44 protein_coding Interval_41944 chr13 5011562 5012924 + 0 NA Intergenic Intergenic -69191 ENSMUSG00000113866.1 ENSMUSG00000113866 ENSMUST00000222131 Gm47450 lincRNA Interval_52486 chr14 46907099 46907433 + 0 NA intron (ENSMUSG00000021838.17, intron 3 of 12) protein_coding-intron (ENSMUSG00000021838.17, intron 2 of 12) 13746 ENSMUSG00000114996.1 ENSMUSG00000114996 ENSMUST00000228844 Gm48958 TEC Interval_113290 chr4 53165073 53165980 + 0 NA Intergenic Intergenic 52035 ENSMUSG00000087192.7 ENSMUSG00000087192 ENSMUST00000139222 4930412L05Rik processed_transcript Interval_132452 chr5 145038861 145039076 + 0 NA intron (ENSMUSG00000038770.17, intron 4 of 7) protein_coding-intron (ENSMUSG00000038770.17, intron 4 of 7) -3147 ENSMUSG00000105024.1 ENSMUSG00000105024 ENSMUST00000199866 Gm43561 processed_pseudogene Interval_112845 chr4 45480905 45481098 + 0 NA intron (ENSMUSG00000044813.15, intron 2 of 2) protein_coding-intron (ENSMUSG00000044813.15, intron 2 of 5) 1801 ENSMUSG00000044813.15 ENSMUSG00000044813 ENSMUST00000147448 Shb protein_coding Interval_141253 chr6 126561828 126562139 + 0 NA Intergenic Intergenic -5814 ENSMUSG00000110390.1 ENSMUSG00000110390 ENSMUST00000210335 Gm45869 lincRNA Interval_72373 chr17 29463840 29464421 + 0 NA promoter-TSS (ENSMUSG00000117427.1) lincRNA-promoter-TSS (ENSMUSG00000117427.1) 5501 ENSMUSG00000097125.2 ENSMUSG00000097125 ENSMUST00000234684 Gm26885 antisense Interval_137312 chr6 71243418 71243682 + 0 NA intron (ENSMUSG00000055027.17, intron 1 of 9) protein_coding-intron (ENSMUSG00000055027.17, intron 1 of 9) -26676 ENSMUSG00000055027.17 ENSMUSG00000055027 ENSMUST00000173297 Smyd1 protein_coding Interval_135553 chr6 40370578 40371038 + 0 NA intron (ENSMUSG00000029916.11, intron 8 of 15) protein_coding-intron (ENSMUSG00000029916.11, intron 8 of 15) 45300 ENSMUSG00000029916.11 ENSMUSG00000029916 ENSMUST00000201751 Agk protein_coding Interval_10790 chr1 174906742 174907164 + 0 NA intron (ENSMUSG00000050069.3, intron 1 of 1) protein_coding-intron (ENSMUSG00000050069.3, intron 1 of 1) 14866 ENSMUSG00000050069.3 ENSMUSG00000050069 ENSMUST00000055294 Grem2 protein_coding Interval_97443 chr2 136485706 136486197 + 0 NA Intergenic Intergenic -29564 ENSMUSG00000074771.10 ENSMUSG00000074771 ENSMUST00000138967 Ankef1 protein_coding Interval_117037 chr4 119140286 119142765 + 0 NA Intergenic Intergenic -2724 ENSMUSG00000085505.1 ENSMUSG00000085505 ENSMUST00000143801 Gm12868 antisense Interval_66978 chr16 38973959 38974700 + 0 NA intron (ENSMUSG00000022790.14, intron 1 of 6) protein_coding-intron (ENSMUSG00000022790.14, intron 1 of 6) 47120 ENSMUSG00000089607.1 ENSMUSG00000089607 ENSMUST00000158982 Gm22500 snRNA Interval_26545 chr11 58743188 58743493 + 0 NA Intergenic Intergenic -4128 ENSMUSG00000060030.5 ENSMUSG00000060030 ENSMUST00000075607 Olfr317 protein_coding Interval_152881 chr7 139434786 139435532 + 0 NA intron (ENSMUSG00000025477.14, intron 1 of 15) protein_coding-intron (ENSMUSG00000025477.14, intron 1 of 15) -81500 ENSMUSG00000025477.14 ENSMUSG00000025477 ENSMUST00000152475 Inpp5a protein_coding Interval_107884 chr3 116579856 116580369 + 0 NA TTS (ENSMUSG00000033439.12) protein_coding-TTS (ENSMUSG00000033439.12) 3364 ENSMUSG00000033439.12 ENSMUSG00000033439 ENSMUST00000198103 Trmt13 protein_coding Interval_88708 chr2 9906001 9906557 + 0 NA exon (ENSMUSG00000075534.5, exon 1 of 2) antisense-exon (ENSMUSG00000075534.5, exon 1 of 2) 101 ENSMUSG00000075534.5 ENSMUSG00000075534 ENSMUST00000149014 Gm13262 antisense Interval_109969 chr3 152240291 152240683 + 0 NA intron (ENSMUSG00000039103.12, intron 3 of 3) protein_coding-intron (ENSMUSG00000039103.12, intron 10 of 12) 12316 ENSMUSG00000104621.1 ENSMUSG00000104621 ENSMUST00000197507 Gm43185 TEC Interval_61148 chr15 79493612 79493992 + 0 NA intron (ENSMUSG00000044216.7, intron 1 of 1) protein_coding-intron (ENSMUSG00000044216.7, intron 1 of 1) -11128 ENSMUSG00000116081.1 ENSMUSG00000116081 ENSMUST00000229365 Gm49593 TEC Interval_103850 chr3 53622962 53623323 + 0 NA intron (ENSMUSG00000037016.11, intron 2 of 23) protein_coding-intron (ENSMUSG00000037016.11, intron 2 of 23) 44186 ENSMUSG00000105840.1 ENSMUSG00000105840 ENSMUST00000198253 Gm6073 processed_pseudogene Interval_23039 chr11 19176712 19176911 + 0 NA Intergenic Intergenic -59377 ENSMUSG00000102585.1 ENSMUSG00000102585 ENSMUST00000193150 Gm37439 TEC Interval_72004 chr17 27531484 27535422 + 0 NA Intergenic Intergenic 3386 ENSMUSG00000082741.2 ENSMUSG00000082741 ENSMUST00000119573 Gm9703 processed_pseudogene Interval_34519 chr12 4862477 4863104 + 0 NA TTS (ENSMUSG00000037336.14) protein_coding-TTS (ENSMUSG00000037336.14) 6471 ENSMUSG00000037336.14 ENSMUSG00000037336 ENSMUST00000147241 Mfsd2b protein_coding Interval_155433 chr8 33581943 33582138 + 0 NA exon (ENSMUSG00000009628.14, exon 3 of 4) protein_coding-exon (ENSMUSG00000009628.14, exon 3 of 4) -17585 ENSMUSG00000009630.10 ENSMUSG00000009630 ENSMUST00000009774 Ppp2cb protein_coding Interval_20810 chr10 121173684 121174218 + 0 NA Intergenic Intergenic 11560 ENSMUSG00000112415.1 ENSMUSG00000112415 ENSMUST00000219190 Gm48426 TEC Interval_147106 chr7 63175291 63175483 + 0 NA intron (ENSMUSG00000030525.8, intron 2 of 4) protein_coding-intron (ENSMUSG00000030525.8, intron 2 of 9) 37182 ENSMUSG00000030525.8 ENSMUSG00000030525 ENSMUST00000208304 Chrna7 protein_coding Interval_17079 chr10 71237488 71238466 + 0 NA promoter-TSS (ENSMUSG00000003923.14) protein_coding-promoter-TSS (ENSMUSG00000003923.14) -935 ENSMUSG00000003923.14 ENSMUSG00000003923 ENSMUST00000152505 Tfam protein_coding Interval_6099 chr1 96871184 96872410 + 0 NA promoter-TSS (ENSMUSG00000097814.5) antisense-promoter-TSS (ENSMUSG00000097814.5) 374 ENSMUSG00000040693.7 ENSMUSG00000040693 ENSMUST00000071985 Slco4c1 protein_coding Interval_64086 chr16 7489887 7490091 + 0 NA Intergenic Intergenic 219077 ENSMUSG00000115989.1 ENSMUSG00000115989 ENSMUST00000229672 Gm49533 processed_pseudogene Interval_104479 chr3 66325585 66325894 + 0 NA Intergenic Intergenic -28991 ENSMUSG00000027831.9 ENSMUSG00000027831 ENSMUST00000182815 Veph1 protein_coding Interval_109621 chr3 145402118 145403212 + 0 NA intron (ENSMUSG00000028197.4, intron 22 of 59) protein_coding-intron (ENSMUSG00000028197.4, intron 22 of 59) 15379 ENSMUSG00000105619.1 ENSMUSG00000105619 ENSMUST00000197919 9530034A14Rik antisense Interval_164521 chr9 37687869 37688229 + 0 NA Intergenic Intergenic 2108 ENSMUSG00000097946.1 ENSMUSG00000097946 ENSMUST00000182705 Gm8343 processed_pseudogene Interval_65139 chr16 20114235 20114476 + 0 NA intron (ENSMUSG00000062901.3, intron 3 of 7) protein_coding-intron (ENSMUSG00000062901.3, intron 3 of 7) 16770 ENSMUSG00000062901.3 ENSMUSG00000062901 ENSMUST00000231842 Klhl24 protein_coding Interval_70679 chr17 12984563 12984783 + 0 NA promoter-TSS (ENSMUSG00000060475.13) protein_coding-promoter-TSS (ENSMUSG00000060475.13) 9496 ENSMUSG00000060475.13 ENSMUSG00000060475 ENSMUST00000233467 Wtap protein_coding Interval_109454 chr3 142560414 142561674 + 0 NA promoter-TSS (ENSMUSG00000028268.14) protein_coding-promoter-TSS (ENSMUSG00000028268.14) 1018 ENSMUSG00000028268.14 ENSMUSG00000028268 ENSMUST00000142060 Gbp3 protein_coding Interval_78264 chr18 10977159 10977953 + 0 NA Intergenic Intergenic 48672 ENSMUSG00000117563.1 ENSMUSG00000117563 ENSMUST00000235119 Gm7575 processed_pseudogene Interval_33852 chr11 119007405 119008469 + 0 NA Intergenic Intergenic -15788 ENSMUSG00000025577.7 ENSMUSG00000025577 ENSMUST00000139746 Cbx2 protein_coding Interval_66732 chr16 36746871 36747663 + 0 NA Intergenic Intergenic 8140 ENSMUSG00000022899.9 ENSMUSG00000022899 ENSMUST00000169644 Slc15a2 protein_coding Interval_111268 chr4 16247936 16248150 + 0 NA intron (ENSMUSG00000083725.1, intron 1 of 1) processed_pseudogene-intron (ENSMUSG00000083725.1, intron 1 of 1) 1774 ENSMUSG00000083725.1 ENSMUSG00000083725 ENSMUST00000118093 Gm11865 processed_pseudogene Interval_156387 chr8 47862107 47862469 + 0 NA intron (ENSMUSG00000031563.8, intron 14 of 22) protein_coding-intron (ENSMUSG00000031563.8, intron 14 of 22) -36894 ENSMUSG00000064519.1 ENSMUSG00000064519 ENSMUST00000082585 n-R5s97 rRNA Interval_143041 chr6 148830793 148832030 + 0 NA promoter-TSS (ENSMUSG00000040029.15) protein_coding-promoter-TSS (ENSMUSG00000040029.15) -41 ENSMUSG00000107909.1 ENSMUSG00000107909 ENSMUST00000204670 2610017A05Rik TEC Interval_105300 chr3 84681220 84682009 + 0 NA intron (ENSMUSG00000056498.13, intron 1 of 2) protein_coding-intron (ENSMUSG00000056498.13, intron 1 of 6) 15404 ENSMUSG00000056498.13 ENSMUSG00000056498 ENSMUST00000128344 Tmem154 protein_coding Interval_49084 chr13 107830995 107832030 + 0 NA intron (ENSMUSG00000032846.10, intron 1 of 12) protein_coding-intron (ENSMUSG00000032846.10, intron 2 of 14) -2232 ENSMUSG00000093334.2 ENSMUSG00000093334 ENSMUST00000175593 Gm22118 miRNA Interval_57708 chr15 16372881 16373808 + 0 NA Intergenic Intergenic 123468 ENSMUSG00000115614.1 ENSMUSG00000115614 ENSMUST00000227529 Gm41276 lincRNA Interval_70325 chr17 8505839 8506369 + 0 NA Intergenic Intergenic 60846 ENSMUSG00000099104.1 ENSMUSG00000099104 ENSMUST00000184183 Gm17087 protein_coding Interval_14595 chr10 36834444 36834786 + 0 NA TTS (ENSMUSG00000044499.11) protein_coding-TTS (ENSMUSG00000044499.11) -58684 ENSMUSG00000088423.1 ENSMUSG00000088423 ENSMUST00000157798 Gm22554 snoRNA Interval_78518 chr18 14063110 14064022 + 0 NA Intergenic Intergenic -160096 ENSMUSG00000117600.1 ENSMUSG00000117600 ENSMUST00000234954 Gm50094 TEC Interval_139689 chr6 107092384 107092866 + 0 NA Intergenic Intergenic 1490 ENSMUSG00000107981.1 ENSMUSG00000107981 ENSMUST00000203999 Gm6064 processed_pseudogene Interval_158217 chr8 79941680 79942487 + 0 NA Intergenic Intergenic -28307 ENSMUSG00000098688.1 ENSMUSG00000098688 ENSMUST00000183628 Gm27820 misc_RNA Interval_104588 chr3 68564965 68565969 + 0 NA intron (ENSMUSG00000027777.15, intron 2 of 5) protein_coding-intron (ENSMUSG00000027777.15, intron 2 of 7) -17759 ENSMUSG00000084617.1 ENSMUSG00000084617 ENSMUST00000122668 Gm22073 snRNA Interval_3842 chr1 63497320 63497589 + 0 NA intron (ENSMUSG00000025964.15, intron 1 of 23) protein_coding-intron (ENSMUSG00000025964.15, intron 3 of 25) 26835 ENSMUSG00000025964.15 ENSMUSG00000025964 ENSMUST00000141545 Adam23 protein_coding Interval_72865 chr17 32763980 32764356 + 0 NA Intergenic Intergenic -9970 ENSMUSG00000117443.1 ENSMUSG00000117443 ENSMUST00000234135 Gm50046 lincRNA Interval_124672 chr5 53104546 53104834 + 0 NA Intergenic Intergenic -38470 ENSMUSG00000077316.1 ENSMUSG00000077316 ENSMUST00000104128 n-R5s171 rRNA Interval_158608 chr8 84729712 84730861 + 0 NA intron (ENSMUSG00000001911.16, intron 2 of 9) protein_coding-intron (ENSMUSG00000001911.16, intron 2 of 8) 7279 ENSMUSG00000074203.4 ENSMUSG00000074203 ENSMUST00000098571 G430095P16Rik protein_coding Interval_170779 chr9 110709455 110710313 + 0 NA promoter-TSS (ENSMUSG00000019659.8) protein_coding-promoter-TSS (ENSMUSG00000019659.8) -127 ENSMUSG00000019659.8 ENSMUSG00000019659 ENSMUST00000196542 Ccdc12 protein_coding Interval_111319 chr4 18653455 18653835 + 0 NA intron (ENSMUSG00000087402.1, intron 3 of 10) processed_transcript-intron (ENSMUSG00000087402.1, intron 3 of 10) -55103 ENSMUSG00000089578.1 ENSMUSG00000089578 ENSMUST00000158953 Gm25971 misc_RNA Interval_81167 chr18 55505181 55505441 + 0 NA Intergenic Intergenic 11803 ENSMUSG00000103555.1 ENSMUSG00000103555 ENSMUST00000192601 Gm37337 TEC Interval_171926 chr9 122625254 122625647 + 0 NA intron (ENSMUSG00000097736.8, intron 2 of 3) lincRNA-intron (ENSMUSG00000097736.8, intron 2 of 3) 22380 ENSMUSG00000111143.1 ENSMUSG00000111143 ENSMUST00000216699 Gm47134 lincRNA Interval_131638 chr5 139004038 139004232 + 0 NA Intergenic Intergenic 9079 ENSMUSG00000075585.3 ENSMUSG00000075585 ENSMUST00000187923 6330403L08Rik antisense Interval_10437 chr1 170867316 170868889 + 0 NA promoter-TSS (ENSMUSG00000026663.6) protein_coding-promoter-TSS (ENSMUSG00000026663.6) -543 ENSMUSG00000053925.4 ENSMUSG00000053925 ENSMUST00000171747 Gm9929 processed_transcript Interval_17354 chr10 76041548 76041792 + 0 NA exon (ENSMUSG00000049764.8, exon 2 of 2) protein_coding-exon (ENSMUSG00000049764.8, exon 2 of 2) 9020 ENSMUSG00000049764.8 ENSMUSG00000049764 ENSMUST00000061617 Zfp280b protein_coding Interval_66718 chr16 36597893 36598701 + 0 NA promoter-TSS (ENSMUSG00000116961.1) lincRNA-promoter-TSS (ENSMUSG00000116961.1) 6222 ENSMUSG00000022901.13 ENSMUSG00000022901 ENSMUST00000145506 Cd86 protein_coding Interval_61542 chr15 82246304 82247744 + 0 NA Intergenic Intergenic -2614 ENSMUSG00000068101.11 ENSMUSG00000068101 ENSMUST00000229747 Cenpm protein_coding Interval_53789 chr14 61757221 61759360 + 0 NA Intergenic Intergenic 74780 ENSMUSG00000104187.1 ENSMUSG00000104187 ENSMUST00000194021 Gm37820 TEC Interval_65252 chr16 20862096 20862376 + 0 NA Intergenic Intergenic 31323 ENSMUSG00000116850.1 ENSMUSG00000116850 ENSMUST00000232124 Gm49742 lincRNA Interval_56273 chr14 115650042 115650386 + 0 NA intron (ENSMUSG00000022112.14, intron 6 of 7) protein_coding-intron (ENSMUSG00000022112.14, intron 6 of 7) -93692 ENSMUSG00000093589.1 ENSMUSG00000093589 ENSMUST00000176139 Gm18367 processed_pseudogene Interval_163247 chr9 19572785 19573748 + 0 NA Intergenic Intergenic -5893 ENSMUSG00000095667.2 ENSMUSG00000095667 ENSMUST00000072419 Olfr854 protein_coding Interval_58223 chr15 31184939 31185268 + 0 NA Intergenic Intergenic 9235 ENSMUSG00000077468.1 ENSMUSG00000077468 ENSMUST00000104280 Gm26416 snoRNA Interval_133942 chr6 16062280 16062559 + 0 NA Intergenic Intergenic 27540 ENSMUSG00000108201.1 ENSMUSG00000108201 ENSMUST00000203751 Gm43991 processed_pseudogene Interval_161430 chr8 120428798 120431034 + 0 NA intron (ENSMUSG00000031822.20, intron 2 of 2) protein_coding-intron (ENSMUSG00000092329.1, intron 1 of 15) 13633 ENSMUSG00000080549.2 ENSMUSG00000080549 ENSMUST00000116899 Gm22715 miRNA Interval_69852 chr16 97568602 97569288 + 0 NA exon (ENSMUSG00000000385.8, exon 10 of 14) protein_coding-exon (ENSMUSG00000000385.8, exon 10 of 14) -1608 ENSMUSG00000000385.8 ENSMUSG00000000385 ENSMUST00000232141 Tmprss2 protein_coding Interval_110239 chr3 154680899 154681136 + 0 NA TTS (ENSMUSG00000103204.1) sense_overlapping-TTS (ENSMUSG00000103204.1) 24316 ENSMUSG00000103204.1 ENSMUSG00000103204 ENSMUST00000195806 Gm38139 sense_overlapping Interval_159215 chr8 91804352 91804626 + 0 NA exon (ENSMUSG00000046413.14, exon 3 of 5) antisense-exon (ENSMUSG00000046413.14, exon 3 of 5) 2314 ENSMUSG00000046413.14 ENSMUSG00000046413 ENSMUST00000133528 Irx3os antisense Interval_12352 chr1 192397868 192398242 + 0 NA intron (ENSMUSG00000058248.12, intron 7 of 10) protein_coding-intron (ENSMUSG00000058248.12, intron 7 of 10) -36685 ENSMUSG00000058248.12 ENSMUSG00000058248 ENSMUST00000151152 Kcnh1 protein_coding Interval_143489 chr7 10107892 10108132 + 0 NA Intergenic Intergenic -2271 ENSMUSG00000058685.7 ENSMUSG00000058685 ENSMUST00000094863 Vmn2r51 protein_coding Interval_137890 chr6 83161741 83163078 + 0 NA exon (ENSMUSG00000030030.5, exon 4 of 4) protein_coding-exon (ENSMUSG00000030030.5, exon 4 of 4) 5908 ENSMUSG00000030030.5 ENSMUSG00000030030 ENSMUST00000203203 1700003E16Rik protein_coding Interval_123044 chr5 29170536 29172014 + 0 NA Intergenic Intergenic -25312 ENSMUSG00000029130.12 ENSMUSG00000029130 ENSMUST00000163050 Rnf32 protein_coding Interval_162207 chr8 125963457 125965348 + 0 NA Intergenic Intergenic -31034 ENSMUSG00000033998.9 ENSMUSG00000033998 ENSMUST00000212831 Kcnk1 protein_coding Interval_154445 chr8 17574199 17574797 + 0 NA Intergenic Intergenic -39217 ENSMUSG00000060924.15 ENSMUSG00000060924 ENSMUST00000122983 Csmd1 protein_coding Interval_54760 chr14 74834720 74835773 + 0 NA intron (ENSMUSG00000068015.8, intron 3 of 18) protein_coding-intron (ENSMUSG00000068015.8, intron 3 of 19) -39941 ENSMUSG00000068015.8 ENSMUSG00000068015 ENSMUST00000227433 Lrch1 protein_coding Interval_113938 chr4 60081428 60081835 + 0 NA Intergenic Intergenic -4209 ENSMUSG00000083239.1 ENSMUSG00000083239 ENSMUST00000120720 Mup-ps1 unprocessed_pseudogene Interval_93692 chr2 75885058 75885438 + 0 NA intron (ENSMUSG00000042410.16, intron 2 of 2) protein_coding-intron (ENSMUSG00000042410.16, intron 11 of 19) -23923 ENSMUSG00000042410.16 ENSMUSG00000042410 ENSMUST00000177204 Agps protein_coding Interval_30938 chr11 97301988 97302919 + 0 NA Intergenic Intergenic -13455 ENSMUSG00000018882.12 ENSMUSG00000018882 ENSMUST00000132168 Mrpl45 protein_coding Interval_162027 chr8 124532501 124532769 + 0 NA intron (ENSMUSG00000031979.17, intron 6 of 12) protein_coding-intron (ENSMUSG00000031979.17, intron 6 of 17) 11816 ENSMUSG00000031979.17 ENSMUSG00000031979 ENSMUST00000129977 Cog2 protein_coding Interval_91915 chr2 51411268 51411667 + 0 NA Intergenic Intergenic 26433 ENSMUSG00000086007.1 ENSMUSG00000086007 ENSMUST00000154530 1700057H21Rik lincRNA Interval_83339 chr18 84380531 84380900 + 0 NA intron (ENSMUSG00000048410.17, intron 4 of 8) protein_coding-intron (ENSMUSG00000048410.17, intron 2 of 2) -4569 ENSMUSG00000102951.1 ENSMUSG00000102951 ENSMUST00000193817 Gm37216 TEC Interval_116742 chr4 117029505 117029949 + 0 NA intron (ENSMUSG00000028683.14, intron 3 of 11) protein_coding-intron (ENSMUSG00000028683.14, intron 2 of 9) 2516 ENSMUSG00000088349.1 ENSMUSG00000088349 ENSMUST00000157724 Gm22335 snRNA Interval_449 chr1 5450267 5450994 + 0 NA Intergenic Intergenic 47083 ENSMUSG00000102907.1 ENSMUSG00000102907 ENSMUST00000194850 Gm38264 TEC Interval_41616 chr12 117029934 117030187 + 0 NA intron (ENSMUSG00000056553.14, intron 12 of 22) protein_coding-intron (ENSMUSG00000056553.14, intron 12 of 22) 121155 ENSMUSG00000099907.1 ENSMUSG00000099907 ENSMUST00000186114 Gm10421 processed_transcript Interval_165385 chr9 47094747 47094977 + 0 NA intron (ENSMUSG00000111669.1, intron 2 of 2) lincRNA-intron (ENSMUSG00000111669.1, intron 2 of 2) 96121 ENSMUSG00000094893.2 ENSMUSG00000094893 ENSMUST00000178065 Gm4791 protein_coding Interval_162354 chr8 127342937 127343653 + 0 NA intron (ENSMUSG00000025812.18, intron 5 of 15) protein_coding-intron (ENSMUSG00000025812.18, intron 5 of 23) 171891 ENSMUSG00000025812.18 ENSMUSG00000025812 ENSMUST00000159940 Pard3 protein_coding Interval_158159 chr8 79331468 79333121 + 0 NA Intergenic Intergenic 24384 ENSMUSG00000031681.16 ENSMUSG00000031681 ENSMUST00000066081 Smad1 protein_coding Interval_70750 chr17 14165525 14165845 + 0 NA Intergenic Intergenic -38043 ENSMUSG00000117185.1 ENSMUSG00000117185 ENSMUST00000232962 Gm34510 antisense Interval_20646 chr10 119958992 119959318 + 0 NA intron (ENSMUSG00000034813.18, intron 7 of 23) protein_coding-intron (ENSMUSG00000034813.18, intron 7 of 22) -106878 ENSMUSG00000085418.1 ENSMUSG00000085418 ENSMUST00000135940 Grip1os1 antisense Interval_26068 chr11 53891190 53892355 + 0 NA promoter-TSS (ENSMUSG00000018900.7) protein_coding-promoter-TSS (ENSMUSG00000018900.7) -10418 ENSMUSG00000082271.1 ENSMUSG00000082271 ENSMUST00000118858 Gm12217 processed_pseudogene Interval_129415 chr5 119845064 119845580 + 0 NA TTS (ENSMUSG00000018263.11) protein_coding-TTS (ENSMUSG00000018263.11) 12654 ENSMUSG00000018263.11 ENSMUSG00000018263 ENSMUST00000202504 Tbx5 protein_coding Interval_165223 chr9 45465549 45465843 + 0 NA intron (ENSMUSG00000032087.11, intron 3 of 32) protein_coding-intron (ENSMUSG00000032087.11, intron 3 of 32) -33966 ENSMUSG00000097074.2 ENSMUSG00000097074 ENSMUST00000215652 4833428L15Rik antisense Interval_117875 chr4 126824824 126825047 + 0 NA intron (ENSMUSG00000028830.14, intron 2 of 4) protein_coding-intron (ENSMUSG00000028830.14, intron 6 of 20) -6790 ENSMUSG00000077780.1 ENSMUSG00000077780 ENSMUST00000104592 Gm24161 snoRNA Interval_86736 chr19 43495945 43496240 + 0 NA exon (ENSMUSG00000025189.9, exon 11 of 11) protein_coding-exon (ENSMUSG00000025189.9, exon 11 of 11) 19773 ENSMUSG00000025190.13 ENSMUSG00000025190 ENSMUST00000124954 Got1 protein_coding Interval_15734 chr10 55372373 55372713 + 0 NA Intergenic Intergenic 248181 ENSMUSG00000112755.1 ENSMUSG00000112755 ENSMUST00000219650 Gm46190 processed_pseudogene Interval_34017 chr11 120046419 120048483 + 0 NA promoter-TSS (ENSMUSG00000025375.15) protein_coding-promoter-TSS (ENSMUSG00000025375.15) -284 ENSMUSG00000025375.15 ENSMUSG00000025375 ENSMUST00000134319 Aatk protein_coding Interval_160226 chr8 107269395 107269638 + 0 NA Intergenic Intergenic -6268 ENSMUSG00000057657.4 ENSMUSG00000057657 ENSMUST00000080443 Rps18-ps3 processed_pseudogene Interval_133741 chr6 10944031 10945184 + 0 NA intron (ENSMUSG00000107847.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000107847.1, intron 1 of 2) 29771 ENSMUSG00000107948.2 ENSMUSG00000107948 ENSMUST00000205141 AA545190 lincRNA Interval_132734 chr5 147463333 147463607 + 0 NA intron (ENSMUSG00000029647.15, intron 3 of 5) protein_coding-intron (ENSMUSG00000029647.15, intron 4 of 18) 24080 ENSMUSG00000107085.1 ENSMUSG00000107085 ENSMUST00000202594 Gm42883 processed_pseudogene Interval_22611 chr11 12277102 12277421 + 0 NA intron (ENSMUSG00000020173.17, intron 4 of 4) protein_coding-intron (ENSMUSG00000020173.17, intron 9 of 14) -45014 ENSMUSG00000086584.8 ENSMUSG00000086584 ENSMUST00000174550 Gm12002 antisense Interval_105068 chr3 80941256 80941573 + 0 NA Intergenic Intergenic -21546 ENSMUSG00000105092.1 ENSMUSG00000105092 ENSMUST00000200360 Gm42468 lincRNA Interval_70874 chr17 15517879 15519299 + 0 NA TTS (ENSMUSG00000014771.13) protein_coding-TTS (ENSMUSG00000014771.13) 8524 ENSMUSG00000014771.13 ENSMUSG00000014771 ENSMUST00000137233 Pdcd2 protein_coding Interval_87087 chr19 46039071 46040165 + 0 NA promoter-TSS (ENSMUSG00000025223.15) protein_coding-promoter-TSS (ENSMUSG00000025223.15) 5593 ENSMUSG00000025223.15 ENSMUSG00000025223 ENSMUST00000136203 Ldb1 protein_coding Interval_80706 chr18 46498921 46499178 + 0 NA Intergenic Intergenic 1964 ENSMUSG00000118116.1 ENSMUSG00000118116 ENSMUST00000235462 Gm3720 processed_pseudogene Interval_171555 chr9 119190252 119190445 + 0 NA promoter-TSS (ENSMUSG00000070280.13) protein_coding-promoter-TSS (ENSMUSG00000070280.13) 18750 ENSMUSG00000074028.4 ENSMUSG00000074028 ENSMUST00000084797 Slc22a13 protein_coding Interval_29506 chr11 84519093 84519519 + 0 NA TTS (ENSMUSG00000018698.15) protein_coding-TTS (ENSMUSG00000018698.15) 3025 ENSMUSG00000018698.15 ENSMUSG00000018698 ENSMUST00000092827 Lhx1 protein_coding Interval_169740 chr9 100831099 100831459 + 0 NA intron (ENSMUSG00000037286.15, intron 9 of 12) protein_coding-intron (ENSMUSG00000037286.15, intron 9 of 32) -45812 ENSMUSG00000103624.1 ENSMUSG00000103624 ENSMUST00000193413 Gm3081 TEC Interval_129292 chr5 118716687 118717115 + 0 NA intron (ENSMUSG00000018076.12, intron 4 of 4) protein_coding-intron (ENSMUSG00000018076.12, intron 4 of 30) 9499 ENSMUSG00000107364.1 ENSMUSG00000107364 ENSMUST00000201096 Gm43051 TEC Interval_25953 chr11 53084828 53085616 + 0 NA intron (ENSMUSG00000036264.9, intron 6 of 15) protein_coding-intron (ENSMUSG00000036264.9, intron 6 of 15) 34834 ENSMUSG00000087668.1 ENSMUSG00000087668 ENSMUST00000137096 Gm11186 antisense Interval_26070 chr11 53903714 53904828 + 0 NA TTS (ENSMUSG00000082271.1) processed_pseudogene-TTS (ENSMUSG00000082271.1) -1116 ENSMUSG00000082380.1 ENSMUSG00000082380 ENSMUST00000117666 Gm12218 processed_pseudogene Interval_65169 chr16 20322189 20323107 + 0 NA intron (ENSMUSG00000022818.13, intron 2 of 8) protein_coding-intron (ENSMUSG00000022818.13, intron 1 of 7) -5898 ENSMUSG00000022818.13 ENSMUSG00000022818 ENSMUST00000182669 Cyp2ab1 protein_coding Interval_104345 chr3 63836399 63836608 + 0 NA intron (ENSMUSG00000036834.16, intron 2 of 22) protein_coding-intron (ENSMUSG00000036834.16, intron 1 of 21) -6613 ENSMUSG00000085290.1 ENSMUSG00000085290 ENSMUST00000152628 Gm16129 processed_pseudogene Interval_67395 chr16 48303206 48304526 + 0 NA promoter-TSS (ENSMUSG00000072419.5) protein_coding-promoter-TSS (ENSMUSG00000072419.5) -42 ENSMUSG00000072419.5 ENSMUSG00000072419 ENSMUST00000097175 Dppa2 protein_coding Interval_26865 chr11 61183190 61183456 + 0 NA Intergenic Intergenic -15048 ENSMUSG00000042506.15 ENSMUSG00000042506 ENSMUST00000174220 Usp22 protein_coding Interval_156991 chr8 63929056 63930305 + 0 NA intron (ENSMUSG00000094443.2, intron 6 of 7) protein_coding-intron (ENSMUSG00000094443.2, intron 6 of 7) -3484 ENSMUSG00000109818.1 ENSMUSG00000109818 ENSMUST00000210516 Gm35713 processed_pseudogene Interval_144023 chr7 19023369 19025069 + 0 NA promoter-TSS (ENSMUSG00000023118.15) protein_coding-promoter-TSS (ENSMUSG00000023118.15) -201 ENSMUSG00000023118.15 ENSMUSG00000023118 ENSMUST00000131230 Sympk protein_coding Interval_1118 chr1 15834290 15835086 + 0 NA intron (ENSMUSG00000025925.14, intron 8 of 9) protein_coding-intron (ENSMUSG00000025925.14, intron 7 of 8) -18643 ENSMUSG00000104379.1 ENSMUSG00000104379 ENSMUST00000194867 Gm37509 TEC Interval_23004 chr11 18834304 18834778 + 0 NA Intergenic Intergenic 25574 ENSMUSG00000085743.1 ENSMUSG00000085743 ENSMUST00000133948 8430419K02Rik processed_transcript Interval_38185 chr12 76249840 76250396 + 0 NA Intergenic Intergenic 5216 ENSMUSG00000112274.1 ENSMUSG00000112274 ENSMUST00000220205 Gm47525 bidirectional_promoter_lncRNA Interval_36925 chr12 55398268 55399516 + 0 NA promoter-TSS (ENSMUSG00000021024.14) protein_coding-promoter-TSS (ENSMUSG00000021024.14) -2663 ENSMUSG00000059033.7 ENSMUSG00000059033 ENSMUST00000161190 Rpl18a-ps1 processed_pseudogene Interval_171390 chr9 117297441 117298479 + 0 NA intron (ENSMUSG00000039607.17, intron 3 of 15) protein_coding-intron (ENSMUSG00000039607.17, intron 2 of 14) 45424 ENSMUSG00000079669.2 ENSMUSG00000079669 ENSMUST00000172075 Gm17396 processed_transcript Interval_166340 chr9 58442588 58442847 + 0 NA Intergenic Intergenic -12405 ENSMUSG00000097651.2 ENSMUSG00000097651 ENSMUST00000181967 4930461G14Rik lincRNA Interval_123437 chr5 32574078 32574758 + 0 NA intron (ENSMUSG00000085234.1, intron 2 of 3) antisense-intron (ENSMUSG00000085234.1, intron 2 of 3) 23754 ENSMUSG00000106835.3 ENSMUSG00000106835 ENSMUST00000202701 Gm43812 transcribed_unprocessed_pseudogene Interval_16837 chr10 69008288 69009155 + 0 NA Intergenic Intergenic 25167 ENSMUSG00000112331.1 ENSMUSG00000112331 ENSMUST00000219854 Gm33035 lincRNA Interval_109547 chr3 144348666 144348967 + 0 NA Intergenic Intergenic 28602 ENSMUSG00000106266.1 ENSMUSG00000106266 ENSMUST00000198471 Gm43447 lincRNA Interval_10680 chr1 172665189 172665393 + 0 NA Intergenic Intergenic 4345 ENSMUSG00000060128.5 ENSMUSG00000060128 ENSMUST00000073196 Gm2710 processed_pseudogene Interval_14177 chr10 28351232 28351685 + 0 NA intron (ENSMUSG00000019889.10, intron 5 of 14) protein_coding-intron (ENSMUSG00000019889.10, intron 5 of 31) -137337 ENSMUSG00000076377.1 ENSMUSG00000076377 ENSMUST00000102422 Gm22370 miRNA Interval_71823 chr17 26335640 26336100 + 0 NA Intergenic Intergenic -13248 ENSMUSG00000117551.1 ENSMUSG00000117551 ENSMUST00000234840 Gm50015 lincRNA Interval_7042 chr1 123442750 123442976 + 0 NA intron (ENSMUSG00000036815.17, intron 8 of 25) protein_coding-intron (ENSMUSG00000036815.17, intron 8 of 25) 17588 ENSMUSG00000102521.1 ENSMUSG00000102521 ENSMUST00000194773 Gm37781 TEC Interval_144497 chr7 25477253 25477896 + 0 NA promoter-TSS (ENSMUSG00000074272.10) protein_coding-promoter-TSS (ENSMUSG00000074272.10) 9 ENSMUSG00000074272.10 ENSMUSG00000074272 ENSMUST00000206981 Ceacam1 protein_coding Interval_167806 chr9 72803308 72803715 + 0 NA Intergenic Intergenic 24052 ENSMUSG00000098471.1 ENSMUSG00000098471 ENSMUST00000183677 Gm27203 processed_pseudogene Interval_127222 chr5 101543445 101543779 + 0 NA Intergenic Intergenic -37283 ENSMUSG00000106610.1 ENSMUSG00000106610 ENSMUST00000199021 Gm43103 processed_pseudogene Interval_78250 chr18 10776431 10776764 + 0 NA intron (ENSMUSG00000024294.14, intron 12 of 21) protein_coding-intron (ENSMUSG00000024294.14, intron 11 of 20) 6379 ENSMUSG00000065399.2 ENSMUSG00000065399 ENSMUST00000083465 Mir133a-1 miRNA Interval_46442 chr13 65295886 65296092 + 0 NA intron (ENSMUSG00000021514.18, intron 7 of 7) protein_coding-intron (ENSMUSG00000021514.18, intron 7 of 7) -6417 ENSMUSG00000021514.18 ENSMUSG00000021514 ENSMUST00000222364 Zfp369 protein_coding Interval_150223 chr7 108371039 108371506 + 0 NA Intergenic Intergenic 3782 ENSMUSG00000109631.1 ENSMUSG00000109631 ENSMUST00000210291 Olfr494 protein_coding Interval_173207 chrX 74229914 74230407 + 0 NA TTS (ENSMUSG00000031328.16) protein_coding-TTS (ENSMUSG00000031328.16) 11143 ENSMUSG00000031328.16 ENSMUSG00000031328 ENSMUST00000239316 Flna protein_coding Interval_161227 chr8 118860244 118861220 + 0 NA intron (ENSMUSG00000031841.19, intron 5 of 7) protein_coding-intron (ENSMUSG00000031841.19, intron 5 of 13) 133832 ENSMUSG00000087707.1 ENSMUSG00000087707 ENSMUST00000157082 Gm22999 snoRNA Interval_97818 chr2 144261400 144261602 + 0 NA promoter-TSS (ENSMUSG00000082436.1) processed_pseudogene-promoter-TSS (ENSMUSG00000082436.1) 40 ENSMUSG00000082436.1 ENSMUSG00000082436 ENSMUST00000122145 Gm11688 processed_pseudogene Interval_86208 chr19 37816972 37817717 + 0 NA Intergenic Intergenic 33078 ENSMUSG00000117939.1 ENSMUSG00000117939 ENSMUST00000236017 Gm9067 processed_pseudogene Interval_119741 chr4 139614607 139615419 + 0 NA exon (ENSMUSG00000041025.15, exon 10 of 11) protein_coding-exon (ENSMUSG00000041025.15, exon 10 of 11) -7881 ENSMUSG00000028737.15 ENSMUSG00000028737 ENSMUST00000124987 Aldh4a1 protein_coding Interval_118314 chr4 130246003 130246877 + 0 NA Intergenic Intergenic 29105 ENSMUSG00000023232.17 ENSMUSG00000023232 ENSMUST00000154846 Serinc2 protein_coding Interval_35650 chr12 26608131 26608398 + 0 NA intron (ENSMUSG00000113524.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000113524.1, intron 1 of 2) -5955 ENSMUSG00000113628.1 ENSMUSG00000113628 ENSMUST00000221140 1700020D12Rik lincRNA Interval_76841 chr17 84451696 84451957 + 0 NA exon (ENSMUSG00000024251.10, exon 8 of 38) protein_coding-exon (ENSMUSG00000024251.10, exon 8 of 38) 60397 ENSMUSG00000096415.1 ENSMUSG00000096415 ENSMUST00000179017 Gm24722 snRNA Interval_37081 chr12 57538589 57539446 + 0 NA Intergenic Intergenic 7899 ENSMUSG00000035451.7 ENSMUSG00000035451 ENSMUST00000218398 Foxa1 protein_coding Interval_116773 chr4 117224228 117224990 + 0 NA intron (ENSMUSG00000060268.12, intron 7 of 12) protein_coding-intron (ENSMUSG00000060268.12, intron 7 of 7) -10827 ENSMUSG00000086482.1 ENSMUSG00000086482 ENSMUST00000141554 1700012C08Rik processed_transcript Interval_25771 chr11 51626866 51627069 + 0 NA intron (ENSMUSG00000001054.9, intron 5 of 8) protein_coding-intron (ENSMUSG00000001054.9, intron 5 of 9) -1133 ENSMUSG00000001054.9 ENSMUSG00000001054 ENSMUST00000132854 Rmnd5b protein_coding Interval_15462 chr10 47330712 47331343 + 0 NA Intergenic Intergenic -5355 ENSMUSG00000111072.1 ENSMUSG00000111072 ENSMUST00000217393 Gm9068 processed_pseudogene Interval_14058 chr10 26347606 26348421 + 0 NA intron (ENSMUSG00000039089.15, intron 2 of 8) protein_coding-intron (ENSMUSG00000039089.15, intron 2 of 21) 8844 ENSMUSG00000098898.1 ENSMUSG00000098898 ENSMUST00000183340 Gm27754 miRNA Interval_7351 chr1 130365793 130366068 + 0 NA Intergenic Intergenic 56810 ENSMUSG00000026401.15 ENSMUSG00000026401 ENSMUST00000136497 Cd55b protein_coding Interval_147490 chr7 67705992 67706210 + 0 NA intron (ENSMUSG00000030555.16, intron 3 of 6) protein_coding-intron (ENSMUSG00000030555.16, intron 8 of 11) -24798 ENSMUSG00000109115.1 ENSMUSG00000109115 ENSMUST00000207774 Gm44669 TEC Interval_164205 chr9 32506358 32506743 + 0 NA intron (ENSMUSG00000016087.13, intron 1 of 6) protein_coding-intron (ENSMUSG00000016087.13, intron 1 of 8) -1863 ENSMUSG00000098645.1 ENSMUSG00000098645 ENSMUST00000183818 Gm27201 antisense Interval_60390 chr15 73447355 73447703 + 0 NA Intergenic Intergenic -18619 ENSMUSG00000116174.1 ENSMUSG00000116174 ENSMUST00000229262 Gm10362 processed_pseudogene Interval_142776 chr6 145551935 145552779 + 0 NA intron (ENSMUSG00000054966.13, intron 1 of 10) protein_coding-intron (ENSMUSG00000054966.13, intron 1 of 1) -63400 ENSMUSG00000067338.6 ENSMUSG00000067338 ENSMUST00000087445 Tuba3b protein_coding Interval_84606 chr19 14328640 14328906 + 0 NA Intergenic Intergenic 266766 ENSMUSG00000024642.17 ENSMUSG00000024642 ENSMUST00000235975 Tle4 protein_coding Interval_110211 chr3 154333376 154334569 + 0 NA exon (ENSMUSG00000093738.2, exon 3 of 3) processed_transcript-exon (ENSMUSG00000093738.2, exon 3 of 3) 1975 ENSMUSG00000093738.2 ENSMUSG00000093738 ENSMUST00000181234 AI606473 processed_transcript Interval_145180 chr7 30489952 30491243 + 0 NA Intergenic Intergenic -3062 ENSMUSG00000036892.12 ENSMUSG00000036892 ENSMUST00000122876 Prodh2 protein_coding Interval_48036 chr13 95443157 95444715 + 0 NA intron (ENSMUSG00000021680.8, intron 2 of 6) protein_coding-intron (ENSMUSG00000021680.8, intron 2 of 6) 988 ENSMUSG00000021680.8 ENSMUSG00000021680 ENSMUST00000045583 Crhbp protein_coding Interval_8452 chr1 139494181 139495739 + 0 NA TTS (ENSMUSG00000033952.14) protein_coding-TTS (ENSMUSG00000033952.14) -21434 ENSMUSG00000026368.6 ENSMUSG00000026368 ENSMUST00000141842 F13b protein_coding Interval_126124 chr5 77730475 77731311 + 0 NA Intergenic Intergenic 43517 ENSMUSG00000106996.1 ENSMUSG00000106996 ENSMUST00000201516 Gm31049 unprocessed_pseudogene Interval_82933 chr18 79588956 79589738 + 0 NA Intergenic Intergenic -13987 ENSMUSG00000118130.1 ENSMUSG00000118130 ENSMUST00000237642 Gm50176 processed_pseudogene Interval_30206 chr11 90584968 90585348 + 0 NA intron (ENSMUSG00000020546.14, intron 10 of 17) protein_coding-intron (ENSMUSG00000020546.14, intron 10 of 15) -46012 ENSMUSG00000081043.1 ENSMUSG00000081043 ENSMUST00000119669 Gm11512 processed_pseudogene Interval_93329 chr2 71980763 71981801 + 0 NA promoter-TSS (ENSMUSG00000049044.16) protein_coding-promoter-TSS (ENSMUSG00000049044.16) 18510 ENSMUSG00000088297.1 ENSMUSG00000088297 ENSMUST00000157672 Gm26408 snoRNA Interval_145703 chr7 37528513 37529028 + 0 NA intron (ENSMUSG00000043456.17, intron 1 of 3) protein_coding-intron (ENSMUSG00000043456.17, intron 4 of 5) -10916 ENSMUSG00000108330.1 ENSMUSG00000108330 ENSMUST00000205702 Gm44882 TEC Interval_158578 chr8 84600256 84602107 + 0 NA promoter-TSS (ENSMUSG00000034656.18) protein_coding-promoter-TSS (ENSMUSG00000034656.18) 16003 ENSMUSG00000086067.1 ENSMUSG00000086067 ENSMUST00000127527 Gm16183 antisense Interval_57590 chr15 12631532 12632659 + 0 NA TTS (ENSMUSG00000103130.1) TEC-TTS (ENSMUSG00000103130.1) 3251 ENSMUSG00000103130.1 ENSMUSG00000103130 ENSMUST00000191701 F830212C03Rik TEC Interval_32286 chr11 106692723 106693389 + 0 NA intron (ENSMUSG00000020717.19, intron 4 of 14) protein_coding-intron (ENSMUSG00000020717.19, intron 6 of 15) -29730 ENSMUSG00000020717.19 ENSMUSG00000020717 ENSMUST00000124958 Pecam1 protein_coding Interval_167364 chr9 67817697 67818728 + 0 NA Intergenic Intergenic 14118 ENSMUSG00000047990.6 ENSMUSG00000047990 ENSMUST00000054500 C2cd4a protein_coding Interval_165549 chr9 49360405 49361083 + 0 NA intron (ENSMUSG00000032259.8, intron 1 of 7) protein_coding-intron (ENSMUSG00000032259.8, intron 1 of 7) 20117 ENSMUSG00000032259.8 ENSMUSG00000032259 ENSMUST00000075764 Drd2 protein_coding Interval_124536 chr5 50155046 50155252 + 0 NA intron (ENSMUSG00000104870.1, intron 2 of 2) lincRNA-intron (ENSMUSG00000104870.1, intron 2 of 2) 3816 ENSMUSG00000104870.1 ENSMUSG00000104870 ENSMUST00000197958 4930448I18Rik lincRNA Interval_102091 chr3 16994078 16995461 + 0 NA Intergenic Intergenic -171457 ENSMUSG00000088644.1 ENSMUSG00000088644 ENSMUST00000158019 Gm26485 snRNA Interval_91215 chr2 35994678 35995016 + 0 NA Intergenic Intergenic -42433 ENSMUSG00000026885.13 ENSMUSG00000026885 ENSMUST00000162172 Ttll11 protein_coding Interval_22024 chr11 5843034 5843352 + 0 NA Intergenic Intergenic -6708 ENSMUSG00000020474.11 ENSMUSG00000020474 ENSMUST00000153987 Polm protein_coding Interval_5122 chr1 85820053 85820343 + 0 NA intron (ENSMUSG00000036707.16, intron 2 of 3) protein_coding-intron (ENSMUSG00000036707.16, intron 3 of 9) -22882 ENSMUSG00000036707.16 ENSMUSG00000036707 ENSMUST00000187623 Cab39 protein_coding Interval_110344 chr3 157195813 157196241 + 0 NA intron (ENSMUSG00000040037.13, intron 6 of 6) protein_coding-intron (ENSMUSG00000040037.13, intron 6 of 6) 12833 ENSMUSG00000102322.1 ENSMUSG00000102322 ENSMUST00000195173 4930566N20Rik TEC Interval_143864 chr7 16825913 16826249 + 0 NA intron (ENSMUSG00000030374.15, intron 5 of 6) protein_coding-intron (ENSMUSG00000030374.15, intron 4 of 17) -5018 ENSMUSG00000030374.15 ENSMUSG00000030374 ENSMUST00000183680 Strn4 protein_coding Interval_98251 chr2 150475343 150475819 + 0 NA intron (ENSMUSG00000074731.3, intron 1 of 3) protein_coding-intron (ENSMUSG00000074731.3, intron 1 of 3) -5416 ENSMUSG00000082740.1 ENSMUSG00000082740 ENSMUST00000117906 Gm14127 processed_pseudogene Interval_89049 chr2 15040462 15040986 + 0 NA intron (ENSMUSG00000026707.15, intron 4 of 11) protein_coding-intron (ENSMUSG00000026707.15, intron 3 of 10) -6548 ENSMUSG00000103778.1 ENSMUSG00000103778 ENSMUST00000195431 Gm36930 TEC Interval_37552 chr12 69827389 69829038 + 0 NA intron (ENSMUSG00000034761.15, intron 14 of 29) protein_coding-intron (ENSMUSG00000034761.15, intron 15 of 30) 8566 ENSMUSG00000113497.1 ENSMUSG00000113497 ENSMUST00000222163 Gm18030 processed_pseudogene Interval_44810 chr13 48810211 48811200 + 0 NA intron (ENSMUSG00000038025.8, intron 17 of 21) protein_coding-intron (ENSMUSG00000038025.8, intron 17 of 21) -47124 ENSMUSG00000113297.1 ENSMUSG00000113297 ENSMUST00000222192 Rpl17-ps6 processed_pseudogene Interval_165400 chr9 47458253 47460018 + 0 NA Intergenic Intergenic 15783 ENSMUSG00000111755.1 ENSMUSG00000111755 ENSMUST00000214343 Gm47160 TEC Interval_151855 chr7 127135601 127136583 + 0 NA exon (ENSMUSG00000051457.7, exon 2 of 2) protein_coding-exon (ENSMUSG00000051457.7, exon 2 of 2) 474 ENSMUSG00000051457.7 ENSMUSG00000051457 ENSMUST00000049931 Spn protein_coding Interval_111660 chr4 25414935 25415200 + 0 NA Intergenic Intergenic -4282 ENSMUSG00000082451.1 ENSMUSG00000082451 ENSMUST00000121579 Gm11894 processed_pseudogene Interval_76435 chr17 80181569 80182671 + 0 NA intron (ENSMUSG00000035473.10, intron 3 of 3) protein_coding-intron (ENSMUSG00000035473.10, intron 5 of 6) 14284 ENSMUSG00000088453.1 ENSMUSG00000088453 ENSMUST00000157828 Gm25706 misc_RNA Interval_129423 chr5 120088457 120088885 + 0 NA Intergenic Intergenic 24336 ENSMUSG00000064617.1 ENSMUSG00000064617 ENSMUST00000082683 n-R5s176 rRNA Interval_148979 chr7 90618514 90619309 + 0 NA intron (ENSMUSG00000052572.19, intron 3 of 27) protein_coding-intron (ENSMUSG00000052572.19, intron 3 of 27) -142916 ENSMUSG00000030614.8 ENSMUSG00000030614 ENSMUST00000123622 Tmem126b protein_coding Interval_58764 chr15 37941130 37943059 + 0 NA intron (ENSMUSG00000022292.16, intron 4 of 5) protein_coding-intron (ENSMUSG00000022292.16, intron 5 of 8) 1698 ENSMUSG00000085442.1 ENSMUSG00000085442 ENSMUST00000148102 Gm3362 processed_pseudogene Interval_123550 chr5 33442875 33443605 + 0 NA Intergenic Intergenic -5776 ENSMUSG00000107248.1 ENSMUSG00000107248 ENSMUST00000200726 Gm43851 lincRNA Interval_132419 chr5 144819937 144820267 + 0 NA intron (ENSMUSG00000045482.16, intron 42 of 70) protein_coding-intron (ENSMUSG00000045482.16, intron 41 of 69) 45677 ENSMUSG00000088685.1 ENSMUSG00000088685 ENSMUST00000158060 Gm23995 snoRNA Interval_118822 chr4 133897217 133901443 + 0 NA Intergenic Intergenic -13047 ENSMUSG00000003644.17 ENSMUSG00000003644 ENSMUST00000173961 Rps6ka1 protein_coding Interval_64007 chr16 5202812 5204459 + 0 NA promoter-TSS (ENSMUSG00000023143.10) protein_coding-promoter-TSS (ENSMUSG00000023143.10) -5870 ENSMUSG00000023143.10 ENSMUSG00000023143 ENSMUST00000144490 Nagpa protein_coding Interval_61198 chr15 79927336 79928271 + 0 NA intron (ENSMUSG00000053411.16, intron 2 of 3) protein_coding-intron (ENSMUSG00000053411.16, intron 2 of 5) 6027 ENSMUSG00000053411.16 ENSMUSG00000053411 ENSMUST00000177061 Cbx7 protein_coding Interval_37214 chr12 59961283 59961670 + 0 NA Intergenic Intergenic 15749 ENSMUSG00000112050.1 ENSMUSG00000112050 ENSMUST00000218423 Gm29809 processed_pseudogene Interval_30371 chr11 93933071 93933314 + 0 NA TTS (ENSMUSG00000059474.13) protein_coding-TTS (ENSMUSG00000059474.13) 7652 ENSMUSG00000059474.13 ENSMUSG00000059474 ENSMUST00000155841 Mbtd1 protein_coding Interval_17510 chr10 77333681 77334446 + 0 NA intron (ENSMUSG00000020262.15, intron 2 of 2) protein_coding-intron (ENSMUSG00000020262.15, intron 2 of 10) 71615 ENSMUSG00000020260.9 ENSMUSG00000020260 ENSMUST00000218117 Pofut2 protein_coding Interval_121664 chr5 4798350 4798691 + 0 NA intron (ENSMUSG00000105560.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000105560.1, intron 1 of 2) 574 ENSMUSG00000105560.1 ENSMUSG00000105560 ENSMUST00000196517 Gm42744 lincRNA Interval_1221 chr1 17250280 17251442 + 0 NA promoter-TSS (ENSMUSG00000100272.1) processed_pseudogene-promoter-TSS (ENSMUSG00000100272.1) -369 ENSMUSG00000100272.1 ENSMUSG00000100272 ENSMUST00000187478 Gm28785 processed_pseudogene Interval_29029 chr11 79979318 79980961 + 0 NA Intergenic Intergenic -12967 ENSMUSG00000017548.15 ENSMUSG00000017548 ENSMUST00000144188 Suz12 protein_coding Interval_123139 chr5 30046684 30046893 + 0 NA Intergenic Intergenic 26788 ENSMUSG00000025747.12 ENSMUSG00000025747 ENSMUST00000138520 Tyms protein_coding Interval_119248 chr4 136444494 136445272 + 0 NA TTS (ENSMUSG00000070687.11) protein_coding-TTS (ENSMUSG00000070687.11) -17367 ENSMUSG00000066178.4 ENSMUSG00000066178 ENSMUST00000084593 6030445D17Rik lincRNA Interval_72850 chr17 32643321 32643767 + 0 NA intron (ENSMUSG00000117459.1, intron 1 of 7) unprocessed_pseudogene-intron (ENSMUSG00000117459.1, intron 1 of 7) 819 ENSMUSG00000117459.1 ENSMUSG00000117459 ENSMUST00000234094 Cyp4f38-ps unprocessed_pseudogene Interval_72246 chr17 28787390 28788080 + 0 NA Intergenic Intergenic -13622 ENSMUSG00000063952.16 ENSMUSG00000063952 ENSMUST00000127007 Brpf3 protein_coding Interval_26609 chr11 59201878 59202975 + 0 NA promoter-TSS (ENSMUSG00000036860.14) protein_coding-promoter-TSS (ENSMUSG00000036860.14) -41 ENSMUSG00000085882.1 ENSMUSG00000085882 ENSMUST00000154354 2610507I01Rik processed_transcript Interval_42703 chr13 18199183 18199945 + 0 NA intron (ENSMUSG00000009734.18, intron 3 of 5) protein_coding-intron (ENSMUSG00000009734.18, intron 3 of 7) -99362 ENSMUSG00000113470.1 ENSMUSG00000113470 ENSMUST00000220795 4930448F12Rik lincRNA Interval_166494 chr9 60075003 60075358 + 0 NA intron (ENSMUSG00000032289.15, intron 6 of 16) protein_coding-intron (ENSMUSG00000032289.15, intron 1 of 11) -33001 ENSMUSG00000088090.1 ENSMUSG00000088090 ENSMUST00000157465 Gm23668 rRNA Interval_22158 chr11 6697740 6697954 + 0 NA Intergenic Intergenic 12023 ENSMUSG00000083075.1 ENSMUSG00000083075 ENSMUST00000121445 Gm11980 processed_pseudogene Interval_134231 chr6 23280321 23281694 + 0 NA intron (ENSMUSG00000017978.18, intron 28 of 29) protein_coding-intron (ENSMUSG00000017978.18, intron 28 of 29) 29874 ENSMUSG00000106775.1 ENSMUSG00000106775 ENSMUST00000202489 C130093G08Rik TEC Interval_3263 chr1 55226124 55226763 + 0 NA exon (ENSMUSG00000025978.14, exon 1 of 9) protein_coding-exon (ENSMUSG00000025978.14, exon 1 of 9) 145 ENSMUSG00000097649.2 ENSMUSG00000097649 ENSMUST00000209801 Gm10561 antisense Interval_38200 chr12 76340729 76341321 + 0 NA Intergenic Intergenic 4356 ENSMUSG00000112096.1 ENSMUSG00000112096 ENSMUST00000220077 A430103D13Rik TEC Interval_159908 chr8 105117092 105117809 + 0 NA Intergenic Intergenic 6826 ENSMUSG00000110502.1 ENSMUSG00000110502 ENSMUST00000212292 Gm8804 processed_pseudogene Interval_168200 chr9 77930288 77930929 + 0 NA intron (ENSMUSG00000032349.13, intron 1 of 5) protein_coding-intron (ENSMUSG00000032349.13, intron 1 of 7) 13174 ENSMUSG00000032349.13 ENSMUSG00000032349 ENSMUST00000134072 Elovl5 protein_coding Interval_66148 chr16 31947833 31949008 + 0 NA promoter-TSS (ENSMUSG00000022774.13) protein_coding-promoter-TSS (ENSMUSG00000022774.13) 74 ENSMUSG00000107002.1 ENSMUSG00000107002 ENSMUST00000202722 0610012G03Rik protein_coding Interval_58252 chr15 31397529 31397804 + 0 NA Intergenic Intergenic 29304 ENSMUSG00000115406.1 ENSMUSG00000115406 ENSMUST00000227460 Gm49300 TEC Interval_123129 chr5 29956465 29957391 + 0 NA Intergenic Intergenic -6210 ENSMUSG00000105926.1 ENSMUSG00000105926 ENSMUST00000199654 Gm43386 TEC Interval_100306 chr2 168294758 168294992 + 0 NA exon (ENSMUSG00000086783.1, exon 1 of 2) lincRNA-exon (ENSMUSG00000086783.1, exon 1 of 2) 246 ENSMUSG00000086783.1 ENSMUSG00000086783 ENSMUST00000148309 Gm14262 lincRNA Interval_17529 chr10 77542215 77543870 + 0 NA intron (ENSMUSG00000000290.13, intron 3 of 13) protein_coding-intron (ENSMUSG00000000290.13, intron 3 of 15) 12668 ENSMUSG00000000290.13 ENSMUSG00000000290 ENSMUST00000153541 Itgb2 protein_coding Interval_106581 chr3 97507167 97507858 + 0 NA Intergenic Intergenic -85492 ENSMUSG00000051392.5 ENSMUSG00000051392 ENSMUST00000060912 Olfr1402 protein_coding Interval_142440 chr6 142343707 142343955 + 0 NA Intergenic Intergenic -1836 ENSMUSG00000041671.13 ENSMUSG00000041671 ENSMUST00000153912 Pyroxd1 protein_coding Interval_106853 chr3 101311111 101311340 + 0 NA TTS (ENSMUSG00000106316.1) processed_pseudogene-TTS (ENSMUSG00000106316.1) 379 ENSMUSG00000106316.1 ENSMUSG00000106316 ENSMUST00000197441 Gm43467 processed_pseudogene Interval_139165 chr6 96622691 96623174 + 0 NA intron (ENSMUSG00000059187.12, intron 3 of 4) protein_coding-intron (ENSMUSG00000059187.12, intron 2 of 3) -62068 ENSMUSG00000077598.1 ENSMUSG00000077598 ENSMUST00000104410 Gm26011 snRNA Interval_139950 chr6 113000614 113002329 + 0 NA Intergenic Intergenic 9349 ENSMUSG00000108215.1 ENSMUSG00000108215 ENSMUST00000203976 Gm8083 processed_pseudogene Interval_147239 chr7 64952215 64952451 + 0 NA intron (ENSMUSG00000030518.17, intron 2 of 9) protein_coding-intron (ENSMUSG00000030518.17, intron 2 of 9) 4243 ENSMUSG00000093212.1 ENSMUSG00000093212 ENSMUST00000175471 Gm25249 miRNA Interval_147384 chr7 66310075 66310599 + 0 NA exon (ENSMUSG00000109119.1, exon 1 of 1) antisense-exon (ENSMUSG00000109119.1, exon 1 of 1) 1142 ENSMUSG00000109119.1 ENSMUSG00000109119 ENSMUST00000207140 Gm44752 antisense Interval_131735 chr5 139566832 139567215 + 0 NA Intergenic Intergenic 23125 ENSMUSG00000029546.12 ENSMUSG00000029546 ENSMUST00000174792 Uncx protein_coding Interval_23593 chr11 23643173 23643899 + 0 NA Intergenic Intergenic -9905 ENSMUSG00000042208.15 ENSMUSG00000042208 ENSMUST00000131612 0610010F05Rik protein_coding Interval_67715 chr16 56222399 56223192 + 0 NA intron (ENSMUSG00000035270.15, intron 5 of 18) protein_coding-intron (ENSMUSG00000035270.15, intron 5 of 19) 18482 ENSMUSG00000035270.15 ENSMUSG00000035270 ENSMUST00000159842 Impg2 protein_coding Interval_78286 chr18 11613662 11614052 + 0 NA Intergenic Intergenic -11058 ENSMUSG00000117535.1 ENSMUSG00000117535 ENSMUST00000234170 Gm50067 processed_pseudogene Interval_110238 chr3 154680506 154680809 + 0 NA TTS (ENSMUSG00000103204.1) sense_overlapping-TTS (ENSMUSG00000103204.1) 23956 ENSMUSG00000103204.1 ENSMUSG00000103204 ENSMUST00000195806 Gm38139 sense_overlapping Interval_32389 chr11 107298861 107299068 + 0 NA intron (ENSMUSG00000040430.18, intron 4 of 7) protein_coding-intron (ENSMUSG00000040430.18, intron 3 of 7) -31744 ENSMUSG00000081995.1 ENSMUSG00000081995 ENSMUST00000119399 Gm11719 processed_pseudogene Interval_61718 chr15 83562091 83564671 + 0 NA promoter-TSS (ENSMUSG00000041736.7) protein_coding-promoter-TSS (ENSMUSG00000041736.7) -494 ENSMUSG00000041736.7 ENSMUSG00000041736 ENSMUST00000208463 Tspo protein_coding Interval_38400 chr12 78731678 78731982 + 0 NA TTS (ENSMUSG00000056987.8) protein_coding-TTS (ENSMUSG00000056987.8) -17096 ENSMUSG00000021112.9 ENSMUSG00000021112 ENSMUST00000219180 Mpp5 protein_coding Interval_114591 chr4 82815458 82815629 + 0 NA intron (ENSMUSG00000028403.15, intron 6 of 7) protein_coding-intron (ENSMUSG00000028403.15, intron 7 of 8) 44018 ENSMUSG00000028403.15 ENSMUSG00000028403 ENSMUST00000156055 Zdhhc21 protein_coding Interval_116859 chr4 117770842 117771525 + 0 NA Intergenic Intergenic -5535 ENSMUSG00000048626.5 ENSMUSG00000048626 ENSMUST00000062747 Klf17 protein_coding Interval_5557 chr1 89791332 89791501 + 0 NA intron (ENSMUSG00000055013.16, intron 12 of 16) protein_coding-intron (ENSMUSG00000055013.16, intron 13 of 17) 2253 ENSMUSG00000055013.16 ENSMUSG00000055013 ENSMUST00000212924 Agap1 protein_coding Interval_66053 chr16 31281834 31282127 + 0 NA Intergenic Intergenic -6988 ENSMUSG00000047714.14 ENSMUSG00000047714 ENSMUST00000115233 Ppp1r2 protein_coding Interval_147812 chr7 73713656 73713987 + 0 NA Intergenic Intergenic -7281 ENSMUSG00000108687.1 ENSMUSG00000108687 ENSMUST00000206237 Gm45007 processed_pseudogene Interval_71482 chr17 24062783 24063788 + 0 NA intron (ENSMUSG00000016946.6, intron 1 of 5) protein_coding-intron (ENSMUSG00000016946.6, intron 1 of 5) -2968 ENSMUSG00000016946.6 ENSMUSG00000016946 ENSMUST00000234555 Kctd5 protein_coding Interval_79890 chr18 35762892 35764553 + 0 NA Intergenic Intergenic -6596 ENSMUSG00000091842.2 ENSMUSG00000091842 ENSMUST00000165299 Gm16490 processed_pseudogene Interval_106343 chr3 95507171 95507833 + 0 NA intron (ENSMUSG00000028111.4, intron 7 of 7) protein_coding-intron (ENSMUSG00000028111.4, intron 7 of 7) 8246 ENSMUSG00000028111.4 ENSMUSG00000028111 ENSMUST00000015664 Ctsk protein_coding Interval_163864 chr9 27277284 27277501 + 0 NA Intergenic Intergenic 15952 ENSMUSG00000111387.1 ENSMUSG00000111387 ENSMUST00000217080 Gm48803 lincRNA Interval_73343 chr17 36314878 36316072 + 0 NA Intergenic Intergenic 10670 ENSMUSG00000024448.14 ENSMUSG00000024448 ENSMUST00000172576 H2-M10.1 protein_coding Interval_21467 chr10 128766962 128767513 + 0 NA TTS (ENSMUSG00000064030.15) protein_coding-TTS (ENSMUSG00000064030.15) 10013 ENSMUSG00000045055.5 ENSMUSG00000045055 ENSMUST00000059546 Rpsa-ps2 processed_pseudogene Interval_12594 chr10 3746393 3747208 + 0 NA intron (ENSMUSG00000040624.18, intron 1 of 7) protein_coding-intron (ENSMUSG00000040624.18, intron 1 of 16) -88079 ENSMUSG00000040624.18 ENSMUSG00000040624 ENSMUST00000141367 Plekhg1 protein_coding Interval_158044 chr8 78276231 78277125 + 0 NA intron (ENSMUSG00000037101.16, intron 1 of 1) protein_coding-intron (ENSMUSG00000037101.16, intron 7 of 13) 63328 ENSMUSG00000037101.16 ENSMUSG00000037101 ENSMUST00000124713 Ttc29 protein_coding Interval_152578 chr7 134761599 134762493 + 0 NA intron (ENSMUSG00000058325.6, intron 13 of 20) protein_coding-intron (ENSMUSG00000058325.6, intron 13 of 51) 91359 ENSMUSG00000058325.6 ENSMUSG00000058325 ENSMUST00000210121 Dock1 protein_coding Interval_55369 chr14 85843403 85843792 + 0 NA Intergenic Intergenic 188393 ENSMUSG00000115653.1 ENSMUSG00000115653 ENSMUST00000228318 Gm49059 processed_pseudogene Interval_71422 chr17 23660333 23661830 + 0 NA promoter-TSS (ENSMUSG00000043782.9) protein_coding-promoter-TSS (ENSMUSG00000043782.9) -5045 ENSMUSG00000043782.9 ENSMUSG00000043782 ENSMUST00000233930 Bicdl2 protein_coding Interval_139180 chr6 96930996 96931676 + 0 NA intron (ENSMUSG00000046500.8, intron 3 of 5) protein_coding-intron (ENSMUSG00000046500.8, intron 3 of 5) 129057 ENSMUSG00000046500.8 ENSMUSG00000046500 ENSMUST00000203930 Tafa4 protein_coding Interval_122721 chr5 24890804 24891329 + 0 NA intron (ENSMUSG00000028944.14, intron 1 of 9) protein_coding-intron (ENSMUSG00000028944.14, intron 5 of 15) -11503 ENSMUSG00000086446.1 ENSMUSG00000086446 ENSMUST00000134633 Prkag2os1 antisense Interval_44172 chr13 41486981 41487358 + 0 NA promoter-TSS (ENSMUSG00000114585.1) antisense-promoter-TSS (ENSMUSG00000114585.1) 22 ENSMUSG00000114585.1 ENSMUSG00000114585 ENSMUST00000225298 Gm32401 antisense Interval_172219 chrX 10117051 10117707 + 0 NA intron (ENSMUSG00000031174.17, intron 15 of 15) protein_coding-intron (ENSMUSG00000090084.7, intron 1 of 9) 297 ENSMUSG00000090084.7 ENSMUSG00000090084 ENSMUST00000147334 Srpx protein_coding Interval_60969 chr15 78368314 78369553 + 0 NA promoter-TSS (ENSMUSG00000070235.1) misc_RNA-promoter-TSS (ENSMUSG00000070235.1) -315 ENSMUSG00000070235.1 ENSMUSG00000070235 ENSMUST00000093723 Gm26329 misc_RNA Interval_37701 chr12 71237103 71237658 + 0 NA intron (ENSMUSG00000034601.17, intron 29 of 29) protein_coding-intron (ENSMUSG00000034601.17, intron 27 of 27) -31936 ENSMUSG00000113878.1 ENSMUSG00000113878 ENSMUST00000222488 Gm19045 processed_pseudogene Interval_78343 chr18 12076153 12076393 + 0 NA intron (ENSMUSG00000049411.15, intron 3 of 12) protein_coding-intron (ENSMUSG00000049411.15, intron 3 of 12) 45207 ENSMUSG00000049411.15 ENSMUSG00000049411 ENSMUST00000234833 Tmem241 protein_coding Interval_80677 chr18 46225665 46227766 + 0 NA Intergenic Intergenic 27694 ENSMUSG00000103616.1 ENSMUSG00000103616 ENSMUST00000195587 1700018A14Rik TEC Interval_65713 chr16 25849482 25849652 + 0 NA intron (ENSMUSG00000022510.14, intron 4 of 13) protein_coding-intron (ENSMUSG00000022510.14, intron 2 of 11) -106908 ENSMUSG00000090257.1 ENSMUSG00000090257 ENSMUST00000161614 Gm4524 antisense Interval_5666 chr1 90663742 90663956 + 0 NA Intergenic Intergenic -11312 ENSMUSG00000056128.3 ENSMUSG00000056128 ENSMUST00000070048 Gm9991 lincRNA Interval_171058 chr9 114044631 114046909 + 0 NA intron (ENSMUSG00000032507.15, intron 1 of 3) protein_coding-intron (ENSMUSG00000032507.15, intron 1 of 3) -11370 ENSMUSG00000086596.2 ENSMUSG00000086596 ENSMUST00000135338 Susd5 protein_coding Interval_10085 chr1 165700994 165701457 + 0 NA intron (ENSMUSG00000040723.14, intron 2 of 2) protein_coding-intron (ENSMUSG00000040723.14, intron 1 of 6) 6460 ENSMUSG00000105249.1 ENSMUSG00000105249 ENSMUST00000196594 Gm44458 miRNA Interval_90316 chr2 29744177 29744495 + 0 NA TTS (ENSMUSG00000079497.4) protein_coding-TTS (ENSMUSG00000079497.4) -5671 ENSMUSG00000048316.3 ENSMUSG00000048316 ENSMUST00000051212 Gm9823 pseudogene Interval_102686 chr3 30012316 30013521 + 0 NA exon (ENSMUSG00000027684.16, exon 1 of 15) protein_coding-exon (ENSMUSG00000027684.16, exon 1 of 15) -4610 ENSMUSG00000085702.8 ENSMUSG00000085702 ENSMUST00000173827 Mecomos antisense Interval_69569 chr16 94335955 94336143 + 0 NA exon (ENSMUSG00000022941.8, exon 4 of 4) protein_coding-exon (ENSMUSG00000022941.8, exon 4 of 4) 7629 ENSMUSG00000022941.8 ENSMUSG00000022941 ENSMUST00000023660 Ripply3 protein_coding Interval_61575 chr15 82563690 82565467 + 0 NA exon (ENSMUSG00000116319.1, exon 1 of 1) TEC-exon (ENSMUSG00000116319.1, exon 1 of 1) 733 ENSMUSG00000116319.1 ENSMUSG00000116319 ENSMUST00000229062 Gm49429 TEC Interval_35732 chr12 28703885 28704960 + 0 NA intron (ENSMUSG00000020628.16, intron 6 of 6) protein_coding-intron (ENSMUSG00000020628.16, intron 6 of 11) 25097 ENSMUSG00000098579.1 ENSMUSG00000098579 ENSMUST00000184974 Mir6937 miRNA Interval_1303 chr1 19449496 19450843 + 0 NA Intergenic Intergenic 63750 ENSMUSG00000084668.1 ENSMUSG00000084668 ENSMUST00000122719 Gm24633 snoRNA Interval_75172 chr17 64312078 64312493 + 0 NA intron (ENSMUSG00000024083.16, intron 2 of 4) protein_coding-intron (ENSMUSG00000024083.16, intron 1 of 8) 9330 ENSMUSG00000080455.1 ENSMUSG00000080455 ENSMUST00000116805 Gm24194 miRNA Interval_48731 chr13 102537326 102538167 + 0 NA Intergenic Intergenic 52539 ENSMUSG00000114846.1 ENSMUSG00000114846 ENSMUST00000225128 Gm29927 lincRNA Interval_160434 chr8 109478416 109479751 + 0 NA Intergenic Intergenic -15961 ENSMUSG00000031727.8 ENSMUSG00000031727 ENSMUST00000212003 Pmfbp1 protein_coding Interval_90982 chr2 33913113 33913762 + 0 NA Intergenic Intergenic 28708 ENSMUSG00000085987.2 ENSMUSG00000085987 ENSMUST00000134271 Gm13403 lincRNA Interval_56075 chr14 105364703 105365553 + 0 NA Intergenic Intergenic -62431 ENSMUSG00000115548.1 ENSMUSG00000115548 ENSMUST00000226670 5430440P10Rik lincRNA Interval_65076 chr16 18889564 18890071 + 0 NA intron (ENSMUSG00000022702.16, intron 1 of 15) protein_coding-intron (ENSMUSG00000022702.16, intron 1 of 24) -13208 ENSMUSG00000022706.16 ENSMUSG00000022706 ENSMUST00000232123 Mrpl40 protein_coding Interval_74606 chr17 53673279 53673891 + 0 NA TTS (ENSMUSG00000000708.14) protein_coding-TTS (ENSMUSG00000000708.14) 14274 ENSMUSG00000000708.14 ENSMUSG00000000708 ENSMUST00000171072 Kat2b protein_coding Interval_29163 chr11 80889150 80890379 + 0 NA exon (ENSMUSG00000020704.13, exon 6 of 10) protein_coding-exon (ENSMUSG00000020704.13, exon 6 of 10) 31399 ENSMUSG00000053184.15 ENSMUSG00000053184 ENSMUST00000103222 Spaca3 protein_coding Interval_88054 chr19 58469359 58469814 + 0 NA Intergenic Intergenic -15120 ENSMUSG00000025089.15 ENSMUSG00000025089 ENSMUST00000135730 Gfra1 protein_coding Interval_165811 chr9 53348767 53349151 + 0 NA intron (ENSMUSG00000034584.3, intron 1 of 1) protein_coding-intron (ENSMUSG00000034584.3, intron 3 of 5) 7770 ENSMUSG00000034584.3 ENSMUSG00000034584 ENSMUST00000139096 Exph5 protein_coding Interval_124291 chr5 43662050 43662989 + 0 NA exon (ENSMUSG00000039765.15, exon 1 of 40) protein_coding-exon (ENSMUSG00000039765.15, exon 1 of 40) -9770 ENSMUSG00000039765.15 ENSMUSG00000039765 ENSMUST00000127355 Cc2d2a protein_coding Interval_13151 chr10 12548324 12550663 + 0 NA promoter-TSS (ENSMUSG00000019820.11) protein_coding-promoter-TSS (ENSMUSG00000019820.11) -127897 ENSMUSG00000112816.1 ENSMUSG00000112816 ENSMUST00000220361 Gm48798 TEC Interval_140589 chr6 119902218 119903606 + 0 NA promoter-TSS (ENSMUSG00000097831.1) lincRNA-promoter-TSS (ENSMUSG00000097831.1) -259 ENSMUSG00000097831.1 ENSMUSG00000097831 ENSMUST00000180527 4930540M05Rik lincRNA Interval_108241 chr3 122904014 122904720 + 0 NA intron (ENSMUSG00000097852.5, intron 3 of 5) antisense-intron (ENSMUSG00000097852.5, intron 3 of 6) 9295 ENSMUSG00000023057.5 ENSMUSG00000023057 ENSMUST00000023820 Fabp2 protein_coding Interval_39520 chr12 89257164 89257461 + 0 NA intron (ENSMUSG00000066392.12, intron 4 of 18) protein_coding-intron (ENSMUSG00000066392.12, intron 5 of 19) -1951 ENSMUSG00000103136.1 ENSMUSG00000103136 ENSMUST00000194420 Gm37980 TEC Interval_81725 chr18 63907226 63907762 + 0 NA intron (ENSMUSG00000040560.10, intron 21 of 26) protein_coding-intron (ENSMUSG00000040560.10, intron 22 of 27) 1662 ENSMUSG00000084642.1 ENSMUSG00000084642 ENSMUST00000122693 Gm24384 snRNA Interval_105751 chr3 89142685 89143423 + 0 NA exon (ENSMUSG00000041237.12, exon 8 of 11) protein_coding-exon (ENSMUSG00000041237.12, exon 8 of 11) 6880 ENSMUSG00000041237.12 ENSMUSG00000041237 ENSMUST00000148097 Pklr protein_coding Interval_88502 chr2 5663774 5663991 + 0 NA intron (ENSMUSG00000039145.16, intron 1 of 1) protein_coding-intron (ENSMUSG00000039145.16, intron 1 of 10) 50621 ENSMUSG00000039145.16 ENSMUSG00000039145 ENSMUST00000155927 Camk1d protein_coding Interval_39065 chr12 84784267 84785430 + 0 NA TTS (ENSMUSG00000002020.15) protein_coding-TTS (ENSMUSG00000002020.15) 11557 ENSMUSG00000021241.7 ENSMUSG00000021241 ENSMUST00000220726 Isca2 protein_coding Interval_55491 chr14 88727507 88728372 + 0 NA intron (ENSMUSG00000115623.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000115623.1, intron 1 of 2) 91906 ENSMUSG00000115623.1 ENSMUSG00000115623 ENSMUST00000227074 Gm41225 lincRNA Interval_152274 chr7 131298193 131298573 + 0 NA exon (ENSMUSG00000006204.7, exon 67 of 71) protein_coding-exon (ENSMUSG00000006204.7, exon 67 of 71) 23909 ENSMUSG00000040205.8 ENSMUSG00000040205 ENSMUST00000046611 Cuzd1 protein_coding Interval_40343 chr12 104029640 104030411 + 0 NA exon (ENSMUSG00000041567.3, exon 5 of 5) protein_coding-exon (ENSMUSG00000041567.3, exon 5 of 5) -5598 ENSMUSG00000102694.1 ENSMUSG00000102694 ENSMUST00000191930 Gm37496 TEC Interval_15570 chr10 51614862 51615965 + 0 NA exon (ENSMUSG00000019905.8, exon 6 of 6) protein_coding-exon (ENSMUSG00000019905.8, exon 6 of 6) 16018 ENSMUSG00000019905.8 ENSMUSG00000019905 ENSMUST00000218684 Gprc6a protein_coding Interval_46407 chr13 64840922 64841106 + 0 NA intron (ENSMUSG00000033063.8, intron 3 of 23) protein_coding-intron (ENSMUSG00000033063.8, intron 3 of 23) -72958 ENSMUSG00000114179.1 ENSMUSG00000114179 ENSMUST00000221990 Eif1-ps2 processed_pseudogene Interval_41913 chr13 4304572 4305212 + 0 NA Intergenic Intergenic -25459 ENSMUSG00000021211.4 ENSMUSG00000021211 ENSMUST00000021632 Akr1c12 protein_coding Interval_22678 chr11 12889835 12890021 + 0 NA Intergenic Intergenic 48010 ENSMUSG00000083859.1 ENSMUSG00000083859 ENSMUST00000118518 Gm12003 processed_pseudogene Interval_60621 chr15 75746491 75748970 + 0 NA exon (ENSMUSG00000047591.5, exon 1 of 1) protein_coding-exon (ENSMUSG00000047591.5, exon 1 of 1) 498 ENSMUSG00000047591.5 ENSMUSG00000047591 ENSMUST00000062002 Mafa protein_coding Interval_51767 chr14 32076606 32078058 + 0 NA Intergenic Intergenic 8360 ENSMUSG00000021905.14 ENSMUSG00000021905 ENSMUST00000112000 Dph3 protein_coding Interval_17610 chr10 78163868 78164383 + 0 NA intron (ENSMUSG00000053329.7, intron 4 of 5) protein_coding-intron (ENSMUSG00000053329.7, intron 5 of 6) 3317 ENSMUSG00000053329.7 ENSMUSG00000053329 ENSMUST00000218286 Gatd3a protein_coding Interval_53715 chr14 61112349 61112801 + 0 NA Intergenic Intergenic 49148 ENSMUSG00000115627.1 ENSMUSG00000115627 ENSMUST00000227839 Gm41168 lincRNA Interval_133961 chr6 16733257 16734500 + 0 NA Intergenic Intergenic -43646 ENSMUSG00000107022.1 ENSMUSG00000107022 ENSMUST00000201757 Gm36669 lincRNA Interval_102430 chr3 25558680 25558952 + 0 NA intron (ENSMUSG00000063887.13, intron 5 of 7) protein_coding-intron (ENSMUSG00000063887.13, intron 3 of 5) 12796 ENSMUSG00000087945.1 ENSMUSG00000087945 ENSMUST00000157320 Gm24250 rRNA Interval_117422 chr4 123609336 123609681 + 0 NA intron (ENSMUSG00000028649.21, intron 1 of 97) protein_coding-intron (ENSMUSG00000028649.21, intron 1 of 92) 4235 ENSMUSG00000028649.21 ENSMUSG00000028649 ENSMUST00000146000 Macf1 protein_coding Interval_3791 chr1 63104654 63104863 + 0 NA intron (ENSMUSG00000040865.15, intron 1 of 10) protein_coding-intron (ENSMUSG00000040865.15, intron 1 of 10) -9982 ENSMUSG00000084799.7 ENSMUSG00000084799 ENSMUST00000188602 Ino80dos lincRNA Interval_23336 chr11 21518567 21519087 + 0 NA Intergenic Intergenic -11109 ENSMUSG00000078962.4 ENSMUSG00000078962 ENSMUST00000165732 4932414J04Rik lincRNA Interval_32576 chr11 108781750 108781992 + 0 NA intron (ENSMUSG00000020728.17, intron 4 of 5) protein_coding-intron (ENSMUSG00000020728.17, intron 24 of 27) -38462 ENSMUSG00000085811.1 ENSMUSG00000085811 ENSMUST00000143781 Cep112it sense_intronic Interval_16678 chr10 66992715 66993076 + 0 NA Intergenic Intergenic -12180 ENSMUSG00000112925.1 ENSMUSG00000112925 ENSMUST00000218205 Gm31763 antisense Interval_140483 chr6 118686623 118687014 + 0 NA intron (ENSMUSG00000051331.16, intron 12 of 44) protein_coding-intron (ENSMUSG00000051331.16, intron 14 of 46) -67594 ENSMUSG00000100867.1 ENSMUSG00000100867 ENSMUST00000185373 Gm18981 processed_pseudogene Interval_70915 chr17 15848273 15848986 + 0 NA Intergenic Intergenic 3349 ENSMUSG00000116545.1 ENSMUSG00000116545 ENSMUST00000231929 Eif3s6-ps3 processed_pseudogene Interval_132747 chr5 147554314 147555487 + 0 NA Intergenic Intergenic 91907 ENSMUSG00000029648.13 ENSMUSG00000029648 ENSMUST00000031652 Flt1 protein_coding Interval_49446 chr13 112068326 112068575 + 0 NA Intergenic Intergenic 62948 ENSMUSG00000086092.1 ENSMUSG00000086092 ENSMUST00000156109 Gm15323 lincRNA Interval_19859 chr10 110583662 110583919 + 0 NA Intergenic Intergenic -12476 ENSMUSG00000112398.1 ENSMUSG00000112398 ENSMUST00000219459 9230102K24Rik lincRNA Interval_86794 chr19 43918998 43919293 + 0 NA intron (ENSMUSG00000025195.9, intron 1 of 15) protein_coding-intron (ENSMUSG00000025195.9, intron 1 of 15) -1328 ENSMUSG00000118000.1 ENSMUSG00000118000 ENSMUST00000235838 Gm50217 lincRNA Interval_58483 chr15 35069360 35069842 + 0 NA intron (ENSMUSG00000022329.15, intron 6 of 10) protein_coding-intron (ENSMUSG00000022329.15, intron 6 of 10) -109364 ENSMUSG00000022329.15 ENSMUSG00000022329 ENSMUST00000138841 Stk3 protein_coding Interval_7228 chr1 128038090 128039418 + 0 NA exon (ENSMUSG00000058603.10, exon 1 of 1) processed_pseudogene-exon (ENSMUSG00000058603.10, exon 1 of 1) 185 ENSMUSG00000058603.10 ENSMUSG00000058603 ENSMUST00000121497 Rpl28-ps1 processed_pseudogene Interval_171914 chr9 122490320 122491327 + 0 NA Intergenic Intergenic 12073 ENSMUSG00000110725.1 ENSMUSG00000110725 ENSMUST00000214531 Gm47129 processed_pseudogene Interval_92760 chr2 65189460 65189849 + 0 NA intron (ENSMUSG00000034903.18, intron 1 of 3) protein_coding-intron (ENSMUSG00000034903.18, intron 1 of 12) -49102 ENSMUSG00000086881.1 ENSMUSG00000086881 ENSMUST00000137582 Gm13594 antisense Interval_144056 chr7 19217963 19218583 + 0 NA intron (ENSMUSG00000044317.7, intron 1 of 1) protein_coding-intron (ENSMUSG00000044317.7, intron 1 of 1) 5735 ENSMUSG00000044317.7 ENSMUSG00000044317 ENSMUST00000060225 Gpr4 protein_coding Interval_25578 chr11 49901328 49902574 + 0 NA promoter-TSS (ENSMUSG00000020374.16) protein_coding-promoter-TSS (ENSMUSG00000020374.16) 6220 ENSMUSG00000080487.1 ENSMUSG00000080487 ENSMUST00000116837 Gm23492 miRNA Interval_582 chr1 8094435 8094785 + 0 NA Intergenic Intergenic 358881 ENSMUSG00000102647.1 ENSMUSG00000102647 ENSMUST00000192338 Gm38024 TEC Interval_171581 chr9 119350630 119351239 + 0 NA TTS (ENSMUSG00000036138.16) protein_coding-TTS (ENSMUSG00000036138.16) -6653 ENSMUSG00000035769.9 ENSMUSG00000035769 ENSMUST00000213383 Xylb protein_coding Interval_171456 chr9 118468165 118468939 + 0 NA Intergenic Intergenic -1488 ENSMUSG00000084515.1 ENSMUSG00000084515 ENSMUST00000122566 Gm22479 snRNA Interval_157812 chr8 73838670 73838917 + 0 NA Intergenic Intergenic -32900 ENSMUSG00000110609.1 ENSMUSG00000110609 ENSMUST00000212607 Gm7948 processed_pseudogene Interval_95016 chr2 103073049 103074155 + 0 NA promoter-TSS (ENSMUSG00000010911.12) protein_coding-promoter-TSS (ENSMUSG00000010911.12) -267 ENSMUSG00000010914.10 ENSMUSG00000010914 ENSMUST00000111183 Pdhx protein_coding Interval_146692 chr7 49471366 49471624 + 0 NA exon (ENSMUSG00000102148.1, exon 1 of 1) TEC-exon (ENSMUSG00000102148.1, exon 1 of 1) 1783 ENSMUSG00000102148.1 ENSMUSG00000102148 ENSMUST00000193746 Gm38059 TEC Interval_139883 chr6 112364554 112365703 + 0 NA intron (ENSMUSG00000034387.13, intron 11 of 11) protein_coding-intron (ENSMUSG00000034387.13, intron 11 of 11) 22890 ENSMUSG00000034387.13 ENSMUSG00000034387 ENSMUST00000238755 Ssu2 protein_coding Interval_27407 chr11 67408105 67408829 + 0 NA Intergenic Intergenic 43682 ENSMUSG00000060180.12 ENSMUSG00000060180 ENSMUST00000181027 Myh13 protein_coding Interval_166419 chr9 59308345 59308952 + 0 NA intron (ENSMUSG00000025236.11, intron 3 of 6) protein_coding-intron (ENSMUSG00000025236.11, intron 3 of 6) 17090 ENSMUSG00000025236.11 ENSMUSG00000025236 ENSMUST00000215994 Adpgk protein_coding Interval_127099 chr5 100295119 100295484 + 0 NA intron (ENSMUSG00000085915.1, intron 2 of 4) unprocessed_pseudogene-intron (ENSMUSG00000085915.1, intron 2 of 4) 59818 ENSMUSG00000085915.1 ENSMUSG00000085915 ENSMUST00000150506 Gm8091 unprocessed_pseudogene Interval_147665 chr7 71351346 71352008 + 0 NA exon (ENSMUSG00000099558.1, exon 1 of 3) lincRNA-exon (ENSMUSG00000099558.1, exon 1 of 3) 226 ENSMUSG00000099558.1 ENSMUSG00000099558 ENSMUST00000190004 Gm29295 lincRNA Interval_57676 chr15 15019309 15019968 + 0 NA Intergenic Intergenic -118549 ENSMUSG00000115208.1 ENSMUSG00000115208 ENSMUST00000226940 Gm49118 processed_pseudogene Interval_81550 chr18 61637688 61638711 + 0 NA Intergenic Intergenic -1454 ENSMUSG00000098098.7 ENSMUSG00000098098 ENSMUST00000183087 Bvht lincRNA Interval_126357 chr5 86987753 86989031 + 0 NA intron (ENSMUSG00000106185.1, intron 3 of 3) unprocessed_pseudogene-intron (ENSMUSG00000106185.1, intron 3 of 3) -8767 ENSMUSG00000104802.1 ENSMUSG00000104802 ENSMUST00000200248 Gm5869 processed_pseudogene Interval_64917 chr16 17196250 17196498 + 0 NA intron (ENSMUSG00000038965.17, intron 1 of 4) protein_coding-intron (ENSMUSG00000038965.17, intron 1 of 3) 5085 ENSMUSG00000038965.17 ENSMUSG00000038965 ENSMUST00000231557 Ube2l3 protein_coding Interval_170341 chr9 107288194 107291148 + 0 NA promoter-TSS (ENSMUSG00000032577.16) protein_coding-promoter-TSS (ENSMUSG00000032577.16) -327 ENSMUSG00000032577.16 ENSMUSG00000032577 ENSMUST00000141596 Mapkapk3 protein_coding Interval_131353 chr5 136664460 136664981 + 0 NA Intergenic Intergenic -33059 ENSMUSG00000005474.9 ENSMUSG00000005474 ENSMUST00000197849 Myl10 protein_coding Interval_172839 chrX 51204735 51206539 + 0 NA intron (ENSMUSG00000036109.17, intron 1 of 1) protein_coding-intron (ENSMUSG00000036109.17, intron 1 of 6) 895 ENSMUSG00000036109.17 ENSMUSG00000036109 ENSMUST00000156028 Mbnl3 protein_coding Interval_26661 chr11 59531139 59533064 + 0 NA Intergenic Intergenic -5350 ENSMUSG00000020472.14 ENSMUSG00000020472 ENSMUST00000139707 Zkscan17 protein_coding Interval_103421 chr3 41470982 41471201 + 0 NA Intergenic Intergenic 10794 ENSMUSG00000105260.1 ENSMUSG00000105260 ENSMUST00000196123 Gm40040 lincRNA Interval_140794 chr6 121381994 121382278 + 0 NA intron (ENSMUSG00000040797.16, intron 10 of 12) protein_coding-intron (ENSMUSG00000040797.16, intron 11 of 13) 25316 ENSMUSG00000030109.15 ENSMUSG00000030109 ENSMUST00000170339 Slc6a12 protein_coding Interval_76598 chr17 82266727 82267009 + 0 NA Intergenic Intergenic 30991 ENSMUSG00000094390.1 ENSMUSG00000094390 ENSMUST00000174994 Gm23400 miRNA Interval_97295 chr2 133201184 133201932 + 0 NA Intergenic Intergenic 1947 ENSMUSG00000083689.1 ENSMUSG00000083689 ENSMUST00000117717 Gm14094 processed_pseudogene Interval_142048 chr6 136742546 136743232 + 0 NA intron (ENSMUSG00000042638.14, intron 10 of 25) protein_coding-intron (ENSMUSG00000042638.14, intron 10 of 26) 38853 ENSMUSG00000042638.14 ENSMUSG00000042638 ENSMUST00000078095 Gucy2c protein_coding Interval_98143 chr2 148722303 148723217 + 0 NA intron (ENSMUSG00000027438.14, intron 1 of 3) protein_coding-intron (ENSMUSG00000027438.14, intron 1 of 10) 9631 ENSMUSG00000027438.14 ENSMUSG00000027438 ENSMUST00000140647 Napb protein_coding Interval_104543 chr3 67564878 67565238 + 0 NA Intergenic Intergenic 7763 ENSMUSG00000104382.1 ENSMUSG00000104382 ENSMUST00000192586 4930402C01Rik lincRNA Interval_134718 chr6 30736593 30739702 + 0 NA promoter-TSS (ENSMUSG00000051855.15) protein_coding-promoter-TSS (ENSMUSG00000051855.15) 97 ENSMUSG00000051855.15 ENSMUSG00000051855 ENSMUST00000149496 Mest protein_coding Interval_95629 chr2 113110417 113110816 + 0 NA intron (ENSMUSG00000057378.15, intron 1 of 103) protein_coding-intron (ENSMUSG00000057378.15, intron 1 of 102) -175116 ENSMUSG00000041255.2 ENSMUSG00000041255 ENSMUST00000040856 Tmco5b protein_coding Interval_161075 chr8 117314331 117315328 + 0 NA intron (ENSMUSG00000034390.16, intron 1 of 10) protein_coding-intron (ENSMUSG00000034390.16, intron 1 of 20) -108587 ENSMUSG00000034390.16 ENSMUSG00000034390 ENSMUST00000212884 Cmip protein_coding Interval_35933 chr12 32138015 32138313 + 0 NA Intergenic Intergenic -14462 ENSMUSG00000112071.1 ENSMUSG00000112071 ENSMUST00000218836 5430401H09Rik lincRNA Interval_119565 chr4 138404802 138405334 + 0 NA Intergenic Intergenic -8540 ENSMUSG00000078235.3 ENSMUSG00000078235 ENSMUST00000105032 Fam43b protein_coding Interval_134500 chr6 29164096 29165018 + 0 NA exon (ENSMUSG00000029701.15, exon 1 of 19) protein_coding-exon (ENSMUSG00000029701.15, exon 1 of 19) -4626 ENSMUSG00000029701.15 ENSMUSG00000029701 ENSMUST00000172346 Rbm28 protein_coding Interval_163277 chr9 20503259 20504596 + 0 NA intron (ENSMUSG00000060510.14, intron 4 of 6) protein_coding-intron (ENSMUSG00000060510.14, intron 6 of 8) -11185 ENSMUSG00000059475.13 ENSMUSG00000059475 ENSMUST00000164250 Zfp426 protein_coding Interval_130892 chr5 133661759 133662042 + 0 NA Intergenic Intergenic -63494 ENSMUSG00000105227.1 ENSMUSG00000105227 ENSMUST00000196125 Gm36667 lincRNA Interval_12338 chr1 192208077 192208768 + 0 NA intron (ENSMUSG00000058248.12, intron 1 of 10) protein_coding-intron (ENSMUSG00000058248.12, intron 1 of 10) 71077 ENSMUSG00000097316.2 ENSMUSG00000097316 ENSMUST00000195083 Gm10516 antisense Interval_39582 chr12 91078775 91079143 + 0 NA intron (ENSMUSG00000061533.16, intron 7 of 12) protein_coding-intron (ENSMUSG00000061533.16, intron 2 of 6) 33111 ENSMUSG00000085004.2 ENSMUSG00000085004 ENSMUST00000129932 5430427M07Rik antisense Interval_135123 chr6 35786377 35787328 + 0 NA Intergenic Intergenic -139859 ENSMUSG00000107145.1 ENSMUSG00000107145 ENSMUST00000202865 Gm43442 processed_pseudogene Interval_95733 chr2 115513823 115514300 + 0 NA intron (ENSMUSG00000085582.7, intron 1 of 3) lincRNA-intron (ENSMUSG00000085582.7, intron 1 of 3) 13683 ENSMUSG00000085582.7 ENSMUSG00000085582 ENSMUST00000125147 3110099E03Rik lincRNA Interval_135788 chr6 47336943 47338245 + 0 NA Intergenic Intergenic 95495 ENSMUSG00000107853.1 ENSMUSG00000107853 ENSMUST00000203098 Gm18584 processed_pseudogene Interval_49481 chr13 112351888 112352325 + 0 NA intron (ENSMUSG00000049985.15, intron 7 of 7) protein_coding-intron (ENSMUSG00000049985.15, intron 6 of 10) 15739 ENSMUSG00000114536.1 ENSMUSG00000114536 ENSMUST00000224393 Gm48837 antisense Interval_48097 chr13 95991744 95993191 + 0 NA intron (ENSMUSG00000051111.16, intron 3 of 10) protein_coding-intron (ENSMUSG00000051111.16, intron 4 of 12) -2241 ENSMUSG00000051111.16 ENSMUSG00000051111 ENSMUST00000220740 Sv2c protein_coding Interval_142026 chr6 136599770 136600256 + 0 NA intron (ENSMUSG00000030213.12, intron 2 of 4) protein_coding-intron (ENSMUSG00000030213.12, intron 12 of 14) -20619 ENSMUSG00000107760.1 ENSMUSG00000107760 ENSMUST00000204462 Gm44401 TEC Interval_51333 chr14 26497498 26497874 + 0 NA promoter-TSS (ENSMUSG00000065864.1) snoRNA-promoter-TSS (ENSMUSG00000065864.1) 31 ENSMUSG00000065864.1 ENSMUSG00000065864 ENSMUST00000083930 Gm24031 snoRNA Interval_25406 chr11 47641777 47642072 + 0 NA intron (ENSMUSG00000020354.15, intron 1 of 2) protein_coding-intron (ENSMUSG00000020354.15, intron 1 of 2) -4455 ENSMUSG00000020354.15 ENSMUSG00000020354 ENSMUST00000128558 Sgcd protein_coding Interval_50093 chr14 7941361 7942090 + 0 NA intron (ENSMUSG00000025278.9, intron 42 of 45) protein_coding-intron (ENSMUSG00000025278.9, intron 42 of 45) -15563 ENSMUSG00000109649.1 ENSMUSG00000109649 ENSMUST00000211339 Gm45521 protein_coding Interval_141878 chr6 135076183 135076880 + 0 NA intron (ENSMUSG00000046733.7, intron 1 of 3) protein_coding-intron (ENSMUSG00000046733.7, intron 1 of 3) 10880 ENSMUSG00000046733.7 ENSMUSG00000046733 ENSMUST00000050104 Gprc5a protein_coding Interval_71700 chr17 25518025 25518709 + 0 NA promoter-TSS (ENSMUSG00000117437.1) lincRNA-promoter-TSS (ENSMUSG00000117437.1) -218 ENSMUSG00000117437.1 ENSMUSG00000117437 ENSMUST00000234604 Gm33727 lincRNA Interval_48123 chr13 96421844 96422145 + 0 NA intron (ENSMUSG00000047117.13, intron 11 of 13) protein_coding-intron (ENSMUSG00000047117.13, intron 12 of 14) 17491 ENSMUSG00000021671.9 ENSMUSG00000021671 ENSMUST00000222792 Poc5 protein_coding Interval_156303 chr8 47232052 47233059 + 0 NA intron (ENSMUSG00000038143.16, intron 2 of 5) protein_coding-intron (ENSMUSG00000038143.16, intron 1 of 3) -5389 ENSMUSG00000109606.1 ENSMUSG00000109606 ENSMUST00000211539 Gm45537 TEC Interval_128093 chr5 110825552 110826565 + 0 NA Intergenic Intergenic 13517 ENSMUSG00000043510.12 ENSMUSG00000043510 ENSMUST00000122921 Hscb protein_coding Interval_81253 chr18 56759221 56761227 + 0 NA Intergenic Intergenic -9493 ENSMUSG00000087597.1 ENSMUSG00000087597 ENSMUST00000128240 Gm15345 antisense Interval_35283 chr12 19703474 19704977 + 0 NA promoter-TSS (ENSMUSG00000114164.1) processed_pseudogene-promoter-TSS (ENSMUSG00000114164.1) -69 ENSMUSG00000114164.1 ENSMUSG00000114164 ENSMUST00000222935 Gm48636 processed_pseudogene Interval_5885 chr1 92949395 92949897 + 0 NA intron (ENSMUSG00000100632.1, intron 1 of 1) antisense-intron (ENSMUSG00000100632.1, intron 1 of 1) 944 ENSMUSG00000100632.1 ENSMUSG00000100632 ENSMUST00000191563 9430060I03Rik antisense Interval_24673 chr11 35806194 35806790 + 0 NA Intergenic Intergenic -7608 ENSMUSG00000051062.6 ENSMUSG00000051062 ENSMUST00000160726 Fbll1 protein_coding Interval_37189 chr12 59288893 59289183 + 0 NA Intergenic Intergenic -2926 ENSMUSG00000098229.1 ENSMUSG00000098229 ENSMUST00000182374 Gm7719 processed_pseudogene Interval_77213 chr17 87395659 87396459 + 0 NA intron (ENSMUSG00000036557.8, intron 3 of 4) protein_coding-intron (ENSMUSG00000036557.8, intron 5 of 6) 31576 ENSMUSG00000036557.8 ENSMUSG00000036557 ENSMUST00000189487 Stpg4 protein_coding Interval_15807 chr10 57255062 57255378 + 0 NA Intergenic Intergenic 11534 ENSMUSG00000112217.1 ENSMUSG00000112217 ENSMUST00000219312 Gm48055 processed_pseudogene Interval_36136 chr12 36215055 36215302 + 0 NA intron (ENSMUSG00000020545.14, intron 5 of 7) protein_coding-intron (ENSMUSG00000020545.14, intron 1 of 4) 3040 ENSMUSG00000020545.14 ENSMUSG00000020545 ENSMUST00000222145 Lrrc72 protein_coding Interval_15034 chr10 42106535 42109131 + 0 NA Intergenic Intergenic -52527 ENSMUSG00000085666.3 ENSMUSG00000085666 ENSMUST00000121229 Tdg-ps2 processed_pseudogene Interval_41040 chr12 110761779 110762029 + 0 NA intron (ENSMUSG00000037957.14, intron 1 of 4) protein_coding-intron (ENSMUSG00000037957.14, intron 1 of 2) 23695 ENSMUSG00000037957.14 ENSMUSG00000037957 ENSMUST00000194118 Wdr20 protein_coding Interval_64785 chr16 15723658 15724066 + 0 NA intron (ENSMUSG00000022672.8, intron 39 of 85) protein_coding-intron (ENSMUSG00000022672.8, intron 39 of 85) -27061 ENSMUSG00000116118.1 ENSMUSG00000116118 ENSMUST00000229449 Gm49511 processed_pseudogene Interval_112140 chr4 34910735 34912671 + 0 NA promoter-TSS (ENSMUSG00000085824.7) processed_transcript-promoter-TSS (ENSMUSG00000085824.7) -222 ENSMUSG00000085824.7 ENSMUSG00000085824 ENSMUST00000125820 Platr9 processed_transcript Interval_84635 chr19 14553171 14553474 + 0 NA intron (ENSMUSG00000024642.17, intron 3 of 3) protein_coding-intron (ENSMUSG00000024642.17, intron 5 of 19) 42217 ENSMUSG00000024642.17 ENSMUSG00000024642 ENSMUST00000235975 Tle4 protein_coding Interval_124315 chr5 43868348 43869851 + 0 NA exon (ENSMUSG00000029084.5, exon 1 of 8) protein_coding-exon (ENSMUSG00000029084.5, exon 1 of 8) 239 ENSMUSG00000029084.5 ENSMUSG00000029084 ENSMUST00000196600 Cd38 protein_coding Interval_104317 chr3 63310532 63310857 + 0 NA intron (ENSMUSG00000027820.12, intron 3 of 5) protein_coding-intron (ENSMUSG00000027820.12, intron 3 of 22) 15428 ENSMUSG00000027820.12 ENSMUSG00000027820 ENSMUST00000193805 Mme protein_coding Interval_147783 chr7 73537512 73538321 + 0 NA promoter-TSS (ENSMUSG00000078671.11) protein_coding-promoter-TSS (ENSMUSG00000078671.11) -97 ENSMUSG00000108563.1 ENSMUSG00000108563 ENSMUST00000206776 Gm44686 antisense Interval_41138 chr12 111432700 111433221 + 0 NA Intergenic Intergenic -2014 ENSMUSG00000097081.1 ENSMUSG00000097081 ENSMUST00000181085 Gm10425 antisense Interval_103644 chr3 51375237 51376086 + 0 NA Intergenic Intergenic -2415 ENSMUSG00000102544.1 ENSMUSG00000102544 ENSMUST00000195545 Gm5103 lincRNA Interval_94423 chr2 91115003 91115739 + 0 NA exon (ENSMUSG00000002111.8, exon 5 of 5) protein_coding-exon (ENSMUSG00000002111.8, exon 5 of 5) -2773 ENSMUSG00000002100.15 ENSMUSG00000002100 ENSMUST00000169776 Mybpc3 protein_coding Interval_128965 chr5 116347289 116347747 + 0 NA Intergenic Intergenic 34117 ENSMUSG00000106766.1 ENSMUSG00000106766 ENSMUST00000200749 4933424N20Rik TEC Interval_83254 chr18 83032721 83033455 + 0 NA intron (ENSMUSG00000118094.1, intron 2 of 6) processed_transcript-intron (ENSMUSG00000118094.1, intron 2 of 6) -11933 ENSMUSG00000117976.1 ENSMUSG00000117976 ENSMUST00000238101 Gm50437 lincRNA Interval_26624 chr11 59289116 59291453 + 0 NA intron (ENSMUSG00000009900.7, intron 1 of 3) protein_coding-intron (ENSMUSG00000009900.7, intron 1 of 3) 468 ENSMUSG00000009900.7 ENSMUSG00000009900 ENSMUST00000010044 Wnt3a protein_coding Interval_141921 chr6 135377460 135378188 + 0 NA intron (ENSMUSG00000030208.15, intron 3 of 5) protein_coding-intron (ENSMUSG00000030208.15, intron 2 of 4) 15279 ENSMUSG00000030208.15 ENSMUSG00000030208 ENSMUST00000111907 Emp1 protein_coding Interval_132110 chr5 142808907 142809278 + 0 NA intron (ENSMUSG00000039477.16, intron 2 of 2) protein_coding-intron (ENSMUSG00000039477.16, intron 2 of 15) -43070 ENSMUSG00000039477.16 ENSMUSG00000039477 ENSMUST00000198181 Tnrc18 protein_coding Interval_137717 chr6 81446157 81447130 + 0 NA Intergenic Intergenic -25385 ENSMUSG00000107691.1 ENSMUSG00000107691 ENSMUST00000203247 Gm43901 processed_pseudogene Interval_35478 chr12 22956444 22957373 + 0 NA intron (ENSMUSG00000113670.1, intron 2 of 2) lincRNA-intron (ENSMUSG00000073164.11, intron 3 of 3) 3398 ENSMUSG00000113670.1 ENSMUSG00000113670 ENSMUST00000222206 Gm49686 transcribed_unprocessed_pseudogene Interval_533 chr1 7047076 7048043 + 0 NA Intergenic Intergenic 11644 ENSMUSG00000103629.1 ENSMUSG00000103629 ENSMUST00000195648 Gm5694 processed_pseudogene Interval_818 chr1 11748090 11748957 + 0 NA intron (ENSMUSG00000057715.13, intron 8 of 12) protein_coding-intron (ENSMUSG00000057715.13, intron 8 of 13) 44316 ENSMUSG00000103561.1 ENSMUSG00000103561 ENSMUST00000195360 Gm38069 TEC Interval_149951 chr7 103488434 103489149 + 0 NA Intergenic Intergenic 9248 ENSMUSG00000046396.7 ENSMUSG00000046396 ENSMUST00000055787 Olfr609 protein_coding Interval_40326 chr12 103691521 103691756 + 0 NA intron (ENSMUSG00000021081.12, intron 3 of 4) protein_coding-intron (ENSMUSG00000021081.12, intron 4 of 5) 3078 ENSMUSG00000021081.12 ENSMUSG00000021081 ENSMUST00000118101 Serpina1f protein_coding Interval_127741 chr5 107252786 107253031 + 0 NA intron (ENSMUSG00000029287.14, intron 2 of 6) protein_coding-intron (ENSMUSG00000029287.14, intron 2 of 16) 3596 ENSMUSG00000106671.1 ENSMUSG00000106671 ENSMUST00000197184 Gm42900 TEC Interval_89435 chr2 20667769 20669990 + 0 NA intron (ENSMUSG00000036617.17, intron 5 of 5) protein_coding-intron (ENSMUSG00000036617.17, intron 4 of 18) 44355 ENSMUSG00000086418.1 ENSMUSG00000086418 ENSMUST00000137186 Gm13362 antisense Interval_113347 chr4 53667979 53668625 + 0 NA intron (ENSMUSG00000054752.16, intron 6 of 12) protein_coding-intron (ENSMUSG00000054752.16, intron 6 of 12) 6006 ENSMUSG00000081516.1 ENSMUSG00000081516 ENSMUST00000117239 Gm12470 processed_pseudogene Interval_29409 chr11 83802085 83802277 + 0 NA Intergenic Intergenic 1717 ENSMUSG00000081342.1 ENSMUSG00000081342 ENSMUST00000122379 Gm11434 processed_pseudogene Interval_36842 chr12 54575260 54576429 + 0 NA Intergenic Intergenic -46746 ENSMUSG00000112145.1 ENSMUSG00000112145 ENSMUST00000219812 Gm6218 processed_pseudogene Interval_50859 chr14 20257059 20259021 + 0 NA intron (ENSMUSG00000114410.1, intron 2 of 4) unprocessed_pseudogene-intron (ENSMUSG00000114410.1, intron 2 of 4) 2892 ENSMUSG00000114410.1 ENSMUSG00000114410 ENSMUST00000224421 Gm2048 unprocessed_pseudogene Interval_120217 chr4 144355809 144356271 + 0 NA Intergenic Intergenic -1902 ENSMUSG00000070619.5 ENSMUSG00000070619 ENSMUST00000094526 Gm13119 protein_coding Interval_146699 chr7 49518295 49518512 + 0 NA intron (ENSMUSG00000052512.17, intron 11 of 38) protein_coding-intron (ENSMUSG00000052512.17, intron 11 of 37) 48691 ENSMUSG00000102148.1 ENSMUSG00000102148 ENSMUST00000193746 Gm38059 TEC Interval_51913 chr14 33866234 33866447 + 0 NA Intergenic Intergenic -55057 ENSMUSG00000115751.1 ENSMUSG00000115751 ENSMUST00000226156 4930503F20Rik lincRNA Interval_22112 chr11 6410247 6410926 + 0 NA Intergenic Intergenic -5726 ENSMUSG00000071866.12 ENSMUSG00000071866 ENSMUST00000213200 Ppia protein_coding Interval_104804 chr3 73958824 73959125 + 0 NA Intergenic Intergenic 25928 ENSMUSG00000102859.1 ENSMUSG00000102859 ENSMUST00000194185 Gm8625 processed_pseudogene Interval_94326 chr2 88923489 88923763 + 0 NA Intergenic Intergenic -8535 ENSMUSG00000075113.2 ENSMUSG00000075113 ENSMUST00000099809 Olfr1209 protein_coding Interval_163858 chr9 27191573 27192701 + 0 NA Intergenic Intergenic 11161 ENSMUSG00000110836.1 ENSMUSG00000110836 ENSMUST00000216094 Gm48801 lincRNA Interval_85203 chr19 23708510 23708892 + 0 NA intron (ENSMUSG00000074925.4, intron 4 of 6) protein_coding-intron (ENSMUSG00000074925.4, intron 4 of 5) 21272 ENSMUSG00000074925.4 ENSMUSG00000074925 ENSMUST00000067077 Ptar1 protein_coding Interval_62366 chr15 91165017 91165358 + 0 NA intron (ENSMUSG00000055782.9, intron 6 of 9) protein_coding-intron (ENSMUSG00000055782.9, intron 6 of 9) 25511 ENSMUSG00000055782.9 ENSMUSG00000055782 ENSMUST00000230461 Abcd2 protein_coding Interval_161903 chr8 123653146 123654544 + 0 NA promoter-TSS (ENSMUSG00000039960.5) protein_coding-promoter-TSS (ENSMUSG00000039960.5) -84 ENSMUSG00000039960.5 ENSMUSG00000039960 ENSMUST00000045487 Rhou protein_coding Interval_93227 chr2 71316503 71316751 + 0 NA intron (ENSMUSG00000027010.16, intron 4 of 16) protein_coding-intron (ENSMUSG00000027010.16, intron 2 of 3) -3156 ENSMUSG00000082190.1 ENSMUSG00000082190 ENSMUST00000117993 Gm13641 processed_pseudogene Interval_114221 chr4 68812915 68814847 + 0 NA intron (ENSMUSG00000028351.5, intron 3 of 3) protein_coding-intron (ENSMUSG00000028351.5, intron 5 of 7) 27526 ENSMUSG00000028351.5 ENSMUSG00000028351 ENSMUST00000140572 Brinp1 protein_coding Interval_168671 chr9 85701447 85702472 + 0 NA intron (ENSMUSG00000035941.15, intron 24 of 27) protein_coding-intron (ENSMUSG00000035941.15, intron 25 of 28) 16579 ENSMUSG00000035941.15 ENSMUSG00000035941 ENSMUST00000186447 Ibtk protein_coding Interval_72312 chr17 29113562 29114371 + 0 NA promoter-TSS (ENSMUSG00000064147.7) protein_coding-promoter-TSS (ENSMUSG00000064147.7) -19505 ENSMUSG00000117050.1 ENSMUSG00000117050 ENSMUST00000233069 1700023B13Rik TEC Interval_164987 chr9 43678866 43679964 + 0 NA Intergenic Intergenic -3638 ENSMUSG00000110808.1 ENSMUSG00000110808 ENSMUST00000216789 Gm5364 processed_pseudogene Interval_143921 chr7 17677001 17677565 + 0 NA intron (ENSMUSG00000108558.1, intron 2 of 4) transcribed_unprocessed_pseudogene-intron (ENSMUSG00000108558.1, intron 2 of 4) 4991 ENSMUSG00000108558.1 ENSMUSG00000108558 ENSMUST00000206181 Psg-ps1 transcribed_unprocessed_pseudogene Interval_140123 chr6 114461675 114462126 + 0 NA intron (ENSMUSG00000053004.9, intron 1 of 1) protein_coding-intron (ENSMUSG00000053004.9, intron 2 of 2) 58234 ENSMUSG00000053004.9 ENSMUSG00000053004 ENSMUST00000160780 Hrh1 protein_coding Interval_147515 chr7 67950623 67953436 + 0 NA promoter-TSS (ENSMUSG00000005533.10) protein_coding-promoter-TSS (ENSMUSG00000005533.10) -65444 ENSMUSG00000109152.1 ENSMUSG00000109152 ENSMUST00000208544 Gm44666 processed_pseudogene Interval_84090 chr19 7157089 7158012 + 0 NA intron (ENSMUSG00000036278.7, intron 3 of 10) protein_coding-intron (ENSMUSG00000036278.7, intron 3 of 10) 48225 ENSMUSG00000024767.11 ENSMUSG00000024767 ENSMUST00000123743 Otub1 protein_coding Interval_56781 chr14 122060694 122061125 + 0 NA Intergenic Intergenic 26235 ENSMUSG00000071229.3 ENSMUSG00000071229 ENSMUST00000045976 Timm8a2 protein_coding Interval_116955 chr4 118427588 118428773 + 0 NA promoter-TSS (ENSMUSG00000006390.15) protein_coding-promoter-TSS (ENSMUSG00000006390.15) 61 ENSMUSG00000006390.15 ENSMUSG00000006390 ENSMUST00000067896 Elovl1 protein_coding Interval_69901 chr17 3074189 3075494 + 0 NA Intergenic Intergenic 9199 ENSMUSG00000023795.16 ENSMUSG00000023795 ENSMUST00000127960 Pisd-ps2 transcribed_unprocessed_pseudogene Interval_75820 chr17 71646624 71647019 + 0 NA intron (ENSMUSG00000041057.10, intron 4 of 7) protein_coding-intron (ENSMUSG00000041057.10, intron 11 of 17) 4125 ENSMUSG00000041057.10 ENSMUSG00000041057 ENSMUST00000234339 Wdr43 protein_coding Interval_140045 chr6 113623566 113625259 + 0 NA promoter-TSS (ENSMUSG00000033933.13) protein_coding-promoter-TSS (ENSMUSG00000033933.13) -5095 ENSMUSG00000033933.13 ENSMUSG00000033933 ENSMUST00000204915 Vhl protein_coding Interval_97377 chr2 135596110 135596645 + 0 NA Intergenic Intergenic -12793 ENSMUSG00000085631.1 ENSMUSG00000085631 ENSMUST00000129868 9630028H03Rik antisense Interval_139463 chr6 100341560 100342580 + 0 NA Intergenic Intergenic -55322 ENSMUSG00000072872.3 ENSMUSG00000072872 ENSMUST00000205164 Rybp protein_coding Interval_101751 chr3 9370310 9370519 + 0 NA Intergenic Intergenic -31761 ENSMUSG00000088229.1 ENSMUSG00000088229 ENSMUST00000157604 Gm22604 misc_RNA Interval_4457 chr1 74307269 74310344 + 0 NA exon (ENSMUSG00000103403.1, exon 1 of 1) TEC-exon (ENSMUSG00000103403.1, exon 1 of 1) 958 ENSMUSG00000103403.1 ENSMUSG00000103403 ENSMUST00000194686 Gm37931 TEC Interval_40057 chr12 100912986 100913273 + 0 NA exon (ENSMUSG00000021182.16, exon 30 of 30) protein_coding-exon (ENSMUSG00000021182.16, exon 30 of 30) -13724 ENSMUSG00000047415.12 ENSMUSG00000047415 ENSMUST00000222453 Gpr68 protein_coding Interval_59713 chr15 58813368 58813853 + 0 NA intron (ENSMUSG00000062373.8, intron 1 of 6) protein_coding-intron (ENSMUSG00000062373.8, intron 1 of 6) 5868 ENSMUSG00000065049.1 ENSMUSG00000065049 ENSMUST00000083115 Gm24041 snRNA Interval_84780 chr19 16598708 16599731 + 0 NA intron (ENSMUSG00000024697.4, intron 3 of 6) protein_coding-intron (ENSMUSG00000024697.4, intron 3 of 6) -26751 ENSMUSG00000118023.1 ENSMUSG00000118023 ENSMUST00000237942 Gm50363 processed_pseudogene Interval_19851 chr10 110445937 110446361 + 0 NA intron (ENSMUSG00000020181.18, intron 1 of 40) protein_coding-intron (ENSMUSG00000020181.18, intron 1 of 4) 10055 ENSMUSG00000020181.18 ENSMUSG00000020181 ENSMUST00000160159 Nav3 protein_coding Interval_150558 chr7 112426328 112428449 + 0 NA promoter-TSS (ENSMUSG00000030770.15) protein_coding-promoter-TSS (ENSMUSG00000030770.15) -517 ENSMUSG00000030770.15 ENSMUSG00000030770 ENSMUST00000126047 Parva protein_coding Interval_52528 chr14 47328830 47329513 + 0 NA Intergenic Intergenic -8115 ENSMUSG00000115728.1 ENSMUSG00000115728 ENSMUST00000227470 Gm49190 processed_pseudogene Interval_20948 chr10 122654858 122655056 + 0 NA Intergenic Intergenic 6618 ENSMUSG00000098522.1 ENSMUSG00000098522 ENSMUST00000184477 Mir6412 miRNA Interval_54012 chr14 64453915 64454648 + 0 NA intron (ENSMUSG00000054733.9, intron 2 of 10) protein_coding-intron (ENSMUSG00000054733.9, intron 2 of 10) -37333 ENSMUSG00000054733.9 ENSMUSG00000054733 ENSMUST00000209513 Msra protein_coding Interval_137533 chr6 72929637 72930468 + 0 NA Intergenic Intergenic -23184 ENSMUSG00000097569.2 ENSMUSG00000097569 ENSMUST00000180809 Gm26640 lincRNA Interval_48153 chr13 96706645 96707082 + 0 NA Intergenic Intergenic -28740 ENSMUSG00000113351.1 ENSMUSG00000113351 ENSMUST00000221591 Gm48575 processed_pseudogene Interval_156646 chr8 56397950 56398252 + 0 NA Intergenic Intergenic -55414 ENSMUSG00000110309.1 ENSMUSG00000110309 ENSMUST00000209962 Gm7419 processed_pseudogene Interval_149620 chr7 100102476 100102773 + 0 NA intron (ENSMUSG00000030726.16, intron 4 of 5) protein_coding-intron (ENSMUSG00000030726.16, intron 5 of 11) -1164 ENSMUSG00000030726.16 ENSMUSG00000030726 ENSMUST00000156202 Pold3 protein_coding Interval_9408 chr1 156870423 156870645 + 0 NA intron (ENSMUSG00000026594.14, intron 8 of 19) protein_coding-intron (ENSMUSG00000026594.14, intron 7 of 18) 5586 ENSMUSG00000102960.1 ENSMUSG00000102960 ENSMUST00000194053 Gm37943 TEC Interval_91030 chr2 34551780 34552467 + 0 NA intron (ENSMUSG00000038696.14, intron 7 of 10) protein_coding-intron (ENSMUSG00000038696.14, intron 6 of 10) -12876 ENSMUSG00000081992.1 ENSMUSG00000081992 ENSMUST00000119822 Gm13408 processed_pseudogene Interval_68808 chr16 87148710 87150247 + 0 NA Intergenic Intergenic -21039 ENSMUSG00000116979.1 ENSMUSG00000116979 ENSMUST00000232056 Gm32865 lincRNA Interval_155382 chr8 33046560 33046831 + 0 NA intron (ENSMUSG00000110214.1, intron 3 of 3) lincRNA-intron (ENSMUSG00000110214.1, intron 3 of 3) 9396 ENSMUSG00000110214.1 ENSMUSG00000110214 ENSMUST00000211548 Gm45587 lincRNA Interval_21862 chr11 4817353 4817555 + 0 NA intron (ENSMUSG00000009073.16, intron 2 of 8) protein_coding-intron (ENSMUSG00000009073.16, intron 3 of 16) 31671 ENSMUSG00000009073.16 ENSMUSG00000009073 ENSMUST00000172305 Nf2 protein_coding Interval_96733 chr2 127540980 127541529 + 0 NA exon (ENSMUSG00000027376.15, exon 1 of 24) protein_coding-exon (ENSMUSG00000027376.15, exon 1 of 24) 160 ENSMUSG00000027376.15 ENSMUSG00000027376 ENSMUST00000155581 Prom2 protein_coding Interval_157330 chr8 69399160 69400118 + 0 NA promoter-TSS (ENSMUSG00000088329.1) ribozyme-promoter-TSS (ENSMUSG00000088329.1) -86 ENSMUSG00000088329.1 ENSMUSG00000088329 ENSMUST00000157704 Gm25661 ribozyme Interval_49968 chr13 119075774 119077212 + 0 NA Intergenic Intergenic 193111 ENSMUSG00000105411.1 ENSMUSG00000105411 ENSMUST00000199467 Gm44488 miRNA Interval_47088 chr13 75569271 75569978 + 0 NA Intergenic Intergenic -45276 ENSMUSG00000113929.1 ENSMUSG00000113929 ENSMUST00000223378 Gm3926 processed_pseudogene Interval_156116 chr8 44937120 44938724 + 0 NA intron (ENSMUSG00000070047.14, intron 1 of 26) protein_coding-intron (ENSMUSG00000070047.14, intron 1 of 26) -2763 ENSMUSG00000110409.1 ENSMUSG00000110409 ENSMUST00000211534 Gm9908 bidirectional_promoter_lncRNA Interval_6223 chr1 102825225 102825728 + 0 NA Intergenic Intergenic 128072 ENSMUSG00000087908.1 ENSMUSG00000087908 ENSMUST00000157283 Gm22034 snoRNA Interval_110827 chr4 8779438 8780144 + 0 NA intron (ENSMUSG00000041235.12, intron 1 of 4) protein_coding-intron (ENSMUSG00000041235.12, intron 2 of 37) -75440 ENSMUSG00000041235.12 ENSMUSG00000041235 ENSMUST00000222546 Chd7 protein_coding Interval_103924 chr3 55011818 55012116 + 0 NA Intergenic Intergenic 43070 ENSMUSG00000027793.6 ENSMUSG00000027793 ENSMUST00000199352 Ccna1 protein_coding Interval_33999 chr11 119915864 119916696 + 0 NA promoter-TSS (ENSMUSG00000025371.12) protein_coding-promoter-TSS (ENSMUSG00000025371.12) 2265 ENSMUSG00000025371.12 ENSMUSG00000025371 ENSMUST00000137055 Chmp6 protein_coding Interval_37632 chr12 70572868 70573122 + 0 NA Intergenic Intergenic 50397 ENSMUSG00000113302.1 ENSMUSG00000113302 ENSMUST00000221234 Gm32219 lincRNA Interval_15948 chr10 59558162 59559560 + 0 NA intron (ENSMUSG00000009647.13, intron 3 of 3) protein_coding-intron (ENSMUSG00000009647.13, intron 1 of 7) -57203 ENSMUSG00000071280.2 ENSMUSG00000071280 ENSMUST00000238281 Gm10322 antisense Interval_1225 chr1 17433986 17434696 + 0 NA Intergenic Intergenic -4813 ENSMUSG00000102048.1 ENSMUSG00000102048 ENSMUST00000186816 Gm6075 processed_pseudogene Interval_27611 chr11 69039825 69041869 + 0 NA Intergenic Intergenic 6326 ENSMUSG00000020898.18 ENSMUSG00000020898 ENSMUST00000161271 Ctc1 protein_coding Interval_117923 chr4 127076776 127077953 + 0 NA promoter-TSS (ENSMUSG00000042408.13) protein_coding-promoter-TSS (ENSMUSG00000042408.13) -78 ENSMUSG00000042408.13 ENSMUSG00000042408 ENSMUST00000125160 Zmym6 protein_coding Interval_125173 chr5 65076947 65078651 + 0 NA intron (ENSMUSG00000037913.12, intron 4 of 6) protein_coding-intron (ENSMUSG00000037913.12, intron 2 of 5) 14333 ENSMUSG00000037913.12 ENSMUSG00000037913 ENSMUST00000203117 Tmem156 protein_coding Interval_151982 chr7 127944579 127945299 + 0 NA intron (ENSMUSG00000070371.11, intron 4 of 14) protein_coding-intron (ENSMUSG00000070371.11, intron 4 of 14) -9489 ENSMUSG00000070371.11 ENSMUSG00000070371 ENSMUST00000144192 Prss36 protein_coding Interval_129070 chr5 117231027 117231533 + 0 NA intron (ENSMUSG00000061288.13, intron 13 of 20) protein_coding-intron (ENSMUSG00000061288.13, intron 12 of 19) 34725 ENSMUSG00000084587.1 ENSMUSG00000084587 ENSMUST00000122638 n-R5s174 rRNA Interval_77127 chr17 86753106 86754973 + 0 NA exon (ENSMUSG00000024140.10, exon 1 of 16) protein_coding-exon (ENSMUSG00000024140.10, exon 1 of 16) -19231 ENSMUSG00000117538.1 ENSMUSG00000117538 ENSMUST00000234482 Gm50008 TEC Interval_133711 chr6 9247384 9247980 + 0 NA exon (ENSMUSG00000046178.3, exon 2 of 2) protein_coding-exon (ENSMUSG00000046178.3, exon 2 of 2) 100916 ENSMUSG00000107851.1 ENSMUSG00000107851 ENSMUST00000203681 Gm35736 processed_pseudogene Interval_107442 chr3 107740152 107741189 + 0 NA TTS (ENSMUSG00000014599.10) protein_coding-TTS (ENSMUSG00000014599.10) 10071 ENSMUSG00000014599.10 ENSMUSG00000014599 ENSMUST00000153114 Csf1 protein_coding Interval_32185 chr11 105987468 105989714 + 0 NA exon (ENSMUSG00000020681.14, exon 24 of 25) protein_coding-exon (ENSMUSG00000020681.14, exon 24 of 25) -2897 ENSMUSG00000085297.1 ENSMUSG00000085297 ENSMUST00000130673 Gm11651 antisense Interval_47491 chr13 85279094 85279291 + 0 NA intron (ENSMUSG00000021549.14, intron 1 of 24) protein_coding-intron (ENSMUSG00000021549.14, intron 1 of 24) 9938 ENSMUSG00000021549.14 ENSMUSG00000021549 ENSMUST00000132711 Rasa1 protein_coding Interval_45033 chr13 51636993 51637692 + 0 NA Intergenic Intergenic -7890 ENSMUSG00000062248.5 ENSMUSG00000062248 ENSMUST00000075853 Cks2 protein_coding Interval_100767 chr2 172433925 172434411 + 0 NA TTS (ENSMUSG00000074570.14) protein_coding-TTS (ENSMUSG00000074570.14) 6392 ENSMUSG00000087633.1 ENSMUSG00000087633 ENSMUST00000138288 Gm14455 antisense Interval_14969 chr10 41544159 41545937 + 0 NA intron (ENSMUSG00000075225.15, intron 18 of 20) protein_coding-intron (ENSMUSG00000075225.15, intron 9 of 10) -8714 ENSMUSG00000090708.1 ENSMUSG00000090708 ENSMUST00000164074 Gm17196 antisense Interval_66266 chr16 32731708 32732186 + 0 NA Intergenic Intergenic 5281 ENSMUSG00000098225.1 ENSMUSG00000098225 ENSMUST00000182938 Gm9556 processed_pseudogene Interval_167567 chr9 70502717 70504286 + 0 NA promoter-TSS (ENSMUSG00000032217.13) protein_coding-promoter-TSS (ENSMUSG00000032217.13) -13699 ENSMUSG00000088284.1 ENSMUSG00000088284 ENSMUST00000157659 Gm23588 snRNA Interval_70247 chr17 7226530 7227306 + 0 NA promoter-TSS (ENSMUSG00000023809.10) protein_coding-promoter-TSS (ENSMUSG00000023809.10) 56791 ENSMUSG00000023809.10 ENSMUSG00000023809 ENSMUST00000231530 Rps6ka2 protein_coding Interval_44335 chr13 43788938 43789733 + 0 NA intron (ENSMUSG00000015396.4, intron 1 of 3) protein_coding-intron (ENSMUSG00000015396.4, intron 2 of 4) 4150 ENSMUSG00000015396.4 ENSMUSG00000015396 ENSMUST00000221359 Cd83 protein_coding Interval_70165 chr17 5902895 5903090 + 0 NA intron (ENSMUSG00000002365.10, intron 6 of 17) protein_coding-intron (ENSMUSG00000002365.10, intron 6 of 17) -36095 ENSMUSG00000116734.1 ENSMUSG00000116734 ENSMUST00000231634 Gm8376 processed_pseudogene Interval_162442 chr8 128768365 128768719 + 0 NA intron (ENSMUSG00000025808.17, intron 6 of 10) protein_coding-intron (ENSMUSG00000102141.1, intron 4 of 6) -2628 ENSMUSG00000087870.1 ENSMUSG00000087870 ENSMUST00000157245 Gm26100 snoRNA Interval_166063 chr9 56172333 56172691 + 0 NA Intergenic Intergenic -7035 ENSMUSG00000032324.11 ENSMUSG00000032324 ENSMUST00000216320 Tspan3 protein_coding Interval_150072 chr7 105617800 105619643 + 0 NA promoter-TSS (ENSMUSG00000036989.16) protein_coding-promoter-TSS (ENSMUSG00000036989.16) 5983 ENSMUSG00000110077.1 ENSMUSG00000110077 ENSMUST00000211532 Gm45632 TEC Interval_35554 chr12 24755358 24756076 + 0 NA Intergenic Intergenic -4508 ENSMUSG00000113062.1 ENSMUSG00000113062 ENSMUST00000221016 Gm48895 processed_pseudogene Interval_47306 chr13 80962831 80963906 + 0 NA promoter-TSS (ENSMUSG00000097098.8) antisense-promoter-TSS (ENSMUSG00000097098.8) 362 ENSMUSG00000097146.1 ENSMUSG00000097146 ENSMUST00000181103 Gm4211 lincRNA Interval_138839 chr6 92454050 92454777 + 0 NA intron (ENSMUSG00000030020.13, intron 2 of 7) protein_coding-intron (ENSMUSG00000030020.13, intron 3 of 8) -107364 ENSMUSG00000098130.1 ENSMUSG00000098130 ENSMUST00000182175 Gm17797 processed_pseudogene Interval_106185 chr3 94442871 94443842 + 0 NA promoter-TSS (ENSMUSG00000028140.13) protein_coding-promoter-TSS (ENSMUSG00000028140.13) 38 ENSMUSG00000028140.13 ENSMUSG00000028140 ENSMUST00000196143 Mrpl9 protein_coding Interval_76990 chr17 85409558 85410865 + 0 NA intron (ENSMUSG00000071037.6, intron 7 of 10) protein_coding-intron (ENSMUSG00000071037.6, intron 7 of 10) -88422 ENSMUSG00000097803.1 ENSMUSG00000097803 ENSMUST00000181130 Rpl31-ps16 processed_pseudogene Interval_20548 chr10 118837195 118837875 + 0 NA Intergenic Intergenic -2429 ENSMUSG00000112616.1 ENSMUSG00000112616 ENSMUST00000218937 Gm47434 TEC Interval_19577 chr10 103684412 103685874 + 0 NA Intergenic Intergenic -102750 ENSMUSG00000098173.1 ENSMUSG00000098173 ENSMUST00000182615 Gm26923 processed_pseudogene Interval_94650 chr2 93029005 93029753 + 0 NA promoter-TSS (ENSMUSG00000075027.10) antisense-promoter-TSS (ENSMUSG00000075027.10) -1065 ENSMUSG00000075027.10 ENSMUSG00000075027 ENSMUST00000145926 4631405J19Rik antisense Interval_26491 chr11 58137025 58137515 + 0 NA intron (ENSMUSG00000037275.14, intron 19 of 27) protein_coding-intron (ENSMUSG00000037275.14, intron 19 of 27) 11202 ENSMUSG00000087629.1 ENSMUSG00000087629 ENSMUST00000129126 Gm12246 antisense Interval_37292 chr12 64894532 64895619 + 0 NA Intergenic Intergenic -17447 ENSMUSG00000113075.1 ENSMUSG00000113075 ENSMUST00000223350 Rpl7a-ps1 processed_pseudogene Interval_31451 chr11 100758789 100760114 + 0 NA intron (ENSMUSG00000035355.15, intron 1 of 16) protein_coding-intron (ENSMUSG00000035355.15, intron 1 of 16) 491 ENSMUSG00000035355.15 ENSMUSG00000035355 ENSMUST00000107363 Kcnh4 protein_coding Interval_58964 chr15 41066309 41066648 + 0 NA intron (ENSMUSG00000022306.9, intron 5 of 7) protein_coding-intron (ENSMUSG00000022306.9, intron 5 of 7) 68518 ENSMUSG00000115898.1 ENSMUSG00000115898 ENSMUST00000230853 Gm49524 TEC Interval_106654 chr3 98160364 98161201 + 0 NA exon (ENSMUSG00000043468.4, exon 1 of 1) protein_coding-exon (ENSMUSG00000043468.4, exon 1 of 1) 152 ENSMUSG00000043468.4 ENSMUSG00000043468 ENSMUST00000050342 Adam30 protein_coding Interval_78118 chr18 8478052 8478860 + 0 NA Intergenic Intergenic 63327 ENSMUSG00000117484.1 ENSMUSG00000117484 ENSMUST00000234117 Gm5500 processed_pseudogene Interval_131463 chr5 137389079 137389716 + 0 NA intron (ENSMUSG00000079173.11, intron 75 of 86) protein_coding-intron (ENSMUSG00000079173.11, intron 76 of 87) 12341 ENSMUSG00000079173.11 ENSMUSG00000079173 ENSMUST00000130056 Zan protein_coding Interval_163899 chr9 27917949 27918313 + 0 NA intron (ENSMUSG00000062257.13, intron 1 of 7) protein_coding-intron (ENSMUSG00000062257.13, intron 1 of 7) 126984 ENSMUSG00000062257.13 ENSMUSG00000062257 ENSMUST00000126845 Opcml protein_coding Interval_163666 chr9 23600610 23600807 + 0 NA Intergenic Intergenic -175784 ENSMUSG00000111041.1 ENSMUSG00000111041 ENSMUST00000215669 Gm3011 processed_pseudogene Interval_113057 chr4 47262509 47262786 + 0 NA TTS (ENSMUSG00000028339.17) protein_coding-TTS (ENSMUSG00000028339.17) 4112 ENSMUSG00000028339.17 ENSMUSG00000028339 ENSMUST00000107730 Col15a1 protein_coding Interval_26621 chr11 59279204 59279611 + 0 NA intron (ENSMUSG00000009900.7, intron 1 of 3) protein_coding-intron (ENSMUSG00000009900.7, intron 1 of 3) 11345 ENSMUSG00000009900.7 ENSMUSG00000009900 ENSMUST00000010044 Wnt3a protein_coding Interval_51725 chr14 31661533 31663234 + 0 NA intron (ENSMUSG00000021900.10, intron 2 of 3) protein_coding-intron (ENSMUSG00000021900.10, intron 2 of 3) 21355 ENSMUSG00000021900.10 ENSMUSG00000021900 ENSMUST00000090147 Btd protein_coding Interval_510 chr1 6779306 6779554 + 0 NA intron (ENSMUSG00000033740.17, intron 4 of 21) protein_coding-intron (ENSMUSG00000033740.17, intron 6 of 23) 41855 ENSMUSG00000033740.17 ENSMUSG00000033740 ENSMUST00000130338 St18 protein_coding Interval_141992 chr6 136417882 136418079 + 0 NA TTS (ENSMUSG00000088409.1) snRNA-TTS (ENSMUSG00000088409.1) 168 ENSMUSG00000088409.1 ENSMUSG00000088409 ENSMUST00000157784 Gm25882 snRNA Interval_95553 chr2 112215775 112216303 + 0 NA Intergenic Intergenic -25446 ENSMUSG00000027134.4 ENSMUSG00000027134 ENSMUST00000129503 Lpcat4 protein_coding Interval_133789 chr6 12214609 12215233 + 0 NA Intergenic Intergenic 86295 ENSMUSG00000108209.1 ENSMUSG00000108209 ENSMUST00000203296 Gm32222 processed_pseudogene Interval_70077 chr17 5154344 5155071 + 0 NA intron (ENSMUSG00000069729.14, intron 4 of 19) protein_coding-intron (ENSMUSG00000069729.14, intron 4 of 18) -42597 ENSMUSG00000081783.2 ENSMUSG00000081783 ENSMUST00000122283 Gm15599 processed_pseudogene Interval_1145 chr1 16115753 16116717 + 0 NA intron (ENSMUSG00000025921.7, intron 2 of 5) protein_coding-intron (ENSMUSG00000025921.7, intron 2 of 5) -13387 ENSMUSG00000043716.13 ENSMUSG00000043716 ENSMUST00000125005 Rpl7 protein_coding Interval_130673 chr5 129649233 129649549 + 0 NA Intergenic Intergenic 20708 ENSMUSG00000051034.7 ENSMUSG00000051034 ENSMUST00000049778 Zfp11 protein_coding Interval_11287 chr1 180762022 180764187 + 0 NA TTS (ENSMUSG00000103156.1) lincRNA-TTS (ENSMUSG00000103156.1) 5552 ENSMUSG00000103156.1 ENSMUSG00000103156 ENSMUST00000193209 Gm38293 lincRNA Interval_26931 chr11 61656587 61657052 + 0 NA intron (ENSMUSG00000004837.2, intron 1 of 4) protein_coding-intron (ENSMUSG00000004837.2, intron 1 of 4) -12227 ENSMUSG00000004837.2 ENSMUSG00000004837 ENSMUST00000155380 Grap protein_coding Interval_116268 chr4 109165047 109166743 + 0 NA intron (ENSMUSG00000028559.17, intron 2 of 4) protein_coding-intron (ENSMUSG00000028559.17, intron 2 of 23) -4698 ENSMUSG00000088014.1 ENSMUSG00000088014 ENSMUST00000157389 Gm23743 misc_RNA Interval_111019 chr4 11260599 11260805 + 0 NA TTS (ENSMUSG00000045205.16) protein_coding-TTS (ENSMUSG00000045205.16) 18717 ENSMUSG00000089185.1 ENSMUSG00000089185 ENSMUST00000158560 Gm22940 snRNA Interval_137154 chr6 68446005 68446274 + 0 NA Intergenic Intergenic 8699 ENSMUSG00000076523.2 ENSMUSG00000076523 ENSMUST00000103324 Igkv15-103 IG_V_gene Interval_115847 chr4 105215896 105216268 + 0 NA intron (ENSMUSG00000028517.8, intron 4 of 5) protein_coding-intron (ENSMUSG00000028517.8, intron 4 of 5) 58735 ENSMUSG00000028517.8 ENSMUSG00000028517 ENSMUST00000064139 Plpp3 protein_coding Interval_102137 chr3 18456315 18456614 + 0 NA intron (ENSMUSG00000102886.1, intron 1 of 5) lincRNA-intron (ENSMUSG00000102886.1, intron 1 of 5) 4790 ENSMUSG00000102886.1 ENSMUSG00000102886 ENSMUST00000193120 Gm30667 lincRNA Interval_159332 chr8 93661517 93662464 + 0 NA intron (ENSMUSG00000110559.1, intron 3 of 5) lincRNA-intron (ENSMUSG00000110559.1, intron 3 of 5) 25968 ENSMUSG00000110559.1 ENSMUSG00000110559 ENSMUST00000212304 Gm26843 lincRNA Interval_59129 chr15 44438364 44438608 + 0 NA TTS (ENSMUSG00000022338.8) protein_coding-TTS (ENSMUSG00000022338.8) 5891 ENSMUSG00000094551.1 ENSMUSG00000094551 ENSMUST00000177971 Gm22392 snRNA Interval_102015 chr3 14999295 15001303 + 0 NA intron (ENSMUSG00000098008.1, intron 3 of 3) lincRNA-intron (ENSMUSG00000098008.1, intron 3 of 3) -25747 ENSMUSG00000098186.1 ENSMUSG00000098186 ENSMUST00000182302 Gm7132 processed_pseudogene Interval_42352 chr13 12293859 12294530 + 0 NA intron (ENSMUSG00000052374.16, intron 10 of 21) protein_coding-intron (ENSMUSG00000052374.16, intron 9 of 20) -20098 ENSMUSG00000052374.16 ENSMUSG00000052374 ENSMUST00000110616 Actn2 protein_coding Interval_89877 chr2 26163844 26164165 + 0 NA Intergenic Intergenic -25202 ENSMUSG00000087679.2 ENSMUSG00000087679 ENSMUST00000163836 Tmem250-ps protein_coding Interval_121948 chr5 12030014 12030465 + 0 NA Intergenic Intergenic -59298 ENSMUSG00000099516.1 ENSMUSG00000099516 ENSMUST00000188502 Gm29066 lincRNA Interval_105305 chr3 84730226 84730450 + 0 NA intron (ENSMUSG00000102805.5, intron 3 of 9) protein_coding-intron (ENSMUSG00000102805.5, intron 3 of 9) 64128 ENSMUSG00000056498.13 ENSMUSG00000056498 ENSMUST00000128344 Tmem154 protein_coding Interval_58680 chr15 37011188 37011788 + 0 NA intron (ENSMUSG00000097259.2, intron 1 of 1) antisense-intron (ENSMUSG00000097259.2, intron 1 of 6) 3905 ENSMUSG00000097259.2 ENSMUSG00000097259 ENSMUST00000227544 Gm26766 antisense Interval_69773 chr16 96183000 96183608 + 0 NA intron (ENSMUSG00000045275.16, intron 2 of 2) protein_coding-intron (ENSMUSG00000045275.16, intron 2 of 10) 8967 ENSMUSG00000045275.16 ENSMUSG00000045275 ENSMUST00000233889 Lca5l protein_coding Interval_13489 chr10 18604663 18605335 + 0 NA intron (ENSMUSG00000019852.7, intron 26 of 33) protein_coding-intron (ENSMUSG00000019852.7, intron 26 of 32) -39044 ENSMUSG00000111173.1 ENSMUSG00000111173 ENSMUST00000215943 Gm48297 processed_pseudogene Interval_164968 chr9 43498393 43498768 + 0 NA Intergenic Intergenic 17252 ENSMUSG00000111110.1 ENSMUSG00000111110 ENSMUST00000216439 Gm36855 lincRNA Interval_172330 chrX 13058572 13058765 + 0 NA Intergenic Intergenic 16617 ENSMUSG00000087424.1 ENSMUSG00000087424 ENSMUST00000130099 5730405O15Rik processed_transcript Interval_167471 chr9 69681291 69681527 + 0 NA Intergenic Intergenic 79531 ENSMUSG00000059246.4 ENSMUSG00000059246 ENSMUST00000071281 Foxb1 protein_coding Interval_113880 chr4 59536028 59536841 + 0 NA intron (ENSMUSG00000028382.15, intron 1 of 12) protein_coding-intron (ENSMUSG00000028382.15, intron 1 of 13) 3687 ENSMUSG00000080831.1 ENSMUSG00000080831 ENSMUST00000119529 Gm12529 processed_pseudogene Interval_102559 chr3 27758591 27759271 + 0 NA Intergenic Intergenic -48533 ENSMUSG00000039286.12 ENSMUSG00000039286 ENSMUST00000193779 Fndc3b protein_coding Interval_85958 chr19 34220662 34221162 + 0 NA intron (ENSMUSG00000024776.18, intron 2 of 10) protein_coding-intron (ENSMUSG00000024776.18, intron 2 of 10) 28683 ENSMUSG00000024776.18 ENSMUSG00000024776 ENSMUST00000130756 Stambpl1 protein_coding Interval_103834 chr3 53499727 53499936 + 0 NA intron (ENSMUSG00000027744.4, intron 3 of 6) protein_coding-intron (ENSMUSG00000027744.4, intron 3 of 6) -9097 ENSMUSG00000105481.1 ENSMUSG00000105481 ENSMUST00000198286 6430500D05Rik TEC Interval_4075 chr1 67442001 67442460 + 0 NA Intergenic Intergenic -142823 ENSMUSG00000082473.1 ENSMUSG00000082473 ENSMUST00000119302 Kif22-ps processed_pseudogene Interval_12022 chr1 188910488 188911172 + 0 NA exon (ENSMUSG00000026609.15, exon 62 of 71) protein_coding-exon (ENSMUSG00000026609.15, exon 62 of 71) 97011 ENSMUSG00000026608.13 ENSMUSG00000026608 ENSMUST00000193273 Kctd3 protein_coding Interval_136106 chr6 51036206 51036846 + 0 NA Intergenic Intergenic 69258 ENSMUSG00000108153.1 ENSMUSG00000108153 ENSMUST00000203677 Gm44402 processed_pseudogene Interval_12642 chr10 4099534 4100374 + 0 NA intron (ENSMUSG00000040675.17, intron 24 of 27) protein_coding-intron (ENSMUSG00000040675.17, intron 24 of 27) -4359 ENSMUSG00000065792.1 ENSMUSG00000065792 ENSMUST00000083858 Gm25515 snRNA Interval_13068 chr10 11039402 11039760 + 0 NA intron (ENSMUSG00000019828.13, intron 2 of 9) protein_coding-intron (ENSMUSG00000019828.13, intron 2 of 8) 3665 ENSMUSG00000111921.1 ENSMUSG00000111921 ENSMUST00000218933 Gm48406 processed_pseudogene Interval_84141 chr19 7493633 7495005 + 0 NA promoter-TSS (ENSMUSG00000024759.14) protein_coding-promoter-TSS (ENSMUSG00000024759.14) 124 ENSMUSG00000024759.14 ENSMUSG00000024759 ENSMUST00000236382 Atl3 protein_coding Interval_113146 chr4 48616471 48617625 + 0 NA intron (ENSMUSG00000028347.14, intron 4 of 9) protein_coding-intron (ENSMUSG00000028347.14, intron 4 of 9) -19886 ENSMUSG00000028347.14 ENSMUSG00000028347 ENSMUST00000141720 Tmeff1 protein_coding Interval_160929 chr8 115166089 115166289 + 0 NA intron (ENSMUSG00000004637.15, intron 2 of 2) protein_coding-intron (ENSMUSG00000004637.15, intron 8 of 8) -113276 ENSMUSG00000088428.1 ENSMUSG00000088428 ENSMUST00000157803 Gm22556 rRNA Interval_120664 chr4 149975505 149976062 + 0 NA Intergenic Intergenic 25482 ENSMUSG00000028980.14 ENSMUSG00000028980 ENSMUST00000152907 H6pd protein_coding Interval_122291 chr5 20973192 20975209 + 0 NA Intergenic Intergenic 23211 ENSMUSG00000101013.1 ENSMUSG00000101013 ENSMUST00000190567 A630072M18Rik antisense Interval_27754 chr11 69795141 69795995 + 0 NA TTS (ENSMUSG00000042826.13) protein_coding-TTS (ENSMUSG00000042826.13) -1298 ENSMUSG00000041189.9 ENSMUSG00000041189 ENSMUST00000147791 Chrnb1 protein_coding Interval_99384 chr2 160489550 160489834 + 0 NA Intergenic Intergenic -93665 ENSMUSG00000078955.3 ENSMUSG00000078955 ENSMUST00000128681 Gm14222 sense_intronic Interval_47436 chr13 84242260 84242544 + 0 NA intron (ENSMUSG00000035762.11, intron 1 of 1) protein_coding-intron (ENSMUSG00000035762.11, intron 1 of 11) -8869 ENSMUSG00000035762.11 ENSMUSG00000035762 ENSMUST00000225708 Tmem161b protein_coding Interval_66391 chr16 33560031 33560961 + 0 NA intron (ENSMUSG00000035506.16, intron 4 of 10) protein_coding-intron (ENSMUSG00000035506.16, intron 4 of 12) -55894 ENSMUSG00000035506.16 ENSMUSG00000035506 ENSMUST00000149291 Slc12a8 protein_coding Interval_73727 chr17 43023983 43024745 + 0 NA intron (ENSMUSG00000023915.5, intron 1 of 1) protein_coding-intron (ENSMUSG00000023915.5, intron 1 of 5) 7796 ENSMUSG00000023915.5 ENSMUSG00000023915 ENSMUST00000233482 Tnfrsf21 protein_coding Interval_31130 chr11 98336369 98336669 + 0 NA Intergenic Intergenic -6871 ENSMUSG00000038255.6 ENSMUSG00000038255 ENSMUST00000041685 Neurod2 protein_coding Interval_164696 chr9 40649581 40649828 + 0 NA Intergenic Intergenic 19403 ENSMUSG00000110992.1 ENSMUSG00000110992 ENSMUST00000216204 Gm35371 lincRNA Interval_44126 chr13 41047616 41047888 + 0 NA intron (ENSMUSG00000021363.14, intron 8 of 11) protein_coding-intron (ENSMUSG00000021363.14, intron 7 of 12) -7981 ENSMUSG00000021363.14 ENSMUSG00000021363 ENSMUST00000224423 Mak protein_coding Interval_56275 chr14 115818863 115819452 + 0 NA intron (ENSMUSG00000022112.14, intron 7 of 7) protein_coding-intron (ENSMUSG00000022112.14, intron 7 of 7) 52121 ENSMUSG00000093497.1 ENSMUSG00000093497 ENSMUST00000176344 Gm20713 processed_transcript Interval_128712 chr5 114875765 114876338 + 0 NA intron (ENSMUSG00000029564.12, intron 5 of 6) protein_coding-intron (ENSMUSG00000029564.12, intron 9 of 11) -8026 ENSMUSG00000080707.1 ENSMUSG00000080707 ENSMUST00000119930 Gm13823 processed_pseudogene Interval_168937 chr9 89210475 89212636 + 0 NA intron (ENSMUSG00000066442.17, intron 1 of 3) protein_coding-intron (ENSMUSG00000066442.17, intron 1 of 2) 12176 ENSMUSG00000100838.1 ENSMUSG00000100838 ENSMUST00000138109 Gm29094 protein_coding Interval_70990 chr17 17028374 17029206 + 0 NA Intergenic Intergenic -35323 ENSMUSG00000096696.1 ENSMUSG00000096696 ENSMUST00000127027 Zfp960 protein_coding Interval_75134 chr17 63828585 63829795 + 0 NA Intergenic Intergenic -33872 ENSMUSG00000000127.15 ENSMUSG00000000127 ENSMUST00000038080 Fer protein_coding Interval_142601 chr6 143959847 143961296 + 0 NA intron (ENSMUSG00000041540.16, intron 7 of 13) protein_coding-intron (ENSMUSG00000041540.16, intron 7 of 14) 30296 ENSMUSG00000107796.1 ENSMUSG00000107796 ENSMUST00000204049 Gm44068 TEC Interval_170829 chr9 111022310 111022587 + 0 NA promoter-TSS (ENSMUSG00000032496.7) protein_coding-promoter-TSS (ENSMUSG00000032496.7) -1938 ENSMUSG00000032496.7 ENSMUSG00000032496 ENSMUST00000197575 Ltf protein_coding Interval_89767 chr2 25304743 25305921 + 0 NA promoter-TSS (ENSMUSG00000026959.13) protein_coding-promoter-TSS (ENSMUSG00000026959.13) 13794 ENSMUSG00000026959.13 ENSMUSG00000026959 ENSMUST00000144402 Grin1 protein_coding Interval_168419 chr9 80172186 80172388 + 0 NA intron (ENSMUSG00000033577.18, intron 1 of 35) protein_coding-intron (ENSMUSG00000033577.18, intron 1 of 32) 7060 ENSMUSG00000033577.18 ENSMUSG00000033577 ENSMUST00000138650 Myo6 protein_coding Interval_167502 chr9 70102738 70103623 + 0 NA promoter-TSS (ENSMUSG00000032224.15) protein_coding-promoter-TSS (ENSMUSG00000032224.15) -104 ENSMUSG00000032224.15 ENSMUSG00000032224 ENSMUST00000141775 Fam81a protein_coding Interval_39297 chr12 86516742 86518317 + 0 NA intron (ENSMUSG00000021255.17, intron 5 of 5) protein_coding-intron (ENSMUSG00000021255.17, intron 6 of 6) 47412 ENSMUSG00000021255.17 ENSMUSG00000021255 ENSMUST00000136464 Esrrb protein_coding Interval_36511 chr12 47279739 47280470 + 0 NA Intergenic Intergenic 80113 ENSMUSG00000112215.1 ENSMUSG00000112215 ENSMUST00000218294 Gm2089 processed_pseudogene Interval_96034 chr2 119322121 119323013 + 0 NA intron (ENSMUSG00000074912.10, intron 2 of 2) processed_transcript-intron (ENSMUSG00000074912.10, intron 2 of 2) 3627 ENSMUSG00000074912.10 ENSMUSG00000074912 ENSMUST00000124439 Gm14207 processed_transcript Interval_102336 chr3 22004844 22006230 + 0 NA Intergenic Intergenic -7069 ENSMUSG00000106321.1 ENSMUSG00000106321 ENSMUST00000196313 Gm43674 lincRNA Interval_113573 chr4 56779594 56780557 + 0 NA promoter-TSS (ENSMUSG00000028431.11) protein_coding-promoter-TSS (ENSMUSG00000028431.11) -18034 ENSMUSG00000080370.1 ENSMUSG00000080370 ENSMUST00000116720 Gm22952 snoRNA Interval_168583 chr9 83823208 83823787 + 0 NA Intergenic Intergenic -11269 ENSMUSG00000038379.15 ENSMUSG00000038379 ENSMUST00000191484 Ttk protein_coding Interval_150770 chr7 114261894 114264201 + 0 NA Intergenic Intergenic -8356 ENSMUSG00000030754.9 ENSMUSG00000030754 ENSMUST00000211417 Copb1 protein_coding Interval_121136 chr4 153410481 153411123 + 0 NA intron (ENSMUSG00000039546.9, intron 1 of 4) protein_coding-intron (ENSMUSG00000039546.9, intron 2 of 5) 71377 ENSMUSG00000039546.9 ENSMUSG00000039546 ENSMUST00000149177 Ajap1 protein_coding Interval_65911 chr16 30195638 30196660 + 0 NA intron (ENSMUSG00000101888.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000101888.1, intron 1 of 1) 1078 ENSMUSG00000101888.1 ENSMUSG00000101888 ENSMUST00000187479 1700025H01Rik lincRNA Interval_51378 chr14 27102482 27103884 + 0 NA TTS (ENSMUSG00000040717.6) protein_coding-TTS (ENSMUSG00000040717.6) -11716 ENSMUSG00000021895.10 ENSMUSG00000021895 ENSMUST00000225494 Arhgef3 protein_coding Interval_54456 chr14 69867985 69868776 + 0 NA intron (ENSMUSG00000022085.4, intron 3 of 6) protein_coding-intron (ENSMUSG00000022085.4, intron 3 of 6) 27960 ENSMUSG00000022085.4 ENSMUSG00000022085 ENSMUST00000022678 Pebp4 protein_coding Interval_159783 chr8 103349469 103349815 + 0 NA Intergenic Intergenic -2108 ENSMUSG00000110340.1 ENSMUSG00000110340 ENSMUST00000209501 1600027J07Rik lincRNA Interval_89315 chr2 19270832 19271370 + 0 NA intron (ENSMUSG00000037683.14, intron 10 of 19) protein_coding-intron (ENSMUSG00000037683.14, intron 10 of 18) 71799 ENSMUSG00000037683.14 ENSMUSG00000037683 ENSMUST00000049255 Armc3 protein_coding Interval_117034 chr4 119131304 119132120 + 0 NA promoter-TSS (ENSMUSG00000086683.1) antisense-promoter-TSS (ENSMUSG00000086683.1) -711 ENSMUSG00000086683.1 ENSMUSG00000086683 ENSMUST00000151216 Gm12867 antisense Interval_23371 chr11 21974142 21974350 + 0 NA Intergenic Intergenic 21106 ENSMUSG00000082874.4 ENSMUSG00000082874 ENSMUST00000120694 Rpl15-ps1 processed_pseudogene Interval_101206 chr2 179488386 179489025 + 0 NA intron (ENSMUSG00000000305.12, intron 2 of 2) protein_coding-intron (ENSMUSG00000000305.12, intron 2 of 15) 73769 ENSMUSG00000039138.1 ENSMUSG00000039138 ENSMUST00000041998 4930591A17Rik lincRNA Interval_32931 chr11 113197584 113198347 + 0 NA intron (ENSMUSG00000087259.7, intron 1 of 2) lincRNA-intron (ENSMUSG00000087259.7, intron 1 of 2) 11704 ENSMUSG00000085421.1 ENSMUSG00000085421 ENSMUST00000130373 4732490B19Rik lincRNA Interval_121267 chr4 154524114 154524629 + 0 NA intron (ENSMUSG00000039410.16, intron 2 of 2) protein_coding-intron (ENSMUSG00000039410.16, intron 2 of 16) -25911 ENSMUSG00000086565.1 ENSMUSG00000086565 ENSMUST00000143888 Gm13133 antisense Interval_76354 chr17 79376426 79377353 + 0 NA Intergenic Intergenic 22190 ENSMUSG00000118651.1 ENSMUSG00000118651 ENSMUST00000239444 CT030740.1 antisense Interval_60197 chr15 67407311 67408281 + 0 NA Intergenic Intergenic 181027 ENSMUSG00000102069.1 ENSMUSG00000102069 ENSMUST00000187233 1700012I11Rik lincRNA Interval_96276 chr2 121169948 121171846 + 0 NA promoter-TSS (ENSMUSG00000027263.12) protein_coding-promoter-TSS (ENSMUSG00000027263.12) 228 ENSMUSG00000050619.14 ENSMUSG00000050619 ENSMUST00000146243 Zscan29 protein_coding Interval_106952 chr3 102158650 102160091 + 0 NA intron (ENSMUSG00000027860.15, intron 7 of 7) protein_coding-intron (ENSMUSG00000027860.15, intron 7 of 7) 24755 ENSMUSG00000106296.1 ENSMUSG00000106296 ENSMUST00000197326 4632404M16Rik sense_intronic Interval_24876 chr11 40694413 40695440 + 0 NA promoter-TSS (ENSMUSG00000042032.13) protein_coding-promoter-TSS (ENSMUSG00000042032.13) -9109 ENSMUSG00000042032.13 ENSMUSG00000042032 ENSMUST00000135617 Mat2b protein_coding Interval_124896 chr5 59829603 59829843 + 0 NA Intergenic Intergenic 51811 ENSMUSG00000104889.1 ENSMUSG00000104889 ENSMUST00000196579 Gm43043 processed_pseudogene Interval_58175 chr15 30333278 30334753 + 0 NA intron (ENSMUSG00000022240.10, intron 2 of 2) protein_coding-intron (ENSMUSG00000022240.10, intron 2 of 22) -94829 ENSMUSG00000115073.1 ENSMUSG00000115073 ENSMUST00000226263 Gm49283 TEC Interval_138634 chr6 90604564 90605274 + 0 NA exon (ENSMUSG00000030089.15, exon 1 of 11) protein_coding-exon (ENSMUSG00000030089.15, exon 1 of 11) 194 ENSMUSG00000030089.15 ENSMUSG00000030089 ENSMUST00000032177 Slc41a3 protein_coding Interval_3872 chr1 64060100 64060798 + 0 NA intron (ENSMUSG00000025959.13, intron 2 of 3) protein_coding-intron (ENSMUSG00000025959.13, intron 3 of 3) -17948 ENSMUSG00000098487.1 ENSMUSG00000098487 ENSMUST00000184798 Mir6899 miRNA Interval_56107 chr14 105830894 105831731 + 0 NA Intergenic Intergenic 14404 ENSMUSG00000092664.1 ENSMUSG00000092664 ENSMUST00000174923 Gm22406 miRNA Interval_30326 chr11 93641039 93641364 + 0 NA Intergenic Intergenic -9558 ENSMUSG00000082453.1 ENSMUSG00000082453 ENSMUST00000120917 Gm11502 processed_pseudogene Interval_150606 chr7 112775226 112775737 + 0 NA intron (ENSMUSG00000055320.18, intron 2 of 13) protein_coding-intron (ENSMUSG00000055320.18, intron 2 of 13) 61530 ENSMUSG00000106046.1 ENSMUSG00000106046 ENSMUST00000199696 Gm44462 miRNA Interval_55221 chr14 79425823 79427557 + 0 NA exon (ENSMUSG00000043881.9, exon 1 of 1) protein_coding-exon (ENSMUSG00000043881.9, exon 1 of 1) 179 ENSMUSG00000043881.9 ENSMUSG00000043881 ENSMUST00000061222 Kbtbd7 protein_coding Interval_20628 chr10 119741553 119741772 + 0 NA intron (ENSMUSG00000034813.18, intron 1 of 3) protein_coding-intron (ENSMUSG00000034813.18, intron 1 of 22) 20037 ENSMUSG00000084764.1 ENSMUSG00000084764 ENSMUST00000153898 Grip1os2 antisense Interval_67009 chr16 39858471 39858989 + 0 NA Intergenic Intergenic -75272 ENSMUSG00000098070.1 ENSMUSG00000098070 ENSMUST00000182967 Gm8609 processed_pseudogene Interval_91681 chr2 47368255 47368650 + 0 NA Intergenic Intergenic -173532 ENSMUSG00000092853.1 ENSMUSG00000092853 ENSMUST00000175112 Gm25959 miRNA Interval_141956 chr6 135893946 135894450 + 0 NA intron (ENSMUSG00000030209.14, intron 5 of 5) protein_coding-intron (ENSMUSG00000030209.14, intron 4 of 13) 18693 ENSMUSG00000086614.2 ENSMUSG00000086614 ENSMUST00000155455 Gm14330 antisense Interval_121452 chr4 155894252 155894645 + 0 NA intron (ENSMUSG00000029033.16, intron 1 of 21) protein_coding-intron (ENSMUSG00000029033.16, intron 1 of 22) -2693 ENSMUSG00000051557.15 ENSMUSG00000051557 ENSMUST00000130146 Pusl1 protein_coding Interval_165053 chr9 44157251 44157517 + 0 NA promoter-TSS (ENSMUSG00000034342.9) protein_coding-promoter-TSS (ENSMUSG00000034342.9) 22723 ENSMUSG00000032135.15 ENSMUSG00000032135 ENSMUST00000132490 Mcam protein_coding Interval_154883 chr8 24605092 24605829 + 0 NA intron (ENSMUSG00000031552.13, intron 1 of 1) protein_coding-intron (ENSMUSG00000031552.13, intron 19 of 19) -9794 ENSMUSG00000031551.12 ENSMUSG00000031551 ENSMUST00000033956 Ido1 protein_coding Interval_142300 chr6 140520690 140521281 + 0 NA intron (ENSMUSG00000030231.11, intron 1 of 10) protein_coding-intron (ENSMUSG00000030231.11, intron 3 of 30) -9978 ENSMUSG00000084477.1 ENSMUSG00000084477 ENSMUST00000122528 Gm25780 misc_RNA Interval_23040 chr11 19193539 19193759 + 0 NA Intergenic Intergenic -76215 ENSMUSG00000102585.1 ENSMUSG00000102585 ENSMUST00000193150 Gm37439 TEC Interval_43437 chr13 30947021 30948062 + 0 NA exon (ENSMUSG00000076430.1, exon 1 of 1) protein_coding-exon (ENSMUSG00000076430.1, exon 1 of 1) 218 ENSMUSG00000076430.1 ENSMUSG00000076430 ENSMUST00000102943 Hus1b protein_coding Interval_108832 chr3 132143961 132144837 + 0 NA intron (ENSMUSG00000028031.6, intron 1 of 3) protein_coding-intron (ENSMUSG00000028031.6, intron 1 of 3) 59107 ENSMUSG00000028031.6 ENSMUSG00000028031 ENSMUST00000029665 Dkk2 protein_coding Interval_160684 chr8 111573354 111574826 + 0 NA intron (ENSMUSG00000033545.14, intron 1 of 1) protein_coding-intron (ENSMUSG00000033545.14, intron 1 of 3) 36512 ENSMUSG00000033545.14 ENSMUSG00000033545 ENSMUST00000173819 Znrf1 protein_coding Interval_28357 chr11 75356673 75357263 + 0 NA intron (ENSMUSG00000018809.2, intron 2 of 2) protein_coding-intron (ENSMUSG00000018809.2, intron 2 of 10) 8473 ENSMUSG00000018809.2 ENSMUSG00000018809 ENSMUST00000135774 Smyd4 protein_coding Interval_172477 chrX 20934265 20935527 + 0 NA exon (ENSMUSG00000009406.13, exon 6 of 6) protein_coding-exon (ENSMUSG00000009406.13, exon 6 of 6) -7282 ENSMUSG00000001128.7 ENSMUSG00000001128 ENSMUST00000122862 Cfp protein_coding Interval_16256 chr10 61744882 61745583 + 0 NA intron (ENSMUSG00000020086.6, intron 7 of 8) protein_coding-intron (ENSMUSG00000020086.6, intron 7 of 8) 17084 ENSMUSG00000020085.15 ENSMUSG00000020085 ENSMUST00000140664 Aifm2 protein_coding Interval_41286 chr12 112473697 112474432 + 0 NA Intergenic Intergenic -15410 ENSMUSG00000043122.7 ENSMUSG00000043122 ENSMUST00000223266 A530016L24Rik protein_coding Interval_133368 chr6 4003712 4004554 + 0 NA exon (ENSMUSG00000032766.9, exon 1 of 2) protein_coding-exon (ENSMUSG00000032766.9, exon 1 of 2) 229 ENSMUSG00000032766.9 ENSMUSG00000032766 ENSMUST00000031670 Gng11 protein_coding Interval_106878 chr3 101470759 101471339 + 0 NA Intergenic Intergenic -45396 ENSMUSG00000106137.1 ENSMUSG00000106137 ENSMUST00000196233 Gm42538 antisense Interval_46081 chr13 61222738 61223559 + 0 NA Intergenic Intergenic -19738 ENSMUSG00000021441.4 ENSMUSG00000021441 ENSMUST00000021890 Cts6 protein_coding Interval_36461 chr12 45171715 45172569 + 0 NA Intergenic Intergenic 63135 ENSMUSG00000088852.1 ENSMUSG00000088852 ENSMUST00000158227 Gm24731 snoRNA Interval_62135 chr15 87842100 87842623 + 0 NA Intergenic Intergenic -46418 ENSMUSG00000098938.1 ENSMUSG00000098938 ENSMUST00000183709 Mir6393 miRNA Interval_64861 chr16 16684006 16685301 + 0 NA Intergenic Intergenic -8248 ENSMUSG00000048101.6 ENSMUSG00000048101 ENSMUST00000057886 Olfr19 protein_coding Interval_51580 chr14 30491179 30491426 + 0 NA exon (ENSMUSG00000015968.18, exon 1 of 47) protein_coding-exon (ENSMUSG00000015968.18, exon 1 of 47) -32405 ENSMUSG00000021962.9 ENSMUSG00000021962 ENSMUST00000225934 Dcp1a protein_coding Interval_21174 chr10 127040588 127042537 + 0 NA promoter-TSS (ENSMUSG00000006732.14) protein_coding-promoter-TSS (ENSMUSG00000006732.14) -49 ENSMUSG00000080115.3 ENSMUSG00000080115 ENSMUST00000116231 Eef1akmt3 protein_coding Interval_45496 chr13 55471251 55473400 + 0 NA exon (ENSMUSG00000034686.8, exon 2 of 3) protein_coding-exon (ENSMUSG00000034686.8, exon 2 of 3) 5451 ENSMUSG00000098341.1 ENSMUSG00000098341 ENSMUST00000183653 Mir6944 miRNA Interval_162950 chr9 13686713 13687426 + 0 NA intron (ENSMUSG00000031925.17, intron 1 of 3) protein_coding-intron (ENSMUSG00000031925.17, intron 1 of 3) 24609 ENSMUSG00000031925.17 ENSMUSG00000031925 ENSMUST00000177755 Maml2 protein_coding Interval_76521 chr17 80735500 80736111 + 0 NA Intergenic Intergenic 7674 ENSMUSG00000054957.5 ENSMUSG00000054957 ENSMUST00000068277 Gm9959 pseudogene Interval_83207 chr18 82766356 82768141 + 0 NA Intergenic Intergenic -8207 ENSMUSG00000101773.1 ENSMUSG00000101773 ENSMUST00000188435 2210420H20Rik lincRNA Interval_57603 chr15 12734317 12735615 + 0 NA intron (ENSMUSG00000022197.16, intron 1 of 4) protein_coding-intron (ENSMUSG00000022197.16, intron 1 of 4) 22498 ENSMUSG00000115201.1 ENSMUSG00000115201 ENSMUST00000227559 Gm49276 processed_pseudogene Interval_23884 chr11 27618373 27618929 + 0 NA Intergenic Intergenic -110551 ENSMUSG00000082243.1 ENSMUSG00000082243 ENSMUST00000122413 Gm3810 processed_pseudogene Interval_73841 chr17 44468134 44468756 + 0 NA Intergenic Intergenic -93545 ENSMUSG00000090048.1 ENSMUSG00000090048 ENSMUST00000160203 Runx2os3 antisense Interval_124940 chr5 61212457 61213142 + 0 NA Intergenic Intergenic 125934 ENSMUSG00000106370.2 ENSMUSG00000106370 ENSMUST00000198954 Gm43382 processed_pseudogene Interval_9410 chr1 156891608 156892254 + 0 NA intron (ENSMUSG00000026594.14, intron 4 of 19) protein_coding-intron (ENSMUSG00000026594.14, intron 4 of 18) -15811 ENSMUSG00000102960.1 ENSMUSG00000102960 ENSMUST00000194053 Gm37943 TEC Interval_168316 chr9 78641002 78641630 + 0 NA intron (ENSMUSG00000046186.8, intron 4 of 32) protein_coding-intron (ENSMUSG00000046186.8, intron 4 of 32) -11188 ENSMUSG00000091147.1 ENSMUSG00000091147 ENSMUST00000171278 4921509A06Rik antisense Interval_152782 chr7 137478044 137479052 + 0 NA Intergenic Intergenic 40883 ENSMUSG00000031068.8 ENSMUSG00000031068 ENSMUST00000211598 Glrx3 protein_coding Interval_92883 chr2 68116521 68116779 + 0 NA intron (ENSMUSG00000034780.6, intron 1 of 1) protein_coding-intron (ENSMUSG00000034780.6, intron 1 of 1) 34859 ENSMUSG00000081257.1 ENSMUSG00000081257 ENSMUST00000117875 Gm13607 processed_pseudogene Interval_33370 chr11 116161512 116163173 + 0 NA TTS (ENSMUSG00000020776.18) protein_coding-TTS (ENSMUSG00000020776.18) 1693 ENSMUSG00000104857.1 ENSMUSG00000104857 ENSMUST00000196783 Gm26413 scaRNA Interval_78242 chr18 10627164 10627598 + 0 NA intron (ENSMUSG00000002477.5, intron 3 of 3) protein_coding-intron (ENSMUSG00000002477.5, intron 3 of 3) 9512 ENSMUSG00000002477.5 ENSMUSG00000002477 ENSMUST00000234077 Snrpd1 protein_coding Interval_16839 chr10 69085593 69085793 + 0 NA Intergenic Intergenic 12173 ENSMUSG00000112083.1 ENSMUSG00000112083 ENSMUST00000218524 Gm47107 lincRNA Interval_154456 chr8 18051665 18052256 + 0 NA Intergenic Intergenic 222861 ENSMUSG00000088320.1 ENSMUSG00000088320 ENSMUST00000157695 Gm25665 snoRNA Interval_42261 chr13 11271186 11272013 + 0 NA Intergenic Intergenic 155299 ENSMUSG00000077618.1 ENSMUSG00000077618 ENSMUST00000104430 Gm25496 snoRNA Interval_149266 chr7 96801318 96801732 + 0 NA promoter-TSS (ENSMUSG00000053049.3) antisense-promoter-TSS (ENSMUSG00000053049.3) 24 ENSMUSG00000053049.3 ENSMUSG00000053049 ENSMUST00000155101 Gm15413 antisense Interval_92683 chr2 62591246 62591569 + 0 NA Intergenic Intergenic -17556 ENSMUSG00000000392.17 ENSMUSG00000000392 ENSMUST00000173745 Fap protein_coding Interval_120947 chr4 151875881 151876604 + 0 NA Intergenic Intergenic -14538 ENSMUSG00000014592.21 ENSMUSG00000014592 ENSMUST00000135780 Camta1 protein_coding Interval_174186 chrX 138975446 138975824 + 0 NA exon (ENSMUSG00000052854.15, exon 13 of 28) protein_coding-exon (ENSMUSG00000052854.15, exon 13 of 28) -7083 ENSMUSG00000052854.15 ENSMUSG00000052854 ENSMUST00000155201 Nrk protein_coding Interval_41962 chr13 5662343 5662541 + 0 NA intron (ENSMUSG00000114053.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000114053.1, intron 1 of 2) -91314 ENSMUSG00000114053.1 ENSMUSG00000114053 ENSMUST00000223254 Gm35330 lincRNA Interval_35217 chr12 18381875 18382209 + 0 NA Intergenic Intergenic -5713 ENSMUSG00000113402.1 ENSMUSG00000113402 ENSMUST00000221998 Gm40848 processed_pseudogene Interval_126671 chr5 91969073 91969349 + 0 NA intron (ENSMUSG00000102644.5, intron 4 of 4) transcribed_unitary_pseudogene-intron (ENSMUSG00000102644.5, intron 4 of 4) -6485 ENSMUSG00000029397.15 ENSMUSG00000029397 ENSMUST00000200905 Rchy1 protein_coding Interval_80853 chr18 49488338 49488806 + 0 NA Intergenic Intergenic -34717 ENSMUSG00000100297.1 ENSMUSG00000100297 ENSMUST00000190201 1700044K03Rik lincRNA Interval_82831 chr18 77274117 77274516 + 0 NA Intergenic Intergenic -7642 ENSMUSG00000032818.16 ENSMUSG00000032818 ENSMUST00000123166 Loxhd1 protein_coding Interval_147397 chr7 66448274 66449207 + 0 NA Intergenic Intergenic 6854 ENSMUSG00000109114.1 ENSMUSG00000109114 ENSMUST00000208297 Gm44753 lincRNA Interval_94195 chr2 85007464 85008004 + 0 NA intron (ENSMUSG00000027071.14, intron 7 of 10) protein_coding-intron (ENSMUSG00000027071.14, intron 8 of 11) 19519 ENSMUSG00000027072.13 ENSMUSG00000027072 ENSMUST00000028466 Prg3 protein_coding Interval_125223 chr5 65488907 65489130 + 0 NA TTS (ENSMUSG00000037822.12) protein_coding-TTS (ENSMUSG00000037822.12) 3815 ENSMUSG00000105835.1 ENSMUSG00000105835 ENSMUST00000196121 Gm43552 protein_coding Interval_71970 chr17 27318675 27319968 + 0 NA promoter-TSS (ENSMUSG00000116751.1) lincRNA-promoter-TSS (ENSMUSG00000116751.1) -625 ENSMUSG00000116751.1 ENSMUSG00000116751 ENSMUST00000232564 Gm49793 lincRNA Interval_86063 chr19 36150324 36150554 + 0 NA Intergenic Intergenic -30529 ENSMUSG00000024803.9 ENSMUSG00000024803 ENSMUST00000235221 Ankrd1 protein_coding Interval_25676 chr11 50713288 50714449 + 0 NA intron (ENSMUSG00000036545.9, intron 3 of 20) protein_coding-intron (ENSMUSG00000036545.9, intron 3 of 21) 5047 ENSMUSG00000087080.1 ENSMUSG00000087080 ENSMUST00000137567 Gm12199 antisense Interval_30324 chr11 93615989 93616234 + 0 NA Intergenic Intergenic -34648 ENSMUSG00000082453.1 ENSMUSG00000082453 ENSMUST00000120917 Gm11502 processed_pseudogene Interval_74848 chr17 56858019 56859221 + 0 NA intron (ENSMUSG00000024207.8, intron 6 of 14) protein_coding-intron (ENSMUSG00000024207.8, intron 6 of 14) 15827 ENSMUSG00000024207.8 ENSMUSG00000024207 ENSMUST00000043062 Acsbg2 protein_coding Interval_105735 chr3 89041004 89041257 + 0 NA intron (ENSMUSG00000028053.13, intron 10 of 27) protein_coding-intron (ENSMUSG00000028053.13, intron 9 of 26) 7997 ENSMUSG00000077804.1 ENSMUSG00000077804 ENSMUST00000104616 Gm24403 snoRNA Interval_134179 chr6 22387951 22388166 + 0 NA Intergenic Intergenic -44145 ENSMUSG00000029672.16 ENSMUSG00000029672 ENSMUST00000168965 Fam3c protein_coding Interval_24700 chr11 35979586 35980895 + 0 NA exon (ENSMUSG00000018849.6, exon 1 of 23) protein_coding-exon (ENSMUSG00000018849.6, exon 1 of 23) -15814 ENSMUSG00000081571.1 ENSMUSG00000081571 ENSMUST00000117261 Gm12125 processed_pseudogene Interval_88134 chr19 59468944 59470387 + 0 NA Intergenic Intergenic 6863 ENSMUSG00000043969.4 ENSMUSG00000043969 ENSMUST00000174573 Emx2 protein_coding Interval_48342 chr13 98316242 98317581 + 0 NA promoter-TSS (ENSMUSG00000021660.14) protein_coding-promoter-TSS (ENSMUSG00000021660.14) 95 ENSMUSG00000021660.14 ENSMUSG00000021660 ENSMUST00000133826 Btf3 protein_coding Interval_118584 chr4 132623922 132624692 + 0 NA Intergenic Intergenic -14739 ENSMUSG00000028886.15 ENSMUSG00000028886 ENSMUST00000130833 Eya3 protein_coding Interval_124494 chr5 49090062 49090925 + 0 NA intron (ENSMUSG00000029088.16, intron 1 of 8) protein_coding-intron (ENSMUSG00000029088.16, intron 1 of 8) -3723 ENSMUSG00000104661.1 ENSMUSG00000104661 ENSMUST00000197734 Gm42768 TEC Interval_139015 chr6 94207654 94207908 + 0 NA intron (ENSMUSG00000045095.16, intron 2 of 2) protein_coding-intron (ENSMUSG00000045095.16, intron 1 of 21) 116253 ENSMUSG00000107545.1 ENSMUSG00000107545 ENSMUST00000204466 Gm44307 processed_pseudogene Interval_3406 chr1 58033095 58033401 + 0 NA intron (ENSMUSG00000063558.4, intron 1 of 14) protein_coding-intron (ENSMUSG00000063558.4, intron 1 of 34) 3284 ENSMUSG00000063558.4 ENSMUSG00000063558 ENSMUST00000160168 Aox1 protein_coding Interval_75055 chr17 62607021 62607337 + 0 NA TTS (ENSMUSG00000048915.12) protein_coding-TTS (ENSMUSG00000048915.12) -150059 ENSMUSG00000064570.1 ENSMUSG00000064570 ENSMUST00000082636 Gm25800 snoRNA Interval_42173 chr13 9484972 9485225 + 0 NA intron (ENSMUSG00000048264.16, intron 1 of 36) protein_coding-intron (ENSMUSG00000048264.16, intron 1 of 38) 39198 ENSMUSG00000112948.1 ENSMUSG00000112948 ENSMUST00000223468 Gm48871 TEC Interval_103657 chr3 51427473 51427747 + 0 NA intron (ENSMUSG00000063273.11, intron 1 of 4) protein_coding-intron (ENSMUSG00000063273.11, intron 1 of 19) 3997 ENSMUSG00000103191.1 ENSMUSG00000103191 ENSMUST00000191756 Gm37646 TEC Interval_148322 chr7 80507499 80507902 + 0 NA promoter-TSS (ENSMUSG00000091989.1) processed_pseudogene-promoter-TSS (ENSMUSG00000091989.1) -87 ENSMUSG00000091989.1 ENSMUSG00000091989 ENSMUST00000166096 Ndufab1-ps processed_pseudogene Interval_96708 chr2 127302303 127302589 + 0 NA Intergenic Intergenic 10335 ENSMUSG00000027367.16 ENSMUSG00000027367 ENSMUST00000154549 Stard7 protein_coding Interval_160792 chr8 112331955 112332325 + 0 NA Intergenic Intergenic -95174 ENSMUSG00000110435.1 ENSMUSG00000110435 ENSMUST00000212314 Gm3635 processed_pseudogene Interval_29486 chr11 84365537 84365910 + 0 NA intron (ENSMUSG00000020532.18, intron 47 of 55) protein_coding-intron (ENSMUSG00000020532.18, intron 45 of 53) 147799 ENSMUSG00000018697.14 ENSMUSG00000018697 ENSMUST00000148434 Aatf protein_coding Interval_16487 chr10 63147450 63148405 + 0 NA exon (ENSMUSG00000020067.8, exon 9 of 20) protein_coding-exon (ENSMUSG00000020067.8, exon 9 of 20) -25243 ENSMUSG00000020067.8 ENSMUSG00000020067 ENSMUST00000218978 Mypn protein_coding Interval_39580 chr12 91059128 91059712 + 0 NA intron (ENSMUSG00000085004.2, intron 1 of 1) protein_coding-intron (ENSMUSG00000061533.16, intron 3 of 6) 13572 ENSMUSG00000085004.2 ENSMUSG00000085004 ENSMUST00000129932 5430427M07Rik antisense Interval_149824 chr7 101831947 101832212 + 0 NA exon (ENSMUSG00000032737.13, exon 8 of 29) protein_coding-exon (ENSMUSG00000032737.13, exon 8 of 29) 4524 ENSMUSG00000032737.13 ENSMUSG00000032737 ENSMUST00000209481 Inppl1 protein_coding Interval_42842 chr13 20272163 20272854 + 0 NA exon (ENSMUSG00000113649.1, exon 1 of 1) TEC-exon (ENSMUSG00000113649.1, exon 1 of 1) 603 ENSMUSG00000113649.1 ENSMUSG00000113649 ENSMUST00000222367 Gm47665 TEC Interval_114071 chr4 63033291 63034977 + 0 NA intron (ENSMUSG00000028358.15, intron 2 of 11) protein_coding-intron (ENSMUSG00000028358.15, intron 2 of 11) -86266 ENSMUSG00000028358.15 ENSMUSG00000028358 ENSMUST00000151324 Zfp618 protein_coding Interval_91300 chr2 37555144 37555717 + 0 NA intron (ENSMUSG00000035437.15, intron 7 of 13) protein_coding-intron (ENSMUSG00000035437.15, intron 19 of 25) 31088 ENSMUSG00000026915.16 ENSMUSG00000026915 ENSMUST00000144206 Strbp protein_coding Interval_3679 chr1 60753874 60754144 + 0 NA intron (ENSMUSG00000026012.2, intron 1 of 1) protein_coding-intron (ENSMUSG00000026012.2, intron 1 of 3) 7607 ENSMUSG00000026012.2 ENSMUSG00000026012 ENSMUST00000153207 Cd28 protein_coding Interval_148504 chr7 81918757 81919176 + 0 NA TTS (ENSMUSG00000109090.1) TEC-TTS (ENSMUSG00000109090.1) 1384 ENSMUSG00000109090.1 ENSMUSG00000109090 ENSMUST00000207066 Gm45088 TEC Interval_156021 chr8 42511272 42511472 + 0 NA Intergenic Intergenic 10831 ENSMUSG00000077755.1 ENSMUSG00000077755 ENSMUST00000104567 Gm23531 snoRNA Interval_71020 chr17 17234420 17235371 + 0 NA promoter-TSS (ENSMUSG00000116802.1) lincRNA-promoter-TSS (ENSMUSG00000116802.1) -27455 ENSMUSG00000116802.1 ENSMUSG00000116802 ENSMUST00000231376 Gm5165 lincRNA Interval_49055 chr13 107530683 107531692 + 0 NA intron (ENSMUSG00000114534.1, intron 2 of 3) processed_transcript-intron (ENSMUSG00000114534.1, intron 3 of 4) 34136 ENSMUSG00000114534.1 ENSMUSG00000114534 ENSMUST00000224949 Gm32004 processed_transcript Interval_78186 chr18 9974394 9974697 + 0 NA intron (ENSMUSG00000024287.8, intron 1 of 8) protein_coding-intron (ENSMUSG00000024287.8, intron 9 of 20) -11744 ENSMUSG00000024287.8 ENSMUSG00000024287 ENSMUST00000234111 Thoc1 protein_coding Interval_145127 chr7 30192662 30195204 + 0 NA promoter-TSS (ENSMUSG00000001794.13) protein_coding-promoter-TSS (ENSMUSG00000001794.13) -21 ENSMUSG00000097817.2 ENSMUSG00000097817 ENSMUST00000181153 Gm26810 antisense Interval_82156 chr18 68140045 68141067 + 0 NA intron (ENSMUSG00000024544.9, intron 3 of 5) protein_coding-intron (ENSMUSG00000024544.9, intron 3 of 5) -22182 ENSMUSG00000117891.1 ENSMUSG00000117891 ENSMUST00000236198 Gm41764 antisense Interval_156322 chr8 47376588 47377182 + 0 NA intron (ENSMUSG00000038143.16, intron 7 of 7) protein_coding-intron (ENSMUSG00000038143.16, intron 7 of 7) 36952 ENSMUSG00000038143.16 ENSMUSG00000038143 ENSMUST00000181417 Stox2 protein_coding Interval_103595 chr3 51019437 51019654 + 0 NA Intergenic Intergenic -40734 ENSMUSG00000103652.1 ENSMUSG00000103652 ENSMUST00000194109 Gm37209 TEC Interval_36476 chr12 45540609 45540889 + 0 NA intron (ENSMUSG00000112054.1, intron 4 of 4) lincRNA-intron (ENSMUSG00000112054.1, intron 4 of 4) 32538 ENSMUSG00000112768.1 ENSMUSG00000112768 ENSMUST00000218809 Gm48517 unprocessed_pseudogene Interval_109674 chr3 145923878 145924972 + 0 NA promoter-TSS (ENSMUSG00000028191.11) protein_coding-promoter-TSS (ENSMUSG00000028191.11) 68 ENSMUSG00000028191.11 ENSMUSG00000028191 ENSMUST00000198122 Bcl10 protein_coding Interval_11837 chr1 186116393 186117756 + 0 NA intron (ENSMUSG00000039246.8, intron 1 of 3) protein_coding-intron (ENSMUSG00000039246.8, intron 1 of 4) 214 ENSMUSG00000039246.8 ENSMUSG00000039246 ENSMUST00000195481 Lyplal1 protein_coding Interval_100523 chr2 169906303 169907026 + 0 NA intron (ENSMUSG00000047907.11, intron 1 of 1) protein_coding-intron (ENSMUSG00000047907.11, intron 2 of 2) 21771 ENSMUSG00000047907.11 ENSMUSG00000047907 ENSMUST00000140699 Tshz2 protein_coding Interval_125594 chr5 72387693 72387926 + 0 NA intron (ENSMUSG00000005220.10, intron 4 of 20) protein_coding-intron (ENSMUSG00000005220.10, intron 5 of 21) -21635 ENSMUSG00000093644.1 ENSMUSG00000093644 ENSMUST00000177510 Gm19560 processed_pseudogene Interval_121354 chr4 155200510 155201661 + 0 NA intron (ENSMUSG00000029050.15, intron 2 of 7) protein_coding-intron (ENSMUSG00000029050.15, intron 1 of 6) -12789 ENSMUSG00000029050.15 ENSMUSG00000029050 ENSMUST00000030917 Ski protein_coding Interval_69452 chr16 93559616 93560176 + 0 NA Intergenic Intergenic 26735 ENSMUSG00000022948.16 ENSMUSG00000022948 ENSMUST00000156298 Setd4 protein_coding Interval_145335 chr7 34008090 34008992 + 0 NA Intergenic Intergenic 5326 ENSMUSG00000066584.10 ENSMUSG00000066584 ENSMUST00000185399 Scgb2b27 protein_coding Interval_39676 chr12 92094853 92095215 + 0 NA Intergenic Intergenic 66405 ENSMUSG00000113643.1 ENSMUSG00000113643 ENSMUST00000222953 Gm40598 processed_pseudogene Interval_18626 chr10 88663989 88664408 + 0 NA Intergenic Intergenic -5968 ENSMUSG00000112428.1 ENSMUSG00000112428 ENSMUST00000219185 Gm48106 processed_pseudogene Interval_73283 chr17 35957462 35957777 + 0 NA TTS (ENSMUSG00000038762.15) protein_coding-TTS (ENSMUSG00000038762.15) 3195 ENSMUSG00000077931.1 ENSMUSG00000077931 ENSMUST00000104738 Mir877 miRNA Interval_31333 chr11 100029411 100029918 + 0 NA exon (ENSMUSG00000057723.3, exon 1 of 7) protein_coding-exon (ENSMUSG00000057723.3, exon 1 of 7) 204 ENSMUSG00000057723.3 ENSMUSG00000057723 ENSMUST00000073890 Krt33b protein_coding Interval_163585 chr9 22345694 22346250 + 0 NA intron (ENSMUSG00000036777.8, intron 1 of 3) protein_coding-intron (ENSMUSG00000036777.8, intron 20 of 23) 5284 ENSMUSG00000036777.8 ENSMUSG00000036777 ENSMUST00000215486 Anln protein_coding Interval_7473 chr1 131688636 131689149 + 0 NA intron (ENSMUSG00000052688.12, intron 1 of 5) protein_coding-intron (ENSMUSG00000052688.12, intron 1 of 4) 154 ENSMUSG00000052688.12 ENSMUSG00000052688 ENSMUST00000130848 Rab7b protein_coding Interval_31520 chr11 101140097 101140584 + 0 NA TTS (ENSMUSG00000092762.2) miRNA-TTS (ENSMUSG00000092762.2) 169 ENSMUSG00000092762.2 ENSMUSG00000092762 ENSMUST00000175021 Gm27626 miRNA Interval_126740 chr5 92450155 92450428 + 0 NA intron (ENSMUSG00000029426.8, intron 8 of 11) protein_coding-intron (ENSMUSG00000029426.8, intron 8 of 11) -8266 ENSMUSG00000099160.1 ENSMUSG00000099160 ENSMUST00000184064 Mir6415 miRNA Interval_37512 chr12 69481223 69481621 + 0 NA Intergenic Intergenic -5875 ENSMUSG00000113035.1 ENSMUSG00000113035 ENSMUST00000222980 5830428M24Rik processed_transcript Interval_51544 chr14 30016430 30016895 + 0 NA intron (ENSMUSG00000015970.19, intron 1 of 7) protein_coding-intron (ENSMUSG00000015970.19, intron 1 of 7) 7491 ENSMUSG00000015970.19 ENSMUSG00000015970 ENSMUST00000118917 Chdh protein_coding Interval_96887 chr2 129226120 129228053 + 0 NA promoter-TSS (ENSMUSG00000087528.1) processed_transcript-promoter-TSS (ENSMUSG00000087528.1) -648 ENSMUSG00000087528.1 ENSMUSG00000087528 ENSMUST00000126080 9830144P21Rik processed_transcript Interval_28305 chr11 75066469 75067195 + 0 NA promoter-TSS (ENSMUSG00000085738.2) processed_pseudogene-promoter-TSS (ENSMUSG00000085738.2) -70 ENSMUSG00000085738.2 ENSMUSG00000085738 ENSMUST00000119738 Gm12335 processed_pseudogene Interval_74832 chr17 56777050 56778124 + 0 NA intron (ENSMUSG00000024206.15, intron 15 of 16) protein_coding-intron (ENSMUSG00000024206.15, intron 16 of 17) 7337 ENSMUSG00000090273.3 ENSMUSG00000090273 ENSMUST00000168666 Prr22 protein_coding Interval_99614 chr2 163595147 163595432 + 0 NA Intergenic Intergenic -7025 ENSMUSG00000017679.16 ENSMUSG00000017679 ENSMUST00000132904 Ttpal protein_coding Interval_131242 chr5 135962127 135963446 + 0 NA promoter-TSS (ENSMUSG00000029699.13) protein_coding-promoter-TSS (ENSMUSG00000029699.13) 5134 ENSMUSG00000029699.13 ENSMUSG00000029699 ENSMUST00000154181 Ssc4d protein_coding Interval_55779 chr14 99947594 99947865 + 0 NA intron (ENSMUSG00000072294.5, intron 5 of 7) protein_coding-intron (ENSMUSG00000072294.5, intron 4 of 6) -47338 ENSMUSG00000072294.5 ENSMUSG00000072294 ENSMUST00000226544 Klf12 protein_coding Interval_147148 chr7 63875106 63875341 + 0 NA Intergenic Intergenic -22751 ENSMUSG00000098708.7 ENSMUSG00000098708 ENSMUST00000184360 Gm27252 processed_transcript Interval_156128 chr8 44998636 44999367 + 0 NA intron (ENSMUSG00000070047.14, intron 2 of 28) protein_coding-intron (ENSMUSG00000070047.14, intron 2 of 25) 23384 ENSMUSG00000097491.1 ENSMUSG00000097491 ENSMUST00000180753 Gm2366 antisense Interval_73432 chr17 37210634 37211969 + 0 NA exon (ENSMUSG00000049561.9, exon 1 of 1) protein_coding-exon (ENSMUSG00000049561.9, exon 1 of 1) 1817 ENSMUSG00000049561.9 ENSMUSG00000049561 ENSMUST00000216318 Olfr95 protein_coding Interval_2163 chr1 36795470 36795808 + 0 NA intron (ENSMUSG00000026116.11, intron 37 of 41) protein_coding-intron (ENSMUSG00000026116.11, intron 36 of 40) 16655 ENSMUSG00000026117.10 ENSMUSG00000026117 ENSMUST00000190128 Zap70 protein_coding Interval_157951 chr8 77185698 77186638 + 0 NA TTS (ENSMUSG00000031618.13) protein_coding-TTS (ENSMUSG00000031618.13) -8527 ENSMUSG00000088942.1 ENSMUSG00000088942 ENSMUST00000158317 Gm23260 snRNA Interval_150326 chr7 109616189 109617249 + 0 NA promoter-TSS (ENSMUSG00000031024.13) protein_coding-promoter-TSS (ENSMUSG00000031024.13) 34 ENSMUSG00000031024.13 ENSMUSG00000031024 ENSMUST00000208734 Denn2b protein_coding Interval_8226 chr1 136598260 136598971 + 0 NA Intergenic Intergenic 6853 ENSMUSG00000104366.1 ENSMUSG00000104366 ENSMUST00000193674 4933409D19Rik lincRNA Interval_14682 chr10 38968645 38969005 + 0 NA intron (ENSMUSG00000019846.11, intron 1 of 9) protein_coding-intron (ENSMUSG00000019846.11, intron 1 of 37) 40536 ENSMUSG00000111431.1 ENSMUSG00000111431 ENSMUST00000213395 Gm17779 processed_pseudogene Interval_18689 chr10 89343843 89345957 + 0 NA promoter-TSS (ENSMUSG00000035189.17) protein_coding-promoter-TSS (ENSMUSG00000035189.17) -87310 ENSMUSG00000035189.17 ENSMUSG00000035189 ENSMUST00000180843 Ano4 protein_coding Interval_132700 chr5 147253025 147254300 + 0 NA intron (ENSMUSG00000092570.7, intron 1 of 5) antisense-intron (ENSMUSG00000092570.7, intron 1 of 3) -16297 ENSMUSG00000029644.7 ENSMUSG00000029644 ENSMUST00000085591 Pdx1 protein_coding Interval_43400 chr13 30080446 30081375 + 0 NA Intergenic Intergenic -17583 ENSMUSG00000113366.1 ENSMUSG00000113366 ENSMUST00000220600 Gm47259 TEC Interval_105400 chr3 85991542 85992300 + 0 NA intron (ENSMUSG00000028082.14, intron 1 of 20) protein_coding-intron (ENSMUSG00000028082.14, intron 1 of 20) 10570 ENSMUSG00000049013.3 ENSMUSG00000049013 ENSMUST00000061343 Prss48 protein_coding Interval_34701 chr12 8770889 8773181 + 0 NA promoter-TSS (ENSMUSG00000096940.1) bidirectional_promoter_lncRNA-promoter-TSS (ENSMUSG00000096940.1) 622 ENSMUSG00000020592.14 ENSMUSG00000020592 ENSMUST00000160348 Sdc1 protein_coding Interval_58151 chr15 29791658 29791882 + 0 NA Intergenic Intergenic -78366 ENSMUSG00000092639.1 ENSMUSG00000092639 ENSMUST00000174898 Mir3964 miRNA Interval_66194 chr16 32257687 32258226 + 0 NA TTS (ENSMUSG00000022787.10) protein_coding-TTS (ENSMUSG00000022787.10) 9627 ENSMUSG00000088985.1 ENSMUSG00000088985 ENSMUST00000158360 Mir1946a miRNA Interval_3811 chr1 63219148 63219736 + 0 NA Intergenic Intergenic -5219 ENSMUSG00000046856.13 ENSMUSG00000046856 ENSMUST00000187533 Gpr1 protein_coding Interval_114287 chr4 70688473 70689326 + 0 NA Intergenic Intergenic -153971 ENSMUSG00000039270.9 ENSMUSG00000039270 ENSMUST00000037881 Megf9 protein_coding Interval_166635 chr9 61451228 61451491 + 0 NA intron (ENSMUSG00000111033.1, intron 2 of 2) lincRNA-intron (ENSMUSG00000111033.1, intron 2 of 2) 8768 ENSMUSG00000111033.1 ENSMUSG00000111033 ENSMUST00000214224 Gm34322 lincRNA Interval_147612 chr7 69957828 69958038 + 0 NA promoter-TSS (ENSMUSG00000077166.1) snoRNA-promoter-TSS (ENSMUSG00000077166.1) -29 ENSMUSG00000077166.1 ENSMUSG00000077166 ENSMUST00000103978 Gm24120 snoRNA Interval_157993 chr8 77629862 77630820 + 0 NA intron (ENSMUSG00000086451.8, intron 5 of 13) processed_transcript-intron (ENSMUSG00000086451.8, intron 5 of 13) 6169 ENSMUSG00000086781.1 ENSMUSG00000086781 ENSMUST00000134397 1700092C02Rik lincRNA Interval_167388 chr9 68268625 68268937 + 0 NA Intergenic Intergenic -11793 ENSMUSG00000088810.1 ENSMUSG00000088810 ENSMUST00000158185 Gm22382 snoRNA Interval_158743 chr8 85762086 85762487 + 0 NA intron (ENSMUSG00000109754.1, intron 4 of 4) protein_coding-intron (ENSMUSG00000031703.8, intron 10 of 17) 31470 ENSMUSG00000109754.1 ENSMUSG00000109754 ENSMUST00000210912 Gm39214 lincRNA Interval_74256 chr17 47757242 47757517 + 0 NA intron (ENSMUSG00000023990.18, intron 1 of 1) protein_coding-intron (ENSMUSG00000023990.18, intron 1 of 8) -30531 ENSMUSG00000023990.18 ENSMUSG00000023990 ENSMUST00000140715 Tfeb protein_coding Interval_19288 chr10 96120959 96121863 + 0 NA Intergenic Intergenic 8331 ENSMUSG00000112316.1 ENSMUSG00000112316 ENSMUST00000218910 Gm48425 processed_pseudogene Interval_131424 chr5 137102562 137104480 + 0 NA Intergenic Intergenic 12688 ENSMUSG00000043279.9 ENSMUSG00000043279 ENSMUST00000152207 Trim56 protein_coding Interval_172909 chrX 53236352 53236777 + 0 NA intron (ENSMUSG00000061082.11, intron 1 of 2) protein_coding-intron (ENSMUSG00000061082.11, intron 1 of 2) -26840 ENSMUSG00000061082.11 ENSMUSG00000061082 ENSMUST00000174390 Plac1 protein_coding Interval_63048 chr15 98812737 98813581 + 0 NA promoter-TSS (ENSMUSG00000097414.2) antisense-promoter-TSS (ENSMUSG00000097414.2) -169 ENSMUSG00000097414.2 ENSMUSG00000097414 ENSMUST00000230113 B130046B21Rik antisense Interval_14528 chr10 34919952 34920878 + 0 NA intron (ENSMUSG00000111042.1, intron 2 of 3) transcribed_processed_pseudogene-intron (ENSMUSG00000111042.1, intron 2 of 3) 22159 ENSMUSG00000110935.1 ENSMUSG00000110935 ENSMUST00000216459 Gm8834 processed_pseudogene Interval_22212 chr11 7192839 7193654 + 0 NA Intergenic Intergenic -4536 ENSMUSG00000020429.7 ENSMUSG00000020429 ENSMUST00000020704 Igfbp1 protein_coding Interval_107816 chr3 115714641 115716011 + 0 NA promoter-TSS (ENSMUSG00000045092.8) protein_coding-promoter-TSS (ENSMUSG00000045092.8) 176 ENSMUSG00000052769.7 ENSMUSG00000052769 ENSMUST00000064809 Gm9889 lincRNA Interval_56879 chr14 122751446 122751952 + 0 NA intron (ENSMUSG00000041650.15, intron 2 of 3) protein_coding-intron (ENSMUSG00000041650.15, intron 19 of 23) 65383 ENSMUSG00000115264.1 ENSMUSG00000115264 ENSMUST00000226674 Gm49260 TEC Interval_121745 chr5 6402615 6402817 + 0 NA Intergenic Intergenic -7722 ENSMUSG00000088380.1 ENSMUSG00000088380 ENSMUST00000157755 Gm24686 snRNA Interval_127573 chr5 105479724 105481380 + 0 NA exon (ENSMUSG00000070639.5, exon 4 of 5) protein_coding-exon (ENSMUSG00000070639.5, exon 4 of 5) -14918 ENSMUSG00000105826.1 ENSMUSG00000105826 ENSMUST00000196534 Gm42141 TEC Interval_47813 chr13 93389258 93389865 + 0 NA intron (ENSMUSG00000007617.18, intron 3 of 5) protein_coding-intron (ENSMUSG00000007617.18, intron 6 of 8) -21222 ENSMUSG00000114019.1 ENSMUSG00000114019 ENSMUST00000220564 Gm47155 TEC Interval_75089 chr17 63203693 63203865 + 0 NA TTS (ENSMUSG00000088853.1) snoRNA-TTS (ENSMUSG00000088853.1) 1041 ENSMUSG00000088853.1 ENSMUSG00000088853 ENSMUST00000158228 Gm24730 snoRNA Interval_165483 chr9 48604985 48606473 + 0 NA promoter-TSS (ENSMUSG00000032271.13) protein_coding-promoter-TSS (ENSMUSG00000032271.13) -8354 ENSMUSG00000032271.13 ENSMUSG00000032271 ENSMUST00000128076 Nnmt protein_coding Interval_87295 chr19 47432429 47432619 + 0 NA intron (ENSMUSG00000053617.12, intron 1 of 13) protein_coding-intron (ENSMUSG00000053617.12, intron 1 of 14) -22165 ENSMUSG00000053617.12 ENSMUSG00000053617 ENSMUST00000237828 Sh3pxd2a protein_coding Interval_75462 chr17 66730776 66731038 + 0 NA intron (ENSMUSG00000033278.10, intron 20 of 30) protein_coding-intron (ENSMUSG00000033278.10, intron 22 of 32) -7847 ENSMUSG00000114291.1 ENSMUSG00000114291 ENSMUST00000223962 Gm47471 antisense Interval_12376 chr1 192764342 192765778 + 0 NA intron (ENSMUSG00000037375.16, intron 1 of 4) protein_coding-intron (ENSMUSG00000037375.16, intron 1 of 11) 5932 ENSMUSG00000037375.16 ENSMUSG00000037375 ENSMUST00000192946 Hhat protein_coding Interval_138541 chr6 89042531 89043268 + 0 NA intron (ENSMUSG00000055403.13, intron 1 of 2) lincRNA-intron (ENSMUSG00000055403.13, intron 1 of 2) 92216 ENSMUSG00000055403.13 ENSMUSG00000055403 ENSMUST00000153981 4933427D06Rik lincRNA Interval_133068 chr5 149615541 149616792 + 0 NA TTS (ENSMUSG00000029657.15) protein_coding-TTS (ENSMUSG00000029657.15) 20172 ENSMUSG00000029657.15 ENSMUSG00000029657 ENSMUST00000201666 Hsph1 protein_coding Interval_40859 chr12 108924919 108925588 + 0 NA intron (ENSMUSG00000040877.16, intron 1 of 2) protein_coding-intron (ENSMUSG00000040877.16, intron 3 of 7) 12521 ENSMUSG00000040877.16 ENSMUSG00000040877 ENSMUST00000221510 Wdr25 protein_coding Interval_88036 chr19 58183333 58183649 + 0 NA Intergenic Intergenic -20648 ENSMUSG00000087002.1 ENSMUSG00000087002 ENSMUST00000143595 Gm16277 antisense Interval_96340 chr2 121764564 121765498 + 0 NA promoter-TSS (ENSMUSG00000027238.17) protein_coding-promoter-TSS (ENSMUSG00000027238.17) 46501 ENSMUSG00000084244.1 ENSMUSG00000084244 ENSMUST00000118165 Gm14020 processed_pseudogene Interval_79906 chr18 35840124 35840884 + 0 NA intron (ENSMUSG00000046668.9, intron 1 of 1) protein_coding-intron (ENSMUSG00000046668.9, intron 1 of 2) -9411 ENSMUSG00000100320.1 ENSMUSG00000100320 ENSMUST00000188160 Gm29417 antisense Interval_35686 chr12 27490651 27490841 + 0 NA Intergenic Intergenic -107455 ENSMUSG00000113421.1 ENSMUSG00000113421 ENSMUST00000220893 Gm4166 lincRNA Interval_160671 chr8 111502253 111502472 + 0 NA intron (ENSMUSG00000031959.15, intron 4 of 26) protein_coding-intron (ENSMUSG00000031959.15, intron 4 of 26) -11609 ENSMUSG00000031959.15 ENSMUSG00000031959 ENSMUST00000212327 Wdr59 protein_coding Interval_126725 chr5 92331850 92332021 + 0 NA promoter-TSS (ENSMUSG00000034842.16) protein_coding-promoter-TSS (ENSMUSG00000034842.16) 108 ENSMUSG00000034842.16 ENSMUSG00000034842 ENSMUST00000152041 Art3 protein_coding Interval_165715 chr9 51430575 51430870 + 0 NA Intergenic Intergenic -101798 ENSMUSG00000036027.13 ENSMUSG00000036027 ENSMUST00000238450 1810046K07Rik protein_coding Interval_26359 chr11 57241381 57241719 + 0 NA intron (ENSMUSG00000020524.16, intron 10 of 15) protein_coding-intron (ENSMUSG00000020524.16, intron 10 of 15) 65032 ENSMUSG00000020524.16 ENSMUSG00000020524 ENSMUST00000173531 Gria1 protein_coding Interval_123713 chr5 34674963 34675278 + 0 NA TTS (ENSMUSG00000052783.16) protein_coding-TTS (ENSMUSG00000052783.16) 24402 ENSMUSG00000085166.1 ENSMUSG00000085166 ENSMUST00000134467 Gm15522 antisense Interval_89408 chr2 20519268 20522145 + 0 NA intron (ENSMUSG00000036617.17, intron 2 of 5) protein_coding-intron (ENSMUSG00000036617.17, intron 2 of 18) 10659 ENSMUSG00000036617.17 ENSMUSG00000036617 ENSMUST00000156587 Etl4 protein_coding Interval_135841 chr6 47835168 47836474 + 0 NA exon (ENSMUSG00000062519.13, exon 1 of 6) protein_coding-exon (ENSMUSG00000062519.13, exon 1 of 6) 160 ENSMUSG00000062519.13 ENSMUSG00000062519 ENSMUST00000114598 Zfp398 protein_coding Interval_158133 chr8 79078408 79080259 + 0 NA intron (ENSMUSG00000071064.15, intron 4 of 13) protein_coding-intron (ENSMUSG00000071064.15, intron 4 of 14) 50746 ENSMUSG00000071064.15 ENSMUSG00000071064 ENSMUST00000129613 Zfp827 protein_coding Interval_68562 chr16 78756456 78756677 + 0 NA Intergenic Intergenic -1167 ENSMUSG00000116730.1 ENSMUSG00000116730 ENSMUST00000232014 4930403O18Rik TEC Interval_154500 chr8 18711743 18712153 + 0 NA exon (ENSMUSG00000039842.15, exon 12 of 12) protein_coding-exon (ENSMUSG00000039842.15, exon 12 of 12) -12401 ENSMUSG00000031465.6 ENSMUSG00000031465 ENSMUST00000170200 Angpt2 protein_coding Interval_30214 chr11 90680657 90680926 + 0 NA intron (ENSMUSG00000020541.12, intron 3 of 5) protein_coding-intron (ENSMUSG00000020541.12, intron 3 of 15) 6797 ENSMUSG00000020541.12 ENSMUSG00000020541 ENSMUST00000131055 Tom1l1 protein_coding Interval_154420 chr8 16077319 16078093 + 0 NA intron (ENSMUSG00000060924.15, intron 33 of 69) protein_coding-intron (ENSMUSG00000060924.15, intron 33 of 69) 91132 ENSMUSG00000093142.1 ENSMUSG00000093142 ENSMUST00000175401 Mir3106 miRNA Interval_18403 chr10 85555134 85555445 + 0 NA intron (ENSMUSG00000020042.15, intron 2 of 16) protein_coding-intron (ENSMUSG00000020042.15, intron 2 of 9) -89914 ENSMUSG00000020042.15 ENSMUSG00000020042 ENSMUST00000145433 Btbd11 protein_coding Interval_105514 chr3 87172368 87173250 + 0 NA intron (ENSMUSG00000041734.15, intron 1 of 15) protein_coding-intron (ENSMUSG00000041734.15, intron 1 of 13) 1891 ENSMUSG00000041734.15 ENSMUSG00000041734 ENSMUST00000041732 Kirrel protein_coding Interval_167776 chr9 72669011 72669752 + 0 NA exon (ENSMUSG00000032216.15, exon 1 of 2) protein_coding-exon (ENSMUSG00000032216.15, exon 1 of 2) 7035 ENSMUSG00000032216.15 ENSMUSG00000032216 ENSMUST00000184287 Nedd4 protein_coding Interval_24761 chr11 36914168 36914453 + 0 NA intron (ENSMUSG00000049336.16, intron 1 of 28) protein_coding-intron (ENSMUSG00000049336.16, intron 1 of 28) 29856 ENSMUSG00000049336.16 ENSMUSG00000049336 ENSMUST00000157030 Tenm2 protein_coding Interval_73749 chr17 43212218 43213166 + 0 NA Intergenic Intergenic -54426 ENSMUSG00000117011.1 ENSMUSG00000117011 ENSMUST00000232795 E130008D07Rik lincRNA Interval_18166 chr10 83145820 83146731 + 0 NA intron (ENSMUSG00000034612.7, intron 2 of 2) protein_coding-intron (ENSMUSG00000034612.7, intron 2 of 2) -4237 ENSMUSG00000090200.1 ENSMUSG00000090200 ENSMUST00000160997 1700025N21Rik antisense Interval_173336 chrX 80876189 80876594 + 0 NA Intergenic Intergenic 56557 ENSMUSG00000083944.1 ENSMUSG00000083944 ENSMUST00000117680 Gm14733 processed_pseudogene Interval_104322 chr3 63372024 63372863 + 0 NA intron (ENSMUSG00000027820.12, intron 22 of 22) protein_coding-intron (ENSMUSG00000027820.12, intron 22 of 22) -66808 ENSMUSG00000104336.1 ENSMUSG00000104336 ENSMUST00000192500 Gm34240 lincRNA Interval_68022 chr16 63968495 63969286 + 0 NA Intergenic Intergenic -13760 ENSMUSG00000116722.1 ENSMUSG00000116722 ENSMUST00000231945 Gm49627 processed_pseudogene Interval_93374 chr2 72491403 72492170 + 0 NA Intergenic Intergenic 15533 ENSMUSG00000055612.15 ENSMUSG00000055612 ENSMUST00000137880 Cdca7 protein_coding Interval_73713 chr17 42942353 42944421 + 0 NA Intergenic Intergenic -73181 ENSMUSG00000023915.5 ENSMUSG00000023915 ENSMUST00000233482 Tnfrsf21 protein_coding Interval_88352 chr2 4293348 4294719 + 0 NA intron (ENSMUSG00000087355.7, intron 3 of 4) protein_coding-intron (ENSMUSG00000026657.17, intron 1 of 22) 7134 ENSMUSG00000087355.7 ENSMUSG00000087355 ENSMUST00000156609 Gm13187 processed_transcript Interval_78218 chr18 10269355 10270865 + 0 NA Intergenic Intergenic 7903 ENSMUSG00000117552.1 ENSMUSG00000117552 ENSMUST00000234693 Gm5686 processed_pseudogene Interval_140561 chr6 119526415 119526838 + 0 NA intron (ENSMUSG00000030170.14, intron 1 of 4) protein_coding-intron (ENSMUSG00000030170.14, intron 1 of 4) 17721 ENSMUSG00000030170.14 ENSMUSG00000030170 ENSMUST00000119369 Wnt5b protein_coding Interval_141623 chr6 131418035 131418509 + 0 NA Intergenic Intergenic 15639 ENSMUSG00000107832.1 ENSMUSG00000107832 ENSMUST00000204695 Gm18688 processed_pseudogene Interval_96960 chr2 130034166 130034525 + 0 NA intron (ENSMUSG00000027401.9, intron 7 of 12) protein_coding-intron (ENSMUSG00000027401.9, intron 7 of 12) -17937 ENSMUSG00000098347.1 ENSMUSG00000098347 ENSMUST00000185120 Mir6339 miRNA Interval_130367 chr5 126754872 126755866 + 0 NA Intergenic Intergenic -28085 ENSMUSG00000106235.1 ENSMUSG00000106235 ENSMUST00000200003 Gm33347 lincRNA Interval_47380 chr13 82597974 82598172 + 0 NA Intergenic Intergenic 100260 ENSMUSG00000106655.1 ENSMUSG00000106655 ENSMUST00000198795 Mir3961 miRNA Interval_17163 chr10 73096657 73100331 + 0 NA promoter-TSS (ENSMUSG00000052613.16) protein_coding-promoter-TSS (ENSMUSG00000052613.16) -11789 ENSMUSG00000111994.1 ENSMUSG00000111994 ENSMUST00000219920 A330049N07Rik lincRNA Interval_59553 chr15 55245840 55246075 + 0 NA intron (ENSMUSG00000022419.16, intron 8 of 8) protein_coding-intron (ENSMUSG00000022419.16, intron 8 of 8) 16646 ENSMUSG00000095792.1 ENSMUSG00000095792 ENSMUST00000179457 Gm26296 snRNA Interval_106083 chr3 92753408 92753642 + 0 NA Intergenic Intergenic -1187 ENSMUSG00000027919.5 ENSMUSG00000027919 ENSMUST00000029527 Lce1g protein_coding Interval_128454 chr5 113397230 113397591 + 0 NA Intergenic Intergenic 40116 ENSMUSG00000053873.1 ENSMUSG00000053873 ENSMUST00000066573 Aym1 protein_coding Interval_155213 chr8 27606563 27607940 + 0 NA intron (ENSMUSG00000074404.6, intron 2 of 3) lincRNA-intron (ENSMUSG00000074404.6, intron 2 of 5) 2874 ENSMUSG00000074404.6 ENSMUSG00000074404 ENSMUST00000211230 Gm1698 lincRNA Interval_54861 chr14 75879090 75879436 + 0 NA Intergenic Intergenic 31358 ENSMUSG00000065147.1 ENSMUSG00000065147 ENSMUST00000083213 Snora31 snoRNA Interval_128572 chr5 114099750 114100971 + 0 NA promoter-TSS (ENSMUSG00000029592.11) protein_coding-promoter-TSS (ENSMUSG00000029592.11) -8566 ENSMUSG00000106484.1 ENSMUSG00000106484 ENSMUST00000197629 Gm17833 processed_pseudogene Interval_70791 chr17 14545556 14546434 + 0 NA Intergenic Intergenic 96424 ENSMUSG00000116801.1 ENSMUSG00000116801 ENSMUST00000232609 Gm38551 lincRNA Interval_153434 chr7 144775173 144776521 + 0 NA Intergenic Intergenic 11084 ENSMUSG00000109009.1 ENSMUSG00000109009 ENSMUST00000208181 Gm44929 lincRNA Interval_133197 chr5 150466156 150466827 + 0 NA intron (ENSMUSG00000056602.12, intron 52 of 60) protein_coding-intron (ENSMUSG00000056602.12, intron 52 of 60) 19709 ENSMUSG00000107262.1 ENSMUSG00000107262 ENSMUST00000201000 Gm18753 processed_pseudogene Interval_8932 chr1 152407271 152408308 + 0 NA promoter-TSS (ENSMUSG00000080878.1) processed_pseudogene-promoter-TSS (ENSMUSG00000080878.1) -264 ENSMUSG00000080878.1 ENSMUSG00000080878 ENSMUST00000121610 Gm15618 processed_pseudogene Interval_173277 chrX 75873487 75875495 + 0 NA promoter-TSS (ENSMUSG00000016382.15) protein_coding-promoter-TSS (ENSMUSG00000016382.15) -11592 ENSMUSG00000077650.1 ENSMUSG00000077650 ENSMUST00000104462 Gm23320 snoRNA Interval_29646 chr11 85793820 85794483 + 0 NA intron (ENSMUSG00000087013.7, intron 4 of 4) protein_coding-intron (ENSMUSG00000059439.15, intron 23 of 24) 15339 ENSMUSG00000089508.1 ENSMUSG00000089508 ENSMUST00000158883 Gm23473 rRNA Interval_138661 chr6 90914011 90914697 + 0 NA intron (ENSMUSG00000034312.15, intron 1 of 15) protein_coding-intron (ENSMUSG00000034312.15, intron 1 of 15) 8535 ENSMUSG00000099662.1 ENSMUSG00000099662 ENSMUST00000117103 Ppp1r2-ps2 processed_pseudogene Interval_105562 chr3 87768553 87769370 + 0 NA promoter-TSS (ENSMUSG00000028073.15) protein_coding-promoter-TSS (ENSMUSG00000028073.15) 5 ENSMUSG00000028073.15 ENSMUSG00000028073 ENSMUST00000173184 Pear1 protein_coding Interval_112034 chr4 33367150 33367465 + 0 NA intron (ENSMUSG00000028274.17, intron 10 of 15) protein_coding-intron (ENSMUSG00000028274.17, intron 10 of 15) 42409 ENSMUSG00000028274.17 ENSMUSG00000028274 ENSMUST00000146870 Rngtt protein_coding Interval_58034 chr15 26876048 26876380 + 0 NA intron (ENSMUSG00000043556.10, intron 1 of 1) protein_coding-intron (ENSMUSG00000043556.10, intron 1 of 3) 19304 ENSMUSG00000043556.10 ENSMUSG00000043556 ENSMUST00000226377 Fbxl7 protein_coding Interval_142880 chr6 146641818 146643547 + 0 NA promoter-TSS (ENSMUSG00000030291.12) protein_coding-promoter-TSS (ENSMUSG00000030291.12) 91 ENSMUSG00000030291.12 ENSMUSG00000030291 ENSMUST00000075077 Med21 protein_coding Interval_69832 chr16 97270811 97272933 + 0 NA Intergenic Intergenic -133397 ENSMUSG00000116686.1 ENSMUSG00000116686 ENSMUST00000232315 Gm49681 processed_pseudogene Interval_79804 chr18 35192100 35192773 + 0 NA intron (ENSMUSG00000037815.7, intron 5 of 15) protein_coding-intron (ENSMUSG00000037815.7, intron 7 of 17) 22588 ENSMUSG00000071862.3 ENSMUSG00000071862 ENSMUST00000236680 Lrrtm2 protein_coding Interval_106352 chr3 95565560 95565788 + 0 NA intron (ENSMUSG00000028109.14, intron 3 of 14) protein_coding-intron (ENSMUSG00000028109.14, intron 3 of 14) 5996 ENSMUSG00000028109.14 ENSMUSG00000028109 ENSMUST00000107154 Hormad1 protein_coding Interval_46304 chr13 63563049 63566508 + 0 NA promoter-TSS (ENSMUSG00000021466.12) protein_coding-promoter-TSS (ENSMUSG00000021466.12) 3276 ENSMUSG00000102282.1 ENSMUSG00000102282 ENSMUST00000195845 A930032L01Rik TEC Interval_128436 chr5 113306902 113307596 + 0 NA intron (ENSMUSG00000042216.13, intron 2 of 17) protein_coding-intron (ENSMUSG00000042216.13, intron 2 of 24) 14404 ENSMUSG00000104705.1 ENSMUSG00000104705 ENSMUST00000199950 4930405N21Rik TEC Interval_68702 chr16 84817616 84817872 + 0 NA promoter-TSS (ENSMUSG00000088249.1) rRNA-promoter-TSS (ENSMUSG00000088249.1) -353 ENSMUSG00000088249.1 ENSMUSG00000088249 ENSMUST00000157624 Gm25908 rRNA Interval_125332 chr5 66235775 66236078 + 0 NA Intergenic Intergenic 21179 ENSMUSG00000107125.1 ENSMUSG00000107125 ENSMUST00000201941 Gm3822 TEC Interval_127346 chr5 103309623 103310719 + 0 NA Intergenic Intergenic -11142 ENSMUSG00000104956.1 ENSMUSG00000104956 ENSMUST00000198193 4930429D17Rik lincRNA Interval_20260 chr10 116494037 116494326 + 0 NA intron (ENSMUSG00000020166.15, intron 13 of 15) protein_coding-intron (ENSMUSG00000020166.15, intron 11 of 13) 5297 ENSMUSG00000020166.15 ENSMUSG00000020166 ENSMUST00000218744 Cnot2 protein_coding Interval_138397 chr6 87860285 87860564 + 0 NA Intergenic Intergenic 9215 ENSMUSG00000107798.1 ENSMUSG00000107798 ENSMUST00000204964 Gm44064 TEC Interval_91502 chr2 39617758 39618316 + 0 NA Intergenic Intergenic 40934 ENSMUSG00000108203.1 ENSMUSG00000108203 ENSMUST00000205220 Gm43944 processed_pseudogene Interval_121053 chr4 152468080 152468293 + 0 NA intron (ENSMUSG00000028931.12, intron 1 of 16) protein_coding-intron (ENSMUSG00000028931.12, intron 1 of 14) 9253 ENSMUSG00000028931.12 ENSMUSG00000028931 ENSMUST00000162017 Kcnab2 protein_coding Interval_82099 chr18 67723915 67725152 + 0 NA promoter-TSS (ENSMUSG00000024539.17) protein_coding-promoter-TSS (ENSMUSG00000024539.17) -34309 ENSMUSG00000024539.17 ENSMUSG00000024539 ENSMUST00000128169 Ptpn2 protein_coding Interval_54366 chr14 67946576 67947051 + 0 NA Intergenic Intergenic -87068 ENSMUSG00000098866.1 ENSMUSG00000098866 ENSMUST00000183732 Mir6539 miRNA Interval_141877 chr6 135070086 135071093 + 0 NA intron (ENSMUSG00000046733.7, intron 1 of 3) protein_coding-intron (ENSMUSG00000046733.7, intron 1 of 3) 4938 ENSMUSG00000046733.7 ENSMUSG00000046733 ENSMUST00000050104 Gprc5a protein_coding Interval_87293 chr19 47427834 47428472 + 0 NA intron (ENSMUSG00000053617.12, intron 1 of 13) protein_coding-intron (ENSMUSG00000053617.12, intron 1 of 14) -17794 ENSMUSG00000053617.12 ENSMUSG00000053617 ENSMUST00000237828 Sh3pxd2a protein_coding Interval_133611 chr6 7612603 7614696 + 0 NA Intergenic Intergenic -30257 ENSMUSG00000099182.1 ENSMUSG00000099182 ENSMUST00000184206 Gm8676 processed_pseudogene Interval_121232 chr4 154252493 154253087 + 0 NA TTS (ENSMUSG00000057751.14) protein_coding-TTS (ENSMUSG00000057751.14) 3494 ENSMUSG00000057751.14 ENSMUSG00000057751 ENSMUST00000142110 Megf6 protein_coding Interval_44728 chr13 47919579 47919753 + 0 NA intron (ENSMUSG00000114959.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000114959.1, intron 1 of 2) 9231 ENSMUSG00000114959.1 ENSMUSG00000114959 ENSMUST00000223677 G630093K05Rik lincRNA Interval_158963 chr8 88271974 88273265 + 0 NA intron (ENSMUSG00000031659.13, intron 1 of 27) protein_coding-intron (ENSMUSG00000031659.13, intron 1 of 27) 20647 ENSMUSG00000036779.12 ENSMUSG00000036779 ENSMUST00000154115 Tent4b protein_coding Interval_161379 chr8 120082487 120083334 + 0 NA intron (ENSMUSG00000031823.14, intron 4 of 4) protein_coding-intron (ENSMUSG00000031823.14, intron 7 of 7) 3925 ENSMUSG00000031823.14 ENSMUSG00000031823 ENSMUST00000123186 Zdhhc7 protein_coding Interval_84291 chr19 9887606 9888329 + 0 NA intron (ENSMUSG00000024660.9, intron 4 of 16) protein_coding-intron (ENSMUSG00000024660.9, intron 4 of 17) 10740 ENSMUSG00000118325.1 ENSMUSG00000118325 ENSMUST00000237300 Gm50324 TEC Interval_107492 chr3 108084949 108086995 + 0 NA promoter-TSS (ENSMUSG00000056411.2) antisense-promoter-TSS (ENSMUSG00000056411.2) 388 ENSMUSG00000056411.2 ENSMUSG00000056411 ENSMUST00000070502 Gm12500 antisense Interval_34989 chr12 16495006 16495867 + 0 NA Intergenic Intergenic 115530 ENSMUSG00000020593.16 ENSMUSG00000020593 ENSMUST00000221146 Lpin1 protein_coding Interval_29663 chr11 85888312 85888944 + 0 NA intron (ENSMUSG00000000094.12, intron 1 of 8) protein_coding-intron (ENSMUSG00000000094.12, intron 1 of 8) 2206 ENSMUSG00000000094.12 ENSMUSG00000000094 ENSMUST00000108045 Tbx4 protein_coding Interval_69537 chr16 94097893 94098616 + 0 NA intron (ENSMUSG00000062713.8, intron 3 of 10) protein_coding-intron (ENSMUSG00000062713.8, intron 3 of 10) 13323 ENSMUSG00000062713.8 ENSMUSG00000062713 ENSMUST00000231295 Sim2 protein_coding Interval_76925 chr17 84996347 84996746 + 0 NA intron (ENSMUSG00000061130.13, intron 1 of 6) protein_coding-intron (ENSMUSG00000061130.13, intron 2 of 5) 2866 ENSMUSG00000061130.13 ENSMUSG00000061130 ENSMUST00000234851 Ppm1b protein_coding Interval_62387 chr15 91572397 91573607 + 0 NA exon (ENSMUSG00000036298.10, exon 1 of 3) protein_coding-exon (ENSMUSG00000036298.10, exon 1 of 3) -13219 ENSMUSG00000087737.1 ENSMUSG00000087737 ENSMUST00000157112 Gm24647 rRNA Interval_92597 chr2 61139300 61139577 + 0 NA Intergenic Intergenic -85354 ENSMUSG00000083197.1 ENSMUSG00000083197 ENSMUST00000120675 Gm13581 processed_pseudogene Interval_102628 chr3 28657827 28659000 + 0 NA intron (ENSMUSG00000027692.16, intron 26 of 30) protein_coding-intron (ENSMUSG00000027692.16, intron 26 of 30) -63104 ENSMUSG00000027690.13 ENSMUSG00000027690 ENSMUST00000169047 Slc2a2 protein_coding Interval_59657 chr15 57627016 57627224 + 0 NA Intergenic Intergenic -68609 ENSMUSG00000071757.10 ENSMUSG00000071757 ENSMUST00000160990 Zhx2 protein_coding Interval_163215 chr9 18383033 18383775 + 0 NA intron (ENSMUSG00000043943.14, intron 5 of 21) protein_coding-intron (ENSMUSG00000043943.14, intron 4 of 20) -17138 ENSMUSG00000110944.1 ENSMUSG00000110944 ENSMUST00000216944 Gm19174 processed_pseudogene Interval_144310 chr7 24422033 24422381 + 0 NA intron (ENSMUSG00000002210.11, intron 3 of 3) protein_coding-intron (ENSMUSG00000002210.11, intron 13 of 13) 7474 ENSMUSG00000002210.11 ENSMUSG00000002210 ENSMUST00000146686 Smg9 protein_coding Interval_66711 chr16 36531110 36532402 + 0 NA intron (ENSMUSG00000051980.13, intron 2 of 2) protein_coding-intron (ENSMUSG00000051980.13, intron 1 of 6) -19106 ENSMUSG00000089118.1 ENSMUSG00000089118 ENSMUST00000158493 Gm25902 misc_RNA Interval_108949 chr3 133551733 133552412 + 0 NA intron (ENSMUSG00000105085.1, intron 1 of 2) antisense-intron (ENSMUSG00000105085.1, intron 1 of 2) 6975 ENSMUSG00000105085.1 ENSMUSG00000105085 ENSMUST00000199268 Gm42567 antisense Interval_43121 chr13 24359265 24359470 + 0 NA intron (ENSMUSG00000084788.2, intron 3 of 3) protein_coding-intron (ENSMUSG00000016756.17, intron 2 of 17) -30327 ENSMUSG00000118631.1 ENSMUSG00000118631 ENSMUST00000239334 AL590864.1 antisense Interval_169026 chr9 90440762 90440995 + 0 NA Intergenic Intergenic 88883 ENSMUSG00000065881.1 ENSMUSG00000065881 ENSMUST00000083947 Gm22866 snRNA Interval_151874 chr7 127237621 127239317 + 0 NA TTS (ENSMUSG00000045598.10) protein_coding-TTS (ENSMUSG00000045598.10) 5175 ENSMUSG00000045598.10 ENSMUSG00000045598 ENSMUST00000205367 Zfp553 protein_coding Interval_80737 chr18 46705284 46706276 + 0 NA Intergenic Intergenic 22575 ENSMUSG00000033022.8 ENSMUSG00000033022 ENSMUST00000234222 Cdo1 protein_coding Interval_48673 chr13 101055267 101055546 + 0 NA Intergenic Intergenic -16160 ENSMUSG00000096722.2 ENSMUSG00000096722 ENSMUST00000179479 Hmgb1-ps9 processed_pseudogene Interval_32165 chr11 105847817 105848240 + 0 NA intron (ENSMUSG00000053580.16, intron 10 of 25) protein_coding-intron (ENSMUSG00000053580.16, intron 10 of 25) -27877 ENSMUSG00000081270.1 ENSMUSG00000081270 ENSMUST00000119992 Gm11653 processed_pseudogene Interval_88747 chr2 10256905 10257443 + 0 NA TTS (ENSMUSG00000025780.7) protein_coding-TTS (ENSMUSG00000025780.7) 103603 ENSMUSG00000025780.7 ENSMUSG00000025780 ENSMUST00000026886 Itih5 protein_coding Interval_110154 chr3 153830944 153833032 + 0 NA TTS (ENSMUSG00000077174.1) snoRNA-TTS (ENSMUSG00000077174.1) 818 ENSMUSG00000077174.1 ENSMUSG00000077174 ENSMUST00000103986 Gm25757 snoRNA Interval_133688 chr6 8693112 8694004 + 0 NA intron (ENSMUSG00000062995.12, intron 5 of 10) protein_coding-intron (ENSMUSG00000062995.12, intron 6 of 13) 64841 ENSMUSG00000062995.12 ENSMUSG00000062995 ENSMUST00000151758 Ica1 protein_coding Interval_76825 chr17 84349838 84350100 + 0 NA intron (ENSMUSG00000024251.10, intron 11 of 14) protein_coding-intron (ENSMUSG00000024251.10, intron 26 of 37) -36290 ENSMUSG00000024251.10 ENSMUSG00000024251 ENSMUST00000234313 Thada protein_coding Interval_53873 chr14 63002157 63002466 + 0 NA Intergenic Intergenic 4234 ENSMUSG00000075573.4 ENSMUSG00000075573 ENSMUST00000100492 Defb47 protein_coding Interval_77598 chr17 92713959 92714472 + 0 NA Intergenic Intergenic 4861 ENSMUSG00000117625.1 ENSMUSG00000117625 ENSMUST00000234136 Gm21018 processed_pseudogene Interval_106828 chr3 101143436 101144797 + 0 NA Intergenic Intergenic -56723 ENSMUSG00000105717.1 ENSMUSG00000105717 ENSMUST00000200367 Gm43465 sense_intronic Interval_164647 chr9 40300152 40300501 + 0 NA intron (ENSMUSG00000040111.17, intron 16 of 18) protein_coding-intron (ENSMUSG00000040111.17, intron 17 of 19) 17873 ENSMUSG00000049281.16 ENSMUSG00000049281 ENSMUST00000216398 Scn3b protein_coding Interval_137361 chr6 71696081 71696488 + 0 NA Intergenic Intergenic -11586 ENSMUSG00000052852.8 ENSMUSG00000052852 ENSMUST00000212631 Reep1 protein_coding Interval_132572 chr5 146405030 146405232 + 0 NA intron (ENSMUSG00000029636.11, intron 1 of 9) protein_coding-intron (ENSMUSG00000029636.11, intron 1 of 9) -50478 ENSMUSG00000029636.11 ENSMUSG00000029636 ENSMUST00000238592 Wasf3 protein_coding Interval_157968 chr8 77406241 77407510 + 0 NA intron (ENSMUSG00000037148.8, intron 10 of 21) protein_coding-intron (ENSMUSG00000037148.8, intron 10 of 22) -34359 ENSMUSG00000109873.1 ENSMUSG00000109873 ENSMUST00000209499 Gm45407 TEC Interval_75676 chr17 70561452 70561637 + 0 NA promoter-TSS (ENSMUSG00000003279.17) protein_coding-promoter-TSS (ENSMUSG00000003279.17) 194038 ENSMUSG00000097282.1 ENSMUSG00000097282 ENSMUST00000181546 5031415H12Rik antisense Interval_6846 chr1 120073527 120075028 + 0 NA promoter-TSS (ENSMUSG00000050777.7) protein_coding-promoter-TSS (ENSMUSG00000050777.7) -203 ENSMUSG00000050777.7 ENSMUSG00000050777 ENSMUST00000056089 Tmem37 protein_coding Interval_67537 chr16 50431414 50432739 + 0 NA intron (ENSMUSG00000022641.15, intron 1 of 1) protein_coding-intron (ENSMUSG00000022641.15, intron 1 of 15) 233 ENSMUSG00000022641.15 ENSMUSG00000022641 ENSMUST00000130210 Bbx protein_coding Interval_18265 chr10 84428630 84429901 + 0 NA intron (ENSMUSG00000020032.14, intron 1 of 6) protein_coding-intron (ENSMUSG00000020032.14, intron 1 of 6) -11561 ENSMUSG00000111583.1 ENSMUSG00000111583 ENSMUST00000214135 Gm47962 bidirectional_promoter_lncRNA Interval_76912 chr17 84941197 84941833 + 0 NA intron (ENSMUSG00000097047.2, intron 2 of 3) bidirectional_promoter_lncRNA-intron (ENSMUSG00000097047.2, intron 2 of 3) 15724 ENSMUSG00000097047.2 ENSMUSG00000097047 ENSMUST00000181147 1110020A21Rik bidirectional_promoter_lncRNA Interval_131226 chr5 135909238 135910449 + 0 NA exon (ENSMUSG00000051391.9, exon 2 of 2) protein_coding-exon (ENSMUSG00000051391.9, exon 2 of 2) -13357 ENSMUSG00000105047.1 ENSMUSG00000105047 ENSMUST00000196247 Gm42533 processed_pseudogene Interval_54654 chr14 72938631 72939148 + 0 NA Intergenic Intergenic 36730 ENSMUSG00000115475.1 ENSMUSG00000115475 ENSMUST00000228487 Gm49295 processed_pseudogene Interval_120426 chr4 148550992 148551224 + 0 NA intron (ENSMUSG00000028991.15, intron 54 of 57) protein_coding-intron (ENSMUSG00000028991.15, intron 54 of 57) -4589 ENSMUSG00000088625.1 ENSMUSG00000088625 ENSMUST00000158000 Gm23318 snRNA Interval_27584 chr11 68871431 68872009 + 0 NA intron (ENSMUSG00000018736.14, intron 1 of 7) protein_coding-intron (ENSMUSG00000018736.14, intron 1 of 7) -11724 ENSMUSG00000018736.14 ENSMUSG00000018736 ENSMUST00000127469 Ndel1 protein_coding Interval_126384 chr5 87757109 87757366 + 0 NA Intergenic Intergenic 7564 ENSMUSG00000095333.1 ENSMUSG00000095333 ENSMUST00000158274 Gm24314 snoRNA Interval_144667 chr7 27418054 27418371 + 0 NA intron (ENSMUSG00000011751.16, intron 10 of 35) protein_coding-intron (ENSMUSG00000011751.16, intron 10 of 35) -14924 ENSMUSG00000108416.1 ENSMUSG00000108416 ENSMUST00000138087 Gm44924 processed_transcript Interval_67724 chr16 56371150 56371325 + 0 NA Intergenic Intergenic -33859 ENSMUSG00000116998.1 ENSMUSG00000116998 ENSMUST00000231232 Gm21050 processed_pseudogene Interval_127179 chr5 100860765 100862021 + 0 NA intron (ENSMUSG00000029314.14, intron 4 of 13) protein_coding-intron (ENSMUSG00000029314.14, intron 3 of 12) -14226 ENSMUSG00000087611.1 ENSMUSG00000087611 ENSMUST00000142871 4930458D05Rik antisense Interval_87498 chr19 53063994 53065210 + 0 NA intron (ENSMUSG00000099988.7, intron 1 of 2) processed_transcript-intron (ENSMUSG00000099988.7, intron 1 of 2) -11641 ENSMUSG00000099988.7 ENSMUSG00000099988 ENSMUST00000236249 1700054A03Rik processed_transcript Interval_86565 chr19 41737631 41738640 + 0 NA intron (ENSMUSG00000025020.11, intron 1 of 11) protein_coding-intron (ENSMUSG00000025020.11, intron 1 of 36) 5351 ENSMUSG00000025020.11 ENSMUSG00000025020 ENSMUST00000171586 Slit1 protein_coding Interval_124822 chr5 55677710 55678492 + 0 NA Intergenic Intergenic 25152 ENSMUSG00000105186.1 ENSMUSG00000105186 ENSMUST00000199438 Gm43778 TEC Interval_135424 chr6 39300523 39300867 + 0 NA Intergenic Intergenic -34753 ENSMUSG00000089422.1 ENSMUSG00000089422 ENSMUST00000158797 Gm26008 snRNA Interval_128243 chr5 111986664 111987400 + 0 NA Intergenic Intergenic -42797 ENSMUSG00000106060.1 ENSMUSG00000106060 ENSMUST00000197648 Gm42488 lincRNA Interval_128649 chr5 114501076 114501503 + 0 NA Intergenic Intergenic 48869 ENSMUSG00000041939.14 ENSMUSG00000041939 ENSMUST00000139420 Mvk protein_coding Interval_122780 chr5 25390497 25391090 + 0 NA promoter-TSS (ENSMUSG00000092344.1) processed_pseudogene-promoter-TSS (ENSMUSG00000092344.1) -815 ENSMUSG00000092344.1 ENSMUSG00000092344 ENSMUST00000172726 Hspe1-ps3 processed_pseudogene Interval_131850 chr5 140360164 140360940 + 0 NA promoter-TSS (ENSMUSG00000029560.12) protein_coding-promoter-TSS (ENSMUSG00000029560.12) 6558 ENSMUSG00000029560.12 ENSMUSG00000029560 ENSMUST00000196020 Snx8 protein_coding Interval_94099 chr2 84016738 84016955 + 0 NA Intergenic Intergenic 17767 ENSMUSG00000084359.1 ENSMUSG00000084359 ENSMUST00000120774 Gm13692 processed_pseudogene Interval_158781 chr8 86392956 86394767 + 0 NA Intergenic Intergenic 101360 ENSMUSG00000065737.1 ENSMUSG00000065737 ENSMUST00000083803 Gm24490 snRNA Interval_172577 chrX 36988515 36990231 + 0 NA intron (ENSMUSG00000050379.15, intron 2 of 3) protein_coding-intron (ENSMUSG00000050379.15, intron 1 of 10) 2421 ENSMUSG00000050379.15 ENSMUSG00000050379 ENSMUST00000128766 Septin6 protein_coding Interval_285 KZ289085.1 85495 86000 + 0 NA NA NA NA NA Interval_129978 chr5 123436608 123437660 + 0 NA intron (ENSMUSG00000038342.15, intron 1 of 8) protein_coding-intron (ENSMUSG00000038342.15, intron 1 of 16) -14324 ENSMUSG00000038342.15 ENSMUSG00000038342 ENSMUST00000199458 Mlxip protein_coding Interval_31735 chr11 102538683 102540740 + 0 NA intron (ENSMUSG00000034621.14, intron 1 of 7) protein_coding-intron (ENSMUSG00000034621.14, intron 1 of 1) -5991 ENSMUSG00000081677.1 ENSMUSG00000081677 ENSMUST00000119782 Mdk-ps1 processed_pseudogene Interval_61252 chr15 80229563 80230812 + 0 NA promoter-TSS (ENSMUSG00000116127.1) processed_pseudogene-promoter-TSS (ENSMUSG00000116127.1) -264 ENSMUSG00000116127.1 ENSMUSG00000116127 ENSMUST00000229937 Gm8375 processed_pseudogene Interval_130697 chr5 129862262 129863017 + 0 NA TTS (ENSMUSG00000025537.12) protein_coding-TTS (ENSMUSG00000025537.12) 14308 ENSMUSG00000106840.1 ENSMUSG00000106840 ENSMUST00000201268 Gm42790 TEC Interval_168136 chr9 77455564 77457091 + 0 NA intron (ENSMUSG00000032352.16, intron 7 of 13) protein_coding-intron (ENSMUSG00000032352.16, intron 7 of 13) -56909 ENSMUSG00000099170.1 ENSMUSG00000099170 ENSMUST00000183878 5730403I07Rik lincRNA Interval_49320 chr13 110725632 110726299 + 0 NA Intergenic Intergenic 42053 ENSMUSG00000114775.1 ENSMUSG00000114775 ENSMUST00000225669 Gm33172 lincRNA Interval_174093 chrX 134647820 134648463 + 0 NA Intergenic Intergenic -22397 ENSMUSG00000085226.1 ENSMUSG00000085226 ENSMUST00000137737 Gm7855 processed_pseudogene Interval_156613 chr8 54616141 54617506 + 0 NA Intergenic Intergenic -15836 ENSMUSG00000089708.1 ENSMUSG00000089708 ENSMUST00000162770 5330439A09Rik antisense Interval_144332 chr7 24524869 24525403 + 0 NA Intergenic Intergenic 4706 ENSMUSG00000118544.1 ENSMUSG00000118544 ENSMUST00000238918 AC161166.1 unitary_pseudogene Interval_9947 chr1 164316664 164317053 + 0 NA intron (ENSMUSG00000026575.15, intron 4 of 15) protein_coding-intron (ENSMUSG00000026575.15, intron 1 of 7) 9131 ENSMUSG00000026575.15 ENSMUSG00000026575 ENSMUST00000192710 Nme7 protein_coding Interval_73102 chr17 34813502 34814920 + 0 NA exon (ENSMUSG00000015451.16, exon 29 of 42) processed_transcript-exon (ENSMUSG00000015451.16, exon 29 of 42) -2818 ENSMUSG00000015451.16 ENSMUSG00000015451 ENSMUST00000160309 C4a processed_transcript Interval_68995 chr16 90005063 90005445 + 0 NA intron (ENSMUSG00000002489.16, intron 2 of 11) protein_coding-intron (ENSMUSG00000002489.16, intron 2 of 11) -84729 ENSMUSG00000116536.1 ENSMUSG00000116536 ENSMUST00000232386 Gm2805 processed_pseudogene Interval_44403 chr13 44650990 44652038 + 0 NA Intergenic Intergenic 29332 ENSMUSG00000113730.1 ENSMUSG00000113730 ENSMUST00000221956 Gm47805 lincRNA Interval_107529 chr3 108320460 108320817 + 0 NA intron (ENSMUSG00000068747.14, intron 3 of 20) protein_coding-intron (ENSMUSG00000068747.14, intron 3 of 19) 32757 ENSMUSG00000105358.1 ENSMUSG00000105358 ENSMUST00000198943 Gm43099 TEC Interval_46888 chr13 73183600 73184547 + 0 NA Intergenic Intergenic -49322 ENSMUSG00000113952.1 ENSMUSG00000113952 ENSMUST00000223231 Rpl31-ps2 processed_pseudogene Interval_151078 chr7 118364310 118365304 + 0 NA intron (ENSMUSG00000118412.1, intron 1 of 4) unitary_pseudogene-intron (ENSMUSG00000118412.1, intron 1 of 4) 4910 ENSMUSG00000118412.1 ENSMUSG00000118412 ENSMUST00000238497 Gm32766 unitary_pseudogene Interval_112735 chr4 44497803 44498231 + 0 NA Intergenic Intergenic -85422 ENSMUSG00000077587.1 ENSMUSG00000077587 ENSMUST00000104399 Gm24376 snoRNA Interval_126805 chr5 93054145 93054829 + 0 NA Intergenic Intergenic -9465 ENSMUSG00000045314.5 ENSMUSG00000045314 ENSMUST00000061328 Sowahb protein_coding Interval_150439 chr7 110645033 110645988 + 0 NA Intergenic Intergenic -6152 ENSMUSG00000099803.1 ENSMUSG00000099803 ENSMUST00000186888 Gm28863 antisense Interval_21477 chr10 128833453 128834187 + 0 NA intron (ENSMUSG00000078427.3, intron 2 of 11) protein_coding-intron (ENSMUSG00000078427.3, intron 2 of 10) 11888 ENSMUSG00000078427.3 ENSMUSG00000078427 ENSMUST00000220381 Sarnp protein_coding Interval_133014 chr5 149277014 149279643 + 0 NA promoter-TSS (ENSMUSG00000060063.9) protein_coding-promoter-TSS (ENSMUSG00000060063.9) 2895 ENSMUSG00000064704.1 ENSMUSG00000064704 ENSMUST00000082770 n-R5s180 rRNA Interval_35202 chr12 18069367 18069782 + 0 NA Intergenic Intergenic 7607 ENSMUSG00000113642.1 ENSMUSG00000113642 ENSMUST00000222523 Gm49329 transcribed_unprocessed_pseudogene Interval_27687 chr11 69487081 69488076 + 0 NA intron (ENSMUSG00000005237.14, intron 22 of 85) protein_coding-intron (ENSMUSG00000005237.14, intron 21 of 84) 17857 ENSMUSG00000098432.1 ENSMUSG00000098432 ENSMUST00000184128 Gm27493 miRNA Interval_70163 chr17 5893196 5893941 + 0 NA intron (ENSMUSG00000002365.10, intron 4 of 17) protein_coding-intron (ENSMUSG00000002365.10, intron 4 of 17) -45519 ENSMUSG00000116734.1 ENSMUSG00000116734 ENSMUST00000231634 Gm8376 processed_pseudogene Interval_88709 chr2 9915442 9915689 + 0 NA TTS (ENSMUSG00000025782.12) protein_coding-TTS (ENSMUSG00000025782.12) 9387 ENSMUSG00000075534.5 ENSMUSG00000075534 ENSMUST00000149014 Gm13262 antisense Interval_90723 chr2 32132363 32133142 + 0 NA Intergenic Intergenic 36597 ENSMUSG00000051373.5 ENSMUSG00000051373 ENSMUST00000146502 Plpp7 protein_coding Interval_19658 chr10 107437291 107437579 + 0 NA promoter-TSS (ENSMUSG00000102934.1) TEC-promoter-TSS (ENSMUSG00000102934.1) -76 ENSMUSG00000102934.1 ENSMUSG00000102934 ENSMUST00000194653 Gm38117 TEC Interval_98041 chr2 147064613 147064933 + 0 NA intron (ENSMUSG00000027433.5, intron 2 of 2) protein_coding-intron (ENSMUSG00000027433.5, intron 27 of 29) 20672 ENSMUSG00000054160.2 ENSMUSG00000054160 ENSMUST00000067020 Nkx2-4 protein_coding Interval_156757 chr8 58005832 58007023 + 0 NA intron (ENSMUSG00000096914.3, intron 5 of 12) protein_coding-intron (ENSMUSG00000096914.3, intron 5 of 12) 114684 ENSMUSG00000109753.1 ENSMUSG00000109753 ENSMUST00000210669 Gm45633 TEC Interval_42844 chr13 20292221 20292608 + 0 NA intron (ENSMUSG00000041112.17, intron 5 of 6) protein_coding-intron (ENSMUSG00000041112.17, intron 13 of 21) 9497 ENSMUSG00000041112.17 ENSMUSG00000041112 ENSMUST00000180767 Elmo1 protein_coding Interval_35772 chr12 29177143 29177620 + 0 NA intron (ENSMUSG00000113986.1, intron 6 of 7) lincRNA-intron (ENSMUSG00000113986.1, intron 6 of 7) 35452 ENSMUSG00000113986.1 ENSMUSG00000113986 ENSMUST00000222225 Gm31333 lincRNA Interval_111296 chr4 17690097 17690554 + 0 NA Intergenic Intergenic -32362 ENSMUSG00000085478.1 ENSMUSG00000085478 ENSMUST00000132219 Gm11851 lincRNA Interval_138390 chr6 87810920 87812546 + 0 NA promoter-TSS (ENSMUSG00000030055.16) protein_coding-promoter-TSS (ENSMUSG00000030055.16) -5397 ENSMUSG00000108120.1 ENSMUSG00000108120 ENSMUST00000203027 9930120I10Rik TEC Interval_11333 chr1 181009945 181010916 + 0 NA intron (ENSMUSG00000038776.13, intron 1 of 3) protein_coding-intron (ENSMUSG00000038776.13, intron 1 of 8) 12343 ENSMUSG00000103516.1 ENSMUSG00000103516 ENSMUST00000195102 Gm37431 unprocessed_pseudogene Interval_37627 chr12 70539851 70540673 + 0 NA intron (ENSMUSG00000113302.1, intron 2 of 4) lincRNA-intron (ENSMUSG00000113302.1, intron 2 of 4) 17664 ENSMUSG00000113302.1 ENSMUSG00000113302 ENSMUST00000221234 Gm32219 lincRNA Interval_127926 chr5 109166800 109167706 + 0 NA intron (ENSMUSG00000091635.2, intron 4 of 5) protein_coding-intron (ENSMUSG00000091635.2, intron 4 of 5) 24946 ENSMUSG00000091635.2 ENSMUSG00000091635 ENSMUST00000053253 Vmn2r13 protein_coding Interval_22271 chr11 8456486 8456703 + 0 NA intron (ENSMUSG00000020422.14, intron 20 of 30) protein_coding-intron (ENSMUSG00000020422.14, intron 20 of 30) -72741 ENSMUSG00000083553.1 ENSMUSG00000083553 ENSMUST00000117240 Gm11989 processed_pseudogene Interval_92331 chr2 58879575 58880598 + 0 NA intron (ENSMUSG00000079353.2, intron 1 of 1) protein_coding-intron (ENSMUSG00000036641.9, intron 12 of 14) -13954 ENSMUSG00000082800.1 ENSMUSG00000082800 ENSMUST00000121865 Gm13560 processed_pseudogene Interval_38028 chr12 74160546 74161293 + 0 NA intron (ENSMUSG00000044912.11, intron 3 of 3) protein_coding-intron (ENSMUSG00000044912.11, intron 2 of 7) -1298 ENSMUSG00000044912.11 ENSMUSG00000044912 ENSMUST00000238790 Syt16 protein_coding Interval_79927 chr18 35981208 35981437 + 0 NA intron (ENSMUSG00000024347.16, intron 4 of 14) protein_coding-intron (ENSMUSG00000024347.16, intron 4 of 14) 16255 ENSMUSG00000024347.16 ENSMUSG00000024347 ENSMUST00000175720 Psd2 protein_coding Interval_99989 chr2 166266451 166267658 + 0 NA Intergenic Intergenic -6854 ENSMUSG00000084840.1 ENSMUSG00000084840 ENSMUST00000152987 Gm11468 lincRNA Interval_104963 chr3 79302736 79302952 + 0 NA Intergenic Intergenic 15452 ENSMUSG00000102545.1 ENSMUSG00000102545 ENSMUST00000192562 6430573P05Rik lincRNA Interval_132730 chr5 147429703 147431708 + 0 NA promoter-TSS (ENSMUSG00000029647.15) protein_coding-promoter-TSS (ENSMUSG00000029647.15) -191 ENSMUSG00000029647.15 ENSMUSG00000029647 ENSMUST00000176553 Pan3 protein_coding Interval_121255 chr4 154438177 154439632 + 0 NA intron (ENSMUSG00000039410.16, intron 3 of 15) protein_coding-intron (ENSMUSG00000039410.16, intron 3 of 16) 102777 ENSMUSG00000097871.1 ENSMUSG00000097871 ENSMUST00000181143 B230104I21Rik lincRNA Interval_157821 chr8 74290322 74290535 + 0 NA Intergenic Intergenic 20181 ENSMUSG00000098378.1 ENSMUSG00000098378 ENSMUST00000183704 Gm27864 miRNA Interval_57612 chr15 12818695 12818914 + 0 NA promoter-TSS (ENSMUSG00000022195.7) protein_coding-promoter-TSS (ENSMUSG00000022195.7) 5837 ENSMUSG00000022195.7 ENSMUSG00000022195 ENSMUST00000228888 6030458C11Rik protein_coding Interval_65718 chr16 25953362 25953680 + 0 NA Intergenic Intergenic -2954 ENSMUSG00000090257.1 ENSMUSG00000090257 ENSMUST00000161614 Gm4524 antisense Interval_6689 chr1 118768130 118769320 + 0 NA Intergenic Intergenic -41411 ENSMUSG00000100040.1 ENSMUSG00000100040 ENSMUST00000190981 Gm28467 processed_pseudogene Interval_65194 chr16 20453979 20454939 + 0 NA Intergenic Intergenic 8806 ENSMUSG00000088049.1 ENSMUSG00000088049 ENSMUST00000157424 Gm23332 misc_RNA Interval_126341 chr5 86829125 86829343 + 0 NA promoter-TSS (ENSMUSG00000035851.14) protein_coding-promoter-TSS (ENSMUSG00000035851.14) 22823 ENSMUSG00000035851.14 ENSMUSG00000035851 ENSMUST00000123625 Ythdc1 protein_coding Interval_124570 chr5 51365585 51365867 + 0 NA Intergenic Intergenic 118579 ENSMUSG00000105442.1 ENSMUSG00000105442 ENSMUST00000198724 Gm42614 TEC Interval_128475 chr5 113536511 113538869 + 0 NA intron (ENSMUSG00000063430.9, intron 1 of 1) protein_coding-intron (ENSMUSG00000063430.9, intron 1 of 8) -41098 ENSMUSG00000063430.9 ENSMUSG00000063430 ENSMUST00000198673 Wscd2 protein_coding Interval_10313 chr1 168416392 168417814 + 0 NA intron (ENSMUSG00000052534.15, intron 2 of 7) protein_coding-intron (ENSMUSG00000052534.15, intron 2 of 6) 15167 ENSMUSG00000052534.15 ENSMUSG00000052534 ENSMUST00000176791 Pbx1 protein_coding Interval_145016 chr7 29445425 29446942 + 0 NA intron (ENSMUSG00000030583.16, intron 1 of 2) protein_coding-intron (ENSMUSG00000030583.16, intron 2 of 22) -68578 ENSMUSG00000030583.16 ENSMUSG00000030583 ENSMUST00000183085 Sipa1l3 protein_coding Interval_26259 chr11 55483377 55484155 + 0 NA TTS (ENSMUSG00000065061.1) snoRNA-TTS (ENSMUSG00000065061.1) 1060 ENSMUSG00000087342.1 ENSMUSG00000087342 ENSMUST00000127764 Gm12238 sense_intronic Interval_19535 chr10 102451459 102452236 + 0 NA Intergenic Intergenic -8351 ENSMUSG00000098139.1 ENSMUSG00000098139 ENSMUST00000183296 Gm26988 processed_pseudogene Interval_28934 chr11 79363445 79365525 + 0 NA intron (ENSMUSG00000020716.16, intron 1 of 30) protein_coding-intron (ENSMUSG00000020716.16, intron 1 of 57) 7745 ENSMUSG00000082304.1 ENSMUSG00000082304 ENSMUST00000119771 Gm11198 processed_pseudogene Interval_43269 chr13 28409481 28409789 + 0 NA intron (ENSMUSG00000113216.1, intron 2 of 3) lincRNA-intron (ENSMUSG00000113216.1, intron 2 of 3) 10228 ENSMUSG00000113216.1 ENSMUSG00000113216 ENSMUST00000221933 Gm40841 lincRNA Interval_150143 chr7 107355657 107356016 + 0 NA Intergenic Intergenic -10236 ENSMUSG00000109078.1 ENSMUSG00000109078 ENSMUST00000208516 Gm19033 processed_pseudogene Interval_60896 chr15 77691091 77692124 + 0 NA Intergenic Intergenic -7250 ENSMUSG00000071716.5 ENSMUSG00000071716 ENSMUST00000096358 Apol7e protein_coding Interval_141710 chr6 133937285 133938396 + 0 NA Intergenic Intergenic -5431 ENSMUSG00000107771.1 ENSMUSG00000107771 ENSMUST00000203939 Gm8956 processed_pseudogene Interval_59111 chr15 44189660 44189872 + 0 NA Intergenic Intergenic -7201 ENSMUSG00000038760.14 ENSMUSG00000038760 ENSMUST00000227505 Trhr protein_coding Interval_35627 chr12 26122753 26123134 + 0 NA intron (ENSMUSG00000113550.1, intron 3 of 4) lincRNA-intron (ENSMUSG00000113550.1, intron 3 of 4) -27373 ENSMUSG00000113611.1 ENSMUSG00000113611 ENSMUST00000220612 Gm47750 processed_pseudogene Interval_58003 chr15 25946698 25947559 + 0 NA intron (ENSMUSG00000022270.16, intron 1 of 6) protein_coding-intron (ENSMUSG00000022270.16, intron 3 of 8) -1099 ENSMUSG00000098719.1 ENSMUSG00000098719 ENSMUST00000184098 Mir7212 miRNA Interval_68806 chr16 87127886 87129270 + 0 NA promoter-TSS (ENSMUSG00000116979.1) lincRNA-promoter-TSS (ENSMUSG00000116979.1) -139 ENSMUSG00000116979.1 ENSMUSG00000116979 ENSMUST00000232056 Gm32865 lincRNA Interval_25053 chr11 43531539 43531857 + 0 NA intron (ENSMUSG00000044707.7, intron 1 of 1) protein_coding-intron (ENSMUSG00000044707.7, intron 2 of 5) 2452 ENSMUSG00000044707.7 ENSMUSG00000044707 ENSMUST00000152153 Ccnjl protein_coding Interval_137896 chr6 83188647 83188845 + 0 NA exon (ENSMUSG00000031865.16, exon 1 of 2) protein_coding-exon (ENSMUSG00000031865.16, exon 1 of 2) -5797 ENSMUSG00000031865.16 ENSMUSG00000031865 ENSMUST00000153793 Dctn1 protein_coding Interval_12923 chr10 8196055 8196875 + 0 NA Intergenic Intergenic 20334 ENSMUSG00000112109.1 ENSMUSG00000112109 ENSMUST00000219578 Gm30906 lincRNA Interval_3928 chr1 64877849 64878069 + 0 NA intron (ENSMUSG00000051344.13, intron 4 of 4) protein_coding-intron (ENSMUSG00000051344.13, intron 5 of 7) -41195 ENSMUSG00000051344.13 ENSMUSG00000051344 ENSMUST00000134097 Plekhm3 protein_coding Interval_49908 chr13 118157371 118157688 + 0 NA Intergenic Intergenic 110209 ENSMUSG00000114713.1 ENSMUSG00000114713 ENSMUST00000225643 Gm9633 processed_pseudogene Interval_72320 chr17 29187071 29187806 + 0 NA intron (ENSMUSG00000024008.16, intron 10 of 13) protein_coding-intron (ENSMUSG00000024008.16, intron 9 of 20) -27933 ENSMUSG00000024008.16 ENSMUSG00000024008 ENSMUST00000126755 Cpne5 protein_coding Interval_163626 chr9 22731614 22733646 + 0 NA intron (ENSMUSG00000035919.16, intron 19 of 22) protein_coding-intron (ENSMUSG00000035919.16, intron 18 of 21) 40205 ENSMUSG00000098940.1 ENSMUSG00000098940 ENSMUST00000184937 Gm27639 snRNA Interval_33607 chr11 117469489 117469814 + 0 NA Intergenic Intergenic 12946 ENSMUSG00000110653.1 ENSMUSG00000110653 ENSMUST00000212879 Gm34418 lincRNA Interval_296 KZ289091.1 261173 264599 + 0 NA NA NA NA NA Interval_120846 chr4 150995108 150995509 + 0 NA intron (ENSMUSG00000014592.21, intron 24 of 24) protein_coding-intron (ENSMUSG00000014592.21, intron 24 of 24) -1789 ENSMUSG00000028963.1 ENSMUSG00000028963 ENSMUST00000030803 Uts2 protein_coding Interval_43564 chr13 33570571 33571374 + 0 NA intron (ENSMUSG00000113016.1, intron 2 of 2) lincRNA-intron (ENSMUSG00000113016.1, intron 2 of 2) -1655 ENSMUSG00000112963.1 ENSMUSG00000112963 ENSMUST00000221792 Gm6093 lincRNA Interval_54072 chr14 65004485 65004925 + 0 NA intron (ENSMUSG00000021975.9, intron 6 of 16) protein_coding-intron (ENSMUSG00000021975.9, intron 6 of 16) 54660 ENSMUSG00000021975.9 ENSMUSG00000021975 ENSMUST00000225790 Ints9 protein_coding Interval_151847 chr7 127088902 127089388 + 0 NA Intergenic Intergenic -1859 ENSMUSG00000049350.6 ENSMUSG00000049350 ENSMUST00000205623 Zg16 protein_coding Interval_137941 chr6 83563261 83563823 + 0 NA intron (ENSMUSG00000006906.10, intron 4 of 9) protein_coding-intron (ENSMUSG00000006906.10, intron 4 of 9) -4497 ENSMUSG00000108660.1 ENSMUSG00000108660 ENSMUST00000205532 Gm21284 antisense Interval_11052 chr1 178937587 178938287 + 0 NA exon (ENSMUSG00000026494.12, exon 15 of 15) protein_coding-exon (ENSMUSG00000026494.12, exon 15 of 15) -20323 ENSMUSG00000089713.1 ENSMUSG00000089713 ENSMUST00000162545 Gm16564 antisense Interval_161332 chr8 119794613 119794829 + 0 NA Intergenic Intergenic -16327 ENSMUSG00000034105.9 ENSMUSG00000034105 ENSMUST00000212534 Meak7 protein_coding Interval_75346 chr17 66043617 66044124 + 0 NA intron (ENSMUSG00000034647.15, intron 3 of 4) protein_coding-intron (ENSMUSG00000034647.15, intron 3 of 12) 38165 ENSMUSG00000117074.1 ENSMUSG00000117074 ENSMUST00000233477 Gm49925 processed_pseudogene Interval_93049 chr2 69810250 69810466 + 0 NA Intergenic Intergenic -10746 ENSMUSG00000081857.1 ENSMUSG00000081857 ENSMUST00000120263 Gm13624 processed_pseudogene Interval_122797 chr5 25597601 25598598 + 0 NA Intergenic Intergenic -61710 ENSMUSG00000106144.1 ENSMUSG00000106144 ENSMUST00000181398 Gm43972 lincRNA Interval_121443 chr4 155830945 155832232 + 0 NA promoter-TSS (ENSMUSG00000065990.12) protein_coding-promoter-TSS (ENSMUSG00000065990.12) -31 ENSMUSG00000065990.12 ENSMUSG00000065990 ENSMUST00000105591 Aurkaip1 protein_coding Interval_162299 chr8 126874196 126874487 + 0 NA intron (ENSMUSG00000110697.1, intron 1 of 4) lincRNA-intron (ENSMUSG00000110697.1, intron 1 of 8) 33874 ENSMUSG00000110697.1 ENSMUSG00000110697 ENSMUST00000212639 Gm31718 lincRNA Interval_64818 chr16 16136942 16137771 + 0 NA intron (ENSMUSG00000041974.10, intron 3 of 16) protein_coding-intron (ENSMUSG00000041974.10, intron 3 of 19) 9448 ENSMUSG00000041974.10 ENSMUSG00000041974 ENSMUST00000229846 Spidr protein_coding Interval_36980 chr12 55866896 55867099 + 0 NA intron (ENSMUSG00000012076.8, intron 7 of 8) protein_coding-intron (ENSMUSG00000012076.8, intron 9 of 9) 30593 ENSMUSG00000012076.8 ENSMUSG00000012076 ENSMUST00000219575 Brms1l protein_coding Interval_64916 chr16 17189568 17191019 + 0 NA intron (ENSMUSG00000038965.17, intron 1 of 4) protein_coding-intron (ENSMUSG00000038965.17, intron 1 of 3) 11166 ENSMUSG00000038965.17 ENSMUSG00000038965 ENSMUST00000231557 Ube2l3 protein_coding Interval_68740 chr16 85324743 85324970 + 0 NA Intergenic Intergenic 156007 ENSMUSG00000098604.1 ENSMUSG00000098604 ENSMUST00000184264 Gm27295 snoRNA Interval_64088 chr16 7685375 7685815 + 0 NA Intergenic Intergenic 23471 ENSMUSG00000115989.1 ENSMUSG00000115989 ENSMUST00000229672 Gm49533 processed_pseudogene Interval_167173 chr9 65855362 65855675 + 0 NA intron (ENSMUSG00000032386.15, intron 12 of 14) protein_coding-intron (ENSMUSG00000032386.15, intron 9 of 12) 17351 ENSMUSG00000079915.2 ENSMUSG00000079915 ENSMUST00000116032 Gm16073 processed_pseudogene Interval_81873 chr18 65546133 65546941 + 0 NA TTS (ENSMUSG00000118179.1) processed_pseudogene-TTS (ENSMUSG00000118179.1) 429 ENSMUSG00000118179.1 ENSMUSG00000118179 ENSMUST00000237213 Gm50247 processed_pseudogene Interval_9411 chr1 156914805 156915041 + 0 NA intron (ENSMUSG00000026594.14, intron 1 of 19) protein_coding-intron (ENSMUSG00000026594.14, intron 1 of 18) 24676 ENSMUSG00000026594.14 ENSMUSG00000026594 ENSMUST00000189648 Ralgps2 protein_coding Interval_3002 chr1 52049582 52050341 + 0 NA intron (ENSMUSG00000062939.11, intron 2 of 4) protein_coding-intron (ENSMUSG00000062939.11, intron 3 of 23) -27300 ENSMUSG00000101628.1 ENSMUSG00000101628 ENSMUST00000185516 Gm28177 processed_transcript Interval_15246 chr10 43695690 43695890 + 0 NA intron (ENSMUSG00000075184.3, intron 3 of 4) lincRNA-intron (ENSMUSG00000075184.3, intron 3 of 4) -3962 ENSMUSG00000111575.1 ENSMUSG00000111575 ENSMUST00000214822 Gm47926 lincRNA Interval_128896 chr5 115938525 115939245 + 0 NA intron (ENSMUSG00000029516.19, intron 8 of 37) protein_coding-intron (ENSMUSG00000029516.19, intron 17 of 46) 36455 ENSMUSG00000107263.1 ENSMUSG00000107263 ENSMUST00000201457 Gm42471 TEC Interval_51246 chr14 25519731 25520088 + 0 NA intron (ENSMUSG00000007817.15, intron 2 of 23) protein_coding-intron (ENSMUSG00000007817.15, intron 2 of 23) -14530 ENSMUSG00000093081.1 ENSMUSG00000093081 ENSMUST00000175340 Mir3075 miRNA Interval_161410 chr8 120307052 120307367 + 0 NA intron (ENSMUSG00000031822.20, intron 1 of 2) protein_coding-intron (ENSMUSG00000092329.1, intron 1 of 15) -78979 ENSMUSG00000097960.1 ENSMUSG00000097960 ENSMUST00000183235 A330074K22Rik lincRNA Interval_24628 chr11 35417207 35419452 + 0 NA intron (ENSMUSG00000056427.10, intron 2 of 3) protein_coding-intron (ENSMUSG00000056427.10, intron 4 of 35) 68260 ENSMUSG00000086311.1 ENSMUSG00000086311 ENSMUST00000124503 Gm12122 sense_intronic Interval_88605 chr2 6594163 6594440 + 0 NA intron (ENSMUSG00000002107.18, intron 8 of 13) protein_coding-intron (ENSMUSG00000002107.18, intron 10 of 15) 114611 ENSMUSG00000102599.1 ENSMUSG00000102599 ENSMUST00000194293 Gm38386 TEC Interval_119158 chr4 135898311 135899916 + 0 NA intron (ENSMUSG00000062585.11, intron 1 of 1) protein_coding-intron (ENSMUSG00000062585.11, intron 1 of 1) 3719 ENSMUSG00000062585.11 ENSMUSG00000062585 ENSMUST00000068830 Cnr2 protein_coding Interval_2065 chr1 36212933 36213677 + 0 NA intron (ENSMUSG00000037470.14, intron 6 of 18) protein_coding-intron (ENSMUSG00000037470.14, intron 6 of 40) 31415 ENSMUSG00000037470.14 ENSMUSG00000037470 ENSMUST00000192159 Uggt1 protein_coding Interval_17179 chr10 74158526 74159110 + 0 NA intron (ENSMUSG00000052613.16, intron 2 of 34) protein_coding-intron (ENSMUSG00000052613.16, intron 3 of 30) 211762 ENSMUSG00000052613.16 ENSMUSG00000052613 ENSMUST00000192370 Pcdh15 protein_coding Interval_49228 chr13 109662552 109662956 + 0 NA intron (ENSMUSG00000021699.17, intron 1 of 14) protein_coding-intron (ENSMUSG00000021699.17, intron 1 of 14) -241055 ENSMUSG00000084651.1 ENSMUSG00000084651 ENSMUST00000122702 Mir1904 miRNA Interval_108822 chr3 131964867 131965073 + 0 NA intron (ENSMUSG00000105331.1, intron 1 of 3) lincRNA-intron (ENSMUSG00000105331.1, intron 1 of 3) 46711 ENSMUSG00000087877.1 ENSMUSG00000087877 ENSMUST00000157252 Gm26103 snRNA Interval_17545 chr10 77641803 77642113 + 0 NA TTS (ENSMUSG00000089424.1) miRNA-TTS (ENSMUSG00000089424.1) 734 ENSMUSG00000089424.1 ENSMUSG00000089424 ENSMUST00000158799 Mir1930 miRNA Interval_157703 chr8 72400449 72401225 + 0 NA intron (ENSMUSG00000006276.10, intron 1 of 21) protein_coding-intron (ENSMUSG00000006276.10, intron 1 of 23) 20601 ENSMUSG00000006276.10 ENSMUSG00000006276 ENSMUST00000211977 Eps15l1 protein_coding Interval_62465 chr15 93222650 93222927 + 0 NA Intergenic Intergenic -11575 ENSMUSG00000065911.1 ENSMUSG00000065911 ENSMUST00000083977 Gm24447 misc_RNA Interval_110259 chr3 155047198 155048056 + 0 NA intron (ENSMUSG00000040086.13, intron 2 of 4) protein_coding-intron (ENSMUSG00000040086.13, intron 2 of 24) 7723 ENSMUSG00000040086.13 ENSMUSG00000040086 ENSMUST00000146952 Tnni3k protein_coding Interval_128149 chr5 111311870 111312112 + 0 NA Intergenic Intergenic 18553 ENSMUSG00000106374.1 ENSMUSG00000106374 ENSMUST00000199221 Gm27680 TEC Interval_46417 chr13 65007374 65008149 + 0 NA Intergenic Intergenic 8827 ENSMUSG00000113807.1 ENSMUSG00000113807 ENSMUST00000221983 Gm6888 processed_pseudogene Interval_160400 chr8 108955480 108956975 + 0 NA exon (ENSMUSG00000038872.10, exon 10 of 10) protein_coding-exon (ENSMUSG00000038872.10, exon 10 of 10) 19367 ENSMUSG00000093241.1 ENSMUSG00000093241 ENSMUST00000175500 Mir3108 miRNA Interval_57531 chr15 12127201 12127383 + 0 NA intron (ENSMUSG00000022201.16, intron 2 of 4) protein_coding-intron (ENSMUSG00000022201.16, intron 2 of 19) 9441 ENSMUSG00000022201.16 ENSMUSG00000022201 ENSMUST00000140787 Zfr protein_coding Interval_125330 chr5 66226625 66227076 + 0 NA Intergenic Intergenic 12103 ENSMUSG00000107125.1 ENSMUSG00000107125 ENSMUST00000201941 Gm3822 TEC Interval_91718 chr2 48785905 48786414 + 0 NA Intergenic Intergenic 24396 ENSMUSG00000082114.2 ENSMUSG00000082114 ENSMUST00000121234 Gm13489 processed_pseudogene Interval_78435 chr18 12845306 12846153 + 0 NA intron (ENSMUSG00000044252.18, intron 3 of 7) protein_coding-intron (ENSMUSG00000044252.18, intron 15 of 27) 15476 ENSMUSG00000044252.18 ENSMUSG00000044252 ENSMUST00000142467 Osbpl1a protein_coding Interval_155842 chr8 40132887 40134041 + 0 NA Intergenic Intergenic 116750 ENSMUSG00000109815.1 ENSMUSG00000109815 ENSMUST00000209880 Gm7082 processed_pseudogene Interval_107777 chr3 113937542 113937747 + 0 NA Intergenic Intergenic 82908 ENSMUSG00000106084.1 ENSMUSG00000106084 ENSMUST00000197877 Gm18163 processed_pseudogene Interval_14605 chr10 36928882 36929364 + 0 NA Intergenic Intergenic -62643 ENSMUSG00000019777.16 ENSMUSG00000019777 ENSMUST00000123010 Hdac2 protein_coding Interval_107456 chr3 107829648 107830127 + 0 NA intron (ENSMUSG00000106426.1, intron 1 of 3) lincRNA-intron (ENSMUSG00000106426.1, intron 1 of 3) 3652 ENSMUSG00000106426.1 ENSMUSG00000106426 ENSMUST00000198171 Gm36211 lincRNA Interval_155138 chr8 26976382 26980080 + 0 NA promoter-TSS (ENSMUSG00000085795.8) protein_coding-promoter-TSS (ENSMUSG00000085795.8) 906 ENSMUSG00000085795.8 ENSMUSG00000085795 ENSMUST00000209411 Zfp703 protein_coding Interval_35118 chr12 17416669 17417411 + 0 NA intron (ENSMUSG00000061458.9, intron 19 of 20) protein_coding-intron (ENSMUSG00000061458.9, intron 19 of 20) -19578 ENSMUSG00000113246.1 ENSMUSG00000113246 ENSMUST00000220527 Gm36752 lincRNA Interval_42613 chr13 16804484 16804716 + 0 NA Intergenic Intergenic 54872 ENSMUSG00000087872.1 ENSMUSG00000087872 ENSMUST00000157247 Gm26098 misc_RNA Interval_146536 chr7 46712446 46712726 + 0 NA TTS (ENSMUSG00000040026.8) protein_coding-TTS (ENSMUSG00000040026.8) 1163 ENSMUSG00000040026.8 ENSMUSG00000040026 ENSMUST00000210913 Saa3 protein_coding Interval_168009 chr9 75382560 75384017 + 0 NA intron (ENSMUSG00000042688.16, intron 2 of 2) protein_coding-intron (ENSMUSG00000042688.16, intron 2 of 2) -7340 ENSMUSG00000111495.1 ENSMUSG00000111495 ENSMUST00000215494 Gm5366 processed_pseudogene Interval_65034 chr16 18608000 18608715 + 0 NA exon (ENSMUSG00000075335.3, exon 2 of 2) lincRNA-exon (ENSMUSG00000075335.3, exon 2 of 2) 13283 ENSMUSG00000050761.4 ENSMUSG00000050761 ENSMUST00000051160 Gp1bb protein_coding Interval_8221 chr1 136579410 136579769 + 0 NA promoter-TSS (ENSMUSG00000104509.1) lincRNA-promoter-TSS (ENSMUSG00000104509.1) -112 ENSMUSG00000104509.1 ENSMUSG00000104509 ENSMUST00000193724 Gm33994 lincRNA Interval_133230 chr5 150728236 150728486 + 0 NA intron (ENSMUSG00000034021.15, intron 6 of 34) protein_coding-intron (ENSMUSG00000034021.15, intron 6 of 34) -17397 ENSMUSG00000077592.1 ENSMUSG00000077592 ENSMUST00000104404 Gm26013 snoRNA Interval_142010 chr6 136531946 136533284 + 0 NA promoter-TSS (ENSMUSG00000030213.12) protein_coding-promoter-TSS (ENSMUSG00000030213.12) -13584 ENSMUSG00000107702.1 ENSMUSG00000107702 ENSMUST00000204157 Gm44140 bidirectional_promoter_lncRNA Interval_100596 chr2 170349778 170350059 + 0 NA promoter-TSS (ENSMUSG00000013523.13) protein_coding-promoter-TSS (ENSMUSG00000013523.13) -178 ENSMUSG00000013523.13 ENSMUSG00000013523 ENSMUST00000145920 Bcas1 protein_coding Interval_113910 chr4 59815361 59815545 + 0 NA intron (ENSMUSG00000028385.14, intron 1 of 8) protein_coding-intron (ENSMUSG00000028385.14, intron 1 of 8) -13864 ENSMUSG00000038544.14 ENSMUSG00000038544 ENSMUST00000138097 Inip protein_coding Interval_86915 chr19 44842101 44843691 + 0 NA Intergenic Intergenic -6958 ENSMUSG00000092369.1 ENSMUSG00000092369 ENSMUST00000174082 1700039E22Rik antisense Interval_37579 chr12 70041997 70043886 + 0 NA exon (ENSMUSG00000021068.17, exon 18 of 30) protein_coding-exon (ENSMUSG00000021068.17, exon 18 of 30) 47676 ENSMUSG00000021068.17 ENSMUSG00000021068 ENSMUST00000239242 Nin protein_coding Interval_150297 chr7 109438307 109439616 + 0 NA promoter-TSS (ENSMUSG00000031027.15) protein_coding-promoter-TSS (ENSMUSG00000031027.15) 120 ENSMUSG00000031027.15 ENSMUSG00000031027 ENSMUST00000121378 Stk33 protein_coding Interval_23517 chr11 23067395 23068430 + 0 NA promoter-TSS (ENSMUSG00000085665.1) processed_transcript-promoter-TSS (ENSMUSG00000085665.1) -86 ENSMUSG00000085665.1 ENSMUSG00000085665 ENSMUST00000128996 Gm12059 processed_transcript Interval_35675 chr12 27338876 27339482 + 0 NA exon (ENSMUSG00000063632.6, exon 1 of 1) protein_coding-exon (ENSMUSG00000063632.6, exon 1 of 1) 3395 ENSMUSG00000063632.6 ENSMUSG00000063632 ENSMUST00000079063 Sox11 protein_coding Interval_103889 chr3 54577454 54577829 + 0 NA Intergenic Intergenic 56927 ENSMUSG00000104831.1 ENSMUSG00000104831 ENSMUST00000197444 B020017C02Rik processed_pseudogene Interval_48144 chr13 96648396 96648802 + 0 NA TTS (ENSMUSG00000021670.14) protein_coding-TTS (ENSMUSG00000021670.14) 17988 ENSMUSG00000021670.14 ENSMUSG00000021670 ENSMUST00000168374 Hmgcr protein_coding Interval_52143 chr14 37097850 37098993 + 0 NA promoter-TSS (ENSMUSG00000021803.10) protein_coding-promoter-TSS (ENSMUSG00000021803.10) -74 ENSMUSG00000021803.10 ENSMUSG00000021803 ENSMUST00000022337 Cdhr1 protein_coding Interval_142769 chr6 145477106 145477318 + 0 NA intron (ENSMUSG00000054966.13, intron 2 of 10) protein_coding-intron (ENSMUSG00000054966.13, intron 2 of 10) 13023 ENSMUSG00000088781.1 ENSMUSG00000088781 ENSMUST00000158156 Gm25373 snoRNA Interval_31329 chr11 100004544 100005198 + 0 NA Intergenic Intergenic 9116 ENSMUSG00000035592.2 ENSMUSG00000035592 ENSMUST00000138756 Krt33a protein_coding Interval_123058 chr5 29314621 29314826 + 0 NA intron (ENSMUSG00000010721.15, intron 4 of 16) protein_coding-intron (ENSMUSG00000010721.15, intron 5 of 16) 22123 ENSMUSG00000093302.1 ENSMUSG00000093302 ENSMUST00000175561 Gm23801 miRNA Interval_125466 chr5 67380634 67380840 + 0 NA Intergenic Intergenic 15232 ENSMUSG00000107266.1 ENSMUSG00000107266 ENSMUST00000202864 Gm43698 lincRNA Interval_162834 chr9 10018879 10019269 + 0 NA intron (ENSMUSG00000039488.15, intron 2 of 18) protein_coding-intron (ENSMUSG00000039488.15, intron 6 of 22) 124643 ENSMUSG00000098408.1 ENSMUSG00000098408 ENSMUST00000183808 Mir6237 miRNA Interval_107392 chr3 107232599 107233975 + 0 NA exon (ENSMUSG00000070368.9, exon 3 of 3) protein_coding-exon (ENSMUSG00000070368.9, exon 3 of 3) 2673 ENSMUSG00000094613.2 ENSMUSG00000094613 ENSMUST00000179399 A630076J17Rik protein_coding Interval_64314 chr16 10417309 10417499 + 0 NA intron (ENSMUSG00000022503.10, intron 2 of 5) protein_coding-intron (ENSMUSG00000022503.10, intron 3 of 10) 5340 ENSMUSG00000022503.10 ENSMUSG00000022503 ENSMUST00000143617 Nubp1 protein_coding Interval_68453 chr16 77028333 77029545 + 0 NA intron (ENSMUSG00000022867.11, intron 1 of 25) protein_coding-intron (ENSMUSG00000022867.11, intron 1 of 23) 15233 ENSMUSG00000022867.11 ENSMUSG00000022867 ENSMUST00000232351 Usp25 protein_coding Interval_20597 chr10 119278760 119280149 + 0 NA Intergenic Intergenic -40780 ENSMUSG00000112155.1 ENSMUSG00000112155 ENSMUST00000218762 4930477N07Rik lincRNA Interval_21514 chr10 129042330 129043021 + 0 NA Intergenic Intergenic -2779 ENSMUSG00000107648.4 ENSMUSG00000107648 ENSMUST00000204763 Olfr764-ps1 protein_coding Interval_124456 chr5 48263413 48263744 + 0 NA TTS (ENSMUSG00000031558.15) protein_coding-TTS (ENSMUSG00000031558.15) -16089 ENSMUSG00000105086.1 ENSMUSG00000105086 ENSMUST00000196063 Gm42534 TEC Interval_141731 chr6 134106736 134108194 + 0 NA intron (ENSMUSG00000030199.16, intron 2 of 8) protein_coding-intron (ENSMUSG00000030199.16, intron 1 of 7) 22864 ENSMUSG00000108238.1 ENSMUSG00000108238 ENSMUST00000204572 Gm43984 TEC Interval_24257 chr11 31826666 31827100 + 0 NA Intergenic Intergenic -2359 ENSMUSG00000085772.7 ENSMUSG00000085772 ENSMUST00000126265 D630024D03Rik lincRNA Interval_163552 chr9 22050259 22052161 + 0 NA intron (ENSMUSG00000111842.1, intron 3 of 4) protein_coding-intron (ENSMUSG00000003410.8, intron 1 of 6) 813 ENSMUSG00000003410.8 ENSMUSG00000003410 ENSMUST00000215901 Elavl3 protein_coding Interval_172506 chrX 22088074 22089943 + 0 NA Intergenic Intergenic 116515 ENSMUSG00000082175.1 ENSMUSG00000082175 ENSMUST00000120571 Gm14563 processed_pseudogene Interval_51603 chr14 30625144 30626894 + 0 NA exon (ENSMUSG00000021948.17, exon 1 of 6) protein_coding-exon (ENSMUSG00000021948.17, exon 1 of 6) -10141 ENSMUSG00000114553.1 ENSMUSG00000114553 ENSMUST00000225011 Gm7644 lincRNA Interval_5147 chr1 86038379 86039014 + 0 NA Intergenic Intergenic -7167 ENSMUSG00000026227.11 ENSMUSG00000026227 ENSMUST00000165824 2810459M11Rik protein_coding Interval_17411 chr10 76439369 76440011 + 0 NA TTS (ENSMUSG00000117965.1) protein_coding-TTS (ENSMUSG00000117965.1) 754 ENSMUSG00000117965.1 ENSMUSG00000117965 ENSMUST00000235907 AC141477.1 protein_coding Interval_45408 chr13 54948539 54949969 + 0 NA promoter-TSS (ENSMUSG00000025876.15) protein_coding-promoter-TSS (ENSMUSG00000025876.15) -18998 ENSMUSG00000087335.2 ENSMUSG00000087335 ENSMUST00000144718 4930526F13Rik lincRNA Interval_1251 chr1 18245763 18246769 + 0 NA Intergenic Intergenic -8823 ENSMUSG00000073735.1 ENSMUSG00000073735 ENSMUST00000097818 Defb18 protein_coding Interval_133528 chr6 6168819 6169289 + 0 NA intron (ENSMUSG00000015112.15, intron 3 of 17) protein_coding-intron (ENSMUSG00000015112.15, intron 3 of 17) 4897 ENSMUSG00000015112.15 ENSMUSG00000015112 ENSMUST00000177698 Slc25a13 protein_coding Interval_171922 chr9 122595170 122595834 + 0 NA intron (ENSMUSG00000097736.8, intron 2 of 3) lincRNA-intron (ENSMUSG00000097736.8, intron 2 of 3) 23000 ENSMUSG00000097736.8 ENSMUSG00000097736 ENSMUST00000181719 9530059O14Rik lincRNA Interval_157170 chr8 66865090 66865606 + 0 NA intron (ENSMUSG00000014907.10, intron 2 of 7) protein_coding-intron (ENSMUSG00000014907.10, intron 2 of 7) 4391 ENSMUSG00000014907.10 ENSMUSG00000014907 ENSMUST00000212916 Naf1 protein_coding Interval_135214 chr6 37589240 37590106 + 0 NA Intergenic Intergenic 48259 ENSMUSG00000106889.1 ENSMUSG00000106889 ENSMUST00000201541 Gm7463 processed_pseudogene Interval_51352 chr14 26932095 26932368 + 0 NA intron (ENSMUSG00000040760.11, intron 16 of 21) protein_coding-intron (ENSMUSG00000040760.11, intron 16 of 21) 5776 ENSMUSG00000114785.1 ENSMUSG00000114785 ENSMUST00000223843 Gm41115 processed_pseudogene Interval_143920 chr7 17620053 17620429 + 0 NA Intergenic Intergenic 1742 ENSMUSG00000108792.1 ENSMUSG00000108792 ENSMUST00000206932 Gm5418 processed_pseudogene Interval_127486 chr5 104403398 104404114 + 0 NA Intergenic Intergenic -31365 ENSMUSG00000105954.1 ENSMUSG00000105954 ENSMUST00000199139 Gm42793 TEC Interval_82045 chr18 67340956 67342683 + 0 NA intron (ENSMUSG00000046415.11, intron 1 of 3) processed_transcript-intron (ENSMUSG00000046415.11, intron 1 of 4) -1785 ENSMUSG00000024526.9 ENSMUSG00000024526 ENSMUST00000025404 Cidea protein_coding Interval_147643 chr7 70552530 70552871 + 0 NA exon (ENSMUSG00000109028.1, exon 2 of 2) lincRNA-exon (ENSMUSG00000109028.1, exon 2 of 2) 3831 ENSMUSG00000109028.1 ENSMUSG00000109028 ENSMUST00000207859 Gm35842 lincRNA Interval_68947 chr16 89628810 89629021 + 0 NA Intergenic Intergenic 5225 ENSMUSG00000116651.1 ENSMUSG00000116651 ENSMUST00000232201 Gm17844 processed_pseudogene Interval_169556 chr9 99111068 99111835 + 0 NA intron (ENSMUSG00000032462.14, intron 2 of 23) protein_coding-intron (ENSMUSG00000032462.14, intron 2 of 23) 28474 ENSMUSG00000032462.14 ENSMUSG00000032462 ENSMUST00000124723 Pik3cb protein_coding Interval_4452 chr1 74277041 74277497 + 0 NA Intergenic Intergenic -1281 ENSMUSG00000064272.3 ENSMUSG00000064272 ENSMUST00000077985 Gpbar1 protein_coding Interval_138564 chr6 89351318 89352187 + 0 NA intron (ENSMUSG00000030084.11, intron 3 of 31) protein_coding-intron (ENSMUSG00000030084.11, intron 2 of 31) 6612 ENSMUSG00000107570.1 ENSMUSG00000107570 ENSMUST00000204568 Gm44207 TEC Interval_160970 chr8 116582749 116583359 + 0 NA exon (ENSMUSG00000031758.10, exon 5 of 7) protein_coding-exon (ENSMUSG00000031758.10, exon 5 of 7) 78080 ENSMUSG00000034467.7 ENSMUSG00000034467 ENSMUST00000078170 Dynlrb2 protein_coding Interval_82010 chr18 67155784 67155971 + 0 NA intron (ENSMUSG00000024524.17, intron 4 of 5) protein_coding-intron (ENSMUSG00000024524.17, intron 4 of 11) -4505 ENSMUSG00000118131.1 ENSMUSG00000118131 ENSMUST00000237741 Gm50167 TEC Interval_87594 chr19 53636982 53637169 + 0 NA TTS (ENSMUSG00000024974.10) protein_coding-TTS (ENSMUSG00000024974.10) -6283 ENSMUSG00000024974.10 ENSMUSG00000024974 ENSMUST00000171083 Smc3 protein_coding Interval_142290 chr6 140468298 140468881 + 0 NA intron (ENSMUSG00000030231.11, intron 1 of 9) protein_coding-intron (ENSMUSG00000030231.11, intron 3 of 30) 48418 ENSMUSG00000107891.1 ENSMUSG00000107891 ENSMUST00000204085 Gm5051 processed_pseudogene Interval_89884 chr2 26206309 26206914 + 0 NA promoter-TSS (ENSMUSG00000026934.15) protein_coding-promoter-TSS (ENSMUSG00000026934.15) -91 ENSMUSG00000098977.1 ENSMUSG00000098977 ENSMUST00000184787 Gm27196 antisense Interval_135484 chr6 39573590 39575222 + 0 NA promoter-TSS (ENSMUSG00000046947.12) protein_coding-promoter-TSS (ENSMUSG00000046947.12) -1986 ENSMUSG00000046947.12 ENSMUSG00000046947 ENSMUST00000127427 Adck2 protein_coding Interval_23318 chr11 21334001 21334205 + 0 NA intron (ENSMUSG00000001891.16, intron 3 of 9) protein_coding-intron (ENSMUSG00000001891.16, intron 3 of 9) 10572 ENSMUSG00000089555.1 ENSMUSG00000089555 ENSMUST00000158930 Mir1933 miRNA Interval_32534 chr11 108223161 108223579 + 0 NA intron (ENSMUSG00000050965.14, intron 2 of 2) protein_coding-intron (ENSMUSG00000050965.14, intron 2 of 16) 41520 ENSMUSG00000084978.1 ENSMUSG00000084978 ENSMUST00000153899 Gm11655 antisense Interval_63903 chr16 4489144 4489640 + 0 NA intron (ENSMUSG00000022519.14, intron 3 of 3) protein_coding-intron (ENSMUSG00000022519.14, intron 4 of 6) -49916 ENSMUSG00000083585.1 ENSMUSG00000083585 ENSMUST00000122114 Gm15885 processed_pseudogene Interval_144141 chr7 19619085 19619800 + 0 NA intron (ENSMUSG00000002983.17, intron 4 of 4) protein_coding-intron (ENSMUSG00000002983.17, intron 3 of 10) 9806 ENSMUSG00000002983.17 ENSMUSG00000002983 ENSMUST00000141586 Relb protein_coding Interval_22258 chr11 8385322 8386296 + 0 NA Intergenic Intergenic -1956 ENSMUSG00000083553.1 ENSMUSG00000083553 ENSMUST00000117240 Gm11989 processed_pseudogene Interval_156866 chr8 61308741 61310091 + 0 NA intron (ENSMUSG00000031642.9, intron 2 of 10) protein_coding-intron (ENSMUSG00000031642.9, intron 2 of 11) -20544 ENSMUSG00000099419.1 ENSMUSG00000099419 ENSMUST00000188654 1700001D01Rik antisense Interval_90953 chr2 33682305 33682620 + 0 NA Intergenic Intergenic -29664 ENSMUSG00000081244.3 ENSMUSG00000081244 ENSMUST00000121118 Gm13529 processed_pseudogene Interval_15389 chr10 45334780 45336185 + 0 NA promoter-TSS (ENSMUSG00000071317.4) protein_coding-promoter-TSS (ENSMUSG00000071317.4) -18026 ENSMUSG00000071317.4 ENSMUSG00000071317 ENSMUST00000213557 Bves protein_coding Interval_140915 chr6 122734336 122734591 + 0 NA intron (ENSMUSG00000003153.10, intron 5 of 8) protein_coding-intron (ENSMUSG00000003153.10, intron 6 of 9) 26974 ENSMUSG00000012396.12 ENSMUSG00000012396 ENSMUST00000012540 Nanog protein_coding Interval_95009 chr2 103000915 103001447 + 0 NA Intergenic Intergenic 72154 ENSMUSG00000010914.10 ENSMUSG00000010914 ENSMUST00000111183 Pdhx protein_coding Interval_110798 chr4 8500714 8500935 + 0 NA Intergenic Intergenic -34820 ENSMUSG00000047187.9 ENSMUSG00000047187 ENSMUST00000060232 Rab2a protein_coding Interval_124899 chr5 59865523 59865768 + 0 NA Intergenic Intergenic 87733 ENSMUSG00000104889.1 ENSMUSG00000104889 ENSMUST00000196579 Gm43043 processed_pseudogene Interval_158549 chr8 84395890 84398019 + 0 NA intron (ENSMUSG00000034656.18, intron 1 of 5) protein_coding-intron (ENSMUSG00000034656.18, intron 1 of 5) -16373 ENSMUSG00000064392.1 ENSMUSG00000064392 ENSMUST00000082458 Gm23626 snoRNA Interval_8488 chr1 140036701 140037026 + 0 NA Intergenic Intergenic 12166 ENSMUSG00000103691.1 ENSMUSG00000103691 ENSMUST00000195133 Gm38019 processed_pseudogene Interval_126094 chr5 77349927 77351208 + 0 NA intron (ENSMUSG00000036256.13, intron 5 of 5) protein_coding-intron (ENSMUSG00000036256.13, intron 4 of 4) 10199 ENSMUSG00000029250.5 ENSMUSG00000029250 ENSMUST00000150191 Polr2b protein_coding Interval_22085 chr11 6256186 6258368 + 0 NA Intergenic Intergenic 10469 ENSMUSG00000004393.10 ENSMUSG00000004393 ENSMUST00000155874 Ddx56 protein_coding Interval_141093 chr6 124925270 124926079 + 0 NA exon (ENSMUSG00000055818.2, exon 2 of 2) antisense-exon (ENSMUSG00000055818.2, exon 2 of 2) -5571 ENSMUSG00000030122.12 ENSMUSG00000030122 ENSMUST00000134916 Ptms protein_coding Interval_5516 chr1 89489235 89489471 + 0 NA intron (ENSMUSG00000055013.16, intron 1 of 16) protein_coding-intron (ENSMUSG00000055013.16, intron 1 of 17) 5915 ENSMUSG00000104114.1 ENSMUSG00000104114 ENSMUST00000192974 Gm37297 TEC Interval_109482 chr3 142841313 142841500 + 0 NA intron (ENSMUSG00000004591.16, intron 2 of 21) protein_coding-intron (ENSMUSG00000004591.16, intron 2 of 21) -38286 ENSMUSG00000004591.16 ENSMUSG00000004591 ENSMUST00000197529 Pkn2 protein_coding Interval_72211 chr17 28602018 28602248 + 0 NA promoter-TSS (ENSMUSG00000004865.16) protein_coding-promoter-TSS (ENSMUSG00000004865.16) 20350 ENSMUSG00000004865.16 ENSMUSG00000004865 ENSMUST00000114767 Srpk1 protein_coding Interval_161977 chr8 124230524 124232476 + 0 NA promoter-TSS (ENSMUSG00000089704.9) protein_coding-promoter-TSS (ENSMUSG00000089704.9) -63866 ENSMUSG00000089704.9 ENSMUSG00000089704 ENSMUST00000147911 Galnt2 protein_coding Interval_157581 chr8 71525899 71526844 + 0 NA promoter-TSS (ENSMUSG00000108900.1) protein_coding-promoter-TSS (ENSMUSG00000108900.1) -660 ENSMUSG00000108900.1 ENSMUSG00000108900 ENSMUST00000207913 Ccdc194 protein_coding Interval_15942 chr10 59527322 59527824 + 0 NA intron (ENSMUSG00000009647.13, intron 1 of 7) protein_coding-intron (ENSMUSG00000009647.13, intron 1 of 7) -88491 ENSMUSG00000071280.2 ENSMUSG00000071280 ENSMUST00000238281 Gm10322 antisense Interval_14535 chr10 35083664 35084020 + 0 NA Intergenic Intergenic -28356 ENSMUSG00000077749.1 ENSMUSG00000077749 ENSMUST00000104561 Gm26341 snoRNA Interval_46474 chr13 66437705 66437992 + 0 NA intron (ENSMUSG00000074832.11, intron 1 of 4) protein_coding-intron (ENSMUSG00000074832.11, intron 1 of 3) 3270 ENSMUSG00000074832.11 ENSMUSG00000074832 ENSMUST00000172579 2410141K09Rik protein_coding Interval_137157 chr6 68532756 68534060 + 0 NA TTS (ENSMUSG00000077325.1) snoRNA-TTS (ENSMUSG00000077325.1) 664 ENSMUSG00000077325.1 ENSMUSG00000077325 ENSMUST00000104137 Gm25833 snoRNA Interval_112398 chr4 41043040 41043280 + 0 NA intron (ENSMUSG00000028427.13, intron 1 of 5) protein_coding-intron (ENSMUSG00000028427.13, intron 3 of 7) -6850 ENSMUSG00000028427.13 ENSMUSG00000028427 ENSMUST00000149517 Aqp7 protein_coding Interval_146113 chr7 44013532 44013797 + 0 NA intron (ENSMUSG00000053719.10, intron 1 of 4) protein_coding-intron (ENSMUSG00000053719.10, intron 1 of 4) 1496 ENSMUSG00000053719.10 ENSMUSG00000053719 ENSMUST00000048945 Klk1b26 protein_coding Interval_112205 chr4 35626671 35627256 + 0 NA Intergenic Intergenic 190749 ENSMUSG00000083851.1 ENSMUSG00000083851 ENSMUST00000117931 Gm12365 processed_pseudogene Interval_17656 chr10 78540832 78541504 + 0 NA Intergenic Intergenic -2108 ENSMUSG00000112313.1 ENSMUSG00000112313 ENSMUST00000220283 Gm5951 processed_pseudogene Interval_160673 chr8 111521574 111522531 + 0 NA promoter-TSS (ENSMUSG00000031959.15) protein_coding-promoter-TSS (ENSMUSG00000031959.15) -15526 ENSMUSG00000033545.14 ENSMUSG00000033545 ENSMUST00000173819 Znrf1 protein_coding Interval_94843 chr2 96430320 96431625 + 0 NA intron (ENSMUSG00000050587.14, intron 1 of 7) protein_coding-intron (ENSMUSG00000050587.14, intron 1 of 6) 297537 ENSMUSG00000082327.1 ENSMUSG00000082327 ENSMUST00000120750 Gm13801 processed_pseudogene Interval_130541 chr5 128681513 128681846 + 0 NA Intergenic Intergenic -20845 ENSMUSG00000029423.10 ENSMUSG00000029423 ENSMUST00000195959 Piwil1 protein_coding Interval_164002 chr9 30765276 30766078 + 0 NA intron (ENSMUSG00000111867.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000111867.1, intron 1 of 1) -12795 ENSMUSG00000111249.1 ENSMUSG00000111249 ENSMUST00000215919 Gm47717 processed_pseudogene Interval_83724 chr19 3966279 3967008 + 0 NA intron (ENSMUSG00000037263.13, intron 7 of 8) protein_coding-intron (ENSMUSG00000037263.13, intron 1 of 2) -5685 ENSMUSG00000075296.5 ENSMUSG00000075296 ENSMUST00000143380 Aldh3b2 protein_coding Interval_69058 chr16 90357988 90358201 + 0 NA intron (ENSMUSG00000116849.1, intron 2 of 2) lincRNA-intron (ENSMUSG00000116989.1, intron 2 of 2) 5023 ENSMUSG00000116849.1 ENSMUSG00000116849 ENSMUST00000231427 Gm49710 lincRNA Interval_131227 chr5 135912960 135913432 + 0 NA intron (ENSMUSG00000051391.9, intron 1 of 2) protein_coding-intron (ENSMUSG00000051391.9, intron 1 of 1) -16710 ENSMUSG00000105047.1 ENSMUSG00000105047 ENSMUST00000196247 Gm42533 processed_pseudogene Interval_57194 chr15 7328965 7329251 + 0 NA intron (ENSMUSG00000042961.13, intron 1 of 15) protein_coding-intron (ENSMUSG00000042961.13, intron 1 of 21) -12806 ENSMUSG00000089966.1 ENSMUSG00000089966 ENSMUST00000159098 Gm16030 processed_pseudogene Interval_82932 chr18 79581054 79581344 + 0 NA Intergenic Intergenic -5839 ENSMUSG00000118130.1 ENSMUSG00000118130 ENSMUST00000237642 Gm50176 processed_pseudogene Interval_31862 chr11 103421875 103422078 + 0 NA TTS (ENSMUSG00000110636.1) lincRNA-TTS (ENSMUSG00000110636.1) 240 ENSMUSG00000110636.1 ENSMUSG00000110636 ENSMUST00000212331 Gm39397 lincRNA Interval_61170 chr15 79641059 79642481 + 0 NA promoter-TSS (ENSMUSG00000042564.13) protein_coding-promoter-TSS (ENSMUSG00000042564.13) 17154 ENSMUSG00000042564.13 ENSMUSG00000042564 ENSMUST00000231126 Fam227a protein_coding Interval_51272 chr14 25665223 25666001 + 0 NA TTS (ENSMUSG00000007817.15) protein_coding-TTS (ENSMUSG00000007817.15) -28582 ENSMUSG00000021868.7 ENSMUSG00000021868 ENSMUST00000223872 Ppif protein_coding Interval_64089 chr16 7740394 7740622 + 0 NA Intergenic Intergenic -31442 ENSMUSG00000115989.1 ENSMUSG00000115989 ENSMUST00000229672 Gm49533 processed_pseudogene Interval_132582 chr5 146442262 146443218 + 0 NA intron (ENSMUSG00000029636.11, intron 3 of 9) protein_coding-intron (ENSMUSG00000029636.11, intron 3 of 9) -12869 ENSMUSG00000029636.11 ENSMUSG00000029636 ENSMUST00000238592 Wasf3 protein_coding Interval_66849 chr16 38119370 38119584 + 0 NA intron (ENSMUSG00000022812.14, intron 1 of 11) protein_coding-intron (ENSMUSG00000022812.14, intron 1 of 10) -38531 ENSMUSG00000095395.2 ENSMUSG00000095395 ENSMUST00000179548 Gm25617 snoRNA Interval_145905 chr7 41587695 41588134 + 0 NA Intergenic Intergenic -6978 ENSMUSG00000108482.1 ENSMUSG00000108482 ENSMUST00000205343 Gm45078 processed_pseudogene Interval_104513 chr3 67151562 67151788 + 0 NA intron (ENSMUSG00000034544.17, intron 4 of 8) protein_coding-intron (ENSMUSG00000034544.17, intron 3 of 8) 95717 ENSMUSG00000065245.1 ENSMUSG00000065245 ENSMUST00000083311 Gm22295 snRNA Interval_103252 chr3 37540618 37541160 + 0 NA intron (ENSMUSG00000027722.14, intron 16 of 16) protein_coding-intron (ENSMUSG00000027722.14, intron 15 of 15) 15614 ENSMUSG00000080723.1 ENSMUSG00000080723 ENSMUST00000119860 Gm12564 processed_pseudogene Interval_59115 chr15 44294841 44295516 + 0 NA Intergenic Intergenic 13198 ENSMUSG00000115730.1 ENSMUSG00000115730 ENSMUST00000226624 Gm7459 processed_pseudogene Interval_101297 chr2 180227030 180228033 + 0 NA Intergenic Intergenic -29848 ENSMUSG00000039001.12 ENSMUSG00000039001 ENSMUST00000145043 Rps21 protein_coding Interval_79222 chr18 25840680 25841467 + 0 NA intron (ENSMUSG00000117410.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000117410.1, intron 1 of 1) 1996 ENSMUSG00000117410.1 ENSMUSG00000117410 ENSMUST00000234817 Gm50304 lincRNA Interval_99069 chr2 156996726 156996959 + 0 NA TTS (ENSMUSG00000027635.15) protein_coding-TTS (ENSMUSG00000027635.15) -1950 ENSMUSG00000082163.2 ENSMUSG00000082163 ENSMUST00000117941 Gm14276 processed_pseudogene Interval_168010 chr9 75388661 75388920 + 0 NA exon (ENSMUSG00000042688.16, exon 6 of 6) protein_coding-exon (ENSMUSG00000042688.16, exon 6 of 6) 8817 ENSMUSG00000042688.16 ENSMUSG00000042688 ENSMUST00000172665 Mapk6 protein_coding Interval_150273 chr7 109185228 109185731 + 0 NA Intergenic Intergenic -14967 ENSMUSG00000036111.8 ENSMUSG00000036111 ENSMUST00000208136 Lmo1 protein_coding Interval_160908 chr8 114922523 114924130 + 0 NA intron (ENSMUSG00000004637.15, intron 8 of 8) protein_coding-intron (ENSMUSG00000004637.15, intron 8 of 8) 129587 ENSMUSG00000088428.1 ENSMUSG00000088428 ENSMUST00000157803 Gm22556 rRNA Interval_111649 chr4 25188736 25189686 + 0 NA intron (ENSMUSG00000085885.1, intron 2 of 4) processed_transcript-intron (ENSMUSG00000085885.1, intron 2 of 4) 53665 ENSMUSG00000028259.13 ENSMUSG00000028259 ENSMUST00000108204 Fhl5 protein_coding Interval_3523 chr1 59316656 59317182 + 0 NA intron (ENSMUSG00000026023.16, intron 3 of 4) protein_coding-intron (ENSMUSG00000026023.16, intron 10 of 13) 17983 ENSMUSG00000026023.16 ENSMUSG00000026023 ENSMUST00000162906 Cdk15 protein_coding Interval_8472 chr1 139715550 139717454 + 0 NA intron (ENSMUSG00000070594.10, intron 12 of 13) protein_coding-intron (ENSMUSG00000070594.10, intron 12 of 13) 44898 ENSMUSG00000096117.1 ENSMUSG00000096117 ENSMUST00000158349 Gm26271 snRNA Interval_80293 chr18 38906243 38908212 + 0 NA intron (ENSMUSG00000117994.1, intron 2 of 2) protein_coding-intron (ENSMUSG00000036585.16, intron 1 of 3) 14510 ENSMUSG00000117994.1 ENSMUSG00000117994 ENSMUST00000156167 Gm5820 lincRNA Interval_119089 chr4 135480242 135481507 + 0 NA intron (ENSMUSG00000028803.18, intron 3 of 12) protein_coding-intron (ENSMUSG00000028803.18, intron 3 of 11) 13632 ENSMUSG00000028803.18 ENSMUSG00000028803 ENSMUST00000146617 Nipal3 protein_coding Interval_167034 chr9 64703174 64703473 + 0 NA intron (ENSMUSG00000036466.17, intron 23 of 24) protein_coding-intron (ENSMUSG00000036466.17, intron 24 of 24) 22397 ENSMUSG00000004771.12 ENSMUSG00000004771 ENSMUST00000165083 Rab11a protein_coding Interval_63869 chr16 4094670 4096632 + 0 NA intron (ENSMUSG00000022521.10, intron 1 of 2) protein_coding-intron (ENSMUSG00000022521.10, intron 23 of 30) -1007 ENSMUSG00000022521.10 ENSMUSG00000022521 ENSMUST00000205685 Crebbp protein_coding Interval_19112 chr10 94667896 94668669 + 0 NA Intergenic Intergenic -15230 ENSMUSG00000112473.1 ENSMUSG00000112473 ENSMUST00000218051 Gm48658 processed_pseudogene Interval_163705 chr9 24714986 24715612 + 0 NA Intergenic Intergenic -19006 ENSMUSG00000085576.3 ENSMUSG00000085576 ENSMUST00000133010 Dpy19l2 protein_coding Interval_117296 chr4 122807945 122808838 + 0 NA Intergenic Intergenic -14642 ENSMUSG00000083494.1 ENSMUSG00000083494 ENSMUST00000119988 Gm12873 unprocessed_pseudogene Interval_23822 chr11 26574004 26575322 + 0 NA intron (ENSMUSG00000064090.14, intron 2 of 4) protein_coding-intron (ENSMUSG00000064090.14, intron 2 of 12) -18563 ENSMUSG00000068314.5 ENSMUSG00000068314 ENSMUST00000089614 Gm6899 TEC Interval_36469 chr12 45385013 45385598 + 0 NA Intergenic Intergenic 25606 ENSMUSG00000089226.1 ENSMUSG00000089226 ENSMUST00000158601 Gm22076 rRNA Interval_14659 chr10 38185371 38185759 + 0 NA Intergenic Intergenic 6112 ENSMUSG00000077576.1 ENSMUSG00000077576 ENSMUST00000104388 Gm24889 snoRNA Interval_53409 chr14 57082929 57083879 + 0 NA Intergenic Intergenic 21298 ENSMUSG00000046352.7 ENSMUSG00000046352 ENSMUST00000055698 Gjb2 protein_coding Interval_123845 chr5 35917991 35918187 + 0 NA exon (ENSMUSG00000082692.2, exon 1 of 1) processed_pseudogene-exon (ENSMUSG00000082692.2, exon 1 of 1) 192 ENSMUSG00000082692.2 ENSMUSG00000082692 ENSMUST00000119066 H2af-ps processed_pseudogene Interval_97414 chr2 135947883 135948423 + 0 NA intron (ENSMUSG00000039943.16, intron 12 of 36) protein_coding-intron (ENSMUSG00000039943.16, intron 11 of 35) 78098 ENSMUSG00000064444.1 ENSMUSG00000064444 ENSMUST00000082510 Gm26227 snRNA Interval_157197 chr8 67514472 67515656 + 0 NA exon (ENSMUSG00000030735.6, exon 1 of 1) processed_pseudogene-exon (ENSMUSG00000030735.6, exon 1 of 1) 526 ENSMUSG00000030735.6 ENSMUSG00000030735 ENSMUST00000032981 Gm9755 processed_pseudogene Interval_96321 chr2 121599284 121599499 + 0 NA intron (ENSMUSG00000027238.17, intron 1 of 7) protein_coding-intron (ENSMUSG00000027238.17, intron 1 of 13) -48040 ENSMUSG00000027238.17 ENSMUSG00000027238 ENSMUST00000153704 Frmd5 protein_coding Interval_78227 chr18 10393006 10393709 + 0 NA intron (ENSMUSG00000042942.18, intron 1 of 8) protein_coding-intron (ENSMUSG00000042942.18, intron 1 of 32) -27284 ENSMUSG00000105513.1 ENSMUSG00000105513 ENSMUST00000198810 Gm44409 miRNA Interval_28326 chr11 75213424 75215294 + 0 NA intron (ENSMUSG00000045287.6, intron 1 of 1) protein_coding-intron (ENSMUSG00000045287.6, intron 1 of 1) 20576 ENSMUSG00000045287.6 ENSMUSG00000045287 ENSMUST00000102514 Rtn4rl1 protein_coding Interval_159481 chr8 94992962 94993317 + 0 NA intron (ENSMUSG00000031785.16, intron 1 of 2) protein_coding-intron (ENSMUSG00000031785.16, intron 1 of 13) -1339 ENSMUSG00000031785.16 ENSMUSG00000031785 ENSMUST00000211911 Adgrg1 protein_coding Interval_94834 chr2 95808788 95809294 + 0 NA Intergenic Intergenic -29047 ENSMUSG00000087537.1 ENSMUSG00000087537 ENSMUST00000138883 Gm13799 lincRNA Interval_141153 chr6 125284924 125286546 + 0 NA exon (ENSMUSG00000108129.2, exon 4 of 4) processed_transcript-exon (ENSMUSG00000108129.2, exon 4 of 4) 307 ENSMUSG00000067702.5 ENSMUSG00000067702 ENSMUST00000088246 Tuba3a protein_coding Interval_48971 chr13 106433784 106434469 + 0 NA Intergenic Intergenic -41810 ENSMUSG00000114217.1 ENSMUSG00000114217 ENSMUST00000224407 Gm7054 processed_pseudogene Interval_120355 chr4 148077794 148078506 + 0 NA exon (ENSMUSG00000029007.8, exon 5 of 5) protein_coding-exon (ENSMUSG00000029007.8, exon 5 of 5) -5134 ENSMUSG00000078494.5 ENSMUSG00000078494 ENSMUST00000144031 Gm13201 antisense Interval_92394 chr2 59470100 59472297 + 0 NA Intergenic Intergenic -13471 ENSMUSG00000026989.5 ENSMUSG00000026989 ENSMUST00000144415 Dapl1 protein_coding Interval_152872 chr7 139377283 139377775 + 0 NA Intergenic Intergenic -80664 ENSMUSG00000110115.1 ENSMUSG00000110115 ENSMUST00000209810 Gm32486 lincRNA Interval_166730 chr9 62313492 62313749 + 0 NA intron (ENSMUSG00000111193.1, intron 4 of 7) lincRNA-intron (ENSMUSG00000111193.1, intron 4 of 7) 15118 ENSMUSG00000111193.1 ENSMUSG00000111193 ENSMUST00000216565 Gm35288 lincRNA Interval_145976 chr7 42775059 42775560 + 0 NA intron (ENSMUSG00000091926.3, intron 5 of 5) protein_coding-intron (ENSMUSG00000091926.3, intron 5 of 5) 18216 ENSMUSG00000091926.3 ENSMUSG00000091926 ENSMUST00000169130 Vmn2r62 protein_coding Interval_21834 chr11 4653524 4653825 + 0 NA intron (ENSMUSG00000020412.16, intron 5 of 18) protein_coding-intron (ENSMUSG00000020412.16, intron 5 of 19) 15927 ENSMUSG00000020412.16 ENSMUSG00000020412 ENSMUST00000109930 Ascc2 protein_coding Interval_11645 chr1 183749294 183749731 + 0 NA intron (ENSMUSG00000103305.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000103305.1, intron 1 of 2) 535 ENSMUSG00000103305.1 ENSMUSG00000103305 ENSMUST00000193310 Gm34068 lincRNA Interval_122219 chr5 20227117 20227305 + 0 NA promoter-TSS (ENSMUSG00000040003.18) protein_coding-promoter-TSS (ENSMUSG00000040003.18) -975 ENSMUSG00000040003.18 ENSMUSG00000040003 ENSMUST00000197307 Magi2 protein_coding Interval_150769 chr7 114254137 114255171 + 0 NA promoter-TSS (ENSMUSG00000030754.9) protein_coding-promoter-TSS (ENSMUSG00000030754.9) 37 ENSMUSG00000030754.9 ENSMUSG00000030754 ENSMUST00000211417 Copb1 protein_coding Interval_87226 chr19 47039562 47039937 + 0 NA intron (ENSMUSG00000025050.8, intron 6 of 6) protein_coding-intron (ENSMUSG00000025050.8, intron 8 of 9) 11141 ENSMUSG00000025050.8 ENSMUSG00000025050 ENSMUST00000236339 Pcgf6 protein_coding Interval_77732 chr17 94756940 94757126 + 0 NA promoter-TSS (ENSMUSG00000098121.1) processed_pseudogene-promoter-TSS (ENSMUSG00000098121.1) -161 ENSMUSG00000098121.1 ENSMUSG00000098121 ENSMUST00000182794 Gm27038 processed_pseudogene Interval_154400 chr8 15623443 15624589 + 0 NA intron (ENSMUSG00000110217.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000110217.1, intron 1 of 2) -5965 ENSMUSG00000110201.1 ENSMUSG00000110201 ENSMUST00000211202 Gm45675 TEC Interval_105110 chr3 81429140 81429487 + 0 NA Intergenic Intergenic -23741 ENSMUSG00000102223.1 ENSMUSG00000102223 ENSMUST00000193327 Gm37300 processed_pseudogene Interval_27271 chr11 65140290 65140629 + 0 NA intron (ENSMUSG00000033389.16, intron 1 of 20) protein_coding-intron (ENSMUSG00000033389.16, intron 1 of 20) 19432 ENSMUSG00000020548.10 ENSMUSG00000020548 ENSMUST00000108696 1700086D15Rik protein_coding Interval_32976 chr11 113470163 113471532 + 0 NA exon (ENSMUSG00000078251.2, exon 2 of 2) pseudogene-exon (ENSMUSG00000078251.2, exon 2 of 2) 2870 ENSMUSG00000078251.2 ENSMUSG00000078251 ENSMUST00000105048 Gm16487 pseudogene Interval_105094 chr3 81126939 81127349 + 0 NA intron (ENSMUSG00000028019.9, intron 1 of 5) protein_coding-intron (ENSMUSG00000028019.9, intron 1 of 5) -86707 ENSMUSG00000085106.1 ENSMUSG00000085106 ENSMUST00000146657 Gm16000 antisense Interval_484 chr1 6272257 6272493 + 0 NA exon (ENSMUSG00000025907.14, exon 3 of 3) protein_coding-exon (ENSMUSG00000025907.14, exon 3 of 3) 44373 ENSMUSG00000025907.14 ENSMUSG00000025907 ENSMUST00000159656 Rb1cc1 protein_coding Interval_23260 chr11 20967949 20969259 + 0 NA Intergenic Intergenic -30903 ENSMUSG00000096061.1 ENSMUSG00000096061 ENSMUST00000178821 Gm23681 miRNA Interval_156949 chr8 62162368 62163140 + 0 NA Intergenic Intergenic 31458 ENSMUSG00000110252.1 ENSMUSG00000110252 ENSMUST00000211074 Gm2961 processed_pseudogene Interval_91012 chr2 34231426 34231982 + 0 NA intron (ENSMUSG00000038718.15, intron 1 of 5) protein_coding-intron (ENSMUSG00000038718.15, intron 2 of 8) -56067 ENSMUSG00000084908.2 ENSMUSG00000084908 ENSMUST00000131588 C79798 antisense Interval_16733 chr10 67721762 67722823 + 0 NA Intergenic Intergenic -4253 ENSMUSG00000112619.1 ENSMUSG00000112619 ENSMUST00000218164 1700030E10Rik lincRNA Interval_77458 chr17 89002672 89003011 + 0 NA intron (ENSMUSG00000032937.5, intron 6 of 9) protein_coding-intron (ENSMUSG00000032937.5, intron 6 of 9) -146219 ENSMUSG00000117566.1 ENSMUSG00000117566 ENSMUST00000234561 Gm9407 processed_pseudogene Interval_45859 chr13 58592966 58593498 + 0 NA intron (ENSMUSG00000021553.14, intron 1 of 5) protein_coding-intron (ENSMUSG00000021553.14, intron 1 of 17) 17645 ENSMUSG00000021553.14 ENSMUSG00000021553 ENSMUST00000151675 Slc28a3 protein_coding Interval_16830 chr10 68908312 68908503 + 0 NA Intergenic Intergenic -3907 ENSMUSG00000112333.1 ENSMUSG00000112333 ENSMUST00000219825 1700048P04Rik lincRNA Interval_93698 chr2 75969949 75970529 + 0 NA Intergenic Intergenic 7931 ENSMUSG00000075272.4 ENSMUSG00000075272 ENSMUST00000099995 Ttc30a2 protein_coding Interval_37311 chr12 65063691 65063975 + 0 NA TTS (ENSMUSG00000035597.19) protein_coding-TTS (ENSMUSG00000035597.19) 2609 ENSMUSG00000020949.9 ENSMUSG00000020949 ENSMUST00000221706 Fkbp3 protein_coding Interval_9462 chr1 157417781 157418683 + 0 NA intron (ENSMUSG00000049881.13, intron 2 of 2) transcribed_processed_pseudogene-intron (ENSMUSG00000049881.13, intron 2 of 2) 5254 ENSMUSG00000049881.13 ENSMUSG00000049881 ENSMUST00000189791 2810025M15Rik transcribed_processed_pseudogene Interval_116809 chr4 117390527 117391119 + 0 NA intron (ENSMUSG00000028677.19, intron 2 of 2) protein_coding-intron (ENSMUSG00000028677.19, intron 2 of 14) -55127 ENSMUSG00000086876.1 ENSMUSG00000086876 ENSMUST00000136115 Gm12828 antisense Interval_10729 chr1 173684854 173685182 + 0 NA intron (ENSMUSG00000066677.12, intron 3 of 5) protein_coding-intron (ENSMUSG00000066677.12, intron 4 of 6) 11343 ENSMUSG00000066677.12 ENSMUSG00000066677 ENSMUST00000169857 Ifi208 protein_coding Interval_163075 chr9 15033755 15035202 + 0 NA intron (ENSMUSG00000031934.14, intron 1 of 4) protein_coding-intron (ENSMUSG00000031934.14, intron 1 of 3) 9319 ENSMUSG00000031934.14 ENSMUSG00000031934 ENSMUST00000169288 Panx1 protein_coding Interval_151023 chr7 117881997 117883077 + 0 NA Intergenic Intergenic 105743 ENSMUSG00000088116.1 ENSMUSG00000088116 ENSMUST00000157491 Gm24063 miRNA Interval_131390 chr5 136895215 136896354 + 0 NA promoter-TSS (ENSMUSG00000104707.1) processed_pseudogene-promoter-TSS (ENSMUSG00000104707.1) -860 ENSMUSG00000104707.1 ENSMUSG00000104707 ENSMUST00000196596 Gm43649 processed_pseudogene Interval_143002 chr6 148248548 148249425 + 0 NA intron (ENSMUSG00000030306.14, intron 15 of 16) protein_coding-intron (ENSMUSG00000030306.14, intron 14 of 19) -12164 ENSMUSG00000082199.1 ENSMUSG00000082199 ENSMUST00000120136 Gm15763 processed_pseudogene Interval_70757 chr17 14198014 14198364 + 0 NA intron (ENSMUSG00000048826.7, intron 2 of 2) protein_coding-intron (ENSMUSG00000048826.7, intron 2 of 3) -5539 ENSMUSG00000117185.1 ENSMUSG00000117185 ENSMUST00000232962 Gm34510 antisense Interval_93744 chr2 76468348 76468611 + 0 NA intron (ENSMUSG00000042359.18, intron 1 of 24) protein_coding-intron (ENSMUSG00000042359.18, intron 1 of 26) -10740 ENSMUSG00000092825.1 ENSMUSG00000092825 ENSMUST00000175084 Gm23164 miRNA Interval_173227 chrX 74438681 74438926 + 0 NA promoter-TSS (ENSMUSG00000004221.16) protein_coding-promoter-TSS (ENSMUSG00000004221.16) -9923 ENSMUSG00000031400.10 ENSMUSG00000031400 ENSMUST00000155963 G6pdx protein_coding Interval_109863 chr3 149111840 149112441 + 0 NA Intergenic Intergenic 83208 ENSMUSG00000065270.1 ENSMUSG00000065270 ENSMUST00000083336 Gm25127 snRNA Interval_93362 chr2 72413950 72415597 + 0 NA intron (ENSMUSG00000004085.14, intron 14 of 19) protein_coding-intron (ENSMUSG00000004085.14, intron 14 of 19) 54526 ENSMUSG00000084261.1 ENSMUSG00000084261 ENSMUST00000121019 Rpl36a-ps4 processed_pseudogene Interval_153465 chr7 144982153 144983168 + 0 NA Intergenic Intergenic -42735 ENSMUSG00000070348.5 ENSMUSG00000070348 ENSMUST00000135985 Ccnd1 protein_coding Interval_152215 chr7 130692420 130693958 + 0 NA exon (ENSMUSG00000030852.18, exon 1 of 1) protein_coding-exon (ENSMUSG00000030852.18, exon 1 of 1) -20488 ENSMUSG00000030852.18 ENSMUSG00000030852 ENSMUST00000207230 Tacc2 protein_coding Interval_48058 chr13 95626765 95627029 + 0 NA TTS (ENSMUSG00000021676.10) protein_coding-TTS (ENSMUSG00000021676.10) -8410 ENSMUSG00000048376.6 ENSMUSG00000048376 ENSMUST00000059193 F2r protein_coding Interval_50207 chr14 9698560 9699138 + 0 NA intron (ENSMUSG00000060579.13, intron 4 of 5) protein_coding-intron (ENSMUSG00000060579.13, intron 8 of 9) -164253 ENSMUSG00000089795.1 ENSMUSG00000089795 ENSMUST00000162465 Hmgb3-ps processed_pseudogene Interval_104879 chr3 77557407 77557620 + 0 NA Intergenic Intergenic 6357 ENSMUSG00000102489.1 ENSMUSG00000102489 ENSMUST00000192011 Dnmt3a-ps1 processed_pseudogene Interval_119781 chr4 139950058 139951371 + 0 NA Intergenic Intergenic -7195 ENSMUSG00000085928.1 ENSMUSG00000085928 ENSMUST00000138672 4933427I22Rik lincRNA Interval_162881 chr9 11277415 11278166 + 0 NA exon (ENSMUSG00000110734.1, exon 1 of 1) processed_pseudogene-exon (ENSMUSG00000110734.1, exon 1 of 1) 253 ENSMUSG00000110734.1 ENSMUSG00000110734 ENSMUST00000216671 Gm18934 processed_pseudogene Interval_53535 chr14 58597806 58598473 + 0 NA Intergenic Intergenic 52261 ENSMUSG00000077201.1 ENSMUSG00000077201 ENSMUST00000104013 Gm25614 snoRNA Interval_154787 chr8 23375978 23376187 + 0 NA Intergenic Intergenic -35420 ENSMUSG00000031548.7 ENSMUSG00000031548 ENSMUST00000033952 Sfrp1 protein_coding Interval_37956 chr12 73334203 73334628 + 0 NA intron (ENSMUSG00000044712.15, intron 6 of 15) protein_coding-intron (ENSMUSG00000044712.15, intron 2 of 4) -20666 ENSMUSG00000113425.1 ENSMUSG00000113425 ENSMUST00000222671 Gm48653 lincRNA Interval_25549 chr11 49706085 49706488 + 0 NA intron (ENSMUSG00000020362.13, intron 1 of 11) protein_coding-intron (ENSMUSG00000020362.13, intron 1 of 11) 8406 ENSMUSG00000081570.1 ENSMUSG00000081570 ENSMUST00000120146 Gm12192 processed_pseudogene Interval_57600 chr15 12713134 12713745 + 0 NA intron (ENSMUSG00000022197.16, intron 2 of 4) protein_coding-intron (ENSMUSG00000022197.16, intron 2 of 4) 18315 ENSMUSG00000095842.1 ENSMUSG00000095842 ENSMUST00000178350 Gm24302 miRNA Interval_24434 chr11 33232477 33232771 + 0 NA intron (ENSMUSG00000040594.19, intron 25 of 27) protein_coding-intron (ENSMUSG00000040594.19, intron 25 of 27) 28569 ENSMUSG00000087501.1 ENSMUSG00000087501 ENSMUST00000131851 Gm12116 lincRNA Interval_84570 chr19 12794706 12796926 + 0 NA promoter-TSS (ENSMUSG00000024696.9) protein_coding-promoter-TSS (ENSMUSG00000024696.9) 310 ENSMUSG00000118491.1 ENSMUSG00000118491 ENSMUST00000142247 Zfp91 protein_coding Interval_162224 chr8 126138545 126139833 + 0 NA promoter-TSS (ENSMUSG00000057060.8) protein_coding-promoter-TSS (ENSMUSG00000057060.8) 194 ENSMUSG00000057060.8 ENSMUSG00000057060 ENSMUST00000108759 Slc35f3 protein_coding Interval_57244 chr15 8101842 8102983 + 0 NA Intergenic Intergenic -3203 ENSMUSG00000039828.7 ENSMUSG00000039828 ENSMUST00000227371 Wdr70 protein_coding Interval_163154 chr9 15922431 15922883 + 0 NA promoter-TSS (ENSMUSG00000074505.6) protein_coding-promoter-TSS (ENSMUSG00000074505.6) -48101 ENSMUSG00000050901.6 ENSMUSG00000050901 ENSMUST00000057920 Mtnr1b protein_coding Interval_66985 chr16 39002808 39003833 + 0 NA intron (ENSMUSG00000022790.14, intron 1 of 6) protein_coding-intron (ENSMUSG00000022790.14, intron 1 of 6) 76111 ENSMUSG00000089607.1 ENSMUSG00000089607 ENSMUST00000158982 Gm22500 snRNA Interval_147410 chr7 66543648 66545276 + 0 NA Intergenic Intergenic 21163 ENSMUSG00000109330.1 ENSMUSG00000109330 ENSMUST00000208155 Gm44754 processed_pseudogene Interval_49961 chr13 118954507 118954842 + 0 NA Intergenic Intergenic -96260 ENSMUSG00000114868.1 ENSMUSG00000114868 ENSMUST00000224309 Gm47335 processed_pseudogene Interval_19568 chr10 103353435 103354305 + 0 NA Intergenic Intergenic -39580 ENSMUSG00000019894.14 ENSMUSG00000019894 ENSMUST00000219936 Slc6a15 protein_coding Interval_147233 chr7 64882669 64882974 + 0 NA intron (ENSMUSG00000030518.17, intron 2 of 9) protein_coding-intron (ENSMUSG00000030518.17, intron 2 of 9) -9824 ENSMUSG00000070520.4 ENSMUSG00000070520 ENSMUST00000094331 Nsmce3 protein_coding Interval_92508 chr2 60209280 60210908 + 0 NA promoter-TSS (ENSMUSG00000026977.17) protein_coding-promoter-TSS (ENSMUSG00000026977.17) 181 ENSMUSG00000026977.17 ENSMUSG00000026977 ENSMUST00000136367 Marchf7 protein_coding Interval_23525 chr11 23124243 23125024 + 0 NA Intergenic Intergenic -27507 ENSMUSG00000086366.1 ENSMUSG00000086366 ENSMUST00000141678 1700061J23Rik lincRNA Interval_79931 chr18 36017934 36019178 + 0 NA exon (ENSMUSG00000060275.14, exon 10 of 10) protein_coding-exon (ENSMUSG00000060275.14, exon 10 of 10) 50069 ENSMUSG00000060275.14 ENSMUSG00000060275 ENSMUST00000115705 Nrg2 protein_coding Interval_47187 chr13 77428725 77429466 + 0 NA intron (ENSMUSG00000071252.6, intron 19 of 19) protein_coding-intron (ENSMUSG00000071252.6, intron 19 of 19) 125278 ENSMUSG00000114778.1 ENSMUSG00000114778 ENSMUST00000223622 Gm9634 processed_pseudogene Interval_46049 chr13 60594130 60594791 + 0 NA Intergenic Intergenic -7487 ENSMUSG00000021559.14 ENSMUSG00000021559 ENSMUST00000225952 Dapk1 protein_coding Interval_70950 chr17 16697151 16697501 + 0 NA Intergenic Intergenic -27140 ENSMUSG00000116864.1 ENSMUSG00000116864 ENSMUST00000231447 Gm3320 processed_pseudogene Interval_33146 chr11 114736791 114737910 + 0 NA intron (ENSMUSG00000034706.16, intron 1 of 7) protein_coding-intron (ENSMUSG00000034706.16, intron 4 of 12) 9942 ENSMUSG00000034706.16 ENSMUSG00000034706 ENSMUST00000130692 Dnaic2 protein_coding Interval_81943 chr18 66112312 66114043 + 0 NA intron (ENSMUSG00000046318.16, intron 1 of 9) protein_coding-intron (ENSMUSG00000046318.16, intron 2 of 11) 76350 ENSMUSG00000117907.1 ENSMUSG00000117907 ENSMUST00000235539 Gm50142 lincRNA Interval_57027 chr15 4560936 4561196 + 0 NA intron (ENSMUSG00000049148.8, intron 2 of 2) protein_coding-intron (ENSMUSG00000049148.8, intron 2 of 2) 185575 ENSMUSG00000049148.8 ENSMUSG00000049148 ENSMUST00000061925 Plcxd3 protein_coding Interval_95017 chr2 103084444 103084953 + 0 NA intron (ENSMUSG00000010911.12, intron 2 of 5) protein_coding-intron (ENSMUSG00000010911.12, intron 2 of 6) 1741 ENSMUSG00000010911.12 ENSMUSG00000010911 ENSMUST00000147131 Apip protein_coding Interval_164976 chr9 43560134 43560891 + 0 NA Intergenic Intergenic -44680 ENSMUSG00000111110.1 ENSMUSG00000111110 ENSMUST00000216439 Gm36855 lincRNA Interval_69131 chr16 90843327 90843754 + 0 NA intron (ENSMUSG00000116543.1, intron 1 of 3) protein_coding-intron (ENSMUSG00000039903.18, intron 1 of 7) 7423 ENSMUSG00000116543.1 ENSMUSG00000116543 ENSMUST00000232254 Gm36363 antisense Interval_116072 chr4 107407500 107407717 + 0 NA intron (ENSMUSG00000028614.14, intron 15 of 16) protein_coding-intron (ENSMUSG00000028614.14, intron 15 of 16) 26523 ENSMUSG00000028614.14 ENSMUSG00000028614 ENSMUST00000132950 Ndc1 protein_coding Interval_114717 chr4 84232115 84233304 + 0 NA Intergenic Intergenic 59221 ENSMUSG00000028487.18 ENSMUSG00000028487 ENSMUST00000176370 Bnc2 protein_coding Interval_14424 chr10 33463204 33463417 + 0 NA promoter-TSS (ENSMUSG00000111980.1) processed_pseudogene-promoter-TSS (ENSMUSG00000111980.1) -595 ENSMUSG00000111980.1 ENSMUSG00000111980 ENSMUST00000218168 Gm20304 processed_pseudogene Interval_80568 chr18 44300150 44300336 + 0 NA Intergenic Intergenic -15464 ENSMUSG00000117919.1 ENSMUSG00000117919 ENSMUST00000236086 Gm41717 lincRNA Interval_258 KZ289068.1 350618 351709 + 0 NA NA NA NA NA Interval_53368 chr14 56700276 56700870 + 0 NA intron (ENSMUSG00000097743.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000097743.1, intron 1 of 2) -1212 ENSMUSG00000097743.1 ENSMUSG00000097743 ENSMUST00000180682 Gm16973 lincRNA Interval_60226 chr15 68415160 68416054 + 0 NA Intergenic Intergenic -52431 ENSMUSG00000093387.1 ENSMUSG00000093387 ENSMUST00000175699 Gm20732 lincRNA Interval_132348 chr5 144371026 144371401 + 0 NA intron (ENSMUSG00000047843.16, intron 3 of 3) protein_coding-intron (ENSMUSG00000047843.16, intron 3 of 3) 13290 ENSMUSG00000104600.4 ENSMUSG00000104600 ENSMUST00000196370 Dmrt1i sense_intronic Interval_129529 chr5 120725460 120726791 + 0 NA Intergenic Intergenic 9450 ENSMUSG00000032690.16 ENSMUSG00000032690 ENSMUST00000146101 Oas2 protein_coding Interval_66586 chr16 35422021 35422996 + 0 NA intron (ENSMUSG00000022844.8, intron 11 of 16) protein_coding-intron (ENSMUSG00000022844.8, intron 11 of 16) -9333 ENSMUSG00000022844.8 ENSMUSG00000022844 ENSMUST00000231595 Pdia5 protein_coding Interval_5700 chr1 91037634 91037826 + 0 NA intron (ENSMUSG00000026305.15, intron 1 of 12) protein_coding-intron (ENSMUSG00000026305.15, intron 1 of 12) -15856 ENSMUSG00000026305.15 ENSMUSG00000026305 ENSMUST00000187532 Lrrfip1 protein_coding Interval_37010 chr12 56325134 56325416 + 0 NA Intergenic Intergenic 20560 ENSMUSG00000021028.8 ENSMUSG00000021028 ENSMUST00000218118 Mbip protein_coding Interval_129111 chr5 117470841 117471164 + 0 NA intron (ENSMUSG00000061578.8, intron 1 of 20) protein_coding-intron (ENSMUSG00000061578.8, intron 1 of 3) -49697 ENSMUSG00000107199.1 ENSMUSG00000107199 ENSMUST00000201553 Gm42550 TEC Interval_26442 chr11 57876090 57876618 + 0 NA Intergenic Intergenic -4542 ENSMUSG00000084223.1 ENSMUSG00000084223 ENSMUST00000119500 Gm12244 processed_pseudogene Interval_64164 chr16 8788082 8788961 + 0 NA intron (ENSMUSG00000022710.17, intron 1 of 31) protein_coding-intron (ENSMUSG00000022710.17, intron 1 of 31) -22245 ENSMUSG00000084737.1 ENSMUSG00000084737 ENSMUST00000122788 Gm25805 snRNA Interval_78992 chr18 23751572 23754529 + 0 NA promoter-TSS (ENSMUSG00000024277.14) protein_coding-promoter-TSS (ENSMUSG00000024277.14) 717 ENSMUSG00000024277.14 ENSMUSG00000024277 ENSMUST00000165387 Mapre2 protein_coding Interval_166649 chr9 61607217 61607883 + 0 NA Intergenic Intergenic 97827 ENSMUSG00000111381.1 ENSMUSG00000111381 ENSMUST00000213400 Gm34424 transcribed_processed_pseudogene Interval_91329 chr2 37795941 37796493 + 0 NA intron (ENSMUSG00000035403.10, intron 1 of 1) protein_coding-intron (ENSMUSG00000035403.10, intron 12 of 12) 5046 ENSMUSG00000035403.10 ENSMUSG00000035403 ENSMUST00000137693 Crb2 protein_coding Interval_160762 chr8 111996310 111996520 + 0 NA intron (ENSMUSG00000031948.14, intron 14 of 15) protein_coding-intron (ENSMUSG00000031948.14, intron 12 of 13) -4113 ENSMUSG00000031949.17 ENSMUSG00000031949 ENSMUST00000120457 Adat1 protein_coding Interval_169855 chr9 102521234 102522217 + 0 NA intron (ENSMUSG00000035606.8, intron 1 of 4) protein_coding-intron (ENSMUSG00000035606.8, intron 4 of 10) 389 ENSMUSG00000035606.8 ENSMUSG00000035606 ENSMUST00000190609 Ky protein_coding Interval_15665 chr10 53299143 53299435 + 0 NA exon (ENSMUSG00000112239.1, exon 1 of 1) processed_pseudogene-exon (ENSMUSG00000112239.1, exon 1 of 1) 853 ENSMUSG00000112239.1 ENSMUSG00000112239 ENSMUST00000217830 Gm17823 processed_pseudogene Interval_42767 chr13 19236134 19236738 + 0 NA Intergenic Intergenic -6409 ENSMUSG00000076750.6 ENSMUSG00000076750 ENSMUST00000103559 Trgv3 TR_V_gene Interval_62307 chr15 89591416 89592701 + 0 NA promoter-TSS (ENSMUSG00000022621.16) protein_coding-promoter-TSS (ENSMUSG00000022621.16) -7516 ENSMUSG00000022621.16 ENSMUSG00000022621 ENSMUST00000171142 Rabl2 protein_coding Interval_79658 chr18 34298808 34299152 + 0 NA promoter-TSS (ENSMUSG00000005871.15) protein_coding-promoter-TSS (ENSMUSG00000005871.15) -32196 ENSMUSG00000014504.16 ENSMUSG00000014504 ENSMUST00000142010 Srp19 protein_coding Interval_123074 chr5 29421262 29422108 + 0 NA Intergenic Intergenic -19633 ENSMUSG00000001569.10 ENSMUSG00000001569 ENSMUST00000146347 Nom1 protein_coding Interval_10047 chr1 165332363 165333066 + 0 NA intron (ENSMUSG00000026571.12, intron 6 of 6) protein_coding-intron (ENSMUSG00000026571.12, intron 18 of 18) 36925 ENSMUSG00000040836.15 ENSMUSG00000040836 ENSMUST00000111450 Gpr161 protein_coding Interval_23054 chr11 19428037 19428773 + 0 NA Intergenic Intergenic 44720 ENSMUSG00000082737.3 ENSMUSG00000082737 ENSMUST00000120961 Gm12026 processed_pseudogene Interval_142411 chr6 141729140 141729444 + 0 NA intron (ENSMUSG00000084927.1, intron 8 of 13) protein_coding-intron (ENSMUSG00000084927.1, intron 8 of 13) -14201 ENSMUSG00000088865.1 ENSMUSG00000088865 ENSMUST00000158240 Gm23069 misc_RNA Interval_66816 chr16 37843327 37843857 + 0 NA Intergenic Intergenic -11190 ENSMUSG00000084602.1 ENSMUSG00000084602 ENSMUST00000122653 n-R5s34 rRNA Interval_50551 chr14 14985007 14985813 + 0 NA intron (ENSMUSG00000042567.20, intron 31 of 35) protein_coding-intron (ENSMUSG00000042567.20, intron 30 of 34) 56759 ENSMUSG00000114542.1 ENSMUSG00000114542 ENSMUST00000224124 Gm18142 processed_pseudogene Interval_93068 chr2 69910134 69910341 + 0 NA intron (ENSMUSG00000044308.17, intron 1 of 7) protein_coding-intron (ENSMUSG00000044308.17, intron 1 of 38) 24509 ENSMUSG00000085735.1 ENSMUSG00000085735 ENSMUST00000129114 Mettl5os antisense Interval_9885 chr1 163798789 163799102 + 0 NA intron (ENSMUSG00000026585.13, intron 5 of 20) protein_coding-intron (ENSMUSG00000026585.13, intron 5 of 19) 19362 ENSMUSG00000026585.13 ENSMUSG00000026585 ENSMUST00000027877 Kifap3 protein_coding Interval_96772 chr2 128031372 128032759 + 0 NA intron (ENSMUSG00000027380.10, intron 5 of 10) protein_coding-intron (ENSMUSG00000027380.10, intron 12 of 17) -57859 ENSMUSG00000088175.1 ENSMUSG00000088175 ENSMUST00000157550 Gm23101 snRNA Interval_137526 chr6 72887006 72888002 + 0 NA intron (ENSMUSG00000055239.10, intron 1 of 3) protein_coding-intron (ENSMUSG00000055239.10, intron 1 of 6) 8415 ENSMUSG00000107610.1 ENSMUSG00000107610 ENSMUST00000205107 D530018E20Rik TEC Interval_64647 chr16 13867392 13868582 + 0 NA intron (ENSMUSG00000022680.14, intron 8 of 22) protein_coding-intron (ENSMUSG00000022680.14, intron 8 of 23) 34995 ENSMUSG00000022680.14 ENSMUSG00000022680 ENSMUST00000137715 Pdxdc1 protein_coding Interval_56168 chr14 109771896 109772480 + 0 NA Intergenic Intergenic 110995 ENSMUSG00000089119.1 ENSMUSG00000089119 ENSMUST00000158494 Gm25901 snoRNA Interval_4556 chr1 74988854 74989227 + 0 NA intron (ENSMUSG00000026162.7, intron 2 of 4) protein_coding-intron (ENSMUSG00000026162.7, intron 2 of 4) 34788 ENSMUSG00000103145.1 ENSMUSG00000103145 ENSMUST00000194616 Gm37744 TEC Interval_95081 chr2 103750795 103751754 + 0 NA intron (ENSMUSG00000027185.15, intron 5 of 11) protein_coding-intron (ENSMUSG00000027185.15, intron 5 of 28) 9921 ENSMUSG00000027185.15 ENSMUSG00000027185 ENSMUST00000148798 Nat10 protein_coding Interval_61132 chr15 79438671 79439169 + 0 NA promoter-TSS (ENSMUSG00000022433.20) protein_coding-promoter-TSS (ENSMUSG00000022433.20) 3216 ENSMUSG00000022433.20 ENSMUSG00000022433 ENSMUST00000156043 Csnk1e protein_coding Interval_95766 chr2 115985326 115985699 + 0 NA intron (ENSMUSG00000027210.20, intron 3 of 3) protein_coding-intron (ENSMUSG00000027210.20, intron 8 of 11) 81932 ENSMUSG00000086328.1 ENSMUSG00000086328 ENSMUST00000140185 2700033N17Rik lincRNA Interval_101152 chr2 178541822 178542230 + 0 NA Intergenic Intergenic 81396 ENSMUSG00000039155.15 ENSMUSG00000039155 ENSMUST00000176869 Cdh26 protein_coding Interval_97735 chr2 143630954 143632080 + 0 NA intron (ENSMUSG00000027419.9, intron 2 of 11) protein_coding-intron (ENSMUSG00000027419.9, intron 2 of 11) 85246 ENSMUSG00000027419.9 ENSMUSG00000027419 ENSMUST00000124751 Pcsk2 protein_coding Interval_111643 chr4 25061802 25062549 + 0 NA intron (ENSMUSG00000085885.1, intron 2 of 4) processed_transcript-intron (ENSMUSG00000085885.1, intron 2 of 4) -94726 ENSMUSG00000046219.9 ENSMUSG00000046219 ENSMUST00000139588 C230012O17Rik processed_transcript Interval_98038 chr2 147032741 147033814 + 0 NA intron (ENSMUSG00000027433.5, intron 2 of 4) protein_coding-intron (ENSMUSG00000027433.5, intron 13 of 29) 3725 ENSMUSG00000027433.5 ENSMUSG00000027433 ENSMUST00000137358 Xrn2 protein_coding Interval_110116 chr3 153441828 153442308 + 0 NA intron (ENSMUSG00000052544.9, intron 1 of 2) protein_coding-intron (ENSMUSG00000052544.9, intron 1 of 2) 32586 ENSMUSG00000104964.1 ENSMUSG00000104964 ENSMUST00000196286 4930597L12Rik TEC Interval_13345 chr10 16237699 16238042 + 0 NA Intergenic Intergenic -126928 ENSMUSG00000112602.1 ENSMUSG00000112602 ENSMUST00000218710 Gm18557 processed_pseudogene Interval_21507 chr10 128989823 128991144 + 0 NA exon (ENSMUSG00000069430.3, exon 1 of 1) protein_coding-exon (ENSMUSG00000069430.3, exon 1 of 1) 1052 ENSMUSG00000069430.3 ENSMUSG00000069430 ENSMUST00000091996 Olfr9 protein_coding Interval_120724 chr4 150275375 150275606 + 0 NA Intergenic Intergenic 28030 ENSMUSG00000063524.13 ENSMUSG00000063524 ENSMUST00000136310 Eno1 protein_coding Interval_156110 chr8 44847206 44847430 + 0 NA Intergenic Intergenic 87841 ENSMUSG00000110409.1 ENSMUSG00000110409 ENSMUST00000211534 Gm9908 bidirectional_promoter_lncRNA Interval_154930 chr8 25129241 25129492 + 0 NA Intergenic Intergenic -24698 ENSMUSG00000109684.1 ENSMUSG00000109684 ENSMUST00000211447 Gm45745 TEC Interval_19716 chr10 108274445 108274931 + 0 NA intron (ENSMUSG00000019907.10, intron 4 of 4) protein_coding-intron (ENSMUSG00000019907.10, intron 25 of 25) 25094 ENSMUSG00000019907.10 ENSMUSG00000019907 ENSMUST00000219559 Ppp1r12a protein_coding Interval_102903 chr3 32684751 32684967 + 0 NA Intergenic Intergenic -21439 ENSMUSG00000027671.14 ENSMUSG00000027671 ENSMUST00000153779 Actl6a protein_coding Interval_107783 chr3 114544486 114545387 + 0 NA promoter-TSS (ENSMUSG00000106452.1) processed_pseudogene-promoter-TSS (ENSMUSG00000106452.1) -164 ENSMUSG00000106452.1 ENSMUSG00000106452 ENSMUST00000199345 Gm43749 processed_pseudogene Interval_120486 chr4 148912984 148913841 + 0 NA TTS (ENSMUSG00000086766.1) antisense-TTS (ENSMUSG00000086766.1) 912 ENSMUSG00000086766.1 ENSMUSG00000086766 ENSMUST00000151967 Gm15969 antisense Interval_150911 chr7 116300316 116302154 + 0 NA intron (ENSMUSG00000045659.18, intron 3 of 18) protein_coding-intron (ENSMUSG00000045659.18, intron 3 of 26) -18492 ENSMUSG00000108650.1 ENSMUSG00000108650 ENSMUST00000205675 Gm44867 sense_intronic Interval_84427 chr19 10830699 10831929 + 0 NA Intergenic Intergenic -1388 ENSMUSG00000024670.17 ENSMUSG00000024670 ENSMUST00000236355 Cd6 protein_coding Interval_43074 chr13 23610029 23610725 + 0 NA intron (ENSMUSG00000047246.7, intron 1 of 1) protein_coding-intron (ENSMUSG00000047246.7, intron 1 of 1) 10672 ENSMUSG00000080741.3 ENSMUSG00000080741 ENSMUST00000120330 Gm11398 transcribed_unprocessed_pseudogene Interval_94194 chr2 85006409 85006722 + 0 NA intron (ENSMUSG00000027071.14, intron 7 of 10) protein_coding-intron (ENSMUSG00000027071.14, intron 8 of 11) 18350 ENSMUSG00000027072.13 ENSMUSG00000027072 ENSMUST00000028466 Prg3 protein_coding Interval_155508 chr8 33985417 33986053 + 0 NA promoter-TSS (ENSMUSG00000110663.1) lincRNA-promoter-TSS (ENSMUSG00000110663.1) -179 ENSMUSG00000110663.1 ENSMUSG00000110663 ENSMUST00000212322 Gm39157 lincRNA Interval_147465 chr7 67514893 67515779 + 0 NA intron (ENSMUSG00000030556.13, intron 5 of 5) protein_coding-intron (ENSMUSG00000030556.13, intron 9 of 9) 55367 ENSMUSG00000087926.1 ENSMUSG00000087926 ENSMUST00000157301 Gm23233 snoRNA Interval_133508 chr6 6038547 6040159 + 0 NA Intergenic Intergenic -61960 ENSMUSG00000085416.1 ENSMUSG00000085416 ENSMUST00000130004 1700019G24Rik antisense Interval_160379 chr8 108827098 108828112 + 0 NA intron (ENSMUSG00000038872.10, intron 9 of 15) protein_coding-intron (ENSMUSG00000038872.10, intron 3 of 9) -39957 ENSMUSG00000102989.1 ENSMUSG00000102989 ENSMUST00000195769 Gm38318 TEC Interval_64806 chr16 15998784 15999056 + 0 NA intron (ENSMUSG00000041974.10, intron 8 of 16) protein_coding-intron (ENSMUSG00000041974.10, intron 8 of 19) 12089 ENSMUSG00000077350.1 ENSMUSG00000077350 ENSMUST00000104162 n-R5s31 rRNA Interval_158762 chr8 85997744 85998086 + 0 NA intron (ENSMUSG00000036879.15, intron 15 of 31) protein_coding-intron (ENSMUSG00000036879.15, intron 15 of 31) 3670 ENSMUSG00000098439.1 ENSMUSG00000098439 ENSMUST00000183645 Hm629797 sense_intronic Interval_54183 chr14 66044227 66045160 + 0 NA promoter-TSS (ENSMUSG00000068165.3) processed_pseudogene-promoter-TSS (ENSMUSG00000068165.3) -387 ENSMUSG00000068165.3 ENSMUSG00000068165 ENSMUST00000089275 Gm10233 processed_pseudogene Interval_52754 chr14 49390962 49391619 + 0 NA intron (ENSMUSG00000021852.14, intron 1 of 2) protein_coding-intron (ENSMUSG00000021852.14, intron 1 of 7) 91454 ENSMUSG00000115096.1 ENSMUSG00000115096 ENSMUST00000228016 Gm48940 antisense Interval_131969 chr5 141543278 141543912 + 0 NA intron (ENSMUSG00000039683.16, intron 1 of 9) protein_coding-intron (ENSMUSG00000039683.16, intron 1 of 44) 22654 ENSMUSG00000089164.1 ENSMUSG00000089164 ENSMUST00000158539 Gm24131 snRNA Interval_139714 chr6 107996604 107996811 + 0 NA Intergenic Intergenic -68355 ENSMUSG00000034639.7 ENSMUSG00000034639 ENSMUST00000138140 Setmar protein_coding Interval_5910 chr1 93174310 93174790 + 0 NA intron (ENSMUSG00000084989.3, intron 1 of 31) protein_coding-intron (ENSMUSG00000084989.3, intron 1 of 31) 5825 ENSMUSG00000084989.3 ENSMUSG00000084989 ENSMUST00000138595 Crocc2 protein_coding Interval_25660 chr11 50501509 50501722 + 0 NA Intergenic Intergenic 9562 ENSMUSG00000089366.1 ENSMUSG00000089366 ENSMUST00000158741 Gm23824 misc_RNA Interval_43968 chr13 38527021 38528960 + 0 NA promoter-TSS (ENSMUSG00000038991.17) protein_coding-promoter-TSS (ENSMUSG00000038991.17) 587 ENSMUSG00000114638.1 ENSMUSG00000114638 ENSMUST00000224471 Gm31834 antisense Interval_164504 chr9 37517405 37517981 + 0 NA intron (ENSMUSG00000042138.9, intron 2 of 3) protein_coding-intron (ENSMUSG00000042138.9, intron 2 of 3) -16945 ENSMUSG00000001946.14 ENSMUSG00000001946 ENSMUST00000131832 Esam protein_coding Interval_145562 chr7 35631183 35632453 + 0 NA intron (ENSMUSG00000034867.16, intron 25 of 26) protein_coding-intron (ENSMUSG00000034867.16, intron 25 of 28) 11226 ENSMUSG00000030417.15 ENSMUSG00000030417 ENSMUST00000130340 Pdcd5 protein_coding Interval_127405 chr5 103758310 103758627 + 0 NA intron (ENSMUSG00000029313.18, intron 1 of 12) protein_coding-intron (ENSMUSG00000029313.18, intron 1 of 19) 3904 ENSMUSG00000029313.18 ENSMUSG00000029313 ENSMUST00000152145 Aff1 protein_coding Interval_9181 chr1 154796631 154797118 + 0 NA intron (ENSMUSG00000004110.17, intron 1 of 3) protein_coding-intron (ENSMUSG00000004110.17, intron 1 of 3) 20067 ENSMUSG00000004110.17 ENSMUSG00000004110 ENSMUST00000186256 Cacna1e protein_coding Interval_108970 chr3 133709349 133709592 + 0 NA Intergenic Intergenic -46079 ENSMUSG00000105952.1 ENSMUSG00000105952 ENSMUST00000197904 Gm40153 lincRNA Interval_130200 chr5 124890955 124892406 + 0 NA intron (ENSMUSG00000079215.8, intron 3 of 3) protein_coding-intron (ENSMUSG00000079215.8, intron 3 of 3) 17528 ENSMUSG00000079215.8 ENSMUSG00000079215 ENSMUST00000134473 Zfp664 protein_coding Interval_127448 chr5 104021617 104022695 + 0 NA promoter-TSS (ENSMUSG00000029311.16) protein_coding-promoter-TSS (ENSMUSG00000029311.16) -318 ENSMUSG00000029311.16 ENSMUSG00000029311 ENSMUST00000119025 Hsd17b11 protein_coding Interval_128956 chr5 116309303 116309605 + 0 NA promoter-TSS (ENSMUSG00000084921.1) lincRNA-promoter-TSS (ENSMUSG00000084921.1) -94 ENSMUSG00000084921.1 ENSMUSG00000084921 ENSMUST00000132130 Gm13838 lincRNA Interval_16294 chr10 62024143 62024335 + 0 NA exon (ENSMUSG00000112018.1, exon 1 of 1) TEC-exon (ENSMUSG00000112018.1, exon 1 of 1) 835 ENSMUSG00000112018.1 ENSMUSG00000112018 ENSMUST00000220135 Gm47919 TEC Interval_40402 chr12 104660039 104660823 + 0 NA Intergenic Intergenic 61621 ENSMUSG00000041415.10 ENSMUSG00000041415 ENSMUST00000222002 Dicer1 protein_coding Interval_58857 chr15 39228408 39229339 + 0 NA intron (ENSMUSG00000037386.16, intron 1 of 25) protein_coding-intron (ENSMUSG00000037386.16, intron 1 of 26) 48362 ENSMUSG00000098021.2 ENSMUSG00000098021 ENSMUST00000182394 Gm9522 processed_pseudogene Interval_90979 chr2 33892919 33893405 + 0 NA Intergenic Intergenic 48983 ENSMUSG00000085987.2 ENSMUSG00000085987 ENSMUST00000134271 Gm13403 lincRNA Interval_63778 chr15 103363883 103364390 + 0 NA intron (ENSMUSG00000000555.8, intron 1 of 30) protein_coding-intron (ENSMUSG00000000555.8, intron 1 of 29) -12758 ENSMUSG00000000555.8 ENSMUSG00000000555 ENSMUST00000230460 Itga5 protein_coding Interval_93298 chr2 71758701 71759791 + 0 NA exon (ENSMUSG00000084794.1, exon 2 of 2) processed_transcript-exon (ENSMUSG00000084794.1, exon 2 of 2) 3521 ENSMUSG00000081878.1 ENSMUSG00000081878 ENSMUST00000118020 Gm13739 processed_pseudogene Interval_48492 chr13 99413823 99414665 + 0 NA intron (ENSMUSG00000041632.7, intron 10 of 10) protein_coding-intron (ENSMUSG00000041632.7, intron 10 of 10) -1580 ENSMUSG00000097828.2 ENSMUSG00000097828 ENSMUST00000225937 6430562O15Rik processed_transcript Interval_43542 chr13 32924712 32925286 + 0 NA Intergenic Intergenic 13692 ENSMUSG00000074973.4 ENSMUSG00000074973 ENSMUST00000140484 Gm11382 unprocessed_pseudogene Interval_90134 chr2 28452921 28453404 + 0 NA exon (ENSMUSG00000035829.13, exon 3 of 3) protein_coding-exon (ENSMUSG00000035829.13, exon 3 of 3) 5221 ENSMUSG00000035829.13 ENSMUSG00000035829 ENSMUST00000040324 Ppp1r26 protein_coding Interval_56253 chr14 115030149 115030409 + 0 NA Intergenic Intergenic -12600 ENSMUSG00000089726.2 ENSMUSG00000089726 ENSMUST00000134140 Mir17hg lincRNA Interval_53913 chr14 63357404 63358417 + 0 NA Intergenic Intergenic 18508 ENSMUSG00000014453.4 ENSMUSG00000014453 ENSMUST00000224965 Blk protein_coding Interval_20500 chr10 117990279 117990651 + 0 NA Intergenic Intergenic -14473 ENSMUSG00000102896.1 ENSMUSG00000102896 ENSMUST00000193027 Gm37852 TEC Interval_8073 chr1 135563875 135565413 + 0 NA intron (ENSMUSG00000009418.16, intron 4 of 30) protein_coding-intron (ENSMUSG00000009418.16, intron 1 of 29) -20129 ENSMUSG00000054412.5 ENSMUSG00000054412 ENSMUST00000067468 Gm4793 antisense Interval_83000 chr18 80269141 80270343 + 0 NA intron (ENSMUSG00000034006.17, intron 4 of 4) protein_coding-intron (ENSMUSG00000034006.17, intron 3 of 4) 16400 ENSMUSG00000034006.17 ENSMUSG00000034006 ENSMUST00000155039 Slc66a2 protein_coding Interval_159433 chr8 94612185 94612543 + 0 NA exon (ENSMUSG00000110504.1, exon 1 of 1) TEC-exon (ENSMUSG00000110504.1, exon 1 of 1) 1587 ENSMUSG00000110504.1 ENSMUSG00000110504 ENSMUST00000212759 Gm45797 TEC Interval_160445 chr8 109547122 109547521 + 0 NA TTS (ENSMUSG00000037993.8) protein_coding-TTS (ENSMUSG00000037993.8) 4803 ENSMUSG00000037993.8 ENSMUSG00000037993 ENSMUST00000212667 Dhx38 protein_coding Interval_45593 chr13 56127597 56128267 + 0 NA intron (ENSMUSG00000015937.15, intron 2 of 3) protein_coding-intron (ENSMUSG00000015937.15, intron 2 of 8) 8429 ENSMUSG00000015937.15 ENSMUSG00000015937 ENSMUST00000154564 Macroh2a1 protein_coding Interval_151170 chr7 118962225 118962656 + 0 NA intron (ENSMUSG00000073856.11, intron 7 of 7) protein_coding-intron (ENSMUSG00000073856.11, intron 8 of 8) 7246 ENSMUSG00000109517.1 ENSMUSG00000109517 ENSMUST00000208287 Gm44763 antisense Interval_80316 chr18 39124394 39125168 + 0 NA intron (ENSMUSG00000036452.18, intron 8 of 22) protein_coding-intron (ENSMUSG00000036452.18, intron 8 of 22) -130589 ENSMUSG00000086991.1 ENSMUSG00000086991 ENSMUST00000131421 Gm15334 antisense Interval_104516 chr3 67196929 67197366 + 0 NA intron (ENSMUSG00000034544.17, intron 5 of 8) protein_coding-intron (ENSMUSG00000034544.17, intron 4 of 8) 141189 ENSMUSG00000065245.1 ENSMUSG00000065245 ENSMUST00000083311 Gm22295 snRNA Interval_97107 chr2 131275959 131276880 + 0 NA intron (ENSMUSG00000037514.17, intron 2 of 3) protein_coding-intron (ENSMUSG00000037514.17, intron 2 of 4) -11633 ENSMUSG00000065563.1 ENSMUSG00000065563 ENSMUST00000083629 Mir103-2 miRNA Interval_11928 chr1 187241281 187241528 + 0 NA intron (ENSMUSG00000039210.16, intron 6 of 6) protein_coding-intron (ENSMUSG00000039210.16, intron 5 of 9) 4947 ENSMUSG00000104394.2 ENSMUSG00000104394 ENSMUST00000193542 Gm37254 TEC Interval_34568 chr12 5213878 5214213 + 0 NA intron (ENSMUSG00000020627.10, intron 1 of 11) protein_coding-intron (ENSMUSG00000020627.10, intron 2 of 13) 21919 ENSMUSG00000112020.1 ENSMUSG00000112020 ENSMUST00000219031 Gm48532 TEC Interval_24613 chr11 35253316 35253635 + 0 NA intron (ENSMUSG00000056427.10, intron 2 of 3) protein_coding-intron (ENSMUSG00000056427.10, intron 4 of 35) 39074 ENSMUSG00000088125.1 ENSMUSG00000088125 ENSMUST00000157500 Gm26070 snoRNA Interval_49392 chr13 111643179 111644278 + 0 NA TTS (ENSMUSG00000086649.1) processed_transcript-TTS (ENSMUSG00000086649.1) -42605 ENSMUSG00000032727.14 ENSMUSG00000032727 ENSMUST00000232398 Mier3 protein_coding Interval_120756 chr4 150477892 150478658 + 0 NA intron (ENSMUSG00000039852.17, intron 7 of 22) protein_coding-intron (ENSMUSG00000039852.17, intron 7 of 22) 90269 ENSMUSG00000085213.1 ENSMUSG00000085213 ENSMUST00000128800 Gm13091 antisense Interval_66907 chr16 38451986 38453191 + 0 NA promoter-TSS (ENSMUSG00000002844.9) protein_coding-promoter-TSS (ENSMUSG00000002844.9) 94 ENSMUSG00000002844.9 ENSMUSG00000002844 ENSMUST00000232145 Adprh protein_coding Interval_88371 chr2 4521896 4522092 + 0 NA intron (ENSMUSG00000026657.17, intron 8 of 24) protein_coding-intron (ENSMUSG00000026657.17, intron 7 of 23) -55324 ENSMUSG00000086874.1 ENSMUSG00000086874 ENSMUST00000139479 Gm13175 antisense Interval_96855 chr2 128966993 128968221 + 0 NA exon (ENSMUSG00000074807.3, exon 1 of 1) antisense-exon (ENSMUSG00000074807.3, exon 1 of 1) 205 ENSMUSG00000042851.17 ENSMUSG00000042851 ENSMUST00000110319 Zc3h6 protein_coding Interval_93470 chr2 73322570 73323545 + 0 NA intron (ENSMUSG00000008226.14, intron 4 of 4) protein_coding-intron (ENSMUSG00000008226.14, intron 5 of 7) 10398 ENSMUSG00000008226.14 ENSMUSG00000008226 ENSMUST00000123621 Scrn3 protein_coding Interval_168205 chr9 77954610 77955973 + 0 NA intron (ENSMUSG00000032349.13, intron 1 of 2) protein_coding-intron (ENSMUSG00000032349.13, intron 1 of 7) -37308 ENSMUSG00000111610.1 ENSMUSG00000111610 ENSMUST00000216017 Gm34829 lincRNA Interval_163886 chr9 27617430 27617636 + 0 NA intron (ENSMUSG00000110851.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000110851.1, intron 1 of 1) 1348 ENSMUSG00000110851.1 ENSMUSG00000110851 ENSMUST00000213224 Gm48902 lincRNA Interval_125013 chr5 63867193 63867803 + 0 NA intron (ENSMUSG00000060512.7, intron 1 of 4) protein_coding-intron (ENSMUSG00000060512.7, intron 1 of 3) -9978 ENSMUSG00000060512.7 ENSMUSG00000060512 ENSMUST00000199667 0610040J01Rik protein_coding Interval_140636 chr6 120243492 120243680 + 0 NA promoter-TSS (ENSMUSG00000041372.10) protein_coding-promoter-TSS (ENSMUSG00000041372.10) 50973 ENSMUSG00000041372.10 ENSMUSG00000041372 ENSMUST00000212457 B4galnt3 protein_coding Interval_158432 chr8 83698065 83699527 + 0 NA intron (ENSMUSG00000057672.16, intron 1 of 21) protein_coding-intron (ENSMUSG00000057672.16, intron 1 of 21) -16476 ENSMUSG00000005481.18 ENSMUSG00000005481 ENSMUST00000138789 Ddx39 protein_coding Interval_67754 chr16 56873548 56874835 + 0 NA intron (ENSMUSG00000022754.6, intron 1 of 5) protein_coding-intron (ENSMUSG00000022754.6, intron 1 of 5) -6476 ENSMUSG00000022754.6 ENSMUSG00000022754 ENSMUST00000135672 Tmem45a protein_coding Interval_99337 chr2 159345831 159346779 + 0 NA Intergenic Intergenic 110152 ENSMUSG00000083913.1 ENSMUSG00000083913 ENSMUST00000120414 Gm14219 processed_pseudogene Interval_148177 chr7 79653785 79655436 + 0 NA Intergenic Intergenic -16311 ENSMUSG00000046591.10 ENSMUSG00000046591 ENSMUST00000206677 Ticrr protein_coding Interval_44826 chr13 48941568 48942881 + 0 NA intron (ENSMUSG00000038014.7, intron 3 of 17) protein_coding-intron (ENSMUSG00000038014.7, intron 3 of 17) 25793 ENSMUSG00000038014.7 ENSMUSG00000038014 ENSMUST00000060805 Fam120a protein_coding Interval_83095 chr18 81225927 81226623 + 0 NA TTS (ENSMUSG00000097181.1) lincRNA-TTS (ENSMUSG00000097181.1) 9791 ENSMUSG00000097181.1 ENSMUSG00000097181 ENSMUST00000181204 4930594M17Rik lincRNA Interval_149079 chr7 92937846 92938430 + 0 NA Intergenic Intergenic 35959 ENSMUSG00000109268.1 ENSMUSG00000109268 ENSMUST00000208883 9530078K11Rik TEC Interval_142155 chr6 137669138 137670305 + 0 NA Intergenic Intergenic -75319 ENSMUSG00000030224.10 ENSMUSG00000030224 ENSMUST00000137235 Strap protein_coding Interval_11087 chr1 179250021 179251000 + 0 NA intron (ENSMUSG00000055067.15, intron 5 of 11) protein_coding-intron (ENSMUSG00000055067.15, intron 5 of 11) 267495 ENSMUSG00000055067.15 ENSMUSG00000055067 ENSMUST00000194237 Smyd3 protein_coding Interval_165858 chr9 53868790 53869090 + 0 NA Intergenic Intergenic -15144 ENSMUSG00000059830.3 ENSMUSG00000059830 ENSMUST00000077997 Gm16380 processed_pseudogene Interval_78387 chr18 12383516 12385199 + 0 NA intron (ENSMUSG00000024421.16, intron 2 of 74) protein_coding-intron (ENSMUSG00000024421.16, intron 2 of 74) 18558 ENSMUSG00000099663.1 ENSMUSG00000099663 ENSMUST00000189120 Gm29201 processed_pseudogene Interval_128059 chr5 110569231 110569904 + 0 NA intron (ENSMUSG00000033316.14, intron 1 of 10) protein_coding-intron (ENSMUSG00000033316.14, intron 1 of 10) -33954 ENSMUSG00000033316.14 ENSMUSG00000033316 ENSMUST00000165856 Galnt9 protein_coding Interval_26532 chr11 58508784 58509433 + 0 NA exon (ENSMUSG00000085342.1, exon 1 of 1) processed_pseudogene-exon (ENSMUSG00000085342.1, exon 1 of 1) 153 ENSMUSG00000085342.1 ENSMUSG00000085342 ENSMUST00000134617 Gm12254 processed_pseudogene Interval_82990 chr18 80206360 80207446 + 0 NA promoter-TSS (ENSMUSG00000024571.15) protein_coding-promoter-TSS (ENSMUSG00000024571.15) 108 ENSMUSG00000057130.12 ENSMUSG00000057130 ENSMUST00000130675 Txnl4a protein_coding Interval_122484 chr5 23386435 23387522 + 0 NA promoter-TSS (ENSMUSG00000106269.1) lincRNA-promoter-TSS (ENSMUSG00000106269.1) -131 ENSMUSG00000106269.1 ENSMUSG00000106269 ENSMUST00000197377 4930580E04Rik lincRNA Interval_46656 chr13 68212046 68212275 + 0 NA Intergenic Intergenic 30866 ENSMUSG00000113342.1 ENSMUSG00000113342 ENSMUST00000221571 AA414992 TEC Interval_66639 chr16 35799376 35800917 + 0 NA intron (ENSMUSG00000022849.5, intron 2 of 2) protein_coding-intron (ENSMUSG00000022849.5, intron 2 of 8) 8800 ENSMUSG00000097914.1 ENSMUSG00000097914 ENSMUST00000180485 Gm26838 antisense Interval_30295 chr11 93123446 93123737 + 0 NA intron (ENSMUSG00000056158.14, intron 1 of 8) protein_coding-intron (ENSMUSG00000056158.14, intron 2 of 9) 25563 ENSMUSG00000056158.14 ENSMUSG00000056158 ENSMUST00000107863 Car10 protein_coding Interval_147215 chr7 64695523 64695950 + 0 NA TTS (ENSMUSG00000030519.14) protein_coding-TTS (ENSMUSG00000030519.14) -48847 ENSMUSG00000030519.14 ENSMUSG00000030519 ENSMUST00000206630 Apba2 protein_coding Interval_87180 chr19 46656186 46658331 + 0 NA exon (ENSMUSG00000047731.17, exon 5 of 5) protein_coding-exon (ENSMUSG00000047731.17, exon 5 of 5) 8868 ENSMUSG00000118040.1 ENSMUSG00000118040 ENSMUST00000238131 Gm36602 lincRNA Interval_143592 chr7 13013897 13015026 + 0 NA intron (ENSMUSG00000005566.14, intron 1 of 6) protein_coding-intron (ENSMUSG00000005566.14, intron 1 of 6) -4661 ENSMUSG00000049600.8 ENSMUSG00000049600 ENSMUST00000210108 Zbtb45 protein_coding Interval_143540 chr7 12345833 12346263 + 0 NA Intergenic Intergenic 12959 ENSMUSG00000096314.1 ENSMUSG00000096314 ENSMUST00000177845 Gm23521 miRNA Interval_26686 chr11 59715521 59715754 + 0 NA intron (ENSMUSG00000005417.17, intron 3 of 3) protein_coding-intron (ENSMUSG00000005417.17, intron 3 of 22) 24517 ENSMUSG00000086330.7 ENSMUSG00000086330 ENSMUST00000153431 1700007J10Rik processed_transcript Interval_114082 chr4 63263162 63263474 + 0 NA intron (ENSMUSG00000045672.15, intron 9 of 57) protein_coding-intron (ENSMUSG00000045672.15, intron 12 of 60) 6467 ENSMUSG00000070102.1 ENSMUSG00000070102 ENSMUST00000093594 Mir455 miRNA Interval_6758 chr1 119299554 119300409 + 0 NA Intergenic Intergenic 26852 ENSMUSG00000099860.1 ENSMUSG00000099860 ENSMUST00000189894 Gm29456 lincRNA Interval_161694 chr8 122093347 122093770 + 0 NA intron (ENSMUSG00000092329.1, intron 1 of 15) protein_coding-intron (ENSMUSG00000092329.1, intron 1 of 15) 115534 ENSMUSG00000099140.1 ENSMUSG00000099140 ENSMUST00000184699 Mir7237 miRNA Interval_86333 chr19 38818792 38819799 + 0 NA promoter-TSS (ENSMUSG00000024999.7) protein_coding-promoter-TSS (ENSMUSG00000024999.7) -58 ENSMUSG00000024999.7 ENSMUSG00000024999 ENSMUST00000025963 Noc3l protein_coding Interval_25388 chr11 47177497 47177731 + 0 NA intron (ENSMUSG00000020354.15, intron 3 of 6) protein_coding-intron (ENSMUSG00000020354.15, intron 3 of 7) 303201 ENSMUSG00000082818.1 ENSMUSG00000082818 ENSMUST00000122081 Gm12175 processed_pseudogene Interval_60000 chr15 63649930 63650626 + 0 NA intron (ENSMUSG00000115520.2, intron 2 of 8) lincRNA-intron (ENSMUSG00000115520.2, intron 2 of 8) 18581 ENSMUSG00000095812.1 ENSMUSG00000095812 ENSMUST00000179326 Gm5473 processed_pseudogene Interval_102902 chr3 32676342 32677705 + 0 NA Intergenic Intergenic -29275 ENSMUSG00000027671.14 ENSMUSG00000027671 ENSMUST00000153779 Actl6a protein_coding Interval_18511 chr10 86823999 86825111 + 0 NA promoter-TSS (ENSMUSG00000054027.8) protein_coding-promoter-TSS (ENSMUSG00000054027.8) -548 ENSMUSG00000054027.8 ENSMUSG00000054027 ENSMUST00000218792 Nt5dc3 protein_coding Interval_159168 chr8 91333030 91333274 + 0 NA intron (ENSMUSG00000055932.15, intron 1 of 6) protein_coding-intron (ENSMUSG00000055932.15, intron 1 of 8) 19538 ENSMUSG00000055932.15 ENSMUSG00000055932 ENSMUST00000140276 Fto protein_coding Interval_92735 chr2 64824453 64824966 + 0 NA Intergenic Intergenic 43879 ENSMUSG00000084104.1 ENSMUSG00000084104 ENSMUST00000120849 Gm13578 processed_pseudogene Interval_16932 chr10 69993313 69994417 + 0 NA promoter-TSS (ENSMUSG00000069601.14) protein_coding-promoter-TSS (ENSMUSG00000069601.14) -181146 ENSMUSG00000048701.13 ENSMUSG00000048701 ENSMUST00000135607 Ccdc6 protein_coding Interval_152757 chr7 137265990 137267095 + 0 NA intron (ENSMUSG00000010476.14, intron 6 of 15) protein_coding-intron (ENSMUSG00000010476.14, intron 6 of 15) 31859 ENSMUSG00000109722.1 ENSMUSG00000109722 ENSMUST00000211070 Gm10578 antisense Interval_22558 chr11 11768944 11769651 + 0 NA exon (ENSMUSG00000018654.17, exon 7 of 7) protein_coding-exon (ENSMUSG00000018654.17, exon 7 of 7) 39665 ENSMUSG00000035455.12 ENSMUSG00000035455 ENSMUST00000150714 Fignl1 protein_coding Interval_97376 chr2 135570944 135572205 + 0 NA intron (ENSMUSG00000085631.1, intron 1 of 1) antisense-intron (ENSMUSG00000085631.1, intron 1 of 1) 12010 ENSMUSG00000085631.1 ENSMUSG00000085631 ENSMUST00000129868 9630028H03Rik antisense Interval_21871 chr11 4865666 4866306 + 0 NA Intergenic Intergenic -16861 ENSMUSG00000009073.16 ENSMUSG00000009073 ENSMUST00000172305 Nf2 protein_coding Interval_64249 chr16 9769694 9770018 + 0 NA intron (ENSMUSG00000059003.12, intron 3 of 13) protein_coding-intron (ENSMUSG00000059003.12, intron 1 of 11) 225067 ENSMUSG00000059003.12 ENSMUSG00000059003 ENSMUST00000197242 Grin2a protein_coding Interval_146596 chr7 47155379 47155687 + 0 NA Intergenic Intergenic -11211 ENSMUSG00000109200.1 ENSMUSG00000109200 ENSMUST00000207829 Gm44969 lincRNA Interval_154040 chr8 12151662 12152360 + 0 NA Intergenic Intergenic -126808 ENSMUSG00000074473.1 ENSMUSG00000074473 ENSMUST00000098935 A230072I06Rik protein_coding Interval_174700 chrX 163549555 163550166 + 0 NA promoter-TSS (ENSMUSG00000031364.2) protein_coding-promoter-TSS (ENSMUSG00000031364.2) -183 ENSMUSG00000031364.2 ENSMUSG00000031364 ENSMUST00000033730 Grpr protein_coding Interval_99104 chr2 157228554 157229532 + 0 NA intron (ENSMUSG00000074627.11, intron 12 of 24) protein_coding-intron (ENSMUSG00000074627.11, intron 12 of 24) -24509 ENSMUSG00000027641.13 ENSMUSG00000027641 ENSMUST00000141296 Rbl1 protein_coding Interval_80915 chr18 50136658 50137102 + 0 NA intron (ENSMUSG00000024507.6, intron 2 of 5) protein_coding-intron (ENSMUSG00000024507.6, intron 2 of 23) 2085 ENSMUSG00000085939.3 ENSMUSG00000085939 ENSMUST00000154992 Cd63-ps transcribed_processed_pseudogene Interval_39611 chr12 91551552 91552488 + 0 NA Intergenic Intergenic 21552 ENSMUSG00000080365.1 ENSMUSG00000080365 ENSMUST00000116715 Gm25776 snoRNA Interval_45553 chr13 55808617 55809420 + 0 NA TTS (ENSMUSG00000021499.12) protein_coding-TTS (ENSMUSG00000021499.12) -17232 ENSMUSG00000114493.2 ENSMUSG00000114493 ENSMUST00000225993 Gm47071 antisense Interval_122518 chr5 23539434 23539691 + 0 NA intron (ENSMUSG00000062604.11, intron 2 of 3) protein_coding-intron (ENSMUSG00000062604.11, intron 6 of 14) 2556 ENSMUSG00000062604.11 ENSMUSG00000062604 ENSMUST00000196592 Srpk2 protein_coding Interval_96980 chr2 130237713 130238193 + 0 NA intron (ENSMUSG00000060332.9, intron 9 of 18) protein_coding-intron (ENSMUSG00000060332.9, intron 10 of 19) -37553 ENSMUSG00000080610.1 ENSMUSG00000080610 ENSMUST00000116960 Snord110 snoRNA Interval_31141 chr11 98389405 98389661 + 0 NA TTS (ENSMUSG00000038208.13) protein_coding-TTS (ENSMUSG00000038208.13) 2821 ENSMUSG00000038216.7 ENSMUSG00000038216 ENSMUST00000124527 Pnmt protein_coding Interval_11317 chr1 180924611 180926003 + 0 NA Intergenic Intergenic -11564 ENSMUSG00000038793.8 ENSMUSG00000038793 ENSMUST00000132087 Lefty1 protein_coding Interval_2572 chr1 40611048 40611487 + 0 NA intron (ENSMUSG00000026065.8, intron 7 of 11) protein_coding-intron (ENSMUSG00000026065.8, intron 7 of 11) 10665 ENSMUSG00000026065.8 ENSMUSG00000026065 ENSMUST00000192454 Slc9a4 protein_coding Interval_98048 chr2 147183957 147184497 + 0 NA exon (ENSMUSG00000027434.11, exon 2 of 2) protein_coding-exon (ENSMUSG00000027434.11, exon 2 of 2) 144 ENSMUSG00000086509.2 ENSMUSG00000086509 ENSMUST00000136998 Nkx2-2os antisense Interval_75105 chr17 63467513 63468094 + 0 NA intron (ENSMUSG00000023965.13, intron 4 of 8) protein_coding-intron (ENSMUSG00000023965.13, intron 4 of 8) -16092 ENSMUSG00000023965.13 ENSMUSG00000023965 ENSMUST00000090318 Fbxl17 protein_coding Interval_16121 chr10 60845016 60845779 + 0 NA Intergenic Intergenic -14015 ENSMUSG00000020099.8 ENSMUSG00000020099 ENSMUST00000218637 Unc5b protein_coding Interval_37711 chr12 71309320 71311614 + 0 NA intron (ENSMUSG00000044548.11, intron 1 of 3) protein_coding-intron (ENSMUSG00000044548.11, intron 1 of 3) 483 ENSMUSG00000044548.11 ENSMUSG00000044548 ENSMUST00000150639 Dact1 protein_coding Interval_32689 chr11 109678326 109679370 + 0 NA intron (ENSMUSG00000020614.13, intron 4 of 11) protein_coding-intron (ENSMUSG00000020614.13, intron 4 of 10) 12904 ENSMUSG00000020612.16 ENSMUSG00000020612 ENSMUST00000155532 Prkar1a protein_coding Interval_60626 chr15 75778562 75778972 + 0 NA TTS (ENSMUSG00000075600.3) protein_coding-TTS (ENSMUSG00000075600.3) 18908 ENSMUSG00000077416.1 ENSMUSG00000077416 ENSMUST00000104228 Gm23747 snoRNA Interval_85047 chr19 21789067 21789320 + 0 NA intron (ENSMUSG00000024754.13, intron 2 of 4) protein_coding-intron (ENSMUSG00000024754.13, intron 1 of 23) 10805 ENSMUSG00000024754.13 ENSMUSG00000024754 ENSMUST00000238079 Cemip2 protein_coding Interval_105565 chr3 87789355 87789629 + 0 NA intron (ENSMUSG00000028072.6, intron 4 of 16) protein_coding-intron (ENSMUSG00000028072.6, intron 4 of 16) 5670 ENSMUSG00000028072.6 ENSMUSG00000028072 ENSMUST00000029712 Ntrk1 protein_coding Interval_96658 chr2 126932473 126933663 + 0 NA exon (ENSMUSG00000027366.12, exon 1 of 15) protein_coding-exon (ENSMUSG00000027366.12, exon 1 of 15) -12723 ENSMUSG00000027366.12 ENSMUSG00000027366 ENSMUST00000125592 Sppl2a protein_coding Interval_29482 chr11 84276486 84277714 + 0 NA intron (ENSMUSG00000020532.18, intron 26 of 55) protein_coding-intron (ENSMUSG00000020532.18, intron 24 of 53) 87507 ENSMUSG00000103122.1 ENSMUSG00000103122 ENSMUST00000194891 Gm37391 TEC Interval_99054 chr2 156885952 156886187 + 0 NA intron (ENSMUSG00000027636.11, intron 1 of 7) protein_coding-intron (ENSMUSG00000027636.11, intron 1 of 7) 1123 ENSMUSG00000027636.11 ENSMUSG00000027636 ENSMUST00000109561 Sla2 protein_coding Interval_150924 chr7 116363249 116363653 + 0 NA intron (ENSMUSG00000030660.9, intron 2 of 17) protein_coding-intron (ENSMUSG00000030660.9, intron 16 of 32) -22822 ENSMUSG00000030660.9 ENSMUSG00000030660 ENSMUST00000205767 Pik3c2a protein_coding Interval_51084 chr14 22168881 22169133 + 0 NA intron (ENSMUSG00000063458.13, intron 2 of 3) protein_coding-intron (ENSMUSG00000063458.13, intron 2 of 6) -132904 ENSMUSG00000114205.1 ENSMUSG00000114205 ENSMUST00000225573 Gm7480 antisense Interval_51234 chr14 25414884 25415419 + 0 NA intron (ENSMUSG00000087535.2, intron 2 of 3) antisense-intron (ENSMUSG00000087535.2, intron 2 of 3) -26490 ENSMUSG00000114232.1 ENSMUSG00000114232 ENSMUST00000224582 Gm17747 lincRNA Interval_67492 chr16 49861019 49862216 + 0 NA intron (ENSMUSG00000055447.19, intron 1 of 9) protein_coding-intron (ENSMUSG00000055447.19, intron 1 of 9) 5972 ENSMUSG00000055447.19 ENSMUSG00000055447 ENSMUST00000229104 Cd47 protein_coding Interval_162037 chr8 124635066 124637455 + 0 NA exon (ENSMUSG00000031983.7, exon 4 of 4) protein_coding-exon (ENSMUSG00000031983.7, exon 4 of 4) 22820 ENSMUSG00000031981.7 ENSMUSG00000031981 ENSMUST00000133583 Capn9 protein_coding Interval_14879 chr10 40726217 40726714 + 0 NA intron (ENSMUSG00000045555.3, intron 1 of 4) protein_coding-intron (ENSMUSG00000045555.3, intron 1 of 4) 43183 ENSMUSG00000045555.3 ENSMUSG00000045555 ENSMUST00000058747 Mettl24 protein_coding Interval_48529 chr13 99854358 99854802 + 0 NA Intergenic Intergenic 46511 ENSMUSG00000021647.7 ENSMUSG00000021647 ENSMUST00000224142 Cartpt protein_coding Interval_31719 chr11 102437049 102438834 + 0 NA TTS (ENSMUSG00000034685.4) protein_coding-TTS (ENSMUSG00000034685.4) 7626 ENSMUSG00000034708.12 ENSMUSG00000034708 ENSMUST00000177428 Grn protein_coding Interval_42675 chr13 17868495 17869149 + 0 NA Intergenic Intergenic -26033 ENSMUSG00000114177.1 ENSMUSG00000114177 ENSMUST00000221786 Gm18362 processed_pseudogene Interval_4500 chr1 74600948 74601870 + 0 NA promoter-TSS (ENSMUSG00000026171.12) protein_coding-promoter-TSS (ENSMUSG00000026171.12) -810 ENSMUSG00000026171.12 ENSMUSG00000026171 ENSMUST00000132081 Rnf25 protein_coding Interval_75238 chr17 65091774 65092687 + 0 NA Intergenic Intergenic 76973 ENSMUSG00000117336.1 ENSMUSG00000117336 ENSMUST00000233948 Gm49865 processed_pseudogene Interval_109079 chr3 135603704 135605648 + 0 NA promoter-TSS (ENSMUSG00000028163.17) protein_coding-promoter-TSS (ENSMUSG00000028163.17) -817 ENSMUSG00000028163.17 ENSMUSG00000028163 ENSMUST00000196246 Nfkb1 protein_coding Interval_90262 chr2 29397570 29398573 + 0 NA intron (ENSMUSG00000026799.15, intron 1 of 5) protein_coding-intron (ENSMUSG00000026799.15, intron 2 of 7) -1612 ENSMUSG00000086994.1 ENSMUSG00000086994 ENSMUST00000153600 Gm13402 antisense Interval_135866 chr6 48056741 48057326 + 0 NA Intergenic Intergenic 8330 ENSMUSG00000092928.1 ENSMUSG00000092928 ENSMUST00000175187 Gm24563 miRNA Interval_134847 chr6 32280472 32281098 + 0 NA intron (ENSMUSG00000029765.12, intron 4 of 31) protein_coding-intron (ENSMUSG00000029765.12, intron 4 of 31) -23128 ENSMUSG00000086720.1 ENSMUSG00000086720 ENSMUST00000143328 Plxna4os3 antisense Interval_50346 chr14 11962660 11966653 + 0 NA TTS (ENSMUSG00000085883.2) antisense-TTS (ENSMUSG00000085883.2) 16552 ENSMUSG00000085883.2 ENSMUSG00000085883 ENSMUST00000151564 Gm3848 antisense Interval_77416 chr17 88558330 88558924 + 0 NA exon (ENSMUSG00000034709.8, exon 10 of 22) protein_coding-exon (ENSMUSG00000034709.8, exon 10 of 22) -3490 ENSMUSG00000034709.8 ENSMUSG00000034709 ENSMUST00000185400 Ppp1r21 protein_coding Interval_132310 chr5 144085876 144086981 + 0 NA Intergenic Intergenic -14008 ENSMUSG00000038970.7 ENSMUSG00000038970 ENSMUST00000041804 Lmtk2 protein_coding Interval_120868 chr4 151162030 151162547 + 0 NA intron (ENSMUSG00000014592.21, intron 7 of 24) protein_coding-intron (ENSMUSG00000014592.21, intron 7 of 23) 72718 ENSMUSG00000078491.2 ENSMUSG00000078491 ENSMUST00000105667 Gm13090 protein_coding Interval_171545 chr9 119123597 119123865 + 0 NA intron (ENSMUSG00000038060.15, intron 10 of 36) protein_coding-intron (ENSMUSG00000038060.15, intron 10 of 17) 21253 ENSMUSG00000038060.15 ENSMUSG00000038060 ENSMUST00000148611 Dlec1 protein_coding Interval_149320 chr7 97424795 97425308 + 0 NA Intergenic Intergenic -7532 ENSMUSG00000035686.8 ENSMUSG00000035686 ENSMUST00000206613 Thrsp protein_coding Interval_72025 chr17 27622828 27623865 + 0 NA promoter-TSS (ENSMUSG00000024213.14) protein_coding-promoter-TSS (ENSMUSG00000024213.14) -151 ENSMUSG00000116571.1 ENSMUSG00000116571 ENSMUST00000231767 Gm49741 bidirectional_promoter_lncRNA Interval_6723 chr1 119006885 119007537 + 0 NA intron (ENSMUSG00000048402.14, intron 1 of 6) protein_coding-intron (ENSMUSG00000048402.14, intron 1 of 13) 46128 ENSMUSG00000048402.14 ENSMUSG00000048402 ENSMUST00000159678 Gli2 protein_coding Interval_94048 chr2 82551583 82551837 + 0 NA Intergenic Intergenic -7188 ENSMUSG00000083804.1 ENSMUSG00000083804 ENSMUST00000122185 Gm13676 processed_pseudogene Interval_43356 chr13 29616743 29617283 + 0 NA intron (ENSMUSG00000006191.17, intron 9 of 10) protein_coding-intron (ENSMUSG00000006191.17, intron 9 of 15) -99559 ENSMUSG00000006191.17 ENSMUSG00000006191 ENSMUST00000129231 Cdkal1 protein_coding Interval_80883 chr18 49878795 49879007 + 0 NA exon (ENSMUSG00000037416.13, exon 18 of 43) protein_coding-exon (ENSMUSG00000037416.13, exon 18 of 43) -43812 ENSMUSG00000037416.13 ENSMUSG00000037416 ENSMUST00000181042 Dmxl1 protein_coding Interval_116347 chr4 110050307 110051605 + 0 NA Intergenic Intergenic 72903 ENSMUSG00000047143.3 ENSMUSG00000047143 ENSMUST00000061187 Dmrta2 protein_coding Interval_117564 chr4 124693118 124693920 + 0 NA promoter-TSS (ENSMUSG00000028907.7) protein_coding-promoter-TSS (ENSMUSG00000028907.7) 15 ENSMUSG00000028907.7 ENSMUSG00000028907 ENSMUST00000153088 Utp11 protein_coding Interval_162846 chr9 10320313 10321098 + 0 NA intron (ENSMUSG00000039488.15, intron 3 of 24) protein_coding-intron (ENSMUSG00000039488.15, intron 1 of 22) -25549 ENSMUSG00000096815.1 ENSMUSG00000096815 ENSMUST00000179931 Gm25086 miRNA Interval_34024 chr11 120074947 120075604 + 0 NA intron (ENSMUSG00000039781.14, intron 7 of 25) protein_coding-intron (ENSMUSG00000039781.14, intron 7 of 25) -7037 ENSMUSG00000093075.1 ENSMUSG00000093075 ENSMUST00000175334 Gm25948 miRNA Interval_28196 chr11 74182649 74182965 + 0 NA Intergenic Intergenic -3466 ENSMUSG00000070378.3 ENSMUSG00000070378 ENSMUST00000076675 Olfr403 protein_coding Interval_84842 chr19 17393499 17394680 + 0 NA promoter-TSS (ENSMUSG00000024712.9) protein_coding-promoter-TSS (ENSMUSG00000024712.9) -3348 ENSMUSG00000024712.9 ENSMUSG00000024712 ENSMUST00000146171 Rfk protein_coding Interval_59306 chr15 51060034 51060230 + 0 NA Intergenic Intergenic 162493 ENSMUSG00000115339.1 ENSMUSG00000115339 ENSMUST00000226611 Gm48913 lincRNA Interval_82899 chr18 78617871 78618198 + 0 NA Intergenic Intergenic -21092 ENSMUSG00000024552.16 ENSMUSG00000024552 ENSMUST00000235389 Slc14a2 protein_coding Interval_68113 chr16 65240546 65240915 + 0 NA Intergenic Intergenic -44281 ENSMUSG00000116833.1 ENSMUSG00000116833 ENSMUST00000232619 Gm9584 processed_pseudogene Interval_11935 chr1 187314288 187315358 + 0 NA intron (ENSMUSG00000039210.16, intron 6 of 7) protein_coding-intron (ENSMUSG00000039210.16, intron 6 of 9) 62646 ENSMUSG00000104245.1 ENSMUSG00000104245 ENSMUST00000192285 Gm38155 antisense Interval_17026 chr10 70563799 70564343 + 0 NA exon (ENSMUSG00000037747.9, exon 4 of 4) protein_coding-exon (ENSMUSG00000037747.9, exon 4 of 4) 35219 ENSMUSG00000037747.9 ENSMUSG00000037747 ENSMUST00000160127 Phyhipl protein_coding Interval_124279 chr5 43472661 43472911 + 0 NA intron (ENSMUSG00000104691.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000104691.1, intron 1 of 1) 2094 ENSMUSG00000104691.1 ENSMUSG00000104691 ENSMUST00000198692 Gm43021 lincRNA Interval_109809 chr3 147797258 147797917 + 0 NA Intergenic Intergenic -161940 ENSMUSG00000103349.1 ENSMUSG00000103349 ENSMUST00000195819 Gm36888 lincRNA Interval_171563 chr9 119221158 119221374 + 0 NA exon (ENSMUSG00000092212.3, exon 5 of 6) polymorphic_pseudogene-exon (ENSMUSG00000092212.3, exon 5 of 6) 10426 ENSMUSG00000092212.3 ENSMUSG00000092212 ENSMUST00000173185 Slc22a13b polymorphic_pseudogene Interval_4295 chr1 72490150 72491466 + 0 NA intron (ENSMUSG00000039372.5, intron 1 of 3) protein_coding-intron (ENSMUSG00000039372.5, intron 1 of 3) 31309 ENSMUSG00000085812.1 ENSMUSG00000085812 ENSMUST00000146593 Gm15843 processed_pseudogene Interval_155443 chr8 33624961 33626283 + 0 NA TTS (ENSMUSG00000052906.7) protein_coding-TTS (ENSMUSG00000052906.7) 10632 ENSMUSG00000052906.7 ENSMUSG00000052906 ENSMUST00000210807 Ubxn8 protein_coding Interval_61711 chr15 83518051 83518964 + 0 NA Intergenic Intergenic 1571 ENSMUSG00000093243.1 ENSMUSG00000093243 ENSMUST00000175502 Gm24575 miRNA Interval_4756 chr1 78412281 78413678 + 0 NA intron (ENSMUSG00000032908.9, intron 4 of 4) protein_coding-intron (ENSMUSG00000032908.9, intron 4 of 4) -20373 ENSMUSG00000101798.1 ENSMUSG00000101798 ENSMUST00000186625 Gm28995 unprocessed_pseudogene Interval_96191 chr2 120441828 120442903 + 0 NA intron (ENSMUSG00000062646.12, intron 14 of 22) protein_coding-intron (ENSMUSG00000062646.12, intron 15 of 23) -13654 ENSMUSG00000118623.1 ENSMUSG00000118623 ENSMUST00000124129 AL935121.1 protein_coding Interval_110426 chr3 157997165 157997707 + 0 NA intron (ENSMUSG00000039988.14, intron 8 of 11) protein_coding-intron (ENSMUSG00000039988.14, intron 9 of 12) 8915 ENSMUSG00000039988.14 ENSMUSG00000039988 ENSMUST00000199574 Ankrd13c protein_coding Interval_42037 chr13 6666687 6666987 + 0 NA Intergenic Intergenic -3943 ENSMUSG00000068324.5 ENSMUSG00000068324 ENSMUST00000089635 Gm10029 processed_pseudogene Interval_132073 chr5 142622704 142623297 + 0 NA promoter-TSS (ENSMUSG00000104978.1) processed_pseudogene-promoter-TSS (ENSMUSG00000104978.1) -169 ENSMUSG00000104978.1 ENSMUSG00000104978 ENSMUST00000197356 Gm31274 processed_pseudogene Interval_89773 chr2 25355093 25356936 + 0 NA promoter-TSS (ENSMUSG00000026958.13) protein_coding-promoter-TSS (ENSMUSG00000026958.13) 332 ENSMUSG00000026958.13 ENSMUSG00000026958 ENSMUST00000125248 Dpp7 protein_coding Interval_122935 chr5 27544624 27545433 + 0 NA intron (ENSMUSG00000061576.15, intron 2 of 12) protein_coding-intron (ENSMUSG00000061576.15, intron 6 of 25) 8847 ENSMUSG00000086505.1 ENSMUSG00000086505 ENSMUST00000124392 Gm16058 antisense Interval_172543 chrX 36474300 36474608 + 0 NA intron (ENSMUSG00000091556.8, intron 3 of 7) protein_coding-intron (ENSMUSG00000091556.8, intron 2 of 3) 17376 ENSMUSG00000091556.8 ENSMUSG00000091556 ENSMUST00000167210 Gm14569 protein_coding Interval_4438 chr1 74206008 74206822 + 0 NA TTS (ENSMUSG00000087820.1) miRNA-TTS (ENSMUSG00000087820.1) 205 ENSMUSG00000087820.1 ENSMUSG00000087820 ENSMUST00000157195 Mir1928 miRNA Interval_69289 chr16 91942963 91943183 + 0 NA TTS (ENSMUSG00000099268.1) miRNA-TTS (ENSMUSG00000099268.1) 1075 ENSMUSG00000099268.1 ENSMUSG00000099268 ENSMUST00000184087 Gm27773 miRNA Interval_63202 chr15 99712775 99713805 + 0 NA TTS (ENSMUSG00000023018.5) protein_coding-TTS (ENSMUSG00000023018.5) -4289 ENSMUSG00000023019.12 ENSMUSG00000023019 ENSMUST00000161768 Gpd1 protein_coding Interval_37138 chr12 58857793 58858817 + 0 NA Intergenic Intergenic 44422 ENSMUSG00000112785.1 ENSMUSG00000112785 ENSMUST00000220177 Gm47645 lincRNA Interval_112563 chr4 43208757 43209637 + 0 NA promoter-TSS (ENSMUSG00000028456.18) protein_coding-promoter-TSS (ENSMUSG00000028456.18) -301 ENSMUSG00000028456.18 ENSMUSG00000028456 ENSMUST00000143653 Unc13b protein_coding Interval_12459 chr1 193650232 193650516 + 0 NA Intergenic Intergenic -140200 ENSMUSG00000097850.2 ENSMUSG00000097850 ENSMUST00000180420 Mir205hg lincRNA Interval_61381 chr15 81235252 81236007 + 0 NA exon (ENSMUSG00000050164.11, exon 1 of 2) protein_coding-exon (ENSMUSG00000050164.11, exon 1 of 2) 130 ENSMUSG00000050164.11 ENSMUSG00000050164 ENSMUST00000166855 Mchr1 protein_coding Interval_121743 chr5 6328566 6330151 + 0 NA Intergenic Intergenic -15367 ENSMUSG00000105370.1 ENSMUSG00000105370 ENSMUST00000197319 Gm42718 processed_pseudogene Interval_70189 chr17 6042111 6042336 + 0 NA TTS (ENSMUSG00000015659.12) protein_coding-TTS (ENSMUSG00000015659.12) 7832 ENSMUSG00000015659.12 ENSMUSG00000015659 ENSMUST00000139542 Serac1 protein_coding Interval_147383 chr7 66308441 66308779 + 0 NA promoter-TSS (ENSMUSG00000109119.1) antisense-promoter-TSS (ENSMUSG00000109119.1) -585 ENSMUSG00000109119.1 ENSMUSG00000109119 ENSMUST00000207140 Gm44752 antisense Interval_27367 chr11 67010596 67012512 + 0 NA TTS (ENSMUSG00000085926.1) processed_transcript-TTS (ENSMUSG00000085926.1) 9468 ENSMUSG00000085926.1 ENSMUSG00000085926 ENSMUST00000138819 Gm12299 processed_transcript Interval_142272 chr6 140303960 140305200 + 0 NA Intergenic Intergenic -4491 ENSMUSG00000108229.1 ENSMUSG00000108229 ENSMUST00000203859 1700102F20Rik TEC Interval_162999 chr9 14365171 14365997 + 0 NA intron (ENSMUSG00000037419.9, intron 2 of 2) protein_coding-intron (ENSMUSG00000037419.9, intron 1 of 1) 15399 ENSMUSG00000037419.9 ENSMUSG00000037419 ENSMUST00000214236 Endod1 protein_coding Interval_123097 chr5 29687567 29688553 + 0 NA Intergenic Intergenic -3362 ENSMUSG00000104648.1 ENSMUSG00000104648 ENSMUST00000195937 Gm42570 processed_pseudogene Interval_169354 chr9 96668785 96670334 + 0 NA Intergenic Intergenic -36269 ENSMUSG00000102097.1 ENSMUSG00000102097 ENSMUST00000186821 A930006L05Rik antisense Interval_9000 chr1 153011629 153011881 + 0 NA intron (ENSMUSG00000042751.14, intron 2 of 8) protein_coding-intron (ENSMUSG00000042751.14, intron 1 of 10) -61658 ENSMUSG00000100702.1 ENSMUSG00000100702 ENSMUST00000187136 Gm8976 processed_pseudogene Interval_41001 chr12 110535125 110535430 + 0 NA intron (ENSMUSG00000017843.14, intron 4 of 12) protein_coding-intron (ENSMUSG00000017843.14, intron 2 of 13) -49661 ENSMUSG00000113585.1 ENSMUSG00000113585 ENSMUST00000222863 Gm19605 processed_transcript Interval_87579 chr19 53556953 53557935 + 0 NA Intergenic Intergenic -27789 ENSMUSG00000118210.1 ENSMUSG00000118210 ENSMUST00000236686 Gm50394 antisense Interval_128036 chr5 110434941 110435240 + 0 NA intron (ENSMUSG00000043323.17, intron 1 of 2) protein_coding-intron (ENSMUSG00000043323.17, intron 1 of 18) -12899 ENSMUSG00000105482.1 ENSMUSG00000105482 ENSMUST00000196305 Gm42596 antisense Interval_142928 chr6 147052175 147053021 + 0 NA intron (ENSMUSG00000040112.9, intron 4 of 4) protein_coding-intron (ENSMUSG00000040112.9, intron 4 of 7) 9834 ENSMUSG00000040112.9 ENSMUSG00000040112 ENSMUST00000123139 Mrps35 protein_coding Interval_14403 chr10 32972135 32972874 + 0 NA Intergenic Intergenic -32819 ENSMUSG00000112469.1 ENSMUSG00000112469 ENSMUST00000218959 Gm47823 lincRNA Interval_46808 chr13 70963500 70963818 + 0 NA Intergenic Intergenic 80711 ENSMUSG00000021600.5 ENSMUSG00000021600 ENSMUST00000225672 8030423J24Rik lincRNA Interval_121212 chr4 154093458 154093665 + 0 NA promoter-TSS (ENSMUSG00000087071.1) antisense-promoter-TSS (ENSMUSG00000087071.1) 82 ENSMUSG00000087071.1 ENSMUSG00000087071 ENSMUST00000143429 Trp73os antisense Interval_170252 chr9 106474612 106474925 + 0 NA exon (ENSMUSG00000023249.15, exon 4 of 11) protein_coding-exon (ENSMUSG00000023249.15, exon 4 of 11) 1842 ENSMUSG00000023249.15 ENSMUSG00000023249 ENSMUST00000125850 Parp3 protein_coding Interval_63855 chr16 4016800 4017880 + 0 NA Intergenic Intergenic -13570 ENSMUSG00000039738.16 ENSMUSG00000039738 ENSMUST00000171658 Slx4 protein_coding Interval_93644 chr2 75537912 75538395 + 0 NA Intergenic Intergenic -73365 ENSMUSG00000086576.1 ENSMUSG00000086576 ENSMUST00000142828 Gm13660 lincRNA Interval_120007 chr4 141337772 141339414 + 0 NA Intergenic Intergenic -7571 ENSMUSG00000093180.1 ENSMUSG00000093180 ENSMUST00000175439 Gm25690 miRNA Interval_169186 chr9 95386491 95386747 + 0 NA Intergenic Intergenic 20103 ENSMUSG00000033350.7 ENSMUSG00000033350 ENSMUST00000036267 Chst2 protein_coding Interval_23639 chr11 24016629 24017123 + 0 NA Intergenic Intergenic 2221 ENSMUSG00000104783.1 ENSMUSG00000104783 ENSMUST00000199670 Gm44381 miRNA Interval_134778 chr6 31453571 31454012 + 0 NA intron (ENSMUSG00000025609.15, intron 8 of 8) protein_coding-intron (ENSMUSG00000025609.15, intron 8 of 17) 54946 ENSMUSG00000025609.15 ENSMUSG00000025609 ENSMUST00000149859 Mkln1 protein_coding Interval_107301 chr3 105577860 105578344 + 0 NA intron (ENSMUSG00000040896.16, intron 2 of 4) protein_coding-intron (ENSMUSG00000040896.16, intron 1 of 6) 75195 ENSMUSG00000105753.1 ENSMUSG00000105753 ENSMUST00000200070 Gm43847 sense_intronic Interval_31260 chr11 99180249 99181104 + 0 NA Intergenic Intergenic -25599 ENSMUSG00000037944.8 ENSMUSG00000037944 ENSMUST00000103134 Ccr7 protein_coding Interval_69491 chr16 93843502 93843773 + 0 NA promoter-TSS (ENSMUSG00000039456.10) protein_coding-promoter-TSS (ENSMUSG00000039456.10) -10618 ENSMUSG00000116927.1 ENSMUSG00000116927 ENSMUST00000231503 Gm30881 antisense Interval_19160 chr10 95223312 95223665 + 0 NA intron (ENSMUSG00000045867.10, intron 2 of 2) protein_coding-intron (ENSMUSG00000045867.10, intron 2 of 2) 63127 ENSMUSG00000112682.1 ENSMUSG00000112682 ENSMUST00000220149 Gm48874 TEC Interval_113385 chr4 54032515 54033581 + 0 NA Intergenic Intergenic 28991 ENSMUSG00000089552.1 ENSMUSG00000089552 ENSMUST00000158927 Gm24177 snoRNA Interval_146415 chr7 45765476 45766796 + 0 NA intron (ENSMUSG00000003271.17, intron 1 of 6) protein_coding-intron (ENSMUSG00000003271.17, intron 1 of 6) 18331 ENSMUSG00000003271.17 ENSMUSG00000003271 ENSMUST00000211779 Sult2b1 protein_coding Interval_144553 chr7 25847894 25848676 + 0 NA Intergenic Intergenic -11855 ENSMUSG00000108415.1 ENSMUSG00000108415 ENSMUST00000206564 Gm30146 lincRNA Interval_7032 chr1 122755613 122755882 + 0 NA Intergenic Intergenic -54559 ENSMUSG00000099451.1 ENSMUSG00000099451 ENSMUST00000190942 Gm29192 processed_pseudogene Interval_57412 chr15 10646604 10647515 + 0 NA intron (ENSMUSG00000022246.14, intron 2 of 16) protein_coding-intron (ENSMUSG00000022246.14, intron 2 of 17) 46722 ENSMUSG00000115667.1 ENSMUSG00000115667 ENSMUST00000228059 Gm10389 antisense Interval_61500 chr15 82006675 82006946 + 0 NA intron (ENSMUSG00000022472.16, intron 3 of 7) protein_coding-intron (ENSMUSG00000022472.16, intron 1 of 5) 9353 ENSMUSG00000022472.16 ENSMUSG00000022472 ENSMUST00000089187 Desi1 protein_coding Interval_56388 chr14 118363693 118363948 + 0 NA promoter-TSS (ENSMUSG00000096997.1) lincRNA-promoter-TSS (ENSMUSG00000096997.1) 88 ENSMUSG00000096997.1 ENSMUSG00000096997 ENSMUST00000180942 Gm26791 lincRNA Interval_69381 chr16 92597784 92598005 + 0 NA Intergenic Intergenic -14920 ENSMUSG00000097139.3 ENSMUSG00000097139 ENSMUST00000180989 Gm26626 antisense Interval_41183 chr12 111670154 111672872 + 0 NA promoter-TSS (ENSMUSG00000001270.9) protein_coding-promoter-TSS (ENSMUSG00000001270.9) 31 ENSMUSG00000001270.9 ENSMUSG00000001270 ENSMUST00000222513 Ckb protein_coding Interval_94498 chr2 91682820 91684134 + 0 NA intron (ENSMUSG00000027244.14, intron 2 of 7) protein_coding-intron (ENSMUSG00000027244.14, intron 10 of 16) 1775 ENSMUSG00000027244.14 ENSMUSG00000027244 ENSMUST00000136412 Atg13 protein_coding Interval_56051 chr14 105159419 105159819 + 0 NA intron (ENSMUSG00000022119.15, intron 3 of 21) protein_coding-intron (ENSMUSG00000022119.15, intron 3 of 21) 24766 ENSMUSG00000115831.1 ENSMUSG00000115831 ENSMUST00000226837 Gm48937 processed_pseudogene Interval_73403 chr17 37009658 37009973 + 0 NA TTS (ENSMUSG00000076439.12) protein_coding-TTS (ENSMUSG00000076439.12) -5528 ENSMUSG00000088819.1 ENSMUSG00000088819 ENSMUST00000158194 Gm22388 misc_RNA Interval_111084 chr4 11764916 11765339 + 0 NA intron (ENSMUSG00000028217.11, intron 1 of 14) protein_coding-intron (ENSMUSG00000028217.11, intron 1 of 17) 6934 ENSMUSG00000028217.11 ENSMUSG00000028217 ENSMUST00000108303 Cdh17 protein_coding Interval_83686 chr19 3724054 3725018 + 0 NA Intergenic Intergenic -4963 ENSMUSG00000117739.1 ENSMUSG00000117739 ENSMUST00000237981 Gm36787 antisense Interval_85834 chr19 32240424 32242971 + 0 NA intron (ENSMUSG00000040451.18, intron 2 of 10) protein_coding-intron (ENSMUSG00000040451.18, intron 4 of 9) -32424 ENSMUSG00000118064.1 ENSMUSG00000118064 ENSMUST00000235377 Gm50210 sense_intronic Interval_122999 chr5 28292930 28294973 + 0 NA Intergenic Intergenic -48145 ENSMUSG00000044681.19 ENSMUSG00000044681 ENSMUST00000141196 Cnpy1 protein_coding Interval_52958 chr14 52291746 52292465 + 0 NA exon (ENSMUSG00000016831.12, exon 8 of 10) protein_coding-exon (ENSMUSG00000016831.12, exon 8 of 10) 6371 ENSMUSG00000016831.12 ENSMUSG00000016831 ENSMUST00000173361 Tox4 protein_coding Interval_63970 chr16 4912176 4912614 + 0 NA promoter-TSS (ENSMUSG00000022517.17) protein_coding-promoter-TSS (ENSMUSG00000022517.17) 26009 ENSMUSG00000022517.17 ENSMUSG00000022517 ENSMUST00000230108 Mgrn1 protein_coding Interval_142976 chr6 147951116 147951348 + 0 NA Intergenic Intergenic 96107 ENSMUSG00000086777.3 ENSMUSG00000086777 ENSMUST00000149815 Far2os2 antisense Interval_154259 chr8 13878611 13878974 + 0 NA exon (ENSMUSG00000047710.8, exon 2 of 2) protein_coding-exon (ENSMUSG00000047710.8, exon 2 of 2) 2695 ENSMUSG00000065817.1 ENSMUSG00000065817 ENSMUST00000083883 Gm24698 snoRNA Interval_11600 chr1 183210311 183211283 + 0 NA intron (ENSMUSG00000030768.12, intron 1 of 2) protein_coding-intron (ENSMUSG00000030768.12, intron 1 of 9) -4381 ENSMUSG00000102478.1 ENSMUSG00000102478 ENSMUST00000195236 BC085271 transcribed_processed_pseudogene Interval_27130 chr11 63191696 63192160 + 0 NA Intergenic Intergenic 18014 ENSMUSG00000085532.1 ENSMUSG00000085532 ENSMUST00000123420 B430319H21Rik lincRNA Interval_4203 chr1 71608938 71611245 + 0 NA promoter-TSS (ENSMUSG00000026193.15) protein_coding-promoter-TSS (ENSMUSG00000026193.15) -42797 ENSMUSG00000073652.10 ENSMUSG00000073652 ENSMUST00000125934 Apol7d antisense Interval_89272 chr2 18698695 18699916 + 0 NA TTS (ENSMUSG00000037708.16) protein_coding-TTS (ENSMUSG00000037708.16) 221 ENSMUSG00000037708.16 ENSMUSG00000037708 ENSMUST00000173763 Spag6 protein_coding Interval_51016 chr14 21617866 21618065 + 0 NA intron (ENSMUSG00000021767.19, intron 2 of 15) protein_coding-intron (ENSMUSG00000021767.19, intron 3 of 16) 85137 ENSMUSG00000063821.6 ENSMUSG00000063821 ENSMUST00000224735 Dupd1 protein_coding Interval_170814 chr9 110930133 110930556 + 0 NA Intergenic Intergenic 4941 ENSMUSG00000096245.1 ENSMUSG00000096245 ENSMUST00000179216 Gm24269 miRNA Interval_51851 chr14 32960588 32960816 + 0 NA intron (ENSMUSG00000051506.17, intron 61 of 61) protein_coding-intron (ENSMUSG00000051506.17, intron 58 of 58) -34563 ENSMUSG00000041673.12 ENSMUSG00000041673 ENSMUST00000123910 Lrrc18 protein_coding Interval_61337 chr15 80935769 80937451 + 0 NA exon (ENSMUSG00000047888.10, exon 25 of 25) protein_coding-exon (ENSMUSG00000047888.10, exon 25 of 25) -3429 ENSMUSG00000092868.1 ENSMUSG00000092868 ENSMUST00000175127 Mir5113 miRNA Interval_9704 chr1 161159910 161161099 + 0 NA intron (ENSMUSG00000044835.15, intron 2 of 4) protein_coding-intron (ENSMUSG00000044835.15, intron 3 of 5) -1190 ENSMUSG00000049160.15 ENSMUSG00000049160 ENSMUST00000178511 Tex50 protein_coding Interval_161867 chr8 123318233 123320010 + 0 NA promoter-TSS (ENSMUSG00000032815.16) protein_coding-promoter-TSS (ENSMUSG00000032815.16) -31130 ENSMUSG00000010154.7 ENSMUSG00000010154 ENSMUST00000212404 Spire2 protein_coding Interval_113870 chr4 59461307 59461998 + 0 NA Intergenic Intergenic -71095 ENSMUSG00000080831.1 ENSMUSG00000080831 ENSMUST00000119529 Gm12529 processed_pseudogene Interval_71721 chr17 25686382 25686579 + 0 NA Intergenic Intergenic 7740 ENSMUSG00000096451.1 ENSMUSG00000096451 ENSMUST00000180010 Gm22645 snRNA Interval_173196 chrX 74007127 74009303 + 0 NA TTS (ENSMUSG00000080829.1) processed_pseudogene-TTS (ENSMUSG00000080829.1) 1513 ENSMUSG00000080829.1 ENSMUSG00000080829 ENSMUST00000120692 Gm8545 processed_pseudogene Interval_50087 chr14 7899002 7900836 + 0 NA intron (ENSMUSG00000025278.9, intron 18 of 45) protein_coding-intron (ENSMUSG00000025278.9, intron 18 of 45) 15178 ENSMUSG00000025278.9 ENSMUSG00000025278 ENSMUST00000228206 Flnb protein_coding Interval_102655 chr3 28967450 28968027 + 0 NA Intergenic Intergenic 75121 ENSMUSG00000074655.1 ENSMUSG00000074655 ENSMUST00000099170 Gm1527 protein_coding Interval_93919 chr2 79331961 79332857 + 0 NA TTS (ENSMUSG00000075256.9) protein_coding-TTS (ENSMUSG00000075256.9) -15956 ENSMUSG00000088915.1 ENSMUSG00000088915 ENSMUST00000158290 Gm22606 snRNA Interval_156050 chr8 43214433 43215236 + 0 NA Intergenic Intergenic 14866 ENSMUSG00000109974.1 ENSMUSG00000109974 ENSMUST00000209342 Gm2221 processed_pseudogene Interval_22655 chr11 12559021 12559513 + 0 NA Intergenic Intergenic -117666 ENSMUSG00000089034.1 ENSMUSG00000089034 ENSMUST00000158409 Gm22156 snoRNA Interval_5624 chr1 90329242 90329884 + 0 NA Intergenic Intergenic 2251 ENSMUSG00000098368.1 ENSMUSG00000098368 ENSMUST00000184315 Gm27648 rRNA Interval_152999 chr7 140732584 140733197 + 0 NA Intergenic Intergenic 15417 ENSMUSG00000110199.2 ENSMUSG00000110199 ENSMUST00000211706 Olfr542-ps1 transcribed_unprocessed_pseudogene Interval_145609 chr7 35955626 35956521 + 0 NA Intergenic Intergenic 117813 ENSMUSG00000100387.1 ENSMUSG00000100387 ENSMUST00000187488 Gm28514 lincRNA Interval_143285 chr7 4953478 4953685 + 0 NA intron (ENSMUSG00000030433.15, intron 3 of 3) protein_coding-intron (ENSMUSG00000030433.15, intron 3 of 3) 10825 ENSMUSG00000030433.15 ENSMUSG00000030433 ENSMUST00000182837 Sbk2 protein_coding Interval_69383 chr16 92613107 92613495 + 0 NA intron (ENSMUSG00000097139.3, intron 2 of 4) protein_coding-intron (ENSMUSG00000022952.17, intron 7 of 7) 487 ENSMUSG00000097139.3 ENSMUSG00000097139 ENSMUST00000180989 Gm26626 antisense Interval_110334 chr3 157013179 157014136 + 0 NA intron (ENSMUSG00000040037.13, intron 2 of 2) protein_coding-intron (ENSMUSG00000040037.13, intron 2 of 6) 13240 ENSMUSG00000106018.1 ENSMUSG00000106018 ENSMUST00000198749 Gm43527 TEC Interval_91261 chr2 36896744 36897342 + 0 NA Intergenic Intergenic -4107 ENSMUSG00000075382.3 ENSMUSG00000075382 ENSMUST00000100149 Olfr353 protein_coding Interval_160457 chr8 109640227 109640999 + 0 NA intron (ENSMUSG00000048827.12, intron 7 of 9) protein_coding-intron (ENSMUSG00000048827.12, intron 15 of 31) 9281 ENSMUSG00000048827.12 ENSMUSG00000048827 ENSMUST00000212545 Pkd1l3 protein_coding Interval_159088 chr8 90182863 90183508 + 0 NA Intergenic Intergenic 164946 ENSMUSG00000043668.13 ENSMUSG00000043668 ENSMUST00000176034 Tox3 protein_coding Interval_84854 chr19 17512858 17513089 + 0 NA intron (ENSMUSG00000024713.16, intron 22 of 37) protein_coding-intron (ENSMUSG00000024713.16, intron 22 of 37) 115536 ENSMUSG00000024712.9 ENSMUSG00000024712 ENSMUST00000146171 Rfk protein_coding Interval_8383 chr1 138590698 138591287 + 0 NA intron (ENSMUSG00000026393.10, intron 1 of 9) protein_coding-intron (ENSMUSG00000026393.10, intron 1 of 7) -19636 ENSMUSG00000102448.1 ENSMUSG00000102448 ENSMUST00000191656 Gm37101 TEC Interval_159974 chr8 105518444 105519439 + 0 NA exon (ENSMUSG00000031891.6, exon 1 of 5) protein_coding-exon (ENSMUSG00000031891.6, exon 1 of 5) 186 ENSMUSG00000031891.6 ENSMUSG00000031891 ENSMUST00000034363 Hsd11b2 protein_coding Interval_33763 chr11 118348204 118349429 + 0 NA intron (ENSMUSG00000017466.9, intron 1 of 4) protein_coding-intron (ENSMUSG00000017466.9, intron 1 of 4) 6924 ENSMUSG00000017466.9 ENSMUSG00000017466 ENSMUST00000155707 Timp2 protein_coding Interval_116752 chr4 117098532 117098896 + 0 NA intron (ENSMUSG00000028681.11, intron 2 of 21) protein_coding-intron (ENSMUSG00000028681.11, intron 2 of 21) -6206 ENSMUSG00000028681.11 ENSMUSG00000028681 ENSMUST00000123226 Ptch2 protein_coding Interval_26514 chr11 58301302 58303008 + 0 NA Intergenic Intergenic -4914 ENSMUSG00000037243.17 ENSMUSG00000037243 ENSMUST00000049353 Zfp692 protein_coding Interval_170783 chr9 110732295 110733315 + 0 NA intron (ENSMUSG00000032492.14, intron 2 of 6) protein_coding-intron (ENSMUSG00000032492.14, intron 1 of 13) -9056 ENSMUSG00000059741.13 ENSMUSG00000059741 ENSMUST00000153142 Myl3 protein_coding Interval_161972 chr8 124196611 124198918 + 0 NA intron (ENSMUSG00000092329.1, intron 1 of 15) protein_coding-intron (ENSMUSG00000092329.1, intron 1 of 15) 37691 ENSMUSG00000110482.1 ENSMUSG00000110482 ENSMUST00000212467 Gm3889 processed_pseudogene Interval_103893 chr3 54632799 54634799 + 0 NA exon (ENSMUSG00000104831.1, exon 1 of 1) processed_pseudogene-exon (ENSMUSG00000104831.1, exon 1 of 1) 769 ENSMUSG00000104831.1 ENSMUSG00000104831 ENSMUST00000197444 B020017C02Rik processed_pseudogene Interval_139603 chr6 102563760 102564740 + 0 NA intron (ENSMUSG00000030075.10, intron 1 of 22) protein_coding-intron (ENSMUSG00000030075.10, intron 1 of 22) 96646 ENSMUSG00000107533.1 ENSMUSG00000107533 ENSMUST00000204142 Gm44422 processed_pseudogene Interval_120532 chr4 149171721 149172415 + 0 NA Intergenic Intergenic -5297 ENSMUSG00000028961.15 ENSMUSG00000028961 ENSMUST00000143944 Pgd protein_coding Interval_58835 chr15 38452380 38453230 + 0 NA intron (ENSMUSG00000115009.1, intron 3 of 4) lincRNA-intron (ENSMUSG00000115009.1, intron 3 of 4) 2329 ENSMUSG00000115009.1 ENSMUSG00000115009 ENSMUST00000228650 G930009F23Rik lincRNA Interval_10802 chr1 175232395 175232728 + 0 NA intron (ENSMUSG00000026527.13, intron 3 of 17) protein_coding-intron (ENSMUSG00000026527.13, intron 2 of 15) -146381 ENSMUSG00000026527.13 ENSMUSG00000026527 ENSMUST00000193798 Rgs7 protein_coding Interval_49027 chr13 107035686 107035942 + 0 NA TTS (ENSMUSG00000114893.1) lincRNA-TTS (ENSMUSG00000114893.1) 1530 ENSMUSG00000114893.1 ENSMUSG00000114893 ENSMUST00000224166 Gm48684 lincRNA Interval_70682 chr17 12998097 13000310 + 0 NA Intergenic Intergenic -5034 ENSMUSG00000060475.13 ENSMUSG00000060475 ENSMUST00000233467 Wtap protein_coding Interval_126154 chr5 79814747 79815513 + 0 NA Intergenic Intergenic -64601 ENSMUSG00000084435.1 ENSMUSG00000084435 ENSMUST00000122486 Gm23429 snRNA Interval_41707 chr12 117993384 117993917 + 0 NA intron (ENSMUSG00000018581.15, intron 23 of 51) protein_coding-intron (ENSMUSG00000018581.15, intron 55 of 81) 66653 ENSMUSG00000018581.15 ENSMUSG00000018581 ENSMUST00000176239 Dnah11 protein_coding Interval_15398 chr10 45448813 45449009 + 0 NA intron (ENSMUSG00000063804.8, intron 2 of 3) protein_coding-intron (ENSMUSG00000063804.8, intron 2 of 4) 37484 ENSMUSG00000063804.8 ENSMUSG00000063804 ENSMUST00000214555 Lin28b protein_coding Interval_103049 chr3 34728188 34728448 + 0 NA Intergenic Intergenic -11656 ENSMUSG00000105153.4 ENSMUSG00000105153 ENSMUST00000198364 Gm3143 lincRNA Interval_163325 chr9 20877802 20878945 + 0 NA exon (ENSMUSG00000038742.7, exon 2 of 6) protein_coding-exon (ENSMUSG00000038742.7, exon 2 of 6) 1354 ENSMUSG00000038742.7 ENSMUSG00000038742 ENSMUST00000043726 Angptl6 protein_coding Interval_173154 chrX 73639065 73640664 + 0 NA intron (ENSMUSG00000031383.8, intron 1 of 3) protein_coding-intron (ENSMUSG00000031383.8, intron 1 of 3) 445 ENSMUSG00000031383.8 ENSMUSG00000031383 ENSMUST00000019701 Dusp9 protein_coding Interval_4923 chr1 82648307 82648590 + 0 NA intron (ENSMUSG00000079465.8, intron 3 of 51) protein_coding-intron (ENSMUSG00000079465.8, intron 3 of 51) 13435 ENSMUSG00000065055.1 ENSMUSG00000065055 ENSMUST00000083121 n-R5s213 rRNA Interval_166596 chr9 61200239 61200653 + 0 NA Intergenic Intergenic -6233 ENSMUSG00000111449.1 ENSMUSG00000111449 ENSMUST00000214812 Gm34105 lincRNA Interval_14039 chr10 25887456 25888527 + 0 NA Intergenic Intergenic 4318 ENSMUSG00000112861.1 ENSMUSG00000112861 ENSMUST00000219770 Gm47930 processed_pseudogene Interval_17087 chr10 71291365 71293138 + 0 NA exon (ENSMUSG00000112813.1, exon 2 of 2) lincRNA-exon (ENSMUSG00000112813.1, exon 2 of 2) 4522 ENSMUSG00000112813.1 ENSMUSG00000112813 ENSMUST00000218529 Gm34376 lincRNA Interval_165763 chr9 52277954 52279121 + 0 NA Intergenic Intergenic -12662 ENSMUSG00000077796.1 ENSMUSG00000077796 ENSMUST00000104608 Gm25562 snoRNA Interval_156388 chr8 47866062 47867718 + 0 NA intron (ENSMUSG00000031563.8, intron 11 of 22) protein_coding-intron (ENSMUSG00000031563.8, intron 11 of 22) -32292 ENSMUSG00000064519.1 ENSMUSG00000064519 ENSMUST00000082585 n-R5s97 rRNA Interval_167825 chr9 72889973 72891106 + 0 NA TTS (ENSMUSG00000102330.1) TEC-TTS (ENSMUSG00000102330.1) 1494 ENSMUSG00000102330.1 ENSMUSG00000102330 ENSMUST00000193259 Gm37234 TEC Interval_87985 chr19 57582330 57583720 + 0 NA Intergenic Intergenic -1736 ENSMUSG00000117978.1 ENSMUSG00000117978 ENSMUST00000237779 Gm50286 processed_pseudogene Interval_596 chr1 8476914 8477453 + 0 NA intron (ENSMUSG00000025909.16, intron 15 of 20) protein_coding-intron (ENSMUSG00000025909.16, intron 11 of 16) -8358 ENSMUSG00000086235.1 ENSMUSG00000086235 ENSMUST00000140995 Gm16284 processed_pseudogene Interval_101965 chr3 13709552 13709836 + 0 NA intron (ENSMUSG00000039717.16, intron 1 of 5) protein_coding-intron (ENSMUSG00000039717.16, intron 2 of 2) -39549 ENSMUSG00000104514.1 ENSMUSG00000104514 ENSMUST00000192809 Gm37164 processed_pseudogene Interval_120541 chr4 149228845 149229107 + 0 NA intron (ENSMUSG00000063077.15, intron 22 of 49) protein_coding-intron (ENSMUSG00000063077.15, intron 20 of 46) -62205 ENSMUSG00000028961.15 ENSMUSG00000028961 ENSMUST00000143944 Pgd protein_coding Interval_170021 chr9 103708090 103709181 + 0 NA intron (ENSMUSG00000042757.16, intron 2 of 3) protein_coding-intron (ENSMUSG00000042757.16, intron 2 of 5) 53194 ENSMUSG00000042757.16 ENSMUSG00000042757 ENSMUST00000186455 Tmem108 protein_coding Interval_55872 chr14 101707230 101707711 + 0 NA Intergenic Intergenic -3964 ENSMUSG00000115110.1 ENSMUSG00000115110 ENSMUST00000227901 Gm49269 processed_pseudogene Interval_26662 chr11 59537185 59538894 + 0 NA Intergenic Intergenic -4717 ENSMUSG00000032691.14 ENSMUSG00000032691 ENSMUST00000149126 Nlrp3 protein_coding Interval_96701 chr2 127278158 127278584 + 0 NA intron (ENSMUSG00000027367.16, intron 2 of 3) protein_coding-intron (ENSMUSG00000027367.16, intron 1 of 2) -8317 ENSMUSG00000103957.1 ENSMUSG00000103957 ENSMUST00000192976 Gm10766 TEC Interval_78299 chr18 11816858 11817110 + 0 NA Intergenic Intergenic 23454 ENSMUSG00000084565.1 ENSMUSG00000084565 ENSMUST00000122616 Mir1901 miRNA Interval_51854 chr14 32986796 32987451 + 0 NA intron (ENSMUSG00000051506.17, intron 49 of 61) protein_coding-intron (ENSMUSG00000051506.17, intron 46 of 58) -8142 ENSMUSG00000041673.12 ENSMUSG00000041673 ENSMUST00000123910 Lrrc18 protein_coding Interval_104499 chr3 66895546 66895771 + 0 NA Intergenic Intergenic 12108 ENSMUSG00000103318.1 ENSMUSG00000103318 ENSMUST00000194313 Gm38356 processed_pseudogene Interval_49789 chr13 115163631 115164334 + 0 NA exon (ENSMUSG00000114872.1, exon 1 of 1) processed_pseudogene-exon (ENSMUSG00000114872.1, exon 1 of 1) 838 ENSMUSG00000114872.1 ENSMUSG00000114872 ENSMUST00000225121 Gm18759 processed_pseudogene Interval_140419 chr6 117956261 117957553 + 0 NA Intergenic Intergenic -20954 ENSMUSG00000004988.9 ENSMUSG00000004988 ENSMUST00000203842 Fxyd4 protein_coding Interval_447 chr1 5429770 5430495 + 0 NA Intergenic Intergenic 26585 ENSMUSG00000102907.1 ENSMUSG00000102907 ENSMUST00000194850 Gm38264 TEC Interval_135740 chr6 46205574 46206011 + 0 NA intron (ENSMUSG00000039419.17, intron 1 of 4) protein_coding-intron (ENSMUSG00000039419.17, intron 9 of 23) 71690 ENSMUSG00000107712.1 ENSMUSG00000107712 ENSMUST00000205102 Gm43870 TEC Interval_55460 chr14 87519831 87520236 + 0 NA intron (ENSMUSG00000022019.16, intron 12 of 13) protein_coding-intron (ENSMUSG00000022019.16, intron 12 of 13) -19066 ENSMUSG00000022019.16 ENSMUSG00000022019 ENSMUST00000227304 Tdrd3 protein_coding Interval_20843 chr10 121454759 121455874 + 0 NA intron (ENSMUSG00000112009.1, intron 1 of 1) protein_coding-intron (ENSMUSG00000025795.8, intron 1 of 4) 6897 ENSMUSG00000025795.8 ENSMUSG00000025795 ENSMUST00000219500 Rassf3 protein_coding Interval_126685 chr5 92047904 92049785 + 0 NA Intergenic Intergenic -4961 ENSMUSG00000029403.14 ENSMUSG00000029403 ENSMUST00000201895 Cdkl2 protein_coding Interval_150818 chr7 114968350 114968639 + 0 NA intron (ENSMUSG00000108379.1, intron 2 of 3) lincRNA-intron (ENSMUSG00000108379.1, intron 2 of 4) 17220 ENSMUSG00000108379.1 ENSMUSG00000108379 ENSMUST00000205795 A730082K24Rik lincRNA Interval_173786 chrX 104164445 104164662 + 0 NA intron (ENSMUSG00000046449.15, intron 1 of 4) protein_coding-intron (ENSMUSG00000046449.15, intron 1 of 3) 36632 ENSMUSG00000046449.15 ENSMUSG00000046449 ENSMUST00000056502 Nexmif protein_coding Interval_67167 chr16 44118290 44118483 + 0 NA intron (ENSMUSG00000052459.13, intron 1 of 3) protein_coding-intron (ENSMUSG00000052459.13, intron 1 of 14) 21319 ENSMUSG00000052459.13 ENSMUSG00000052459 ENSMUST00000147025 Atp6v1a protein_coding Interval_75529 chr17 67801878 67802785 + 0 NA intron (ENSMUSG00000032796.8, intron 45 of 62) protein_coding-intron (ENSMUSG00000032796.8, intron 45 of 62) 48732 ENSMUSG00000090955.1 ENSMUSG00000090955 ENSMUST00000166414 Gm17097 processed_pseudogene Interval_7813 chr1 133872851 133873173 + 0 NA Intergenic Intergenic -33519 ENSMUSG00000090208.1 ENSMUSG00000090208 ENSMUST00000160564 Gm15851 antisense Interval_68447 chr16 76948416 76948699 + 0 NA intron (ENSMUSG00000100857.2, intron 1 of 7) lincRNA-intron (ENSMUSG00000100857.2, intron 1 of 7) 6941 ENSMUSG00000116807.1 ENSMUSG00000116807 ENSMUST00000231248 Gm7501 processed_pseudogene Interval_62812 chr15 97153679 97153932 + 0 NA Intergenic Intergenic 13439 ENSMUSG00000116295.1 ENSMUSG00000116295 ENSMUST00000229491 Gm32885 lincRNA Interval_24342 chr11 32552711 32553030 + 0 NA intron (ENSMUSG00000020272.8, intron 1 of 18) protein_coding-intron (ENSMUSG00000020272.8, intron 1 of 18) -20789 ENSMUSG00000044056.3 ENSMUSG00000044056 ENSMUST00000109377 Efcab9 protein_coding Interval_102327 chr3 21948020 21948535 + 0 NA Intergenic Intergenic 50191 ENSMUSG00000106321.1 ENSMUSG00000106321 ENSMUST00000196313 Gm43674 lincRNA Interval_7637 chr1 132703129 132704153 + 0 NA intron (ENSMUSG00000026442.14, intron 1 of 2) protein_coding-intron (ENSMUSG00000026442.14, intron 1 of 26) -25714 ENSMUSG00000101126.1 ENSMUSG00000101126 ENSMUST00000189499 Gm10538 antisense Interval_1509 chr1 24421242 24421650 + 0 NA intron (ENSMUSG00000026141.13, intron 2 of 39) protein_coding-intron (ENSMUSG00000026141.13, intron 14 of 47) 31299 ENSMUSG00000026141.13 ENSMUSG00000026141 ENSMUST00000051344 Col19a1 protein_coding Interval_70408 chr17 9880285 9880480 + 0 NA intron (ENSMUSG00000117110.1, intron 3 of 3) lincRNA-intron (ENSMUSG00000117110.1, intron 3 of 3) 15963 ENSMUSG00000117110.1 ENSMUSG00000117110 ENSMUST00000233332 Gm49808 lincRNA Interval_53328 chr14 56203743 56205513 + 0 NA TTS (ENSMUSG00000015441.4) protein_coding-TTS (ENSMUSG00000015441.4) 6789 ENSMUSG00000015441.4 ENSMUSG00000015441 ENSMUST00000022757 Gzmf protein_coding Interval_128034 chr5 110416031 110417678 + 0 NA intron (ENSMUSG00000043323.17, intron 3 of 17) protein_coding-intron (ENSMUSG00000043323.17, intron 3 of 18) -31135 ENSMUSG00000105482.1 ENSMUSG00000105482 ENSMUST00000196305 Gm42596 antisense Interval_27311 chr11 65986669 65987072 + 0 NA intron (ENSMUSG00000056752.16, intron 4 of 30) protein_coding-intron (ENSMUSG00000056752.16, intron 41 of 68) 18325 ENSMUSG00000056752.16 ENSMUSG00000056752 ENSMUST00000142836 Dnah9 protein_coding Interval_130580 chr5 129007891 129008893 + 0 NA promoter-TSS (ENSMUSG00000029428.13) protein_coding-promoter-TSS (ENSMUSG00000029428.13) 154 ENSMUSG00000029428.13 ENSMUSG00000029428 ENSMUST00000199813 Stx2 protein_coding Interval_61822 chr15 84412374 84413554 + 0 NA intron (ENSMUSG00000062760.11, intron 3 of 4) protein_coding-intron (ENSMUSG00000062760.11, intron 3 of 4) 34133 ENSMUSG00000062760.11 ENSMUSG00000062760 ENSMUST00000186527 Shisal1 protein_coding Interval_114540 chr4 82389233 82391059 + 0 NA intron (ENSMUSG00000008575.17, intron 2 of 4) protein_coding-intron (ENSMUSG00000008575.17, intron 2 of 11) -49264 ENSMUSG00000084595.1 ENSMUSG00000084595 ENSMUST00000122646 n-R5s188 rRNA Interval_17298 chr10 75688666 75688980 + 0 NA intron (ENSMUSG00000020196.10, intron 2 of 2) protein_coding-intron (ENSMUSG00000020196.10, intron 28 of 36) 43797 ENSMUSG00000020196.10 ENSMUSG00000020196 ENSMUST00000218480 Cabin1 protein_coding Interval_22756 chr11 14840278 14840500 + 0 NA Intergenic Intergenic 60362 ENSMUSG00000082156.1 ENSMUSG00000082156 ENSMUST00000117791 Gm12008 processed_pseudogene Interval_113155 chr4 48667156 48667593 + 0 NA intron (ENSMUSG00000028348.7, intron 1 of 1) protein_coding-intron (ENSMUSG00000028348.7, intron 1 of 1) 3860 ENSMUSG00000028348.7 ENSMUSG00000028348 ENSMUST00000030033 Cavin4 protein_coding Interval_132889 chr5 148538728 148539636 + 0 NA intron (ENSMUSG00000001687.15, intron 2 of 5) protein_coding-intron (ENSMUSG00000001687.15, intron 1 of 4) 12474 ENSMUSG00000001687.15 ENSMUSG00000001687 ENSMUST00000201597 Ubl3 protein_coding Interval_136184 chr6 51848931 51849822 + 0 NA Intergenic Intergenic 22553 ENSMUSG00000059182.7 ENSMUSG00000059182 ENSMUST00000203313 Skap2 protein_coding Interval_119772 chr4 139858413 139859325 + 0 NA Intergenic Intergenic -25862 ENSMUSG00000028736.13 ENSMUSG00000028736 ENSMUST00000174681 Pax7 protein_coding Interval_15412 chr10 45681479 45681729 + 0 NA TTS (ENSMUSG00000111036.1) transcribed_processed_pseudogene-TTS (ENSMUSG00000111036.1) 618 ENSMUSG00000111036.1 ENSMUSG00000111036 ENSMUST00000216742 Gm47502 transcribed_processed_pseudogene Interval_116748 chr4 117084385 117084594 + 0 NA intron (ENSMUSG00000028683.14, intron 3 of 3) protein_coding-intron (ENSMUSG00000028683.14, intron 9 of 9) 17026 ENSMUSG00000028683.14 ENSMUSG00000028683 ENSMUST00000129587 Eif2b3 protein_coding Interval_50320 chr14 11827689 11828174 + 0 NA intron (ENSMUSG00000021745.14, intron 2 of 3) protein_coding-intron (ENSMUSG00000021745.14, intron 2 of 29) -39663 ENSMUSG00000114431.1 ENSMUSG00000114431 ENSMUST00000224051 Gm48601 TEC Interval_152911 chr7 139683408 139685097 + 0 NA promoter-TSS (ENSMUSG00000049571.18) protein_coding-promoter-TSS (ENSMUSG00000049571.18) -24097 ENSMUSG00000083626.1 ENSMUSG00000083626 ENSMUST00000118750 Gm4459 processed_pseudogene Interval_105757 chr3 89170664 89170957 + 0 NA TTS (ENSMUSG00000068917.12) protein_coding-TTS (ENSMUSG00000068917.12) -1355 ENSMUSG00000068917.12 ENSMUSG00000068917 ENSMUST00000139221 Clk2 protein_coding Interval_52752 chr14 49382328 49383665 + 0 NA intron (ENSMUSG00000021852.14, intron 1 of 2) protein_coding-intron (ENSMUSG00000021852.14, intron 1 of 7) 83160 ENSMUSG00000115096.1 ENSMUSG00000115096 ENSMUST00000228016 Gm48940 antisense Interval_5300 chr1 87336995 87338076 + 0 NA intron (ENSMUSG00000048000.15, intron 2 of 3) protein_coding-intron (ENSMUSG00000048000.15, intron 2 of 28) 4026 ENSMUSG00000095281.1 ENSMUSG00000095281 ENSMUST00000178461 Gm22549 snRNA Interval_155079 chr8 26226314 26227509 + 0 NA Intergenic Intergenic 7450 ENSMUSG00000105292.1 ENSMUSG00000105292 ENSMUST00000104842 Gm44299 miRNA Interval_170218 chr9 106269301 106270133 + 0 NA Intergenic Intergenic -11893 ENSMUSG00000023345.17 ENSMUSG00000023345 ENSMUST00000186366 Poc1a protein_coding Interval_110777 chr4 8265134 8265879 + 0 NA Intergenic Intergenic -26465 ENSMUSG00000041261.9 ENSMUSG00000041261 ENSMUST00000066674 Car8 protein_coding Interval_57782 chr15 19862971 19864844 + 0 NA Intergenic Intergenic 107503 ENSMUSG00000115233.1 ENSMUSG00000115233 ENSMUST00000226721 Gm46498 processed_pseudogene Interval_174291 chrX 143879109 143879325 + 0 NA intron (ENSMUSG00000031285.14, intron 3 of 5) protein_coding-intron (ENSMUSG00000031285.14, intron 3 of 6) -51873 ENSMUSG00000105967.1 ENSMUSG00000105967 ENSMUST00000197285 Gm47298 miRNA Interval_150985 chr7 117411016 117412641 + 0 NA intron (ENSMUSG00000030657.11, intron 1 of 6) protein_coding-intron (ENSMUSG00000030657.11, intron 1 of 11) 29966 ENSMUSG00000108693.1 ENSMUSG00000108693 ENSMUST00000205957 Gm45153 TEC Interval_38933 chr12 83921116 83922393 + 0 NA promoter-TSS (ENSMUSG00000021224.15) protein_coding-promoter-TSS (ENSMUSG00000021224.15) -21 ENSMUSG00000021224.15 ENSMUSG00000021224 ENSMUST00000222439 Numb protein_coding Interval_148077 chr7 79089044 79090064 + 0 NA intron (ENSMUSG00000030607.7, intron 5 of 16) protein_coding-intron (ENSMUSG00000030607.7, intron 5 of 16) -10197 ENSMUSG00000030607.7 ENSMUSG00000030607 ENSMUST00000206779 Acan protein_coding Interval_143991 chr7 18818273 18819282 + 0 NA exon (ENSMUSG00000004540.7, exon 3 of 5) protein_coding-exon (ENSMUSG00000004540.7, exon 3 of 5) 2830 ENSMUSG00000004540.7 ENSMUSG00000004540 ENSMUST00000004655 Psg17 protein_coding Interval_118527 chr4 132295839 132296252 + 0 NA TTS (ENSMUSG00000028899.11) protein_coding-TTS (ENSMUSG00000028899.11) 7340 ENSMUSG00000089687.2 ENSMUSG00000089687 ENSMUST00000040411 Rab42 protein_coding Interval_54432 chr14 69714168 69714526 + 0 NA Intergenic Intergenic -6794 ENSMUSG00000034194.18 ENSMUSG00000034194 ENSMUST00000147609 R3hcc1 protein_coding Interval_37414 chr12 67766568 67766887 + 0 NA Intergenic Intergenic 55669 ENSMUSG00000114128.1 ENSMUSG00000114128 ENSMUST00000222060 Gm47452 processed_pseudogene Interval_116017 chr4 107022771 107023362 + 0 NA promoter-TSS (ENSMUSG00000085581.1) antisense-promoter-TSS (ENSMUSG00000085581.1) -567 ENSMUSG00000085581.1 ENSMUSG00000085581 ENSMUST00000129617 Gm12786 antisense Interval_25730 chr11 51195046 51195300 + 0 NA intron (ENSMUSG00000086646.7, intron 2 of 3) lincRNA-intron (ENSMUSG00000086646.7, intron 2 of 3) -19351 ENSMUSG00000081296.1 ENSMUSG00000081296 ENSMUST00000118235 Gm12203 processed_pseudogene Interval_158633 chr8 84880777 84881039 + 0 NA intron (ENSMUSG00000003824.12, intron 1 of 1) protein_coding-intron (ENSMUSG00000003824.12, intron 2 of 3) 8797 ENSMUSG00000003824.12 ENSMUSG00000003824 ENSMUST00000144466 Syce2 protein_coding Interval_57849 chr15 23154179 23154444 + 0 NA promoter-TSS (ENSMUSG00000094031.1) snoRNA-promoter-TSS (ENSMUSG00000094031.1) -423 ENSMUSG00000094031.1 ENSMUSG00000094031 ENSMUST00000177548 Gm24656 snoRNA Interval_64663 chr16 13986349 13987921 + 0 NA promoter-TSS (ENSMUSG00000065968.8) protein_coding-promoter-TSS (ENSMUSG00000065968.8) -247 ENSMUSG00000065968.8 ENSMUSG00000065968 ENSMUST00000178021 Ifitm7 protein_coding Interval_82823 chr18 77225301 77225542 + 0 NA intron (ENSMUSG00000025425.18, intron 2 of 7) protein_coding-intron (ENSMUSG00000025425.18, intron 2 of 7) -6094 ENSMUSG00000082784.1 ENSMUSG00000082784 ENSMUST00000118893 Gm15957 processed_pseudogene Interval_110691 chr4 6476141 6477481 + 0 NA Intergenic Intergenic -22715 ENSMUSG00000028245.15 ENSMUSG00000028245 ENSMUST00000124656 Nsmaf protein_coding Interval_80330 chr18 39314614 39315344 + 0 NA intron (ENSMUSG00000036452.18, intron 20 of 21) protein_coding-intron (ENSMUSG00000036452.18, intron 20 of 22) -12289 ENSMUSG00000086312.1 ENSMUSG00000086312 ENSMUST00000128894 Gm15336 antisense Interval_140777 chr6 121231712 121232509 + 0 NA Intergenic Intergenic -5957 ENSMUSG00000086527.1 ENSMUSG00000086527 ENSMUST00000124853 Gm15856 antisense Interval_102642 chr3 28804929 28806059 + 0 NA promoter-TSS (ENSMUSG00000039221.10) protein_coding-promoter-TSS (ENSMUSG00000039221.10) -158 ENSMUSG00000103827.1 ENSMUSG00000103827 ENSMUST00000193336 Gm32950 lincRNA Interval_44878 chr13 49311401 49311962 + 0 NA intron (ENSMUSG00000037946.11, intron 2 of 14) protein_coding-intron (ENSMUSG00000037946.11, intron 2 of 14) -2441 ENSMUSG00000037946.11 ENSMUSG00000037946 ENSMUST00000110086 Fgd3 protein_coding Interval_56969 chr14 124401509 124401907 + 0 NA intron (ENSMUSG00000025551.13, intron 1 of 4) protein_coding-intron (ENSMUSG00000025551.13, intron 1 of 4) 3017 ENSMUSG00000115472.1 ENSMUSG00000115472 ENSMUST00000228023 Gm49070 processed_pseudogene Interval_142592 chr6 143697771 143698030 + 0 NA Intergenic Intergenic -46612 ENSMUSG00000086887.1 ENSMUSG00000086887 ENSMUST00000150559 1700060C16Rik lincRNA Interval_150481 chr7 111048715 111050023 + 0 NA exon (ENSMUSG00000005609.16, exon 17 of 25) protein_coding-exon (ENSMUSG00000005609.16, exon 17 of 25) -4421 ENSMUSG00000005609.16 ENSMUSG00000005609 ENSMUST00000209912 Ctr9 protein_coding Interval_27014 chr11 62377013 62377797 + 0 NA intron (ENSMUSG00000018501.17, intron 3 of 3) protein_coding-intron (ENSMUSG00000018501.17, intron 18 of 45) 5949 ENSMUSG00000018501.17 ENSMUSG00000018501 ENSMUST00000141447 Ncor1 protein_coding Interval_162901 chr9 12310430 12310629 + 0 NA Intergenic Intergenic 76535 ENSMUSG00000111810.1 ENSMUSG00000111810 ENSMUST00000217033 Gm29785 processed_pseudogene Interval_151072 chr7 118304888 118305563 + 0 NA Intergenic Intergenic -24261 ENSMUSG00000108856.1 ENSMUSG00000108856 ENSMUST00000208337 Gm35309 lincRNA Interval_170578 chr9 108987883 108988296 + 0 NA TTS (ENSMUSG00000049699.4) protein_coding-TTS (ENSMUSG00000049699.4) 2079 ENSMUSG00000049699.4 ENSMUSG00000049699 ENSMUST00000052724 Ucn2 protein_coding Interval_9288 chr1 155854579 155854824 + 0 NA promoter-TSS (ENSMUSG00000103717.1) processed_pseudogene-promoter-TSS (ENSMUSG00000103717.1) -748 ENSMUSG00000103717.1 ENSMUSG00000103717 ENSMUST00000193803 Gm38038 processed_pseudogene Interval_152744 chr7 137127692 137128362 + 0 NA exon (ENSMUSG00000054612.4, exon 5 of 5) protein_coding-exon (ENSMUSG00000054612.4, exon 5 of 5) -39793 ENSMUSG00000110174.1 ENSMUSG00000110174 ENSMUST00000211656 Gm45499 processed_pseudogene Interval_135404 chr6 39117540 39119352 + 0 NA promoter-TSS (ENSMUSG00000038507.6) protein_coding-promoter-TSS (ENSMUSG00000038507.6) -27 ENSMUSG00000073144.4 ENSMUSG00000073144 ENSMUST00000146981 4930599N23Rik antisense Interval_38402 chr12 78748268 78749755 + 0 NA promoter-TSS (ENSMUSG00000021112.9) protein_coding-promoter-TSS (ENSMUSG00000021112.9) 85 ENSMUSG00000021112.9 ENSMUSG00000021112 ENSMUST00000219180 Mpp5 protein_coding Interval_94081 chr2 83709784 83710863 + 0 NA Intergenic Intergenic -9207 ENSMUSG00000085450.1 ENSMUSG00000085450 ENSMUST00000122851 Gm13686 antisense Interval_150305 chr7 109492702 109494621 + 0 NA promoter-TSS (ENSMUSG00000031026.15) protein_coding-promoter-TSS (ENSMUSG00000031026.15) -18527 ENSMUSG00000031026.15 ENSMUSG00000031026 ENSMUST00000137704 Trim66 protein_coding Interval_167482 chr9 69814573 69815337 + 0 NA intron (ENSMUSG00000097623.7, intron 2 of 4) antisense-intron (ENSMUSG00000097623.7, intron 2 of 5) -21804 ENSMUSG00000111286.1 ENSMUSG00000111286 ENSMUST00000216018 Gm18745 processed_pseudogene Interval_97915 chr2 145655412 145656888 + 0 NA Intergenic Intergenic -19065 ENSMUSG00000001768.16 ENSMUSG00000001768 ENSMUST00000145874 Rin2 protein_coding Interval_55439 chr14 87299187 87299452 + 0 NA Intergenic Intergenic -46926 ENSMUSG00000088536.1 ENSMUSG00000088536 ENSMUST00000157911 Gm23278 snoRNA Interval_8510 chr1 140409806 140410023 + 0 NA intron (ENSMUSG00000052726.16, intron 8 of 27) protein_coding-intron (ENSMUSG00000052726.16, intron 8 of 26) 143427 ENSMUSG00000102698.1 ENSMUSG00000102698 ENSMUST00000195546 Gm37777 TEC Interval_22096 chr11 6323914 6324111 + 0 NA intron (ENSMUSG00000020456.17, intron 4 of 22) protein_coding-intron (ENSMUSG00000020456.17, intron 4 of 22) 32027 ENSMUSG00000020456.17 ENSMUSG00000020456 ENSMUST00000081894 Ogdh protein_coding Interval_30992 chr11 97619757 97620000 + 0 NA TTS (ENSMUSG00000085860.1) processed_transcript-TTS (ENSMUSG00000085860.1) 4896 ENSMUSG00000085860.1 ENSMUSG00000085860 ENSMUST00000145262 2410003L11Rik processed_transcript Interval_113499 chr4 55369956 55371072 + 0 NA intron (ENSMUSG00000028426.10, intron 4 of 5) protein_coding-intron (ENSMUSG00000028426.10, intron 4 of 9) 20424 ENSMUSG00000028426.10 ENSMUSG00000028426 ENSMUST00000156263 Rad23b protein_coding Interval_39640 chr12 91740486 91740798 + 0 NA exon (ENSMUSG00000020961.15, exon 3 of 7) protein_coding-exon (ENSMUSG00000020961.15, exon 3 of 7) 30528 ENSMUSG00000020961.15 ENSMUSG00000020961 ENSMUST00000166008 Ston2 protein_coding Interval_10235 chr1 167377536 167378268 + 0 NA intron (ENSMUSG00000026688.5, intron 2 of 5) protein_coding-intron (ENSMUSG00000026688.5, intron 2 of 5) 15939 ENSMUSG00000026688.5 ENSMUSG00000026688 ENSMUST00000028005 Mgst3 protein_coding Interval_69312 chr16 92126724 92128373 + 0 NA intron (ENSMUSG00000116747.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000116747.1, intron 1 of 2) 1260 ENSMUSG00000116747.1 ENSMUSG00000116747 ENSMUST00000231220 Gm41496 lincRNA Interval_54662 chr14 73081010 73081496 + 0 NA Intergenic Intergenic -32139 ENSMUSG00000033470.12 ENSMUSG00000033470 ENSMUST00000228821 Cysltr2 protein_coding Interval_118552 chr4 132462953 132464288 + 0 NA promoter-TSS (ENSMUSG00000066042.4) protein_coding-promoter-TSS (ENSMUSG00000066042.4) -289 ENSMUSG00000066042.4 ENSMUSG00000066042 ENSMUST00000123604 Med18 protein_coding Interval_118496 chr4 132088525 132089662 + 0 NA Intergenic Intergenic -4798 ENSMUSG00000083368.1 ENSMUSG00000083368 ENSMUST00000122137 Gm13214 processed_pseudogene Interval_104992 chr3 79553129 79553622 + 0 NA intron (ENSMUSG00000061175.12, intron 1 of 17) protein_coding-intron (ENSMUSG00000061175.12, intron 1 of 16) -1182 ENSMUSG00000089746.1 ENSMUSG00000089746 ENSMUST00000161319 Gm3513 sense_intronic Interval_122736 chr5 24981523 24982108 + 0 NA intron (ENSMUSG00000028944.14, intron 3 of 15) protein_coding-intron (ENSMUSG00000028944.14, intron 3 of 15) -4027 ENSMUSG00000059631.6 ENSMUSG00000059631 ENSMUST00000075081 1500035N22Rik lincRNA Interval_18309 chr10 84758437 84760952 + 0 NA intron (ENSMUSG00000020037.15, intron 1 of 17) protein_coding-intron (ENSMUSG00000020037.15, intron 1 of 17) -2544 ENSMUSG00000020037.15 ENSMUSG00000020037 ENSMUST00000095388 Rfx4 protein_coding Interval_115689 chr4 102229759 102230017 + 0 NA intron (ENSMUSG00000028525.16, intron 3 of 6) protein_coding-intron (ENSMUSG00000028525.16, intron 3 of 16) -25342 ENSMUSG00000028525.16 ENSMUSG00000028525 ENSMUST00000106901 Pde4b protein_coding Interval_59426 chr15 53058300 53058561 + 0 NA Intergenic Intergenic 49438 ENSMUSG00000061731.9 ENSMUSG00000061731 ENSMUST00000140798 Ext1 protein_coding Interval_64432 chr16 11322410 11323969 + 0 NA intron (ENSMUSG00000071669.14, intron 1 of 20) protein_coding-intron (ENSMUSG00000071669.14, intron 1 of 7) 281 ENSMUSG00000071669.14 ENSMUSG00000071669 ENSMUST00000134941 Snx29 protein_coding Interval_94595 chr2 92499813 92500304 + 0 NA intron (ENSMUSG00000085261.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000085261.1, intron 1 of 1) 16132 ENSMUSG00000085261.1 ENSMUSG00000085261 ENSMUST00000141341 Gm13814 lincRNA Interval_76755 chr17 83853964 83854780 + 0 NA promoter-TSS (ENSMUSG00000097254.2) lincRNA-promoter-TSS (ENSMUSG00000097254.2) 46 ENSMUSG00000097254.2 ENSMUSG00000097254 ENSMUST00000234697 C430042M11Rik lincRNA Interval_142039 chr6 136689876 136691538 + 0 NA Intergenic Intergenic 4576 ENSMUSG00000107850.1 ENSMUSG00000107850 ENSMUST00000203395 Gm4714 processed_pseudogene Interval_112158 chr4 35014726 35015982 + 0 NA intron (ENSMUSG00000073910.10, intron 2 of 3) protein_coding-intron (ENSMUSG00000073910.10, intron 2 of 3) 53134 ENSMUSG00000086792.1 ENSMUSG00000086792 ENSMUST00000144419 Gm12364 antisense Interval_163592 chr9 22381641 22382107 + 0 NA intron (ENSMUSG00000036777.8, intron 2 of 23) protein_coding-intron (ENSMUSG00000036777.8, intron 2 of 23) -10095 ENSMUSG00000111069.1 ENSMUSG00000111069 ENSMUST00000214468 Gm48646 sense_intronic Interval_51422 chr14 27401473 27402111 + 0 NA exon (ENSMUSG00000021895.10, exon 11 of 11) protein_coding-exon (ENSMUSG00000021895.10, exon 11 of 11) -20942 ENSMUSG00000093034.1 ENSMUSG00000093034 ENSMUST00000175293 Gm23633 miRNA Interval_123601 chr5 33705168 33705654 + 0 NA Intergenic Intergenic 18258 ENSMUSG00000106896.1 ENSMUSG00000106896 ENSMUST00000202923 G630022F23Rik TEC Interval_91570 chr2 43609261 43609471 + 0 NA intron (ENSMUSG00000026866.16, intron 8 of 12) protein_coding-intron (ENSMUSG00000026866.16, intron 8 of 13) -61564 ENSMUSG00000026866.16 ENSMUSG00000026866 ENSMUST00000148855 Kynu protein_coding Interval_65761 chr16 27979866 27980054 + 0 NA Intergenic Intergenic -9615 ENSMUSG00000116978.1 ENSMUSG00000116978 ENSMUST00000231476 Gm49765 processed_pseudogene Interval_102720 chr3 30568955 30569150 + 0 NA Intergenic Intergenic -4809 ENSMUSG00000102256.1 ENSMUSG00000102256 ENSMUST00000191792 Gm38258 lincRNA Interval_146030 chr7 43326159 43327186 + 0 NA Intergenic Intergenic -13378 ENSMUSG00000012640.16 ENSMUSG00000012640 ENSMUST00000135130 Zfp715 protein_coding Interval_104498 chr3 66886104 66887144 + 0 NA Intergenic Intergenic 4274 ENSMUSG00000103700.1 ENSMUSG00000103700 ENSMUST00000195167 Gm6555 processed_pseudogene Interval_141490 chr6 128597125 128597738 + 0 NA Intergenic Intergenic -9406 ENSMUSG00000107503.1 ENSMUSG00000107503 ENSMUST00000203539 Gm44009 lincRNA Interval_130010 chr5 123699152 123699493 + 0 NA TTS (ENSMUSG00000029427.11) protein_coding-TTS (ENSMUSG00000029427.11) 14547 ENSMUSG00000104694.1 ENSMUSG00000104694 ENSMUST00000198221 Gm43797 TEC Interval_108312 chr3 123579315 123579493 + 0 NA intron (ENSMUSG00000027977.15, intron 3 of 6) protein_coding-intron (ENSMUSG00000027977.15, intron 5 of 12) -19275 ENSMUSG00000027977.15 ENSMUSG00000027977 ENSMUST00000132896 Ndst3 protein_coding Interval_77110 chr17 86642117 86642426 + 0 NA intron (ENSMUSG00000045038.14, intron 14 of 14) protein_coding-intron (ENSMUSG00000045038.14, intron 15 of 15) 43225 ENSMUSG00000117568.1 ENSMUSG00000117568 ENSMUST00000234033 Gm18832 processed_pseudogene Interval_59649 chr15 57543819 57544205 + 0 NA Intergenic Intergenic -55141 ENSMUSG00000115629.1 ENSMUSG00000115629 ENSMUST00000227877 Gm49235 processed_pseudogene Interval_165626 chr9 50493330 50494783 + 0 NA promoter-TSS (ENSMUSG00000032068.14) protein_coding-promoter-TSS (ENSMUSG00000032068.14) -471 ENSMUSG00000032068.14 ENSMUSG00000032068 ENSMUST00000188047 Plet1 protein_coding Interval_45572 chr13 55962978 55963842 + 0 NA exon (ENSMUSG00000114493.2, exon 4 of 6) antisense-exon (ENSMUSG00000114493.2, exon 4 of 6) 66824 ENSMUSG00000114229.1 ENSMUSG00000114229 ENSMUST00000225745 Gm47072 processed_pseudogene Interval_120639 chr4 149821637 149822590 + 0 NA Intergenic Intergenic 4349 ENSMUSG00000106221.1 ENSMUSG00000106221 ENSMUST00000199807 Gm47301 miRNA Interval_139887 chr6 112388952 112389170 + 0 NA Intergenic Intergenic -1043 ENSMUSG00000034387.13 ENSMUSG00000034387 ENSMUST00000238755 Ssu2 protein_coding Interval_19337 chr10 97059359 97060225 + 0 NA intron (ENSMUSG00000111924.1, intron 4 of 4) lincRNA-intron (ENSMUSG00000111924.1, intron 4 of 4) 24024 ENSMUSG00000111924.1 ENSMUSG00000111924 ENSMUST00000219048 4930556N09Rik lincRNA Interval_114799 chr4 85343647 85343890 + 0 NA intron (ENSMUSG00000028488.15, intron 1 of 7) protein_coding-intron (ENSMUSG00000028488.15, intron 1 of 8) -32573 ENSMUSG00000028488.15 ENSMUSG00000028488 ENSMUST00000133109 Sh3gl2 protein_coding Interval_102885 chr3 32529198 32530213 + 0 NA intron (ENSMUSG00000027668.13, intron 1 of 6) protein_coding-intron (ENSMUSG00000027668.13, intron 1 of 17) -17361 ENSMUSG00000104231.1 ENSMUSG00000104231 ENSMUST00000192741 Gm37592 antisense Interval_105824 chr3 89531008 89531215 + 0 NA intron (ENSMUSG00000000794.9, intron 1 of 7) protein_coding-intron (ENSMUSG00000000794.9, intron 1 of 7) 76570 ENSMUSG00000027952.16 ENSMUSG00000027952 ENSMUST00000184515 Pmvk protein_coding Interval_93309 chr2 71837825 71838445 + 0 NA promoter-TSS (ENSMUSG00000027111.16) protein_coding-promoter-TSS (ENSMUSG00000027111.16) -35211 ENSMUSG00000006494.11 ENSMUSG00000006494 ENSMUST00000129427 Pdk1 protein_coding Interval_84679 chr19 14976919 14977170 + 0 NA Intergenic Intergenic -16278 ENSMUSG00000063586.1 ENSMUSG00000063586 ENSMUST00000072982 Gm5513 processed_pseudogene Interval_1323 chr1 20612526 20613123 + 0 NA exon (ENSMUSG00000043760.16, exon 4 of 67) protein_coding-exon (ENSMUSG00000043760.16, exon 4 of 67) 5240 ENSMUSG00000043760.16 ENSMUSG00000043760 ENSMUST00000128051 Pkhd1 protein_coding Interval_168580 chr9 83780598 83781109 + 0 NA intron (ENSMUSG00000032262.13, intron 3 of 3) protein_coding-intron (ENSMUSG00000032262.13, intron 5 of 5) 25424 ENSMUSG00000032262.13 ENSMUSG00000032262 ENSMUST00000183614 Elovl4 protein_coding Interval_9020 chr1 153115144 153115997 + 0 NA exon (ENSMUSG00000042751.14, exon 11 of 11) protein_coding-exon (ENSMUSG00000042751.14, exon 11 of 11) 11664 ENSMUSG00000026479.13 ENSMUSG00000026479 ENSMUST00000188831 Lamc2 protein_coding Interval_4118 chr1 69277452 69277952 + 0 NA Intergenic Intergenic -99619 ENSMUSG00000101387.1 ENSMUSG00000101387 ENSMUST00000187740 Pced1c-ps processed_pseudogene Interval_47836 chr13 93648564 93649377 + 0 NA Intergenic Intergenic -11404 ENSMUSG00000074768.6 ENSMUSG00000074768 ENSMUST00000124193 Bhmt protein_coding Interval_142649 chr6 144704527 144705074 + 0 NA intron (ENSMUSG00000041540.16, intron 1 of 6) protein_coding-intron (ENSMUSG00000041540.16, intron 1 of 13) -16111 ENSMUSG00000086282.1 ENSMUSG00000086282 ENSMUST00000155562 Sox5os4 antisense Interval_171856 chr9 121797656 121798276 + 0 NA TTS (ENSMUSG00000079235.10) protein_coding-TTS (ENSMUSG00000079235.10) -6112 ENSMUSG00000032523.11 ENSMUSG00000032523 ENSMUST00000217652 Hhatl protein_coding Interval_38451 chr12 79122815 79123289 + 0 NA Intergenic Intergenic -7725 ENSMUSG00000021125.6 ENSMUSG00000021125 ENSMUST00000021550 Arg2 protein_coding Interval_129902 chr5 122994201 122995349 + 0 NA intron (ENSMUSG00000056735.5, intron 2 of 2) antisense-intron (ENSMUSG00000056735.5, intron 2 of 2) 5421 ENSMUSG00000056735.5 ENSMUSG00000056735 ENSMUST00000148466 A930024E05Rik antisense Interval_66250 chr16 32643649 32645904 + 0 NA promoter-TSS (ENSMUSG00000022791.19) protein_coding-promoter-TSS (ENSMUSG00000022791.19) 23421 ENSMUSG00000075265.4 ENSMUSG00000075265 ENSMUST00000141256 Tnk2os antisense Interval_50388 chr14 12350642 12350957 + 0 NA Intergenic Intergenic -4955 ENSMUSG00000021743.6 ENSMUSG00000021743 ENSMUST00000224023 Fezf2 protein_coding Interval_136644 chr6 56912843 56913140 + 0 NA intron (ENSMUSG00000029780.14, intron 1 of 9) protein_coding-intron (ENSMUSG00000029780.14, intron 1 of 8) -6409 ENSMUSG00000108260.1 ENSMUSG00000108260 ENSMUST00000204973 Gm3793 TEC Interval_115465 chr4 99180611 99181039 + 0 NA Intergenic Intergenic -13322 ENSMUSG00000028550.15 ENSMUSG00000028550 ENSMUST00000152121 Atg4c protein_coding Interval_144827 chr7 28487991 28488358 + 0 NA intron (ENSMUSG00000109336.1, intron 1 of 12) protein_coding-intron (ENSMUSG00000109336.1, intron 1 of 12) -4376 ENSMUSG00000099417.1 ENSMUSG00000099417 ENSMUST00000186274 1700028B04Rik transcribed_processed_pseudogene Interval_111750 chr4 27270631 27271279 + 0 NA Intergenic Intergenic -48551 ENSMUSG00000080958.1 ENSMUSG00000080958 ENSMUST00000118849 Gm11902 processed_pseudogene Interval_151943 chr7 127685409 127687253 + 0 NA intron (ENSMUSG00000030814.17, intron 4 of 4) protein_coding-intron (ENSMUSG00000030814.17, intron 4 of 4) -5604 ENSMUSG00000108801.1 ENSMUSG00000108801 ENSMUST00000205284 Gm39090 lincRNA Interval_41093 chr12 111127890 111128137 + 0 NA Intergenic Intergenic 36813 ENSMUSG00000113200.1 ENSMUSG00000113200 ENSMUST00000221105 Gm48632 TEC Interval_58635 chr15 36709713 36710153 + 0 NA Intergenic Intergenic -13714 ENSMUSG00000115103.1 ENSMUSG00000115103 ENSMUST00000226969 Gm49263 lincRNA Interval_128989 chr5 116475745 116476520 + 0 NA TTS (ENSMUSG00000063919.11) protein_coding-TTS (ENSMUSG00000063919.11) -8544 ENSMUSG00000063919.11 ENSMUSG00000063919 ENSMUST00000201430 Srrm4 protein_coding Interval_142529 chr6 143099294 143100524 + 0 NA promoter-TSS (ENSMUSG00000030279.15) protein_coding-promoter-TSS (ENSMUSG00000030279.15) 181 ENSMUSG00000030279.15 ENSMUSG00000030279 ENSMUST00000205079 C2cd5 protein_coding Interval_54463 chr14 69965205 69966137 + 0 NA intron (ENSMUSG00000022085.4, intron 4 of 6) protein_coding-intron (ENSMUSG00000022085.4, intron 4 of 6) 91696 ENSMUSG00000114446.1 ENSMUSG00000114446 ENSMUST00000224990 Gm33524 antisense Interval_157286 chr8 69016603 69017046 + 0 NA Intergenic Intergenic -15141 ENSMUSG00000110594.1 ENSMUSG00000110594 ENSMUST00000212717 Gm33103 lincRNA Interval_8973 chr1 152831803 152833735 + 0 NA intron (ENSMUSG00000026480.12, intron 11 of 15) protein_coding-intron (ENSMUSG00000026480.12, intron 10 of 14) 16151 ENSMUSG00000042772.15 ENSMUSG00000042772 ENSMUST00000188937 Smg7 protein_coding Interval_6157 chr1 98200987 98201734 + 0 NA Intergenic Intergenic 27712 ENSMUSG00000100711.1 ENSMUSG00000100711 ENSMUST00000189232 Gm29461 lincRNA Interval_78996 chr18 23794209 23795885 + 0 NA intron (ENSMUSG00000024277.14, intron 2 of 7) protein_coding-intron (ENSMUSG00000024277.14, intron 2 of 7) -20058 ENSMUSG00000098607.1 ENSMUSG00000098607 ENSMUST00000184278 Mir6360 miRNA Interval_75863 chr17 72151536 72151884 + 0 NA intron (ENSMUSG00000055471.7, intron 4 of 4) protein_coding-intron (ENSMUSG00000055471.7, intron 4 of 28) -104548 ENSMUSG00000117046.1 ENSMUSG00000117046 ENSMUST00000233853 Gm19183 processed_pseudogene Interval_67074 chr16 42608920 42609621 + 0 NA Intergenic Intergenic -54656 ENSMUSG00000116679.1 ENSMUSG00000116679 ENSMUST00000232064 Gm49739 processed_pseudogene Interval_27644 chr11 69251040 69251936 + 0 NA Intergenic Intergenic 10889 ENSMUSG00000089438.1 ENSMUSG00000089438 ENSMUST00000158813 Gm23194 snRNA Interval_74342 chr17 49171252 49172879 + 0 NA Intergenic Intergenic -6307 ENSMUSG00000117115.1 ENSMUSG00000117115 ENSMUST00000233339 Gm9586 processed_pseudogene Interval_22331 chr11 8871371 8871611 + 0 NA intron (ENSMUSG00000046634.12, intron 23 of 42) protein_coding-intron (ENSMUSG00000046634.12, intron 30 of 49) 13805 ENSMUSG00000082095.1 ENSMUSG00000082095 ENSMUST00000119652 Gm11991 processed_pseudogene Interval_173119 chrX 72572687 72573130 + 0 NA intron (ENSMUSG00000031343.13, intron 1 of 9) protein_coding-intron (ENSMUSG00000031343.13, intron 1 of 9) 17186 ENSMUSG00000076455.1 ENSMUSG00000076455 ENSMUST00000103256 Mir767 miRNA Interval_144740 chr7 27933029 27934308 + 0 NA Intergenic Intergenic -5646 ENSMUSG00000070709.12 ENSMUSG00000070709 ENSMUST00000152330 Zfp974 protein_coding Interval_116814 chr4 117411616 117411988 + 0 NA intron (ENSMUSG00000028677.19, intron 2 of 2) protein_coding-intron (ENSMUSG00000028677.19, intron 2 of 14) -34148 ENSMUSG00000086876.1 ENSMUSG00000086876 ENSMUST00000136115 Gm12828 antisense Interval_149623 chr7 100120765 100121888 + 0 NA promoter-TSS (ENSMUSG00000030726.16) protein_coding-promoter-TSS (ENSMUSG00000030726.16) -19866 ENSMUSG00000030726.16 ENSMUSG00000030726 ENSMUST00000156202 Pold3 protein_coding Interval_68306 chr16 72914959 72915147 + 0 NA intron (ENSMUSG00000022883.11, intron 3 of 28) protein_coding-intron (ENSMUSG00000022883.11, intron 3 of 28) -61296 ENSMUSG00000022883.11 ENSMUSG00000022883 ENSMUST00000232432 Robo1 protein_coding Interval_58658 chr15 36873364 36874089 + 0 NA intron (ENSMUSG00000072618.2, intron 1 of 1) lincRNA-intron (ENSMUSG00000072618.2, intron 1 of 1) 6090 ENSMUSG00000072618.2 ENSMUSG00000072618 ENSMUST00000100713 Gm10384 lincRNA Interval_31612 chr11 101708391 101708995 + 0 NA Intergenic Intergenic -24336 ENSMUSG00000034931.15 ENSMUSG00000034931 ENSMUST00000141461 Dhx8 protein_coding Interval_28849 chr11 78771794 78772862 + 0 NA Intergenic Intergenic -17806 ENSMUSG00000080600.2 ENSMUSG00000080600 ENSMUST00000116950 Gm23840 miRNA Interval_117938 chr4 127198521 127201656 + 0 NA intron (ENSMUSG00000042388.14, intron 4 of 11) protein_coding-intron (ENSMUSG00000042388.14, intron 4 of 11) -3218 ENSMUSG00000042388.14 ENSMUSG00000042388 ENSMUST00000137062 Dlgap3 protein_coding Interval_114813 chr4 85569914 85570495 + 0 NA intron (ENSMUSG00000066113.16, intron 1 of 3) protein_coding-intron (ENSMUSG00000028488.15, intron 7 of 7) 56032 ENSMUSG00000066113.16 ENSMUSG00000066113 ENSMUST00000107177 Adamtsl1 protein_coding Interval_88681 chr2 9669381 9670164 + 0 NA Intergenic Intergenic -38431 ENSMUSG00000104276.1 ENSMUSG00000104276 ENSMUST00000191950 Gm37866 TEC Interval_4214 chr1 71650585 71651412 + 0 NA intron (ENSMUSG00000026193.15, intron 2 of 43) protein_coding-intron (ENSMUSG00000026193.15, intron 2 of 45) -1890 ENSMUSG00000073652.10 ENSMUSG00000073652 ENSMUST00000125934 Apol7d antisense Interval_146693 chr7 49476290 49477336 + 0 NA intron (ENSMUSG00000052512.17, intron 10 of 38) protein_coding-intron (ENSMUSG00000052512.17, intron 10 of 37) 7101 ENSMUSG00000102148.1 ENSMUSG00000102148 ENSMUST00000193746 Gm38059 TEC Interval_3669 chr1 60546657 60546875 + 0 NA intron (ENSMUSG00000026014.15, intron 1 of 3) protein_coding-intron (ENSMUSG00000026014.15, intron 1 of 15) 9746 ENSMUSG00000084400.1 ENSMUSG00000084400 ENSMUST00000117433 Gm11576 processed_pseudogene Interval_13595 chr10 20090131 20092550 + 0 NA intron (ENSMUSG00000071369.11, intron 4 of 6) protein_coding-intron (ENSMUSG00000071369.11, intron 14 of 29) -33461 ENSMUSG00000071369.11 ENSMUSG00000071369 ENSMUST00000156369 Map3k5 protein_coding Interval_133856 chr6 13571566 13573215 + 0 NA Intergenic Intergenic 22884 ENSMUSG00000095489.1 ENSMUSG00000095489 ENSMUST00000179274 Gm25737 snRNA Interval_10917 chr1 176983818 176984091 + 0 NA intron (ENSMUSG00000026504.17, intron 17 of 18) protein_coding-intron (ENSMUSG00000026504.17, intron 16 of 17) 9718 ENSMUSG00000103251.1 ENSMUSG00000103251 ENSMUST00000191687 Gm37519 TEC Interval_26753 chr11 60222365 60223378 + 0 NA promoter-TSS (ENSMUSG00000020538.15) protein_coding-promoter-TSS (ENSMUSG00000020538.15) 16305 ENSMUSG00000000538.18 ENSMUSG00000000538 ENSMUST00000142225 Tom1l2 protein_coding Interval_13492 chr10 18642969 18645300 + 0 NA intron (ENSMUSG00000019852.7, intron 12 of 33) protein_coding-intron (ENSMUSG00000019852.7, intron 12 of 32) -78179 ENSMUSG00000111173.1 ENSMUSG00000111173 ENSMUST00000215943 Gm48297 processed_pseudogene Interval_117475 chr4 123992633 123992840 + 0 NA Intergenic Intergenic 66502 ENSMUSG00000082515.1 ENSMUSG00000082515 ENSMUST00000118389 Gm12902 processed_pseudogene Interval_27001 chr11 62309298 62309566 + 0 NA intron (ENSMUSG00000042298.18, intron 6 of 7) protein_coding-intron (ENSMUSG00000042298.18, intron 8 of 9) -4262 ENSMUSG00000081340.1 ENSMUSG00000081340 ENSMUST00000119805 Gm12275 processed_pseudogene Interval_68866 chr16 87690767 87691945 + 0 NA Intergenic Intergenic -7648 ENSMUSG00000025612.5 ENSMUSG00000025612 ENSMUST00000156958 Bach1 protein_coding Interval_106947 chr3 102130458 102130935 + 0 NA exon (ENSMUSG00000105342.1, exon 1 of 1) sense_intronic-exon (ENSMUSG00000105342.1, exon 1 of 1) 758 ENSMUSG00000105342.1 ENSMUSG00000105342 ENSMUST00000196994 Gm43244 sense_intronic Interval_76298 chr17 78885195 78885987 + 0 NA intron (ENSMUSG00000038045.14, intron 6 of 6) protein_coding-intron (ENSMUSG00000038045.14, intron 6 of 6) -3043 ENSMUSG00000024079.4 ENSMUSG00000024079 ENSMUST00000171451 Eif2ak2 protein_coding Interval_127181 chr5 100871767 100872720 + 0 NA intron (ENSMUSG00000029314.14, intron 4 of 13) protein_coding-intron (ENSMUSG00000029314.14, intron 3 of 12) -11890 ENSMUSG00000106178.1 ENSMUSG00000106178 ENSMUST00000197115 Gm42987 TEC Interval_53773 chr14 61647341 61649449 + 0 NA promoter-TSS (ENSMUSG00000097997.1) lincRNA-promoter-TSS (ENSMUSG00000097997.1) -243 ENSMUSG00000098626.1 ENSMUSG00000098626 ENSMUST00000184720 Gm27972 misc_RNA Interval_36756 chr12 53119124 53119889 + 0 NA intron (ENSMUSG00000061603.8, intron 11 of 11) protein_coding-intron (ENSMUSG00000061603.8, intron 12 of 13) -72680 ENSMUSG00000070192.1 ENSMUSG00000070192 ENSMUST00000093682 n-R5s58 rRNA Interval_63410 chr15 100898317 100898558 + 0 NA intron (ENSMUSG00000023033.14, intron 1 of 1) protein_coding-intron (ENSMUSG00000023033.14, intron 1 of 26) -66046 ENSMUSG00000115912.1 ENSMUSG00000115912 ENSMUST00000230694 Gm35569 lincRNA Interval_112639 chr4 43735260 43735836 + 0 NA intron (ENSMUSG00000028475.9, intron 2 of 5) protein_coding-intron (ENSMUSG00000028475.9, intron 2 of 5) 3289 ENSMUSG00000028475.9 ENSMUSG00000028475 ENSMUST00000142309 Spaar protein_coding Interval_164614 chr9 40054793 40055301 + 0 NA Intergenic Intergenic 4481 ENSMUSG00000101963.2 ENSMUSG00000101963 ENSMUST00000190330 1700001J11Rik transcribed_processed_pseudogene Interval_150923 chr7 116356457 116357179 + 0 NA intron (ENSMUSG00000030660.9, intron 7 of 17) protein_coding-intron (ENSMUSG00000030660.9, intron 21 of 32) -16189 ENSMUSG00000030660.9 ENSMUSG00000030660 ENSMUST00000205767 Pik3c2a protein_coding Interval_109738 chr3 146450046 146451224 + 0 NA exon (ENSMUSG00000028189.12, exon 1 of 1) protein_coding-exon (ENSMUSG00000028189.12, exon 1 of 1) 840 ENSMUSG00000028189.12 ENSMUSG00000028189 ENSMUST00000029840 Ctbs protein_coding Interval_38192 chr12 76287640 76287841 + 0 NA TTS (ENSMUSG00000112784.1) antisense-TTS (ENSMUSG00000112784.1) -10024 ENSMUSG00000112138.1 ENSMUSG00000112138 ENSMUST00000218456 Gm47526 processed_pseudogene Interval_24813 chr11 39540396 39540966 + 0 NA Intergenic Intergenic 187031 ENSMUSG00000083806.1 ENSMUSG00000083806 ENSMUST00000117479 Gm12131 processed_pseudogene Interval_68417 chr16 76296524 76296715 + 0 NA intron (ENSMUSG00000048490.14, intron 2 of 2) protein_coding-intron (ENSMUSG00000048490.14, intron 3 of 3) 77207 ENSMUSG00000048490.14 ENSMUSG00000048490 ENSMUST00000145649 Nrip1 protein_coding Interval_105357 chr3 85455592 85455989 + 0 NA intron (ENSMUSG00000110441.1, intron 2 of 4) protein_coding-intron (ENSMUSG00000102805.5, intron 3 of 9) 10338 ENSMUSG00000110441.1 ENSMUSG00000110441 ENSMUST00000211986 Gm45790 lincRNA Interval_158952 chr8 88198764 88200523 + 0 NA intron (ENSMUSG00000036779.12, intron 1 of 12) protein_coding-intron (ENSMUSG00000036779.12, intron 1 of 11) 25083 ENSMUSG00000062704.3 ENSMUSG00000062704 ENSMUST00000185395 9430002A10Rik lincRNA Interval_30037 chr11 88828419 88828958 + 0 NA Intergenic Intergenic 12852 ENSMUSG00000018428.15 ENSMUSG00000018428 ENSMUST00000153787 Akap1 protein_coding Interval_101312 chr2 180333703 180335321 + 0 NA exon (ENSMUSG00000015627.5, exon 1 of 6) protein_coding-exon (ENSMUSG00000015627.5, exon 1 of 6) 187 ENSMUSG00000015627.5 ENSMUSG00000015627 ENSMUST00000015771 Gata5 protein_coding Interval_65477 chr16 22602897 22603157 + 0 NA intron (ENSMUSG00000022861.17, intron 3 of 5) protein_coding-intron (ENSMUSG00000022861.17, intron 3 of 23) -2299 ENSMUSG00000098448.1 ENSMUSG00000098448 ENSMUST00000184329 Mir6362 miRNA Interval_158062 chr8 78489459 78490458 + 0 NA Intergenic Intergenic -3548 ENSMUSG00000110057.1 ENSMUSG00000110057 ENSMUST00000209570 Gm2225 processed_pseudogene Interval_130082 chr5 124148327 124149383 + 0 NA intron (ENSMUSG00000029406.15, intron 3 of 24) protein_coding-intron (ENSMUSG00000029406.15, intron 2 of 23) 31544 ENSMUSG00000029404.15 ENSMUSG00000029404 ENSMUST00000196401 Arl6ip4 protein_coding Interval_35572 chr12 24942408 24943165 + 0 NA intron (ENSMUSG00000020646.17, intron 3 of 9) protein_coding-intron (ENSMUSG00000020646.17, intron 3 of 9) -32207 ENSMUSG00000036333.11 ENSMUSG00000036333 ENSMUST00000222481 Kidins220 protein_coding Interval_86330 chr19 38801021 38801994 + 0 NA intron (ENSMUSG00000024999.7, intron 11 of 20) protein_coding-intron (ENSMUSG00000024999.7, intron 11 of 20) 17730 ENSMUSG00000024999.7 ENSMUSG00000024999 ENSMUST00000025963 Noc3l protein_coding Interval_51454 chr14 27673780 27675751 + 0 NA intron (ENSMUSG00000040640.11, intron 1 of 15) protein_coding-intron (ENSMUSG00000040640.11, intron 2 of 15) -39612 ENSMUSG00000114653.1 ENSMUSG00000114653 ENSMUST00000224481 Gm18398 processed_pseudogene Interval_23624 chr11 23927688 23928907 + 0 NA TTS (ENSMUSG00000084206.1) processed_pseudogene-TTS (ENSMUSG00000084206.1) 557 ENSMUSG00000084206.1 ENSMUSG00000084206 ENSMUST00000117533 Gm12062 processed_pseudogene Interval_36615 chr12 51493003 51495045 + 0 NA Intergenic Intergenic -23302 ENSMUSG00000111959.1 ENSMUSG00000111959 ENSMUST00000220340 Gm18503 processed_pseudogene Interval_138153 chr6 85521919 85522942 + 0 NA Intergenic Intergenic -7022 ENSMUSG00000107410.1 ENSMUSG00000107410 ENSMUST00000203710 Gm44023 processed_pseudogene Interval_173161 chrX 73684258 73685975 + 0 NA Intergenic Intergenic 9609 ENSMUSG00000019558.14 ENSMUSG00000019558 ENSMUST00000167828 Slc6a8 protein_coding Interval_39617 chr12 91583204 91583864 + 0 NA intron (ENSMUSG00000020962.14, intron 2 of 8) protein_coding-intron (ENSMUSG00000020962.14, intron 2 of 8) 6105 ENSMUSG00000020962.14 ENSMUSG00000020962 ENSMUST00000163693 Gtf2a1 protein_coding Interval_120352 chr4 148066702 148066966 + 0 NA Intergenic Intergenic 1658 ENSMUSG00000094320.1 ENSMUSG00000094320 ENSMUST00000117487 Chchd2-ps processed_pseudogene Interval_35946 chr12 32378438 32379943 + 0 NA exon (ENSMUSG00000090946.3, exon 1 of 1) protein_coding-exon (ENSMUSG00000090946.3, exon 1 of 1) 486 ENSMUSG00000090946.3 ENSMUSG00000090946 ENSMUST00000172332 Ccdc71l protein_coding Interval_97765 chr2 143931736 143933070 + 0 NA intron (ENSMUSG00000015932.8, intron 1 of 3) protein_coding-intron (ENSMUSG00000015932.8, intron 1 of 3) 17083 ENSMUSG00000015932.8 ENSMUSG00000015932 ENSMUST00000103172 Dstn protein_coding Interval_92574 chr2 60810675 60811088 + 0 NA intron (ENSMUSG00000026970.16, intron 2 of 14) protein_coding-intron (ENSMUSG00000026970.16, intron 2 of 13) 70557 ENSMUSG00000026970.16 ENSMUSG00000026970 ENSMUST00000128866 Rbms1 protein_coding Interval_130316 chr5 125633634 125633966 + 0 NA intron (ENSMUSG00000070498.3, intron 1 of 2) protein_coding-intron (ENSMUSG00000070498.3, intron 2 of 8) 102026 ENSMUSG00000070498.3 ENSMUSG00000070498 ENSMUST00000184422 Tmem132b protein_coding Interval_106539 chr3 97096073 97097029 + 0 NA Intergenic Intergenic -3766 ENSMUSG00000104766.1 ENSMUSG00000104766 ENSMUST00000197696 4930573H18Rik antisense Interval_117638 chr4 125196938 125197534 + 0 NA Intergenic Intergenic -31361 ENSMUSG00000087010.1 ENSMUSG00000087010 ENSMUST00000130055 1700041M05Rik lincRNA Interval_102592 chr3 28047697 28048926 + 0 NA TTS (ENSMUSG00000027695.16) protein_coding-TTS (ENSMUSG00000027695.16) -30879 ENSMUSG00000027695.16 ENSMUSG00000027695 ENSMUST00000126594 Pld1 protein_coding Interval_164916 chr9 43065147 43065723 + 0 NA intron (ENSMUSG00000059495.14, intron 1 of 4) protein_coding-intron (ENSMUSG00000059495.14, intron 1 of 41) -38775 ENSMUSG00000059495.14 ENSMUSG00000059495 ENSMUST00000214175 Arhgef12 protein_coding Interval_39057 chr12 84744019 84744267 + 0 NA Intergenic Intergenic 18397 ENSMUSG00000021242.9 ENSMUSG00000021242 ENSMUST00000221056 Npc2 protein_coding Interval_43939 chr13 38170369 38171287 + 0 NA intron (ENSMUSG00000054889.10, intron 4 of 23) protein_coding-intron (ENSMUSG00000054889.10, intron 4 of 23) -7539 ENSMUSG00000054889.10 ENSMUSG00000054889 ENSMUST00000145151 Dsp protein_coding Interval_60630 chr15 75819007 75819223 + 0 NA intron (ENSMUSG00000075600.3, intron 3 of 11) protein_coding-intron (ENSMUSG00000075600.3, intron 3 of 11) 9094 ENSMUSG00000075600.3 ENSMUSG00000075600 ENSMUST00000229000 Zc3h3 protein_coding Interval_172321 chrX 12990518 12991129 + 0 NA Intergenic Intergenic -45857 ENSMUSG00000083751.1 ENSMUSG00000083751 ENSMUST00000120045 Gm14534 processed_pseudogene Interval_173910 chrX 109120899 109121147 + 0 NA exon (ENSMUSG00000083210.1, exon 1 of 1) processed_pseudogene-exon (ENSMUSG00000083210.1, exon 1 of 1) 661 ENSMUSG00000083210.1 ENSMUSG00000083210 ENSMUST00000119007 Gm14869 processed_pseudogene Interval_12938 chr10 8351631 8352471 + 0 NA intron (ENSMUSG00000047712.8, intron 2 of 7) protein_coding-intron (ENSMUSG00000047712.8, intron 2 of 7) -49809 ENSMUSG00000047712.8 ENSMUSG00000047712 ENSMUST00000061601 Ust protein_coding Interval_91883 chr2 50992290 50992736 + 0 NA Intergenic Intergenic 82829 ENSMUSG00000083270.1 ENSMUSG00000083270 ENSMUST00000119159 Gm13498 processed_pseudogene Interval_23711 chr11 25057503 25057715 + 0 NA Intergenic Intergenic -131559 ENSMUSG00000087145.7 ENSMUSG00000087145 ENSMUST00000126063 Gm12665 lincRNA Interval_122075 chr5 16309420 16309984 + 0 NA intron (ENSMUSG00000040118.15, intron 12 of 37) protein_coding-intron (ENSMUSG00000040118.15, intron 12 of 38) -16449 ENSMUSG00000040118.15 ENSMUSG00000040118 ENSMUST00000199236 Cacna2d1 protein_coding Interval_39093 chr12 84995835 84997203 + 0 NA promoter-TSS (ENSMUSG00000021244.15) protein_coding-promoter-TSS (ENSMUSG00000021244.15) 16309 ENSMUSG00000021243.14 ENSMUSG00000021243 ENSMUST00000172241 Fcf1 protein_coding Interval_90450 chr2 30533471 30535469 + 0 NA promoter-TSS (ENSMUSG00000085275.1) lincRNA-promoter-TSS (ENSMUSG00000085275.1) -259 ENSMUSG00000085275.1 ENSMUSG00000085275 ENSMUST00000145413 Gm14487 lincRNA Interval_52401 chr14 45625148 45626483 + 0 NA intron (ENSMUSG00000037697.19, intron 3 of 5) protein_coding-intron (ENSMUSG00000037697.19, intron 2 of 11) 6548 ENSMUSG00000037697.19 ENSMUSG00000037697 ENSMUST00000226559 Ddhd1 protein_coding Interval_162328 chr8 127138538 127139669 + 0 NA intron (ENSMUSG00000025812.18, intron 1 of 17) protein_coding-intron (ENSMUSG00000025812.18, intron 1 of 23) -32301 ENSMUSG00000025812.18 ENSMUSG00000025812 ENSMUST00000159940 Pard3 protein_coding Interval_546 chr1 7144403 7144719 + 0 NA intron (ENSMUSG00000051285.17, intron 2 of 5) protein_coding-intron (ENSMUSG00000051285.17, intron 2 of 5) -3549 ENSMUSG00000103509.1 ENSMUSG00000103509 ENSMUST00000194854 Gm38372 TEC Interval_172844 chrX 51888471 51888692 + 0 NA Intergenic Intergenic 43896 ENSMUSG00000088792.1 ENSMUSG00000088792 ENSMUST00000158167 Gm22539 snoRNA Interval_86246 chr19 38054140 38055466 + 0 NA promoter-TSS (ENSMUSG00000069554.4) lincRNA-promoter-TSS (ENSMUSG00000069554.4) -275 ENSMUSG00000069554.4 ENSMUSG00000069554 ENSMUST00000092265 I830134H01Rik lincRNA Interval_44726 chr13 47854479 47856351 + 0 NA Intergenic Intergenic -55020 ENSMUSG00000114959.1 ENSMUSG00000114959 ENSMUST00000223677 G630093K05Rik lincRNA Interval_4609 chr1 75428938 75429221 + 0 NA exon (ENSMUSG00000026207.16, exon 37 of 41) protein_coding-exon (ENSMUSG00000026207.16, exon 37 of 41) -7863 ENSMUSG00000033021.16 ENSMUSG00000033021 ENSMUST00000124539 Gmppa protein_coding Interval_140328 chr6 116616003 116616445 + 0 NA Intergenic Intergenic 6300 ENSMUSG00000108138.1 ENSMUSG00000108138 ENSMUST00000203788 Gm18485 processed_pseudogene Interval_139945 chr6 112949094 112951410 + 0 NA TTS (ENSMUSG00000108103.1) lincRNA-TTS (ENSMUSG00000108103.1) 3215 ENSMUSG00000108103.1 ENSMUSG00000108103 ENSMUST00000204406 Gm44081 lincRNA Interval_107900 chr3 116681045 116682832 + 0 NA promoter-TSS (ENSMUSG00000105103.1) protein_coding-promoter-TSS (ENSMUSG00000105103.1) -678 ENSMUSG00000105103.1 ENSMUSG00000105103 ENSMUST00000140672 Gm43191 protein_coding Interval_162773 chr9 8912439 8912964 + 0 NA intron (ENSMUSG00000031870.16, intron 2 of 7) protein_coding-intron (ENSMUSG00000031870.16, intron 2 of 7) 12868 ENSMUSG00000031870.16 ENSMUSG00000031870 ENSMUST00000098986 Pgr protein_coding Interval_154504 chr8 18740442 18741808 + 0 NA exon (ENSMUSG00000031465.6, exon 1 of 9) protein_coding-exon (ENSMUSG00000031465.6, exon 1 of 9) -41578 ENSMUSG00000031465.6 ENSMUSG00000031465 ENSMUST00000170200 Angpt2 protein_coding Interval_127120 chr5 100410461 100410861 + 0 NA intron (ENSMUSG00000035325.16, intron 1 of 25) protein_coding-intron (ENSMUSG00000035325.16, intron 1 of 27) -11307 ENSMUSG00000098355.1 ENSMUSG00000098355 ENSMUST00000183460 Gm27553 misc_RNA Interval_169741 chr9 100839606 100840419 + 0 NA intron (ENSMUSG00000037286.15, intron 3 of 25) protein_coding-intron (ENSMUSG00000037286.15, intron 10 of 32) -37079 ENSMUSG00000103624.1 ENSMUSG00000103624 ENSMUST00000193413 Gm3081 TEC Interval_115606 chr4 101349554 101350598 + 0 NA intron (ENSMUSG00000086782.2, intron 1 of 1) lincRNA-intron (ENSMUSG00000086782.2, intron 1 of 1) -3049 ENSMUSG00000065451.1 ENSMUSG00000065451 ENSMUST00000083517 Mir101a miRNA Interval_131014 chr5 134557429 134558163 + 0 NA TTS (ENSMUSG00000085957.4) protein_coding-TTS (ENSMUSG00000085957.4) 2375 ENSMUSG00000085957.4 ENSMUSG00000085957 ENSMUST00000149604 Syna protein_coding Interval_122985 chr5 28170936 28171209 + 0 NA exon (ENSMUSG00000039095.8, exon 2 of 2) protein_coding-exon (ENSMUSG00000039095.8, exon 2 of 2) -2232 ENSMUSG00000106160.1 ENSMUSG00000106160 ENSMUST00000199117 Gm43610 TEC Interval_111818 chr4 31363444 31363819 + 0 NA Intergenic Intergenic -16841 ENSMUSG00000082254.1 ENSMUSG00000082254 ENSMUST00000118967 Gm11922 processed_pseudogene Interval_7506 chr1 131899397 131901420 + 0 NA Intergenic Intergenic -6757 ENSMUSG00000100026.1 ENSMUSG00000100026 ENSMUST00000187256 Gm29105 unprocessed_pseudogene Interval_54355 chr14 67890106 67890830 + 0 NA intron (ENSMUSG00000044447.5, intron 1 of 17) protein_coding-intron (ENSMUSG00000044447.5, intron 1 of 51) -30723 ENSMUSG00000098866.1 ENSMUSG00000098866 ENSMUST00000183732 Mir6539 miRNA Interval_2016 chr1 35905254 35906165 + 0 NA Intergenic Intergenic 25864 ENSMUSG00000102531.1 ENSMUSG00000102531 ENSMUST00000194261 1110002O04Rik lincRNA Interval_133644 chr6 7952794 7953058 + 0 NA Intergenic Intergenic 30457 ENSMUSG00000096403.2 ENSMUSG00000096403 ENSMUST00000178598 Rnps1-ps processed_pseudogene Interval_80860 chr18 49530089 49530554 + 0 NA Intergenic Intergenic 7032 ENSMUSG00000100297.1 ENSMUSG00000100297 ENSMUST00000190201 1700044K03Rik lincRNA Interval_25478 chr11 48837261 48838789 + 0 NA promoter-TSS (ENSMUSG00000040350.16) protein_coding-promoter-TSS (ENSMUSG00000040350.16) 541 ENSMUSG00000040350.16 ENSMUSG00000040350 ENSMUST00000131270 Trim7 protein_coding Interval_84917 chr19 18736330 18737455 + 0 NA Intergenic Intergenic -4116 ENSMUSG00000117878.1 ENSMUSG00000117878 ENSMUST00000237961 Gm50202 lincRNA Interval_78055 chr18 7579052 7579414 + 0 NA intron (ENSMUSG00000057440.8, intron 3 of 15) protein_coding-intron (ENSMUSG00000057440.8, intron 1 of 16) -2283 ENSMUSG00000094334.2 ENSMUSG00000094334 ENSMUST00000072582 Fabp5l2 processed_pseudogene Interval_52556 chr14 47471966 47473297 + 0 NA promoter-TSS (ENSMUSG00000037536.14) protein_coding-promoter-TSS (ENSMUSG00000037536.14) -486 ENSMUSG00000037536.14 ENSMUSG00000037536 ENSMUST00000228634 Fbxo34 protein_coding Interval_94050 chr2 82844492 82844684 + 0 NA Intergenic Intergenic -99046 ENSMUSG00000075249.12 ENSMUSG00000075249 ENSMUST00000132967 Fsip2 protein_coding Interval_15768 chr10 56368707 56369437 + 0 NA Intergenic Intergenic -8377 ENSMUSG00000050953.10 ENSMUSG00000050953 ENSMUST00000220069 Gja1 protein_coding Interval_103481 chr3 43558289 43558663 + 0 NA Intergenic Intergenic 11303 ENSMUSG00000104303.1 ENSMUSG00000104303 ENSMUST00000192632 Gm36976 TEC Interval_157989 chr8 77592408 77593776 + 0 NA Intergenic Intergenic 17606 ENSMUSG00000031617.16 ENSMUSG00000031617 ENSMUST00000141202 Tmem184c protein_coding Interval_131541 chr5 137951341 137951551 + 0 NA Intergenic Intergenic 11649 ENSMUSG00000056966.7 ENSMUSG00000056966 ENSMUST00000199083 Gjc3 protein_coding Interval_103352 chr3 40120321 40121774 + 0 NA Intergenic Intergenic 297470 ENSMUSG00000106948.1 ENSMUSG00000106948 ENSMUST00000202316 Gm42785 processed_pseudogene Interval_98236 chr2 150310887 150312495 + 0 NA intron (ENSMUSG00000095315.2, intron 1 of 3) protein_coding-intron (ENSMUSG00000063364.10, intron 3 of 3) 260 ENSMUSG00000095315.2 ENSMUSG00000095315 ENSMUST00000133235 Gm10130 protein_coding Interval_107839 chr3 116033495 116034122 + 0 NA Intergenic Intergenic 25980 ENSMUSG00000027963.14 ENSMUSG00000027963 ENSMUST00000106502 Extl2 protein_coding Interval_91275 chr2 37305298 37305715 + 0 NA Intergenic Intergenic -21009 ENSMUSG00000049018.8 ENSMUSG00000049018 ENSMUST00000053990 Olfr368 protein_coding Interval_107286 chr3 105444384 105445122 + 0 NA intron (ENSMUSG00000074346.6, intron 1 of 1) antisense-intron (ENSMUSG00000074346.6, intron 1 of 1) 6974 ENSMUSG00000074346.6 ENSMUSG00000074346 ENSMUST00000130683 Kcnd3os antisense Interval_158359 chr8 82802977 82803331 + 0 NA exon (ENSMUSG00000109643.1, exon 1 of 4) lincRNA-exon (ENSMUSG00000109643.1, exon 1 of 4) 207 ENSMUSG00000109643.1 ENSMUSG00000109643 ENSMUST00000209358 Gm31545 lincRNA Interval_33234 chr11 115393040 115394402 + 0 NA exon (ENSMUSG00000050910.5, exon 5 of 5) protein_coding-exon (ENSMUSG00000050910.5, exon 5 of 5) 11805 ENSMUSG00000050910.5 ENSMUSG00000050910 ENSMUST00000053288 Cdr2l protein_coding Interval_105832 chr3 89587854 89588849 + 0 NA intron (ENSMUSG00000000794.9, intron 2 of 7) protein_coding-intron (ENSMUSG00000000794.9, intron 2 of 7) -74167 ENSMUSG00000000794.9 ENSMUSG00000000794 ENSMUST00000124584 Kcnn3 protein_coding Interval_53342 chr14 56457593 56458362 + 0 NA intron (ENSMUSG00000000365.9, intron 1 of 13) protein_coding-intron (ENSMUSG00000000365.9, intron 11 of 36) 41211 ENSMUSG00000088761.1 ENSMUSG00000088761 ENSMUST00000158136 Gm24392 snRNA Interval_136918 chr6 64500805 64501019 + 0 NA intron (ENSMUSG00000071424.10, intron 13 of 15) protein_coding-intron (ENSMUSG00000071424.10, intron 13 of 15) 87264 ENSMUSG00000064775.1 ENSMUSG00000064775 ENSMUST00000082841 Gm25205 snRNA Interval_118483 chr4 131947420 131948078 + 0 NA exon (ENSMUSG00000028906.17, exon 10 of 10) protein_coding-exon (ENSMUSG00000028906.17, exon 10 of 10) -26221 ENSMUSG00000118394.1 ENSMUSG00000118394 ENSMUST00000238664 Gm50475 lincRNA Interval_27415 chr11 67482267 67482491 + 0 NA intron (ENSMUSG00000033066.16, intron 1 of 6) protein_coding-intron (ENSMUSG00000033066.16, intron 1 of 13) 95087 ENSMUSG00000087058.1 ENSMUSG00000087058 ENSMUST00000152963 Gm12301 antisense Interval_147217 chr7 64715679 64716885 + 0 NA intron (ENSMUSG00000030519.14, intron 4 of 11) protein_coding-intron (ENSMUSG00000030519.14, intron 6 of 14) -28301 ENSMUSG00000030519.14 ENSMUSG00000030519 ENSMUST00000206630 Apba2 protein_coding Interval_126481 chr5 88881683 88882061 + 0 NA Intergenic Intergenic -4614 ENSMUSG00000060961.16 ENSMUSG00000060961 ENSMUST00000134303 Slc4a4 protein_coding Interval_167856 chr9 73101894 73103987 + 0 NA TTS (ENSMUSG00000092622.8) protein_coding-TTS (ENSMUSG00000092622.8) 470 ENSMUSG00000092310.2 ENSMUSG00000092310 ENSMUST00000174203 Gm20509 protein_coding Interval_73449 chr17 37355063 37355613 + 0 NA Intergenic Intergenic -4244 ENSMUSG00000095858.4 ENSMUSG00000095858 ENSMUST00000215398 Olfr104-ps protein_coding Interval_88786 chr2 10727329 10727685 + 0 NA Intergenic Intergenic -166202 ENSMUSG00000103237.1 ENSMUSG00000103237 ENSMUST00000192439 Gm18547 processed_pseudogene Interval_150280 chr7 109230241 109231163 + 0 NA Intergenic Intergenic -6502 ENSMUSG00000109001.1 ENSMUSG00000109001 ENSMUST00000208274 Gm45024 lincRNA Interval_110338 chr3 157074398 157074673 + 0 NA intron (ENSMUSG00000040037.13, intron 4 of 6) protein_coding-intron (ENSMUSG00000040037.13, intron 4 of 6) 2791 ENSMUSG00000105803.1 ENSMUSG00000105803 ENSMUST00000196666 Gm43526 TEC Interval_99255 chr2 158396949 158397678 + 0 NA Intergenic Intergenic 5702 ENSMUSG00000083168.1 ENSMUSG00000083168 ENSMUST00000117627 Gm14201 processed_pseudogene Interval_68402 chr16 75876114 75876487 + 0 NA intron (ENSMUSG00000022876.18, intron 7 of 9) protein_coding-intron (ENSMUSG00000022876.18, intron 5 of 7) -103243 ENSMUSG00000081250.3 ENSMUSG00000081250 ENSMUST00000120406 Gm15554 processed_pseudogene Interval_87995 chr19 57647469 57649092 + 0 NA intron (ENSMUSG00000054843.9, intron 5 of 28) protein_coding-intron (ENSMUSG00000054843.9, intron 5 of 28) 37246 ENSMUSG00000054843.9 ENSMUSG00000054843 ENSMUST00000077282 Atrnl1 protein_coding Interval_168257 chr9 78220751 78221390 + 0 NA Intergenic Intergenic -6225 ENSMUSG00000111015.1 ENSMUSG00000111015 ENSMUST00000216513 Gm3126 processed_pseudogene Interval_163820 chr9 26861382 26861719 + 0 NA promoter-TSS (ENSMUSG00000031966.7) protein_coding-promoter-TSS (ENSMUSG00000031966.7) -37206 ENSMUSG00000031966.7 ENSMUSG00000031966 ENSMUST00000209592 Glb1l3 protein_coding Interval_23695 chr11 24685654 24685935 + 0 NA intron (ENSMUSG00000087085.1, intron 2 of 3) lincRNA-intron (ENSMUSG00000087085.1, intron 2 of 3) -6083 ENSMUSG00000080631.1 ENSMUSG00000080631 ENSMUST00000116981 Gm25507 miRNA Interval_85333 chr19 24885463 24886112 + 0 NA Intergenic Intergenic 10101 ENSMUSG00000058927.6 ENSMUSG00000058927 ENSMUST00000073080 Gm10053 protein_coding Interval_143738 chr7 15989022 15989350 + 0 NA promoter-TSS (ENSMUSG00000070808.4) protein_coding-promoter-TSS (ENSMUSG00000070808.4) 17303 ENSMUSG00000109984.1 ENSMUSG00000109984 ENSMUST00000210035 Gm38948 lincRNA Interval_42475 chr13 13977916 13978584 + 0 NA TTS (ENSMUSG00000039242.10) protein_coding-TTS (ENSMUSG00000039242.10) -6913 ENSMUSG00000096192.2 ENSMUSG00000096192 ENSMUST00000221021 Gm18856 transcribed_processed_pseudogene Interval_50440 chr14 13247291 13247956 + 0 NA intron (ENSMUSG00000051729.12, intron 2 of 3) processed_transcript-intron (ENSMUSG00000051729.12, intron 2 of 3) -37218 ENSMUSG00000056296.17 ENSMUSG00000056296 ENSMUST00000112656 Synpr protein_coding Interval_113611 chr4 56979633 56979841 + 0 NA intron (ENSMUSG00000045589.7, intron 1 of 4) protein_coding-intron (ENSMUSG00000045589.7, intron 1 of 4) 10399 ENSMUSG00000045589.7 ENSMUSG00000045589 ENSMUST00000128276 Frrs1l protein_coding Interval_51087 chr14 22316999 22317222 + 0 NA intron (ENSMUSG00000063458.13, intron 1 of 3) protein_coding-intron (ENSMUSG00000063458.13, intron 2 of 6) 225713 ENSMUSG00000114412.1 ENSMUSG00000114412 ENSMUST00000225587 4930405A10Rik antisense Interval_20338 chr10 116980505 116981609 + 0 NA Intergenic Intergenic -5257 ENSMUSG00000020169.4 ENSMUSG00000020169 ENSMUST00000020378 Best3 protein_coding Interval_171279 chr9 115990488 115991165 + 0 NA TTS (ENSMUSG00000087469.1) antisense-TTS (ENSMUSG00000087469.1) 10962 ENSMUSG00000087469.1 ENSMUSG00000087469 ENSMUST00000130584 Gm16142 antisense Interval_55522 chr14 90440580 90441024 + 0 NA Intergenic Intergenic 84415 ENSMUSG00000077619.1 ENSMUSG00000077619 ENSMUST00000104431 Gm25495 snoRNA Interval_103271 chr3 37704223 37705709 + 0 NA Intergenic Intergenic -3055 ENSMUSG00000104935.1 ENSMUSG00000104935 ENSMUST00000197710 Gm43414 TEC Interval_142622 chr6 144338646 144340587 + 0 NA intron (ENSMUSG00000041540.16, intron 4 of 6) protein_coding-intron (ENSMUSG00000041540.16, intron 4 of 13) -130048 ENSMUSG00000041540.16 ENSMUSG00000041540 ENSMUST00000150087 Sox5 protein_coding Interval_28067 chr11 72606798 72608633 + 0 NA intron (ENSMUSG00000020794.13, intron 1 of 4) protein_coding-intron (ENSMUSG00000020794.13, intron 1 of 5) 432 ENSMUSG00000020794.13 ENSMUSG00000020794 ENSMUST00000126046 Ube2g1 protein_coding Interval_60838 chr15 77058349 77059803 + 0 NA Intergenic Intergenic -8715 ENSMUSG00000095245.1 ENSMUSG00000095245 ENSMUST00000178183 Gm24753 snRNA Interval_112542 chr4 42999599 43000937 + 0 NA exon (ENSMUSG00000028452.7, exon 1 of 17) protein_coding-exon (ENSMUSG00000028452.7, exon 1 of 17) 3664 ENSMUSG00000028453.10 ENSMUSG00000028453 ENSMUST00000132273 Fancg protein_coding Interval_138315 chr6 87127168 87127514 + 0 NA Intergenic Intergenic 13511 ENSMUSG00000108195.1 ENSMUSG00000108195 ENSMUST00000204151 Gm44415 TEC Interval_103066 chr3 34828994 34829408 + 0 NA intron (ENSMUSG00000114832.2, intron 1 of 1) lincRNA-intron (ENSMUSG00000114832.2, intron 1 of 3) 2585 ENSMUSG00000114832.2 ENSMUSG00000114832 ENSMUST00000238552 Gm21388 lincRNA Interval_122185 chr5 19151215 19151431 + 0 NA Intergenic Intergenic 50282 ENSMUSG00000106498.1 ENSMUSG00000106498 ENSMUST00000197967 Gm43032 TEC Interval_111367 chr4 19766451 19767569 + 0 NA Intergenic Intergenic -46811 ENSMUSG00000086071.7 ENSMUSG00000086071 ENSMUST00000131133 Gm12354 lincRNA Interval_98008 chr2 146625267 146625531 + 0 NA Intergenic Intergenic 82468 ENSMUSG00000085796.1 ENSMUSG00000085796 ENSMUST00000147212 4933406D12Rik lincRNA Interval_147335 chr7 65918040 65919818 + 0 NA intron (ENSMUSG00000030513.14, intron 2 of 19) protein_coding-intron (ENSMUSG00000030513.14, intron 2 of 21) -34083 ENSMUSG00000030513.14 ENSMUSG00000030513 ENSMUST00000177272 Pcsk6 protein_coding Interval_123750 chr5 35155362 35155699 + 0 NA Intergenic Intergenic -53016 ENSMUSG00000029103.16 ENSMUSG00000029103 ENSMUST00000132754 Lrpap1 protein_coding Interval_39242 chr12 86149198 86149441 + 0 NA intron (ENSMUSG00000007867.9, intron 5 of 8) protein_coding-intron (ENSMUSG00000007867.9, intron 4 of 7) -20022 ENSMUSG00000097543.1 ENSMUSG00000097543 ENSMUST00000181667 Gm805 lincRNA Interval_45951 chr13 59608861 59609591 + 0 NA promoter-TSS (ENSMUSG00000021555.15) protein_coding-promoter-TSS (ENSMUSG00000021555.15) 5917 ENSMUSG00000114535.1 ENSMUSG00000114535 ENSMUST00000225230 Gm47246 TEC Interval_147364 chr7 66171107 66171314 + 0 NA exon (ENSMUSG00000032640.10, exon 3 of 3) protein_coding-exon (ENSMUSG00000032640.10, exon 3 of 3) 1911 ENSMUSG00000097634.2 ENSMUSG00000097634 ENSMUST00000181911 Gm26827 antisense Interval_8241 chr1 136678167 136678563 + 0 NA intron (ENSMUSG00000097113.7, intron 2 of 3) lincRNA-intron (ENSMUSG00000097113.7, intron 3 of 4) -5031 ENSMUSG00000097113.7 ENSMUSG00000097113 ENSMUST00000180962 Gm19705 lincRNA Interval_20094 chr10 114325460 114325681 + 0 NA Intergenic Intergenic -24904 ENSMUSG00000104335.1 ENSMUSG00000104335 ENSMUST00000192301 Gm38281 TEC Interval_45842 chr13 58496150 58496458 + 0 NA Intergenic Intergenic -49724 ENSMUSG00000114234.1 ENSMUSG00000114234 ENSMUST00000223882 Gm3131 processed_pseudogene Interval_38421 chr12 78928323 78928692 + 0 NA Intergenic Intergenic -21543 ENSMUSG00000021118.7 ENSMUSG00000021118 ENSMUST00000021544 Plek2 protein_coding Interval_126426 chr5 88436671 88437180 + 0 NA Intergenic Intergenic 9112 ENSMUSG00000105013.1 ENSMUSG00000105013 ENSMUST00000200446 Gm7721 processed_pseudogene Interval_154851 chr8 24383540 24384454 + 0 NA Intergenic Intergenic -24561 ENSMUSG00000109299.1 ENSMUSG00000109299 ENSMUST00000207438 Gm45164 lincRNA Interval_167019 chr9 64582845 64583368 + 0 NA intron (ENSMUSG00000036466.17, intron 1 of 1) protein_coding-intron (ENSMUSG00000036466.17, intron 5 of 24) 142614 ENSMUSG00000004771.12 ENSMUSG00000004771 ENSMUST00000165083 Rab11a protein_coding Interval_88290 chr2 3418495 3419265 + 0 NA promoter-TSS (ENSMUSG00000026650.15) protein_coding-promoter-TSS (ENSMUSG00000026650.15) 3714 ENSMUSG00000026650.15 ENSMUSG00000026650 ENSMUST00000144584 Meig1 protein_coding Interval_86331 chr19 38803772 38804107 + 0 NA intron (ENSMUSG00000024999.7, intron 11 of 20) protein_coding-intron (ENSMUSG00000024999.7, intron 11 of 20) 15298 ENSMUSG00000024999.7 ENSMUSG00000024999 ENSMUST00000025963 Noc3l protein_coding Interval_112155 chr4 34990741 34991744 + 0 NA intron (ENSMUSG00000073910.10, intron 2 of 3) protein_coding-intron (ENSMUSG00000073910.10, intron 2 of 3) 29022 ENSMUSG00000086792.1 ENSMUSG00000086792 ENSMUST00000144419 Gm12364 antisense Interval_20847 chr10 121498654 121498947 + 0 NA Intergenic Intergenic -6551 ENSMUSG00000111926.1 ENSMUSG00000111926 ENSMUST00000219800 Gm46204 lincRNA Interval_81890 chr18 65635503 65635685 + 0 NA exon (ENSMUSG00000117775.1, exon 1 of 1) sense_intronic-exon (ENSMUSG00000117775.1, exon 1 of 1) 801 ENSMUSG00000117775.1 ENSMUSG00000117775 ENSMUST00000237947 Gm50462 sense_intronic Interval_6519 chr1 114076425 114077053 + 0 NA Intergenic Intergenic -112605 ENSMUSG00000097648.1 ENSMUSG00000097648 ENSMUST00000180837 9330185C12Rik lincRNA Interval_158526 chr8 84248059 84250047 + 0 NA TTS (ENSMUSG00000004996.9) protein_coding-TTS (ENSMUSG00000004996.9) 666 ENSMUSG00000019362.8 ENSMUSG00000019362 ENSMUST00000019506 D8Ertd738e protein_coding Interval_95036 chr2 103374482 103375475 + 0 NA Intergenic Intergenic -2214 ENSMUSG00000087278.1 ENSMUSG00000087278 ENSMUST00000139065 A930006I01Rik lincRNA Interval_27657 chr11 69331023 69332498 + 0 NA exon (ENSMUSG00000018470.8, exon 13 of 14) protein_coding-exon (ENSMUSG00000018470.8, exon 13 of 14) 362 ENSMUSG00000086900.1 ENSMUSG00000086900 ENSMUST00000136196 Kcnab3os antisense Interval_128097 chr5 110852559 110853718 + 0 NA intron (ENSMUSG00000029521.7, intron 5 of 14) protein_coding-intron (ENSMUSG00000029521.7, intron 5 of 14) 11684 ENSMUSG00000029521.7 ENSMUSG00000029521 ENSMUST00000196650 Chek2 protein_coding Interval_72797 chr17 32235685 32236008 + 0 NA intron (ENSMUSG00000024002.18, intron 1 of 8) protein_coding-intron (ENSMUSG00000024002.18, intron 2 of 19) -6317 ENSMUSG00000116414.2 ENSMUSG00000116414 ENSMUST00000230961 Gm4432 processed_pseudogene Interval_115986 chr4 106816016 106816880 + 0 NA Intergenic Intergenic -16605 ENSMUSG00000034853.16 ENSMUSG00000034853 ENSMUST00000148688 Acot11 protein_coding Interval_110141 chr3 153673588 153673971 + 0 NA intron (ENSMUSG00000052544.9, intron 1 of 4) protein_coding-intron (ENSMUSG00000052544.9, intron 1 of 2) -35132 ENSMUSG00000089237.1 ENSMUSG00000089237 ENSMUST00000158612 Gm22206 snoRNA Interval_134303 chr6 24714571 24714861 + 0 NA Intergenic Intergenic -18529 ENSMUSG00000029679.7 ENSMUSG00000029679 ENSMUST00000031690 Hyal6 protein_coding Interval_153947 chr8 11437434 11438444 + 0 NA exon (ENSMUSG00000031503.13, exon 34 of 48) protein_coding-exon (ENSMUSG00000031503.13, exon 34 of 48) -3170 ENSMUSG00000031503.13 ENSMUSG00000031503 ENSMUST00000146219 Col4a2 protein_coding Interval_96856 chr2 129028135 129028332 + 0 NA intron (ENSMUSG00000079051.5, intron 5 of 6) protein_coding-intron (ENSMUSG00000079051.5, intron 5 of 6) 11281 ENSMUSG00000090248.1 ENSMUSG00000090248 ENSMUST00000135186 Gm14027 processed_transcript Interval_100855 chr2 172913302 172914776 + 0 NA intron (ENSMUSG00000008999.7, intron 2 of 6) protein_coding-intron (ENSMUSG00000008999.7, intron 2 of 6) 26053 ENSMUSG00000008999.7 ENSMUSG00000008999 ENSMUST00000137247 Bmp7 protein_coding Interval_105376 chr3 85707425 85707660 + 0 NA intron (ENSMUSG00000051000.17, intron 4 of 11) protein_coding-intron (ENSMUSG00000051000.17, intron 4 of 10) -33554 ENSMUSG00000051000.17 ENSMUSG00000051000 ENSMUST00000094148 Fam160a1 protein_coding Interval_155258 chr8 29035964 29036208 + 0 NA intron (ENSMUSG00000063626.6, intron 1 of 14) protein_coding-intron (ENSMUSG00000063626.6, intron 1 of 17) 51400 ENSMUSG00000109874.1 ENSMUSG00000109874 ENSMUST00000211467 Gm9911 TEC Interval_126862 chr5 96039307 96040257 + 0 NA Intergenic Intergenic 65542 ENSMUSG00000107092.1 ENSMUSG00000107092 ENSMUST00000200970 Gm7993 processed_pseudogene Interval_13905 chr10 24530237 24530559 + 0 NA Intergenic Intergenic -15887 ENSMUSG00000083196.1 ENSMUSG00000083196 ENSMUST00000120865 Gm15272 processed_pseudogene Interval_141211 chr6 125622385 125623315 + 0 NA intron (ENSMUSG00000001930.17, intron 5 of 14) protein_coding-intron (ENSMUSG00000001930.17, intron 18 of 51) 69887 ENSMUSG00000001930.17 ENSMUSG00000001930 ENSMUST00000146264 Vwf protein_coding Interval_60367 chr15 73193576 73194649 + 0 NA Intergenic Intergenic -16265 ENSMUSG00000036698.11 ENSMUSG00000036698 ENSMUST00000230464 Ago2 protein_coding Interval_89364 chr2 19901307 19902174 + 0 NA Intergenic Intergenic 13087 ENSMUSG00000105927.1 ENSMUSG00000105927 ENSMUST00000198109 Gm44457 miRNA Interval_98176 chr2 149349771 149350677 + 0 NA Intergenic Intergenic -6463 ENSMUSG00000081470.1 ENSMUSG00000081470 ENSMUST00000119636 Gm14131 processed_pseudogene Interval_110812 chr4 8688100 8688536 + 0 NA Intergenic Intergenic -14736 ENSMUSG00000082122.1 ENSMUSG00000082122 ENSMUST00000120923 Gm11809 processed_pseudogene Interval_106298 chr3 95230442 95231832 + 0 NA promoter-TSS (ENSMUSG00000053192.9) protein_coding-promoter-TSS (ENSMUSG00000053192.9) -739 ENSMUSG00000053192.9 ENSMUSG00000053192 ENSMUST00000199917 Mllt11 protein_coding Interval_1967 chr1 35196446 35196673 + 0 NA Intergenic Intergenic -17475 ENSMUSG00000077231.1 ENSMUSG00000077231 ENSMUST00000104043 Gm25096 snoRNA Interval_59630 chr15 56764813 56765574 + 0 NA promoter-TSS (ENSMUSG00000086541.8) processed_transcript-promoter-TSS (ENSMUSG00000086541.8) 18235 ENSMUSG00000115493.1 ENSMUSG00000115493 ENSMUST00000228866 Gm5673 processed_pseudogene Interval_31165 chr11 98580127 98582362 + 0 NA TTS (ENSMUSG00000038150.7) protein_coding-TTS (ENSMUSG00000038150.7) 6124 ENSMUSG00000038150.7 ENSMUSG00000038150 ENSMUST00000052919 Ormdl3 protein_coding Interval_9032 chr1 153196079 153196766 + 0 NA Intergenic Intergenic 42904 ENSMUSG00000026478.14 ENSMUSG00000026478 ENSMUST00000159251 Lamc1 protein_coding Interval_9320 chr1 156215864 156216696 + 0 NA Intergenic Intergenic 11013 ENSMUSG00000102932.1 ENSMUSG00000102932 ENSMUST00000193704 Gm38113 processed_pseudogene Interval_174295 chrX 144228258 144228483 + 0 NA Intergenic Intergenic 5211 ENSMUSG00000082121.1 ENSMUSG00000082121 ENSMUST00000121323 Gm8199 processed_pseudogene Interval_8708 chr1 149424498 149424735 + 0 NA intron (ENSMUSG00000101011.6, intron 3 of 4) lincRNA-intron (ENSMUSG00000101011.6, intron 3 of 4) 9351 ENSMUSG00000103724.1 ENSMUSG00000103724 ENSMUST00000192317 Gm37096 TEC Interval_92885 chr2 68125000 68125192 + 0 NA Intergenic Intergenic 43305 ENSMUSG00000081257.1 ENSMUSG00000081257 ENSMUST00000117875 Gm13607 processed_pseudogene Interval_68312 chr16 72995347 72995580 + 0 NA intron (ENSMUSG00000022883.11, intron 6 of 6) protein_coding-intron (ENSMUSG00000022883.11, intron 19 of 28) 19114 ENSMUSG00000022883.11 ENSMUSG00000022883 ENSMUST00000232432 Robo1 protein_coding Interval_59676 chr15 57857993 57859551 + 0 NA Intergenic Intergenic 31622 ENSMUSG00000022365.6 ENSMUSG00000022365 ENSMUST00000226911 Derl1 protein_coding Interval_164685 chr9 40581868 40582448 + 0 NA Intergenic Intergenic -21229 ENSMUSG00000111858.1 ENSMUSG00000111858 ENSMUST00000214616 Gm48277 lincRNA Interval_2605 chr1 41897969 41898190 + 0 NA intron (ENSMUSG00000100832.1, intron 4 of 5) lincRNA-intron (ENSMUSG00000100832.1, intron 4 of 5) -20273 ENSMUSG00000100832.1 ENSMUSG00000100832 ENSMUST00000187227 Gm29260 lincRNA Interval_142616 chr6 144298617 144299650 + 0 NA intron (ENSMUSG00000041540.16, intron 4 of 6) protein_coding-intron (ENSMUSG00000041540.16, intron 4 of 13) -89565 ENSMUSG00000041540.16 ENSMUSG00000041540 ENSMUST00000150087 Sox5 protein_coding Interval_141580 chr6 129581191 129581502 + 0 NA intron (ENSMUSG00000050241.8, intron 2 of 6) protein_coding-intron (ENSMUSG00000050241.8, intron 2 of 6) -2073 ENSMUSG00000050241.8 ENSMUSG00000050241 ENSMUST00000203865 Klre1 protein_coding Interval_7325 chr1 129001809 129002505 + 0 NA Intergenic Intergenic -116138 ENSMUSG00000064737.1 ENSMUSG00000064737 ENSMUST00000082803 Gm23056 snRNA Interval_78011 chr18 6675653 6676204 + 0 NA Intergenic Intergenic 15389 ENSMUSG00000117620.1 ENSMUSG00000117620 ENSMUST00000234799 Gm50077 processed_pseudogene Interval_74065 chr17 46343339 46343785 + 0 NA Intergenic Intergenic -15586 ENSMUSG00000032842.13 ENSMUSG00000032842 ENSMUST00000170168 Abcc10 protein_coding Interval_87196 chr19 46813290 46813679 + 0 NA intron (ENSMUSG00000064105.13, intron 1 of 1) protein_coding-intron (ENSMUSG00000064105.13, intron 1 of 6) -52176 ENSMUSG00000064105.13 ENSMUSG00000064105 ENSMUST00000235671 Cnnm2 protein_coding Interval_65678 chr16 25067186 25068091 + 0 NA exon (ENSMUSG00000096960.1, exon 3 of 3) lincRNA-exon (ENSMUSG00000096960.1, exon 3 of 3) 7999 ENSMUSG00000096960.1 ENSMUSG00000096960 ENSMUST00000181655 A230028O05Rik lincRNA Interval_122669 chr5 24564094 24564380 + 0 NA Intergenic Intergenic -8827 ENSMUSG00000038199.12 ENSMUSG00000038199 ENSMUST00000198709 Iqca1l protein_coding Interval_73900 chr17 45385472 45387541 + 0 NA Intergenic Intergenic 47035 ENSMUSG00000023932.9 ENSMUSG00000023932 ENSMUST00000232910 Cdc5l protein_coding Interval_58605 chr15 36505194 36506131 + 0 NA intron (ENSMUSG00000013611.14, intron 13 of 13) protein_coding-intron (ENSMUSG00000013611.14, intron 13 of 13) -2231 ENSMUSG00000115084.1 ENSMUSG00000115084 ENSMUST00000228391 Gm49246 TEC Interval_158964 chr8 88279579 88279784 + 0 NA intron (ENSMUSG00000031659.13, intron 1 of 27) protein_coding-intron (ENSMUSG00000031659.13, intron 1 of 27) -20698 ENSMUSG00000031659.13 ENSMUSG00000031659 ENSMUST00000210688 Adcy7 protein_coding Interval_54166 chr14 65867451 65867672 + 0 NA TTS (ENSMUSG00000022035.6) protein_coding-TTS (ENSMUSG00000022035.6) 30201 ENSMUSG00000022035.6 ENSMUSG00000022035 ENSMUST00000226027 Ccdc25 protein_coding Interval_21795 chr11 4403654 4404566 + 0 NA intron (ENSMUSG00000020419.11, intron 10 of 10) protein_coding-intron (ENSMUSG00000020419.11, intron 11 of 11) 23152 ENSMUSG00000020419.11 ENSMUSG00000020419 ENSMUST00000124249 Hormad2 protein_coding Interval_144826 chr7 28484071 28484630 + 0 NA intron (ENSMUSG00000109336.1, intron 1 of 12) protein_coding-intron (ENSMUSG00000109336.1, intron 1 of 12) -6498 ENSMUSG00000109201.1 ENSMUSG00000109201 ENSMUST00000208450 Gm6518 unprocessed_pseudogene Interval_86185 chr19 37614020 37614430 + 0 NA intron (ENSMUSG00000053799.8, intron 19 of 22) protein_coding-intron (ENSMUSG00000053799.8, intron 18 of 21) -71356 ENSMUSG00000062432.4 ENSMUSG00000062432 ENSMUST00000073391 Cyp26c1 protein_coding Interval_126787 chr5 92931375 92932480 + 0 NA intron (ENSMUSG00000029381.16, intron 1 of 2) protein_coding-intron (ENSMUSG00000029381.16, intron 2 of 9) -71904 ENSMUSG00000106930.1 ENSMUSG00000106930 ENSMUST00000200896 Gm6450 processed_pseudogene Interval_19467 chr10 99644526 99645360 + 0 NA intron (ENSMUSG00000111962.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000111962.1, intron 1 of 2) -5693 ENSMUSG00000112503.1 ENSMUSG00000112503 ENSMUST00000218988 Gm18409 transcribed_processed_pseudogene Interval_110044 chr3 152735475 152736134 + 0 NA intron (ENSMUSG00000039047.17, intron 3 of 7) protein_coding-intron (ENSMUSG00000039047.17, intron 3 of 11) 21681 ENSMUSG00000039047.17 ENSMUSG00000039047 ENSMUST00000160651 Pigk protein_coding Interval_120825 chr4 150866266 150866721 + 0 NA exon (ENSMUSG00000028967.10, exon 4 of 4) protein_coding-exon (ENSMUSG00000028967.10, exon 4 of 4) 11420 ENSMUSG00000028967.10 ENSMUSG00000028967 ENSMUST00000030811 Errfi1 protein_coding Interval_61303 chr15 80704021 80704929 + 0 NA Intergenic Intergenic -6865 ENSMUSG00000116220.1 ENSMUSG00000116220 ENSMUST00000230325 A430088P11Rik antisense Interval_1680 chr1 31010722 31011354 + 0 NA intron (ENSMUSG00000086727.8, intron 5 of 5) protein_coding-intron (ENSMUSG00000086727.8, intron 5 of 5) -24085 ENSMUSG00000086726.3 ENSMUSG00000086726 ENSMUST00000135273 Gm9458 processed_pseudogene Interval_83089 chr18 81191917 81192650 + 0 NA Intergenic Intergenic 43783 ENSMUSG00000097181.1 ENSMUSG00000097181 ENSMUST00000181204 4930594M17Rik lincRNA Interval_29537 chr11 84756249 84756519 + 0 NA Intergenic Intergenic 21445 ENSMUSG00000087407.1 ENSMUSG00000087407 ENSMUST00000155046 Gm11431 lincRNA Interval_64335 chr16 10576199 10576464 + 0 NA intron (ENSMUSG00000068663.14, intron 6 of 22) protein_coding-intron (ENSMUSG00000068663.14, intron 6 of 20) 30967 ENSMUSG00000068663.14 ENSMUSG00000068663 ENSMUST00000145866 Clec16a protein_coding Interval_101680 chr3 8891068 8891295 + 0 NA intron (ENSMUSG00000040269.5, intron 2 of 2) protein_coding-intron (ENSMUSG00000040269.5, intron 2 of 2) -8611 ENSMUSG00000081657.1 ENSMUSG00000081657 ENSMUST00000122299 Gm15466 processed_pseudogene Interval_150855 chr7 115818729 115819541 + 0 NA intron (ENSMUSG00000051910.13, intron 2 of 11) protein_coding-intron (ENSMUSG00000051910.13, intron 2 of 16) 27016 ENSMUSG00000051910.13 ENSMUSG00000051910 ENSMUST00000206912 Sox6 protein_coding Interval_23283 chr11 21152787 21153220 + 0 NA Intergenic Intergenic 44973 ENSMUSG00000088223.1 ENSMUSG00000088223 ENSMUST00000157598 Gm22600 misc_RNA Interval_144061 chr7 19249155 19249369 + 0 NA intron (ENSMUSG00000052214.9, intron 1 of 1) protein_coding-intron (ENSMUSG00000052214.9, intron 1 of 1) 7132 ENSMUSG00000064580.1 ENSMUSG00000064580 ENSMUST00000082646 Gm25134 snRNA Interval_115943 chr4 106453406 106454120 + 0 NA intron (ENSMUSG00000044254.6, intron 5 of 11) protein_coding-intron (ENSMUSG00000044254.6, intron 5 of 11) 10566 ENSMUSG00000044254.6 ENSMUSG00000044254 ENSMUST00000049507 Pcsk9 protein_coding Interval_146238 chr7 44898414 44899222 + 0 NA promoter-TSS (ENSMUSG00000109198.1) TEC-promoter-TSS (ENSMUSG00000109198.1) -719 ENSMUSG00000109198.1 ENSMUSG00000109198 ENSMUST00000208484 D7Bwg0826e TEC Interval_163575 chr9 22302111 22302626 + 0 NA intron (ENSMUSG00000066829.7, intron 2 of 3) protein_coding-intron (ENSMUSG00000066829.7, intron 2 of 7) 4600 ENSMUSG00000066829.7 ENSMUSG00000066829 ENSMUST00000217563 Zfp810 protein_coding Interval_95468 chr2 109867750 109868113 + 0 NA Intergenic Intergenic -22939 ENSMUSG00000027162.7 ENSMUSG00000027162 ENSMUST00000151163 Lin7c protein_coding Interval_85931 chr19 33408042 33408559 + 0 NA TTS (ENSMUSG00000087112.1) unprocessed_pseudogene-TTS (ENSMUSG00000087112.1) 12342 ENSMUSG00000087112.1 ENSMUSG00000087112 ENSMUST00000148435 Gm7237 unprocessed_pseudogene Interval_77528 chr17 90843331 90844378 + 0 NA intron (ENSMUSG00000024109.18, intron 1 of 12) protein_coding-intron (ENSMUSG00000024109.18, intron 4 of 20) -17315 ENSMUSG00000090160.1 ENSMUSG00000090160 ENSMUST00000162121 4930480K15Rik antisense Interval_15385 chr10 45301142 45301434 + 0 NA intron (ENSMUSG00000019848.14, intron 1 of 3) protein_coding-intron (ENSMUSG00000019848.14, intron 1 of 3) -3017 ENSMUSG00000111526.1 ENSMUSG00000111526 ENSMUST00000213575 Gm47433 processed_pseudogene Interval_48229 chr13 97317409 97318421 + 0 NA Intergenic Intergenic 34732 ENSMUSG00000097932.2 ENSMUSG00000097932 ENSMUST00000181148 C430039J16Rik lincRNA Interval_85566 chr19 28646321 28646686 + 0 NA intron (ENSMUSG00000052942.13, intron 2 of 10) protein_coding-intron (ENSMUSG00000052942.13, intron 2 of 9) -31725 ENSMUSG00000097735.7 ENSMUSG00000097735 ENSMUST00000181625 D930032P07Rik lincRNA Interval_137734 chr6 81933472 81933802 + 0 NA intron (ENSMUSG00000035125.10, intron 4 of 7) protein_coding-intron (ENSMUSG00000035125.10, intron 4 of 16) 2922 ENSMUSG00000035125.10 ENSMUSG00000035125 ENSMUST00000129678 Gcfc2 protein_coding Interval_121143 chr4 153480861 153483500 + 0 NA promoter-TSS (ENSMUSG00000039546.9) protein_coding-promoter-TSS (ENSMUSG00000039546.9) -1 ENSMUSG00000039546.9 ENSMUSG00000039546 ENSMUST00000149177 Ajap1 protein_coding Interval_22193 chr11 7055058 7056710 + 0 NA Intergenic Intergenic -103998 ENSMUSG00000020431.5 ENSMUSG00000020431 ENSMUST00000135398 Adcy1 protein_coding Interval_136321 chr6 53005301 53006281 + 0 NA intron (ENSMUSG00000063568.11, intron 1 of 4) protein_coding-intron (ENSMUSG00000063568.11, intron 1 of 4) 4741 ENSMUSG00000089209.1 ENSMUSG00000089209 ENSMUST00000158584 Gm26215 scaRNA Interval_166008 chr9 55409984 55411445 + 0 NA intron (ENSMUSG00000032313.11, intron 6 of 10) protein_coding-intron (ENSMUSG00000032313.11, intron 5 of 10) 77513 ENSMUSG00000032313.11 ENSMUSG00000032313 ENSMUST00000130465 Tmem266 protein_coding Interval_45783 chr13 58049081 58049693 + 0 NA intron (ENSMUSG00000014164.15, intron 6 of 14) protein_coding-intron (ENSMUSG00000014164.15, intron 8 of 16) -26187 ENSMUSG00000077962.1 ENSMUSG00000077962 ENSMUST00000104769 Mir874 miRNA Interval_71651 chr17 25139874 25140548 + 0 NA intron (ENSMUSG00000036636.10, intron 1 of 24) protein_coding-intron (ENSMUSG00000036636.10, intron 1 of 24) 6820 ENSMUSG00000036636.10 ENSMUSG00000036636 ENSMUST00000159426 Clcn7 protein_coding Interval_134347 chr6 25931031 25931685 + 0 NA promoter-TSS (ENSMUSG00000106799.1) lincRNA-promoter-TSS (ENSMUSG00000106799.1) -68 ENSMUSG00000106799.1 ENSMUSG00000106799 ENSMUST00000201080 Gm20756 lincRNA Interval_137935 chr6 83506426 83507353 + 0 NA promoter-TSS (ENSMUSG00000014554.13) protein_coding-promoter-TSS (ENSMUSG00000014554.13) -16469 ENSMUSG00000014554.13 ENSMUSG00000014554 ENSMUST00000147060 Dguok protein_coding Interval_68793 chr16 86750132 86750338 + 0 NA Intergenic Intergenic -8664 ENSMUSG00000116906.1 ENSMUSG00000116906 ENSMUST00000232053 Gm49572 processed_pseudogene Interval_41550 chr12 116221405 116221620 + 0 NA intron (ENSMUSG00000042050.8, intron 4 of 11) protein_coding-intron (ENSMUSG00000042050.8, intron 14 of 21) 21055 ENSMUSG00000096694.1 ENSMUSG00000096694 ENSMUST00000180307 Gm23190 miRNA Interval_61314 chr15 80790865 80791133 + 0 NA intron (ENSMUSG00000047888.10, intron 4 of 24) protein_coding-intron (ENSMUSG00000047888.10, intron 4 of 24) 78728 ENSMUSG00000116480.1 ENSMUSG00000116480 ENSMUST00000230620 Gm49512 sense_intronic Interval_119518 chr4 138082787 138083418 + 0 NA intron (ENSMUSG00000028760.16, intron 5 of 33) protein_coding-intron (ENSMUSG00000028760.16, intron 4 of 9) 55416 ENSMUSG00000084804.1 ENSMUSG00000084804 ENSMUST00000124620 1700095J12Rik antisense Interval_134492 chr6 29115862 29116574 + 0 NA Intergenic Intergenic -2612 ENSMUSG00000064436.1 ENSMUSG00000064436 ENSMUST00000082502 Gm25589 snRNA Interval_168463 chr9 81319819 81320101 + 0 NA Intergenic Intergenic -135437 ENSMUSG00000098429.1 ENSMUSG00000098429 ENSMUST00000184676 Gm27226 lincRNA Interval_27324 chr11 66304056 66305591 + 0 NA intron (ENSMUSG00000053930.13, intron 2 of 4) protein_coding-intron (ENSMUSG00000053930.13, intron 2 of 4) 136788 ENSMUSG00000084967.1 ENSMUSG00000084967 ENSMUST00000144922 Gm12296 processed_transcript Interval_25461 chr11 48750452 48751585 + 0 NA TTS (ENSMUSG00000082454.3) processed_pseudogene-TTS (ENSMUSG00000082454.3) 2696 ENSMUSG00000082454.3 ENSMUSG00000082454 ENSMUST00000120566 Gm12183 processed_pseudogene Interval_144347 chr7 24610245 24611664 + 0 NA promoter-TSS (ENSMUSG00000074277.4) protein_coding-promoter-TSS (ENSMUSG00000074277.4) 191 ENSMUSG00000074277.4 ENSMUSG00000074277 ENSMUST00000205330 Phldb3 protein_coding Interval_137603 chr6 75036762 75038131 + 0 NA Intergenic Intergenic 150722 ENSMUSG00000107467.1 ENSMUSG00000107467 ENSMUST00000204463 Gm8992 processed_pseudogene Interval_100104 chr2 167092179 167092386 + 0 NA Intergenic Intergenic -1277 ENSMUSG00000083436.1 ENSMUSG00000083436 ENSMUST00000121824 Gm11471 processed_pseudogene Interval_860 chr1 12753703 12754791 + 0 NA intron (ENSMUSG00000016918.15, intron 2 of 3) protein_coding-intron (ENSMUSG00000016918.15, intron 2 of 21) 34783 ENSMUSG00000016918.15 ENSMUSG00000016918 ENSMUST00000185780 Sulf1 protein_coding Interval_63682 chr15 102761712 102763021 + 0 NA Intergenic Intergenic 33005 ENSMUSG00000116263.1 ENSMUSG00000116263 ENSMUST00000229081 Gm49473 processed_pseudogene Interval_82348 chr18 71594115 71594420 + 0 NA intron (ENSMUSG00000060534.16, intron 7 of 28) protein_coding-intron (ENSMUSG00000060534.16, intron 7 of 28) -686616 ENSMUSG00000118271.1 ENSMUSG00000118271 ENSMUST00000236972 Gm50262 processed_pseudogene Interval_164709 chr9 40736630 40737222 + 0 NA intron (ENSMUSG00000032024.10, intron 1 of 1) protein_coding-intron (ENSMUSG00000032024.10, intron 1 of 6) -16940 ENSMUSG00000086014.1 ENSMUSG00000086014 ENSMUST00000128235 Gm16095 antisense Interval_142703 chr6 145062746 145063929 + 0 NA intron (ENSMUSG00000030268.17, intron 1 of 10) protein_coding-intron (ENSMUSG00000030268.17, intron 1 of 9) 6948 ENSMUSG00000086643.1 ENSMUSG00000086643 ENSMUST00000141440 Gm15687 antisense Interval_69889 chr16 97933922 97934556 + 0 NA intron (ENSMUSG00000045975.8, intron 1 of 6) protein_coding-intron (ENSMUSG00000045975.8, intron 1 of 6) -11633 ENSMUSG00000045975.8 ENSMUSG00000045975 ENSMUST00000231953 C2cd2 protein_coding Interval_104924 chr3 79038166 79040286 + 0 NA Intergenic Intergenic 59304 ENSMUSG00000077487.1 ENSMUSG00000077487 ENSMUST00000104299 Gm23440 snoRNA Interval_33703 chr11 117993350 117993618 + 0 NA intron (ENSMUSG00000017715.11, intron 1 of 9) protein_coding-intron (ENSMUSG00000017715.11, intron 1 of 9) -8786 ENSMUSG00000098958.1 ENSMUSG00000098958 ENSMUST00000184982 Mir6933 miRNA Interval_145145 chr7 30295293 30295593 + 0 NA intron (ENSMUSG00000013921.15, intron 2 of 3) protein_coding-intron (ENSMUSG00000013921.15, intron 2 of 13) 3714 ENSMUSG00000013921.15 ENSMUSG00000013921 ENSMUST00000132844 Clip3 protein_coding Interval_161322 chr8 119733538 119734357 + 0 NA intron (ENSMUSG00000034112.9, intron 7 of 26) protein_coding-intron (ENSMUSG00000034112.9, intron 7 of 26) 19493 ENSMUSG00000110445.1 ENSMUSG00000110445 ENSMUST00000212203 Gm45747 TEC Interval_147231 chr7 64866344 64866772 + 0 NA TTS (ENSMUSG00000070520.4) protein_coding-TTS (ENSMUSG00000070520.4) 6439 ENSMUSG00000070520.4 ENSMUSG00000070520 ENSMUST00000094331 Nsmce3 protein_coding Interval_70659 chr17 12869676 12870400 + 0 NA Intergenic Intergenic -4798 ENSMUSG00000092913.1 ENSMUSG00000092913 ENSMUST00000175172 Gm24085 miRNA Interval_171449 chr9 118422553 118422883 + 0 NA Intergenic Intergenic -7118 ENSMUSG00000111843.1 ENSMUSG00000111843 ENSMUST00000213675 4933432G23Rik lincRNA Interval_14115 chr10 27646838 27647543 + 0 NA intron (ENSMUSG00000112610.1, intron 4 of 4) lincRNA-intron (ENSMUSG00000112610.1, intron 4 of 4) -31862 ENSMUSG00000103931.1 ENSMUSG00000103931 ENSMUST00000192114 Gm36962 TEC Interval_47243 chr13 79242124 79242723 + 0 NA Intergenic Intergenic -43289 ENSMUSG00000101416.1 ENSMUSG00000101416 ENSMUST00000185308 Gm29318 lincRNA Interval_7307 chr1 128712703 128713051 + 0 NA Intergenic Intergenic -38049 ENSMUSG00000099403.1 ENSMUSG00000099403 ENSMUST00000185285 Gm29599 processed_pseudogene Interval_94727 chr2 93811874 93812299 + 0 NA intron (ENSMUSG00000027198.16, intron 3 of 11) protein_coding-intron (ENSMUSG00000027198.16, intron 2 of 13) 10463 ENSMUSG00000027198.16 ENSMUSG00000027198 ENSMUST00000125027 Ext2 protein_coding Interval_91813 chr2 49825688 49825855 + 0 NA intron (ENSMUSG00000026765.12, intron 1 of 9) protein_coding-intron (ENSMUSG00000026765.12, intron 1 of 9) -12823 ENSMUSG00000085357.1 ENSMUSG00000085357 ENSMUST00000125095 Gm13480 lincRNA Interval_69589 chr16 94458833 94459745 + 0 NA intron (ENSMUSG00000040785.19, intron 40 of 44) protein_coding-intron (ENSMUSG00000040785.19, intron 41 of 45) -29488 ENSMUSG00000116589.1 ENSMUSG00000116589 ENSMUST00000210205 Gm31323 antisense Interval_71736 chr17 25780869 25781107 + 0 NA TTS (ENSMUSG00000098329.1) miRNA-TTS (ENSMUSG00000098329.1) 180 ENSMUSG00000098329.1 ENSMUSG00000098329 ENSMUST00000183975 Mir6966 miRNA Interval_165318 chr9 46269868 46270524 + 0 NA TTS (ENSMUSG00000032079.12) protein_coding-TTS (ENSMUSG00000032079.12) 1118 ENSMUSG00000032079.12 ENSMUSG00000032079 ENSMUST00000034584 Apoa5 protein_coding Interval_146102 chr7 43919672 43920578 + 0 NA intron (ENSMUSG00000108444.1, intron 2 of 2) transcribed_unprocessed_pseudogene-intron (ENSMUSG00000108444.1, intron 2 of 2) 2068 ENSMUSG00000108444.1 ENSMUSG00000108444 ENSMUST00000206865 Klk2-ps transcribed_unprocessed_pseudogene Interval_90821 chr2 32817267 32818355 + 0 NA promoter-TSS (ENSMUSG00000026797.16) protein_coding-promoter-TSS (ENSMUSG00000026797.16) -14178 ENSMUSG00000064652.1 ENSMUSG00000064652 ENSMUST00000082718 Gm24165 snoRNA Interval_82854 chr18 77504099 77504321 + 0 NA intron (ENSMUSG00000025427.15, intron 1 of 4) protein_coding-intron (ENSMUSG00000025427.15, intron 1 of 7) -9230 ENSMUSG00000117855.1 ENSMUSG00000117855 ENSMUST00000236419 Gm50197 processed_pseudogene Interval_30984 chr11 97579092 97579945 + 0 NA Intergenic Intergenic -4292 ENSMUSG00000038453.17 ENSMUSG00000038453 ENSMUST00000145845 Srcin1 protein_coding Interval_6189 chr1 100635986 100636524 + 0 NA Intergenic Intergenic -7327 ENSMUSG00000099892.1 ENSMUSG00000099892 ENSMUST00000186725 Gm18185 processed_pseudogene Interval_91730 chr2 48898486 48898704 + 0 NA exon (ENSMUSG00000052155.5, exon 10 of 11) protein_coding-exon (ENSMUSG00000052155.5, exon 10 of 11) 8206 ENSMUSG00000052155.5 ENSMUSG00000052155 ENSMUST00000156681 Acvr2a protein_coding Interval_86878 chr19 44576079 44577651 + 0 NA TTS (ENSMUSG00000036450.4) protein_coding-TTS (ENSMUSG00000036450.4) 14015 ENSMUSG00000036450.4 ENSMUSG00000036450 ENSMUST00000040455 Hif1an protein_coding Interval_111857 chr4 32023658 32023968 + 0 NA TTS (ENSMUSG00000028284.13) protein_coding-TTS (ENSMUSG00000028284.13) -25072 ENSMUSG00000084440.1 ENSMUSG00000084440 ENSMUST00000122491 Gm26254 snRNA Interval_86062 chr19 36129148 36130416 + 0 NA Intergenic Intergenic -9872 ENSMUSG00000024803.9 ENSMUSG00000024803 ENSMUST00000235221 Ankrd1 protein_coding Interval_21089 chr10 126086644 126087347 + 0 NA Intergenic Intergenic 50168 ENSMUSG00000093161.1 ENSMUSG00000093161 ENSMUST00000175420 Gm22183 miRNA Interval_156751 chr8 57888667 57889084 + 0 NA intron (ENSMUSG00000096914.3, intron 7 of 12) protein_coding-intron (ENSMUSG00000096914.3, intron 2 of 7) -2868 ENSMUSG00000109753.1 ENSMUSG00000109753 ENSMUST00000210669 Gm45633 TEC Interval_131207 chr5 135814103 135814529 + 0 NA intron (ENSMUSG00000039860.19, intron 1 of 2) protein_coding-intron (ENSMUSG00000039860.19, intron 1 of 3) 23056 ENSMUSG00000094486.1 ENSMUSG00000094486 ENSMUST00000175494 Gm23268 miRNA Interval_108235 chr3 122728681 122730932 + 0 NA promoter-TSS (ENSMUSG00000053965.10) protein_coding-promoter-TSS (ENSMUSG00000053965.10) 236 ENSMUSG00000053965.10 ENSMUSG00000053965 ENSMUST00000199253 Pde5a protein_coding Interval_85416 chr19 25610133 25611597 + 0 NA TTS (ENSMUSG00000042372.5) protein_coding-TTS (ENSMUSG00000042372.5) 564 ENSMUSG00000042372.5 ENSMUSG00000042372 ENSMUST00000048935 Dmrt3 protein_coding Interval_100318 chr2 168357677 168358222 + 0 NA Intergenic Intergenic 22249 ENSMUSG00000064961.1 ENSMUSG00000064961 ENSMUST00000083027 Gm22704 snoRNA Interval_115909 chr4 106202586 106202881 + 0 NA Intergenic Intergenic -38483 ENSMUSG00000086249.1 ENSMUSG00000086249 ENSMUST00000140196 Gm12724 processed_transcript Interval_87948 chr19 57324652 57325100 + 0 NA intron (ENSMUSG00000097785.2, intron 1 of 2) processed_transcript-intron (ENSMUSG00000097785.2, intron 1 of 2) 1274 ENSMUSG00000117670.1 ENSMUSG00000117670 ENSMUST00000235809 Gm50270 lincRNA Interval_122001 chr5 13614122 13615699 + 0 NA Intergenic Intergenic 2905 ENSMUSG00000104905.1 ENSMUSG00000104905 ENSMUST00000197524 Gm43718 TEC Interval_124260 chr5 43080746 43080935 + 0 NA Intergenic Intergenic 21585 ENSMUSG00000105416.1 ENSMUSG00000105416 ENSMUST00000196390 Gm42553 TEC Interval_94661 chr2 93119824 93120032 + 0 NA Intergenic Intergenic -21684 ENSMUSG00000087559.1 ENSMUSG00000087559 ENSMUST00000150159 Gm13802 lincRNA Interval_9005 chr1 153047622 153048637 + 0 NA intron (ENSMUSG00000042751.14, intron 1 of 1) protein_coding-intron (ENSMUSG00000042751.14, intron 1 of 10) 41378 ENSMUSG00000099969.1 ENSMUSG00000099969 ENSMUST00000190117 Gm28960 antisense Interval_41174 chr12 111626032 111626592 + 0 NA intron (ENSMUSG00000007411.16, intron 6 of 6) protein_coding-intron (ENSMUSG00000007411.16, intron 7 of 15) 9442 ENSMUSG00000113910.1 ENSMUSG00000113910 ENSMUST00000220971 Gm48286 sense_overlapping Interval_32526 chr11 108151709 108152053 + 0 NA intron (ENSMUSG00000050965.14, intron 3 of 16) protein_coding-intron (ENSMUSG00000050965.14, intron 3 of 16) -29969 ENSMUSG00000084978.1 ENSMUSG00000084978 ENSMUST00000153899 Gm11655 antisense Interval_166771 chr9 62524579 62525236 + 0 NA intron (ENSMUSG00000041729.15, intron 1 of 2) protein_coding-intron (ENSMUSG00000041729.15, intron 1 of 11) 9878 ENSMUSG00000084540.1 ENSMUSG00000084540 ENSMUST00000122591 n-R5s84 rRNA Interval_42684 chr13 17943335 17944812 + 0 NA promoter-TSS (ENSMUSG00000113528.1) TEC-promoter-TSS (ENSMUSG00000113528.1) -124 ENSMUSG00000008859.8 ENSMUSG00000008859 ENSMUST00000223147 Rala protein_coding Interval_12762 chr10 5037914 5038169 + 0 NA intron (ENSMUSG00000096054.3, intron 140 of 145) protein_coding-intron (ENSMUSG00000096054.3, intron 11 of 16) -1585 ENSMUSG00000093189.1 ENSMUSG00000093189 ENSMUST00000175448 Gm25694 ribozyme Interval_70805 chr17 14824874 14825327 + 0 NA intron (ENSMUSG00000046991.12, intron 24 of 25) protein_coding-intron (ENSMUSG00000046991.12, intron 24 of 24) -33096 ENSMUSG00000089053.1 ENSMUSG00000089053 ENSMUST00000158428 Gm23352 snRNA Interval_165244 chr9 45744046 45744246 + 0 NA exon (ENSMUSG00000032087.11, exon 25 of 33) protein_coding-exon (ENSMUSG00000032087.11, exon 25 of 33) 50120 ENSMUSG00000043987.18 ENSMUSG00000043987 ENSMUST00000214868 Cep164 protein_coding Interval_10562 chr1 171889218 171889671 + 0 NA TTS (ENSMUSG00000038147.13) protein_coding-TTS (ENSMUSG00000038147.13) -6220 ENSMUSG00000073492.2 ENSMUSG00000073492 ENSMUST00000097466 Gm10521 protein_coding Interval_155596 chr8 34970157 34970966 + 0 NA intron (ENSMUSG00000109717.1, intron 2 of 2) lincRNA-intron (ENSMUSG00000109717.1, intron 2 of 2) 4128 ENSMUSG00000054247.6 ENSMUSG00000054247 ENSMUST00000210951 Gm9939 bidirectional_promoter_lncRNA Interval_145621 chr7 36158563 36158758 + 0 NA Intergenic Intergenic 40386 ENSMUSG00000066543.8 ENSMUSG00000066543 ENSMUST00000119541 Rpl17-ps9 processed_pseudogene Interval_69350 chr16 92393709 92395437 + 0 NA promoter-TSS (ENSMUSG00000022951.16) protein_coding-promoter-TSS (ENSMUSG00000022951.16) 5405 ENSMUSG00000022951.16 ENSMUSG00000022951 ENSMUST00000232457 Rcan1 protein_coding Interval_62404 chr15 91950681 91951044 + 0 NA Intergenic Intergenic -9878 ENSMUSG00000116212.1 ENSMUSG00000116212 ENSMUST00000229625 Gm18979 processed_pseudogene Interval_121567 chr5 3505139 3505668 + 0 NA intron (ENSMUSG00000040274.11, intron 5 of 7) protein_coding-intron (ENSMUSG00000040274.11, intron 4 of 6) -5331 ENSMUSG00000105534.1 ENSMUSG00000105534 ENSMUST00000196630 Gm42435 antisense Interval_71615 chr17 24873625 24875071 + 0 NA intron (ENSMUSG00000046070.9, intron 1 of 2) protein_coding-intron (ENSMUSG00000046070.9, intron 1 of 2) -3308 ENSMUSG00000046070.9 ENSMUSG00000046070 ENSMUST00000234754 Igfals protein_coding Interval_99176 chr2 157787475 157787944 + 0 NA promoter-TSS (ENSMUSG00000027649.15) protein_coding-promoter-TSS (ENSMUSG00000027649.15) -2155 ENSMUSG00000027649.15 ENSMUSG00000027649 ENSMUST00000156300 Ctnnbl1 protein_coding Interval_104530 chr3 67466538 67467087 + 0 NA intron (ENSMUSG00000027774.16, intron 2 of 6) protein_coding-intron (ENSMUSG00000027774.16, intron 13 of 17) -5178 ENSMUSG00000047557.2 ENSMUSG00000047557 ENSMUST00000160202 Lxn protein_coding Interval_158936 chr8 88099473 88099976 + 0 NA Intergenic Intergenic -10062 ENSMUSG00000118626.1 ENSMUSG00000118626 ENSMUST00000239289 AC127285.1 processed_pseudogene Interval_57256 chr15 8175283 8175508 + 0 NA intron (ENSMUSG00000039801.7, intron 5 of 52) protein_coding-intron (ENSMUSG00000039801.7, intron 5 of 52) 24312 ENSMUSG00000022142.8 ENSMUSG00000022142 ENSMUST00000230647 Nup155 protein_coding Interval_154824 chr8 23803175 23803470 + 0 NA intron (ENSMUSG00000037492.16, intron 3 of 3) protein_coding-intron (ENSMUSG00000037492.16, intron 3 of 6) -50557 ENSMUSG00000109158.1 ENSMUSG00000109158 ENSMUST00000209073 Gm45166 TEC Interval_42876 chr13 20935676 20937738 + 0 NA intron (ENSMUSG00000021322.8, intron 11 of 20) protein_coding-intron (ENSMUSG00000021322.8, intron 11 of 20) 91953 ENSMUSG00000088989.1 ENSMUSG00000088989 ENSMUST00000158364 Gm25605 snRNA Interval_21886 chr11 4981114 4981283 + 0 NA Intergenic Intergenic -33134 ENSMUSG00000020396.8 ENSMUSG00000020396 ENSMUST00000093369 Nefh protein_coding Interval_164881 chr9 42768873 42769425 + 0 NA intron (ENSMUSG00000032017.14, intron 3 of 20) protein_coding-intron (ENSMUSG00000032017.14, intron 1 of 18) 92980 ENSMUSG00000076355.2 ENSMUSG00000076355 ENSMUST00000102400 Gm27509 miRNA Interval_23308 chr11 21296121 21296593 + 0 NA TTS (ENSMUSG00000084048.1) processed_pseudogene-TTS (ENSMUSG00000084048.1) 797 ENSMUSG00000084048.1 ENSMUSG00000084048 ENSMUST00000120479 Gm12042 processed_pseudogene Interval_128127 chr5 111159600 111161132 + 0 NA exon (ENSMUSG00000106153.1, exon 1 of 1) TEC-exon (ENSMUSG00000106153.1, exon 1 of 1) 2055 ENSMUSG00000106153.1 ENSMUSG00000106153 ENSMUST00000198098 Gm43677 TEC Interval_173926 chrX 112600457 112601965 + 0 NA intron (ENSMUSG00000025529.14, intron 1 of 4) protein_coding-intron (ENSMUSG00000025529.14, intron 1 of 8) 685 ENSMUSG00000025529.14 ENSMUSG00000025529 ENSMUST00000122805 Zfp711 protein_coding Interval_3547 chr1 59487338 59488098 + 0 NA TTS (ENSMUSG00000041075.8) protein_coding-TTS (ENSMUSG00000041075.8) 4887 ENSMUSG00000097819.1 ENSMUSG00000097819 ENSMUST00000180778 Gm26813 lincRNA Interval_157192 chr8 67441755 67442675 + 0 NA Intergenic Intergenic -38706 ENSMUSG00000025588.4 ENSMUSG00000025588 ENSMUST00000026677 Nat1 protein_coding Interval_138453 chr6 88321697 88322097 + 0 NA intron (ENSMUSG00000033216.9, intron 4 of 7) protein_coding-intron (ENSMUSG00000033216.9, intron 4 of 6) 31709 ENSMUSG00000107472.1 ENSMUSG00000107472 ENSMUST00000203631 Gm44265 sense_intronic Interval_158242 chr8 80369176 80369817 + 0 NA Intergenic Intergenic -124285 ENSMUSG00000051839.7 ENSMUSG00000051839 ENSMUST00000063359 Gypa protein_coding Interval_49588 chr13 113257218 113257596 + 0 NA Intergenic Intergenic -35752 ENSMUSG00000021763.17 ENSMUSG00000021763 ENSMUST00000135096 BC067074 protein_coding Interval_48411 chr13 98858106 98859067 + 0 NA intron (ENSMUSG00000009470.17, intron 7 of 15) protein_coding-intron (ENSMUSG00000009470.17, intron 13 of 23) 11737 ENSMUSG00000009470.17 ENSMUSG00000009470 ENSMUST00000179271 Tnpo1 protein_coding Interval_66017 chr16 30977069 30977754 + 0 NA intron (ENSMUSG00000047434.14, intron 3 of 3) protein_coding-intron (ENSMUSG00000047434.14, intron 3 of 3) -3893 ENSMUSG00000087605.1 ENSMUSG00000087605 ENSMUST00000123905 Gm15742 sense_intronic Interval_18893 chr10 92721429 92722854 + 0 NA exon (ENSMUSG00000111740.1, exon 1 of 1) TEC-exon (ENSMUSG00000111740.1, exon 1 of 1) 263 ENSMUSG00000019988.7 ENSMUSG00000019988 ENSMUST00000216086 Nedd1 protein_coding Interval_101016 chr2 174270381 174270608 + 0 NA Intergenic Intergenic -2909 ENSMUSG00000065410.1 ENSMUSG00000065410 ENSMUST00000083476 Mir298 miRNA Interval_55199 chr14 79284650 79286143 + 0 NA Intergenic Intergenic 16249 ENSMUSG00000022018.7 ENSMUSG00000022018 ENSMUST00000022595 Rgcc protein_coding Interval_12445 chr1 193513869 193514788 + 0 NA Intergenic Intergenic -4154 ENSMUSG00000097850.2 ENSMUSG00000097850 ENSMUST00000180420 Mir205hg lincRNA Interval_108969 chr3 133683740 133683952 + 0 NA Intergenic Intergenic -20455 ENSMUSG00000105952.1 ENSMUSG00000105952 ENSMUST00000197904 Gm40153 lincRNA Interval_34933 chr12 13844597 13845337 + 0 NA Intergenic Intergenic -52630 ENSMUSG00000113855.1 ENSMUSG00000113855 ENSMUST00000220877 Gm49374 processed_pseudogene Interval_160320 chr8 108302350 108302868 + 0 NA intron (ENSMUSG00000038872.10, intron 3 of 4) protein_coding-intron (ENSMUSG00000038872.10, intron 2 of 15) 234612 ENSMUSG00000109868.1 ENSMUSG00000109868 ENSMUST00000211262 Gm39244 lincRNA Interval_53098 chr14 54439616 54439890 + 0 NA intron (ENSMUSG00000000957.11, intron 3 of 4) protein_coding-intron (ENSMUSG00000000957.11, intron 8 of 9) 1161 ENSMUSG00000000957.11 ENSMUSG00000000957 ENSMUST00000226710 Mmp14 protein_coding Interval_65705 chr16 25752205 25752760 + 0 NA intron (ENSMUSG00000022510.14, intron 1 of 13) protein_coding-intron (ENSMUSG00000022510.14, intron 1 of 12) 25786 ENSMUSG00000098103.1 ENSMUSG00000098103 ENSMUST00000182783 Gm27005 processed_pseudogene Interval_108489 chr3 127608102 127608374 + 0 NA intron (ENSMUSG00000051278.12, intron 18 of 24) protein_coding-intron (ENSMUSG00000051278.12, intron 19 of 25) -24897 ENSMUSG00000027967.8 ENSMUSG00000027967 ENSMUST00000029587 Neurog2 protein_coding Interval_26039 chr11 53632048 53633153 + 0 NA intron (ENSMUSG00000020383.1, intron 2 of 3) protein_coding-intron (ENSMUSG00000020383.1, intron 2 of 3) 2102 ENSMUSG00000020383.1 ENSMUSG00000020383 ENSMUST00000020650 Il13 protein_coding Interval_8385 chr1 138603371 138604388 + 0 NA intron (ENSMUSG00000026393.10, intron 1 of 9) protein_coding-intron (ENSMUSG00000026393.10, intron 1 of 7) 15825 ENSMUSG00000026393.10 ENSMUSG00000026393 ENSMUST00000191549 Nek7 protein_coding Interval_174321 chrX 144367597 144368099 + 0 NA intron (ENSMUSG00000041718.16, intron 3 of 4) protein_coding-intron (ENSMUSG00000041718.16, intron 11 of 13) -46593 ENSMUSG00000080922.1 ENSMUSG00000080922 ENSMUST00000121333 Gm2214 processed_pseudogene Interval_144392 chr7 24879243 24880299 + 0 NA Intergenic Intergenic -5042 ENSMUSG00000040952.16 ENSMUSG00000040952 ENSMUST00000146004 Rps19 protein_coding Interval_20456 chr10 117717560 117718529 + 0 NA Intergenic Intergenic -8022 ENSMUSG00000020184.15 ENSMUSG00000020184 ENSMUST00000151725 Mdm2 protein_coding Interval_71999 chr17 27510927 27514359 + 0 NA intron (ENSMUSG00000063239.17, intron 1 of 9) protein_coding-intron (ENSMUSG00000063239.17, intron 1 of 10) 1083 ENSMUSG00000063239.17 ENSMUSG00000063239 ENSMUST00000147865 Grm4 protein_coding Interval_134469 chr6 28962768 28963511 + 0 NA Intergenic Intergenic -18495 ENSMUSG00000092090.2 ENSMUSG00000092090 ENSMUST00000164104 Gm3294 lincRNA Interval_28237 chr11 74598112 74598414 + 0 NA intron (ENSMUSG00000038807.19, intron 1 of 25) protein_coding-intron (ENSMUSG00000038807.19, intron 1 of 25) 12652 ENSMUSG00000038807.19 ENSMUSG00000038807 ENSMUST00000145524 Rap1gap2 protein_coding Interval_57655 chr15 13432336 13432918 + 0 NA Intergenic Intergenic -13771 ENSMUSG00000115347.1 ENSMUSG00000115347 ENSMUST00000227992 Gm8238 processed_pseudogene Interval_147836 chr7 74006771 74007339 + 0 NA intron (ENSMUSG00000025789.9, intron 1 of 5) protein_coding-intron (ENSMUSG00000025789.9, intron 1 of 5) 6635 ENSMUSG00000025789.9 ENSMUSG00000025789 ENSMUST00000191970 St8sia2 protein_coding Interval_139449 chr6 100254044 100255709 + 0 NA intron (ENSMUSG00000072872.3, intron 1 of 1) protein_coding-intron (ENSMUSG00000072872.3, intron 2 of 4) 4351 ENSMUSG00000107461.1 ENSMUSG00000107461 ENSMUST00000204906 Gm44045 TEC Interval_65866 chr16 29904362 29904648 + 0 NA Intergenic Intergenic 42249 ENSMUSG00000097313.2 ENSMUSG00000097313 ENSMUST00000232356 Gm26569 processed_transcript Interval_34700 chr12 8764350 8764813 + 0 NA TTS (ENSMUSG00000096940.1) bidirectional_promoter_lncRNA-TTS (ENSMUSG00000096940.1) 6600 ENSMUSG00000096940.1 ENSMUSG00000096940 ENSMUST00000181803 Gm4755 bidirectional_promoter_lncRNA Interval_60681 chr15 76133127 76133656 + 0 NA Intergenic Intergenic -8052 ENSMUSG00000044361.16 ENSMUSG00000044361 ENSMUST00000226663 BC024139 protein_coding Interval_96437 chr2 122745372 122746123 + 0 NA intron (ENSMUSG00000005804.14, intron 3 of 4) protein_coding-intron (ENSMUSG00000005804.14, intron 3 of 4) 7228 ENSMUSG00000005804.14 ENSMUSG00000005804 ENSMUST00000129690 Bloc1s6 protein_coding Interval_82959 chr18 80012349 80012956 + 0 NA promoter-TSS (ENSMUSG00000117759.1) transcribed_processed_pseudogene-promoter-TSS (ENSMUSG00000117759.1) 262 ENSMUSG00000117759.1 ENSMUSG00000117759 ENSMUST00000235145 AA684185 transcribed_processed_pseudogene Interval_73183 chr17 35341959 35343508 + 0 NA exon (ENSMUSG00000091705.8, exon 2 of 7) protein_coding-exon (ENSMUSG00000091705.8, exon 2 of 7) -2266 ENSMUSG00000091705.8 ENSMUSG00000091705 ENSMUST00000173115 H2-Q2 protein_coding Interval_99284 chr2 158652652 158653741 + 0 NA Intergenic Intergenic 14613 ENSMUSG00000093120.1 ENSMUSG00000093120 ENSMUST00000175379 Mir3474 miRNA Interval_55550 chr14 91655918 91656629 + 0 NA Intergenic Intergenic -8434 ENSMUSG00000115368.1 ENSMUSG00000115368 ENSMUST00000227213 Gm48942 lincRNA Interval_79197 chr18 25590325 25591387 + 0 NA intron (ENSMUSG00000024268.16, intron 2 of 5) protein_coding-intron (ENSMUSG00000024268.16, intron 2 of 12) -6634 ENSMUSG00000114306.1 ENSMUSG00000114306 ENSMUST00000223994 Gm3227 antisense Interval_69143 chr16 90924628 90926367 + 0 NA promoter-TSS (ENSMUSG00000116836.1) TEC-promoter-TSS (ENSMUSG00000116836.1) -35 ENSMUSG00000116836.1 ENSMUSG00000116836 ENSMUST00000232334 Gm49727 TEC Interval_37225 chr12 61521287 61522018 + 0 NA exon (ENSMUSG00000113429.1, exon 1 of 3) lincRNA-exon (ENSMUSG00000113429.1, exon 1 of 3) 168 ENSMUSG00000113429.1 ENSMUSG00000113429 ENSMUST00000220757 Gm20063 lincRNA Interval_10626 chr1 172309808 172310571 + 0 NA intron (ENSMUSG00000038034.15, intron 3 of 8) protein_coding-intron (ENSMUSG00000038034.15, intron 3 of 8) -8571 ENSMUSG00000038034.15 ENSMUSG00000038034 ENSMUST00000150598 Igsf8 protein_coding Interval_113707 chr4 57772521 57773444 + 0 NA intron (ENSMUSG00000038729.24, intron 2 of 2) protein_coding-intron (ENSMUSG00000038729.24, intron 2 of 2) -9081 ENSMUSG00000073846.4 ENSMUSG00000073846 ENSMUST00000154462 Gm12526 processed_transcript Interval_831 chr1 12149077 12149343 + 0 NA Intergenic Intergenic 28250 ENSMUSG00000101610.1 ENSMUSG00000101610 ENSMUST00000187748 Gm7560 processed_pseudogene Interval_11178 chr1 179863067 179863748 + 0 NA Intergenic Intergenic 60031 ENSMUSG00000073486.2 ENSMUSG00000073486 ENSMUST00000097454 Gm10518 antisense Interval_46219 chr13 62633759 62634084 + 0 NA Intergenic Intergenic 9331 ENSMUSG00000114172.1 ENSMUSG00000114172 ENSMUST00000223394 Gm36298 processed_pseudogene Interval_34029 chr11 120100988 120101435 + 0 NA TTS (ENSMUSG00000078572.3) protein_coding-TTS (ENSMUSG00000078572.3) 2112 ENSMUSG00000078572.3 ENSMUSG00000078572 ENSMUST00000186913 Ndufaf8 protein_coding Interval_132010 chr5 142247099 142247437 + 0 NA Intergenic Intergenic -35838 ENSMUSG00000097947.1 ENSMUSG00000097947 ENSMUST00000182990 Gm26970 processed_pseudogene Interval_149121 chr7 94229322 94229535 + 0 NA intron (ENSMUSG00000108532.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000108532.1, intron 1 of 1) 32218 ENSMUSG00000096033.2 ENSMUSG00000096033 ENSMUST00000071770 Gm5899 processed_pseudogene Interval_167660 chr9 71645486 71646741 + 0 NA intron (ENSMUSG00000032232.14, intron 12 of 18) protein_coding-intron (ENSMUSG00000032232.14, intron 12 of 18) -15004 ENSMUSG00000032232.14 ENSMUSG00000032232 ENSMUST00000146567 Cgnl1 protein_coding Interval_144847 chr7 28578099 28579414 + 0 NA intron (ENSMUSG00000030602.13, intron 1 of 3) protein_coding-intron (ENSMUSG00000109336.1, intron 1 of 12) -17772 ENSMUSG00000098558.1 ENSMUSG00000098558 ENSMUST00000183983 Mir7049 miRNA Interval_102013 chr3 14987190 14987807 + 0 NA intron (ENSMUSG00000098008.1, intron 3 of 3) lincRNA-intron (ENSMUSG00000098008.1, intron 3 of 3) -12946 ENSMUSG00000098186.1 ENSMUSG00000098186 ENSMUST00000182302 Gm7132 processed_pseudogene Interval_15406 chr10 45615836 45616434 + 0 NA intron (ENSMUSG00000038822.15, intron 4 of 6) protein_coding-intron (ENSMUSG00000038822.15, intron 5 of 23) 34916 ENSMUSG00000111466.1 ENSMUSG00000111466 ENSMUST00000214524 Gm47504 processed_pseudogene Interval_67280 chr16 45344600 45345005 + 0 NA Intergenic Intergenic 64205 ENSMUSG00000022661.14 ENSMUSG00000022661 ENSMUST00000172091 Cd200 protein_coding Interval_76372 chr17 79667383 79667578 + 0 NA intron (ENSMUSG00000036368.8, intron 6 of 10) protein_coding-intron (ENSMUSG00000036368.8, intron 6 of 10) -4920 ENSMUSG00000036368.8 ENSMUSG00000036368 ENSMUST00000224097 Rmdn2 protein_coding Interval_53894 chr14 63170330 63172715 + 0 NA intron (ENSMUSG00000021273.11, intron 3 of 9) protein_coding-intron (ENSMUSG00000021273.11, intron 1 of 7) -6597 ENSMUSG00000021273.11 ENSMUSG00000021273 ENSMUST00000224267 Fdft1 protein_coding Interval_144313 chr7 24441703 24442277 + 0 NA intron (ENSMUSG00000062028.8, intron 1 of 2) protein_coding-intron (ENSMUSG00000062028.8, intron 1 of 1) -6364 ENSMUSG00000108360.1 ENSMUSG00000108360 ENSMUST00000206737 Gm36159 lincRNA Interval_106844 chr3 101271076 101271366 + 0 NA Intergenic Intergenic 9168 ENSMUSG00000027863.8 ENSMUSG00000027863 ENSMUST00000152321 Cd2 protein_coding Interval_101361 chr2 180779517 180780604 + 0 NA Intergenic Intergenic -3160 ENSMUSG00000045493.4 ENSMUSG00000045493 ENSMUST00000108878 Bhlhe23 protein_coding Interval_112156 chr4 34996338 34997096 + 0 NA intron (ENSMUSG00000073910.10, intron 2 of 3) protein_coding-intron (ENSMUSG00000073910.10, intron 2 of 3) 34497 ENSMUSG00000086792.1 ENSMUSG00000086792 ENSMUST00000144419 Gm12364 antisense Interval_86201 chr19 37739961 37740666 + 0 NA Intergenic Intergenic -16890 ENSMUSG00000117989.1 ENSMUSG00000117989 ENSMUST00000235833 Gm9066 processed_pseudogene Interval_21053 chr10 125598803 125599067 + 0 NA Intergenic Intergenic 86404 ENSMUSG00000112100.1 ENSMUSG00000112100 ENSMUST00000219250 Gm9102 processed_pseudogene Interval_162393 chr8 127884317 127886412 + 0 NA Intergenic Intergenic 287658 ENSMUSG00000088580.1 ENSMUSG00000088580 ENSMUST00000157955 Gm22968 rRNA Interval_114985 chr4 88081762 88081983 + 0 NA Intergenic Intergenic 38068 ENSMUSG00000081530.1 ENSMUSG00000081530 ENSMUST00000119144 Gm12646 processed_pseudogene Interval_101898 chr3 10631428 10632558 + 0 NA Intergenic Intergenic -14323 ENSMUSG00000104451.1 ENSMUSG00000104451 ENSMUST00000191685 Gm37831 TEC Interval_55942 chr14 103033400 103034324 + 0 NA promoter-TSS (ENSMUSG00000114980.1) lincRNA-promoter-TSS (ENSMUSG00000114980.1) -59 ENSMUSG00000114980.1 ENSMUSG00000114980 ENSMUST00000226662 4933432I03Rik lincRNA Interval_21889 chr11 5005398 5006354 + 0 NA intron (ENSMUSG00000009090.17, intron 1 of 2) protein_coding-intron (ENSMUSG00000009090.17, intron 1 of 20) -25101 ENSMUSG00000009090.17 ENSMUSG00000009090 ENSMUST00000133007 Ap1b1 protein_coding Interval_99126 chr2 157362316 157362560 + 0 NA Intergenic Intergenic -5156 ENSMUSG00000063019.5 ENSMUSG00000063019 ENSMUST00000081202 Manbal protein_coding Interval_169789 chr9 101407086 101408158 + 0 NA Intergenic Intergenic -14512 ENSMUSG00000096166.1 ENSMUSG00000096166 ENSMUST00000179807 Gm24638 snoRNA Interval_139304 chr6 98192373 98192753 + 0 NA intron (ENSMUSG00000107902.1, intron 2 of 4) antisense-intron (ENSMUSG00000107902.1, intron 2 of 4) 70767 ENSMUSG00000107902.1 ENSMUSG00000107902 ENSMUST00000205146 Gm32592 antisense Interval_163117 chr9 15378711 15379853 + 0 NA Intergenic Intergenic -2085 ENSMUSG00000111763.1 ENSMUSG00000111763 ENSMUST00000217087 Gm34973 lincRNA Interval_166272 chr9 57935847 57936119 + 0 NA Intergenic Intergenic -4129 ENSMUSG00000038264.8 ENSMUSG00000038264 ENSMUST00000043059 Sema7a protein_coding Interval_133594 chr6 7378845 7379255 + 0 NA TTS (ENSMUSG00000107517.1) TEC-TTS (ENSMUSG00000107517.1) 3083 ENSMUSG00000107517.1 ENSMUSG00000107517 ENSMUST00000203145 Gm44046 TEC Interval_44200 chr13 41925250 41926401 + 0 NA Intergenic Intergenic 24174 ENSMUSG00000089035.1 ENSMUSG00000089035 ENSMUST00000158410 Gm22157 snRNA Interval_69798 chr16 96530174 96530989 + 0 NA Intergenic Intergenic 36765 ENSMUSG00000090223.2 ENSMUSG00000090223 ENSMUST00000233216 Pcp4 protein_coding Interval_44520 chr13 45613809 45614166 + 0 NA intron (ENSMUSG00000046876.16, intron 5 of 6) protein_coding-intron (ENSMUSG00000046876.16, intron 6 of 7) 67834 ENSMUSG00000000253.13 ENSMUSG00000000253 ENSMUST00000222227 Gmpr protein_coding Interval_20410 chr10 117396405 117397526 + 0 NA intron (ENSMUSG00000112728.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000112728.1, intron 1 of 1) 6943 ENSMUSG00000112728.1 ENSMUSG00000112728 ENSMUST00000219525 Gm48903 lincRNA Interval_129523 chr5 120701255 120701829 + 0 NA intron (ENSMUSG00000029603.15, intron 2 of 9) protein_coding-intron (ENSMUSG00000029603.15, intron 2 of 9) -19463 ENSMUSG00000029603.15 ENSMUSG00000029603 ENSMUST00000124079 Dtx1 protein_coding Interval_79051 chr18 24178651 24178970 + 0 NA Intergenic Intergenic -53787 ENSMUSG00000000420.15 ENSMUSG00000000420 ENSMUST00000170191 Galnt1 protein_coding Interval_148835 chr7 89187808 89187993 + 0 NA intron (ENSMUSG00000039428.11, intron 4 of 5) protein_coding-intron (ENSMUSG00000039428.11, intron 6 of 14) 29197 ENSMUSG00000109576.1 ENSMUSG00000109576 ENSMUST00000208963 Gm44704 TEC Interval_106131 chr3 93506042 93506983 + 0 NA Intergenic Intergenic -6212 ENSMUSG00000104135.1 ENSMUSG00000104135 ENSMUST00000195295 Gm36953 processed_pseudogene Interval_25833 chr11 52032113 52032953 + 0 NA promoter-TSS (ENSMUSG00000020389.19) protein_coding-promoter-TSS (ENSMUSG00000020389.19) -997 ENSMUSG00000020389.19 ENSMUSG00000020389 ENSMUST00000207272 Cdkl3 protein_coding Interval_51357 chr14 26987395 26989253 + 0 NA Intergenic Intergenic -6092 ENSMUSG00000040726.10 ENSMUSG00000040726 ENSMUST00000035433 Hesx1 protein_coding Interval_89486 chr2 20961341 20962718 + 0 NA intron (ENSMUSG00000036591.16, intron 2 of 25) protein_coding-intron (ENSMUSG00000036591.16, intron 2 of 25) -7025 ENSMUSG00000075514.4 ENSMUSG00000075514 ENSMUST00000126967 Gm13375 antisense Interval_575 chr1 7671141 7672627 + 0 NA Intergenic Intergenic 7803 ENSMUSG00000103903.1 ENSMUSG00000103903 ENSMUST00000194305 Rps2-ps2 processed_pseudogene Interval_164459 chr9 37178951 37179725 + 0 NA Intergenic Intergenic -6344 ENSMUSG00000077483.1 ENSMUSG00000077483 ENSMUST00000104295 Gm25273 snoRNA Interval_22867 chr11 16904008 16904361 + 0 NA intron (ENSMUSG00000020122.16, intron 20 of 27) protein_coding-intron (ENSMUSG00000020122.16, intron 20 of 27) 46909 ENSMUSG00000087060.7 ENSMUSG00000087060 ENSMUST00000142777 Eldr processed_transcript Interval_13944 chr10 24885945 24886622 + 0 NA intron (ENSMUSG00000019984.16, intron 11 of 14) protein_coding-intron (ENSMUSG00000019984.16, intron 10 of 28) -7697 ENSMUSG00000096809.1 ENSMUSG00000096809 ENSMUST00000179967 Gm23410 snRNA Interval_29743 chr11 86518263 86518606 + 0 NA intron (ENSMUSG00000020516.15, intron 5 of 14) protein_coding-intron (ENSMUSG00000020516.15, intron 5 of 14) 26371 ENSMUSG00000020516.15 ENSMUSG00000020516 ENSMUST00000138810 Rps6kb1 protein_coding Interval_35075 chr12 17087304 17088516 + 0 NA Intergenic Intergenic 22497 ENSMUSG00000113447.1 ENSMUSG00000113447 ENSMUST00000221508 Gm48538 lincRNA Interval_147934 chr7 75747511 75748168 + 0 NA exon (ENSMUSG00000066406.16, exon 35 of 37) protein_coding-exon (ENSMUSG00000066406.16, exon 35 of 37) 9529 ENSMUSG00000076961.1 ENSMUSG00000076961 ENSMUST00000103773 Gm23251 miRNA Interval_69155 chr16 91019407 91021718 + 0 NA intron (ENSMUSG00000022974.12, intron 15 of 17) protein_coding-intron (ENSMUSG00000022974.12, intron 15 of 17) -1331 ENSMUSG00000022974.12 ENSMUSG00000022974 ENSMUST00000127002 Paxbp1 protein_coding Interval_79884 chr18 35730256 35730745 + 0 NA TTS (ENSMUSG00000073598.3) protein_coding-TTS (ENSMUSG00000073598.3) -8193 ENSMUSG00000073599.10 ENSMUSG00000073599 ENSMUST00000143684 Ecscr protein_coding Interval_144370 chr7 24727295 24728554 + 0 NA Intergenic Intergenic 2201 ENSMUSG00000108404.1 ENSMUSG00000108404 ENSMUST00000206419 Gm44972 processed_pseudogene Interval_24329 chr11 32434060 32434625 + 0 NA Intergenic Intergenic -21028 ENSMUSG00000044949.4 ENSMUSG00000044949 ENSMUST00000051053 Ubtd2 protein_coding Interval_89390 chr2 20352676 20353398 + 0 NA intron (ENSMUSG00000036617.17, intron 2 of 3) protein_coding-intron (ENSMUSG00000036617.17, intron 3 of 7) -28367 ENSMUSG00000091457.1 ENSMUSG00000091457 ENSMUST00000168048 Gm17171 antisense Interval_154444 chr8 17534477 17535799 + 0 NA exon (ENSMUSG00000060924.15, exon 1 of 70) protein_coding-exon (ENSMUSG00000060924.15, exon 1 of 70) 143 ENSMUSG00000060924.15 ENSMUSG00000060924 ENSMUST00000122983 Csmd1 protein_coding Interval_133271 chr5 150992612 150993004 + 0 NA exon (ENSMUSG00000058488.7, exon 5 of 5) protein_coding-exon (ENSMUSG00000058488.7, exon 5 of 5) 16493 ENSMUSG00000106963.1 ENSMUSG00000106963 ENSMUST00000201408 Gm8675 processed_pseudogene Interval_56330 chr14 117625566 117625787 + 0 NA exon (ENSMUSG00000058571.11, exon 4 of 4) protein_coding-exon (ENSMUSG00000058571.11, exon 4 of 4) 328171 ENSMUSG00000098648.1 ENSMUSG00000098648 ENSMUST00000183564 Mir6239 miRNA Interval_48733 chr13 102589793 102590065 + 0 NA intron (ENSMUSG00000114846.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000114846.1, intron 1 of 1) 356 ENSMUSG00000114846.1 ENSMUSG00000114846 ENSMUST00000225128 Gm29927 lincRNA Interval_133232 chr5 150734722 150735296 + 0 NA intron (ENSMUSG00000034021.15, intron 7 of 34) protein_coding-intron (ENSMUSG00000034021.15, intron 7 of 34) -17084 ENSMUSG00000107048.1 ENSMUSG00000107048 ENSMUST00000200678 Gm43807 sense_intronic Interval_103087 chr3 35152755 35152958 + 0 NA Intergenic Intergenic 123275 ENSMUSG00000105651.1 ENSMUSG00000105651 ENSMUST00000198307 1700017M07Rik lincRNA Interval_153996 chr8 11735731 11736358 + 0 NA intron (ENSMUSG00000031511.16, intron 2 of 4) protein_coding-intron (ENSMUSG00000031511.16, intron 1 of 17) -2577 ENSMUSG00000110394.1 ENSMUSG00000110394 ENSMUST00000209225 Gm18991 processed_pseudogene Interval_43898 chr13 37941797 37942158 + 0 NA intron (ENSMUSG00000039087.17, intron 11 of 12) protein_coding-intron (ENSMUSG00000039087.17, intron 10 of 11) -5039 ENSMUSG00000039087.17 ENSMUSG00000039087 ENSMUST00000162849 Rreb1 protein_coding Interval_58029 chr15 26680774 26682469 + 0 NA intron (ENSMUSG00000043556.10, intron 2 of 3) protein_coding-intron (ENSMUSG00000043556.10, intron 2 of 3) -6779 ENSMUSG00000115131.1 ENSMUSG00000115131 ENSMUST00000227490 Gm49268 TEC Interval_126533 chr5 89848406 89848632 + 0 NA intron (ENSMUSG00000043635.12, intron 3 of 3) protein_coding-intron (ENSMUSG00000043635.12, intron 3 of 21) 19648 ENSMUSG00000077175.1 ENSMUSG00000077175 ENSMUST00000103987 Gm25758 snoRNA Interval_106547 chr3 97158006 97160902 + 0 NA exon (ENSMUSG00000028093.15, exon 1 of 1) protein_coding-exon (ENSMUSG00000028093.15, exon 1 of 1) 358 ENSMUSG00000028093.15 ENSMUSG00000028093 ENSMUST00000198329 Acp6 protein_coding Interval_97424 chr2 136057682 136059995 + 0 NA promoter-TSS (ENSMUSG00000027270.14) protein_coding-promoter-TSS (ENSMUSG00000027270.14) 586 ENSMUSG00000027270.14 ENSMUSG00000027270 ENSMUST00000123436 Lamp5 protein_coding Interval_146612 chr7 48137071 48138686 + 0 NA Intergenic Intergenic -20437 ENSMUSG00000101352.1 ENSMUSG00000101352 ENSMUST00000189269 Gm28665 processed_pseudogene Interval_121662 chr5 4736447 4737006 + 0 NA Intergenic Intergenic 21309 ENSMUSG00000044674.6 ENSMUSG00000044674 ENSMUST00000054294 Fzd1 protein_coding Interval_80950 chr18 50884369 50884586 + 0 NA Intergenic Intergenic -118627 ENSMUSG00000118088.1 ENSMUSG00000118088 ENSMUST00000236182 Gm3815 processed_pseudogene Interval_101066 chr2 174857166 174857459 + 0 NA intron (ENSMUSG00000086177.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000086177.1, intron 1 of 2) 1023 ENSMUSG00000086177.1 ENSMUSG00000086177 ENSMUST00000131690 Gm14616 lincRNA Interval_3244 chr1 55118676 55118967 + 0 NA Intergenic Intergenic 2052 ENSMUSG00000100736.1 ENSMUSG00000100736 ENSMUST00000185999 Gm5147 processed_pseudogene Interval_101024 chr2 174310712 174311439 + 0 NA intron (ENSMUSG00000027523.20, intron 2 of 12) protein_coding-intron (ENSMUSG00000027523.20, intron 1 of 11) -15639 ENSMUSG00000086537.7 ENSMUSG00000086537 ENSMUST00000143738 Gnasas1 antisense Interval_16508 chr10 63265859 63266203 + 0 NA exon (ENSMUSG00000020064.9, exon 4 of 4) protein_coding-exon (ENSMUSG00000020064.9, exon 4 of 4) -4059 ENSMUSG00000112759.1 ENSMUSG00000112759 ENSMUST00000217955 Gm47615 TEC Interval_101035 chr2 174415388 174416379 + 0 NA promoter-TSS (ENSMUSG00000016253.12) protein_coding-promoter-TSS (ENSMUSG00000016253.12) -7509 ENSMUSG00000016253.12 ENSMUSG00000016253 ENSMUST00000137986 Nelfcd protein_coding Interval_131660 chr5 139122724 139123102 + 0 NA intron (ENSMUSG00000025855.13, intron 2 of 2) protein_coding-intron (ENSMUSG00000025855.13, intron 2 of 10) 27088 ENSMUSG00000025855.13 ENSMUSG00000025855 ENSMUST00000130180 Prkar1b protein_coding Interval_84429 chr19 10842890 10843488 + 0 NA exon (ENSMUSG00000024737.2, exon 1 of 8) protein_coding-exon (ENSMUSG00000024737.2, exon 1 of 8) -1427 ENSMUSG00000118027.1 ENSMUSG00000118027 ENSMUST00000235514 Gm10802 antisense Interval_86798 chr19 43939656 43940738 + 0 NA promoter-TSS (ENSMUSG00000025195.9) protein_coding-promoter-TSS (ENSMUSG00000025195.9) 7881 ENSMUSG00000084641.1 ENSMUSG00000084641 ENSMUST00000122692 n-R5s21 rRNA Interval_111133 chr4 12662793 12663981 + 0 NA exon (ENSMUSG00000104211.1, exon 1 of 1) TEC-exon (ENSMUSG00000104211.1, exon 1 of 1) 65999 ENSMUSG00000104211.1 ENSMUSG00000104211 ENSMUST00000194728 Gm37985 TEC Interval_173371 chrX 85510949 85511718 + 0 NA Intergenic Intergenic -62706 ENSMUSG00000035476.9 ENSMUSG00000035476 ENSMUST00000146063 Tab3 protein_coding Interval_24443 chr11 33289340 33289556 + 0 NA TTS (ENSMUSG00000040594.19) protein_coding-TTS (ENSMUSG00000040594.19) -12711 ENSMUSG00000098456.1 ENSMUSG00000098456 ENSMUST00000183831 Gm12117 protein_coding Interval_104049 chr3 57696592 57697106 + 0 NA exon (ENSMUSG00000106635.1, exon 1 of 1) TEC-exon (ENSMUSG00000106635.1, exon 1 of 1) 627 ENSMUSG00000106635.1 ENSMUSG00000106635 ENSMUST00000199989 Gm43098 TEC Interval_52279 chr14 43679575 43680283 + 0 NA Intergenic Intergenic -2730 ENSMUSG00000093968.1 ENSMUSG00000093968 ENSMUST00000095981 Gm8165 protein_coding Interval_104765 chr3 71824251 71824448 + 0 NA Intergenic Intergenic -34836 ENSMUSG00000098189.1 ENSMUSG00000098189 ENSMUST00000183150 Gm8604 processed_pseudogene Interval_111836 chr4 31685470 31685974 + 0 NA Intergenic Intergenic -299945 ENSMUSG00000028284.13 ENSMUSG00000028284 ENSMUST00000131310 Map3k7 protein_coding Interval_82924 chr18 79297673 79298036 + 0 NA Intergenic Intergenic 7308 ENSMUSG00000117828.1 ENSMUSG00000117828 ENSMUST00000236697 Gm2116 processed_pseudogene Interval_102433 chr3 25674481 25675318 + 0 NA intron (ENSMUSG00000063887.13, intron 5 of 7) protein_coding-intron (ENSMUSG00000063887.13, intron 3 of 5) 25404 ENSMUSG00000102397.1 ENSMUSG00000102397 ENSMUST00000193993 Gm37573 sense_intronic Interval_14801 chr10 40007035 40007388 + 0 NA intron (ENSMUSG00000038522.7, intron 2 of 2) protein_coding-intron (ENSMUSG00000038522.7, intron 2 of 3) -2344 ENSMUSG00000111608.1 ENSMUSG00000111608 ENSMUST00000214611 Gm48839 processed_pseudogene Interval_135611 chr6 41565213 41566246 + 0 NA Intergenic Intergenic -7277 ENSMUSG00000076499.3 ENSMUSG00000076499 ENSMUST00000193003 Trbv31 TR_V_gene Interval_133021 chr5 149335347 149336304 + 0 NA Intergenic Intergenic -32651 ENSMUSG00000107314.1 ENSMUSG00000107314 ENSMUST00000201641 Gm20488 processed_transcript Interval_145762 chr7 38125552 38126682 + 0 NA Intergenic Intergenic -26748 ENSMUSG00000002068.16 ENSMUSG00000002068 ENSMUST00000124979 Ccne1 protein_coding Interval_138222 chr6 86420582 86421033 + 0 NA TTS (ENSMUSG00000071337.11) protein_coding-TTS (ENSMUSG00000071337.11) -3022 ENSMUSG00000071337.11 ENSMUSG00000071337 ENSMUST00000123267 Tia1 protein_coding Interval_65854 chr16 29800229 29800938 + 0 NA Intergenic Intergenic -10475 ENSMUSG00000097307.1 ENSMUSG00000097307 ENSMUST00000181815 Gm26834 lincRNA Interval_157163 chr8 66696870 66697711 + 0 NA promoter-TSS (ENSMUSG00000036437.6) protein_coding-promoter-TSS (ENSMUSG00000036437.6) 98 ENSMUSG00000036437.6 ENSMUSG00000036437 ENSMUST00000039303 Npy1r protein_coding Interval_63649 chr15 102540198 102541338 + 0 NA exon (ENSMUSG00000099083.7, exon 10 of 11) protein_coding-exon (ENSMUSG00000099083.7, exon 10 of 11) -15826 ENSMUSG00000023052.8 ENSMUSG00000023052 ENSMUST00000184659 Npff protein_coding Interval_86148 chr19 37074621 37075114 + 0 NA intron (ENSMUSG00000039652.16, intron 7 of 10) protein_coding-intron (ENSMUSG00000039652.16, intron 7 of 10) 74295 ENSMUSG00000080544.1 ENSMUSG00000080544 ENSMUST00000116894 Gm22714 ribozyme Interval_30147 chr11 89720816 89721402 + 0 NA intron (ENSMUSG00000047773.15, intron 3 of 21) protein_coding-intron (ENSMUSG00000047773.15, intron 1 of 1) 120157 ENSMUSG00000047773.15 ENSMUSG00000047773 ENSMUST00000207171 Ankfn1 protein_coding Interval_2182 chr1 36898138 36899103 + 0 NA intron (ENSMUSG00000026116.11, intron 1 of 5) protein_coding-intron (ENSMUSG00000026116.11, intron 1 of 40) 17919 ENSMUSG00000102930.1 ENSMUSG00000102930 ENSMUST00000194317 Gm38115 sense_intronic Interval_22717 chr11 13842410 13842754 + 0 NA Intergenic Intergenic -319497 ENSMUSG00000081631.1 ENSMUSG00000081631 ENSMUST00000121451 Gm12005 processed_pseudogene Interval_25236 chr11 45752028 45752862 + 0 NA Intergenic Intergenic -55642 ENSMUSG00000086686.1 ENSMUSG00000086686 ENSMUST00000137002 F630206G17Rik processed_transcript Interval_104556 chr3 68045938 68046943 + 0 NA intron (ENSMUSG00000102422.1, intron 2 of 10) protein_coding-intron (ENSMUSG00000051777.6, intron 2 of 3) 154208 ENSMUSG00000102422.1 ENSMUSG00000102422 ENSMUST00000182006 Iqschfp protein_coding Interval_12336 chr1 192181571 192182501 + 0 NA Intergenic Intergenic 44691 ENSMUSG00000097316.2 ENSMUSG00000097316 ENSMUST00000195083 Gm10516 antisense Interval_60549 chr15 74872738 74873868 + 0 NA Intergenic Intergenic -16985 ENSMUSG00000022589.8 ENSMUSG00000022589 ENSMUST00000167634 Cyp11b2 protein_coding Interval_70252 chr17 7246806 7247832 + 0 NA intron (ENSMUSG00000023809.10, intron 3 of 7) protein_coding-intron (ENSMUSG00000023809.10, intron 4 of 20) 68527 ENSMUSG00000116935.1 ENSMUSG00000116935 ENSMUST00000231254 Gpr31a processed_pseudogene Interval_64409 chr16 11198367 11198890 + 0 NA TTS (ENSMUSG00000005846.12) protein_coding-TTS (ENSMUSG00000005846.12) 4607 ENSMUSG00000005846.12 ENSMUSG00000005846 ENSMUST00000230232 Rsl1d1 protein_coding Interval_132048 chr5 142483976 142484668 + 0 NA TTS (ENSMUSG00000029576.17) protein_coding-TTS (ENSMUSG00000029576.17) 3247 ENSMUSG00000029576.17 ENSMUSG00000029576 ENSMUST00000129212 Radil protein_coding Interval_129620 chr5 121384970 121386092 + 0 NA promoter-TSS (ENSMUSG00000042726.14) protein_coding-promoter-TSS (ENSMUSG00000042726.14) 9 ENSMUSG00000106209.1 ENSMUSG00000106209 ENSMUST00000199249 Gm42918 antisense Interval_128630 chr5 114400901 114403089 + 0 NA promoter-TSS (ENSMUSG00000029577.13) protein_coding-promoter-TSS (ENSMUSG00000029577.13) -2473 ENSMUSG00000098731.1 ENSMUSG00000098731 ENSMUST00000183408 Mir7027 miRNA Interval_116893 chr4 118044715 118045007 + 0 NA intron (ENSMUSG00000028538.12, intron 2 of 10) protein_coding-intron (ENSMUSG00000028538.12, intron 3 of 11) -12979 ENSMUSG00000028538.12 ENSMUSG00000028538 ENSMUST00000126336 St3gal3 protein_coding Interval_103793 chr3 53006935 53007940 + 0 NA intron (ENSMUSG00000027742.13, intron 7 of 18) protein_coding-intron (ENSMUSG00000027742.13, intron 7 of 18) 9781 ENSMUSG00000027742.13 ENSMUSG00000027742 ENSMUST00000193043 Cog6 protein_coding Interval_83037 chr18 80649183 80649542 + 0 NA exon (ENSMUSG00000033016.16, exon 8 of 8) protein_coding-exon (ENSMUSG00000033016.16, exon 8 of 8) -40387 ENSMUSG00000033016.16 ENSMUSG00000033016 ENSMUST00000236711 Nfatc1 protein_coding Interval_49639 chr13 113723658 113726090 + 0 NA Intergenic Intergenic 37254 ENSMUSG00000114962.1 ENSMUSG00000114962 ENSMUST00000225360 Gm6343 processed_pseudogene Interval_122350 chr5 21629470 21630777 + 0 NA intron (ENSMUSG00000048520.16, intron 3 of 18) protein_coding-intron (ENSMUSG00000048520.16, intron 3 of 19) 15511 ENSMUSG00000048520.16 ENSMUSG00000048520 ENSMUST00000200168 Fbxl13 protein_coding Interval_65171 chr16 20333361 20333723 + 0 NA intron (ENSMUSG00000022822.16, intron 2 of 2) protein_coding-intron (ENSMUSG00000022822.16, intron 29 of 29) -16792 ENSMUSG00000022818.13 ENSMUSG00000022818 ENSMUST00000182669 Cyp2ab1 protein_coding Interval_2077 chr1 36273467 36273865 + 0 NA promoter-TSS (ENSMUSG00000047180.8) protein_coding-promoter-TSS (ENSMUSG00000047180.8) 1013 ENSMUSG00000047180.8 ENSMUSG00000047180 ENSMUST00000188666 Neurl3 protein_coding Interval_170112 chr9 104804466 104805497 + 0 NA intron (ENSMUSG00000032564.16, intron 2 of 8) protein_coding-intron (ENSMUSG00000032564.16, intron 2 of 15) -67698 ENSMUSG00000032564.16 ENSMUSG00000032564 ENSMUST00000213452 Cpne4 protein_coding Interval_129786 chr5 122334443 122334673 + 0 NA intron (ENSMUSG00000038569.13, intron 6 of 12) protein_coding-intron (ENSMUSG00000038569.13, intron 6 of 10) 19662 ENSMUSG00000038569.13 ENSMUSG00000038569 ENSMUST00000200653 Rad9b protein_coding Interval_43073 chr13 23598124 23598433 + 0 NA intron (ENSMUSG00000047246.7, intron 1 of 1) protein_coding-intron (ENSMUSG00000047246.7, intron 1 of 1) 16680 ENSMUSG00000061482.7 ENSMUSG00000061482 ENSMUST00000102968 H4c4 protein_coding Interval_89731 chr2 25046947 25047626 + 0 NA intron (ENSMUSG00000036833.16, intron 24 of 33) protein_coding-intron (ENSMUSG00000036833.16, intron 25 of 34) -4380 ENSMUSG00000036833.16 ENSMUSG00000036833 ENSMUST00000141584 Pnpla7 protein_coding Interval_1625 chr1 30387890 30388369 + 0 NA Intergenic Intergenic -54732 ENSMUSG00000098883.1 ENSMUSG00000098883 ENSMUST00000184585 Gm27430 miRNA Interval_66659 chr16 35913253 35913948 + 0 NA Intergenic Intergenic -6864 ENSMUSG00000062279.6 ENSMUSG00000062279 ENSMUST00000078393 Gm10237 processed_pseudogene Interval_21689 chr11 3714196 3714907 + 0 NA exon (ENSMUSG00000020435.17, exon 8 of 14) protein_coding-exon (ENSMUSG00000020435.17, exon 8 of 14) -16225 ENSMUSG00000083015.1 ENSMUSG00000083015 ENSMUST00000117960 Gm16518 processed_pseudogene Interval_158913 chr8 87902195 87902473 + 0 NA intron (ENSMUSG00000045333.15, intron 2 of 3) protein_coding-intron (ENSMUSG00000045333.15, intron 2 of 7) 51528 ENSMUSG00000045333.15 ENSMUSG00000045333 ENSMUST00000173092 Zfp423 protein_coding Interval_146431 chr7 45847404 45847604 + 0 NA intron (ENSMUSG00000002771.12, intron 10 of 12) protein_coding-intron (ENSMUSG00000002771.12, intron 9 of 11) 13638 ENSMUSG00000110020.1 ENSMUSG00000110020 ENSMUST00000210177 Gm45441 antisense Interval_10202 chr1 167105118 167105352 + 0 NA Intergenic Intergenic -35920 ENSMUSG00000102870.1 ENSMUSG00000102870 ENSMUST00000192761 Gm17868 unprocessed_pseudogene Interval_55768 chr14 99844019 99844245 + 0 NA Intergenic Intergenic -8318 ENSMUSG00000087144.1 ENSMUSG00000087144 ENSMUST00000147698 Gm5958 processed_pseudogene Interval_154035 chr8 12112241 12113351 + 0 NA Intergenic Intergenic 164457 ENSMUSG00000109995.1 ENSMUSG00000109995 ENSMUST00000209977 B020031H02Rik lincRNA Interval_116359 chr4 110186141 110187577 + 0 NA Intergenic Intergenic 100668 ENSMUSG00000028546.17 ENSMUSG00000028546 ENSMUST00000142722 Elavl4 protein_coding Interval_161715 chr8 122294218 122294855 + 0 NA intron (ENSMUSG00000049577.15, intron 1 of 9) protein_coding-intron (ENSMUSG00000049577.15, intron 1 of 9) 35916 ENSMUSG00000043903.4 ENSMUSG00000043903 ENSMUST00000055537 Zfp469 protein_coding Interval_121386 chr4 155421064 155422966 + 0 NA promoter-TSS (ENSMUSG00000084803.8) processed_transcript-promoter-TSS (ENSMUSG00000084803.8) -311 ENSMUSG00000084803.8 ENSMUSG00000084803 ENSMUST00000166858 5830444B04Rik processed_transcript Interval_13805 chr10 22710307 22710820 + 0 NA intron (ENSMUSG00000071359.13, intron 2 of 6) protein_coding-intron (ENSMUSG00000071359.13, intron 2 of 6) -4178 ENSMUSG00000071359.13 ENSMUSG00000071359 ENSMUST00000138022 Tbpl1 protein_coding Interval_89371 chr2 20099436 20100232 + 0 NA intron (ENSMUSG00000036617.17, intron 1 of 7) protein_coding-intron (ENSMUSG00000036617.17, intron 1 of 7) -61940 ENSMUSG00000082164.1 ENSMUSG00000082164 ENSMUST00000121607 Gm13360 processed_pseudogene Interval_99281 chr2 158629018 158629638 + 0 NA TTS (ENSMUSG00000037761.16) protein_coding-TTS (ENSMUSG00000037761.16) 4440 ENSMUSG00000037761.16 ENSMUSG00000037761 ENSMUST00000183586 Actr5 protein_coding Interval_42747 chr13 18891951 18892251 + 0 NA Intergenic Intergenic -30476 ENSMUSG00000089046.1 ENSMUSG00000089046 ENSMUST00000158421 Gm26172 snoRNA Interval_3520 chr1 59286049 59287001 + 0 NA intron (ENSMUSG00000026023.16, intron 6 of 13) protein_coding-intron (ENSMUSG00000026023.16, intron 6 of 13) -12411 ENSMUSG00000026023.16 ENSMUSG00000026023 ENSMUST00000162906 Cdk15 protein_coding Interval_106833 chr3 101205857 101206907 + 0 NA TTS (ENSMUSG00000082415.1) processed_pseudogene-TTS (ENSMUSG00000082415.1) 1017 ENSMUSG00000082415.1 ENSMUSG00000082415 ENSMUST00000120887 Gm12486 processed_pseudogene Interval_145922 chr7 41880039 41881622 + 0 NA Intergenic Intergenic -8118 ENSMUSG00000090383.2 ENSMUSG00000090383 ENSMUST00000232976 Vmn2r58 protein_coding Interval_81935 chr18 66002025 66003113 + 0 NA promoter-TSS (ENSMUSG00000041891.16) protein_coding-promoter-TSS (ENSMUSG00000041891.16) 70 ENSMUSG00000041891.16 ENSMUSG00000041891 ENSMUST00000236070 Lman1 protein_coding Interval_37104 chr12 58425973 58426173 + 0 NA Intergenic Intergenic -156783 ENSMUSG00000045930.3 ENSMUSG00000045930 ENSMUST00000062254 Clec14a protein_coding Interval_116289 chr4 109341405 109342217 + 0 NA intron (ENSMUSG00000028552.13, intron 12 of 24) protein_coding-intron (ENSMUSG00000028552.13, intron 12 of 24) -28737 ENSMUSG00000028552.13 ENSMUSG00000028552 ENSMUST00000177140 Eps15 protein_coding Interval_150857 chr7 115839236 115839500 + 0 NA intron (ENSMUSG00000051910.13, intron 2 of 11) protein_coding-intron (ENSMUSG00000051910.13, intron 2 of 16) 6783 ENSMUSG00000051910.13 ENSMUSG00000051910 ENSMUST00000206912 Sox6 protein_coding Interval_93515 chr2 73726460 73726680 + 0 NA intron (ENSMUSG00000056486.18, intron 1 of 9) protein_coding-intron (ENSMUSG00000056486.18, intron 1 of 12) 68300 ENSMUSG00000085838.1 ENSMUSG00000085838 ENSMUST00000123613 Chn1os1 antisense Interval_10139 chr1 166041421 166041959 + 0 NA Intergenic Intergenic 2001 ENSMUSG00000102890.1 ENSMUSG00000102890 ENSMUST00000195801 Gm7626 processed_pseudogene Interval_46738 chr13 69752873 69753075 + 0 NA Intergenic Intergenic -13085 ENSMUSG00000052981.6 ENSMUSG00000052981 ENSMUST00000065118 Ube2ql1 protein_coding Interval_88370 chr2 4513943 4514823 + 0 NA intron (ENSMUSG00000026657.17, intron 7 of 24) protein_coding-intron (ENSMUSG00000026657.17, intron 6 of 23) -47713 ENSMUSG00000086874.1 ENSMUSG00000086874 ENSMUST00000139479 Gm13175 antisense Interval_116593 chr4 115938960 115940448 + 0 NA intron (ENSMUSG00000028707.15, intron 1 of 4) protein_coding-intron (ENSMUSG00000028707.15, intron 1 of 4) 222 ENSMUSG00000028707.15 ENSMUSG00000028707 ENSMUST00000084338 Dmbx1 protein_coding Interval_72016 chr17 27580488 27581188 + 0 NA TTS (ENSMUSG00000024213.14) protein_coding-TTS (ENSMUSG00000024213.14) -15172 ENSMUSG00000062753.14 ENSMUSG00000062753 ENSMUST00000138728 AI413582 protein_coding Interval_2830 chr1 46022167 46022639 + 0 NA intron (ENSMUSG00000044457.8, intron 3 of 3) transcribed_processed_pseudogene-intron (ENSMUSG00000044457.8, intron 4 of 4) 7843 ENSMUSG00000044457.8 ENSMUSG00000044457 ENSMUST00000187808 Stk-ps2 transcribed_processed_pseudogene Interval_167035 chr9 64727202 64727706 + 0 NA promoter-TSS (ENSMUSG00000004771.12) protein_coding-intron (ENSMUSG00000004771.12, intron 1 of 3) -724 ENSMUSG00000104953.1 ENSMUSG00000104953 ENSMUST00000197528 Gm47308 miRNA Interval_16035 chr10 60237576 60238007 + 0 NA Intergenic Intergenic -26540 ENSMUSG00000077090.1 ENSMUSG00000077090 ENSMUST00000103902 Gm22117 miRNA Interval_21280 chr10 127636110 127636831 + 0 NA promoter-TSS (ENSMUSG00000112696.1) processed_pseudogene-promoter-TSS (ENSMUSG00000112696.1) -83 ENSMUSG00000112696.1 ENSMUSG00000112696 ENSMUST00000219311 Gm48815 processed_pseudogene Interval_98988 chr2 156497876 156499190 + 0 NA intron (ENSMUSG00000027624.20, intron 6 of 6) protein_coding-intron (ENSMUSG00000027624.20, intron 5 of 21) -7861 ENSMUSG00000027624.20 ENSMUSG00000027624 ENSMUST00000137067 Epb41l1 protein_coding Interval_152505 chr7 133646034 133646827 + 0 NA intron (ENSMUSG00000039990.16, intron 6 of 23) protein_coding-intron (ENSMUSG00000039990.16, intron 6 of 24) -10227 ENSMUSG00000039990.16 ENSMUSG00000039990 ENSMUST00000137338 Edrf1 protein_coding Interval_59666 chr15 57744667 57745005 + 0 NA intron (ENSMUSG00000071757.10, intron 1 of 2) protein_coding-intron (ENSMUSG00000071757.10, intron 1 of 3) -6170 ENSMUSG00000047807.10 ENSMUSG00000047807 ENSMUST00000176703 9330154K18Rik antisense Interval_138947 chr6 93710365 93710725 + 0 NA intron (ENSMUSG00000045095.16, intron 13 of 24) protein_coding-intron (ENSMUSG00000045095.16, intron 12 of 21) -60320 ENSMUSG00000107739.1 ENSMUSG00000107739 ENSMUST00000203479 Gm7812 processed_pseudogene Interval_61297 chr15 80663256 80664266 + 0 NA Intergenic Intergenic -8086 ENSMUSG00000022408.7 ENSMUSG00000022408 ENSMUST00000023044 Fam83f protein_coding Interval_2937 chr1 51331680 51331881 + 0 NA intron (ENSMUSG00000101799.1, intron 1 of 4) antisense-intron (ENSMUSG00000101799.1, intron 1 of 4) 1999 ENSMUSG00000101799.1 ENSMUSG00000101799 ENSMUST00000189867 9330175M20Rik antisense Interval_98363 chr2 151819734 151820163 + 0 NA Intergenic Intergenic -9119 ENSMUSG00000087033.1 ENSMUSG00000087033 ENSMUST00000127230 Gm14155 lincRNA Interval_110709 chr4 6688421 6689396 + 0 NA exon (ENSMUSG00000041272.11, exon 8 of 9) protein_coding-exon (ENSMUSG00000041272.11, exon 8 of 9) 739 ENSMUSG00000086052.1 ENSMUSG00000086052 ENSMUST00000137749 Gm11802 antisense Interval_2097 chr1 36408447 36408976 + 0 NA intron (ENSMUSG00000037432.15, intron 28 of 52) protein_coding-intron (ENSMUSG00000037432.15, intron 28 of 52) 23247 ENSMUSG00000037432.15 ENSMUSG00000037432 ENSMUST00000140452 Fer1l5 protein_coding Interval_91299 chr2 37552843 37553191 + 0 NA intron (ENSMUSG00000035437.15, intron 7 of 13) protein_coding-intron (ENSMUSG00000035437.15, intron 19 of 25) 33501 ENSMUSG00000026915.16 ENSMUSG00000026915 ENSMUST00000144206 Strbp protein_coding Interval_40665 chr12 106625909 106626368 + 0 NA Intergenic Intergenic 67388 ENSMUSG00000091583.1 ENSMUSG00000091583 ENSMUST00000146663 Gm17033 lincRNA Interval_78517 chr18 14002516 14003354 + 0 NA Intergenic Intergenic -99465 ENSMUSG00000117600.1 ENSMUSG00000117600 ENSMUST00000234954 Gm50094 TEC Interval_56898 chr14 122953075 122953722 + 0 NA intron (ENSMUSG00000085423.1, intron 1 of 1) protein_coding-intron (ENSMUSG00000041594.18, intron 5 of 17) 1279 ENSMUSG00000085423.1 ENSMUSG00000085423 ENSMUST00000136187 4930594M22Rik antisense Interval_33306 chr11 115830395 115831830 + 0 NA promoter-TSS (ENSMUSG00000020782.18) protein_coding-promoter-TSS (ENSMUSG00000020782.18) 7054 ENSMUSG00000020782.18 ENSMUSG00000020782 ENSMUST00000132999 Llgl2 protein_coding Interval_121565 chr5 3484362 3484918 + 0 NA intron (ENSMUSG00000040274.11, intron 5 of 7) protein_coding-intron (ENSMUSG00000040274.11, intron 4 of 6) -3767 ENSMUSG00000106588.1 ENSMUSG00000106588 ENSMUST00000168422 Gm17590 antisense Interval_112230 chr4 37165859 37166491 + 0 NA Intergenic Intergenic -26301 ENSMUSG00000080969.1 ENSMUSG00000080969 ENSMUST00000121654 Taf9-ps processed_pseudogene Interval_167615 chr9 71168667 71169307 + 0 NA promoter-TSS (ENSMUSG00000032204.13) protein_coding-promoter-TSS (ENSMUSG00000032204.13) 211 ENSMUSG00000111429.1 ENSMUSG00000111429 ENSMUST00000217021 Gm32511 antisense Interval_45323 chr13 54383721 54385302 + 0 NA TTS (ENSMUSG00000025867.8) protein_coding-TTS (ENSMUSG00000025867.8) 13162 ENSMUSG00000025867.8 ENSMUSG00000025867 ENSMUST00000026985 Cplx2 protein_coding Interval_88553 chr2 6071080 6072430 + 0 NA Intergenic Intergenic 21328 ENSMUSG00000043241.14 ENSMUSG00000043241 ENSMUST00000144901 Upf2 protein_coding Interval_15523 chr10 50726876 50727070 + 0 NA intron (ENSMUSG00000038774.9, intron 24 of 41) protein_coding-intron (ENSMUSG00000038774.9, intron 24 of 41) 30501 ENSMUSG00000112927.1 ENSMUSG00000112927 ENSMUST00000217818 Gm48332 TEC Interval_86202 chr19 37743393 37743630 + 0 NA Intergenic Intergenic -20088 ENSMUSG00000117989.1 ENSMUSG00000117989 ENSMUST00000235833 Gm9066 processed_pseudogene Interval_60810 chr15 76899021 76901089 + 0 NA promoter-TSS (ENSMUSG00000055041.8) protein_coding-promoter-TSS (ENSMUSG00000055041.8) 90 ENSMUSG00000055041.8 ENSMUSG00000055041 ENSMUST00000230815 Commd5 protein_coding Interval_113985 chr4 62274749 62274953 + 0 NA intron (ENSMUSG00000066152.11, intron 2 of 4) protein_coding-intron (ENSMUSG00000066152.11, intron 2 of 4) 10537 ENSMUSG00000096713.1 ENSMUSG00000096713 ENSMUST00000180367 Gm23148 snRNA Interval_153850 chr8 9859265 9859515 + 0 NA Intergenic Intergenic -4861 ENSMUSG00000067627.2 ENSMUSG00000067627 ENSMUST00000088080 Gm10217 protein_coding Interval_148859 chr7 89358271 89358459 + 0 NA intron (ENSMUSG00000039428.11, intron 1 of 8) protein_coding-intron (ENSMUSG00000039428.11, intron 1 of 8) 19995 ENSMUSG00000109327.1 ENSMUSG00000109327 ENSMUST00000207056 Gm44995 antisense Interval_33998 chr11 119913036 119914452 + 0 NA promoter-TSS (ENSMUSG00000025371.12) protein_coding-promoter-TSS (ENSMUSG00000025371.12) -271 ENSMUSG00000025371.12 ENSMUSG00000025371 ENSMUST00000137055 Chmp6 protein_coding Interval_42197 chr13 9794487 9794718 + 0 NA Intergenic Intergenic -25909 ENSMUSG00000113754.1 ENSMUSG00000113754 ENSMUST00000223507 Gm47401 processed_pseudogene Interval_36258 chr12 40414861 40415065 + 0 NA intron (ENSMUSG00000055917.15, intron 1 of 12) protein_coding-intron (ENSMUSG00000055917.15, intron 1 of 11) -31120 ENSMUSG00000035954.10 ENSMUSG00000035954 ENSMUST00000220850 Dock4 protein_coding Interval_66812 chr16 37809073 37809623 + 0 NA intron (ENSMUSG00000022816.11, intron 1 of 2) protein_coding-intron (ENSMUSG00000022816.11, intron 2 of 10) 32293 ENSMUSG00000022816.11 ENSMUSG00000022816 ENSMUST00000123077 Fstl1 protein_coding Interval_80831 chr18 47858588 47859215 + 0 NA Intergenic Intergenic 49338 ENSMUSG00000118110.1 ENSMUSG00000118110 ENSMUST00000237308 Gm50224 processed_pseudogene Interval_50316 chr14 11810971 11811446 + 0 NA intron (ENSMUSG00000021745.14, intron 2 of 3) protein_coding-intron (ENSMUSG00000021745.14, intron 2 of 29) 43265 ENSMUSG00000114310.1 ENSMUSG00000114310 ENSMUST00000225152 Gm48602 TEC Interval_150235 chr7 108688157 108688351 + 0 NA Intergenic Intergenic -7947 ENSMUSG00000109070.2 ENSMUSG00000109070 ENSMUST00000207188 Olfr511-ps1 unprocessed_pseudogene Interval_166615 chr9 61319961 61320378 + 0 NA Intergenic Intergenic -26360 ENSMUSG00000111658.1 ENSMUSG00000111658 ENSMUST00000213377 B930092H01Rik lincRNA Interval_160511 chr8 110167748 110169255 + 0 NA promoter-TSS (ENSMUSG00000003657.9) protein_coding-promoter-TSS (ENSMUSG00000003657.9) -291 ENSMUSG00000003657.9 ENSMUSG00000003657 ENSMUST00000003754 Calb2 protein_coding Interval_41827 chr12 119992721 119993498 + 0 NA intron (ENSMUSG00000048004.15, intron 1 of 4) protein_coding-intron (ENSMUSG00000048004.15, intron 1 of 3) -7418 ENSMUSG00000098707.1 ENSMUSG00000098707 ENSMUST00000184147 Gm27236 processed_pseudogene Interval_60260 chr15 70923613 70924256 + 0 NA Intergenic Intergenic 38530 ENSMUSG00000116168.1 ENSMUSG00000116168 ENSMUST00000229766 Gm49430 processed_pseudogene Interval_72568 chr17 30714489 30714988 + 0 NA intron (ENSMUSG00000033826.10, intron 30 of 90) protein_coding-intron (ENSMUSG00000033826.10, intron 32 of 92) 44098 ENSMUSG00000033826.10 ENSMUSG00000033826 ENSMUST00000235567 Dnah8 protein_coding Interval_171159 chr9 114825127 114825332 + 0 NA intron (ENSMUSG00000041012.4, intron 1 of 1) protein_coding-intron (ENSMUSG00000041012.4, intron 1 of 3) -12944 ENSMUSG00000084638.1 ENSMUSG00000084638 ENSMUST00000122689 Gm23889 snRNA Interval_27195 chr11 64000192 64001206 + 0 NA intron (ENSMUSG00000042148.8, intron 4 of 6) protein_coding-intron (ENSMUSG00000042148.8, intron 4 of 6) -11916 ENSMUSG00000084884.1 ENSMUSG00000084884 ENSMUST00000130860 Gm12289 antisense Interval_31496 chr11 101022598 101022807 + 0 NA intron (ENSMUSG00000019302.16, intron 5 of 21) protein_coding-intron (ENSMUSG00000019302.16, intron 5 of 21) -7638 ENSMUSG00000098415.1 ENSMUSG00000098415 ENSMUST00000185166 Mir6928 miRNA Interval_11557 chr1 182677763 182678273 + 0 NA Intergenic Intergenic -1921 ENSMUSG00000104376.1 ENSMUSG00000104376 ENSMUST00000192593 Gm37516 TEC Interval_30247 chr11 91877377 91877577 + 0 NA Intergenic Intergenic -46087 ENSMUSG00000081630.1 ENSMUSG00000081630 ENSMUST00000120660 Gm11498 processed_pseudogene Interval_70172 chr17 5949101 5949800 + 0 NA intron (ENSMUSG00000023805.17, intron 1 of 25) protein_coding-intron (ENSMUSG00000023805.17, intron 1 of 25) 10363 ENSMUSG00000116734.1 ENSMUSG00000116734 ENSMUST00000231634 Gm8376 processed_pseudogene Interval_153758 chr8 7079224 7080972 + 0 NA Intergenic Intergenic 39941 ENSMUSG00000108852.1 ENSMUSG00000108852 ENSMUST00000208436 Gm44911 processed_pseudogene Interval_26803 chr11 60711332 60711956 + 0 NA intron (ENSMUSG00000020536.12, intron 17 of 20) protein_coding-intron (ENSMUSG00000020536.12, intron 17 of 21) 7447 ENSMUSG00000020536.12 ENSMUSG00000020536 ENSMUST00000128749 Llgl1 protein_coding Interval_31149 chr11 98457201 98458886 + 0 NA Intergenic Intergenic 10975 ENSMUSG00000019312.10 ENSMUSG00000019312 ENSMUST00000129034 Grb7 protein_coding Interval_138510 chr6 88819003 88819381 + 0 NA intron (ENSMUSG00000033174.17, intron 6 of 7) protein_coding-intron (ENSMUSG00000033174.17, intron 6 of 7) -3938 ENSMUSG00000033174.17 ENSMUSG00000033174 ENSMUST00000205045 Mgll protein_coding Interval_140004 chr6 113350270 113352059 + 0 NA Intergenic Intergenic 4001 ENSMUSG00000108162.1 ENSMUSG00000108162 ENSMUST00000204099 Gm20589 processed_pseudogene Interval_48598 chr13 100580898 100581842 + 0 NA Intergenic Intergenic -21338 ENSMUSG00000114332.1 ENSMUSG00000114332 ENSMUST00000223825 Gm8847 processed_pseudogene Interval_131971 chr5 141560696 141560980 + 0 NA intron (ENSMUSG00000039683.16, intron 1 of 9) protein_coding-intron (ENSMUSG00000039683.16, intron 1 of 44) 5411 ENSMUSG00000089164.1 ENSMUSG00000089164 ENSMUST00000158539 Gm24131 snRNA Interval_11293 chr1 180799862 180800112 + 0 NA TTS (ENSMUSG00000060743.12) protein_coding-TTS (ENSMUSG00000060743.12) -13789 ENSMUSG00000073485.3 ENSMUSG00000073485 ENSMUST00000097448 H3f3aos antisense Interval_6979 chr1 121505889 121508162 + 0 NA TTS (ENSMUSG00000026339.18) protein_coding-TTS (ENSMUSG00000026339.18) 778 ENSMUSG00000083582.1 ENSMUSG00000083582 ENSMUST00000120499 Gm15393 processed_pseudogene Interval_41232 chr12 112001024 112001588 + 0 NA intron (ENSMUSG00000054003.13, intron 4 of 31) protein_coding-intron (ENSMUSG00000054003.13, intron 7 of 35) -11760 ENSMUSG00000054003.13 ENSMUSG00000054003 ENSMUST00000193630 Tdrd9 protein_coding Interval_77103 chr17 86589099 86589445 + 0 NA intron (ENSMUSG00000045038.14, intron 11 of 14) protein_coding-intron (ENSMUSG00000045038.14, intron 12 of 15) -84040 ENSMUSG00000071036.2 ENSMUSG00000071036 ENSMUST00000095186 Gm10309 protein_coding Interval_31057 chr11 97915556 97916898 + 0 NA Intergenic Intergenic 25513 ENSMUSG00000093013.1 ENSMUSG00000093013 ENSMUST00000175272 Gm22461 miRNA Interval_147606 chr7 69398515 69398809 + 0 NA Intergenic Intergenic -1730 ENSMUSG00000110028.1 ENSMUSG00000110028 ENSMUST00000209231 Gm34838 lincRNA Interval_57033 chr15 4894667 4895596 + 0 NA Intergenic Intergenic 10011 ENSMUSG00000115205.1 ENSMUSG00000115205 ENSMUST00000228510 Gm16374 processed_pseudogene Interval_77691 chr17 94327850 94328209 + 0 NA TTS (ENSMUSG00000077433.1) snRNA-TTS (ENSMUSG00000077433.1) 834 ENSMUSG00000077433.1 ENSMUSG00000077433 ENSMUST00000104245 Gm22593 snRNA Interval_80608 chr18 44581956 44582238 + 0 NA intron (ENSMUSG00000071856.10, intron 3 of 18) protein_coding-intron (ENSMUSG00000071856.10, intron 3 of 18) -80006 ENSMUSG00000097610.2 ENSMUSG00000097610 ENSMUST00000202771 A930012L18Rik antisense Interval_56784 chr14 122072427 122073308 + 0 NA intron (ENSMUSG00000115121.1, intron 1 of 4) lincRNA-intron (ENSMUSG00000115121.1, intron 1 of 4) 18359 ENSMUSG00000115121.1 ENSMUSG00000115121 ENSMUST00000226723 Gm49236 lincRNA Interval_20588 chr10 119232443 119232702 + 0 NA intron (ENSMUSG00000020114.12, intron 1 of 14) protein_coding-intron (ENSMUSG00000020114.12, intron 1 of 14) -19963 ENSMUSG00000020114.12 ENSMUSG00000020114 ENSMUST00000126373 Cand1 protein_coding Interval_146393 chr7 45667109 45667926 + 0 NA Intergenic Intergenic -1209 ENSMUSG00000055978.5 ENSMUSG00000055978 ENSMUST00000210470 Fut2 protein_coding Interval_94137 chr2 84622048 84624738 + 0 NA TTS (ENSMUSG00000034101.14) protein_coding-TTS (ENSMUSG00000034101.14) -13696 ENSMUSG00000034101.14 ENSMUSG00000034101 ENSMUST00000149317 Ctnnd1 protein_coding Interval_45841 chr13 58482361 58483897 + 0 NA Intergenic Intergenic 40108 ENSMUSG00000114654.1 ENSMUSG00000114654 ENSMUST00000225848 Gm47918 lincRNA Interval_116362 chr4 110272269 110273122 + 0 NA intron (ENSMUSG00000028546.17, intron 1 of 3) protein_coding-intron (ENSMUSG00000028546.17, intron 1 of 6) 14832 ENSMUSG00000028546.17 ENSMUSG00000028546 ENSMUST00000142722 Elavl4 protein_coding Interval_127425 chr5 103838317 103839069 + 0 NA intron (ENSMUSG00000029313.18, intron 11 of 12) protein_coding-intron (ENSMUSG00000029313.18, intron 11 of 19) 35676 ENSMUSG00000029312.12 ENSMUSG00000029312 ENSMUST00000147184 Klhl8 protein_coding Interval_17085 chr10 71278391 71278624 + 0 NA intron (ENSMUSG00000019927.6, intron 1 of 3) protein_coding-intron (ENSMUSG00000019927.6, intron 1 of 6) -9222 ENSMUSG00000112813.1 ENSMUSG00000112813 ENSMUST00000218529 Gm34376 lincRNA Interval_18942 chr10 93283507 93283702 + 0 NA TTS (ENSMUSG00000008398.16) protein_coding-TTS (ENSMUSG00000008398.16) 27365 ENSMUSG00000008398.16 ENSMUSG00000008398 ENSMUST00000133365 Elk3 protein_coding Interval_56498 chr14 119233134 119233794 + 0 NA intron (ENSMUSG00000053465.6, intron 1 of 1) protein_coding-intron (ENSMUSG00000053465.6, intron 1 of 1) -44960 ENSMUSG00000115684.1 ENSMUSG00000115684 ENSMUST00000227446 Gm6087 processed_pseudogene Interval_141931 chr6 135512500 135513509 + 0 NA Intergenic Intergenic -71188 ENSMUSG00000065187.1 ENSMUSG00000065187 ENSMUST00000083253 Gm25136 snoRNA Interval_149365 chr7 97737515 97738547 + 0 NA promoter-TSS (ENSMUSG00000042797.9) protein_coding-promoter-TSS (ENSMUSG00000042797.9) 258 ENSMUSG00000042797.9 ENSMUSG00000042797 ENSMUST00000205932 Aqp11 protein_coding Interval_49928 chr13 118403542 118404122 + 0 NA Intergenic Intergenic -17151 ENSMUSG00000021731.10 ENSMUSG00000021731 ENSMUST00000225170 Mrps30 protein_coding Interval_126756 chr5 92653662 92653984 + 0 NA exon (ENSMUSG00000050050.17, exon 10 of 10) protein_coding-exon (ENSMUSG00000050050.17, exon 10 of 10) -9939 ENSMUSG00000050050.17 ENSMUSG00000050050 ENSMUST00000150359 Ccdc158 protein_coding Interval_96266 chr2 121073305 121073685 + 0 NA intron (ENSMUSG00000053675.8, intron 4 of 12) protein_coding-intron (ENSMUSG00000053675.8, intron 4 of 12) 12327 ENSMUSG00000053675.8 ENSMUSG00000053675 ENSMUST00000142674 Tgm5 protein_coding Interval_109351 chr3 139564601 139565957 + 0 NA intron (ENSMUSG00000047940.13, intron 12 of 13) protein_coding-intron (ENSMUSG00000047940.13, intron 12 of 13) -84100 ENSMUSG00000106574.1 ENSMUSG00000106574 ENSMUST00000199447 Gm2451 processed_pseudogene Interval_146199 chr7 44649837 44650344 + 0 NA intron (ENSMUSG00000030739.18, intron 1 of 25) protein_coding-intron (ENSMUSG00000030739.18, intron 10 of 41) 4662 ENSMUSG00000109352.1 ENSMUSG00000109352 ENSMUST00000209087 Gm18256 processed_pseudogene Interval_109082 chr3 135628536 135628869 + 0 NA intron (ENSMUSG00000028163.17, intron 4 of 22) protein_coding-intron (ENSMUSG00000028163.17, intron 6 of 24) -24843 ENSMUSG00000028163.17 ENSMUSG00000028163 ENSMUST00000196246 Nfkb1 protein_coding Interval_141080 chr6 124850590 124851258 + 0 NA promoter-TSS (ENSMUSG00000023191.9) protein_coding-promoter-TSS (ENSMUSG00000023191.9) 4000 ENSMUSG00000023191.9 ENSMUSG00000023191 ENSMUST00000135546 P3h3 protein_coding Interval_141652 chr6 132145684 132145936 + 0 NA Intergenic Intergenic -5195 ENSMUSG00000107973.1 ENSMUSG00000107973 ENSMUST00000203491 Gm43978 processed_pseudogene Interval_113466 chr4 55199520 55199724 + 0 NA intron (ENSMUSG00000087614.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000087614.1, intron 1 of 2) 36614 ENSMUSG00000081177.1 ENSMUSG00000081177 ENSMUST00000118033 Gm12509 processed_pseudogene Interval_10909 chr1 176877859 176878140 + 0 NA exon (ENSMUSG00000026504.17, exon 12 of 18) protein_coding-exon (ENSMUSG00000026504.17, exon 12 of 18) -1835 ENSMUSG00000093132.1 ENSMUSG00000093132 ENSMUST00000175391 Gm25993 miRNA Interval_134084 chr6 19075462 19075699 + 0 NA Intergenic Intergenic 28743 ENSMUSG00000084650.1 ENSMUSG00000084650 ENSMUST00000122701 Gm22718 misc_RNA Interval_28250 chr11 74687724 74688156 + 0 NA intron (ENSMUSG00000020745.15, intron 5 of 9) protein_coding-intron (ENSMUSG00000020745.15, intron 5 of 10) 36378 ENSMUSG00000020745.15 ENSMUSG00000020745 ENSMUST00000155493 Pafah1b1 protein_coding Interval_48828 chr13 103758686 103759061 + 0 NA intron (ENSMUSG00000032621.8, intron 4 of 6) protein_coding-intron (ENSMUSG00000032621.8, intron 6 of 11) 10475 ENSMUSG00000032621.8 ENSMUSG00000032621 ENSMUST00000211139 Srek1 protein_coding Interval_42548 chr13 15146031 15147091 + 0 NA Intergenic Intergenic 27929 ENSMUSG00000113389.1 ENSMUSG00000113389 ENSMUST00000223112 Gm9512 processed_pseudogene Interval_157189 chr8 67405936 67406930 + 0 NA Intergenic Intergenic -41429 ENSMUSG00000074292.4 ENSMUSG00000074292 ENSMUST00000148610 Gm10660 lincRNA Interval_94116 chr2 84430342 84431084 + 0 NA Intergenic Intergenic -5447 ENSMUSG00000059588.13 ENSMUSG00000059588 ENSMUST00000151295 Calcrl protein_coding Interval_80106 chr18 37668488 37669763 + 0 NA exon (ENSMUSG00000103332.1, exon 1 of 4) protein_coding-exon (ENSMUSG00000103332.1, exon 1 of 4) 172 ENSMUSG00000103332.1 ENSMUSG00000103332 ENSMUST00000193869 Pcdhga2 protein_coding Interval_35074 chr12 17084305 17084665 + 0 NA Intergenic Intergenic 19072 ENSMUSG00000113447.1 ENSMUSG00000113447 ENSMUST00000221508 Gm48538 lincRNA Interval_90632 chr2 31581377 31582983 + 0 NA intron (ENSMUSG00000026843.15, intron 1 of 5) protein_coding-intron (ENSMUSG00000026843.15, intron 1 of 17) 9366 ENSMUSG00000026843.15 ENSMUSG00000026843 ENSMUST00000132534 Fubp3 protein_coding Interval_31952 chr11 104052699 104053634 + 0 NA Intergenic Intergenic 73577 ENSMUSG00000062421.13 ENSMUSG00000062421 ENSMUST00000154089 Arf2 protein_coding Interval_58545 chr15 35943742 35944915 + 0 NA Intergenic Intergenic -7159 ENSMUSG00000014313.15 ENSMUSG00000014313 ENSMUST00000227231 Cox6c protein_coding Interval_163782 chr9 25636696 25637287 + 0 NA Intergenic Intergenic 48372 ENSMUSG00000110857.1 ENSMUSG00000110857 ENSMUST00000215641 Gm48330 processed_pseudogene Interval_110155 chr3 153835830 153836074 + 0 NA TTS (ENSMUSG00000086438.2) antisense-TTS (ENSMUSG00000086438.2) 4782 ENSMUSG00000077174.1 ENSMUSG00000077174 ENSMUST00000103986 Gm25757 snoRNA Interval_38029 chr12 74237935 74239129 + 0 NA intron (ENSMUSG00000044912.11, intron 5 of 5) protein_coding-intron (ENSMUSG00000044912.11, intron 7 of 7) -3392 ENSMUSG00000100192.1 ENSMUSG00000100192 ENSMUST00000189898 Gm29587 antisense Interval_84928 chr19 18868468 18869164 + 0 NA intron (ENSMUSG00000024727.9, intron 30 of 38) protein_coding-intron (ENSMUSG00000024727.9, intron 30 of 38) -91855 ENSMUSG00000088601.1 ENSMUSG00000088601 ENSMUST00000157976 Gm24190 misc_RNA Interval_37174 chr12 59187561 59187836 + 0 NA intron (ENSMUSG00000021000.17, intron 28 of 29) protein_coding-intron (ENSMUSG00000021000.17, intron 23 of 24) 16738 ENSMUSG00000035329.7 ENSMUSG00000035329 ENSMUST00000161351 Fbxo33 protein_coding Interval_52002 chr14 34540384 34541452 + 0 NA intron (ENSMUSG00000021798.14, intron 12 of 13) protein_coding-intron (ENSMUSG00000021798.14, intron 12 of 13) -18117 ENSMUSG00000021797.2 ENSMUSG00000021797 ENSMUST00000022325 9230112D13Rik protein_coding Interval_38077 chr12 75529360 75530053 + 0 NA intron (ENSMUSG00000021051.10, intron 2 of 12) protein_coding-intron (ENSMUSG00000021051.10, intron 2 of 13) -20961 ENSMUSG00000112254.1 ENSMUSG00000112254 ENSMUST00000218033 Gm47690 TEC Interval_58066 chr15 27590892 27591479 + 0 NA intron (ENSMUSG00000022265.7, intron 3 of 4) protein_coding-intron (ENSMUSG00000022265.7, intron 10 of 11) 19691 ENSMUSG00000098416.1 ENSMUSG00000098416 ENSMUST00000184426 Mir7117 miRNA Interval_152672 chr7 136060683 136060972 + 0 NA Intergenic Intergenic 108029 ENSMUSG00000098031.1 ENSMUSG00000098031 ENSMUST00000183000 Gm9341 processed_pseudogene Interval_50913 chr14 20729273 20730083 + 0 NA promoter-TSS (ENSMUSG00000039308.6) protein_coding-promoter-TSS (ENSMUSG00000039308.6) 640 ENSMUSG00000039308.6 ENSMUSG00000039308 ENSMUST00000225320 Ndst2 protein_coding Interval_132750 chr5 147579076 147579357 + 0 NA intron (ENSMUSG00000029648.13, intron 23 of 29) protein_coding-intron (ENSMUSG00000029648.13, intron 23 of 29) 67591 ENSMUSG00000029648.13 ENSMUSG00000029648 ENSMUST00000031652 Flt1 protein_coding Interval_33323 chr11 115927313 115927960 + 0 NA promoter-TSS (ENSMUSG00000020752.11) protein_coding-promoter-TSS (ENSMUSG00000020752.11) -82 ENSMUSG00000020752.11 ENSMUSG00000020752 ENSMUST00000156776 Recql5 protein_coding Interval_129238 chr5 118375067 118375696 + 0 NA Intergenic Intergenic 21949 ENSMUSG00000106812.1 ENSMUSG00000106812 ENSMUST00000201179 Gm28563 lincRNA Interval_166182 chr9 57302660 57303060 + 0 NA Intergenic Intergenic 26555 ENSMUSG00000111457.1 ENSMUSG00000111457 ENSMUST00000214851 Gm18996 processed_pseudogene Interval_81742 chr18 64321995 64322270 + 0 NA intron (ENSMUSG00000086128.8, intron 1 of 2) antisense-intron (ENSMUSG00000086128.8, intron 1 of 2) -17888 ENSMUSG00000045991.19 ENSMUSG00000045991 ENSMUST00000175965 Onecut2 protein_coding Interval_122134 chr5 17924285 17924483 + 0 NA Intergenic Intergenic -38165 ENSMUSG00000028777.8 ENSMUSG00000028777 ENSMUST00000030561 Gnat3 protein_coding Interval_95582 chr2 112479945 112480355 + 0 NA exon (ENSMUSG00000074939.3, exon 1 of 1) protein_coding-exon (ENSMUSG00000074939.3, exon 1 of 1) 619 ENSMUSG00000074939.3 ENSMUSG00000074939 ENSMUST00000099589 Chrm5 protein_coding Interval_93635 chr2 75269380 75269678 + 0 NA intron (ENSMUSG00000100303.3, intron 4 of 5) lincRNA-intron (ENSMUSG00000100303.3, intron 3 of 5) 33696 ENSMUSG00000115959.1 ENSMUSG00000115959 ENSMUST00000229971 Gm18494 processed_pseudogene Interval_162546 chr9 4104692 4105406 + 0 NA Intergenic Intergenic -108873 ENSMUSG00000110691.1 ENSMUSG00000110691 ENSMUST00000211927 Gm5363 processed_pseudogene Interval_145203 chr7 30619154 30619460 + 0 NA intron (ENSMUSG00000036751.7, intron 2 of 2) protein_coding-intron (ENSMUSG00000036751.7, intron 3 of 3) -6460 ENSMUSG00000006313.5 ENSMUSG00000006313 ENSMUST00000006476 Upk1a protein_coding Interval_16803 chr10 68251296 68251549 + 0 NA intron (ENSMUSG00000019947.10, intron 2 of 9) protein_coding-intron (ENSMUSG00000019947.10, intron 2 of 10) 27318 ENSMUSG00000019947.10 ENSMUSG00000019947 ENSMUST00000218425 Arid5b protein_coding Interval_1746 chr1 33494950 33495323 + 0 NA intron (ENSMUSG00000026134.11, intron 4 of 5) protein_coding-intron (ENSMUSG00000026134.11, intron 10 of 13) 13035 ENSMUSG00000101682.1 ENSMUSG00000101682 ENSMUST00000185489 Gm29228 processed_pseudogene Interval_70074 chr17 5143360 5143948 + 0 NA intron (ENSMUSG00000069729.14, intron 4 of 19) protein_coding-intron (ENSMUSG00000069729.14, intron 4 of 18) -31544 ENSMUSG00000081783.2 ENSMUSG00000081783 ENSMUST00000122283 Gm15599 processed_pseudogene Interval_23149 chr11 20184623 20185015 + 0 NA Intergenic Intergenic 9916 ENSMUSG00000084442.1 ENSMUSG00000084442 ENSMUST00000122493 Gm26253 snRNA Interval_56326 chr14 117457223 117458029 + 0 NA intron (ENSMUSG00000058571.11, intron 3 of 9) protein_coding-intron (ENSMUSG00000058571.11, intron 3 of 8) 496221 ENSMUSG00000098648.1 ENSMUSG00000098648 ENSMUST00000183564 Mir6239 miRNA Interval_9349 chr1 156500069 156500759 + 0 NA Intergenic Intergenic -23598 ENSMUSG00000101523.2 ENSMUSG00000101523 ENSMUST00000190422 Csnk2a3 processed_pseudogene Interval_138575 chr6 89490548 89490894 + 0 NA intron (ENSMUSG00000030086.16, intron 4 of 5) protein_coding-intron (ENSMUSG00000030086.16, intron 4 of 7) 36734 ENSMUSG00000107680.1 ENSMUSG00000107680 ENSMUST00000205126 Gm43903 TEC Interval_76625 chr17 82934795 82935006 + 0 NA Intergenic Intergenic -21096 ENSMUSG00000117472.1 ENSMUSG00000117472 ENSMUST00000234284 Gm4601 processed_pseudogene Interval_86040 chr19 35639261 35639468 + 0 NA Intergenic Intergenic -33560 ENSMUSG00000092715.1 ENSMUSG00000092715 ENSMUST00000174974 Gm22853 rRNA Interval_22730 chr11 14072257 14073391 + 0 NA exon (ENSMUSG00000085452.1, exon 4 of 4) lincRNA-exon (ENSMUSG00000085452.1, exon 4 of 4) -89255 ENSMUSG00000081631.1 ENSMUSG00000081631 ENSMUST00000121451 Gm12005 processed_pseudogene Interval_59661 chr15 57693125 57696316 + 0 NA promoter-TSS (ENSMUSG00000071757.10) protein_coding-promoter-TSS (ENSMUSG00000071757.10) -1009 ENSMUSG00000071757.10 ENSMUSG00000071757 ENSMUST00000160990 Zhx2 protein_coding Interval_122707 chr5 24798749 24800881 + 0 NA Intergenic Intergenic 21022 ENSMUSG00000089475.1 ENSMUSG00000089475 ENSMUST00000158850 Gm25363 misc_RNA Interval_61874 chr15 84813407 84813650 + 0 NA intron (ENSMUSG00000016624.15, intron 2 of 11) protein_coding-intron (ENSMUSG00000016624.15, intron 2 of 12) -26079 ENSMUSG00000016624.15 ENSMUSG00000016624 ENSMUST00000160389 Phf21b protein_coding Interval_72357 chr17 29396986 29397229 + 0 NA Intergenic Intergenic 23756 ENSMUSG00000024013.15 ENSMUSG00000024013 ENSMUST00000144616 Fgd2 protein_coding Interval_112611 chr4 43558124 43559059 + 0 NA promoter-TSS (ENSMUSG00000028465.16) protein_coding-promoter-TSS (ENSMUSG00000028465.16) -4222 ENSMUSG00000028466.15 ENSMUSG00000028466 ENSMUST00000138623 Creb3 protein_coding Interval_91867 chr2 50757899 50758579 + 0 NA Intergenic Intergenic -100172 ENSMUSG00000082846.1 ENSMUSG00000082846 ENSMUST00000120738 Gm13484 processed_pseudogene Interval_119087 chr4 135452659 135454053 + 0 NA intron (ENSMUSG00000028803.18, intron 11 of 11) protein_coding-intron (ENSMUSG00000028803.18, intron 11 of 11) 2475 ENSMUSG00000103955.1 ENSMUSG00000103955 ENSMUST00000194277 Gm37270 TEC Interval_122853 chr5 26112468 26113080 + 0 NA Intergenic Intergenic -7412 ENSMUSG00000051940.2 ENSMUSG00000051940 ENSMUST00000063524 5031410I06Rik protein_coding Interval_119863 chr4 140564066 140565186 + 0 NA intron (ENSMUSG00000040964.16, intron 2 of 7) protein_coding-intron (ENSMUSG00000040964.16, intron 18 of 27) 52439 ENSMUSG00000040964.16 ENSMUSG00000040964 ENSMUST00000154979 Arhgef10l protein_coding Interval_41615 chr12 117027630 117029562 + 0 NA intron (ENSMUSG00000056553.14, intron 12 of 22) protein_coding-intron (ENSMUSG00000056553.14, intron 12 of 22) 122619 ENSMUSG00000099907.1 ENSMUSG00000099907 ENSMUST00000186114 Gm10421 processed_transcript Interval_35826 chr12 30686656 30686949 + 0 NA Intergenic Intergenic 99888 ENSMUSG00000043061.10 ENSMUSG00000043061 ENSMUST00000218826 Tmem18 protein_coding Interval_154719 chr8 22825272 22825561 + 0 NA Intergenic Intergenic -2871 ENSMUSG00000089484.1 ENSMUSG00000089484 ENSMUST00000158859 Gm24735 snRNA Interval_66295 chr16 32947894 32948259 + 0 NA intron (ENSMUSG00000022801.13, intron 1 of 17) protein_coding-intron (ENSMUSG00000022801.13, intron 1 of 20) 24858 ENSMUSG00000091997.1 ENSMUSG00000091997 ENSMUST00000163830 Gm6611 processed_pseudogene Interval_31330 chr11 100006367 100007334 + 0 NA Intergenic Intergenic 7137 ENSMUSG00000035592.2 ENSMUSG00000035592 ENSMUST00000138756 Krt33a protein_coding Interval_152788 chr7 137569721 137571026 + 0 NA Intergenic Intergenic -5785 ENSMUSG00000109973.1 ENSMUSG00000109973 ENSMUST00000209816 Gm45397 lincRNA Interval_399 chr1 4888206 4888764 + 0 NA intron (ENSMUSG00000033813.15, intron 4 of 9) protein_coding-intron (ENSMUSG00000033813.15, intron 4 of 9) -7834 ENSMUSG00000062588.4 ENSMUSG00000062588 ENSMUST00000078030 Gm6104 processed_pseudogene Interval_29836 chr11 87166991 87167391 + 0 NA intron (ENSMUSG00000018548.15, intron 11 of 23) protein_coding-intron (ENSMUSG00000018548.15, intron 11 of 23) -22883 ENSMUSG00000018548.15 ENSMUSG00000018548 ENSMUST00000154138 Trim37 protein_coding Interval_108870 chr3 132864174 132864502 + 0 NA intron (ENSMUSG00000106230.1, intron 1 of 3) lincRNA-intron (ENSMUSG00000106230.1, intron 1 of 3) 14258 ENSMUSG00000106230.1 ENSMUSG00000106230 ENSMUST00000197386 Gm29811 lincRNA Interval_115903 chr4 106132105 106132293 + 0 NA Intergenic Intergenic 5579 ENSMUSG00000081189.1 ENSMUSG00000081189 ENSMUST00000121815 Hspd1-ps4 processed_pseudogene Interval_150432 chr7 110568701 110568878 + 0 NA intron (ENSMUSG00000038371.15, intron 1 of 18) protein_coding-intron (ENSMUSG00000038371.15, intron 1 of 40) 41997 ENSMUSG00000060777.4 ENSMUSG00000060777 ENSMUST00000167650 Gm10087 processed_pseudogene Interval_48937 chr13 105221386 105221973 + 0 NA intron (ENSMUSG00000021720.11, intron 5 of 7) protein_coding-intron (ENSMUSG00000021720.11, intron 4 of 6) 1719 ENSMUSG00000077578.1 ENSMUSG00000077578 ENSMUST00000104390 Gm25631 snoRNA Interval_173581 chrX 99883328 99883970 + 0 NA Intergenic Intergenic 62628 ENSMUSG00000071719.2 ENSMUSG00000071719 ENSMUST00000096363 Tmem28 protein_coding Interval_40860 chr12 108926101 108926669 + 0 NA intron (ENSMUSG00000040877.16, intron 1 of 2) protein_coding-intron (ENSMUSG00000040877.16, intron 3 of 7) 13653 ENSMUSG00000040877.16 ENSMUSG00000040877 ENSMUST00000221510 Wdr25 protein_coding Interval_142970 chr6 147695014 147695273 + 0 NA intron (ENSMUSG00000085077.1, intron 2 of 2) lincRNA-intron (ENSMUSG00000085077.1, intron 2 of 2) 4902 ENSMUSG00000085077.1 ENSMUSG00000085077 ENSMUST00000141575 1700049E15Rik lincRNA Interval_77893 chr18 5084785 5085184 + 0 NA intron (ENSMUSG00000024236.18, intron 18 of 37) protein_coding-intron (ENSMUSG00000024236.18, intron 15 of 34) 49818 ENSMUSG00000024236.18 ENSMUSG00000024236 ENSMUST00000129543 Svil protein_coding Interval_112426 chr4 41190415 41190664 + 0 NA intron (ENSMUSG00000036241.3, intron 2 of 2) protein_coding-intron (ENSMUSG00000036241.3, intron 4 of 4) 7619 ENSMUSG00000036241.3 ENSMUSG00000036241 ENSMUST00000123642 Ube2r2 protein_coding Interval_84108 chr19 7253313 7254050 + 0 NA Intergenic Intergenic -6260 ENSMUSG00000088680.1 ENSMUSG00000088680 ENSMUST00000158055 Gm23997 rRNA Interval_30792 chr11 96487248 96487996 + 0 NA intron (ENSMUSG00000057058.16, intron 1 of 2) protein_coding-intron (ENSMUSG00000057058.16, intron 1 of 11) 3840 ENSMUSG00000057058.16 ENSMUSG00000057058 ENSMUST00000123814 Skap1 protein_coding Interval_105347 chr3 85245555 85246037 + 0 NA intron (ENSMUSG00000102805.5, intron 3 of 9) protein_coding-intron (ENSMUSG00000102805.5, intron 3 of 9) -49349 ENSMUSG00000102703.1 ENSMUSG00000102703 ENSMUST00000191953 Gm38313 TEC Interval_33268 chr11 115563301 115565045 + 0 NA promoter-TSS (ENSMUSG00000020739.11) protein_coding-promoter-TSS (ENSMUSG00000020739.11) -5942 ENSMUSG00000020739.11 ENSMUSG00000020739 ENSMUST00000134209 Nup85 protein_coding Interval_167626 chr9 71303729 71304177 + 0 NA Intergenic Intergenic -24768 ENSMUSG00000111181.1 ENSMUSG00000111181 ENSMUST00000214975 Gm48124 processed_pseudogene Interval_67569 chr16 51008644 51008923 + 0 NA Intergenic Intergenic -42347 ENSMUSG00000116706.1 ENSMUSG00000116706 ENSMUST00000231893 Gm32431 lincRNA Interval_167141 chr9 65605565 65607155 + 0 NA Intergenic Intergenic 19155 ENSMUSG00000041064.14 ENSMUSG00000041064 ENSMUST00000141046 Pif1 protein_coding Interval_111239 chr4 15562820 15563415 + 0 NA Intergenic Intergenic -31006 ENSMUSG00000083330.1 ENSMUSG00000083330 ENSMUST00000118099 Gm11859 processed_pseudogene Interval_85454 chr19 26679749 26680321 + 0 NA promoter-TSS (ENSMUSG00000024921.17) protein_coding-promoter-TSS (ENSMUSG00000024921.17) -56625 ENSMUSG00000093628.1 ENSMUSG00000093628 ENSMUST00000177453 Gm20616 antisense Interval_134336 chr6 25669431 25669874 + 0 NA exon (ENSMUSG00000039904.9, exon 2 of 2) protein_coding-exon (ENSMUSG00000039904.9, exon 2 of 2) 20140 ENSMUSG00000039904.9 ENSMUSG00000039904 ENSMUST00000054867 Gpr37 protein_coding Interval_96260 chr2 121028068 121028376 + 0 NA promoter-TSS (ENSMUSG00000023216.13) protein_coding-promoter-TSS (ENSMUSG00000023216.13) 8523 ENSMUSG00000023216.13 ENSMUSG00000023216 ENSMUST00000152217 Epb42 protein_coding Interval_1606 chr1 29737164 29737371 + 0 NA Intergenic Intergenic -75887 ENSMUSG00000118548.1 ENSMUSG00000118548 ENSMUST00000239107 AC125120.1 processed_pseudogene Interval_140584 chr6 119833866 119834169 + 0 NA intron (ENSMUSG00000030172.15, intron 1 of 20) protein_coding-intron (ENSMUSG00000030172.15, intron 1 of 5) -58903 ENSMUSG00000080719.1 ENSMUSG00000080719 ENSMUST00000121192 Gm15532 processed_pseudogene Interval_25367 chr11 46733157 46734072 + 0 NA Intergenic Intergenic -1466 ENSMUSG00000040405.13 ENSMUSG00000040405 ENSMUST00000047568 Havcr1 protein_coding Interval_5273 chr1 87170522 87170863 + 0 NA Intergenic Intergenic -12621 ENSMUSG00000036480.9 ENSMUSG00000036480 ENSMUST00000044533 Prss56 protein_coding Interval_37860 chr12 72651302 72651668 + 0 NA intron (ENSMUSG00000021094.10, intron 6 of 6) protein_coding-intron (ENSMUSG00000021094.10, intron 6 of 6) 13269 ENSMUSG00000021094.10 ENSMUSG00000021094 ENSMUST00000221674 Dhrs7 protein_coding Interval_24914 chr11 41218381 41219109 + 0 NA promoter-TSS (ENSMUSG00000086475.1) lincRNA-promoter-TSS (ENSMUSG00000086475.1) -92 ENSMUSG00000086475.1 ENSMUSG00000086475 ENSMUST00000133945 Platr13 lincRNA Interval_130570 chr5 128917125 128917976 + 0 NA intron (ENSMUSG00000029420.14, intron 1 of 3) protein_coding-intron (ENSMUSG00000029420.14, intron 1 of 21) 90996 ENSMUSG00000029428.13 ENSMUSG00000029428 ENSMUST00000199813 Stx2 protein_coding Interval_10743 chr1 173873552 173873767 + 0 NA promoter-TSS (ENSMUSG00000090272.9) protein_coding-promoter-TSS (ENSMUSG00000090272.9) -11160 ENSMUSG00000090272.9 ENSMUSG00000090272 ENSMUST00000187636 Mndal protein_coding Interval_174052 chrX 133387920 133388172 + 0 NA Intergenic Intergenic -11493 ENSMUSG00000088421.1 ENSMUSG00000088421 ENSMUST00000157796 Gm22552 misc_RNA Interval_45702 chr13 57066011 57066658 + 0 NA Intergenic Intergenic -135386 ENSMUSG00000077279.1 ENSMUSG00000077279 ENSMUST00000104091 Gm22777 snoRNA Interval_71699 chr17 25514145 25514460 + 0 NA Intergenic Intergenic -4283 ENSMUSG00000117437.1 ENSMUSG00000117437 ENSMUST00000234604 Gm33727 lincRNA Interval_169311 chr9 96324002 96325052 + 0 NA TTS (ENSMUSG00000032411.15) protein_coding-TTS (ENSMUSG00000032411.15) 19054 ENSMUSG00000032412.8 ENSMUSG00000032412 ENSMUST00000187341 Atp1b3 protein_coding Interval_109438 chr3 142394772 142396150 + 0 NA intron (ENSMUSG00000028273.15, intron 1 of 7) protein_coding-intron (ENSMUSG00000028273.15, intron 1 of 12) -91482 ENSMUSG00000028273.15 ENSMUSG00000028273 ENSMUST00000058626 Pdlim5 protein_coding Interval_129562 chr5 120952231 120952514 + 0 NA intron (ENSMUSG00000029608.10, intron 13 of 21) protein_coding-intron (ENSMUSG00000029608.10, intron 13 of 21) 19975 ENSMUSG00000106841.1 ENSMUSG00000106841 ENSMUST00000201506 Gm42656 TEC Interval_43216 chr13 25403295 25403764 + 0 NA Intergenic Intergenic 26598 ENSMUSG00000114427.1 ENSMUSG00000114427 ENSMUST00000223668 F830002E08Rik TEC Interval_24925 chr11 41450320 41450640 + 0 NA Intergenic Intergenic -48257 ENSMUSG00000058809.8 ENSMUSG00000058809 ENSMUST00000119713 Hspd1-ps3 processed_pseudogene Interval_86020 chr19 34976126 34976707 + 0 NA TTS (ENSMUSG00000024795.11) protein_coding-TTS (ENSMUSG00000024795.11) 1269 ENSMUSG00000024795.11 ENSMUSG00000024795 ENSMUST00000225625 Kif20b protein_coding Interval_136300 chr6 52775127 52776249 + 0 NA intron (ENSMUSG00000063568.11, intron 4 of 4) protein_coding-intron (ENSMUSG00000063568.11, intron 4 of 4) -52758 ENSMUSG00000108036.1 ENSMUSG00000108036 ENSMUST00000203787 Gm43967 processed_pseudogene Interval_32806 chr11 110882678 110883068 + 0 NA Intergenic Intergenic -85160 ENSMUSG00000051497.15 ENSMUSG00000051497 ENSMUST00000178798 Kcnj16 protein_coding Interval_34455 chr12 4272582 4272921 + 0 NA intron (ENSMUSG00000020647.10, intron 13 of 18) protein_coding-intron (ENSMUSG00000020647.10, intron 16 of 22) 31618 ENSMUSG00000111916.1 ENSMUSG00000111916 ENSMUST00000220337 4921501I09Rik antisense Interval_131739 chr5 139579338 139579735 + 0 NA Intergenic Intergenic 35638 ENSMUSG00000029546.12 ENSMUSG00000029546 ENSMUST00000174792 Uncx protein_coding Interval_163930 chr9 29035864 29036983 + 0 NA intron (ENSMUSG00000059974.10, intron 2 of 4) protein_coding-intron (ENSMUSG00000059974.10, intron 4 of 7) -22164 ENSMUSG00000059974.10 ENSMUSG00000059974 ENSMUST00000151977 Ntm protein_coding Interval_149406 chr7 98176486 98178738 + 0 NA intron (ENSMUSG00000097749.2, intron 1 of 1) protein_coding-intron (ENSMUSG00000035547.14, intron 1 of 12) 418 ENSMUSG00000097749.2 ENSMUSG00000097749 ENSMUST00000180517 Gm16938 processed_transcript Interval_119220 chr4 136275973 136276881 + 0 NA Intergenic Intergenic -8256 ENSMUSG00000051351.14 ENSMUSG00000051351 ENSMUST00000130658 Zfp46 protein_coding Interval_143808 chr7 16436981 16437541 + 0 NA exon (ENSMUSG00000059273.9, exon 14 of 14) protein_coding-exon (ENSMUSG00000059273.9, exon 14 of 14) -15702 ENSMUSG00000019158.9 ENSMUSG00000019158 ENSMUST00000209536 Tmem160 protein_coding Interval_95956 chr2 118673804 118675097 + 0 NA intron (ENSMUSG00000074923.10, intron 2 of 2) protein_coding-intron (ENSMUSG00000074923.10, intron 2 of 10) 10688 ENSMUSG00000074923.10 ENSMUSG00000074923 ENSMUST00000132577 Pak6 protein_coding Interval_165782 chr9 52878796 52879791 + 0 NA Intergenic Intergenic 115282 ENSMUSG00000110833.1 ENSMUSG00000110833 ENSMUST00000216112 Gm47981 processed_pseudogene Interval_137680 chr6 79024792 79025094 + 0 NA Intergenic Intergenic -7101 ENSMUSG00000108072.1 ENSMUSG00000108072 ENSMUST00000204808 Gm20362 lincRNA Interval_166594 chr9 61162567 61163851 + 0 NA Intergenic Intergenic 24694 ENSMUSG00000110998.1 ENSMUSG00000110998 ENSMUST00000216012 I730028E13Rik lincRNA Interval_141520 chr6 128845401 128846338 + 0 NA exon (ENSMUSG00000108095.1, exon 2 of 2) lincRNA-exon (ENSMUSG00000108095.1, exon 2 of 2) 1090 ENSMUSG00000108095.1 ENSMUSG00000108095 ENSMUST00000203350 Gm44067 lincRNA Interval_13309 chr10 14522926 14523239 + 0 NA promoter-TSS (ENSMUSG00000071532.6) processed_pseudogene-promoter-TSS (ENSMUSG00000071532.6) 4 ENSMUSG00000071532.6 ENSMUSG00000071532 ENSMUST00000096020 Gm10335 processed_pseudogene Interval_137253 chr6 70773882 70774641 + 0 NA promoter-TSS (ENSMUSG00000053604.5) protein_coding-promoter-TSS (ENSMUSG00000053604.5) 17742 ENSMUSG00000053604.5 ENSMUSG00000053604 ENSMUST00000129244 Rpia protein_coding Interval_48859 chr13 104099942 104100614 + 0 NA intron (ENSMUSG00000021710.11, intron 1 of 11) protein_coding-intron (ENSMUSG00000021710.11, intron 1 of 12) -9495 ENSMUSG00000042743.13 ENSMUSG00000042743 ENSMUST00000159574 Sgtb protein_coding Interval_85743 chr19 30234805 30235188 + 0 NA exon (ENSMUSG00000024863.6, exon 4 of 6) protein_coding-exon (ENSMUSG00000024863.6, exon 4 of 6) 2054 ENSMUSG00000024863.6 ENSMUSG00000024863 ENSMUST00000025797 Mbl2 protein_coding Interval_165915 chr9 54608646 54610106 + 0 NA intron (ENSMUSG00000032281.11, intron 12 of 13) protein_coding-intron (ENSMUSG00000032281.11, intron 12 of 13) 23042 ENSMUSG00000032279.11 ENSMUSG00000032279 ENSMUST00000214136 Idh3a protein_coding Interval_168515 chr9 82911918 82912107 + 0 NA intron (ENSMUSG00000032253.13, intron 17 of 24) protein_coding-intron (ENSMUSG00000032253.13, intron 17 of 39) -10899 ENSMUSG00000032253.13 ENSMUSG00000032253 ENSMUST00000190838 Phip protein_coding Interval_71973 chr17 27361478 27362216 + 0 NA exon (ENSMUSG00000116879.1, exon 1 of 2) lincRNA-exon (ENSMUSG00000116879.1, exon 1 of 2) 3750 ENSMUSG00000106215.1 ENSMUSG00000106215 ENSMUST00000200050 Mir7218 miRNA Interval_115629 chr4 101472040 101472456 + 0 NA Intergenic Intergenic -24383 ENSMUSG00000028528.17 ENSMUSG00000028528 ENSMUST00000106933 Dnajc6 protein_coding Interval_43446 chr13 31033284 31033507 + 0 NA Intergenic Intergenic 24218 ENSMUSG00000082014.2 ENSMUSG00000082014 ENSMUST00000120294 Gm11371 processed_pseudogene Interval_146804 chr7 51955414 51956148 + 0 NA intron (ENSMUSG00000030498.15, intron 6 of 6) protein_coding-intron (ENSMUSG00000030498.15, intron 7 of 7) 49917 ENSMUSG00000074093.4 ENSMUSG00000074093 ENSMUST00000207457 Svip protein_coding Interval_154136 chr8 12978111 12979605 + 0 NA intron (ENSMUSG00000031442.21, intron 3 of 27) protein_coding-intron (ENSMUSG00000031442.21, intron 4 of 29) -6829 ENSMUSG00000082682.1 ENSMUSG00000082682 ENSMUST00000121154 Gm15349 processed_pseudogene Interval_161570 chr8 121273005 121274117 + 0 NA intron (ENSMUSG00000097384.1, intron 1 of 1) protein_coding-intron (ENSMUSG00000092329.1, intron 1 of 15) -69959 ENSMUSG00000097097.2 ENSMUSG00000097097 ENSMUST00000212635 5033426O07Rik lincRNA Interval_16125 chr10 60867556 60868900 + 0 NA Intergenic Intergenic -36846 ENSMUSG00000020099.8 ENSMUSG00000020099 ENSMUST00000218637 Unc5b protein_coding Interval_92600 chr2 61183344 61183568 + 0 NA Intergenic Intergenic -41336 ENSMUSG00000083197.1 ENSMUSG00000083197 ENSMUST00000120675 Gm13581 processed_pseudogene Interval_46970 chr13 73822339 73822888 + 0 NA TTS (ENSMUSG00000021567.15) protein_coding-TTS (ENSMUSG00000021567.15) -7319 ENSMUSG00000066714.6 ENSMUSG00000066714 ENSMUST00000139696 Gm8062 processed_pseudogene Interval_140491 chr6 118778148 118778409 + 0 NA intron (ENSMUSG00000051331.16, intron 1 of 44) protein_coding-intron (ENSMUSG00000051331.16, intron 4 of 46) -56622 ENSMUSG00000089115.1 ENSMUSG00000089115 ENSMUST00000158490 Gm25905 snRNA Interval_108931 chr3 133462012 133463252 + 0 NA Intergenic Intergenic 18050 ENSMUSG00000040943.12 ENSMUSG00000040943 ENSMUST00000195913 Tet2 protein_coding Interval_162707 chr9 7931896 7932533 + 0 NA exon (ENSMUSG00000053110.13, exon 9 of 9) protein_coding-exon (ENSMUSG00000053110.13, exon 9 of 9) -33624 ENSMUSG00000092185.1 ENSMUSG00000092185 ENSMUST00000174760 Gm20416 processed_transcript Interval_142739 chr6 145261934 145262255 + 0 NA Intergenic Intergenic -4306 ENSMUSG00000067344.7 ENSMUSG00000067344 ENSMUST00000119876 Rps25-ps1 processed_pseudogene Interval_8009 chr1 135190077 135190273 + 0 NA Intergenic Intergenic -22494 ENSMUSG00000026424.8 ENSMUSG00000026424 ENSMUST00000027682 Gpr37l1 protein_coding Interval_111528 chr4 22491713 22491995 + 0 NA intron (ENSMUSG00000107859.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000107859.1, intron 1 of 2) 1306 ENSMUSG00000107859.1 ENSMUSG00000107859 ENSMUST00000203909 Gm30731 lincRNA Interval_32248 chr11 106487050 106488357 + 0 NA promoter-TSS (ENSMUSG00000020715.9) protein_coding-promoter-TSS (ENSMUSG00000020715.9) 149 ENSMUSG00000020715.9 ENSMUSG00000020715 ENSMUST00000106799 Ern1 protein_coding Interval_163300 chr9 20694258 20695501 + 0 NA intron (ENSMUSG00000032172.8, intron 1 of 5) protein_coding-intron (ENSMUSG00000032172.8, intron 1 of 5) 32058 ENSMUSG00000032172.8 ENSMUSG00000032172 ENSMUST00000215039 Olfm2 protein_coding Interval_67578 chr16 51169398 51169690 + 0 NA Intergenic Intergenic 118414 ENSMUSG00000116706.1 ENSMUSG00000116706 ENSMUST00000231893 Gm32431 lincRNA Interval_141404 chr6 128050044 128050253 + 0 NA intron (ENSMUSG00000030352.15, intron 1 of 7) protein_coding-intron (ENSMUSG00000030352.15, intron 2 of 8) -15143 ENSMUSG00000030352.15 ENSMUSG00000030352 ENSMUST00000127075 Tspan9 protein_coding Interval_5662 chr1 90627936 90629435 + 0 NA Intergenic Intergenic 25209 ENSMUSG00000034432.11 ENSMUSG00000034432 ENSMUST00000186882 Cops8 protein_coding Interval_39453 chr12 87526616 87527642 + 0 NA Intergenic Intergenic 8857 ENSMUSG00000114187.1 ENSMUSG00000114187 ENSMUST00000221512 Gm18626 processed_pseudogene Interval_167399 chr9 68689334 68689628 + 0 NA intron (ENSMUSG00000032238.17, intron 1 of 5) protein_coding-intron (ENSMUSG00000032238.17, intron 1 of 10) 35590 ENSMUSG00000032238.17 ENSMUSG00000032238 ENSMUST00000113624 Rora protein_coding Interval_86236 chr19 38015307 38016208 + 0 NA intron (ENSMUSG00000048612.16, intron 3 of 9) protein_coding-intron (ENSMUSG00000048612.16, intron 3 of 52) 27642 ENSMUSG00000048612.16 ENSMUSG00000048612 ENSMUST00000226084 Myof protein_coding Interval_94559 chr2 92231084 92232763 + 0 NA intron (ENSMUSG00000058318.15, intron 6 of 6) protein_coding-intron (ENSMUSG00000058318.15, intron 4 of 15) -1182 ENSMUSG00000083951.1 ENSMUSG00000083951 ENSMUST00000122371 Gm13786 processed_pseudogene Interval_113742 chr4 57955578 57957397 + 0 NA promoter-TSS (ENSMUSG00000028367.5) protein_coding-promoter-TSS (ENSMUSG00000028367.5) -76 ENSMUSG00000028367.5 ENSMUSG00000028367 ENSMUST00000030051 Txn1 protein_coding Interval_101086 chr2 177501411 177501886 + 0 NA intron (ENSMUSG00000094786.1, intron 1 of 3) protein_coding-intron (ENSMUSG00000094786.1, intron 1 of 3) 3433 ENSMUSG00000094786.1 ENSMUSG00000094786 ENSMUST00000108940 Gm14403 protein_coding Interval_101349 chr2 180692565 180693393 + 0 NA intron (ENSMUSG00000038914.15, intron 1 of 14) protein_coding-intron (ENSMUSG00000038914.15, intron 1 of 15) -5084 ENSMUSG00000064422.1 ENSMUSG00000064422 ENSMUST00000082488 Gm22502 snRNA Interval_68462 chr16 77192523 77193945 + 0 NA Intergenic Intergenic 112326 ENSMUSG00000102289.1 ENSMUSG00000102289 ENSMUST00000194532 Gm31258 TEC Interval_115510 chr4 99603275 99603576 + 0 NA Intergenic Intergenic 13097 ENSMUSG00000083698.1 ENSMUSG00000083698 ENSMUST00000119752 Gm12687 processed_pseudogene Interval_2787 chr1 45035603 45035798 + 0 NA Intergenic Intergenic -110807 ENSMUSG00000101251.1 ENSMUSG00000101251 ENSMUST00000188283 Gm3496 processed_pseudogene Interval_56878 chr14 122731225 122731600 + 0 NA intron (ENSMUSG00000041650.15, intron 2 of 2) protein_coding-intron (ENSMUSG00000041650.15, intron 18 of 23) 45096 ENSMUSG00000115264.1 ENSMUSG00000115264 ENSMUST00000226674 Gm49260 TEC Interval_157681 chr8 72268474 72268868 + 0 NA Intergenic Intergenic 15483 ENSMUSG00000110443.1 ENSMUSG00000110443 ENSMUST00000212069 Gm39197 processed_pseudogene Interval_153057 chr7 141096396 141097185 + 0 NA promoter-TSS (ENSMUSG00000025494.8) protein_coding-promoter-TSS (ENSMUSG00000025494.8) 3782 ENSMUSG00000025494.8 ENSMUSG00000025494 ENSMUST00000209352 Sigirr protein_coding Interval_123490 chr5 32889663 32889944 + 0 NA intron (ENSMUSG00000037426.18, intron 8 of 32) protein_coding-intron (ENSMUSG00000037426.18, intron 8 of 32) -23828 ENSMUSG00000089080.1 ENSMUSG00000089080 ENSMUST00000158455 Gm24003 snRNA Interval_111436 chr4 21647520 21647689 + 0 NA Intergenic Intergenic 21224 ENSMUSG00000083654.1 ENSMUSG00000083654 ENSMUST00000118187 Gm11875 processed_pseudogene Interval_167051 chr9 64904663 64905473 + 0 NA intron (ENSMUSG00000053641.9, intron 24 of 33) protein_coding-intron (ENSMUSG00000053641.9, intron 24 of 33) -7415 ENSMUSG00000053641.9 ENSMUSG00000053641 ENSMUST00000217307 Dennd4a protein_coding Interval_35914 chr12 31895611 31897683 + 0 NA intron (ENSMUSG00000035933.5, intron 1 of 4) protein_coding-intron (ENSMUSG00000035933.5, intron 18 of 22) -29047 ENSMUSG00000035933.5 ENSMUSG00000035933 ENSMUST00000219837 Cog5 protein_coding Interval_56563 chr14 120355220 120356627 + 0 NA intron (ENSMUSG00000022139.17, intron 2 of 2) protein_coding-intron (ENSMUSG00000022139.17, intron 2 of 8) -23318 ENSMUSG00000022139.17 ENSMUSG00000022139 ENSMUST00000227153 Mbnl2 protein_coding Interval_97380 chr2 135625929 135626206 + 0 NA Intergenic Intergenic -22840 ENSMUSG00000084762.1 ENSMUSG00000084762 ENSMUST00000146980 Platr3 lincRNA Interval_149246 chr7 96645551 96645770 + 0 NA intron (ENSMUSG00000048078.16, intron 1 of 4) protein_coding-intron (ENSMUSG00000048078.16, intron 7 of 32) -16591 ENSMUSG00000085792.2 ENSMUSG00000085792 ENSMUST00000155217 Gm15414 antisense Interval_159720 chr8 99249961 99250803 + 0 NA intron (ENSMUSG00000036510.17, intron 3 of 12) protein_coding-intron (ENSMUSG00000036510.17, intron 3 of 12) -102293 ENSMUSG00000086842.2 ENSMUSG00000086842 ENSMUST00000137501 Gm15681 processed_pseudogene Interval_58814 chr15 38253556 38254359 + 0 NA intron (ENSMUSG00000115307.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000115307.1, intron 1 of 2) 1353 ENSMUSG00000115307.1 ENSMUSG00000115307 ENSMUST00000227099 Gm49313 lincRNA Interval_170194 chr9 106112470 106113274 + 0 NA Intergenic Intergenic 9027 ENSMUSG00000099717.1 ENSMUSG00000099717 ENSMUST00000188491 Gm9451 processed_pseudogene Interval_155105 chr8 26596725 26597115 + 0 NA Intergenic Intergenic -17118 ENSMUSG00000110222.1 ENSMUSG00000110222 ENSMUST00000210258 Gm39149 lincRNA Interval_99831 chr2 165181132 165181327 + 0 NA exon (ENSMUSG00000053166.14, exon 2 of 12) protein_coding-exon (ENSMUSG00000053166.14, exon 2 of 12) 230 ENSMUSG00000053166.14 ENSMUSG00000053166 ENSMUST00000138643 Cdh22 protein_coding Interval_155215 chr8 27676980 27679415 + 0 NA Intergenic Intergenic 62380 ENSMUSG00000104743.1 ENSMUSG00000104743 ENSMUST00000104868 Gm44493 miRNA Interval_72206 chr17 28584131 28585150 + 0 NA exon (ENSMUSG00000062252.9, exon 4 of 4) protein_coding-exon (ENSMUSG00000062252.9, exon 4 of 4) 8880 ENSMUSG00000062252.9 ENSMUSG00000062252 ENSMUST00000232974 Lhfpl5 protein_coding Interval_7615 chr1 132520368 132521638 + 0 NA intron (ENSMUSG00000053024.14, intron 15 of 21) protein_coding-intron (ENSMUSG00000053024.14, intron 16 of 22) 14114 ENSMUSG00000048174.2 ENSMUSG00000048174 ENSMUST00000188789 Tmem81 protein_coding Interval_154502 chr8 18730979 18731343 + 0 NA intron (ENSMUSG00000031465.6, intron 1 of 8) protein_coding-intron (ENSMUSG00000031465.6, intron 1 of 8) -31614 ENSMUSG00000031465.6 ENSMUSG00000031465 ENSMUST00000170200 Angpt2 protein_coding Interval_72609 chr17 31017961 31019923 + 0 NA Intergenic Intergenic -38785 ENSMUSG00000024030.7 ENSMUSG00000024030 ENSMUST00000236241 Abcg1 protein_coding Interval_116439 chr4 112089971 112090458 + 0 NA intron (ENSMUSG00000055960.12, intron 2 of 10) protein_coding-intron (ENSMUSG00000055960.12, intron 2 of 10) 8744 ENSMUSG00000055960.12 ENSMUSG00000055960 ENSMUST00000106566 Skint4 protein_coding Interval_27353 chr11 66911805 66913283 + 0 NA intron (ENSMUSG00000048070.4, intron 1 of 1) protein_coding-intron (ENSMUSG00000048070.4, intron 1 of 1) 563 ENSMUSG00000048070.4 ENSMUSG00000048070 ENSMUST00000123434 Pirt protein_coding Interval_39749 chr12 96720819 96721129 + 0 NA Intergenic Intergenic 58660 ENSMUSG00000112040.1 ENSMUSG00000112040 ENSMUST00000218365 Gm47396 lincRNA Interval_27204 chr11 64078857 64080081 + 0 NA promoter-TSS (ENSMUSG00000042148.8) protein_coding-promoter-TSS (ENSMUSG00000042148.8) -1 ENSMUSG00000042148.8 ENSMUSG00000042148 ENSMUST00000125702 Cox10 protein_coding Interval_116230 chr4 108892828 108893331 + 0 NA intron (ENSMUSG00000003411.10, intron 2 of 4) protein_coding-intron (ENSMUSG00000003411.10, intron 1 of 3) 35587 ENSMUSG00000028567.8 ENSMUSG00000028567 ENSMUST00000154017 Txndc12 protein_coding Interval_75852 chr17 71827150 71827587 + 0 NA promoter-TSS (ENSMUSG00000024059.10) protein_coding-promoter-TSS (ENSMUSG00000024059.10) -1139 ENSMUSG00000024059.10 ENSMUSG00000024059 ENSMUST00000230290 Clip4 protein_coding Interval_60189 chr15 67114802 67115060 + 0 NA promoter-TSS (ENSMUSG00000013846.10) protein_coding-promoter-TSS (ENSMUSG00000013846.10) 14092 ENSMUSG00000013846.10 ENSMUSG00000013846 ENSMUST00000230150 St3gal1 protein_coding Interval_74636 chr17 54014167 54014566 + 0 NA Intergenic Intergenic 11994 ENSMUSG00000104810.1 ENSMUSG00000104810 ENSMUST00000198419 Gm5684 processed_pseudogene Interval_72720 chr17 31747505 31747857 + 0 NA Intergenic Intergenic -41845 ENSMUSG00000117355.1 ENSMUSG00000117355 ENSMUST00000234824 Gm49999 lincRNA Interval_18753 chr10 90018986 90020543 + 0 NA intron (ENSMUSG00000058589.14, intron 1 of 1) protein_coding-intron (ENSMUSG00000058589.14, intron 1 of 17) 115053 ENSMUSG00000112140.1 ENSMUSG00000112140 ENSMUST00000217774 Gm5780 processed_pseudogene Interval_115960 chr4 106613676 106615924 + 0 NA intron (ENSMUSG00000054362.9, intron 4 of 10) protein_coding-intron (ENSMUSG00000054362.9, intron 4 of 10) 2438 ENSMUSG00000054362.9 ENSMUSG00000054362 ENSMUST00000106788 Lexm protein_coding Interval_108706 chr3 130573274 130573502 + 0 NA intron (ENSMUSG00000058897.18, intron 29 of 37) protein_coding-intron (ENSMUSG00000058897.18, intron 30 of 37) 11446 ENSMUSG00000105760.1 ENSMUSG00000105760 ENSMUST00000196901 Gm43211 TEC Interval_77453 chr17 88937719 88938809 + 0 NA Intergenic Intergenic -81642 ENSMUSG00000117566.1 ENSMUSG00000117566 ENSMUST00000234561 Gm9407 processed_pseudogene Interval_9742 chr1 161687678 161688156 + 0 NA Intergenic Intergenic -25788 ENSMUSG00000102860.1 ENSMUSG00000102860 ENSMUST00000194337 Gm37638 TEC Interval_117020 chr4 119044793 119044987 + 0 NA Intergenic Intergenic 24221 ENSMUSG00000066060.5 ENSMUSG00000066060 ENSMUST00000128998 Gm12866 lincRNA Interval_168543 chr9 83422517 83423512 + 0 NA TTS (ENSMUSG00000032258.15) protein_coding-TTS (ENSMUSG00000032258.15) -8533 ENSMUSG00000099718.1 ENSMUSG00000099718 ENSMUST00000188217 Gm2087 antisense Interval_159084 chr8 90000791 90002275 + 0 NA Intergenic Intergenic -334229 ENSMUSG00000088883.1 ENSMUSG00000088883 ENSMUST00000158258 Gm24212 snoRNA Interval_108545 chr3 128365501 128365707 + 0 NA Intergenic Intergenic -84513 ENSMUSG00000106119.1 ENSMUSG00000106119 ENSMUST00000197882 Gm43656 processed_pseudogene Interval_78237 chr18 10541398 10542367 + 0 NA exon (ENSMUSG00000042942.18, exon 22 of 33) protein_coding-exon (ENSMUSG00000042942.18, exon 22 of 33) 9524 ENSMUSG00000084693.1 ENSMUSG00000084693 ENSMUST00000122744 Gm24894 snoRNA Interval_6499 chr1 112486199 112487499 + 0 NA Intergenic Intergenic 18938 ENSMUSG00000088691.1 ENSMUSG00000088691 ENSMUST00000158066 Gm22331 snoRNA Interval_142733 chr6 145205187 145205394 + 0 NA promoter-TSS (ENSMUSG00000043541.16) protein_coding-promoter-TSS (ENSMUSG00000043541.16) 5619 ENSMUSG00000043541.16 ENSMUSG00000043541 ENSMUST00000203558 Casc1 protein_coding Interval_169453 chr9 97476497 97478049 + 0 NA intron (ENSMUSG00000032452.12, intron 9 of 16) protein_coding-intron (ENSMUSG00000032452.12, intron 9 of 17) -37646 ENSMUSG00000077208.1 ENSMUSG00000077208 ENSMUST00000104020 Gm25607 snoRNA Interval_166745 chr9 62380232 62382234 + 0 NA Intergenic Intergenic 38769 ENSMUSG00000032249.14 ENSMUSG00000032249 ENSMUST00000145679 Anp32a protein_coding Interval_82595 chr18 75360377 75361451 + 0 NA Intergenic Intergenic 6174 ENSMUSG00000092569.1 ENSMUSG00000092569 ENSMUST00000174338 Gm20544 processed_transcript Interval_99249 chr2 158360873 158362289 + 0 NA promoter-TSS (ENSMUSG00000085385.7) processed_transcript-promoter-TSS (ENSMUSG00000085385.7) -1652 ENSMUSG00000064405.1 ENSMUSG00000064405 ENSMUST00000082471 Gm23925 snoRNA Interval_166890 chr9 63723198 63723451 + 0 NA intron (ENSMUSG00000032402.12, intron 1 of 8) protein_coding-intron (ENSMUSG00000032402.12, intron 1 of 8) -11355 ENSMUSG00000032402.12 ENSMUSG00000032402 ENSMUST00000137065 Smad3 protein_coding Interval_70144 chr17 5780680 5782244 + 0 NA Intergenic Intergenic -18029 ENSMUSG00000096965.7 ENSMUSG00000096965 ENSMUST00000181392 3300005D01Rik lincRNA Interval_118342 chr4 130777322 130777675 + 0 NA intron (ENSMUSG00000028580.15, intron 19 of 19) protein_coding-intron (ENSMUSG00000028580.15, intron 21 of 21) 1757 ENSMUSG00000095119.1 ENSMUSG00000095119 ENSMUST00000083856 Gm23711 snoRNA Interval_59400 chr15 52259254 52259557 + 0 NA exon (ENSMUSG00000115738.1, exon 1 of 1) processed_pseudogene-exon (ENSMUSG00000115738.1, exon 1 of 1) 282 ENSMUSG00000115738.1 ENSMUSG00000115738 ENSMUST00000226174 Gm7543 processed_pseudogene Interval_153531 chr8 3220738 3221826 + 0 NA intron (ENSMUSG00000005534.10, intron 2 of 2) protein_coding-intron (ENSMUSG00000005534.10, intron 2 of 20) -38422 ENSMUSG00000086065.1 ENSMUSG00000086065 ENSMUST00000128662 Gm16180 antisense Interval_42033 chr13 6647037 6649319 + 0 NA intron (ENSMUSG00000021196.14, intron 1 of 15) protein_coding-intron (ENSMUSG00000021196.14, intron 1 of 21) 14716 ENSMUSG00000068324.5 ENSMUSG00000068324 ENSMUST00000089635 Gm10029 processed_pseudogene Interval_114381 chr4 74416787 74417106 + 0 NA Intergenic Intergenic 154137 ENSMUSG00000028397.13 ENSMUSG00000028397 ENSMUST00000150439 Kdm4c protein_coding Interval_159746 chr8 100571225 100571502 + 0 NA Intergenic Intergenic -65156 ENSMUSG00000110014.1 ENSMUSG00000110014 ENSMUST00000211041 Gm5361 processed_pseudogene Interval_164805 chr9 42025157 42025446 + 0 NA intron (ENSMUSG00000049313.8, intron 21 of 47) protein_coding-intron (ENSMUSG00000049313.8, intron 21 of 47) 2686 ENSMUSG00000086360.1 ENSMUSG00000086360 ENSMUST00000143710 Gm16214 antisense Interval_98615 chr2 153583349 153584855 + 0 NA Intergenic Intergenic 48629 ENSMUSG00000056941.17 ENSMUSG00000056941 ENSMUST00000109782 Commd7 protein_coding Interval_9504 chr1 158201355 158203570 + 0 NA Intergenic Intergenic 153767 ENSMUSG00000004031.13 ENSMUSG00000004031 ENSMUST00000192709 Brinp2 protein_coding Interval_57362 chr15 9827349 9828567 + 0 NA Intergenic Intergenic -79120 ENSMUSG00000072663.12 ENSMUSG00000072663 ENSMUST00000159368 Spef2 protein_coding Interval_49604 chr13 113454506 113455172 + 0 NA intron (ENSMUSG00000114790.1, intron 5 of 6) lincRNA-intron (ENSMUSG00000114790.1, intron 5 of 6) 25404 ENSMUSG00000114659.1 ENSMUSG00000114659 ENSMUST00000223591 Gm31191 processed_pseudogene Interval_34634 chr12 8239081 8239303 + 0 NA TTS (ENSMUSG00000037669.15) protein_coding-TTS (ENSMUSG00000037669.15) -30027 ENSMUSG00000112694.1 ENSMUSG00000112694 ENSMUST00000217927 Gm33037 antisense Interval_76639 chr17 83042251 83042819 + 0 NA intron (ENSMUSG00000117399.1, intron 2 of 3) processed_transcript-intron (ENSMUSG00000117399.1, intron 2 of 3) -26370 ENSMUSG00000100154.1 ENSMUSG00000100154 ENSMUST00000187700 Gm29052 lincRNA Interval_170295 chr9 106756746 106758216 + 0 NA intron (ENSMUSG00000040661.6, intron 1 of 21) protein_coding-intron (ENSMUSG00000040661.6, intron 1 of 21) 31695 ENSMUSG00000040661.6 ENSMUSG00000040661 ENSMUST00000191300 Rad54l2 protein_coding Interval_11210 chr1 180195226 180196502 + 0 NA promoter-TSS (ENSMUSG00000026489.13) protein_coding-promoter-TSS (ENSMUSG00000026489.13) -2379 ENSMUSG00000026489.13 ENSMUSG00000026489 ENSMUST00000161746 Coq8a protein_coding Interval_94467 chr2 91424204 91425013 + 0 NA exon (ENSMUSG00000040591.18, exon 2 of 4) protein_coding-exon (ENSMUSG00000040591.18, exon 2 of 4) -17472 ENSMUSG00000080507.2 ENSMUSG00000080507 ENSMUST00000116857 Gm22071 miRNA Interval_7281 chr1 128410064 128410249 + 0 NA intron (ENSMUSG00000026356.15, intron 3 of 15) protein_coding-intron (ENSMUSG00000026356.15, intron 3 of 15) -30669 ENSMUSG00000026356.15 ENSMUSG00000026356 ENSMUST00000064309 Dars protein_coding Interval_2120 chr1 36567915 36568897 + 0 NA intron (ENSMUSG00000046337.17, intron 4 of 5) protein_coding-intron (ENSMUSG00000046337.17, intron 12 of 14) 10705 ENSMUSG00000087589.3 ENSMUSG00000087589 ENSMUST00000149224 D430040D24Rik processed_transcript Interval_10832 chr1 175811649 175812198 + 0 NA intron (ENSMUSG00000026523.14, intron 14 of 15) protein_coding-intron (ENSMUSG00000026523.14, intron 26 of 27) 11409 ENSMUSG00000077794.1 ENSMUSG00000077794 ENSMUST00000104606 Gm25560 snRNA Interval_18653 chr10 88817991 88818306 + 0 NA intron (ENSMUSG00000004356.8, intron 7 of 61) protein_coding-intron (ENSMUSG00000004356.8, intron 7 of 61) 8635 ENSMUSG00000004356.8 ENSMUSG00000004356 ENSMUST00000220439 Utp20 protein_coding Interval_95138 chr2 104197130 104197736 + 0 NA intron (ENSMUSG00000068373.15, intron 15 of 20) protein_coding-intron (ENSMUSG00000068373.15, intron 15 of 20) 30805 ENSMUSG00000089606.1 ENSMUSG00000089606 ENSMUST00000158981 Gm22501 snoRNA Interval_152870 chr7 138930574 138931358 + 0 NA promoter-TSS (ENSMUSG00000110319.1) processed_pseudogene-promoter-TSS (ENSMUSG00000110319.1) -750 ENSMUSG00000110319.1 ENSMUSG00000110319 ENSMUST00000211271 Gm45668 processed_pseudogene Interval_86575 chr19 41803268 41803666 + 0 NA Intergenic Intergenic -1420 ENSMUSG00000025154.15 ENSMUSG00000025154 ENSMUST00000177495 Arhgap19 protein_coding Interval_162523 chr9 3743578 3743855 + 0 NA intron (ENSMUSG00000041624.10, intron 4 of 4) protein_coding-intron (ENSMUSG00000041624.10, intron 4 of 7) 210828 ENSMUSG00000041624.10 ENSMUSG00000041624 ENSMUST00000212705 Gucy1a2 protein_coding Interval_79620 chr18 34045752 34046959 + 0 NA promoter-TSS (ENSMUSG00000118246.1) processed_pseudogene-promoter-TSS (ENSMUSG00000118246.1) -471 ENSMUSG00000118246.1 ENSMUSG00000118246 ENSMUST00000236132 Gm6052 processed_pseudogene Interval_152798 chr7 137750313 137751834 + 0 NA Intergenic Intergenic 16807 ENSMUSG00000110090.1 ENSMUSG00000110090 ENSMUST00000209434 Gm45682 lincRNA Interval_65500 chr16 22834692 22835406 + 0 NA intron (ENSMUSG00000004462.7, intron 2 of 3) protein_coding-intron (ENSMUSG00000004462.7, intron 2 of 7) 22493 ENSMUSG00000004462.7 ENSMUSG00000004462 ENSMUST00000231513 Tbccd1 protein_coding Interval_66797 chr16 37688956 37691092 + 0 NA Intergenic Intergenic 7316 ENSMUSG00000116529.1 ENSMUSG00000116529 ENSMUST00000231714 Gm4600 processed_pseudogene Interval_24440 chr11 33274745 33275208 + 0 NA TTS (ENSMUSG00000098456.1) protein_coding-TTS (ENSMUSG00000098456.1) 1761 ENSMUSG00000098456.1 ENSMUSG00000098456 ENSMUST00000183831 Gm12117 protein_coding Interval_58511 chr15 35342906 35343424 + 0 NA Intergenic Intergenic -14630 ENSMUSG00000115453.1 ENSMUSG00000115453 ENSMUST00000227345 BC048602 lincRNA Interval_106975 chr3 102334403 102335570 + 0 NA intron (ENSMUSG00000105891.4, intron 2 of 4) lincRNA-intron (ENSMUSG00000105891.4, intron 2 of 4) -34176 ENSMUSG00000105966.1 ENSMUSG00000105966 ENSMUST00000199507 Gm43242 lincRNA Interval_64696 chr16 14242493 14243317 + 0 NA intron (ENSMUSG00000018830.10, intron 9 of 41) protein_coding-intron (ENSMUSG00000018830.10, intron 8 of 40) 48460 ENSMUSG00000018830.10 ENSMUSG00000018830 ENSMUST00000230643 Myh11 protein_coding Interval_172896 chrX 52964965 52965190 + 0 NA Intergenic Intergenic -23060 ENSMUSG00000025630.8 ENSMUSG00000025630 ENSMUST00000026723 Hprt protein_coding Interval_35875 chr12 31507348 31509474 + 0 NA Intergenic Intergenic -7666 ENSMUSG00000101007.1 ENSMUSG00000101007 ENSMUST00000191351 Gm29541 TEC Interval_106754 chr3 100475036 100475302 + 0 NA intron (ENSMUSG00000044468.14, intron 1 of 1) protein_coding-intron (ENSMUSG00000044468.14, intron 1 of 1) 14025 ENSMUSG00000044468.14 ENSMUSG00000044468 ENSMUST00000061455 Tent5c protein_coding Interval_155325 chr8 31260382 31260562 + 0 NA exon (ENSMUSG00000046152.16, exon 5 of 5) protein_coding-exon (ENSMUSG00000046152.16, exon 5 of 5) 20342 ENSMUSG00000110133.1 ENSMUSG00000110133 ENSMUST00000209631 Gm8168 processed_pseudogene Interval_141139 chr6 125206320 125206646 + 0 NA Intergenic Intergenic 2208 ENSMUSG00000107995.1 ENSMUSG00000107995 ENSMUST00000205145 Gm44487 processed_pseudogene Interval_113257 chr4 52459483 52460128 + 0 NA intron (ENSMUSG00000028312.19, intron 12 of 24) protein_coding-intron (ENSMUSG00000028312.19, intron 12 of 24) -15633 ENSMUSG00000084380.1 ENSMUSG00000084380 ENSMUST00000117819 Tmc4-ps processed_pseudogene Interval_41008 chr12 110557073 110557363 + 0 NA intron (ENSMUSG00000017843.14, intron 10 of 12) protein_coding-intron (ENSMUSG00000017843.14, intron 8 of 13) -33294 ENSMUSG00000113361.1 ENSMUSG00000113361 ENSMUST00000221143 B930059L03Rik lincRNA Interval_26175 chr11 54902432 54903439 + 0 NA promoter-TSS (ENSMUSG00000018339.11) protein_coding-promoter-TSS (ENSMUSG00000018339.11) 9 ENSMUSG00000018339.11 ENSMUSG00000018339 ENSMUST00000149324 Gpx3 protein_coding Interval_154350 chr8 14911028 14912243 + 0 NA promoter-TSS (ENSMUSG00000071176.10) protein_coding-promoter-TSS (ENSMUSG00000071176.10) 22631 ENSMUSG00000026317.7 ENSMUSG00000026317 ENSMUST00000128839 Cln8 protein_coding Interval_130476 chr5 128145710 128145935 + 0 NA intron (ENSMUSG00000034310.8, intron 2 of 8) protein_coding-intron (ENSMUSG00000034310.8, intron 2 of 8) 95517 ENSMUSG00000104581.1 ENSMUSG00000104581 ENSMUST00000197363 Gm42497 TEC Interval_131617 chr5 138833661 138833974 + 0 NA Intergenic Intergenic 13737 ENSMUSG00000094504.3 ENSMUSG00000094504 ENSMUST00000179205 Gm5294 protein_coding Interval_16520 chr10 63325573 63326004 + 0 NA promoter-TSS (ENSMUSG00000020063.16) protein_coding-promoter-TSS (ENSMUSG00000020063.16) 13244 ENSMUSG00000020063.16 ENSMUSG00000020063 ENSMUST00000131371 Sirt1 protein_coding Interval_85548 chr19 28385002 28385407 + 0 NA intron (ENSMUSG00000052942.13, intron 4 of 10) protein_coding-intron (ENSMUSG00000052942.13, intron 3 of 9) -84779 ENSMUSG00000052942.13 ENSMUSG00000052942 ENSMUST00000161328 Glis3 protein_coding Interval_5537 chr1 89663102 89663411 + 0 NA intron (ENSMUSG00000102009.6, intron 2 of 4) protein_coding-intron (ENSMUSG00000055013.16, intron 6 of 17) 20638 ENSMUSG00000102009.6 ENSMUSG00000102009 ENSMUST00000187011 4933400F21Rik processed_transcript Interval_3168 chr1 54383900 54384716 + 0 NA Intergenic Intergenic 39746 ENSMUSG00000041303.7 ENSMUSG00000041303 ENSMUST00000189906 Gtf3c3 protein_coding Interval_151725 chr7 126271773 126273279 + 0 NA promoter-TSS (ENSMUSG00000042978.11) protein_coding-promoter-TSS (ENSMUSG00000042978.11) 23664 ENSMUSG00000042978.11 ENSMUSG00000042978 ENSMUST00000206541 Sbk1 protein_coding Interval_48832 chr13 103806348 103807577 + 0 NA Intergenic Intergenic -37614 ENSMUSG00000032621.8 ENSMUSG00000032621 ENSMUST00000211139 Srek1 protein_coding Interval_135925 chr6 48750974 48751810 + 0 NA intron (ENSMUSG00000098715.6, intron 3 of 3) protein_coding-intron (ENSMUSG00000043505.8, intron 2 of 2) -3946 ENSMUSG00000107481.1 ENSMUSG00000107481 ENSMUST00000204490 4833403J16Rik lincRNA Interval_121301 chr4 154837127 154840169 + 0 NA intron (ENSMUSG00000046637.3, intron 1 of 8) protein_coding-intron (ENSMUSG00000046637.3, intron 1 of 8) 1189 ENSMUSG00000046637.3 ENSMUSG00000046637 ENSMUST00000137684 Ttc34 protein_coding Interval_118869 chr4 134178752 134179047 + 0 NA intron (ENSMUSG00000037443.13, intron 1 of 3) protein_coding-intron (ENSMUSG00000037443.13, intron 1 of 13) -11004 ENSMUSG00000098693.1 ENSMUSG00000098693 ENSMUST00000184419 Gm27619 snoRNA Interval_22893 chr11 17164069 17164332 + 0 NA intron (ENSMUSG00000033953.10, intron 1 of 5) protein_coding-intron (ENSMUSG00000033953.10, intron 1 of 5) -17907 ENSMUSG00000078970.5 ENSMUSG00000078970 ENSMUST00000046955 Wdr92 protein_coding Interval_153905 chr8 10945774 10946942 + 0 NA intron (ENSMUSG00000109084.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000109084.1, intron 1 of 1) 1532 ENSMUSG00000109084.1 ENSMUSG00000109084 ENSMUST00000208843 Gm44955 lincRNA Interval_124151 chr5 38687577 38688064 + 0 NA Intergenic Intergenic -2994 ENSMUSG00000046572.10 ENSMUSG00000046572 ENSMUST00000178760 Zfp518b protein_coding Interval_92645 chr2 61867029 61867365 + 0 NA Intergenic Intergenic 64267 ENSMUSG00000035033.15 ENSMUSG00000035033 ENSMUST00000131538 Tbr1 protein_coding Interval_139356 chr6 99358936 99359205 + 0 NA intron (ENSMUSG00000030067.17, intron 2 of 3) protein_coding-intron (ENSMUSG00000030067.17, intron 1 of 18) 29429 ENSMUSG00000093559.1 ENSMUSG00000093559 ENSMUST00000177278 Gm20705 sense_intronic Interval_87912 chr19 57066267 57067792 + 0 NA intron (ENSMUSG00000025085.16, intron 10 of 20) protein_coding-intron (ENSMUSG00000025085.16, intron 12 of 25) -129791 ENSMUSG00000025083.18 ENSMUSG00000025083 ENSMUST00000132851 Afap1l2 protein_coding Interval_94936 chr2 102003024 102003805 + 0 NA intron (ENSMUSG00000048058.17, intron 4 of 5) protein_coding-intron (ENSMUSG00000048058.17, intron 4 of 5) -36215 ENSMUSG00000085417.1 ENSMUSG00000085417 ENSMUST00000123891 Gm13919 antisense Interval_127311 chr5 102554586 102554795 + 0 NA intron (ENSMUSG00000057315.14, intron 2 of 2) protein_coding-intron (ENSMUSG00000057315.14, intron 1 of 8) -74694 ENSMUSG00000106586.1 ENSMUSG00000106586 ENSMUST00000200080 1700013M08Rik antisense Interval_105880 chr3 89885651 89886623 + 0 NA intron (ENSMUSG00000027947.11, intron 5 of 9) protein_coding-intron (ENSMUSG00000027947.11, intron 5 of 9) -26779 ENSMUSG00000105941.1 ENSMUSG00000105941 ENSMUST00000198429 Gm42809 antisense Interval_157312 chr8 69208622 69209469 + 0 NA promoter-TSS (ENSMUSG00000059897.5) protein_coding-promoter-TSS (ENSMUSG00000059897.5) 7 ENSMUSG00000059897.5 ENSMUSG00000059897 ENSMUST00000110216 Zfp930 protein_coding Interval_103250 chr3 37515482 37515934 + 0 NA intron (ENSMUSG00000027722.14, intron 1 of 2) protein_coding-intron (ENSMUSG00000027722.14, intron 14 of 15) 22520 ENSMUSG00000027722.14 ENSMUSG00000027722 ENSMUST00000132958 Spata5 protein_coding Interval_74989 chr17 59012489 59014103 + 0 NA promoter-TSS (ENSMUSG00000024228.12) protein_coding-promoter-TSS (ENSMUSG00000024228.12) -28 ENSMUSG00000024228.12 ENSMUSG00000024228 ENSMUST00000174122 Nudt12 protein_coding Interval_1962 chr1 35022473 35022685 + 0 NA Intergenic Intergenic 36923 ENSMUSG00000103997.1 ENSMUSG00000103997 ENSMUST00000192315 Gm38027 processed_pseudogene Interval_11869 chr1 186582483 186583006 + 0 NA Intergenic Intergenic -24063 ENSMUSG00000103690.1 ENSMUSG00000103690 ENSMUST00000195454 A730004F24Rik lincRNA Interval_169918 chr9 102947908 102949575 + 0 NA Intergenic Intergenic -43154 ENSMUSG00000084539.1 ENSMUSG00000084539 ENSMUST00000122590 Gm25842 misc_RNA Interval_115859 chr4 105275609 105277168 + 0 NA Intergenic Intergenic 98558 ENSMUSG00000081819.1 ENSMUSG00000081819 ENSMUST00000118507 Gm12722 processed_pseudogene Interval_143486 chr7 7373718 7375059 + 0 NA exon (ENSMUSG00000109654.1, exon 1 of 5) transcribed_unprocessed_pseudogene-exon (ENSMUSG00000109654.1, exon 1 of 5) 185 ENSMUSG00000110139.1 ENSMUSG00000110139 ENSMUST00000210877 Gm45783 protein_coding Interval_39757 chr12 97383407 97384181 + 0 NA Intergenic Intergenic -12681 ENSMUSG00000088448.1 ENSMUSG00000088448 ENSMUST00000157823 Gm23558 rRNA Interval_37635 chr12 70675806 70676322 + 0 NA TTS (ENSMUSG00000114159.1) lincRNA-TTS (ENSMUSG00000114159.1) 1941 ENSMUSG00000114159.1 ENSMUSG00000114159 ENSMUST00000220699 Gm48866 lincRNA Interval_52933 chr14 52114079 52115277 + 0 NA promoter-TSS (ENSMUSG00000057132.16) protein_coding-promoter-TSS (ENSMUSG00000057132.16) -10685 ENSMUSG00000060373.15 ENSMUSG00000060373 ENSMUST00000228786 Hnrnpc protein_coding Interval_30530 chr11 94957605 94958924 + 0 NA promoter-TSS (ENSMUSG00000089404.1) misc_RNA-promoter-TSS (ENSMUSG00000089404.1) -514 ENSMUSG00000089404.1 ENSMUSG00000089404 ENSMUST00000158779 Gm24877 misc_RNA Interval_165989 chr9 55232471 55233457 + 0 NA intron (ENSMUSG00000032311.17, intron 5 of 7) protein_coding-intron (ENSMUSG00000032311.17, intron 4 of 6) 23978 ENSMUSG00000032309.15 ENSMUSG00000032309 ENSMUST00000133795 Fbxo22 protein_coding Interval_57175 chr15 7149986 7150283 + 0 NA intron (ENSMUSG00000054263.12, intron 1 of 15) protein_coding-intron (ENSMUSG00000054263.12, intron 1 of 19) 59520 ENSMUSG00000054263.12 ENSMUSG00000054263 ENSMUST00000171588 Lifr protein_coding Interval_4154 chr1 70910733 70911450 + 0 NA Intergenic Intergenic 128939 ENSMUSG00000089965.1 ENSMUSG00000089965 ENSMUST00000159588 Gm16236 processed_pseudogene Interval_162184 chr8 125760678 125760990 + 0 NA exon (ENSMUSG00000060212.13, exon 31 of 34) protein_coding-exon (ENSMUSG00000060212.13, exon 31 of 34) 24999 ENSMUSG00000031851.14 ENSMUSG00000031851 ENSMUST00000152189 Ntpcr protein_coding Interval_125278 chr5 65901059 65901411 + 0 NA Intergenic Intergenic -10389 ENSMUSG00000107254.1 ENSMUSG00000107254 ENSMUST00000201871 Gm43769 TEC Interval_139769 chr6 108540725 108541025 + 0 NA intron (ENSMUSG00000030102.11, intron 60 of 61) protein_coding-intron (ENSMUSG00000030102.11, intron 60 of 61) -15188 ENSMUSG00000107458.1 ENSMUSG00000107458 ENSMUST00000203360 Gm44040 antisense Interval_173020 chrX 64181202 64181605 + 0 NA Intergenic Intergenic 7055 ENSMUSG00000031179.14 ENSMUSG00000031179 ENSMUST00000151996 3830417A13Rik protein_coding Interval_3375 chr1 57564382 57565582 + 0 NA promoter-TSS (ENSMUSG00000101151.1) processed_pseudogene-promoter-TSS (ENSMUSG00000101151.1) -931 ENSMUSG00000101151.1 ENSMUSG00000101151 ENSMUST00000186851 Gm17929 processed_pseudogene Interval_4962 chr1 82987243 82989145 + 0 NA Intergenic Intergenic -12354 ENSMUSG00000113097.1 ENSMUSG00000113097 ENSMUST00000223439 Gm47959 protein_coding Interval_84027 chr19 6818967 6819650 + 0 NA Intergenic Intergenic 10430 ENSMUSG00000118181.1 ENSMUSG00000118181 ENSMUST00000235920 CAAA01066123.1 processed_transcript Interval_41357 chr12 113045104 113045540 + 0 NA intron (ENSMUSG00000021143.10, intron 2 of 22) protein_coding-intron (ENSMUSG00000021143.10, intron 2 of 23) 18116 ENSMUSG00000104729.1 ENSMUSG00000104729 ENSMUST00000197963 Gm44471 miRNA Interval_71843 chr17 26464015 26465289 + 0 NA promoter-TSS (ENSMUSG00000118232.1) lincRNA-promoter-TSS (ENSMUSG00000118232.1) -495 ENSMUSG00000118232.1 ENSMUSG00000118232 ENSMUST00000236943 Gm50269 lincRNA Interval_146125 chr7 44186756 44187035 + 0 NA Intergenic Intergenic -1341 ENSMUSG00000063713.7 ENSMUSG00000063713 ENSMUST00000073713 Klk1b24 protein_coding Interval_86834 chr19 44247728 44248922 + 0 NA Intergenic Intergenic -1755 ENSMUSG00000117900.1 ENSMUSG00000117900 ENSMUST00000236516 Gm50323 antisense Interval_20194 chr10 115586374 115588403 + 0 NA exon (ENSMUSG00000020140.15, exon 1 of 18) protein_coding-exon (ENSMUSG00000020140.15, exon 1 of 18) 105 ENSMUSG00000020140.15 ENSMUSG00000020140 ENSMUST00000129309 Lgr5 protein_coding Interval_121367 chr4 155292833 155293135 + 0 NA intron (ENSMUSG00000029053.16, intron 4 of 4) protein_coding-intron (ENSMUSG00000029053.16, intron 7 of 17) 43018 ENSMUSG00000073684.13 ENSMUSG00000073684 ENSMUST00000156404 Faap20 protein_coding Interval_73954 chr17 45649916 45650330 + 0 NA intron (ENSMUSG00000058626.16, intron 3 of 21) protein_coding-intron (ENSMUSG00000058626.16, intron 3 of 21) 9174 ENSMUSG00000058626.16 ENSMUSG00000058626 ENSMUST00000151350 Capn11 protein_coding Interval_144197 chr7 19910565 19911391 + 0 NA promoter-TSS (ENSMUSG00000040511.14) protein_coding-promoter-TSS (ENSMUSG00000040511.14) -847 ENSMUSG00000089886.1 ENSMUSG00000089886 ENSMUST00000162324 Gm16184 processed_pseudogene Interval_150252 chr7 108999870 109001031 + 0 NA intron (ENSMUSG00000031028.14, intron 1 of 3) protein_coding-intron (ENSMUSG00000031028.14, intron 1 of 3) 49793 ENSMUSG00000031028.14 ENSMUSG00000031028 ENSMUST00000147943 Tub protein_coding Interval_111637 chr4 24965884 24967143 + 0 NA promoter-TSS (ENSMUSG00000085885.1) processed_transcript-promoter-TSS (ENSMUSG00000085885.1) -4 ENSMUSG00000085885.1 ENSMUSG00000085885 ENSMUST00000124792 Gm11906 processed_transcript Interval_115375 chr4 98330599 98331398 + 0 NA intron (ENSMUSG00000046683.16, intron 2 of 2) antisense-intron (ENSMUSG00000046683.16, intron 2 of 2) 9550 ENSMUSG00000046683.16 ENSMUSG00000046683 ENSMUST00000180374 0610025J13Rik antisense Interval_38966 chr12 84172871 84174166 + 0 NA exon (ENSMUSG00000042507.15, exon 2 of 13) protein_coding-exon (ENSMUSG00000042507.15, exon 2 of 13) 14288 ENSMUSG00000113776.1 ENSMUSG00000113776 ENSMUST00000220651 Gm19327 TEC Interval_24783 chr11 37497767 37498299 + 0 NA Intergenic Intergenic -160956 ENSMUSG00000087388.1 ENSMUSG00000087388 ENSMUST00000131013 Gm12128 lincRNA Interval_12852 chr10 6586154 6587044 + 0 NA Intergenic Intergenic -59725 ENSMUSG00000111902.1 ENSMUSG00000111902 ENSMUST00000219804 Gm4921 processed_pseudogene Interval_101658 chr3 8653635 8653967 + 0 NA Intergenic Intergenic 13163 ENSMUSG00000040289.8 ENSMUSG00000040289 ENSMUST00000194299 Hey1 protein_coding Interval_9615 chr1 160263707 160264246 + 0 NA promoter-TSS (ENSMUSG00000104302.1) antisense-promoter-TSS (ENSMUSG00000104302.1) -348 ENSMUSG00000104302.1 ENSMUSG00000104302 ENSMUST00000194105 Gm36975 antisense Interval_12936 chr10 8297090 8298026 + 0 NA intron (ENSMUSG00000047712.8, intron 2 of 6) protein_coding-intron (ENSMUSG00000047712.8, intron 5 of 7) 4684 ENSMUSG00000047712.8 ENSMUSG00000047712 ENSMUST00000061601 Ust protein_coding Interval_106275 chr3 95066206 95067119 + 0 NA intron (ENSMUSG00000028126.16, intron 9 of 14) protein_coding-intron (ENSMUSG00000028126.16, intron 9 of 14) 16570 ENSMUSG00000028126.16 ENSMUSG00000028126 ENSMUST00000107229 Pip5k1a protein_coding Interval_70918 chr17 15928131 15929321 + 0 NA Intergenic Intergenic 83446 ENSMUSG00000116545.1 ENSMUSG00000116545 ENSMUST00000231929 Eif3s6-ps3 processed_pseudogene Interval_38225 chr12 76473857 76476337 + 0 NA Intergenic Intergenic -17258 ENSMUSG00000112167.1 ENSMUSG00000112167 ENSMUST00000218608 Gm47053 processed_pseudogene Interval_142663 chr6 144901644 144903296 + 0 NA Intergenic Intergenic -98838 ENSMUSG00000087850.1 ENSMUSG00000087850 ENSMUST00000157225 Gm22792 snoRNA Interval_98052 chr2 147244317 147244735 + 0 NA intron (ENSMUSG00000086509.2, intron 1 of 5) antisense-intron (ENSMUSG00000086509.2, intron 1 of 5) 6259 ENSMUSG00000089316.1 ENSMUSG00000089316 ENSMUST00000158691 Gm22261 misc_RNA Interval_20830 chr10 121370700 121370990 + 0 NA intron (ENSMUSG00000034707.7, intron 2 of 4) protein_coding-intron (ENSMUSG00000034707.7, intron 1 of 13) -6229 ENSMUSG00000034707.7 ENSMUSG00000034707 ENSMUST00000219216 Gns protein_coding Interval_171721 chr9 120496896 120497657 + 0 NA Intergenic Intergenic -4729 ENSMUSG00000111828.1 ENSMUSG00000111828 ENSMUST00000213677 D830035M03Rik antisense Interval_76637 chr17 83031592 83032353 + 0 NA Intergenic Intergenic -36933 ENSMUSG00000100154.1 ENSMUSG00000100154 ENSMUST00000187700 Gm29052 lincRNA Interval_42875 chr13 20903827 20904784 + 0 NA intron (ENSMUSG00000021322.8, intron 5 of 20) protein_coding-intron (ENSMUSG00000021322.8, intron 5 of 20) 59551 ENSMUSG00000088989.1 ENSMUSG00000088989 ENSMUST00000158364 Gm25605 snRNA Interval_142829 chr6 146260767 146261352 + 0 NA intron (ENSMUSG00000030287.15, intron 36 of 55) protein_coding-intron (ENSMUSG00000030287.15, intron 37 of 56) 9921 ENSMUSG00000107801.1 ENSMUSG00000107801 ENSMUST00000203251 Gm44086 TEC Interval_25427 chr11 48159264 48159830 + 0 NA Intergenic Intergenic 130766 ENSMUSG00000081952.1 ENSMUSG00000081952 ENSMUST00000120545 Gm12178 processed_pseudogene Interval_84909 chr19 18707002 18707300 + 0 NA TTS (ENSMUSG00000024726.10) protein_coding-TTS (ENSMUSG00000024726.10) -6042 ENSMUSG00000047044.7 ENSMUSG00000047044 ENSMUST00000055792 D030056L22Rik protein_coding Interval_145465 chr7 34967559 34969718 + 0 NA promoter-TSS (ENSMUSG00000063931.14) protein_coding-promoter-TSS (ENSMUSG00000063931.14) -872 ENSMUSG00000063931.14 ENSMUSG00000063931 ENSMUST00000160459 Pepd protein_coding Interval_29373 chr11 83502131 83503013 + 0 NA intron (ENSMUSG00000020680.15, intron 5 of 10) protein_coding-intron (ENSMUSG00000020680.15, intron 11 of 15) -18584 ENSMUSG00000065307.1 ENSMUSG00000065307 ENSMUST00000083373 Gm23247 snRNA Interval_25077 chr11 43704591 43706015 + 0 NA promoter-TSS (ENSMUSG00000044950.7) protein_coding-promoter-TSS (ENSMUSG00000044950.7) 22755 ENSMUSG00000044950.7 ENSMUSG00000044950 ENSMUST00000130467 Pwwp2a protein_coding Interval_71425 chr17 23673280 23674202 + 0 NA promoter-TSS (ENSMUSG00000041319.14) protein_coding-promoter-TSS (ENSMUSG00000041319.14) 145 ENSMUSG00000023904.10 ENSMUSG00000023904 ENSMUST00000179928 Hcfc1r1 protein_coding Interval_48465 chr13 99217767 99219141 + 0 NA intron (ENSMUSG00000050919.9, intron 1 of 4) protein_coding-intron (ENSMUSG00000050919.9, intron 1 of 4) 33631 ENSMUSG00000050919.9 ENSMUSG00000050919 ENSMUST00000056558 Zfp366 protein_coding Interval_113392 chr4 54220478 54220690 + 0 NA Intergenic Intergenic 15292 ENSMUSG00000083624.1 ENSMUSG00000083624 ENSMUST00000117623 Gm12469 processed_pseudogene Interval_47698 chr13 91392408 91392617 + 0 NA Intergenic Intergenic -4427 ENSMUSG00000097182.2 ENSMUSG00000097182 ENSMUST00000181054 A830009L08Rik lincRNA Interval_174185 chrX 138913499 138914992 + 0 NA promoter-TSS (ENSMUSG00000052854.15) protein_coding-promoter-TSS (ENSMUSG00000052854.15) -68473 ENSMUSG00000052854.15 ENSMUSG00000052854 ENSMUST00000155201 Nrk protein_coding Interval_91476 chr2 39136899 39137271 + 0 NA intron (ENSMUSG00000035236.17, intron 2 of 17) protein_coding-intron (ENSMUSG00000035236.17, intron 2 of 17) -16879 ENSMUSG00000107833.1 ENSMUSG00000107833 ENSMUST00000204611 Gm18791 processed_pseudogene Interval_16011 chr10 60105456 60107768 + 0 NA exon (ENSMUSG00000058297.16, exon 1 of 11) protein_coding-exon (ENSMUSG00000058297.16, exon 1 of 11) 144 ENSMUSG00000058297.16 ENSMUSG00000058297 ENSMUST00000165024 Spock2 protein_coding Interval_60349 chr15 73110080 73110466 + 0 NA intron (ENSMUSG00000036698.11, intron 2 of 3) protein_coding-intron (ENSMUSG00000036698.11, intron 16 of 18) 19861 ENSMUSG00000068391.8 ENSMUSG00000068391 ENSMUST00000137698 Chrac1 protein_coding Interval_42979 chr13 22032567 22032946 + 0 NA TTS (ENSMUSG00000043145.7) processed_transcript-TTS (ENSMUSG00000043145.7) -2408 ENSMUSG00000104608.1 ENSMUSG00000104608 ENSMUST00000197533 Gm44390 miRNA Interval_67689 chr16 55969103 55969385 + 0 NA promoter-TSS (ENSMUSG00000098274.7) protein_coding-promoter-TSS (ENSMUSG00000098274.7) 2823 ENSMUSG00000098274.7 ENSMUSG00000098274 ENSMUST00000128581 Rpl24 protein_coding Interval_129091 chr5 117356293 117359036 + 0 NA intron (ENSMUSG00000029364.15, intron 1 of 1) protein_coding-intron (ENSMUSG00000029364.15, intron 1 of 8) -8321 ENSMUSG00000081274.2 ENSMUSG00000081274 ENSMUST00000122416 Gm15727 processed_pseudogene Interval_112953 chr4 46388886 46390922 + 0 NA promoter-TSS (ENSMUSG00000028331.12) protein_coding-promoter-TSS (ENSMUSG00000028331.12) -486 ENSMUSG00000028331.12 ENSMUSG00000028331 ENSMUST00000030015 Trmo protein_coding Interval_13845 chr10 23796672 23798108 + 0 NA intron (ENSMUSG00000037455.16, intron 1 of 4) protein_coding-intron (ENSMUSG00000037455.16, intron 1 of 13) 404 ENSMUSG00000037455.16 ENSMUSG00000037455 ENSMUST00000143931 Slc18b1 protein_coding Interval_169437 chr9 97297505 97297972 + 0 NA Intergenic Intergenic 8552 ENSMUSG00000104167.1 ENSMUSG00000104167 ENSMUST00000192385 A030012G06Rik TEC Interval_18814 chr10 91100056 91100277 + 0 NA promoter-TSS (ENSMUSG00000019975.12) protein_coding-promoter-TSS (ENSMUSG00000019975.12) -264 ENSMUSG00000019975.12 ENSMUSG00000019975 ENSMUST00000211056 Ikbip protein_coding Interval_171396 chr9 117379392 117380883 + 0 NA intron (ENSMUSG00000039607.17, intron 1 of 14) protein_coding-intron (ENSMUSG00000039607.17, intron 1 of 14) -22842 ENSMUSG00000092504.1 ENSMUSG00000092504 ENSMUST00000173358 Gm20396 processed_pseudogene Interval_173328 chrX 79819537 79819793 + 0 NA Intergenic Intergenic 83901 ENSMUSG00000082372.1 ENSMUSG00000082372 ENSMUST00000122221 Gm4772 processed_pseudogene Interval_69497 chr16 93876594 93878367 + 0 NA Intergenic Intergenic -11254 ENSMUSG00000116890.1 ENSMUSG00000116890 ENSMUST00000232065 Gm49617 sense_intronic Interval_163424 chr9 21383535 21383818 + 0 NA promoter-TSS (ENSMUSG00000032178.14) protein_coding-promoter-TSS (ENSMUSG00000032178.14) -4876 ENSMUSG00000032178.14 ENSMUSG00000032178 ENSMUST00000214200 Ilf3 protein_coding Interval_13721 chr10 21395156 21395418 + 0 NA intron (ENSMUSG00000037542.13, intron 6 of 6) protein_coding-intron (ENSMUSG00000037542.13, intron 6 of 6) 15286 ENSMUSG00000112405.1 ENSMUSG00000112405 ENSMUST00000219474 Fkbp1a-ps2 processed_pseudogene Interval_67729 chr16 56512620 56513053 + 0 NA intron (ENSMUSG00000035258.15, intron 1 of 35) protein_coding-intron (ENSMUSG00000035258.15, intron 1 of 39) 34936 ENSMUSG00000035258.15 ENSMUSG00000035258 ENSMUST00000096012 Abi3bp protein_coding Interval_153288 chr7 143342418 143343375 + 0 NA intron (ENSMUSG00000101360.2, intron 1 of 3) protein_coding-intron (ENSMUSG00000009545.14, intron 11 of 15) -1541 ENSMUSG00000103791.1 ENSMUSG00000103791 ENSMUST00000192896 Gm38095 TEC Interval_141461 chr6 128411263 128411499 + 0 NA promoter-TSS (ENSMUSG00000001518.12) protein_coding-promoter-TSS (ENSMUSG00000001518.12) 11088 ENSMUSG00000001520.12 ENSMUSG00000001520 ENSMUST00000204836 Nrip2 protein_coding Interval_1570 chr1 26739431 26741059 + 0 NA Intergenic Intergenic -52785 ENSMUSG00000073722.3 ENSMUSG00000073722 ENSMUST00000097801 4931408C20Rik protein_coding Interval_94805 chr2 94489524 94490549 + 0 NA Intergenic Intergenic 48033 ENSMUSG00000106196.1 ENSMUSG00000106196 ENSMUST00000116740 Gm44461 miRNA Interval_44766 chr13 48426498 48427293 + 0 NA Intergenic Intergenic -18383 ENSMUSG00000114695.1 ENSMUSG00000114695 ENSMUST00000225569 Gm48648 lincRNA Interval_84505 chr19 11940795 11941016 + 0 NA intron (ENSMUSG00000046139.8, intron 17 of 19) protein_coding-intron (ENSMUSG00000046139.8, intron 16 of 18) -7277 ENSMUSG00000077227.1 ENSMUSG00000077227 ENSMUST00000104039 Gm22272 snoRNA Interval_15374 chr10 45161566 45162042 + 0 NA exon (ENSMUSG00000019849.11, exon 15 of 15) protein_coding-exon (ENSMUSG00000019849.11, exon 15 of 15) -16294 ENSMUSG00000019848.14 ENSMUSG00000019848 ENSMUST00000161803 Popdc3 protein_coding Interval_75364 chr17 66140319 66140816 + 0 NA TTS (ENSMUSG00000035842.10) protein_coding-TTS (ENSMUSG00000035842.10) -3142 ENSMUSG00000035842.10 ENSMUSG00000035842 ENSMUST00000226095 Ddx11 protein_coding Interval_131200 chr5 135777911 135779064 + 0 NA promoter-TSS (ENSMUSG00000019179.10) protein_coding-promoter-TSS (ENSMUSG00000019179.10) -118 ENSMUSG00000019178.17 ENSMUSG00000019178 ENSMUST00000178796 Styxl1 protein_coding Interval_13735 chr10 21555035 21555740 + 0 NA Intergenic Intergenic -60933 ENSMUSG00000050844.5 ENSMUSG00000050844 ENSMUST00000186635 1700020N01Rik protein_coding Interval_160340 chr8 108584628 108584887 + 0 NA promoter-TSS (ENSMUSG00000110613.1) lincRNA-promoter-TSS (ENSMUSG00000110613.1) -162 ENSMUSG00000110613.1 ENSMUSG00000110613 ENSMUST00000211953 Lncbate1 lincRNA Interval_102585 chr3 27989208 27989505 + 0 NA intron (ENSMUSG00000027695.16, intron 1 of 26) protein_coding-intron (ENSMUSG00000027695.16, intron 1 of 25) -89834 ENSMUSG00000027695.16 ENSMUSG00000027695 ENSMUST00000126594 Pld1 protein_coding Interval_13390 chr10 17705266 17706550 + 0 NA Intergenic Intergenic -17325 ENSMUSG00000039910.10 ENSMUSG00000039910 ENSMUST00000218370 Cited2 protein_coding Interval_161401 chr8 120255568 120257925 + 0 NA intron (ENSMUSG00000031822.20, intron 1 of 2) protein_coding-intron (ENSMUSG00000092329.1, intron 1 of 15) -28516 ENSMUSG00000097960.1 ENSMUSG00000097960 ENSMUST00000183235 A330074K22Rik lincRNA Interval_59055 chr15 42650461 42651830 + 0 NA intron (ENSMUSG00000022309.9, intron 1 of 1) protein_coding-intron (ENSMUSG00000022309.9, intron 1 of 8) -25180 ENSMUSG00000097805.2 ENSMUSG00000097805 ENSMUST00000228544 Gm17473 antisense Interval_152181 chr7 130476112 130476788 + 0 NA intron (ENSMUSG00000030850.17, intron 2 of 5) protein_coding-intron (ENSMUSG00000030850.17, intron 8 of 11) -18777 ENSMUSG00000108940.1 ENSMUSG00000108940 ENSMUST00000207954 Gm45719 TEC Interval_10029 chr1 165209180 165209663 + 0 NA Intergenic Intergenic -15104 ENSMUSG00000040848.11 ENSMUSG00000040848 ENSMUST00000192565 Sft2d2 protein_coding Interval_20779 chr10 120912120 120913072 + 0 NA Intergenic Intergenic 13439 ENSMUSG00000086522.1 ENSMUSG00000086522 ENSMUST00000145987 Gm4473 bidirectional_promoter_lncRNA Interval_129205 chr5 118174517 118175507 + 0 NA intron (ENSMUSG00000046607.6, intron 1 of 1) protein_coding-intron (ENSMUSG00000046607.6, intron 1 of 1) 10364 ENSMUSG00000046607.6 ENSMUSG00000046607 ENSMUST00000054836 Hrk protein_coding Interval_68231 chr16 70008697 70009307 + 0 NA Intergenic Intergenic 105715 ENSMUSG00000116588.1 ENSMUSG00000116588 ENSMUST00000231343 Gm49655 lincRNA Interval_54386 chr14 68145556 68146562 + 0 NA Intergenic Intergenic 21015 ENSMUSG00000087772.1 ENSMUSG00000087772 ENSMUST00000157147 Gm22319 snoRNA Interval_9034 chr1 153206972 153207665 + 0 NA Intergenic Intergenic 32008 ENSMUSG00000026478.14 ENSMUSG00000026478 ENSMUST00000159251 Lamc1 protein_coding Interval_69891 chr16 97942902 97943162 + 0 NA TTS (ENSMUSG00000046962.16) protein_coding-TTS (ENSMUSG00000046962.16) 19561 ENSMUSG00000046962.16 ENSMUSG00000046962 ENSMUST00000231560 Zbtb21 protein_coding Interval_36500 chr12 46630482 46631251 + 0 NA Intergenic Intergenic 34843 ENSMUSG00000112174.1 ENSMUSG00000112174 ENSMUST00000217951 Gm48535 lincRNA Interval_38860 chr12 83457611 83458400 + 0 NA intron (ENSMUSG00000021221.15, intron 1 of 10) protein_coding-intron (ENSMUSG00000021221.15, intron 1 of 8) 29711 ENSMUSG00000021221.15 ENSMUSG00000021221 ENSMUST00000177801 Dpf3 protein_coding Interval_11314 chr1 180902996 180904811 + 0 NA promoter-TSS (ENSMUSG00000026520.8) protein_coding-promoter-TSS (ENSMUSG00000026520.8) -2012 ENSMUSG00000026520.8 ENSMUSG00000026520 ENSMUST00000195270 Pycr2 protein_coding Interval_169336 chr9 96501139 96501352 + 0 NA intron (ENSMUSG00000099564.2, intron 7 of 10) protein_coding-intron (ENSMUSG00000099564.2, intron 7 of 10) -6032 ENSMUSG00000099049.1 ENSMUSG00000099049 ENSMUST00000183341 Gm27289 rRNA Interval_76414 chr17 80018861 80019657 + 0 NA Intergenic Intergenic -14255 ENSMUSG00000088183.1 ENSMUSG00000088183 ENSMUST00000157558 Gm22215 snRNA Interval_152477 chr7 133258443 133258978 + 0 NA Intergenic Intergenic 74491 ENSMUSG00000109619.1 ENSMUSG00000109619 ENSMUST00000209700 Gm45672 lincRNA Interval_69627 chr16 94713533 94714911 + 0 NA promoter-TSS (ENSMUSG00000116822.1) TEC-promoter-TSS (ENSMUSG00000116822.1) -319 ENSMUSG00000116822.1 ENSMUSG00000116822 ENSMUST00000232250 Gm41504 TEC Interval_24830 chr11 40043265 40043481 + 0 NA intron (ENSMUSG00000085301.1, intron 2 of 7) lincRNA-intron (ENSMUSG00000085301.1, intron 2 of 7) 35179 ENSMUSG00000085301.1 ENSMUSG00000085301 ENSMUST00000130945 Gm12132 lincRNA Interval_160567 chr8 110754536 110757045 + 0 NA exon (ENSMUSG00000090039.1, exon 2 of 3) antisense-exon (ENSMUSG00000090039.1, exon 2 of 3) 798 ENSMUSG00000090039.1 ENSMUSG00000090039 ENSMUST00000162828 Gm15894 antisense Interval_98311 chr2 150933171 150934319 + 0 NA TTS (ENSMUSG00000068115.13) protein_coding-TTS (ENSMUSG00000068115.13) 212 ENSMUSG00000082341.1 ENSMUSG00000082341 ENSMUST00000121686 Gm14143 processed_pseudogene Interval_86487 chr19 41016049 41016702 + 0 NA Intergenic Intergenic -13010 ENSMUSG00000025014.13 ENSMUSG00000025014 ENSMUST00000237959 Dntt protein_coding Interval_138984 chr6 94019709 94020513 + 0 NA intron (ENSMUSG00000045095.16, intron 1 of 24) protein_coding-intron (ENSMUSG00000045095.16, intron 1 of 21) -107607 ENSMUSG00000045095.16 ENSMUSG00000045095 ENSMUST00000203034 Magi1 protein_coding Interval_2080 chr1 36283639 36283830 + 0 NA Intergenic Intergenic -9055 ENSMUSG00000047180.8 ENSMUSG00000047180 ENSMUST00000188666 Neurl3 protein_coding Interval_171689 chr9 120171273 120171520 + 0 NA intron (ENSMUSG00000032517.16, intron 3 of 3) protein_coding-intron (ENSMUSG00000032517.16, intron 3 of 3) -7642 ENSMUSG00000111219.1 ENSMUSG00000111219 ENSMUST00000216004 Gm38642 processed_transcript Interval_165960 chr9 54981168 54982200 + 0 NA exon (ENSMUSG00000035594.10, exon 1 of 6) protein_coding-exon (ENSMUSG00000035594.10, exon 1 of 6) 218 ENSMUSG00000035594.10 ENSMUSG00000035594 ENSMUST00000213960 Chrna5 protein_coding Interval_137775 chr6 82319158 82319571 + 0 NA exon (ENSMUSG00000107809.1, exon 1 of 1) TEC-exon (ENSMUSG00000107809.1, exon 1 of 1) 3619 ENSMUSG00000107809.1 ENSMUSG00000107809 ENSMUST00000204556 Gm44209 TEC Interval_154440 chr8 17270889 17271099 + 0 NA intron (ENSMUSG00000060924.15, intron 1 of 10) protein_coding-intron (ENSMUSG00000060924.15, intron 1 of 69) 264287 ENSMUSG00000060924.15 ENSMUSG00000060924 ENSMUST00000122983 Csmd1 protein_coding Interval_62449 chr15 93088968 93089940 + 0 NA exon (ENSMUSG00000115921.1, exon 1 of 1) processed_pseudogene-exon (ENSMUSG00000115921.1, exon 1 of 1) 224 ENSMUSG00000115921.1 ENSMUSG00000115921 ENSMUST00000229620 Gm18685 processed_pseudogene Interval_163210 chr9 18320159 18320470 + 0 NA Intergenic Intergenic -19663 ENSMUSG00000110816.1 ENSMUSG00000110816 ENSMUST00000217524 Gm19178 processed_pseudogene Interval_29186 chr11 81227543 81228009 + 0 NA intron (ENSMUSG00000020704.13, intron 1 of 9) protein_coding-intron (ENSMUSG00000020704.13, intron 1 of 9) 155373 ENSMUSG00000085130.1 ENSMUSG00000085130 ENSMUST00000150536 Gm11417 antisense Interval_13909 chr10 24569092 24569870 + 0 NA intron (ENSMUSG00000087400.8, intron 3 of 3) processed_transcript-intron (ENSMUSG00000087400.8, intron 3 of 3) -1347 ENSMUSG00000081259.2 ENSMUSG00000081259 ENSMUST00000118385 Gm6893 processed_pseudogene Interval_170043 chr9 104018003 104018700 + 0 NA intron (ENSMUSG00000032558.19, intron 9 of 26) protein_coding-intron (ENSMUSG00000032558.19, intron 9 of 26) -16012 ENSMUSG00000111035.1 ENSMUSG00000111035 ENSMUST00000216588 Gm33054 lincRNA Interval_23718 chr11 25269778 25270572 + 0 NA intron (ENSMUSG00000033015.16, intron 1 of 1) lincRNA-intron (ENSMUSG00000033015.16, intron 1 of 1) -31088 ENSMUSG00000086439.1 ENSMUSG00000086439 ENSMUST00000145127 Gm12069 lincRNA Interval_107855 chr3 116327012 116328476 + 0 NA exon (ENSMUSG00000033502.15, exon 9 of 9) protein_coding-exon (ENSMUSG00000033502.15, exon 9 of 9) -22359 ENSMUSG00000106005.1 ENSMUSG00000106005 ENSMUST00000196669 Gm29151 antisense Interval_50456 chr14 13635184 13635405 + 0 NA Intergenic Intergenic -35582 ENSMUSG00000044772.2 ENSMUSG00000044772 ENSMUST00000061045 Sntn protein_coding Interval_92443 chr2 59749117 59750023 + 0 NA intron (ENSMUSG00000035168.16, intron 1 of 15) protein_coding-intron (ENSMUSG00000035168.16, intron 4 of 26) -56498 ENSMUSG00000035168.16 ENSMUSG00000035168 ENSMUST00000147650 Tanc1 protein_coding Interval_63371 chr15 100657500 100658235 + 0 NA intron (ENSMUSG00000098112.8, intron 1 of 9) protein_coding-intron (ENSMUSG00000098112.8, intron 2 of 3) -8638 ENSMUSG00000098527.1 ENSMUSG00000098527 ENSMUST00000183874 Mir6961 miRNA Interval_163972 chr9 30076165 30077526 + 0 NA Intergenic Intergenic -13126 ENSMUSG00000111175.1 ENSMUSG00000111175 ENSMUST00000214849 Gm19640 processed_pseudogene Interval_160814 chr8 112669590 112669998 + 0 NA intron (ENSMUSG00000031772.17, intron 3 of 20) protein_coding-intron (ENSMUSG00000031772.17, intron 3 of 23) 88158 ENSMUSG00000089344.1 ENSMUSG00000089344 ENSMUST00000158719 Gm22664 misc_RNA Interval_159412 chr8 94422501 94423254 + 0 NA TTS (ENSMUSG00000097194.2) lincRNA-TTS (ENSMUSG00000097194.2) 11289 ENSMUSG00000097194.2 ENSMUSG00000097194 ENSMUST00000180445 9330175E14Rik lincRNA Interval_48766 chr13 102914619 102915445 + 0 NA intron (ENSMUSG00000034751.17, intron 3 of 27) protein_coding-intron (ENSMUSG00000034751.17, intron 2 of 27) 152597 ENSMUSG00000090329.1 ENSMUSG00000090329 ENSMUST00000170645 Gm17160 antisense Interval_114411 chr4 75535041 75535802 + 0 NA Intergenic Intergenic 154661 ENSMUSG00000084026.1 ENSMUSG00000084026 ENSMUST00000120554 Gm11259 processed_pseudogene Interval_3892 chr1 64486544 64486786 + 0 NA Intergenic Intergenic -32088 ENSMUSG00000099658.1 ENSMUSG00000099658 ENSMUST00000187877 Gm28980 processed_pseudogene Interval_101877 chr3 10342342 10343106 + 0 NA exon (ENSMUSG00000039795.14, exon 1 of 2) protein_coding-exon (ENSMUSG00000039795.14, exon 1 of 2) -7043 ENSMUSG00000103392.1 ENSMUSG00000103392 ENSMUST00000192603 Gm38303 protein_coding Interval_76595 chr17 82199127 82200573 + 0 NA Intergenic Intergenic 6095 ENSMUSG00000099014.1 ENSMUSG00000099014 ENSMUST00000184153 Gm27359 miRNA Interval_87651 chr19 54008856 54009843 + 0 NA intron (ENSMUSG00000024976.14, intron 2 of 3) protein_coding-intron (ENSMUSG00000024976.14, intron 3 of 8) -7942 ENSMUSG00000117981.1 ENSMUSG00000117981 ENSMUST00000237905 4930484I04Rik antisense Interval_76014 chr17 74363710 74364309 + 0 NA intron (ENSMUSG00000024068.8, intron 4 of 11) protein_coding-intron (ENSMUSG00000024068.8, intron 4 of 16) 24972 ENSMUSG00000024068.8 ENSMUSG00000024068 ENSMUST00000233554 Spast protein_coding Interval_163222 chr9 18507467 18509498 + 0 NA intron (ENSMUSG00000109564.1, intron 74 of 77) protein_coding-intron (ENSMUSG00000109564.1, intron 5 of 8) 30079 ENSMUSG00000038691.5 ENSMUSG00000038691 ENSMUST00000215255 Mbd3l1 protein_coding Interval_143699 chr7 15804482 15805244 + 0 NA Intergenic Intergenic -16703 ENSMUSG00000105410.1 ENSMUSG00000105410 ENSMUST00000197059 Gtpbp4-ps7 processed_pseudogene Interval_140309 chr6 116337440 116338571 + 0 NA promoter-TSS (ENSMUSG00000025702.15) protein_coding-promoter-TSS (ENSMUSG00000025702.15) -56 ENSMUSG00000107497.1 ENSMUSG00000107497 ENSMUST00000205137 Gm44957 processed_transcript Interval_135896 chr6 48528733 48530364 + 0 NA exon (ENSMUSG00000107476.3, exon 7 of 8) transcribed_unitary_pseudogene-exon (ENSMUSG00000107476.3, exon 7 of 8) -4458 ENSMUSG00000044211.9 ENSMUSG00000044211 ENSMUST00000056948 Gm7887 processed_pseudogene Interval_172697 chrX 43372663 43372873 + 0 NA intron (ENSMUSG00000016150.15, intron 2 of 2) protein_coding-intron (ENSMUSG00000016150.15, intron 2 of 2) 39975 ENSMUSG00000081300.1 ENSMUSG00000081300 ENSMUST00000121714 Gm14587 processed_pseudogene Interval_61707 chr15 83501600 83502618 + 0 NA TTS (ENSMUSG00000022442.16) protein_coding-TTS (ENSMUSG00000022442.16) 8684 ENSMUSG00000022442.16 ENSMUSG00000022442 ENSMUST00000154401 Ttll1 protein_coding Interval_170268 chr9 106580200 106581930 + 0 NA Intergenic Intergenic -10069 ENSMUSG00000041009.8 ENSMUSG00000041009 ENSMUST00000085111 Iqcf4 protein_coding Interval_107790 chr3 115067717 115068571 + 0 NA intron (ENSMUSG00000027965.15, intron 1 of 4) protein_coding-intron (ENSMUSG00000027965.15, intron 1 of 5) 103905 ENSMUSG00000106510.1 ENSMUSG00000106510 ENSMUST00000198707 Gm18429 processed_pseudogene Interval_94132 chr2 84589016 84589708 + 0 NA intron (ENSMUSG00000118521.1, intron 1 of 2) processed_pseudogene-intron (ENSMUSG00000118521.1, intron 1 of 2) 3478 ENSMUSG00000118521.1 ENSMUSG00000118521 ENSMUST00000238924 AL928616.1 processed_pseudogene Interval_109630 chr3 145563284 145563735 + 0 NA Intergenic Intergenic -12738 ENSMUSG00000074182.8 ENSMUSG00000074182 ENSMUST00000197474 Znhit6 protein_coding Interval_31773 chr11 102768753 102769209 + 0 NA promoter-TSS (ENSMUSG00000020926.16) protein_coding-promoter-TSS (ENSMUSG00000020926.16) -5136 ENSMUSG00000020926.16 ENSMUSG00000020926 ENSMUST00000135513 Adam11 protein_coding Interval_82722 chr18 76190732 76192032 + 0 NA Intergenic Intergenic 20830 ENSMUSG00000098276.1 ENSMUSG00000098276 ENSMUST00000184549 Mir6358 miRNA Interval_69908 chr17 3124373 3124889 + 0 NA TTS (ENSMUSG00000116596.1) processed_pseudogene-TTS (ENSMUSG00000116596.1) 170 ENSMUSG00000116596.1 ENSMUSG00000116596 ENSMUST00000231485 Gm49798 processed_pseudogene Interval_156886 chr8 61479623 61480818 + 0 NA Intergenic Intergenic -7535 ENSMUSG00000031641.14 ENSMUSG00000031641 ENSMUST00000150932 Cbr4 protein_coding Interval_49464 chr13 112247998 112248196 + 0 NA Intergenic Intergenic 28904 ENSMUSG00000104438.1 ENSMUSG00000104438 ENSMUST00000192356 Gm37427 TEC Interval_90582 chr2 31256409 31256880 + 0 NA intron (ENSMUSG00000062661.6, intron 1 of 5) protein_coding-intron (ENSMUSG00000062661.6, intron 1 of 7) 10478 ENSMUSG00000062661.6 ENSMUSG00000062661 ENSMUST00000150670 Ncs1 protein_coding Interval_173266 chrX 75754090 75754605 + 0 NA intron (ENSMUSG00000087396.7, intron 1 of 4) processed_transcript-intron (ENSMUSG00000087396.7, intron 1 of 3) 30675 ENSMUSG00000081996.1 ENSMUSG00000081996 ENSMUST00000117092 Gm7153 processed_pseudogene Interval_75047 chr17 62310224 62310551 + 0 NA Intergenic Intergenic 125670 ENSMUSG00000117066.1 ENSMUSG00000117066 ENSMUST00000232942 Gm49860 lincRNA Interval_81322 chr18 57976779 57977033 + 0 NA Intergenic Intergenic 49701 ENSMUSG00000024597.11 ENSMUSG00000024597 ENSMUST00000236673 Slc12a2 protein_coding Interval_91952 chr2 52001013 52002481 + 0 NA Intergenic Intergenic -28253 ENSMUSG00000026946.9 ENSMUSG00000026946 ENSMUST00000123521 Nmi protein_coding Interval_98538 chr2 153080910 153081547 + 0 NA exon (ENSMUSG00000027474.13, exon 9 of 9) protein_coding-exon (ENSMUSG00000027474.13, exon 9 of 9) 15273 ENSMUSG00000027474.13 ENSMUSG00000027474 ENSMUST00000109800 Ccm2l protein_coding Interval_81289 chr18 57454218 57454598 + 0 NA intron (ENSMUSG00000086607.7, intron 2 of 3) antisense-intron (ENSMUSG00000086607.7, intron 2 of 3) -18045 ENSMUSG00000069372.3 ENSMUSG00000069372 ENSMUST00000209786 Ctxn3 protein_coding Interval_10036 chr1 165252126 165252694 + 0 NA Intergenic Intergenic -15897 ENSMUSG00000040843.10 ENSMUSG00000040843 ENSMUST00000156102 Tiprl protein_coding Interval_45369 chr13 54680371 54682123 + 0 NA TTS (ENSMUSG00000034928.16) protein_coding-TTS (ENSMUSG00000034928.16) 6561 ENSMUSG00000034928.16 ENSMUSG00000034928 ENSMUST00000150626 Rnf44 protein_coding Interval_29600 chr11 85276950 85277521 + 0 NA Intergenic Intergenic 20514 ENSMUSG00000088136.1 ENSMUSG00000088136 ENSMUST00000157511 Gm22587 misc_RNA Interval_58575 chr15 36269438 36269989 + 0 NA intron (ENSMUSG00000022280.9, intron 1 of 7) protein_coding-intron (ENSMUSG00000022280.9, intron 1 of 9) 13385 ENSMUSG00000022280.9 ENSMUSG00000022280 ENSMUST00000227735 Rnf19a protein_coding Interval_147074 chr7 60775346 60776138 + 0 NA Intergenic Intergenic 20860 ENSMUSG00000109533.1 ENSMUSG00000109533 ENSMUST00000209138 Gm7394 processed_pseudogene Interval_79821 chr18 35341474 35342241 + 0 NA intron (ENSMUSG00000024357.10, intron 3 of 8) protein_coding-intron (ENSMUSG00000024357.10, intron 4 of 9) 77828 ENSMUSG00000117876.1 ENSMUSG00000117876 ENSMUST00000236119 Gm50146 antisense Interval_16425 chr10 62826040 62826363 + 0 NA intron (ENSMUSG00000047146.17, intron 6 of 12) protein_coding-intron (ENSMUSG00000047146.17, intron 5 of 10) 33793 ENSMUSG00000112309.1 ENSMUSG00000112309 ENSMUST00000220243 Gm48353 TEC Interval_16104 chr10 60756299 60757441 + 0 NA Intergenic Intergenic -4087 ENSMUSG00000020100.15 ENSMUSG00000020100 ENSMUST00000144989 Slc29a3 protein_coding Interval_136995 chr6 65796070 65797933 + 0 NA intron (ENSMUSG00000029913.14, intron 2 of 2) protein_coding-intron (ENSMUSG00000029913.14, intron 2 of 10) -17752 ENSMUSG00000085689.1 ENSMUSG00000085689 ENSMUST00000144594 Gm16838 antisense Interval_68366 chr16 74435334 74435626 + 0 NA Intergenic Intergenic -93413 ENSMUSG00000104758.1 ENSMUSG00000104758 ENSMUST00000199719 Mir691 miRNA Interval_48507 chr13 99526698 99526885 + 0 NA Intergenic Intergenic 10162 ENSMUSG00000097027.2 ENSMUSG00000097027 ENSMUST00000181939 Gm26559 bidirectional_promoter_lncRNA Interval_3692 chr1 60860335 60861054 + 0 NA Intergenic Intergenic -19644 ENSMUSG00000102549.1 ENSMUSG00000102549 ENSMUST00000193735 Gm38137 TEC Interval_136341 chr6 53451235 53451445 + 0 NA intron (ENSMUSG00000053007.9, intron 4 of 5) protein_coding-intron (ENSMUSG00000053007.9, intron 5 of 10) 17366 ENSMUSG00000096147.1 ENSMUSG00000096147 ENSMUST00000083282 Gm25818 snRNA Interval_112202 chr4 35598065 35598827 + 0 NA Intergenic Intergenic 162232 ENSMUSG00000083851.1 ENSMUSG00000083851 ENSMUST00000117931 Gm12365 processed_pseudogene Interval_62621 chr15 95716818 95717094 + 0 NA TTS (ENSMUSG00000116058.1) processed_pseudogene-TTS (ENSMUSG00000116058.1) 1763 ENSMUSG00000116058.1 ENSMUSG00000116058 ENSMUST00000230585 Gm8843 processed_pseudogene Interval_147293 chr7 65534239 65534672 + 0 NA Intergenic Intergenic -47615 ENSMUSG00000086662.7 ENSMUSG00000086662 ENSMUST00000154632 BC046251 lincRNA Interval_160499 chr8 110022099 110022664 + 0 NA Intergenic Intergenic -8057 ENSMUSG00000110561.1 ENSMUSG00000110561 ENSMUST00000212348 Gm45888 processed_pseudogene Interval_169045 chr9 91068193 91068383 + 0 NA Intergenic Intergenic -28861 ENSMUSG00000056904.3 ENSMUSG00000056904 ENSMUST00000077991 Gm5620 processed_pseudogene Interval_149569 chr7 99648639 99648991 + 0 NA Intergenic Intergenic 5003 ENSMUSG00000065698.1 ENSMUSG00000065698 ENSMUST00000083764 Gm25409 snoRNA Interval_110200 chr3 154201742 154202046 + 0 NA intron (ENSMUSG00000028360.10, intron 2 of 21) protein_coding-intron (ENSMUSG00000028360.10, intron 2 of 21) 47606 ENSMUSG00000106500.1 ENSMUSG00000106500 ENSMUST00000200319 Gm42540 TEC Interval_23583 chr11 23565711 23566227 + 0 NA intron (ENSMUSG00000042208.15, intron 22 of 22) protein_coding-intron (ENSMUSG00000042208.15, intron 22 of 22) -7127 ENSMUSG00000085415.1 ENSMUSG00000085415 ENSMUST00000125204 Selenok-ps1 processed_transcript Interval_2818 chr1 45826732 45828220 + 0 NA Intergenic Intergenic 4918 ENSMUSG00000025995.16 ENSMUSG00000025995 ENSMUST00000186651 Wdr75 protein_coding Interval_85054 chr19 21836726 21837000 + 0 NA intron (ENSMUSG00000024754.13, intron 19 of 24) protein_coding-intron (ENSMUSG00000024754.13, intron 18 of 23) -3107 ENSMUSG00000118021.1 ENSMUSG00000118021 ENSMUST00000237423 Gm50130 antisense Interval_58233 chr15 31258025 31259104 + 0 NA intron (ENSMUSG00000039168.15, intron 2 of 3) protein_coding-intron (ENSMUSG00000039168.15, intron 2 of 3) -17927 ENSMUSG00000055416.6 ENSMUSG00000055416 ENSMUST00000068987 Fam136b-ps processed_pseudogene Interval_18133 chr10 82875951 82876726 + 0 NA intron (ENSMUSG00000020250.10, intron 4 of 14) protein_coding-intron (ENSMUSG00000020250.10, intron 3 of 13) 9712 ENSMUSG00000109864.1 ENSMUSG00000109864 ENSMUST00000211623 Eid3 protein_coding Interval_86401 chr19 40251338 40252309 + 0 NA intron (ENSMUSG00000055044.12, intron 2 of 2) protein_coding-intron (ENSMUSG00000055044.12, intron 2 of 6) -21018 ENSMUSG00000055044.12 ENSMUSG00000055044 ENSMUST00000182636 Pdlim1 protein_coding Interval_89599 chr2 23137711 23137957 + 0 NA intron (ENSMUSG00000026779.6, intron 6 of 6) protein_coding-intron (ENSMUSG00000026779.6, intron 6 of 11) 18063 ENSMUSG00000026779.6 ENSMUSG00000026779 ENSMUST00000136207 Mastl protein_coding Interval_83251 chr18 83007554 83008277 + 0 NA Intergenic Intergenic -3988 ENSMUSG00000118094.1 ENSMUSG00000118094 ENSMUST00000236941 AC142100.1 processed_transcript Interval_83454 chr18 85701309 85701668 + 0 NA Intergenic Intergenic 15237 ENSMUSG00000117854.1 ENSMUSG00000117854 ENSMUST00000237113 Gm7612 processed_pseudogene Interval_35346 chr12 20908395 20908958 + 0 NA intron (ENSMUSG00000069755.5, intron 3 of 5) transcribed_unprocessed_pseudogene-intron (ENSMUSG00000085642.8, intron 1 of 1) -12038 ENSMUSG00000073179.3 ENSMUSG00000073179 ENSMUST00000084451 Gm10478 pseudogene Interval_22404 chr11 9638687 9639015 + 0 NA intron (ENSMUSG00000004668.14, intron 59 of 61) protein_coding-intron (ENSMUSG00000004668.14, intron 59 of 61) 66772 ENSMUSG00000104137.1 ENSMUSG00000104137 ENSMUST00000195362 Gm36954 TEC Interval_140203 chr6 115519061 115519896 + 0 NA Intergenic Intergenic 17422 ENSMUSG00000107704.1 ENSMUSG00000107704 ENSMUST00000203752 Gm36355 lincRNA Interval_64971 chr16 17609665 17610522 + 0 NA Intergenic Intergenic -9270 ENSMUSG00000005899.14 ENSMUSG00000005899 ENSMUST00000232270 Smpd4 protein_coding Interval_36910 chr12 55302005 55303509 + 0 NA promoter-TSS (ENSMUSG00000021023.14) protein_coding-promoter-TSS (ENSMUSG00000021023.14) 3180 ENSMUSG00000021023.14 ENSMUSG00000021023 ENSMUST00000183654 Prorp protein_coding Interval_121726 chr5 5756561 5756865 + 0 NA Intergenic Intergenic -16312 ENSMUSG00000015652.9 ENSMUSG00000015652 ENSMUST00000169542 Steap1 protein_coding Interval_152594 chr7 134936988 134938727 + 0 NA exon (ENSMUSG00000073805.5, exon 1 of 4) protein_coding-exon (ENSMUSG00000073805.5, exon 1 of 4) 421 ENSMUSG00000073805.5 ENSMUSG00000073805 ENSMUST00000210826 Insyn2a protein_coding Interval_125716 chr5 73506466 73506835 + 0 NA intron (ENSMUSG00000051674.15, intron 2 of 7) protein_coding-intron (ENSMUSG00000051674.15, intron 1 of 10) 13994 ENSMUSG00000051674.15 ENSMUSG00000051674 ENSMUST00000136268 Dcun1d4 protein_coding Interval_3076 chr1 52934941 52935253 + 0 NA intron (ENSMUSG00000043629.12, intron 1 of 1) protein_coding-intron (ENSMUSG00000043629.12, intron 1 of 1) -61099 ENSMUSG00000089802.1 ENSMUSG00000089802 ENSMUST00000162523 Gm16107 processed_pseudogene Interval_78202 chr18 10092577 10093289 + 0 NA intron (ENSMUSG00000024290.9, intron 20 of 32) protein_coding-intron (ENSMUSG00000024290.9, intron 21 of 32) 19445 ENSMUSG00000024290.9 ENSMUSG00000024290 ENSMUST00000235075 Rock1 protein_coding Interval_108405 chr3 126716584 126717082 + 0 NA intron (ENSMUSG00000053819.16, intron 3 of 20) protein_coding-intron (ENSMUSG00000053819.16, intron 3 of 18) -20664 ENSMUSG00000105378.1 ENSMUSG00000105378 ENSMUST00000199936 Gm42515 TEC Interval_145050 chr7 29740014 29740482 + 0 NA Intergenic Intergenic -2824 ENSMUSG00000065659.1 ENSMUSG00000065659 ENSMUST00000083725 Gm23103 snRNA Interval_69917 chr17 3191880 3192566 + 0 NA intron (ENSMUSG00000046201.9, intron 17 of 19) protein_coding-intron (ENSMUSG00000046201.9, intron 17 of 19) -39048 ENSMUSG00000116858.1 ENSMUSG00000116858 ENSMUST00000232042 Gm49797 lincRNA Interval_36530 chr12 48559556 48559808 + 0 NA intron (ENSMUSG00000091277.2, intron 1 of 1) unprocessed_pseudogene-intron (ENSMUSG00000091277.2, intron 1 of 1) 203 ENSMUSG00000091277.2 ENSMUSG00000091277 ENSMUST00000169406 Gm1818 unprocessed_pseudogene Interval_133992 chr6 17543918 17544101 + 0 NA intron (ENSMUSG00000009376.15, intron 3 of 3) protein_coding-intron (ENSMUSG00000009376.15, intron 10 of 19) 9008 ENSMUSG00000009376.15 ENSMUSG00000009376 ENSMUST00000148903 Met protein_coding Interval_7434 chr1 131290229 131291141 + 0 NA intron (ENSMUSG00000026425.15, intron 22 of 22) protein_coding-intron (ENSMUSG00000026425.15, intron 22 of 22) -20141 ENSMUSG00000042349.13 ENSMUSG00000042349 ENSMUST00000159195 Ikbke protein_coding Interval_66920 chr16 38536511 38537291 + 0 NA intron (ENSMUSG00000034064.14, intron 6 of 10) protein_coding-intron (ENSMUSG00000034064.14, intron 6 of 10) 13321 ENSMUSG00000034064.14 ENSMUSG00000034064 ENSMUST00000137762 Poglut1 protein_coding Interval_100030 chr2 166632003 166633308 + 0 NA TTS (ENSMUSG00000039621.13) protein_coding-TTS (ENSMUSG00000039621.13) 22487 ENSMUSG00000093063.1 ENSMUSG00000093063 ENSMUST00000175322 Gm23152 rRNA Interval_99429 chr2 160997435 160997629 + 0 NA TTS (ENSMUSG00000077795.1) snoRNA-TTS (ENSMUSG00000077795.1) 755 ENSMUSG00000077795.1 ENSMUSG00000077795 ENSMUST00000104607 Gm25561 snoRNA Interval_29644 chr11 85771261 85771659 + 0 NA intron (ENSMUSG00000085514.1, intron 1 of 2) protein_coding-intron (ENSMUSG00000059439.15, intron 23 of 24) 4220 ENSMUSG00000085514.1 ENSMUSG00000085514 ENSMUST00000134305 Bcas3os2 antisense Interval_172175 chrX 8197066 8197294 + 0 NA intron (ENSMUSG00000031169.13, intron 9 of 9) protein_coding-intron (ENSMUSG00000031169.13, intron 14 of 14) -4282 ENSMUSG00000031168.14 ENSMUSG00000031168 ENSMUST00000149495 Ebp protein_coding Interval_8455 chr1 139514537 139515890 + 0 NA intron (ENSMUSG00000026368.6, intron 8 of 11) protein_coding-intron (ENSMUSG00000026368.6, intron 8 of 11) -1181 ENSMUSG00000026368.6 ENSMUSG00000026368 ENSMUST00000141842 F13b protein_coding Interval_19892 chr10 110976229 110977767 + 0 NA intron (ENSMUSG00000035798.14, intron 3 of 16) protein_coding-intron (ENSMUSG00000035798.14, intron 3 of 16) 32997 ENSMUSG00000035798.14 ENSMUSG00000035798 ENSMUST00000218981 Zdhhc17 protein_coding Interval_34037 chr11 120136891 120137080 + 0 NA TTS (ENSMUSG00000061306.16) protein_coding-TTS (ENSMUSG00000061306.16) -13577 ENSMUSG00000085636.1 ENSMUSG00000085636 ENSMUST00000140273 Gm11769 processed_transcript Interval_61062 chr15 79012779 79013593 + 0 NA Intergenic Intergenic -2145 ENSMUSG00000116505.1 ENSMUSG00000116505 ENSMUST00000230425 Gm10865 antisense Interval_164162 chr9 32094188 32096790 + 0 NA Intergenic Intergenic 17208 ENSMUSG00000110840.1 ENSMUSG00000110840 ENSMUST00000214707 Gm47496 processed_pseudogene Interval_69468 chr16 93753846 93755129 + 0 NA intron (ENSMUSG00000022946.10, intron 8 of 35) protein_coding-intron (ENSMUSG00000022946.10, intron 9 of 36) -38302 ENSMUSG00000022946.10 ENSMUSG00000022946 ENSMUST00000228423 Dop1b protein_coding Interval_73101 chr17 34805076 34805541 + 0 NA promoter-TSS (ENSMUSG00000024365.9) protein_coding-promoter-TSS (ENSMUSG00000024365.9) -1906 ENSMUSG00000024365.9 ENSMUSG00000024365 ENSMUST00000173394 Cyp21a1 protein_coding Interval_36605 chr12 51362544 51362971 + 0 NA intron (ENSMUSG00000035293.13, intron 3 of 3) protein_coding-intron (ENSMUSG00000035293.13, intron 8 of 14) -7918 ENSMUSG00000035293.13 ENSMUSG00000035293 ENSMUST00000152236 G2e3 protein_coding Interval_42295 chr13 11882581 11883330 + 0 NA intron (ENSMUSG00000021313.16, intron 6 of 24) protein_coding-intron (ENSMUSG00000021313.16, intron 7 of 104) -56603 ENSMUSG00000098110.1 ENSMUSG00000098110 ENSMUST00000182176 Gm26956 processed_pseudogene Interval_31322 chr11 99921526 99921730 + 0 NA Intergenic Intergenic 6877 ENSMUSG00000078256.3 ENSMUSG00000078256 ENSMUST00000105053 Gm11565 protein_coding Interval_29719 chr11 86395567 86396057 + 0 NA Intergenic Intergenic -13014 ENSMUSG00000088091.1 ENSMUSG00000088091 ENSMUST00000157466 Gm23667 rRNA Interval_72071 chr17 27834055 27834267 + 0 NA Intergenic Intergenic -5974 ENSMUSG00000024217.10 ENSMUSG00000024217 ENSMUST00000233657 Snrpc protein_coding Interval_157120 chr8 65542647 65543223 + 0 NA Intergenic Intergenic 124766 ENSMUSG00000064763.1 ENSMUSG00000064763 ENSMUST00000082829 Gm23515 snRNA Interval_114894 chr4 86763102 86764754 + 0 NA intron (ENSMUSG00000038024.17, intron 1 of 32) protein_coding-intron (ENSMUSG00000038024.17, intron 1 of 25) -10327 ENSMUSG00000038024.17 ENSMUSG00000038024 ENSMUST00000128710 Dennd4c protein_coding Interval_155435 chr8 33599294 33600497 + 0 NA exon (ENSMUSG00000009630.10, exon 1 of 7) protein_coding-exon (ENSMUSG00000009630.10, exon 1 of 7) 270 ENSMUSG00000009630.10 ENSMUSG00000009630 ENSMUST00000009774 Ppp2cb protein_coding Interval_76451 chr17 80277702 80277942 + 0 NA intron (ENSMUSG00000035051.15, intron 2 of 22) protein_coding-intron (ENSMUSG00000035051.15, intron 2 of 22) -9980 ENSMUSG00000035051.15 ENSMUSG00000035051 ENSMUST00000234703 Dhx57 protein_coding Interval_145434 chr7 34737113 34738183 + 0 NA intron (ENSMUSG00000060402.8, intron 2 of 2) protein_coding-intron (ENSMUSG00000060402.8, intron 2 of 3) 16164 ENSMUSG00000060402.8 ENSMUSG00000060402 ENSMUST00000205390 Chst8 protein_coding Interval_147729 chr7 73093248 73094454 + 0 NA Intergenic Intergenic 4428 ENSMUSG00000108329.1 ENSMUSG00000108329 ENSMUST00000205307 Gm44725 lincRNA Interval_138456 chr6 88350292 88350616 + 0 NA intron (ENSMUSG00000033216.9, intron 4 of 7) protein_coding-intron (ENSMUSG00000033216.9, intron 4 of 6) 3152 ENSMUSG00000107472.1 ENSMUSG00000107472 ENSMUST00000203631 Gm44265 sense_intronic Interval_18159 chr10 83080051 83081456 + 0 NA intron (ENSMUSG00000034612.7, intron 1 of 2) protein_coding-intron (ENSMUSG00000034612.7, intron 1 of 2) -49058 ENSMUSG00000112084.1 ENSMUSG00000112084 ENSMUST00000218071 Gm10773 TEC Interval_110045 chr3 152740135 152740742 + 0 NA TTS (ENSMUSG00000039047.17) protein_coding-TTS (ENSMUSG00000039047.17) 26315 ENSMUSG00000039047.17 ENSMUSG00000039047 ENSMUST00000160651 Pigk protein_coding Interval_117730 chr4 125878844 125879724 + 0 NA Intergenic Intergenic 43133 ENSMUSG00000085562.7 ENSMUSG00000085562 ENSMUST00000144539 2610028E06Rik lincRNA Interval_76008 chr17 74327008 74328541 + 0 NA promoter-TSS (ENSMUSG00000117086.1) processed_pseudogene-promoter-TSS (ENSMUSG00000117086.1) -30 ENSMUSG00000117086.1 ENSMUSG00000117086 ENSMUST00000233887 Gm31328 processed_pseudogene Interval_30853 chr11 96886260 96886566 + 0 NA Intergenic Intergenic -12459 ENSMUSG00000087117.8 ENSMUSG00000087117 ENSMUST00000183967 Gm11523 processed_transcript Interval_111710 chr4 26455430 26456353 + 0 NA Intergenic Intergenic 13430 ENSMUSG00000082573.1 ENSMUSG00000082573 ENSMUST00000118958 Gm11903 processed_pseudogene Interval_98147 chr2 148756787 148757808 + 0 NA Intergenic Intergenic 6939 ENSMUSG00000055177.15 ENSMUSG00000055177 ENSMUST00000109952 Cstl1 protein_coding Interval_165294 chr9 46071893 46072671 + 0 NA intron (ENSMUSG00000034135.15, intron 1 of 24) protein_coding-intron (ENSMUSG00000034135.15, intron 1 of 22) -50848 ENSMUSG00000034135.15 ENSMUSG00000034135 ENSMUST00000138338 Sik3 protein_coding Interval_4173 chr1 71203640 71203847 + 0 NA Intergenic Intergenic -47723 ENSMUSG00000101551.1 ENSMUSG00000101551 ENSMUST00000188170 Gm8870 processed_pseudogene Interval_35352 chr12 20946908 20948268 + 0 NA Intergenic Intergenic -26326 ENSMUSG00000069755.5 ENSMUSG00000069755 ENSMUST00000208744 Zfp125 transcribed_unprocessed_pseudogene Interval_35741 chr12 28784917 28785578 + 0 NA intron (ENSMUSG00000036613.8, intron 3 of 4) protein_coding-intron (ENSMUSG00000036613.8, intron 3 of 9) -4422 ENSMUSG00000114081.1 ENSMUSG00000114081 ENSMUST00000220880 Gm48904 TEC Interval_87384 chr19 48203669 48207080 + 0 NA promoter-TSS (ENSMUSG00000063434.6) protein_coding-promoter-TSS (ENSMUSG00000063434.6) 35271 ENSMUSG00000089004.1 ENSMUSG00000089004 ENSMUST00000158379 Gm23857 rRNA Interval_87575 chr19 53528477 53530311 + 0 NA exon (ENSMUSG00000034765.6, exon 1 of 4) protein_coding-exon (ENSMUSG00000034765.6, exon 1 of 4) 261 ENSMUSG00000118210.1 ENSMUSG00000118210 ENSMUST00000236686 Gm50394 antisense Interval_44132 chr13 41105175 41105662 + 0 NA exon (ENSMUSG00000021362.7, exon 3 of 5) protein_coding-exon (ENSMUSG00000021362.7, exon 3 of 5) 265 ENSMUSG00000021362.7 ENSMUSG00000021362 ENSMUST00000225271 Gcm2 protein_coding Interval_168845 chr9 87978603 87980509 + 0 NA Intergenic Intergenic 41993 ENSMUSG00000077553.1 ENSMUSG00000077553 ENSMUST00000104365 Gm23176 snoRNA Interval_103346 chr3 39919357 39920014 + 0 NA Intergenic Intergenic 96108 ENSMUSG00000106948.1 ENSMUSG00000106948 ENSMUST00000202316 Gm42785 processed_pseudogene Interval_93038 chr2 69729110 69729510 + 0 NA intron (ENSMUSG00000042133.16, intron 1 of 8) protein_coding-intron (ENSMUSG00000042133.16, intron 1 of 13) 6765 ENSMUSG00000042133.16 ENSMUSG00000042133 ENSMUST00000143954 Ppig protein_coding Interval_72736 chr17 31830611 31831107 + 0 NA Intergenic Intergenic 20716 ENSMUSG00000024042.7 ENSMUSG00000024042 ENSMUST00000234142 Sik1 protein_coding Interval_164497 chr9 37484679 37485504 + 0 NA Intergenic Intergenic -4230 ENSMUSG00000042138.9 ENSMUSG00000042138 ENSMUST00000213411 Msantd2 protein_coding Interval_11594 chr1 183088470 183089727 + 0 NA exon (ENSMUSG00000030768.12, exon 10 of 10) protein_coding-exon (ENSMUSG00000030768.12, exon 10 of 10) 14492 ENSMUSG00000094807.2 ENSMUSG00000094807 ENSMUST00000178492 Gm24975 miRNA Interval_91645 chr2 45204678 45205970 + 0 NA Intergenic Intergenic 48399 ENSMUSG00000100135.1 ENSMUSG00000100135 ENSMUST00000188811 Gm28643 lincRNA Interval_74809 chr17 56668527 56669077 + 0 NA Intergenic Intergenic -4582 ENSMUSG00000002372.9 ENSMUSG00000002372 ENSMUST00000232922 Ranbp3 protein_coding Interval_85261 chr19 24217597 24218523 + 0 NA intron (ENSMUSG00000024812.11, intron 1 of 23) protein_coding-intron (ENSMUSG00000024812.11, intron 1 of 22) 60111 ENSMUSG00000059363.10 ENSMUSG00000059363 ENSMUST00000132688 Fxn protein_coding Interval_16881 chr10 69452320 69454156 + 0 NA intron (ENSMUSG00000069601.14, intron 1 of 1) protein_coding-intron (ENSMUSG00000069601.14, intron 1 of 1) -29490 ENSMUSG00000111899.1 ENSMUSG00000111899 ENSMUST00000218846 Gm18636 processed_pseudogene Interval_167406 chr9 68771064 68771330 + 0 NA intron (ENSMUSG00000032238.17, intron 1 of 5) protein_coding-intron (ENSMUSG00000032238.17, intron 1 of 10) 117306 ENSMUSG00000032238.17 ENSMUSG00000032238 ENSMUST00000113624 Rora protein_coding Interval_167291 chr9 67076118 67076808 + 0 NA Intergenic Intergenic -25837 ENSMUSG00000111825.1 ENSMUSG00000111825 ENSMUST00000213227 Gm10646 lincRNA Interval_29533 chr11 84729218 84729587 + 0 NA Intergenic Intergenic -8970 ENSMUSG00000085044.1 ENSMUSG00000085044 ENSMUST00000150735 1700109G15Rik lincRNA Interval_30647 chr11 95673522 95674317 + 0 NA intron (ENSMUSG00000038845.11, intron 3 of 6) protein_coding-intron (ENSMUSG00000038845.11, intron 3 of 6) 6909 ENSMUSG00000038845.11 ENSMUSG00000038845 ENSMUST00000123001 Phb protein_coding Interval_16811 chr10 68282618 68283606 + 0 NA Intergenic Intergenic -4372 ENSMUSG00000019947.10 ENSMUSG00000019947 ENSMUST00000218425 Arid5b protein_coding Interval_62511 chr15 93627448 93629439 + 0 NA Intergenic Intergenic 51206 ENSMUSG00000115993.1 ENSMUSG00000115993 ENSMUST00000231103 Zfp42-ps1 processed_pseudogene Interval_19876 chr10 110793928 110796803 + 0 NA promoter-TSS (ENSMUSG00000089461.1) snoRNA-promoter-TSS (ENSMUSG00000089461.1) -808 ENSMUSG00000089461.1 ENSMUSG00000089461 ENSMUST00000158836 Gm23698 snoRNA Interval_138316 chr6 87129601 87129838 + 0 NA Intergenic Intergenic 11133 ENSMUSG00000108195.1 ENSMUSG00000108195 ENSMUST00000204151 Gm44415 TEC Interval_173275 chrX 75829172 75830744 + 0 NA intron (ENSMUSG00000016382.15, intron 1 of 15) protein_coding-intron (ENSMUSG00000016382.15, intron 1 of 15) 13227 ENSMUSG00000016382.15 ENSMUSG00000016382 ENSMUST00000126599 Pls3 protein_coding Interval_165556 chr9 49442490 49442719 + 0 NA intron (ENSMUSG00000040219.4, intron 19 of 21) protein_coding-intron (ENSMUSG00000040219.4, intron 19 of 21) -23168 ENSMUSG00000032257.6 ENSMUSG00000032257 ENSMUST00000216227 Ankk1 protein_coding Interval_101930 chr3 12099441 12099920 + 0 NA Intergenic Intergenic -255321 ENSMUSG00000104015.1 ENSMUSG00000104015 ENSMUST00000192022 Gm10745 lincRNA Interval_5176 chr1 86259953 86260715 + 0 NA TTS (ENSMUSG00000062590.13) protein_coding-TTS (ENSMUSG00000062590.13) 41041 ENSMUSG00000087538.1 ENSMUSG00000087538 ENSMUST00000126385 Gm16341 antisense Interval_77036 chr17 85867906 85868373 + 0 NA intron (ENSMUSG00000117501.1, intron 2 of 2) lincRNA-intron (ENSMUSG00000117501.1, intron 2 of 2) -44095 ENSMUSG00000100345.1 ENSMUSG00000100345 ENSMUST00000186162 Gm29418 lincRNA Interval_126847 chr5 94366285 94366545 + 0 NA intron (ENSMUSG00000073497.6, intron 1 of 2) protein_coding-intron (ENSMUSG00000073497.6, intron 1 of 2) -10902 ENSMUSG00000073497.6 ENSMUSG00000073497 ENSMUST00000202253 AA792892 protein_coding Interval_69824 chr16 97101781 97102026 + 0 NA intron (ENSMUSG00000050272.10, intron 1 of 32) protein_coding-intron (ENSMUSG00000050272.10, intron 1 of 32) 183171 ENSMUSG00000117324.1 ENSMUSG00000117324 ENSMUST00000232718 Gm32432 antisense Interval_154263 chr8 13916614 13917252 + 0 NA intron (ENSMUSG00000038365.8, intron 2 of 10) protein_coding-intron (ENSMUSG00000038365.8, intron 2 of 9) -10046 ENSMUSG00000038365.8 ENSMUSG00000038365 ENSMUST00000209310 Fbxo25 protein_coding Interval_117022 chr4 119050825 119051413 + 0 NA Intergenic Intergenic 17992 ENSMUSG00000066060.5 ENSMUSG00000066060 ENSMUST00000128998 Gm12866 lincRNA Interval_83603 chr18 90509677 90510740 + 0 NA promoter-TSS (ENSMUSG00000024614.7) protein_coding-promoter-TSS (ENSMUSG00000024614.7) -64 ENSMUSG00000024614.7 ENSMUSG00000024614 ENSMUST00000236081 Tmx3 protein_coding Interval_24353 chr11 32621906 32622503 + 0 NA intron (ENSMUSG00000020272.8, intron 18 of 18) protein_coding-intron (ENSMUSG00000020272.8, intron 18 of 18) -20700 ENSMUSG00000020271.17 ENSMUSG00000020271 ENSMUST00000143290 Fbxw11 protein_coding Interval_81198 chr18 56362578 56363008 + 0 NA Intergenic Intergenic -27350 ENSMUSG00000117688.1 ENSMUSG00000117688 ENSMUST00000235993 Gm8629 processed_pseudogene Interval_117742 chr4 125961729 125963394 + 0 NA Intergenic Intergenic -40144 ENSMUSG00000085562.7 ENSMUSG00000085562 ENSMUST00000144539 2610028E06Rik lincRNA Interval_90543 chr2 31067067 31069916 + 0 NA intron (ENSMUSG00000075415.13, intron 4 of 5) protein_coding-intron (ENSMUSG00000075415.13, intron 6 of 13) 47821 ENSMUSG00000075415.13 ENSMUSG00000075415 ENSMUST00000136085 Fnbp1 protein_coding Interval_40509 chr12 105358860 105359078 + 0 NA intron (ENSMUSG00000097929.9, intron 2 of 3) protein_coding-intron (ENSMUSG00000097929.9, intron 2 of 2) 25099 ENSMUSG00000097929.9 ENSMUSG00000097929 ENSMUST00000180503 Tunar protein_coding Interval_112432 chr4 41235629 41236350 + 0 NA intron (ENSMUSG00000028433.14, intron 1 of 7) protein_coding-intron (ENSMUSG00000028433.14, intron 2 of 28) -16628 ENSMUSG00000081866.1 ENSMUSG00000081866 ENSMUST00000118435 Gm12401 processed_pseudogene Interval_3716 chr1 61638410 61640112 + 0 NA promoter-TSS (ENSMUSG00000052062.14) protein_coding-promoter-TSS (ENSMUSG00000052062.14) 375 ENSMUSG00000052062.14 ENSMUSG00000052062 ENSMUST00000094906 Pard3b protein_coding Interval_27265 chr11 65107665 65108021 + 0 NA intron (ENSMUSG00000033389.16, intron 1 of 20) protein_coding-intron (ENSMUSG00000033389.16, intron 1 of 20) -40036 ENSMUSG00000076394.1 ENSMUSG00000076394 ENSMUST00000102439 Gm25991 miRNA Interval_22381 chr11 9289491 9289697 + 0 NA intron (ENSMUSG00000004668.14, intron 16 of 61) protein_coding-intron (ENSMUSG00000004668.14, intron 16 of 61) 96143 ENSMUSG00000004668.14 ENSMUSG00000004668 ENSMUST00000151522 Abca13 protein_coding Interval_172622 chrX 38485444 38485865 + 0 NA Intergenic Intergenic 9193 ENSMUSG00000087390.1 ENSMUSG00000087390 ENSMUST00000130251 Gm7598 lincRNA Interval_62264 chr15 89291256 89291789 + 0 NA intron (ENSMUSG00000036529.17, intron 2 of 2) protein_coding-intron (ENSMUSG00000036529.17, intron 35 of 39) 2288 ENSMUSG00000036529.17 ENSMUSG00000036529 ENSMUST00000146637 Sbf1 protein_coding Interval_35673 chr12 27320352 27321496 + 0 NA Intergenic Intergenic 21650 ENSMUSG00000063632.6 ENSMUSG00000063632 ENSMUST00000079063 Sox11 protein_coding Interval_154603 chr8 22004557 22005840 + 0 NA intron (ENSMUSG00000006567.11, intron 14 of 21) protein_coding-intron (ENSMUSG00000006567.11, intron 13 of 20) 35423 ENSMUSG00000017049.4 ENSMUSG00000017049 ENSMUST00000017193 Ccdc70 protein_coding Interval_10227 chr1 167307769 167309682 + 0 NA promoter-TSS (ENSMUSG00000052428.10) protein_coding-promoter-TSS (ENSMUSG00000052428.10) 347 ENSMUSG00000052428.10 ENSMUSG00000052428 ENSMUST00000193101 Tmco1 protein_coding Interval_35611 chr12 25472584 25472769 + 0 NA TTS (ENSMUSG00000113669.1) lincRNA-TTS (ENSMUSG00000113669.1) 154491 ENSMUSG00000113669.1 ENSMUSG00000113669 ENSMUST00000221270 Gm36723 lincRNA Interval_72399 chr17 29604388 29606591 + 0 NA exon (ENSMUSG00000042203.8, exon 13 of 13) protein_coding-exon (ENSMUSG00000042203.8, exon 13 of 13) -9184 ENSMUSG00000089900.2 ENSMUSG00000089900 ENSMUST00000159875 Tbc1d22bos antisense Interval_10064 chr1 165563728 165564051 + 0 NA intron (ENSMUSG00000026567.16, intron 26 of 32) protein_coding-intron (ENSMUSG00000026567.16, intron 26 of 33) 8087 ENSMUSG00000089291.1 ENSMUSG00000089291 ENSMUST00000158666 Gm23208 snoRNA Interval_79087 chr18 24443610 24444882 + 0 NA Intergenic Intergenic -15076 ENSMUSG00000065532.1 ENSMUSG00000065532 ENSMUST00000083598 Mir187 miRNA Interval_116188 chr4 108516191 108516573 + 0 NA intron (ENSMUSG00000085093.1, intron 1 of 1) protein_coding-intron (ENSMUSG00000034610.14, intron 14 of 30) 2601 ENSMUSG00000085093.1 ENSMUSG00000085093 ENSMUST00000142835 Gm12737 sense_intronic Interval_101438 chr2 181392078 181393031 + 0 NA intron (ENSMUSG00000027583.13, intron 3 of 3) protein_coding-intron (ENSMUSG00000027583.13, intron 4 of 4) 8143 ENSMUSG00000085028.2 ENSMUSG00000085028 ENSMUST00000176590 Slc2a4rg-ps transcribed_unitary_pseudogene Interval_9429 chr1 157039076 157039749 + 0 NA intron (ENSMUSG00000101768.1, intron 2 of 2) lincRNA-intron (ENSMUSG00000101768.1, intron 2 of 2) -4135 ENSMUSG00000103325.1 ENSMUSG00000103325 ENSMUST00000193527 Gm10531 TEC Interval_143345 chr7 5981885 5982336 + 0 NA Intergenic Intergenic -14894 ENSMUSG00000092271.1 ENSMUSG00000092271 ENSMUST00000173862 Vmn1r-ps46 processed_pseudogene Interval_139232 chr6 97395222 97397422 + 0 NA TTS (ENSMUSG00000030064.16) protein_coding-TTS (ENSMUSG00000030064.16) -53428 ENSMUSG00000108185.1 ENSMUSG00000108185 ENSMUST00000204326 Gm19653 processed_pseudogene Interval_661 chr1 9664665 9665007 + 0 NA Intergenic Intergenic -24254 ENSMUSG00000099827.1 ENSMUSG00000099827 ENSMUST00000191209 Gm29520 lincRNA Interval_78353 chr18 12114945 12115397 + 0 NA intron (ENSMUSG00000049411.15, intron 1 of 3) protein_coding-intron (ENSMUSG00000049411.15, intron 2 of 12) 6309 ENSMUSG00000049411.15 ENSMUSG00000049411 ENSMUST00000234833 Tmem241 protein_coding Interval_48302 chr13 97955206 97955420 + 0 NA intron (ENSMUSG00000021662.11, intron 16 of 27) protein_coding-intron (ENSMUSG00000021662.11, intron 24 of 35) 61104 ENSMUSG00000021662.11 ENSMUSG00000021662 ENSMUST00000224866 Arhgef28 protein_coding Interval_64965 chr16 17561141 17562196 + 0 NA promoter-TSS (ENSMUSG00000022758.14) protein_coding-promoter-TSS (ENSMUSG00000022758.14) -265 ENSMUSG00000022758.14 ENSMUSG00000022758 ENSMUST00000231806 P2rx6 protein_coding Interval_51148 chr14 24170449 24171704 + 0 NA promoter-TSS (ENSMUSG00000114880.1) TEC-promoter-TSS (ENSMUSG00000114880.1) -90 ENSMUSG00000114880.1 ENSMUSG00000114880 ENSMUST00000224920 Gm49098 TEC Interval_159814 chr8 104023234 104023451 + 0 NA Intergenic Intergenic -47807 ENSMUSG00000110019.1 ENSMUSG00000110019 ENSMUST00000211125 Gm8748 processed_pseudogene Interval_49484 chr13 112368583 112368769 + 0 NA promoter-TSS (ENSMUSG00000114536.1) antisense-promoter-TSS (ENSMUSG00000114536.1) -831 ENSMUSG00000114536.1 ENSMUSG00000114536 ENSMUST00000224393 Gm48837 antisense Interval_74041 chr17 46230872 46231142 + 0 NA promoter-TSS (ENSMUSG00000076141.1) miRNA-promoter-TSS (ENSMUSG00000076141.1) -524 ENSMUSG00000076141.1 ENSMUSG00000076141 ENSMUST00000102187 Mir693 miRNA Interval_105731 chr3 88983626 88984268 + 0 NA exon (ENSMUSG00000028053.13, exon 2 of 27) protein_coding-exon (ENSMUSG00000028053.13, exon 2 of 27) -13218 ENSMUSG00000095712.1 ENSMUSG00000095712 ENSMUST00000178517 Gm26465 snRNA Interval_91435 chr2 38854728 38855950 + 0 NA promoter-TSS (ENSMUSG00000107884.1) TEC-promoter-TSS (ENSMUSG00000107884.1) -402 ENSMUSG00000107884.1 ENSMUSG00000107884 ENSMUST00000203683 Gm44144 TEC Interval_120925 chr4 151685857 151686050 + 0 NA intron (ENSMUSG00000014592.21, intron 2 of 7) protein_coding-intron (ENSMUSG00000014592.21, intron 3 of 23) 175751 ENSMUSG00000014592.21 ENSMUSG00000014592 ENSMUST00000135780 Camta1 protein_coding Interval_171121 chr9 114639618 114641380 + 0 NA promoter-TSS (ENSMUSG00000056167.8) protein_coding-promoter-TSS (ENSMUSG00000056167.8) -318 ENSMUSG00000056167.8 ENSMUSG00000056167 ENSMUST00000238809 Cnot10 protein_coding Interval_141017 chr6 124398883 124400524 + 0 NA promoter-TSS (ENSMUSG00000005069.12) protein_coding-promoter-TSS (ENSMUSG00000005069.12) -89 ENSMUSG00000005069.12 ENSMUSG00000005069 ENSMUST00000150812 Pex5 protein_coding Interval_2873 chr1 47024577 47025192 + 0 NA Intergenic Intergenic -42904 ENSMUSG00000101921.1 ENSMUSG00000101921 ENSMUST00000186233 Gm28825 processed_pseudogene Interval_64119 chr16 8539254 8539799 + 0 NA intron (ENSMUSG00000057880.12, intron 1 of 2) protein_coding-intron (ENSMUSG00000057880.12, intron 1 of 15) -44101 ENSMUSG00000057880.12 ENSMUSG00000057880 ENSMUST00000128459 Abat protein_coding Interval_95066 chr2 103669767 103670628 + 0 NA intron (ENSMUSG00000032724.5, intron 1 of 16) protein_coding-intron (ENSMUSG00000032724.5, intron 1 of 16) -44838 ENSMUSG00000032724.5 ENSMUSG00000032724 ENSMUST00000131122 Abtb2 protein_coding Interval_60558 chr15 74934703 74936132 + 0 NA exon (ENSMUSG00000116380.1, exon 5 of 5) lincRNA-exon (ENSMUSG00000116380.1, exon 5 of 5) 5980 ENSMUSG00000116380.1 ENSMUSG00000116380 ENSMUST00000230877 Gm39556 lincRNA Interval_7119 chr1 126407885 126408465 + 0 NA intron (ENSMUSG00000049690.15, intron 2 of 10) protein_coding-intron (ENSMUSG00000049690.15, intron 1 of 12) -83501 ENSMUSG00000103824.1 ENSMUSG00000103824 ENSMUST00000192213 Gm38177 TEC Interval_43067 chr13 23575647 23576786 + 0 NA exon (ENSMUSG00000099583.2, exon 1 of 1) protein_coding-exon (ENSMUSG00000099583.2, exon 1 of 1) 453 ENSMUSG00000099583.2 ENSMUSG00000099583 ENSMUST00000105105 H3c4 protein_coding Interval_127489 chr5 104442273 104444571 + 0 NA Intergenic Intergenic 8280 ENSMUSG00000029304.14 ENSMUSG00000029304 ENSMUST00000112747 Spp1 protein_coding Interval_135747 chr6 46537327 46538245 + 0 NA intron (ENSMUSG00000039419.17, intron 13 of 23) protein_coding-intron (ENSMUSG00000039419.17, intron 13 of 23) -6992 ENSMUSG00000079575.3 ENSMUSG00000079575 ENSMUST00000182751 Rbpj-ps3 processed_pseudogene Interval_170155 chr9 105657797 105658555 + 0 NA promoter-TSS (ENSMUSG00000032571.14) protein_coding-promoter-TSS (ENSMUSG00000032571.14) 15375 ENSMUSG00000084659.1 ENSMUSG00000084659 ENSMUST00000122710 Gm22720 snRNA Interval_170949 chr9 113156176 113157209 + 0 NA Intergenic Intergenic 33123 ENSMUSG00000111235.1 ENSMUSG00000111235 ENSMUST00000213839 Gm4657 lincRNA Interval_58737 chr15 37563008 37563224 + 0 NA intron (ENSMUSG00000115157.1, intron 6 of 7) protein_coding-intron (ENSMUSG00000051359.15, intron 4 of 6) -1286 ENSMUSG00000115095.1 ENSMUSG00000115095 ENSMUST00000228636 Gm49311 TEC Interval_31437 chr11 100654031 100654457 + 0 NA intron (ENSMUSG00000014198.15, intron 2 of 2) protein_coding-intron (ENSMUSG00000014198.15, intron 1 of 4) -11127 ENSMUSG00000109112.1 ENSMUSG00000109112 ENSMUST00000207052 Gm44544 unitary_pseudogene Interval_70058 chr17 5059434 5059833 + 0 NA intron (ENSMUSG00000069729.14, intron 2 of 19) protein_coding-intron (ENSMUSG00000069729.14, intron 2 of 18) 52477 ENSMUSG00000081783.2 ENSMUSG00000081783 ENSMUST00000122283 Gm15599 processed_pseudogene Interval_43040 chr13 23436053 23438746 + 0 NA Intergenic Intergenic -6573 ENSMUSG00000085024.1 ENSMUSG00000085024 ENSMUST00000153753 C230035I16Rik lincRNA Interval_156188 chr8 45796124 45796718 + 0 NA exon (ENSMUSG00000031626.18, exon 18 of 26) protein_coding-exon (ENSMUSG00000031626.18, exon 18 of 26) -9232 ENSMUSG00000031626.18 ENSMUSG00000031626 ENSMUST00000156549 Sorbs2 protein_coding Interval_156181 chr8 45704933 45705842 + 0 NA intron (ENSMUSG00000031626.18, intron 2 of 9) protein_coding-intron (ENSMUSG00000031626.18, intron 2 of 25) -73841 ENSMUSG00000110411.1 ENSMUSG00000110411 ENSMUST00000209931 Gm45457 TEC Interval_130676 chr5 129657355 129658317 + 0 NA exon (ENSMUSG00000051034.7, exon 3 of 3) protein_coding-exon (ENSMUSG00000051034.7, exon 3 of 3) 12263 ENSMUSG00000051034.7 ENSMUSG00000051034 ENSMUST00000049778 Zfp11 protein_coding Interval_159277 chr8 92723462 92724627 + 0 NA Intergenic Intergenic -7069 ENSMUSG00000078967.5 ENSMUSG00000078967 ENSMUST00000181181 Gapdh-ps16 processed_pseudogene Interval_138992 chr6 94061552 94061859 + 0 NA intron (ENSMUSG00000045095.16, intron 1 of 24) protein_coding-intron (ENSMUSG00000045095.16, intron 1 of 21) -149201 ENSMUSG00000045095.16 ENSMUSG00000045095 ENSMUST00000203034 Magi1 protein_coding Interval_66673 chr16 36033867 36034175 + 0 NA TTS (ENSMUSG00000022905.12) protein_coding-TTS (ENSMUSG00000022905.12) -7169 ENSMUSG00000034379.9 ENSMUSG00000034379 ENSMUST00000042203 Wdr5b protein_coding Interval_24106 chr11 30340266 30340502 + 0 NA Intergenic Intergenic -72209 ENSMUSG00000020315.18 ENSMUSG00000020315 ENSMUST00000149117 Sptbn1 protein_coding Interval_84702 chr19 15615090 15615438 + 0 NA Intergenic Intergenic -64740 ENSMUSG00000094850.1 ENSMUSG00000094850 ENSMUST00000083389 Gm24319 snRNA Interval_15819 chr10 57566366 57567047 + 0 NA Intergenic Intergenic -34296 ENSMUSG00000019877.10 ENSMUSG00000019877 ENSMUST00000164400 Serinc1 protein_coding Interval_166718 chr9 62232683 62233124 + 0 NA Intergenic Intergenic -8767 ENSMUSG00000110826.1 ENSMUSG00000110826 ENSMUST00000217557 Gm47262 lincRNA Interval_39918 chr12 99754855 99756431 + 0 NA intron (ENSMUSG00000021176.6, intron 6 of 6) protein_coding-intron (ENSMUSG00000021176.6, intron 5 of 5) 6611 ENSMUSG00000113877.1 ENSMUSG00000113877 ENSMUST00000220762 Gm47208 TEC Interval_108074 chr3 121368389 121370967 + 0 NA Intergenic Intergenic 11001 ENSMUSG00000106455.1 ENSMUSG00000106455 ENSMUST00000197896 Gm5711 processed_pseudogene Interval_7199 chr1 127765614 127765914 + 0 NA intron (ENSMUSG00000026348.7, intron 2 of 3) protein_coding-intron (ENSMUSG00000026348.7, intron 8 of 9) 8290 ENSMUSG00000102014.1 ENSMUSG00000102014 ENSMUST00000185310 2900009J06Rik antisense Interval_136951 chr6 65046835 65047045 + 0 NA intron (ENSMUSG00000029920.9, intron 3 of 3) protein_coding-intron (ENSMUSG00000029920.9, intron 2 of 23) 4273 ENSMUSG00000029920.9 ENSMUSG00000029920 ENSMUST00000203104 Smarcad1 protein_coding Interval_117848 chr4 126600114 126600802 + 0 NA Intergenic Intergenic -9396 ENSMUSG00000073755.4 ENSMUSG00000073755 ENSMUST00000164362 5730409E04Rik protein_coding Interval_91155 chr2 35533927 35534142 + 0 NA Intergenic Intergenic 24451 ENSMUSG00000086555.2 ENSMUSG00000086555 ENSMUST00000134679 Gm13446 processed_transcript Interval_72323 chr17 29199127 29200193 + 0 NA intron (ENSMUSG00000024008.16, intron 9 of 13) protein_coding-intron (ENSMUSG00000024008.16, intron 8 of 20) -23636 ENSMUSG00000117610.1 ENSMUSG00000117610 ENSMUST00000235091 Gm50054 TEC Interval_30702 chr11 95994830 95995104 + 0 NA intron (ENSMUSG00000013415.9, intron 2 of 14) protein_coding-intron (ENSMUSG00000013415.9, intron 2 of 14) -10922 ENSMUSG00000099928.1 ENSMUSG00000099928 ENSMUST00000191263 Gm29202 antisense Interval_51850 chr14 32908208 32908659 + 0 NA intron (ENSMUSG00000050666.14, intron 5 of 7) protein_coding-intron (ENSMUSG00000050666.14, intron 5 of 7) 10714 ENSMUSG00000098236.1 ENSMUSG00000098236 ENSMUST00000182832 Gm7734 processed_pseudogene Interval_150581 chr7 112620901 112621118 + 0 NA intron (ENSMUSG00000085945.3, intron 2 of 3) bidirectional_promoter_lncRNA-intron (ENSMUSG00000085945.3, intron 2 of 3) -2784 ENSMUSG00000093002.1 ENSMUSG00000093002 ENSMUST00000175261 Gm24154 snoRNA Interval_37565 chr12 69907696 69908840 + 0 NA intron (ENSMUSG00000021066.9, intron 1 of 2) protein_coding-intron (ENSMUSG00000021066.9, intron 2 of 14) 536 ENSMUSG00000021066.9 ENSMUSG00000021066 ENSMUST00000220935 Atl1 protein_coding Interval_77967 chr18 6210444 6211204 + 0 NA exon (ENSMUSG00000006740.14, exon 6 of 9) protein_coding-exon (ENSMUSG00000006740.14, exon 6 of 9) -3089 ENSMUSG00000091165.1 ENSMUSG00000091165 ENSMUST00000168187 Gm17036 antisense Interval_109533 chr3 144171425 144172541 + 0 NA Intergenic Intergenic 27279 ENSMUSG00000104969.1 ENSMUSG00000104969 ENSMUST00000198564 Gm43445 sense_intronic Interval_61313 chr15 80778994 80779207 + 0 NA intron (ENSMUSG00000047888.10, intron 3 of 24) protein_coding-intron (ENSMUSG00000047888.10, intron 3 of 24) 66829 ENSMUSG00000116480.1 ENSMUSG00000116480 ENSMUST00000230620 Gm49512 sense_intronic Interval_164673 chr9 40478746 40479813 + 0 NA intron (ENSMUSG00000040111.17, intron 1 of 20) protein_coding-intron (ENSMUSG00000040111.17, intron 1 of 20) -8441 ENSMUSG00000111515.1 ENSMUSG00000111515 ENSMUST00000215697 Gm5055 processed_pseudogene Interval_54905 chr14 76144147 76144375 + 0 NA Intergenic Intergenic 33370 ENSMUSG00000022009.1 ENSMUSG00000022009 ENSMUST00000022586 Nufip1 protein_coding Interval_39907 chr12 99576835 99577512 + 0 NA intron (ENSMUSG00000097917.2, intron 2 of 3) bidirectional_promoter_lncRNA-intron (ENSMUSG00000097917.2, intron 2 of 3) 7433 ENSMUSG00000114190.1 ENSMUSG00000114190 ENSMUST00000222451 4930556H04Rik TEC Interval_95064 chr2 103656087 103656333 + 0 NA intron (ENSMUSG00000032724.5, intron 1 of 16) protein_coding-intron (ENSMUSG00000032724.5, intron 1 of 16) -58825 ENSMUSG00000032724.5 ENSMUSG00000032724 ENSMUST00000131122 Abtb2 protein_coding Interval_158301 chr8 80936684 80937819 + 0 NA exon (ENSMUSG00000098001.1, exon 2 of 2) lincRNA-exon (ENSMUSG00000098001.1, exon 2 of 2) 1416 ENSMUSG00000098001.1 ENSMUSG00000098001 ENSMUST00000182891 Gm27048 lincRNA Interval_134850 chr6 32480894 32481113 + 0 NA intron (ENSMUSG00000029765.12, intron 3 of 31) protein_coding-intron (ENSMUSG00000029765.12, intron 3 of 31) 29833 ENSMUSG00000086675.1 ENSMUSG00000086675 ENSMUST00000152538 Plxna4os2 antisense Interval_11563 chr1 182747391 182749295 + 0 NA exon (ENSMUSG00000043429.7, exon 1 of 1) protein_coding-exon (ENSMUSG00000043429.7, exon 1 of 1) 837 ENSMUSG00000043429.7 ENSMUSG00000043429 ENSMUST00000060041 Ccdc185 protein_coding Interval_162437 chr8 128718808 128719510 + 0 NA intron (ENSMUSG00000025809.15, intron 8 of 14) protein_coding-intron (ENSMUSG00000025809.15, intron 9 of 15) -5174 ENSMUSG00000025809.15 ENSMUSG00000025809 ENSMUST00000149116 Itgb1 protein_coding Interval_5689 chr1 90937005 90937256 + 0 NA intron (ENSMUSG00000026303.6, intron 8 of 15) protein_coding-intron (ENSMUSG00000026303.6, intron 8 of 15) -2039 ENSMUSG00000026303.6 ENSMUSG00000026303 ENSMUST00000136220 Mlph protein_coding Interval_85230 chr19 24032462 24033085 + 0 NA Intergenic Intergenic 27993 ENSMUSG00000117820.1 ENSMUSG00000117820 ENSMUST00000235965 Gm50305 processed_pseudogene Interval_125423 chr5 66989100 66989915 + 0 NA intron (ENSMUSG00000086964.1, intron 2 of 2) protein_coding-intron (ENSMUSG00000037736.20, intron 3 of 20) 1700 ENSMUSG00000086964.1 ENSMUSG00000086964 ENSMUST00000150616 Gm15948 antisense Interval_77344 chr17 88092356 88092592 + 0 NA Intergenic Intergenic -27231 ENSMUSG00000005371.15 ENSMUSG00000005371 ENSMUST00000235056 Fbxo11 protein_coding Interval_104123 chr3 58817075 58817842 + 0 NA intron (ENSMUSG00000101860.4, intron 3 of 11) protein_coding-intron (ENSMUSG00000101860.4, intron 3 of 11) -5515 ENSMUSG00000101860.4 ENSMUSG00000101860 ENSMUST00000191233 Mindy4b-ps protein_coding Interval_7375 chr1 130709996 130710237 + 0 NA intron (ENSMUSG00000026409.14, intron 1 of 15) protein_coding-intron (ENSMUSG00000026409.14, intron 1 of 12) 4460 ENSMUSG00000026409.14 ENSMUSG00000026409 ENSMUST00000186777 Pfkfb2 protein_coding Interval_63483 chr15 101366386 101366630 + 0 NA intron (ENSMUSG00000116114.1, intron 1 of 3) protein_coding-intron (ENSMUSG00000037185.9, intron 1 of 8) -1930 ENSMUSG00000037185.9 ENSMUSG00000037185 ENSMUST00000229267 Krt80 protein_coding Interval_169949 chr9 103145323 103147576 + 0 NA intron (ENSMUSG00000032549.7, intron 2 of 7) protein_coding-intron (ENSMUSG00000032549.7, intron 2 of 7) 26081 ENSMUSG00000102461.1 ENSMUSG00000102461 ENSMUST00000195473 Gm37166 TEC Interval_3684 chr1 60818582 60818857 + 0 NA Intergenic Intergenic 9603 ENSMUSG00000083355.1 ENSMUSG00000083355 ENSMUST00000122024 Gm11581 processed_pseudogene Interval_111131 chr4 12609647 12609891 + 0 NA exon (ENSMUSG00000104211.1, exon 1 of 1) TEC-exon (ENSMUSG00000104211.1, exon 1 of 1) 12381 ENSMUSG00000104211.1 ENSMUSG00000104211 ENSMUST00000194728 Gm37985 TEC Interval_50188 chr14 9002929 9003399 + 0 NA Intergenic Intergenic -76984 ENSMUSG00000114464.1 ENSMUSG00000114464 ENSMUST00000225474 Gm18071 processed_pseudogene Interval_153441 chr7 144821739 144822824 + 0 NA Intergenic Intergenic -15802 ENSMUSG00000031074.14 ENSMUSG00000031074 ENSMUST00000105898 Fgf3 protein_coding Interval_8426 chr1 139162866 139163257 + 0 NA intron (ENSMUSG00000056268.15, intron 17 of 19) protein_coding-intron (ENSMUSG00000056268.15, intron 18 of 20) 7909 ENSMUSG00000102243.1 ENSMUSG00000102243 ENSMUST00000191655 Gm37718 TEC Interval_67020 chr16 40665869 40666943 + 0 NA intron (ENSMUSG00000061080.11, intron 1 of 1) protein_coding-intron (ENSMUSG00000061080.11, intron 1 of 8) -298469 ENSMUSG00000098472.1 ENSMUSG00000098472 ENSMUST00000184367 Gm27887 miRNA Interval_146750 chr7 49911925 49912153 + 0 NA exon (ENSMUSG00000039728.15, exon 2 of 16) protein_coding-exon (ENSMUSG00000039728.15, exon 2 of 16) 1740 ENSMUSG00000039728.15 ENSMUSG00000039728 ENSMUST00000107605 Slc6a5 protein_coding Interval_142499 chr6 142888106 142889609 + 0 NA intron (ENSMUSG00000030283.7, intron 2 of 4) protein_coding-intron (ENSMUSG00000030283.7, intron 2 of 4) 74472 ENSMUSG00000072683.3 ENSMUSG00000072683 ENSMUST00000159599 Gm7457 processed_transcript Interval_85182 chr19 23479054 23481863 + 0 NA Intergenic Intergenic -32016 ENSMUSG00000033207.7 ENSMUSG00000033207 ENSMUST00000236349 Mamdc2 protein_coding Interval_61471 chr15 81831096 81832052 + 0 NA Intergenic Intergenic 12139 ENSMUSG00000069439.3 ENSMUSG00000069439 ENSMUST00000092020 Gm8444 processed_pseudogene Interval_140148 chr6 114852210 114852909 + 0 NA intron (ENSMUSG00000030314.16, intron 20 of 20) protein_coding-intron (ENSMUSG00000030314.16, intron 18 of 18) 63169 ENSMUSG00000107395.1 ENSMUSG00000107395 ENSMUST00000203217 Gm44331 processed_pseudogene Interval_55112 chr14 78216116 78217967 + 0 NA Intergenic Intergenic 17668 ENSMUSG00000115552.1 ENSMUSG00000115552 ENSMUST00000228898 Gm48959 processed_pseudogene Interval_122948 chr5 27736994 27737758 + 0 NA Intergenic Intergenic 54315 ENSMUSG00000002221.11 ENSMUSG00000002221 ENSMUST00000199714 Paxip1 protein_coding Interval_154942 chr8 25200940 25202056 + 0 NA promoter-TSS (ENSMUSG00000065954.11) protein_coding-promoter-TSS (ENSMUSG00000065954.11) -49 ENSMUSG00000065954.11 ENSMUSG00000065954 ENSMUST00000211218 Tacc1 protein_coding Interval_125585 chr5 72215497 72215737 + 0 NA intron (ENSMUSG00000046808.17, intron 1 of 2) polymorphic_pseudogene-intron (ENSMUSG00000046808.17, intron 1 of 22) 12288 ENSMUSG00000046808.17 ENSMUSG00000046808 ENSMUST00000146393 Atp10d polymorphic_pseudogene Interval_140490 chr6 118777606 118778115 + 0 NA intron (ENSMUSG00000051331.16, intron 1 of 44) protein_coding-intron (ENSMUSG00000051331.16, intron 4 of 46) -57040 ENSMUSG00000089115.1 ENSMUSG00000089115 ENSMUST00000158490 Gm25905 snRNA Interval_85927 chr19 33380335 33380568 + 0 NA intron (ENSMUSG00000071573.14, intron 2 of 4) polymorphic_pseudogene-intron (ENSMUSG00000071573.14, intron 4 of 6) 11844 ENSMUSG00000071573.14 ENSMUSG00000071573 ENSMUST00000163093 Rnls polymorphic_pseudogene Interval_111792 chr4 29171620 29172628 + 0 NA Intergenic Intergenic -23396 ENSMUSG00000082486.1 ENSMUSG00000082486 ENSMUST00000117609 Gm11919 processed_pseudogene Interval_70123 chr17 5482217 5482787 + 0 NA exon (ENSMUSG00000116691.1, exon 1 of 3) processed_pseudogene-exon (ENSMUSG00000116691.1, exon 1 of 3) 462 ENSMUSG00000116691.1 ENSMUSG00000116691 ENSMUST00000231799 Gm8363 processed_pseudogene Interval_33539 chr11 117101270 117101743 + 0 NA Intergenic Intergenic -4479 ENSMUSG00000087057.7 ENSMUSG00000087057 ENSMUST00000147186 Gm11730 antisense Interval_152829 chr7 138453958 138455940 + 0 NA Intergenic Intergenic 41172 ENSMUSG00000110354.1 ENSMUSG00000110354 ENSMUST00000211580 Gm45686 lincRNA Interval_26688 chr11 59731951 59734055 + 0 NA promoter-TSS (ENSMUSG00000086330.7) processed_transcript-promoter-TSS (ENSMUSG00000086330.7) 7151 ENSMUSG00000086330.7 ENSMUSG00000086330 ENSMUST00000153431 1700007J10Rik processed_transcript Interval_85431 chr19 25962543 25963142 + 0 NA Intergenic Intergenic 83625 ENSMUSG00000118016.1 ENSMUSG00000118016 ENSMUST00000237184 1700048O14Rik processed_transcript Interval_102540 chr3 27604460 27604834 + 0 NA intron (ENSMUSG00000039286.12, intron 4 of 26) protein_coding-intron (ENSMUSG00000039286.12, intron 3 of 25) -19652 ENSMUSG00000092695.1 ENSMUSG00000092695 ENSMUST00000174954 Mir3092 miRNA Interval_42752 chr13 19056839 19057068 + 0 NA intron (ENSMUSG00000021314.13, intron 2 of 20) protein_coding-intron (ENSMUSG00000021314.13, intron 2 of 20) 943 ENSMUSG00000114080.1 ENSMUSG00000114080 ENSMUST00000221738 Gm47661 antisense Interval_82336 chr18 70970180 70970927 + 0 NA Intergenic Intergenic -62902 ENSMUSG00000118271.1 ENSMUSG00000118271 ENSMUST00000236972 Gm50262 processed_pseudogene Interval_126718 chr5 92252260 92253373 + 0 NA intron (ENSMUSG00000029410.11, intron 2 of 16) protein_coding-intron (ENSMUSG00000029410.11, intron 1 of 15) 19732 ENSMUSG00000029413.14 ENSMUSG00000029413 ENSMUST00000161212 Naaa protein_coding Interval_96662 chr2 126958546 126958896 + 0 NA Intergenic Intergenic -38376 ENSMUSG00000027366.12 ENSMUSG00000027366 ENSMUST00000125592 Sppl2a protein_coding Interval_108747 chr3 131019249 131019942 + 0 NA Intergenic Intergenic 6775 ENSMUSG00000104859.1 ENSMUSG00000104859 ENSMUST00000197848 A430072C10Rik TEC Interval_65976 chr16 30655548 30657376 + 0 NA Intergenic Intergenic 56739 ENSMUSG00000046546.3 ENSMUSG00000046546 ENSMUST00000059078 Fam43a protein_coding Interval_102417 chr3 25125891 25126101 + 0 NA intron (ENSMUSG00000102758.3, intron 1 of 2) protein_coding-intron (ENSMUSG00000102758.3, intron 1 of 2) -18072 ENSMUSG00000102876.1 ENSMUSG00000102876 ENSMUST00000194368 Gm37136 TEC Interval_174063 chrX 133981261 133981893 + 0 NA intron (ENSMUSG00000031255.14, intron 1 of 13) protein_coding-intron (ENSMUSG00000031255.14, intron 1 of 16) 232 ENSMUSG00000031255.14 ENSMUSG00000031255 ENSMUST00000174542 Sytl4 protein_coding Interval_166536 chr9 60706024 60706260 + 0 NA Intergenic Intergenic -6847 ENSMUSG00000034839.5 ENSMUSG00000034839 ENSMUST00000038407 Larp6 protein_coding Interval_113467 chr4 55203784 55204471 + 0 NA intron (ENSMUSG00000087614.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000087614.1, intron 1 of 2) 41119 ENSMUSG00000081177.1 ENSMUSG00000081177 ENSMUST00000118033 Gm12509 processed_pseudogene Interval_68824 chr16 87404618 87405477 + 0 NA intron (ENSMUSG00000052299.9, intron 17 of 29) protein_coding-intron (ENSMUSG00000052299.9, intron 17 of 29) 13997 ENSMUSG00000065647.1 ENSMUSG00000065647 ENSMUST00000083713 Gm25896 snoRNA Interval_148864 chr7 89437454 89438344 + 0 NA intron (ENSMUSG00000109311.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000109311.1, intron 1 of 1) 11593 ENSMUSG00000109311.1 ENSMUSG00000109311 ENSMUST00000207391 AI314278 lincRNA Interval_146726 chr7 49754746 49754990 + 0 NA Intergenic Intergenic -4247 ENSMUSG00000039745.8 ENSMUSG00000039745 ENSMUST00000207895 Htatip2 protein_coding Interval_55240 chr14 79573304 79574531 + 0 NA intron (ENSMUSG00000036461.16, intron 7 of 7) protein_coding-intron (ENSMUSG00000036461.16, intron 8 of 8) -11625 ENSMUSG00000093684.2 ENSMUSG00000093684 ENSMUST00000176930 Gm27857 miRNA Interval_125400 chr5 66697255 66697899 + 0 NA Intergenic Intergenic 8695 ENSMUSG00000107300.1 ENSMUSG00000107300 ENSMUST00000202376 Gm43279 TEC Interval_157787 chr8 73186741 73187974 + 0 NA intron (ENSMUSG00000004383.18, intron 3 of 15) protein_coding-intron (ENSMUSG00000004383.18, intron 2 of 14) -12099 ENSMUSG00000089447.1 ENSMUSG00000089447 ENSMUST00000158822 Gm22532 snoRNA Interval_28764 chr11 78170488 78172290 + 0 NA exon (ENSMUSG00000017405.14, exon 3 of 4) protein_coding-exon (ENSMUSG00000017405.14, exon 3 of 4) 5222 ENSMUSG00000017405.14 ENSMUSG00000017405 ENSMUST00000148154 Nek8 protein_coding Interval_134794 chr6 31599862 31601787 + 0 NA Intergenic Intergenic 25857 ENSMUSG00000086732.1 ENSMUSG00000086732 ENSMUST00000150540 Gm6117 lincRNA Interval_35692 chr12 27758913 27760338 + 0 NA Intergenic Intergenic 127822 ENSMUSG00000077344.1 ENSMUSG00000077344 ENSMUST00000104156 Gm24326 snoRNA Interval_101525 chr3 3934822 3935909 + 0 NA Intergenic Intergenic -3779 ENSMUSG00000103224.1 ENSMUSG00000103224 ENSMUST00000195017 Gm2077 processed_pseudogene Interval_4210 chr1 71629171 71630140 + 0 NA intron (ENSMUSG00000026193.15, intron 14 of 43) protein_coding-intron (ENSMUSG00000026193.15, intron 14 of 45) -23233 ENSMUSG00000073652.10 ENSMUSG00000073652 ENSMUST00000125934 Apol7d antisense Interval_136845 chr6 61316073 61316967 + 0 NA intron (ENSMUSG00000039578.17, intron 1 of 3) protein_coding-intron (ENSMUSG00000039578.17, intron 2 of 9) -84087 ENSMUSG00000107757.1 ENSMUSG00000107757 ENSMUST00000204456 Gm43898 processed_pseudogene Interval_100801 chr2 172595738 172596283 + 0 NA Intergenic Intergenic 45019 ENSMUSG00000028640.11 ENSMUSG00000028640 ENSMUST00000142633 Tfap2c protein_coding Interval_52283 chr14 43860524 43861140 + 0 NA exon (ENSMUSG00000115272.1, exon 4 of 4) lincRNA-exon (ENSMUSG00000115272.1, exon 4 of 4) -4085 ENSMUSG00000093889.1 ENSMUSG00000093889 ENSMUST00000178173 Ang-ps2 unprocessed_pseudogene Interval_163149 chr9 15794410 15794734 + 0 NA Intergenic Intergenic -28575 ENSMUSG00000111217.1 ENSMUSG00000111217 ENSMUST00000214799 Gm48711 processed_pseudogene Interval_58927 chr15 40113971 40115019 + 0 NA intron (ENSMUSG00000115142.1, intron 2 of 2) lincRNA-intron (ENSMUSG00000115142.1, intron 2 of 2) -19870 ENSMUSG00000094112.2 ENSMUSG00000094112 ENSMUST00000179120 9330182O14Rik protein_coding Interval_146458 chr7 46062437 46063100 + 0 NA intron (ENSMUSG00000030835.6, intron 17 of 30) protein_coding-intron (ENSMUSG00000030835.6, intron 17 of 30) 8608 ENSMUSG00000030835.6 ENSMUSG00000030835 ENSMUST00000182305 Nomo1 protein_coding Interval_17427 chr10 76562207 76562541 + 0 NA promoter-TSS (ENSMUSG00000009115.5) protein_coding-promoter-TSS (ENSMUSG00000009115.5) 65 ENSMUSG00000009115.5 ENSMUSG00000009115 ENSMUST00000105414 Spatc1l protein_coding Interval_136246 chr6 52259187 52261448 + 0 NA promoter-TSS (ENSMUSG00000098484.1) misc_RNA-promoter-TSS (ENSMUSG00000098484.1) 485 ENSMUSG00000038203.18 ENSMUSG00000038203 ENSMUST00000114416 Hoxa13 protein_coding Interval_51849 chr14 32901366 32901575 + 0 NA intron (ENSMUSG00000050666.14, intron 4 of 7) protein_coding-intron (ENSMUSG00000050666.14, intron 4 of 7) 3751 ENSMUSG00000098236.1 ENSMUSG00000098236 ENSMUST00000182832 Gm7734 processed_pseudogene Interval_34960 chr12 15672289 15672471 + 0 NA intron (ENSMUSG00000098158.2, intron 1 of 4) transcribed_processed_pseudogene-intron (ENSMUSG00000098158.2, intron 1 of 4) -53533 ENSMUSG00000098158.2 ENSMUSG00000098158 ENSMUST00000182234 Gm4804 transcribed_processed_pseudogene Interval_14312 chr10 30745322 30746050 + 0 NA intron (ENSMUSG00000039697.16, intron 1 of 13) protein_coding-intron (ENSMUSG00000039697.16, intron 2 of 15) -1724 ENSMUSG00000110894.1 ENSMUSG00000110894 ENSMUST00000215097 Gm48335 TEC Interval_159443 chr8 94771571 94772697 + 0 NA promoter-TSS (ENSMUSG00000031778.13) protein_coding-promoter-TSS (ENSMUSG00000031778.13) -70 ENSMUSG00000031778.13 ENSMUSG00000031778 ENSMUST00000150307 Cx3cl1 protein_coding Interval_12935 chr10 8287464 8288537 + 0 NA intron (ENSMUSG00000047712.8, intron 2 of 6) protein_coding-intron (ENSMUSG00000047712.8, intron 5 of 7) 14242 ENSMUSG00000047712.8 ENSMUSG00000047712 ENSMUST00000061601 Ust protein_coding Interval_20360 chr10 117106535 117106878 + 0 NA intron (ENSMUSG00000020170.4, intron 1 of 5) protein_coding-intron (ENSMUSG00000020170.4, intron 1 of 9) 41789 ENSMUSG00000020170.4 ENSMUSG00000020170 ENSMUST00000219104 Frs2 protein_coding Interval_56624 chr14 120920913 120922102 + 0 NA intron (ENSMUSG00000030662.10, intron 3 of 25) protein_coding-intron (ENSMUSG00000030662.10, intron 3 of 25) 5660 ENSMUSG00000030662.10 ENSMUSG00000030662 ENSMUST00000228277 Ipo5 protein_coding Interval_172508 chrX 22154419 22155046 + 0 NA Intergenic Intergenic 50791 ENSMUSG00000082175.1 ENSMUSG00000082175 ENSMUST00000120571 Gm14563 processed_pseudogene Interval_41777 chr12 119025817 119026525 + 0 NA Intergenic Intergenic 41259 ENSMUSG00000114030.1 ENSMUSG00000114030 ENSMUST00000221798 Gm18921 processed_pseudogene Interval_85264 chr19 24230530 24230940 + 0 NA Intergenic Intergenic 47436 ENSMUSG00000059363.10 ENSMUSG00000059363 ENSMUST00000132688 Fxn protein_coding Interval_538 chr1 7072929 7073389 + 0 NA Intergenic Intergenic 37244 ENSMUSG00000103629.1 ENSMUSG00000103629 ENSMUST00000195648 Gm5694 processed_pseudogene Interval_51388 chr14 27174365 27175526 + 0 NA intron (ENSMUSG00000021895.10, intron 3 of 13) protein_coding-intron (ENSMUSG00000021895.10, intron 3 of 13) -35452 ENSMUSG00000114349.1 ENSMUSG00000114349 ENSMUST00000225776 Gm7591 processed_pseudogene Interval_114235 chr4 69625455 69627213 + 0 NA Intergenic Intergenic -65644 ENSMUSG00000082998.3 ENSMUSG00000082998 ENSMUST00000117230 Gm11221 processed_pseudogene Interval_72363 chr17 29427670 29429793 + 0 NA Intergenic Intergenic 6026 ENSMUSG00000117575.1 ENSMUSG00000117575 ENSMUST00000234181 Gm36486 processed_transcript Interval_98040 chr2 147060307 147060679 + 0 NA promoter-TSS (ENSMUSG00000027433.5) protein_coding-promoter-TSS (ENSMUSG00000027433.5) 24952 ENSMUSG00000054160.2 ENSMUSG00000054160 ENSMUST00000067020 Nkx2-4 protein_coding Interval_25722 chr11 51127814 51128043 + 0 NA Intergenic Intergenic -14604 ENSMUSG00000083312.1 ENSMUSG00000083312 ENSMUST00000120114 Olfr1374-ps1 unprocessed_pseudogene Interval_79981 chr18 36414766 36416914 + 0 NA intron (ENSMUSG00000024346.6, intron 2 of 2) protein_coding-intron (ENSMUSG00000024346.6, intron 3 of 3) 38684 ENSMUSG00000024346.6 ENSMUSG00000024346 ENSMUST00000237499 Pfdn1 protein_coding Interval_46001 chr13 59906941 59907159 + 0 NA promoter-TSS (ENSMUSG00000114490.1) lincRNA-promoter-TSS (ENSMUSG00000114490.1) 8738 ENSMUSG00000114490.1 ENSMUSG00000114490 ENSMUST00000223935 Gm19866 lincRNA Interval_88236 chr19 60905622 60906019 + 0 NA intron (ENSMUSG00000003228.9, intron 1 of 4) protein_coding-intron (ENSMUSG00000003228.9, intron 1 of 15) 15357 ENSMUSG00000003228.9 ENSMUSG00000003228 ENSMUST00000236876 Grk5 protein_coding Interval_159545 chr8 95358459 95359126 + 0 NA intron (ENSMUSG00000031790.8, intron 1 of 9) protein_coding-intron (ENSMUSG00000031790.8, intron 1 of 9) -11079 ENSMUSG00000031790.8 ENSMUSG00000031790 ENSMUST00000212235 Mmp15 protein_coding Interval_10464 chr1 171133103 171134369 + 0 NA intron (ENSMUSG00000058076.12, intron 5 of 5) protein_coding-intron (ENSMUSG00000058076.12, intron 4 of 4) 10562 ENSMUSG00000026649.14 ENSMUSG00000026649 ENSMUST00000124157 Cfap126 protein_coding Interval_12483 chr1 194033996 194034728 + 0 NA Intergenic Intergenic 167353 ENSMUSG00000104182.1 ENSMUSG00000104182 ENSMUST00000194272 Gm21362 processed_pseudogene Interval_6058 chr1 95272592 95273783 + 0 NA Intergenic Intergenic -16377 ENSMUSG00000099592.1 ENSMUSG00000099592 ENSMUST00000190584 Gm5264 processed_pseudogene Interval_149388 chr7 98057203 98057683 + 0 NA exon (ENSMUSG00000030761.16, exon 39 of 48) protein_coding-exon (ENSMUSG00000030761.16, exon 39 of 48) 33685 ENSMUSG00000030761.16 ENSMUSG00000030761 ENSMUST00000131632 Myo7a protein_coding Interval_103646 chr3 51380490 51380890 + 0 NA intron (ENSMUSG00000102544.1, intron 3 of 3) lincRNA-intron (ENSMUSG00000102544.1, intron 3 of 3) 2614 ENSMUSG00000102544.1 ENSMUSG00000102544 ENSMUST00000195545 Gm5103 lincRNA Interval_119316 chr4 136834928 136836904 + 0 NA promoter-TSS (ENSMUSG00000028664.14) protein_coding-promoter-TSS (ENSMUSG00000028664.14) 50271 ENSMUSG00000036905.8 ENSMUSG00000036905 ENSMUST00000046384 C1qb protein_coding Interval_75353 chr17 66084003 66084964 + 0 NA intron (ENSMUSG00000024099.15, intron 5 of 7) protein_coding-intron (ENSMUSG00000024099.15, intron 6 of 8) -1611 ENSMUSG00000094158.1 ENSMUSG00000094158 ENSMUST00000083372 Gm23264 snRNA Interval_131052 chr5 134772647 134773657 + 0 NA intron (ENSMUSG00000107318.1, intron 1 of 4) antisense-intron (ENSMUSG00000107318.1, intron 1 of 4) 26110 ENSMUSG00000107318.1 ENSMUSG00000107318 ENSMUST00000200700 Gm30003 antisense Interval_160011 chr8 105727412 105727835 + 0 NA intron (ENSMUSG00000013150.15, intron 2 of 2) protein_coding-intron (ENSMUSG00000013150.15, intron 2 of 2) -19478 ENSMUSG00000013155.10 ENSMUSG00000013155 ENSMUST00000013299 Enkd1 protein_coding Interval_9771 chr1 162004863 162005646 + 0 NA promoter-TSS (ENSMUSG00000090260.1) antisense-promoter-TSS (ENSMUSG00000090260.1) 285 ENSMUSG00000090260.1 ENSMUSG00000090260 ENSMUST00000160555 2810442N19Rik antisense Interval_73623 chr17 41366952 41367378 + 0 NA Intergenic Intergenic 21168 ENSMUSG00000098030.1 ENSMUSG00000098030 ENSMUST00000182716 Gm6771 processed_pseudogene Interval_130054 chr5 123958869 123959171 + 0 NA intron (ENSMUSG00000061882.12, intron 10 of 12) protein_coding-intron (ENSMUSG00000061882.12, intron 10 of 12) -3608 ENSMUSG00000061882.12 ENSMUSG00000061882 ENSMUST00000197673 Ccdc62 protein_coding Interval_27929 chr11 70948519 70949325 + 0 NA promoter-TSS (ENSMUSG00000040667.11) protein_coding-promoter-TSS (ENSMUSG00000040667.11) 7991 ENSMUSG00000040667.11 ENSMUSG00000040667 ENSMUST00000145336 Nup88 protein_coding Interval_62420 chr15 92343999 92344782 + 0 NA promoter-TSS (ENSMUSG00000097068.2) lincRNA-promoter-TSS (ENSMUSG00000097068.2) 31 ENSMUSG00000097068.2 ENSMUSG00000097068 ENSMUST00000181901 Gm26760 lincRNA Interval_96355 chr2 121920997 121921258 + 0 NA intron (ENSMUSG00000060227.15, intron 7 of 7) protein_coding-intron (ENSMUSG00000060227.15, intron 8 of 9) 22320 ENSMUSG00000060227.15 ENSMUSG00000060227 ENSMUST00000136023 Casc4 protein_coding Interval_31816 chr11 103111547 103112938 + 0 NA TTS (ENSMUSG00000056938.16) protein_coding-TTS (ENSMUSG00000056938.16) -3989 ENSMUSG00000048878.6 ENSMUSG00000048878 ENSMUST00000053063 Hexim1 protein_coding Interval_15003 chr10 41829369 41831475 + 0 NA intron (ENSMUSG00000038332.13, intron 1 of 9) protein_coding-intron (ENSMUSG00000038332.13, intron 1 of 9) 3884 ENSMUSG00000111131.1 ENSMUSG00000111131 ENSMUST00000214902 9930024M15Rik TEC Interval_44210 chr13 42149480 42150560 + 0 NA intron (ENSMUSG00000021366.8, intron 3 of 3) protein_coding-intron (ENSMUSG00000021366.8, intron 3 of 8) -14302 ENSMUSG00000021366.8 ENSMUSG00000021366 ENSMUST00000220801 Hivep1 protein_coding Interval_87499 chr19 53070885 53072326 + 0 NA intron (ENSMUSG00000099988.7, intron 1 of 2) processed_transcript-intron (ENSMUSG00000099988.7, intron 1 of 2) -4638 ENSMUSG00000099988.7 ENSMUSG00000099988 ENSMUST00000236249 1700054A03Rik processed_transcript Interval_126975 chr5 98854385 98855945 + 0 NA exon (ENSMUSG00000029335.5, exon 1 of 3) protein_coding-exon (ENSMUSG00000029335.5, exon 1 of 3) 714 ENSMUSG00000029335.5 ENSMUSG00000029335 ENSMUST00000200388 Bmp3 protein_coding Interval_22948 chr11 17882402 17883829 + 0 NA Intergenic Intergenic 70760 ENSMUSG00000016984.7 ENSMUSG00000016984 ENSMUST00000076661 Etaa1 protein_coding Interval_162781 chr9 9051025 9051906 + 0 NA intron (ENSMUSG00000050730.17, intron 5 of 15) protein_coding-intron (ENSMUSG00000050730.17, intron 5 of 22) 79674 ENSMUSG00000078117.2 ENSMUSG00000078117 ENSMUST00000104915 Gm16485 TEC Interval_29304 chr11 82811395 82812912 + 0 NA TTS (ENSMUSG00000020696.18) protein_coding-TTS (ENSMUSG00000020696.18) 30960 ENSMUSG00000020697.16 ENSMUSG00000020697 ENSMUST00000172837 Lig3 protein_coding Interval_106817 chr3 101078677 101078995 + 0 NA promoter-TSS (ENSMUSG00000027864.9) protein_coding-promoter-TSS (ENSMUSG00000027864.9) -115 ENSMUSG00000027864.9 ENSMUSG00000027864 ENSMUST00000200065 Ptgfrn protein_coding Interval_70707 chr17 13699941 13701237 + 0 NA intron (ENSMUSG00000117063.1, intron 1 of 4) lincRNA-intron (ENSMUSG00000117063.1, intron 1 of 4) -17102 ENSMUSG00000085705.1 ENSMUSG00000085705 ENSMUST00000128138 Gm16046 lincRNA Interval_9688 chr1 161038899 161040910 + 0 NA promoter-TSS (ENSMUSG00000102864.1) antisense-promoter-TSS (ENSMUSG00000102864.1) -716 ENSMUSG00000102864.1 ENSMUSG00000102864 ENSMUST00000195700 Gm37634 antisense Interval_74155 chr17 46829078 46829854 + 0 NA intron (ENSMUSG00000036568.7, intron 4 of 11) protein_coding-intron (ENSMUSG00000036568.7, intron 3 of 10) 2848 ENSMUSG00000036568.7 ENSMUSG00000036568 ENSMUST00000233455 Bicral protein_coding Interval_28170 chr11 73422093 73422859 + 0 NA Intergenic Intergenic 6001 ENSMUSG00000055971.11 ENSMUSG00000055971 ENSMUST00000069790 Olfr378 protein_coding Interval_92049 chr2 52884981 52885546 + 0 NA intron (ENSMUSG00000036053.17, intron 1 of 26) protein_coding-intron (ENSMUSG00000036053.17, intron 1 of 26) 27403 ENSMUSG00000036053.17 ENSMUSG00000036053 ENSMUST00000050719 Fmnl2 protein_coding Interval_54619 chr14 72206008 72206350 + 0 NA Intergenic Intergenic -10483 ENSMUSG00000115061.1 ENSMUSG00000115061 ENSMUST00000228357 Gm49290 processed_pseudogene Interval_82002 chr18 67065423 67065652 + 0 NA Intergenic Intergenic -1041 ENSMUSG00000117815.1 ENSMUSG00000117815 ENSMUST00000237332 Gm50166 lincRNA Interval_128687 chr5 114716220 114717463 + 0 NA promoter-TSS (ENSMUSG00000002486.15) protein_coding-promoter-TSS (ENSMUSG00000002486.15) -721 ENSMUSG00000107340.1 ENSMUSG00000107340 ENSMUST00000202276 Gm42789 antisense Interval_81644 chr18 62804709 62804921 + 0 NA Intergenic Intergenic -48500 ENSMUSG00000041789.7 ENSMUSG00000041789 ENSMUST00000048109 2700046A07Rik lincRNA Interval_17478 chr10 77138182 77138870 + 0 NA TTS (ENSMUSG00000112612.1) processed_pseudogene-TTS (ENSMUSG00000112612.1) 1426 ENSMUSG00000112612.1 ENSMUSG00000112612 ENSMUST00000218871 Gm7775 processed_pseudogene Interval_130853 chr5 132617117 132617453 + 0 NA Intergenic Intergenic 71229 ENSMUSG00000105809.1 ENSMUSG00000105809 ENSMUST00000196866 Gm42626 lincRNA Interval_56811 chr14 122228911 122229501 + 0 NA TTS (ENSMUSG00000100585.1) antisense-TTS (ENSMUSG00000100585.1) 4448 ENSMUSG00000100585.1 ENSMUSG00000100585 ENSMUST00000187423 1700108J01Rik antisense Interval_79395 chr18 31628549 31628870 + 0 NA Intergenic Intergenic -5662 ENSMUSG00000024260.14 ENSMUSG00000024260 ENSMUST00000234772 Sap130 protein_coding Interval_149395 chr7 98110893 98112669 + 0 NA promoter-TSS (ENSMUSG00000030761.16) protein_coding-promoter-TSS (ENSMUSG00000030761.16) -20653 ENSMUSG00000030761.16 ENSMUSG00000030761 ENSMUST00000131632 Myo7a protein_coding Interval_153191 chr7 142267445 142268212 + 0 NA Intergenic Intergenic 6535 ENSMUSG00000056885.5 ENSMUSG00000056885 ENSMUST00000080669 Gm4559 protein_coding Interval_147373 chr7 66253808 66254109 + 0 NA intron (ENSMUSG00000015133.17, intron 2 of 2) protein_coding-intron (ENSMUSG00000015133.17, intron 2 of 2) 8512 ENSMUSG00000015133.17 ENSMUSG00000015133 ENSMUST00000154893 Lrrk1 protein_coding Interval_158200 chr8 79733138 79733380 + 0 NA intron (ENSMUSG00000036977.8, intron 4 of 4) protein_coding-intron (ENSMUSG00000036977.8, intron 4 of 4) 19154 ENSMUSG00000110202.1 ENSMUSG00000110202 ENSMUST00000211147 Gm45435 antisense Interval_24821 chr11 39728753 39728954 + 0 NA Intergenic Intergenic -1141 ENSMUSG00000083806.1 ENSMUSG00000083806 ENSMUST00000117479 Gm12131 processed_pseudogene Interval_30250 chr11 91944719 91945787 + 0 NA Intergenic Intergenic 79160 ENSMUSG00000093113.1 ENSMUSG00000093113 ENSMUST00000175372 Gm22702 miRNA Interval_88865 chr2 11790488 11790927 + 0 NA TTS (ENSMUSG00000047909.11) protein_coding-TTS (ENSMUSG00000047909.11) 7418 ENSMUSG00000047909.11 ENSMUSG00000047909 ENSMUST00000142622 Ankrd16 protein_coding Interval_92220 chr2 57079999 57080287 + 0 NA exon (ENSMUSG00000082578.1, exon 1 of 1) processed_pseudogene-exon (ENSMUSG00000082578.1, exon 1 of 1) 395 ENSMUSG00000082578.1 ENSMUSG00000082578 ENSMUST00000117926 Gm13527 processed_pseudogene Interval_78966 chr18 23309794 23311577 + 0 NA Intergenic Intergenic 94016 ENSMUSG00000117475.1 ENSMUSG00000117475 ENSMUST00000234562 Gm7788 processed_pseudogene Interval_159678 chr8 96747418 96747715 + 0 NA Intergenic Intergenic 91437 ENSMUSG00000077938.1 ENSMUSG00000077938 ENSMUST00000104745 Gm24132 miRNA Interval_65512 chr16 22953233 22953818 + 0 NA intron (ENSMUSG00000022877.9, intron 1 of 4) protein_coding-intron (ENSMUSG00000022877.9, intron 1 of 6) 2425 ENSMUSG00000022877.9 ENSMUSG00000022877 ENSMUST00000232422 Hrg protein_coding Interval_43140 chr13 24615867 24616677 + 0 NA intron (ENSMUSG00000036006.20, intron 1 of 12) protein_coding-intron (ENSMUSG00000036006.20, intron 1 of 13) -11505 ENSMUSG00000085603.3 ENSMUSG00000085603 ENSMUST00000127863 Gm11346 transcribed_processed_pseudogene Interval_153904 chr8 10936357 10936614 + 0 NA Intergenic Intergenic 6598 ENSMUSG00000109480.1 ENSMUSG00000109480 ENSMUST00000207377 Gm45042 processed_pseudogene Interval_131793 chr5 139912055 139913058 + 0 NA intron (ENSMUSG00000048988.8, intron 1 of 1) protein_coding-intron (ENSMUSG00000048988.8, intron 1 of 1) 4082 ENSMUSG00000048988.8 ENSMUSG00000048988 ENSMUST00000198608 Elfn1 protein_coding Interval_103778 chr3 52676949 52677557 + 0 NA Intergenic Intergenic 45502 ENSMUSG00000065926.1 ENSMUSG00000065926 ENSMUST00000083992 Gm22798 snRNA Interval_151704 chr7 126168559 126168942 + 0 NA TTS (ENSMUSG00000000131.15) protein_coding-TTS (ENSMUSG00000000131.15) 3105 ENSMUSG00000090559.1 ENSMUSG00000090559 ENSMUST00000165729 Gm17137 transcribed_processed_pseudogene Interval_121618 chr5 3949081 3949792 + 0 NA TTS (ENSMUSG00000040407.18) protein_coding-TTS (ENSMUSG00000040407.18) -39570 ENSMUSG00000105893.1 ENSMUSG00000105893 ENSMUST00000200591 Wdr46-ps processed_pseudogene Interval_45921 chr13 59314594 59315166 + 0 NA intron (ENSMUSG00000114240.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000114240.1, intron 1 of 1) 15363 ENSMUSG00000114240.1 ENSMUSG00000114240 ENSMUST00000224237 Gm47360 lincRNA Interval_15854 chr10 58413097 58413551 + 0 NA intron (ENSMUSG00000019920.18, intron 6 of 9) protein_coding-intron (ENSMUSG00000019920.18, intron 6 of 10) -33871 ENSMUSG00000003226.7 ENSMUSG00000003226 ENSMUST00000220131 Ranbp2 protein_coding Interval_158772 chr8 86243182 86243572 + 0 NA Intergenic Intergenic 9523 ENSMUSG00000088192.1 ENSMUSG00000088192 ENSMUST00000157567 Gm23904 snoRNA Interval_170087 chr9 104337299 104338949 + 0 NA promoter-TSS (ENSMUSG00000032561.15) protein_coding-promoter-TSS (ENSMUSG00000032561.15) -376 ENSMUSG00000032561.15 ENSMUSG00000032561 ENSMUST00000215852 Acpp protein_coding Interval_45819 chr13 58307039 58308443 + 0 NA intron (ENSMUSG00000060176.4, intron 2 of 2) protein_coding-intron (ENSMUSG00000060176.4, intron 12 of 16) 5408 ENSMUSG00000098258.1 ENSMUSG00000098258 ENSMUST00000183772 Mir6369 miRNA Interval_17951 chr10 81036477 81037751 + 0 NA exon (ENSMUSG00000046822.14, exon 1 of 3) protein_coding-exon (ENSMUSG00000046822.14, exon 1 of 3) -3202 ENSMUSG00000046822.14 ENSMUSG00000046822 ENSMUST00000152177 Slc39a3 protein_coding Interval_8004 chr1 135172029 135172537 + 0 NA Intergenic Intergenic -4602 ENSMUSG00000026424.8 ENSMUSG00000026424 ENSMUST00000027682 Gpr37l1 protein_coding Interval_75011 chr17 60197490 60197717 + 0 NA Intergenic Intergenic -66728 ENSMUSG00000101606.1 ENSMUSG00000101606 ENSMUST00000190184 Gm29051 lincRNA Interval_120274 chr4 145110837 145111067 + 0 NA exon (ENSMUSG00000020220.16, exon 35 of 68) protein_coding-exon (ENSMUSG00000020220.16, exon 35 of 68) 44534 ENSMUSG00000020220.16 ENSMUSG00000020220 ENSMUST00000132700 Vps13d protein_coding Interval_91397 chr2 38544414 38544671 + 0 NA intron (ENSMUSG00000026749.11, intron 2 of 3) protein_coding-intron (ENSMUSG00000026749.11, intron 1 of 9) -8835 ENSMUSG00000108210.1 ENSMUSG00000108210 ENSMUST00000204769 Gm35808 TEC Interval_9291 chr1 155884193 155884973 + 0 NA intron (ENSMUSG00000033671.18, intron 1 of 3) protein_coding-intron (ENSMUSG00000033671.18, intron 3 of 8) -2037 ENSMUSG00000102837.1 ENSMUSG00000102837 ENSMUST00000191750 Gm37383 TEC Interval_145686 chr7 37369176 37370151 + 0 NA intron (ENSMUSG00000043456.17, intron 3 of 3) protein_coding-intron (ENSMUSG00000043456.17, intron 3 of 3) -3033 ENSMUSG00000108507.1 ENSMUSG00000108507 ENSMUST00000206785 6720469O03Rik TEC Interval_52773 chr14 49710994 49711184 + 0 NA intron (ENSMUSG00000036242.15, intron 5 of 7) protein_coding-intron (ENSMUSG00000036242.15, intron 5 of 7) 2533 ENSMUSG00000082967.2 ENSMUSG00000082967 ENSMUST00000115992 Gm16082 processed_pseudogene Interval_137083 chr6 67228495 67230496 + 0 NA intron (ENSMUSG00000107799.1, intron 1 of 2) antisense-intron (ENSMUSG00000107799.1, intron 1 of 2) -6951 ENSMUSG00000108013.1 ENSMUSG00000108013 ENSMUST00000203382 Gm44052 processed_pseudogene Interval_26892 chr11 61342188 61343303 + 0 NA promoter-TSS (ENSMUSG00000069855.9) protein_coding-promoter-TSS (ENSMUSG00000069855.9) -161 ENSMUSG00000069855.9 ENSMUSG00000069855 ENSMUST00000147450 Slc47a2 protein_coding Interval_40267 chr12 102899091 102901081 + 0 NA intron (ENSMUSG00000043319.5, intron 1 of 1) protein_coding-intron (ENSMUSG00000043319.5, intron 1 of 1) 770 ENSMUSG00000043319.5 ENSMUSG00000043319 ENSMUST00000053611 Cox8c protein_coding Interval_170615 chr9 109549351 109550384 + 0 NA intron (ENSMUSG00000104674.1, intron 3 of 3) antisense-intron (ENSMUSG00000104674.1, intron 3 of 3) -6954 ENSMUSG00000105948.1 ENSMUSG00000105948 ENSMUST00000199162 Gm43089 processed_pseudogene Interval_113063 chr4 47399286 47400225 + 0 NA intron (ENSMUSG00000007613.15, intron 5 of 9) protein_coding-intron (ENSMUSG00000007613.15, intron 4 of 8) 46145 ENSMUSG00000007613.15 ENSMUSG00000007613 ENSMUST00000107725 Tgfbr1 protein_coding Interval_109725 chr3 146343544 146344054 + 0 NA Intergenic Intergenic 19379 ENSMUSG00000105209.1 ENSMUSG00000105209 ENSMUST00000197740 Gm43334 TEC Interval_31885 chr11 103606385 103607275 + 0 NA intron (ENSMUSG00000034239.14, intron 3 of 13) protein_coding-intron (ENSMUSG00000034239.14, intron 3 of 13) -5725 ENSMUSG00000081676.1 ENSMUSG00000081676 ENSMUST00000119578 Gm11643 processed_pseudogene Interval_53163 chr14 54830755 54831932 + 0 NA intron (ENSMUSG00000112858.2, intron 4 of 15) protein_coding-intron (ENSMUSG00000112858.2, intron 4 of 14) -4667 ENSMUSG00000086420.1 ENSMUSG00000086420 ENSMUST00000125697 Gm8865 processed_pseudogene Interval_59989 chr15 63193763 63195227 + 0 NA intron (ENSMUSG00000115520.2, intron 6 of 8) lincRNA-intron (ENSMUSG00000115520.2, intron 6 of 8) 48262 ENSMUSG00000115011.1 ENSMUSG00000115011 ENSMUST00000228074 Gm49013 processed_pseudogene Interval_2749 chr1 44155074 44155839 + 0 NA intron (ENSMUSG00000026048.16, intron 1 of 13) protein_coding-intron (ENSMUSG00000026048.16, intron 1 of 14) 7712 ENSMUSG00000026048.16 ENSMUSG00000026048 ENSMUST00000155862 Ercc5 protein_coding Interval_31677 chr11 102202426 102202610 + 0 NA intron (ENSMUSG00000008855.17, intron 5 of 15) protein_coding-intron (ENSMUSG00000008855.17, intron 14 of 28) 10493 ENSMUSG00000034793.15 ENSMUSG00000034793 ENSMUST00000153178 G6pc3 protein_coding Interval_83928 chr19 5653957 5655625 + 0 NA promoter-TSS (ENSMUSG00000056917.13) protein_coding-promoter-TSS (ENSMUSG00000056917.13) 46 ENSMUSG00000056917.13 ENSMUSG00000056917 ENSMUST00000236827 Sipa1 protein_coding Interval_28208 chr11 74385872 74386093 + 0 NA exon (ENSMUSG00000038807.19, exon 26 of 26) protein_coding-exon (ENSMUSG00000038807.19, exon 26 of 26) 23913 ENSMUSG00000058275.3 ENSMUSG00000058275 ENSMUST00000077794 Olfr412 protein_coding Interval_54397 chr14 68389918 68390856 + 0 NA Intergenic Intergenic -71244 ENSMUSG00000114396.1 ENSMUSG00000114396 ENSMUST00000225482 Gm31227 lincRNA Interval_110271 chr3 155234902 155235166 + 0 NA Intergenic Intergenic 41689 ENSMUSG00000103511.1 ENSMUSG00000103511 ENSMUST00000193089 Gm5285 processed_pseudogene Interval_158701 chr8 85408180 85408492 + 0 NA TTS (ENSMUSG00000036934.9) protein_coding-TTS (ENSMUSG00000036934.9) 6179 ENSMUSG00000109790.1 ENSMUSG00000109790 ENSMUST00000211717 Gm45594 processed_pseudogene Interval_62874 chr15 97624193 97624818 + 0 NA Intergenic Intergenic 55848 ENSMUSG00000022466.6 ENSMUSG00000022466 ENSMUST00000229008 Rpap3 protein_coding Interval_96969 chr2 130145921 130146164 + 0 NA intron (ENSMUSG00000027403.12, intron 8 of 10) protein_coding-intron (ENSMUSG00000027403.12, intron 10 of 12) 22767 ENSMUSG00000027403.12 ENSMUSG00000027403 ENSMUST00000147616 Tgm6 protein_coding Interval_39843 chr12 98973218 98974272 + 0 NA promoter-TSS (ENSMUSG00000021013.16) protein_coding-promoter-TSS (ENSMUSG00000021013.16) 19264 ENSMUSG00000114021.1 ENSMUSG00000114021 ENSMUST00000221939 Gm47109 lincRNA Interval_41786 chr12 119134972 119135870 + 0 NA Intergenic Intergenic -67991 ENSMUSG00000114030.1 ENSMUSG00000114030 ENSMUST00000221798 Gm18921 processed_pseudogene Interval_4559 chr1 75015663 75017524 + 0 NA intron (ENSMUSG00000026162.7, intron 2 of 4) protein_coding-intron (ENSMUSG00000026162.7, intron 2 of 4) 62341 ENSMUSG00000103145.1 ENSMUSG00000103145 ENSMUST00000194616 Gm37744 TEC Interval_110813 chr4 8689923 8692201 + 0 NA promoter-TSS (ENSMUSG00000041235.12) protein_coding-promoter-TSS (ENSMUSG00000041235.12) -17480 ENSMUSG00000082122.1 ENSMUSG00000082122 ENSMUST00000120923 Gm11809 processed_pseudogene Interval_85794 chr19 31663554 31665289 + 0 NA promoter-TSS (ENSMUSG00000052920.16) protein_coding-promoter-TSS (ENSMUSG00000052920.16) -204360 ENSMUSG00000052595.8 ENSMUSG00000052595 ENSMUST00000225165 A1cf protein_coding Interval_160024 chr8 105866540 105867367 + 0 NA intron (ENSMUSG00000008450.8, intron 2 of 2) protein_coding-intron (ENSMUSG00000008450.8, intron 1 of 4) 6308 ENSMUSG00000008450.8 ENSMUSG00000008450 ENSMUST00000212042 Nutf2 protein_coding Interval_129003 chr5 116568244 116568461 + 0 NA intron (ENSMUSG00000063919.11, intron 1 of 12) protein_coding-intron (ENSMUSG00000063919.11, intron 1 of 12) 5143 ENSMUSG00000106914.1 ENSMUSG00000106914 ENSMUST00000201262 Gm42854 sense_intronic Interval_60539 chr15 74720757 74721900 + 0 NA exon (ENSMUSG00000056665.2, exon 1 of 2) protein_coding-exon (ENSMUSG00000056665.2, exon 1 of 2) 124 ENSMUSG00000056665.2 ENSMUSG00000056665 ENSMUST00000070923 Them6 protein_coding Interval_163791 chr9 25833404 25833624 + 0 NA Intergenic Intergenic -20539 ENSMUSG00000095069.1 ENSMUSG00000095069 ENSMUST00000116704 Gm26190 miRNA Interval_157440 chr8 70387519 70388672 + 0 NA exon (ENSMUSG00000003575.13, exon 12 of 14) protein_coding-exon (ENSMUSG00000003575.13, exon 12 of 14) 14224 ENSMUSG00000031849.9 ENSMUSG00000031849 ENSMUST00000212488 Comp protein_coding Interval_64601 chr16 13611937 13613165 + 0 NA intron (ENSMUSG00000022685.9, intron 19 of 23) protein_coding-intron (ENSMUSG00000022685.9, intron 18 of 23) 55587 ENSMUSG00000022685.9 ENSMUSG00000022685 ENSMUST00000229251 Parn protein_coding Interval_119226 chr4 136317346 136318556 + 0 NA intron (ENSMUSG00000066037.14, intron 4 of 10) protein_coding-intron (ENSMUSG00000066037.14, intron 3 of 9) -10065 ENSMUSG00000081330.1 ENSMUSG00000081330 ENSMUST00000119087 Gm13013 processed_pseudogene Interval_27223 chr11 64298722 64299547 + 0 NA Intergenic Intergenic 134561 ENSMUSG00000087622.1 ENSMUSG00000087622 ENSMUST00000145095 Gm12290 lincRNA Interval_173007 chrX 61727538 61729139 + 0 NA Intergenic Intergenic 18841 ENSMUSG00000057615.5 ENSMUSG00000057615 ENSMUST00000075983 Ldoc1 protein_coding Interval_120283 chr4 145177919 145178849 + 0 NA intron (ENSMUSG00000020220.16, intron 3 of 4) protein_coding-intron (ENSMUSG00000020220.16, intron 2 of 67) -22898 ENSMUSG00000020220.16 ENSMUSG00000020220 ENSMUST00000132700 Vps13d protein_coding Interval_8742 chr1 150322300 150323890 + 0 NA intron (ENSMUSG00000099447.1, intron 2 of 3) protein_coding-intron (ENSMUSG00000006007.14, intron 1 of 3) -1443 ENSMUSG00000102990.1 ENSMUSG00000102990 ENSMUST00000194664 Gm37764 TEC Interval_17035 chr10 70728095 70728478 + 0 NA intron (ENSMUSG00000112607.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000112607.1, intron 1 of 1) 10558 ENSMUSG00000112607.1 ENSMUSG00000112607 ENSMUST00000219486 Gm33979 lincRNA Interval_76926 chr17 84997653 84998077 + 0 NA intron (ENSMUSG00000061130.13, intron 1 of 6) protein_coding-intron (ENSMUSG00000061130.13, intron 2 of 5) 4185 ENSMUSG00000061130.13 ENSMUSG00000061130 ENSMUST00000234851 Ppm1b protein_coding Interval_152391 chr7 132705271 132705617 + 0 NA intron (ENSMUSG00000030946.13, intron 7 of 7) protein_coding-intron (ENSMUSG00000030946.13, intron 6 of 6) -45560 ENSMUSG00000087348.1 ENSMUSG00000087348 ENSMUST00000132849 Gm15582 antisense Interval_93850 chr2 77474764 77475209 + 0 NA intron (ENSMUSG00000027016.17, intron 3 of 3) protein_coding-intron (ENSMUSG00000027016.17, intron 3 of 7) 12317 ENSMUSG00000085845.7 ENSMUSG00000085845 ENSMUST00000126572 Gm13944 antisense Interval_15482 chr10 48535055 48535303 + 0 NA intron (ENSMUSG00000111262.1, intron 2 of 2) lincRNA-intron (ENSMUSG00000111262.1, intron 2 of 2) 1177 ENSMUSG00000111262.1 ENSMUSG00000111262 ENSMUST00000217071 Gm47354 lincRNA Interval_172841 chrX 51680122 51681683 + 0 NA promoter-TSS (ENSMUSG00000062184.11) protein_coding-promoter-TSS (ENSMUSG00000062184.11) -337 ENSMUSG00000062184.11 ENSMUSG00000062184 ENSMUST00000140145 Hs6st2 protein_coding Interval_172245 chrX 11803067 11803830 + 0 NA Intergenic Intergenic -47036 ENSMUSG00000065825.1 ENSMUSG00000065825 ENSMUST00000083891 Gm26314 snRNA Interval_29037 chr11 80018224 80018606 + 0 NA intron (ENSMUSG00000017548.15, intron 7 of 14) protein_coding-intron (ENSMUSG00000017548.15, intron 8 of 15) 25309 ENSMUSG00000017548.15 ENSMUSG00000017548 ENSMUST00000144188 Suz12 protein_coding Interval_146788 chr7 51327500 51327718 + 0 NA Intergenic Intergenic -67220 ENSMUSG00000109443.1 ENSMUSG00000109443 ENSMUST00000208045 Gm45002 processed_pseudogene Interval_162810 chr9 9367571 9367780 + 0 NA intron (ENSMUSG00000111061.1, intron 2 of 3) lincRNA-intron (ENSMUSG00000111061.1, intron 2 of 3) 66284 ENSMUSG00000088076.1 ENSMUSG00000088076 ENSMUST00000157451 Gm22815 snRNA Interval_159922 chr8 105214298 105214526 + 0 NA intron (ENSMUSG00000031885.14, intron 5 of 5) protein_coding-intron (ENSMUSG00000031885.14, intron 5 of 5) 10419 ENSMUSG00000084711.1 ENSMUSG00000084711 ENSMUST00000122762 Gm24629 misc_RNA Interval_172173 chrX 8182487 8183988 + 0 NA Intergenic Intergenic -7056 ENSMUSG00000039201.10 ENSMUSG00000039201 ENSMUST00000143984 Tbc1d25 protein_coding Interval_135905 chr6 48586022 48586338 + 0 NA Intergenic Intergenic -3265 ENSMUSG00000052730.7 ENSMUSG00000052730 ENSMUST00000181661 Gm5111 processed_transcript Interval_381 chr1 4780002 4780696 + 0 NA TTS (ENSMUSG00000033845.13) protein_coding-TTS (ENSMUSG00000033845.13) -1137 ENSMUSG00000102275.1 ENSMUSG00000102275 ENSMUST00000195445 Gm37144 TEC Interval_125178 chr5 65116865 65117483 + 0 NA intron (ENSMUSG00000054920.12, intron 1 of 10) protein_coding-intron (ENSMUSG00000054920.12, intron 1 of 10) -13978 ENSMUSG00000054920.12 ENSMUSG00000054920 ENSMUST00000203538 Klhl5 protein_coding Interval_43460 chr13 31363159 31364279 + 0 NA intron (ENSMUSG00000085620.2, intron 5 of 6) lincRNA-intron (ENSMUSG00000085620.2, intron 8 of 8) 10739 ENSMUSG00000088693.1 ENSMUSG00000088693 ENSMUST00000158068 Gm22330 snoRNA Interval_87260 chr19 47252765 47253871 + 0 NA exon (ENSMUSG00000006435.16, exon 4 of 6) protein_coding-exon (ENSMUSG00000006435.16, exon 4 of 6) 1075 ENSMUSG00000118029.1 ENSMUSG00000118029 ENSMUST00000237690 AC132288.1 TEC Interval_113894 chr4 59654996 59655556 + 0 NA intron (ENSMUSG00000045071.14, intron 1 of 3) protein_coding-intron (ENSMUSG00000045071.14, intron 1 of 2) 60966 ENSMUSG00000028383.17 ENSMUSG00000028383 ENSMUST00000128792 Hsdl2 protein_coding Interval_49272 chr13 110037423 110037756 + 0 NA Intergenic Intergenic 133780 ENSMUSG00000084651.1 ENSMUSG00000084651 ENSMUST00000122702 Mir1904 miRNA Interval_38413 chr12 78847637 78849137 + 0 NA TTS (ENSMUSG00000021114.9) protein_coding-TTS (ENSMUSG00000021114.9) 13108 ENSMUSG00000021114.9 ENSMUSG00000021114 ENSMUST00000219891 Atp6v1d protein_coding Interval_38397 chr12 78693171 78693587 + 0 NA intron (ENSMUSG00000056987.8, intron 1 of 4) protein_coding-intron (ENSMUSG00000056987.8, intron 1 of 8) 1697 ENSMUSG00000056987.8 ENSMUSG00000056987 ENSMUST00000219314 Fam71d protein_coding Interval_77917 chr18 5442505 5443152 + 0 NA Intergenic Intergenic -72346 ENSMUSG00000117617.1 ENSMUSG00000117617 ENSMUST00000234572 Gm50065 lincRNA Interval_80914 chr18 50128005 50128913 + 0 NA promoter-TSS (ENSMUSG00000024507.6) protein_coding-promoter-TSS (ENSMUSG00000024507.6) -35 ENSMUSG00000024507.6 ENSMUSG00000024507 ENSMUST00000127325 Hsd17b4 protein_coding Interval_137805 chr6 82673807 82675048 + 0 NA intron (ENSMUSG00000030042.15, intron 1 of 3) protein_coding-intron (ENSMUSG00000030042.15, intron 1 of 3) -5705 ENSMUSG00000107453.1 ENSMUSG00000107453 ENSMUST00000203711 Gm44145 antisense Interval_112359 chr4 40823574 40823875 + 0 NA intron (ENSMUSG00000028413.13, intron 1 of 4) protein_coding-intron (ENSMUSG00000028413.13, intron 1 of 5) 26414 ENSMUSG00000096377.1 ENSMUSG00000096377 ENSMUST00000177794 Mir5123 miRNA Interval_161241 chr8 119064273 119065179 + 0 NA intron (ENSMUSG00000031841.19, intron 6 of 7) protein_coding-intron (ENSMUSG00000031841.19, intron 6 of 13) -86739 ENSMUSG00000031841.19 ENSMUSG00000031841 ENSMUST00000151842 Cdh13 protein_coding Interval_19939 chr10 111389800 111390254 + 0 NA Intergenic Intergenic 52903 ENSMUSG00000112246.1 ENSMUSG00000112246 ENSMUST00000219123 Gm40761 lincRNA Interval_159736 chr8 99676791 99677981 + 0 NA intron (ENSMUSG00000052479.5, intron 2 of 4) lincRNA-intron (ENSMUSG00000052479.5, intron 2 of 4) 13367 ENSMUSG00000083586.2 ENSMUSG00000083586 ENSMUST00000118240 Gm8688 unprocessed_pseudogene Interval_117720 chr4 125760530 125761057 + 0 NA Intergenic Intergenic 161624 ENSMUSG00000085562.7 ENSMUSG00000085562 ENSMUST00000144539 2610028E06Rik lincRNA Interval_29210 chr11 81572722 81573260 + 0 NA exon (ENSMUSG00000080980.1, exon 1 of 1) processed_pseudogene-exon (ENSMUSG00000080980.1, exon 1 of 1) 482 ENSMUSG00000080980.1 ENSMUSG00000080980 ENSMUST00000117522 1700071K01Rik processed_pseudogene Interval_91120 chr2 35255987 35257246 + 0 NA intron (ENSMUSG00000026879.14, intron 1 of 5) protein_coding-intron (ENSMUSG00000026879.14, intron 1 of 5) 232 ENSMUSG00000026879.14 ENSMUSG00000026879 ENSMUST00000124323 Gsn protein_coding Interval_147925 chr7 75611282 75612305 + 0 NA promoter-TSS (ENSMUSG00000066406.16) protein_coding-promoter-TSS (ENSMUSG00000066406.16) 51179 ENSMUSG00000108557.1 ENSMUSG00000108557 ENSMUST00000205544 Gm44835 TEC Interval_65053 chr16 18723905 18725143 + 0 NA Intergenic Intergenic -42308 ENSMUSG00000116825.1 ENSMUSG00000116825 ENSMUST00000231787 Rps2-ps7 processed_pseudogene Interval_133094 chr5 149751914 149752571 + 0 NA intron (ENSMUSG00000051950.10, intron 13 of 14) protein_coding-intron (ENSMUSG00000051950.10, intron 13 of 14) 12710 ENSMUSG00000051950.10 ENSMUSG00000051950 ENSMUST00000201088 B3glct protein_coding Interval_165496 chr9 48687964 48688464 + 0 NA intron (ENSMUSG00000066687.5, intron 4 of 6) protein_coding-intron (ENSMUSG00000066687.5, intron 4 of 6) -90839 ENSMUSG00000032271.13 ENSMUSG00000032271 ENSMUST00000128076 Nnmt protein_coding Interval_3649 chr1 60375555 60375834 + 0 NA intron (ENSMUSG00000049439.13, intron 7 of 11) protein_coding-intron (ENSMUSG00000049439.13, intron 8 of 12) 22575 ENSMUSG00000103822.1 ENSMUSG00000103822 ENSMUST00000191764 6030460B20Rik TEC Interval_56318 chr14 117257798 117258896 + 0 NA intron (ENSMUSG00000058571.11, intron 2 of 9) protein_coding-intron (ENSMUSG00000058571.11, intron 2 of 8) 332816 ENSMUSG00000058571.11 ENSMUSG00000058571 ENSMUST00000078849 Gpc6 protein_coding Interval_137021 chr6 66493501 66493897 + 0 NA Intergenic Intergenic -22194 ENSMUSG00000107775.1 ENSMUSG00000107775 ENSMUST00000203630 Gm19764 processed_pseudogene Interval_795 chr1 11401002 11401874 + 0 NA Intergenic Intergenic -15480 ENSMUSG00000103825.1 ENSMUSG00000103825 ENSMUST00000194502 Gm38178 TEC Interval_60459 chr15 73923573 73923855 + 0 NA Intergenic Intergenic 77199 ENSMUSG00000116256.1 ENSMUSG00000116256 ENSMUST00000230277 Gm32405 lincRNA Interval_56692 chr14 121407394 121407886 + 0 NA Intergenic Intergenic -21684 ENSMUSG00000115666.1 ENSMUSG00000115666 ENSMUST00000228299 Gm49031 processed_pseudogene Interval_125245 chr5 65624488 65624818 + 0 NA exon (ENSMUSG00000106696.1, exon 1 of 1) TEC-exon (ENSMUSG00000106696.1, exon 1 of 1) 719 ENSMUSG00000106696.1 ENSMUSG00000106696 ENSMUST00000201770 Gm42729 TEC Interval_15330 chr10 44536185 44536547 + 0 NA Intergenic Intergenic -53562 ENSMUSG00000111730.1 ENSMUSG00000111730 ENSMUST00000213337 Gm5950 processed_pseudogene Interval_60817 chr15 76933253 76934561 + 0 NA exon (ENSMUSG00000115920.1, exon 1 of 1) processed_pseudogene-exon (ENSMUSG00000115920.1, exon 1 of 1) 1153 ENSMUSG00000115920.1 ENSMUSG00000115920 ENSMUST00000230695 Gm18283 processed_pseudogene Interval_133748 chr6 11187375 11187572 + 0 NA Intergenic Intergenic -213095 ENSMUSG00000107948.2 ENSMUSG00000107948 ENSMUST00000205141 AA545190 lincRNA Interval_52056 chr14 34920743 34920955 + 0 NA intron (ENSMUSG00000041078.7, intron 2 of 15) protein_coding-intron (ENSMUSG00000041078.7, intron 2 of 15) 26240 ENSMUSG00000065481.1 ENSMUSG00000065481 ENSMUST00000083547 Mir346 miRNA Interval_127662 chr5 106399624 106399966 + 0 NA Intergenic Intergenic 30783 ENSMUSG00000105618.1 ENSMUSG00000105618 ENSMUST00000197142 Gm42916 lincRNA Interval_18272 chr10 84512766 84513060 + 0 NA Intergenic Intergenic -5132 ENSMUSG00000111514.1 ENSMUSG00000111514 ENSMUST00000215920 E230014E18Rik lincRNA Interval_149078 chr7 92921759 92922669 + 0 NA intron (ENSMUSG00000061119.7, intron 6 of 8) protein_coding-intron (ENSMUSG00000061119.7, intron 6 of 8) 20035 ENSMUSG00000109268.1 ENSMUSG00000109268 ENSMUST00000208883 9530078K11Rik TEC Interval_116100 chr4 107679075 107679349 + 0 NA intron (ENSMUSG00000028610.16, intron 3 of 3) protein_coding-intron (ENSMUSG00000028610.16, intron 3 of 3) 4368 ENSMUSG00000028610.16 ENSMUSG00000028610 ENSMUST00000131508 Dmrtb1 protein_coding Interval_71417 chr17 23623473 23623812 + 0 NA Intergenic Intergenic -2742 ENSMUSG00000117059.1 ENSMUSG00000117059 ENSMUST00000233762 Gm7912 processed_pseudogene Interval_99529 chr2 162986168 162987235 + 0 NA promoter-TSS (ENSMUSG00000017868.16) protein_coding-promoter-TSS (ENSMUSG00000017868.16) -3440 ENSMUSG00000080962.1 ENSMUSG00000080962 ENSMUST00000117318 Gm11453 processed_pseudogene Interval_30276 chr11 92770178 92770737 + 0 NA intron (ENSMUSG00000081363.2, intron 1 of 1) processed_pseudogene-intron (ENSMUSG00000081363.2, intron 1 of 1) 516 ENSMUSG00000081363.2 ENSMUSG00000081363 ENSMUST00000118237 Gm11500 processed_pseudogene Interval_170336 chr9 107255322 107256124 + 0 NA TTS (ENSMUSG00000032577.16) protein_coding-TTS (ENSMUSG00000032577.16) 14503 ENSMUSG00000104086.1 ENSMUSG00000104086 ENSMUST00000195377 1700039M15Rik lincRNA Interval_135058 chr6 35023355 35023795 + 0 NA exon (ENSMUSG00000038784.13, exon 1 of 1) protein_coding-exon (ENSMUSG00000038784.13, exon 1 of 1) -35171 ENSMUSG00000029847.13 ENSMUSG00000029847 ENSMUST00000144079 Slc23a4 protein_coding Interval_50956 chr14 21081224 21081509 + 0 NA intron (ENSMUSG00000039197.10, intron 1 of 10) protein_coding-intron (ENSMUSG00000039197.10, intron 1 of 10) 28749 ENSMUSG00000039197.10 ENSMUSG00000039197 ENSMUST00000224974 Adk protein_coding Interval_167537 chr9 70307629 70307861 + 0 NA intron (ENSMUSG00000032220.10, intron 5 of 28) protein_coding-intron (ENSMUSG00000032220.10, intron 4 of 27) 98008 ENSMUSG00000093763.1 ENSMUSG00000093763 ENSMUST00000176002 Mir5626 miRNA Interval_87417 chr19 49539373 49539959 + 0 NA Intergenic Intergenic -14352 ENSMUSG00000117931.1 ENSMUSG00000117931 ENSMUST00000238143 Gm50444 unprocessed_pseudogene Interval_5586 chr1 89976532 89977702 + 0 NA intron (ENSMUSG00000067081.13, intron 2 of 4) protein_coding-intron (ENSMUSG00000067081.13, intron 3 of 5) 19335 ENSMUSG00000067081.13 ENSMUSG00000067081 ENSMUST00000151330 Asb18 protein_coding Interval_30644 chr11 95645302 95646037 + 0 NA Intergenic Intergenic -21341 ENSMUSG00000038845.11 ENSMUSG00000038845 ENSMUST00000123001 Phb protein_coding Interval_163937 chr9 29343568 29343895 + 0 NA intron (ENSMUSG00000059974.10, intron 2 of 2) protein_coding-intron (ENSMUSG00000059974.10, intron 2 of 7) 248779 ENSMUSG00000085638.1 ENSMUSG00000085638 ENSMUST00000141752 Gm15521 sense_intronic Interval_114127 chr4 63843963 63844181 + 0 NA intron (ENSMUSG00000028362.2, intron 2 of 3) protein_coding-intron (ENSMUSG00000028362.2, intron 2 of 3) 17275 ENSMUSG00000028362.2 ENSMUSG00000028362 ENSMUST00000030047 Tnfsf8 protein_coding Interval_53299 chr14 55868129 55868933 + 0 NA intron (ENSMUSG00000075592.10, intron 7 of 7) protein_coding-intron (ENSMUSG00000075592.10, intron 8 of 8) 14521 ENSMUSG00000075592.10 ENSMUSG00000075592 ENSMUST00000100529 Nynrin protein_coding Interval_12446 chr1 193520265 193520455 + 0 NA Intergenic Intergenic -10186 ENSMUSG00000097850.2 ENSMUSG00000097850 ENSMUST00000180420 Mir205hg lincRNA Interval_145023 chr7 29480480 29481783 + 0 NA intron (ENSMUSG00000030583.16, intron 1 of 2) protein_coding-intron (ENSMUSG00000030583.16, intron 2 of 22) -43412 ENSMUSG00000074224.3 ENSMUSG00000074224 ENSMUST00000098602 4932431P20Rik transcribed_unitary_pseudogene Interval_53499 chr14 57869769 57870288 + 0 NA intron (ENSMUSG00000021969.8, intron 3 of 13) protein_coding-intron (ENSMUSG00000021969.8, intron 3 of 12) 20194 ENSMUSG00000021969.8 ENSMUSG00000021969 ENSMUST00000225955 Zdhhc20 protein_coding Interval_113427 chr4 54956076 54956406 + 0 NA intron (ENSMUSG00000060206.11, intron 1 of 12) protein_coding-intron (ENSMUSG00000060206.11, intron 1 of 12) 11193 ENSMUSG00000060206.11 ENSMUSG00000060206 ENSMUST00000079605 Zfp462 protein_coding Interval_165144 chr9 44798893 44799987 + 0 NA promoter-TSS (ENSMUSG00000002032.17) protein_coding-promoter-TSS (ENSMUSG00000002032.17) 182 ENSMUSG00000110750.1 ENSMUSG00000110750 ENSMUST00000214931 Gm48702 antisense Interval_49277 chr13 110054833 110055310 + 0 NA exon (ENSMUSG00000021700.10, exon 5 of 5) protein_coding-exon (ENSMUSG00000021700.10, exon 5 of 5) 151262 ENSMUSG00000084651.1 ENSMUSG00000084651 ENSMUST00000122702 Mir1904 miRNA Interval_158905 chr8 87854937 87855378 + 0 NA intron (ENSMUSG00000045333.15, intron 3 of 3) protein_coding-intron (ENSMUSG00000045333.15, intron 2 of 6) 98705 ENSMUSG00000045333.15 ENSMUSG00000045333 ENSMUST00000173092 Zfp423 protein_coding Interval_40054 chr12 100895707 100895946 + 0 NA TTS (ENSMUSG00000021185.16) protein_coding-TTS (ENSMUSG00000021185.16) -1449 ENSMUSG00000118530.1 ENSMUSG00000118530 ENSMUST00000238798 AC126262.1 processed_pseudogene Interval_31226 chr11 99006509 99006755 + 0 NA promoter-TSS (ENSMUSG00000020914.17) protein_coding-promoter-TSS (ENSMUSG00000020914.17) 7124 ENSMUSG00000077285.1 ENSMUSG00000077285 ENSMUST00000104097 Gm26394 snoRNA Interval_51054 chr14 21830712 21832086 + 0 NA promoter-TSS (ENSMUSG00000021771.14) protein_coding-promoter-TSS (ENSMUSG00000021771.14) 6161 ENSMUSG00000021771.14 ENSMUSG00000021771 ENSMUST00000142084 Vdac2 protein_coding Interval_150363 chr7 109921339 109921549 + 0 NA promoter-TSS (ENSMUSG00000035901.14) protein_coding-promoter-TSS (ENSMUSG00000035901.14) -23888 ENSMUSG00000035901.14 ENSMUSG00000035901 ENSMUST00000151923 Dennd5a protein_coding Interval_121872 chr5 9047625 9047968 + 0 NA intron (ENSMUSG00000114430.1, intron 2 of 2) lincRNA-intron (ENSMUSG00000114430.1, intron 2 of 2) 13016 ENSMUSG00000114430.1 ENSMUSG00000114430 ENSMUST00000224996 Gm40264 lincRNA Interval_16807 chr10 68263773 68264450 + 0 NA intron (ENSMUSG00000019947.10, intron 2 of 9) protein_coding-intron (ENSMUSG00000019947.10, intron 2 of 10) 14629 ENSMUSG00000019947.10 ENSMUSG00000019947 ENSMUST00000218425 Arid5b protein_coding Interval_113325 chr4 53474355 53475932 + 0 NA intron (ENSMUSG00000028412.17, intron 1 of 3) protein_coding-intron (ENSMUSG00000028412.17, intron 1 of 15) 34472 ENSMUSG00000028412.17 ENSMUSG00000028412 ENSMUST00000133582 Slc44a1 protein_coding Interval_171097 chr9 114513147 114513375 + 0 NA exon (ENSMUSG00000079259.2, exon 4 of 4) protein_coding-exon (ENSMUSG00000079259.2, exon 4 of 4) -2436 ENSMUSG00000097821.2 ENSMUSG00000097821 ENSMUST00000238379 C130032M10Rik antisense Interval_139452 chr6 100273433 100273940 + 0 NA promoter-TSS (ENSMUSG00000107690.1) TEC-promoter-TSS (ENSMUSG00000107690.1) 12 ENSMUSG00000107690.1 ENSMUSG00000107690 ENSMUST00000205178 Gm44044 TEC Interval_83118 chr18 81589736 81590469 + 0 NA Intergenic Intergenic 47645 ENSMUSG00000117870.1 ENSMUSG00000117870 ENSMUST00000236490 Gm41792 lincRNA Interval_152728 chr7 136941160 136941386 + 0 NA intron (ENSMUSG00000054612.4, intron 1 of 4) protein_coding-intron (ENSMUSG00000054612.4, intron 1 of 4) 20332 ENSMUSG00000109721.1 ENSMUSG00000109721 ENSMUST00000210484 Gm45280 TEC Interval_168137 chr9 77468488 77468843 + 0 NA intron (ENSMUSG00000032352.16, intron 3 of 13) protein_coding-intron (ENSMUSG00000032352.16, intron 3 of 13) -69247 ENSMUSG00000099170.1 ENSMUSG00000099170 ENSMUST00000183878 5730403I07Rik lincRNA Interval_36121 chr12 36072295 36072501 + 0 NA Intergenic Intergenic -17981 ENSMUSG00000059301.7 ENSMUSG00000059301 ENSMUST00000071825 Gm5434 transcribed_processed_pseudogene Interval_48497 chr13 99443630 99445229 + 0 NA promoter-TSS (ENSMUSG00000052727.6) protein_coding-promoter-TSS (ENSMUSG00000052727.6) 38 ENSMUSG00000052727.6 ENSMUSG00000052727 ENSMUST00000223820 Map1b protein_coding Interval_157218 chr8 68061829 68063102 + 0 NA promoter-TSS (ENSMUSG00000030465.19) protein_coding-promoter-TSS (ENSMUSG00000030465.19) 52125 ENSMUSG00000077545.1 ENSMUSG00000077545 ENSMUST00000104357 Gm22018 snoRNA Interval_13166 chr10 12725264 12726841 + 0 NA intron (ENSMUSG00000019820.11, intron 17 of 17) protein_coding-intron (ENSMUSG00000019820.11, intron 16 of 73) -37190 ENSMUSG00000019820.11 ENSMUSG00000019820 ENSMUST00000219135 Utrn protein_coding Interval_136505 chr6 55016268 55017358 + 0 NA Intergenic Intergenic -24189 ENSMUSG00000002797.9 ENSMUSG00000002797 ENSMUST00000204770 Ggct protein_coding Interval_170938 chr9 112642306 112642543 + 0 NA Intergenic Intergenic 119895 ENSMUSG00000096353.1 ENSMUSG00000096353 ENSMUST00000179604 Gm24957 snoRNA Interval_66007 chr16 30888781 30889285 + 0 NA promoter-TSS (ENSMUSG00000088782.1) snoRNA-promoter-TSS (ENSMUSG00000088782.1) -63 ENSMUSG00000088782.1 ENSMUSG00000088782 ENSMUST00000158157 Gm25375 snoRNA Interval_3479 chr1 58723307 58723745 + 0 NA TTS (ENSMUSG00000026031.15) protein_coding-TTS (ENSMUSG00000026031.15) 9640 ENSMUSG00000026031.15 ENSMUSG00000026031 ENSMUST00000123032 Cflar protein_coding Interval_154017 chr8 11915818 11916029 + 0 NA Intergenic Intergenic 32374 ENSMUSG00000110002.1 ENSMUSG00000110002 ENSMUST00000211135 Gm45680 lincRNA Interval_26777 chr11 60423034 60423775 + 0 NA intron (ENSMUSG00000018415.14, intron 1 of 7) protein_coding-intron (ENSMUSG00000018415.14, intron 1 of 5) 6259 ENSMUSG00000018415.14 ENSMUSG00000018415 ENSMUST00000070681 Gid4 protein_coding Interval_25508 chr11 49357063 49357413 + 0 NA Intergenic Intergenic 22050 ENSMUSG00000045421.2 ENSMUSG00000045421 ENSMUST00000062719 Olfr1390 protein_coding Interval_11480 chr1 182115193 182115941 + 0 NA Intergenic Intergenic 12622 ENSMUSG00000103018.1 ENSMUSG00000103018 ENSMUST00000194902 Gm17968 processed_pseudogene Interval_41307 chr12 112617690 112618351 + 0 NA Intergenic Intergenic -2057 ENSMUSG00000011148.14 ENSMUSG00000011148 ENSMUST00000221720 Adssl1 protein_coding Interval_83146 chr18 82136136 82137138 + 0 NA Intergenic Intergenic 121873 ENSMUSG00000117913.1 ENSMUSG00000117913 ENSMUST00000237813 Gm50294 lincRNA Interval_18030 chr10 81452368 81453377 + 0 NA intron (ENSMUSG00000055053.18, intron 1 of 9) protein_coding-intron (ENSMUSG00000055053.18, intron 1 of 9) 2763 ENSMUSG00000055053.18 ENSMUSG00000055053 ENSMUST00000221817 Nfic protein_coding Interval_105107 chr3 81293087 81293440 + 0 NA Intergenic Intergenic 112309 ENSMUSG00000102223.1 ENSMUSG00000102223 ENSMUST00000193327 Gm37300 processed_pseudogene Interval_93837 chr2 77341703 77342264 + 0 NA Intergenic Intergenic 6624 ENSMUSG00000082006.1 ENSMUSG00000082006 ENSMUST00000122325 Gm13649 processed_pseudogene Interval_59887 chr15 60832822 60834304 + 0 NA intron (ENSMUSG00000072568.4, intron 1 of 1) protein_coding-intron (ENSMUSG00000072568.4, intron 1 of 1) 10610 ENSMUSG00000097493.3 ENSMUSG00000097493 ENSMUST00000181910 9930014A18Rik processed_transcript Interval_34669 chr12 8514082 8514797 + 0 NA intron (ENSMUSG00000112276.1, intron 1 of 2) antisense-intron (ENSMUSG00000112276.1, intron 1 of 2) 3238 ENSMUSG00000112276.1 ENSMUSG00000112276 ENSMUST00000218759 5033421B08Rik antisense Interval_115875 chr4 105447900 105448077 + 0 NA Intergenic Intergenic -63244 ENSMUSG00000083128.1 ENSMUSG00000083128 ENSMUST00000120700 Gm12723 processed_pseudogene Interval_159549 chr8 95395093 95396130 + 0 NA Intergenic Intergenic 25740 ENSMUSG00000031790.8 ENSMUSG00000031790 ENSMUST00000212235 Mmp15 protein_coding Interval_160279 chr8 107655896 107656841 + 0 NA Intergenic Intergenic 34476 ENSMUSG00000110508.1 ENSMUSG00000110508 ENSMUST00000212585 Gm8940 processed_pseudogene Interval_21312 chr10 127892194 127894035 + 0 NA Intergenic Intergenic -4784 ENSMUSG00000040134.8 ENSMUSG00000040134 ENSMUST00000130374 Rdh7 protein_coding Interval_100952 chr2 173594936 173595844 + 0 NA TTS (ENSMUSG00000055897.13) transcribed_unprocessed_pseudogene-TTS (ENSMUSG00000055897.13) -4077 ENSMUSG00000055897.13 ENSMUSG00000055897 ENSMUST00000133185 Ppp4r1l-ps transcribed_unprocessed_pseudogene Interval_77508 chr17 90496081 90496422 + 0 NA intron (ENSMUSG00000024109.18, intron 3 of 3) protein_coding-intron (ENSMUSG00000024109.18, intron 15 of 20) -39678 ENSMUSG00000024109.18 ENSMUSG00000024109 ENSMUST00000162002 Nrxn1 protein_coding Interval_91425 chr2 38696725 38698026 + 0 NA intron (ENSMUSG00000026751.14, intron 6 of 6) protein_coding-intron (ENSMUSG00000026751.14, intron 6 of 6) 13813 ENSMUSG00000026751.14 ENSMUSG00000026751 ENSMUST00000149690 Nr5a1 protein_coding Interval_18614 chr10 88490956 88491943 + 0 NA intron (ENSMUSG00000060002.14, intron 1 of 8) protein_coding-intron (ENSMUSG00000060002.14, intron 1 of 7) -15009 ENSMUSG00000060002.14 ENSMUSG00000060002 ENSMUST00000073783 Chpt1 protein_coding Interval_89479 chr2 20921772 20925357 + 0 NA intron (ENSMUSG00000085206.1, intron 1 of 1) protein_coding-intron (ENSMUSG00000036591.16, intron 2 of 25) 7825 ENSMUSG00000085206.1 ENSMUSG00000085206 ENSMUST00000124322 Gm13380 sense_intronic Interval_59812 chr15 59519023 59519630 + 0 NA intron (ENSMUSG00000059586.10, intron 5 of 7) protein_coding-intron (ENSMUSG00000059586.10, intron 4 of 6) -99264 ENSMUSG00000115896.1 ENSMUSG00000115896 ENSMUST00000229684 Gm36677 lincRNA Interval_80386 chr18 41004920 41005179 + 0 NA Intergenic Intergenic 41770 ENSMUSG00000088611.1 ENSMUSG00000088611 ENSMUST00000157986 Gm22483 misc_RNA Interval_76148 chr17 75561949 75562536 + 0 NA Intergenic Intergenic -10369 ENSMUSG00000002017.10 ENSMUSG00000002017 ENSMUST00000141969 Fam98a protein_coding Interval_155069 chr8 26113285 26113455 + 0 NA intron (ENSMUSG00000037234.17, intron 1 of 21) protein_coding-intron (ENSMUSG00000037234.17, intron 1 of 21) -6018 ENSMUSG00000013878.18 ENSMUSG00000013878 ENSMUST00000124867 Rnf170 protein_coding Interval_88468 chr2 5402056 5403085 + 0 NA intron (ENSMUSG00000039145.16, intron 3 of 10) protein_coding-intron (ENSMUSG00000039145.16, intron 3 of 10) 118920 ENSMUSG00000080820.1 ENSMUSG00000080820 ENSMUST00000117204 Gm13197 processed_pseudogene Interval_164562 chr9 38717856 38719804 + 0 NA promoter-TSS (ENSMUSG00000023186.14) protein_coding-promoter-TSS (ENSMUSG00000023186.14) -15598 ENSMUSG00000056961.2 ENSMUSG00000056961 ENSMUST00000071425 Olfr919 protein_coding Interval_91959 chr2 52036591 52038188 + 0 NA promoter-TSS (ENSMUSG00000053475.5) protein_coding-promoter-TSS (ENSMUSG00000053475.5) -620 ENSMUSG00000053475.5 ENSMUSG00000053475 ENSMUST00000065927 Tnfaip6 protein_coding Interval_108104 chr3 121525560 121527410 + 0 NA intron (ENSMUSG00000039865.8, intron 1 of 3) protein_coding-intron (ENSMUSG00000039865.8, intron 3 of 14) 622 ENSMUSG00000039865.8 ENSMUSG00000039865 ENSMUST00000199422 Slc44a3 protein_coding Interval_69971 chr17 3615478 3616999 + 0 NA Intergenic Intergenic 58414 ENSMUSG00000116852.1 ENSMUSG00000116852 ENSMUST00000231344 1700102H20Rik lincRNA Interval_92854 chr2 66702211 66702418 + 0 NA intron (ENSMUSG00000034810.7, intron 12 of 24) protein_coding-intron (ENSMUSG00000034810.7, intron 12 of 24) -67661 ENSMUSG00000075316.11 ENSMUSG00000075316 ENSMUST00000141603 Scn9a protein_coding Interval_115956 chr4 106589923 106591280 + 0 NA TTS (ENSMUSG00000054362.9) protein_coding-TTS (ENSMUSG00000054362.9) -1493 ENSMUSG00000085023.1 ENSMUSG00000085023 ENSMUST00000146976 Gm12744 antisense Interval_50549 chr14 14950500 14951142 + 0 NA intron (ENSMUSG00000042567.20, intron 26 of 35) protein_coding-intron (ENSMUSG00000042567.20, intron 8 of 12) 91348 ENSMUSG00000114542.1 ENSMUSG00000114542 ENSMUST00000224124 Gm18142 processed_pseudogene Interval_115865 chr4 105316686 105317568 + 0 NA Intergenic Intergenic 57819 ENSMUSG00000081819.1 ENSMUSG00000081819 ENSMUST00000118507 Gm12722 processed_pseudogene Interval_156665 chr8 56609173 56610093 + 0 NA Intergenic Intergenic 21713 ENSMUSG00000038206.13 ENSMUSG00000038206 ENSMUST00000211294 Fbxo8 protein_coding Interval_77827 chr18 4275204 4275731 + 0 NA Intergenic Intergenic 19015 ENSMUSG00000117482.1 ENSMUSG00000117482 ENSMUST00000234061 Gm7400 processed_pseudogene Interval_4035 chr1 66752324 66752958 + 0 NA intron (ENSMUSG00000026004.15, intron 5 of 13) protein_coding-intron (ENSMUSG00000026004.15, intron 6 of 13) 16090 ENSMUSG00000102559.1 ENSMUSG00000102559 ENSMUST00000195411 Gm37570 TEC Interval_101872 chr3 10310664 10311400 + 0 NA TTS (ENSMUSG00000027531.16) protein_coding-TTS (ENSMUSG00000027531.16) 1984 ENSMUSG00000103592.1 ENSMUSG00000103592 ENSMUST00000191814 Gm38364 processed_pseudogene Interval_50851 chr14 20203107 20203708 + 0 NA Intergenic Intergenic -3295 ENSMUSG00000087916.1 ENSMUSG00000087916 ENSMUST00000157291 Gm24912 snoRNA Interval_153012 chr7 140863424 140864022 + 0 NA TTS (ENSMUSG00000025485.13) protein_coding-TTS (ENSMUSG00000025485.13) 6272 ENSMUSG00000025485.13 ENSMUSG00000025485 ENSMUST00000152212 Ric8a protein_coding Interval_9158 chr1 154165357 154165589 + 0 NA Intergenic Intergenic -35714 ENSMUSG00000066797.6 ENSMUSG00000066797 ENSMUST00000086195 Zfp648 protein_coding Interval_3752 chr1 62783187 62784332 + 0 NA intron (ENSMUSG00000025969.15, intron 13 of 16) protein_coding-intron (ENSMUSG00000025969.15, intron 13 of 15) -25543 ENSMUSG00000103032.1 ENSMUSG00000103032 ENSMUST00000192219 Gm37121 TEC Interval_80638 chr18 44941515 44942488 + 0 NA Intergenic Intergenic 86766 ENSMUSG00000034653.11 ENSMUSG00000034653 ENSMUST00000202176 Ythdc2 protein_coding Interval_66061 chr16 31326089 31327297 + 0 NA intron (ENSMUSG00000116973.1, intron 2 of 2) lincRNA-intron (ENSMUSG00000116973.1, intron 2 of 2) 1458 ENSMUSG00000116973.1 ENSMUSG00000116973 ENSMUST00000231745 AV205837 lincRNA Interval_5856 chr1 92683193 92683730 + 0 NA Intergenic Intergenic 33741 ENSMUSG00000100546.1 ENSMUSG00000100546 ENSMUST00000188188 Gm29483 lincRNA Interval_37658 chr12 70893291 70894288 + 0 NA exon (ENSMUSG00000048285.9, exon 11 of 14) protein_coding-exon (ENSMUSG00000048285.9, exon 11 of 14) 18362 ENSMUSG00000113584.1 ENSMUSG00000113584 ENSMUST00000221434 Gm46355 lincRNA Interval_66087 chr16 31518271 31520881 + 0 NA Intergenic Intergenic 11189 ENSMUSG00000116762.1 ENSMUSG00000116762 ENSMUST00000231805 Gm46560 lincRNA Interval_113618 chr4 57038281 57038703 + 0 NA intron (ENSMUSG00000028434.12, intron 17 of 25) protein_coding-intron (ENSMUSG00000028434.12, intron 17 of 25) 32067 ENSMUSG00000028434.12 ENSMUSG00000028434 ENSMUST00000133859 Epb41l4b protein_coding Interval_153071 chr7 141172252 141173075 + 0 NA intron (ENSMUSG00000038650.15, intron 1 of 9) protein_coding-intron (ENSMUSG00000038650.15, intron 1 of 9) -4472 ENSMUSG00000038650.15 ENSMUSG00000038650 ENSMUST00000210979 Rnh1 protein_coding Interval_135800 chr6 47453487 47455403 + 0 NA promoter-TSS (ENSMUSG00000052241.3) pseudogene-promoter-TSS (ENSMUSG00000052241.3) -125 ENSMUSG00000052241.3 ENSMUSG00000052241 ENSMUST00000064013 A930035D04Rik pseudogene Interval_129763 chr5 122179320 122180215 + 0 NA Intergenic Intergenic 14170 ENSMUSG00000105742.1 ENSMUSG00000105742 ENSMUST00000199354 Gm42748 TEC Interval_115902 chr4 106126145 106126336 + 0 NA Intergenic Intergenic -7158 ENSMUSG00000106163.1 ENSMUSG00000106163 ENSMUST00000198840 Gm26047 snoRNA Interval_114687 chr4 83793972 83794688 + 0 NA intron (ENSMUSG00000052407.17, intron 23 of 25) protein_coding-intron (ENSMUSG00000052407.17, intron 23 of 25) 50653 ENSMUSG00000097942.1 ENSMUSG00000097942 ENSMUST00000182894 Gm26968 sense_intronic Interval_141292 chr6 126955693 126956193 + 0 NA TTS (ENSMUSG00000030347.6) protein_coding-TTS (ENSMUSG00000030347.6) 5603 ENSMUSG00000030347.6 ENSMUSG00000030347 ENSMUST00000201520 D6Wsu163e protein_coding Interval_90996 chr2 34014878 34015871 + 0 NA Intergenic Intergenic 37128 ENSMUSG00000086904.1 ENSMUSG00000086904 ENSMUST00000156633 Gm13404 lincRNA Interval_152001 chr7 128124606 128124956 + 0 NA intron (ENSMUSG00000108596.1, intron 29 of 29) protein_coding-intron (ENSMUSG00000108596.1, intron 29 of 29) -2054 ENSMUSG00000108578.1 ENSMUSG00000108578 ENSMUST00000205866 Gm45700 processed_pseudogene Interval_33492 chr11 116865918 116866486 + 0 NA intron (ENSMUSG00000020818.16, intron 7 of 10) protein_coding-intron (ENSMUSG00000020818.16, intron 9 of 12) 12124 ENSMUSG00000020818.16 ENSMUSG00000020818 ENSMUST00000134106 Mfsd11 protein_coding Interval_105917 chr3 90079057 90080575 + 0 NA promoter-TSS (ENSMUSG00000027940.18) protein_coding-promoter-TSS (ENSMUSG00000027940.18) -7623 ENSMUSG00000027940.18 ENSMUSG00000027940 ENSMUST00000136125 Tpm3 protein_coding Interval_144095 chr7 19395832 19396366 + 0 NA promoter-TSS (ENSMUSG00000040714.14) protein_coding-promoter-TSS (ENSMUSG00000040714.14) -117 ENSMUSG00000040714.14 ENSMUSG00000040714 ENSMUST00000125246 Klc3 protein_coding Interval_151900 chr7 127411704 127411984 + 0 NA promoter-TSS (ENSMUSG00000108663.1) processed_pseudogene-promoter-TSS (ENSMUSG00000108663.1) -853 ENSMUSG00000108663.1 ENSMUSG00000108663 ENSMUST00000205429 Gm33080 processed_pseudogene Interval_26075 chr11 53941136 53941576 + 0 NA Intergenic Intergenic -11880 ENSMUSG00000081098.1 ENSMUSG00000081098 ENSMUST00000118476 Gm12220 unprocessed_pseudogene Interval_157156 chr8 66579951 66581244 + 0 NA Intergenic Intergenic 8411 ENSMUSG00000085082.1 ENSMUSG00000085082 ENSMUST00000128324 Gm16330 processed_pseudogene Interval_49776 chr13 114964091 114964536 + 0 NA intron (ENSMUSG00000042284.10, intron 28 of 28) protein_coding-intron (ENSMUSG00000042284.10, intron 28 of 28) -29245 ENSMUSG00000114703.1 ENSMUSG00000114703 ENSMUST00000225140 Gm47776 processed_pseudogene Interval_131808 chr5 140011501 140011750 + 0 NA intron (ENSMUSG00000029554.15, intron 6 of 6) protein_coding-intron (ENSMUSG00000029554.15, intron 17 of 17) 20551 ENSMUSG00000105453.1 ENSMUSG00000105453 ENSMUST00000198772 Gm43702 TEC Interval_76753 chr17 83838644 83839425 + 0 NA intron (ENSMUSG00000000673.9, intron 2 of 6) protein_coding-intron (ENSMUSG00000000673.9, intron 2 of 9) 7755 ENSMUSG00000000673.9 ENSMUSG00000000673 ENSMUST00000234312 Haao protein_coding Interval_132483 chr5 145222840 145224115 + 0 NA Intergenic Intergenic -8238 ENSMUSG00000007812.16 ENSMUSG00000007812 ENSMUST00000085661 Zfp655 protein_coding Interval_84007 chr19 6066808 6068282 + 0 NA promoter-TSS (ENSMUSG00000024799.16) protein_coding-promoter-TSS (ENSMUSG00000024799.16) 282 ENSMUSG00000024799.16 ENSMUSG00000024799 ENSMUST00000160028 Tm7sf2 protein_coding Interval_159322 chr8 93505779 93506150 + 0 NA intron (ENSMUSG00000058019.13, intron 10 of 12) protein_coding-intron (ENSMUSG00000058019.13, intron 10 of 12) -19217 ENSMUSG00000118579.1 ENSMUSG00000118579 ENSMUST00000239350 AC162945.1 unprocessed_pseudogene Interval_701 chr1 10015918 10016211 + 0 NA Intergenic Intergenic -6147 ENSMUSG00000095780.1 ENSMUSG00000095780 ENSMUST00000179194 Gm24674 snRNA Interval_160833 chr8 113426308 113426529 + 0 NA Intergenic Intergenic 93188 ENSMUSG00000077289.1 ENSMUSG00000077289 ENSMUST00000104101 Gm25766 snoRNA Interval_52082 chr14 35403492 35404057 + 0 NA intron (ENSMUSG00000041078.7, intron 8 of 15) protein_coding-intron (ENSMUSG00000041078.7, intron 8 of 15) -46574 ENSMUSG00000041078.7 ENSMUSG00000041078 ENSMUST00000173307 Grid1 protein_coding Interval_117042 chr4 119180112 119180925 + 0 NA intron (ENSMUSG00000028644.17, intron 9 of 12) protein_coding-intron (ENSMUSG00000028644.17, intron 9 of 12) -6662 ENSMUSG00000045268.13 ENSMUSG00000045268 ENSMUST00000154226 Zfp691 protein_coding Interval_31691 chr11 102276246 102277255 + 0 NA exon (ENSMUSG00000034768.4, exon 3 of 5) protein_coding-exon (ENSMUSG00000034768.4, exon 3 of 5) 8007 ENSMUSG00000034768.4 ENSMUSG00000034768 ENSMUST00000036467 Asb16 protein_coding Interval_139404 chr6 99875015 99875231 + 0 NA Intergenic Intergenic 3211 ENSMUSG00000084319.3 ENSMUSG00000084319 ENSMUST00000121046 Tpt1-ps3 processed_pseudogene Interval_42118 chr13 8961591 8963074 + 0 NA Intergenic Intergenic -4373 ENSMUSG00000113466.1 ENSMUSG00000113466 ENSMUST00000221977 Gm48649 unprocessed_pseudogene Interval_138626 chr6 90530801 90531456 + 0 NA intron (ENSMUSG00000030088.15, intron 1 of 2) protein_coding-intron (ENSMUSG00000030088.15, intron 1 of 2) 17826 ENSMUSG00000108271.1 ENSMUSG00000108271 ENSMUST00000204492 Gm44236 TEC Interval_130186 chr5 124804464 124805386 + 0 NA promoter-TSS (ENSMUSG00000038011.15) protein_coding-promoter-TSS (ENSMUSG00000038011.15) 13387 ENSMUSG00000105583.1 ENSMUSG00000105583 ENSMUST00000197269 Gm43777 antisense Interval_64069 chr16 7146065 7146734 + 0 NA intron (ENSMUSG00000008658.16, intron 1 of 12) protein_coding-intron (ENSMUSG00000008658.16, intron 3 of 14) -47348 ENSMUSG00000008658.16 ENSMUSG00000008658 ENSMUST00000231031 Rbfox1 protein_coding Interval_97169 chr2 131954834 131956192 + 0 NA exon (ENSMUSG00000027338.16, exon 3 of 3) protein_coding-exon (ENSMUSG00000027338.16, exon 3 of 3) 4651 ENSMUSG00000027338.16 ENSMUSG00000027338 ENSMUST00000110169 Prnd protein_coding Interval_154910 chr8 25007332 25007896 + 0 NA intron (ENSMUSG00000031555.15, intron 1 of 21) protein_coding-intron (ENSMUSG00000031555.15, intron 1 of 22) -9645 ENSMUSG00000031556.6 ENSMUSG00000031556 ENSMUST00000210536 Tm2d2 protein_coding Interval_136822 chr6 60992454 60994975 + 0 NA Intergenic Intergenic 24022 ENSMUSG00000108098.1 ENSMUSG00000108098 ENSMUST00000204855 Gm18838 processed_pseudogene Interval_161801 chr8 122884080 122884644 + 0 NA intron (ENSMUSG00000035569.17, intron 12 of 12) protein_coding-intron (ENSMUSG00000035569.17, intron 12 of 12) 13813 ENSMUSG00000110440.1 ENSMUSG00000110440 ENSMUST00000212728 Gm45894 antisense Interval_116800 chr4 117349286 117349596 + 0 NA intron (ENSMUSG00000028677.19, intron 2 of 2) protein_coding-intron (ENSMUSG00000028677.19, intron 2 of 14) 53297 ENSMUSG00000085749.1 ENSMUSG00000085749 ENSMUST00000139618 Gm12843 antisense Interval_46551 chr13 67070405 67071375 + 0 NA TTS (ENSMUSG00000100235.8) protein_coding-TTS (ENSMUSG00000100235.8) -9720 ENSMUSG00000090641.2 ENSMUSG00000090641 ENSMUST00000167565 Zfp712 protein_coding Interval_109865 chr3 149134245 149135105 + 0 NA Intergenic Intergenic -75596 ENSMUSG00000105357.1 ENSMUSG00000105357 ENSMUST00000195939 Gm42647 processed_pseudogene Interval_87918 chr19 57112674 57113417 + 0 NA intron (ENSMUSG00000025085.16, intron 6 of 20) protein_coding-intron (ENSMUSG00000025085.16, intron 6 of 25) -160915 ENSMUSG00000117684.1 ENSMUSG00000117684 ENSMUST00000237596 4930449E18Rik antisense Interval_160492 chr8 109970074 109970959 + 0 NA Intergenic Intergenic 3836 ENSMUSG00000110707.1 ENSMUSG00000110707 ENSMUST00000211847 Gm45795 processed_pseudogene Interval_150991 chr7 117435924 117436712 + 0 NA intron (ENSMUSG00000030657.11, intron 1 of 6) protein_coding-intron (ENSMUSG00000030657.11, intron 1 of 11) -39174 ENSMUSG00000030657.11 ENSMUSG00000030657 ENSMUST00000161889 Xylt1 protein_coding Interval_7251 chr1 128236004 128236212 + 0 NA intron (ENSMUSG00000056211.13, intron 7 of 7) protein_coding-intron (ENSMUSG00000056211.13, intron 26 of 26) -7856 ENSMUSG00000026353.9 ENSMUSG00000026353 ENSMUST00000189895 Ubxn4 protein_coding Interval_133242 chr5 150813699 150815261 + 0 NA Intergenic Intergenic -8379 ENSMUSG00000106692.1 ENSMUSG00000106692 ENSMUST00000201101 Gm36447 lincRNA Interval_173709 chrX 102253980 102254268 + 0 NA intron (ENSMUSG00000085568.7, intron 2 of 3) processed_transcript-intron (ENSMUSG00000085568.7, intron 2 of 2) 1401 ENSMUSG00000093428.1 ENSMUSG00000093428 ENSMUST00000176507 Gm26318 miRNA Interval_127239 chr5 101811916 101812215 + 0 NA TTS (ENSMUSG00000105632.1) TEC-TTS (ENSMUSG00000105632.1) 1573 ENSMUSG00000105632.1 ENSMUSG00000105632 ENSMUST00000200599 Gm43272 TEC Interval_65674 chr16 25043103 25043431 + 0 NA Intergenic Intergenic -16372 ENSMUSG00000096960.1 ENSMUSG00000096960 ENSMUST00000181655 A230028O05Rik lincRNA Interval_165068 chr9 44273428 44273977 + 0 NA TTS (ENSMUSG00000032131.16) protein_coding-TTS (ENSMUSG00000032131.16) 5898 ENSMUSG00000032131.16 ENSMUSG00000032131 ENSMUST00000160384 Abcg4 protein_coding Interval_99609 chr2 163515767 163517729 + 0 NA intron (ENSMUSG00000017950.16, intron 1 of 2) antisense-intron (ENSMUSG00000046840.16, intron 1 of 2) 2232 ENSMUSG00000088408.1 ENSMUSG00000088408 ENSMUST00000157783 Gm25881 snRNA Interval_64678 chr16 14116325 14117207 + 0 NA intron (ENSMUSG00000060657.8, intron 23 of 26) protein_coding-intron (ENSMUSG00000060657.8, intron 23 of 26) 11865 ENSMUSG00000098652.1 ENSMUSG00000098652 ENSMUST00000183739 Gm27671 miRNA Interval_135055 chr6 34998918 34999674 + 0 NA Intergenic Intergenic -10892 ENSMUSG00000029847.13 ENSMUSG00000029847 ENSMUST00000144079 Slc23a4 protein_coding Interval_112498 chr4 41629932 41630243 + 0 NA intron (ENSMUSG00000061322.15, intron 15 of 19) protein_coding-intron (ENSMUSG00000061322.15, intron 15 of 19) -1557 ENSMUSG00000061322.15 ENSMUSG00000061322 ENSMUST00000119127 Dnaic1 protein_coding Interval_96613 chr2 126528566 126528851 + 0 NA Intergenic Intergenic -28719 ENSMUSG00000060131.11 ENSMUSG00000060131 ENSMUST00000129187 Atp8b4 protein_coding Interval_21320 chr10 127939540 127940569 + 0 NA Intergenic Intergenic 8506 ENSMUSG00000090036.1 ENSMUSG00000090036 ENSMUST00000161584 Gm15900 processed_pseudogene Interval_154954 chr8 25255784 25257517 + 0 NA promoter-TSS (ENSMUSG00000065954.11) protein_coding-promoter-TSS (ENSMUSG00000065954.11) 49620 ENSMUSG00000110140.1 ENSMUSG00000110140 ENSMUST00000209774 5430421F17Rik lincRNA Interval_50117 chr14 8092382 8092911 + 0 NA TTS (ENSMUSG00000023156.4) protein_coding-TTS (ENSMUSG00000023156.4) 2568 ENSMUSG00000023156.4 ENSMUSG00000023156 ENSMUST00000180369 Rpp14 protein_coding Interval_19176 chr10 95309406 95311798 + 0 NA TTS (ENSMUSG00000045867.10) protein_coding-TTS (ENSMUSG00000045867.10) 4251 ENSMUSG00000112744.1 ENSMUSG00000112744 ENSMUST00000219461 Gm48880 TEC Interval_120764 chr4 150524664 150524967 + 0 NA intron (ENSMUSG00000039852.17, intron 10 of 22) protein_coding-intron (ENSMUSG00000039852.17, intron 4 of 16) 43729 ENSMUSG00000085213.1 ENSMUSG00000085213 ENSMUST00000128800 Gm13091 antisense Interval_119181 chr4 136047521 136049011 + 0 NA intron (ENSMUSG00000059291.15, intron 2 of 4) protein_coding-intron (ENSMUSG00000059291.15, intron 2 of 4) 4824 ENSMUSG00000059291.15 ENSMUSG00000059291 ENSMUST00000128733 Rpl11 protein_coding Interval_149097 chr7 93167099 93167745 + 0 NA Intergenic Intergenic -1412 ENSMUSG00000109196.1 ENSMUSG00000109196 ENSMUST00000209049 Gm44715 processed_pseudogene Interval_3300 chr1 55892984 55893726 + 0 NA Intergenic Intergenic -37886 ENSMUSG00000099950.1 ENSMUSG00000099950 ENSMUST00000188040 9130227L01Rik lincRNA Interval_19342 chr10 97279675 97279887 + 0 NA Intergenic Intergenic 37869 ENSMUSG00000111981.1 ENSMUSG00000111981 ENSMUST00000219755 Gm18515 processed_pseudogene Interval_108886 chr3 132988351 132989356 + 0 NA intron (ENSMUSG00000028018.15, intron 10 of 11) protein_coding-intron (ENSMUSG00000028018.15, intron 10 of 11) -40570 ENSMUSG00000104787.1 ENSMUSG00000104787 ENSMUST00000197045 Gm19148 processed_pseudogene Interval_77388 chr17 88374326 88375122 + 0 NA intron (ENSMUSG00000117351.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000117351.1, intron 1 of 1) 13975 ENSMUSG00000117351.1 ENSMUSG00000117351 ENSMUST00000234514 Gm31615 lincRNA Interval_106008 chr3 90601788 90602605 + 0 NA exon (ENSMUSG00000001021.13, exon 3 of 3) protein_coding-exon (ENSMUSG00000001021.13, exon 3 of 3) 292 ENSMUSG00000105518.1 ENSMUSG00000105518 ENSMUST00000107330 Gm42674 protein_coding Interval_69565 chr16 94312686 94314080 + 0 NA exon (ENSMUSG00000040820.16, exon 1 of 1) protein_coding-exon (ENSMUSG00000040820.16, exon 1 of 1) -15037 ENSMUSG00000022941.8 ENSMUSG00000022941 ENSMUST00000023660 Ripply3 protein_coding Interval_143076 chr6 149100538 149102112 + 0 NA exon (ENSMUSG00000030313.15, exon 1 of 21) protein_coding-exon (ENSMUSG00000030313.15, exon 1 of 21) -27219 ENSMUSG00000065198.1 ENSMUSG00000065198 ENSMUST00000083264 Gm23462 snRNA Interval_143616 chr7 13231579 13232730 + 0 NA Intergenic Intergenic -12008 ENSMUSG00000092427.1 ENSMUSG00000092427 ENSMUST00000172759 Vmn1r-ps69 unprocessed_pseudogene Interval_28501 chr11 76370437 76371168 + 0 NA intron (ENSMUSG00000020844.6, intron 1 of 1) protein_coding-intron (ENSMUSG00000020844.6, intron 1 of 7) 28266 ENSMUSG00000020844.6 ENSMUSG00000020844 ENSMUST00000131472 Nxn protein_coding Interval_19755 chr10 108523837 108524941 + 0 NA intron (ENSMUSG00000035864.14, intron 10 of 11) protein_coding-intron (ENSMUSG00000035864.14, intron 9 of 10) 41739 ENSMUSG00000112065.1 ENSMUSG00000112065 ENSMUST00000217917 Gm47466 processed_pseudogene Interval_135794 chr6 47401651 47402299 + 0 NA Intergenic Intergenic 31114 ENSMUSG00000107853.1 ENSMUSG00000107853 ENSMUST00000203098 Gm18584 processed_pseudogene Interval_110319 chr3 156773898 156774122 + 0 NA intron (ENSMUSG00000040037.13, intron 1 of 6) protein_coding-intron (ENSMUSG00000040037.13, intron 1 of 6) 36470 ENSMUSG00000105290.1 ENSMUSG00000105290 ENSMUST00000199492 Gm43528 TEC Interval_131564 chr5 138144336 138144591 + 0 NA TTS (ENSMUSG00000037007.17) protein_coding-TTS (ENSMUSG00000037007.17) 8436 ENSMUSG00000037007.17 ENSMUSG00000037007 ENSMUST00000132318 Zfp113 protein_coding Interval_156972 chr8 63156796 63157122 + 0 NA intron (ENSMUSG00000054162.15, intron 5 of 11) protein_coding-intron (ENSMUSG00000054162.15, intron 4 of 10) -42013 ENSMUSG00000109622.1 ENSMUSG00000109622 ENSMUST00000209973 Gm45517 TEC Interval_63299 chr15 100182086 100183319 + 0 NA intron (ENSMUSG00000023026.16, intron 21 of 37) protein_coding-intron (ENSMUSG00000023026.16, intron 16 of 32) 12609 ENSMUSG00000116366.1 ENSMUSG00000116366 ENSMUST00000229080 Gm49475 antisense Interval_127805 chr5 107944118 107944801 + 0 NA intron (ENSMUSG00000029270.10, intron 1 of 4) protein_coding-intron (ENSMUSG00000029270.10, intron 1 of 4) 28539 ENSMUSG00000029270.10 ENSMUSG00000029270 ENSMUST00000153172 Dipk1a protein_coding Interval_163710 chr9 24776463 24778183 + 0 NA intron (ENSMUSG00000111275.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000111275.1, intron 1 of 2) 856 ENSMUSG00000111275.1 ENSMUSG00000111275 ENSMUST00000213183 Gm29824 lincRNA Interval_161545 chr8 121107842 121108688 + 0 NA promoter-TSS (ENSMUSG00000031816.15) protein_coding-promoter-TSS (ENSMUSG00000031816.15) -6788 ENSMUSG00000031816.15 ENSMUSG00000031816 ENSMUST00000128503 Mthfsd protein_coding Interval_80169 chr18 37997772 37999192 + 0 NA promoter-TSS (ENSMUSG00000024451.9) protein_coding-promoter-TSS (ENSMUSG00000024451.9) 251 ENSMUSG00000024451.9 ENSMUSG00000024451 ENSMUST00000236134 Arap3 protein_coding Interval_112854 chr4 45540089 45540386 + 0 NA Intergenic Intergenic -8506 ENSMUSG00000065322.1 ENSMUSG00000065322 ENSMUST00000083388 Gm22055 snRNA Interval_165766 chr9 52287299 52287558 + 0 NA Intergenic Intergenic -3771 ENSMUSG00000077796.1 ENSMUSG00000077796 ENSMUST00000104608 Gm25562 snoRNA Interval_27822 chr11 70220291 70222215 + 0 NA promoter-TSS (ENSMUSG00000044367.7) protein_coding-promoter-TSS (ENSMUSG00000044367.7) -189 ENSMUSG00000044367.7 ENSMUSG00000044367 ENSMUST00000141290 Slc16a13 protein_coding Interval_50907 chr14 20702226 20703600 + 0 NA promoter-TSS (ENSMUSG00000063787.4) protein_coding-promoter-TSS (ENSMUSG00000063787.4) 115 ENSMUSG00000097577.2 ENSMUSG00000097577 ENSMUST00000224976 6230400D17Rik antisense Interval_174803 chrX 166932337 166932691 + 0 NA Intergenic Intergenic -2955 ENSMUSG00000082019.1 ENSMUSG00000082019 ENSMUST00000119174 Gm15231 processed_pseudogene Interval_74715 chr17 56123499 56125376 + 0 NA exon (ENSMUSG00000001227.12, exon 17 of 17) protein_coding-exon (ENSMUSG00000001227.12, exon 17 of 17) -2436 ENSMUSG00000037095.8 ENSMUSG00000037095 ENSMUST00000041357 Lrg1 protein_coding Interval_89433 chr2 20654487 20655752 + 0 NA intron (ENSMUSG00000036617.17, intron 4 of 5) protein_coding-intron (ENSMUSG00000036617.17, intron 3 of 18) 58115 ENSMUSG00000086418.1 ENSMUSG00000086418 ENSMUST00000137186 Gm13362 antisense Interval_107217 chr3 104682932 104683842 + 0 NA Intergenic Intergenic -13377 ENSMUSG00000101641.1 ENSMUSG00000101641 ENSMUST00000191526 Gm29560 TEC Interval_89368 chr2 19955471 19955737 + 0 NA intron (ENSMUSG00000036617.17, intron 1 of 7) protein_coding-intron (ENSMUSG00000036617.17, intron 1 of 7) 11793 ENSMUSG00000083777.1 ENSMUSG00000083777 ENSMUST00000119977 Gm13361 processed_pseudogene Interval_110808 chr4 8608210 8608498 + 0 NA TTS (ENSMUSG00000047187.9) protein_coding-TTS (ENSMUSG00000047187.9) 65228 ENSMUSG00000082122.1 ENSMUSG00000082122 ENSMUST00000120923 Gm11809 processed_pseudogene Interval_62028 chr15 85984346 85984890 + 0 NA intron (ENSMUSG00000016028.11, intron 1 of 34) protein_coding-intron (ENSMUSG00000016028.11, intron 1 of 34) -82419 ENSMUSG00000016028.11 ENSMUSG00000016028 ENSMUST00000227450 Celsr1 protein_coding Interval_126427 chr5 88485430 88485728 + 0 NA Intergenic Intergenic -2396 ENSMUSG00000029286.12 ENSMUSG00000029286 ENSMUST00000031222 Enam protein_coding Interval_136997 chr6 65826892 65827730 + 0 NA intron (ENSMUSG00000029913.14, intron 2 of 2) protein_coding-intron (ENSMUSG00000029913.14, intron 2 of 10) 36965 ENSMUSG00000088832.1 ENSMUSG00000088832 ENSMUST00000158207 Gm23543 snRNA Interval_125690 chr5 73272347 73273871 + 0 NA exon (ENSMUSG00000106999.1, exon 1 of 1) TEC-exon (ENSMUSG00000106999.1, exon 1 of 1) 237 ENSMUSG00000106999.1 ENSMUSG00000106999 ENSMUST00000201656 Gm42734 TEC Interval_171975 chr9 123103713 123104808 + 0 NA intron (ENSMUSG00000025786.17, intron 1 of 6) protein_coding-intron (ENSMUSG00000025786.17, intron 1 of 7) 8887 ENSMUSG00000025786.17 ENSMUSG00000025786 ENSMUST00000130717 Zdhhc3 protein_coding Interval_169702 chr9 100491627 100491807 + 0 NA TTS (ENSMUSG00000032475.15) protein_coding-TTS (ENSMUSG00000032475.15) -21108 ENSMUSG00000044244.18 ENSMUSG00000044244 ENSMUST00000122880 Il20rb protein_coding Interval_108431 chr3 127124200 127124963 + 0 NA exon (ENSMUSG00000032826.19, exon 1 of 3) protein_coding-exon (ENSMUSG00000032826.19, exon 1 of 3) 15909 ENSMUSG00000104963.1 ENSMUSG00000104963 ENSMUST00000199556 Gm42974 TEC Interval_116386 chr4 111219123 111219703 + 0 NA intron (ENSMUSG00000061298.14, intron 1 of 6) protein_coding-intron (ENSMUSG00000061298.14, intron 5 of 12) -70705 ENSMUSG00000081068.1 ENSMUSG00000081068 ENSMUST00000121030 Gm12804 processed_pseudogene Interval_34506 chr12 4729103 4730223 + 0 NA intron (ENSMUSG00000079177.4, intron 6 of 7) protein_coding-intron (ENSMUSG00000079177.4, intron 6 of 7) 8655 ENSMUSG00000079177.4 ENSMUSG00000079177 ENSMUST00000220075 Fam228a protein_coding Interval_54486 chr14 70176431 70178425 + 0 NA promoter-TSS (ENSMUSG00000022090.10) protein_coding-promoter-TSS (ENSMUSG00000022090.10) -609 ENSMUSG00000022090.10 ENSMUSG00000022090 ENSMUST00000123125 Pdlim2 protein_coding Interval_158101 chr8 78735327 78736007 + 0 NA Intergenic Intergenic 38878 ENSMUSG00000112190.1 ENSMUSG00000112190 ENSMUST00000218647 Gm47209 unitary_pseudogene Interval_173273 chrX 75780302 75780718 + 0 NA Intergenic Intergenic 56838 ENSMUSG00000081996.1 ENSMUSG00000081996 ENSMUST00000117092 Gm7153 processed_pseudogene Interval_110167 chr3 153927414 153928118 + 0 NA intron (ENSMUSG00000062908.12, intron 5 of 5) protein_coding-intron (ENSMUSG00000062908.12, intron 10 of 11) 10043 ENSMUSG00000062908.12 ENSMUSG00000062908 ENSMUST00000135724 Acadm protein_coding Interval_7003 chr1 121708164 121708519 + 0 NA Intergenic Intergenic 1826 ENSMUSG00000102488.1 ENSMUSG00000102488 ENSMUST00000192952 Gm37920 TEC Interval_67732 chr16 56553261 56553529 + 0 NA intron (ENSMUSG00000035258.15, intron 2 of 35) protein_coding-intron (ENSMUSG00000035258.15, intron 2 of 39) 75495 ENSMUSG00000035258.15 ENSMUSG00000035258 ENSMUST00000096012 Abi3bp protein_coding Interval_26469 chr11 58030573 58031550 + 0 NA intron (ENSMUSG00000037331.15, intron 1 of 18) protein_coding-intron (ENSMUSG00000037331.15, intron 1 of 18) 21997 ENSMUSG00000037331.15 ENSMUSG00000037331 ENSMUST00000140500 Larp1 protein_coding Interval_160062 chr8 106123497 106124105 + 0 NA intron (ENSMUSG00000031902.10, intron 10 of 10) protein_coding-intron (ENSMUSG00000031902.10, intron 9 of 9) 12884 ENSMUSG00000084128.10 ENSMUSG00000084128 ENSMUST00000155164 Esrp2 protein_coding Interval_10443 chr1 170894469 170895899 + 0 NA Intergenic Intergenic 10119 ENSMUSG00000096968.1 ENSMUSG00000096968 ENSMUST00000180542 Gm26620 protein_coding Interval_148139 chr7 79450812 79451862 + 0 NA promoter-TSS (ENSMUSG00000039176.17) protein_coding-promoter-TSS (ENSMUSG00000039176.17) 585 ENSMUSG00000039176.17 ENSMUSG00000039176 ENSMUST00000125562 Polg protein_coding Interval_10250 chr1 167583148 167584208 + 0 NA Intergenic Intergenic -14782 ENSMUSG00000015843.10 ENSMUSG00000015843 ENSMUST00000111380 Rxrg protein_coding Interval_21703 chr11 3804746 3805812 + 0 NA intron (ENSMUSG00000020435.17, intron 2 of 2) protein_coding-intron (ENSMUSG00000020435.17, intron 2 of 13) 16387 ENSMUSG00000088352.1 ENSMUSG00000088352 ENSMUST00000157727 Gm24013 snoRNA Interval_152088 chr7 129048253 129048893 + 0 NA Intergenic Intergenic 6503 ENSMUSG00000108785.1 ENSMUSG00000108785 ENSMUST00000206489 Gm4259 processed_pseudogene Interval_88692 chr2 9800082 9800312 + 0 NA Intergenic Intergenic 75202 ENSMUSG00000015619.10 ENSMUSG00000015619 ENSMUST00000142305 Gata3 protein_coding Interval_123231 chr5 30777191 30777735 + 0 NA promoter-TSS (ENSMUSG00000029168.14) protein_coding-promoter-TSS (ENSMUSG00000029168.14) -10727 ENSMUSG00000029168.14 ENSMUSG00000029168 ENSMUST00000138625 Dpysl5 protein_coding Interval_123530 chr5 33247517 33248715 + 0 NA TTS (ENSMUSG00000037373.12) protein_coding-TTS (ENSMUSG00000037373.12) -7202 ENSMUSG00000107161.1 ENSMUSG00000107161 ENSMUST00000202021 Gm43850 processed_pseudogene Interval_108175 chr3 122158882 122159379 + 0 NA intron (ENSMUSG00000028125.14, intron 17 of 26) protein_coding-intron (ENSMUSG00000028125.14, intron 40 of 49) -6511 ENSMUSG00000105351.1 ENSMUSG00000105351 ENSMUST00000198223 Gm43157 processed_pseudogene Interval_83474 chr18 86460103 86460604 + 0 NA intron (ENSMUSG00000050321.3, intron 4 of 10) protein_coding-intron (ENSMUSG00000050321.3, intron 4 of 10) 13576 ENSMUSG00000117778.1 ENSMUSG00000117778 ENSMUST00000236142 Gm50384 antisense Interval_45839 chr13 58471610 58472078 + 0 NA Intergenic Intergenic 28823 ENSMUSG00000114654.1 ENSMUSG00000114654 ENSMUST00000225848 Gm47918 lincRNA Interval_103789 chr3 52985372 52985968 + 0 NA intron (ENSMUSG00000027742.13, intron 18 of 18) protein_coding-intron (ENSMUSG00000027742.13, intron 18 of 18) -25304 ENSMUSG00000103886.1 ENSMUSG00000103886 ENSMUST00000194234 Gm37007 processed_pseudogene Interval_6237 chr1 103762456 103763046 + 0 NA Intergenic Intergenic 38406 ENSMUSG00000102325.1 ENSMUSG00000102325 ENSMUST00000192862 Gm37789 TEC Interval_155907 chr8 40948608 40949180 + 0 NA intron (ENSMUSG00000031595.9, intron 2 of 5) protein_coding-intron (ENSMUSG00000031595.9, intron 2 of 5) 22682 ENSMUSG00000031595.9 ENSMUSG00000031595 ENSMUST00000034004 Pdgfrl protein_coding Interval_3676 chr1 60649813 60650219 + 0 NA Intergenic Intergenic -36213 ENSMUSG00000088973.1 ENSMUSG00000088973 ENSMUST00000158348 Gm23762 miRNA Interval_110221 chr3 154506359 154507244 + 0 NA Intergenic Intergenic 90297 ENSMUSG00000047583.9 ENSMUSG00000047583 ENSMUST00000122976 Tyw3 protein_coding Interval_90113 chr2 28205027 28206754 + 0 NA exon (ENSMUSG00000026833.18, exon 1 of 6) protein_coding-exon (ENSMUSG00000026833.18, exon 1 of 6) 12898 ENSMUSG00000026833.18 ENSMUSG00000026833 ENSMUST00000028177 Olfm1 protein_coding Interval_103794 chr3 53016590 53017395 + 0 NA intron (ENSMUSG00000027742.13, intron 1 of 18) protein_coding-intron (ENSMUSG00000027742.13, intron 1 of 18) 226 ENSMUSG00000027742.13 ENSMUSG00000027742 ENSMUST00000193043 Cog6 protein_coding Interval_108268 chr3 123154472 123154681 + 0 NA intron (ENSMUSG00000050315.14, intron 1 of 3) protein_coding-intron (ENSMUSG00000050315.14, intron 1 of 4) 9896 ENSMUSG00000105562.1 ENSMUSG00000105562 ENSMUST00000197747 Gm43287 TEC Interval_34190 chr11 121185279 121185772 + 0 NA intron (ENSMUSG00000025169.6, intron 7 of 8) protein_coding-intron (ENSMUSG00000025169.6, intron 7 of 8) 19186 ENSMUSG00000025169.6 ENSMUSG00000025169 ENSMUST00000026169 Ogfod3 protein_coding Interval_104995 chr3 79586868 79587406 + 0 NA Intergenic Intergenic -4351 ENSMUSG00000027804.13 ENSMUSG00000027804 ENSMUST00000160799 Ppid protein_coding Interval_153151 chr7 141671165 141672149 + 0 NA Intergenic Intergenic -16349 ENSMUSG00000048191.15 ENSMUSG00000048191 ENSMUST00000190907 Muc6 protein_coding Interval_97398 chr2 135761412 135761643 + 0 NA intron (ENSMUSG00000039943.16, intron 2 of 2) protein_coding-intron (ENSMUSG00000039943.16, intron 1 of 36) 19697 ENSMUSG00000039943.16 ENSMUSG00000039943 ENSMUST00000147122 Plcb4 protein_coding Interval_163 JH584304.1 43249 45249 + 0 NA NA NA NA NA Interval_39346 chr12 86836352 86837027 + 0 NA Intergenic Intergenic 9778 ENSMUSG00000113555.1 ENSMUSG00000113555 ENSMUST00000222765 Gm10095 processed_pseudogene Interval_75549 chr17 67959267 67959485 + 0 NA intron (ENSMUSG00000024043.13, intron 1 of 17) protein_coding-intron (ENSMUSG00000024043.13, intron 1 of 17) -86328 ENSMUSG00000024043.13 ENSMUSG00000024043 ENSMUST00000170581 Arhgap28 protein_coding Interval_61529 chr15 82190956 82191248 + 0 NA intron (ENSMUSG00000022463.8, intron 12 of 20) protein_coding-intron (ENSMUSG00000022463.8, intron 11 of 18) 5586 ENSMUSG00000116226.1 ENSMUSG00000116226 ENSMUST00000229390 Gm49502 TEC Interval_21730 chr11 3997851 3999178 + 0 NA exon (ENSMUSG00000049721.14, exon 4 of 4) protein_coding-exon (ENSMUSG00000049721.14, exon 4 of 4) -3943 ENSMUSG00000084170.1 ENSMUSG00000084170 ENSMUST00000121403 Gm11954 processed_pseudogene Interval_124032 chr5 37576629 37577093 + 0 NA intron (ENSMUSG00000029123.8, intron 3 of 11) protein_coding-intron (ENSMUSG00000029123.8, intron 3 of 11) 140310 ENSMUSG00000029123.8 ENSMUSG00000029123 ENSMUST00000094836 Stk32b protein_coding Interval_108717 chr3 130694224 130695521 + 0 NA Intergenic Intergenic 11077 ENSMUSG00000105466.1 ENSMUSG00000105466 ENSMUST00000197053 Gm42998 TEC Interval_126872 chr5 96333944 96334170 + 0 NA Intergenic Intergenic -40149 ENSMUSG00000034687.8 ENSMUSG00000034687 ENSMUST00000198016 Fras1 protein_coding Interval_39166 chr12 85531384 85531813 + 0 NA intron (ENSMUSG00000114163.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000114163.1, intron 1 of 2) 2000 ENSMUSG00000114163.1 ENSMUSG00000114163 ENSMUST00000220590 Gm32296 lincRNA Interval_35582 chr12 25026947 25027892 + 0 NA intron (ENSMUSG00000036333.11, intron 1 of 3) protein_coding-intron (ENSMUSG00000036333.11, intron 22 of 31) -37273 ENSMUSG00000114148.1 ENSMUSG00000114148 ENSMUST00000220747 Gm47701 lincRNA Interval_82547 chr18 75056589 75056826 + 0 NA exon (ENSMUSG00000035765.10, exon 5 of 17) protein_coding-exon (ENSMUSG00000035765.10, exon 5 of 17) 32851 ENSMUSG00000098305.1 ENSMUSG00000098305 ENSMUST00000185185 Gm27781 rRNA Interval_43445 chr13 31016940 31017216 + 0 NA Intergenic Intergenic 7901 ENSMUSG00000082014.2 ENSMUSG00000082014 ENSMUST00000120294 Gm11371 processed_pseudogene Interval_118393 chr4 131090981 131091184 + 0 NA Intergenic Intergenic -80608 ENSMUSG00000086262.7 ENSMUSG00000086262 ENSMUST00000153810 A930031H19Rik lincRNA Interval_31599 chr11 101617016 101618545 + 0 NA Intergenic Intergenic 7080 ENSMUSG00000086617.1 ENSMUSG00000086617 ENSMUST00000139424 Gm11635 lincRNA Interval_127944 chr5 109690321 109691793 + 0 NA promoter-TSS (ENSMUSG00000072763.2) protein_coding-promoter-TSS (ENSMUSG00000072763.2) -16 ENSMUSG00000072763.2 ENSMUSG00000072763 ENSMUST00000092720 5430403G16Rik protein_coding Interval_132329 chr5 144214048 144214987 + 0 NA exon (ENSMUSG00000066621.12, exon 1 of 4) protein_coding-exon (ENSMUSG00000066621.12, exon 1 of 4) 9006 ENSMUSG00000066621.12 ENSMUSG00000066621 ENSMUST00000196360 Tecpr1 protein_coding Interval_67517 chr16 50165819 50166236 + 0 NA Intergenic Intergenic 54954 ENSMUSG00000098028.1 ENSMUSG00000098028 ENSMUST00000182962 Gm8824 processed_pseudogene Interval_6996 chr1 121619883 121620374 + 0 NA Intergenic Intergenic 25721 ENSMUSG00000102006.1 ENSMUSG00000102006 ENSMUST00000185259 Gm28591 processed_pseudogene Interval_14515 chr10 34619986 34620704 + 0 NA Intergenic Intergenic 136813 ENSMUSG00000019779.15 ENSMUSG00000019779 ENSMUST00000215594 Frk protein_coding Interval_83504 chr18 88178882 88179530 + 0 NA Intergenic Intergenic -82656 ENSMUSG00000117801.1 ENSMUSG00000117801 ENSMUST00000237897 Gm50391 processed_pseudogene Interval_98878 chr2 155737629 155738591 + 0 NA Intergenic Intergenic -2244 ENSMUSG00000092123.1 ENSMUSG00000092123 ENSMUST00000166589 Gm17581 protein_coding Interval_109914 chr3 151386100 151386340 + 0 NA Intergenic Intergenic -51676 ENSMUSG00000039167.12 ENSMUSG00000039167 ENSMUST00000198893 Adgrl4 protein_coding Interval_26489 chr11 58125227 58126936 + 0 NA promoter-TSS (ENSMUSG00000087629.1) antisense-promoter-TSS (ENSMUSG00000087629.1) 13 ENSMUSG00000087629.1 ENSMUSG00000087629 ENSMUST00000129126 Gm12246 antisense Interval_37799 chr12 72052470 72054878 + 0 NA Intergenic Intergenic -4415 ENSMUSG00000114155.1 ENSMUSG00000114155 ENSMUST00000221336 Gm7986 processed_pseudogene Interval_148185 chr7 79694605 79694828 + 0 NA TTS (ENSMUSG00000046591.10) protein_coding-TTS (ENSMUSG00000046591.10) -15655 ENSMUSG00000039133.8 ENSMUSG00000039133 ENSMUST00000197011 9330171B17Rik antisense Interval_162890 chr9 11687176 11687500 + 0 NA Intergenic Intergenic -102493 ENSMUSG00000111503.1 ENSMUSG00000111503 ENSMUST00000214628 Gm47034 lincRNA Interval_131960 chr5 141102868 141103054 + 0 NA Intergenic Intergenic 22530 ENSMUSG00000093344.1 ENSMUSG00000093344 ENSMUST00000175603 Gm26113 miRNA Interval_151453 chr7 122630953 122632041 + 0 NA intron (ENSMUSG00000052889.11, intron 17 of 17) protein_coding-intron (ENSMUSG00000052889.11, intron 16 of 16) -1951 ENSMUSG00000052889.11 ENSMUSG00000052889 ENSMUST00000206495 Prkcb protein_coding Interval_98661 chr2 153952855 153954533 + 0 NA intron (ENSMUSG00000074665.11, intron 10 of 15) protein_coding-intron (ENSMUSG00000074665.11, intron 7 of 12) 15473 ENSMUSG00000074665.11 ENSMUSG00000074665 ENSMUST00000099181 Bpifb4 protein_coding Interval_116465 chr4 113596716 113597100 + 0 NA intron (ENSMUSG00000078598.11, intron 40 of 57) protein_coding-intron (ENSMUSG00000078598.11, intron 40 of 58) 228721 ENSMUSG00000083384.1 ENSMUSG00000083384 ENSMUST00000119615 Gm12813 unprocessed_pseudogene Interval_104519 chr3 67344668 67344908 + 0 NA intron (ENSMUSG00000034544.17, intron 7 of 8) protein_coding-intron (ENSMUSG00000034544.17, intron 6 of 8) -29337 ENSMUSG00000048416.15 ENSMUSG00000048416 ENSMUST00000061322 Mlf1 protein_coding Interval_6905 chr1 120567027 120568022 + 0 NA Intergenic Intergenic -34894 ENSMUSG00000058665.8 ENSMUSG00000058665 ENSMUST00000079721 En1 protein_coding Interval_162249 chr8 126451269 126451771 + 0 NA intron (ENSMUSG00000090290.2, intron 13 of 29) protein_coding-intron (ENSMUSG00000090290.2, intron 13 of 29) 23545 ENSMUSG00000090290.2 ENSMUSG00000090290 ENSMUST00000170518 Tarbp1 protein_coding Interval_10128 chr1 165966261 165967454 + 0 NA intron (ENSMUSG00000026565.18, intron 1 of 6) protein_coding-intron (ENSMUSG00000026565.18, intron 1 of 14) 25239 ENSMUSG00000099008.1 ENSMUSG00000099008 ENSMUST00000184037 Gm17976 processed_pseudogene Interval_35165 chr12 17716989 17717412 + 0 NA intron (ENSMUSG00000071379.2, intron 1 of 3) protein_coding-intron (ENSMUSG00000071379.2, intron 1 of 3) -11026 ENSMUSG00000071379.2 ENSMUSG00000071379 ENSMUST00000222944 Hpcal1 protein_coding Interval_155710 chr8 36356567 36356758 + 0 NA Intergenic Intergenic 16971 ENSMUSG00000098154.2 ENSMUSG00000098154 ENSMUST00000183049 Gm5787 processed_pseudogene Interval_124009 chr5 37162771 37163907 + 0 NA exon (ENSMUSG00000117286.1, exon 1 of 1) protein_coding-exon (ENSMUSG00000117286.1, exon 1 of 1) 49555 ENSMUSG00000113373.1 ENSMUSG00000113373 ENSMUST00000212997 Jakmip1 protein_coding Interval_1382 chr1 21210807 21211053 + 0 NA Intergenic Intergenic -7645 ENSMUSG00000025933.15 ENSMUSG00000025933 ENSMUST00000027064 Tmem14a protein_coding Interval_115097 chr4 89688010 89689244 + 0 NA exon (ENSMUSG00000043753.2, exon 1 of 2) protein_coding-exon (ENSMUSG00000043753.2, exon 1 of 2) 9191 ENSMUSG00000043753.2 ENSMUSG00000043753 ENSMUST00000052478 Dmrta1 protein_coding Interval_111385 chr4 20090848 20091213 + 0 NA Intergenic Intergenic 48978 ENSMUSG00000073987.4 ENSMUSG00000073987 ENSMUST00000098242 Ggh protein_coding Interval_160077 chr8 106232779 106233257 + 0 NA intron (ENSMUSG00000060098.11, intron 5 of 9) protein_coding-intron (ENSMUSG00000060098.11, intron 5 of 17) -1507 ENSMUSG00000060098.11 ENSMUSG00000060098 ENSMUST00000134151 Prmt7 protein_coding Interval_153619 chr8 3913284 3914876 + 0 NA Intergenic Intergenic 12733 ENSMUSG00000065987.12 ENSMUSG00000065987 ENSMUST00000188386 Cd209b protein_coding Interval_11414 chr1 181821086 181821673 + 0 NA promoter-TSS (ENSMUSG00000004880.11) protein_coding-promoter-TSS (ENSMUSG00000004880.11) -7679 ENSMUSG00000064970.1 ENSMUSG00000064970 ENSMUST00000083036 Gm23690 snRNA Interval_170897 chr9 111757762 111758318 + 0 NA Intergenic Intergenic -67711 ENSMUSG00000032502.8 ENSMUSG00000032502 ENSMUST00000162345 Stac protein_coding Interval_57972 chr15 25795596 25796803 + 0 NA intron (ENSMUSG00000022272.17, intron 29 of 40) protein_coding-intron (ENSMUSG00000022272.17, intron 9 of 20) 27643 ENSMUSG00000022272.17 ENSMUSG00000022272 ENSMUST00000145587 Myo10 protein_coding Interval_113669 chr4 57429007 57429346 + 0 NA Intergenic Intergenic -14980 ENSMUSG00000081540.3 ENSMUSG00000081540 ENSMUST00000120064 Gm12538 processed_pseudogene Interval_54505 chr14 70316582 70317085 + 0 NA exon (ENSMUSG00000022094.15, exon 2 of 2) protein_coding-exon (ENSMUSG00000022094.15, exon 2 of 2) -5593 ENSMUSG00000022094.15 ENSMUSG00000022094 ENSMUST00000142598 Slc39a14 protein_coding Interval_80240 chr18 38483290 38484454 + 0 NA Intergenic Intergenic -2569 ENSMUSG00000118112.1 ENSMUSG00000118112 ENSMUST00000236084 Gm50349 processed_pseudogene Interval_56140 chr14 106679858 106680245 + 0 NA Intergenic Intergenic 18247 ENSMUSG00000091723.2 ENSMUSG00000091723 ENSMUST00000167629 Gm17366 processed_pseudogene Interval_22592 chr11 12036423 12038065 + 0 NA exon (ENSMUSG00000020176.17, exon 1 of 17) protein_coding-exon (ENSMUSG00000020176.17, exon 1 of 17) -10920 ENSMUSG00000020176.17 ENSMUSG00000020176 ENSMUST00000143915 Grb10 protein_coding Interval_92129 chr2 53598812 53599019 + 0 NA Intergenic Intergenic 46989 ENSMUSG00000080716.1 ENSMUSG00000080716 ENSMUST00000119017 Gm13503 processed_pseudogene Interval_21549 chr10 129753199 129753517 + 0 NA TTS (ENSMUSG00000050478.3) protein_coding-TTS (ENSMUSG00000050478.3) 4435 ENSMUSG00000050478.3 ENSMUSG00000050478 ENSMUST00000059038 Olfr807 protein_coding Interval_128405 chr5 113152599 113154201 + 0 NA intron (ENSMUSG00000106659.1, intron 2 of 2) protein_coding-intron (ENSMUSG00000051339.10, intron 1 of 7) 8072 ENSMUSG00000106659.1 ENSMUSG00000106659 ENSMUST00000196278 Gm42161 lincRNA Interval_43961 chr13 38471696 38472027 + 0 NA intron (ENSMUSG00000039004.6, intron 2 of 3) protein_coding-intron (ENSMUSG00000039004.6, intron 2 of 6) -10056 ENSMUSG00000114895.1 ENSMUSG00000114895 ENSMUST00000225893 4930579J19Rik antisense Interval_121794 chr5 8328263 8328474 + 0 NA exon (ENSMUSG00000106265.1, exon 1 of 1) TEC-exon (ENSMUSG00000106265.1, exon 1 of 1) 1027 ENSMUSG00000106265.1 ENSMUSG00000106265 ENSMUST00000198595 Gm42490 TEC Interval_138248 chr6 86583912 86586248 + 0 NA Intergenic Intergenic -6350 ENSMUSG00000108059.1 ENSMUSG00000108059 ENSMUST00000204543 Gm44369 TEC Interval_25954 chr11 53087701 53088670 + 0 NA intron (ENSMUSG00000036264.9, intron 6 of 15) protein_coding-intron (ENSMUSG00000036264.9, intron 6 of 15) 31871 ENSMUSG00000087668.1 ENSMUSG00000087668 ENSMUST00000137096 Gm11186 antisense Interval_106281 chr3 95110539 95111673 + 0 NA promoter-TSS (ENSMUSG00000008958.14) protein_coding-promoter-TSS (ENSMUSG00000008958.14) -5420 ENSMUSG00000008958.14 ENSMUSG00000008958 ENSMUST00000152333 Vps72 protein_coding Interval_15806 chr10 57218749 57219377 + 0 NA Intergenic Intergenic 45033 ENSMUSG00000088253.1 ENSMUSG00000088253 ENSMUST00000157628 Gm24285 snRNA Interval_45616 chr13 56267625 56268374 + 0 NA Intergenic Intergenic -15836 ENSMUSG00000048904.5 ENSMUSG00000048904 ENSMUST00000058475 Neurog1 protein_coding Interval_152938 chr7 139930102 139931674 + 0 NA intron (ENSMUSG00000066129.15, intron 6 of 13) protein_coding-intron (ENSMUSG00000066129.15, intron 23 of 30) -4858 ENSMUSG00000066129.15 ENSMUSG00000066129 ENSMUST00000210154 Kndc1 protein_coding Interval_59727 chr15 58927027 58927905 + 0 NA exon (ENSMUSG00000050891.10, exon 2 of 2) protein_coding-exon (ENSMUSG00000050891.10, exon 2 of 2) -6342 ENSMUSG00000022354.4 ENSMUSG00000022354 ENSMUST00000228595 Ndufb9 protein_coding Interval_134485 chr6 29072203 29072490 + 0 NA exon (ENSMUSG00000059201.12, exon 3 of 3) protein_coding-exon (ENSMUSG00000059201.12, exon 3 of 3) 6884 ENSMUSG00000059201.12 ENSMUSG00000059201 ENSMUST00000169505 Lep protein_coding Interval_140958 chr6 123045232 123045427 + 0 NA Intergenic Intergenic -4669 ENSMUSG00000030147.12 ENSMUSG00000030147 ENSMUST00000078559 Clec4b1 protein_coding Interval_15516 chr10 50507576 50508160 + 0 NA Intergenic Intergenic 15401 ENSMUSG00000112529.1 ENSMUSG00000112529 ENSMUST00000220373 Gm46199 processed_pseudogene Interval_153116 chr7 141446425 141448028 + 0 NA promoter-TSS (ENSMUSG00000025508.13) protein_coding-promoter-TSS (ENSMUSG00000025508.13) -405 ENSMUSG00000025508.13 ENSMUSG00000025508 ENSMUST00000134636 Rplp2 protein_coding Interval_68802 chr16 87026905 87027102 + 0 NA intron (ENSMUSG00000116555.1, intron 4 of 6) lincRNA-intron (ENSMUSG00000116555.1, intron 4 of 6) 22257 ENSMUSG00000116555.1 ENSMUSG00000116555 ENSMUST00000231899 Gm38477 lincRNA Interval_71923 chr17 27027450 27028946 + 0 NA exon (ENSMUSG00000048731.15, exon 4 of 4) protein_coding-exon (ENSMUSG00000048731.15, exon 4 of 4) 389 ENSMUSG00000057789.14 ENSMUSG00000057789 ENSMUST00000143158 Bak1 protein_coding Interval_90115 chr2 28219357 28219599 + 0 NA intron (ENSMUSG00000026833.18, intron 4 of 5) protein_coding-intron (ENSMUSG00000026833.18, intron 4 of 5) 26486 ENSMUSG00000026833.18 ENSMUSG00000026833 ENSMUST00000028177 Olfm1 protein_coding Interval_80634 chr18 44898118 44899122 + 0 NA Intergenic Intergenic 43385 ENSMUSG00000034653.11 ENSMUSG00000034653 ENSMUST00000202176 Ythdc2 protein_coding Interval_102781 chr3 31000027 31000374 + 0 NA intron (ENSMUSG00000037643.14, intron 1 of 17) protein_coding-intron (ENSMUSG00000037643.14, intron 1 of 17) 25551 ENSMUSG00000102741.1 ENSMUSG00000102741 ENSMUST00000193442 Gm2979 processed_pseudogene Interval_4361 chr1 73036574 73037100 + 0 NA Intergenic Intergenic 20801 ENSMUSG00000101968.6 ENSMUSG00000101968 ENSMUST00000190525 1700027A15Rik antisense Interval_83401 chr18 84911274 84913657 + 0 NA Intergenic Intergenic -22563 ENSMUSG00000034391.12 ENSMUSG00000034391 ENSMUST00000225015 Fbxo15 protein_coding Interval_51550 chr14 30056083 30056580 + 0 NA exon (ENSMUSG00000015968.18, exon 1 of 3) protein_coding-exon (ENSMUSG00000015968.18, exon 1 of 3) 183 ENSMUSG00000015968.18 ENSMUSG00000015968 ENSMUST00000223985 Cacna1d protein_coding Interval_12383 chr1 192805513 192805908 + 0 NA Intergenic Intergenic 15417 ENSMUSG00000103874.1 ENSMUSG00000103874 ENSMUST00000195130 Gm38360 processed_pseudogene Interval_81794 chr18 64806288 64806623 + 0 NA promoter-TSS (ENSMUSG00000118045.1) lincRNA-promoter-TSS (ENSMUSG00000118045.1) 41 ENSMUSG00000118045.1 ENSMUSG00000118045 ENSMUST00000237689 Gm29860 lincRNA Interval_8304 chr1 137070071 137070319 + 0 NA Intergenic Intergenic -79925 ENSMUSG00000088970.1 ENSMUSG00000088970 ENSMUST00000158345 Gm23763 snRNA Interval_93904 chr2 78808771 78809320 + 0 NA Intergenic Intergenic 36408 ENSMUSG00000084101.1 ENSMUSG00000084101 ENSMUST00000120765 Gm17014 processed_pseudogene Interval_96454 chr2 123385447 123385974 + 0 NA Intergenic Intergenic 111786 ENSMUSG00000084372.1 ENSMUSG00000084372 ENSMUST00000119363 Gm13988 processed_pseudogene Interval_119730 chr4 139555838 139556833 + 0 NA intron (ENSMUSG00000041025.15, intron 4 of 11) protein_coding-intron (ENSMUSG00000041025.15, intron 3 of 10) -18385 ENSMUSG00000041025.15 ENSMUSG00000041025 ENSMUST00000174078 Iffo2 protein_coding Interval_9759 chr1 161913051 161913445 + 0 NA Intergenic Intergenic 21101 ENSMUSG00000103158.5 ENSMUSG00000103158 ENSMUST00000194266 Gm31925 lincRNA Interval_76526 chr17 80769679 80771139 + 0 NA Intergenic Intergenic 42278 ENSMUSG00000054957.5 ENSMUSG00000054957 ENSMUST00000068277 Gm9959 pseudogene Interval_38452 chr12 79130183 79131870 + 0 NA intron (ENSMUSG00000021125.6, intron 1 of 7) protein_coding-intron (ENSMUSG00000021125.6, intron 1 of 7) 249 ENSMUSG00000021125.6 ENSMUSG00000021125 ENSMUST00000021550 Arg2 protein_coding Interval_98073 chr2 147501428 147501723 + 0 NA Intergenic Intergenic -98313 ENSMUSG00000083126.1 ENSMUSG00000083126 ENSMUST00000118814 Gm14109 processed_pseudogene Interval_154540 chr8 19201094 19202092 + 0 NA TTS (ENSMUSG00000059230.2) protein_coding-TTS (ENSMUSG00000059230.2) 2887 ENSMUSG00000059230.2 ENSMUSG00000059230 ENSMUST00000081017 Defb4 protein_coding Interval_84567 chr19 12774307 12774551 + 0 NA exon (ENSMUSG00000024695.16, exon 7 of 7) protein_coding-exon (ENSMUSG00000024695.16, exon 7 of 7) -8797 ENSMUSG00000079415.2 ENSMUSG00000079415 ENSMUST00000112933 Cntf protein_coding Interval_71121 chr17 18841386 18842370 + 0 NA TTS (ENSMUSG00000093531.3) unprocessed_pseudogene-TTS (ENSMUSG00000093531.3) 31043 ENSMUSG00000093531.3 ENSMUSG00000093531 ENSMUST00000176899 Vmn2r-ps117 unprocessed_pseudogene Interval_78270 chr18 11082023 11082738 + 0 NA intron (ENSMUSG00000005836.10, intron 6 of 6) protein_coding-intron (ENSMUSG00000005836.10, intron 6 of 6) 29336 ENSMUSG00000005836.10 ENSMUSG00000005836 ENSMUST00000234971 Gata6 protein_coding Interval_161584 chr8 121382408 121383211 + 0 NA intron (ENSMUSG00000092329.1, intron 1 of 15) protein_coding-intron (ENSMUSG00000092329.1, intron 1 of 15) -25973 ENSMUSG00000097384.1 ENSMUSG00000097384 ENSMUST00000181200 Gm26815 lincRNA Interval_117531 chr4 124441610 124442279 + 0 NA intron (ENSMUSG00000084757.7, intron 2 of 3) lincRNA-intron (ENSMUSG00000084757.7, intron 2 of 3) 9341 ENSMUSG00000084757.7 ENSMUSG00000084757 ENSMUST00000156566 1700057H15Rik lincRNA Interval_2735 chr1 44011929 44012590 + 0 NA exon (ENSMUSG00000047343.4, exon 3 of 3) protein_coding-exon (ENSMUSG00000047343.4, exon 3 of 3) 5209 ENSMUSG00000047343.4 ENSMUSG00000047343 ENSMUST00000159881 Mettl21c protein_coding Interval_121119 chr4 153228943 153229455 + 0 NA Intergenic Intergenic 11023 ENSMUSG00000087454.1 ENSMUSG00000087454 ENSMUST00000126141 Gm13174 lincRNA Interval_33958 chr11 119656250 119658132 + 0 NA intron (ENSMUSG00000025583.15, intron 1 of 20) protein_coding-intron (ENSMUSG00000025583.15, intron 1 of 33) -10561 ENSMUSG00000083870.1 ENSMUSG00000083870 ENSMUST00000121392 Gm11761 processed_pseudogene Interval_86537 chr19 41565518 41565792 + 0 NA intron (ENSMUSG00000025019.17, intron 7 of 7) protein_coding-intron (ENSMUSG00000025019.17, intron 7 of 7) -10212 ENSMUSG00000025019.17 ENSMUSG00000025019 ENSMUST00000172371 Lcor protein_coding Interval_111877 chr4 32195935 32197277 + 0 NA Intergenic Intergenic -10542 ENSMUSG00000083564.1 ENSMUSG00000083564 ENSMUST00000118175 Gm11929 processed_pseudogene Interval_127436 chr5 103916415 103917160 + 0 NA Intergenic Intergenic 17908 ENSMUSG00000095133.1 ENSMUSG00000095133 ENSMUST00000179033 Gm24897 snRNA Interval_53542 chr14 58655974 58657461 + 0 NA Intergenic Intergenic -6317 ENSMUSG00000077201.1 ENSMUSG00000077201 ENSMUST00000104013 Gm25614 snoRNA Interval_65166 chr16 20309834 20310262 + 0 NA intron (ENSMUSG00000022818.13, intron 4 of 4) protein_coding-intron (ENSMUSG00000022818.13, intron 7 of 7) 6702 ENSMUSG00000022818.13 ENSMUSG00000022818 ENSMUST00000182669 Cyp2ab1 protein_coding Interval_20412 chr10 117402227 117403019 + 0 NA Intergenic Intergenic 11281 ENSMUSG00000112796.1 ENSMUSG00000112796 ENSMUST00000220040 Gm40770 lincRNA Interval_37675 chr12 71030063 71031166 + 0 NA intron (ENSMUSG00000048118.17, intron 5 of 14) protein_coding-intron (ENSMUSG00000048118.17, intron 5 of 23) -15019 ENSMUSG00000085622.9 ENSMUSG00000085622 ENSMUST00000222159 3110056K07Rik processed_transcript Interval_1466 chr1 23828954 23829355 + 0 NA intron (ENSMUSG00000026156.8, intron 2 of 3) protein_coding-intron (ENSMUSG00000026156.8, intron 2 of 3) 67401 ENSMUSG00000026156.8 ENSMUSG00000026156 ENSMUST00000140583 B3gat2 protein_coding Interval_121413 chr4 155633556 155634334 + 0 NA promoter-TSS (ENSMUSG00000029062.14) protein_coding-promoter-TSS (ENSMUSG00000029062.14) -9465 ENSMUSG00000086682.1 ENSMUSG00000086682 ENSMUST00000154931 Gm16023 processed_transcript Interval_150527 chr7 112039677 112039880 + 0 NA intron (ENSMUSG00000059263.9, intron 1 of 28) protein_coding-intron (ENSMUSG00000059263.9, intron 1 of 27) 16272 ENSMUSG00000059263.9 ENSMUSG00000059263 ENSMUST00000210526 Usp47 protein_coding Interval_126472 chr5 88784625 88785665 + 0 NA Intergenic Intergenic -8751 ENSMUSG00000105640.1 ENSMUSG00000105640 ENSMUST00000197195 Gm42912 lincRNA Interval_103416 chr3 41422769 41425006 + 0 NA Intergenic Intergenic 17580 ENSMUSG00000089350.1 ENSMUSG00000089350 ENSMUST00000158725 Gm25487 snoRNA Interval_131203 chr5 135794018 135795175 + 0 NA Intergenic Intergenic 15911 ENSMUSG00000019179.10 ENSMUSG00000019179 ENSMUST00000143747 Mdh2 protein_coding Interval_7072 chr1 125412292 125412571 + 0 NA intron (ENSMUSG00000026341.16, intron 1 of 3) protein_coding-intron (ENSMUSG00000026341.16, intron 4 of 12) 23050 ENSMUSG00000026341.16 ENSMUSG00000026341 ENSMUST00000188827 Actr3 protein_coding Interval_164691 chr9 40627260 40629145 + 0 NA Intergenic Intergenic -11816 ENSMUSG00000111504.1 ENSMUSG00000111504 ENSMUST00000216936 Gm48284 lincRNA Interval_21359 chr10 128142344 128142661 + 0 NA intron (ENSMUSG00000040043.17, intron 6 of 14) protein_coding-intron (ENSMUSG00000040043.17, intron 5 of 12) 37795 ENSMUSG00000040043.17 ENSMUSG00000040043 ENSMUST00000218884 Rbms2 protein_coding Interval_149909 chr7 102493439 102494856 + 0 NA exon (ENSMUSG00000044824.8, exon 2 of 3) protein_coding-exon (ENSMUSG00000044824.8, exon 2 of 3) 5418 ENSMUSG00000044824.8 ENSMUSG00000044824 ENSMUST00000058750 Olfr545 protein_coding Interval_137859 chr6 82996567 82997357 + 0 NA intron (ENSMUSG00000030041.9, intron 4 of 9) protein_coding-intron (ENSMUSG00000030041.9, intron 4 of 9) 5317 ENSMUSG00000107599.1 ENSMUSG00000107599 ENSMUST00000203285 Gm43981 TEC Interval_108392 chr3 126575878 126576388 + 0 NA Intergenic Intergenic -21073 ENSMUSG00000053819.16 ENSMUSG00000053819 ENSMUST00000198637 Camk2d protein_coding Interval_9816 chr1 162619988 162621077 + 0 NA Intergenic Intergenic 8535 ENSMUSG00000091743.2 ENSMUSG00000091743 ENSMUST00000066241 Gm5705 processed_pseudogene Interval_159379 chr8 94178814 94179575 + 0 NA promoter-TSS (ENSMUSG00000031765.8) protein_coding-promoter-TSS (ENSMUSG00000031765.8) -17 ENSMUSG00000031765.8 ENSMUSG00000031765 ENSMUST00000211807 Mt1 protein_coding Interval_134317 chr6 25065758 25066485 + 0 NA Intergenic Intergenic 12782 ENSMUSG00000087867.1 ENSMUSG00000087867 ENSMUST00000157242 Gm24443 snoRNA Interval_20093 chr10 114310627 114310828 + 0 NA Intergenic Intergenic -39747 ENSMUSG00000104335.1 ENSMUSG00000104335 ENSMUST00000192301 Gm38281 TEC Interval_147370 chr7 66229812 66230019 + 0 NA intron (ENSMUSG00000015133.17, intron 2 of 2) protein_coding-intron (ENSMUSG00000015133.17, intron 2 of 2) 32555 ENSMUSG00000015133.17 ENSMUSG00000015133 ENSMUST00000154893 Lrrk1 protein_coding Interval_60035 chr15 64132149 64132365 + 0 NA intron (ENSMUSG00000022377.16, intron 16 of 30) protein_coding-intron (ENSMUSG00000022377.16, intron 16 of 30) -8451 ENSMUSG00000022377.16 ENSMUSG00000022377 ENSMUST00000175963 Asap1 protein_coding Interval_138187 chr6 86028236 86029554 + 0 NA exon (ENSMUSG00000030000.10, exon 1 of 13) protein_coding-exon (ENSMUSG00000030000.10, exon 1 of 13) -11039 ENSMUSG00000107927.1 ENSMUSG00000107927 ENSMUST00000204669 Gm44090 TEC Interval_22098 chr11 6331496 6331805 + 0 NA intron (ENSMUSG00000020456.17, intron 5 of 23) protein_coding-intron (ENSMUSG00000020456.17, intron 4 of 22) 39665 ENSMUSG00000020456.17 ENSMUSG00000020456 ENSMUST00000081894 Ogdh protein_coding Interval_83833 chr19 4967629 4968746 + 0 NA Intergenic Intergenic 5857 ENSMUSG00000024902.5 ENSMUSG00000024902 ENSMUST00000235229 Mrpl11 protein_coding Interval_152412 chr7 132852157 132853153 + 0 NA promoter-TSS (ENSMUSG00000030960.16) protein_coding-promoter-TSS (ENSMUSG00000030960.16) -16 ENSMUSG00000030960.16 ENSMUSG00000030960 ENSMUST00000154914 Eef1akmt2 protein_coding Interval_82611 chr18 75419429 75419896 + 0 NA Intergenic Intergenic 50672 ENSMUSG00000025880.11 ENSMUSG00000025880 ENSMUST00000172718 Smad7 protein_coding Interval_1848 chr1 34116275 34117025 + 0 NA promoter-TSS (ENSMUSG00000105982.1) miRNA-promoter-TSS (ENSMUSG00000105982.1) -709 ENSMUSG00000105982.1 ENSMUSG00000105982 ENSMUST00000198033 Mir6896 miRNA Interval_4538 chr1 74877072 74877731 + 0 NA intron (ENSMUSG00000089964.1, intron 3 of 3) processed_transcript-intron (ENSMUSG00000089964.1, intron 3 of 3) 7207 ENSMUSG00000055197.4 ENSMUSG00000055197 ENSMUST00000162938 Fev protein_coding Interval_98476 chr2 152686357 152687567 + 0 NA promoter-TSS (ENSMUSG00000042814.8) protein_coding-promoter-TSS (ENSMUSG00000042814.8) -73 ENSMUSG00000042814.8 ENSMUSG00000042814 ENSMUST00000062148 Mcts2 protein_coding Interval_79631 chr18 34102378 34103782 + 0 NA Intergenic Intergenic 9635 ENSMUSG00000077263.1 ENSMUSG00000077263 ENSMUST00000104075 Gm24432 snoRNA Interval_174385 chrX 151009243 151009637 + 0 NA intron (ENSMUSG00000025266.11, intron 2 of 4) protein_coding-intron (ENSMUSG00000025266.11, intron 2 of 15) 3570 ENSMUSG00000081782.1 ENSMUSG00000081782 ENSMUST00000121540 Gm15152 processed_pseudogene Interval_65647 chr16 24736481 24736659 + 0 NA intron (ENSMUSG00000033306.15, intron 2 of 7) protein_coding-intron (ENSMUSG00000033306.15, intron 7 of 12) -91285 ENSMUSG00000065494.1 ENSMUSG00000065494 ENSMUST00000083560 Mir28a miRNA Interval_126555 chr5 90216024 90216347 + 0 NA promoter-TSS (ENSMUSG00000035505.14) protein_coding-promoter-TSS (ENSMUSG00000035505.14) -163 ENSMUSG00000035505.14 ENSMUSG00000035505 ENSMUST00000148480 Cox18 protein_coding Interval_108410 chr3 126771117 126771988 + 0 NA exon (ENSMUSG00000053819.16, exon 6 of 19) protein_coding-exon (ENSMUSG00000053819.16, exon 6 of 19) 25419 ENSMUSG00000105553.1 ENSMUSG00000105553 ENSMUST00000196636 Gm42514 TEC Interval_4338 chr1 72811154 72811531 + 0 NA Intergenic Intergenic -37357 ENSMUSG00000039323.18 ENSMUSG00000039323 ENSMUST00000155703 Igfbp2 protein_coding Interval_26324 chr11 56159560 56159827 + 0 NA Intergenic Intergenic 103390 ENSMUSG00000084169.1 ENSMUSG00000084169 ENSMUST00000120178 Gm12240 processed_pseudogene Interval_154246 chr8 13757229 13758605 + 0 NA promoter-TSS (ENSMUSG00000038416.15) protein_coding-promoter-TSS (ENSMUSG00000038416.15) -10439 ENSMUSG00000109617.1 ENSMUSG00000109617 ENSMUST00000210184 Gm7669 processed_pseudogene Interval_79124 chr18 24765372 24765797 + 0 NA intron (ENSMUSG00000034295.10, intron 2 of 24) protein_coding-intron (ENSMUSG00000034295.10, intron 2 of 26) 4421 ENSMUSG00000088920.1 ENSMUSG00000088920 ENSMUST00000158295 Gm24294 misc_RNA Interval_23086 chr11 19847745 19851623 + 0 NA Intergenic Intergenic 66032 ENSMUSG00000081820.1 ENSMUSG00000081820 ENSMUST00000120073 Gm12029 processed_pseudogene Interval_73898 chr17 45377191 45377638 + 0 NA Intergenic Intergenic 56127 ENSMUSG00000023932.9 ENSMUSG00000023932 ENSMUST00000232910 Cdc5l protein_coding Interval_144582 chr7 26406471 26406897 + 0 NA Intergenic Intergenic -2984 ENSMUSG00000040614.14 ENSMUSG00000040614 ENSMUST00000160277 Nlrp9c protein_coding Interval_156331 chr8 47481727 47482181 + 0 NA Intergenic Intergenic 41536 ENSMUSG00000092710.1 ENSMUSG00000092710 ENSMUST00000174969 Gm22857 snoRNA Interval_79314 chr18 30374667 30375980 + 0 NA Intergenic Intergenic 44737 ENSMUSG00000117345.1 ENSMUSG00000117345 ENSMUST00000234753 Gm7926 processed_pseudogene Interval_58696 chr15 37178215 37178411 + 0 NA Intergenic Intergenic 4388 ENSMUSG00000115621.1 ENSMUSG00000115621 ENSMUST00000226193 Gm8664 processed_pseudogene Interval_47598 chr13 89748813 89749081 + 0 NA intron (ENSMUSG00000089940.1, intron 1 of 1) antisense-intron (ENSMUSG00000089940.1, intron 1 of 1) -8550 ENSMUSG00000021614.16 ENSMUSG00000021614 ENSMUST00000162715 Vcan protein_coding Interval_122734 chr5 24968611 24969358 + 0 NA intron (ENSMUSG00000028944.14, intron 3 of 15) protein_coding-intron (ENSMUSG00000028944.14, intron 3 of 15) -16858 ENSMUSG00000059631.6 ENSMUSG00000059631 ENSMUST00000075081 1500035N22Rik lincRNA Interval_154718 chr8 22822853 22824437 + 0 NA Intergenic Intergenic -1100 ENSMUSG00000089484.1 ENSMUSG00000089484 ENSMUST00000158859 Gm24735 snRNA Interval_122776 chr5 25346872 25347176 + 0 NA intron (ENSMUSG00000038056.15, intron 24 of 33) protein_coding-intron (ENSMUSG00000038056.15, intron 25 of 58) -21996 ENSMUSG00000106457.1 ENSMUSG00000106457 ENSMUST00000198731 Gm42585 TEC Interval_15223 chr10 43466047 43468095 + 0 NA Intergenic Intergenic -10570 ENSMUSG00000094955.2 ENSMUSG00000094955 ENSMUST00000178135 Gm3699 processed_pseudogene Interval_153950 chr8 11456422 11456610 + 0 NA TTS (ENSMUSG00000110245.1) TEC-TTS (ENSMUSG00000110245.1) 3226 ENSMUSG00000110245.1 ENSMUSG00000110245 ENSMUST00000209418 Gm20100 TEC Interval_130694 chr5 129846485 129847615 + 0 NA promoter-TSS (ENSMUSG00000025538.15) protein_coding-promoter-TSS (ENSMUSG00000025538.15) 39 ENSMUSG00000025538.15 ENSMUSG00000025538 ENSMUST00000122826 Sumf2 protein_coding Interval_131895 chr5 140654500 140654835 + 0 NA Intergenic Intergenic -5670 ENSMUSG00000036565.7 ENSMUSG00000036565 ENSMUST00000200302 Ttyh3 protein_coding Interval_112007 chr4 33201389 33202562 + 0 NA TTS (ENSMUSG00000083887.1) processed_pseudogene-TTS (ENSMUSG00000083887.1) 211 ENSMUSG00000083887.1 ENSMUSG00000083887 ENSMUST00000117788 Gm11930 processed_pseudogene Interval_89386 chr2 20284371 20285117 + 0 NA intron (ENSMUSG00000036617.17, intron 2 of 7) protein_coding-intron (ENSMUSG00000036617.17, intron 2 of 7) 4225 ENSMUSG00000065253.1 ENSMUSG00000065253 ENSMUST00000083319 Gm23970 snRNA Interval_154795 chr8 23417727 23418207 + 0 NA intron (ENSMUSG00000031548.7, intron 2 of 2) protein_coding-intron (ENSMUSG00000031548.7, intron 2 of 2) 6465 ENSMUSG00000031548.7 ENSMUSG00000031548 ENSMUST00000033952 Sfrp1 protein_coding Interval_3246 chr1 55154785 55155922 + 0 NA TTS (ENSMUSG00000025979.13) protein_coding-TTS (ENSMUSG00000025979.13) 5700 ENSMUSG00000061863.6 ENSMUSG00000061863 ENSMUST00000161440 Gm6822 processed_pseudogene Interval_78491 chr18 13654614 13655504 + 0 NA Intergenic Intergenic -53659 ENSMUSG00000117608.1 ENSMUSG00000117608 ENSMUST00000234112 AC103362.1 lincRNA Interval_53606 chr14 59853590 59853964 + 0 NA intron (ENSMUSG00000021983.16, intron 26 of 35) protein_coding-intron (ENSMUSG00000021983.16, intron 26 of 35) 186714 ENSMUSG00000087286.1 ENSMUSG00000087286 ENSMUST00000132939 Gm9013 processed_pseudogene Interval_59180 chr15 46815593 46815782 + 0 NA Intergenic Intergenic -123383 ENSMUSG00000115495.1 ENSMUSG00000115495 ENSMUST00000228621 Gm38541 processed_pseudogene Interval_61997 chr15 85783310 85783567 + 0 NA intron (ENSMUSG00000022383.13, intron 3 of 7) protein_coding-intron (ENSMUSG00000022383.13, intron 3 of 7) 28221 ENSMUSG00000064284.12 ENSMUSG00000064284 ENSMUST00000154814 Cdpf1 protein_coding Interval_91187 chr2 35737206 35737592 + 0 NA Intergenic Intergenic 27072 ENSMUSG00000026883.17 ENSMUSG00000026883 ENSMUST00000156669 Dab2ip protein_coding Interval_67658 chr16 55768130 55768336 + 0 NA Intergenic Intergenic 10911 ENSMUSG00000088450.1 ENSMUSG00000088450 ENSMUST00000157825 Gm26369 snRNA Interval_84775 chr19 16529186 16529534 + 0 NA intron (ENSMUSG00000024697.4, intron 1 of 6) protein_coding-intron (ENSMUSG00000024697.4, intron 1 of 6) -38296 ENSMUSG00000117699.1 ENSMUSG00000117699 ENSMUST00000236751 Gm8222 processed_pseudogene Interval_74307 chr17 48730354 48730592 + 0 NA TTS (ENSMUSG00000110276.1) lincRNA-TTS (ENSMUSG00000110276.1) 8273 ENSMUSG00000110276.1 ENSMUSG00000110276 ENSMUST00000209681 Gm45330 lincRNA Interval_139999 chr6 113318744 113319131 + 0 NA TTS (ENSMUSG00000001632.16) protein_coding-TTS (ENSMUSG00000001632.16) 7810 ENSMUSG00000085012.1 ENSMUSG00000085012 ENSMUST00000156734 Gm15492 antisense Interval_80401 chr18 41864532 41864776 + 0 NA intron (ENSMUSG00000117745.1, intron 1 of 3) lincRNA-intron (ENSMUSG00000117745.1, intron 1 of 3) 10180 ENSMUSG00000117745.1 ENSMUSG00000117745 ENSMUST00000235677 Gm50410 lincRNA Interval_154029 chr8 12047697 12047987 + 0 NA Intergenic Intergenic 99503 ENSMUSG00000109995.1 ENSMUSG00000109995 ENSMUST00000209977 B020031H02Rik lincRNA Interval_1256 chr1 18360140 18360428 + 0 NA Intergenic Intergenic -95204 ENSMUSG00000067773.6 ENSMUSG00000067773 ENSMUST00000097817 Defb41 protein_coding Interval_79123 chr18 24723811 24724556 + 0 NA intron (ENSMUSG00000034295.10, intron 1 of 24) protein_coding-intron (ENSMUSG00000034295.10, intron 1 of 26) 14738 ENSMUSG00000034295.10 ENSMUSG00000034295 ENSMUST00000234199 Fhod3 protein_coding Interval_106073 chr3 92532199 92532541 + 0 NA TTS (ENSMUSG00000102308.1) protein_coding-TTS (ENSMUSG00000102308.1) 2141 ENSMUSG00000102308.1 ENSMUSG00000102308 ENSMUST00000193521 2310046K23Rik protein_coding Interval_118356 chr4 130857622 130858400 + 0 NA promoter-TSS (ENSMUSG00000077381.1) snoRNA-promoter-TSS (ENSMUSG00000077381.1) -131 ENSMUSG00000077381.1 ENSMUSG00000077381 ENSMUST00000104193 Gm22660 snoRNA Interval_145980 chr7 42831949 42833117 + 0 NA intron (ENSMUSG00000092225.1, intron 1 of 3) protein_coding-intron (ENSMUSG00000092225.1, intron 1 of 3) 34701 ENSMUSG00000092225.1 ENSMUSG00000092225 ENSMUST00000174558 Gm2381 protein_coding Interval_105283 chr3 84566546 84566819 + 0 NA intron (ENSMUSG00000074513.9, intron 1 of 8) protein_coding-intron (ENSMUSG00000074513.9, intron 1 of 7) -8895 ENSMUSG00000103741.1 ENSMUSG00000103741 ENSMUST00000192641 Gm38241 processed_pseudogene Interval_18567 chr10 87855945 87856698 + 0 NA intron (ENSMUSG00000058934.8, intron 1 of 1) antisense-intron (ENSMUSG00000058934.8, intron 1 of 1) -3290 ENSMUSG00000020053.18 ENSMUSG00000020053 ENSMUST00000122100 Igf1 protein_coding Interval_35441 chr12 21777698 21779306 + 0 NA Intergenic Intergenic -1795 ENSMUSG00000091105.1 ENSMUSG00000091105 ENSMUST00000164169 Mrto4-ps2 processed_pseudogene Interval_50354 chr14 12012148 12012498 + 0 NA intron (ENSMUSG00000021745.14, intron 4 of 29) protein_coding-intron (ENSMUSG00000021745.14, intron 4 of 29) -31115 ENSMUSG00000085883.2 ENSMUSG00000085883 ENSMUST00000151564 Gm3848 antisense Interval_152890 chr7 139510644 139511359 + 0 NA intron (ENSMUSG00000025477.14, intron 3 of 3) protein_coding-intron (ENSMUSG00000025477.14, intron 4 of 15) -5658 ENSMUSG00000025477.14 ENSMUSG00000025477 ENSMUST00000152475 Inpp5a protein_coding Interval_40616 chr12 106046039 106046949 + 0 NA intron (ENSMUSG00000021115.15, intron 3 of 13) protein_coding-intron (ENSMUSG00000021115.15, intron 3 of 14) 20687 ENSMUSG00000021115.15 ENSMUSG00000021115 ENSMUST00000220629 Vrk1 protein_coding Interval_46389 chr13 64432047 64433157 + 0 NA promoter-TSS (ENSMUSG00000021483.8) protein_coding-promoter-TSS (ENSMUSG00000021483.8) -200 ENSMUSG00000113696.1 ENSMUSG00000113696 ENSMUST00000221465 1700015C15Rik antisense Interval_78050 chr18 7515008 7515832 + 0 NA intron (ENSMUSG00000057440.8, intron 2 of 2) protein_coding-intron (ENSMUSG00000057440.8, intron 2 of 16) -33567 ENSMUSG00000117556.1 ENSMUSG00000117556 ENSMUST00000234527 Gm18948 processed_pseudogene Interval_142842 chr6 146386967 146387452 + 0 NA intron (ENSMUSG00000030287.15, intron 12 of 13) protein_coding-intron (ENSMUSG00000030287.15, intron 13 of 56) 10792 ENSMUSG00000107743.1 ENSMUSG00000107743 ENSMUST00000204247 Gm44087 TEC Interval_162157 chr8 125558465 125558730 + 0 NA intron (ENSMUSG00000001995.9, intron 1 of 22) protein_coding-intron (ENSMUSG00000001995.9, intron 1 of 21) 11211 ENSMUSG00000001995.9 ENSMUSG00000001995 ENSMUST00000212604 Sipa1l2 protein_coding Interval_58330 chr15 32437375 32438718 + 0 NA intron (ENSMUSG00000022231.10, intron 3 of 7) protein_coding-intron (ENSMUSG00000022231.10, intron 3 of 22) 185459 ENSMUSG00000115063.1 ENSMUSG00000115063 ENSMUST00000227807 4930465K09Rik antisense Interval_156218 chr8 46197090 46197295 + 0 NA Intergenic Intergenic 13838 ENSMUSG00000031633.4 ENSMUSG00000031633 ENSMUST00000155986 Slc25a4 protein_coding Interval_102259 chr3 20067285 20067795 + 0 NA intron (ENSMUSG00000002428.12, intron 6 of 23) protein_coding-intron (ENSMUSG00000002428.12, intron 6 of 24) -32246 ENSMUSG00000027615.14 ENSMUSG00000027615 ENSMUST00000133094 Hps3 protein_coding Interval_66094 chr16 31562379 31563106 + 0 NA Intergenic Intergenic 30478 ENSMUSG00000116793.1 ENSMUSG00000116793 ENSMUST00000232216 Gm34256 lincRNA Interval_64825 chr16 16212885 16214175 + 0 NA exon (ENSMUSG00000041957.15, exon 1 of 13) protein_coding-exon (ENSMUSG00000041957.15, exon 1 of 13) 212 ENSMUSG00000041957.15 ENSMUSG00000041957 ENSMUST00000039408 Pkp2 protein_coding Interval_121634 chr5 4088366 4088726 + 0 NA intron (ENSMUSG00000001467.5, intron 7 of 9) protein_coding-intron (ENSMUSG00000001467.5, intron 7 of 9) 14975 ENSMUSG00000106535.1 ENSMUSG00000106535 ENSMUST00000198500 Gm43031 sense_intronic Interval_85700 chr19 29761884 29762092 + 0 NA intron (ENSMUSG00000046138.15, intron 1 of 6) protein_coding-intron (ENSMUSG00000046138.15, intron 2 of 7) 44001 ENSMUSG00000046138.15 ENSMUSG00000046138 ENSMUST00000176773 9930021J03Rik protein_coding Interval_11443 chr1 181952846 181954381 + 0 NA promoter-TSS (ENSMUSG00000103722.1) TEC-promoter-TSS (ENSMUSG00000103722.1) -238 ENSMUSG00000103722.1 ENSMUSG00000103722 ENSMUST00000194331 2700078F05Rik TEC Interval_161540 chr8 121082647 121085232 + 0 NA promoter-TSS (ENSMUSG00000042812.5) protein_coding-promoter-TSS (ENSMUSG00000042812.5) -447 ENSMUSG00000042812.5 ENSMUSG00000042812 ENSMUST00000181504 Foxf1 protein_coding Interval_42080 chr13 8166743 8167066 + 0 NA Intergenic Intergenic 33590 ENSMUSG00000114126.1 ENSMUSG00000114126 ENSMUST00000221418 Gm48257 lincRNA Interval_48919 chr13 104836870 104837103 + 0 NA intron (ENSMUSG00000021716.14, intron 4 of 4) protein_coding-intron (ENSMUSG00000021716.14, intron 4 of 4) 19747 ENSMUSG00000021716.14 ENSMUSG00000021716 ENSMUST00000147061 Srek1ip1 protein_coding Interval_155332 chr8 31453390 31453727 + 0 NA Intergenic Intergenic -38418 ENSMUSG00000109605.1 ENSMUSG00000109605 ENSMUST00000211239 Gm45303 lincRNA Interval_19802 chr10 109394441 109394803 + 0 NA Intergenic Intergenic -8135 ENSMUSG00000112253.1 ENSMUSG00000112253 ENSMUST00000219849 Gm47329 processed_pseudogene Interval_136851 chr6 61372697 61372939 + 0 NA intron (ENSMUSG00000039578.17, intron 1 of 3) protein_coding-intron (ENSMUSG00000039578.17, intron 2 of 9) -27789 ENSMUSG00000107757.1 ENSMUSG00000107757 ENSMUST00000204456 Gm43898 processed_pseudogene Interval_72751 chr17 31917747 31918379 + 0 NA Intergenic Intergenic 5397 ENSMUSG00000117980.1 ENSMUSG00000117980 ENSMUST00000237005 Gm30571 TEC Interval_127373 chr5 103537244 103537617 + 0 NA intron (ENSMUSG00000034573.14, intron 3 of 4) protein_coding-intron (ENSMUSG00000034573.14, intron 17 of 47) -4409 ENSMUSG00000104580.1 ENSMUSG00000104580 ENSMUST00000197715 Gm42620 antisense Interval_37098 chr12 57960116 57960748 + 0 NA intron (ENSMUSG00000112704.1, intron 2 of 5) lincRNA-intron (ENSMUSG00000112704.1, intron 2 of 5) 9221 ENSMUSG00000112704.1 ENSMUSG00000112704 ENSMUST00000218373 Gm46329 lincRNA Interval_157427 chr8 70291259 70291985 + 0 NA TTS (ENSMUSG00000003573.15) protein_coding-TTS (ENSMUSG00000003573.15) 8588 ENSMUSG00000003573.15 ENSMUSG00000003573 ENSMUST00000135368 Homer3 protein_coding Interval_47517 chr13 86111492 86111888 + 0 NA Intergenic Intergenic -65343 ENSMUSG00000017778.14 ENSMUSG00000017778 ENSMUST00000017922 Cox7c protein_coding Interval_135244 chr6 37802962 37803697 + 0 NA Intergenic Intergenic -2757 ENSMUSG00000080242.5 ENSMUSG00000080242 ENSMUST00000122373 Atp6v0c-ps2 processed_pseudogene Interval_111306 chr4 18270787 18272137 + 0 NA Intergenic Intergenic 77931 ENSMUSG00000083150.1 ENSMUSG00000083150 ENSMUST00000120806 Gm11852 processed_pseudogene Interval_121771 chr5 7745498 7745886 + 0 NA intron (ENSMUSG00000105068.1, intron 3 of 5) lincRNA-intron (ENSMUSG00000105068.1, intron 3 of 5) -111416 ENSMUSG00000081226.1 ENSMUSG00000081226 ENSMUST00000118633 Gm8802 processed_pseudogene Interval_46584 chr13 67381572 67382030 + 0 NA Intergenic Intergenic -6068 ENSMUSG00000098692.1 ENSMUSG00000098692 ENSMUST00000166080 Gm28041 protein_coding Interval_31557 chr11 101352914 101353342 + 0 NA TTS (ENSMUSG00000076227.1) miRNA-TTS (ENSMUSG00000076227.1) 309 ENSMUSG00000076227.1 ENSMUSG00000076227 ENSMUST00000102272 Gm25593 miRNA Interval_156994 chr8 63970520 63971153 + 0 NA Intergenic Intergenic -18588 ENSMUSG00000094443.2 ENSMUSG00000094443 ENSMUST00000210915 Sgo2b protein_coding Interval_130793 chr5 130554055 130554327 + 0 NA intron (ENSMUSG00000060371.12, intron 2 of 2) protein_coding-intron (ENSMUSG00000060371.12, intron 3 of 6) 64360 ENSMUSG00000106849.1 ENSMUSG00000106849 ENSMUST00000201334 Gm43418 TEC Interval_100163 chr2 167423052 167425388 + 0 NA exon (ENSMUSG00000039463.14, exon 2 of 17) protein_coding-exon (ENSMUSG00000039463.14, exon 2 of 17) -26835 ENSMUSG00000039463.14 ENSMUSG00000039463 ENSMUST00000148454 Slc9a8 protein_coding Interval_5006 chr1 84152526 84153127 + 0 NA intron (ENSMUSG00000045658.16, intron 4 of 4) protein_coding-intron (ENSMUSG00000045658.16, intron 2 of 2) -15362 ENSMUSG00000101934.1 ENSMUSG00000101934 ENSMUST00000189162 Gm18304 processed_pseudogene Interval_117109 chr4 119592338 119592900 + 0 NA intron (ENSMUSG00000032998.16, intron 4 of 4) protein_coding-intron (ENSMUSG00000032998.16, intron 4 of 12) -38561 ENSMUSG00000081678.1 ENSMUSG00000081678 ENSMUST00000119396 Gm12959 processed_pseudogene Interval_165961 chr9 54991798 54992070 + 0 NA intron (ENSMUSG00000035594.10, intron 1 of 2) protein_coding-intron (ENSMUSG00000035594.10, intron 1 of 5) 10468 ENSMUSG00000035594.10 ENSMUSG00000035594 ENSMUST00000213960 Chrna5 protein_coding Interval_99945 chr2 166037202 166037631 + 0 NA intron (ENSMUSG00000027678.17, intron 2 of 22) protein_coding-intron (ENSMUSG00000027678.17, intron 2 of 22) -10502 ENSMUSG00000027678.17 ENSMUSG00000027678 ENSMUST00000139394 Ncoa3 protein_coding Interval_125103 chr5 64494403 64494774 + 0 NA Intergenic Intergenic 17580 ENSMUSG00000105352.4 ENSMUSG00000105352 ENSMUST00000196829 C030018K13Rik lincRNA Interval_128895 chr5 115932951 115933146 + 0 NA promoter-TSS (ENSMUSG00000029516.19) protein_coding-promoter-TSS (ENSMUSG00000029516.19) 30618 ENSMUSG00000107263.1 ENSMUSG00000107263 ENSMUST00000201457 Gm42471 TEC Interval_4688 chr1 77248206 77248782 + 0 NA Intergenic Intergenic -101502 ENSMUSG00000102904.1 ENSMUSG00000102904 ENSMUST00000193479 Gm38265 TEC Interval_149162 chr7 95566091 95566296 + 0 NA Intergenic Intergenic 91247 ENSMUSG00000108429.1 ENSMUSG00000108429 ENSMUST00000206820 Gm44603 processed_pseudogene Interval_132368 chr5 144514748 144515570 + 0 NA Intergenic Intergenic -30743 ENSMUSG00000059991.7 ENSMUSG00000059991 ENSMUST00000071782 Nptx2 protein_coding Interval_740 chr1 10345270 10345570 + 0 NA intron (ENSMUSG00000042501.12, intron 7 of 9) protein_coding-intron (ENSMUSG00000042501.12, intron 8 of 10) 106569 ENSMUSG00000103810.1 ENSMUSG00000103810 ENSMUST00000194845 Gm38005 TEC Interval_65008 chr16 17828815 17829229 + 0 NA Intergenic Intergenic -4546 ENSMUSG00000116652.2 ENSMUSG00000116652 ENSMUST00000235474 B830017H08Rik protein_coding Interval_93066 chr2 69903345 69904721 + 0 NA intron (ENSMUSG00000044308.17, intron 1 of 7) protein_coding-intron (ENSMUSG00000044308.17, intron 1 of 38) 18305 ENSMUSG00000085735.1 ENSMUSG00000085735 ENSMUST00000129114 Mettl5os antisense Interval_89054 chr2 15069682 15070665 + 0 NA exon (ENSMUSG00000017418.14, exon 1 of 1) protein_coding-exon (ENSMUSG00000017418.14, exon 1 of 1) 13460 ENSMUSG00000102258.1 ENSMUSG00000102258 ENSMUST00000195881 Gm38257 TEC Interval_77399 chr17 88459876 88460534 + 0 NA intron (ENSMUSG00000034998.18, intron 2 of 2) protein_coding-intron (ENSMUSG00000034998.18, intron 1 of 5) 19470 ENSMUSG00000034998.18 ENSMUSG00000034998 ENSMUST00000141052 Foxn2 protein_coding Interval_141703 chr6 133875638 133876523 + 0 NA Intergenic Intergenic 12026 ENSMUSG00000107890.1 ENSMUSG00000107890 ENSMUST00000203388 Gm43968 processed_pseudogene Interval_149987 chr7 104231049 104231628 + 0 NA intron (ENSMUSG00000072244.11, intron 5 of 7) protein_coding-intron (ENSMUSG00000072244.11, intron 5 of 7) 5831 ENSMUSG00000072244.11 ENSMUSG00000072244 ENSMUST00000214578 Trim6 protein_coding Interval_94219 chr2 85266300 85267148 + 0 NA Intergenic Intergenic 1509 ENSMUSG00000081014.1 ENSMUSG00000081014 ENSMUST00000117313 Gm13714 processed_pseudogene Interval_105996 chr3 90508793 90509998 + 0 NA promoter-TSS (ENSMUSG00000001017.15) protein_coding-promoter-TSS (ENSMUSG00000001017.15) 81 ENSMUSG00000001017.15 ENSMUSG00000001017 ENSMUST00000131868 Chtop protein_coding Interval_62819 chr15 97198330 97198566 + 0 NA Intergenic Intergenic -31204 ENSMUSG00000116295.1 ENSMUSG00000116295 ENSMUST00000229491 Gm32885 lincRNA Interval_15610 chr10 52295849 52296368 + 0 NA intron (ENSMUSG00000019891.15, intron 4 of 9) protein_coding-intron (ENSMUSG00000019891.15, intron 5 of 10) 47549 ENSMUSG00000112550.1 ENSMUSG00000112550 ENSMUST00000218299 Gm6627 processed_pseudogene Interval_37305 chr12 65026664 65027214 + 0 NA Intergenic Intergenic -16351 ENSMUSG00000035597.19 ENSMUSG00000035597 ENSMUST00000220729 Prpf39 protein_coding Interval_80430 chr18 42145287 42145571 + 0 NA intron (ENSMUSG00000057719.11, intron 1 of 3) protein_coding-intron (ENSMUSG00000057719.11, intron 6 of 8) 2396 ENSMUSG00000057719.11 ENSMUSG00000057719 ENSMUST00000236947 Sh3rf2 protein_coding Interval_58114 chr15 28041304 28042196 + 0 NA TTS (ENSMUSG00000115058.1) processed_pseudogene-TTS (ENSMUSG00000115058.1) 741 ENSMUSG00000115058.1 ENSMUSG00000115058 ENSMUST00000227963 Gm19883 processed_pseudogene Interval_127079 chr5 100129851 100130363 + 0 NA intron (ENSMUSG00000050640.16, intron 1 of 5) protein_coding-intron (ENSMUSG00000050640.16, intron 1 of 7) 29463 ENSMUSG00000050640.16 ENSMUSG00000050640 ENSMUST00000139520 Tmem150c protein_coding Interval_136298 chr6 52724892 52725184 + 0 NA intron (ENSMUSG00000004535.12, intron 2 of 4) protein_coding-intron (ENSMUSG00000004535.12, intron 2 of 17) -2108 ENSMUSG00000108036.1 ENSMUSG00000108036 ENSMUST00000203787 Gm43967 processed_pseudogene Interval_103522 chr3 46641303 46641695 + 0 NA Intergenic Intergenic 20378 ENSMUSG00000102589.1 ENSMUSG00000102589 ENSMUST00000195318 Gm37445 processed_pseudogene Interval_142212 chr6 138794373 138794879 + 0 NA Intergenic Intergenic 65498 ENSMUSG00000107686.1 ENSMUSG00000107686 ENSMUST00000203400 Gm9038 processed_pseudogene Interval_127627 chr5 105918348 105918825 + 0 NA Intergenic Intergenic 39003 ENSMUSG00000105341.1 ENSMUSG00000105341 ENSMUST00000196459 Gm43817 TEC Interval_35452 chr12 21938157 21938473 + 0 NA Intergenic Intergenic -102598 ENSMUSG00000094691.1 ENSMUSG00000094691 ENSMUST00000177620 Gm22908 miRNA Interval_50613 chr14 16574866 16576091 + 0 NA promoter-TSS (ENSMUSG00000017491.9) protein_coding-promoter-TSS (ENSMUSG00000017491.9) -123 ENSMUSG00000114463.1 ENSMUSG00000114463 ENSMUST00000224418 Gm48162 antisense Interval_91269 chr2 37206930 37207472 + 0 NA exon (ENSMUSG00000083815.1, exon 1 of 1) processed_pseudogene-exon (ENSMUSG00000083815.1, exon 1 of 1) 150 ENSMUSG00000083815.1 ENSMUSG00000083815 ENSMUST00000120111 Gm13435 processed_pseudogene Interval_162462 chr8 129097669 129098329 + 0 NA intron (ENSMUSG00000056018.14, intron 2 of 10) protein_coding-intron (ENSMUSG00000056018.14, intron 2 of 14) 15427 ENSMUSG00000077771.1 ENSMUSG00000077771 ENSMUST00000104583 Gm22374 snoRNA Interval_38505 chr12 79703747 79703936 + 0 NA intron (ENSMUSG00000059060.15, intron 8 of 10) protein_coding-intron (ENSMUSG00000059060.15, intron 8 of 10) 221653 ENSMUSG00000112765.1 ENSMUSG00000112765 ENSMUST00000219857 9430078K24Rik lincRNA Interval_4402 chr1 73932640 73933899 + 0 NA intron (ENSMUSG00000055322.16, intron 22 of 32) protein_coding-intron (ENSMUSG00000055322.16, intron 24 of 34) -77694 ENSMUSG00000098504.1 ENSMUSG00000098504 ENSMUST00000183826 Mir6351 miRNA Interval_157669 chr8 72191880 72192602 + 0 NA intron (ENSMUSG00000062007.13, intron 1 of 5) protein_coding-intron (ENSMUSG00000062007.13, intron 1 of 5) -1202 ENSMUSG00000062007.13 ENSMUSG00000062007 ENSMUST00000165324 Hsh2d protein_coding Interval_6650 chr1 118535883 118536156 + 0 NA exon (ENSMUSG00000064302.13, exon 1 of 1) protein_coding-exon (ENSMUSG00000064302.13, exon 1 of 1) 23302 ENSMUSG00000064302.13 ENSMUSG00000064302 ENSMUST00000187575 Clasp1 protein_coding Interval_114528 chr4 82293105 82294638 + 0 NA exon (ENSMUSG00000008575.17, exon 12 of 12) protein_coding-exon (ENSMUSG00000008575.17, exon 12 of 12) -145539 ENSMUSG00000084595.1 ENSMUSG00000084595 ENSMUST00000122646 n-R5s188 rRNA Interval_39136 chr12 85365617 85366192 + 0 NA intron (ENSMUSG00000021248.9, intron 1 of 4) protein_coding-intron (ENSMUSG00000021248.9, intron 1 of 4) -2259 ENSMUSG00000113752.1 ENSMUSG00000113752 ENSMUST00000222887 Gm47817 TEC Interval_123410 chr5 32336269 32336818 + 0 NA intron (ENSMUSG00000029134.14, intron 44 of 58) protein_coding-intron (ENSMUSG00000029134.14, intron 43 of 57) 18340 ENSMUSG00000107078.1 ENSMUSG00000107078 ENSMUST00000202688 Gm36840 antisense Interval_19941 chr10 111407655 111410238 + 0 NA Intergenic Intergenic -64281 ENSMUSG00000058799.16 ENSMUSG00000058799 ENSMUST00000219718 Nap1l1 protein_coding Interval_149680 chr7 100600650 100601229 + 0 NA intron (ENSMUSG00000030706.17, intron 1 of 1) protein_coding-intron (ENSMUSG00000030706.17, intron 1 of 1) -17864 ENSMUSG00000030706.17 ENSMUSG00000030706 ENSMUST00000127253 Mrpl48 protein_coding Interval_123249 chr5 30896149 30896490 + 0 NA promoter-TSS (ENSMUSG00000107201.1) TEC-promoter-TSS (ENSMUSG00000107201.1) -981 ENSMUSG00000107201.1 ENSMUSG00000107201 ENSMUST00000202893 5930420M18Rik TEC Interval_91107 chr2 35138643 35139019 + 0 NA intron (ENSMUSG00000057110.15, intron 14 of 42) protein_coding-intron (ENSMUSG00000057110.15, intron 14 of 43) -6265 ENSMUSG00000057110.15 ENSMUSG00000057110 ENSMUST00000143807 Cntrl protein_coding Interval_136293 chr6 52639728 52640681 + 0 NA promoter-TSS (ENSMUSG00000064792.1) snoRNA-promoter-TSS (ENSMUSG00000064792.1) 111 ENSMUSG00000029776.11 ENSMUSG00000029776 ENSMUST00000205086 Hibadh protein_coding Interval_39659 chr12 91839098 91839419 + 0 NA intron (ENSMUSG00000020964.14, intron 3 of 3) protein_coding-intron (ENSMUSG00000020964.14, intron 3 of 20) 9899 ENSMUSG00000020964.14 ENSMUSG00000020964 ENSMUST00000169843 Sel1l protein_coding Interval_17495 chr10 77228252 77228795 + 0 NA Intergenic Intergenic 30700 ENSMUSG00000078444.3 ENSMUSG00000078444 ENSMUST00000105408 Gm10941 bidirectional_promoter_lncRNA Interval_174325 chrX 144380852 144381113 + 0 NA TTS (ENSMUSG00000041710.4) protein_coding-TTS (ENSMUSG00000041710.4) -59727 ENSMUSG00000080922.1 ENSMUSG00000080922 ENSMUST00000121333 Gm2214 processed_pseudogene Interval_100748 chr2 172305361 172306331 + 0 NA Intergenic Intergenic 17713 ENSMUSG00000085949.1 ENSMUSG00000085949 ENSMUST00000152112 Gm14275 lincRNA Interval_145120 chr7 30162497 30163705 + 0 NA exon (ENSMUSG00000037029.8, exon 2 of 2) protein_coding-exon (ENSMUSG00000037029.8, exon 2 of 2) 6649 ENSMUSG00000037029.8 ENSMUSG00000037029 ENSMUST00000208923 Zfp146 protein_coding Interval_96899 chr2 129282210 129282394 + 0 NA intron (ENSMUSG00000048327.6, intron 4 of 8) protein_coding-intron (ENSMUSG00000048327.6, intron 4 of 8) 14910 ENSMUSG00000048327.6 ENSMUSG00000048327 ENSMUST00000052708 Ckap2l protein_coding Interval_25710 chr11 50956225 50956843 + 0 NA Intergenic Intergenic -2414 ENSMUSG00000083542.2 ENSMUSG00000083542 ENSMUST00000120726 Olfr1379-ps1 unprocessed_pseudogene Interval_163618 chr9 22585935 22586693 + 0 NA intron (ENSMUSG00000035919.16, intron 10 of 22) protein_coding-intron (ENSMUSG00000035919.16, intron 9 of 21) 73857 ENSMUSG00000035919.16 ENSMUSG00000035919 ENSMUST00000124076 Bbs9 protein_coding Interval_101415 chr2 181156388 181157099 + 0 NA exon (ENSMUSG00000016349.10, exon 1 of 8) protein_coding-exon (ENSMUSG00000016349.10, exon 1 of 8) 271 ENSMUSG00000016349.10 ENSMUSG00000016349 ENSMUST00000055990 Eef1a2 protein_coding Interval_50403 chr14 12529976 12531336 + 0 NA intron (ENSMUSG00000054423.14, intron 9 of 28) protein_coding-intron (ENSMUSG00000054423.14, intron 9 of 28) -88012 ENSMUSG00000114453.1 ENSMUSG00000114453 ENSMUST00000225784 Gm17805 processed_pseudogene Interval_62447 chr15 93074217 93074489 + 0 NA Intergenic Intergenic -14877 ENSMUSG00000115921.1 ENSMUSG00000115921 ENSMUST00000229620 Gm18685 processed_pseudogene Interval_108514 chr3 127850388 127851899 + 0 NA Intergenic Intergenic -10456 ENSMUSG00000105550.1 ENSMUSG00000105550 ENSMUST00000195996 Gm35585 lincRNA Interval_136116 chr6 51178079 51179143 + 0 NA Intergenic Intergenic 91299 ENSMUSG00000065505.1 ENSMUSG00000065505 ENSMUST00000083571 Mir148a miRNA Interval_61752 chr15 83843665 83844018 + 0 NA intron (ENSMUSG00000041708.12, intron 2 of 4) protein_coding-intron (ENSMUSG00000041708.12, intron 4 of 6) 51827 ENSMUSG00000041708.12 ENSMUSG00000041708 ENSMUST00000148868 Mpped1 protein_coding Interval_168371 chr9 79759387 79760308 + 0 NA promoter-TSS (ENSMUSG00000032330.7) protein_coding-promoter-TSS (ENSMUSG00000032330.7) -596 ENSMUSG00000032330.7 ENSMUSG00000032330 ENSMUST00000215452 Cox7a2 protein_coding Interval_50454 chr14 13510080 13510252 + 0 NA intron (ENSMUSG00000056296.17, intron 3 of 5) protein_coding-intron (ENSMUSG00000056296.17, intron 3 of 5) -156086 ENSMUSG00000081115.2 ENSMUSG00000081115 ENSMUST00000118492 Gm15913 processed_pseudogene Interval_49510 chr13 112518407 112518616 + 0 NA Intergenic Intergenic 43465 ENSMUSG00000021756.12 ENSMUSG00000021756 ENSMUST00000184949 Il6st protein_coding Interval_12496 chr1 194405426 194405788 + 0 NA Intergenic Intergenic -182848 ENSMUSG00000103692.1 ENSMUSG00000103692 ENSMUST00000193395 4930503O07Rik lincRNA Interval_105911 chr3 90036844 90037081 + 0 NA exon (ENSMUSG00000042520.16, exon 1 of 1) protein_coding-exon (ENSMUSG00000042520.16, exon 1 of 1) -15892 ENSMUSG00000027942.17 ENSMUSG00000027942 ENSMUST00000162390 4933434E20Rik protein_coding Interval_35672 chr12 27310291 27312527 + 0 NA Intergenic Intergenic 31165 ENSMUSG00000063632.6 ENSMUSG00000063632 ENSMUST00000079063 Sox11 protein_coding Interval_126939 chr5 97719327 97719612 + 0 NA Intergenic Intergenic -262448 ENSMUSG00000050553.3 ENSMUSG00000050553 ENSMUST00000059657 Gk2 protein_coding Interval_35708 chr12 28554821 28555158 + 0 NA intron (ENSMUSG00000020636.14, intron 11 of 11) protein_coding-intron (ENSMUSG00000020636.14, intron 11 of 11) -2590 ENSMUSG00000020633.14 ENSMUSG00000020633 ENSMUST00000020963 Dcdc2c protein_coding Interval_11578 chr1 182898200 182898413 + 0 NA Intergenic Intergenic -9404 ENSMUSG00000102291.1 ENSMUSG00000102291 ENSMUST00000192563 Gm37542 TEC Interval_156042 chr8 43159050 43159470 + 0 NA exon (ENSMUSG00000109991.1, exon 1 of 3) processed_pseudogene-exon (ENSMUSG00000109991.1, exon 1 of 3) 506 ENSMUSG00000109991.1 ENSMUSG00000109991 ENSMUST00000209609 Gm6284 processed_pseudogene Interval_164651 chr9 40335438 40335718 + 0 NA intron (ENSMUSG00000040111.17, intron 2 of 20) protein_coding-intron (ENSMUSG00000040111.17, intron 2 of 19) 2104 ENSMUSG00000087047.8 ENSMUSG00000087047 ENSMUST00000156511 1700110K17Rik antisense Interval_142834 chr6 146292438 146292994 + 0 NA intron (ENSMUSG00000030287.15, intron 1 of 2) protein_coding-intron (ENSMUSG00000030287.15, intron 36 of 56) -21736 ENSMUSG00000107801.1 ENSMUSG00000107801 ENSMUST00000203251 Gm44086 TEC Interval_78261 chr18 10939120 10939548 + 0 NA Intergenic Intergenic 10450 ENSMUSG00000117563.1 ENSMUSG00000117563 ENSMUST00000235119 Gm7575 processed_pseudogene Interval_143484 chr7 7267772 7268090 + 0 NA promoter-TSS (ENSMUSG00000110105.1) protein_coding-promoter-TSS (ENSMUSG00000110105.1) -655 ENSMUSG00000110105.1 ENSMUSG00000110105 ENSMUST00000209788 Gm45844 protein_coding Interval_165041 chr9 44096495 44097217 + 0 NA intron (ENSMUSG00000053128.15, intron 1 of 1) protein_coding-intron (ENSMUSG00000053128.15, intron 2 of 2) 4388 ENSMUSG00000032010.15 ENSMUSG00000032010 ENSMUST00000176022 Usp2 protein_coding Interval_158029 chr8 78137412 78137901 + 0 NA Intergenic Intergenic 29696 ENSMUSG00000109948.1 ENSMUSG00000109948 ENSMUST00000210236 Gm45288 processed_pseudogene Interval_6218 chr1 102350765 102351257 + 0 NA Intergenic Intergenic 63010 ENSMUSG00000088510.1 ENSMUSG00000088510 ENSMUST00000157885 Gm23036 snoRNA Interval_103080 chr3 35101948 35102327 + 0 NA Intergenic Intergenic 173994 ENSMUSG00000105651.1 ENSMUSG00000105651 ENSMUST00000198307 1700017M07Rik lincRNA Interval_2431 chr1 39291755 39292816 + 0 NA intron (ENSMUSG00000026077.15, intron 3 of 20) protein_coding-intron (ENSMUSG00000026077.15, intron 3 of 20) -15720 ENSMUSG00000092553.1 ENSMUSG00000092553 ENSMUST00000174365 Gm20428 processed_pseudogene Interval_170288 chr9 106707836 106708210 + 0 NA intron (ENSMUSG00000040661.6, intron 14 of 21) protein_coding-intron (ENSMUSG00000040661.6, intron 14 of 21) -22721 ENSMUSG00000040813.16 ENSMUSG00000040813 ENSMUST00000185645 Tex264 protein_coding Interval_128534 chr5 113879169 113879401 + 0 NA exon (ENSMUSG00000004530.12, exon 2 of 2) protein_coding-exon (ENSMUSG00000004530.12, exon 2 of 2) 19124 ENSMUSG00000106623.1 ENSMUSG00000106623 ENSMUST00000198299 Gm43335 TEC Interval_137145 chr6 68130410 68131260 + 0 NA Intergenic Intergenic 9789 ENSMUSG00000094335.2 ENSMUSG00000094335 ENSMUST00000103317 Igkv1-117 IG_V_gene Interval_137776 chr6 82335399 82335981 + 0 NA Intergenic Intergenic -12707 ENSMUSG00000107809.1 ENSMUSG00000107809 ENSMUST00000204556 Gm44209 TEC Interval_77048 chr17 86007939 86009344 + 0 NA intron (ENSMUSG00000024135.10, intron 16 of 20) protein_coding-intron (ENSMUSG00000024135.10, intron 16 of 20) 31723 ENSMUSG00000024135.10 ENSMUSG00000024135 ENSMUST00000234595 Srbd1 protein_coding Interval_73946 chr17 45613031 45613477 + 0 NA Intergenic Intergenic -7425 ENSMUSG00000065743.1 ENSMUSG00000065743 ENSMUST00000083809 Gm25008 snRNA Interval_56909 chr14 123121796 123122902 + 0 NA intron (ENSMUSG00000115016.1, intron 1 of 3) processed_transcript-intron (ENSMUSG00000115016.1, intron 1 of 3) 43136 ENSMUSG00000115758.1 ENSMUSG00000115758 ENSMUST00000226283 Gm49294 processed_pseudogene Interval_154269 chr8 13940674 13941846 + 0 NA TTS (ENSMUSG00000038365.8) protein_coding-TTS (ENSMUSG00000038365.8) 14281 ENSMUSG00000038365.8 ENSMUSG00000038365 ENSMUST00000209310 Fbxo25 protein_coding Interval_124399 chr5 45513052 45513695 + 0 NA TTS (ENSMUSG00000039682.12) protein_coding-TTS (ENSMUSG00000039682.12) -6856 ENSMUSG00000015804.14 ENSMUSG00000015804 ENSMUST00000139586 Med28 protein_coding Interval_56857 chr14 122467755 122469214 + 0 NA Intergenic Intergenic 6715 ENSMUSG00000085555.9 ENSMUSG00000085555 ENSMUST00000177306 2610035F20Rik processed_transcript Interval_106386 chr3 95827561 95829794 + 0 NA Intergenic Intergenic 4131 ENSMUSG00000015748.13 ENSMUSG00000015748 ENSMUST00000161073 Prpf3 protein_coding Interval_39402 chr12 87191235 87192321 + 0 NA intron (ENSMUSG00000034111.6, intron 1 of 5) protein_coding-intron (ENSMUSG00000034111.6, intron 1 of 5) -7945 ENSMUSG00000090812.8 ENSMUSG00000090812 ENSMUST00000169669 Samd15 protein_coding Interval_120420 chr4 148487134 148488440 + 0 NA intron (ENSMUSG00000028991.15, intron 25 of 57) protein_coding-intron (ENSMUSG00000028991.15, intron 25 of 57) 12673 ENSMUSG00000028989.3 ENSMUSG00000028989 ENSMUST00000030840 Angptl7 protein_coding Interval_138718 chr6 91378928 91379175 + 0 NA intron (ENSMUSG00000030093.7, intron 3 of 3) protein_coding-intron (ENSMUSG00000030093.7, intron 3 of 3) -13954 ENSMUSG00000030093.7 ENSMUSG00000030093 ENSMUST00000132936 Wnt7a protein_coding Interval_162657 chr9 7554356 7554657 + 0 NA Intergenic Intergenic -3950 ENSMUSG00000005800.3 ENSMUSG00000005800 ENSMUST00000018765 Mmp8 protein_coding Interval_109260 chr3 138455491 138456517 + 0 NA TTS (ENSMUSG00000028138.8) protein_coding-TTS (ENSMUSG00000028138.8) 12823 ENSMUSG00000028138.8 ENSMUSG00000028138 ENSMUST00000159392 Adh5 protein_coding Interval_135239 chr6 37732544 37732778 + 0 NA Intergenic Intergenic -45466 ENSMUSG00000107035.1 ENSMUSG00000107035 ENSMUST00000201305 Ybx1-ps2 processed_pseudogene Interval_131031 chr5 134659327 134659544 + 0 NA TTS (ENSMUSG00000029674.13) protein_coding-TTS (ENSMUSG00000029674.13) 4770 ENSMUSG00000029674.13 ENSMUSG00000029674 ENSMUST00000132027 Limk1 protein_coding Interval_71717 chr17 25662160 25663053 + 0 NA exon (ENSMUSG00000002279.19, exon 11 of 11) protein_coding-exon (ENSMUSG00000002279.19, exon 11 of 11) 31614 ENSMUSG00000096451.1 ENSMUSG00000096451 ENSMUST00000180010 Gm22645 snRNA Interval_57748 chr15 18219488 18220334 + 0 NA intron (ENSMUSG00000098150.2, intron 1 of 7) processed_transcript-intron (ENSMUSG00000098150.2, intron 1 of 7) 56030 ENSMUSG00000098222.2 ENSMUSG00000098222 ENSMUST00000182954 Gm8318 processed_pseudogene Interval_92437 chr2 59717530 59717784 + 0 NA intron (ENSMUSG00000035168.16, intron 1 of 1) protein_coding-intron (ENSMUSG00000035168.16, intron 3 of 26) -88411 ENSMUSG00000035168.16 ENSMUSG00000035168 ENSMUST00000147650 Tanc1 protein_coding Interval_29501 chr11 84486190 84486493 + 0 NA intron (ENSMUSG00000018697.14, intron 5 of 8) protein_coding-intron (ENSMUSG00000018697.14, intron 5 of 12) 27181 ENSMUSG00000018697.14 ENSMUSG00000018697 ENSMUST00000148434 Aatf protein_coding Interval_136924 chr6 64639778 64640369 + 0 NA intron (ENSMUSG00000071424.10, intron 14 of 15) protein_coding-intron (ENSMUSG00000071424.10, intron 14 of 15) -23115 ENSMUSG00000071424.10 ENSMUSG00000071424 ENSMUST00000210324 Grid2 protein_coding Interval_133279 chr5 151060523 151061075 + 0 NA exon (ENSMUSG00000016128.14, exon 6 of 14) protein_coding-exon (ENSMUSG00000016128.14, exon 6 of 14) 47936 ENSMUSG00000016128.14 ENSMUSG00000016128 ENSMUST00000202866 Stard13 protein_coding Interval_6600 chr1 118104280 118105517 + 0 NA Intergenic Intergenic 40780 ENSMUSG00000101590.1 ENSMUSG00000101590 ENSMUST00000186304 Gm29104 unprocessed_pseudogene Interval_8779 chr1 151020103 151020912 + 0 NA Intergenic Intergenic 19467 ENSMUSG00000099622.1 ENSMUSG00000099622 ENSMUST00000191173 Gm29188 lincRNA Interval_162961 chr9 13770327 13770546 + 0 NA intron (ENSMUSG00000031918.16, intron 1 of 3) protein_coding-intron (ENSMUSG00000031918.16, intron 1 of 14) 21117 ENSMUSG00000031918.16 ENSMUSG00000031918 ENSMUST00000146901 Mtmr2 protein_coding Interval_36822 chr12 54396961 54397971 + 0 NA Intergenic Intergenic -2710 ENSMUSG00000112053.1 ENSMUSG00000112053 ENSMUST00000217924 Gm46328 lincRNA Interval_54894 chr14 76077369 76078234 + 0 NA Intergenic Intergenic 32959 ENSMUSG00000022008.4 ENSMUSG00000022008 ENSMUST00000022585 Gpalpp1 protein_coding Interval_131134 chr5 135349655 135350202 + 0 NA promoter-TSS (ENSMUSG00000040013.11) protein_coding-promoter-TSS (ENSMUSG00000040013.11) 86 ENSMUSG00000040013.11 ENSMUSG00000040013 ENSMUST00000201534 Fkbp6 protein_coding Interval_15488 chr10 48843352 48843939 + 0 NA Intergenic Intergenic -8786 ENSMUSG00000111298.1 ENSMUSG00000111298 ENSMUST00000216911 Gm3473 processed_pseudogene Interval_110754 chr4 8084852 8085623 + 0 NA Intergenic Intergenic -33383 ENSMUSG00000083068.1 ENSMUSG00000083068 ENSMUST00000120050 Gm11800 processed_pseudogene Interval_110368 chr3 157515032 157515310 + 0 NA Intergenic Intergenic 18919 ENSMUSG00000105834.1 ENSMUSG00000105834 ENSMUST00000196791 4930592C13Rik antisense Interval_111654 chr4 25307780 25308512 + 0 NA exon (ENSMUSG00000083737.1, exon 1 of 1) processed_pseudogene-exon (ENSMUSG00000083737.1, exon 1 of 1) 316 ENSMUSG00000083737.1 ENSMUSG00000083737 ENSMUST00000121989 Prdx6-ps2 processed_pseudogene Interval_25811 chr11 51872416 51874551 + 0 NA Intergenic Intergenic -16358 ENSMUSG00000020387.15 ENSMUSG00000020387 ENSMUST00000151277 Jade2 protein_coding Interval_87408 chr19 49235169 49235826 + 0 NA Intergenic Intergenic 144824 ENSMUSG00000118111.1 ENSMUSG00000118111 ENSMUST00000236912 Gm50442 lincRNA Interval_139333 chr6 99007042 99008762 + 0 NA intron (ENSMUSG00000030067.17, intron 4 of 4) protein_coding-intron (ENSMUSG00000030067.17, intron 5 of 15) 36540 ENSMUSG00000030067.17 ENSMUSG00000030067 ENSMUST00000175838 Foxp1 protein_coding Interval_32649 chr11 109414989 109415589 + 0 NA intron (ENSMUSG00000045065.7, intron 1 of 1) protein_coding-intron (ENSMUSG00000045065.7, intron 1 of 1) 1372 ENSMUSG00000045065.7 ENSMUSG00000045065 ENSMUST00000055404 9930022D16Rik protein_coding Interval_52812 chr14 50829902 50830382 + 0 NA promoter-TSS (ENSMUSG00000006281.8) protein_coding-promoter-TSS (ENSMUSG00000006281.8) -71 ENSMUSG00000006281.8 ENSMUSG00000006281 ENSMUST00000226789 Tep1 protein_coding Interval_73897 chr17 45373872 45374819 + 0 NA Intergenic Intergenic 59196 ENSMUSG00000023932.9 ENSMUSG00000023932 ENSMUST00000232910 Cdc5l protein_coding Interval_135556 chr6 40392810 40393700 + 0 NA intron (ENSMUSG00000029916.11, intron 6 of 7) protein_coding-intron (ENSMUSG00000029916.11, intron 14 of 15) 38153 ENSMUSG00000037172.14 ENSMUSG00000037172 ENSMUST00000200994 Dennd11 protein_coding Interval_143876 chr7 16881008 16881195 + 0 NA intron (ENSMUSG00000078794.4, intron 1 of 3) protein_coding-intron (ENSMUSG00000078794.4, intron 1 of 3) 5784 ENSMUSG00000078794.4 ENSMUSG00000078794 ENSMUST00000108493 Dact3 protein_coding Interval_14428 chr10 33508844 33509512 + 0 NA Intergenic Intergenic -31706 ENSMUSG00000112329.1 ENSMUSG00000112329 ENSMUST00000220089 Gm47908 TEC Interval_37820 chr12 72257285 72257864 + 0 NA intron (ENSMUSG00000021087.18, intron 3 of 8) protein_coding-intron (ENSMUSG00000021087.18, intron 3 of 8) -21026 ENSMUSG00000021087.18 ENSMUSG00000021087 ENSMUST00000221756 Rtn1 protein_coding Interval_78422 chr18 12720143 12721347 + 0 NA intron (ENSMUSG00000024424.15, intron 7 of 7) protein_coding-intron (ENSMUSG00000024424.15, intron 7 of 13) 5934 ENSMUSG00000087950.1 ENSMUSG00000087950 ENSMUST00000157325 Mir1948 miRNA Interval_629 chr1 9240346 9241330 + 0 NA intron (ENSMUSG00000025909.16, intron 1 of 20) protein_coding-intron (ENSMUSG00000025909.16, intron 2 of 4) 18296 ENSMUSG00000103819.1 ENSMUSG00000103819 ENSMUST00000195333 Gm38008 processed_pseudogene Interval_152889 chr7 139509485 139509711 + 0 NA intron (ENSMUSG00000025477.14, intron 3 of 3) protein_coding-intron (ENSMUSG00000025477.14, intron 4 of 15) -7061 ENSMUSG00000025477.14 ENSMUSG00000025477 ENSMUST00000152475 Inpp5a protein_coding Interval_124541 chr5 50201047 50203679 + 0 NA Intergenic Intergenic -14884 ENSMUSG00000105020.1 ENSMUSG00000105020 ENSMUST00000196032 Gm7205 unprocessed_pseudogene Interval_59212 chr15 48779388 48780459 + 0 NA intron (ENSMUSG00000022311.15, intron 1 of 70) protein_coding-intron (ENSMUSG00000022311.15, intron 1 of 70) 12140 ENSMUSG00000022311.15 ENSMUSG00000022311 ENSMUST00000160655 Csmd3 protein_coding Interval_33175 chr11 114984598 114985053 + 0 NA intron (ENSMUSG00000034641.2, intron 3 of 3) protein_coding-intron (ENSMUSG00000034641.2, intron 3 of 3) 5097 ENSMUSG00000034641.2 ENSMUSG00000034641 ENSMUST00000045075 Cd300ld protein_coding Interval_59398 chr15 52160500 52161491 + 0 NA Intergenic Intergenic 71687 ENSMUSG00000115457.1 ENSMUSG00000115457 ENSMUST00000227885 Gm2387 processed_pseudogene Interval_38422 chr12 78947133 78947327 + 0 NA Intergenic Intergenic -40266 ENSMUSG00000021118.7 ENSMUSG00000021118 ENSMUST00000021544 Plek2 protein_coding Interval_107891 chr3 116622464 116623359 + 0 NA intron (ENSMUSG00000027959.14, intron 14 of 16) protein_coding-intron (ENSMUSG00000027959.14, intron 15 of 17) -3012 ENSMUSG00000027959.14 ENSMUSG00000027959 ENSMUST00000198747 Sass6 protein_coding Interval_153082 chr7 141244130 141244457 + 0 NA intron (ENSMUSG00000038611.17, intron 6 of 16) protein_coding-intron (ENSMUSG00000038611.17, intron 6 of 17) 8870 ENSMUSG00000038611.17 ENSMUSG00000038611 ENSMUST00000144250 Phrf1 protein_coding Interval_6580 chr1 117519550 117520177 + 0 NA Intergenic Intergenic -16438 ENSMUSG00000065865.1 ENSMUSG00000065865 ENSMUST00000083931 Gm24030 snRNA Interval_32652 chr11 109431363 109431782 + 0 NA TTS (ENSMUSG00000020610.17) protein_coding-TTS (ENSMUSG00000020610.17) 5352 ENSMUSG00000020610.17 ENSMUSG00000020610 ENSMUST00000154875 Amz2 protein_coding Interval_106959 chr3 102193545 102194988 + 0 NA intron (ENSMUSG00000027860.15, intron 2 of 7) protein_coding-intron (ENSMUSG00000027860.15, intron 2 of 7) -9690 ENSMUSG00000089916.1 ENSMUSG00000089916 ENSMUST00000160105 Gm16160 antisense Interval_40298 chr12 103306380 103307313 + 0 NA Intergenic Intergenic -4129 ENSMUSG00000096753.7 ENSMUSG00000096753 ENSMUST00000179363 Fam181a protein_coding Interval_147402 chr7 66476938 66478024 + 0 NA Intergenic Intergenic 35595 ENSMUSG00000109114.1 ENSMUSG00000109114 ENSMUST00000208297 Gm44753 lincRNA Interval_104101 chr3 58583011 58583333 + 0 NA intron (ENSMUSG00000075700.9, intron 1 of 3) protein_coding-intron (ENSMUSG00000075700.9, intron 1 of 5) 6474 ENSMUSG00000075700.9 ENSMUSG00000075700 ENSMUST00000125815 Selenot protein_coding Interval_170036 chr9 103907058 103908821 + 0 NA intron (ENSMUSG00000099722.3, intron 3 of 4) lincRNA-intron (ENSMUSG00000099722.3, intron 3 of 4) 19930 ENSMUSG00000100266.2 ENSMUSG00000100266 ENSMUST00000187540 Gm5372 processed_pseudogene Interval_131891 chr5 140628923 140629547 + 0 NA intron (ENSMUSG00000036565.7, intron 11 of 12) protein_coding-intron (ENSMUSG00000036565.7, intron 11 of 13) 17726 ENSMUSG00000029570.5 ENSMUSG00000029570 ENSMUST00000199848 Lfng protein_coding Interval_159441 chr8 94724810 94725115 + 0 NA Intergenic Intergenic -20718 ENSMUSG00000031779.3 ENSMUSG00000031779 ENSMUST00000156137 Ccl22 protein_coding Interval_118555 chr4 132472751 132473529 + 0 NA Intergenic Intergenic -9809 ENSMUSG00000066042.4 ENSMUSG00000066042 ENSMUST00000123604 Med18 protein_coding Interval_18197 chr10 83632081 83632834 + 0 NA intron (ENSMUSG00000020263.14, intron 2 of 8) protein_coding-intron (ENSMUSG00000020263.14, intron 2 of 20) -26814 ENSMUSG00000112072.1 ENSMUSG00000112072 ENSMUST00000218849 Gm47244 processed_pseudogene Interval_5603 chr1 90143175 90143405 + 0 NA intron (ENSMUSG00000026301.16, intron 2 of 18) protein_coding-intron (ENSMUSG00000026301.16, intron 2 of 18) -10338 ENSMUSG00000100850.1 ENSMUSG00000100850 ENSMUST00000190254 4930434B07Rik lincRNA Interval_17584 chr10 77984514 77985802 + 0 NA TTS (ENSMUSG00000020284.16) protein_coding-TTS (ENSMUSG00000020284.16) 6504 ENSMUSG00000020284.16 ENSMUSG00000020284 ENSMUST00000129277 Cfap410 protein_coding Interval_50221 chr14 10507498 10507788 + 0 NA intron (ENSMUSG00000060579.13, intron 3 of 4) protein_coding-intron (ENSMUSG00000060579.13, intron 4 of 9) 28969 ENSMUSG00000065328.1 ENSMUSG00000065328 ENSMUST00000083394 Gm22053 snoRNA Interval_37779 chr12 71949570 71950579 + 0 NA intron (ENSMUSG00000034574.10, intron 12 of 25) protein_coding-intron (ENSMUSG00000034574.10, intron 12 of 25) 99185 ENSMUSG00000114155.1 ENSMUSG00000114155 ENSMUST00000221336 Gm7986 processed_pseudogene Interval_56996 chr15 3707740 3708132 + 0 NA Intergenic Intergenic 38939 ENSMUSG00000098177.1 ENSMUSG00000098177 ENSMUST00000181990 Gm4823 processed_pseudogene Interval_25690 chr11 50798806 50799114 + 0 NA TTS (ENSMUSG00000036545.9) protein_coding-TTS (ENSMUSG00000036545.9) -10691 ENSMUSG00000088205.1 ENSMUSG00000088205 ENSMUST00000157580 Gm23392 rRNA Interval_55749 chr14 99563981 99564173 + 0 NA intron (ENSMUSG00000115580.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000115580.1, intron 1 of 2) 41532 ENSMUSG00000115580.1 ENSMUSG00000115580 ENSMUST00000228876 Gm41230 lincRNA Interval_44586 chr13 46515278 46516671 + 0 NA intron (ENSMUSG00000021373.16, intron 1 of 11) protein_coding-intron (ENSMUSG00000021373.16, intron 1 of 12) -2710 ENSMUSG00000087913.1 ENSMUSG00000087913 ENSMUST00000157288 Gm24915 rRNA Interval_143739 chr7 15993456 15993716 + 0 NA intron (ENSMUSG00000070808.4, intron 4 of 14) protein_coding-intron (ENSMUSG00000070808.4, intron 3 of 13) 21703 ENSMUSG00000109984.1 ENSMUSG00000109984 ENSMUST00000210035 Gm38948 lincRNA Interval_27354 chr11 66913996 66914744 + 0 NA intron (ENSMUSG00000048070.4, intron 1 of 1) protein_coding-intron (ENSMUSG00000048070.4, intron 1 of 1) 2389 ENSMUSG00000048070.4 ENSMUSG00000048070 ENSMUST00000123434 Pirt protein_coding Interval_149031 chr7 92506497 92506949 + 0 NA Intergenic Intergenic -54426 ENSMUSG00000030613.13 ENSMUSG00000030613 ENSMUST00000085017 Ccdc90b protein_coding Interval_153447 chr7 144857145 144858928 + 0 NA intron (ENSMUSG00000050917.5, intron 1 of 2) protein_coding-intron (ENSMUSG00000050917.5, intron 1 of 2) 10669 ENSMUSG00000050917.5 ENSMUSG00000050917 ENSMUST00000060336 Fgf4 protein_coding Interval_117080 chr4 119405868 119406062 + 0 NA intron (ENSMUSG00000028637.16, intron 1 of 14) protein_coding-intron (ENSMUSG00000028637.16, intron 1 of 14) 12465 ENSMUSG00000118403.1 ENSMUSG00000118403 ENSMUST00000238574 Gm50484 antisense Interval_167319 chr9 67324381 67325396 + 0 NA exon (ENSMUSG00000052698.15, exon 2 of 33) protein_coding-exon (ENSMUSG00000052698.15, exon 2 of 33) 5759 ENSMUSG00000052698.15 ENSMUSG00000052698 ENSMUST00000213584 Tln2 protein_coding Interval_114312 chr4 72199083 72201772 + 0 NA promoter-TSS (ENSMUSG00000008305.18) protein_coding-promoter-TSS (ENSMUSG00000008305.18) -921 ENSMUSG00000084910.1 ENSMUSG00000084910 ENSMUST00000122923 C630043F03Rik processed_transcript Interval_162692 chr9 7852175 7853922 + 0 NA intron (ENSMUSG00000032000.17, intron 6 of 8) protein_coding-intron (ENSMUSG00000032000.17, intron 6 of 8) 7278 ENSMUSG00000032000.17 ENSMUSG00000032000 ENSMUST00000159672 Birc3 protein_coding Interval_51424 chr14 27410083 27410826 + 0 NA Intergenic Intergenic -29604 ENSMUSG00000093034.1 ENSMUSG00000093034 ENSMUST00000175293 Gm23633 miRNA Interval_48215 chr13 97227557 97228477 + 0 NA Intergenic Intergenic -13088 ENSMUSG00000041773.8 ENSMUSG00000041773 ENSMUST00000041623 Enc1 protein_coding Interval_127723 chr5 107093906 107094878 + 0 NA Intergenic Intergenic 41296 ENSMUSG00000106643.1 ENSMUSG00000106643 ENSMUST00000199780 Gm43422 TEC Interval_88464 chr2 5352892 5353551 + 0 NA intron (ENSMUSG00000039145.16, intron 5 of 10) protein_coding-intron (ENSMUSG00000039145.16, intron 5 of 10) 69571 ENSMUSG00000080820.1 ENSMUSG00000080820 ENSMUST00000117204 Gm13197 processed_pseudogene Interval_116419 chr4 111682592 111683159 + 0 NA Intergenic Intergenic -37188 ENSMUSG00000034401.16 ENSMUSG00000034401 ENSMUST00000132802 Spata6 protein_coding Interval_76632 chr17 83001243 83001813 + 0 NA Intergenic Intergenic 45532 ENSMUSG00000117472.1 ENSMUSG00000117472 ENSMUST00000234284 Gm4601 processed_pseudogene Interval_25277 chr11 46067477 46069957 + 0 NA intron (ENSMUSG00000011256.16, intron 3 of 22) protein_coding-intron (ENSMUSG00000011256.16, intron 3 of 22) -16396 ENSMUSG00000069899.3 ENSMUSG00000069899 ENSMUST00000154156 Gm12166 protein_coding Interval_27526 chr11 68407640 68409140 + 0 NA Intergenic Intergenic -21378 ENSMUSG00000020902.12 ENSMUSG00000020902 ENSMUST00000135141 Ntn1 protein_coding Interval_33421 chr11 116465369 116466575 + 0 NA promoter-TSS (ENSMUSG00000086826.1) antisense-promoter-TSS (ENSMUSG00000086826.1) 269 ENSMUSG00000070331.14 ENSMUSG00000070331 ENSMUST00000140697 Qrich2 protein_coding Interval_93092 chr2 70042761 70043553 + 0 NA TTS (ENSMUSG00000086132.1) processed_transcript-TTS (ENSMUSG00000086132.1) 4246 ENSMUSG00000086132.1 ENSMUSG00000086132 ENSMUST00000140978 Gm13631 processed_transcript Interval_35896 chr12 31697440 31697746 + 0 NA intron (ENSMUSG00000035933.5, intron 6 of 22) protein_coding-intron (ENSMUSG00000035933.5, intron 6 of 22) 16333 ENSMUSG00000044067.7 ENSMUSG00000044067 ENSMUST00000174480 Gpr22 protein_coding Interval_49155 chr13 108722641 108722863 + 0 NA intron (ENSMUSG00000021699.17, intron 3 of 3) protein_coding-intron (ENSMUSG00000021699.17, intron 1 of 16) 52149 ENSMUSG00000059751.7 ENSMUSG00000059751 ENSMUST00000074680 Rps3a3 processed_pseudogene Interval_104830 chr3 75632261 75632440 + 0 NA intron (ENSMUSG00000027834.15, intron 6 of 8) protein_coding-intron (ENSMUSG00000027834.15, intron 6 of 8) 13003 ENSMUSG00000102625.1 ENSMUSG00000102625 ENSMUST00000192682 Gm37672 TEC Interval_82690 chr18 75960370 75960877 + 0 NA intron (ENSMUSG00000044646.15, intron 2 of 5) protein_coding-intron (ENSMUSG00000044646.15, intron 2 of 4) 55054 ENSMUSG00000118311.1 ENSMUSG00000118311 ENSMUST00000238127 1700003O11Rik antisense Interval_158475 chr8 83929543 83930509 + 0 NA promoter-TSS (ENSMUSG00000105569.1) miRNA-promoter-TSS (ENSMUSG00000105569.1) -196 ENSMUSG00000105878.1 ENSMUSG00000105878 ENSMUST00000200106 Gm44330 miRNA Interval_60325 chr15 72888133 72888513 + 0 NA intron (ENSMUSG00000047921.17, intron 16 of 16) protein_coding-intron (ENSMUSG00000047921.17, intron 16 of 21) -25034 ENSMUSG00000096173.2 ENSMUSG00000096173 ENSMUST00000166418 Gm3150 processed_pseudogene Interval_26851 chr11 61074960 61075200 + 0 NA Intergenic Intergenic 9276 ENSMUSG00000042529.14 ENSMUSG00000042529 ENSMUST00000108717 Kcnj12 protein_coding Interval_119304 chr4 136749001 136751443 + 0 NA intron (ENSMUSG00000028664.14, intron 3 of 15) protein_coding-intron (ENSMUSG00000028664.14, intron 3 of 15) -56182 ENSMUSG00000028664.14 ENSMUSG00000028664 ENSMUST00000144573 Ephb2 protein_coding Interval_30899 chr11 97141937 97142310 + 0 NA intron (ENSMUSG00000038517.15, intron 7 of 9) protein_coding-intron (ENSMUSG00000038517.15, intron 6 of 8) 4296 ENSMUSG00000099286.1 ENSMUSG00000099286 ENSMUST00000183796 Mir7235 miRNA Interval_53565 chr14 59338908 59339200 + 0 NA intron (ENSMUSG00000091649.3, intron 1 of 8) protein_coding-intron (ENSMUSG00000091649.3, intron 1 of 8) 2297 ENSMUSG00000091649.3 ENSMUSG00000091649 ENSMUST00000166121 Phf11b protein_coding Interval_115452 chr4 99059108 99059841 + 0 NA intron (ENSMUSG00000028556.15, intron 12 of 47) protein_coding-intron (ENSMUSG00000028556.15, intron 12 of 48) 7637 ENSMUSG00000028556.15 ENSMUSG00000028556 ENSMUST00000206604 Dock7 protein_coding Interval_50120 chr14 8108636 8108841 + 0 NA intron (ENSMUSG00000033885.15, intron 1 of 2) protein_coding-intron (ENSMUSG00000033885.15, intron 1 of 17) 10515 ENSMUSG00000033885.15 ENSMUSG00000033885 ENSMUST00000224462 Pxk protein_coding Interval_48258 chr13 97488389 97489867 + 0 NA intron (ENSMUSG00000078952.9, intron 2 of 2) lincRNA-intron (ENSMUSG00000078952.9, intron 1 of 1) 6173 ENSMUSG00000078952.9 ENSMUSG00000078952 ENSMUST00000180371 Lncenc1 lincRNA Interval_74912 chr17 57247125 57250949 + 0 NA promoter-TSS (ENSMUSG00000019487.11) protein_coding-promoter-TSS (ENSMUSG00000019487.11) -465 ENSMUSG00000019487.11 ENSMUSG00000019487 ENSMUST00000224904 Trip10 protein_coding Interval_63191 chr15 99658405 99659023 + 0 NA Intergenic Intergenic -7102 ENSMUSG00000023015.14 ENSMUSG00000023015 ENSMUST00000109581 Racgap1 protein_coding Interval_101629 chr3 8129250 8130088 + 0 NA Intergenic Intergenic -84663 ENSMUSG00000103725.1 ENSMUSG00000103725 ENSMUST00000195642 Gm7103 processed_pseudogene Interval_78088 chr18 7881727 7882067 + 0 NA intron (ENSMUSG00000024283.15, intron 3 of 13) protein_coding-intron (ENSMUSG00000024283.15, intron 3 of 13) 12396 ENSMUSG00000024283.15 ENSMUSG00000024283 ENSMUST00000167542 Wac protein_coding Interval_108200 chr3 122450049 122450600 + 0 NA intron (ENSMUSG00000104574.1, intron 1 of 1) protein_coding-intron (ENSMUSG00000028121.8, intron 2 of 11) 8736 ENSMUSG00000104574.1 ENSMUSG00000104574 ENSMUST00000197198 Gm42836 antisense Interval_133260 chr5 150913640 150914085 + 0 NA Intergenic Intergenic -31220 ENSMUSG00000107047.1 ENSMUSG00000107047 ENSMUST00000200887 Gm43298 lincRNA Interval_108705 chr3 130537068 130537630 + 0 NA intron (ENSMUSG00000058897.18, intron 18 of 37) protein_coding-intron (ENSMUSG00000058897.18, intron 18 of 37) -2140 ENSMUSG00000105011.1 ENSMUSG00000105011 ENSMUST00000196743 Gm43210 TEC Interval_171490 chr9 118760066 118760368 + 0 NA intron (ENSMUSG00000039115.13, intron 1 of 13) protein_coding-intron (ENSMUSG00000039115.13, intron 15 of 27) 77738 ENSMUSG00000066270.3 ENSMUSG00000066270 ENSMUST00000139408 Gm10157 processed_pseudogene Interval_158195 chr8 79715059 79715275 + 0 NA intron (ENSMUSG00000036977.8, intron 2 of 4) protein_coding-intron (ENSMUSG00000036977.8, intron 2 of 4) 3316 ENSMUSG00000036977.8 ENSMUSG00000036977 ENSMUST00000210485 Anapc10 protein_coding Interval_111554 chr4 22979529 22979888 + 0 NA Intergenic Intergenic -41273 ENSMUSG00000028244.6 ENSMUSG00000028244 ENSMUST00000123729 1700025O08Rik lincRNA Interval_155560 chr8 34514463 34514739 + 0 NA Intergenic Intergenic 7394 ENSMUSG00000109580.1 ENSMUSG00000109580 ENSMUST00000209683 Gm8268 processed_pseudogene Interval_5839 chr1 92389070 92389554 + 0 NA Intergenic Intergenic 41220 ENSMUSG00000101522.1 ENSMUSG00000101522 ENSMUST00000190873 Gm7837 processed_pseudogene Interval_102626 chr3 28643257 28643643 + 0 NA intron (ENSMUSG00000027692.16, intron 21 of 30) protein_coding-intron (ENSMUSG00000027692.16, intron 21 of 30) -78067 ENSMUSG00000027690.13 ENSMUSG00000027690 ENSMUST00000169047 Slc2a2 protein_coding Interval_92705 chr2 63279950 63280176 + 0 NA Intergenic Intergenic -95801 ENSMUSG00000059742.10 ENSMUSG00000059742 ENSMUST00000131799 Kcnh7 protein_coding Interval_45508 chr13 55528992 55530362 + 0 NA promoter-TSS (ENSMUSG00000035711.5) protein_coding-promoter-TSS (ENSMUSG00000035711.5) -1123 ENSMUSG00000035711.5 ENSMUSG00000035711 ENSMUST00000223563 Dok3 protein_coding Interval_6328 chr1 105944378 105944663 + 0 NA Intergenic Intergenic -1034 ENSMUSG00000089206.1 ENSMUSG00000089206 ENSMUST00000158581 Gm26214 snRNA Interval_17484 chr10 77190855 77191993 + 0 NA Intergenic Intergenic 54324 ENSMUSG00000112612.1 ENSMUSG00000112612 ENSMUST00000218871 Gm7775 processed_pseudogene Interval_62671 chr15 96152450 96152875 + 0 NA intron (ENSMUSG00000097536.2, intron 5 of 6) lincRNA-intron (ENSMUSG00000097536.2, intron 5 of 6) -97837 ENSMUSG00000078925.11 ENSMUSG00000078925 ENSMUST00000140253 D030018L15Rik lincRNA Interval_49003 chr13 106841824 106842651 + 0 NA intron (ENSMUSG00000042590.17, intron 1 of 5) transcribed_unitary_pseudogene-intron (ENSMUSG00000118423.1, intron 1 of 3) -5916 ENSMUSG00000042590.17 ENSMUSG00000042590 ENSMUST00000186005 Ipo11 protein_coding Interval_107105 chr3 103584749 103585691 + 0 NA intron (ENSMUSG00000027849.19, intron 1 of 7) protein_coding-intron (ENSMUSG00000027849.19, intron 1 of 7) 9842 ENSMUSG00000027849.19 ENSMUSG00000027849 ENSMUST00000118563 Syt6 protein_coding Interval_59740 chr15 58978881 58979311 + 0 NA intron (ENSMUSG00000022353.10, intron 3 of 14) protein_coding-intron (ENSMUSG00000022353.10, intron 3 of 14) -5040 ENSMUSG00000115062.1 ENSMUSG00000115062 ENSMUST00000226216 4930544F09Rik antisense Interval_92667 chr2 62309349 62309563 + 0 NA intron (ENSMUSG00000026904.17, intron 23 of 26) protein_coding-intron (ENSMUSG00000026904.17, intron 22 of 24) -7934 ENSMUSG00000026904.17 ENSMUSG00000026904 ENSMUST00000156534 Slc4a10 protein_coding Interval_82056 chr18 67401321 67402057 + 0 NA TTS (ENSMUSG00000001473.7) protein_coding-TTS (ENSMUSG00000001473.7) 9422 ENSMUSG00000001473.7 ENSMUSG00000001473 ENSMUST00000236667 Tubb6 protein_coding Interval_82497 chr18 74632824 74633215 + 0 NA promoter-TSS (ENSMUSG00000025885.18) protein_coding-promoter-TSS (ENSMUSG00000025885.18) -80600 ENSMUSG00000025885.18 ENSMUSG00000025885 ENSMUST00000154986 Myo5b protein_coding Interval_45262 chr13 53667371 53668196 + 0 NA Intergenic Intergenic 19198 ENSMUSG00000113329.1 ENSMUSG00000113329 ENSMUST00000221718 4930555G21Rik lincRNA Interval_15796 chr10 56997779 56998320 + 0 NA Intergenic Intergenic -15817 ENSMUSG00000112327.1 ENSMUSG00000112327 ENSMUST00000220080 Gm36827 lincRNA Interval_25751 chr11 51470192 51471331 + 0 NA intron (ENSMUSG00000063564.13, intron 2 of 28) protein_coding-intron (ENSMUSG00000063564.13, intron 2 of 28) -103671 ENSMUSG00000063564.13 ENSMUSG00000063564 ENSMUST00000151098 Col23a1 protein_coding Interval_153574 chr8 3482503 3482863 + 0 NA intron (ENSMUSG00000040340.13, intron 3 of 7) protein_coding-intron (ENSMUSG00000040340.13, intron 4 of 8) 6834 ENSMUSG00000040340.13 ENSMUSG00000040340 ENSMUST00000161680 Tex45 protein_coding Interval_113463 chr4 55170200 55170500 + 0 NA intron (ENSMUSG00000087614.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000087614.1, intron 1 of 2) 7342 ENSMUSG00000081177.1 ENSMUSG00000081177 ENSMUST00000118033 Gm12509 processed_pseudogene Interval_52160 chr14 37393560 37394379 + 0 NA Intergenic Intergenic 43651 ENSMUSG00000077786.1 ENSMUSG00000077786 ENSMUST00000104598 Gm23909 snoRNA Interval_2552 chr1 40303086 40304652 + 0 NA intron (ENSMUSG00000026072.12, intron 8 of 10) protein_coding-intron (ENSMUSG00000026072.12, intron 8 of 10) -20821 ENSMUSG00000070942.8 ENSMUSG00000070942 ENSMUST00000193388 Il1rl2 protein_coding Interval_81854 chr18 65332561 65332785 + 0 NA intron (ENSMUSG00000032845.16, intron 1 of 9) protein_coding-intron (ENSMUSG00000032845.16, intron 4 of 12) -10148 ENSMUSG00000117971.1 ENSMUSG00000117971 ENSMUST00000237943 Gm50220 processed_pseudogene Interval_83309 chr18 84077350 84077951 + 0 NA intron (ENSMUSG00000046982.11, intron 1 of 1) protein_coding-intron (ENSMUSG00000046982.11, intron 1 of 1) 10056 ENSMUSG00000046982.11 ENSMUSG00000046982 ENSMUST00000237918 Tshz1 protein_coding Interval_79774 chr18 35060664 35060899 + 0 NA intron (ENSMUSG00000118380.1, intron 3 of 3) processed_transcript-intron (ENSMUSG00000118380.1, intron 4 of 5) 26842 ENSMUSG00000117727.1 ENSMUSG00000117727 ENSMUST00000238134 Gm3587 lincRNA Interval_67165 chr16 44100374 44101753 + 0 NA intron (ENSMUSG00000052459.13, intron 10 of 11) protein_coding-intron (ENSMUSG00000052459.13, intron 10 of 14) 38642 ENSMUSG00000052459.13 ENSMUSG00000052459 ENSMUST00000147025 Atp6v1a protein_coding Interval_162702 chr9 7913756 7915175 + 0 NA Intergenic Intergenic -51373 ENSMUSG00000092185.1 ENSMUSG00000092185 ENSMUST00000174760 Gm20416 processed_transcript Interval_63344 chr15 100460640 100461468 + 0 NA exon (ENSMUSG00000097827.1, exon 2 of 2) bidirectional_promoter_lncRNA-exon (ENSMUSG00000097827.1, exon 2 of 2) 7637 ENSMUSG00000097827.1 ENSMUSG00000097827 ENSMUST00000180953 5330439K02Rik bidirectional_promoter_lncRNA Interval_82589 chr18 75327974 75328362 + 0 NA Intergenic Intergenic -30851 ENSMUSG00000102047.1 ENSMUSG00000102047 ENSMUST00000186356 2010010A06Rik transcribed_processed_pseudogene Interval_86985 chr19 45343217 45343458 + 0 NA Intergenic Intergenic 20312 ENSMUSG00000114673.1 ENSMUSG00000114673 ENSMUST00000223748 1700016H03Rik antisense Interval_11150 chr1 179676936 179677726 + 0 NA exon (ENSMUSG00000038936.13, exon 2 of 2) protein_coding-exon (ENSMUSG00000038936.13, exon 2 of 2) -6514 ENSMUSG00000038936.13 ENSMUSG00000038936 ENSMUST00000192611 Sccpdh protein_coding Interval_173325 chrX 79670939 79672130 + 0 NA promoter-TSS (ENSMUSG00000046942.17) protein_coding-promoter-TSS (ENSMUSG00000046942.17) -35952 ENSMUSG00000046942.17 ENSMUSG00000046942 ENSMUST00000052283 Mageb16 protein_coding Interval_5201 chr1 86430063 86430426 + 0 NA Intergenic Intergenic 3915 ENSMUSG00000036574.5 ENSMUSG00000036574 ENSMUST00000046004 Tex44 protein_coding Interval_25029 chr11 43384949 43385852 + 0 NA promoter-TSS (ENSMUSG00000084889.1) lincRNA-promoter-TSS (ENSMUSG00000084889.1) -82 ENSMUSG00000084889.1 ENSMUSG00000084889 ENSMUST00000153791 Gm12148 lincRNA Interval_160921 chr8 115046530 115046732 + 0 NA intron (ENSMUSG00000004637.15, intron 8 of 8) protein_coding-intron (ENSMUSG00000004637.15, intron 8 of 8) 6282 ENSMUSG00000088428.1 ENSMUSG00000088428 ENSMUST00000157803 Gm22556 rRNA Interval_95619 chr2 112891137 112891456 + 0 NA intron (ENSMUSG00000057378.15, intron 18 of 103) protein_coding-intron (ENSMUSG00000057378.15, intron 18 of 102) -234748 ENSMUSG00000057378.15 ENSMUSG00000057378 ENSMUST00000208135 Ryr3 protein_coding Interval_16563 chr10 63723274 63723532 + 0 NA intron (ENSMUSG00000060843.11, intron 5 of 17) protein_coding-intron (ENSMUSG00000060843.11, intron 4 of 16) -97652 ENSMUSG00000060843.11 ENSMUSG00000060843 ENSMUST00000135474 Ctnna3 protein_coding Interval_1461 chr1 23754549 23755127 + 0 NA Intergenic Intergenic -6915 ENSMUSG00000026156.8 ENSMUSG00000026156 ENSMUST00000140583 B3gat2 protein_coding Interval_26962 chr11 61883644 61883954 + 0 NA intron (ENSMUSG00000047804.15, intron 12 of 14) protein_coding-intron (ENSMUSG00000047804.15, intron 12 of 14) -15741 ENSMUSG00000072847.4 ENSMUSG00000072847 ENSMUST00000148413 A530017D24Rik lincRNA Interval_77809 chr18 3863700 3864377 + 0 NA Intergenic Intergenic 3930 ENSMUSG00000084719.1 ENSMUSG00000084719 ENSMUST00000122770 Gm24632 misc_RNA Interval_48382 chr13 98636532 98637284 + 0 NA exon (ENSMUSG00000046082.4, exon 1 of 2) protein_coding-exon (ENSMUSG00000046082.4, exon 1 of 2) 502 ENSMUSG00000046082.4 ENSMUSG00000046082 ENSMUST00000050389 Tmem174 protein_coding Interval_84884 chr19 18606867 18609722 + 0 NA intron (ENSMUSG00000024725.13, intron 1 of 10) protein_coding-intron (ENSMUSG00000024725.13, intron 1 of 9) 23495 ENSMUSG00000024725.13 ENSMUSG00000024725 ENSMUST00000138860 Ostf1 protein_coding Interval_144008 chr7 18937698 18938461 + 0 NA intron (ENSMUSG00000030411.16, intron 1 of 3) protein_coding-intron (ENSMUSG00000030411.16, intron 1 of 3) 12191 ENSMUSG00000030411.16 ENSMUSG00000030411 ENSMUST00000220302 Nova2 protein_coding Interval_67420 chr16 48541601 48542785 + 0 NA intron (ENSMUSG00000022652.7, intron 7 of 8) protein_coding-intron (ENSMUSG00000022652.7, intron 14 of 26) 62561 ENSMUSG00000022652.7 ENSMUSG00000022652 ENSMUST00000232195 Morc1 protein_coding Interval_117716 chr4 125735379 125735818 + 0 NA Intergenic Intergenic 186819 ENSMUSG00000085562.7 ENSMUSG00000085562 ENSMUST00000144539 2610028E06Rik lincRNA Interval_147075 chr7 60846651 60847441 + 0 NA Intergenic Intergenic 75857 ENSMUSG00000109121.1 ENSMUSG00000109121 ENSMUST00000207994 Gm44644 lincRNA Interval_73338 chr17 36278533 36279273 + 0 NA Intergenic Intergenic 7587 ENSMUSG00000023083.7 ENSMUSG00000023083 ENSMUST00000023845 H2-M10.2 protein_coding Interval_92431 chr2 59683511 59683822 + 0 NA intron (ENSMUSG00000035168.16, intron 1 of 25) protein_coding-intron (ENSMUSG00000035168.16, intron 2 of 26) -118982 ENSMUSG00000081157.1 ENSMUSG00000081157 ENSMUST00000118837 Gm13552 processed_pseudogene Interval_6480 chr1 111626053 111626896 + 0 NA Intergenic Intergenic -179829 ENSMUSG00000101253.1 ENSMUSG00000101253 ENSMUST00000189363 Gm29088 lincRNA Interval_140797 chr6 121411108 121411578 + 0 NA intron (ENSMUSG00000040797.16, intron 3 of 12) protein_coding-intron (ENSMUSG00000040797.16, intron 4 of 13) 54523 ENSMUSG00000030109.15 ENSMUSG00000030109 ENSMUST00000170339 Slc6a12 protein_coding Interval_125813 chr5 74476401 74476594 + 0 NA intron (ENSMUSG00000062110.14, intron 3 of 4) protein_coding-intron (ENSMUSG00000062110.14, intron 3 of 8) -45392 ENSMUSG00000106992.1 ENSMUSG00000106992 ENSMUST00000202001 Gm43167 TEC Interval_75816 chr17 71605791 71606477 + 0 NA Intergenic Intergenic 2808 ENSMUSG00000117275.1 ENSMUSG00000117275 ENSMUST00000232941 Gm50047 processed_pseudogene Interval_98751 chr2 154692892 154694024 + 0 NA intron (ENSMUSG00000038467.15, intron 4 of 4) protein_coding-intron (ENSMUSG00000038467.15, intron 4 of 4) -10351 ENSMUSG00000082064.3 ENSMUSG00000082064 ENSMUST00000119057 Rpl5-ps2 processed_pseudogene Interval_174518 chrX 155337883 155338805 + 0 NA exon (ENSMUSG00000025289.15, exon 1 of 7) protein_coding-exon (ENSMUSG00000025289.15, exon 1 of 7) 2410 ENSMUSG00000025289.15 ENSMUSG00000025289 ENSMUST00000123915 Prdx4 protein_coding Interval_67419 chr16 48519483 48520123 + 0 NA intron (ENSMUSG00000022652.7, intron 7 of 8) protein_coding-intron (ENSMUSG00000022652.7, intron 14 of 26) 40171 ENSMUSG00000022652.7 ENSMUSG00000022652 ENSMUST00000232195 Morc1 protein_coding Interval_63075 chr15 98977626 98978804 + 0 NA Intergenic Intergenic -5133 ENSMUSG00000097587.2 ENSMUSG00000097587 ENSMUST00000180490 4930578M01Rik processed_transcript Interval_37106 chr12 58445106 58446131 + 0 NA Intergenic Intergenic -176328 ENSMUSG00000045930.3 ENSMUSG00000045930 ENSMUST00000062254 Clec14a protein_coding Interval_11669 chr1 184472438 184472690 + 0 NA Intergenic Intergenic 29584 ENSMUSG00000104419.1 ENSMUSG00000104419 ENSMUST00000191770 2900092O11Rik TEC Interval_144092 chr7 19393419 19394873 + 0 NA TTS (ENSMUSG00000040714.14) protein_coding-TTS (ENSMUSG00000040714.14) 485 ENSMUSG00000030400.17 ENSMUSG00000030400 ENSMUST00000145039 Ercc2 protein_coding Interval_156970 chr8 63116856 63117152 + 0 NA intron (ENSMUSG00000054162.15, intron 4 of 5) protein_coding-intron (ENSMUSG00000054162.15, intron 3 of 10) -8197 ENSMUSG00000088419.1 ENSMUSG00000088419 ENSMUST00000157794 Gm24236 snoRNA Interval_72462 chr17 29963368 29964516 + 0 NA intron (ENSMUSG00000043557.16, intron 1 of 20) protein_coding-intron (ENSMUSG00000043557.16, intron 1 of 20) -15378 ENSMUSG00000117528.1 ENSMUSG00000117528 ENSMUST00000234695 Gm50017 lincRNA Interval_47991 chr13 94896565 94896817 + 0 NA Intergenic Intergenic 14091 ENSMUSG00000021685.11 ENSMUSG00000021685 ENSMUST00000184985 Otp protein_coding Interval_148405 chr7 81062680 81064089 + 0 NA intron (ENSMUSG00000085194.1, intron 1 of 1) protein_coding-intron (ENSMUSG00000038763.12, intron 1 of 13) 4271 ENSMUSG00000085194.1 ENSMUSG00000085194 ENSMUST00000148597 Platr32 sense_intronic Interval_98862 chr2 155626977 155627580 + 0 NA intron (ENSMUSG00000074652.3, intron 24 of 41) protein_coding-intron (ENSMUSG00000074652.3, intron 24 of 41) 4398 ENSMUSG00000076312.1 ENSMUSG00000076312 ENSMUST00000102357 Mir499 miRNA Interval_28400 chr11 75662154 75662393 + 0 NA exon (ENSMUSG00000017774.19, exon 13 of 32) protein_coding-exon (ENSMUSG00000017774.19, exon 13 of 32) -8003 ENSMUSG00000017774.19 ENSMUSG00000017774 ENSMUST00000155027 Myo1c protein_coding Interval_173254 chrX 75416049 75417162 + 0 NA promoter-TSS (ENSMUSG00000031200.16) protein_coding-promoter-TSS (ENSMUSG00000031200.16) -21 ENSMUSG00000090110.8 ENSMUSG00000090110 ENSMUST00000120286 Cmc4 protein_coding Interval_78865 chr18 21038765 21039208 + 0 NA Intergenic Intergenic -33358 ENSMUSG00000024313.8 ENSMUSG00000024313 ENSMUST00000082235 Mep1b protein_coding Interval_124189 chr5 39620780 39621057 + 0 NA intron (ENSMUSG00000051022.7, intron 2 of 2) protein_coding-intron (ENSMUSG00000051022.7, intron 1 of 1) -10574 ENSMUSG00000107134.1 ENSMUSG00000107134 ENSMUST00000200697 Gm42528 TEC Interval_124132 chr5 38570919 38571534 + 0 NA Intergenic Intergenic -3805 ENSMUSG00000086422.1 ENSMUSG00000086422 ENSMUST00000147322 4930421P07Rik processed_pseudogene Interval_2680 chr1 43284178 43285263 + 0 NA intron (ENSMUSG00000099576.1, intron 2 of 5) lincRNA-intron (ENSMUSG00000099576.1, intron 2 of 5) 14037 ENSMUSG00000099694.1 ENSMUSG00000099694 ENSMUST00000187749 Gm29610 processed_pseudogene Interval_10943 chr1 177408862 177409072 + 0 NA Intergenic Intergenic 20117 ENSMUSG00000097892.2 ENSMUSG00000097892 ENSMUST00000180591 Gm26801 antisense Interval_97270 chr2 132802884 132803637 + 0 NA TTS (ENSMUSG00000037376.14) protein_coding-TTS (ENSMUSG00000037376.14) 7375 ENSMUSG00000037376.14 ENSMUSG00000037376 ENSMUST00000127855 Trmt6 protein_coding Interval_152095 chr7 129235392 129236025 + 0 NA Intergenic Intergenic -21339 ENSMUSG00000070366.5 ENSMUSG00000070366 ENSMUST00000205896 Plpp4 protein_coding Interval_130014 chr5 123708733 123708956 + 0 NA promoter-TSS (ENSMUSG00000029427.11) protein_coding-promoter-TSS (ENSMUSG00000029427.11) 11930 ENSMUSG00000029427.11 ENSMUSG00000029427 ENSMUST00000200503 Zcchc8 protein_coding Interval_17930 chr10 80876143 80876954 + 0 NA intron (ENSMUSG00000059406.8, intron 1 of 18) protein_coding-intron (ENSMUSG00000059406.8, intron 1 of 18) 4700 ENSMUSG00000059406.8 ENSMUSG00000059406 ENSMUST00000105333 Tmprss9 protein_coding Interval_9135 chr1 153937162 153937599 + 0 NA Intergenic Intergenic -1846 ENSMUSG00000100014.1 ENSMUSG00000100014 ENSMUST00000185385 Gm29290 lincRNA Interval_82738 chr18 76315729 76316604 + 0 NA Intergenic Intergenic -5658 ENSMUSG00000117816.1 ENSMUSG00000117816 ENSMUST00000235901 Gm50360 processed_pseudogene Interval_10578 chr1 171990276 171990466 + 0 NA Intergenic Intergenic 36340 ENSMUSG00000026556.15 ENSMUSG00000026556 ENSMUST00000138714 Vangl2 protein_coding Interval_165695 chr9 51041436 51042330 + 0 NA Intergenic Intergenic -19039 ENSMUSG00000032056.10 ENSMUSG00000032056 ENSMUST00000213117 Btg4 protein_coding Interval_152056 chr7 128664355 128664808 + 0 NA intron (ENSMUSG00000042105.18, intron 3 of 4) protein_coding-intron (ENSMUSG00000042105.18, intron 6 of 19) -23908 ENSMUSG00000042105.18 ENSMUSG00000042105 ENSMUST00000118605 Inpp5f protein_coding Interval_39090 chr12 84976656 84976949 + 0 NA intron (ENSMUSG00000021243.14, intron 4 of 7) protein_coding-intron (ENSMUSG00000021243.14, intron 4 of 7) -3408 ENSMUSG00000021243.14 ENSMUSG00000021243 ENSMUST00000172241 Fcf1 protein_coding Interval_49874 chr13 117458740 117459016 + 0 NA exon (ENSMUSG00000114358.1, exon 1 of 1) processed_pseudogene-exon (ENSMUSG00000114358.1, exon 1 of 1) 197 ENSMUSG00000114358.1 ENSMUSG00000114358 ENSMUST00000223786 Gm5200 processed_pseudogene Interval_143722 chr7 15927811 15928119 + 0 NA Intergenic Intergenic -5563 ENSMUSG00000041571.9 ENSMUSG00000041571 ENSMUST00000044355 Selenow protein_coding Interval_71679 chr17 25373830 25374221 + 0 NA TTS (ENSMUSG00000024112.16) protein_coding-TTS (ENSMUSG00000024112.16) 3472 ENSMUSG00000033200.16 ENSMUSG00000033200 ENSMUST00000160920 Tpsg1 protein_coding Interval_9272 chr1 155721437 155722948 + 0 NA intron (ENSMUSG00000026468.14, intron 2 of 4) protein_coding-intron (ENSMUSG00000026468.14, intron 2 of 5) 29492 ENSMUSG00000026468.14 ENSMUSG00000026468 ENSMUST00000195275 Lhx4 protein_coding Interval_16759 chr10 67997905 67998672 + 0 NA intron (ENSMUSG00000037846.18, intron 3 of 14) protein_coding-intron (ENSMUSG00000037846.18, intron 3 of 14) 18590 ENSMUSG00000037846.18 ENSMUSG00000037846 ENSMUST00000123147 Rtkn2 protein_coding Interval_123353 chr5 31633993 31635428 + 0 NA intron (ENSMUSG00000106918.3, intron 3 of 4) protein_coding-intron (ENSMUSG00000029136.9, intron 7 of 7) 20738 ENSMUSG00000105617.4 ENSMUSG00000105617 ENSMUST00000202033 Gm43809 processed_transcript Interval_71317 chr17 22174567 22175658 + 0 NA Intergenic Intergenic -8922 ENSMUSG00000063383.5 ENSMUSG00000063383 ENSMUST00000080249 Zfp947 protein_coding Interval_66640 chr16 35802014 35802401 + 0 NA exon (ENSMUSG00000022849.5, exon 3 of 3) protein_coding-exon (ENSMUSG00000022849.5, exon 3 of 3) 6739 ENSMUSG00000097914.1 ENSMUSG00000097914 ENSMUST00000180485 Gm26838 antisense Interval_158143 chr8 79158242 79158782 + 0 NA intron (ENSMUSG00000071064.15, intron 8 of 13) protein_coding-intron (ENSMUSG00000071064.15, intron 8 of 14) -67418 ENSMUSG00000110388.1 ENSMUSG00000110388 ENSMUST00000211572 Gm30329 antisense Interval_114607 chr4 83093986 83094460 + 0 NA Intergenic Intergenic 15712 ENSMUSG00000089409.1 ENSMUSG00000089409 ENSMUST00000158784 Gm24884 snoRNA Interval_158191 chr8 79669917 79670607 + 0 NA intron (ENSMUSG00000036990.13, intron 19 of 20) protein_coding-intron (ENSMUSG00000036990.13, intron 5 of 5) 9178 ENSMUSG00000036990.13 ENSMUSG00000036990 ENSMUST00000172614 Otud4 protein_coding Interval_26392 chr11 57582123 57584927 + 0 NA Intergenic Intergenic 11013 ENSMUSG00000086028.1 ENSMUSG00000086028 ENSMUST00000128521 Gm12243 lincRNA Interval_156843 chr8 61014815 61015022 + 0 NA intron (ENSMUSG00000031644.19, intron 4 of 34) protein_coding-intron (ENSMUSG00000031644.19, intron 4 of 32) -9213 ENSMUSG00000110046.1 ENSMUSG00000110046 ENSMUST00000210310 Gm45484 TEC Interval_17196 chr10 74848172 74848931 + 0 NA Intergenic Intergenic 14865 ENSMUSG00000072407.4 ENSMUSG00000072407 ENSMUST00000097166 Gm6419 processed_pseudogene Interval_94750 chr2 93992925 93993438 + 0 NA intron (ENSMUSG00000040174.14, intron 8 of 9) protein_coding-intron (ENSMUSG00000040174.14, intron 8 of 9) 3173 ENSMUSG00000098004.1 ENSMUSG00000098004 ENSMUST00000183110 Gm27027 protein_coding Interval_122432 chr5 22565537 22566362 + 0 NA intron (ENSMUSG00000097207.7, intron 2 of 5) lincRNA-intron (ENSMUSG00000097207.7, intron 2 of 4) 1992 ENSMUSG00000105156.1 ENSMUSG00000105156 ENSMUST00000198791 Gm9057 processed_pseudogene Interval_33887 chr11 119205900 119206777 + 0 NA intron (ENSMUSG00000039976.4, intron 3 of 11) protein_coding-intron (ENSMUSG00000039976.4, intron 3 of 11) -13822 ENSMUSG00000087404.1 ENSMUSG00000087404 ENSMUST00000143291 Gm11752 lincRNA Interval_121674 chr5 4964022 4964916 + 0 NA intron (ENSMUSG00000028926.15, intron 2 of 3) protein_coding-intron (ENSMUSG00000028926.15, intron 10 of 14) 20768 ENSMUSG00000106272.1 ENSMUSG00000106272 ENSMUST00000197782 Gm22897 scaRNA Interval_23298 chr11 21250965 21251594 + 0 NA intron (ENSMUSG00000020128.15, intron 1 of 22) protein_coding-intron (ENSMUSG00000020128.15, intron 1 of 22) -1719 ENSMUSG00000089155.1 ENSMUSG00000089155 ENSMUST00000158530 Gm23582 snoRNA Interval_111176 chr4 14087228 14087683 + 0 NA Intergenic Intergenic -7515 ENSMUSG00000077701.1 ENSMUSG00000077701 ENSMUST00000104513 Gm24068 snoRNA Interval_105146 chr3 82662815 82663754 + 0 NA promoter-TSS (ENSMUSG00000102629.1) processed_transcript-promoter-TSS (ENSMUSG00000102629.1) 1616 ENSMUSG00000102629.1 ENSMUSG00000102629 ENSMUST00000193554 Gm29999 processed_transcript Interval_8688 chr1 147951757 147952146 + 0 NA Intergenic Intergenic -38134 ENSMUSG00000101973.1 ENSMUSG00000101973 ENSMUST00000190402 Gm29516 processed_pseudogene Interval_106580 chr3 97500216 97500851 + 0 NA Intergenic Intergenic -78513 ENSMUSG00000051392.5 ENSMUSG00000051392 ENSMUST00000060912 Olfr1402 protein_coding Interval_54858 chr14 75870160 75870932 + 0 NA Intergenic Intergenic 22641 ENSMUSG00000065147.1 ENSMUSG00000065147 ENSMUST00000083213 Snora31 snoRNA Interval_154703 chr8 22705976 22707032 + 0 NA promoter-TSS (ENSMUSG00000031537.15) protein_coding-promoter-TSS (ENSMUSG00000031537.15) 36 ENSMUSG00000031537.15 ENSMUSG00000031537 ENSMUST00000150214 Ikbkb protein_coding Interval_168030 chr9 75480667 75480884 + 0 NA intron (ENSMUSG00000109032.1, intron 3 of 3) transcribed_unprocessed_pseudogene-intron (ENSMUSG00000109032.1, intron 6 of 8) -2076 ENSMUSG00000109032.1 ENSMUSG00000109032 ENSMUST00000209180 Gm7972 transcribed_unprocessed_pseudogene Interval_55010 chr14 76857561 76858680 + 0 NA Intergenic Intergenic -3451 ENSMUSG00000115596.1 ENSMUSG00000115596 ENSMUST00000227341 Gm48969 lincRNA Interval_6506 chr1 113352334 113352523 + 0 NA Intergenic Intergenic 63088 ENSMUSG00000101453.1 ENSMUSG00000101453 ENSMUST00000190085 Gm28189 lincRNA Interval_3061 chr1 52798747 52799748 + 0 NA intron (ENSMUSG00000026102.9, intron 2 of 3) protein_coding-intron (ENSMUSG00000026102.9, intron 2 of 5) 241 ENSMUSG00000026102.9 ENSMUSG00000026102 ENSMUST00000159725 Inpp1 protein_coding Interval_144967 chr7 29158266 29158651 + 0 NA TTS (ENSMUSG00000037239.8) protein_coding-TTS (ENSMUSG00000037239.8) -2224 ENSMUSG00000030590.15 ENSMUSG00000030590 ENSMUST00000138084 Fam98c protein_coding Interval_26871 chr11 61212271 61213960 + 0 NA TTS (ENSMUSG00000019102.10) protein_coding-TTS (ENSMUSG00000019102.10) 5578 ENSMUSG00000019102.10 ENSMUSG00000019102 ENSMUST00000019246 Aldh3a1 protein_coding Interval_16743 chr10 67871755 67872294 + 0 NA Intergenic Intergenic 40411 ENSMUSG00000037855.15 ENSMUSG00000037855 ENSMUST00000138543 Zfp365 protein_coding Interval_103202 chr3 36632125 36632345 + 0 NA intron (ENSMUSG00000027716.13, intron 10 of 11) protein_coding-intron (ENSMUSG00000027716.13, intron 10 of 11) -54950 ENSMUSG00000037325.10 ENSMUSG00000037325 ENSMUST00000142333 Bbs7 protein_coding Interval_136653 chr6 57075925 57076135 + 0 NA Intergenic Intergenic 9243 ENSMUSG00000091541.2 ENSMUSG00000091541 ENSMUST00000171186 Vmn1r9 protein_coding Interval_41171 chr12 111607546 111608369 + 0 NA intron (ENSMUSG00000007411.16, intron 2 of 6) protein_coding-intron (ENSMUSG00000007411.16, intron 3 of 15) 3446 ENSMUSG00000007411.16 ENSMUSG00000007411 ENSMUST00000221841 Mark3 protein_coding Interval_52772 chr14 49704205 49705732 + 0 NA intron (ENSMUSG00000036242.15, intron 5 of 7) protein_coding-intron (ENSMUSG00000036242.15, intron 5 of 7) 8654 ENSMUSG00000082967.2 ENSMUSG00000082967 ENSMUST00000115992 Gm16082 processed_pseudogene Interval_151017 chr7 117754236 117754454 + 0 NA Intergenic Intergenic -22449 ENSMUSG00000088116.1 ENSMUSG00000088116 ENSMUST00000157491 Gm24063 miRNA Interval_100 GL456221.1 138829 140916 + 0 NA NA NA NA NA Interval_82207 chr18 69086283 69087262 + 0 NA Intergenic Intergenic -64499 ENSMUSG00000098366.1 ENSMUSG00000098366 ENSMUST00000184434 Mir145b miRNA Interval_170395 chr9 107643904 107646003 + 0 NA Intergenic Intergenic -12414 ENSMUSG00000102324.1 ENSMUSG00000102324 ENSMUST00000195284 Gm19721 TEC Interval_86003 chr19 34859419 34861197 + 0 NA intron (ENSMUSG00000033610.16, intron 1 of 6) protein_coding-intron (ENSMUSG00000033610.16, intron 1 of 6) 17545 ENSMUSG00000033610.16 ENSMUSG00000033610 ENSMUST00000237577 Pank1 protein_coding Interval_145365 chr7 34251996 34252226 + 0 NA promoter-TSS (ENSMUSG00000108737.1) TEC-promoter-TSS (ENSMUSG00000108737.1) -756 ENSMUSG00000108737.1 ENSMUSG00000108737 ENSMUST00000207005 BC060293 TEC Interval_124972 chr5 62851828 62852074 + 0 NA intron (ENSMUSG00000090326.2, intron 8 of 9) protein_coding-intron (ENSMUSG00000090326.2, intron 7 of 8) 40277 ENSMUSG00000090326.2 ENSMUSG00000090326 ENSMUST00000170704 Dthd1 protein_coding Interval_27909 chr11 70776497 70778323 + 0 NA Intergenic Intergenic 13201 ENSMUSG00000043602.5 ENSMUSG00000043602 ENSMUST00000060444 Zfp3 protein_coding Interval_154543 chr8 19237750 19238778 + 0 NA Intergenic Intergenic -1652 ENSMUSG00000071169.1 ENSMUSG00000071169 ENSMUST00000095436 Defb46 protein_coding Interval_1103 chr1 15754830 15755301 + 0 NA Intergenic Intergenic -2767 ENSMUSG00000077377.1 ENSMUSG00000077377 ENSMUST00000104189 Gm25168 snoRNA Interval_74792 chr17 56561989 56562216 + 0 NA TTS (ENSMUSG00000042625.16) protein_coding-TTS (ENSMUSG00000042625.16) -7715 ENSMUSG00000110218.1 ENSMUSG00000110218 ENSMUST00000209718 Gm20219 protein_coding Interval_113770 chr4 58475849 58476506 + 0 NA intron (ENSMUSG00000038668.14, intron 3 of 3) protein_coding-intron (ENSMUSG00000038668.14, intron 3 of 3) 7648 ENSMUSG00000083834.1 ENSMUSG00000083834 ENSMUST00000119701 Gm12577 processed_pseudogene Interval_84962 chr19 20389865 20390909 + 0 NA intron (ENSMUSG00000024659.15, intron 1 of 13) protein_coding-intron (ENSMUSG00000024659.15, intron 1 of 12) 286 ENSMUSG00000024659.15 ENSMUSG00000024659 ENSMUST00000164587 Anxa1 protein_coding Interval_139481 chr6 100452024 100453644 + 0 NA Intergenic Intergenic 41980 ENSMUSG00000087929.1 ENSMUSG00000087929 ENSMUST00000157304 Gm23234 snoRNA Interval_174753 chrX 165424236 165424953 + 0 NA Intergenic Intergenic -97201 ENSMUSG00000018589.8 ENSMUSG00000018589 ENSMUST00000058787 Glra2 protein_coding Interval_124299 chr5 43745138 43745364 + 0 NA exon (ENSMUSG00000039753.16, exon 11 of 11) protein_coding-exon (ENSMUSG00000039753.16, exon 11 of 11) 9020 ENSMUSG00000104728.1 ENSMUSG00000104728 ENSMUST00000196543 Gm42462 TEC Interval_50393 chr14 12388297 12389573 + 0 NA intron (ENSMUSG00000054423.14, intron 27 of 28) protein_coding-intron (ENSMUSG00000054423.14, intron 27 of 28) 13295 ENSMUSG00000114624.1 ENSMUSG00000114624 ENSMUST00000225907 Gm48267 TEC Interval_131738 chr5 139574668 139575257 + 0 NA Intergenic Intergenic 31064 ENSMUSG00000029546.12 ENSMUSG00000029546 ENSMUST00000174792 Uncx protein_coding Interval_49654 chr13 113821670 113822194 + 0 NA intron (ENSMUSG00000042348.10, intron 1 of 3) protein_coding-intron (ENSMUSG00000042348.10, intron 1 of 4) 27339 ENSMUSG00000042348.10 ENSMUSG00000042348 ENSMUST00000224068 Arl15 protein_coding Interval_14764 chr10 39671927 39672642 + 0 NA intron (ENSMUSG00000087177.7, intron 2 of 3) antisense-intron (ENSMUSG00000087177.7, intron 1 of 3) 10195 ENSMUSG00000111847.1 ENSMUSG00000111847 ENSMUST00000214635 Gm8899 processed_pseudogene Interval_78766 chr18 20516837 20517157 + 0 NA intron (ENSMUSG00000056632.8, intron 1 of 18) protein_coding-intron (ENSMUSG00000056632.8, intron 1 of 15) 6714 ENSMUSG00000056632.8 ENSMUSG00000056632 ENSMUST00000234945 Dsg3 protein_coding Interval_85774 chr19 30843286 30843520 + 0 NA intron (ENSMUSG00000052920.16, intron 5 of 17) protein_coding-intron (ENSMUSG00000052920.16, intron 5 of 17) -112821 ENSMUSG00000052920.16 ENSMUSG00000052920 ENSMUST00000182685 Prkg1 protein_coding Interval_41057 chr12 110849953 110851148 + 0 NA exon (ENSMUSG00000021271.5, exon 1 of 8) protein_coding-exon (ENSMUSG00000021271.5, exon 1 of 8) 244 ENSMUSG00000021271.5 ENSMUSG00000021271 ENSMUST00000222460 Zfp839 protein_coding Interval_40203 chr12 102535185 102535398 + 0 NA Intergenic Intergenic -22777 ENSMUSG00000021194.6 ENSMUSG00000021194 ENSMUST00000223100 Chga protein_coding Interval_83239 chr18 82938978 82940254 + 0 NA intron (ENSMUSG00000058881.13, intron 1 of 1) protein_coding-intron (ENSMUSG00000058881.13, intron 1 of 5) -19056 ENSMUSG00000118339.1 ENSMUSG00000118339 ENSMUST00000237056 4930592I03Rik processed_transcript Interval_60091 chr15 65268097 65268713 + 0 NA Intergenic Intergenic -67843 ENSMUSG00000115066.1 ENSMUSG00000115066 ENSMUST00000227626 Gm49242 processed_pseudogene Interval_25875 chr11 52293891 52294552 + 0 NA Intergenic Intergenic 18166 ENSMUSG00000086395.1 ENSMUSG00000086395 ENSMUST00000150973 A630014C17Rik antisense Interval_36278 chr12 40584722 40585702 + 0 NA intron (ENSMUSG00000035954.10, intron 1 of 5) protein_coding-intron (ENSMUSG00000035954.10, intron 1 of 52) 139129 ENSMUSG00000035954.10 ENSMUSG00000035954 ENSMUST00000220850 Dock4 protein_coding Interval_78813 chr18 20762564 20763091 + 0 NA Intergenic Intergenic -16423 ENSMUSG00000056124.5 ENSMUSG00000056124 ENSMUST00000070080 B4galt6 protein_coding Interval_120959 chr4 151933190 151934533 + 0 NA intron (ENSMUSG00000039768.16, intron 1 of 8) protein_coding-intron (ENSMUSG00000039768.16, intron 1 of 15) -17447 ENSMUSG00000104142.1 ENSMUSG00000104142 ENSMUST00000191938 Gm37141 TEC Interval_158135 chr8 79084306 79084632 + 0 NA intron (ENSMUSG00000071064.15, intron 4 of 13) protein_coding-intron (ENSMUSG00000071064.15, intron 4 of 14) 55882 ENSMUSG00000071064.15 ENSMUSG00000071064 ENSMUST00000129613 Zfp827 protein_coding Interval_82146 chr18 68033398 68035440 + 0 NA intron (ENSMUSG00000024544.9, intron 1 of 5) protein_coding-intron (ENSMUSG00000024544.9, intron 1 of 5) 83955 ENSMUSG00000117891.1 ENSMUSG00000117891 ENSMUST00000236198 Gm41764 antisense Interval_11545 chr1 182591080 182592514 + 0 NA intron (ENSMUSG00000038599.14, intron 2 of 9) protein_coding-intron (ENSMUSG00000038599.14, intron 2 of 20) 26790 ENSMUSG00000038599.14 ENSMUSG00000038599 ENSMUST00000192671 Capn8 protein_coding Interval_120243 chr4 144816552 144817351 + 0 NA Intergenic Intergenic 25114 ENSMUSG00000083998.1 ENSMUSG00000083998 ENSMUST00000117259 Prdx2-ps2 processed_pseudogene Interval_78592 chr18 14988742 14989560 + 0 NA promoter-TSS (ENSMUSG00000036225.15) protein_coding-promoter-TSS (ENSMUSG00000036225.15) 156 ENSMUSG00000117450.1 ENSMUSG00000117450 ENSMUST00000234445 4933424G05Rik antisense Interval_62478 chr15 93346389 93346866 + 0 NA Intergenic Intergenic 1943 ENSMUSG00000088454.1 ENSMUSG00000088454 ENSMUST00000157829 Gm26371 snRNA Interval_145279 chr7 31115993 31117291 + 0 NA exon (ENSMUSG00000019194.15, exon 6 of 6) protein_coding-exon (ENSMUSG00000019194.15, exon 6 of 6) 10202 ENSMUSG00000019194.15 ENSMUSG00000019194 ENSMUST00000211923 Scn1b protein_coding Interval_135804 chr6 47468783 47468978 + 0 NA intron (ENSMUSG00000029686.15, intron 1 of 1) protein_coding-intron (ENSMUSG00000029686.15, intron 1 of 21) -14560 ENSMUSG00000052241.3 ENSMUSG00000052241 ENSMUST00000064013 A930035D04Rik pseudogene Interval_111633 chr4 24890306 24890633 + 0 NA Intergenic Intergenic -7707 ENSMUSG00000028261.13 ENSMUSG00000028261 ENSMUST00000151249 Ndufaf4 protein_coding Interval_46291 chr13 63422786 63423530 + 0 NA intron (ENSMUSG00000021461.17, intron 1 of 6) protein_coding-intron (ENSMUSG00000021461.17, intron 1 of 15) -8391 ENSMUSG00000113126.1 ENSMUSG00000113126 ENSMUST00000220476 Gm47588 TEC Interval_68180 chr16 66970716 66971578 + 0 NA intron (ENSMUSG00000064115.13, intron 1 of 9) protein_coding-intron (ENSMUSG00000064115.13, intron 1 of 9) -45563 ENSMUSG00000064115.13 ENSMUSG00000064115 ENSMUST00000141282 Cadm2 protein_coding Interval_155347 chr8 32044149 32045269 + 0 NA intron (ENSMUSG00000062991.9, intron 1 of 12) protein_coding-intron (ENSMUSG00000062991.9, intron 1 of 8) -35600 ENSMUSG00000062991.9 ENSMUSG00000062991 ENSMUST00000208206 Nrg1 protein_coding Interval_76392 chr17 79865125 79865569 + 0 NA intron (ENSMUSG00000059811.13, intron 1 of 12) protein_coding-intron (ENSMUSG00000059811.13, intron 2 of 12) -9217 ENSMUSG00000059811.13 ENSMUSG00000059811 ENSMUST00000222243 Atl2 protein_coding Interval_57560 chr15 12354404 12354677 + 0 NA Intergenic Intergenic -32641 ENSMUSG00000097221.1 ENSMUSG00000097221 ENSMUST00000180521 1810049J17Rik protein_coding Interval_19022 chr10 93845803 93847161 + 0 NA exon (ENSMUSG00000020020.8, exon 2 of 6) protein_coding-exon (ENSMUSG00000020020.8, exon 2 of 6) 12664 ENSMUSG00000020020.8 ENSMUSG00000020020 ENSMUST00000216224 Usp44 protein_coding Interval_7332 chr1 129244446 129244733 + 0 NA Intergenic Intergenic -38518 ENSMUSG00000103742.1 ENSMUSG00000103742 ENSMUST00000195110 Gm38240 TEC Interval_31782 chr11 102818645 102821455 + 0 NA promoter-TSS (ENSMUSG00000034520.14) protein_coding-promoter-TSS (ENSMUSG00000034520.14) -9828 ENSMUSG00000064788.1 ENSMUSG00000064788 ENSMUST00000082854 Gm22683 snoRNA Interval_70734 chr17 14035323 14036463 + 0 NA Intergenic Intergenic 23638 ENSMUSG00000101361.2 ENSMUSG00000101361 ENSMUST00000186636 Gm7358 protein_coding Interval_16013 chr10 60124048 60124463 + 0 NA intron (ENSMUSG00000058297.16, intron 5 of 10) protein_coding-intron (ENSMUSG00000058297.16, intron 5 of 10) -2521 ENSMUSG00000105468.1 ENSMUSG00000105468 ENSMUST00000198998 Mir6906 miRNA Interval_148415 chr7 81121202 81121408 + 0 NA intron (ENSMUSG00000025726.11, intron 4 of 17) protein_coding-intron (ENSMUSG00000025726.11, intron 4 of 17) 6455 ENSMUSG00000025726.11 ENSMUSG00000025726 ENSMUST00000119083 Slc28a1 protein_coding Interval_113271 chr4 52845292 52845980 + 0 NA Intergenic Intergenic -2590 ENSMUSG00000110940.1 ENSMUSG00000110940 ENSMUST00000216601 Olfr274-ps1 unprocessed_pseudogene Interval_74005 chr17 45984757 45985278 + 0 NA Intergenic Intergenic 23158 ENSMUSG00000117040.1 ENSMUSG00000117040 ENSMUST00000233512 Gm49805 lincRNA Interval_90558 chr2 31135367 31136207 + 0 NA intron (ENSMUSG00000075415.13, intron 1 of 5) protein_coding-intron (ENSMUSG00000075415.13, intron 1 of 13) 16504 ENSMUSG00000087269.1 ENSMUSG00000087269 ENSMUST00000133550 D330023K18Rik processed_transcript Interval_169400 chr9 96960192 96962781 + 0 NA intron (ENSMUSG00000046997.5, intron 2 of 2) protein_coding-intron (ENSMUSG00000046997.5, intron 2 of 2) 22709 ENSMUSG00000046997.5 ENSMUSG00000046997 ENSMUST00000064445 Spsb4 protein_coding Interval_120440 chr4 148638273 148638495 + 0 NA Intergenic Intergenic -4933 ENSMUSG00000070577.5 ENSMUSG00000070577 ENSMUST00000105698 Gm572 protein_coding Interval_48970 chr13 106363500 106364095 + 0 NA Intergenic Intergenic -112139 ENSMUSG00000114217.1 ENSMUSG00000114217 ENSMUST00000224407 Gm7054 processed_pseudogene Interval_104225 chr3 61083603 61084106 + 0 NA Intergenic Intergenic -80068 ENSMUSG00000102564.1 ENSMUSG00000102564 ENSMUST00000194809 Gm37035 antisense Interval_126015 chr5 76853534 76854038 + 0 NA intron (ENSMUSG00000036377.19, intron 7 of 11) protein_coding-intron (ENSMUSG00000036377.19, intron 4 of 8) 41292 ENSMUSG00000055923.16 ENSMUSG00000055923 ENSMUST00000134805 Aasdh protein_coding Interval_84743 chr19 16156996 16157682 + 0 NA intron (ENSMUSG00000024639.5, intron 1 of 2) protein_coding-intron (ENSMUSG00000024639.5, intron 1 of 6) 7466 ENSMUSG00000057990.4 ENSMUSG00000057990 ENSMUST00000075293 E030024N20Rik processed_pseudogene Interval_148243 chr7 80055943 80056182 + 0 NA intron (ENSMUSG00000048897.15, intron 1 of 1) protein_coding-intron (ENSMUSG00000048897.15, intron 1 of 4) 19185 ENSMUSG00000108714.1 ENSMUSG00000108714 ENSMUST00000206022 Gm21057 antisense Interval_102770 chr3 30917551 30918258 + 0 NA intron (ENSMUSG00000037652.15, intron 10 of 13) protein_coding-intron (ENSMUSG00000037652.15, intron 12 of 16) 39734 ENSMUSG00000102369.1 ENSMUSG00000102369 ENSMUST00000194340 9530022L04Rik TEC Interval_43229 chr13 26004544 26005494 + 0 NA Intergenic Intergenic -18726 ENSMUSG00000086531.2 ENSMUSG00000086531 ENSMUST00000225724 Gm11351 lincRNA Interval_89131 chr2 17097108 17098793 + 0 NA Intergenic Intergenic -71275 ENSMUSG00000081525.1 ENSMUSG00000081525 ENSMUST00000118746 Gm13325 processed_pseudogene Interval_74437 chr17 50524855 50525547 + 0 NA intron (ENSMUSG00000038910.7, intron 1 of 5) protein_coding-intron (ENSMUSG00000038910.7, intron 1 of 5) -81793 ENSMUSG00000038910.7 ENSMUSG00000038910 ENSMUST00000233823 Plcl2 protein_coding Interval_130448 chr5 127703722 127704260 + 0 NA intron (ENSMUSG00000049971.17, intron 11 of 11) protein_coding-intron (ENSMUSG00000049971.17, intron 11 of 11) 71729 ENSMUSG00000049971.17 ENSMUSG00000049971 ENSMUST00000134529 Glt1d1 protein_coding Interval_152668 chr7 136010008 136010397 + 0 NA Intergenic Intergenic 57404 ENSMUSG00000098031.1 ENSMUSG00000098031 ENSMUST00000183000 Gm9341 processed_pseudogene Interval_132961 chr5 148969522 148970145 + 0 NA promoter-TSS (ENSMUSG00000108207.2) processed_transcript-promoter-TSS (ENSMUSG00000108207.2) 289 ENSMUSG00000108207.2 ENSMUSG00000108207 ENSMUST00000204941 1810059H22Rik processed_transcript Interval_98142 chr2 148712608 148713477 + 0 NA intron (ENSMUSG00000027438.14, intron 1 of 3) protein_coding-intron (ENSMUSG00000027438.14, intron 1 of 10) 19349 ENSMUSG00000027438.14 ENSMUSG00000027438 ENSMUST00000140647 Napb protein_coding Interval_95849 chr2 117249372 117250549 + 0 NA intron (ENSMUSG00000027349.5, intron 1 of 7) protein_coding-intron (ENSMUSG00000027349.5, intron 1 of 7) 1689 ENSMUSG00000065845.1 ENSMUSG00000065845 ENSMUST00000083911 Gm25189 snRNA Interval_65506 chr16 22885353 22885957 + 0 NA intron (ENSMUSG00000116831.1, intron 2 of 3) antisense-intron (ENSMUSG00000116831.1, intron 2 of 3) 8731 ENSMUSG00000116831.1 ENSMUSG00000116831 ENSMUST00000231692 Gm30505 antisense Interval_140363 chr6 117210319 117210513 + 0 NA Intergenic Intergenic 3650 ENSMUSG00000090549.2 ENSMUSG00000090549 ENSMUST00000170447 Rpl28-ps4 processed_pseudogene Interval_162633 chr9 6995974 6996443 + 0 NA intron (ENSMUSG00000047193.16, intron 81 of 89) protein_coding-intron (ENSMUSG00000047193.16, intron 80 of 88) 121380 ENSMUSG00000047193.16 ENSMUSG00000047193 ENSMUST00000139115 Dync2h1 protein_coding Interval_6879 chr1 120307381 120307659 + 0 NA Intergenic Intergenic -33062 ENSMUSG00000036907.9 ENSMUSG00000036907 ENSMUST00000037286 C1ql2 protein_coding Interval_78177 chr18 9827677 9827904 + 0 NA promoter-TSS (ENSMUSG00000092816.1) miRNA-promoter-TSS (ENSMUSG00000092816.1) -671 ENSMUSG00000092816.1 ENSMUSG00000092816 ENSMUST00000175075 Gm23637 miRNA Interval_60412 chr15 73585790 73587533 + 0 NA TTS (ENSMUSG00000079020.9) protein_coding-TTS (ENSMUSG00000079020.9) 2301 ENSMUSG00000079020.9 ENSMUSG00000079020 ENSMUST00000150409 Slc45a4 protein_coding Interval_20379 chr10 117192797 117193327 + 0 NA Intergenic Intergenic -9651 ENSMUSG00000088397.1 ENSMUSG00000088397 ENSMUST00000157772 Gm26311 snoRNA Interval_15208 chr10 43372445 43373906 + 0 NA TTS (ENSMUSG00000089839.1) processed_pseudogene-TTS (ENSMUSG00000089839.1) 745 ENSMUSG00000089839.1 ENSMUSG00000089839 ENSMUST00000160308 Rps19-ps11 processed_pseudogene Interval_141895 chr6 135197558 135198852 + 0 NA promoter-TSS (ENSMUSG00000030207.15) protein_coding-promoter-TSS (ENSMUSG00000030207.15) 9725 ENSMUSG00000108239.1 ENSMUSG00000108239 ENSMUST00000204330 Gm19434 antisense Interval_23355 chr11 21723719 21724033 + 0 NA intron (ENSMUSG00000020319.9, intron 2 of 3) protein_coding-intron (ENSMUSG00000020319.9, intron 11 of 17) 28747 ENSMUSG00000020319.9 ENSMUSG00000020319 ENSMUST00000128794 Wdpcp protein_coding Interval_68903 chr16 88223491 88223732 + 0 NA intron (ENSMUSG00000022935.16, intron 1 of 16) protein_coding-intron (ENSMUSG00000022935.16, intron 1 of 15) 66253 ENSMUSG00000022935.16 ENSMUSG00000022935 ENSMUST00000210910 Grik1 protein_coding Interval_9747 chr1 161735498 161735732 + 0 NA Intergenic Intergenic -8126 ENSMUSG00000040323.13 ENSMUSG00000040323 ENSMUST00000151268 Gm15429 processed_pseudogene Interval_39652 chr12 91788232 91790499 + 0 NA promoter-TSS (ENSMUSG00000020961.15) protein_coding-promoter-TSS (ENSMUSG00000020961.15) 2309 ENSMUSG00000077096.1 ENSMUSG00000077096 ENSMUST00000103908 Gm22015 miRNA Interval_78468 chr18 13122373 13123126 + 0 NA Intergenic Intergenic 8812 ENSMUSG00000117447.1 ENSMUSG00000117447 ENSMUST00000234509 Gm5240 processed_pseudogene Interval_128723 chr5 114931653 114932472 + 0 NA intron (ENSMUSG00000041827.15, intron 3 of 3) protein_coding-intron (ENSMUSG00000041827.15, intron 4 of 6) 8640 ENSMUSG00000041827.15 ENSMUSG00000041827 ENSMUST00000155274 Oasl1 protein_coding Interval_43645 chr13 34398250 34398670 + 0 NA Intergenic Intergenic -3936 ENSMUSG00000113843.1 ENSMUSG00000113843 ENSMUST00000220725 Gm6129 processed_pseudogene Interval_104811 chr3 74458034 74458625 + 0 NA Intergenic Intergenic -134337 ENSMUSG00000104227.1 ENSMUSG00000104227 ENSMUST00000193464 Gm37050 processed_pseudogene Interval_139443 chr6 100219880 100220150 + 0 NA Intergenic Intergenic -28117 ENSMUSG00000108269.1 ENSMUSG00000108269 ENSMUST00000203798 Gm18422 transcribed_processed_pseudogene Interval_26403 chr11 57660204 57661695 + 0 NA intron (ENSMUSG00000020520.14, intron 1 of 2) protein_coding-intron (ENSMUSG00000020520.14, intron 1 of 11) -3123 ENSMUSG00000086933.1 ENSMUSG00000086933 ENSMUST00000143009 4933426K07Rik antisense Interval_143499 chr7 10769151 10770042 + 0 NA Intergenic Intergenic 11122 ENSMUSG00000109747.1 ENSMUSG00000109747 ENSMUST00000210242 Gm45438 processed_pseudogene Interval_146411 chr7 45749762 45750472 + 0 NA exon (ENSMUSG00000109602.1, exon 3 of 3) antisense-exon (ENSMUSG00000109602.1, exon 3 of 3) 8068 ENSMUSG00000109602.1 ENSMUSG00000109602 ENSMUST00000211176 Gm31597 antisense Interval_1054 chr1 14570366 14570970 + 0 NA Intergenic Intergenic -182269 ENSMUSG00000054493.2 ENSMUSG00000054493 ENSMUST00000067599 Gm9947 antisense Interval_163804 chr9 26439882 26440247 + 0 NA Intergenic Intergenic -53762 ENSMUSG00000111124.1 ENSMUSG00000111124 ENSMUST00000214282 Gm48373 processed_pseudogene Interval_156701 chr8 57466734 57467149 + 0 NA intron (ENSMUSG00000031610.3, intron 1 of 2) protein_coding-intron (ENSMUSG00000031610.3, intron 1 of 2) 11018 ENSMUSG00000031610.3 ENSMUSG00000031610 ENSMUST00000034023 Scrg1 protein_coding Interval_100160 chr2 167396224 167396980 + 0 NA Intergenic Intergenic -54453 ENSMUSG00000039463.14 ENSMUSG00000039463 ENSMUST00000148454 Slc9a8 protein_coding Interval_94417 chr2 91069787 91071153 + 0 NA promoter-TSS (ENSMUSG00000002105.15) protein_coding-promoter-TSS (ENSMUSG00000002105.15) -283 ENSMUSG00000002105.15 ENSMUSG00000002105 ENSMUST00000133047 Slc39a13 protein_coding Interval_173484 chrX 95165960 95166691 + 0 NA promoter-TSS (ENSMUSG00000025656.17) protein_coding-promoter-TSS (ENSMUSG00000025656.17) 30127 ENSMUSG00000025656.17 ENSMUSG00000025656 ENSMUST00000196012 Arhgef9 protein_coding Interval_156398 chr8 47909656 47909919 + 0 NA intron (ENSMUSG00000031563.8, intron 2 of 22) protein_coding-intron (ENSMUSG00000031563.8, intron 2 of 22) 10605 ENSMUSG00000064519.1 ENSMUSG00000064519 ENSMUST00000082585 n-R5s97 rRNA Interval_34957 chr12 15455520 15456890 + 0 NA Intergenic Intergenic -26838 ENSMUSG00000113069.1 ENSMUSG00000113069 ENSMUST00000222638 Gm48541 processed_pseudogene Interval_134570 chr6 29658287 29658596 + 0 NA Intergenic Intergenic -49587 ENSMUSG00000001763.14 ENSMUSG00000001763 ENSMUST00000137925 Tspan33 protein_coding Interval_30768 chr11 96352146 96355103 + 0 NA TTS (ENSMUSG00000075588.6) protein_coding-TTS (ENSMUSG00000075588.6) 1067 ENSMUSG00000084844.3 ENSMUSG00000084844 ENSMUST00000131275 Hoxb3os antisense Interval_132284 chr5 143932381 143934098 + 0 NA exon (ENSMUSG00000079109.11, exon 14 of 14) protein_coding-exon (ENSMUSG00000079109.11, exon 14 of 14) 5064 ENSMUSG00000104633.1 ENSMUSG00000104633 ENSMUST00000172367 Gm42421 protein_coding Interval_148168 chr7 79600010 79600468 + 0 NA intron (ENSMUSG00000030549.6, intron 5 of 10) protein_coding-intron (ENSMUSG00000030549.6, intron 5 of 10) 3437 ENSMUSG00000108318.1 ENSMUSG00000108318 ENSMUST00000206746 Gm45170 TEC Interval_146910 chr7 55812443 55813739 + 0 NA intron (ENSMUSG00000033790.11, intron 11 of 20) protein_coding-intron (ENSMUSG00000033790.11, intron 11 of 22) 18926 ENSMUSG00000033790.11 ENSMUSG00000033790 ENSMUST00000206133 Tubgcp5 protein_coding Interval_107475 chr3 107958426 107958619 + 0 NA Intergenic Intergenic -5401 ENSMUSG00000089664.2 ENSMUSG00000089664 ENSMUST00000121684 Gm12494 unprocessed_pseudogene Interval_167861 chr9 73124876 73126505 + 0 NA Intergenic Intergenic -6999 ENSMUSG00000103556.1 ENSMUSG00000103556 ENSMUST00000192321 Gm38215 TEC Interval_148975 chr7 90553800 90555063 + 0 NA intron (ENSMUSG00000052572.19, intron 3 of 27) protein_coding-intron (ENSMUSG00000052572.19, intron 3 of 27) -78436 ENSMUSG00000030614.8 ENSMUSG00000030614 ENSMUST00000123622 Tmem126b protein_coding Interval_172866 chrX 52347810 52349502 + 0 NA intron (ENSMUSG00000055653.13, intron 6 of 7) protein_coding-intron (ENSMUSG00000055653.13, intron 6 of 7) 29525 ENSMUSG00000105738.1 ENSMUSG00000105738 ENSMUST00000196833 Mir6384 miRNA Interval_67829 chr16 57527158 57527376 + 0 NA intron (ENSMUSG00000043336.14, intron 4 of 4) protein_coding-intron (ENSMUSG00000022748.8, intron 1 of 9) 79597 ENSMUSG00000022748.8 ENSMUSG00000022748 ENSMUST00000232413 Cmss1 protein_coding Interval_96689 chr2 127172921 127173141 + 0 NA Intergenic Intergenic -30441 ENSMUSG00000074825.4 ENSMUSG00000074825 ENSMUST00000154021 Itpripl1 protein_coding Interval_53182 chr14 54968894 54969746 + 0 NA exon (ENSMUSG00000097652.2, exon 2 of 2) antisense-exon (ENSMUSG00000097652.2, exon 2 of 2) 642 ENSMUSG00000097652.2 ENSMUSG00000097652 ENSMUST00000181782 Mhrt antisense Interval_174670 chrX 162781707 162781926 + 0 NA intron (ENSMUSG00000038344.14, intron 7 of 7) protein_coding-intron (ENSMUSG00000038344.14, intron 9 of 9) 7238 ENSMUSG00000031353.13 ENSMUSG00000031353 ENSMUST00000143681 Rbbp7 protein_coding Interval_87526 chr19 53256336 53256750 + 0 NA intron (ENSMUSG00000118314.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000118314.1, intron 1 of 2) -1353 ENSMUSG00000118314.1 ENSMUSG00000118314 ENSMUST00000237379 1700001K23Rik lincRNA Interval_147000 chr7 57640012 57642098 + 0 NA intron (ENSMUSG00000033676.13, intron 3 of 8) protein_coding-intron (ENSMUSG00000033676.13, intron 3 of 8) 50537 ENSMUSG00000033676.13 ENSMUSG00000033676 ENSMUST00000136033 Gabrb3 protein_coding Interval_98274 chr2 150718764 150719376 + 0 NA Intergenic Intergenic 5551 ENSMUSG00000100630.1 ENSMUSG00000100630 ENSMUST00000187349 Gm28450 lincRNA Interval_84295 chr19 9908777 9909582 + 0 NA TTS (ENSMUSG00000080659.1) miRNA-TTS (ENSMUSG00000080659.1) 1021 ENSMUSG00000080659.1 ENSMUSG00000080659 ENSMUST00000117009 Gm24484 miRNA Interval_173772 chrX 103956743 103957544 + 0 NA TTS (ENSMUSG00000056537.11) protein_coding-TTS (ENSMUSG00000056537.11) 24141 ENSMUSG00000056537.11 ENSMUSG00000056537 ENSMUST00000135101 Rlim protein_coding Interval_162204 chr8 125935245 125936063 + 0 NA intron (ENSMUSG00000031853.5, intron 5 of 9) protein_coding-intron (ENSMUSG00000031853.5, intron 5 of 9) 25204 ENSMUSG00000031853.5 ENSMUSG00000031853 ENSMUST00000034316 Map3k21 protein_coding Interval_71589 chr17 24713031 24713382 + 0 NA Intergenic Intergenic 4806 ENSMUSG00000008482.9 ENSMUSG00000008482 ENSMUST00000234399 Rnf151 protein_coding Interval_35866 chr12 31327303 31327618 + 0 NA intron (ENSMUSG00000002900.17, intron 30 of 32) protein_coding-intron (ENSMUSG00000002900.17, intron 30 of 32) 23954 ENSMUSG00000020664.10 ENSMUSG00000020664 ENSMUST00000220415 Dld protein_coding Interval_138014 chr6 84143153 84143811 + 0 NA intron (ENSMUSG00000033788.15, intron 36 of 55) protein_coding-intron (ENSMUSG00000033788.15, intron 36 of 54) -36475 ENSMUSG00000087001.2 ENSMUSG00000087001 ENSMUST00000137673 Gm15475 antisense Interval_170828 chr9 111015582 111016002 + 0 NA Intergenic Intergenic -8594 ENSMUSG00000032496.7 ENSMUSG00000032496 ENSMUST00000197575 Ltf protein_coding Interval_54653 chr14 72934958 72935180 + 0 NA Intergenic Intergenic 32910 ENSMUSG00000115475.1 ENSMUSG00000115475 ENSMUST00000228487 Gm49295 processed_pseudogene Interval_44932 chr13 50220719 50221362 + 0 NA Intergenic Intergenic -12952 ENSMUSG00000113718.1 ENSMUSG00000113718 ENSMUST00000223516 Gm2645 processed_pseudogene Interval_157906 chr8 75480050 75480245 + 0 NA intron (ENSMUSG00000031620.16, intron 3 of 14) protein_coding-intron (ENSMUSG00000031620.16, intron 1 of 12) 31356 ENSMUSG00000031620.16 ENSMUSG00000031620 ENSMUST00000121983 Iqcm protein_coding Interval_124713 chr5 53516744 53516948 + 0 NA intron (ENSMUSG00000039191.12, intron 1 of 6) protein_coding-intron (ENSMUSG00000039191.12, intron 1 of 6) 5885 ENSMUSG00000106807.1 ENSMUSG00000106807 ENSMUST00000200950 Gm10441 antisense Interval_165270 chr9 45946556 45947063 + 0 NA promoter-TSS (ENSMUSG00000034908.16) protein_coding-promoter-TSS (ENSMUSG00000034908.16) 5022 ENSMUSG00000034908.16 ENSMUSG00000034908 ENSMUST00000160911 Sidt2 protein_coding Interval_98225 chr2 150181220 150182178 + 0 NA promoter-TSS (ENSMUSG00000079009.8) protein_coding-promoter-TSS (ENSMUSG00000079009.8) -2020 ENSMUSG00000074837.2 ENSMUSG00000074837 ENSMUST00000099418 Gm10770 protein_coding Interval_24022 chr11 29568555 29568840 + 0 NA intron (ENSMUSG00000020461.10, intron 1 of 3) protein_coding-intron (ENSMUSG00000020461.10, intron 8 of 11) -15687 ENSMUSG00000081575.1 ENSMUSG00000081575 ENSMUST00000118692 Gm12090 processed_pseudogene Interval_34757 chr12 9682983 9683545 + 0 NA Intergenic Intergenic -7427 ENSMUSG00000112043.1 ENSMUSG00000112043 ENSMUST00000218559 Gm48774 processed_pseudogene Interval_149384 chr7 97976979 97977800 + 0 NA intron (ENSMUSG00000035582.13, intron 9 of 16) protein_coding-intron (ENSMUSG00000035582.13, intron 10 of 17) 19568 ENSMUSG00000035582.13 ENSMUSG00000035582 ENSMUST00000170049 Gdpd4 protein_coding Interval_164385 chr9 36612232 36612530 + 0 NA Intergenic Intergenic -29746 ENSMUSG00000091248.1 ENSMUSG00000091248 ENSMUST00000170030 Pate8 protein_coding Interval_113844 chr4 59308177 59308385 + 0 NA Intergenic Intergenic 7685 ENSMUSG00000038578.15 ENSMUSG00000038578 ENSMUST00000136077 Susd1 protein_coding Interval_52321 chr14 44858255 44859692 + 0 NA promoter-TSS (ENSMUSG00000085500.9) transcribed_unprocessed_pseudogene-promoter-TSS (ENSMUSG00000085500.9) 402 ENSMUSG00000071489.1 ENSMUSG00000071489 ENSMUST00000095959 Ptgdr protein_coding Interval_43659 chr13 34644203 34644766 + 0 NA intron (ENSMUSG00000021411.16, intron 1 of 4) protein_coding-intron (ENSMUSG00000021411.16, intron 1 of 5) 4084 ENSMUSG00000021411.16 ENSMUSG00000021411 ENSMUST00000152392 Pxdc1 protein_coding Interval_53123 chr14 54590985 54591484 + 0 NA exon (ENSMUSG00000022179.5, exon 3 of 7) protein_coding-exon (ENSMUSG00000022179.5, exon 3 of 7) -5735 ENSMUSG00000022179.5 ENSMUSG00000022179 ENSMUST00000228422 4931414P19Rik protein_coding Interval_81324 chr18 58013349 58013748 + 0 NA intron (ENSMUSG00000024598.9, intron 63 of 64) protein_coding-intron (ENSMUSG00000024598.9, intron 63 of 64) 86343 ENSMUSG00000024597.11 ENSMUSG00000024597 ENSMUST00000236673 Slc12a2 protein_coding Interval_169955 chr9 103184447 103185771 + 0 NA exon (ENSMUSG00000032549.7, exon 8 of 8) protein_coding-exon (ENSMUSG00000032549.7, exon 8 of 8) 7203 ENSMUSG00000032553.14 ENSMUSG00000032553 ENSMUST00000190760 Srprb protein_coding Interval_131865 chr5 140468811 140469338 + 0 NA exon (ENSMUSG00000106350.2, exon 8 of 20) protein_coding-exon (ENSMUSG00000106350.2, exon 8 of 20) -15183 ENSMUSG00000105056.1 ENSMUSG00000105056 ENSMUST00000196158 Gm42805 processed_pseudogene Interval_28177 chr11 73528627 73530070 + 0 NA Intergenic Intergenic 12005 ENSMUSG00000081961.1 ENSMUSG00000081961 ENSMUST00000118895 Olfr383-ps1 unprocessed_pseudogene Interval_32450 chr11 107608901 107609332 + 0 NA intron (ENSMUSG00000020721.16, intron 12 of 32) protein_coding-intron (ENSMUSG00000020721.16, intron 11 of 31) -28606 ENSMUSG00000098497.1 ENSMUSG00000098497 ENSMUST00000185044 Mir6932 miRNA Interval_94343 chr2 90049903 90050082 + 0 NA exon (ENSMUSG00000075068.3, exon 2 of 2) protein_coding-exon (ENSMUSG00000075068.3, exon 2 of 2) 13602 ENSMUSG00000075068.3 ENSMUSG00000075068 ENSMUST00000099757 Olfr140 protein_coding Interval_147986 chr7 76353313 76354752 + 0 NA intron (ENSMUSG00000025754.11, intron 5 of 22) protein_coding-intron (ENSMUSG00000025754.11, intron 5 of 22) -108094 ENSMUSG00000098009.1 ENSMUSG00000098009 ENSMUST00000182353 Gm5597 processed_pseudogene Interval_1760 chr1 33600365 33601485 + 0 NA intron (ENSMUSG00000026134.11, intron 7 of 13) protein_coding-intron (ENSMUSG00000026134.11, intron 7 of 13) 15907 ENSMUSG00000102714.1 ENSMUSG00000102714 ENSMUST00000192891 Gm37618 TEC Interval_144995 chr7 29316787 29318459 + 0 NA TTS (ENSMUSG00000030584.14) protein_coding-TTS (ENSMUSG00000030584.14) 1779 ENSMUSG00000109351.1 ENSMUSG00000109351 ENSMUST00000207245 Gm44632 antisense Interval_118992 chr4 134891811 134892773 + 0 NA exon (ENSMUSG00000028825.7, exon 8 of 10) protein_coding-exon (ENSMUSG00000028825.7, exon 8 of 10) 12482 ENSMUSG00000028825.7 ENSMUSG00000028825 ENSMUST00000136163 Rhd protein_coding Interval_40269 chr12 102938482 102939195 + 0 NA Intergenic Intergenic 39522 ENSMUSG00000043319.5 ENSMUSG00000043319 ENSMUST00000053611 Cox8c protein_coding Interval_102959 chr3 33767897 33768254 + 0 NA Intergenic Intergenic -8459 ENSMUSG00000104588.1 ENSMUSG00000104588 ENSMUST00000197116 Gm43666 lincRNA Interval_92679 chr2 62454902 62455091 + 0 NA intron (ENSMUSG00000087422.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000087422.1, intron 1 of 2) 1652 ENSMUSG00000087422.1 ENSMUSG00000087422 ENSMUST00000131533 Gm13564 lincRNA Interval_133998 chr6 17612297 17612972 + 0 NA Intergenic Intergenic -24401 ENSMUSG00000015733.13 ENSMUSG00000015733 ENSMUST00000142592 Capza2 protein_coding Interval_14985 chr10 41714996 41716504 + 0 NA intron (ENSMUSG00000075225.15, intron 1 of 47) protein_coding-intron (ENSMUSG00000075225.15, intron 1 of 47) -29694 ENSMUSG00000111376.1 ENSMUSG00000111376 ENSMUST00000214137 Gm47099 processed_pseudogene Interval_118688 chr4 133200215 133201878 + 0 NA Intergenic Intergenic 5391 ENSMUSG00000099202.1 ENSMUSG00000099202 ENSMUST00000184894 Mir7017 miRNA Interval_7267 chr1 128328316 128328758 + 0 NA promoter-TSS (ENSMUSG00000026354.8) protein_coding-promoter-TSS (ENSMUSG00000026354.8) 17505 ENSMUSG00000026355.11 ENSMUSG00000026355 ENSMUST00000188755 Mcm6 protein_coding Interval_156844 chr8 61037308 61037557 + 0 NA intron (ENSMUSG00000031644.19, intron 11 of 34) protein_coding-intron (ENSMUSG00000031644.19, intron 11 of 32) -12617 ENSMUSG00000109708.1 ENSMUSG00000109708 ENSMUST00000211661 Gm45809 TEC Interval_7529 chr1 132007273 132008615 + 0 NA promoter-TSS (ENSMUSG00000026436.15) protein_coding-promoter-TSS (ENSMUSG00000026436.15) -9864 ENSMUSG00000026436.15 ENSMUSG00000026436 ENSMUST00000131159 Elk4 protein_coding Interval_5724 chr1 91240654 91241302 + 0 NA Intergenic Intergenic -9678 ENSMUSG00000034343.14 ENSMUSG00000034343 ENSMUST00000185697 Ube2f protein_coding Interval_21528 chr10 129246562 129247066 + 0 NA Intergenic Intergenic -1598 ENSMUSG00000096220.2 ENSMUSG00000096220 ENSMUST00000097163 Olfr775 protein_coding Interval_105175 chr3 83211940 83212162 + 0 NA intron (ENSMUSG00000102692.1, intron 1 of 19) protein_coding-intron (ENSMUSG00000102692.1, intron 1 of 19) -82805 ENSMUSG00000074517.2 ENSMUSG00000074517 ENSMUST00000047876 Gm10710 lincRNA Interval_57039 chr15 5075898 5076094 + 0 NA Intergenic Intergenic -12256 ENSMUSG00000079105.4 ENSMUSG00000079105 ENSMUST00000110689 C7 protein_coding Interval_75721 chr17 70850563 70851928 + 0 NA promoter-TSS (ENSMUSG00000047407.17) protein_coding-promoter-TSS (ENSMUSG00000047407.17) -1431 ENSMUSG00000047407.17 ENSMUSG00000047407 ENSMUST00000125329 Tgif1 protein_coding Interval_36725 chr12 52595534 52596006 + 0 NA Intergenic Intergenic 6548 ENSMUSG00000100315.6 ENSMUSG00000100315 ENSMUST00000186498 1700031P21Rik lincRNA Interval_112264 chr4 39353471 39354489 + 0 NA Intergenic Intergenic 58517 ENSMUSG00000077738.1 ENSMUSG00000077738 ENSMUST00000104550 Gm23607 snoRNA Interval_129178 chr5 118009135 118009731 + 0 NA TTS (ENSMUSG00000032898.9) protein_coding-TTS (ENSMUSG00000032898.9) 17937 ENSMUSG00000107058.1 ENSMUSG00000107058 ENSMUST00000202755 Gm42545 TEC Interval_24857 chr11 40516466 40516807 + 0 NA Intergenic Intergenic 11038 ENSMUSG00000081097.1 ENSMUSG00000081097 ENSMUST00000119170 Gm12135 processed_pseudogene Interval_134444 chr6 28770681 28771786 + 0 NA intron (ENSMUSG00000001424.14, intron 1 of 2) protein_coding-intron (ENSMUSG00000001424.14, intron 15 of 23) -25230 ENSMUSG00000103899.1 ENSMUSG00000103899 ENSMUST00000194243 Gm37940 TEC Interval_21788 chr11 4343467 4344507 + 0 NA Intergenic Intergenic -19732 ENSMUSG00000065627.1 ENSMUSG00000065627 ENSMUST00000083693 Gm24803 snRNA Interval_64609 chr16 13650944 13651146 + 0 NA TTS (ENSMUSG00000022685.9) protein_coding-TTS (ENSMUSG00000022685.9) 17093 ENSMUSG00000022685.9 ENSMUSG00000022685 ENSMUST00000229251 Parn protein_coding Interval_142461 chr6 142524676 142525482 + 0 NA Intergenic Intergenic -17136 ENSMUSG00000030246.12 ENSMUSG00000030246 ENSMUST00000134191 Ldhb protein_coding Interval_156185 chr8 45752033 45752710 + 0 NA intron (ENSMUSG00000031626.18, intron 5 of 5) protein_coding-intron (ENSMUSG00000031626.18, intron 6 of 25) -26857 ENSMUSG00000110411.1 ENSMUSG00000110411 ENSMUST00000209931 Gm45457 TEC Interval_89294 chr2 18947074 18947351 + 0 NA intron (ENSMUSG00000026737.12, intron 1 of 9) protein_coding-intron (ENSMUSG00000026737.12, intron 1 of 9) -40938 ENSMUSG00000026737.12 ENSMUSG00000026737 ENSMUST00000152981 Pip4k2a protein_coding Interval_172715 chrX 47736414 47736869 + 0 NA Intergenic Intergenic 12113 ENSMUSG00000082894.1 ENSMUSG00000082894 ENSMUST00000121552 Gm6480 processed_pseudogene Interval_101057 chr2 174706389 174707308 + 0 NA exon (ENSMUSG00000050600.5, exon 5 of 5) protein_coding-exon (ENSMUSG00000050600.5, exon 5 of 5) -63074 ENSMUSG00000027524.9 ENSMUSG00000027524 ENSMUST00000162473 Edn3 protein_coding Interval_78341 chr18 12072210 12072654 + 0 NA intron (ENSMUSG00000049411.15, intron 4 of 8) protein_coding-intron (ENSMUSG00000049411.15, intron 4 of 12) 49048 ENSMUSG00000049411.15 ENSMUSG00000049411 ENSMUST00000234833 Tmem241 protein_coding Interval_40881 chr12 109052362 109054307 + 0 NA exon (ENSMUSG00000040867.13, exon 1 of 4) protein_coding-exon (ENSMUSG00000040867.13, exon 1 of 4) 441 ENSMUSG00000040867.13 ENSMUSG00000040867 ENSMUST00000185745 Begain protein_coding Interval_87839 chr19 56399945 56400976 + 0 NA intron (ENSMUSG00000025076.11, intron 1 of 2) protein_coding-intron (ENSMUSG00000025076.11, intron 1 of 6) -20595 ENSMUSG00000049134.15 ENSMUSG00000049134 ENSMUST00000166203 Nrap protein_coding Interval_156029 chr8 42927982 42928648 + 0 NA Intergenic Intergenic -157272 ENSMUSG00000109627.1 ENSMUSG00000109627 ENSMUST00000209715 Gm45590 processed_pseudogene Interval_126358 chr5 87040679 87040970 + 0 NA Intergenic Intergenic 14841 ENSMUSG00000106003.1 ENSMUSG00000106003 ENSMUST00000197036 Gm42465 unprocessed_pseudogene Interval_126454 chr5 88666881 88667127 + 0 NA intron (ENSMUSG00000044221.14, intron 5 of 5) protein_coding-intron (ENSMUSG00000044221.14, intron 5 of 9) 8666 ENSMUSG00000044221.14 ENSMUSG00000044221 ENSMUST00000137725 Grsf1 protein_coding Interval_97215 chr2 132289097 132289422 + 0 NA intron (ENSMUSG00000058793.14, intron 1 of 12) protein_coding-intron (ENSMUSG00000058793.14, intron 1 of 12) 26018 ENSMUSG00000058793.14 ENSMUSG00000058793 ENSMUST00000138194 Cds2 protein_coding Interval_8700 chr1 149074543 149075107 + 0 NA Intergenic Intergenic -31290 ENSMUSG00000102074.1 ENSMUSG00000102074 ENSMUST00000191166 Gm29020 lincRNA Interval_53982 chr14 64049145 64049466 + 0 NA Intergenic Intergenic 19432 ENSMUSG00000046049.7 ENSMUSG00000046049 ENSMUST00000224314 Rp1l1 protein_coding Interval_31347 chr11 100181454 100181740 + 0 NA Intergenic Intergenic 11649 ENSMUSG00000051617.3 ENSMUSG00000051617 ENSMUST00000059707 Krt9 protein_coding Interval_50262 chr14 11523071 11523331 + 0 NA Intergenic Intergenic -2431 ENSMUSG00000114849.1 ENSMUSG00000114849 ENSMUST00000224543 Gm48595 lincRNA Interval_172196 chrX 8892344 8893834 + 0 NA exon (ENSMUSG00000052364.4, exon 1 of 1) protein_coding-exon (ENSMUSG00000052364.4, exon 1 of 1) 707 ENSMUSG00000052364.4 ENSMUSG00000052364 ENSMUST00000064196 B630019K06Rik protein_coding Interval_26243 chr11 55392234 55393159 + 0 NA Intergenic Intergenic 27629 ENSMUSG00000018593.13 ENSMUSG00000018593 ENSMUST00000125787 Sparc protein_coding Interval_54050 chr14 64787696 64788321 + 0 NA promoter-TSS (ENSMUSG00000060012.9) protein_coding-promoter-TSS (ENSMUSG00000060012.9) 34090 ENSMUSG00000064442.1 ENSMUSG00000064442 ENSMUST00000082508 Gm26225 snoRNA Interval_38805 chr12 82485419 82485963 + 0 NA Intergenic Intergenic 10846 ENSMUSG00000094374.2 ENSMUSG00000094374 ENSMUST00000179295 Gm5435 processed_pseudogene Interval_122731 chr5 24956963 24957147 + 0 NA intron (ENSMUSG00000028944.14, intron 3 of 15) protein_coding-intron (ENSMUSG00000028944.14, intron 3 of 15) -28787 ENSMUSG00000059631.6 ENSMUSG00000059631 ENSMUST00000075081 1500035N22Rik lincRNA Interval_21671 chr11 3602051 3602953 + 0 NA Intergenic Intergenic 23346 ENSMUSG00000084211.1 ENSMUSG00000084211 ENSMUST00000117640 Gm11949 processed_pseudogene Interval_134020 chr6 17773253 17774497 + 0 NA intron (ENSMUSG00000029534.17, intron 1 of 15) protein_coding-intron (ENSMUSG00000029534.17, intron 1 of 14) -24975 ENSMUSG00000106801.1 ENSMUSG00000106801 ENSMUST00000202649 Gm42852 TEC Interval_123562 chr5 33501016 33502456 + 0 NA Intergenic Intergenic -64272 ENSMUSG00000107248.1 ENSMUSG00000107248 ENSMUST00000200726 Gm43851 lincRNA Interval_59869 chr15 60344647 60344917 + 0 NA Intergenic Intergenic -47337 ENSMUSG00000115251.1 ENSMUSG00000115251 ENSMUST00000228258 Gm4774 processed_pseudogene Interval_74322 chr17 48953934 48954194 + 0 NA intron (ENSMUSG00000040490.4, intron 1 of 2) protein_coding-intron (ENSMUSG00000040490.4, intron 1 of 2) 21685 ENSMUSG00000040490.4 ENSMUSG00000040490 ENSMUST00000046254 Lrfn2 protein_coding Interval_102515 chr3 27419348 27420176 + 0 NA intron (ENSMUSG00000039286.12, intron 26 of 26) protein_coding-intron (ENSMUSG00000039286.12, intron 25 of 25) 48411 ENSMUSG00000051136.1 ENSMUSG00000051136 ENSMUST00000057186 Ghsr protein_coding Interval_108541 chr3 128306578 128306876 + 0 NA Intergenic Intergenic -25636 ENSMUSG00000106119.1 ENSMUSG00000106119 ENSMUST00000197882 Gm43656 processed_pseudogene Interval_99837 chr2 165221546 165223243 + 0 NA intron (ENSMUSG00000053166.14, intron 1 of 11) protein_coding-intron (ENSMUSG00000053166.14, intron 1 of 11) -40935 ENSMUSG00000053166.14 ENSMUSG00000053166 ENSMUST00000138643 Cdh22 protein_coding Interval_172031 chr9 123678226 123679483 + 0 NA promoter-TSS (ENSMUSG00000036814.13) protein_coding-promoter-TSS (ENSMUSG00000036814.13) -48 ENSMUSG00000036814.13 ENSMUSG00000036814 ENSMUST00000170591 Slc6a20a protein_coding Interval_172314 chrX 12886377 12887080 + 0 NA Intergenic Intergenic -16366 ENSMUSG00000077858.1 ENSMUSG00000077858 ENSMUST00000104666 Gm25063 miRNA Interval_164220 chr9 32695464 32696576 + 0 NA promoter-TSS (ENSMUSG00000032035.16) protein_coding-promoter-TSS (ENSMUSG00000032035.16) 15151 ENSMUSG00000098843.1 ENSMUSG00000098843 ENSMUST00000183616 Gm27240 antisense Interval_89423 chr2 20594309 20598090 + 0 NA intron (ENSMUSG00000036617.17, intron 1 of 2) protein_coding-intron (ENSMUSG00000036617.17, intron 3 of 18) 36395 ENSMUSG00000098575.1 ENSMUSG00000098575 ENSMUST00000183963 Gm27446 misc_RNA Interval_37251 chr12 63027691 63028875 + 0 NA Intergenic Intergenic 44861 ENSMUSG00000058933.5 ENSMUSG00000058933 ENSMUST00000080271 Gm5185 processed_pseudogene Interval_103989 chr3 56302437 56303668 + 0 NA Intergenic Intergenic -135483 ENSMUSG00000105293.1 ENSMUSG00000105293 ENSMUST00000196328 Gm42843 TEC Interval_137693 chr6 79506528 79507770 + 0 NA Intergenic Intergenic -34059 ENSMUSG00000107618.1 ENSMUSG00000107618 ENSMUST00000204707 Gm6261 processed_pseudogene Interval_69413 chr16 93021737 93022258 + 0 NA Intergenic Intergenic -50758 ENSMUSG00000098983.1 ENSMUSG00000098983 ENSMUST00000184529 Gm28003 miRNA Interval_144522 chr7 25668794 25670787 + 0 NA TTS (ENSMUSG00000061702.10) protein_coding-TTS (ENSMUSG00000061702.10) 3683 ENSMUSG00000061702.10 ENSMUSG00000061702 ENSMUST00000126983 Tmem91 protein_coding Interval_26895 chr11 61361441 61363247 + 0 NA TTS (ENSMUSG00000010122.14) protein_coding-TTS (ENSMUSG00000010122.14) 16001 ENSMUSG00000010122.14 ENSMUSG00000010122 ENSMUST00000148671 Slc47a1 protein_coding Interval_86854 chr19 44376362 44376755 + 0 NA Intergenic Intergenic 30132 ENSMUSG00000037071.3 ENSMUSG00000037071 ENSMUST00000235741 Scd1 protein_coding Interval_158163 chr8 79355862 79356542 + 0 NA intron (ENSMUSG00000031681.16, intron 3 of 3) protein_coding-intron (ENSMUSG00000031681.16, intron 3 of 3) 476 ENSMUSG00000031681.16 ENSMUSG00000031681 ENSMUST00000066081 Smad1 protein_coding Interval_123787 chr5 35510656 35511094 + 0 NA intron (ENSMUSG00000036596.6, intron 7 of 10) protein_coding-intron (ENSMUSG00000036596.6, intron 7 of 10) 14696 ENSMUSG00000036596.6 ENSMUSG00000036596 ENSMUST00000132959 Cpz protein_coding Interval_163907 chr9 28242304 28242646 + 0 NA intron (ENSMUSG00000062257.13, intron 1 of 7) protein_coding-intron (ENSMUSG00000062257.13, intron 1 of 7) 44535 ENSMUSG00000087531.7 ENSMUSG00000087531 ENSMUST00000139851 Gm15606 sense_intronic Interval_3180 chr1 54515358 54515567 + 0 NA intron (ENSMUSG00000073678.4, intron 13 of 26) protein_coding-intron (ENSMUSG00000073678.4, intron 13 of 26) 4808 ENSMUSG00000104136.1 ENSMUSG00000104136 ENSMUST00000194316 Gm36955 TEC Interval_122704 chr5 24778228 24779056 + 0 NA Intergenic Intergenic -27318 ENSMUSG00000038135.4 ENSMUSG00000038135 ENSMUST00000047119 Crygn protein_coding Interval_75555 chr17 67988602 67989529 + 0 NA intron (ENSMUSG00000024043.13, intron 1 of 17) protein_coding-intron (ENSMUSG00000024043.13, intron 1 of 17) -116017 ENSMUSG00000024043.13 ENSMUSG00000024043 ENSMUST00000170581 Arhgap28 protein_coding Interval_59154 chr15 45003263 45003738 + 0 NA Intergenic Intergenic -31367 ENSMUSG00000058463.3 ENSMUSG00000058463 ENSMUST00000072732 Gm5471 processed_pseudogene Interval_60666 chr15 76020547 76020766 + 0 NA intron (ENSMUSG00000102018.8, intron 3 of 13) protein_coding-intron (ENSMUSG00000102018.8, intron 2 of 4) -7275 ENSMUSG00000046761.13 ENSMUSG00000046761 ENSMUST00000060807 Fam83h protein_coding Interval_6960 chr1 121396262 121396570 + 0 NA Intergenic Intergenic -34659 ENSMUSG00000026339.18 ENSMUSG00000026339 ENSMUST00000152959 Ccdc93 protein_coding Interval_854 chr1 12701679 12702647 + 0 NA intron (ENSMUSG00000016918.15, intron 1 of 20) protein_coding-intron (ENSMUSG00000016918.15, intron 1 of 21) -17301 ENSMUSG00000016918.15 ENSMUSG00000016918 ENSMUST00000185780 Sulf1 protein_coding Interval_115390 chr4 98496812 98497007 + 0 NA exon (ENSMUSG00000061859.17, exon 20 of 44) protein_coding-exon (ENSMUSG00000061859.17, exon 20 of 44) 60956 ENSMUSG00000094456.1 ENSMUSG00000094456 ENSMUST00000175382 Gm22625 miRNA Interval_170361 chr9 107416324 107416826 + 0 NA intron (ENSMUSG00000010066.15, intron 1 of 37) protein_coding-intron (ENSMUSG00000010066.15, intron 1 of 37) 13992 ENSMUSG00000091816.1 ENSMUSG00000091816 ENSMUST00000167578 Gm17141 antisense Interval_14045 chr10 25958717 25959738 + 0 NA intron (ENSMUSG00000049420.9, intron 1 of 2) protein_coding-intron (ENSMUSG00000049420.9, intron 1 of 2) 59948 ENSMUSG00000112324.1 ENSMUSG00000112324 ENSMUST00000219283 Gm47939 lincRNA Interval_106630 chr3 97932938 97933560 + 0 NA intron (ENSMUSG00000074388.3, intron 1 of 1) lincRNA-intron (ENSMUSG00000074388.3, intron 1 of 1) 3076 ENSMUSG00000074388.3 ENSMUSG00000074388 ENSMUST00000098828 Gm5544 lincRNA Interval_79503 chr18 32434879 32435617 + 0 NA TTS (ENSMUSG00000024381.16) protein_coding-TTS (ENSMUSG00000024381.16) -27331 ENSMUSG00000109232.1 ENSMUSG00000109232 ENSMUST00000207413 Gm44577 bidirectional_promoter_lncRNA Interval_46423 chr13 65133012 65133312 + 0 NA Intergenic Intergenic -4927 ENSMUSG00000108426.2 ENSMUSG00000108426 ENSMUST00000206324 Olfr465-ps1 protein_coding Interval_69440 chr16 93463487 93464739 + 0 NA Intergenic Intergenic -5308 ENSMUSG00000099968.7 ENSMUSG00000099968 ENSMUST00000231859 1700029J03Rik lincRNA Interval_58033 chr15 26872416 26872697 + 0 NA intron (ENSMUSG00000043556.10, intron 1 of 1) protein_coding-intron (ENSMUSG00000043556.10, intron 1 of 3) 22962 ENSMUSG00000043556.10 ENSMUSG00000043556 ENSMUST00000226377 Fbxl7 protein_coding Interval_110837 chr4 8865688 8866563 + 0 NA exon (ENSMUSG00000041235.12, exon 38 of 38) protein_coding-exon (ENSMUSG00000041235.12, exon 38 of 38) 10894 ENSMUSG00000041235.12 ENSMUSG00000041235 ENSMUST00000222546 Chd7 protein_coding Interval_1050 chr1 14482024 14482813 + 0 NA Intergenic Intergenic -177848 ENSMUSG00000025932.14 ENSMUSG00000025932 ENSMUST00000185329 Eya1 protein_coding Interval_77997 chr18 6524659 6525670 + 0 NA Intergenic Intergenic -31966 ENSMUSG00000117425.1 ENSMUSG00000117425 ENSMUST00000234402 Gm7464 processed_pseudogene Interval_97103 chr2 131248862 131249315 + 0 NA Intergenic Intergenic 7154 ENSMUSG00000037523.13 ENSMUSG00000037523 ENSMUST00000132694 Mavs protein_coding Interval_105046 chr3 80168484 80168827 + 0 NA intron (ENSMUSG00000103181.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000103181.1, intron 1 of 2) 25975 ENSMUSG00000103154.1 ENSMUSG00000103154 ENSMUST00000191951 Gm38295 unprocessed_pseudogene Interval_62991 chr15 98525424 98526588 + 0 NA TTS (ENSMUSG00000065939.1) snoRNA-TTS (ENSMUSG00000065939.1) 476 ENSMUSG00000065939.1 ENSMUSG00000065939 ENSMUST00000084005 Snora2b snoRNA Interval_158037 chr8 78212904 78213664 + 0 NA promoter-TSS (ENSMUSG00000037101.16) protein_coding-promoter-TSS (ENSMUSG00000037101.16) -66 ENSMUSG00000037101.16 ENSMUSG00000037101 ENSMUST00000124713 Ttc29 protein_coding Interval_143427 chr7 6710713 6711106 + 0 NA TTS (ENSMUSG00000002265.17) protein_coding-TTS (ENSMUSG00000002265.17) 19512 ENSMUSG00000002265.17 ENSMUSG00000002265 ENSMUST00000155910 Peg3 protein_coding Interval_121673 chr5 4961696 4962559 + 0 NA intron (ENSMUSG00000028926.15, intron 2 of 3) protein_coding-intron (ENSMUSG00000028926.15, intron 10 of 14) 23110 ENSMUSG00000106272.1 ENSMUSG00000106272 ENSMUST00000197782 Gm22897 scaRNA Interval_163609 chr9 22508861 22509790 + 0 NA intron (ENSMUSG00000035919.16, intron 5 of 22) protein_coding-intron (ENSMUSG00000035919.16, intron 4 of 21) -3132 ENSMUSG00000035919.16 ENSMUSG00000035919 ENSMUST00000124076 Bbs9 protein_coding Interval_86029 chr19 35091746 35092305 + 0 NA Intergenic Intergenic -37503 ENSMUSG00000117973.1 ENSMUSG00000117973 ENSMUST00000238087 Gm50140 lincRNA Interval_10381 chr1 170160033 170161387 + 0 NA TTS (ENSMUSG00000026670.15) protein_coding-TTS (ENSMUSG00000026670.15) 14056 ENSMUSG00000026670.15 ENSMUSG00000026670 ENSMUST00000191690 Uap1 protein_coding Interval_47143 chr13 76263274 76263642 + 0 NA intron (ENSMUSG00000114242.1, intron 1 of 2) protein_coding-intron (ENSMUSG00000109228.2, intron 4 of 10) 7492 ENSMUSG00000114242.1 ENSMUSG00000114242 ENSMUST00000225095 Gm31219 antisense Interval_10733 chr1 173767224 173767692 + 0 NA promoter-TSS (ENSMUSG00000073489.6) protein_coding-promoter-TSS (ENSMUSG00000073489.6) -515 ENSMUSG00000073489.6 ENSMUSG00000073489 ENSMUST00000192414 Ifi204 protein_coding Interval_132591 chr5 146575570 146575856 + 0 NA exon (ENSMUSG00000094090.2, exon 1 of 1) processed_pseudogene-exon (ENSMUSG00000094090.2, exon 1 of 1) 825 ENSMUSG00000094090.2 ENSMUSG00000094090 ENSMUST00000178171 Gm8494 processed_pseudogene Interval_145591 chr7 35759776 35760047 + 0 NA Intergenic Intergenic 19257 ENSMUSG00000044452.10 ENSMUSG00000044452 ENSMUST00000206003 Zfp507 protein_coding Interval_144293 chr7 24335869 24336400 + 0 NA TTS (ENSMUSG00000088354.2) miRNA-TTS (ENSMUSG00000088354.2) 331 ENSMUSG00000088354.2 ENSMUSG00000088354 ENSMUST00000157729 Gm27592 miRNA Interval_14910 chr10 41015645 41016716 + 0 NA Intergenic Intergenic -19015 ENSMUSG00000111098.1 ENSMUSG00000111098 ENSMUST00000214667 Gm48057 lincRNA Interval_75032 chr17 61638362 61638725 + 0 NA Intergenic Intergenic 143089 ENSMUSG00000098123.1 ENSMUSG00000098123 ENSMUST00000182638 Gm4518 processed_pseudogene Interval_154216 chr8 13500054 13500263 + 0 NA Intergenic Intergenic -5668 ENSMUSG00000031451.6 ENSMUSG00000031451 ENSMUST00000033828 Gas6 protein_coding Interval_32251 chr11 106506930 106507123 + 0 NA intron (ENSMUSG00000040548.16, intron 9 of 10) protein_coding-intron (ENSMUSG00000040548.16, intron 10 of 11) 5781 ENSMUSG00000080540.2 ENSMUSG00000080540 ENSMUST00000116890 Gm22711 snoRNA Interval_148129 chr7 79394065 79395449 + 0 NA intron (ENSMUSG00000039187.16, intron 1 of 34) protein_coding-intron (ENSMUSG00000039187.16, intron 1 of 37) -7845 ENSMUSG00000039194.16 ENSMUSG00000039194 ENSMUST00000206695 Rlbp1 protein_coding Interval_43861 chr13 37674962 37675516 + 0 NA Intergenic Intergenic -8697 ENSMUSG00000114828.1 ENSMUSG00000114828 ENSMUST00000224151 AI463229 lincRNA Interval_56103 chr14 105802092 105803472 + 0 NA Intergenic Intergenic -14126 ENSMUSG00000092664.1 ENSMUSG00000092664 ENSMUST00000174923 Gm22406 miRNA Interval_20261 chr10 116501437 116501935 + 0 NA intron (ENSMUSG00000020166.15, intron 3 of 5) protein_coding-intron (ENSMUSG00000020166.15, intron 5 of 13) -2208 ENSMUSG00000020166.15 ENSMUSG00000020166 ENSMUST00000218744 Cnot2 protein_coding Interval_157285 chr8 69011887 69012073 + 0 NA Intergenic Intergenic -10297 ENSMUSG00000110594.1 ENSMUSG00000110594 ENSMUST00000212717 Gm33103 lincRNA Interval_34964 chr12 15808987 15809330 + 0 NA TTS (ENSMUSG00000020601.8) protein_coding-TTS (ENSMUSG00000020601.8) 7764 ENSMUSG00000020601.8 ENSMUSG00000020601 ENSMUST00000151100 Trib2 protein_coding Interval_107896 chr3 116653795 116654380 + 0 NA intron (ENSMUSG00000105103.1, intron 2 of 6) protein_coding-intron (ENSMUSG00000089911.4, intron 1 of 11) -9645 ENSMUSG00000106125.1 ENSMUSG00000106125 ENSMUST00000197000 4930512P04Rik lincRNA Interval_101321 chr2 180431636 180433047 + 0 NA Intergenic Intergenic -23993 ENSMUSG00000038963.15 ENSMUSG00000038963 ENSMUST00000128367 Slco4a1 protein_coding Interval_174022 chrX 130203733 130204133 + 0 NA intron (ENSMUSG00000034480.18, intron 23 of 26) protein_coding-intron (ENSMUSG00000034480.18, intron 23 of 26) 198286 ENSMUSG00000084047.1 ENSMUSG00000084047 ENSMUST00000120343 Gm14984 processed_pseudogene Interval_113607 chr4 56955902 56956647 + 0 NA TTS (ENSMUSG00000045589.7) protein_coding-TTS (ENSMUSG00000045589.7) -8850 ENSMUSG00000055296.14 ENSMUSG00000055296 ENSMUST00000155625 Tmem245 protein_coding Interval_27667 chr11 69382983 69383216 + 0 NA Intergenic Intergenic 12532 ENSMUSG00000044795.12 ENSMUSG00000044795 ENSMUST00000051620 Cyb5d1 protein_coding Interval_112153 chr4 34976807 34977240 + 0 NA intron (ENSMUSG00000073910.10, intron 3 of 3) protein_coding-intron (ENSMUSG00000073910.10, intron 3 of 3) 14803 ENSMUSG00000086792.1 ENSMUSG00000086792 ENSMUST00000144419 Gm12364 antisense Interval_137554 chr6 73169699 73170740 + 0 NA intron (ENSMUSG00000052861.13, intron 14 of 75) protein_coding-intron (ENSMUSG00000052861.13, intron 15 of 76) -28539 ENSMUSG00000065072.1 ENSMUSG00000065072 ENSMUST00000083138 Gm24533 snoRNA Interval_12666 chr10 4230656 4230878 + 0 NA Intergenic Intergenic -17653 ENSMUSG00000111266.1 ENSMUSG00000111266 ENSMUST00000213553 Gm30570 lincRNA Interval_45914 chr13 59217008 59217498 + 0 NA promoter-TSS (ENSMUSG00000114478.1) lincRNA-promoter-TSS (ENSMUSG00000114478.1) -81 ENSMUSG00000114478.1 ENSMUSG00000114478 ENSMUST00000225924 Gm34558 lincRNA Interval_115394 chr4 98535253 98535823 + 0 NA exon (ENSMUSG00000061859.17, exon 26 of 44) protein_coding-exon (ENSMUSG00000061859.17, exon 26 of 44) 22327 ENSMUSG00000094456.1 ENSMUSG00000094456 ENSMUST00000175382 Gm22625 miRNA Interval_62706 chr15 96376783 96377928 + 0 NA intron (ENSMUSG00000033237.19, intron 15 of 20) protein_coding-intron (ENSMUSG00000033237.19, intron 15 of 20) -1459 ENSMUSG00000033237.19 ENSMUSG00000033237 ENSMUST00000176739 Arid2 protein_coding Interval_118044 chr4 128586143 128586396 + 0 NA exon (ENSMUSG00000061894.15, exon 4 of 4) protein_coding-exon (ENSMUSG00000061894.15, exon 4 of 4) 23765 ENSMUSG00000061894.15 ENSMUSG00000061894 ENSMUST00000141040 Zscan20 protein_coding Interval_66153 chr16 31982984 31984755 + 0 NA exon (ENSMUSG00000022772.12, exon 3 of 10) protein_coding-exon (ENSMUSG00000022772.12, exon 3 of 10) 1760 ENSMUSG00000096112.1 ENSMUSG00000096112 ENSMUST00000180144 Gm26269 miRNA Interval_57315 chr15 8699406 8699638 + 0 NA intron (ENSMUSG00000005360.14, intron 2 of 4) protein_coding-intron (ENSMUSG00000005360.14, intron 2 of 9) 10887 ENSMUSG00000005360.14 ENSMUSG00000005360 ENSMUST00000126747 Slc1a3 protein_coding Interval_32535 chr11 108236968 108237488 + 0 NA intron (ENSMUSG00000050965.14, intron 2 of 2) protein_coding-intron (ENSMUSG00000050965.14, intron 2 of 16) 55378 ENSMUSG00000084978.1 ENSMUSG00000084978 ENSMUST00000153899 Gm11655 antisense Interval_130877 chr5 132967845 132968311 + 0 NA Intergenic Intergenic 166400 ENSMUSG00000088123.1 ENSMUSG00000088123 ENSMUST00000157498 Gm25722 misc_RNA Interval_109936 chr3 151975920 151976181 + 0 NA Intergenic Intergenic -2542 ENSMUSG00000104725.1 ENSMUSG00000104725 ENSMUST00000199226 Gm2860 processed_pseudogene Interval_145760 chr7 38112041 38113497 + 0 NA Intergenic Intergenic -13400 ENSMUSG00000002068.16 ENSMUSG00000002068 ENSMUST00000124979 Ccne1 protein_coding Interval_39615 chr12 91575190 91575639 + 0 NA intron (ENSMUSG00000020962.14, intron 3 of 8) protein_coding-intron (ENSMUSG00000020962.14, intron 3 of 8) -1842 ENSMUSG00000080365.1 ENSMUSG00000080365 ENSMUST00000116715 Gm25776 snoRNA Interval_47372 chr13 82186971 82187529 + 0 NA intron (ENSMUSG00000114461.1, intron 2 of 2) lincRNA-intron (ENSMUSG00000114461.1, intron 2 of 2) 97493 ENSMUSG00000114461.1 ENSMUSG00000114461 ENSMUST00000224753 Gm48155 lincRNA Interval_127918 chr5 109045610 109046026 + 0 NA exon (ENSMUSG00000091450.2, exon 6 of 6) protein_coding-exon (ENSMUSG00000091450.2, exon 6 of 6) 13751 ENSMUSG00000091450.2 ENSMUSG00000091450 ENSMUST00000233894 Vmn2r11 protein_coding Interval_123030 chr5 28717634 28717914 + 0 NA intron (ENSMUSG00000097726.7, intron 6 of 6) antisense-intron (ENSMUSG00000097726.7, intron 2 of 6) 140501 ENSMUSG00000104587.1 ENSMUSG00000104587 ENSMUST00000197020 Gm43161 TEC Interval_171101 chr9 114536276 114536959 + 0 NA intron (ENSMUSG00000079259.2, intron 1 of 3) protein_coding-intron (ENSMUSG00000079259.2, intron 1 of 3) 20920 ENSMUSG00000097821.2 ENSMUSG00000097821 ENSMUST00000238379 C130032M10Rik antisense Interval_126919 chr5 97128295 97128974 + 0 NA Intergenic Intergenic -14392 ENSMUSG00000104736.1 ENSMUSG00000104736 ENSMUST00000198559 Gm33609 lincRNA Interval_120335 chr4 147962657 147963060 + 0 NA Intergenic Intergenic 21963 ENSMUSG00000044496.6 ENSMUSG00000044496 ENSMUST00000103232 2510039O18Rik protein_coding Interval_44512 chr13 45547164 45548227 + 0 NA intron (ENSMUSG00000000253.13, intron 1 of 1) protein_coding-intron (ENSMUSG00000000253.13, intron 1 of 1) 1542 ENSMUSG00000000253.13 ENSMUSG00000000253 ENSMUST00000222227 Gmpr protein_coding Interval_144473 chr7 25351246 25351646 + 0 NA intron (ENSMUSG00000045039.9, intron 7 of 17) protein_coding-intron (ENSMUSG00000045039.9, intron 30 of 40) 5465 ENSMUSG00000045039.9 ENSMUSG00000045039 ENSMUST00000153077 Megf8 protein_coding Interval_117053 chr4 119246935 119248442 + 0 NA intron (ENSMUSG00000028641.16, intron 15 of 16) protein_coding-intron (ENSMUSG00000028641.16, intron 14 of 14) -7821 ENSMUSG00000066058.11 ENSMUSG00000066058 ENSMUST00000094823 Cldn19 protein_coding Interval_152983 chr7 140259659 140259979 + 0 NA intron (ENSMUSG00000054672.13, intron 4 of 12) protein_coding-intron (ENSMUSG00000054672.13, intron 3 of 4) -37865 ENSMUSG00000054672.13 ENSMUSG00000054672 ENSMUST00000211749 5830411N06Rik protein_coding Interval_91585 chr2 44096624 44098213 + 0 NA intron (ENSMUSG00000049744.15, intron 1 of 2) protein_coding-intron (ENSMUSG00000049744.15, intron 8 of 13) -32094 ENSMUSG00000085089.1 ENSMUSG00000085089 ENSMUST00000139948 Arhgap15os antisense Interval_27216 chr11 64183261 64183914 + 0 NA Intergenic Intergenic 19014 ENSMUSG00000087622.1 ENSMUSG00000087622 ENSMUST00000145095 Gm12290 lincRNA Interval_164585 chr9 39496280 39496769 + 0 NA Intergenic Intergenic -2529 ENSMUSG00000062649.6 ENSMUSG00000062649 ENSMUST00000216316 Olfr44 protein_coding Interval_140632 chr6 120219212 120219546 + 0 NA intron (ENSMUSG00000041372.10, intron 9 of 19) protein_coding-intron (ENSMUSG00000041372.10, intron 9 of 19) 75180 ENSMUSG00000041372.10 ENSMUSG00000041372 ENSMUST00000212457 B4galnt3 protein_coding Interval_104631 chr3 68964841 68965327 + 0 NA intron (ENSMUSG00000027778.15, intron 2 of 4) protein_coding-intron (ENSMUSG00000027778.15, intron 5 of 18) 39441 ENSMUSG00000027778.15 ENSMUSG00000027778 ENSMUST00000192467 Ift80 protein_coding Interval_84350 chr19 10289520 10290743 + 0 NA promoter-TSS (ENSMUSG00000118330.1) antisense-promoter-TSS (ENSMUSG00000118330.1) -795 ENSMUSG00000118330.1 ENSMUSG00000118330 ENSMUST00000237496 Gm30042 antisense Interval_105299 chr3 84673804 84674037 + 0 NA intron (ENSMUSG00000056498.13, intron 1 of 2) protein_coding-intron (ENSMUSG00000056498.13, intron 1 of 6) 7710 ENSMUSG00000056498.13 ENSMUSG00000056498 ENSMUST00000128344 Tmem154 protein_coding Interval_58866 chr15 39361963 39362485 + 0 NA intron (ENSMUSG00000037386.16, intron 3 of 25) protein_coding-intron (ENSMUSG00000037386.16, intron 3 of 26) -53646 ENSMUSG00000095297.1 ENSMUSG00000095297 ENSMUST00000102078 Gm25381 miRNA Interval_73671 chr17 42631211 42631589 + 0 NA Intergenic Intergenic -20005 ENSMUSG00000043972.8 ENSMUSG00000043972 ENSMUST00000068355 Opn5 protein_coding Interval_50564 chr14 15570393 15570611 + 0 NA Intergenic Intergenic 31521 ENSMUSG00000114941.1 ENSMUSG00000114941 ENSMUST00000223575 Gm47779 processed_pseudogene Interval_151031 chr7 118042909 118043595 + 0 NA Intergenic Intergenic 72004 ENSMUSG00000008683.16 ENSMUSG00000008683 ENSMUST00000128482 Rps15a protein_coding Interval_142953 chr6 147268298 147268814 + 0 NA Intergenic Intergenic -3281 ENSMUSG00000081023.1 ENSMUSG00000081023 ENSMUST00000118025 Gm15766 processed_pseudogene Interval_73493 chr17 38008168 38008412 + 0 NA Intergenic Intergenic -1357 ENSMUSG00000092390.1 ENSMUSG00000092390 ENSMUST00000173035 Gm20541 unprocessed_pseudogene Interval_16544 chr10 63506543 63507335 + 0 NA intron (ENSMUSG00000060843.11, intron 2 of 17) protein_coding-intron (ENSMUSG00000060843.11, intron 1 of 16) -85150 ENSMUSG00000048185.5 ENSMUSG00000048185 ENSMUST00000054760 Gm7075 protein_coding Interval_76082 chr17 74797044 74797893 + 0 NA intron (ENSMUSG00000024078.7, intron 5 of 13) protein_coding-intron (ENSMUSG00000024078.7, intron 12 of 19) 22443 ENSMUSG00000117444.1 ENSMUSG00000117444 ENSMUST00000234963 Gm50020 antisense Interval_99646 chr2 163899485 163900330 + 0 NA intron (ENSMUSG00000035226.5, intron 1 of 5) protein_coding-intron (ENSMUSG00000035226.5, intron 1 of 5) 18776 ENSMUSG00000035226.5 ENSMUSG00000035226 ENSMUST00000044734 Rims4 protein_coding Interval_108867 chr3 132851249 132852520 + 0 NA intron (ENSMUSG00000106230.1, intron 1 of 3) lincRNA-intron (ENSMUSG00000106230.1, intron 1 of 3) 9488 ENSMUSG00000106499.1 ENSMUSG00000106499 ENSMUST00000196299 Gm9403 processed_pseudogene Interval_61019 chr15 78809280 78809638 + 0 NA Intergenic Intergenic -6790 ENSMUSG00000033170.14 ENSMUSG00000033170 ENSMUST00000071115 Card10 protein_coding Interval_19431 chr10 99199814 99199998 + 0 NA Intergenic Intergenic -15296 ENSMUSG00000089994.1 ENSMUSG00000089994 ENSMUST00000160182 Gm16239 antisense Interval_71239 chr17 21506615 21506876 + 0 NA intron (ENSMUSG00000057409.7, intron 4 of 4) protein_coding-intron (ENSMUSG00000057409.7, intron 3 of 3) 17747 ENSMUSG00000057409.7 ENSMUSG00000057409 ENSMUST00000076664 Zfp53 protein_coding Interval_94610 chr2 92640368 92641219 + 0 NA Intergenic Intergenic 41086 ENSMUSG00000027221.5 ENSMUSG00000027221 ENSMUST00000065797 Chst1 protein_coding Interval_91059 chr2 34744507 34745231 + 0 NA intron (ENSMUSG00000026867.18, intron 1 of 3) protein_coding-intron (ENSMUSG00000026867.18, intron 1 of 25) -28797 ENSMUSG00000026864.13 ENSMUSG00000026864 ENSMUST00000129333 Hspa5 protein_coding Interval_49634 chr13 113699361 113699866 + 0 NA Intergenic Intergenic 27295 ENSMUSG00000114417.1 ENSMUSG00000114417 ENSMUST00000223766 Gm34586 lincRNA Interval_42635 chr13 17432378 17433062 + 0 NA intron (ENSMUSG00000055137.7, intron 9 of 13) protein_coding-intron (ENSMUSG00000055137.7, intron 9 of 13) -8070 ENSMUSG00000094665.1 ENSMUSG00000094665 ENSMUST00000179101 Gm24873 snRNA Interval_44293 chr13 43419927 43420120 + 0 NA intron (ENSMUSG00000038546.9, intron 8 of 13) protein_coding-intron (ENSMUSG00000038546.9, intron 8 of 13) 2489 ENSMUSG00000112942.1 ENSMUSG00000112942 ENSMUST00000220774 Gm47597 processed_pseudogene Interval_59271 chr15 50483032 50483535 + 0 NA Intergenic Intergenic 196385 ENSMUSG00000115478.1 ENSMUSG00000115478 ENSMUST00000227182 Gm49198 lincRNA Interval_124081 chr5 38158779 38160279 + 0 NA promoter-TSS (ENSMUSG00000029126.7) protein_coding-promoter-TSS (ENSMUSG00000029126.7) -56 ENSMUSG00000029126.7 ENSMUSG00000029126 ENSMUST00000201134 Nsg1 protein_coding Interval_3790 chr1 63100101 63101138 + 0 NA intron (ENSMUSG00000040865.15, intron 1 of 10) protein_coding-intron (ENSMUSG00000040865.15, intron 1 of 10) -14121 ENSMUSG00000084799.7 ENSMUSG00000084799 ENSMUST00000188602 Ino80dos lincRNA Interval_11529 chr1 182489800 182490808 + 0 NA exon (ENSMUSG00000026509.15, exon 2 of 6) protein_coding-exon (ENSMUSG00000026509.15, exon 2 of 6) 275 ENSMUSG00000102234.1 ENSMUSG00000102234 ENSMUST00000195868 Gm37885 antisense Interval_52720 chr14 48990766 48991242 + 0 NA Intergenic Intergenic 10832 ENSMUSG00000087754.1 ENSMUSG00000087754 ENSMUST00000157129 Gm23470 snRNA Interval_123556 chr5 33475619 33476060 + 0 NA Intergenic Intergenic -38375 ENSMUSG00000107248.1 ENSMUSG00000107248 ENSMUST00000200726 Gm43851 lincRNA Interval_91926 chr2 51545669 51547045 + 0 NA TTS (ENSMUSG00000084334.1) processed_pseudogene-TTS (ENSMUSG00000084334.1) 1382 ENSMUSG00000084334.1 ENSMUSG00000084334 ENSMUST00000120828 Gm13494 processed_pseudogene Interval_161304 chr8 119627758 119628435 + 0 NA intron (ENSMUSG00000045246.11, intron 2 of 3) protein_coding-intron (ENSMUSG00000045246.11, intron 2 of 2) 7250 ENSMUSG00000045246.11 ENSMUSG00000045246 ENSMUST00000061828 Kcng4 protein_coding Interval_116370 chr4 110397199 110398263 + 0 NA promoter-TSS (ENSMUSG00000061298.14) protein_coding-promoter-TSS (ENSMUSG00000061298.14) -110204 ENSMUSG00000028546.17 ENSMUSG00000028546 ENSMUST00000142722 Elavl4 protein_coding Interval_128220 chr5 111821123 111821448 + 0 NA Intergenic Intergenic 27898 ENSMUSG00000105376.4 ENSMUSG00000105376 ENSMUST00000200641 Gm36535 lincRNA Interval_84932 chr19 19079898 19080188 + 0 NA intron (ENSMUSG00000036192.15, intron 1 of 9) protein_coding-intron (ENSMUSG00000036192.15, intron 1 of 9) -78943 ENSMUSG00000036192.15 ENSMUSG00000036192 ENSMUST00000147907 Rorb protein_coding Interval_44431 chr13 44786419 44786855 + 0 NA intron (ENSMUSG00000038518.15, intron 2 of 4) protein_coding-intron (ENSMUSG00000038518.15, intron 2 of 18) 51646 ENSMUSG00000088189.1 ENSMUSG00000088189 ENSMUST00000157564 Gm22213 snoRNA Interval_10042 chr1 165311443 165312501 + 0 NA intron (ENSMUSG00000040836.15, intron 3 of 5) protein_coding-intron (ENSMUSG00000040836.15, intron 3 of 5) 16183 ENSMUSG00000040836.15 ENSMUSG00000040836 ENSMUST00000111450 Gpr161 protein_coding Interval_14471 chr10 34156523 34157177 + 0 NA intron (ENSMUSG00000039497.8, intron 3 of 4) protein_coding-intron (ENSMUSG00000039497.8, intron 4 of 5) 19395 ENSMUSG00000039497.8 ENSMUSG00000039497 ENSMUST00000216194 Dse protein_coding Interval_52399 chr14 45611626 45612229 + 0 NA TTS (ENSMUSG00000115148.1) TEC-TTS (ENSMUSG00000115148.1) 2139 ENSMUSG00000115148.1 ENSMUSG00000115148 ENSMUST00000227258 Gm49125 TEC Interval_10119 chr1 165911204 165911951 + 0 NA intron (ENSMUSG00000026565.18, intron 5 of 16) protein_coding-intron (ENSMUSG00000026565.18, intron 5 of 14) -30041 ENSMUSG00000099008.1 ENSMUSG00000099008 ENSMUST00000184037 Gm17976 processed_pseudogene Interval_166281 chr9 58002707 58004193 + 0 NA intron (ENSMUSG00000097604.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000097604.1, intron 1 of 1) 5409 ENSMUSG00000097604.1 ENSMUSG00000097604 ENSMUST00000181289 Gm17322 lincRNA Interval_49591 chr13 113268527 113268742 + 0 NA Intergenic Intergenic -24525 ENSMUSG00000021763.17 ENSMUSG00000021763 ENSMUST00000135096 BC067074 protein_coding Interval_31696 chr11 102303594 102304368 + 0 NA TTS (ENSMUSG00000020923.17) protein_coding-TTS (ENSMUSG00000020923.17) -10537 ENSMUSG00000059995.12 ENSMUSG00000059995 ENSMUST00000107132 Atxn7l3 protein_coding Interval_53239 chr14 55509762 55511145 + 0 NA promoter-TSS (ENSMUSG00000022212.15) protein_coding-promoter-TSS (ENSMUSG00000022212.15) -1532 ENSMUSG00000022212.15 ENSMUSG00000022212 ENSMUST00000171643 Cpne6 protein_coding Interval_132484 chr5 145231183 145232351 + 0 NA promoter-TSS (ENSMUSG00000007812.16) protein_coding-promoter-TSS (ENSMUSG00000007812.16) 52 ENSMUSG00000007812.16 ENSMUSG00000007812 ENSMUST00000085661 Zfp655 protein_coding Interval_157893 chr8 75255461 75256037 + 0 NA Intergenic Intergenic 19915 ENSMUSG00000110515.1 ENSMUSG00000110515 ENSMUST00000212828 Gm9644 processed_pseudogene Interval_133162 chr5 150259335 150260140 + 0 NA promoter-TSS (ENSMUSG00000056602.12) protein_coding-promoter-TSS (ENSMUSG00000056602.12) 15874 ENSMUSG00000107082.1 ENSMUSG00000107082 ENSMUST00000201709 Gm36378 processed_pseudogene Interval_29630 chr11 85611518 85612153 + 0 NA intron (ENSMUSG00000059439.15, intron 13 of 14) protein_coding-intron (ENSMUSG00000059439.15, intron 23 of 24) 107909 ENSMUSG00000086199.7 ENSMUSG00000086199 ENSMUST00000146806 Bcas3os1 antisense Interval_44580 chr13 46393629 46394050 + 0 NA Intergenic Intergenic -27983 ENSMUSG00000038132.6 ENSMUSG00000038132 ENSMUST00000225890 Rbm24 protein_coding Interval_85448 chr19 26613092 26614123 + 0 NA intron (ENSMUSG00000024921.17, intron 1 of 32) protein_coding-intron (ENSMUSG00000024921.17, intron 1 of 32) 9803 ENSMUSG00000093628.1 ENSMUSG00000093628 ENSMUST00000177453 Gm20616 antisense Interval_169974 chr9 103350469 103352690 + 0 NA Intergenic Intergenic 7643 ENSMUSG00000032555.10 ENSMUSG00000032555 ENSMUST00000185972 Topbp1 protein_coding Interval_119951 chr4 141090224 141090632 + 0 NA exon (ENSMUSG00000045004.3, exon 3 of 15) protein_coding-exon (ENSMUSG00000045004.3, exon 3 of 15) 5564 ENSMUSG00000082246.1 ENSMUSG00000082246 ENSMUST00000117116 Gm13047 processed_pseudogene Interval_86172 chr19 37531078 37531475 + 0 NA intron (ENSMUSG00000053799.8, intron 1 of 22) protein_coding-intron (ENSMUSG00000053799.8, intron 1 of 22) 10397 ENSMUSG00000053799.8 ENSMUSG00000053799 ENSMUST00000238817 Exoc6 protein_coding Interval_57670 chr15 14628645 14629073 + 0 NA Intergenic Intergenic 106425 ENSMUSG00000092919.2 ENSMUSG00000092919 ENSMUST00000175178 Gm24080 miRNA Interval_114896 chr4 86772469 86773283 + 0 NA intron (ENSMUSG00000038024.17, intron 1 of 32) protein_coding-intron (ENSMUSG00000038024.17, intron 1 of 25) -1379 ENSMUSG00000038024.17 ENSMUSG00000038024 ENSMUST00000128710 Dennd4c protein_coding Interval_38593 chr12 80324800 80325573 + 0 NA Intergenic Intergenic 51506 ENSMUSG00000049106.7 ENSMUSG00000049106 ENSMUST00000218498 Dcaf5 protein_coding Interval_125660 chr5 73117711 73118036 + 0 NA TTS (ENSMUSG00000070733.13) protein_coding-TTS (ENSMUSG00000070733.13) -39141 ENSMUSG00000086376.2 ENSMUSG00000086376 ENSMUST00000146728 1700071G01Rik antisense Interval_110283 chr3 155755591 155755942 + 0 NA promoter-TSS (ENSMUSG00000103981.1) processed_pseudogene-promoter-TSS (ENSMUSG00000103981.1) -526 ENSMUSG00000103981.1 ENSMUSG00000103981 ENSMUST00000193016 Gm37449 processed_pseudogene Interval_134484 chr6 29059867 29060344 + 0 NA promoter-TSS (ENSMUSG00000059201.12) protein_coding-promoter-TSS (ENSMUSG00000059201.12) -5357 ENSMUSG00000059201.12 ENSMUSG00000059201 ENSMUST00000169505 Lep protein_coding Interval_102664 chr3 29118292 29118936 + 0 NA intron (ENSMUSG00000063600.14, intron 1 of 11) protein_coding-intron (ENSMUSG00000063600.14, intron 1 of 12) 36314 ENSMUSG00000063600.14 ENSMUSG00000063600 ENSMUST00000140288 Egfem1 protein_coding Interval_55937 chr14 102973676 102973908 + 0 NA Intergenic Intergenic 8840 ENSMUSG00000092901.1 ENSMUSG00000092901 ENSMUST00000175160 Mir5130 miRNA Interval_126559 chr5 90256066 90256451 + 0 NA intron (ENSMUSG00000055204.15, intron 24 of 26) protein_coding-intron (ENSMUSG00000055204.15, intron 24 of 33) -40236 ENSMUSG00000035505.14 ENSMUSG00000035505 ENSMUST00000148480 Cox18 protein_coding Interval_99252 chr2 158379596 158380188 + 0 NA TTS (ENSMUSG00000064585.1) snoRNA-TTS (ENSMUSG00000064585.1) 358 ENSMUSG00000064585.1 ENSMUSG00000064585 ENSMUST00000082651 Gm25129 snoRNA Interval_44669 chr13 47029951 47030899 + 0 NA intron (ENSMUSG00000021376.11, intron 6 of 6) protein_coding-intron (ENSMUSG00000021376.11, intron 6 of 8) -1493 ENSMUSG00000021376.11 ENSMUSG00000021376 ENSMUST00000124948 Tpmt protein_coding Interval_48277 chr13 97607006 97607781 + 0 NA Intergenic Intergenic -2143 ENSMUSG00000114599.1 ENSMUSG00000114599 ENSMUST00000225459 Gm48070 processed_pseudogene Interval_71246 chr17 21551528 21551984 + 0 NA intron (ENSMUSG00000051341.6, intron 2 of 4) protein_coding-intron (ENSMUSG00000051341.6, intron 2 of 4) -15252 ENSMUSG00000067931.6 ENSMUSG00000067931 ENSMUST00000088787 Zfp948 protein_coding Interval_153400 chr7 144425179 144426213 + 0 NA Intergenic Intergenic -18763 ENSMUSG00000085745.1 ENSMUSG00000085745 ENSMUST00000125355 Gm14372 antisense Interval_146334 chr7 45383652 45383874 + 0 NA TTS (ENSMUSG00000063511.11) protein_coding-TTS (ENSMUSG00000063511.11) -4768 ENSMUSG00000084519.1 ENSMUSG00000084519 ENSMUST00000122570 Gm22478 snoRNA Interval_123013 chr5 28451325 28451583 + 0 NA Intergenic Intergenic -15530 ENSMUSG00000097726.7 ENSMUSG00000097726 ENSMUST00000181202 9530036O11Rik antisense Interval_115927 chr4 106329005 106330217 + 0 NA intron (ENSMUSG00000028514.15, intron 1 of 67) protein_coding-intron (ENSMUSG00000028514.15, intron 1 of 67) 13398 ENSMUSG00000028514.15 ENSMUSG00000028514 ENSMUST00000150521 Usp24 protein_coding Interval_90613 chr2 31471731 31472894 + 0 NA intron (ENSMUSG00000076441.9, intron 1 of 15) protein_coding-intron (ENSMUSG00000076441.9, intron 1 of 15) -28414 ENSMUSG00000076441.9 ENSMUSG00000076441 ENSMUST00000130195 Ass1 protein_coding Interval_103306 chr3 38407419 38407590 + 0 NA Intergenic Intergenic 12647 ENSMUSG00000106485.1 ENSMUSG00000106485 ENSMUST00000200199 3830422I06Rik TEC Interval_16022 chr10 60170530 60170935 + 0 NA Intergenic Intergenic 23507 ENSMUSG00000057337.13 ENSMUSG00000057337 ENSMUST00000167915 Chst3 protein_coding Interval_53912 chr14 63353547 63354646 + 0 NA Intergenic Intergenic 22322 ENSMUSG00000014453.4 ENSMUSG00000014453 ENSMUST00000224965 Blk protein_coding Interval_132099 chr5 142761252 142761470 + 0 NA intron (ENSMUSG00000039477.16, intron 10 of 24) protein_coding-intron (ENSMUSG00000039477.16, intron 14 of 15) 4661 ENSMUSG00000039477.16 ENSMUSG00000039477 ENSMUST00000198181 Tnrc18 protein_coding Interval_37338 chr12 65214642 65214857 + 0 NA Intergenic Intergenic -1248 ENSMUSG00000113233.1 ENSMUSG00000113233 ENSMUST00000222636 Gm31063 lincRNA Interval_98326 chr2 151513597 151513803 + 0 NA Intergenic Intergenic 11373 ENSMUSG00000027455.16 ENSMUSG00000027455 ENSMUST00000139229 Nsfl1c protein_coding Interval_47210 chr13 78122601 78122987 + 0 NA TTS (ENSMUSG00000114401.1) antisense-TTS (ENSMUSG00000114401.1) 1724 ENSMUSG00000114622.1 ENSMUSG00000114622 ENSMUST00000225009 Gm18990 processed_pseudogene Interval_60753 chr15 76537807 76539197 + 0 NA promoter-TSS (ENSMUSG00000022560.9) protein_coding-promoter-TSS (ENSMUSG00000022560.9) -46 ENSMUSG00000022559.8 ENSMUSG00000022559 ENSMUST00000229273 Fbxl6 protein_coding Interval_27152 chr11 63404576 63405163 + 0 NA Intergenic Intergenic -8300 ENSMUSG00000085113.1 ENSMUSG00000085113 ENSMUST00000151765 B130011K05Rik lincRNA Interval_111175 chr4 13930243 13930712 + 0 NA intron (ENSMUSG00000086927.1, intron 2 of 2) lincRNA-intron (ENSMUSG00000086927.1, intron 2 of 2) 64716 ENSMUSG00000086927.1 ENSMUSG00000086927 ENSMUST00000130582 Gm11823 lincRNA Interval_49459 chr13 112218465 112219047 + 0 NA promoter-TSS (ENSMUSG00000104438.1) TEC-promoter-TSS (ENSMUSG00000104438.1) -437 ENSMUSG00000104438.1 ENSMUSG00000104438 ENSMUST00000192356 Gm37427 TEC Interval_26300 chr11 55945321 55945513 + 0 NA intron (ENSMUSG00000086020.1, intron 1 of 4) antisense-intron (ENSMUSG00000086020.1, intron 1 of 4) 95593 ENSMUSG00000037393.2 ENSMUSG00000037393 ENSMUST00000037682 Nmur2 protein_coding Interval_92689 chr2 62654614 62655001 + 0 NA Intergenic Intergenic -8552 ENSMUSG00000026896.14 ENSMUSG00000026896 ENSMUST00000175964 Ifih1 protein_coding Interval_48384 chr13 98648190 98648952 + 0 NA Intergenic Intergenic -11161 ENSMUSG00000046082.4 ENSMUSG00000046082 ENSMUST00000050389 Tmem174 protein_coding Interval_96383 chr2 122081115 122081991 + 0 NA intron (ENSMUSG00000033396.13, intron 20 of 39) protein_coding-intron (ENSMUSG00000033396.13, intron 20 of 39) 36822 ENSMUSG00000033396.13 ENSMUSG00000033396 ENSMUST00000135847 Spg11 protein_coding Interval_121792 chr5 8266260 8266627 + 0 NA intron (ENSMUSG00000040537.17, intron 3 of 4) protein_coding-intron (ENSMUSG00000040537.17, intron 3 of 28) 23720 ENSMUSG00000088103.1 ENSMUSG00000088103 ENSMUST00000157478 Gm23993 snoRNA Interval_46672 chr13 68581162 68582794 + 0 NA promoter-TSS (ENSMUSG00000021532.11) protein_coding-promoter-TSS (ENSMUSG00000021532.11) 126 ENSMUSG00000034617.7 ENSMUSG00000034617 ENSMUST00000221800 Mtrr protein_coding Interval_85720 chr19 30023266 30023670 + 0 NA Intergenic Intergenic 19678 ENSMUSG00000024815.5 ENSMUSG00000024815 ENSMUST00000025727 Trpd52l3 protein_coding Interval_27889 chr11 70646508 70648089 + 0 NA promoter-TSS (ENSMUSG00000014606.14) protein_coding-promoter-TSS (ENSMUSG00000014606.14) -320 ENSMUSG00000014606.14 ENSMUSG00000014606 ENSMUST00000136383 Slc25a11 protein_coding Interval_48070 chr13 95751963 95752613 + 0 NA intron (ENSMUSG00000021676.10, intron 3 of 6) protein_coding-intron (ENSMUSG00000021676.10, intron 3 of 35) 15705 ENSMUSG00000118436.1 ENSMUSG00000118436 ENSMUST00000238548 Gm32880 antisense Interval_174774 chrX 166468938 166469228 + 0 NA intron (ENSMUSG00000079316.10, intron 1 of 4) protein_coding-intron (ENSMUSG00000079316.10, intron 1 of 4) 6352 ENSMUSG00000079316.10 ENSMUSG00000079316 ENSMUST00000149315 Rab9 protein_coding Interval_160922 chr8 115065433 115065955 + 0 NA intron (ENSMUSG00000004637.15, intron 8 of 8) protein_coding-intron (ENSMUSG00000004637.15, intron 8 of 8) -12781 ENSMUSG00000088428.1 ENSMUSG00000088428 ENSMUST00000157803 Gm22556 rRNA Interval_92042 chr2 52846600 52846800 + 0 NA Intergenic Intergenic -11160 ENSMUSG00000036053.17 ENSMUSG00000036053 ENSMUST00000050719 Fmnl2 protein_coding Interval_134887 chr6 33170078 33170974 + 0 NA Intergenic Intergenic 77573 ENSMUSG00000082217.1 ENSMUSG00000082217 ENSMUST00000122048 Gm1401 processed_pseudogene Interval_56919 chr14 123314604 123314940 + 0 NA intron (ENSMUSG00000000197.8, intron 24 of 29) protein_coding-intron (ENSMUSG00000000197.8, intron 26 of 43) 74598 ENSMUSG00000115674.1 ENSMUSG00000115674 ENSMUST00000227636 Gm49297 TEC Interval_103710 chr3 51830676 51831023 + 0 NA promoter-TSS (ENSMUSG00000103284.1) TEC-promoter-TSS (ENSMUSG00000103284.1) -444 ENSMUSG00000103284.1 ENSMUSG00000103284 ENSMUST00000193469 3110080O07Rik TEC Interval_138204 chr6 86233744 86234117 + 0 NA intron (ENSMUSG00000029999.14, intron 2 of 5) protein_coding-intron (ENSMUSG00000029999.14, intron 2 of 5) 22336 ENSMUSG00000029999.14 ENSMUSG00000029999 ENSMUST00000194449 Tgfa protein_coding Interval_92074 chr2 53006941 53007869 + 0 NA intron (ENSMUSG00000036053.17, intron 1 of 26) protein_coding-intron (ENSMUSG00000036053.17, intron 1 of 26) 149545 ENSMUSG00000036053.17 ENSMUSG00000036053 ENSMUST00000050719 Fmnl2 protein_coding Interval_139378 chr6 99632309 99633121 + 0 NA promoter-TSS (ENSMUSG00000030068.4) protein_coding-promoter-TSS (ENSMUSG00000030068.4) -339 ENSMUSG00000030068.4 ENSMUSG00000030068 ENSMUST00000176255 Gm20696 protein_coding Interval_69687 chr16 95561926 95562192 + 0 NA intron (ENSMUSG00000040732.20, intron 1 of 10) protein_coding-intron (ENSMUSG00000040732.20, intron 1 of 10) -31694 ENSMUSG00000040732.20 ENSMUSG00000040732 ENSMUST00000121809 Erg protein_coding Interval_40884 chr12 109073055 109073674 + 0 NA Intergenic Intergenic -19589 ENSMUSG00000040867.13 ENSMUSG00000040867 ENSMUST00000185745 Begain protein_coding Interval_598 chr1 8533747 8534413 + 0 NA intron (ENSMUSG00000025909.16, intron 15 of 20) protein_coding-intron (ENSMUSG00000025909.16, intron 11 of 16) -2767 ENSMUSG00000102253.1 ENSMUSG00000102253 ENSMUST00000194602 Gm38259 TEC Interval_16600 chr10 64878171 64878735 + 0 NA intron (ENSMUSG00000060843.11, intron 15 of 17) protein_coding-intron (ENSMUSG00000060843.11, intron 14 of 16) 241914 ENSMUSG00000100528.1 ENSMUSG00000100528 ENSMUST00000187710 Gm28881 lincRNA Interval_7363 chr1 130502320 130502882 + 0 NA intron (ENSMUSG00000085526.1, intron 1 of 4) antisense-intron (ENSMUSG00000085526.1, intron 1 of 4) 28858 ENSMUSG00000103751.1 ENSMUSG00000103751 ENSMUST00000193111 Gm37283 TEC Interval_91371 chr2 38339066 38341207 + 0 NA promoter-TSS (ENSMUSG00000000247.11) protein_coding-promoter-TSS (ENSMUSG00000000247.11) 8180 ENSMUSG00000098383.1 ENSMUSG00000098383 ENSMUST00000184325 Gm27197 antisense Interval_154081 chr8 12535427 12537498 + 0 NA Intergenic Intergenic 33563 ENSMUSG00000109582.1 ENSMUSG00000109582 ENSMUST00000211062 4933439N14Rik lincRNA Interval_58523 chr15 35518365 35518904 + 0 NA intron (ENSMUSG00000037646.10, intron 17 of 28) protein_coding-intron (ENSMUSG00000037646.10, intron 17 of 61) 31234 ENSMUSG00000089133.1 ENSMUSG00000089133 ENSMUST00000158508 Gm24771 snoRNA Interval_7062 chr1 124971874 124972864 + 0 NA Intergenic Intergenic -126330 ENSMUSG00000036815.17 ENSMUSG00000036815 ENSMUST00000187286 Dpp10 protein_coding Interval_93483 chr2 73454285 73455524 + 0 NA promoter-TSS (ENSMUSG00000075284.10) protein_coding-promoter-TSS (ENSMUSG00000075284.10) -2194 ENSMUSG00000075284.10 ENSMUSG00000075284 ENSMUST00000129594 Wipf1 protein_coding Interval_16188 chr10 61325070 61326591 + 0 NA intron (ENSMUSG00000020092.9, intron 3 of 3) protein_coding-intron (ENSMUSG00000020092.9, intron 18 of 19) 16000 ENSMUSG00000061488.5 ENSMUSG00000061488 ENSMUST00000075382 Rpl27a-ps1 processed_pseudogene Interval_38495 chr12 79602923 79603111 + 0 NA intron (ENSMUSG00000059060.15, intron 1 of 2) protein_coding-intron (ENSMUSG00000059060.15, intron 7 of 10) 275664 ENSMUSG00000059060.15 ENSMUSG00000059060 ENSMUST00000221257 Rad51b protein_coding Interval_111850 chr4 31963221 31964670 + 0 NA promoter-TSS (ENSMUSG00000028284.13) protein_coding-promoter-TSS (ENSMUSG00000028284.13) -21722 ENSMUSG00000028284.13 ENSMUSG00000028284 ENSMUST00000131310 Map3k7 protein_coding Interval_18278 chr10 84526503 84527205 + 0 NA exon (ENSMUSG00000046841.5, exon 2 of 2) protein_coding-exon (ENSMUSG00000046841.5, exon 2 of 2) 7182 ENSMUSG00000046841.5 ENSMUSG00000046841 ENSMUST00000167671 Ckap4 protein_coding Interval_81222 chr18 56594283 56595263 + 0 NA TTS (ENSMUSG00000032900.15) protein_coding-TTS (ENSMUSG00000032900.15) 4031 ENSMUSG00000032900.15 ENSMUSG00000032900 ENSMUST00000235602 Tex43 protein_coding Interval_7179 chr1 127500183 127500647 + 0 NA promoter-TSS (ENSMUSG00000026347.13) protein_coding-promoter-TSS (ENSMUSG00000026347.13) 93639 ENSMUSG00000103390.1 ENSMUSG00000103390 ENSMUST00000195573 Gm38301 TEC Interval_65109 chr16 19475674 19475993 + 0 NA Intergenic Intergenic -7861 ENSMUSG00000056822.4 ENSMUSG00000056822 ENSMUST00000074739 Olfr166 protein_coding Interval_162681 chr9 7783534 7784063 + 0 NA promoter-TSS (ENSMUSG00000093615.1) miRNA-promoter-TSS (ENSMUSG00000093615.1) -592 ENSMUSG00000093615.1 ENSMUSG00000093615 ENSMUST00000175907 Mir5618 miRNA Interval_72962 chr17 33832285 33832506 + 0 NA intron (ENSMUSG00000041881.13, intron 2 of 2) protein_coding-intron (ENSMUSG00000041881.13, intron 3 of 3) 7782 ENSMUSG00000041881.13 ENSMUSG00000041881 ENSMUST00000173946 Ndufa7 protein_coding Interval_50526 chr14 14659080 14660162 + 0 NA exon (ENSMUSG00000114628.1, exon 1 of 1) processed_pseudogene-exon (ENSMUSG00000114628.1, exon 1 of 1) 513 ENSMUSG00000114628.1 ENSMUSG00000114628 ENSMUST00000226083 Gm19018 processed_pseudogene Interval_94766 chr2 94143079 94143371 + 0 NA intron (ENSMUSG00000027195.10, intron 1 of 2) protein_coding-intron (ENSMUSG00000027195.10, intron 1 of 10) 40905 ENSMUSG00000093033.1 ENSMUSG00000093033 ENSMUST00000175292 Gm23630 miRNA Interval_155491 chr8 33892168 33892483 + 0 NA promoter-TSS (ENSMUSG00000031586.17) protein_coding-promoter-TSS (ENSMUSG00000031586.17) -6578 ENSMUSG00000098166.1 ENSMUSG00000098166 ENSMUST00000182843 Gm26978 sense_intronic Interval_127746 chr5 107288434 107289741 + 0 NA intron (ENSMUSG00000029287.14, intron 1 of 6) protein_coding-intron (ENSMUSG00000029287.14, intron 1 of 16) 508 ENSMUSG00000029287.14 ENSMUSG00000029287 ENSMUST00000146591 Tgfbr3 protein_coding Interval_53439 chr14 57524741 57526224 + 0 NA exon (ENSMUSG00000050222.11, exon 2 of 3) protein_coding-exon (ENSMUSG00000050222.11, exon 2 of 3) 705 ENSMUSG00000050222.11 ENSMUSG00000050222 ENSMUST00000089494 Il17d protein_coding Interval_118570 chr4 132565250 132565579 + 0 NA intron (ENSMUSG00000056529.7, intron 1 of 1) protein_coding-intron (ENSMUSG00000056529.7, intron 1 of 1) 1347 ENSMUSG00000056529.7 ENSMUSG00000056529 ENSMUST00000070690 Ptafr protein_coding Interval_120405 chr4 148405112 148406095 + 0 NA Intergenic Intergenic 37882 ENSMUSG00000064648.2 ENSMUSG00000064648 ENSMUST00000082714 Gm23303 snRNA Interval_54896 chr14 76084317 76084939 + 0 NA Intergenic Intergenic 26132 ENSMUSG00000022008.4 ENSMUSG00000022008 ENSMUST00000022585 Gpalpp1 protein_coding Interval_16368 chr10 62516675 62518074 + 0 NA intron (ENSMUSG00000020077.14, intron 2 of 3) protein_coding-intron (ENSMUSG00000020077.14, intron 2 of 3) 10051 ENSMUSG00000020077.14 ENSMUSG00000020077 ENSMUST00000162956 Srgn protein_coding Interval_141506 chr6 128753648 128755071 + 0 NA Intergenic Intergenic 9715 ENSMUSG00000107866.1 ENSMUSG00000107866 ENSMUST00000203128 Gm43907 processed_pseudogene Interval_124837 chr5 56128795 56130087 + 0 NA Intergenic Intergenic -27897 ENSMUSG00000105685.1 ENSMUSG00000105685 ENSMUST00000198120 Gm43315 processed_pseudogene Interval_145005 chr7 29382324 29383793 + 0 NA intron (ENSMUSG00000030583.16, intron 9 of 22) protein_coding-intron (ENSMUSG00000030583.16, intron 9 of 22) -5453 ENSMUSG00000030583.16 ENSMUSG00000030583 ENSMUST00000183085 Sipa1l3 protein_coding Interval_84138 chr19 7454582 7455256 + 0 NA intron (ENSMUSG00000024758.15, intron 1 of 6) protein_coding-intron (ENSMUSG00000024758.15, intron 2 of 7) 28348 ENSMUSG00000024758.15 ENSMUSG00000024758 ENSMUST00000235593 Rtn3 protein_coding Interval_141681 chr6 133302133 133302766 + 0 NA Intergenic Intergenic -7480 ENSMUSG00000107625.1 ENSMUSG00000107625 ENSMUST00000203547 Gm34149 unprocessed_pseudogene Interval_85789 chr19 31330110 31330298 + 0 NA intron (ENSMUSG00000052920.16, intron 2 of 17) protein_coding-intron (ENSMUSG00000052920.16, intron 2 of 17) 217658 ENSMUSG00000118011.1 ENSMUSG00000118011 ENSMUST00000235353 Gm50266 processed_pseudogene Interval_103938 chr3 55151962 55152791 + 0 NA intron (ENSMUSG00000048655.17, intron 3 of 7) protein_coding-intron (ENSMUSG00000048655.17, intron 4 of 7) 10058 ENSMUSG00000080590.1 ENSMUSG00000080590 ENSMUST00000116940 Gm22029 miRNA Interval_122541 chr5 23692790 23693270 + 0 NA Intergenic Intergenic -17484 ENSMUSG00000105565.1 ENSMUSG00000105565 ENSMUST00000196851 Gm43566 sense_intronic Interval_148613 chr7 83297409 83298253 + 0 NA Intergenic Intergenic 63290 ENSMUSG00000109335.1 ENSMUSG00000109335 ENSMUST00000208773 Gm44845 processed_pseudogene Interval_47280 chr13 80596440 80597137 + 0 NA Intergenic Intergenic 103779 ENSMUSG00000114528.1 ENSMUSG00000114528 ENSMUST00000223876 Gm46388 processed_pseudogene Interval_138320 chr6 87186215 87187663 + 0 NA intron (ENSMUSG00000033420.12, intron 16 of 16) protein_coding-intron (ENSMUSG00000033420.12, intron 16 of 17) -12930 ENSMUSG00000107436.1 ENSMUSG00000107436 ENSMUST00000204055 Gm44416 TEC Interval_131529 chr5 137759892 137760583 + 0 NA TTS (ENSMUSG00000029723.16) protein_coding-TTS (ENSMUSG00000029723.16) 2092 ENSMUSG00000029723.16 ENSMUSG00000029723 ENSMUST00000138698 Tsc22d4 protein_coding Interval_115866 chr4 105322677 105323910 + 0 NA Intergenic Intergenic 51653 ENSMUSG00000081819.1 ENSMUSG00000081819 ENSMUST00000118507 Gm12722 processed_pseudogene Interval_31535 chr11 101225917 101226867 + 0 NA promoter-TSS (ENSMUSG00000006920.14) protein_coding-promoter-TSS (ENSMUSG00000006920.14) -16987 ENSMUSG00000006920.14 ENSMUSG00000006920 ENSMUST00000151291 Ezh1 protein_coding Interval_65090 chr16 18954837 18955353 + 0 NA intron (ENSMUSG00000022702.16, intron 10 of 11) protein_coding-intron (ENSMUSG00000022702.16, intron 23 of 24) -10430 ENSMUSG00000083658.1 ENSMUSG00000083658 ENSMUST00000120082 Gm15798 processed_pseudogene Interval_8637 chr1 145523671 145524944 + 0 NA Intergenic Intergenic -197616 ENSMUSG00000103055.1 ENSMUSG00000103055 ENSMUST00000194549 Gm38269 TEC Interval_125032 chr5 63970692 63971125 + 0 NA Intergenic Intergenic 19963 ENSMUSG00000106076.1 ENSMUSG00000106076 ENSMUST00000199444 Gm43840 processed_pseudogene Interval_129445 chr5 120204281 120204736 + 0 NA Intergenic Intergenic 28783 ENSMUSG00000029594.12 ENSMUSG00000029594 ENSMUST00000202788 Rbm19 protein_coding Interval_30436 chr11 94344655 94345394 + 0 NA intron (ENSMUSG00000020865.16, intron 30 of 30) protein_coding-intron (ENSMUSG00000020865.16, intron 30 of 30) 11571 ENSMUSG00000020864.13 ENSMUSG00000020864 ENSMUST00000124087 Ankrd40 protein_coding Interval_60585 chr15 75444896 75445313 + 0 NA Intergenic Intergenic -4353 ENSMUSG00000093626.1 ENSMUSG00000093626 ENSMUST00000177479 Ly6l protein_coding Interval_123431 chr5 32472081 32473224 + 0 NA intron (ENSMUSG00000014956.15, intron 1 of 3) protein_coding-intron (ENSMUSG00000014956.15, intron 1 of 7) 5457 ENSMUSG00000107083.1 ENSMUSG00000107083 ENSMUST00000201398 Gm43313 TEC Interval_130888 chr5 133585337 133585633 + 0 NA intron (ENSMUSG00000105227.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000105227.1, intron 1 of 1) 12921 ENSMUSG00000105227.1 ENSMUSG00000105227 ENSMUST00000196125 Gm36667 lincRNA Interval_96050 chr2 119460826 119461330 + 0 NA intron (ENSMUSG00000034154.15, intron 1 of 27) protein_coding-intron (ENSMUSG00000034154.15, intron 1 of 35) -21398 ENSMUSG00000034154.15 ENSMUSG00000034154 ENSMUST00000138707 Ino80 protein_coding Interval_8944 chr1 152572613 152574224 + 0 NA intron (ENSMUSG00000026482.13, intron 4 of 5) protein_coding-intron (ENSMUSG00000026482.13, intron 3 of 17) -20374 ENSMUSG00000026482.13 ENSMUSG00000026482 ENSMUST00000149536 Rgl1 protein_coding Interval_93795 chr2 76951817 76952917 + 0 NA intron (ENSMUSG00000051747.15, intron 17 of 312) protein_coding-intron (ENSMUSG00000051747.15, intron 16 of 190) 70329 ENSMUSG00000044033.16 ENSMUSG00000044033 ENSMUST00000111833 Ccdc141 protein_coding Interval_104417 chr3 65469084 65470300 + 0 NA Intergenic Intergenic 25343 ENSMUSG00000103513.1 ENSMUSG00000103513 ENSMUST00000193896 Gm34780 TEC Interval_142836 chr6 146317136 146317482 + 0 NA intron (ENSMUSG00000030287.15, intron 31 of 55) protein_coding-intron (ENSMUSG00000030287.15, intron 32 of 56) -46329 ENSMUSG00000107801.1 ENSMUSG00000107801 ENSMUST00000203251 Gm44086 TEC Interval_23177 chr11 20357616 20358346 + 0 NA Intergenic Intergenic -21968 ENSMUSG00000078965.5 ENSMUSG00000078965 ENSMUST00000180654 Gm12033 processed_pseudogene Interval_156663 chr8 56581208 56582007 + 0 NA intron (ENSMUSG00000038206.13, intron 3 of 3) protein_coding-intron (ENSMUSG00000038206.13, intron 3 of 5) -6313 ENSMUSG00000038206.13 ENSMUSG00000038206 ENSMUST00000211294 Fbxo8 protein_coding Interval_153639 chr8 4205199 4207069 + 0 NA promoter-TSS (ENSMUSG00000011832.16) protein_coding-promoter-TSS (ENSMUSG00000011832.16) 748 ENSMUSG00000086805.9 ENSMUSG00000086805 ENSMUST00000148353 4932443L11Rik antisense Interval_99028 chr2 156738066 156738298 + 0 NA intron (ENSMUSG00000061689.15, intron 1 of 6) protein_coding-intron (ENSMUSG00000061689.15, intron 1 of 6) 17122 ENSMUSG00000061689.15 ENSMUSG00000061689 ENSMUST00000123730 Dlgap4 protein_coding Interval_5510 chr1 89454091 89455879 + 0 NA promoter-TSS (ENSMUSG00000055013.16) protein_coding-promoter-TSS (ENSMUSG00000055013.16) -28453 ENSMUSG00000104114.1 ENSMUSG00000104114 ENSMUST00000192974 Gm37297 TEC Interval_122631 chr5 24351269 24352762 + 0 NA promoter-TSS (ENSMUSG00000038319.14) protein_coding-promoter-TSS (ENSMUSG00000038319.14) -12795 ENSMUSG00000028978.12 ENSMUSG00000028978 ENSMUST00000030834 Nos3 protein_coding Interval_37080 chr12 57534677 57536086 + 0 NA Intergenic Intergenic 9655 ENSMUSG00000103704.1 ENSMUSG00000103704 ENSMUST00000195637 Gm37291 TEC Interval_58402 chr15 34176624 34177718 + 0 NA Intergenic Intergenic -37795 ENSMUSG00000089072.1 ENSMUSG00000089072 ENSMUST00000158447 Gm24500 snoRNA Interval_93496 chr2 73543947 73544252 + 0 NA Intergenic Intergenic 36239 ENSMUSG00000027107.3 ENSMUSG00000027107 ENSMUST00000028515 Chrna1 protein_coding Interval_46203 chr13 62460771 62461186 + 0 NA intron (ENSMUSG00000055228.8, intron 1 of 2) protein_coding-intron (ENSMUSG00000055228.8, intron 1 of 2) 5828 ENSMUSG00000113450.1 ENSMUSG00000113450 ENSMUST00000221951 Gm49359 protein_coding Interval_174201 chrX 139480361 139480670 + 0 NA exon (ENSMUSG00000042498.16, exon 1 of 14) protein_coding-exon (ENSMUSG00000042498.16, exon 1 of 14) 144 ENSMUSG00000042498.16 ENSMUSG00000042498 ENSMUST00000113030 Radx protein_coding Interval_131982 chr5 141810563 141810979 + 0 NA intron (ENSMUSG00000039683.16, intron 5 of 9) protein_coding-intron (ENSMUSG00000039683.16, intron 5 of 44) -194769 ENSMUSG00000085540.1 ENSMUSG00000085540 ENSMUST00000150385 Gm16036 antisense Interval_122924 chr5 27402029 27403148 + 0 NA intron (ENSMUSG00000061576.15, intron 3 of 3) protein_coding-intron (ENSMUSG00000061576.15, intron 3 of 25) 98774 ENSMUSG00000048703.9 ENSMUSG00000048703 ENSMUST00000124535 Speer4b protein_coding Interval_108149 chr3 121994498 121996041 + 0 NA intron (ENSMUSG00000039831.16, intron 1 of 11) protein_coding-intron (ENSMUSG00000039831.16, intron 12 of 22) -7720 ENSMUSG00000039831.16 ENSMUSG00000039831 ENSMUST00000199550 Arhgap29 protein_coding Interval_15528 chr10 50781108 50781496 + 0 NA intron (ENSMUSG00000038774.9, intron 3 of 5) protein_coding-intron (ENSMUSG00000038774.9, intron 36 of 41) 23118 ENSMUSG00000112918.1 ENSMUSG00000112918 ENSMUST00000220079 Gm18120 processed_pseudogene Interval_154823 chr8 23753591 23754675 + 0 NA intron (ENSMUSG00000037492.16, intron 2 of 7) protein_coding-intron (ENSMUSG00000037492.16, intron 2 of 6) -1368 ENSMUSG00000109158.1 ENSMUSG00000109158 ENSMUST00000209073 Gm45166 TEC Interval_11809 chr1 185589919 185590173 + 0 NA Intergenic Intergenic 102752 ENSMUSG00000102185.1 ENSMUSG00000102185 ENSMUST00000192616 5033404E19Rik transcribed_processed_pseudogene Interval_7342 chr1 129919517 129919801 + 0 NA intron (ENSMUSG00000042581.14, intron 1 of 9) protein_coding-intron (ENSMUSG00000042581.14, intron 13 of 15) -23503 ENSMUSG00000103281.1 ENSMUSG00000103281 ENSMUST00000191619 Gm37278 TEC Interval_123576 chr5 33587151 33587367 + 0 NA Intergenic Intergenic 41803 ENSMUSG00000037339.17 ENSMUSG00000037339 ENSMUST00000140043 Fam53a protein_coding Interval_87518 chr19 53199488 53199879 + 0 NA intron (ENSMUSG00000025026.15, intron 1 of 4) protein_coding-intron (ENSMUSG00000025026.15, intron 1 of 1) -39820 ENSMUSG00000088855.1 ENSMUSG00000088855 ENSMUST00000158230 Gm24724 snRNA Interval_14475 chr10 34173531 34173857 + 0 NA intron (ENSMUSG00000039497.8, intron 2 of 2) protein_coding-intron (ENSMUSG00000039497.8, intron 2 of 5) 2551 ENSMUSG00000039497.8 ENSMUSG00000039497 ENSMUST00000216194 Dse protein_coding Interval_32284 chr11 106683865 106684088 + 0 NA intron (ENSMUSG00000020717.19, intron 8 of 14) protein_coding-intron (ENSMUSG00000020717.19, intron 10 of 15) -20650 ENSMUSG00000020717.19 ENSMUSG00000020717 ENSMUST00000124958 Pecam1 protein_coding Interval_60387 chr15 73432612 73432892 + 0 NA Intergenic Intergenic -3842 ENSMUSG00000116174.1 ENSMUSG00000116174 ENSMUST00000229262 Gm10362 processed_pseudogene Interval_83810 chr19 4817122 4818016 + 0 NA Intergenic Intergenic -6057 ENSMUSG00000006456.10 ENSMUSG00000006456 ENSMUST00000180008 Rbm14 protein_coding Interval_45220 chr13 53260829 53261721 + 0 NA intron (ENSMUSG00000021464.14, intron 1 of 8) protein_coding-intron (ENSMUSG00000021464.14, intron 1 of 8) 14383 ENSMUSG00000021464.14 ENSMUSG00000021464 ENSMUST00000149299 Ror2 protein_coding Interval_3043 chr1 52568678 52569019 + 0 NA intron (ENSMUSG00000100120.1, intron 3 of 4) lincRNA-intron (ENSMUSG00000100120.1, intron 3 of 4) 11443 ENSMUSG00000099878.1 ENSMUSG00000099878 ENSMUST00000188544 Gm28178 lincRNA Interval_9102 chr1 153598502 153599570 + 0 NA Intergenic Intergenic 21637 ENSMUSG00000099858.1 ENSMUSG00000099858 ENSMUST00000186414 Gm6652 processed_pseudogene Interval_133686 chr6 8663273 8663747 + 0 NA intron (ENSMUSG00000062995.12, intron 3 of 4) protein_coding-intron (ENSMUSG00000062995.12, intron 8 of 13) -66521 ENSMUSG00000107724.1 ENSMUSG00000107724 ENSMUST00000204813 Gm16042 processed_pseudogene Interval_168273 chr9 78364166 78366491 + 0 NA Intergenic Intergenic 2849 ENSMUSG00000060461.5 ENSMUSG00000060461 ENSMUST00000071991 Dppa5a protein_coding Interval_165002 chr9 43801785 43802254 + 0 NA intron (ENSMUSG00000032012.9, intron 5 of 7) protein_coding-intron (ENSMUSG00000032012.9, intron 5 of 5) 57375 ENSMUSG00000032012.9 ENSMUSG00000032012 ENSMUST00000180221 Nectin1 protein_coding Interval_102254 chr3 20014466 20014704 + 0 NA promoter-TSS (ENSMUSG00000027615.14) protein_coding-promoter-TSS (ENSMUSG00000027615.14) 20709 ENSMUSG00000027615.14 ENSMUSG00000027615 ENSMUST00000133094 Hps3 protein_coding Interval_30370 chr11 93929294 93929672 + 0 NA intron (ENSMUSG00000059474.13, intron 10 of 11) protein_coding-intron (ENSMUSG00000059474.13, intron 11 of 11) 3943 ENSMUSG00000059474.13 ENSMUSG00000059474 ENSMUST00000155841 Mbtd1 protein_coding Interval_148266 chr7 80185734 80187328 + 0 NA promoter-TSS (ENSMUSG00000030539.13) protein_coding-promoter-TSS (ENSMUSG00000030539.13) -11910 ENSMUSG00000030539.13 ENSMUSG00000030539 ENSMUST00000123023 Sema4b protein_coding Interval_16307 chr10 62096362 62097146 + 0 NA Intergenic Intergenic 25631 ENSMUSG00000046687.6 ENSMUSG00000046687 ENSMUST00000053865 Gm5424 processed_pseudogene Interval_65377 chr16 22001309 22002263 + 0 NA Intergenic Intergenic -7775 ENSMUSG00000022855.9 ENSMUSG00000022855 ENSMUST00000232263 Senp2 protein_coding Interval_136917 chr6 64499809 64500015 + 0 NA intron (ENSMUSG00000071424.10, intron 13 of 15) protein_coding-intron (ENSMUSG00000071424.10, intron 13 of 15) 86264 ENSMUSG00000064775.1 ENSMUSG00000064775 ENSMUST00000082841 Gm25205 snRNA Interval_40786 chr12 108396032 108396561 + 0 NA intron (ENSMUSG00000058070.14, intron 1 of 6) protein_coding-intron (ENSMUSG00000058070.14, intron 1 of 6) 44974 ENSMUSG00000082203.1 ENSMUSG00000082203 ENSMUST00000119205 Gm15636 processed_pseudogene Interval_87978 chr19 57534414 57534922 + 0 NA Intergenic Intergenic -4771 ENSMUSG00000118248.1 ENSMUSG00000118248 ENSMUST00000235770 Gm50279 processed_pseudogene Interval_122687 chr5 24667025 24667955 + 0 NA Intergenic Intergenic -18497 ENSMUSG00000028954.11 ENSMUSG00000028954 ENSMUST00000200337 Nub1 protein_coding Interval_146837 chr7 52872808 52873072 + 0 NA Intergenic Intergenic -54130 ENSMUSG00000070203.1 ENSMUSG00000070203 ENSMUST00000093693 Gm22444 snRNA Interval_81224 chr18 56613998 56616163 + 0 NA Intergenic Intergenic 6017 ENSMUSG00000118153.1 ENSMUSG00000118153 ENSMUST00000236670 Gm50288 lincRNA Interval_134139 chr6 21756250 21756784 + 0 NA Intergenic Intergenic 75216 ENSMUSG00000106855.1 ENSMUSG00000106855 ENSMUST00000201318 5330437M03Rik TEC Interval_32220 chr11 106250440 106250692 + 0 NA TTS (ENSMUSG00000020706.13) protein_coding-TTS (ENSMUSG00000020706.13) 1988 ENSMUSG00000020706.13 ENSMUSG00000020706 ENSMUST00000143884 Ftsj3 protein_coding Interval_82612 chr18 75422878 75423942 + 0 NA Intergenic Intergenic 54420 ENSMUSG00000025880.11 ENSMUSG00000025880 ENSMUST00000172718 Smad7 protein_coding Interval_113541 chr4 56045952 56046561 + 0 NA Intergenic Intergenic -52517 ENSMUSG00000085643.1 ENSMUSG00000085643 ENSMUST00000134099 Gm12519 lincRNA Interval_117338 chr4 123082472 123083733 + 0 NA Intergenic Intergenic 10926 ENSMUSG00000086153.1 ENSMUSG00000086153 ENSMUST00000127060 Gm12923 antisense Interval_79554 chr18 33743256 33743487 + 0 NA Intergenic Intergenic -51568 ENSMUSG00000087590.2 ENSMUSG00000087590 ENSMUST00000179138 Epb41l4aos lincRNA Interval_99753 chr2 164705291 164705529 + 0 NA Intergenic Intergenic 6909 ENSMUSG00000017310.7 ENSMUSG00000017310 ENSMUST00000017454 Spint4 protein_coding Interval_73162 chr17 35188852 35190157 + 0 NA Intergenic Intergenic -1065 ENSMUSG00000073412.6 ENSMUSG00000073412 ENSMUST00000097336 Lst1 protein_coding Interval_146218 chr7 44769723 44770631 + 0 NA intron (ENSMUSG00000002205.16, intron 11 of 12) protein_coding-intron (ENSMUSG00000002205.16, intron 12 of 14) 13191 ENSMUSG00000002205.16 ENSMUSG00000002205 ENSMUST00000208083 Vrk3 protein_coding Interval_61735 chr15 83645446 83645646 + 0 NA intron (ENSMUSG00000016763.15, intron 4 of 19) protein_coding-intron (ENSMUSG00000016763.15, intron 7 of 22) -31807 ENSMUSG00000016763.15 ENSMUSG00000016763 ENSMUST00000229057 Scube1 protein_coding Interval_48008 chr13 95065887 95066079 + 0 NA intron (ENSMUSG00000021684.17, intron 7 of 18) protein_coding-intron (ENSMUSG00000021684.17, intron 9 of 20) 41682 ENSMUSG00000113070.1 ENSMUSG00000113070 ENSMUST00000220923 Gm48420 antisense Interval_132258 chr5 143683891 143684298 + 0 NA intron (ENSMUSG00000018001.18, intron 1 of 12) protein_coding-intron (ENSMUSG00000018001.18, intron 1 of 12) 43923 ENSMUSG00000051306.7 ENSMUSG00000051306 ENSMUST00000129606 Usp42 protein_coding Interval_68537 chr16 78489223 78491583 + 0 NA exon (ENSMUSG00000116959.1, exon 1 of 1) TEC-exon (ENSMUSG00000116959.1, exon 1 of 1) 723 ENSMUSG00000116959.1 ENSMUSG00000116959 ENSMUST00000232118 Gm49604 TEC Interval_64516 chr16 12986898 12987073 + 0 NA Intergenic Intergenic -35522 ENSMUSG00000116170.1 ENSMUSG00000116170 ENSMUST00000230534 Gm6332 processed_pseudogene Interval_49380 chr13 111573985 111574394 + 0 NA Intergenic Intergenic -5636 ENSMUSG00000086870.1 ENSMUSG00000086870 ENSMUST00000126640 Gm15288 antisense Interval_74896 chr17 57125470 57126442 + 0 NA Intergenic Intergenic 10838 ENSMUSG00000117064.1 ENSMUSG00000117064 ENSMUST00000233215 Gm49892 processed_pseudogene Interval_137521 chr6 72869368 72870528 + 0 NA intron (ENSMUSG00000055239.10, intron 1 of 3) protein_coding-intron (ENSMUSG00000055239.10, intron 1 of 6) 25971 ENSMUSG00000107610.1 ENSMUSG00000107610 ENSMUST00000205107 D530018E20Rik TEC Interval_17542 chr10 77616048 77616597 + 0 NA TTS (ENSMUSG00000020265.16) protein_coding-TTS (ENSMUSG00000020265.16) 1189 ENSMUSG00000020265.16 ENSMUSG00000020265 ENSMUST00000174295 Sumo3 protein_coding Interval_19927 chr10 111298146 111299119 + 0 NA promoter-TSS (ENSMUSG00000035759.4) protein_coding-promoter-TSS (ENSMUSG00000035759.4) -47 ENSMUSG00000035759.4 ENSMUSG00000035759 ENSMUST00000040454 Bbs10 protein_coding Interval_148762 chr7 86342738 86344063 + 0 NA Intergenic Intergenic -5814 ENSMUSG00000055610.5 ENSMUSG00000055610 ENSMUST00000069279 Olfr307 protein_coding Interval_109415 chr3 142042650 142042862 + 0 NA intron (ENSMUSG00000052430.15, intron 1 of 11) protein_coding-intron (ENSMUSG00000052430.15, intron 2 of 11) -111248 ENSMUSG00000052430.15 ENSMUSG00000052430 ENSMUST00000106230 Bmpr1b protein_coding Interval_50957 chr14 21088282 21089290 + 0 NA intron (ENSMUSG00000039197.10, intron 1 of 10) protein_coding-intron (ENSMUSG00000039197.10, intron 1 of 10) 36169 ENSMUSG00000039197.10 ENSMUSG00000039197 ENSMUST00000224974 Adk protein_coding Interval_132563 chr5 146343547 146345623 + 0 NA Intergenic Intergenic 58409 ENSMUSG00000029635.15 ENSMUSG00000029635 ENSMUST00000160924 Cdk8 protein_coding Interval_67719 chr16 56240831 56241045 + 0 NA intron (ENSMUSG00000035270.15, intron 9 of 18) protein_coding-intron (ENSMUSG00000035270.15, intron 9 of 19) 36625 ENSMUSG00000035270.15 ENSMUSG00000035270 ENSMUST00000159842 Impg2 protein_coding Interval_145512 chr7 35306871 35307404 + 0 NA exon (ENSMUSG00000063808.14, exon 5 of 5) protein_coding-exon (ENSMUSG00000063808.14, exon 5 of 5) -21818 ENSMUSG00000063808.14 ENSMUSG00000063808 ENSMUST00000153778 Gpatch1 protein_coding Interval_120436 chr4 148610085 148611824 + 0 NA TTS (ENSMUSG00000028979.17) protein_coding-TTS (ENSMUSG00000028979.17) 8386 ENSMUSG00000028979.17 ENSMUSG00000028979 ENSMUST00000136647 Masp2 protein_coding Interval_18805 chr10 91005492 91006171 + 0 NA promoter-TSS (ENSMUSG00000087966.1) snRNA-promoter-TSS (ENSMUSG00000087966.1) 90 ENSMUSG00000087966.1 ENSMUSG00000087966 ENSMUST00000157341 Gm25390 snRNA Interval_11214 chr1 180225715 180227242 + 0 NA TTS (ENSMUSG00000010609.15) protein_coding-TTS (ENSMUSG00000010609.15) 3090 ENSMUSG00000010609.15 ENSMUSG00000010609 ENSMUST00000133340 Psen2 protein_coding Interval_138522 chr6 88893160 88894053 + 0 NA promoter-TSS (ENSMUSG00000002870.8) protein_coding-promoter-TSS (ENSMUSG00000002870.8) -421 ENSMUSG00000002870.8 ENSMUSG00000002870 ENSMUST00000204217 Mcm2 protein_coding Interval_142958 chr6 147323777 147325076 + 0 NA Intergenic Intergenic 52589 ENSMUSG00000081023.1 ENSMUSG00000081023 ENSMUST00000118025 Gm15766 processed_pseudogene Interval_61514 chr15 82087403 82087864 + 0 NA intron (ENSMUSG00000068117.10, intron 11 of 30) protein_coding-intron (ENSMUSG00000068117.10, intron 11 of 30) 17637 ENSMUSG00000068117.10 ENSMUSG00000068117 ENSMUST00000186125 Mei1 protein_coding Interval_41603 chr12 116774818 116775148 + 0 NA intron (ENSMUSG00000056553.14, intron 3 of 4) protein_coding-intron (ENSMUSG00000056553.14, intron 3 of 22) 78119 ENSMUSG00000113795.1 ENSMUSG00000113795 ENSMUST00000220994 Gm48119 processed_pseudogene Interval_135527 chr6 40011381 40011794 + 0 NA intron (ENSMUSG00000057716.7, intron 2 of 3) protein_coding-intron (ENSMUSG00000057716.7, intron 2 of 3) -15307 ENSMUSG00000103331.1 ENSMUSG00000103331 ENSMUST00000194958 Gm37995 TEC Interval_174345 chrX 146011763 146012535 + 0 NA Intergenic Intergenic 17858 ENSMUSG00000083908.1 ENSMUSG00000083908 ENSMUST00000118905 Gm6447 processed_pseudogene Interval_5972 chr1 93634958 93636397 + 0 NA promoter-TSS (ENSMUSG00000026277.14) protein_coding-promoter-TSS (ENSMUSG00000026277.14) 484 ENSMUSG00000100927.1 ENSMUSG00000100927 ENSMUST00000190971 Gm28536 antisense Interval_116084 chr4 107515662 107515866 + 0 NA intron (ENSMUSG00000034762.9, intron 1 of 9) protein_coding-intron (ENSMUSG00000034762.9, intron 2 of 10) -65439 ENSMUSG00000034762.9 ENSMUSG00000034762 ENSMUST00000125573 Glis1 protein_coding Interval_59863 chr15 60090032 60090248 + 0 NA Intergenic Intergenic 5352 ENSMUSG00000077511.1 ENSMUSG00000077511 ENSMUST00000104323 Gm25875 snRNA Interval_56374 chr14 118207160 118207655 + 0 NA Intergenic Intergenic -4891 ENSMUSG00000115774.1 ENSMUSG00000115774 ENSMUST00000227956 4933431J24Rik lincRNA Interval_116430 chr4 111877689 111878638 + 0 NA intron (ENSMUSG00000028544.14, intron 1 of 1) protein_coding-intron (ENSMUSG00000028544.14, intron 14 of 14) 2464 ENSMUSG00000028544.14 ENSMUSG00000028544 ENSMUST00000131772 Slc5a9 protein_coding Interval_75149 chr17 64046763 64047478 + 0 NA intron (ENSMUSG00000000127.15, intron 14 of 17) protein_coding-intron (ENSMUSG00000000127.15, intron 14 of 17) -183329 ENSMUSG00000045506.3 ENSMUSG00000045506 ENSMUST00000050753 A930002H24Rik protein_coding Interval_40187 chr12 102404378 102404553 + 0 NA intron (ENSMUSG00000021190.14, intron 1 of 5) protein_coding-intron (ENSMUSG00000021190.14, intron 4 of 13) 1681 ENSMUSG00000021190.14 ENSMUSG00000021190 ENSMUST00000146499 Lgmn protein_coding Interval_36765 chr12 53292022 53292265 + 0 NA intron (ENSMUSG00000021010.9, intron 1 of 11) protein_coding-intron (ENSMUSG00000021010.9, intron 1 of 11) 17703 ENSMUSG00000113179.1 ENSMUSG00000113179 ENSMUST00000221214 1700030L22Rik antisense Interval_165428 chr9 47798471 47799488 + 0 NA intron (ENSMUSG00000032076.20, intron 4 of 8) protein_coding-intron (ENSMUSG00000032076.20, intron 4 of 8) -22242 ENSMUSG00000111155.1 ENSMUSG00000111155 ENSMUST00000216522 Gm47197 TEC Interval_99087 chr2 157094961 157095860 + 0 NA intron (ENSMUSG00000074628.9, intron 5 of 5) protein_coding-intron (ENSMUSG00000074628.9, intron 4 of 4) 8355 ENSMUSG00000074628.9 ENSMUSG00000074628 ENSMUST00000099140 Tldc2 protein_coding Interval_17346 chr10 76016023 76016267 + 0 NA Intergenic Intergenic 7219 ENSMUSG00000098817.1 ENSMUSG00000098817 ENSMUST00000184957 Mir6409 miRNA Interval_40655 chr12 106480604 106481298 + 0 NA Intergenic Intergenic 21801 ENSMUSG00000091762.1 ENSMUSG00000091762 ENSMUST00000167139 Gm3191 processed_pseudogene Interval_160873 chr8 114403775 114404000 + 0 NA Intergenic Intergenic -14199 ENSMUSG00000008874.3 ENSMUSG00000008874 ENSMUST00000009018 Clec3a protein_coding Interval_79086 chr18 24436253 24436892 + 0 NA Intergenic Intergenic -7402 ENSMUSG00000065532.1 ENSMUSG00000065532 ENSMUST00000083598 Mir187 miRNA Interval_167656 chr9 71616114 71616648 + 0 NA Intergenic Intergenic 14728 ENSMUSG00000032232.14 ENSMUSG00000032232 ENSMUST00000146567 Cgnl1 protein_coding Interval_168968 chr9 89831946 89832902 + 0 NA intron (ENSMUSG00000098627.7, intron 2 of 3) lincRNA-intron (ENSMUSG00000098627.7, intron 2 of 5) 5442 ENSMUSG00000098627.7 ENSMUSG00000098627 ENSMUST00000184759 4930524O08Rik lincRNA Interval_76643 chr17 83069604 83069933 + 0 NA exon (ENSMUSG00000100154.1, exon 2 of 2) lincRNA-exon (ENSMUSG00000100154.1, exon 2 of 2) 863 ENSMUSG00000100154.1 ENSMUSG00000100154 ENSMUST00000187700 Gm29052 lincRNA Interval_63656 chr15 102608494 102609194 + 0 NA intron (ENSMUSG00000099083.7, intron 1 of 4) protein_coding-intron (ENSMUSG00000099083.7, intron 1 of 10) 16223 ENSMUSG00000052414.9 ENSMUSG00000052414 ENSMUST00000184772 Gm28047 protein_coding Interval_61138 chr15 79464409 79465064 + 0 NA Intergenic Intergenic -7645 ENSMUSG00000106626.1 ENSMUSG00000106626 ENSMUST00000104762 Gm44302 miRNA Interval_53455 chr14 57625592 57626855 + 0 NA intron (ENSMUSG00000021952.16, intron 6 of 22) protein_coding-intron (ENSMUSG00000021952.16, intron 6 of 22) 39207 ENSMUSG00000021952.16 ENSMUSG00000021952 ENSMUST00000173638 Xpo4 protein_coding Interval_152613 chr7 135251584 135251782 + 0 NA Intergenic Intergenic -7020 ENSMUSG00000073804.5 ENSMUSG00000073804 ENSMUST00000097983 Nps protein_coding Interval_67848 chr16 57883486 57883718 + 0 NA TTS (ENSMUSG00000095926.1) snoRNA-TTS (ENSMUSG00000095926.1) 537 ENSMUSG00000095926.1 ENSMUSG00000095926 ENSMUST00000157878 Gm24039 snoRNA Interval_42314 chr13 12017800 12018528 + 0 NA intron (ENSMUSG00000021313.16, intron 1 of 2) protein_coding-intron (ENSMUSG00000021313.16, intron 1 of 104) 33891 ENSMUSG00000112947.1 ENSMUSG00000112947 ENSMUST00000220599 Gm47493 TEC Interval_10937 chr1 177280921 177281104 + 0 NA Intergenic Intergenic 11660 ENSMUSG00000103633.1 ENSMUSG00000103633 ENSMUST00000195582 Gm38328 processed_pseudogene Interval_94662 chr2 93129373 93129670 + 0 NA Intergenic Intergenic -31277 ENSMUSG00000087559.1 ENSMUSG00000087559 ENSMUST00000150159 Gm13802 lincRNA Interval_82804 chr18 77132857 77133175 + 0 NA intron (ENSMUSG00000025423.16, intron 9 of 14) protein_coding-intron (ENSMUSG00000025423.16, intron 8 of 12) 53347 ENSMUSG00000073532.3 ENSMUSG00000073532 ENSMUST00000097520 Gm7276 bidirectional_promoter_lncRNA Interval_48182 chr13 97047533 97048141 + 0 NA Intergenic Intergenic -13488 ENSMUSG00000052075.7 ENSMUSG00000052075 ENSMUST00000221277 1700029F12Rik protein_coding Interval_164081 chr9 31348748 31349386 + 0 NA intron (ENSMUSG00000042496.18, intron 11 of 20) protein_coding-intron (ENSMUSG00000042496.18, intron 10 of 20) 35514 ENSMUSG00000042496.18 ENSMUSG00000042496 ENSMUST00000074510 Prdm10 protein_coding Interval_123846 chr5 35918215 35918539 + 0 NA TTS (ENSMUSG00000082692.2) processed_pseudogene-TTS (ENSMUSG00000082692.2) 480 ENSMUSG00000082692.2 ENSMUSG00000082692 ENSMUST00000119066 H2af-ps processed_pseudogene Interval_114703 chr4 84027108 84028677 + 0 NA Intergenic Intergenic 16987 ENSMUSG00000085217.1 ENSMUSG00000085217 ENSMUST00000125884 6030471H07Rik lincRNA Interval_15189 chr10 43255319 43257503 + 0 NA intron (ENSMUSG00000038240.13, intron 1 of 7) protein_coding-intron (ENSMUSG00000038240.13, intron 1 of 7) 34675 ENSMUSG00000038240.13 ENSMUSG00000038240 ENSMUST00000162008 Pdss2 protein_coding Interval_44841 chr13 49020293 49020503 + 0 NA Intergenic Intergenic -52381 ENSMUSG00000038014.7 ENSMUSG00000038014 ENSMUST00000060805 Fam120a protein_coding Interval_118927 chr4 134496627 134497361 + 0 NA promoter-TSS (ENSMUSG00000037348.15) protein_coding-promoter-TSS (ENSMUSG00000037348.15) -47 ENSMUSG00000037348.15 ENSMUSG00000037348 ENSMUST00000155449 Paqr7 protein_coding Interval_163832 chr9 27006718 27007451 + 0 NA TTS (ENSMUSG00000031988.10) protein_coding-TTS (ENSMUSG00000031988.10) 4024 ENSMUSG00000035443.10 ENSMUSG00000035443 ENSMUST00000216361 Thyn1 protein_coding Interval_133226 chr5 150682877 150683433 + 0 NA intron (ENSMUSG00000034021.15, intron 1 of 34) protein_coding-intron (ENSMUSG00000034021.15, intron 1 of 34) 9416 ENSMUSG00000034021.15 ENSMUSG00000034021 ENSMUST00000132947 Pds5b protein_coding Interval_55118 chr14 78273227 78274247 + 0 NA Intergenic Intergenic -27426 ENSMUSG00000080402.1 ENSMUSG00000080402 ENSMUST00000116752 Gm23652 miRNA Interval_38963 chr12 84152175 84153066 + 0 NA TTS (ENSMUSG00000042507.15) protein_coding-TTS (ENSMUSG00000042507.15) -4131 ENSMUSG00000054383.2 ENSMUSG00000054383 ENSMUST00000061425 Pnma1 protein_coding Interval_117949 chr4 127262842 127263763 + 0 NA Intergenic Intergenic 19518 ENSMUSG00000042380.8 ENSMUSG00000042380 ENSMUST00000142029 Smim12 protein_coding Interval_50656 chr14 17645380 17645751 + 0 NA Intergenic Intergenic 125557 ENSMUSG00000114281.1 ENSMUSG00000114281 ENSMUST00000225878 Gm48320 processed_pseudogene Interval_96695 chr2 127224341 127225892 + 0 NA TTS (ENSMUSG00000003660.10) protein_coding-TTS (ENSMUSG00000003660.10) -11693 ENSMUSG00000003660.10 ENSMUSG00000003660 ENSMUST00000131435 Snrnp200 protein_coding Interval_38433 chr12 79012751 79013778 + 0 NA Intergenic Intergenic -5924 ENSMUSG00000046157.13 ENSMUSG00000046157 ENSMUST00000173095 Tmem229b protein_coding Interval_13267 chr10 13805675 13806581 + 0 NA intron (ENSMUSG00000019806.13, intron 3 of 3) protein_coding-intron (ENSMUSG00000019806.13, intron 2 of 5) 62701 ENSMUSG00000019806.13 ENSMUSG00000019806 ENSMUST00000162869 Aig1 protein_coding Interval_110500 chr3 159846757 159848396 + 0 NA promoter-TSS (ENSMUSG00000028173.10) protein_coding-promoter-TSS (ENSMUSG00000028173.10) 7837 ENSMUSG00000028173.10 ENSMUSG00000028173 ENSMUST00000196782 Wls protein_coding Interval_130983 chr5 134394636 134395877 + 0 NA intron (ENSMUSG00000023079.14, intron 9 of 27) protein_coding-intron (ENSMUSG00000023079.14, intron 9 of 30) -18232 ENSMUSG00000023079.14 ENSMUSG00000023079 ENSMUST00000201647 Gtf2ird1 protein_coding Interval_147144 chr7 63836168 63837010 + 0 NA Intergenic Intergenic 9611 ENSMUSG00000108629.1 ENSMUSG00000108629 ENSMUST00000206076 Gm44720 processed_pseudogene Interval_169341 chr9 96520728 96521819 + 0 NA exon (ENSMUSG00000099564.2, exon 2 of 11) protein_coding-exon (ENSMUSG00000099564.2, exon 2 of 11) 3991 ENSMUSG00000099564.2 ENSMUSG00000099564 ENSMUST00000190704 Gm28729 protein_coding Interval_172485 chrX 21088694 21090009 + 0 NA promoter-TSS (ENSMUSG00000031079.12) protein_coding-promoter-TSS (ENSMUSG00000031079.12) -365 ENSMUSG00000031079.12 ENSMUSG00000031079 ENSMUST00000139060 Zfp300 protein_coding Interval_113641 chr4 57216060 57217007 + 0 NA intron (ENSMUSG00000038764.14, intron 19 of 25) protein_coding-intron (ENSMUSG00000038764.14, intron 19 of 25) 44462 ENSMUSG00000085967.1 ENSMUSG00000085967 ENSMUST00000152074 Gm12530 antisense Interval_95814 chr2 116859865 116860124 + 0 NA intron (ENSMUSG00000086462.1, intron 2 of 3) antisense-intron (ENSMUSG00000086462.1, intron 2 of 3) 17174 ENSMUSG00000086462.1 ENSMUSG00000086462 ENSMUST00000151391 Gm13990 antisense Interval_123470 chr5 32736629 32737152 + 0 NA TTS (ENSMUSG00000082305.4) transcribed_unprocessed_pseudogene-TTS (ENSMUSG00000082305.4) 2444 ENSMUSG00000105647.1 ENSMUSG00000105647 ENSMUST00000196545 Gm43695 processed_transcript Interval_81506 chr18 61245745 61246814 + 0 NA intron (ENSMUSG00000024575.16, intron 6 of 21) protein_coding-intron (ENSMUSG00000024575.16, intron 6 of 21) 13693 ENSMUSG00000091957.3 ENSMUSG00000091957 ENSMUST00000076842 Rps2-ps10 transcribed_processed_pseudogene Interval_136818 chr6 60935084 60935444 + 0 NA intron (ENSMUSG00000054641.10, intron 3 of 3) protein_coding-intron (ENSMUSG00000054641.10, intron 3 of 3) -9214 ENSMUSG00000054641.10 ENSMUSG00000054641 ENSMUST00000204333 Mmrn1 protein_coding Interval_77956 chr18 6109686 6110245 + 0 NA intron (ENSMUSG00000041225.16, intron 1 of 4) protein_coding-intron (ENSMUSG00000041225.16, intron 3 of 18) 2015 ENSMUSG00000041225.16 ENSMUSG00000041225 ENSMUST00000182572 Arhgap12 protein_coding Interval_59890 chr15 60896985 60897953 + 0 NA intron (ENSMUSG00000022347.8, intron 1 of 1) protein_coding-intron (ENSMUSG00000022347.8, intron 1 of 1) -15505 ENSMUSG00000115231.1 ENSMUSG00000115231 ENSMUST00000228929 4930402D18Rik antisense Interval_169378 chr9 96795387 96795903 + 0 NA Intergenic Intergenic -14111 ENSMUSG00000100383.1 ENSMUSG00000100383 ENSMUST00000187301 Gm28688 processed_pseudogene Interval_52253 chr14 41040753 41040993 + 0 NA Intergenic Intergenic -12780 ENSMUSG00000114196.1 ENSMUSG00000114196 ENSMUST00000224095 Gm47547 antisense Interval_140620 chr6 120149572 120149839 + 0 NA intron (ENSMUSG00000041377.12, intron 1 of 3) protein_coding-intron (ENSMUSG00000041377.12, intron 1 of 3) -5955 ENSMUSG00000095086.1 ENSMUSG00000095086 ENSMUST00000180263 Gm25327 snRNA Interval_69461 chr16 93676333 93676776 + 0 NA Intergenic Intergenic -6705 ENSMUSG00000022947.8 ENSMUSG00000022947 ENSMUST00000231302 Cbr3 protein_coding Interval_158539 chr8 84339081 84339592 + 0 NA intron (ENSMUSG00000034656.18, intron 1 of 48) protein_coding-intron (ENSMUSG00000034656.18, intron 1 of 48) 697 ENSMUSG00000034656.18 ENSMUSG00000034656 ENSMUST00000130507 Cacna1a protein_coding Interval_55092 chr14 77936470 77936668 + 0 NA intron (ENSMUSG00000022014.15, intron 5 of 6) protein_coding-intron (ENSMUSG00000022014.15, intron 5 of 11) 32162 ENSMUSG00000022014.15 ENSMUSG00000022014 ENSMUST00000227903 Epsti1 protein_coding Interval_15560 chr10 51463396 51464889 + 0 NA Intergenic Intergenic 8162 ENSMUSG00000112212.1 ENSMUSG00000112212 ENSMUST00000219395 Gm46189 lincRNA Interval_99917 chr2 165799444 165801424 + 0 NA intron (ENSMUSG00000039671.18, intron 16 of 22) protein_coding-intron (ENSMUSG00000039671.18, intron 17 of 23) -57250 ENSMUSG00000085274.1 ENSMUSG00000085274 ENSMUST00000155786 BC046401 processed_transcript Interval_79305 chr18 30311466 30312750 + 0 NA intron (ENSMUSG00000033628.15, intron 14 of 24) protein_coding-intron (ENSMUSG00000033628.15, intron 14 of 23) 39181 ENSMUSG00000033628.15 ENSMUSG00000033628 ENSMUST00000131405 Pik3c3 protein_coding Interval_127441 chr5 103950535 103951013 + 0 NA Intergenic Intergenic 26552 ENSMUSG00000034528.15 ENSMUSG00000034528 ENSMUST00000112803 Hsd17b13 protein_coding Interval_126654 chr5 91767290 91767634 + 0 NA promoter-TSS (ENSMUSG00000101978.1) lincRNA-promoter-TSS (ENSMUSG00000101978.1) -162 ENSMUSG00000101978.1 ENSMUSG00000101978 ENSMUST00000187067 1700063O14Rik lincRNA Interval_62181 chr15 88634757 88635524 + 0 NA Intergenic Intergenic 34838 ENSMUSG00000054117.8 ENSMUSG00000054117 ENSMUST00000066949 Zdhhc25 protein_coding Interval_88869 chr2 11876173 11876407 + 0 NA Intergenic Intergenic -23792 ENSMUSG00000103542.1 ENSMUSG00000103542 ENSMUST00000193884 Gm34768 unprocessed_pseudogene Interval_71345 chr17 22431903 22432665 + 0 NA intron (ENSMUSG00000071266.13, intron 2 of 2) protein_coding-intron (ENSMUSG00000071266.13, intron 2 of 6) -18839 ENSMUSG00000071266.13 ENSMUSG00000071266 ENSMUST00000167740 Zfp946 protein_coding Interval_83138 chr18 81980904 81982228 + 0 NA TTS (ENSMUSG00000077599.1) snoRNA-TTS (ENSMUSG00000077599.1) 497 ENSMUSG00000077599.1 ENSMUSG00000077599 ENSMUST00000104411 Gm26012 snoRNA Interval_11543 chr1 182574081 182575011 + 0 NA intron (ENSMUSG00000038599.14, intron 2 of 9) protein_coding-intron (ENSMUSG00000038599.14, intron 2 of 20) 9539 ENSMUSG00000038599.14 ENSMUSG00000038599 ENSMUST00000192671 Capn8 protein_coding Interval_107055 chr3 103193230 103193765 + 0 NA Intergenic Intergenic 5478 ENSMUSG00000054379.7 ENSMUSG00000054379 ENSMUST00000090704 2410024N13Rik pseudogene Interval_125101 chr5 64487715 64489001 + 0 NA Intergenic Intergenic 11350 ENSMUSG00000105352.4 ENSMUSG00000105352 ENSMUST00000196829 C030018K13Rik lincRNA Interval_29704 chr11 86220357 86221502 + 0 NA intron (ENSMUSG00000018068.13, intron 5 of 5) protein_coding-intron (ENSMUSG00000018068.13, intron 19 of 24) 11247 ENSMUSG00000018068.13 ENSMUSG00000018068 ENSMUST00000141756 Ints2 protein_coding Interval_70393 chr17 9722405 9723533 + 0 NA intron (ENSMUSG00000117341.1, intron 1 of 3) lincRNA-intron (ENSMUSG00000117341.1, intron 1 of 2) 3384 ENSMUSG00000117341.1 ENSMUSG00000117341 ENSMUST00000233960 Gm34684 lincRNA Interval_84539 chr19 12495110 12495514 + 0 NA intron (ENSMUSG00000039982.8, intron 1 of 8) protein_coding-intron (ENSMUSG00000039982.8, intron 1 of 8) 6142 ENSMUSG00000039982.8 ENSMUSG00000039982 ENSMUST00000045521 Dtx4 protein_coding Interval_23386 chr11 22086553 22086860 + 0 NA intron (ENSMUSG00000042302.14, intron 15 of 24) protein_coding-intron (ENSMUSG00000042302.14, intron 14 of 23) -84996 ENSMUSG00000005917.15 ENSMUSG00000005917 ENSMUST00000147486 Otx1 protein_coding Interval_58287 chr15 31663814 31664098 + 0 NA Intergenic Intergenic -8390 ENSMUSG00000115188.1 ENSMUSG00000115188 ENSMUST00000227734 Gm46522 processed_pseudogene Interval_90307 chr2 29691161 29692240 + 0 NA intron (ENSMUSG00000039844.20, intron 5 of 23) protein_coding-intron (ENSMUSG00000039844.20, intron 4 of 25) 46965 ENSMUSG00000048316.3 ENSMUSG00000048316 ENSMUST00000051212 Gm9823 pseudogene Interval_125455 chr5 67279493 67279887 + 0 NA intron (ENSMUSG00000037720.16, intron 4 of 5) protein_coding-intron (ENSMUSG00000037720.16, intron 6 of 7) -18428 ENSMUSG00000107319.1 ENSMUSG00000107319 ENSMUST00000201816 Gm42670 antisense Interval_104932 chr3 79119752 79121536 + 0 NA intron (ENSMUSG00000062232.14, intron 7 of 29) protein_coding-intron (ENSMUSG00000062232.14, intron 1 of 23) -75730 ENSMUSG00000064693.1 ENSMUSG00000064693 ENSMUST00000082759 Gm24150 snRNA Interval_48459 chr13 99175261 99175910 + 0 NA Intergenic Intergenic -9238 ENSMUSG00000050919.9 ENSMUSG00000050919 ENSMUST00000056558 Zfp366 protein_coding Interval_20866 chr10 121606639 121606828 + 0 NA TTS (ENSMUSG00000034667.8) protein_coding-TTS (ENSMUSG00000034667.8) -5920 ENSMUSG00000034667.8 ENSMUSG00000034667 ENSMUST00000217865 Xpot protein_coding Interval_57070 chr15 5512885 5513551 + 0 NA intron (ENSMUSG00000110018.2, intron 2 of 8) transcribed_processed_pseudogene-intron (ENSMUSG00000110018.2, intron 2 of 8) 16900 ENSMUSG00000110018.2 ENSMUSG00000110018 ENSMUST00000227355 5430437J10Rik transcribed_processed_pseudogene Interval_68255 chr16 71305178 71305399 + 0 NA Intergenic Intergenic 55404 ENSMUSG00000116982.1 ENSMUSG00000116982 ENSMUST00000231541 4930567J20Rik lincRNA Interval_39135 chr12 85364103 85364321 + 0 NA promoter-TSS (ENSMUSG00000113752.1) TEC-promoter-TSS (ENSMUSG00000113752.1) -567 ENSMUSG00000113752.1 ENSMUSG00000113752 ENSMUST00000222887 Gm47817 TEC Interval_34890 chr12 13009378 13009708 + 0 NA Intergenic Intergenic 22226 ENSMUSG00000113220.1 ENSMUSG00000113220 ENSMUST00000221590 Gm35208 lincRNA Interval_145858 chr7 40738879 40739313 + 0 NA Intergenic Intergenic 64359 ENSMUSG00000102004.3 ENSMUSG00000102004 ENSMUST00000207559 4933402C06Rik lincRNA Interval_138624 chr6 90522347 90522586 + 0 NA intron (ENSMUSG00000030088.15, intron 1 of 2) protein_coding-intron (ENSMUSG00000030088.15, intron 1 of 2) 9164 ENSMUSG00000108271.1 ENSMUSG00000108271 ENSMUST00000204492 Gm44236 TEC Interval_77615 chr17 93140151 93141360 + 0 NA Intergenic Intergenic -27757 ENSMUSG00000117591.1 ENSMUSG00000117591 ENSMUST00000234088 Gm49997 processed_pseudogene Interval_160897 chr8 114771243 114771613 + 0 NA intron (ENSMUSG00000004637.15, intron 8 of 8) protein_coding-intron (ENSMUSG00000004637.15, intron 8 of 8) 59261 ENSMUSG00000004637.15 ENSMUSG00000004637 ENSMUST00000162052 Wwox protein_coding Interval_64854 chr16 16566664 16567425 + 0 NA intron (ENSMUSG00000022788.16, intron 1 of 8) protein_coding-intron (ENSMUSG00000022788.16, intron 1 of 8) -6998 ENSMUSG00000022788.16 ENSMUSG00000022788 ENSMUST00000161624 Fgd4 protein_coding Interval_14498 chr10 34362859 34363376 + 0 NA intron (ENSMUSG00000039480.14, intron 5 of 10) protein_coding-intron (ENSMUSG00000039480.14, intron 6 of 11) -26864 ENSMUSG00000039462.4 ENSMUSG00000039462 ENSMUST00000105511 Col10a1 protein_coding Interval_113050 chr4 47234679 47235825 + 0 NA intron (ENSMUSG00000028339.17, intron 1 of 2) protein_coding-intron (ENSMUSG00000028339.17, intron 2 of 38) -23283 ENSMUSG00000028339.17 ENSMUSG00000028339 ENSMUST00000107730 Col15a1 protein_coding Interval_142183 chr6 137947908 137948176 + 0 NA Intergenic Intergenic -28071 ENSMUSG00000094466.1 ENSMUSG00000094466 ENSMUST00000177773 Gm24308 miRNA Interval_173837 chrX 105895855 105896095 + 0 NA intron (ENSMUSG00000031229.16, intron 1 of 6) protein_coding-intron (ENSMUSG00000031229.16, intron 2 of 5) -20670 ENSMUSG00000031229.16 ENSMUSG00000031229 ENSMUST00000126345 Atrx protein_coding Interval_168650 chr9 85406961 85407248 + 0 NA Intergenic Intergenic 12054 ENSMUSG00000111663.1 ENSMUSG00000111663 ENSMUST00000216235 Gm48833 lincRNA Interval_94246 chr2 86352202 86352811 + 0 NA Intergenic Intergenic -2222 ENSMUSG00000075189.5 ENSMUSG00000075189 ENSMUST00000188023 Olfr1055 protein_coding Interval_87093 chr19 46067867 46068636 + 0 NA intron (ENSMUSG00000055491.14, intron 1 of 1) protein_coding-intron (ENSMUSG00000055491.14, intron 8 of 13) -7738 ENSMUSG00000015176.11 ENSMUSG00000015176 ENSMUST00000224490 Nolc1 protein_coding Interval_106454 chr3 96440711 96441367 + 0 NA intron (ENSMUSG00000046317.14, intron 2 of 3) protein_coding-intron (ENSMUSG00000046317.14, intron 2 of 4) -9407 ENSMUSG00000096838.1 ENSMUSG00000096838 ENSMUST00000083360 Gm26232 snRNA Interval_56588 chr14 120572511 120572712 + 0 NA Intergenic Intergenic -60351 ENSMUSG00000115648.1 ENSMUSG00000115648 ENSMUST00000226920 Gm49008 lincRNA Interval_135856 chr6 47952831 47953965 + 0 NA promoter-TSS (ENSMUSG00000045466.18) protein_coding-promoter-TSS (ENSMUSG00000045466.18) -47 ENSMUSG00000045466.18 ENSMUSG00000045466 ENSMUST00000140719 Zfp956 protein_coding Interval_98318 chr2 150980068 150980263 + 0 NA exon (ENSMUSG00000068115.13, exon 2 of 24) protein_coding-exon (ENSMUSG00000068115.13, exon 2 of 24) -9085 ENSMUSG00000068115.13 ENSMUSG00000068115 ENSMUST00000128627 Ninl protein_coding Interval_152117 chr7 129575135 129575723 + 0 NA Intergenic Intergenic -32378 ENSMUSG00000042055.13 ENSMUSG00000042055 ENSMUST00000136560 Wdr11 protein_coding Interval_19313 chr10 96609092 96610146 + 0 NA Intergenic Intergenic -7935 ENSMUSG00000036478.8 ENSMUSG00000036478 ENSMUST00000218953 Btg1 protein_coding Interval_1411 chr1 21460946 21461535 + 0 NA intron (ENSMUSG00000028033.16, intron 7 of 11) protein_coding-intron (ENSMUSG00000028033.16, intron 9 of 13) -4223 ENSMUSG00000104138.1 ENSMUSG00000104138 ENSMUST00000192487 Gm36949 TEC Interval_65495 chr16 22791344 22791613 + 0 NA Intergenic Intergenic 20099 ENSMUSG00000033501.5 ENSMUSG00000033501 ENSMUST00000040592 Crygs protein_coding Interval_88045 chr19 58358218 58358665 + 0 NA intron (ENSMUSG00000025089.15, intron 3 of 8) protein_coding-intron (ENSMUSG00000025089.15, intron 5 of 10) 96025 ENSMUSG00000025089.15 ENSMUSG00000025089 ENSMUST00000135730 Gfra1 protein_coding Interval_13989 chr10 25304547 25304789 + 0 NA exon (ENSMUSG00000112352.1, exon 6 of 6) antisense-exon (ENSMUSG00000112352.1, exon 6 of 6) 6059 ENSMUSG00000112352.1 ENSMUSG00000112352 ENSMUST00000218840 Gm40617 antisense Interval_91921 chr2 51483002 51484229 + 0 NA Intergenic Intergenic 10167 ENSMUSG00000089614.1 ENSMUSG00000089614 ENSMUST00000158989 Gm23505 scaRNA Interval_55456 chr14 87475826 87476063 + 0 NA intron (ENSMUSG00000022019.16, intron 5 of 13) protein_coding-intron (ENSMUSG00000022019.16, intron 3 of 6) -17009 ENSMUSG00000115184.1 ENSMUSG00000115184 ENSMUST00000226795 Gm49197 TEC Interval_47074 chr13 75360996 75361653 + 0 NA Intergenic Intergenic 118063 ENSMUSG00000113821.1 ENSMUSG00000113821 ENSMUST00000221326 Gm48234 processed_pseudogene Interval_156105 chr8 44734653 44735214 + 0 NA Intergenic Intergenic 133100 ENSMUSG00000088523.1 ENSMUSG00000088523 ENSMUST00000157898 Gm26089 rRNA Interval_110904 chr4 9846759 9847579 + 0 NA intron (ENSMUSG00000051279.2, intron 1 of 1) protein_coding-intron (ENSMUSG00000051279.2, intron 1 of 1) 2797 ENSMUSG00000051279.2 ENSMUSG00000051279 ENSMUST00000057613 Gdf6 protein_coding Interval_88845 chr2 11602490 11603645 + 0 NA intron (ENSMUSG00000037197.11, intron 1 of 3) protein_coding-intron (ENSMUSG00000037197.11, intron 1 of 11) 5629 ENSMUSG00000082727.2 ENSMUSG00000082727 ENSMUST00000117797 Gm13260 processed_pseudogene Interval_70068 chr17 5117272 5118565 + 0 NA intron (ENSMUSG00000069729.14, intron 3 of 19) protein_coding-intron (ENSMUSG00000069729.14, intron 3 of 18) -5808 ENSMUSG00000081783.2 ENSMUSG00000081783 ENSMUST00000122283 Gm15599 processed_pseudogene Interval_52545 chr14 47399125 47399395 + 0 NA intron (ENSMUSG00000037544.14, intron 12 of 16) protein_coding-intron (ENSMUSG00000037544.14, intron 12 of 18) 7123 ENSMUSG00000037544.14 ENSMUSG00000037544 ENSMUST00000179392 Dlgap5 protein_coding Interval_131845 chr5 140340793 140341072 + 0 NA TTS (ENSMUSG00000029560.12) protein_coding-TTS (ENSMUSG00000029560.12) -9034 ENSMUSG00000029557.7 ENSMUSG00000029557 ENSMUST00000031536 Mrm2 protein_coding Interval_37868 chr12 72696133 72696414 + 0 NA Intergenic Intergenic -31519 ENSMUSG00000021094.10 ENSMUSG00000021094 ENSMUST00000221674 Dhrs7 protein_coding Interval_26998 chr11 62298367 62300123 + 0 NA intron (ENSMUSG00000042298.18, intron 5 of 7) protein_coding-intron (ENSMUSG00000042298.18, intron 7 of 9) 5925 ENSMUSG00000081340.1 ENSMUSG00000081340 ENSMUST00000119805 Gm12275 processed_pseudogene Interval_108023 chr3 120082838 120083023 + 0 NA Intergenic Intergenic 114199 ENSMUSG00000104726.1 ENSMUSG00000104726 ENSMUST00000195974 Gm18384 processed_pseudogene Interval_55387 chr14 86395435 86397374 + 0 NA TTS (ENSMUSG00000115664.1) lincRNA-TTS (ENSMUSG00000115664.1) -12118 ENSMUSG00000087812.1 ENSMUSG00000087812 ENSMUST00000157187 Gm25115 snRNA Interval_23193 chr11 20458864 20459595 + 0 NA Intergenic Intergenic 12817 ENSMUSG00000083878.3 ENSMUSG00000083878 ENSMUST00000119032 Gm12034 processed_pseudogene Interval_165866 chr9 53949123 53949941 + 0 NA intron (ENSMUSG00000041986.16, intron 1 of 8) protein_coding-intron (ENSMUSG00000041986.16, intron 1 of 10) -22506 ENSMUSG00000041986.16 ENSMUSG00000041986 ENSMUST00000213111 Elmod1 protein_coding Interval_23428 chr11 22584672 22585496 + 0 NA Intergenic Intergenic -32324 ENSMUSG00000086256.1 ENSMUSG00000086256 ENSMUST00000142151 Gm12052 lincRNA Interval_125014 chr5 63871949 63872474 + 0 NA intron (ENSMUSG00000060512.7, intron 1 of 4) protein_coding-intron (ENSMUSG00000060512.7, intron 1 of 3) -5265 ENSMUSG00000060512.7 ENSMUSG00000060512 ENSMUST00000199667 0610040J01Rik protein_coding Interval_106362 chr3 95644982 95646162 + 0 NA Intergenic Intergenic 6268 ENSMUSG00000106383.1 ENSMUSG00000106383 ENSMUST00000200640 E330034L11Rik TEC Interval_77808 chr18 3857334 3857601 + 0 NA TTS (ENSMUSG00000117463.1) processed_pseudogene-TTS (ENSMUSG00000117463.1) 1113 ENSMUSG00000117463.1 ENSMUSG00000117463 ENSMUST00000234895 Rpl7a-ps6 processed_pseudogene Interval_28695 chr11 77792871 77793764 + 0 NA intron (ENSMUSG00000000631.20, intron 2 of 39) protein_coding-intron (ENSMUSG00000000631.20, intron 1 of 39) -5570 ENSMUSG00000069804.2 ENSMUSG00000069804 ENSMUST00000092883 Gm10277 protein_coding Interval_16502 chr10 63220213 63220724 + 0 NA Intergenic Intergenic 23685 ENSMUSG00000045391.4 ENSMUSG00000045391 ENSMUST00000054837 1700120B22Rik bidirectional_promoter_lncRNA Interval_60300 chr15 72637527 72637917 + 0 NA intron (ENSMUSG00000047921.17, intron 20 of 21) protein_coding-intron (ENSMUSG00000047921.17, intron 20 of 21) 49439 ENSMUSG00000116088.1 ENSMUSG00000116088 ENSMUST00000230426 Gm49460 antisense Interval_138669 chr6 91003593 91004058 + 0 NA Intergenic Intergenic 94797 ENSMUSG00000030091.17 ENSMUSG00000030091 ENSMUST00000203434 Nup210 protein_coding Interval_154455 chr8 18033781 18034908 + 0 NA Intergenic Intergenic 240477 ENSMUSG00000088320.1 ENSMUSG00000088320 ENSMUST00000157695 Gm25665 snoRNA Interval_173994 chrX 127130683 127131116 + 0 NA Intergenic Intergenic 90927 ENSMUSG00000062791.4 ENSMUSG00000062791 ENSMUST00000096332 Gm382 protein_coding Interval_114182 chr4 66192523 66192854 + 0 NA intron (ENSMUSG00000028373.16, intron 2 of 21) protein_coding-intron (ENSMUSG00000028373.16, intron 2 of 22) -161161 ENSMUSG00000083080.1 ENSMUSG00000083080 ENSMUST00000119808 Gm11484 processed_pseudogene Interval_104524 chr3 67437850 67438052 + 0 NA intron (ENSMUSG00000027774.16, intron 4 of 13) protein_coding-intron (ENSMUSG00000027774.16, intron 4 of 17) 7835 ENSMUSG00000027774.16 ENSMUSG00000027774 ENSMUST00000160529 Gfm1 protein_coding Interval_138796 chr6 91946021 91946401 + 0 NA intron (ENSMUSG00000034063.8, intron 2 of 2) protein_coding-intron (ENSMUSG00000034063.8, intron 14 of 16) -6698 ENSMUSG00000108625.1 ENSMUSG00000108625 ENSMUST00000205414 Gm44711 TEC Interval_35120 chr12 17428845 17429201 + 0 NA intron (ENSMUSG00000061458.9, intron 20 of 20) protein_coding-intron (ENSMUSG00000061458.9, intron 20 of 20) -7595 ENSMUSG00000113246.1 ENSMUSG00000113246 ENSMUST00000220527 Gm36752 lincRNA Interval_39209 chr12 85855708 85856791 + 0 NA intron (ENSMUSG00000012609.19, intron 6 of 6) protein_coding-intron (ENSMUSG00000012609.19, intron 6 of 33) -33999 ENSMUSG00000021252.11 ENSMUSG00000021252 ENSMUST00000142331 Erg28 protein_coding Interval_110687 chr4 6440920 6441137 + 0 NA intron (ENSMUSG00000028245.15, intron 1 of 29) protein_coding-intron (ENSMUSG00000028245.15, intron 1 of 30) 13068 ENSMUSG00000028245.15 ENSMUSG00000028245 ENSMUST00000124656 Nsmaf protein_coding Interval_79912 chr18 35861998 35863391 + 0 NA intron (ENSMUSG00000117840.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000117840.1, intron 1 of 1) 443 ENSMUSG00000117840.1 ENSMUSG00000117840 ENSMUST00000236587 Gm50399 lincRNA Interval_131569 chr5 138180612 138181439 + 0 NA TTS (ENSMUSG00000019518.11) protein_coding-TTS (ENSMUSG00000019518.11) 6191 ENSMUSG00000036980.13 ENSMUSG00000036980 ENSMUST00000200483 Taf6 protein_coding Interval_79382 chr18 31476093 31476956 + 0 NA Intergenic Intergenic -10157 ENSMUSG00000077169.1 ENSMUSG00000077169 ENSMUST00000103981 Gm25396 snoRNA Interval_173941 chrX 114336128 114336940 + 0 NA Intergenic Intergenic -138070 ENSMUSG00000025597.13 ENSMUSG00000025597 ENSMUST00000133447 Klhl4 protein_coding Interval_117798 chr4 126281610 126282000 + 0 NA Intergenic Intergenic -18725 ENSMUSG00000056174.8 ENSMUSG00000056174 ENSMUST00000128435 Col8a2 protein_coding Interval_146170 chr7 44501195 44501958 + 0 NA promoter-TSS (ENSMUSG00000108607.2) processed_transcript-promoter-TSS (ENSMUSG00000108607.2) -2178 ENSMUSG00000108607.2 ENSMUSG00000108607 ENSMUST00000207290 Gm44646 processed_transcript Interval_77857 chr18 4737677 4738009 + 0 NA Intergenic Intergenic -5233 ENSMUSG00000117585.1 ENSMUSG00000117585 ENSMUST00000234879 Gm5047 processed_pseudogene Interval_52270 chr14 41205956 41206964 + 0 NA Intergenic Intergenic -14807 ENSMUSG00000114927.1 ENSMUSG00000114927 ENSMUST00000224939 Gm47114 processed_pseudogene Interval_160444 chr8 109542034 109542726 + 0 NA intron (ENSMUSG00000031727.8, intron 19 of 19) protein_coding-intron (ENSMUSG00000031727.8, intron 20 of 20) 9744 ENSMUSG00000037993.8 ENSMUSG00000037993 ENSMUST00000212667 Dhx38 protein_coding Interval_115597 chr4 101252007 101252444 + 0 NA intron (ENSMUSG00000028530.14, intron 1 of 2) protein_coding-intron (ENSMUSG00000028530.14, intron 1 of 24) 13056 ENSMUSG00000028530.14 ENSMUSG00000028530 ENSMUST00000125968 Jak1 protein_coding Interval_11945 chr1 187377054 187379157 + 0 NA promoter-TSS (ENSMUSG00000104245.1) antisense-promoter-TSS (ENSMUSG00000104245.1) -636 ENSMUSG00000104245.1 ENSMUSG00000104245 ENSMUST00000192285 Gm38155 antisense Interval_13693 chr10 21082360 21083104 + 0 NA Intergenic Intergenic 12887 ENSMUSG00000019986.17 ENSMUSG00000019986 ENSMUST00000215543 Ahi1 protein_coding Interval_10727 chr1 173589393 173589647 + 0 NA exon (ENSMUSG00000073491.11, exon 4 of 7) protein_coding-exon (ENSMUSG00000073491.11, exon 4 of 7) 9589 ENSMUSG00000073491.11 ENSMUSG00000073491 ENSMUST00000180215 Ifi213 protein_coding Interval_106731 chr3 100167782 100167994 + 0 NA intron (ENSMUSG00000027865.10, intron 1 of 12) protein_coding-intron (ENSMUSG00000027865.10, intron 1 of 13) -5491 ENSMUSG00000033285.15 ENSMUSG00000033285 ENSMUST00000197602 Wdr3 protein_coding Interval_85810 chr19 32102810 32103129 + 0 NA intron (ENSMUSG00000024887.10, intron 1 of 23) protein_coding-intron (ENSMUSG00000024887.10, intron 1 of 23) -86165 ENSMUSG00000024887.10 ENSMUSG00000024887 ENSMUST00000235395 Asah2 protein_coding Interval_26029 chr11 53566966 53567954 + 0 NA promoter-TSS (ENSMUSG00000018395.19) protein_coding-promoter-TSS (ENSMUSG00000018395.19) 63 ENSMUSG00000018395.19 ENSMUSG00000018395 ENSMUST00000130037 Kif3a protein_coding Interval_114026 chr4 62603924 62604460 + 0 NA promoter-TSS (ENSMUSG00000059810.18) protein_coding-promoter-TSS (ENSMUSG00000059810.18) -19517 ENSMUSG00000059810.18 ENSMUSG00000059810 ENSMUST00000153875 Rgs3 protein_coding Interval_82427 chr18 73920659 73921029 + 0 NA Intergenic Intergenic 61457 ENSMUSG00000064036.15 ENSMUSG00000064036 ENSMUST00000134847 Mro protein_coding Interval_31214 chr11 98936180 98938386 + 0 NA promoter-TSS (ENSMUSG00000037992.16) protein_coding-promoter-TSS (ENSMUSG00000037992.16) -2428 ENSMUSG00000037992.16 ENSMUSG00000037992 ENSMUST00000107473 Rara protein_coding Interval_101813 chr3 9684465 9684747 + 0 NA Intergenic Intergenic 28086 ENSMUSG00000103876.1 ENSMUSG00000103876 ENSMUST00000195844 Gm17806 processed_pseudogene Interval_130616 chr5 129233178 129234595 + 0 NA Intergenic Intergenic -105369 ENSMUSG00000060419.8 ENSMUSG00000060419 ENSMUST00000140155 Rps16-ps2 processed_pseudogene Interval_9538 chr1 158953601 158954277 + 0 NA intron (ENSMUSG00000073530.11, intron 1 of 21) protein_coding-intron (ENSMUSG00000073530.11, intron 1 of 21) 6442 ENSMUSG00000073530.11 ENSMUSG00000073530 ENSMUST00000159892 Pappa2 protein_coding Interval_74295 chr17 48623672 48625217 + 0 NA Intergenic Intergenic 6621 ENSMUSG00000077708.1 ENSMUSG00000077708 ENSMUST00000104520 Gm24071 snoRNA Interval_167781 chr9 72681347 72682662 + 0 NA intron (ENSMUSG00000032216.15, intron 5 of 7) protein_coding-intron (ENSMUSG00000032216.15, intron 5 of 28) -5220 ENSMUSG00000104273.1 ENSMUSG00000104273 ENSMUST00000195338 A530064N14Rik TEC Interval_105700 chr3 88636755 88637098 + 0 NA exon (ENSMUSG00000028059.16, exon 5 of 5) protein_coding-exon (ENSMUSG00000028059.16, exon 5 of 5) -15865 ENSMUSG00000093390.1 ENSMUSG00000093390 ENSMUST00000177314 Gm20652 antisense Interval_125913 chr5 75644945 75645688 + 0 NA promoter-TSS (ENSMUSG00000005672.12) protein_coding-promoter-TSS (ENSMUSG00000005672.12) -3778 ENSMUSG00000005672.12 ENSMUSG00000005672 ENSMUST00000201240 Kit protein_coding Interval_75910 chr17 72938177 72938849 + 0 NA intron (ENSMUSG00000024063.13, intron 2 of 2) protein_coding-intron (ENSMUSG00000024063.13, intron 2 of 2) 17325 ENSMUSG00000024063.13 ENSMUSG00000024063 ENSMUST00000148556 Lbh protein_coding Interval_101304 chr2 180260988 180261231 + 0 NA exon (ENSMUSG00000038990.14, exon 7 of 10) protein_coding-exon (ENSMUSG00000038990.14, exon 7 of 10) 656 ENSMUSG00000038990.14 ENSMUSG00000038990 ENSMUST00000135301 Cables2 protein_coding Interval_26790 chr11 60508793 60510151 + 0 NA promoter-TSS (ENSMUSG00000042678.17) protein_coding-promoter-TSS (ENSMUSG00000042678.17) -26909 ENSMUSG00000042650.3 ENSMUSG00000042650 ENSMUST00000044250 Alkbh5 protein_coding Interval_5926 chr1 93272229 93273050 + 0 NA intron (ENSMUSG00000047793.13, intron 12 of 22) protein_coding-intron (ENSMUSG00000047793.13, intron 12 of 30) -1910 ENSMUSG00000098997.1 ENSMUSG00000098997 ENSMUST00000185062 Mir6901 miRNA Interval_18335 chr10 85013265 85014183 + 0 NA intron (ENSMUSG00000035620.15, intron 2 of 2) protein_coding-intron (ENSMUSG00000035620.15, intron 9 of 9) 76331 ENSMUSG00000035620.15 ENSMUSG00000035620 ENSMUST00000214820 Ric8b protein_coding Interval_80625 chr18 44749802 44750115 + 0 NA intron (ENSMUSG00000071856.10, intron 2 of 18) protein_coding-intron (ENSMUSG00000071856.10, intron 2 of 18) -71175 ENSMUSG00000117832.1 ENSMUSG00000117832 ENSMUST00000237858 Gm50263 processed_pseudogene Interval_56753 chr14 121862709 121863569 + 0 NA Intergenic Intergenic 15365 ENSMUSG00000102112.1 ENSMUSG00000102112 ENSMUST00000185880 1810041H14Rik antisense Interval_96841 chr2 128812391 128813138 + 0 NA Intergenic Intergenic -5620 ENSMUSG00000014353.15 ENSMUSG00000014353 ENSMUST00000143686 Tmem87b protein_coding Interval_144729 chr7 27818242 27819627 + 0 NA TTS (ENSMUSG00000030604.9) protein_coding-TTS (ENSMUSG00000030604.9) 11738 ENSMUSG00000030604.9 ENSMUSG00000030604 ENSMUST00000080175 Zfp626 protein_coding Interval_164249 chr9 34421882 34422114 + 0 NA Intergenic Intergenic -37183 ENSMUSG00000110925.1 ENSMUSG00000110925 ENSMUST00000216503 Gm47858 lincRNA Interval_9617 chr1 160275512 160275765 + 0 NA intron (ENSMUSG00000104302.1, intron 2 of 4) protein_coding-intron (ENSMUSG00000026721.16, intron 19 of 20) 11314 ENSMUSG00000104302.1 ENSMUSG00000104302 ENSMUST00000194105 Gm36975 antisense Interval_58210 chr15 30827822 30827996 + 0 NA intron (ENSMUSG00000022240.10, intron 11 of 21) protein_coding-intron (ENSMUSG00000022240.10, intron 11 of 22) 134969 ENSMUSG00000115012.1 ENSMUSG00000115012 ENSMUST00000228332 9630009A06Rik antisense Interval_63427 chr15 101006654 101007451 + 0 NA intron (ENSMUSG00000023033.14, intron 13 of 26) protein_coding-intron (ENSMUSG00000023033.14, intron 13 of 26) 36930 ENSMUSG00000023033.14 ENSMUSG00000023033 ENSMUST00000201246 Scn8a protein_coding Interval_82593 chr18 75350233 75350758 + 0 NA Intergenic Intergenic 16593 ENSMUSG00000092569.1 ENSMUSG00000092569 ENSMUST00000174338 Gm20544 processed_transcript Interval_157367 chr8 69893581 69894430 + 0 NA promoter-TSS (ENSMUSG00000048967.16) protein_coding-promoter-TSS (ENSMUSG00000048967.16) -6318 ENSMUSG00000044006.8 ENSMUSG00000044006 ENSMUST00000057831 Cilp2 protein_coding Interval_168344 chr9 79085830 79086626 + 0 NA Intergenic Intergenic -56476 ENSMUSG00000111363.1 ENSMUSG00000111363 ENSMUST00000213359 Gm35024 lincRNA Interval_107482 chr3 108011352 108011926 + 0 NA TTS (ENSMUSG00000058135.12) protein_coding-TTS (ENSMUSG00000058135.12) 1677 ENSMUSG00000058135.12 ENSMUSG00000058135 ENSMUST00000126593 Gstm1 protein_coding Interval_132403 chr5 144735022 144735404 + 0 NA TTS (ENSMUSG00000043388.8) protein_coding-TTS (ENSMUSG00000043388.8) -11416 ENSMUSG00000082524.3 ENSMUSG00000082524 ENSMUST00000121256 Gm6272 processed_pseudogene Interval_45579 chr13 56027570 56028226 + 0 NA intron (ENSMUSG00000114229.1, intron 1 of 1) processed_pseudogene-intron (ENSMUSG00000114229.1, intron 1 of 1) 2336 ENSMUSG00000114229.1 ENSMUSG00000114229 ENSMUST00000225745 Gm47072 processed_pseudogene Interval_127721 chr5 107074500 107075604 + 0 NA Intergenic Intergenic 26216 ENSMUSG00000106554.1 ENSMUSG00000106554 ENSMUST00000199486 Gm33474 lincRNA Interval_2936 chr1 51288841 51290034 + 0 NA exon (ENSMUSG00000045954.7, exon 1 of 2) protein_coding-exon (ENSMUSG00000045954.7, exon 1 of 2) 311 ENSMUSG00000045954.7 ENSMUSG00000045954 ENSMUST00000051572 Cavin2 protein_coding Interval_19296 chr10 96285333 96286338 + 0 NA Intergenic Intergenic -23510 ENSMUSG00000112234.1 ENSMUSG00000112234 ENSMUST00000220354 Gm48427 lincRNA Interval_81358 chr18 59081654 59082321 + 0 NA Intergenic Intergenic 19521 ENSMUSG00000050875.11 ENSMUSG00000050875 ENSMUST00000175830 Minar2 protein_coding Interval_69799 chr16 96610534 96611022 + 0 NA intron (ENSMUSG00000050272.10, intron 2 of 5) protein_coding-intron (ENSMUSG00000050272.10, intron 30 of 32) 11976 ENSMUSG00000050272.10 ENSMUSG00000050272 ENSMUST00000232829 Dscam protein_coding Interval_156494 chr8 48734783 48735013 + 0 NA intron (ENSMUSG00000031561.16, intron 1 of 2) protein_coding-intron (ENSMUSG00000031561.16, intron 1 of 2) -103729 ENSMUSG00000110509.1 ENSMUSG00000110509 ENSMUST00000212961 Gm45772 processed_pseudogene Interval_35939 chr12 32204213 32204505 + 0 NA exon (ENSMUSG00000020573.17, exon 2 of 11) protein_coding-exon (ENSMUSG00000020573.17, exon 2 of 11) 3979 ENSMUSG00000020573.17 ENSMUSG00000020573 ENSMUST00000126814 Pik3cg protein_coding Interval_24003 chr11 29358061 29358483 + 0 NA Intergenic Intergenic 4073 ENSMUSG00000082721.1 ENSMUSG00000082721 ENSMUST00000121878 Gm12087 processed_pseudogene Interval_49308 chr13 110552509 110552844 + 0 NA Intergenic Intergenic -75320 ENSMUSG00000109853.1 ENSMUSG00000109853 ENSMUST00000211420 Gm33045 lincRNA Interval_81614 chr18 62102998 62103566 + 0 NA Intergenic Intergenic -39336 ENSMUSG00000118370.1 ENSMUSG00000118370 ENSMUST00000236502 Gm41750 lincRNA Interval_151230 chr7 119895245 119896500 + 0 NA promoter-TSS (ENSMUSG00000030922.12) protein_coding-promoter-TSS (ENSMUSG00000030922.12) 5 ENSMUSG00000030922.12 ENSMUSG00000030922 ENSMUST00000207680 Lyrm1 protein_coding Interval_162923 chr9 13296270 13298476 + 0 NA promoter-TSS (ENSMUSG00000031925.17) protein_coding-promoter-TSS (ENSMUSG00000031925.17) -10841 ENSMUSG00000111212.1 ENSMUSG00000111212 ENSMUST00000213137 Gm47087 TEC Interval_163955 chr9 29655046 29655322 + 0 NA intron (ENSMUSG00000059974.10, intron 1 of 2) protein_coding-intron (ENSMUSG00000059974.10, intron 1 of 7) -62674 ENSMUSG00000085638.1 ENSMUSG00000085638 ENSMUST00000141752 Gm15521 sense_intronic Interval_53713 chr14 61085466 61085888 + 0 NA Intergenic Intergenic 22250 ENSMUSG00000115627.1 ENSMUSG00000115627 ENSMUST00000227839 Gm41168 lincRNA Interval_32268 chr11 106619466 106620610 + 0 NA Intergenic Intergenic 43288 ENSMUSG00000020717.19 ENSMUSG00000020717 ENSMUST00000124958 Pecam1 protein_coding Interval_7574 chr1 132278335 132278539 + 0 NA intron (ENSMUSG00000101549.1, intron 2 of 3) lincRNA-intron (ENSMUSG00000101549.1, intron 2 of 3) 1974 ENSMUSG00000101549.1 ENSMUSG00000101549 ENSMUST00000185761 Gm29630 lincRNA Interval_91148 chr2 35463129 35464551 + 0 NA promoter-TSS (ENSMUSG00000035778.17) protein_coding-promoter-TSS (ENSMUSG00000035778.17) 20065 ENSMUSG00000081841.1 ENSMUSG00000081841 ENSMUST00000119445 Gm13444 processed_pseudogene Interval_63304 chr15 100214904 100215180 + 0 NA intron (ENSMUSG00000023026.16, intron 37 of 37) protein_coding-intron (ENSMUSG00000023026.16, intron 32 of 32) -17156 ENSMUSG00000023027.13 ENSMUSG00000023027 ENSMUST00000166435 Atf1 protein_coding Interval_61690 chr15 83423783 83423974 + 0 NA promoter-TSS (ENSMUSG00000016664.16) protein_coding-promoter-TSS (ENSMUSG00000016664.16) -17815 ENSMUSG00000049414.7 ENSMUSG00000049414 ENSMUST00000079706 Gm5417 processed_pseudogene Interval_75029 chr17 61506111 61506358 + 0 NA Intergenic Intergenic 108924 ENSMUSG00000117016.1 ENSMUSG00000117016 ENSMUST00000233539 Gm6174 processed_pseudogene Interval_25182 chr11 44840986 44842462 + 0 NA intron (ENSMUSG00000057098.14, intron 6 of 15) protein_coding-intron (ENSMUSG00000057098.14, intron 6 of 15) -179048 ENSMUSG00000085784.1 ENSMUSG00000085784 ENSMUST00000130493 Gm12158 antisense Interval_120696 chr4 150155352 150156032 + 0 NA intron (ENSMUSG00000062064.6, intron 4 of 11) protein_coding-intron (ENSMUSG00000062064.6, intron 4 of 11) -2136 ENSMUSG00000062064.6 ENSMUSG00000062064 ENSMUST00000133379 Slc2a7 protein_coding Interval_174119 chrX 135742199 135743344 + 0 NA promoter-TSS (ENSMUSG00000072969.2) protein_coding-promoter-TSS (ENSMUSG00000072969.2) 36 ENSMUSG00000072969.2 ENSMUSG00000072969 ENSMUST00000128847 Armcx5 protein_coding Interval_155646 chr8 35567127 35567503 + 0 NA Intergenic Intergenic -21641 ENSMUSG00000070056.6 ENSMUSG00000070056 ENSMUST00000154989 Mfhas1 protein_coding Interval_1094 chr1 15622080 15622268 + 0 NA intron (ENSMUSG00000092083.4, intron 2 of 2) protein_coding-intron (ENSMUSG00000092083.4, intron 1 of 1) 63872 ENSMUSG00000088829.1 ENSMUSG00000088829 ENSMUST00000158204 Gm25227 snoRNA Interval_49307 chr13 110531494 110532090 + 0 NA Intergenic Intergenic -96204 ENSMUSG00000109853.1 ENSMUSG00000109853 ENSMUST00000211420 Gm33045 lincRNA Interval_169232 chr9 95675525 95677110 + 0 NA promoter-TSS (ENSMUSG00000100825.1) processed_pseudogene-promoter-TSS (ENSMUSG00000100825.1) -300 ENSMUSG00000100825.1 ENSMUSG00000100825 ENSMUST00000188629 Itpa-ps2 processed_pseudogene Interval_161930 chr8 123834331 123835966 + 0 NA TTS (ENSMUSG00000019478.16) protein_coding-TTS (ENSMUSG00000019478.16) 5637 ENSMUSG00000085030.1 ENSMUSG00000085030 ENSMUST00000138442 2810455O05Rik lincRNA Interval_116753 chr4 117101237 117101510 + 0 NA intron (ENSMUSG00000028681.11, intron 2 of 21) protein_coding-intron (ENSMUSG00000028681.11, intron 2 of 21) -3547 ENSMUSG00000028681.11 ENSMUSG00000028681 ENSMUST00000123226 Ptch2 protein_coding Interval_168585 chr9 83852027 83852888 + 0 NA intron (ENSMUSG00000038379.15, intron 11 of 20) protein_coding-intron (ENSMUSG00000038379.15, intron 11 of 21) 17691 ENSMUSG00000038379.15 ENSMUSG00000038379 ENSMUST00000191484 Ttk protein_coding Interval_24743 chr11 36526339 36526899 + 0 NA intron (ENSMUSG00000049336.16, intron 2 of 28) protein_coding-intron (ENSMUSG00000049336.16, intron 2 of 28) -196263 ENSMUSG00000065173.1 ENSMUSG00000065173 ENSMUST00000083239 Gm22127 snRNA Interval_121283 chr4 154718679 154719403 + 0 NA Intergenic Intergenic -51174 ENSMUSG00000051276.4 ENSMUSG00000051276 ENSMUST00000060062 Actrt2 protein_coding Interval_33311 chr11 115849337 115851179 + 0 NA exon (ENSMUSG00000020782.18, exon 14 of 26) protein_coding-exon (ENSMUSG00000020782.18, exon 14 of 26) 26200 ENSMUSG00000020782.18 ENSMUSG00000020782 ENSMUST00000132999 Llgl2 protein_coding Interval_121111 chr4 153175542 153176362 + 0 NA Intergenic Intergenic -29009 ENSMUSG00000085648.1 ENSMUSG00000085648 ENSMUST00000151703 Gm13173 lincRNA Interval_22391 chr11 9420627 9420866 + 0 NA intron (ENSMUSG00000004668.14, intron 35 of 61) protein_coding-intron (ENSMUSG00000004668.14, intron 35 of 61) 227295 ENSMUSG00000004668.14 ENSMUSG00000004668 ENSMUST00000151522 Abca13 protein_coding Interval_47647 chr13 90745024 90745758 + 0 NA Intergenic Intergenic -14721 ENSMUSG00000106360.1 ENSMUSG00000106360 ENSMUST00000198614 Gm44338 miRNA Interval_146835 chr7 52835607 52836020 + 0 NA Intergenic Intergenic 80348 ENSMUSG00000074092.5 ENSMUSG00000074092 ENSMUST00000117187 Gm6181 processed_pseudogene Interval_80149 chr18 37880016 37880664 + 0 NA intron (ENSMUSG00000024456.16, intron 16 of 25) protein_coding-intron (ENSMUSG00000024456.16, intron 18 of 27) 17602 ENSMUSG00000024456.16 ENSMUSG00000024456 ENSMUST00000129688 Diaph1 protein_coding Interval_127548 chr5 105109727 105110479 + 0 NA intron (ENSMUSG00000029298.15, intron 1 of 10) protein_coding-intron (ENSMUSG00000034438.16, intron 1 of 9) -27340 ENSMUSG00000029298.15 ENSMUSG00000029298 ENSMUST00000199453 Gbp9 protein_coding Interval_173541 chrX 99052279 99052722 + 0 NA intron (ENSMUSG00000031216.13, intron 1 of 2) protein_coding-intron (ENSMUSG00000031216.13, intron 1 of 13) 29902 ENSMUSG00000083310.2 ENSMUSG00000083310 ENSMUST00000119692 Gm5760 processed_pseudogene Interval_132761 chr5 147716338 147717676 + 0 NA intron (ENSMUSG00000029648.13, intron 1 of 12) protein_coding-intron (ENSMUSG00000029648.13, intron 1 of 11) -28509 ENSMUSG00000106845.1 ENSMUSG00000106845 ENSMUST00000202338 Gm43156 lincRNA Interval_4519 chr1 74770894 74773637 + 0 NA intron (ENSMUSG00000033227.7, intron 1 of 3) protein_coding-intron (ENSMUSG00000033227.7, intron 1 of 3) 5140 ENSMUSG00000099472.1 ENSMUSG00000099472 ENSMUST00000188031 Gm29539 antisense Interval_98012 chr2 146660828 146661594 + 0 NA Intergenic Intergenic 94494 ENSMUSG00000080870.1 ENSMUSG00000080870 ENSMUST00000119851 Gm14111 processed_pseudogene Interval_61393 chr15 81312878 81313540 + 0 NA promoter-TSS (ENSMUSG00000115970.1) lincRNA-promoter-TSS (ENSMUSG00000115970.1) 47568 ENSMUSG00000022404.8 ENSMUSG00000022404 ENSMUST00000231078 Slc25a17 protein_coding Interval_155977 chr8 41381098 41382495 + 0 NA Intergenic Intergenic -7023 ENSMUSG00000031591.14 ENSMUSG00000031591 ENSMUST00000143057 Asah1 protein_coding Interval_77737 chr17 94810287 94810947 + 0 NA TTS (ENSMUSG00000117653.1) TEC-TTS (ENSMUSG00000117653.1) 2305 ENSMUSG00000117653.1 ENSMUSG00000117653 ENSMUST00000234275 Gm50009 TEC Interval_103722 chr3 52028177 52028431 + 0 NA intron (ENSMUSG00000061143.15, intron 1 of 4) protein_coding-intron (ENSMUSG00000061143.15, intron 1 of 4) -24279 ENSMUSG00000102423.1 ENSMUSG00000102423 ENSMUST00000192845 Gm37465 TEC Interval_23352 chr11 21698821 21699034 + 0 NA intron (ENSMUSG00000020319.9, intron 1 of 3) protein_coding-intron (ENSMUSG00000020319.9, intron 9 of 17) 3798 ENSMUSG00000020319.9 ENSMUSG00000020319 ENSMUST00000128794 Wdpcp protein_coding Interval_165292 chr9 46060199 46060653 + 0 NA intron (ENSMUSG00000034135.15, intron 1 of 24) protein_coding-intron (ENSMUSG00000034135.15, intron 1 of 22) -62704 ENSMUSG00000034135.15 ENSMUSG00000034135 ENSMUST00000138338 Sik3 protein_coding Interval_141039 chr6 124552739 124553301 + 0 NA Intergenic Intergenic -8195 ENSMUSG00000107568.1 ENSMUSG00000107568 ENSMUST00000204553 Gm18840 unprocessed_pseudogene Interval_30502 chr11 94796618 94797342 + 0 NA TTS (ENSMUSG00000083227.1) unprocessed_pseudogene-TTS (ENSMUSG00000083227.1) 797 ENSMUSG00000083227.1 ENSMUSG00000083227 ENSMUST00000120297 Gm11546 unprocessed_pseudogene Interval_22573 chr11 11872652 11873653 + 0 NA TTS (ENSMUSG00000020182.16) protein_coding-TTS (ENSMUSG00000020182.16) 5029 ENSMUSG00000086391.1 ENSMUSG00000086391 ENSMUST00000151032 1700042O10Rik antisense Interval_170936 chr9 112495778 112496050 + 0 NA Intergenic Intergenic 6298 ENSMUSG00000098345.1 ENSMUSG00000098345 ENSMUST00000183711 Gm27847 miRNA Interval_12826 chr10 5865792 5866210 + 0 NA intron (ENSMUSG00000019775.17, intron 1 of 4) protein_coding-intron (ENSMUSG00000019775.17, intron 3 of 6) -50246 ENSMUSG00000019774.8 ENSMUSG00000019774 ENSMUST00000145687 Mtrf1l protein_coding Interval_153302 chr7 143469897 143470228 + 0 NA Intergenic Intergenic -3706 ENSMUSG00000000154.16 ENSMUSG00000000154 ENSMUST00000105917 Slc22a18 protein_coding Interval_88198 chr19 60602272 60603179 + 0 NA Intergenic Intergenic -8562 ENSMUSG00000117790.1 ENSMUSG00000117790 ENSMUST00000236155 Gm46652 lincRNA Interval_138877 chr6 92825773 92826292 + 0 NA intron (ENSMUSG00000030022.14, intron 18 of 29) protein_coding-intron (ENSMUSG00000048636.7, intron 1 of 4) -1600 ENSMUSG00000048636.7 ENSMUSG00000048636 ENSMUST00000133858 A730049H05Rik protein_coding Interval_156150 chr8 45172317 45172737 + 0 NA intron (ENSMUSG00000110260.1, intron 4 of 4) lincRNA-intron (ENSMUSG00000110260.1, intron 4 of 4) -7308 ENSMUSG00000110231.1 ENSMUSG00000110231 ENSMUST00000209210 Gm6329 lincRNA Interval_31818 chr11 103121908 103122197 + 0 NA Intergenic Intergenic 5821 ENSMUSG00000048878.6 ENSMUSG00000048878 ENSMUST00000053063 Hexim1 protein_coding Interval_73904 chr17 45405724 45407234 + 0 NA intron (ENSMUSG00000023932.9, intron 13 of 15) protein_coding-intron (ENSMUSG00000023932.9, intron 13 of 15) 27062 ENSMUSG00000023932.9 ENSMUSG00000023932 ENSMUST00000232910 Cdc5l protein_coding Interval_2329 chr1 38096482 38096672 + 0 NA intron (ENSMUSG00000026082.11, intron 5 of 5) protein_coding-intron (ENSMUSG00000026082.11, intron 4 of 22) -19272 ENSMUSG00000103804.1 ENSMUSG00000103804 ENSMUST00000195028 Gm37062 sense_intronic Interval_91467 chr2 39086677 39087962 + 0 NA intron (ENSMUSG00000035236.17, intron 2 of 6) protein_coding-intron (ENSMUSG00000035236.17, intron 14 of 17) 12091 ENSMUSG00000035236.17 ENSMUSG00000035236 ENSMUST00000142872 Scai protein_coding Interval_121832 chr5 8628289 8628594 + 0 NA Intergenic Intergenic -5489 ENSMUSG00000040570.14 ENSMUSG00000040570 ENSMUST00000115378 Rundc3b protein_coding Interval_3746 chr1 62736040 62738491 + 0 NA intron (ENSMUSG00000025969.15, intron 2 of 2) protein_coding-intron (ENSMUSG00000025969.15, intron 2 of 15) -19192 ENSMUSG00000100811.1 ENSMUSG00000100811 ENSMUST00000189205 Gm29083 antisense Interval_70675 chr17 12966021 12966397 + 0 NA TTS (ENSMUSG00000060475.13) protein_coding-TTS (ENSMUSG00000060475.13) 3441 ENSMUSG00000089695.2 ENSMUSG00000089695 ENSMUST00000160654 Gm15946 processed_pseudogene Interval_168298 chr9 78511762 78511988 + 0 NA Intergenic Intergenic -8671 ENSMUSG00000111417.1 ENSMUSG00000111417 ENSMUST00000214586 Gm47430 lincRNA Interval_8642 chr1 145955921 145956283 + 0 NA Intergenic Intergenic -464334 ENSMUSG00000090323.2 ENSMUSG00000090323 ENSMUST00000163646 Gm5263 processed_pseudogene Interval_52150 chr14 37162715 37163187 + 0 NA Intergenic Intergenic 20114 ENSMUSG00000114675.1 ENSMUSG00000114675 ENSMUST00000224221 Gm18834 processed_pseudogene Interval_44168 chr13 41446374 41446656 + 0 NA intron (ENSMUSG00000021365.15, intron 1 of 1) protein_coding-intron (ENSMUSG00000021365.15, intron 1 of 7) 31385 ENSMUSG00000114537.1 ENSMUSG00000114537 ENSMUST00000223906 Gm48569 TEC Interval_120303 chr4 145300158 145300726 + 0 NA intron (ENSMUSG00000028602.12, intron 2 of 12) protein_coding-intron (ENSMUSG00000028602.12, intron 2 of 12) 14722 ENSMUSG00000028602.12 ENSMUSG00000028602 ENSMUST00000123027 Tnfrsf8 protein_coding Interval_27596 chr11 68953778 68954911 + 0 NA intron (ENSMUSG00000052921.13, intron 3 of 16) protein_coding-intron (ENSMUSG00000052921.13, intron 1 of 14) -6519 ENSMUSG00000052921.13 ENSMUSG00000052921 ENSMUST00000108670 Arhgef15 protein_coding Interval_53903 chr14 63240190 63241541 + 0 NA TTS (ENSMUSG00000021944.15) protein_coding-TTS (ENSMUSG00000021944.15) 30259 ENSMUSG00000021944.15 ENSMUSG00000021944 ENSMUST00000156782 Gata4 protein_coding Interval_46669 chr13 68561178 68561392 + 0 NA TTS (ENSMUSG00000034617.7) protein_coding-TTS (ENSMUSG00000034617.7) 20819 ENSMUSG00000034617.7 ENSMUSG00000034617 ENSMUST00000221800 Mtrr protein_coding Interval_165439 chr9 47920655 47920869 + 0 NA Intergenic Intergenic 27399 ENSMUSG00000111668.1 ENSMUSG00000111668 ENSMUST00000215015 Gm47213 processed_pseudogene Interval_111299 chr4 18021509 18022235 + 0 NA intron (ENSMUSG00000028226.15, intron 5 of 11) protein_coding-intron (ENSMUSG00000028226.15, intron 4 of 9) -11645 ENSMUSG00000083387.1 ENSMUSG00000083387 ENSMUST00000122346 Gm11860 processed_pseudogene Interval_111664 chr4 25483181 25484704 + 0 NA Intergenic Intergenic 29633 ENSMUSG00000089327.1 ENSMUSG00000089327 ENSMUST00000158702 Gm25975 snoRNA Interval_143909 chr7 17084205 17084696 + 0 NA intron (ENSMUSG00000066760.12, intron 1 of 4) protein_coding-intron (ENSMUSG00000066760.12, intron 1 of 5) -3484 ENSMUSG00000066760.12 ENSMUSG00000066760 ENSMUST00000152671 Psg16 protein_coding Interval_141233 chr6 126102437 126103370 + 0 NA intron (ENSMUSG00000049107.13, intron 1 of 1) protein_coding-intron (ENSMUSG00000049107.13, intron 1 of 1) 62057 ENSMUSG00000049107.13 ENSMUSG00000049107 ENSMUST00000050484 Ntf3 protein_coding Interval_128170 chr5 111455731 111455940 + 0 NA exon (ENSMUSG00000070576.4, exon 2 of 2) protein_coding-exon (ENSMUSG00000070576.4, exon 2 of 2) 32246 ENSMUSG00000106560.1 ENSMUSG00000106560 ENSMUST00000196957 Gm43119 TEC Interval_111192 chr4 14582251 14582807 + 0 NA intron (ENSMUSG00000040569.13, intron 3 of 3) protein_coding-intron (ENSMUSG00000040569.13, intron 4 of 18) 38968 ENSMUSG00000040569.13 ENSMUSG00000040569 ENSMUST00000143105 Slc26a7 protein_coding Interval_140691 chr6 120603541 120604336 + 0 NA Intergenic Intergenic -23762 ENSMUSG00000107580.1 ENSMUSG00000107580 ENSMUST00000204159 Gm44124 TEC Interval_64501 chr16 12780184 12780761 + 0 NA intron (ENSMUSG00000116520.1, intron 2 of 11) lincRNA-intron (ENSMUSG00000116520.1, intron 2 of 11) -19106 ENSMUSG00000091416.2 ENSMUSG00000091416 ENSMUST00000171185 Gm6327 processed_pseudogene Interval_31370 chr11 100295005 100295795 + 0 NA Intergenic Intergenic 3729 ENSMUSG00000087265.1 ENSMUSG00000087265 ENSMUST00000153030 Gm12349 lincRNA Interval_143981 chr7 18748564 18751269 + 0 NA Intergenic Intergenic -4707 ENSMUSG00000096479.1 ENSMUSG00000096479 ENSMUST00000179697 Gm24464 snRNA Interval_23924 chr11 28377634 28377876 + 0 NA Intergenic Intergenic 17393 ENSMUSG00000084905.1 ENSMUSG00000084905 ENSMUST00000152849 Gm12081 antisense Interval_80543 chr18 43687342 43688442 + 0 NA promoter-TSS (ENSMUSG00000024502.10) protein_coding-promoter-TSS (ENSMUSG00000024502.10) 49665 ENSMUSG00000024503.3 ENSMUSG00000024503 ENSMUST00000025381 Spink1 protein_coding Interval_2928 chr1 50975173 50975574 + 0 NA intron (ENSMUSG00000026109.14, intron 4 of 9) protein_coding-intron (ENSMUSG00000026109.14, intron 4 of 9) -39940 ENSMUSG00000092906.1 ENSMUSG00000092906 ENSMUST00000175165 Gm25736 miRNA Interval_85522 chr19 27927287 27927806 + 0 NA intron (ENSMUSG00000040929.17, intron 1 of 9) protein_coding-intron (ENSMUSG00000040929.17, intron 1 of 15) -66651 ENSMUSG00000092182.1 ENSMUSG00000092182 ENSMUST00000172891 Gm20407 antisense Interval_34453 chr12 4251970 4252570 + 0 NA TTS (ENSMUSG00000020647.10) protein_coding-TTS (ENSMUSG00000020647.10) 11137 ENSMUSG00000111916.1 ENSMUSG00000111916 ENSMUST00000220337 4921501I09Rik antisense Interval_96331 chr2 121688999 121689335 + 0 NA intron (ENSMUSG00000027238.17, intron 1 of 7) protein_coding-intron (ENSMUSG00000027238.17, intron 1 of 13) 12558 ENSMUSG00000081264.1 ENSMUSG00000081264 ENSMUST00000117683 Gm14021 processed_pseudogene Interval_163408 chr9 21298755 21299809 + 0 NA TTS (ENSMUSG00000003309.14) protein_coding-TTS (ENSMUSG00000003309.14) -7974 ENSMUSG00000096472.2 ENSMUSG00000096472 ENSMUST00000213407 Cdkn2d protein_coding Interval_87471 chr19 52721531 52722269 + 0 NA Intergenic Intergenic -201342 ENSMUSG00000117896.1 ENSMUSG00000117896 ENSMUST00000237126 AA387883 lincRNA Interval_31880 chr11 103557080 103557493 + 0 NA intron (ENSMUSG00000034239.14, intron 7 of 13) protein_coding-intron (ENSMUSG00000034239.14, intron 7 of 13) 43819 ENSMUSG00000081676.1 ENSMUSG00000081676 ENSMUST00000119578 Gm11643 processed_pseudogene Interval_4948 chr1 82883417 82883761 + 0 NA intron (ENSMUSG00000026159.13, intron 7 of 12) protein_coding-intron (ENSMUSG00000026159.13, intron 8 of 12) -29736 ENSMUSG00000113880.1 ENSMUSG00000113880 ENSMUST00000220768 A030005L19Rik protein_coding Interval_77871 chr18 4909944 4910155 + 0 NA Intergenic Intergenic 97563 ENSMUSG00000097043.1 ENSMUSG00000097043 ENSMUST00000180904 Gm10556 lincRNA Interval_121288 chr4 154741426 154742161 + 0 NA Intergenic Intergenic -73926 ENSMUSG00000051276.4 ENSMUSG00000051276 ENSMUST00000060062 Actrt2 protein_coding Interval_1218 chr1 17240192 17240562 + 0 NA Intergenic Intergenic 10115 ENSMUSG00000100272.1 ENSMUSG00000100272 ENSMUST00000187478 Gm28785 processed_pseudogene Interval_62741 chr15 96572806 96573799 + 0 NA exon (ENSMUSG00000023169.15, exon 16 of 16) protein_coding-exon (ENSMUSG00000023169.15, exon 16 of 16) 68911 ENSMUSG00000023169.15 ENSMUSG00000023169 ENSMUST00000229253 Slc38a1 protein_coding Interval_3976 chr1 65289836 65290262 + 0 NA intron (ENSMUSG00000025946.13, intron 1 of 5) protein_coding-intron (ENSMUSG00000025946.13, intron 1 of 5) 7993 ENSMUSG00000025946.13 ENSMUSG00000025946 ENSMUST00000027083 Pth2r protein_coding Interval_19486 chr10 100111069 100111490 + 0 NA Intergenic Intergenic 23223 ENSMUSG00000019966.18 ENSMUSG00000019966 ENSMUST00000219881 Kitl protein_coding Interval_62171 chr15 88501400 88501833 + 0 NA Intergenic Intergenic -98686 ENSMUSG00000054117.8 ENSMUSG00000054117 ENSMUST00000066949 Zdhhc25 protein_coding Interval_148539 chr7 82260225 82261027 + 0 NA intron (ENSMUSG00000030638.13, intron 2 of 6) protein_coding-intron (ENSMUSG00000030638.13, intron 2 of 8) -81642 ENSMUSG00000109479.1 ENSMUSG00000109479 ENSMUST00000208587 Gm44919 TEC Interval_588 chr1 8287958 8288264 + 0 NA Intergenic Intergenic 165380 ENSMUSG00000102647.1 ENSMUSG00000102647 ENSMUST00000192338 Gm38024 TEC Interval_94437 chr2 91220422 91220963 + 0 NA intron (ENSMUSG00000002109.14, intron 3 of 8) protein_coding-intron (ENSMUSG00000002109.14, intron 3 of 9) 14639 ENSMUSG00000002109.14 ENSMUSG00000002109 ENSMUST00000028696 Ddb2 protein_coding Interval_114690 chr4 83867858 83868247 + 0 NA Intergenic Intergenic 20806 ENSMUSG00000085378.1 ENSMUSG00000085378 ENSMUST00000128214 Gm11415 lincRNA Interval_43182 chr13 24911482 24912525 + 0 NA TTS (ENSMUSG00000086796.2) antisense-TTS (ENSMUSG00000086796.2) 6383 ENSMUSG00000086796.2 ENSMUSG00000086796 ENSMUST00000225028 4932702P03Rik antisense Interval_162701 chr9 7912715 7912957 + 0 NA Intergenic Intergenic -52510 ENSMUSG00000032000.17 ENSMUSG00000032000 ENSMUST00000159672 Birc3 protein_coding Interval_157658 chr8 72125956 72126247 + 0 NA Intergenic Intergenic -9157 ENSMUSG00000031799.10 ENSMUSG00000031799 ENSMUST00000238492 Tpm4 protein_coding Interval_31579 chr11 101497027 101497211 + 0 NA exon (ENSMUSG00000017146.12, exon 5 of 5) protein_coding-exon (ENSMUSG00000017146.12, exon 5 of 5) 20893 ENSMUSG00000080839.1 ENSMUSG00000080839 ENSMUST00000119535 Gm11625 processed_pseudogene Interval_18589 chr10 88227474 88228036 + 0 NA intron (ENSMUSG00000020056.16, intron 4 of 5) protein_coding-intron (ENSMUSG00000020056.16, intron 5 of 6) 26492 ENSMUSG00000020056.16 ENSMUSG00000020056 ENSMUST00000182211 Washc3 protein_coding Interval_77862 chr18 4773823 4774110 + 0 NA Intergenic Intergenic 30890 ENSMUSG00000117585.1 ENSMUSG00000117585 ENSMUST00000234879 Gm5047 processed_pseudogene Interval_42082 chr13 8191586 8192685 + 0 NA Intergenic Intergenic 8359 ENSMUSG00000114126.1 ENSMUSG00000114126 ENSMUST00000221418 Gm48257 lincRNA Interval_26283 chr11 55685063 55685496 + 0 NA Intergenic Intergenic -77546 ENSMUSG00000000263.15 ENSMUSG00000000263 ENSMUST00000102716 Glra1 protein_coding Interval_151243 chr7 120116578 120118117 + 0 NA intron (ENSMUSG00000030917.13, intron 5 of 5) protein_coding-intron (ENSMUSG00000030917.13, intron 4 of 4) -14142 ENSMUSG00000109445.1 ENSMUSG00000109445 ENSMUST00000207051 4930560O18Rik TEC Interval_85505 chr19 27616375 27616593 + 0 NA Intergenic Intergenic 87523 ENSMUSG00000088266.1 ENSMUSG00000088266 ENSMUST00000157641 Gm24782 snoRNA Interval_112301 chr4 40204691 40206609 + 0 NA exon (ENSMUSG00000040296.15, exon 18 of 18) protein_coding-exon (ENSMUSG00000040296.15, exon 18 of 18) 34175 ENSMUSG00000040296.15 ENSMUSG00000040296 ENSMUST00000149539 Ddx58 protein_coding Interval_17943 chr10 80996716 80996987 + 0 NA intron (ENSMUSG00000048240.14, intron 2 of 4) protein_coding-intron (ENSMUSG00000048240.14, intron 2 of 3) 18062 ENSMUSG00000048240.14 ENSMUSG00000048240 ENSMUST00000126317 Gng7 protein_coding Interval_169418 chr9 97088016 97088280 + 0 NA exon (ENSMUSG00000084911.1, exon 2 of 2) antisense-exon (ENSMUSG00000084911.1, exon 2 of 2) 1879 ENSMUSG00000032449.13 ENSMUSG00000032449 ENSMUST00000152632 Slc25a36 protein_coding Interval_13900 chr10 24410179 24410406 + 0 NA Intergenic Intergenic -37198 ENSMUSG00000086148.1 ENSMUSG00000086148 ENSMUST00000134627 Gm15271 lincRNA Interval_41325 chr12 112850417 112852992 + 0 NA exon (ENSMUSG00000021298.8, exon 3 of 3) protein_coding-exon (ENSMUSG00000021298.8, exon 3 of 3) 16524 ENSMUSG00000021298.8 ENSMUSG00000021298 ENSMUST00000222776 Gpr132 protein_coding Interval_133876 chr6 13906358 13906694 + 0 NA intron (ENSMUSG00000097616.7, intron 2 of 2) lincRNA-intron (ENSMUSG00000097616.7, intron 2 of 2) 6922 ENSMUSG00000107562.1 ENSMUSG00000107562 ENSMUST00000203018 Gm44412 processed_pseudogene Interval_80782 chr18 47030871 47031445 + 0 NA intron (ENSMUSG00000042705.9, intron 5 of 6) protein_coding-intron (ENSMUSG00000042705.9, intron 5 of 6) -45677 ENSMUSG00000087857.1 ENSMUSG00000087857 ENSMUST00000157232 Gm22791 snoRNA Interval_57446 chr15 11009962 11010199 + 0 NA intron (ENSMUSG00000022243.10, intron 2 of 6) protein_coding-intron (ENSMUSG00000022243.10, intron 2 of 6) 9359 ENSMUSG00000022243.10 ENSMUSG00000022243 ENSMUST00000117100 Slc45a2 protein_coding Interval_44110 chr13 40942903 40945187 + 0 NA intron (ENSMUSG00000021360.16, intron 1 of 1) protein_coding-intron (ENSMUSG00000021360.16, intron 1 of 2) 5586 ENSMUSG00000114723.1 ENSMUSG00000114723 ENSMUST00000223891 5530402G07Rik TEC Interval_153449 chr7 144864056 144865119 + 0 NA exon (ENSMUSG00000050917.5, exon 3 of 3) protein_coding-exon (ENSMUSG00000050917.5, exon 3 of 3) 17220 ENSMUSG00000050917.5 ENSMUSG00000050917 ENSMUST00000060336 Fgf4 protein_coding Interval_149294 chr7 97066437 97066725 + 0 NA Intergenic Intergenic -15195 ENSMUSG00000004508.6 ENSMUSG00000004508 ENSMUST00000206791 Gab2 protein_coding Interval_148850 chr7 89288330 89288833 + 0 NA intron (ENSMUSG00000039428.11, intron 3 of 8) protein_coding-intron (ENSMUSG00000039428.11, intron 3 of 14) 2718 ENSMUSG00000094780.1 ENSMUSG00000094780 ENSMUST00000180212 Gm24659 miRNA Interval_85104 chr19 22881760 22882311 + 0 NA intron (ENSMUSG00000052387.16, intron 4 of 21) protein_coding-intron (ENSMUSG00000052387.16, intron 9 of 26) 131430 ENSMUSG00000065507.3 ENSMUSG00000065507 ENSMUST00000083573 Mir204 miRNA Interval_55258 chr14 79728455 79729598 + 0 NA Intergenic Intergenic -9405 ENSMUSG00000076453.1 ENSMUSG00000076453 ENSMUST00000103254 Mir759 miRNA Interval_33601 chr11 117436747 117436984 + 0 NA exon (ENSMUSG00000085336.1, exon 3 of 5) processed_transcript-exon (ENSMUSG00000085336.1, exon 3 of 5) 10687 ENSMUSG00000085336.1 ENSMUSG00000085336 ENSMUST00000151381 Gm11732 processed_transcript Interval_137732 chr6 81909989 81912485 + 0 NA promoter-TSS (ENSMUSG00000101404.1) lincRNA-promoter-TSS (ENSMUSG00000101404.1) -437 ENSMUSG00000101404.1 ENSMUSG00000101404 ENSMUST00000191101 1700009C05Rik lincRNA Interval_22490 chr11 11039249 11039561 + 0 NA Intergenic Intergenic -77080 ENSMUSG00000050830.17 ENSMUSG00000050830 ENSMUST00000154155 Vwc2 protein_coding Interval_42526 chr13 14564425 14565714 + 0 NA Intergenic Intergenic 5951 ENSMUSG00000113345.1 ENSMUSG00000113345 ENSMUST00000221005 Gm48096 processed_pseudogene Interval_54316 chr14 67599701 67600460 + 0 NA Intergenic Intergenic -11288 ENSMUSG00000114514.1 ENSMUSG00000114514 ENSMUST00000224499 Gm47010 processed_pseudogene Interval_148209 chr7 79860215 79861501 + 0 NA intron (ENSMUSG00000039062.15, intron 1 of 1) protein_coding-intron (ENSMUSG00000039062.15, intron 1 of 1) -28987 ENSMUSG00000108476.1 ENSMUSG00000108476 ENSMUST00000206387 Gm44974 TEC Interval_73929 chr17 45535902 45536763 + 0 NA intron (ENSMUSG00000023949.7, intron 2 of 3) protein_coding-intron (ENSMUSG00000023949.7, intron 3 of 4) 3279 ENSMUSG00000023949.7 ENSMUSG00000023949 ENSMUST00000233588 Tcte1 protein_coding Interval_104448 chr3 65769833 65770054 + 0 NA intron (ENSMUSG00000074579.14, intron 6 of 12) protein_coding-intron (ENSMUSG00000074579.14, intron 6 of 6) 1674 ENSMUSG00000065330.1 ENSMUSG00000065330 ENSMUST00000083396 Gm25755 snRNA Interval_16461 chr10 63003219 63003425 + 0 NA exon (ENSMUSG00000020070.18, exon 12 of 12) protein_coding-exon (ENSMUSG00000020070.18, exon 12 of 12) 4543 ENSMUSG00000084985.1 ENSMUSG00000084985 ENSMUST00000129470 Gm16135 antisense Interval_104940 chr3 79162073 79163079 + 0 NA intron (ENSMUSG00000062232.14, intron 3 of 4) protein_coding-intron (ENSMUSG00000062232.14, intron 3 of 3) -33798 ENSMUSG00000064693.1 ENSMUSG00000064693 ENSMUST00000082759 Gm24150 snRNA Interval_136681 chr6 57665141 57665334 + 0 NA TTS (ENSMUSG00000029798.11) protein_coding-TTS (ENSMUSG00000029798.11) 22343 ENSMUSG00000104204.1 ENSMUSG00000104204 ENSMUST00000194579 Gm37397 TEC Interval_104561 chr3 68230732 68231620 + 0 NA intron (ENSMUSG00000027777.15, intron 1 of 6) protein_coding-intron (ENSMUSG00000027777.15, intron 1 of 7) -102020 ENSMUSG00000102846.1 ENSMUSG00000102846 ENSMUST00000193165 Gm10292 processed_pseudogene Interval_135559 chr6 40413103 40413328 + 0 NA intron (ENSMUSG00000037172.14, intron 4 of 8) protein_coding-intron (ENSMUSG00000037172.14, intron 4 of 7) 18193 ENSMUSG00000037172.14 ENSMUSG00000037172 ENSMUST00000200994 Dennd11 protein_coding Interval_135195 chr6 37424481 37424886 + 0 NA intron (ENSMUSG00000038648.5, intron 1 of 11) protein_coding-intron (ENSMUSG00000038648.5, intron 1 of 11) -88148 ENSMUSG00000038648.5 ENSMUSG00000038648 ENSMUST00000128534 Creb3l2 protein_coding Interval_57202 chr15 7613029 7613408 + 0 NA Intergenic Intergenic -36976 ENSMUSG00000115033.1 ENSMUSG00000115033 ENSMUST00000227603 Gm49206 processed_pseudogene Interval_1984 chr1 35507873 35508110 + 0 NA Intergenic Intergenic 143306 ENSMUSG00000104417.1 ENSMUSG00000104417 ENSMUST00000195168 Gm37068 lincRNA Interval_154301 chr8 14160537 14161167 + 0 NA intron (ENSMUSG00000047495.15, intron 1 of 14) protein_coding-intron (ENSMUSG00000047495.15, intron 1 of 15) 24542 ENSMUSG00000085371.1 ENSMUSG00000085371 ENSMUST00000128343 Gm3160 processed_pseudogene Interval_86349 chr19 38940084 38940250 + 0 NA intron (ENSMUSG00000025001.11, intron 4 of 7) protein_coding-intron (ENSMUSG00000025001.11, intron 4 of 21) 8777 ENSMUSG00000025001.11 ENSMUSG00000025001 ENSMUST00000127968 Hells protein_coding Interval_120126 chr4 141986951 141987193 + 0 NA TTS (ENSMUSG00000085424.1) antisense-TTS (ENSMUSG00000085424.1) 4080 ENSMUSG00000085424.1 ENSMUSG00000085424 ENSMUST00000146094 Fhad1os1 antisense Interval_13414 chr10 18036760 18036945 + 0 NA Intergenic Intergenic -13762 ENSMUSG00000078453.3 ENSMUSG00000078453 ENSMUST00000220433 Abracl protein_coding Interval_43095 chr13 23933355 23934905 + 0 NA promoter-TSS (ENSMUSG00000050799.3) protein_coding-promoter-TSS (ENSMUSG00000050799.3) 26 ENSMUSG00000050799.3 ENSMUSG00000050799 ENSMUST00000052776 H2bc1 protein_coding Interval_22816 chr11 16295288 16295739 + 0 NA intron (ENSMUSG00000048834.16, intron 4 of 6) protein_coding-intron (ENSMUSG00000048834.16, intron 4 of 6) 37450 ENSMUSG00000048834.16 ENSMUSG00000048834 ENSMUST00000207256 Vstm2a protein_coding Interval_49822 chr13 116557598 116557784 + 0 NA TTS (ENSMUSG00000114731.1) lincRNA-TTS (ENSMUSG00000114731.1) 105900 ENSMUSG00000114347.1 ENSMUSG00000114347 ENSMUST00000225601 Gm47913 lincRNA Interval_15904 chr10 59108724 59109464 + 0 NA intron (ENSMUSG00000037990.18, intron 8 of 9) protein_coding-intron (ENSMUSG00000037990.18, intron 8 of 9) -86605 ENSMUSG00000088744.1 ENSMUSG00000088744 ENSMUST00000158119 Gm23223 snoRNA Interval_150019 chr7 104995047 104995286 + 0 NA TTS (ENSMUSG00000051172.7) protein_coding-TTS (ENSMUSG00000051172.7) 6863 ENSMUSG00000051172.7 ENSMUSG00000051172 ENSMUST00000050599 Olfr672 protein_coding Interval_118559 chr4 132503249 132503721 + 0 NA TTS (ENSMUSG00000086997.1) antisense-TTS (ENSMUSG00000086997.1) 6164 ENSMUSG00000086997.1 ENSMUSG00000086997 ENSMUST00000131733 Gm12981 antisense Interval_69300 chr16 92021812 92022758 + 0 NA Intergenic Intergenic -11874 ENSMUSG00000116834.1 ENSMUSG00000116834 ENSMUST00000232327 Gm18020 processed_pseudogene Interval_68151 chr16 65814693 65816163 + 0 NA promoter-TSS (ENSMUSG00000091243.2) protein_coding-promoter-TSS (ENSMUSG00000091243.2) -13185 ENSMUSG00000091243.2 ENSMUSG00000091243 ENSMUST00000228708 Vgll3 protein_coding Interval_171025 chr9 113789452 113789752 + 0 NA intron (ENSMUSG00000033392.16, intron 7 of 10) protein_coding-intron (ENSMUSG00000033392.16, intron 7 of 15) -13304 ENSMUSG00000087992.1 ENSMUSG00000087992 ENSMUST00000157367 Gm25059 snoRNA Interval_165333 chr9 46361634 46362003 + 0 NA intron (ENSMUSG00000110864.1, intron 4 of 4) lincRNA-intron (ENSMUSG00000110864.1, intron 4 of 4) 19043 ENSMUSG00000110864.1 ENSMUSG00000110864 ENSMUST00000214913 Gm31374 lincRNA Interval_108798 chr3 131552541 131553078 + 0 NA Intergenic Intergenic -12090 ENSMUSG00000028032.13 ENSMUSG00000028032 ENSMUST00000196638 Papss1 protein_coding Interval_949 chr1 13349517 13349782 + 0 NA intron (ENSMUSG00000005886.14, intron 1 of 12) protein_coding-intron (ENSMUSG00000005886.14, intron 1 of 22) -1445 ENSMUSG00000103085.1 ENSMUSG00000103085 ENSMUST00000195506 Gm38120 TEC Interval_130754 chr5 130169252 130169457 + 0 NA Intergenic Intergenic -17854 ENSMUSG00000025340.14 ENSMUSG00000025340 ENSMUST00000143865 Rabgef1 protein_coding Interval_52737 chr14 49204759 49205499 + 0 NA Intergenic Intergenic -12650 ENSMUSG00000115772.1 ENSMUSG00000115772 ENSMUST00000226956 Gm48935 lincRNA Interval_84558 chr19 12747163 12747387 + 0 NA Intergenic Intergenic 18357 ENSMUSG00000079415.2 ENSMUSG00000079415 ENSMUST00000112933 Cntf protein_coding Interval_64566 chr16 13366305 13366679 + 0 NA intron (ENSMUSG00000087526.2, intron 4 of 7) protein_coding-intron (ENSMUSG00000009569.14, intron 3 of 16) 8071 ENSMUSG00000009569.14 ENSMUSG00000009569 ENSMUST00000149359 Mrtfb protein_coding Interval_33657 chr11 117767479 117767781 + 0 NA exon (ENSMUSG00000025572.17, exon 19 of 20) protein_coding-exon (ENSMUSG00000025572.17, exon 19 of 20) 14568 ENSMUSG00000025572.17 ENSMUSG00000025572 ENSMUST00000127227 Tmc6 protein_coding Interval_157571 chr8 71483883 71484640 + 0 NA promoter-TSS (ENSMUSG00000034863.9) protein_coding-promoter-TSS (ENSMUSG00000034863.9) 1702 ENSMUSG00000034863.9 ENSMUSG00000034863 ENSMUST00000213016 Ano8 protein_coding Interval_154155 chr8 13099206 13099458 + 0 NA promoter-TSS (ENSMUSG00000038542.14) protein_coding-promoter-TSS (ENSMUSG00000038542.14) 5489 ENSMUSG00000038542.14 ENSMUSG00000038542 ENSMUST00000172443 Pcid2 protein_coding Interval_148784 chr7 87376585 87376814 + 0 NA intron (ENSMUSG00000030562.17, intron 19 of 19) protein_coding-intron (ENSMUSG00000030562.17, intron 17 of 17) 116693 ENSMUSG00000004651.6 ENSMUSG00000004651 ENSMUST00000207834 Tyr protein_coding Interval_131125 chr5 135280058 135281076 + 0 NA Intergenic Intergenic 16241 ENSMUSG00000106913.1 ENSMUSG00000106913 ENSMUST00000201947 9430007M09Rik TEC Interval_107362 chr3 106672407 106673699 + 0 NA Intergenic Intergenic -11945 ENSMUSG00000056260.15 ENSMUSG00000056260 ENSMUST00000150888 Lrif1 protein_coding Interval_32303 chr11 106770031 106770659 + 0 NA TTS (ENSMUSG00000020718.12) protein_coding-TTS (ENSMUSG00000020718.12) -5604 ENSMUSG00000088400.1 ENSMUSG00000088400 ENSMUST00000157775 Gm25889 snRNA Interval_31185 chr11 98767378 98768808 + 0 NA exon (ENSMUSG00000020889.11, exon 8 of 8) protein_coding-exon (ENSMUSG00000020889.11, exon 8 of 8) 2333 ENSMUSG00000020889.11 ENSMUSG00000020889 ENSMUST00000139220 Nr1d1 protein_coding Interval_76709 chr17 83630741 83633306 + 0 NA promoter-TSS (ENSMUSG00000045053.2) protein_coding-promoter-TSS (ENSMUSG00000045053.2) -128 ENSMUSG00000045053.2 ENSMUSG00000045053 ENSMUST00000051482 Kcng3 protein_coding Interval_142806 chr6 145862663 145864088 + 0 NA promoter-TSS (ENSMUSG00000108126.1) TEC-promoter-TSS (ENSMUSG00000108126.1) 78 ENSMUSG00000108126.1 ENSMUSG00000108126 ENSMUST00000203443 Gm43909 TEC Interval_70715 chr17 13802965 13803160 + 0 NA intron (ENSMUSG00000068036.16, intron 1 of 18) protein_coding-intron (ENSMUSG00000068036.16, intron 1 of 18) -41684 ENSMUSG00000117063.1 ENSMUSG00000117063 ENSMUST00000135850 Gm49936 lincRNA Interval_4244 chr1 72147766 72147975 + 0 NA Intergenic Intergenic -25869 ENSMUSG00000102123.1 ENSMUSG00000102123 ENSMUST00000191139 Gm4319 lincRNA Interval_26260 chr11 55485000 55486471 + 0 NA exon (ENSMUSG00000018583.5, exon 2 of 12) protein_coding-exon (ENSMUSG00000018583.5, exon 2 of 12) 3029 ENSMUSG00000087342.1 ENSMUSG00000087342 ENSMUST00000127764 Gm12238 sense_intronic Interval_95668 chr2 113884648 113885358 + 0 NA Intergenic Intergenic 35559 ENSMUSG00000096006.1 ENSMUSG00000096006 ENSMUST00000178049 Gm21596 processed_pseudogene Interval_97695 chr2 142879212 142879423 + 0 NA intron (ENSMUSG00000038844.10, intron 1 of 26) protein_coding-intron (ENSMUSG00000038844.10, intron 1 of 25) 22202 ENSMUSG00000038844.10 ENSMUSG00000038844 ENSMUST00000212106 Kif16b protein_coding Interval_77000 chr17 85522657 85523277 + 0 NA Intergenic Intergenic 19736 ENSMUSG00000117344.1 ENSMUSG00000117344 ENSMUST00000234073 Gm5231 processed_pseudogene Interval_162539 chr9 4026977 4028109 + 0 NA Intergenic Intergenic -186379 ENSMUSG00000110691.1 ENSMUSG00000110691 ENSMUST00000211927 Gm5363 processed_pseudogene Interval_104242 chr3 61751956 61752292 + 0 NA Intergenic Intergenic -289263 ENSMUSG00000098208.1 ENSMUSG00000098208 ENSMUST00000182720 Gm8349 processed_pseudogene Interval_84624 chr19 14504869 14505223 + 0 NA intron (ENSMUSG00000024642.17, intron 7 of 19) protein_coding-intron (ENSMUSG00000024642.17, intron 8 of 19) 90493 ENSMUSG00000024642.17 ENSMUSG00000024642 ENSMUST00000235975 Tle4 protein_coding Interval_81484 chr18 61046577 61046882 + 0 NA intron (ENSMUSG00000024620.11, intron 2 of 23) protein_coding-intron (ENSMUSG00000024620.11, intron 1 of 22) 1529 ENSMUSG00000024620.11 ENSMUSG00000024620 ENSMUST00000115274 Pdgfrb protein_coding Interval_37791 chr12 71997384 71997627 + 0 NA Intergenic Intergenic 51754 ENSMUSG00000114155.1 ENSMUSG00000114155 ENSMUST00000221336 Gm7986 processed_pseudogene Interval_739 chr1 10300641 10300984 + 0 NA Intergenic Intergenic -102010 ENSMUSG00000102556.1 ENSMUSG00000102556 ENSMUST00000192111 Gm37569 TEC Interval_165095 chr9 44533583 44533857 + 0 NA intron (ENSMUSG00000047880.15, intron 2 of 3) protein_coding-intron (ENSMUSG00000047880.15, intron 1 of 2) -7138 ENSMUSG00000047880.15 ENSMUSG00000047880 ENSMUST00000213357 Cxcr5 protein_coding Interval_155928 chr8 41088423 41090029 + 0 NA intron (ENSMUSG00000045636.16, intron 1 of 1) protein_coding-intron (ENSMUSG00000045636.16, intron 1 of 13) 36116 ENSMUSG00000085672.1 ENSMUSG00000085672 ENSMUST00000125903 Gm16193 antisense Interval_48041 chr13 95514814 95515601 + 0 NA intron (ENSMUSG00000021678.9, intron 1 of 1) protein_coding-intron (ENSMUSG00000021678.9, intron 1 of 1) 10020 ENSMUSG00000021678.9 ENSMUSG00000021678 ENSMUST00000022185 F2rl1 protein_coding Interval_129596 chr5 121209494 121211002 + 0 NA Intergenic Intergenic 3524 ENSMUSG00000029614.13 ENSMUSG00000029614 ENSMUST00000138621 Rpl6 protein_coding Interval_122987 chr5 28176470 28176851 + 0 NA Intergenic Intergenic -7820 ENSMUSG00000106160.1 ENSMUSG00000106160 ENSMUST00000199117 Gm43610 TEC Interval_112566 chr4 43266734 43267704 + 0 NA promoter-TSS (ENSMUSG00000028457.18) protein_coding-promoter-TSS (ENSMUSG00000028457.18) 34 ENSMUSG00000028457.18 ENSMUSG00000028457 ENSMUST00000102953 Atp8b5 protein_coding Interval_155284 chr8 30762175 30762416 + 0 NA Intergenic Intergenic 193902 ENSMUSG00000097044.1 ENSMUSG00000097044 ENSMUST00000180571 4933433F19Rik lincRNA Interval_6629 chr1 118407815 118408141 + 0 NA intron (ENSMUSG00000064302.13, intron 1 of 38) protein_coding-intron (ENSMUSG00000064302.13, intron 1 of 39) 45507 ENSMUSG00000077257.1 ENSMUSG00000077257 ENSMUST00000104069 Gm26080 snoRNA Interval_97237 chr2 132506940 132508397 + 0 NA intron (ENSMUSG00000086379.7, intron 3 of 3) antisense-intron (ENSMUSG00000086379.7, intron 2 of 2) -6520 ENSMUSG00000086250.1 ENSMUSG00000086250 ENSMUST00000134264 Gm14095 lincRNA Interval_105497 chr3 87034845 87035050 + 0 NA Intergenic Intergenic -11064 ENSMUSG00000104265.1 ENSMUSG00000104265 ENSMUST00000195222 Gm8869 processed_pseudogene Interval_63815 chr16 3632802 3633386 + 0 NA Intergenic Intergenic 3866 ENSMUSG00000118529.1 ENSMUSG00000118529 ENSMUST00000238802 AC140982.1 processed_pseudogene Interval_51643 chr14 31025595 31026526 + 0 NA intron (ENSMUSG00000042323.17, intron 1 of 25) protein_coding-intron (ENSMUSG00000042323.17, intron 1 of 27) 553 ENSMUSG00000042323.17 ENSMUSG00000042323 ENSMUST00000156407 Pbrm1 protein_coding Interval_13637 chr10 20328570 20328770 + 0 NA promoter-TSS (ENSMUSG00000037608.16) protein_coding-promoter-TSS (ENSMUSG00000037608.16) 16138 ENSMUSG00000037608.16 ENSMUSG00000037608 ENSMUST00000188546 Bclaf1 protein_coding Interval_62255 chr15 89195647 89196910 + 0 NA exon (ENSMUSG00000015377.10, exon 1 of 20) protein_coding-exon (ENSMUSG00000015377.10, exon 1 of 20) 187 ENSMUSG00000015377.10 ENSMUSG00000015377 ENSMUST00000230823 Dennd6b protein_coding Interval_63730 chr15 103108016 103108220 + 0 NA Intergenic Intergenic -3516 ENSMUSG00000101588.1 ENSMUSG00000101588 ENSMUST00000188201 Gm28265 lincRNA Interval_2725 chr1 43925422 43925671 + 0 NA Intergenic Intergenic -6660 ENSMUSG00000095757.1 ENSMUSG00000095757 ENSMUST00000179961 Gm24180 miRNA Interval_56783 chr14 122066884 122067082 + 0 NA exon (ENSMUSG00000115121.1, exon 4 of 5) lincRNA-exon (ENSMUSG00000115121.1, exon 4 of 5) 24243 ENSMUSG00000115121.1 ENSMUSG00000115121 ENSMUST00000226723 Gm49236 lincRNA Interval_127009 chr5 99479264 99479997 + 0 NA intron (ENSMUSG00000089809.9, intron 3 of 16) protein_coding-intron (ENSMUSG00000089809.9, intron 2 of 3) -28759 ENSMUSG00000104753.1 ENSMUSG00000104753 ENSMUST00000196037 Gm35172 lincRNA Interval_26922 chr11 61591133 61591302 + 0 NA Intergenic Intergenic -11530 ENSMUSG00000001036.17 ENSMUSG00000001036 ENSMUST00000137525 Epn2 protein_coding Interval_60477 chr15 74166629 74166819 + 0 NA Intergenic Intergenic -72391 ENSMUSG00000082585.3 ENSMUSG00000082585 ENSMUST00000120421 Gm15387 processed_pseudogene Interval_104591 chr3 68581642 68583629 + 0 NA intron (ENSMUSG00000027777.15, intron 1 of 6) protein_coding-intron (ENSMUSG00000027777.15, intron 2 of 7) -34927 ENSMUSG00000084617.1 ENSMUSG00000084617 ENSMUST00000122668 Gm22073 snRNA Interval_40865 chr12 108972845 108973080 + 0 NA intron (ENSMUSG00000040877.16, intron 1 of 2) protein_coding-intron (ENSMUSG00000040877.16, intron 3 of 7) 12050 ENSMUSG00000113966.1 ENSMUSG00000113966 ENSMUST00000222257 Gm47980 TEC Interval_78712 chr18 18645230 18645451 + 0 NA Intergenic Intergenic -401183 ENSMUSG00000117574.1 ENSMUSG00000117574 ENSMUST00000234831 Gm50084 lincRNA Interval_152011 chr7 128252231 128253885 + 0 NA intron (ENSMUSG00000030782.17, intron 7 of 7) protein_coding-intron (ENSMUSG00000030782.17, intron 9 of 9) 5040 ENSMUSG00000030782.17 ENSMUSG00000030782 ENSMUST00000170115 Tgfb1i1 protein_coding Interval_120018 chr4 141389568 141390204 + 0 NA intron (ENSMUSG00000033770.13, intron 13 of 18) protein_coding-intron (ENSMUSG00000033770.13, intron 14 of 19) 4941 ENSMUSG00000033770.13 ENSMUSG00000033770 ENSMUST00000133676 Clcnka protein_coding Interval_77539 chr17 91098555 91099370 + 0 NA Intergenic Intergenic -7248 ENSMUSG00000098740.1 ENSMUSG00000098740 ENSMUST00000183420 Gm27475 miRNA Interval_174538 chrX 157448379 157449463 + 0 NA intron (ENSMUSG00000071708.11, intron 8 of 9) protein_coding-intron (ENSMUSG00000071708.11, intron 9 of 10) 11940 ENSMUSG00000071708.11 ENSMUSG00000071708 ENSMUST00000123770 Sms protein_coding Interval_52618 chr14 48006537 48007495 + 0 NA Intergenic Intergenic 13075 ENSMUSG00000115425.1 ENSMUSG00000115425 ENSMUST00000227352 Gm49305 lincRNA Interval_104170 chr3 59531018 59531420 + 0 NA intron (ENSMUSG00000103598.1, intron 1 of 4) unprocessed_pseudogene-intron (ENSMUSG00000103598.1, intron 1 of 4) 4007 ENSMUSG00000103598.1 ENSMUSG00000103598 ENSMUST00000192696 Gm4856 unprocessed_pseudogene Interval_76525 chr17 80760406 80762467 + 0 NA Intergenic Intergenic 33305 ENSMUSG00000054957.5 ENSMUSG00000054957 ENSMUST00000068277 Gm9959 pseudogene Interval_60244 chr15 68986381 68986896 + 0 NA intron (ENSMUSG00000116092.1, intron 1 of 1) protein_coding-intron (ENSMUSG00000022332.8, intron 1 of 8) 27107 ENSMUSG00000116092.1 ENSMUSG00000116092 ENSMUST00000230699 Gm49422 sense_intronic Interval_69428 chr16 93314393 93314591 + 0 NA Intergenic Intergenic 50898 ENSMUSG00000100277.8 ENSMUSG00000100277 ENSMUST00000231338 1810053B23Rik processed_transcript Interval_13073 chr10 11149098 11150035 + 0 NA promoter-TSS (ENSMUSG00000090112.8) protein_coding-promoter-TSS (ENSMUSG00000090112.8) -55453 ENSMUSG00000090112.8 ENSMUSG00000090112 ENSMUST00000161910 Shprh protein_coding Interval_77644 chr17 93516865 93517128 + 0 NA Intergenic Intergenic -125298 ENSMUSG00000117368.1 ENSMUSG00000117368 ENSMUST00000234726 Gm50001 processed_pseudogene Interval_92381 chr2 59393004 59393538 + 0 NA Intergenic Intergenic -3217 ENSMUSG00000083276.1 ENSMUSG00000083276 ENSMUST00000121286 Gm13551 processed_pseudogene Interval_168781 chr9 86993171 86993760 + 0 NA intron (ENSMUSG00000111874.1, intron 3 of 3) lincRNA-intron (ENSMUSG00000111874.1, intron 3 of 3) 12698 ENSMUSG00000111874.1 ENSMUSG00000111874 ENSMUST00000217543 Gm36539 lincRNA Interval_155180 chr8 27233890 27236599 + 0 NA intron (ENSMUSG00000109674.1, intron 3 of 3) antisense-intron (ENSMUSG00000109674.1, intron 2 of 2) 2866 ENSMUSG00000109674.1 ENSMUSG00000109674 ENSMUST00000210817 Gm45470 antisense Interval_114921 chr4 86957691 86958599 + 0 NA Intergenic Intergenic 27454 ENSMUSG00000038007.14 ENSMUSG00000038007 ENSMUST00000135874 Acer2 protein_coding Interval_11860 chr1 186510521 186511025 + 0 NA Intergenic Intergenic 47908 ENSMUSG00000103690.1 ENSMUSG00000103690 ENSMUST00000195454 A730004F24Rik lincRNA Interval_39958 chr12 100113270 100114130 + 0 NA intron (ENSMUSG00000021178.9, intron 3 of 4) protein_coding-intron (ENSMUSG00000021178.9, intron 3 of 10) 3485 ENSMUSG00000021178.9 ENSMUSG00000021178 ENSMUST00000221308 Psmc1 protein_coding Interval_142764 chr6 145442851 145443251 + 0 NA exon (ENSMUSG00000086722.1, exon 2 of 3) antisense-exon (ENSMUSG00000086722.1, exon 2 of 3) 1295 ENSMUSG00000086722.1 ENSMUSG00000086722 ENSMUST00000141390 Gm15499 antisense Interval_48653 chr13 100860927 100862372 + 0 NA intron (ENSMUSG00000100596.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000100596.1, intron 1 of 2) -11131 ENSMUSG00000104450.1 ENSMUSG00000104450 ENSMUST00000195282 Gm37830 TEC Interval_124602 chr5 52235772 52238338 + 0 NA intron (ENSMUSG00000097145.5, intron 3 of 3) processed_transcript-intron (ENSMUSG00000097145.5, intron 5 of 5) -2281 ENSMUSG00000105328.1 ENSMUSG00000105328 ENSMUST00000197541 Gm43180 TEC Interval_116719 chr4 116824254 116825383 + 0 NA promoter-TSS (ENSMUSG00000086417.1) antisense-promoter-TSS (ENSMUSG00000086417.1) -85 ENSMUSG00000086417.1 ENSMUSG00000086417 ENSMUST00000151670 Gm12996 antisense Interval_152484 chr7 133381973 133382935 + 0 NA Intergenic Intergenic -49253 ENSMUSG00000109619.1 ENSMUSG00000109619 ENSMUST00000209700 Gm45672 lincRNA Interval_141193 chr6 125502044 125502605 + 0 NA intron (ENSMUSG00000101162.2, intron 1 of 2) processed_transcript-intron (ENSMUSG00000101162.2, intron 1 of 2) 7896 ENSMUSG00000101162.2 ENSMUSG00000101162 ENSMUST00000185268 Gm26728 processed_transcript Interval_151673 chr7 125951301 125951510 + 0 NA intron (ENSMUSG00000046182.8, intron 3 of 6) protein_coding-intron (ENSMUSG00000046182.8, intron 3 of 6) 113042 ENSMUSG00000108376.1 ENSMUSG00000108376 ENSMUST00000206586 Gm44874 TEC Interval_120450 chr4 148685956 148687124 + 0 NA Intergenic Intergenic -27163 ENSMUSG00000087273.1 ENSMUSG00000087273 ENSMUST00000139895 Gm13203 lincRNA Interval_56917 chr14 123299798 123300029 + 0 NA exon (ENSMUSG00000000197.8, exon 31 of 44) protein_coding-exon (ENSMUSG00000000197.8, exon 31 of 44) 89457 ENSMUSG00000115674.1 ENSMUSG00000115674 ENSMUST00000227636 Gm49297 TEC Interval_155306 chr8 31119336 31119700 + 0 NA TTS (ENSMUSG00000039328.11) protein_coding-TTS (ENSMUSG00000039328.11) 7688 ENSMUSG00000039328.11 ENSMUSG00000039328 ENSMUST00000209547 Rnf122 protein_coding Interval_117812 chr4 126361841 126363124 + 0 NA intron (ENSMUSG00000028842.15, intron 12 of 18) protein_coding-intron (ENSMUSG00000028842.15, intron 12 of 18) -36852 ENSMUSG00000028845.15 ENSMUSG00000028845 ENSMUST00000141990 Tekt2 protein_coding Interval_88583 chr2 6374199 6374744 + 0 NA intron (ENSMUSG00000039046.15, intron 1 of 13) protein_coding-intron (ENSMUSG00000039046.15, intron 1 of 13) -46451 ENSMUSG00000039046.15 ENSMUSG00000039046 ENSMUST00000150515 Usp6nl protein_coding Interval_101610 chr3 7689608 7689841 + 0 NA exon (ENSMUSG00000097804.1, exon 3 of 3) antisense-exon (ENSMUSG00000097804.1, exon 3 of 3) -75997 ENSMUSG00000040329.14 ENSMUSG00000040329 ENSMUST00000191681 Il7 protein_coding Interval_78095 chr18 7930429 7930675 + 0 NA Intergenic Intergenic -2230 ENSMUSG00000091019.1 ENSMUSG00000091019 ENSMUST00000169235 Gm7502 processed_pseudogene Interval_144377 chr7 24797694 24798736 + 0 NA Intergenic Intergenic -20580 ENSMUSG00000011350.15 ENSMUSG00000011350 ENSMUST00000155799 Gm5893 processed_transcript Interval_40290 chr12 103211801 103212138 + 0 NA intron (ENSMUSG00000041669.15, intron 2 of 4) protein_coding-intron (ENSMUSG00000041669.15, intron 3 of 4) 30159 ENSMUSG00000041669.15 ENSMUSG00000041669 ENSMUST00000155547 Prima1 protein_coding Interval_58660 chr15 36877565 36878368 + 0 NA intron (ENSMUSG00000072618.2, intron 1 of 1) lincRNA-intron (ENSMUSG00000072618.2, intron 1 of 1) 1850 ENSMUSG00000072618.2 ENSMUSG00000072618 ENSMUST00000100713 Gm10384 lincRNA Interval_130992 chr5 134444103 134447392 + 0 NA intron (ENSMUSG00000023079.14, intron 1 of 3) protein_coding-intron (ENSMUSG00000023079.14, intron 1 of 30) -2827 ENSMUSG00000076320.1 ENSMUSG00000076320 ENSMUST00000102365 Gm26340 miRNA Interval_174098 chrX 134717047 134719031 + 0 NA promoter-TSS (ENSMUSG00000033460.14) protein_coding-promoter-TSS (ENSMUSG00000033460.14) 36 ENSMUSG00000033460.14 ENSMUSG00000033460 ENSMUST00000137173 Armcx1 protein_coding Interval_34716 chr12 8893317 8893624 + 0 NA promoter-TSS (ENSMUSG00000042976.6) lincRNA-promoter-TSS (ENSMUSG00000042976.6) -16088 ENSMUSG00000042976.6 ENSMUSG00000042976 ENSMUST00000218928 9930038B18Rik lincRNA Interval_78768 chr18 20535934 20536214 + 0 NA intron (ENSMUSG00000056632.8, intron 12 of 18) protein_coding-intron (ENSMUSG00000056632.8, intron 12 of 15) 13290 ENSMUSG00000117627.1 ENSMUSG00000117627 ENSMUST00000234000 Tpi-rs10 processed_pseudogene Interval_144766 chr7 28104591 28105479 + 0 NA exon (ENSMUSG00000047730.17, exon 14 of 20) protein_coding-exon (ENSMUSG00000047730.17, exon 14 of 20) -8792 ENSMUSG00000047730.17 ENSMUSG00000047730 ENSMUST00000131090 Fcgbp protein_coding Interval_124795 chr5 54134873 54137046 + 0 NA Intergenic Intergenic 20102 ENSMUSG00000039156.19 ENSMUSG00000039156 ENSMUST00000202342 Stim2 protein_coding Interval_128501 chr5 113676469 113676923 + 0 NA Intergenic Intergenic -26300 ENSMUSG00000042190.12 ENSMUSG00000042190 ENSMUST00000151460 Cmklr1 protein_coding Interval_56880 chr14 122776457 122777645 + 0 NA intron (ENSMUSG00000041650.15, intron 2 of 3) protein_coding-intron (ENSMUSG00000041650.15, intron 19 of 23) 90735 ENSMUSG00000115264.1 ENSMUSG00000115264 ENSMUST00000226674 Gm49260 TEC Interval_79763 chr18 34988810 34989625 + 0 NA intron (ENSMUSG00000118380.1, intron 1 of 1) processed_transcript-intron (ENSMUSG00000118380.1, intron 1 of 5) 6247 ENSMUSG00000118380.1 ENSMUSG00000118380 ENSMUST00000238090 Gm36037 processed_transcript Interval_168007 chr9 75373216 75373513 + 0 NA promoter-TSS (ENSMUSG00000111545.1) processed_pseudogene-promoter-TSS (ENSMUSG00000111545.1) -265 ENSMUSG00000111545.1 ENSMUSG00000111545 ENSMUST00000214879 Gm18015 processed_pseudogene Interval_34274 chr11 121909985 121911230 + 0 NA Intergenic Intergenic -23639 ENSMUSG00000082947.1 ENSMUSG00000082947 ENSMUST00000120180 Gm12587 processed_pseudogene Interval_121551 chr5 3370479 3370706 + 0 NA intron (ENSMUSG00000040274.11, intron 1 of 1) protein_coding-intron (ENSMUSG00000040274.11, intron 1 of 6) 100273 ENSMUSG00000106658.1 ENSMUSG00000106658 ENSMUST00000197473 Gm36548 lincRNA Interval_161454 chr8 120535106 120539572 + 0 NA promoter-TSS (ENSMUSG00000031822.20) protein_coding-promoter-TSS (ENSMUSG00000031822.20) 387 ENSMUSG00000102737.1 ENSMUSG00000102737 ENSMUST00000192004 1700016A09Rik TEC Interval_74368 chr17 49563624 49564693 + 0 NA intron (ENSMUSG00000040260.8, intron 1 of 2) protein_coding-intron (ENSMUSG00000040260.8, intron 1 of 25) 148 ENSMUSG00000040260.8 ENSMUSG00000040260 ENSMUST00000226030 Daam2 protein_coding Interval_55734 chr14 99393723 99393959 + 0 NA Intergenic Intergenic 6402 ENSMUSG00000115590.1 ENSMUSG00000115590 ENSMUST00000226661 Gm49219 processed_pseudogene Interval_139703 chr6 107551393 107551721 + 0 NA intron (ENSMUSG00000034648.9, intron 1 of 1) protein_coding-intron (ENSMUSG00000034648.9, intron 1 of 1) 21789 ENSMUSG00000034648.9 ENSMUSG00000034648 ENSMUST00000049285 Lrrn1 protein_coding Interval_42649 chr13 17713063 17713304 + 0 NA exon (ENSMUSG00000041297.8, exon 14 of 14) protein_coding-exon (ENSMUSG00000041297.8, exon 14 of 14) -3319 ENSMUSG00000113045.1 ENSMUSG00000113045 ENSMUST00000220764 Gm48621 TEC Interval_86656 chr19 42335765 42336156 + 0 NA intron (ENSMUSG00000042401.8, intron 2 of 14) protein_coding-intron (ENSMUSG00000042401.8, intron 2 of 14) 43141 ENSMUSG00000117706.1 ENSMUSG00000117706 ENSMUST00000237236 Gm50184 processed_pseudogene Interval_79445 chr18 31922004 31922730 + 0 NA promoter-TSS (ENSMUSG00000024395.9) protein_coding-promoter-TSS (ENSMUSG00000024395.9) -10543 ENSMUSG00000044982.7 ENSMUSG00000044982 ENSMUST00000054984 Sft2d3 protein_coding Interval_75402 chr17 66369688 66370022 + 0 NA intron (ENSMUSG00000052105.17, intron 4 of 11) protein_coding-intron (ENSMUSG00000052105.17, intron 6 of 13) 44129 ENSMUSG00000093686.1 ENSMUSG00000093686 ENSMUST00000177415 Gm4705 processed_pseudogene Interval_161666 chr8 121897944 121898844 + 0 NA intron (ENSMUSG00000040010.10, intron 1 of 9) protein_coding-intron (ENSMUSG00000040010.10, intron 1 of 9) -1892 ENSMUSG00000040010.10 ENSMUSG00000040010 ENSMUST00000183015 Slc7a5 protein_coding Interval_104458 chr3 65943389 65945550 + 0 NA Intergenic Intergenic -10561 ENSMUSG00000102566.1 ENSMUSG00000102566 ENSMUST00000194475 Gm37037 processed_pseudogene Interval_123395 chr5 32183003 32184102 + 0 NA Intergenic Intergenic -1945 ENSMUSG00000107220.1 ENSMUSG00000107220 ENSMUST00000200908 Gm9555 processed_pseudogene Interval_107566 chr3 108514822 108515024 + 0 NA intron (ENSMUSG00000040412.17, intron 1 of 1) protein_coding-intron (ENSMUSG00000040412.17, intron 1 of 20) 16805 ENSMUSG00000080673.1 ENSMUSG00000080673 ENSMUST00000117023 Gm23336 snRNA Interval_62386 chr15 91498077 91498262 + 0 NA intron (ENSMUSG00000036298.10, intron 2 of 9) protein_coding-intron (ENSMUSG00000036298.10, intron 2 of 9) 34197 ENSMUSG00000084240.1 ENSMUSG00000084240 ENSMUST00000121889 Gm15383 processed_pseudogene Interval_76141 chr17 75520933 75522737 + 0 NA intron (ENSMUSG00000071042.12, intron 13 of 16) protein_coding-intron (ENSMUSG00000071042.12, intron 14 of 17) 30038 ENSMUSG00000002017.10 ENSMUSG00000002017 ENSMUST00000141969 Fam98a protein_coding Interval_88939 chr2 13258675 13259434 + 0 NA intron (ENSMUSG00000026727.10, intron 2 of 8) protein_coding-intron (ENSMUSG00000026727.10, intron 2 of 8) 12242 ENSMUSG00000026727.10 ENSMUSG00000026727 ENSMUST00000195538 Rsu1 protein_coding Interval_64128 chr16 8602255 8602733 + 0 NA exon (ENSMUSG00000057880.12, exon 8 of 8) protein_coding-exon (ENSMUSG00000057880.12, exon 8 of 8) 18867 ENSMUSG00000057880.12 ENSMUSG00000057880 ENSMUST00000128459 Abat protein_coding Interval_122393 chr5 21918527 21919503 + 0 NA exon (ENSMUSG00000042453.14, exon 52 of 64) protein_coding-exon (ENSMUSG00000042453.14, exon 52 of 64) 8084 ENSMUSG00000073152.4 ENSMUSG00000073152 ENSMUST00000084713 Gm10475 antisense Interval_147409 chr7 66541949 66542990 + 0 NA Intergenic Intergenic 23156 ENSMUSG00000109330.1 ENSMUSG00000109330 ENSMUST00000208155 Gm44754 processed_pseudogene Interval_21301 chr10 127733202 127734675 + 0 NA Intergenic Intergenic -5600 ENSMUSG00000044617.8 ENSMUSG00000044617 ENSMUST00000054287 Zbtb39 protein_coding Interval_74655 chr17 54443645 54443932 + 0 NA Intergenic Intergenic 24108 ENSMUSG00000090704.2 ENSMUSG00000090704 ENSMUST00000166597 Trp53-ps processed_pseudogene Interval_32730 chr11 110105337 110105555 + 0 NA intron (ENSMUSG00000041797.7, intron 37 of 38) protein_coding-intron (ENSMUSG00000041797.7, intron 37 of 38) -40073 ENSMUSG00000041828.15 ENSMUSG00000041828 ENSMUST00000106662 Abca8a protein_coding Interval_59146 chr15 44806859 44807558 + 0 NA intron (ENSMUSG00000060530.2, intron 2 of 2) transcribed_processed_pseudogene-intron (ENSMUSG00000060530.2, intron 2 of 2) -19145 ENSMUSG00000022340.15 ENSMUSG00000022340 ENSMUST00000228639 Sybu protein_coding Interval_110702 chr4 6590250 6591002 + 0 NA Intergenic Intergenic 43669 ENSMUSG00000077302.1 ENSMUSG00000077302 ENSMUST00000104114 Gm22473 snoRNA Interval_36568 chr12 50444842 50445985 + 0 NA intron (ENSMUSG00000002688.8, intron 2 of 18) protein_coding-intron (ENSMUSG00000002688.8, intron 2 of 18) 203685 ENSMUSG00000002688.8 ENSMUSG00000002688 ENSMUST00000002765 Prkd1 protein_coding Interval_60973 chr15 78409810 78410395 + 0 NA exon (ENSMUSG00000071711.12, exon 2 of 3) protein_coding-exon (ENSMUSG00000071711.12, exon 2 of 3) 3301 ENSMUSG00000071711.12 ENSMUSG00000071711 ENSMUST00000229739 Mpst protein_coding Interval_95513 chr2 110867380 110868390 + 0 NA intron (ENSMUSG00000074968.11, intron 3 of 17) protein_coding-intron (ENSMUSG00000074968.11, intron 3 of 26) -106321 ENSMUSG00000074968.11 ENSMUSG00000074968 ENSMUST00000140777 Ano3 protein_coding Interval_80549 chr18 43841817 43842372 + 0 NA intron (ENSMUSG00000117902.1, intron 1 of 3) lincRNA-intron (ENSMUSG00000117902.1, intron 1 of 3) 1998 ENSMUSG00000117902.1 ENSMUSG00000117902 ENSMUST00000237459 Gm41715 lincRNA Interval_54040 chr14 64676303 64676921 + 0 NA intron (ENSMUSG00000060012.9, intron 2 of 2) protein_coding-intron (ENSMUSG00000060012.9, intron 2 of 39) 24052 ENSMUSG00000060012.9 ENSMUSG00000060012 ENSMUST00000224677 Kif13b protein_coding Interval_120914 chr4 151580986 151581689 + 0 NA intron (ENSMUSG00000014592.21, intron 5 of 7) protein_coding-intron (ENSMUSG00000014592.21, intron 4 of 23) 204867 ENSMUSG00000085593.1 ENSMUSG00000085593 ENSMUST00000129097 4930589P08Rik antisense Interval_83886 chr19 5362108 5363003 + 0 NA Intergenic Intergenic -2035 ENSMUSG00000118610.1 ENSMUSG00000118610 ENSMUST00000239201 AC122861.1 unprocessed_pseudogene Interval_101407 chr2 181101566 181101804 + 0 NA promoter-TSS (ENSMUSG00000016346.17) protein_coding-promoter-TSS (ENSMUSG00000016346.17) 8071 ENSMUSG00000016346.17 ENSMUSG00000016346 ENSMUST00000140789 Kcnq2 protein_coding Interval_148264 chr7 80166690 80167388 + 0 NA Intergenic Intergenic 11870 ENSMUSG00000108757.1 ENSMUSG00000108757 ENSMUST00000205955 Gm45202 lincRNA Interval_57010 chr15 4032589 4033704 + 0 NA intron (ENSMUSG00000022186.14, intron 1 of 15) protein_coding-intron (ENSMUSG00000022186.14, intron 1 of 16) 6462 ENSMUSG00000022186.14 ENSMUSG00000022186 ENSMUST00000133130 Oxct1 protein_coding Interval_49674 chr13 113917243 113918305 + 0 NA intron (ENSMUSG00000042348.10, intron 2 of 5) protein_coding-intron (ENSMUSG00000042348.10, intron 1 of 4) 123181 ENSMUSG00000042348.10 ENSMUSG00000042348 ENSMUST00000224068 Arl15 protein_coding Interval_141352 chr6 127524167 127524714 + 0 NA Intergenic Intergenic -36898 ENSMUSG00000061414.8 ENSMUSG00000061414 ENSMUST00000071563 Cracr2a protein_coding Interval_54248 chr14 66867103 66867462 + 0 NA intron (ENSMUSG00000022048.8, intron 1 of 13) protein_coding-intron (ENSMUSG00000022048.8, intron 1 of 13) 1406 ENSMUSG00000022048.8 ENSMUSG00000022048 ENSMUST00000022629 Dpysl2 protein_coding Interval_66411 chr16 33714115 33715508 + 0 NA intron (ENSMUSG00000075254.12, intron 2 of 14) protein_coding-intron (ENSMUSG00000075254.12, intron 3 of 16) 30441 ENSMUSG00000075254.12 ENSMUSG00000075254 ENSMUST00000146518 Heg1 protein_coding Interval_149885 chr7 102238923 102239165 + 0 NA TTS (ENSMUSG00000073982.11) protein_coding-TTS (ENSMUSG00000073982.11) 3190 ENSMUSG00000111339.1 ENSMUSG00000111339 ENSMUST00000214560 AC139579.1 processed_transcript Interval_147240 chr7 64983036 64983247 + 0 NA intron (ENSMUSG00000030518.17, intron 2 of 9) protein_coding-intron (ENSMUSG00000030518.17, intron 2 of 9) -26565 ENSMUSG00000093212.1 ENSMUSG00000093212 ENSMUST00000175471 Gm25249 miRNA Interval_159651 chr8 96034744 96035028 + 0 NA Intergenic Intergenic 113357 ENSMUSG00000110506.1 ENSMUSG00000110506 ENSMUST00000212919 Gm8637 processed_pseudogene Interval_55043 chr14 77473809 77474083 + 0 NA intron (ENSMUSG00000022012.9, intron 4 of 6) protein_coding-intron (ENSMUSG00000022012.9, intron 5 of 18) 27494 ENSMUSG00000067973.11 ENSMUSG00000067973 ENSMUST00000163416 Gm6994 antisense Interval_95293 chr2 105771524 105771758 + 0 NA intron (ENSMUSG00000027167.11, intron 7 of 7) protein_coding-intron (ENSMUSG00000027167.11, intron 7 of 7) 42681 ENSMUSG00000027167.11 ENSMUSG00000027167 ENSMUST00000148441 Elp4 protein_coding Interval_101496 chr2 181959900 181960281 + 0 NA Intergenic Intergenic -31039 ENSMUSG00000098505.3 ENSMUSG00000098505 ENSMUST00000184507 Gm14496 protein_coding Interval_51389 chr14 27183002 27183235 + 0 NA intron (ENSMUSG00000021895.10, intron 3 of 13) protein_coding-intron (ENSMUSG00000021895.10, intron 3 of 13) -27279 ENSMUSG00000114349.1 ENSMUSG00000114349 ENSMUST00000225776 Gm7591 processed_pseudogene Interval_127966 chr5 109922674 109924110 + 0 NA promoter-TSS (ENSMUSG00000090015.8) protein_coding-promoter-TSS (ENSMUSG00000090015.8) -17034 ENSMUSG00000090015.8 ENSMUSG00000090015 ENSMUST00000170826 Gm15446 protein_coding Interval_24496 chr11 33725393 33726634 + 0 NA intron (ENSMUSG00000053519.17, intron 1 of 8) protein_coding-intron (ENSMUSG00000053519.17, intron 1 of 7) 20463 ENSMUSG00000087328.1 ENSMUSG00000087328 ENSMUST00000125068 Gm12120 antisense Interval_30311 chr11 93471511 93472475 + 0 NA intron (ENSMUSG00000056158.14, intron 4 of 9) protein_coding-intron (ENSMUSG00000056158.14, intron 4 of 9) -58669 ENSMUSG00000064743.1 ENSMUSG00000064743 ENSMUST00000082809 Gm24856 snRNA Interval_5189 chr1 86363820 86364075 + 0 NA intron (ENSMUSG00000073627.7, intron 1 of 1) processed_transcript-intron (ENSMUSG00000073627.7, intron 1 of 1) 4359 ENSMUSG00000073627.7 ENSMUSG00000073627 ENSMUST00000190804 C130036L24Rik processed_transcript Interval_34231 chr11 121470626 121471607 + 0 NA intron (ENSMUSG00000039230.14, intron 6 of 38) protein_coding-intron (ENSMUSG00000039230.14, intron 6 of 38) 36148 ENSMUSG00000025175.12 ENSMUSG00000025175 ENSMUST00000103014 Fn3k protein_coding Interval_76591 chr17 82146883 82147250 + 0 NA Intergenic Intergenic 45543 ENSMUSG00000117507.1 ENSMUSG00000117507 ENSMUST00000234943 Gm50045 processed_pseudogene Interval_80131 chr18 37765772 37766409 + 0 NA exon (ENSMUSG00000102428.1, exon 1 of 4) protein_coding-exon (ENSMUSG00000102428.1, exon 1 of 4) 317 ENSMUSG00000102428.1 ENSMUSG00000102428 ENSMUST00000193045 Pcdhga12 protein_coding Interval_85486 chr19 27395136 27395814 + 0 NA TTS (ENSMUSG00000041360.8) protein_coding-TTS (ENSMUSG00000041360.8) 24624 ENSMUSG00000041360.8 ENSMUSG00000041360 ENSMUST00000236702 Pum3 protein_coding Interval_40225 chr12 102634333 102635109 + 0 NA intron (ENSMUSG00000057963.9, intron 2 of 4) protein_coding-intron (ENSMUSG00000057963.9, intron 2 of 9) 6213 ENSMUSG00000057963.9 ENSMUSG00000057963 ENSMUST00000178697 Itpk1 protein_coding Interval_120938 chr4 151770231 151770538 + 0 NA intron (ENSMUSG00000014592.21, intron 2 of 7) protein_coding-intron (ENSMUSG00000014592.21, intron 3 of 23) 91320 ENSMUSG00000014592.21 ENSMUSG00000014592 ENSMUST00000135780 Camta1 protein_coding Interval_150783 chr7 114450694 114450958 + 0 NA intron (ENSMUSG00000030671.9, intron 1 of 15) protein_coding-intron (ENSMUSG00000030671.9, intron 1 of 15) -35665 ENSMUSG00000087475.3 ENSMUSG00000087475 ENSMUST00000124673 4933406I18Rik lincRNA Interval_48789 chr13 103304417 103304627 + 0 NA intron (ENSMUSG00000034751.17, intron 1 of 3) protein_coding-intron (ENSMUSG00000034751.17, intron 1 of 4) -51730 ENSMUSG00000047643.5 ENSMUSG00000047643 ENSMUST00000052030 Gm5454 processed_pseudogene Interval_151462 chr7 122768387 122769290 + 0 NA TTS (ENSMUSG00000066189.9) protein_coding-TTS (ENSMUSG00000066189.9) -66920 ENSMUSG00000108718.1 ENSMUSG00000108718 ENSMUST00000206285 Gm44749 TEC Interval_36164 chr12 37273918 37275101 + 0 NA intron (ENSMUSG00000050103.18, intron 3 of 12) protein_coding-intron (ENSMUSG00000050103.18, intron 3 of 12) 165969 ENSMUSG00000036144.6 ENSMUSG00000036144 ENSMUST00000041183 Meox2 protein_coding Interval_104563 chr3 68246116 68246707 + 0 NA intron (ENSMUSG00000027777.15, intron 1 of 6) protein_coding-intron (ENSMUSG00000027777.15, intron 1 of 7) -86785 ENSMUSG00000102846.1 ENSMUSG00000102846 ENSMUST00000193165 Gm10292 processed_pseudogene Interval_123453 chr5 32648821 32651338 + 0 NA intron (ENSMUSG00000014932.15, intron 3 of 11) protein_coding-intron (ENSMUSG00000014932.15, intron 3 of 11) 986 ENSMUSG00000085234.1 ENSMUSG00000085234 ENSMUST00000155976 Gm15614 antisense Interval_59258 chr15 50151493 50153122 + 0 NA Intergenic Intergenic -134591 ENSMUSG00000115478.1 ENSMUSG00000115478 ENSMUST00000227182 Gm49198 lincRNA Interval_167269 chr9 66919137 66920337 + 0 NA promoter-TSS (ENSMUSG00000036943.9) protein_coding-promoter-TSS (ENSMUSG00000036943.9) -50 ENSMUSG00000036943.9 ENSMUSG00000036943 ENSMUST00000041139 Rab8b protein_coding Interval_113911 chr4 59818295 59819526 + 0 NA intron (ENSMUSG00000028385.14, intron 1 of 8) protein_coding-intron (ENSMUSG00000028385.14, intron 1 of 8) -14767 ENSMUSG00000080772.1 ENSMUSG00000080772 ENSMUST00000120410 Gm12543 transcribed_processed_pseudogene Interval_141162 chr6 125349032 125350809 + 0 NA exon (ENSMUSG00000030341.17, exon 1 of 10) protein_coding-exon (ENSMUSG00000030341.17, exon 1 of 10) -7845 ENSMUSG00000030341.17 ENSMUSG00000030341 ENSMUST00000134803 Tnfrsf1a protein_coding Interval_144303 chr7 24389937 24390195 + 0 NA Intergenic Intergenic 7012 ENSMUSG00000054342.8 ENSMUSG00000054342 ENSMUST00000206910 Kcnn4 protein_coding Interval_68128 chr16 65498702 65499470 + 0 NA Intergenic Intergenic -24191 ENSMUSG00000004842.18 ENSMUSG00000004842 ENSMUST00000184525 Pou1f1 protein_coding Interval_28263 chr11 74767625 74768248 + 0 NA Intergenic Intergenic -35388 ENSMUSG00000010554.14 ENSMUSG00000010554 ENSMUST00000134571 Mettl16 protein_coding Interval_87480 chr19 52839644 52839901 + 0 NA Intergenic Intergenic -83470 ENSMUSG00000117896.1 ENSMUSG00000117896 ENSMUST00000237126 AA387883 lincRNA Interval_111181 chr4 14410588 14411201 + 0 NA Intergenic Intergenic -22997 ENSMUSG00000081239.3 ENSMUSG00000081239 ENSMUST00000121022 Gm11836 processed_pseudogene Interval_87059 chr19 45851861 45852134 + 0 NA intron (ENSMUSG00000039901.10, intron 23 of 25) protein_coding-intron (ENSMUSG00000039901.10, intron 23 of 25) 8380 ENSMUSG00000117956.1 ENSMUSG00000117956 ENSMUST00000235344 Gm50196 antisense Interval_167880 chr9 73337910 73339177 + 0 NA Intergenic Intergenic 146060 ENSMUSG00000098875.1 ENSMUSG00000098875 ENSMUST00000183507 Gm27211 lincRNA Interval_65350 chr16 21769923 21770255 + 0 NA intron (ENSMUSG00000022853.7, intron 5 of 6) protein_coding-intron (ENSMUSG00000022853.7, intron 5 of 6) -4024 ENSMUSG00000088758.1 ENSMUSG00000088758 ENSMUST00000158133 Gm24898 snRNA Interval_112732 chr4 44479545 44480065 + 0 NA Intergenic Intergenic -67210 ENSMUSG00000077587.1 ENSMUSG00000077587 ENSMUST00000104399 Gm24376 snoRNA Interval_37419 chr12 68057596 68057942 + 0 NA intron (ENSMUSG00000113526.1, intron 2 of 2) lincRNA-intron (ENSMUSG00000113526.1, intron 2 of 2) 9268 ENSMUSG00000113526.1 ENSMUSG00000113526 ENSMUST00000220843 Gm47453 lincRNA Interval_26322 chr11 56151797 56152130 + 0 NA Intergenic Intergenic -110953 ENSMUSG00000037393.2 ENSMUSG00000037393 ENSMUST00000037682 Nmur2 protein_coding Interval_154759 chr8 23165927 23166389 + 0 NA Intergenic Intergenic 12889 ENSMUSG00000063672.7 ENSMUSG00000063672 ENSMUST00000071588 Nkx6-3 protein_coding Interval_143958 chr7 18544611 18544865 + 0 NA Intergenic Intergenic -4347 ENSMUSG00000065313.1 ENSMUSG00000065313 ENSMUST00000083379 Gm26062 snRNA Interval_28963 chr11 79599585 79600570 + 0 NA intron (ENSMUSG00000017639.13, intron 1 of 14) protein_coding-intron (ENSMUSG00000017639.13, intron 1 of 14) 4912 ENSMUSG00000064486.1 ENSMUSG00000064486 ENSMUST00000082552 Gm23293 snRNA Interval_5362 chr1 87887135 87887405 + 0 NA intron (ENSMUSG00000070738.10, intron 2 of 3) protein_coding-intron (ENSMUSG00000070738.10, intron 3 of 29) -10270 ENSMUSG00000103591.1 ENSMUSG00000103591 ENSMUST00000195720 Gm38365 TEC Interval_39464 chr12 88038956 88039765 + 0 NA Intergenic Intergenic -1322 ENSMUSG00000113401.1 ENSMUSG00000113401 ENSMUST00000222937 Gm18247 processed_pseudogene Interval_118180 chr4 129387487 129388816 + 0 NA Intergenic Intergenic 8307 ENSMUSG00000082468.1 ENSMUSG00000082468 ENSMUST00000118912 Gm12980 processed_pseudogene Interval_108065 chr3 121306831 121308061 + 0 NA intron (ENSMUSG00000039887.11, intron 2 of 2) protein_coding-intron (ENSMUSG00000039887.11, intron 2 of 3) 15619 ENSMUSG00000039887.11 ENSMUSG00000039887 ENSMUST00000198341 Alg14 protein_coding Interval_6572 chr1 117290437 117291420 + 0 NA Intergenic Intergenic 102604 ENSMUSG00000101154.1 ENSMUSG00000101154 ENSMUST00000189740 Gm17777 processed_pseudogene Interval_164470 chr9 37270273 37270657 + 0 NA exon (ENSMUSG00000111681.1, exon 1 of 1) TEC-exon (ENSMUSG00000111681.1, exon 1 of 1) 1178 ENSMUSG00000111681.1 ENSMUSG00000111681 ENSMUST00000216704 Gm47640 TEC Interval_139526 chr6 100787236 100787439 + 0 NA intron (ENSMUSG00000030074.9, intron 5 of 6) protein_coding-intron (ENSMUSG00000030074.9, intron 5 of 6) -4492 ENSMUSG00000107989.1 ENSMUSG00000107989 ENSMUST00000203856 Gm19692 TEC Interval_32879 chr11 112745043 112745509 + 0 NA promoter-TSS (ENSMUSG00000041674.16) processed_transcript-promoter-TSS (ENSMUSG00000041674.16) -33936 ENSMUSG00000041674.16 ENSMUSG00000041674 ENSMUST00000148724 BC006965 processed_transcript Interval_156468 chr8 48474087 48474575 + 0 NA intron (ENSMUSG00000031561.16, intron 2 of 26) protein_coding-intron (ENSMUSG00000031561.16, intron 2 of 28) 80982 ENSMUSG00000031561.16 ENSMUSG00000031561 ENSMUST00000211812 Tenm3 protein_coding Interval_169062 chr9 91378395 91379344 + 0 NA TTS (ENSMUSG00000036972.14) protein_coding-TTS (ENSMUSG00000036972.14) 2533 ENSMUSG00000102803.1 ENSMUSG00000102803 ENSMUST00000195215 Gm37477 TEC Interval_136243 chr6 52245066 52246735 + 0 NA promoter-TSS (ENSMUSG00000038210.10) protein_coding-promoter-TSS (ENSMUSG00000038210.10) -105 ENSMUSG00000038210.10 ENSMUSG00000038210 ENSMUST00000131495 Hoxa11 protein_coding Interval_89059 chr2 15144058 15145644 + 0 NA Intergenic Intergenic 17251 ENSMUSG00000083860.2 ENSMUSG00000083860 ENSMUST00000118938 Gm13313 processed_pseudogene Interval_96820 chr2 128583124 128583920 + 0 NA Intergenic Intergenic 4646 ENSMUSG00000082350.1 ENSMUSG00000082350 ENSMUST00000120483 Gm14008 processed_pseudogene Interval_154522 chr8 18918186 18919046 + 0 NA Intergenic Intergenic -12083 ENSMUSG00000110651.1 ENSMUSG00000110651 ENSMUST00000212105 Gm45770 processed_pseudogene Interval_141746 chr6 134183803 134184333 + 0 NA intron (ENSMUSG00000030199.16, intron 2 of 4) protein_coding-intron (ENSMUSG00000030199.16, intron 2 of 7) -12061 ENSMUSG00000091438.1 ENSMUSG00000091438 ENSMUST00000164616 Gm17088 antisense Interval_66944 chr16 38673374 38674171 + 0 NA intron (ENSMUSG00000022799.4, intron 1 of 1) protein_coding-intron (ENSMUSG00000022799.4, intron 1 of 11) 12097 ENSMUSG00000081651.1 ENSMUSG00000081651 ENSMUST00000122206 Gm15530 processed_pseudogene Interval_12281 chr1 191385251 191386002 + 0 NA promoter-TSS (ENSMUSG00000026626.11) protein_coding-promoter-TSS (ENSMUSG00000026626.11) 13673 ENSMUSG00000026626.11 ENSMUSG00000026626 ENSMUST00000194832 Ppp2r5a protein_coding Interval_5259 chr1 87035121 87035407 + 0 NA intron (ENSMUSG00000053333.15, intron 15 of 20) protein_coding-intron (ENSMUSG00000053333.15, intron 14 of 20) -1459 ENSMUSG00000103984.1 ENSMUSG00000103984 ENSMUST00000195625 Gm37447 TEC Interval_65267 chr16 21139904 21140615 + 0 NA Intergenic Intergenic 13741 ENSMUSG00000090356.2 ENSMUSG00000090356 ENSMUST00000170665 Teddm3 protein_coding Interval_95353 chr2 106856048 106857211 + 0 NA intron (ENSMUSG00000016386.15, intron 4 of 6) protein_coding-intron (ENSMUSG00000016386.15, intron 4 of 6) 47293 ENSMUSG00000105450.1 ENSMUSG00000105450 ENSMUST00000199948 Gm22813 scaRNA Interval_85959 chr19 34222807 34223304 + 0 NA intron (ENSMUSG00000024776.18, intron 2 of 10) protein_coding-intron (ENSMUSG00000024776.18, intron 2 of 10) 30826 ENSMUSG00000024776.18 ENSMUSG00000024776 ENSMUST00000130756 Stambpl1 protein_coding Interval_74226 chr17 47571322 47572518 + 0 NA intron (ENSMUSG00000034165.16, intron 1 of 6) protein_coding-intron (ENSMUSG00000034165.16, intron 1 of 6) -24404 ENSMUSG00000034165.16 ENSMUSG00000034165 ENSMUST00000183206 Ccnd3 protein_coding Interval_71003 chr17 17109118 17109801 + 0 NA Intergenic Intergenic -11956 ENSMUSG00000095990.1 ENSMUSG00000095990 ENSMUST00000147630 Zfp97 protein_coding Interval_9703 chr1 161153405 161154131 + 0 NA TTS (ENSMUSG00000049160.15) protein_coding-TTS (ENSMUSG00000049160.15) 5546 ENSMUSG00000049160.15 ENSMUSG00000049160 ENSMUST00000178511 Tex50 protein_coding Interval_159960 chr8 105431624 105433988 + 0 NA intron (ENSMUSG00000054320.16, intron 5 of 13) protein_coding-intron (ENSMUSG00000054320.16, intron 2 of 10) 19178 ENSMUSG00000054320.16 ENSMUSG00000054320 ENSMUST00000216457 Lrrc36 protein_coding Interval_49751 chr13 114477103 114477336 + 0 NA Intergenic Intergenic 18556 ENSMUSG00000114935.1 ENSMUSG00000114935 ENSMUST00000225706 Gm47040 antisense Interval_81578 chr18 61786009 61786969 + 0 NA intron (ENSMUSG00000033032.15, intron 1 of 15) protein_coding-intron (ENSMUSG00000033032.15, intron 1 of 18) 122 ENSMUSG00000033032.15 ENSMUSG00000033032 ENSMUST00000147278 Afap1l1 protein_coding Interval_142787 chr6 145700984 145701371 + 0 NA Intergenic Intergenic 45096 ENSMUSG00000085658.1 ENSMUSG00000085658 ENSMUST00000144757 Gm15704 lincRNA Interval_151058 chr7 118232738 118233690 + 0 NA intron (ENSMUSG00000030655.15, intron 1 of 9) protein_coding-intron (ENSMUSG00000030655.15, intron 1 of 62) -1857 ENSMUSG00000109045.1 ENSMUSG00000109045 ENSMUST00000207096 Gm45084 TEC Interval_159300 chr8 92998583 92998818 + 0 NA exon (ENSMUSG00000055368.14, exon 14 of 14) protein_coding-exon (ENSMUSG00000055368.14, exon 14 of 14) -12919 ENSMUSG00000109651.1 ENSMUSG00000109651 ENSMUST00000209831 Gm45463 processed_transcript Interval_44447 chr13 44878540 44878798 + 0 NA intron (ENSMUSG00000038518.15, intron 4 of 15) protein_coding-intron (ENSMUSG00000038518.15, intron 5 of 18) -40386 ENSMUSG00000088189.1 ENSMUSG00000088189 ENSMUST00000157564 Gm22213 snoRNA Interval_48741 chr13 102669822 102671004 + 0 NA Intergenic Intergenic -23198 ENSMUSG00000021624.9 ENSMUSG00000021624 ENSMUST00000172138 Cd180 protein_coding Interval_152160 chr7 130273062 130273806 + 0 NA intron (ENSMUSG00000030849.18, intron 2 of 6) protein_coding-intron (ENSMUSG00000030849.18, intron 2 of 6) -7179 ENSMUSG00000030849.18 ENSMUSG00000030849 ENSMUST00000208844 Fgfr2 protein_coding Interval_138633 chr6 90575110 90576017 + 0 NA intron (ENSMUSG00000030088.15, intron 12 of 22) protein_coding-intron (ENSMUSG00000030088.15, intron 12 of 22) 24385 ENSMUSG00000089781.2 ENSMUSG00000089781 ENSMUST00000161447 Gm15756 antisense Interval_89558 chr2 22755425 22755684 + 0 NA promoter-TSS (ENSMUSG00000085353.2) lincRNA-promoter-TSS (ENSMUSG00000085353.2) -6418 ENSMUSG00000085353.2 ENSMUSG00000085353 ENSMUST00000169209 1700092C17Rik lincRNA Interval_143318 chr7 5258300 5258497 + 0 NA Intergenic Intergenic -4686 ENSMUSG00000109211.1 ENSMUSG00000109211 ENSMUST00000207108 Gm45146 processed_pseudogene Interval_126525 chr5 89578167 89578436 + 0 NA intron (ENSMUSG00000035528.4, intron 3 of 3) protein_coding-intron (ENSMUSG00000035528.4, intron 3 of 3) 50872 ENSMUSG00000035528.4 ENSMUSG00000035528 ENSMUST00000048557 Npffr2 protein_coding Interval_130222 chr5 125039777 125040158 + 0 NA intron (ENSMUSG00000029478.16, intron 7 of 17) protein_coding-intron (ENSMUSG00000029478.16, intron 22 of 45) -14906 ENSMUSG00000029478.16 ENSMUSG00000029478 ENSMUST00000199561 Ncor2 protein_coding Interval_962 chr1 13494090 13495717 + 0 NA Intergenic Intergenic -87248 ENSMUSG00000101171.1 ENSMUSG00000101171 ENSMUST00000187246 Gm7593 processed_pseudogene Interval_57306 chr15 8638513 8638991 + 0 NA intron (ENSMUSG00000005360.14, intron 5 of 5) protein_coding-intron (ENSMUSG00000005360.14, intron 9 of 9) 16321 ENSMUSG00000103047.1 ENSMUSG00000103047 ENSMUST00000195237 Gm37310 TEC Interval_22754 chr11 14769776 14770136 + 0 NA Intergenic Intergenic -10071 ENSMUSG00000082156.1 ENSMUSG00000082156 ENSMUST00000117791 Gm12008 processed_pseudogene Interval_50633 chr14 16907565 16907803 + 0 NA Intergenic Intergenic -38975 ENSMUSG00000114890.1 ENSMUSG00000114890 ENSMUST00000223705 Tpi-rs9 processed_pseudogene Interval_100221 chr2 167755447 167755758 + 0 NA Intergenic Intergenic -21865 ENSMUSG00000084797.1 ENSMUSG00000084797 ENSMUST00000127441 Gm14321 lincRNA Interval_42068 chr13 7427280 7428349 + 0 NA Intergenic Intergenic -18695 ENSMUSG00000113225.1 ENSMUSG00000113225 ENSMUST00000221383 Gm36074 lincRNA Interval_47687 chr13 91246621 91246912 + 0 NA Intergenic Intergenic -12610 ENSMUSG00000114688.1 ENSMUSG00000114688 ENSMUST00000225131 Gm47381 lincRNA Interval_88777 chr2 10577336 10578348 + 0 NA exon (ENSMUSG00000061186.15, exon 20 of 23) protein_coding-exon (ENSMUSG00000061186.15, exon 20 of 23) 59687 ENSMUSG00000080594.1 ENSMUSG00000080594 ENSMUST00000116944 Mir669h miRNA Interval_83787 chr19 4720769 4721781 + 0 NA exon (ENSMUSG00000067889.6, exon 1 of 2) protein_coding-exon (ENSMUSG00000067889.6, exon 1 of 2) 196 ENSMUSG00000067889.6 ENSMUSG00000067889 ENSMUST00000238162 Sptbn2 protein_coding Interval_103300 chr3 38283793 38284359 + 0 NA Intergenic Intergenic -15992 ENSMUSG00000092986.2 ENSMUSG00000092986 ENSMUST00000175245 Gm25574 misc_RNA Interval_161387 chr8 120163231 120164650 + 0 NA promoter-TSS (ENSMUSG00000031824.15) protein_coding-promoter-TSS (ENSMUSG00000031824.15) 13423 ENSMUSG00000042269.15 ENSMUSG00000042269 ENSMUST00000142478 Fam92b protein_coding Interval_110796 chr4 8473784 8473964 + 0 NA Intergenic Intergenic -17376 ENSMUSG00000082151.3 ENSMUSG00000082151 ENSMUST00000118311 Gm11810 processed_pseudogene Interval_67680 chr16 55924781 55925742 + 0 NA intron (ENSMUSG00000022604.18, intron 3 of 3) protein_coding-intron (ENSMUSG00000022604.18, intron 3 of 10) 9536 ENSMUSG00000022604.18 ENSMUSG00000022604 ENSMUST00000121703 Cep97 protein_coding Interval_174159 chrX 136929475 136930315 + 0 NA exon (ENSMUSG00000081295.1, exon 1 of 1) processed_pseudogene-exon (ENSMUSG00000081295.1, exon 1 of 1) 109 ENSMUSG00000081295.1 ENSMUSG00000081295 ENSMUST00000118971 Gm6275 processed_pseudogene Interval_78771 chr18 20551178 20551417 + 0 NA Intergenic Intergenic -1933 ENSMUSG00000117627.1 ENSMUSG00000117627 ENSMUST00000234000 Tpi-rs10 processed_pseudogene Interval_109562 chr3 144470449 144471746 + 0 NA intron (ENSMUSG00000040151.9, intron 1 of 6) protein_coding-intron (ENSMUSG00000040151.9, intron 1 of 6) 26075 ENSMUSG00000104903.1 ENSMUSG00000104903 ENSMUST00000196451 Gm43707 sense_intronic Interval_140786 chr6 121345046 121345267 + 0 NA intron (ENSMUSG00000030109.15, intron 1 of 1) protein_coding-intron (ENSMUSG00000030109.15, intron 1 of 14) -11664 ENSMUSG00000030109.15 ENSMUSG00000030109 ENSMUST00000170339 Slc6a12 protein_coding Interval_86885 chr19 44639579 44640477 + 0 NA intron (ENSMUSG00000117911.1, intron 6 of 7) lincRNA-intron (ENSMUSG00000117911.1, intron 5 of 6) 25266 ENSMUSG00000117911.1 ENSMUSG00000117911 ENSMUST00000236677 Gm35460 lincRNA Interval_102552 chr3 27698127 27698835 + 0 NA intron (ENSMUSG00000039286.12, intron 1 of 26) protein_coding-intron (ENSMUSG00000039286.12, intron 1 of 25) 11917 ENSMUSG00000039286.12 ENSMUSG00000039286 ENSMUST00000193779 Fndc3b protein_coding Interval_57656 chr15 13434659 13434967 + 0 NA Intergenic Intergenic -15957 ENSMUSG00000115347.1 ENSMUSG00000115347 ENSMUST00000227992 Gm8238 processed_pseudogene Interval_3490 chr1 58889914 58890453 + 0 NA intron (ENSMUSG00000099719.1, intron 3 of 11) unprocessed_pseudogene-intron (ENSMUSG00000099719.1, intron 3 of 11) 2609 ENSMUSG00000099719.1 ENSMUSG00000099719 ENSMUST00000188624 Gm28802 unprocessed_pseudogene Interval_16886 chr10 69497182 69498101 + 0 NA intron (ENSMUSG00000069601.14, intron 2 of 42) protein_coding-intron (ENSMUSG00000069601.14, intron 2 of 2) 68720 ENSMUSG00000112729.1 ENSMUSG00000112729 ENSMUST00000220152 Gm46231 processed_pseudogene Interval_41485 chr12 114983366 114983868 + 0 NA Intergenic Intergenic -5491 ENSMUSG00000102928.1 ENSMUSG00000102928 ENSMUST00000193988 Ighv1-46 IG_V_pseudogene Interval_10063 chr1 165526098 165527887 + 0 NA intron (ENSMUSG00000026567.16, intron 8 of 11) protein_coding-intron (ENSMUSG00000026567.16, intron 13 of 33) 17081 ENSMUSG00000026567.16 ENSMUSG00000026567 ENSMUST00000124037 Adcy10 protein_coding Interval_54452 chr14 69835300 69835722 + 0 NA Intergenic Intergenic -4909 ENSMUSG00000022085.4 ENSMUSG00000022085 ENSMUST00000022678 Pebp4 protein_coding Interval_71930 chr17 27069090 27070135 + 0 NA intron (ENSMUSG00000042644.9, intron 1 of 57) protein_coding-intron (ENSMUSG00000042644.9, intron 1 of 57) -18198 ENSMUSG00000117799.1 ENSMUSG00000117799 ENSMUST00000236359 Gm50295 lincRNA Interval_157941 chr8 76898891 76900977 + 0 NA promoter-TSS (ENSMUSG00000074235.4) bidirectional_promoter_lncRNA-promoter-TSS (ENSMUSG00000074235.4) 687 ENSMUSG00000074235.4 ENSMUSG00000074235 ENSMUST00000148066 Gm10649 bidirectional_promoter_lncRNA Interval_122843 chr5 26014576 26014937 + 0 NA Intergenic Intergenic 7729 ENSMUSG00000090671.1 ENSMUSG00000090671 ENSMUST00000170449 Gm5067 processed_pseudogene Interval_45550 chr13 55775094 55775347 + 0 NA TTS (ENSMUSG00000069223.10) antisense-TTS (ENSMUSG00000069223.10) 9274 ENSMUSG00000069223.10 ENSMUSG00000069223 ENSMUST00000152292 4930451E10Rik antisense Interval_142251 chr6 139972722 139974139 + 0 NA Intergenic Intergenic 60102 ENSMUSG00000108251.1 ENSMUSG00000108251 ENSMUST00000204787 Gm44112 processed_pseudogene Interval_149483 chr7 99014960 99016115 + 0 NA intron (ENSMUSG00000035354.9, intron 1 of 10) protein_coding-intron (ENSMUSG00000035354.9, intron 7 of 14) 1107 ENSMUSG00000035354.9 ENSMUSG00000035354 ENSMUST00000208502 Uvrag protein_coding Interval_58656 chr15 36857633 36857994 + 0 NA Intergenic Intergenic 14997 ENSMUSG00000115750.1 ENSMUSG00000115750 ENSMUST00000226620 Gm49282 lincRNA Interval_172204 chrX 9142352 9143104 + 0 NA Intergenic Intergenic 19261 ENSMUSG00000087021.3 ENSMUSG00000087021 ENSMUST00000126259 Fthl17-ps3 unprocessed_pseudogene Interval_26400 chr11 57644226 57645990 + 0 NA promoter-TSS (ENSMUSG00000020520.14) protein_coding-promoter-TSS (ENSMUSG00000020520.14) -357 ENSMUSG00000020520.14 ENSMUSG00000020520 ENSMUST00000108846 Galnt10 protein_coding Interval_106757 chr3 100495404 100495618 + 0 NA intron (ENSMUSG00000053957.5, intron 1 of 2) lincRNA-intron (ENSMUSG00000053957.5, intron 1 of 2) -1918 ENSMUSG00000104943.1 ENSMUSG00000104943 ENSMUST00000199168 Gm42868 sense_intronic Interval_100340 chr2 168497650 168497878 + 0 NA intron (ENSMUSG00000027544.16, intron 7 of 8) protein_coding-intron (ENSMUSG00000027544.16, intron 9 of 9) -79190 ENSMUSG00000082239.1 ENSMUSG00000082239 ENSMUST00000119539 Gm14234 processed_pseudogene Interval_13522 chr10 19090988 19091156 + 0 NA Intergenic Intergenic -3894 ENSMUSG00000110938.1 ENSMUSG00000110938 ENSMUST00000217047 1700124M09Rik lincRNA Interval_101051 chr2 174631972 174632263 + 0 NA Intergenic Intergenic -11417 ENSMUSG00000050600.5 ENSMUSG00000050600 ENSMUST00000059452 Zfp831 protein_coding Interval_125816 chr5 74574274 74574473 + 0 NA intron (ENSMUSG00000029227.15, intron 11 of 15) protein_coding-intron (ENSMUSG00000029227.15, intron 11 of 16) -1574 ENSMUSG00000107165.1 ENSMUSG00000107165 ENSMUST00000201412 Gm43747 TEC Interval_12739 chr10 4611960 4612401 + 0 NA intron (ENSMUSG00000019768.16, intron 1 of 8) protein_coding-intron (ENSMUSG00000019768.16, intron 1 of 8) 587 ENSMUSG00000019768.16 ENSMUSG00000019768 ENSMUST00000137012 Esr1 protein_coding Interval_123700 chr5 34592725 34593734 + 0 NA intron (ENSMUSG00000029106.14, intron 1 of 17) protein_coding-intron (ENSMUSG00000029106.14, intron 1 of 15) 18141 ENSMUSG00000107128.1 ENSMUSG00000107128 ENSMUST00000202995 Gm42867 TEC Interval_23688 chr11 24608154 24608822 + 0 NA intron (ENSMUSG00000087085.1, intron 2 of 3) lincRNA-intron (ENSMUSG00000087085.1, intron 2 of 3) -54430 ENSMUSG00000088502.1 ENSMUSG00000088502 ENSMUST00000157877 Gm22787 snRNA Interval_125971 chr5 76348670 76349415 + 0 NA intron (ENSMUSG00000029236.4, intron 3 of 9) protein_coding-intron (ENSMUSG00000029236.4, intron 3 of 9) 14746 ENSMUSG00000029236.4 ENSMUSG00000029236 ENSMUST00000031146 Nmu protein_coding Interval_14580 chr10 36506154 36508120 + 0 NA promoter-TSS (ENSMUSG00000044499.11) protein_coding-promoter-TSS (ENSMUSG00000044499.11) 248 ENSMUSG00000044499.11 ENSMUSG00000044499 ENSMUST00000171521 Hs3st5 protein_coding Interval_172181 chrX 8238450 8239841 + 0 NA exon (ENSMUSG00000031171.11, exon 13 of 13) protein_coding-exon (ENSMUSG00000031171.11, exon 13 of 13) 7211 ENSMUSG00000031171.11 ENSMUSG00000031171 ENSMUST00000147467 Ftsj1 protein_coding Interval_174061 chrX 133931360 133931864 + 0 NA exon (ENSMUSG00000031253.15, exon 12 of 12) protein_coding-exon (ENSMUSG00000031253.15, exon 12 of 12) 23164 ENSMUSG00000031253.15 ENSMUSG00000031253 ENSMUST00000113304 Srpx2 protein_coding Interval_87863 chr19 56663409 56664926 + 0 NA intron (ENSMUSG00000117890.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000117890.1, intron 1 of 2) 444 ENSMUSG00000117890.1 ENSMUSG00000117890 ENSMUST00000237615 Gm32441 lincRNA Interval_85813 chr19 32114659 32114873 + 0 NA Intergenic Intergenic 94507 ENSMUSG00000118064.1 ENSMUSG00000118064 ENSMUST00000235377 Gm50210 sense_intronic Interval_23146 chr11 20173416 20173898 + 0 NA Intergenic Intergenic 21078 ENSMUSG00000084442.1 ENSMUSG00000084442 ENSMUST00000122493 Gm26253 snRNA Interval_46066 chr13 60728495 60729494 + 0 NA intron (ENSMUSG00000021559.14, intron 15 of 26) protein_coding-intron (ENSMUSG00000021559.14, intron 15 of 26) -42681 ENSMUSG00000096874.2 ENSMUSG00000096874 ENSMUST00000078515 Gm10312 processed_pseudogene Interval_51328 chr14 26480706 26481288 + 0 NA intron (ENSMUSG00000021870.17, intron 2 of 22) protein_coding-intron (ENSMUSG00000021870.17, intron 2 of 22) -16658 ENSMUSG00000065864.1 ENSMUSG00000065864 ENSMUST00000083930 Gm24031 snoRNA Interval_35583 chr12 25054297 25055655 + 0 NA TTS (ENSMUSG00000036333.11) protein_coding-TTS (ENSMUSG00000036333.11) -9716 ENSMUSG00000114148.1 ENSMUSG00000114148 ENSMUST00000220747 Gm47701 lincRNA Interval_159920 chr8 105208150 105209551 + 0 NA intron (ENSMUSG00000031885.14, intron 5 of 5) protein_coding-intron (ENSMUSG00000031885.14, intron 5 of 5) 4857 ENSMUSG00000084711.1 ENSMUSG00000084711 ENSMUST00000122762 Gm24629 misc_RNA Interval_74039 chr17 46215066 46215286 + 0 NA intron (ENSMUSG00000067150.6, intron 7 of 31) protein_coding-intron (ENSMUSG00000067150.6, intron 7 of 31) 12359 ENSMUSG00000067150.6 ENSMUSG00000067150 ENSMUST00000232971 Xpo5 protein_coding Interval_42939 chr13 21591929 21592120 + 0 NA Intergenic Intergenic -10265 ENSMUSG00000046016.3 ENSMUSG00000046016 ENSMUST00000057453 Olfr1364 protein_coding Interval_105607 chr3 88071733 88072593 + 0 NA promoter-TSS (ENSMUSG00000051036.13) protein_coding-promoter-TSS (ENSMUSG00000051036.13) 3354 ENSMUSG00000051036.13 ENSMUSG00000051036 ENSMUST00000238508 Ttc24 protein_coding Interval_110386 chr3 157612238 157612680 + 0 NA intron (ENSMUSG00000040016.16, intron 2 of 2) protein_coding-intron (ENSMUSG00000040016.16, intron 2 of 2) 45559 ENSMUSG00000040016.16 ENSMUSG00000040016 ENSMUST00000173533 Ptger3 protein_coding Interval_36122 chr12 36072794 36073865 + 0 NA Intergenic Intergenic -17050 ENSMUSG00000059301.7 ENSMUSG00000059301 ENSMUST00000071825 Gm5434 transcribed_processed_pseudogene Interval_122287 chr5 20950824 20952295 + 0 NA exon (ENSMUSG00000039968.9, exon 1 of 8) protein_coding-exon (ENSMUSG00000039968.9, exon 1 of 8) 570 ENSMUSG00000101013.1 ENSMUSG00000101013 ENSMUST00000190567 A630072M18Rik antisense Interval_3932 chr1 64918674 64919609 + 0 NA intron (ENSMUSG00000051344.13, intron 2 of 4) protein_coding-intron (ENSMUSG00000051344.13, intron 3 of 7) -15261 ENSMUSG00000097264.1 ENSMUSG00000097264 ENSMUST00000181350 Rpl31-ps24 processed_pseudogene Interval_163130 chr9 15514535 15514776 + 0 NA intron (ENSMUSG00000058173.12, intron 1 of 2) protein_coding-intron (ENSMUSG00000058173.12, intron 1 of 2) 21223 ENSMUSG00000058173.12 ENSMUSG00000058173 ENSMUST00000178999 Smco4 protein_coding Interval_110581 chr4 4194173 4195066 + 0 NA Intergenic Intergenic -55800 ENSMUSG00000045573.9 ENSMUSG00000045573 ENSMUST00000133567 Penk protein_coding Interval_81731 chr18 64019267 64019626 + 0 NA Intergenic Intergenic 61974 ENSMUSG00000117673.1 ENSMUSG00000117673 ENSMUST00000237015 Gm6974 processed_pseudogene Interval_137928 chr6 83427214 83428889 + 0 NA intron (ENSMUSG00000034832.15, intron 2 of 2) protein_coding-intron (ENSMUSG00000034832.15, intron 2 of 3) -7059 ENSMUSG00000108780.1 ENSMUSG00000108780 ENSMUST00000206080 5430434F05Rik TEC Interval_7253 chr1 128243578 128245102 + 0 NA exon (ENSMUSG00000026353.9, exon 1 of 13) protein_coding-exon (ENSMUSG00000026353.9, exon 1 of 13) 376 ENSMUSG00000026353.9 ENSMUSG00000026353 ENSMUST00000189895 Ubxn4 protein_coding Interval_101935 chr3 12366742 12367163 + 0 NA Intergenic Intergenic 17657 ENSMUSG00000103339.1 ENSMUSG00000103339 ENSMUST00000191859 Gm37996 processed_pseudogene Interval_48539 chr13 99954810 99955425 + 0 NA intron (ENSMUSG00000021646.9, intron 1 of 4) protein_coding-intron (ENSMUSG00000021646.9, intron 13 of 16) 20199 ENSMUSG00000021646.9 ENSMUSG00000021646 ENSMUST00000221846 Mccc2 protein_coding Interval_56622 chr14 120898704 120900973 + 0 NA Intergenic Intergenic -16009 ENSMUSG00000030662.10 ENSMUSG00000030662 ENSMUST00000228277 Ipo5 protein_coding Interval_65308 chr16 21412425 21413233 + 0 NA Intergenic Intergenic -79700 ENSMUSG00000116632.1 ENSMUSG00000116632 ENSMUST00000231972 Magef1 transcribed_processed_pseudogene Interval_170572 chr9 108783098 108784391 + 0 NA promoter-TSS (ENSMUSG00000032599.12) protein_coding-promoter-TSS (ENSMUSG00000032599.12) -121 ENSMUSG00000032599.12 ENSMUSG00000032599 ENSMUST00000193970 Ip6k2 protein_coding Interval_119452 chr4 137706990 137707989 + 0 NA promoter-TSS (ENSMUSG00000041351.16) protein_coding-promoter-TSS (ENSMUSG00000041351.16) -883 ENSMUSG00000087476.1 ENSMUSG00000087476 ENSMUST00000135358 Rap1gapos antisense Interval_21686 chr11 3697602 3698540 + 0 NA exon (ENSMUSG00000083015.1, exon 1 of 2) processed_pseudogene-exon (ENSMUSG00000083015.1, exon 1 of 2) 255 ENSMUSG00000083015.1 ENSMUSG00000083015 ENSMUST00000117960 Gm16518 processed_pseudogene Interval_129634 chr5 121443475 121444543 + 0 NA TTS (ENSMUSG00000029616.9) protein_coding-TTS (ENSMUSG00000029616.9) 4006 ENSMUSG00000042719.17 ENSMUSG00000042719 ENSMUST00000174322 Naa25 protein_coding Interval_82246 chr18 69573814 69574263 + 0 NA intron (ENSMUSG00000053477.17, intron 7 of 8) protein_coding-intron (ENSMUSG00000053477.17, intron 9 of 20) 22075 ENSMUSG00000088659.1 ENSMUSG00000088659 ENSMUST00000158034 Gm24845 rRNA Interval_86783 chr19 43874149 43875102 + 0 NA intron (ENSMUSG00000025195.9, intron 2 of 13) protein_coding-intron (ENSMUSG00000025195.9, intron 4 of 14) 5143 ENSMUSG00000025195.9 ENSMUSG00000025195 ENSMUST00000212157 Dnmbp protein_coding Interval_158329 chr8 81373010 81373198 + 0 NA intron (ENSMUSG00000037940.17, intron 1 of 24) protein_coding-intron (ENSMUSG00000037940.17, intron 1 of 23) 30542 ENSMUSG00000037940.17 ENSMUSG00000037940 ENSMUST00000165821 Inpp4b protein_coding Interval_42262 chr13 11273860 11274374 + 0 NA Intergenic Intergenic 152781 ENSMUSG00000077618.1 ENSMUSG00000077618 ENSMUST00000104430 Gm25496 snoRNA Interval_108606 chr3 129536224 129536847 + 0 NA intron (ENSMUSG00000041220.10, intron 1 of 3) protein_coding-intron (ENSMUSG00000041220.10, intron 2 of 4) -1606 ENSMUSG00000106092.1 ENSMUSG00000106092 ENSMUST00000200283 Gm43072 TEC Interval_163076 chr9 15037800 15038209 + 0 NA intron (ENSMUSG00000031934.14, intron 1 of 4) protein_coding-intron (ENSMUSG00000031934.14, intron 1 of 3) 5793 ENSMUSG00000031934.14 ENSMUSG00000031934 ENSMUST00000169288 Panx1 protein_coding Interval_20103 chr10 114725415 114725832 + 0 NA intron (ENSMUSG00000050663.8, intron 2 of 18) protein_coding-intron (ENSMUSG00000050663.8, intron 2 of 18) -32124 ENSMUSG00000089934.1 ENSMUSG00000089934 ENSMUST00000161975 4930473D10Rik antisense Interval_128850 chr5 115581367 115582443 + 0 NA promoter-TSS (ENSMUSG00000041638.18) protein_coding-promoter-TSS (ENSMUSG00000041638.18) 956 ENSMUSG00000099047.1 ENSMUSG00000099047 ENSMUST00000184777 Mir7029 miRNA Interval_54509 chr14 70340997 70342319 + 0 NA intron (ENSMUSG00000022094.15, intron 1 of 3) protein_coding-intron (ENSMUSG00000022094.15, intron 1 of 9) -18529 ENSMUSG00000058745.4 ENSMUSG00000058745 ENSMUST00000078149 Gm9174 processed_pseudogene Interval_15308 chr10 44400216 44400836 + 0 NA Intergenic Intergenic 23798 ENSMUSG00000111078.1 ENSMUSG00000111078 ENSMUST00000215400 Gm35028 lincRNA Interval_144972 chr7 29187108 29187984 + 0 NA intron (ENSMUSG00000049676.14, intron 22 of 22) protein_coding-intron (ENSMUSG00000049676.14, intron 21 of 27) 4510 ENSMUSG00000061115.4 ENSMUSG00000061115 ENSMUST00000170118 Gm17113 processed_pseudogene Interval_112109 chr4 34749871 34750660 + 0 NA intron (ENSMUSG00000071015.2, intron 3 of 4) protein_coding-intron (ENSMUSG00000071015.2, intron 3 of 4) 5998 ENSMUSG00000071015.2 ENSMUSG00000071015 ENSMUST00000095129 Gm136 protein_coding Interval_132607 chr5 146707943 146709510 + 0 NA Intergenic Intergenic 2104 ENSMUSG00000106020.1 ENSMUSG00000106020 ENSMUST00000197707 4930573C15Rik lincRNA Interval_5985 chr1 93726246 93727603 + 0 NA intron (ENSMUSG00000026279.14, intron 2 of 5) protein_coding-intron (ENSMUSG00000026279.14, intron 2 of 5) -4180 ENSMUSG00000101952.1 ENSMUSG00000101952 ENSMUST00000188846 Gm10550 antisense Interval_84645 chr19 14634745 14635866 + 0 NA Intergenic Intergenic -23362 ENSMUSG00000103488.1 ENSMUSG00000103488 ENSMUST00000193515 Gm37997 TEC Interval_1781 chr1 33748800 33749444 + 0 NA promoter-TSS (ENSMUSG00000042215.8) protein_coding-promoter-TSS (ENSMUSG00000042215.8) 1115 ENSMUSG00000103072.1 ENSMUSG00000103072 ENSMUST00000195310 Gm37905 TEC Interval_140179 chr6 115029131 115030579 + 0 NA intron (ENSMUSG00000030316.13, intron 3 of 4) protein_coding-intron (ENSMUSG00000030316.13, intron 3 of 7) 8000 ENSMUSG00000030316.13 ENSMUSG00000030316 ENSMUST00000144445 Tamm41 protein_coding Interval_111821 chr4 31422909 31423227 + 0 NA Intergenic Intergenic 42596 ENSMUSG00000082254.1 ENSMUSG00000082254 ENSMUST00000118967 Gm11922 processed_pseudogene Interval_47987 chr13 94874852 94875796 + 0 NA promoter-TSS (ENSMUSG00000021685.11) protein_coding-promoter-TSS (ENSMUSG00000021685.11) -7276 ENSMUSG00000021685.11 ENSMUSG00000021685 ENSMUST00000184985 Otp protein_coding Interval_29160 chr11 80833786 80834278 + 0 NA Intergenic Intergenic -10839 ENSMUSG00000081663.1 ENSMUSG00000081663 ENSMUST00000117824 Gm11207 processed_pseudogene Interval_8439 chr1 139394259 139394625 + 0 NA intron (ENSMUSG00000103844.1, intron 4 of 8) lincRNA-intron (ENSMUSG00000103844.1, intron 4 of 8) -13836 ENSMUSG00000102661.1 ENSMUSG00000102661 ENSMUST00000193363 Gm34816 lincRNA Interval_26412 chr11 57707245 57707791 + 0 NA intron (ENSMUSG00000020520.14, intron 1 of 2) protein_coding-intron (ENSMUSG00000020520.14, intron 1 of 11) -33782 ENSMUSG00000077155.1 ENSMUSG00000077155 ENSMUST00000103967 Gm24582 snRNA Interval_73611 chr17 41184434 41185311 + 0 NA Intergenic Intergenic 83834 ENSMUSG00000117062.1 ENSMUSG00000117062 ENSMUST00000232966 Ldha-ps3 processed_pseudogene Interval_45478 chr13 55350200 55351288 + 0 NA TTS (ENSMUSG00000021484.8) protein_coding-TTS (ENSMUSG00000021484.8) 11867 ENSMUSG00000021484.8 ENSMUSG00000021484 ENSMUST00000225366 Lman2 protein_coding Interval_146187 chr7 44589216 44591680 + 0 NA promoter-TSS (ENSMUSG00000062785.14) protein_coding-promoter-TSS (ENSMUSG00000062785.14) 176 ENSMUSG00000109491.1 ENSMUSG00000109491 ENSMUST00000209101 Gm15396 antisense Interval_105017 chr3 79813874 79814587 + 0 NA intron (ENSMUSG00000027956.11, intron 11 of 11) protein_coding-intron (ENSMUSG00000027956.11, intron 11 of 11) -20703 ENSMUSG00000077461.1 ENSMUSG00000077461 ENSMUST00000104273 Gm26420 snRNA Interval_174348 chrX 146962345 146963282 + 0 NA promoter-TSS (ENSMUSG00000041380.13) protein_coding-promoter-TSS (ENSMUSG00000041380.13) 299 ENSMUSG00000041380.13 ENSMUSG00000041380 ENSMUST00000112831 Htr2c protein_coding Interval_121309 chr4 154898521 154899541 + 0 NA promoter-TSS (ENSMUSG00000029059.9) protein_coding-promoter-TSS (ENSMUSG00000029059.9) 104 ENSMUSG00000029059.9 ENSMUSG00000029059 ENSMUST00000132281 Prxl2b protein_coding Interval_74761 chr17 56370648 56371336 + 0 NA intron (ENSMUSG00000024201.12, intron 6 of 21) protein_coding-intron (ENSMUSG00000024201.12, intron 6 of 22) -22525 ENSMUSG00000024201.12 ENSMUSG00000024201 ENSMUST00000141507 Kdm4b protein_coding Interval_52527 chr14 47328442 47328691 + 0 NA Intergenic Intergenic -7510 ENSMUSG00000115728.1 ENSMUSG00000115728 ENSMUST00000227470 Gm49190 processed_pseudogene Interval_106496 chr3 96703292 96703762 + 0 NA promoter-TSS (ENSMUSG00000028101.18) protein_coding-promoter-TSS (ENSMUSG00000028101.18) 5020 ENSMUSG00000028100.11 ENSMUSG00000028100 ENSMUST00000029742 Nudt17 protein_coding Interval_73305 chr17 36096491 36097411 + 0 NA promoter-TSS (ENSMUSG00000092224.2) unprocessed_pseudogene-promoter-TSS (ENSMUSG00000092224.2) -146 ENSMUSG00000092224.2 ENSMUSG00000092224 ENSMUST00000173809 Gm8815 unprocessed_pseudogene Interval_136931 chr6 64683256 64685504 + 0 NA intron (ENSMUSG00000071424.10, intron 1 of 1) protein_coding-intron (ENSMUSG00000071424.10, intron 1 of 1) 21192 ENSMUSG00000071424.10 ENSMUSG00000071424 ENSMUST00000210324 Grid2 protein_coding Interval_84554 chr19 12730850 12732718 + 0 NA Intergenic Intergenic -10581 ENSMUSG00000084981.7 ENSMUSG00000084981 ENSMUST00000124184 Gm15962 antisense Interval_113514 chr4 55456246 55456633 + 0 NA intron (ENSMUSG00000086346.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000086346.1, intron 1 of 1) 9375 ENSMUSG00000086346.1 ENSMUSG00000086346 ENSMUST00000152190 Gm12510 lincRNA Interval_112841 chr4 45457396 45458250 + 0 NA TTS (ENSMUSG00000044813.15) protein_coding-TTS (ENSMUSG00000044813.15) 24979 ENSMUSG00000044813.15 ENSMUSG00000044813 ENSMUST00000147448 Shb protein_coding Interval_55765 chr14 99786208 99787033 + 0 NA intron (ENSMUSG00000103188.1, intron 1 of 1) TEC-intron (ENSMUSG00000103188.1, intron 1 of 1) 6153 ENSMUSG00000103188.1 ENSMUSG00000103188 ENSMUST00000192515 Gm37093 TEC Interval_45209 chr13 53201831 53202050 + 0 NA intron (ENSMUSG00000021464.14, intron 1 of 8) protein_coding-intron (ENSMUSG00000021464.14, intron 1 of 8) 73718 ENSMUSG00000021464.14 ENSMUSG00000021464 ENSMUST00000149299 Ror2 protein_coding Interval_4608 chr1 75427191 75427781 + 0 NA intron (ENSMUSG00000026207.16, intron 4 of 4) protein_coding-intron (ENSMUSG00000026207.16, intron 34 of 40) -9456 ENSMUSG00000033021.16 ENSMUSG00000033021 ENSMUST00000124539 Gmppa protein_coding Interval_161266 chr8 119394409 119395609 + 0 NA exon (ENSMUSG00000074064.6, exon 1 of 5) protein_coding-exon (ENSMUSG00000074064.6, exon 1 of 5) 111 ENSMUSG00000074064.6 ENSMUSG00000074064 ENSMUST00000145121 Mlycd protein_coding Interval_112976 chr4 46568367 46568850 + 0 NA intron (ENSMUSG00000028337.14, intron 1 of 7) protein_coding-intron (ENSMUSG00000028337.14, intron 1 of 11) -32486 ENSMUSG00000039853.18 ENSMUSG00000039853 ENSMUST00000142606 Trim14 protein_coding Interval_40525 chr12 105504651 105505006 + 0 NA Intergenic Intergenic -8652 ENSMUSG00000113535.1 ENSMUSG00000113535 ENSMUST00000223443 AU015791 lincRNA Interval_105881 chr3 89892515 89893124 + 0 NA intron (ENSMUSG00000027947.11, intron 1 of 9) protein_coding-intron (ENSMUSG00000027947.11, intron 1 of 9) -20097 ENSMUSG00000105941.1 ENSMUSG00000105941 ENSMUST00000198429 Gm42809 antisense Interval_62491 chr15 93448459 93448809 + 0 NA intron (ENSMUSG00000036167.16, intron 4 of 7) protein_coding-intron (ENSMUSG00000036167.16, intron 5 of 9) 49426 ENSMUSG00000036167.16 ENSMUSG00000036167 ENSMUST00000229721 Pphln1 protein_coding Interval_79180 chr18 25478455 25479400 + 0 NA TTS (ENSMUSG00000024268.16) protein_coding-TTS (ENSMUSG00000024268.16) 22312 ENSMUSG00000024268.16 ENSMUSG00000024268 ENSMUST00000224143 Celf4 protein_coding Interval_11728 chr1 184917970 184919517 + 0 NA TTS (ENSMUSG00000026620.11) protein_coding-TTS (ENSMUSG00000026620.11) -4393 ENSMUSG00000102784.1 ENSMUSG00000102784 ENSMUST00000192968 Gm38251 antisense Interval_154672 chr8 22491416 22491775 + 0 NA intron (ENSMUSG00000037656.9, intron 1 of 1) protein_coding-intron (ENSMUSG00000037656.9, intron 1 of 10) 11304 ENSMUSG00000097042.2 ENSMUSG00000097042 ENSMUST00000180411 Gm17491 sense_intronic Interval_79176 chr18 25450448 25451067 + 0 NA intron (ENSMUSG00000033632.16, intron 11 of 11) protein_coding-intron (ENSMUSG00000033632.16, intron 9 of 9) 50482 ENSMUSG00000024268.16 ENSMUSG00000024268 ENSMUST00000224143 Celf4 protein_coding Interval_10223 chr1 167292515 167292809 + 0 NA Intergenic Intergenic 2537 ENSMUSG00000098379.1 ENSMUSG00000098379 ENSMUST00000184939 Mir6347 miRNA Interval_28917 chr11 79266981 79267864 + 0 NA intron (ENSMUSG00000108822.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000108822.1, intron 1 of 1) 6471 ENSMUSG00000108822.1 ENSMUSG00000108822 ENSMUST00000208268 Gm44787 lincRNA Interval_24555 chr11 34411022 34412411 + 0 NA intron (ENSMUSG00000069911.11, intron 3 of 3) protein_coding-intron (ENSMUSG00000069911.11, intron 4 of 4) 96958 ENSMUSG00000069911.11 ENSMUSG00000069911 ENSMUST00000093192 Insyn2b protein_coding Interval_56839 chr14 122367301 122367632 + 0 NA intron (ENSMUSG00000115263.1, intron 4 of 4) protein_coding-intron (ENSMUSG00000025545.10, intron 2 of 7) 20694 ENSMUSG00000095311.1 ENSMUSG00000095311 ENSMUST00000175481 Gm25464 snRNA Interval_131022 chr5 134608953 134611228 + 0 NA intron (ENSMUSG00000040751.12, intron 1 of 6) protein_coding-intron (ENSMUSG00000040751.12, intron 1 of 12) -6170 ENSMUSG00000040751.12 ENSMUSG00000040751 ENSMUST00000201832 Lat2 protein_coding Interval_89813 chr2 25615637 25616834 + 0 NA exon (ENSMUSG00000026940.3, exon 4 of 14) protein_coding-exon (ENSMUSG00000026940.3, exon 4 of 14) 1424 ENSMUSG00000026940.3 ENSMUSG00000026940 ENSMUST00000129520 Ccdc183 protein_coding Interval_112404 chr4 41067431 41068125 + 0 NA Intergenic Intergenic 17558 ENSMUSG00000088154.1 ENSMUSG00000088154 ENSMUST00000157529 Gm25637 snRNA Interval_103799 chr3 53051898 53052174 + 0 NA intron (ENSMUSG00000048332.13, intron 2 of 3) protein_coding-intron (ENSMUSG00000048332.13, intron 2 of 3) -10281 ENSMUSG00000104850.1 ENSMUSG00000104850 ENSMUST00000197735 Gm42901 antisense Interval_26583 chr11 59045418 59045696 + 0 NA intron (ENSMUSG00000061462.18, intron 2 of 3) protein_coding-intron (ENSMUSG00000061462.18, intron 59 of 89) 42647 ENSMUSG00000072902.4 ENSMUSG00000072902 ENSMUST00000101162 Gm10435 antisense Interval_90940 chr2 33615897 33617051 + 0 NA intron (ENSMUSG00000038765.14, intron 2 of 7) protein_coding-intron (ENSMUSG00000038765.14, intron 2 of 7) 2076 ENSMUSG00000104403.1 ENSMUSG00000104403 ENSMUST00000193312 Gm38011 TEC Interval_67099 chr16 42919831 42920695 + 0 NA intron (ENSMUSG00000022708.16, intron 2 of 7) protein_coding-intron (ENSMUSG00000022708.16, intron 1 of 14) -8198 ENSMUSG00000116903.1 ENSMUSG00000116903 ENSMUST00000231971 Gm19522 antisense Interval_49881 chr13 117579031 117579497 + 0 NA Intergenic Intergenic -23056 ENSMUSG00000021730.8 ENSMUSG00000021730 ENSMUST00000006991 Hcn1 protein_coding Interval_105863 chr3 89808475 89809190 + 0 NA Intergenic Intergenic -12166 ENSMUSG00000106564.1 ENSMUSG00000106564 ENSMUST00000199694 Gm8969 processed_pseudogene Interval_136587 chr6 56162198 56162461 + 0 NA intron (ENSMUSG00000004347.17, intron 9 of 19) protein_coding-intron (ENSMUSG00000004347.17, intron 7 of 18) 10702 ENSMUSG00000106152.1 ENSMUSG00000106152 ENSMUST00000198921 Gm44413 miRNA Interval_42284 chr13 11761286 11762204 + 0 NA intron (ENSMUSG00000021313.16, intron 27 of 104) protein_coding-intron (ENSMUSG00000021313.16, intron 27 of 104) 59989 ENSMUSG00000113269.1 ENSMUSG00000113269 ENSMUST00000221204 Gm47494 TEC Interval_29232 chr11 81831824 81833122 + 0 NA intron (ENSMUSG00000020704.13, intron 1 of 9) protein_coding-intron (ENSMUSG00000020704.13, intron 1 of 9) -28200 ENSMUSG00000020703.3 ENSMUSG00000020703 ENSMUST00000021044 5530401A14Rik protein_coding Interval_101560 chr3 6086893 6088239 + 0 NA Intergenic Intergenic 50678 ENSMUSG00000103848.1 ENSMUSG00000103848 ENSMUST00000192818 Gm17934 processed_pseudogene Interval_51363 chr14 27022820 27023285 + 0 NA Intergenic Intergenic 28636 ENSMUSG00000040726.10 ENSMUSG00000040726 ENSMUST00000035433 Hesx1 protein_coding Interval_152616 chr7 135379992 135380176 + 0 NA Intergenic Intergenic -16251 ENSMUSG00000073803.3 ENSMUSG00000073803 ENSMUST00000097982 4930544L04Rik TEC Interval_55167 chr14 78869970 78870285 + 0 NA intron (ENSMUSG00000058997.8, intron 2 of 12) protein_coding-intron (ENSMUSG00000058997.8, intron 2 of 44) -38857 ENSMUSG00000115290.1 ENSMUSG00000115290 ENSMUST00000226127 Gm19098 processed_pseudogene Interval_145111 chr7 30094241 30095311 + 0 NA promoter-TSS (ENSMUSG00000049421.13) protein_coding-promoter-TSS (ENSMUSG00000049421.13) -3381 ENSMUSG00000049421.13 ENSMUSG00000049421 ENSMUST00000182136 Zfp260 protein_coding Interval_2140 chr1 36690966 36692142 + 0 NA promoter-TSS (ENSMUSG00000061518.11) protein_coding-promoter-TSS (ENSMUSG00000061518.11) -56 ENSMUSG00000061518.11 ENSMUSG00000061518 ENSMUST00000193235 Cox5b protein_coding Interval_171875 chr9 121936676 121937593 + 0 NA promoter-TSS (ENSMUSG00000043773.5) lincRNA-promoter-TSS (ENSMUSG00000043773.5) -839 ENSMUSG00000111053.1 ENSMUSG00000111053 ENSMUST00000214808 Gm49343 processed_transcript Interval_34334 chr12 3440921 3441611 + 0 NA intron (ENSMUSG00000037486.18, intron 1 of 11) protein_coding-intron (ENSMUSG00000037486.18, intron 1 of 10) 2751 ENSMUSG00000118499.1 ENSMUSG00000118499 ENSMUST00000239031 AC160138.1 processed_pseudogene Interval_66480 chr16 34125358 34126020 + 0 NA intron (ENSMUSG00000061751.16, intron 32 of 48) protein_coding-intron (ENSMUSG00000061751.16, intron 33 of 59) -29661 ENSMUSG00000061751.16 ENSMUSG00000061751 ENSMUST00000132569 Kalrn protein_coding Interval_39210 chr12 85859304 85859882 + 0 NA intron (ENSMUSG00000012609.19, intron 6 of 31) protein_coding-intron (ENSMUSG00000012609.19, intron 7 of 33) -37343 ENSMUSG00000021252.11 ENSMUSG00000021252 ENSMUST00000142331 Erg28 protein_coding Interval_120218 chr4 144380237 144382295 + 0 NA Intergenic Intergenic -3333 ENSMUSG00000073721.5 ENSMUSG00000073721 ENSMUST00000121109 Pramef20 protein_coding Interval_159711 chr8 98658257 98658666 + 0 NA Intergenic Intergenic 16741 ENSMUSG00000080480.1 ENSMUSG00000080480 ENSMUST00000116830 Gm23494 snRNA Interval_3798 chr1 63131679 63132112 + 0 NA intron (ENSMUSG00000084799.7, intron 1 of 3) lincRNA-intron (ENSMUSG00000084799.7, intron 1 of 3) 13066 ENSMUSG00000025968.16 ENSMUSG00000025968 ENSMUST00000189664 Ndufs1 protein_coding Interval_3553 chr1 59533982 59534288 + 0 NA TTS (ENSMUSG00000101409.1) antisense-TTS (ENSMUSG00000101409.1) 3094 ENSMUSG00000101409.1 ENSMUSG00000101409 ENSMUST00000186973 1700122D07Rik antisense Interval_145644 chr7 36677797 36679124 + 0 NA Intergenic Intergenic -16978 ENSMUSG00000104330.1 ENSMUSG00000104330 ENSMUST00000192928 Gm38285 TEC Interval_19979 chr10 111641551 111641860 + 0 NA Intergenic Intergenic 8107 ENSMUSG00000112357.1 ENSMUSG00000112357 ENSMUST00000217989 Gm47864 processed_pseudogene Interval_96301 chr2 121395962 121397418 + 0 NA intron (ENSMUSG00000033486.14, intron 7 of 8) protein_coding-intron (ENSMUSG00000033486.14, intron 12 of 12) 4701 ENSMUSG00000082651.1 ENSMUSG00000082651 ENSMUST00000118847 Gm14001 processed_pseudogene Interval_26478 chr11 58076323 58076757 + 0 NA intron (ENSMUSG00000086962.4, intron 2 of 8) protein_coding-intron (ENSMUSG00000086962.4, intron 2 of 8) 16594 ENSMUSG00000086962.4 ENSMUSG00000086962 ENSMUST00000137124 Gm12248 protein_coding Interval_160137 chr8 106657982 106658198 + 0 NA intron (ENSMUSG00000000303.12, intron 7 of 16) protein_coding-intron (ENSMUSG00000000303.12, intron 7 of 15) -25025 ENSMUSG00000041949.6 ENSMUSG00000041949 ENSMUST00000211979 Tango6 protein_coding Interval_77337 chr17 88055489 88057830 + 0 NA intron (ENSMUSG00000005371.15, intron 1 of 22) protein_coding-intron (ENSMUSG00000005371.15, intron 1 of 22) 8584 ENSMUSG00000005371.15 ENSMUSG00000005371 ENSMUST00000235056 Fbxo11 protein_coding Interval_37289 chr12 64846961 64847206 + 0 NA Intergenic Intergenic 30268 ENSMUSG00000114029.1 ENSMUSG00000114029 ENSMUST00000222704 Gm4806 processed_pseudogene Interval_173294 chrX 77432641 77434012 + 0 NA Intergenic Intergenic -23260 ENSMUSG00000081622.1 ENSMUSG00000081622 ENSMUST00000119715 Gm5937 processed_pseudogene Interval_28562 chr11 76739050 76739573 + 0 NA intron (ENSMUSG00000010392.8, intron 6 of 8) protein_coding-intron (ENSMUSG00000010392.8, intron 6 of 8) 24256 ENSMUSG00000010392.8 ENSMUSG00000010392 ENSMUST00000137767 Gosr1 protein_coding Interval_6325 chr1 105902823 105903858 + 0 NA Intergenic Intergenic -12328 ENSMUSG00000102690.1 ENSMUSG00000102690 ENSMUST00000194221 Gm37779 TEC Interval_68918 chr16 88710699 88711896 + 0 NA Intergenic Intergenic -3335 ENSMUSG00000050704.3 ENSMUSG00000050704 ENSMUST00000050882 2310061N02Rik protein_coding Interval_64843 chr16 16398356 16399237 + 0 NA Intergenic Intergenic 16137 ENSMUSG00000118629.1 ENSMUSG00000118629 ENSMUST00000239385 CT573014.1 processed_pseudogene Interval_170730 chr9 110379993 110381470 + 0 NA intron (ENSMUSG00000032485.14, intron 15 of 22) protein_coding-intron (ENSMUSG00000032485.14, intron 15 of 22) -5301 ENSMUSG00000091102.1 ENSMUSG00000091102 ENSMUST00000168137 5830462I19Rik TEC Interval_125604 chr5 72526104 72526478 + 0 NA intron (ENSMUSG00000072889.9, intron 14 of 21) protein_coding-intron (ENSMUSG00000072889.9, intron 15 of 22) -21852 ENSMUSG00000005220.10 ENSMUSG00000005220 ENSMUST00000176439 Corin protein_coding Interval_89687 chr2 24606461 24607663 + 0 NA TTS (ENSMUSG00000004113.18) protein_coding-TTS (ENSMUSG00000004113.18) 5697 ENSMUSG00000088571.1 ENSMUSG00000088571 ENSMUST00000157946 Gm25455 misc_RNA Interval_163855 chr9 27157813 27158347 + 0 NA Intergenic Intergenic -31530 ENSMUSG00000031990.15 ENSMUSG00000031990 ENSMUST00000213682 Jam3 protein_coding Interval_142990 chr6 148099759 148100082 + 0 NA intron (ENSMUSG00000030303.15, intron 1 of 12) protein_coding-intron (ENSMUSG00000030303.15, intron 1 of 11) -32047 ENSMUSG00000089948.1 ENSMUSG00000089948 ENSMUST00000162391 Far2os1 antisense Interval_38651 chr12 80812398 80812714 + 0 NA intron (ENSMUSG00000021133.9, intron 1 of 6) protein_coding-intron (ENSMUSG00000021133.9, intron 1 of 5) 22046 ENSMUSG00000021133.9 ENSMUSG00000021133 ENSMUST00000219720 Susd6 protein_coding Interval_10487 chr1 171269665 171271371 + 0 NA promoter-TSS (ENSMUSG00000052423.14) protein_coding-promoter-TSS (ENSMUSG00000052423.14) 179 ENSMUSG00000052423.14 ENSMUSG00000052423 ENSMUST00000132890 B4galt3 protein_coding Interval_156076 chr8 43594861 43595468 + 0 NA Intergenic Intergenic -18457 ENSMUSG00000048516.2 ENSMUSG00000048516 ENSMUST00000049577 Adam26a protein_coding Interval_170091 chr9 104366752 104367372 + 0 NA intron (ENSMUSG00000099599.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000099599.1, intron 1 of 2) 5230 ENSMUSG00000099599.1 ENSMUSG00000099599 ENSMUST00000191599 Gm28548 lincRNA Interval_174738 chrX 164419016 164420205 + 0 NA promoter-TSS (ENSMUSG00000031381.16) protein_coding-promoter-TSS (ENSMUSG00000031381.16) -177 ENSMUSG00000031381.16 ENSMUSG00000031381 ENSMUST00000155849 Piga protein_coding Interval_63648 chr15 102528089 102528379 + 0 NA TTS (ENSMUSG00000099083.7) protein_coding-TTS (ENSMUSG00000099083.7) -3292 ENSMUSG00000023052.8 ENSMUSG00000023052 ENSMUST00000184659 Npff protein_coding Interval_102641 chr3 28780765 28782122 + 0 NA promoter-TSS (ENSMUSG00000091329.2) antisense-promoter-TSS (ENSMUSG00000091329.2) 167 ENSMUSG00000050192.8 ENSMUSG00000050192 ENSMUST00000060500 Eif5a2 protein_coding Interval_82461 chr18 74218281 74219495 + 0 NA promoter-TSS (ENSMUSG00000024560.7) protein_coding-promoter-TSS (ENSMUSG00000024560.7) 1017 ENSMUSG00000024560.7 ENSMUSG00000024560 ENSMUST00000236679 Cxxc1 protein_coding Interval_164398 chr9 36744383 36745190 + 0 NA intron (ENSMUSG00000032116.18, intron 11 of 17) protein_coding-intron (ENSMUSG00000032116.18, intron 11 of 17) -22041 ENSMUSG00000032113.16 ENSMUSG00000032113 ENSMUST00000172742 Chek1 protein_coding Interval_158723 chr8 85554439 85555987 + 0 NA exon (ENSMUSG00000031701.6, exon 1 of 9) protein_coding-exon (ENSMUSG00000031701.6, exon 1 of 9) -1747 ENSMUSG00000031701.6 ENSMUSG00000031701 ENSMUST00000211630 Dnaja2 protein_coding Interval_129808 chr5 122474931 122475335 + 0 NA intron (ENSMUSG00000029467.15, intron 5 of 20) protein_coding-intron (ENSMUSG00000029467.15, intron 5 of 19) 9866 ENSMUSG00000105434.1 ENSMUSG00000105434 ENSMUST00000197944 Gm43359 TEC Interval_158855 chr8 87349840 87350200 + 0 NA Intergenic Intergenic 23055 ENSMUSG00000098768.1 ENSMUSG00000098768 ENSMUST00000184995 Gm27207 lincRNA Interval_30642 chr11 95635075 95636014 + 0 NA Intergenic Intergenic 12884 ENSMUSG00000084856.1 ENSMUSG00000084856 ENSMUST00000156822 Gm11528 lincRNA Interval_142137 chr6 137544449 137544926 + 0 NA intron (ENSMUSG00000015766.14, intron 1 of 20) protein_coding-intron (ENSMUSG00000015766.14, intron 2 of 21) 26072 ENSMUSG00000015766.14 ENSMUSG00000015766 ENSMUST00000205037 Eps8 protein_coding Interval_105325 chr3 84951844 84952844 + 0 NA exon (ENSMUSG00000028086.15, exon 1 of 11) protein_coding-exon (ENSMUSG00000028086.15, exon 1 of 11) 78453 ENSMUSG00000102919.1 ENSMUSG00000102919 ENSMUST00000193246 Gm37726 TEC Interval_242 KZ289068.1 276691 277013 + 0 NA NA NA NA NA Interval_13445 chr10 18329288 18330121 + 0 NA intron (ENSMUSG00000039835.16, intron 1 of 6) protein_coding-intron (ENSMUSG00000039835.16, intron 1 of 6) 7537 ENSMUSG00000111313.1 ENSMUSG00000111313 ENSMUST00000213578 Gm18942 processed_pseudogene Interval_12365 chr1 192661384 192663314 + 0 NA intron (ENSMUSG00000037375.16, intron 8 of 11) protein_coding-intron (ENSMUSG00000037375.16, intron 8 of 11) -83222 ENSMUSG00000094131.1 ENSMUSG00000094131 ENSMUST00000082947 Gm22265 snRNA Interval_71322 chr17 22225100 22226292 + 0 NA promoter-TSS (ENSMUSG00000096433.2) protein_coding-promoter-TSS (ENSMUSG00000096433.2) -80 ENSMUSG00000096433.2 ENSMUSG00000096433 ENSMUST00000179996 Zfp994 protein_coding Interval_60116 chr15 65874528 65874852 + 0 NA TTS (ENSMUSG00000015002.18) protein_coding-TTS (ENSMUSG00000015002.18) 16821 ENSMUSG00000092495.1 ENSMUSG00000092495 ENSMUST00000174002 Gm20405 processed_transcript Interval_3438 chr1 58362043 58362640 + 0 NA intron (ENSMUSG00000079554.2, intron 34 of 35) protein_coding-intron (ENSMUSG00000079554.2, intron 34 of 35) 23793 ENSMUSG00000103839.1 ENSMUSG00000103839 ENSMUST00000194925 Gm37607 TEC Interval_16602 chr10 64998635 64999176 + 0 NA intron (ENSMUSG00000060843.11, intron 17 of 17) protein_coding-intron (ENSMUSG00000060843.11, intron 16 of 16) 121462 ENSMUSG00000100528.1 ENSMUSG00000100528 ENSMUST00000187710 Gm28881 lincRNA Interval_169035 chr9 90664046 90664470 + 0 NA Intergenic Intergenic 69266 ENSMUSG00000099366.1 ENSMUSG00000099366 ENSMUST00000189539 Gm2497 processed_pseudogene Interval_27471 chr11 68071442 68071813 + 0 NA intron (ENSMUSG00000020903.13, intron 5 of 6) protein_coding-intron (ENSMUSG00000020903.13, intron 6 of 7) 18292 ENSMUSG00000089599.1 ENSMUSG00000089599 ENSMUST00000158974 Gm26157 rRNA Interval_82092 chr18 67674945 67675650 + 0 NA TTS (ENSMUSG00000024539.17) protein_coding-TTS (ENSMUSG00000024539.17) 14927 ENSMUSG00000024539.17 ENSMUSG00000024539 ENSMUST00000128169 Ptpn2 protein_coding Interval_56557 chr14 120336406 120336708 + 0 NA intron (ENSMUSG00000022139.17, intron 2 of 8) protein_coding-intron (ENSMUSG00000022139.17, intron 2 of 8) -42684 ENSMUSG00000022139.17 ENSMUSG00000022139 ENSMUST00000227153 Mbnl2 protein_coding Interval_161224 chr8 118827594 118827919 + 0 NA intron (ENSMUSG00000031841.19, intron 6 of 8) protein_coding-intron (ENSMUSG00000031841.19, intron 4 of 13) 100856 ENSMUSG00000087707.1 ENSMUSG00000087707 ENSMUST00000157082 Gm22999 snoRNA Interval_154532 chr8 19028668 19029321 + 0 NA Intergenic Intergenic -2428 ENSMUSG00000053790.3 ENSMUSG00000053790 ENSMUST00000066416 Defb38 protein_coding Interval_122525 chr5 23601833 23602211 + 0 NA intron (ENSMUSG00000062604.11, intron 2 of 5) protein_coding-intron (ENSMUSG00000062604.11, intron 1 of 14) -59904 ENSMUSG00000062604.11 ENSMUSG00000062604 ENSMUST00000196592 Srpk2 protein_coding Interval_66821 chr16 37889456 37889745 + 0 NA TTS (ENSMUSG00000034158.9) protein_coding-TTS (ENSMUSG00000034158.9) 7058 ENSMUSG00000083405.1 ENSMUSG00000083405 ENSMUST00000119947 Gm15725 transcribed_processed_pseudogene Interval_22983 chr11 18399127 18399962 + 0 NA Intergenic Intergenic -36698 ENSMUSG00000102178.1 ENSMUSG00000102178 ENSMUST00000193385 Gm37869 TEC Interval_94848 chr2 96791780 96792131 + 0 NA intron (ENSMUSG00000050587.14, intron 2 of 7) protein_coding-intron (ENSMUSG00000050587.14, intron 2 of 6) -207669 ENSMUSG00000091288.1 ENSMUSG00000091288 ENSMUST00000171924 Gm17075 processed_pseudogene Interval_88089 chr19 58968920 58970829 + 0 NA intron (ENSMUSG00000048029.10, intron 10 of 10) protein_coding-intron (ENSMUSG00000048029.10, intron 13 of 13) 16697 ENSMUSG00000048029.10 ENSMUSG00000048029 ENSMUST00000201123 Eno4 protein_coding Interval_127924 chr5 109139433 109139955 + 0 NA Intergenic Intergenic -41744 ENSMUSG00000090688.2 ENSMUSG00000090688 ENSMUST00000095922 Vmn2r12 protein_coding Interval_644 chr1 9448929 9449412 + 0 NA Intergenic Intergenic -1409 ENSMUSG00000102272.1 ENSMUSG00000102272 ENSMUST00000195217 Gm7512 processed_pseudogene Interval_96823 chr2 128613103 128614415 + 0 NA intron (ENSMUSG00000014355.10, intron 47 of 47) protein_coding-intron (ENSMUSG00000014355.10, intron 47 of 47) -4129 ENSMUSG00000109931.1 ENSMUSG00000109931 ENSMUST00000209672 Gm39929 lincRNA Interval_119708 chr4 139379964 139381257 + 0 NA promoter-TSS (ENSMUSG00000066036.14) protein_coding-promoter-TSS (ENSMUSG00000066036.14) -49 ENSMUSG00000066036.14 ENSMUSG00000066036 ENSMUST00000135534 Ubr4 protein_coding Interval_113687 chr4 57632105 57632511 + 0 NA intron (ENSMUSG00000090053.9, intron 1 of 6) protein_coding-intron (ENSMUSG00000089945.13, intron 1 of 10) -5515 ENSMUSG00000089945.13 ENSMUSG00000089945 ENSMUST00000150412 Pakap protein_coding Interval_139125 chr6 95601970 95602978 + 0 NA intron (ENSMUSG00000061838.7, intron 2 of 3) protein_coding-intron (ENSMUSG00000061838.7, intron 2 of 10) 54994 ENSMUSG00000061838.7 ENSMUSG00000061838 ENSMUST00000203109 Suclg2 protein_coding Interval_153439 chr7 144803207 144803442 + 0 NA Intergenic Intergenic 11328 ENSMUSG00000108874.1 ENSMUSG00000108874 ENSMUST00000208857 Gm9711 processed_pseudogene Interval_34550 chr12 5038262 5038976 + 0 NA intron (ENSMUSG00000052812.5, intron 30 of 30) protein_coding-intron (ENSMUSG00000052812.5, intron 30 of 30) 28829 ENSMUSG00000112723.1 ENSMUSG00000112723 ENSMUST00000219035 Gm9110 processed_pseudogene Interval_86166 chr19 37506087 37506904 + 0 NA Intergenic Intergenic -14384 ENSMUSG00000053799.8 ENSMUSG00000053799 ENSMUST00000238817 Exoc6 protein_coding Interval_60542 chr15 74752453 74753657 + 0 NA promoter-TSS (ENSMUSG00000022594.14) protein_coding-promoter-TSS (ENSMUSG00000022594.14) -31 ENSMUSG00000022594.14 ENSMUSG00000022594 ENSMUST00000189696 Lynx1 protein_coding Interval_45933 chr13 59431180 59431800 + 0 NA Intergenic Intergenic -12236 ENSMUSG00000114623.1 ENSMUSG00000114623 ENSMUST00000225137 Gm34788 lincRNA Interval_136504 chr6 55009670 55010821 + 0 NA Intergenic Intergenic -17621 ENSMUSG00000002797.9 ENSMUSG00000002797 ENSMUST00000204770 Ggct protein_coding Interval_164825 chr9 42248933 42249710 + 0 NA Intergenic Intergenic 14934 ENSMUSG00000032018.14 ENSMUSG00000032018 ENSMUST00000217513 Sc5d protein_coding Interval_130954 chr5 134243706 134244602 + 0 NA promoter-TSS (ENSMUSG00000060261.15) protein_coding-promoter-TSS (ENSMUSG00000060261.15) -21932 ENSMUSG00000015950.13 ENSMUSG00000015950 ENSMUST00000126934 Ncf1 protein_coding Interval_153322 chr7 143606386 143606909 + 0 NA Intergenic Intergenic 6513 ENSMUSG00000086828.1 ENSMUSG00000086828 ENSMUST00000141299 Gm15579 antisense Interval_130615 chr5 129225732 129226308 + 0 NA Intergenic Intergenic -97503 ENSMUSG00000060419.8 ENSMUSG00000060419 ENSMUST00000140155 Rps16-ps2 processed_pseudogene Interval_56269 chr14 115555055 115555377 + 0 NA TTS (ENSMUSG00000093589.1) processed_pseudogene-TTS (ENSMUSG00000093589.1) 1306 ENSMUSG00000093589.1 ENSMUSG00000093589 ENSMUST00000176139 Gm18367 processed_pseudogene Interval_17348 chr10 76023987 76024414 + 0 NA Intergenic Intergenic -8450 ENSMUSG00000049764.8 ENSMUSG00000049764 ENSMUST00000061617 Zfp280b protein_coding Interval_83269 chr18 83266285 83266486 + 0 NA Intergenic Intergenic 59499 ENSMUSG00000118333.1 ENSMUSG00000118333 ENSMUST00000236997 4921531P14Rik lincRNA Interval_154992 chr8 25542930 25544066 + 0 NA intron (ENSMUSG00000031565.18, intron 2 of 16) protein_coding-intron (ENSMUSG00000031565.18, intron 2 of 17) 10062 ENSMUSG00000086134.1 ENSMUSG00000086134 ENSMUST00000140451 Gm16159 antisense Interval_54765 chr14 74877737 74878113 + 0 NA intron (ENSMUSG00000068015.8, intron 1 of 18) protein_coding-intron (ENSMUSG00000068015.8, intron 1 of 19) -48520 ENSMUSG00000115002.1 ENSMUSG00000115002 ENSMUST00000227773 Gm10847 antisense Interval_111078 chr4 11694270 11694875 + 0 NA Intergenic Intergenic -9885 ENSMUSG00000028214.13 ENSMUSG00000028214 ENSMUST00000029868 Gem protein_coding Interval_105104 chr3 81258810 81259481 + 0 NA Intergenic Intergenic 146427 ENSMUSG00000102223.1 ENSMUSG00000102223 ENSMUST00000193327 Gm37300 processed_pseudogene Interval_133491 chr6 5755227 5755890 + 0 NA intron (ENSMUSG00000029757.16, intron 2 of 3) protein_coding-intron (ENSMUSG00000029757.16, intron 1 of 15) -1861 ENSMUSG00000029757.16 ENSMUSG00000029757 ENSMUST00000203520 Dync1i1 protein_coding Interval_117650 chr4 125281662 125283087 + 0 NA Intergenic Intergenic 53777 ENSMUSG00000087010.1 ENSMUSG00000087010 ENSMUST00000130055 1700041M05Rik lincRNA Interval_10423 chr1 170708144 170708419 + 0 NA exon (ENSMUSG00000026663.6, exon 16 of 16) protein_coding-exon (ENSMUSG00000026663.6, exon 16 of 16) 43542 ENSMUSG00000096310.1 ENSMUSG00000096310 ENSMUST00000180190 Gm23523 snRNA Interval_133659 chr6 8142098 8142723 + 0 NA intron (ENSMUSG00000068794.7, intron 11 of 34) protein_coding-intron (ENSMUSG00000068794.7, intron 11 of 34) 37764 ENSMUSG00000068794.7 ENSMUSG00000068794 ENSMUST00000213284 Col28a1 protein_coding Interval_160031 chr8 105912909 105913114 + 0 NA exon (ENSMUSG00000048310.8, exon 2 of 3) protein_coding-exon (ENSMUSG00000048310.8, exon 2 of 3) 12570 ENSMUSG00000048310.8 ENSMUSG00000048310 ENSMUST00000049699 Pskh1 protein_coding Interval_125976 chr5 76411037 76411623 + 0 NA TTS (ENSMUSG00000107160.1) processed_pseudogene-TTS (ENSMUSG00000107160.1) 976 ENSMUSG00000107160.1 ENSMUSG00000107160 ENSMUST00000201954 Gm42666 processed_pseudogene Interval_69788 chr16 96344789 96345599 + 0 NA Intergenic Intergenic -16600 ENSMUSG00000117081.1 ENSMUSG00000117081 ENSMUST00000113795 Gm49948 protein_coding Interval_170689 chr9 110100410 110101392 + 0 NA exon (ENSMUSG00000032480.17, exon 1 of 19) protein_coding-exon (ENSMUSG00000032480.17, exon 1 of 19) 8238 ENSMUSG00000098956.1 ENSMUSG00000098956 ENSMUST00000184122 Gm27855 misc_RNA Interval_73702 chr17 42875687 42877114 + 0 NA promoter-TSS (ENSMUSG00000061665.7) protein_coding-promoter-TSS (ENSMUSG00000061665.7) -45370 ENSMUSG00000061665.7 ENSMUSG00000061665 ENSMUST00000233626 Cd2ap protein_coding Interval_54685 chr14 73293025 73294078 + 0 NA intron (ENSMUSG00000022105.6, intron 4 of 26) protein_coding-intron (ENSMUSG00000022105.6, intron 4 of 26) -41541 ENSMUSG00000115573.1 ENSMUSG00000115573 ENSMUST00000226676 Gm49131 processed_pseudogene Interval_38173 chr12 76182211 76182576 + 0 NA Intergenic Intergenic -5134 ENSMUSG00000021055.14 ENSMUSG00000021055 ENSMUST00000076634 Esr2 protein_coding Interval_130462 chr5 127843879 127844871 + 0 NA intron (ENSMUSG00000034310.8, intron 5 of 8) protein_coding-intron (ENSMUSG00000034310.8, intron 5 of 8) -32958 ENSMUSG00000061331.5 ENSMUSG00000061331 ENSMUST00000109542 Gm17132 unprocessed_pseudogene Interval_5737 chr1 91346817 91347284 + 0 NA exon (ENSMUSG00000049515.12, exon 9 of 9) protein_coding-exon (ENSMUSG00000049515.12, exon 9 of 9) -3966 ENSMUSG00000026308.8 ENSMUSG00000026308 ENSMUST00000027533 Klhl30 protein_coding Interval_111677 chr4 25727600 25728318 + 0 NA intron (ENSMUSG00000055373.8, intron 1 of 2) protein_coding-intron (ENSMUSG00000055373.8, intron 1 of 2) 71896 ENSMUSG00000055373.8 ENSMUSG00000055373 ENSMUST00000149875 Fut9 protein_coding Interval_45075 chr13 51879000 51879453 + 0 NA Intergenic Intergenic 32482 ENSMUSG00000021453.2 ENSMUSG00000021453 ENSMUST00000132480 Gadd45g protein_coding Interval_170597 chr9 109127845 109128482 + 0 NA Intergenic Intergenic 22662 ENSMUSG00000053646.13 ENSMUSG00000053646 ENSMUST00000194734 Plxnb1 protein_coding Interval_82656 chr18 75689883 75690316 + 0 NA intron (ENSMUSG00000052928.9, intron 1 of 11) protein_coding-intron (ENSMUSG00000052928.9, intron 1 of 11) -52826 ENSMUSG00000052928.9 ENSMUSG00000052928 ENSMUST00000235147 Ctif protein_coding Interval_149381 chr7 97919371 97920395 + 0 NA promoter-TSS (ENSMUSG00000035582.13) protein_coding-promoter-TSS (ENSMUSG00000035582.13) 1638 ENSMUSG00000108424.1 ENSMUSG00000108424 ENSMUST00000206161 Gm44590 processed_pseudogene Interval_111376 chr4 20007049 20009385 + 0 NA promoter-TSS (ENSMUSG00000073988.13) protein_coding-promoter-TSS (ENSMUSG00000073988.13) 279 ENSMUSG00000073988.13 ENSMUSG00000073988 ENSMUST00000098244 Ttpa protein_coding Interval_19800 chr10 109221292 109221564 + 0 NA Intergenic Intergenic 105423 ENSMUSG00000105768.1 ENSMUSG00000105768 ENSMUST00000195954 Gm44495 miRNA Interval_125298 chr5 66034023 66035073 + 0 NA intron (ENSMUSG00000070780.11, intron 1 of 4) protein_coding-intron (ENSMUSG00000070780.11, intron 3 of 5) -33215 ENSMUSG00000054598.13 ENSMUSG00000054598 ENSMUST00000201302 9130230L23Rik protein_coding Interval_72045 chr17 27705458 27705868 + 0 NA promoter-TSS (ENSMUSG00000040276.15) protein_coding-promoter-TSS (ENSMUSG00000040276.15) 12686 ENSMUSG00000024215.14 ENSMUSG00000024215 ENSMUST00000138970 Spdef protein_coding Interval_159510 chr8 95167760 95167950 + 0 NA intron (ENSMUSG00000031788.14, intron 1 of 4) protein_coding-intron (ENSMUSG00000031788.14, intron 1 of 4) 29545 ENSMUSG00000110475.1 ENSMUSG00000110475 ENSMUST00000212925 Gm31036 antisense Interval_31597 chr11 101610585 101611233 + 0 NA exon (ENSMUSG00000086617.1, exon 1 of 3) lincRNA-exon (ENSMUSG00000086617.1, exon 1 of 3) 209 ENSMUSG00000086617.1 ENSMUSG00000086617 ENSMUST00000139424 Gm11635 lincRNA Interval_138168 chr6 85843688 85843983 + 0 NA promoter-TSS (ENSMUSG00000040078.9) processed_pseudogene-promoter-TSS (ENSMUSG00000040078.9) -145 ENSMUSG00000040078.9 ENSMUSG00000040078 ENSMUST00000160012 Ptges3-ps processed_pseudogene Interval_118397 chr4 131115239 131115656 + 0 NA Intergenic Intergenic -104973 ENSMUSG00000086262.7 ENSMUSG00000086262 ENSMUST00000153810 A930031H19Rik lincRNA Interval_87400 chr19 48822438 48822728 + 0 NA Intergenic Intergenic 11447 ENSMUSG00000117930.1 ENSMUSG00000117930 ENSMUST00000236384 Gm50436 TEC Interval_112883 chr4 45798767 45799523 + 0 NA promoter-TSS (ENSMUSG00000035561.5) protein_coding-promoter-TSS (ENSMUSG00000035561.5) 24 ENSMUSG00000035561.5 ENSMUSG00000035561 ENSMUST00000172750 Aldh1b1 protein_coding Interval_163545 chr9 22014024 22014369 + 0 NA TTS (ENSMUSG00000003402.14) protein_coding-TTS (ENSMUSG00000003402.14) 11390 ENSMUSG00000003402.14 ENSMUSG00000003402 ENSMUST00000214565 Prkcsh protein_coding Interval_112580 chr4 43381355 43384150 + 0 NA promoter-TSS (ENSMUSG00000035969.15) protein_coding-promoter-TSS (ENSMUSG00000035969.15) -31944 ENSMUSG00000035969.15 ENSMUSG00000035969 ENSMUST00000123447 Rusc2 protein_coding Interval_129601 chr5 121230764 121230965 + 0 NA intron (ENSMUSG00000042744.16, intron 1 of 75) protein_coding-intron (ENSMUSG00000042744.16, intron 1 of 75) 24140 ENSMUSG00000029614.13 ENSMUSG00000029614 ENSMUST00000138621 Rpl6 protein_coding Interval_11096 chr1 179334103 179334768 + 0 NA intron (ENSMUSG00000055067.15, intron 5 of 11) protein_coding-intron (ENSMUSG00000055067.15, intron 5 of 11) 183570 ENSMUSG00000055067.15 ENSMUSG00000055067 ENSMUST00000194237 Smyd3 protein_coding Interval_121720 chr5 5698697 5699388 + 0 NA TTS (ENSMUSG00000105996.1) TEC-TTS (ENSMUSG00000105996.1) 2184 ENSMUSG00000105996.1 ENSMUSG00000105996 ENSMUST00000197972 Gm43219 TEC Interval_8171 chr1 136231430 136232010 + 0 NA intron (ENSMUSG00000041605.16, intron 1 of 9) protein_coding-intron (ENSMUSG00000041605.16, intron 1 of 9) -1701 ENSMUSG00000041605.16 ENSMUSG00000041605 ENSMUST00000195177 Inava protein_coding Interval_8861 chr1 151613285 151613471 + 0 NA intron (ENSMUSG00000026483.13, intron 1 of 13) protein_coding-intron (ENSMUSG00000026483.13, intron 1 of 14) 42005 ENSMUSG00000026483.13 ENSMUSG00000026483 ENSMUST00000086267 Fam129a protein_coding Interval_115355 chr4 97947494 97947692 + 0 NA intron (ENSMUSG00000028565.18, intron 1 of 5) protein_coding-intron (ENSMUSG00000028565.18, intron 2 of 9) 174859 ENSMUSG00000028565.18 ENSMUSG00000028565 ENSMUST00000133011 Nfia protein_coding Interval_47563 chr13 88771392 88772151 + 0 NA Intergenic Intergenic -49717 ENSMUSG00000034488.14 ENSMUSG00000034488 ENSMUST00000043111 Edil3 protein_coding Interval_174130 chrX 135963152 135963930 + 0 NA Intergenic Intergenic -25006 ENSMUSG00000083223.1 ENSMUSG00000083223 ENSMUST00000117300 Gm15016 processed_pseudogene Interval_116215 chr4 108789849 108790134 + 0 NA Intergenic Intergenic -9488 ENSMUSG00000034557.14 ENSMUSG00000034557 ENSMUST00000042185 Zfyve9 protein_coding Interval_101952 chr3 12921489 12921836 + 0 NA Intergenic Intergenic -28248 ENSMUSG00000103950.1 ENSMUSG00000103950 ENSMUST00000192577 Gm8939 processed_pseudogene Interval_80286 chr18 38834625 38835257 + 0 NA intron (ENSMUSG00000118193.1, intron 1 of 5) protein_coding-intron (ENSMUSG00000118193.1, intron 1 of 5) 32062 ENSMUSG00000036585.16 ENSMUSG00000036585 ENSMUST00000134864 Fgf1 protein_coding Interval_85021 chr19 21611518 21611970 + 0 NA intron (ENSMUSG00000035171.9, intron 4 of 5) protein_coding-intron (ENSMUSG00000035171.9, intron 2 of 3) 40866 ENSMUSG00000035171.9 ENSMUSG00000035171 ENSMUST00000178781 1110059E24Rik protein_coding Interval_37612 chr12 70332893 70333668 + 0 NA intron (ENSMUSG00000021071.17, intron 1 of 9) protein_coding-intron (ENSMUSG00000021071.17, intron 1 of 11) -14182 ENSMUSG00000112945.1 ENSMUSG00000112945 ENSMUST00000223521 Gm32151 bidirectional_promoter_lncRNA Interval_94089 chr2 83758618 83759918 + 0 NA exon (ENSMUSG00000085335.1, exon 1 of 2) processed_transcript-exon (ENSMUSG00000085335.1, exon 1 of 2) 597 ENSMUSG00000085335.1 ENSMUSG00000085335 ENSMUST00000152569 Gm13684 processed_transcript Interval_46886 chr13 73117261 73118167 + 0 NA Intergenic Intergenic -115681 ENSMUSG00000113952.1 ENSMUSG00000113952 ENSMUST00000223231 Rpl31-ps2 processed_pseudogene Interval_53383 chr14 56810972 56812963 + 0 NA promoter-TSS (ENSMUSG00000040123.17) protein_coding-promoter-TSS (ENSMUSG00000040123.17) -22 ENSMUSG00000100017.2 ENSMUSG00000100017 ENSMUST00000186474 2410022M11Rik bidirectional_promoter_lncRNA Interval_153255 chr7 142947614 142950316 + 0 NA Intergenic Intergenic -17845 ENSMUSG00000000214.11 ENSMUSG00000000214 ENSMUST00000140344 Th protein_coding Interval_136476 chr6 54829944 54830219 + 0 NA intron (ENSMUSG00000058446.14, intron 1 of 3) protein_coding-intron (ENSMUSG00000058446.14, intron 1 of 4) 12811 ENSMUSG00000058446.14 ENSMUSG00000058446 ENSMUST00000127331 Znrf2 protein_coding Interval_137856 chr6 82970922 82971592 + 0 NA intron (ENSMUSG00000030041.9, intron 3 of 9) protein_coding-intron (ENSMUSG00000030041.9, intron 3 of 9) 18477 ENSMUSG00000107701.1 ENSMUSG00000107701 ENSMUST00000203190 Gm19287 processed_pseudogene Interval_167154 chr9 65676207 65676818 + 0 NA promoter-TSS (ENSMUSG00000040652.16) protein_coding-promoter-TSS (ENSMUSG00000040652.16) 6800 ENSMUSG00000040652.16 ENSMUSG00000040652 ENSMUST00000128664 Oaz2 protein_coding Interval_10210 chr1 167220503 167221100 + 0 NA Intergenic Intergenic 16034 ENSMUSG00000026558.13 ENSMUSG00000026558 ENSMUST00000193579 Uck2 protein_coding Interval_6362 chr1 106332679 106333286 + 0 NA intron (ENSMUSG00000044340.7, intron 4 of 16) protein_coding-intron (ENSMUSG00000044340.7, intron 4 of 16) 51557 ENSMUSG00000044340.7 ENSMUSG00000044340 ENSMUST00000124895 Phlpp1 protein_coding Interval_15292 chr10 44265734 44266811 + 0 NA Intergenic Intergenic -2143 ENSMUSG00000038160.7 ENSMUSG00000038160 ENSMUST00000217412 Atg5 protein_coding Interval_76985 chr17 85390202 85390469 + 0 NA intron (ENSMUSG00000071037.6, intron 3 of 10) protein_coding-intron (ENSMUSG00000071037.6, intron 3 of 10) -108298 ENSMUSG00000097803.1 ENSMUSG00000097803 ENSMUST00000181130 Rpl31-ps16 processed_pseudogene Interval_51174 chr14 24464741 24465147 + 0 NA intron (ENSMUSG00000025280.8, intron 17 of 29) protein_coding-intron (ENSMUSG00000025280.8, intron 17 of 30) 14481 ENSMUSG00000025280.8 ENSMUSG00000025280 ENSMUST00000225014 Polr3a protein_coding Interval_166062 chr9 56168843 56169054 + 0 NA Intergenic Intergenic -3471 ENSMUSG00000032324.11 ENSMUSG00000032324 ENSMUST00000216320 Tspan3 protein_coding Interval_30611 chr11 95446275 95447326 + 0 NA intron (ENSMUSG00000057522.15, intron 2 of 4) protein_coding-intron (ENSMUSG00000057522.15, intron 1 of 9) 15921 ENSMUSG00000083208.1 ENSMUSG00000083208 ENSMUST00000120533 Gm11522 processed_pseudogene Interval_50915 chr14 20737018 20737691 + 0 NA TTS (ENSMUSG00000021820.18) protein_coding-TTS (ENSMUSG00000021820.18) -7036 ENSMUSG00000039308.6 ENSMUSG00000039308 ENSMUST00000225320 Ndst2 protein_coding Interval_170422 chr9 107821921 107822202 + 0 NA intron (ENSMUSG00000032582.14, intron 2 of 2) protein_coding-intron (ENSMUSG00000032582.14, intron 6 of 20) -2049 ENSMUSG00000102670.1 ENSMUSG00000102670 ENSMUST00000193842 Gm37436 TEC Interval_148542 chr7 82274440 82276087 + 0 NA intron (ENSMUSG00000030638.13, intron 5 of 5) protein_coding-intron (ENSMUSG00000030638.13, intron 5 of 8) -67005 ENSMUSG00000109479.1 ENSMUSG00000109479 ENSMUST00000208587 Gm44919 TEC Interval_36876 chr12 54877383 54877696 + 0 NA Intergenic Intergenic -14741 ENSMUSG00000062929.8 ENSMUSG00000062929 ENSMUST00000223095 Cfl2 protein_coding Interval_53509 chr14 57934354 57935968 + 0 NA intron (ENSMUSG00000021973.9, intron 6 of 7) protein_coding-intron (ENSMUSG00000021973.9, intron 6 of 11) -15229 ENSMUSG00000021973.9 ENSMUSG00000021973 ENSMUST00000225116 Micu2 protein_coding Interval_142621 chr6 144337349 144337855 + 0 NA intron (ENSMUSG00000041540.16, intron 4 of 6) protein_coding-intron (ENSMUSG00000041540.16, intron 4 of 13) -128034 ENSMUSG00000041540.16 ENSMUSG00000041540 ENSMUST00000150087 Sox5 protein_coding Interval_168560 chr9 83566391 83566648 + 0 NA intron (ENSMUSG00000032261.16, intron 1 of 3) protein_coding-intron (ENSMUSG00000032261.16, intron 1 of 3) 6770 ENSMUSG00000110950.1 ENSMUSG00000110950 ENSMUST00000213703 Gm39384 lincRNA Interval_140475 chr6 118561693 118562789 + 0 NA promoter-TSS (ENSMUSG00000007827.10) protein_coding-promoter-TSS (ENSMUSG00000007827.10) -39006 ENSMUSG00000007827.10 ENSMUSG00000007827 ENSMUST00000188022 Ankrd26 protein_coding Interval_160007 chr8 105709445 105709834 + 0 NA TTS (ENSMUSG00000013158.6) protein_coding-TTS (ENSMUSG00000013158.6) -1494 ENSMUSG00000013155.10 ENSMUSG00000013155 ENSMUST00000013299 Enkd1 protein_coding Interval_6952 chr1 121319824 121320703 + 0 NA promoter-TSS (ENSMUSG00000003721.14) protein_coding-promoter-TSS (ENSMUSG00000003721.14) 7456 ENSMUSG00000003721.14 ENSMUSG00000003721 ENSMUST00000161068 Insig2 protein_coding Interval_62582 chr15 94876090 94876261 + 0 NA intron (ENSMUSG00000063296.5, intron 3 of 7) protein_coding-intron (ENSMUSG00000063296.5, intron 3 of 7) 110963 ENSMUSG00000077447.1 ENSMUSG00000077447 ENSMUST00000104259 Gm23129 snoRNA Interval_134375 chr6 27264886 27265161 + 0 NA Intergenic Intergenic 178930 ENSMUSG00000107377.1 ENSMUSG00000107377 ENSMUST00000202562 Gm42801 TEC Interval_8937 chr1 152517191 152517392 + 0 NA exon (ENSMUSG00000026482.13, exon 18 of 18) protein_coding-exon (ENSMUSG00000026482.13, exon 18 of 18) 35753 ENSMUSG00000026482.13 ENSMUSG00000026482 ENSMUST00000149536 Rgl1 protein_coding Interval_5982 chr1 93712846 93714089 + 0 NA intron (ENSMUSG00000026279.14, intron 1 of 2) protein_coding-intron (ENSMUSG00000026279.14, intron 5 of 5) -17637 ENSMUSG00000101952.1 ENSMUSG00000101952 ENSMUST00000188846 Gm10550 antisense Interval_31035 chr11 97815629 97816351 + 0 NA TTS (ENSMUSG00000038366.15) protein_coding-TTS (ENSMUSG00000038366.15) 742 ENSMUSG00000038366.15 ENSMUSG00000038366 ENSMUST00000107568 Lasp1 protein_coding Interval_99639 chr2 163823325 163824270 + 0 NA intron (ENSMUSG00000027656.7, intron 2 of 4) protein_coding-intron (ENSMUSG00000027656.7, intron 2 of 4) 2936 ENSMUSG00000027656.7 ENSMUSG00000027656 ENSMUST00000029188 Ccn5 protein_coding Interval_170577 chr9 108978484 108978719 + 0 NA intron (ENSMUSG00000025650.13, intron 38 of 43) protein_coding-intron (ENSMUSG00000025650.13, intron 100 of 117) -4053 ENSMUSG00000025650.13 ENSMUSG00000025650 ENSMUST00000138588 Col7a1 protein_coding Interval_173963 chrX 117220064 117220725 + 0 NA Intergenic Intergenic 90114 ENSMUSG00000080852.1 ENSMUSG00000080852 ENSMUST00000118153 Gm14918 processed_pseudogene Interval_145169 chr7 30434362 30435842 + 0 NA TTS (ENSMUSG00000006651.8) protein_coding-TTS (ENSMUSG00000006651.8) 2558 ENSMUSG00000109467.1 ENSMUSG00000109467 ENSMUST00000207662 Gm30646 processed_pseudogene Interval_75095 chr17 63324050 63324618 + 0 NA intron (ENSMUSG00000023965.13, intron 3 of 5) protein_coding-intron (ENSMUSG00000023965.13, intron 6 of 8) -11361 ENSMUSG00000090565.7 ENSMUSG00000090565 ENSMUST00000171379 4930405O22Rik sense_intronic Interval_129455 chr5 120296939 120298194 + 0 NA Intergenic Intergenic 9840 ENSMUSG00000080412.1 ENSMUSG00000080412 ENSMUST00000116762 Gm26474 miRNA Interval_104746 chr3 70131006 70131854 + 0 NA Intergenic Intergenic -14898 ENSMUSG00000103113.1 ENSMUSG00000103113 ENSMUST00000195440 Gm37585 processed_pseudogene Interval_17999 chr10 81292558 81293468 + 0 NA promoter-TSS (ENSMUSG00000034902.17) protein_coding-promoter-TSS (ENSMUSG00000034902.17) 50 ENSMUSG00000034902.17 ENSMUSG00000034902 ENSMUST00000159636 Pip5k1c protein_coding Interval_39796 chr12 98459873 98460304 + 0 NA intron (ENSMUSG00000033854.10, intron 4 of 4) protein_coding-intron (ENSMUSG00000033854.10, intron 4 of 6) -11754 ENSMUSG00000113927.1 ENSMUSG00000113927 ENSMUST00000222069 5330409N07Rik TEC Interval_102054 chr3 16204370 16204638 + 0 NA TTS (ENSMUSG00000047213.14) protein_coding-TTS (ENSMUSG00000047213.14) 21268 ENSMUSG00000047213.14 ENSMUSG00000047213 ENSMUST00000108346 Ythdf3 protein_coding Interval_100216 chr2 167713279 167713673 + 0 NA intron (ENSMUSG00000006462.6, intron 1 of 3) lincRNA-intron (ENSMUSG00000006462.6, intron 1 of 3) 22299 ENSMUSG00000006462.6 ENSMUSG00000006462 ENSMUST00000130679 A530013C23Rik lincRNA Interval_67095 chr16 42885207 42886431 + 0 NA exon (ENSMUSG00000116903.1, exon 4 of 4) antisense-exon (ENSMUSG00000116903.1, exon 4 of 4) -10079 ENSMUSG00000075070.6 ENSMUSG00000075070 ENSMUST00000130331 4932412D23Rik lincRNA Interval_65592 chr16 23897952 23899369 + 0 NA Intergenic Intergenic -7702 ENSMUSG00000004366.4 ENSMUSG00000004366 ENSMUST00000004480 Sst protein_coding Interval_27196 chr11 64009752 64010039 + 0 NA intron (ENSMUSG00000042148.8, intron 4 of 6) protein_coding-intron (ENSMUSG00000042148.8, intron 4 of 6) -2720 ENSMUSG00000084884.1 ENSMUSG00000084884 ENSMUST00000130860 Gm12289 antisense Interval_54671 chr14 73160571 73160806 + 0 NA intron (ENSMUSG00000022106.14, intron 5 of 15) protein_coding-intron (ENSMUSG00000022106.14, intron 4 of 14) 17825 ENSMUSG00000022106.14 ENSMUSG00000022106 ENSMUST00000170278 Rcbtb2 protein_coding Interval_58372 chr15 33886028 33886712 + 0 NA Intergenic Intergenic 54922 ENSMUSG00000115318.1 ENSMUSG00000115318 ENSMUST00000227474 Gm49089 TEC Interval_165131 chr9 44720984 44721782 + 0 NA promoter-TSS (ENSMUSG00000048537.16) protein_coding-promoter-TSS (ENSMUSG00000048537.16) -8118 ENSMUSG00000048537.16 ENSMUSG00000048537 ENSMUST00000123003 Phldb1 protein_coding Interval_70294 chr17 8293538 8294062 + 0 NA TTS (ENSMUSG00000023861.17) protein_coding-TTS (ENSMUSG00000023861.17) 10038 ENSMUSG00000023861.17 ENSMUSG00000023861 ENSMUST00000130559 Mpc1 protein_coding Interval_168523 chr9 83030672 83031463 + 0 NA intron (ENSMUSG00000111839.1, intron 3 of 3) lincRNA-intron (ENSMUSG00000111839.1, intron 3 of 3) 22464 ENSMUSG00000111839.1 ENSMUSG00000111839 ENSMUST00000216894 Gm39383 lincRNA Interval_147552 chr7 68238656 68240456 + 0 NA intron (ENSMUSG00000030553.3, intron 1 of 3) protein_coding-intron (ENSMUSG00000030553.3, intron 1 of 3) 24677 ENSMUSG00000030553.3 ENSMUSG00000030553 ENSMUST00000207874 Pgpep1l protein_coding Interval_85684 chr19 29656515 29657426 + 0 NA Intergenic Intergenic -10943 ENSMUSG00000046324.12 ENSMUSG00000046324 ENSMUST00000160907 Ermp1 protein_coding Interval_71837 chr17 26433288 26433801 + 0 NA intron (ENSMUSG00000034413.14, intron 2 of 3) protein_coding-intron (ENSMUSG00000034413.14, intron 2 of 4) 18715 ENSMUSG00000034413.14 ENSMUSG00000034413 ENSMUST00000053020 Neurl1b protein_coding Interval_31093 chr11 98088277 98089661 + 0 NA exon (ENSMUSG00000020883.18, exon 15 of 15) protein_coding-exon (ENSMUSG00000020883.18, exon 15 of 15) -3545 ENSMUSG00000084896.1 ENSMUSG00000084896 ENSMUST00000145489 Gm11632 processed_transcript Interval_103630 chr3 51302363 51302656 + 0 NA TTS (ENSMUSG00000104200.1) TEC-TTS (ENSMUSG00000104200.1) 394 ENSMUSG00000104200.1 ENSMUSG00000104200 ENSMUST00000195224 Gm37399 TEC Interval_7645 chr1 132771444 132771893 + 0 NA Intergenic Intergenic 42313 ENSMUSG00000101126.1 ENSMUSG00000101126 ENSMUST00000189499 Gm10538 antisense Interval_115940 chr4 106443180 106444239 + 0 NA intron (ENSMUSG00000044254.6, intron 11 of 11) protein_coding-intron (ENSMUSG00000044254.6, intron 11 of 11) 20620 ENSMUSG00000044254.6 ENSMUSG00000044254 ENSMUST00000049507 Pcsk9 protein_coding Interval_135960 chr6 49104237 49104962 + 0 NA intron (ENSMUSG00000029814.10, intron 8 of 9) protein_coding-intron (ENSMUSG00000029814.10, intron 9 of 14) -10388 ENSMUSG00000029814.10 ENSMUSG00000029814 ENSMUST00000203680 Igf2bp3 protein_coding Interval_69870 chr16 97743277 97743713 + 0 NA exon (ENSMUSG00000005251.15, exon 8 of 8) protein_coding-exon (ENSMUSG00000005251.15, exon 8 of 8) 20292 ENSMUSG00000005251.15 ENSMUSG00000005251 ENSMUST00000019386 Ripk4 protein_coding Interval_85806 chr19 31967928 31968221 + 0 NA Intergenic Intergenic 17990 ENSMUSG00000118366.1 ENSMUSG00000118366 ENSMUST00000237398 9130016M20Rik lincRNA Interval_60893 chr15 77661979 77662733 + 0 NA Intergenic Intergenic -5515 ENSMUSG00000116383.1 ENSMUSG00000116383 ENSMUST00000229391 Apol10c-ps transcribed_unprocessed_pseudogene Interval_27434 chr11 67656306 67658089 + 0 NA intron (ENSMUSG00000033066.16, intron 4 of 7) protein_coding-intron (ENSMUSG00000033066.16, intron 6 of 14) -38129 ENSMUSG00000020907.1 ENSMUSG00000020907 ENSMUST00000021290 Rcvrn protein_coding Interval_31417 chr11 100558982 100560115 + 0 NA promoter-TSS (ENSMUSG00000118532.1) unprocessed_pseudogene-promoter-TSS (ENSMUSG00000118532.1) 91 ENSMUSG00000118532.1 ENSMUSG00000118532 ENSMUST00000239071 BX842667.1 unprocessed_pseudogene Interval_89380 chr2 20202982 20203222 + 0 NA intron (ENSMUSG00000036617.17, intron 2 of 7) protein_coding-intron (ENSMUSG00000036617.17, intron 2 of 7) 32962 ENSMUSG00000081128.1 ENSMUSG00000081128 ENSMUST00000120816 Gm13328 processed_pseudogene Interval_73901 chr17 45390809 45391090 + 0 NA TTS (ENSMUSG00000023932.9) protein_coding-TTS (ENSMUSG00000023932.9) 42592 ENSMUSG00000023932.9 ENSMUSG00000023932 ENSMUST00000232910 Cdc5l protein_coding Interval_4089 chr1 67967281 67968603 + 0 NA Intergenic Intergenic -5734 ENSMUSG00000096031.1 ENSMUSG00000096031 ENSMUST00000178954 Gm23189 miRNA Interval_136253 chr6 52284782 52284983 + 0 NA Intergenic Intergenic -12242 ENSMUSG00000107463.1 ENSMUSG00000107463 ENSMUST00000205090 Gm44294 TEC Interval_80695 chr18 46389506 46391091 + 0 NA intron (ENSMUSG00000118002.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000118002.1, intron 1 of 1) 22933 ENSMUSG00000095541.1 ENSMUSG00000095541 ENSMUST00000116705 Gm24617 miRNA Interval_43102 chr13 24003286 24003580 + 0 NA Intergenic Intergenic 19123 ENSMUSG00000021338.17 ENSMUSG00000021338 ENSMUST00000136517 Carmil1 protein_coding Interval_122596 chr5 24084529 24086800 + 0 NA TTS (ENSMUSG00000106118.1) processed_pseudogene-TTS (ENSMUSG00000106118.1) 420 ENSMUSG00000106118.1 ENSMUSG00000106118 ENSMUST00000197900 Gm18038 processed_pseudogene Interval_54762 chr14 74857534 74857729 + 0 NA intron (ENSMUSG00000068015.8, intron 2 of 18) protein_coding-intron (ENSMUSG00000068015.8, intron 2 of 19) -62326 ENSMUSG00000068015.8 ENSMUSG00000068015 ENSMUST00000227433 Lrch1 protein_coding Interval_31150 chr11 98464403 98464725 + 0 NA TTS (ENSMUSG00000018168.8) protein_coding-TTS (ENSMUSG00000018168.8) 9244 ENSMUSG00000084621.1 ENSMUSG00000084621 ENSMUST00000122672 Gm25106 snRNA Interval_158255 chr8 80610045 80612012 + 0 NA promoter-TSS (ENSMUSG00000042353.9) protein_coding-promoter-TSS (ENSMUSG00000042353.9) -52 ENSMUSG00000042353.9 ENSMUSG00000042353 ENSMUST00000039695 Frem3 protein_coding Interval_133309 chr5 151408304 151409617 + 0 NA intron (ENSMUSG00000097321.5, intron 2 of 3) lincRNA-intron (ENSMUSG00000054622.4, intron 1 of 1) 8816 ENSMUSG00000097321.5 ENSMUSG00000097321 ENSMUST00000201853 1700028E10Rik processed_transcript Interval_156404 chr8 47942961 47943485 + 0 NA intron (ENSMUSG00000031563.8, intron 1 of 22) protein_coding-intron (ENSMUSG00000031563.8, intron 1 of 22) 44041 ENSMUSG00000064519.1 ENSMUSG00000064519 ENSMUST00000082585 n-R5s97 rRNA Interval_90269 chr2 29455224 29455932 + 0 NA intron (ENSMUSG00000026799.15, intron 3 of 4) protein_coding-intron (ENSMUSG00000026799.15, intron 3 of 7) -3616 ENSMUSG00000089597.1 ENSMUSG00000089597 ENSMUST00000158972 Gm24976 rRNA Interval_18708 chr10 89495764 89495965 + 0 NA intron (ENSMUSG00000047638.15, intron 3 of 9) protein_coding-intron (ENSMUSG00000047638.15, intron 2 of 8) 37721 ENSMUSG00000047638.15 ENSMUSG00000047638 ENSMUST00000105297 Nr1h4 protein_coding Interval_142715 chr6 145116058 145117102 + 0 NA intron (ENSMUSG00000030263.13, intron 1 of 19) protein_coding-intron (ENSMUSG00000030263.13, intron 1 of 19) 28817 ENSMUSG00000107420.1 ENSMUSG00000107420 ENSMUST00000204561 Gm43910 TEC Interval_111540 chr4 22703005 22703351 + 0 NA promoter-TSS (ENSMUSG00000080762.1) processed_pseudogene-promoter-TSS (ENSMUSG00000080762.1) -879 ENSMUSG00000080762.1 ENSMUSG00000080762 ENSMUST00000121885 Gm11879 processed_pseudogene Interval_95395 chr2 107973753 107973978 + 0 NA Intergenic Intergenic -87226 ENSMUSG00000077480.1 ENSMUSG00000077480 ENSMUST00000104292 Gm23439 snoRNA Interval_50868 chr14 20327738 20329199 + 0 NA intron (ENSMUSG00000021810.3, intron 11 of 13) protein_coding-intron (ENSMUSG00000021810.3, intron 11 of 13) 17039 ENSMUSG00000021809.10 ENSMUSG00000021809 ENSMUST00000225728 Nudt13 protein_coding Interval_159724 chr8 99466214 99467564 + 0 NA intron (ENSMUSG00000052479.5, intron 1 of 4) lincRNA-intron (ENSMUSG00000052479.5, intron 1 of 4) 39881 ENSMUSG00000090116.1 ENSMUSG00000090116 ENSMUST00000161597 Gm15680 sense_overlapping Interval_128979 chr5 116427789 116428633 + 0 NA Intergenic Intergenic -10509 ENSMUSG00000086219.7 ENSMUSG00000086219 ENSMUST00000126959 Srrm4os antisense Interval_172704 chrX 44008158 44008497 + 0 NA Intergenic Intergenic 184403 ENSMUSG00000081036.1 ENSMUSG00000081036 ENSMUST00000117508 Gm14628 processed_pseudogene Interval_22216 chr11 7213198 7215012 + 0 NA promoter-TSS (ENSMUSG00000020427.11) protein_coding-promoter-TSS (ENSMUSG00000020427.11) -182 ENSMUSG00000020427.11 ENSMUSG00000020427 ENSMUST00000135887 Igfbp3 protein_coding Interval_127256 chr5 101902411 101903587 + 0 NA intron (ENSMUSG00000043940.15, intron 27 of 64) protein_coding-intron (ENSMUSG00000043940.15, intron 30 of 66) -53608 ENSMUSG00000106451.1 ENSMUSG00000106451 ENSMUST00000196920 Gm42934 TEC Interval_71170 chr17 20747830 20748636 + 0 NA Intergenic Intergenic 18390 ENSMUSG00000067951.5 ENSMUSG00000067951 ENSMUST00000088829 Vmn1r227 protein_coding Interval_43185 chr13 24936960 24938073 + 0 NA exon (ENSMUSG00000035936.6, exon 1 of 10) protein_coding-exon (ENSMUSG00000035936.6, exon 1 of 10) 115 ENSMUSG00000086448.1 ENSMUSG00000086448 ENSMUST00000154919 9330162012Rik bidirectional_promoter_lncRNA Interval_47290 chr13 80806127 80806721 + 0 NA Intergenic Intergenic 79100 ENSMUSG00000089827.1 ENSMUSG00000089827 ENSMUST00000161006 1700023H06Rik processed_transcript Interval_122529 chr5 23607490 23607833 + 0 NA intron (ENSMUSG00000062604.11, intron 2 of 5) protein_coding-intron (ENSMUSG00000062604.11, intron 1 of 14) -65543 ENSMUSG00000062604.11 ENSMUSG00000062604 ENSMUST00000196592 Srpk2 protein_coding Interval_3381 chr1 57733613 57733897 + 0 NA Intergenic Intergenic -40407 ENSMUSG00000038305.15 ENSMUSG00000038305 ENSMUST00000164353 Spats2l protein_coding Interval_19146 chr10 95110926 95111290 + 0 NA Intergenic Intergenic -5271 ENSMUSG00000112677.1 ENSMUSG00000112677 ENSMUST00000219913 Gm48868 TEC Interval_140976 chr6 123657009 123658315 + 0 NA Intergenic Intergenic -6937 ENSMUSG00000095486.2 ENSMUSG00000095486 ENSMUST00000232854 Vmn2r22 protein_coding Interval_118402 chr4 131152112 131152755 + 0 NA Intergenic Intergenic -86844 ENSMUSG00000088041.1 ENSMUSG00000088041 ENSMUST00000157416 Gm25261 snoRNA Interval_79681 chr18 34470963 34471743 + 0 NA intron (ENSMUSG00000036501.7, intron 3 of 6) protein_coding-intron (ENSMUSG00000036501.7, intron 8 of 20) 26550 ENSMUSG00000036501.7 ENSMUSG00000036501 ENSMUST00000236598 Fam13b protein_coding Interval_28413 chr11 75715373 75716322 + 0 NA Intergenic Intergenic -35757 ENSMUSG00000020849.13 ENSMUSG00000020849 ENSMUST00000155057 Ywhae protein_coding Interval_56488 chr14 119105417 119106403 + 0 NA intron (ENSMUSG00000087479.1, intron 3 of 6) processed_transcript-intron (ENSMUSG00000087479.1, intron 3 of 6) 6945 ENSMUSG00000087479.1 ENSMUSG00000087479 ENSMUST00000140488 Gm16835 processed_transcript Interval_85116 chr19 22987147 22987395 + 0 NA exon (ENSMUSG00000052387.16, exon 25 of 25) protein_coding-exon (ENSMUSG00000052387.16, exon 25 of 25) -74183 ENSMUSG00000118155.1 ENSMUSG00000118155 ENSMUST00000235686 Gm50136 lincRNA Interval_171846 chr9 121710025 121710847 + 0 NA promoter-TSS (ENSMUSG00000032526.11) protein_coding-promoter-TSS (ENSMUSG00000032526.11) -31 ENSMUSG00000032526.11 ENSMUSG00000032526 ENSMUST00000217579 Ss18l2 protein_coding Interval_73849 chr17 44591028 44591371 + 0 NA intron (ENSMUSG00000039153.17, intron 6 of 6) protein_coding-intron (ENSMUSG00000039153.17, intron 5 of 5) 29209 ENSMUSG00000090048.1 ENSMUSG00000090048 ENSMUST00000160203 Runx2os3 antisense Interval_40231 chr12 102658056 102659076 + 0 NA intron (ENSMUSG00000057963.9, intron 2 of 4) protein_coding-intron (ENSMUSG00000057963.9, intron 2 of 9) -17632 ENSMUSG00000057963.9 ENSMUSG00000057963 ENSMUST00000178697 Itpk1 protein_coding Interval_136405 chr6 54164730 54165672 + 0 NA intron (ENSMUSG00000004633.17, intron 1 of 5) protein_coding-intron (ENSMUSG00000004633.17, intron 1 of 12) 12482 ENSMUSG00000080205.2 ENSMUSG00000080205 ENSMUST00000112504 Gm15526 processed_pseudogene Interval_99289 chr2 158695262 158696358 + 0 NA promoter-TSS (ENSMUSG00000037754.13) protein_coding-promoter-TSS (ENSMUSG00000037754.13) -325 ENSMUSG00000037754.13 ENSMUSG00000037754 ENSMUST00000145073 Ppp1r16b protein_coding Interval_123426 chr5 32437630 32438844 + 0 NA Intergenic Intergenic 18234 ENSMUSG00000107211.1 ENSMUSG00000107211 ENSMUST00000202263 Gm5864 processed_pseudogene Interval_54024 chr14 64589268 64590793 + 0 NA promoter-TSS (ENSMUSG00000065597.1) miRNA-promoter-TSS (ENSMUSG00000065597.1) 335 ENSMUSG00000097545.7 ENSMUSG00000097545 ENSMUST00000186703 Mir124a-1hg lincRNA Interval_126116 chr5 77594352 77594912 + 0 NA Intergenic Intergenic 75214 ENSMUSG00000089415.1 ENSMUSG00000089415 ENSMUST00000158790 Gm22011 snoRNA Interval_3564 chr1 59613650 59614406 + 0 NA intron (ENSMUSG00000047361.16, intron 2 of 4) protein_coding-intron (ENSMUSG00000047361.16, intron 13 of 19) -12552 ENSMUSG00000089276.1 ENSMUSG00000089276 ENSMUST00000158651 Gm24545 misc_RNA Interval_109279 chr3 138592489 138594552 + 0 NA Intergenic Intergenic -7612 ENSMUSG00000104680.1 ENSMUSG00000104680 ENSMUST00000200462 Gm9415 processed_pseudogene Interval_139997 chr6 113306304 113307836 + 0 NA promoter-TSS (ENSMUSG00000001632.16) protein_coding-promoter-TSS (ENSMUSG00000001632.16) -243 ENSMUSG00000001632.16 ENSMUSG00000001632 ENSMUST00000131594 Brpf1 protein_coding Interval_118765 chr4 133605028 133605618 + 0 NA TTS (ENSMUSG00000037553.14) protein_coding-TTS (ENSMUSG00000037553.14) -3155 ENSMUSG00000047281.3 ENSMUSG00000047281 ENSMUST00000057311 Sfn protein_coding Interval_17297 chr10 75684133 75684404 + 0 NA TTS (ENSMUSG00000020196.10) protein_coding-TTS (ENSMUSG00000020196.10) -40260 ENSMUSG00000006342.15 ENSMUSG00000006342 ENSMUST00000077610 Susd2 protein_coding Interval_96170 chr2 120242809 120245624 + 0 NA TTS (ENSMUSG00000087555.1) processed_transcript-TTS (ENSMUSG00000087555.1) 892 ENSMUSG00000050211.14 ENSMUSG00000050211 ENSMUST00000152263 Pla2g4e protein_coding Interval_79107 chr18 24618072 24618882 + 0 NA TTS (ENSMUSG00000024271.8) protein_coding-TTS (ENSMUSG00000024271.8) -14962 ENSMUSG00000024270.11 ENSMUSG00000024270 ENSMUST00000152504 Slc39a6 protein_coding Interval_22897 chr11 17186765 17187082 + 0 NA intron (ENSMUSG00000078970.5, intron 1 of 12) protein_coding-intron (ENSMUSG00000033953.10, intron 2 of 5) 4816 ENSMUSG00000078970.5 ENSMUSG00000078970 ENSMUST00000046955 Wdr92 protein_coding Interval_170754 chr9 110540945 110541797 + 0 NA intron (ENSMUSG00000044791.16, intron 1 of 20) protein_coding-intron (ENSMUSG00000044791.16, intron 1 of 20) -1840 ENSMUSG00000104983.1 ENSMUSG00000104983 ENSMUST00000199595 Gm42763 TEC Interval_112862 chr4 45608965 45609247 + 0 NA Intergenic Intergenic -30638 ENSMUSG00000085980.2 ENSMUSG00000085980 ENSMUST00000211200 Gm12408 lincRNA Interval_119731 chr4 139568020 139568863 + 0 NA intron (ENSMUSG00000041025.15, intron 4 of 11) protein_coding-intron (ENSMUSG00000041025.15, intron 3 of 10) -6279 ENSMUSG00000041025.15 ENSMUSG00000041025 ENSMUST00000174078 Iffo2 protein_coding Interval_33741 chr11 118229984 118230188 + 0 NA intron (ENSMUSG00000017132.17, intron 1 of 12) protein_coding-intron (ENSMUSG00000017132.17, intron 1 of 12) -17344 ENSMUSG00000017132.17 ENSMUSG00000017132 ENSMUST00000151165 Cyth1 protein_coding Interval_125606 chr5 72558893 72560140 + 0 NA promoter-TSS (ENSMUSG00000072889.9) protein_coding-promoter-TSS (ENSMUSG00000072889.9) 107 ENSMUSG00000072889.9 ENSMUSG00000072889 ENSMUST00000198977 Nfxl1 protein_coding Interval_143221 chr7 4556430 4557617 + 0 NA intron (ENSMUSG00000035429.13, intron 11 of 19) protein_coding-intron (ENSMUSG00000035429.13, intron 11 of 19) -10050 ENSMUSG00000004961.7 ENSMUSG00000004961 ENSMUST00000206933 Syt5 protein_coding Interval_67998 chr16 62921846 62922214 + 0 NA intron (ENSMUSG00000022912.8, intron 1 of 3) protein_coding-intron (ENSMUSG00000022912.8, intron 12 of 14) 23881 ENSMUSG00000022912.8 ENSMUSG00000022912 ENSMUST00000127502 Pros1 protein_coding Interval_102342 chr3 22047390 22047897 + 0 NA Intergenic Intergenic 26446 ENSMUSG00000106527.1 ENSMUSG00000106527 ENSMUST00000200422 Gm43671 processed_pseudogene Interval_39463 chr12 88034497 88035252 + 0 NA Intergenic Intergenic 1924 ENSMUSG00000113658.1 ENSMUSG00000113658 ENSMUST00000220708 Gm46993 processed_pseudogene Interval_62838 chr15 97345376 97347571 + 0 NA intron (ENSMUSG00000044250.8, intron 3 of 5) protein_coding-intron (ENSMUSG00000044250.8, intron 3 of 5) -14729 ENSMUSG00000044250.8 ENSMUSG00000044250 ENSMUST00000226495 Pced1b protein_coding Interval_79346 chr18 30826951 30827224 + 0 NA Intergenic Intergenic -218197 ENSMUSG00000117526.1 ENSMUSG00000117526 ENSMUST00000235078 Gm41780 processed_pseudogene Interval_144249 chr7 23903028 23903276 + 0 NA Intergenic Intergenic 11143 ENSMUSG00000062598.3 ENSMUSG00000062598 ENSMUST00000078593 Vmn1r178 protein_coding Interval_53210 chr14 55146745 55147463 + 0 NA Intergenic Intergenic 14504 ENSMUSG00000077492.1 ENSMUSG00000077492 ENSMUST00000104304 Gm23596 snoRNA Interval_76894 chr17 84784897 84785587 + 0 NA exon (ENSMUSG00000117412.1, exon 1 of 1) TEC-exon (ENSMUSG00000117412.1, exon 1 of 1) 450 ENSMUSG00000117412.1 ENSMUSG00000117412 ENSMUST00000234983 Gm49979 TEC Interval_27836 chr11 70328986 70329697 + 0 NA Intergenic Intergenic -6893 ENSMUSG00000018907.10 ENSMUSG00000018907 ENSMUST00000149060 Alox12e protein_coding Interval_165423 chr9 47734143 47734362 + 0 NA intron (ENSMUSG00000032076.20, intron 1 of 8) protein_coding-intron (ENSMUSG00000032076.20, intron 1 of 8) -36889 ENSMUSG00000110959.1 ENSMUSG00000110959 ENSMUST00000214736 Gm47198 TEC Interval_15744 chr10 55703855 55704128 + 0 NA Intergenic Intergenic 398012 ENSMUSG00000112528.1 ENSMUSG00000112528 ENSMUST00000218919 Gm29794 processed_pseudogene Interval_149489 chr7 99065546 99066484 + 0 NA intron (ENSMUSG00000035354.9, intron 6 of 11) protein_coding-intron (ENSMUSG00000035354.9, intron 5 of 14) -24217 ENSMUSG00000109492.1 ENSMUSG00000109492 ENSMUST00000208990 Gm33882 processed_pseudogene Interval_84759 chr19 16342637 16343083 + 0 NA intron (ENSMUSG00000024639.5, intron 5 of 6) protein_coding-intron (ENSMUSG00000024639.5, intron 5 of 6) -27856 ENSMUSG00000098718.1 ENSMUSG00000098718 ENSMUST00000184935 Mir496b miRNA Interval_2164 chr1 36797226 36797691 + 0 NA intron (ENSMUSG00000026116.11, intron 36 of 41) protein_coding-intron (ENSMUSG00000026116.11, intron 35 of 40) 18474 ENSMUSG00000026117.10 ENSMUSG00000026117 ENSMUST00000190128 Zap70 protein_coding Interval_160075 chr8 106210130 106211570 + 0 NA promoter-TSS (ENSMUSG00000033106.6) protein_coding-promoter-TSS (ENSMUSG00000033106.6) 83 ENSMUSG00000033106.6 ENSMUSG00000033106 ENSMUST00000212397 Slc7a6os protein_coding Interval_64670 chr16 14024646 14025883 + 0 NA intron (ENSMUSG00000044117.12, intron 1 of 3) protein_coding-intron (ENSMUSG00000044117.12, intron 1 of 5) -13548 ENSMUSG00000082554.1 ENSMUSG00000082554 ENSMUST00000120696 Gm15806 processed_pseudogene Interval_123667 chr5 34388705 34389269 + 0 NA intron (ENSMUSG00000037210.16, intron 1 of 20) protein_coding-intron (ENSMUSG00000037210.16, intron 1 of 20) 37871 ENSMUSG00000029110.13 ENSMUSG00000029110 ENSMUST00000183265 Rnf4 protein_coding Interval_91526 chr2 41112501 41112696 + 0 NA intron (ENSMUSG00000049252.17, intron 36 of 62) protein_coding-intron (ENSMUSG00000049252.17, intron 39 of 90) 113741 ENSMUSG00000083260.1 ENSMUSG00000083260 ENSMUST00000121274 Gm13460 processed_pseudogene Interval_154033 chr8 12062612 12063141 + 0 NA Intergenic Intergenic 114537 ENSMUSG00000109995.1 ENSMUSG00000109995 ENSMUST00000209977 B020031H02Rik lincRNA Interval_64018 chr16 5357878 5358850 + 0 NA intron (ENSMUSG00000116029.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000116029.1, intron 1 of 2) -34207 ENSMUSG00000084573.1 ENSMUSG00000084573 ENSMUST00000122624 n-R5s30 rRNA Interval_22587 chr11 11965796 11966671 + 0 NA intron (ENSMUSG00000020176.17, intron 4 of 4) protein_coding-intron (ENSMUSG00000020176.17, intron 4 of 16) -52485 ENSMUSG00000087990.2 ENSMUSG00000087990 ENSMUST00000157365 Gm25058 scaRNA Interval_43662 chr13 34726442 34726781 + 0 NA intron (ENSMUSG00000113457.1, intron 2 of 2) lincRNA-intron (ENSMUSG00000113457.1, intron 2 of 2) -5860 ENSMUSG00000113822.1 ENSMUSG00000113822 ENSMUST00000222734 Gm47151 lincRNA Interval_23450 chr11 22695252 22695493 + 0 NA Intergenic Intergenic 37614 ENSMUSG00000085979.1 ENSMUSG00000085979 ENSMUST00000143643 Gm12055 lincRNA Interval_97005 chr2 130433109 130433661 + 0 NA intron (ENSMUSG00000027411.17, intron 1 of 9) protein_coding-intron (ENSMUSG00000027411.17, intron 1 of 23) -6937 ENSMUSG00000027411.17 ENSMUSG00000027411 ENSMUST00000134677 Vps16 protein_coding Interval_30080 chr11 89039132 89040090 + 0 NA exon (ENSMUSG00000000276.11, exon 11 of 11) protein_coding-exon (ENSMUSG00000000276.11, exon 11 of 11) 21137 ENSMUSG00000000276.11 ENSMUSG00000000276 ENSMUST00000152772 Dgke protein_coding Interval_4398 chr1 73902458 73903094 + 0 NA Intergenic Intergenic -47201 ENSMUSG00000098504.1 ENSMUSG00000098504 ENSMUST00000183826 Mir6351 miRNA Interval_133836 chr6 13088018 13088322 + 0 NA exon (ENSMUSG00000029571.14, exon 9 of 9) protein_coding-exon (ENSMUSG00000029571.14, exon 9 of 9) 18316 ENSMUSG00000029571.14 ENSMUSG00000029571 ENSMUST00000122916 Tmem106b protein_coding Interval_155301 chr8 31081359 31081561 + 0 NA Intergenic Intergenic -8178 ENSMUSG00000039661.14 ENSMUSG00000039661 ENSMUST00000160700 Dusp26 protein_coding Interval_85539 chr19 28207845 28208315 + 0 NA Intergenic Intergenic -61777 ENSMUSG00000117862.1 ENSMUSG00000117862 ENSMUST00000236360 Gm35781 processed_pseudogene Interval_104602 chr3 68708267 68709654 + 0 NA Intergenic Intergenic 14939 ENSMUSG00000027776.12 ENSMUSG00000027776 ENSMUST00000195517 Il12a protein_coding Interval_69699 chr16 95656584 95656958 + 0 NA Intergenic Intergenic -45684 ENSMUSG00000022895.16 ENSMUSG00000022895 ENSMUST00000233578 Ets2 protein_coding Interval_128528 chr5 113854383 113856127 + 0 NA intron (ENSMUSG00000004530.12, intron 2 of 5) protein_coding-intron (ENSMUSG00000004530.12, intron 3 of 10) -4906 ENSMUSG00000106623.1 ENSMUSG00000106623 ENSMUST00000198299 Gm43335 TEC Interval_23200 chr11 20506312 20506522 + 0 NA Intergenic Intergenic -36836 ENSMUSG00000049800.13 ENSMUSG00000049800 ENSMUST00000109585 Sertad2 protein_coding Interval_149322 chr7 97429235 97430407 + 0 NA Intergenic Intergenic -12302 ENSMUSG00000035686.8 ENSMUSG00000035686 ENSMUST00000206613 Thrsp protein_coding Interval_171983 chr9 123169328 123170120 + 0 NA Intergenic Intergenic 7353 ENSMUSG00000077659.1 ENSMUSG00000077659 ENSMUST00000104471 Gm23323 snoRNA Interval_102571 chr3 27914974 27915872 + 0 NA Intergenic Intergenic -19055 ENSMUSG00000043164.3 ENSMUSG00000043164 ENSMUST00000058077 Tmem212 protein_coding Interval_77247 chr17 87566424 87566721 + 0 NA intron (ENSMUSG00000117414.1, intron 3 of 3) lincRNA-intron (ENSMUSG00000117414.1, intron 3 of 3) 5082 ENSMUSG00000117414.1 ENSMUSG00000117414 ENSMUST00000234992 Gm46587 lincRNA Interval_81480 chr18 61033440 61036757 + 0 NA intron (ENSMUSG00000024619.8, intron 1 of 2) protein_coding-intron (ENSMUSG00000024619.8, intron 1 of 2) 1101 ENSMUSG00000024619.8 ENSMUSG00000024619 ENSMUST00000025521 Cdx1 protein_coding Interval_24098 chr11 30222286 30223891 + 0 NA intron (ENSMUSG00000020315.18, intron 1 of 1) protein_coding-intron (ENSMUSG00000020315.18, intron 1 of 35) -44376 ENSMUSG00000073073.4 ENSMUSG00000073073 ENSMUST00000146985 Gm8098 processed_transcript Interval_25831 chr11 52012405 52013401 + 0 NA intron (ENSMUSG00000020389.19, intron 2 of 12) protein_coding-intron (ENSMUSG00000020389.19, intron 3 of 12) 12050 ENSMUSG00000086493.1 ENSMUSG00000086493 ENSMUST00000147412 Gm12204 antisense Interval_168695 chr9 86011592 86011918 + 0 NA Intergenic Intergenic -68555 ENSMUSG00000110946.1 ENSMUSG00000110946 ENSMUST00000213921 Gm47604 lincRNA Interval_13644 chr10 20370673 20370919 + 0 NA Intergenic Intergenic -5359 ENSMUSG00000111351.1 ENSMUSG00000111351 ENSMUST00000213596 Gm48537 processed_pseudogene Interval_60174 chr15 66975674 66976014 + 0 NA intron (ENSMUSG00000091412.1, intron 1 of 1) bidirectional_promoter_lncRNA-intron (ENSMUSG00000091412.1, intron 1 of 1) -6228 ENSMUSG00000005125.13 ENSMUSG00000005125 ENSMUST00000164070 Ndrg1 protein_coding Interval_130812 chr5 130893668 130894069 + 0 NA intron (ENSMUSG00000034040.16, intron 9 of 10) protein_coding-intron (ENSMUSG00000034040.16, intron 9 of 10) 4745 ENSMUSG00000107207.1 ENSMUSG00000107207 ENSMUST00000201486 Gm42897 TEC Interval_56025 chr14 104665605 104665820 + 0 NA intron (ENSMUSG00000115432.1, intron 2 of 4) lincRNA-intron (ENSMUSG00000115432.1, intron 2 of 4) 26588 ENSMUSG00000115432.1 ENSMUSG00000115432 ENSMUST00000228036 D130009I18Rik lincRNA Interval_130665 chr5 129599259 129599788 + 0 NA intron (ENSMUSG00000029436.9, intron 2 of 3) protein_coding-intron (ENSMUSG00000029436.9, intron 6 of 9) 2897 ENSMUSG00000029436.9 ENSMUSG00000029436 ENSMUST00000177802 Mmp17 protein_coding Interval_28987 chr11 79738093 79739598 + 0 NA Intergenic Intergenic 12445 ENSMUSG00000065489.1 ENSMUSG00000065489 ENSMUST00000083555 Mir365-2 miRNA Interval_97605 chr2 140389697 140390142 + 0 NA promoter-TSS (ENSMUSG00000074764.11) protein_coding-promoter-TSS (ENSMUSG00000074764.11) 50728 ENSMUSG00000065769.1 ENSMUSG00000065769 ENSMUST00000083835 Gm23846 snRNA Interval_6403 chr1 107208516 107209734 + 0 NA intron (ENSMUSG00000073602.10, intron 1 of 7) protein_coding-intron (ENSMUSG00000073602.10, intron 1 of 7) -15568 ENSMUSG00000080729.1 ENSMUSG00000080729 ENSMUST00000120807 Gm8084 unprocessed_pseudogene Interval_132882 chr5 148494426 148496265 + 0 NA Intergenic Intergenic 38507 ENSMUSG00000106956.1 ENSMUSG00000106956 ENSMUST00000202977 Gm19617 unprocessed_pseudogene Interval_49767 chr13 114817617 114818947 + 0 NA promoter-TSS (ENSMUSG00000015536.14) protein_coding-promoter-TSS (ENSMUSG00000015536.14) -12 ENSMUSG00000015536.14 ENSMUSG00000015536 ENSMUST00000164871 Mocs2 protein_coding Interval_101822 chr3 9711139 9711342 + 0 NA intron (ENSMUSG00000027508.15, intron 3 of 8) protein_coding-intron (ENSMUSG00000027508.15, intron 2 of 7) -46367 ENSMUSG00000089794.1 ENSMUSG00000089794 ENSMUST00000160368 Gm16337 lincRNA Interval_61329 chr15 80891412 80891681 + 0 NA intron (ENSMUSG00000047888.10, intron 2 of 2) protein_coding-intron (ENSMUSG00000047888.10, intron 13 of 24) -31518 ENSMUSG00000047888.10 ENSMUSG00000047888 ENSMUST00000228525 Tnrc6b protein_coding Interval_25353 chr11 46606301 46606830 + 0 NA Intergenic Intergenic 22696 ENSMUSG00000064010.12 ENSMUSG00000064010 ENSMUST00000109227 Dppa1 protein_coding Interval_115228 chr4 94609625 94610443 + 0 NA Intergenic Intergenic -6853 ENSMUSG00000028577.13 ENSMUSG00000028577 ENSMUST00000146118 Plaa protein_coding Interval_12217 chr1 190911207 190912853 + 0 NA promoter-TSS (ENSMUSG00000089872.10) protein_coding-promoter-TSS (ENSMUSG00000089872.10) -12313 ENSMUSG00000089872.10 ENSMUSG00000089872 ENSMUST00000159066 Rps6kc1 protein_coding Interval_77900 chr18 5155183 5155831 + 0 NA Intergenic Intergenic 10224 ENSMUSG00000097888.2 ENSMUSG00000097888 ENSMUST00000180850 Gm26682 lincRNA Interval_144089 chr7 19377429 19378321 + 0 NA intron (ENSMUSG00000040734.14, intron 12 of 12) protein_coding-intron (ENSMUSG00000040734.14, intron 12 of 12) -8768 ENSMUSG00000076315.2 ENSMUSG00000076315 ENSMUST00000102360 Mir343 miRNA Interval_89917 chr2 26470880 26471151 + 0 NA promoter-TSS (ENSMUSG00000026923.15) protein_coding-promoter-TSS (ENSMUSG00000026923.15) -896 ENSMUSG00000098548.1 ENSMUSG00000098548 ENSMUST00000183922 Mir6996 miRNA Interval_10410 chr1 170538828 170539210 + 0 NA intron (ENSMUSG00000038473.14, intron 1 of 7) protein_coding-intron (ENSMUSG00000038473.14, intron 1 of 3) -91902 ENSMUSG00000102193.1 ENSMUSG00000102193 ENSMUST00000194441 Gm7299 processed_pseudogene Interval_11708 chr1 184815675 184815994 + 0 NA intron (ENSMUSG00000073481.9, intron 4 of 4) protein_coding-intron (ENSMUSG00000073481.9, intron 7 of 7) 6654 ENSMUSG00000088559.1 ENSMUSG00000088559 ENSMUST00000157934 Mir1981 miRNA Interval_64373 chr16 10907572 10908079 + 0 NA intron (ENSMUSG00000117309.1, intron 16 of 45) transcribed_unitary_pseudogene-intron (ENSMUSG00000117309.1, intron 16 of 45) 29481 ENSMUSG00000095369.2 ENSMUSG00000095369 ENSMUST00000233047 Gm21859 processed_transcript Interval_102194 chr3 19335215 19336081 + 0 NA Intergenic Intergenic 4875 ENSMUSG00000089149.1 ENSMUSG00000089149 ENSMUST00000158524 Gm22282 misc_RNA Interval_54326 chr14 67692847 67693221 + 0 NA intron (ENSMUSG00000048922.18, intron 13 of 14) protein_coding-intron (ENSMUSG00000048922.18, intron 3 of 4) -17928 ENSMUSG00000093726.1 ENSMUSG00000093726 ENSMUST00000175674 Gm20667 sense_overlapping Interval_135476 chr6 39534909 39535162 + 0 NA intron (ENSMUSG00000085058.2, intron 3 of 3) protein_coding-intron (ENSMUSG00000038456.9, intron 1 of 18) 7509 ENSMUSG00000085058.2 ENSMUSG00000085058 ENSMUST00000200951 8030453O22Rik processed_transcript Interval_157949 chr8 77156043 77156333 + 0 NA intron (ENSMUSG00000031618.13, intron 4 of 6) protein_coding-intron (ENSMUSG00000031618.13, intron 3 of 7) -9708 ENSMUSG00000089309.1 ENSMUSG00000089309 ENSMUST00000158684 Gm24838 snoRNA Interval_151993 chr7 128003946 128005442 + 0 NA exon (ENSMUSG00000042828.12, exon 1 of 6) protein_coding-exon (ENSMUSG00000042828.12, exon 1 of 6) 466 ENSMUSG00000087530.2 ENSMUSG00000087530 ENSMUST00000126205 Gm15533 antisense Interval_11418 chr1 181834575 181834957 + 0 NA intron (ENSMUSG00000004880.11, intron 3 of 13) protein_coding-intron (ENSMUSG00000004880.11, intron 3 of 13) 5802 ENSMUSG00000089429.1 ENSMUSG00000089429 ENSMUST00000158804 Gm26004 rRNA Interval_88078 chr19 58886638 58887075 + 0 NA intron (ENSMUSG00000025092.7, intron 2 of 6) protein_coding-intron (ENSMUSG00000025092.7, intron 2 of 6) 24903 ENSMUSG00000092813.1 ENSMUSG00000092813 ENSMUST00000175072 Mir3086 miRNA Interval_143461 chr7 6976176 6977554 + 0 NA promoter-TSS (ENSMUSG00000108043.2) antisense-promoter-TSS (ENSMUSG00000108043.2) -381 ENSMUSG00000109176.1 ENSMUSG00000109176 ENSMUST00000208656 Zfp264 transcribed_unprocessed_pseudogene Interval_31197 chr11 98834682 98837680 + 0 NA promoter-TSS (ENSMUSG00000038020.5) protein_coding-promoter-TSS (ENSMUSG00000038020.5) -14151 ENSMUSG00000038020.5 ENSMUSG00000038020 ENSMUST00000139889 Rapgefl1 protein_coding Interval_104325 chr3 63389834 63390184 + 0 NA Intergenic Intergenic -49242 ENSMUSG00000104336.1 ENSMUSG00000104336 ENSMUST00000192500 Gm34240 lincRNA Interval_109250 chr3 138309941 138311460 + 0 NA Intergenic Intergenic -2586 ENSMUSG00000053054.13 ENSMUSG00000053054 ENSMUST00000106247 Adh6a protein_coding Interval_76708 chr17 83613899 83614268 + 0 NA intron (ENSMUSG00000045053.2, intron 1 of 1) protein_coding-intron (ENSMUSG00000045053.2, intron 1 of 1) 17812 ENSMUSG00000045053.2 ENSMUSG00000045053 ENSMUST00000051482 Kcng3 protein_coding Interval_83717 chr19 3922640 3924084 + 0 NA intron (ENSMUSG00000024885.9, intron 2 of 6) protein_coding-intron (ENSMUSG00000024885.9, intron 2 of 9) 6365 ENSMUSG00000024885.9 ENSMUSG00000024885 ENSMUST00000237391 Aldh3b1 protein_coding Interval_64085 chr16 7472544 7472825 + 0 NA Intergenic Intergenic 236382 ENSMUSG00000115989.1 ENSMUSG00000115989 ENSMUST00000229672 Gm49533 processed_pseudogene Interval_160874 chr8 114439339 114440460 + 0 NA intron (ENSMUSG00000004637.15, intron 1 of 8) protein_coding-intron (ENSMUSG00000004637.15, intron 1 of 8) 21813 ENSMUSG00000008874.3 ENSMUSG00000008874 ENSMUST00000009018 Clec3a protein_coding Interval_39016 chr12 84483922 84484199 + 0 NA intron (ENSMUSG00000085793.2, intron 4 of 4) protein_coding-intron (ENSMUSG00000085793.2, intron 5 of 5) -33112 ENSMUSG00000021238.11 ENSMUSG00000021238 ENSMUST00000222656 Aldh6a1 protein_coding Interval_103980 chr3 56008748 56008998 + 0 NA intron (ENSMUSG00000027799.12, intron 20 of 57) protein_coding-intron (ENSMUSG00000027799.12, intron 20 of 57) 8295 ENSMUSG00000104938.1 ENSMUSG00000104938 ENSMUST00000200303 Gm42840 TEC Interval_82554 chr18 75133048 75133272 + 0 NA intron (ENSMUSG00000035765.10, intron 13 of 16) protein_coding-intron (ENSMUSG00000035765.10, intron 13 of 16) 7735 ENSMUSG00000035765.10 ENSMUSG00000035765 ENSMUST00000236840 Dym protein_coding Interval_79666 chr18 34354083 34355199 + 0 NA intron (ENSMUSG00000005873.6, intron 1 of 2) protein_coding-intron (ENSMUSG00000005873.6, intron 3 of 4) 17857 ENSMUSG00000005873.6 ENSMUSG00000005873 ENSMUST00000235153 Reep5 protein_coding Interval_16739 chr10 67804902 67805887 + 0 NA intron (ENSMUSG00000116971.1, intron 2 of 5) lincRNA-intron (ENSMUSG00000116971.1, intron 2 of 5) -12192 ENSMUSG00000111956.1 ENSMUSG00000111956 ENSMUST00000219270 Gm29774 processed_pseudogene Interval_96160 chr2 120157762 120158210 + 0 NA Intergenic Intergenic -20426 ENSMUSG00000027293.13 ENSMUSG00000027293 ENSMUST00000148073 Ehd4 protein_coding Interval_138879 chr6 92841572 92844178 + 0 NA exon (ENSMUSG00000048636.7, exon 5 of 5) protein_coding-exon (ENSMUSG00000048636.7, exon 5 of 5) 11757 ENSMUSG00000030022.14 ENSMUSG00000030022 ENSMUST00000136751 Adamts9 protein_coding Interval_147440 chr7 67228628 67229485 + 0 NA TTS (ENSMUSG00000043831.12) protein_coding-TTS (ENSMUSG00000043831.12) 6440 ENSMUSG00000043831.12 ENSMUSG00000043831 ENSMUST00000208569 Lysmd4 protein_coding Interval_91505 chr2 39660157 39660553 + 0 NA Intergenic Intergenic -1384 ENSMUSG00000108203.1 ENSMUSG00000108203 ENSMUST00000205220 Gm43944 processed_pseudogene Interval_9191 chr1 154960609 154960891 + 0 NA Intergenic Intergenic -70989 ENSMUSG00000101433.1 ENSMUSG00000101433 ENSMUST00000191584 Gm29441 processed_pseudogene Interval_162161 chr8 125616958 125617306 + 0 NA TTS (ENSMUSG00000110629.1) lincRNA-TTS (ENSMUSG00000110629.1) 32485 ENSMUSG00000110629.1 ENSMUSG00000110629 ENSMUST00000212530 4930567H12Rik lincRNA Interval_5194 chr1 86395862 86396273 + 0 NA intron (ENSMUSG00000026237.6, intron 2 of 3) protein_coding-intron (ENSMUSG00000026237.6, intron 2 of 3) 2123 ENSMUSG00000026237.6 ENSMUSG00000026237 ENSMUST00000212614 Nmur1 protein_coding Interval_171358 chr9 116974002 116974397 + 0 NA intron (ENSMUSG00000039607.17, intron 5 of 15) protein_coding-intron (ENSMUSG00000039607.17, intron 3 of 12) -84959 ENSMUSG00000092184.1 ENSMUSG00000092184 ENSMUST00000172565 Gm18489 processed_pseudogene Interval_137489 chr6 72730048 72730895 + 0 NA intron (ENSMUSG00000055799.13, intron 2 of 5) protein_coding-intron (ENSMUSG00000055799.13, intron 3 of 11) 21443 ENSMUSG00000104501.1 ENSMUSG00000104501 ENSMUST00000193564 Gm37736 TEC Interval_100519 chr2 169857032 169857664 + 0 NA intron (ENSMUSG00000047907.11, intron 1 of 2) protein_coding-intron (ENSMUSG00000047907.11, intron 1 of 1) -27545 ENSMUSG00000047907.11 ENSMUSG00000047907 ENSMUST00000140699 Tshz2 protein_coding Interval_83913 chr19 5538641 5539314 + 0 NA intron (ENSMUSG00000109695.1, intron 3 of 3) transcribed_processed_pseudogene-intron (ENSMUSG00000109695.1, intron 3 of 3) 7347 ENSMUSG00000109695.1 ENSMUSG00000109695 ENSMUST00000209326 Gm31166 transcribed_processed_pseudogene Interval_166574 chr9 61012540 61013859 + 0 NA promoter-TSS (ENSMUSG00000111290.1) lincRNA-promoter-TSS (ENSMUSG00000111290.1) -3870 ENSMUSG00000111290.1 ENSMUSG00000111290 ENSMUST00000216854 Gm5122 lincRNA Interval_27858 chr11 70432105 70433276 + 0 NA promoter-TSS (ENSMUSG00000060216.15) protein_coding-promoter-TSS (ENSMUSG00000060216.15) 8 ENSMUSG00000060216.15 ENSMUSG00000060216 ENSMUST00000144454 Arrb2 protein_coding Interval_81973 chr18 66529319 66529548 + 0 NA Intergenic Intergenic -12081 ENSMUSG00000117918.1 ENSMUSG00000117918 ENSMUST00000236080 Gm50157 processed_pseudogene Interval_40685 chr12 107267574 107269125 + 0 NA Intergenic Intergenic -62283 ENSMUSG00000082362.1 ENSMUSG00000082362 ENSMUST00000117317 Gm5187 processed_pseudogene Interval_113217 chr4 50347603 50348798 + 0 NA Intergenic Intergenic 61454 ENSMUSG00000095394.1 ENSMUSG00000095394 ENSMUST00000104120 Gm25485 snoRNA Interval_115936 chr4 106419594 106420101 + 0 NA intron (ENSMUSG00000028514.15, intron 56 of 67) protein_coding-intron (ENSMUSG00000028514.15, intron 56 of 67) 44482 ENSMUSG00000044254.6 ENSMUSG00000044254 ENSMUST00000049507 Pcsk9 protein_coding Interval_99025 chr2 156720402 156721565 + 0 NA promoter-TSS (ENSMUSG00000061689.15) protein_coding-promoter-TSS (ENSMUSG00000061689.15) -74 ENSMUSG00000086638.7 ENSMUSG00000086638 ENSMUST00000130089 4930405A21Rik processed_transcript Interval_64209 chr16 9194997 9196521 + 0 NA Intergenic Intergenic 36989 ENSMUSG00000116123.1 ENSMUSG00000116123 ENSMUST00000229655 Gm49451 lincRNA Interval_121125 chr4 153270533 153270950 + 0 NA Intergenic Intergenic 52565 ENSMUSG00000087454.1 ENSMUSG00000087454 ENSMUST00000126141 Gm13174 lincRNA Interval_166379 chr9 58755605 58757378 + 0 NA Intergenic Intergenic -60480 ENSMUSG00000093473.1 ENSMUSG00000093473 ENSMUST00000177528 Gm20620 processed_pseudogene Interval_160230 chr8 107286951 107288368 + 0 NA Intergenic Intergenic -5811 ENSMUSG00000003847.16 ENSMUSG00000003847 ENSMUST00000147588 Nfat5 protein_coding Interval_144715 chr7 27694215 27694988 + 0 NA TTS (ENSMUSG00000057093.14) protein_coding-TTS (ENSMUSG00000057093.14) 2688 ENSMUSG00000057093.14 ENSMUSG00000057093 ENSMUST00000076421 Zfp607b protein_coding Interval_118931 chr4 134516906 134517697 + 0 NA intron (ENSMUSG00000078521.2, intron 1 of 2) protein_coding-intron (ENSMUSG00000078521.2, intron 1 of 2) 6302 ENSMUSG00000078521.2 ENSMUSG00000078521 ENSMUST00000105866 Aunip protein_coding Interval_108289 chr3 123353375 123353828 + 0 NA exon (ENSMUSG00000039234.11, exon 17 of 23) protein_coding-exon (ENSMUSG00000039234.11, exon 17 of 23) 32497 ENSMUSG00000028114.16 ENSMUSG00000028114 ENSMUST00000197628 Mettl14 protein_coding Interval_30537 chr11 95000925 95001408 + 0 NA intron (ENSMUSG00000038976.12, intron 5 of 5) protein_coding-intron (ENSMUSG00000038976.12, intron 4 of 9) 8286 ENSMUSG00000038976.12 ENSMUSG00000038976 ENSMUST00000107748 Ppp1r9b protein_coding Interval_95957 chr2 118676779 118678096 + 0 NA intron (ENSMUSG00000074923.10, intron 1 of 7) protein_coding-intron (ENSMUSG00000074923.10, intron 2 of 10) 13675 ENSMUSG00000074923.10 ENSMUSG00000074923 ENSMUST00000132577 Pak6 protein_coding Interval_5416 chr1 88624546 88624893 + 0 NA Intergenic Intergenic -28366 ENSMUSG00000104057.1 ENSMUSG00000104057 ENSMUST00000194311 Gm38130 TEC Interval_51907 chr14 33716301 33716545 + 0 NA Intergenic Intergenic 71928 ENSMUSG00000064446.1 ENSMUSG00000064446 ENSMUST00000082512 Gm26228 snRNA Interval_114565 chr4 82507804 82508491 + 0 NA exon (ENSMUSG00000087413.1, exon 1 of 2) antisense-exon (ENSMUSG00000087413.1, exon 1 of 2) 131 ENSMUSG00000087413.1 ENSMUSG00000087413 ENSMUST00000139835 Gm11266 antisense Interval_51438 chr14 27523287 27524991 + 0 NA Intergenic Intergenic 3709 ENSMUSG00000064836.1 ENSMUSG00000064836 ENSMUST00000082902 Gm25697 snoRNA Interval_152590 chr7 134892788 134893693 + 0 NA intron (ENSMUSG00000073805.5, intron 2 of 2) protein_coding-intron (ENSMUSG00000058325.6, intron 27 of 51) -7430 ENSMUSG00000110167.1 ENSMUSG00000110167 ENSMUST00000210342 Gm45532 TEC Interval_26659 chr11 59519396 59520364 + 0 NA intron (ENSMUSG00000020472.14, intron 1 of 2) protein_coding-intron (ENSMUSG00000020472.14, intron 1 of 2) 6871 ENSMUSG00000020472.14 ENSMUSG00000020472 ENSMUST00000139707 Zkscan17 protein_coding Interval_68445 chr16 76904337 76904619 + 0 NA intron (ENSMUSG00000100857.2, intron 1 of 7) lincRNA-intron (ENSMUSG00000100857.2, intron 1 of 7) -37138 ENSMUSG00000116807.1 ENSMUSG00000116807 ENSMUST00000231248 Gm7501 processed_pseudogene Interval_39250 chr12 86181088 86182554 + 0 NA intron (ENSMUSG00000097543.1, intron 4 of 4) lincRNA-intron (ENSMUSG00000097543.1, intron 4 of 4) 12480 ENSMUSG00000097543.1 ENSMUSG00000097543 ENSMUST00000181667 Gm805 lincRNA Interval_115491 chr4 99372970 99374122 + 0 NA Intergenic Intergenic 12166 ENSMUSG00000103097.1 ENSMUSG00000103097 ENSMUST00000193877 Gm37556 TEC Interval_5358 chr1 87862160 87862528 + 0 NA intron (ENSMUSG00000070738.10, intron 1 of 29) protein_coding-intron (ENSMUSG00000070738.10, intron 1 of 29) -2729 ENSMUSG00000103996.1 ENSMUSG00000103996 ENSMUST00000191704 4833421G17Rik TEC Interval_76213 chr17 77362585 77362965 + 0 NA exon (ENSMUSG00000117578.1, exon 1 of 1) processed_pseudogene-exon (ENSMUSG00000117578.1, exon 1 of 1) 435 ENSMUSG00000117578.1 ENSMUSG00000117578 ENSMUST00000234215 Rpsa-ps8 processed_pseudogene Interval_10535 chr1 171561809 171562306 + 0 NA intron (ENSMUSG00000004709.14, intron 1 of 6) protein_coding-intron (ENSMUSG00000004709.14, intron 1 of 8) -17006 ENSMUSG00000004709.14 ENSMUSG00000004709 ENSMUST00000195804 Cd244a protein_coding Interval_41484 chr12 114981410 114982001 + 0 NA Intergenic Intergenic -3579 ENSMUSG00000102928.1 ENSMUSG00000102928 ENSMUST00000193988 Ighv1-46 IG_V_pseudogene Interval_138483 chr6 88564786 88567675 + 0 NA intron (ENSMUSG00000033182.12, intron 4 of 4) protein_coding-intron (ENSMUSG00000033182.12, intron 5 of 5) 47217 ENSMUSG00000107698.1 ENSMUSG00000107698 ENSMUST00000203376 Gm44430 TEC Interval_134291 chr6 24613344 24613571 + 0 NA TTS (ENSMUSG00000029684.14) protein_coding-TTS (ENSMUSG00000029684.14) 14616 ENSMUSG00000029684.14 ENSMUSG00000029684 ENSMUST00000173399 Wasl protein_coding Interval_34488 chr12 4581595 4582002 + 0 NA Intergenic Intergenic -5042 ENSMUSG00000112505.1 ENSMUSG00000112505 ENSMUST00000218537 Gm48610 lincRNA Interval_149897 chr7 102415006 102416382 + 0 NA intron (ENSMUSG00000030987.5, intron 6 of 12) protein_coding-intron (ENSMUSG00000030987.5, intron 6 of 11) -37357 ENSMUSG00000110175.1 ENSMUSG00000110175 ENSMUST00000211316 Gm18255 processed_pseudogene Interval_62564 chr15 94663344 94663878 + 0 NA intron (ENSMUSG00000063296.5, intron 2 of 2) protein_coding-intron (ENSMUSG00000063296.5, intron 2 of 7) 17775 ENSMUSG00000095169.1 ENSMUSG00000095169 ENSMUST00000103977 Gm25546 snoRNA Interval_114683 chr4 83726900 83727201 + 0 NA intron (ENSMUSG00000052407.17, intron 21 of 25) protein_coding-intron (ENSMUSG00000052407.17, intron 21 of 25) -16627 ENSMUSG00000097942.1 ENSMUSG00000097942 ENSMUST00000182894 Gm26968 sense_intronic Interval_34075 chr11 120367670 120368121 + 0 NA TTS (ENSMUSG00000025380.2) protein_coding-TTS (ENSMUSG00000025380.2) 1353 ENSMUSG00000025380.2 ENSMUSG00000025380 ENSMUST00000130476 Fscn2 protein_coding Interval_159997 chr8 105652109 105652460 + 0 NA intron (ENSMUSG00000005698.15, intron 2 of 9) protein_coding-intron (ENSMUSG00000005698.15, intron 2 of 11) 8503 ENSMUSG00000080021.5 ENSMUSG00000080021 ENSMUST00000116136 Gm5915 processed_pseudogene Interval_19636 chr10 106535890 106536384 + 0 NA intron (ENSMUSG00000053825.15, intron 2 of 31) protein_coding-intron (ENSMUSG00000053825.15, intron 2 of 31) 33400 ENSMUSG00000108029.1 ENSMUSG00000108029 ENSMUST00000204688 Olfr1556-ps1 unprocessed_pseudogene Interval_147597 chr7 68843669 68843887 + 0 NA intron (ENSMUSG00000109407.1, intron 2 of 2) lincRNA-intron (ENSMUSG00000109407.1, intron 2 of 2) 72230 ENSMUSG00000109407.1 ENSMUSG00000109407 ENSMUST00000208180 Gm34664 lincRNA Interval_90666 chr2 31770777 31771439 + 0 NA intron (ENSMUSG00000026842.16, intron 1 of 2) protein_coding-intron (ENSMUSG00000026842.16, intron 1 of 10) 39472 ENSMUSG00000043102.2 ENSMUSG00000043102 ENSMUST00000057407 Qrfp protein_coding Interval_50376 chr14 12208382 12208998 + 0 NA intron (ENSMUSG00000021745.14, intron 5 of 8) protein_coding-intron (ENSMUSG00000021745.14, intron 17 of 29) 54707 ENSMUSG00000021745.14 ENSMUSG00000021745 ENSMUST00000134290 Ptprg protein_coding Interval_80180 chr18 38056259 38056922 + 0 NA intron (ENSMUSG00000118056.1, intron 3 of 3) lincRNA-intron (ENSMUSG00000118056.1, intron 3 of 3) 33061 ENSMUSG00000118056.1 ENSMUSG00000118056 ENSMUST00000236681 Gm30093 lincRNA Interval_149107 chr7 93418261 93419594 + 0 NA Intergenic Intergenic 57249 ENSMUSG00000109315.1 ENSMUSG00000109315 ENSMUST00000207475 Gm45037 lincRNA Interval_111620 chr4 24698890 24699115 + 0 NA intron (ENSMUSG00000040387.16, intron 4 of 9) protein_coding-intron (ENSMUSG00000040387.16, intron 4 of 9) 44963 ENSMUSG00000040387.16 ENSMUSG00000040387 ENSMUST00000144062 Klhl32 protein_coding Interval_30910 chr11 97180576 97181492 + 0 NA intron (ENSMUSG00000001440.5, intron 4 of 21) protein_coding-intron (ENSMUSG00000001440.5, intron 4 of 21) -15634 ENSMUSG00000001440.5 ENSMUSG00000001440 ENSMUST00000153727 Kpnb1 protein_coding Interval_149115 chr7 93899126 93899670 + 0 NA Intergenic Intergenic -51544 ENSMUSG00000118493.1 ENSMUSG00000118493 ENSMUST00000238896 AC107736.1 processed_pseudogene Interval_116236 chr4 108950247 108950795 + 0 NA intron (ENSMUSG00000086483.1, intron 3 of 5) antisense-intron (ENSMUSG00000086483.1, intron 3 of 5) 11421 ENSMUSG00000003411.10 ENSMUSG00000003411 ENSMUST00000157062 Rab3b protein_coding Interval_110461 chr3 158560864 158562812 + 0 NA promoter-TSS (ENSMUSG00000028176.13) protein_coding-promoter-TSS (ENSMUSG00000028176.13) 296 ENSMUSG00000028176.13 ENSMUSG00000028176 ENSMUST00000198284 Lrrc7 protein_coding Interval_146042 chr7 43432872 43434253 + 0 NA intron (ENSMUSG00000093639.4, intron 4 of 5) protein_coding-intron (ENSMUSG00000118560.1, intron 2 of 4) 3474 ENSMUSG00000118560.1 ENSMUSG00000118560 ENSMUST00000004732 Lim2 protein_coding Interval_14973 chr10 41599024 41599236 + 0 NA intron (ENSMUSG00000075225.15, intron 2 of 20) protein_coding-intron (ENSMUSG00000075225.15, intron 1 of 12) 12189 ENSMUSG00000075225.15 ENSMUSG00000075225 ENSMUST00000190522 Ccdc162 protein_coding Interval_112586 chr4 43416007 43417096 + 0 NA TTS (ENSMUSG00000035969.15) protein_coding-TTS (ENSMUSG00000035969.15) 1855 ENSMUSG00000035969.15 ENSMUSG00000035969 ENSMUST00000123447 Rusc2 protein_coding Interval_9663 chr1 160842251 160844089 + 0 NA Intergenic Intergenic 4002 ENSMUSG00000103631.1 ENSMUSG00000103631 ENSMUST00000194822 Gm38060 lincRNA Interval_101559 chr3 5988642 5990180 + 0 NA Intergenic Intergenic 103816 ENSMUSG00000096130.1 ENSMUSG00000096130 ENSMUST00000179561 Gm25144 miRNA Interval_1716 chr1 32265331 32266161 + 0 NA intron (ENSMUSG00000026058.11, intron 2 of 2) protein_coding-intron (ENSMUSG00000026058.11, intron 2 of 8) -52507 ENSMUSG00000064688.1 ENSMUSG00000064688 ENSMUST00000082754 Gm25814 snRNA Interval_59892 chr15 60900619 60900850 + 0 NA intron (ENSMUSG00000022347.8, intron 1 of 1) protein_coding-intron (ENSMUSG00000022347.8, intron 1 of 1) -12240 ENSMUSG00000115231.1 ENSMUSG00000115231 ENSMUST00000228929 4930402D18Rik antisense Interval_145790 chr7 38297217 38297460 + 0 NA promoter-TSS (ENSMUSG00000101410.1) unprocessed_pseudogene-promoter-TSS (ENSMUSG00000101410.1) -353 ENSMUSG00000101410.1 ENSMUSG00000101410 ENSMUST00000186086 Gm28581 unprocessed_pseudogene Interval_126827 chr5 93205684 93207086 + 0 NA promoter-TSS (ENSMUSG00000029384.5) protein_coding-promoter-TSS (ENSMUSG00000029384.5) -148 ENSMUSG00000029384.5 ENSMUSG00000029384 ENSMUST00000201993 2010109A12Rik protein_coding Interval_145024 chr7 29483911 29484947 + 0 NA intron (ENSMUSG00000030583.16, intron 1 of 2) protein_coding-intron (ENSMUSG00000030583.16, intron 2 of 22) -40114 ENSMUSG00000074224.3 ENSMUSG00000074224 ENSMUST00000098602 4932431P20Rik transcribed_unitary_pseudogene Interval_150036 chr7 105262994 105263775 + 0 NA Intergenic Intergenic -9468 ENSMUSG00000073908.5 ENSMUSG00000073908 ENSMUST00000098154 Olfr687 transcribed_unprocessed_pseudogene Interval_119298 chr4 136724882 136725118 + 0 NA intron (ENSMUSG00000028664.14, intron 3 of 15) protein_coding-intron (ENSMUSG00000028664.14, intron 3 of 15) -30960 ENSMUSG00000028664.14 ENSMUSG00000028664 ENSMUST00000144573 Ephb2 protein_coding Interval_22574 chr11 11878840 11880183 + 0 NA intron (ENSMUSG00000020182.16, intron 2 of 14) protein_coding-intron (ENSMUSG00000020182.16, intron 2 of 14) 11388 ENSMUSG00000086391.1 ENSMUSG00000086391 ENSMUST00000151032 1700042O10Rik antisense Interval_127852 chr5 108254154 108254518 + 0 NA Intergenic Intergenic -22584 ENSMUSG00000029265.4 ENSMUSG00000029265 ENSMUST00000154862 Dr1 protein_coding Interval_151873 chr7 127236012 127236476 + 0 NA exon (ENSMUSG00000045598.10, exon 2 of 2) protein_coding-exon (ENSMUSG00000045598.10, exon 2 of 2) 2950 ENSMUSG00000045598.10 ENSMUSG00000045598 ENSMUST00000205367 Zfp553 protein_coding Interval_166542 chr9 60757619 60757801 + 0 NA intron (ENSMUSG00000095956.2, intron 2 of 3) lincRNA-intron (ENSMUSG00000095956.2, intron 2 of 3) 14590 ENSMUSG00000095956.2 ENSMUSG00000095956 ENSMUST00000178191 1700036A12Rik lincRNA Interval_61722 chr15 83583297 83583995 + 0 NA intron (ENSMUSG00000016757.11, intron 5 of 12) protein_coding-intron (ENSMUSG00000016757.11, intron 6 of 13) 11511 ENSMUSG00000016757.11 ENSMUSG00000016757 ENSMUST00000134334 Ttll12 protein_coding Interval_2897 chr1 48634582 48634773 + 0 NA Intergenic Intergenic 98413 ENSMUSG00000101721.1 ENSMUSG00000101721 ENSMUST00000189223 Gm8354 processed_pseudogene Interval_25259 chr11 45926522 45927464 + 0 NA Intergenic Intergenic 17942 ENSMUSG00000044847.13 ENSMUSG00000044847 ENSMUST00000062458 Lsm11 protein_coding Interval_83907 chr19 5495494 5498060 + 0 NA TTS (ENSMUSG00000056185.5) protein_coding-TTS (ENSMUSG00000056185.5) 6212 ENSMUSG00000056201.8 ENSMUSG00000056201 ENSMUST00000237122 Cfl1 protein_coding Interval_143852 chr7 16759300 16761215 + 0 NA Intergenic Intergenic 21719 ENSMUSG00000008036.11 ENSMUSG00000008036 ENSMUST00000141496 Ap2s1 protein_coding Interval_26656 chr11 59505148 59506928 + 0 NA promoter-TSS (ENSMUSG00000072893.12) processed_transcript-promoter-TSS (ENSMUSG00000072893.12) 353 ENSMUSG00000072893.12 ENSMUSG00000072893 ENSMUST00000130570 4933439C10Rik processed_transcript Interval_74476 chr17 51554601 51555048 + 0 NA Intergenic Intergenic -19966 ENSMUSG00000117181.1 ENSMUSG00000117181 ENSMUST00000233527 Gm31143 lincRNA Interval_28510 chr11 76410652 76411029 + 0 NA intron (ENSMUSG00000020843.15, intron 2 of 3) protein_coding-intron (ENSMUSG00000020843.15, intron 2 of 3) 3635 ENSMUSG00000020843.15 ENSMUSG00000020843 ENSMUST00000164102 Timm22 protein_coding Interval_45031 chr13 51623597 51624577 + 0 NA Intergenic Intergenic -21145 ENSMUSG00000062248.5 ENSMUSG00000062248 ENSMUST00000075853 Cks2 protein_coding Interval_63898 chr16 4419294 4420907 + 0 NA promoter-TSS (ENSMUSG00000005580.11) protein_coding-promoter-TSS (ENSMUSG00000005580.11) 398 ENSMUSG00000005580.11 ENSMUSG00000005580 ENSMUST00000005719 Adcy9 protein_coding Interval_34294 chr12 3172083 3172514 + 0 NA intron (ENSMUSG00000110250.1, intron 1 of 12) unprocessed_pseudogene-intron (ENSMUSG00000110250.1, intron 1 of 12) 424 ENSMUSG00000110250.1 ENSMUSG00000110250 ENSMUST00000210657 Gm9077 unprocessed_pseudogene Interval_164938 chr9 43249773 43250666 + 0 NA intron (ENSMUSG00000095385.3, intron 1 of 7) lincRNA-intron (ENSMUSG00000095385.3, intron 1 of 7) -15060 ENSMUSG00000095385.3 ENSMUSG00000095385 ENSMUST00000210037 D630033O11Rik lincRNA Interval_108307 chr3 123525547 123525755 + 0 NA TTS (ENSMUSG00000027977.15) protein_coding-TTS (ENSMUSG00000027977.15) -14977 ENSMUSG00000104670.1 ENSMUSG00000104670 ENSMUST00000196009 Gm9369 processed_pseudogene Interval_112739 chr4 44528975 44529356 + 0 NA exon (ENSMUSG00000014030.15, exon 10 of 10) protein_coding-exon (ENSMUSG00000014030.15, exon 10 of 10) 78403 ENSMUSG00000092761.1 ENSMUSG00000092761 ENSMUST00000175020 Mir5120 miRNA Interval_79695 chr18 34578285 34579191 + 0 NA exon (ENSMUSG00000035984.14, exon 2 of 6) protein_coding-exon (ENSMUSG00000035984.14, exon 2 of 6) 349 ENSMUSG00000035984.14 ENSMUSG00000035984 ENSMUST00000154342 Nme5 protein_coding Interval_132399 chr5 144707636 144708328 + 0 NA Intergenic Intergenic 15815 ENSMUSG00000082524.3 ENSMUSG00000082524 ENSMUST00000121256 Gm6272 processed_pseudogene Interval_26480 chr11 58084739 58085123 + 0 NA intron (ENSMUSG00000086962.4, intron 1 of 8) protein_coding-intron (ENSMUSG00000086962.4, intron 1 of 8) 8203 ENSMUSG00000086962.4 ENSMUSG00000086962 ENSMUST00000137124 Gm12248 protein_coding Interval_81816 chr18 64965148 64966250 + 0 NA intron (ENSMUSG00000024589.18, intron 1 of 29) protein_coding-intron (ENSMUSG00000024589.18, intron 1 of 29) 35476 ENSMUSG00000117895.1 ENSMUSG00000117895 ENSMUST00000237218 Gm50368 antisense Interval_156102 chr8 44588982 44589593 + 0 NA Intergenic Intergenic -12546 ENSMUSG00000088523.1 ENSMUSG00000088523 ENSMUST00000157898 Gm26089 rRNA Interval_152356 chr7 132286800 132287381 + 0 NA intron (ENSMUSG00000030930.14, intron 1 of 7) protein_coding-intron (ENSMUSG00000030930.14, intron 1 of 7) 26988 ENSMUSG00000109555.1 ENSMUSG00000109555 ENSMUST00000208817 Gm44891 TEC Interval_170915 chr9 112069023 112069617 + 0 NA intron (ENSMUSG00000032503.18, intron 17 of 18) protein_coding-intron (ENSMUSG00000032503.18, intron 17 of 18) 49391 ENSMUSG00000065441.2 ENSMUSG00000065441 ENSMUST00000083507 Mir128-2 miRNA Interval_113679 chr4 57514466 57514992 + 0 NA intron (ENSMUSG00000090053.9, intron 1 of 6) protein_coding-intron (ENSMUSG00000090053.9, intron 1 of 6) -53591 ENSMUSG00000090053.9 ENSMUSG00000090053 ENSMUST00000131201 Pakap protein_coding Interval_1756 chr1 33564960 33566364 + 0 NA intron (ENSMUSG00000026134.11, intron 7 of 13) protein_coding-intron (ENSMUSG00000026134.11, intron 7 of 13) 51170 ENSMUSG00000102714.1 ENSMUSG00000102714 ENSMUST00000192891 Gm37618 TEC Interval_3025 chr1 52302300 52303002 + 0 NA Intergenic Intergenic -13556 ENSMUSG00000099648.1 ENSMUSG00000099648 ENSMUST00000185256 Gm5975 processed_pseudogene Interval_18418 chr10 85648556 85649077 + 0 NA intron (ENSMUSG00000020042.15, intron 2 of 4) protein_coding-intron (ENSMUSG00000020042.15, intron 12 of 14) 3613 ENSMUSG00000020042.15 ENSMUSG00000020042 ENSMUST00000145433 Btbd11 protein_coding Interval_63127 chr15 99237703 99237946 + 0 NA promoter-TSS (ENSMUSG00000037579.7) protein_coding-promoter-TSS (ENSMUSG00000037579.7) -81 ENSMUSG00000037579.7 ENSMUSG00000037579 ENSMUST00000230552 Kcnh3 protein_coding Interval_143056 chr6 148955457 148957710 + 0 NA Intergenic Intergenic -10733 ENSMUSG00000080536.1 ENSMUSG00000080536 ENSMUST00000116886 Gm25539 snoRNA Interval_45347 chr13 54602361 54603768 + 0 NA intron (ENSMUSG00000047547.14, intron 2 of 3) protein_coding-intron (ENSMUSG00000047547.14, intron 2 of 5) 8228 ENSMUSG00000047547.14 ENSMUSG00000047547 ENSMUST00000146301 Cltb protein_coding Interval_41090 chr12 111113246 111114205 + 0 NA TTS (ENSMUSG00000037896.17) protein_coding-TTS (ENSMUSG00000037896.17) 22525 ENSMUSG00000113200.1 ENSMUSG00000113200 ENSMUST00000221105 Gm48632 TEC Interval_64349 chr16 10697303 10697700 + 0 NA intron (ENSMUSG00000068663.14, intron 21 of 22) protein_coding-intron (ENSMUSG00000068663.14, intron 22 of 23) -13962 ENSMUSG00000087384.1 ENSMUSG00000087384 ENSMUST00000126849 Gm15558 antisense Interval_56555 chr14 120329009 120329267 + 0 NA TTS (ENSMUSG00000022139.17) protein_coding-TTS (ENSMUSG00000022139.17) -50103 ENSMUSG00000022139.17 ENSMUSG00000022139 ENSMUST00000227153 Mbnl2 protein_coding Interval_132134 chr5 142885936 142887326 + 0 NA exon (ENSMUSG00000066640.11, exon 3 of 5) protein_coding-exon (ENSMUSG00000066640.11, exon 3 of 5) -8258 ENSMUSG00000097559.1 ENSMUSG00000097559 ENSMUST00000181842 D430018E03Rik sense_intronic Interval_61863 chr15 84738261 84738479 + 0 NA intron (ENSMUSG00000078954.9, intron 2 of 11) protein_coding-intron (ENSMUSG00000078954.9, intron 3 of 12) -18104 ENSMUSG00000116396.1 ENSMUSG00000116396 ENSMUST00000229841 Gm20556 lincRNA Interval_32495 chr11 107896604 107897096 + 0 NA intron (ENSMUSG00000040373.12, intron 1 of 5) protein_coding-intron (ENSMUSG00000040373.12, intron 1 of 5) 14512 ENSMUSG00000040373.12 ENSMUSG00000040373 ENSMUST00000039071 Cacng5 protein_coding Interval_140321 chr6 116468184 116468592 + 0 NA Intergenic Intergenic -4466 ENSMUSG00000107914.1 ENSMUSG00000107914 ENSMUST00000203072 Gm44076 processed_pseudogene Interval_70547 chr17 11900519 11901102 + 0 NA intron (ENSMUSG00000023826.16, intron 8 of 10) protein_coding-intron (ENSMUSG00000023826.16, intron 9 of 11) -168465 ENSMUSG00000104466.1 ENSMUSG00000104466 ENSMUST00000194203 Gm10513 TEC Interval_86612 chr19 42044989 42046064 + 0 NA promoter-TSS (ENSMUSG00000025176.14) protein_coding-promoter-TSS (ENSMUSG00000025176.14) -266 ENSMUSG00000025176.14 ENSMUSG00000025176 ENSMUST00000167381 Hoga1 protein_coding Interval_117195 chr4 120455782 120456150 + 0 NA intron (ENSMUSG00000000085.16, intron 4 of 4) protein_coding-intron (ENSMUSG00000000085.16, intron 4 of 16) 50585 ENSMUSG00000000085.16 ENSMUSG00000000085 ENSMUST00000133169 Scmh1 protein_coding Interval_67692 chr16 55985227 55986086 + 0 NA intron (ENSMUSG00000022601.11, intron 3 of 10) protein_coding-intron (ENSMUSG00000022601.11, intron 3 of 10) -11039 ENSMUSG00000102101.1 ENSMUSG00000102101 ENSMUST00000186480 Zbtb11os1 antisense Interval_111408 chr4 21186967 21187184 + 0 NA Intergenic Intergenic -83000 ENSMUSG00000088073.1 ENSMUSG00000088073 ENSMUST00000157448 Gm22817 ribozyme Interval_69045 chr16 90283169 90285125 + 0 NA exon (ENSMUSG00000022983.16, exon 1 of 20) protein_coding-exon (ENSMUSG00000022983.16, exon 1 of 20) 356 ENSMUSG00000022983.16 ENSMUSG00000022983 ENSMUST00000231776 Scaf4 protein_coding Interval_27703 chr11 69564269 69564722 + 0 NA promoter-TSS (ENSMUSG00000041346.11) protein_coding-promoter-TSS (ENSMUSG00000041346.11) -573 ENSMUSG00000041346.11 ENSMUSG00000041346 ENSMUST00000132548 Wrap53 protein_coding Interval_125175 chr5 65095686 65096559 + 0 NA Intergenic Intergenic -3990 ENSMUSG00000037913.12 ENSMUSG00000037913 ENSMUST00000203117 Tmem156 protein_coding Interval_19151 chr10 95156062 95157245 + 0 NA Intergenic Intergenic -3708 ENSMUSG00000112682.1 ENSMUSG00000112682 ENSMUST00000220149 Gm48874 TEC Interval_104846 chr3 75867781 75868241 + 0 NA Intergenic Intergenic -84113 ENSMUSG00000103024.1 ENSMUSG00000103024 ENSMUST00000193507 Gm37685 TEC Interval_105240 chr3 84133435 84134299 + 0 NA intron (ENSMUSG00000033752.7, intron 4 of 7) protein_coding-intron (ENSMUSG00000033752.7, intron 4 of 7) 21919 ENSMUSG00000033752.7 ENSMUSG00000033752 ENSMUST00000047368 Mnd1 protein_coding Interval_141427 chr6 128221568 128222182 + 0 NA Intergenic Intergenic -7861 ENSMUSG00000108280.1 ENSMUSG00000108280 ENSMUST00000203793 Gm8703 processed_pseudogene Interval_10390 chr1 170254748 170255866 + 0 NA TTS (ENSMUSG00000096964.1) transcribed_unprocessed_pseudogene-TTS (ENSMUSG00000096964.1) 273 ENSMUSG00000096964.1 ENSMUSG00000096964 ENSMUST00000180900 Gm6345 transcribed_unprocessed_pseudogene Interval_61792 chr15 84185905 84186767 + 0 NA TTS (ENSMUSG00000041653.5) protein_coding-TTS (ENSMUSG00000041653.5) 322 ENSMUSG00000041653.5 ENSMUSG00000041653 ENSMUST00000230926 Pnpla3 protein_coding Interval_170213 chr9 106236504 106236799 + 0 NA TTS (ENSMUSG00000032786.16) protein_coding-TTS (ENSMUSG00000032786.16) 11219 ENSMUSG00000032786.16 ENSMUSG00000032786 ENSMUST00000215222 Alas1 protein_coding Interval_18148 chr10 83021326 83021860 + 0 NA intron (ENSMUSG00000034612.7, intron 1 of 2) protein_coding-intron (ENSMUSG00000034612.7, intron 1 of 2) 10102 ENSMUSG00000112084.1 ENSMUSG00000112084 ENSMUST00000218071 Gm10773 TEC Interval_21930 chr11 5263194 5263521 + 0 NA Intergenic Intergenic -10728 ENSMUSG00000118486.1 ENSMUSG00000118486 ENSMUST00000238466 Gm30172 unitary_pseudogene Interval_56779 chr14 122046093 122046401 + 0 NA Intergenic Intergenic 11573 ENSMUSG00000071229.3 ENSMUSG00000071229 ENSMUST00000045976 Timm8a2 protein_coding Interval_174692 chrX 163234662 163234907 + 0 NA Intergenic Intergenic -25984 ENSMUSG00000083225.1 ENSMUSG00000083225 ENSMUST00000117773 Gm15215 processed_pseudogene Interval_70667 chr17 12915648 12917011 + 0 NA promoter-TSS (ENSMUSG00000057388.9) protein_coding-promoter-TSS (ENSMUSG00000057388.9) -260 ENSMUSG00000057388.9 ENSMUSG00000057388 ENSMUST00000162978 Mrpl18 protein_coding Interval_159638 chr8 95949797 95950017 + 0 NA Intergenic Intergenic 28378 ENSMUSG00000110506.1 ENSMUSG00000110506 ENSMUST00000212919 Gm8637 processed_pseudogene Interval_45406 chr13 54920389 54920781 + 0 NA Intergenic Intergenic 7350 ENSMUSG00000085896.2 ENSMUSG00000085896 ENSMUST00000154615 5330429C05Rik lincRNA Interval_60409 chr15 73570796 73571187 + 0 NA TTS (ENSMUSG00000036661.14) protein_coding-TTS (ENSMUSG00000036661.14) 17971 ENSMUSG00000079020.9 ENSMUSG00000079020 ENSMUST00000150409 Slc45a4 protein_coding Interval_159866 chr8 104442199 104443630 + 0 NA promoter-TSS (ENSMUSG00000035770.8) protein_coding-promoter-TSS (ENSMUSG00000035770.8) 643 ENSMUSG00000110630.1 ENSMUSG00000110630 ENSMUST00000211969 K230015D01Rik antisense Interval_174727 chrX 164196959 164197376 + 0 NA intron (ENSMUSG00000031377.11, intron 17 of 18) protein_coding-intron (ENSMUSG00000031377.11, intron 17 of 18) 34989 ENSMUSG00000015405.15 ENSMUSG00000015405 ENSMUST00000131543 Ace2 protein_coding Interval_80357 chr18 39972601 39972821 + 0 NA Intergenic Intergenic -43337 ENSMUSG00000118015.1 ENSMUSG00000118015 ENSMUST00000237624 Gm41708 lincRNA Interval_35061 chr12 16976073 16976627 + 0 NA intron (ENSMUSG00000020580.10, intron 4 of 5) protein_coding-intron (ENSMUSG00000020580.10, intron 30 of 32) 3269 ENSMUSG00000020580.10 ENSMUSG00000020580 ENSMUST00000221463 Rock2 protein_coding Interval_138098 chr6 85153891 85155877 + 0 NA promoter-TSS (ENSMUSG00000068303.6) transcribed_unprocessed_pseudogene-promoter-TSS (ENSMUSG00000068303.6) 2263 ENSMUSG00000068303.6 ENSMUSG00000068303 ENSMUST00000186281 Spr-ps1 transcribed_unprocessed_pseudogene Interval_11801 chr1 185517271 185517756 + 0 NA Intergenic Intergenic 30219 ENSMUSG00000102185.1 ENSMUSG00000102185 ENSMUST00000192616 5033404E19Rik transcribed_processed_pseudogene Interval_96838 chr2 128786038 128786256 + 0 NA intron (ENSMUSG00000014361.5, intron 7 of 10) protein_coding-intron (ENSMUSG00000014361.5, intron 15 of 18) 5771 ENSMUSG00000087785.1 ENSMUSG00000087785 ENSMUST00000157160 Gm23172 snoRNA Interval_32764 chr11 110397454 110399390 + 0 NA promoter-TSS (ENSMUSG00000020623.11) protein_coding-promoter-TSS (ENSMUSG00000020623.11) -60706 ENSMUSG00000018800.14 ENSMUSG00000018800 ENSMUST00000148984 Abca5 protein_coding Interval_90845 chr2 32931719 32932261 + 0 NA intron (ENSMUSG00000026792.16, intron 7 of 7) protein_coding-intron (ENSMUSG00000026792.16, intron 21 of 24) 6809 ENSMUSG00000026792.16 ENSMUSG00000026792 ENSMUST00000138015 Lrsam1 protein_coding Interval_88807 chr2 11327186 11327377 + 0 NA Intergenic Intergenic -5544 ENSMUSG00000102894.1 ENSMUSG00000102894 ENSMUST00000193871 Gm37851 TEC Interval_145201 chr7 30613401 30613909 + 0 NA promoter-TSS (ENSMUSG00000006313.5) protein_coding-promoter-TSS (ENSMUSG00000006313.5) -808 ENSMUSG00000006313.5 ENSMUSG00000006313 ENSMUST00000006476 Upk1a protein_coding Interval_9908 chr1 164014141 164014757 + 0 NA Intergenic Intergenic -17511 ENSMUSG00000103960.1 ENSMUSG00000103960 ENSMUST00000195691 Gm37119 processed_pseudogene Interval_143863 chr7 16815486 16817122 + 0 NA promoter-TSS (ENSMUSG00000030374.15) protein_coding-promoter-TSS (ENSMUSG00000030374.15) -783 ENSMUSG00000048920.8 ENSMUSG00000048920 ENSMUST00000205368 Fkrp protein_coding Interval_131243 chr5 135965563 135965853 + 0 NA TTS (ENSMUSG00000029699.13) protein_coding-TTS (ENSMUSG00000029699.13) 2212 ENSMUSG00000029699.13 ENSMUSG00000029699 ENSMUST00000154181 Ssc4d protein_coding Interval_169936 chr9 103076788 103077449 + 0 NA intron (ENSMUSG00000032548.14, intron 9 of 13) protein_coding-intron (ENSMUSG00000032548.14, intron 10 of 13) 8408 ENSMUSG00000110765.1 ENSMUSG00000110765 ENSMUST00000216778 Gm47468 antisense Interval_2732 chr1 43977666 43977966 + 0 NA TTS (ENSMUSG00000041763.14) protein_coding-TTS (ENSMUSG00000041763.14) 39652 ENSMUSG00000047343.4 ENSMUSG00000047343 ENSMUST00000159881 Mettl21c protein_coding Interval_164242 chr9 34108654 34108916 + 0 NA Intergenic Intergenic 66416 ENSMUSG00000098758.1 ENSMUSG00000098758 ENSMUST00000184229 7630403G23Rik lincRNA Interval_151605 chr7 125145620 125146269 + 0 NA Intergenic Intergenic 70593 ENSMUSG00000108799.1 ENSMUSG00000108799 ENSMUST00000206310 Glud-ps processed_pseudogene Interval_169886 chr9 102747327 102748289 + 0 NA intron (ENSMUSG00000093812.1, intron 2 of 3) lincRNA-intron (ENSMUSG00000093812.1, intron 2 of 3) 8160 ENSMUSG00000093812.1 ENSMUSG00000093812 ENSMUST00000178539 Gm5627 lincRNA Interval_139469 chr6 100380049 100380255 + 0 NA Intergenic Intergenic -93404 ENSMUSG00000072872.3 ENSMUSG00000072872 ENSMUST00000205164 Rybp protein_coding Interval_145123 chr7 30181470 30182176 + 0 NA exon (ENSMUSG00000066647.8, exon 3 of 3) transcribed_unprocessed_pseudogene-exon (ENSMUSG00000066647.8, exon 3 of 3) -2371 ENSMUSG00000074218.3 ENSMUSG00000074218 ENSMUST00000208441 Cox7a1 protein_coding Interval_130710 chr5 129929619 129930976 + 0 NA Intergenic Intergenic -15283 ENSMUSG00000107118.1 ENSMUSG00000107118 ENSMUST00000201618 Gm42986 TEC Interval_116306 chr4 109568914 109569191 + 0 NA promoter-TSS (ENSMUSG00000087641.1) processed_transcript-promoter-TSS (ENSMUSG00000087641.1) -162 ENSMUSG00000087641.1 ENSMUSG00000087641 ENSMUST00000125237 Gm12811 processed_transcript Interval_85603 chr19 29020884 29021304 + 0 NA TTS (ENSMUSG00000024780.7) protein_coding-TTS (ENSMUSG00000024780.7) 6150 ENSMUSG00000024782.7 ENSMUSG00000024782 ENSMUST00000125587 Ak3 protein_coding Interval_121496 chr4 156188332 156189721 + 0 NA intron (ENSMUSG00000041936.18, intron 2 of 35) protein_coding-intron (ENSMUSG00000041936.18, intron 2 of 35) -2919 ENSMUSG00000041936.18 ENSMUSG00000041936 ENSMUST00000144749 Agrn protein_coding Interval_102483 chr3 27122976 27123221 + 0 NA promoter-TSS (ENSMUSG00000027699.19) protein_coding-promoter-TSS (ENSMUSG00000027699.19) 14116 ENSMUSG00000087742.1 ENSMUSG00000087742 ENSMUST00000157117 Gm25152 snoRNA Interval_67860 chr16 58213059 58213398 + 0 NA Intergenic Intergenic -24876 ENSMUSG00000116717.1 ENSMUSG00000116717 ENSMUST00000231686 Gm49574 lincRNA Interval_100328 chr2 168425632 168425937 + 0 NA Intergenic Intergenic -7210 ENSMUSG00000082239.1 ENSMUSG00000082239 ENSMUST00000119539 Gm14234 processed_pseudogene Interval_58914 chr15 39942941 39944557 + 0 NA promoter-TSS (ENSMUSG00000022305.13) protein_coding-promoter-TSS (ENSMUSG00000022305.13) -59 ENSMUSG00000022305.13 ENSMUSG00000022305 ENSMUST00000146714 Lrp12 protein_coding Interval_137820 chr6 82744192 82745305 + 0 NA intron (ENSMUSG00000000628.10, intron 4 of 17) protein_coding-intron (ENSMUSG00000000628.10, intron 4 of 17) -19534 ENSMUSG00000090293.1 ENSMUSG00000090293 ENSMUST00000168990 Gm17034 antisense Interval_5902 chr1 93080937 93081312 + 0 NA intron (ENSMUSG00000014602.15, intron 2 of 48) protein_coding-intron (ENSMUSG00000014602.15, intron 1 of 46) 42979 ENSMUSG00000101378.1 ENSMUSG00000101378 ENSMUST00000191586 Gm28086 lincRNA Interval_91573 chr2 43673086 43674210 + 0 NA intron (ENSMUSG00000026866.16, intron 2 of 3) protein_coding-intron (ENSMUSG00000026866.16, intron 12 of 13) 2718 ENSMUSG00000026866.16 ENSMUSG00000026866 ENSMUST00000148855 Kynu protein_coding Interval_86235 chr19 38003734 38004709 + 0 NA intron (ENSMUSG00000048612.16, intron 3 of 9) protein_coding-intron (ENSMUSG00000048612.16, intron 3 of 52) 39178 ENSMUSG00000048612.16 ENSMUSG00000048612 ENSMUST00000226084 Myof protein_coding Interval_95027 chr2 103290936 103291150 + 0 NA promoter-TSS (ENSMUSG00000012350.15) protein_coding-promoter-TSS (ENSMUSG00000012350.15) 11877 ENSMUSG00000012350.15 ENSMUSG00000012350 ENSMUST00000128546 Ehf protein_coding Interval_10297 chr1 168265786 168266259 + 0 NA intron (ENSMUSG00000052534.15, intron 2 of 7) protein_coding-intron (ENSMUSG00000052534.15, intron 2 of 6) 71649 ENSMUSG00000103780.1 ENSMUSG00000103780 ENSMUST00000192272 Gm37524 TEC Interval_168943 chr9 89401563 89402071 + 0 NA Intergenic Intergenic 69001 ENSMUSG00000066442.17 ENSMUSG00000066442 ENSMUST00000209568 Mthfs protein_coding Interval_35090 chr12 17242018 17242303 + 0 NA Intergenic Intergenic 8548 ENSMUSG00000113368.1 ENSMUSG00000113368 ENSMUST00000223362 Gm10054 processed_pseudogene Interval_22755 chr11 14782294 14782509 + 0 NA Intergenic Intergenic 2374 ENSMUSG00000082156.1 ENSMUSG00000082156 ENSMUST00000117791 Gm12008 processed_pseudogene Interval_159060 chr8 89180383 89181463 + 0 NA Intergenic Intergenic 6637 ENSMUSG00000069962.3 ENSMUSG00000069962 ENSMUST00000093326 Gm5356 processed_pseudogene Interval_142775 chr6 145550090 145550278 + 0 NA intron (ENSMUSG00000054966.13, intron 1 of 10) protein_coding-intron (ENSMUSG00000054966.13, intron 1 of 1) -65573 ENSMUSG00000067338.6 ENSMUSG00000067338 ENSMUST00000087445 Tuba3b protein_coding Interval_128883 chr5 115868641 115869733 + 0 NA promoter-TSS (ENSMUSG00000106869.1) TEC-promoter-TSS (ENSMUSG00000106869.1) -957 ENSMUSG00000106869.1 ENSMUSG00000106869 ENSMUST00000201056 Gm42473 TEC Interval_114014 chr4 62470430 62471058 + 0 NA exon (ENSMUSG00000028391.16, exon 1 of 11) protein_coding-exon (ENSMUSG00000028391.16, exon 1 of 11) 152 ENSMUSG00000028391.16 ENSMUSG00000028391 ENSMUST00000135811 Wdr31 protein_coding Interval_1875 chr1 34245238 34246099 + 0 NA intron (ENSMUSG00000026131.20, intron 3 of 22) protein_coding-intron (ENSMUSG00000026131.20, intron 59 of 97) 25460 ENSMUSG00000103001.1 ENSMUSG00000103001 ENSMUST00000194920 A930005N03Rik TEC Interval_126184 chr5 81646342 81647048 + 0 NA exon (ENSMUSG00000037605.16, exon 8 of 25) protein_coding-exon (ENSMUSG00000037605.16, exon 8 of 25) -89232 ENSMUSG00000106611.1 ENSMUSG00000106611 ENSMUST00000104721 Gm22048 miRNA Interval_33453 chr11 116623697 116624835 + 0 NA promoter-TSS (ENSMUSG00000020806.15) protein_coding-promoter-TSS (ENSMUSG00000020806.15) -21671 ENSMUSG00000020806.15 ENSMUSG00000020806 ENSMUST00000126819 Rhbdf2 protein_coding Interval_29295 chr11 82750965 82753289 + 0 NA intron (ENSMUSG00000020698.11, intron 5 of 13) protein_coding-intron (ENSMUSG00000020698.11, intron 5 of 13) -5922 ENSMUSG00000081828.1 ENSMUSG00000081828 ENSMUST00000120047 Gm11420 processed_pseudogene Interval_164431 chr9 36976523 36977455 + 0 NA intron (ENSMUSG00000035934.16, intron 2 of 4) protein_coding-intron (ENSMUSG00000035934.16, intron 3 of 12) -38769 ENSMUSG00000093721.1 ENSMUSG00000093721 ENSMUST00000176020 Gm3896 antisense Interval_4050 chr1 66846702 66848092 + 0 NA intron (ENSMUSG00000026003.5, intron 5 of 5) protein_coding-intron (ENSMUSG00000026003.5, intron 5 of 10) 2205 ENSMUSG00000082769.3 ENSMUSG00000082769 ENSMUST00000121857 Gm15793 processed_pseudogene Interval_116393 chr4 111414427 111415862 + 0 NA promoter-TSS (ENSMUSG00000028545.13) protein_coding-promoter-TSS (ENSMUSG00000028545.13) 12789 ENSMUSG00000084673.1 ENSMUSG00000084673 ENSMUST00000122724 n-R5s191 rRNA Interval_10734 chr1 173779200 173779427 + 0 NA intron (ENSMUSG00000090222.2, intron 6 of 7) unprocessed_pseudogene-intron (ENSMUSG00000090222.2, intron 6 of 7) -12370 ENSMUSG00000073489.6 ENSMUSG00000073489 ENSMUST00000192414 Ifi204 protein_coding Interval_88881 chr2 12002012 12003045 + 0 NA Intergenic Intergenic 81464 ENSMUSG00000080801.2 ENSMUSG00000080801 ENSMUST00000120962 Gm13310 processed_pseudogene Interval_34300 chr12 3234897 3236840 + 0 NA promoter-TSS (ENSMUSG00000079179.9) antisense-promoter-TSS (ENSMUSG00000079179.9) -47 ENSMUSG00000079179.9 ENSMUSG00000079179 ENSMUST00000049684 Rab10os antisense Interval_169929 chr9 103024097 103024381 + 0 NA intron (ENSMUSG00000032548.14, intron 1 of 13) protein_coding-intron (ENSMUSG00000032548.14, intron 1 of 13) -1773 ENSMUSG00000077438.1 ENSMUSG00000077438 ENSMUST00000104250 Gm22595 snoRNA Interval_89682 chr2 24521432 24522285 + 0 NA Intergenic Intergenic 27790 ENSMUSG00000082307.3 ENSMUSG00000082307 ENSMUST00000119097 Gm13418 processed_pseudogene Interval_131531 chr5 137769778 137771436 + 0 NA Intergenic Intergenic -8830 ENSMUSG00000029725.10 ENSMUSG00000029725 ENSMUST00000152298 Ppp1r35 protein_coding Interval_134815 chr6 31803162 31804330 + 0 NA intron (ENSMUSG00000087379.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000087379.1, intron 1 of 2) 17071 ENSMUSG00000087379.1 ENSMUSG00000087379 ENSMUST00000153328 Gm13849 lincRNA Interval_90754 chr2 32304143 32304997 + 0 NA intron (ENSMUSG00000002546.17, intron 19 of 26) protein_coding-intron (ENSMUSG00000002546.17, intron 17 of 24) -13695 ENSMUSG00000092765.3 ENSMUSG00000092765 ENSMUST00000175024 Gm23363 miRNA Interval_64738 chr16 14675801 14676064 + 0 NA Intergenic Intergenic -29920 ENSMUSG00000022676.7 ENSMUSG00000022676 ENSMUST00000023356 Snai2 protein_coding Interval_117134 chr4 119903177 119903516 + 0 NA intron (ENSMUSG00000028634.17, intron 1 of 1) protein_coding-intron (ENSMUSG00000028634.17, intron 1 of 8) -129420 ENSMUSG00000028634.17 ENSMUSG00000028634 ENSMUST00000166542 Hivep3 protein_coding Interval_36323 chr12 41217569 41217786 + 0 NA intron (ENSMUSG00000056899.10, intron 3 of 5) protein_coding-intron (ENSMUSG00000056899.10, intron 4 of 6) 130413 ENSMUSG00000113086.1 ENSMUSG00000113086 ENSMUST00000223331 Gm47376 antisense Interval_151938 chr7 127663582 127663812 + 0 NA exon (ENSMUSG00000030814.17, exon 5 of 5) protein_coding-exon (ENSMUSG00000030814.17, exon 5 of 5) -5463 ENSMUSG00000108766.1 ENSMUSG00000108766 ENSMUST00000206375 Gm44760 TEC Interval_61699 chr15 83481239 83482522 + 0 NA Intergenic Intergenic 28913 ENSMUSG00000022442.16 ENSMUSG00000022442 ENSMUST00000154401 Ttll1 protein_coding Interval_135973 chr6 49186067 49187928 + 0 NA intron (ENSMUSG00000029814.10, intron 2 of 3) protein_coding-intron (ENSMUSG00000029814.10, intron 2 of 14) 14238 ENSMUSG00000107727.1 ENSMUSG00000107727 ENSMUST00000203553 Gm18010 processed_pseudogene Interval_119916 chr4 140904916 140906731 + 0 NA promoter-TSS (ENSMUSG00000028927.6) protein_coding-promoter-TSS (ENSMUSG00000028927.6) -12861 ENSMUSG00000064443.1 ENSMUSG00000064443 ENSMUST00000082509 Gm26226 snRNA Interval_82206 chr18 69068038 69070048 + 0 NA Intergenic Intergenic -46770 ENSMUSG00000098366.1 ENSMUSG00000098366 ENSMUST00000184434 Mir145b miRNA Interval_108103 chr3 121517105 121517995 + 0 NA intron (ENSMUSG00000039865.8, intron 5 of 14) protein_coding-intron (ENSMUSG00000039865.8, intron 5 of 14) 9557 ENSMUSG00000039865.8 ENSMUSG00000039865 ENSMUST00000199422 Slc44a3 protein_coding Interval_152036 chr7 128474262 128475684 + 0 NA exon (ENSMUSG00000108668.1, exon 1 of 1) processed_transcript-exon (ENSMUSG00000108668.1, exon 1 of 1) 3165 ENSMUSG00000093125.1 ENSMUSG00000093125 ENSMUST00000175384 Gm24365 miRNA Interval_90443 chr2 30469721 30470749 + 0 NA Intergenic Intergenic 3984 ENSMUSG00000089762.3 ENSMUSG00000089762 ENSMUST00000065134 Ier5l protein_coding Interval_131044 chr5 134739951 134741394 + 0 NA intron (ENSMUSG00000029675.12, intron 1 of 23) protein_coding-intron (ENSMUSG00000029675.12, intron 1 of 36) -6370 ENSMUSG00000107318.1 ENSMUSG00000107318 ENSMUST00000200700 Gm30003 antisense Interval_90682 chr2 31865329 31866178 + 0 NA Intergenic Intergenic -19748 ENSMUSG00000026841.7 ENSMUSG00000026841 ENSMUST00000028188 Fibcd1 protein_coding Interval_161586 chr8 121392986 121393597 + 0 NA intron (ENSMUSG00000092329.1, intron 1 of 15) protein_coding-intron (ENSMUSG00000092329.1, intron 1 of 15) -27947 ENSMUSG00000097783.2 ENSMUSG00000097783 ENSMUST00000180597 Gm26747 lincRNA Interval_67536 chr16 50428940 50430287 + 0 NA intron (ENSMUSG00000022641.15, intron 1 of 1) protein_coding-intron (ENSMUSG00000022641.15, intron 1 of 15) 2696 ENSMUSG00000022641.15 ENSMUSG00000022641 ENSMUST00000130210 Bbx protein_coding Interval_13430 chr10 18185462 18186119 + 0 NA intron (ENSMUSG00000071392.6, intron 2 of 20) protein_coding-intron (ENSMUSG00000071392.6, intron 3 of 20) 30545 ENSMUSG00000059554.12 ENSMUSG00000059554 ENSMUST00000052648 Ccdc28a protein_coding Interval_109322 chr3 138905775 138907120 + 0 NA exon (ENSMUSG00000028152.10, exon 8 of 8) protein_coding-exon (ENSMUSG00000028152.10, exon 8 of 8) 71634 ENSMUSG00000104724.1 ENSMUSG00000104724 ENSMUST00000198292 Gm43162 TEC Interval_76770 chr17 83924042 83924813 + 0 NA Intergenic Intergenic 6490 ENSMUSG00000117442.1 ENSMUSG00000117442 ENSMUST00000234364 1810073O08Rik lincRNA Interval_3757 chr1 62832134 62832789 + 0 NA promoter-TSS (ENSMUSG00000100426.1) lincRNA-promoter-TSS (ENSMUSG00000100426.1) -91 ENSMUSG00000100426.1 ENSMUSG00000100426 ENSMUST00000189802 Gm4208 lincRNA Interval_110980 chr4 11006529 11008542 + 0 NA exon (ENSMUSG00000049969.3, exon 1 of 2) protein_coding-exon (ENSMUSG00000049969.3, exon 1 of 2) 392 ENSMUSG00000049969.3 ENSMUSG00000049969 ENSMUST00000137891 Plekhf2 protein_coding Interval_42297 chr13 11902386 11903384 + 0 NA intron (ENSMUSG00000021313.16, intron 3 of 104) protein_coding-intron (ENSMUSG00000021313.16, intron 4 of 104) -36673 ENSMUSG00000098110.1 ENSMUSG00000098110 ENSMUST00000182176 Gm26956 processed_pseudogene Interval_76217 chr17 77828709 77829842 + 0 NA Intergenic Intergenic -141926 ENSMUSG00000117553.1 ENSMUSG00000117553 ENSMUST00000234795 Gm4711 processed_pseudogene Interval_56141 chr14 106737194 106737431 + 0 NA Intergenic Intergenic -28718 ENSMUSG00000077224.1 ENSMUSG00000077224 ENSMUST00000104036 Gm23437 snoRNA Interval_20769 chr10 120869220 120869810 + 0 NA intron (ENSMUSG00000051236.13, intron 2 of 6) protein_coding-intron (ENSMUSG00000051236.13, intron 2 of 6) 11886 ENSMUSG00000087480.1 ENSMUSG00000087480 ENSMUST00000127564 Gm15910 antisense Interval_34907 chr12 13223792 13224019 + 0 NA intron (ENSMUSG00000037149.10, intron 21 of 25) protein_coding-intron (ENSMUSG00000037149.10, intron 21 of 25) 25258 ENSMUSG00000037149.10 ENSMUSG00000037149 ENSMUST00000221623 Ddx1 protein_coding Interval_144088 chr7 19375361 19375916 + 0 NA intron (ENSMUSG00000040734.14, intron 10 of 12) protein_coding-intron (ENSMUSG00000040734.14, intron 10 of 12) -11005 ENSMUSG00000076315.2 ENSMUSG00000076315 ENSMUST00000102360 Mir343 miRNA Interval_169142 chr9 94216556 94217433 + 0 NA Intergenic Intergenic -67502 ENSMUSG00000064889.1 ENSMUSG00000064889 ENSMUST00000082955 Gm24200 snRNA Interval_166208 chr9 57502892 57504805 + 0 NA promoter-TSS (ENSMUSG00000062309.8) protein_coding-promoter-TSS (ENSMUSG00000062309.8) -178 ENSMUSG00000062309.8 ENSMUSG00000062309 ENSMUST00000080514 Rpp25 protein_coding Interval_174393 chrX 151116598 151117667 + 0 NA Intergenic Intergenic -20609 ENSMUSG00000025264.12 ENSMUSG00000025264 ENSMUST00000166689 Tsr2 protein_coding Interval_26156 chr11 54786898 54788236 + 0 NA promoter-TSS (ENSMUSG00000052298.12) protein_coding-promoter-TSS (ENSMUSG00000052298.12) 79 ENSMUSG00000052298.12 ENSMUSG00000052298 ENSMUST00000123424 Cdc42se2 protein_coding Interval_81249 chr18 56751667 56752560 + 0 NA intron (ENSMUSG00000024590.8, intron 10 of 10) protein_coding-intron (ENSMUSG00000024590.8, intron 10 of 10) -17604 ENSMUSG00000087597.1 ENSMUSG00000087597 ENSMUST00000128240 Gm15345 antisense Interval_162538 chr9 4020142 4021138 + 0 NA Intergenic Intergenic -193282 ENSMUSG00000110691.1 ENSMUSG00000110691 ENSMUST00000211927 Gm5363 processed_pseudogene Interval_155366 chr8 32556096 32556415 + 0 NA intron (ENSMUSG00000062991.9, intron 1 of 12) protein_coding-intron (ENSMUSG00000062991.9, intron 1 of 8) 370126 ENSMUSG00000089370.1 ENSMUSG00000089370 ENSMUST00000158745 Gm22140 snRNA Interval_170663 chr9 109954646 109955597 + 0 NA intron (ENSMUSG00000032479.15, intron 1 of 3) protein_coding-intron (ENSMUSG00000032479.15, intron 1 of 18) -15312 ENSMUSG00000106208.1 ENSMUSG00000106208 ENSMUST00000200117 Gm4734 processed_pseudogene Interval_29816 chr11 87021676 87021847 + 0 NA Intergenic Intergenic -24498 ENSMUSG00000088816.1 ENSMUSG00000088816 ENSMUST00000158191 Gm22387 scaRNA Interval_61513 chr15 82079843 82080394 + 0 NA exon (ENSMUSG00000068117.10, exon 6 of 31) protein_coding-exon (ENSMUSG00000068117.10, exon 6 of 31) 10122 ENSMUSG00000068117.10 ENSMUSG00000068117 ENSMUST00000186125 Mei1 protein_coding Interval_7333 chr1 129272747 129274586 + 0 NA intron (ENSMUSG00000042581.14, intron 1 of 1) protein_coding-intron (ENSMUSG00000042581.14, intron 1 of 15) -9441 ENSMUSG00000103742.1 ENSMUSG00000103742 ENSMUST00000195110 Gm38240 TEC Interval_54246 chr14 66851709 66851923 + 0 NA intron (ENSMUSG00000022048.8, intron 3 of 13) protein_coding-intron (ENSMUSG00000022048.8, intron 3 of 13) 16872 ENSMUSG00000022048.8 ENSMUSG00000022048 ENSMUST00000022629 Dpysl2 protein_coding Interval_39691 chr12 92570541 92570881 + 0 NA Intergenic Intergenic -96750 ENSMUSG00000113499.1 ENSMUSG00000113499 ENSMUST00000223493 Gm18500 processed_pseudogene Interval_58433 chr15 34491304 34491645 + 0 NA intron (ENSMUSG00000022323.11, intron 1 of 4) protein_coding-intron (ENSMUSG00000022323.11, intron 1 of 5) 3697 ENSMUSG00000022323.11 ENSMUSG00000022323 ENSMUST00000129426 Rida protein_coding Interval_31596 chr11 101604046 101605688 + 0 NA promoter-TSS (ENSMUSG00000065820.1) snRNA-promoter-TSS (ENSMUSG00000065820.1) 17 ENSMUSG00000065820.1 ENSMUSG00000065820 ENSMUST00000083886 Gm26316 snRNA Interval_150289 chr7 109345910 109346193 + 0 NA intron (ENSMUSG00000031027.15, intron 1 of 12) protein_coding-intron (ENSMUSG00000031027.15, intron 1 of 12) 42824 ENSMUSG00000081370.1 ENSMUSG00000081370 ENSMUST00000120160 Gm9105 processed_pseudogene Interval_116640 chr4 116227163 116227737 + 0 NA intron (ENSMUSG00000028698.13, intron 2 of 3) protein_coding-intron (ENSMUSG00000028698.13, intron 1 of 9) 5832 ENSMUSG00000028698.13 ENSMUSG00000028698 ENSMUST00000106490 Pik3r3 protein_coding Interval_104371 chr3 64321637 64322806 + 0 NA Intergenic Intergenic -3657 ENSMUSG00000088735.1 ENSMUSG00000088735 ENSMUST00000158110 Gm23897 snoRNA Interval_32231 chr11 106338097 106338806 + 0 NA intron (ENSMUSG00000001027.7, intron 11 of 23) protein_coding-intron (ENSMUSG00000001027.7, intron 11 of 23) 14837 ENSMUSG00000001027.7 ENSMUSG00000001027 ENSMUST00000174877 Scn4a protein_coding Interval_73153 chr17 35126227 35127302 + 0 NA promoter-TSS (ENSMUSG00000092241.1) antisense-promoter-TSS (ENSMUSG00000092241.1) -324 ENSMUSG00000092241.1 ENSMUSG00000092241 ENSMUST00000173576 Gm20522 antisense Interval_165236 chr9 45616232 45616510 + 0 NA intron (ENSMUSG00000032087.11, intron 3 of 32) protein_coding-intron (ENSMUSG00000032087.11, intron 3 of 32) 18441 ENSMUSG00000096202.1 ENSMUSG00000096202 ENSMUST00000179911 Gm22069 snRNA Interval_112105 chr4 34723299 34723483 + 0 NA TTS (ENSMUSG00000028294.15) protein_coding-TTS (ENSMUSG00000028294.15) 6804 ENSMUSG00000028294.15 ENSMUSG00000028294 ENSMUST00000160209 Cfap206 protein_coding Interval_26879 chr11 61243705 61244048 + 0 NA TTS (ENSMUSG00000010025.19) protein_coding-TTS (ENSMUSG00000010025.19) 7134 ENSMUSG00000010025.19 ENSMUSG00000010025 ENSMUST00000149298 Aldh3a2 protein_coding Interval_93059 chr2 69874497 69875556 + 0 NA promoter-TSS (ENSMUSG00000051730.15) protein_coding-promoter-TSS (ENSMUSG00000051730.15) -2824 ENSMUSG00000089902.1 ENSMUSG00000089902 ENSMUST00000149283 Gm13625 processed_transcript Interval_105029 chr3 79900852 79901918 + 0 NA intron (ENSMUSG00000027955.16, intron 2 of 4) protein_coding-intron (ENSMUSG00000027955.16, intron 1 of 3) -14579 ENSMUSG00000102191.1 ENSMUSG00000102191 ENSMUST00000195082 Gm36569 antisense Interval_87014 chr19 45552173 45552612 + 0 NA exon (ENSMUSG00000025218.6, exon 9 of 9) protein_coding-exon (ENSMUSG00000025218.6, exon 9 of 9) 8139 ENSMUSG00000025218.6 ENSMUSG00000025218 ENSMUST00000026239 Poll protein_coding Interval_90720 chr2 32100935 32101367 + 0 NA intron (ENSMUSG00000051373.5, intron 1 of 1) protein_coding-intron (ENSMUSG00000051373.5, intron 1 of 1) 4996 ENSMUSG00000051373.5 ENSMUSG00000051373 ENSMUST00000146502 Plpp7 protein_coding Interval_37363 chr12 65495304 65495526 + 0 NA Intergenic Intergenic -34837 ENSMUSG00000088441.1 ENSMUSG00000088441 ENSMUST00000157816 Gm25599 snRNA Interval_169205 chr9 95496868 95497067 + 0 NA intron (ENSMUSG00000032407.14, intron 1 of 2) protein_coding-intron (ENSMUSG00000032407.14, intron 2 of 26) 14918 ENSMUSG00000032407.14 ENSMUSG00000032407 ENSMUST00000188017 U2surp protein_coding Interval_76478 chr17 80468232 80469212 + 0 NA intron (ENSMUSG00000024241.7, intron 1 of 19) protein_coding-intron (ENSMUSG00000024241.7, intron 1 of 21) 11731 ENSMUSG00000024241.7 ENSMUSG00000024241 ENSMUST00000234841 Sos1 protein_coding Interval_144636 chr7 27271656 27271922 + 0 NA TTS (ENSMUSG00000083622.1) processed_pseudogene-TTS (ENSMUSG00000083622.1) 603 ENSMUSG00000083622.1 ENSMUSG00000083622 ENSMUST00000122093 Gm15570 processed_pseudogene Interval_52815 chr14 50844010 50845111 + 0 NA exon (ENSMUSG00000006281.8, exon 24 of 55) protein_coding-exon (ENSMUSG00000006281.8, exon 24 of 55) -14489 ENSMUSG00000006281.8 ENSMUSG00000006281 ENSMUST00000226789 Tep1 protein_coding Interval_116887 chr4 117985544 117985792 + 0 NA intron (ENSMUSG00000086554.1, intron 1 of 2) protein_coding-intron (ENSMUSG00000028538.12, intron 5 of 11) 10632 ENSMUSG00000086554.1 ENSMUSG00000086554 ENSMUST00000146982 9530034E10Rik antisense Interval_129361 chr5 119523368 119524614 + 0 NA intron (ENSMUSG00000106938.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000106938.1, intron 1 of 2) 3963 ENSMUSG00000106938.1 ENSMUSG00000106938 ENSMUST00000201435 Gm31314 lincRNA Interval_37356 chr12 65428072 65429156 + 0 NA Intergenic Intergenic -22644 ENSMUSG00000077590.1 ENSMUSG00000077590 ENSMUST00000104402 Gm26015 snoRNA Interval_129359 chr5 119486046 119486623 + 0 NA Intergenic Intergenic 41620 ENSMUSG00000106938.1 ENSMUSG00000106938 ENSMUST00000201435 Gm31314 lincRNA Interval_105120 chr3 81835435 81836668 + 0 NA Intergenic Intergenic 34026 ENSMUSG00000103695.1 ENSMUSG00000103695 ENSMUST00000193672 A830029E22Rik lincRNA Interval_2903 chr1 48839890 48840399 + 0 NA Intergenic Intergenic -41569 ENSMUSG00000097883.1 ENSMUSG00000097883 ENSMUST00000181115 Gm8357 processed_pseudogene Interval_96750 chr2 127742009 127742698 + 0 NA intron (ENSMUSG00000027378.16, intron 2 of 2) protein_coding-intron (ENSMUSG00000027378.16, intron 19 of 19) 11717 ENSMUSG00000027378.16 ENSMUSG00000027378 ENSMUST00000148033 Nphp1 protein_coding Interval_44014 chr13 39526656 39527128 + 0 NA Intergenic Intergenic 6211 ENSMUSG00000114221.1 ENSMUSG00000114221 ENSMUST00000224895 Gm47351 lincRNA Interval_130110 chr5 124341734 124342502 + 0 NA TTS (ENSMUSG00000047635.6) protein_coding-TTS (ENSMUSG00000047635.6) 14029 ENSMUSG00000047635.6 ENSMUSG00000047635 ENSMUST00000077376 2810006K23Rik protein_coding Interval_63346 chr15 100468436 100469517 + 0 NA promoter-TSS (ENSMUSG00000037353.9) protein_coding-promoter-TSS (ENSMUSG00000037353.9) -285 ENSMUSG00000097827.1 ENSMUSG00000097827 ENSMUST00000180953 5330439K02Rik bidirectional_promoter_lncRNA Interval_115094 chr4 89588072 89588507 + 0 NA Intergenic Intergenic -91147 ENSMUSG00000043753.2 ENSMUSG00000043753 ENSMUST00000052478 Dmrta1 protein_coding Interval_128286 chr5 112288249 112288934 + 0 NA promoter-TSS (ENSMUSG00000029344.15) protein_coding-promoter-TSS (ENSMUSG00000029344.15) 11884 ENSMUSG00000029344.15 ENSMUSG00000029344 ENSMUST00000139482 Tpst2 protein_coding Interval_45813 chr13 58263802 58264088 + 0 NA promoter-TSS (ENSMUSG00000021552.7) protein_coding-promoter-TSS (ENSMUSG00000021552.7) -17246 ENSMUSG00000097399.7 ENSMUSG00000097399 ENSMUST00000190479 Gm26555 antisense Interval_76954 chr17 85144373 85147551 + 0 NA intron (ENSMUSG00000071037.6, intron 3 of 10) protein_coding-intron (ENSMUSG00000071037.6, intron 3 of 10) 55356 ENSMUSG00000071037.6 ENSMUSG00000071037 ENSMUST00000234501 Camkmt protein_coding Interval_114924 chr4 87031666 87032406 + 0 NA intron (ENSMUSG00000037996.17, intron 5 of 5) protein_coding-intron (ENSMUSG00000037996.17, intron 5 of 9) 101345 ENSMUSG00000038007.14 ENSMUSG00000038007 ENSMUST00000135874 Acer2 protein_coding Interval_31229 chr11 99015811 99016071 + 0 NA TTS (ENSMUSG00000020914.17) protein_coding-TTS (ENSMUSG00000020914.17) 1211 ENSMUSG00000065262.1 ENSMUSG00000065262 ENSMUST00000083328 Gm23451 snoRNA Interval_170115 chr9 104890900 104891122 + 0 NA intron (ENSMUSG00000032564.16, intron 1 of 4) protein_coding-intron (ENSMUSG00000032564.16, intron 3 of 15) 18332 ENSMUSG00000032564.16 ENSMUSG00000032564 ENSMUST00000213452 Cpne4 protein_coding Interval_137798 chr6 82603430 82604420 + 0 NA Intergenic Intergenic -76207 ENSMUSG00000107453.1 ENSMUSG00000107453 ENSMUST00000203711 Gm44145 antisense Interval_48551 chr13 100103016 100104513 + 0 NA promoter-TSS (ENSMUSG00000049658.13) protein_coding-promoter-TSS (ENSMUSG00000049658.13) 4575 ENSMUSG00000097022.2 ENSMUSG00000097022 ENSMUST00000180822 BC001981 antisense Interval_157078 chr8 65011301 65011527 + 0 NA intron (ENSMUSG00000053490.8, intron 1 of 1) protein_coding-intron (ENSMUSG00000053490.8, intron 1 of 1) 3096 ENSMUSG00000109718.1 ENSMUSG00000109718 ENSMUST00000078409 Trim61 protein_coding Interval_63115 chr15 99161203 99161524 + 0 NA intron (ENSMUSG00000051934.5, intron 2 of 3) protein_coding-intron (ENSMUSG00000051934.5, intron 2 of 3) 13574 ENSMUSG00000087991.1 ENSMUSG00000087991 ENSMUST00000157366 Gm25057 misc_RNA Interval_163463 chr9 21557121 21558664 + 0 NA intron (ENSMUSG00000032185.15, intron 1 of 13) protein_coding-intron (ENSMUSG00000032185.15, intron 1 of 15) -23907 ENSMUSG00000092261.1 ENSMUSG00000092261 ENSMUST00000173684 Gm20519 processed_pseudogene Interval_19590 chr10 104511623 104511970 + 0 NA Intergenic Intergenic -40589 ENSMUSG00000089182.1 ENSMUSG00000089182 ENSMUST00000158557 Gm22945 snRNA Interval_54484 chr14 70167653 70168372 + 0 NA promoter-TSS (ENSMUSG00000022090.10) protein_coding-promoter-TSS (ENSMUSG00000022090.10) -8510 ENSMUSG00000044551.13 ENSMUSG00000044551 ENSMUST00000140152 9930012K11Rik protein_coding Interval_51385 chr14 27145203 27145859 + 0 NA intron (ENSMUSG00000021895.10, intron 2 of 13) protein_coding-intron (ENSMUSG00000021895.10, intron 2 of 13) 30632 ENSMUSG00000021895.10 ENSMUSG00000021895 ENSMUST00000225494 Arhgef3 protein_coding Interval_33773 chr11 118418544 118419650 + 0 NA promoter-TSS (ENSMUSG00000025575.14) protein_coding-promoter-TSS (ENSMUSG00000025575.14) -3303 ENSMUSG00000025575.14 ENSMUSG00000025575 ENSMUST00000106287 Cant1 protein_coding Interval_50049 chr13 120213738 120214070 + 0 NA TTS (ENSMUSG00000094027.2) protein_coding-TTS (ENSMUSG00000094027.2) 2043 ENSMUSG00000094027.2 ENSMUSG00000094027 ENSMUST00000177561 Gm21762 protein_coding Interval_88978 chr2 13938036 13938354 + 0 NA intron (ENSMUSG00000063275.15, intron 7 of 7) protein_coding-intron (ENSMUSG00000063275.15, intron 7 of 7) 81854 ENSMUSG00000102553.1 ENSMUSG00000102553 ENSMUST00000191894 D930036K23Rik TEC Interval_163943 chr9 29457616 29457829 + 0 NA intron (ENSMUSG00000059974.10, intron 1 of 2) protein_coding-intron (ENSMUSG00000059974.10, intron 1 of 7) 134788 ENSMUSG00000085638.1 ENSMUSG00000085638 ENSMUST00000141752 Gm15521 sense_intronic Interval_149275 chr7 96883271 96883684 + 0 NA intron (ENSMUSG00000048078.16, intron 27 of 32) protein_coding-intron (ENSMUSG00000048078.16, intron 27 of 32) -20098 ENSMUSG00000089259.1 ENSMUSG00000089259 ENSMUST00000158634 Gm25712 rRNA Interval_59947 chr15 62147290 62148744 + 0 NA intron (ENSMUSG00000097039.8, intron 2 of 6) lincRNA-intron (ENSMUSG00000097039.8, intron 2 of 8) -27405 ENSMUSG00000098595.1 ENSMUSG00000098595 ENSMUST00000184054 Gm27957 misc_RNA Interval_166222 chr9 57589105 57590347 + 0 NA promoter-TSS (ENSMUSG00000032308.9) protein_coding-promoter-TSS (ENSMUSG00000032308.9) -3751 ENSMUSG00000032308.9 ENSMUSG00000032308 ENSMUST00000217100 Ulk3 protein_coding Interval_99490 chr2 162485630 162485986 + 0 NA intron (ENSMUSG00000053141.16, intron 1 of 29) protein_coding-intron (ENSMUSG00000053141.16, intron 1 of 30) 94995 ENSMUSG00000084919.1 ENSMUSG00000084919 ENSMUST00000151688 Ptprtos antisense Interval_170946 chr9 113088747 113089311 + 0 NA intron (ENSMUSG00000110996.1, intron 2 of 2) lincRNA-intron (ENSMUSG00000110996.1, intron 5 of 6) 34000 ENSMUSG00000110996.1 ENSMUSG00000110996 ENSMUST00000214620 Gm36251 lincRNA Interval_21754 chr11 4134792 4135773 + 0 NA promoter-TSS (ENSMUSG00000003581.14) protein_coding-promoter-TSS (ENSMUSG00000003581.14) 68 ENSMUSG00000003581.14 ENSMUSG00000003581 ENSMUST00000127165 Rnf215 protein_coding Interval_63242 chr15 99897641 99898355 + 0 NA TTS (ENSMUSG00000037438.6) processed_pseudogene-TTS (ENSMUSG00000037438.6) 558 ENSMUSG00000037438.6 ENSMUSG00000037438 ENSMUST00000038391 Uqcrh-ps1 processed_pseudogene Interval_18764 chr10 90174309 90174766 + 0 NA intron (ENSMUSG00000058589.14, intron 9 of 25) protein_coding-intron (ENSMUSG00000058589.14, intron 9 of 17) -39720 ENSMUSG00000112140.1 ENSMUSG00000112140 ENSMUST00000217774 Gm5780 processed_pseudogene Interval_80684 chr18 46294241 46294438 + 0 NA intron (ENSMUSG00000071855.5, intron 3 of 9) protein_coding-intron (ENSMUSG00000071855.5, intron 3 of 9) -3489 ENSMUSG00000071855.5 ENSMUSG00000071855 ENSMUST00000237152 Ccdc112 protein_coding Interval_131070 chr5 134926279 134927214 + 0 NA Intergenic Intergenic -1873 ENSMUSG00000118469.1 ENSMUSG00000118469 ENSMUST00000238432 Gm50474 unprocessed_pseudogene Interval_31772 chr11 102761117 102763729 + 0 NA intron (ENSMUSG00000020926.16, intron 1 of 5) protein_coding-intron (ENSMUSG00000020926.16, intron 2 of 25) -11694 ENSMUSG00000020926.16 ENSMUSG00000020926 ENSMUST00000135513 Adam11 protein_coding Interval_137851 chr6 82925161 82925466 + 0 NA intron (ENSMUSG00000000627.15, intron 5 of 11) protein_coding-intron (ENSMUSG00000000627.15, intron 5 of 13) 14456 ENSMUSG00000000627.15 ENSMUSG00000000627 ENSMUST00000203271 Sema4f protein_coding Interval_45740 chr13 57528891 57529164 + 0 NA intron (ENSMUSG00000056222.15, intron 6 of 10) protein_coding-intron (ENSMUSG00000056222.15, intron 4 of 9) 252349 ENSMUSG00000114411.1 ENSMUSG00000114411 ENSMUST00000224461 Gm48176 processed_pseudogene Interval_71256 chr17 21649628 21650913 + 0 NA promoter-TSS (ENSMUSG00000035868.9) protein_coding-promoter-TSS (ENSMUSG00000035868.9) 204 ENSMUSG00000117070.1 ENSMUSG00000117070 ENSMUST00000233101 Gm41541 lincRNA Interval_126875 chr5 96373262 96374952 + 0 NA promoter-TSS (ENSMUSG00000034687.8) protein_coding-promoter-TSS (ENSMUSG00000034687.8) -99 ENSMUSG00000034687.8 ENSMUSG00000034687 ENSMUST00000198016 Fras1 protein_coding Interval_78143 chr18 9299905 9300530 + 0 NA Intergenic Intergenic -4418 ENSMUSG00000117644.1 ENSMUSG00000117644 ENSMUST00000234891 Gm50053 processed_pseudogene Interval_130402 chr5 127336350 127336621 + 0 NA intron (ENSMUSG00000034324.16, intron 1 of 8) protein_coding-intron (ENSMUSG00000034324.16, intron 1 of 8) 27468 ENSMUSG00000104971.1 ENSMUSG00000104971 ENSMUST00000196548 9430087B13Rik TEC Interval_14062 chr10 26373067 26376573 + 0 NA promoter-TSS (ENSMUSG00000039089.15) protein_coding-promoter-TSS (ENSMUSG00000039089.15) 9274 ENSMUSG00000112045.1 ENSMUSG00000112045 ENSMUST00000217918 Gm5649 processed_pseudogene Interval_77987 chr18 6458020 6458736 + 0 NA intron (ENSMUSG00000024240.13, intron 2 of 13) protein_coding-intron (ENSMUSG00000024240.13, intron 2 of 13) -16484 ENSMUSG00000024240.13 ENSMUSG00000024240 ENSMUST00000050542 Epc1 protein_coding Interval_169575 chr9 99229626 99229862 + 0 NA intron (ENSMUSG00000096316.7, intron 3 of 3) protein_coding-intron (ENSMUSG00000096316.7, intron 4 of 4) 6626 ENSMUSG00000096316.7 ENSMUSG00000096316 ENSMUST00000188555 Faiml protein_coding Interval_167672 chr9 71770401 71772567 + 0 NA promoter-TSS (ENSMUSG00000032232.14) protein_coding-promoter-TSS (ENSMUSG00000032232.14) 56053 ENSMUSG00000099220.1 ENSMUSG00000099220 ENSMUST00000183453 Gm27220 processed_pseudogene Interval_111703 chr4 26367504 26367689 + 0 NA Intergenic Intergenic 2611 ENSMUSG00000096105.1 ENSMUSG00000096105 ENSMUST00000178743 Bhmt-ps1 processed_pseudogene Interval_77842 chr18 4403489 4405045 + 0 NA Intergenic Intergenic 4939 ENSMUSG00000117579.1 ENSMUSG00000117579 ENSMUST00000234374 Gm50023 lincRNA Interval_96876 chr2 129181376 129181934 + 0 NA promoter-TSS (ENSMUSG00000084826.7) antisense-promoter-TSS (ENSMUSG00000084826.7) -1023 ENSMUSG00000084826.7 ENSMUSG00000084826 ENSMUST00000138431 AI847159 antisense Interval_145187 chr7 30525942 30526963 + 0 NA TTS (ENSMUSG00000036882.7) protein_coding-TTS (ENSMUSG00000036882.7) 6949 ENSMUSG00000036882.7 ENSMUSG00000036882 ENSMUST00000208723 Arhgap33 protein_coding Interval_51564 chr14 30242191 30242598 + 0 NA intron (ENSMUSG00000015968.18, intron 3 of 40) protein_coding-intron (ENSMUSG00000015968.18, intron 3 of 48) 34656 ENSMUSG00000114650.1 ENSMUSG00000114650 ENSMUST00000224405 Gm47570 processed_pseudogene Interval_87896 chr19 56944060 56945940 + 0 NA intron (ENSMUSG00000025083.18, intron 6 of 12) protein_coding-intron (ENSMUSG00000025083.18, intron 3 of 19) -7762 ENSMUSG00000025083.18 ENSMUSG00000025083 ENSMUST00000132851 Afap1l2 protein_coding Interval_89503 chr2 21234707 21235881 + 0 NA Intergenic Intergenic -8811 ENSMUSG00000084071.1 ENSMUSG00000084071 ENSMUST00000117483 Gm13378 processed_pseudogene Interval_23905 chr11 28140623 28141302 + 0 NA Intergenic Intergenic 94927 ENSMUSG00000083201.1 ENSMUSG00000083201 ENSMUST00000119821 Gm12080 processed_pseudogene Interval_48834 chr13 103831018 103831239 + 0 NA intron (ENSMUSG00000021709.14, intron 21 of 26) protein_coding-intron (ENSMUSG00000021709.14, intron 21 of 25) -61780 ENSMUSG00000032621.8 ENSMUSG00000032621 ENSMUST00000211139 Srek1 protein_coding Interval_30837 chr11 96788968 96790961 + 0 NA intron (ENSMUSG00000018666.13, intron 1 of 1) protein_coding-intron (ENSMUSG00000018666.13, intron 1 of 3) 789 ENSMUSG00000018666.13 ENSMUSG00000018666 ENSMUST00000079702 Cbx1 protein_coding Interval_48140 chr13 96593786 96594719 + 0 NA intron (ENSMUSG00000021669.15, intron 3 of 6) protein_coding-intron (ENSMUSG00000021669.15, intron 3 of 17) -11425 ENSMUSG00000114193.1 ENSMUSG00000114193 ENSMUST00000223019 Gm48139 TEC Interval_165829 chr9 53629281 53629538 + 0 NA intron (ENSMUSG00000032030.16, intron 10 of 17) protein_coding-intron (ENSMUSG00000032030.16, intron 11 of 18) -10568 ENSMUSG00000064622.1 ENSMUSG00000064622 ENSMUST00000082688 Gm22304 snoRNA Interval_79682 chr18 34497491 34497753 + 0 NA promoter-TSS (ENSMUSG00000036501.7) protein_coding-promoter-TSS (ENSMUSG00000036501.7) 281 ENSMUSG00000036501.7 ENSMUSG00000036501 ENSMUST00000236598 Fam13b protein_coding Interval_49466 chr13 112254379 112254850 + 0 NA Intergenic Intergenic -33837 ENSMUSG00000049985.15 ENSMUSG00000049985 ENSMUST00000223871 Ankrd55 protein_coding Interval_122245 chr5 20647410 20647942 + 0 NA intron (ENSMUSG00000040003.18, intron 15 of 15) protein_coding-intron (ENSMUSG00000040003.18, intron 20 of 22) -54601 ENSMUSG00000073174.6 ENSMUSG00000073174 ENSMUST00000189302 Gm29254 3prime_overlapping_ncRNA Interval_133593 chr6 7356473 7356678 + 0 NA Intergenic Intergenic -19392 ENSMUSG00000107517.1 ENSMUSG00000107517 ENSMUST00000203145 Gm44046 TEC Interval_24129 chr11 30615940 30616450 + 0 NA intron (ENSMUSG00000060923.5, intron 3 of 3) protein_coding-intron (ENSMUSG00000060923.5, intron 3 of 3) 33392 ENSMUSG00000060923.5 ENSMUSG00000060923 ENSMUST00000074613 Acyp2 protein_coding Interval_95171 chr2 104516813 104517081 + 0 NA Intergenic Intergenic -20490 ENSMUSG00000081447.1 ENSMUSG00000081447 ENSMUST00000117214 Gm13870 processed_pseudogene Interval_120922 chr4 151655146 151656000 + 0 NA intron (ENSMUSG00000014592.21, intron 2 of 7) protein_coding-intron (ENSMUSG00000014592.21, intron 3 of 23) 206131 ENSMUSG00000014592.21 ENSMUSG00000014592 ENSMUST00000135780 Camta1 protein_coding Interval_68400 chr16 75782426 75782664 + 0 NA Intergenic Intergenic -9488 ENSMUSG00000081250.3 ENSMUSG00000081250 ENSMUST00000120406 Gm15554 processed_pseudogene Interval_65300 chr16 21353341 21353906 + 0 NA Intergenic Intergenic -20494 ENSMUSG00000116632.1 ENSMUSG00000116632 ENSMUST00000231972 Magef1 transcribed_processed_pseudogene Interval_18473 chr10 86450472 86451096 + 0 NA intron (ENSMUSG00000059602.14, intron 2 of 8) protein_coding-intron (ENSMUSG00000059602.14, intron 2 of 13) 41113 ENSMUSG00000059602.14 ENSMUSG00000059602 ENSMUST00000139197 Syn3 protein_coding Interval_91474 chr2 39132254 39132631 + 0 NA TTS (ENSMUSG00000035236.17) protein_coding-TTS (ENSMUSG00000035236.17) -21522 ENSMUSG00000107833.1 ENSMUSG00000107833 ENSMUST00000204611 Gm18791 processed_pseudogene Interval_107366 chr3 106721463 106722720 + 0 NA exon (ENSMUSG00000056260.15, exon 1 of 4) protein_coding-exon (ENSMUSG00000056260.15, exon 1 of 4) -3508 ENSMUSG00000102780.1 ENSMUSG00000102780 ENSMUST00000194058 Gm38253 TEC Interval_146014 chr7 43122889 43123801 + 0 NA intron (ENSMUSG00000064194.10, intron 1 of 3) protein_coding-intron (ENSMUSG00000064194.10, intron 1 of 3) 9116 ENSMUSG00000064194.10 ENSMUSG00000064194 ENSMUST00000072829 Zfp936 protein_coding Interval_165984 chr9 55202333 55203201 + 0 NA intron (ENSMUSG00000032307.16, intron 1 of 2) protein_coding-intron (ENSMUSG00000032307.16, intron 11 of 12) -6219 ENSMUSG00000032309.15 ENSMUSG00000032309 ENSMUST00000133795 Fbxo22 protein_coding Interval_98923 chr2 156047866 156048851 + 0 NA intron (ENSMUSG00000013338.16, intron 8 of 44) protein_coding-intron (ENSMUSG00000013338.16, intron 8 of 44) -7770 ENSMUSG00000081002.1 ENSMUSG00000081002 ENSMUST00000120353 Gm14240 processed_pseudogene Interval_15241 chr10 43666720 43667844 + 0 NA intron (ENSMUSG00000075184.3, intron 3 of 4) lincRNA-intron (ENSMUSG00000075184.3, intron 3 of 4) 7964 ENSMUSG00000111565.1 ENSMUSG00000111565 ENSMUST00000214968 Gm34481 lincRNA Interval_80942 chr18 50782362 50783720 + 0 NA Intergenic Intergenic -181622 ENSMUSG00000048875.3 ENSMUSG00000048875 ENSMUST00000056460 Pudp protein_coding Interval_49382 chr13 111579661 111580757 + 0 NA promoter-TSS (ENSMUSG00000086649.1) processed_transcript-promoter-TSS (ENSMUSG00000086649.1) -52 ENSMUSG00000086649.1 ENSMUSG00000086649 ENSMUST00000150623 Gm15286 processed_transcript Interval_42706 chr13 18266791 18266977 + 0 NA intron (ENSMUSG00000009734.18, intron 2 of 5) protein_coding-intron (ENSMUSG00000009734.18, intron 2 of 7) 130802 ENSMUSG00000009734.18 ENSMUSG00000009734 ENSMUST00000222900 Pou6f2 protein_coding Interval_15909 chr10 59149801 59150833 + 0 NA intron (ENSMUSG00000019917.10, intron 9 of 9) protein_coding-intron (ENSMUSG00000019917.10, intron 9 of 9) -45382 ENSMUSG00000088744.1 ENSMUSG00000088744 ENSMUST00000158119 Gm23223 snoRNA Interval_163780 chr9 25606819 25607220 + 0 NA Intergenic Intergenic -37214 ENSMUSG00000077697.1 ENSMUSG00000077697 ENSMUST00000104509 Gm25346 snoRNA Interval_78317 chr18 11935989 11937009 + 0 NA intron (ENSMUSG00000040957.15, intron 6 of 8) protein_coding-intron (ENSMUSG00000040957.15, intron 6 of 8) 23368 ENSMUSG00000117430.1 ENSMUSG00000117430 ENSMUST00000234828 Gm49968 TEC Interval_156770 chr8 58750588 58750972 + 0 NA intron (ENSMUSG00000096914.3, intron 2 of 12) protein_coding-intron (ENSMUSG00000096914.3, intron 1 of 3) -49993 ENSMUSG00000085254.1 ENSMUSG00000085254 ENSMUST00000148792 Gm15881 processed_pseudogene Interval_114504 chr4 81441923 81443309 + 0 NA promoter-TSS (ENSMUSG00000028402.18) protein_coding-promoter-TSS (ENSMUSG00000028402.18) 28 ENSMUSG00000028402.18 ENSMUSG00000028402 ENSMUST00000142273 Mpdz protein_coding Interval_40561 chr12 105747027 105748022 + 0 NA exon (ENSMUSG00000041323.6, exon 2 of 2) protein_coding-exon (ENSMUSG00000041323.6, exon 2 of 2) 28668 ENSMUSG00000041323.6 ENSMUSG00000041323 ENSMUST00000220702 Ak7 protein_coding Interval_112904 chr4 45920647 45921594 + 0 NA intron (ENSMUSG00000035539.14, intron 21 of 37) protein_coding-intron (ENSMUSG00000035539.14, intron 18 of 33) 30817 ENSMUSG00000035539.14 ENSMUSG00000035539 ENSMUST00000151024 Ccdc180 protein_coding Interval_43582 chr13 33821781 33821976 + 0 NA Intergenic Intergenic 21530 ENSMUSG00000069248.11 ENSMUSG00000069248 ENSMUST00000145221 Serpinb6e protein_coding Interval_6553 chr1 116323940 116324256 + 0 NA intron (ENSMUSG00000070695.4, intron 13 of 23) protein_coding-intron (ENSMUSG00000070695.4, intron 13 of 23) 70315 ENSMUSG00000092948.1 ENSMUSG00000092948 ENSMUST00000175207 Gm23393 miRNA Interval_167250 chr9 66669729 66669949 + 0 NA Intergenic Intergenic -43890 ENSMUSG00000032373.15 ENSMUSG00000032373 ENSMUST00000134829 Car12 protein_coding Interval_44716 chr13 47667238 47667654 + 0 NA promoter-TSS (ENSMUSG00000114509.1) lincRNA-promoter-TSS (ENSMUSG00000114509.1) -104 ENSMUSG00000114509.1 ENSMUSG00000114509 ENSMUST00000223996 4930471G24Rik lincRNA Interval_161757 chr8 122574673 122575714 + 0 NA TTS (ENSMUSG00000006589.8) protein_coding-TTS (ENSMUSG00000006589.8) 296 ENSMUSG00000006589.8 ENSMUSG00000006589 ENSMUST00000211810 Aprt protein_coding Interval_152278 chr7 131337669 131337855 + 0 NA TTS (ENSMUSG00000040177.10) protein_coding-TTS (ENSMUSG00000040177.10) 3264 ENSMUSG00000030859.8 ENSMUSG00000030859 ENSMUST00000084505 Fam24a protein_coding Interval_162351 chr8 127331744 127332340 + 0 NA intron (ENSMUSG00000025812.18, intron 5 of 15) protein_coding-intron (ENSMUSG00000025812.18, intron 5 of 23) 160638 ENSMUSG00000025812.18 ENSMUSG00000025812 ENSMUST00000159940 Pard3 protein_coding Interval_136811 chr6 60732071 60732510 + 0 NA intron (ENSMUSG00000025889.13, intron 5 of 5) protein_coding-intron (ENSMUSG00000025889.13, intron 5 of 5) 38769 ENSMUSG00000107755.1 ENSMUSG00000107755 ENSMUST00000204513 Mageb16-ps2 processed_pseudogene Interval_33871 chr11 119103424 119103942 + 0 NA Intergenic Intergenic 7742 ENSMUSG00000086306.1 ENSMUSG00000086306 ENSMUST00000156576 Gm11754 lincRNA Interval_39419 chr12 87305648 87306746 + 0 NA exon (ENSMUSG00000021036.10, exon 12 of 12) protein_coding-exon (ENSMUSG00000021036.10, exon 12 of 12) -19124 ENSMUSG00000050671.12 ENSMUSG00000050671 ENSMUST00000145714 Ism2 protein_coding Interval_93275 chr2 71628991 71630494 + 0 NA Intergenic Intergenic -83792 ENSMUSG00000023391.8 ENSMUSG00000023391 ENSMUST00000134249 Dlx2 protein_coding Interval_160291 chr8 107784234 107784588 + 0 NA Intergenic Intergenic -56546 ENSMUSG00000095727.1 ENSMUSG00000095727 ENSMUST00000178119 Gm23646 miRNA Interval_52351 chr14 45362697 45363883 + 0 NA intron (ENSMUSG00000053205.9, intron 3 of 3) protein_coding-intron (ENSMUSG00000053205.9, intron 4 of 11) 12068 ENSMUSG00000053205.9 ENSMUSG00000053205 ENSMUST00000228321 Styx protein_coding Interval_174040 chrX 131359920 131360224 + 0 NA Intergenic Intergenic -186324 ENSMUSG00000083999.1 ENSMUSG00000083999 ENSMUST00000118716 Gm7790 processed_pseudogene Interval_12715 chr10 4456562 4457776 + 0 NA Intergenic Intergenic 24529 ENSMUSG00000061759.15 ENSMUSG00000061759 ENSMUST00000131636 Armt1 protein_coding Interval_168392 chr9 80003836 80004107 + 0 NA exon (ENSMUSG00000111827.1, exon 1 of 1) processed_pseudogene-exon (ENSMUSG00000111827.1, exon 1 of 1) 133 ENSMUSG00000111827.1 ENSMUSG00000111827 ENSMUST00000213783 Gm8131 processed_pseudogene Interval_52912 chr14 52013740 52015002 + 0 NA TTS (ENSMUSG00000049295.17) protein_coding-TTS (ENSMUSG00000049295.17) -2523 ENSMUSG00000072571.3 ENSMUSG00000072571 ENSMUST00000227295 Tmem253 protein_coding Interval_150446 chr7 110701284 110702269 + 0 NA Intergenic Intergenic -2042 ENSMUSG00000109700.1 ENSMUSG00000109700 ENSMUST00000210822 Gm21123 lincRNA Interval_67356 chr16 47498062 47498565 + 0 NA Intergenic Intergenic 8112 ENSMUSG00000087732.1 ENSMUSG00000087732 ENSMUST00000157107 Gm24651 snRNA Interval_44359 chr13 44126053 44127411 + 0 NA Intergenic Intergenic 5565 ENSMUSG00000089815.7 ENSMUSG00000089815 ENSMUST00000159595 Gm5083 lincRNA Interval_82890 chr18 78389231 78389605 + 0 NA intron (ENSMUSG00000024552.16, intron 2 of 21) protein_coding-intron (ENSMUSG00000024552.16, intron 2 of 11) 39664 ENSMUSG00000090451.1 ENSMUSG00000090451 ENSMUST00000164064 Gm6133 protein_coding Interval_3256 chr1 55205921 55206542 + 0 NA intron (ENSMUSG00000025978.14, intron 1 of 1) protein_coding-intron (ENSMUSG00000025978.14, intron 4 of 8) -20067 ENSMUSG00000097649.2 ENSMUSG00000097649 ENSMUST00000209801 Gm10561 antisense Interval_132927 chr5 148780847 148781679 + 0 NA intron (ENSMUSG00000085740.1, intron 2 of 2) lincRNA-intron (ENSMUSG00000085740.1, intron 2 of 2) 3300 ENSMUSG00000085740.1 ENSMUSG00000085740 ENSMUST00000155504 4930505K14Rik lincRNA Interval_102912 chr3 32736278 32737630 + 0 NA promoter-TSS (ENSMUSG00000027673.12) protein_coding-promoter-TSS (ENSMUSG00000027673.12) -122 ENSMUSG00000027673.12 ENSMUSG00000027673 ENSMUST00000122290 Ndufb5 protein_coding Interval_65155 chr16 20226567 20227813 + 0 NA intron (ENSMUSG00000041215.16, intron 1 of 2) protein_coding-intron (ENSMUSG00000041215.16, intron 26 of 29) 4434 ENSMUSG00000041215.16 ENSMUSG00000041215 ENSMUST00000231997 Yeats2 protein_coding Interval_135018 chr6 34673510 34675256 + 0 NA intron (ENSMUSG00000029761.16, intron 2 of 2) protein_coding-intron (ENSMUSG00000029761.16, intron 2 of 13) -20489 ENSMUSG00000085382.1 ENSMUSG00000085382 ENSMUST00000137136 Gm13861 lincRNA Interval_75389 chr17 66315375 66316148 + 0 NA Intergenic Intergenic 3751 ENSMUSG00000117010.1 ENSMUSG00000117010 ENSMUST00000233050 Gm49933 processed_pseudogene Interval_139846 chr6 111013113 111013348 + 0 NA intron (ENSMUSG00000056755.13, intron 3 of 9) protein_coding-intron (ENSMUSG00000056755.13, intron 2 of 10) 274880 ENSMUSG00000092603.1 ENSMUSG00000092603 ENSMUST00000174010 Gm20386 processed_pseudogene Interval_155704 chr8 36272321 36272634 + 0 NA Intergenic Intergenic -22961 ENSMUSG00000039633.7 ENSMUSG00000039633 ENSMUST00000065297 Lonrf1 protein_coding Interval_13886 chr10 24262744 24263582 + 0 NA intron (ENSMUSG00000020000.7, intron 4 of 11) protein_coding-intron (ENSMUSG00000020000.7, intron 4 of 11) 39618 ENSMUSG00000020000.7 ENSMUSG00000020000 ENSMUST00000154916 Moxd1 protein_coding Interval_107736 chr3 112242677 112243445 + 0 NA Intergenic Intergenic -40046 ENSMUSG00000105507.1 ENSMUSG00000105507 ENSMUST00000197162 Gm43853 processed_pseudogene Interval_38577 chr12 80223046 80224791 + 0 NA intron (ENSMUSG00000015143.15, intron 1 of 20) protein_coding-intron (ENSMUSG00000015143.15, intron 1 of 20) 14675 ENSMUSG00000112852.1 ENSMUSG00000112852 ENSMUST00000218235 Gm47767 antisense Interval_53597 chr14 59730128 59730640 + 0 NA intron (ENSMUSG00000021983.16, intron 32 of 35) protein_coding-intron (ENSMUSG00000021983.16, intron 32 of 35) 87836 ENSMUSG00000114593.1 ENSMUSG00000114593 ENSMUST00000224256 Gm19716 transcribed_processed_pseudogene Interval_121548 chr5 3360992 3361230 + 0 NA intron (ENSMUSG00000040274.11, intron 1 of 1) protein_coding-intron (ENSMUSG00000040274.11, intron 1 of 6) 90792 ENSMUSG00000106658.1 ENSMUSG00000106658 ENSMUST00000197473 Gm36548 lincRNA Interval_100533 chr2 169986737 169988642 + 0 NA intron (ENSMUSG00000047907.11, intron 1 of 1) protein_coding-intron (ENSMUSG00000047907.11, intron 1 of 1) -24502 ENSMUSG00000103935.1 ENSMUSG00000103935 ENSMUST00000194482 AY702102 TEC Interval_125708 chr5 73405928 73407018 + 0 NA intron (ENSMUSG00000029154.13, intron 1 of 14) protein_coding-intron (ENSMUSG00000029154.13, intron 1 of 15) -8660 ENSMUSG00000106958.1 ENSMUSG00000106958 ENSMUST00000202712 Gm35960 processed_pseudogene Interval_145357 chr7 34198279 34198813 + 0 NA Intergenic Intergenic -5765 ENSMUSG00000002635.11 ENSMUSG00000002635 ENSMUST00000125803 Pdcd2l protein_coding Interval_132172 chr5 143076234 143076431 + 0 NA intron (ENSMUSG00000045078.12, intron 10 of 16) protein_coding-intron (ENSMUSG00000045078.12, intron 10 of 16) 8679 ENSMUSG00000105714.1 ENSMUSG00000105714 ENSMUST00000200421 Gm43380 processed_pseudogene Interval_126314 chr5 86491868 86492223 + 0 NA intron (ENSMUSG00000079451.9, intron 6 of 8) protein_coding-intron (ENSMUSG00000079451.9, intron 7 of 9) -1406 ENSMUSG00000079451.9 ENSMUSG00000079451 ENSMUST00000199703 Tmprss11g protein_coding Interval_123650 chr5 34281263 34281565 + 0 NA intron (ENSMUSG00000037224.15, intron 1 of 3) protein_coding-intron (ENSMUSG00000037224.15, intron 1 of 12) -7186 ENSMUSG00000109572.1 ENSMUSG00000109572 ENSMUST00000207754 Cfap99 protein_coding Interval_78975 chr18 23463839 23464067 + 0 NA intron (ENSMUSG00000024302.16, intron 1 of 17) protein_coding-intron (ENSMUSG00000024302.16, intron 1 of 11) -32882 ENSMUSG00000024302.16 ENSMUSG00000024302 ENSMUST00000222726 Dtna protein_coding Interval_149317 chr7 97411544 97411769 + 0 NA Intergenic Intergenic 5516 ENSMUSG00000083974.1 ENSMUSG00000083974 ENSMUST00000120511 Gm16053 processed_pseudogene Interval_5365 chr1 87919893 87920154 + 0 NA intron (ENSMUSG00000070738.10, intron 2 of 2) protein_coding-intron (ENSMUSG00000070738.10, intron 9 of 29) 2125 ENSMUSG00000070738.10 ENSMUSG00000070738 ENSMUST00000189448 Dgkd protein_coding Interval_166409 chr9 59245707 59246215 + 0 NA Intergenic Intergenic -10890 ENSMUSG00000110789.1 ENSMUSG00000110789 ENSMUST00000215275 Gm33053 lincRNA Interval_165613 chr9 50421267 50421627 + 0 NA Intergenic Intergenic -73080 ENSMUSG00000032068.14 ENSMUSG00000032068 ENSMUST00000188047 Plet1 protein_coding Interval_24505 chr11 33818895 33819306 + 0 NA intron (ENSMUSG00000053519.17, intron 1 of 8) protein_coding-intron (ENSMUSG00000053519.17, intron 1 of 7) 113550 ENSMUSG00000087328.1 ENSMUSG00000087328 ENSMUST00000125068 Gm12120 antisense Interval_150745 chr7 114070169 114070682 + 0 NA intron (ENSMUSG00000055723.6, intron 1 of 5) protein_coding-intron (ENSMUSG00000055723.6, intron 1 of 5) -16473 ENSMUSG00000110248.1 ENSMUSG00000110248 ENSMUST00000210417 Gm45615 antisense Interval_61479 chr15 81871448 81873011 + 0 NA promoter-TSS (ENSMUSG00000022477.13) protein_coding-promoter-TSS (ENSMUSG00000022477.13) -461 ENSMUSG00000022477.13 ENSMUSG00000022477 ENSMUST00000144324 Aco2 protein_coding Interval_10711 chr1 173410347 173410607 + 0 NA intron (ENSMUSG00000037860.15, intron 2 of 11) protein_coding-intron (ENSMUSG00000037860.15, intron 2 of 11) -42829 ENSMUSG00000005338.13 ENSMUSG00000005338 ENSMUST00000126963 Cadm3 protein_coding Interval_88075 chr19 58848267 58848483 + 0 NA intron (ENSMUSG00000025092.7, intron 2 of 6) protein_coding-intron (ENSMUSG00000025092.7, intron 1 of 11) -26254 ENSMUSG00000025092.7 ENSMUSG00000025092 ENSMUST00000237786 Hspa12a protein_coding Interval_140982 chr6 123793322 123794472 + 0 NA intron (ENSMUSG00000072780.3, intron 3 of 4) protein_coding-intron (ENSMUSG00000072780.3, intron 3 of 5) 14324 ENSMUSG00000088472.1 ENSMUSG00000088472 ENSMUST00000157847 Gm23079 snoRNA Interval_91896 chr2 51079649 51080685 + 0 NA Intergenic Intergenic 68943 ENSMUSG00000017144.8 ENSMUSG00000017144 ENSMUST00000140864 Rnd3 protein_coding Interval_115223 chr4 94556062 94557330 + 0 NA promoter-TSS (ENSMUSG00000028578.8) protein_coding-promoter-TSS (ENSMUSG00000028578.8) 70 ENSMUSG00000028578.8 ENSMUSG00000028578 ENSMUST00000153294 Caap1 protein_coding Interval_37710 chr12 71301464 71302089 + 0 NA Intergenic Intergenic -8208 ENSMUSG00000044548.11 ENSMUSG00000044548 ENSMUST00000150639 Dact1 protein_coding Interval_91721 chr2 48836333 48836565 + 0 NA intron (ENSMUSG00000052155.5, intron 1 of 10) protein_coding-intron (ENSMUSG00000052155.5, intron 1 of 10) -25894 ENSMUSG00000082114.2 ENSMUSG00000082114 ENSMUST00000121234 Gm13489 processed_pseudogene Interval_94319 chr2 88617157 88617493 + 0 NA Intergenic Intergenic -5980 ENSMUSG00000075126.4 ENSMUSG00000075126 ENSMUST00000117982 Olfr475-ps1 polymorphic_pseudogene Interval_105289 chr3 84622892 84623213 + 0 NA intron (ENSMUSG00000102805.5, intron 3 of 9) protein_coding-intron (ENSMUSG00000102805.5, intron 3 of 9) 29478 ENSMUSG00000047819.3 ENSMUSG00000047819 ENSMUST00000062623 Tigd4 protein_coding Interval_100019 chr2 166562024 166562232 + 0 NA Intergenic Intergenic -52954 ENSMUSG00000085682.2 ENSMUSG00000085682 ENSMUST00000123480 Gm14267 transcribed_processed_pseudogene Interval_47307 chr13 80986531 80986841 + 0 NA intron (ENSMUSG00000097098.8, intron 1 of 1) antisense-intron (ENSMUSG00000097098.8, intron 1 of 1) 5542 ENSMUSG00000097098.8 ENSMUSG00000097098 ENSMUST00000223730 9330111N05Rik antisense Interval_159812 chr8 104001876 104002589 + 0 NA Intergenic Intergenic -68917 ENSMUSG00000110019.1 ENSMUSG00000110019 ENSMUST00000211125 Gm8748 processed_pseudogene Interval_125062 chr5 64191254 64191486 + 0 NA promoter-TSS (ENSMUSG00000083435.2) processed_pseudogene-promoter-TSS (ENSMUSG00000083435.2) -383 ENSMUSG00000083435.2 ENSMUSG00000083435 ENSMUST00000119516 Gm15824 processed_pseudogene Interval_109921 chr3 151680528 151680860 + 0 NA Intergenic Intergenic 69188 ENSMUSG00000028037.13 ENSMUSG00000028037 ENSMUST00000127733 Ifi44 protein_coding Interval_172025 chr9 123625987 123626387 + 0 NA intron (ENSMUSG00000025243.15, intron 1 of 11) protein_coding-intron (ENSMUSG00000025243.15, intron 1 of 10) 2375 ENSMUSG00000025243.15 ENSMUSG00000025243 ENSMUST00000164241 Slc6a20b protein_coding Interval_105095 chr3 81135915 81137059 + 0 NA intron (ENSMUSG00000028019.9, intron 2 of 5) protein_coding-intron (ENSMUSG00000028019.9, intron 1 of 5) -96050 ENSMUSG00000085106.1 ENSMUSG00000085106 ENSMUST00000146657 Gm16000 antisense Interval_97743 chr2 143695907 143697001 + 0 NA intron (ENSMUSG00000027419.9, intron 4 of 11) protein_coding-intron (ENSMUSG00000027419.9, intron 4 of 11) 99511 ENSMUSG00000087115.7 ENSMUSG00000087115 ENSMUST00000156362 Pcsk2os2 antisense Interval_25359 chr11 46657358 46657592 + 0 NA Intergenic Intergenic -10516 ENSMUSG00000080970.1 ENSMUSG00000080970 ENSMUST00000117622 Gm12173 unprocessed_pseudogene Interval_101457 chr2 181552759 181553296 + 0 NA TTS (ENSMUSG00000000826.16) protein_coding-TTS (ENSMUSG00000000826.16) 21449 ENSMUSG00000089917.7 ENSMUSG00000089917 ENSMUST00000131949 Uckl1 protein_coding Interval_112642 chr4 43744959 43745735 + 0 NA intron (ENSMUSG00000028475.9, intron 2 of 5) protein_coding-intron (ENSMUSG00000028475.9, intron 2 of 5) 13088 ENSMUSG00000028475.9 ENSMUSG00000028475 ENSMUST00000142309 Spaar protein_coding Interval_93095 chr2 70092103 70092862 + 0 NA intron (ENSMUSG00000042064.13, intron 1 of 33) protein_coding-intron (ENSMUSG00000042064.13, intron 2 of 34) 9408 ENSMUSG00000042064.13 ENSMUSG00000042064 ENSMUST00000112241 Myo3b protein_coding Interval_90186 chr2 28880724 28880979 + 0 NA intron (ENSMUSG00000026806.15, intron 16 of 19) protein_coding-intron (ENSMUSG00000026806.15, intron 16 of 19) 23710 ENSMUSG00000026806.15 ENSMUSG00000026806 ENSMUST00000152685 Ddx31 protein_coding Interval_16725 chr10 67219001 67220656 + 0 NA exon (ENSMUSG00000037876.17, exon 8 of 26) protein_coding-exon (ENSMUSG00000037876.17, exon 8 of 26) 16133 ENSMUSG00000089498.1 ENSMUSG00000089498 ENSMUST00000158873 Gm26359 snRNA Interval_67004 chr16 39284772 39285368 + 0 NA Intergenic Intergenic -96164 ENSMUSG00000116965.1 ENSMUSG00000116965 ENSMUST00000231748 Gm36742 lincRNA Interval_85165 chr19 23264611 23265039 + 0 NA promoter-TSS (ENSMUSG00000024943.9) protein_coding-promoter-TSS (ENSMUSG00000024943.9) 7774 ENSMUSG00000024943.9 ENSMUSG00000024943 ENSMUST00000224723 Smc5 protein_coding Interval_133047 chr5 149502939 149503154 + 0 NA promoter-TSS (ENSMUSG00000106879.1) processed_pseudogene-promoter-TSS (ENSMUSG00000106879.1) 6 ENSMUSG00000106879.1 ENSMUSG00000106879 ENSMUST00000201267 Gm2566 processed_pseudogene Interval_3411 chr1 58112923 58113408 + 0 NA promoter-TSS (ENSMUSG00000064294.12) protein_coding-promoter-TSS (ENSMUSG00000064294.12) -21 ENSMUSG00000064294.12 ENSMUSG00000064294 ENSMUST00000160815 Aox3 protein_coding Interval_143765 chr7 16183520 16184310 + 0 NA promoter-TSS (ENSMUSG00000041420.18) protein_coding-promoter-TSS (ENSMUSG00000041420.18) 6169 ENSMUSG00000041420.18 ENSMUSG00000041420 ENSMUST00000176714 Meis3 protein_coding Interval_112383 chr4 40953501 40954354 + 0 NA intron (ENSMUSG00000028419.5, intron 5 of 7) protein_coding-intron (ENSMUSG00000028419.5, intron 5 of 7) 5520 ENSMUSG00000028419.5 ENSMUSG00000028419 ENSMUST00000030128 Chmp5 protein_coding Interval_23070 chr11 19651766 19652083 + 0 NA Intergenic Intergenic -23863 ENSMUSG00000086911.1 ENSMUSG00000086911 ENSMUST00000146531 Gm12027 lincRNA Interval_11922 chr1 187169733 187170248 + 0 NA intron (ENSMUSG00000026611.17, intron 1 of 2) protein_coding-intron (ENSMUSG00000026611.17, intron 5 of 9) -26893 ENSMUSG00000026611.17 ENSMUSG00000026611 ENSMUST00000183469 Spata17 protein_coding Interval_63701 chr15 102936689 102937563 + 0 NA exon (ENSMUSG00000050328.2, exon 1 of 2) protein_coding-exon (ENSMUSG00000050328.2, exon 1 of 2) 369 ENSMUSG00000050328.2 ENSMUSG00000050328 ENSMUST00000055562 Hoxc12 protein_coding Interval_128721 chr5 114914915 114915143 + 0 NA Intergenic Intergenic 8248 ENSMUSG00000087477.1 ENSMUSG00000087477 ENSMUST00000127563 Gm13822 antisense Interval_84494 chr19 11867902 11869291 + 0 NA TTS (ENSMUSG00000067545.3) protein_coding-TTS (ENSMUSG00000067545.3) -3962 ENSMUSG00000108966.1 ENSMUSG00000108966 ENSMUST00000207612 Gm45119 unprocessed_pseudogene Interval_113122 chr4 48472627 48473836 + 0 NA intron (ENSMUSG00000028345.15, intron 1 of 15) protein_coding-intron (ENSMUSG00000028345.15, intron 1 of 14) 191 ENSMUSG00000028345.15 ENSMUSG00000028345 ENSMUST00000132911 Tex10 protein_coding Interval_157809 chr8 73619008 73619514 + 0 NA Intergenic Intergenic 22244 ENSMUSG00000076199.1 ENSMUSG00000076199 ENSMUST00000102244 Gm23255 miRNA Interval_169748 chr9 100925771 100926429 + 0 NA intron (ENSMUSG00000037286.15, intron 3 of 7) protein_coding-intron (ENSMUSG00000037286.15, intron 22 of 32) -29669 ENSMUSG00000037286.15 ENSMUSG00000037286 ENSMUST00000191345 Stag1 protein_coding Interval_33444 chr11 116572892 116575088 + 0 NA intron (ENSMUSG00000020802.8, intron 1 of 17) protein_coding-intron (ENSMUSG00000020802.8, intron 1 of 17) -19697 ENSMUSG00000020804.12 ENSMUSG00000020804 ENSMUST00000132601 Aanat protein_coding Interval_159785 chr8 103411280 103411473 + 0 NA Intergenic Intergenic -63842 ENSMUSG00000110340.1 ENSMUSG00000110340 ENSMUST00000209501 1600027J07Rik lincRNA Interval_119755 chr4 139708903 139709256 + 0 NA Intergenic Intergenic 55530 ENSMUSG00000028738.14 ENSMUSG00000028738 ENSMUST00000166773 Tas1r2 protein_coding Interval_33834 chr11 118874924 118875379 + 0 NA intron (ENSMUSG00000025576.17, intron 1 of 13) protein_coding-intron (ENSMUSG00000025576.17, intron 1 of 14) -7931 ENSMUSG00000084887.1 ENSMUSG00000084887 ENSMUST00000127327 Gm11749 sense_intronic Interval_37407 chr12 67495187 67495438 + 0 NA Intergenic Intergenic -6081 ENSMUSG00000065233.1 ENSMUSG00000065233 ENSMUST00000083299 n-R5s60 rRNA Interval_76820 chr17 84283921 84284332 + 0 NA intron (ENSMUSG00000024251.10, intron 14 of 14) protein_coding-intron (ENSMUSG00000024251.10, intron 29 of 37) 3621 ENSMUSG00000065732.1 ENSMUSG00000065732 ENSMUST00000083798 Gm24492 snRNA Interval_41884 chr13 3877845 3878092 + 0 NA Intergenic Intergenic 22280 ENSMUSG00000113128.1 ENSMUSG00000113128 ENSMUST00000223370 Gm47813 TEC Interval_58446 chr15 34579224 34580112 + 0 NA intron (ENSMUSG00000038879.8, intron 1 of 4) protein_coding-intron (ENSMUSG00000038879.8, intron 8 of 10) 3103 ENSMUSG00000038879.8 ENSMUSG00000038879 ENSMUST00000227126 Nipal2 protein_coding Interval_154 JH584304.1 165 7469 + 0 NA NA NA NA NA Interval_43300 chr13 28873696 28874476 + 0 NA intron (ENSMUSG00000085936.7, intron 2 of 7) processed_transcript-intron (ENSMUSG00000085936.7, intron 1 of 5) 23859 ENSMUSG00000113352.1 ENSMUSG00000113352 ENSMUST00000223473 Gm34639 lincRNA Interval_25347 chr11 46564542 46565550 + 0 NA Intergenic Intergenic 3015 ENSMUSG00000082749.1 ENSMUSG00000082749 ENSMUST00000120821 Rpl9-ps2 processed_pseudogene Interval_172691 chrX 42489584 42490226 + 0 NA exon (ENSMUSG00000105993.1, exon 1 of 1) protein_coding-exon (ENSMUSG00000105993.1, exon 1 of 1) 214 ENSMUSG00000105993.1 ENSMUSG00000105993 ENSMUST00000197237 Tex13c2 protein_coding Interval_4399 chr1 73905663 73906571 + 0 NA Intergenic Intergenic -50542 ENSMUSG00000098504.1 ENSMUSG00000098504 ENSMUST00000183826 Mir6351 miRNA Interval_160397 chr8 108933497 108933688 + 0 NA exon (ENSMUSG00000038872.10, exon 6 of 10) protein_coding-exon (ENSMUSG00000038872.10, exon 6 of 10) -3268 ENSMUSG00000093241.1 ENSMUSG00000093241 ENSMUST00000175500 Mir3108 miRNA Interval_153573 chr8 3479190 3479541 + 0 NA intron (ENSMUSG00000040340.13, intron 3 of 7) protein_coding-intron (ENSMUSG00000040340.13, intron 4 of 8) 3516 ENSMUSG00000040340.13 ENSMUSG00000040340 ENSMUST00000161680 Tex45 protein_coding Interval_80489 chr18 42660163 42660794 + 0 NA intron (ENSMUSG00000024500.20, intron 8 of 9) protein_coding-intron (ENSMUSG00000024500.20, intron 7 of 8) -38019 ENSMUSG00000117926.1 ENSMUSG00000117926 ENSMUST00000236808 C030004G16Rik lincRNA Interval_42064 chr13 7169427 7170524 + 0 NA intron (ENSMUSG00000113241.1, intron 1 of 4) lincRNA-intron (ENSMUSG00000113241.1, intron 1 of 4) -5640 ENSMUSG00000113241.1 ENSMUSG00000113241 ENSMUST00000221816 Gm40663 lincRNA Interval_148216 chr7 79934675 79935836 + 0 NA exon (ENSMUSG00000039043.5, exon 1 of 6) protein_coding-exon (ENSMUSG00000039043.5, exon 1 of 6) 104 ENSMUSG00000039043.5 ENSMUSG00000039043 ENSMUST00000048731 Arpin protein_coding Interval_11684 chr1 184655960 184656126 + 0 NA Intergenic Intergenic -26570 ENSMUSG00000103308.5 ENSMUSG00000103308 ENSMUST00000192129 Gm37800 lincRNA Interval_74170 chr17 46882714 46883819 + 0 NA Intergenic Intergenic -7418 ENSMUSG00000036430.8 ENSMUSG00000036430 ENSMUST00000040434 Tbcc protein_coding Interval_81636 chr18 62684153 62685726 + 0 NA intron (ENSMUSG00000073551.5, intron 1 of 4) protein_coding-intron (ENSMUSG00000073551.5, intron 1 of 4) 13678 ENSMUSG00000117712.1 ENSMUSG00000117712 ENSMUST00000236939 Gm19159 processed_pseudogene Interval_17259 chr10 75394663 75394995 + 0 NA intron (ENSMUSG00000033416.15, intron 6 of 8) protein_coding-intron (ENSMUSG00000033416.15, intron 6 of 8) -6286 ENSMUSG00000033427.14 ENSMUSG00000033427 ENSMUST00000129946 Upb1 protein_coding Interval_77401 chr17 88474476 88474793 + 0 NA intron (ENSMUSG00000034998.18, intron 3 of 6) protein_coding-intron (ENSMUSG00000034998.18, intron 2 of 5) 33899 ENSMUSG00000034998.18 ENSMUSG00000034998 ENSMUST00000141052 Foxn2 protein_coding Interval_141607 chr6 131114876 131115284 + 0 NA Intergenic Intergenic -10743 ENSMUSG00000107464.1 ENSMUSG00000107464 ENSMUST00000203317 Gm44150 unprocessed_pseudogene Interval_174014 chrX 129690735 129690944 + 0 NA Intergenic Intergenic -58903 ENSMUSG00000034480.18 ENSMUSG00000034480 ENSMUST00000133457 Diaph2 protein_coding Interval_132692 chr5 147188211 147190043 + 0 NA exon (ENSMUSG00000053129.5, exon 1 of 2) protein_coding-exon (ENSMUSG00000053129.5, exon 1 of 2) 431 ENSMUSG00000053129.5 ENSMUSG00000053129 ENSMUST00000065382 Gsx1 protein_coding Interval_462 chr1 5782623 5783030 + 0 NA Intergenic Intergenic 61846 ENSMUSG00000103519.1 ENSMUSG00000103519 ENSMUST00000193807 Gm37429 TEC Interval_63706 chr15 102954362 102957381 + 0 NA intron (ENSMUSG00000001656.3, intron 1 of 1) protein_coding-intron (ENSMUSG00000001656.3, intron 1 of 1) 1444 ENSMUSG00000001656.3 ENSMUSG00000001656 ENSMUST00000001701 Hoxc11 protein_coding Interval_164135 chr9 31912657 31915370 + 0 NA promoter-TSS (ENSMUSG00000032033.11) protein_coding-promoter-TSS (ENSMUSG00000032033.11) -551 ENSMUSG00000032033.11 ENSMUSG00000032033 ENSMUST00000116615 Barx2 protein_coding Interval_46841 chr13 72252956 72254349 + 0 NA Intergenic Intergenic -96569 ENSMUSG00000113594.1 ENSMUSG00000113594 ENSMUST00000220890 Gm4052 processed_pseudogene Interval_119472 chr4 137795785 137796916 + 0 NA promoter-TSS (ENSMUSG00000028766.10) protein_coding-promoter-TSS (ENSMUSG00000028766.10) -14159 ENSMUSG00000028766.10 ENSMUSG00000028766 ENSMUST00000143757 Alpl protein_coding Interval_39618 chr12 91588157 91590947 + 0 NA promoter-TSS (ENSMUSG00000020962.14) protein_coding-promoter-TSS (ENSMUSG00000020962.14) 87 ENSMUSG00000020962.14 ENSMUSG00000020962 ENSMUST00000163693 Gtf2a1 protein_coding Interval_48693 chr13 101509486 101509783 + 0 NA Intergenic Intergenic -35572 ENSMUSG00000114400.1 ENSMUSG00000114400 ENSMUST00000224257 Gm47533 lincRNA Interval_137647 chr6 77582601 77582806 + 0 NA intron (ENSMUSG00000063063.12, intron 8 of 18) protein_coding-intron (ENSMUSG00000063063.12, intron 7 of 17) 5778 ENSMUSG00000107707.1 ENSMUSG00000107707 ENSMUST00000204098 Gm44286 TEC Interval_84446 chr19 10961058 10962114 + 0 NA TTS (ENSMUSG00000024731.15) protein_coding-TTS (ENSMUSG00000024731.15) -12335 ENSMUSG00000024732.7 ENSMUSG00000024732 ENSMUST00000189018 Ccdc86 protein_coding Interval_104677 chr3 69336076 69337218 + 0 NA promoter-TSS (ENSMUSG00000090941.1) processed_pseudogene-promoter-TSS (ENSMUSG00000090941.1) -887 ENSMUSG00000090941.1 ENSMUSG00000090941 ENSMUST00000166666 Gm17212 processed_pseudogene Interval_35994 chr12 33173250 33174900 + 0 NA intron (ENSMUSG00000020564.17, intron 2 of 12) protein_coding-intron (ENSMUSG00000020564.17, intron 1 of 2) -26479 ENSMUSG00000052125.16 ENSMUSG00000052125 ENSMUST00000172344 F730043M19Rik bidirectional_promoter_lncRNA Interval_153436 chr7 144789663 144791608 + 0 NA intron (ENSMUSG00000109442.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000109442.1, intron 1 of 2) 1173 ENSMUSG00000109442.1 ENSMUSG00000109442 ENSMUST00000207398 Gm34964 lincRNA Interval_15494 chr10 49136570 49138286 + 0 NA intron (ENSMUSG00000056073.16, intron 3 of 7) protein_coding-intron (ENSMUSG00000056073.16, intron 13 of 15) -33497 ENSMUSG00000056073.16 ENSMUSG00000056073 ENSMUST00000220263 Grik2 protein_coding Interval_68059 chr16 64796151 64797561 + 0 NA intron (ENSMUSG00000047141.5, intron 3 of 8) protein_coding-intron (ENSMUSG00000047141.5, intron 3 of 8) -30200 ENSMUSG00000059920.9 ENSMUSG00000059920 ENSMUST00000076991 4930453N24Rik protein_coding Interval_119776 chr4 139900217 139900767 + 0 NA Intergenic Intergenic -9996 ENSMUSG00000087646.1 ENSMUSG00000087646 ENSMUST00000151651 Gm1667 lincRNA Interval_55582 chr14 93602851 93603104 + 0 NA intron (ENSMUSG00000055421.8, intron 2 of 4) protein_coding-intron (ENSMUSG00000055421.8, intron 1 of 3) -15869 ENSMUSG00000115023.1 ENSMUSG00000115023 ENSMUST00000228155 Gm48967 TEC Interval_46627 chr13 67732338 67732681 + 0 NA intron (ENSMUSG00000044081.7, intron 1 of 2) processed_transcript-intron (ENSMUSG00000044081.7, intron 1 of 2) -7071 ENSMUSG00000114887.1 ENSMUSG00000114887 ENSMUST00000225752 Gm48894 processed_pseudogene Interval_159836 chr8 104212998 104213263 + 0 NA intron (ENSMUSG00000031872.14, intron 2 of 3) protein_coding-intron (ENSMUSG00000031872.14, intron 3 of 4) 5169 ENSMUSG00000110674.1 ENSMUSG00000110674 ENSMUST00000212627 Gm45892 antisense Interval_6658 chr1 118588499 118588783 + 0 NA intron (ENSMUSG00000064302.13, intron 11 of 14) protein_coding-intron (ENSMUSG00000064302.13, intron 36 of 39) -39304 ENSMUSG00000026380.10 ENSMUSG00000026380 ENSMUST00000027629 Tfcp2l1 protein_coding Interval_27377 chr11 67080166 67081611 + 0 NA intron (ENSMUSG00000020908.14, intron 2 of 39) protein_coding-intron (ENSMUSG00000020908.14, intron 2 of 39) 2588 ENSMUSG00000020908.14 ENSMUSG00000020908 ENSMUST00000165221 Myh3 protein_coding Interval_61550 chr15 82274242 82276145 + 0 NA promoter-TSS (ENSMUSG00000022456.18) protein_coding-promoter-TSS (ENSMUSG00000022456.18) 6391 ENSMUSG00000022456.18 ENSMUSG00000022456 ENSMUST00000230507 Septin3 protein_coding Interval_44142 chr13 41184322 41185000 + 0 NA exon (ENSMUSG00000021364.16, exon 8 of 8) protein_coding-exon (ENSMUSG00000021364.16, exon 8 of 8) 7773 ENSMUSG00000114388.1 ENSMUSG00000114388 ENSMUST00000225455 Gm48510 lincRNA Interval_72212 chr17 28603358 28604150 + 0 NA intron (ENSMUSG00000004865.16, intron 6 of 14) protein_coding-intron (ENSMUSG00000004865.16, intron 3 of 11) 18729 ENSMUSG00000004865.16 ENSMUSG00000004865 ENSMUST00000114767 Srpk1 protein_coding Interval_71082 chr17 17786640 17786884 + 0 NA Intergenic Intergenic 3630 ENSMUSG00000084605.1 ENSMUSG00000084605 ENSMUST00000122656 Gm23837 misc_RNA Interval_106571 chr3 97338761 97339361 + 0 NA Intergenic Intergenic -41144 ENSMUSG00000038256.15 ENSMUSG00000038256 ENSMUST00000127319 Bcl9 protein_coding Interval_19032 chr10 93915812 93916069 + 0 NA TTS (ENSMUSG00000087798.1) snoRNA-TTS (ENSMUSG00000087798.1) 396 ENSMUSG00000087798.1 ENSMUSG00000087798 ENSMUST00000157173 Gm25962 snoRNA Interval_24430 chr11 33200256 33204598 + 0 NA intron (ENSMUSG00000040610.7, intron 2 of 2) protein_coding-intron (ENSMUSG00000040610.7, intron 2 of 2) 1162 ENSMUSG00000040610.7 ENSMUSG00000040610 ENSMUST00000037746 Tlx3 protein_coding Interval_34111 chr11 120696109 120698324 + 0 NA intron (ENSMUSG00000025142.18, intron 1 of 5) protein_coding-intron (ENSMUSG00000025142.18, intron 7 of 15) -11642 ENSMUSG00000025142.18 ENSMUSG00000025142 ENSMUST00000172392 Aspscr1 protein_coding Interval_146718 chr7 49676473 49679174 + 0 NA Intergenic Intergenic -40974 ENSMUSG00000030507.6 ENSMUSG00000030507 ENSMUST00000032717 Dbx1 protein_coding Interval_49870 chr13 117425745 117425929 + 0 NA Intergenic Intergenic 33238 ENSMUSG00000114358.1 ENSMUSG00000114358 ENSMUST00000223786 Gm5200 processed_pseudogene Interval_35824 chr12 30647020 30647224 + 0 NA Intergenic Intergenic 60208 ENSMUSG00000043061.10 ENSMUSG00000043061 ENSMUST00000218826 Tmem18 protein_coding Interval_24832 chr11 40045657 40045927 + 0 NA intron (ENSMUSG00000085301.1, intron 2 of 7) lincRNA-intron (ENSMUSG00000085301.1, intron 2 of 7) 37598 ENSMUSG00000085301.1 ENSMUSG00000085301 ENSMUST00000130945 Gm12132 lincRNA Interval_5160 chr1 86128164 86128388 + 0 NA exon (ENSMUSG00000026229.17, exon 20 of 25) protein_coding-exon (ENSMUSG00000026229.17, exon 20 of 25) -5361 ENSMUSG00000094638.1 ENSMUSG00000094638 ENSMUST00000135197 Gm21972 protein_coding Interval_78739 chr18 20012740 20012981 + 0 NA Intergenic Intergenic -10905 ENSMUSG00000059898.9 ENSMUSG00000059898 ENSMUST00000223946 Dsc3 protein_coding Interval_151146 chr7 118811148 118811407 + 0 NA intron (ENSMUSG00000030982.19, intron 22 of 27) protein_coding-intron (ENSMUSG00000030982.19, intron 17 of 23) -14427 ENSMUSG00000030982.19 ENSMUSG00000030982 ENSMUST00000209103 Vps35l protein_coding Interval_110181 chr3 153993753 153993991 + 0 NA intron (ENSMUSG00000028360.10, intron 1 of 21) protein_coding-intron (ENSMUSG00000028360.10, intron 1 of 21) -53051 ENSMUSG00000028360.10 ENSMUSG00000028360 ENSMUST00000144677 Slc44a5 protein_coding Interval_140177 chr6 115017895 115018427 + 0 NA intron (ENSMUSG00000030316.13, intron 2 of 4) protein_coding-intron (ENSMUSG00000030316.13, intron 4 of 7) 19694 ENSMUSG00000030316.13 ENSMUSG00000030316 ENSMUST00000144445 Tamm41 protein_coding Interval_128111 chr5 111025184 111025870 + 0 NA intron (ENSMUSG00000033209.17, intron 2 of 22) protein_coding-intron (ENSMUSG00000033209.17, intron 2 of 23) -3025 ENSMUSG00000105890.1 ENSMUSG00000105890 ENSMUST00000197083 Gm42780 TEC Interval_24825 chr11 39946618 39948307 + 0 NA Intergenic Intergenic -60732 ENSMUSG00000085301.1 ENSMUSG00000085301 ENSMUST00000130945 Gm12132 lincRNA Interval_66406 chr16 33694140 33694377 + 0 NA intron (ENSMUSG00000075254.12, intron 1 of 16) protein_coding-intron (ENSMUSG00000075254.12, intron 1 of 16) 9888 ENSMUSG00000075254.12 ENSMUSG00000075254 ENSMUST00000146518 Heg1 protein_coding Interval_172860 chrX 52225948 52226194 + 0 NA Intergenic Intergenic -60819 ENSMUSG00000031119.4 ENSMUSG00000031119 ENSMUST00000033450 Gpc4 protein_coding Interval_111157 chr4 13335295 13335830 + 0 NA Intergenic Intergenic -68512 ENSMUSG00000080359.2 ENSMUSG00000080359 ENSMUST00000116709 Gm26250 miRNA Interval_64618 chr16 13703871 13705456 + 0 NA Intergenic Intergenic -25173 ENSMUSG00000086550.2 ENSMUSG00000086550 ENSMUST00000141172 Pla2g10os antisense Interval_7023 chr1 122539191 122540021 + 0 NA Intergenic Intergenic -13567 ENSMUSG00000089190.1 ENSMUSG00000089190 ENSMUST00000158565 Gm25771 snoRNA Interval_74228 chr17 47588493 47589267 + 0 NA intron (ENSMUSG00000034165.16, intron 2 of 6) protein_coding-intron (ENSMUSG00000034165.16, intron 2 of 6) -7444 ENSMUSG00000034165.16 ENSMUSG00000034165 ENSMUST00000183206 Ccnd3 protein_coding Interval_54968 chr14 76558211 76558448 + 0 NA Intergenic Intergenic -1440 ENSMUSG00000052584.10 ENSMUSG00000052584 ENSMUST00000228524 Serp2 protein_coding Interval_112678 chr4 44028107 44028817 + 0 NA intron (ENSMUSG00000028478.18, intron 4 of 4) protein_coding-intron (ENSMUSG00000028478.18, intron 4 of 4) 15819 ENSMUSG00000028478.18 ENSMUSG00000028478 ENSMUST00000107845 Clta protein_coding Interval_4927 chr1 82719374 82719629 + 0 NA TTS (ENSMUSG00000079465.8) protein_coding-TTS (ENSMUSG00000079465.8) 4197 ENSMUSG00000079465.8 ENSMUSG00000079465 ENSMUST00000152664 Col4a3 protein_coding Interval_64665 chr16 13995177 13995383 + 0 NA intron (ENSMUSG00000044117.12, intron 1 of 3) protein_coding-intron (ENSMUSG00000044117.12, intron 1 of 5) -8392 ENSMUSG00000065968.8 ENSMUSG00000065968 ENSMUST00000178021 Ifitm7 protein_coding Interval_112416 chr4 41129290 41129944 + 0 NA Intergenic Intergenic 3227 ENSMUSG00000081437.1 ENSMUSG00000081437 ENSMUST00000120536 Gm12402 processed_pseudogene Interval_64555 chr16 13270092 13271267 + 0 NA intron (ENSMUSG00000009569.14, intron 2 of 4) protein_coding-intron (ENSMUSG00000009569.14, intron 2 of 16) -87742 ENSMUSG00000009569.14 ENSMUSG00000009569 ENSMUST00000149359 Mrtfb protein_coding Interval_140734 chr6 120926022 120926265 + 0 NA Intergenic Intergenic -11150 ENSMUSG00000107971.1 ENSMUSG00000107971 ENSMUST00000204946 Gm44260 TEC Interval_119554 chr4 138345398 138345597 + 0 NA intron (ENSMUSG00000028755.3, intron 2 of 3) protein_coding-intron (ENSMUSG00000028755.3, intron 2 of 3) -1848 ENSMUSG00000028755.3 ENSMUSG00000028755 ENSMUST00000030535 Cda protein_coding Interval_124255 chr5 42738369 42738858 + 0 NA Intergenic Intergenic 225996 ENSMUSG00000106622.2 ENSMUSG00000106622 ENSMUST00000199726 Gm5554 processed_pseudogene Interval_111412 chr4 21295591 21296062 + 0 NA Intergenic Intergenic 25751 ENSMUSG00000088073.1 ENSMUSG00000088073 ENSMUST00000157448 Gm22817 ribozyme Interval_54782 chr14 75022088 75022343 + 0 NA intron (ENSMUSG00000034959.8, intron 1 of 13) protein_coding-intron (ENSMUSG00000034959.8, intron 1 of 13) -14407 ENSMUSG00000034959.8 ENSMUSG00000034959 ENSMUST00000228689 Rubcnl protein_coding Interval_30230 chr11 91300684 91301024 + 0 NA Intergenic Intergenic 276704 ENSMUSG00000046755.5 ENSMUSG00000046755 ENSMUST00000061019 Kif2b protein_coding Interval_74616 chr17 53803698 53804843 + 0 NA TTS (ENSMUSG00000105885.1) unprocessed_pseudogene-TTS (ENSMUSG00000105885.1) 1410 ENSMUSG00000105885.1 ENSMUSG00000105885 ENSMUST00000196414 Sult1c2-ps2 unprocessed_pseudogene Interval_40789 chr12 108435646 108436591 + 0 NA intron (ENSMUSG00000058070.14, intron 1 of 20) protein_coding-intron (ENSMUSG00000058070.14, intron 1 of 21) 5152 ENSMUSG00000082203.1 ENSMUSG00000082203 ENSMUST00000119205 Gm15636 processed_pseudogene Interval_166691 chr9 61972284 61972534 + 0 NA intron (ENSMUSG00000032278.11, intron 3 of 6) protein_coding-intron (ENSMUSG00000032278.11, intron 4 of 7) -47288 ENSMUSG00000032254.10 ENSMUSG00000032254 ENSMUST00000215404 Kif23 protein_coding Interval_130667 chr5 129606100 129606479 + 0 NA exon (ENSMUSG00000029436.9, exon 10 of 10) protein_coding-exon (ENSMUSG00000029436.9, exon 10 of 10) 9663 ENSMUSG00000029436.9 ENSMUSG00000029436 ENSMUST00000177802 Mmp17 protein_coding Interval_46840 chr13 72210231 72210461 + 0 NA Intergenic Intergenic -139875 ENSMUSG00000113594.1 ENSMUSG00000113594 ENSMUST00000220890 Gm4052 processed_pseudogene Interval_31932 chr11 103934540 103936732 + 0 NA intron (ENSMUSG00000034187.18, intron 1 of 8) protein_coding-intron (ENSMUSG00000034187.18, intron 1 of 20) -43953 ENSMUSG00000062421.13 ENSMUSG00000062421 ENSMUST00000154089 Arf2 protein_coding Interval_148463 chr7 81476805 81477324 + 0 NA TTS (ENSMUSG00000062444.15) protein_coding-TTS (ENSMUSG00000062444.15) 16615 ENSMUSG00000062444.15 ENSMUSG00000062444 ENSMUST00000208911 Ap3b2 protein_coding Interval_173788 chrX 104196473 104197359 + 0 NA intron (ENSMUSG00000046449.15, intron 1 of 4) protein_coding-intron (ENSMUSG00000046449.15, intron 1 of 3) 4269 ENSMUSG00000046449.15 ENSMUSG00000046449 ENSMUST00000056502 Nexmif protein_coding Interval_69892 chr16 97949948 97951864 + 0 NA exon (ENSMUSG00000046962.16, exon 2 of 2) protein_coding-exon (ENSMUSG00000046962.16, exon 2 of 2) 11687 ENSMUSG00000046962.16 ENSMUSG00000046962 ENSMUST00000231560 Zbtb21 protein_coding Interval_141027 chr6 124464146 124465474 + 0 NA promoter-TSS (ENSMUSG00000008153.12) protein_coding-promoter-TSS (ENSMUSG00000008153.12) -1955 ENSMUSG00000118414.1 ENSMUSG00000118414 ENSMUST00000238756 Gm50463 unitary_pseudogene Interval_114804 chr4 85382976 85383641 + 0 NA intron (ENSMUSG00000028488.15, intron 7 of 7) protein_coding-intron (ENSMUSG00000028488.15, intron 7 of 8) 6967 ENSMUSG00000028488.15 ENSMUSG00000028488 ENSMUST00000133109 Sh3gl2 protein_coding Interval_118576 chr4 132594053 132594842 + 0 NA Intergenic Intergenic 30380 ENSMUSG00000056529.7 ENSMUSG00000056529 ENSMUST00000070690 Ptafr protein_coding Interval_7263 chr1 128307469 128307928 + 0 NA exon (ENSMUSG00000026354.8, exon 6 of 17) protein_coding-exon (ENSMUSG00000026354.8, exon 6 of 17) -15434 ENSMUSG00000026354.8 ENSMUSG00000026354 ENSMUST00000162067 Lct protein_coding Interval_74577 chr17 53510193 53511273 + 0 NA intron (ENSMUSG00000044957.3, intron 2 of 2) protein_coding-intron (ENSMUSG00000044957.3, intron 2 of 2) -9787 ENSMUSG00000117128.1 ENSMUSG00000117128 ENSMUST00000232747 Gm49915 antisense Interval_145440 chr7 34758673 34759780 + 0 NA intron (ENSMUSG00000060402.8, intron 1 of 2) protein_coding-intron (ENSMUSG00000060402.8, intron 1 of 3) -5414 ENSMUSG00000060402.8 ENSMUSG00000060402 ENSMUST00000205390 Chst8 protein_coding Interval_97846 chr2 144406000 144406900 + 0 NA intron (ENSMUSG00000027425.18, intron 2 of 2) protein_coding-intron (ENSMUSG00000027425.18, intron 10 of 10) 37454 ENSMUSG00000098387.2 ENSMUSG00000098387 ENSMUST00000183618 Pet117 protein_coding Interval_8531 chr1 140842511 140843225 + 0 NA Intergenic Intergenic 19541 ENSMUSG00000102500.1 ENSMUSG00000102500 ENSMUST00000194837 Gm37371 TEC Interval_57634 chr15 12993526 12993740 + 0 NA Intergenic Intergenic 12804 ENSMUSG00000089564.1 ENSMUSG00000089564 ENSMUST00000158939 Gm24664 rRNA Interval_69641 chr16 94788085 94788585 + 0 NA intron (ENSMUSG00000043301.16, intron 3 of 3) protein_coding-intron (ENSMUSG00000043301.16, intron 3 of 4) 66441 ENSMUSG00000116641.1 ENSMUSG00000116641 ENSMUST00000232585 Gm41505 antisense Interval_60608 chr15 75651116 75651312 + 0 NA intron (ENSMUSG00000099034.7, intron 4 of 4) transcribed_unitary_pseudogene-intron (ENSMUSG00000099034.7, intron 4 of 4) 7728 ENSMUSG00000099034.7 ENSMUSG00000099034 ENSMUST00000184665 2810039B14Rik transcribed_unitary_pseudogene Interval_105771 chr3 89250508 89252443 + 0 NA Intergenic Intergenic 5041 ENSMUSG00000042747.12 ENSMUSG00000042747 ENSMUST00000132818 Krtcap2 protein_coding Interval_47938 chr13 94511882 94512842 + 0 NA intron (ENSMUSG00000021686.6, intron 6 of 11) protein_coding-intron (ENSMUSG00000021686.6, intron 22 of 26) -4800 ENSMUSG00000084423.1 ENSMUSG00000084423 ENSMUST00000122474 Gm25109 miRNA Interval_138668 chr6 91000787 91001794 + 0 NA Intergenic Intergenic 95471 ENSMUSG00000099662.1 ENSMUSG00000099662 ENSMUST00000117103 Ppp1r2-ps2 processed_pseudogene Interval_64763 chr16 15551480 15551908 + 0 NA TTS (ENSMUSG00000022674.15) protein_coding-TTS (ENSMUSG00000022674.15) -35671 ENSMUSG00000116386.1 ENSMUSG00000116386 ENSMUST00000229197 Gm49538 processed_pseudogene Interval_139017 chr6 94215294 94215557 + 0 NA intron (ENSMUSG00000045095.16, intron 2 of 2) protein_coding-intron (ENSMUSG00000045095.16, intron 1 of 21) 108609 ENSMUSG00000107545.1 ENSMUSG00000107545 ENSMUST00000204466 Gm44307 processed_pseudogene Interval_20429 chr10 117571207 117571933 + 0 NA Intergenic Intergenic 12446 ENSMUSG00000112399.1 ENSMUSG00000112399 ENSMUST00000220286 Gm32235 lincRNA Interval_93456 chr2 73170622 73171649 + 0 NA intron (ENSMUSG00000027108.15, intron 3 of 9) protein_coding-intron (ENSMUSG00000027108.15, intron 4 of 10) -5476 ENSMUSG00000083976.1 ENSMUSG00000083976 ENSMUST00000117304 Gm13664 processed_pseudogene Interval_37288 chr12 64829326 64830278 + 0 NA Intergenic Intergenic 12987 ENSMUSG00000114029.1 ENSMUSG00000114029 ENSMUST00000222704 Gm4806 processed_pseudogene Interval_156170 chr8 45440875 45441067 + 0 NA Intergenic Intergenic -30353 ENSMUSG00000031639.12 ENSMUSG00000031639 ENSMUST00000210354 Tlr3 protein_coding Interval_119018 chr4 135032113 135033604 + 0 NA Intergenic Intergenic 87589 ENSMUSG00000086884.1 ENSMUSG00000086884 ENSMUST00000146152 Gm16225 lincRNA Interval_129695 chr5 121815046 121815454 + 0 NA TTS (ENSMUSG00000042605.16) protein_coding-TTS (ENSMUSG00000042605.16) 4023 ENSMUSG00000099063.1 ENSMUSG00000099063 ENSMUST00000183860 Mir7031 miRNA Interval_165870 chr9 53984823 53985586 + 0 NA Intergenic Intergenic -58108 ENSMUSG00000111379.1 ENSMUSG00000111379 ENSMUST00000217574 Gm48346 lincRNA Interval_145231 chr7 30805668 30806445 + 0 NA Intergenic Intergenic 14921 ENSMUSG00000051314.11 ENSMUSG00000051314 ENSMUST00000186059 Ffar2 protein_coding Interval_96333 chr2 121710374 121710609 + 0 NA intron (ENSMUSG00000027238.17, intron 1 of 7) protein_coding-intron (ENSMUSG00000027238.17, intron 1 of 13) -8039 ENSMUSG00000084244.1 ENSMUSG00000084244 ENSMUST00000118165 Gm14020 processed_pseudogene Interval_92170 chr2 55249487 55249804 + 0 NA Intergenic Intergenic -42420 ENSMUSG00000082301.1 ENSMUSG00000082301 ENSMUST00000117686 Gm14032 processed_pseudogene Interval_58808 chr15 38197712 38200602 + 0 NA intron (ENSMUSG00000115680.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000115680.1, intron 1 of 2) 3060 ENSMUSG00000115680.1 ENSMUSG00000115680 ENSMUST00000227576 Gm35167 lincRNA Interval_159419 chr8 94485872 94486376 + 0 NA intron (ENSMUSG00000074151.13, intron 15 of 52) protein_coding-intron (ENSMUSG00000074151.13, intron 11 of 48) -18922 ENSMUSG00000098511.1 ENSMUSG00000098511 ENSMUST00000184542 Mir7072 miRNA Interval_87276 chr19 47343050 47344107 + 0 NA intron (ENSMUSG00000053617.12, intron 5 of 13) protein_coding-intron (ENSMUSG00000053617.12, intron 5 of 14) 66781 ENSMUSG00000053617.12 ENSMUSG00000053617 ENSMUST00000237828 Sh3pxd2a protein_coding Interval_141902 chr6 135236726 135238696 + 0 NA exon (ENSMUSG00000030206.13, exon 6 of 6) protein_coding-exon (ENSMUSG00000030206.13, exon 6 of 6) 6110 ENSMUSG00000030207.15 ENSMUSG00000030207 ENSMUST00000151951 Fam234b protein_coding Interval_100977 chr2 173779004 173779412 + 0 NA exon (ENSMUSG00000054455.5, exon 6 of 6) protein_coding-exon (ENSMUSG00000054455.5, exon 6 of 6) 11008 ENSMUSG00000054455.5 ENSMUSG00000054455 ENSMUST00000154306 Vapb protein_coding Interval_104248 chr3 61858864 61859079 + 0 NA Intergenic Intergenic 210823 ENSMUSG00000104489.1 ENSMUSG00000104489 ENSMUST00000193786 Gm9700 processed_pseudogene Interval_69658 chr16 94972277 94972717 + 0 NA intron (ENSMUSG00000043301.16, intron 1 of 2) protein_coding-intron (ENSMUSG00000043301.16, intron 1 of 4) 103033 ENSMUSG00000095435.1 ENSMUSG00000095435 ENSMUST00000175509 Gm22745 miRNA Interval_96741 chr2 127604778 127606100 + 0 NA TTS (ENSMUSG00000027374.12) protein_coding-TTS (ENSMUSG00000027374.12) 14998 ENSMUSG00000027374.12 ENSMUSG00000027374 ENSMUST00000129066 Mrps5 protein_coding Interval_20612 chr10 119460414 119460907 + 0 NA intron (ENSMUSG00000034813.18, intron 1 of 21) protein_coding-intron (ENSMUSG00000034813.18, intron 1 of 22) -1690 ENSMUSG00000112741.1 ENSMUSG00000112741 ENSMUST00000219716 Gm47341 TEC Interval_80277 chr18 38713921 38714410 + 0 NA promoter-TSS (ENSMUSG00000099488.1) processed_pseudogene-promoter-TSS (ENSMUSG00000099488.1) -235 ENSMUSG00000099488.1 ENSMUSG00000099488 ENSMUST00000190667 Gm19774 processed_pseudogene Interval_7171 chr1 127442269 127443664 + 0 NA intron (ENSMUSG00000036155.13, intron 10 of 15) protein_coding-intron (ENSMUSG00000036155.13, intron 12 of 17) 36190 ENSMUSG00000103390.1 ENSMUSG00000103390 ENSMUST00000195573 Gm38301 TEC Interval_27299 chr11 65715644 65715841 + 0 NA intron (ENSMUSG00000033352.11, intron 5 of 5) protein_coding-intron (ENSMUSG00000033352.11, intron 4 of 10) 19090 ENSMUSG00000076460.1 ENSMUSG00000076460 ENSMUST00000103261 Mir744 miRNA Interval_98839 chr2 155467036 155467346 + 0 NA intron (ENSMUSG00000038369.14, intron 1 of 15) protein_coding-intron (ENSMUSG00000038369.14, intron 1 of 15) -6299 ENSMUSG00000080237.2 ENSMUSG00000080237 ENSMUST00000116491 Gm14239 processed_pseudogene Interval_10885 chr1 176620451 176621816 + 0 NA Intergenic Intergenic 21425 ENSMUSG00000103471.1 ENSMUSG00000103471 ENSMUST00000193453 Gm17966 processed_pseudogene Interval_14034 chr10 25790213 25790415 + 0 NA intron (ENSMUSG00000112444.1, intron 2 of 4) lincRNA-intron (ENSMUSG00000112444.1, intron 2 of 4) -40820 ENSMUSG00000112491.1 ENSMUSG00000112491 ENSMUST00000218231 Gm19801 processed_pseudogene Interval_14883 chr10 40816322 40817081 + 0 NA Intergenic Intergenic 29236 ENSMUSG00000038446.8 ENSMUSG00000038446 ENSMUST00000215441 Cdc40 protein_coding Interval_48324 chr13 98196486 98196943 + 0 NA intron (ENSMUSG00000021662.11, intron 1 of 34) protein_coding-intron (ENSMUSG00000021662.11, intron 1 of 35) 57443 ENSMUSG00000041747.3 ENSMUSG00000041747 ENSMUST00000224842 Utp15 protein_coding Interval_165090 chr9 44505769 44506474 + 0 NA exon (ENSMUSG00000063382.6, exon 7 of 9) protein_coding-exon (ENSMUSG00000063382.6, exon 7 of 9) 20461 ENSMUSG00000047880.15 ENSMUSG00000047880 ENSMUST00000213357 Cxcr5 protein_coding Interval_8610 chr1 143813719 143814567 + 0 NA Intergenic Intergenic 19468 ENSMUSG00000018189.12 ENSMUSG00000018189 ENSMUST00000185539 Uchl5 protein_coding Interval_42461 chr13 13783546 13785729 + 0 NA exon (ENSMUSG00000021303.14, exon 1 of 4) protein_coding-exon (ENSMUSG00000021303.14, exon 1 of 4) -4707 ENSMUSG00000087898.1 ENSMUSG00000087898 ENSMUST00000157273 Gm25271 misc_RNA Interval_39019 chr12 84504384 84504621 + 0 NA intron (ENSMUSG00000085793.2, intron 4 of 4) protein_coding-intron (ENSMUSG00000085793.2, intron 5 of 5) -25542 ENSMUSG00000085793.2 ENSMUSG00000085793 ENSMUST00000222741 Lin52 protein_coding Interval_102620 chr3 28564592 28564899 + 0 NA intron (ENSMUSG00000027692.16, intron 10 of 30) protein_coding-intron (ENSMUSG00000027692.16, intron 10 of 30) 144802 ENSMUSG00000092990.1 ENSMUSG00000092990 ENSMUST00000175249 Mir466q miRNA Interval_38604 chr12 80462494 80464018 + 0 NA promoter-TSS (ENSMUSG00000032705.9) protein_coding-promoter-TSS (ENSMUSG00000032705.9) -27634 ENSMUSG00000032705.9 ENSMUSG00000032705 ENSMUST00000219757 Exd2 protein_coding Interval_48393 chr13 98721895 98723209 + 0 NA TTS (ENSMUSG00000041685.16) protein_coding-TTS (ENSMUSG00000041685.16) -6042 ENSMUSG00000114689.1 ENSMUSG00000114689 ENSMUST00000224536 Gm9465 lincRNA Interval_48753 chr13 102749862 102751021 + 0 NA intron (ENSMUSG00000034751.17, intron 25 of 27) protein_coding-intron (ENSMUSG00000034751.17, intron 25 of 27) -9814 ENSMUSG00000091906.2 ENSMUSG00000091906 ENSMUST00000167834 1700099I09Rik antisense Interval_101688 chr3 8957788 8958029 + 0 NA intron (ENSMUSG00000027506.15, intron 1 of 5) protein_coding-intron (ENSMUSG00000027506.15, intron 1 of 6) -33990 ENSMUSG00000040269.5 ENSMUSG00000040269 ENSMUST00000042148 Mrps28 protein_coding Interval_21976 chr11 5505822 5506959 + 0 NA TTS (ENSMUSG00000085189.1) antisense-TTS (ENSMUSG00000085189.1) 7550 ENSMUSG00000085189.1 ENSMUSG00000085189 ENSMUST00000149826 Gm11963 antisense Interval_126943 chr5 97934997 97936047 + 0 NA intron (ENSMUSG00000029338.13, intron 16 of 17) protein_coding-intron (ENSMUSG00000029338.13, intron 16 of 16) 60573 ENSMUSG00000029338.13 ENSMUSG00000029338 ENSMUST00000202736 Antxr2 protein_coding Interval_54199 chr14 66187278 66187807 + 0 NA intron (ENSMUSG00000059456.13, intron 3 of 29) protein_coding-intron (ENSMUSG00000059456.13, intron 4 of 30) 26010 ENSMUSG00000059456.13 ENSMUSG00000059456 ENSMUST00000127083 Ptk2b protein_coding Interval_154340 chr8 14842169 14842684 + 0 NA intron (ENSMUSG00000047495.15, intron 13 of 14) protein_coding-intron (ENSMUSG00000047495.15, intron 13 of 14) -46578 ENSMUSG00000026317.7 ENSMUSG00000026317 ENSMUST00000128839 Cln8 protein_coding Interval_72455 chr17 29913421 29914062 + 0 NA intron (ENSMUSG00000043557.16, intron 3 of 20) protein_coding-intron (ENSMUSG00000043557.16, intron 3 of 20) 23657 ENSMUSG00000086534.2 ENSMUSG00000086534 ENSMUST00000149552 Gm16758 antisense Interval_110801 chr4 8522820 8523059 + 0 NA Intergenic Intergenic -12705 ENSMUSG00000047187.9 ENSMUSG00000047187 ENSMUST00000060232 Rab2a protein_coding Interval_17245 chr10 75252107 75252828 + 0 NA intron (ENSMUSG00000033444.14, intron 5 of 15) protein_coding-intron (ENSMUSG00000033444.14, intron 5 of 15) -8500 ENSMUSG00000033444.14 ENSMUSG00000033444 ENSMUST00000218644 Specc1l protein_coding Interval_91523 chr2 40802977 40803180 + 0 NA intron (ENSMUSG00000049252.17, intron 61 of 62) protein_coding-intron (ENSMUSG00000049252.17, intron 64 of 90) -155313 ENSMUSG00000082930.1 ENSMUSG00000082930 ENSMUST00000121472 Gm13462 processed_pseudogene Interval_156122 chr8 44959114 44961134 + 0 NA intron (ENSMUSG00000070047.14, intron 1 of 28) protein_coding-intron (ENSMUSG00000070047.14, intron 1 of 25) 9910 ENSMUSG00000070047.14 ENSMUSG00000070047 ENSMUST00000189367 Fat1 protein_coding Interval_47320 chr13 81289119 81289541 + 0 NA intron (ENSMUSG00000069170.14, intron 21 of 27) protein_coding-intron (ENSMUSG00000069170.14, intron 83 of 89) -48546 ENSMUSG00000114939.1 ENSMUSG00000114939 ENSMUST00000225657 Gm48566 TEC Interval_160879 chr8 114477284 114478339 + 0 NA intron (ENSMUSG00000004637.15, intron 1 of 2) protein_coding-intron (ENSMUSG00000004637.15, intron 4 of 8) 59725 ENSMUSG00000008874.3 ENSMUSG00000008874 ENSMUST00000009018 Clec3a protein_coding Interval_84529 chr19 12286618 12287163 + 0 NA Intergenic Intergenic 3416 ENSMUSG00000109433.1 ENSMUSG00000109433 ENSMUST00000207773 Olfr1435-ps1 unprocessed_pseudogene Interval_173458 chrX 94122028 94123668 + 0 NA promoter-TSS (ENSMUSG00000079509.10) protein_coding-promoter-TSS (ENSMUSG00000079509.10) 527 ENSMUSG00000079509.10 ENSMUSG00000079509 ENSMUST00000130312 Zfx protein_coding Interval_54442 chr14 69793781 69794220 + 0 NA exon (ENSMUSG00000022075.7, exon 7 of 10) protein_coding-exon (ENSMUSG00000022075.7, exon 7 of 10) 11225 ENSMUSG00000022075.7 ENSMUSG00000022075 ENSMUST00000225088 Rhobtb2 protein_coding Interval_13528 chr10 19185727 19186435 + 0 NA intron (ENSMUSG00000111052.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000111052.1, intron 2 of 3) 18843 ENSMUSG00000111052.1 ENSMUSG00000111052 ENSMUST00000216683 Gm20139 lincRNA Interval_110402 chr3 157804301 157804584 + 0 NA Intergenic Intergenic 13353 ENSMUSG00000106419.1 ENSMUSG00000106419 ENSMUST00000198658 Gm5550 processed_pseudogene Interval_63189 chr15 99636641 99637684 + 0 NA TTS (ENSMUSG00000023015.14) protein_coding-TTS (ENSMUSG00000023015.14) 14450 ENSMUSG00000023015.14 ENSMUSG00000023015 ENSMUST00000109581 Racgap1 protein_coding Interval_61886 chr15 84939465 84940539 + 0 NA TTS (ENSMUSG00000016619.10) protein_coding-TTS (ENSMUSG00000016619.10) 11621 ENSMUSG00000080441.1 ENSMUSG00000080441 ENSMUST00000116791 Mir1249 miRNA Interval_163237 chr9 19056711 19056913 + 0 NA Intergenic Intergenic 24077 ENSMUSG00000045204.4 ENSMUSG00000045204 ENSMUST00000059315 Olfr835 protein_coding Interval_79113 chr18 24670159 24670528 + 0 NA intron (ENSMUSG00000039616.10, intron 4 of 11) protein_coding-intron (ENSMUSG00000039616.10, intron 4 of 14) 15939 ENSMUSG00000084472.1 ENSMUSG00000084472 ENSMUST00000122523 n-R5s23 rRNA Interval_126419 chr5 88347180 88349570 + 0 NA Intergenic Intergenic -27733 ENSMUSG00000029282.3 ENSMUSG00000029282 ENSMUST00000073363 Amtn protein_coding Interval_13025 chr10 9576877 9577079 + 0 NA Intergenic Intergenic 10602 ENSMUSG00000112700.1 ENSMUSG00000112700 ENSMUST00000218493 Gm48757 lincRNA Interval_66704 chr16 36480660 36481382 + 0 NA Intergenic Intergenic -7180 ENSMUSG00000116917.1 ENSMUSG00000116917 ENSMUST00000231458 Gm49653 TEC Interval_157715 chr8 72483534 72483826 + 0 NA TTS (ENSMUSG00000019731.13) protein_coding-TTS (ENSMUSG00000019731.13) -8454 ENSMUSG00000052488.7 ENSMUSG00000052488 ENSMUST00000212586 Cherp protein_coding Interval_14016 chr10 25499502 25500320 + 0 NA exon (ENSMUSG00000019978.16, exon 2 of 5) protein_coding-exon (ENSMUSG00000019978.16, exon 2 of 5) 5288 ENSMUSG00000019978.16 ENSMUSG00000019978 ENSMUST00000219201 Epb41l2 protein_coding Interval_105855 chr3 89730386 89731544 + 0 NA intron (ENSMUSG00000027951.16, intron 1 of 13) protein_coding-intron (ENSMUSG00000027951.16, intron 1 of 14) 15943 ENSMUSG00000027951.16 ENSMUSG00000027951 ENSMUST00000131030 Adar protein_coding Interval_107924 chr3 116877089 116877477 + 0 NA promoter-TSS (ENSMUSG00000033386.10) protein_coding-promoter-TSS (ENSMUSG00000033386.10) 17716 ENSMUSG00000033386.10 ENSMUSG00000033386 ENSMUST00000199030 Frrs1 protein_coding Interval_75640 chr17 69656568 69656820 + 0 NA Intergenic Intergenic -61917 ENSMUSG00000088581.1 ENSMUSG00000088581 ENSMUST00000157956 Gm22967 misc_RNA Interval_144423 chr7 25072853 25073182 + 0 NA promoter-TSS (ENSMUSG00000003378.9) protein_coding-promoter-TSS (ENSMUSG00000003378.9) 450 ENSMUSG00000045252.11 ENSMUSG00000045252 ENSMUST00000053410 Zfp574 protein_coding Interval_49970 chr13 119103918 119104719 + 0 NA Intergenic Intergenic 165286 ENSMUSG00000105411.1 ENSMUSG00000105411 ENSMUST00000199467 Gm44488 miRNA Interval_154390 chr8 15388677 15389579 + 0 NA Intergenic Intergenic 13489 ENSMUSG00000109748.1 ENSMUSG00000109748 ENSMUST00000209934 Gm35392 lincRNA Interval_10967 chr1 177642804 177643659 + 0 NA promoter-TSS (ENSMUSG00000101746.1) lincRNA-promoter-TSS (ENSMUSG00000101746.1) -288 ENSMUSG00000101746.1 ENSMUSG00000101746 ENSMUST00000189507 2310043L19Rik lincRNA Interval_249 KZ289068.1 308690 309108 + 0 NA NA NA NA NA Interval_168852 chr9 88071201 88071645 + 0 NA Intergenic Intergenic -31731 ENSMUSG00000099584.1 ENSMUSG00000099584 ENSMUST00000191349 Gm28877 processed_pseudogene Interval_104268 chr3 62452542 62453268 + 0 NA intron (ENSMUSG00000036885.14, intron 6 of 7) protein_coding-intron (ENSMUSG00000036885.14, intron 11 of 13) 25725 ENSMUSG00000036885.14 ENSMUSG00000036885 ENSMUST00000192138 Arhgef26 protein_coding Interval_117158 chr4 120129460 120130061 + 0 NA intron (ENSMUSG00000028634.17, intron 4 of 5) protein_coding-intron (ENSMUSG00000028634.17, intron 7 of 8) -31446 ENSMUSG00000028635.7 ENSMUSG00000028635 ENSMUST00000030384 Edn2 protein_coding Interval_14897 chr10 40913375 40913613 + 0 NA intron (ENSMUSG00000019831.14, intron 1 of 8) protein_coding-intron (ENSMUSG00000019831.14, intron 1 of 8) 29667 ENSMUSG00000019831.14 ENSMUSG00000019831 ENSMUST00000105509 Wasf1 protein_coding Interval_39197 chr12 85757227 85757666 + 0 NA intron (ENSMUSG00000034258.4, intron 1 of 9) protein_coding-intron (ENSMUSG00000034258.4, intron 1 of 9) -17384 ENSMUSG00000034258.4 ENSMUSG00000034258 ENSMUST00000221585 Flvcr2 protein_coding Interval_68966 chr16 89788892 89790019 + 0 NA exon (ENSMUSG00000002489.16, exon 28 of 28) protein_coding-exon (ENSMUSG00000002489.16, exon 28 of 28) 5827 ENSMUSG00000002489.16 ENSMUSG00000002489 ENSMUST00000136760 Tiam1 protein_coding Interval_79220 chr18 25780598 25781157 + 0 NA Intergenic Intergenic 43480 ENSMUSG00000087121.1 ENSMUSG00000087121 ENSMUST00000151645 Gm7847 processed_pseudogene Interval_149007 chr7 91625203 91625473 + 0 NA intron (ENSMUSG00000052572.19, intron 1 of 3) protein_coding-intron (ENSMUSG00000052572.19, intron 2 of 22) -1934 ENSMUSG00000109505.1 ENSMUSG00000109505 ENSMUST00000209151 Gm44677 TEC Interval_149665 chr7 100500439 100503426 + 0 NA TTS (ENSMUSG00000033685.13) protein_coding-TTS (ENSMUSG00000033685.13) 8578 ENSMUSG00000033685.13 ENSMUSG00000033685 ENSMUST00000149808 Ucp2 protein_coding Interval_33493 chr11 116875844 116876076 + 0 NA TTS (ENSMUSG00000020818.16) protein_coding-TTS (ENSMUSG00000020818.16) 21882 ENSMUSG00000020818.16 ENSMUSG00000020818 ENSMUST00000134106 Mfsd11 protein_coding Interval_139284 chr6 97865969 97866140 + 0 NA intron (ENSMUSG00000035158.15, intron 1 of 9) protein_coding-intron (ENSMUSG00000035158.15, intron 1 of 9) 24485 ENSMUSG00000083086.1 ENSMUSG00000083086 ENSMUST00000118062 Gm15531 processed_pseudogene Interval_2967 chr1 51704303 51704580 + 0 NA intron (ENSMUSG00000101741.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000101741.1, intron 1 of 1) -6541 ENSMUSG00000101741.1 ENSMUSG00000101741 ENSMUST00000186769 Gm28055 lincRNA Interval_141314 chr6 127122241 127122728 + 0 NA promoter-TSS (ENSMUSG00000107379.1) antisense-promoter-TSS (ENSMUSG00000107379.1) -482 ENSMUSG00000107379.1 ENSMUSG00000107379 ENSMUST00000201546 Gm43126 antisense Interval_44591 chr13 46561422 46561636 + 0 NA intron (ENSMUSG00000021373.16, intron 4 of 9) protein_coding-intron (ENSMUSG00000021373.16, intron 4 of 12) 42845 ENSMUSG00000087913.1 ENSMUSG00000087913 ENSMUST00000157288 Gm24915 rRNA Interval_115333 chr4 96742095 96742962 + 0 NA intron (ENSMUSG00000078639.1, intron 7 of 10) protein_coding-intron (ENSMUSG00000078639.1, intron 7 of 10) 42658 ENSMUSG00000078639.1 ENSMUSG00000078639 ENSMUST00000107071 Gm12695 protein_coding Interval_107370 chr3 106922716 106923363 + 0 NA Intergenic Intergenic -43678 ENSMUSG00000105102.1 ENSMUSG00000105102 ENSMUST00000197932 Gm35507 lincRNA Interval_85908 chr19 32915321 32915527 + 0 NA Intergenic Intergenic 54884 ENSMUSG00000084512.1 ENSMUSG00000084512 ENSMUST00000122563 Gm22482 misc_RNA Interval_64279 chr16 10187287 10187581 + 0 NA intron (ENSMUSG00000115943.1, intron 1 of 1) antisense-intron (ENSMUSG00000115943.1, intron 1 of 1) 17208 ENSMUSG00000039209.12 ENSMUSG00000039209 ENSMUST00000044103 Rpl39l protein_coding Interval_13292 chr10 14269414 14271019 + 0 NA Intergenic Intergenic -26747 ENSMUSG00000112679.1 ENSMUSG00000112679 ENSMUST00000219975 Gm40603 lincRNA Interval_100358 chr2 168626405 168626731 + 0 NA Intergenic Intergenic 14191 ENSMUSG00000105496.1 ENSMUSG00000105496 ENSMUST00000200215 Mir7004 miRNA Interval_70331 chr17 8541865 8542960 + 0 NA intron (ENSMUSG00000023868.17, intron 1 of 3) protein_coding-intron (ENSMUSG00000023868.17, intron 1 of 21) 24538 ENSMUSG00000099104.1 ENSMUSG00000099104 ENSMUST00000184183 Gm17087 protein_coding Interval_65543 chr16 23196867 23197592 + 0 NA exon (ENSMUSG00000081988.1, exon 1 of 1) processed_pseudogene-exon (ENSMUSG00000081988.1, exon 1 of 1) 892 ENSMUSG00000081988.1 ENSMUSG00000081988 ENSMUST00000120684 Gm15746 processed_pseudogene Interval_141722 chr6 134034655 134036346 + 0 NA promoter-TSS (ENSMUSG00000030199.16) protein_coding-promoter-TSS (ENSMUSG00000030199.16) -37854 ENSMUSG00000108214.1 ENSMUSG00000108214 ENSMUST00000204995 Gm43982 TEC Interval_102348 chr3 22090364 22090625 + 0 NA intron (ENSMUSG00000027630.13, intron 2 of 16) protein_coding-intron (ENSMUSG00000027630.13, intron 1 of 15) -9379 ENSMUSG00000103293.1 ENSMUSG00000103293 ENSMUST00000195073 Gm5842 processed_pseudogene Interval_158691 chr8 85298925 85300460 + 0 NA promoter-TSS (ENSMUSG00000031697.12) protein_coding-promoter-TSS (ENSMUSG00000031697.12) 60 ENSMUSG00000031697.12 ENSMUSG00000031697 ENSMUST00000210458 Orc6 protein_coding Interval_80121 chr18 37736796 37737636 + 0 NA promoter-TSS (ENSMUSG00000102440.1) protein_coding-promoter-TSS (ENSMUSG00000102440.1) -153 ENSMUSG00000102440.1 ENSMUSG00000102440 ENSMUST00000194814 Pcdhga9 protein_coding Interval_27097 chr11 62872896 62873754 + 0 NA intron (ENSMUSG00000090173.8, intron 10 of 12) protein_coding-intron (ENSMUSG00000090173.8, intron 11 of 13) -6289 ENSMUSG00000014177.10 ENSMUSG00000014177 ENSMUST00000140377 Tvp23b protein_coding Interval_99719 chr2 164476718 164477150 + 0 NA intron (ENSMUSG00000045503.16, intron 4 of 4) protein_coding-intron (ENSMUSG00000045503.16, intron 4 of 4) -3210 ENSMUSG00000017720.2 ENSMUSG00000017720 ENSMUST00000017864 Trp53tg5 protein_coding Interval_70179 chr17 5987210 5988372 + 0 NA promoter-TSS (ENSMUSG00000023805.17) protein_coding-promoter-TSS (ENSMUSG00000023805.17) -20243 ENSMUSG00000023805.17 ENSMUSG00000023805 ENSMUST00000126881 Synj2 protein_coding Interval_34863 chr12 12802032 12804309 + 0 NA Intergenic Intergenic 15185 ENSMUSG00000091430.1 ENSMUSG00000091430 ENSMUST00000171380 Platr19 lincRNA Interval_69226 chr16 91506727 91507309 + 0 NA TTS (ENSMUSG00000022967.13) protein_coding-TTS (ENSMUSG00000022967.13) 7615 ENSMUSG00000084301.1 ENSMUSG00000084301 ENSMUST00000117514 Gm7856 processed_pseudogene Interval_135761 chr6 47089562 47090072 + 0 NA intron (ENSMUSG00000039419.17, intron 2 of 2) protein_coding-intron (ENSMUSG00000039419.17, intron 18 of 23) 44661 ENSMUSG00000107952.1 ENSMUSG00000107952 ENSMUST00000203583 Gm6352 processed_pseudogene Interval_160713 chr8 111760148 111761022 + 0 NA Intergenic Intergenic -28449 ENSMUSG00000031955.10 ENSMUSG00000031955 ENSMUST00000212147 Bcar1 protein_coding Interval_72900 chr17 33032784 33033738 + 0 NA promoter-TSS (ENSMUSG00000067430.7) protein_coding-promoter-TSS (ENSMUSG00000067430.7) -93 ENSMUSG00000067430.7 ENSMUSG00000067430 ENSMUST00000124465 Zfp763 protein_coding Interval_101215 chr2 179541609 179542155 + 0 NA intron (ENSMUSG00000000305.12, intron 2 of 2) protein_coding-intron (ENSMUSG00000000305.12, intron 2 of 15) 71685 ENSMUSG00000083410.1 ENSMUSG00000083410 ENSMUST00000120800 Gm14300 processed_pseudogene Interval_50496 chr14 14072758 14073031 + 0 NA intron (ENSMUSG00000021738.5, intron 5 of 12) protein_coding-intron (ENSMUSG00000021738.5, intron 4 of 11) 47212 ENSMUSG00000021737.4 ENSMUSG00000021737 ENSMUST00000147471 Psmd6 protein_coding Interval_143503 chr7 10991284 10992905 + 0 NA intron (ENSMUSG00000110186.1, intron 2 of 4) transcribed_unprocessed_pseudogene-intron (ENSMUSG00000110186.1, intron 2 of 4) 4268 ENSMUSG00000110186.1 ENSMUSG00000110186 ENSMUST00000211273 Gm7789 transcribed_unprocessed_pseudogene Interval_84259 chr19 9061549 9061857 + 0 NA intron (ENSMUSG00000069833.13, intron 5 of 5) protein_coding-intron (ENSMUSG00000069833.13, intron 5 of 5) 26255 ENSMUSG00000024653.2 ENSMUSG00000024653 ENSMUST00000025554 Scgb1a1 protein_coding Interval_62469 chr15 93249497 93249992 + 0 NA intron (ENSMUSG00000036197.16, intron 4 of 6) protein_coding-intron (ENSMUSG00000036197.16, intron 4 of 7) 15381 ENSMUSG00000065911.1 ENSMUSG00000065911 ENSMUST00000083977 Gm24447 misc_RNA Interval_45463 chr13 55276677 55277822 + 0 NA intron (ENSMUSG00000021488.8, intron 8 of 20) protein_coding-intron (ENSMUSG00000021488.8, intron 10 of 22) -22848 ENSMUSG00000114359.1 ENSMUSG00000114359 ENSMUST00000224833 Gm47816 processed_pseudogene Interval_157524 chr8 71201891 71202406 + 0 NA Intergenic Intergenic -21801 ENSMUSG00000110664.1 ENSMUSG00000110664 ENSMUST00000212311 Aprt-ps processed_pseudogene Interval_162502 chr9 3378941 3379387 + 0 NA promoter-TSS (ENSMUSG00000025899.14) protein_coding-promoter-TSS (ENSMUSG00000025899.14) -43 ENSMUSG00000025899.14 ENSMUSG00000025899 ENSMUST00000212955 Alkbh8 protein_coding Interval_81407 chr18 60581316 60582129 + 0 NA intron (ENSMUSG00000049173.8, intron 2 of 6) protein_coding-intron (ENSMUSG00000049173.8, intron 2 of 6) 10066 ENSMUSG00000049173.8 ENSMUSG00000049173 ENSMUST00000056533 Myoz3 protein_coding Interval_114915 chr4 86911216 86912428 + 0 NA intron (ENSMUSG00000038007.14, intron 5 of 5) protein_coding-intron (ENSMUSG00000038007.14, intron 5 of 5) -18869 ENSMUSG00000038007.14 ENSMUSG00000038007 ENSMUST00000135874 Acer2 protein_coding Interval_25142 chr11 44518239 44520723 + 0 NA promoter-TSS (ENSMUSG00000019189.13) protein_coding-promoter-TSS (ENSMUSG00000019189.13) -37350 ENSMUSG00000019189.13 ENSMUSG00000019189 ENSMUST00000129676 Rnf145 protein_coding Interval_119870 chr4 140608095 140609003 + 0 NA intron (ENSMUSG00000040964.16, intron 3 of 4) protein_coding-intron (ENSMUSG00000040964.16, intron 4 of 27) 8516 ENSMUSG00000040964.16 ENSMUSG00000040964 ENSMUST00000154979 Arhgef10l protein_coding Interval_106308 chr3 95274682 95275423 + 0 NA intron (ENSMUSG00000015711.8, intron 1 of 7) protein_coding-intron (ENSMUSG00000015711.8, intron 1 of 7) -6108 ENSMUSG00000015711.8 ENSMUSG00000015711 ENSMUST00000148959 Prune1 protein_coding Interval_166235 chr9 57659875 57660552 + 0 NA Intergenic Intergenic 21823 ENSMUSG00000032310.4 ENSMUSG00000032310 ENSMUST00000215792 Cyp1a2 protein_coding Interval_2451 chr1 39455484 39457052 + 0 NA intron (ENSMUSG00000003134.10, intron 1 of 18) protein_coding-intron (ENSMUSG00000003134.10, intron 1 of 19) -36336 ENSMUSG00000102607.1 ENSMUSG00000102607 ENSMUST00000191698 Gm37265 TEC Interval_145385 chr7 34357821 34358662 + 0 NA intron (ENSMUSG00000066568.12, intron 4 of 9) protein_coding-intron (ENSMUSG00000066568.12, intron 4 of 10) -4746 ENSMUSG00000066568.12 ENSMUSG00000066568 ENSMUST00000206715 Lsm14a protein_coding Interval_82390 chr18 73626531 73627513 + 0 NA Intergenic Intergenic 2094 ENSMUSG00000076941.1 ENSMUSG00000076941 ENSMUST00000103753 Gm22065 miRNA Interval_26089 chr11 54080397 54080701 + 0 NA Intergenic Intergenic -15981 ENSMUSG00000020388.12 ENSMUSG00000020388 ENSMUST00000151948 Pdlim4 protein_coding Interval_148899 chr7 89924417 89925749 + 0 NA intron (ENSMUSG00000062797.14, intron 1 of 3) protein_coding-intron (ENSMUSG00000062797.14, intron 3 of 5) 16116 ENSMUSG00000062797.14 ENSMUSG00000062797 ENSMUST00000207695 Hikeshi protein_coding Interval_87004 chr19 45474870 45476466 + 0 NA intron (ENSMUSG00000025217.15, intron 5 of 13) protein_coding-intron (ENSMUSG00000025217.15, intron 4 of 14) -24473 ENSMUSG00000057605.4 ENSMUSG00000057605 ENSMUST00000077435 Gm6807 processed_pseudogene Interval_158452 chr8 83801949 83803737 + 0 NA Intergenic Intergenic 49925 ENSMUSG00000084682.1 ENSMUSG00000084682 ENSMUST00000122733 Gm22024 misc_RNA Interval_117530 chr4 124434236 124435318 + 0 NA intron (ENSMUSG00000084757.7, intron 2 of 3) lincRNA-intron (ENSMUSG00000084757.7, intron 2 of 3) 16508 ENSMUSG00000084757.7 ENSMUSG00000084757 ENSMUST00000156566 1700057H15Rik lincRNA Interval_62178 chr15 88603370 88604319 + 0 NA Intergenic Intergenic 3542 ENSMUSG00000054117.8 ENSMUSG00000054117 ENSMUST00000066949 Zdhhc25 protein_coding Interval_58783 chr15 38051038 38052047 + 0 NA intron (ENSMUSG00000037487.7, intron 1 of 58) protein_coding-intron (ENSMUSG00000037487.7, intron 1 of 58) -6743 ENSMUSG00000065852.1 ENSMUSG00000065852 ENSMUST00000083918 Gm22353 snoRNA Interval_171125 chr9 114655536 114656367 + 0 NA Intergenic Intergenic -7916 ENSMUSG00000111744.1 ENSMUSG00000111744 ENSMUST00000214787 Gm7780 processed_pseudogene Interval_64519 chr16 13024092 13025728 + 0 NA Intergenic Intergenic -73447 ENSMUSG00000116170.1 ENSMUSG00000116170 ENSMUST00000230534 Gm6332 processed_pseudogene Interval_57253 chr15 8157069 8157678 + 0 NA TTS (ENSMUSG00000022142.8) protein_coding-TTS (ENSMUSG00000022142.8) 6290 ENSMUSG00000022142.8 ENSMUSG00000022142 ENSMUST00000230647 Nup155 protein_coding Interval_97917 chr2 145699584 145700250 + 0 NA intron (ENSMUSG00000001768.16, intron 2 of 4) protein_coding-intron (ENSMUSG00000001768.16, intron 1 of 1) 1808 ENSMUSG00000081722.1 ENSMUSG00000081722 ENSMUST00000119964 Gm11763 processed_pseudogene Interval_21015 chr10 123263862 123266482 + 0 NA exon (ENSMUSG00000044071.9, exon 1 of 6) protein_coding-exon (ENSMUSG00000044071.9, exon 1 of 6) 1096 ENSMUSG00000044071.9 ENSMUSG00000044071 ENSMUST00000219723 Tafa2 protein_coding Interval_25450 chr11 48668064 48668488 + 0 NA Intergenic Intergenic -16433 ENSMUSG00000088425.1 ENSMUSG00000088425 ENSMUST00000157800 Gm24422 snoRNA Interval_28197 chr11 74186057 74186528 + 0 NA promoter-TSS (ENSMUSG00000070378.3) protein_coding-promoter-TSS (ENSMUSG00000070378.3) 19 ENSMUSG00000070378.3 ENSMUSG00000070378 ENSMUST00000076675 Olfr403 protein_coding Interval_23898 chr11 28035498 28036836 + 0 NA Intergenic Intergenic -9868 ENSMUSG00000083201.1 ENSMUSG00000083201 ENSMUST00000119821 Gm12080 processed_pseudogene Interval_92853 chr2 66655705 66656059 + 0 NA Intergenic Intergenic -21229 ENSMUSG00000075316.11 ENSMUSG00000075316 ENSMUST00000141603 Scn9a protein_coding Interval_144478 chr7 25365957 25366599 + 0 NA TTS (ENSMUSG00000045039.9) protein_coding-TTS (ENSMUSG00000045039.9) 3425 ENSMUSG00000063651.11 ENSMUSG00000063651 ENSMUST00000076276 Cnfn protein_coding Interval_138425 chr6 88083992 88085226 + 0 NA promoter-TSS (ENSMUSG00000030062.7) protein_coding-promoter-TSS (ENSMUSG00000030062.7) 46 ENSMUSG00000030062.7 ENSMUSG00000030062 ENSMUST00000204164 Rpn1 protein_coding Interval_86746 chr19 43570751 43571652 + 0 NA intron (ENSMUSG00000117991.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000117991.1, intron 1 of 2) 2156 ENSMUSG00000117991.1 ENSMUSG00000117991 ENSMUST00000235198 Gm34636 lincRNA Interval_112196 chr4 35551039 35552527 + 0 NA Intergenic Intergenic 115569 ENSMUSG00000083851.1 ENSMUSG00000083851 ENSMUST00000117931 Gm12365 processed_pseudogene Interval_51664 chr14 31217467 31217921 + 0 NA promoter-TSS (ENSMUSG00000021904.6) protein_coding-promoter-TSS (ENSMUSG00000021904.6) -166 ENSMUSG00000021904.6 ENSMUSG00000021904 ENSMUST00000090180 Sema3g protein_coding Interval_33505 chr11 116909070 116909435 + 0 NA Intergenic Intergenic -38083 ENSMUSG00000043857.16 ENSMUSG00000043857 ENSMUST00000126757 Mgat5b protein_coding Interval_80776 chr18 46984135 46985303 + 0 NA TTS (ENSMUSG00000087857.1) snoRNA-TTS (ENSMUSG00000087857.1) 762 ENSMUSG00000087857.1 ENSMUSG00000087857 ENSMUST00000157232 Gm22791 snoRNA Interval_120209 chr4 144299184 144300195 + 0 NA Intergenic Intergenic 2997 ENSMUSG00000095960.1 ENSMUSG00000095960 ENSMUST00000117343 Gm13120 processed_pseudogene Interval_81023 chr18 53040996 53041332 + 0 NA Intergenic Intergenic 88615 ENSMUSG00000118195.1 ENSMUSG00000118195 ENSMUST00000235787 Gm8572 processed_pseudogene Interval_86635 chr19 42190336 42191115 + 0 NA TTS (ENSMUSG00000018820.13) protein_coding-TTS (ENSMUSG00000018820.13) 5116 ENSMUSG00000018820.13 ENSMUSG00000018820 ENSMUST00000170184 Zfyve27 protein_coding Interval_169923 chr9 102994426 102994712 + 0 NA intron (ENSMUSG00000032548.14, intron 1 of 3) protein_coding-intron (ENSMUSG00000032548.14, intron 1 of 3) 2674 ENSMUSG00000084539.1 ENSMUSG00000084539 ENSMUST00000122590 Gm25842 misc_RNA Interval_166255 chr9 57817220 57818548 + 0 NA intron (ENSMUSG00000004661.15, intron 2 of 8) protein_coding-intron (ENSMUSG00000004661.15, intron 1 of 7) -21663 ENSMUSG00000004661.15 ENSMUSG00000004661 ENSMUST00000167670 Arid3b protein_coding Interval_132222 chr5 143413629 143414187 + 0 NA intron (ENSMUSG00000079111.3, intron 2 of 4) protein_coding-intron (ENSMUSG00000079111.3, intron 2 of 4) 10070 ENSMUSG00000079111.3 ENSMUSG00000079111 ENSMUST00000110731 Kdelr2 protein_coding Interval_103976 chr3 55787125 55788050 + 0 NA promoter-TSS (ENSMUSG00000027799.12) protein_coding-promoter-TSS (ENSMUSG00000027799.12) 5077 ENSMUSG00000056947.5 ENSMUSG00000056947 ENSMUST00000075422 Mab21l1 protein_coding Interval_153910 chr8 10961827 10962639 + 0 NA TTS (ENSMUSG00000109508.1) lincRNA-TTS (ENSMUSG00000109508.1) 8581 ENSMUSG00000109508.1 ENSMUSG00000109508 ENSMUST00000208277 Gm44956 lincRNA Interval_65971 chr16 30614182 30615864 + 0 NA Intergenic Intergenic 15300 ENSMUSG00000046546.3 ENSMUSG00000046546 ENSMUST00000059078 Fam43a protein_coding Interval_25728 chr11 51161152 51161763 + 0 NA Intergenic Intergenic 14365 ENSMUSG00000081296.1 ENSMUSG00000081296 ENSMUST00000118235 Gm12203 processed_pseudogene Interval_161767 chr8 122635806 122636884 + 0 NA intron (ENSMUSG00000006362.16, intron 7 of 11) protein_coding-intron (ENSMUSG00000006362.16, intron 6 of 10) -13611 ENSMUSG00000069867.3 ENSMUSG00000069867 ENSMUST00000212966 Pabpn1l protein_coding Interval_151974 chr7 127903755 127904817 + 0 NA promoter-TSS (ENSMUSG00000030802.14) protein_coding-promoter-TSS (ENSMUSG00000030802.14) -476 ENSMUSG00000030802.14 ENSMUSG00000030802 ENSMUST00000206068 Bckdk protein_coding Interval_36607 chr12 51377018 51377869 + 0 NA promoter-TSS (ENSMUSG00000020952.10) protein_coding-promoter-TSS (ENSMUSG00000020952.10) -138 ENSMUSG00000020952.10 ENSMUSG00000020952 ENSMUST00000218138 Scfd1 protein_coding Interval_111050 chr4 11510259 11510544 + 0 NA intron (ENSMUSG00000040720.15, intron 7 of 24) protein_coding-intron (ENSMUSG00000040720.15, intron 7 of 12) -7562 ENSMUSG00000086625.1 ENSMUSG00000086625 ENSMUST00000141538 Gm11831 antisense Interval_84219 chr19 8844825 8845081 + 0 NA intron (ENSMUSG00000071657.12, intron 4 of 11) protein_coding-intron (ENSMUSG00000071657.12, intron 3 of 10) -5759 ENSMUSG00000071658.5 ENSMUSG00000071658 ENSMUST00000096259 Gng3 protein_coding Interval_116964 chr4 118500202 118501413 + 0 NA Intergenic Intergenic -3165 ENSMUSG00000080857.1 ENSMUSG00000080857 ENSMUST00000117834 Gm12859 processed_pseudogene Interval_152647 chr7 135685618 135685867 + 0 NA exon (ENSMUSG00000041836.10, exon 21 of 21) protein_coding-exon (ENSMUSG00000041836.10, exon 21 of 21) -23452 ENSMUSG00000109910.1 ENSMUSG00000109910 ENSMUST00000211437 Gm45240 TEC Interval_5832 chr1 92329463 92330399 + 0 NA TTS (ENSMUSG00000101265.1) lincRNA-TTS (ENSMUSG00000101265.1) 5421 ENSMUSG00000101265.1 ENSMUSG00000101265 ENSMUST00000187370 Gm29099 lincRNA Interval_69318 chr16 92170358 92171346 + 0 NA intron (ENSMUSG00000116747.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000116747.1, intron 1 of 2) 16605 ENSMUSG00000116608.1 ENSMUSG00000116608 ENSMUST00000232211 Gm41495 lincRNA Interval_160234 chr8 107329489 107329904 + 0 NA TTS (ENSMUSG00000003847.16) protein_coding-TTS (ENSMUSG00000003847.16) 36226 ENSMUSG00000003847.16 ENSMUSG00000003847 ENSMUST00000147588 Nfat5 protein_coding Interval_62551 chr15 94579199 94580451 + 0 NA exon (ENSMUSG00000022451.12, exon 9 of 9) protein_coding-exon (ENSMUSG00000022451.12, exon 9 of 9) 5650 ENSMUSG00000022451.12 ENSMUSG00000022451 ENSMUST00000152590 Twf1 protein_coding Interval_52700 chr14 48709439 48710327 + 0 NA intron (ENSMUSG00000098682.8, intron 3 of 3) lincRNA-intron (ENSMUSG00000098682.8, intron 3 of 4) 5699 ENSMUSG00000115429.1 ENSMUSG00000115429 ENSMUST00000227165 Gm49153 TEC Interval_129512 chr5 120662112 120663185 + 0 NA intron (ENSMUSG00000029602.11, intron 7 of 20) protein_coding-intron (ENSMUSG00000029602.11, intron 8 of 21) 13460 ENSMUSG00000029602.11 ENSMUSG00000029602 ENSMUST00000154759 Rasal1 protein_coding Interval_105149 chr3 82725178 82725839 + 0 NA Intergenic Intergenic -29016 ENSMUSG00000104898.1 ENSMUSG00000104898 ENSMUST00000196689 Gm30043 lincRNA Interval_86855 chr19 44377837 44378970 + 0 NA Intergenic Intergenic 28287 ENSMUSG00000037071.3 ENSMUSG00000037071 ENSMUST00000235741 Scd1 protein_coding Interval_169765 chr9 101060458 101063367 + 0 NA Intergenic Intergenic 8370 ENSMUSG00000100563.1 ENSMUSG00000100563 ENSMUST00000185770 Gm3096 processed_pseudogene Interval_110418 chr3 157924692 157925601 + 0 NA promoter-TSS (ENSMUSG00000028177.13) antisense-promoter-TSS (ENSMUSG00000028177.13) -74 ENSMUSG00000028177.13 ENSMUSG00000028177 ENSMUST00000196971 1810013D15Rik antisense Interval_55543 chr14 91458010 91459604 + 0 NA Intergenic Intergenic 189032 ENSMUSG00000115368.1 ENSMUSG00000115368 ENSMUST00000227213 Gm48942 lincRNA Interval_125693 chr5 73315542 73316834 + 0 NA Intergenic Intergenic 4824 ENSMUSG00000107331.1 ENSMUSG00000107331 ENSMUST00000202887 Gm42732 TEC Interval_162392 chr8 127863241 127863693 + 0 NA Intergenic Intergenic 265761 ENSMUSG00000088580.1 ENSMUSG00000088580 ENSMUST00000157955 Gm22968 rRNA Interval_22782 chr11 15435227 15436458 + 0 NA Intergenic Intergenic -16580 ENSMUSG00000089359.1 ENSMUSG00000089359 ENSMUST00000158734 Gm25490 snoRNA Interval_112773 chr4 44880165 44880793 + 0 NA intron (ENSMUSG00000035649.17, intron 3 of 6) protein_coding-intron (ENSMUSG00000035649.17, intron 2 of 5) 15172 ENSMUSG00000094842.1 ENSMUSG00000094842 ENSMUST00000175591 Gm22639 miRNA Interval_5989 chr1 93742915 93743309 + 0 NA intron (ENSMUSG00000101952.1, intron 1 of 2) protein_coding-intron (ENSMUSG00000026279.14, intron 2 of 5) 11668 ENSMUSG00000026279.14 ENSMUSG00000026279 ENSMUST00000189173 Thap4 protein_coding Interval_106406 chr3 95970250 95970751 + 0 NA Intergenic Intergenic -6112 ENSMUSG00000106640.1 ENSMUSG00000106640 ENSMUST00000197308 Gm20940 processed_pseudogene Interval_29525 chr11 84684535 84685002 + 0 NA Intergenic Intergenic 35664 ENSMUSG00000085044.1 ENSMUSG00000085044 ENSMUST00000150735 1700109G15Rik lincRNA Interval_19759 chr10 108537553 108538065 + 0 NA intron (ENSMUSG00000035864.14, intron 10 of 11) protein_coding-intron (ENSMUSG00000035864.14, intron 9 of 10) 55159 ENSMUSG00000112065.1 ENSMUSG00000112065 ENSMUST00000217917 Gm47466 processed_pseudogene Interval_90819 chr2 32787228 32787564 + 0 NA TTS (ENSMUSG00000026797.16) protein_coding-TTS (ENSMUSG00000026797.16) -8250 ENSMUSG00000038987.8 ENSMUSG00000038987 ENSMUST00000150918 Cfap157 protein_coding Interval_77955 chr18 6089650 6090030 + 0 NA intron (ENSMUSG00000041225.16, intron 1 of 4) protein_coding-intron (ENSMUSG00000041225.16, intron 3 of 18) 22140 ENSMUSG00000041225.16 ENSMUSG00000041225 ENSMUST00000182572 Arhgap12 protein_coding Interval_157356 chr8 69832165 69833108 + 0 NA promoter-TSS (ENSMUSG00000031860.17) protein_coding-promoter-TSS (ENSMUSG00000031860.17) -1 ENSMUSG00000031860.17 ENSMUSG00000031860 ENSMUST00000135952 Pbx4 protein_coding Interval_167130 chr9 65550867 65551771 + 0 NA Intergenic Intergenic -21513 ENSMUSG00000111818.1 ENSMUSG00000111818 ENSMUST00000216282 Gm17749 processed_transcript Interval_109838 chr3 148829059 148829331 + 0 NA promoter-TSS (ENSMUSG00000028184.12) protein_coding-promoter-TSS (ENSMUSG00000028184.12) -159957 ENSMUSG00000104786.1 ENSMUSG00000104786 ENSMUST00000196445 Gm43573 antisense Interval_49838 chr13 116962275 116962657 + 0 NA intron (ENSMUSG00000021725.9, intron 2 of 24) protein_coding-intron (ENSMUSG00000021725.9, intron 3 of 26) 62807 ENSMUSG00000021725.9 ENSMUSG00000021725 ENSMUST00000223833 Parp8 protein_coding Interval_144573 chr7 26213331 26213721 + 0 NA Intergenic Intergenic -32373 ENSMUSG00000092464.1 ENSMUSG00000092464 ENSMUST00000174341 Gm8902 processed_pseudogene Interval_61832 chr15 84487239 84487798 + 0 NA Intergenic Intergenic -40421 ENSMUSG00000062760.11 ENSMUSG00000062760 ENSMUST00000186527 Shisal1 protein_coding Interval_157981 chr8 77536042 77536685 + 0 NA Intergenic Intergenic -13091 ENSMUSG00000037134.17 ENSMUSG00000037134 ENSMUST00000156753 Prmt9 protein_coding Interval_145441 chr7 34767486 34767970 + 0 NA intron (ENSMUSG00000060402.8, intron 1 of 2) protein_coding-intron (ENSMUSG00000060402.8, intron 1 of 3) -13916 ENSMUSG00000060402.8 ENSMUSG00000060402 ENSMUST00000205390 Chst8 protein_coding Interval_39950 chr12 100064346 100065395 + 0 NA Intergenic Intergenic 15947 ENSMUSG00000112999.1 ENSMUSG00000112999 ENSMUST00000221663 9530050K03Rik processed_pseudogene Interval_114438 chr4 76787295 76788122 + 0 NA intron (ENSMUSG00000028399.18, intron 8 of 9) protein_coding-intron (ENSMUSG00000028399.18, intron 8 of 14) -6021 ENSMUSG00000081890.1 ENSMUSG00000081890 ENSMUST00000122335 Gm11243 processed_pseudogene Interval_146173 chr7 44519281 44519795 + 0 NA intron (ENSMUSG00000038670.11, intron 7 of 27) protein_coding-intron (ENSMUSG00000038670.11, intron 7 of 27) -10460 ENSMUSG00000038670.11 ENSMUSG00000038670 ENSMUST00000207516 Mybpc2 protein_coding Interval_25097 chr11 43870853 43871061 + 0 NA intron (ENSMUSG00000050541.14, intron 1 of 4) protein_coding-intron (ENSMUSG00000050541.14, intron 1 of 4) -34625 ENSMUSG00000050541.14 ENSMUSG00000050541 ENSMUST00000139906 Adra1b protein_coding Interval_14144 chr10 28083983 28084229 + 0 NA intron (ENSMUSG00000019889.10, intron 1 of 2) protein_coding-intron (ENSMUSG00000019889.10, intron 1 of 31) -17916 ENSMUSG00000112432.1 ENSMUSG00000112432 ENSMUST00000218855 Gm18507 processed_pseudogene Interval_32840 chr11 111537741 111537927 + 0 NA Intergenic Intergenic 75472 ENSMUSG00000082448.1 ENSMUSG00000082448 ENSMUST00000120443 Gm11676 processed_pseudogene Interval_62717 chr15 96434345 96434764 + 0 NA intron (ENSMUSG00000033228.8, intron 1 of 7) protein_coding-intron (ENSMUSG00000033228.8, intron 4 of 14) 9501 ENSMUSG00000033228.8 ENSMUSG00000033228 ENSMUST00000227133 Scaf11 protein_coding Interval_101180 chr2 178963644 178964165 + 0 NA Intergenic Intergenic 57229 ENSMUSG00000082215.3 ENSMUSG00000082215 ENSMUST00000118225 Gm14314 processed_pseudogene Interval_45981 chr13 59754187 59754794 + 0 NA TTS (ENSMUSG00000044792.7) protein_coding-TTS (ENSMUSG00000044792.7) -9573 ENSMUSG00000051054.4 ENSMUSG00000051054 ENSMUST00000178508 1700014D04Rik protein_coding Interval_64759 chr16 15462724 15463320 + 0 NA Intergenic Intergenic 11018 ENSMUSG00000116423.1 ENSMUSG00000116423 ENSMUST00000230636 Gm7085 processed_pseudogene Interval_95121 chr2 104034608 104035307 + 0 NA intron (ENSMUSG00000027180.12, intron 3 of 9) protein_coding-intron (ENSMUSG00000027180.12, intron 3 of 10) -5712 ENSMUSG00000087739.1 ENSMUSG00000087739 ENSMUST00000157114 Gm24644 scaRNA Interval_66472 chr16 34076369 34076634 + 0 NA intron (ENSMUSG00000061751.16, intron 33 of 48) protein_coding-intron (ENSMUSG00000061751.16, intron 34 of 59) 19527 ENSMUSG00000061751.16 ENSMUSG00000061751 ENSMUST00000132569 Kalrn protein_coding Interval_109505 chr3 143100504 143101143 + 0 NA Intergenic Intergenic -7125 ENSMUSG00000106052.1 ENSMUSG00000106052 ENSMUST00000197030 Gm43614 lincRNA Interval_38116 chr12 75734907 75736061 + 0 NA exon (ENSMUSG00000021054.6, exon 1 of 3) protein_coding-exon (ENSMUSG00000021054.6, exon 1 of 3) 212 ENSMUSG00000021054.6 ENSMUSG00000021054 ENSMUST00000220285 Sgpp1 protein_coding Interval_17767 chr10 79969483 79969910 + 0 NA exon (ENSMUSG00000035754.8, exon 10 of 10) protein_coding-exon (ENSMUSG00000035754.8, exon 10 of 10) -4041 ENSMUSG00000035745.9 ENSMUSG00000035745 ENSMUST00000131816 Grin3b protein_coding Interval_64797 chr16 15868057 15869419 + 0 NA Intergenic Intergenic -3091 ENSMUSG00000116102.1 ENSMUSG00000116102 ENSMUST00000230053 Gm20082 processed_pseudogene Interval_141996 chr6 136446625 136447057 + 0 NA Intergenic Intergenic 29029 ENSMUSG00000088409.1 ENSMUSG00000088409 ENSMUST00000157784 Gm25882 snRNA Interval_76705 chr17 83606222 83607043 + 0 NA intron (ENSMUSG00000045053.2, intron 1 of 1) protein_coding-intron (ENSMUSG00000045053.2, intron 1 of 1) 25263 ENSMUSG00000045053.2 ENSMUSG00000045053 ENSMUST00000051482 Kcng3 protein_coding Interval_11059 chr1 179058989 179060866 + 0 NA intron (ENSMUSG00000055067.15, intron 4 of 7) protein_coding-intron (ENSMUSG00000055067.15, intron 5 of 8) -142313 ENSMUSG00000089713.1 ENSMUSG00000089713 ENSMUST00000162545 Gm16564 antisense Interval_21159 chr10 126978114 126981005 + 0 NA intron (ENSMUSG00000078429.9, intron 1 of 7) protein_coding-intron (ENSMUSG00000078429.9, intron 1 of 7) 530 ENSMUSG00000078429.9 ENSMUSG00000078429 ENSMUST00000105255 Ctdsp2 protein_coding Interval_59836 chr15 59628955 59629961 + 0 NA Intergenic Intergenic 10868 ENSMUSG00000115896.1 ENSMUSG00000115896 ENSMUST00000229684 Gm36677 lincRNA Interval_111510 chr4 22292719 22292997 + 0 NA Intergenic Intergenic 17025 ENSMUSG00000083376.1 ENSMUSG00000083376 ENSMUST00000121463 Gm11882 processed_pseudogene Interval_155410 chr8 33374022 33374372 + 0 NA intron (ENSMUSG00000031583.13, intron 1 of 8) protein_coding-intron (ENSMUSG00000031583.13, intron 1 of 33) -12128 ENSMUSG00000049184.6 ENSMUSG00000049184 ENSMUST00000078058 Purg protein_coding Interval_80711 chr18 46517079 46517455 + 0 NA intron (ENSMUSG00000033319.5, intron 2 of 2) protein_coding-intron (ENSMUSG00000033319.5, intron 2 of 2) 8704 ENSMUSG00000033319.5 ENSMUSG00000033319 ENSMUST00000036226 Fem1c protein_coding Interval_158385 chr8 83272713 83273782 + 0 NA TTS (ENSMUSG00000031709.15) protein_coding-TTS (ENSMUSG00000031709.15) 6161 ENSMUSG00000110422.1 ENSMUSG00000110422 ENSMUST00000211568 Gm17999 processed_pseudogene Interval_118836 chr4 133951188 133951428 + 0 NA Intergenic Intergenic 16583 ENSMUSG00000003038.15 ENSMUSG00000003038 ENSMUST00000136859 Hmgn2 protein_coding Interval_165573 chr9 49662979 49663261 + 0 NA intron (ENSMUSG00000039542.16, intron 1 of 1) protein_coding-intron (ENSMUSG00000039542.16, intron 1 of 15) 135802 ENSMUSG00000039542.16 ENSMUSG00000039542 ENSMUST00000217121 Ncam1 protein_coding Interval_23396 chr11 22207917 22208379 + 0 NA intron (ENSMUSG00000042302.14, intron 5 of 24) protein_coding-intron (ENSMUSG00000042302.14, intron 4 of 23) 78647 ENSMUSG00000042302.14 ENSMUSG00000042302 ENSMUST00000137594 Ehbp1 protein_coding Interval_92547 chr2 60469361 60469616 + 0 NA intron (ENSMUSG00000054580.14, intron 11 of 12) protein_coding-intron (ENSMUSG00000054580.14, intron 11 of 29) 57963 ENSMUSG00000087283.1 ENSMUSG00000087283 ENSMUST00000131457 Gm13580 antisense Interval_142277 chr6 140387591 140387796 + 0 NA Intergenic Intergenic -32478 ENSMUSG00000107891.1 ENSMUSG00000107891 ENSMUST00000204085 Gm5051 processed_pseudogene Interval_52580 chr14 47656371 47656659 + 0 NA intron (ENSMUSG00000021843.17, intron 2 of 39) protein_coding-intron (ENSMUSG00000021843.17, intron 1 of 1) -7272 ENSMUSG00000021843.17 ENSMUSG00000021843 ENSMUST00000190857 Ktn1 protein_coding Interval_64197 chr16 9029988 9030641 + 0 NA Intergenic Intergenic -19658 ENSMUSG00000116426.1 ENSMUSG00000116426 ENSMUST00000229201 Gm30567 lincRNA Interval_99389 chr2 160526207 160527413 + 0 NA Intergenic Intergenic -56547 ENSMUSG00000078955.3 ENSMUSG00000078955 ENSMUST00000128681 Gm14222 sense_intronic Interval_85576 chr19 28758860 28759511 + 0 NA Intergenic Intergenic 4245 ENSMUSG00000090737.1 ENSMUSG00000090737 ENSMUST00000166459 Gm6788 processed_pseudogene Interval_85218 chr19 23898522 23899725 + 0 NA intron (ENSMUSG00000024897.9, intron 2 of 12) protein_coding-intron (ENSMUSG00000024897.9, intron 2 of 12) -5334 ENSMUSG00000024897.9 ENSMUSG00000024897 ENSMUST00000237688 Apba1 protein_coding Interval_71453 chr17 23843273 23844548 + 0 NA promoter-TSS (ENSMUSG00000048992.9) protein_coding-promoter-TSS (ENSMUSG00000048992.9) 262 ENSMUSG00000024114.15 ENSMUSG00000024114 ENSMUST00000141788 Prss41 protein_coding Interval_34874 chr12 12885880 12886129 + 0 NA Intergenic Intergenic -18546 ENSMUSG00000097627.2 ENSMUSG00000097627 ENSMUST00000221053 4930519A11Rik lincRNA Interval_121671 chr5 4948241 4948497 + 0 NA intron (ENSMUSG00000028926.15, intron 3 of 3) protein_coding-intron (ENSMUSG00000028926.15, intron 11 of 14) 36868 ENSMUSG00000106272.1 ENSMUSG00000106272 ENSMUST00000197782 Gm22897 scaRNA Interval_95625 chr2 113012140 113012647 + 0 NA intron (ENSMUSG00000057378.15, intron 1 of 1) protein_coding-intron (ENSMUSG00000057378.15, intron 2 of 102) -273339 ENSMUSG00000041255.2 ENSMUSG00000041255 ENSMUST00000040856 Tmco5b protein_coding Interval_67461 chr16 49006065 49006360 + 0 NA intron (ENSMUSG00000033031.13, intron 11 of 21) protein_coding-intron (ENSMUSG00000033031.13, intron 10 of 20) -9625 ENSMUSG00000033031.13 ENSMUSG00000033031 ENSMUST00000149004 Cip2a protein_coding Interval_51161 chr14 24261910 24262299 + 0 NA Intergenic Intergenic -18713 ENSMUSG00000091079.1 ENSMUSG00000091079 ENSMUST00000163715 Gm17105 sense_intronic Interval_50279 chr14 11608872 11609143 + 0 NA intron (ENSMUSG00000021745.14, intron 1 of 3) protein_coding-intron (ENSMUSG00000021745.14, intron 1 of 29) -88237 ENSMUSG00000114849.1 ENSMUSG00000114849 ENSMUST00000224543 Gm48595 lincRNA Interval_38080 chr12 75541441 75541674 + 0 NA intron (ENSMUSG00000021051.10, intron 2 of 12) protein_coding-intron (ENSMUSG00000021051.10, intron 2 of 13) -32812 ENSMUSG00000112254.1 ENSMUSG00000112254 ENSMUST00000218033 Gm47690 TEC Interval_138407 chr6 87936411 87937800 + 0 NA TTS (ENSMUSG00000030060.14) protein_coding-TTS (ENSMUSG00000030060.14) 11772 ENSMUSG00000068689.8 ENSMUSG00000068689 ENSMUST00000161787 Rps19-ps9 processed_pseudogene Interval_144762 chr7 28086019 28086958 + 0 NA exon (ENSMUSG00000047730.17, exon 5 of 20) protein_coding-exon (ENSMUSG00000047730.17, exon 5 of 20) -27339 ENSMUSG00000047730.17 ENSMUSG00000047730 ENSMUST00000131090 Fcgbp protein_coding Interval_101780 chr3 9537955 9538912 + 0 NA intron (ENSMUSG00000040209.12, intron 1 of 9) protein_coding-intron (ENSMUSG00000040209.12, intron 2 of 8) 26866 ENSMUSG00000040209.12 ENSMUSG00000040209 ENSMUST00000192832 Zfp704 protein_coding Interval_62502 chr15 93541240 93541456 + 0 NA intron (ENSMUSG00000036158.12, intron 1 of 7) protein_coding-intron (ENSMUSG00000036158.12, intron 1 of 7) -21825 ENSMUSG00000036158.12 ENSMUSG00000036158 ENSMUST00000048982 Prickle1 protein_coding Interval_38536 chr12 79946888 79947261 + 0 NA Intergenic Intergenic -7435 ENSMUSG00000112646.1 ENSMUSG00000112646 ENSMUST00000217787 Gm5654 processed_pseudogene Interval_72145 chr17 28266815 28267877 + 0 NA intron (ENSMUSG00000002250.16, intron 2 of 6) protein_coding-intron (ENSMUSG00000002250.16, intron 2 of 7) 34572 ENSMUSG00000002250.16 ENSMUSG00000002250 ENSMUST00000233383 Ppard protein_coding Interval_89485 chr2 20955720 20956023 + 0 NA intron (ENSMUSG00000036591.16, intron 2 of 25) protein_coding-intron (ENSMUSG00000036591.16, intron 2 of 25) -13183 ENSMUSG00000075514.4 ENSMUSG00000075514 ENSMUST00000126967 Gm13375 antisense Interval_40177 chr12 102338699 102338911 + 0 NA intron (ENSMUSG00000044456.16, intron 3 of 9) protein_coding-intron (ENSMUSG00000044456.16, intron 3 of 9) 55637 ENSMUSG00000044456.16 ENSMUSG00000044456 ENSMUST00000139686 Rin3 protein_coding Interval_104980 chr3 79480383 79481561 + 0 NA TTS (ENSMUSG00000061175.12) protein_coding-TTS (ENSMUSG00000061175.12) 50904 ENSMUSG00000061175.12 ENSMUSG00000061175 ENSMUST00000139171 Fnip2 protein_coding Interval_113342 chr4 53600224 53600894 + 0 NA intron (ENSMUSG00000028412.17, intron 1 of 1) protein_coding-intron (ENSMUSG00000028412.17, intron 15 of 15) -35862 ENSMUSG00000084970.1 ENSMUSG00000084970 ENSMUST00000138377 1700060J05Rik antisense Interval_72801 chr17 32247990 32248309 + 0 NA intron (ENSMUSG00000024002.18, intron 1 of 8) protein_coding-intron (ENSMUSG00000024002.18, intron 2 of 19) 5986 ENSMUSG00000116414.2 ENSMUSG00000116414 ENSMUST00000230961 Gm4432 processed_pseudogene Interval_106516 chr3 96823569 96823780 + 0 NA intron (ENSMUSG00000038304.14, intron 1 of 3) protein_coding-intron (ENSMUSG00000038304.14, intron 1 of 4) 5677 ENSMUSG00000038304.14 ENSMUSG00000038304 ENSMUST00000047702 Cd160 protein_coding Interval_141904 chr6 135249885 135250325 + 0 NA intron (ENSMUSG00000030206.13, intron 1 of 5) protein_coding-intron (ENSMUSG00000030206.13, intron 1 of 5) 4221 ENSMUSG00000030206.13 ENSMUSG00000030206 ENSMUST00000111910 Gsg1 protein_coding Interval_169355 chr9 96675211 96676849 + 0 NA Intergenic Intergenic -29798 ENSMUSG00000102097.1 ENSMUSG00000102097 ENSMUST00000186821 A930006L05Rik antisense Interval_64044 chr16 6284001 6284959 + 0 NA intron (ENSMUSG00000008658.16, intron 2 of 11) protein_coding-intron (ENSMUSG00000008658.16, intron 2 of 11) 308895 ENSMUSG00000101481.1 ENSMUSG00000101481 ENSMUST00000190515 1700123O21Rik sense_intronic Interval_41003 chr12 110540894 110542191 + 0 NA intron (ENSMUSG00000017843.14, intron 4 of 12) protein_coding-intron (ENSMUSG00000017843.14, intron 2 of 13) -48970 ENSMUSG00000113361.1 ENSMUSG00000113361 ENSMUST00000221143 B930059L03Rik lincRNA Interval_82034 chr18 67294797 67295030 + 0 NA intron (ENSMUSG00000024525.7, intron 1 of 7) protein_coding-intron (ENSMUSG00000024525.7, intron 1 of 7) -13676 ENSMUSG00000024525.7 ENSMUSG00000024525 ENSMUST00000237149 Impa2 protein_coding Interval_16444 chr10 62902237 62903462 + 0 NA intron (ENSMUSG00000047146.17, intron 1 of 2) protein_coding-intron (ENSMUSG00000047146.17, intron 1 of 2) -9335 ENSMUSG00000084569.1 ENSMUSG00000084569 ENSMUST00000122620 Gm26479 snRNA Interval_125426 chr5 67016038 67016932 + 0 NA exon (ENSMUSG00000037736.20, exon 9 of 21) protein_coding-exon (ENSMUSG00000037736.20, exon 9 of 21) 22891 ENSMUSG00000106785.1 ENSMUSG00000106785 ENSMUST00000202709 Gm42713 TEC Interval_162048 chr8 124721314 124722615 + 0 NA promoter-TSS (ENSMUSG00000031982.5) protein_coding-promoter-TSS (ENSMUSG00000031982.5) 4 ENSMUSG00000037300.19 ENSMUSG00000037300 ENSMUST00000127167 Ttc13 protein_coding Interval_92010 chr2 52542260 52542458 + 0 NA intron (ENSMUSG00000017412.15, intron 2 of 13) protein_coding-intron (ENSMUSG00000017412.15, intron 2 of 13) -9610 ENSMUSG00000082132.1 ENSMUSG00000082132 ENSMUST00000119519 Gm13541 processed_pseudogene Interval_122488 chr5 23407950 23408651 + 0 NA intron (ENSMUSG00000073147.3, intron 2 of 4) lincRNA-intron (ENSMUSG00000073147.3, intron 1 of 6) 12197 ENSMUSG00000105042.1 ENSMUSG00000105042 ENSMUST00000197390 Gm42509 TEC Interval_86275 chr19 38325818 38327393 + 0 NA Intergenic Intergenic -11335 ENSMUSG00000105709.1 ENSMUSG00000105709 ENSMUST00000199966 Gm42723 antisense Interval_99658 chr2 164018666 164019667 + 0 NA TTS (ENSMUSG00000018326.9) protein_coding-TTS (ENSMUSG00000018326.9) -17834 ENSMUSG00000054582.4 ENSMUSG00000054582 ENSMUST00000150523 Pabpc1l protein_coding Interval_12117 chr1 189849586 189851523 + 0 NA exon (ENSMUSG00000026604.17, exon 13 of 19) protein_coding-exon (ENSMUSG00000026604.17, exon 13 of 19) 5511 ENSMUSG00000026604.17 ENSMUSG00000026604 ENSMUST00000148129 Ptpn14 protein_coding Interval_40618 chr12 106055713 106056181 + 0 NA intron (ENSMUSG00000021115.15, intron 6 of 13) protein_coding-intron (ENSMUSG00000021115.15, intron 6 of 14) -28423 ENSMUSG00000113427.1 ENSMUSG00000113427 ENSMUST00000222979 Gm46378 lincRNA Interval_153689 chr8 4627041 4627667 + 0 NA intron (ENSMUSG00000058748.9, intron 3 of 3) protein_coding-intron (ENSMUSG00000058748.9, intron 2 of 2) -14112 ENSMUSG00000109489.1 ENSMUSG00000109489 ENSMUST00000208382 Gm7451 processed_pseudogene Interval_136945 chr6 65011552 65012682 + 0 NA Intergenic Intergenic 21170 ENSMUSG00000086176.4 ENSMUSG00000086176 ENSMUST00000137642 Gm15534 processed_pseudogene Interval_64685 chr16 14166440 14166943 + 0 NA intron (ENSMUSG00000022678.16, intron 1 of 2) protein_coding-intron (ENSMUSG00000022678.16, intron 1 of 8) 7065 ENSMUSG00000070074.1 ENSMUSG00000070074 ENSMUST00000093566 Mir484 miRNA Interval_18779 chr10 90656173 90656691 + 0 NA intron (ENSMUSG00000058589.14, intron 16 of 25) protein_coding-intron (ENSMUSG00000058589.14, intron 2 of 11) -72528 ENSMUSG00000112153.1 ENSMUSG00000112153 ENSMUST00000218673 Gm47591 sense_intronic Interval_117235 chr4 120843970 120844552 + 0 NA Intergenic Intergenic 6773 ENSMUSG00000096876.1 ENSMUSG00000096876 ENSMUST00000179354 Gm23936 miRNA Interval_91667 chr2 46544433 46545119 + 0 NA Intergenic Intergenic 62307 ENSMUSG00000089144.1 ENSMUSG00000089144 ENSMUST00000158519 Gm25264 snoRNA Interval_76201 chr17 76980263 76980460 + 0 NA Intergenic Intergenic 43721 ENSMUSG00000117388.1 ENSMUSG00000117388 ENSMUST00000235006 Gm6496 processed_pseudogene Interval_28466 chr11 76141737 76142546 + 0 NA intron (ENSMUSG00000017288.15, intron 2 of 3) protein_coding-intron (ENSMUSG00000017288.15, intron 4 of 21) -2117 ENSMUSG00000080701.1 ENSMUSG00000080701 ENSMUST00000121617 Gm12340 unprocessed_pseudogene Interval_79322 chr18 30495174 30495657 + 0 NA promoter-TSS (ENSMUSG00000055771.2) processed_pseudogene-promoter-TSS (ENSMUSG00000055771.2) -42 ENSMUSG00000055771.2 ENSMUSG00000055771 ENSMUST00000069529 Gm7936 processed_pseudogene Interval_48710 chr13 101767084 101768934 + 0 NA exon (ENSMUSG00000041417.15, exon 1 of 16) protein_coding-exon (ENSMUSG00000041417.15, exon 1 of 16) -14804 ENSMUSG00000102635.1 ENSMUSG00000102635 ENSMUST00000193295 Gm36638 TEC Interval_128163 chr5 111408558 111410216 + 0 NA Intergenic Intergenic -7975 ENSMUSG00000070576.4 ENSMUSG00000070576 ENSMUST00000094463 Mn1 protein_coding Interval_25442 chr11 48592929 48593140 + 0 NA Intergenic Intergenic -2245 ENSMUSG00000082250.1 ENSMUSG00000082250 ENSMUST00000121448 Gm12181 processed_pseudogene Interval_131268 chr5 136079970 136080499 + 0 NA Intergenic Intergenic -10868 ENSMUSG00000004952.13 ENSMUSG00000004952 ENSMUST00000130598 Rasa4 protein_coding Interval_68976 chr16 89872174 89872828 + 0 NA intron (ENSMUSG00000002489.16, intron 6 of 27) protein_coding-intron (ENSMUSG00000002489.16, intron 6 of 27) -77219 ENSMUSG00000002489.16 ENSMUSG00000002489 ENSMUST00000136760 Tiam1 protein_coding Interval_102990 chr3 34057863 34058160 + 0 NA exon (ENSMUSG00000027679.13, exon 6 of 6) protein_coding-exon (ENSMUSG00000027679.13, exon 6 of 6) -2582 ENSMUSG00000105135.1 ENSMUSG00000105135 ENSMUST00000198616 Gm43667 TEC Interval_121932 chr5 10189534 10190594 + 0 NA intron (ENSMUSG00000073226.9, intron 1 of 2) lincRNA-intron (ENSMUSG00000073226.9, intron 1 of 2) 2198 ENSMUSG00000073226.9 ENSMUSG00000073226 ENSMUST00000101606 Gm10482 lincRNA Interval_87599 chr19 53661884 53662814 + 0 NA Intergenic Intergenic -14957 ENSMUSG00000043639.15 ENSMUSG00000043639 ENSMUST00000161856 Rbm20 protein_coding Interval_19781 chr10 108743248 108743679 + 0 NA intron (ENSMUSG00000035864.14, intron 3 of 7) protein_coding-intron (ENSMUSG00000035864.14, intron 3 of 10) -34848 ENSMUSG00000111910.1 ENSMUSG00000111910 ENSMUST00000219164 Gm47472 TEC Interval_15057 chr10 42260625 42261961 + 0 NA intron (ENSMUSG00000048756.11, intron 2 of 2) protein_coding-intron (ENSMUSG00000048756.11, intron 2 of 3) -2927 ENSMUSG00000048756.11 ENSMUSG00000048756 ENSMUST00000105501 Foxo3 protein_coding Interval_95530 chr2 111633201 111633448 + 0 NA Intergenic Intergenic -6827 ENSMUSG00000094858.3 ENSMUSG00000094858 ENSMUST00000099612 Olfr1297 protein_coding Interval_109813 chr3 147963333 147964726 + 0 NA Intergenic Intergenic -166215 ENSMUSG00000106285.1 ENSMUSG00000106285 ENSMUST00000196226 Gm43574 processed_transcript Interval_68699 chr16 84811198 84811422 + 0 NA TTS (ENSMUSG00000053062.16) protein_coding-TTS (ENSMUSG00000053062.16) -6787 ENSMUSG00000088249.1 ENSMUSG00000088249 ENSMUST00000157624 Gm25908 rRNA Interval_35597 chr12 25155518 25156011 + 0 NA intron (ENSMUSG00000113587.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000113587.1, intron 1 of 2) 4849 ENSMUSG00000113587.1 ENSMUSG00000113587 ENSMUST00000223481 Gm36287 lincRNA Interval_36259 chr12 40428096 40428599 + 0 NA intron (ENSMUSG00000055917.15, intron 1 of 12) protein_coding-intron (ENSMUSG00000055917.15, intron 1 of 11) -17736 ENSMUSG00000035954.10 ENSMUSG00000035954 ENSMUST00000220850 Dock4 protein_coding Interval_124371 chr5 44930306 44930561 + 0 NA Intergenic Intergenic -35767 ENSMUSG00000062496.9 ENSMUSG00000062496 ENSMUST00000079389 4930431F12Rik lincRNA Interval_19371 chr10 98446803 98447005 + 0 NA Intergenic Intergenic 39969 ENSMUSG00000102310.1 ENSMUSG00000102310 ENSMUST00000192275 Gm37631 TEC Interval_93935 chr2 79564777 79565155 + 0 NA Intergenic Intergenic -74216 ENSMUSG00000027007.16 ENSMUSG00000027007 ENSMUST00000133266 Itprid2 protein_coding Interval_40391 chr12 104592968 104593656 + 0 NA Intergenic Intergenic 73344 ENSMUSG00000112954.1 ENSMUSG00000112954 ENSMUST00000222329 Gm49732 lincRNA Interval_84841 chr19 17388269 17389481 + 0 NA Intergenic Intergenic -8562 ENSMUSG00000024712.9 ENSMUSG00000024712 ENSMUST00000146171 Rfk protein_coding Interval_171202 chr9 115163000 115163364 + 0 NA intron (ENSMUSG00000040875.12, intron 1 of 4) protein_coding-intron (ENSMUSG00000040875.12, intron 2 of 9) 22876 ENSMUSG00000098127.1 ENSMUSG00000098127 ENSMUST00000183244 Gm4665 antisense Interval_5280 chr1 87213546 87214929 + 0 NA promoter-TSS (ENSMUSG00000026254.17) protein_coding-promoter-TSS (ENSMUSG00000026254.17) 258 ENSMUSG00000026254.17 ENSMUSG00000026254 ENSMUST00000113231 Eif4e2 protein_coding Interval_124419 chr5 45837518 45839250 + 0 NA intron (ENSMUSG00000015882.18, intron 1 of 4) protein_coding-intron (ENSMUSG00000015882.18, intron 1 of 6) 19231 ENSMUSG00000015882.18 ENSMUSG00000015882 ENSMUST00000186633 Lcorl protein_coding Interval_111603 chr4 24423365 24424083 + 0 NA exon (ENSMUSG00000081148.1, exon 1 of 2) processed_pseudogene-exon (ENSMUSG00000081148.1, exon 1 of 2) 247 ENSMUSG00000081148.1 ENSMUSG00000081148 ENSMUST00000121241 Gm11891 processed_pseudogene Interval_133194 chr5 150457488 150458554 + 0 NA intron (ENSMUSG00000056602.12, intron 51 of 60) protein_coding-intron (ENSMUSG00000056602.12, intron 51 of 60) 11239 ENSMUSG00000107262.1 ENSMUSG00000107262 ENSMUST00000201000 Gm18753 processed_pseudogene Interval_43410 chr13 30258863 30260419 + 0 NA Intergenic Intergenic 27788 ENSMUSG00000038732.15 ENSMUSG00000038732 ENSMUST00000222095 Mboat1 protein_coding Interval_76502 chr17 80616896 80617263 + 0 NA intron (ENSMUSG00000024242.15, intron 3 of 18) protein_coding-intron (ENSMUSG00000024242.15, intron 18 of 33) 7907 ENSMUSG00000024242.15 ENSMUSG00000024242 ENSMUST00000234486 Map4k3 protein_coding Interval_152657 chr7 135791112 135791543 + 0 NA intron (ENSMUSG00000109831.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000109831.1, intron 1 of 2) 48651 ENSMUSG00000109831.1 ENSMUSG00000109831 ENSMUST00000209706 Gm36431 lincRNA Interval_75109 chr17 63524105 63526876 + 0 NA Intergenic Intergenic -45413 ENSMUSG00000117256.1 ENSMUSG00000117256 ENSMUST00000233628 Gm5497 processed_pseudogene Interval_111912 chr4 32492724 32492958 + 0 NA intron (ENSMUSG00000040270.16, intron 1 of 4) protein_coding-intron (ENSMUSG00000040270.16, intron 3 of 7) -21946 ENSMUSG00000084611.1 ENSMUSG00000084611 ENSMUST00000122662 Gm24371 misc_RNA Interval_60334 chr15 72979153 72979378 + 0 NA intron (ENSMUSG00000047921.17, intron 8 of 16) protein_coding-intron (ENSMUSG00000047921.17, intron 8 of 21) 65908 ENSMUSG00000096173.2 ENSMUSG00000096173 ENSMUST00000166418 Gm3150 processed_pseudogene Interval_164222 chr9 32754331 32754565 + 0 NA TTS (ENSMUSG00000032035.16) protein_coding-TTS (ENSMUSG00000032035.16) -43277 ENSMUSG00000098843.1 ENSMUSG00000098843 ENSMUST00000183616 Gm27240 antisense Interval_155217 chr8 27825886 27826082 + 0 NA Intergenic Intergenic -64873 ENSMUSG00000064882.1 ENSMUSG00000064882 ENSMUST00000082948 Gm24202 snRNA Interval_100431 chr2 168977569 168978411 + 0 NA promoter-TSS (ENSMUSG00000086348.1) lincRNA-promoter-TSS (ENSMUSG00000086348.1) -278 ENSMUSG00000086348.1 ENSMUSG00000086348 ENSMUST00000140241 1700017J07Rik lincRNA Interval_144560 chr7 25896953 25898093 + 0 NA promoter-TSS (ENSMUSG00000030483.14) protein_coding-promoter-TSS (ENSMUSG00000030483.14) -15134 ENSMUSG00000091233.3 ENSMUSG00000091233 ENSMUST00000163316 Gm6434 processed_pseudogene Interval_170879 chr9 111496847 111497588 + 0 NA Intergenic Intergenic 51723 ENSMUSG00000106647.1 ENSMUSG00000106647 ENSMUST00000199378 Gm42523 lincRNA Interval_173814 chrX 104798424 104798731 + 0 NA Intergenic Intergenic -18199 ENSMUSG00000100364.1 ENSMUSG00000100364 ENSMUST00000189166 1700121L16Rik lincRNA Interval_70539 chr17 11765632 11765896 + 0 NA intron (ENSMUSG00000023826.16, intron 6 of 10) protein_coding-intron (ENSMUSG00000023826.16, intron 7 of 11) -33419 ENSMUSG00000104466.1 ENSMUSG00000104466 ENSMUST00000194203 Gm10513 TEC Interval_118186 chr4 129419508 129420995 + 0 NA Intergenic Intergenic 12278 ENSMUSG00000048485.12 ENSMUSG00000048485 ENSMUST00000124364 Zbtb8b protein_coding Interval_54845 chr14 75786491 75787354 + 0 NA promoter-TSS (ENSMUSG00000022003.7) protein_coding-promoter-TSS (ENSMUSG00000022003.7) 83 ENSMUSG00000022003.7 ENSMUSG00000022003 ENSMUST00000228379 Slc25a30 protein_coding Interval_55073 chr14 77708950 77709369 + 0 NA intron (ENSMUSG00000022012.9, intron 13 of 13) protein_coding-intron (ENSMUSG00000022012.9, intron 18 of 18) -71815 ENSMUSG00000115257.1 ENSMUSG00000115257 ENSMUST00000227970 Gm30467 lincRNA Interval_15461 chr10 47299485 47300298 + 0 NA Intergenic Intergenic 10684 ENSMUSG00000111719.1 ENSMUSG00000111719 ENSMUST00000213790 Gm19137 processed_pseudogene Interval_91862 chr2 50553896 50554220 + 0 NA Intergenic Intergenic 6144 ENSMUSG00000085429.1 ENSMUSG00000085429 ENSMUST00000146690 Gm13485 lincRNA Interval_154190 chr8 13305353 13306865 + 0 NA intron (ENSMUSG00000038497.7, intron 7 of 12) protein_coding-intron (ENSMUSG00000038497.7, intron 7 of 12) 17871 ENSMUSG00000038497.7 ENSMUSG00000038497 ENSMUST00000210750 Tmco3 protein_coding Interval_26997 chr11 62280755 62282025 + 0 NA promoter-TSS (ENSMUSG00000042298.18) protein_coding-promoter-TSS (ENSMUSG00000042298.18) -15 ENSMUSG00000014243.5 ENSMUSG00000014243 ENSMUST00000072916 Zswim7 protein_coding Interval_58440 chr15 34535835 34536108 + 0 NA Intergenic Intergenic 4257 ENSMUSG00000084607.1 ENSMUSG00000084607 ENSMUST00000122658 Gm22208 snRNA Interval_75292 chr17 65731540 65732133 + 0 NA intron (ENSMUSG00000056515.9, intron 1 of 2) protein_coding-intron (ENSMUSG00000056515.9, intron 1 of 6) 40804 ENSMUSG00000056515.9 ENSMUSG00000056515 ENSMUST00000233258 Rab31 protein_coding Interval_24423 chr11 33162004 33163767 + 0 NA intron (ENSMUSG00000057113.13, intron 1 of 9) protein_coding-intron (ENSMUSG00000057113.13, intron 1 of 10) -5608 ENSMUSG00000057113.13 ENSMUSG00000057113 ENSMUST00000146759 Npm1 protein_coding Interval_15484 chr10 48658853 48659051 + 0 NA Intergenic Intergenic 22905 ENSMUSG00000111436.1 ENSMUSG00000111436 ENSMUST00000214349 Gm47356 processed_pseudogene Interval_114770 chr4 84915869 84916443 + 0 NA exon (ENSMUSG00000083139.1, exon 1 of 1) processed_pseudogene-exon (ENSMUSG00000083139.1, exon 1 of 1) 260 ENSMUSG00000083139.1 ENSMUSG00000083139 ENSMUST00000118116 Gm12418 processed_pseudogene Interval_9952 chr1 164341566 164342793 + 0 NA intron (ENSMUSG00000026575.15, intron 5 of 8) protein_coding-intron (ENSMUSG00000026575.15, intron 4 of 7) 34452 ENSMUSG00000026575.15 ENSMUSG00000026575 ENSMUST00000192710 Nme7 protein_coding Interval_42704 chr13 18204771 18205357 + 0 NA intron (ENSMUSG00000009734.18, intron 3 of 5) protein_coding-intron (ENSMUSG00000009734.18, intron 3 of 7) -104862 ENSMUSG00000113470.1 ENSMUSG00000113470 ENSMUST00000220795 4930448F12Rik lincRNA Interval_153825 chr8 9206635 9208500 + 0 NA exon (ENSMUSG00000079157.4, exon 3 of 3) protein_coding-exon (ENSMUSG00000079157.4, exon 3 of 3) 9843 ENSMUSG00000109040.1 ENSMUSG00000109040 ENSMUST00000208677 Gm44542 TEC Interval_57685 chr15 15442627 15443951 + 0 NA Intergenic Intergenic -118094 ENSMUSG00000114972.1 ENSMUSG00000114972 ENSMUST00000226279 Gm49119 processed_pseudogene Interval_144131 chr7 19572719 19574334 + 0 NA promoter-TSS (ENSMUSG00000044709.6) protein_coding-promoter-TSS (ENSMUSG00000044709.6) 4069 ENSMUSG00000044709.6 ENSMUSG00000044709 ENSMUST00000151646 Gemin7 protein_coding Interval_169359 chr9 96690202 96691174 + 0 NA intron (ENSMUSG00000040433.16, intron 5 of 5) protein_coding-intron (ENSMUSG00000040433.16, intron 2 of 2) -15140 ENSMUSG00000102097.1 ENSMUSG00000102097 ENSMUST00000186821 A930006L05Rik antisense Interval_130576 chr5 128981517 128982178 + 0 NA Intergenic Intergenic 26699 ENSMUSG00000029428.13 ENSMUSG00000029428 ENSMUST00000199813 Stx2 protein_coding Interval_67201 chr16 44379502 44380217 + 0 NA intron (ENSMUSG00000043065.12, intron 6 of 8) protein_coding-intron (ENSMUSG00000043065.12, intron 14 of 17) -14937 ENSMUSG00000071550.14 ENSMUSG00000071550 ENSMUST00000127303 Cfap44 protein_coding Interval_62192 chr15 88716294 88717554 + 0 NA exon (ENSMUSG00000022387.17, exon 3 of 8) protein_coding-exon (ENSMUSG00000022387.17, exon 3 of 8) 2231 ENSMUSG00000022387.17 ENSMUSG00000022387 ENSMUST00000139515 Brd1 protein_coding Interval_103574 chr3 50023998 50024931 + 0 NA intron (ENSMUSG00000027737.10, intron 11 of 11) protein_coding-intron (ENSMUSG00000027737.10, intron 11 of 11) -5205 ENSMUSG00000104457.1 ENSMUSG00000104457 ENSMUST00000195329 Gm37826 processed_pseudogene Interval_97306 chr2 133455654 133456222 + 0 NA Intergenic Intergenic -7180 ENSMUSG00000087585.1 ENSMUSG00000087585 ENSMUST00000125575 Gm14100 lincRNA Interval_88816 chr2 11428252 11428470 + 0 NA Intergenic Intergenic 8137 ENSMUSG00000082314.2 ENSMUSG00000082314 ENSMUST00000117854 Gm13296 processed_pseudogene Interval_124076 chr5 38090126 38091579 + 0 NA intron (ENSMUSG00000029125.14, intron 1 of 8) protein_coding-intron (ENSMUSG00000029125.14, intron 1 of 10) 45245 ENSMUSG00000107276.1 ENSMUSG00000107276 ENSMUST00000202512 Gm42858 TEC Interval_140521 chr6 119215023 119215479 + 0 NA TTS (ENSMUSG00000041477.14) protein_coding-TTS (ENSMUSG00000041477.14) -18361 ENSMUSG00000051331.16 ENSMUSG00000051331 ENSMUST00000239204 Cacna1c protein_coding Interval_99058 chr2 156907533 156908062 + 0 NA intron (ENSMUSG00000080880.1, intron 4 of 11) unprocessed_pseudogene-intron (ENSMUSG00000080880.1, intron 4 of 11) 7586 ENSMUSG00000080880.1 ENSMUSG00000080880 ENSMUST00000117381 Gm14278 unprocessed_pseudogene Interval_128861 chr5 115667412 115668482 + 0 NA intron (ENSMUSG00000041609.16, intron 4 of 4) protein_coding-intron (ENSMUSG00000041609.16, intron 4 of 8) -18153 ENSMUSG00000041609.16 ENSMUSG00000041609 ENSMUST00000148840 Bicdl1 protein_coding Interval_131821 chr5 140103157 140103506 + 0 NA intron (ENSMUSG00000087606.1, intron 1 of 2) protein_coding-intron (ENSMUSG00000029554.15, intron 15 of 17) 2132 ENSMUSG00000087606.1 ENSMUSG00000087606 ENSMUST00000128520 Gm16121 antisense Interval_121422 chr4 155707625 155707972 + 0 NA intron (ENSMUSG00000029038.9, intron 1 of 1) protein_coding-intron (ENSMUSG00000029038.9, intron 1 of 4) 2674 ENSMUSG00000029038.9 ENSMUSG00000029038 ENSMUST00000105595 Ssu72 protein_coding Interval_98241 chr2 150326186 150327637 + 0 NA exon (ENSMUSG00000095315.2, exon 4 of 4) protein_coding-exon (ENSMUSG00000095315.2, exon 4 of 4) 15480 ENSMUSG00000095315.2 ENSMUSG00000095315 ENSMUST00000133235 Gm10130 protein_coding Interval_2968 chr1 51707698 51709039 + 0 NA intron (ENSMUSG00000101741.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000101741.1, intron 1 of 1) -10468 ENSMUSG00000101741.1 ENSMUSG00000101741 ENSMUST00000186769 Gm28055 lincRNA Interval_90593 chr2 31322810 31323238 + 0 NA intron (ENSMUSG00000055632.18, intron 1 of 97) protein_coding-intron (ENSMUSG00000055632.18, intron 1 of 97) 8609 ENSMUSG00000055632.18 ENSMUSG00000055632 ENSMUST00000141294 Hmcn2 protein_coding Interval_40549 chr12 105667507 105668091 + 0 NA intron (ENSMUSG00000041341.10, intron 5 of 10) protein_coding-intron (ENSMUSG00000041341.10, intron 5 of 41) -17602 ENSMUSG00000044715.7 ENSMUSG00000044715 ENSMUST00000222841 Gskip protein_coding Interval_21574 chr10 130136502 130136971 + 0 NA Intergenic Intergenic -3306 ENSMUSG00000108134.1 ENSMUSG00000108134 ENSMUST00000205012 Gm9560 processed_pseudogene Interval_60634 chr15 75841514 75842360 + 0 NA promoter-TSS (ENSMUSG00000075600.3) protein_coding-promoter-TSS (ENSMUSG00000075600.3) -13728 ENSMUSG00000075600.3 ENSMUSG00000075600 ENSMUST00000229000 Zc3h3 protein_coding Interval_83189 chr18 82659517 82660021 + 0 NA intron (ENSMUSG00000041258.18, intron 6 of 29) protein_coding-intron (ENSMUSG00000041258.18, intron 6 of 29) 8716 ENSMUSG00000118160.1 ENSMUSG00000118160 ENSMUST00000237388 Gm50347 unprocessed_pseudogene Interval_120905 chr4 151451941 151452637 + 0 NA intron (ENSMUSG00000014592.21, intron 5 of 24) protein_coding-intron (ENSMUSG00000014592.21, intron 5 of 23) 75819 ENSMUSG00000085593.1 ENSMUSG00000085593 ENSMUST00000129097 4930589P08Rik antisense Interval_22107 chr11 6378501 6378937 + 0 NA Intergenic Intergenic -18010 ENSMUSG00000041164.15 ENSMUSG00000041164 ENSMUST00000124588 Zmiz2 protein_coding Interval_130725 chr5 129993480 129993751 + 0 NA intron (ENSMUSG00000025534.17, intron 8 of 10) protein_coding-intron (ENSMUSG00000025534.17, intron 9 of 11) 9213 ENSMUSG00000025534.17 ENSMUSG00000025534 ENSMUST00000122994 Gusb protein_coding Interval_32044 chr11 104660665 104662026 + 0 NA intron (ENSMUSG00000020689.4, intron 8 of 10) protein_coding-intron (ENSMUSG00000020689.4, intron 12 of 14) 19310 ENSMUSG00000083748.1 ENSMUSG00000083748 ENSMUST00000121389 Gm11662 processed_pseudogene Interval_174574 chrX 159264653 159264945 + 0 NA intron (ENSMUSG00000031309.15, intron 1 of 5) protein_coding-intron (ENSMUSG00000031309.15, intron 1 of 21) -11477 ENSMUSG00000031309.15 ENSMUSG00000031309 ENSMUST00000149939 Rps6ka3 protein_coding Interval_20914 chr10 121971772 121972832 + 0 NA intron (ENSMUSG00000020121.15, intron 1 of 3) protein_coding-intron (ENSMUSG00000020121.15, intron 1 of 21) 75013 ENSMUSG00000020121.15 ENSMUSG00000020121 ENSMUST00000162710 Srgap1 protein_coding Interval_18180 chr10 83343978 83344664 + 0 NA promoter-TSS (ENSMUSG00000112134.1) lincRNA-promoter-TSS (ENSMUSG00000112134.1) -192 ENSMUSG00000112134.1 ENSMUSG00000112134 ENSMUST00000219407 Gm40723 lincRNA Interval_143005 chr6 148294185 148295107 + 0 NA exon (ENSMUSG00000030306.14, exon 10 of 20) protein_coding-exon (ENSMUSG00000030306.14, exon 10 of 20) 33496 ENSMUSG00000082199.1 ENSMUSG00000082199 ENSMUST00000120136 Gm15763 processed_pseudogene Interval_1316 chr1 20477446 20478637 + 0 NA intron (ENSMUSG00000043760.16, intron 35 of 66) protein_coding-intron (ENSMUSG00000043760.16, intron 35 of 66) -33129 ENSMUSG00000070175.1 ENSMUSG00000070175 ENSMUST00000093665 Gm24162 snRNA Interval_132364 chr5 144479325 144480292 + 0 NA Intergenic Intergenic -66094 ENSMUSG00000059991.7 ENSMUSG00000059991 ENSMUST00000071782 Nptx2 protein_coding Interval_172098 chrX 7559852 7561084 + 0 NA intron (ENSMUSG00000039556.16, intron 2 of 2) protein_coding-intron (ENSMUSG00000039556.16, intron 2 of 2) -12988 ENSMUSG00000088477.1 ENSMUSG00000088477 ENSMUST00000157852 Gm23082 snoRNA Interval_118911 chr4 134416172 134417350 + 0 NA intron (ENSMUSG00000037366.14, intron 4 of 6) protein_coding-intron (ENSMUSG00000037366.14, intron 7 of 10) 19438 ENSMUSG00000037366.14 ENSMUSG00000037366 ENSMUST00000145626 Pafah2 protein_coding Interval_132892 chr5 148558891 148559861 + 0 NA Intergenic Intergenic -5515 ENSMUSG00000106899.1 ENSMUSG00000106899 ENSMUST00000202969 1700013A02Rik TEC Interval_116198 chr4 108644695 108645543 + 0 NA intron (ENSMUSG00000034557.14, intron 15 of 17) protein_coding-intron (ENSMUSG00000034557.14, intron 13 of 15) -7678 ENSMUSG00000091985.1 ENSMUSG00000091985 ENSMUST00000170933 Gm17354 lincRNA Interval_37273 chr12 64366750 64367047 + 0 NA Intergenic Intergenic 107792 ENSMUSG00000043060.8 ENSMUSG00000043060 ENSMUST00000059833 Fscb protein_coding Interval_158823 chr8 86872662 86873429 + 0 NA intron (ENSMUSG00000031652.11, intron 1 of 6) protein_coding-intron (ENSMUSG00000031652.11, intron 1 of 6) -12643 ENSMUSG00000098434.1 ENSMUSG00000098434 ENSMUST00000184161 2010110E17Rik lincRNA Interval_71901 chr17 26884842 26886738 + 0 NA intron (ENSMUSG00000092539.2, intron 2 of 2) lincRNA-intron (ENSMUSG00000078838.3, intron 1 of 1) 412 ENSMUSG00000078838.3 ENSMUSG00000078838 ENSMUST00000108741 Gm17382 lincRNA Interval_36570 chr12 50595222 50595451 + 0 NA intron (ENSMUSG00000002688.8, intron 1 of 18) protein_coding-intron (ENSMUSG00000002688.8, intron 1 of 18) 53762 ENSMUSG00000002688.8 ENSMUSG00000002688 ENSMUST00000002765 Prkd1 protein_coding Interval_74358 chr17 49427792 49428869 + 0 NA promoter-TSS (ENSMUSG00000064120.14) protein_coding-promoter-TSS (ENSMUSG00000064120.14) -112 ENSMUSG00000064120.14 ENSMUSG00000064120 ENSMUST00000173430 Mocs1 protein_coding Interval_110055 chr3 152821278 152822049 + 0 NA exon (ENSMUSG00000039037.5, exon 5 of 5) protein_coding-exon (ENSMUSG00000039037.5, exon 5 of 5) -39602 ENSMUSG00000090095.1 ENSMUSG00000090095 ENSMUST00000161849 Rpl29-ps1 processed_pseudogene Interval_143648 chr7 13749538 13749882 + 0 NA intron (ENSMUSG00000070811.6, intron 3 of 3) protein_coding-intron (ENSMUSG00000070811.6, intron 3 of 3) -3121 ENSMUSG00000099901.1 ENSMUSG00000099901 ENSMUST00000187003 Zbed4-ps2 processed_pseudogene Interval_103968 chr3 55660545 55661072 + 0 NA intron (ENSMUSG00000027799.12, intron 3 of 12) protein_coding-intron (ENSMUSG00000027799.12, intron 49 of 57) -78078 ENSMUSG00000106334.1 ENSMUSG00000106334 ENSMUST00000198856 Gm43549 lincRNA Interval_32152 chr11 105669269 105669560 + 0 NA intron (ENSMUSG00000053580.16, intron 2 of 4) protein_coding-intron (ENSMUSG00000053580.16, intron 2 of 25) -4008 ENSMUSG00000053580.16 ENSMUSG00000053580 ENSMUST00000147975 Tanc2 protein_coding Interval_22604 chr11 12237162 12237401 + 0 NA exon (ENSMUSG00000020173.17, exon 15 of 15) protein_coding-exon (ENSMUSG00000020173.17, exon 15 of 15) -84994 ENSMUSG00000086584.8 ENSMUSG00000086584 ENSMUST00000174550 Gm12002 antisense Interval_24015 chr11 29514472 29515867 + 0 NA promoter-TSS (ENSMUSG00000032673.5) protein_coding-promoter-TSS (ENSMUSG00000032673.5) 83 ENSMUSG00000085165.1 ENSMUSG00000085165 ENSMUST00000138402 Gm12089 antisense Interval_22512 chr11 11279281 11279504 + 0 NA TTS (ENSMUSG00000020193.3) protein_coding-TTS (ENSMUSG00000020193.3) -33041 ENSMUSG00000082875.1 ENSMUSG00000082875 ENSMUST00000117333 Gm12598 processed_pseudogene Interval_82827 chr18 77254181 77255224 + 0 NA exon (ENSMUSG00000025425.18, exon 8 of 8) protein_coding-exon (ENSMUSG00000025425.18, exon 8 of 8) -1212 ENSMUSG00000025425.18 ENSMUSG00000025425 ENSMUST00000236592 St8sia5 protein_coding Interval_15338 chr10 44721663 44722274 + 0 NA Intergenic Intergenic 6410 ENSMUSG00000111362.1 ENSMUSG00000111362 ENSMUST00000216787 Gm47389 lincRNA Interval_110672 chr4 6170768 6171121 + 0 NA Intergenic Intergenic -20154 ENSMUSG00000028243.5 ENSMUSG00000028243 ENSMUST00000029907 Ubxn2b protein_coding Interval_95237 chr2 105087975 105088185 + 0 NA intron (ENSMUSG00000074987.9, intron 4 of 6) antisense-intron (ENSMUSG00000074987.9, intron 1 of 3) -3938 ENSMUSG00000079175.1 ENSMUSG00000079175 ENSMUST00000111107 Gm11060 protein_coding Interval_34910 chr12 13268614 13270055 + 0 NA intron (ENSMUSG00000020576.10, intron 1 of 51) protein_coding-intron (ENSMUSG00000020576.10, intron 1 of 51) -20171 ENSMUSG00000037149.10 ENSMUSG00000037149 ENSMUST00000221623 Ddx1 protein_coding Interval_69791 chr16 96357806 96358380 + 0 NA Intergenic Intergenic -3701 ENSMUSG00000117081.1 ENSMUSG00000117081 ENSMUST00000113795 Gm49948 protein_coding Interval_5238 chr1 86647174 86648263 + 0 NA Intergenic Intergenic 9517 ENSMUSG00000103609.1 ENSMUSG00000103609 ENSMUST00000192517 Gm37022 TEC Interval_112996 chr4 46683750 46684217 + 0 NA intron (ENSMUSG00000039809.10, intron 2 of 3) protein_coding-intron (ENSMUSG00000039809.10, intron 14 of 18) -33774 ENSMUSG00000039813.14 ENSMUSG00000039813 ENSMUST00000107750 Tbc1d2 protein_coding Interval_49306 chr13 110490137 110491013 + 0 NA Intergenic Intergenic 94563 ENSMUSG00000021701.8 ENSMUSG00000021701 ENSMUST00000225156 Plk2 protein_coding Interval_86041 chr19 35761946 35762211 + 0 NA intron (ENSMUSG00000118212.1, intron 1 of 6) lincRNA-intron (ENSMUSG00000118212.1, intron 1 of 6) -2013 ENSMUSG00000077205.1 ENSMUSG00000077205 ENSMUST00000104017 Gm25611 snoRNA Interval_87341 chr19 47834675 47836086 + 0 NA intron (ENSMUSG00000044948.17, intron 2 of 37) protein_coding-intron (ENSMUSG00000044948.17, intron 2 of 13) -19658 ENSMUSG00000025068.8 ENSMUSG00000025068 ENSMUST00000143694 Gsto1 protein_coding Interval_24452 chr11 33381177 33381835 + 0 NA intron (ENSMUSG00000040594.19, intron 2 of 9) protein_coding-intron (ENSMUSG00000040594.19, intron 14 of 27) 13760 ENSMUSG00000069913.3 ENSMUSG00000069913 ENSMUST00000118265 Anp32-ps processed_pseudogene Interval_117491 chr4 124133298 124136065 + 0 NA Intergenic Intergenic 144496 ENSMUSG00000103541.1 ENSMUSG00000103541 ENSMUST00000193103 Gm37667 TEC Interval_135093 chr6 35333862 35334516 + 0 NA intron (ENSMUSG00000107341.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000107341.1, intron 1 of 2) 3343 ENSMUSG00000107341.1 ENSMUSG00000107341 ENSMUST00000201560 1700065J11Rik lincRNA Interval_154645 chr8 22270445 22270646 + 0 NA Intergenic Intergenic -12896 ENSMUSG00000031481.8 ENSMUSG00000031481 ENSMUST00000077194 Tpte protein_coding Interval_129078 chr5 117286651 117288165 + 0 NA intron (ENSMUSG00000032959.12, intron 1 of 4) protein_coding-intron (ENSMUSG00000032959.12, intron 1 of 3) 160 ENSMUSG00000032959.12 ENSMUSG00000032959 ENSMUST00000139913 Pebp1 protein_coding Interval_111012 chr4 11205044 11205236 + 0 NA TTS (ENSMUSG00000028212.16) protein_coding-TTS (ENSMUSG00000028212.16) 13786 ENSMUSG00000028212.16 ENSMUSG00000028212 ENSMUST00000149075 Ccne2 protein_coding Interval_106295 chr3 95216835 95218962 + 0 NA promoter-TSS (ENSMUSG00000038766.16) protein_coding-promoter-TSS (ENSMUSG00000038766.16) 18 ENSMUSG00000038766.16 ENSMUSG00000038766 ENSMUST00000145272 Gabpb2 protein_coding Interval_22561 chr11 11793716 11794487 + 0 NA intron (ENSMUSG00000035455.12, intron 3 of 3) protein_coding-intron (ENSMUSG00000035455.12, intron 1 of 2) 14861 ENSMUSG00000035455.12 ENSMUSG00000035455 ENSMUST00000150714 Fignl1 protein_coding Interval_25275 chr11 46063237 46063830 + 0 NA intron (ENSMUSG00000011256.16, intron 3 of 3) protein_coding-intron (ENSMUSG00000011256.16, intron 2 of 22) -11212 ENSMUSG00000069899.3 ENSMUSG00000069899 ENSMUST00000154156 Gm12166 protein_coding Interval_126552 chr5 90203210 90203885 + 0 NA Intergenic Intergenic 12475 ENSMUSG00000035505.14 ENSMUSG00000035505 ENSMUST00000148480 Cox18 protein_coding Interval_42726 chr13 18612206 18612830 + 0 NA Intergenic Intergenic 32831 ENSMUSG00000114118.1 ENSMUSG00000114118 ENSMUST00000221183 Gm48829 lincRNA Interval_64109 chr16 8446996 8447480 + 0 NA Intergenic Intergenic 2548 ENSMUSG00000084475.1 ENSMUSG00000084475 ENSMUST00000122526 Gm25782 misc_RNA Interval_135874 chr6 48094127 48094443 + 0 NA Intergenic Intergenic -12007 ENSMUSG00000057691.8 ENSMUSG00000057691 ENSMUST00000203994 Zfp746 protein_coding Interval_18444 chr10 86029103 86029965 + 0 NA TTS (ENSMUSG00000001786.14) protein_coding-TTS (ENSMUSG00000001786.14) -7205 ENSMUSG00000097692.2 ENSMUSG00000097692 ENSMUST00000181665 A230060F14Rik antisense Interval_65364 chr16 21845625 21846605 + 0 NA promoter-TSS (ENSMUSG00000097401.1) lincRNA-promoter-TSS (ENSMUSG00000097401.1) -339 ENSMUSG00000097401.1 ENSMUSG00000097401 ENSMUST00000181834 Gm26744 lincRNA Interval_165692 chr9 51002358 51002569 + 0 NA intron (ENSMUSG00000037112.16, intron 1 of 3) protein_coding-intron (ENSMUSG00000037112.16, intron 1 of 15) 6537 ENSMUSG00000037112.16 ENSMUSG00000037112 ENSMUST00000176327 Sik2 protein_coding Interval_112644 chr4 43761302 43761501 + 0 NA Intergenic Intergenic 6376 ENSMUSG00000083417.1 ENSMUSG00000083417 ENSMUST00000120783 Olfr269-ps1 unprocessed_pseudogene Interval_67843 chr16 57703629 57703835 + 0 NA intron (ENSMUSG00000068196.5, intron 1 of 3) protein_coding-intron (ENSMUSG00000068196.5, intron 1 of 3) 50983 ENSMUSG00000068196.5 ENSMUSG00000068196 ENSMUST00000232382 Col8a1 protein_coding Interval_3370 chr1 57518602 57518806 + 0 NA exon (ENSMUSG00000101826.1, exon 1 of 1) processed_pseudogene-exon (ENSMUSG00000101826.1, exon 1 of 1) 708 ENSMUSG00000101826.1 ENSMUSG00000101826 ENSMUST00000188636 Gm8581 processed_pseudogene Interval_133823 chr6 12815015 12816285 + 0 NA Intergenic Intergenic -41747 ENSMUSG00000083620.1 ENSMUSG00000083620 ENSMUST00000121833 Gm15529 processed_pseudogene Interval_31723 chr11 102473656 102474090 + 0 NA Intergenic Intergenic -14899 ENSMUSG00000092641.2 ENSMUSG00000092641 ENSMUST00000174900 Gm23563 misc_RNA Interval_130614 chr5 129217207 129218658 + 0 NA Intergenic Intergenic -89415 ENSMUSG00000060419.8 ENSMUSG00000060419 ENSMUST00000140155 Rps16-ps2 processed_pseudogene Interval_5349 chr1 87793178 87793455 + 0 NA TTS (ENSMUSG00000026289.15) protein_coding-TTS (ENSMUSG00000026289.15) 8760 ENSMUSG00000089281.1 ENSMUSG00000089281 ENSMUST00000158656 Scarna6 scaRNA Interval_26290 chr11 55820685 55820879 + 0 NA intron (ENSMUSG00000086020.1, intron 1 of 4) antisense-intron (ENSMUSG00000086020.1, intron 1 of 4) 48694 ENSMUSG00000086020.1 ENSMUSG00000086020 ENSMUST00000134285 Gm12239 antisense Interval_107333 chr3 105940660 105941038 + 0 NA Intergenic Intergenic -12833 ENSMUSG00000074342.3 ENSMUSG00000074342 ENSMUST00000126230 I830077J02Rik protein_coding Interval_17852 chr10 80406264 80407636 + 0 NA promoter-TSS (ENSMUSG00000020163.12) protein_coding-promoter-TSS (ENSMUSG00000020163.12) -155 ENSMUSG00000020163.12 ENSMUSG00000020163 ENSMUST00000141683 Uqcr11 protein_coding Interval_59011 chr15 41667295 41668775 + 0 NA intron (ENSMUSG00000022307.16, intron 3 of 15) protein_coding-intron (ENSMUSG00000022307.16, intron 3 of 15) 120876 ENSMUSG00000097232.1 ENSMUSG00000097232 ENSMUST00000180418 Gm26854 antisense Interval_38749 chr12 81859839 81861175 + 0 NA exon (ENSMUSG00000021140.9, exon 1 of 36) protein_coding-exon (ENSMUSG00000021140.9, exon 1 of 36) 32708 ENSMUSG00000113950.1 ENSMUSG00000113950 ENSMUST00000221799 Gm47080 lincRNA Interval_151164 chr7 118941479 118942029 + 0 NA intron (ENSMUSG00000073856.11, intron 7 of 7) protein_coding-intron (ENSMUSG00000073856.11, intron 8 of 8) 27932 ENSMUSG00000109517.1 ENSMUSG00000109517 ENSMUST00000208287 Gm44763 antisense Interval_68578 chr16 79144952 79145159 + 0 NA Intergenic Intergenic -53958 ENSMUSG00000022857.13 ENSMUSG00000022857 ENSMUST00000060402 Tmprss15 protein_coding Interval_113145 chr4 48602300 48603061 + 0 NA intron (ENSMUSG00000028347.14, intron 1 of 9) protein_coding-intron (ENSMUSG00000028347.14, intron 1 of 9) -34254 ENSMUSG00000028347.14 ENSMUSG00000028347 ENSMUST00000141720 Tmeff1 protein_coding Interval_78885 chr18 21143727 21144461 + 0 NA intron (ENSMUSG00000042680.8, intron 4 of 4) protein_coding-intron (ENSMUSG00000042680.8, intron 4 of 5) -66985 ENSMUSG00000062962.5 ENSMUSG00000062962 ENSMUST00000084199 Gm6378 processed_pseudogene Interval_17639 chr10 78411993 78413373 + 0 NA exon (ENSMUSG00000061032.9, exon 1 of 6) protein_coding-exon (ENSMUSG00000061032.9, exon 1 of 6) 172 ENSMUSG00000061032.9 ENSMUSG00000061032 ENSMUST00000217824 Rrp1 protein_coding Interval_165519 chr9 48972343 48972785 + 0 NA Intergenic Intergenic -7574 ENSMUSG00000008590.4 ENSMUSG00000008590 ENSMUST00000008734 Htr3b protein_coding Interval_143475 chr7 7132588 7133346 + 0 NA exon (ENSMUSG00000063535.7, exon 4 of 4) protein_coding-exon (ENSMUSG00000063535.7, exon 4 of 4) 3757 ENSMUSG00000063535.7 ENSMUSG00000063535 ENSMUST00000032622 Zfp773 protein_coding Interval_43812 chr13 36853049 36853913 + 0 NA intron (ENSMUSG00000114483.1, intron 2 of 2) antisense-intron (ENSMUSG00000114483.1, intron 2 of 2) 11144 ENSMUSG00000114884.1 ENSMUSG00000114884 ENSMUST00000224473 Gm47675 lincRNA Interval_130225 chr5 125062976 125063281 + 0 NA intron (ENSMUSG00000029478.16, intron 17 of 47) protein_coding-intron (ENSMUSG00000029478.16, intron 16 of 45) 5287 ENSMUSG00000105604.1 ENSMUSG00000105604 ENSMUST00000196503 Gm42838 antisense Interval_16958 chr10 70140618 70140863 + 0 NA intron (ENSMUSG00000048701.13, intron 1 of 8) protein_coding-intron (ENSMUSG00000048701.13, intron 1 of 8) -34271 ENSMUSG00000048701.13 ENSMUSG00000048701 ENSMUST00000135607 Ccdc6 protein_coding Interval_145128 chr7 30196169 30196450 + 0 NA intron (ENSMUSG00000001794.13, intron 1 of 11) protein_coding-intron (ENSMUSG00000001794.13, intron 1 of 11) 2355 ENSMUSG00000097817.2 ENSMUSG00000097817 ENSMUST00000181153 Gm26810 antisense Interval_5648 chr1 90527697 90528750 + 0 NA Intergenic Intergenic 7727 ENSMUSG00000103292.1 ENSMUSG00000103292 ENSMUST00000192105 Gm35048 TEC Interval_32148 chr11 105636973 105637456 + 0 NA intron (ENSMUSG00000053580.16, intron 2 of 4) protein_coding-intron (ENSMUSG00000053580.16, intron 2 of 25) -36208 ENSMUSG00000053580.16 ENSMUSG00000053580 ENSMUST00000147975 Tanc2 protein_coding Interval_105491 chr3 86986531 86987184 + 0 NA intron (ENSMUSG00000041750.13, intron 1 of 5) polymorphic_pseudogene-intron (ENSMUSG00000041750.13, intron 1 of 6) 306 ENSMUSG00000041750.13 ENSMUSG00000041750 ENSMUST00000041920 Cd1d2 polymorphic_pseudogene Interval_131400 chr5 136943485 136944240 + 0 NA Intergenic Intergenic -18983 ENSMUSG00000019054.13 ENSMUSG00000019054 ENSMUST00000152658 Fis1 protein_coding Interval_66664 chr16 35950923 35951961 + 0 NA intron (ENSMUSG00000022906.15, intron 1 of 3) protein_coding-intron (ENSMUSG00000022906.15, intron 3 of 9) 3158 ENSMUSG00000022906.15 ENSMUSG00000022906 ENSMUST00000159160 Parp9 protein_coding Interval_72995 chr17 34031372 34032462 + 0 NA promoter-TSS (ENSMUSG00000024327.16) protein_coding-promoter-TSS (ENSMUSG00000024327.16) -235 ENSMUSG00000024327.16 ENSMUSG00000024327 ENSMUST00000171872 Slc39a7 protein_coding Interval_167649 chr9 71529965 71530176 + 0 NA intron (ENSMUSG00000041361.13, intron 9 of 11) protein_coding-intron (ENSMUSG00000041361.13, intron 10 of 12) -44165 ENSMUSG00000032199.13 ENSMUSG00000032199 ENSMUST00000233263 Polr2m protein_coding Interval_131127 chr5 135290984 135291188 + 0 NA TTS (ENSMUSG00000040013.11) protein_coding-TTS (ENSMUSG00000040013.11) 26760 ENSMUSG00000106913.1 ENSMUSG00000106913 ENSMUST00000201947 9430007M09Rik TEC Interval_156321 chr8 47370549 47371812 + 0 NA intron (ENSMUSG00000038143.16, intron 7 of 7) protein_coding-intron (ENSMUSG00000038143.16, intron 7 of 7) 42657 ENSMUSG00000038143.16 ENSMUSG00000038143 ENSMUST00000181417 Stox2 protein_coding Interval_165851 chr9 53818679 53819508 + 0 NA TTS (ENSMUSG00000042195.9) protein_coding-TTS (ENSMUSG00000042195.9) 8376 ENSMUSG00000042195.9 ENSMUSG00000042195 ENSMUST00000216515 Slc35f2 protein_coding Interval_136640 chr6 56878304 56878470 + 0 NA exon (ENSMUSG00000029781.7, exon 10 of 10) protein_coding-exon (ENSMUSG00000029781.7, exon 10 of 10) 28195 ENSMUSG00000108260.1 ENSMUSG00000108260 ENSMUST00000204973 Gm3793 TEC Interval_111833 chr4 31660780 31661685 + 0 NA Intergenic Intergenic 280760 ENSMUSG00000082254.1 ENSMUSG00000082254 ENSMUST00000118967 Gm11922 processed_pseudogene Interval_143187 chr7 4324384 4325319 + 0 NA Intergenic Intergenic -12918 ENSMUSG00000062524.4 ENSMUSG00000062524 ENSMUST00000126417 Ncr1 protein_coding Interval_37308 chr12 65042213 65042568 + 0 NA promoter-TSS (ENSMUSG00000035597.19) protein_coding-promoter-TSS (ENSMUSG00000035597.19) -900 ENSMUSG00000035597.19 ENSMUSG00000035597 ENSMUST00000220729 Prpf39 protein_coding Interval_166317 chr9 58271841 58272528 + 0 NA Intergenic Intergenic 18996 ENSMUSG00000032333.6 ENSMUSG00000032333 ENSMUST00000216864 Stoml1 protein_coding Interval_63109 chr15 99125906 99127149 + 0 NA promoter-TSS (ENSMUSG00000051934.5) protein_coding-promoter-TSS (ENSMUSG00000051934.5) 611 ENSMUSG00000051934.5 ENSMUSG00000051934 ENSMUST00000229663 Spats2 protein_coding Interval_14043 chr10 25942461 25943387 + 0 NA intron (ENSMUSG00000049420.9, intron 1 of 2) protein_coding-intron (ENSMUSG00000049420.9, intron 1 of 2) 43645 ENSMUSG00000112324.1 ENSMUSG00000112324 ENSMUST00000219283 Gm47939 lincRNA Interval_110871 chr4 9184529 9185378 + 0 NA Intergenic Intergenic -25050 ENSMUSG00000075958.1 ENSMUSG00000075958 ENSMUST00000082782 Gm23423 snRNA Interval_46235 chr13 62854608 62855314 + 0 NA exon (ENSMUSG00000021456.8, exon 2 of 7) protein_coding-exon (ENSMUSG00000021456.8, exon 2 of 7) 1348 ENSMUSG00000021456.8 ENSMUSG00000021456 ENSMUST00000222000 Fbp2 protein_coding Interval_162769 chr9 8813121 8813451 + 0 NA Intergenic Intergenic -72298 ENSMUSG00000111602.1 ENSMUSG00000111602 ENSMUST00000214779 Gm32014 lincRNA Interval_91455 chr2 38987433 38988646 + 0 NA Intergenic Intergenic 10219 ENSMUSG00000085755.1 ENSMUSG00000085755 ENSMUST00000141133 Gm13496 antisense Interval_29314 chr11 82882958 82883769 + 0 NA intron (ENSMUSG00000018841.17, intron 4 of 8) protein_coding-intron (ENSMUSG00000018841.17, intron 5 of 9) 7226 ENSMUSG00000018841.17 ENSMUSG00000018841 ENSMUST00000100718 Rad51d protein_coding Interval_95044 chr2 103435978 103437625 + 0 NA intron (ENSMUSG00000027186.15, intron 2 of 6) protein_coding-intron (ENSMUSG00000027186.15, intron 2 of 6) 25113 ENSMUSG00000027186.15 ENSMUSG00000027186 ENSMUST00000152055 Elf5 protein_coding Interval_98619 chr2 153597956 153598444 + 0 NA Intergenic Intergenic 34531 ENSMUSG00000056941.17 ENSMUSG00000056941 ENSMUST00000109782 Commd7 protein_coding Interval_128410 chr5 113179878 113180773 + 0 NA intron (ENSMUSG00000051339.10, intron 5 of 12) protein_coding-intron (ENSMUSG00000051339.10, intron 5 of 12) -14091 ENSMUSG00000106206.1 ENSMUSG00000106206 ENSMUST00000196549 Gm43094 TEC Interval_17719 chr10 79734925 79736175 + 0 NA TTS (ENSMUSG00000020329.12) protein_coding-TTS (ENSMUSG00000020329.12) 11021 ENSMUSG00000020329.12 ENSMUSG00000020329 ENSMUST00000161375 Polrmt protein_coding Interval_89183 chr2 17898854 17900546 + 0 NA Intergenic Intergenic 97258 ENSMUSG00000062651.4 ENSMUSG00000062651 ENSMUST00000105001 H2al2a protein_coding Interval_9664 chr1 160861902 160862259 + 0 NA Intergenic Intergenic 14242 ENSMUSG00000077648.1 ENSMUSG00000077648 ENSMUST00000104460 Gm24988 snoRNA Interval_164517 chr9 37628564 37628861 + 0 NA TTS (ENSMUSG00000001942.8) protein_coding-TTS (ENSMUSG00000001942.8) 14885 ENSMUSG00000001942.8 ENSMUSG00000001942 ENSMUST00000213964 Siae protein_coding Interval_41533 chr12 116049686 116050007 + 0 NA exon (ENSMUSG00000042063.11, exon 1 of 1) protein_coding-exon (ENSMUSG00000042063.11, exon 1 of 1) 2070 ENSMUSG00000042063.11 ENSMUSG00000042063 ENSMUST00000182883 Zfp386 protein_coding Interval_124747 chr5 53651525 53652699 + 0 NA TTS (ENSMUSG00000039191.12) protein_coding-TTS (ENSMUSG00000039191.12) 13480 ENSMUSG00000039191.12 ENSMUSG00000039191 ENSMUST00000202092 Rbpj protein_coding Interval_20207 chr10 115836704 115837335 + 0 NA intron (ENSMUSG00000034127.15, intron 6 of 8) protein_coding-intron (ENSMUSG00000034127.15, intron 5 of 7) 20187 ENSMUSG00000034127.15 ENSMUSG00000034127 ENSMUST00000035563 Tspan8 protein_coding Interval_119543 chr4 138282488 138283278 + 0 NA intron (ENSMUSG00000028758.12, intron 6 of 11) protein_coding-intron (ENSMUSG00000028758.12, intron 6 of 14) 20411 ENSMUSG00000028758.12 ENSMUSG00000028758 ENSMUST00000105820 Kif17 protein_coding Interval_9071 chr1 153406737 153408432 + 0 NA intron (ENSMUSG00000073538.10, intron 3 of 3) processed_transcript-intron (ENSMUSG00000073538.10, intron 2 of 2) 6649 ENSMUSG00000073538.10 ENSMUSG00000073538 ENSMUST00000188717 E330020D12Rik processed_transcript Interval_159378 chr8 94174502 94175121 + 0 NA Intergenic Intergenic -1399 ENSMUSG00000110588.1 ENSMUSG00000110588 ENSMUST00000211992 Gm45774 antisense Interval_92251 chr2 57325748 57325959 + 0 NA intron (ENSMUSG00000026827.12, intron 6 of 16) protein_coding-intron (ENSMUSG00000026827.12, intron 6 of 16) -50167 ENSMUSG00000084292.1 ENSMUSG00000084292 ENSMUST00000118714 Gm13535 processed_pseudogene Interval_131318 chr5 136399144 136399359 + 0 NA intron (ENSMUSG00000086220.1, intron 3 of 4) protein_coding-intron (ENSMUSG00000029705.17, intron 3 of 23) -23448 ENSMUSG00000106479.1 ENSMUSG00000106479 ENSMUST00000200230 Mir721 miRNA Interval_4826 chr1 79856887 79857192 + 0 NA TTS (ENSMUSG00000026249.10) protein_coding-TTS (ENSMUSG00000026249.10) -36735 ENSMUSG00000026249.10 ENSMUSG00000026249 ENSMUST00000191026 Serpine2 protein_coding Interval_97072 chr2 130961620 130962050 + 0 NA intron (ENSMUSG00000027312.14, intron 10 of 23) protein_coding-intron (ENSMUSG00000027312.14, intron 10 of 28) -26149 ENSMUSG00000083953.1 ENSMUSG00000083953 ENSMUST00000121009 Gm14049 processed_pseudogene Interval_159232 chr8 92004574 92005638 + 0 NA intron (ENSMUSG00000110274.1, intron 1 of 3) lincRNA-intron (ENSMUSG00000110274.1, intron 1 of 3) 7512 ENSMUSG00000110274.1 ENSMUSG00000110274 ENSMUST00000209303 Gm36843 lincRNA Interval_19036 chr10 93969018 93969655 + 0 NA exon (ENSMUSG00000036099.16, exon 12 of 12) protein_coding-exon (ENSMUSG00000036099.16, exon 12 of 12) -5473 ENSMUSG00000065607.1 ENSMUSG00000065607 ENSMUST00000083673 Mir331 miRNA Interval_69750 chr16 96030872 96031528 + 0 NA intron (ENSMUSG00000022914.17, intron 26 of 40) protein_coding-intron (ENSMUSG00000022914.17, intron 26 of 41) -4890 ENSMUSG00000085884.1 ENSMUSG00000085884 ENSMUST00000146222 Gm15342 processed_transcript Interval_92287 chr2 58357183 58358379 + 0 NA promoter-TSS (ENSMUSG00000026834.13) protein_coding-promoter-TSS (ENSMUSG00000026834.13) 19434 ENSMUSG00000082408.1 ENSMUSG00000082408 ENSMUST00000119044 Gm13545 processed_pseudogene Interval_160076 chr8 106226417 106227350 + 0 NA intron (ENSMUSG00000060098.11, intron 4 of 9) protein_coding-intron (ENSMUSG00000060098.11, intron 4 of 17) -7642 ENSMUSG00000060098.11 ENSMUSG00000060098 ENSMUST00000134151 Prmt7 protein_coding Interval_28309 chr11 75102535 75103548 + 0 NA intron (ENSMUSG00000038290.15, intron 4 of 4) protein_coding-intron (ENSMUSG00000038290.15, intron 13 of 18) -31828 ENSMUSG00000082481.1 ENSMUSG00000082481 ENSMUST00000119773 Rps12-ps19 processed_pseudogene Interval_67483 chr16 49721924 49723848 + 0 NA intron (ENSMUSG00000032965.11, intron 5 of 10) protein_coding-intron (ENSMUSG00000032965.11, intron 5 of 10) 23582 ENSMUSG00000032965.11 ENSMUSG00000032965 ENSMUST00000140914 Ift57 protein_coding Interval_110354 chr3 157334527 157334863 + 0 NA Intergenic Intergenic -31303 ENSMUSG00000064510.1 ENSMUSG00000064510 ENSMUST00000082576 Gm22458 snRNA Interval_10546 chr1 171689545 171690491 + 0 NA TTS (ENSMUSG00000103883.1) TEC-TTS (ENSMUSG00000103883.1) 1707 ENSMUSG00000103883.1 ENSMUSG00000103883 ENSMUST00000194539 Gm37010 TEC Interval_169994 chr9 103479745 103480174 + 0 NA exon (ENSMUSG00000032556.11, exon 1 of 7) protein_coding-exon (ENSMUSG00000032556.11, exon 1 of 7) -9367 ENSMUSG00000085168.2 ENSMUSG00000085168 ENSMUST00000215604 Gm16252 antisense Interval_4079 chr1 67542434 67543104 + 0 NA Intergenic Intergenic -42284 ENSMUSG00000082473.1 ENSMUSG00000082473 ENSMUST00000119302 Kif22-ps processed_pseudogene Interval_55642 chr14 97518786 97519015 + 0 NA Intergenic Intergenic 147391 ENSMUSG00000115598.1 ENSMUSG00000115598 ENSMUST00000227015 Gm9290 processed_pseudogene Interval_55784 chr14 100097347 100097616 + 0 NA intron (ENSMUSG00000072294.5, intron 3 of 7) protein_coding-intron (ENSMUSG00000072294.5, intron 2 of 6) -115708 ENSMUSG00000054391.12 ENSMUSG00000054391 ENSMUST00000145018 4930517O19Rik antisense Interval_137331 chr6 71409650 71410765 + 0 NA intron (ENSMUSG00000002222.14, intron 4 of 8) protein_coding-intron (ENSMUSG00000002222.14, intron 4 of 8) -10914 ENSMUSG00000002222.14 ENSMUSG00000002222 ENSMUST00000123947 Rmnd5a protein_coding Interval_153861 chr8 10065150 10065462 + 0 NA intron (ENSMUSG00000109545.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000109545.1, intron 1 of 2) 252 ENSMUSG00000109545.1 ENSMUSG00000109545 ENSMUST00000207605 Gm44788 lincRNA Interval_86086 chr19 36475926 36476224 + 0 NA Intergenic Intergenic -24918 ENSMUSG00000114235.1 ENSMUSG00000114235 ENSMUST00000224716 F530104D19Rik antisense Interval_133069 chr5 149621814 149622604 + 0 NA exon (ENSMUSG00000029657.15, exon 12 of 12) protein_coding-exon (ENSMUSG00000029657.15, exon 12 of 12) 14129 ENSMUSG00000029657.15 ENSMUSG00000029657 ENSMUST00000201666 Hsph1 protein_coding Interval_161203 chr8 118535554 118536674 + 0 NA intron (ENSMUSG00000031841.19, intron 2 of 7) protein_coding-intron (ENSMUSG00000031841.19, intron 2 of 13) 74385 ENSMUSG00000110548.1 ENSMUSG00000110548 ENSMUST00000212267 Gm45721 antisense Interval_102733 chr3 30665368 30665705 + 0 NA intron (ENSMUSG00000027703.16, intron 6 of 6) protein_coding-intron (ENSMUSG00000027703.16, intron 5 of 5) -17667 ENSMUSG00000027702.7 ENSMUSG00000027702 ENSMUST00000029252 Lrrc34 protein_coding Interval_133418 chr6 4915492 4915934 + 0 NA intron (ENSMUSG00000032827.15, intron 1 of 17) protein_coding-intron (ENSMUSG00000032827.15, intron 2 of 15) 10297 ENSMUSG00000032827.15 ENSMUSG00000032827 ENSMUST00000065842 Ppp1r9a protein_coding Interval_79753 chr18 34912027 34912488 + 0 NA intron (ENSMUSG00000024360.8, intron 4 of 10) protein_coding-intron (ENSMUSG00000024360.8, intron 4 of 10) 19750 ENSMUSG00000024360.8 ENSMUSG00000024360 ENSMUST00000025218 Etf1 protein_coding Interval_11410 chr1 181776669 181777541 + 0 NA intron (ENSMUSG00000047369.17, intron 72 of 84) protein_coding-intron (ENSMUSG00000047369.17, intron 71 of 83) 36595 ENSMUSG00000064970.1 ENSMUSG00000064970 ENSMUST00000083036 Gm23690 snRNA Interval_90888 chr2 33225258 33226275 + 0 NA intron (ENSMUSG00000004105.8, intron 1 of 2) protein_coding-intron (ENSMUSG00000004105.8, intron 1 of 4) 9649 ENSMUSG00000004105.8 ENSMUSG00000004105 ENSMUST00000193373 Angptl2 protein_coding Interval_21218 chr10 127273762 127275091 + 0 NA intron (ENSMUSG00000025410.10, intron 2 of 13) protein_coding-intron (ENSMUSG00000025410.10, intron 2 of 13) -2514 ENSMUSG00000025410.10 ENSMUSG00000025410 ENSMUST00000218752 Dctn2 protein_coding Interval_166134 chr9 56936868 56938700 + 0 NA exon (ENSMUSG00000032288.9, exon 1 of 1) protein_coding-exon (ENSMUSG00000032288.9, exon 1 of 1) 309 ENSMUSG00000032288.9 ENSMUSG00000032288 ENSMUST00000034827 Imp3 protein_coding Interval_141037 chr6 124523197 124523616 + 0 NA TTS (ENSMUSG00000055172.10) protein_coding-TTS (ENSMUSG00000055172.10) -7505 ENSMUSG00000089961.1 ENSMUSG00000089961 ENSMUST00000160967 Gm16567 antisense Interval_64968 chr16 17584238 17584560 + 0 NA Intergenic Intergenic -7728 ENSMUSG00000022756.17 ENSMUSG00000022756 ENSMUST00000232186 Slc7a4 protein_coding Interval_81993 chr18 66974516 66975027 + 0 NA exon (ENSMUSG00000117798.1, exon 1 of 2) lincRNA-exon (ENSMUSG00000117798.1, exon 1 of 2) 606 ENSMUSG00000117798.1 ENSMUSG00000117798 ENSMUST00000237275 Gm50164 lincRNA Interval_41642 chr12 117309222 117310178 + 0 NA intron (ENSMUSG00000101930.1, intron 1 of 1) antisense-intron (ENSMUSG00000101930.1, intron 1 of 1) 27312 ENSMUSG00000101930.1 ENSMUSG00000101930 ENSMUST00000186454 Gm5441 antisense Interval_36705 chr12 52289174 52289817 + 0 NA intron (ENSMUSG00000035142.18, intron 8 of 10) protein_coding-intron (ENSMUSG00000035142.18, intron 8 of 10) 113408 ENSMUSG00000035142.18 ENSMUSG00000035142 ENSMUST00000162111 Nubpl protein_coding Interval_11825 chr1 185929753 185930011 + 0 NA Intergenic Intergenic -50997 ENSMUSG00000102546.1 ENSMUSG00000102546 ENSMUST00000194568 Gm9722 processed_pseudogene Interval_72442 chr17 29831793 29832378 + 0 NA TTS (ENSMUSG00000043557.16) protein_coding-TTS (ENSMUSG00000043557.16) 7896 ENSMUSG00000043557.16 ENSMUSG00000043557 ENSMUST00000167102 Mdga1 protein_coding Interval_36753 chr12 53042892 53043094 + 0 NA intron (ENSMUSG00000061603.8, intron 8 of 11) protein_coding-intron (ENSMUSG00000061603.8, intron 9 of 13) 3833 ENSMUSG00000070192.1 ENSMUSG00000070192 ENSMUST00000093682 n-R5s58 rRNA Interval_155854 chr8 40296561 40296961 + 0 NA intron (ENSMUSG00000031603.14, intron 1 of 2) protein_coding-intron (ENSMUSG00000031603.14, intron 1 of 2) 11168 ENSMUSG00000098431.1 ENSMUSG00000098431 ENSMUST00000183849 Mir7666 miRNA Interval_80968 chr18 51617698 51618050 + 0 NA Intergenic Intergenic -10206 ENSMUSG00000077317.1 ENSMUSG00000077317 ENSMUST00000104129 Gm25785 snRNA Interval_44739 chr13 48130540 48132070 + 0 NA intron (ENSMUSG00000114457.1, intron 2 of 3) antisense-intron (ENSMUSG00000097622.2, intron 1 of 2) 99532 ENSMUSG00000114810.1 ENSMUSG00000114810 ENSMUST00000223995 Gm36101 lincRNA Interval_58677 chr15 36997678 36997893 + 0 NA exon (ENSMUSG00000062397.8, exon 4 of 4) protein_coding-exon (ENSMUSG00000062397.8, exon 4 of 4) 6273 ENSMUSG00000062397.8 ENSMUSG00000062397 ENSMUST00000228275 Zfp706 protein_coding Interval_45625 chr13 56334148 56335472 + 0 NA Intergenic Intergenic 7718 ENSMUSG00000088149.1 ENSMUSG00000088149 ENSMUST00000157524 Gm24716 snRNA Interval_26340 chr11 56732144 56732427 + 0 NA Intergenic Intergenic 249336 ENSMUSG00000088228.1 ENSMUSG00000088228 ENSMUST00000157603 Gm22603 snoRNA Interval_65095 chr16 19050920 19051137 + 0 NA promoter-TSS (ENSMUSG00000106567.1) antisense-promoter-TSS (ENSMUSG00000106567.1) -339 ENSMUSG00000106567.1 ENSMUSG00000106567 ENSMUST00000198927 2010309G21Rik antisense Interval_6963 chr1 121425499 121425918 + 0 NA Intergenic Intergenic -5367 ENSMUSG00000026339.18 ENSMUSG00000026339 ENSMUST00000152959 Ccdc93 protein_coding Interval_123187 chr5 30482113 30482548 + 0 NA intron (ENSMUSG00000029182.10, intron 3 of 3) protein_coding-intron (ENSMUSG00000029182.10, intron 3 of 3) 16275 ENSMUSG00000029182.10 ENSMUSG00000029182 ENSMUST00000114743 Fam166c protein_coding Interval_15193 chr10 43275908 43276903 + 0 NA intron (ENSMUSG00000038240.13, intron 1 of 7) protein_coding-intron (ENSMUSG00000038240.13, intron 1 of 7) -42955 ENSMUSG00000089673.1 ENSMUSG00000089673 ENSMUST00000159442 Gm16546 processed_pseudogene Interval_154144 chr8 13032838 13033058 + 0 NA intron (ENSMUSG00000031443.7, intron 5 of 7) protein_coding-intron (ENSMUSG00000031443.7, intron 5 of 7) -4890 ENSMUSG00000031444.16 ENSMUSG00000031444 ENSMUST00000152034 F10 protein_coding Interval_110037 chr3 152702600 152703269 + 0 NA Intergenic Intergenic -11189 ENSMUSG00000039047.17 ENSMUSG00000039047 ENSMUST00000160651 Pigk protein_coding Interval_130062 chr5 124012904 124013954 + 0 NA intron (ENSMUSG00000066278.6, intron 1 of 3) protein_coding-intron (ENSMUSG00000066278.6, intron 1 of 3) 8781 ENSMUSG00000102725.2 ENSMUSG00000102725 ENSMUST00000192309 Gm37939 TEC Interval_135198 chr6 37441665 37442879 + 0 NA promoter-TSS (ENSMUSG00000038648.5) protein_coding-promoter-TSS (ENSMUSG00000038648.5) -97409 ENSMUSG00000038641.12 ENSMUSG00000038641 ENSMUST00000123648 Akr1d1 protein_coding Interval_38980 chr12 84249347 84249702 + 0 NA Intergenic Intergenic 9449 ENSMUSG00000042962.5 ENSMUSG00000042962 ENSMUST00000058103 Gm5436 processed_pseudogene Interval_126946 chr5 98069172 98069605 + 0 NA Intergenic Intergenic 6530 ENSMUSG00000105441.1 ENSMUSG00000105441 ENSMUST00000199755 Gm8041 processed_pseudogene Interval_71365 chr17 22711973 22712416 + 0 NA Intergenic Intergenic 4743 ENSMUSG00000117183.1 ENSMUSG00000117183 ENSMUST00000232973 Gm20008 processed_pseudogene Interval_84340 chr19 10218887 10219544 + 0 NA intron (ENSMUSG00000036098.15, intron 10 of 24) protein_coding-intron (ENSMUSG00000036098.15, intron 10 of 26) 13182 ENSMUSG00000036372.14 ENSMUSG00000036372 ENSMUST00000166412 Tmem258 protein_coding Interval_87044 chr19 45775112 45775396 + 0 NA intron (ENSMUSG00000025220.8, intron 4 of 7) protein_coding-intron (ENSMUSG00000025220.8, intron 5 of 15) -3368 ENSMUSG00000025220.8 ENSMUSG00000025220 ENSMUST00000235448 Oga protein_coding Interval_10962 chr1 177607386 177608978 + 0 NA Intergenic Intergenic -13660 ENSMUSG00000102885.1 ENSMUSG00000102885 ENSMUST00000194583 Gm37280 lincRNA Interval_1720 chr1 32588244 32588740 + 0 NA intron (ENSMUSG00000026058.11, intron 6 of 8) protein_coding-intron (ENSMUSG00000026058.11, intron 6 of 8) -20071 ENSMUSG00000089489.1 ENSMUSG00000089489 ENSMUST00000158864 Gm24732 snRNA Interval_59984 chr15 62693699 62694167 + 0 NA intron (ENSMUSG00000115862.1, intron 2 of 3) lincRNA-intron (ENSMUSG00000115862.1, intron 2 of 3) -40929 ENSMUSG00000093058.1 ENSMUSG00000093058 ENSMUST00000175317 Gm24810 miRNA Interval_1164 chr1 16461506 16462034 + 0 NA intron (ENSMUSG00000025920.19, intron 3 of 3) protein_coding-intron (ENSMUSG00000025920.19, intron 3 of 12) 57536 ENSMUSG00000025920.19 ENSMUSG00000025920 ENSMUST00000144138 Stau2 protein_coding Interval_67363 chr16 48032037 48032347 + 0 NA Intergenic Intergenic -40805 ENSMUSG00000067716.3 ENSMUSG00000067716 ENSMUST00000088296 Gm7275 processed_pseudogene Interval_121132 chr4 153338977 153339499 + 0 NA Intergenic Intergenic 121062 ENSMUSG00000087454.1 ENSMUSG00000087454 ENSMUST00000126141 Gm13174 lincRNA Interval_39827 chr12 98776925 98777334 + 0 NA intron (ENSMUSG00000021012.16, intron 6 of 6) protein_coding-intron (ENSMUSG00000021012.16, intron 2 of 6) 11024 ENSMUSG00000113196.1 ENSMUSG00000113196 ENSMUST00000220865 D230049E03Rik TEC Interval_65836 chr16 29682507 29684305 + 0 NA Intergenic Intergenic 70906 ENSMUSG00000116814.1 ENSMUSG00000116814 ENSMUST00000232037 Gm49636 lincRNA Interval_66870 chr16 38231481 38231853 + 0 NA intron (ENSMUSG00000022812.14, intron 11 of 11) protein_coding-intron (ENSMUSG00000022812.14, intron 10 of 10) 23629 ENSMUSG00000022812.14 ENSMUSG00000022812 ENSMUST00000231437 Gsk3b protein_coding Interval_35330 chr12 20681138 20681476 + 0 NA Intergenic Intergenic 14966 ENSMUSG00000116635.1 ENSMUSG00000116635 ENSMUST00000232444 Gm49699 transcribed_unprocessed_pseudogene Interval_86021 chr19 34977273 34978155 + 0 NA Intergenic Intergenic 2567 ENSMUSG00000024795.11 ENSMUSG00000024795 ENSMUST00000225625 Kif20b protein_coding Interval_105126 chr3 82028985 82029599 + 0 NA Intergenic Intergenic 45397 ENSMUSG00000028005.13 ENSMUSG00000028005 ENSMUST00000193085 Gucy1b1 protein_coding Interval_120895 chr4 151401680 151401917 + 0 NA intron (ENSMUSG00000014592.21, intron 5 of 24) protein_coding-intron (ENSMUSG00000014592.21, intron 5 of 23) 25328 ENSMUSG00000085593.1 ENSMUSG00000085593 ENSMUST00000129097 4930589P08Rik antisense Interval_144644 chr7 27308847 27309571 + 0 NA intron (ENSMUSG00000040488.18, intron 3 of 4) protein_coding-intron (ENSMUSG00000040488.18, intron 28 of 32) 24439 ENSMUSG00000040488.18 ENSMUSG00000040488 ENSMUST00000206413 Ltbp4 protein_coding Interval_160249 chr8 107448361 107449958 + 0 NA intron (ENSMUSG00000031930.11, intron 1 of 7) protein_coding-intron (ENSMUSG00000031930.11, intron 1 of 23) -4467 ENSMUSG00000110501.1 ENSMUSG00000110501 ENSMUST00000211879 Gm45900 processed_pseudogene Interval_118789 chr4 133716367 133717392 + 0 NA TTS (ENSMUSG00000104566.1) miRNA-TTS (ENSMUSG00000104566.1) 229 ENSMUSG00000104566.1 ENSMUSG00000104566 ENSMUST00000200408 Mir7227 miRNA Interval_59879 chr15 60633177 60633500 + 0 NA Intergenic Intergenic -37005 ENSMUSG00000115504.1 ENSMUSG00000115504 ENSMUST00000226738 Gm48946 lincRNA Interval_26964 chr11 61897324 61898246 + 0 NA intron (ENSMUSG00000047804.15, intron 8 of 9) protein_coding-intron (ENSMUSG00000047804.15, intron 6 of 8) -29727 ENSMUSG00000072847.4 ENSMUSG00000072847 ENSMUST00000148413 A530017D24Rik lincRNA Interval_24727 chr11 36271888 36272117 + 0 NA intron (ENSMUSG00000049336.16, intron 5 of 28) protein_coding-intron (ENSMUSG00000049336.16, intron 5 of 28) -6039 ENSMUSG00000086375.1 ENSMUSG00000086375 ENSMUST00000123278 Gm12127 antisense Interval_52236 chr14 40926643 40926954 + 0 NA intron (ENSMUSG00000037824.6, intron 1 of 3) protein_coding-intron (ENSMUSG00000037824.6, intron 2 of 8) 7518 ENSMUSG00000037824.6 ENSMUSG00000037824 ENSMUST00000224349 Tspan14 protein_coding Interval_85155 chr19 23191374 23192170 + 0 NA Intergenic Intergenic 42341 ENSMUSG00000080626.1 ENSMUSG00000080626 ENSMUST00000116976 Mir1192 miRNA Interval_122576 chr5 23871069 23871666 + 0 NA intron (ENSMUSG00000118576.1, intron 3 of 3) unprocessed_pseudogene-intron (ENSMUSG00000118576.1, intron 3 of 3) 5076 ENSMUSG00000118576.1 ENSMUSG00000118576 ENSMUST00000239129 AC117663.1 unprocessed_pseudogene Interval_36165 chr12 37362588 37363308 + 0 NA intron (ENSMUSG00000050103.18, intron 5 of 12) protein_coding-intron (ENSMUSG00000050103.18, intron 5 of 12) -82237 ENSMUSG00000050103.18 ENSMUSG00000050103 ENSMUST00000221949 Agmo protein_coding Interval_11347 chr1 181120686 181121452 + 0 NA intron (ENSMUSG00000026516.8, intron 11 of 22) protein_coding-intron (ENSMUSG00000026516.8, intron 11 of 22) -23624 ENSMUSG00000062169.13 ENSMUSG00000062169 ENSMUST00000111057 Cnih4 protein_coding Interval_173451 chrX 93987913 93989095 + 0 NA exon (ENSMUSG00000080995.1, exon 1 of 1) processed_pseudogene-exon (ENSMUSG00000080995.1, exon 1 of 1) 315 ENSMUSG00000080995.1 ENSMUSG00000080995 ENSMUST00000118140 Gm15165 processed_pseudogene Interval_3856 chr1 63750443 63750689 + 0 NA promoter-TSS (ENSMUSG00000025962.15) protein_coding-promoter-TSS (ENSMUSG00000025962.15) 18701 ENSMUSG00000025961.1 ENSMUSG00000025961 ENSMUST00000027102 4933402D24Rik protein_coding Interval_51824 chr14 32519298 32519610 + 0 NA intron (ENSMUSG00000054051.7, intron 3 of 5) protein_coding-intron (ENSMUSG00000054051.7, intron 3 of 20) -33121 ENSMUSG00000054051.7 ENSMUSG00000054051 ENSMUST00000228549 Ercc6 protein_coding Interval_155479 chr8 33840969 33842447 + 0 NA intron (ENSMUSG00000031586.17, intron 4 of 5) protein_coding-intron (ENSMUSG00000031586.17, intron 4 of 7) 28505 ENSMUSG00000097442.1 ENSMUSG00000097442 ENSMUST00000181120 Gm26632 antisense Interval_36845 chr12 54630727 54630971 + 0 NA Intergenic Intergenic 8259 ENSMUSG00000112145.1 ENSMUSG00000112145 ENSMUST00000219812 Gm6218 processed_pseudogene Interval_124580 chr5 51730569 51730788 + 0 NA Intergenic Intergenic 128097 ENSMUSG00000105663.1 ENSMUSG00000105663 ENSMUST00000195938 Gm43606 TEC Interval_167764 chr9 72608988 72609632 + 0 NA intron (ENSMUSG00000037674.15, intron 5 of 8) protein_coding-intron (ENSMUSG00000037674.15, intron 5 of 8) -2113 ENSMUSG00000098275.1 ENSMUSG00000098275 ENSMUST00000183369 Gm18014 processed_pseudogene Interval_8190 chr1 136394456 136395438 + 0 NA Intergenic Intergenic 20547 ENSMUSG00000097403.2 ENSMUSG00000097403 ENSMUST00000194227 9230116N13Rik processed_transcript Interval_7424 chr1 131209742 131210185 + 0 NA intron (ENSMUSG00000026430.16, intron 2 of 2) protein_coding-intron (ENSMUSG00000026430.16, intron 2 of 5) -6914 ENSMUSG00000101729.1 ENSMUSG00000101729 ENSMUST00000189015 Gm17796 processed_pseudogene Interval_173609 chrX 100800266 100801058 + 0 NA intron (ENSMUSG00000000881.12, intron 2 of 11) protein_coding-intron (ENSMUSG00000000881.12, intron 10 of 18) 23377 ENSMUSG00000000881.12 ENSMUSG00000000881 ENSMUST00000146772 Dlg3 protein_coding Interval_43456 chr13 31332040 31332986 + 0 NA Intergenic Intergenic -1746 ENSMUSG00000087662.2 ENSMUSG00000087662 ENSMUST00000129791 Gm11373 lincRNA Interval_153994 chr8 11712140 11712513 + 0 NA promoter-TSS (ENSMUSG00000031510.5) lincRNA-promoter-TSS (ENSMUSG00000031510.5) -938 ENSMUSG00000031510.5 ENSMUSG00000031510 ENSMUST00000134409 1700128E19Rik lincRNA Interval_102790 chr3 31042271 31043458 + 0 NA intron (ENSMUSG00000037643.14, intron 13 of 17) protein_coding-intron (ENSMUSG00000037643.14, intron 13 of 17) 3898 ENSMUSG00000098890.1 ENSMUSG00000098890 ENSMUST00000184398 Mir7008 miRNA Interval_82168 chr18 68253801 68254342 + 0 NA exon (ENSMUSG00000024544.9, exon 6 of 6) protein_coding-exon (ENSMUSG00000024544.9, exon 6 of 6) 6902 ENSMUSG00000098253.1 ENSMUSG00000098253 ENSMUST00000184508 Mir7219 miRNA Interval_62966 chr15 98295584 98296781 + 0 NA promoter-TSS (ENSMUSG00000022987.12) protein_coding-promoter-TSS (ENSMUSG00000022987.12) -21 ENSMUSG00000022987.12 ENSMUSG00000022987 ENSMUST00000023722 Zfp641 protein_coding Interval_128717 chr5 114902515 114902869 + 0 NA exon (ENSMUSG00000029561.17, exon 1 of 1) protein_coding-intron (ENSMUSG00000029561.17, intron 2 of 4) 5160 ENSMUSG00000029561.17 ENSMUSG00000029561 ENSMUST00000129707 Oasl2 protein_coding Interval_143717 chr7 15899774 15900617 + 0 NA TTS (ENSMUSG00000074365.13) protein_coding-TTS (ENSMUSG00000074365.13) 2789 ENSMUSG00000074365.13 ENSMUSG00000074365 ENSMUST00000171280 Crxos protein_coding Interval_145106 chr7 30062163 30062943 + 0 NA intron (ENSMUSG00000098022.7, intron 4 of 5) protein_coding-intron (ENSMUSG00000098022.7, intron 5 of 6) 10266 ENSMUSG00000098022.7 ENSMUSG00000098022 ENSMUST00000183190 Zfp82 protein_coding Interval_147063 chr7 60415163 60415853 + 0 NA Intergenic Intergenic 122304 ENSMUSG00000109220.1 ENSMUSG00000109220 ENSMUST00000208957 Gm30196 processed_pseudogene Interval_162043 chr8 124677164 124679746 + 0 NA TTS (ENSMUSG00000037300.19) protein_coding-TTS (ENSMUSG00000037300.19) -15086 ENSMUSG00000031983.7 ENSMUSG00000031983 ENSMUST00000034464 2310022B05Rik protein_coding Interval_59196 chr15 47571017 47571549 + 0 NA Intergenic Intergenic 50945 ENSMUSG00000115707.1 ENSMUSG00000115707 ENSMUST00000227023 Gm2267 processed_pseudogene Interval_30332 chr11 93676195 93676780 + 0 NA Intergenic Intergenic -18595 ENSMUSG00000080872.1 ENSMUSG00000080872 ENSMUST00000122414 Gm11506 processed_pseudogene Interval_139793 chr6 108736048 108737050 + 0 NA Intergenic Intergenic -58348 ENSMUSG00000030105.8 ENSMUSG00000030105 ENSMUST00000204483 Arl8b protein_coding Interval_170695 chr9 110144861 110145541 + 0 NA intron (ENSMUSG00000032481.17, intron 3 of 24) protein_coding-intron (ENSMUSG00000032481.17, intron 3 of 27) -23385 ENSMUSG00000105187.1 ENSMUSG00000105187 ENSMUST00000196828 Gm23377 snoRNA Interval_78873 chr18 21076290 21077020 + 0 NA TTS (ENSMUSG00000062962.5) processed_pseudogene-TTS (ENSMUSG00000062962.5) 454 ENSMUSG00000062962.5 ENSMUSG00000062962 ENSMUST00000084199 Gm6378 processed_pseudogene Interval_156718 chr8 57574224 57574644 + 0 NA intron (ENSMUSG00000031608.13, intron 2 of 5) protein_coding-intron (ENSMUSG00000031608.13, intron 2 of 11) 24135 ENSMUSG00000070025.8 ENSMUSG00000070025 ENSMUST00000145057 Gm10284 processed_pseudogene Interval_157054 chr8 64824026 64824273 + 0 NA intron (ENSMUSG00000031605.8, intron 2 of 13) protein_coding-intron (ENSMUSG00000031605.8, intron 2 of 14) -14085 ENSMUSG00000109854.1 ENSMUSG00000109854 ENSMUST00000211427 Gm45345 antisense Interval_133041 chr5 149474282 149475388 + 0 NA Intergenic Intergenic 28217 ENSMUSG00000106879.1 ENSMUSG00000106879 ENSMUST00000201267 Gm2566 processed_pseudogene Interval_62636 chr15 95849561 95850460 + 0 NA intron (ENSMUSG00000064210.7, intron 2 of 20) protein_coding-intron (ENSMUSG00000064210.7, intron 1 of 19) -19938 ENSMUSG00000078648.3 ENSMUSG00000078648 ENSMUST00000168960 Gm17546 antisense Interval_84581 chr19 13139137 13139746 + 0 NA exon (ENSMUSG00000057503.6, exon 3 of 3) protein_coding-exon (ENSMUSG00000057503.6, exon 3 of 3) 10108 ENSMUSG00000057503.6 ENSMUSG00000057503 ENSMUST00000078299 Olfr1459 protein_coding Interval_91592 chr2 44224084 44224773 + 0 NA intron (ENSMUSG00000049744.15, intron 11 of 14) protein_coding-intron (ENSMUSG00000049744.15, intron 11 of 13) -159104 ENSMUSG00000085089.1 ENSMUSG00000085089 ENSMUST00000139948 Arhgap15os antisense Interval_32289 chr11 106706236 106707398 + 0 NA intron (ENSMUSG00000020717.19, intron 2 of 14) protein_coding-intron (ENSMUSG00000020717.19, intron 3 of 15) -43491 ENSMUSG00000020717.19 ENSMUSG00000020717 ENSMUST00000124958 Pecam1 protein_coding Interval_82299 chr18 70419473 70421223 + 0 NA Intergenic Intergenic 13508 ENSMUSG00000110495.1 ENSMUSG00000110495 ENSMUST00000212521 Gm45879 unitary_pseudogene Interval_77790 chr18 3514223 3514564 + 0 NA exon (ENSMUSG00000024232.2, exon 3 of 3) protein_coding-exon (ENSMUSG00000024232.2, exon 3 of 3) 6470 ENSMUSG00000024232.2 ENSMUSG00000024232 ENSMUST00000025075 Bambi protein_coding Interval_153021 chr7 140927171 140928714 + 0 NA TTS (ENSMUSG00000038745.15) protein_coding-TTS (ENSMUSG00000038745.15) 6871 ENSMUSG00000038745.15 ENSMUSG00000038745 ENSMUST00000183761 Nlrp6 protein_coding Interval_99897 chr2 165687491 165688031 + 0 NA intron (ENSMUSG00000017897.18, intron 6 of 7) protein_coding-intron (ENSMUSG00000017897.18, intron 5 of 15) -20904 ENSMUSG00000081758.1 ENSMUSG00000081758 ENSMUST00000118200 Gm11460 processed_pseudogene Interval_78816 chr18 20773675 20778155 + 0 NA Intergenic Intergenic -29511 ENSMUSG00000056124.5 ENSMUSG00000056124 ENSMUST00000070080 B4galt6 protein_coding Interval_171506 chr9 118920662 118921173 + 0 NA intron (ENSMUSG00000086119.2, intron 1 of 3) antisense-intron (ENSMUSG00000086119.2, intron 1 of 3) -3956 ENSMUSG00000087041.1 ENSMUSG00000087041 ENSMUST00000139512 Gm16295 lincRNA Interval_125914 chr5 75653060 75654208 + 0 NA TTS (ENSMUSG00000005672.12) protein_coding-TTS (ENSMUSG00000005672.12) 4540 ENSMUSG00000005672.12 ENSMUSG00000005672 ENSMUST00000201240 Kit protein_coding Interval_126698 chr5 92112256 92113737 + 0 NA Intergenic Intergenic 5287 ENSMUSG00000088949.1 ENSMUSG00000088949 ENSMUST00000158324 Gm24931 rRNA Interval_36474 chr12 45499859 45500067 + 0 NA intron (ENSMUSG00000112054.1, intron 4 of 4) lincRNA-intron (ENSMUSG00000112054.1, intron 4 of 4) 33667 ENSMUSG00000112054.1 ENSMUSG00000112054 ENSMUST00000219610 Gm33680 lincRNA Interval_39901 chr12 99510476 99511249 + 0 NA intron (ENSMUSG00000033713.12, intron 1 of 2) protein_coding-intron (ENSMUSG00000033713.12, intron 1 of 2) 52674 ENSMUSG00000033713.12 ENSMUSG00000033713 ENSMUST00000221283 Foxn3 protein_coding Interval_50537 chr14 14776662 14776973 + 0 NA intron (ENSMUSG00000021733.11, intron 19 of 23) protein_coding-intron (ENSMUSG00000021733.11, intron 19 of 24) -26598 ENSMUSG00000042567.20 ENSMUSG00000042567 ENSMUST00000136826 Nek10 protein_coding Interval_48702 chr13 101702237 101702621 + 0 NA promoter-TSS (ENSMUSG00000041417.15) protein_coding-promoter-TSS (ENSMUSG00000041417.15) -10086 ENSMUSG00000041417.15 ENSMUSG00000041417 ENSMUST00000189426 Pik3r1 protein_coding Interval_61189 chr15 79860049 79860287 + 0 NA Intergenic Intergenic -13701 ENSMUSG00000116283.1 ENSMUSG00000116283 ENSMUST00000229056 Gm49412 TEC Interval_70042 chr17 4948180 4948867 + 0 NA Intergenic Intergenic -1709 ENSMUSG00000116551.1 ENSMUSG00000116551 ENSMUST00000232522 Gm41517 lincRNA Interval_56248 chr14 114948505 114948807 + 0 NA Intergenic Intergenic 2657 ENSMUSG00000114979.1 ENSMUSG00000114979 ENSMUST00000227718 Gm31072 lincRNA Interval_152247 chr7 130913750 130915583 + 0 NA intron (ENSMUSG00000030849.18, intron 2 of 6) protein_coding-intron (ENSMUSG00000030849.18, intron 2 of 6) 6398 ENSMUSG00000104914.1 ENSMUSG00000104914 ENSMUST00000198082 Mir7061 miRNA Interval_26754 chr11 60230474 60231694 + 0 NA intron (ENSMUSG00000000538.18, intron 3 of 3) protein_coding-intron (ENSMUSG00000000538.18, intron 13 of 13) 8092 ENSMUSG00000000538.18 ENSMUSG00000000538 ENSMUST00000142225 Tom1l2 protein_coding Interval_59216 chr15 48816504 48816726 + 0 NA Intergenic Intergenic -24552 ENSMUSG00000022311.15 ENSMUSG00000022311 ENSMUST00000160655 Csmd3 protein_coding Interval_150856 chr7 115829933 115830705 + 0 NA intron (ENSMUSG00000051910.13, intron 2 of 11) protein_coding-intron (ENSMUSG00000051910.13, intron 2 of 16) 15832 ENSMUSG00000051910.13 ENSMUSG00000051910 ENSMUST00000206912 Sox6 protein_coding Interval_11039 chr1 178664111 178665421 + 0 NA intron (ENSMUSG00000026494.12, intron 2 of 3) protein_coding-intron (ENSMUSG00000026494.12, intron 2 of 14) 27861 ENSMUSG00000064967.1 ENSMUSG00000064967 ENSMUST00000083033 Gm24405 snRNA Interval_15564 chr10 51553068 51554027 + 0 NA Intergenic Intergenic -2100 ENSMUSG00000112645.1 ENSMUSG00000112645 ENSMUST00000219893 Gm48787 processed_pseudogene Interval_134980 chr6 34292666 34293492 + 0 NA intron (ENSMUSG00000086762.1, intron 1 of 1) antisense-intron (ENSMUSG00000086762.1, intron 1 of 1) 2814 ENSMUSG00000086762.1 ENSMUSG00000086762 ENSMUST00000138275 Gm14546 antisense Interval_75809 chr17 71542787 71543010 + 0 NA intron (ENSMUSG00000079356.10, intron 5 of 6) transcribed_unprocessed_pseudogene-intron (ENSMUSG00000079356.10, intron 5 of 6) -9163 ENSMUSG00000052525.14 ENSMUSG00000052525 ENSMUST00000144142 Spdya protein_coding Interval_115401 chr4 98668533 98668816 + 0 NA intron (ENSMUSG00000061859.17, intron 35 of 44) protein_coding-intron (ENSMUSG00000061859.17, intron 9 of 15) 4308 ENSMUSG00000081046.1 ENSMUSG00000081046 ENSMUST00000120431 Gm12846 processed_pseudogene Interval_91282 chr2 37380104 37380786 + 0 NA exon (ENSMUSG00000075376.10, exon 1 of 2) protein_coding-exon (ENSMUSG00000075376.10, exon 1 of 2) 9752 ENSMUSG00000075376.10 ENSMUSG00000075376 ENSMUST00000204690 Rc3h2 protein_coding Interval_74684 chr17 55950620 55951270 + 0 NA Intergenic Intergenic -1445 ENSMUSG00000062101.12 ENSMUSG00000062101 ENSMUST00000189452 Zfp119b protein_coding Interval_30220 chr11 90891834 90892921 + 0 NA intron (ENSMUSG00000085940.1, intron 2 of 2) lincRNA-intron (ENSMUSG00000085940.1, intron 2 of 2) -31029 ENSMUSG00000083764.1 ENSMUSG00000083764 ENSMUST00000118450 Gm11516 processed_pseudogene Interval_31505 chr11 101069756 101070630 + 0 NA exon (ENSMUSG00000001751.9, exon 1 of 6) protein_coding-exon (ENSMUSG00000001751.9, exon 1 of 6) -1359 ENSMUSG00000001751.9 ENSMUSG00000001751 ENSMUST00000138409 Naglu protein_coding Interval_151006 chr7 117589608 117590035 + 0 NA intron (ENSMUSG00000030657.11, intron 3 of 6) protein_coding-intron (ENSMUSG00000030657.11, intron 3 of 11) 114329 ENSMUSG00000030657.11 ENSMUSG00000030657 ENSMUST00000161889 Xylt1 protein_coding Interval_99005 chr2 156596427 156596782 + 0 NA Intergenic Intergenic 16818 ENSMUSG00000086118.1 ENSMUSG00000086118 ENSMUST00000124676 Gm14169 processed_transcript Interval_131978 chr5 141728131 141728414 + 0 NA intron (ENSMUSG00000039683.16, intron 4 of 9) protein_coding-intron (ENSMUSG00000039683.16, intron 4 of 44) -112270 ENSMUSG00000085540.1 ENSMUSG00000085540 ENSMUST00000150385 Gm16036 antisense Interval_147037 chr7 59058398 59058982 + 0 NA Intergenic Intergenic -50449 ENSMUSG00000108838.1 ENSMUSG00000108838 ENSMUST00000208567 Gm45189 processed_pseudogene Interval_101599 chr3 7520480 7520868 + 0 NA intron (ENSMUSG00000043542.12, intron 3 of 7) protein_coding-intron (ENSMUSG00000043542.12, intron 3 of 8) 17188 ENSMUSG00000043542.12 ENSMUSG00000043542 ENSMUST00000192835 Zc2hc1a protein_coding Interval_55707 chr14 99175951 99177545 + 0 NA intron (ENSMUSG00000022064.10, intron 1 of 7) protein_coding-intron (ENSMUSG00000022064.10, intron 10 of 17) 65071 ENSMUSG00000115071.1 ENSMUSG00000115071 ENSMUST00000226897 Gm49026 TEC Interval_38803 chr12 82469295 82471110 + 0 NA Intergenic Intergenic 26335 ENSMUSG00000094374.2 ENSMUSG00000094374 ENSMUST00000179295 Gm5435 processed_pseudogene Interval_117004 chr4 118930705 118932242 + 0 NA exon (ENSMUSG00000111259.2, exon 2 of 2) protein_coding-exon (ENSMUSG00000111259.2, exon 2 of 2) 7139 ENSMUSG00000111259.2 ENSMUSG00000111259 ENSMUST00000081960 Olfr1328 protein_coding Interval_14994 chr10 41763531 41764683 + 0 NA intron (ENSMUSG00000102114.2, intron 1 of 3) protein_coding-intron (ENSMUSG00000019813.16, intron 1 of 10) 17386 ENSMUSG00000102114.2 ENSMUSG00000102114 ENSMUST00000190793 BC048559 antisense Interval_164229 chr9 33126598 33127030 + 0 NA Intergenic Intergenic -24478 ENSMUSG00000111645.1 ENSMUSG00000111645 ENSMUST00000217419 Gm32171 lincRNA Interval_137779 chr6 82383056 82384185 + 0 NA Intergenic Intergenic -18714 ENSMUSG00000030043.11 ENSMUSG00000030043 ENSMUST00000203775 Tacr1 protein_coding Interval_110477 chr3 159214177 159214451 + 0 NA intron (ENSMUSG00000106053.1, intron 3 of 4) lincRNA-intron (ENSMUSG00000106053.1, intron 3 of 4) 137950 ENSMUSG00000106053.1 ENSMUSG00000106053 ENSMUST00000197341 Gm20752 lincRNA Interval_62163 chr15 88411523 88412048 + 0 NA Intergenic Intergenic -96153 ENSMUSG00000115880.1 ENSMUSG00000115880 ENSMUST00000230151 4930445N06Rik lincRNA Interval_2838 chr1 46176677 46177314 + 0 NA exon (ENSMUSG00000041144.12, exon 2 of 2) protein_coding-exon (ENSMUSG00000041144.12, exon 2 of 2) 110142 ENSMUSG00000041144.12 ENSMUSG00000041144 ENSMUST00000185879 Dnah7b protein_coding Interval_106799 chr3 100941622 100942069 + 0 NA TTS (ENSMUSG00000033222.16) protein_coding-TTS (ENSMUSG00000033222.16) -13596 ENSMUSG00000082000.1 ENSMUSG00000082000 ENSMUST00000122449 Gm12488 processed_pseudogene Interval_25140 chr11 44502575 44503493 + 0 NA Intergenic Intergenic 23827 ENSMUSG00000082750.1 ENSMUSG00000082750 ENSMUST00000119188 Gm12156 processed_pseudogene Interval_128389 chr5 113075866 113076225 + 0 NA TTS (ENSMUSG00000029352.14) protein_coding-TTS (ENSMUSG00000029352.14) 4346 ENSMUSG00000029352.14 ENSMUSG00000029352 ENSMUST00000136352 Crybb3 protein_coding Interval_99984 chr2 166237599 166238432 + 0 NA Intergenic Intergenic -29388 ENSMUSG00000085046.1 ENSMUSG00000085046 ENSMUST00000129407 Gm11467 lincRNA Interval_1986 chr1 35609856 35610100 + 0 NA Intergenic Intergenic 41319 ENSMUSG00000104417.1 ENSMUSG00000104417 ENSMUST00000195168 Gm37068 lincRNA Interval_173078 chrX 70712559 70713595 + 0 NA Intergenic Intergenic 19601 ENSMUSG00000077275.1 ENSMUSG00000077275 ENSMUST00000104087 Gm22785 snoRNA Interval_113756 chr4 58373403 58373604 + 0 NA exon (ENSMUSG00000057280.15, exon 14 of 14) protein_coding-exon (ENSMUSG00000057280.15, exon 14 of 14) 67595 ENSMUSG00000093293.1 ENSMUSG00000093293 ENSMUST00000175552 Mir3095 miRNA Interval_38280 chr12 76879414 76879766 + 0 NA intron (ENSMUSG00000033373.16, intron 6 of 13) protein_coding-intron (ENSMUSG00000033373.16, intron 4 of 11) -7468 ENSMUSG00000033373.16 ENSMUSG00000033373 ENSMUST00000130605 Fntb protein_coding Interval_10516 chr1 171429577 171430068 + 0 NA Intergenic Intergenic 10103 ENSMUSG00000103711.1 ENSMUSG00000103711 ENSMUST00000194029 Tstd1 protein_coding Interval_128404 chr5 113137259 113139155 + 0 NA promoter-TSS (ENSMUSG00000051339.10) protein_coding-promoter-TSS (ENSMUSG00000051339.10) -221 ENSMUSG00000051339.10 ENSMUSG00000051339 ENSMUST00000211733 2900026A02Rik protein_coding Interval_169345 chr9 96543819 96544474 + 0 NA intron (ENSMUSG00000032413.12, intron 1 of 1) protein_coding-intron (ENSMUSG00000032413.12, intron 23 of 23) 5563 ENSMUSG00000084701.1 ENSMUSG00000084701 ENSMUST00000122752 n-R5s87 rRNA Interval_124173 chr5 38891892 38892915 + 0 NA Intergenic Intergenic -15591 ENSMUSG00000039315.15 ENSMUSG00000039315 ENSMUST00000171633 Clnk protein_coding Interval_103464 chr3 41802212 41803108 + 0 NA intron (ENSMUSG00000025766.14, intron 7 of 7) protein_coding-intron (ENSMUSG00000025766.14, intron 7 of 7) 29479 ENSMUSG00000103952.1 ENSMUSG00000103952 ENSMUST00000192254 Gm37268 TEC Interval_102701 chr3 30392045 30392424 + 0 NA intron (ENSMUSG00000027684.16, intron 2 of 8) protein_coding-intron (ENSMUSG00000027684.16, intron 1 of 11) -96192 ENSMUSG00000104079.1 ENSMUSG00000104079 ENSMUST00000192224 Gm37024 TEC Interval_32426 chr11 107478796 107479947 + 0 NA promoter-TSS (ENSMUSG00000020720.13) protein_coding-promoter-TSS (ENSMUSG00000020720.13) -157 ENSMUSG00000020720.13 ENSMUSG00000020720 ENSMUST00000106750 Psmd12 protein_coding Interval_50979 chr14 21463014 21463343 + 0 NA intron (ENSMUSG00000114875.1, intron 1 of 2) processed_transcript-intron (ENSMUSG00000114875.1, intron 1 of 2) 10182 ENSMUSG00000114875.1 ENSMUSG00000114875 ENSMUST00000225719 Gm30363 processed_transcript Interval_72201 chr17 28552930 28554620 + 0 NA Intergenic Intergenic 4364 ENSMUSG00000024224.5 ENSMUSG00000024224 ENSMUST00000025061 Clpsl2 protein_coding Interval_68871 chr16 87720919 87721412 + 0 NA intron (ENSMUSG00000025612.5, intron 3 of 3) protein_coding-intron (ENSMUSG00000025612.5, intron 3 of 4) 22161 ENSMUSG00000025612.5 ENSMUSG00000025612 ENSMUST00000156958 Bach1 protein_coding Interval_30804 chr11 96578600 96579202 + 0 NA intron (ENSMUSG00000057058.16, intron 4 of 7) protein_coding-intron (ENSMUSG00000057058.16, intron 4 of 11) 95119 ENSMUSG00000057058.16 ENSMUSG00000057058 ENSMUST00000123814 Skap1 protein_coding Interval_56211 chr14 112971270 112971480 + 0 NA Intergenic Intergenic 14007 ENSMUSG00000115786.1 ENSMUSG00000115786 ENSMUST00000227924 Gm4486 processed_pseudogene Interval_4110 chr1 68624358 68625614 + 0 NA intron (ENSMUSG00000062209.15, intron 2 of 18) protein_coding-intron (ENSMUSG00000062209.15, intron 2 of 27) 15843 ENSMUSG00000104508.1 ENSMUSG00000104508 ENSMUST00000193995 Gm37735 TEC Interval_98994 chr2 156523052 156523526 + 0 NA intron (ENSMUSG00000027624.20, intron 16 of 24) protein_coding-intron (ENSMUSG00000027624.20, intron 14 of 21) 16895 ENSMUSG00000027624.20 ENSMUSG00000027624 ENSMUST00000137067 Epb41l1 protein_coding Interval_52716 chr14 48949156 48949485 + 0 NA Intergenic Intergenic 52516 ENSMUSG00000087754.1 ENSMUSG00000087754 ENSMUST00000157129 Gm23470 snRNA Interval_2756 chr1 44220893 44221098 + 0 NA Intergenic Intergenic -2082 ENSMUSG00000046828.3 ENSMUSG00000046828 ENSMUST00000150062 Mettl21e protein_coding Interval_21113 chr10 126598692 126600645 + 0 NA Intergenic Intergenic -12864 ENSMUSG00000112435.1 ENSMUSG00000112435 ENSMUST00000220216 Gm47965 processed_pseudogene Interval_35578 chr12 24993494 24993884 + 0 NA intron (ENSMUSG00000036333.11, intron 7 of 29) protein_coding-intron (ENSMUSG00000036333.11, intron 7 of 31) -18135 ENSMUSG00000113774.1 ENSMUSG00000113774 ENSMUST00000220780 Gm36236 bidirectional_promoter_lncRNA Interval_162428 chr8 128652554 128652861 + 0 NA Intergenic Intergenic -1606 ENSMUSG00000110654.1 ENSMUSG00000110654 ENSMUST00000212623 Gm45746 TEC Interval_89721 chr2 24987623 24988493 + 0 NA TTS (ENSMUSG00000036833.16) protein_coding-TTS (ENSMUSG00000036833.16) 2074 ENSMUSG00000084383.1 ENSMUSG00000084383 ENSMUST00000121309 Gm13370 processed_pseudogene Interval_48627 chr13 100724191 100725529 + 0 NA intron (ENSMUSG00000069089.8, intron 2 of 10) protein_coding-intron (ENSMUSG00000069089.8, intron 2 of 11) 6040 ENSMUSG00000069089.8 ENSMUSG00000069089 ENSMUST00000225578 Cdk7 protein_coding Interval_163518 chr9 21823875 21825300 + 0 NA intron (ENSMUSG00000032198.9, intron 23 of 23) protein_coding-intron (ENSMUSG00000032198.9, intron 24 of 48) -10923 ENSMUSG00000047822.8 ENSMUSG00000047822 ENSMUST00000058777 Angptl8 protein_coding Interval_6468 chr1 110774197 110775525 + 0 NA Intergenic Intergenic 174840 ENSMUSG00000099926.1 ENSMUSG00000099926 ENSMUST00000189583 Gm6693 processed_pseudogene Interval_103396 chr3 41194327 41195827 + 0 NA Intergenic Intergenic -22414 ENSMUSG00000105258.1 ENSMUSG00000105258 ENSMUST00000197878 Gm40038 lincRNA Interval_172274 chrX 12157592 12160491 + 0 NA intron (ENSMUSG00000040363.15, intron 1 of 4) protein_coding-intron (ENSMUSG00000040363.15, intron 1 of 13) 1305 ENSMUSG00000040363.15 ENSMUSG00000040363 ENSMUST00000209776 Bcor protein_coding Interval_87172 chr19 46593017 46593497 + 0 NA intron (ENSMUSG00000025036.7, intron 9 of 9) protein_coding-intron (ENSMUSG00000025036.7, intron 11 of 11) -5867 ENSMUSG00000047731.17 ENSMUSG00000047731 ENSMUST00000111855 Wbp1l protein_coding Interval_69665 chr16 95074597 95075364 + 0 NA Intergenic Intergenic -27424 ENSMUSG00000116667.1 ENSMUSG00000116667 ENSMUST00000232306 Gm49641 processed_pseudogene Interval_102448 chr3 26639481 26639751 + 0 NA intron (ENSMUSG00000039335.11, intron 1 of 9) protein_coding-intron (ENSMUSG00000039335.11, intron 1 of 10) 1966 ENSMUSG00000039335.11 ENSMUSG00000039335 ENSMUST00000108305 Spata16 protein_coding Interval_63878 chr16 4184888 4185506 + 0 NA intron (ENSMUSG00000022521.10, intron 1 of 29) protein_coding-intron (ENSMUSG00000022521.10, intron 1 of 30) -11561 ENSMUSG00000103937.1 ENSMUSG00000103937 ENSMUST00000195629 Gm37186 TEC Interval_87710 chr19 55315480 55317051 + 0 NA promoter-TSS (ENSMUSG00000024982.10) protein_coding-promoter-TSS (ENSMUSG00000024982.10) -62 ENSMUSG00000024983.10 ENSMUSG00000024983 ENSMUST00000224396 Vti1a protein_coding Interval_158033 chr8 78156507 78157628 + 0 NA Intergenic Intergenic 40782 ENSMUSG00000110328.1 ENSMUSG00000110328 ENSMUST00000210921 Gm45574 processed_pseudogene Interval_95471 chr2 109903940 109904576 + 0 NA intron (ENSMUSG00000063751.6, intron 4 of 4) processed_transcript-intron (ENSMUSG00000063751.6, intron 4 of 4) 9061 ENSMUSG00000063751.6 ENSMUSG00000063751 ENSMUST00000146110 Platr8 processed_transcript Interval_126115 chr5 77577633 77577827 + 0 NA Intergenic Intergenic -65982 ENSMUSG00000047652.4 ENSMUSG00000047652 ENSMUST00000183185 Pea15b transcribed_processed_pseudogene Interval_1624 chr1 30330187 30330387 + 0 NA Intergenic Intergenic 3110 ENSMUSG00000098883.1 ENSMUSG00000098883 ENSMUST00000184585 Gm27430 miRNA Interval_19944 chr10 111432463 111434255 + 0 NA Intergenic Intergenic -39868 ENSMUSG00000058799.16 ENSMUSG00000058799 ENSMUST00000219718 Nap1l1 protein_coding Interval_133206 chr5 150550996 150551385 + 0 NA TTS (ENSMUSG00000088482.1) snRNA-TTS (ENSMUSG00000088482.1) 617 ENSMUSG00000088482.1 ENSMUSG00000088482 ENSMUST00000157857 Gm23641 snRNA Interval_45211 chr13 53211698 53212804 + 0 NA intron (ENSMUSG00000021464.14, intron 1 of 8) protein_coding-intron (ENSMUSG00000021464.14, intron 1 of 8) 63407 ENSMUSG00000021464.14 ENSMUSG00000021464 ENSMUST00000149299 Ror2 protein_coding Interval_81194 chr18 56278722 56279273 + 0 NA Intergenic Intergenic -5855 ENSMUSG00000118137.1 ENSMUSG00000118137 ENSMUST00000236344 Gm50385 processed_pseudogene Interval_114471 chr4 80287506 80287726 + 0 NA Intergenic Intergenic -152782 ENSMUSG00000082555.1 ENSMUSG00000082555 ENSMUST00000117418 Gm11406 processed_pseudogene Interval_121635 chr5 4093586 4093818 + 0 NA intron (ENSMUSG00000001467.5, intron 2 of 5) protein_coding-intron (ENSMUSG00000001467.5, intron 5 of 9) 10719 ENSMUSG00000001467.5 ENSMUSG00000001467 ENSMUST00000199909 Cyp51 protein_coding Interval_116324 chr4 109820313 109821030 + 0 NA intron (ENSMUSG00000010517.7, intron 8 of 18) protein_coding-intron (ENSMUSG00000010517.7, intron 8 of 18) -20114 ENSMUSG00000010517.7 ENSMUSG00000010517 ENSMUST00000155204 Faf1 protein_coding Interval_127338 chr5 103181752 103182212 + 0 NA intron (ENSMUSG00000046709.18, intron 2 of 2) protein_coding-intron (ENSMUSG00000046709.18, intron 2 of 13) 29352 ENSMUSG00000046709.18 ENSMUSG00000046709 ENSMUST00000136595 Mapk10 protein_coding Interval_137921 chr6 83370299 83370755 + 0 NA exon (ENSMUSG00000034832.15, exon 10 of 11) protein_coding-exon (ENSMUSG00000034832.15, exon 10 of 11) 19487 ENSMUSG00000045160.14 ENSMUSG00000045160 ENSMUST00000148875 Bola3 protein_coding Interval_29079 chr11 80195374 80195563 + 0 NA intron (ENSMUSG00000020707.6, intron 3 of 4) protein_coding-intron (ENSMUSG00000020707.6, intron 3 of 4) 11245 ENSMUSG00000020707.6 ENSMUSG00000020707 ENSMUST00000134909 Rnf135 protein_coding Interval_40026 chr12 100551553 100552510 + 0 NA intron (ENSMUSG00000021180.9, intron 16 of 16) protein_coding-intron (ENSMUSG00000021180.9, intron 17 of 17) 21945 ENSMUSG00000113687.1 ENSMUSG00000113687 ENSMUST00000223531 Gm49703 TEC Interval_29269 chr11 82487559 82488283 + 0 NA Intergenic Intergenic 49664 ENSMUSG00000020701.12 ENSMUSG00000020701 ENSMUST00000202598 Tmem132e protein_coding Interval_35286 chr12 19851435 19851647 + 0 NA Intergenic Intergenic 13954 ENSMUSG00000113411.1 ENSMUSG00000113411 ENSMUST00000223086 Gm48643 processed_pseudogene Interval_129481 chr5 120475932 120476478 + 0 NA promoter-TSS (ENSMUSG00000029597.14) protein_coding-promoter-TSS (ENSMUSG00000029597.14) -321 ENSMUSG00000029597.14 ENSMUSG00000029597 ENSMUST00000124978 Sds protein_coding Interval_41036 chr12 110737152 110738805 + 0 NA promoter-TSS (ENSMUSG00000037957.14) protein_coding-promoter-TSS (ENSMUSG00000037957.14) -231 ENSMUSG00000037957.14 ENSMUSG00000037957 ENSMUST00000194118 Wdr20 protein_coding Interval_148604 chr7 83089225 83089848 + 0 NA intron (ENSMUSG00000053528.6, intron 1 of 3) lincRNA-intron (ENSMUSG00000053528.6, intron 1 of 3) 5155 ENSMUSG00000053528.6 ENSMUSG00000053528 ENSMUST00000208111 A530021J07Rik lincRNA Interval_105703 chr3 88652067 88653401 + 0 NA exon (ENSMUSG00000049741.4, exon 1 of 1) protein_coding-exon (ENSMUSG00000049741.4, exon 1 of 1) 408 ENSMUSG00000049741.4 ENSMUSG00000049741 ENSMUST00000063119 Rxfp4 protein_coding Interval_63093 chr15 99029306 99030910 + 0 NA promoter-TSS (ENSMUSG00000043091.9) protein_coding-promoter-TSS (ENSMUSG00000043091.9) -213 ENSMUSG00000043091.9 ENSMUSG00000043091 ENSMUST00000230447 Tuba1c protein_coding Interval_37041 chr12 56717939 56718797 + 0 NA intron (ENSMUSG00000035472.14, intron 8 of 10) protein_coding-intron (ENSMUSG00000035472.14, intron 7 of 9) -25404 ENSMUSG00000089894.2 ENSMUSG00000089894 ENSMUST00000159874 Gm15524 antisense Interval_126813 chr5 93126133 93128155 + 0 NA intron (ENSMUSG00000058013.11, intron 1 of 9) protein_coding-intron (ENSMUSG00000058013.11, intron 1 of 9) 33608 ENSMUSG00000058013.11 ENSMUSG00000058013 ENSMUST00000201695 Septin11 protein_coding Interval_46431 chr13 65204990 65207150 + 0 NA promoter-TSS (ENSMUSG00000032999.10) protein_coding-promoter-TSS (ENSMUSG00000032999.10) -127 ENSMUSG00000032999.10 ENSMUSG00000032999 ENSMUST00000222273 Nlrp4f protein_coding Interval_100067 chr2 166899342 166900015 + 0 NA Intergenic Intergenic -6362 ENSMUSG00000002718.14 ENSMUSG00000002718 ENSMUST00000129061 Cse1l protein_coding Interval_75180 chr17 64441969 64442322 + 0 NA Intergenic Intergenic 1339 ENSMUSG00000098984.1 ENSMUSG00000098984 ENSMUST00000185032 Mir6420 miRNA Interval_9239 chr1 155403501 155403777 + 0 NA intron (ENSMUSG00000026469.14, intron 1 of 6) protein_coding-intron (ENSMUSG00000026469.14, intron 1 of 14) 87673 ENSMUSG00000093286.1 ENSMUSG00000093286 ENSMUST00000175545 Gm22569 miRNA Interval_117690 chr4 125572012 125573108 + 0 NA intron (ENSMUSG00000001985.9, intron 1 of 15) protein_coding-intron (ENSMUSG00000001985.9, intron 1 of 15) 67811 ENSMUSG00000094403.1 ENSMUSG00000094403 ENSMUST00000102081 Mir692-2 miRNA Interval_26795 chr11 60526380 60527406 + 0 NA intron (ENSMUSG00000042678.17, intron 64 of 64) protein_coding-intron (ENSMUSG00000042678.17, intron 65 of 65) -9488 ENSMUSG00000042650.3 ENSMUSG00000042650 ENSMUST00000044250 Alkbh5 protein_coding Interval_29344 chr11 83348360 83349778 + 0 NA intron (ENSMUSG00000035152.14, intron 12 of 20) protein_coding-intron (ENSMUSG00000035152.14, intron 13 of 21) 17932 ENSMUSG00000077217.1 ENSMUSG00000077217 ENSMUST00000104029 Gm23951 snoRNA Interval_13813 chr10 22816190 22816578 + 0 NA TTS (ENSMUSG00000045680.8) protein_coding-TTS (ENSMUSG00000045680.8) 635 ENSMUSG00000112397.1 ENSMUSG00000112397 ENSMUST00000220000 Gm10824 antisense Interval_172652 chrX 40324283 40324698 + 0 NA intron (ENSMUSG00000086157.1, intron 2 of 7) processed_transcript-intron (ENSMUSG00000086157.1, intron 2 of 7) -186934 ENSMUSG00000080996.3 ENSMUSG00000080996 ENSMUST00000119731 Gm4986 processed_pseudogene Interval_12597 chr10 3801444 3801775 + 0 NA intron (ENSMUSG00000040624.18, intron 1 of 7) protein_coding-intron (ENSMUSG00000040624.18, intron 1 of 16) -33270 ENSMUSG00000040624.18 ENSMUSG00000040624 ENSMUST00000141367 Plekhg1 protein_coding Interval_18967 chr10 93452815 93454022 + 0 NA promoter-TSS (ENSMUSG00000015889.8) protein_coding-promoter-TSS (ENSMUSG00000015889.8) 20311 ENSMUSG00000098679.1 ENSMUSG00000098679 ENSMUST00000183565 Mir7688 miRNA Interval_148715 chr7 84521332 84521553 + 0 NA Intergenic Intergenic -7696 ENSMUSG00000097789.2 ENSMUSG00000097789 ENSMUST00000208409 Gm2115 protein_coding Interval_118633 chr4 132902915 132903462 + 0 NA intron (ENSMUSG00000028878.11, intron 6 of 7) protein_coding-intron (ENSMUSG00000028878.11, intron 7 of 8) 17721 ENSMUSG00000028878.11 ENSMUSG00000028878 ENSMUST00000148667 Fam76a protein_coding Interval_48333 chr13 98262564 98263700 + 0 NA promoter-TSS (ENSMUSG00000021661.16) protein_coding-promoter-TSS (ENSMUSG00000021661.16) -7 ENSMUSG00000021661.16 ENSMUSG00000021661 ENSMUST00000155629 Ankra2 protein_coding Interval_15686 chr10 53528127 53528647 + 0 NA Intergenic Intergenic 1798 ENSMUSG00000112440.1 ENSMUSG00000112440 ENSMUST00000220223 Gm47722 processed_pseudogene Interval_39855 chr12 99118582 99118881 + 0 NA Intergenic Intergenic 44077 ENSMUSG00000113210.1 ENSMUSG00000113210 ENSMUST00000223511 4930474N09Rik lincRNA Interval_161309 chr8 119656879 119657324 + 0 NA Intergenic Intergenic -9264 ENSMUSG00000023336.6 ENSMUSG00000023336 ENSMUST00000024107 Wfdc1 protein_coding Interval_102190 chr3 19303697 19304739 + 0 NA intron (ENSMUSG00000069094.12, intron 1 of 8) protein_coding-intron (ENSMUSG00000069094.12, intron 1 of 12) 6834 ENSMUSG00000069094.12 ENSMUSG00000069094 ENSMUST00000143120 Pde7a protein_coding Interval_114811 chr4 85515898 85516432 + 0 NA intron (ENSMUSG00000066113.16, intron 1 of 3) protein_coding-intron (ENSMUSG00000028488.15, intron 7 of 7) 1993 ENSMUSG00000066113.16 ENSMUSG00000066113 ENSMUST00000107177 Adamtsl1 protein_coding Interval_105160 chr3 82999239 82999455 + 0 NA intron (ENSMUSG00000102595.1, intron 1 of 3) lincRNA-intron (ENSMUSG00000102595.1, intron 1 of 3) -3762 ENSMUSG00000102595.1 ENSMUSG00000102595 ENSMUST00000194580 Gm30097 lincRNA Interval_139733 chr6 108231941 108232625 + 0 NA intron (ENSMUSG00000030102.11, intron 2 of 61) protein_coding-intron (ENSMUSG00000030102.11, intron 2 of 61) -46727 ENSMUSG00000030101.15 ENSMUSG00000030101 ENSMUST00000171697 Sumf1 protein_coding Interval_20845 chr10 121475682 121477059 + 0 NA promoter-TSS (ENSMUSG00000025795.8) protein_coding-promoter-TSS (ENSMUSG00000025795.8) -12616 ENSMUSG00000112539.1 ENSMUSG00000112539 ENSMUST00000218056 Gm40787 lincRNA Interval_28414 chr11 75720756 75721460 + 0 NA Intergenic Intergenic -30496 ENSMUSG00000020849.13 ENSMUSG00000020849 ENSMUST00000155057 Ywhae protein_coding Interval_50171 chr14 8531067 8531311 + 0 NA intron (ENSMUSG00000021747.12, intron 7 of 12) protein_coding-intron (ENSMUSG00000021747.12, intron 7 of 15) 122272 ENSMUSG00000114533.1 ENSMUSG00000114533 ENSMUST00000224382 Gm8416 processed_pseudogene Interval_151348 chr7 121366567 121367466 + 0 NA intron (ENSMUSG00000108351.1, intron 1 of 2) antisense-intron (ENSMUSG00000108351.1, intron 1 of 2) -24843 ENSMUSG00000046321.8 ENSMUSG00000046321 ENSMUST00000084628 Hs3st2 protein_coding Interval_119912 chr4 140867657 140869064 + 0 NA Intergenic Intergenic -4333 ENSMUSG00000087045.1 ENSMUSG00000087045 ENSMUST00000140588 4930515B02Rik lincRNA Interval_142177 chr6 137815024 137815310 + 0 NA intron (ENSMUSG00000030225.11, intron 6 of 7) protein_coding-intron (ENSMUSG00000030225.11, intron 6 of 8) -20390 ENSMUSG00000030225.11 ENSMUSG00000030225 ENSMUST00000204723 Dera protein_coding Interval_37148 chr12 58975090 58975727 + 0 NA intron (ENSMUSG00000020986.13, intron 2 of 3) protein_coding-intron (ENSMUSG00000020986.13, intron 14 of 19) 7296 ENSMUSG00000020986.13 ENSMUSG00000020986 ENSMUST00000134223 Sec23a protein_coding Interval_60155 chr15 66641463 66641659 + 0 NA intron (ENSMUSG00000072501.5, intron 19 of 19) protein_coding-intron (ENSMUSG00000072501.5, intron 20 of 20) 10673 ENSMUSG00000072501.5 ENSMUSG00000072501 ENSMUST00000231177 Phf20l1 protein_coding Interval_78454 chr18 12941185 12942322 + 0 NA promoter-TSS (ENSMUSG00000044252.18) protein_coding-promoter-TSS (ENSMUSG00000044252.18) -14106 ENSMUSG00000024423.6 ENSMUSG00000024423 ENSMUST00000234793 Impact protein_coding Interval_12343 chr1 192297971 192298225 + 0 NA intron (ENSMUSG00000058248.12, intron 6 of 10) protein_coding-intron (ENSMUSG00000058248.12, intron 6 of 10) -136642 ENSMUSG00000058248.12 ENSMUSG00000058248 ENSMUST00000151152 Kcnh1 protein_coding Interval_149442 chr7 98561670 98562167 + 0 NA intron (ENSMUSG00000055446.5, intron 1 of 1) lincRNA-intron (ENSMUSG00000055446.5, intron 1 of 1) 1072 ENSMUSG00000055446.5 ENSMUSG00000055446 ENSMUST00000069035 A630091E08Rik lincRNA Interval_8534 chr1 140923520 140924505 + 0 NA Intergenic Intergenic 100685 ENSMUSG00000102500.1 ENSMUSG00000102500 ENSMUST00000194837 Gm37371 TEC Interval_59977 chr15 62501161 62501747 + 0 NA Intergenic Intergenic -66521 ENSMUSG00000115862.1 ENSMUSG00000115862 ENSMUST00000230029 Gm41333 lincRNA Interval_56352 chr14 117986659 117987455 + 0 NA Intergenic Intergenic -33210 ENSMUSG00000098648.1 ENSMUSG00000098648 ENSMUST00000183564 Mir6239 miRNA Interval_23301 chr11 21262073 21262689 + 0 NA intron (ENSMUSG00000020128.15, intron 1 of 22) protein_coding-intron (ENSMUSG00000020128.15, intron 1 of 22) -12821 ENSMUSG00000089155.1 ENSMUSG00000089155 ENSMUST00000158530 Gm23582 snoRNA Interval_35198 chr12 18014026 18014293 + 0 NA TTS (ENSMUSG00000114040.1) unprocessed_pseudogene-TTS (ENSMUSG00000114040.1) 547 ENSMUSG00000114040.1 ENSMUSG00000114040 ENSMUST00000223372 Gm48319 unprocessed_pseudogene Interval_65708 chr16 25794297 25794515 + 0 NA intron (ENSMUSG00000022510.14, intron 3 of 13) protein_coding-intron (ENSMUSG00000022510.14, intron 3 of 12) 67710 ENSMUSG00000098103.1 ENSMUSG00000098103 ENSMUST00000182783 Gm27005 processed_pseudogene Interval_86137 chr19 36975151 36975888 + 0 NA intron (ENSMUSG00000040565.8, intron 8 of 15) protein_coding-intron (ENSMUSG00000040565.8, intron 14 of 37) 15334 ENSMUSG00000040565.8 ENSMUSG00000040565 ENSMUST00000236343 Btaf1 protein_coding Interval_96768 chr2 127986488 127987413 + 0 NA intron (ENSMUSG00000027380.10, intron 4 of 10) protein_coding-intron (ENSMUSG00000027380.10, intron 11 of 17) 94962 ENSMUSG00000093203.1 ENSMUSG00000093203 ENSMUST00000175462 Gm22411 miRNA Interval_135882 chr6 48228294 48229477 + 0 NA Intergenic Intergenic -60343 ENSMUSG00000092888.1 ENSMUSG00000092888 ENSMUST00000175147 Gm22122 snRNA Interval_95746 chr2 115693741 115694280 + 0 NA intron (ENSMUSG00000040282.13, intron 10 of 10) protein_coding-intron (ENSMUSG00000040282.13, intron 10 of 10) 55285 ENSMUSG00000088606.1 ENSMUSG00000088606 ENSMUST00000157981 Mir1951 miRNA Interval_39938 chr12 99933880 99934892 + 0 NA intron (ENSMUSG00000021177.16, intron 13 of 15) protein_coding-intron (ENSMUSG00000021177.16, intron 12 of 14) 29458 ENSMUSG00000113223.1 ENSMUSG00000113223 ENSMUST00000221445 Gm48147 unprocessed_pseudogene Interval_150510 chr7 111547326 111547538 + 0 NA intron (ENSMUSG00000038296.14, intron 6 of 10) protein_coding-intron (ENSMUSG00000038296.14, intron 6 of 10) -160100 ENSMUSG00000109867.1 ENSMUSG00000109867 ENSMUST00000209530 Gm5338 processed_pseudogene Interval_139293 chr6 97984466 97984843 + 0 NA intron (ENSMUSG00000035158.15, intron 2 of 9) protein_coding-intron (ENSMUSG00000035158.15, intron 2 of 9) -7267 ENSMUSG00000035158.15 ENSMUSG00000035158 ENSMUST00000203938 Mitf protein_coding Interval_45548 chr13 55763503 55763750 + 0 NA intron (ENSMUSG00000021496.12, intron 2 of 3) protein_coding-intron (ENSMUSG00000021496.12, intron 2 of 3) 20868 ENSMUSG00000069223.10 ENSMUSG00000069223 ENSMUST00000152292 4930451E10Rik antisense Interval_167365 chr9 67830623 67832422 + 0 NA exon (ENSMUSG00000047990.6, exon 2 of 2) protein_coding-exon (ENSMUSG00000047990.6, exon 2 of 2) 808 ENSMUSG00000047990.6 ENSMUSG00000047990 ENSMUST00000054500 C2cd4a protein_coding Interval_125689 chr5 73268892 73269566 + 0 NA TTS (ENSMUSG00000107087.1) lincRNA-TTS (ENSMUSG00000107087.1) -3643 ENSMUSG00000106999.1 ENSMUSG00000106999 ENSMUST00000201656 Gm42734 TEC Interval_109382 chr3 141010076 141010305 + 0 NA Intergenic Intergenic 58314 ENSMUSG00000106540.1 ENSMUSG00000106540 ENSMUST00000196030 4930590L14Rik lincRNA Interval_161027 chr8 117028489 117029168 + 0 NA promoter-TSS (ENSMUSG00000034416.18) protein_coding-promoter-TSS (ENSMUSG00000034416.18) -4733 ENSMUSG00000034416.18 ENSMUSG00000034416 ENSMUST00000160449 Pkd1l2 protein_coding Interval_9374 chr1 156648481 156649276 + 0 NA exon (ENSMUSG00000026596.13, exon 13 of 13) protein_coding-exon (ENSMUSG00000026596.13, exon 13 of 13) 25457 ENSMUSG00000060519.11 ENSMUSG00000060519 ENSMUST00000190607 Tor3a protein_coding Interval_42692 chr13 17992521 17993707 + 0 NA promoter-TSS (ENSMUSG00000075054.5) protein_coding-promoter-TSS (ENSMUSG00000075054.5) -11 ENSMUSG00000075054.5 ENSMUSG00000075054 ENSMUST00000222308 Yae1d1 protein_coding Interval_161598 chr8 121477793 121478791 + 0 NA intron (ENSMUSG00000092329.1, intron 1 of 15) protein_coding-intron (ENSMUSG00000092329.1, intron 1 of 15) 43312 ENSMUSG00000097438.1 ENSMUSG00000097438 ENSMUST00000181666 Gm26784 lincRNA Interval_108082 chr3 121416822 121420909 + 0 NA Intergenic Intergenic 8709 ENSMUSG00000105813.1 ENSMUSG00000105813 ENSMUST00000197338 Gm42928 TEC Interval_151892 chr7 127373716 127374249 + 0 NA TTS (ENSMUSG00000054381.5) protein_coding-TTS (ENSMUSG00000054381.5) 2034 ENSMUSG00000054381.5 ENSMUSG00000054381 ENSMUST00000206942 Zfp747 protein_coding Interval_19532 chr10 102432817 102433620 + 0 NA promoter-TSS (ENSMUSG00000112012.1) TEC-promoter-TSS (ENSMUSG00000112012.1) -880 ENSMUSG00000112012.1 ENSMUSG00000112012 ENSMUST00000220420 Gm47025 TEC Interval_113091 chr4 48044595 48046013 + 0 NA promoter-TSS (ENSMUSG00000028341.9) protein_coding-promoter-TSS (ENSMUSG00000028341.9) 73 ENSMUSG00000028341.9 ENSMUSG00000028341 ENSMUST00000133539 Nr4a3 protein_coding Interval_89466 chr2 20813356 20815506 + 0 NA Intergenic Intergenic 45365 ENSMUSG00000036591.16 ENSMUSG00000036591 ENSMUST00000173654 Arhgap21 protein_coding Interval_138577 chr6 89521638 89521917 + 0 NA intron (ENSMUSG00000030086.16, intron 4 of 5) protein_coding-intron (ENSMUSG00000030086.16, intron 4 of 7) 5678 ENSMUSG00000107680.1 ENSMUSG00000107680 ENSMUST00000205126 Gm43903 TEC Interval_43396 chr13 30044591 30046294 + 0 NA Intergenic Intergenic -13235 ENSMUSG00000085188.1 ENSMUSG00000085188 ENSMUST00000139576 Gm11368 lincRNA Interval_145746 chr7 37999446 38000350 + 0 NA intron (ENSMUSG00000030421.9, intron 1 of 10) protein_coding-intron (ENSMUSG00000030421.9, intron 1 of 10) 23653 ENSMUSG00000030421.9 ENSMUSG00000030421 ENSMUST00000206169 Uri1 protein_coding Interval_68747 chr16 85456901 85457848 + 0 NA exon (ENSMUSG00000041134.15, exon 4 of 4) protein_coding-exon (ENSMUSG00000041134.15, exon 4 of 4) 93043 ENSMUSG00000041134.15 ENSMUSG00000041134 ENSMUST00000162621 Cyyr1 protein_coding Interval_9235 chr1 155306940 155307437 + 0 NA intron (ENSMUSG00000026469.14, intron 10 of 13) protein_coding-intron (ENSMUSG00000026469.14, intron 11 of 14) -8778 ENSMUSG00000093286.1 ENSMUSG00000093286 ENSMUST00000175545 Gm22569 miRNA Interval_28850 chr11 78777558 78778052 + 0 NA Intergenic Intergenic -23283 ENSMUSG00000080600.2 ENSMUSG00000080600 ENSMUST00000116950 Gm23840 miRNA Interval_129931 chr5 123132190 123133587 + 0 NA promoter-TSS (ENSMUSG00000029449.11) protein_coding-promoter-TSS (ENSMUSG00000029449.11) -492 ENSMUSG00000029449.11 ENSMUSG00000029449 ENSMUST00000031401 Rhof protein_coding Interval_66385 chr16 33510939 33511348 + 0 NA Intergenic Intergenic -105247 ENSMUSG00000035506.16 ENSMUSG00000035506 ENSMUST00000149291 Slc12a8 protein_coding Interval_55218 chr14 79412143 79412359 + 0 NA intron (ENSMUSG00000022022.3, intron 7 of 9) protein_coding-intron (ENSMUSG00000022022.3, intron 7 of 10) -14260 ENSMUSG00000043881.9 ENSMUSG00000043881 ENSMUST00000061222 Kbtbd7 protein_coding Interval_61952 chr15 85455687 85456362 + 0 NA intron (ENSMUSG00000016541.10, intron 10 of 11) protein_coding-intron (ENSMUSG00000016541.10, intron 10 of 11) 47203 ENSMUSG00000096607.1 ENSMUSG00000096607 ENSMUST00000178942 7530416G11Rik protein_coding Interval_171724 chr9 120517128 120517333 + 0 NA Intergenic Intergenic -4583 ENSMUSG00000111816.1 ENSMUSG00000111816 ENSMUST00000214719 Gm7229 unprocessed_pseudogene Interval_8586 chr1 143554744 143556240 + 0 NA Intergenic Intergenic -85172 ENSMUSG00000033849.3 ENSMUSG00000033849 ENSMUST00000038252 B3galt2 protein_coding Interval_152631 chr7 135586607 135587330 + 0 NA intron (ENSMUSG00000041836.10, intron 1 of 19) protein_coding-intron (ENSMUSG00000041836.10, intron 1 of 20) -6420 ENSMUSG00000041836.10 ENSMUSG00000041836 ENSMUST00000211092 Ptpre protein_coding Interval_4815 chr1 79671367 79673235 + 0 NA promoter-TSS (ENSMUSG00000054702.14) protein_coding-promoter-TSS (ENSMUSG00000054702.14) -329 ENSMUSG00000054702.14 ENSMUSG00000054702 ENSMUST00000160706 Ap1s3 protein_coding Interval_61765 chr15 83958418 83959248 + 0 NA intron (ENSMUSG00000022441.17, intron 10 of 31) protein_coding-intron (ENSMUSG00000022441.17, intron 10 of 31) -12234 ENSMUSG00000022441.17 ENSMUSG00000022441 ENSMUST00000122836 Efcab6 protein_coding Interval_149605 chr7 99995286 99995660 + 0 NA Intergenic Intergenic -1303 ENSMUSG00000109384.1 ENSMUSG00000109384 ENSMUST00000208132 Gm17931 processed_pseudogene Interval_96138 chr2 119978180 119978623 + 0 NA intron (ENSMUSG00000033902.12, intron 1 of 30) protein_coding-intron (ENSMUSG00000033902.12, intron 1 of 29) 5498 ENSMUSG00000033902.12 ENSMUSG00000033902 ENSMUST00000148161 Mapkbp1 protein_coding Interval_115369 chr4 98243296 98244804 + 0 NA Intergenic Intergenic -8760 ENSMUSG00000082388.1 ENSMUSG00000082388 ENSMUST00000121092 Gm12692 processed_pseudogene Interval_114061 chr4 62823701 62823972 + 0 NA Intergenic Intergenic 11408 ENSMUSG00000077161.1 ENSMUSG00000077161 ENSMUST00000103973 Gm24117 snoRNA Interval_22608 chr11 12266076 12266308 + 0 NA TTS (ENSMUSG00000020173.17) protein_coding-TTS (ENSMUSG00000020173.17) -56083 ENSMUSG00000086584.8 ENSMUSG00000086584 ENSMUST00000174550 Gm12002 antisense Interval_8272 chr1 136878785 136879842 + 0 NA intron (ENSMUSG00000026398.14, intron 8 of 8) protein_coding-intron (ENSMUSG00000026398.14, intron 8 of 8) 69860 ENSMUSG00000026398.14 ENSMUSG00000026398 ENSMUST00000195428 Nr5a2 protein_coding Interval_172104 chrX 7604958 7605750 + 0 NA promoter-TSS (ENSMUSG00000103436.1) processed_transcript-promoter-TSS (ENSMUSG00000103436.1) 27 ENSMUSG00000103436.1 ENSMUSG00000103436 ENSMUST00000126170 Gm36995 processed_transcript Interval_147737 chr7 73222207 73223611 + 0 NA intron (ENSMUSG00000108513.1, intron 2 of 2) lincRNA-intron (ENSMUSG00000108513.1, intron 2 of 2) 15622 ENSMUSG00000108513.1 ENSMUSG00000108513 ENSMUST00000205509 Gm30075 lincRNA Interval_29193 chr11 81330162 81331707 + 0 NA intron (ENSMUSG00000020704.13, intron 1 of 9) protein_coding-intron (ENSMUSG00000020704.13, intron 1 of 9) -54079 ENSMUSG00000086971.1 ENSMUSG00000086971 ENSMUST00000141593 4930527B05Rik antisense Interval_119696 chr4 139287133 139288044 + 0 NA TTS (ENSMUSG00000028745.18) protein_coding-TTS (ENSMUSG00000028745.18) 23077 ENSMUSG00000028744.15 ENSMUSG00000028744 ENSMUST00000141007 Pqlc2 protein_coding Interval_171719 chr9 120461575 120462714 + 0 NA intron (ENSMUSG00000041794.13, intron 13 of 16) protein_coding-intron (ENSMUSG00000041794.13, intron 13 of 16) -30088 ENSMUSG00000006941.5 ENSMUSG00000006941 ENSMUST00000007139 Eif1b protein_coding Interval_1615 chr1 29988364 29988642 + 0 NA Intergenic Intergenic 2569 ENSMUSG00000096829.1 ENSMUSG00000096829 ENSMUST00000178702 Gm23771 miRNA Interval_84741 chr19 16082785 16083062 + 0 NA Intergenic Intergenic -50373 ENSMUSG00000024639.5 ENSMUSG00000024639 ENSMUST00000167656 Gnaq protein_coding Interval_128477 chr5 113553427 113553680 + 0 NA exon (ENSMUSG00000063430.9, exon 1 of 1) protein_coding-exon (ENSMUSG00000063430.9, exon 1 of 1) -25235 ENSMUSG00000063430.9 ENSMUSG00000063430 ENSMUST00000198673 Wscd2 protein_coding Interval_20572 chr10 119130415 119131685 + 0 NA Intergenic Intergenic 19426 ENSMUSG00000112609.1 ENSMUSG00000112609 ENSMUST00000220151 Gm47480 lincRNA Interval_117961 chr4 127352624 127352911 + 0 NA intron (ENSMUSG00000046623.8, intron 1 of 1) protein_coding-intron (ENSMUSG00000046623.8, intron 1 of 1) 1314 ENSMUSG00000046623.8 ENSMUSG00000046623 ENSMUST00000060419 Gjb4 protein_coding Interval_34114 chr11 120712775 120714424 + 0 NA promoter-TSS (ENSMUSG00000025145.13) protein_coding-promoter-TSS (ENSMUSG00000025145.13) -1616 ENSMUSG00000025144.17 ENSMUSG00000025144 ENSMUST00000026137 Cenpx protein_coding Interval_44368 chr13 44340544 44341021 + 0 NA Intergenic Intergenic 50335 ENSMUSG00000112936.1 ENSMUSG00000112936 ENSMUST00000222879 Gm33958 lincRNA Interval_114150 chr4 64990747 64991387 + 0 NA Intergenic Intergenic -20163 ENSMUSG00000080805.1 ENSMUSG00000080805 ENSMUST00000118565 Gm11219 processed_pseudogene Interval_35322 chr12 20620399 20620889 + 0 NA intron (ENSMUSG00000113157.2, intron 1 of 1) lincRNA-intron (ENSMUSG00000116883.1, intron 1 of 4) 5301 ENSMUSG00000116883.1 ENSMUSG00000116883 ENSMUST00000222348 Gm49700 lincRNA Interval_161617 chr8 121598554 121599509 + 0 NA TTS (ENSMUSG00000031812.16) protein_coding-TTS (ENSMUSG00000031812.16) 5483 ENSMUSG00000061410.6 ENSMUSG00000061410 ENSMUST00000134212 Zcchc14 protein_coding Interval_112583 chr4 43398480 43399982 + 0 NA intron (ENSMUSG00000035969.15, intron 1 of 1) protein_coding-intron (ENSMUSG00000035969.15, intron 1 of 11) -15465 ENSMUSG00000035969.15 ENSMUSG00000035969 ENSMUST00000123447 Rusc2 protein_coding Interval_47430 chr13 84058953 84059760 + 0 NA intron (ENSMUSG00000098087.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000098087.1, intron 1 of 1) 5416 ENSMUSG00000098087.1 ENSMUSG00000098087 ENSMUST00000182477 Gm17750 lincRNA Interval_65969 chr16 30599219 30601596 + 0 NA exon (ENSMUSG00000046546.3, exon 1 of 1) protein_coding-exon (ENSMUSG00000046546.3, exon 1 of 1) 684 ENSMUSG00000046546.3 ENSMUSG00000046546 ENSMUST00000059078 Fam43a protein_coding Interval_86887 chr19 44649680 44650368 + 0 NA Intergenic Intergenic 35262 ENSMUSG00000117911.1 ENSMUSG00000117911 ENSMUST00000236677 Gm35460 lincRNA Interval_98458 chr2 152544535 152544930 + 0 NA Intergenic Intergenic -4634 ENSMUSG00000044249.3 ENSMUSG00000044249 ENSMUST00000060598 Defb29 protein_coding Interval_46742 chr13 69794548 69794866 + 0 NA Intergenic Intergenic -7688 ENSMUSG00000021598.9 ENSMUSG00000021598 ENSMUST00000220649 Med10 protein_coding Interval_108642 chr3 129724831 129725680 + 0 NA promoter-TSS (ENSMUSG00000028017.7) protein_coding-promoter-TSS (ENSMUSG00000028017.7) -178 ENSMUSG00000028017.7 ENSMUSG00000028017 ENSMUST00000198093 Egf protein_coding Interval_77334 chr17 88042291 88042646 + 0 NA intron (ENSMUSG00000005371.15, intron 1 of 22) protein_coding-intron (ENSMUSG00000005371.15, intron 1 of 22) 22775 ENSMUSG00000005371.15 ENSMUSG00000005371 ENSMUST00000235056 Fbxo11 protein_coding Interval_46504 chr13 66680073 66681444 + 0 NA promoter-TSS (ENSMUSG00000114327.1) lincRNA-promoter-TSS (ENSMUSG00000114327.1) -196 ENSMUSG00000114327.1 ENSMUSG00000114327 ENSMUST00000225998 Gm40988 lincRNA Interval_128711 chr5 114867831 114868248 + 0 NA promoter-TSS (ENSMUSG00000080707.1) processed_pseudogene-promoter-TSS (ENSMUSG00000080707.1) -14 ENSMUSG00000080707.1 ENSMUSG00000080707 ENSMUST00000119930 Gm13823 processed_pseudogene Interval_88303 chr2 3504489 3504788 + 0 NA exon (ENSMUSG00000051396.15, exon 5 of 5) protein_coding-exon (ENSMUSG00000051396.15, exon 5 of 5) 8152 ENSMUSG00000051396.15 ENSMUSG00000051396 ENSMUST00000140494 Gm45902 protein_coding Interval_102544 chr3 27646911 27647367 + 0 NA intron (ENSMUSG00000039286.12, intron 1 of 4) protein_coding-intron (ENSMUSG00000039286.12, intron 1 of 25) -62144 ENSMUSG00000092695.1 ENSMUSG00000092695 ENSMUST00000174954 Mir3092 miRNA Interval_4458 chr1 74326058 74327315 + 0 NA intron (ENSMUSG00000026179.14, intron 3 of 10) protein_coding-intron (ENSMUSG00000026179.14, intron 2 of 9) -5977 ENSMUSG00000026179.14 ENSMUSG00000026179 ENSMUST00000190398 Pnkd protein_coding Interval_31900 chr11 103706944 103707615 + 0 NA intron (ENSMUSG00000085154.7, intron 2 of 2) processed_transcript-intron (ENSMUSG00000085154.7, intron 2 of 2) 9555 ENSMUSG00000085154.7 ENSMUSG00000085154 ENSMUST00000129780 C130046K22Rik processed_transcript Interval_12841 chr10 6149869 6150506 + 0 NA Intergenic Intergenic -217489 ENSMUSG00000112179.1 ENSMUSG00000112179 ENSMUST00000219296 Gm3213 processed_pseudogene Interval_80002 chr18 36571140 36571435 + 0 NA intron (ENSMUSG00000024483.19, intron 1 of 33) protein_coding-intron (ENSMUSG00000024483.19, intron 1 of 33) -38671 ENSMUSG00000085172.1 ENSMUSG00000085172 ENSMUST00000153606 Gm6542 processed_pseudogene Interval_8984 chr1 152892904 152893213 + 0 NA intron (ENSMUSG00000042772.15, intron 1 of 22) protein_coding-intron (ENSMUSG00000042772.15, intron 1 of 21) -12760 ENSMUSG00000100394.1 ENSMUSG00000100394 ENSMUST00000185888 Gm28791 sense_intronic Interval_10143 chr1 166055571 166056853 + 0 NA Intergenic Intergenic -12521 ENSMUSG00000102890.1 ENSMUSG00000102890 ENSMUST00000195801 Gm7626 processed_pseudogene Interval_132363 chr5 144475412 144475653 + 0 NA Intergenic Intergenic 68930 ENSMUSG00000083574.1 ENSMUSG00000083574 ENSMUST00000118354 Gm15709 processed_pseudogene Interval_51515 chr14 29382810 29383270 + 0 NA intron (ENSMUSG00000021991.9, intron 5 of 37) protein_coding-intron (ENSMUSG00000021991.9, intron 5 of 37) -49305 ENSMUSG00000021991.9 ENSMUSG00000021991 ENSMUST00000224128 Cacna2d3 protein_coding Interval_52357 chr14 45381029 45381519 + 0 NA TTS (ENSMUSG00000037722.8) protein_coding-TTS (ENSMUSG00000037722.8) 2169 ENSMUSG00000037722.8 ENSMUSG00000037722 ENSMUST00000226590 Gnpnat1 protein_coding Interval_163295 chr9 20662094 20662918 + 0 NA intron (ENSMUSG00000032171.7, intron 3 of 3) protein_coding-intron (ENSMUSG00000032171.7, intron 3 of 3) 10411 ENSMUSG00000032171.7 ENSMUSG00000032171 ENSMUST00000034689 Pin1 protein_coding Interval_81869 chr18 65519829 65521404 + 0 NA Intergenic Intergenic 11185 ENSMUSG00000117860.1 ENSMUSG00000117860 ENSMUST00000236404 Gm30018 lincRNA Interval_86695 chr19 42701218 42702152 + 0 NA Intergenic Intergenic -1783 ENSMUSG00000077768.1 ENSMUSG00000077768 ENSMUST00000104580 Gm25216 snoRNA Interval_104663 chr3 69223854 69224306 + 0 NA TTS (ENSMUSG00000098207.1) protein_coding-TTS (ENSMUSG00000098207.1) 1661 ENSMUSG00000098207.1 ENSMUSG00000098207 ENSMUST00000183126 Arl14 protein_coding Interval_144944 chr7 29039634 29040753 + 0 NA intron (ENSMUSG00000030592.18, intron 88 of 108) protein_coding-intron (ENSMUSG00000030592.18, intron 87 of 105) -5435 ENSMUSG00000105563.1 ENSMUSG00000105563 ENSMUST00000200205 Gm44408 miRNA Interval_10725 chr1 173529953 173530170 + 0 NA intron (ENSMUSG00000070501.14, intron 1 of 4) protein_coding-intron (ENSMUSG00000070501.14, intron 1 of 6) 5880 ENSMUSG00000070501.14 ENSMUSG00000070501 ENSMUST00000195022 Ifi214 protein_coding Interval_55530 chr14 90934121 90934386 + 0 NA Intergenic Intergenic 174039 ENSMUSG00000088746.1 ENSMUSG00000088746 ENSMUST00000158121 Gm23225 snoRNA Interval_128531 chr5 113863733 113864549 + 0 NA TTS (ENSMUSG00000106623.1) TEC-TTS (ENSMUSG00000106623.1) 3980 ENSMUSG00000106623.1 ENSMUSG00000106623 ENSMUST00000198299 Gm43335 TEC Interval_15093 chr10 42523920 42524105 + 0 NA intron (ENSMUSG00000019804.12, intron 1 of 2) protein_coding-intron (ENSMUSG00000019804.12, intron 1 of 3) 21982 ENSMUSG00000019804.12 ENSMUSG00000019804 ENSMUST00000105499 Snx3 protein_coding Interval_148467 chr7 81509728 81510324 + 0 NA Intergenic Intergenic -11755 ENSMUSG00000061877.13 ENSMUSG00000061877 ENSMUST00000207871 BC048679 protein_coding Interval_53626 chr14 60256443 60256977 + 0 NA Intergenic Intergenic -5279 ENSMUSG00000063895.7 ENSMUSG00000063895 ENSMUST00000225805 Nupl1 protein_coding Interval_36147 chr12 36373298 36374410 + 0 NA promoter-TSS (ENSMUSG00000088906.1) snoRNA-promoter-TSS (ENSMUSG00000088906.1) 29 ENSMUSG00000088906.1 ENSMUSG00000088906 ENSMUST00000158281 Gm25438 snoRNA Interval_81330 chr18 58159749 58160110 + 0 NA intron (ENSMUSG00000024598.9, intron 5 of 11) protein_coding-intron (ENSMUSG00000024598.9, intron 5 of 64) 49997 ENSMUSG00000024598.9 ENSMUSG00000024598 ENSMUST00000235779 Fbn2 protein_coding Interval_44020 chr13 39877776 39878264 + 0 NA exon (ENSMUSG00000114957.1, exon 3 of 3) lincRNA-exon (ENSMUSG00000114957.1, exon 3 of 3) 6361 ENSMUSG00000114957.1 ENSMUSG00000114957 ENSMUST00000224937 Gm47316 lincRNA Interval_7658 chr1 132886096 132886471 + 0 NA intron (ENSMUSG00000026443.3, intron 1 of 1) protein_coding-intron (ENSMUSG00000026443.3, intron 1 of 1) 5928 ENSMUSG00000026443.3 ENSMUSG00000026443 ENSMUST00000159088 Lrrn2 protein_coding Interval_161967 chr8 124143040 124145102 + 0 NA intron (ENSMUSG00000092329.1, intron 1 of 15) protein_coding-intron (ENSMUSG00000092329.1, intron 1 of 15) -16002 ENSMUSG00000110482.1 ENSMUSG00000110482 ENSMUST00000212467 Gm3889 processed_pseudogene Interval_17492 chr10 77220243 77220739 + 0 NA Intergenic Intergenic 38732 ENSMUSG00000078444.3 ENSMUSG00000078444 ENSMUST00000105408 Gm10941 bidirectional_promoter_lncRNA Interval_39971 chr12 100166370 100166569 + 0 NA Intergenic Intergenic -20542 ENSMUSG00000113335.1 ENSMUSG00000113335 ENSMUST00000220866 Gm48296 TEC Interval_121687 chr5 5296563 5297004 + 0 NA intron (ENSMUSG00000028926.15, intron 1 of 2) protein_coding-intron (ENSMUSG00000028926.15, intron 2 of 14) 10219 ENSMUSG00000106202.1 ENSMUSG00000106202 ENSMUST00000198021 Gm43727 sense_intronic Interval_18449 chr10 86079895 86080523 + 0 NA exon (ENSMUSG00000059602.14, exon 8 of 14) protein_coding-exon (ENSMUSG00000059602.14, exon 8 of 14) -15650 ENSMUSG00000112493.1 ENSMUSG00000112493 ENSMUST00000218077 4930486F22Rik antisense Interval_36127 chr12 36156255 36158192 + 0 NA promoter-TSS (ENSMUSG00000020547.5) protein_coding-promoter-TSS (ENSMUSG00000020547.5) -131 ENSMUSG00000020547.5 ENSMUSG00000020547 ENSMUST00000220763 Bzw2 protein_coding Interval_41211 chr12 111809800 111810049 + 0 NA promoter-TSS (ENSMUSG00000021287.12) protein_coding-promoter-TSS (ENSMUSG00000021287.12) 58 ENSMUSG00000021287.12 ENSMUSG00000021287 ENSMUST00000133679 Xrcc3 protein_coding Interval_145480 chr7 35111546 35112171 + 0 NA Intergenic Intergenic -7435 ENSMUSG00000034957.10 ENSMUSG00000034957 ENSMUST00000042985 Cebpa protein_coding Interval_132838 chr5 148245641 148246269 + 0 NA intron (ENSMUSG00000029651.16, intron 7 of 14) protein_coding-intron (ENSMUSG00000029651.16, intron 7 of 14) 9963 ENSMUSG00000029651.16 ENSMUSG00000029651 ENSMUST00000085554 Mtus2 protein_coding Interval_24062 chr11 29877542 29878171 + 0 NA intron (ENSMUSG00000044072.14, intron 7 of 41) protein_coding-intron (ENSMUSG00000044072.14, intron 7 of 41) 28395 ENSMUSG00000088135.1 ENSMUSG00000088135 ENSMUST00000157510 Gm22588 snoRNA Interval_134702 chr6 30509220 30510496 + 0 NA promoter-TSS (ENSMUSG00000029784.13) protein_coding-promoter-TSS (ENSMUSG00000029784.13) -3840 ENSMUSG00000029784.13 ENSMUSG00000029784 ENSMUST00000131485 Ssmem1 protein_coding Interval_150937 chr7 116468003 116468258 + 0 NA Intergenic Intergenic 24274 ENSMUSG00000108566.1 ENSMUSG00000108566 ENSMUST00000206800 Gm45031 processed_pseudogene Interval_16760 chr10 68008738 68009239 + 0 NA intron (ENSMUSG00000037846.18, intron 6 of 14) protein_coding-intron (ENSMUSG00000037846.18, intron 6 of 14) 17638 ENSMUSG00000086838.1 ENSMUSG00000086838 ENSMUST00000143555 Gm16212 antisense Interval_11301 chr1 180836685 180837077 + 0 NA Intergenic Intergenic 4112 ENSMUSG00000084558.1 ENSMUSG00000084558 ENSMUST00000122609 Gm24836 snRNA Interval_26250 chr11 55427966 55428869 + 0 NA Intergenic Intergenic -8092 ENSMUSG00000018593.13 ENSMUSG00000018593 ENSMUST00000125787 Sparc protein_coding Interval_32099 chr11 105237392 105238131 + 0 NA intron (ENSMUSG00000020694.17, intron 6 of 17) protein_coding-intron (ENSMUSG00000020694.17, intron 6 of 20) 28908 ENSMUSG00000020694.17 ENSMUSG00000020694 ENSMUST00000146910 Tlk2 protein_coding Interval_62176 chr15 88579555 88580077 + 0 NA Intergenic Intergenic -20486 ENSMUSG00000054117.8 ENSMUSG00000054117 ENSMUST00000066949 Zdhhc25 protein_coding Interval_49955 chr13 118856817 118857228 + 0 NA Intergenic Intergenic 1392 ENSMUSG00000114868.1 ENSMUSG00000114868 ENSMUST00000224309 Gm47335 processed_pseudogene Interval_34643 chr12 8306372 8307207 + 0 NA Intergenic Intergenic -4835 ENSMUSG00000037660.5 ENSMUSG00000037660 ENSMUST00000037313 Gdf7 protein_coding Interval_147340 chr7 65955698 65955973 + 0 NA intron (ENSMUSG00000030513.14, intron 1 of 2) protein_coding-intron (ENSMUSG00000030513.14, intron 7 of 21) 2823 ENSMUSG00000030513.14 ENSMUSG00000030513 ENSMUST00000177272 Pcsk6 protein_coding Interval_41663 chr12 117519802 117520446 + 0 NA intron (ENSMUSG00000041992.9, intron 2 of 27) protein_coding-intron (ENSMUSG00000041992.9, intron 2 of 27) -54218 ENSMUSG00000089482.1 ENSMUSG00000089482 ENSMUST00000158857 Gm24741 rRNA Interval_73282 chr17 35954955 35956037 + 0 NA Intergenic Intergenic 5318 ENSMUSG00000077931.1 ENSMUSG00000077931 ENSMUST00000104738 Mir877 miRNA Interval_39344 chr12 86829760 86830349 + 0 NA Intergenic Intergenic 16413 ENSMUSG00000113555.1 ENSMUSG00000113555 ENSMUST00000222765 Gm10095 processed_pseudogene Interval_129916 chr5 123049202 123049864 + 0 NA Intergenic Intergenic -2528 ENSMUSG00000029477.14 ENSMUSG00000029477 ENSMUST00000145257 Morn3 protein_coding Interval_19075 chr10 94253392 94253608 + 0 NA Intergenic Intergenic 45203 ENSMUSG00000053420.6 ENSMUSG00000053420 ENSMUST00000065826 Gm4792 protein_coding Interval_129021 chr5 116797266 116798345 + 0 NA intron (ENSMUSG00000106909.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000106909.1, intron 1 of 2) -13426 ENSMUSG00000107237.1 ENSMUSG00000107237 ENSMUST00000201443 Gm29926 lincRNA Interval_40663 chr12 106599521 106599898 + 0 NA Intergenic Intergenic 40959 ENSMUSG00000091583.1 ENSMUSG00000091583 ENSMUST00000146663 Gm17033 lincRNA Interval_102256 chr3 20034751 20035635 + 0 NA promoter-TSS (ENSMUSG00000027615.14) protein_coding-promoter-TSS (ENSMUSG00000027615.14) 101 ENSMUSG00000027615.14 ENSMUSG00000027615 ENSMUST00000133094 Hps3 protein_coding Interval_102933 chr3 32915123 32915671 + 0 NA TTS (ENSMUSG00000056900.13) protein_coding-TTS (ENSMUSG00000056900.13) -34789 ENSMUSG00000081883.2 ENSMUSG00000081883 ENSMUST00000119937 Gm15574 processed_pseudogene Interval_67444 chr16 48675303 48676441 + 0 NA Intergenic Intergenic 74576 ENSMUSG00000116640.1 ENSMUSG00000116640 ENSMUST00000231404 Gm8670 processed_pseudogene Interval_33155 chr11 114809549 114810620 + 0 NA Intergenic Intergenic 11160 ENSMUSG00000034677.9 ENSMUSG00000034677 ENSMUST00000106584 Gpr142 protein_coding Interval_8575 chr1 143197635 143197872 + 0 NA Intergenic Intergenic -103137 ENSMUSG00000101795.2 ENSMUSG00000101795 ENSMUST00000185806 Gm5835 processed_pseudogene Interval_127586 chr5 105614096 105614437 + 0 NA Intergenic Intergenic 33826 ENSMUSG00000085771.1 ENSMUSG00000085771 ENSMUST00000150195 C230066G23Rik sense_intronic Interval_164814 chr9 42123590 42124840 + 0 NA promoter-TSS (ENSMUSG00000049313.8) protein_coding-promoter-TSS (ENSMUSG00000049313.8) -18146 ENSMUSG00000111167.1 ENSMUSG00000111167 ENSMUST00000217090 Gm39321 lincRNA Interval_73126 chr17 34957627 34960005 + 0 NA exon (ENSMUSG00000090877.3, exon 1 of 1) protein_coding-exon (ENSMUSG00000090877.3, exon 1 of 1) 422 ENSMUSG00000090877.3 ENSMUSG00000090877 ENSMUST00000172753 Hspa1b protein_coding Interval_59255 chr15 50112400 50112626 + 0 NA Intergenic Intergenic -174385 ENSMUSG00000115478.1 ENSMUSG00000115478 ENSMUST00000227182 Gm49198 lincRNA Interval_16141 chr10 60991308 60992210 + 0 NA Intergenic Intergenic 31036 ENSMUSG00000080526.1 ENSMUSG00000080526 ENSMUST00000116876 Mir466j miRNA Interval_65449 chr16 22397821 22398945 + 0 NA intron (ENSMUSG00000013089.15, intron 9 of 12) protein_coding-intron (ENSMUSG00000013089.15, intron 9 of 12) 3446 ENSMUSG00000013089.15 ENSMUSG00000013089 ENSMUST00000170393 Etv5 protein_coding Interval_9521 chr1 158386712 158387294 + 0 NA intron (ENSMUSG00000026587.15, intron 1 of 21) protein_coding-intron (ENSMUSG00000026587.15, intron 1 of 22) 11067 ENSMUSG00000103762.1 ENSMUSG00000103762 ENSMUST00000193534 Gm37861 TEC Interval_144413 chr7 25005542 25006052 + 0 NA promoter-TSS (ENSMUSG00000040907.15) protein_coding-promoter-TSS (ENSMUSG00000040907.15) 146 ENSMUSG00000040907.15 ENSMUSG00000040907 ENSMUST00000125444 Atp1a3 protein_coding Interval_24538 chr11 34170480 34170944 + 0 NA Intergenic Intergenic 28885 ENSMUSG00000086243.1 ENSMUSG00000086243 ENSMUST00000131630 Gm12121 lincRNA Interval_52398 chr14 45601721 45601968 + 0 NA intron (ENSMUSG00000037697.19, intron 1 of 4) protein_coding-intron (ENSMUSG00000037697.19, intron 10 of 11) 12222 ENSMUSG00000115148.1 ENSMUSG00000115148 ENSMUST00000227258 Gm49125 TEC Interval_9038 chr1 153226927 153227882 + 0 NA intron (ENSMUSG00000026478.14, intron 25 of 27) protein_coding-intron (ENSMUSG00000026478.14, intron 25 of 27) 11922 ENSMUSG00000026478.14 ENSMUSG00000026478 ENSMUST00000159251 Lamc1 protein_coding Interval_1327 chr1 20699814 20700461 + 0 NA Intergenic Intergenic 17368 ENSMUSG00000065480.1 ENSMUSG00000065480 ENSMUST00000083546 Mir133b miRNA Interval_67029 chr16 41532448 41533823 + 0 NA promoter-TSS (ENSMUSG00000061080.11) protein_coding-promoter-TSS (ENSMUSG00000061080.11) -102043 ENSMUSG00000101463.1 ENSMUSG00000101463 ENSMUST00000186327 Gm28750 antisense Interval_14678 chr10 38894375 38895766 + 0 NA Intergenic Intergenic -33219 ENSMUSG00000111431.1 ENSMUSG00000111431 ENSMUST00000213395 Gm17779 processed_pseudogene Interval_67470 chr16 49193316 49193598 + 0 NA intron (ENSMUSG00000092009.1, intron 38 of 40) protein_coding-intron (ENSMUSG00000092009.1, intron 38 of 40) 62315 ENSMUSG00000073976.10 ENSMUSG00000073976 ENSMUST00000098226 1700026J12Rik lincRNA Interval_43389 chr13 29969934 29970149 + 0 NA intron (ENSMUSG00000016477.18, intron 1 of 6) protein_coding-intron (ENSMUSG00000016477.18, intron 1 of 6) 14350 ENSMUSG00000016477.18 ENSMUSG00000016477 ENSMUST00000146092 E2f3 protein_coding Interval_6898 chr1 120506362 120507641 + 0 NA Intergenic Intergenic -2245 ENSMUSG00000026390.7 ENSMUSG00000026390 ENSMUST00000186432 Marco protein_coding Interval_91853 chr2 50308847 50309848 + 0 NA intron (ENSMUSG00000085862.2, intron 1 of 2) lincRNA-intron (ENSMUSG00000085862.2, intron 1 of 2) 12442 ENSMUSG00000085862.2 ENSMUSG00000085862 ENSMUST00000228816 Gm13483 lincRNA Interval_141108 chr6 125038945 125040245 + 0 NA promoter-TSS (ENSMUSG00000030330.15) protein_coding-promoter-TSS (ENSMUSG00000030330.15) -221 ENSMUSG00000108037.2 ENSMUSG00000108037 ENSMUST00000140883 Gm44597 processed_transcript Interval_86571 chr19 41773526 41773770 + 0 NA intron (ENSMUSG00000025154.15, intron 10 of 11) protein_coding-intron (ENSMUSG00000025154.15, intron 10 of 11) 28399 ENSMUSG00000025154.15 ENSMUSG00000025154 ENSMUST00000177495 Arhgap19 protein_coding Interval_73486 chr17 37945621 37945958 + 0 NA Intergenic Intergenic -1403 ENSMUSG00000092186.1 ENSMUSG00000092186 ENSMUST00000172723 Gm5967 processed_pseudogene Interval_112309 chr4 40260154 40260391 + 0 NA exon (ENSMUSG00000036822.6, exon 3 of 3) protein_coding-exon (ENSMUSG00000036822.6, exon 3 of 3) -9512 ENSMUSG00000028407.4 ENSMUSG00000028407 ENSMUST00000207780 Smim27 protein_coding Interval_63261 chr15 99984262 99984623 + 0 NA intron (ENSMUSG00000023025.16, intron 1 of 15) protein_coding-intron (ENSMUSG00000023025.16, intron 1 of 15) -11155 ENSMUSG00000100084.2 ENSMUSG00000100084 ENSMUST00000188271 2310068J16Rik antisense Interval_102792 chr3 31060825 31062358 + 0 NA Intergenic Intergenic 22625 ENSMUSG00000098890.1 ENSMUSG00000098890 ENSMUST00000184398 Mir7008 miRNA Interval_57688 chr15 15478630 15479236 + 0 NA Intergenic Intergenic -153738 ENSMUSG00000114972.1 ENSMUSG00000114972 ENSMUST00000226279 Gm49119 processed_pseudogene Interval_105732 chr3 88985297 88985655 + 0 NA exon (ENSMUSG00000028053.13, exon 2 of 27) protein_coding-exon (ENSMUSG00000028053.13, exon 2 of 27) -14747 ENSMUSG00000095712.1 ENSMUSG00000095712 ENSMUST00000178517 Gm26465 snRNA Interval_170746 chr9 110498212 110498436 + 0 NA intron (ENSMUSG00000032489.17, intron 10 of 17) protein_coding-intron (ENSMUSG00000032489.17, intron 9 of 20) 21366 ENSMUSG00000032489.17 ENSMUSG00000032489 ENSMUST00000084952 Kif9 protein_coding Interval_11943 chr1 187366483 187367065 + 0 NA intron (ENSMUSG00000104245.1, intron 1 of 1) antisense-intron (ENSMUSG00000104245.1, intron 1 of 1) 10695 ENSMUSG00000104245.1 ENSMUSG00000104245 ENSMUST00000192285 Gm38155 antisense Interval_151699 chr7 126139191 126139826 + 0 NA intron (ENSMUSG00000000131.15, intron 2 of 4) protein_coding-intron (ENSMUSG00000000131.15, intron 9 of 23) -26137 ENSMUSG00000090559.1 ENSMUSG00000090559 ENSMUST00000165729 Gm17137 transcribed_processed_pseudogene Interval_60961 chr15 78254711 78255510 + 0 NA promoter-TSS (ENSMUSG00000071715.12) protein_coding-promoter-TSS (ENSMUSG00000071715.12) -5768 ENSMUSG00000071715.12 ENSMUSG00000071715 ENSMUST00000148646 Ncf4 protein_coding Interval_166167 chr9 57203076 57204005 + 0 NA Intergenic Intergenic 28265 ENSMUSG00000100282.1 ENSMUSG00000100282 ENSMUST00000185243 1700041C23Rik lincRNA Interval_70728 chr17 13919865 13921381 + 0 NA intron (ENSMUSG00000115221.1, intron 4 of 10) unitary_pseudogene-intron (ENSMUSG00000115221.1, intron 4 of 10) 9375 ENSMUSG00000115221.1 ENSMUSG00000115221 ENSMUST00000227377 Gm49121 unitary_pseudogene Interval_94681 chr2 93280816 93281236 + 0 NA intron (ENSMUSG00000027217.13, intron 2 of 9) protein_coding-intron (ENSMUSG00000027217.13, intron 2 of 9) 31489 ENSMUSG00000027217.13 ENSMUSG00000027217 ENSMUST00000152141 Tspan18 protein_coding Interval_1153 chr1 16177528 16178183 + 0 NA Intergenic Intergenic 32662 ENSMUSG00000104165.1 ENSMUSG00000104165 ENSMUST00000192560 Gm38249 TEC Interval_111646 chr4 25138267 25138640 + 0 NA intron (ENSMUSG00000085885.1, intron 2 of 4) processed_transcript-intron (ENSMUSG00000085885.1, intron 2 of 4) 104423 ENSMUSG00000028259.13 ENSMUSG00000028259 ENSMUST00000108204 Fhl5 protein_coding Interval_41468 chr12 114680022 114680267 + 0 NA Intergenic Intergenic 2921 ENSMUSG00000076695.7 ENSMUSG00000076695 ENSMUST00000103504 Ighv1-18 IG_V_gene Interval_96817 chr2 128553042 128553332 + 0 NA Intergenic Intergenic 5047 ENSMUSG00000082671.2 ENSMUSG00000082671 ENSMUST00000122132 Gm14006 processed_pseudogene Interval_952 chr1 13366350 13366584 + 0 NA intron (ENSMUSG00000005886.14, intron 1 of 12) protein_coding-intron (ENSMUSG00000005886.14, intron 1 of 22) -9603 ENSMUSG00000101476.1 ENSMUSG00000101476 ENSMUST00000185813 Gm29570 antisense Interval_76109 chr17 75067105 75068031 + 0 NA intron (ENSMUSG00000001870.16, intron 3 of 34) protein_coding-intron (ENSMUSG00000001870.16, intron 3 of 33) 62000 ENSMUSG00000001870.16 ENSMUSG00000001870 ENSMUST00000135750 Ltbp1 protein_coding Interval_34372 chr12 3669550 3671323 + 0 NA intron (ENSMUSG00000071454.13, intron 8 of 8) protein_coding-intron (ENSMUSG00000071454.13, intron 8 of 18) -28742 ENSMUSG00000077830.1 ENSMUSG00000077830 ENSMUST00000104640 Gm26050 miRNA Interval_132934 chr5 148817133 148817347 + 0 NA Intergenic Intergenic -3527 ENSMUSG00000087647.2 ENSMUSG00000087647 ENSMUST00000136919 Gm15407 lincRNA Interval_94198 chr2 85029045 85031007 + 0 NA intron (ENSMUSG00000027071.14, intron 1 of 10) protein_coding-intron (ENSMUSG00000027071.14, intron 1 of 11) 3284 ENSMUSG00000027071.14 ENSMUSG00000027071 ENSMUST00000127839 P2rx3 protein_coding Interval_94881 chr2 99882467 99882779 + 0 NA Intergenic Intergenic -176310 ENSMUSG00000082259.1 ENSMUSG00000082259 ENSMUST00000121353 Gm13808 processed_pseudogene Interval_118442 chr4 131638687 131639285 + 0 NA Intergenic Intergenic 33155 ENSMUSG00000087171.1 ENSMUSG00000087171 ENSMUST00000138697 Gm12962 lincRNA Interval_21394 chr10 128344781 128345324 + 0 NA intron (ENSMUSG00000005683.8, intron 1 of 10) protein_coding-intron (ENSMUSG00000005683.8, intron 1 of 10) -4189 ENSMUSG00000089313.2 ENSMUSG00000089313 ENSMUST00000158688 Gm23182 snoRNA Interval_143810 chr7 16447173 16447928 + 0 NA Intergenic Intergenic -5413 ENSMUSG00000019158.9 ENSMUSG00000019158 ENSMUST00000209536 Tmem160 protein_coding Interval_40092 chr12 101109523 101110793 + 0 NA intron (ENSMUSG00000113817.1, intron 1 of 1) transcribed_unprocessed_pseudogene-intron (ENSMUSG00000113817.1, intron 1 of 1) 6953 ENSMUSG00000113817.1 ENSMUSG00000113817 ENSMUST00000223122 Gm21056 transcribed_unprocessed_pseudogene Interval_160870 chr8 114390667 114390908 + 0 NA Intergenic Intergenic -27299 ENSMUSG00000008874.3 ENSMUSG00000008874 ENSMUST00000009018 Clec3a protein_coding Interval_127676 chr5 106543236 106543433 + 0 NA intron (ENSMUSG00000099061.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000099061.1, intron 1 of 2) 31381 ENSMUSG00000099061.1 ENSMUSG00000099061 ENSMUST00000124394 Gm28050 lincRNA Interval_39992 chr12 100326629 100327050 + 0 NA intron (ENSMUSG00000033530.8, intron 1 of 2) protein_coding-intron (ENSMUSG00000033530.8, intron 18 of 19) 36583 ENSMUSG00000113679.1 ENSMUSG00000113679 ENSMUST00000220721 Gm10432 processed_transcript Interval_48802 chr13 103430864 103431532 + 0 NA Intergenic Intergenic -10116 ENSMUSG00000087860.1 ENSMUSG00000087860 ENSMUST00000157235 Gm24441 misc_RNA Interval_130332 chr5 125875454 125875643 + 0 NA Intergenic Intergenic -26808 ENSMUSG00000091970.3 ENSMUSG00000091970 ENSMUST00000164138 Gm4868 processed_pseudogene Interval_171538 chr9 119087999 119088849 + 0 NA promoter-TSS (ENSMUSG00000010660.3) protein_coding-promoter-TSS (ENSMUSG00000010660.3) -14054 ENSMUSG00000038060.15 ENSMUSG00000038060 ENSMUST00000148611 Dlec1 protein_coding Interval_31903 chr11 103730048 103731571 + 0 NA exon (ENSMUSG00000018486.2, exon 4 of 4) protein_coding-exon (ENSMUSG00000018486.2, exon 4 of 4) 6859 ENSMUSG00000086794.1 ENSMUSG00000086794 ENSMUST00000150442 Gm11642 processed_transcript Interval_141288 chr6 126896968 126897171 + 0 NA intron (ENSMUSG00000030345.16, intron 5 of 14) protein_coding-intron (ENSMUSG00000030345.16, intron 4 of 13) -11685 ENSMUSG00000030345.16 ENSMUSG00000030345 ENSMUST00000032495 Dyrk4 protein_coding Interval_3715 chr1 61625500 61626534 + 0 NA Intergenic Intergenic -4868 ENSMUSG00000086009.1 ENSMUSG00000086009 ENSMUST00000128588 4930587A21Rik lincRNA Interval_16572 chr10 64083959 64085062 + 0 NA intron (ENSMUSG00000042846.8, intron 1 of 1) protein_coding-intron (ENSMUSG00000060843.11, intron 6 of 16) 5737 ENSMUSG00000042846.8 ENSMUSG00000042846 ENSMUST00000133588 Lrrtm3 protein_coding Interval_68800 chr16 86991384 86991898 + 0 NA intron (ENSMUSG00000116555.1, intron 6 of 6) lincRNA-intron (ENSMUSG00000116555.1, intron 6 of 6) 57619 ENSMUSG00000116555.1 ENSMUSG00000116555 ENSMUST00000231899 Gm38477 lincRNA Interval_37116 chr12 58584600 58585092 + 0 NA Intergenic Intergenic -179060 ENSMUSG00000112487.1 ENSMUSG00000112487 ENSMUST00000219517 Gm18873 processed_pseudogene Interval_122449 chr5 22861571 22861817 + 0 NA intron (ENSMUSG00000106379.1, intron 1 of 3) protein_coding-intron (ENSMUSG00000106379.1, intron 1 of 3) 6851 ENSMUSG00000105543.1 ENSMUSG00000105543 ENSMUST00000199544 Gm43169 TEC Interval_59922 chr15 61994551 61995463 + 0 NA Intergenic Intergenic 9085 ENSMUSG00000022346.16 ENSMUSG00000022346 ENSMUST00000160009 Myc protein_coding Interval_2658 chr1 43051921 43052119 + 0 NA intron (ENSMUSG00000070939.9, intron 10 of 11) protein_coding-intron (ENSMUSG00000070939.9, intron 11 of 12) -4247 ENSMUSG00000100269.1 ENSMUSG00000100269 ENSMUST00000185980 Gm28782 antisense Interval_53489 chr14 57811765 57811971 + 0 NA intron (ENSMUSG00000021965.3, intron 5 of 6) protein_coding-intron (ENSMUSG00000021965.3, intron 5 of 8) 13442 ENSMUSG00000021963.17 ENSMUSG00000021963 ENSMUST00000111267 Sap18 protein_coding Interval_88646 chr2 8616056 8616436 + 0 NA Intergenic Intergenic -17691 ENSMUSG00000084374.1 ENSMUSG00000084374 ENSMUST00000117255 Gm13255 processed_pseudogene Interval_167468 chr9 69637471 69637813 + 0 NA Intergenic Intergenic -37888 ENSMUSG00000111096.1 ENSMUSG00000111096 ENSMUST00000215589 Gm47203 processed_pseudogene Interval_116007 chr4 106946970 106949346 + 0 NA intron (ENSMUSG00000061887.14, intron 1 of 13) protein_coding-intron (ENSMUSG00000061887.14, intron 4 of 17) 74341 ENSMUSG00000085581.1 ENSMUSG00000085581 ENSMUST00000129617 Gm12786 antisense Interval_44317 chr13 43583031 43583357 + 0 NA Intergenic Intergenic -23003 ENSMUSG00000021371.5 ENSMUSG00000021371 ENSMUST00000223353 Mcur1 protein_coding Interval_142381 chr6 141249204 141250613 + 0 NA promoter-TSS (ENSMUSG00000041741.10) protein_coding-promoter-TSS (ENSMUSG00000041741.10) -58 ENSMUSG00000041741.10 ENSMUSG00000041741 ENSMUST00000189060 Pde3a protein_coding Interval_90172 chr2 28738546 28738909 + 0 NA intron (ENSMUSG00000026807.8, intron 8 of 12) protein_coding-intron (ENSMUSG00000026807.8, intron 8 of 12) -3523 ENSMUSG00000026807.8 ENSMUSG00000026807 ENSMUST00000137588 Ak8 protein_coding Interval_96530 chr2 125365566 125366003 + 0 NA intron (ENSMUSG00000027204.13, intron 23 of 64) protein_coding-intron (ENSMUSG00000027204.13, intron 24 of 65) -81806 ENSMUSG00000087682.1 ENSMUSG00000087682 ENSMUST00000130919 Gm14003 lincRNA Interval_19373 chr10 98508396 98509354 + 0 NA Intergenic Intergenic -22002 ENSMUSG00000102310.1 ENSMUSG00000102310 ENSMUST00000192275 Gm37631 TEC Interval_94950 chr2 102121312 102122450 + 0 NA intron (ENSMUSG00000048058.17, intron 1 of 5) protein_coding-intron (ENSMUSG00000048058.17, intron 1 of 5) 16238 ENSMUSG00000048058.17 ENSMUSG00000048058 ENSMUST00000127888 Ldlrad3 protein_coding Interval_169922 chr9 102993791 102994047 + 0 NA intron (ENSMUSG00000032548.14, intron 1 of 3) protein_coding-intron (ENSMUSG00000032548.14, intron 1 of 3) 2024 ENSMUSG00000084539.1 ENSMUSG00000084539 ENSMUST00000122590 Gm25842 misc_RNA Interval_162286 chr8 126776839 126777719 + 0 NA Intergenic Intergenic -18945 ENSMUSG00000110626.1 ENSMUSG00000110626 ENSMUST00000212695 Gm45805 lincRNA Interval_128582 chr5 114146233 114147923 + 0 NA intron (ENSMUSG00000042010.16, intron 1 of 52) protein_coding-intron (ENSMUSG00000042010.16, intron 1 of 52) 14998 ENSMUSG00000029591.14 ENSMUSG00000029591 ENSMUST00000200479 Ung protein_coding Interval_163706 chr9 24760445 24760878 + 0 NA intron (ENSMUSG00000031965.15, intron 4 of 5) protein_coding-intron (ENSMUSG00000031965.15, intron 4 of 7) 13623 ENSMUSG00000031965.15 ENSMUSG00000031965 ENSMUST00000216564 Tbx20 protein_coding Interval_2059 chr1 36162476 36163919 + 0 NA TTS (ENSMUSG00000037470.14) protein_coding-TTS (ENSMUSG00000037470.14) -18884 ENSMUSG00000098752.1 ENSMUSG00000098752 ENSMUST00000184790 Mir6897 miRNA Interval_159338 chr8 93844142 93844350 + 0 NA intron (ENSMUSG00000031748.16, intron 2 of 7) protein_coding-intron (ENSMUSG00000031748.16, intron 2 of 8) -30524 ENSMUSG00000097520.2 ENSMUSG00000097520 ENSMUST00000212638 4930488L21Rik antisense Interval_58072 chr15 27630046 27631300 + 0 NA promoter-TSS (ENSMUSG00000046034.8) protein_coding-promoter-TSS (ENSMUSG00000046034.8) 5 ENSMUSG00000046034.8 ENSMUSG00000046034 ENSMUST00000228439 Otulin protein_coding Interval_90237 chr2 29216113 29217041 + 0 NA intron (ENSMUSG00000035513.19, intron 2 of 5) protein_coding-intron (ENSMUSG00000035513.19, intron 2 of 8) 31548 ENSMUSG00000035513.19 ENSMUSG00000035513 ENSMUST00000149096 Ntng2 protein_coding Interval_83110 chr18 81444483 81444742 + 0 NA intron (ENSMUSG00000118227.1, intron 2 of 3) lincRNA-intron (ENSMUSG00000118227.1, intron 2 of 2) 13287 ENSMUSG00000118227.1 ENSMUSG00000118227 ENSMUST00000236435 Gm30288 lincRNA Interval_94850 chr2 97034904 97035822 + 0 NA intron (ENSMUSG00000091061.1, intron 1 of 4) protein_coding-intron (ENSMUSG00000050587.14, intron 3 of 6) -4549 ENSMUSG00000090449.1 ENSMUSG00000090449 ENSMUST00000165185 Gm17076 processed_pseudogene Interval_6397 chr1 106901424 106902092 + 0 NA Intergenic Intergenic -12861 ENSMUSG00000083613.1 ENSMUSG00000083613 ENSMUST00000120271 Pou2f3-rs1 processed_pseudogene Interval_35711 chr12 28569933 28570840 + 0 NA intron (ENSMUSG00000020636.14, intron 3 of 11) protein_coding-intron (ENSMUSG00000020636.14, intron 3 of 11) 12129 ENSMUSG00000020636.14 ENSMUSG00000020636 ENSMUST00000020965 Allc protein_coding Interval_93433 chr2 73037499 73038988 + 0 NA Intergenic Intergenic -51527 ENSMUSG00000079286.1 ENSMUSG00000079286 ENSMUST00000112062 Gm11084 protein_coding Interval_19870 chr10 110754881 110755931 + 0 NA TTS (ENSMUSG00000020185.16) protein_coding-TTS (ENSMUSG00000020185.16) 9941 ENSMUSG00000020185.16 ENSMUSG00000020185 ENSMUST00000174593 E2f7 protein_coding Interval_135256 chr6 37887315 37887729 + 0 NA intron (ENSMUSG00000029833.17, intron 2 of 7) protein_coding-intron (ENSMUSG00000029833.17, intron 1 of 18) 16711 ENSMUSG00000029833.17 ENSMUSG00000029833 ENSMUST00000135387 Trim24 protein_coding Interval_163921 chr9 28530470 28530772 + 0 NA intron (ENSMUSG00000062257.13, intron 1 of 2) protein_coding-intron (ENSMUSG00000062257.13, intron 1 of 6) 237873 ENSMUSG00000106021.1 ENSMUSG00000106021 ENSMUST00000199274 Gm44316 miRNA Interval_118724 chr4 133385783 133386380 + 0 NA intron (ENSMUSG00000028854.9, intron 1 of 11) protein_coding-intron (ENSMUSG00000028854.9, intron 1 of 11) 16305 ENSMUSG00000092745.1 ENSMUSG00000092745 ENSMUST00000175004 Mir5122 miRNA Interval_853 chr1 12691896 12693509 + 0 NA intron (ENSMUSG00000016918.15, intron 1 of 20) protein_coding-intron (ENSMUSG00000016918.15, intron 1 of 21) -21526 ENSMUSG00000101314.1 ENSMUSG00000101314 ENSMUST00000186962 Gm29663 lincRNA Interval_131474 chr5 137460917 137461575 + 0 NA intron (ENSMUSG00000079173.11, intron 14 of 86) protein_coding-intron (ENSMUSG00000079173.11, intron 15 of 87) 24570 ENSMUSG00000029711.13 ENSMUSG00000029711 ENSMUST00000111039 Epo protein_coding Interval_20678 chr10 120190609 120191392 + 0 NA intron (ENSMUSG00000020227.10, intron 1 of 11) protein_coding-intron (ENSMUSG00000020227.10, intron 1 of 11) -10658 ENSMUSG00000020225.10 ENSMUSG00000020225 ENSMUST00000123802 Tmbim4 protein_coding Interval_149143 chr7 94795339 94795568 + 0 NA Intergenic Intergenic -193045 ENSMUSG00000108433.1 ENSMUSG00000108433 ENSMUST00000205372 Gm19761 processed_pseudogene Interval_110793 chr4 8442755 8444393 + 0 NA intron (ENSMUSG00000103127.1, intron 1 of 1) TEC-intron (ENSMUSG00000103127.1, intron 1 of 1) 10673 ENSMUSG00000103127.1 ENSMUSG00000103127 ENSMUST00000194755 Gm37386 TEC Interval_15580 chr10 51791991 51792192 + 0 NA Intergenic Intergenic -5150 ENSMUSG00000112337.1 ENSMUSG00000112337 ENSMUST00000217696 Gm47614 lincRNA Interval_22405 chr11 9649464 9649845 + 0 NA intron (ENSMUSG00000004668.14, intron 59 of 61) protein_coding-intron (ENSMUSG00000004668.14, intron 59 of 61) 55969 ENSMUSG00000104137.1 ENSMUSG00000104137 ENSMUST00000195362 Gm36954 TEC Interval_40886 chr12 109090139 109091088 + 0 NA Intergenic Intergenic -7614 ENSMUSG00000113306.1 ENSMUSG00000113306 ENSMUST00000223357 Mif-ps7 processed_pseudogene Interval_68679 chr16 84644602 84644849 + 0 NA Intergenic Intergenic -2648 ENSMUSG00000116583.1 ENSMUSG00000116583 ENSMUST00000231563 Gm2349 processed_pseudogene Interval_39802 chr12 98578042 98578248 + 0 NA exon (ENSMUSG00000033854.10, exon 1 of 7) protein_coding-exon (ENSMUSG00000033854.10, exon 1 of 7) 7831 ENSMUSG00000113849.1 ENSMUSG00000113849 ENSMUST00000221302 Gm47346 TEC Interval_68040 chr16 64583160 64583618 + 0 NA intron (ENSMUSG00000068167.6, intron 1 of 2) protein_coding-intron (ENSMUSG00000068167.6, intron 1 of 2) 19019 ENSMUSG00000068167.6 ENSMUSG00000068167 ENSMUST00000089279 Csnka2ip protein_coding Interval_13850 chr10 23857109 23857505 + 0 NA intron (ENSMUSG00000020010.7, intron 3 of 6) protein_coding-intron (ENSMUSG00000020010.7, intron 3 of 6) 5845 ENSMUSG00000020010.7 ENSMUSG00000020010 ENSMUST00000020190 Vnn3 protein_coding Interval_22465 chr11 10588466 10589168 + 0 NA Intergenic Intergenic -211735 ENSMUSG00000084045.1 ENSMUSG00000084045 ENSMUST00000118697 Gm11997 processed_pseudogene Interval_111088 chr4 11785310 11786197 + 0 NA intron (ENSMUSG00000028217.11, intron 9 of 14) protein_coding-intron (ENSMUSG00000028217.11, intron 9 of 17) 27560 ENSMUSG00000028217.11 ENSMUSG00000028217 ENSMUST00000108303 Cdh17 protein_coding Interval_67745 chr16 56799061 56801137 + 0 NA Intergenic Intergenic -4244 ENSMUSG00000022755.4 ENSMUSG00000022755 ENSMUST00000023437 Adgrg7 protein_coding Interval_79299 chr18 30252154 30253020 + 0 NA Intergenic Intergenic -14662 ENSMUSG00000117465.1 ENSMUSG00000117465 ENSMUST00000234467 Gm49980 lincRNA Interval_45852 chr13 58555992 58556188 + 0 NA intron (ENSMUSG00000021553.14, intron 1 of 3) protein_coding-intron (ENSMUSG00000021553.14, intron 17 of 17) 10062 ENSMUSG00000114234.1 ENSMUSG00000114234 ENSMUST00000223882 Gm3131 processed_pseudogene Interval_102751 chr3 30787759 30788873 + 0 NA Intergenic Intergenic 5248 ENSMUSG00000097786.3 ENSMUSG00000097786 ENSMUST00000180833 4933429H19Rik antisense Interval_88340 chr2 4142339 4142692 + 0 NA exon (ENSMUSG00000102816.1, exon 1 of 1) sense_intronic-exon (ENSMUSG00000102816.1, exon 1 of 1) -1374 ENSMUSG00000084859.7 ENSMUSG00000084859 ENSMUST00000154360 1700080N15Rik antisense Interval_1253 chr1 18278820 18279124 + 0 NA Intergenic Intergenic -13892 ENSMUSG00000067773.6 ENSMUSG00000067773 ENSMUST00000097817 Defb41 protein_coding Interval_143563 chr7 12849257 12851291 + 0 NA TTS (ENSMUSG00000058638.14) protein_coding-TTS (ENSMUSG00000058638.14) 14791 ENSMUSG00000058638.14 ENSMUSG00000058638 ENSMUST00000137718 Zfp110 protein_coding Interval_7164 chr1 127348424 127349047 + 0 NA intron (ENSMUSG00000036155.13, intron 4 of 10) protein_coding-intron (ENSMUSG00000036155.13, intron 4 of 17) 16922 ENSMUSG00000106489.1 ENSMUSG00000106489 ENSMUST00000197008 Gm23370 scaRNA Interval_140641 chr6 120267984 120268948 + 0 NA intron (ENSMUSG00000041372.10, intron 1 of 19) protein_coding-intron (ENSMUSG00000041372.10, intron 1 of 19) 26093 ENSMUSG00000041372.10 ENSMUSG00000041372 ENSMUST00000212457 B4galnt3 protein_coding Interval_114133 chr4 63971406 63972382 + 0 NA intron (ENSMUSG00000028364.15, intron 18 of 25) protein_coding-intron (ENSMUSG00000028364.15, intron 17 of 24) 75121 ENSMUSG00000028364.15 ENSMUSG00000028364 ENSMUST00000107371 Tnc protein_coding Interval_85717 chr19 30009976 30010460 + 0 NA Intergenic Intergenic 6428 ENSMUSG00000024815.5 ENSMUSG00000024815 ENSMUST00000025727 Trpd52l3 protein_coding Interval_155709 chr8 36346572 36347649 + 0 NA Intergenic Intergenic 26523 ENSMUSG00000098154.2 ENSMUSG00000098154 ENSMUST00000183049 Gm5787 processed_pseudogene Interval_107227 chr3 104761844 104762669 + 0 NA intron (ENSMUSG00000105195.1, intron 2 of 2) processed_transcript-intron (ENSMUSG00000105195.1, intron 2 of 2) -9091 ENSMUSG00000089999.1 ENSMUSG00000089999 ENSMUST00000160676 Gm6485 transcribed_processed_pseudogene Interval_99975 chr2 166202064 166202400 + 0 NA Intergenic Intergenic 6395 ENSMUSG00000085046.1 ENSMUSG00000085046 ENSMUST00000129407 Gm11467 lincRNA Interval_47850 chr13 93790178 93790384 + 0 NA promoter-TSS (ENSMUSG00000093480.1) miRNA-promoter-TSS (ENSMUSG00000093480.1) -496 ENSMUSG00000093480.1 ENSMUSG00000093480 ENSMUST00000176635 Mir5624 miRNA Interval_134960 chr6 34142836 34143125 + 0 NA Intergenic Intergenic -8949 ENSMUSG00000087356.1 ENSMUSG00000087356 ENSMUST00000126498 Gm13856 antisense Interval_107647 chr3 109323541 109324488 + 0 NA Intergenic Intergenic -131147 ENSMUSG00000083717.1 ENSMUSG00000083717 ENSMUST00000120957 Gm13865 processed_pseudogene Interval_128583 chr5 114151793 114153867 + 0 NA intron (ENSMUSG00000042010.16, intron 1 of 52) protein_coding-intron (ENSMUSG00000042010.16, intron 1 of 52) 20750 ENSMUSG00000029591.14 ENSMUSG00000029591 ENSMUST00000200479 Ung protein_coding Interval_18539 chr10 87180046 87180765 + 0 NA intron (ENSMUSG00000047129.11, intron 4 of 4) protein_coding-intron (ENSMUSG00000047129.11, intron 4 of 5) -25574 ENSMUSG00000047129.11 ENSMUSG00000047129 ENSMUST00000189775 1700113H08Rik protein_coding Interval_106316 chr3 95314706 95316086 + 0 NA promoter-TSS (ENSMUSG00000093424.3) antisense-promoter-TSS (ENSMUSG00000093424.3) -328 ENSMUSG00000093424.3 ENSMUSG00000093424 ENSMUST00000176569 6330562C20Rik antisense Interval_41130 chr12 111364104 111364513 + 0 NA intron (ENSMUSG00000021279.5, intron 2 of 4) protein_coding-intron (ENSMUSG00000021279.5, intron 1 of 36) -42501 ENSMUSG00000087075.2 ENSMUSG00000087075 ENSMUST00000150384 Lbhd2 protein_coding Interval_107703 chr3 111401765 111402279 + 0 NA Intergenic Intergenic -79165 ENSMUSG00000106100.1 ENSMUSG00000106100 ENSMUST00000199881 Gm9314 processed_pseudogene Interval_22627 chr11 12380694 12381530 + 0 NA intron (ENSMUSG00000020173.17, intron 2 of 14) protein_coding-intron (ENSMUSG00000020173.17, intron 2 of 14) 31032 ENSMUSG00000020173.17 ENSMUSG00000020173 ENSMUST00000146067 Cobl protein_coding Interval_25226 chr11 45574329 45574867 + 0 NA Intergenic Intergenic -64785 ENSMUSG00000077320.1 ENSMUSG00000077320 ENSMUST00000104132 Gm22284 snoRNA Interval_77635 chr17 93401219 93401485 + 0 NA Intergenic Intergenic -9654 ENSMUSG00000117368.1 ENSMUSG00000117368 ENSMUST00000234726 Gm50001 processed_pseudogene Interval_26003 chr11 53430455 53431568 + 0 NA promoter-TSS (ENSMUSG00000044894.14) protein_coding-promoter-TSS (ENSMUSG00000044894.14) -12 ENSMUSG00000018238.6 ENSMUSG00000018238 ENSMUST00000018382 Gdf9 protein_coding Interval_141662 chr6 132690876 132691236 + 0 NA Intergenic Intergenic 9951 ENSMUSG00000071150.1 ENSMUSG00000071150 ENSMUST00000095395 Tas2r121 protein_coding Interval_10747 chr1 174101623 174101881 + 0 NA exon (ENSMUSG00000059371.4, exon 2 of 2) protein_coding-exon (ENSMUSG00000059371.4, exon 2 of 2) 4861 ENSMUSG00000059371.4 ENSMUSG00000059371 ENSMUST00000080831 Olfr427 protein_coding Interval_6931 chr1 120963566 120964209 + 0 NA Intergenic Intergenic 94891 ENSMUSG00000102360.1 ENSMUSG00000102360 ENSMUST00000194609 Gm37043 TEC Interval_116341 chr4 109981343 109982869 + 0 NA exon (ENSMUSG00000047143.3, exon 3 of 3) protein_coding-exon (ENSMUSG00000047143.3, exon 3 of 3) 4053 ENSMUSG00000047143.3 ENSMUSG00000047143 ENSMUST00000061187 Dmrta2 protein_coding Interval_53506 chr14 57911800 57912559 + 0 NA Intergenic Intergenic 7753 ENSMUSG00000021973.9 ENSMUSG00000021973 ENSMUST00000225116 Micu2 protein_coding Interval_30558 chr11 95115451 95115790 + 0 NA Intergenic Intergenic -4499 ENSMUSG00000001510.8 ENSMUSG00000001510 ENSMUST00000092768 Dlx3 protein_coding Interval_26477 chr11 58075252 58075452 + 0 NA intron (ENSMUSG00000086962.4, intron 2 of 8) protein_coding-intron (ENSMUSG00000086962.4, intron 2 of 8) 17782 ENSMUSG00000086962.4 ENSMUSG00000086962 ENSMUST00000137124 Gm12248 protein_coding Interval_94028 chr2 81023358 81023833 + 0 NA Intergenic Intergenic -39406 ENSMUSG00000065261.1 ENSMUSG00000065261 ENSMUST00000083327 Gm23452 snRNA Interval_19173 chr10 95286828 95287820 + 0 NA intron (ENSMUSG00000045867.10, intron 2 of 2) protein_coding-intron (ENSMUSG00000045867.10, intron 2 of 2) 27529 ENSMUSG00000112744.1 ENSMUSG00000112744 ENSMUST00000219461 Gm48880 TEC Interval_113368 chr4 53864040 53865064 + 0 NA Intergenic Intergenic 3900 ENSMUSG00000065887.1 ENSMUSG00000065887 ENSMUST00000083953 n-R5s185 rRNA Interval_132602 chr5 146670493 146671111 + 0 NA Intergenic Intergenic -35820 ENSMUSG00000106020.1 ENSMUSG00000106020 ENSMUST00000197707 4930573C15Rik lincRNA Interval_10784 chr1 174677313 174677647 + 0 NA intron (ENSMUSG00000028354.13, intron 3 of 7) protein_coding-intron (ENSMUSG00000028354.13, intron 8 of 17) 67671 ENSMUSG00000028354.13 ENSMUSG00000028354 ENSMUST00000193905 Fmn2 protein_coding Interval_85183 chr19 23490981 23492253 + 0 NA Intergenic Intergenic -43175 ENSMUSG00000033207.7 ENSMUSG00000033207 ENSMUST00000236349 Mamdc2 protein_coding Interval_111387 chr4 20122175 20123698 + 0 NA intron (ENSMUSG00000055761.14, intron 5 of 5) protein_coding-intron (ENSMUSG00000055761.14, intron 5 of 5) 80884 ENSMUSG00000073987.4 ENSMUSG00000073987 ENSMUST00000098242 Ggh protein_coding Interval_45113 chr13 52352617 52352864 + 0 NA Intergenic Intergenic 172329 ENSMUSG00000113399.1 ENSMUSG00000113399 ENSMUST00000222876 Gm48199 lincRNA Interval_143847 chr7 16728663 16730129 + 0 NA Intergenic Intergenic 7438 ENSMUSG00000007209.4 ENSMUSG00000007209 ENSMUST00000206252 Ceacam9 protein_coding Interval_73255 chr17 35808188 35808635 + 0 NA Intergenic Intergenic -13273 ENSMUSG00000003541.6 ENSMUSG00000003541 ENSMUST00000003635 Ier3 protein_coding Interval_57739 chr15 17918774 17919723 + 0 NA Intergenic Intergenic -16330 ENSMUSG00000088133.1 ENSMUSG00000088133 ENSMUST00000157508 Gm22895 misc_RNA Interval_102161 chr3 18990941 18991356 + 0 NA Intergenic Intergenic 152751 ENSMUSG00000103135.1 ENSMUSG00000103135 ENSMUST00000193065 Gm37979 TEC Interval_6971 chr1 121462902 121463233 + 0 NA intron (ENSMUSG00000026339.18, intron 10 of 23) protein_coding-intron (ENSMUSG00000026339.18, intron 10 of 23) 30136 ENSMUSG00000085857.1 ENSMUSG00000085857 ENSMUST00000152863 Gm15392 antisense Interval_19958 chr10 111502892 111503311 + 0 NA Intergenic Intergenic 2317 ENSMUSG00000111997.1 ENSMUSG00000111997 ENSMUST00000220267 Gm5176 transcribed_processed_pseudogene Interval_24749 chr11 36620338 36620741 + 0 NA intron (ENSMUSG00000049336.16, intron 2 of 28) protein_coding-intron (ENSMUSG00000049336.16, intron 2 of 28) -102343 ENSMUSG00000065173.1 ENSMUSG00000065173 ENSMUST00000083239 Gm22127 snRNA Interval_157227 chr8 68232515 68233641 + 0 NA Intergenic Intergenic -21051 ENSMUSG00000030465.19 ENSMUSG00000030465 ENSMUST00000178529 Psd3 protein_coding Interval_174153 chrX 136741080 136742450 + 0 NA promoter-TSS (ENSMUSG00000031422.16) protein_coding-promoter-TSS (ENSMUSG00000031422.16) -93 ENSMUSG00000087368.7 ENSMUSG00000087368 ENSMUST00000145620 BC065397 processed_transcript Interval_63329 chr15 100353149 100353420 + 0 NA promoter-TSS (ENSMUSG00000056487.8) protein_coding-promoter-TSS (ENSMUSG00000056487.8) 84 ENSMUSG00000056487.8 ENSMUSG00000056487 ENSMUST00000176287 Mettl7a2 protein_coding Interval_24120 chr11 30498775 30499280 + 0 NA Intergenic Intergenic -27200 ENSMUSG00000040919.13 ENSMUSG00000040919 ENSMUST00000152718 4930505A04Rik protein_coding Interval_150863 chr7 115951673 115952539 + 0 NA intron (ENSMUSG00000051910.13, intron 1 of 11) protein_coding-intron (ENSMUSG00000051910.13, intron 1 of 16) -43168 ENSMUSG00000108489.1 ENSMUSG00000108489 ENSMUST00000206043 Gm45025 antisense Interval_7149 chr1 127234899 127235394 + 0 NA intron (ENSMUSG00000036155.13, intron 1 of 7) protein_coding-intron (ENSMUSG00000036155.13, intron 1 of 17) -6945 ENSMUSG00000104039.1 ENSMUSG00000104039 ENSMUST00000191635 Gm37772 TEC Interval_132698 chr5 147242122 147243226 + 0 NA intron (ENSMUSG00000092570.7, intron 1 of 5) antisense-intron (ENSMUSG00000092570.7, intron 1 of 3) -27285 ENSMUSG00000029644.7 ENSMUSG00000029644 ENSMUST00000085591 Pdx1 protein_coding Interval_71408 chr17 23575807 23576871 + 0 NA TTS (ENSMUSG00000062012.14) protein_coding-TTS (ENSMUSG00000062012.14) -2912 ENSMUSG00000115842.1 ENSMUSG00000115842 ENSMUST00000226550 Gm49092 lincRNA Interval_17688 chr10 79532867 79534383 + 0 NA exon (ENSMUSG00000052151.12, exon 1 of 6) protein_coding-exon (ENSMUSG00000052151.12, exon 1 of 6) 132 ENSMUSG00000052151.12 ENSMUSG00000052151 ENSMUST00000165233 Plpp2 protein_coding Interval_43573 chr13 33719911 33721009 + 0 NA intron (ENSMUSG00000097931.1, intron 3 of 3) unprocessed_pseudogene-intron (ENSMUSG00000097931.1, intron 3 of 3) 2184 ENSMUSG00000097931.1 ENSMUSG00000097931 ENSMUST00000181419 Gm11392 unprocessed_pseudogene Interval_30427 chr11 94298540 94298831 + 0 NA promoter-TSS (ENSMUSG00000020863.15) protein_coding-promoter-TSS (ENSMUSG00000020863.15) -467 ENSMUSG00000020863.15 ENSMUSG00000020863 ENSMUST00000165620 Luc7l3 protein_coding Interval_112718 chr4 44377468 44378656 + 0 NA Intergenic Intergenic -4860 ENSMUSG00000083803.1 ENSMUSG00000083803 ENSMUST00000121242 Gm12455 processed_pseudogene Interval_4957 chr1 82948513 82949356 + 0 NA Intergenic Intergenic -5546 ENSMUSG00000113084.1 ENSMUSG00000113084 ENSMUST00000222600 A030003K21Rik protein_coding Interval_153278 chr7 143172944 143173542 + 0 NA intron (ENSMUSG00000009545.14, intron 2 of 11) protein_coding-intron (ENSMUSG00000009545.14, intron 2 of 15) -32635 ENSMUSG00000101062.1 ENSMUSG00000101062 ENSMUST00000185637 Gm28821 antisense Interval_128049 chr5 110517782 110518864 + 0 NA intron (ENSMUSG00000048215.14, intron 1 of 2) lincRNA-intron (ENSMUSG00000048215.14, intron 1 of 2) 3379 ENSMUSG00000048215.14 ENSMUSG00000048215 ENSMUST00000129007 A630023P12Rik lincRNA Interval_57904 chr15 25290705 25291828 + 0 NA intron (ENSMUSG00000115355.1, intron 2 of 4) lincRNA-intron (ENSMUSG00000115355.1, intron 2 of 4) 41382 ENSMUSG00000115355.1 ENSMUSG00000115355 ENSMUST00000228450 4930445E18Rik lincRNA Interval_57807 chr15 21110636 21111566 + 0 NA promoter-TSS (ENSMUSG00000040452.9) protein_coding-promoter-TSS (ENSMUSG00000040452.9) 976 ENSMUSG00000040452.9 ENSMUSG00000040452 ENSMUST00000075132 Cdh12 protein_coding Interval_41421 chr12 113686922 113687107 + 0 NA promoter-TSS (ENSMUSG00000096498.3) IG_V_gene-promoter-TSS (ENSMUSG00000096498.3) 707 ENSMUSG00000103185.1 ENSMUSG00000103185 ENSMUST00000193354 Ighv5-11 IG_V_pseudogene Interval_20160 chr10 115334157 115334517 + 0 NA Intergenic Intergenic 18691 ENSMUSG00000112301.1 ENSMUSG00000112301 ENSMUST00000218348 Gm10752 TEC Interval_61102 chr15 79236630 79237166 + 0 NA intron (ENSMUSG00000068206.13, intron 3 of 4) protein_coding-intron (ENSMUSG00000068206.13, intron 3 of 12) 7507 ENSMUSG00000116121.1 ENSMUSG00000116121 ENSMUST00000053926 Gm49486 protein_coding Interval_151665 chr7 125820334 125820500 + 0 NA intron (ENSMUSG00000032743.15, intron 12 of 26) protein_coding-intron (ENSMUSG00000032743.15, intron 13 of 27) 112500 ENSMUSG00000032743.15 ENSMUSG00000032743 ENSMUST00000155059 D430042O09Rik protein_coding Interval_94445 chr2 91281156 91282053 + 0 NA TTS (ENSMUSG00000040591.18) protein_coding-TTS (ENSMUSG00000040591.18) 16270 ENSMUSG00000027255.14 ENSMUSG00000027255 ENSMUST00000127895 Arfgap2 protein_coding Interval_131080 chr5 134965610 134967735 + 0 NA Intergenic Intergenic -19542 ENSMUSG00000070473.4 ENSMUSG00000070473 ENSMUST00000094245 Cldn3 protein_coding Interval_147652 chr7 70683918 70684804 + 0 NA Intergenic Intergenic 45751 ENSMUSG00000109294.1 ENSMUSG00000109294 ENSMUST00000208887 Gm44808 lincRNA Interval_90954 chr2 33689449 33690782 + 0 NA Intergenic Intergenic 28784 ENSMUSG00000085463.1 ENSMUSG00000085463 ENSMUST00000130532 9430024E24Rik lincRNA Interval_37533 chr12 69647807 69648227 + 0 NA intron (ENSMUSG00000034801.13, intron 4 of 22) protein_coding-intron (ENSMUSG00000034801.13, intron 4 of 22) -30898 ENSMUSG00000034801.13 ENSMUSG00000034801 ENSMUST00000183306 Sos2 protein_coding Interval_100679 chr2 171279129 171280949 + 0 NA Intergenic Intergenic 26392 ENSMUSG00000088505.1 ENSMUSG00000088505 ENSMUST00000157880 Gm26489 scaRNA Interval_91049 chr2 34681160 34681659 + 0 NA intron (ENSMUSG00000026867.18, intron 2 of 3) protein_coding-intron (ENSMUSG00000026867.18, intron 24 of 25) 19690 ENSMUSG00000026867.18 ENSMUSG00000026867 ENSMUST00000142436 Gapvd1 protein_coding Interval_154734 chr8 22927585 22928896 + 0 NA intron (ENSMUSG00000031540.14, intron 13 of 17) protein_coding-intron (ENSMUSG00000031540.14, intron 13 of 17) 30201 ENSMUSG00000109793.1 ENSMUSG00000109793 ENSMUST00000210691 Gm10043 processed_pseudogene Interval_23178 chr11 20361481 20362085 + 0 NA Intergenic Intergenic -25770 ENSMUSG00000078965.5 ENSMUSG00000078965 ENSMUST00000180654 Gm12033 processed_pseudogene Interval_154416 chr8 15955492 15956239 + 0 NA intron (ENSMUSG00000060924.15, intron 2 of 20) protein_coding-intron (ENSMUSG00000060924.15, intron 50 of 69) 78201 ENSMUSG00000109757.1 ENSMUSG00000109757 ENSMUST00000211639 Gm7128 processed_pseudogene Interval_164977 chr9 43579792 43581054 + 0 NA Intergenic Intergenic -27761 ENSMUSG00000110988.1 ENSMUSG00000110988 ENSMUST00000214500 Gm29909 lincRNA Interval_77476 chr17 89526776 89527273 + 0 NA Intergenic Intergenic 147783 ENSMUSG00000117524.1 ENSMUSG00000117524 ENSMUST00000234513 Gm4719 lincRNA Interval_30133 chr11 89574239 89574662 + 0 NA intron (ENSMUSG00000047773.15, intron 4 of 21) protein_coding-intron (ENSMUSG00000047773.15, intron 2 of 16) 266816 ENSMUSG00000047773.15 ENSMUSG00000047773 ENSMUST00000207171 Ankfn1 protein_coding Interval_79308 chr18 30334280 30336104 + 0 NA intron (ENSMUSG00000033628.15, intron 22 of 24) protein_coding-intron (ENSMUSG00000033628.15, intron 22 of 23) 62265 ENSMUSG00000033628.15 ENSMUSG00000033628 ENSMUST00000131405 Pik3c3 protein_coding Interval_59493 chr15 54450325 54450853 + 0 NA intron (ENSMUSG00000038591.3, intron 3 of 5) protein_coding-intron (ENSMUSG00000038591.3, intron 3 of 5) 8691 ENSMUSG00000115211.1 ENSMUSG00000115211 ENSMUST00000227121 Gm18152 processed_pseudogene Interval_139559 chr6 101049230 101049536 + 0 NA intron (ENSMUSG00000107887.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000107887.1, intron 1 of 2) -9788 ENSMUSG00000107427.1 ENSMUSG00000107427 ENSMUST00000203474 Gm43948 antisense Interval_167183 chr9 65992773 65993226 + 0 NA intron (ENSMUSG00000032384.16, intron 3 of 4) protein_coding-intron (ENSMUSG00000032384.16, intron 5 of 13) 34583 ENSMUSG00000032384.16 ENSMUSG00000032384 ENSMUST00000205489 Csnk1g1 protein_coding Interval_80030 chr18 36744107 36745123 + 0 NA promoter-TSS (ENSMUSG00000024474.7) protein_coding-promoter-TSS (ENSMUSG00000024474.7) -58 ENSMUSG00000014294.4 ENSMUSG00000014294 ENSMUST00000014438 Ndufa2 protein_coding Interval_93548 chr2 74036002 74036679 + 0 NA Intergenic Intergenic 66002 ENSMUSG00000085387.1 ENSMUSG00000085387 ENSMUST00000151443 A630050E04Rik lincRNA Interval_21908 chr11 5135538 5136085 + 0 NA intron (ENSMUSG00000034164.17, intron 3 of 14) protein_coding-intron (ENSMUSG00000034164.17, intron 3 of 14) 16429 ENSMUSG00000034164.17 ENSMUSG00000034164 ENSMUST00000138551 Emid1 protein_coding Interval_161615 chr8 121585000 121586020 + 0 NA intron (ENSMUSG00000092329.1, intron 1 of 15) protein_coding-intron (ENSMUSG00000092329.1, intron 1 of 15) 3745 ENSMUSG00000097987.1 ENSMUSG00000097987 ENSMUST00000182000 Gm17786 processed_pseudogene Interval_40774 chr12 108287185 108287952 + 0 NA Intergenic Intergenic -12143 ENSMUSG00000084883.2 ENSMUSG00000084883 ENSMUST00000136175 Ccdc85c protein_coding Interval_111403 chr4 20826651 20828146 + 0 NA Intergenic Intergenic -48831 ENSMUSG00000055761.14 ENSMUSG00000055761 ENSMUST00000102998 Nkain3 protein_coding Interval_165966 chr9 55043707 55044600 + 0 NA intron (ENSMUSG00000035200.7, intron 1 of 5) protein_coding-intron (ENSMUSG00000035200.7, intron 1 of 5) 4626 ENSMUSG00000035200.7 ENSMUSG00000035200 ENSMUST00000034854 Chrnb4 protein_coding Interval_19335 chr10 97035000 97035895 + 0 NA promoter-TSS (ENSMUSG00000111924.1) lincRNA-promoter-TSS (ENSMUSG00000111924.1) -321 ENSMUSG00000111924.1 ENSMUSG00000111924 ENSMUST00000219048 4930556N09Rik lincRNA Interval_101521 chr3 3672353 3673472 + 0 NA Intergenic Intergenic 38762 ENSMUSG00000017688.14 ENSMUSG00000017688 ENSMUST00000108394 Hnf4g protein_coding Interval_112471 chr4 41445587 41446243 + 0 NA intron (ENSMUSG00000028438.16, intron 1 of 2) protein_coding-intron (ENSMUSG00000028438.16, intron 1 of 9) 18931 ENSMUSG00000028438.16 ENSMUSG00000028438 ENSMUST00000131532 Kif24 protein_coding Interval_68974 chr16 89863077 89863727 + 0 NA intron (ENSMUSG00000002489.16, intron 8 of 27) protein_coding-intron (ENSMUSG00000002489.16, intron 8 of 27) -68120 ENSMUSG00000002489.16 ENSMUSG00000002489 ENSMUST00000136760 Tiam1 protein_coding Interval_90274 chr2 29483546 29483764 + 0 NA intron (ENSMUSG00000026799.15, intron 4 of 4) protein_coding-intron (ENSMUSG00000026799.15, intron 4 of 7) -8361 ENSMUSG00000098539.1 ENSMUSG00000098539 ENSMUST00000184068 Mir133c miRNA Interval_141444 chr6 128314820 128316048 + 0 NA Intergenic Intergenic 2077 ENSMUSG00000053173.12 ENSMUSG00000053173 ENSMUST00000118863 Rpl18-ps2 processed_pseudogene Interval_70090 chr17 5252544 5252915 + 0 NA intron (ENSMUSG00000069729.14, intron 5 of 18) protein_coding-intron (ENSMUSG00000069729.14, intron 5 of 18) -136034 ENSMUSG00000101133.1 ENSMUSG00000101133 ENSMUST00000190732 Gm29050 antisense Interval_89223 chr2 18183592 18183870 + 0 NA intron (ENSMUSG00000026743.16, intron 2 of 3) protein_coding-intron (ENSMUSG00000026743.16, intron 13 of 22) -4289 ENSMUSG00000081619.1 ENSMUSG00000081619 ENSMUST00000118087 Gm13351 processed_pseudogene Interval_136265 chr6 52414700 52415779 + 0 NA Intergenic Intergenic -57415 ENSMUSG00000084282.1 ENSMUSG00000084282 ENSMUST00000117393 Gm15054 processed_pseudogene Interval_74605 chr17 53672910 53673123 + 0 NA TTS (ENSMUSG00000000708.14) protein_coding-TTS (ENSMUSG00000000708.14) 13705 ENSMUSG00000000708.14 ENSMUSG00000000708 ENSMUST00000171072 Kat2b protein_coding Interval_19543 chr10 102876253 102876534 + 0 NA Intergenic Intergenic 57022 ENSMUSG00000112046.1 ENSMUSG00000112046 ENSMUST00000219699 Gm5175 transcribed_processed_pseudogene Interval_140105 chr6 114250075 114251150 + 0 NA TTS (ENSMUSG00000030307.8) protein_coding-TTS (ENSMUSG00000030307.8) -32178 ENSMUSG00000030310.10 ENSMUSG00000030310 ENSMUST00000204540 Slc6a1 protein_coding Interval_111077 chr4 11682555 11683535 + 0 NA Intergenic Intergenic -21412 ENSMUSG00000028214.13 ENSMUSG00000028214 ENSMUST00000029868 Gem protein_coding Interval_105034 chr3 79926677 79926901 + 0 NA intron (ENSMUSG00000027955.16, intron 2 of 2) protein_coding-intron (ENSMUSG00000027955.16, intron 2 of 3) -39983 ENSMUSG00000102191.1 ENSMUSG00000102191 ENSMUST00000195082 Gm36569 antisense Interval_22943 chr11 17727523 17728194 + 0 NA Intergenic Intergenic -88675 ENSMUSG00000082411.1 ENSMUSG00000082411 ENSMUST00000119079 Gm12016 processed_pseudogene Interval_30707 chr11 96031824 96032027 + 0 NA promoter-TSS (ENSMUSG00000098425.1) snoRNA-promoter-TSS (ENSMUSG00000098425.1) -753 ENSMUSG00000098425.1 ENSMUSG00000098425 ENSMUST00000183609 Gm24949 snoRNA Interval_8432 chr1 139267989 139268475 + 0 NA intron (ENSMUSG00000063681.14, intron 4 of 9) protein_coding-intron (ENSMUSG00000063681.14, intron 5 of 11) 60016 ENSMUSG00000063681.14 ENSMUSG00000063681 ENSMUST00000197035 Crb1 protein_coding Interval_166075 chr9 56417266 56419047 + 0 NA promoter-TSS (ENSMUSG00000032329.4) protein_coding-promoter-TSS (ENSMUSG00000032329.4) -668 ENSMUSG00000032329.4 ENSMUSG00000032329 ENSMUST00000214869 Hmg20a protein_coding Interval_2888 chr1 47914134 47915006 + 0 NA TTS (ENSMUSG00000101996.1) processed_pseudogene-TTS (ENSMUSG00000101996.1) 1245 ENSMUSG00000101996.1 ENSMUSG00000101996 ENSMUST00000186401 Gm19206 processed_pseudogene Interval_57208 chr15 7782851 7783090 + 0 NA Intergenic Intergenic 3934 ENSMUSG00000115765.1 ENSMUSG00000115765 ENSMUST00000228138 Gm19227 processed_pseudogene Interval_46299 chr13 63528019 63529227 + 0 NA intron (ENSMUSG00000021466.12, intron 13 of 21) protein_coding-intron (ENSMUSG00000021466.12, intron 15 of 22) 11055 ENSMUSG00000021466.12 ENSMUSG00000021466 ENSMUST00000220588 Ptch1 protein_coding Interval_105291 chr3 84630333 84630789 + 0 NA intron (ENSMUSG00000102805.5, intron 3 of 9) protein_coding-intron (ENSMUSG00000102805.5, intron 3 of 9) -35649 ENSMUSG00000056498.13 ENSMUSG00000056498 ENSMUST00000128344 Tmem154 protein_coding Interval_171118 chr9 114626202 114626979 + 0 NA intron (ENSMUSG00000056167.8, intron 5 of 14) protein_coding-intron (ENSMUSG00000056167.8, intron 5 of 19) 13591 ENSMUSG00000056167.8 ENSMUSG00000056167 ENSMUST00000238809 Cnot10 protein_coding Interval_135706 chr6 43754905 43755243 + 0 NA Intergenic Intergenic 12236 ENSMUSG00000107465.1 ENSMUSG00000107465 ENSMUST00000203126 Gm5990 processed_pseudogene Interval_125533 chr5 69297271 69297459 + 0 NA intron (ENSMUSG00000037653.7, intron 1 of 1) protein_coding-intron (ENSMUSG00000037653.7, intron 1 of 1) 18702 ENSMUSG00000107148.1 ENSMUSG00000107148 ENSMUST00000202425 Gm42888 TEC Interval_84260 chr19 9066031 9066560 + 0 NA intron (ENSMUSG00000069833.13, intron 5 of 5) protein_coding-intron (ENSMUSG00000069833.13, intron 5 of 5) 21663 ENSMUSG00000024653.2 ENSMUSG00000024653 ENSMUST00000025554 Scgb1a1 protein_coding Interval_145743 chr7 37983340 37983960 + 0 NA intron (ENSMUSG00000030421.9, intron 2 of 10) protein_coding-intron (ENSMUSG00000030421.9, intron 2 of 10) 39901 ENSMUSG00000030421.9 ENSMUSG00000030421 ENSMUST00000206169 Uri1 protein_coding Interval_40787 chr12 108422601 108423760 + 0 NA exon (ENSMUSG00000058070.14, exon 1 of 22) protein_coding-exon (ENSMUSG00000058070.14, exon 1 of 22) 18090 ENSMUSG00000082203.1 ENSMUSG00000082203 ENSMUST00000119205 Gm15636 processed_pseudogene Interval_11951 chr1 187578405 187578734 + 0 NA Intergenic Intergenic -31127 ENSMUSG00000026610.13 ENSMUSG00000026610 ENSMUST00000110938 Esrrg protein_coding Interval_136008 chr6 49473542 49473743 + 0 NA Intergenic Intergenic -48758 ENSMUSG00000090624.1 ENSMUSG00000090624 ENSMUST00000172394 Gm17060 processed_pseudogene Interval_124688 chr5 53298482 53299112 + 0 NA Intergenic Intergenic 16987 ENSMUSG00000106981.1 ENSMUSG00000106981 ENSMUST00000200940 Gm45495 lincRNA Interval_168682 chr9 85788404 85789305 + 0 NA TTS (ENSMUSG00000100019.1) processed_pseudogene-TTS (ENSMUSG00000100019.1) 1717 ENSMUSG00000100019.1 ENSMUSG00000100019 ENSMUST00000189811 Gm18766 processed_pseudogene Interval_163280 chr9 20520195 20522214 + 0 NA promoter-TSS (ENSMUSG00000060510.14) protein_coding-promoter-TSS (ENSMUSG00000060510.14) 213 ENSMUSG00000060510.14 ENSMUSG00000060510 ENSMUST00000213275 Zfp266 protein_coding Interval_173982 chrX 121956037 121956462 + 0 NA Intergenic Intergenic 41689 ENSMUSG00000088264.1 ENSMUSG00000088264 ENSMUST00000157639 Gm24783 snRNA Interval_3881 chr1 64301403 64301989 + 0 NA intron (ENSMUSG00000101895.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000101895.1, intron 1 of 1) 1347 ENSMUSG00000101895.1 ENSMUSG00000101895 ENSMUST00000190863 Gm28981 lincRNA Interval_157875 chr8 75131376 75133418 + 0 NA Intergenic Intergenic 22773 ENSMUSG00000005410.6 ENSMUSG00000005410 ENSMUST00000211912 Mcm5 protein_coding Interval_97313 chr2 133613353 133613693 + 0 NA Intergenic Intergenic -29102 ENSMUSG00000064983.1 ENSMUSG00000064983 ENSMUST00000083049 Gm25258 snRNA Interval_108182 chr3 122265973 122266527 + 0 NA TTS (ENSMUSG00000028124.15) protein_coding-TTS (ENSMUSG00000028124.15) 9522 ENSMUSG00000093392.1 ENSMUSG00000093392 ENSMUST00000175860 Gm6061 transcribed_processed_pseudogene Interval_57173 chr15 7140483 7141395 + 0 NA intron (ENSMUSG00000054263.12, intron 1 of 15) protein_coding-intron (ENSMUSG00000054263.12, intron 1 of 19) 50325 ENSMUSG00000054263.12 ENSMUSG00000054263 ENSMUST00000171588 Lifr protein_coding Interval_137565 chr6 73268401 73268930 + 0 NA intron (ENSMUSG00000052738.14, intron 5 of 8) protein_coding-intron (ENSMUSG00000052738.14, intron 5 of 8) 20005 ENSMUSG00000052738.14 ENSMUSG00000052738 ENSMUST00000173409 Suclg1 protein_coding Interval_11294 chr1 180800214 180800664 + 0 NA TTS (ENSMUSG00000060743.12) protein_coding-TTS (ENSMUSG00000060743.12) -13337 ENSMUSG00000073485.3 ENSMUSG00000073485 ENSMUST00000097448 H3f3aos antisense Interval_108272 chr3 123194698 123195229 + 0 NA intron (ENSMUSG00000050315.14, intron 1 of 1) protein_coding-intron (ENSMUSG00000050315.14, intron 1 of 4) -2201 ENSMUSG00000106220.1 ENSMUSG00000106220 ENSMUST00000197594 Gm43288 TEC Interval_60531 chr15 74667586 74667911 + 0 NA Intergenic Intergenic 4822 ENSMUSG00000022602.14 ENSMUSG00000022602 ENSMUST00000110009 Arc protein_coding Interval_46201 chr13 62459182 62459405 + 0 NA intron (ENSMUSG00000055228.8, intron 1 of 2) protein_coding-intron (ENSMUSG00000055228.8, intron 1 of 2) 7513 ENSMUSG00000113450.1 ENSMUSG00000113450 ENSMUST00000221951 Gm49359 protein_coding Interval_34499 chr12 4686303 4686605 + 0 NA intron (ENSMUSG00000020640.10, intron 29 of 39) protein_coding-intron (ENSMUSG00000020640.10, intron 28 of 38) 3472 ENSMUSG00000091732.1 ENSMUSG00000091732 ENSMUST00000080062 Gm17541 processed_pseudogene Interval_60892 chr15 77631477 77632255 + 0 NA Intergenic Intergenic 10032 ENSMUSG00000095704.2 ENSMUSG00000095704 ENSMUST00000178052 Gm8221 unprocessed_pseudogene Interval_126655 chr5 91784137 91784391 + 0 NA Intergenic Intergenic 2618 ENSMUSG00000106712.1 ENSMUSG00000106712 ENSMUST00000201126 Gm19649 TEC Interval_65755 chr16 27275055 27275298 + 0 NA Intergenic Intergenic -32313 ENSMUSG00000052276.8 ENSMUSG00000052276 ENSMUST00000066852 Ostn protein_coding Interval_105449 chr3 86677532 86678370 + 0 NA intron (ENSMUSG00000028080.16, intron 8 of 17) protein_coding-intron (ENSMUSG00000028080.16, intron 47 of 56) -5783 ENSMUSG00000094392.1 ENSMUSG00000094392 ENSMUST00000119949 Gm3788 processed_pseudogene Interval_56582 chr14 120493416 120494205 + 0 NA intron (ENSMUSG00000051615.14, intron 1 of 1) protein_coding-intron (ENSMUSG00000051615.14, intron 1 of 1) 15366 ENSMUSG00000051615.14 ENSMUSG00000051615 ENSMUST00000062117 Rap2a protein_coding Interval_148429 chr7 81198369 81198821 + 0 NA Intergenic Intergenic -6415 ENSMUSG00000109323.1 ENSMUSG00000109323 ENSMUST00000207652 Gm44968 lincRNA Interval_15244 chr10 43686425 43688089 + 0 NA promoter-TSS (ENSMUSG00000111749.1) lincRNA-promoter-TSS (ENSMUSG00000111749.1) 45 ENSMUSG00000111749.1 ENSMUSG00000111749 ENSMUST00000217559 Gm47927 lincRNA Interval_71967 chr17 27299834 27300225 + 0 NA Intergenic Intergenic 17066 ENSMUSG00000105142.1 ENSMUSG00000105142 ENSMUST00000198396 Mir7214 miRNA Interval_80727 chr18 46611097 46613532 + 0 NA intron (ENSMUSG00000057561.10, intron 3 of 4) protein_coding-intron (ENSMUSG00000057561.10, intron 3 of 4) 14613 ENSMUSG00000057561.10 ENSMUSG00000057561 ENSMUST00000236497 Eif1a protein_coding Interval_91850 chr2 50284035 50284397 + 0 NA intron (ENSMUSG00000026766.16, intron 5 of 5) protein_coding-intron (ENSMUSG00000026766.16, intron 6 of 7) 12207 ENSMUSG00000026766.16 ENSMUSG00000026766 ENSMUST00000133768 Mmadhc protein_coding Interval_167135 chr9 65579651 65581284 + 0 NA promoter-TSS (ENSMUSG00000050721.9) protein_coding-promoter-TSS (ENSMUSG00000050721.9) -1433 ENSMUSG00000050721.9 ENSMUSG00000050721 ENSMUST00000213652 Plekho2 protein_coding Interval_94399 chr2 90751306 90751567 + 0 NA exon (ENSMUSG00000008200.15, exon 4 of 17) protein_coding-exon (ENSMUSG00000008200.15, exon 4 of 17) -3473 ENSMUSG00000080873.3 ENSMUSG00000080873 ENSMUST00000117928 Rpl30-ps3 processed_pseudogene Interval_89328 chr2 19380372 19381653 + 0 NA intron (ENSMUSG00000023094.14, intron 2 of 2) protein_coding-intron (ENSMUSG00000023094.14, intron 2 of 4) 9171 ENSMUSG00000023094.14 ENSMUSG00000023094 ENSMUST00000153289 Msrb2 protein_coding Interval_41947 chr13 5098197 5099037 + 0 NA Intergenic Intergenic 91317 ENSMUSG00000077473.1 ENSMUSG00000077473 ENSMUST00000104285 Gm24790 snoRNA Interval_36369 chr12 42348549 42348737 + 0 NA Intergenic Intergenic 66927 ENSMUSG00000093214.1 ENSMUSG00000093214 ENSMUST00000175473 Gm25248 miRNA Interval_27277 chr11 65193092 65193496 + 0 NA intron (ENSMUSG00000020542.18, intron 9 of 13) protein_coding-intron (ENSMUSG00000020542.18, intron 5 of 9) -11137 ENSMUSG00000020542.18 ENSMUSG00000020542 ENSMUST00000150823 Myocd protein_coding Interval_113036 chr4 47123896 47124688 + 0 NA Intergenic Intergenic 23260 ENSMUSG00000094286.1 ENSMUSG00000094286 ENSMUST00000179673 Gm12424 processed_pseudogene Interval_7462 chr1 131554925 131555914 + 0 NA Intergenic Intergenic 27516 ENSMUSG00000055184.4 ENSMUSG00000055184 ENSMUST00000068613 Fam72a protein_coding Interval_1506 chr1 24369822 24370533 + 0 NA intron (ENSMUSG00000026141.13, intron 5 of 39) protein_coding-intron (ENSMUSG00000026141.13, intron 16 of 47) 82568 ENSMUSG00000026141.13 ENSMUSG00000026141 ENSMUST00000051344 Col19a1 protein_coding Interval_58986 chr15 41352048 41352593 + 0 NA Intergenic Intergenic -109162 ENSMUSG00000116178.1 ENSMUSG00000116178 ENSMUST00000229823 Gm49529 processed_pseudogene Interval_22985 chr11 18478292 18479707 + 0 NA intron (ENSMUSG00000085675.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000085675.1, intron 1 of 1) 14256 ENSMUSG00000085675.1 ENSMUSG00000085675 ENSMUST00000143311 Gm12022 lincRNA Interval_102977 chr3 33957842 33958095 + 0 NA TTS (ENSMUSG00000106584.1) TEC-TTS (ENSMUSG00000106584.1) 1232 ENSMUSG00000077559.1 ENSMUSG00000077559 ENSMUST00000104371 Gm23175 snoRNA Interval_66292 chr16 32935430 32935669 + 0 NA intron (ENSMUSG00000022801.13, intron 1 of 17) protein_coding-intron (ENSMUSG00000022801.13, intron 1 of 20) 12331 ENSMUSG00000091997.1 ENSMUSG00000091997 ENSMUST00000163830 Gm6611 processed_pseudogene Interval_31052 chr11 97889688 97890221 + 0 NA intron (ENSMUSG00000086917.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000086917.1, intron 1 of 1) 5360 ENSMUSG00000086917.1 ENSMUSG00000086917 ENSMUST00000152825 Gm11630 lincRNA Interval_87051 chr19 45811971 45814148 + 0 NA promoter-TSS (ENSMUSG00000025221.16) protein_coding-promoter-TSS (ENSMUSG00000025221.16) -9485 ENSMUSG00000025221.16 ENSMUSG00000025221 ENSMUST00000159446 Kcnip2 protein_coding Interval_111314 chr4 18527065 18527822 + 0 NA intron (ENSMUSG00000087402.1, intron 2 of 10) processed_transcript-intron (ENSMUSG00000087402.1, intron 2 of 10) 55254 ENSMUSG00000083660.1 ENSMUSG00000083660 ENSMUST00000119687 Gm11853 processed_pseudogene Interval_78296 chr18 11791946 11792724 + 0 NA Intergenic Intergenic -39780 ENSMUSG00000117589.1 ENSMUSG00000117589 ENSMUST00000234203 Gm18713 processed_pseudogene Interval_87386 chr19 48237959 48239163 + 0 NA intron (ENSMUSG00000063434.6, intron 1 of 26) protein_coding-intron (ENSMUSG00000063434.6, intron 1 of 26) 2084 ENSMUSG00000089004.1 ENSMUSG00000089004 ENSMUST00000158379 Gm23857 rRNA Interval_26602 chr11 59141500 59142363 + 0 NA Intergenic Intergenic -5556 ENSMUSG00000061462.18 ENSMUSG00000061462 ENSMUST00000133040 Obscn protein_coding Interval_53976 chr14 64006736 64007065 + 0 NA intron (ENSMUSG00000046049.7, intron 1 of 3) protein_coding-intron (ENSMUSG00000046049.7, intron 1 of 3) -19397 ENSMUSG00000021961.6 ENSMUSG00000021961 ENSMUST00000225544 4930578I06Rik protein_coding Interval_4660 chr1 75781348 75781878 + 0 NA Intergenic Intergenic 145223 ENSMUSG00000082012.1 ENSMUSG00000082012 ENSMUST00000121823 Gm5257 processed_pseudogene Interval_139646 chr6 105230447 105230846 + 0 NA Intergenic Intergenic -1959 ENSMUSG00000089587.1 ENSMUSG00000089587 ENSMUST00000158962 Gm23339 snoRNA Interval_160144 chr8 106691903 106692498 + 0 NA intron (ENSMUSG00000041949.6, intron 2 of 13) protein_coding-intron (ENSMUSG00000041949.6, intron 2 of 17) 9085 ENSMUSG00000041949.6 ENSMUSG00000041949 ENSMUST00000211979 Tango6 protein_coding Interval_126936 chr5 97553272 97553786 + 0 NA intron (ENSMUSG00000097516.7, intron 4 of 4) lincRNA-intron (ENSMUSG00000097516.7, intron 2 of 3) -96508 ENSMUSG00000050553.3 ENSMUSG00000050553 ENSMUST00000059657 Gk2 protein_coding Interval_95098 chr2 103848858 103850388 + 0 NA Intergenic Intergenic -5967 ENSMUSG00000082845.1 ENSMUSG00000082845 ENSMUST00000118308 Gm13879 processed_pseudogene Interval_151914 chr7 127511351 127513338 + 0 NA promoter-TSS (ENSMUSG00000053877.12) protein_coding-promoter-TSS (ENSMUSG00000053877.12) 525 ENSMUSG00000101225.1 ENSMUSG00000101225 ENSMUST00000185351 1700008J07Rik antisense Interval_33747 chr11 118253935 118254896 + 0 NA Intergenic Intergenic 35657 ENSMUSG00000033909.17 ENSMUSG00000033909 ENSMUST00000151433 Usp36 protein_coding Interval_35136 chr12 17512984 17513289 + 0 NA Intergenic Intergenic -31836 ENSMUSG00000011179.8 ENSMUSG00000011179 ENSMUST00000222250 Odc1 protein_coding Interval_16906 chr10 69707187 69707525 + 0 NA exon (ENSMUSG00000069601.14, exon 1 of 1) protein_coding-exon (ENSMUSG00000069601.14, exon 1 of 1) -140995 ENSMUSG00000112729.1 ENSMUSG00000112729 ENSMUST00000220152 Gm46231 processed_pseudogene Interval_97498 chr2 137853622 137854142 + 0 NA Intergenic Intergenic 22949 ENSMUSG00000086214.1 ENSMUSG00000086214 ENSMUST00000134795 Gm14062 lincRNA Interval_18751 chr10 89975458 89976095 + 0 NA intron (ENSMUSG00000058589.14, intron 1 of 16) protein_coding-intron (ENSMUSG00000058589.14, intron 1 of 17) 102267 ENSMUSG00000058589.14 ENSMUSG00000058589 ENSMUST00000183024 Anks1b protein_coding Interval_61115 chr15 79327196 79328659 + 0 NA promoter-TSS (ENSMUSG00000042632.17) protein_coding-promoter-TSS (ENSMUSG00000042632.17) 13731 ENSMUSG00000092494.2 ENSMUSG00000092494 ENSMUST00000173178 Gm20420 antisense Interval_89118 chr2 16741464 16741928 + 0 NA intron (ENSMUSG00000026748.13, intron 8 of 8) protein_coding-intron (ENSMUSG00000026748.13, intron 13 of 13) 103000 ENSMUSG00000026748.13 ENSMUSG00000026748 ENSMUST00000126173 Plxdc2 protein_coding Interval_53638 chr14 60485131 60486912 + 0 NA intron (ENSMUSG00000101797.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000101797.1, intron 1 of 2) 813 ENSMUSG00000101797.1 ENSMUSG00000101797 ENSMUST00000190392 Gm29266 lincRNA Interval_158530 chr8 84285643 84286212 + 0 NA Intergenic Intergenic 17806 ENSMUSG00000109653.1 ENSMUSG00000109653 ENSMUST00000210948 Gm45608 processed_pseudogene Interval_86701 chr19 42757641 42758664 + 0 NA promoter-TSS (ENSMUSG00000025188.15) protein_coding-promoter-TSS (ENSMUSG00000025188.15) -5377 ENSMUSG00000060224.4 ENSMUSG00000060224 ENSMUST00000238158 Pyroxd2 protein_coding Interval_132790 chr5 147897956 147899525 + 0 NA Intergenic Intergenic -18871 ENSMUSG00000029650.10 ENSMUSG00000029650 ENSMUST00000138244 Slc46a3 protein_coding Interval_24878 chr11 40707924 40708362 + 0 NA exon (ENSMUSG00000020330.16, exon 13 of 18) protein_coding-exon (ENSMUSG00000020330.16, exon 13 of 18) -22326 ENSMUSG00000042032.13 ENSMUSG00000042032 ENSMUST00000135617 Mat2b protein_coding Interval_21533 chr10 129302616 129302851 + 0 NA TTS (ENSMUSG00000077280.1) snoRNA-TTS (ENSMUSG00000077280.1) 642 ENSMUSG00000077280.1 ENSMUSG00000077280 ENSMUST00000104092 Gm25764 snoRNA Interval_166186 chr9 57321011 57321644 + 0 NA Intergenic Intergenic 8088 ENSMUSG00000111457.1 ENSMUSG00000111457 ENSMUST00000214851 Gm18996 processed_pseudogene Interval_59340 chr15 51782447 51783011 + 0 NA Intergenic Intergenic 53528 ENSMUSG00000022312.11 ENSMUSG00000022312 ENSMUST00000228583 Eif3h protein_coding Interval_11632 chr1 183507164 183507336 + 0 NA Intergenic Intergenic -56262 ENSMUSG00000103451.1 ENSMUSG00000103451 ENSMUST00000195148 Gm33973 lincRNA Interval_2578 chr1 40790052 40791088 + 0 NA promoter-TSS (ENSMUSG00000041945.12) protein_coding-promoter-TSS (ENSMUSG00000041945.12) 87 ENSMUSG00000041945.12 ENSMUSG00000041945 ENSMUST00000144385 Mfsd9 protein_coding Interval_18244 chr10 84226000 84226178 + 0 NA Intergenic Intergenic -4032 ENSMUSG00000111062.1 ENSMUSG00000111062 ENSMUST00000216890 Gm47253 lincRNA Interval_62382 chr15 91374244 91374645 + 0 NA intron (ENSMUSG00000036298.10, intron 4 of 9) protein_coding-intron (ENSMUSG00000036298.10, intron 4 of 9) 37773 ENSMUSG00000036298.10 ENSMUSG00000036298 ENSMUST00000109282 Slc2a13 protein_coding Interval_152910 chr7 139661167 139661385 + 0 NA promoter-TSS (ENSMUSG00000049571.18) protein_coding-promoter-TSS (ENSMUSG00000049571.18) -1121 ENSMUSG00000083626.1 ENSMUSG00000083626 ENSMUST00000118750 Gm4459 processed_pseudogene Interval_46090 chr13 61584638 61586084 + 0 NA Intergenic Intergenic -17187 ENSMUSG00000114904.1 ENSMUSG00000114904 ENSMUST00000225902 Gm49352 protein_coding Interval_162057 chr8 124784603 124786684 + 0 NA Intergenic Intergenic 3910 ENSMUSG00000110550.1 ENSMUSG00000110550 ENSMUST00000212752 Gm45856 processed_pseudogene Interval_29102 chr11 80351302 80352264 + 0 NA intron (ENSMUSG00000017692.8, intron 8 of 8) protein_coding-intron (ENSMUSG00000017692.8, intron 8 of 8) 5380 ENSMUSG00000017692.8 ENSMUSG00000017692 ENSMUST00000157016 Rhbdl3 protein_coding Interval_133757 chr6 11673092 11673725 + 0 NA Intergenic Intergenic 234075 ENSMUSG00000029632.7 ENSMUSG00000029632 ENSMUST00000204714 Ndufa4 protein_coding Interval_125237 chr5 65583105 65583556 + 0 NA intron (ENSMUSG00000029203.16, intron 3 of 5) protein_coding-intron (ENSMUSG00000029203.16, intron 4 of 6) 8110 ENSMUSG00000107102.1 ENSMUSG00000107102 ENSMUST00000202274 Gm42726 antisense Interval_157359 chr8 69848820 69851369 + 0 NA intron (ENSMUSG00000031860.17, intron 1 of 2) protein_coding-intron (ENSMUSG00000031860.17, intron 1 of 7) 17457 ENSMUSG00000031860.17 ENSMUSG00000031860 ENSMUST00000135952 Pbx4 protein_coding Interval_23243 chr11 20849643 20851168 + 0 NA Intergenic Intergenic -2524 ENSMUSG00000064671.1 ENSMUSG00000064671 ENSMUST00000082737 Gm22807 snoRNA Interval_154293 chr8 14072267 14073243 + 0 NA intron (ENSMUSG00000051978.9, intron 2 of 4) protein_coding-intron (ENSMUSG00000051978.9, intron 2 of 5) -4937 ENSMUSG00000109982.1 ENSMUSG00000109982 ENSMUST00000210109 Gm45520 TEC Interval_7616 chr1 132524032 132524390 + 0 NA promoter-TSS (ENSMUSG00000053024.14) protein_coding-promoter-TSS (ENSMUSG00000053024.14) 17322 ENSMUSG00000048174.2 ENSMUSG00000048174 ENSMUST00000188789 Tmem81 protein_coding Interval_112016 chr4 33260193 33260620 + 0 NA intron (ENSMUSG00000040128.9, intron 1 of 1) protein_coding-intron (ENSMUSG00000040128.9, intron 1 of 1) -12831 ENSMUSG00000040128.9 ENSMUSG00000040128 ENSMUST00000137589 Pnrc1 protein_coding Interval_169996 chr9 103490205 103490896 + 0 NA exon (ENSMUSG00000042757.16, exon 1 of 2) protein_coding-exon (ENSMUSG00000042757.16, exon 1 of 2) 1224 ENSMUSG00000085168.2 ENSMUSG00000085168 ENSMUST00000215604 Gm16252 antisense Interval_6564 chr1 116861425 116862644 + 0 NA Intergenic Intergenic 59051 ENSMUSG00000094429.2 ENSMUSG00000094429 ENSMUST00000179777 Gm19965 protein_coding Interval_61936 chr15 85349920 85350103 + 0 NA intron (ENSMUSG00000016541.10, intron 1 of 11) protein_coding-intron (ENSMUSG00000016541.10, intron 1 of 11) 1243 ENSMUSG00000064764.1 ENSMUSG00000064764 ENSMUST00000082830 Gm23517 snRNA Interval_98744 chr2 154638177 154638747 + 0 NA intron (ENSMUSG00000059842.12, intron 9 of 13) protein_coding-intron (ENSMUSG00000059842.12, intron 10 of 14) -5826 ENSMUSG00000085483.1 ENSMUSG00000085483 ENSMUST00000153208 Gm14198 antisense Interval_65786 chr16 28842818 28843035 + 0 NA intron (ENSMUSG00000051065.9, intron 1 of 1) protein_coding-intron (ENSMUSG00000051065.9, intron 1 of 1) -6559 ENSMUSG00000051065.9 ENSMUSG00000051065 ENSMUST00000232571 Mb21d2 protein_coding Interval_77855 chr18 4672366 4672677 + 0 NA exon (ENSMUSG00000033960.6, exon 3 of 4) protein_coding-exon (ENSMUSG00000033960.6, exon 3 of 4) 37643 ENSMUSG00000033960.6 ENSMUSG00000033960 ENSMUST00000234153 Jcad protein_coding Interval_13586 chr10 19964681 19965715 + 0 NA intron (ENSMUSG00000071369.11, intron 1 of 3) protein_coding-intron (ENSMUSG00000071369.11, intron 1 of 29) -57547 ENSMUSG00000020003.16 ENSMUSG00000020003 ENSMUST00000214951 Pex7 protein_coding Interval_42965 chr13 21940285 21941275 + 0 NA intron (ENSMUSG00000085393.1, intron 1 of 1) bidirectional_promoter_lncRNA-intron (ENSMUSG00000085393.1, intron 1 of 1) -4332 ENSMUSG00000006720.16 ENSMUSG00000006720 ENSMUST00000176003 Zfp184 protein_coding Interval_28439 chr11 75883494 75884073 + 0 NA intron (ENSMUSG00000020847.15, intron 4 of 8) protein_coding-intron (ENSMUSG00000020847.15, intron 3 of 7) 22814 ENSMUSG00000087322.1 ENSMUSG00000087322 ENSMUST00000135873 Gm16075 antisense Interval_85490 chr19 27429390 27430716 + 0 NA promoter-TSS (ENSMUSG00000041360.8) protein_coding-promoter-TSS (ENSMUSG00000041360.8) -9954 ENSMUSG00000041360.8 ENSMUSG00000041360 ENSMUST00000236702 Pum3 protein_coding Interval_69339 chr16 92334238 92334677 + 0 NA Intergenic Intergenic -5203 ENSMUSG00000116967.1 ENSMUSG00000116967 ENSMUST00000231670 Smim34 processed_pseudogene Interval_122951 chr5 27778589 27779330 + 0 NA intron (ENSMUSG00000002221.11, intron 4 of 5) protein_coding-intron (ENSMUSG00000002221.11, intron 4 of 20) 12732 ENSMUSG00000002221.11 ENSMUSG00000002221 ENSMUST00000199714 Paxip1 protein_coding Interval_115647 chr4 101592120 101593116 + 0 NA intron (ENSMUSG00000028528.17, intron 1 of 18) protein_coding-intron (ENSMUSG00000028528.17, intron 1 of 18) 37523 ENSMUSG00000089446.1 ENSMUSG00000089446 ENSMUST00000158821 Gm22533 misc_RNA Interval_149689 chr7 100662220 100664086 + 0 NA promoter-TSS (ENSMUSG00000030701.17) protein_coding-promoter-TSS (ENSMUSG00000030701.17) -797 ENSMUSG00000030701.17 ENSMUSG00000030701 ENSMUST00000208812 Plekhb1 protein_coding Interval_130935 chr5 134137568 134137899 + 0 NA TTS (ENSMUSG00000015944.9) protein_coding-TTS (ENSMUSG00000015944.9) 30527 ENSMUSG00000061979.8 ENSMUSG00000061979 ENSMUST00000156574 Rcc1l protein_coding Interval_66060 chr16 31320755 31321529 + 0 NA Intergenic Intergenic -4093 ENSMUSG00000116973.1 ENSMUSG00000116973 ENSMUST00000231745 AV205837 lincRNA Interval_70164 chr17 5894622 5895113 + 0 NA intron (ENSMUSG00000002365.10, intron 4 of 17) protein_coding-intron (ENSMUSG00000002365.10, intron 4 of 17) -44220 ENSMUSG00000116734.1 ENSMUSG00000116734 ENSMUST00000231634 Gm8376 processed_pseudogene Interval_136290 chr6 52580341 52580706 + 0 NA intron (ENSMUSG00000029776.11, intron 3 of 5) protein_coding-intron (ENSMUSG00000029776.11, intron 4 of 7) 19971 ENSMUSG00000107647.1 ENSMUSG00000107647 ENSMUST00000204075 Gm44445 TEC Interval_6885 chr1 120361537 120361778 + 0 NA Intergenic Intergenic 21075 ENSMUSG00000036907.9 ENSMUSG00000036907 ENSMUST00000037286 C1ql2 protein_coding Interval_169196 chr9 95453299 95453967 + 0 NA Intergenic Intergenic 28003 ENSMUSG00000101459.1 ENSMUSG00000101459 ENSMUST00000190263 Gm19193 processed_pseudogene Interval_162024 chr8 124510392 124510810 + 0 NA Intergenic Intergenic -10218 ENSMUSG00000031979.17 ENSMUSG00000031979 ENSMUST00000129977 Cog2 protein_coding Interval_60038 chr15 64141380 64142741 + 0 NA intron (ENSMUSG00000022377.16, intron 14 of 30) protein_coding-intron (ENSMUSG00000022377.16, intron 14 of 30) -18254 ENSMUSG00000022377.16 ENSMUSG00000022377 ENSMUST00000175963 Asap1 protein_coding Interval_165863 chr9 53905593 53906471 + 0 NA Intergenic Intergenic 20994 ENSMUSG00000041986.16 ENSMUSG00000041986 ENSMUST00000213111 Elmod1 protein_coding Interval_135448 chr6 39399856 39400806 + 0 NA TTS (ENSMUSG00000029922.15) protein_coding-TTS (ENSMUSG00000029922.15) 4399 ENSMUSG00000029922.15 ENSMUSG00000029922 ENSMUST00000114822 Mkrn1 protein_coding Interval_15324 chr10 44501625 44501857 + 0 NA intron (ENSMUSG00000038151.13, intron 1 of 3) protein_coding-intron (ENSMUSG00000038151.13, intron 1 of 3) -44531 ENSMUSG00000038151.13 ENSMUSG00000038151 ENSMUST00000167340 Prdm1 protein_coding Interval_51605 chr14 30653886 30655055 + 0 NA promoter-TSS (ENSMUSG00000052395.17) protein_coding-promoter-TSS (ENSMUSG00000052395.17) 63 ENSMUSG00000052395.17 ENSMUSG00000052395 ENSMUST00000226805 Rft1 protein_coding Interval_126929 chr5 97357707 97358006 + 0 NA Intergenic Intergenic 31952 ENSMUSG00000104717.1 ENSMUSG00000104717 ENSMUST00000197615 Gm33969 lincRNA Interval_149214 chr7 96334419 96334821 + 0 NA intron (ENSMUSG00000048078.16, intron 1 of 32) protein_coding-intron (ENSMUSG00000048078.16, intron 1 of 32) 7344 ENSMUSG00000085751.1 ENSMUSG00000085751 ENSMUST00000137193 Gm15412 antisense Interval_528 chr1 7020555 7021081 + 0 NA Intergenic Intergenic 7056 ENSMUSG00000102213.1 ENSMUSG00000102213 ENSMUST00000191883 Gm37489 processed_pseudogene Interval_83467 chr18 86242951 86243599 + 0 NA exon (ENSMUSG00000118283.1, exon 1 of 1) processed_pseudogene-exon (ENSMUSG00000118283.1, exon 1 of 1) 245 ENSMUSG00000118283.1 ENSMUSG00000118283 ENSMUST00000238105 Gm7623 processed_pseudogene Interval_77656 chr17 93620893 93621155 + 0 NA Intergenic Intergenic 59641 ENSMUSG00000117514.1 ENSMUSG00000117514 ENSMUST00000234106 Gm50002 processed_pseudogene Interval_136840 chr6 61232555 61234227 + 0 NA intron (ENSMUSG00000039578.17, intron 1 of 1) protein_coding-intron (ENSMUSG00000039578.17, intron 1 of 10) -58866 ENSMUSG00000097924.2 ENSMUSG00000097924 ENSMUST00000181288 A730020E08Rik bidirectional_promoter_lncRNA Interval_158188 chr8 79638778 79640332 + 0 NA promoter-TSS (ENSMUSG00000036990.13) protein_coding-promoter-TSS (ENSMUSG00000036990.13) -21529 ENSMUSG00000036990.13 ENSMUSG00000036990 ENSMUST00000172614 Otud4 protein_coding Interval_74040 chr17 46229589 46230289 + 0 NA promoter-TSS (ENSMUSG00000067150.6) protein_coding-promoter-TSS (ENSMUSG00000067150.6) -1592 ENSMUSG00000076141.1 ENSMUSG00000076141 ENSMUST00000102187 Mir693 miRNA Interval_29845 chr11 87241312 87241815 + 0 NA intron (ENSMUSG00000046442.4, intron 3 of 6) protein_coding-intron (ENSMUSG00000046442.4, intron 3 of 6) 51489 ENSMUSG00000018548.15 ENSMUSG00000018548 ENSMUST00000154138 Trim37 protein_coding Interval_84773 chr19 16484344 16484559 + 0 NA intron (ENSMUSG00000024697.4, intron 1 of 6) protein_coding-intron (ENSMUSG00000024697.4, intron 1 of 6) 6613 ENSMUSG00000117699.1 ENSMUSG00000117699 ENSMUST00000236751 Gm8222 processed_pseudogene Interval_124586 chr5 51973186 51973811 + 0 NA Intergenic Intergenic -62567 ENSMUSG00000105942.1 ENSMUSG00000105942 ENSMUST00000198450 Gm43175 TEC Interval_43507 chr13 32213850 32215141 + 0 NA intron (ENSMUSG00000038372.14, intron 2 of 2) protein_coding-intron (ENSMUSG00000038372.14, intron 4 of 10) -115320 ENSMUSG00000112944.1 ENSMUSG00000112944 ENSMUST00000222438 Gm48885 TEC Interval_144455 chr7 25263968 25264606 + 0 NA Intergenic Intergenic -13557 ENSMUSG00000040857.15 ENSMUSG00000040857 ENSMUST00000116343 Erf protein_coding Interval_44214 chr13 42278239 42278907 + 0 NA Intergenic Intergenic -22903 ENSMUSG00000021367.8 ENSMUSG00000021367 ENSMUST00000021796 Edn1 protein_coding Interval_131123 chr5 135274691 135275352 + 0 NA Intergenic Intergenic 10695 ENSMUSG00000106913.1 ENSMUSG00000106913 ENSMUST00000201947 9430007M09Rik TEC Interval_77053 chr17 86092445 86093254 + 0 NA intron (ENSMUSG00000024135.10, intron 6 of 6) protein_coding-intron (ENSMUSG00000024135.10, intron 14 of 20) -52485 ENSMUSG00000024135.10 ENSMUSG00000024135 ENSMUST00000234595 Srbd1 protein_coding Interval_169348 chr9 96597539 96598237 + 0 NA intron (ENSMUSG00000032413.12, intron 4 of 19) protein_coding-intron (ENSMUSG00000032413.12, intron 4 of 23) 13585 ENSMUSG00000100522.1 ENSMUSG00000100522 ENSMUST00000190191 Gm19280 processed_pseudogene Interval_39039 chr12 84605075 84606380 + 0 NA intron (ENSMUSG00000021240.6, intron 13 of 17) protein_coding-intron (ENSMUSG00000021240.6, intron 13 of 18) 11686 ENSMUSG00000021240.6 ENSMUSG00000021240 ENSMUST00000221070 Abcd4 protein_coding Interval_102919 chr3 32783320 32783506 + 0 NA Intergenic Intergenic -34298 ENSMUSG00000056900.13 ENSMUSG00000056900 ENSMUST00000156769 Usp13 protein_coding Interval_106582 chr3 97522508 97523322 + 0 NA Intergenic Intergenic -87017 ENSMUSG00000105004.1 ENSMUSG00000105004 ENSMUST00000198613 Gm43075 TEC Interval_79737 chr18 34802927 34804151 + 0 NA TTS (ENSMUSG00000038773.11) protein_coding-TTS (ENSMUSG00000038773.11) 6644 ENSMUSG00000038773.11 ENSMUSG00000038773 ENSMUST00000223567 Kdm3b protein_coding Interval_123448 chr5 32631740 32632029 + 0 NA TTS (ENSMUSG00000107018.1) TEC-TTS (ENSMUSG00000107018.1) 2042 ENSMUSG00000107018.1 ENSMUSG00000107018 ENSMUST00000200773 Gm43694 TEC Interval_21726 chr11 3970001 3970234 + 0 NA intron (ENSMUSG00000020430.12, intron 3 of 8) protein_coding-intron (ENSMUSG00000020430.12, intron 3 of 14) 6068 ENSMUSG00000020430.12 ENSMUSG00000020430 ENSMUST00000137544 Pes1 protein_coding Interval_129993 chr5 123584337 123584713 + 0 NA intron (ENSMUSG00000049550.17, intron 7 of 11) protein_coding-intron (ENSMUSG00000049550.17, intron 20 of 24) -22538 ENSMUSG00000104704.1 ENSMUSG00000104704 ENSMUST00000197472 Gm43133 TEC Interval_134621 chr6 30006795 30007754 + 0 NA Intergenic Intergenic 18886 ENSMUSG00000095989.1 ENSMUSG00000095989 ENSMUST00000178068 Gm23049 miRNA Interval_5181 chr1 86302910 86304121 + 0 NA promoter-TSS (ENSMUSG00000079445.3) protein_coding-promoter-TSS (ENSMUSG00000079445.3) 544 ENSMUSG00000099644.1 ENSMUSG00000099644 ENSMUST00000187004 Gm28626 antisense Interval_121560 chr5 3444522 3445203 + 0 NA intron (ENSMUSG00000040274.11, intron 4 of 7) protein_coding-intron (ENSMUSG00000040274.11, intron 3 of 6) -26087 ENSMUSG00000040274.11 ENSMUSG00000040274 ENSMUST00000199396 Cdk6 protein_coding Interval_31506 chr11 101076333 101077171 + 0 NA TTS (ENSMUSG00000001751.9) protein_coding-TTS (ENSMUSG00000001751.9) -1659 ENSMUSG00000019301.5 ENSMUSG00000019301 ENSMUST00000019445 Hsd17b1 protein_coding Interval_43611 chr13 34096054 34097360 + 0 NA intron (ENSMUSG00000113591.1, intron 2 of 4) processed_transcript-intron (ENSMUSG00000113591.1, intron 2 of 4) -7680 ENSMUSG00000114067.1 ENSMUSG00000114067 ENSMUST00000221908 Gm47065 transcribed_unprocessed_pseudogene Interval_38982 chr12 84266750 84267177 + 0 NA Intergenic Intergenic -7990 ENSMUSG00000042962.5 ENSMUSG00000042962 ENSMUST00000058103 Gm5436 processed_pseudogene Interval_36285 chr12 40694266 40695244 + 0 NA intron (ENSMUSG00000035954.10, intron 13 of 31) protein_coding-intron (ENSMUSG00000035954.10, intron 13 of 52) -180782 ENSMUSG00000113435.1 ENSMUSG00000113435 ENSMUST00000221545 Gm19441 processed_pseudogene Interval_62548 chr15 94565684 94567279 + 0 NA intron (ENSMUSG00000059883.16, intron 10 of 11) protein_coding-intron (ENSMUSG00000059883.16, intron 10 of 11) 18994 ENSMUSG00000022451.12 ENSMUSG00000022451 ENSMUST00000152590 Twf1 protein_coding Interval_98336 chr2 151575270 151576651 + 0 NA intron (ENSMUSG00000027456.8, intron 1 of 8) protein_coding-intron (ENSMUSG00000027456.8, intron 1 of 8) 3338 ENSMUSG00000027456.8 ENSMUSG00000027456 ENSMUST00000028950 Sdcbp2 protein_coding Interval_87152 chr19 46490425 46491100 + 0 NA Intergenic Intergenic -23898 ENSMUSG00000025034.9 ENSMUSG00000025034 ENSMUST00000235934 Trim8 protein_coding Interval_142453 chr6 142455535 142456464 + 0 NA intron (ENSMUSG00000030244.7, intron 5 of 16) protein_coding-intron (ENSMUSG00000030244.7, intron 5 of 16) -32380 ENSMUSG00000030244.7 ENSMUSG00000030244 ENSMUST00000126939 Gys2 protein_coding Interval_39480 chr12 88336177 88336418 + 0 NA TTS (ENSMUSG00000113617.1) processed_pseudogene-TTS (ENSMUSG00000113617.1) 1673 ENSMUSG00000113617.1 ENSMUSG00000113617 ENSMUST00000221159 Gm8655 processed_pseudogene Interval_34789 chr12 11208181 11209857 + 0 NA promoter-TSS (ENSMUSG00000047002.2) protein_coding-promoter-TSS (ENSMUSG00000047002.2) -47 ENSMUSG00000047002.2 ENSMUSG00000047002 ENSMUST00000049877 Msgn1 protein_coding Interval_141283 chr6 126823674 126825065 + 0 NA intron (ENSMUSG00000107368.1, intron 1 of 1) protein_coding-intron (ENSMUSG00000000399.10, intron 10 of 10) 1992 ENSMUSG00000107368.1 ENSMUSG00000107368 ENSMUST00000201350 1700018A23Rik antisense Interval_42775 chr13 19365291 19366278 + 0 NA intron (ENSMUSG00000003062.13, intron 7 of 7) protein_coding-intron (ENSMUSG00000003062.13, intron 7 of 8) 21226 ENSMUSG00000076757.9 ENSMUSG00000076757 ENSMUST00000179181 Trgc4 TR_C_gene Interval_94328 chr2 89037205 89038161 + 0 NA Intergenic Intergenic -7732 ENSMUSG00000101391.3 ENSMUSG00000101391 ENSMUST00000099799 Olfr1217 protein_coding Interval_97160 chr2 131876659 131877558 + 0 NA Intergenic Intergenic -17361 ENSMUSG00000037482.2 ENSMUSG00000037482 ENSMUST00000040941 Erv3 protein_coding Interval_98553 chr2 153177545 153177759 + 0 NA intron (ENSMUSG00000068040.10, intron 1 of 8) protein_coding-intron (ENSMUSG00000068040.10, intron 1 of 17) -22596 ENSMUSG00000068040.10 ENSMUSG00000068040 ENSMUST00000149390 Tm9sf4 protein_coding Interval_83919 chr19 5588808 5589407 + 0 NA Intergenic Intergenic -12829 ENSMUSG00000024925.11 ENSMUSG00000024925 ENSMUST00000133953 Rnaseh2c protein_coding Interval_83502 chr18 88137987 88138162 + 0 NA Intergenic Intergenic -41524 ENSMUSG00000117801.1 ENSMUSG00000117801 ENSMUST00000237897 Gm50391 processed_pseudogene Interval_155016 chr8 25719857 25721245 + 0 NA promoter-TSS (ENSMUSG00000031570.17) protein_coding-promoter-TSS (ENSMUSG00000031570.17) -37 ENSMUSG00000031570.17 ENSMUSG00000031570 ENSMUST00000146762 Plpp5 protein_coding Interval_6050 chr1 95033488 95034659 + 0 NA Intergenic Intergenic 5970 ENSMUSG00000089310.1 ENSMUSG00000089310 ENSMUST00000158685 Gm23181 snoRNA Interval_82189 chr18 68709591 68710205 + 0 NA Intergenic Intergenic -29502 ENSMUSG00000099300.1 ENSMUSG00000099300 ENSMUST00000183541 Mir6356 miRNA Interval_130624 chr5 129283823 129284366 + 0 NA Intergenic Intergenic -80026 ENSMUSG00000104681.1 ENSMUSG00000104681 ENSMUST00000199076 Gm43001 lincRNA Interval_21885 chr11 4975371 4976319 + 0 NA Intergenic Intergenic -27781 ENSMUSG00000020396.8 ENSMUSG00000020396 ENSMUST00000093369 Nefh protein_coding Interval_49329 chr13 111074172 111074928 + 0 NA Intergenic Intergenic -55729 ENSMUSG00000114747.1 ENSMUSG00000114747 ENSMUST00000223653 Gm48547 processed_pseudogene Interval_96248 chr2 120956917 120957572 + 0 NA intron (ENSMUSG00000027272.5, intron 3 of 8) protein_coding-intron (ENSMUSG00000027272.5, intron 3 of 46) 20483 ENSMUSG00000105465.1 ENSMUSG00000105465 ENSMUST00000196757 Gm44325 miRNA Interval_107825 chr3 115887348 115888752 + 0 NA promoter-TSS (ENSMUSG00000033554.17) protein_coding-promoter-TSS (ENSMUSG00000033554.17) 47 ENSMUSG00000054426.11 ENSMUSG00000054426 ENSMUST00000067500 A930005H10Rik processed_transcript Interval_21606 chr10 130527341 130528386 + 0 NA Intergenic Intergenic 8098 ENSMUSG00000112195.1 ENSMUSG00000112195 ENSMUST00000218754 Gm35405 processed_pseudogene Interval_29466 chr11 84168740 84169617 + 0 NA intron (ENSMUSG00000020532.18, intron 1 of 3) protein_coding-intron (ENSMUSG00000020532.18, intron 1 of 3) -1702 ENSMUSG00000051452.8 ENSMUSG00000051452 ENSMUST00000050771 Gm11437 protein_coding Interval_35774 chr12 29248435 29248708 + 0 NA Intergenic Intergenic 68997 ENSMUSG00000112776.1 ENSMUSG00000112776 ENSMUST00000218409 Gm6989 processed_pseudogene Interval_13641 chr10 20357437 20357774 + 0 NA TTS (ENSMUSG00000019992.8) protein_coding-TTS (ENSMUSG00000019992.8) 7832 ENSMUSG00000111351.1 ENSMUSG00000111351 ENSMUST00000213596 Gm48537 processed_pseudogene Interval_37750 chr12 71702056 71702350 + 0 NA intron (ENSMUSG00000114028.1, intron 3 of 5) lincRNA-intron (ENSMUSG00000114028.1, intron 3 of 5) -22449 ENSMUSG00000084463.1 ENSMUSG00000084463 ENSMUST00000122514 Gm22959 misc_RNA Interval_2471 chr1 39609100 39609285 + 0 NA Intergenic Intergenic -11187 ENSMUSG00000102471.1 ENSMUSG00000102471 ENSMUST00000195631 Gm5100 processed_pseudogene Interval_19825 chr10 109768195 109769237 + 0 NA intron (ENSMUSG00000020181.18, intron 16 of 40) protein_coding-intron (ENSMUSG00000020181.18, intron 14 of 38) 119937 ENSMUSG00000112260.1 ENSMUSG00000112260 ENSMUST00000219153 3110043J17Rik TEC Interval_46736 chr13 69733875 69734608 + 0 NA intron (ENSMUSG00000052981.6, intron 1 of 1) protein_coding-intron (ENSMUSG00000052981.6, intron 1 of 1) 5648 ENSMUSG00000052981.6 ENSMUSG00000052981 ENSMUST00000065118 Ube2ql1 protein_coding Interval_9367 chr1 156608711 156609657 + 0 NA intron (ENSMUSG00000026596.13, intron 1 of 2) protein_coding-intron (ENSMUSG00000026596.13, intron 1 of 11) -6739 ENSMUSG00000026596.13 ENSMUSG00000026596 ENSMUST00000190749 Abl2 protein_coding Interval_47460 chr13 84663613 84664017 + 0 NA Intergenic Intergenic 27126 ENSMUSG00000098081.1 ENSMUSG00000098081 ENSMUST00000182391 Gm26913 processed_pseudogene Interval_29701 chr11 86216686 86216895 + 0 NA intron (ENSMUSG00000018068.13, intron 19 of 23) protein_coding-intron (ENSMUSG00000018068.13, intron 20 of 24) 15386 ENSMUSG00000018068.13 ENSMUSG00000018068 ENSMUST00000141756 Ints2 protein_coding Interval_59711 chr15 58799838 58800549 + 0 NA intron (ENSMUSG00000062373.8, intron 1 of 6) protein_coding-intron (ENSMUSG00000062373.8, intron 1 of 6) -18242 ENSMUSG00000093677.1 ENSMUSG00000093677 ENSMUST00000176387 Gm20712 sense_overlapping Interval_10567 chr1 171916977 171917242 + 0 NA promoter-TSS (ENSMUSG00000015314.10) protein_coding-promoter-TSS (ENSMUSG00000015314.10) -406 ENSMUSG00000015314.10 ENSMUSG00000015314 ENSMUST00000195206 Slamf6 protein_coding Interval_170535 chr9 108569782 108570804 + 0 NA promoter-TSS (ENSMUSG00000019039.14) protein_coding-promoter-TSS (ENSMUSG00000019039.14) 383 ENSMUSG00000019039.14 ENSMUSG00000019039 ENSMUST00000192518 Dalrd3 protein_coding Interval_2368 chr1 38620779 38622347 + 0 NA intron (ENSMUSG00000037138.18, intron 1 of 22) protein_coding-intron (ENSMUSG00000037138.18, intron 2 of 7) 5638 ENSMUSG00000037138.18 ENSMUSG00000037138 ENSMUST00000134963 Aff3 protein_coding Interval_98393 chr2 152029105 152030096 + 0 NA Intergenic Intergenic 29735 ENSMUSG00000027463.14 ENSMUSG00000027463 ENSMUST00000109858 Slc52a3 protein_coding Interval_91597 chr2 44340607 44341931 + 0 NA intron (ENSMUSG00000049744.15, intron 13 of 14) protein_coding-intron (ENSMUSG00000049744.15, intron 13 of 13) -87666 ENSMUSG00000088124.1 ENSMUSG00000088124 ENSMUST00000157499 Gm22867 snRNA Interval_171403 chr9 117723276 117724205 + 0 NA intron (ENSMUSG00000039607.17, intron 1 of 3) protein_coding-intron (ENSMUSG00000039607.17, intron 1 of 3) 148941 ENSMUSG00000039607.17 ENSMUSG00000039607 ENSMUST00000210659 Rbms3 protein_coding Interval_23832 chr11 26785010 26785398 + 0 NA Intergenic Intergenic -1429 ENSMUSG00000069939.8 ENSMUSG00000069939 ENSMUST00000119551 Gm12070 processed_pseudogene Interval_131743 chr5 139590895 139591719 + 0 NA Intergenic Intergenic 47409 ENSMUSG00000029546.12 ENSMUSG00000029546 ENSMUST00000174792 Uncx protein_coding Interval_91102 chr2 35066270 35068294 + 0 NA Intergenic Intergenic 33407 ENSMUSG00000035875.15 ENSMUSG00000035875 ENSMUST00000154817 AI182371 protein_coding Interval_2789 chr1 45165492 45166281 + 0 NA Intergenic Intergenic -12181 ENSMUSG00000101937.1 ENSMUSG00000101937 ENSMUST00000189212 Gm5268 processed_pseudogene Interval_80349 chr18 39773462 39773976 + 0 NA exon (ENSMUSG00000051732.2, exon 1 of 1) protein_coding-exon (ENSMUSG00000051732.2, exon 1 of 1) 222 ENSMUSG00000051732.2 ENSMUSG00000051732 ENSMUST00000063219 Pabpc2 protein_coding Interval_22128 chr11 6506424 6506982 + 0 NA TTS (ENSMUSG00000020437.12) protein_coding-TTS (ENSMUSG00000020437.12) 14255 ENSMUSG00000020437.12 ENSMUSG00000020437 ENSMUST00000134489 Myo1g protein_coding Interval_171221 chr9 115309312 115311312 + 0 NA exon (ENSMUSG00000032437.10, exon 1 of 16) protein_coding-exon (ENSMUSG00000032437.10, exon 1 of 16) 109 ENSMUSG00000032437.10 ENSMUSG00000032437 ENSMUST00000035010 Stt3b protein_coding Interval_87489 chr19 53014709 53015596 + 0 NA intron (ENSMUSG00000025027.18, intron 2 of 19) protein_coding-intron (ENSMUSG00000025027.18, intron 4 of 6) -4396 ENSMUSG00000098730.1 ENSMUSG00000098730 ENSMUST00000184510 Mir6407 miRNA Interval_140847 chr6 122316579 122317182 + 0 NA TTS (ENSMUSG00000040669.14) protein_coding-TTS (ENSMUSG00000040669.14) 7881 ENSMUSG00000007458.14 ENSMUSG00000007458 ENSMUST00000123093 M6pr protein_coding Interval_29256 chr11 82339726 82340487 + 0 NA Intergenic Intergenic -34416 ENSMUSG00000020702.13 ENSMUSG00000020702 ENSMUST00000021043 Ccl1 protein_coding Interval_36154 chr12 36670348 36671166 + 0 NA intron (ENSMUSG00000043153.6, intron 8 of 8) protein_coding-intron (ENSMUSG00000043153.6, intron 9 of 9) 131400 ENSMUSG00000114135.1 ENSMUSG00000114135 ENSMUST00000223284 Gm7252 processed_pseudogene Interval_161989 chr8 124283857 124285287 + 0 NA intron (ENSMUSG00000089704.9, intron 1 of 4) protein_coding-intron (ENSMUSG00000089704.9, intron 1 of 15) -10794 ENSMUSG00000089704.9 ENSMUSG00000089704 ENSMUST00000147911 Galnt2 protein_coding Interval_76028 chr17 74469715 74470707 + 0 NA Intergenic Intergenic -21633 ENSMUSG00000024072.9 ENSMUSG00000024072 ENSMUST00000234853 Yipf4 protein_coding Interval_12931 chr10 8276773 8276963 + 0 NA intron (ENSMUSG00000047712.8, intron 2 of 6) protein_coding-intron (ENSMUSG00000047712.8, intron 5 of 7) 25374 ENSMUSG00000047712.8 ENSMUSG00000047712 ENSMUST00000061601 Ust protein_coding Interval_164581 chr9 39395968 39396602 + 0 NA TTS (ENSMUSG00000094269.2) protein_coding-TTS (ENSMUSG00000094269.2) 8875 ENSMUSG00000094269.2 ENSMUSG00000094269 ENSMUST00000078531 Olfr951 protein_coding Interval_135227 chr6 37659670 37660778 + 0 NA Intergenic Intergenic 26971 ENSMUSG00000107035.1 ENSMUSG00000107035 ENSMUST00000201305 Ybx1-ps2 processed_pseudogene Interval_18270 chr10 84495567 84496064 + 0 NA intron (ENSMUSG00000020033.2, intron 3 of 3) lincRNA-intron (ENSMUSG00000020033.2, intron 3 of 3) -3059 ENSMUSG00000111487.1 ENSMUSG00000111487 ENSMUST00000214766 1700092E16Rik TEC Interval_19028 chr10 93896915 93898209 + 0 NA promoter-TSS (ENSMUSG00000036112.15) protein_coding-promoter-TSS (ENSMUSG00000036112.15) 404 ENSMUSG00000097689.1 ENSMUSG00000097689 ENSMUST00000180815 4930471D02Rik lincRNA Interval_38376 chr12 78084567 78084779 + 0 NA Intergenic Intergenic -80873 ENSMUSG00000088039.1 ENSMUSG00000088039 ENSMUST00000157414 Gm24994 snoRNA Interval_42656 chr13 17740425 17740776 + 0 NA intron (ENSMUSG00000041297.8, intron 7 of 13) protein_coding-intron (ENSMUSG00000041297.8, intron 7 of 13) -3546 ENSMUSG00000113432.1 ENSMUSG00000113432 ENSMUST00000220908 8430406P12Rik TEC Interval_125039 chr5 64030512 64030982 + 0 NA Intergenic Intergenic -14231 ENSMUSG00000106219.1 ENSMUSG00000106219 ENSMUST00000198687 5830416I19Rik lincRNA Interval_123592 chr5 33668135 33668744 + 0 NA promoter-TSS (ENSMUSG00000037313.16) protein_coding-promoter-TSS (ENSMUSG00000037313.16) 10292 ENSMUSG00000037313.16 ENSMUSG00000037313 ENSMUST00000139888 Tacc3 protein_coding Interval_51840 chr14 32682422 32682826 + 0 NA intron (ENSMUSG00000071540.4, intron 2 of 3) protein_coding-intron (ENSMUSG00000071540.4, intron 1 of 3) 2669 ENSMUSG00000071540.4 ENSMUSG00000071540 ENSMUST00000226958 3425401B19Rik protein_coding Interval_3739 chr1 62696545 62697214 + 0 NA Intergenic Intergenic -6406 ENSMUSG00000025969.15 ENSMUSG00000025969 ENSMUST00000114157 Nrp2 protein_coding Interval_22925 chr11 17465008 17465620 + 0 NA Intergenic Intergenic -82972 ENSMUSG00000087833.1 ENSMUSG00000087833 ENSMUST00000157208 Gm23959 misc_RNA Interval_113477 chr4 55279115 55279918 + 0 NA promoter-TSS (ENSMUSG00000087614.1) lincRNA-promoter-TSS (ENSMUSG00000087614.1) -37 ENSMUSG00000087614.1 ENSMUSG00000087614 ENSMUST00000142782 Gm12514 lincRNA Interval_2628 chr1 42623143 42623987 + 0 NA intron (ENSMUSG00000060424.14, intron 2 of 3) lincRNA-intron (ENSMUSG00000060424.14, intron 2 of 3) -28161 ENSMUSG00000104199.1 ENSMUSG00000104199 ENSMUST00000191831 4930420N18Rik TEC Interval_100270 chr2 168086811 168087024 + 0 NA intron (ENSMUSG00000044641.7, intron 1 of 2) protein_coding-intron (ENSMUSG00000044641.7, intron 1 of 2) 5913 ENSMUSG00000044641.7 ENSMUSG00000044641 ENSMUST00000052125 Pard6b protein_coding Interval_62058 chr15 86142702 86143810 + 0 NA intron (ENSMUSG00000035891.16, intron 6 of 7) protein_coding-intron (ENSMUSG00000035891.16, intron 11 of 12) -6328 ENSMUSG00000088357.1 ENSMUSG00000088357 ENSMUST00000157732 Gm24011 misc_RNA Interval_74473 chr17 51461857 51462771 + 0 NA Intergenic Intergenic 22407 ENSMUSG00000117041.1 ENSMUSG00000117041 ENSMUST00000233844 Gm46574 processed_pseudogene Interval_28606 chr11 77106666 77109214 + 0 NA TTS (ENSMUSG00000082550.1) processed_pseudogene-TTS (ENSMUSG00000082550.1) 240 ENSMUSG00000082550.1 ENSMUSG00000082550 ENSMUST00000117087 Gm12344 processed_pseudogene Interval_39603 chr12 91422497 91423948 + 0 NA intron (ENSMUSG00000020963.15, intron 1 of 9) protein_coding-intron (ENSMUSG00000020963.15, intron 1 of 8) 38659 ENSMUSG00000020963.15 ENSMUSG00000020963 ENSMUST00000186437 Tshr protein_coding Interval_96095 chr2 119723883 119724103 + 0 NA intron (ENSMUSG00000027304.9, intron 8 of 17) protein_coding-intron (ENSMUSG00000027304.9, intron 8 of 17) 12997 ENSMUSG00000027304.9 ENSMUSG00000027304 ENSMUST00000126984 Rtf1 protein_coding Interval_56246 chr14 114902664 114904321 + 0 NA Intergenic Intergenic -26982 ENSMUSG00000115309.1 ENSMUSG00000115309 ENSMUST00000226159 Gm49010 lincRNA Interval_65344 chr16 21710348 21710667 + 0 NA Intergenic Intergenic -15927 ENSMUSG00000043391.10 ENSMUSG00000043391 ENSMUST00000232634 2510009E07Rik protein_coding Interval_42976 chr13 22020610 22022736 + 0 NA TTS (ENSMUSG00000085827.8) lincRNA-TTS (ENSMUSG00000085827.8) 4167 ENSMUSG00000085827.8 ENSMUSG00000085827 ENSMUST00000224688 Gm11290 lincRNA Interval_150416 chr7 110268613 110268891 + 0 NA intron (ENSMUSG00000031015.8, intron 6 of 11) protein_coding-intron (ENSMUSG00000031015.8, intron 6 of 11) 12775 ENSMUSG00000109799.1 ENSMUSG00000109799 ENSMUST00000210796 Gm45515 antisense Interval_85258 chr19 24207001 24208287 + 0 NA intron (ENSMUSG00000024812.11, intron 1 of 23) protein_coding-intron (ENSMUSG00000024812.11, intron 1 of 22) 53574 ENSMUSG00000118371.1 ENSMUSG00000118371 ENSMUST00000237530 Gm50308 processed_pseudogene Interval_144341 chr7 24572344 24573482 + 0 NA intron (ENSMUSG00000051768.9, intron 2 of 3) protein_coding-intron (ENSMUSG00000051768.9, intron 15 of 16) -14630 ENSMUSG00000064254.6 ENSMUSG00000064254 ENSMUST00000077191 Ethe1 protein_coding Interval_60075 chr15 64571597 64572494 + 0 NA Intergenic Intergenic 61463 ENSMUSG00000115328.1 ENSMUSG00000115328 ENSMUST00000227641 Gm30691 lincRNA Interval_93048 chr2 69802410 69804925 + 0 NA Intergenic Intergenic -4055 ENSMUSG00000081857.1 ENSMUSG00000081857 ENSMUST00000120263 Gm13624 processed_pseudogene Interval_587 chr1 8272302 8272517 + 0 NA Intergenic Intergenic 181082 ENSMUSG00000102647.1 ENSMUSG00000102647 ENSMUST00000192338 Gm38024 TEC Interval_161672 chr8 121934630 121935720 + 0 NA intron (ENSMUSG00000025317.7, intron 2 of 6) protein_coding-intron (ENSMUSG00000025317.7, intron 2 of 6) -7701 ENSMUSG00000025317.7 ENSMUSG00000025317 ENSMUST00000151462 Car5a protein_coding Interval_126327 chr5 86730538 86731036 + 0 NA intron (ENSMUSG00000105704.1, intron 1 of 4) protein_coding-intron (ENSMUSG00000054537.8, intron 1 of 9) 1881 ENSMUSG00000105704.1 ENSMUSG00000105704 ENSMUST00000198859 Gm43055 lincRNA Interval_156837 chr8 60957348 60958547 + 0 NA intron (ENSMUSG00000004319.15, intron 1 of 11) protein_coding-intron (ENSMUSG00000004319.15, intron 2 of 13) 25297 ENSMUSG00000004319.15 ENSMUSG00000004319 ENSMUST00000145493 Clcn3 protein_coding Interval_67851 chr16 57929320 57929550 + 0 NA intron (ENSMUSG00000116920.1, intron 2 of 3) lincRNA-intron (ENSMUSG00000116920.1, intron 2 of 3) 26502 ENSMUSG00000104285.1 ENSMUSG00000104285 ENSMUST00000194055 Gm37458 TEC Interval_146394 chr7 45669088 45669334 + 0 NA Intergenic Intergenic -2903 ENSMUSG00000055978.5 ENSMUSG00000055978 ENSMUST00000210470 Fut2 protein_coding Interval_617 chr1 8956743 8957280 + 0 NA intron (ENSMUSG00000025909.16, intron 4 of 4) protein_coding-intron (ENSMUSG00000025909.16, intron 4 of 4) -4589 ENSMUSG00000025909.16 ENSMUSG00000025909 ENSMUST00000126083 Sntg1 protein_coding Interval_121338 chr4 155078290 155078877 + 0 NA exon (ENSMUSG00000029048.3, exon 4 of 7) protein_coding-exon (ENSMUSG00000029048.3, exon 4 of 7) 7788 ENSMUSG00000029048.3 ENSMUSG00000029048 ENSMUST00000125357 Rer1 protein_coding Interval_170414 chr9 107748289 107748573 + 0 NA exon (ENSMUSG00000032580.12, exon 1 of 1) protein_coding-exon (ENSMUSG00000032580.12, exon 1 of 1) 12132 ENSMUSG00000032580.12 ENSMUSG00000032580 ENSMUST00000181993 Rbm5 protein_coding Interval_134279 chr6 24450409 24450684 + 0 NA intron (ENSMUSG00000046192.4, intron 11 of 12) protein_coding-intron (ENSMUSG00000046192.4, intron 11 of 12) 64521 ENSMUSG00000046192.4 ENSMUSG00000046192 ENSMUST00000052277 Iqub protein_coding Interval_75285 chr17 65701669 65702817 + 0 NA intron (ENSMUSG00000056515.9, intron 3 of 6) protein_coding-intron (ENSMUSG00000056515.9, intron 3 of 6) -40665 ENSMUSG00000117114.1 ENSMUSG00000117114 ENSMUST00000233942 Gm49867 processed_pseudogene Interval_120392 chr4 148309771 148310160 + 0 NA intron (ENSMUSG00000087027.2, intron 2 of 3) lincRNA-intron (ENSMUSG00000087027.2, intron 2 of 3) 3112 ENSMUSG00000087027.2 ENSMUSG00000087027 ENSMUST00000129579 Gm13206 lincRNA Interval_126263 chr5 85216433 85216843 + 0 NA Intergenic Intergenic -349793 ENSMUSG00000106389.1 ENSMUSG00000106389 ENSMUST00000196930 Gm21006 processed_pseudogene Interval_75864 chr17 72164070 72165467 + 0 NA intron (ENSMUSG00000055471.7, intron 4 of 4) protein_coding-intron (ENSMUSG00000055471.7, intron 4 of 28) -91490 ENSMUSG00000117046.1 ENSMUSG00000117046 ENSMUST00000233853 Gm19183 processed_pseudogene Interval_117926 chr4 127124043 127126428 + 0 NA promoter-TSS (ENSMUSG00000070737.10) protein_coding-promoter-TSS (ENSMUSG00000070737.10) 1544 ENSMUSG00000070737.10 ENSMUSG00000070737 ENSMUST00000094712 Tmem35b protein_coding Interval_52914 chr14 52022549 52023560 + 0 NA promoter-TSS (ENSMUSG00000115141.1) lincRNA-promoter-TSS (ENSMUSG00000115141.1) -230 ENSMUSG00000115141.1 ENSMUSG00000115141 ENSMUST00000227187 Gm49256 lincRNA Interval_144577 chr7 26327218 26327640 + 0 NA intron (ENSMUSG00000040614.14, intron 7 of 7) protein_coding-intron (ENSMUSG00000040614.14, intron 7 of 7) -20143 ENSMUSG00000108431.1 ENSMUSG00000108431 ENSMUST00000206226 Gm42375 antisense Interval_61438 chr15 81616789 81617106 + 0 NA TTS (ENSMUSG00000055024.12) protein_coding-TTS (ENSMUSG00000055024.12) -4115 ENSMUSG00000055024.12 ENSMUSG00000055024 ENSMUST00000206431 Ep300 protein_coding Interval_117708 chr4 125695894 125696987 + 0 NA intron (ENSMUSG00000001985.9, intron 13 of 15) protein_coding-intron (ENSMUSG00000001985.9, intron 13 of 15) 191691 ENSMUSG00000094403.1 ENSMUSG00000094403 ENSMUST00000102081 Mir692-2 miRNA Interval_152243 chr7 130890966 130891547 + 0 NA intron (ENSMUSG00000040268.17, intron 4 of 10) protein_coding-intron (ENSMUSG00000040268.17, intron 3 of 9) 8904 ENSMUSG00000040268.17 ENSMUSG00000040268 ENSMUST00000135359 Plekha1 protein_coding Interval_52601 chr14 47814083 47814405 + 0 NA intron (ENSMUSG00000115310.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000115310.1, intron 1 of 3) -8925 ENSMUSG00000115215.1 ENSMUSG00000115215 ENSMUST00000226360 Gm41148 lincRNA Interval_146081 chr7 43712753 43714180 + 0 NA promoter-TSS (ENSMUSG00000054046.7) protein_coding-promoter-TSS (ENSMUSG00000054046.7) 67 ENSMUSG00000054046.7 ENSMUSG00000054046 ENSMUST00000205457 Klk13 protein_coding Interval_53261 chr14 55642566 55644172 + 0 NA promoter-TSS (ENSMUSG00000002320.15) protein_coding-promoter-TSS (ENSMUSG00000002320.15) -8 ENSMUSG00000002320.15 ENSMUSG00000002320 ENSMUST00000133707 Tm9sf1 protein_coding Interval_50817 chr14 20004848 20005582 + 0 NA Intergenic Intergenic -28031 ENSMUSG00000043004.13 ENSMUSG00000043004 ENSMUST00000161247 Gng2 protein_coding Interval_36003 chr12 33224273 33224846 + 0 NA intron (ENSMUSG00000020564.17, intron 3 of 12) protein_coding-intron (ENSMUSG00000020564.17, intron 2 of 2) 4295 ENSMUSG00000079143.3 ENSMUSG00000079143 ENSMUST00000155877 Atxn7l1os1 antisense Interval_86326 chr19 38775363 38776010 + 0 NA intron (ENSMUSG00000024998.17, intron 18 of 21) protein_coding-intron (ENSMUSG00000024998.17, intron 28 of 31) -23041 ENSMUSG00000101079.1 ENSMUSG00000101079 ENSMUST00000186584 Gm28991 antisense Interval_46395 chr13 64507323 64507536 + 0 NA intron (ENSMUSG00000113244.1, intron 2 of 2) lincRNA-intron (ENSMUSG00000113244.1, intron 2 of 2) -2061 ENSMUSG00000094597.2 ENSMUSG00000094597 ENSMUST00000177721 Gm4810 processed_pseudogene Interval_55115 chr14 78238023 78238255 + 0 NA Intergenic Intergenic 8172 ENSMUSG00000080402.1 ENSMUSG00000080402 ENSMUST00000116752 Gm23652 miRNA Interval_13096 chr10 11315336 11315920 + 0 NA Intergenic Intergenic 14787 ENSMUSG00000111983.1 ENSMUSG00000111983 ENSMUST00000219929 Gm48666 processed_pseudogene Interval_162254 chr8 126481723 126482224 + 0 NA Intergenic Intergenic -5561 ENSMUSG00000074026.3 ENSMUSG00000074026 ENSMUST00000098307 Gm6091 processed_pseudogene Interval_116115 chr4 107854596 107855342 + 0 NA intron (ENSMUSG00000028613.15, intron 1 of 6) protein_coding-intron (ENSMUSG00000028613.15, intron 9 of 18) -6337 ENSMUSG00000028613.15 ENSMUSG00000028613 ENSMUST00000238693 Lrp8 protein_coding Interval_111388 chr4 20139818 20139991 + 0 NA intron (ENSMUSG00000055761.14, intron 5 of 5) protein_coding-intron (ENSMUSG00000055761.14, intron 5 of 5) 97852 ENSMUSG00000073987.4 ENSMUSG00000073987 ENSMUST00000098242 Ggh protein_coding Interval_140716 chr6 120812111 120812726 + 0 NA intron (ENSMUSG00000019210.10, intron 1 of 3) protein_coding-intron (ENSMUSG00000019210.10, intron 2 of 8) 10274 ENSMUSG00000019210.10 ENSMUSG00000019210 ENSMUST00000204699 Atp6v1e1 protein_coding Interval_134295 chr6 24632157 24633756 + 0 NA exon (ENSMUSG00000029684.14, exon 5 of 5) protein_coding-exon (ENSMUSG00000029684.14, exon 5 of 5) -4883 ENSMUSG00000029684.14 ENSMUSG00000029684 ENSMUST00000173399 Wasl protein_coding Interval_48437 chr13 99024374 99024541 + 0 NA Intergenic Intergenic 10391 ENSMUSG00000114283.1 ENSMUSG00000114283 ENSMUST00000224351 Gm47057 processed_pseudogene Interval_23007 chr11 18875297 18878433 + 0 NA Intergenic Intergenic 10926 ENSMUSG00000104184.1 ENSMUSG00000104184 ENSMUST00000194952 Gm37818 TEC Interval_139805 chr6 108866425 108866639 + 0 NA Intergenic Intergenic -15472 ENSMUSG00000107751.1 ENSMUSG00000107751 ENSMUST00000203838 Gm6749 processed_pseudogene Interval_10704 chr1 173361629 173361948 + 0 NA intron (ENSMUSG00000037860.15, intron 1 of 11) protein_coding-intron (ENSMUSG00000005338.13, intron 1 of 9) 5860 ENSMUSG00000005338.13 ENSMUSG00000005338 ENSMUST00000126963 Cadm3 protein_coding Interval_24397 chr11 32961562 32962299 + 0 NA Intergenic Intergenic 22369 ENSMUSG00000077836.2 ENSMUSG00000077836 ENSMUST00000104646 Gm26052 miRNA Interval_142984 chr6 148006065 148006347 + 0 NA TTS (ENSMUSG00000086777.3) antisense-TTS (ENSMUSG00000086777.3) 41133 ENSMUSG00000086777.3 ENSMUSG00000086777 ENSMUST00000149815 Far2os2 antisense Interval_72957 chr17 33804146 33804978 + 0 NA Intergenic Intergenic -17458 ENSMUSG00000042099.16 ENSMUSG00000042099 ENSMUST00000174608 Kank3 protein_coding Interval_158097 chr8 78702878 78703991 + 0 NA intron (ENSMUSG00000031684.11, intron 6 of 7) protein_coding-intron (ENSMUSG00000031684.11, intron 6 of 7) 71111 ENSMUSG00000112190.1 ENSMUSG00000112190 ENSMUST00000218647 Gm47209 unitary_pseudogene Interval_12180 chr1 190599508 190599816 + 0 NA intron (ENSMUSG00000103963.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000103963.1, intron 1 of 1) 5336 ENSMUSG00000103963.1 ENSMUSG00000103963 ENSMUST00000191893 Gm30932 lincRNA Interval_94091 chr2 83771256 83771655 + 0 NA intron (ENSMUSG00000027087.11, intron 10 of 27) protein_coding-intron (ENSMUSG00000027087.11, intron 12 of 29) -11590 ENSMUSG00000085335.1 ENSMUSG00000085335 ENSMUST00000152569 Gm13684 processed_transcript Interval_143786 chr7 16299552 16300103 + 0 NA Intergenic Intergenic -8566 ENSMUSG00000002083.13 ENSMUSG00000002083 ENSMUST00000147267 Bbc3 protein_coding Interval_59520 chr15 54938478 54938729 + 0 NA intron (ENSMUSG00000022425.16, intron 1 of 2) protein_coding-intron (ENSMUSG00000022425.16, intron 1 of 2) -13467 ENSMUSG00000097286.2 ENSMUSG00000097286 ENSMUST00000181704 Gm26684 bidirectional_promoter_lncRNA Interval_43202 chr13 25145461 25145980 + 0 NA intron (ENSMUSG00000035910.15, intron 7 of 9) protein_coding-intron (ENSMUSG00000035910.15, intron 7 of 9) -14656 ENSMUSG00000082667.1 ENSMUSG00000082667 ENSMUST00000118813 Gm11348 processed_pseudogene Interval_77246 chr17 87558089 87560021 + 0 NA TTS (ENSMUSG00000117414.1) lincRNA-TTS (ENSMUSG00000117414.1) 12599 ENSMUSG00000117414.1 ENSMUSG00000117414 ENSMUST00000234992 Gm46587 lincRNA Interval_82325 chr18 70671041 70671309 + 0 NA Intergenic Intergenic -23138 ENSMUSG00000117810.1 ENSMUSG00000117810 ENSMUST00000236578 Gm8934 processed_pseudogene Interval_114943 chr4 87412558 87414072 + 0 NA Intergenic Intergenic -18957 ENSMUSG00000093065.1 ENSMUSG00000093065 ENSMUST00000175324 Gm23154 miRNA Interval_155395 chr8 33221684 33223666 + 0 NA Intergenic Intergenic -30379 ENSMUSG00000083557.1 ENSMUSG00000083557 ENSMUST00000119347 Gm6877 processed_pseudogene Interval_24192 chr11 31137909 31138242 + 0 NA Intergenic Intergenic 18072 ENSMUSG00000082049.1 ENSMUSG00000082049 ENSMUST00000120846 Gm12105 processed_pseudogene Interval_67574 chr16 51044495 51044917 + 0 NA Intergenic Intergenic -6424 ENSMUSG00000116706.1 ENSMUSG00000116706 ENSMUST00000231893 Gm32431 lincRNA Interval_84948 chr19 19605351 19606287 + 0 NA Intergenic Intergenic 270744 ENSMUSG00000118167.1 ENSMUSG00000118167 ENSMUST00000235148 Gm50216 lincRNA Interval_138808 chr6 92077305 92077728 + 0 NA Intergenic Intergenic 10087 ENSMUSG00000034037.14 ENSMUSG00000034037 ENSMUST00000130369 Fgd5 protein_coding Interval_76002 chr17 74283894 74284159 + 0 NA intron (ENSMUSG00000058704.9, intron 1 of 8) protein_coding-intron (ENSMUSG00000058704.9, intron 1 of 8) 10837 ENSMUSG00000058704.9 ENSMUSG00000058704 ENSMUST00000232861 Memo1 protein_coding Interval_44761 chr13 48331786 48332285 + 0 NA Intergenic Intergenic 19365 ENSMUSG00000114881.1 ENSMUSG00000114881 ENSMUST00000225756 Gm8588 processed_pseudogene Interval_163303 chr9 20726254 20728774 + 0 NA promoter-TSS (ENSMUSG00000032172.8) protein_coding-promoter-TSS (ENSMUSG00000032172.8) -577 ENSMUSG00000032172.8 ENSMUSG00000032172 ENSMUST00000215039 Olfm2 protein_coding Interval_85659 chr19 29406453 29406890 + 0 NA Intergenic Intergenic -15388 ENSMUSG00000016498.10 ENSMUSG00000016498 ENSMUST00000235164 Pdcd1lg2 protein_coding Interval_131855 chr5 140396409 140397109 + 0 NA Intergenic Intergenic -29649 ENSMUSG00000029560.12 ENSMUSG00000029560 ENSMUST00000196020 Snx8 protein_coding Interval_79189 chr18 25537975 25538883 + 0 NA intron (ENSMUSG00000024268.16, intron 2 of 5) protein_coding-intron (ENSMUSG00000024268.16, intron 2 of 12) -37190 ENSMUSG00000024268.16 ENSMUSG00000024268 ENSMUST00000224143 Celf4 protein_coding Interval_170379 chr9 107565810 107566250 + 0 NA TTS (ENSMUSG00000010054.4) protein_coding-TTS (ENSMUSG00000010054.4) 901 ENSMUSG00000097099.2 ENSMUSG00000097099 ENSMUST00000192051 Gm9917 antisense Interval_154365 chr8 15010774 15012454 + 0 NA intron (ENSMUSG00000055675.6, intron 1 of 1) protein_coding-intron (ENSMUSG00000055675.6, intron 1 of 1) 308 ENSMUSG00000055675.6 ENSMUSG00000055675 ENSMUST00000184243 Kbtbd11 protein_coding Interval_81221 chr18 56583775 56584088 + 0 NA intron (ENSMUSG00000008301.11, intron 3 of 4) protein_coding-intron (ENSMUSG00000008301.11, intron 3 of 4) -6811 ENSMUSG00000032900.15 ENSMUSG00000032900 ENSMUST00000235602 Tex43 protein_coding Interval_63905 chr16 4497291 4498269 + 0 NA intron (ENSMUSG00000022519.14, intron 1 of 1) protein_coding-intron (ENSMUSG00000022519.14, intron 1 of 1) -41528 ENSMUSG00000083585.1 ENSMUSG00000083585 ENSMUST00000122114 Gm15885 processed_pseudogene Interval_4584 chr1 75251406 75251949 + 0 NA promoter-TSS (ENSMUSG00000101840.1) antisense-promoter-TSS (ENSMUSG00000101840.1) -645 ENSMUSG00000101840.1 ENSMUSG00000101840 ENSMUST00000191154 Gm28294 antisense Interval_118321 chr4 130292257 130292736 + 0 NA Intergenic Intergenic -16099 ENSMUSG00000028773.8 ENSMUSG00000028773 ENSMUST00000070532 Fabp3 protein_coding Interval_13597 chr10 20116656 20117170 + 0 NA intron (ENSMUSG00000071369.11, intron 20 of 28) protein_coding-intron (ENSMUSG00000071369.11, intron 21 of 29) -7888 ENSMUSG00000071369.11 ENSMUSG00000071369 ENSMUST00000156369 Map3k5 protein_coding Interval_20168 chr10 115371272 115371518 + 0 NA exon (ENSMUSG00000020137.5, exon 2 of 2) protein_coding-exon (ENSMUSG00000020137.5, exon 2 of 2) -8902 ENSMUSG00000069520.6 ENSMUSG00000069520 ENSMUST00000219597 Tmem19 protein_coding Interval_96952 chr2 129833175 129834244 + 0 NA Intergenic Intergenic 33192 ENSMUSG00000037885.18 ENSMUSG00000037885 ENSMUST00000166282 Stk35 protein_coding Interval_99380 chr2 160451187 160452337 + 0 NA Intergenic Intergenic -84697 ENSMUSG00000074622.4 ENSMUSG00000074622 ENSMUST00000099126 Mafb protein_coding Interval_21326 chr10 127974459 127975091 + 0 NA Intergenic Intergenic 13219 ENSMUSG00000112446.1 ENSMUSG00000112446 ENSMUST00000218406 Gm47949 processed_pseudogene Interval_29432 chr11 83985373 83986147 + 0 NA intron (ENSMUSG00000034940.15, intron 2 of 4) protein_coding-intron (ENSMUSG00000034940.15, intron 6 of 21) -33441 ENSMUSG00000034940.15 ENSMUSG00000034940 ENSMUST00000132887 Synrg protein_coding Interval_72033 chr17 27655223 27655990 + 0 NA promoter-TSS (ENSMUSG00000040276.15) protein_coding-promoter-TSS (ENSMUSG00000040276.15) 18 ENSMUSG00000040276.15 ENSMUSG00000040276 ENSMUST00000231854 Pacsin1 protein_coding Interval_142326 chr6 140652004 140652439 + 0 NA TTS (ENSMUSG00000030232.18) protein_coding-TTS (ENSMUSG00000030232.18) 15483 ENSMUSG00000030232.18 ENSMUSG00000030232 ENSMUST00000160772 Aebp2 protein_coding Interval_113884 chr4 59569311 59569927 + 0 NA Intergenic Intergenic -20367 ENSMUSG00000028382.15 ENSMUSG00000028382 ENSMUST00000140925 Ptbp3 protein_coding Interval_41687 chr12 117751082 117752439 + 0 NA intron (ENSMUSG00000041992.9, intron 14 of 15) protein_coding-intron (ENSMUSG00000041992.9, intron 26 of 27) 27788 ENSMUSG00000113840.1 ENSMUSG00000113840 ENSMUST00000223173 Gm18955 processed_pseudogene Interval_124182 chr5 39410949 39411644 + 0 NA Intergenic Intergenic -9051 ENSMUSG00000107030.1 ENSMUSG00000107030 ENSMUST00000201965 Gm5291 processed_pseudogene Interval_63455 chr15 101187964 101188212 + 0 NA intron (ENSMUSG00000000532.11, intron 1 of 8) protein_coding-intron (ENSMUSG00000000532.11, intron 1 of 8) -5781 ENSMUSG00000106563.1 ENSMUSG00000106563 ENSMUST00000199512 Mir6962 miRNA Interval_127019 chr5 99640316 99640720 + 0 NA intron (ENSMUSG00000089809.9, intron 1 of 16) protein_coding-intron (ENSMUSG00000089809.9, intron 1 of 1) 14682 ENSMUSG00000090146.1 ENSMUSG00000090146 ENSMUST00000159244 4930405H06Rik antisense Interval_11691 chr1 184712273 184712650 + 0 NA promoter-TSS (ENSMUSG00000092578.1) lincRNA-promoter-TSS (ENSMUSG00000092578.1) -36 ENSMUSG00000092578.1 ENSMUSG00000092578 ENSMUST00000172500 4930488B22Rik lincRNA Interval_157642 chr8 71971395 71972562 + 0 NA TTS (ENSMUSG00000052446.17) protein_coding-TTS (ENSMUSG00000052446.17) -11925 ENSMUSG00000110529.1 ENSMUSG00000110529 ENSMUST00000212022 Gm45694 TEC Interval_104721 chr3 69747475 69747749 + 0 NA intron (ENSMUSG00000027787.14, intron 1 of 2) protein_coding-intron (ENSMUSG00000027787.14, intron 14 of 15) 23376 ENSMUSG00000027787.14 ENSMUSG00000027787 ENSMUST00000150210 Nmd3 protein_coding Interval_109559 chr3 144446537 144447430 + 0 NA intron (ENSMUSG00000040151.9, intron 4 of 6) protein_coding-intron (ENSMUSG00000040151.9, intron 4 of 6) -19311 ENSMUSG00000106416.1 ENSMUSG00000106416 ENSMUST00000198953 Gm5857 processed_pseudogene Interval_140821 chr6 121635478 121636663 + 0 NA promoter-TSS (ENSMUSG00000030111.9) protein_coding-promoter-TSS (ENSMUSG00000030111.9) 694 ENSMUSG00000030111.9 ENSMUSG00000030111 ENSMUST00000203413 A2m protein_coding Interval_20031 chr10 112278515 112278752 + 0 NA intron (ENSMUSG00000035681.7, intron 2 of 4) protein_coding-intron (ENSMUSG00000035681.7, intron 2 of 4) -47492 ENSMUSG00000112564.1 ENSMUSG00000112564 ENSMUST00000219794 Gm47419 antisense Interval_118719 chr4 133352553 133354270 + 0 NA promoter-TSS (ENSMUSG00000037622.14) protein_coding-promoter-TSS (ENSMUSG00000037622.14) -16365 ENSMUSG00000092745.1 ENSMUSG00000092745 ENSMUST00000175004 Mir5122 miRNA Interval_65259 chr16 20959290 20959497 + 0 NA Intergenic Intergenic 1749 ENSMUSG00000116732.1 ENSMUSG00000116732 ENSMUST00000232658 Gm18769 processed_pseudogene Interval_18077 chr10 82137158 82137635 + 0 NA promoter-TSS (ENSMUSG00000078435.5) protein_coding-promoter-TSS (ENSMUSG00000078435.5) 9383 ENSMUSG00000078435.5 ENSMUSG00000078435 ENSMUST00000105314 AU041133 protein_coding Interval_69044 chr16 90277765 90278314 + 0 NA intron (ENSMUSG00000022983.16, intron 1 of 19) protein_coding-intron (ENSMUSG00000022983.16, intron 1 of 19) 6464 ENSMUSG00000022983.16 ENSMUSG00000022983 ENSMUST00000231776 Scaf4 protein_coding Interval_43613 chr13 34115721 34115928 + 0 NA Intergenic Intergenic -2552 ENSMUSG00000113591.1 ENSMUSG00000113591 ENSMUST00000222745 4930447K03Rik processed_transcript Interval_75766 chr17 71158961 71160030 + 0 NA intron (ENSMUSG00000117315.1, intron 1 of 3) lincRNA-intron (ENSMUSG00000117315.1, intron 1 of 3) -5475 ENSMUSG00000117276.1 ENSMUSG00000117276 ENSMUST00000233369 Gm49910 processed_pseudogene Interval_37949 chr12 73267844 73268154 + 0 NA intron (ENSMUSG00000021103.12, intron 6 of 6) protein_coding-intron (ENSMUSG00000021103.12, intron 7 of 7) 18711 ENSMUSG00000034442.11 ENSMUSG00000034442 ENSMUST00000221189 Trmt5 protein_coding Interval_68996 chr16 90010136 90010390 + 0 NA intron (ENSMUSG00000002489.16, intron 2 of 11) protein_coding-intron (ENSMUSG00000002489.16, intron 2 of 11) -79720 ENSMUSG00000116536.1 ENSMUSG00000116536 ENSMUST00000232386 Gm2805 processed_pseudogene Interval_93169 chr2 70805543 70806642 + 0 NA intron (ENSMUSG00000041997.16, intron 1 of 21) protein_coding-intron (ENSMUSG00000041997.16, intron 1 of 19) -50597 ENSMUSG00000082303.1 ENSMUSG00000082303 ENSMUST00000120668 Gm13633 processed_pseudogene Interval_140089 chr6 114022595 114022924 + 0 NA intron (ENSMUSG00000087083.2, intron 1 of 2) protein_coding-intron (ENSMUSG00000030302.16, intron 1 of 21) 17970 ENSMUSG00000087083.2 ENSMUSG00000087083 ENSMUST00000138670 Gm15083 antisense Interval_154829 chr8 23936932 23937217 + 0 NA intron (ENSMUSG00000037492.16, intron 6 of 7) protein_coding-intron (ENSMUSG00000037492.16, intron 5 of 6) -184309 ENSMUSG00000109158.1 ENSMUSG00000109158 ENSMUST00000209073 Gm45166 TEC Interval_50488 chr14 14012140 14013698 + 0 NA promoter-TSS (ENSMUSG00000021738.5) protein_coding-promoter-TSS (ENSMUSG00000021738.5) -225 ENSMUSG00000021738.5 ENSMUSG00000021738 ENSMUST00000224315 Atxn7 protein_coding Interval_162762 chr9 8700520 8701445 + 0 NA intron (ENSMUSG00000111602.1, intron 3 of 4) lincRNA-intron (ENSMUSG00000111602.1, intron 3 of 4) 40006 ENSMUSG00000111602.1 ENSMUSG00000111602 ENSMUST00000214779 Gm32014 lincRNA Interval_125557 chr5 70862732 70863064 + 0 NA Intergenic Intergenic -20584 ENSMUSG00000001260.10 ENSMUSG00000001260 ENSMUST00000200126 Gabrg1 protein_coding Interval_159230 chr8 91993675 91993958 + 0 NA Intergenic Intergenic -1947 ENSMUSG00000109696.1 ENSMUSG00000109696 ENSMUST00000210361 Gm36670 lincRNA Interval_1317 chr1 20495971 20496193 + 0 NA intron (ENSMUSG00000043760.16, intron 35 of 66) protein_coding-intron (ENSMUSG00000043760.16, intron 35 of 66) -51170 ENSMUSG00000070175.1 ENSMUSG00000070175 ENSMUST00000093665 Gm24162 snRNA Interval_61016 chr15 78796485 78796762 + 0 NA intron (ENSMUSG00000033170.14, intron 3 of 19) protein_coding-intron (ENSMUSG00000033170.14, intron 4 of 20) 6046 ENSMUSG00000033170.14 ENSMUSG00000033170 ENSMUST00000071115 Card10 protein_coding Interval_9133 chr1 153925039 153925308 + 0 NA Intergenic Intergenic -14053 ENSMUSG00000100014.1 ENSMUSG00000100014 ENSMUST00000185385 Gm29290 lincRNA Interval_149397 chr7 98125320 98126586 + 0 NA intron (ENSMUSG00000035547.14, intron 10 of 12) protein_coding-intron (ENSMUSG00000035547.14, intron 10 of 12) 19549 ENSMUSG00000074006.3 ENSMUSG00000074006 ENSMUST00000098281 Omp protein_coding Interval_54344 chr14 67827778 67828727 + 0 NA intron (ENSMUSG00000044447.5, intron 12 of 17) protein_coding-intron (ENSMUSG00000044447.5, intron 12 of 51) 31493 ENSMUSG00000098866.1 ENSMUSG00000098866 ENSMUST00000183732 Mir6539 miRNA Interval_89192 chr2 17970376 17972009 + 0 NA Intergenic Intergenic 25766 ENSMUSG00000062651.4 ENSMUSG00000062651 ENSMUST00000105001 H2al2a protein_coding Interval_124994 chr5 63528302 63528515 + 0 NA Intergenic Intergenic 122486 ENSMUSG00000104868.1 ENSMUSG00000104868 ENSMUST00000067917 Gm9954 TEC Interval_31308 chr11 99574046 99574513 + 0 NA Intergenic Intergenic 6737 ENSMUSG00000047253.4 ENSMUSG00000047253 ENSMUST00000054532 Krtap1-5 protein_coding Interval_137721 chr6 81659991 81661399 + 0 NA Intergenic Intergenic 22384 ENSMUSG00000065212.1 ENSMUSG00000065212 ENSMUST00000083278 Gm26264 snRNA Interval_91384 chr2 38423937 38425156 + 0 NA intron (ENSMUSG00000085950.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000085950.1, intron 1 of 1) 544 ENSMUSG00000085950.1 ENSMUSG00000085950 ENSMUST00000146404 Gm13589 lincRNA Interval_98376 chr2 151941496 151942303 + 0 NA intron (ENSMUSG00000027460.7, intron 7 of 8) protein_coding-intron (ENSMUSG00000027460.7, intron 7 of 8) 8742 ENSMUSG00000087004.1 ENSMUSG00000087004 ENSMUST00000142642 Gm14154 antisense Interval_157096 chr8 65109094 65110861 + 0 NA intron (ENSMUSG00000074300.4, intron 1 of 2) protein_coding-intron (ENSMUSG00000074300.4, intron 1 of 2) -15934 ENSMUSG00000109620.1 ENSMUSG00000109620 ENSMUST00000211412 Gm48810 processed_pseudogene Interval_165921 chr9 54690922 54692101 + 0 NA promoter-TSS (ENSMUSG00000110867.1) processed_pseudogene-promoter-TSS (ENSMUSG00000110867.1) -9 ENSMUSG00000110867.1 ENSMUSG00000110867 ENSMUST00000213307 Gm7368 processed_pseudogene Interval_171653 chr9 119962362 119963733 + 0 NA TTS (ENSMUSG00000032514.11) protein_coding-TTS (ENSMUSG00000032514.11) 1429 ENSMUSG00000032514.11 ENSMUSG00000032514 ENSMUST00000161967 Ttc21a protein_coding Interval_174684 chrX 162887791 162889191 + 0 NA promoter-TSS (ENSMUSG00000031357.3) protein_coding-promoter-TSS (ENSMUSG00000031357.3) 6663 ENSMUSG00000081917.1 ENSMUSG00000081917 ENSMUST00000117703 Gm15209 processed_pseudogene Interval_170970 chr9 113397271 113398546 + 0 NA Intergenic Intergenic -5567 ENSMUSG00000087817.1 ENSMUSG00000087817 ENSMUST00000157192 Gm22492 misc_RNA Interval_124501 chr5 49524167 49525132 + 0 NA exon (ENSMUSG00000029088.16, exon 1 of 9) protein_coding-exon (ENSMUSG00000029088.16, exon 1 of 9) -5712 ENSMUSG00000105771.1 ENSMUSG00000105771 ENSMUST00000196567 2900064K03Rik TEC Interval_14878 chr10 40718544 40718763 + 0 NA intron (ENSMUSG00000045555.3, intron 1 of 4) protein_coding-intron (ENSMUSG00000045555.3, intron 1 of 4) 35371 ENSMUSG00000045555.3 ENSMUSG00000045555 ENSMUST00000058747 Mettl24 protein_coding Interval_40424 chr12 104794736 104796078 + 0 NA intron (ENSMUSG00000021097.15, intron 4 of 14) protein_coding-intron (ENSMUSG00000021097.15, intron 4 of 12) -61964 ENSMUSG00000021101.2 ENSMUSG00000021101 ENSMUST00000021520 4930408O17Rik lincRNA Interval_64607 chr16 13639691 13640503 + 0 NA intron (ENSMUSG00000022685.9, intron 14 of 23) protein_coding-intron (ENSMUSG00000022685.9, intron 13 of 23) 28041 ENSMUSG00000022685.9 ENSMUSG00000022685 ENSMUST00000229251 Parn protein_coding Interval_46412 chr13 64915903 64916102 + 0 NA Intergenic Intergenic -1452 ENSMUSG00000056223.8 ENSMUSG00000056223 ENSMUST00000221202 Spata31 protein_coding Interval_43052 chr13 23500071 23501108 + 0 NA Intergenic Intergenic -11759 ENSMUSG00000053216.15 ENSMUSG00000053216 ENSMUST00000110432 Btn2a2 protein_coding Interval_171824 chr9 121460193 121460718 + 0 NA exon (ENSMUSG00000032536.12, exon 14 of 16) protein_coding-exon (ENSMUSG00000032536.12, exon 14 of 16) 34055 ENSMUSG00000032532.7 ENSMUSG00000032532 ENSMUST00000217581 Cck protein_coding Interval_7463 chr1 131561937 131562889 + 0 NA Intergenic Intergenic 34510 ENSMUSG00000055184.4 ENSMUSG00000055184 ENSMUST00000068613 Fam72a protein_coding Interval_62980 chr15 98471870 98472076 + 0 NA exon (ENSMUSG00000108728.4, exon 2 of 3) protein_coding-exon (ENSMUSG00000108728.4, exon 2 of 3) 2077 ENSMUSG00000108728.4 ENSMUSG00000108728 ENSMUST00000216180 OR5BS1P protein_coding Interval_51313 chr14 26329879 26330431 + 0 NA Intergenic Intergenic -5201 ENSMUSG00000114753.1 ENSMUSG00000114753 ENSMUST00000225697 Gm34059 lincRNA Interval_81819 chr18 64991050 64992286 + 0 NA intron (ENSMUSG00000117895.1, intron 1 of 2) protein_coding-intron (ENSMUSG00000024589.18, intron 1 of 29) 9507 ENSMUSG00000117895.1 ENSMUSG00000117895 ENSMUST00000237218 Gm50368 antisense Interval_97001 chr2 130400143 130400383 + 0 NA promoter-TSS (ENSMUSG00000082985.2) processed_pseudogene-promoter-TSS (ENSMUSG00000082985.2) -174 ENSMUSG00000082985.2 ENSMUSG00000082985 ENSMUST00000120139 Gm14042 processed_pseudogene Interval_96569 chr2 125799938 125801310 + 0 NA Intergenic Intergenic -40310 ENSMUSG00000035093.16 ENSMUSG00000035093 ENSMUST00000136450 Secisbp2l protein_coding Interval_52798 chr14 50649151 50649458 + 0 NA intron (ENSMUSG00000058188.3, intron 1 of 1) protein_coding-intron (ENSMUSG00000058188.3, intron 1 of 1) 2221 ENSMUSG00000058188.3 ENSMUSG00000058188 ENSMUST00000080616 Olfr746 protein_coding Interval_20990 chr10 123075762 123076899 + 0 NA promoter-TSS (ENSMUSG00000034602.15) protein_coding-promoter-TSS (ENSMUSG00000034602.15) -46011 ENSMUSG00000034602.15 ENSMUSG00000034602 ENSMUST00000219203 Mon2 protein_coding Interval_72542 chr17 30601974 30603023 + 0 NA promoter-TSS (ENSMUSG00000118382.1) transcribed_processed_pseudogene-promoter-TSS (ENSMUSG00000118382.1) -607 ENSMUSG00000118382.1 ENSMUSG00000118382 ENSMUST00000235258 Gm8373 transcribed_processed_pseudogene Interval_115092 chr4 89560257 89560871 + 0 NA Intergenic Intergenic 115345 ENSMUSG00000098669.1 ENSMUSG00000098669 ENSMUST00000183666 Gm27580 misc_RNA Interval_58423 chr15 34413216 34413804 + 0 NA intron (ENSMUSG00000022324.15, intron 10 of 13) protein_coding-intron (ENSMUSG00000022324.15, intron 10 of 18) 27412 ENSMUSG00000065899.1 ENSMUSG00000065899 ENSMUST00000083965 Gm24523 snoRNA Interval_125267 chr5 65776282 65776887 + 0 NA promoter-TSS (ENSMUSG00000089337.1) snoRNA-promoter-TSS (ENSMUSG00000089337.1) -430 ENSMUSG00000089337.1 ENSMUSG00000089337 ENSMUST00000158712 Gm24346 snoRNA Interval_168379 chr9 79818804 79819030 + 0 NA exon (ENSMUSG00000034898.17, exon 5 of 6) protein_coding-exon (ENSMUSG00000034898.17, exon 5 of 6) 19470 ENSMUSG00000092565.1 ENSMUSG00000092565 ENSMUST00000174028 Gm20477 processed_pseudogene Interval_155782 chr8 37553805 37554556 + 0 NA intron (ENSMUSG00000039539.13, intron 5 of 9) protein_coding-intron (ENSMUSG00000039539.13, intron 5 of 7) -153160 ENSMUSG00000109820.1 ENSMUSG00000109820 ENSMUST00000210980 Gm45654 processed_pseudogene Interval_72628 chr17 31157825 31159361 + 0 NA promoter-TSS (ENSMUSG00000086010.8) antisense-promoter-TSS (ENSMUSG00000086010.8) -456 ENSMUSG00000086010.8 ENSMUSG00000086010 ENSMUST00000236237 Gm15318 antisense Interval_166657 chr9 61649580 61650002 + 0 NA Intergenic Intergenic -113293 ENSMUSG00000111739.1 ENSMUSG00000111739 ENSMUST00000213572 Gm47241 processed_pseudogene Interval_5507 chr1 89407861 89408285 + 0 NA Intergenic Intergenic -1940 ENSMUSG00000099938.1 ENSMUSG00000099938 ENSMUST00000186258 C030007H22Rik lincRNA Interval_147429 chr7 66969875 66970041 + 0 NA TTS (ENSMUSG00000058145.16) protein_coding-TTS (ENSMUSG00000058145.16) -8040 ENSMUSG00000109079.1 ENSMUSG00000109079 ENSMUST00000207830 Gm44755 TEC Interval_56533 chr14 120102037 120103974 + 0 NA intron (ENSMUSG00000115146.1, intron 7 of 8) lincRNA-intron (ENSMUSG00000115146.1, intron 7 of 8) 25495 ENSMUSG00000115133.1 ENSMUSG00000115133 ENSMUST00000226914 Gm20167 processed_pseudogene Interval_143176 chr7 4172190 4172563 + 0 NA Intergenic Intergenic 4859 ENSMUSG00000082782.1 ENSMUSG00000082782 ENSMUST00000118965 Gm5319 processed_pseudogene Interval_53803 chr14 61971334 61971761 + 0 NA Intergenic Intergenic -40772 ENSMUSG00000114368.1 ENSMUSG00000114368 ENSMUST00000224570 Gm47953 processed_pseudogene Interval_165823 chr9 53570120 53571320 + 0 NA exon (ENSMUSG00000033054.7, exon 17 of 18) protein_coding-exon (ENSMUSG00000033054.7, exon 17 of 18) 7186 ENSMUSG00000033054.7 ENSMUSG00000033054 ENSMUST00000148336 Npat protein_coding Interval_41041 chr12 110766631 110767121 + 0 NA intron (ENSMUSG00000037957.14, intron 1 of 4) protein_coding-intron (ENSMUSG00000037957.14, intron 1 of 2) 28667 ENSMUSG00000037957.14 ENSMUSG00000037957 ENSMUST00000194118 Wdr20 protein_coding Interval_16615 chr10 65829454 65829991 + 0 NA Intergenic Intergenic -57523 ENSMUSG00000112720.1 ENSMUSG00000112720 ENSMUST00000218592 Gm19116 processed_pseudogene Interval_80085 chr18 37435492 37436017 + 0 NA TTS (ENSMUSG00000103483.1) processed_pseudogene-TTS (ENSMUSG00000103483.1) 133 ENSMUSG00000043458.5 ENSMUSG00000043458 ENSMUST00000055495 Pcdhb12 protein_coding Interval_90324 chr2 29775834 29776059 + 0 NA TTS (ENSMUSG00000039826.13) protein_coding-TTS (ENSMUSG00000039826.13) 11676 ENSMUSG00000039826.13 ENSMUSG00000039826 ENSMUST00000175644 Trub2 protein_coding Interval_145449 chr7 34818490 34820167 + 0 NA Intergenic Intergenic -65516 ENSMUSG00000060402.8 ENSMUSG00000060402 ENSMUST00000205390 Chst8 protein_coding Interval_89441 chr2 20691134 20692429 + 0 NA intron (ENSMUSG00000036617.17, intron 5 of 5) protein_coding-intron (ENSMUSG00000036617.17, intron 4 of 18) 21453 ENSMUSG00000086418.1 ENSMUSG00000086418 ENSMUST00000137186 Gm13362 antisense Interval_107512 chr3 108225723 108227438 + 0 NA promoter-TSS (ENSMUSG00000027887.11) protein_coding-promoter-TSS (ENSMUSG00000027887.11) 63 ENSMUSG00000027887.11 ENSMUSG00000027887 ENSMUST00000156371 Sypl2 protein_coding Interval_44560 chr13 46037323 46037770 + 0 NA Intergenic Intergenic -23051 ENSMUSG00000113860.1 ENSMUSG00000113860 ENSMUST00000222657 Gm45949 lincRNA Interval_63475 chr15 101293114 101293857 + 0 NA exon (ENSMUSG00000075408.5, exon 2 of 3) protein_coding-exon (ENSMUSG00000075408.5, exon 2 of 3) 253 ENSMUSG00000075408.5 ENSMUSG00000075408 ENSMUST00000191426 Smim41 protein_coding Interval_174286 chrX 143393692 143394489 + 0 NA promoter-TSS (ENSMUSG00000031283.16) protein_coding-promoter-TSS (ENSMUSG00000031283.16) -189 ENSMUSG00000031283.16 ENSMUSG00000031283 ENSMUST00000207415 Chrdl1 protein_coding Interval_69861 chr16 97652526 97652953 + 0 NA Intergenic Intergenic -85402 ENSMUSG00000000385.8 ENSMUSG00000000385 ENSMUST00000232141 Tmprss2 protein_coding Interval_89465 chr2 20811336 20812207 + 0 NA Intergenic Intergenic 48025 ENSMUSG00000036591.16 ENSMUSG00000036591 ENSMUST00000173654 Arhgap21 protein_coding Interval_95045 chr2 103439425 103440157 + 0 NA intron (ENSMUSG00000027186.15, intron 3 of 6) protein_coding-intron (ENSMUSG00000027186.15, intron 3 of 6) 28103 ENSMUSG00000027186.15 ENSMUSG00000027186 ENSMUST00000152055 Elf5 protein_coding Interval_50185 chr14 8880431 8880779 + 0 NA Intergenic Intergenic -20555 ENSMUSG00000114413.1 ENSMUSG00000114413 ENSMUST00000223780 Gm48364 processed_pseudogene Interval_76787 chr17 84063624 84064135 + 0 NA Intergenic Intergenic -14781 ENSMUSG00000117571.1 ENSMUSG00000117571 ENSMUST00000234076 4933433H22Rik lincRNA Interval_7362 chr1 130490766 130491777 + 0 NA intron (ENSMUSG00000085526.1, intron 1 of 4) antisense-intron (ENSMUSG00000085526.1, intron 1 of 4) 17528 ENSMUSG00000103751.1 ENSMUSG00000103751 ENSMUST00000193111 Gm37283 TEC Interval_44654 chr13 46960054 46960489 + 0 NA Intergenic Intergenic -14578 ENSMUSG00000114449.1 ENSMUSG00000114449 ENSMUST00000224563 Gm48325 processed_pseudogene Interval_92156 chr2 54565235 54565716 + 0 NA TTS (ENSMUSG00000089272.1) snoRNA-TTS (ENSMUSG00000089272.1) 661 ENSMUSG00000089272.1 ENSMUSG00000089272 ENSMUST00000158647 Gm24549 snoRNA Interval_62228 chr15 88982387 88983407 + 0 NA promoter-TSS (ENSMUSG00000015365.15) protein_coding-promoter-TSS (ENSMUSG00000015365.15) -12 ENSMUSG00000015365.15 ENSMUSG00000015365 ENSMUST00000143030 Mov10l1 protein_coding Interval_69975 chr17 3709803 3710021 + 0 NA Intergenic Intergenic -13651 ENSMUSG00000023802.4 ENSMUSG00000023802 ENSMUST00000115800 Nox3 protein_coding Interval_71227 chr17 21406654 21406986 + 0 NA Intergenic Intergenic -11703 ENSMUSG00000116633.1 ENSMUSG00000116633 ENSMUST00000232365 Gm18519 processed_pseudogene Interval_82179 chr18 68440223 68441028 + 0 NA Intergenic Intergenic 7832 ENSMUSG00000118288.1 ENSMUSG00000118288 ENSMUST00000236693 Gm50258 processed_pseudogene Interval_172581 chrX 37074365 37074960 + 0 NA Intergenic Intergenic -2400 ENSMUSG00000093059.2 ENSMUSG00000093059 ENSMUST00000175318 Gm24809 misc_RNA Interval_139821 chr6 109229921 109230145 + 0 NA Intergenic Intergenic 15791 ENSMUSG00000107641.1 ENSMUSG00000107641 ENSMUST00000205246 Gm32858 processed_pseudogene Interval_32127 chr11 105379986 105380505 + 0 NA intron (ENSMUSG00000086487.1, intron 2 of 3) protein_coding-intron (ENSMUSG00000078627.9, intron 9 of 11) 16993 ENSMUSG00000086487.1 ENSMUSG00000086487 ENSMUST00000153672 Gm11638 processed_transcript Interval_124626 chr5 52546834 52547553 + 0 NA intron (ENSMUSG00000039252.11, intron 5 of 6) protein_coding-intron (ENSMUSG00000039252.11, intron 5 of 6) -1849 ENSMUSG00000104974.1 ENSMUSG00000104974 ENSMUST00000197351 Gm43686 TEC Interval_75922 chr17 73086733 73087072 + 0 NA Intergenic Intergenic -39525 ENSMUSG00000054469.14 ENSMUSG00000054469 ENSMUST00000134149 Lclat1 protein_coding Interval_45044 chr13 51704755 51705047 + 0 NA promoter-TSS (ENSMUSG00000021451.16) protein_coding-promoter-TSS (ENSMUSG00000021451.16) 53104 ENSMUSG00000035139.14 ENSMUSG00000035139 ENSMUST00000153877 Secisbp2 protein_coding Interval_21765 chr11 4223312 4224007 + 0 NA Intergenic Intergenic 5434 ENSMUSG00000020424.3 ENSMUSG00000020424 ENSMUST00000020699 Castor1 protein_coding Interval_49584 chr13 113223958 113224791 + 0 NA intron (ENSMUSG00000042385.14, intron 1 of 5) protein_coding-intron (ENSMUSG00000042385.14, intron 1 of 5) 14715 ENSMUSG00000042379.8 ENSMUSG00000042379 ENSMUST00000038144 Esm1 protein_coding Interval_155337 chr8 31799845 31800537 + 0 NA Intergenic Intergenic -60431 ENSMUSG00000093862.2 ENSMUSG00000093862 ENSMUST00000178878 Gm5117 processed_pseudogene Interval_28938 chr11 79385459 79386444 + 0 NA intron (ENSMUSG00000020716.16, intron 2 of 30) protein_coding-intron (ENSMUSG00000020716.16, intron 2 of 57) -13721 ENSMUSG00000082304.1 ENSMUSG00000082304 ENSMUST00000119771 Gm11198 processed_pseudogene Interval_173430 chrX 93299103 93299723 + 0 NA Intergenic Intergenic 12968 ENSMUSG00000035277.15 ENSMUSG00000035277 ENSMUST00000113947 Arx protein_coding Interval_96305 chr2 121427005 121427306 + 0 NA intron (ENSMUSG00000027248.13, intron 2 of 3) protein_coding-intron (ENSMUSG00000027248.13, intron 4 of 12) 13272 ENSMUSG00000027248.13 ENSMUSG00000027248 ENSMUST00000130450 Pdia3 protein_coding Interval_84551 chr19 12719069 12719482 + 0 NA TTS (ENSMUSG00000024694.9) protein_coding-TTS (ENSMUSG00000024694.9) 1928 ENSMUSG00000084981.7 ENSMUSG00000084981 ENSMUST00000124184 Gm15962 antisense Interval_57359 chr15 9737384 9738320 + 0 NA intron (ENSMUSG00000072663.12, intron 2 of 32) protein_coding-intron (ENSMUSG00000072663.12, intron 2 of 17) 10986 ENSMUSG00000072663.12 ENSMUSG00000072663 ENSMUST00000159368 Spef2 protein_coding Interval_26759 chr11 60280631 60281074 + 0 NA intron (ENSMUSG00000000538.18, intron 1 of 8) protein_coding-intron (ENSMUSG00000000538.18, intron 1 of 12) 21972 ENSMUSG00000098349.1 ENSMUSG00000098349 ENSMUST00000183802 Gm27711 miRNA Interval_100482 chr2 169412096 169413416 + 0 NA Intergenic Intergenic -7306 ENSMUSG00000085350.1 ENSMUSG00000085350 ENSMUST00000131509 4930529I22Rik lincRNA Interval_93143 chr2 70566830 70569097 + 0 NA TTS (ENSMUSG00000070880.10) protein_coding-TTS (ENSMUSG00000070880.10) 5800 ENSMUSG00000070880.10 ENSMUSG00000070880 ENSMUST00000140478 Gad1 protein_coding Interval_121739 chr5 6215878 6216219 + 0 NA Intergenic Intergenic 97943 ENSMUSG00000105370.1 ENSMUSG00000105370 ENSMUST00000197319 Gm42718 processed_pseudogene Interval_78507 chr18 13838294 13838620 + 0 NA intron (ENSMUSG00000024420.9, intron 1 of 1) protein_coding-intron (ENSMUSG00000024420.9, intron 4 of 7) 37869 ENSMUSG00000024420.9 ENSMUSG00000024420 ENSMUST00000234025 Zfp521 protein_coding Interval_74317 chr17 48825371 48825839 + 0 NA Intergenic Intergenic -86859 ENSMUSG00000110276.1 ENSMUSG00000110276 ENSMUST00000209681 Gm45330 lincRNA Interval_130258 chr5 125259011 125259280 + 0 NA intron (ENSMUSG00000105039.1, intron 1 of 3) lincRNA-intron (ENSMUSG00000105039.1, intron 1 of 3) 13670 ENSMUSG00000105039.1 ENSMUSG00000105039 ENSMUST00000198586 Gm32585 lincRNA Interval_161188 chr8 118354790 118355401 + 0 NA intron (ENSMUSG00000031841.19, intron 2 of 8) protein_coding-intron (ENSMUSG00000031841.19, intron 1 of 13) 27096 ENSMUSG00000110662.1 ENSMUSG00000110662 ENSMUST00000213075 Gm45722 processed_pseudogene Interval_109599 chr3 144981459 144981936 + 0 NA exon (ENSMUSG00000106361.1, exon 3 of 3) macro_lncRNA-exon (ENSMUSG00000106361.1, exon 3 of 3) -6652 ENSMUSG00000068547.7 ENSMUSG00000068547 ENSMUST00000238960 Clca4a protein_coding Interval_130905 chr5 133826650 133828249 + 0 NA Intergenic Intergenic 15070 ENSMUSG00000106067.1 ENSMUSG00000106067 ENSMUST00000198842 Gm7902 processed_pseudogene Interval_51519 chr14 29628326 29628591 + 0 NA intron (ENSMUSG00000021991.9, intron 2 of 37) protein_coding-intron (ENSMUSG00000021991.9, intron 2 of 37) 53761 ENSMUSG00000114704.1 ENSMUSG00000114704 ENSMUST00000224352 Gm48003 antisense Interval_118750 chr4 133518656 133519716 + 0 NA intron (ENSMUSG00000037600.16, intron 1 of 3) protein_coding-intron (ENSMUSG00000037600.16, intron 1 of 3) 163 ENSMUSG00000037600.16 ENSMUSG00000037600 ENSMUST00000121797 Kdf1 protein_coding Interval_148573 chr7 82772722 82773778 + 0 NA intron (ENSMUSG00000038563.14, intron 19 of 19) protein_coding-intron (ENSMUSG00000038563.14, intron 19 of 19) -17606 ENSMUSG00000086690.1 ENSMUSG00000086690 ENSMUST00000144828 4933406J10Rik antisense Interval_140146 chr6 114840256 114841628 + 0 NA intron (ENSMUSG00000030314.16, intron 20 of 20) protein_coding-intron (ENSMUSG00000030314.16, intron 18 of 18) 51552 ENSMUSG00000107395.1 ENSMUSG00000107395 ENSMUST00000203217 Gm44331 processed_pseudogene Interval_83979 chr19 5918249 5918565 + 0 NA exon (ENSMUSG00000045664.5, exon 2 of 2) protein_coding-exon (ENSMUSG00000045664.5, exon 2 of 2) 5420 ENSMUSG00000110156.2 ENSMUSG00000110156 ENSMUST00000235359 Gm42067 antisense Interval_140224 chr6 115663684 115664070 + 0 NA intron (ENSMUSG00000000441.17, intron 1 of 6) protein_coding-intron (ENSMUSG00000000441.17, intron 1 of 16) -12091 ENSMUSG00000107994.1 ENSMUSG00000107994 ENSMUST00000203121 D830050J10Rik bidirectional_promoter_lncRNA Interval_44318 chr13 43584775 43586255 + 0 NA Intergenic Intergenic -25324 ENSMUSG00000021371.5 ENSMUSG00000021371 ENSMUST00000223353 Mcur1 protein_coding Interval_36691 chr12 52090703 52092511 + 0 NA Intergenic Intergenic 12593 ENSMUSG00000112063.1 ENSMUSG00000112063 ENSMUST00000218420 Gm32220 processed_pseudogene Interval_25036 chr11 43424533 43427110 + 0 NA exon (ENSMUSG00000020415.16, exon 1 of 4) protein_coding-exon (ENSMUSG00000020415.16, exon 1 of 4) 160 ENSMUSG00000020415.16 ENSMUSG00000020415 ENSMUST00000148130 Pttg1 protein_coding Interval_132578 chr5 146422849 146423187 + 0 NA intron (ENSMUSG00000029636.11, intron 2 of 9) protein_coding-intron (ENSMUSG00000029636.11, intron 2 of 9) -32591 ENSMUSG00000029636.11 ENSMUSG00000029636 ENSMUST00000238592 Wasf3 protein_coding Interval_89515 chr2 21460467 21461254 + 0 NA intron (ENSMUSG00000045967.11, intron 2 of 7) protein_coding-intron (ENSMUSG00000045967.11, intron 2 of 10) -17331 ENSMUSG00000080846.1 ENSMUSG00000080846 ENSMUST00000118053 Gm13379 processed_pseudogene Interval_172808 chrX 50537086 50537950 + 0 NA Intergenic Intergenic 5266 ENSMUSG00000083112.1 ENSMUSG00000083112 ENSMUST00000120656 Gm14620 processed_pseudogene Interval_85013 chr19 21472132 21473083 + 0 NA promoter-TSS (ENSMUSG00000058624.13) protein_coding-promoter-TSS (ENSMUSG00000058624.13) -31748 ENSMUSG00000058624.13 ENSMUSG00000058624 ENSMUST00000136258 Gda protein_coding Interval_87428 chr19 50184808 50185547 + 0 NA intron (ENSMUSG00000043531.16, intron 19 of 25) protein_coding-intron (ENSMUSG00000043531.16, intron 20 of 26) 38239 ENSMUSG00000110007.2 ENSMUSG00000110007 ENSMUST00000210140 Gm45352 antisense Interval_110646 chr4 5690330 5690555 + 0 NA intron (ENSMUSG00000049119.14, intron 2 of 3) protein_coding-intron (ENSMUSG00000049119.14, intron 1 of 2) -2640 ENSMUSG00000077392.1 ENSMUSG00000077392 ENSMUST00000104204 Gm24337 snoRNA Interval_26765 chr11 60333376 60333594 + 0 NA intron (ENSMUSG00000000538.18, intron 1 of 8) protein_coding-intron (ENSMUSG00000000538.18, intron 1 of 12) -9760 ENSMUSG00000082148.1 ENSMUSG00000082148 ENSMUST00000120311 Gm12266 processed_pseudogene Interval_148183 chr7 79687933 79688258 + 0 NA intron (ENSMUSG00000046591.10, intron 15 of 19) protein_coding-intron (ENSMUSG00000046591.10, intron 15 of 21) 17174 ENSMUSG00000046591.10 ENSMUSG00000046591 ENSMUST00000206677 Ticrr protein_coding Interval_101389 chr2 180983890 180984726 + 0 NA promoter-TSS (ENSMUSG00000070461.3) sense_overlapping-promoter-TSS (ENSMUSG00000070461.3) 384 ENSMUSG00000070461.3 ENSMUSG00000070461 ENSMUST00000094214 9230112E08Rik sense_overlapping Interval_43835 chr13 37477494 37478689 + 0 NA intron (ENSMUSG00000114701.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000114701.1, intron 1 of 1) -4294 ENSMUSG00000114573.1 ENSMUSG00000114573 ENSMUST00000223569 Gm47732 lincRNA Interval_109981 chr3 152290568 152291245 + 0 NA TTS (ENSMUSG00000054942.13) protein_coding-TTS (ENSMUSG00000054942.13) -25138 ENSMUSG00000039103.12 ENSMUSG00000039103 ENSMUST00000199752 Nexn protein_coding Interval_57727 chr15 16975843 16976992 + 0 NA Intergenic Intergenic 100522 ENSMUSG00000115182.1 ENSMUSG00000115182 ENSMUST00000227358 Gm49128 lincRNA Interval_173735 chrX 103283428 103284375 + 0 NA intron (ENSMUSG00000031325.15, intron 1 of 3) transcribed_unitary_pseudogene-intron (ENSMUSG00000031325.15, intron 1 of 3) 4177 ENSMUSG00000031325.15 ENSMUSG00000031325 ENSMUST00000183315 4930519F16Rik transcribed_unitary_pseudogene Interval_37275 chr12 64396072 64396798 + 0 NA Intergenic Intergenic 78255 ENSMUSG00000043060.8 ENSMUSG00000043060 ENSMUST00000059833 Fscb protein_coding Interval_54295 chr14 67233148 67235676 + 0 NA promoter-TSS (ENSMUSG00000022053.13) protein_coding-promoter-TSS (ENSMUSG00000022053.13) 809 ENSMUSG00000022053.13 ENSMUSG00000022053 ENSMUST00000176029 Ebf2 protein_coding Interval_123575 chr5 33578252 33578833 + 0 NA Intergenic Intergenic 50520 ENSMUSG00000037339.17 ENSMUSG00000037339 ENSMUST00000140043 Fam53a protein_coding Interval_41787 chr12 119154989 119155212 + 0 NA Intergenic Intergenic 83701 ENSMUSG00000025321.14 ENSMUSG00000025321 ENSMUST00000137804 Itgb8 protein_coding Interval_174041 chrX 131412012 131412221 + 0 NA Intergenic Intergenic 147400 ENSMUSG00000081072.1 ENSMUSG00000081072 ENSMUST00000121626 Gm14977 processed_pseudogene Interval_9963 chr1 164416878 164417145 + 0 NA intron (ENSMUSG00000026575.15, intron 14 of 15) protein_coding-intron (ENSMUSG00000026575.15, intron 12 of 12) -7702 ENSMUSG00000103493.1 ENSMUSG00000103493 ENSMUST00000194180 Gm37411 TEC Interval_95889 chr2 118088873 118089280 + 0 NA intron (ENSMUSG00000087203.7, intron 2 of 9) processed_transcript-intron (ENSMUSG00000087203.7, intron 2 of 2) -11114 ENSMUSG00000077359.1 ENSMUSG00000077359 ENSMUST00000104171 Gm25308 snRNA Interval_51210 chr14 25030864 25031362 + 0 NA promoter-TSS (ENSMUSG00000114416.1) TEC-promoter-TSS (ENSMUSG00000114416.1) 16 ENSMUSG00000114416.1 ENSMUSG00000114416 ENSMUST00000224831 Gm47907 TEC Interval_24139 chr11 30675836 30677200 + 0 NA Intergenic Intergenic -26931 ENSMUSG00000060923.5 ENSMUSG00000060923 ENSMUST00000074613 Acyp2 protein_coding Interval_8154 chr1 136120944 136121302 + 0 NA Intergenic Intergenic -1301 ENSMUSG00000102717.1 ENSMUSG00000102717 ENSMUST00000194155 Gm37759 antisense Interval_33048 chr11 113868439 113868887 + 0 NA intron (ENSMUSG00000041592.16, intron 10 of 11) protein_coding-intron (ENSMUSG00000041592.16, intron 10 of 44) -58240 ENSMUSG00000041592.16 ENSMUSG00000041592 ENSMUST00000144301 Sdk2 protein_coding Interval_73773 chr17 43496620 43497093 + 0 NA intron (ENSMUSG00000023914.16, intron 5 of 13) protein_coding-intron (ENSMUSG00000023914.16, intron 5 of 13) 5877 ENSMUSG00000023914.16 ENSMUSG00000023914 ENSMUST00000152155 Mep1a protein_coding Interval_165699 chr9 51103142 51104395 + 0 NA promoter-TSS (ENSMUSG00000065492.1) miRNA-promoter-TSS (ENSMUSG00000065492.1) -123 ENSMUSG00000065492.1 ENSMUSG00000065492 ENSMUST00000083558 Mir34b miRNA Interval_36887 chr12 54976071 54976612 + 0 NA intron (ENSMUSG00000035021.13, intron 2 of 2) protein_coding-intron (ENSMUSG00000035021.13, intron 2 of 26) 10188 ENSMUSG00000092233.1 ENSMUSG00000092233 ENSMUST00000173803 Gm20403 protein_coding Interval_141396 chr6 127995661 127995847 + 0 NA intron (ENSMUSG00000030352.15, intron 2 of 2) protein_coding-intron (ENSMUSG00000030352.15, intron 3 of 8) 39251 ENSMUSG00000030352.15 ENSMUSG00000030352 ENSMUST00000127075 Tspan9 protein_coding Interval_56934 chr14 123626189 123627454 + 0 NA promoter-TSS (ENSMUSG00000000197.8) protein_coding-promoter-TSS (ENSMUSG00000000197.8) 323 ENSMUSG00000000197.8 ENSMUSG00000000197 ENSMUST00000228766 Nalcn protein_coding Interval_78007 chr18 6636357 6636594 + 0 NA intron (ENSMUSG00000039540.9, intron 7 of 7) protein_coding-intron (ENSMUSG00000039540.9, intron 9 of 9) 32846 ENSMUSG00000039540.9 ENSMUSG00000039540 ENSMUST00000234337 4921524L21Rik protein_coding Interval_49316 chr13 110678723 110679049 + 0 NA Intergenic Intergenic -5026 ENSMUSG00000114775.1 ENSMUSG00000114775 ENSMUST00000225669 Gm33172 lincRNA Interval_74820 chr17 56727372 56730087 + 0 NA Intergenic Intergenic -5499 ENSMUSG00000117146.2 ENSMUSG00000117146 ENSMUST00000233424 Fut4-ps1 transcribed_processed_pseudogene Interval_102260 chr3 20076424 20077088 + 0 NA intron (ENSMUSG00000002428.12, intron 10 of 23) protein_coding-intron (ENSMUSG00000002428.12, intron 10 of 24) -31720 ENSMUSG00000002428.12 ENSMUSG00000002428 ENSMUST00000155635 Hltf protein_coding Interval_34168 chr11 121041110 121041850 + 0 NA intron (ENSMUSG00000086835.2, intron 2 of 2) antisense-intron (ENSMUSG00000086835.2, intron 2 of 2) -2062 ENSMUSG00000025163.6 ENSMUSG00000025163 ENSMUST00000163465 Cd7 protein_coding Interval_87476 chr19 52775320 52775493 + 0 NA Intergenic Intergenic -147836 ENSMUSG00000117896.1 ENSMUSG00000117896 ENSMUST00000237126 AA387883 lincRNA Interval_132373 chr5 144548102 144548858 + 0 NA intron (ENSMUSG00000059991.7, intron 2 of 4) protein_coding-intron (ENSMUSG00000059991.7, intron 2 of 4) 2578 ENSMUSG00000059991.7 ENSMUSG00000059991 ENSMUST00000071782 Nptx2 protein_coding Interval_150659 chr7 113147473 113148104 + 0 NA Intergenic Intergenic -5773 ENSMUSG00000110009.1 ENSMUSG00000110009 ENSMUST00000210408 4930543E12Rik lincRNA Interval_57430 chr15 10722727 10725177 + 0 NA intron (ENSMUSG00000096971.2, intron 2 of 6) processed_transcript-intron (ENSMUSG00000096971.2, intron 2 of 6) 9052 ENSMUSG00000096971.2 ENSMUSG00000096971 ENSMUST00000181739 4930556M19Rik processed_transcript Interval_131403 chr5 136951548 136953788 + 0 NA promoter-TSS (ENSMUSG00000019054.13) protein_coding-promoter-TSS (ENSMUSG00000019054.13) -10177 ENSMUSG00000019054.13 ENSMUSG00000019054 ENSMUST00000152658 Fis1 protein_coding Interval_146845 chr7 53136431 53137520 + 0 NA Intergenic Intergenic 209905 ENSMUSG00000070203.1 ENSMUSG00000070203 ENSMUST00000093693 Gm22444 snRNA Interval_45158 chr13 52842401 52842881 + 0 NA intron (ENSMUSG00000021460.17, intron 5 of 9) protein_coding-intron (ENSMUSG00000021460.17, intron 6 of 9) 70305 ENSMUSG00000021460.17 ENSMUSG00000021460 ENSMUST00000151469 Auh protein_coding Interval_2364 chr1 38503669 38504277 + 0 NA intron (ENSMUSG00000037138.18, intron 5 of 22) protein_coding-intron (ENSMUSG00000037138.18, intron 5 of 7) 16454 ENSMUSG00000102984.1 ENSMUSG00000102984 ENSMUST00000195175 Gm34727 processed_pseudogene Interval_4428 chr1 74094643 74095556 + 0 NA intron (ENSMUSG00000055322.16, intron 1 of 33) protein_coding-intron (ENSMUSG00000055322.16, intron 1 of 34) 3577 ENSMUSG00000055322.16 ENSMUSG00000055322 ENSMUST00000190599 Tns1 protein_coding Interval_69981 chr17 3804645 3805057 + 0 NA Intergenic Intergenic -108590 ENSMUSG00000023802.4 ENSMUSG00000023802 ENSMUST00000115800 Nox3 protein_coding Interval_320 chr1 3913104 3914327 + 0 NA intron (ENSMUSG00000102343.1, intron 2 of 2) lincRNA-intron (ENSMUSG00000102343.1, intron 2 of 2) 72500 ENSMUSG00000102343.1 ENSMUSG00000102343 ENSMUST00000192427 Gm37381 lincRNA Interval_162265 chr8 126532108 126532566 + 0 NA Intergenic Intergenic -34633 ENSMUSG00000097060.1 ENSMUSG00000097060 ENSMUST00000181773 Gm26759 antisense Interval_64538 chr16 13152056 13153266 + 0 NA Intergenic Intergenic 20270 ENSMUSG00000022545.13 ENSMUSG00000022545 ENSMUST00000156393 Ercc4 protein_coding Interval_126202 chr5 82200298 82200855 + 0 NA Intergenic Intergenic -75866 ENSMUSG00000099863.1 ENSMUSG00000099863 ENSMUST00000186079 1700031L13Rik protein_coding Interval_88074 chr19 58846320 58846818 + 0 NA promoter-TSS (ENSMUSG00000025092.7) protein_coding-promoter-TSS (ENSMUSG00000025092.7) -24448 ENSMUSG00000025092.7 ENSMUSG00000025092 ENSMUST00000237786 Hspa12a protein_coding Interval_75293 chr17 65737387 65738218 + 0 NA intron (ENSMUSG00000056515.9, intron 1 of 2) protein_coding-intron (ENSMUSG00000056515.9, intron 1 of 6) 34838 ENSMUSG00000056515.9 ENSMUSG00000056515 ENSMUST00000233258 Rab31 protein_coding Interval_136972 chr6 65154610 65154823 + 0 NA Intergenic Intergenic 3719 ENSMUSG00000107968.1 ENSMUSG00000107968 ENSMUST00000203338 Gm44419 processed_pseudogene Interval_160247 chr8 107443123 107443840 + 0 NA TTS (ENSMUSG00000110501.1) processed_pseudogene-TTS (ENSMUSG00000110501.1) 1211 ENSMUSG00000110501.1 ENSMUSG00000110501 ENSMUST00000211879 Gm45900 processed_pseudogene Interval_160276 chr8 107638236 107638718 + 0 NA Intergenic Intergenic -50019 ENSMUSG00000039067.5 ENSMUSG00000039067 ENSMUST00000213080 Psmd7 protein_coding Interval_81323 chr18 57978245 57978592 + 0 NA Intergenic Intergenic 51213 ENSMUSG00000024597.11 ENSMUSG00000024597 ENSMUST00000236673 Slc12a2 protein_coding Interval_60191 chr15 67174705 67175052 + 0 NA intron (ENSMUSG00000013846.10, intron 1 of 7) protein_coding-intron (ENSMUSG00000013846.10, intron 1 of 8) -45855 ENSMUSG00000013846.10 ENSMUSG00000013846 ENSMUST00000230150 St3gal1 protein_coding Interval_156420 chr8 48017853 48018484 + 0 NA Intergenic Intergenic -9035 ENSMUSG00000110624.1 ENSMUSG00000110624 ENSMUST00000212073 Gm32052 lincRNA Interval_24509 chr11 33850457 33850737 + 0 NA intron (ENSMUSG00000053519.17, intron 1 of 7) protein_coding-intron (ENSMUSG00000053519.17, intron 1 of 3) -112416 ENSMUSG00000020155.2 ENSMUSG00000020155 ENSMUST00000020362 Kcnmb1 protein_coding Interval_43515 chr13 32411538 32412084 + 0 NA Intergenic Intergenic -28123 ENSMUSG00000085770.1 ENSMUSG00000085770 ENSMUST00000138574 Gm11381 lincRNA Interval_71212 chr17 21203227 21204738 + 0 NA Intergenic Intergenic 5030 ENSMUSG00000095963.1 ENSMUSG00000095963 ENSMUST00000167648 Gm7742 processed_pseudogene Interval_17992 chr10 81272044 81272584 + 0 NA promoter-TSS (ENSMUSG00000004931.11) protein_coding-promoter-TSS (ENSMUSG00000004931.11) 717 ENSMUSG00000092781.1 ENSMUSG00000092781 ENSMUST00000175040 Mir3057 miRNA Interval_109888 chr3 149506053 149506305 + 0 NA Intergenic Intergenic -60878 ENSMUSG00000106515.4 ENSMUSG00000106515 ENSMUST00000199503 Gm30382 lincRNA Interval_90342 chr2 29879342 29881430 + 0 NA intron (ENSMUSG00000039787.13, intron 2 of 2) protein_coding-intron (ENSMUSG00000039787.13, intron 9 of 11) 4194 ENSMUSG00000039787.13 ENSMUSG00000039787 ENSMUST00000155355 Cercam protein_coding Interval_6541 chr1 115100268 115100660 + 0 NA Intergenic Intergenic 119299 ENSMUSG00000101687.1 ENSMUSG00000101687 ENSMUST00000185902 Gm4854 processed_pseudogene Interval_125089 chr5 64372421 64372779 + 0 NA Intergenic Intergenic -10854 ENSMUSG00000105443.1 ENSMUSG00000105443 ENSMUST00000200306 Gm43837 lincRNA Interval_71107 chr17 18231821 18232349 + 0 NA Intergenic Intergenic 45671 ENSMUSG00000090417.4 ENSMUSG00000090417 ENSMUST00000231390 Vmn2r94 protein_coding Interval_105512 chr3 87163245 87164206 + 0 NA intron (ENSMUSG00000041734.15, intron 1 of 15) protein_coding-intron (ENSMUSG00000041734.15, intron 1 of 13) 6032 ENSMUSG00000102893.1 ENSMUSG00000102893 ENSMUST00000192571 Gm37855 lincRNA Interval_117552 chr4 124639204 124640111 + 0 NA intron (ENSMUSG00000098760.1, intron 1 of 1) antisense-intron (ENSMUSG00000098760.1, intron 1 of 1) -17150 ENSMUSG00000090125.3 ENSMUSG00000090125 ENSMUST00000053491 Pou3f1 protein_coding Interval_103995 chr3 56631722 56632838 + 0 NA Intergenic Intergenic -186868 ENSMUSG00000077710.1 ENSMUSG00000077710 ENSMUST00000104522 Gm25727 snoRNA Interval_154408 chr8 15827951 15828331 + 0 NA Intergenic Intergenic -49523 ENSMUSG00000109757.1 ENSMUSG00000109757 ENSMUST00000211639 Gm7128 processed_pseudogene Interval_7508 chr1 131909798 131911625 + 0 NA exon (ENSMUSG00000026434.12, exon 1 of 7) protein_coding-exon (ENSMUSG00000026434.12, exon 1 of 7) 177 ENSMUSG00000026434.12 ENSMUSG00000026434 ENSMUST00000187405 Nucks1 protein_coding Interval_12028 chr1 188968366 188968803 + 0 NA Intergenic Intergenic 39257 ENSMUSG00000026608.13 ENSMUSG00000026608 ENSMUST00000193273 Kctd3 protein_coding Interval_100573 chr2 170192644 170196412 + 0 NA Intergenic Intergenic -46425 ENSMUSG00000052056.14 ENSMUSG00000052056 ENSMUST00000149318 Zfp217 protein_coding Interval_28155 chr11 73291194 73291680 + 0 NA intron (ENSMUSG00000043029.2, intron 12 of 17) protein_coding-intron (ENSMUSG00000043029.2, intron 12 of 17) 24049 ENSMUSG00000043029.2 ENSMUSG00000043029 ENSMUST00000049676 Trpv3 protein_coding Interval_18912 chr10 93063616 93064137 + 0 NA intron (ENSMUSG00000020014.17, intron 4 of 67) protein_coding-intron (ENSMUSG00000020014.17, intron 4 of 17) -21375 ENSMUSG00000111013.1 ENSMUSG00000111013 ENSMUST00000214288 Gm32468 lincRNA Interval_138060 chr6 84916244 84916816 + 0 NA intron (ENSMUSG00000033769.16, intron 5 of 13) protein_coding-intron (ENSMUSG00000033769.16, intron 6 of 16) -4593 ENSMUSG00000108012.1 ENSMUSG00000108012 ENSMUST00000204154 Gm44012 antisense Interval_97173 chr2 131996249 131996446 + 0 NA exon (ENSMUSG00000027339.15, exon 11 of 11) protein_coding-exon (ENSMUSG00000027339.15, exon 11 of 11) 24826 ENSMUSG00000027339.15 ENSMUSG00000027339 ENSMUST00000140791 Rassf2 protein_coding Interval_160610 chr8 111033300 111034507 + 0 NA promoter-TSS (ENSMUSG00000031960.14) protein_coding-promoter-TSS (ENSMUSG00000031960.14) 24 ENSMUSG00000031960.14 ENSMUSG00000031960 ENSMUST00000128320 Aars protein_coding Interval_144283 chr7 24285942 24286771 + 0 NA TTS (ENSMUSG00000118477.1) processed_pseudogene-TTS (ENSMUSG00000118477.1) -1953 ENSMUSG00000118444.1 ENSMUSG00000118444 ENSMUST00000238310 Gm50477 lincRNA Interval_158786 chr8 86524731 86525016 + 0 NA intron (ENSMUSG00000036872.16, intron 21 of 29) protein_coding-intron (ENSMUSG00000036872.16, intron 20 of 28) 41717 ENSMUSG00000036872.16 ENSMUSG00000036872 ENSMUST00000152438 Abcc12 protein_coding Interval_29885 chr11 87504547 87506178 + 0 NA intron (ENSMUSG00000010342.16, intron 10 of 30) protein_coding-intron (ENSMUSG00000010342.16, intron 10 of 30) 33994 ENSMUSG00000105115.1 ENSMUSG00000105115 ENSMUST00000196353 Rnu3b2 snoRNA Interval_25575 chr11 49887308 49887549 + 0 NA Intergenic Intergenic -8303 ENSMUSG00000080487.1 ENSMUSG00000080487 ENSMUST00000116837 Gm23492 miRNA Interval_5536 chr1 89646423 89647271 + 0 NA intron (ENSMUSG00000055013.16, intron 6 of 16) protein_coding-intron (ENSMUSG00000055013.16, intron 6 of 17) 37047 ENSMUSG00000102009.6 ENSMUSG00000102009 ENSMUST00000187011 4933400F21Rik processed_transcript Interval_54821 chr14 75500945 75501150 + 0 NA intron (ENSMUSG00000091722.2, intron 1 of 1) protein_coding-intron (ENSMUSG00000091722.2, intron 1 of 1) 45065 ENSMUSG00000091722.2 ENSMUSG00000091722 ENSMUST00000164848 Siah3 protein_coding Interval_112765 chr4 44710841 44714540 + 0 NA Intergenic Intergenic 9890 ENSMUSG00000103995.1 ENSMUSG00000103995 ENSMUST00000192889 5730488B01Rik TEC Interval_27069 chr11 62664564 62664898 + 0 NA TTS (ENSMUSG00000048497.11) protein_coding-TTS (ENSMUSG00000048497.11) 15896 ENSMUSG00000048497.11 ENSMUSG00000048497 ENSMUST00000129162 Mmgt2 protein_coding Interval_171962 chr9 122970704 122971267 + 0 NA intron (ENSMUSG00000036768.6, intron 2 of 17) protein_coding-intron (ENSMUSG00000036768.6, intron 5 of 34) -20009 ENSMUSG00000032551.7 ENSMUSG00000032551 ENSMUST00000215129 1110059G10Rik protein_coding Interval_119556 chr4 138356940 138357176 + 0 NA intron (ENSMUSG00000028755.3, intron 1 of 3) protein_coding-intron (ENSMUSG00000028755.3, intron 1 of 3) -13409 ENSMUSG00000028755.3 ENSMUSG00000028755 ENSMUST00000030535 Cda protein_coding Interval_144690 chr7 27549629 27550272 + 0 NA intron (ENSMUSG00000003363.15, intron 1 of 13) protein_coding-intron (ENSMUSG00000003363.15, intron 1 of 13) -3317 ENSMUSG00000049643.15 ENSMUSG00000049643 ENSMUST00000186501 2310022A10Rik protein_coding Interval_23668 chr11 24266870 24267647 + 0 NA Intergenic Intergenic -64634 ENSMUSG00000086117.1 ENSMUSG00000086117 ENSMUST00000149592 Gm12065 lincRNA Interval_103270 chr3 37686092 37688096 + 0 NA Intergenic Intergenic -20927 ENSMUSG00000104935.1 ENSMUSG00000104935 ENSMUST00000197710 Gm43414 TEC Interval_21967 chr11 5468875 5469688 + 0 NA Intergenic Intergenic 26165 ENSMUSG00000085232.3 ENSMUSG00000085232 ENSMUST00000145746 Gm11962 processed_pseudogene Interval_540 chr1 7102510 7103027 + 0 NA intron (ENSMUSG00000051285.17, intron 1 of 1) protein_coding-intron (ENSMUSG00000051285.17, intron 1 of 5) 33818 ENSMUSG00000098201.1 ENSMUSG00000098201 ENSMUST00000182051 Gm26983 processed_pseudogene Interval_158150 chr8 79230062 79230810 + 0 NA intron (ENSMUSG00000110388.1, intron 2 of 2) protein_coding-intron (ENSMUSG00000031682.5, intron 1 of 5) 4506 ENSMUSG00000110388.1 ENSMUSG00000110388 ENSMUST00000211572 Gm30329 antisense Interval_124438 chr5 47163294 47164070 + 0 NA Intergenic Intergenic 10031 ENSMUSG00000104660.1 ENSMUSG00000104660 ENSMUST00000196294 Gm43601 TEC Interval_64483 chr16 11935690 11936227 + 0 NA Intergenic Intergenic -26562 ENSMUSG00000065979.12 ENSMUSG00000065979 ENSMUST00000073371 Cpped1 protein_coding Interval_57105 chr15 6483828 6484116 + 0 NA intron (ENSMUSG00000022149.18, intron 6 of 10) protein_coding-intron (ENSMUSG00000022149.18, intron 6 of 10) -16725 ENSMUSG00000088749.1 ENSMUSG00000088749 ENSMUST00000158124 Gm23218 misc_RNA Interval_141278 chr6 126791834 126792708 + 0 NA TTS (ENSMUSG00000118420.1) transcribed_unitary_pseudogene-TTS (ENSMUSG00000118420.1) 18373 ENSMUSG00000118420.1 ENSMUSG00000118420 ENSMUST00000238440 Gm29788 transcribed_unitary_pseudogene Interval_20620 chr10 119619482 119620455 + 0 NA intron (ENSMUSG00000034813.18, intron 1 of 21) protein_coding-intron (ENSMUSG00000034813.18, intron 1 of 22) -2248 ENSMUSG00000112555.1 ENSMUSG00000112555 ENSMUST00000218599 Gm47027 antisense Interval_118672 chr4 133117773 133118270 + 0 NA Intergenic Intergenic -12519 ENSMUSG00000028868.13 ENSMUSG00000028868 ENSMUST00000136637 Wasf2 protein_coding Interval_155194 chr8 27361564 27362522 + 0 NA Intergenic Intergenic -6725 ENSMUSG00000031492.13 ENSMUSG00000031492 ENSMUST00000079463 Chrnb3 protein_coding Interval_60246 chr15 69049977 69051110 + 0 NA intron (ENSMUSG00000022332.8, intron 5 of 6) protein_coding-intron (ENSMUSG00000022332.8, intron 7 of 8) 91012 ENSMUSG00000116092.1 ENSMUSG00000116092 ENSMUST00000230699 Gm49422 sense_intronic Interval_97124 chr2 131449677 131450749 + 0 NA Intergenic Intergenic 4427 ENSMUSG00000083671.1 ENSMUSG00000083671 ENSMUST00000117272 Gm14304 processed_pseudogene Interval_145598 chr7 35804375 35805096 + 0 NA intron (ENSMUSG00000044997.3, intron 1 of 2) antisense-intron (ENSMUSG00000044997.3, intron 1 of 2) 2143 ENSMUSG00000044997.3 ENSMUSG00000044997 ENSMUST00000052454 E130304I02Rik antisense Interval_147134 chr7 63712960 63713176 + 0 NA intron (ENSMUSG00000033510.14, intron 3 of 10) protein_coding-intron (ENSMUSG00000033510.14, intron 6 of 13) -52806 ENSMUSG00000108421.1 ENSMUSG00000108421 ENSMUST00000206886 Gm44718 lincRNA Interval_50477 chr14 13921940 13922127 + 0 NA intron (ENSMUSG00000079357.9, intron 2 of 4) protein_coding-intron (ENSMUSG00000079357.9, intron 2 of 4) -7555 ENSMUSG00000084902.2 ENSMUSG00000084902 ENSMUST00000144914 Gm281 protein_coding Interval_8299 chr1 136996498 136997285 + 0 NA Intergenic Intergenic -6621 ENSMUSG00000088970.1 ENSMUSG00000088970 ENSMUST00000158345 Gm23763 snRNA Interval_148782 chr7 87230980 87231196 + 0 NA Intergenic Intergenic 11797 ENSMUSG00000108816.1 ENSMUSG00000108816 ENSMUST00000208077 Gm6230 processed_pseudogene Interval_99133 chr2 157398134 157398797 + 0 NA Intergenic Intergenic -25651 ENSMUSG00000027646.15 ENSMUSG00000027646 ENSMUST00000109529 Src protein_coding Interval_109144 chr3 136741056 136742069 + 0 NA intron (ENSMUSG00000028161.17, intron 1 of 12) protein_coding-intron (ENSMUSG00000028161.17, intron 1 of 13) 18398 ENSMUSG00000105545.1 ENSMUSG00000105545 ENSMUST00000198822 4930599N24Rik TEC Interval_100773 chr2 172466754 172467077 + 0 NA TTS (ENSMUSG00000027502.11) protein_coding-TTS (ENSMUSG00000027502.11) -5605 ENSMUSG00000027505.2 ENSMUSG00000027505 ENSMUST00000029007 Fam209 protein_coding Interval_80314 chr18 39109940 39111203 + 0 NA TTS (ENSMUSG00000118193.1) protein_coding-TTS (ENSMUSG00000118193.1) -116379 ENSMUSG00000086991.1 ENSMUSG00000086991 ENSMUST00000131421 Gm15334 antisense Interval_44905 chr13 49643434 49643625 + 0 NA intron (ENSMUSG00000021391.10, intron 3 of 5) protein_coding-intron (ENSMUSG00000021391.10, intron 3 of 7) 9238 ENSMUSG00000021391.10 ENSMUSG00000021391 ENSMUST00000221751 Cenpp protein_coding Interval_25293 chr11 46154241 46154865 + 0 NA intron (ENSMUSG00000020411.2, intron 4 of 5) protein_coding-intron (ENSMUSG00000020411.2, intron 4 of 5) -7437 ENSMUSG00000086998.1 ENSMUSG00000086998 ENSMUST00000144915 Gm16033 antisense Interval_25139 chr11 44498179 44498372 + 0 NA Intergenic Intergenic 19068 ENSMUSG00000082750.1 ENSMUSG00000082750 ENSMUST00000119188 Gm12156 processed_pseudogene Interval_123441 chr5 32587914 32588453 + 0 NA intron (ENSMUSG00000085234.1, intron 1 of 3) antisense-intron (ENSMUSG00000085234.1, intron 1 of 3) -22988 ENSMUSG00000014932.15 ENSMUSG00000014932 ENSMUST00000200999 Yes1 protein_coding Interval_55362 chr14 84849928 84850172 + 0 NA Intergenic Intergenic -90967 ENSMUSG00000115743.1 ENSMUSG00000115743 ENSMUST00000227353 Gm7004 processed_pseudogene Interval_54518 chr14 70414185 70415176 + 0 NA intron (ENSMUSG00000033644.5, intron 6 of 6) protein_coding-intron (ENSMUSG00000033644.5, intron 6 of 22) 7600 ENSMUSG00000088717.1 ENSMUSG00000088717 ENSMUST00000158092 Gm22725 snoRNA Interval_50392 chr14 12377764 12378557 + 0 NA promoter-TSS (ENSMUSG00000054423.14) protein_coding-promoter-TSS (ENSMUSG00000054423.14) 3575 ENSMUSG00000114230.1 ENSMUSG00000114230 ENSMUST00000223597 Gm48239 antisense Interval_69328 chr16 92234594 92236427 + 0 NA Intergenic Intergenic -28022 ENSMUSG00000116878.1 ENSMUSG00000116878 ENSMUST00000231551 Gm29880 processed_transcript Interval_40351 chr12 104155710 104156086 + 0 NA Intergenic Intergenic -2028 ENSMUSG00000066361.3 ENSMUSG00000066361 ENSMUST00000085050 Serpina3c protein_coding Interval_132326 chr5 144196734 144196942 + 0 NA intron (ENSMUSG00000066621.12, intron 21 of 23) protein_coding-intron (ENSMUSG00000066621.12, intron 22 of 24) 6552 ENSMUSG00000052271.7 ENSMUSG00000052271 ENSMUST00000060747 Bhlha15 protein_coding Interval_24130 chr11 30624006 30624223 + 0 NA intron (ENSMUSG00000060923.5, intron 3 of 3) protein_coding-intron (ENSMUSG00000060923.5, intron 3 of 3) 25473 ENSMUSG00000060923.5 ENSMUSG00000060923 ENSMUST00000074613 Acyp2 protein_coding Interval_67716 chr16 56227372 56228302 + 0 NA intron (ENSMUSG00000035270.15, intron 7 of 18) protein_coding-intron (ENSMUSG00000035270.15, intron 7 of 19) 23524 ENSMUSG00000035270.15 ENSMUSG00000035270 ENSMUST00000159842 Impg2 protein_coding Interval_50726 chr14 18609608 18610161 + 0 NA intron (ENSMUSG00000058317.12, intron 4 of 4) protein_coding-intron (ENSMUSG00000058317.12, intron 3 of 4) -64752 ENSMUSG00000114529.1 ENSMUSG00000114529 ENSMUST00000224515 Gm4939 processed_pseudogene Interval_172659 chrX 41401523 41402999 + 0 NA promoter-TSS (ENSMUSG00000001986.16) protein_coding-promoter-TSS (ENSMUSG00000001986.16) 696 ENSMUSG00000001986.16 ENSMUSG00000001986 ENSMUST00000126843 Gria3 protein_coding Interval_26625 chr11 59293716 59294078 + 0 NA Intergenic Intergenic -3145 ENSMUSG00000009900.7 ENSMUSG00000009900 ENSMUST00000010044 Wnt3a protein_coding Interval_88095 chr19 59048692 59048892 + 0 NA intron (ENSMUSG00000041362.17, intron 3 of 14) protein_coding-intron (ENSMUSG00000041362.17, intron 3 of 16) -10507 ENSMUSG00000041362.17 ENSMUSG00000041362 ENSMUST00000237215 Shtn1 protein_coding Interval_142314 chr6 140603071 140603935 + 0 NA Intergenic Intergenic 18920 ENSMUSG00000107750.1 ENSMUSG00000107750 ENSMUST00000204392 Gm44013 TEC Interval_24145 chr11 30713204 30714000 + 0 NA Intergenic Intergenic -7701 ENSMUSG00000083655.1 ENSMUSG00000083655 ENSMUST00000118660 Gm12099 processed_pseudogene Interval_169804 chr9 101690034 101690817 + 0 NA Intergenic Intergenic 67280 ENSMUSG00000111696.1 ENSMUSG00000111696 ENSMUST00000215480 Gm47932 processed_pseudogene Interval_32817 chr11 111043136 111043934 + 0 NA Intergenic Intergenic -22629 ENSMUSG00000041695.2 ENSMUSG00000041695 ENSMUST00000042970 Kcnj2 protein_coding Interval_88836 chr2 11542776 11543410 + 0 NA intron (ENSMUSG00000026773.19, intron 1 of 11) protein_coding-intron (ENSMUSG00000026773.19, intron 1 of 14) -8399 ENSMUSG00000102376.1 ENSMUSG00000102376 ENSMUST00000195494 Gm37975 TEC Interval_52235 chr14 40916835 40918185 + 0 NA intron (ENSMUSG00000037824.6, intron 2 of 3) protein_coding-intron (ENSMUSG00000037824.6, intron 3 of 8) 16806 ENSMUSG00000037824.6 ENSMUSG00000037824 ENSMUST00000224349 Tspan14 protein_coding Interval_48662 chr13 100939585 100941152 + 0 NA intron (ENSMUSG00000100596.1, intron 2 of 2) lincRNA-intron (ENSMUSG00000100596.1, intron 2 of 2) 6447 ENSMUSG00000114759.1 ENSMUSG00000114759 ENSMUST00000223572 Gm10257 processed_pseudogene Interval_160554 chr8 110629035 110630232 + 0 NA intron (ENSMUSG00000010936.11, intron 1 of 18) protein_coding-intron (ENSMUSG00000010936.11, intron 1 of 18) -15947 ENSMUSG00000010936.11 ENSMUSG00000010936 ENSMUST00000213015 Vac14 protein_coding Interval_85762 chr19 30548635 30550030 + 0 NA exon (ENSMUSG00000024868.8, exon 1 of 4) protein_coding-exon (ENSMUSG00000024868.8, exon 1 of 4) 333 ENSMUSG00000024868.8 ENSMUSG00000024868 ENSMUST00000025803 Dkk1 protein_coding Interval_137956 chr6 83721075 83721992 + 0 NA TTS (ENSMUSG00000087995.1) snRNA-TTS (ENSMUSG00000087995.1) 237 ENSMUSG00000087995.1 ENSMUSG00000087995 ENSMUST00000157370 Gm25054 snRNA Interval_145110 chr7 30089793 30091465 + 0 NA promoter-TSS (ENSMUSG00000078768.2) protein_coding-promoter-TSS (ENSMUSG00000078768.2) -166 ENSMUSG00000078768.2 ENSMUSG00000078768 ENSMUST00000182248 Zfp566 protein_coding Interval_144430 chr7 25105403 25106352 + 0 NA intron (ENSMUSG00000008496.19, intron 4 of 12) protein_coding-intron (ENSMUSG00000008496.19, intron 5 of 13) -8702 ENSMUSG00000098441.1 ENSMUSG00000098441 ENSMUST00000184150 Mir6537 miRNA Interval_23713 chr11 25081688 25082192 + 0 NA Intergenic Intergenic -150686 ENSMUSG00000033015.16 ENSMUSG00000033015 ENSMUST00000044347 4933427E13Rik lincRNA Interval_109491 chr3 142898688 142900040 + 0 NA TTS (ENSMUSG00000105671.1) transcribed_processed_pseudogene-TTS (ENSMUSG00000105671.1) 1289 ENSMUSG00000105671.1 ENSMUSG00000105671 ENSMUST00000197517 Gm31306 transcribed_processed_pseudogene Interval_97132 chr2 131523583 131523808 + 0 NA intron (ENSMUSG00000027333.18, intron 6 of 6) protein_coding-intron (ENSMUSG00000027333.18, intron 6 of 6) 31752 ENSMUSG00000027333.18 ENSMUSG00000027333 ENSMUST00000151143 Smox protein_coding Interval_6899 chr1 120529193 120530320 + 0 NA Intergenic Intergenic -25000 ENSMUSG00000026390.7 ENSMUSG00000026390 ENSMUST00000186432 Marco protein_coding Interval_37807 chr12 72102639 72103450 + 0 NA intron (ENSMUSG00000021086.5, intron 19 of 20) protein_coding-intron (ENSMUSG00000021086.5, intron 19 of 20) 13339 ENSMUSG00000005078.16 ENSMUSG00000005078 ENSMUST00000145752 Jkamp protein_coding Interval_31558 chr11 101354614 101354821 + 0 NA Intergenic Intergenic -1172 ENSMUSG00000082478.1 ENSMUSG00000082478 ENSMUST00000117474 Gm11619 processed_pseudogene Interval_45864 chr13 58615288 58616408 + 0 NA Intergenic Intergenic -4971 ENSMUSG00000021553.14 ENSMUSG00000021553 ENSMUST00000151675 Slc28a3 protein_coding Interval_23566 chr11 23401110 23401751 + 0 NA intron (ENSMUSG00000056342.16, intron 29 of 79) protein_coding-intron (ENSMUSG00000056342.16, intron 29 of 79) 78237 ENSMUSG00000065591.1 ENSMUSG00000065591 ENSMUST00000083657 Gm22753 snRNA Interval_89228 chr2 18199704 18199929 + 0 NA intron (ENSMUSG00000026743.16, intron 16 of 22) protein_coding-intron (ENSMUSG00000026743.16, intron 16 of 22) 17086 ENSMUSG00000026740.12 ENSMUSG00000026740 ENSMUST00000165793 Dnajc1 protein_coding Interval_85383 chr19 25374888 25375956 + 0 NA intron (ENSMUSG00000032702.16, intron 3 of 13) protein_coding-intron (ENSMUSG00000032702.16, intron 3 of 13) -28219 ENSMUSG00000118238.1 ENSMUSG00000118238 ENSMUST00000235913 Gm34432 processed_pseudogene Interval_1072 chr1 14994367 14994582 + 0 NA Intergenic Intergenic 24685 ENSMUSG00000088159.1 ENSMUSG00000088159 ENSMUST00000157534 Gm26345 snoRNA Interval_147277 chr7 65423552 65424010 + 0 NA intron (ENSMUSG00000030516.14, intron 2 of 4) protein_coding-intron (ENSMUSG00000030516.14, intron 2 of 4) 21934 ENSMUSG00000108541.1 ENSMUSG00000108541 ENSMUST00000205496 Gm44795 processed_pseudogene Interval_114325 chr4 72893951 72894218 + 0 NA exon (ENSMUSG00000084173.1, exon 1 of 1) processed_pseudogene-exon (ENSMUSG00000084173.1, exon 1 of 1) 303 ENSMUSG00000084173.1 ENSMUSG00000084173 ENSMUST00000120666 Gm5287 processed_pseudogene Interval_87639 chr19 53915358 53915579 + 0 NA intron (ENSMUSG00000024975.13, intron 5 of 9) protein_coding-intron (ENSMUSG00000024975.13, intron 5 of 11) 21638 ENSMUSG00000024975.13 ENSMUSG00000024975 ENSMUST00000165617 Pdcd4 protein_coding Interval_44848 chr13 49062733 49063327 + 0 NA intron (ENSMUSG00000037989.15, intron 19 of 27) protein_coding-intron (ENSMUSG00000037989.15, intron 19 of 27) 84982 ENSMUSG00000037989.15 ENSMUSG00000037989 ENSMUST00000159633 Wnk2 protein_coding Interval_73011 chr17 34127045 34128505 + 0 NA TTS (ENSMUSG00000118026.1) antisense-TTS (ENSMUSG00000118026.1) 1635 ENSMUSG00000118026.1 ENSMUSG00000118026 ENSMUST00000236447 Gm50335 antisense Interval_64296 chr16 10313376 10314224 + 0 NA promoter-TSS (ENSMUSG00000022505.9) protein_coding-promoter-TSS (ENSMUSG00000022505.9) 71 ENSMUSG00000022505.9 ENSMUSG00000022505 ENSMUST00000230141 Emp2 protein_coding Interval_170246 chr9 106432231 106433343 + 0 NA TTS (ENSMUSG00000023262.13) protein_coding-TTS (ENSMUSG00000023262.13) 2376 ENSMUSG00000023262.13 ENSMUSG00000023262 ENSMUST00000190900 Acy1 protein_coding Interval_119967 chr4 141147333 141148705 + 0 NA promoter-TSS (ENSMUSG00000028920.9) protein_coding-promoter-TSS (ENSMUSG00000028920.9) 97 ENSMUSG00000028920.9 ENSMUSG00000028920 ENSMUST00000146768 Fbxo42 protein_coding Interval_29421 chr11 83891216 83892797 + 0 NA intron (ENSMUSG00000020679.11, intron 6 of 8) protein_coding-intron (ENSMUSG00000020679.11, intron 6 of 8) 39764 ENSMUSG00000020679.11 ENSMUSG00000020679 ENSMUST00000108113 Hnf1b protein_coding Interval_148554 chr7 82533332 82533830 + 0 NA intron (ENSMUSG00000070469.12, intron 15 of 29) protein_coding-intron (ENSMUSG00000070469.12, intron 15 of 29) 114915 ENSMUSG00000038570.15 ENSMUSG00000038570 ENSMUST00000126478 Saxo2 protein_coding Interval_126855 chr5 95711703 95712480 + 0 NA Intergenic Intergenic 24082 ENSMUSG00000096139.4 ENSMUSG00000096139 ENSMUST00000178552 Gm7978 protein_coding Interval_47976 chr13 94810174 94810412 + 0 NA intron (ENSMUSG00000042043.6, intron 1 of 3) protein_coding-intron (ENSMUSG00000042043.6, intron 1 of 3) -7441 ENSMUSG00000042043.6 ENSMUSG00000042043 ENSMUST00000220561 Tbca protein_coding Interval_56282 chr14 116241773 116242028 + 0 NA intron (ENSMUSG00000022112.14, intron 7 of 7) protein_coding-intron (ENSMUSG00000022112.14, intron 7 of 7) -370622 ENSMUSG00000093497.1 ENSMUSG00000093497 ENSMUST00000176344 Gm20713 processed_transcript Interval_71328 chr17 22314354 22315630 + 0 NA promoter-TSS (ENSMUSG00000117284.1) protein_coding-promoter-TSS (ENSMUSG00000117284.1) -155 ENSMUSG00000117284.1 ENSMUSG00000117284 ENSMUST00000233465 Gm7072 protein_coding Interval_96978 chr2 130227277 130227527 + 0 NA intron (ENSMUSG00000060332.9, intron 6 of 18) protein_coding-intron (ENSMUSG00000060332.9, intron 7 of 19) 30859 ENSMUSG00000060332.9 ENSMUSG00000060332 ENSMUST00000166774 Tmc2 protein_coding Interval_64351 chr16 10722933 10723698 + 0 NA intron (ENSMUSG00000068663.14, intron 21 of 22) protein_coding-intron (ENSMUSG00000068663.14, intron 22 of 23) -39776 ENSMUSG00000087384.1 ENSMUSG00000087384 ENSMUST00000126849 Gm15558 antisense Interval_76633 chr17 83010865 83011111 + 0 NA Intergenic Intergenic 54992 ENSMUSG00000117472.1 ENSMUSG00000117472 ENSMUST00000234284 Gm4601 processed_pseudogene Interval_108720 chr3 130708664 130709982 + 0 NA promoter-TSS (ENSMUSG00000041084.8) protein_coding-promoter-TSS (ENSMUSG00000041084.8) 93 ENSMUSG00000041084.8 ENSMUSG00000041084 ENSMUST00000197828 Ostc protein_coding Interval_41513 chr12 115607945 115608247 + 0 NA Intergenic Intergenic 3537 ENSMUSG00000105582.1 ENSMUSG00000105582 ENSMUST00000198789 Ighv1-68 IG_V_pseudogene Interval_132129 chr5 142870959 142872342 + 0 NA TTS (ENSMUSG00000066640.11) protein_coding-TTS (ENSMUSG00000066640.11) 1234 ENSMUSG00000066640.11 ENSMUSG00000066640 ENSMUST00000156725 Fbxl18 protein_coding Interval_28544 chr11 76636919 76637756 + 0 NA Intergenic Intergenic -13779 ENSMUSG00000017631.19 ENSMUSG00000017631 ENSMUST00000137261 Abr protein_coding Interval_13384 chr10 17622156 17623382 + 0 NA intron (ENSMUSG00000112629.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000112629.1, intron 1 of 2) 35744 ENSMUSG00000112629.1 ENSMUSG00000112629 ENSMUST00000219966 Gm47771 lincRNA Interval_148507 chr7 81942523 81942753 + 0 NA Intergenic Intergenic -8615 ENSMUSG00000025104.13 ENSMUSG00000025104 ENSMUST00000149288 Hdgfl3 protein_coding Interval_80063 chr18 37165218 37166049 + 0 NA intron (ENSMUSG00000097430.2, intron 2 of 3) protein_coding-intron (ENSMUSG00000103255.1, intron 3 of 3) 6931 ENSMUSG00000103456.1 ENSMUSG00000103456 ENSMUST00000192936 Gm38097 antisense Interval_127987 chr5 110104463 110105079 + 0 NA TTS (ENSMUSG00000064247.14) protein_coding-TTS (ENSMUSG00000064247.14) 2405 ENSMUSG00000033434.15 ENSMUSG00000033434 ENSMUST00000149227 Gtpbp6 protein_coding Interval_153308 chr7 143501745 143503049 + 0 NA TTS (ENSMUSG00000010760.5) protein_coding-TTS (ENSMUSG00000010760.5) 753 ENSMUSG00000010760.5 ENSMUSG00000010760 ENSMUST00000207561 Phlda2 protein_coding Interval_101662 chr3 8684917 8685581 + 0 NA Intergenic Intergenic -5772 ENSMUSG00000088094.1 ENSMUSG00000088094 ENSMUST00000157469 Gm23670 snoRNA Interval_94082 chr2 83713171 83714662 + 0 NA Intergenic Intergenic -10541 ENSMUSG00000027087.11 ENSMUSG00000027087 ENSMUST00000131192 Itgav protein_coding Interval_122523 chr5 23583063 23583476 + 0 NA intron (ENSMUSG00000062604.11, intron 2 of 5) protein_coding-intron (ENSMUSG00000062604.11, intron 1 of 14) -41151 ENSMUSG00000062604.11 ENSMUSG00000062604 ENSMUST00000196592 Srpk2 protein_coding Interval_43571 chr13 33673424 33673594 + 0 NA Intergenic Intergenic 12034 ENSMUSG00000047889.9 ENSMUSG00000047889 ENSMUST00000221681 Serpinb6d protein_coding Interval_8862 chr1 151616570 151616786 + 0 NA intron (ENSMUSG00000026483.13, intron 1 of 13) protein_coding-intron (ENSMUSG00000026483.13, intron 1 of 14) 45305 ENSMUSG00000026483.13 ENSMUSG00000026483 ENSMUST00000086267 Fam129a protein_coding Interval_156622 chr8 54921886 54922388 + 0 NA Intergenic Intergenic -32706 ENSMUSG00000031517.8 ENSMUSG00000031517 ENSMUST00000033915 Gpm6a protein_coding Interval_42363 chr13 12376126 12376353 + 0 NA Intergenic Intergenic -1919 ENSMUSG00000094185.2 ENSMUSG00000094185 ENSMUST00000180224 Gm5445 processed_pseudogene Interval_68329 chr16 73237576 73238340 + 0 NA intron (ENSMUSG00000116976.1, intron 5 of 5) processed_transcript-intron (ENSMUSG00000116976.1, intron 1 of 4) 165583 ENSMUSG00000116976.1 ENSMUSG00000116976 ENSMUST00000231486 4930500H12Rik processed_transcript Interval_110324 chr3 156871795 156872795 + 0 NA intron (ENSMUSG00000040037.13, intron 2 of 2) protein_coding-intron (ENSMUSG00000040037.13, intron 2 of 6) 48485 ENSMUSG00000086708.1 ENSMUSG00000086708 ENSMUST00000144350 Gm15577 antisense Interval_116699 chr4 116707746 116709101 + 0 NA promoter-TSS (ENSMUSG00000028689.14) protein_coding-promoter-TSS (ENSMUSG00000028689.14) -135 ENSMUSG00000028690.4 ENSMUSG00000028690 ENSMUST00000143330 Mmachc protein_coding Interval_142974 chr6 147866901 147867230 + 0 NA Intergenic Intergenic -147614 ENSMUSG00000086019.1 ENSMUSG00000086019 ENSMUST00000126447 Gm15762 lincRNA Interval_12401 chr1 193083983 193084262 + 0 NA Intergenic Intergenic 31622 ENSMUSG00000102442.1 ENSMUSG00000102442 ENSMUST00000191830 Gm37103 processed_pseudogene Interval_17175 chr10 74061743 74062018 + 0 NA intron (ENSMUSG00000052613.16, intron 2 of 34) protein_coding-intron (ENSMUSG00000052613.16, intron 3 of 30) 114824 ENSMUSG00000052613.16 ENSMUSG00000052613 ENSMUST00000192370 Pcdh15 protein_coding Interval_25114 chr11 44235307 44236392 + 0 NA Intergenic Intergenic 31360 ENSMUSG00000086738.1 ENSMUSG00000086738 ENSMUST00000145584 Gm12154 lincRNA Interval_59286 chr15 50777117 50777378 + 0 NA intron (ENSMUSG00000038679.16, intron 5 of 7) protein_coding-intron (ENSMUSG00000038679.16, intron 5 of 6) 111867 ENSMUSG00000084458.1 ENSMUSG00000084458 ENSMUST00000122509 Mir1907 miRNA Interval_17877 chr10 80547841 80549087 + 0 NA promoter-TSS (ENSMUSG00000047417.18) protein_coding-promoter-TSS (ENSMUSG00000047417.18) -1662 ENSMUSG00000047417.18 ENSMUSG00000047417 ENSMUST00000183139 Rexo1 protein_coding Interval_142424 chr6 141986765 141987170 + 0 NA intron (ENSMUSG00000079263.8, intron 11 of 15) protein_coding-intron (ENSMUSG00000079263.8, intron 9 of 13) -3472 ENSMUSG00000089616.1 ENSMUSG00000089616 ENSMUST00000158991 Gm23775 misc_RNA Interval_6263 chr1 104985415 104985684 + 0 NA intron (ENSMUSG00000050840.8, intron 11 of 11) protein_coding-intron (ENSMUSG00000050840.8, intron 11 of 11) -73216 ENSMUSG00000089866.1 ENSMUSG00000089866 ENSMUST00000159213 Gm15699 antisense Interval_127735 chr5 107209670 107211479 + 0 NA intron (ENSMUSG00000029287.14, intron 3 of 6) protein_coding-intron (ENSMUSG00000029287.14, intron 3 of 16) -31049 ENSMUSG00000084218.1 ENSMUSG00000084218 ENSMUST00000118220 Gm8145 processed_pseudogene Interval_111076 chr4 11672061 11673211 + 0 NA Intergenic Intergenic -22137 ENSMUSG00000084046.1 ENSMUSG00000084046 ENSMUST00000118393 Gm11833 processed_pseudogene Interval_170712 chr9 110244660 110246350 + 0 NA promoter-TSS (ENSMUSG00000032482.9) protein_coding-promoter-TSS (ENSMUSG00000032482.9) -560 ENSMUSG00000032482.9 ENSMUSG00000032482 ENSMUST00000199736 Cspg5 protein_coding Interval_104183 chr3 59956799 59957081 + 0 NA intron (ENSMUSG00000070465.9, intron 2 of 4) transcribed_unprocessed_pseudogene-intron (ENSMUSG00000070465.9, intron 2 of 4) -2420 ENSMUSG00000070465.9 ENSMUSG00000070465 ENSMUST00000191541 Gm9696 transcribed_unprocessed_pseudogene Interval_150532 chr7 112117532 112118230 + 0 NA exon (ENSMUSG00000030772.6, exon 8 of 8) protein_coding-exon (ENSMUSG00000030772.6, exon 8 of 8) 41176 ENSMUSG00000030772.6 ENSMUSG00000030772 ENSMUST00000033036 Dkk3 protein_coding Interval_17556 chr10 77728440 77729535 + 0 NA intron (ENSMUSG00000069581.12, intron 1 of 11) protein_coding-intron (ENSMUSG00000069581.12, intron 1 of 11) 2501 ENSMUSG00000096421.1 ENSMUSG00000096421 ENSMUST00000179726 Gm10100 protein_coding Interval_99857 chr2 165352937 165353468 + 0 NA TTS (ENSMUSG00000056824.15) protein_coding-TTS (ENSMUSG00000056824.15) 15521 ENSMUSG00000056824.15 ENSMUSG00000056824 ENSMUST00000141140 Zfp663 protein_coding Interval_128379 chr5 112978289 112979140 + 0 NA intron (ENSMUSG00000042249.11, intron 2 of 20) protein_coding-intron (ENSMUSG00000042249.11, intron 2 of 20) 36800 ENSMUSG00000042249.11 ENSMUSG00000042249 ENSMUST00000197776 Grk3 protein_coding Interval_39124 chr12 85273401 85274736 + 0 NA promoter-TSS (ENSMUSG00000045064.5) protein_coding-promoter-TSS (ENSMUSG00000045064.5) -271 ENSMUSG00000045064.5 ENSMUSG00000045064 ENSMUST00000059341 Zc2hc1c protein_coding Interval_93185 chr2 70955433 70955722 + 0 NA Intergenic Intergenic 26607 ENSMUSG00000041975.17 ENSMUSG00000041975 ENSMUST00000124273 Mettl8 protein_coding Interval_126005 chr5 76779238 76779859 + 0 NA intron (ENSMUSG00000036377.19, intron 3 of 11) protein_coding-intron (ENSMUSG00000036377.19, intron 2 of 10) -37035 ENSMUSG00000083874.1 ENSMUSG00000083874 ENSMUST00000121248 Gm7494 processed_pseudogene Interval_122209 chr5 19905257 19905529 + 0 NA intron (ENSMUSG00000040003.18, intron 2 of 20) protein_coding-intron (ENSMUSG00000040003.18, intron 2 of 22) -187222 ENSMUSG00000096882.1 ENSMUSG00000096882 ENSMUST00000083029 Gm23570 snRNA Interval_117620 chr4 125096111 125097716 + 0 NA intron (ENSMUSG00000028863.13, intron 4 of 7) protein_coding-intron (ENSMUSG00000028863.13, intron 4 of 5) 11749 ENSMUSG00000028863.13 ENSMUSG00000028863 ENSMUST00000155212 Meaf6 protein_coding Interval_42764 chr13 19202083 19204452 + 0 NA Intergenic Intergenic -7076 ENSMUSG00000104962.1 ENSMUSG00000104962 ENSMUST00000200495 Trgj1 TR_J_gene Interval_44412 chr13 44704282 44707051 + 0 NA Intergenic Intergenic -25704 ENSMUSG00000038518.15 ENSMUSG00000038518 ENSMUST00000173003 Jarid2 protein_coding Interval_151934 chr7 127645170 127646214 + 0 NA Intergenic Intergenic 12542 ENSMUSG00000108766.1 ENSMUSG00000108766 ENSMUST00000206375 Gm44760 TEC Interval_75655 chr17 70056557 70057108 + 0 NA intron (ENSMUSG00000003279.17, intron 1 of 1) protein_coding-intron (ENSMUSG00000003279.17, intron 1 of 14) -131001 ENSMUSG00000117078.1 ENSMUSG00000117078 ENSMUST00000232868 Gm4561 processed_pseudogene Interval_24980 chr11 42368279 42368580 + 0 NA Intergenic Intergenic -47378 ENSMUSG00000020428.13 ENSMUSG00000020428 ENSMUST00000109286 Gabra6 protein_coding Interval_77640 chr17 93482003 93483141 + 0 NA Intergenic Intergenic -90874 ENSMUSG00000117368.1 ENSMUSG00000117368 ENSMUST00000234726 Gm50001 processed_pseudogene Interval_134401 chr6 28333424 28333950 + 0 NA intron (ENSMUSG00000039841.14, intron 1 of 6) protein_coding-intron (ENSMUSG00000039841.14, intron 1 of 6) 29478 ENSMUSG00000083107.1 ENSMUSG00000083107 ENSMUST00000117943 Gm5303 processed_pseudogene Interval_30728 chr11 96152827 96154181 + 0 NA intron (ENSMUSG00000038756.13, intron 11 of 14) protein_coding-intron (ENSMUSG00000038756.13, intron 10 of 13) 19718 ENSMUSG00000038756.13 ENSMUSG00000038756 ENSMUST00000107680 Ttll6 protein_coding Interval_69547 chr16 94156053 94157014 + 0 NA intron (ENSMUSG00000040820.16, intron 2 of 6) protein_coding-intron (ENSMUSG00000040820.16, intron 5 of 9) 12878 ENSMUSG00000076304.1 ENSMUSG00000076304 ENSMUST00000102349 Gm23062 miRNA Interval_169659 chr9 99860975 99861206 + 0 NA Intergenic Intergenic -2777 ENSMUSG00000110929.1 ENSMUSG00000110929 ENSMUST00000216324 Gm47757 lincRNA Interval_112240 chr4 37757037 37758255 + 0 NA Intergenic Intergenic 132272 ENSMUSG00000083983.1 ENSMUSG00000083983 ENSMUST00000119331 Gm12375 processed_pseudogene Interval_103349 chr3 39976784 39977106 + 0 NA Intergenic Intergenic 153368 ENSMUSG00000106948.1 ENSMUSG00000106948 ENSMUST00000202316 Gm42785 processed_pseudogene Interval_117592 chr4 124885587 124886163 + 0 NA promoter-TSS (ENSMUSG00000028876.7) protein_coding-promoter-TSS (ENSMUSG00000028876.7) 8907 ENSMUSG00000085263.1 ENSMUSG00000085263 ENSMUST00000154947 1700125G02Rik antisense Interval_115143 chr4 91379859 91380088 + 0 NA TTS (ENSMUSG00000008489.18) protein_coding-TTS (ENSMUSG00000008489.18) -6610 ENSMUSG00000098563.1 ENSMUSG00000098563 ENSMUST00000183406 Mir6402 miRNA Interval_74235 chr17 47617716 47618362 + 0 NA intron (ENSMUSG00000023984.17, intron 2 of 2) protein_coding-intron (ENSMUSG00000092558.3, intron 2 of 3) 4300 ENSMUSG00000083672.1 ENSMUSG00000083672 ENSMUST00000120025 Kpna2-ps processed_pseudogene Interval_18306 chr10 84742713 84743804 + 0 NA Intergenic Intergenic -18980 ENSMUSG00000020037.15 ENSMUSG00000020037 ENSMUST00000095388 Rfx4 protein_coding Interval_170350 chr9 107337966 107338709 + 0 NA promoter-TSS (ENSMUSG00000032579.14) protein_coding-promoter-TSS (ENSMUSG00000032579.14) -7537 ENSMUSG00000032579.14 ENSMUSG00000032579 ENSMUST00000128895 Hemk1 protein_coding Interval_92363 chr2 59275055 59275276 + 0 NA intron (ENSMUSG00000026991.20, intron 3 of 3) protein_coding-intron (ENSMUSG00000026991.20, intron 3 of 21) 112306 ENSMUSG00000087455.7 ENSMUSG00000087455 ENSMUST00000155111 5330411J11Rik processed_transcript Interval_142860 chr6 146514051 146514899 + 0 NA Intergenic Intergenic -50868 ENSMUSG00000082120.1 ENSMUSG00000082120 ENSMUST00000117133 Gm15720 processed_pseudogene Interval_65134 chr16 20084384 20085052 + 0 NA Intergenic Intergenic -12867 ENSMUSG00000062901.3 ENSMUSG00000062901 ENSMUST00000231842 Klhl24 protein_coding Interval_43268 chr13 28395874 28396119 + 0 NA exon (ENSMUSG00000113216.1, exon 4 of 4) lincRNA-exon (ENSMUSG00000113216.1, exon 4 of 4) 23867 ENSMUSG00000113216.1 ENSMUSG00000113216 ENSMUST00000221933 Gm40841 lincRNA Interval_124720 chr5 53550254 53550913 + 0 NA intron (ENSMUSG00000039191.12, intron 1 of 6) protein_coding-intron (ENSMUSG00000039191.12, intron 1 of 6) -3261 ENSMUSG00000107111.1 ENSMUSG00000107111 ENSMUST00000202154 Gm40304 antisense Interval_77109 chr17 86626727 86627484 + 0 NA intron (ENSMUSG00000045038.14, intron 13 of 14) protein_coding-intron (ENSMUSG00000045038.14, intron 14 of 15) 58391 ENSMUSG00000117568.1 ENSMUSG00000117568 ENSMUST00000234033 Gm18832 processed_pseudogene Interval_14195 chr10 28635821 28636904 + 0 NA Intergenic Intergenic 49369 ENSMUSG00000019889.10 ENSMUSG00000019889 ENSMUST00000220404 Ptprk protein_coding Interval_69093 chr16 90598883 90599081 + 0 NA intron (ENSMUSG00000116830.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000116830.1, intron 1 of 2) 2209 ENSMUSG00000116830.1 ENSMUSG00000116830 ENSMUST00000231619 Gm49714 lincRNA Interval_16976 chr10 70244628 70246161 + 0 NA intron (ENSMUSG00000037762.6, intron 1 of 5) protein_coding-intron (ENSMUSG00000037762.6, intron 1 of 5) -21585 ENSMUSG00000037762.6 ENSMUSG00000037762 ENSMUST00000155933 Slc16a9 protein_coding Interval_147723 chr7 73007359 73008045 + 0 NA Intergenic Intergenic -17549 ENSMUSG00000098035.1 ENSMUSG00000098035 ENSMUST00000182995 Gm5335 processed_pseudogene Interval_152775 chr7 137455509 137456255 + 0 NA intron (ENSMUSG00000031068.8, intron 5 of 6) protein_coding-intron (ENSMUSG00000031068.8, intron 4 of 10) 18217 ENSMUSG00000031068.8 ENSMUSG00000031068 ENSMUST00000211598 Glrx3 protein_coding Interval_11249 chr1 180465673 180466420 + 0 NA promoter-TSS (ENSMUSG00000053963.7) protein_coding-promoter-TSS (ENSMUSG00000053963.7) -165 ENSMUSG00000053963.7 ENSMUSG00000053963 ENSMUST00000211782 Stum protein_coding Interval_18818 chr10 91113069 91113296 + 0 NA Intergenic Intergenic 5354 ENSMUSG00000077167.1 ENSMUSG00000077167 ENSMUST00000103979 Gm24119 snoRNA Interval_87342 chr19 47836891 47837753 + 0 NA promoter-TSS (ENSMUSG00000044948.17) protein_coding-promoter-TSS (ENSMUSG00000044948.17) -17716 ENSMUSG00000025068.8 ENSMUSG00000025068 ENSMUST00000143694 Gsto1 protein_coding Interval_65497 chr16 22806033 22808378 + 0 NA intron (ENSMUSG00000033501.5, intron 1 of 2) protein_coding-intron (ENSMUSG00000033501.5, intron 1 of 2) 4372 ENSMUSG00000033501.5 ENSMUSG00000033501 ENSMUST00000040592 Crygs protein_coding Interval_63403 chr15 100829810 100831472 + 0 NA exon (ENSMUSG00000115912.1, exon 2 of 3) lincRNA-exon (ENSMUSG00000115912.1, exon 2 of 3) 1750 ENSMUSG00000115912.1 ENSMUSG00000115912 ENSMUST00000230694 Gm35569 lincRNA Interval_44483 chr13 45256692 45256905 + 0 NA intron (ENSMUSG00000113919.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000113772.1, intron 2 of 2) 10913 ENSMUSG00000113919.1 ENSMUSG00000113919 ENSMUST00000222218 Gm34466 lincRNA Interval_84587 chr19 13804943 13806151 + 0 NA intron (ENSMUSG00000109530.1, intron 1 of 1) unprocessed_pseudogene-intron (ENSMUSG00000109530.1, intron 1 of 1) 710 ENSMUSG00000109530.1 ENSMUSG00000109530 ENSMUST00000208721 Olfr1498-ps1 unprocessed_pseudogene Interval_69439 chr16 93460898 93461106 + 0 NA Intergenic Intergenic -2197 ENSMUSG00000099968.7 ENSMUSG00000099968 ENSMUST00000231859 1700029J03Rik lincRNA Interval_144288 chr7 24306130 24306353 + 0 NA intron (ENSMUSG00000074282.10, intron 1 of 1) protein_coding-intron (ENSMUSG00000074282.10, intron 4 of 4) -6604 ENSMUSG00000050605.17 ENSMUSG00000050605 ENSMUST00000206535 Zfp61 protein_coding Interval_96995 chr2 130350118 130351441 + 0 NA intron (ENSMUSG00000053552.14, intron 6 of 16) protein_coding-intron (ENSMUSG00000053552.14, intron 6 of 16) 34550 ENSMUSG00000083483.3 ENSMUSG00000083483 ENSMUST00000117531 Gm14044 processed_pseudogene Interval_20310 chr10 116793175 116794230 + 0 NA intron (ENSMUSG00000034057.8, intron 19 of 24) protein_coding-intron (ENSMUSG00000034057.8, intron 19 of 24) 64449 ENSMUSG00000112924.1 ENSMUSG00000112924 ENSMUST00000218193 4930579P08Rik lincRNA Interval_100336 chr2 168468939 168469459 + 0 NA Intergenic Intergenic -50625 ENSMUSG00000082239.1 ENSMUSG00000082239 ENSMUST00000119539 Gm14234 processed_pseudogene Interval_163712 chr9 24796416 24796753 + 0 NA intron (ENSMUSG00000111275.1, intron 2 of 2) lincRNA-intron (ENSMUSG00000111275.1, intron 2 of 2) 20117 ENSMUSG00000111275.1 ENSMUSG00000111275 ENSMUST00000213183 Gm29824 lincRNA Interval_55842 chr14 101386780 101387047 + 0 NA Intergenic Intergenic 43369 ENSMUSG00000115538.1 ENSMUSG00000115538 ENSMUST00000227762 Hspd1-ps5 processed_pseudogene Interval_75332 chr17 65912909 65913230 + 0 NA promoter-TSS (ENSMUSG00000117229.1) lincRNA-promoter-TSS (ENSMUSG00000117229.1) -518 ENSMUSG00000117229.1 ENSMUSG00000117229 ENSMUST00000233760 Gm35550 lincRNA Interval_170327 chr9 107112354 107112814 + 0 NA intron (ENSMUSG00000039716.12, intron 3 of 4) protein_coding-intron (ENSMUSG00000039716.12, intron 4 of 52) -2490 ENSMUSG00000091669.1 ENSMUSG00000091669 ENSMUST00000163665 Gm17117 processed_pseudogene Interval_99345 chr2 159755187 159756155 + 0 NA Intergenic Intergenic 22536 ENSMUSG00000083451.1 ENSMUSG00000083451 ENSMUST00000119101 Gm11445 processed_pseudogene Interval_145470 chr7 35011713 35011940 + 0 NA intron (ENSMUSG00000063931.14, intron 5 of 6) protein_coding-intron (ENSMUSG00000063931.14, intron 9 of 14) 40711 ENSMUSG00000108486.1 ENSMUSG00000108486 ENSMUST00000205869 Gm44836 sense_intronic Interval_60606 chr15 75641792 75642738 + 0 NA promoter-TSS (ENSMUSG00000099034.7) transcribed_unitary_pseudogene-promoter-TSS (ENSMUSG00000099034.7) -1221 ENSMUSG00000099034.7 ENSMUSG00000099034 ENSMUST00000184665 2810039B14Rik transcribed_unitary_pseudogene Interval_66387 chr16 33516722 33518529 + 0 NA promoter-TSS (ENSMUSG00000035506.16) protein_coding-promoter-TSS (ENSMUSG00000035506.16) -98765 ENSMUSG00000035506.16 ENSMUSG00000035506 ENSMUST00000149291 Slc12a8 protein_coding Interval_157977 chr8 77511672 77512395 + 0 NA intron (ENSMUSG00000037148.8, intron 1 of 21) protein_coding-intron (ENSMUSG00000037148.8, intron 1 of 22) -5023 ENSMUSG00000097882.2 ENSMUSG00000097882 ENSMUST00000181420 0610038B21Rik antisense Interval_146095 chr7 43854856 43855276 + 0 NA Intergenic Intergenic 2347 ENSMUSG00000108781.1 ENSMUSG00000108781 ENSMUST00000206293 Gm44707 lincRNA Interval_51794 chr14 32228228 32228448 + 0 NA intron (ENSMUSG00000021911.16, intron 4 of 14) protein_coding-intron (ENSMUSG00000021911.16, intron 7 of 17) -2508 ENSMUSG00000115833.1 ENSMUSG00000115833 ENSMUST00000228947 Gm49196 processed_pseudogene Interval_137296 chr6 71149459 71149850 + 0 NA Intergenic Intergenic -15145 ENSMUSG00000108206.1 ENSMUSG00000108206 ENSMUST00000204123 Gm44427 lincRNA Interval_108854 chr3 132700488 132700718 + 0 NA intron (ENSMUSG00000028030.12, intron 3 of 25) protein_coding-intron (ENSMUSG00000028030.12, intron 3 of 23) 16435 ENSMUSG00000028030.12 ENSMUSG00000028030 ENSMUST00000196491 Tbck protein_coding Interval_52521 chr14 47306979 47307283 + 0 NA intron (ENSMUSG00000021840.17, intron 1 of 2) protein_coding-intron (ENSMUSG00000021840.17, intron 1 of 3) -1646 ENSMUSG00000115082.1 ENSMUSG00000115082 ENSMUST00000228200 Gm49189 antisense Interval_4088 chr1 67944165 67944365 + 0 NA Intergenic Intergenic -29411 ENSMUSG00000096031.1 ENSMUSG00000096031 ENSMUST00000178954 Gm23189 miRNA Interval_79588 chr18 33888902 33892228 + 0 NA intron (ENSMUSG00000024376.7, intron 2 of 5) protein_coding-intron (ENSMUSG00000024376.7, intron 4 of 23) 95401 ENSMUSG00000092819.1 ENSMUSG00000092819 ENSMUST00000175078 Gm23639 snoRNA Interval_135341 chr6 38481131 38482196 + 0 NA intron (ENSMUSG00000038538.17, intron 7 of 14) protein_coding-intron (ENSMUSG00000038538.17, intron 8 of 16) -25662 ENSMUSG00000098285.1 ENSMUSG00000098285 ENSMUST00000183689 Mir7670 miRNA Interval_6756 chr1 119289927 119290301 + 0 NA Intergenic Intergenic 36719 ENSMUSG00000099860.1 ENSMUSG00000099860 ENSMUST00000189894 Gm29456 lincRNA Interval_94532 chr2 91975451 91976573 + 0 NA promoter-TSS (ENSMUSG00000040479.12) protein_coding-promoter-TSS (ENSMUSG00000040479.12) -10412 ENSMUSG00000040479.12 ENSMUSG00000040479 ENSMUST00000126473 Dgkz protein_coding Interval_153804 chr8 8745489 8746606 + 0 NA intron (ENSMUSG00000109062.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000109371.1, intron 2 of 4) 10077 ENSMUSG00000109062.1 ENSMUSG00000109062 ENSMUST00000209128 Gm44622 lincRNA Interval_111733 chr4 26944257 26945229 + 0 NA Intergenic Intergenic 181766 ENSMUSG00000083447.1 ENSMUSG00000083447 ENSMUST00000120562 Gm11904 processed_pseudogene Interval_163821 chr9 26868368 26870223 + 0 NA Intergenic Intergenic -44951 ENSMUSG00000031966.7 ENSMUSG00000031966 ENSMUST00000209592 Glb1l3 protein_coding Interval_134200 chr6 22747114 22747312 + 0 NA Intergenic Intergenic -12186 ENSMUSG00000107303.1 ENSMUSG00000107303 ENSMUST00000202509 Gm18861 processed_pseudogene Interval_54779 chr14 74985022 74985235 + 0 NA intron (ENSMUSG00000115019.1, intron 2 of 2) lincRNA-intron (ENSMUSG00000115019.1, intron 2 of 2) 10042 ENSMUSG00000115019.1 ENSMUSG00000115019 ENSMUST00000228599 Gm4278 lincRNA Interval_116224 chr4 108843195 108843632 + 0 NA intron (ENSMUSG00000028567.8, intron 1 of 1) protein_coding-intron (ENSMUSG00000028567.8, intron 1 of 6) -4372 ENSMUSG00000073775.4 ENSMUSG00000073775 ENSMUST00000102738 Kti12 protein_coding Interval_140700 chr6 120652862 120653337 + 0 NA Intergenic Intergenic -72923 ENSMUSG00000107580.1 ENSMUSG00000107580 ENSMUST00000204159 Gm44124 TEC Interval_64733 chr16 14584033 14584837 + 0 NA intron (ENSMUSG00000075395.11, intron 4 of 10) protein_coding-intron (ENSMUSG00000075395.11, intron 4 of 10) 4214 ENSMUSG00000075395.11 ENSMUSG00000075395 ENSMUST00000100165 A630010A05Rik protein_coding Interval_105683 chr3 88559374 88559968 + 0 NA exon (ENSMUSG00000008604.11, exon 5 of 11) protein_coding-exon (ENSMUSG00000008604.11, exon 5 of 11) -4236 ENSMUSG00000008604.11 ENSMUSG00000008604 ENSMUST00000195498 Ubqln4 protein_coding Interval_41181 chr12 111663456 111664655 + 0 NA Intergenic Intergenic 7489 ENSMUSG00000001270.9 ENSMUSG00000001270 ENSMUST00000222513 Ckb protein_coding Interval_332 chr1 4142464 4143117 + 0 NA intron (ENSMUSG00000025900.13, intron 21 of 29) protein_coding-intron (ENSMUSG00000025900.13, intron 21 of 29) 117729 ENSMUSG00000102948.1 ENSMUSG00000102948 ENSMUST00000195384 Gm6101 processed_pseudogene Interval_73497 chr17 38046206 38046495 + 0 NA Intergenic Intergenic 13729 ENSMUSG00000081724.4 ENSMUSG00000081724 ENSMUST00000122318 Olfr129 protein_coding Interval_38926 chr12 83864406 83864685 + 0 NA intron (ENSMUSG00000021224.15, intron 2 of 8) protein_coding-intron (ENSMUSG00000021224.15, intron 2 of 12) 11337 ENSMUSG00000113423.1 ENSMUSG00000113423 ENSMUST00000220790 Gm3791 processed_pseudogene Interval_52171 chr14 37912038 37912232 + 0 NA exon (ENSMUSG00000114227.1, exon 1 of 1) processed_pseudogene-exon (ENSMUSG00000114227.1, exon 1 of 1) 563 ENSMUSG00000114227.1 ENSMUSG00000114227 ENSMUST00000223652 Gm5204 processed_pseudogene Interval_32917 chr11 113104804 113105202 + 0 NA intron (ENSMUSG00000087259.7, intron 1 of 3) lincRNA-intron (ENSMUSG00000087259.7, intron 1 of 2) 68074 ENSMUSG00000087259.7 ENSMUSG00000087259 ENSMUST00000150712 2610035D17Rik lincRNA Interval_86953 chr19 45162591 45163283 + 0 NA Intergenic Intergenic -3633 ENSMUSG00000092346.1 ENSMUSG00000092346 ENSMUST00000173437 Tlx1os antisense Interval_18510 chr10 86819672 86820268 + 0 NA intron (ENSMUSG00000112743.1, intron 6 of 13) protein_coding-intron (ENSMUSG00000054027.8, intron 6 of 13) -5133 ENSMUSG00000054027.8 ENSMUSG00000054027 ENSMUST00000218792 Nt5dc3 protein_coding Interval_148998 chr7 91218863 91219108 + 0 NA intron (ENSMUSG00000052572.19, intron 1 of 13) protein_coding-intron (ENSMUSG00000052572.19, intron 1 of 22) -24010 ENSMUSG00000089271.1 ENSMUSG00000089271 ENSMUST00000158646 Gm24552 snRNA Interval_92598 chr2 61176685 61177329 + 0 NA Intergenic Intergenic -47785 ENSMUSG00000083197.1 ENSMUSG00000083197 ENSMUST00000120675 Gm13581 processed_pseudogene Interval_148472 chr7 81539485 81540085 + 0 NA intron (ENSMUSG00000038663.7, intron 11 of 12) protein_coding-intron (ENSMUSG00000038663.7, intron 11 of 12) -7264 ENSMUSG00000104453.1 ENSMUSG00000104453 ENSMUST00000193864 Gm37829 TEC Interval_22397 chr11 9538503 9538753 + 0 NA intron (ENSMUSG00000004668.14, intron 47 of 61) protein_coding-intron (ENSMUSG00000004668.14, intron 47 of 61) 166995 ENSMUSG00000104137.1 ENSMUSG00000104137 ENSMUST00000195362 Gm36954 TEC Interval_70128 chr17 5562301 5563446 + 0 NA intron (ENSMUSG00000034265.8, intron 1 of 8) protein_coding-intron (ENSMUSG00000034265.8, intron 1 of 8) 70316 ENSMUSG00000034265.8 ENSMUSG00000034265 ENSMUST00000089185 Zdhhc14 protein_coding Interval_139034 chr6 94389712 94390851 + 0 NA Intergenic Intergenic -27548 ENSMUSG00000107616.1 ENSMUSG00000107616 ENSMUST00000204046 Gm7825 processed_pseudogene Interval_123596 chr5 33689047 33689687 + 0 NA Intergenic Intergenic -6393 ENSMUSG00000106971.1 ENSMUSG00000106971 ENSMUST00000201254 Gm42965 processed_pseudogene Interval_162217 chr8 126065406 126066405 + 0 NA Intergenic Intergenic -5381 ENSMUSG00000110437.1 ENSMUSG00000110437 ENSMUST00000212698 Gm45876 TEC Interval_56382 chr14 118300903 118301144 + 0 NA TTS (ENSMUSG00000088095.1) snoRNA-TTS (ENSMUSG00000088095.1) 1033 ENSMUSG00000088095.1 ENSMUSG00000088095 ENSMUST00000157470 Gm23669 snoRNA Interval_103224 chr3 37157222 37157416 + 0 NA Intergenic Intergenic -25566 ENSMUSG00000084754.1 ENSMUSG00000084754 ENSMUST00000148448 Gm12532 lincRNA Interval_126970 chr5 98604725 98605235 + 0 NA intron (ENSMUSG00000057816.7, intron 3 of 5) protein_coding-intron (ENSMUSG00000057816.7, intron 3 of 5) -38054 ENSMUSG00000067101.5 ENSMUSG00000067101 ENSMUST00000086912 1700010H22Rik lincRNA Interval_129943 chr5 123204532 123205802 + 0 NA intron (ENSMUSG00000029440.15, intron 2 of 3) protein_coding-intron (ENSMUSG00000029440.15, intron 2 of 3) -13579 ENSMUSG00000104606.1 ENSMUSG00000104606 ENSMUST00000195921 Gm43409 lincRNA Interval_43275 chr13 28589249 28589745 + 0 NA intron (ENSMUSG00000085936.7, intron 6 of 7) processed_transcript-intron (ENSMUSG00000085936.7, intron 5 of 5) -72557 ENSMUSG00000085936.7 ENSMUSG00000085936 ENSMUST00000134624 2610307P16Rik processed_transcript Interval_128445 chr5 113353902 113354393 + 0 NA Intergenic Intergenic -3147 ENSMUSG00000053873.1 ENSMUSG00000053873 ENSMUST00000066573 Aym1 protein_coding Interval_11329 chr1 180979534 180981924 + 0 NA intron (ENSMUSG00000038776.13, intron 4 of 4) protein_coding-intron (ENSMUSG00000038776.13, intron 4 of 4) -4440 ENSMUSG00000103930.1 ENSMUSG00000103930 ENSMUST00000191980 Gm36961 unprocessed_pseudogene Interval_114330 chr4 73442291 73443120 + 0 NA Intergenic Intergenic -19386 ENSMUSG00000082566.1 ENSMUSG00000082566 ENSMUST00000120048 Gm11485 processed_pseudogene Interval_49177 chr13 109209593 109210640 + 0 NA intron (ENSMUSG00000021699.17, intron 1 of 14) protein_coding-intron (ENSMUSG00000021699.17, intron 1 of 14) -114628 ENSMUSG00000076946.2 ENSMUSG00000076946 ENSMUST00000103758 Mir582 miRNA Interval_87151 chr19 46477374 46479886 + 0 NA intron (ENSMUSG00000025231.17, intron 10 of 11) protein_coding-intron (ENSMUSG00000025231.17, intron 10 of 11) -36030 ENSMUSG00000025034.9 ENSMUSG00000025034 ENSMUST00000235934 Trim8 protein_coding Interval_54086 chr14 65110163 65110423 + 0 NA intron (ENSMUSG00000021978.9, intron 1 of 2) protein_coding-intron (ENSMUSG00000021978.9, intron 1 of 2) -12188 ENSMUSG00000021978.9 ENSMUSG00000021978 ENSMUST00000223989 Extl3 protein_coding Interval_43498 chr13 31926552 31927116 + 0 NA intron (ENSMUSG00000038372.14, intron 8 of 10) protein_coding-intron (ENSMUSG00000038372.14, intron 8 of 10) 42609 ENSMUSG00000083149.2 ENSMUSG00000083149 ENSMUST00000118067 Gm11380 processed_pseudogene Interval_122751 chr5 25099491 25101638 + 0 NA promoter-TSS (ENSMUSG00000028944.14) protein_coding-promoter-TSS (ENSMUSG00000028944.14) -419 ENSMUSG00000043833.6 ENSMUSG00000043833 ENSMUST00000128569 2900005J15Rik processed_transcript Interval_165873 chr9 54034774 54035807 + 0 NA intron (ENSMUSG00000074345.4, intron 1 of 1) protein_coding-intron (ENSMUSG00000074345.4, intron 1 of 1) -8022 ENSMUSG00000111379.1 ENSMUSG00000111379 ENSMUST00000217574 Gm48346 lincRNA Interval_82767 chr18 76942767 76944853 + 0 NA promoter-TSS (ENSMUSG00000025421.15) protein_coding-promoter-TSS (ENSMUSG00000025421.15) -574 ENSMUSG00000025421.15 ENSMUSG00000025421 ENSMUST00000148955 Hdhd2 protein_coding Interval_67634 chr16 54739841 54740120 + 0 NA Intergenic Intergenic 87914 ENSMUSG00000116727.1 ENSMUSG00000116727 ENSMUST00000231721 Gm8881 processed_pseudogene Interval_123443 chr5 32600555 32600844 + 0 NA intron (ENSMUSG00000085234.1, intron 1 of 3) antisense-intron (ENSMUSG00000085234.1, intron 1 of 3) -10472 ENSMUSG00000014932.15 ENSMUSG00000014932 ENSMUST00000200999 Yes1 protein_coding Interval_44061 chr13 40648747 40650214 + 0 NA Intergenic Intergenic -4831 ENSMUSG00000114322.1 ENSMUSG00000114322 ENSMUST00000225346 Gm47041 TEC Interval_112890 chr4 45844101 45845029 + 0 NA Intergenic Intergenic -28202 ENSMUSG00000035551.6 ENSMUSG00000035551 ENSMUST00000145102 Igfbpl1 protein_coding Interval_160758 chr8 111976215 111976918 + 0 NA intron (ENSMUSG00000031949.17, intron 8 of 8) protein_coding-intron (ENSMUSG00000031949.17, intron 8 of 9) 15736 ENSMUSG00000031949.17 ENSMUSG00000031949 ENSMUST00000120457 Adat1 protein_coding Interval_66363 chr16 33416644 33416971 + 0 NA intron (ENSMUSG00000022811.17, intron 1 of 8) protein_coding-intron (ENSMUSG00000022811.17, intron 1 of 8) 35944 ENSMUSG00000022811.17 ENSMUSG00000022811 ENSMUST00000089677 Zfp148 protein_coding Interval_147950 chr7 75819944 75820357 + 0 NA Intergenic Intergenic -28247 ENSMUSG00000055652.14 ENSMUSG00000055652 ENSMUST00000205887 Klhl25 protein_coding Interval_32795 chr11 110749313 110750465 + 0 NA Intergenic Intergenic 205382 ENSMUSG00000085985.1 ENSMUSG00000085985 ENSMUST00000144689 Gm11682 lincRNA Interval_98628 chr2 153648948 153650606 + 0 NA intron (ENSMUSG00000027478.15, intron 1 of 21) protein_coding-intron (ENSMUSG00000027478.15, intron 1 of 23) 509 ENSMUSG00000079000.3 ENSMUSG00000079000 ENSMUST00000124988 Dnmt3bos antisense Interval_125333 chr5 66241503 66242519 + 0 NA Intergenic Intergenic -17886 ENSMUSG00000029206.13 ENSMUSG00000029206 ENSMUST00000031109 Nsun7 protein_coding Interval_23614 chr11 23810524 23812012 + 0 NA Intergenic Intergenic -34221 ENSMUSG00000087741.1 ENSMUSG00000087741 ENSMUST00000157116 Gm23827 snRNA Interval_153703 chr8 4777850 4779895 + 0 NA TTS (ENSMUSG00000109462.1) processed_pseudogene-TTS (ENSMUSG00000109462.1) 679 ENSMUSG00000022322.8 ENSMUSG00000022322 ENSMUST00000207725 Shcbp1 protein_coding Interval_54997 chr14 76747664 76748454 + 0 NA Intergenic Intergenic -12072 ENSMUSG00000115709.1 ENSMUSG00000115709 ENSMUST00000228541 4930431P22Rik lincRNA Interval_80580 chr18 44404160 44404886 + 0 NA intron (ENSMUSG00000024472.9, intron 4 of 10) protein_coding-intron (ENSMUSG00000024472.9, intron 4 of 10) 24021 ENSMUSG00000024472.9 ENSMUSG00000024472 ENSMUST00000025350 Dcp2 protein_coding Interval_4701 chr1 77445930 77447398 + 0 NA intron (ENSMUSG00000026235.14, intron 2 of 15) protein_coding-intron (ENSMUSG00000026235.14, intron 3 of 17) 50104 ENSMUSG00000099141.1 ENSMUSG00000099141 ENSMUST00000184495 Mir6352 miRNA Interval_122510 chr5 23495409 23495810 + 0 NA exon (ENSMUSG00000029004.15, exon 1 of 1) protein_coding-exon (ENSMUSG00000029004.15, exon 1 of 1) -7886 ENSMUSG00000088170.1 ENSMUSG00000088170 ENSMUST00000157545 Gm25219 misc_RNA Interval_150184 chr7 107675153 107675725 + 0 NA intron (ENSMUSG00000036528.16, intron 1 of 6) protein_coding-intron (ENSMUSG00000036528.16, intron 3 of 24) 10128 ENSMUSG00000036528.16 ENSMUSG00000036528 ENSMUST00000208159 Ppfibp2 protein_coding Interval_43792 chr13 36501454 36501833 + 0 NA intron (ENSMUSG00000021420.13, intron 6 of 7) protein_coding-intron (ENSMUSG00000021420.13, intron 6 of 6) -42363 ENSMUSG00000114714.1 ENSMUSG00000114714 ENSMUST00000224213 Gm48763 TEC Interval_130185 chr5 124796433 124796744 + 0 NA TTS (ENSMUSG00000038011.15) protein_coding-TTS (ENSMUSG00000038011.15) 10035 ENSMUSG00000038011.15 ENSMUSG00000038011 ENSMUST00000196708 Dnah10 protein_coding Interval_167504 chr9 70109421 70109685 + 0 NA intron (ENSMUSG00000032224.15, intron 4 of 8) protein_coding-intron (ENSMUSG00000032224.15, intron 4 of 8) -6477 ENSMUSG00000032224.15 ENSMUSG00000032224 ENSMUST00000141775 Fam81a protein_coding Interval_21190 chr10 127129279 127129669 + 0 NA Intergenic Intergenic 4022 ENSMUSG00000112363.1 ENSMUSG00000112363 ENSMUST00000218307 Gm4178 processed_pseudogene Interval_113530 chr4 55593369 55593602 + 0 NA intron (ENSMUSG00000066176.3, intron 1 of 1) lincRNA-intron (ENSMUSG00000066176.3, intron 1 of 1) -11664 ENSMUSG00000085375.1 ENSMUSG00000085375 ENSMUST00000123620 Gm12506 lincRNA Interval_102045 chr3 16088565 16088996 + 0 NA Intergenic Intergenic -10456 ENSMUSG00000103535.1 ENSMUSG00000103535 ENSMUST00000195875 Gm37836 processed_pseudogene Interval_66488 chr16 34235190 34235688 + 0 NA intron (ENSMUSG00000061751.16, intron 11 of 30) protein_coding-intron (ENSMUSG00000061751.16, intron 14 of 59) -139411 ENSMUSG00000061751.16 ENSMUSG00000061751 ENSMUST00000132569 Kalrn protein_coding Interval_90512 chr2 30880948 30881827 + 0 NA TTS (ENSMUSG00000039476.13) protein_coding-TTS (ENSMUSG00000039476.13) 35943 ENSMUSG00000039476.13 ENSMUSG00000039476 ENSMUST00000137924 Prrx2 protein_coding Interval_41902 chr13 4110418 4111065 + 0 NA Intergenic Intergenic 13243 ENSMUSG00000113517.1 ENSMUSG00000113517 ENSMUST00000220915 Gm47905 TEC Interval_88414 chr2 4934189 4935074 + 0 NA intron (ENSMUSG00000026664.7, intron 6 of 8) protein_coding-intron (ENSMUSG00000026664.7, intron 6 of 8) -7543 ENSMUSG00000086670.1 ENSMUSG00000086670 ENSMUST00000142299 Gm13194 processed_pseudogene Interval_75709 chr17 70793629 70794609 + 0 NA intron (ENSMUSG00000003279.17, intron 7 of 9) protein_coding-intron (ENSMUSG00000003279.17, intron 12 of 14) 11940 ENSMUSG00000117231.1 ENSMUSG00000117231 ENSMUST00000233879 Gm41609 processed_transcript Interval_108662 chr3 129898434 129899177 + 0 NA Intergenic Intergenic -2696 ENSMUSG00000027997.9 ENSMUSG00000027997 ENSMUST00000152622 Casp6 protein_coding Interval_27466 chr11 68036091 68036788 + 0 NA promoter-TSS (ENSMUSG00000082266.1) processed_pseudogene-promoter-TSS (ENSMUSG00000082266.1) -729 ENSMUSG00000082266.1 ENSMUSG00000082266 ENSMUST00000119506 Gm12303 processed_pseudogene Interval_94069 chr2 83637408 83638188 + 0 NA Intergenic Intergenic -18822 ENSMUSG00000027091.14 ENSMUSG00000027091 ENSMUST00000134789 Zc3h15 protein_coding Interval_93409 chr2 72908202 72909300 + 0 NA Intergenic Intergenic 42236 ENSMUSG00000092851.1 ENSMUSG00000092851 ENSMUST00000175110 Gm25960 miRNA Interval_36708 chr12 52336935 52337192 + 0 NA Intergenic Intergenic 111062 ENSMUSG00000112139.1 ENSMUSG00000112139 ENSMUST00000218097 Gm47431 lincRNA Interval_48081 chr13 95853594 95853810 + 0 NA intron (ENSMUSG00000021676.10, intron 1 of 6) protein_coding-intron (ENSMUSG00000021676.10, intron 1 of 35) 43418 ENSMUSG00000065866.1 ENSMUSG00000065866 ENSMUST00000083932 Gm24032 snRNA Interval_162752 chr9 8520741 8520970 + 0 NA Intergenic Intergenic -23341 ENSMUSG00000031997.9 ENSMUSG00000031997 ENSMUST00000214596 Trpc6 protein_coding Interval_104100 chr3 58575567 58577362 + 0 NA promoter-TSS (ENSMUSG00000075700.9) protein_coding-promoter-TSS (ENSMUSG00000075700.9) -234 ENSMUSG00000075700.9 ENSMUSG00000075700 ENSMUST00000125815 Selenot protein_coding Interval_53207 chr14 55113501 55116009 + 0 NA intron (ENSMUSG00000022208.12, intron 2 of 2) protein_coding-intron (ENSMUSG00000022208.12, intron 2 of 5) 1825 ENSMUSG00000022208.12 ENSMUSG00000022208 ENSMUST00000133954 Jph4 protein_coding Interval_168228 chr9 78050540 78050787 + 0 NA Intergenic Intergenic -1261 ENSMUSG00000023333.8 ENSMUSG00000023333 ENSMUST00000024104 Gcm1 protein_coding Interval_109516 chr3 143413428 143413717 + 0 NA Intergenic Intergenic 4171 ENSMUSG00000106210.1 ENSMUSG00000106210 ENSMUST00000199380 1700001N15Rik lincRNA Interval_82504 chr18 74721791 74723434 + 0 NA TTS (ENSMUSG00000025885.18) protein_coding-TTS (ENSMUSG00000025885.18) 8993 ENSMUSG00000025885.18 ENSMUSG00000025885 ENSMUST00000154986 Myo5b protein_coding Interval_110482 chr3 159358011 159358312 + 0 NA Intergenic Intergenic -133257 ENSMUSG00000104864.1 ENSMUSG00000104864 ENSMUST00000197367 Gm43655 processed_pseudogene Interval_77672 chr17 93986398 93987661 + 0 NA Intergenic Intergenic 145242 ENSMUSG00000117543.1 ENSMUSG00000117543 ENSMUST00000235005 Gm50004 processed_pseudogene Interval_38730 chr12 81683198 81684471 + 0 NA Intergenic Intergenic 36218 ENSMUSG00000113184.1 ENSMUSG00000113184 ENSMUST00000221438 Gm49654 lincRNA Interval_52980 chr14 52580273 52581014 + 0 NA promoter-TSS (ENSMUSG00000076760.2) TR_V_gene-promoter-TSS (ENSMUSG00000076760.2) -22 ENSMUSG00000076760.2 ENSMUSG00000076760 ENSMUST00000103569 Trav3-1 TR_V_gene Interval_43060 chr13 23533704 23536321 + 0 NA promoter-TSS (ENSMUSG00000099517.2) protein_coding-promoter-TSS (ENSMUSG00000099517.2) -410 ENSMUSG00000099517.2 ENSMUSG00000099517 ENSMUST00000080859 H3c8 protein_coding Interval_162713 chr9 7960520 7962070 + 0 NA intron (ENSMUSG00000053110.13, intron 4 of 8) protein_coding-intron (ENSMUSG00000053110.13, intron 4 of 8) -4543 ENSMUSG00000092185.1 ENSMUSG00000092185 ENSMUST00000174760 Gm20416 processed_transcript Interval_72313 chr17 29123429 29123686 + 0 NA intron (ENSMUSG00000064147.7, intron 2 of 2) protein_coding-intron (ENSMUSG00000064147.7, intron 2 of 2) -11499 ENSMUSG00000064147.7 ENSMUSG00000064147 ENSMUST00000233567 Rab44 protein_coding Interval_13961 chr10 25085931 25087193 + 0 NA Intergenic Intergenic 32422 ENSMUSG00000093282.1 ENSMUSG00000093282 ENSMUST00000175541 Gm22566 miRNA Interval_8140 chr1 136007430 136008512 + 0 NA promoter-TSS (ENSMUSG00000026411.17) protein_coding-promoter-TSS (ENSMUSG00000026411.17) -179 ENSMUSG00000026411.17 ENSMUSG00000026411 ENSMUST00000140545 Tmem9 protein_coding Interval_117366 chr4 123279306 123279595 + 0 NA intron (ENSMUSG00000011257.19, intron 2 of 2) protein_coding-intron (ENSMUSG00000011257.19, intron 2 of 2) -3395 ENSMUSG00000011257.19 ENSMUSG00000011257 ENSMUST00000146156 Pabpc4 protein_coding Interval_161 JH584304.1 33913 35309 + 0 NA NA NA NA NA Interval_155647 chr8 35587409 35589493 + 0 NA promoter-TSS (ENSMUSG00000070056.6) protein_coding-promoter-TSS (ENSMUSG00000070056.6) -505 ENSMUSG00000070056.6 ENSMUSG00000070056 ENSMUST00000154989 Mfhas1 protein_coding Interval_80124 chr18 37746923 37747690 + 0 NA exon (ENSMUSG00000097330.2, exon 2 of 2) processed_transcript-exon (ENSMUSG00000097330.2, exon 2 of 2) 313 ENSMUSG00000102222.1 ENSMUSG00000102222 ENSMUST00000193404 Pcdhga10 protein_coding Interval_174513 chrX 155215461 155216984 + 0 NA exon (ENSMUSG00000025283.15, exon 1 of 6) protein_coding-exon (ENSMUSG00000025283.15, exon 1 of 6) 227 ENSMUSG00000025283.15 ENSMUSG00000025283 ENSMUST00000123337 Sat1 protein_coding Interval_10607 chr1 172188880 172189170 + 0 NA TTS (ENSMUSG00000026554.15) protein_coding-TTS (ENSMUSG00000026554.15) 17672 ENSMUSG00000013698.12 ENSMUSG00000013698 ENSMUST00000152432 Pea15a protein_coding Interval_30929 chr11 97265099 97265452 + 0 NA intron (ENSMUSG00000001441.13, intron 2 of 5) protein_coding-intron (ENSMUSG00000001441.13, intron 2 of 22) -14853 ENSMUSG00000086680.2 ENSMUSG00000086680 ENSMUST00000133160 Gm11592 antisense Interval_108694 chr3 130278269 130278559 + 0 NA intron (ENSMUSG00000058897.18, intron 2 of 37) protein_coding-intron (ENSMUSG00000058897.18, intron 2 of 37) 72949 ENSMUSG00000065788.1 ENSMUSG00000065788 ENSMUST00000083854 Gm22682 snRNA Interval_170789 chr9 110774760 110775852 + 0 NA Intergenic Intergenic -22860 ENSMUSG00000044664.7 ENSMUSG00000044664 ENSMUST00000035715 Prss42 protein_coding Interval_38753 chr12 81927748 81928351 + 0 NA intron (ENSMUSG00000021140.9, intron 1 of 25) protein_coding-intron (ENSMUSG00000021140.9, intron 6 of 35) -45138 ENSMUSG00000021140.9 ENSMUSG00000021140 ENSMUST00000222468 Pcnx protein_coding Interval_33883 chr11 119190367 119190775 + 0 NA intron (ENSMUSG00000039976.4, intron 3 of 11) protein_coding-intron (ENSMUSG00000039976.4, intron 3 of 11) -6055 ENSMUSG00000085548.1 ENSMUSG00000085548 ENSMUST00000151091 Gm11753 sense_intronic Interval_80863 chr18 49630063 49630350 + 0 NA Intergenic Intergenic -48357 ENSMUSG00000088904.1 ENSMUSG00000088904 ENSMUST00000158279 Gm25440 snRNA Interval_78942 chr18 22297008 22297436 + 0 NA Intergenic Intergenic -47024 ENSMUSG00000045215.17 ENSMUSG00000045215 ENSMUST00000097655 Asxl3 protein_coding Interval_120681 chr4 150072660 150073583 + 0 NA Intergenic Intergenic 4582 ENSMUSG00000102813.1 ENSMUSG00000102813 ENSMUST00000194216 Gm37795 TEC Interval_166448 chr9 59566899 59567555 + 0 NA Intergenic Intergenic 27687 ENSMUSG00000025232.8 ENSMUSG00000025232 ENSMUST00000026262 Hexa protein_coding Interval_123767 chr5 35361714 35362379 + 0 NA exon (ENSMUSG00000106762.3, exon 1 of 4) lincRNA-exon (ENSMUSG00000106762.3, exon 1 of 4) 493 ENSMUSG00000106762.3 ENSMUSG00000106762 ENSMUST00000201921 4930478P22Rik lincRNA Interval_49711 chr13 114150492 114151610 + 0 NA intron (ENSMUSG00000114213.1, intron 1 of 13) protein_coding-intron (ENSMUSG00000042348.10, intron 4 of 4) 541 ENSMUSG00000114213.1 ENSMUSG00000114213 ENSMUST00000225044 A430090L17Rik antisense Interval_80909 chr18 50064506 50066071 + 0 NA intron (ENSMUSG00000062210.13, intron 3 of 3) protein_coding-intron (ENSMUSG00000062210.13, intron 1 of 1) -11444 ENSMUSG00000086600.8 ENSMUSG00000086600 ENSMUST00000147073 C030005K06Rik processed_transcript Interval_162490 chr9 3237349 3238399 + 0 NA Intergenic Intergenic 4528 ENSMUSG00000110646.1 ENSMUSG00000110646 ENSMUST00000212589 Olfr369-ps1 unprocessed_pseudogene Interval_136434 chr6 54424931 54425525 + 0 NA exon (ENSMUSG00000073067.10, exon 2 of 2) processed_transcript-exon (ENSMUSG00000073067.10, exon 2 of 2) -27655 ENSMUSG00000086040.8 ENSMUSG00000086040 ENSMUST00000131043 Wipf3 protein_coding Interval_90036 chr2 27447909 27448508 + 0 NA exon (ENSMUSG00000026918.16, exon 12 of 12) protein_coding-exon (ENSMUSG00000026918.16, exon 12 of 12) 2422 ENSMUSG00000098812.1 ENSMUSG00000098812 ENSMUST00000183455 Mir7578 miRNA Interval_114919 chr4 86932804 86933491 + 0 NA TTS (ENSMUSG00000038007.14) protein_coding-TTS (ENSMUSG00000038007.14) 2456 ENSMUSG00000038007.14 ENSMUSG00000038007 ENSMUST00000135874 Acer2 protein_coding Interval_8195 chr1 136416724 136416915 + 0 NA exon (ENSMUSG00000026404.12, exon 2 of 8) protein_coding-exon (ENSMUSG00000026404.12, exon 2 of 8) -1325 ENSMUSG00000097403.2 ENSMUSG00000097403 ENSMUST00000194227 9230116N13Rik processed_transcript Interval_92970 chr2 69047276 69049406 + 0 NA intron (ENSMUSG00000027035.10, intron 5 of 10) protein_coding-intron (ENSMUSG00000027035.10, intron 5 of 9) 30245 ENSMUSG00000102662.1 ENSMUSG00000102662 ENSMUST00000193253 Gm38377 TEC Interval_147917 chr7 75537029 75537245 + 0 NA intron (ENSMUSG00000066406.16, intron 2 of 5) protein_coding-intron (ENSMUSG00000066406.16, intron 2 of 36) -23477 ENSMUSG00000108557.1 ENSMUSG00000108557 ENSMUST00000205544 Gm44835 TEC Interval_23840 chr11 27014364 27014608 + 0 NA Intergenic Intergenic -37211 ENSMUSG00000083895.1 ENSMUSG00000083895 ENSMUST00000120189 Gm12074 processed_pseudogene Interval_124808 chr5 54567120 54567734 + 0 NA Intergenic Intergenic -2478 ENSMUSG00000106529.1 ENSMUSG00000106529 ENSMUST00000196759 Gm18451 processed_pseudogene Interval_95511 chr2 110812432 110812845 + 0 NA intron (ENSMUSG00000074968.11, intron 4 of 17) protein_coding-intron (ENSMUSG00000074968.11, intron 4 of 26) -51074 ENSMUSG00000074968.11 ENSMUSG00000074968 ENSMUST00000140777 Ano3 protein_coding Interval_79093 chr18 24470591 24471446 + 0 NA exon (ENSMUSG00000024273.8, exon 1 of 4) protein_coding-exon (ENSMUSG00000024273.8, exon 1 of 4) 168 ENSMUSG00000024273.8 ENSMUSG00000024273 ENSMUST00000097646 2700062C07Rik protein_coding Interval_8625 chr1 144406456 144407381 + 0 NA Intergenic Intergenic -94482 ENSMUSG00000100441.1 ENSMUSG00000100441 ENSMUST00000187999 Gm7266 processed_pseudogene Interval_38620 chr12 80607017 80609435 + 0 NA intron (ENSMUSG00000021130.8, intron 3 of 3) protein_coding-intron (ENSMUSG00000021130.8, intron 3 of 3) -5070 ENSMUSG00000112606.1 ENSMUSG00000112606 ENSMUST00000218548 Gm46364 processed_pseudogene Interval_121608 chr5 3880491 3881867 + 0 NA Intergenic Intergenic 5817 ENSMUSG00000104699.1 ENSMUSG00000104699 ENSMUST00000199852 Rps4x-ps processed_pseudogene Interval_147876 chr7 74923955 74924829 + 0 NA Intergenic Intergenic 38128 ENSMUSG00000108716.1 ENSMUSG00000108716 ENSMUST00000206177 Gm44902 processed_pseudogene Interval_92539 chr2 60427124 60427588 + 0 NA intron (ENSMUSG00000054580.14, intron 25 of 29) protein_coding-intron (ENSMUSG00000054580.14, intron 25 of 29) 15831 ENSMUSG00000087283.1 ENSMUSG00000087283 ENSMUST00000131457 Gm13580 antisense Interval_61271 chr15 80394976 80395795 + 0 NA exon (ENSMUSG00000022416.15, exon 37 of 37) protein_coding-exon (ENSMUSG00000022416.15, exon 37 of 37) 6057 ENSMUSG00000022416.15 ENSMUSG00000022416 ENSMUST00000160175 Cacna1i protein_coding Interval_121408 chr4 155591296 155592778 + 0 NA Intergenic Intergenic 5260 ENSMUSG00000029063.16 ENSMUSG00000029063 ENSMUST00000152297 Nadk protein_coding Interval_48557 chr13 100208683 100209032 + 0 NA Intergenic Intergenic -6896 ENSMUSG00000078945.10 ENSMUSG00000078945 ENSMUST00000167986 Naip2 protein_coding Interval_62105 chr15 86713424 86713645 + 0 NA Intergenic Intergenic 9243 ENSMUSG00000116040.1 ENSMUSG00000116040 ENSMUST00000229409 Gm49464 lincRNA Interval_25464 chr11 48771465 48771922 + 0 NA Intergenic Intergenic -17979 ENSMUSG00000082454.3 ENSMUSG00000082454 ENSMUST00000120566 Gm12183 processed_pseudogene Interval_142917 chr6 146939160 146939933 + 0 NA intron (ENSMUSG00000016487.15, intron 3 of 4) protein_coding-intron (ENSMUSG00000016487.15, intron 2 of 26) 14868 ENSMUSG00000040163.14 ENSMUSG00000040163 ENSMUST00000111622 1700034J05Rik protein_coding Interval_82925 chr18 79323783 79324320 + 0 NA Intergenic Intergenic -18889 ENSMUSG00000117828.1 ENSMUSG00000117828 ENSMUST00000236697 Gm2116 processed_pseudogene Interval_23982 chr11 29172024 29173674 + 0 NA promoter-TSS (ENSMUSG00000020463.15) protein_coding-promoter-TSS (ENSMUSG00000020463.15) 709 ENSMUSG00000086725.1 ENSMUSG00000086725 ENSMUST00000129876 A630052C17Rik processed_transcript Interval_45705 chr13 57078712 57078917 + 0 NA Intergenic Intergenic -147866 ENSMUSG00000077279.1 ENSMUSG00000077279 ENSMUST00000104091 Gm22777 snoRNA Interval_80202 chr18 38209621 38212964 + 0 NA promoter-TSS (ENSMUSG00000051375.15) protein_coding-promoter-TSS (ENSMUSG00000051375.15) -2412 ENSMUSG00000089983.2 ENSMUSG00000089983 ENSMUST00000236988 2010320O07Rik lincRNA Interval_15011 chr10 41908950 41909697 + 0 NA TTS (ENSMUSG00000038332.13) protein_coding-TTS (ENSMUSG00000038332.13) 10950 ENSMUSG00000038332.13 ENSMUSG00000038332 ENSMUST00000214835 Sesn1 protein_coding Interval_135113 chr6 35539050 35540298 + 0 NA exon (ENSMUSG00000029840.8, exon 1 of 4) protein_coding-exon (ENSMUSG00000029840.8, exon 1 of 4) 125 ENSMUSG00000029840.8 ENSMUSG00000029840 ENSMUST00000201026 Mtpn protein_coding Interval_51836 chr14 32628273 32629222 + 0 NA exon (ENSMUSG00000041730.14, exon 7 of 7) protein_coding-exon (ENSMUSG00000041730.14, exon 7 of 7) 28789 ENSMUSG00000041730.14 ENSMUSG00000041730 ENSMUST00000228878 Prrxl1 protein_coding Interval_53259 chr14 55628774 55630014 + 0 NA exon (ENSMUSG00000002319.16, exon 20 of 30) protein_coding-exon (ENSMUSG00000002319.16, exon 20 of 30) 816 ENSMUSG00000002319.16 ENSMUSG00000002319 ENSMUST00000125133 Ipo4 protein_coding Interval_102470 chr3 27073056 27073332 + 0 NA Intergenic Intergenic -25241 ENSMUSG00000102908.1 ENSMUSG00000102908 ENSMUST00000193221 Gm7558 processed_pseudogene Interval_17988 chr10 81257186 81258296 + 0 NA promoter-TSS (ENSMUSG00000004933.17) protein_coding-promoter-TSS (ENSMUSG00000004933.17) -474 ENSMUSG00000004933.17 ENSMUSG00000004933 ENSMUST00000148735 Matk protein_coding Interval_51355 chr14 26976959 26978309 + 0 NA Intergenic Intergenic -7129 ENSMUSG00000040760.11 ENSMUSG00000040760 ENSMUST00000142261 Appl1 protein_coding Interval_127315 chr5 102692410 102692621 + 0 NA intron (ENSMUSG00000057315.14, intron 2 of 8) protein_coding-intron (ENSMUSG00000057315.14, intron 2 of 8) -116534 ENSMUSG00000057315.14 ENSMUSG00000057315 ENSMUST00000070000 Arhgap24 protein_coding Interval_5678 chr1 90852420 90853247 + 0 NA Intergenic Intergenic -8862 ENSMUSG00000048126.16 ENSMUSG00000048126 ENSMUST00000187753 Col6a3 protein_coding Interval_65699 chr16 25565235 25566492 + 0 NA Intergenic Intergenic -117902 ENSMUSG00000022510.14 ENSMUSG00000022510 ENSMUST00000115306 Trp63 protein_coding Interval_132594 chr5 146603619 146604082 + 0 NA Intergenic Intergenic -3748 ENSMUSG00000105907.1 ENSMUSG00000105907 ENSMUST00000200363 Gm34333 lincRNA Interval_10855 chr1 176055787 176056028 + 0 NA intron (ENSMUSG00000055214.15, intron 4 of 4) protein_coding-intron (ENSMUSG00000055214.15, intron 4 of 9) -23184 ENSMUSG00000104363.1 ENSMUSG00000104363 ENSMUST00000192680 Gm38081 TEC Interval_42167 chr13 9421084 9421812 + 0 NA intron (ENSMUSG00000048264.16, intron 1 of 36) protein_coding-intron (ENSMUSG00000048264.16, intron 1 of 38) 8931 ENSMUSG00000112955.1 ENSMUSG00000112955 ENSMUST00000221027 Gm48889 TEC Interval_7815 chr1 133885835 133886268 + 0 NA Intergenic Intergenic -20480 ENSMUSG00000090208.1 ENSMUSG00000090208 ENSMUST00000160564 Gm15851 antisense Interval_44581 chr13 46417953 46419368 + 0 NA exon (ENSMUSG00000038132.6, exon 1 of 4) protein_coding-exon (ENSMUSG00000038132.6, exon 1 of 4) -3162 ENSMUSG00000038132.6 ENSMUSG00000038132 ENSMUST00000225890 Rbm24 protein_coding Interval_156058 chr8 43264806 43265096 + 0 NA Intergenic Intergenic 41985 ENSMUSG00000051176.6 ENSMUSG00000051176 ENSMUST00000082120 Zfp42 protein_coding Interval_128104 chr5 110893542 110894967 + 0 NA intron (ENSMUSG00000033209.17, intron 2 of 22) protein_coding-intron (ENSMUSG00000033209.17, intron 2 of 23) -10990 ENSMUSG00000081104.1 ENSMUSG00000081104 ENSMUST00000121895 Gm15989 processed_pseudogene Interval_132588 chr5 146525490 146525679 + 0 NA promoter-TSS (ENSMUSG00000079091.1) protein_coding-promoter-TSS (ENSMUSG00000079091.1) -217 ENSMUSG00000079091.1 ENSMUSG00000079091 ENSMUST00000110596 Gm3404 protein_coding Interval_29949 chr11 87980151 87980348 + 0 NA TTS (ENSMUSG00000020483.14) protein_coding-TTS (ENSMUSG00000020483.14) 3763 ENSMUSG00000020483.14 ENSMUSG00000020483 ENSMUST00000146941 Dynll2 protein_coding Interval_56444 chr14 118804099 118804850 + 0 NA intron (ENSMUSG00000022132.15, intron 1 of 3) protein_coding-intron (ENSMUSG00000022132.15, intron 1 of 4) 22557 ENSMUSG00000077661.1 ENSMUSG00000077661 ENSMUST00000104473 n-R5s51 rRNA Interval_30194 chr11 90411444 90411877 + 0 NA Intergenic Intergenic -23687 ENSMUSG00000003949.16 ENSMUSG00000003949 ENSMUST00000145786 Hlf protein_coding Interval_55113 chr14 78234796 78235779 + 0 NA Intergenic Intergenic 11024 ENSMUSG00000080402.1 ENSMUSG00000080402 ENSMUST00000116752 Gm23652 miRNA Interval_52354 chr14 45372914 45373215 + 0 NA intron (ENSMUSG00000053205.9, intron 1 of 1) protein_coding-intron (ENSMUSG00000053205.9, intron 11 of 11) 10379 ENSMUSG00000037722.8 ENSMUSG00000037722 ENSMUST00000226590 Gnpnat1 protein_coding Interval_63383 chr15 100735726 100735982 + 0 NA Intergenic Intergenic -3117 ENSMUSG00000116504.1 ENSMUSG00000116504 ENSMUST00000230334 I730030J21Rik processed_transcript Interval_85933 chr19 33463454 33463681 + 0 NA intron (ENSMUSG00000086875.2, intron 4 of 5) unprocessed_pseudogene-intron (ENSMUSG00000086875.2, intron 4 of 5) 9624 ENSMUSG00000086875.2 ENSMUSG00000086875 ENSMUST00000156818 Lipo5 unprocessed_pseudogene Interval_108322 chr3 123780482 123781095 + 0 NA Intergenic Intergenic 19461 ENSMUSG00000080842.2 ENSMUSG00000080842 ENSMUST00000118944 Gm15400 processed_pseudogene Interval_13631 chr10 20294158 20294406 + 0 NA Intergenic Intergenic 1497 ENSMUSG00000111064.1 ENSMUSG00000111064 ENSMUST00000214614 Gm30285 processed_pseudogene Interval_97091 chr2 131171003 131171968 + 0 NA TTS (ENSMUSG00000027329.9) protein_coding-TTS (ENSMUSG00000027329.9) 3168 ENSMUSG00000027329.9 ENSMUSG00000027329 ENSMUST00000127987 Spef1 protein_coding Interval_6614 chr1 118320624 118322404 + 0 NA promoter-TSS (ENSMUSG00000026377.12) protein_coding-promoter-TSS (ENSMUSG00000026377.12) -638 ENSMUSG00000026377.12 ENSMUSG00000026377 ENSMUST00000161495 Nifk protein_coding Interval_98275 chr2 150723536 150724838 + 0 NA exon (ENSMUSG00000100630.1, exon 1 of 1) lincRNA-exon (ENSMUSG00000100630.1, exon 1 of 1) 434 ENSMUSG00000100630.1 ENSMUSG00000100630 ENSMUST00000187349 Gm28450 lincRNA Interval_171219 chr9 115294059 115294996 + 0 NA intron (ENSMUSG00000032437.10, intron 1 of 15) protein_coding-intron (ENSMUSG00000032437.10, intron 1 of 15) -12546 ENSMUSG00000111564.1 ENSMUSG00000111564 ENSMUST00000214793 Stmn1-rs1 processed_pseudogene Interval_26973 chr11 61980811 61981682 + 0 NA intron (ENSMUSG00000042331.13, intron 1 of 3) protein_coding-intron (ENSMUSG00000042331.13, intron 1 of 2) -6896 ENSMUSG00000083212.3 ENSMUSG00000083212 ENSMUST00000120062 Gm12274 processed_pseudogene Interval_133210 chr5 150576420 150577114 + 0 NA exon (ENSMUSG00000041132.11, exon 2 of 5) protein_coding-exon (ENSMUSG00000041132.11, exon 2 of 5) -5669 ENSMUSG00000106980.1 ENSMUSG00000106980 ENSMUST00000201213 Gm43690 lincRNA Interval_147943 chr7 75777966 75778405 + 0 NA intron (ENSMUSG00000097415.2, intron 2 of 2) lincRNA-intron (ENSMUSG00000097415.2, intron 2 of 2) -5847 ENSMUSG00000097116.1 ENSMUSG00000097116 ENSMUST00000180744 Gm26729 processed_pseudogene Interval_169958 chr9 103225391 103226045 + 0 NA intron (ENSMUSG00000032554.15, intron 4 of 6) protein_coding-intron (ENSMUSG00000032554.15, intron 4 of 16) -13712 ENSMUSG00000032554.15 ENSMUSG00000032554 ENSMUST00000126359 Trf protein_coding Interval_2204 chr1 37006653 37007314 + 0 NA Intergenic Intergenic 1544 ENSMUSG00000095944.1 ENSMUSG00000095944 ENSMUST00000177688 n-R5s210 rRNA Interval_12664 chr10 4220612 4220978 + 0 NA Intergenic Intergenic -7681 ENSMUSG00000111266.1 ENSMUSG00000111266 ENSMUST00000213553 Gm30570 lincRNA Interval_99344 chr2 159670387 159670625 + 0 NA Intergenic Intergenic 107701 ENSMUSG00000083451.1 ENSMUSG00000083451 ENSMUST00000119101 Gm11445 processed_pseudogene Interval_42556 chr13 15395142 15395668 + 0 NA intron (ENSMUSG00000113410.1, intron 3 of 6) lincRNA-intron (ENSMUSG00000113410.1, intron 3 of 6) 19781 ENSMUSG00000113410.1 ENSMUSG00000113410 ENSMUST00000222267 Gm20043 lincRNA Interval_122453 chr5 22965522 22965743 + 0 NA intron (ENSMUSG00000106379.1, intron 1 of 3) protein_coding-intron (ENSMUSG00000106379.1, intron 1 of 3) -33619 ENSMUSG00000060879.3 ENSMUSG00000060879 ENSMUST00000075377 Gm6564 processed_pseudogene Interval_44616 chr13 46735775 46736843 + 0 NA Intergenic Intergenic -28492 ENSMUSG00000021374.10 ENSMUSG00000021374 ENSMUST00000183299 Nup153 protein_coding Interval_106661 chr3 98247461 98247790 + 0 NA promoter-TSS (ENSMUSG00000104842.1) processed_pseudogene-promoter-TSS (ENSMUSG00000104842.1) -974 ENSMUSG00000104842.1 ENSMUSG00000104842 ENSMUST00000199771 Gm42821 processed_pseudogene Interval_13483 chr10 18562820 18563182 + 0 NA Intergenic Intergenic 2954 ENSMUSG00000111173.1 ENSMUSG00000111173 ENSMUST00000215943 Gm48297 processed_pseudogene Interval_105738 chr3 89077114 89077558 + 0 NA exon (ENSMUSG00000028053.13, exon 27 of 27) protein_coding-exon (ENSMUSG00000028053.13, exon 27 of 27) 12405 ENSMUSG00000041263.14 ENSMUSG00000041263 ENSMUST00000196043 Rusc1 protein_coding Interval_97150 chr2 131776565 131776979 + 0 NA Intergenic Intergenic -54934 ENSMUSG00000086831.1 ENSMUSG00000086831 ENSMUST00000138080 Gm14280 antisense Interval_73750 chr17 43219383 43220288 + 0 NA Intergenic Intergenic -50494 ENSMUSG00000041293.5 ENSMUSG00000041293 ENSMUST00000047399 Adgrf1 protein_coding Interval_122427 chr5 22538685 22539336 + 0 NA intron (ENSMUSG00000029012.11, intron 3 of 9) protein_coding-intron (ENSMUSG00000029012.11, intron 3 of 13) -4167 ENSMUSG00000096346.1 ENSMUSG00000096346 ENSMUST00000178586 Gm22887 snRNA Interval_132701 chr5 147269910 147271528 + 0 NA intron (ENSMUSG00000029644.7, intron 1 of 1) protein_coding-intron (ENSMUSG00000029644.7, intron 1 of 1) 760 ENSMUSG00000029644.7 ENSMUSG00000029644 ENSMUST00000085591 Pdx1 protein_coding Interval_117452 chr4 123767902 123769299 + 0 NA Intergenic Intergenic -18369 ENSMUSG00000023075.9 ENSMUSG00000023075 ENSMUST00000153472 Akirin1 protein_coding Interval_20925 chr10 122054146 122055172 + 0 NA Intergenic Intergenic -7344 ENSMUSG00000020121.15 ENSMUSG00000020121 ENSMUST00000162710 Srgap1 protein_coding Interval_126483 chr5 88893782 88894191 + 0 NA intron (ENSMUSG00000060961.16, intron 1 of 25) protein_coding-intron (ENSMUSG00000060961.16, intron 1 of 24) 7500 ENSMUSG00000060961.16 ENSMUSG00000060961 ENSMUST00000134303 Slc4a4 protein_coding Interval_141664 chr6 132875086 132876174 + 0 NA Intergenic Intergenic 7622 ENSMUSG00000062952.1 ENSMUSG00000062952 ENSMUST00000082014 Tas2r110 protein_coding Interval_37680 chr12 71051149 71051432 + 0 NA intron (ENSMUSG00000048118.17, intron 1 of 9) protein_coding-intron (ENSMUSG00000048118.17, intron 11 of 23) 2949 ENSMUSG00000048118.17 ENSMUSG00000048118 ENSMUST00000135709 Arid4a protein_coding Interval_137178 chr6 69293327 69293660 + 0 NA Intergenic Intergenic -9174 ENSMUSG00000076548.1 ENSMUSG00000076548 ENSMUST00000103349 Igkv4-69 IG_V_gene Interval_151834 chr7 127002913 127004947 + 0 NA intron (ENSMUSG00000092534.8, intron 3 of 4) protein_coding-intron (ENSMUSG00000030681.18, intron 1 of 3) 10620 ENSMUSG00000030681.18 ENSMUSG00000030681 ENSMUST00000206511 Mvp protein_coding Interval_28131 chr11 73044017 73044964 + 0 NA Intergenic Intergenic -3383 ENSMUSG00000020783.14 ENSMUSG00000020783 ENSMUST00000151823 Ncbp3 protein_coding Interval_153111 chr7 141428910 141430066 + 0 NA promoter-TSS (ENSMUSG00000060240.12) protein_coding-promoter-TSS (ENSMUSG00000060240.12) -137 ENSMUSG00000060240.12 ENSMUSG00000060240 ENSMUST00000137488 Cend1 protein_coding Interval_85091 chr19 22732044 22732258 + 0 NA intron (ENSMUSG00000052387.16, intron 5 of 24) protein_coding-intron (ENSMUSG00000052387.16, intron 5 of 26) -18454 ENSMUSG00000065507.3 ENSMUSG00000065507 ENSMUST00000083573 Mir204 miRNA Interval_84343 chr19 10231105 10232957 + 0 NA intron (ENSMUSG00000036098.15, intron 1 of 24) protein_coding-intron (ENSMUSG00000036098.15, intron 1 of 26) 8717 ENSMUSG00000036098.15 ENSMUSG00000036098 ENSMUST00000189439 Myrf protein_coding Interval_89874 chr2 26139663 26140966 + 0 NA TTS (ENSMUSG00000087595.1) lincRNA-TTS (ENSMUSG00000087595.1) -1512 ENSMUSG00000087679.2 ENSMUSG00000087679 ENSMUST00000163836 Tmem250-ps protein_coding Interval_89518 chr2 21557642 21558172 + 0 NA intron (ENSMUSG00000045967.11, intron 3 of 7) protein_coding-intron (ENSMUSG00000045967.11, intron 3 of 10) -114378 ENSMUSG00000080846.1 ENSMUSG00000080846 ENSMUST00000118053 Gm13379 processed_pseudogene Interval_307 chr1 3445109 3446813 + 0 NA intron (ENSMUSG00000051951.5, intron 1 of 2) protein_coding-intron (ENSMUSG00000051951.5, intron 1 of 2) -20626 ENSMUSG00000089699.1 ENSMUSG00000089699 ENSMUST00000161581 Gm1992 antisense Interval_133438 chr6 5019000 5020740 + 0 NA intron (ENSMUSG00000032827.15, intron 1 of 17) protein_coding-intron (ENSMUSG00000032827.15, intron 2 of 15) 60887 ENSMUSG00000097396.1 ENSMUSG00000097396 ENSMUST00000180645 Gm26556 TEC Interval_89754 chr2 25230905 25231540 + 0 NA TTS (ENSMUSG00000006469.13) protein_coding-TTS (ENSMUSG00000006469.13) 2996 ENSMUSG00000006469.13 ENSMUSG00000006469 ENSMUST00000142095 Slc34a3 protein_coding Interval_41377 chr12 113165081 113166006 + 0 NA TTS (ENSMUSG00000037466.13) protein_coding-TTS (ENSMUSG00000037466.13) 7763 ENSMUSG00000105111.1 ENSMUSG00000105111 ENSMUST00000198975 Gm43310 processed_pseudogene Interval_47635 chr13 90457286 90457597 + 0 NA Intergenic Intergenic -39341 ENSMUSG00000114204.1 ENSMUSG00000114204 ENSMUST00000225049 Gm47520 lincRNA Interval_164312 chr9 35222772 35224219 + 0 NA TTS (ENSMUSG00000050471.17) protein_coding-TTS (ENSMUSG00000050471.17) 11601 ENSMUSG00000032042.11 ENSMUSG00000032042 ENSMUST00000132799 Srpr protein_coding Interval_74211 chr17 47496657 47497001 + 0 NA intron (ENSMUSG00000023980.7, intron 4 of 6) protein_coding-intron (ENSMUSG00000023980.7, intron 4 of 8) 5443 ENSMUSG00000023980.7 ENSMUSG00000023980 ENSMUST00000233675 Taf8 protein_coding Interval_67856 chr16 58108597 58109466 + 0 NA Intergenic Intergenic -103008 ENSMUSG00000116770.1 ENSMUSG00000116770 ENSMUST00000231442 Gm49576 lincRNA Interval_116639 chr4 116220707 116222126 + 0 NA promoter-TSS (ENSMUSG00000028698.13) protein_coding-promoter-TSS (ENSMUSG00000028698.13) -202 ENSMUSG00000028698.13 ENSMUSG00000028698 ENSMUST00000106490 Pik3r3 protein_coding Interval_54253 chr14 66909772 66912381 + 0 NA promoter-TSS (ENSMUSG00000046204.14) protein_coding-promoter-TSS (ENSMUSG00000046204.14) -166 ENSMUSG00000046204.14 ENSMUSG00000046204 ENSMUST00000165831 Pnma2 protein_coding Interval_51434 chr14 27484367 27485234 + 0 NA promoter-TSS (ENSMUSG00000046753.10) protein_coding-promoter-TSS (ENSMUSG00000046753.10) -925 ENSMUSG00000046753.10 ENSMUSG00000046753 ENSMUST00000050480 Ccdc66 protein_coding Interval_120211 chr4 144312268 144313461 + 0 NA Intergenic Intergenic -7923 ENSMUSG00000080943.1 ENSMUSG00000080943 ENSMUST00000119195 Gm13130 unprocessed_pseudogene Interval_91019 chr2 34399454 34400512 + 0 NA Intergenic Intergenic -6889 ENSMUSG00000038696.14 ENSMUSG00000038696 ENSMUST00000129633 Mapkap1 protein_coding Interval_68045 chr16 64668497 64668705 + 0 NA Intergenic Intergenic -66193 ENSMUSG00000068167.6 ENSMUSG00000068167 ENSMUST00000089279 Csnka2ip protein_coding Interval_126305 chr5 86357584 86357793 + 0 NA intron (ENSMUSG00000061259.11, intron 1 of 9) protein_coding-intron (ENSMUSG00000061259.11, intron 1 of 9) -29952 ENSMUSG00000061259.11 ENSMUSG00000061259 ENSMUST00000031175 Tmprss11d protein_coding Interval_143930 chr7 18100877 18101173 + 0 NA intron (ENSMUSG00000108545.1, intron 3 of 3) antisense-intron (ENSMUSG00000108545.1, intron 3 of 4) 35086 ENSMUSG00000030366.10 ENSMUSG00000030366 ENSMUST00000108483 Ceacam12 protein_coding Interval_97932 chr2 145875087 145876640 + 0 NA intron (ENSMUSG00000001768.16, intron 1 of 2) protein_coding-intron (ENSMUSG00000001768.16, intron 9 of 12) -2423 ENSMUSG00000092758.1 ENSMUSG00000092758 ENSMUST00000175017 Gm25026 miRNA Interval_126428 chr5 88501893 88502181 + 0 NA exon (ENSMUSG00000029286.12, exon 10 of 10) protein_coding-exon (ENSMUSG00000029286.12, exon 10 of 10) 14062 ENSMUSG00000029286.12 ENSMUSG00000029286 ENSMUST00000031222 Enam protein_coding Interval_444 chr1 5348538 5348996 + 0 NA Intergenic Intergenic 41028 ENSMUSG00000104046.1 ENSMUSG00000104046 ENSMUST00000193241 Gm37567 TEC Interval_150253 chr7 109010519 109012097 + 0 NA intron (ENSMUSG00000031028.14, intron 1 of 11) protein_coding-intron (ENSMUSG00000031028.14, intron 1 of 11) 46516 ENSMUSG00000048330.14 ENSMUSG00000048330 ENSMUST00000129629 Ric3 protein_coding Interval_125225 chr5 65505790 65506820 + 0 NA intron (ENSMUSG00000037822.12, intron 1 of 2) protein_coding-intron (ENSMUSG00000037822.12, intron 1 of 1) 13209 ENSMUSG00000107195.1 ENSMUSG00000107195 ENSMUST00000200768 4930589O11Rik TEC Interval_29843 chr11 87209941 87210430 + 0 NA intron (ENSMUSG00000018548.15, intron 5 of 6) protein_coding-intron (ENSMUSG00000018548.15, intron 22 of 23) 20111 ENSMUSG00000018548.15 ENSMUSG00000018548 ENSMUST00000154138 Trim37 protein_coding Interval_110776 chr4 8249647 8250096 + 0 NA Intergenic Intergenic -10830 ENSMUSG00000041261.9 ENSMUSG00000041261 ENSMUST00000066674 Car8 protein_coding Interval_89758 chr2 25248625 25249049 + 0 NA promoter-TSS (ENSMUSG00000006471.18) protein_coding-promoter-TSS (ENSMUSG00000006471.18) -1974 ENSMUSG00000115018.2 ENSMUSG00000115018 ENSMUST00000228627 Ndor1 protein_coding Interval_157187 chr8 67359705 67359934 + 0 NA intron (ENSMUSG00000074292.4, intron 2 of 3) lincRNA-intron (ENSMUSG00000074292.4, intron 2 of 3) 5185 ENSMUSG00000074292.4 ENSMUSG00000074292 ENSMUST00000148610 Gm10660 lincRNA Interval_5063 chr1 84748974 84749388 + 0 NA promoter-TSS (ENSMUSG00000026219.14) protein_coding-promoter-TSS (ENSMUSG00000026219.14) -20305 ENSMUSG00000026219.14 ENSMUSG00000026219 ENSMUST00000187818 Trip12 protein_coding Interval_66304 chr16 33023462 33024331 + 0 NA promoter-TSS (ENSMUSG00000035578.16) protein_coding-promoter-TSS (ENSMUSG00000035578.16) 21993 ENSMUSG00000070225.1 ENSMUSG00000070225 ENSMUST00000093713 n-R5s33 rRNA Interval_122701 chr5 24749905 24752453 + 0 NA exon (ENSMUSG00000038135.4, exon 4 of 4) protein_coding-exon (ENSMUSG00000038135.4, exon 4 of 4) 145 ENSMUSG00000038135.4 ENSMUSG00000038135 ENSMUST00000047119 Crygn protein_coding Interval_107189 chr3 104448743 104450589 + 0 NA intron (ENSMUSG00000032913.13, intron 1 of 1) protein_coding-intron (ENSMUSG00000032913.13, intron 1 of 1) 27064 ENSMUSG00000105304.1 ENSMUSG00000105304 ENSMUST00000199385 Gm43696 sense_intronic Interval_87724 chr19 55438746 55439075 + 0 NA intron (ENSMUSG00000024983.10, intron 3 of 3) protein_coding-intron (ENSMUSG00000024983.10, intron 5 of 7) 122583 ENSMUSG00000024983.10 ENSMUSG00000024983 ENSMUST00000224396 Vti1a protein_coding Interval_41751 chr12 118665853 118666522 + 0 NA Intergenic Intergenic 63510 ENSMUSG00000114034.1 ENSMUSG00000114034 ENSMUST00000222831 Gm9267 processed_pseudogene Interval_170057 chr9 104122028 104124172 + 0 NA promoter-TSS (ENSMUSG00000090150.10) protein_coding-promoter-TSS (ENSMUSG00000090150.10) 350 ENSMUSG00000090150.10 ENSMUSG00000090150 ENSMUST00000128714 Acad11 protein_coding Interval_40106 chr12 101330366 101330568 + 0 NA intron (ENSMUSG00000113134.2, intron 13 of 21) transcribed_unprocessed_pseudogene-intron (ENSMUSG00000113134.2, intron 1 of 9) -74186 ENSMUSG00000047014.7 ENSMUSG00000047014 ENSMUST00000220820 Catsperb protein_coding Interval_150670 chr7 113219361 113219777 + 0 NA intron (ENSMUSG00000055116.8, intron 1 of 20) protein_coding-intron (ENSMUSG00000055116.8, intron 1 of 19) -15054 ENSMUSG00000055116.8 ENSMUSG00000055116 ENSMUST00000211547 Arntl protein_coding Interval_88358 chr2 4412771 4414055 + 0 NA intron (ENSMUSG00000026657.17, intron 1 of 1) protein_coding-intron (ENSMUSG00000026657.17, intron 1 of 23) -32346 ENSMUSG00000075826.1 ENSMUSG00000075826 ENSMUST00000101878 Gm23691 snRNA Interval_26577 chr11 59008887 59009240 + 0 NA intron (ENSMUSG00000061462.18, intron 81 of 103) protein_coding-intron (ENSMUSG00000061462.18, intron 81 of 103) 6153 ENSMUSG00000072902.4 ENSMUSG00000072902 ENSMUST00000101162 Gm10435 antisense Interval_52775 chr14 49733914 49734169 + 0 NA intron (ENSMUSG00000036242.15, intron 1 of 1) protein_coding-intron (ENSMUSG00000036242.15, intron 5 of 7) 3968 ENSMUSG00000115742.1 ENSMUSG00000115742 ENSMUST00000228396 Gm48950 TEC Interval_5794 chr1 91898739 91899062 + 0 NA Intergenic Intergenic -17360 ENSMUSG00000102745.1 ENSMUSG00000102745 ENSMUST00000193764 Gm37600 TEC Interval_92266 chr2 57586721 57587401 + 0 NA Intergenic Intergenic 42167 ENSMUSG00000081642.1 ENSMUSG00000081642 ENSMUST00000120373 Gm13532 processed_pseudogene Interval_11968 chr1 187883618 187883837 + 0 NA intron (ENSMUSG00000026610.13, intron 3 of 3) protein_coding-intron (ENSMUSG00000026610.13, intron 2 of 7) 125263 ENSMUSG00000103577.1 ENSMUSG00000103577 ENSMUST00000195397 9330162B11Rik antisense Interval_61353 chr15 81008572 81009907 + 0 NA promoter-TSS (ENSMUSG00000042303.19) protein_coding-promoter-TSS (ENSMUSG00000042303.19) -2829 ENSMUSG00000115976.1 ENSMUSG00000115976 ENSMUST00000230118 Gm31462 antisense Interval_58279 chr15 31588650 31590232 + 0 NA intron (ENSMUSG00000022235.15, intron 5 of 5) protein_coding-intron (ENSMUSG00000022235.15, intron 5 of 5) 12098 ENSMUSG00000022234.15 ENSMUSG00000022234 ENSMUST00000159121 Cct5 protein_coding Interval_22090 chr11 6291311 6292673 + 0 NA promoter-TSS (ENSMUSG00000020456.17) protein_coding-promoter-TSS (ENSMUSG00000020456.17) 7 ENSMUSG00000020456.17 ENSMUSG00000020456 ENSMUST00000081894 Ogdh protein_coding Interval_145517 chr7 35328362 35328613 + 0 NA Intergenic Intergenic -43168 ENSMUSG00000063808.14 ENSMUSG00000063808 ENSMUST00000153778 Gpatch1 protein_coding Interval_56478 chr14 119025859 119027811 + 0 NA intron (ENSMUSG00000042104.18, intron 26 of 38) protein_coding-intron (ENSMUSG00000042104.18, intron 14 of 17) 9204 ENSMUSG00000042104.18 ENSMUSG00000042104 ENSMUST00000136924 Uggt2 protein_coding Interval_145266 chr7 31049732 31050050 + 0 NA intron (ENSMUSG00000036578.7, intron 1 of 5) protein_coding-intron (ENSMUSG00000036578.7, intron 1 of 5) 1512 ENSMUSG00000036578.7 ENSMUSG00000036578 ENSMUST00000073892 Fxyd7 protein_coding Interval_33105 chr11 114470355 114470904 + 0 NA Intergenic Intergenic -21769 ENSMUSG00000062391.3 ENSMUSG00000062391 ENSMUST00000141088 4932435O22Rik lincRNA Interval_144823 chr7 28464025 28465144 + 0 NA intron (ENSMUSG00000030600.15, intron 1 of 1) protein_coding-intron (ENSMUSG00000109336.1, intron 1 of 12) 12346 ENSMUSG00000030600.15 ENSMUSG00000030600 ENSMUST00000108288 Lrfn1 protein_coding Interval_34947 chr12 15001411 15001743 + 0 NA intron (ENSMUSG00000113644.1, intron 6 of 7) lincRNA-intron (ENSMUSG00000113644.1, intron 4 of 4) 19067 ENSMUSG00000099215.1 ENSMUSG00000099215 ENSMUST00000183930 Gm27682 miRNA Interval_107888 chr3 116610014 116610537 + 0 NA exon (ENSMUSG00000027959.14, exon 8 of 18) protein_coding-exon (ENSMUSG00000027959.14, exon 8 of 18) -15648 ENSMUSG00000027959.14 ENSMUSG00000027959 ENSMUST00000198747 Sass6 protein_coding Interval_24707 chr11 36009318 36009532 + 0 NA intron (ENSMUSG00000049336.16, intron 28 of 28) protein_coding-intron (ENSMUSG00000049336.16, intron 28 of 28) 13371 ENSMUSG00000081571.1 ENSMUSG00000081571 ENSMUST00000117261 Gm12125 processed_pseudogene Interval_71359 chr17 22648132 22648885 + 0 NA Intergenic Intergenic -39212 ENSMUSG00000117055.1 ENSMUSG00000117055 ENSMUST00000233199 Gm9805 processed_pseudogene Interval_95835 chr2 117063637 117063859 + 0 NA Intergenic Intergenic 8182 ENSMUSG00000074930.5 ENSMUSG00000074930 ENSMUST00000122360 Gm13981 processed_pseudogene Interval_102368 chr3 22293562 22294398 + 0 NA intron (ENSMUSG00000102987.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000102987.1, intron 1 of 2) 3850 ENSMUSG00000102987.1 ENSMUSG00000102987 ENSMUST00000194390 Gm38324 lincRNA Interval_123597 chr5 33692287 33692887 + 0 NA Intergenic Intergenic -9613 ENSMUSG00000106971.1 ENSMUSG00000106971 ENSMUST00000201254 Gm42965 processed_pseudogene Interval_128324 chr5 112557578 112558047 + 0 NA intron (ENSMUSG00000058153.15, intron 1 of 14) protein_coding-intron (ENSMUSG00000058153.15, intron 1 of 16) 19056 ENSMUSG00000058153.15 ENSMUSG00000058153 ENSMUST00000212758 Sez6l protein_coding Interval_10508 chr1 171386159 171387486 + 0 NA exon (ENSMUSG00000006411.12, exon 9 of 9) protein_coding-exon (ENSMUSG00000006411.12, exon 9 of 9) -2177 ENSMUSG00000048865.16 ENSMUSG00000048865 ENSMUST00000194914 Arhgap30 protein_coding Interval_33660 chr11 117783337 117783749 + 0 NA exon (ENSMUSG00000050106.17, exon 3 of 16) protein_coding-exon (ENSMUSG00000050106.17, exon 3 of 16) -1345 ENSMUSG00000025572.17 ENSMUSG00000025572 ENSMUST00000127227 Tmc6 protein_coding Interval_89627 chr2 23554462 23554677 + 0 NA intron (ENSMUSG00000026771.14, intron 1 of 11) protein_coding-intron (ENSMUSG00000026771.14, intron 1 of 10) -39346 ENSMUSG00000026771.14 ENSMUSG00000026771 ENSMUST00000123843 Spopl protein_coding Interval_74766 chr17 56413143 56413977 + 0 NA intron (ENSMUSG00000013236.17, intron 27 of 27) protein_coding-intron (ENSMUSG00000013236.17, intron 32 of 32) 5349 ENSMUSG00000098339.1 ENSMUSG00000098339 ENSMUST00000184960 Mir6977 miRNA Interval_150380 chr7 110037699 110038023 + 0 NA intron (ENSMUSG00000066232.4, intron 5 of 16) protein_coding-intron (ENSMUSG00000066232.4, intron 5 of 24) -8503 ENSMUSG00000064451.1 ENSMUSG00000064451 ENSMUST00000082517 Snora23 snoRNA Interval_97194 chr2 132177381 132177603 + 0 NA intron (ENSMUSG00000086756.1, intron 2 of 2) antisense-intron (ENSMUSG00000086756.1, intron 2 of 2) 32959 ENSMUSG00000086756.1 ENSMUSG00000086756 ENSMUST00000131603 Gm14051 antisense Interval_153533 chr8 3232669 3233045 + 0 NA intron (ENSMUSG00000005534.10, intron 2 of 2) protein_coding-intron (ENSMUSG00000005534.10, intron 2 of 20) -26847 ENSMUSG00000086065.1 ENSMUSG00000086065 ENSMUST00000128662 Gm16180 antisense Interval_5622 chr1 90286312 90286666 + 0 NA Intergenic Intergenic 6031 ENSMUSG00000101028.1 ENSMUSG00000101028 ENSMUST00000188640 Gm28723 lincRNA Interval_109730 chr3 146379668 146380787 + 0 NA Intergenic Intergenic -1283 ENSMUSG00000105602.1 ENSMUSG00000105602 ENSMUST00000197639 Gm10636 lincRNA Interval_3028 chr1 52325867 52326863 + 0 NA Intergenic Intergenic -37270 ENSMUSG00000099648.1 ENSMUSG00000099648 ENSMUST00000185256 Gm5975 processed_pseudogene Interval_2209 chr1 37058472 37058666 + 0 NA intron (ENSMUSG00000050122.19, intron 5 of 26) protein_coding-intron (ENSMUSG00000050122.19, intron 4 of 24) 29236 ENSMUSG00000050122.19 ENSMUSG00000050122 ENSMUST00000194320 Vwa3b protein_coding Interval_157235 chr8 68284759 68285089 + 0 NA intron (ENSMUSG00000053886.4, intron 1 of 7) protein_coding-intron (ENSMUSG00000053886.4, intron 2 of 8) 2617 ENSMUSG00000053886.4 ENSMUSG00000053886 ENSMUST00000212166 Sh2d4a protein_coding Interval_30867 chr11 96977126 96978510 + 0 NA promoter-TSS (ENSMUSG00000018678.13) protein_coding-promoter-TSS (ENSMUSG00000018678.13) -107 ENSMUSG00000018678.13 ENSMUSG00000018678 ENSMUST00000062652 Sp2 protein_coding Interval_87794 chr19 55912930 55913303 + 0 NA TTS (ENSMUSG00000024985.20) protein_coding-TTS (ENSMUSG00000024985.20) 71444 ENSMUSG00000099746.1 ENSMUSG00000099746 ENSMUST00000190974 Ppnr sense_intronic Interval_69850 chr16 97534959 97536566 + 0 NA promoter-TSS (ENSMUSG00000023341.15) polymorphic_pseudogene-promoter-TSS (ENSMUSG00000023341.15) -20989 ENSMUSG00000022938.8 ENSMUSG00000022938 ENSMUST00000232018 Fam3b protein_coding Interval_7097 chr1 125719269 125719511 + 0 NA intron (ENSMUSG00000026343.6, intron 1 of 1) protein_coding-intron (ENSMUSG00000026343.6, intron 1 of 1) -50774 ENSMUSG00000101015.1 ENSMUSG00000101015 ENSMUST00000191239 Gm18444 processed_pseudogene Interval_15001 chr10 41818427 41819145 + 0 NA intron (ENSMUSG00000038332.13, intron 1 of 9) protein_coding-intron (ENSMUSG00000038332.13, intron 1 of 9) -7752 ENSMUSG00000111131.1 ENSMUSG00000111131 ENSMUST00000214902 9930024M15Rik TEC Interval_39459 chr12 87781530 87781811 + 0 NA exon (ENSMUSG00000112949.1, exon 1 of 1) processed_pseudogene-exon (ENSMUSG00000112949.1, exon 1 of 1) 527 ENSMUSG00000112949.1 ENSMUSG00000112949 ENSMUST00000221137 Gm21939 processed_pseudogene Interval_69613 chr16 94608955 94609462 + 0 NA intron (ENSMUSG00000022897.15, intron 1 of 5) protein_coding-intron (ENSMUSG00000022897.15, intron 1 of 11) -11169 ENSMUSG00000081692.1 ENSMUSG00000081692 ENSMUST00000119372 Gm15971 processed_pseudogene Interval_107381 chr3 107093807 107094569 + 0 NA promoter-TSS (ENSMUSG00000098108.7) antisense-promoter-TSS (ENSMUSG00000098108.7) -294 ENSMUSG00000098108.7 ENSMUSG00000098108 ENSMUST00000182414 Gm27008 antisense Interval_77867 chr18 4858932 4859433 + 0 NA Intergenic Intergenic 46696 ENSMUSG00000097043.1 ENSMUSG00000097043 ENSMUST00000180904 Gm10556 lincRNA Interval_34327 chr12 3405502 3406120 + 0 NA TTS (ENSMUSG00000071456.6) antisense-TTS (ENSMUSG00000071456.6) -1745 ENSMUSG00000112308.1 ENSMUSG00000112308 ENSMUST00000217965 Gm48512 antisense Interval_17975 chr10 81167104 81167700 + 0 NA intron (ENSMUSG00000004934.14, intron 1 of 1) protein_coding-intron (ENSMUSG00000004934.14, intron 1 of 10) -9391 ENSMUSG00000004934.14 ENSMUSG00000004934 ENSMUST00000129549 Pias4 protein_coding Interval_19450 chr10 99417683 99418812 + 0 NA intron (ENSMUSG00000044633.4, intron 2 of 2) lincRNA-intron (ENSMUSG00000044633.4, intron 2 of 2) -25797 ENSMUSG00000090665.2 ENSMUSG00000090665 ENSMUST00000167243 Gad1-ps processed_pseudogene Interval_55309 chr14 82160151 82160467 + 0 NA Intergenic Intergenic -17731 ENSMUSG00000115825.1 ENSMUSG00000115825 ENSMUST00000228751 Gm49048 lincRNA Interval_84200 chr19 8715998 8717165 + 0 NA intron (ENSMUSG00000010095.13, intron 1 of 1) protein_coding-intron (ENSMUSG00000010095.13, intron 1 of 9) 6617 ENSMUSG00000010095.13 ENSMUSG00000010095 ENSMUST00000205538 Slc3a2 protein_coding Interval_162115 chr8 125271602 125272047 + 0 NA Intergenic Intergenic -44501 ENSMUSG00000086694.1 ENSMUSG00000086694 ENSMUST00000156666 Gm16237 antisense Interval_147159 chr7 63922278 63923274 + 0 NA intron (ENSMUSG00000052040.10, intron 1 of 1) protein_coding-intron (ENSMUSG00000052040.10, intron 1 of 1) 5919 ENSMUSG00000095061.1 ENSMUSG00000095061 ENSMUST00000177638 E030018B13Rik protein_coding Interval_167247 chr9 66646032 66646847 + 0 NA Intergenic Intergenic -53433 ENSMUSG00000032376.12 ENSMUSG00000032376 ENSMUST00000139952 Usp3 protein_coding Interval_154126 chr8 12915139 12915930 + 0 NA promoter-TSS (ENSMUSG00000031442.21) protein_coding-promoter-TSS (ENSMUSG00000031442.21) 224 ENSMUSG00000086770.1 ENSMUSG00000086770 ENSMUST00000150686 Gm15351 antisense Interval_152407 chr7 132812930 132814274 + 0 NA promoter-TSS (ENSMUSG00000030956.15) protein_coding-promoter-TSS (ENSMUSG00000030956.15) -10852 ENSMUSG00000030956.15 ENSMUSG00000030956 ENSMUST00000148303 Fam53b protein_coding Interval_127730 chr5 107148128 107148619 + 0 NA intron (ENSMUSG00000029287.14, intron 6 of 6) protein_coding-intron (ENSMUSG00000029287.14, intron 6 of 16) 12198 ENSMUSG00000105033.1 ENSMUSG00000105033 ENSMUST00000198390 Gm43423 TEC Interval_160555 chr8 110635197 110635484 + 0 NA intron (ENSMUSG00000010936.11, intron 6 of 18) protein_coding-intron (ENSMUSG00000010936.11, intron 6 of 18) -10240 ENSMUSG00000010936.11 ENSMUSG00000010936 ENSMUST00000213015 Vac14 protein_coding Interval_148818 chr7 88546029 88546585 + 0 NA Intergenic Intergenic -15409 ENSMUSG00000069972.6 ENSMUSG00000069972 ENSMUST00000182017 Rps13-ps2 processed_pseudogene Interval_70666 chr17 12909467 12910912 + 0 NA promoter-TSS (ENSMUSG00000073460.5) protein_coding-promoter-TSS (ENSMUSG00000073460.5) 5880 ENSMUSG00000057388.9 ENSMUSG00000057388 ENSMUST00000162978 Mrpl18 protein_coding Interval_112338 chr4 40676354 40677436 + 0 NA Intergenic Intergenic -1437 ENSMUSG00000081720.1 ENSMUSG00000081720 ENSMUST00000117626 Gm12391 processed_pseudogene Interval_35902 chr12 31759825 31760031 + 0 NA intron (ENSMUSG00000035933.5, intron 6 of 22) protein_coding-intron (ENSMUSG00000035933.5, intron 6 of 22) 11869 ENSMUSG00000112779.1 ENSMUSG00000112779 ENSMUST00000219973 Gm18029 processed_pseudogene Interval_83976 chr19 5892984 5894660 + 0 NA intron (ENSMUSG00000044390.5, intron 1 of 1) protein_coding-intron (ENSMUSG00000044390.5, intron 1 of 1) 327 ENSMUSG00000044390.5 ENSMUSG00000044390 ENSMUST00000236767 Tigd3 protein_coding Interval_52801 chr14 50720939 50721157 + 0 NA Intergenic Intergenic -10005 ENSMUSG00000096731.1 ENSMUSG00000096731 ENSMUST00000083041 Gm24316 snRNA Interval_97153 chr2 131806741 131807870 + 0 NA Intergenic Intergenic 38290 ENSMUSG00000081422.1 ENSMUSG00000081422 ENSMUST00000119484 Gm14282 transcribed_processed_pseudogene Interval_28542 chr11 76614030 76614763 + 0 NA intron (ENSMUSG00000017631.19, intron 1 of 22) protein_coding-intron (ENSMUSG00000017631.19, intron 1 of 22) 9162 ENSMUSG00000017631.19 ENSMUSG00000017631 ENSMUST00000137261 Abr protein_coding Interval_80825 chr18 47647397 47648167 + 0 NA intron (ENSMUSG00000118259.1, intron 1 of 5) lincRNA-intron (ENSMUSG00000118259.1, intron 1 of 5) -81985 ENSMUSG00000117765.1 ENSMUSG00000117765 ENSMUST00000237983 Gm5236 processed_pseudogene Interval_163568 chr9 22253072 22253321 + 0 NA intron (ENSMUSG00000062794.8, intron 3 of 4) protein_coding-intron (ENSMUSG00000062794.8, intron 3 of 4) 6699 ENSMUSG00000062794.8 ENSMUSG00000062794 ENSMUST00000086281 Zfp599 protein_coding Interval_139993 chr6 113281917 113283954 + 0 NA exon (ENSMUSG00000030270.11, exon 1 of 1) protein_coding-exon (ENSMUSG00000030270.11, exon 1 of 1) 599 ENSMUSG00000030270.11 ENSMUSG00000030270 ENSMUST00000136728 Cpne9 protein_coding Interval_78070 chr18 7664614 7665032 + 0 NA Intergenic Intergenic 27903 ENSMUSG00000117542.1 ENSMUSG00000117542 ENSMUST00000234387 Gm18763 processed_pseudogene Interval_107204 chr3 104583319 104583825 + 0 NA Intergenic Intergenic 17667 ENSMUSG00000084653.1 ENSMUSG00000084653 ENSMUST00000122704 Gm26091 snRNA Interval_84309 chr19 9991293 9991889 + 0 NA intron (ENSMUSG00000037418.6, intron 1 of 1) protein_coding-intron (ENSMUSG00000037418.6, intron 6 of 11) 6979 ENSMUSG00000037418.6 ENSMUSG00000037418 ENSMUST00000144273 Best1 protein_coding Interval_39776 chr12 98159875 98160083 + 0 NA Intergenic Intergenic -51412 ENSMUSG00000112812.1 ENSMUSG00000112812 ENSMUST00000220264 Gm47415 lincRNA Interval_8185 chr1 136332142 136332502 + 0 NA exon (ENSMUSG00000041570.14, exon 3 of 3) protein_coding-exon (ENSMUSG00000041570.14, exon 3 of 3) -50572 ENSMUSG00000041570.14 ENSMUSG00000041570 ENSMUST00000194730 Camsap2 protein_coding Interval_137076 chr6 67181527 67184016 + 0 NA intron (ENSMUSG00000107799.1, intron 1 of 2) antisense-intron (ENSMUSG00000107799.1, intron 1 of 2) -22848 ENSMUSG00000047905.10 ENSMUSG00000047905 ENSMUST00000120174 Gm8566 processed_pseudogene Interval_93619 chr2 75029263 75029548 + 0 NA Intergenic Intergenic -93891 ENSMUSG00000084574.1 ENSMUSG00000084574 ENSMUST00000122625 n-R5s198 rRNA Interval_103131 chr3 35762999 35763508 + 0 NA intron (ENSMUSG00000037400.17, intron 1 of 21) protein_coding-intron (ENSMUSG00000037400.17, intron 1 of 29) 27880 ENSMUSG00000064834.1 ENSMUSG00000064834 ENSMUST00000082900 Gm25696 snRNA Interval_171991 chr9 123252761 123253499 + 0 NA Intergenic Intergenic 7634 ENSMUSG00000054871.5 ENSMUSG00000054871 ENSMUST00000068140 Tmem158 protein_coding Interval_78555 chr18 14674513 14675336 + 0 NA intron (ENSMUSG00000037013.17, intron 1 of 7) protein_coding-intron (ENSMUSG00000037013.17, intron 2 of 10) -26994 ENSMUSG00000094306.1 ENSMUSG00000094306 ENSMUST00000084007 Gm24924 snRNA Interval_34244 chr11 121563968 121564483 + 0 NA intron (ENSMUSG00000039230.14, intron 4 of 10) protein_coding-intron (ENSMUSG00000039230.14, intron 17 of 38) -34091 ENSMUSG00000039230.14 ENSMUSG00000039230 ENSMUST00000151666 Tbcd protein_coding Interval_62841 chr15 97360993 97362786 + 0 NA intron (ENSMUSG00000044250.8, intron 1 of 1) protein_coding-intron (ENSMUSG00000044250.8, intron 4 of 5) 687 ENSMUSG00000044250.8 ENSMUSG00000044250 ENSMUST00000226495 Pced1b protein_coding Interval_5616 chr1 90249886 90250745 + 0 NA Intergenic Intergenic 9805 ENSMUSG00000101951.1 ENSMUSG00000101951 ENSMUST00000187649 Gm28721 lincRNA Interval_62777 chr15 96813532 96815162 + 0 NA Intergenic Intergenic -47269 ENSMUSG00000095638.2 ENSMUSG00000095638 ENSMUST00000177677 Gm8888 processed_pseudogene Interval_113176 chr4 48918273 48918593 + 0 NA intron (ENSMUSG00000084787.1, intron 2 of 3) lincRNA-intron (ENSMUSG00000084787.1, intron 2 of 3) 19840 ENSMUSG00000084787.1 ENSMUSG00000084787 ENSMUST00000131099 Gm12436 lincRNA Interval_56062 chr14 105244045 105244250 + 0 NA Intergenic Intergenic -5863 ENSMUSG00000094275.1 ENSMUSG00000094275 ENSMUST00000177655 Gm22290 snRNA Interval_163022 chr9 14603047 14603693 + 0 NA intron (ENSMUSG00000013076.17, intron 2 of 13) protein_coding-intron (ENSMUSG00000013076.17, intron 1 of 12) 16195 ENSMUSG00000111540.1 ENSMUSG00000111540 ENSMUST00000216646 4930584E12Rik TEC Interval_95929 chr2 118499179 118500189 + 0 NA Intergenic Intergenic -15507 ENSMUSG00000084028.1 ENSMUSG00000084028 ENSMUST00000118018 Gm13983 processed_pseudogene Interval_159796 chr8 103751807 103752004 + 0 NA Intergenic Intergenic 148106 ENSMUSG00000110336.1 ENSMUSG00000110336 ENSMUST00000211119 4933400L20Rik lincRNA Interval_115655 chr4 101657441 101658463 + 0 NA exon (ENSMUSG00000035212.14, exon 4 of 4) protein_coding-exon (ENSMUSG00000035212.14, exon 4 of 4) 10159 ENSMUSG00000035212.14 ENSMUSG00000035212 ENSMUST00000106927 Leprot protein_coding Interval_166874 chr9 63562691 63562923 + 0 NA intron (ENSMUSG00000037801.13, intron 4 of 20) protein_coding-intron (ENSMUSG00000037801.13, intron 5 of 21) 39610 ENSMUSG00000037801.13 ENSMUSG00000037801 ENSMUST00000170960 Iqch protein_coding Interval_74538 chr17 53129258 53129548 + 0 NA Intergenic Intergenic -67048 ENSMUSG00000117244.1 ENSMUSG00000117244 ENSMUST00000233156 Gm9210 processed_pseudogene Interval_80783 chr18 47040194 47041430 + 0 NA intron (ENSMUSG00000042705.9, intron 5 of 6) protein_coding-intron (ENSMUSG00000042705.9, intron 5 of 6) -55331 ENSMUSG00000087857.1 ENSMUSG00000087857 ENSMUST00000157232 Gm22791 snoRNA Interval_86564 chr19 41725044 41725635 + 0 NA intron (ENSMUSG00000025020.11, intron 3 of 35) protein_coding-intron (ENSMUSG00000025020.11, intron 3 of 36) 18147 ENSMUSG00000025020.11 ENSMUSG00000025020 ENSMUST00000171586 Slit1 protein_coding Interval_31643 chr11 101946443 101946830 + 0 NA Intergenic Intergenic -5785 ENSMUSG00000071818.9 ENSMUSG00000071818 ENSMUST00000123249 4930417O22Rik antisense Interval_69211 chr16 91378838 91379614 + 0 NA intron (ENSMUSG00000022971.18, intron 1 of 5) protein_coding-intron (ENSMUSG00000022971.18, intron 1 of 8) -8563 ENSMUSG00000022971.18 ENSMUSG00000022971 ENSMUST00000139503 Ifnar2 protein_coding Interval_118651 chr4 132997435 132997850 + 0 NA intron (ENSMUSG00000028874.14, intron 9 of 12) protein_coding-intron (ENSMUSG00000028874.14, intron 9 of 12) -14196 ENSMUSG00000037692.14 ENSMUSG00000037692 ENSMUST00000148518 Ahdc1 protein_coding Interval_135753 chr6 46961010 46961775 + 0 NA intron (ENSMUSG00000039419.17, intron 15 of 23) protein_coding-intron (ENSMUSG00000039419.17, intron 15 of 23) -83764 ENSMUSG00000107952.1 ENSMUSG00000107952 ENSMUST00000203583 Gm6352 processed_pseudogene Interval_73781 chr17 43591770 43593045 + 0 NA promoter-TSS (ENSMUSG00000090307.7) antisense-promoter-TSS (ENSMUSG00000090307.7) 25 ENSMUSG00000090307.7 ENSMUSG00000090307 ENSMUST00000164150 1700071M16Rik antisense Interval_62304 chr15 89583524 89583727 + 0 NA TTS (ENSMUSG00000022621.16) protein_coding-TTS (ENSMUSG00000022621.16) 917 ENSMUSG00000022621.16 ENSMUSG00000022621 ENSMUST00000171142 Rabl2 protein_coding Interval_113265 chr4 52659937 52661218 + 0 NA Intergenic Intergenic 53371 ENSMUSG00000028314.6 ENSMUSG00000028314 ENSMUST00000107671 Toporsl protein_coding Interval_67866 chr16 58399642 58399863 + 0 NA Intergenic Intergenic 8524 ENSMUSG00000086827.1 ENSMUSG00000086827 ENSMUST00000133622 4930461C15Rik lincRNA Interval_110307 chr3 156443787 156444808 + 0 NA Intergenic Intergenic 117390 ENSMUSG00000085084.7 ENSMUSG00000085084 ENSMUST00000140941 4930570G19Rik lincRNA Interval_87834 chr19 56352248 56352547 + 0 NA intron (ENSMUSG00000049134.15, intron 22 of 36) protein_coding-intron (ENSMUSG00000049134.15, intron 22 of 40) -11865 ENSMUSG00000090990.1 ENSMUSG00000090990 ENSMUST00000163160 Gm17197 antisense Interval_133933 chr6 15782062 15782529 + 0 NA intron (ENSMUSG00000041390.18, intron 4 of 4) protein_coding-intron (ENSMUSG00000041390.18, intron 4 of 4) -29028 ENSMUSG00000108046.1 ENSMUSG00000108046 ENSMUST00000204851 Gm43924 TEC Interval_105564 chr3 87783035 87784050 + 0 NA intron (ENSMUSG00000028072.6, intron 8 of 16) protein_coding-intron (ENSMUSG00000028072.6, intron 8 of 16) 11620 ENSMUSG00000028072.6 ENSMUSG00000028072 ENSMUST00000029712 Ntrk1 protein_coding Interval_26045 chr11 53736992 53737852 + 0 NA Intergenic Intergenic 3843 ENSMUSG00000083986.1 ENSMUSG00000083986 ENSMUST00000119924 Gm12213 processed_pseudogene Interval_40589 chr12 105869139 105870578 + 0 NA intron (ENSMUSG00000113537.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000113537.1, intron 1 of 2) -4065 ENSMUSG00000093331.1 ENSMUSG00000093331 ENSMUST00000175590 Gm22120 miRNA Interval_97563 chr2 139905961 139906673 + 0 NA intron (ENSMUSG00000039033.11, intron 10 of 12) protein_coding-intron (ENSMUSG00000039033.11, intron 11 of 13) 43020 ENSMUSG00000084207.1 ENSMUSG00000084207 ENSMUST00000120773 Gm14070 processed_pseudogene Interval_143480 chr7 7195931 7196284 + 0 NA Intergenic Intergenic 13891 ENSMUSG00000066838.7 ENSMUSG00000066838 ENSMUST00000074455 Zfp772 protein_coding Interval_118538 chr4 132354657 132354891 + 0 NA Intergenic Intergenic -1111 ENSMUSG00000085241.7 ENSMUSG00000085241 ENSMUST00000136127 Snhg3 processed_transcript Interval_39662 chr12 91872887 91873212 + 0 NA TTS (ENSMUSG00000113676.1) processed_pseudogene-TTS (ENSMUSG00000113676.1) 594 ENSMUSG00000113676.1 ENSMUSG00000113676 ENSMUST00000222677 Gm18621 processed_pseudogene Interval_53612 chr14 60086420 60087811 + 0 NA promoter-TSS (ENSMUSG00000021983.16) protein_coding-promoter-TSS (ENSMUSG00000021983.16) -402 ENSMUSG00000086112.1 ENSMUSG00000086112 ENSMUST00000154835 4930563I02Rik antisense Interval_22074 chr11 6164493 6164778 + 0 NA intron (ENSMUSG00000053838.14, intron 1 of 2) protein_coding-intron (ENSMUSG00000053838.14, intron 2 of 5) 8401 ENSMUSG00000083022.1 ENSMUSG00000083022 ENSMUST00000117476 Rps15a-ps6 processed_pseudogene Interval_121300 chr4 154827751 154828091 + 0 NA Intergenic Intergenic -9538 ENSMUSG00000046637.3 ENSMUSG00000046637 ENSMUST00000137684 Ttc34 protein_coding Interval_79645 chr18 34226450 34226771 + 0 NA intron (ENSMUSG00000005871.15, intron 1 of 13) protein_coding-intron (ENSMUSG00000005871.15, intron 1 of 15) 5686 ENSMUSG00000005871.15 ENSMUSG00000005871 ENSMUST00000167136 Apc protein_coding Interval_159815 chr8 104027393 104029048 + 0 NA Intergenic Intergenic -42929 ENSMUSG00000110019.1 ENSMUSG00000110019 ENSMUST00000211125 Gm8748 processed_pseudogene Interval_82436 chr18 73988940 73989427 + 0 NA intron (ENSMUSG00000024558.12, intron 1 of 1) protein_coding-intron (ENSMUSG00000024558.12, intron 1 of 5) -28724 ENSMUSG00000090263.1 ENSMUSG00000090263 ENSMUST00000159260 D730045A05Rik lincRNA Interval_52106 chr14 36468501 36468868 + 0 NA Intergenic Intergenic -143433 ENSMUSG00000088766.1 ENSMUSG00000088766 ENSMUST00000158141 Gm24394 snoRNA Interval_117966 chr4 127368238 127369032 + 0 NA Intergenic Intergenic -10454 ENSMUSG00000042357.2 ENSMUSG00000042357 ENSMUST00000046498 Gjb5 protein_coding Interval_129582 chr5 121125189 121126293 + 0 NA Intergenic Intergenic 17894 ENSMUSG00000043733.14 ENSMUSG00000043733 ENSMUST00000148871 Ptpn11 protein_coding Interval_161337 chr8 119829249 119830917 + 0 NA intron (ENSMUSG00000031827.13, intron 2 of 3) protein_coding-intron (ENSMUSG00000031827.13, intron 2 of 3) -7366 ENSMUSG00000031827.13 ENSMUSG00000031827 ENSMUST00000212676 Cotl1 protein_coding Interval_57164 chr15 7098240 7098999 + 0 NA intron (ENSMUSG00000054263.12, intron 1 of 4) protein_coding-intron (ENSMUSG00000054263.12, intron 1 of 4) 8005 ENSMUSG00000054263.12 ENSMUSG00000054263 ENSMUST00000171588 Lifr protein_coding Interval_131249 chr5 135987271 135987762 + 0 NA TTS (ENSMUSG00000004948.12) protein_coding-TTS (ENSMUSG00000004948.12) -7331 ENSMUSG00000004947.15 ENSMUSG00000004947 ENSMUST00000142041 Dtx2 protein_coding Interval_105844 chr3 89677543 89677925 + 0 NA Intergenic Intergenic 15216 ENSMUSG00000000794.9 ENSMUSG00000000794 ENSMUST00000124584 Kcnn3 protein_coding Interval_51871 chr14 33207150 33207817 + 0 NA TTS (ENSMUSG00000077612.1) snoRNA-TTS (ENSMUSG00000077612.1) 331 ENSMUSG00000077612.1 ENSMUSG00000077612 ENSMUST00000104424 Gm25498 snoRNA Interval_52172 chr14 38053383 38053999 + 0 NA Intergenic Intergenic 5708 ENSMUSG00000114339.1 ENSMUSG00000114339 ENSMUST00000225855 Gm47974 processed_pseudogene Interval_134625 chr6 30026533 30027421 + 0 NA Intergenic Intergenic 38589 ENSMUSG00000095989.1 ENSMUSG00000095989 ENSMUST00000178068 Gm23049 miRNA Interval_32227 chr11 106318745 106319984 + 0 NA exon (ENSMUSG00000001027.7, exon 24 of 24) protein_coding-exon (ENSMUSG00000001027.7, exon 24 of 24) -4835 ENSMUSG00000040592.11 ENSMUSG00000040592 ENSMUST00000167143 Cd79b protein_coding Interval_64558 chr16 13308686 13309762 + 0 NA intron (ENSMUSG00000009569.14, intron 2 of 4) protein_coding-intron (ENSMUSG00000009569.14, intron 2 of 16) -49197 ENSMUSG00000009569.14 ENSMUSG00000009569 ENSMUST00000149359 Mrtfb protein_coding Interval_117451 chr4 123758451 123758712 + 0 NA Intergenic Intergenic -8350 ENSMUSG00000023075.9 ENSMUSG00000023075 ENSMUST00000153472 Akirin1 protein_coding Interval_136234 chr6 52208540 52208780 + 0 NA promoter-TSS (ENSMUSG00000043219.9) protein_coding-promoter-TSS (ENSMUSG00000043219.9) 62 ENSMUSG00000043219.9 ENSMUSG00000043219 ENSMUST00000062829 Hoxa6 protein_coding Interval_171418 chr9 118045180 118045656 + 0 NA intron (ENSMUSG00000039285.12, intron 1 of 6) protein_coding-intron (ENSMUSG00000039285.12, intron 1 of 7) 4802 ENSMUSG00000039285.12 ENSMUSG00000039285 ENSMUST00000123690 Azi2 protein_coding Interval_72656 chr17 31344103 31344844 + 0 NA intron (ENSMUSG00000024036.16, intron 16 of 18) protein_coding-intron (ENSMUSG00000024036.16, intron 17 of 19) 10856 ENSMUSG00000024036.16 ENSMUSG00000024036 ENSMUST00000235220 Slc37a1 protein_coding Interval_28785 chr11 78307908 78308828 + 0 NA intron (ENSMUSG00000002055.9, intron 3 of 11) protein_coding-intron (ENSMUSG00000002055.9, intron 4 of 23) -6989 ENSMUSG00000002055.9 ENSMUSG00000002055 ENSMUST00000125477 Spag5 protein_coding Interval_170809 chr9 110907616 110908123 + 0 NA Intergenic Intergenic 8992 ENSMUSG00000096393.1 ENSMUSG00000096393 ENSMUST00000177678 Fam240a protein_coding Interval_24437 chr11 33245203 33245582 + 0 NA intron (ENSMUSG00000040594.19, intron 24 of 27) protein_coding-intron (ENSMUSG00000040594.19, intron 24 of 27) 31345 ENSMUSG00000098456.1 ENSMUSG00000098456 ENSMUST00000183831 Gm12117 protein_coding Interval_119718 chr4 139451336 139452169 + 0 NA exon (ENSMUSG00000066036.14, exon 68 of 106) protein_coding-exon (ENSMUSG00000066036.14, exon 68 of 106) 71093 ENSMUSG00000066036.14 ENSMUSG00000066036 ENSMUST00000135534 Ubr4 protein_coding Interval_65884 chr16 30047258 30048043 + 0 NA Intergenic Intergenic -8171 ENSMUSG00000116660.1 ENSMUSG00000116660 ENSMUST00000232465 9030404E10Rik lincRNA Interval_22143 chr11 6592896 6593311 + 0 NA promoter-TSS (ENSMUSG00000000378.15) protein_coding-promoter-TSS (ENSMUSG00000000378.15) 55 ENSMUSG00000000378.15 ENSMUSG00000000378 ENSMUST00000161667 Ccm2 protein_coding Interval_92893 chr2 68243966 68245748 + 0 NA intron (ENSMUSG00000027030.15, intron 1 of 2) protein_coding-intron (ENSMUSG00000027030.15, intron 16 of 17) 141824 ENSMUSG00000027030.15 ENSMUSG00000027030 ENSMUST00000149581 Stk39 protein_coding Interval_104312 chr3 63246753 63247099 + 0 NA intron (ENSMUSG00000027820.12, intron 1 of 5) protein_coding-intron (ENSMUSG00000027820.12, intron 1 of 5) -48340 ENSMUSG00000027820.12 ENSMUSG00000027820 ENSMUST00000193805 Mme protein_coding Interval_65319 chr16 21488521 21488784 + 0 NA intron (ENSMUSG00000033653.18, intron 6 of 31) protein_coding-intron (ENSMUSG00000033653.18, intron 20 of 43) -44460 ENSMUSG00000033653.18 ENSMUSG00000033653 ENSMUST00000127903 Vps8 protein_coding Interval_158429 chr8 83679306 83680080 + 0 NA intron (ENSMUSG00000057672.16, intron 9 of 21) protein_coding-intron (ENSMUSG00000057672.16, intron 9 of 21) -1858 ENSMUSG00000057672.16 ENSMUSG00000057672 ENSMUST00000135356 Pkn1 protein_coding Interval_58011 chr15 26017365 26018285 + 0 NA Intergenic Intergenic 33459 ENSMUSG00000052253.6 ENSMUSG00000052253 ENSMUST00000227093 Zfp622 protein_coding Interval_32541 chr11 108279841 108280222 + 0 NA intron (ENSMUSG00000050965.14, intron 2 of 2) protein_coding-intron (ENSMUSG00000050965.14, intron 2 of 16) -97846 ENSMUSG00000084916.1 ENSMUSG00000084916 ENSMUST00000137462 Gm11656 sense_intronic Interval_18242 chr10 84154578 84155744 + 0 NA Intergenic Intergenic -54464 ENSMUSG00000111049.1 ENSMUSG00000111049 ENSMUST00000216477 Gm34184 lincRNA Interval_146820 chr7 52261600 52262613 + 0 NA Intergenic Intergenic 42146 ENSMUSG00000109026.1 ENSMUSG00000109026 ENSMUST00000209088 Gm44683 processed_pseudogene Interval_134136 chr6 21709250 21709538 + 0 NA intron (ENSMUSG00000060882.5, intron 1 of 5) protein_coding-intron (ENSMUSG00000060882.5, intron 1 of 5) 28093 ENSMUSG00000106855.1 ENSMUSG00000106855 ENSMUST00000201318 5330437M03Rik TEC Interval_80358 chr18 39976708 39977169 + 0 NA Intergenic Intergenic -47564 ENSMUSG00000118015.1 ENSMUSG00000118015 ENSMUST00000237624 Gm41708 lincRNA Interval_153248 chr7 142894452 142895169 + 0 NA intron (ENSMUSG00000000214.11, intron 5 of 6) protein_coding-intron (ENSMUSG00000000214.11, intron 9 of 12) 36310 ENSMUSG00000000214.11 ENSMUSG00000000214 ENSMUST00000140344 Th protein_coding Interval_24146 chr11 30723221 30723876 + 0 NA Intergenic Intergenic -17647 ENSMUSG00000083655.1 ENSMUSG00000083655 ENSMUST00000118660 Gm12099 processed_pseudogene Interval_71447 chr17 23794818 23795906 + 0 NA intron (ENSMUSG00000039218.17, intron 2 of 4) protein_coding-intron (ENSMUSG00000039218.17, intron 2 of 4) -7872 ENSMUSG00000039218.17 ENSMUSG00000039218 ENSMUST00000190568 Srrm2 protein_coding Interval_158480 chr8 83954854 83956075 + 0 NA promoter-TSS (ENSMUSG00000005470.8) protein_coding-promoter-TSS (ENSMUSG00000005470.8) -250 ENSMUSG00000005470.8 ENSMUSG00000005470 ENSMUST00000124174 Asf1b protein_coding Interval_68233 chr16 70049654 70049861 + 0 NA Intergenic Intergenic 64960 ENSMUSG00000116588.1 ENSMUSG00000116588 ENSMUST00000231343 Gm49655 lincRNA Interval_120887 chr4 151330955 151331171 + 0 NA intron (ENSMUSG00000014592.21, intron 5 of 24) protein_coding-intron (ENSMUSG00000014592.21, intron 5 of 23) -45407 ENSMUSG00000085593.1 ENSMUSG00000085593 ENSMUST00000129097 4930589P08Rik antisense Interval_44827 chr13 48950696 48951874 + 0 NA intron (ENSMUSG00000038014.7, intron 1 of 17) protein_coding-intron (ENSMUSG00000038014.7, intron 1 of 17) 16732 ENSMUSG00000038014.7 ENSMUSG00000038014 ENSMUST00000060805 Fam120a protein_coding Interval_172176 chrX 8206097 8208536 + 0 NA promoter-TSS (ENSMUSG00000031169.13) protein_coding-promoter-TSS (ENSMUSG00000031169.13) -825 ENSMUSG00000031169.13 ENSMUSG00000031169 ENSMUST00000139744 Porcn protein_coding Interval_38017 chr12 73982735 73982930 + 0 NA TTS (ENSMUSG00000021113.5) protein_coding-TTS (ENSMUSG00000021113.5) 18351 ENSMUSG00000021113.5 ENSMUSG00000021113 ENSMUST00000220909 Snapc1 protein_coding Interval_125208 chr5 65358487 65359513 + 0 NA intron (ENSMUSG00000029195.10, intron 1 of 3) protein_coding-intron (ENSMUSG00000029195.10, intron 1 of 4) 10592 ENSMUSG00000029195.10 ENSMUSG00000029195 ENSMUST00000205084 Klb protein_coding Interval_6581 chr1 117558165 117558354 + 0 NA Intergenic Intergenic -2971 ENSMUSG00000098815.1 ENSMUSG00000098815 ENSMUST00000184268 Gm27785 miRNA Interval_15024 chr10 42005504 42005778 + 0 NA intron (ENSMUSG00000071324.11, intron 2 of 2) protein_coding-intron (ENSMUSG00000071324.11, intron 3 of 17) -12575 ENSMUSG00000111103.1 ENSMUSG00000111103 ENSMUST00000214172 1700016J18Rik bidirectional_promoter_lncRNA Interval_168797 chr9 87168691 87169147 + 0 NA intron (ENSMUSG00000042761.14, intron 2 of 4) protein_coding-intron (ENSMUSG00000042761.14, intron 1 of 3) 20494 ENSMUSG00000102830.1 ENSMUSG00000102830 ENSMUST00000194991 Gm37012 TEC Interval_5067 chr1 84773299 84774430 + 0 NA intron (ENSMUSG00000026219.14, intron 4 of 6) protein_coding-intron (ENSMUSG00000026219.14, intron 7 of 40) 35326 ENSMUSG00000103505.1 ENSMUSG00000103505 ENSMUST00000194417 Gm38374 TEC Interval_79822 chr18 35351656 35352670 + 0 NA intron (ENSMUSG00000024357.10, intron 2 of 2) protein_coding-intron (ENSMUSG00000024357.10, intron 3 of 9) 88134 ENSMUSG00000117876.1 ENSMUSG00000117876 ENSMUST00000236119 Gm50146 antisense Interval_139720 chr6 108087396 108088229 + 0 NA Intergenic Intergenic 22750 ENSMUSG00000034639.7 ENSMUSG00000034639 ENSMUST00000138140 Setmar protein_coding Interval_127703 chr5 106816090 106816564 + 0 NA Intergenic Intergenic 63371 ENSMUSG00000098703.1 ENSMUSG00000098703 ENSMUST00000183903 Gm27527 miRNA Interval_135108 chr6 35420732 35421116 + 0 NA Intergenic Intergenic 90078 ENSMUSG00000107341.1 ENSMUSG00000107341 ENSMUST00000201560 1700065J11Rik lincRNA Interval_94784 chr2 94289286 94289498 + 0 NA Intergenic Intergenic -24784 ENSMUSG00000075020.6 ENSMUSG00000075020 ENSMUST00000134563 Mir670hg lincRNA Interval_9265 chr1 155667019 155667300 + 0 NA intron (ENSMUSG00000033701.13, intron 6 of 7) protein_coding-intron (ENSMUSG00000033701.13, intron 6 of 7) 84525 ENSMUSG00000026468.14 ENSMUSG00000026468 ENSMUST00000195275 Lhx4 protein_coding Interval_55705 chr14 99158737 99159016 + 0 NA intron (ENSMUSG00000022064.10, intron 10 of 13) protein_coding-intron (ENSMUSG00000022064.10, intron 10 of 17) 47199 ENSMUSG00000115071.1 ENSMUSG00000115071 ENSMUST00000226897 Gm49026 TEC Interval_10720 chr1 173456076 173457005 + 0 NA TTS (ENSMUSG00000037860.15) protein_coding-TTS (ENSMUSG00000037860.15) 1186 ENSMUSG00000037860.15 ENSMUSG00000037860 ENSMUST00000135370 Aim2 protein_coding Interval_137598 chr6 74459778 74460119 + 0 NA Intergenic Intergenic -8044 ENSMUSG00000064408.1 ENSMUSG00000064408 ENSMUST00000082474 Gm23924 snRNA Interval_111405 chr4 20894202 20895806 + 0 NA Intergenic Intergenic 115936 ENSMUSG00000083315.1 ENSMUSG00000083315 ENSMUST00000122429 Gm11871 processed_pseudogene Interval_87732 chr19 55506695 55507133 + 0 NA intron (ENSMUSG00000024983.10, intron 8 of 8) protein_coding-intron (ENSMUSG00000024983.10, intron 7 of 7) 190587 ENSMUSG00000024983.10 ENSMUSG00000024983 ENSMUST00000224396 Vti1a protein_coding Interval_137235 chr6 70569577 70569769 + 0 NA Intergenic Intergenic -2960 ENSMUSG00000076596.3 ENSMUSG00000076596 ENSMUST00000103397 Igkv3-10 IG_V_gene Interval_40981 chr12 110417225 110418901 + 0 NA Intergenic Intergenic -29244 ENSMUSG00000017843.14 ENSMUSG00000017843 ENSMUST00000221074 Ppp2r5c protein_coding Interval_16041 chr10 60257069 60257788 + 0 NA Intergenic Intergenic -20200 ENSMUSG00000004207.14 ENSMUSG00000004207 ENSMUST00000165878 Psap protein_coding Interval_67310 chr16 45843232 45844984 + 0 NA intron (ENSMUSG00000033149.17, intron 1 of 2) protein_coding-intron (ENSMUSG00000033149.17, intron 1 of 17) -71825 ENSMUSG00000033149.17 ENSMUSG00000033149 ENSMUST00000136317 Phldb2 protein_coding Interval_57792 chr15 20015359 20015589 + 0 NA Intergenic Intergenic 3391 ENSMUSG00000115830.1 ENSMUSG00000115830 ENSMUST00000226614 Gm49176 processed_pseudogene Interval_29926 chr11 87796641 87796883 + 0 NA TTS (ENSMUSG00000009350.13) protein_coding-TTS (ENSMUSG00000009350.13) 4382 ENSMUSG00000085872.1 ENSMUSG00000085872 ENSMUST00000130442 Gm11505 antisense Interval_3961 chr1 65102945 65103553 + 0 NA exon (ENSMUSG00000044429.8, exon 1 of 2) protein_coding-exon (ENSMUSG00000044429.8, exon 1 of 2) 111 ENSMUSG00000044429.8 ENSMUSG00000044429 ENSMUST00000061497 Cryga protein_coding Interval_52144 chr14 37105779 37106168 + 0 NA intron (ENSMUSG00000096001.2, intron 2 of 2) protein_coding-intron (ENSMUSG00000096001.2, intron 2 of 2) -7626 ENSMUSG00000021803.10 ENSMUSG00000021803 ENSMUST00000022337 Cdhr1 protein_coding Interval_10580 chr1 172004352 172004542 + 0 NA TTS (ENSMUSG00000026556.15) protein_coding-TTS (ENSMUSG00000026556.15) 22264 ENSMUSG00000026556.15 ENSMUSG00000026556 ENSMUST00000138714 Vangl2 protein_coding Interval_91418 chr2 38658236 38659200 + 0 NA Intergenic Intergenic -13510 ENSMUSG00000083722.2 ENSMUSG00000083722 ENSMUST00000152645 Adgrd2-ps transcribed_unitary_pseudogene Interval_62010 chr15 85865266 85866685 + 0 NA intron (ENSMUSG00000022385.11, intron 4 of 10) protein_coding-intron (ENSMUSG00000022385.11, intron 5 of 11) 6029 ENSMUSG00000022385.11 ENSMUSG00000022385 ENSMUST00000231074 Gtse1 protein_coding Interval_6033 chr1 94265479 94265799 + 0 NA Intergenic Intergenic 61222 ENSMUSG00000100990.1 ENSMUSG00000100990 ENSMUST00000190284 Gm7891 processed_pseudogene Interval_53921 chr14 63410577 63411705 + 0 NA intron (ENSMUSG00000014453.4, intron 1 of 12) protein_coding-intron (ENSMUSG00000014453.4, intron 1 of 12) 18589 ENSMUSG00000097948.1 ENSMUSG00000097948 ENSMUST00000182998 Gm21430 processed_pseudogene Interval_173428 chrX 93294592 93295178 + 0 NA exon (ENSMUSG00000035277.15, exon 4 of 5) protein_coding-exon (ENSMUSG00000035277.15, exon 4 of 5) 8440 ENSMUSG00000035277.15 ENSMUSG00000035277 ENSMUST00000113947 Arx protein_coding Interval_144479 chr7 25367722 25368434 + 0 NA exon (ENSMUSG00000063651.11, exon 3 of 4) protein_coding-exon (ENSMUSG00000063651.11, exon 3 of 4) 1625 ENSMUSG00000063651.11 ENSMUSG00000063651 ENSMUST00000076276 Cnfn protein_coding Interval_109259 chr3 138448349 138448716 + 0 NA TTS (ENSMUSG00000028138.8) protein_coding-TTS (ENSMUSG00000028138.8) 5351 ENSMUSG00000028138.8 ENSMUSG00000028138 ENSMUST00000159392 Adh5 protein_coding Interval_122672 chr5 24586257 24587555 + 0 NA promoter-TSS (ENSMUSG00000038181.16) protein_coding-promoter-TSS (ENSMUSG00000038181.16) 164 ENSMUSG00000038181.16 ENSMUSG00000038181 ENSMUST00000197933 Chpf2 protein_coding Interval_96398 chr2 122192982 122193295 + 0 NA intron (ENSMUSG00000027229.5, intron 2 of 4) protein_coding-intron (ENSMUSG00000027229.5, intron 4 of 6) 6664 ENSMUSG00000027229.5 ENSMUSG00000027229 ENSMUST00000149861 Terb2 protein_coding Interval_163571 chr9 22267041 22267761 + 0 NA Intergenic Intergenic 7299 ENSMUSG00000111205.1 ENSMUSG00000111205 ENSMUST00000216780 Gm39307 bidirectional_promoter_lncRNA Interval_108119 chr3 121620580 121621214 + 0 NA Intergenic Intergenic 22470 ENSMUSG00000044522.8 ENSMUSG00000044522 ENSMUST00000198402 A730020M07Rik lincRNA Interval_88485 chr2 5517742 5518280 + 0 NA intron (ENSMUSG00000039145.16, intron 2 of 2) protein_coding-intron (ENSMUSG00000039145.16, intron 2 of 10) -85560 ENSMUSG00000082013.1 ENSMUSG00000082013 ENSMUST00000117145 Gm13216 processed_pseudogene Interval_144408 chr7 24975254 24975465 + 0 NA Intergenic Intergenic -3132 ENSMUSG00000003380.11 ENSMUSG00000003380 ENSMUST00000205771 Rabac1 protein_coding Interval_119178 chr4 136030989 136032090 + 0 NA intron (ENSMUSG00000059291.15, intron 3 of 4) protein_coding-intron (ENSMUSG00000059291.15, intron 3 of 4) -9776 ENSMUSG00000028668.5 ENSMUSG00000028668 ENSMUST00000030427 Eloa protein_coding Interval_161052 chr8 117182054 117183054 + 0 NA intron (ENSMUSG00000052557.11, intron 1 of 10) protein_coding-intron (ENSMUSG00000052557.11, intron 1 of 10) 24417 ENSMUSG00000052557.11 ENSMUSG00000052557 ENSMUST00000162997 Gan protein_coding Interval_145094 chr7 29992297 29992723 + 0 NA intron (ENSMUSG00000074221.12, intron 4 of 7) protein_coding-intron (ENSMUSG00000074221.12, intron 2 of 7) 7254 ENSMUSG00000074221.12 ENSMUSG00000074221 ENSMUST00000177931 Zfp568 protein_coding Interval_82474 chr18 74312994 74313287 + 0 NA intron (ENSMUSG00000035394.11, intron 7 of 8) protein_coding-intron (ENSMUSG00000035394.11, intron 6 of 7) -9209 ENSMUSG00000095419.1 ENSMUSG00000095419 ENSMUST00000122178 Gm14328 processed_pseudogene Interval_155089 chr8 26347536 26347784 + 0 NA intron (ENSMUSG00000109682.1, intron 2 of 2) lincRNA-intron (ENSMUSG00000109682.1, intron 2 of 2) -35326 ENSMUSG00000110229.1 ENSMUSG00000110229 ENSMUST00000209523 Gm31784 lincRNA Interval_131611 chr5 138782805 138784490 + 0 NA intron (ENSMUSG00000025854.15, intron 4 of 10) protein_coding-intron (ENSMUSG00000025854.15, intron 3 of 9) 28560 ENSMUSG00000025854.15 ENSMUSG00000025854 ENSMUST00000161641 Fam20c protein_coding Interval_174045 chrX 132132046 132132889 + 0 NA Intergenic Intergenic 37640 ENSMUSG00000082205.1 ENSMUSG00000082205 ENSMUST00000119209 Gm7058 processed_pseudogene Interval_16528 chr10 63376955 63378106 + 0 NA intron (ENSMUSG00000020063.16, intron 1 of 13) protein_coding-intron (ENSMUSG00000020063.16, intron 1 of 13) -9041 ENSMUSG00000036764.12 ENSMUSG00000036764 ENSMUST00000136832 Dnajc12 protein_coding Interval_161841 chr8 123135594 123136697 + 0 NA TTS (ENSMUSG00000034796.14) protein_coding-TTS (ENSMUSG00000034796.14) 6039 ENSMUSG00000098582.1 ENSMUSG00000098582 ENSMUST00000184815 Mir7080 miRNA Interval_22484 chr11 10967899 10968409 + 0 NA Intergenic Intergenic -148331 ENSMUSG00000050830.17 ENSMUSG00000050830 ENSMUST00000154155 Vwc2 protein_coding Interval_50337 chr14 11905294 11906607 + 0 NA exon (ENSMUSG00000114267.1, exon 1 of 1) TEC-exon (ENSMUSG00000114267.1, exon 1 of 1) 1271 ENSMUSG00000114267.1 ENSMUSG00000114267 ENSMUST00000225771 Gm48600 TEC Interval_162496 chr9 3348097 3348303 + 0 NA intron (ENSMUSG00000025899.14, intron 7 of 12) protein_coding-intron (ENSMUSG00000025899.14, intron 6 of 11) -4457 ENSMUSG00000064956.1 ENSMUSG00000064956 ENSMUST00000083022 Gm24918 snoRNA Interval_67192 chr16 44264496 44264823 + 0 NA intron (ENSMUSG00000022696.17, intron 14 of 24) protein_coding-intron (ENSMUSG00000022696.17, intron 14 of 25) 17839 ENSMUSG00000022696.17 ENSMUSG00000022696 ENSMUST00000124651 Sidt1 protein_coding Interval_122396 chr5 21961819 21962190 + 0 NA intron (ENSMUSG00000042453.14, intron 40 of 64) protein_coding-intron (ENSMUSG00000042453.14, intron 40 of 63) -4018 ENSMUSG00000105766.1 ENSMUSG00000105766 ENSMUST00000198176 Gm19666 TEC Interval_14028 chr10 25681207 25681682 + 0 NA Intergenic Intergenic 26499 ENSMUSG00000112803.1 ENSMUSG00000112803 ENSMUST00000217933 Gm36543 lincRNA Interval_120006 chr4 141335672 141335962 + 0 NA Intergenic Intergenic -10347 ENSMUSG00000093180.1 ENSMUSG00000093180 ENSMUST00000175439 Gm25690 miRNA Interval_83199 chr18 82721693 82722027 + 0 NA intron (ENSMUSG00000117842.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000117842.1, intron 1 of 2) 1579 ENSMUSG00000092638.1 ENSMUSG00000092638 ENSMUST00000174897 Mir5112 miRNA Interval_168135 chr9 77446635 77446968 + 0 NA intron (ENSMUSG00000032352.16, intron 10 of 13) protein_coding-intron (ENSMUSG00000032352.16, intron 10 of 13) -47383 ENSMUSG00000099170.1 ENSMUSG00000099170 ENSMUST00000183878 5730403I07Rik lincRNA Interval_113735 chr4 57913983 57914513 + 0 NA intron (ENSMUSG00000052117.5, intron 1 of 1) protein_coding-intron (ENSMUSG00000052117.5, intron 1 of 1) 2049 ENSMUSG00000052117.5 ENSMUSG00000052117 ENSMUST00000063816 D630039A03Rik protein_coding Interval_98718 chr2 154476401 154477109 + 0 NA intron (ENSMUSG00000038533.15, intron 1 of 2) protein_coding-intron (ENSMUSG00000038533.15, intron 1 of 10) 39913 ENSMUSG00000038533.15 ENSMUSG00000038533 ENSMUST00000139506 Cbfa2t2 protein_coding Interval_119515 chr4 138040680 138041020 + 0 NA intron (ENSMUSG00000028760.16, intron 2 of 8) protein_coding-intron (ENSMUSG00000028760.16, intron 2 of 9) 47337 ENSMUSG00000028760.16 ENSMUSG00000028760 ENSMUST00000148074 Eif4g3 protein_coding Interval_109102 chr3 135767535 135767806 + 0 NA Intergenic Intergenic -57987 ENSMUSG00000053897.15 ENSMUSG00000053897 ENSMUST00000133810 Slc39a8 protein_coding Interval_42273 chr13 11490743 11490992 + 0 NA Intergenic Intergenic -31185 ENSMUSG00000113593.1 ENSMUSG00000113593 ENSMUST00000220980 Zp4-ps transcribed_unprocessed_pseudogene Interval_149712 chr7 100850012 100850313 + 0 NA TTS (ENSMUSG00000008318.10) protein_coding-TTS (ENSMUSG00000008318.10) 5267 ENSMUSG00000008318.10 ENSMUSG00000008318 ENSMUST00000142885 Relt protein_coding Interval_68212 chr16 68529526 68529992 + 0 NA Intergenic Intergenic 18824 ENSMUSG00000116859.1 ENSMUSG00000116859 ENSMUST00000231403 Gm49651 processed_pseudogene Interval_60919 chr15 77849096 77849896 + 0 NA Intergenic Intergenic -8740 ENSMUSG00000084497.1 ENSMUSG00000084497 ENSMUST00000122548 Gm22107 snRNA Interval_63440 chr15 101105033 101106267 + 0 NA Intergenic Intergenic -10799 ENSMUSG00000047034.10 ENSMUSG00000047034 ENSMUST00000231208 Ankrd33 protein_coding Interval_142362 chr6 140910870 140911081 + 0 NA Intergenic Intergenic -44660 ENSMUSG00000107638.2 ENSMUSG00000107638 ENSMUST00000204355 Gm30524 lincRNA Interval_161278 chr8 119460043 119460329 + 0 NA intron (ENSMUSG00000031837.14, intron 4 of 9) protein_coding-intron (ENSMUSG00000031837.14, intron 5 of 12) 7754 ENSMUSG00000031837.14 ENSMUSG00000031837 ENSMUST00000148328 Necab2 protein_coding Interval_90795 chr2 32646018 32647525 + 0 NA promoter-TSS (ENSMUSG00000026814.16) protein_coding-promoter-TSS (ENSMUSG00000026814.16) -5558 ENSMUSG00000093336.1 ENSMUSG00000093336 ENSMUST00000175595 Mir1954 miRNA Interval_105025 chr3 79856099 79856364 + 0 NA Intergenic Intergenic -13319 ENSMUSG00000027956.11 ENSMUSG00000027956 ENSMUST00000194338 Tmem144 protein_coding Interval_16816 chr10 68353142 68353409 + 0 NA Intergenic Intergenic -32133 ENSMUSG00000112157.1 ENSMUSG00000112157 ENSMUST00000218225 4930545H06Rik lincRNA Interval_47083 chr13 75488237 75488762 + 0 NA Intergenic Intergenic -9112 ENSMUSG00000113821.1 ENSMUSG00000113821 ENSMUST00000221326 Gm48234 processed_pseudogene Interval_88610 chr2 6672048 6672250 + 0 NA intron (ENSMUSG00000002107.18, intron 3 of 11) protein_coding-intron (ENSMUSG00000002107.18, intron 4 of 15) 192459 ENSMUSG00000102599.1 ENSMUSG00000102599 ENSMUST00000194293 Gm38386 TEC Interval_94406 chr2 90808203 90809293 + 0 NA intron (ENSMUSG00000040812.14, intron 13 of 17) protein_coding-intron (ENSMUSG00000040812.14, intron 13 of 17) -4172 ENSMUSG00000080977.1 ENSMUSG00000080977 ENSMUST00000118431 Gm13772 processed_pseudogene Interval_152735 chr7 137042178 137042649 + 0 NA intron (ENSMUSG00000054612.4, intron 2 of 4) protein_coding-intron (ENSMUSG00000054612.4, intron 2 of 4) 121472 ENSMUSG00000109721.1 ENSMUSG00000109721 ENSMUST00000210484 Gm45280 TEC Interval_115908 chr4 106199624 106200496 + 0 NA Intergenic Intergenic -41156 ENSMUSG00000086249.1 ENSMUSG00000086249 ENSMUST00000140196 Gm12724 processed_transcript Interval_131543 chr5 137987493 137988366 + 0 NA intron (ENSMUSG00000037053.6, intron 3 of 3) protein_coding-intron (ENSMUSG00000037053.6, intron 3 of 3) 5495 ENSMUSG00000063739.2 ENSMUSG00000063739 ENSMUST00000072718 Gm4963 processed_pseudogene Interval_60668 chr15 76034143 76035337 + 0 NA promoter-TSS (ENSMUSG00000102018.8) protein_coding-promoter-TSS (ENSMUSG00000102018.8) 41 ENSMUSG00000102018.8 ENSMUSG00000102018 ENSMUST00000187060 Iqank1 protein_coding Interval_657 chr1 9620590 9622114 + 0 NA intron (ENSMUSG00000079671.8, intron 1 of 3) protein_coding-intron (ENSMUSG00000067879.3, intron 4 of 5) 9823 ENSMUSG00000079671.8 ENSMUSG00000079671 ENSMUST00000148310 2610203C22Rik processed_transcript Interval_110245 chr3 154776972 154778430 + 0 NA Intergenic Intergenic -61906 ENSMUSG00000118443.1 ENSMUSG00000118443 ENSMUST00000238360 Gm18589 unitary_pseudogene Interval_145399 chr7 34474822 34475283 + 0 NA intron (ENSMUSG00000085124.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000085124.1, intron 1 of 2) 21013 ENSMUSG00000081863.1 ENSMUSG00000081863 ENSMUST00000122458 Gm12780 processed_pseudogene Interval_59097 chr15 43722368 43723615 + 0 NA Intergenic Intergenic -85470 ENSMUSG00000115407.1 ENSMUSG00000115407 ENSMUST00000226778 Gm2140 processed_pseudogene Interval_49756 chr13 114571093 114572625 + 0 NA Intergenic Intergenic -8636 ENSMUSG00000093072.1 ENSMUSG00000093072 ENSMUST00000175331 Gm25950 miRNA Interval_65412 chr16 22201986 22202641 + 0 NA Intergenic Intergenic -21931 ENSMUSG00000064686.1 ENSMUSG00000064686 ENSMUST00000082752 Gm25810 snRNA Interval_115341 chr4 97465781 97466449 + 0 NA Intergenic Intergenic 56217 ENSMUSG00000084159.1 ENSMUSG00000084159 ENSMUST00000122361 Gm12696 processed_pseudogene Interval_155421 chr8 33475024 33475350 + 0 NA Intergenic Intergenic -9009 ENSMUSG00000109750.1 ENSMUSG00000109750 ENSMUST00000210634 Hmgb1-rs17 unprocessed_pseudogene Interval_60958 chr15 78191011 78191218 + 0 NA TTS (ENSMUSG00000005716.16) protein_coding-TTS (ENSMUSG00000005716.16) 15286 ENSMUSG00000005716.16 ENSMUSG00000005716 ENSMUST00000120592 Pvalb protein_coding Interval_169763 chr9 101041387 101043552 + 0 NA Intergenic Intergenic -7588 ENSMUSG00000032527.13 ENSMUSG00000032527 ENSMUST00000189498 Pccb protein_coding Interval_174861 chrY 1244953 1245882 + 0 NA promoter-TSS (ENSMUSG00000068457.14) protein_coding-promoter-TSS (ENSMUSG00000068457.14) 23468 ENSMUSG00000101059.1 ENSMUSG00000101059 ENSMUST00000084813 Gm4017 processed_pseudogene Interval_50025 chr13 119800834 119801661 + 0 NA Intergenic Intergenic -11986 ENSMUSG00000096182.1 ENSMUSG00000096182 ENSMUST00000179475 Gm23308 snRNA Interval_103083 chr3 35130994 35132507 + 0 NA Intergenic Intergenic 144381 ENSMUSG00000105651.1 ENSMUSG00000105651 ENSMUST00000198307 1700017M07Rik lincRNA Interval_124481 chr5 48709164 48709376 + 0 NA intron (ENSMUSG00000029088.16, intron 1 of 8) protein_coding-intron (ENSMUSG00000029088.16, intron 1 of 8) 6621 ENSMUSG00000105530.1 ENSMUSG00000105530 ENSMUST00000196191 Gm43829 TEC Interval_148287 chr7 80307877 80308481 + 0 NA intron (ENSMUSG00000038943.16, intron 4 of 4) protein_coding-intron (ENSMUSG00000038943.16, intron 8 of 13) 13666 ENSMUSG00000038943.16 ENSMUSG00000038943 ENSMUST00000174599 Prc1 protein_coding Interval_135739 chr6 46187816 46188260 + 0 NA intron (ENSMUSG00000039419.17, intron 1 of 4) protein_coding-intron (ENSMUSG00000039419.17, intron 9 of 23) 53936 ENSMUSG00000107712.1 ENSMUSG00000107712 ENSMUST00000205102 Gm43870 TEC Interval_34815 chr12 12034976 12035237 + 0 NA Intergenic Intergenic 12061 ENSMUSG00000078377.5 ENSMUSG00000078377 ENSMUST00000105169 Gm4294 processed_pseudogene Interval_156902 chr8 61562919 61563280 + 0 NA intron (ENSMUSG00000058056.16, intron 10 of 21) protein_coding-intron (ENSMUSG00000058056.16, intron 10 of 19) -47199 ENSMUSG00000058056.16 ENSMUSG00000058056 ENSMUST00000123523 Palld protein_coding Interval_91984 chr2 52138292 52138498 + 0 NA intron (ENSMUSG00000026950.18, intron 164 of 164) protein_coding-intron (ENSMUSG00000026950.18, intron 73 of 73) 26262 ENSMUSG00000036202.16 ENSMUSG00000036202 ENSMUST00000152178 Rif1 protein_coding Interval_77597 chr17 92705006 92705413 + 0 NA Intergenic Intergenic 13867 ENSMUSG00000117625.1 ENSMUSG00000117625 ENSMUST00000234136 Gm21018 processed_pseudogene Interval_144703 chr7 27627521 27628140 + 0 NA promoter-TSS (ENSMUSG00000004056.15) protein_coding-promoter-TSS (ENSMUSG00000004056.15) -15268 ENSMUSG00000118518.1 ENSMUSG00000118518 ENSMUST00000239103 AC074312.1 unitary_pseudogene Interval_37486 chr12 69308873 69309674 + 0 NA TTS (ENSMUSG00000020978.10) protein_coding-TTS (ENSMUSG00000020978.10) 6872 ENSMUSG00000020978.10 ENSMUSG00000020978 ENSMUST00000154667 Klhdc2 protein_coding Interval_12872 chr10 7145966 7146669 + 0 NA intron (ENSMUSG00000015202.13, intron 4 of 12) protein_coding-intron (ENSMUSG00000015202.13, intron 4 of 12) -10811 ENSMUSG00000015202.13 ENSMUSG00000015202 ENSMUST00000015346 Cnksr3 protein_coding Interval_141301 chr6 127072735 127073736 + 0 NA exon (ENSMUSG00000000182.9, exon 1 of 3) protein_coding-exon (ENSMUSG00000000182.9, exon 1 of 3) 333 ENSMUSG00000000182.9 ENSMUSG00000000182 ENSMUST00000000186 Fgf23 protein_coding Interval_69488 chr16 93831794 93833189 + 0 NA intron (ENSMUSG00000039456.10, intron 1 of 10) protein_coding-intron (ENSMUSG00000039456.10, intron 1 of 16) 528 ENSMUSG00000116927.1 ENSMUSG00000116927 ENSMUST00000231503 Gm30881 antisense Interval_28664 chr11 77640639 77640840 + 0 NA TTS (ENSMUSG00000082646.1) processed_pseudogene-TTS (ENSMUSG00000082646.1) 885 ENSMUSG00000082646.1 ENSMUSG00000082646 ENSMUST00000121688 Gm12732 processed_pseudogene Interval_42422 chr13 13429014 13431226 + 0 NA Intergenic Intergenic -10951 ENSMUSG00000094865.2 ENSMUSG00000094865 ENSMUST00000179046 Gm7426 processed_pseudogene Interval_172037 chr9 123773314 123773527 + 0 NA intron (ENSMUSG00000029530.16, intron 2 of 3) protein_coding-intron (ENSMUSG00000029530.16, intron 1 of 1) 6251 ENSMUSG00000029530.16 ENSMUSG00000029530 ENSMUST00000180093 Ccr9 protein_coding Interval_131124 chr5 135276505 135277254 + 0 NA Intergenic Intergenic 12553 ENSMUSG00000106913.1 ENSMUSG00000106913 ENSMUST00000201947 9430007M09Rik TEC Interval_97112 chr2 131316418 131316798 + 0 NA intron (ENSMUSG00000048911.15, intron 1 of 6) protein_coding-intron (ENSMUSG00000048911.15, intron 1 of 5) 5758 ENSMUSG00000082044.1 ENSMUSG00000082044 ENSMUST00000121967 Snrpert processed_pseudogene Interval_18318 chr10 84858862 84859553 + 0 NA intron (ENSMUSG00000020037.15, intron 6 of 14) protein_coding-intron (ENSMUSG00000020037.15, intron 5 of 9) -48024 ENSMUSG00000089451.1 ENSMUSG00000089451 ENSMUST00000158826 Gm24226 snRNA Interval_18241 chr10 84146187 84146776 + 0 NA Intergenic Intergenic -45784 ENSMUSG00000111049.1 ENSMUSG00000111049 ENSMUST00000216477 Gm34184 lincRNA Interval_161212 chr8 118685696 118686555 + 0 NA intron (ENSMUSG00000031841.19, intron 3 of 7) protein_coding-intron (ENSMUSG00000031841.19, intron 3 of 13) -40775 ENSMUSG00000087707.1 ENSMUSG00000087707 ENSMUST00000157082 Gm22999 snoRNA Interval_17964 chr10 81099990 81100886 + 0 NA Intergenic Intergenic -4178 ENSMUSG00000093498.1 ENSMUSG00000093498 ENSMUST00000176537 Mir5615-2 miRNA Interval_109341 chr3 139177017 139177314 + 0 NA Intergenic Intergenic -28529 ENSMUSG00000047940.13 ENSMUSG00000047940 ENSMUST00000062306 Stpg2 protein_coding Interval_137814 chr6 82722952 82724170 + 0 NA Intergenic Intergenic -18196 ENSMUSG00000030042.15 ENSMUSG00000030042 ENSMUST00000140281 Pole4 protein_coding Interval_106538 chr3 97082971 97083679 + 0 NA intron (ENSMUSG00000104766.1, intron 1 of 3) antisense-intron (ENSMUSG00000104766.1, intron 1 of 3) 9460 ENSMUSG00000104766.1 ENSMUSG00000104766 ENSMUST00000197696 4930573H18Rik antisense Interval_26148 chr11 54758185 54758505 + 0 NA intron (ENSMUSG00000052298.12, intron 1 of 4) protein_coding-intron (ENSMUSG00000052298.12, intron 1 of 5) -11521 ENSMUSG00000082503.1 ENSMUSG00000082503 ENSMUST00000120487 Gm12229 processed_pseudogene Interval_58153 chr15 29823055 29823429 + 0 NA Intergenic Intergenic 65232 ENSMUSG00000088621.1 ENSMUSG00000088621 ENSMUST00000157996 Gm23033 snoRNA Interval_25106 chr11 44014197 44014524 + 0 NA intron (ENSMUSG00000087172.1, intron 3 of 6) lincRNA-intron (ENSMUSG00000087172.1, intron 3 of 6) 55271 ENSMUSG00000087172.1 ENSMUSG00000087172 ENSMUST00000148504 Gm12153 lincRNA Interval_79907 chr18 35841408 35841886 + 0 NA intron (ENSMUSG00000046668.9, intron 1 of 1) protein_coding-intron (ENSMUSG00000046668.9, intron 1 of 2) -10554 ENSMUSG00000100320.1 ENSMUSG00000100320 ENSMUST00000188160 Gm29417 antisense Interval_28358 chr11 75358624 75359641 + 0 NA intron (ENSMUSG00000018809.2, intron 2 of 2) protein_coding-intron (ENSMUSG00000018809.2, intron 2 of 10) 10637 ENSMUSG00000018809.2 ENSMUSG00000018809 ENSMUST00000135774 Smyd4 protein_coding Interval_4646 chr1 75638965 75639717 + 0 NA Intergenic Intergenic 2951 ENSMUSG00000082012.1 ENSMUSG00000082012 ENSMUST00000121823 Gm5257 processed_pseudogene Interval_145632 chr7 36518521 36518714 + 0 NA Intergenic Intergenic -50126 ENSMUSG00000101965.1 ENSMUSG00000101965 ENSMUST00000191121 Gm29129 lincRNA Interval_62830 chr15 97287201 97287841 + 0 NA intron (ENSMUSG00000044250.8, intron 3 of 5) protein_coding-intron (ENSMUSG00000044250.8, intron 3 of 5) 15453 ENSMUSG00000116291.1 ENSMUSG00000116291 ENSMUST00000229443 Gm4383 processed_pseudogene Interval_168618 chr9 84253012 84254280 + 0 NA Intergenic Intergenic 65291 ENSMUSG00000077666.1 ENSMUSG00000077666 ENSMUST00000104478 Gm26146 snRNA Interval_161762 chr8 122610786 122612102 + 0 NA promoter-TSS (ENSMUSG00000015013.9) protein_coding-promoter-TSS (ENSMUSG00000015013.9) -40 ENSMUSG00000015027.11 ENSMUSG00000015027 ENSMUST00000211906 Galns protein_coding Interval_85238 chr19 24111159 24112359 + 0 NA intron (ENSMUSG00000024812.11, intron 14 of 23) protein_coding-intron (ENSMUSG00000024812.11, intron 13 of 22) 35308 ENSMUSG00000024812.11 ENSMUSG00000024812 ENSMUST00000237550 Tjp2 protein_coding Interval_107708 chr3 111502076 111503077 + 0 NA Intergenic Intergenic -179719 ENSMUSG00000106100.1 ENSMUSG00000106100 ENSMUST00000199881 Gm9314 processed_pseudogene Interval_138161 chr6 85653400 85653812 + 0 NA intron (ENSMUSG00000063810.7, intron 13 of 22) protein_coding-intron (ENSMUSG00000063810.7, intron 13 of 22) 20742 ENSMUSG00000107370.1 ENSMUSG00000107370 ENSMUST00000201862 Gm43588 TEC Interval_133900 chr6 14623631 14624240 + 0 NA Intergenic Intergenic -52910 ENSMUSG00000107657.1 ENSMUSG00000107657 ENSMUST00000204864 Gm44446 processed_pseudogene Interval_1941 chr1 34805988 34807086 + 0 NA exon (ENSMUSG00000037509.21, exon 4 of 4) protein_coding-exon (ENSMUSG00000037509.21, exon 4 of 4) 4743 ENSMUSG00000118272.1 ENSMUSG00000118272 ENSMUST00000211073 Arhgef4 protein_coding Interval_53711 chr14 61061628 61062210 + 0 NA intron (ENSMUSG00000115627.1, intron 2 of 3) lincRNA-intron (ENSMUSG00000115627.1, intron 2 of 3) -1508 ENSMUSG00000115627.1 ENSMUSG00000115627 ENSMUST00000227839 Gm41168 lincRNA Interval_112183 chr4 35276201 35276408 + 0 NA Intergenic Intergenic -50129 ENSMUSG00000028300.14 ENSMUSG00000028300 ENSMUST00000149138 C9orf72 protein_coding Interval_41820 chr12 119883388 119883882 + 0 NA Intergenic Intergenic 6982 ENSMUSG00000112946.1 ENSMUSG00000112946 ENSMUST00000223155 Gm9280 unprocessed_pseudogene Interval_88861 chr2 11745515 11745791 + 0 NA intron (ENSMUSG00000058594.15, intron 2 of 2) protein_coding-intron (ENSMUSG00000058594.15, intron 19 of 20) 31897 ENSMUSG00000058594.15 ENSMUSG00000058594 ENSMUST00000151402 Fbh1 protein_coding Interval_124437 chr5 47140209 47140401 + 0 NA Intergenic Intergenic -13346 ENSMUSG00000104660.1 ENSMUSG00000104660 ENSMUST00000196294 Gm43601 TEC Interval_120491 chr4 148940581 148941162 + 0 NA TTS (ENSMUSG00000028977.17) protein_coding-TTS (ENSMUSG00000028977.17) -6131 ENSMUSG00000028977.17 ENSMUSG00000028977 ENSMUST00000239035 Casz1 protein_coding Interval_125924 chr5 75841059 75842166 + 0 NA Intergenic Intergenic -4477 ENSMUSG00000103684.1 ENSMUSG00000103684 ENSMUST00000192381 Gm38180 TEC Interval_20201 chr10 115778763 115779106 + 0 NA Intergenic Intergenic -37898 ENSMUSG00000034127.15 ENSMUSG00000034127 ENSMUST00000035563 Tspan8 protein_coding Interval_112084 chr4 34560936 34561353 + 0 NA intron (ENSMUSG00000028291.7, intron 1 of 1) protein_coding-intron (ENSMUSG00000028291.7, intron 1 of 4) 10193 ENSMUSG00000028291.7 ENSMUSG00000028291 ENSMUST00000132230 Akirin2 protein_coding Interval_173907 chrX 109012476 109014048 + 0 NA exon (ENSMUSG00000031245.8, exon 1 of 6) protein_coding-exon (ENSMUSG00000031245.8, exon 1 of 6) 142 ENSMUSG00000031245.8 ENSMUSG00000031245 ENSMUST00000033597 Hmgn5 protein_coding Interval_7037 chr1 123268536 123268746 + 0 NA Intergenic Intergenic -5498 ENSMUSG00000100525.1 ENSMUSG00000100525 ENSMUST00000186939 Gm20058 processed_pseudogene Interval_11340 chr1 181067354 181068234 + 0 NA intron (ENSMUSG00000102219.1, intron 1 of 2) unprocessed_pseudogene-intron (ENSMUSG00000102219.1, intron 1 of 2) 198 ENSMUSG00000102219.1 ENSMUSG00000102219 ENSMUST00000193613 Gm6606 unprocessed_pseudogene Interval_82233 chr18 69447855 69448140 + 0 NA intron (ENSMUSG00000053477.17, intron 1 of 17) protein_coding-intron (ENSMUSG00000053477.17, intron 4 of 20) -74453 ENSMUSG00000053477.17 ENSMUSG00000053477 ENSMUST00000136019 Tcf4 protein_coding Interval_100961 chr2 173646975 173647184 + 0 NA intron (ENSMUSG00000055897.13, intron 1 of 4) transcribed_unprocessed_pseudogene-intron (ENSMUSG00000055897.13, intron 1 of 1) -12681 ENSMUSG00000027519.10 ENSMUSG00000027519 ENSMUST00000109110 Rab22a protein_coding Interval_98369 chr2 151879516 151880822 + 0 NA Intergenic Intergenic -13209 ENSMUSG00000086620.1 ENSMUSG00000086620 ENSMUST00000152229 Rspo4os antisense Interval_125668 chr5 73156301 73156819 + 0 NA promoter-TSS (ENSMUSG00000086376.2) antisense-promoter-TSS (ENSMUSG00000086376.2) -454 ENSMUSG00000086376.2 ENSMUSG00000086376 ENSMUST00000146728 1700071G01Rik antisense Interval_5209 chr1 86456058 86457443 + 0 NA Intergenic Intergenic -16909 ENSMUSG00000101328.1 ENSMUSG00000101328 ENSMUST00000163337 Rpl30-ps6 processed_pseudogene Interval_93081 chr2 69984129 69984461 + 0 NA intron (ENSMUSG00000044308.17, intron 26 of 38) protein_coding-intron (ENSMUSG00000044308.17, intron 26 of 38) -4491 ENSMUSG00000044308.17 ENSMUSG00000044308 ENSMUST00000123890 Ubr3 protein_coding Interval_80605 chr18 44564941 44566364 + 0 NA intron (ENSMUSG00000071856.10, intron 3 of 18) protein_coding-intron (ENSMUSG00000071856.10, intron 3 of 18) -96451 ENSMUSG00000097610.2 ENSMUSG00000097610 ENSMUST00000202771 A930012L18Rik antisense Interval_138224 chr6 86428762 86429696 + 0 NA intron (ENSMUSG00000107539.1, intron 2 of 4) protein_coding-intron (ENSMUSG00000071337.11, intron 11 of 11) 2571 ENSMUSG00000107539.1 ENSMUSG00000107539 ENSMUST00000204137 Gm44790 protein_coding Interval_125615 chr5 72720727 72721111 + 0 NA intron (ENSMUSG00000054892.14, intron 5 of 13) protein_coding-intron (ENSMUSG00000054892.14, intron 6 of 14) -5143 ENSMUSG00000105089.2 ENSMUSG00000105089 ENSMUST00000198684 Gm43717 processed_pseudogene Interval_15551 chr10 51292058 51292253 + 0 NA Intergenic Intergenic 53326 ENSMUSG00000111880.1 ENSMUSG00000111880 ENSMUST00000218609 Gm5040 processed_pseudogene Interval_97734 chr2 143623132 143623643 + 0 NA intron (ENSMUSG00000027419.9, intron 2 of 11) protein_coding-intron (ENSMUSG00000027419.9, intron 2 of 11) 77116 ENSMUSG00000027419.9 ENSMUSG00000027419 ENSMUST00000124751 Pcsk2 protein_coding Interval_155713 chr8 36369570 36369739 + 0 NA Intergenic Intergenic 3979 ENSMUSG00000098154.2 ENSMUSG00000098154 ENSMUST00000183049 Gm5787 processed_pseudogene Interval_121562 chr5 3465920 3466809 + 0 NA intron (ENSMUSG00000040274.11, intron 4 of 7) protein_coding-intron (ENSMUSG00000040274.11, intron 3 of 6) -4585 ENSMUSG00000040274.11 ENSMUSG00000040274 ENSMUST00000199396 Cdk6 protein_coding Interval_46496 chr13 66608017 66608206 + 0 NA Intergenic Intergenic 14794 ENSMUSG00000114814.1 ENSMUSG00000114814 ENSMUST00000223830 Gm48361 processed_pseudogene Interval_116896 chr4 118061264 118062737 + 0 NA intron (ENSMUSG00000028538.12, intron 2 of 11) protein_coding-intron (ENSMUSG00000028538.12, intron 2 of 11) -30118 ENSMUSG00000028538.12 ENSMUSG00000028538 ENSMUST00000126336 St3gal3 protein_coding Interval_40815 chr12 108589775 108590174 + 0 NA intron (ENSMUSG00000021262.15, intron 1 of 12) protein_coding-intron (ENSMUSG00000021262.15, intron 1 of 13) -34510 ENSMUSG00000097788.2 ENSMUSG00000097788 ENSMUST00000220796 Gm16596 antisense Interval_20479 chr10 117845251 117846527 + 0 NA exon (ENSMUSG00000052681.8, exon 1 of 8) protein_coding-exon (ENSMUSG00000052681.8, exon 1 of 8) -18781 ENSMUSG00000112458.1 ENSMUSG00000112458 ENSMUST00000218113 Gm40773 lincRNA Interval_13616 chr10 20200588 20201792 + 0 NA intron (ENSMUSG00000110754.1, intron 1 of 2) protein_coding-intron (ENSMUSG00000019996.17, intron 1 of 17) 648 ENSMUSG00000110754.1 ENSMUSG00000110754 ENSMUST00000214323 4930405J17Rik antisense Interval_123942 chr5 36772165 36773144 + 0 NA Intergenic Intergenic -5959 ENSMUSG00000115557.1 ENSMUSG00000115557 ENSMUST00000227994 Gm40318 unitary_pseudogene Interval_47351 chr13 81759774 81760666 + 0 NA Intergenic Intergenic 23529 ENSMUSG00000097793.1 ENSMUSG00000097793 ENSMUST00000181520 Gm17259 antisense Interval_71316 chr17 22165376 22166594 + 0 NA exon (ENSMUSG00000063383.5, exon 1 of 5) protein_coding-exon (ENSMUSG00000063383.5, exon 1 of 5) 205 ENSMUSG00000063383.5 ENSMUSG00000063383 ENSMUST00000080249 Zfp947 protein_coding Interval_165166 chr9 44945718 44945944 + 0 NA TTS (ENSMUSG00000059890.16) protein_coding-TTS (ENSMUSG00000059890.16) -9884 ENSMUSG00000111241.1 ENSMUSG00000111241 ENSMUST00000215720 Gm19121 unprocessed_pseudogene Interval_49668 chr13 113875255 113875482 + 0 NA intron (ENSMUSG00000042348.10, intron 1 of 3) protein_coding-intron (ENSMUSG00000042348.10, intron 1 of 4) 80775 ENSMUSG00000042348.10 ENSMUSG00000042348 ENSMUST00000224068 Arl15 protein_coding Interval_117522 chr4 124351325 124355088 + 0 NA Intergenic Intergenic -17525 ENSMUSG00000088933.1 ENSMUSG00000088933 ENSMUST00000158308 Gm22983 snRNA Interval_39597 chr12 91338313 91339479 + 0 NA exon (ENSMUSG00000061533.16, exon 8 of 8) protein_coding-exon (ENSMUSG00000061533.16, exon 8 of 8) 15227 ENSMUSG00000113239.1 ENSMUSG00000113239 ENSMUST00000222339 Gm18388 processed_pseudogene Interval_65341 chr16 21690091 21690528 + 0 NA intron (ENSMUSG00000043391.10, intron 1 of 2) protein_coding-intron (ENSMUSG00000043391.10, intron 1 of 1) 4271 ENSMUSG00000043391.10 ENSMUSG00000043391 ENSMUST00000232634 2510009E07Rik protein_coding Interval_69853 chr16 97570224 97570659 + 0 NA exon (ENSMUSG00000000385.8, exon 9 of 14) protein_coding-exon (ENSMUSG00000000385.8, exon 9 of 14) -3104 ENSMUSG00000000385.8 ENSMUSG00000000385 ENSMUST00000232141 Tmprss2 protein_coding Interval_24072 chr11 29975818 29976153 + 0 NA intron (ENSMUSG00000044072.14, intron 2 of 41) protein_coding-intron (ENSMUSG00000044072.14, intron 2 of 41) -6429 ENSMUSG00000080906.1 ENSMUSG00000080906 ENSMUST00000121962 Gm12095 processed_pseudogene Interval_52622 chr14 48077555 48078610 + 0 NA Intergenic Intergenic 1670 ENSMUSG00000062081.6 ENSMUSG00000062081 ENSMUST00000180532 Gm6055 processed_pseudogene Interval_81527 chr18 61427333 61427612 + 0 NA Intergenic Intergenic 6729 ENSMUSG00000118286.1 ENSMUSG00000118286 ENSMUST00000235755 Gm8755 processed_pseudogene Interval_11768 chr1 185296999 185298652 + 0 NA intron (ENSMUSG00000026618.11, intron 14 of 16) protein_coding-intron (ENSMUSG00000026618.11, intron 14 of 22) -14362 ENSMUSG00000104368.1 ENSMUSG00000104368 ENSMUST00000192375 2010103J01Rik antisense Interval_142219 chr6 139125191 139125988 + 0 NA Intergenic Intergenic -11538 ENSMUSG00000108178.1 ENSMUSG00000108178 ENSMUST00000204132 Gm44267 TEC Interval_68736 chr16 85215551 85216022 + 0 NA Intergenic Intergenic 46937 ENSMUSG00000098604.1 ENSMUSG00000098604 ENSMUST00000184264 Gm27295 snoRNA Interval_68608 chr16 81175453 81175817 + 0 NA Intergenic Intergenic 86380 ENSMUSG00000084671.1 ENSMUSG00000084671 ENSMUST00000122722 Gm26023 misc_RNA Interval_128419 chr5 113230342 113231036 + 0 NA intron (ENSMUSG00000066964.2, intron 1 of 4) protein_coding-intron (ENSMUSG00000066964.2, intron 1 of 4) 3780 ENSMUSG00000066964.2 ENSMUSG00000066964 ENSMUST00000086615 Tmem211 protein_coding Interval_153744 chr8 6062219 6062545 + 0 NA Intergenic Intergenic 27515 ENSMUSG00000109518.1 ENSMUSG00000109518 ENSMUST00000208320 Gm44843 TEC Interval_131316 chr5 136386897 136387235 + 0 NA intron (ENSMUSG00000029705.17, intron 4 of 20) protein_coding-intron (ENSMUSG00000029705.17, intron 4 of 23) -11263 ENSMUSG00000106479.1 ENSMUSG00000106479 ENSMUST00000200230 Mir721 miRNA Interval_159278 chr8 92733277 92734492 + 0 NA Intergenic Intergenic -16909 ENSMUSG00000078967.5 ENSMUSG00000078967 ENSMUST00000181181 Gapdh-ps16 processed_pseudogene Interval_145345 chr7 34139502 34140405 + 0 NA TTS (ENSMUSG00000052997.15) protein_coding-TTS (ENSMUSG00000052997.15) -11916 ENSMUSG00000036459.15 ENSMUSG00000036459 ENSMUST00000140911 Wtip protein_coding Interval_153909 chr8 10960122 10960949 + 0 NA Intergenic Intergenic 10279 ENSMUSG00000109508.1 ENSMUSG00000109508 ENSMUST00000208277 Gm44956 lincRNA Interval_121624 chr5 4022022 4022495 + 0 NA intron (ENSMUSG00000040407.18, intron 21 of 47) protein_coding-intron (ENSMUSG00000040407.18, intron 21 of 47) -1157 ENSMUSG00000040407.18 ENSMUSG00000040407 ENSMUST00000196837 Akap9 protein_coding Interval_148171 chr7 79617154 79617849 + 0 NA exon (ENSMUSG00000030549.6, exon 1 of 11) protein_coding-exon (ENSMUSG00000030549.6, exon 1 of 11) -13825 ENSMUSG00000108318.1 ENSMUSG00000108318 ENSMUST00000206746 Gm45170 TEC Interval_78684 chr18 17276615 17277014 + 0 NA intron (ENSMUSG00000117460.1, intron 2 of 4) transcribed_processed_pseudogene-intron (ENSMUSG00000117460.1, intron 2 of 4) -41361 ENSMUSG00000117460.1 ENSMUSG00000117460 ENSMUST00000234739 4921533I20Rik transcribed_processed_pseudogene Interval_128999 chr5 116552256 116552531 + 0 NA intron (ENSMUSG00000063919.11, intron 1 of 12) protein_coding-intron (ENSMUSG00000063919.11, intron 1 of 12) 21102 ENSMUSG00000106914.1 ENSMUSG00000106914 ENSMUST00000201262 Gm42854 sense_intronic Interval_34156 chr11 120950595 120951321 + 0 NA promoter-TSS (ENSMUSG00000025161.16) protein_coding-promoter-TSS (ENSMUSG00000025161.16) 1877 ENSMUSG00000025161.16 ENSMUSG00000025161 ENSMUST00000134540 Slc16a3 protein_coding Interval_101660 chr3 8666645 8668055 + 0 NA promoter-TSS (ENSMUSG00000040289.8) protein_coding-promoter-TSS (ENSMUSG00000040289.8) -386 ENSMUSG00000040289.8 ENSMUSG00000040289 ENSMUST00000194299 Hey1 protein_coding Interval_49102 chr13 108035897 108036531 + 0 NA intron (ENSMUSG00000068184.7, intron 1 of 3) protein_coding-intron (ENSMUSG00000068184.7, intron 1 of 3) -8272 ENSMUSG00000071180.5 ENSMUSG00000071180 ENSMUST00000224390 Smim15 protein_coding Interval_66876 chr16 38259356 38260776 + 0 NA intron (ENSMUSG00000022809.4, intron 2 of 8) protein_coding-intron (ENSMUSG00000022809.4, intron 2 of 8) 34758 ENSMUSG00000022809.4 ENSMUSG00000022809 ENSMUST00000023504 Nr1i2 protein_coding Interval_62631 chr15 95812002 95813468 + 0 NA TTS (ENSMUSG00000064210.7) protein_coding-TTS (ENSMUSG00000064210.7) -8334 ENSMUSG00000115522.1 ENSMUSG00000115522 ENSMUST00000226780 Gm49173 antisense Interval_9136 chr1 153945245 153945690 + 0 NA Intergenic Intergenic 6241 ENSMUSG00000100014.1 ENSMUSG00000100014 ENSMUST00000185385 Gm29290 lincRNA Interval_48264 chr13 97514644 97514939 + 0 NA intron (ENSMUSG00000114926.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000114926.1, intron 1 of 1) 3587 ENSMUSG00000114926.1 ENSMUSG00000114926 ENSMUST00000225874 Gm2379 lincRNA Interval_90617 chr2 31508899 31509116 + 0 NA intron (ENSMUSG00000076441.9, intron 2 of 3) protein_coding-intron (ENSMUSG00000076441.9, intron 12 of 15) 8281 ENSMUSG00000076441.9 ENSMUSG00000076441 ENSMUST00000130195 Ass1 protein_coding Interval_152460 chr7 133112402 133113647 + 0 NA promoter-TSS (ENSMUSG00000030970.16) protein_coding-promoter-TSS (ENSMUSG00000030970.16) 7247 ENSMUSG00000110282.1 ENSMUSG00000110282 ENSMUST00000209529 B930086L07Rik TEC Interval_54569 chr14 70721732 70722350 + 0 NA intron (ENSMUSG00000022100.14, intron 1 of 21) protein_coding-intron (ENSMUSG00000022100.14, intron 1 of 27) -14006 ENSMUSG00000022100.14 ENSMUSG00000022100 ENSMUST00000227550 Xpo7 protein_coding Interval_57845 chr15 23020402 23021368 + 0 NA intron (ENSMUSG00000040420.15, intron 1 of 6) protein_coding-intron (ENSMUSG00000040420.15, intron 1 of 6) 85398 ENSMUSG00000091194.1 ENSMUSG00000091194 ENSMUST00000169624 Gm19840 processed_pseudogene Interval_169377 chr9 96790580 96791603 + 0 NA Intergenic Intergenic -18665 ENSMUSG00000100383.1 ENSMUSG00000100383 ENSMUST00000187301 Gm28688 processed_pseudogene Interval_156729 chr8 57638272 57639208 + 0 NA TTS (ENSMUSG00000110238.1) TEC-TTS (ENSMUSG00000110238.1) 1393 ENSMUSG00000110238.1 ENSMUSG00000110238 ENSMUST00000211401 Gm19269 TEC Interval_156966 chr8 62950924 62952910 + 0 NA promoter-TSS (ENSMUSG00000054162.15) protein_coding-promoter-TSS (ENSMUSG00000054162.15) -8 ENSMUSG00000054162.15 ENSMUSG00000054162 ENSMUST00000141513 Spock3 protein_coding Interval_15820 chr10 57569941 57570145 + 0 NA Intergenic Intergenic -31350 ENSMUSG00000093406.1 ENSMUSG00000093406 ENSMUST00000177147 Rpl48-ps1 processed_pseudogene Interval_130683 chr5 129735481 129735723 + 0 NA intron (ENSMUSG00000029432.12, intron 1 of 7) protein_coding-intron (ENSMUSG00000029432.12, intron 1 of 9) 7430 ENSMUSG00000086916.2 ENSMUSG00000086916 ENSMUST00000199631 Gm15903 sense_intronic Interval_63222 chr15 99803269 99803595 + 0 NA promoter-TSS (ENSMUSG00000065643.1) snRNA-promoter-TSS (ENSMUSG00000065643.1) -306 ENSMUSG00000065643.1 ENSMUSG00000065643 ENSMUST00000083709 Gm25897 snRNA Interval_171406 chr9 117798476 117798774 + 0 NA intron (ENSMUSG00000039607.17, intron 1 of 3) protein_coding-intron (ENSMUSG00000039607.17, intron 1 of 3) 74056 ENSMUSG00000039607.17 ENSMUSG00000039607 ENSMUST00000210659 Rbms3 protein_coding Interval_15811 chr10 57476913 57477933 + 0 NA TTS (ENSMUSG00000097370.2) lincRNA-TTS (ENSMUSG00000097370.2) 8928 ENSMUSG00000097370.2 ENSMUSG00000097370 ENSMUST00000180831 4930467K11Rik lincRNA Interval_163663 chr9 23576829 23577909 + 0 NA Intergenic Intergenic -199123 ENSMUSG00000111041.1 ENSMUSG00000111041 ENSMUST00000215669 Gm3011 processed_pseudogene Interval_1663 chr1 30872923 30874864 + 0 NA promoter-TSS (ENSMUSG00000048874.15) protein_coding-promoter-TSS (ENSMUSG00000048874.15) -5355 ENSMUSG00000104315.1 ENSMUSG00000104315 ENSMUST00000192050 Gm37906 TEC Interval_78062 chr18 7610261 7610747 + 0 NA intron (ENSMUSG00000057440.8, intron 1 of 2) protein_coding-intron (ENSMUSG00000057440.8, intron 1 of 16) 16350 ENSMUSG00000057440.8 ENSMUSG00000057440 ENSMUST00000233992 Mpp7 protein_coding Interval_160698 chr8 111680359 111681098 + 0 NA Intergenic Intergenic 8946 ENSMUSG00000099129.1 ENSMUSG00000099129 ENSMUST00000183519 Mir7076 miRNA Interval_159784 chr8 103409086 103409746 + 0 NA Intergenic Intergenic -61882 ENSMUSG00000110340.1 ENSMUSG00000110340 ENSMUST00000209501 1600027J07Rik lincRNA Interval_109753 chr3 146608415 146609026 + 0 NA intron (ENSMUSG00000028186.14, intron 1 of 6) protein_coding-intron (ENSMUSG00000028186.14, intron 1 of 7) 6876 ENSMUSG00000028185.12 ENSMUSG00000028185 ENSMUST00000200633 Dnase2b protein_coding Interval_174085 chrX 134540839 134542147 + 0 NA TTS (ENSMUSG00000031264.13) protein_coding-TTS (ENSMUSG00000031264.13) 372 ENSMUSG00000048007.4 ENSMUSG00000048007 ENSMUST00000054213 Timm8a1 protein_coding Interval_71420 chr17 23643487 23646091 + 0 NA exon (ENSMUSG00000023903.8, exon 1 of 10) protein_coding-exon (ENSMUSG00000023903.8, exon 1 of 10) 188 ENSMUSG00000023903.8 ENSMUSG00000023903 ENSMUST00000233764 Mmp25 protein_coding Interval_114183 chr4 66278763 66278933 + 0 NA intron (ENSMUSG00000028373.16, intron 1 of 21) protein_coding-intron (ENSMUSG00000028373.16, intron 1 of 22) -75001 ENSMUSG00000083080.1 ENSMUSG00000083080 ENSMUST00000119808 Gm11484 processed_pseudogene Interval_77589 chr17 92604688 92605019 + 0 NA Intergenic Intergenic -4327 ENSMUSG00000117354.1 ENSMUSG00000117354 ENSMUST00000234942 Gm49995 processed_pseudogene Interval_112673 chr4 43978529 43979073 + 0 NA exon (ENSMUSG00000028480.14, exon 5 of 5) protein_coding-exon (ENSMUSG00000028480.14, exon 5 of 5) -4682 ENSMUSG00000070999.2 ENSMUSG00000070999 ENSMUST00000095107 Ccin protein_coding Interval_89071 chr2 15456667 15456874 + 0 NA Intergenic Intergenic -25142 ENSMUSG00000081389.2 ENSMUSG00000081389 ENSMUST00000122443 Gm13368 processed_pseudogene Interval_31736 chr11 102546059 102546345 + 0 NA TTS (ENSMUSG00000081677.1) processed_pseudogene-TTS (ENSMUSG00000081677.1) 500 ENSMUSG00000081677.1 ENSMUSG00000081677 ENSMUST00000119782 Mdk-ps1 processed_pseudogene Interval_170200 chr9 106156251 106157913 + 0 NA TTS (ENSMUSG00000020258.16) protein_coding-TTS (ENSMUSG00000020258.16) 168 ENSMUSG00000020258.16 ENSMUSG00000020258 ENSMUST00000159809 Glyctk protein_coding Interval_627 chr1 9120947 9121275 + 0 NA intron (ENSMUSG00000025909.16, intron 2 of 20) protein_coding-intron (ENSMUSG00000025909.16, intron 3 of 4) 71005 ENSMUSG00000102316.1 ENSMUSG00000102316 ENSMUST00000193635 Gm37629 TEC Interval_78029 chr18 7058419 7058650 + 0 NA Intergenic Intergenic -14399 ENSMUSG00000117381.1 ENSMUSG00000117381 ENSMUST00000235104 Gm10350 processed_pseudogene Interval_23190 chr11 20449344 20449546 + 0 NA Intergenic Intergenic 3033 ENSMUSG00000083878.3 ENSMUSG00000083878 ENSMUST00000119032 Gm12034 processed_pseudogene Interval_5654 chr1 90590710 90591037 + 0 NA Intergenic Intergenic -12603 ENSMUSG00000034432.11 ENSMUSG00000034432 ENSMUST00000186882 Cops8 protein_coding Interval_67412 chr16 48422181 48422964 + 0 NA Intergenic Intergenic -10156 ENSMUSG00000110573.1 ENSMUSG00000110573 ENSMUST00000212197 Gm5485 protein_coding Interval_136064 chr6 50407592 50407801 + 0 NA intron (ENSMUSG00000029822.15, intron 1 of 5) protein_coding-intron (ENSMUSG00000029822.15, intron 2 of 21) -55739 ENSMUSG00000029822.15 ENSMUSG00000029822 ENSMUST00000154333 Osbpl3 protein_coding Interval_130995 chr5 134462680 134464061 + 0 NA TTS (ENSMUSG00000072576.5) processed_pseudogene-TTS (ENSMUSG00000072576.5) 130 ENSMUSG00000072576.5 ENSMUSG00000072576 ENSMUST00000084281 Gm16020 processed_pseudogene Interval_151670 chr7 125898957 125900323 + 0 NA intron (ENSMUSG00000046182.8, intron 5 of 6) protein_coding-intron (ENSMUSG00000046182.8, intron 5 of 6) 164807 ENSMUSG00000108376.1 ENSMUSG00000108376 ENSMUST00000206586 Gm44874 TEC Interval_82881 chr18 78188731 78189731 + 0 NA intron (ENSMUSG00000024552.16, intron 8 of 21) protein_coding-intron (ENSMUSG00000024552.16, intron 5 of 18) -47112 ENSMUSG00000059336.14 ENSMUSG00000059336 ENSMUST00000160639 Slc14a1 protein_coding Interval_23572 chr11 23451363 23451900 + 0 NA intron (ENSMUSG00000056342.16, intron 58 of 79) protein_coding-intron (ENSMUSG00000056342.16, intron 20 of 23) 28036 ENSMUSG00000065591.1 ENSMUSG00000065591 ENSMUST00000083657 Gm22753 snRNA Interval_77934 chr18 5808969 5809340 + 0 NA Intergenic Intergenic -136029 ENSMUSG00000117508.1 ENSMUSG00000117508 ENSMUST00000234953 Gm34804 lincRNA Interval_56900 chr14 122974952 122975256 + 0 NA intron (ENSMUSG00000041594.18, intron 2 of 2) protein_coding-intron (ENSMUSG00000041594.18, intron 2 of 17) 22985 ENSMUSG00000085423.1 ENSMUSG00000085423 ENSMUST00000136187 4930594M22Rik antisense Interval_49168 chr13 109045789 109046075 + 0 NA intron (ENSMUSG00000021699.17, intron 2 of 15) protein_coding-intron (ENSMUSG00000021699.17, intron 3 of 16) 185766 ENSMUSG00000021699.17 ENSMUSG00000021699 ENSMUST00000155459 Pde4d protein_coding Interval_43943 chr13 38218938 38219285 + 0 NA exon (ENSMUSG00000021431.15, exon 6 of 8) protein_coding-exon (ENSMUSG00000021431.15, exon 6 of 8) 3175 ENSMUSG00000021431.15 ENSMUSG00000021431 ENSMUST00000223893 Snrnp48 protein_coding Interval_3331 chr1 56983832 56984866 + 0 NA intron (ENSMUSG00000087022.4, intron 1 of 4) processed_transcript-intron (ENSMUSG00000087022.4, intron 1 of 4) 7546 ENSMUSG00000104310.1 ENSMUSG00000104310 ENSMUST00000195287 Gm4081 TEC Interval_36576 chr12 50731035 50732031 + 0 NA Intergenic Intergenic -21564 ENSMUSG00000112372.1 ENSMUSG00000112372 ENSMUST00000220240 Gm48779 lincRNA Interval_169857 chr9 102533351 102533570 + 0 NA intron (ENSMUSG00000035606.8, intron 8 of 10) protein_coding-intron (ENSMUSG00000035606.8, intron 8 of 10) 12124 ENSMUSG00000035606.8 ENSMUSG00000035606 ENSMUST00000190609 Ky protein_coding Interval_120181 chr4 143584813 143585577 + 0 NA Intergenic Intergenic 12416 ENSMUSG00000081523.1 ENSMUSG00000081523 ENSMUST00000117097 Gm13058 unprocessed_pseudogene Interval_92872 chr2 67465353 67465573 + 0 NA intron (ENSMUSG00000027022.14, intron 1 of 7) protein_coding-intron (ENSMUSG00000027022.14, intron 1 of 8) 45432 ENSMUSG00000088043.1 ENSMUSG00000088043 ENSMUST00000157418 Gm23328 snoRNA Interval_121185 chr4 153875322 153875681 + 0 NA promoter-TSS (ENSMUSG00000077519.1) snoRNA-promoter-TSS (ENSMUSG00000077519.1) -883 ENSMUSG00000077519.1 ENSMUSG00000077519 ENSMUST00000104331 Gm25880 snoRNA Interval_58666 chr15 36901422 36902390 + 0 NA Intergenic Intergenic -22090 ENSMUSG00000072618.2 ENSMUSG00000072618 ENSMUST00000100713 Gm10384 lincRNA Interval_172144 chrX 7977802 7978610 + 0 NA promoter-TSS (ENSMUSG00000031162.14) protein_coding-promoter-TSS (ENSMUSG00000031162.14) -14040 ENSMUSG00000031162.14 ENSMUSG00000031162 ENSMUST00000128449 Gata1 protein_coding Interval_173022 chrX 64505023 64505402 + 0 NA Intergenic Intergenic 8628 ENSMUSG00000084459.1 ENSMUSG00000084459 ENSMUST00000122510 Gm24598 snoRNA Interval_74656 chr17 54460642 54460849 + 0 NA Intergenic Intergenic 41065 ENSMUSG00000090704.2 ENSMUSG00000090704 ENSMUST00000166597 Trp53-ps processed_pseudogene Interval_16704 chr10 67111204 67111534 + 0 NA intron (ENSMUSG00000037876.17, intron 1 of 9) protein_coding-intron (ENSMUSG00000037876.17, intron 1 of 1) -74047 ENSMUSG00000019873.8 ENSMUSG00000019873 ENSMUST00000219431 Reep3 protein_coding Interval_50290 chr14 11679792 11681300 + 0 NA intron (ENSMUSG00000021745.14, intron 1 of 3) protein_coding-intron (ENSMUSG00000021745.14, intron 1 of 29) -87397 ENSMUSG00000114310.1 ENSMUSG00000114310 ENSMUST00000225152 Gm48602 TEC Interval_110635 chr4 5570136 5570326 + 0 NA Intergenic Intergenic -19008 ENSMUSG00000087099.1 ENSMUSG00000087099 ENSMUST00000131675 Gm11782 lincRNA Interval_112274 chr4 39668944 39670225 + 0 NA Intergenic Intergenic -98034 ENSMUSG00000082302.1 ENSMUSG00000082302 ENSMUST00000117439 Gm12385 processed_pseudogene Interval_54481 chr14 70153110 70154138 + 0 NA TTS (ENSMUSG00000044551.13) protein_coding-TTS (ENSMUSG00000044551.13) 5878 ENSMUSG00000044551.13 ENSMUSG00000044551 ENSMUST00000140152 9930012K11Rik protein_coding Interval_172355 chrX 13386430 13386660 + 0 NA Intergenic Intergenic -7867 ENSMUSG00000080818.4 ENSMUSG00000080818 ENSMUST00000118975 Gm9434 processed_pseudogene Interval_78751 chr18 20286565 20286786 + 0 NA Intergenic Intergenic -24136 ENSMUSG00000069441.3 ENSMUSG00000069441 ENSMUST00000077146 Dsg1a protein_coding Interval_36032 chr12 33449285 33449623 + 0 NA Intergenic Intergenic 3389 ENSMUSG00000077750.1 ENSMUSG00000077750 ENSMUST00000104562 Gm23529 snoRNA Interval_76939 chr17 85071242 85071474 + 0 NA intron (ENSMUSG00000024127.15, intron 3 of 8) protein_coding-intron (ENSMUSG00000024127.15, intron 8 of 13) 6116 ENSMUSG00000024127.15 ENSMUSG00000024127 ENSMUST00000234393 Prepl protein_coding Interval_154003 chr8 11797260 11798843 + 0 NA intron (ENSMUSG00000031511.16, intron 1 of 1) protein_coding-intron (ENSMUSG00000031511.16, intron 6 of 17) 597 ENSMUSG00000031511.16 ENSMUSG00000031511 ENSMUST00000151225 Arhgef7 protein_coding Interval_69505 chr16 93924561 93924938 + 0 NA intron (ENSMUSG00000047109.13, intron 2 of 2) protein_coding-intron (ENSMUSG00000047109.13, intron 2 of 2) 17635 ENSMUSG00000047109.13 ENSMUSG00000047109 ENSMUST00000232406 Cldn14 protein_coding Interval_53502 chr14 57896189 57897307 + 0 NA Intergenic Intergenic -6526 ENSMUSG00000021969.8 ENSMUSG00000021969 ENSMUST00000225955 Zdhhc20 protein_coding Interval_128839 chr5 115534205 115535045 + 0 NA intron (ENSMUSG00000029528.19, intron 1 of 10) protein_coding-intron (ENSMUSG00000029528.19, intron 1 of 10) 19362 ENSMUSG00000086849.1 ENSMUSG00000086849 ENSMUST00000149608 Gm13840 sense_intronic Interval_50978 chr14 21458573 21459661 + 0 NA intron (ENSMUSG00000114875.1, intron 1 of 2) processed_transcript-intron (ENSMUSG00000114875.1, intron 1 of 2) 8643 ENSMUSG00000088873.1 ENSMUSG00000088873 ENSMUST00000158248 Gm25864 snRNA Interval_125036 chr5 64001659 64002486 + 0 NA TTS (ENSMUSG00000077209.1) snoRNA-TTS (ENSMUSG00000077209.1) 412 ENSMUSG00000077209.1 ENSMUSG00000077209 ENSMUST00000104021 Gm25608 snoRNA Interval_109023 chr3 135221992 135222858 + 0 NA intron (ENSMUSG00000045328.11, intron 10 of 45) protein_coding-intron (ENSMUSG00000045328.11, intron 10 of 45) 13438 ENSMUSG00000106079.1 ENSMUSG00000106079 ENSMUST00000199682 Gm43033 processed_pseudogene Interval_141493 chr6 128604379 128605027 + 0 NA Intergenic Intergenic -16678 ENSMUSG00000107503.1 ENSMUSG00000107503 ENSMUST00000203539 Gm44009 lincRNA Interval_17865 chr10 80481153 80481823 + 0 NA Intergenic Intergenic 5136 ENSMUSG00000089228.1 ENSMUSG00000089228 ENSMUST00000158603 Gm25044 snRNA Interval_131613 chr5 138806687 138807043 + 0 NA promoter-TSS (ENSMUSG00000025854.15) protein_coding-promoter-TSS (ENSMUSG00000025854.15) -13215 ENSMUSG00000094504.3 ENSMUSG00000094504 ENSMUST00000179205 Gm5294 protein_coding Interval_7474 chr1 131689203 131689621 + 0 NA intron (ENSMUSG00000052688.12, intron 1 of 5) protein_coding-intron (ENSMUSG00000052688.12, intron 1 of 4) 674 ENSMUSG00000052688.12 ENSMUSG00000052688 ENSMUST00000130848 Rab7b protein_coding Interval_129404 chr5 119761947 119762904 + 0 NA Intergenic Intergenic 45444 ENSMUSG00000107053.1 ENSMUSG00000107053 ENSMUST00000202127 1700021F13Rik lincRNA Interval_136744 chr6 58931209 58931417 + 0 NA TTS (ENSMUSG00000037709.13) protein_coding-TTS (ENSMUSG00000037709.13) -24640 ENSMUSG00000055430.4 ENSMUSG00000055430 ENSMUST00000205101 Nap1l5 protein_coding Interval_15853 chr10 58401275 58401656 + 0 NA intron (ENSMUSG00000019920.18, intron 2 of 9) protein_coding-intron (ENSMUSG00000019920.18, intron 2 of 10) 30011 ENSMUSG00000019920.18 ENSMUSG00000019920 ENSMUST00000148799 Lims1 protein_coding Interval_143096 chr6 149321540 149321966 + 0 NA intron (ENSMUSG00000032712.16, intron 3 of 3) protein_coding-intron (ENSMUSG00000032712.16, intron 2 of 4) 10337 ENSMUSG00000032712.16 ENSMUSG00000032712 ENSMUST00000189837 Resf1 protein_coding Interval_35449 chr12 21892651 21893065 + 0 NA Intergenic Intergenic -116151 ENSMUSG00000091105.1 ENSMUSG00000091105 ENSMUST00000164169 Mrto4-ps2 processed_pseudogene Interval_48082 chr13 95866195 95866694 + 0 NA intron (ENSMUSG00000021676.10, intron 1 of 6) protein_coding-intron (ENSMUSG00000021676.10, intron 1 of 35) 30676 ENSMUSG00000065866.1 ENSMUSG00000065866 ENSMUST00000083932 Gm24032 snRNA Interval_5597 chr1 90084628 90085174 + 0 NA intron (ENSMUSG00000026301.16, intron 2 of 2) protein_coding-intron (ENSMUSG00000026301.16, intron 9 of 18) -29941 ENSMUSG00000026301.16 ENSMUSG00000026301 ENSMUST00000186522 Iqca protein_coding Interval_11912 chr1 187031511 187032287 + 0 NA Intergenic Intergenic -25295 ENSMUSG00000104424.1 ENSMUSG00000104424 ENSMUST00000192135 Gm19058 processed_pseudogene Interval_11830 chr1 186027295 186027527 + 0 NA Intergenic Intergenic 84962 ENSMUSG00000103056.1 ENSMUSG00000103056 ENSMUST00000195813 Gm38268 TEC Interval_67862 chr16 58299590 58299997 + 0 NA Intergenic Intergenic 19278 ENSMUSG00000104456.1 ENSMUSG00000104456 ENSMUST00000193141 Gm37825 TEC Interval_66396 chr16 33600030 33600994 + 0 NA intron (ENSMUSG00000035506.16, intron 1 of 8) protein_coding-intron (ENSMUSG00000035506.16, intron 5 of 12) -15878 ENSMUSG00000035506.16 ENSMUSG00000035506 ENSMUST00000149291 Slc12a8 protein_coding Interval_133674 chr6 8401893 8402206 + 0 NA intron (ENSMUSG00000089862.8, intron 4 of 4) protein_coding-intron (ENSMUSG00000089862.8, intron 2 of 2) -22670 ENSMUSG00000089735.1 ENSMUSG00000089735 ENSMUST00000159919 Gm8428 processed_pseudogene Interval_75272 chr17 65607309 65608190 + 0 NA intron (ENSMUSG00000024091.9, intron 1 of 5) protein_coding-intron (ENSMUSG00000024091.9, intron 1 of 5) -12779 ENSMUSG00000024091.9 ENSMUSG00000024091 ENSMUST00000232686 Vapa protein_coding Interval_145317 chr7 32480072 32480710 + 0 NA Intergenic Intergenic 7139 ENSMUSG00000098185.1 ENSMUSG00000098185 ENSMUST00000182254 Gm9146 processed_pseudogene Interval_4104 chr1 68333351 68334434 + 0 NA intron (ENSMUSG00000062209.15, intron 9 of 18) protein_coding-intron (ENSMUSG00000062209.15, intron 9 of 27) -40166 ENSMUSG00000083795.1 ENSMUSG00000083795 ENSMUST00000117740 Gm15670 processed_pseudogene Interval_39698 chr12 93367254 93368001 + 0 NA Intergenic Intergenic 77196 ENSMUSG00000113164.1 ENSMUSG00000113164 ENSMUST00000223202 4930559C10Rik lincRNA Interval_171415 chr9 117946787 117947073 + 0 NA intron (ENSMUSG00000032443.17, intron 5 of 7) protein_coding-intron (ENSMUSG00000032443.17, intron 5 of 9) -52406 ENSMUSG00000094677.1 ENSMUSG00000094677 ENSMUST00000104810 Gm22008 miRNA Interval_128737 chr5 115004428 115004986 + 0 NA Intergenic Intergenic 29251 ENSMUSG00000106838.1 ENSMUSG00000106838 ENSMUST00000202592 1810017P11Rik TEC Interval_137737 chr6 81945348 81945591 + 0 NA intron (ENSMUSG00000035125.10, intron 11 of 17) protein_coding-intron (ENSMUSG00000035125.10, intron 10 of 16) 14754 ENSMUSG00000035125.10 ENSMUSG00000035125 ENSMUST00000129678 Gcfc2 protein_coding Interval_76488 chr17 80553227 80554132 + 0 NA intron (ENSMUSG00000117375.1, intron 1 of 2) protein_coding-intron (ENSMUSG00000033966.8, intron 3 of 9) 215 ENSMUSG00000117375.1 ENSMUSG00000117375 ENSMUST00000234757 Gm33373 antisense Interval_77353 chr17 88158325 88160970 + 0 NA intron (ENSMUSG00000097676.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000097676.1, intron 1 of 1) 114 ENSMUSG00000097676.1 ENSMUSG00000097676 ENSMUST00000180785 Gm26612 lincRNA Interval_22309 chr11 8658218 8660263 + 0 NA intron (ENSMUSG00000020422.14, intron 1 of 30) protein_coding-intron (ENSMUSG00000020422.14, intron 1 of 30) 5441 ENSMUSG00000020422.14 ENSMUSG00000020422 ENSMUST00000134823 Tns3 protein_coding Interval_133404 chr6 4738465 4740186 + 0 NA exon (ENSMUSG00000004631.15, exon 1 of 1) protein_coding-intron (ENSMUSG00000004631.15, intron 1 of 7) 882 ENSMUSG00000004631.15 ENSMUSG00000004631 ENSMUST00000204897 Sgce protein_coding Interval_12346 chr1 192332128 192332341 + 0 NA intron (ENSMUSG00000058248.12, intron 6 of 10) protein_coding-intron (ENSMUSG00000058248.12, intron 6 of 10) -102506 ENSMUSG00000058248.12 ENSMUSG00000058248 ENSMUST00000151152 Kcnh1 protein_coding Interval_128747 chr5 115053761 115054064 + 0 NA promoter-TSS (ENSMUSG00000086167.3) processed_pseudogene-promoter-TSS (ENSMUSG00000086167.3) -72 ENSMUSG00000086167.3 ENSMUSG00000086167 ENSMUST00000148801 Gm13827 processed_pseudogene Interval_39312 chr12 86640546 86642513 + 0 NA Intergenic Intergenic -9044 ENSMUSG00000113369.1 ENSMUSG00000113369 ENSMUST00000220511 Gm8504 processed_pseudogene Interval_64938 chr16 17373591 17373834 + 0 NA intron (ENSMUSG00000041720.14, intron 6 of 54) protein_coding-intron (ENSMUSG00000041720.14, intron 6 of 54) -31700 ENSMUSG00000065331.1 ENSMUSG00000065331 ENSMUST00000083397 Gm24927 snRNA Interval_60138 chr15 66192358 66192569 + 0 NA intron (ENSMUSG00000056258.9, intron 1 of 14) protein_coding-intron (ENSMUSG00000056258.9, intron 1 of 14) 93588 ENSMUSG00000056258.9 ENSMUSG00000056258 ENSMUST00000183633 Kcnq3 protein_coding Interval_126062 chr5 77170676 77171168 + 0 NA Intergenic Intergenic -30670 ENSMUSG00000106783.1 ENSMUSG00000106783 ENSMUST00000201649 Chaer1 lincRNA Interval_18254 chr10 84324043 84324240 + 0 NA Intergenic Intergenic 15255 ENSMUSG00000111875.1 ENSMUSG00000111875 ENSMUST00000214125 Gm5425 processed_pseudogene Interval_76677 chr17 83402329 83403894 + 0 NA intron (ENSMUSG00000032624.16, intron 1 of 22) protein_coding-intron (ENSMUSG00000032624.16, intron 1 of 20) -53190 ENSMUSG00000032624.16 ENSMUSG00000032624 ENSMUST00000235121 Eml4 protein_coding Interval_167798 chr9 72762665 72763562 + 0 NA Intergenic Intergenic 13112 ENSMUSG00000098294.1 ENSMUSG00000098294 ENSMUST00000184673 Gm27204 lincRNA Interval_147503 chr7 67797014 67798093 + 0 NA intron (ENSMUSG00000097697.2, intron 1 of 3) lincRNA-intron (ENSMUSG00000097697.2, intron 1 of 2) 6586 ENSMUSG00000097697.2 ENSMUSG00000097697 ENSMUST00000208257 4833412C05Rik lincRNA Interval_22213 chr11 7198234 7198571 + 0 NA intron (ENSMUSG00000020429.7, intron 1 of 3) protein_coding-intron (ENSMUSG00000020429.7, intron 1 of 3) 620 ENSMUSG00000020429.7 ENSMUSG00000020429 ENSMUST00000020704 Igfbp1 protein_coding Interval_101275 chr2 180118764 180119998 + 0 NA promoter-TSS (ENSMUSG00000039050.8) protein_coding-promoter-TSS (ENSMUSG00000039050.8) -23 ENSMUSG00000039050.8 ENSMUSG00000039050 ENSMUST00000124225 Osbpl2 protein_coding Interval_156184 chr8 45737389 45737881 + 0 NA exon (ENSMUSG00000031626.18, exon 2 of 2) protein_coding-exon (ENSMUSG00000031626.18, exon 2 of 2) -41593 ENSMUSG00000110411.1 ENSMUSG00000110411 ENSMUST00000209931 Gm45457 TEC Interval_64211 chr16 9221945 9222138 + 0 NA Intergenic Intergenic 63271 ENSMUSG00000116123.1 ENSMUSG00000116123 ENSMUST00000229655 Gm49451 lincRNA Interval_116976 chr4 118589379 118591088 + 0 NA intron (ENSMUSG00000028730.14, intron 10 of 21) protein_coding-intron (ENSMUSG00000028730.14, intron 11 of 22) 30172 ENSMUSG00000028730.14 ENSMUSG00000028730 ENSMUST00000081921 Cfap57 protein_coding Interval_108902 chr3 133147478 133147680 + 0 NA intron (ENSMUSG00000040969.14, intron 6 of 13) protein_coding-intron (ENSMUSG00000040969.14, intron 6 of 13) 47192 ENSMUSG00000028016.9 ENSMUSG00000028016 ENSMUST00000160669 Ints12 protein_coding Interval_17861 chr10 80460292 80460804 + 0 NA Intergenic Intergenic -15804 ENSMUSG00000089228.1 ENSMUSG00000089228 ENSMUST00000158603 Gm25044 snRNA Interval_54561 chr14 70681343 70681513 + 0 NA exon (ENSMUSG00000022100.14, exon 3 of 3) protein_coding-exon (ENSMUSG00000022100.14, exon 3 of 3) 6978 ENSMUSG00000115387.1 ENSMUSG00000115387 ENSMUST00000228317 Gm49244 processed_pseudogene Interval_152567 chr7 134679188 134680247 + 0 NA intron (ENSMUSG00000058325.6, intron 1 of 18) protein_coding-intron (ENSMUSG00000058325.6, intron 1 of 51) 9030 ENSMUSG00000058325.6 ENSMUSG00000058325 ENSMUST00000210121 Dock1 protein_coding Interval_144223 chr7 20562919 20563196 + 0 NA Intergenic Intergenic 13184 ENSMUSG00000095837.1 ENSMUSG00000095837 ENSMUST00000174364 Vmn1r246 protein_coding Interval_132981 chr5 149079051 149080026 + 0 NA intron (ENSMUSG00000066551.12, intron 2 of 5) protein_coding-intron (ENSMUSG00000066551.12, intron 2 of 5) 43874 ENSMUSG00000097191.2 ENSMUSG00000097191 ENSMUST00000200718 Mm2pr lincRNA Interval_61109 chr15 79280313 79282125 + 0 NA intron (ENSMUSG00000018126.15, intron 4 of 6) protein_coding-intron (ENSMUSG00000018126.15, intron 4 of 13) 4274 ENSMUSG00000018126.15 ENSMUSG00000018126 ENSMUST00000170955 Baiap2l2 protein_coding Interval_37450 chr12 69079661 69080368 + 0 NA Intergenic Intergenic 40333 ENSMUSG00000113716.1 ENSMUSG00000113716 ENSMUST00000222118 Gm47518 lincRNA Interval_60882 chr15 77462533 77465086 + 0 NA Intergenic Intergenic -4393 ENSMUSG00000116292.1 ENSMUSG00000116292 ENSMUST00000229607 Gm49551 processed_pseudogene Interval_79243 chr18 27163058 27163315 + 0 NA Intergenic Intergenic -71999 ENSMUSG00000117646.1 ENSMUSG00000117646 ENSMUST00000234185 Gm49977 processed_pseudogene Interval_82180 chr18 68444057 68444293 + 0 NA Intergenic Intergenic 11382 ENSMUSG00000118288.1 ENSMUSG00000118288 ENSMUST00000236693 Gm50258 processed_pseudogene Interval_3004 chr1 52098822 52099615 + 0 NA intron (ENSMUSG00000101628.1, intron 6 of 33) protein_coding-intron (ENSMUSG00000062939.11, intron 16 of 23) -6231 ENSMUSG00000062939.11 ENSMUSG00000062939 ENSMUST00000187554 Stat4 protein_coding Interval_101357 chr2 180745087 180745728 + 0 NA Intergenic Intergenic 8989 ENSMUSG00000023393.15 ENSMUSG00000023393 ENSMUST00000140955 Slc17a9 protein_coding Interval_156345 chr8 47581305 47582023 + 0 NA Intergenic Intergenic -10004 ENSMUSG00000098402.1 ENSMUSG00000098402 ENSMUST00000184727 Gm27409 miRNA Interval_129926 chr5 123106849 123107414 + 0 NA intron (ENSMUSG00000029449.11, intron 5 of 5) protein_coding-intron (ENSMUSG00000054434.14, intron 6 of 11) -3565 ENSMUSG00000104951.1 ENSMUSG00000104951 ENSMUST00000200411 Gm43413 TEC Interval_92008 chr2 52514196 52514682 + 0 NA intron (ENSMUSG00000017412.15, intron 2 of 13) protein_coding-intron (ENSMUSG00000017412.15, intron 2 of 13) -37530 ENSMUSG00000082132.1 ENSMUSG00000082132 ENSMUST00000119519 Gm13541 processed_pseudogene Interval_42614 chr13 16806698 16807798 + 0 NA Intergenic Intergenic 52224 ENSMUSG00000087872.1 ENSMUSG00000087872 ENSMUST00000157247 Gm26098 misc_RNA Interval_148948 chr7 90259372 90259579 + 0 NA exon (ENSMUSG00000030617.13, exon 2 of 8) protein_coding-exon (ENSMUSG00000030617.13, exon 2 of 8) 6302 ENSMUSG00000030617.13 ENSMUSG00000030617 ENSMUST00000207819 Ccdc83 protein_coding Interval_66945 chr16 38679214 38680475 + 0 NA intron (ENSMUSG00000022799.4, intron 1 of 1) protein_coding-intron (ENSMUSG00000022799.4, intron 1 of 11) 6025 ENSMUSG00000081651.1 ENSMUSG00000081651 ENSMUST00000122206 Gm15530 processed_pseudogene Interval_73425 chr17 37145345 37145783 + 0 NA intron (ENSMUSG00000091601.3, intron 2 of 2) protein_coding-intron (ENSMUSG00000091601.3, intron 2 of 2) 14655 ENSMUSG00000092223.1 ENSMUSG00000092223 ENSMUST00000173971 Gm19807 processed_pseudogene Interval_17073 chr10 71159024 71160702 + 0 NA promoter-TSS (ENSMUSG00000014329.14) protein_coding-promoter-TSS (ENSMUSG00000014329.14) -3065 ENSMUSG00000112748.1 ENSMUSG00000112748 ENSMUST00000217890 Gm6331 processed_pseudogene Interval_138164 chr6 85756210 85756410 + 0 NA intron (ENSMUSG00000090256.1, intron 8 of 8) unprocessed_pseudogene-intron (ENSMUSG00000090256.1, intron 8 of 8) 9444 ENSMUSG00000051262.9 ENSMUSG00000051262 ENSMUST00000168531 Nat8f3 protein_coding Interval_36594 chr12 51055857 51056084 + 0 NA intron (ENSMUSG00000111986.1, intron 4 of 4) lincRNA-intron (ENSMUSG00000111986.1, intron 4 of 4) -29717 ENSMUSG00000088966.1 ENSMUSG00000088966 ENSMUST00000158341 Gm22088 snoRNA Interval_29667 chr11 85907890 85908129 + 0 NA intron (ENSMUSG00000000094.12, intron 5 of 8) protein_coding-intron (ENSMUSG00000000094.12, intron 4 of 7) 21587 ENSMUSG00000000094.12 ENSMUSG00000000094 ENSMUST00000108045 Tbx4 protein_coding Interval_84387 chr19 10539731 10539946 + 0 NA TTS (ENSMUSG00000034820.4) protein_coding-TTS (ENSMUSG00000034820.4) 8011 ENSMUSG00000034820.4 ENSMUSG00000034820 ENSMUST00000236154 Cpsf7 protein_coding Interval_158820 chr8 86866433 86867613 + 0 NA intron (ENSMUSG00000031652.11, intron 1 of 6) protein_coding-intron (ENSMUSG00000031652.11, intron 1 of 6) -14603 ENSMUSG00000031652.11 ENSMUSG00000031652 ENSMUST00000210029 N4bp1 protein_coding Interval_72512 chr17 30335516 30336638 + 0 NA intron (ENSMUSG00000062202.14, intron 4 of 7) protein_coding-intron (ENSMUSG00000062202.14, intron 6 of 11) 24998 ENSMUSG00000089222.1 ENSMUSG00000089222 ENSMUST00000158597 Gm25049 snRNA Interval_106722 chr3 100031016 100031526 + 0 NA intron (ENSMUSG00000027867.10, intron 15 of 48) protein_coding-intron (ENSMUSG00000027867.10, intron 1 of 3) 22911 ENSMUSG00000080754.1 ENSMUSG00000080754 ENSMUST00000119462 Rpl36-ps7 processed_pseudogene Interval_34677 chr12 8563141 8563414 + 0 NA TTS (ENSMUSG00000112276.1) antisense-TTS (ENSMUSG00000112276.1) -23732 ENSMUSG00000020600.13 ENSMUSG00000020600 ENSMUST00000129465 Slc7a15 protein_coding Interval_83184 chr18 82610230 82611213 + 0 NA intron (ENSMUSG00000041258.18, intron 1 of 7) protein_coding-intron (ENSMUSG00000041258.18, intron 24 of 29) -40332 ENSMUSG00000118160.1 ENSMUSG00000118160 ENSMUST00000237388 Gm50347 unprocessed_pseudogene Interval_173392 chrX 86860764 86861095 + 0 NA intron (ENSMUSG00000052372.10, intron 6 of 10) protein_coding-intron (ENSMUSG00000052372.10, intron 5 of 9) 68455 ENSMUSG00000083779.1 ENSMUSG00000083779 ENSMUST00000122089 Gm14775 processed_pseudogene Interval_40967 chr12 110319331 110320433 + 0 NA exon (ENSMUSG00000113512.1, exon 1 of 1) processed_pseudogene-exon (ENSMUSG00000113512.1, exon 1 of 1) 291 ENSMUSG00000113512.1 ENSMUSG00000113512 ENSMUST00000223299 Gm9063 processed_pseudogene Interval_132550 chr5 146230879 146231922 + 0 NA promoter-TSS (ENSMUSG00000029635.15) protein_coding-promoter-TSS (ENSMUSG00000029635.15) -10499 ENSMUSG00000029634.15 ENSMUSG00000029634 ENSMUST00000161725 Rnf6 protein_coding Interval_77947 chr18 6005258 6005654 + 0 NA Intergenic Intergenic 9565 ENSMUSG00000117548.1 ENSMUSG00000117548 ENSMUST00000234469 Gm41662 TEC Interval_101899 chr3 10640800 10641208 + 0 NA Intergenic Intergenic -5312 ENSMUSG00000104451.1 ENSMUSG00000104451 ENSMUST00000191685 Gm37831 TEC Interval_3177 chr1 54484597 54485666 + 0 NA intron (ENSMUSG00000073678.4, intron 25 of 26) protein_coding-intron (ENSMUSG00000073678.4, intron 25 of 26) -28368 ENSMUSG00000109809.1 ENSMUSG00000109809 ENSMUST00000210156 Gm34066 protein_coding Interval_64415 chr16 11223548 11223783 + 0 NA TTS (ENSMUSG00000097537.2) antisense-TTS (ENSMUSG00000097537.2) 19970 ENSMUSG00000097537.2 ENSMUSG00000097537 ENSMUST00000230245 2610020C07Rik antisense Interval_79747 chr18 34884255 34884767 + 0 NA Intergenic Intergenic 23304 ENSMUSG00000038418.7 ENSMUSG00000038418 ENSMUST00000165033 Egr1 protein_coding Interval_125853 chr5 75043837 75045230 + 0 NA promoter-TSS (ENSMUSG00000029229.8) protein_coding-promoter-TSS (ENSMUSG00000029229.8) -212 ENSMUSG00000029229.8 ENSMUSG00000029229 ENSMUST00000162397 Chic2 protein_coding Interval_96293 chr2 121345133 121345481 + 0 NA intron (ENSMUSG00000033526.16, intron 10 of 17) protein_coding-intron (ENSMUSG00000033526.16, intron 9 of 29) -8148 ENSMUSG00000033526.16 ENSMUSG00000033526 ENSMUST00000134796 Ppip5k1 protein_coding Interval_75610 chr17 69273796 69274174 + 0 NA promoter-TSS (ENSMUSG00000024044.19) protein_coding-promoter-TSS (ENSMUSG00000024044.19) 3223 ENSMUSG00000100572.1 ENSMUSG00000100572 ENSMUST00000187090 2410021H03Rik antisense Interval_50405 chr14 12550712 12551903 + 0 NA intron (ENSMUSG00000054423.14, intron 6 of 28) protein_coding-intron (ENSMUSG00000054423.14, intron 6 of 28) -67361 ENSMUSG00000114453.1 ENSMUSG00000114453 ENSMUST00000225784 Gm17805 processed_pseudogene Interval_105383 chr3 85841975 85842428 + 0 NA intron (ENSMUSG00000102805.5, intron 1 of 3) protein_coding-intron (ENSMUSG00000102805.5, intron 1 of 3) 45315 ENSMUSG00000031286.6 ENSMUSG00000031286 ENSMUST00000033643 Glt28d2 protein_coding Interval_8692 chr1 148521779 148522596 + 0 NA Intergenic Intergenic 23679 ENSMUSG00000101208.1 ENSMUSG00000101208 ENSMUST00000189771 Gm19891 processed_pseudogene Interval_118692 chr4 133220529 133221346 + 0 NA promoter-TSS (ENSMUSG00000028865.14) protein_coding-promoter-TSS (ENSMUSG00000028865.14) 8031 ENSMUSG00000028865.14 ENSMUSG00000028865 ENSMUST00000134713 Cd164l2 protein_coding Interval_45398 chr13 54873910 54875190 + 0 NA Intergenic Intergenic -12920 ENSMUSG00000100728.1 ENSMUSG00000100728 ENSMUST00000189848 Gm29431 lincRNA Interval_4215 chr1 71652626 71653899 + 0 NA promoter-TSS (ENSMUSG00000026193.15) protein_coding-promoter-TSS (ENSMUSG00000026193.15) -90 ENSMUSG00000026193.15 ENSMUSG00000026193 ENSMUST00000186736 Fn1 protein_coding Interval_21313 chr10 127896576 127897834 + 0 NA Intergenic Intergenic -4841 ENSMUSG00000040127.13 ENSMUSG00000040127 ENSMUST00000149849 Sdr9c7 protein_coding Interval_128032 chr5 110391696 110392040 + 0 NA intron (ENSMUSG00000043323.17, intron 5 of 17) protein_coding-intron (ENSMUSG00000043323.17, intron 5 of 18) 37710 ENSMUSG00000072754.9 ENSMUSG00000072754 ENSMUST00000190963 Lrcol1 protein_coding Interval_34356 chr12 3582510 3584288 + 0 NA intron (ENSMUSG00000071454.13, intron 1 of 18) protein_coding-intron (ENSMUSG00000071454.13, intron 1 of 18) 10929 ENSMUSG00000071454.13 ENSMUSG00000071454 ENSMUST00000174293 Dtnb protein_coding Interval_48652 chr13 100853422 100854807 + 0 NA intron (ENSMUSG00000100596.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000100596.1, intron 1 of 2) 6681 ENSMUSG00000100596.1 ENSMUSG00000100596 ENSMUST00000185979 Gm29502 lincRNA Interval_67223 chr16 44532888 44533751 + 0 NA intron (ENSMUSG00000022687.12, intron 1 of 18) protein_coding-intron (ENSMUSG00000022687.12, intron 1 of 18) 24810 ENSMUSG00000093046.1 ENSMUSG00000093046 ENSMUST00000175305 Mir3081 miRNA Interval_84744 chr19 16158800 16159065 + 0 NA intron (ENSMUSG00000024639.5, intron 1 of 2) protein_coding-intron (ENSMUSG00000024639.5, intron 1 of 6) 5873 ENSMUSG00000057990.4 ENSMUSG00000057990 ENSMUST00000075293 E030024N20Rik processed_pseudogene Interval_113861 chr4 59407561 59407925 + 0 NA intron (ENSMUSG00000038578.15, intron 5 of 16) protein_coding-intron (ENSMUSG00000038578.15, intron 5 of 16) -38877 ENSMUSG00000083979.1 ENSMUSG00000083979 ENSMUST00000117967 Gm12527 processed_pseudogene Interval_1349 chr1 20890098 20891749 + 0 NA promoter-TSS (ENSMUSG00000097934.1) lincRNA-promoter-TSS (ENSMUSG00000097934.1) 317 ENSMUSG00000025931.15 ENSMUSG00000025931 ENSMUST00000187651 Paqr8 protein_coding Interval_7993 chr1 135108709 135110574 + 0 NA promoter-TSS (ENSMUSG00000097993.7) polymorphic_pseudogene-promoter-TSS (ENSMUSG00000097993.7) 680 ENSMUSG00000097988.1 ENSMUSG00000097988 ENSMUST00000182275 Gm10535 antisense Interval_67805 chr16 57303413 57304724 + 0 NA intron (ENSMUSG00000022748.8, intron 8 of 9) protein_coding-intron (ENSMUSG00000022748.8, intron 8 of 9) -11217 ENSMUSG00000022753.15 ENSMUSG00000022753 ENSMUST00000120112 Tmem30c protein_coding Interval_151789 chr7 126679780 126680720 + 0 NA Intergenic Intergenic -3875 ENSMUSG00000030711.16 ENSMUSG00000030711 ENSMUST00000155419 Sult1a1 protein_coding Interval_110652 chr4 5724691 5725367 + 0 NA intron (ENSMUSG00000049119.14, intron 1 of 2) protein_coding-intron (ENSMUSG00000049119.14, intron 1 of 2) -37227 ENSMUSG00000077392.1 ENSMUSG00000077392 ENSMUST00000104204 Gm24337 snoRNA Interval_155488 chr8 33878720 33880365 + 0 NA intron (ENSMUSG00000031586.17, intron 1 of 8) protein_coding-intron (ENSMUSG00000031586.17, intron 1 of 7) 6205 ENSMUSG00000098166.1 ENSMUSG00000098166 ENSMUST00000182843 Gm26978 sense_intronic Interval_46926 chr13 73475373 73476057 + 0 NA intron (ENSMUSG00000021608.15, intron 1 of 13) protein_coding-intron (ENSMUSG00000021608.15, intron 1 of 13) 3964 ENSMUSG00000021608.15 ENSMUSG00000021608 ENSMUST00000222881 Lpcat1 protein_coding Interval_80827 chr18 47730050 47730520 + 0 NA exon (ENSMUSG00000117765.1, exon 1 of 2) processed_pseudogene-exon (ENSMUSG00000117765.1, exon 1 of 2) 518 ENSMUSG00000117765.1 ENSMUSG00000117765 ENSMUST00000237983 Gm5236 processed_pseudogene Interval_1580 chr1 27486342 27487450 + 0 NA Intergenic Intergenic -150128 ENSMUSG00000100310.1 ENSMUSG00000100310 ENSMUST00000188432 Gm19641 processed_pseudogene Interval_103490 chr3 44463033 44463562 + 0 NA Intergenic Intergenic 30606 ENSMUSG00000104013.1 ENSMUSG00000104013 ENSMUST00000193109 Gm37365 processed_pseudogene Interval_1128 chr1 15866763 15867753 + 0 NA intron (ENSMUSG00000032719.4, intron 2 of 4) protein_coding-intron (ENSMUSG00000032719.4, intron 2 of 4) -12272 ENSMUSG00000088943.1 ENSMUSG00000088943 ENSMUST00000158318 Gm23259 misc_RNA Interval_71134 chr17 19438221 19438484 + 0 NA intron (ENSMUSG00000116984.1, intron 3 of 7) lincRNA-intron (ENSMUSG00000116984.1, intron 3 of 7) -14973 ENSMUSG00000093627.2 ENSMUSG00000093627 ENSMUST00000176230 Vmn2r-ps121 unprocessed_pseudogene Interval_69836 chr16 97312834 97313615 + 0 NA Intergenic Intergenic -92045 ENSMUSG00000116686.1 ENSMUSG00000116686 ENSMUST00000232315 Gm49681 processed_pseudogene Interval_70657 chr17 12862654 12862912 + 0 NA intron (ENSMUSG00000068037.11, intron 3 of 8) protein_coding-intron (ENSMUSG00000068037.11, intron 3 of 8) 2457 ENSMUSG00000092913.1 ENSMUSG00000092913 ENSMUST00000175172 Gm24085 miRNA Interval_172505 chrX 21922208 21922894 + 0 NA Intergenic Intergenic -20713 ENSMUSG00000065074.1 ENSMUSG00000065074 ENSMUST00000083140 Gm24535 snRNA Interval_23453 chr11 22707672 22708544 + 0 NA Intergenic Intergenic 24878 ENSMUSG00000085979.1 ENSMUSG00000085979 ENSMUST00000143643 Gm12055 lincRNA Interval_165341 chr9 46415206 46417599 + 0 NA Intergenic Intergenic 19040 ENSMUSG00000110802.1 ENSMUSG00000110802 ENSMUST00000213920 Gm47141 lincRNA Interval_42304 chr13 11927623 11928321 + 0 NA intron (ENSMUSG00000021313.16, intron 2 of 2) protein_coding-intron (ENSMUSG00000021313.16, intron 2 of 104) -11586 ENSMUSG00000098110.1 ENSMUSG00000098110 ENSMUST00000182176 Gm26956 processed_pseudogene Interval_85555 chr19 28502794 28503446 + 0 NA intron (ENSMUSG00000052942.13, intron 4 of 10) protein_coding-intron (ENSMUSG00000052942.13, intron 3 of 9) 80174 ENSMUSG00000089952.1 ENSMUSG00000089952 ENSMUST00000162380 4933413C19Rik sense_intronic Interval_159704 chr8 98463580 98463866 + 0 NA Intergenic Intergenic 211479 ENSMUSG00000080480.1 ENSMUSG00000080480 ENSMUST00000116830 Gm23494 snRNA Interval_106700 chr3 99195564 99197351 + 0 NA intron (ENSMUSG00000004233.14, intron 2 of 8) protein_coding-intron (ENSMUSG00000004233.14, intron 2 of 5) 2996 ENSMUSG00000098918.1 ENSMUSG00000098918 ENSMUST00000184617 Mir6481 miRNA Interval_106725 chr3 100119199 100119402 + 0 NA intron (ENSMUSG00000027867.10, intron 45 of 48) protein_coding-intron (ENSMUSG00000027867.10, intron 45 of 48) -12405 ENSMUSG00000085244.8 ENSMUSG00000085244 ENSMUST00000137776 Spag17os antisense Interval_8146 chr1 136050698 136051769 + 0 NA exon (ENSMUSG00000097918.1, exon 1 of 1) protein_coding-exon (ENSMUSG00000097918.1, exon 1 of 1) 429 ENSMUSG00000097918.1 ENSMUSG00000097918 ENSMUST00000180436 Ascl5 protein_coding Interval_44636 chr13 46832940 46833420 + 0 NA intron (ENSMUSG00000021375.11, intron 4 of 25) protein_coding-intron (ENSMUSG00000021375.11, intron 4 of 37) -24123 ENSMUSG00000021375.11 ENSMUSG00000021375 ENSMUST00000224923 Kif13a protein_coding Interval_160373 chr8 108794251 108794972 + 0 NA exon (ENSMUSG00000038872.10, exon 2 of 10) protein_coding-exon (ENSMUSG00000038872.10, exon 2 of 10) 57018 ENSMUSG00000104292.1 ENSMUSG00000104292 ENSMUST00000191614 Gm38042 TEC Interval_34558 chr12 5111316 5111804 + 0 NA intron (ENSMUSG00000020627.10, intron 4 of 11) protein_coding-intron (ENSMUSG00000020627.10, intron 5 of 13) -44112 ENSMUSG00000112723.1 ENSMUSG00000112723 ENSMUST00000219035 Gm9110 processed_pseudogene Interval_66512 chr16 34657086 34658519 + 0 NA intron (ENSMUSG00000022832.11, intron 1 of 5) protein_coding-intron (ENSMUSG00000022832.11, intron 1 of 5) -8515 ENSMUSG00000022832.11 ENSMUSG00000022832 ENSMUST00000231612 Ropn1 protein_coding Interval_132383 chr5 144617482 144618080 + 0 NA Intergenic Intergenic 71879 ENSMUSG00000059991.7 ENSMUSG00000059991 ENSMUST00000071782 Nptx2 protein_coding Interval_34614 chr12 7962790 7963635 + 0 NA Intergenic Intergenic -13151 ENSMUSG00000112006.1 ENSMUSG00000112006 ENSMUST00000218264 Gm48633 lincRNA Interval_75815 chr17 71597219 71599549 + 0 NA promoter-TSS (ENSMUSG00000085492.7) antisense-promoter-TSS (ENSMUSG00000085492.7) -131 ENSMUSG00000085492.7 ENSMUSG00000085492 ENSMUST00000143828 Trmt61b antisense Interval_8850 chr1 151535688 151536023 + 0 NA Intergenic Intergenic 15088 ENSMUSG00000100357.1 ENSMUSG00000100357 ENSMUST00000191460 Gm28181 lincRNA Interval_73010 chr17 34118208 34122896 + 0 NA promoter-TSS (ENSMUSG00000024335.20) protein_coding-promoter-TSS (ENSMUSG00000024335.20) -16 ENSMUSG00000117829.1 ENSMUSG00000117829 ENSMUST00000237050 Gm50336 antisense Interval_25581 chr11 49928177 49928634 + 0 NA intron (ENSMUSG00000020374.16, intron 1 of 13) protein_coding-intron (ENSMUSG00000020374.16, intron 1 of 13) 32674 ENSMUSG00000080487.1 ENSMUSG00000080487 ENSMUST00000116837 Gm23492 miRNA Interval_93943 chr2 79676632 79677489 + 0 NA Intergenic Intergenic 37878 ENSMUSG00000027007.16 ENSMUSG00000027007 ENSMUST00000133266 Itprid2 protein_coding Interval_2500 chr1 39761170 39762748 + 0 NA Intergenic Intergenic -40962 ENSMUSG00000057173.8 ENSMUSG00000057173 ENSMUST00000126760 Rfx8 protein_coding Interval_102028 chr3 15267001 15267597 + 0 NA Intergenic Intergenic 65003 ENSMUSG00000078783.1 ENSMUSG00000078783 ENSMUST00000108361 Gm9733 protein_coding Interval_116432 chr4 111907758 111908463 + 0 NA Intergenic Intergenic -11445 ENSMUSG00000078599.9 ENSMUSG00000078599 ENSMUST00000129547 Skint8 protein_coding Interval_31194 chr11 98817190 98817616 + 0 NA intron (ENSMUSG00000078676.9, intron 3 of 5) protein_coding-intron (ENSMUSG00000078676.9, intron 4 of 14) -7316 ENSMUSG00000075576.12 ENSMUSG00000075576 ENSMUST00000141696 Gm12359 antisense Interval_98451 chr2 152449367 152450640 + 0 NA Intergenic Intergenic -7768 ENSMUSG00000083230.1 ENSMUSG00000083230 ENSMUST00000118409 Gm14158 processed_pseudogene Interval_143003 chr6 148277177 148278208 + 0 NA intron (ENSMUSG00000030306.14, intron 10 of 18) protein_coding-intron (ENSMUSG00000030306.14, intron 11 of 19) 16542 ENSMUSG00000082199.1 ENSMUSG00000082199 ENSMUST00000120136 Gm15763 processed_pseudogene Interval_132971 chr5 149027283 149027589 + 0 NA Intergenic Intergenic -11623 ENSMUSG00000085971.4 ENSMUSG00000085971 ENSMUST00000202128 Gm15411 processed_transcript Interval_98337 chr2 151581398 151582117 + 0 NA intron (ENSMUSG00000027456.8, intron 1 of 8) protein_coding-intron (ENSMUSG00000027456.8, intron 1 of 8) 9135 ENSMUSG00000027456.8 ENSMUSG00000027456 ENSMUST00000028950 Sdcbp2 protein_coding Interval_141341 chr6 127448163 127448587 + 0 NA promoter-TSS (ENSMUSG00000037997.12) protein_coding-promoter-TSS (ENSMUSG00000037997.12) -23152 ENSMUSG00000037997.12 ENSMUSG00000037997 ENSMUST00000134018 Parp11 protein_coding Interval_631 chr1 9263359 9263860 + 0 NA intron (ENSMUSG00000025909.16, intron 1 of 4) protein_coding-intron (ENSMUSG00000025909.16, intron 1 of 4) -4475 ENSMUSG00000103819.1 ENSMUSG00000103819 ENSMUST00000195333 Gm38008 processed_pseudogene Interval_114965 chr4 87754236 87755105 + 0 NA Intergenic Intergenic 51653 ENSMUSG00000028496.17 ENSMUSG00000028496 ENSMUST00000142454 Mllt3 protein_coding Interval_58872 chr15 39486357 39486672 + 0 NA intron (ENSMUSG00000037386.16, intron 10 of 23) protein_coding-intron (ENSMUSG00000037386.16, intron 13 of 26) 49276 ENSMUSG00000037386.16 ENSMUSG00000037386 ENSMUST00000226410 Rims2 protein_coding Interval_86651 chr19 42306619 42307658 + 0 NA intron (ENSMUSG00000042401.8, intron 6 of 14) protein_coding-intron (ENSMUSG00000042401.8, intron 6 of 14) -26968 ENSMUSG00000093234.1 ENSMUSG00000093234 ENSMUST00000175493 Mir3085 miRNA Interval_159478 chr8 94974614 94975064 + 0 NA promoter-TSS (ENSMUSG00000031785.16) protein_coding-promoter-TSS (ENSMUSG00000031785.16) -5085 ENSMUSG00000070111.4 ENSMUSG00000070111 ENSMUST00000093603 Gm10286 TEC Interval_25907 chr11 52466868 52467267 + 0 NA Intergenic Intergenic 12036 ENSMUSG00000081297.1 ENSMUSG00000081297 ENSMUST00000120089 Gm12209 processed_pseudogene Interval_101255 chr2 179884508 179885244 + 0 NA intron (ENSMUSG00000000305.12, intron 9 of 15) protein_coding-intron (ENSMUSG00000000305.12, intron 9 of 15) -91117 ENSMUSG00000085704.1 ENSMUSG00000085704 ENSMUST00000150145 4921531C22Rik processed_transcript Interval_136421 chr6 54326239 54328005 + 0 NA exon (ENSMUSG00000045725.5, exon 1 of 2) protein_coding-exon (ENSMUSG00000045725.5, exon 1 of 2) 219 ENSMUSG00000073067.10 ENSMUSG00000073067 ENSMUST00000135612 9130019P16Rik processed_transcript Interval_168932 chr9 89159343 89159563 + 0 NA TTS (ENSMUSG00000077465.1) snoRNA-TTS (ENSMUSG00000077465.1) 454 ENSMUSG00000077465.1 ENSMUSG00000077465 ENSMUST00000104277 Gm26423 snoRNA Interval_18941 chr10 93278215 93279279 + 0 NA intron (ENSMUSG00000008398.16, intron 2 of 5) protein_coding-intron (ENSMUSG00000008398.16, intron 2 of 4) 32222 ENSMUSG00000008398.16 ENSMUSG00000008398 ENSMUST00000133365 Elk3 protein_coding Interval_99547 chr2 163072979 163076318 + 0 NA promoter-TSS (ENSMUSG00000017861.11) protein_coding-promoter-TSS (ENSMUSG00000017861.11) -97 ENSMUSG00000017861.11 ENSMUSG00000017861 ENSMUST00000133322 Mybl2 protein_coding Interval_99642 chr2 163858124 163859013 + 0 NA exon (ENSMUSG00000035238.4, exon 2 of 2) protein_coding-exon (ENSMUSG00000035238.4, exon 2 of 2) 4835 ENSMUSG00000035238.4 ENSMUSG00000035238 ENSMUST00000109396 Kcnk15 protein_coding Interval_156779 chr8 59058037 59059210 + 0 NA Intergenic Intergenic 34800 ENSMUSG00000109746.1 ENSMUSG00000109746 ENSMUST00000210423 Gm7499 processed_pseudogene Interval_21522 chr10 129123460 129123644 + 0 NA Intergenic Intergenic -5691 ENSMUSG00000042801.5 ENSMUSG00000042801 ENSMUST00000050915 Olfr769 protein_coding Interval_109018 chr3 135188466 135188665 + 0 NA Intergenic Intergenic 17936 ENSMUSG00000105266.1 ENSMUSG00000105266 ENSMUST00000197245 Gm18546 processed_pseudogene Interval_146730 chr7 49774502 49775065 + 0 NA TTS (ENSMUSG00000039745.8) protein_coding-TTS (ENSMUSG00000039745.8) -9418 ENSMUSG00000030505.17 ENSMUSG00000030505 ENSMUST00000130907 Prmt3 protein_coding Interval_16640 chr10 66748515 66749217 + 0 NA Intergenic Intergenic -7707 ENSMUSG00000112159.1 ENSMUSG00000112159 ENSMUST00000219914 Gm18777 processed_pseudogene Interval_141665 chr6 132916322 132916919 + 0 NA Intergenic Intergenic 6969 ENSMUSG00000059410.5 ENSMUSG00000059410 ENSMUST00000076119 Tas2r125 protein_coding Interval_50255 chr14 11481207 11483042 + 0 NA intron (ENSMUSG00000114786.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000114786.1, intron 1 of 1) 9534 ENSMUSG00000114850.1 ENSMUSG00000114850 ENSMUST00000224598 Gm8438 processed_pseudogene Interval_74081 chr17 46483197 46484850 + 0 NA intron (ENSMUSG00000015599.9, intron 1 of 2) protein_coding-intron (ENSMUSG00000015599.9, intron 2 of 14) 272 ENSMUSG00000015599.9 ENSMUSG00000015599 ENSMUST00000223818 Ttbk1 protein_coding Interval_32337 chr11 107044242 107046101 + 0 NA intron (ENSMUSG00000040481.17, intron 1 of 5) protein_coding-intron (ENSMUSG00000040481.17, intron 24 of 27) 2172 ENSMUSG00000040481.17 ENSMUSG00000040481 ENSMUST00000149486 Bptf protein_coding Interval_54574 chr14 70751316 70751919 + 0 NA intron (ENSMUSG00000022100.14, intron 1 of 21) protein_coding-intron (ENSMUSG00000022100.14, intron 1 of 27) -24262 ENSMUSG00000022102.13 ENSMUSG00000022102 ENSMUST00000164691 Dok2 protein_coding Interval_43783 chr13 36402212 36402546 + 0 NA intron (ENSMUSG00000021420.13, intron 1 of 2) protein_coding-intron (ENSMUSG00000021420.13, intron 5 of 6) 56901 ENSMUSG00000114714.1 ENSMUSG00000114714 ENSMUST00000224213 Gm48763 TEC Interval_53876 chr14 63049643 63051182 + 0 NA promoter-TSS (ENSMUSG00000075571.8) protein_coding-promoter-TSS (ENSMUSG00000075571.8) -457 ENSMUSG00000075571.8 ENSMUSG00000075571 ENSMUST00000100490 Defb30 protein_coding Interval_61035 chr15 78895815 78898782 + 0 NA Intergenic Intergenic -2369 ENSMUSG00000116069.1 ENSMUSG00000116069 ENSMUST00000134703 Gm49510 protein_coding Interval_98091 chr2 147895310 147895959 + 0 NA Intergenic Intergenic -20756 ENSMUSG00000065791.1 ENSMUSG00000065791 ENSMUST00000083857 Gm25516 snRNA Interval_3624 chr1 60074220 60074985 + 0 NA exon (ENSMUSG00000026019.15, exon 13 of 13) protein_coding-exon (ENSMUSG00000026019.15, exon 13 of 13) 11160 ENSMUSG00000026019.15 ENSMUSG00000026019 ENSMUST00000133767 Wdr12 protein_coding Interval_113964 chr4 61989605 61991161 + 0 NA Intergenic Intergenic 24474 ENSMUSG00000084309.1 ENSMUSG00000084309 ENSMUST00000121132 Mup-ps20 unprocessed_pseudogene Interval_145445 chr7 34798139 34800267 + 0 NA intron (ENSMUSG00000060402.8, intron 1 of 2) protein_coding-intron (ENSMUSG00000060402.8, intron 1 of 3) -45391 ENSMUSG00000060402.8 ENSMUSG00000060402 ENSMUST00000205390 Chst8 protein_coding Interval_71882 chr17 26705434 26705710 + 0 NA Intergenic Intergenic 29415 ENSMUSG00000015575.15 ENSMUSG00000015575 ENSMUST00000167352 Atp6v0e protein_coding Interval_30305 chr11 93351234 93351487 + 0 NA intron (ENSMUSG00000056158.14, intron 4 of 9) protein_coding-intron (ENSMUSG00000056158.14, intron 4 of 9) 61964 ENSMUSG00000064743.1 ENSMUSG00000064743 ENSMUST00000082809 Gm24856 snRNA Interval_6231 chr1 103244228 103244668 + 0 NA intron (ENSMUSG00000100955.1, intron 4 of 4) unprocessed_pseudogene-intron (ENSMUSG00000100955.1, intron 4 of 4) -7681 ENSMUSG00000088594.1 ENSMUSG00000088594 ENSMUST00000157969 Gm23965 snoRNA Interval_106991 chr3 102668352 102668729 + 0 NA Intergenic Intergenic 18177 ENSMUSG00000104685.1 ENSMUSG00000104685 ENSMUST00000198096 Gm19202 processed_pseudogene Interval_172360 chrX 13485442 13487175 + 0 NA exon (ENSMUSG00000051228.5, exon 3 of 3) protein_coding-exon (ENSMUSG00000051228.5, exon 3 of 3) 4725 ENSMUSG00000081597.1 ENSMUSG00000081597 ENSMUST00000121165 Gm14506 processed_pseudogene Interval_35148 chr12 17567848 17569019 + 0 NA TTS (ENSMUSG00000113131.1) processed_pseudogene-TTS (ENSMUSG00000113131.1) 416 ENSMUSG00000113131.1 ENSMUSG00000113131 ENSMUST00000222500 Gm48290 processed_pseudogene Interval_52751 chr14 49361778 49363021 + 0 NA intron (ENSMUSG00000021852.14, intron 1 of 2) protein_coding-intron (ENSMUSG00000021852.14, intron 1 of 7) 62563 ENSMUSG00000115096.1 ENSMUSG00000115096 ENSMUST00000228016 Gm48940 antisense Interval_115926 chr4 106327554 106328071 + 0 NA intron (ENSMUSG00000028514.15, intron 1 of 67) protein_coding-intron (ENSMUSG00000028514.15, intron 1 of 67) 11599 ENSMUSG00000028514.15 ENSMUSG00000028514 ENSMUST00000150521 Usp24 protein_coding Interval_162819 chr9 9544515 9545478 + 0 NA intron (ENSMUSG00000111061.1, intron 1 of 3) lincRNA-intron (ENSMUSG00000111061.1, intron 1 of 3) -19091 ENSMUSG00000111284.1 ENSMUSG00000111284 ENSMUST00000215363 Gm47334 lincRNA Interval_22379 chr11 9271378 9271722 + 0 NA intron (ENSMUSG00000004668.14, intron 10 of 61) protein_coding-intron (ENSMUSG00000004668.14, intron 10 of 61) 78099 ENSMUSG00000004668.14 ENSMUSG00000004668 ENSMUST00000151522 Abca13 protein_coding Interval_137180 chr6 69327586 69327890 + 0 NA promoter-TSS (ENSMUSG00000088675.1) ribozyme-promoter-TSS (ENSMUSG00000088675.1) -564 ENSMUSG00000106222.1 ENSMUSG00000106222 ENSMUST00000198476 Rprl1 lincRNA Interval_86498 chr19 41120667 41121537 + 0 NA intron (ENSMUSG00000025013.15, intron 7 of 20) protein_coding-intron (ENSMUSG00000025013.15, intron 7 of 20) -52979 ENSMUSG00000050121.9 ENSMUSG00000050121 ENSMUST00000087176 Opalin protein_coding Interval_114742 chr4 84668099 84669476 + 0 NA intron (ENSMUSG00000028487.18, intron 1 of 5) protein_coding-intron (ENSMUSG00000028487.18, intron 1 of 7) -29076 ENSMUSG00000081775.1 ENSMUSG00000081775 ENSMUST00000119869 Gm12420 processed_pseudogene Interval_16287 chr10 61977213 61979675 + 0 NA promoter-TSS (ENSMUSG00000058806.15) protein_coding-promoter-TSS (ENSMUSG00000058806.15) 18820 ENSMUSG00000112574.1 ENSMUSG00000112574 ENSMUST00000218711 Gm5750 processed_pseudogene Interval_100368 chr2 168674722 168675058 + 0 NA exon (ENSMUSG00000027546.15, exon 12 of 28) protein_coding-exon (ENSMUSG00000027546.15, exon 12 of 28) -34131 ENSMUSG00000105496.1 ENSMUSG00000105496 ENSMUST00000200215 Mir7004 miRNA Interval_157056 chr8 64839250 64839964 + 0 NA TTS (ENSMUSG00000109854.1) antisense-TTS (ENSMUSG00000109854.1) 1373 ENSMUSG00000109854.1 ENSMUSG00000109854 ENSMUST00000211427 Gm45345 antisense Interval_150685 chr7 113310343 113310783 + 0 NA intron (ENSMUSG00000055116.8, intron 18 of 19) protein_coding-intron (ENSMUSG00000055116.8, intron 18 of 19) -13695 ENSMUSG00000082183.1 ENSMUSG00000082183 ENSMUST00000118029 Gm15994 processed_pseudogene Interval_160639 chr8 111258434 111259716 + 0 NA exon (ENSMUSG00000003316.14, exon 1 of 25) protein_coding-exon (ENSMUSG00000003316.14, exon 1 of 25) 141 ENSMUSG00000003316.14 ENSMUSG00000003316 ENSMUST00000003404 Glg1 protein_coding Interval_170642 chr9 109855526 109856378 + 0 NA Intergenic Intergenic -6335 ENSMUSG00000038357.10 ENSMUSG00000038357 ENSMUST00000112022 Camp protein_coding Interval_81040 chr18 53244952 53246054 + 0 NA promoter-TSS (ENSMUSG00000024535.16) protein_coding-promoter-TSS (ENSMUSG00000024535.16) -225 ENSMUSG00000024535.16 ENSMUSG00000024535 ENSMUST00000025417 Snx24 protein_coding Interval_26654 chr11 59497916 59498314 + 0 NA intron (ENSMUSG00000020472.14, intron 6 of 9) protein_coding-intron (ENSMUSG00000020472.14, intron 6 of 9) -7570 ENSMUSG00000072893.12 ENSMUSG00000072893 ENSMUST00000130570 4933439C10Rik processed_transcript Interval_17422 chr10 76518168 76518706 + 0 NA Intergenic Intergenic -23445 ENSMUSG00000033105.12 ENSMUSG00000033105 ENSMUST00000162282 Lss protein_coding Interval_168973 chr9 89870134 89870387 + 0 NA Intergenic Intergenic -39652 ENSMUSG00000032356.12 ENSMUSG00000032356 ENSMUST00000190073 Rasgrf1 protein_coding Interval_9251 chr1 155493506 155493692 + 0 NA Intergenic Intergenic 33544 ENSMUSG00000073535.5 ENSMUSG00000073535 ENSMUST00000194133 Gm5532 lincRNA Interval_71933 chr17 27085707 27086370 + 0 NA intron (ENSMUSG00000042644.9, intron 4 of 57) protein_coding-intron (ENSMUSG00000042644.9, intron 4 of 57) -5207 ENSMUSG00000098826.1 ENSMUSG00000098826 ENSMUST00000184226 Mir7677 miRNA Interval_80784 chr18 47043894 47044131 + 0 NA intron (ENSMUSG00000042705.9, intron 5 of 6) protein_coding-intron (ENSMUSG00000042705.9, intron 5 of 6) -58531 ENSMUSG00000087857.1 ENSMUSG00000087857 ENSMUST00000157232 Gm22791 snoRNA Interval_88278 chr2 3248525 3249474 + 0 NA Intergenic Intergenic -35282 ENSMUSG00000026643.16 ENSMUSG00000026643 ENSMUST00000155761 Nmt2 protein_coding Interval_107912 chr3 116737132 116737595 + 0 NA Intergenic Intergenic -25151 ENSMUSG00000027957.13 ENSMUSG00000027957 ENSMUST00000169530 Slc35a3 protein_coding Interval_93612 chr2 74917710 74917940 + 0 NA Intergenic Intergenic 17689 ENSMUSG00000084574.1 ENSMUSG00000084574 ENSMUST00000122625 n-R5s198 rRNA Interval_115087 chr4 89468852 89470098 + 0 NA Intergenic Intergenic 24256 ENSMUSG00000098669.1 ENSMUSG00000098669 ENSMUST00000183666 Gm27580 misc_RNA Interval_119463 chr4 137751364 137752028 + 0 NA TTS (ENSMUSG00000028766.10) protein_coding-TTS (ENSMUSG00000028766.10) 30495 ENSMUSG00000028766.10 ENSMUSG00000028766 ENSMUST00000143757 Alpl protein_coding Interval_45120 chr13 52492506 52493201 + 0 NA Intergenic Intergenic 38426 ENSMUSG00000047842.7 ENSMUSG00000047842 ENSMUST00000057442 Diras2 protein_coding Interval_117206 chr4 120569533 120570929 + 0 NA promoter-TSS (ENSMUSG00000028633.7) protein_coding-promoter-TSS (ENSMUSG00000028633.7) -18515 ENSMUSG00000091297.2 ENSMUSG00000091297 ENSMUST00000238451 Gm8439 protein_coding Interval_49818 chr13 116495783 116496428 + 0 NA Intergenic Intergenic -134411 ENSMUSG00000114451.1 ENSMUSG00000114451 ENSMUST00000225190 Gm47912 processed_pseudogene Interval_1499 chr1 24231355 24232011 + 0 NA TTS (ENSMUSG00000026147.16) protein_coding-TTS (ENSMUSG00000026147.16) 2166 ENSMUSG00000026147.16 ENSMUSG00000026147 ENSMUST00000147902 Col9a1 protein_coding Interval_144353 chr7 24636400 24638956 + 0 NA intron (ENSMUSG00000057454.5, intron 2 of 4) protein_coding-intron (ENSMUSG00000057454.5, intron 2 of 4) 238 ENSMUSG00000097215.1 ENSMUSG00000097215 ENSMUST00000180699 Gm26550 antisense Interval_100892 chr2 173202838 173203199 + 0 NA Intergenic Intergenic 15879 ENSMUSG00000027514.14 ENSMUSG00000027514 ENSMUST00000109116 Zbp1 protein_coding Interval_139872 chr6 112197526 112197966 + 0 NA Intergenic Intergenic -12962 ENSMUSG00000100219.1 ENSMUSG00000100219 ENSMUST00000186102 1700054K19Rik lincRNA Interval_114079 chr4 63186458 63186667 + 0 NA Intergenic Intergenic -14433 ENSMUSG00000028357.13 ENSMUSG00000028357 ENSMUST00000154234 Kif12 protein_coding Interval_62259 chr15 89258707 89259171 + 0 NA promoter-TSS (ENSMUSG00000036561.9) protein_coding-promoter-TSS (ENSMUSG00000036561.9) 34871 ENSMUSG00000036529.17 ENSMUSG00000036529 ENSMUST00000146637 Sbf1 protein_coding Interval_169117 chr9 92835758 92836609 + 0 NA Intergenic Intergenic -59649 ENSMUSG00000099823.1 ENSMUSG00000099823 ENSMUST00000187280 Gm28054 lincRNA Interval_145384 chr7 34355785 34356417 + 0 NA intron (ENSMUSG00000066568.12, intron 6 of 9) protein_coding-intron (ENSMUSG00000066568.12, intron 6 of 10) -2606 ENSMUSG00000066568.12 ENSMUSG00000066568 ENSMUST00000206715 Lsm14a protein_coding Interval_56369 chr14 118168635 118169734 + 0 NA Intergenic Intergenic 32026 ENSMUSG00000022131.3 ENSMUSG00000022131 ENSMUST00000022728 Gpr180 protein_coding Interval_122032 chr5 14317269 14317564 + 0 NA Intergenic Intergenic 74954 ENSMUSG00000106310.1 ENSMUSG00000106310 ENSMUST00000197397 Gm43523 TEC Interval_79617 chr18 34031054 34032816 + 0 NA Intergenic Intergenic -7655 ENSMUSG00000088501.1 ENSMUSG00000088501 ENSMUST00000157876 Gm22788 snRNA Interval_173214 chrX 74269871 74271387 + 0 NA promoter-TSS (ENSMUSG00000008682.13) protein_coding-promoter-TSS (ENSMUSG00000008682.13) -228 ENSMUSG00000008682.13 ENSMUSG00000008682 ENSMUST00000146584 Rpl10 protein_coding Interval_113141 chr4 48584626 48586760 + 0 NA intron (ENSMUSG00000028347.14, intron 1 of 9) protein_coding-intron (ENSMUSG00000028347.14, intron 1 of 9) 45147 ENSMUSG00000039693.11 ENSMUSG00000039693 ENSMUST00000132360 Msantd3 protein_coding Interval_35514 chr12 24172632 24172915 + 0 NA Intergenic Intergenic 6496 ENSMUSG00000113632.1 ENSMUSG00000113632 ENSMUST00000222650 Gm47446 unprocessed_pseudogene Interval_33289 chr11 115728109 115728301 + 0 NA TTS (ENSMUSG00000089460.1) snoRNA-TTS (ENSMUSG00000089460.1) 1062 ENSMUSG00000089460.1 ENSMUSG00000089460 ENSMUST00000158835 Gm23699 snoRNA Interval_26780 chr11 60453478 60455023 + 0 NA promoter-TSS (ENSMUSG00000020537.9) protein_coding-promoter-TSS (ENSMUSG00000020537.9) -4280 ENSMUSG00000084249.1 ENSMUSG00000084249 ENSMUST00000121609 Gm12267 processed_pseudogene Interval_84239 chr19 8974847 8975154 + 0 NA intron (ENSMUSG00000071644.10, intron 2 of 4) protein_coding-intron (ENSMUSG00000071644.10, intron 7 of 9) 6784 ENSMUSG00000071644.10 ENSMUSG00000071644 ENSMUST00000135025 Eef1g protein_coding Interval_168882 chr9 88332316 88333245 + 0 NA intron (ENSMUSG00000032420.8, intron 1 of 5) protein_coding-intron (ENSMUSG00000032420.8, intron 1 of 8) -22907 ENSMUSG00000032420.8 ENSMUSG00000032420 ENSMUST00000217134 Nt5e protein_coding Interval_160308 chr8 107971190 107971409 + 0 NA intron (ENSMUSG00000038872.10, intron 1 of 15) protein_coding-intron (ENSMUSG00000038872.10, intron 1 of 15) -23260 ENSMUSG00000038872.10 ENSMUSG00000038872 ENSMUST00000043896 Zfhx3 protein_coding Interval_27515 chr11 68351951 68352533 + 0 NA intron (ENSMUSG00000020902.12, intron 3 of 7) protein_coding-intron (ENSMUSG00000020902.12, intron 2 of 6) 34770 ENSMUSG00000020902.12 ENSMUSG00000020902 ENSMUST00000135141 Ntn1 protein_coding Interval_2810 chr1 45672668 45673006 + 0 NA Intergenic Intergenic 12725 ENSMUSG00000095121.1 ENSMUSG00000095121 ENSMUST00000179545 Gm23216 snRNA Interval_87620 chr19 53760141 53760825 + 0 NA intron (ENSMUSG00000043639.15, intron 1 of 13) protein_coding-intron (ENSMUSG00000043639.15, intron 1 of 13) 7827 ENSMUSG00000089807.1 ENSMUSG00000089807 ENSMUST00000161107 Gm16298 processed_pseudogene Interval_143535 chr7 12277293 12277683 + 0 NA Intergenic Intergenic -9219 ENSMUSG00000115027.1 ENSMUSG00000115027 ENSMUST00000086232 Vmn1r81 protein_coding Interval_42320 chr13 12063660 12064699 + 0 NA intron (ENSMUSG00000021313.16, intron 1 of 2) protein_coding-intron (ENSMUSG00000021313.16, intron 1 of 104) -12124 ENSMUSG00000112947.1 ENSMUSG00000112947 ENSMUST00000220599 Gm47493 TEC Interval_98501 chr2 152816370 152817137 + 0 NA intron (ENSMUSG00000007659.18, intron 2 of 2) protein_coding-intron (ENSMUSG00000007659.18, intron 2 of 2) 11782 ENSMUSG00000007659.18 ENSMUSG00000007659 ENSMUST00000156688 Bcl2l1 protein_coding Interval_57580 chr15 12543466 12544573 + 0 NA TTS (ENSMUSG00000022197.16) protein_coding-TTS (ENSMUSG00000022197.16) 28511 ENSMUSG00000095516.1 ENSMUSG00000095516 ENSMUST00000179085 Gm24135 miRNA Interval_173965 chrX 117316769 117318153 + 0 NA Intergenic Intergenic -6953 ENSMUSG00000080852.1 ENSMUSG00000080852 ENSMUST00000118153 Gm14918 processed_pseudogene Interval_130274 chr5 125358188 125358443 + 0 NA Intergenic Intergenic -2860 ENSMUSG00000104932.1 ENSMUSG00000104932 ENSMUST00000200649 Gm40323 lincRNA Interval_146323 chr7 45339568 45342277 + 0 NA promoter-TSS (ENSMUSG00000003863.18) protein_coding-promoter-TSS (ENSMUSG00000003863.18) 238 ENSMUSG00000003863.18 ENSMUSG00000003863 ENSMUST00000209424 Ppfia3 protein_coding Interval_122136 chr5 17980035 17981067 + 0 NA intron (ENSMUSG00000028777.8, intron 1 of 7) protein_coding-intron (ENSMUSG00000028777.8, intron 1 of 7) 18002 ENSMUSG00000028777.8 ENSMUSG00000028777 ENSMUST00000030561 Gnat3 protein_coding Interval_79262 chr18 28470522 28471046 + 0 NA Intergenic Intergenic 37895 ENSMUSG00000117449.1 ENSMUSG00000117449 ENSMUST00000234566 Gm6643 processed_pseudogene Interval_127579 chr5 105536130 105537532 + 0 NA intron (ENSMUSG00000054720.12, intron 2 of 3) protein_coding-intron (ENSMUSG00000054720.12, intron 1 of 3) 17358 ENSMUSG00000054720.12 ENSMUSG00000054720 ENSMUST00000153754 Lrrc8c protein_coding Interval_41892 chr13 3944704 3945827 + 0 NA promoter-TSS (ENSMUSG00000044988.7) protein_coding-promoter-TSS (ENSMUSG00000044988.7) 84 ENSMUSG00000044988.7 ENSMUSG00000044988 ENSMUST00000058610 Ucn3 protein_coding Interval_271 KZ289068.1 456929 458826 + 0 NA NA NA NA NA Interval_145172 chr7 30443891 30445987 + 0 NA promoter-TSS (ENSMUSG00000006651.8) protein_coding-promoter-TSS (ENSMUSG00000006651.8) -343 ENSMUSG00000006651.8 ENSMUSG00000006651 ENSMUST00000209054 Aplp1 protein_coding Interval_83491 chr18 87322001 87322994 + 0 NA Intergenic Intergenic 90565 ENSMUSG00000118250.1 ENSMUSG00000118250 ENSMUST00000236658 Gm5234 processed_pseudogene Interval_162318 chr8 127040329 127040859 + 0 NA exon (ENSMUSG00000110492.1, exon 1 of 1) processed_pseudogene-exon (ENSMUSG00000110492.1, exon 1 of 1) 106 ENSMUSG00000110492.1 ENSMUSG00000110492 ENSMUST00000212814 Gm5358 processed_pseudogene Interval_141403 chr6 128047132 128047559 + 0 NA intron (ENSMUSG00000030352.15, intron 1 of 7) protein_coding-intron (ENSMUSG00000030352.15, intron 2 of 8) -12340 ENSMUSG00000030352.15 ENSMUSG00000030352 ENSMUST00000127075 Tspan9 protein_coding Interval_58052 chr15 27465852 27467356 + 0 NA promoter-TSS (ENSMUSG00000022265.7) protein_coding-promoter-TSS (ENSMUSG00000022265.7) -3155 ENSMUSG00000115138.1 ENSMUSG00000115138 ENSMUST00000227384 Gm36899 lincRNA Interval_102593 chr3 28091244 28091771 + 0 NA intron (ENSMUSG00000027695.16, intron 13 of 21) protein_coding-intron (ENSMUSG00000027695.16, intron 18 of 25) 12317 ENSMUSG00000027695.16 ENSMUSG00000027695 ENSMUST00000126594 Pld1 protein_coding Interval_120045 chr4 141510453 141511319 + 0 NA intron (ENSMUSG00000040761.16, intron 1 of 1) protein_coding-intron (ENSMUSG00000040761.16, intron 3 of 14) -22574 ENSMUSG00000040761.16 ENSMUSG00000040761 ENSMUST00000152081 Spen protein_coding Interval_92779 chr2 65393066 65393297 + 0 NA Intergenic Intergenic -16899 ENSMUSG00000088197.1 ENSMUSG00000088197 ENSMUST00000157572 Gm24138 snoRNA Interval_132642 chr5 146914131 146914640 + 0 NA Intergenic Intergenic -34272 ENSMUSG00000016503.18 ENSMUSG00000016503 ENSMUST00000133296 Gtf3a protein_coding Interval_163685 chr9 24328037 24328667 + 0 NA Intergenic Intergenic -13305 ENSMUSG00000074465.2 ENSMUSG00000074465 ENSMUST00000098926 Gm10701 antisense Interval_137744 chr6 82035247 82035617 + 0 NA Intergenic Intergenic -5611 ENSMUSG00000035104.14 ENSMUSG00000035104 ENSMUST00000149023 Eva1a protein_coding Interval_121861 chr5 8947654 8947941 + 0 NA intron (ENSMUSG00000042476.12, intron 23 of 27) protein_coding-intron (ENSMUSG00000042476.12, intron 23 of 27) 19071 ENSMUSG00000042476.12 ENSMUSG00000042476 ENSMUST00000197150 Abcb4 protein_coding Interval_140399 chr6 117851863 117852374 + 0 NA Intergenic Intergenic 10864 ENSMUSG00000059689.15 ENSMUSG00000059689 ENSMUST00000132644 Zfp637 protein_coding Interval_20862 chr10 121594729 121595948 + 0 NA intron (ENSMUSG00000034667.8, intron 2 of 3) protein_coding-intron (ENSMUSG00000034667.8, intron 23 of 24) 5475 ENSMUSG00000034667.8 ENSMUSG00000034667 ENSMUST00000217865 Xpot protein_coding Interval_109782 chr3 146939569 146940885 + 0 NA TTS (ENSMUSG00000036745.15) protein_coding-TTS (ENSMUSG00000036745.15) -3693 ENSMUSG00000036745.15 ENSMUSG00000036745 ENSMUST00000197547 Ttll7 protein_coding Interval_98776 chr2 154876913 154877500 + 0 NA intron (ENSMUSG00000074656.12, intron 6 of 9) protein_coding-intron (ENSMUSG00000074656.12, intron 6 of 8) 15576 ENSMUSG00000074656.12 ENSMUSG00000074656 ENSMUST00000135524 Eif2s2 protein_coding Interval_63604 chr15 102288636 102289051 + 0 NA Intergenic Intergenic 7308 ENSMUSG00000116091.1 ENSMUSG00000116091 ENSMUST00000229580 Gm49479 bidirectional_promoter_lncRNA Interval_173905 chrX 108893316 108893657 + 0 NA promoter-TSS (ENSMUSG00000081748.1) processed_pseudogene-promoter-TSS (ENSMUSG00000081748.1) -10 ENSMUSG00000081748.1 ENSMUSG00000081748 ENSMUST00000118414 Gm14870 processed_pseudogene Interval_12798 chr10 5560607 5561211 + 0 NA Intergenic Intergenic -32866 ENSMUSG00000046916.9 ENSMUSG00000046916 ENSMUST00000051809 Myct1 protein_coding Interval_111113 chr4 12134339 12135000 + 0 NA Intergenic Intergenic -2694 ENSMUSG00000082676.1 ENSMUSG00000082676 ENSMUST00000118984 Gm11843 processed_pseudogene Interval_59197 chr15 47601281 47601610 + 0 NA intron (ENSMUSG00000022311.15, intron 66 of 70) protein_coding-intron (ENSMUSG00000022311.15, intron 66 of 70) 81107 ENSMUSG00000115707.1 ENSMUSG00000115707 ENSMUST00000227023 Gm2267 processed_pseudogene Interval_158232 chr8 80276001 80276736 + 0 NA Intergenic Intergenic 81169 ENSMUSG00000110294.1 ENSMUSG00000110294 ENSMUST00000211276 Gm45430 lincRNA Interval_117984 chr4 127461877 127462706 + 0 NA Intergenic Intergenic -12611 ENSMUSG00000087470.2 ENSMUSG00000087470 ENSMUST00000146587 A630031M04Rik lincRNA Interval_75375 chr17 66223495 66224510 + 0 NA Intergenic Intergenic 4025 ENSMUSG00000117246.1 ENSMUSG00000117246 ENSMUST00000232894 Gm17891 processed_pseudogene Interval_152383 chr7 132638407 132639064 + 0 NA intron (ENSMUSG00000030946.13, intron 4 of 7) protein_coding-intron (ENSMUSG00000030946.13, intron 3 of 6) 17946 ENSMUSG00000030946.13 ENSMUSG00000030946 ENSMUST00000130672 Lhpp protein_coding Interval_80526 chr18 43352418 43352912 + 0 NA intron (ENSMUSG00000024501.20, intron 6 of 13) protein_coding-intron (ENSMUSG00000024501.20, intron 6 of 13) 20558 ENSMUSG00000024501.20 ENSMUSG00000024501 ENSMUST00000118071 Dpysl3 protein_coding Interval_14787 chr10 39896436 39896912 + 0 NA intron (ENSMUSG00000096687.8, intron 1 of 4) protein_coding-intron (ENSMUSG00000096687.8, intron 1 of 4) 2495 ENSMUSG00000096687.8 ENSMUSG00000096687 ENSMUST00000239084 Mfsd4b4 protein_coding Interval_45982 chr13 59769209 59770689 + 0 NA promoter-TSS (ENSMUSG00000044792.7) protein_coding-promoter-TSS (ENSMUSG00000044792.7) 452 ENSMUSG00000089875.2 ENSMUSG00000089875 ENSMUST00000162450 Etohd2 antisense Interval_162109 chr8 125222889 125225568 + 0 NA TTS (ENSMUSG00000086694.1) antisense-TTS (ENSMUSG00000086694.1) 3095 ENSMUSG00000086694.1 ENSMUSG00000086694 ENSMUST00000156666 Gm16237 antisense Interval_113599 chr4 56922557 56922739 + 0 NA intron (ENSMUSG00000055296.14, intron 6 of 17) protein_coding-intron (ENSMUSG00000055296.14, intron 6 of 17) 9006 ENSMUSG00000064595.1 ENSMUSG00000064595 ENSMUST00000082661 Gm22300 snoRNA Interval_153146 chr7 141636086 141636604 + 0 NA exon (ENSMUSG00000048191.15, exon 32 of 34) protein_coding-exon (ENSMUSG00000048191.15, exon 32 of 34) 15644 ENSMUSG00000098759.1 ENSMUSG00000098759 ENSMUST00000184158 Mir7063 miRNA Interval_136907 chr6 64120468 64121394 + 0 NA intron (ENSMUSG00000071424.10, intron 8 of 8) protein_coding-intron (ENSMUSG00000071424.10, intron 8 of 15) 28792 ENSMUSG00000107700.1 ENSMUSG00000107700 ENSMUST00000203031 Gm20144 processed_pseudogene Interval_3398 chr1 57969429 57970639 + 0 NA promoter-TSS (ENSMUSG00000054770.16) protein_coding-promoter-TSS (ENSMUSG00000054770.16) -7053 ENSMUSG00000054770.16 ENSMUSG00000054770 ENSMUST00000160130 Kctd18 protein_coding Interval_168068 chr9 75829370 75829689 + 0 NA intron (ENSMUSG00000032179.7, intron 1 of 2) protein_coding-intron (ENSMUSG00000032179.7, intron 2 of 6) 1507 ENSMUSG00000032179.7 ENSMUSG00000032179 ENSMUST00000137213 Bmp5 protein_coding Interval_53615 chr14 60122854 60123301 + 0 NA intron (ENSMUSG00000021983.16, intron 1 of 6) protein_coding-intron (ENSMUSG00000021983.16, intron 1 of 6) -17986 ENSMUSG00000075288.2 ENSMUSG00000075288 ENSMUST00000100019 Gm6913 processed_pseudogene Interval_86689 chr19 42639417 42639631 + 0 NA Intergenic Intergenic -30993 ENSMUSG00000025185.14 ENSMUSG00000025185 ENSMUST00000166128 Loxl4 protein_coding Interval_123995 chr5 37064176 37064660 + 0 NA intron (ENSMUSG00000063646.18, intron 1 of 1) protein_coding-intron (ENSMUSG00000063646.18, intron 1 of 12) -20952 ENSMUSG00000117286.1 ENSMUSG00000117286 ENSMUST00000094840 Gm1043 protein_coding Interval_96350 chr2 121889836 121890403 + 0 NA intron (ENSMUSG00000060227.15, intron 1 of 9) protein_coding-intron (ENSMUSG00000060227.15, intron 1 of 9) 1565 ENSMUSG00000087767.1 ENSMUSG00000087767 ENSMUST00000157142 Gm23983 rRNA Interval_134008 chr6 17681626 17682018 + 0 NA Intergenic Intergenic -11604 ENSMUSG00000098767.1 ENSMUSG00000098767 ENSMUST00000184623 Gm27755 misc_RNA Interval_107629 chr3 108990644 108990845 + 0 NA intron (ENSMUSG00000040339.10, intron 4 of 10) protein_coding-intron (ENSMUSG00000040339.10, intron 4 of 10) -9280 ENSMUSG00000106108.1 ENSMUSG00000106108 ENSMUST00000197612 Gm43221 antisense Interval_127304 chr5 102373571 102374045 + 0 NA Intergenic Intergenic -42395 ENSMUSG00000106295.1 ENSMUSG00000106295 ENSMUST00000197280 Gm42932 processed_pseudogene Interval_163848 chr9 27120607 27122840 + 0 NA intron (ENSMUSG00000031990.15, intron 1 of 2) protein_coding-intron (ENSMUSG00000031990.15, intron 1 of 8) 4827 ENSMUSG00000031990.15 ENSMUSG00000031990 ENSMUST00000213682 Jam3 protein_coding Interval_162568 chr9 4535659 4537000 + 0 NA intron (ENSMUSG00000025892.16, intron 4 of 15) protein_coding-intron (ENSMUSG00000025892.16, intron 5 of 16) -80306 ENSMUSG00000092896.2 ENSMUSG00000092896 ENSMUST00000175155 Gm23811 miRNA Interval_159633 chr8 95877920 95879101 + 0 NA intron (ENSMUSG00000031672.8, intron 1 of 9) protein_coding-intron (ENSMUSG00000031672.8, intron 1 of 9) 7696 ENSMUSG00000110711.1 ENSMUSG00000110711 ENSMUST00000212190 Gm45760 TEC Interval_142635 chr6 144453322 144455173 + 0 NA intron (ENSMUSG00000041540.16, intron 3 of 6) protein_coding-intron (ENSMUSG00000041540.16, intron 3 of 13) -26978 ENSMUSG00000087157.1 ENSMUSG00000087157 ENSMUST00000156443 Sox5os2 antisense Interval_122715 chr5 24841775 24843397 + 0 NA promoter-TSS (ENSMUSG00000028945.9) protein_coding-promoter-TSS (ENSMUSG00000028945.9) 23 ENSMUSG00000028945.9 ENSMUSG00000028945 ENSMUST00000196039 Rheb protein_coding Interval_1789 chr1 33793668 33794160 + 0 NA exon (ENSMUSG00000042197.13, exon 4 of 4) protein_coding-exon (ENSMUSG00000042197.13, exon 4 of 4) 20512 ENSMUSG00000042197.13 ENSMUSG00000042197 ENSMUST00000125723 Zfp451 protein_coding Interval_163811 chr9 26755622 26756064 + 0 NA exon (ENSMUSG00000045994.17, exon 4 of 6) protein_coding-exon (ENSMUSG00000045994.17, exon 4 of 6) 22040 ENSMUSG00000045994.17 ENSMUSG00000045994 ENSMUST00000159527 B3gat1 protein_coding Interval_155227 chr8 28208430 28208669 + 0 NA Intergenic Intergenic 22709 ENSMUSG00000098056.1 ENSMUSG00000098056 ENSMUST00000182906 Gm8100 processed_pseudogene Interval_141043 chr6 124593046 124593425 + 0 NA Intergenic Intergenic 22941 ENSMUSG00000098470.1 ENSMUSG00000098470 ENSMUST00000184647 C1rb protein_coding Interval_124067 chr5 37976127 37976703 + 0 NA Intergenic Intergenic -7278 ENSMUSG00000107126.1 ENSMUSG00000107126 ENSMUST00000201470 Gm40289 lincRNA Interval_96619 chr2 126572078 126573058 + 0 NA intron (ENSMUSG00000027359.16, intron 2 of 2) protein_coding-intron (ENSMUSG00000027359.16, intron 4 of 9) 7808 ENSMUSG00000027359.16 ENSMUSG00000027359 ENSMUST00000150947 Slc27a2 protein_coding Interval_115829 chr4 105109134 105110569 + 0 NA promoter-TSS (ENSMUSG00000028518.8) protein_coding-promoter-TSS (ENSMUSG00000028518.8) 39 ENSMUSG00000028518.8 ENSMUSG00000028518 ENSMUST00000030243 Prkaa2 protein_coding Interval_1206 chr1 17096769 17098705 + 0 NA exon (ENSMUSG00000042686.5, exon 1 of 5) protein_coding-exon (ENSMUSG00000042686.5, exon 1 of 5) -27010 ENSMUSG00000100110.1 ENSMUSG00000100110 ENSMUST00000188872 Gm28783 lincRNA Interval_146660 chr7 49245494 49246953 + 0 NA promoter-TSS (ENSMUSG00000052512.17) protein_coding-promoter-TSS (ENSMUSG00000052512.17) 50682 ENSMUSG00000103834.1 ENSMUSG00000103834 ENSMUST00000195677 Gm37613 TEC Interval_153481 chr7 145119893 145120491 + 0 NA Intergenic Intergenic -42804 ENSMUSG00000108967.1 ENSMUSG00000108967 ENSMUST00000207878 Gm45181 lincRNA Interval_148196 chr7 79750423 79750609 + 0 NA intron (ENSMUSG00000039099.7, intron 3 of 17) protein_coding-intron (ENSMUSG00000039099.7, intron 3 of 17) 7353 ENSMUSG00000039099.7 ENSMUSG00000039099 ENSMUST00000035622 Wdr93 protein_coding Interval_31390 chr11 100384971 100386989 + 0 NA intron (ENSMUSG00000001552.14, intron 2 of 2) protein_coding-intron (ENSMUSG00000001552.14, intron 2 of 13) 11783 ENSMUSG00000001552.14 ENSMUSG00000001552 ENSMUST00000123903 Jup protein_coding Interval_151087 chr7 118462769 118463539 + 0 NA Intergenic Intergenic -15098 ENSMUSG00000058420.8 ENSMUSG00000058420 ENSMUST00000207650 Syt17 protein_coding Interval_17408 chr10 76414941 76417423 + 0 NA intron (ENSMUSG00000001151.10, intron 13 of 41) protein_coding-intron (ENSMUSG00000001151.10, intron 13 of 41) 730 ENSMUSG00000001151.10 ENSMUSG00000001151 ENSMUST00000219701 Pcnt protein_coding Interval_119805 chr4 140088003 140088971 + 0 NA intron (ENSMUSG00000040972.8, intron 3 of 9) protein_coding-intron (ENSMUSG00000040972.8, intron 3 of 9) -43390 ENSMUSG00000085968.1 ENSMUSG00000085968 ENSMUST00000135858 Gm13027 antisense Interval_134475 chr6 29005466 29006485 + 0 NA intron (ENSMUSG00000092090.2, intron 1 of 1) lincRNA-intron (ENSMUSG00000092090.2, intron 1 of 1) -16644 ENSMUSG00000065469.1 ENSMUSG00000065469 ENSMUST00000083535 Mir129-1 miRNA Interval_70196 chr17 6095820 6096331 + 0 NA Intergenic Intergenic -10783 ENSMUSG00000034377.10 ENSMUSG00000034377 ENSMUST00000137063 Tulp4 protein_coding Interval_37118 chr12 58593277 58593552 + 0 NA Intergenic Intergenic -170492 ENSMUSG00000112487.1 ENSMUSG00000112487 ENSMUST00000219517 Gm18873 processed_pseudogene Interval_84642 chr19 14604237 14605236 + 0 NA Intergenic Intergenic -9197 ENSMUSG00000024642.17 ENSMUSG00000024642 ENSMUST00000235975 Tle4 protein_coding Interval_124487 chr5 48850135 48850330 + 0 NA intron (ENSMUSG00000029088.16, intron 1 of 8) protein_coding-intron (ENSMUSG00000029088.16, intron 1 of 8) -3897 ENSMUSG00000106414.1 ENSMUSG00000106414 ENSMUST00000196047 Gm43320 TEC Interval_79683 chr18 34498548 34498880 + 0 NA promoter-TSS (ENSMUSG00000036501.7) protein_coding-promoter-TSS (ENSMUSG00000036501.7) -811 ENSMUSG00000036501.7 ENSMUSG00000036501 ENSMUST00000236598 Fam13b protein_coding Interval_16263 chr10 61795848 61796162 + 0 NA Intergenic Intergenic -11858 ENSMUSG00000020086.6 ENSMUSG00000020086 ENSMUST00000020283 Macroh2a2 protein_coding Interval_14629 chr10 37223293 37224040 + 0 NA Intergenic Intergenic 40082 ENSMUSG00000110799.1 ENSMUSG00000110799 ENSMUST00000217044 4930543K20Rik lincRNA Interval_106471 chr3 96563572 96565415 + 0 NA intron (ENSMUSG00000074398.5, intron 1 of 3) antisense-intron (ENSMUSG00000074398.5, intron 1 of 3) 2308 ENSMUSG00000074398.5 ENSMUSG00000074398 ENSMUST00000107095 Gm15441 antisense Interval_74399 chr17 49935766 49936057 + 0 NA intron (ENSMUSG00000118549.1, intron 8 of 10) unprocessed_pseudogene-intron (ENSMUSG00000118549.1, intron 8 of 10) 8272 ENSMUSG00000118549.1 ENSMUSG00000118549 ENSMUST00000239022 AC114824.1 unprocessed_pseudogene Interval_101535 chr3 4335839 4336665 + 0 NA Intergenic Intergenic -2746 ENSMUSG00000094830.1 ENSMUSG00000094830 ENSMUST00000104719 n-R5s194 rRNA Interval_149943 chr7 103005172 103005395 + 0 NA promoter-TSS (ENSMUSG00000110033.1) unprocessed_pseudogene-promoter-TSS (ENSMUSG00000110033.1) -86 ENSMUSG00000110033.1 ENSMUSG00000110033 ENSMUST00000210954 AC161520.1 unprocessed_pseudogene Interval_82247 chr18 69574654 69574991 + 0 NA intron (ENSMUSG00000053477.17, intron 7 of 8) protein_coding-intron (ENSMUSG00000053477.17, intron 9 of 20) 22859 ENSMUSG00000088659.1 ENSMUSG00000088659 ENSMUST00000158034 Gm24845 rRNA Interval_169589 chr9 99319126 99319910 + 0 NA TTS (ENSMUSG00000037681.13) protein_coding-TTS (ENSMUSG00000037681.13) -3308 ENSMUSG00000103452.1 ENSMUSG00000103452 ENSMUST00000191694 1700008A23Rik TEC Interval_114098 chr4 63422977 63424263 + 0 NA intron (ENSMUSG00000039137.18, intron 2 of 6) protein_coding-intron (ENSMUSG00000039137.18, intron 7 of 11) 9702 ENSMUSG00000039137.18 ENSMUSG00000039137 ENSMUST00000140720 Whrn protein_coding Interval_157245 chr8 68376487 68376664 + 0 NA TTS (ENSMUSG00000085197.7) antisense-TTS (ENSMUSG00000085197.7) 8109 ENSMUSG00000085197.7 ENSMUSG00000085197 ENSMUST00000139265 1700125H03Rik antisense Interval_125718 chr5 73540073 73541073 + 0 NA intron (ENSMUSG00000051674.15, intron 7 of 8) protein_coding-intron (ENSMUSG00000051674.15, intron 7 of 10) 47917 ENSMUSG00000051674.15 ENSMUSG00000051674 ENSMUST00000136268 Dcun1d4 protein_coding Interval_12231 chr1 191002378 191002709 + 0 NA promoter-TSS (ENSMUSG00000103964.1) processed_pseudogene-promoter-TSS (ENSMUSG00000103964.1) -692 ENSMUSG00000103964.1 ENSMUSG00000103964 ENSMUST00000192719 Gm8407 processed_pseudogene Interval_161021 chr8 116950238 116951765 + 0 NA intron (ENSMUSG00000047388.10, intron 1 of 3) protein_coding-intron (ENSMUSG00000047388.10, intron 1 of 3) 7608 ENSMUSG00000047388.10 ENSMUSG00000047388 ENSMUST00000109099 Atmin protein_coding Interval_32627 chr11 109276240 109276499 + 0 NA intron (ENSMUSG00000020599.13, intron 3 of 16) protein_coding-intron (ENSMUSG00000020599.13, intron 3 of 18) -29404 ENSMUSG00000020599.13 ENSMUSG00000020599 ENSMUST00000106704 Rgs9 protein_coding Interval_165459 chr9 48352394 48355100 + 0 NA promoter-TSS (ENSMUSG00000032028.15) protein_coding-promoter-TSS (ENSMUSG00000032028.15) -12893 ENSMUSG00000032028.15 ENSMUSG00000032028 ENSMUST00000142667 Nxpe2 protein_coding Interval_42276 chr13 11537687 11538001 + 0 NA Intergenic Intergenic -14100 ENSMUSG00000113799.1 ENSMUSG00000113799 ENSMUST00000221403 Gm47487 TEC Interval_81589 chr18 61928739 61932065 + 0 NA Intergenic Intergenic 4818 ENSMUSG00000104035.1 ENSMUSG00000104035 ENSMUST00000194401 Gm37774 TEC Interval_100225 chr2 167774761 167775604 + 0 NA Intergenic Intergenic -2285 ENSMUSG00000084797.1 ENSMUSG00000084797 ENSMUST00000127441 Gm14321 lincRNA Interval_29170 chr11 80967506 80968370 + 0 NA intron (ENSMUSG00000020704.13, intron 2 of 9) protein_coding-intron (ENSMUSG00000020704.13, intron 2 of 9) -78856 ENSMUSG00000082027.1 ENSMUSG00000082027 ENSMUST00000119111 Gm11416 processed_pseudogene Interval_21715 chr11 3886749 3887977 + 0 NA exon (ENSMUSG00000020434.4, exon 3 of 3) protein_coding-exon (ENSMUSG00000020434.4, exon 3 of 3) 7735 ENSMUSG00000020434.4 ENSMUSG00000020434 ENSMUST00000020712 4921536K21Rik protein_coding Interval_156786 chr8 59649294 59650560 + 0 NA Intergenic Intergenic 90612 ENSMUSG00000088657.1 ENSMUSG00000088657 ENSMUST00000158032 Gm24847 snRNA Interval_157195 chr8 67480603 67481151 + 0 NA promoter-TSS (ENSMUSG00000025588.4) protein_coding-promoter-TSS (ENSMUSG00000025588.4) -44 ENSMUSG00000025588.4 ENSMUSG00000025588 ENSMUST00000026677 Nat1 protein_coding Interval_44753 chr13 48252132 48253369 + 0 NA intron (ENSMUSG00000114860.1, intron 1 of 1) antisense-intron (ENSMUSG00000097622.2, intron 1 of 2) -8478 ENSMUSG00000021379.2 ENSMUSG00000021379 ENSMUST00000021810 Id4 protein_coding Interval_5037 chr1 84549409 84550483 + 0 NA intron (ENSMUSG00000036766.12, intron 4 of 4) protein_coding-intron (ENSMUSG00000036766.12, intron 4 of 12) 73895 ENSMUSG00000036766.12 ENSMUSG00000036766 ENSMUST00000191546 Dner protein_coding Interval_6395 chr1 106860905 106861284 + 0 NA promoter-TSS (ENSMUSG00000067006.12) protein_coding-promoter-TSS (ENSMUSG00000067006.12) -80 ENSMUSG00000067006.12 ENSMUSG00000067006 ENSMUST00000112729 Serpinb5 protein_coding Interval_166960 chr9 64152369 64152610 + 0 NA intron (ENSMUSG00000032400.18, intron 11 of 16) protein_coding-intron (ENSMUSG00000032400.18, intron 12 of 18) 20424 ENSMUSG00000032400.18 ENSMUSG00000032400 ENSMUST00000151428 Zwilch protein_coding Interval_102155 chr3 18815822 18816121 + 0 NA Intergenic Intergenic 62894 ENSMUSG00000103264.1 ENSMUSG00000103264 ENSMUST00000194363 Gm30341 processed_pseudogene Interval_22264 chr11 8433093 8433434 + 0 NA exon (ENSMUSG00000020422.14, exon 31 of 31) protein_coding-exon (ENSMUSG00000020422.14, exon 31 of 31) -49410 ENSMUSG00000083553.1 ENSMUSG00000083553 ENSMUST00000117240 Gm11989 processed_pseudogene Interval_171037 chr9 113891952 113892300 + 0 NA intron (ENSMUSG00000033392.16, intron 24 of 34) protein_coding-intron (ENSMUSG00000033392.16, intron 22 of 32) -39503 ENSMUSG00000009741.15 ENSMUSG00000009741 ENSMUST00000216293 Ubp1 protein_coding Interval_58042 chr15 27159602 27159815 + 0 NA Intergenic Intergenic -97842 ENSMUSG00000088191.1 ENSMUSG00000088191 ENSMUST00000157566 Gm23903 snoRNA Interval_138821 chr6 92200071 92200317 + 0 NA promoter-TSS (ENSMUSG00000014550.14) protein_coding-promoter-TSS (ENSMUSG00000014550.14) -6066 ENSMUSG00000014550.14 ENSMUSG00000014550 ENSMUST00000138041 Rbsn protein_coding Interval_98879 chr2 155742403 155743734 + 0 NA Intergenic Intergenic -7202 ENSMUSG00000092123.1 ENSMUSG00000092123 ENSMUST00000166589 Gm17581 protein_coding Interval_161881 chr8 123406351 123407147 + 0 NA promoter-TSS (ENSMUSG00000074037.3) protein_coding-promoter-TSS (ENSMUSG00000074037.3) -358 ENSMUSG00000074037.3 ENSMUSG00000074037 ENSMUST00000098324 Mc1r protein_coding Interval_64563 chr16 13343303 13343586 + 0 NA intron (ENSMUSG00000009569.14, intron 3 of 16) protein_coding-intron (ENSMUSG00000009569.14, intron 3 of 16) -14977 ENSMUSG00000009569.14 ENSMUSG00000009569 ENSMUST00000149359 Mrtfb protein_coding Interval_104607 chr3 68744144 68744343 + 0 NA Intergenic Intergenic 11106 ENSMUSG00000058360.5 ENSMUSG00000058360 ENSMUST00000080726 Gm10040 pseudogene Interval_121302 chr4 154855568 154856888 + 0 NA promoter-TSS (ENSMUSG00000046637.3) protein_coding-promoter-TSS (ENSMUSG00000046637.3) -13357 ENSMUSG00000058183.14 ENSMUSG00000058183 ENSMUST00000129623 Mmel1 protein_coding Interval_28855 chr11 78793273 78793502 + 0 NA Intergenic Intergenic -31000 ENSMUSG00000088748.1 ENSMUSG00000088748 ENSMUST00000158123 Gm23219 snRNA Interval_39134 chr12 85353997 85354771 + 0 NA intron (ENSMUSG00000021248.9, intron 2 of 4) protein_coding-intron (ENSMUSG00000021248.9, intron 2 of 4) -2200 ENSMUSG00000113072.1 ENSMUSG00000113072 ENSMUST00000220964 Gm47820 processed_pseudogene Interval_154872 chr8 24525092 24525647 + 0 NA Intergenic Intergenic 18939 ENSMUSG00000109237.1 ENSMUSG00000109237 ENSMUST00000208727 9130214F15Rik TEC Interval_79836 chr18 35482894 35483404 + 0 NA intron (ENSMUSG00000024357.10, intron 1 of 2) protein_coding-intron (ENSMUSG00000024357.10, intron 1 of 9) -5955 ENSMUSG00000117731.1 ENSMUSG00000117731 ENSMUST00000237123 Gm50145 antisense Interval_119561 chr4 138377690 138378011 + 0 NA Intergenic Intergenic -17348 ENSMUSG00000046109.6 ENSMUSG00000046109 ENSMUST00000062902 AB041806 antisense Interval_172923 chrX 56240329 56240740 + 0 NA Intergenic Intergenic -27653 ENSMUSG00000073177.8 ENSMUSG00000073177 ENSMUST00000126937 Gm773 protein_coding Interval_99687 chr2 164255024 164255373 + 0 NA intron (ENSMUSG00000050383.5, intron 2 of 2) protein_coding-intron (ENSMUSG00000050383.5, intron 2 of 2) 1442 ENSMUSG00000050383.5 ENSMUSG00000050383 ENSMUST00000063132 Svs3b protein_coding Interval_149130 chr7 94394958 94395402 + 0 NA intron (ENSMUSG00000108532.1, intron 2 of 2) lincRNA-intron (ENSMUSG00000108532.1, intron 2 of 2) -22608 ENSMUSG00000108315.1 ENSMUSG00000108315 ENSMUST00000206678 Gm44601 lincRNA Interval_109194 chr3 137826877 137828385 + 0 NA Intergenic Intergenic -24162 ENSMUSG00000105427.1 ENSMUSG00000105427 ENSMUST00000198262 Gm31678 lincRNA Interval_137544 chr6 73020145 73021201 + 0 NA TTS (ENSMUSG00000107546.1) antisense-TTS (ENSMUSG00000107546.1) 8630 ENSMUSG00000107546.1 ENSMUSG00000107546 ENSMUST00000204577 Gm20560 antisense Interval_69329 chr16 92244779 92245036 + 0 NA Intergenic Intergenic -37419 ENSMUSG00000116878.1 ENSMUSG00000116878 ENSMUST00000231551 Gm29880 processed_transcript Interval_164030 chr9 31042906 31044325 + 0 NA intron (ENSMUSG00000047412.16, intron 1 of 5) protein_coding-intron (ENSMUSG00000047412.16, intron 1 of 5) -9624 ENSMUSG00000047412.16 ENSMUSG00000047412 ENSMUST00000213202 Zbtb44 protein_coding Interval_122947 chr5 27724410 27725169 + 0 NA intron (ENSMUSG00000061576.15, intron 25 of 25) protein_coding-intron (ENSMUSG00000061576.15, intron 25 of 25) 66902 ENSMUSG00000002221.11 ENSMUSG00000002221 ENSMUST00000199714 Paxip1 protein_coding Interval_110454 chr3 158376016 158376504 + 0 NA intron (ENSMUSG00000028176.13, intron 2 of 24) protein_coding-intron (ENSMUSG00000028176.13, intron 3 of 27) 81846 ENSMUSG00000106448.1 ENSMUSG00000106448 ENSMUST00000196431 Gm43486 TEC Interval_32010 chr11 104432165 104432402 + 0 NA intron (ENSMUSG00000018412.16, intron 1 of 2) protein_coding-intron (ENSMUSG00000018412.16, intron 2 of 14) -6983 ENSMUSG00000106014.1 ENSMUSG00000106014 ENSMUST00000195891 Gm47315 miRNA Interval_60513 chr15 74563283 74564569 + 0 NA promoter-TSS (ENSMUSG00000034730.17) protein_coding-promoter-TSS (ENSMUSG00000034730.17) 105 ENSMUSG00000093340.1 ENSMUSG00000093340 ENSMUST00000175599 Gm26117 miRNA Interval_174569 chrX 158869755 158870459 + 0 NA Intergenic Intergenic 36672 ENSMUSG00000082026.1 ENSMUSG00000082026 ENSMUST00000118817 Gm5764 processed_pseudogene Interval_103873 chr3 53983731 53983933 + 0 NA Intergenic Intergenic -37332 ENSMUSG00000103155.1 ENSMUSG00000103155 ENSMUST00000194076 Gm8109 processed_pseudogene Interval_152251 chr7 130944051 130946603 + 0 NA intron (ENSMUSG00000006205.13, intron 1 of 8) protein_coding-intron (ENSMUSG00000006205.13, intron 1 of 8) 1838 ENSMUSG00000006205.13 ENSMUSG00000006205 ENSMUST00000150905 Htra1 protein_coding Interval_16316 chr10 62145287 62145777 + 0 NA Intergenic Intergenic -10826 ENSMUSG00000020083.13 ENSMUSG00000020083 ENSMUST00000138450 Fam241b protein_coding Interval_125384 chr5 66594411 66595474 + 0 NA exon (ENSMUSG00000106706.1, exon 1 of 1) TEC-exon (ENSMUSG00000106706.1, exon 1 of 1) 628 ENSMUSG00000106706.1 ENSMUSG00000106706 ENSMUST00000201865 C530043K16Rik TEC Interval_31018 chr11 97732376 97733816 + 0 NA intron (ENSMUSG00000018547.8, intron 1 of 9) protein_coding-intron (ENSMUSG00000018547.8, intron 1 of 9) -6353 ENSMUSG00000018547.8 ENSMUSG00000018547 ENSMUST00000144012 Pip4k2b protein_coding Interval_105472 chr3 86852688 86854118 + 0 NA intron (ENSMUSG00000028078.14, intron 2 of 15) protein_coding-intron (ENSMUSG00000028078.14, intron 2 of 15) -11089 ENSMUSG00000104074.1 ENSMUSG00000104074 ENSMUST00000195159 Gm37025 processed_pseudogene Interval_92664 chr2 62191007 62191320 + 0 NA intron (ENSMUSG00000026904.17, intron 3 of 26) protein_coding-intron (ENSMUSG00000026904.17, intron 3 of 24) -126227 ENSMUSG00000026904.17 ENSMUSG00000026904 ENSMUST00000156534 Slc4a10 protein_coding Interval_39238 chr12 86129036 86130190 + 0 NA intron (ENSMUSG00000007867.9, intron 3 of 7) protein_coding-intron (ENSMUSG00000007867.9, intron 3 of 7) -39728 ENSMUSG00000097543.1 ENSMUSG00000097543 ENSMUST00000181667 Gm805 lincRNA Interval_141813 chr6 134666289 134667392 + 0 NA intron (ENSMUSG00000042992.15, intron 2 of 2) protein_coding-intron (ENSMUSG00000042992.15, intron 2 of 3) -23019 ENSMUSG00000108166.1 ENSMUSG00000108166 ENSMUST00000203231 Gm44017 sense_intronic Interval_91787 chr2 49570597 49571007 + 0 NA Intergenic Intergenic 41927 ENSMUSG00000069495.12 ENSMUSG00000069495 ENSMUST00000152485 Epc2 protein_coding Interval_51617 chr14 30795232 30795443 + 0 NA intron (ENSMUSG00000006527.16, intron 10 of 20) protein_coding-intron (ENSMUSG00000006527.16, intron 10 of 20) -9042 ENSMUSG00000115370.1 ENSMUSG00000115370 ENSMUST00000227272 Gm15667 processed_pseudogene Interval_17470 chr10 77106044 77106365 + 0 NA intron (ENSMUSG00000001435.15, intron 2 of 41) protein_coding-intron (ENSMUSG00000001435.15, intron 1 of 40) -30896 ENSMUSG00000112612.1 ENSMUSG00000112612 ENSMUST00000218871 Gm7775 processed_pseudogene Interval_76573 chr17 81354009 81355456 + 0 NA Intergenic Intergenic -16101 ENSMUSG00000117413.1 ENSMUSG00000117413 ENSMUST00000234591 Gm50044 antisense Interval_22290 chr11 8566378 8567073 + 0 NA intron (ENSMUSG00000020422.14, intron 4 of 30) protein_coding-intron (ENSMUSG00000020422.14, intron 4 of 30) 97956 ENSMUSG00000020422.14 ENSMUSG00000020422 ENSMUST00000134823 Tns3 protein_coding Interval_97749 chr2 143725155 143725948 + 0 NA intron (ENSMUSG00000027419.9, intron 5 of 11) protein_coding-intron (ENSMUSG00000027419.9, intron 5 of 11) 70414 ENSMUSG00000087115.7 ENSMUSG00000087115 ENSMUST00000156362 Pcsk2os2 antisense Interval_151257 chr7 120354025 120354401 + 0 NA intron (ENSMUSG00000054746.18, intron 11 of 14) protein_coding-intron (ENSMUSG00000054746.18, intron 11 of 30) 25543 ENSMUSG00000054746.18 ENSMUSG00000054746 ENSMUST00000076272 Abca15 protein_coding Interval_13604 chr10 20154972 20155215 + 0 NA intron (ENSMUSG00000019996.17, intron 1 of 6) protein_coding-intron (ENSMUSG00000019996.17, intron 1 of 17) -15895 ENSMUSG00000019996.17 ENSMUSG00000019996 ENSMUST00000216308 Map7 protein_coding Interval_54798 chr14 75197194 75199169 + 0 NA TTS (ENSMUSG00000021998.16) protein_coding-TTS (ENSMUSG00000021998.16) 1090 ENSMUSG00000090054.1 ENSMUSG00000090054 ENSMUST00000161819 Gm15629 antisense Interval_33174 chr11 114960252 114960852 + 0 NA promoter-TSS (ENSMUSG00000058728.15) protein_coding-promoter-TSS (ENSMUSG00000058728.15) 8605 ENSMUSG00000058728.15 ENSMUSG00000058728 ENSMUST00000061637 Cd300c protein_coding Interval_163073 chr9 15022624 15024258 + 0 NA intron (ENSMUSG00000031934.14, intron 1 of 4) protein_coding-intron (ENSMUSG00000031934.14, intron 1 of 3) 20356 ENSMUSG00000031934.14 ENSMUSG00000031934 ENSMUST00000169288 Panx1 protein_coding Interval_113273 chr4 52943168 52943456 + 0 NA Intergenic Intergenic -7031 ENSMUSG00000082216.4 ENSMUSG00000082216 ENSMUST00000121614 Olfr271-ps1 polymorphic_pseudogene Interval_121912 chr5 9498277 9498624 + 0 NA intron (ENSMUSG00000003974.6, intron 5 of 5) protein_coding-intron (ENSMUSG00000003974.6, intron 5 of 5) 104157 ENSMUSG00000106637.1 ENSMUSG00000106637 ENSMUST00000199761 Gm42455 TEC Interval_118310 chr4 130210390 130210613 + 0 NA promoter-TSS (ENSMUSG00000023120.9) protein_coding-promoter-TSS (ENSMUSG00000023120.9) -645 ENSMUSG00000023120.9 ENSMUSG00000023120 ENSMUST00000023884 Ldc1 protein_coding Interval_39237 chr12 86122187 86122373 + 0 NA intron (ENSMUSG00000007867.9, intron 3 of 7) protein_coding-intron (ENSMUSG00000007867.9, intron 3 of 7) 39672 ENSMUSG00000007867.9 ENSMUSG00000007867 ENSMUST00000220711 Ift43 protein_coding Interval_97285 chr2 132973473 132973875 + 0 NA Intergenic Intergenic 7494 ENSMUSG00000084393.1 ENSMUSG00000084393 ENSMUST00000121502 Gm14101 processed_pseudogene Interval_142859 chr6 146501018 146502741 + 0 NA promoter-TSS (ENSMUSG00000030287.15) protein_coding-promoter-TSS (ENSMUSG00000030287.15) -38272 ENSMUSG00000082120.1 ENSMUSG00000082120 ENSMUST00000117133 Gm15720 processed_pseudogene Interval_133090 chr5 149742095 149742768 + 0 NA intron (ENSMUSG00000051950.10, intron 1 of 4) protein_coding-intron (ENSMUSG00000051950.10, intron 10 of 14) 2899 ENSMUSG00000051950.10 ENSMUSG00000051950 ENSMUST00000201088 B3glct protein_coding Interval_41479 chr12 114831971 114832155 + 0 NA Intergenic Intergenic -2366 ENSMUSG00000096649.2 ENSMUSG00000096649 ENSMUST00000195735 Ighv1-31 IG_V_gene Interval_44641 chr13 46872412 46873241 + 0 NA intron (ENSMUSG00000021375.11, intron 2 of 2) protein_coding-intron (ENSMUSG00000021375.11, intron 2 of 37) -8201 ENSMUSG00000114917.1 ENSMUSG00000114917 ENSMUST00000225017 Gm48250 antisense Interval_165776 chr9 52677836 52680056 + 0 NA promoter-TSS (ENSMUSG00000111020.1) lincRNA-promoter-TSS (ENSMUSG00000111020.1) 834 ENSMUSG00000078307.3 ENSMUSG00000078307 ENSMUST00000213843 AI593442 protein_coding Interval_157991 chr8 77610132 77611126 + 0 NA promoter-TSS (ENSMUSG00000031617.16) protein_coding-promoter-TSS (ENSMUSG00000031617.16) 69 ENSMUSG00000031617.16 ENSMUSG00000031617 ENSMUST00000141202 Tmem184c protein_coding Interval_52689 chr14 48625135 48626573 + 0 NA Intergenic Intergenic -10287 ENSMUSG00000115376.1 ENSMUSG00000115376 ENSMUST00000227367 Gm35766 lincRNA Interval_49988 chr13 119362632 119364529 + 0 NA intron (ENSMUSG00000116207.1, intron 12 of 16) protein_coding-intron (ENSMUSG00000025453.18, intron 10 of 14) 45372 ENSMUSG00000116207.1 ENSMUSG00000116207 ENSMUST00000223268 Nnt protein_coding Interval_77889 chr18 5047817 5048347 + 0 NA intron (ENSMUSG00000024236.18, intron 5 of 37) protein_coding-intron (ENSMUSG00000024236.18, intron 2 of 34) 12916 ENSMUSG00000024236.18 ENSMUSG00000024236 ENSMUST00000129543 Svil protein_coding Interval_100920 chr2 173342839 173343316 + 0 NA Intergenic Intergenic -51489 ENSMUSG00000086114.1 ENSMUSG00000086114 ENSMUST00000147357 Gm14642 lincRNA Interval_98601 chr2 153519810 153521437 + 0 NA intron (ENSMUSG00000061411.12, intron 1 of 10) protein_coding-intron (ENSMUSG00000061411.12, intron 1 of 10) 27833 ENSMUSG00000079001.1 ENSMUSG00000079001 ENSMUST00000109783 4930404H24Rik protein_coding Interval_164006 chr9 30830011 30830403 + 0 NA Intergenic Intergenic -48728 ENSMUSG00000111867.1 ENSMUSG00000111867 ENSMUST00000213576 Gm31013 lincRNA Interval_104154 chr3 59175056 59175620 + 0 NA intron (ENSMUSG00000056476.13, intron 15 of 43) protein_coding-intron (ENSMUSG00000056476.13, intron 14 of 42) 19766 ENSMUSG00000051431.7 ENSMUSG00000051431 ENSMUST00000056898 Gpr87 protein_coding Interval_13433 chr10 18197072 18197773 + 0 NA intron (ENSMUSG00000071392.6, intron 3 of 3) protein_coding-intron (ENSMUSG00000071392.6, intron 3 of 20) 18913 ENSMUSG00000059554.12 ENSMUSG00000059554 ENSMUST00000052648 Ccdc28a protein_coding Interval_57089 chr15 6022147 6023094 + 0 NA Intergenic Intergenic -12341 ENSMUSG00000115093.1 ENSMUSG00000115093 ENSMUST00000227373 Gm8047 processed_pseudogene Interval_115952 chr4 106569230 106570327 + 0 NA intron (ENSMUSG00000034926.3, intron 2 of 8) protein_coding-intron (ENSMUSG00000034926.3, intron 2 of 8) 8740 ENSMUSG00000034926.3 ENSMUSG00000034926 ENSMUST00000047973 Dhcr24 protein_coding Interval_43954 chr13 38353260 38354085 + 0 NA intron (ENSMUSG00000039004.6, intron 1 of 6) protein_coding-intron (ENSMUSG00000039004.6, intron 1 of 6) 7519 ENSMUSG00000039004.6 ENSMUSG00000039004 ENSMUST00000223628 Bmp6 protein_coding Interval_157624 chr8 71791340 71792050 + 0 NA Intergenic Intergenic -10373 ENSMUSG00000110462.1 ENSMUSG00000110462 ENSMUST00000212427 Gm35572 lincRNA Interval_70892 chr17 15683446 15683738 + 0 NA Intergenic Intergenic 51804 ENSMUSG00000116924.1 ENSMUSG00000116924 ENSMUST00000231822 4933401D09Rik lincRNA Interval_34619 chr12 8059707 8060215 + 0 NA intron (ENSMUSG00000112694.1, intron 2 of 3) antisense-intron (ENSMUSG00000112694.1, intron 2 of 3) 82313 ENSMUSG00000020609.14 ENSMUSG00000020609 ENSMUST00000171239 Apob protein_coding Interval_93876 chr2 77864946 77865136 + 0 NA Intergenic Intergenic 16426 ENSMUSG00000087353.1 ENSMUSG00000087353 ENSMUST00000154480 Gm13727 processed_transcript Interval_134504 chr6 29198419 29199302 + 0 NA Intergenic Intergenic 17471 ENSMUSG00000003500.13 ENSMUSG00000003500 ENSMUST00000160749 Impdh1 protein_coding Interval_44984 chr13 51140416 51141299 + 0 NA intron (ENSMUSG00000021395.11, intron 2 of 3) protein_coding-intron (ENSMUSG00000021395.11, intron 4 of 5) 6538 ENSMUSG00000021395.11 ENSMUSG00000021395 ENSMUST00000223152 Spin1 protein_coding Interval_95146 chr2 104271843 104272464 + 0 NA intron (ENSMUSG00000087473.7, intron 2 of 2) protein_coding-intron (ENSMUSG00000068373.15, intron 1 of 20) 15481 ENSMUSG00000087473.7 ENSMUSG00000087473 ENSMUST00000150450 Gm13883 antisense Interval_83571 chr18 89893565 89893805 + 0 NA Intergenic Intergenic 50627 ENSMUSG00000098126.1 ENSMUSG00000098126 ENSMUST00000182270 Gm27037 processed_pseudogene Interval_157528 chr8 71213906 71215134 + 0 NA Intergenic Intergenic -9429 ENSMUSG00000110664.1 ENSMUSG00000110664 ENSMUST00000212311 Aprt-ps processed_pseudogene Interval_74431 chr17 50407461 50408068 + 0 NA Intergenic Intergenic 68512 ENSMUSG00000117222.1 ENSMUSG00000117222 ENSMUST00000233175 Gm49906 lincRNA Interval_105378 chr3 85734275 85734561 + 0 NA intron (ENSMUSG00000051000.17, intron 2 of 11) protein_coding-intron (ENSMUSG00000051000.17, intron 1 of 10) -60430 ENSMUSG00000051000.17 ENSMUSG00000051000 ENSMUST00000094148 Fam160a1 protein_coding Interval_47876 chr13 94076831 94077252 + 0 NA intron (ENSMUSG00000045312.12, intron 1 of 1) protein_coding-intron (ENSMUSG00000045312.12, intron 1 of 3) 23198 ENSMUSG00000114174.1 ENSMUSG00000114174 ENSMUST00000223240 Cycs-ps3 processed_pseudogene Interval_129176 chr5 118001953 118002618 + 0 NA intron (ENSMUSG00000032898.9, intron 11 of 11) protein_coding-intron (ENSMUSG00000032898.9, intron 11 of 11) 25085 ENSMUSG00000107058.1 ENSMUSG00000107058 ENSMUST00000202755 Gm42545 TEC Interval_155127 chr8 26836920 26837164 + 0 NA intron (ENSMUSG00000100335.2, intron 2 of 3) lincRNA-intron (ENSMUSG00000100335.2, intron 1 of 2) 45653 ENSMUSG00000100335.2 ENSMUSG00000100335 ENSMUST00000210263 2310008N11Rik lincRNA Interval_82502 chr18 74702949 74703231 + 0 NA intron (ENSMUSG00000025885.18, intron 21 of 39) protein_coding-intron (ENSMUSG00000025885.18, intron 21 of 38) -10529 ENSMUSG00000025885.18 ENSMUSG00000025885 ENSMUST00000154986 Myo5b protein_coding Interval_169794 chr9 101472367 101472988 + 0 NA Intergenic Intergenic -23324 ENSMUSG00000061486.7 ENSMUSG00000061486 ENSMUST00000075243 Gm5161 processed_pseudogene Interval_35095 chr12 17273389 17274517 + 0 NA exon (ENSMUSG00000020571.13, exon 3 of 13) protein_coding-exon (ENSMUSG00000020571.13, exon 3 of 13) 7358 ENSMUSG00000020571.13 ENSMUSG00000020571 ENSMUST00000163000 Pdia6 protein_coding Interval_97751 chr2 143806057 143807241 + 0 NA intron (ENSMUSG00000027419.9, intron 11 of 11) protein_coding-intron (ENSMUSG00000027419.9, intron 11 of 11) -10684 ENSMUSG00000087115.7 ENSMUSG00000087115 ENSMUST00000156362 Pcsk2os2 antisense Interval_65387 chr16 22065264 22066158 + 0 NA intron (ENSMUSG00000033581.17, intron 11 of 14) protein_coding-intron (ENSMUSG00000033581.17, intron 12 of 15) 12201 ENSMUSG00000068487.6 ENSMUSG00000068487 ENSMUST00000132879 Ndufa11b processed_pseudogene Interval_28797 chr11 78382004 78382954 + 0 NA intron (ENSMUSG00000002057.4, intron 1 of 8) protein_coding-intron (ENSMUSG00000002057.4, intron 1 of 8) 4079 ENSMUSG00000002057.4 ENSMUSG00000002057 ENSMUST00000108294 Foxn1 protein_coding Interval_118403 chr4 131159179 131159791 + 0 NA Intergenic Intergenic -79792 ENSMUSG00000088041.1 ENSMUSG00000088041 ENSMUST00000157416 Gm25261 snoRNA Interval_8538 chr1 141019207 141019790 + 0 NA Intergenic Intergenic 196171 ENSMUSG00000102500.1 ENSMUSG00000102500 ENSMUST00000194837 Gm37371 TEC Interval_174357 chrX 147553298 147554342 + 0 NA exon (ENSMUSG00000031290.14, exon 1 of 21) protein_coding-exon (ENSMUSG00000031290.14, exon 1 of 21) -41658 ENSMUSG00000031290.14 ENSMUSG00000031290 ENSMUST00000151730 Lrch2 protein_coding Interval_159534 chr8 95302378 95302647 + 0 NA intron (ENSMUSG00000031789.17, intron 2 of 10) protein_coding-intron (ENSMUSG00000031789.17, intron 2 of 12) -1846 ENSMUSG00000031789.17 ENSMUSG00000031789 ENSMUST00000212237 Cngb1 protein_coding Interval_24647 chr11 35629587 35629902 + 0 NA exon (ENSMUSG00000056427.10, exon 17 of 36) protein_coding-exon (ENSMUSG00000056427.10, exon 17 of 36) 12928 ENSMUSG00000065583.1 ENSMUSG00000065583 ENSMUST00000083649 Mir218-2 miRNA Interval_60587 chr15 75468752 75469114 + 0 NA Intergenic Intergenic -5613 ENSMUSG00000116365.1 ENSMUSG00000116365 ENSMUST00000229638 Gm34531 unprocessed_pseudogene Interval_120520 chr4 149120251 149120741 + 0 NA exon (ENSMUSG00000028974.13, exon 6 of 6) protein_coding-exon (ENSMUSG00000028974.13, exon 6 of 6) 6267 ENSMUSG00000028971.4 ENSMUSG00000028971 ENSMUST00000030815 Cort protein_coding Interval_7230 chr1 128047657 128048129 + 0 NA intron (ENSMUSG00000036086.16, intron 3 of 20) protein_coding-intron (ENSMUSG00000036086.16, intron 3 of 20) 9324 ENSMUSG00000058603.10 ENSMUSG00000058603 ENSMUST00000121497 Rpl28-ps1 processed_pseudogene Interval_146179 chr7 44548443 44549241 + 0 NA promoter-TSS (ENSMUSG00000038644.14) protein_coding-promoter-TSS (ENSMUSG00000038644.14) 3695 ENSMUSG00000109236.1 ENSMUSG00000109236 ENSMUST00000208368 Gm44833 processed_pseudogene Interval_160700 chr8 111692395 111693139 + 0 NA Intergenic Intergenic -1757 ENSMUSG00000031957.6 ENSMUSG00000031957 ENSMUST00000034435 Ctrb1 protein_coding Interval_102921 chr3 32817142 32818222 + 0 NA promoter-TSS (ENSMUSG00000056900.13) protein_coding-promoter-TSS (ENSMUSG00000056900.13) -29 ENSMUSG00000056900.13 ENSMUSG00000056900 ENSMUST00000156769 Usp13 protein_coding Interval_7650 chr1 132815047 132816393 + 0 NA Intergenic Intergenic -1372 ENSMUSG00000088911.1 ENSMUSG00000088911 ENSMUST00000158286 Gm22609 snoRNA Interval_55361 chr14 84757595 84758387 + 0 NA exon (ENSMUSG00000115743.1, exon 1 of 1) processed_pseudogene-exon (ENSMUSG00000115743.1, exon 1 of 1) 1092 ENSMUSG00000115743.1 ENSMUSG00000115743 ENSMUST00000227353 Gm7004 processed_pseudogene Interval_143371 chr7 6189170 6190273 + 0 NA exon (ENSMUSG00000044876.15, exon 4 of 4) protein_coding-exon (ENSMUSG00000044876.15, exon 4 of 4) 9746 ENSMUSG00000109165.1 ENSMUSG00000109165 ENSMUST00000208578 Gm45148 sense_intronic Interval_7740 chr1 133363181 133364272 + 0 NA exon (ENSMUSG00000070644.13, exon 1 of 8) protein_coding-exon (ENSMUSG00000070644.13, exon 1 of 8) -2038 ENSMUSG00000070644.13 ENSMUSG00000070644 ENSMUST00000131450 Etnk2 protein_coding Interval_76817 chr17 84268344 84268979 + 0 NA intron (ENSMUSG00000024251.10, intron 5 of 12) protein_coding-intron (ENSMUSG00000024251.10, intron 30 of 37) 19086 ENSMUSG00000065732.1 ENSMUSG00000065732 ENSMUST00000083798 Gm24492 snRNA Interval_60511 chr15 74549051 74549653 + 0 NA intron (ENSMUSG00000034730.17, intron 16 of 30) protein_coding-intron (ENSMUSG00000034730.17, intron 16 of 30) -14469 ENSMUSG00000093340.1 ENSMUSG00000093340 ENSMUST00000175599 Gm26117 miRNA Interval_141426 chr6 128200102 128201506 + 0 NA promoter-TSS (ENSMUSG00000056771.7) lincRNA-promoter-TSS (ENSMUSG00000056771.7) -181 ENSMUSG00000056771.7 ENSMUSG00000056771 ENSMUST00000071101 Gm10010 lincRNA Interval_6183 chr1 100231663 100232201 + 0 NA intron (ENSMUSG00000067028.11, intron 5 of 16) protein_coding-intron (ENSMUSG00000067028.11, intron 11 of 23) 21116 ENSMUSG00000087883.1 ENSMUSG00000087883 ENSMUST00000157258 Gm23602 snoRNA Interval_71990 chr17 27460184 27460374 + 0 NA intron (ENSMUSG00000063239.17, intron 2 of 9) protein_coding-intron (ENSMUSG00000063239.17, intron 3 of 10) 8610 ENSMUSG00000116568.1 ENSMUSG00000116568 ENSMUST00000231818 Gm49790 TEC Interval_131914 chr5 140758843 140760093 + 0 NA TTS (ENSMUSG00000000149.10) protein_coding-TTS (ENSMUSG00000000149.10) 35330 ENSMUSG00000050022.16 ENSMUSG00000050022 ENSMUST00000176035 Amz1 protein_coding Interval_103389 chr3 41140250 41141152 + 0 NA Intergenic Intergenic 31962 ENSMUSG00000105258.1 ENSMUSG00000105258 ENSMUST00000197878 Gm40038 lincRNA Interval_143435 chr7 6781804 6782274 + 0 NA intron (ENSMUSG00000051527.11, intron 2 of 7) protein_coding-intron (ENSMUSG00000051527.11, intron 2 of 7) -21548 ENSMUSG00000092815.1 ENSMUSG00000092815 ENSMUST00000175074 Mir3099 miRNA Interval_90809 chr2 32720692 32721203 + 0 NA promoter-TSS (ENSMUSG00000059013.12) protein_coding-promoter-TSS (ENSMUSG00000059013.12) -7975 ENSMUSG00000105841.1 ENSMUSG00000105841 ENSMUST00000198213 Mir3960 miRNA Interval_31342 chr11 100153954 100154804 + 0 NA Intergenic Intergenic -10680 ENSMUSG00000020911.14 ENSMUSG00000020911 ENSMUST00000125888 Krt19 protein_coding Interval_40564 chr12 105766271 105767220 + 0 NA exon (ENSMUSG00000041323.6, exon 15 of 18) protein_coding-exon (ENSMUSG00000041323.6, exon 15 of 18) 47889 ENSMUSG00000041323.6 ENSMUSG00000041323 ENSMUST00000220702 Ak7 protein_coding Interval_108941 chr3 133508903 133509182 + 0 NA intron (ENSMUSG00000040943.12, intron 2 of 2) protein_coding-intron (ENSMUSG00000040943.12, intron 2 of 10) -28360 ENSMUSG00000040943.12 ENSMUSG00000040943 ENSMUST00000195913 Tet2 protein_coding Interval_9943 chr1 164284240 164284559 + 0 NA intron (ENSMUSG00000026578.6, intron 4 of 5) protein_coding-intron (ENSMUSG00000026578.6, intron 4 of 5) 8814 ENSMUSG00000026578.6 ENSMUSG00000026578 ENSMUST00000027867 Ccdc181 protein_coding Interval_164093 chr9 31435520 31435788 + 0 NA promoter-TSS (ENSMUSG00000111548.1) processed_pseudogene-promoter-TSS (ENSMUSG00000111548.1) -947 ENSMUSG00000111548.1 ENSMUSG00000111548 ENSMUST00000213951 Gm8162 processed_pseudogene Interval_12427 chr1 193373605 193374855 + 0 NA Intergenic Intergenic -4005 ENSMUSG00000016179.11 ENSMUSG00000016179 ENSMUST00000165718 Camk1g protein_coding Interval_130309 chr5 125565830 125566314 + 0 NA intron (ENSMUSG00000070498.3, intron 1 of 8) protein_coding-intron (ENSMUSG00000070498.3, intron 1 of 8) 34298 ENSMUSG00000070498.3 ENSMUSG00000070498 ENSMUST00000184422 Tmem132b protein_coding Interval_54477 chr14 70123720 70124990 + 0 NA TTS (ENSMUSG00000022089.9) protein_coding-TTS (ENSMUSG00000022089.9) 16741 ENSMUSG00000033712.6 ENSMUSG00000033712 ENSMUST00000035612 Ccar2 protein_coding Interval_78703 chr18 18099013 18099410 + 0 NA promoter-TSS (ENSMUSG00000093274.1) miRNA-promoter-TSS (ENSMUSG00000093274.1) -349 ENSMUSG00000093274.1 ENSMUSG00000093274 ENSMUST00000175533 Gm26235 miRNA Interval_139240 chr6 97447044 97447378 + 0 NA intron (ENSMUSG00000030064.16, intron 2 of 7) protein_coding-intron (ENSMUSG00000030064.16, intron 1 of 22) -2539 ENSMUSG00000108185.1 ENSMUSG00000108185 ENSMUST00000204326 Gm19653 processed_pseudogene Interval_4326 chr1 72732905 72733403 + 0 NA Intergenic Intergenic 21840 ENSMUSG00000046330.10 ENSMUSG00000046330 ENSMUST00000211963 Rpl37a protein_coding Interval_75996 chr17 74264241 74265461 + 0 NA intron (ENSMUSG00000058704.9, intron 1 of 8) protein_coding-intron (ENSMUSG00000058704.9, intron 1 of 8) 30012 ENSMUSG00000058704.9 ENSMUSG00000058704 ENSMUST00000232861 Memo1 protein_coding Interval_165593 chr9 50029205 50029837 + 0 NA Intergenic Intergenic 74643 ENSMUSG00000111682.1 ENSMUSG00000111682 ENSMUST00000215094 Gm47543 lincRNA Interval_42012 chr13 6532819 6533455 + 0 NA Intergenic Intergenic 2542 ENSMUSG00000114195.1 ENSMUSG00000114195 ENSMUST00000221776 2900042G08Rik TEC Interval_126183 chr5 81627967 81628398 + 0 NA intron (ENSMUSG00000037605.16, intron 9 of 12) protein_coding-intron (ENSMUSG00000037605.16, intron 7 of 24) 92456 ENSMUSG00000107375.1 ENSMUSG00000107375 ENSMUST00000200696 Gm43084 TEC Interval_156108 chr8 44804099 44805368 + 0 NA Intergenic Intergenic 130426 ENSMUSG00000110409.1 ENSMUSG00000110409 ENSMUST00000211534 Gm9908 bidirectional_promoter_lncRNA Interval_6319 chr1 105844012 105845068 + 0 NA exon (ENSMUSG00000026321.7, exon 10 of 10) protein_coding-exon (ENSMUSG00000026321.7, exon 10 of 10) 46472 ENSMUSG00000102690.1 ENSMUSG00000102690 ENSMUST00000194221 Gm37779 TEC Interval_21918 chr11 5192022 5192637 + 0 NA exon (ENSMUSG00000020393.16, exon 9 of 9) protein_coding-exon (ENSMUSG00000020393.16, exon 9 of 9) -40089 ENSMUSG00000034164.17 ENSMUSG00000034164 ENSMUST00000138551 Emid1 protein_coding Interval_25451 chr11 48673125 48673897 + 0 NA Intergenic Intergenic -11198 ENSMUSG00000088425.1 ENSMUSG00000088425 ENSMUST00000157800 Gm24422 snoRNA Interval_98437 chr2 152349168 152350936 + 0 NA intron (ENSMUSG00000068062.3, intron 1 of 4) processed_transcript-intron (ENSMUSG00000068062.3, intron 1 of 4) -3563 ENSMUSG00000081434.3 ENSMUSG00000081434 ENSMUST00000121456 Gm14165 processed_pseudogene Interval_30378 chr11 93982170 93983257 + 0 NA Intergenic Intergenic -14192 ENSMUSG00000037601.11 ENSMUSG00000037601 ENSMUST00000107844 Nme1 protein_coding Interval_85169 chr19 23314949 23315462 + 0 NA intron (ENSMUSG00000033207.7, intron 10 of 12) protein_coding-intron (ENSMUSG00000033207.7, intron 11 of 13) 18876 ENSMUSG00000096249.1 ENSMUSG00000096249 ENSMUST00000104059 Gm24263 snRNA Interval_162479 chr8 129263052 129264047 + 0 NA promoter-TSS (ENSMUSG00000110605.1) lincRNA-promoter-TSS (ENSMUSG00000110605.1) -92 ENSMUSG00000110605.1 ENSMUSG00000110605 ENSMUST00000212145 Gm32856 lincRNA Interval_125886 chr5 75424292 75425079 + 0 NA Intergenic Intergenic -25313 ENSMUSG00000107386.1 ENSMUSG00000107386 ENSMUST00000202494 Gm42800 lincRNA Interval_45541 chr13 55730480 55731258 + 0 NA intron (ENSMUSG00000021496.12, intron 1 of 3) protein_coding-intron (ENSMUSG00000021496.12, intron 1 of 3) 3501 ENSMUSG00000021496.12 ENSMUSG00000021496 ENSMUST00000124968 Pcbd2 protein_coding Interval_47486 chr13 85220117 85220426 + 0 NA intron (ENSMUSG00000021549.14, intron 11 of 14) protein_coding-intron (ENSMUSG00000021549.14, intron 21 of 24) 8949 ENSMUSG00000021548.10 ENSMUSG00000021548 ENSMUST00000166932 Ccnh protein_coding Interval_152283 chr7 131370695 131372107 + 0 NA exon (ENSMUSG00000063179.13, exon 1 of 1) protein_coding-exon (ENSMUSG00000063179.13, exon 1 of 1) -8705 ENSMUSG00000040177.10 ENSMUSG00000040177 ENSMUST00000208509 2310057M21Rik protein_coding Interval_96354 chr2 121914356 121914786 + 0 NA intron (ENSMUSG00000060227.15, intron 7 of 7) protein_coding-intron (ENSMUSG00000060227.15, intron 8 of 9) 15764 ENSMUSG00000060227.15 ENSMUSG00000060227 ENSMUST00000136023 Casc4 protein_coding Interval_28242 chr11 74629006 74630311 + 0 NA intron (ENSMUSG00000069814.6, intron 1 of 3) protein_coding-intron (ENSMUSG00000069814.6, intron 1 of 3) 10053 ENSMUSG00000069814.6 ENSMUSG00000069814 ENSMUST00000100866 Ccdc92b protein_coding Interval_121225 chr4 154186222 154187903 + 0 NA intron (ENSMUSG00000057751.14, intron 3 of 36) protein_coding-intron (ENSMUSG00000057751.14, intron 3 of 36) -26896 ENSMUSG00000029030.14 ENSMUSG00000029030 ENSMUST00000133165 Tprgl protein_coding Interval_85595 chr19 28963594 28964759 + 0 NA promoter-TSS (ENSMUSG00000064202.15) protein_coding-promoter-TSS (ENSMUSG00000064202.15) 223 ENSMUSG00000040105.3 ENSMUSG00000040105 ENSMUST00000045674 Plpp6 protein_coding Interval_146216 chr7 44744934 44745418 + 0 NA promoter-TSS (ENSMUSG00000048012.19) protein_coding-promoter-TSS (ENSMUSG00000048012.19) -946 ENSMUSG00000048012.19 ENSMUSG00000048012 ENSMUST00000126366 Zfp473 protein_coding Interval_111433 chr4 21615957 21616656 + 0 NA Intergenic Intergenic -10074 ENSMUSG00000083654.1 ENSMUSG00000083654 ENSMUST00000118187 Gm11875 processed_pseudogene Interval_157229 chr8 68247799 68248445 + 0 NA Intergenic Intergenic -34185 ENSMUSG00000053886.4 ENSMUSG00000053886 ENSMUST00000212166 Sh2d4a protein_coding Interval_85090 chr19 22721347 22722409 + 0 NA intron (ENSMUSG00000052387.16, intron 5 of 24) protein_coding-intron (ENSMUSG00000052387.16, intron 5 of 26) -28727 ENSMUSG00000065507.3 ENSMUSG00000065507 ENSMUST00000083573 Mir204 miRNA Interval_73195 chr17 35515855 35517644 + 0 NA promoter-TSS (ENSMUSG00000040312.14) protein_coding-promoter-TSS (ENSMUSG00000040312.14) -202 ENSMUSG00000050410.15 ENSMUSG00000050410 ENSMUST00000162683 Tcf19 protein_coding Interval_36319 chr12 41158182 41159070 + 0 NA intron (ENSMUSG00000056899.10, intron 3 of 5) protein_coding-intron (ENSMUSG00000056899.10, intron 4 of 6) -113687 ENSMUSG00000113994.1 ENSMUSG00000113994 ENSMUST00000220956 Gm47375 antisense Interval_120794 chr4 150677050 150679487 + 0 NA intron (ENSMUSG00000085869.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000085869.1, intron 1 of 2) 524 ENSMUSG00000085869.1 ENSMUSG00000085869 ENSMUST00000149065 Gm16079 lincRNA Interval_5297 chr1 87320998 87321523 + 0 NA Intergenic Intergenic -5786 ENSMUSG00000048000.15 ENSMUSG00000048000 ENSMUST00000174482 Gigyf2 protein_coding Interval_29384 chr11 83556233 83556872 + 0 NA Intergenic Intergenic 20590 ENSMUSG00000019122.8 ENSMUSG00000019122 ENSMUST00000136131 Ccl9 protein_coding Interval_129023 chr5 116814999 116815210 + 0 NA intron (ENSMUSG00000106909.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000106909.1, intron 1 of 2) 3873 ENSMUSG00000107237.1 ENSMUSG00000107237 ENSMUST00000201443 Gm29926 lincRNA Interval_162227 chr8 126165560 126165823 + 0 NA intron (ENSMUSG00000057060.8, intron 1 of 5) protein_coding-intron (ENSMUSG00000057060.8, intron 1 of 5) 26696 ENSMUSG00000057060.8 ENSMUSG00000057060 ENSMUST00000108759 Slc35f3 protein_coding Interval_124012 chr5 37218970 37220659 + 0 NA intron (ENSMUSG00000117286.1, intron 8 of 8) protein_coding-intron (ENSMUSG00000117286.1, intron 7 of 7) -27471 ENSMUSG00000029121.16 ENSMUSG00000029121 ENSMUST00000200834 Crmp1 protein_coding Interval_87872 chr19 56744445 56745274 + 0 NA intron (ENSMUSG00000117696.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000117696.1, intron 2 of 2) 1905 ENSMUSG00000117696.1 ENSMUSG00000117696 ENSMUST00000237116 Gm50100 lincRNA Interval_34561 chr12 5142601 5143438 + 0 NA intron (ENSMUSG00000020627.10, intron 2 of 11) protein_coding-intron (ENSMUSG00000020627.10, intron 3 of 13) -75571 ENSMUSG00000112723.1 ENSMUSG00000112723 ENSMUST00000219035 Gm9110 processed_pseudogene Interval_19645 chr10 106915722 106915960 + 0 NA intron (ENSMUSG00000053825.15, intron 8 of 10) protein_coding-intron (ENSMUSG00000053825.15, intron 29 of 31) 22835 ENSMUSG00000053825.15 ENSMUSG00000053825 ENSMUST00000219024 Ppfia2 protein_coding Interval_139208 chr6 97208481 97208764 + 0 NA Intergenic Intergenic -2067 ENSMUSG00000035199.6 ENSMUSG00000035199 ENSMUST00000044681 Arl6ip5 protein_coding Interval_112910 chr4 45956969 45957585 + 0 NA Intergenic Intergenic 66974 ENSMUSG00000035539.14 ENSMUSG00000035539 ENSMUST00000151024 Ccdc180 protein_coding Interval_117643 chr4 125218575 125219511 + 0 NA Intergenic Intergenic -9554 ENSMUSG00000087010.1 ENSMUSG00000087010 ENSMUST00000130055 1700041M05Rik lincRNA Interval_68813 chr16 87249658 87250403 + 0 NA Intergenic Intergenic -104213 ENSMUSG00000044442.11 ENSMUSG00000044442 ENSMUST00000118115 N6amt1 protein_coding Interval_113398 chr4 54454674 54455501 + 0 NA Intergenic Intergenic -13265 ENSMUSG00000093183.2 ENSMUSG00000093183 ENSMUST00000175442 Gm25687 misc_RNA Interval_165589 chr9 49961401 49962859 + 0 NA Intergenic Intergenic 7252 ENSMUSG00000111682.1 ENSMUSG00000111682 ENSMUST00000215094 Gm47543 lincRNA Interval_68600 chr16 80523191 80523873 + 0 NA Intergenic Intergenic -161693 ENSMUSG00000089138.1 ENSMUSG00000089138 ENSMUST00000158513 Gm24773 snRNA Interval_22103 chr11 6360432 6361031 + 0 NA Intergenic Intergenic -35998 ENSMUSG00000041164.15 ENSMUSG00000041164 ENSMUST00000124588 Zmiz2 protein_coding Interval_99824 chr2 165142512 165142710 + 0 NA intron (ENSMUSG00000053166.14, intron 5 of 10) protein_coding-intron (ENSMUSG00000053166.14, intron 6 of 11) -16801 ENSMUSG00000086630.1 ENSMUSG00000086630 ENSMUST00000124728 Gm14397 antisense Interval_117916 chr4 127037835 127040953 + 0 NA intron (ENSMUSG00000085334.7, intron 2 of 2) processed_transcript-intron (ENSMUSG00000085334.7, intron 2 of 2) 5663 ENSMUSG00000085334.7 ENSMUSG00000085334 ENSMUST00000137457 Gm12940 processed_transcript Interval_159327 chr8 93583356 93584704 + 0 NA intron (ENSMUSG00000110534.1, intron 2 of 2) lincRNA-intron (ENSMUSG00000110534.1, intron 2 of 2) 44594 ENSMUSG00000110534.1 ENSMUSG00000110534 ENSMUST00000212213 Gm45708 lincRNA Interval_116594 chr4 115943806 115944325 + 0 NA Intergenic Intergenic -4139 ENSMUSG00000028707.15 ENSMUSG00000028707 ENSMUST00000084338 Dmbx1 protein_coding Interval_108028 chr3 120375935 120376237 + 0 NA Intergenic Intergenic -58097 ENSMUSG00000065684.1 ENSMUSG00000065684 ENSMUST00000083750 Gm23733 snRNA Interval_133656 chr6 8129871 8130663 + 0 NA intron (ENSMUSG00000068794.7, intron 11 of 34) protein_coding-intron (ENSMUSG00000068794.7, intron 11 of 34) 49907 ENSMUSG00000068794.7 ENSMUSG00000068794 ENSMUST00000213284 Col28a1 protein_coding Interval_7577 chr1 132291039 132293316 + 0 NA Intergenic Intergenic -6449 ENSMUSG00000042115.4 ENSMUSG00000042115 ENSMUST00000046071 Klhdc8a protein_coding Interval_21792 chr11 4372378 4372686 + 0 NA intron (ENSMUSG00000020419.11, intron 10 of 10) protein_coding-intron (ENSMUSG00000020419.11, intron 11 of 11) -48277 ENSMUSG00000065627.1 ENSMUSG00000065627 ENSMUST00000083693 Gm24803 snRNA Interval_64787 chr16 15736033 15736488 + 0 NA intron (ENSMUSG00000022672.8, intron 47 of 85) protein_coding-intron (ENSMUSG00000022672.8, intron 47 of 85) -14663 ENSMUSG00000116118.1 ENSMUSG00000116118 ENSMUST00000229449 Gm49511 processed_pseudogene Interval_9370 chr1 156626159 156627071 + 0 NA intron (ENSMUSG00000026596.13, intron 4 of 4) protein_coding-intron (ENSMUSG00000026596.13, intron 4 of 11) 10692 ENSMUSG00000026596.13 ENSMUSG00000026596 ENSMUST00000190749 Abl2 protein_coding Interval_40168 chr12 102241767 102242752 + 0 NA intron (ENSMUSG00000041771.14, intron 12 of 16) protein_coding-intron (ENSMUSG00000041771.14, intron 12 of 16) 11428 ENSMUSG00000105037.1 ENSMUSG00000105037 ENSMUST00000200458 Gm25203 snoRNA Interval_65222 chr16 20642128 20642699 + 0 NA intron (ENSMUSG00000022842.18, intron 3 of 4) protein_coding-intron (ENSMUSG00000022842.18, intron 12 of 18) 3207 ENSMUSG00000022842.18 ENSMUSG00000022842 ENSMUST00000231739 Ece2 protein_coding Interval_130728 chr5 130002221 130003511 + 0 NA promoter-TSS (ENSMUSG00000025534.17) protein_coding-promoter-TSS (ENSMUSG00000025534.17) -38 ENSMUSG00000025534.17 ENSMUSG00000025534 ENSMUST00000122994 Gusb protein_coding Interval_99833 chr2 165195360 165196194 + 0 NA intron (ENSMUSG00000053166.14, intron 1 of 11) protein_coding-intron (ENSMUSG00000053166.14, intron 1 of 11) -14318 ENSMUSG00000053166.14 ENSMUSG00000053166 ENSMUST00000138643 Cdh22 protein_coding Interval_102301 chr3 21472547 21473351 + 0 NA Intergenic Intergenic -130861 ENSMUSG00000106085.1 ENSMUSG00000106085 ENSMUST00000199468 Gm43675 unprocessed_pseudogene Interval_126228 chr5 83389483 83389867 + 0 NA Intergenic Intergenic -34719 ENSMUSG00000049537.10 ENSMUSG00000049537 ENSMUST00000146669 Tecrl protein_coding Interval_103840 chr3 53561469 53562371 + 0 NA intron (ENSMUSG00000037016.11, intron 6 of 23) protein_coding-intron (ENSMUSG00000037016.11, intron 6 of 23) -38900 ENSMUSG00000037016.11 ENSMUSG00000037016 ENSMUST00000199323 Frem2 protein_coding Interval_82011 chr18 67166332 67166875 + 0 NA intron (ENSMUSG00000024524.17, intron 4 of 5) protein_coding-intron (ENSMUSG00000024524.17, intron 4 of 11) 8388 ENSMUSG00000095972.1 ENSMUSG00000095972 ENSMUST00000180237 Gm23512 snRNA Interval_88319 chr2 3712169 3714219 + 0 NA promoter-TSS (ENSMUSG00000026655.15) protein_coding-promoter-TSS (ENSMUSG00000026655.15) 26832 ENSMUSG00000081070.1 ENSMUSG00000081070 ENSMUST00000120117 Gm13181 processed_pseudogene Interval_41740 chr12 118584139 118584705 + 0 NA Intergenic Intergenic -18255 ENSMUSG00000114034.1 ENSMUSG00000114034 ENSMUST00000222831 Gm9267 processed_pseudogene Interval_124718 chr5 53541791 53542903 + 0 NA intron (ENSMUSG00000039191.12, intron 1 of 6) protein_coding-intron (ENSMUSG00000039191.12, intron 1 of 6) 4975 ENSMUSG00000107111.1 ENSMUSG00000107111 ENSMUST00000202154 Gm40304 antisense Interval_89523 chr2 21773818 21774015 + 0 NA intron (ENSMUSG00000045967.11, intron 6 of 7) protein_coding-intron (ENSMUSG00000045967.11, intron 6 of 10) 21139 ENSMUSG00000077572.1 ENSMUSG00000077572 ENSMUST00000104384 Gm24886 snoRNA Interval_60577 chr15 75289160 75289505 + 0 NA Intergenic Intergenic 7767 ENSMUSG00000099467.1 ENSMUSG00000099467 ENSMUST00000189064 Gm28116 unprocessed_pseudogene Interval_100891 chr2 173186226 173187687 + 0 NA Intergenic Intergenic 31941 ENSMUSG00000027514.14 ENSMUSG00000027514 ENSMUST00000109116 Zbp1 protein_coding Interval_103720 chr3 52011397 52011672 + 0 NA intron (ENSMUSG00000061143.15, intron 1 of 4) protein_coding-intron (ENSMUSG00000061143.15, intron 1 of 4) -7509 ENSMUSG00000102423.1 ENSMUSG00000102423 ENSMUST00000192845 Gm37465 TEC Interval_165794 chr9 53212595 53212810 + 0 NA intron (ENSMUSG00000053289.8, intron 10 of 17) protein_coding-intron (ENSMUSG00000053289.8, intron 10 of 17) 35351 ENSMUSG00000053289.8 ENSMUSG00000053289 ENSMUST00000065630 Ddx10 protein_coding Interval_117839 chr4 126532734 126534618 + 0 NA promoter-TSS (ENSMUSG00000042500.11) protein_coding-promoter-TSS (ENSMUSG00000042500.11) -9004 ENSMUSG00000082888.1 ENSMUSG00000082888 ENSMUST00000119221 Gm12934 processed_pseudogene Interval_34331 chr12 3433848 3434034 + 0 NA intron (ENSMUSG00000037486.18, intron 1 of 11) protein_coding-intron (ENSMUSG00000037486.18, intron 1 of 10) -4574 ENSMUSG00000118499.1 ENSMUSG00000118499 ENSMUST00000239031 AC160138.1 processed_pseudogene Interval_16311 chr10 62128673 62129453 + 0 NA intron (ENSMUSG00000020083.13, intron 1 of 3) protein_coding-intron (ENSMUSG00000020083.13, intron 2 of 2) -4112 ENSMUSG00000044312.4 ENSMUSG00000044312 ENSMUST00000218216 Neurog3 protein_coding Interval_161012 chr8 116911996 116912340 + 0 NA intron (ENSMUSG00000014633.15, intron 1 of 4) protein_coding-intron (ENSMUSG00000014633.15, intron 1 of 2) -9579 ENSMUSG00000031756.5 ENSMUSG00000031756 ENSMUST00000212184 Cenpn protein_coding Interval_162606 chr9 6334745 6335433 + 0 NA intron (ENSMUSG00000032006.15, intron 4 of 5) protein_coding-intron (ENSMUSG00000032006.15, intron 4 of 6) -65243 ENSMUSG00000047619.5 ENSMUSG00000047619 ENSMUST00000051706 Ddi1 protein_coding Interval_149564 chr7 99599675 99600042 + 0 NA TTS (ENSMUSG00000018909.15) protein_coding-TTS (ENSMUSG00000018909.15) -26078 ENSMUSG00000097974.1 ENSMUSG00000097974 ENSMUST00000182342 Gm10605 lincRNA Interval_114993 chr4 88222384 88222562 + 0 NA intron (ENSMUSG00000038368.16, intron 11 of 43) protein_coding-intron (ENSMUSG00000038368.16, intron 11 of 43) 70777 ENSMUSG00000082597.1 ENSMUSG00000082597 ENSMUST00000117297 Gm12645 processed_pseudogene Interval_61345 chr15 80967879 80969026 + 0 NA intron (ENSMUSG00000022407.10, intron 3 of 3) protein_coding-intron (ENSMUSG00000022407.10, intron 12 of 12) -9437 ENSMUSG00000042303.19 ENSMUSG00000042303 ENSMUST00000156783 Sgsm3 protein_coding Interval_160642 chr8 111268449 111269765 + 0 NA Intergenic Intergenic -9891 ENSMUSG00000003316.14 ENSMUSG00000003316 ENSMUST00000003404 Glg1 protein_coding Interval_136588 chr6 56165269 56165638 + 0 NA intron (ENSMUSG00000004347.17, intron 9 of 19) protein_coding-intron (ENSMUSG00000004347.17, intron 7 of 18) 7578 ENSMUSG00000106152.1 ENSMUSG00000106152 ENSMUST00000198921 Gm44413 miRNA Interval_31474 chr11 100891095 100891351 + 0 NA promoter-TSS (ENSMUSG00000004040.16) protein_coding-promoter-TSS (ENSMUSG00000004040.16) 8084 ENSMUSG00000004040.16 ENSMUSG00000004040 ENSMUST00000130686 Stat3 protein_coding Interval_14687 chr10 39002610 39002909 + 0 NA intron (ENSMUSG00000019846.11, intron 1 of 9) protein_coding-intron (ENSMUSG00000019846.11, intron 1 of 37) 74470 ENSMUSG00000111431.1 ENSMUSG00000111431 ENSMUST00000213395 Gm17779 processed_pseudogene Interval_79905 chr18 35829552 35832581 + 0 NA promoter-TSS (ENSMUSG00000100320.1) antisense-promoter-TSS (ENSMUSG00000100320.1) 27 ENSMUSG00000100320.1 ENSMUSG00000100320 ENSMUST00000188160 Gm29417 antisense Interval_131188 chr5 135681129 135682246 + 0 NA intron (ENSMUSG00000005514.14, intron 1 of 6) protein_coding-intron (ENSMUSG00000005514.14, intron 1 of 6) 7102 ENSMUSG00000005514.14 ENSMUSG00000005514 ENSMUST00000132084 Por protein_coding Interval_79903 chr18 35814593 35816230 + 0 NA intron (ENSMUSG00000117841.1, intron 4 of 4) processed_transcript-intron (ENSMUSG00000117841.1, intron 4 of 4) -14482 ENSMUSG00000046668.9 ENSMUSG00000046668 ENSMUST00000235404 Cxxc5 protein_coding Interval_13978 chr10 25237244 25237984 + 0 NA intron (ENSMUSG00000039166.16, intron 6 of 7) protein_coding-intron (ENSMUSG00000039166.16, intron 6 of 7) -13886 ENSMUSG00000112371.1 ENSMUSG00000112371 ENSMUST00000219066 Gm7791 processed_pseudogene Interval_29500 chr11 84474300 84474510 + 0 NA intron (ENSMUSG00000018697.14, intron 5 of 8) protein_coding-intron (ENSMUSG00000018697.14, intron 5 of 12) 39117 ENSMUSG00000018697.14 ENSMUSG00000018697 ENSMUST00000148434 Aatf protein_coding Interval_26101 chr11 54201680 54202940 + 0 NA intron (ENSMUSG00000086209.1, intron 2 of 2) lincRNA-intron (ENSMUSG00000086209.1, intron 2 of 2) 2877 ENSMUSG00000060068.7 ENSMUSG00000060068 ENSMUST00000121368 Gm12222 processed_pseudogene Interval_100717 chr2 171985756 171987261 + 0 NA Intergenic Intergenic 2687 ENSMUSG00000085426.1 ENSMUSG00000085426 ENSMUST00000133525 Gm14272 lincRNA Interval_53295 chr14 55850057 55851284 + 0 NA Intergenic Intergenic -3340 ENSMUSG00000075592.10 ENSMUSG00000075592 ENSMUST00000100529 Nynrin protein_coding Interval_105098 chr3 81180167 81180415 + 0 NA intron (ENSMUSG00000028019.9, intron 4 of 5) protein_coding-intron (ENSMUSG00000028019.9, intron 3 of 5) -139854 ENSMUSG00000085106.1 ENSMUSG00000085106 ENSMUST00000146657 Gm16000 antisense Interval_11218 chr1 180255550 180256657 + 0 NA promoter-TSS (ENSMUSG00000102923.1) antisense-promoter-TSS (ENSMUSG00000102923.1) -326 ENSMUSG00000102923.1 ENSMUSG00000102923 ENSMUST00000192164 Gm31728 antisense Interval_163132 chr9 15530132 15530513 + 0 NA intron (ENSMUSG00000058173.12, intron 2 of 2) protein_coding-intron (ENSMUSG00000058173.12, intron 2 of 2) 36890 ENSMUSG00000058173.12 ENSMUSG00000058173 ENSMUST00000178999 Smco4 protein_coding Interval_103619 chr3 51223557 51225424 + 0 NA promoter-TSS (ENSMUSG00000023087.15) protein_coding-promoter-TSS (ENSMUSG00000023087.15) -7427 ENSMUSG00000103313.1 ENSMUSG00000103313 ENSMUST00000195382 Gm38357 TEC Interval_138566 chr6 89361209 89363302 + 0 NA intron (ENSMUSG00000030084.11, intron 1 of 31) protein_coding-intron (ENSMUSG00000030084.11, intron 1 of 31) 17115 ENSMUSG00000107570.1 ENSMUSG00000107570 ENSMUST00000204568 Gm44207 TEC Interval_155142 chr8 27008292 27008479 + 0 NA promoter-TSS (ENSMUSG00000109603.1) lincRNA-promoter-TSS (ENSMUSG00000109603.1) -82 ENSMUSG00000109603.1 ENSMUSG00000109603 ENSMUST00000209312 Gm32389 lincRNA Interval_86535 chr19 41529137 41529550 + 0 NA intron (ENSMUSG00000025019.17, intron 4 of 7) protein_coding-intron (ENSMUSG00000025019.17, intron 4 of 7) -46524 ENSMUSG00000025019.17 ENSMUSG00000025019 ENSMUST00000172371 Lcor protein_coding Interval_68204 chr16 68072968 68074316 + 0 NA Intergenic Intergenic 22256 ENSMUSG00000116711.1 ENSMUSG00000116711 ENSMUST00000231431 Gm18495 processed_pseudogene Interval_37654 chr12 70868691 70869209 + 0 NA intron (ENSMUSG00000048285.9, intron 2 of 11) protein_coding-intron (ENSMUSG00000048285.9, intron 2 of 13) 43201 ENSMUSG00000113584.1 ENSMUSG00000113584 ENSMUST00000221434 Gm46355 lincRNA Interval_170942 chr9 112734960 112736224 + 0 NA Intergenic Intergenic 213063 ENSMUSG00000096353.1 ENSMUSG00000096353 ENSMUST00000179604 Gm24957 snoRNA Interval_29250 chr11 82235394 82236031 + 0 NA intron (ENSMUSG00000020702.13, intron 7 of 10) protein_coding-intron (ENSMUSG00000020702.13, intron 7 of 10) 69978 ENSMUSG00000020702.13 ENSMUSG00000020702 ENSMUST00000021043 Ccl1 protein_coding Interval_153662 chr8 4366049 4366653 + 0 NA Intergenic Intergenic -3697 ENSMUSG00000108818.1 ENSMUSG00000108818 ENSMUST00000208836 Gm44869 processed_pseudogene Interval_117380 chr4 123342376 123343941 + 0 NA promoter-TSS (ENSMUSG00000032726.12) protein_coding-promoter-TSS (ENSMUSG00000032726.12) -355 ENSMUSG00000032726.12 ENSMUSG00000032726 ENSMUST00000040496 Bmp8a protein_coding Interval_76482 chr17 80499012 80500418 + 0 NA Intergenic Intergenic -19262 ENSMUSG00000024241.7 ENSMUSG00000024241 ENSMUST00000234841 Sos1 protein_coding Interval_21668 chr11 3577772 3578999 + 0 NA Intergenic Intergenic -39093 ENSMUSG00000020439.17 ENSMUSG00000020439 ENSMUST00000151804 Smtn protein_coding Interval_5650 chr1 90556560 90557381 + 0 NA Intergenic Intergenic 36474 ENSMUSG00000103292.1 ENSMUSG00000103292 ENSMUST00000192105 Gm35048 TEC Interval_129155 chr5 117892947 117893504 + 0 NA intron (ENSMUSG00000029361.18, intron 2 of 27) protein_coding-intron (ENSMUSG00000029361.18, intron 3 of 28) 20412 ENSMUSG00000104071.1 ENSMUSG00000104071 ENSMUST00000194276 Gm37028 TEC Interval_140300 chr6 116263705 116264621 + 0 NA promoter-TSS (ENSMUSG00000042213.17) protein_coding-promoter-TSS (ENSMUSG00000042213.17) -68 ENSMUSG00000107577.1 ENSMUSG00000107577 ENSMUST00000204364 Gm44103 TEC Interval_97553 chr2 139776504 139777116 + 0 NA Intergenic Intergenic -86487 ENSMUSG00000084207.1 ENSMUSG00000084207 ENSMUST00000120773 Gm14070 processed_pseudogene Interval_46855 chr13 72608634 72609782 + 0 NA Intergenic Intergenic 19356 ENSMUSG00000093587.3 ENSMUSG00000093587 ENSMUST00000177421 Gm20554 lincRNA Interval_132869 chr5 148407095 148407289 + 0 NA Intergenic Intergenic -7401 ENSMUSG00000041313.14 ENSMUSG00000041313 ENSMUST00000201348 Slc7a1 protein_coding Interval_40799 chr12 108493744 108494783 + 0 NA intron (ENSMUSG00000058070.14, intron 2 of 18) protein_coding-intron (ENSMUSG00000058070.14, intron 4 of 21) 22410 ENSMUSG00000058070.14 ENSMUSG00000058070 ENSMUST00000123035 Eml1 protein_coding Interval_124771 chr5 53809298 53810087 + 0 NA promoter-TSS (ENSMUSG00000039178.9) protein_coding-promoter-TSS (ENSMUSG00000039178.9) -81412 ENSMUSG00000039178.9 ENSMUSG00000039178 ENSMUST00000202880 Tbc1d19 protein_coding Interval_168236 chr9 78107881 78109200 + 0 NA promoter-TSS (ENSMUSG00000009828.15) protein_coding-promoter-TSS (ENSMUSG00000009828.15) 47 ENSMUSG00000001366.14 ENSMUSG00000001366 ENSMUST00000162625 Fbxo9 protein_coding Interval_142473 chr6 142706684 142707120 + 0 NA Intergenic Intergenic -4629 ENSMUSG00000030249.15 ENSMUSG00000030249 ENSMUST00000204870 Abcc9 protein_coding Interval_32910 chr11 113042585 113043303 + 0 NA TTS (ENSMUSG00000087259.7) lincRNA-TTS (ENSMUSG00000087259.7) 130133 ENSMUSG00000087259.7 ENSMUSG00000087259 ENSMUST00000150712 2610035D17Rik lincRNA Interval_107545 chr3 108401500 108402381 + 0 NA exon (ENSMUSG00000068740.13, exon 9 of 34) protein_coding-exon (ENSMUSG00000068740.13, exon 9 of 34) 649 ENSMUSG00000068740.13 ENSMUSG00000068740 ENSMUST00000147565 Celsr2 protein_coding Interval_85417 chr19 25622326 25623312 + 0 NA exon (ENSMUSG00000042372.5, exon 2 of 2) protein_coding-exon (ENSMUSG00000042372.5, exon 2 of 2) 12518 ENSMUSG00000042372.5 ENSMUSG00000042372 ENSMUST00000048935 Dmrt3 protein_coding Interval_73905 chr17 45413704 45414117 + 0 NA intron (ENSMUSG00000023932.9, intron 1 of 5) protein_coding-intron (ENSMUSG00000023932.9, intron 8 of 15) 19631 ENSMUSG00000023932.9 ENSMUSG00000023932 ENSMUST00000232910 Cdc5l protein_coding Interval_92393 chr2 59458834 59459542 + 0 NA Intergenic Intergenic -25481 ENSMUSG00000026989.5 ENSMUSG00000026989 ENSMUST00000144415 Dapl1 protein_coding Interval_91420 chr2 38668556 38669632 + 0 NA promoter-TSS (ENSMUSG00000083722.2) transcribed_unitary_pseudogene-promoter-TSS (ENSMUSG00000083722.2) -3134 ENSMUSG00000083722.2 ENSMUSG00000083722 ENSMUST00000152645 Adgrd2-ps transcribed_unitary_pseudogene Interval_95050 chr2 103479603 103480722 + 0 NA intron (ENSMUSG00000027187.10, intron 1 of 5) protein_coding-intron (ENSMUSG00000027187.10, intron 1 of 12) 4963 ENSMUSG00000027187.10 ENSMUSG00000027187 ENSMUST00000111168 Cat protein_coding Interval_81897 chr18 65682544 65683527 + 0 NA exon (ENSMUSG00000042439.13, exon 2 of 2) protein_coding-exon (ENSMUSG00000042439.13, exon 2 of 2) -15249 ENSMUSG00000046610.15 ENSMUSG00000046610 ENSMUST00000134343 Oacyl protein_coding Interval_40480 chr12 105107821 105108255 + 0 NA Intergenic Intergenic -27158 ENSMUSG00000113051.1 ENSMUSG00000113051 ENSMUST00000222354 Gm47672 processed_pseudogene Interval_134678 chr6 30303838 30304847 + 0 NA promoter-TSS (ENSMUSG00000084861.1) lincRNA-promoter-TSS (ENSMUSG00000084861.1) 186 ENSMUSG00000039159.16 ENSMUSG00000039159 ENSMUST00000148744 Ube2h protein_coding Interval_148424 chr7 81166926 81167836 + 0 NA intron (ENSMUSG00000025726.11, intron 14 of 17) protein_coding-intron (ENSMUSG00000025726.11, intron 14 of 17) -5637 ENSMUSG00000083820.1 ENSMUSG00000083820 ENSMUST00000118488 Ndufs6b processed_pseudogene Interval_15416 chr10 45811835 45812345 + 0 NA intron (ENSMUSG00000110874.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000110874.1, intron 1 of 2) 4771 ENSMUSG00000098409.1 ENSMUSG00000098409 ENSMUST00000183851 Gm27410 miRNA Interval_67665 chr16 55821713 55822639 + 0 NA promoter-TSS (ENSMUSG00000035356.17) protein_coding-promoter-TSS (ENSMUSG00000035356.17) -3661 ENSMUSG00000035356.17 ENSMUSG00000035356 ENSMUST00000139373 Nfkbiz protein_coding Interval_116989 chr4 118740744 118742230 + 0 NA Intergenic Intergenic 9312 ENSMUSG00000070820.3 ENSMUSG00000070820 ENSMUST00000094832 Olfr1339 protein_coding Interval_146683 chr7 49388209 49388961 + 0 NA intron (ENSMUSG00000052512.17, intron 3 of 4) protein_coding-intron (ENSMUSG00000052512.17, intron 2 of 5) 42491 ENSMUSG00000109051.1 ENSMUSG00000109051 ENSMUST00000208060 Gm44913 TEC Interval_167601 chr9 70954292 70954845 + 0 NA Intergenic Intergenic -2342 ENSMUSG00000032207.10 ENSMUSG00000032207 ENSMUST00000215814 Lipc protein_coding Interval_124912 chr5 60268528 60268714 + 0 NA Intergenic Intergenic 37138 ENSMUSG00000087034.4 ENSMUSG00000087034 ENSMUST00000117165 Cbfa2t2-ps1 processed_pseudogene Interval_51481 chr14 28057434 28058851 + 0 NA intron (ENSMUSG00000040640.11, intron 11 of 15) protein_coding-intron (ENSMUSG00000040640.11, intron 11 of 15) -181925 ENSMUSG00000109849.1 ENSMUSG00000109849 ENSMUST00000211470 Gm45645 antisense Interval_85586 chr19 28848164 28848436 + 0 NA intron (ENSMUSG00000024935.11, intron 1 of 1) protein_coding-intron (ENSMUSG00000024935.11, intron 1 of 11) 13165 ENSMUSG00000024935.11 ENSMUSG00000024935 ENSMUST00000162189 Slc1a1 protein_coding Interval_13707 chr10 21254843 21255278 + 0 NA Intergenic Intergenic -2946 ENSMUSG00000111200.1 ENSMUSG00000111200 ENSMUST00000217285 Gm33728 lincRNA Interval_82848 chr18 77466716 77467954 + 0 NA promoter-TSS (ENSMUSG00000025427.15) protein_coding-promoter-TSS (ENSMUSG00000025427.15) -187 ENSMUSG00000025427.15 ENSMUSG00000025427 ENSMUST00000182146 Rnf165 protein_coding Interval_22287 chr11 8545398 8546126 + 0 NA promoter-TSS (ENSMUSG00000020422.14) protein_coding-promoter-TSS (ENSMUSG00000020422.14) 118919 ENSMUSG00000020422.14 ENSMUSG00000020422 ENSMUST00000134823 Tns3 protein_coding Interval_12578 chr10 3531166 3531807 + 0 NA Intergenic Intergenic -8802 ENSMUSG00000019762.4 ENSMUSG00000019762 ENSMUST00000141745 Iyd protein_coding Interval_69442 chr16 93470107 93470595 + 0 NA Intergenic Intergenic -11546 ENSMUSG00000099968.7 ENSMUSG00000099968 ENSMUST00000231859 1700029J03Rik lincRNA Interval_113606 chr4 56953274 56954334 + 0 NA Intergenic Intergenic -6380 ENSMUSG00000055296.14 ENSMUSG00000055296 ENSMUST00000155625 Tmem245 protein_coding Interval_93709 chr2 76023677 76024220 + 0 NA intron (ENSMUSG00000075270.11, intron 17 of 19) protein_coding-intron (ENSMUSG00000075270.11, intron 17 of 19) -41981 ENSMUSG00000075271.4 ENSMUSG00000075271 ENSMUST00000099994 Ttc30a1 protein_coding Interval_172066 chrM 121 6486 + 0 NA promoter-TSS (ENSMUSG00000064342.1) Mt_tRNA-promoter-TSS (ENSMUSG00000064342.1) -403 ENSMUSG00000064342.1 ENSMUSG00000064342 ENSMUST00000082393 mt-Ti Mt_tRNA Interval_88527 chr2 5844444 5845714 + 0 NA promoter-TSS (ENSMUSG00000025817.12) protein_coding-promoter-TSS (ENSMUSG00000025817.12) -211 ENSMUSG00000025817.12 ENSMUSG00000025817 ENSMUST00000128604 Nudt5 protein_coding Interval_32428 chr11 107491801 107492059 + 0 NA exon (ENSMUSG00000020720.13, exon 6 of 11) protein_coding-exon (ENSMUSG00000020720.13, exon 6 of 11) 10014 ENSMUSG00000086442.1 ENSMUSG00000086442 ENSMUST00000138702 Gm11722 sense_intronic Interval_1260 chr1 18492432 18492641 + 0 NA Intergenic Intergenic -215892 ENSMUSG00000101306.1 ENSMUSG00000101306 ENSMUST00000189030 Gm5252 processed_pseudogene Interval_92696 chr2 62731835 62732151 + 0 NA intron (ENSMUSG00000059742.10, intron 12 of 15) protein_coding-intron (ENSMUSG00000059742.10, intron 12 of 15) 45795 ENSMUSG00000026893.4 ENSMUSG00000026893 ENSMUST00000148083 Gca protein_coding Interval_19587 chr10 104337132 104337404 + 0 NA Intergenic Intergenic 49999 ENSMUSG00000099264.1 ENSMUSG00000099264 ENSMUST00000183556 Mir6411 miRNA Interval_66607 chr16 35601306 35601690 + 0 NA intron (ENSMUSG00000052133.16, intron 1 of 5) protein_coding-intron (ENSMUSG00000052133.16, intron 1 of 21) -27942 ENSMUSG00000052192.5 ENSMUSG00000052192 ENSMUST00000143451 Gm5963 processed_pseudogene Interval_105739 chr3 89079551 89080011 + 0 NA TTS (ENSMUSG00000028053.13) protein_coding-TTS (ENSMUSG00000028053.13) 9960 ENSMUSG00000041263.14 ENSMUSG00000041263 ENSMUST00000196043 Rusc1 protein_coding Interval_60912 chr15 77813879 77816588 + 0 NA intron (ENSMUSG00000022443.17, intron 1 of 2) protein_coding-intron (ENSMUSG00000022443.17, intron 1 of 40) 25523 ENSMUSG00000084497.1 ENSMUSG00000084497 ENSMUST00000122548 Gm22107 snRNA Interval_152426 chr7 132988071 132988387 + 0 NA exon (ENSMUSG00000030970.16, exon 11 of 11) protein_coding-exon (ENSMUSG00000030970.16, exon 11 of 11) -4677 ENSMUSG00000085663.1 ENSMUSG00000085663 ENSMUST00000131085 Gm15718 antisense Interval_115716 chr4 102976172 102977109 + 0 NA intron (ENSMUSG00000085181.1, intron 3 of 3) antisense-intron (ENSMUSG00000085181.1, intron 3 of 3) -2051 ENSMUSG00000028523.14 ENSMUSG00000028523 ENSMUST00000139883 Tctex1d1 protein_coding Interval_134507 chr6 29215654 29216645 + 0 NA promoter-TSS (ENSMUSG00000003500.13) protein_coding-promoter-TSS (ENSMUSG00000003500.13) 182 ENSMUSG00000003500.13 ENSMUSG00000003500 ENSMUST00000160749 Impdh1 protein_coding Interval_121075 chr4 152647083 152648117 + 0 NA Intergenic Intergenic 30403 ENSMUSG00000083078.1 ENSMUSG00000083078 ENSMUST00000118685 Gm13172 processed_pseudogene Interval_134184 chr6 22425348 22425892 + 0 NA Intergenic Intergenic -81707 ENSMUSG00000029672.16 ENSMUSG00000029672 ENSMUST00000168965 Fam3c protein_coding Interval_11243 chr1 180406771 180407662 + 0 NA intron (ENSMUSG00000038855.10, intron 2 of 7) protein_coding-intron (ENSMUSG00000038855.10, intron 2 of 7) 30772 ENSMUSG00000103772.1 ENSMUSG00000103772 ENSMUST00000194945 Gm36933 TEC Interval_21494 chr10 128913327 128913873 + 0 NA TTS (ENSMUSG00000025350.15) protein_coding-TTS (ENSMUSG00000025350.15) 4255 ENSMUSG00000025351.14 ENSMUSG00000025351 ENSMUST00000218450 Cd63 protein_coding Interval_20986 chr10 123029989 123030570 + 0 NA promoter-TSS (ENSMUSG00000034602.15) protein_coding-promoter-TSS (ENSMUSG00000034602.15) 40 ENSMUSG00000034602.15 ENSMUSG00000034602 ENSMUST00000219203 Mon2 protein_coding Interval_113708 chr4 57780534 57783144 + 0 NA promoter-TSS (ENSMUSG00000038729.24) protein_coding-promoter-TSS (ENSMUSG00000038729.24) -17938 ENSMUSG00000073846.4 ENSMUSG00000073846 ENSMUST00000154462 Gm12526 processed_transcript Interval_67996 chr16 62852955 62855637 + 0 NA promoter-TSS (ENSMUSG00000022912.8) protein_coding-promoter-TSS (ENSMUSG00000022912.8) -7303 ENSMUSG00000022911.11 ENSMUSG00000022911 ENSMUST00000132902 Arl13b protein_coding Interval_116195 chr4 108607268 108607796 + 0 NA intron (ENSMUSG00000028587.18, intron 14 of 16) protein_coding-intron (ENSMUSG00000028587.18, intron 14 of 16) 12317 ENSMUSG00000084968.1 ENSMUSG00000084968 ENSMUST00000126668 Gm12743 processed_transcript Interval_30977 chr11 97546118 97547461 + 0 NA intron (ENSMUSG00000038453.17, intron 2 of 18) protein_coding-intron (ENSMUSG00000038453.17, intron 2 of 17) -24894 ENSMUSG00000087042.1 ENSMUSG00000087042 ENSMUST00000134289 Gm11611 sense_intronic Interval_49391 chr13 111636442 111636664 + 0 NA intron (ENSMUSG00000086649.1, intron 1 of 1) processed_transcript-intron (ENSMUSG00000086649.1, intron 1 of 1) -42942 ENSMUSG00000096842.1 ENSMUSG00000096842 ENSMUST00000179668 Gm10736 processed_pseudogene Interval_174784 chrX 166538606 166540513 + 0 NA intron (ENSMUSG00000000402.2, intron 7 of 11) protein_coding-intron (ENSMUSG00000000402.2, intron 7 of 11) -36162 ENSMUSG00000051224.13 ENSMUSG00000051224 ENSMUST00000112187 Tceanc protein_coding Interval_31015 chr11 97717627 97718231 + 0 NA exon (ENSMUSG00000018547.8, exon 10 of 10) protein_coding-exon (ENSMUSG00000018547.8, exon 10 of 10) -5722 ENSMUSG00000085145.1 ENSMUSG00000085145 ENSMUST00000137598 Gm11614 antisense Interval_55609 chr14 95650103 95650307 + 0 NA Intergenic Intergenic 79775 ENSMUSG00000115679.1 ENSMUSG00000115679 ENSMUST00000228033 Gm48995 processed_pseudogene Interval_94699 chr2 93474908 93475462 + 0 NA Intergenic Intergenic 6746 ENSMUSG00000075025.10 ENSMUSG00000075025 ENSMUST00000167654 Gm10804 lincRNA Interval_65741 chr16 26707010 26707208 + 0 NA intron (ENSMUSG00000022514.14, intron 8 of 11) protein_coding-intron (ENSMUSG00000022514.14, intron 8 of 10) -19933 ENSMUSG00000022514.14 ENSMUSG00000022514 ENSMUST00000174644 Il1rap protein_coding Interval_146274 chr7 45086321 45086577 + 0 NA intron (ENSMUSG00000019539.11, intron 2 of 3) protein_coding-intron (ENSMUSG00000019539.11, intron 4 of 6) 2158 ENSMUSG00000019539.11 ENSMUSG00000019539 ENSMUST00000210355 Rcn3 protein_coding Interval_125599 chr5 72464514 72465695 + 0 NA intron (ENSMUSG00000005220.10, intron 2 of 20) protein_coding-intron (ENSMUSG00000005220.10, intron 2 of 21) 32000 ENSMUSG00000093771.1 ENSMUSG00000093771 ENSMUST00000176972 AU023070 lincRNA Interval_63955 chr16 4783849 4784022 + 0 NA intron (ENSMUSG00000004071.13, intron 1 of 3) protein_coding-intron (ENSMUSG00000004071.13, intron 1 of 5) 6000 ENSMUSG00000004071.13 ENSMUSG00000004071 ENSMUST00000229452 Cdip1 protein_coding Interval_147028 chr7 58684209 58685628 + 0 NA intron (ENSMUSG00000025324.8, intron 1 of 20) protein_coding-intron (ENSMUSG00000025324.8, intron 1 of 20) 9497 ENSMUSG00000109393.1 ENSMUSG00000109393 ENSMUST00000207324 Gm44936 TEC Interval_82253 chr18 69660213 69661797 + 0 NA TTS (ENSMUSG00000053477.17) protein_coding-TTS (ENSMUSG00000053477.17) 109042 ENSMUSG00000088659.1 ENSMUSG00000088659 ENSMUST00000158034 Gm24845 rRNA Interval_49851 chr13 117198562 117198831 + 0 NA Intergenic Intergenic -9840 ENSMUSG00000021728.8 ENSMUSG00000021728 ENSMUST00000224455 Emb protein_coding Interval_27781 chr11 69964868 69967750 + 0 NA promoter-TSS (ENSMUSG00000018569.12) protein_coding-promoter-TSS (ENSMUSG00000018569.12) -609 ENSMUSG00000018569.12 ENSMUSG00000018569 ENSMUST00000151515 Cldn7 protein_coding Interval_77179 chr17 87133770 87135405 + 0 NA TTS (ENSMUSG00000037104.9) protein_coding-TTS (ENSMUSG00000037104.9) 26896 ENSMUSG00000037104.9 ENSMUSG00000037104 ENSMUST00000234421 Socs5 protein_coding Interval_4509 chr1 74697437 74698126 + 0 NA TTS (ENSMUSG00000033257.14) protein_coding-TTS (ENSMUSG00000033257.14) 8358 ENSMUSG00000033257.14 ENSMUSG00000033257 ENSMUST00000143790 Ttll4 protein_coding Interval_25588 chr11 49976255 49976541 + 0 NA TTS (ENSMUSG00000020374.16) protein_coding-TTS (ENSMUSG00000020374.16) 12613 ENSMUSG00000020374.16 ENSMUSG00000020374 ENSMUST00000109172 Rasgef1c protein_coding Interval_25825 chr11 51983672 51984923 + 0 NA Intergenic Intergenic 16405 ENSMUSG00000020392.8 ENSMUSG00000020392 ENSMUST00000127136 Cdkn2aipnl protein_coding Interval_118089 chr4 128904520 128906193 + 0 NA intron (ENSMUSG00000041000.8, intron 4 of 4) protein_coding-intron (ENSMUSG00000041000.8, intron 4 of 4) 21776 ENSMUSG00000041000.8 ENSMUSG00000041000 ENSMUST00000035667 Trim62 protein_coding Interval_6796 chr1 119525629 119527021 + 0 NA promoter-TSS (ENSMUSG00000098447.2) antisense-promoter-TSS (ENSMUSG00000098447.2) 34 ENSMUSG00000098447.2 ENSMUSG00000098447 ENSMUST00000185095 Gm27184 antisense Interval_159407 chr8 94385835 94387543 + 0 NA promoter-TSS (ENSMUSG00000031770.16) protein_coding-promoter-TSS (ENSMUSG00000031770.16) 283 ENSMUSG00000090105.2 ENSMUSG00000090105 ENSMUST00000161024 Gm15890 antisense Interval_79232 chr18 26486248 26486508 + 0 NA Intergenic Intergenic -9057 ENSMUSG00000088098.1 ENSMUSG00000088098 ENSMUST00000157473 Gm23674 snoRNA Interval_40773 chr12 108285033 108286596 + 0 NA Intergenic Intergenic -10389 ENSMUSG00000084883.2 ENSMUSG00000084883 ENSMUST00000136175 Ccdc85c protein_coding Interval_51684 chr14 31365269 31365584 + 0 NA promoter-TSS (ENSMUSG00000021893.14) protein_coding-promoter-TSS (ENSMUSG00000021893.14) -130 ENSMUSG00000021893.14 ENSMUSG00000021893 ENSMUST00000228237 Capn7 protein_coding Interval_125586 chr5 72219450 72219950 + 0 NA intron (ENSMUSG00000046808.17, intron 1 of 2) polymorphic_pseudogene-intron (ENSMUSG00000046808.17, intron 1 of 22) 16371 ENSMUSG00000046808.17 ENSMUSG00000046808 ENSMUST00000146393 Atp10d polymorphic_pseudogene Interval_155160 chr8 27134845 27135169 + 0 NA Intergenic Intergenic -7903 ENSMUSG00000097262.2 ENSMUSG00000097262 ENSMUST00000181424 4933416M07Rik antisense Interval_70627 chr17 12497723 12498619 + 0 NA intron (ENSMUSG00000023828.3, intron 1 of 9) protein_coding-intron (ENSMUSG00000023828.3, intron 1 of 10) 9245 ENSMUSG00000023828.3 ENSMUSG00000023828 ENSMUST00000024595 Slc22a3 protein_coding Interval_27949 chr11 71362047 71362294 + 0 NA Intergenic Intergenic -73612 ENSMUSG00000096455.1 ENSMUSG00000096455 ENSMUST00000104152 Gm23311 snoRNA Interval_89166 chr2 17801746 17801956 + 0 NA Intergenic Intergenic -3867 ENSMUSG00000081851.1 ENSMUSG00000081851 ENSMUST00000120245 Gm13323 processed_pseudogene Interval_32037 chr11 104607522 104608824 + 0 NA intron (ENSMUSG00000020689.4, intron 1 of 14) protein_coding-intron (ENSMUSG00000020689.4, intron 1 of 14) 26134 ENSMUSG00000061086.12 ENSMUSG00000061086 ENSMUST00000136244 Myl4 protein_coding Interval_111056 chr4 11535596 11535795 + 0 NA intron (ENSMUSG00000040720.15, intron 18 of 24) protein_coding-intron (ENSMUSG00000040720.15, intron 17 of 23) -32856 ENSMUSG00000086625.1 ENSMUSG00000086625 ENSMUST00000141538 Gm11831 antisense Interval_47612 chr13 90089016 90090233 + 0 NA promoter-TSS (ENSMUSG00000012422.14) protein_coding-promoter-TSS (ENSMUSG00000012422.14) 501 ENSMUSG00000012422.14 ENSMUSG00000012422 ENSMUST00000012566 Tmem167 protein_coding Interval_164412 chr9 36820514 36822255 + 0 NA promoter-TSS (ENSMUSG00000032118.16) protein_coding-promoter-TSS (ENSMUSG00000032118.16) -7510 ENSMUSG00000098985.1 ENSMUSG00000098985 ENSMUST00000184633 Gm27219 processed_pseudogene Interval_4535 chr1 74851153 74851973 + 0 NA intron (ENSMUSG00000089964.1, intron 1 of 3) processed_transcript-intron (ENSMUSG00000089964.1, intron 1 of 3) 668 ENSMUSG00000089964.1 ENSMUSG00000089964 ENSMUST00000159627 Gm16582 processed_transcript Interval_28087 chr11 72737181 72738007 + 0 NA intron (ENSMUSG00000020790.14, intron 7 of 24) protein_coding-intron (ENSMUSG00000020790.14, intron 5 of 22) 47588 ENSMUSG00000020790.14 ENSMUSG00000020790 ENSMUST00000132889 Ankfy1 protein_coding Interval_94849 chr2 96796688 96796991 + 0 NA intron (ENSMUSG00000050587.14, intron 2 of 7) protein_coding-intron (ENSMUSG00000050587.14, intron 2 of 6) -202785 ENSMUSG00000091288.1 ENSMUSG00000091288 ENSMUST00000171924 Gm17075 processed_pseudogene Interval_42063 chr13 7162199 7162551 + 0 NA intron (ENSMUSG00000113241.1, intron 1 of 3) lincRNA-intron (ENSMUSG00000113241.1, intron 2 of 4) 1960 ENSMUSG00000113241.1 ENSMUSG00000113241 ENSMUST00000221816 Gm40663 lincRNA Interval_146373 chr7 45574717 45574909 + 0 NA promoter-TSS (ENSMUSG00000030826.19) protein_coding-promoter-TSS (ENSMUSG00000030826.19) 325 ENSMUSG00000109644.1 ENSMUSG00000109644 ENSMUST00000210965 0610005C13Rik antisense Interval_115541 chr4 100498169 100499633 + 0 NA intron (ENSMUSG00000069733.11, intron 5 of 9) protein_coding-intron (ENSMUSG00000069733.11, intron 4 of 8) 20052 ENSMUSG00000069733.11 ENSMUSG00000069733 ENSMUST00000092730 Ube2u protein_coding Interval_9202 chr1 155039883 155040970 + 0 NA intron (ENSMUSG00000101880.1, intron 1 of 3) lincRNA-intron (ENSMUSG00000101880.1, intron 1 of 3) 8687 ENSMUSG00000101433.1 ENSMUSG00000101433 ENSMUST00000191584 Gm29441 processed_pseudogene Interval_42773 chr13 19356294 19357155 + 0 NA TTS (ENSMUSG00000003062.13) protein_coding-TTS (ENSMUSG00000003062.13) 12166 ENSMUSG00000076757.9 ENSMUSG00000076757 ENSMUST00000179181 Trgc4 TR_C_gene Interval_125636 chr5 72932259 72934011 + 0 NA intron (ENSMUSG00000036087.18, intron 2 of 5) protein_coding-intron (ENSMUSG00000036087.18, intron 1 of 8) -18193 ENSMUSG00000052154.4 ENSMUSG00000052154 ENSMUST00000063874 Gm9870 TEC Interval_85995 chr19 34819917 34820152 + 0 NA TTS (ENSMUSG00000065594.1) miRNA-TTS (ENSMUSG00000065594.1) 739 ENSMUSG00000065594.1 ENSMUSG00000065594 ENSMUST00000083660 Mir107 miRNA Interval_145227 chr7 30787692 30788146 + 0 NA promoter-TSS (ENSMUSG00000074199.7) protein_coding-promoter-TSS (ENSMUSG00000074199.7) 14 ENSMUSG00000074199.7 ENSMUSG00000074199 ENSMUST00000188036 Krtdap protein_coding Interval_83365 chr18 84597734 84599058 + 0 NA Intergenic Intergenic -27349 ENSMUSG00000117676.1 ENSMUSG00000117676 ENSMUST00000236074 Gm50314 antisense Interval_25099 chr11 43915852 43916389 + 0 NA Intergenic Intergenic -42969 ENSMUSG00000087172.1 ENSMUSG00000087172 ENSMUST00000148504 Gm12153 lincRNA Interval_83826 chr19 4914938 4916881 + 0 NA promoter-TSS (ENSMUSG00000063904.4) protein_coding-promoter-TSS (ENSMUSG00000063904.4) 5483 ENSMUSG00000063904.4 ENSMUSG00000063904 ENSMUST00000236758 Dpp3 protein_coding Interval_123606 chr5 33740373 33740592 + 0 NA exon (ENSMUSG00000005299.6, exon 14 of 14) protein_coding-exon (ENSMUSG00000005299.6, exon 14 of 14) 7230 ENSMUSG00000054252.18 ENSMUSG00000054252 ENSMUST00000142860 Fgfr3 protein_coding Interval_42283 chr13 11746848 11747062 + 0 NA TTS (ENSMUSG00000021313.16) protein_coding-TTS (ENSMUSG00000021313.16) 74779 ENSMUSG00000113269.1 ENSMUSG00000113269 ENSMUST00000221204 Gm47494 TEC Interval_17513 chr10 77433802 77435050 + 0 NA Intergenic Intergenic -16209 ENSMUSG00000020262.15 ENSMUSG00000020262 ENSMUST00000155117 Adarb1 protein_coding Interval_4700 chr1 77441494 77442308 + 0 NA intron (ENSMUSG00000026235.14, intron 1 of 2) protein_coding-intron (ENSMUSG00000026235.14, intron 4 of 17) 54867 ENSMUSG00000099141.1 ENSMUSG00000099141 ENSMUST00000184495 Mir6352 miRNA Interval_38621 chr12 80613120 80613387 + 0 NA promoter-TSS (ENSMUSG00000112606.1) processed_pseudogene-promoter-TSS (ENSMUSG00000112606.1) -43 ENSMUSG00000112606.1 ENSMUSG00000112606 ENSMUST00000218548 Gm46364 processed_pseudogene Interval_78120 chr18 8523565 8524703 + 0 NA Intergenic Intergenic 109005 ENSMUSG00000117484.1 ENSMUSG00000117484 ENSMUST00000234117 Gm5500 processed_pseudogene Interval_146352 chr7 45471042 45471319 + 0 NA exon (ENSMUSG00000011382.8, exon 7 of 7) protein_coding-exon (ENSMUSG00000011382.8, exon 7 of 7) -5136 ENSMUSG00000003873.11 ENSMUSG00000003873 ENSMUST00000210019 Bax protein_coding Interval_91147 chr2 35460664 35462587 + 0 NA promoter-TSS (ENSMUSG00000035778.17) protein_coding-promoter-TSS (ENSMUSG00000035778.17) 22280 ENSMUSG00000081841.1 ENSMUSG00000081841 ENSMUST00000119445 Gm13444 processed_pseudogene Interval_32397 chr11 107337704 107339584 + 0 NA intron (ENSMUSG00000086298.1, intron 1 of 1) protein_coding-intron (ENSMUSG00000040430.18, intron 1 of 9) 594 ENSMUSG00000086298.1 ENSMUSG00000086298 ENSMUST00000154414 Gm11716 antisense Interval_115467 chr4 99193670 99194595 + 0 NA promoter-TSS (ENSMUSG00000028550.15) protein_coding-promoter-TSS (ENSMUSG00000028550.15) -15 ENSMUSG00000028550.15 ENSMUSG00000028550 ENSMUST00000152121 Atg4c protein_coding Interval_105510 chr3 87152543 87153723 + 0 NA intron (ENSMUSG00000041734.15, intron 1 of 15) protein_coding-intron (ENSMUSG00000041734.15, intron 1 of 13) -4560 ENSMUSG00000102893.1 ENSMUSG00000102893 ENSMUST00000192571 Gm37855 lincRNA Interval_144161 chr7 19728693 19729424 + 0 NA intron (ENSMUSG00000062300.14, intron 5 of 5) protein_coding-intron (ENSMUSG00000062300.14, intron 5 of 8) 14042 ENSMUSG00000092381.1 ENSMUSG00000092381 ENSMUST00000172483 Gm20512 antisense Interval_446 chr1 5369787 5370028 + 0 NA Intergenic Intergenic -33640 ENSMUSG00000102907.1 ENSMUSG00000102907 ENSMUST00000194850 Gm38264 TEC Interval_28641 chr11 77497319 77498921 + 0 NA promoter-TSS (ENSMUSG00000011877.13) protein_coding-promoter-TSS (ENSMUSG00000011877.13) -971 ENSMUSG00000011877.13 ENSMUSG00000011877 ENSMUST00000128796 Git1 protein_coding Interval_29881 chr11 87489131 87489350 + 0 NA intron (ENSMUSG00000010342.16, intron 5 of 30) protein_coding-intron (ENSMUSG00000010342.16, intron 5 of 30) 17872 ENSMUSG00000105115.1 ENSMUSG00000105115 ENSMUST00000196353 Rnu3b2 snoRNA Interval_99977 chr2 166208750 166209376 + 0 NA promoter-TSS (ENSMUSG00000085046.1) lincRNA-promoter-TSS (ENSMUSG00000085046.1) -436 ENSMUSG00000085046.1 ENSMUSG00000085046 ENSMUST00000129407 Gm11467 lincRNA Interval_3252 chr1 55185627 55185944 + 0 NA intron (ENSMUSG00000025978.14, intron 6 of 7) protein_coding-intron (ENSMUSG00000025978.14, intron 7 of 8) -24732 ENSMUSG00000061863.6 ENSMUSG00000061863 ENSMUST00000161440 Gm6822 processed_pseudogene Interval_27646 chr11 69265232 69267782 + 0 NA Intergenic Intergenic 25908 ENSMUSG00000089438.1 ENSMUSG00000089438 ENSMUST00000158813 Gm23194 snRNA Interval_92995 chr2 69332575 69332965 + 0 NA intron (ENSMUSG00000027048.15, intron 1 of 28) protein_coding-intron (ENSMUSG00000027048.15, intron 1 of 28) 3031 ENSMUSG00000083592.1 ENSMUSG00000083592 ENSMUST00000117306 Gm13614 processed_pseudogene Interval_11326 chr1 180965977 180967012 + 0 NA exon (ENSMUSG00000026519.16, exon 17 of 23) protein_coding-exon (ENSMUSG00000026519.16, exon 17 of 23) -8345 ENSMUSG00000085563.2 ENSMUSG00000085563 ENSMUST00000128545 2210411M09Rik antisense Interval_97976 chr2 146335225 146335450 + 0 NA intron (ENSMUSG00000037110.20, intron 35 of 41) protein_coding-intron (ENSMUSG00000037110.20, intron 34 of 40) 29790 ENSMUSG00000042938.8 ENSMUSG00000042938 ENSMUST00000122417 Gm14117 processed_pseudogene Interval_63070 chr15 98944617 98946335 + 0 NA intron (ENSMUSG00000116358.1, intron 3 of 3) protein_coding-intron (ENSMUSG00000116358.1, intron 3 of 3) 2926 ENSMUSG00000116494.1 ENSMUSG00000116494 ENSMUST00000229079 Gm49449 TEC Interval_47167 chr13 76886427 76886750 + 0 NA intron (ENSMUSG00000021596.16, intron 15 of 20) protein_coding-intron (ENSMUSG00000021596.16, intron 15 of 20) -48575 ENSMUSG00000090119.1 ENSMUSG00000090119 ENSMUST00000160999 Gm8185 processed_pseudogene Interval_51546 chr14 30031301 30032165 + 0 NA exon (ENSMUSG00000015970.19, exon 2 of 8) protein_coding-exon (ENSMUSG00000015970.19, exon 2 of 8) -3382 ENSMUSG00000114705.1 ENSMUSG00000114705 ENSMUST00000225370 Gm18760 processed_pseudogene Interval_7283 chr1 128416630 128417900 + 0 NA promoter-TSS (ENSMUSG00000026356.15) protein_coding-promoter-TSS (ENSMUSG00000026356.15) -37778 ENSMUSG00000026356.15 ENSMUSG00000026356 ENSMUST00000064309 Dars protein_coding Interval_161275 chr8 119440185 119441476 + 0 NA intron (ENSMUSG00000074063.10, intron 1 of 3) protein_coding-intron (ENSMUSG00000074063.10, intron 1 of 5) 3681 ENSMUSG00000074063.10 ENSMUSG00000074063 ENSMUST00000144381 Osgin1 protein_coding Interval_146083 chr7 43748245 43748480 + 0 NA intron (ENSMUSG00000097178.7, intron 1 of 1) processed_transcript-intron (ENSMUSG00000097178.7, intron 4 of 6) 10222 ENSMUSG00000097178.7 ENSMUSG00000097178 ENSMUST00000205527 2310002F09Rik processed_transcript Interval_156955 chr8 62284199 62285117 + 0 NA Intergenic Intergenic -90446 ENSMUSG00000110252.1 ENSMUSG00000110252 ENSMUST00000211074 Gm2961 processed_pseudogene Interval_136063 chr6 50403693 50405242 + 0 NA intron (ENSMUSG00000029822.15, intron 1 of 5) protein_coding-intron (ENSMUSG00000029822.15, intron 2 of 21) -52510 ENSMUSG00000029822.15 ENSMUSG00000029822 ENSMUST00000154333 Osbpl3 protein_coding Interval_22942 chr11 17721910 17723257 + 0 NA Intergenic Intergenic -83400 ENSMUSG00000082411.1 ENSMUSG00000082411 ENSMUST00000119079 Gm12016 processed_pseudogene Interval_83951 chr19 5777457 5779033 + 0 NA Intergenic Intergenic -6893 ENSMUSG00000024941.9 ENSMUSG00000024941 ENSMUST00000237133 Scyl1 protein_coding Interval_69357 chr16 92435213 92435912 + 0 NA intron (ENSMUSG00000022951.16, intron 1 of 3) protein_coding-intron (ENSMUSG00000022951.16, intron 1 of 3) -21915 ENSMUSG00000116964.1 ENSMUSG00000116964 ENSMUST00000231968 Gm46555 antisense Interval_138399 chr6 87866177 87866906 + 0 NA Intergenic Intergenic 15332 ENSMUSG00000107798.1 ENSMUSG00000107798 ENSMUST00000204964 Gm44064 TEC Interval_162708 chr9 7934499 7934804 + 0 NA exon (ENSMUSG00000053110.13, exon 9 of 9) protein_coding-exon (ENSMUSG00000053110.13, exon 9 of 9) -31187 ENSMUSG00000092185.1 ENSMUSG00000092185 ENSMUST00000174760 Gm20416 processed_transcript Interval_115584 chr4 101082461 101083091 + 0 NA intron (ENSMUSG00000035275.14, intron 2 of 4) protein_coding-intron (ENSMUSG00000035275.14, intron 1 of 11) 13297 ENSMUSG00000035275.14 ENSMUSG00000035275 ENSMUST00000148148 Raver2 protein_coding Interval_122645 chr5 24424926 24425769 + 0 NA promoter-TSS (ENSMUSG00000028962.14) protein_coding-promoter-TSS (ENSMUSG00000028962.14) -1862 ENSMUSG00000028969.10 ENSMUSG00000028969 ENSMUST00000197619 Cdk5 protein_coding Interval_58023 chr15 26396328 26396578 + 0 NA intron (ENSMUSG00000022269.13, intron 1 of 1) protein_coding-intron (ENSMUSG00000022269.13, intron 3 of 3) 8734 ENSMUSG00000022269.13 ENSMUSG00000022269 ENSMUST00000155819 Marchf11 protein_coding Interval_102945 chr3 33082841 33083361 + 0 NA promoter-TSS (ENSMUSG00000027674.16) protein_coding-promoter-TSS (ENSMUSG00000027674.16) -6745 ENSMUSG00000102498.1 ENSMUSG00000102498 ENSMUST00000193649 Gm19445 TEC Interval_118624 chr4 132837147 132837524 + 0 NA intron (ENSMUSG00000028882.13, intron 2 of 2) protein_coding-intron (ENSMUSG00000028882.13, intron 2 of 6) 1212 ENSMUSG00000088990.1 ENSMUSG00000088990 ENSMUST00000158365 Gm22767 scaRNA Interval_41560 chr12 116291692 116292621 + 0 NA intron (ENSMUSG00000021171.8, intron 1 of 22) protein_coding-intron (ENSMUSG00000021171.8, intron 1 of 21) -11925 ENSMUSG00000113527.1 ENSMUSG00000113527 ENSMUST00000222938 Gm48079 lincRNA Interval_131948 chr5 140993150 140993346 + 0 NA intron (ENSMUSG00000036526.8, intron 1 of 2) protein_coding-intron (ENSMUSG00000036526.8, intron 1 of 24) 7223 ENSMUSG00000036526.8 ENSMUSG00000036526 ENSMUST00000199091 Card11 protein_coding Interval_29084 chr11 80218599 80218929 + 0 NA intron (ENSMUSG00000017686.17, intron 1 of 14) protein_coding-intron (ENSMUSG00000017686.17, intron 1 of 19) 34541 ENSMUSG00000020707.6 ENSMUSG00000020707 ENSMUST00000134909 Rnf135 protein_coding Interval_143573 chr7 12909190 12911074 + 0 NA Intergenic Intergenic -12186 ENSMUSG00000012848.15 ENSMUSG00000012848 ENSMUST00000137329 Rps5 protein_coding Interval_51946 chr14 34167814 34168314 + 0 NA Intergenic Intergenic -2591 ENSMUSG00000078126.4 ENSMUSG00000078126 ENSMUST00000104925 Rpl23a-ps3 processed_pseudogene Interval_40847 chr12 108818547 108820479 + 0 NA exon (ENSMUSG00000021264.12, exon 5 of 5) protein_coding-exon (ENSMUSG00000021264.12, exon 5 of 5) 13274 ENSMUSG00000021264.12 ENSMUSG00000021264 ENSMUST00000126912 Yy1 protein_coding Interval_24731 chr11 36333854 36334575 + 0 NA intron (ENSMUSG00000049336.16, intron 3 of 28) protein_coding-intron (ENSMUSG00000049336.16, intron 3 of 28) 56173 ENSMUSG00000086375.1 ENSMUSG00000086375 ENSMUST00000123278 Gm12127 antisense Interval_125517 chr5 67866044 67866399 + 0 NA intron (ENSMUSG00000087261.2, intron 1 of 3) antisense-intron (ENSMUSG00000087261.2, intron 1 of 2) -6661 ENSMUSG00000107206.1 ENSMUSG00000107206 ENSMUST00000200723 Gm42736 TEC Interval_51723 chr14 31650166 31650625 + 0 NA intron (ENSMUSG00000021900.10, intron 1 of 2) protein_coding-intron (ENSMUSG00000021900.10, intron 1 of 3) 9367 ENSMUSG00000021900.10 ENSMUSG00000021900 ENSMUST00000090147 Btd protein_coding Interval_73482 chr17 37869627 37870132 + 0 NA Intergenic Intergenic 9072 ENSMUSG00000092458.1 ENSMUSG00000092458 ENSMUST00000173594 Gm18737 processed_pseudogene Interval_9642 chr1 160670267 160671118 + 0 NA intron (ENSMUSG00000026721.16, intron 11 of 20) protein_coding-intron (ENSMUSG00000026721.16, intron 11 of 20) -20390 ENSMUSG00000102172.1 ENSMUSG00000102172 ENSMUST00000194571 Gm37873 TEC Interval_132030 chr5 142391856 142392077 + 0 NA Intergenic Intergenic -9531 ENSMUSG00000056493.9 ENSMUSG00000056493 ENSMUST00000072837 Foxk1 protein_coding Interval_1642 chr1 30740691 30741346 + 0 NA Intergenic Intergenic -21056 ENSMUSG00000053185.2 ENSMUSG00000053185 ENSMUST00000065469 Gm9898 lincRNA Interval_122562 chr5 23817509 23817722 + 0 NA intron (ENSMUSG00000028999.15, intron 13 of 13) protein_coding-intron (ENSMUSG00000028999.15, intron 14 of 14) 5963 ENSMUSG00000118636.1 ENSMUSG00000118636 ENSMUST00000239171 AC117663.3 transcribed_unitary_pseudogene Interval_171108 chr9 114573434 114573815 + 0 NA Intergenic Intergenic -9255 ENSMUSG00000079259.2 ENSMUSG00000079259 ENSMUST00000111816 Trim71 protein_coding Interval_124742 chr5 53636908 53637549 + 0 NA intron (ENSMUSG00000039191.12, intron 4 of 6) protein_coding-intron (ENSMUSG00000039191.12, intron 3 of 10) -1404 ENSMUSG00000039191.12 ENSMUSG00000039191 ENSMUST00000202092 Rbpj protein_coding Interval_102253 chr3 20013979 20014179 + 0 NA promoter-TSS (ENSMUSG00000027615.14) protein_coding-promoter-TSS (ENSMUSG00000027615.14) 21215 ENSMUSG00000027615.14 ENSMUSG00000027615 ENSMUST00000133094 Hps3 protein_coding Interval_161179 chr8 118237022 118237269 + 0 NA Intergenic Intergenic 116191 ENSMUSG00000065028.1 ENSMUSG00000065028 ENSMUST00000083094 Gm25200 snoRNA Interval_20689 chr10 120244037 120244360 + 0 NA Intergenic Intergenic 17096 ENSMUSG00000020224.15 ENSMUSG00000020224 ENSMUST00000130198 Llph protein_coding Interval_171713 chr9 120410550 120411007 + 0 NA intron (ENSMUSG00000041794.13, intron 1 of 1) protein_coding-intron (ENSMUSG00000041794.13, intron 3 of 16) 24469 ENSMUSG00000041794.13 ENSMUSG00000041794 ENSMUST00000129168 Myrip protein_coding Interval_99420 chr2 160911536 160912865 + 0 NA exon (ENSMUSG00000050700.11, exon 1 of 4) protein_coding-exon (ENSMUSG00000050700.11, exon 1 of 4) 117 ENSMUSG00000050700.11 ENSMUSG00000050700 ENSMUST00000057169 Emilin3 protein_coding Interval_40905 chr12 109727211 109727391 + 0 NA promoter-TSS (ENSMUSG00000076063.1) miRNA-promoter-TSS (ENSMUSG00000076063.1) -32 ENSMUSG00000076219.1 ENSMUSG00000076219 ENSMUST00000102265 Mir487b miRNA Interval_74281 chr17 47866172 47866396 + 0 NA TTS (ENSMUSG00000023991.16) protein_coding-TTS (ENSMUSG00000023991.16) 12669 ENSMUSG00000023991.16 ENSMUSG00000023991 ENSMUST00000153752 Foxp4 protein_coding Interval_112889 chr4 45833218 45834113 + 0 NA Intergenic Intergenic -17302 ENSMUSG00000035551.6 ENSMUSG00000035551 ENSMUST00000145102 Igfbpl1 protein_coding Interval_63728 chr15 103089380 103089830 + 0 NA Intergenic Intergenic 12506 ENSMUSG00000101356.1 ENSMUSG00000101356 ENSMUST00000188137 Gm28876 lincRNA Interval_130547 chr5 128714896 128715518 + 0 NA intron (ENSMUSG00000029423.10, intron 2 of 13) protein_coding-intron (ENSMUSG00000029423.10, intron 2 of 13) 12683 ENSMUSG00000029423.10 ENSMUSG00000029423 ENSMUST00000195959 Piwil1 protein_coding Interval_92492 chr2 60088351 60090766 + 0 NA intron (ENSMUSG00000026987.16, intron 1 of 5) protein_coding-intron (ENSMUSG00000026987.16, intron 1 of 34) 9156 ENSMUSG00000087181.3 ENSMUSG00000087181 ENSMUST00000140763 Gm13570 processed_pseudogene Interval_156769 chr8 58750202 58750464 + 0 NA intron (ENSMUSG00000096914.3, intron 2 of 12) protein_coding-intron (ENSMUSG00000096914.3, intron 1 of 3) -49546 ENSMUSG00000085254.1 ENSMUSG00000085254 ENSMUST00000148792 Gm15881 processed_pseudogene Interval_93219 chr2 71242331 71243796 + 0 NA intron (ENSMUSG00000027012.15, intron 6 of 7) protein_coding-intron (ENSMUSG00000027012.15, intron 5 of 15) 31059 ENSMUSG00000027012.15 ENSMUSG00000027012 ENSMUST00000138613 Dync1i2 protein_coding Interval_113323 chr4 53462515 53463190 + 0 NA intron (ENSMUSG00000028412.17, intron 1 of 3) protein_coding-intron (ENSMUSG00000028412.17, intron 1 of 15) 22181 ENSMUSG00000028412.17 ENSMUSG00000028412 ENSMUST00000133582 Slc44a1 protein_coding Interval_78334 chr18 12027430 12029225 + 0 NA intron (ENSMUSG00000049411.15, intron 14 of 15) protein_coding-intron (ENSMUSG00000049411.15, intron 11 of 12) 93153 ENSMUSG00000049411.15 ENSMUSG00000049411 ENSMUST00000234833 Tmem241 protein_coding Interval_88299 chr2 3474068 3475036 + 0 NA promoter-TSS (ENSMUSG00000026646.16) protein_coding-promoter-TSS (ENSMUSG00000026646.16) 417 ENSMUSG00000026646.16 ENSMUSG00000026646 ENSMUST00000127540 Suv39h2 protein_coding Interval_159953 chr8 105378650 105379643 + 0 NA exon (ENSMUSG00000014782.16, exon 12 of 21) protein_coding-exon (ENSMUSG00000014782.16, exon 12 of 21) 5327 ENSMUSG00000014782.16 ENSMUSG00000014782 ENSMUST00000161672 Plekhg4 protein_coding Interval_30574 chr11 95198055 95199130 + 0 NA Intergenic Intergenic 21779 ENSMUSG00000083548.1 ENSMUSG00000083548 ENSMUST00000117670 Gm11514 processed_pseudogene Interval_151390 chr7 122020326 122021268 + 0 NA intron (ENSMUSG00000030872.14, intron 1 of 4) protein_coding-intron (ENSMUSG00000030872.14, intron 1 of 16) 383 ENSMUSG00000030872.14 ENSMUSG00000030872 ENSMUST00000131081 Gga2 protein_coding Interval_88792 chr2 11038112 11038808 + 0 NA intron (ENSMUSG00000085257.2, intron 1 of 3) lincRNA-intron (ENSMUSG00000085257.2, intron 1 of 3) 1587 ENSMUSG00000085257.2 ENSMUSG00000085257 ENSMUST00000138416 Gm13264 lincRNA Interval_107210 chr3 104643781 104644600 + 0 NA exon (ENSMUSG00000105199.1, exon 1 of 1) sense_intronic-exon (ENSMUSG00000105199.1, exon 1 of 1) 1196 ENSMUSG00000105199.1 ENSMUSG00000105199 ENSMUST00000196766 Gm43581 sense_intronic Interval_37112 chr12 58533864 58534080 + 0 NA Intergenic Intergenic -229934 ENSMUSG00000112487.1 ENSMUSG00000112487 ENSMUST00000219517 Gm18873 processed_pseudogene Interval_78089 chr18 7886492 7886928 + 0 NA intron (ENSMUSG00000024283.15, intron 3 of 13) protein_coding-intron (ENSMUSG00000024283.15, intron 3 of 13) 17209 ENSMUSG00000024283.15 ENSMUSG00000024283 ENSMUST00000167542 Wac protein_coding Interval_41173 chr12 111618079 111618461 + 0 NA intron (ENSMUSG00000113910.1, intron 1 of 1) protein_coding-intron (ENSMUSG00000007411.16, intron 4 of 15) 1400 ENSMUSG00000113910.1 ENSMUSG00000113910 ENSMUST00000220971 Gm48286 sense_overlapping Interval_16421 chr10 62812864 62813274 + 0 NA TTS (ENSMUSG00000047146.17) protein_coding-TTS (ENSMUSG00000047146.17) -29882 ENSMUSG00000112806.1 ENSMUSG00000112806 ENSMUST00000218355 Gm48146 TEC Interval_144146 chr7 19651276 19651773 + 0 NA intron (ENSMUSG00000002981.10, intron 2 of 12) protein_coding-intron (ENSMUSG00000002981.10, intron 2 of 13) -13778 ENSMUSG00000002981.10 ENSMUSG00000002981 ENSMUST00000208594 Clptm1 protein_coding Interval_139609 chr6 102803100 102803642 + 0 NA Intergenic Intergenic 8987 ENSMUSG00000098533.1 ENSMUSG00000098533 ENSMUST00000183546 Mir6373 miRNA Interval_95649 chr2 113469094 113470354 + 0 NA intron (ENSMUSG00000044042.19, intron 3 of 17) protein_coding-intron (ENSMUSG00000044042.19, intron 2 of 16) 7097 ENSMUSG00000105821.1 ENSMUSG00000105821 ENSMUST00000199536 Gm44465 miRNA Interval_76043 chr17 74545815 74546736 + 0 NA promoter-TSS (ENSMUSG00000024073.16) protein_coding-promoter-TSS (ENSMUSG00000024073.16) -18631 ENSMUSG00000117358.1 ENSMUSG00000117358 ENSMUST00000234285 Gm31645 processed_transcript Interval_6142 chr1 97976634 97977774 + 0 NA promoter-TSS (ENSMUSG00000026335.16) protein_coding-promoter-TSS (ENSMUSG00000026335.16) -27815 ENSMUSG00000089782.1 ENSMUSG00000089782 ENSMUST00000162698 Gm3531 processed_pseudogene Interval_141530 chr6 128898304 128898513 + 0 NA TTS (ENSMUSG00000030365.11) protein_coding-TTS (ENSMUSG00000030365.11) -7284 ENSMUSG00000090164.8 ENSMUSG00000090164 ENSMUST00000178918 BC035044 protein_coding Interval_105476 chr3 86873096 86873521 + 0 NA intron (ENSMUSG00000028078.14, intron 2 of 15) protein_coding-intron (ENSMUSG00000028078.14, intron 2 of 15) 8816 ENSMUSG00000104074.1 ENSMUSG00000104074 ENSMUST00000195159 Gm37025 processed_pseudogene Interval_91075 chr2 34835237 34836169 + 0 NA intron (ENSMUSG00000107167.3, intron 1 of 2) protein_coding-intron (ENSMUSG00000107167.3, intron 1 of 2) 2696 ENSMUSG00000107167.3 ENSMUSG00000107167 ENSMUST00000201786 Gm34653 protein_coding Interval_22724 chr11 13978208 13979359 + 0 NA Intergenic Intergenic -183296 ENSMUSG00000081631.1 ENSMUSG00000081631 ENSMUST00000121451 Gm12005 processed_pseudogene Interval_142598 chr6 143903973 143904338 + 0 NA intron (ENSMUSG00000041540.16, intron 8 of 13) protein_coding-intron (ENSMUSG00000041540.16, intron 9 of 14) 86712 ENSMUSG00000107796.1 ENSMUSG00000107796 ENSMUST00000204049 Gm44068 TEC Interval_57944 chr15 25677728 25679333 + 0 NA intron (ENSMUSG00000022272.17, intron 1 of 4) protein_coding-intron (ENSMUSG00000022272.17, intron 2 of 40) -3268 ENSMUSG00000089639.1 ENSMUSG00000089639 ENSMUST00000161524 Gm2862 processed_pseudogene Interval_114186 chr4 66402676 66405230 + 0 NA exon (ENSMUSG00000028373.16, exon 1 of 23) protein_coding-exon (ENSMUSG00000028373.16, exon 1 of 23) 530 ENSMUSG00000028373.16 ENSMUSG00000028373 ENSMUST00000068214 Astn2 protein_coding Interval_94278 chr2 87403391 87403835 + 0 NA Intergenic Intergenic 10130 ENSMUSG00000082028.1 ENSMUSG00000082028 ENSMUST00000118646 Gm1826 processed_pseudogene Interval_140308 chr6 116305814 116306092 + 0 NA TTS (ENSMUSG00000042213.17) protein_coding-TTS (ENSMUSG00000042213.17) 31996 ENSMUSG00000107497.1 ENSMUSG00000107497 ENSMUST00000205137 Gm44957 processed_transcript Interval_10441 chr1 170889085 170889922 + 0 NA Intergenic Intergenic 4438 ENSMUSG00000096968.1 ENSMUSG00000096968 ENSMUST00000180542 Gm26620 protein_coding Interval_42893 chr13 21179479 21181242 + 0 NA promoter-TSS (ENSMUSG00000021326.13) protein_coding-promoter-TSS (ENSMUSG00000021326.13) 136 ENSMUSG00000021326.13 ENSMUSG00000021326 ENSMUST00000124794 Trim27 protein_coding Interval_141083 chr6 124862636 124864202 + 0 NA intron (ENSMUSG00000038390.11, intron 1 of 5) protein_coding-intron (ENSMUSG00000038390.11, intron 1 of 4) 564 ENSMUSG00000038390.11 ENSMUSG00000038390 ENSMUST00000204253 Gpr162 protein_coding Interval_159867 chr8 104480253 104480491 + 0 NA intron (ENSMUSG00000052616.10, intron 10 of 17) protein_coding-intron (ENSMUSG00000052616.10, intron 13 of 19) -27530 ENSMUSG00000077633.1 ENSMUSG00000077633 ENSMUST00000104445 Gm22148 snRNA Interval_84561 chr19 12761592 12763038 + 0 NA Intergenic Intergenic 3317 ENSMUSG00000079415.2 ENSMUSG00000079415 ENSMUST00000112933 Cntf protein_coding Interval_60671 chr15 76059611 76059888 + 0 NA exon (ENSMUSG00000022568.17, exon 19 of 38) protein_coding-exon (ENSMUSG00000022568.17, exon 19 of 38) 5139 ENSMUSG00000098451.1 ENSMUSG00000098451 ENSMUST00000185092 Mir6952 miRNA Interval_35226 chr12 18513992 18515464 + 0 NA exon (ENSMUSG00000073197.9, exon 1 of 4) protein_coding-exon (ENSMUSG00000073197.9, exon 1 of 4) 218 ENSMUSG00000073197.9 ENSMUSG00000073197 ENSMUST00000063216 5730507C01Rik protein_coding Interval_14805 chr10 40062857 40063286 + 0 NA intron (ENSMUSG00000019838.11, intron 3 of 5) protein_coding-intron (ENSMUSG00000019838.11, intron 3 of 5) -37876 ENSMUSG00000038522.7 ENSMUSG00000038522 ENSMUST00000239109 Mfsd4b1 protein_coding Interval_2977 chr1 51825839 51826113 + 0 NA intron (ENSMUSG00000018417.14, intron 4 of 6) protein_coding-intron (ENSMUSG00000018417.14, intron 4 of 30) 23142 ENSMUSG00000101724.1 ENSMUSG00000101724 ENSMUST00000186428 Gm29453 sense_intronic Interval_88450 chr2 5161235 5161669 + 0 NA intron (ENSMUSG00000026676.7, intron 2 of 2) protein_coding-intron (ENSMUSG00000026676.7, intron 2 of 2) 5060 ENSMUSG00000081005.1 ENSMUSG00000081005 ENSMUST00000119322 Gm13198 processed_pseudogene Interval_114338 chr4 73750225 73751170 + 0 NA intron (ENSMUSG00000043003.14, intron 5 of 16) protein_coding-intron (ENSMUSG00000043003.14, intron 6 of 17) 40297 ENSMUSG00000043003.14 ENSMUSG00000043003 ENSMUST00000222414 Rasef protein_coding Interval_95059 chr2 103613624 103614586 + 0 NA intron (ENSMUSG00000032724.5, intron 1 of 16) protein_coding-intron (ENSMUSG00000032724.5, intron 1 of 16) 66846 ENSMUSG00000081687.1 ENSMUSG00000081687 ENSMUST00000118456 Gm13996 processed_pseudogene Interval_54276 chr14 67052190 67053252 + 0 NA intron (ENSMUSG00000022052.9, intron 2 of 9) protein_coding-intron (ENSMUSG00000022052.9, intron 2 of 9) -9192 ENSMUSG00000022052.9 ENSMUSG00000022052 ENSMUST00000225469 Ppp2r2a protein_coding Interval_56875 chr14 122687345 122687571 + 0 NA exon (ENSMUSG00000115264.1, exon 1 of 1) TEC-exon (ENSMUSG00000115264.1, exon 1 of 1) 1142 ENSMUSG00000115264.1 ENSMUSG00000115264 ENSMUST00000226674 Gm49260 TEC Interval_121513 chr5 3064167 3065174 + 0 NA Intergenic Intergenic -6073 ENSMUSG00000090701.1 ENSMUSG00000090701 ENSMUST00000166202 Gm6486 unprocessed_pseudogene Interval_34239 chr11 121536247 121536492 + 0 NA intron (ENSMUSG00000039230.14, intron 3 of 9) protein_coding-intron (ENSMUSG00000039230.14, intron 13 of 38) -17036 ENSMUSG00000039238.6 ENSMUSG00000039238 ENSMUST00000092298 Zfp750 protein_coding Interval_113327 chr4 53480144 53481502 + 0 NA intron (ENSMUSG00000028412.17, intron 1 of 3) protein_coding-intron (ENSMUSG00000028412.17, intron 1 of 15) 40152 ENSMUSG00000028412.17 ENSMUSG00000028412 ENSMUST00000133582 Slc44a1 protein_coding Interval_40104 chr12 101310017 101310397 + 0 NA intron (ENSMUSG00000113134.2, intron 12 of 21) transcribed_unprocessed_pseudogene-intron (ENSMUSG00000113134.2, intron 12 of 21) -86509 ENSMUSG00000064424.1 ENSMUSG00000064424 ENSMUST00000082490 Gm22749 snRNA Interval_126041 chr5 77038614 77038818 + 0 NA intron (ENSMUSG00000029248.14, intron 1 of 3) protein_coding-intron (ENSMUSG00000029248.14, intron 1 of 8) 1662 ENSMUSG00000029248.14 ENSMUSG00000029248 ENSMUST00000118941 Thegl protein_coding Interval_114418 chr4 75812261 75812722 + 0 NA Intergenic Intergenic -42027 ENSMUSG00000084253.1 ENSMUSG00000084253 ENSMUST00000118109 Gm11256 processed_pseudogene Interval_56965 chr14 124266787 124267370 + 0 NA intron (ENSMUSG00000025551.13, intron 1 of 4) protein_coding-intron (ENSMUSG00000025551.13, intron 1 of 4) -131613 ENSMUSG00000115472.1 ENSMUSG00000115472 ENSMUST00000228023 Gm49070 processed_pseudogene Interval_81448 chr18 60811990 60812916 + 0 NA TTS (ENSMUSG00000093327.1) miRNA-TTS (ENSMUSG00000093327.1) 377 ENSMUSG00000093327.1 ENSMUSG00000093327 ENSMUST00000175586 Mir5107 miRNA Interval_125269 chr5 65790811 65791101 + 0 NA exon (ENSMUSG00000037795.14, exon 4 of 18) protein_coding-exon (ENSMUSG00000037795.14, exon 4 of 18) 12942 ENSMUSG00000106682.1 ENSMUSG00000106682 ENSMUST00000200774 Gm42648 TEC Interval_159523 chr8 95219818 95220045 + 0 NA Intergenic Intergenic 80735 ENSMUSG00000031789.17 ENSMUSG00000031789 ENSMUST00000212237 Cngb1 protein_coding Interval_65897 chr16 30113015 30113784 + 0 NA Intergenic Intergenic -20517 ENSMUSG00000116997.1 ENSMUSG00000116997 ENSMUST00000232024 Gm20040 processed_pseudogene Interval_139903 chr6 112563614 112564038 + 0 NA exon (ENSMUSG00000083443.1, exon 1 of 1) processed_pseudogene-exon (ENSMUSG00000083443.1, exon 1 of 1) 184 ENSMUSG00000083443.1 ENSMUSG00000083443 ENSMUST00000120088 Gm15519 processed_pseudogene Interval_73322 chr17 36198107 36198728 + 0 NA promoter-TSS (ENSMUSG00000092306.3) unprocessed_pseudogene-promoter-TSS (ENSMUSG00000092306.3) 96 ENSMUSG00000092306.3 ENSMUSG00000092306 ENSMUST00000173290 Gm20447 unprocessed_pseudogene Interval_157026 chr8 64596552 64598837 + 0 NA intron (ENSMUSG00000037852.8, intron 6 of 8) protein_coding-intron (ENSMUSG00000037852.8, intron 6 of 8) 24303 ENSMUSG00000037852.8 ENSMUSG00000037852 ENSMUST00000211312 Cpe protein_coding Interval_172928 chrX 56374198 56375204 + 0 NA promoter-TSS (ENSMUSG00000097288.1) antisense-promoter-TSS (ENSMUSG00000097288.1) 89 ENSMUSG00000097288.1 ENSMUSG00000097288 ENSMUST00000181581 Gm2155 antisense Interval_172266 chrX 12122728 12124489 + 0 NA intron (ENSMUSG00000040363.15, intron 1 of 13) protein_coding-intron (ENSMUSG00000040363.15, intron 1 of 13) 36738 ENSMUSG00000040363.15 ENSMUSG00000040363 ENSMUST00000209776 Bcor protein_coding Interval_100247 chr2 167931677 167932924 + 0 NA promoter-TSS (ENSMUSG00000027540.13) protein_coding-promoter-TSS (ENSMUSG00000027540.13) -72 ENSMUSG00000027540.13 ENSMUSG00000027540 ENSMUST00000142717 Ptpn1 protein_coding Interval_142202 chr6 138289525 138289786 + 0 NA Intergenic Intergenic -133545 ENSMUSG00000089957.2 ENSMUSG00000089957 ENSMUST00000162868 A830011K09Rik antisense Interval_113701 chr4 57737119 57737333 + 0 NA intron (ENSMUSG00000038729.24, intron 1 of 2) protein_coding-intron (ENSMUSG00000038729.24, intron 1 of 2) -25381 ENSMUSG00000089286.1 ENSMUSG00000089286 ENSMUST00000158661 Gm24277 snRNA Interval_14472 chr10 34166047 34166313 + 0 NA intron (ENSMUSG00000039497.8, intron 2 of 2) protein_coding-intron (ENSMUSG00000039497.8, intron 2 of 5) 10065 ENSMUSG00000039497.8 ENSMUSG00000039497 ENSMUST00000216194 Dse protein_coding Interval_143280 chr7 4929800 4930032 + 0 NA intron (ENSMUSG00000035279.8, intron 7 of 13) protein_coding-intron (ENSMUSG00000035279.8, intron 7 of 13) 6939 ENSMUSG00000035285.6 ENSMUSG00000035285 ENSMUST00000208754 Nat14 protein_coding Interval_30713 chr11 96052132 96052378 + 0 NA intron (ENSMUSG00000014349.7, intron 5 of 6) protein_coding-intron (ENSMUSG00000014349.7, intron 5 of 6) 13133 ENSMUSG00000014349.7 ENSMUSG00000014349 ENSMUST00000100528 Ube2z protein_coding Interval_63860 chr16 4047805 4048058 + 0 NA intron (ENSMUSG00000005981.11, intron 12 of 17) protein_coding-intron (ENSMUSG00000005981.11, intron 12 of 17) 9566 ENSMUSG00000093262.1 ENSMUSG00000093262 ENSMUST00000175521 Gm23413 miRNA Interval_99783 chr2 164885513 164886416 + 0 NA exon (ENSMUSG00000039849.6, exon 7 of 17) protein_coding-exon (ENSMUSG00000039849.6, exon 7 of 17) 6660 ENSMUSG00000039849.6 ENSMUSG00000039849 ENSMUST00000130213 Pcif1 protein_coding Interval_9031 chr1 153191080 153192664 + 0 NA Intergenic Intergenic 47454 ENSMUSG00000026478.14 ENSMUSG00000026478 ENSMUST00000159251 Lamc1 protein_coding Interval_128417 chr5 113220589 113221691 + 0 NA promoter-TSS (ENSMUSG00000051339.10) protein_coding-promoter-TSS (ENSMUSG00000051339.10) -5769 ENSMUSG00000066964.2 ENSMUSG00000066964 ENSMUST00000086615 Tmem211 protein_coding Interval_4013 chr1 66406690 66407808 + 0 NA exon (ENSMUSG00000015222.18, exon 4 of 4) protein_coding-exon (ENSMUSG00000015222.18, exon 4 of 4) -28833 ENSMUSG00000065694.1 ENSMUSG00000065694 ENSMUST00000083760 Gm25411 snRNA Interval_143140 chr7 3622438 3622746 + 0 NA intron (ENSMUSG00000006335.16, intron 1 of 2) protein_coding-intron (ENSMUSG00000006335.16, intron 2 of 4) 5207 ENSMUSG00000035674.13 ENSMUSG00000035674 ENSMUST00000134683 Ndufa3 protein_coding Interval_10380 chr1 170155470 170156609 + 0 NA intron (ENSMUSG00000026670.15, intron 5 of 6) protein_coding-intron (ENSMUSG00000026670.15, intron 5 of 10) 18727 ENSMUSG00000026670.15 ENSMUSG00000026670 ENSMUST00000191690 Uap1 protein_coding Interval_72929 chr17 33583871 33586682 + 0 NA intron (ENSMUSG00000024300.17, intron 2 of 17) protein_coding-intron (ENSMUSG00000024300.17, intron 12 of 27) -12865 ENSMUSG00000024300.17 ENSMUSG00000024300 ENSMUST00000235099 Myo1f protein_coding Interval_69538 chr16 94103700 94104097 + 0 NA intron (ENSMUSG00000062713.8, intron 3 of 10) protein_coding-intron (ENSMUSG00000062713.8, intron 3 of 10) 18967 ENSMUSG00000062713.8 ENSMUSG00000062713 ENSMUST00000231295 Sim2 protein_coding Interval_6699 chr1 118864113 118864936 + 0 NA intron (ENSMUSG00000048402.14, intron 2 of 5) protein_coding-intron (ENSMUSG00000048402.14, intron 5 of 13) 54388 ENSMUSG00000100040.1 ENSMUSG00000100040 ENSMUST00000190981 Gm28467 processed_pseudogene Interval_11217 chr1 180249790 180250923 + 0 NA intron (ENSMUSG00000010609.15, intron 2 of 2) protein_coding-intron (ENSMUSG00000010609.15, intron 1 of 10) -6073 ENSMUSG00000102923.1 ENSMUSG00000102923 ENSMUST00000192164 Gm31728 antisense Interval_139579 chr6 101533924 101534820 + 0 NA intron (ENSMUSG00000108274.1, intron 2 of 2) lincRNA-intron (ENSMUSG00000108274.1, intron 2 of 2) -4381 ENSMUSG00000107696.1 ENSMUSG00000107696 ENSMUST00000203701 Gm44171 TEC Interval_98423 chr2 152255031 152255765 + 0 NA intron (ENSMUSG00000074698.10, intron 3 of 5) protein_coding-intron (ENSMUSG00000074698.10, intron 3 of 12) 28485 ENSMUSG00000074698.10 ENSMUSG00000074698 ENSMUST00000141597 Csnk2a1 protein_coding Interval_29907 chr11 87677531 87678662 + 0 NA intron (ENSMUSG00000034177.15, intron 1 of 7) protein_coding-intron (ENSMUSG00000034177.15, intron 1 of 8) 15009 ENSMUSG00000034177.15 ENSMUSG00000034177 ENSMUST00000150866 Rnf43 protein_coding Interval_163696 chr9 24487304 24488754 + 0 NA promoter-TSS (ENSMUSG00000043067.15) protein_coding-promoter-TSS (ENSMUSG00000043067.15) 15111 ENSMUSG00000043067.15 ENSMUSG00000043067 ENSMUST00000129048 Dpy19l1 protein_coding Interval_90551 chr2 31107003 31107657 + 0 NA intron (ENSMUSG00000075415.13, intron 1 of 5) protein_coding-intron (ENSMUSG00000075415.13, intron 1 of 13) 8982 ENSMUSG00000075415.13 ENSMUSG00000075415 ENSMUST00000136085 Fnbp1 protein_coding Interval_9121 chr1 153765839 153766942 + 0 NA Intergenic Intergenic 14438 ENSMUSG00000066800.11 ENSMUSG00000066800 ENSMUST00000182016 Rnasel protein_coding Interval_173950 chrX 115030557 115031612 + 0 NA Intergenic Intergenic 41934 ENSMUSG00000083971.3 ENSMUSG00000083971 ENSMUST00000119458 Gm5943 processed_pseudogene Interval_161610 chr8 121558248 121559139 + 0 NA intron (ENSMUSG00000052934.14, intron 1 of 3) protein_coding-intron (ENSMUSG00000052934.14, intron 5 of 8) 14305 ENSMUSG00000097424.2 ENSMUSG00000097424 ENSMUST00000181679 1700030M09Rik bidirectional_promoter_lncRNA Interval_111477 chr4 21970270 21970586 + 0 NA intron (ENSMUSG00000028246.13, intron 4 of 5) protein_coding-intron (ENSMUSG00000028246.13, intron 4 of 5) 11972 ENSMUSG00000028246.13 ENSMUSG00000028246 ENSMUST00000155220 Faxc protein_coding Interval_112750 chr4 44590795 44591049 + 0 NA intron (ENSMUSG00000014030.15, intron 6 of 8) protein_coding-intron (ENSMUSG00000014030.15, intron 6 of 8) 16646 ENSMUSG00000092761.1 ENSMUSG00000092761 ENSMUST00000175020 Mir5120 miRNA Interval_23013 chr11 18933652 18933993 + 0 NA intron (ENSMUSG00000020160.18, intron 6 of 9) protein_coding-intron (ENSMUSG00000020160.18, intron 8 of 12) -43982 ENSMUSG00000104244.1 ENSMUSG00000104244 ENSMUST00000195805 2900018N21Rik TEC Interval_37398 chr12 66667923 66668361 + 0 NA intron (ENSMUSG00000034912.18, intron 6 of 15) protein_coding-intron (ENSMUSG00000034912.18, intron 6 of 16) -12799 ENSMUSG00000034912.18 ENSMUSG00000034912 ENSMUST00000179025 Mdga2 protein_coding Interval_36433 chr12 44535522 44536556 + 0 NA intron (ENSMUSG00000020598.16, intron 3 of 30) protein_coding-intron (ENSMUSG00000020598.16, intron 4 of 30) 86623 ENSMUSG00000112823.1 ENSMUSG00000112823 ENSMUST00000217983 Gm6125 processed_pseudogene Interval_45688 chr13 56940546 56940893 + 0 NA Intergenic Intergenic -9771 ENSMUSG00000077279.1 ENSMUSG00000077279 ENSMUST00000104091 Gm22777 snoRNA Interval_29405 chr11 83792956 83793462 + 0 NA Intergenic Intergenic -7255 ENSMUSG00000081342.1 ENSMUSG00000081342 ENSMUST00000122379 Gm11434 processed_pseudogene Interval_126889 chr5 96764024 96764489 + 0 NA intron (ENSMUSG00000034687.8, intron 64 of 73) protein_coding-intron (ENSMUSG00000034687.8, intron 64 of 73) -24892 ENSMUSG00000106526.1 ENSMUSG00000106526 ENSMUST00000200077 Gm42604 antisense Interval_104534 chr3 67493405 67493722 + 0 NA intron (ENSMUSG00000049404.7, intron 2 of 5) protein_coding-intron (ENSMUSG00000049404.7, intron 2 of 5) 16585 ENSMUSG00000103703.2 ENSMUSG00000103703 ENSMUST00000195639 Gm42568 TEC Interval_135174 chr6 37215404 37217476 + 0 NA intron (ENSMUSG00000038665.15, intron 1 of 32) protein_coding-intron (ENSMUSG00000038665.15, intron 2 of 32) 83744 ENSMUSG00000038665.15 ENSMUSG00000038665 ENSMUST00000136457 Dgki protein_coding Interval_114395 chr4 74971124 74971339 + 0 NA Intergenic Intergenic 110469 ENSMUSG00000082533.1 ENSMUSG00000082533 ENSMUST00000118486 Gm11253 processed_pseudogene Interval_50285 chr14 11654220 11655156 + 0 NA intron (ENSMUSG00000021745.14, intron 1 of 3) protein_coding-intron (ENSMUSG00000021745.14, intron 1 of 29) -113255 ENSMUSG00000114310.1 ENSMUSG00000114310 ENSMUST00000225152 Gm48602 TEC Interval_77120 chr17 86699788 86700676 + 0 NA Intergenic Intergenic 3175 ENSMUSG00000087710.1 ENSMUSG00000087710 ENSMUST00000157085 Gm22235 snRNA Interval_141980 chr6 136308182 136308684 + 0 NA Intergenic Intergenic -20097 ENSMUSG00000094973.2 ENSMUSG00000094973 ENSMUST00000077886 Eif4a3l1 protein_coding Interval_65112 chr16 19760004 19761475 + 0 NA promoter-TSS (ENSMUSG00000022686.14) protein_coding-promoter-TSS (ENSMUSG00000022686.14) 505 ENSMUSG00000022686.14 ENSMUSG00000022686 ENSMUST00000119468 B3gnt5 protein_coding Interval_101721 chr3 9142070 9142339 + 0 NA Intergenic Intergenic 69437 ENSMUSG00000103011.1 ENSMUSG00000103011 ENSMUST00000193160 Gm8860 processed_pseudogene Interval_137672 chr6 78616609 78616990 + 0 NA Intergenic Intergenic -119358 ENSMUSG00000108073.1 ENSMUSG00000108073 ENSMUST00000203989 Gm6072 processed_pseudogene Interval_76391 chr17 79862286 79862795 + 0 NA intron (ENSMUSG00000059811.13, intron 3 of 12) protein_coding-intron (ENSMUSG00000059811.13, intron 4 of 12) -6410 ENSMUSG00000059811.13 ENSMUSG00000059811 ENSMUST00000222243 Atl2 protein_coding Interval_71834 chr17 26414502 26416092 + 0 NA intron (ENSMUSG00000034413.14, intron 1 of 3) protein_coding-intron (ENSMUSG00000034413.14, intron 1 of 4) 468 ENSMUSG00000034413.14 ENSMUSG00000034413 ENSMUST00000053020 Neurl1b protein_coding Interval_152692 chr7 136339418 136339993 + 0 NA intron (ENSMUSG00000109633.1, intron 4 of 4) lincRNA-intron (ENSMUSG00000109633.1, intron 4 of 4) 9710 ENSMUSG00000109633.1 ENSMUSG00000109633 ENSMUST00000209560 C230079O03Rik lincRNA Interval_43635 chr13 34254899 34255141 + 0 NA intron (ENSMUSG00000038267.15, intron 3 of 9) protein_coding-intron (ENSMUSG00000038267.15, intron 3 of 10) 22232 ENSMUSG00000088573.1 ENSMUSG00000088573 ENSMUST00000157948 Gm24530 misc_RNA Interval_29257 chr11 82371717 82372130 + 0 NA Intergenic Intergenic 15417 ENSMUSG00000113710.1 ENSMUSG00000113710 ENSMUST00000221531 Gm38577 lincRNA Interval_65182 chr16 20390041 20391030 + 0 NA intron (ENSMUSG00000022822.16, intron 4 of 6) protein_coding-intron (ENSMUSG00000022822.16, intron 11 of 29) 8413 ENSMUSG00000022822.16 ENSMUSG00000022822 ENSMUST00000231522 Abcc5 protein_coding Interval_141189 chr6 125484084 125484662 + 0 NA TTS (ENSMUSG00000101191.6) antisense-TTS (ENSMUSG00000101191.6) 2429 ENSMUSG00000101191.6 ENSMUSG00000101191 ENSMUST00000187724 Gm28809 antisense Interval_133437 chr6 5010635 5011401 + 0 NA intron (ENSMUSG00000032827.15, intron 1 of 17) protein_coding-intron (ENSMUSG00000032827.15, intron 2 of 15) 52035 ENSMUSG00000097396.1 ENSMUSG00000097396 ENSMUST00000180645 Gm26556 TEC Interval_161751 chr8 122547898 122548256 + 0 NA intron (ENSMUSG00000014444.17, intron 1 of 50) protein_coding-intron (ENSMUSG00000014444.17, intron 1 of 50) 3252 ENSMUSG00000014444.17 ENSMUSG00000014444 ENSMUST00000148497 Piezo1 protein_coding Interval_173379 chrX 85919054 85919580 + 0 NA Intergenic Intergenic 48963 ENSMUSG00000025058.4 ENSMUSG00000025058 ENSMUST00000113976 5430427O19Rik protein_coding Interval_70605 chr17 12251993 12252299 + 0 NA intron (ENSMUSG00000014426.9, intron 11 of 25) protein_coding-intron (ENSMUSG00000014426.9, intron 11 of 26) -27971 ENSMUSG00000117325.1 ENSMUSG00000117325 ENSMUST00000233669 Gm49962 processed_pseudogene Interval_135479 chr6 39542890 39544021 + 0 NA exon (ENSMUSG00000085058.2, exon 2 of 2) processed_transcript-exon (ENSMUSG00000085058.2, exon 2 of 2) 15929 ENSMUSG00000085058.2 ENSMUSG00000085058 ENSMUST00000200951 8030453O22Rik processed_transcript Interval_82673 chr18 75833908 75834232 + 0 NA intron (ENSMUSG00000044646.15, intron 1 of 5) protein_coding-intron (ENSMUSG00000044646.15, intron 1 of 4) 13855 ENSMUSG00000044646.15 ENSMUSG00000044646 ENSMUST00000167921 Zbtb7c protein_coding Interval_85750 chr19 30344790 30345353 + 0 NA Intergenic Intergenic 80191 ENSMUSG00000089016.1 ENSMUSG00000089016 ENSMUST00000158391 Gm24883 misc_RNA Interval_169479 chr9 98123361 98123987 + 0 NA Intergenic Intergenic 63479 ENSMUSG00000046995.3 ENSMUSG00000046995 ENSMUST00000061643 2610303G11Rik lincRNA Interval_22661 chr11 12637239 12638363 + 0 NA Intergenic Intergenic -39132 ENSMUSG00000089034.1 ENSMUSG00000089034 ENSMUST00000158409 Gm22156 snoRNA Interval_117699 chr4 125623519 125623874 + 0 NA intron (ENSMUSG00000001985.9, intron 2 of 15) protein_coding-intron (ENSMUSG00000001985.9, intron 2 of 15) 118947 ENSMUSG00000094403.1 ENSMUSG00000094403 ENSMUST00000102081 Mir692-2 miRNA Interval_106026 chr3 90836828 90837168 + 0 NA Intergenic Intergenic 11256 ENSMUSG00000106174.1 ENSMUSG00000106174 ENSMUST00000200121 Gm43235 unprocessed_pseudogene Interval_13899 chr10 24407675 24408583 + 0 NA Intergenic Intergenic -39361 ENSMUSG00000086148.1 ENSMUSG00000086148 ENSMUST00000134627 Gm15271 lincRNA Interval_40741 chr12 108073164 108073373 + 0 NA Intergenic Intergenic -69854 ENSMUSG00000048251.15 ENSMUSG00000048251 ENSMUST00000109891 Bcl11b protein_coding Interval_87395 chr19 48515372 48515807 + 0 NA intron (ENSMUSG00000063434.6, intron 3 of 6) protein_coding-intron (ENSMUSG00000063434.6, intron 3 of 26) 85629 ENSMUSG00000063434.6 ENSMUSG00000063434 ENSMUST00000235967 Sorcs3 protein_coding Interval_170765 chr9 110616792 110617920 + 0 NA promoter-TSS (ENSMUSG00000044791.16) protein_coding-promoter-TSS (ENSMUSG00000044791.16) 7075 ENSMUSG00000032491.14 ENSMUSG00000032491 ENSMUST00000197894 Nradd protein_coding Interval_33087 chr11 114313762 114315487 + 0 NA Intergenic Intergenic -42505 ENSMUSG00000081548.1 ENSMUSG00000081548 ENSMUST00000122121 Gm11692 processed_pseudogene Interval_150754 chr7 114129091 114129319 + 0 NA Intergenic Intergenic -11441 ENSMUSG00000055723.6 ENSMUSG00000055723 ENSMUST00000210075 Rras2 protein_coding Interval_159774 chr8 102780860 102781148 + 0 NA promoter-TSS (ENSMUSG00000110269.1) TEC-promoter-TSS (ENSMUSG00000110269.1) 38 ENSMUSG00000110269.1 ENSMUSG00000110269 ENSMUST00000210042 Gm45258 TEC Interval_84555 chr19 12737694 12738350 + 0 NA Intergenic Intergenic -16819 ENSMUSG00000084981.7 ENSMUSG00000084981 ENSMUST00000124184 Gm15962 antisense Interval_86400 chr19 40242446 40243057 + 0 NA intron (ENSMUSG00000055044.12, intron 5 of 5) protein_coding-intron (ENSMUSG00000055044.12, intron 4 of 6) -11946 ENSMUSG00000055044.12 ENSMUSG00000055044 ENSMUST00000182636 Pdlim1 protein_coding Interval_117266 chr4 121159880 121161046 + 0 NA intron (ENSMUSG00000049878.13, intron 3 of 5) protein_coding-intron (ENSMUSG00000049878.13, intron 5 of 7) 25806 ENSMUSG00000064547.1 ENSMUSG00000064547 ENSMUST00000082613 Gm22982 misc_RNA Interval_52573 chr14 47579713 47581536 + 0 NA Intergenic Intergenic 11098 ENSMUSG00000115571.1 ENSMUSG00000115571 ENSMUST00000228790 Gm6616 processed_pseudogene Interval_874 chr1 12853729 12854435 + 0 NA intron (ENSMUSG00000016918.15, intron 20 of 20) protein_coding-intron (ENSMUSG00000016918.15, intron 21 of 21) 134618 ENSMUSG00000016918.15 ENSMUSG00000016918 ENSMUST00000185780 Sulf1 protein_coding Interval_104759 chr3 71123128 71123878 + 0 NA Intergenic Intergenic 278044 ENSMUSG00000102666.1 ENSMUSG00000102666 ENSMUST00000193033 Gm8599 processed_pseudogene Interval_133199 chr5 150495550 150496629 + 0 NA exon (ENSMUSG00000056602.12, exon 1 of 1) protein_coding-exon (ENSMUSG00000056602.12, exon 1 of 1) 6044 ENSMUSG00000106738.1 ENSMUSG00000106738 ENSMUST00000202066 Gm5 lincRNA Interval_45534 chr13 55698624 55700079 + 0 NA exon (ENSMUSG00000045767.9, exon 2 of 2) protein_coding-exon (ENSMUSG00000045767.9, exon 2 of 2) 6227 ENSMUSG00000045767.9 ENSMUSG00000045767 ENSMUST00000057844 B230219D22Rik protein_coding Interval_36989 chr12 55948930 55949129 + 0 NA Intergenic Intergenic -38106 ENSMUSG00000065244.1 ENSMUSG00000065244 ENSMUST00000083310 Gm22296 snRNA Interval_18854 chr10 91297929 91298374 + 0 NA Intergenic Intergenic -12194 ENSMUSG00000111525.1 ENSMUSG00000111525 ENSMUST00000214371 Gm47082 lincRNA Interval_151526 chr7 123272905 123274673 + 0 NA TTS (ENSMUSG00000030769.15) protein_coding-TTS (ENSMUSG00000030769.15) 8600 ENSMUSG00000030769.15 ENSMUSG00000030769 ENSMUST00000206180 Slc5a11 protein_coding Interval_137971 chr6 83851635 83853344 + 0 NA Intergenic Intergenic -7394 ENSMUSG00000107644.2 ENSMUSG00000107644 ENSMUST00000204344 Gm6342 processed_pseudogene Interval_106995 chr3 102697526 102697866 + 0 NA Intergenic Intergenic -10835 ENSMUSG00000105498.1 ENSMUSG00000105498 ENSMUST00000196363 Gm42677 processed_pseudogene Interval_124988 chr5 63368319 63368960 + 0 NA Intergenic Intergenic 282255 ENSMUSG00000104868.1 ENSMUSG00000104868 ENSMUST00000067917 Gm9954 TEC Interval_119431 chr4 137597064 137598946 + 0 NA intron (ENSMUSG00000043411.15, intron 2 of 3) protein_coding-intron (ENSMUSG00000043411.15, intron 1 of 27) -15901 ENSMUSG00000094035.3 ENSMUSG00000094035 ENSMUST00000238941 Ldlrad2 protein_coding Interval_107875 chr3 116497434 116498407 + 0 NA intron (ENSMUSG00000000339.14, intron 5 of 6) protein_coding-intron (ENSMUSG00000000339.14, intron 6 of 10) 10145 ENSMUSG00000000339.14 ENSMUSG00000000339 ENSMUST00000143425 Rtca protein_coding Interval_154873 chr8 24545840 24547782 + 0 NA intron (ENSMUSG00000031549.16, intron 5 of 8) protein_coding-intron (ENSMUSG00000031549.16, intron 6 of 9) 7786 ENSMUSG00000031549.16 ENSMUSG00000031549 ENSMUST00000138155 Ido2 protein_coding Interval_115142 chr4 91376383 91376891 + 0 NA promoter-TSS (ENSMUSG00000008489.18) protein_coding-promoter-TSS (ENSMUSG00000008489.18) -3274 ENSMUSG00000098563.1 ENSMUSG00000098563 ENSMUST00000183406 Mir6402 miRNA Interval_108352 chr3 124890002 124890878 + 0 NA intron (ENSMUSG00000106423.1, intron 1 of 3) lincRNA-intron (ENSMUSG00000106423.1, intron 1 of 3) 41851 ENSMUSG00000088099.1 ENSMUSG00000088099 ENSMUST00000157474 Gm23673 misc_RNA Interval_75157 chr17 64113316 64113936 + 0 NA intron (ENSMUSG00000000127.15, intron 15 of 17) protein_coding-intron (ENSMUSG00000000127.15, intron 15 of 17) 207989 ENSMUSG00000080455.1 ENSMUSG00000080455 ENSMUST00000116805 Gm24194 miRNA Interval_131305 chr5 136287936 136288678 + 0 NA intron (ENSMUSG00000029705.17, intron 20 of 23) protein_coding-intron (ENSMUSG00000029705.17, intron 20 of 23) 13311 ENSMUSG00000086220.1 ENSMUSG00000086220 ENSMUST00000148082 Gm16599 antisense Interval_22370 chr11 9225255 9225552 + 0 NA TTS (ENSMUSG00000004668.14) protein_coding-TTS (ENSMUSG00000004668.14) 31952 ENSMUSG00000004668.14 ENSMUSG00000004668 ENSMUST00000151522 Abca13 protein_coding Interval_124245 chr5 42054842 42055061 + 0 NA Intergenic Intergenic -13009 ENSMUSG00000067285.4 ENSMUSG00000067285 ENSMUST00000087332 Gm16223 protein_coding Interval_130355 chr5 126622952 126623771 + 0 NA Intergenic Intergenic -83553 ENSMUSG00000105673.1 ENSMUSG00000105673 ENSMUST00000197352 1700081B01Rik lincRNA Interval_172765 chrX 48438853 48439343 + 0 NA intron (ENSMUSG00000031103.12, intron 1 of 7) protein_coding-intron (ENSMUSG00000031103.12, intron 1 of 8) 24034 ENSMUSG00000031103.12 ENSMUSG00000031103 ENSMUST00000140486 Elf4 protein_coding Interval_46011 chr13 60078475 60079099 + 0 NA intron (ENSMUSG00000114531.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000114531.1, intron 1 of 2) 10146 ENSMUSG00000114734.1 ENSMUSG00000114734 ENSMUST00000224326 Gm48397 lincRNA Interval_107085 chr3 103403152 103403572 + 0 NA Intergenic Intergenic 10429 ENSMUSG00000089029.1 ENSMUSG00000089029 ENSMUST00000158404 Gm25009 snoRNA Interval_97578 chr2 140077192 140078116 + 0 NA Intergenic Intergenic -4185 ENSMUSG00000080006.4 ENSMUSG00000080006 ENSMUST00000116122 Rps19-ps7 processed_pseudogene Interval_19573 chr10 103402409 103402647 + 0 NA intron (ENSMUSG00000019894.14, intron 6 of 11) protein_coding-intron (ENSMUSG00000019894.14, intron 7 of 12) 9078 ENSMUSG00000019894.14 ENSMUSG00000019894 ENSMUST00000219936 Slc6a15 protein_coding Interval_36240 chr12 40177005 40177216 + 0 NA exon (ENSMUSG00000071342.5, exon 4 of 4) protein_coding-exon (ENSMUSG00000071342.5, exon 4 of 4) -21546 ENSMUSG00000090387.1 ENSMUSG00000090387 ENSMUST00000164804 Gm17056 antisense Interval_99644 chr2 163889426 163889663 + 0 NA intron (ENSMUSG00000035226.5, intron 1 of 5) protein_coding-intron (ENSMUSG00000035226.5, intron 1 of 5) 29139 ENSMUSG00000035226.5 ENSMUSG00000035226 ENSMUST00000044734 Rims4 protein_coding Interval_23255 chr11 20929293 20930284 + 0 NA Intergenic Intergenic 7913 ENSMUSG00000096061.1 ENSMUSG00000096061 ENSMUST00000178821 Gm23681 miRNA Interval_137378 chr6 71801178 71802299 + 0 NA intron (ENSMUSG00000052852.8, intron 7 of 8) protein_coding-intron (ENSMUSG00000052852.8, intron 6 of 6) -1150 ENSMUSG00000108594.1 ENSMUSG00000108594 ENSMUST00000205395 Gm44770 TEC Interval_17051 chr10 70876281 70876775 + 0 NA intron (ENSMUSG00000047692.6, intron 3 of 5) antisense-intron (ENSMUSG00000047692.6, intron 3 of 6) -4108 ENSMUSG00000112032.1 ENSMUSG00000112032 ENSMUST00000217867 Gm48036 lincRNA Interval_59049 chr15 42449474 42449914 + 0 NA intron (ENSMUSG00000022309.9, intron 7 of 8) protein_coding-intron (ENSMUSG00000022309.9, intron 7 of 8) 49939 ENSMUSG00000115894.1 ENSMUSG00000115894 ENSMUST00000229218 Gm49453 processed_pseudogene Interval_57075 chr15 5713194 5713392 + 0 NA promoter-TSS (ENSMUSG00000115185.1) processed_pseudogene-promoter-TSS (ENSMUSG00000115185.1) -741 ENSMUSG00000115185.1 ENSMUSG00000115185 ENSMUST00000226984 Gm18715 processed_pseudogene Interval_113807 chr4 58956815 58957128 + 0 NA exon (ENSMUSG00000038630.8, exon 6 of 6) protein_coding-exon (ENSMUSG00000038630.8, exon 6 of 6) 13343 ENSMUSG00000038630.8 ENSMUSG00000038630 ENSMUST00000107554 Zkscan16 protein_coding Interval_4748 chr1 78279000 78279957 + 0 NA Intergenic Intergenic -30867 ENSMUSG00000032908.9 ENSMUSG00000032908 ENSMUST00000036172 Sgpp2 protein_coding Interval_14217 chr10 29019511 29020740 + 0 NA Intergenic Intergenic -10003 ENSMUSG00000095478.2 ENSMUSG00000095478 ENSMUST00000178707 Gm9824 processed_pseudogene Interval_173800 chrX 104474084 104474306 + 0 NA Intergenic Intergenic -8623 ENSMUSG00000073016.3 ENSMUSG00000073016 ENSMUST00000087867 Uprt protein_coding Interval_53686 chr14 60883619 60883809 + 0 NA intron (ENSMUSG00000021993.10, intron 18 of 19) protein_coding-intron (ENSMUSG00000021993.10, intron 18 of 18) 99132 ENSMUSG00000021993.10 ENSMUSG00000021993 ENSMUST00000223709 Mipep protein_coding Interval_5130 chr1 85898726 85899746 + 0 NA intron (ENSMUSG00000026223.15, intron 1 of 4) protein_coding-intron (ENSMUSG00000026223.15, intron 1 of 5) 4617 ENSMUSG00000026223.15 ENSMUSG00000026223 ENSMUST00000139837 Itm2c protein_coding Interval_133707 chr6 9135894 9136130 + 0 NA intron (ENSMUSG00000046178.3, intron 2 of 2) protein_coding-intron (ENSMUSG00000046178.3, intron 1 of 1) -10754 ENSMUSG00000107851.1 ENSMUSG00000107851 ENSMUST00000203681 Gm35736 processed_pseudogene Interval_89116 chr2 16706160 16706647 + 0 NA intron (ENSMUSG00000026748.13, intron 10 of 13) protein_coding-intron (ENSMUSG00000026748.13, intron 10 of 13) 67707 ENSMUSG00000026748.13 ENSMUSG00000026748 ENSMUST00000126173 Plxdc2 protein_coding Interval_148910 chr7 89980116 89981611 + 0 NA promoter-TSS (ENSMUSG00000030619.10) protein_coding-promoter-TSS (ENSMUSG00000030619.10) 113 ENSMUSG00000030619.10 ENSMUSG00000030619 ENSMUST00000157001 Eed protein_coding Interval_86440 chr19 40531429 40532181 + 0 NA Intergenic Intergenic 29253 ENSMUSG00000096592.1 ENSMUSG00000096592 ENSMUST00000120920 Gm15801 processed_pseudogene Interval_75606 chr17 69256611 69256946 + 0 NA intron (ENSMUSG00000024044.19, intron 9 of 21) protein_coding-intron (ENSMUSG00000024044.19, intron 9 of 21) 20430 ENSMUSG00000100572.1 ENSMUSG00000100572 ENSMUST00000187090 2410021H03Rik antisense Interval_7465 chr1 131577534 131577909 + 0 NA Intergenic Intergenic -22002 ENSMUSG00000026432.7 ENSMUSG00000026432 ENSMUST00000190410 Avpr1b protein_coding Interval_130344 chr5 126257697 126258253 + 0 NA Intergenic Intergenic 131679 ENSMUSG00000094875.1 ENSMUSG00000094875 ENSMUST00000178061 Gm23151 snRNA Interval_140748 chr6 121028168 121028638 + 0 NA TTS (ENSMUSG00000051586.17) protein_coding-TTS (ENSMUSG00000051586.17) -36193 ENSMUSG00000097011.2 ENSMUSG00000097011 ENSMUST00000203697 Gm4651 processed_transcript Interval_168464 chr9 81340213 81340465 + 0 NA Intergenic Intergenic -115058 ENSMUSG00000098429.1 ENSMUSG00000098429 ENSMUST00000184676 Gm27226 lincRNA Interval_5463 chr1 89039378 89039682 + 0 NA Intergenic Intergenic -9444 ENSMUSG00000099544.1 ENSMUSG00000099544 ENSMUST00000190713 Gm18699 processed_pseudogene Interval_154591 chr8 21775688 21776673 + 0 NA promoter-TSS (ENSMUSG00000044748.8) protein_coding-promoter-TSS (ENSMUSG00000044748.8) -419 ENSMUSG00000044748.8 ENSMUSG00000044748 ENSMUST00000051017 Defb1 protein_coding Interval_31499 chr11 101037290 101037894 + 0 NA intron (ENSMUSG00000019302.16, intron 11 of 21) protein_coding-intron (ENSMUSG00000019302.16, intron 11 of 21) 7252 ENSMUSG00000098415.1 ENSMUSG00000098415 ENSMUST00000185166 Mir6928 miRNA Interval_160515 chr8 110201484 110202198 + 0 NA Intergenic Intergenic -13824 ENSMUSG00000046441.5 ENSMUSG00000046441 ENSMUST00000056972 Cmtr2 protein_coding Interval_120133 chr4 142869424 142870020 + 0 NA intron (ENSMUSG00000110067.2, intron 1 of 1) protein_coding-intron (ENSMUSG00000110067.2, intron 1 of 2) 78914 ENSMUSG00000103678.1 ENSMUSG00000103678 ENSMUST00000193751 Gm37624 TEC Interval_13521 chr10 19078281 19078529 + 0 NA Intergenic Intergenic 8773 ENSMUSG00000110938.1 ENSMUSG00000110938 ENSMUST00000217047 1700124M09Rik lincRNA Interval_136507 chr6 55037633 55039315 + 0 NA intron (ENSMUSG00000029777.10, intron 1 of 16) protein_coding-intron (ENSMUSG00000029777.10, intron 1 of 16) -9589 ENSMUSG00000029777.10 ENSMUSG00000029777 ENSMUST00000203334 Gars protein_coding Interval_11743 chr1 185098694 185099633 + 0 NA exon (ENSMUSG00000104461.1, exon 3 of 3) lincRNA-exon (ENSMUSG00000104461.1, exon 3 of 3) 7172 ENSMUSG00000104461.1 ENSMUSG00000104461 ENSMUST00000195649 Gm37662 lincRNA Interval_160798 chr8 112404241 112404562 + 0 NA Intergenic Intergenic 165174 ENSMUSG00000098075.1 ENSMUSG00000098075 ENSMUST00000182027 Gm26994 antisense Interval_154698 chr8 22661488 22661890 + 0 NA promoter-TSS (ENSMUSG00000031537.15) protein_coding-promoter-TSS (ENSMUSG00000031537.15) -8254 ENSMUSG00000031536.6 ENSMUSG00000031536 ENSMUST00000210950 Polb protein_coding Interval_173450 chrX 93980202 93980985 + 0 NA TTS (ENSMUSG00000083114.1) processed_pseudogene-TTS (ENSMUSG00000083114.1) 1876 ENSMUSG00000083114.1 ENSMUSG00000083114 ENSMUST00000117760 Gm14790 processed_pseudogene Interval_102293 chr3 20833390 20834213 + 0 NA Intergenic Intergenic 14180 ENSMUSG00000102807.1 ENSMUSG00000102807 ENSMUST00000194795 Gm37480 TEC Interval_151274 chr7 120597385 120598347 + 0 NA exon (ENSMUSG00000044141.8, exon 1 of 1) processed_pseudogene-exon (ENSMUSG00000044141.8, exon 1 of 1) 241 ENSMUSG00000044141.8 ENSMUSG00000044141 ENSMUST00000123576 E130201H02Rik processed_pseudogene Interval_17909 chr10 80754903 80755782 + 0 NA promoter-TSS (ENSMUSG00000061589.14) protein_coding-promoter-TSS (ENSMUSG00000061589.14) 13645 ENSMUSG00000075558.3 ENSMUSG00000075558 ENSMUST00000105760 Gm17151 antisense Interval_89375 chr2 20146463 20147367 + 0 NA intron (ENSMUSG00000036617.17, intron 2 of 7) protein_coding-intron (ENSMUSG00000036617.17, intron 2 of 7) 89149 ENSMUSG00000081128.1 ENSMUSG00000081128 ENSMUST00000120816 Gm13328 processed_pseudogene Interval_169673 chr9 100201143 100201392 + 0 NA Intergenic Intergenic -27121 ENSMUSG00000103407.1 ENSMUSG00000103407 ENSMUST00000192569 4930540E01Rik TEC Interval_78706 chr18 18243795 18244333 + 0 NA promoter-TSS (ENSMUSG00000117574.1) lincRNA-promoter-TSS (ENSMUSG00000117574.1) 93 ENSMUSG00000117574.1 ENSMUSG00000117574 ENSMUST00000234831 Gm50084 lincRNA Interval_102238 chr3 19810260 19810929 + 0 NA Intergenic Intergenic 41721 ENSMUSG00000106182.1 ENSMUSG00000106182 ENSMUST00000197778 Gm7442 processed_pseudogene Interval_60648 chr15 75908813 75910804 + 0 NA promoter-TSS (ENSMUSG00000055762.16) protein_coding-promoter-TSS (ENSMUSG00000055762.16) 73 ENSMUSG00000103906.1 ENSMUSG00000103906 ENSMUST00000192937 Tigd5 protein_coding Interval_102278 chr3 20366512 20367435 + 0 NA intron (ENSMUSG00000054988.9, intron 1 of 2) protein_coding-intron (ENSMUSG00000054988.9, intron 1 of 1) 151 ENSMUSG00000054988.9 ENSMUSG00000054988 ENSMUST00000163776 Agtr1b protein_coding Interval_154763 chr8 23187501 23187951 + 0 NA intron (ENSMUSG00000031545.6, intron 2 of 6) protein_coding-intron (ENSMUSG00000031545.6, intron 2 of 12) 20619 ENSMUSG00000031545.6 ENSMUSG00000031545 ENSMUST00000209507 Gpat4 protein_coding Interval_122759 chr5 25181495 25181695 + 0 NA promoter-TSS (ENSMUSG00000028938.9) protein_coding-promoter-TSS (ENSMUSG00000028938.9) 93 ENSMUSG00000028938.9 ENSMUSG00000028938 ENSMUST00000114965 Galntl5 protein_coding Interval_44130 chr13 41090995 41091747 + 0 NA promoter-TSS (ENSMUSG00000114385.1) processed_pseudogene-promoter-TSS (ENSMUSG00000114385.1) -59 ENSMUSG00000114385.1 ENSMUSG00000114385 ENSMUST00000225870 Gm48344 processed_pseudogene Interval_32183 chr11 105977536 105977816 + 0 NA intron (ENSMUSG00000020681.14, intron 11 of 19) protein_coding-intron (ENSMUSG00000020681.14, intron 15 of 24) 1071 ENSMUSG00000020681.14 ENSMUSG00000020681 ENSMUST00000151657 Ace protein_coding Interval_50137 chr14 8213621 8214732 + 0 NA promoter-TSS (ENSMUSG00000021752.13) protein_coding-promoter-TSS (ENSMUSG00000021752.13) -326 ENSMUSG00000021752.13 ENSMUSG00000021752 ENSMUST00000170111 Kctd6 protein_coding Interval_126411 chr5 88217209 88217729 + 0 NA Intergenic Intergenic 6810 ENSMUSG00000105576.1 ENSMUSG00000105576 ENSMUST00000198881 Gm42164 processed_pseudogene Interval_103313 chr3 38484273 38485403 + 0 NA promoter-TSS (ENSMUSG00000044864.16) protein_coding-promoter-TSS (ENSMUSG00000044864.16) -1747 ENSMUSG00000044864.16 ENSMUSG00000044864 ENSMUST00000127837 Ankrd50 protein_coding Interval_115050 chr4 88876565 88877606 + 0 NA Intergenic Intergenic 3116 ENSMUSG00000045364.2 ENSMUSG00000045364 ENSMUST00000056014 Ifne protein_coding Interval_15116 chr10 42657768 42658592 + 0 NA intron (ENSMUSG00000038280.12, intron 2 of 6) protein_coding-intron (ENSMUSG00000038280.12, intron 2 of 5) -20786 ENSMUSG00000038280.12 ENSMUSG00000038280 ENSMUST00000154048 Ostm1 protein_coding Interval_115359 chr4 98081538 98081817 + 0 NA intron (ENSMUSG00000028565.18, intron 9 of 9) protein_coding-intron (ENSMUSG00000028565.18, intron 8 of 9) 68584 ENSMUSG00000081096.2 ENSMUSG00000081096 ENSMUST00000120186 Gm12691 transcribed_processed_pseudogene Interval_69860 chr16 97644339 97645019 + 0 NA Intergenic Intergenic -77342 ENSMUSG00000000385.8 ENSMUSG00000000385 ENSMUST00000232141 Tmprss2 protein_coding Interval_60253 chr15 70101994 70103258 + 0 NA Intergenic Intergenic -37957 ENSMUSG00000116398.1 ENSMUSG00000116398 ENSMUST00000231025 Gm5216 processed_pseudogene Interval_46849 chr13 72413845 72415149 + 0 NA Intergenic Intergenic 40843 ENSMUSG00000094989.1 ENSMUSG00000094989 ENSMUST00000075549 Rpl9-ps4 processed_pseudogene Interval_73378 chr17 36869724 36870350 + 0 NA exon (ENSMUSG00000073400.6, exon 1 of 7) protein_coding-exon (ENSMUSG00000073400.6, exon 1 of 7) 463 ENSMUSG00000073400.6 ENSMUSG00000073400 ENSMUST00000060524 Trim10 protein_coding Interval_137987 chr6 83992348 83992563 + 0 NA Intergenic Intergenic 19666 ENSMUSG00000107682.1 ENSMUSG00000107682 ENSMUST00000203143 Gm33024 antisense Interval_55603 chr14 94970968 94971229 + 0 NA Intergenic Intergenic 41397 ENSMUSG00000089384.1 ENSMUSG00000089384 ENSMUST00000158759 Gm24680 snoRNA Interval_79204 chr18 25639363 25640163 + 0 NA intron (ENSMUSG00000024268.16, intron 2 of 5) protein_coding-intron (ENSMUSG00000024268.16, intron 2 of 12) -41309 ENSMUSG00000084537.1 ENSMUSG00000084537 ENSMUST00000122588 Gm25845 misc_RNA Interval_55672 chr14 98805780 98805998 + 0 NA Intergenic Intergenic 91076 ENSMUSG00000098059.1 ENSMUSG00000098059 ENSMUST00000182552 Gm27034 processed_pseudogene Interval_79797 chr18 35152073 35152370 + 0 NA promoter-TSS (ENSMUSG00000037815.7) protein_coding-promoter-TSS (ENSMUSG00000037815.7) 62803 ENSMUSG00000071862.3 ENSMUSG00000071862 ENSMUST00000236680 Lrrtm2 protein_coding Interval_140644 chr6 120288607 120289959 + 0 NA intron (ENSMUSG00000041372.10, intron 1 of 19) protein_coding-intron (ENSMUSG00000041372.10, intron 1 of 19) 5276 ENSMUSG00000041372.10 ENSMUSG00000041372 ENSMUST00000212457 B4galnt3 protein_coding Interval_73182 chr17 35325290 35325921 + 0 NA TTS (ENSMUSG00000079507.10) protein_coding-TTS (ENSMUSG00000079507.10) 5200 ENSMUSG00000079507.10 ENSMUSG00000079507 ENSMUST00000073208 H2-Q1 protein_coding Interval_1776 chr1 33725339 33725569 + 0 NA TTS (ENSMUSG00000004768.14) protein_coding-TTS (ENSMUSG00000004768.14) 5567 ENSMUSG00000004768.14 ENSMUSG00000004768 ENSMUST00000132066 Rab23 protein_coding Interval_109774 chr3 146866350 146866809 + 0 NA intron (ENSMUSG00000036745.15, intron 1 of 20) protein_coding-intron (ENSMUSG00000036745.15, intron 1 of 21) -27232 ENSMUSG00000070343.3 ENSMUSG00000070343 ENSMUST00000084614 Gm10288 processed_pseudogene Interval_41699 chr12 117853134 117853869 + 0 NA intron (ENSMUSG00000021175.15, intron 1 of 6) protein_coding-intron (ENSMUSG00000021175.15, intron 1 of 9) 9613 ENSMUSG00000021175.15 ENSMUSG00000021175 ENSMUST00000177339 Cdca7l protein_coding Interval_49733 chr13 114333831 114334032 + 0 NA intron (ENSMUSG00000021764.8, intron 1 of 3) protein_coding-intron (ENSMUSG00000021764.8, intron 2 of 4) -49550 ENSMUSG00000114707.1 ENSMUSG00000114707 ENSMUST00000224003 Gm47558 TEC Interval_100811 chr2 172660252 172660461 + 0 NA Intergenic Intergenic 109365 ENSMUSG00000028640.11 ENSMUSG00000028640 ENSMUST00000142633 Tfap2c protein_coding Interval_64828 chr16 16224119 16226322 + 0 NA intron (ENSMUSG00000041957.15, intron 1 of 2) protein_coding-intron (ENSMUSG00000041957.15, intron 1 of 12) 11902 ENSMUSG00000041957.15 ENSMUSG00000041957 ENSMUST00000039408 Pkp2 protein_coding Interval_19980 chr10 111641871 111642106 + 0 NA Intergenic Intergenic 7824 ENSMUSG00000112357.1 ENSMUSG00000112357 ENSMUST00000217989 Gm47864 processed_pseudogene Interval_2946 chr1 51466004 51467014 + 0 NA exon (ENSMUSG00000026107.11, exon 7 of 7) protein_coding-exon (ENSMUSG00000026107.11, exon 7 of 7) -7578 ENSMUSG00000101702.1 ENSMUSG00000101702 ENSMUST00000189460 1700072G22Rik lincRNA Interval_83273 chr18 83332082 83332769 + 0 NA Intergenic Intergenic -6541 ENSMUSG00000118333.1 ENSMUSG00000118333 ENSMUST00000236997 4921531P14Rik lincRNA Interval_140888 chr6 122605628 122605857 + 0 NA exon (ENSMUSG00000030117.5, exon 2 of 2) protein_coding-exon (ENSMUSG00000030117.5, exon 2 of 2) 4082 ENSMUSG00000030117.5 ENSMUSG00000030117 ENSMUST00000204882 Gdf3 protein_coding Interval_21448 chr10 128656333 128656666 + 0 NA intron (ENSMUSG00000002578.18, intron 1 of 7) protein_coding-intron (ENSMUSG00000002578.18, intron 1 of 7) 10615 ENSMUSG00000097372.1 ENSMUSG00000097372 ENSMUST00000180875 Gm26876 lincRNA Interval_87904 chr19 57017435 57017982 + 0 NA Intergenic Intergenic -80470 ENSMUSG00000025083.18 ENSMUSG00000025083 ENSMUST00000132851 Afap1l2 protein_coding Interval_19993 chr10 111761610 111762482 + 0 NA intron (ENSMUSG00000112137.1, intron 2 of 3) lincRNA-intron (ENSMUSG00000112137.1, intron 2 of 3) -5732 ENSMUSG00000112706.1 ENSMUSG00000112706 ENSMUST00000219399 Gm46193 processed_pseudogene Interval_81106 chr18 53915573 53916230 + 0 NA intron (ENSMUSG00000073563.3, intron 4 of 12) protein_coding-intron (ENSMUSG00000073563.3, intron 4 of 12) 53713 ENSMUSG00000073563.3 ENSMUSG00000073563 ENSMUST00000236399 Csnk1g3 protein_coding Interval_177 JH792828.1 168967 169442 + 0 NA NA NA NA NA Interval_26494 chr11 58149007 58149754 + 0 NA intron (ENSMUSG00000037275.14, intron 11 of 27) protein_coding-intron (ENSMUSG00000037275.14, intron 11 of 27) 19159 ENSMUSG00000037275.14 ENSMUSG00000037275 ENSMUST00000134953 Gemin5 protein_coding Interval_102658 chr3 29024295 29026141 + 0 NA Intergenic Intergenic -57082 ENSMUSG00000063600.14 ENSMUSG00000063600 ENSMUST00000140288 Egfem1 protein_coding Interval_104655 chr3 69159731 69160084 + 0 NA Intergenic Intergenic 28674 ENSMUSG00000094763.3 ENSMUSG00000094763 ENSMUST00000195406 Gm1647 lincRNA Interval_74253 chr17 47743144 47743436 + 0 NA intron (ENSMUSG00000023990.18, intron 1 of 6) protein_coding-intron (ENSMUSG00000023990.18, intron 1 of 8) 16446 ENSMUSG00000023987.14 ENSMUSG00000023987 ENSMUST00000144955 Pgc protein_coding Interval_77447 chr17 88876593 88876871 + 0 NA Intergenic Intergenic -20110 ENSMUSG00000117566.1 ENSMUSG00000117566 ENSMUST00000234561 Gm9407 processed_pseudogene Interval_46369 chr13 64267166 64267507 + 0 NA TTS (ENSMUSG00000097101.3) antisense-TTS (ENSMUSG00000097101.3) 5222 ENSMUSG00000113603.1 ENSMUSG00000113603 ENSMUST00000221580 Gm47004 TEC Interval_76610 chr17 82396063 82396293 + 0 NA Intergenic Intergenic 14641 ENSMUSG00000117438.1 ENSMUSG00000117438 ENSMUST00000234808 Rpsa-ps7 processed_pseudogene Interval_600 chr1 8581349 8582785 + 0 NA intron (ENSMUSG00000025909.16, intron 14 of 20) protein_coding-intron (ENSMUSG00000025909.16, intron 10 of 16) 6657 ENSMUSG00000093970.1 ENSMUSG00000093970 ENSMUST00000103887 Gm23358 miRNA Interval_81117 chr18 54126016 54126337 + 0 NA Intergenic Intergenic -94868 ENSMUSG00000117769.1 ENSMUSG00000117769 ENSMUST00000237377 Gm8594 processed_pseudogene Interval_27302 chr11 65768890 65769149 + 0 NA intron (ENSMUSG00000033352.11, intron 1 of 6) protein_coding-intron (ENSMUSG00000033352.11, intron 1 of 10) 19267 ENSMUSG00000033352.11 ENSMUSG00000033352 ENSMUST00000138093 Map2k4 protein_coding Interval_140849 chr6 122323241 122323502 + 0 NA exon (ENSMUSG00000040669.14, exon 7 of 14) protein_coding-exon (ENSMUSG00000040669.14, exon 7 of 14) 14372 ENSMUSG00000007458.14 ENSMUSG00000007458 ENSMUST00000123093 M6pr protein_coding Interval_102018 chr3 15055009 15057456 + 0 NA Intergenic Intergenic -81680 ENSMUSG00000098186.1 ENSMUSG00000098186 ENSMUST00000182302 Gm7132 processed_pseudogene Interval_131705 chr5 139414677 139415210 + 0 NA TTS (ENSMUSG00000053553.11) protein_coding-TTS (ENSMUSG00000053553.11) -8337 ENSMUSG00000053647.4 ENSMUSG00000053647 ENSMUST00000173364 Gper1 protein_coding Interval_126113 chr5 77481605 77482970 + 0 NA Intergenic Intergenic -3440 ENSMUSG00000106985.1 ENSMUSG00000106985 ENSMUST00000201899 Gm42761 lincRNA Interval_5805 chr1 92038158 92038370 + 0 NA intron (ENSMUSG00000026313.16, intron 4 of 4) protein_coding-intron (ENSMUSG00000026313.16, intron 2 of 25) -16167 ENSMUSG00000102565.1 ENSMUSG00000102565 ENSMUST00000192836 Gm37036 TEC Interval_120667 chr4 149990478 149991665 + 0 NA intron (ENSMUSG00000028980.14, intron 3 of 4) protein_coding-intron (ENSMUSG00000028980.14, intron 3 of 4) 10194 ENSMUSG00000028980.14 ENSMUSG00000028980 ENSMUST00000152907 H6pd protein_coding Interval_166323 chr9 58329964 58330722 + 0 NA Intergenic Intergenic -17157 ENSMUSG00000032334.10 ENSMUSG00000032334 ENSMUST00000061799 Loxl1 protein_coding Interval_9858 chr1 163311698 163312647 + 0 NA intron (ENSMUSG00000026586.16, intron 1 of 1) protein_coding-intron (ENSMUSG00000026586.16, intron 1 of 3) -3105 ENSMUSG00000103195.1 ENSMUSG00000103195 ENSMUST00000192190 Gm37644 TEC Interval_50899 chr14 20651386 20651664 + 0 NA promoter-TSS (ENSMUSG00000068697.7) protein_coding-promoter-TSS (ENSMUSG00000068697.7) 183 ENSMUSG00000068697.7 ENSMUSG00000068697 ENSMUST00000224436 Myoz1 protein_coding Interval_93518 chr2 73736495 73736696 + 0 NA intron (ENSMUSG00000056486.18, intron 1 of 9) protein_coding-intron (ENSMUSG00000056486.18, intron 1 of 12) -72567 ENSMUSG00000081062.1 ENSMUSG00000081062 ENSMUST00000118445 Gm13640 processed_pseudogene Interval_56227 chr14 114014104 114014973 + 0 NA Intergenic Intergenic 112511 ENSMUSG00000115269.1 ENSMUSG00000115269 ENSMUST00000226804 Gm5209 processed_pseudogene Interval_52489 chr14 46921509 46921738 + 0 NA intron (ENSMUSG00000021838.17, intron 3 of 12) protein_coding-intron (ENSMUSG00000021838.17, intron 2 of 12) 28103 ENSMUSG00000114996.1 ENSMUSG00000114996 ENSMUST00000228844 Gm48958 TEC Interval_167261 chr9 66834240 66835542 + 0 NA promoter-TSS (ENSMUSG00000053040.13) protein_coding-promoter-TSS (ENSMUSG00000053040.13) -165 ENSMUSG00000053040.13 ENSMUSG00000053040 ENSMUST00000057261 Aph1c protein_coding Interval_43002 chr13 22825819 22826254 + 0 NA exon (ENSMUSG00000061296.2, exon 3 of 3) protein_coding-exon (ENSMUSG00000061296.2, exon 3 of 3) 5312 ENSMUSG00000061296.2 ENSMUSG00000061296 ENSMUST00000072044 Vmn1r210 protein_coding Interval_124645 chr5 52782589 52783531 + 0 NA promoter-TSS (ENSMUSG00000029179.14) protein_coding-promoter-TSS (ENSMUSG00000029179.14) -56 ENSMUSG00000029179.14 ENSMUSG00000029179 ENSMUST00000143745 Zcchc4 protein_coding Interval_61349 chr15 80983587 80984665 + 0 NA intron (ENSMUSG00000042303.19, intron 1 of 4) protein_coding-intron (ENSMUSG00000042303.19, intron 1 of 4) 6237 ENSMUSG00000042303.19 ENSMUSG00000042303 ENSMUST00000156783 Sgsm3 protein_coding Interval_85616 chr19 29094336 29094566 + 0 NA Intergenic Intergenic -4196 ENSMUSG00000118320.1 ENSMUSG00000118320 ENSMUST00000236843 Gm50425 processed_pseudogene Interval_69943 chr17 3376143 3376374 + 0 NA intron (ENSMUSG00000023800.15, intron 1 of 26) protein_coding-intron (ENSMUSG00000023800.15, intron 1 of 26) -29191 ENSMUSG00000115330.1 ENSMUSG00000115330 ENSMUST00000226386 Gm49221 processed_pseudogene Interval_55681 chr14 98974281 98974951 + 0 NA Intergenic Intergenic 19702 ENSMUSG00000060377.4 ENSMUSG00000060377 ENSMUST00000081987 Rpl36a-ps1 protein_coding Interval_106458 chr3 96479310 96479922 + 0 NA Intergenic Intergenic -5545 ENSMUSG00000098392.1 ENSMUSG00000098392 ENSMUST00000183561 Gm28001 rRNA Interval_59981 chr15 62569396 62569657 + 0 NA intron (ENSMUSG00000115862.1, intron 1 of 3) lincRNA-intron (ENSMUSG00000115862.1, intron 1 of 3) 1551 ENSMUSG00000115862.1 ENSMUSG00000115862 ENSMUST00000230029 Gm41333 lincRNA Interval_40622 chr12 106080707 106081453 + 0 NA Intergenic Intergenic -3290 ENSMUSG00000113427.1 ENSMUSG00000113427 ENSMUST00000222979 Gm46378 lincRNA Interval_133151 chr5 150207837 150208244 + 0 NA intron (ENSMUSG00000056602.12, intron 1 of 3) protein_coding-intron (ENSMUSG00000056602.12, intron 2 of 4) -35823 ENSMUSG00000107082.1 ENSMUSG00000107082 ENSMUST00000201709 Gm36378 processed_pseudogene Interval_123853 chr5 35971993 35972409 + 0 NA intron (ENSMUSG00000029094.12, intron 9 of 14) protein_coding-intron (ENSMUSG00000029094.12, intron 9 of 16) -11987 ENSMUSG00000029094.12 ENSMUSG00000029094 ENSMUST00000201482 Afap1 protein_coding Interval_90116 chr2 28222147 28223283 + 0 NA intron (ENSMUSG00000026833.18, intron 5 of 5) protein_coding-intron (ENSMUSG00000026833.18, intron 5 of 5) 29723 ENSMUSG00000026833.18 ENSMUSG00000026833 ENSMUST00000028177 Olfm1 protein_coding Interval_116379 chr4 110709486 110709677 + 0 NA intron (ENSMUSG00000061298.14, intron 3 of 12) protein_coding-intron (ENSMUSG00000061298.14, intron 3 of 12) -195849 ENSMUSG00000082348.1 ENSMUSG00000082348 ENSMUST00000121546 Gm12807 processed_pseudogene Interval_41137 chr12 111429259 111431023 + 0 NA intron (ENSMUSG00000097081.1, intron 1 of 1) protein_coding-intron (ENSMUSG00000021280.9, intron 13 of 13) 805 ENSMUSG00000097081.1 ENSMUSG00000097081 ENSMUST00000181085 Gm10425 antisense Interval_11341 chr1 181069912 181070144 + 0 NA intron (ENSMUSG00000102219.1, intron 1 of 2) unprocessed_pseudogene-intron (ENSMUSG00000102219.1, intron 1 of 2) 2432 ENSMUSG00000102219.1 ENSMUSG00000102219 ENSMUST00000193613 Gm6606 unprocessed_pseudogene Interval_34826 chr12 12316323 12316863 + 0 NA intron (ENSMUSG00000020589.17, intron 3 of 12) protein_coding-intron (ENSMUSG00000020589.17, intron 2 of 11) 54410 ENSMUSG00000020589.17 ENSMUSG00000020589 ENSMUST00000222357 Fam49a protein_coding Interval_139664 chr6 106351554 106351752 + 0 NA intron (ENSMUSG00000064293.14, intron 3 of 9) protein_coding-intron (ENSMUSG00000064293.14, intron 3 of 15) -303850 ENSMUSG00000064293.14 ENSMUSG00000064293 ENSMUST00000142626 Cntn4 protein_coding Interval_32023 chr11 104530241 104530642 + 0 NA intron (ENSMUSG00000020687.13, intron 4 of 18) protein_coding-intron (ENSMUSG00000020687.13, intron 4 of 18) 20179 ENSMUSG00000020687.13 ENSMUSG00000020687 ENSMUST00000135303 Cdc27 protein_coding Interval_26952 chr11 61799904 61800131 + 0 NA exon (ENSMUSG00000004798.14, exon 18 of 27) protein_coding-exon (ENSMUSG00000004798.14, exon 18 of 27) 4004 ENSMUSG00000004798.14 ENSMUSG00000004798 ENSMUST00000157049 Ulk2 protein_coding Interval_28419 chr11 75749402 75750833 + 0 NA intron (ENSMUSG00000020849.13, intron 1 of 3) protein_coding-intron (ENSMUSG00000020849.13, intron 1 of 5) -1487 ENSMUSG00000020849.13 ENSMUSG00000020849 ENSMUST00000155057 Ywhae protein_coding Interval_164573 chr9 39085883 39086302 + 0 NA intron (ENSMUSG00000111781.1, intron 3 of 4) unprocessed_pseudogene-intron (ENSMUSG00000111781.1, intron 3 of 4) -7205 ENSMUSG00000048501.3 ENSMUSG00000048501 ENSMUST00000056499 Olfr938 protein_coding Interval_148510 chr7 81954206 81954650 + 0 NA Intergenic Intergenic -11282 ENSMUSG00000089111.1 ENSMUSG00000089111 ENSMUST00000158486 Gm25907 snoRNA Interval_129653 chr5 121541197 121541478 + 0 NA intron (ENSMUSG00000072647.6, intron 1 of 14) protein_coding-intron (ENSMUSG00000029454.15, intron 1 of 13) 3894 ENSMUSG00000029454.15 ENSMUSG00000029454 ENSMUST00000131914 Mapkapk5 protein_coding Interval_119045 chr4 135205379 135206711 + 0 NA Intergenic Intergenic 53107 ENSMUSG00000070691.10 ENSMUSG00000070691 ENSMUST00000127109 Runx3 protein_coding Interval_141040 chr6 124567083 124567678 + 0 NA Intergenic Intergenic -2914 ENSMUSG00000098470.1 ENSMUSG00000098470 ENSMUST00000184647 C1rb protein_coding Interval_93378 chr2 72508132 72509441 + 0 NA Intergenic Intergenic 32533 ENSMUSG00000055612.15 ENSMUSG00000055612 ENSMUST00000137880 Cdca7 protein_coding Interval_2594 chr1 41139568 41141148 + 0 NA Intergenic Intergenic 40894 ENSMUSG00000104072.1 ENSMUSG00000104072 ENSMUST00000194002 4930448I06Rik lincRNA Interval_71661 chr17 25213714 25213946 + 0 NA TTS (ENSMUSG00000015127.14) protein_coding-TTS (ENSMUSG00000015127.14) 3145 ENSMUSG00000015127.14 ENSMUSG00000015127 ENSMUST00000161679 Unkl protein_coding Interval_137322 chr6 71322467 71323190 + 0 NA promoter-TSS (ENSMUSG00000053044.8) protein_coding-promoter-TSS (ENSMUSG00000053044.8) 40 ENSMUSG00000053044.8 ENSMUSG00000053044 ENSMUST00000065248 Cd8b1 protein_coding Interval_89702 chr2 24784243 24784730 + 0 NA Intergenic Intergenic 79437 ENSMUSG00000036893.17 ENSMUSG00000036893 ENSMUST00000150379 Ehmt1 protein_coding Interval_84094 chr19 7175874 7176750 + 0 NA intron (ENSMUSG00000036278.7, intron 3 of 10) protein_coding-intron (ENSMUSG00000036278.7, intron 3 of 10) 29463 ENSMUSG00000024767.11 ENSMUSG00000024767 ENSMUST00000123743 Otub1 protein_coding Interval_74580 chr17 53520629 53521086 + 0 NA intron (ENSMUSG00000044957.3, intron 1 of 2) protein_coding-intron (ENSMUSG00000044957.3, intron 1 of 2) 18594 ENSMUSG00000044957.3 ENSMUSG00000044957 ENSMUST00000056198 Pp2d1 protein_coding Interval_78950 chr18 22439016 22439471 + 0 NA intron (ENSMUSG00000045215.17, intron 5 of 11) protein_coding-intron (ENSMUSG00000045215.17, intron 6 of 12) 94997 ENSMUSG00000045215.17 ENSMUSG00000045215 ENSMUST00000097655 Asxl3 protein_coding Interval_59502 chr15 54702142 54703276 + 0 NA Intergenic Intergenic -42993 ENSMUSG00000037362.8 ENSMUSG00000037362 ENSMUST00000050027 Ccn3 protein_coding Interval_109830 chr3 148678671 148679643 + 0 NA Intergenic Intergenic 26097 ENSMUSG00000105934.1 ENSMUSG00000105934 ENSMUST00000196420 Gm43575 processed_pseudogene Interval_147856 chr7 74353897 74355399 + 0 NA intron (ENSMUSG00000025790.14, intron 2 of 2) protein_coding-intron (ENSMUSG00000025790.14, intron 3 of 9) -7417 ENSMUSG00000025790.14 ENSMUSG00000025790 ENSMUST00000129292 Slco3a1 protein_coding Interval_169662 chr9 99875075 99876627 + 0 NA promoter-TSS (ENSMUSG00000053747.9) protein_coding-promoter-TSS (ENSMUSG00000053747.9) -196 ENSMUSG00000053747.9 ENSMUSG00000053747 ENSMUST00000183065 Sox14 protein_coding Interval_106637 chr3 97970972 97971817 + 0 NA Intergenic Intergenic 41221 ENSMUSG00000074388.3 ENSMUSG00000074388 ENSMUST00000098828 Gm5544 lincRNA Interval_173360 chrX 84545144 84546229 + 0 NA intron (ENSMUSG00000045103.19, intron 24 of 50) protein_coding-intron (ENSMUSG00000045103.19, intron 52 of 78) -334201 ENSMUSG00000084281.1 ENSMUSG00000084281 ENSMUST00000122197 Gm14770 processed_pseudogene Interval_77525 chr17 90796259 90797234 + 0 NA intron (ENSMUSG00000024109.18, intron 1 of 12) protein_coding-intron (ENSMUSG00000024109.18, intron 4 of 20) -2740 ENSMUSG00000092549.1 ENSMUSG00000092549 ENSMUST00000173765 Gm20491 processed_pseudogene Interval_127612 chr5 105776686 105778083 + 0 NA intron (ENSMUSG00000046079.16, intron 1 of 2) protein_coding-intron (ENSMUSG00000046079.16, intron 2 of 2) 20329 ENSMUSG00000067058.7 ENSMUSG00000067058 ENSMUST00000132586 Rps15a-ps5 processed_pseudogene Interval_42917 chr13 21362548 21364024 + 0 NA promoter-TSS (ENSMUSG00000036721.14) protein_coding-promoter-TSS (ENSMUSG00000036721.14) 466 ENSMUSG00000036721.14 ENSMUSG00000036721 ENSMUST00000099720 Zscan12 protein_coding Interval_97618 chr2 140713765 140714049 + 0 NA intron (ENSMUSG00000068205.14, intron 3 of 3) protein_coding-intron (ENSMUSG00000068205.14, intron 3 of 17) -42457 ENSMUSG00000051379.12 ENSMUSG00000051379 ENSMUST00000056760 Flrt3 protein_coding Interval_144763 chr7 28091657 28092037 + 0 NA exon (ENSMUSG00000047730.17, exon 7 of 20) protein_coding-exon (ENSMUSG00000047730.17, exon 7 of 20) -21980 ENSMUSG00000047730.17 ENSMUSG00000047730 ENSMUST00000131090 Fcgbp protein_coding Interval_52777 chr14 49800556 49801684 + 0 NA Intergenic Intergenic -4729 ENSMUSG00000115212.1 ENSMUSG00000115212 ENSMUST00000228347 Gm8417 transcribed_unprocessed_pseudogene Interval_118723 chr4 133380705 133381766 + 0 NA intron (ENSMUSG00000028854.9, intron 1 of 11) protein_coding-intron (ENSMUSG00000028854.9, intron 1 of 11) 11459 ENSMUSG00000092745.1 ENSMUSG00000092745 ENSMUST00000175004 Mir5122 miRNA Interval_78189 chr18 9989884 9990667 + 0 NA intron (ENSMUSG00000024287.8, intron 6 of 8) protein_coding-intron (ENSMUSG00000024287.8, intron 18 of 20) 3986 ENSMUSG00000024287.8 ENSMUSG00000024287 ENSMUST00000234111 Thoc1 protein_coding Interval_95617 chr2 112842855 112843052 + 0 NA intron (ENSMUSG00000057378.15, intron 31 of 103) protein_coding-intron (ENSMUSG00000057378.15, intron 31 of 102) -186405 ENSMUSG00000057378.15 ENSMUSG00000057378 ENSMUST00000208135 Ryr3 protein_coding Interval_54389 chr14 68168977 68169161 + 0 NA Intergenic Intergenic -1995 ENSMUSG00000087772.1 ENSMUSG00000087772 ENSMUST00000157147 Gm22319 snoRNA Interval_125732 chr5 73650749 73652089 + 0 NA promoter-TSS (ENSMUSG00000029155.16) protein_coding-promoter-TSS (ENSMUSG00000029155.16) -3828 ENSMUSG00000106773.1 ENSMUSG00000106773 ENSMUST00000201845 Gm43799 TEC Interval_65791 chr16 28879073 28880560 + 0 NA intron (ENSMUSG00000051065.9, intron 1 of 1) protein_coding-intron (ENSMUSG00000051065.9, intron 1 of 1) -43449 ENSMUSG00000051065.9 ENSMUSG00000051065 ENSMUST00000232571 Mb21d2 protein_coding Interval_157917 chr8 75781130 75781333 + 0 NA intron (ENSMUSG00000031620.16, intron 12 of 13) protein_coding-intron (ENSMUSG00000031620.16, intron 11 of 12) -68035 ENSMUSG00000101431.1 ENSMUSG00000101431 ENSMUST00000120430 Gm7901 processed_pseudogene Interval_112577 chr4 43350741 43350997 + 0 NA intron (ENSMUSG00000028457.18, intron 15 of 28) protein_coding-intron (ENSMUSG00000028457.18, intron 16 of 29) -63827 ENSMUSG00000035969.15 ENSMUSG00000035969 ENSMUST00000123447 Rusc2 protein_coding Interval_17367 chr10 76096393 76097457 + 0 NA intron (ENSMUSG00000020226.9, intron 5 of 14) protein_coding-intron (ENSMUSG00000020226.9, intron 5 of 14) 14036 ENSMUSG00000020226.9 ENSMUSG00000020226 ENSMUST00000120757 Slc5a4b protein_coding Interval_13716 chr10 21347204 21347415 + 0 NA exon (ENSMUSG00000019977.16, exon 9 of 18) protein_coding-exon (ENSMUSG00000019977.16, exon 9 of 18) -5252 ENSMUSG00000112654.1 ENSMUSG00000112654 ENSMUST00000218108 4930455C13Rik antisense Interval_121802 chr5 8391799 8392566 + 0 NA Intergenic Intergenic 30487 ENSMUSG00000002297.16 ENSMUSG00000002297 ENSMUST00000198785 Dbf4 protein_coding Interval_38304 chr12 76996600 76996816 + 0 NA intron (ENSMUSG00000112857.1, intron 2 of 3) lincRNA-intron (ENSMUSG00000112857.1, intron 2 of 3) 24248 ENSMUSG00000112857.1 ENSMUSG00000112857 ENSMUST00000219581 Gm35041 lincRNA Interval_7767 chr1 133530762 133531199 + 0 NA TTS (ENSMUSG00000101004.1) processed_pseudogene-TTS (ENSMUSG00000101004.1) 1501 ENSMUSG00000101004.1 ENSMUSG00000101004 ENSMUST00000188004 Gm8596 processed_pseudogene Interval_51301 chr14 25847561 25848205 + 0 NA intron (ENSMUSG00000021866.15, intron 1 of 13) protein_coding-intron (ENSMUSG00000021866.15, intron 1 of 14) 5700 ENSMUSG00000021866.15 ENSMUSG00000021866 ENSMUST00000133547 Anxa11 protein_coding Interval_76628 chr17 82956070 82956796 + 0 NA exon (ENSMUSG00000117472.1, exon 2 of 3) processed_pseudogene-exon (ENSMUSG00000117472.1, exon 2 of 3) 437 ENSMUSG00000117472.1 ENSMUSG00000117472 ENSMUST00000234284 Gm4601 processed_pseudogene Interval_101489 chr2 181863903 181865038 + 0 NA exon (ENSMUSG00000038628.8, exon 1 of 3) protein_coding-exon (ENSMUSG00000038628.8, exon 1 of 3) 110 ENSMUSG00000038628.8 ENSMUSG00000038628 ENSMUST00000153214 Polr3k protein_coding Interval_125651 chr5 73047447 73048173 + 0 NA promoter-TSS (ENSMUSG00000070733.13) protein_coding-promoter-TSS (ENSMUSG00000070733.13) -2656 ENSMUSG00000107171.1 ENSMUSG00000107171 ENSMUST00000202292 Gm42572 TEC Interval_63880 chr16 4212891 4214715 + 0 NA promoter-TSS (ENSMUSG00000022521.10) protein_coding-promoter-TSS (ENSMUSG00000022521.10) -16498 ENSMUSG00000089645.3 ENSMUSG00000089645 ENSMUST00000161633 Gm5766 transcribed_processed_pseudogene Interval_78249 chr18 10725331 10726835 + 0 NA promoter-TSS (ENSMUSG00000024294.14) protein_coding-promoter-TSS (ENSMUSG00000024294.14) -441 ENSMUSG00000024294.14 ENSMUSG00000024294 ENSMUST00000150000 Mib1 protein_coding Interval_91214 chr2 35985873 35986270 + 0 NA Intergenic Intergenic -33657 ENSMUSG00000026885.13 ENSMUSG00000026885 ENSMUST00000162172 Ttll11 protein_coding Interval_155970 chr8 41329916 41330818 + 0 NA intron (ENSMUSG00000031592.10, intron 36 of 38) protein_coding-intron (ENSMUSG00000031592.10, intron 35 of 37) 44406 ENSMUSG00000031591.14 ENSMUSG00000031591 ENSMUST00000143057 Asah1 protein_coding Interval_163519 chr9 21826974 21827243 + 0 NA intron (ENSMUSG00000032198.9, intron 8 of 11) protein_coding-intron (ENSMUSG00000032198.9, intron 23 of 48) -8402 ENSMUSG00000047822.8 ENSMUSG00000047822 ENSMUST00000058777 Angptl8 protein_coding Interval_117257 chr4 121042471 121044126 + 0 NA intron (ENSMUSG00000028626.5, intron 4 of 6) protein_coding-intron (ENSMUSG00000028626.5, intron 4 of 31) 3550 ENSMUSG00000028626.5 ENSMUSG00000028626 ENSMUST00000140119 Col9a2 protein_coding Interval_33942 chr11 119565750 119566491 + 0 NA intron (ENSMUSG00000087675.1, intron 2 of 3) processed_transcript-intron (ENSMUSG00000087675.1, intron 2 of 3) 17490 ENSMUSG00000087675.1 ENSMUSG00000087675 ENSMUST00000135630 Gm11762 processed_transcript Interval_26946 chr11 61751571 61752111 + 0 NA intron (ENSMUSG00000020528.14, intron 4 of 10) protein_coding-intron (ENSMUSG00000020528.14, intron 5 of 11) 10247 ENSMUSG00000020528.14 ENSMUSG00000020528 ENSMUST00000123575 Prpsap2 protein_coding Interval_173152 chrX 73637117 73637401 + 0 NA Intergenic Intergenic -2160 ENSMUSG00000031383.8 ENSMUSG00000031383 ENSMUST00000019701 Dusp9 protein_coding Interval_144882 chr7 28739809 28740269 + 0 NA promoter-TSS (ENSMUSG00000045948.8) protein_coding-promoter-TSS (ENSMUSG00000045948.8) 1731 ENSMUSG00000045948.8 ENSMUSG00000045948 ENSMUST00000165004 Mrps12 protein_coding Interval_107604 chr3 108829728 108832380 + 0 NA intron (ENSMUSG00000027882.18, intron 1 of 4) protein_coding-intron (ENSMUSG00000027882.18, intron 1 of 18) 9461 ENSMUSG00000027882.18 ENSMUSG00000027882 ENSMUST00000106596 Stxbp3 protein_coding Interval_123048 chr5 29211630 29212632 + 0 NA intron (ENSMUSG00000029130.12, intron 5 of 5) protein_coding-intron (ENSMUSG00000029130.12, intron 8 of 9) -5593 ENSMUSG00000089975.2 ENSMUSG00000089975 ENSMUST00000162836 Gm7420 transcribed_processed_pseudogene Interval_136530 chr6 55184300 55184509 + 0 NA Intergenic Intergenic -9390 ENSMUSG00000003477.5 ENSMUSG00000003477 ENSMUST00000152720 Inmt protein_coding Interval_165128 chr9 44707893 44709834 + 0 NA promoter-TSS (ENSMUSG00000048537.16) protein_coding-promoter-TSS (ENSMUSG00000048537.16) -4147 ENSMUSG00000111280.1 ENSMUSG00000111280 ENSMUST00000214717 Gm47239 TEC Interval_113497 chr4 55360631 55361038 + 0 NA intron (ENSMUSG00000028426.10, intron 1 of 1) protein_coding-intron (ENSMUSG00000028426.10, intron 1 of 9) 10744 ENSMUSG00000028426.10 ENSMUSG00000028426 ENSMUST00000156263 Rad23b protein_coding Interval_14527 chr10 34898792 34898967 + 0 NA TTS (ENSMUSG00000110935.1) processed_pseudogene-TTS (ENSMUSG00000110935.1) 623 ENSMUSG00000110935.1 ENSMUSG00000110935 ENSMUST00000216459 Gm8834 processed_pseudogene Interval_54149 chr14 65741977 65742238 + 0 NA intron (ENSMUSG00000022032.14, intron 6 of 7) protein_coding-intron (ENSMUSG00000022032.14, intron 6 of 8) -63830 ENSMUSG00000022033.9 ENSMUSG00000022033 ENSMUST00000139644 Pbk protein_coding Interval_137550 chr6 73090240 73091389 + 0 NA intron (ENSMUSG00000052861.13, intron 46 of 75) protein_coding-intron (ENSMUSG00000052861.13, intron 47 of 76) 50866 ENSMUSG00000065072.1 ENSMUSG00000065072 ENSMUST00000083138 Gm24533 snoRNA Interval_167359 chr9 67784049 67784356 + 0 NA Intergenic Intergenic -23994 ENSMUSG00000055125.7 ENSMUSG00000055125 ENSMUST00000186205 M5C1000I18Rik lincRNA Interval_105639 chr3 88288045 88288911 + 0 NA intron (ENSMUSG00000010538.14, intron 2 of 3) protein_coding-intron (ENSMUSG00000010538.14, intron 2 of 3) -1268 ENSMUSG00000103766.5 ENSMUSG00000103766 ENSMUST00000163277 Gm38392 protein_coding Interval_97052 chr2 130803755 130804257 + 0 NA promoter-TSS (ENSMUSG00000089662.1) transcribed_processed_pseudogene-promoter-TSS (ENSMUSG00000089662.1) -24 ENSMUSG00000089662.1 ENSMUSG00000089662 ENSMUST00000120631 Gm14057 transcribed_processed_pseudogene Interval_46629 chr13 67749227 67749529 + 0 NA TTS (ENSMUSG00000058331.15) protein_coding-TTS (ENSMUSG00000058331.15) -2897 ENSMUSG00000044081.7 ENSMUSG00000044081 ENSMUST00000181158 Zfp85os processed_transcript Interval_3660 chr1 60478909 60479110 + 0 NA exon (ENSMUSG00000026782.15, exon 9 of 9) protein_coding-exon (ENSMUSG00000026782.15, exon 9 of 9) 24256 ENSMUSG00000026014.15 ENSMUSG00000026014 ENSMUST00000142258 Raph1 protein_coding Interval_50986 chr14 21508187 21508627 + 0 NA intron (ENSMUSG00000021767.19, intron 1 of 1) protein_coding-intron (ENSMUSG00000021767.19, intron 1 of 16) -8468 ENSMUSG00000021767.19 ENSMUSG00000021767 ENSMUST00000226589 Kat6b protein_coding Interval_140505 chr6 119001128 119001877 + 0 NA intron (ENSMUSG00000051331.16, intron 3 of 3) protein_coding-intron (ENSMUSG00000051331.16, intron 3 of 46) 166602 ENSMUSG00000089115.1 ENSMUSG00000089115 ENSMUST00000158490 Gm25905 snRNA Interval_33790 chr11 118520244 118520452 + 0 NA intron (ENSMUSG00000025576.17, intron 3 of 13) protein_coding-intron (ENSMUSG00000025576.17, intron 4 of 14) -12995 ENSMUSG00000025576.17 ENSMUSG00000025576 ENSMUST00000134774 Rbfox3 protein_coding Interval_168670 chr9 85701153 85701369 + 0 NA intron (ENSMUSG00000035941.15, intron 24 of 27) protein_coding-intron (ENSMUSG00000035941.15, intron 25 of 28) 17277 ENSMUSG00000035941.15 ENSMUSG00000035941 ENSMUST00000186447 Ibtk protein_coding Interval_3449 chr1 58439788 58440056 + 0 NA exon (ENSMUSG00000026035.15, exon 1 of 1) protein_coding-exon (ENSMUSG00000026035.15, exon 1 of 1) 5517 ENSMUSG00000026035.15 ENSMUSG00000026035 ENSMUST00000188896 Ppil3 protein_coding Interval_51299 chr14 25832070 25832968 + 0 NA Intergenic Intergenic -4414 ENSMUSG00000077081.1 ENSMUSG00000077081 ENSMUST00000103893 Gm23701 miRNA Interval_41840 chr13 3236296 3236499 + 0 NA Intergenic Intergenic -36880 ENSMUSG00000113271.1 ENSMUSG00000113271 ENSMUST00000222272 Gm40653 lincRNA Interval_2478 chr1 39654623 39655441 + 0 NA exon (ENSMUSG00000097083.1, exon 2 of 2) antisense-exon (ENSMUSG00000097083.1, exon 2 of 2) -3558 ENSMUSG00000050967.5 ENSMUSG00000050967 ENSMUST00000053355 Creg2 protein_coding Interval_113030 chr4 47050183 47050993 + 0 NA intron (ENSMUSG00000066191.12, intron 1 of 15) protein_coding-intron (ENSMUSG00000066191.12, intron 1 of 14) 6839 ENSMUSG00000066191.12 ENSMUSG00000066191 ENSMUST00000154664 Anks6 protein_coding Interval_70130 chr17 5640733 5641395 + 0 NA intron (ENSMUSG00000034265.8, intron 1 of 8) protein_coding-intron (ENSMUSG00000034265.8, intron 1 of 8) 148507 ENSMUSG00000034265.8 ENSMUSG00000034265 ENSMUST00000089185 Zdhhc14 protein_coding Interval_82197 chr18 68870935 68872330 + 0 NA Intergenic Intergenic -66274 ENSMUSG00000118102.1 ENSMUSG00000118102 ENSMUST00000237657 Gm50260 lincRNA Interval_94005 chr2 80632412 80632887 + 0 NA TTS (ENSMUSG00000027001.10) protein_coding-TTS (ENSMUSG00000027001.10) -3081 ENSMUSG00000086436.2 ENSMUSG00000086436 ENSMUST00000118989 Gm13690 processed_pseudogene Interval_173120 chrX 72577971 72579110 + 0 NA intron (ENSMUSG00000031343.13, intron 1 of 9) protein_coding-intron (ENSMUSG00000031343.13, intron 1 of 9) 11554 ENSMUSG00000076455.1 ENSMUSG00000076455 ENSMUST00000103256 Mir767 miRNA Interval_154807 chr8 23533989 23534546 + 0 NA Intergenic Intergenic 122765 ENSMUSG00000031548.7 ENSMUSG00000031548 ENSMUST00000033952 Sfrp1 protein_coding Interval_142707 chr6 145075619 145076654 + 0 NA promoter-TSS (ENSMUSG00000030268.17) protein_coding-promoter-TSS (ENSMUSG00000030268.17) 19747 ENSMUSG00000086643.1 ENSMUSG00000086643 ENSMUST00000141440 Gm15687 antisense Interval_159707 chr8 98585085 98585655 + 0 NA Intergenic Intergenic 89832 ENSMUSG00000080480.1 ENSMUSG00000080480 ENSMUST00000116830 Gm23494 snRNA Interval_170078 chr9 104269592 104270133 + 0 NA Intergenic Intergenic 7757 ENSMUSG00000104040.1 ENSMUSG00000104040 ENSMUST00000192580 Gm37563 TEC Interval_121090 chr4 152824771 152825112 + 0 NA Intergenic Intergenic 127401 ENSMUSG00000073699.3 ENSMUSG00000073699 ENSMUST00000143133 Gm833 lincRNA Interval_148416 chr7 81125465 81126418 + 0 NA intron (ENSMUSG00000025726.11, intron 6 of 17) protein_coding-intron (ENSMUSG00000025726.11, intron 6 of 17) 11091 ENSMUSG00000025726.11 ENSMUSG00000025726 ENSMUST00000119083 Slc28a1 protein_coding Interval_166244 chr9 57758406 57759806 + 0 NA exon (ENSMUSG00000032316.8, exon 3 of 11) protein_coding-exon (ENSMUSG00000032316.8, exon 3 of 11) 6083 ENSMUSG00000032316.8 ENSMUSG00000032316 ENSMUST00000215158 Clk3 protein_coding Interval_161111 chr8 117541137 117541934 + 0 NA intron (ENSMUSG00000034330.10, intron 2 of 32) protein_coding-intron (ENSMUSG00000034330.10, intron 2 of 32) 5491 ENSMUSG00000092818.2 ENSMUSG00000092818 ENSMUST00000175077 Gm27361 miRNA Interval_56111 chr14 105864767 105865780 + 0 NA Intergenic Intergenic -2772 ENSMUSG00000115796.1 ENSMUSG00000115796 ENSMUST00000226354 Gm48970 lincRNA Interval_121303 chr4 154863600 154864900 + 0 NA TTS (ENSMUSG00000087437.7) antisense-TTS (ENSMUSG00000087437.7) -5335 ENSMUSG00000058183.14 ENSMUSG00000058183 ENSMUST00000129623 Mmel1 protein_coding Interval_53919 chr14 63392180 63392430 + 0 NA intron (ENSMUSG00000014453.4, intron 1 of 12) protein_coding-intron (ENSMUSG00000014453.4, intron 1 of 12) -15887 ENSMUSG00000014453.4 ENSMUSG00000014453 ENSMUST00000224965 Blk protein_coding Interval_51708 chr14 31544483 31544937 + 0 NA intron (ENSMUSG00000057606.14, intron 7 of 16) protein_coding-intron (ENSMUSG00000057606.14, intron 7 of 16) -7452 ENSMUSG00000089241.1 ENSMUSG00000089241 ENSMUST00000158616 Gm24057 misc_RNA Interval_40980 chr12 110408490 110409161 + 0 NA Intergenic Intergenic -38482 ENSMUSG00000017843.14 ENSMUSG00000017843 ENSMUST00000221074 Ppp2r5c protein_coding Interval_83262 chr18 83074391 83074803 + 0 NA TTS (ENSMUSG00000100430.2) lincRNA-TTS (ENSMUSG00000100430.2) 33263 ENSMUSG00000100430.2 ENSMUSG00000100430 ENSMUST00000236396 1700095A13Rik lincRNA Interval_117747 chr4 125990220 125990820 + 0 NA Intergenic Intergenic -34206 ENSMUSG00000028859.14 ENSMUSG00000028859 ENSMUST00000140426 Csf3r protein_coding Interval_123234 chr5 30788790 30789114 + 0 NA intron (ENSMUSG00000029168.14, intron 1 of 4) protein_coding-intron (ENSMUSG00000029168.14, intron 9 of 12) 762 ENSMUSG00000029168.14 ENSMUSG00000029168 ENSMUST00000138625 Dpysl5 protein_coding Interval_63111 chr15 99134265 99134592 + 0 NA intron (ENSMUSG00000051934.5, intron 1 of 5) protein_coding-intron (ENSMUSG00000051934.5, intron 1 of 12) -1256 ENSMUSG00000088377.1 ENSMUSG00000088377 ENSMUST00000157752 Gm25183 snoRNA Interval_153164 chr7 142000338 142000943 + 0 NA promoter-TSS (ENSMUSG00000053046.16) protein_coding-promoter-TSS (ENSMUSG00000053046.16) -801 ENSMUSG00000053046.16 ENSMUSG00000053046 ENSMUST00000210065 Brsk2 protein_coding Interval_109781 chr3 146924557 146925577 + 0 NA intron (ENSMUSG00000036745.15, intron 10 of 20) protein_coding-intron (ENSMUSG00000036745.15, intron 10 of 21) -18853 ENSMUSG00000036745.15 ENSMUSG00000036745 ENSMUST00000197547 Ttll7 protein_coding Interval_131578 chr5 138255164 138256280 + 0 NA promoter-TSS (ENSMUSG00000050552.8) protein_coding-promoter-TSS (ENSMUSG00000050552.8) -109 ENSMUSG00000050552.8 ENSMUSG00000050552 ENSMUST00000160157 Lamtor4 protein_coding Interval_120780 chr4 150612375 150612883 + 0 NA TTS (ENSMUSG00000039852.17) protein_coding-TTS (ENSMUSG00000039852.17) -2786 ENSMUSG00000039852.17 ENSMUSG00000039852 ENSMUST00000136646 Rere protein_coding Interval_28228 chr11 74536125 74537270 + 0 NA intron (ENSMUSG00000038807.19, intron 3 of 25) protein_coding-intron (ENSMUSG00000038807.19, intron 3 of 25) 74218 ENSMUSG00000038807.19 ENSMUSG00000038807 ENSMUST00000145524 Rap1gap2 protein_coding Interval_20017 chr10 112001464 112001916 + 0 NA intron (ENSMUSG00000056888.11, intron 1 of 6) protein_coding-intron (ENSMUSG00000056888.11, intron 1 of 1) -5875 ENSMUSG00000056888.11 ENSMUSG00000056888 ENSMUST00000174201 Glipr1 protein_coding Interval_116065 chr4 107362169 107363748 + 0 NA Intergenic Intergenic -11605 ENSMUSG00000086041.1 ENSMUSG00000086041 ENSMUST00000156265 Gm12869 antisense Interval_4875 chr1 80983485 80984525 + 0 NA Intergenic Intergenic 34579 ENSMUSG00000099918.1 ENSMUSG00000099918 ENSMUST00000188657 Gm28066 processed_pseudogene Interval_77573 chr17 92088793 92089160 + 0 NA Intergenic Intergenic -92089 ENSMUSG00000117584.1 ENSMUSG00000117584 ENSMUST00000234894 Gm49994 processed_pseudogene Interval_113832 chr4 59206125 59206677 + 0 NA intron (ENSMUSG00000028381.8, intron 1 of 2) protein_coding-intron (ENSMUSG00000028381.8, intron 1 of 8) -6255 ENSMUSG00000028381.8 ENSMUSG00000028381 ENSMUST00000155153 Ugcg protein_coding Interval_73504 chr17 38225158 38225673 + 0 NA Intergenic Intergenic 21080 ENSMUSG00000057801.3 ENSMUSG00000057801 ENSMUST00000076245 Olfr135 protein_coding Interval_153056 chr7 141092063 141092834 + 0 NA TTS (ENSMUSG00000025494.8) protein_coding-TTS (ENSMUSG00000025494.8) 8124 ENSMUSG00000025494.8 ENSMUSG00000025494 ENSMUST00000209352 Sigirr protein_coding Interval_53628 chr14 60299721 60300744 + 0 NA intron (ENSMUSG00000021987.9, intron 14 of 14) protein_coding-intron (ENSMUSG00000021987.9, intron 13 of 13) 34959 ENSMUSG00000021987.9 ENSMUSG00000021987 ENSMUST00000224164 Mtmr6 protein_coding Interval_68668 chr16 84247159 84247391 + 0 NA exon (ENSMUSG00000116748.1, exon 1 of 1) processed_pseudogene-exon (ENSMUSG00000116748.1, exon 1 of 1) 964 ENSMUSG00000116748.1 ENSMUSG00000116748 ENSMUST00000231876 Gm7295 processed_pseudogene Interval_26121 chr11 54529326 54529724 + 0 NA intron (ENSMUSG00000037533.20, intron 1 of 28) protein_coding-intron (ENSMUSG00000037533.20, intron 1 of 28) 64965 ENSMUSG00000035992.15 ENSMUSG00000035992 ENSMUST00000143650 Fnip1 protein_coding Interval_80742 chr18 46741151 46742496 + 0 NA promoter-TSS (ENSMUSG00000024480.9) protein_coding-promoter-TSS (ENSMUSG00000024480.9) -266 ENSMUSG00000032905.5 ENSMUSG00000032905 ENSMUST00000234830 Atg12 protein_coding Interval_168064 chr9 75786934 75787179 + 0 NA intron (ENSMUSG00000032179.7, intron 1 of 6) protein_coding-intron (ENSMUSG00000032179.7, intron 1 of 6) -40966 ENSMUSG00000032179.7 ENSMUSG00000032179 ENSMUST00000137213 Bmp5 protein_coding Interval_52083 chr14 35432029 35433041 + 0 NA intron (ENSMUSG00000041078.7, intron 8 of 15) protein_coding-intron (ENSMUSG00000041078.7, intron 8 of 15) -17813 ENSMUSG00000041078.7 ENSMUSG00000041078 ENSMUST00000173307 Grid1 protein_coding Interval_31192 chr11 98794490 98797102 + 0 NA promoter-TSS (ENSMUSG00000052915.14) protein_coding-promoter-TSS (ENSMUSG00000052915.14) -8475 ENSMUSG00000052915.14 ENSMUSG00000052915 ENSMUST00000141016 Msl1 protein_coding Interval_112937 chr4 46201847 46203033 + 0 NA Intergenic Intergenic -6136 ENSMUSG00000028329.13 ENSMUSG00000028329 ENSMUST00000130051 Xpa protein_coding Interval_130008 chr5 123694043 123695539 + 0 NA Intergenic Intergenic 10016 ENSMUSG00000104694.1 ENSMUSG00000104694 ENSMUST00000198221 Gm43797 TEC Interval_154589 chr8 21640639 21641111 + 0 NA TTS (ENSMUSG00000084366.1) unprocessed_pseudogene-TTS (ENSMUSG00000084366.1) 1804 ENSMUSG00000084366.1 ENSMUSG00000084366 ENSMUST00000119179 Gm15313 unprocessed_pseudogene Interval_70649 chr17 12797910 12798199 + 0 NA intron (ENSMUSG00000117061.1, intron 2 of 3) antisense-intron (ENSMUSG00000078247.5, intron 1 of 1) 2741 ENSMUSG00000117061.1 ENSMUSG00000117061 ENSMUST00000233721 Gm49958 lincRNA Interval_57736 chr15 17701180 17701736 + 0 NA Intergenic Intergenic -109777 ENSMUSG00000080596.1 ENSMUSG00000080596 ENSMUST00000116946 Gm22032 miRNA Interval_155786 chr8 37787581 37789074 + 0 NA exon (ENSMUSG00000081316.1, exon 1 of 1) processed_pseudogene-exon (ENSMUSG00000081316.1, exon 1 of 1) 365 ENSMUSG00000081316.1 ENSMUSG00000081316 ENSMUST00000117720 Gm16205 processed_pseudogene Interval_68291 chr16 72662837 72664563 + 0 NA exon (ENSMUSG00000022883.11, exon 1 of 29) protein_coding-exon (ENSMUSG00000022883.11, exon 1 of 29) -291259 ENSMUSG00000116910.1 ENSMUSG00000116910 ENSMUST00000232381 Gm49670 processed_pseudogene Interval_173946 chrX 114838267 114838610 + 0 NA Intergenic Intergenic -19449 ENSMUSG00000081160.1 ENSMUSG00000081160 ENSMUST00000118213 Gm14897 processed_pseudogene Interval_127453 chr5 104052619 104053372 + 0 NA intron (ENSMUSG00000029310.13, intron 2 of 5) protein_coding-intron (ENSMUSG00000029310.13, intron 2 of 7) 4992 ENSMUSG00000093690.1 ENSMUSG00000093690 ENSMUST00000176065 Mir5619 miRNA Interval_125061 chr5 64185055 64185823 + 0 NA intron (ENSMUSG00000029174.18, intron 3 of 20) protein_coding-intron (ENSMUSG00000029174.18, intron 2 of 21) 5548 ENSMUSG00000083435.2 ENSMUSG00000083435 ENSMUST00000119516 Gm15824 processed_pseudogene Interval_72005 chr17 27541155 27542127 + 0 NA Intergenic Intergenic -11331 ENSMUSG00000116548.1 ENSMUSG00000116548 ENSMUST00000231925 Gm49773 TEC Interval_172724 chrX 47949558 47950483 + 0 NA intron (ENSMUSG00000001173.15, intron 16 of 16) protein_coding-intron (ENSMUSG00000001173.15, intron 18 of 23) 11629 ENSMUSG00000001173.15 ENSMUSG00000001173 ENSMUST00000115013 Ocrl protein_coding Interval_136618 chr6 56723874 56724107 + 0 NA intron (ENSMUSG00000029787.10, intron 2 of 4) protein_coding-intron (ENSMUSG00000029787.10, intron 2 of 15) 9091 ENSMUSG00000029787.10 ENSMUSG00000029787 ENSMUST00000176560 Avl9 protein_coding Interval_29423 chr11 83908012 83908219 + 0 NA Intergenic Intergenic -38140 ENSMUSG00000020677.7 ENSMUSG00000020677 ENSMUST00000130982 Ddx52 protein_coding Interval_150621 chr7 112868024 112869326 + 0 NA intron (ENSMUSG00000055320.18, intron 8 of 10) protein_coding-intron (ENSMUSG00000055320.18, intron 10 of 13) -85287 ENSMUSG00000098132.1 ENSMUSG00000098132 ENSMUST00000182858 Rassf10 protein_coding Interval_29659 chr11 85863982 85864919 + 0 NA Intergenic Intergenic -14117 ENSMUSG00000069785.4 ENSMUSG00000069785 ENSMUST00000146433 Gm11444 protein_coding Interval_171069 chr9 114367711 114369603 + 0 NA exon (ENSMUSG00000074039.10, exon 1 of 2) processed_transcript-exon (ENSMUSG00000074039.10, exon 1 of 2) 333 ENSMUSG00000074039.10 ENSMUSG00000074039 ENSMUST00000131898 4930520O04Rik processed_transcript Interval_139461 chr6 100333840 100334228 + 0 NA Intergenic Intergenic -47286 ENSMUSG00000072872.3 ENSMUSG00000072872 ENSMUST00000205164 Rybp protein_coding Interval_124629 chr5 52570779 52571564 + 0 NA Intergenic Intergenic -4868 ENSMUSG00000039252.11 ENSMUSG00000039252 ENSMUST00000039750 Lgi2 protein_coding Interval_21969 chr11 5477504 5479142 + 0 NA Intergenic Intergenic 17123 ENSMUSG00000085232.3 ENSMUSG00000085232 ENSMUST00000145746 Gm11962 processed_pseudogene Interval_82098 chr18 67710245 67711499 + 0 NA intron (ENSMUSG00000024539.17, intron 2 of 8) protein_coding-intron (ENSMUSG00000024539.17, intron 2 of 9) -20648 ENSMUSG00000024539.17 ENSMUSG00000024539 ENSMUST00000128169 Ptpn2 protein_coding Interval_101909 chr3 11013956 11014585 + 0 NA Intergenic Intergenic -4667 ENSMUSG00000103323.1 ENSMUSG00000103323 ENSMUST00000195041 Gm21631 processed_pseudogene Interval_164124 chr9 31689798 31690113 + 0 NA Intergenic Intergenic -11929 ENSMUSG00000110853.1 ENSMUSG00000110853 ENSMUST00000217207 Gm47436 lincRNA Interval_161911 chr8 123708373 123709127 + 0 NA intron (ENSMUSG00000092329.1, intron 1 of 15) protein_coding-intron (ENSMUSG00000092329.1, intron 1 of 15) -25208 ENSMUSG00000110599.1 ENSMUSG00000110599 ENSMUST00000212339 6030466F02Rik lincRNA Interval_93694 chr2 75945493 75945752 + 0 NA Intergenic Intergenic -7037 ENSMUSG00000075273.4 ENSMUSG00000075273 ENSMUST00000099996 Ttc30b protein_coding Interval_77437 chr17 88712727 88713019 + 0 NA intron (ENSMUSG00000024154.11, intron 8 of 8) protein_coding-intron (ENSMUSG00000024154.11, intron 8 of 8) 44196 ENSMUSG00000024154.11 ENSMUSG00000024154 ENSMUST00000161481 Gtf2a1l protein_coding Interval_131787 chr5 139869847 139871137 + 0 NA Intergenic Intergenic -25317 ENSMUSG00000105335.1 ENSMUSG00000105335 ENSMUST00000196396 Gm42423 lincRNA Interval_140421 chr6 117966890 117967747 + 0 NA Intergenic Intergenic -29889 ENSMUSG00000082791.3 ENSMUSG00000082791 ENSMUST00000118257 Gm4875 processed_pseudogene Interval_46491 chr13 66563277 66564247 + 0 NA Intergenic Intergenic 2276 ENSMUSG00000114645.1 ENSMUSG00000114645 ENSMUST00000224238 Gm49531 processed_pseudogene Interval_149350 chr7 97635625 97635829 + 0 NA intron (ENSMUSG00000086433.1, intron 1 of 2) protein_coding-intron (ENSMUSG00000035623.14, intron 2 of 15) 9385 ENSMUSG00000086433.1 ENSMUSG00000086433 ENSMUST00000126902 Rsf1os1 antisense Interval_70828 chr17 15143037 15143774 + 0 NA Intergenic Intergenic -8754 ENSMUSG00000116655.1 ENSMUSG00000116655 ENSMUST00000231330 Gm35455 lincRNA Interval_153440 chr7 144806705 144807514 + 0 NA Intergenic Intergenic 15113 ENSMUSG00000108874.1 ENSMUSG00000108874 ENSMUST00000208857 Gm9711 processed_pseudogene Interval_8901 chr1 151947746 151947955 + 0 NA intron (ENSMUSG00000032666.16, intron 3 of 6) protein_coding-intron (ENSMUSG00000032666.16, intron 3 of 5) 72431 ENSMUSG00000100685.1 ENSMUSG00000100685 ENSMUST00000187716 Gm28610 antisense Interval_123198 chr5 30550486 30550822 + 0 NA Intergenic Intergenic -4818 ENSMUSG00000053194.2 ENSMUSG00000053194 ENSMUST00000065486 Cib4 protein_coding Interval_102167 chr3 19109151 19110182 + 0 NA Intergenic Intergenic 34233 ENSMUSG00000103135.1 ENSMUSG00000103135 ENSMUST00000193065 Gm37979 TEC Interval_146645 chr7 49068531 49069711 + 0 NA intron (ENSMUSG00000052512.17, intron 2 of 39) protein_coding-intron (ENSMUSG00000052512.17, intron 2 of 39) -6540 ENSMUSG00000109068.1 ENSMUSG00000109068 ENSMUST00000207469 Gm45207 processed_pseudogene Interval_143682 chr7 14403604 14403819 + 0 NA Intergenic Intergenic 32736 ENSMUSG00000030378.15 ENSMUSG00000030378 ENSMUST00000209972 Sult2a8 protein_coding Interval_98970 chr2 156406904 156408655 + 0 NA Intergenic Intergenic 3245 ENSMUSG00000076230.1 ENSMUSG00000076230 ENSMUST00000102275 Gm22758 miRNA Interval_68352 chr16 73896825 73897472 + 0 NA exon (ENSMUSG00000052516.19, exon 25 of 26) protein_coding-exon (ENSMUSG00000052516.19, exon 25 of 26) 64712 ENSMUSG00000052516.19 ENSMUSG00000052516 ENSMUST00000156010 Robo2 protein_coding Interval_80173 chr18 38021857 38022335 + 0 NA Intergenic Intergenic -1433 ENSMUSG00000118056.1 ENSMUSG00000118056 ENSMUST00000236681 Gm30093 lincRNA Interval_14399 chr10 32946498 32946936 + 0 NA Intergenic Intergenic -7032 ENSMUSG00000112469.1 ENSMUSG00000112469 ENSMUST00000218959 Gm47823 lincRNA Interval_26149 chr11 54761678 54761890 + 0 NA intron (ENSMUSG00000052298.12, intron 1 of 4) protein_coding-intron (ENSMUSG00000052298.12, intron 1 of 5) -14960 ENSMUSG00000082503.1 ENSMUSG00000082503 ENSMUST00000120487 Gm12229 processed_pseudogene Interval_165765 chr9 52286030 52286261 + 0 NA Intergenic Intergenic -5054 ENSMUSG00000077796.1 ENSMUSG00000077796 ENSMUST00000104608 Gm25562 snoRNA Interval_105016 chr3 79811810 79812099 + 0 NA TTS (ENSMUSG00000027956.11) protein_coding-TTS (ENSMUSG00000027956.11) -22979 ENSMUSG00000077461.1 ENSMUSG00000077461 ENSMUST00000104273 Gm26420 snRNA Interval_38256 chr12 76676840 76677026 + 0 NA intron (ENSMUSG00000021061.15, intron 1 of 31) protein_coding-intron (ENSMUSG00000021061.15, intron 1 of 35) -15047 ENSMUSG00000088356.1 ENSMUSG00000088356 ENSMUST00000157731 Gm24010 misc_RNA Interval_111160 chr4 13431368 13433739 + 0 NA Intergenic Intergenic -12217 ENSMUSG00000081327.1 ENSMUSG00000081327 ENSMUST00000122192 Gm11819 processed_pseudogene Interval_103452 chr3 41639436 41639646 + 0 NA intron (ENSMUSG00000059834.12, intron 18 of 20) protein_coding-intron (ENSMUSG00000059834.12, intron 18 of 20) 9709 ENSMUSG00000102436.1 ENSMUSG00000102436 ENSMUST00000193690 Gm38047 TEC Interval_41718 chr12 118264178 118264394 + 0 NA intron (ENSMUSG00000025323.10, intron 1 of 1) protein_coding-intron (ENSMUSG00000025323.10, intron 3 of 5) -29722 ENSMUSG00000113831.1 ENSMUSG00000113831 ENSMUST00000220671 Gm49602 lincRNA Interval_154553 chr8 19402626 19402976 + 0 NA Intergenic Intergenic -19705 ENSMUSG00000082710.1 ENSMUSG00000082710 ENSMUST00000121373 Defa-ps14 unprocessed_pseudogene Interval_145179 chr7 30484108 30484837 + 0 NA promoter-TSS (ENSMUSG00000006649.17) protein_coding-promoter-TSS (ENSMUSG00000006649.17) 625 ENSMUSG00000109509.1 ENSMUSG00000109509 ENSMUST00000208689 Rps12-ps4 processed_pseudogene Interval_72779 chr17 32121899 32122873 + 0 NA TTS (ENSMUSG00000038146.8) protein_coding-TTS (ENSMUSG00000038146.8) 8975 ENSMUSG00000097305.2 ENSMUSG00000097305 ENSMUST00000236612 Gm17276 antisense Interval_24995 chr11 42748897 42749131 + 0 NA Intergenic Intergenic -148481 ENSMUSG00000084627.1 ENSMUSG00000084627 ENSMUST00000122678 Gm25543 misc_RNA Interval_156672 chr8 56677704 56677946 + 0 NA Intergenic Intergenic -35224 ENSMUSG00000109760.1 ENSMUSG00000109760 ENSMUST00000210829 Gm6503 processed_pseudogene Interval_136232 chr6 52197094 52197904 + 0 NA intron (ENSMUSG00000101298.1, intron 2 of 3) protein_coding-intron (ENSMUSG00000079560.13, intron 2 of 4) -5746 ENSMUSG00000000942.10 ENSMUSG00000000942 ENSMUST00000101395 Hoxa4 protein_coding Interval_60514 chr15 74576203 74577739 + 0 NA intron (ENSMUSG00000034730.17, intron 6 of 12) protein_coding-intron (ENSMUSG00000034730.17, intron 24 of 30) -10953 ENSMUSG00000034730.17 ENSMUSG00000034730 ENSMUST00000230935 Adgrb1 protein_coding Interval_98285 chr2 150809716 150810032 + 0 NA intron (ENSMUSG00000033059.7, intron 4 of 6) protein_coding-intron (ENSMUSG00000033059.7, intron 4 of 19) -5448 ENSMUSG00000033059.7 ENSMUSG00000033059 ENSMUST00000135717 Pygb protein_coding Interval_69868 chr16 97734384 97735075 + 0 NA Intergenic Intergenic 29058 ENSMUSG00000005251.15 ENSMUSG00000005251 ENSMUST00000019386 Ripk4 protein_coding Interval_91437 chr2 38874530 38875010 + 0 NA intron (ENSMUSG00000063972.13, intron 3 of 11) protein_coding-intron (ENSMUSG00000063972.13, intron 2 of 10) 12607 ENSMUSG00000107468.1 ENSMUSG00000107468 ENSMUST00000204297 5730507A11Rik TEC Interval_30100 chr11 89174106 89175972 + 0 NA Intergenic Intergenic -38273 ENSMUSG00000089485.1 ENSMUSG00000089485 ENSMUST00000158860 Gm24734 misc_RNA Interval_129450 chr5 120251930 120252973 + 0 NA Intergenic Intergenic -2807 ENSMUSG00000106915.1 ENSMUSG00000106915 ENSMUST00000202782 Gm42655 TEC Interval_31702 chr11 102337718 102338766 + 0 NA Intergenic Intergenic -19146 ENSMUSG00000020923.17 ENSMUSG00000020923 ENSMUST00000128016 Ubtf protein_coding Interval_110149 chr3 153756702 153757175 + 0 NA Intergenic Intergenic 7639 ENSMUSG00000106011.1 ENSMUSG00000106011 ENSMUST00000198828 Gm43833 processed_pseudogene Interval_49697 chr13 114052893 114053359 + 0 NA intron (ENSMUSG00000042348.10, intron 5 of 5) protein_coding-intron (ENSMUSG00000042348.10, intron 4 of 4) 67290 ENSMUSG00000114696.1 ENSMUSG00000114696 ENSMUST00000223997 Gm47479 TEC Interval_150735 chr7 114004080 114004819 + 0 NA intron (ENSMUSG00000038156.16, intron 6 of 15) protein_coding-intron (ENSMUSG00000038156.16, intron 6 of 15) -82449 ENSMUSG00000110248.1 ENSMUSG00000110248 ENSMUST00000210417 Gm45615 antisense Interval_91884 chr2 51006531 51008392 + 0 NA Intergenic Intergenic 97777 ENSMUSG00000083270.1 ENSMUSG00000083270 ENSMUST00000119159 Gm13498 processed_pseudogene Interval_15350 chr10 44997425 44998041 + 0 NA Intergenic Intergenic -8377 ENSMUSG00000095168.1 ENSMUSG00000095168 ENSMUST00000095717 Gm4795 processed_pseudogene Interval_29838 chr11 87172055 87172710 + 0 NA intron (ENSMUSG00000018548.15, intron 12 of 23) protein_coding-intron (ENSMUSG00000018548.15, intron 12 of 23) -17692 ENSMUSG00000018548.15 ENSMUSG00000018548 ENSMUST00000154138 Trim37 protein_coding Interval_57032 chr15 4790622 4790880 + 0 NA intron (ENSMUSG00000022181.16, intron 3 of 3) protein_coding-intron (ENSMUSG00000022181.16, intron 10 of 15) 24806 ENSMUSG00000022181.16 ENSMUSG00000022181 ENSMUST00000162729 C6 protein_coding Interval_38308 chr12 77025498 77025940 + 0 NA Intergenic Intergenic 16482 ENSMUSG00000112030.1 ENSMUSG00000112030 ENSMUST00000219319 Gm35189 lincRNA Interval_13737 chr10 21600872 21601564 + 0 NA intron (ENSMUSG00000050844.5, intron 2 of 2) protein_coding-intron (ENSMUSG00000050844.5, intron 2 of 2) -15102 ENSMUSG00000050844.5 ENSMUSG00000050844 ENSMUST00000186635 1700020N01Rik protein_coding Interval_118159 chr4 129286526 129288159 + 0 NA promoter-TSS (ENSMUSG00000001333.9) protein_coding-promoter-TSS (ENSMUSG00000001333.9) -289 ENSMUSG00000001333.9 ENSMUSG00000001333 ENSMUST00000146448 Sync protein_coding Interval_57791 chr15 20013645 20013885 + 0 NA Intergenic Intergenic 5100 ENSMUSG00000115830.1 ENSMUSG00000115830 ENSMUST00000226614 Gm49176 processed_pseudogene Interval_123204 chr5 30614062 30614736 + 0 NA intron (ENSMUSG00000049265.7, intron 1 of 1) protein_coding-intron (ENSMUSG00000049265.7, intron 1 of 1) -6974 ENSMUSG00000049265.7 ENSMUSG00000049265 ENSMUST00000197428 Kcnk3 protein_coding Interval_86296 chr19 38466059 38466244 + 0 NA Intergenic Intergenic 7051 ENSMUSG00000088940.1 ENSMUSG00000088940 ENSMUST00000158315 Gm24930 misc_RNA Interval_37322 chr12 65114010 65115678 + 0 NA intron (ENSMUSG00000055884.8, intron 3 of 3) protein_coding-intron (ENSMUSG00000055884.8, intron 16 of 22) -14838 ENSMUSG00000112992.1 ENSMUSG00000112992 ENSMUST00000223249 Gm47869 processed_pseudogene Interval_100134 chr2 167250473 167251259 + 0 NA Intergenic Intergenic 30911 ENSMUSG00000083661.1 ENSMUSG00000083661 ENSMUST00000118980 Gm11473 processed_pseudogene Interval_143445 chr7 6856306 6856582 + 0 NA intron (ENSMUSG00000051527.11, intron 2 of 7) protein_coding-intron (ENSMUSG00000051527.11, intron 2 of 7) -16323 ENSMUSG00000092875.2 ENSMUSG00000092875 ENSMUST00000175134 Gm22649 misc_RNA Interval_157501 chr8 70921101 70921763 + 0 NA Intergenic Intergenic -4093 ENSMUSG00000088248.1 ENSMUSG00000088248 ENSMUST00000157623 Mir1969 miRNA Interval_147681 chr7 71837256 71838420 + 0 NA Intergenic Intergenic -71855 ENSMUSG00000108669.1 ENSMUSG00000108669 ENSMUST00000205699 4930441H08Rik lincRNA Interval_55823 chr14 100750233 100750433 + 0 NA Intergenic Intergenic 9935 ENSMUSG00000088160.1 ENSMUSG00000088160 ENSMUST00000157535 Gm23538 snRNA Interval_16923 chr10 69924117 69926847 + 0 NA promoter-TSS (ENSMUSG00000069601.14) protein_coding-promoter-TSS (ENSMUSG00000069601.14) -249529 ENSMUSG00000048701.13 ENSMUSG00000048701 ENSMUST00000135607 Ccdc6 protein_coding Interval_116278 chr4 109238727 109238914 + 0 NA exon (ENSMUSG00000028558.14, exon 2 of 8) protein_coding-exon (ENSMUSG00000028558.14, exon 2 of 8) -5762 ENSMUSG00000028558.14 ENSMUSG00000028558 ENSMUST00000141555 Calr4 protein_coding Interval_17740 chr10 79831202 79831434 + 0 NA TTS (ENSMUSG00000035852.11) protein_coding-TTS (ENSMUSG00000035852.11) 6631 ENSMUSG00000035852.11 ENSMUSG00000035852 ENSMUST00000218531 Misp protein_coding Interval_124733 chr5 53604775 53605509 + 0 NA intron (ENSMUSG00000039191.12, intron 3 of 12) protein_coding-intron (ENSMUSG00000039191.12, intron 1 of 10) -33490 ENSMUSG00000039191.12 ENSMUSG00000039191 ENSMUST00000202092 Rbpj protein_coding Interval_69319 chr16 92172707 92173026 + 0 NA intron (ENSMUSG00000116747.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000116747.1, intron 1 of 2) 16637 ENSMUSG00000116784.1 ENSMUSG00000116784 ENSMUST00000232093 Gm49716 processed_pseudogene Interval_84719 chr19 15934361 15935037 + 0 NA intron (ENSMUSG00000024640.9, intron 1 of 5) protein_coding-intron (ENSMUSG00000024640.9, intron 1 of 5) -8911 ENSMUSG00000090147.1 ENSMUSG00000090147 ENSMUST00000159873 Gm3329 processed_pseudogene Interval_65441 chr16 22365359 22366205 + 0 NA Intergenic Intergenic 36047 ENSMUSG00000013089.15 ENSMUSG00000013089 ENSMUST00000170393 Etv5 protein_coding Interval_83779 chr19 4659381 4659592 + 0 NA exon (ENSMUSG00000071691.11, exon 7 of 10) protein_coding-exon (ENSMUSG00000071691.11, exon 7 of 10) -20629 ENSMUSG00000117746.1 ENSMUSG00000117746 ENSMUST00000236726 Gm50372 processed_pseudogene Interval_1369 chr1 21026238 21026891 + 0 NA intron (ENSMUSG00000041779.5, intron 2 of 7) protein_coding-intron (ENSMUSG00000041779.5, intron 2 of 10) 17092 ENSMUSG00000041779.5 ENSMUSG00000041779 ENSMUST00000187210 Tram2 protein_coding Interval_65317 chr16 21473199 21474447 + 0 NA intron (ENSMUSG00000033653.18, intron 1 of 31) protein_coding-intron (ENSMUSG00000033653.18, intron 15 of 43) -59289 ENSMUSG00000033653.18 ENSMUSG00000033653 ENSMUST00000127903 Vps8 protein_coding Interval_139726 chr6 108156915 108157317 + 0 NA intron (ENSMUSG00000030101.15, intron 2 of 7) protein_coding-intron (ENSMUSG00000030101.15, intron 3 of 8) -16607 ENSMUSG00000091845.1 ENSMUSG00000091845 ENSMUST00000025040 Rpl36-ps12 processed_pseudogene Interval_22938 chr11 17658134 17659014 + 0 NA Intergenic Intergenic -19391 ENSMUSG00000082411.1 ENSMUSG00000082411 ENSMUST00000119079 Gm12016 processed_pseudogene Interval_2043 chr1 36077216 36077477 + 0 NA intron (ENSMUSG00000045216.7, intron 1 of 1) protein_coding-intron (ENSMUSG00000045216.7, intron 1 of 1) -24344 ENSMUSG00000045216.7 ENSMUSG00000045216 ENSMUST00000194670 Hs6st1 protein_coding Interval_92507 chr2 60200615 60200901 + 0 NA intron (ENSMUSG00000026987.16, intron 1 of 3) protein_coding-intron (ENSMUSG00000026987.16, intron 1 of 3) -9155 ENSMUSG00000026977.17 ENSMUSG00000026977 ENSMUST00000136367 Marchf7 protein_coding Interval_92348 chr2 59183392 59183721 + 0 NA intron (ENSMUSG00000026991.20, intron 1 of 4) protein_coding-intron (ENSMUSG00000026991.20, intron 1 of 21) 21629 ENSMUSG00000026991.20 ENSMUSG00000026991 ENSMUST00000124127 Pkp4 protein_coding Interval_55223 chr14 79467809 79468230 + 0 NA promoter-TSS (ENSMUSG00000022023.6) protein_coding-promoter-TSS (ENSMUSG00000022023.6) 4218 ENSMUSG00000022023.6 ENSMUSG00000022023 ENSMUST00000228105 Wbp4 protein_coding Interval_55568 chr14 92826510 92827330 + 0 NA Intergenic Intergenic 39646 ENSMUSG00000115720.1 ENSMUSG00000115720 ENSMUST00000226822 4930433E05Rik lincRNA Interval_145904 chr7 41581578 41583080 + 0 NA Intergenic Intergenic -8584 ENSMUSG00000090341.1 ENSMUSG00000090341 ENSMUST00000166613 Gm17217 transcribed_unprocessed_pseudogene Interval_50353 chr14 12005376 12005601 + 0 NA intron (ENSMUSG00000021745.14, intron 4 of 29) protein_coding-intron (ENSMUSG00000021745.14, intron 4 of 29) -24280 ENSMUSG00000085883.2 ENSMUSG00000085883 ENSMUST00000151564 Gm3848 antisense Interval_75131 chr17 63803384 63804002 + 0 NA Intergenic Intergenic -59369 ENSMUSG00000000127.15 ENSMUSG00000000127 ENSMUST00000038080 Fer protein_coding Interval_59619 chr15 56425651 56426379 + 0 NA Intergenic Intergenic 11002 ENSMUSG00000115064.1 ENSMUSG00000115064 ENSMUST00000228801 Gm49213 processed_pseudogene Interval_149549 chr7 99500055 99500906 + 0 NA Intergenic Intergenic 2762 ENSMUSG00000065311.1 ENSMUSG00000065311 ENSMUST00000083377 n-R5s156 rRNA Interval_121168 chr4 153737873 153738834 + 0 NA Intergenic Intergenic -138031 ENSMUSG00000077519.1 ENSMUSG00000077519 ENSMUST00000104331 Gm25880 snoRNA Interval_4058 chr1 66969134 66969493 + 0 NA Intergenic Intergenic 17484 ENSMUSG00000082212.1 ENSMUSG00000082212 ENSMUST00000121328 Gm15826 processed_pseudogene Interval_62118 chr15 87229802 87230240 + 0 NA Intergenic Intergenic -13529 ENSMUSG00000115930.1 ENSMUSG00000115930 ENSMUST00000229090 A930027H12Rik lincRNA Interval_164917 chr9 43083504 43083928 + 0 NA intron (ENSMUSG00000059495.14, intron 1 of 4) protein_coding-intron (ENSMUSG00000059495.14, intron 1 of 41) 32820 ENSMUSG00000048503.7 ENSMUSG00000048503 ENSMUST00000216126 Tlcd5 protein_coding Interval_9173 chr1 154722983 154723901 + 0 NA intron (ENSMUSG00000004110.17, intron 3 of 11) protein_coding-intron (ENSMUSG00000004110.17, intron 1 of 46) 93499 ENSMUSG00000004110.17 ENSMUSG00000004110 ENSMUST00000186256 Cacna1e protein_coding Interval_100857 chr2 172926395 172926608 + 0 NA intron (ENSMUSG00000008999.7, intron 1 of 1) protein_coding-intron (ENSMUSG00000008999.7, intron 1 of 6) 13591 ENSMUSG00000008999.7 ENSMUSG00000008999 ENSMUST00000137247 Bmp7 protein_coding Interval_50224 chr14 10555569 10555982 + 0 NA intron (ENSMUSG00000060579.13, intron 3 of 4) protein_coding-intron (ENSMUSG00000060579.13, intron 4 of 9) 77101 ENSMUSG00000065328.1 ENSMUSG00000065328 ENSMUST00000083394 Gm22053 snoRNA Interval_10273 chr1 167802205 167803821 + 0 NA intron (ENSMUSG00000026686.14, intron 4 of 8) protein_coding-intron (ENSMUSG00000026686.14, intron 3 of 7) 113776 ENSMUSG00000026686.14 ENSMUSG00000026686 ENSMUST00000028003 Lmx1a protein_coding Interval_34284 chr11 121965847 121966291 + 0 NA Intergenic Intergenic 4616 ENSMUSG00000082831.1 ENSMUSG00000082831 ENSMUST00000122407 Gm12591 unprocessed_pseudogene Interval_90918 chr2 33467998 33469445 + 0 NA promoter-TSS (ENSMUSG00000026788.13) protein_coding-promoter-TSS (ENSMUSG00000026788.13) -3639 ENSMUSG00000026788.13 ENSMUSG00000026788 ENSMUST00000126442 Zbtb43 protein_coding Interval_9822 chr1 162687870 162688480 + 0 NA promoter-TSS (ENSMUSG00000040225.15) protein_coding-promoter-TSS (ENSMUSG00000040225.15) -13955 ENSMUSG00000098259.1 ENSMUSG00000098259 ENSMUST00000184547 Gm27616 miRNA Interval_162751 chr9 8490422 8490810 + 0 NA Intergenic Intergenic 14343 ENSMUSG00000110828.1 ENSMUSG00000110828 ENSMUST00000216605 Gm47517 processed_pseudogene Interval_81353 chr18 58922841 58923440 + 0 NA intron (ENSMUSG00000053441.5, intron 6 of 22) protein_coding-intron (ENSMUSG00000053441.5, intron 6 of 22) -44268 ENSMUSG00000053441.5 ENSMUSG00000053441 ENSMUST00000237536 Adamts19 protein_coding Interval_132685 chr5 147139454 147139882 + 0 NA Intergenic Intergenic -38615 ENSMUSG00000083988.1 ENSMUSG00000083988 ENSMUST00000120308 Rps10-ps4 processed_pseudogene Interval_124471 chr5 48551474 48551695 + 0 NA intron (ENSMUSG00000029088.16, intron 1 of 8) protein_coding-intron (ENSMUSG00000029088.16, intron 1 of 8) -13643 ENSMUSG00000105653.1 ENSMUSG00000105653 ENSMUST00000200461 Gm43831 TEC Interval_137827 chr6 82780813 82781049 + 0 NA Intergenic Intergenic -7568 ENSMUSG00000000628.10 ENSMUSG00000000628 ENSMUST00000169270 Hk2 protein_coding Interval_14652 chr10 38006854 38007047 + 0 NA Intergenic Intergenic 75270 ENSMUSG00000096080.1 ENSMUSG00000096080 ENSMUST00000175235 Gm24710 miRNA Interval_98761 chr2 154776403 154776911 + 0 NA Intergenic Intergenic -6627 ENSMUSG00000098640.1 ENSMUSG00000098640 ENSMUST00000185009 Gm14214 protein_coding Interval_166539 chr9 60744580 60745032 + 0 NA intron (ENSMUSG00000095956.2, intron 1 of 3) lincRNA-intron (ENSMUSG00000095956.2, intron 1 of 3) 1686 ENSMUSG00000095956.2 ENSMUSG00000095956 ENSMUST00000178191 1700036A12Rik lincRNA Interval_169023 chr9 90270084 90272812 + 0 NA promoter-TSS (ENSMUSG00000037410.13) protein_coding-promoter-TSS (ENSMUSG00000037410.13) -15521 ENSMUSG00000037410.13 ENSMUSG00000037410 ENSMUST00000144646 Tbc1d2b protein_coding Interval_8807 chr1 151310263 151311085 + 0 NA Intergenic Intergenic 34062 ENSMUSG00000100954.4 ENSMUSG00000100954 ENSMUST00000206952 Gm10138 antisense Interval_84322 chr19 10100384 10102463 + 0 NA exon (ENSMUSG00000024665.8, exon 1 of 12) protein_coding-exon (ENSMUSG00000024665.8, exon 1 of 12) -30236 ENSMUSG00000024665.8 ENSMUSG00000024665 ENSMUST00000235937 Fads2 protein_coding Interval_156885 chr8 61460454 61460766 + 0 NA Intergenic Intergenic -27145 ENSMUSG00000031641.14 ENSMUSG00000031641 ENSMUST00000150932 Cbr4 protein_coding Interval_118161 chr4 129298186 129298520 + 0 NA intron (ENSMUSG00000001333.9, intron 2 of 2) protein_coding-intron (ENSMUSG00000001333.9, intron 2 of 4) 10722 ENSMUSG00000001333.9 ENSMUSG00000001333 ENSMUST00000146448 Sync protein_coding Interval_116183 chr4 108449063 108449404 + 0 NA Intergenic Intergenic 2109 ENSMUSG00000083255.1 ENSMUSG00000083255 ENSMUST00000122349 Gm12738 processed_pseudogene Interval_32788 chr11 110609556 110610205 + 0 NA Intergenic Intergenic 65373 ENSMUSG00000085985.1 ENSMUSG00000085985 ENSMUST00000144689 Gm11682 lincRNA Interval_127434 chr5 103901506 103902936 + 0 NA intron (ENSMUSG00000029312.12, intron 1 of 9) protein_coding-intron (ENSMUSG00000029312.12, intron 1 of 9) 3342 ENSMUSG00000095133.1 ENSMUSG00000095133 ENSMUST00000179033 Gm24897 snRNA Interval_132920 chr5 148746566 148747174 + 0 NA Intergenic Intergenic 5030 ENSMUSG00000086494.1 ENSMUSG00000086494 ENSMUST00000150265 2210417A02Rik lincRNA Interval_27203 chr11 64067047 64067247 + 0 NA intron (ENSMUSG00000042148.8, intron 3 of 6) protein_coding-intron (ENSMUSG00000042148.8, intron 3 of 6) 12321 ENSMUSG00000042148.8 ENSMUSG00000042148 ENSMUST00000125702 Cox10 protein_coding Interval_99206 chr2 158052599 158052786 + 0 NA intron (ENSMUSG00000027651.16, intron 5 of 5) protein_coding-intron (ENSMUSG00000027651.16, intron 5 of 6) 24000 ENSMUSG00000027651.16 ENSMUSG00000027651 ENSMUST00000135603 Rprd1b protein_coding Interval_12731 chr10 4548392 4548788 + 0 NA intron (ENSMUSG00000019767.12, intron 8 of 10) protein_coding-intron (ENSMUSG00000019767.12, intron 8 of 10) 15595 ENSMUSG00000019767.12 ENSMUSG00000019767 ENSMUST00000157064 Ccdc170 protein_coding Interval_68005 chr16 63048800 63049008 + 0 NA intron (ENSMUSG00000116574.1, intron 3 of 4) lincRNA-intron (ENSMUSG00000116574.1, intron 3 of 4) 45466 ENSMUSG00000116574.1 ENSMUSG00000116574 ENSMUST00000231727 Gm18870 lincRNA Interval_151843 chr7 127069673 127069860 + 0 NA intron (ENSMUSG00000108327.1, intron 1 of 1) protein_coding-intron (ENSMUSG00000049350.6, intron 1 of 4) 1310 ENSMUSG00000108327.1 ENSMUSG00000108327 ENSMUST00000206939 Gm44939 lincRNA Interval_119001 chr4 134944004 134945019 + 0 NA Intergenic Intergenic 13609 ENSMUSG00000028821.8 ENSMUSG00000028821 ENSMUST00000144037 Syf2 protein_coding Interval_42831 chr13 20120476 20121268 + 0 NA intron (ENSMUSG00000041112.17, intron 1 of 13) protein_coding-intron (ENSMUSG00000041112.17, intron 1 of 21) -125068 ENSMUSG00000050243.6 ENSMUSG00000050243 ENSMUST00000091762 Gm5446 processed_pseudogene Interval_98654 chr2 153869111 153869344 + 0 NA exon (ENSMUSG00000027480.12, exon 3 of 8) protein_coding-exon (ENSMUSG00000027480.12, exon 3 of 8) 1857 ENSMUSG00000027480.12 ENSMUSG00000027480 ENSMUST00000129011 Sun5 protein_coding Interval_64950 chr16 17474023 17474482 + 0 NA intron (ENSMUSG00000006134.4, intron 2 of 2) protein_coding-intron (ENSMUSG00000006134.4, intron 2 of 2) 8897 ENSMUSG00000088993.1 ENSMUSG00000088993 ENSMUST00000158368 Gm22770 snRNA Interval_135838 chr6 47819480 47821100 + 0 NA exon (ENSMUSG00000051499.7, exon 4 of 4) protein_coding-exon (ENSMUSG00000051499.7, exon 4 of 4) -4658 ENSMUSG00000094557.1 ENSMUSG00000094557 ENSMUST00000080603 Rpl35a-ps7 processed_pseudogene Interval_136878 chr6 62434709 62434939 + 0 NA Intergenic Intergenic -125562 ENSMUSG00000107908.1 ENSMUSG00000107908 ENSMUST00000203219 Gm43895 processed_pseudogene Interval_129853 chr5 122756575 122757245 + 0 NA TTS (ENSMUSG00000029471.13) protein_coding-TTS (ENSMUSG00000029471.13) 22423 ENSMUSG00000029471.13 ENSMUSG00000029471 ENSMUST00000199599 Camkk2 protein_coding Interval_103428 chr3 41491436 41493788 + 0 NA intron (ENSMUSG00000097639.2, intron 1 of 1) lincRNA-intron (ENSMUSG00000097639.2, intron 1 of 1) 578 ENSMUSG00000097639.2 ENSMUSG00000097639 ENSMUST00000181833 Platr4 lincRNA Interval_13513 chr10 18907427 18907835 + 0 NA Intergenic Intergenic -20602 ENSMUSG00000111318.1 ENSMUSG00000111318 ENSMUST00000214387 Gm48483 lincRNA Interval_15825 chr10 57592228 57592648 + 0 NA Intergenic Intergenic -8955 ENSMUSG00000093406.1 ENSMUSG00000093406 ENSMUST00000177147 Rpl48-ps1 processed_pseudogene Interval_91707 chr2 48466489 48466874 + 0 NA Intergenic Intergenic -9436 ENSMUSG00000086353.1 ENSMUSG00000086353 ENSMUST00000127672 Gm13481 lincRNA Interval_103699 chr3 51701065 51702209 + 0 NA intron (ENSMUSG00000061143.15, intron 2 of 4) protein_coding-intron (ENSMUSG00000061143.15, intron 1 of 3) 7921 ENSMUSG00000074603.3 ENSMUSG00000074603 ENSMUST00000099104 Gm10729 TEC Interval_164088 chr9 31404941 31405810 + 0 NA intron (ENSMUSG00000042185.14, intron 16 of 25) protein_coding-intron (ENSMUSG00000042185.14, intron 16 of 25) 9224 ENSMUSG00000042185.14 ENSMUSG00000042185 ENSMUST00000143558 Nfrkb protein_coding Interval_128052 chr5 110531052 110531756 + 0 NA Intergenic Intergenic 16460 ENSMUSG00000048215.14 ENSMUSG00000048215 ENSMUST00000129007 A630023P12Rik lincRNA Interval_126076 chr5 77239889 77240649 + 0 NA Intergenic Intergenic 12891 ENSMUSG00000107034.1 ENSMUSG00000107034 ENSMUST00000201959 Gm19060 processed_pseudogene Interval_63703 chr15 102942582 102943674 + 0 NA TTS (ENSMUSG00000086903.4) lincRNA-TTS (ENSMUSG00000086903.4) -2231 ENSMUSG00000099099.1 ENSMUSG00000099099 ENSMUST00000184010 Gm27337 misc_RNA Interval_129956 chr5 123295797 123297044 + 0 NA intron (ENSMUSG00000087063.1, intron 2 of 2) protein_coding-intron (ENSMUSG00000029442.18, intron 1 of 7) 13904 ENSMUSG00000087063.1 ENSMUSG00000087063 ENSMUST00000133476 Gm15857 antisense Interval_79410 chr18 31725348 31727300 + 0 NA Intergenic Intergenic -12391 ENSMUSG00000117533.1 ENSMUSG00000117533 ENSMUST00000234849 Gm50060 processed_pseudogene Interval_55731 chr14 99365846 99368228 + 0 NA Intergenic Intergenic -1020 ENSMUSG00000115746.1 ENSMUSG00000115746 ENSMUST00000227310 Gm49218 processed_pseudogene Interval_63779 chr15 103365424 103367204 + 0 NA exon (ENSMUSG00000000555.8, exon 1 of 30) protein_coding-exon (ENSMUSG00000000555.8, exon 1 of 30) -11757 ENSMUSG00000104327.1 ENSMUSG00000104327 ENSMUST00000193409 Gm37322 TEC Interval_69951 chr17 3450876 3451687 + 0 NA intron (ENSMUSG00000023800.15, intron 12 of 26) protein_coding-intron (ENSMUSG00000023800.15, intron 12 of 26) 11051 ENSMUSG00000115039.1 ENSMUSG00000115039 ENSMUST00000228135 Gm7043 processed_pseudogene Interval_130732 chr5 130023675 130024535 + 0 NA exon (ENSMUSG00000025533.15, exon 3 of 18) protein_coding-exon (ENSMUSG00000025533.15, exon 3 of 18) 240 ENSMUSG00000025533.15 ENSMUSG00000025533 ENSMUST00000162230 Asl protein_coding Interval_107733 chr3 112191843 112193154 + 0 NA Intergenic Intergenic 6543 ENSMUSG00000089017.1 ENSMUSG00000089017 ENSMUST00000158392 Gm25519 snoRNA Interval_93460 chr2 73236770 73237432 + 0 NA Intergenic Intergenic -22675 ENSMUSG00000027108.15 ENSMUSG00000027108 ENSMUST00000133228 Ola1 protein_coding Interval_76078 chr17 74752771 74753289 + 0 NA intron (ENSMUSG00000024078.7, intron 4 of 5) protein_coding-intron (ENSMUSG00000024078.7, intron 9 of 19) -17036 ENSMUSG00000024078.7 ENSMUSG00000024078 ENSMUST00000234264 Ttc27 protein_coding Interval_44124 chr13 41031078 41031443 + 0 NA intron (ENSMUSG00000021363.14, intron 11 of 12) protein_coding-intron (ENSMUSG00000021363.14, intron 11 of 12) 8511 ENSMUSG00000021363.14 ENSMUSG00000021363 ENSMUST00000224423 Mak protein_coding Interval_118906 chr4 134388354 134388616 + 0 NA Intergenic Intergenic -8838 ENSMUSG00000037366.14 ENSMUSG00000037366 ENSMUST00000145626 Pafah2 protein_coding Interval_121547 chr5 3355667 3356976 + 0 NA intron (ENSMUSG00000040274.11, intron 1 of 1) protein_coding-intron (ENSMUSG00000040274.11, intron 1 of 6) 86002 ENSMUSG00000106658.1 ENSMUSG00000106658 ENSMUST00000197473 Gm36548 lincRNA Interval_154964 chr8 25325347 25326450 + 0 NA Intergenic Intergenic -19628 ENSMUSG00000110140.1 ENSMUSG00000110140 ENSMUST00000209774 5430421F17Rik lincRNA Interval_111099 chr4 12025576 12026160 + 0 NA Intergenic Intergenic -1637 ENSMUSG00000085467.1 ENSMUSG00000085467 ENSMUST00000130117 Gm11842 antisense Interval_111955 chr4 32799704 32801004 + 0 NA promoter-TSS (ENSMUSG00000045854.4) protein_coding-promoter-TSS (ENSMUSG00000045854.4) 75 ENSMUSG00000045854.4 ENSMUSG00000045854 ENSMUST00000130321 Lyrm2 protein_coding Interval_9137 chr1 153953280 153954106 + 0 NA Intergenic Intergenic 14467 ENSMUSG00000100014.1 ENSMUSG00000100014 ENSMUST00000185385 Gm29290 lincRNA Interval_155397 chr8 33240861 33242146 + 0 NA intron (ENSMUSG00000031583.13, intron 26 of 27) protein_coding-intron (ENSMUSG00000031583.13, intron 32 of 33) -49207 ENSMUSG00000083557.1 ENSMUSG00000083557 ENSMUST00000119347 Gm6877 processed_pseudogene Interval_128714 chr5 114880034 114880681 + 0 NA TTS (ENSMUSG00000029564.12) protein_coding-TTS (ENSMUSG00000029564.12) -12332 ENSMUSG00000080707.1 ENSMUSG00000080707 ENSMUST00000119930 Gm13823 processed_pseudogene Interval_42514 chr13 14316029 14317011 + 0 NA exon (ENSMUSG00000021301.9, exon 10 of 29) protein_coding-exon (ENSMUSG00000021301.9, exon 10 of 29) 63053 ENSMUSG00000113981.1 ENSMUSG00000113981 ENSMUST00000222578 Gm47011 TEC Interval_101310 chr2 180305694 180306313 + 0 NA Intergenic Intergenic -16124 ENSMUSG00000038980.1 ENSMUSG00000038980 ENSMUST00000038529 Rbbp8nl protein_coding Interval_150930 chr7 116400999 116401256 + 0 NA intron (ENSMUSG00000030660.9, intron 2 of 5) protein_coding-intron (ENSMUSG00000030660.9, intron 3 of 32) -1410 ENSMUSG00000108500.1 ENSMUSG00000108500 ENSMUST00000206710 Gm45033 TEC Interval_107547 chr3 108415114 108416338 + 0 NA promoter-TSS (ENSMUSG00000068740.13) protein_coding-promoter-TSS (ENSMUSG00000068740.13) -13137 ENSMUSG00000068740.13 ENSMUSG00000068740 ENSMUST00000147565 Celsr2 protein_coding Interval_83632 chr19 3347767 3348012 + 0 NA intron (ENSMUSG00000024900.5, intron 1 of 6) protein_coding-intron (ENSMUSG00000024900.5, intron 1 of 18) -28455 ENSMUSG00000024900.5 ENSMUSG00000024900 ENSMUST00000238027 Cpt1a protein_coding Interval_100147 chr2 167326311 167327620 + 0 NA intron (ENSMUSG00000017929.13, intron 1 of 8) protein_coding-intron (ENSMUSG00000017929.13, intron 1 of 8) -13110 ENSMUSG00000017929.13 ENSMUSG00000017929 ENSMUST00000133557 B4galt5 protein_coding Interval_117858 chr4 126677157 126678266 + 0 NA promoter-TSS (ENSMUSG00000028837.8) protein_coding-promoter-TSS (ENSMUSG00000028837.8) 7 ENSMUSG00000028837.8 ENSMUSG00000028837 ENSMUST00000150372 Psmb2 protein_coding Interval_34149 chr11 120916294 120916842 + 0 NA intron (ENSMUSG00000048445.6, intron 3 of 18) protein_coding-intron (ENSMUSG00000048445.6, intron 3 of 18) -32513 ENSMUSG00000025161.16 ENSMUSG00000025161 ENSMUST00000134540 Slc16a3 protein_coding Interval_122197 chr5 19361115 19361462 + 0 NA intron (ENSMUSG00000040003.18, intron 1 of 2) protein_coding-intron (ENSMUSG00000040003.18, intron 1 of 22) -135120 ENSMUSG00000097626.5 ENSMUSG00000097626 ENSMUST00000197496 4921504A21Rik antisense Interval_75112 chr17 63547399 63548632 + 0 NA Intergenic Intergenic -22888 ENSMUSG00000117256.1 ENSMUSG00000117256 ENSMUST00000233628 Gm5497 processed_pseudogene Interval_40818 chr12 108612501 108613558 + 0 NA intron (ENSMUSG00000021262.15, intron 1 of 12) protein_coding-intron (ENSMUSG00000021262.15, intron 1 of 13) -45591 ENSMUSG00000065436.1 ENSMUSG00000065436 ENSMUST00000083502 Mir342 miRNA Interval_173956 chrX 115660320 115661010 + 0 NA Intergenic Intergenic -21471 ENSMUSG00000081124.1 ENSMUSG00000081124 ENSMUST00000119265 Gm14906 processed_pseudogene Interval_137590 chr6 73956425 73956731 + 0 NA Intergenic Intergenic -70729 ENSMUSG00000107646.1 ENSMUSG00000107646 ENSMUST00000203582 Gm44225 processed_pseudogene Interval_18141 chr10 82961211 82962063 + 0 NA Intergenic Intergenic 7293 ENSMUSG00000071151.3 ENSMUSG00000071151 ENSMUST00000095396 Gm4799 processed_pseudogene Interval_158706 chr8 85452304 85453011 + 0 NA Intergenic Intergenic -19843 ENSMUSG00000036934.9 ENSMUSG00000036934 ENSMUST00000210556 4921524J17Rik protein_coding Interval_91029 chr2 34538493 34539097 + 0 NA intron (ENSMUSG00000038696.14, intron 7 of 10) protein_coding-intron (ENSMUSG00000038696.14, intron 6 of 10) -26204 ENSMUSG00000081992.1 ENSMUSG00000081992 ENSMUST00000119822 Gm13408 processed_pseudogene Interval_25594 chr11 50024600 50025965 + 0 NA promoter-TSS (ENSMUSG00000020376.17) protein_coding-promoter-TSS (ENSMUSG00000020376.17) -65 ENSMUSG00000020376.17 ENSMUSG00000020376 ENSMUST00000143607 Rnf130 protein_coding Interval_67757 chr16 56891531 56892323 + 0 NA intron (ENSMUSG00000084999.2, intron 1 of 2) antisense-intron (ENSMUSG00000084999.2, intron 1 of 2) 5349 ENSMUSG00000084999.2 ENSMUSG00000084999 ENSMUST00000211219 Gm15839 antisense Interval_50323 chr14 11841797 11843110 + 0 NA intron (ENSMUSG00000021745.14, intron 2 of 3) protein_coding-intron (ENSMUSG00000021745.14, intron 2 of 29) -25141 ENSMUSG00000114431.1 ENSMUSG00000114431 ENSMUST00000224051 Gm48601 TEC Interval_77189 chr17 87225640 87226817 + 0 NA Intergenic Intergenic -31286 ENSMUSG00000117384.1 ENSMUSG00000117384 ENSMUST00000234580 C330024C12Rik lincRNA Interval_93195 chr2 71072116 71072809 + 0 NA intron (ENSMUSG00000041966.18, intron 2 of 4) protein_coding-intron (ENSMUSG00000041966.18, intron 4 of 14) 16718 ENSMUSG00000041966.18 ENSMUSG00000041966 ENSMUST00000132619 Dcaf17 protein_coding Interval_56021 chr14 104521989 104522940 + 0 NA intron (ENSMUSG00000022120.4, intron 1 of 4) protein_coding-intron (ENSMUSG00000022120.4, intron 1 of 5) 169 ENSMUSG00000022120.4 ENSMUSG00000022120 ENSMUST00000228210 Rnf219 protein_coding Interval_129044 chr5 117068141 117068535 + 0 NA Intergenic Intergenic 9526 ENSMUSG00000107327.1 ENSMUSG00000107327 ENSMUST00000201054 Gm7478 processed_pseudogene Interval_169745 chr9 100910085 100911175 + 0 NA intron (ENSMUSG00000037286.15, intron 3 of 7) protein_coding-intron (ENSMUSG00000037286.15, intron 22 of 32) 33539 ENSMUSG00000103624.1 ENSMUSG00000103624 ENSMUST00000193413 Gm3081 TEC Interval_76168 chr17 75839927 75840168 + 0 NA Intergenic Intergenic 6210 ENSMUSG00000117587.1 ENSMUSG00000117587 ENSMUST00000235034 Gm50099 processed_pseudogene Interval_68697 chr16 84802033 84802700 + 0 NA intron (ENSMUSG00000053062.16, intron 2 of 9) protein_coding-intron (ENSMUSG00000053062.16, intron 2 of 3) 8808 ENSMUSG00000053062.16 ENSMUSG00000053062 ENSMUST00000138054 Jam2 protein_coding Interval_131035 chr5 134688158 134689389 + 0 NA promoter-TSS (ENSMUSG00000029674.13) protein_coding-promoter-TSS (ENSMUSG00000029674.13) 12283 ENSMUSG00000072573.2 ENSMUSG00000072573 ENSMUST00000100641 Gm10369 antisense Interval_159915 chr8 105164141 105164349 + 0 NA promoter-TSS (ENSMUSG00000099465.1) lincRNA-promoter-TSS (ENSMUSG00000099465.1) -342 ENSMUSG00000099465.1 ENSMUSG00000099465 ENSMUST00000185540 Gm3830 lincRNA Interval_70613 chr17 12327765 12328370 + 0 NA TTS (ENSMUSG00000097350.2) bidirectional_promoter_lncRNA-TTS (ENSMUSG00000097350.2) -7339 ENSMUSG00000117337.1 ENSMUSG00000117337 ENSMUST00000233693 Gm49964 lincRNA Interval_112482 chr4 41522607 41523242 + 0 NA intron (ENSMUSG00000087623.1, intron 3 of 3) protein_coding-intron (ENSMUSG00000028439.14, intron 2 of 5) 2230 ENSMUSG00000087623.1 ENSMUSG00000087623 ENSMUST00000122839 Gm12404 processed_transcript Interval_48060 chr13 95638763 95639661 + 0 NA intron (ENSMUSG00000021676.10, intron 30 of 35) protein_coding-intron (ENSMUSG00000021676.10, intron 30 of 35) -20725 ENSMUSG00000048376.6 ENSMUSG00000048376 ENSMUST00000059193 F2r protein_coding Interval_87072 chr19 45952902 45953706 + 0 NA intron (ENSMUSG00000039901.10, intron 12 of 20) protein_coding-intron (ENSMUSG00000039901.10, intron 12 of 25) -16875 ENSMUSG00000039901.10 ENSMUSG00000039901 ENSMUST00000236730 Armh3 protein_coding Interval_5359 chr1 87865268 87865563 + 0 NA exon (ENSMUSG00000103996.1, exon 1 of 1) TEC-exon (ENSMUSG00000103996.1, exon 1 of 1) 342 ENSMUSG00000103996.1 ENSMUSG00000103996 ENSMUST00000191704 4833421G17Rik TEC Interval_87753 chr19 55639841 55640711 + 0 NA Intergenic Intergenic -101988 ENSMUSG00000024985.20 ENSMUSG00000024985 ENSMUST00000148666 Tcf7l2 protein_coding Interval_52 GL456212.1 87034 87862 + 0 NA NA NA NA NA Interval_87691 chr19 55072798 55073656 + 0 NA intron (ENSMUSG00000024978.11, intron 21 of 22) protein_coding-intron (ENSMUSG00000024978.11, intron 19 of 20) -26275 ENSMUSG00000118099.1 ENSMUSG00000118099 ENSMUST00000237370 Gm31356 antisense Interval_97117 chr2 131406335 131406620 + 0 NA Intergenic Intergenic 7485 ENSMUSG00000089113.1 ENSMUSG00000089113 ENSMUST00000158488 Gm22902 ribozyme Interval_173644 chrX 101428912 101430358 + 0 NA promoter-TSS (ENSMUSG00000031311.17) protein_coding-promoter-TSS (ENSMUSG00000031311.17) -15098 ENSMUSG00000031311.17 ENSMUSG00000031311 ENSMUST00000134783 Nono protein_coding Interval_157716 chr8 72485006 72485941 + 0 NA intron (ENSMUSG00000019731.13, intron 4 of 5) protein_coding-intron (ENSMUSG00000019731.13, intron 4 of 4) 7141 ENSMUSG00000019731.13 ENSMUSG00000019731 ENSMUST00000141352 Slc35e1 protein_coding Interval_155550 chr8 34285960 34287355 + 0 NA Intergenic Intergenic 9319 ENSMUSG00000080434.1 ENSMUSG00000080434 ENSMUST00000116784 Gm23177 miRNA Interval_66712 chr16 36537062 36537280 + 0 NA intron (ENSMUSG00000051980.13, intron 2 of 2) protein_coding-intron (ENSMUSG00000051980.13, intron 1 of 6) -24521 ENSMUSG00000089118.1 ENSMUSG00000089118 ENSMUST00000158493 Gm25902 misc_RNA Interval_162335 chr8 127214267 127214996 + 0 NA intron (ENSMUSG00000025812.18, intron 1 of 1) protein_coding-intron (ENSMUSG00000025812.18, intron 2 of 23) 43227 ENSMUSG00000025812.18 ENSMUSG00000025812 ENSMUST00000159940 Pard3 protein_coding Interval_29436 chr11 84008695 84009578 + 0 NA exon (ENSMUSG00000034940.15, exon 14 of 22) protein_coding-exon (ENSMUSG00000034940.15, exon 14 of 22) -10065 ENSMUSG00000034940.15 ENSMUSG00000034940 ENSMUST00000132887 Synrg protein_coding Interval_22298 chr11 8597721 8597936 + 0 NA intron (ENSMUSG00000020422.14, intron 3 of 30) protein_coding-intron (ENSMUSG00000020422.14, intron 3 of 30) 66853 ENSMUSG00000020422.14 ENSMUSG00000020422 ENSMUST00000134823 Tns3 protein_coding Interval_174707 chrX 163876397 163877165 + 0 NA Intergenic Intergenic -34620 ENSMUSG00000031367.15 ENSMUSG00000031367 ENSMUST00000140845 Ap1s2 protein_coding Interval_142850 chr6 146428950 146430398 + 0 NA intron (ENSMUSG00000030287.15, intron 1 of 18) protein_coding-intron (ENSMUSG00000030287.15, intron 2 of 56) 33933 ENSMUSG00000082120.1 ENSMUSG00000082120 ENSMUST00000117133 Gm15720 processed_pseudogene Interval_19247 chr10 95760120 95760688 + 0 NA intron (ENSMUSG00000101517.6, intron 1 of 5) lincRNA-intron (ENSMUSG00000101517.6, intron 1 of 5) 14327 ENSMUSG00000101517.6 ENSMUSG00000101517 ENSMUST00000185499 4732465J04Rik lincRNA Interval_134014 chr6 17717629 17717863 + 0 NA exon (ENSMUSG00000106822.1, exon 1 of 1) TEC-exon (ENSMUSG00000106822.1, exon 1 of 1) 168 ENSMUSG00000106822.1 ENSMUSG00000106822 ENSMUST00000202933 Gm43533 TEC Interval_46781 chr13 70345784 70346693 + 0 NA Intergenic Intergenic 76543 ENSMUSG00000114054.1 ENSMUSG00000114054 ENSMUST00000220989 Gm47706 processed_pseudogene Interval_19753 chr10 108505191 108505546 + 0 NA intron (ENSMUSG00000035864.14, intron 10 of 11) protein_coding-intron (ENSMUSG00000035864.14, intron 9 of 10) 22718 ENSMUSG00000112065.1 ENSMUSG00000112065 ENSMUST00000217917 Gm47466 processed_pseudogene Interval_62136 chr15 87858934 87859677 + 0 NA Intergenic Intergenic -63362 ENSMUSG00000098938.1 ENSMUSG00000098938 ENSMUST00000183709 Mir6393 miRNA Interval_11892 chr1 186808821 186809519 + 0 NA Intergenic Intergenic 59774 ENSMUSG00000097784.1 ENSMUSG00000097784 ENSMUST00000180869 A430105J06Rik lincRNA Interval_123781 chr5 35459687 35460174 + 0 NA Intergenic Intergenic 63832 ENSMUSG00000106970.1 ENSMUSG00000106970 ENSMUST00000201640 Gm43377 TEC Interval_5136 chr1 85933427 85934262 + 0 NA exon (ENSMUSG00000099767.1, exon 2 of 2) antisense-exon (ENSMUSG00000099767.1, exon 2 of 2) 3488 ENSMUSG00000099767.1 ENSMUSG00000099767 ENSMUST00000190367 Gm28884 antisense Interval_36294 chr12 40836781 40837847 + 0 NA intron (ENSMUSG00000035954.10, intron 50 of 51) protein_coding-intron (ENSMUSG00000035954.10, intron 50 of 52) -38223 ENSMUSG00000113435.1 ENSMUSG00000113435 ENSMUST00000221545 Gm19441 processed_pseudogene Interval_135028 chr6 34780148 34781153 + 0 NA promoter-TSS (ENSMUSG00000038836.15) protein_coding-promoter-TSS (ENSMUSG00000038836.15) 218 ENSMUSG00000038836.15 ENSMUSG00000038836 ENSMUST00000115009 Agbl3 protein_coding Interval_1235 chr1 17850455 17850746 + 0 NA Intergenic Intergenic -45183 ENSMUSG00000099895.1 ENSMUSG00000099895 ENSMUST00000189853 Gm28153 antisense Interval_82710 chr18 76111348 76112026 + 0 NA intron (ENSMUSG00000044646.15, intron 1 of 2) protein_coding-intron (ENSMUSG00000044646.15, intron 3 of 4) -13216 ENSMUSG00000117797.1 ENSMUSG00000117797 ENSMUST00000236092 2900057B20Rik antisense Interval_10712 chr1 173418512 173419362 + 0 NA promoter-TSS (ENSMUSG00000037860.15) protein_coding-promoter-TSS (ENSMUSG00000037860.15) -36417 ENSMUSG00000037860.15 ENSMUSG00000037860 ENSMUST00000135370 Aim2 protein_coding Interval_143955 chr7 18477797 18478050 + 0 NA intron (ENSMUSG00000070799.4, intron 4 of 4) protein_coding-intron (ENSMUSG00000070799.4, intron 4 of 4) 6254 ENSMUSG00000070799.4 ENSMUSG00000070799 ENSMUST00000094798 Psg26 protein_coding Interval_89114 chr2 16669887 16670249 + 0 NA intron (ENSMUSG00000026748.13, intron 5 of 8) protein_coding-intron (ENSMUSG00000026748.13, intron 9 of 13) 31372 ENSMUSG00000026748.13 ENSMUSG00000026748 ENSMUST00000126173 Plxdc2 protein_coding Interval_73042 chr17 34325330 34325611 + 0 NA promoter-TSS (ENSMUSG00000067341.6) protein_coding-promoter-TSS (ENSMUSG00000067341.6) -195 ENSMUSG00000067341.6 ENSMUSG00000067341 ENSMUST00000050325 H2-Eb2 protein_coding Interval_166349 chr9 58496677 58497081 + 0 NA intron (ENSMUSG00000066607.5, intron 1 of 1) protein_coding-intron (ENSMUSG00000066607.5, intron 2 of 2) 7917 ENSMUSG00000066607.5 ENSMUSG00000066607 ENSMUST00000216294 Insyn1 protein_coding Interval_45135 chr13 52582586 52583715 + 0 NA promoter-TSS (ENSMUSG00000021457.14) protein_coding-promoter-TSS (ENSMUSG00000021457.14) -353 ENSMUSG00000021457.14 ENSMUSG00000021457 ENSMUST00000140339 Syk protein_coding Interval_142531 chr6 143107453 143109309 + 0 NA TTS (ENSMUSG00000108094.1) lincRNA-TTS (ENSMUSG00000108094.1) -8291 ENSMUSG00000030279.15 ENSMUSG00000030279 ENSMUST00000205079 C2cd5 protein_coding Interval_161247 chr8 119173209 119173433 + 0 NA intron (ENSMUSG00000031841.19, intron 1 of 3) protein_coding-intron (ENSMUSG00000031841.19, intron 7 of 13) 21856 ENSMUSG00000031841.19 ENSMUSG00000031841 ENSMUST00000151842 Cdh13 protein_coding Interval_89579 chr2 22949503 22949832 + 0 NA TTS (ENSMUSG00000058835.14) protein_coding-TTS (ENSMUSG00000058835.14) -35835 ENSMUSG00000081861.1 ENSMUSG00000081861 ENSMUST00000121960 Gm14441 processed_pseudogene Interval_5899 chr1 93035651 93036167 + 0 NA intron (ENSMUSG00000014602.15, intron 36 of 47) protein_coding-intron (ENSMUSG00000014602.15, intron 36 of 46) -8704 ENSMUSG00000014602.15 ENSMUSG00000014602 ENSMUST00000186861 Kif1a protein_coding Interval_78588 chr18 14951231 14952518 + 0 NA Intergenic Intergenic -27763 ENSMUSG00000117436.1 ENSMUSG00000117436 ENSMUST00000234412 Gm9474 processed_pseudogene Interval_20804 chr10 121088962 121090977 + 0 NA intron (ENSMUSG00000020218.11, intron 6 of 9) protein_coding-intron (ENSMUSG00000020218.11, intron 6 of 9) 25276 ENSMUSG00000112780.1 ENSMUSG00000112780 ENSMUST00000217935 Gm48410 lincRNA Interval_151622 chr7 125427029 125427818 + 0 NA Intergenic Intergenic -9309 ENSMUSG00000108814.1 ENSMUSG00000108814 ENSMUST00000206549 Gm30717 lincRNA Interval_123626 chr5 33929825 33930408 + 0 NA intron (ENSMUSG00000029111.7, intron 1 of 2) protein_coding-intron (ENSMUSG00000029111.7, intron 1 of 10) 6134 ENSMUSG00000029111.7 ENSMUSG00000029111 ENSMUST00000132942 Nelfa protein_coding Interval_82676 chr18 75846352 75846959 + 0 NA intron (ENSMUSG00000044646.15, intron 1 of 5) protein_coding-intron (ENSMUSG00000044646.15, intron 1 of 4) 26440 ENSMUSG00000044646.15 ENSMUSG00000044646 ENSMUST00000167921 Zbtb7c protein_coding Interval_12729 chr10 4535974 4536424 + 0 NA intron (ENSMUSG00000019767.12, intron 2 of 2) protein_coding-intron (ENSMUSG00000019767.12, intron 6 of 10) 3204 ENSMUSG00000019767.12 ENSMUSG00000019767 ENSMUST00000157064 Ccdc170 protein_coding Interval_165194 chr9 45159354 45159740 + 0 NA Intergenic Intergenic 10399 ENSMUSG00000111811.1 ENSMUSG00000111811 ENSMUST00000215874 Gm39327 lincRNA Interval_27155 chr11 63427892 63428335 + 0 NA Intergenic Intergenic 14944 ENSMUSG00000085113.1 ENSMUSG00000085113 ENSMUST00000151765 B130011K05Rik lincRNA Interval_51105 chr14 23234437 23234832 + 0 NA Intergenic Intergenic -86510 ENSMUSG00000114803.1 ENSMUSG00000114803 ENSMUST00000225611 Gm46443 processed_pseudogene Interval_113892 chr4 59635696 59635929 + 0 NA intron (ENSMUSG00000045071.14, intron 1 of 3) protein_coding-intron (ENSMUSG00000045071.14, intron 1 of 2) 41502 ENSMUSG00000028383.17 ENSMUSG00000028383 ENSMUST00000128792 Hsdl2 protein_coding Interval_110008 chr3 152435204 152435397 + 0 NA promoter-TSS (ENSMUSG00000039068.16) protein_coding-promoter-TSS (ENSMUSG00000039068.16) 39168 ENSMUSG00000039068.16 ENSMUSG00000039068 ENSMUST00000135044 Zzz3 protein_coding Interval_158543 chr8 84355591 84358212 + 0 NA exon (ENSMUSG00000034656.18, exon 2 of 49) protein_coding-exon (ENSMUSG00000034656.18, exon 2 of 49) 18262 ENSMUSG00000034656.18 ENSMUSG00000034656 ENSMUST00000130507 Cacna1a protein_coding Interval_97887 chr2 144808098 144808402 + 0 NA Intergenic Intergenic -15406 ENSMUSG00000027431.5 ENSMUSG00000027431 ENSMUST00000028918 Scp2d1 protein_coding Interval_35211 chr12 18231389 18232207 + 0 NA intron (ENSMUSG00000113956.1, intron 1 of 2) processed_pseudogene-intron (ENSMUSG00000113956.1, intron 1 of 2) 7276 ENSMUSG00000113956.1 ENSMUSG00000113956 ENSMUST00000221258 Gm19368 processed_pseudogene Interval_66434 chr16 33832636 33834466 + 0 NA intron (ENSMUSG00000022817.15, intron 1 of 14) protein_coding-intron (ENSMUSG00000022817.15, intron 1 of 14) -9271 ENSMUSG00000116916.1 ENSMUSG00000116916 ENSMUST00000231807 Gm34967 processed_pseudogene Interval_137304 chr6 71203334 71203589 + 0 NA intron (ENSMUSG00000054422.7, intron 3 of 3) protein_coding-intron (ENSMUSG00000054422.7, intron 3 of 3) 3634 ENSMUSG00000054422.7 ENSMUSG00000054422 ENSMUST00000067492 Fabp1 protein_coding Interval_41731 chr12 118505948 118506481 + 0 NA Intergenic Intergenic -1180 ENSMUSG00000065348.1 ENSMUSG00000065348 ENSMUST00000083414 Gm25577 snRNA Interval_124811 chr5 54762778 54763483 + 0 NA Intergenic Intergenic -44204 ENSMUSG00000106126.1 ENSMUSG00000106126 ENSMUST00000197634 Gm43781 TEC Interval_23217 chr11 20607867 20608797 + 0 NA intron (ENSMUSG00000049800.13, intron 1 of 1) protein_coding-intron (ENSMUSG00000049800.13, intron 1 of 1) -33143 ENSMUSG00000083555.1 ENSMUSG00000083555 ENSMUST00000121890 Gm12035 processed_pseudogene Interval_83005 chr18 80316065 80317414 + 0 NA intron (ENSMUSG00000059852.7, intron 3 of 3) protein_coding-intron (ENSMUSG00000059852.7, intron 3 of 3) -6596 ENSMUSG00000097593.2 ENSMUSG00000097593 ENSMUST00000181877 Gm26676 antisense Interval_139259 chr6 97616074 97617988 + 0 NA intron (ENSMUSG00000030064.16, intron 1 of 7) protein_coding-intron (ENSMUSG00000030064.16, intron 1 of 23) -35939 ENSMUSG00000108093.1 ENSMUSG00000108093 ENSMUST00000204031 Gm44102 TEC Interval_47050 chr13 74794307 74795343 + 0 NA intron (ENSMUSG00000021585.10, intron 2 of 20) protein_coding-intron (ENSMUSG00000021585.10, intron 2 of 30) 13696 ENSMUSG00000021585.10 ENSMUSG00000021585 ENSMUST00000223123 Cast protein_coding Interval_147416 chr7 66689070 66690350 + 0 NA promoter-TSS (ENSMUSG00000030509.17) protein_coding-promoter-TSS (ENSMUSG00000030509.17) -195 ENSMUSG00000030509.17 ENSMUSG00000030509 ENSMUST00000208059 Asb7 protein_coding Interval_131542 chr5 137973289 137974158 + 0 NA Intergenic Intergenic -7845 ENSMUSG00000037053.6 ENSMUSG00000037053 ENSMUST00000199145 Azgp1 protein_coding Interval_12252 chr1 191138349 191139598 + 0 NA Intergenic Intergenic 6316 ENSMUSG00000102777.1 ENSMUSG00000102777 ENSMUST00000195344 Gm38161 lincRNA Interval_139484 chr6 100476358 100477354 + 0 NA Intergenic Intergenic 17958 ENSMUSG00000087929.1 ENSMUSG00000087929 ENSMUST00000157304 Gm23234 snoRNA Interval_150164 chr7 107526284 107526797 + 0 NA intron (ENSMUSG00000062542.11, intron 2 of 2) protein_coding-intron (ENSMUSG00000062542.11, intron 6 of 6) 22478 ENSMUSG00000062542.11 ENSMUSG00000062542 ENSMUST00000127444 Syt9 protein_coding Interval_74667 chr17 55789442 55789809 + 0 NA intron (ENSMUSG00000032915.6, intron 5 of 16) protein_coding-intron (ENSMUSG00000032915.6, intron 5 of 16) -21154 ENSMUSG00000117045.1 ENSMUSG00000117045 ENSMUST00000233119 Gm18365 processed_pseudogene Interval_37001 chr12 56222344 56222815 + 0 NA Intergenic Intergenic 29865 ENSMUSG00000077455.1 ENSMUSG00000077455 ENSMUST00000104267 Gm25917 snoRNA Interval_55770 chr14 99874647 99875605 + 0 NA exon (ENSMUSG00000072294.5, exon 7 of 7) protein_coding-exon (ENSMUSG00000072294.5, exon 7 of 7) 25265 ENSMUSG00000072294.5 ENSMUSG00000072294 ENSMUST00000226544 Klf12 protein_coding Interval_71216 chr17 21231604 21232865 + 0 NA exon (ENSMUSG00000057203.3, exon 2 of 2) protein_coding-exon (ENSMUSG00000057203.3, exon 2 of 2) 6147 ENSMUSG00000057203.3 ENSMUSG00000057203 ENSMUST00000079633 Vmn1r234 protein_coding Interval_27491 chr11 68202248 68203645 + 0 NA intron (ENSMUSG00000020903.13, intron 6 of 6) protein_coding-intron (ENSMUSG00000020903.13, intron 7 of 7) -6793 ENSMUSG00000087242.2 ENSMUSG00000087242 ENSMUST00000152781 C78197 antisense Interval_138659 chr6 90897418 90898015 + 0 NA intron (ENSMUSG00000034312.15, intron 1 of 15) protein_coding-intron (ENSMUSG00000034312.15, intron 1 of 15) -8103 ENSMUSG00000099662.1 ENSMUSG00000099662 ENSMUST00000117103 Ppp1r2-ps2 processed_pseudogene Interval_109361 chr3 139813515 139813773 + 0 NA promoter-TSS (ENSMUSG00000105880.1) lincRNA-promoter-TSS (ENSMUSG00000105880.1) -880 ENSMUSG00000105880.1 ENSMUSG00000105880 ENSMUST00000197774 Gm43678 lincRNA Interval_4954 chr1 82913278 82914596 + 0 NA exon (ENSMUSG00000113880.1, exon 1 of 1) protein_coding-exon (ENSMUSG00000113880.1, exon 1 of 1) 612 ENSMUSG00000113880.1 ENSMUSG00000113880 ENSMUST00000220768 A030005L19Rik protein_coding Interval_129147 chr5 117837037 117837553 + 0 NA intron (ENSMUSG00000029361.18, intron 1 of 3) protein_coding-intron (ENSMUSG00000029361.18, intron 1 of 3) -29824 ENSMUSG00000029361.18 ENSMUSG00000029361 ENSMUST00000138554 Nos1 protein_coding Interval_99513 chr2 162872416 162872867 + 0 NA Intergenic Intergenic -4447 ENSMUSG00000086030.1 ENSMUSG00000086030 ENSMUST00000128846 Gm14255 lincRNA Interval_133638 chr6 7913716 7914389 + 0 NA Intergenic Intergenic 34489 ENSMUSG00000084418.1 ENSMUSG00000084418 ENSMUST00000122469 Gm22276 snoRNA Interval_109388 chr3 141464674 141466371 + 0 NA promoter-TSS (ENSMUSG00000059921.15) protein_coding-promoter-TSS (ENSMUSG00000059921.15) -77 ENSMUSG00000059921.15 ENSMUSG00000059921 ENSMUST00000123631 Unc5c protein_coding Interval_23817 chr11 26536869 26537367 + 0 NA intron (ENSMUSG00000064090.14, intron 2 of 4) protein_coding-intron (ENSMUSG00000064090.14, intron 5 of 12) -56108 ENSMUSG00000068314.5 ENSMUSG00000068314 ENSMUST00000089614 Gm6899 TEC Interval_127804 chr5 107939216 107940374 + 0 NA intron (ENSMUSG00000029270.10, intron 1 of 4) protein_coding-intron (ENSMUSG00000029270.10, intron 1 of 4) 32450 ENSMUSG00000077426.1 ENSMUSG00000077426 ENSMUST00000104238 Gm26387 snoRNA Interval_148777 chr7 87025733 87026749 + 0 NA intron (ENSMUSG00000090362.2, intron 5 of 5) protein_coding-intron (ENSMUSG00000090362.2, intron 5 of 5) 30126 ENSMUSG00000090362.2 ENSMUSG00000090362 ENSMUST00000232908 Vmn2r79 protein_coding Interval_81460 chr18 60894251 60894484 + 0 NA Intergenic Intergenic -17413 ENSMUSG00000036412.5 ENSMUSG00000036412 ENSMUST00000040359 Arsi protein_coding Interval_11355 chr1 181175380 181175715 + 0 NA exon (ENSMUSG00000038733.14, exon 14 of 14) protein_coding-exon (ENSMUSG00000038733.14, exon 14 of 14) 30854 ENSMUSG00000062169.13 ENSMUSG00000062169 ENSMUST00000111057 Cnih4 protein_coding Interval_30960 chr11 97437790 97438213 + 0 NA intron (ENSMUSG00000049807.16, intron 2 of 2) protein_coding-intron (ENSMUSG00000049807.16, intron 1 of 23) 1716 ENSMUSG00000049807.16 ENSMUSG00000049807 ENSMUST00000093940 Arhgap23 protein_coding Interval_46406 chr13 64832864 64833962 + 0 NA intron (ENSMUSG00000033063.8, intron 3 of 23) protein_coding-intron (ENSMUSG00000033063.8, intron 3 of 23) -74952 ENSMUSG00000033063.8 ENSMUSG00000033063 ENSMUST00000222618 Cntnap3 protein_coding Interval_58286 chr15 31650459 31650930 + 0 NA Intergenic Intergenic 4872 ENSMUSG00000115188.1 ENSMUSG00000115188 ENSMUST00000227734 Gm46522 processed_pseudogene Interval_25734 chr11 51213343 51214788 + 0 NA exon (ENSMUSG00000086646.7, exon 3 of 5) lincRNA-exon (ENSMUSG00000086646.7, exon 3 of 5) 6353 ENSMUSG00000086646.7 ENSMUSG00000086646 ENSMUST00000137964 Platr20 lincRNA Interval_32886 chr11 112818253 112818470 + 0 NA Intergenic Intergenic -6818 ENSMUSG00000020624.3 ENSMUSG00000020624 ENSMUST00000153429 4933434M16Rik lincRNA Interval_2289 chr1 37694494 37695027 + 0 NA exon (ENSMUSG00000102650.1, exon 1 of 1) TEC-exon (ENSMUSG00000102650.1, exon 1 of 1) 1904 ENSMUSG00000102650.1 ENSMUSG00000102650 ENSMUST00000192480 Gm19863 TEC Interval_50778 chr14 19786627 19786947 + 0 NA intron (ENSMUSG00000021806.4, intron 8 of 16) protein_coding-intron (ENSMUSG00000021806.4, intron 8 of 20) 35503 ENSMUSG00000021806.4 ENSMUSG00000021806 ENSMUST00000224057 Nid2 protein_coding Interval_60759 chr15 76586117 76586704 + 0 NA intron (ENSMUSG00000022550.18, intron 1 of 13) protein_coding-intron (ENSMUSG00000022550.18, intron 1 of 3) 1886 ENSMUSG00000022550.18 ENSMUSG00000022550 ENSMUST00000160094 Adck5 protein_coding Interval_130001 chr5 123635948 123636147 + 0 NA exon (ENSMUSG00000049550.17, exon 1 of 1) protein_coding-exon (ENSMUSG00000049550.17, exon 1 of 1) 227 ENSMUSG00000049550.17 ENSMUSG00000049550 ENSMUST00000199018 Clip1 protein_coding Interval_153772 chr8 8212479 8212712 + 0 NA intron (ENSMUSG00000109127.1, intron 2 of 5) lincRNA-intron (ENSMUSG00000109127.1, intron 2 of 5) -122482 ENSMUSG00000109056.1 ENSMUSG00000109056 ENSMUST00000208485 A630009H07Rik lincRNA Interval_88285 chr2 3350884 3351699 + 0 NA exon (ENSMUSG00000103786.1, exon 1 of 1) sense_intronic-exon (ENSMUSG00000103786.1, exon 1 of 1) 2713 ENSMUSG00000103786.1 ENSMUSG00000103786 ENSMUST00000193499 Gm37525 sense_intronic Interval_101592 chr3 7464501 7465299 + 0 NA Intergenic Intergenic 10379 ENSMUSG00000102268.1 ENSMUSG00000102268 ENSMUST00000193161 Gm8826 processed_pseudogene Interval_66119 chr16 31750495 31750787 + 0 NA intron (ENSMUSG00000022770.17, intron 5 of 24) protein_coding-intron (ENSMUSG00000022770.17, intron 5 of 24) -3299 ENSMUSG00000089011.1 ENSMUSG00000089011 ENSMUST00000158386 Gm24879 snoRNA Interval_121966 chr5 12688370 12688729 + 0 NA Intergenic Intergenic -17821 ENSMUSG00000105237.1 ENSMUSG00000105237 ENSMUST00000197223 Gm42580 processed_pseudogene Interval_145228 chr7 30789870 30790358 + 0 NA promoter-TSS (ENSMUSG00000074199.7) protein_coding-promoter-TSS (ENSMUSG00000074199.7) 2209 ENSMUSG00000074199.7 ENSMUSG00000074199 ENSMUST00000188036 Krtdap protein_coding Interval_62091 chr15 86411089 86412010 + 0 NA intron (ENSMUSG00000051864.10, intron 11 of 12) protein_coding-intron (ENSMUSG00000051864.10, intron 11 of 12) 63549 ENSMUSG00000115918.1 ENSMUSG00000115918 ENSMUST00000229685 A930001M01Rik antisense Interval_67900 chr16 59080274 59080615 + 0 NA Intergenic Intergenic -2439 ENSMUSG00000064006.6 ENSMUSG00000064006 ENSMUST00000071243 Olfr190 protein_coding Interval_70593 chr17 12194902 12196066 + 0 NA intron (ENSMUSG00000023827.8, intron 1 of 6) protein_coding-intron (ENSMUSG00000023827.8, intron 2 of 8) 5563 ENSMUSG00000063911.4 ENSMUSG00000063911 ENSMUST00000074412 Tdgf1-ps2 processed_pseudogene Interval_111722 chr4 26725125 26725510 + 0 NA Intergenic Intergenic -19868 ENSMUSG00000086257.1 ENSMUSG00000086257 ENSMUST00000154459 4930548K13Rik lincRNA Interval_8111 chr1 135780285 135781554 + 0 NA intron (ENSMUSG00000026418.16, intron 1 of 4) protein_coding-intron (ENSMUSG00000026418.16, intron 1 of 4) 1485 ENSMUSG00000026418.16 ENSMUSG00000026418 ENSMUST00000129217 Tnni1 protein_coding Interval_17604 chr10 78127013 78127236 + 0 NA intron (ENSMUSG00000112662.1, intron 2 of 3) lincRNA-intron (ENSMUSG00000112662.1, intron 2 of 3) 10973 ENSMUSG00000112662.1 ENSMUSG00000112662 ENSMUST00000218616 Gm47922 lincRNA Interval_130685 chr5 129750047 129750322 + 0 NA intron (ENSMUSG00000029432.12, intron 6 of 7) protein_coding-intron (ENSMUSG00000029432.12, intron 7 of 9) 22012 ENSMUSG00000086916.2 ENSMUSG00000086916 ENSMUST00000199631 Gm15903 sense_intronic Interval_152557 chr7 134405923 134406151 + 0 NA intron (ENSMUSG00000030994.16, intron 2 of 3) protein_coding-intron (ENSMUSG00000030994.16, intron 2 of 3) 92947 ENSMUSG00000030994.16 ENSMUSG00000030994 ENSMUST00000205334 D7Ertd443e protein_coding Interval_126309 chr5 86413131 86413550 + 0 NA intron (ENSMUSG00000072845.3, intron 8 of 8) protein_coding-intron (ENSMUSG00000072845.3, intron 8 of 8) 5005 ENSMUSG00000072845.3 ENSMUSG00000072845 ENSMUST00000198504 Tmprss11a protein_coding Interval_158600 chr8 84699776 84700413 + 0 NA TTS (ENSMUSG00000001909.16) protein_coding-TTS (ENSMUSG00000001909.16) -1388 ENSMUSG00000034041.5 ENSMUSG00000034041 ENSMUST00000238338 Lyl1 protein_coding Interval_139507 chr6 100621402 100622026 + 0 NA intron (ENSMUSG00000035378.17, intron 6 of 7) protein_coding-intron (ENSMUSG00000035378.17, intron 6 of 7) 5226 ENSMUSG00000108019.1 ENSMUSG00000108019 ENSMUST00000203525 Gm44108 processed_pseudogene Interval_63666 chr15 102665348 102665934 + 0 NA TTS (ENSMUSG00000062683.11) protein_coding-TTS (ENSMUSG00000062683.11) 2102 ENSMUSG00000062683.11 ENSMUSG00000062683 ENSMUST00000186952 Atp5g2 protein_coding Interval_161678 chr8 121966598 121967708 + 0 NA intron (ENSMUSG00000025316.16, intron 1 of 4) protein_coding-intron (ENSMUSG00000025316.16, intron 1 of 12) 6669 ENSMUSG00000091952.3 ENSMUSG00000091952 ENSMUST00000174536 Gm17709 processed_pseudogene Interval_122888 chr5 26931297 26933309 + 0 NA intron (ENSMUSG00000061576.15, intron 1 of 25) protein_coding-intron (ENSMUSG00000061576.15, intron 1 of 25) -72202 ENSMUSG00000080941.1 ENSMUSG00000080941 ENSMUST00000119293 Gm16056 processed_pseudogene Interval_46016 chr13 60125890 60126330 + 0 NA Intergenic Intergenic 16995 ENSMUSG00000114531.1 ENSMUSG00000114531 ENSMUST00000225586 A530065N20Rik lincRNA Interval_84997 chr19 21104487 21105084 + 0 NA promoter-TSS (ENSMUSG00000118047.1) lincRNA-promoter-TSS (ENSMUSG00000118047.1) 75 ENSMUSG00000118047.1 ENSMUSG00000118047 ENSMUST00000237768 4930554I06Rik lincRNA Interval_17864 chr10 80474970 80475748 + 0 NA promoter-TSS (ENSMUSG00000089228.1) snRNA-promoter-TSS (ENSMUSG00000089228.1) -993 ENSMUSG00000089228.1 ENSMUSG00000089228 ENSMUST00000158603 Gm25044 snRNA Interval_156619 chr8 54822816 54823460 + 0 NA intron (ENSMUSG00000039375.16, intron 2 of 4) protein_coding-intron (ENSMUSG00000039375.16, intron 2 of 4) -43123 ENSMUSG00000084498.1 ENSMUSG00000084498 ENSMUST00000122549 n-R5s98 rRNA Interval_101253 chr2 179875207 179875820 + 0 NA intron (ENSMUSG00000000305.12, intron 8 of 15) protein_coding-intron (ENSMUSG00000000305.12, intron 8 of 15) 98350 ENSMUSG00000000305.12 ENSMUSG00000000305 ENSMUST00000098996 Cdh4 protein_coding Interval_148540 chr7 82263324 82265462 + 0 NA intron (ENSMUSG00000030638.13, intron 2 of 6) protein_coding-intron (ENSMUSG00000030638.13, intron 2 of 8) -77875 ENSMUSG00000109479.1 ENSMUSG00000109479 ENSMUST00000208587 Gm44919 TEC Interval_15196 chr10 43284760 43284964 + 0 NA intron (ENSMUSG00000038240.13, intron 1 of 7) protein_coding-intron (ENSMUSG00000038240.13, intron 1 of 7) -34498 ENSMUSG00000089673.1 ENSMUSG00000089673 ENSMUST00000159442 Gm16546 processed_pseudogene Interval_98580 chr2 153378887 153379510 + 0 NA intron (ENSMUSG00000042548.14, intron 3 of 11) protein_coding-intron (ENSMUSG00000042548.14, intron 4 of 12) -33125 ENSMUSG00000073236.4 ENSMUSG00000073236 ENSMUST00000139636 2500004C02Rik processed_transcript Interval_8056 chr1 135478676 135479508 + 0 NA intron (ENSMUSG00000009418.16, intron 6 of 30) protein_coding-intron (ENSMUSG00000009418.16, intron 3 of 29) 2322 ENSMUSG00000102474.1 ENSMUSG00000102474 ENSMUST00000193434 2610012C04Rik TEC Interval_98698 chr2 154380539 154381177 + 0 NA intron (ENSMUSG00000027488.12, intron 4 of 7) protein_coding-intron (ENSMUSG00000027488.12, intron 4 of 7) -26514 ENSMUSG00000027487.11 ENSMUSG00000027487 ENSMUST00000137918 Cdk5rap1 protein_coding Interval_36841 chr12 54568270 54568915 + 0 NA Intergenic Intergenic -51513 ENSMUSG00000113947.1 ENSMUSG00000113947 ENSMUST00000223133 Gm10465 lincRNA Interval_39966 chr12 100142254 100143319 + 0 NA intron (ENSMUSG00000021179.8, intron 5 of 13) protein_coding-intron (ENSMUSG00000021179.8, intron 5 of 13) -13014 ENSMUSG00000021179.8 ENSMUSG00000021179 ENSMUST00000221954 Nrde2 protein_coding Interval_10574 chr1 171960589 171961218 + 0 NA Intergenic Intergenic -41547 ENSMUSG00000104413.1 ENSMUSG00000104413 ENSMUST00000191636 Gm37065 antisense Interval_85400 chr19 25496283 25496495 + 0 NA Intergenic Intergenic 2552 ENSMUSG00000117720.1 ENSMUSG00000117720 ENSMUST00000238117 Gm5249 processed_pseudogene Interval_78247 chr18 10684252 10684448 + 0 NA intron (ENSMUSG00000002475.16, intron 3 of 8) protein_coding-intron (ENSMUSG00000002475.16, intron 3 of 8) -20032 ENSMUSG00000002475.16 ENSMUSG00000002475 ENSMUST00000234419 Abhd3 protein_coding Interval_89837 chr2 25885047 25885456 + 0 NA intron (ENSMUSG00000058740.14, intron 2 of 31) protein_coding-intron (ENSMUSG00000058740.14, intron 2 of 31) 21283 ENSMUSG00000058740.14 ENSMUSG00000058740 ENSMUST00000199269 Kcnt1 protein_coding Interval_106184 chr3 94412549 94413791 + 0 NA promoter-TSS (ENSMUSG00000041912.12) protein_coding-promoter-TSS (ENSMUSG00000041912.12) -147 ENSMUSG00000041912.12 ENSMUSG00000041912 ENSMUST00000197495 Tdrkh protein_coding Interval_66558 chr16 35074482 35074693 + 0 NA intron (ENSMUSG00000035376.10, intron 1 of 3) protein_coding-intron (ENSMUSG00000035376.10, intron 3 of 6) 25972 ENSMUSG00000035376.10 ENSMUSG00000035376 ENSMUST00000231556 Hacd2 protein_coding Interval_57938 chr15 25641338 25641562 + 0 NA intron (ENSMUSG00000022272.17, intron 1 of 21) protein_coding-intron (ENSMUSG00000022272.17, intron 1 of 40) 6823 ENSMUSG00000115252.1 ENSMUSG00000115252 ENSMUST00000228949 Gm48996 TEC Interval_19991 chr10 111746984 111747431 + 0 NA intron (ENSMUSG00000112430.1, intron 3 of 3) lincRNA-intron (ENSMUSG00000112430.1, intron 3 of 3) -20571 ENSMUSG00000112706.1 ENSMUSG00000112706 ENSMUST00000219399 Gm46193 processed_pseudogene Interval_169803 chr9 101639990 101640248 + 0 NA Intergenic Intergenic 117586 ENSMUSG00000111696.1 ENSMUSG00000111696 ENSMUST00000215480 Gm47932 processed_pseudogene Interval_45319 chr13 54330869 54332701 + 0 NA Intergenic Intergenic -3905 ENSMUSG00000113404.1 ENSMUSG00000113404 ENSMUST00000220818 Gm48622 lincRNA Interval_145233 chr7 30818367 30818606 + 0 NA TTS (ENSMUSG00000051314.11) protein_coding-TTS (ENSMUSG00000051314.11) 2491 ENSMUSG00000051314.11 ENSMUSG00000051314 ENSMUST00000186059 Ffar2 protein_coding Interval_19401 chr10 98961613 98961856 + 0 NA intron (ENSMUSG00000019943.10, intron 1 of 8) protein_coding-intron (ENSMUSG00000019943.10, intron 1 of 20) -29146 ENSMUSG00000019943.10 ENSMUSG00000019943 ENSMUST00000218419 Atp2b1 protein_coding Interval_121216 chr4 154113169 154113566 + 0 NA intron (ENSMUSG00000029026.17, intron 1 of 13) protein_coding-intron (ENSMUSG00000029026.17, intron 1 of 13) 19888 ENSMUSG00000087071.1 ENSMUSG00000087071 ENSMUST00000143429 Trp73os antisense Interval_145007 chr7 29391448 29392316 + 0 NA intron (ENSMUSG00000030583.16, intron 5 of 22) protein_coding-intron (ENSMUSG00000030583.16, intron 5 of 22) -14277 ENSMUSG00000030583.16 ENSMUSG00000030583 ENSMUST00000183085 Sipa1l3 protein_coding Interval_146960 chr7 56287625 56287859 + 0 NA intron (ENSMUSG00000030450.11, intron 6 of 22) protein_coding-intron (ENSMUSG00000030450.11, intron 6 of 23) -44592 ENSMUSG00000108773.1 ENSMUSG00000108773 ENSMUST00000206278 Gm44506 antisense Interval_53693 chr14 60919319 60919505 + 0 NA Intergenic Intergenic 118479 ENSMUSG00000060548.13 ENSMUSG00000060548 ENSMUST00000225730 Tnfrsf19 protein_coding Interval_139211 chr6 97221328 97222587 + 0 NA intron (ENSMUSG00000035199.6, intron 1 of 2) protein_coding-intron (ENSMUSG00000035199.6, intron 1 of 2) 11268 ENSMUSG00000035199.6 ENSMUSG00000035199 ENSMUST00000044681 Arl6ip5 protein_coding Interval_33731 chr11 118147634 118148119 + 0 NA intron (ENSMUSG00000017132.17, intron 12 of 13) protein_coding-intron (ENSMUSG00000017132.17, intron 12 of 13) 33021 ENSMUSG00000085511.1 ENSMUSG00000085511 ENSMUST00000134069 Gm11738 antisense Interval_42580 chr13 15775361 15776004 + 0 NA Intergenic Intergenic -5562 ENSMUSG00000113309.1 ENSMUSG00000113309 ENSMUST00000222341 Gm48408 TEC Interval_121462 chr4 155973137 155973496 + 0 NA Intergenic Intergenic 8755 ENSMUSG00000023571.4 ENSMUSG00000023571 ENSMUST00000127222 C1qtnf12 protein_coding Interval_67781 chr16 57152262 57152466 + 0 NA promoter-TSS (ENSMUSG00000022752.9) protein_coding-promoter-TSS (ENSMUSG00000022752.9) -896 ENSMUSG00000022752.9 ENSMUSG00000022752 ENSMUST00000231901 Tomm70a protein_coding Interval_92862 chr2 67048432 67048705 + 0 NA Intergenic Intergenic 106010 ENSMUSG00000082218.1 ENSMUSG00000082218 ENSMUST00000122405 Gm13602 processed_pseudogene Interval_45449 chr13 55221775 55222244 + 0 NA intron (ENSMUSG00000021488.8, intron 2 of 20) protein_coding-intron (ENSMUSG00000021488.8, intron 2 of 22) 9939 ENSMUSG00000021488.8 ENSMUSG00000021488 ENSMUST00000225405 Nsd1 protein_coding Interval_8551 chr1 141658988 141659341 + 0 NA Intergenic Intergenic 112958 ENSMUSG00000103858.1 ENSMUSG00000103858 ENSMUST00000191749 Gm37604 TEC Interval_105161 chr3 83012149 83013127 + 0 NA intron (ENSMUSG00000033860.13, intron 7 of 8) protein_coding-intron (ENSMUSG00000033860.13, intron 7 of 9) 4777 ENSMUSG00000033860.13 ENSMUSG00000033860 ENSMUST00000194175 Fgg protein_coding Interval_83327 chr18 84240887 84241224 + 0 NA intron (ENSMUSG00000048410.17, intron 8 of 8) protein_coding-intron (ENSMUSG00000048410.17, intron 2 of 2) 38131 ENSMUSG00000118385.1 ENSMUSG00000118385 ENSMUST00000238064 Gm50311 antisense Interval_30277 chr11 92774958 92775283 + 0 NA Intergenic Intergenic -4147 ENSMUSG00000081363.2 ENSMUSG00000081363 ENSMUST00000118237 Gm11500 processed_pseudogene Interval_123735 chr5 35024393 35025698 + 0 NA TTS (ENSMUSG00000029101.16) protein_coding-TTS (ENSMUSG00000029101.16) 3996 ENSMUSG00000093097.1 ENSMUSG00000093097 ENSMUST00000175356 Mir3097 miRNA Interval_30306 chr11 93363625 93363855 + 0 NA intron (ENSMUSG00000056158.14, intron 4 of 9) protein_coding-intron (ENSMUSG00000056158.14, intron 4 of 9) 49584 ENSMUSG00000064743.1 ENSMUSG00000064743 ENSMUST00000082809 Gm24856 snRNA Interval_122217 chr5 20126828 20127923 + 0 NA intron (ENSMUSG00000040003.18, intron 3 of 3) protein_coding-intron (ENSMUSG00000040003.18, intron 3 of 22) -12928 ENSMUSG00000077171.1 ENSMUSG00000077171 ENSMUST00000103983 Gm25761 snoRNA Interval_161490 chr8 120698041 120698479 + 0 NA intron (ENSMUSG00000092329.1, intron 1 of 15) protein_coding-intron (ENSMUSG00000092329.1, intron 1 of 15) 12861 ENSMUSG00000104484.1 ENSMUSG00000104484 ENSMUST00000193913 Gm33142 TEC Interval_37500 chr12 69380324 69380576 + 0 NA Intergenic Intergenic -7982 ENSMUSG00000052673.2 ENSMUSG00000052673 ENSMUST00000053451 Gm9887 antisense Interval_131240 chr5 135950511 135951808 + 0 NA Intergenic Intergenic -16605 ENSMUSG00000051391.9 ENSMUSG00000051391 ENSMUST00000126192 Ywhag protein_coding Interval_93508 chr2 73635373 73635702 + 0 NA intron (ENSMUSG00000056486.18, intron 7 of 9) protein_coding-intron (ENSMUSG00000056486.18, intron 1 of 6) -2974 ENSMUSG00000056486.18 ENSMUSG00000056486 ENSMUST00000230959 Chn1 protein_coding Interval_172728 chrX 47992763 47993236 + 0 NA Intergenic Intergenic 41854 ENSMUSG00000037010.7 ENSMUSG00000037010 ENSMUST00000039026 Apln protein_coding Interval_48747 chr13 102706316 102707532 + 0 NA TTS (ENSMUSG00000021624.9) protein_coding-TTS (ENSMUSG00000021624.9) 13313 ENSMUSG00000021624.9 ENSMUSG00000021624 ENSMUST00000172138 Cd180 protein_coding Interval_92481 chr2 60044474 60045227 + 0 NA intron (ENSMUSG00000026987.16, intron 1 of 34) protein_coding-intron (ENSMUSG00000026987.16, intron 1 of 34) 7709 ENSMUSG00000085975.1 ENSMUSG00000085975 ENSMUST00000153675 Gm13572 lincRNA Interval_131686 chr5 139287355 139287843 + 0 NA intron (ENSMUSG00000056413.16, intron 3 of 9) protein_coding-intron (ENSMUSG00000056413.16, intron 4 of 10) 15551 ENSMUSG00000056413.16 ENSMUSG00000056413 ENSMUST00000156815 Adap1 protein_coding Interval_124098 chr5 38275521 38278494 + 0 NA promoter-TSS (ENSMUSG00000051596.13) protein_coding-promoter-TSS (ENSMUSG00000051596.13) -9016 ENSMUSG00000051596.13 ENSMUSG00000051596 ENSMUST00000187863 Otop1 protein_coding Interval_60476 chr15 74156454 74156944 + 0 NA Intergenic Intergenic -62366 ENSMUSG00000082585.3 ENSMUSG00000082585 ENSMUST00000120421 Gm15387 processed_pseudogene Interval_176 JH792828.1 165453 165850 + 0 NA NA NA NA NA Interval_103863 chr3 53846064 53846769 + 0 NA Intergenic Intergenic 1330 ENSMUSG00000078742.1 ENSMUSG00000078742 ENSMUST00000108014 Gm10985 protein_coding Interval_39567 chr12 90798759 90799014 + 0 NA intron (ENSMUSG00000097157.2, intron 4 of 5) lincRNA-intron (ENSMUSG00000097071.2, intron 4 of 4) -2733 ENSMUSG00000064548.1 ENSMUSG00000064548 ENSMUST00000082614 n-R5s65 rRNA Interval_2020 chr1 35940330 35940574 + 0 NA Intergenic Intergenic -18467 ENSMUSG00000103096.1 ENSMUSG00000103096 ENSMUST00000191763 Gm8022 processed_pseudogene Interval_149728 chr7 100967155 100968118 + 0 NA intron (ENSMUSG00000048779.5, intron 1 of 1) protein_coding-intron (ENSMUSG00000048779.5, intron 1 of 1) 7013 ENSMUSG00000048779.5 ENSMUSG00000048779 ENSMUST00000208653 P2ry6 protein_coding Interval_7467 chr1 131598643 131600567 + 0 NA promoter-TSS (ENSMUSG00000026432.7) protein_coding-promoter-TSS (ENSMUSG00000026432.7) -118 ENSMUSG00000026432.7 ENSMUSG00000026432 ENSMUST00000190410 Avpr1b protein_coding Interval_70028 chr17 4740863 4741216 + 0 NA Intergenic Intergenic 51920 ENSMUSG00000116649.1 ENSMUSG00000116649 ENSMUST00000232212 Gm49780 processed_pseudogene Interval_168701 chr9 86089706 86090052 + 0 NA Intergenic Intergenic 86136 ENSMUSG00000111418.1 ENSMUSG00000111418 ENSMUST00000216119 Gm18016 processed_pseudogene Interval_108435 chr3 127183997 127184504 + 0 NA promoter-TSS (ENSMUSG00000105202.1) TEC-promoter-TSS (ENSMUSG00000105202.1) -277 ENSMUSG00000105202.1 ENSMUSG00000105202 ENSMUST00000197856 C230031I18Rik TEC Interval_121750 chr5 6610800 6611828 + 0 NA Intergenic Intergenic 35494 ENSMUSG00000105487.1 ENSMUSG00000105487 ENSMUST00000197482 Gm43324 processed_pseudogene Interval_28719 chr11 77909573 77909765 + 0 NA Intergenic Intergenic 19619 ENSMUSG00000055045.5 ENSMUSG00000055045 ENSMUST00000132487 Gm11190 lincRNA Interval_166516 chr9 60317887 60318245 + 0 NA intron (ENSMUSG00000032289.15, intron 5 of 16) protein_coding-intron (ENSMUSG00000032289.15, intron 6 of 17) -16076 ENSMUSG00000111296.1 ENSMUSG00000111296 ENSMUST00000214235 2010001M07Rik antisense Interval_158946 chr8 88176039 88176465 + 0 NA Intergenic Intergenic 1692 ENSMUSG00000062704.3 ENSMUSG00000062704 ENSMUST00000185395 9430002A10Rik lincRNA Interval_118705 chr4 133286374 133287253 + 0 NA Intergenic Intergenic -5501 ENSMUSG00000083241.1 ENSMUSG00000083241 ENSMUST00000120792 Gm13259 processed_pseudogene Interval_94911 chr2 101664614 101666764 + 0 NA Intergenic Intergenic -16157 ENSMUSG00000027165.16 ENSMUSG00000027165 ENSMUST00000177171 B230118H07Rik protein_coding Interval_126887 chr5 96729804 96730718 + 0 NA intron (ENSMUSG00000034687.8, intron 50 of 73) protein_coding-intron (ENSMUSG00000034687.8, intron 50 of 73) 9103 ENSMUSG00000106526.1 ENSMUSG00000106526 ENSMUST00000200077 Gm42604 antisense Interval_87899 chr19 56976532 56976734 + 0 NA intron (ENSMUSG00000025083.18, intron 1 of 20) protein_coding-intron (ENSMUSG00000025083.18, intron 2 of 19) -39395 ENSMUSG00000025083.18 ENSMUSG00000025083 ENSMUST00000132851 Afap1l2 protein_coding Interval_90094 chr2 27952793 27953925 + 0 NA intron (ENSMUSG00000026837.16, intron 9 of 65) protein_coding-intron (ENSMUSG00000026837.16, intron 9 of 65) -66307 ENSMUSG00000085766.1 ENSMUSG00000085766 ENSMUST00000154246 2810430I11Rik processed_transcript Interval_126963 chr5 98438230 98439254 + 0 NA intron (ENSMUSG00000057816.7, intron 2 of 6) protein_coding-intron (ENSMUSG00000057816.7, intron 2 of 5) -15005 ENSMUSG00000106273.1 ENSMUSG00000106273 ENSMUST00000198933 Gm43767 processed_pseudogene Interval_34771 chr12 10768423 10768649 + 0 NA Intergenic Intergenic -44030 ENSMUSG00000112515.1 ENSMUSG00000112515 ENSMUST00000219622 Gm4928 processed_pseudogene Interval_117255 chr4 121028570 121030029 + 0 NA Intergenic Intergenic -10449 ENSMUSG00000028626.5 ENSMUSG00000028626 ENSMUST00000140119 Col9a2 protein_coding Interval_120737 chr4 150346910 150347689 + 0 NA intron (ENSMUSG00000039852.17, intron 1 of 22) protein_coding-intron (ENSMUSG00000039852.17, intron 1 of 22) 26106 ENSMUSG00000089292.1 ENSMUSG00000089292 ENSMUST00000158667 Gm23209 snRNA Interval_17781 chr10 80045457 80046668 + 0 NA Intergenic Intergenic -6361 ENSMUSG00000004667.18 ENSMUSG00000004667 ENSMUST00000152843 Polr2e protein_coding Interval_165047 chr9 44127279 44127911 + 0 NA intron (ENSMUSG00000097617.2, intron 1 of 1) antisense-intron (ENSMUSG00000097617.2, intron 1 of 1) 6890 ENSMUSG00000097617.2 ENSMUSG00000097617 ENSMUST00000180670 Gm10687 antisense Interval_20887 chr10 121745433 121745783 + 0 NA exon (ENSMUSG00000053684.8, exon 2 of 3) protein_coding-exon (ENSMUSG00000053684.8, exon 2 of 3) -5272 ENSMUSG00000053684.8 ENSMUSG00000053684 ENSMUST00000138630 BC048403 protein_coding Interval_60862 chr15 77213877 77215908 + 0 NA intron (ENSMUSG00000033565.18, intron 1 of 3) protein_coding-intron (ENSMUSG00000033565.18, intron 2 of 12) 27659 ENSMUSG00000089242.1 ENSMUSG00000089242 ENSMUST00000158617 Gm24056 snRNA Interval_106766 chr3 100558217 100558456 + 0 NA Intergenic Intergenic 29191 ENSMUSG00000105824.1 ENSMUSG00000105824 ENSMUST00000197836 Gm43466 sense_intronic Interval_101394 chr2 181007266 181007503 + 0 NA intron (ENSMUSG00000016356.18, intron 22 of 35) protein_coding-intron (ENSMUSG00000016356.18, intron 23 of 36) 20849 ENSMUSG00000016356.18 ENSMUSG00000016356 ENSMUST00000155425 Col20a1 protein_coding Interval_154143 chr8 13030043 13030444 + 0 NA intron (ENSMUSG00000031443.7, intron 2 of 7) protein_coding-intron (ENSMUSG00000031443.7, intron 2 of 7) 4209 ENSMUSG00000031443.7 ENSMUSG00000031443 ENSMUST00000033820 F7 protein_coding Interval_94593 chr2 92491143 92491393 + 0 NA intron (ENSMUSG00000085261.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000085261.1, intron 1 of 1) 7342 ENSMUSG00000085261.1 ENSMUSG00000085261 ENSMUST00000141341 Gm13814 lincRNA Interval_1699 chr1 31416155 31416827 + 0 NA Intergenic Intergenic 129546 ENSMUSG00000094215.2 ENSMUSG00000094215 ENSMUST00000178167 Gm6489 processed_pseudogene Interval_90535 chr2 31013069 31013855 + 0 NA intron (ENSMUSG00000026854.16, intron 14 of 23) protein_coding-intron (ENSMUSG00000026854.16, intron 15 of 24) 31128 ENSMUSG00000026854.16 ENSMUSG00000026854 ENSMUST00000127776 Usp20 protein_coding Interval_87865 chr19 56669025 56669993 + 0 NA intron (ENSMUSG00000117859.1, intron 1 of 1) processed_transcript-intron (ENSMUSG00000117859.1, intron 1 of 1) -3110 ENSMUSG00000117859.1 ENSMUSG00000117859 ENSMUST00000237417 Gm32492 processed_transcript Interval_116610 chr4 116041987 116043233 + 0 NA intron (ENSMUSG00000028706.14, intron 1 of 4) protein_coding-intron (ENSMUSG00000028706.14, intron 1 of 4) 10770 ENSMUSG00000028706.14 ENSMUSG00000028706 ENSMUST00000151720 Nsun4 protein_coding Interval_111363 chr4 19702834 19703704 + 0 NA intron (ENSMUSG00000041058.15, intron 1 of 24) protein_coding-intron (ENSMUSG00000041058.15, intron 1 of 24) 5724 ENSMUSG00000041058.15 ENSMUSG00000041058 ENSMUST00000035982 Wwp1 protein_coding Interval_6093 chr1 96746797 96747006 + 0 NA Intergenic Intergenic -15130 ENSMUSG00000077255.1 ENSMUSG00000077255 ENSMUST00000104067 Gm26078 snoRNA Interval_91890 chr2 51047732 51050363 + 0 NA Intergenic Intergenic 100063 ENSMUSG00000017144.8 ENSMUSG00000017144 ENSMUST00000140864 Rnd3 protein_coding Interval_22351 chr11 9019425 9019655 + 0 NA intron (ENSMUSG00000040985.13, intron 7 of 8) protein_coding-intron (ENSMUSG00000040985.13, intron 8 of 9) -8412 ENSMUSG00000020413.11 ENSMUSG00000020413 ENSMUST00000127578 Hus1 protein_coding Interval_27036 chr11 62488835 62489735 + 0 NA intron (ENSMUSG00000086310.1, intron 1 of 1) protein_coding-intron (ENSMUSG00000014245.8, intron 2 of 6) 6488 ENSMUSG00000086310.1 ENSMUSG00000086310 ENSMUST00000153718 Gm12278 antisense Interval_161961 chr8 124079981 124081070 + 0 NA intron (ENSMUSG00000092329.1, intron 1 of 15) protein_coding-intron (ENSMUSG00000092329.1, intron 1 of 15) -32113 ENSMUSG00000110704.1 ENSMUSG00000110704 ENSMUST00000212460 Gm45732 antisense Interval_173913 chrX 110416965 110417944 + 0 NA Intergenic Intergenic 44701 ENSMUSG00000082853.1 ENSMUSG00000082853 ENSMUST00000122296 Gm7134 processed_pseudogene Interval_125054 chr5 64135749 64136868 + 0 NA Intergenic Intergenic -7940 ENSMUSG00000087954.1 ENSMUSG00000087954 ENSMUST00000157329 Gm22559 snoRNA Interval_29996 chr11 88605705 88606545 + 0 NA intron (ENSMUSG00000069769.13, intron 5 of 5) protein_coding-intron (ENSMUSG00000069769.13, intron 5 of 13) -15978 ENSMUSG00000069769.13 ENSMUSG00000069769 ENSMUST00000126293 Msi2 protein_coding Interval_24254 chr11 31812077 31812777 + 0 NA intron (ENSMUSG00000085772.7, intron 1 of 4) lincRNA-intron (ENSMUSG00000085772.7, intron 1 of 3) 12097 ENSMUSG00000085772.7 ENSMUSG00000085772 ENSMUST00000126265 D630024D03Rik lincRNA Interval_34755 chr12 9584551 9585423 + 0 NA Intergenic Intergenic -14402 ENSMUSG00000099360.1 ENSMUSG00000099360 ENSMUST00000188935 1700022H16Rik bidirectional_promoter_lncRNA Interval_145288 chr7 31150575 31152222 + 0 NA promoter-TSS (ENSMUSG00000001248.15) protein_coding-promoter-TSS (ENSMUSG00000001248.15) 1870 ENSMUSG00000097149.1 ENSMUSG00000097149 ENSMUST00000181958 G630030J09Rik antisense Interval_69512 chr16 93973371 93973990 + 0 NA intron (ENSMUSG00000047109.13, intron 1 of 2) protein_coding-intron (ENSMUSG00000047109.13, intron 1 of 2) 8908 ENSMUSG00000116681.1 ENSMUSG00000116681 ENSMUST00000232110 Gm49618 sense_intronic Interval_144076 chr7 19326482 19327745 + 0 NA intron (ENSMUSG00000108854.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000108854.1, intron 1 of 1) -6016 ENSMUSG00000109366.1 ENSMUSG00000109366 ENSMUST00000207382 Gm44698 lincRNA Interval_4767 chr1 78503735 78503990 + 0 NA intron (ENSMUSG00000090486.2, intron 1 of 1) protein_coding-intron (ENSMUSG00000090486.2, intron 1 of 1) -2697 ENSMUSG00000090486.2 ENSMUSG00000090486 ENSMUST00000190853 BC035947 protein_coding Interval_68168 chr16 66390856 66391066 + 0 NA Intergenic Intergenic 136175 ENSMUSG00000095506.1 ENSMUSG00000095506 ENSMUST00000179254 Gm22448 snRNA Interval_2339 chr1 38185599 38186335 + 0 NA intron (ENSMUSG00000037138.18, intron 19 of 22) protein_coding-intron (ENSMUSG00000037138.18, intron 19 of 22) -53733 ENSMUSG00000085391.1 ENSMUSG00000085391 ENSMUST00000133299 Gm16150 antisense Interval_62159 chr15 88385642 88386429 + 0 NA Intergenic Intergenic -70403 ENSMUSG00000115880.1 ENSMUSG00000115880 ENSMUST00000230151 4930445N06Rik lincRNA Interval_59014 chr15 41719062 41720187 + 0 NA intron (ENSMUSG00000022307.16, intron 1 of 6) protein_coding-intron (ENSMUSG00000022307.16, intron 3 of 15) 69287 ENSMUSG00000097232.1 ENSMUSG00000097232 ENSMUST00000180418 Gm26854 antisense Interval_129432 chr5 120139244 120139573 + 0 NA promoter-TSS (ENSMUSG00000097368.2) antisense-promoter-TSS (ENSMUSG00000097368.2) -145 ENSMUSG00000097368.2 ENSMUSG00000097368 ENSMUST00000181905 Gm10390 antisense Interval_88351 chr2 4285960 4286297 + 0 NA intron (ENSMUSG00000026657.17, intron 1 of 1) protein_coding-intron (ENSMUSG00000026657.17, intron 1 of 22) 568 ENSMUSG00000026657.17 ENSMUSG00000026657 ENSMUST00000176864 Frmd4a protein_coding Interval_139977 chr6 113154053 113154387 + 0 NA TTS (ENSMUSG00000034269.12) protein_coding-TTS (ENSMUSG00000034269.12) 39723 ENSMUSG00000042873.11 ENSMUSG00000042873 ENSMUST00000203665 Lhfpl4 protein_coding Interval_93444 chr2 73092044 73092402 + 0 NA TTS (ENSMUSG00000027108.15) protein_coding-TTS (ENSMUSG00000027108.15) -24525 ENSMUSG00000082455.3 ENSMUSG00000082455 ENSMUST00000120830 Gm13665 processed_pseudogene Interval_145410 chr7 34569250 34571443 + 0 NA intron (ENSMUSG00000086631.2, intron 3 of 3) lincRNA-intron (ENSMUSG00000086631.2, intron 3 of 3) 23140 ENSMUSG00000086631.2 ENSMUSG00000086631 ENSMUST00000206001 Gm12784 lincRNA Interval_130409 chr5 127397190 127398840 + 0 NA intron (ENSMUSG00000034324.16, intron 2 of 8) protein_coding-intron (ENSMUSG00000034324.16, intron 2 of 8) 88998 ENSMUSG00000104971.1 ENSMUSG00000104971 ENSMUST00000196548 9430087B13Rik TEC Interval_60305 chr15 72703956 72704231 + 0 NA intron (ENSMUSG00000047921.17, intron 18 of 21) protein_coding-intron (ENSMUSG00000047921.17, intron 18 of 21) 17294 ENSMUSG00000088364.2 ENSMUSG00000088364 ENSMUST00000157739 Gm28020 snRNA Interval_30294 chr11 93115860 93116082 + 0 NA intron (ENSMUSG00000056158.14, intron 1 of 8) protein_coding-intron (ENSMUSG00000056158.14, intron 2 of 9) 17943 ENSMUSG00000056158.14 ENSMUSG00000056158 ENSMUST00000107863 Car10 protein_coding Interval_107000 chr3 102726864 102727401 + 0 NA intron (ENSMUSG00000086745.1, intron 1 of 3) antisense-intron (ENSMUSG00000086745.1, intron 1 of 3) 8285 ENSMUSG00000086745.1 ENSMUSG00000086745 ENSMUST00000146624 Tspan2os antisense Interval_4318 chr1 72710520 72712290 + 0 NA promoter-TSS (ENSMUSG00000046330.10) protein_coding-promoter-TSS (ENSMUSG00000046330.10) 91 ENSMUSG00000046330.10 ENSMUSG00000046330 ENSMUST00000211963 Rpl37a protein_coding Interval_30610 chr11 95445428 95445769 + 0 NA intron (ENSMUSG00000057522.15, intron 2 of 4) protein_coding-intron (ENSMUSG00000057522.15, intron 1 of 9) 17123 ENSMUSG00000083208.1 ENSMUSG00000083208 ENSMUST00000120533 Gm11522 processed_pseudogene Interval_91732 chr2 48900006 48900333 + 0 NA TTS (ENSMUSG00000052155.5) protein_coding-TTS (ENSMUSG00000052155.5) 9780 ENSMUSG00000052155.5 ENSMUSG00000052155 ENSMUST00000156681 Acvr2a protein_coding Interval_77892 chr18 5073175 5074048 + 0 NA intron (ENSMUSG00000024236.18, intron 16 of 37) protein_coding-intron (ENSMUSG00000024236.18, intron 13 of 34) 38445 ENSMUSG00000024236.18 ENSMUSG00000024236 ENSMUST00000129543 Svil protein_coding Interval_99736 chr2 164569975 164570358 + 0 NA intron (ENSMUSG00000074596.3, intron 1 of 1) protein_coding-intron (ENSMUSG00000074596.3, intron 1 of 1) 3293 ENSMUSG00000074596.3 ENSMUSG00000074596 ENSMUST00000099097 Spint3 protein_coding Interval_27742 chr11 69746063 69746513 + 0 NA exon (ENSMUSG00000005198.15, exon 6 of 29) protein_coding-exon (ENSMUSG00000005198.15, exon 6 of 29) -8940 ENSMUSG00000005198.15 ENSMUSG00000005198 ENSMUST00000151586 Polr2a protein_coding Interval_92945 chr2 68888744 68889037 + 0 NA intron (ENSMUSG00000027035.10, intron 1 of 10) protein_coding-intron (ENSMUSG00000027035.10, intron 1 of 9) -2476 ENSMUSG00000103233.1 ENSMUSG00000103233 ENSMUST00000192720 Gm37159 TEC Interval_139324 chr6 98876547 98876961 + 0 NA Intergenic Intergenic -15939 ENSMUSG00000107514.1 ENSMUSG00000107514 ENSMUST00000203192 Gm32381 processed_pseudogene Interval_101298 chr2 180234718 180238674 + 0 NA Intergenic Intergenic -20683 ENSMUSG00000039001.12 ENSMUSG00000039001 ENSMUST00000145043 Rps21 protein_coding Interval_45309 chr13 54227692 54228364 + 0 NA intron (ENSMUSG00000034987.4, intron 2 of 2) protein_coding-intron (ENSMUSG00000034987.4, intron 1 of 1) -5005 ENSMUSG00000090016.1 ENSMUSG00000090016 ENSMUST00000160797 Gm16578 antisense Interval_6883 chr1 120354391 120354886 + 0 NA Intergenic Intergenic 14056 ENSMUSG00000036907.9 ENSMUSG00000036907 ENSMUST00000037286 C1ql2 protein_coding Interval_10540 chr1 171613940 171614187 + 0 NA Intergenic Intergenic -6703 ENSMUSG00000004707.14 ENSMUSG00000004707 ENSMUST00000146596 Ly9 protein_coding Interval_137946 chr6 83624938 83625400 + 0 NA Intergenic Intergenic -23461 ENSMUSG00000108609.1 ENSMUSG00000108609 ENSMUST00000206919 Gm7424 processed_pseudogene Interval_129787 chr5 122343442 122344915 + 0 NA intron (ENSMUSG00000038569.13, intron 2 of 3) protein_coding-intron (ENSMUSG00000038569.13, intron 5 of 10) 10042 ENSMUSG00000038569.13 ENSMUSG00000038569 ENSMUST00000200653 Rad9b protein_coding Interval_72729 chr17 31791689 31792103 + 0 NA intron (ENSMUSG00000117355.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000117355.1, intron 1 of 1) 2370 ENSMUSG00000117355.1 ENSMUSG00000117355 ENSMUST00000234824 Gm49999 lincRNA Interval_68952 chr16 89648949 89649177 + 0 NA Intergenic Intergenic -14923 ENSMUSG00000116651.1 ENSMUSG00000116651 ENSMUST00000232201 Gm17844 processed_pseudogene Interval_19327 chr10 96732661 96734534 + 0 NA Intergenic Intergenic 21790 ENSMUSG00000112362.1 ENSMUSG00000112362 ENSMUST00000219424 Gm48507 processed_pseudogene Interval_151334 chr7 121150429 121150893 + 0 NA intron (ENSMUSG00000034990.15, intron 14 of 17) protein_coding-intron (ENSMUSG00000034990.15, intron 24 of 28) 69011 ENSMUSG00000034990.15 ENSMUSG00000034990 ENSMUST00000163275 Otoa protein_coding Interval_118087 chr4 128891527 128892518 + 0 NA intron (ENSMUSG00000041000.8, intron 3 of 5) protein_coding-intron (ENSMUSG00000041000.8, intron 1 of 4) 8442 ENSMUSG00000041000.8 ENSMUSG00000041000 ENSMUST00000035667 Trim62 protein_coding Interval_127552 chr5 105164948 105165144 + 0 NA Intergenic Intergenic -25502 ENSMUSG00000079363.7 ENSMUSG00000079363 ENSMUST00000198278 Gbp4 protein_coding Interval_27655 chr11 69323243 69324431 + 0 NA promoter-TSS (ENSMUSG00000049299.14) protein_coding-promoter-TSS (ENSMUSG00000049299.14) -601 ENSMUSG00000049299.14 ENSMUSG00000049299 ENSMUST00000140555 Trappc1 protein_coding Interval_91456 chr2 38997742 38998540 + 0 NA promoter-TSS (ENSMUSG00000035295.10) protein_coding-promoter-TSS (ENSMUSG00000035295.10) 117 ENSMUSG00000085755.1 ENSMUSG00000085755 ENSMUST00000141133 Gm13496 antisense Interval_132495 chr5 145350191 145350398 + 0 NA intron (ENSMUSG00000070419.11, intron 2 of 11) protein_coding-intron (ENSMUSG00000070419.11, intron 2 of 12) 5015 ENSMUSG00000070419.11 ENSMUSG00000070419 ENSMUST00000079268 Cyp3a57 protein_coding Interval_64030 chr16 5579350 5579757 + 0 NA Intergenic Intergenic -255396 ENSMUSG00000084573.1 ENSMUSG00000084573 ENSMUST00000122624 n-R5s30 rRNA Interval_16033 chr10 60224634 60225199 + 0 NA Intergenic Intergenic -13665 ENSMUSG00000077090.1 ENSMUSG00000077090 ENSMUST00000103902 Gm22117 miRNA Interval_28420 chr11 75761531 75763223 + 0 NA intron (ENSMUSG00000020849.13, intron 4 of 4) protein_coding-intron (ENSMUSG00000020849.13, intron 5 of 5) 10773 ENSMUSG00000020849.13 ENSMUSG00000020849 ENSMUST00000155057 Ywhae protein_coding Interval_46901 chr13 73288721 73289055 + 0 NA Intergenic Intergenic 15658 ENSMUSG00000113485.1 ENSMUSG00000113485 ENSMUST00000223190 Gm48000 TEC Interval_29693 chr11 86123882 86124209 + 0 NA intron (ENSMUSG00000034329.16, intron 14 of 19) protein_coding-intron (ENSMUSG00000034329.16, intron 14 of 19) -61284 ENSMUSG00000080823.1 ENSMUSG00000080823 ENSMUST00000121382 Atp5l-ps2 processed_pseudogene Interval_120250 chr4 144904189 144906633 + 0 NA intron (ENSMUSG00000066026.14, intron 2 of 6) protein_coding-intron (ENSMUSG00000066026.14, intron 1 of 5) 12584 ENSMUSG00000066026.14 ENSMUSG00000066026 ENSMUST00000133265 Dhrs3 protein_coding Interval_89079 chr2 15869510 15869801 + 0 NA exon (ENSMUSG00000075520.5, exon 24 of 39) protein_coding-exon (ENSMUSG00000075520.5, exon 24 of 39) -87270 ENSMUSG00000081245.2 ENSMUSG00000081245 ENSMUST00000120219 Gm6587 processed_pseudogene Interval_158477 chr8 83937016 83937785 + 0 NA promoter-TSS (ENSMUSG00000013033.16) protein_coding-promoter-TSS (ENSMUSG00000013033.16) -3343 ENSMUSG00000074219.3 ENSMUSG00000074219 ENSMUST00000238531 Gm10644 bidirectional_promoter_lncRNA Interval_161720 chr8 122323660 122324824 + 0 NA TTS (ENSMUSG00000049577.15) protein_coding-TTS (ENSMUSG00000049577.15) -10389 ENSMUSG00000049577.15 ENSMUSG00000049577 ENSMUST00000212315 Zfpm1 protein_coding Interval_115653 chr4 101639404 101640525 + 0 NA intron (ENSMUSG00000028528.17, intron 18 of 18) protein_coding-intron (ENSMUSG00000028528.17, intron 18 of 18) -7829 ENSMUSG00000035212.14 ENSMUSG00000035212 ENSMUST00000106927 Leprot protein_coding Interval_6728 chr1 119034044 119034455 + 0 NA intron (ENSMUSG00000048402.14, intron 1 of 6) protein_coding-intron (ENSMUSG00000048402.14, intron 1 of 13) 19090 ENSMUSG00000048402.14 ENSMUSG00000048402 ENSMUST00000159678 Gli2 protein_coding Interval_71311 chr17 22087459 22087701 + 0 NA Intergenic Intergenic -17692 ENSMUSG00000117234.1 ENSMUSG00000117234 ENSMUST00000232840 Gm7818 processed_pseudogene Interval_135737 chr6 46100012 46100465 + 0 NA intron (ENSMUSG00000039419.17, intron 8 of 23) protein_coding-intron (ENSMUSG00000039419.17, intron 8 of 23) 24059 ENSMUSG00000108189.1 ENSMUSG00000108189 ENSMUST00000204727 Gm43887 TEC Interval_45076 chr13 51898701 51898961 + 0 NA Intergenic Intergenic 52087 ENSMUSG00000021453.2 ENSMUSG00000021453 ENSMUST00000132480 Gadd45g protein_coding Interval_136164 chr6 51602066 51602828 + 0 NA Intergenic Intergenic -19185 ENSMUSG00000094528.1 ENSMUSG00000094528 ENSMUST00000175195 Gm22914 miRNA Interval_86106 chr19 36736325 36738448 + 0 NA promoter-TSS (ENSMUSG00000067279.3) protein_coding-promoter-TSS (ENSMUSG00000067279.3) -733 ENSMUSG00000067279.3 ENSMUSG00000067279 ENSMUST00000087321 Ppp1r3c protein_coding Interval_121765 chr5 7565699 7565888 + 0 NA Intergenic Intergenic -165431 ENSMUSG00000098077.1 ENSMUSG00000098077 ENSMUST00000182928 Gm4960 processed_pseudogene Interval_139744 chr6 108307845 108308516 + 0 NA intron (ENSMUSG00000030102.11, intron 1 of 22) protein_coding-intron (ENSMUSG00000030102.11, intron 4 of 61) -79254 ENSMUSG00000030102.11 ENSMUSG00000030102 ENSMUST00000205005 Itpr1 protein_coding Interval_152602 chr7 135051059 135051549 + 0 NA intron (ENSMUSG00000058325.6, intron 29 of 51) protein_coding-intron (ENSMUSG00000058325.6, intron 29 of 51) 80342 ENSMUSG00000077150.1 ENSMUSG00000077150 ENSMUST00000103962 Gm24581 snoRNA Interval_95155 chr2 104394702 104395677 + 0 NA intron (ENSMUSG00000068373.15, intron 1 of 20) protein_coding-intron (ENSMUSG00000068373.15, intron 1 of 20) 15824 ENSMUSG00000068373.15 ENSMUSG00000068373 ENSMUST00000149165 D430041D05Rik protein_coding Interval_167389 chr9 68426232 68426695 + 0 NA Intergenic Intergenic -4559 ENSMUSG00000111562.1 ENSMUSG00000111562 ENSMUST00000216339 Gm19987 processed_pseudogene Interval_149759 chr7 101310345 101311057 + 0 NA Intergenic Intergenic -8652 ENSMUSG00000047767.17 ENSMUSG00000047767 ENSMUST00000209093 Atg16l2 protein_coding Interval_31315 chr11 99643367 99643990 + 0 NA exon (ENSMUSG00000045109.6, exon 1 of 1) protein_coding-exon (ENSMUSG00000045109.6, exon 1 of 1) 411 ENSMUSG00000045109.6 ENSMUSG00000045109 ENSMUST00000055121 Krtap4-7 protein_coding Interval_39400 chr12 87176610 87177717 + 0 NA intron (ENSMUSG00000034111.6, intron 2 of 5) protein_coding-intron (ENSMUSG00000034111.6, intron 2 of 5) -21677 ENSMUSG00000113918.1 ENSMUSG00000113918 ENSMUST00000221468 Gm6566 antisense Interval_88951 chr2 13413450 13414175 + 0 NA intron (ENSMUSG00000026726.10, intron 27 of 66) protein_coding-intron (ENSMUSG00000026726.10, intron 27 of 66) 41815 ENSMUSG00000026726.10 ENSMUSG00000026726 ENSMUST00000148506 Cubn protein_coding Interval_102938 chr3 32978171 32978398 + 0 NA intron (ENSMUSG00000104283.1, intron 1 of 1) protein_coding-intron (ENSMUSG00000027674.16, intron 8 of 14) 3608 ENSMUSG00000104283.1 ENSMUSG00000104283 ENSMUST00000195007 Gm37459 antisense Interval_20618 chr10 119610066 119611018 + 0 NA intron (ENSMUSG00000112555.1, intron 1 of 1) protein_coding-intron (ENSMUSG00000034813.18, intron 1 of 22) 7178 ENSMUSG00000112555.1 ENSMUSG00000112555 ENSMUST00000218599 Gm47027 antisense Interval_7130 chr1 126880987 126881241 + 0 NA Intergenic Intergenic -4499 ENSMUSG00000101600.1 ENSMUSG00000101600 ENSMUST00000188266 4930599A14Rik lincRNA Interval_31128 chr11 98327044 98329181 + 0 NA exon (ENSMUSG00000038255.6, exon 2 of 2) protein_coding-exon (ENSMUSG00000038255.6, exon 2 of 2) 1536 ENSMUSG00000038255.6 ENSMUSG00000038255 ENSMUST00000041685 Neurod2 protein_coding Interval_59434 chr15 53128656 53129589 + 0 NA intron (ENSMUSG00000061731.9, intron 1 of 10) protein_coding-intron (ENSMUSG00000061731.9, intron 1 of 10) -21254 ENSMUSG00000061731.9 ENSMUSG00000061731 ENSMUST00000140798 Ext1 protein_coding Interval_63370 chr15 100656621 100657149 + 0 NA intron (ENSMUSG00000098112.8, intron 3 of 9) protein_coding-intron (ENSMUSG00000098112.8, intron 2 of 3) -7656 ENSMUSG00000098527.1 ENSMUSG00000098527 ENSMUST00000183874 Mir6961 miRNA Interval_125520 chr5 67939415 67939685 + 0 NA intron (ENSMUSG00000106880.1, intron 1 of 3) protein_coding-intron (ENSMUSG00000095346.1, intron 1 of 1) -2119 ENSMUSG00000094719.4 ENSMUSG00000094719 ENSMUST00000201798 Gm5108 protein_coding Interval_117828 chr4 126459781 126460503 + 0 NA promoter-TSS (ENSMUSG00000041530.17) protein_coding-promoter-TSS (ENSMUSG00000041530.17) 8279 ENSMUSG00000041530.17 ENSMUSG00000041530 ENSMUST00000149425 Ago1 protein_coding Interval_98958 chr2 156328278 156328527 + 0 NA exon (ENSMUSG00000038085.13, exon 3 of 13) protein_coding-exon (ENSMUSG00000038085.13, exon 3 of 13) -5459 ENSMUSG00000038085.13 ENSMUSG00000038085 ENSMUST00000154227 Cnbd2 protein_coding Interval_147575 chr7 68376450 68376662 + 0 NA Intergenic Intergenic -8223 ENSMUSG00000109458.1 ENSMUSG00000109458 ENSMUST00000207674 Gm44889 lincRNA Interval_85491 chr19 27447519 27448245 + 0 NA Intergenic Intergenic -27783 ENSMUSG00000041360.8 ENSMUSG00000041360 ENSMUST00000236702 Pum3 protein_coding Interval_165308 chr9 46177891 46178784 + 0 NA intron (ENSMUSG00000034135.15, intron 2 of 20) protein_coding-intron (ENSMUSG00000034135.15, intron 5 of 22) -50384 ENSMUSG00000032083.8 ENSMUSG00000032083 ENSMUST00000132155 Apoa1 protein_coding Interval_154129 chr8 12930252 12930697 + 0 NA intron (ENSMUSG00000031442.21, intron 1 of 27) protein_coding-intron (ENSMUSG00000031442.21, intron 2 of 29) -1188 ENSMUSG00000031442.21 ENSMUSG00000031442 ENSMUST00000134989 Mcf2l protein_coding Interval_161099 chr8 117458278 117459178 + 0 NA promoter-TSS (ENSMUSG00000098483.1) miRNA-promoter-TSS (ENSMUSG00000098483.1) -537 ENSMUSG00000098483.1 ENSMUSG00000098483 ENSMUST00000183794 Mir7078 miRNA Interval_149972 chr7 103942560 103943375 + 0 NA Intergenic Intergenic -1470 ENSMUSG00000073937.2 ENSMUSG00000073937 ENSMUST00000098188 Olfr633 protein_coding Interval_5612 chr1 90228548 90228808 + 0 NA promoter-TSS (ENSMUSG00000104087.1) TEC-promoter-TSS (ENSMUSG00000104087.1) -152 ENSMUSG00000104087.1 ENSMUSG00000104087 ENSMUST00000195172 Gm38277 TEC Interval_107940 chr3 117044334 117044797 + 0 NA Intergenic Intergenic 33200 ENSMUSG00000028009.7 ENSMUSG00000028009 ENSMUST00000029642 1700061I17Rik lincRNA Interval_38597 chr12 80360047 80360243 + 0 NA intron (ENSMUSG00000049106.7, intron 7 of 8) protein_coding-intron (ENSMUSG00000049106.7, intron 7 of 8) 16547 ENSMUSG00000049106.7 ENSMUSG00000049106 ENSMUST00000218498 Dcaf5 protein_coding Interval_76311 chr17 78961887 78962809 + 0 NA intron (ENSMUSG00000024070.15, intron 12 of 18) protein_coding-intron (ENSMUSG00000024070.15, intron 11 of 17) 17321 ENSMUSG00000024082.5 ENSMUSG00000024082 ENSMUST00000232821 Ndufaf7 protein_coding Interval_12861 chr10 6878370 6879196 + 0 NA intron (ENSMUSG00000000766.18, intron 4 of 5) protein_coding-intron (ENSMUSG00000000766.18, intron 3 of 4) 89974 ENSMUSG00000000766.18 ENSMUSG00000000766 ENSMUST00000148625 Oprm1 protein_coding Interval_1764 chr1 33636010 33638337 + 0 NA intron (ENSMUSG00000026134.11, intron 5 of 13) protein_coding-intron (ENSMUSG00000026134.11, intron 5 of 13) -15031 ENSMUSG00000026134.11 ENSMUSG00000026134 ENSMUST00000187353 Prim2 protein_coding Interval_172481 chrX 20961465 20962601 + 0 NA promoter-TSS (ENSMUSG00000001134.9) protein_coding-promoter-TSS (ENSMUSG00000001134.9) -81 ENSMUSG00000086877.7 ENSMUSG00000086877 ENSMUST00000136447 A230072C01Rik processed_transcript Interval_68139 chr16 65629092 65629318 + 0 NA Intergenic Intergenic -15786 ENSMUSG00000116578.1 ENSMUSG00000116578 ENSMUST00000232570 Gm49633 processed_pseudogene Interval_79126 chr18 24779690 24780379 + 0 NA intron (ENSMUSG00000034295.10, intron 3 of 24) protein_coding-intron (ENSMUSG00000034295.10, intron 3 of 26) 18871 ENSMUSG00000088920.1 ENSMUSG00000088920 ENSMUST00000158295 Gm24294 misc_RNA Interval_95410 chr2 108785324 108785970 + 0 NA Intergenic Intergenic -51445 ENSMUSG00000083697.1 ENSMUSG00000083697 ENSMUST00000118202 Gm13914 processed_pseudogene Interval_27191 chr11 63951830 63953463 + 0 NA Intergenic Intergenic -11580 ENSMUSG00000086359.1 ENSMUSG00000086359 ENSMUST00000146915 9630013K17Rik antisense Interval_115363 chr4 98113229 98113492 + 0 NA exon (ENSMUSG00000028565.18, exon 10 of 10) protein_coding-exon (ENSMUSG00000028565.18, exon 10 of 10) 36901 ENSMUSG00000081096.2 ENSMUSG00000081096 ENSMUST00000120186 Gm12691 transcribed_processed_pseudogene Interval_23269 chr11 21063294 21063488 + 0 NA Intergenic Intergenic -27900 ENSMUSG00000020134.13 ENSMUSG00000020134 ENSMUST00000101477 Peli1 protein_coding Interval_138682 chr6 91136723 91136925 + 0 NA Intergenic Intergenic -15889 ENSMUSG00000107882.1 ENSMUSG00000107882 ENSMUST00000204082 Gm44278 lincRNA Interval_135909 chr6 48607288 48608020 + 0 NA intron (ENSMUSG00000007216.6, intron 1 of 2) protein_coding-intron (ENSMUSG00000007216.6, intron 1 of 2) 5591 ENSMUSG00000007216.6 ENSMUSG00000007216 ENSMUST00000061720 Zfp775 protein_coding Interval_168094 chr9 76312320 76314593 + 0 NA intron (ENSMUSG00000032360.16, intron 1 of 6) protein_coding-intron (ENSMUSG00000032360.16, intron 1 of 7) -6121 ENSMUSG00000098894.1 ENSMUSG00000098894 ENSMUST00000183362 Gm27234 antisense Interval_11821 chr1 185822429 185822982 + 0 NA Intergenic Intergenic 56180 ENSMUSG00000102546.1 ENSMUSG00000102546 ENSMUST00000194568 Gm9722 processed_pseudogene Interval_87677 chr19 54258023 54258347 + 0 NA Intergenic Intergenic 59794 ENSMUSG00000118324.1 ENSMUSG00000118324 ENSMUST00000237525 Gm50187 TEC Interval_123834 chr5 35822840 35824176 + 0 NA intron (ENSMUSG00000029095.17, intron 1 of 3) protein_coding-intron (ENSMUSG00000029095.17, intron 6 of 19) -34386 ENSMUSG00000029095.17 ENSMUSG00000029095 ENSMUST00000153529 Ablim2 protein_coding Interval_83734 chr19 4266192 4266402 + 0 NA promoter-TSS (ENSMUSG00000034616.17) protein_coding-promoter-TSS (ENSMUSG00000034616.17) 1944 ENSMUSG00000034616.17 ENSMUSG00000034616 ENSMUST00000237790 Ssh3 protein_coding Interval_170007 chr9 103573767 103574869 + 0 NA intron (ENSMUSG00000042757.16, intron 3 of 3) protein_coding-intron (ENSMUSG00000042757.16, intron 2 of 4) 17228 ENSMUSG00000099616.1 ENSMUSG00000099616 ENSMUST00000190332 4932413F04Rik antisense Interval_39388 chr12 87067665 87068429 + 0 NA TTS (ENSMUSG00000080868.1) processed_pseudogene-TTS (ENSMUSG00000080868.1) 570 ENSMUSG00000080868.1 ENSMUSG00000080868 ENSMUST00000119807 Gm15745 processed_pseudogene Interval_33600 chr11 117436128 117436315 + 0 NA intron (ENSMUSG00000085336.1, intron 1 of 4) processed_transcript-intron (ENSMUSG00000085336.1, intron 1 of 4) 10043 ENSMUSG00000085336.1 ENSMUSG00000085336 ENSMUST00000151381 Gm11732 processed_transcript Interval_36712 chr12 52374067 52374281 + 0 NA Intergenic Intergenic 73951 ENSMUSG00000112139.1 ENSMUSG00000112139 ENSMUST00000218097 Gm47431 lincRNA Interval_81206 chr18 56458718 56459361 + 0 NA intron (ENSMUSG00000001700.10, intron 2 of 14) protein_coding-intron (ENSMUSG00000001700.10, intron 1 of 13) -10228 ENSMUSG00000001700.10 ENSMUSG00000001700 ENSMUST00000237716 Gramd3 protein_coding Interval_143730 chr7 15957334 15957827 + 0 NA TTS (ENSMUSG00000074364.6) protein_coding-TTS (ENSMUSG00000074364.6) 9895 ENSMUSG00000074364.6 ENSMUSG00000074364 ENSMUST00000144956 Ehd2 protein_coding Interval_51902 chr14 33655593 33655813 + 0 NA Intergenic Intergenic 11208 ENSMUSG00000064446.1 ENSMUSG00000064446 ENSMUST00000082512 Gm26228 snRNA Interval_9543 chr1 159164676 159164972 + 0 NA intron (ENSMUSG00000104014.1, intron 3 of 4) lincRNA-intron (ENSMUSG00000104014.1, intron 3 of 4) 3818 ENSMUSG00000061992.2 ENSMUSG00000061992 ENSMUST00000077309 Gm4953 processed_pseudogene Interval_124499 chr5 49370846 49371104 + 0 NA intron (ENSMUSG00000029088.16, intron 1 of 8) protein_coding-intron (ENSMUSG00000029088.16, intron 1 of 8) 40857 ENSMUSG00000105700.1 ENSMUSG00000105700 ENSMUST00000199945 Gm42772 TEC Interval_154224 chr8 13571500 13572385 + 0 NA intron (ENSMUSG00000031453.16, intron 8 of 9) protein_coding-intron (ENSMUSG00000031453.16, intron 22 of 23) -9481 ENSMUSG00000031452.15 ENSMUSG00000031452 ENSMUST00000132787 1700029H14Rik protein_coding Interval_45531 chr13 55684869 55685138 + 0 NA Intergenic Intergenic -8121 ENSMUSG00000045767.9 ENSMUSG00000045767 ENSMUST00000057844 B230219D22Rik protein_coding Interval_86616 chr19 42070244 42071458 + 0 NA TTS (ENSMUSG00000025176.14) protein_coding-TTS (ENSMUSG00000025176.14) 8282 ENSMUSG00000049670.9 ENSMUSG00000049670 ENSMUST00000051772 Morn4 protein_coding Interval_58456 chr15 34793397 34793689 + 0 NA Intergenic Intergenic 32886 ENSMUSG00000115360.1 ENSMUSG00000115360 ENSMUST00000226322 Gm48932 TEC Interval_39192 chr12 85705008 85706167 + 0 NA intron (ENSMUSG00000034266.6, intron 2 of 2) protein_coding-intron (ENSMUSG00000034266.6, intron 2 of 2) 12976 ENSMUSG00000106297.1 ENSMUSG00000106297 ENSMUST00000199436 Gm47285 miRNA Interval_51526 chr14 29794830 29796009 + 0 NA intron (ENSMUSG00000114774.1, intron 1 of 3) lincRNA-intron (ENSMUSG00000114774.1, intron 1 of 3) 56989 ENSMUSG00000114774.1 ENSMUSG00000114774 ENSMUST00000224736 Gm35281 lincRNA Interval_156038 chr8 43124927 43125669 + 0 NA Intergenic Intergenic 11295 ENSMUSG00000031651.5 ENSMUSG00000031651 ENSMUST00000211541 Triml1 protein_coding Interval_105221 chr3 83969192 83970461 + 0 NA intron (ENSMUSG00000033767.14, intron 3 of 33) protein_coding-intron (ENSMUSG00000033767.14, intron 3 of 33) -62247 ENSMUSG00000033767.14 ENSMUSG00000033767 ENSMUST00000192811 Tmem131l protein_coding Interval_83074 chr18 81069127 81070378 + 0 NA Intergenic Intergenic -13312 ENSMUSG00000118262.1 ENSMUSG00000118262 ENSMUST00000237649 Gm50423 lincRNA Interval_48379 chr13 98622465 98625231 + 0 NA Intergenic Intergenic -6186 ENSMUSG00000114521.1 ENSMUSG00000114521 ENSMUST00000224567 Gm48050 processed_transcript Interval_120282 chr4 145167144 145167479 + 0 NA intron (ENSMUSG00000020220.16, intron 13 of 69) protein_coding-intron (ENSMUSG00000020220.16, intron 12 of 67) -11825 ENSMUSG00000020220.16 ENSMUSG00000020220 ENSMUST00000132700 Vps13d protein_coding Interval_35243 chr12 18765790 18766679 + 0 NA Intergenic Intergenic -7260 ENSMUSG00000113646.1 ENSMUSG00000113646 ENSMUST00000220463 Gm46313 unprocessed_pseudogene Interval_108146 chr3 121884869 121886655 + 0 NA Intergenic Intergenic 22920 ENSMUSG00000104595.1 ENSMUSG00000104595 ENSMUST00000198469 Gm42593 processed_pseudogene Interval_168089 chr9 76176423 76177195 + 0 NA intron (ENSMUSG00000059383.14, intron 5 of 7) protein_coding-intron (ENSMUSG00000059383.14, intron 6 of 8) 36848 ENSMUSG00000059383.14 ENSMUSG00000059383 ENSMUST00000074880 Gfral protein_coding Interval_10676 chr1 172619136 172619749 + 0 NA Intergenic Intergenic 13520 ENSMUSG00000026544.6 ENSMUSG00000026544 ENSMUST00000027826 Dusp23 protein_coding Interval_52196 chr14 40166741 40166952 + 0 NA Intergenic Intergenic 48395 ENSMUSG00000077019.1 ENSMUSG00000077019 ENSMUST00000103831 Gm22191 miRNA Interval_133073 chr5 149653389 149654876 + 0 NA Intergenic Intergenic 7091 ENSMUSG00000080002.2 ENSMUSG00000080002 ENSMUST00000116118 Gm5566 processed_pseudogene Interval_5606 chr1 90176515 90176773 + 0 NA Intergenic Intergenic 23016 ENSMUSG00000100850.1 ENSMUSG00000100850 ENSMUST00000190254 4930434B07Rik lincRNA Interval_18327 chr10 84945849 84946130 + 0 NA intron (ENSMUSG00000035620.15, intron 1 of 7) protein_coding-intron (ENSMUSG00000035620.15, intron 2 of 9) 8596 ENSMUSG00000035620.15 ENSMUSG00000035620 ENSMUST00000214820 Ric8b protein_coding Interval_12151 chr1 190160350 190161556 + 0 NA exon (ENSMUSG00000010175.13, exon 2 of 5) protein_coding-exon (ENSMUSG00000010175.13, exon 2 of 5) -7717 ENSMUSG00000099404.1 ENSMUSG00000099404 ENSMUST00000189880 Gm28172 antisense Interval_27021 chr11 62417276 62417699 + 0 NA intron (ENSMUSG00000018501.17, intron 4 of 14) protein_coding-intron (ENSMUSG00000018501.17, intron 5 of 45) -34133 ENSMUSG00000018501.17 ENSMUSG00000018501 ENSMUST00000141447 Ncor1 protein_coding Interval_92197 chr2 55964176 55964415 + 0 NA Intergenic Intergenic 8699 ENSMUSG00000082499.1 ENSMUSG00000082499 ENSMUST00000120242 Gm13615 processed_pseudogene Interval_146773 chr7 50485296 50485545 + 0 NA intron (ENSMUSG00000055409.14, intron 9 of 9) protein_coding-intron (ENSMUSG00000055409.14, intron 13 of 19) 90551 ENSMUSG00000085265.1 ENSMUSG00000085265 ENSMUST00000136672 Nell1os antisense Interval_152440 chr7 133032496 133033047 + 0 NA intron (ENSMUSG00000030970.16, intron 2 of 4) protein_coding-intron (ENSMUSG00000030970.16, intron 2 of 10) -49219 ENSMUSG00000085663.1 ENSMUSG00000085663 ENSMUST00000131085 Gm15718 antisense Interval_80697 chr18 46421940 46422226 + 0 NA intron (ENSMUSG00000118002.1, intron 2 of 2) lincRNA-intron (ENSMUSG00000118002.1, intron 2 of 2) 4960 ENSMUSG00000118002.1 ENSMUSG00000118002 ENSMUST00000237447 Gm4107 lincRNA Interval_84601 chr19 14247122 14247352 + 0 NA Intergenic Intergenic -228866 ENSMUSG00000098074.1 ENSMUSG00000098074 ENSMUST00000182766 Gm26993 processed_pseudogene Interval_108921 chr3 133357214 133359032 + 0 NA intron (ENSMUSG00000028013.16, intron 7 of 8) protein_coding-intron (ENSMUSG00000028013.16, intron 7 of 11) 36655 ENSMUSG00000028013.16 ENSMUSG00000028013 ENSMUST00000196807 Ppa2 protein_coding Interval_46083 chr13 61336333 61336625 + 0 NA promoter-TSS (ENSMUSG00000098860.1) miRNA-promoter-TSS (ENSMUSG00000098860.1) 24 ENSMUSG00000098860.1 ENSMUSG00000098860 ENSMUST00000185094 Gm27704 miRNA Interval_163244 chr9 19497518 19497826 + 0 NA TTS (ENSMUSG00000052625.8) protein_coding-TTS (ENSMUSG00000052625.8) 4377 ENSMUSG00000052625.8 ENSMUSG00000052625 ENSMUST00000064582 Olfr851 protein_coding Interval_172607 chrX 38252173 38252566 + 0 NA promoter-TSS (ENSMUSG00000036502.14) protein_coding-promoter-TSS (ENSMUSG00000036502.14) 70 ENSMUSG00000036502.14 ENSMUSG00000036502 ENSMUST00000139358 Tmem255a protein_coding Interval_44349 chr13 43987885 43988317 + 0 NA Intergenic Intergenic 30421 ENSMUSG00000113252.1 ENSMUSG00000113252 ENSMUST00000223171 Gm33489 lincRNA Interval_17602 chr10 78113186 78113406 + 0 NA Intergenic Intergenic 24801 ENSMUSG00000112662.1 ENSMUSG00000112662 ENSMUST00000218616 Gm47922 lincRNA Interval_146286 chr7 45133600 45134967 + 0 NA promoter-TSS (ENSMUSG00000110206.1) protein_coding-promoter-TSS (ENSMUSG00000110206.1) 1793 ENSMUSG00000110206.1 ENSMUSG00000110206 ENSMUST00000210612 Flt3l protein_coding Interval_96731 chr2 127532372 127532916 + 0 NA intron (ENSMUSG00000027376.15, intron 15 of 23) protein_coding-intron (ENSMUSG00000027376.15, intron 15 of 23) 8770 ENSMUSG00000027376.15 ENSMUSG00000027376 ENSMUST00000155581 Prom2 protein_coding Interval_20788 chr10 120955282 120955667 + 0 NA intron (ENSMUSG00000048661.14, intron 1 of 12) protein_coding-intron (ENSMUSG00000048661.14, intron 1 of 13) 18951 ENSMUSG00000093030.1 ENSMUSG00000093030 ENSMUST00000175289 Gm23632 miRNA Interval_41505 chr12 115432098 115432286 + 0 NA Intergenic Intergenic 14677 ENSMUSG00000096078.2 ENSMUSG00000096078 ENSMUST00000194581 Ighv1-62-2 IG_V_gene Interval_137774 chr6 82301789 82303010 + 0 NA Intergenic Intergenic 20584 ENSMUSG00000107809.1 ENSMUSG00000107809 ENSMUST00000204556 Gm44209 TEC Interval_64989 chr16 17722096 17723237 + 0 NA intron (ENSMUSG00000012114.17, intron 1 of 16) protein_coding-intron (ENSMUSG00000012114.17, intron 1 of 17) 224 ENSMUSG00000012114.17 ENSMUSG00000012114 ENSMUST00000232312 Med15 protein_coding Interval_24044 chr11 29739718 29740736 + 0 NA promoter-TSS (ENSMUSG00000020458.16) protein_coding-promoter-TSS (ENSMUSG00000020458.16) 47279 ENSMUSG00000020458.16 ENSMUSG00000020458 ENSMUST00000126162 Rtn4 protein_coding Interval_115022 chr4 88640998 88643454 + 0 NA Intergenic Intergenic 2233 ENSMUSG00000063376.6 ENSMUSG00000063376 ENSMUST00000105149 Ifna13 protein_coding Interval_117688 chr4 125561930 125562727 + 0 NA intron (ENSMUSG00000001985.9, intron 1 of 15) protein_coding-intron (ENSMUSG00000001985.9, intron 1 of 15) 57579 ENSMUSG00000094403.1 ENSMUSG00000094403 ENSMUST00000102081 Mir692-2 miRNA Interval_3851 chr1 63667249 63669058 + 0 NA intron (ENSMUSG00000069085.5, intron 3 of 4) protein_coding-intron (ENSMUSG00000069085.5, intron 6 of 14) -3315 ENSMUSG00000083066.1 ENSMUSG00000083066 ENSMUST00000120763 Gm12748 processed_pseudogene Interval_81553 chr18 61647268 61649570 + 0 NA promoter-TSS (ENSMUSG00000065592.2) miRNA-promoter-TSS (ENSMUSG00000065592.2) -525 ENSMUSG00000065592.2 ENSMUSG00000065592 ENSMUST00000083658 Mir145a miRNA Interval_96868 chr2 129118107 129119497 + 0 NA TTS (ENSMUSG00000027395.15) protein_coding-TTS (ENSMUSG00000027395.15) -2909 ENSMUSG00000027395.15 ENSMUSG00000027395 ENSMUST00000147727 Polr1b protein_coding Interval_107821 chr3 115815898 115816216 + 0 NA Intergenic Intergenic -71795 ENSMUSG00000033554.17 ENSMUSG00000033554 ENSMUST00000199970 Dph5 protein_coding Interval_113517 chr4 55475126 55476185 + 0 NA Intergenic Intergenic -6496 ENSMUSG00000077635.1 ENSMUSG00000077635 ENSMUST00000104447 Gm22150 snoRNA Interval_103058 chr3 34773797 34775333 + 0 NA intron (ENSMUSG00000106519.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000106519.1, intron 1 of 1) 2490 ENSMUSG00000106519.1 ENSMUSG00000106519 ENSMUST00000197492 Gm38509 lincRNA Interval_132455 chr5 145064863 145065641 + 0 NA intron (ENSMUSG00000038770.17, intron 4 of 7) protein_coding-intron (ENSMUSG00000038770.17, intron 4 of 7) -2265 ENSMUSG00000118480.1 ENSMUSG00000118480 ENSMUST00000238523 Gm50458 unitary_pseudogene Interval_4994 chr1 83844159 83845242 + 0 NA intron (ENSMUSG00000100580.6, intron 7 of 7) lincRNA-intron (ENSMUSG00000100580.6, intron 2 of 4) 48788 ENSMUSG00000094946.1 ENSMUSG00000094946 ENSMUST00000178653 Gm25754 miRNA Interval_123010 chr5 28418274 28420325 + 0 NA TTS (ENSMUSG00000048271.14) protein_coding-TTS (ENSMUSG00000048271.14) 25244 ENSMUSG00000048271.14 ENSMUSG00000048271 ENSMUST00000133313 Rbm33 protein_coding Interval_148191 chr7 79721213 79722164 + 0 NA TTS (ENSMUSG00000030546.14) protein_coding-TTS (ENSMUSG00000030546.14) -6019 ENSMUSG00000050382.14 ENSMUSG00000050382 ENSMUST00000184137 Kif7 protein_coding Interval_166797 chr9 62768521 62769446 + 0 NA intron (ENSMUSG00000032243.8, intron 21 of 27) protein_coding-intron (ENSMUSG00000032243.8, intron 21 of 29) -20921 ENSMUSG00000111537.1 ENSMUSG00000111537 ENSMUST00000214567 Gm7653 processed_pseudogene Interval_92309 chr2 58583227 58583665 + 0 NA promoter-TSS (ENSMUSG00000026839.17) protein_coding-promoter-TSS (ENSMUSG00000026839.17) -49635 ENSMUSG00000026839.17 ENSMUSG00000026839 ENSMUST00000128864 Upp2 protein_coding Interval_46543 chr13 66979356 66980899 + 0 NA intron (ENSMUSG00000021518.4, intron 3 of 3) protein_coding-intron (ENSMUSG00000021518.4, intron 9 of 12) 27466 ENSMUSG00000114362.1 ENSMUSG00000114362 ENSMUST00000224762 4933433G19Rik antisense Interval_91270 chr2 37256941 37258117 + 0 NA Intergenic Intergenic -9422 ENSMUSG00000049094.7 ENSMUSG00000049094 ENSMUST00000143957 Olfr367-ps transcribed_unprocessed_pseudogene Interval_130925 chr5 134085145 134085464 + 0 NA Intergenic Intergenic 6147 ENSMUSG00000106800.1 ENSMUSG00000106800 ENSMUST00000202497 1700030N18Rik TEC Interval_165057 chr9 44196045 44196488 + 0 NA intron (ENSMUSG00000034342.9, intron 2 of 15) protein_coding-intron (ENSMUSG00000034342.9, intron 2 of 14) -15565 ENSMUSG00000110972.1 ENSMUSG00000110972 ENSMUST00000214603 5830462O15Rik TEC Interval_115259 chr4 94950209 94950413 + 0 NA intron (ENSMUSG00000062627.9, intron 4 of 6) protein_coding-intron (ENSMUSG00000062627.9, intron 17 of 19) 14690 ENSMUSG00000083179.3 ENSMUSG00000083179 ENSMUST00000121965 Gm12693 processed_pseudogene Interval_16227 chr10 61544247 61544967 + 0 NA intron (ENSMUSG00000037151.8, intron 3 of 4) protein_coding-intron (ENSMUSG00000037151.8, intron 3 of 4) -26304 ENSMUSG00000112255.1 ENSMUSG00000112255 ENSMUST00000219114 Gm47594 TEC Interval_39296 chr12 86513513 86514664 + 0 NA intron (ENSMUSG00000021255.17, intron 4 of 5) protein_coding-intron (ENSMUSG00000021255.17, intron 5 of 6) 43971 ENSMUSG00000021255.17 ENSMUSG00000021255 ENSMUST00000136464 Esrrb protein_coding Interval_98383 chr2 151990858 151991680 + 0 NA Intergenic Intergenic -8596 ENSMUSG00000027463.14 ENSMUSG00000027463 ENSMUST00000109858 Slc52a3 protein_coding Interval_168356 chr9 79447485 79447765 + 0 NA intron (ENSMUSG00000111765.1, intron 2 of 2) lincRNA-intron (ENSMUSG00000111765.1, intron 2 of 2) -52156 ENSMUSG00000111560.1 ENSMUSG00000111560 ENSMUST00000215133 Gm35262 processed_pseudogene Interval_94990 chr2 102647782 102648147 + 0 NA Intergenic Intergenic 97815 ENSMUSG00000027188.8 ENSMUSG00000027188 ENSMUST00000143071 Pamr1 protein_coding Interval_24428 chr11 33188114 33188599 + 0 NA Intergenic Intergenic 15233 ENSMUSG00000040610.7 ENSMUSG00000040610 ENSMUST00000037746 Tlx3 protein_coding Interval_4282 chr1 72371831 72372764 + 0 NA intron (ENSMUSG00000026187.9, intron 16 of 20) protein_coding-intron (ENSMUSG00000026187.9, intron 16 of 20) 64870 ENSMUSG00000026187.9 ENSMUSG00000026187 ENSMUST00000027379 Xrcc5 protein_coding Interval_28575 chr11 76893743 76894494 + 0 NA Intergenic Intergenic -10357 ENSMUSG00000020839.16 ENSMUSG00000020839 ENSMUST00000136899 Tmigd1 protein_coding Interval_131811 chr5 140035143 140035580 + 0 NA intron (ENSMUSG00000029554.15, intron 6 of 6) protein_coding-intron (ENSMUSG00000029554.15, intron 17 of 17) -3185 ENSMUSG00000105453.1 ENSMUSG00000105453 ENSMUST00000198772 Gm43702 TEC Interval_24368 chr11 32704395 32705490 + 0 NA intron (ENSMUSG00000020271.17, intron 3 of 4) protein_coding-intron (ENSMUSG00000020271.17, intron 2 of 13) 62038 ENSMUSG00000020271.17 ENSMUSG00000020271 ENSMUST00000143290 Fbxw11 protein_coding Interval_74356 chr17 49377806 49378483 + 0 NA Intergenic Intergenic -46648 ENSMUSG00000117198.1 ENSMUSG00000117198 ENSMUST00000233953 Gm18067 processed_pseudogene Interval_161955 chr8 124033456 124034198 + 0 NA intron (ENSMUSG00000031976.14, intron 4 of 9) protein_coding-intron (ENSMUSG00000031976.14, intron 3 of 8) 11186 ENSMUSG00000088414.1 ENSMUSG00000088414 ENSMUST00000157789 Mir1967 miRNA Interval_72874 chr17 32841328 32841546 + 0 NA exon (ENSMUSG00000117347.1, exon 1 of 1) unprocessed_pseudogene-exon (ENSMUSG00000117347.1, exon 1 of 1) 124 ENSMUSG00000117347.1 ENSMUSG00000117347 ENSMUST00000234431 Gm18272 unprocessed_pseudogene Interval_116815 chr4 117413125 117413640 + 0 NA intron (ENSMUSG00000028677.19, intron 2 of 2) protein_coding-intron (ENSMUSG00000028677.19, intron 2 of 14) -32568 ENSMUSG00000086876.1 ENSMUSG00000086876 ENSMUST00000136115 Gm12828 antisense Interval_147060 chr7 60350711 60351411 + 0 NA Intergenic Intergenic 57857 ENSMUSG00000109220.1 ENSMUSG00000109220 ENSMUST00000208957 Gm30196 processed_pseudogene Interval_160653 chr8 111343236 111344050 + 0 NA Intergenic Intergenic -5850 ENSMUSG00000012519.14 ENSMUSG00000012519 ENSMUST00000145862 Mlkl protein_coding Interval_103022 chr3 34560153 34561003 + 0 NA promoter-TSS (ENSMUSG00000105265.4) processed_transcript-promoter-TSS (ENSMUSG00000105265.4) 238 ENSMUSG00000098795.1 ENSMUSG00000098795 ENSMUST00000184662 Gm27403 misc_RNA Interval_129789 chr5 122363855 122364053 + 0 NA TTS (ENSMUSG00000029463.5) protein_coding-TTS (ENSMUSG00000029463.5) 6327 ENSMUSG00000029462.18 ENSMUSG00000029462 ENSMUST00000199086 Vps29 protein_coding Interval_57274 chr15 8294559 8295001 + 0 NA intron (ENSMUSG00000022141.7, intron 44 of 46) protein_coding-intron (ENSMUSG00000022141.7, intron 44 of 46) 71637 ENSMUSG00000039801.7 ENSMUSG00000039801 ENSMUST00000128772 Cplane1 protein_coding Interval_81917 chr18 65832599 65834057 + 0 NA Intergenic Intergenic 2416 ENSMUSG00000117866.1 ENSMUSG00000117866 ENSMUST00000237664 Gm50175 processed_pseudogene Interval_64970 chr16 17606337 17606670 + 0 NA Intergenic Intergenic -12860 ENSMUSG00000005899.14 ENSMUSG00000005899 ENSMUST00000232270 Smpd4 protein_coding Interval_173893 chrX 107676846 107677158 + 0 NA exon (ENSMUSG00000031241.17, exon 2 of 9) protein_coding-exon (ENSMUSG00000031241.17, exon 2 of 9) 9038 ENSMUSG00000031241.17 ENSMUSG00000031241 ENSMUST00000168403 Tbx22 protein_coding Interval_121986 chr5 13021114 13021464 + 0 NA Intergenic Intergenic 22145 ENSMUSG00000096810.1 ENSMUSG00000096810 ENSMUST00000179228 Gm10481 processed_pseudogene Interval_128259 chr5 112109912 112110429 + 0 NA Intergenic Intergenic -46067 ENSMUSG00000104538.1 ENSMUSG00000104538 ENSMUST00000197688 1700016B01Rik lincRNA Interval_56034 chr14 104972411 104972657 + 0 NA TTS (ENSMUSG00000077425.1) snoRNA-TTS (ENSMUSG00000077425.1) 1107 ENSMUSG00000077425.1 ENSMUSG00000077425 ENSMUST00000104237 Gm24280 snoRNA Interval_59437 chr15 53166106 53167109 + 0 NA intron (ENSMUSG00000061731.9, intron 1 of 10) protein_coding-intron (ENSMUSG00000061731.9, intron 1 of 10) -58739 ENSMUSG00000061731.9 ENSMUSG00000061731 ENSMUST00000140798 Ext1 protein_coding Interval_17805 chr10 80185179 80187081 + 0 NA intron (ENSMUSG00000003070.6, intron 1 of 3) protein_coding-intron (ENSMUSG00000003070.6, intron 1 of 3) 6648 ENSMUSG00000003070.6 ENSMUSG00000003070 ENSMUST00000003154 Efna2 protein_coding Interval_173052 chrX 68739832 68740673 + 0 NA Intergenic Intergenic -21629 ENSMUSG00000062170.12 ENSMUSG00000062170 ENSMUST00000071848 Fmr1nb protein_coding Interval_152444 chr7 133053914 133054749 + 0 NA intron (ENSMUSG00000030970.16, intron 2 of 3) protein_coding-intron (ENSMUSG00000030970.16, intron 2 of 10) 65940 ENSMUSG00000110282.1 ENSMUSG00000110282 ENSMUST00000209529 B930086L07Rik TEC Interval_24638 chr11 35498144 35498662 + 0 NA intron (ENSMUSG00000056427.10, intron 2 of 3) protein_coding-intron (ENSMUSG00000056427.10, intron 4 of 35) -118413 ENSMUSG00000065583.1 ENSMUSG00000065583 ENSMUST00000083649 Mir218-2 miRNA Interval_169434 chr9 97263904 97264356 + 0 NA Intergenic Intergenic -25056 ENSMUSG00000104167.1 ENSMUSG00000104167 ENSMUST00000192385 A030012G06Rik TEC Interval_72530 chr17 30525664 30526320 + 0 NA intron (ENSMUSG00000062202.14, intron 1 of 8) protein_coding-intron (ENSMUSG00000062202.14, intron 3 of 11) -1089 ENSMUSG00000062202.14 ENSMUSG00000062202 ENSMUST00000236825 Btbd9 protein_coding Interval_148274 chr7 80225487 80226718 + 0 NA exon (ENSMUSG00000030539.13, exon 15 of 15) protein_coding-exon (ENSMUSG00000030539.13, exon 15 of 15) 6703 ENSMUSG00000030538.15 ENSMUSG00000030538 ENSMUST00000206618 Cib1 protein_coding Interval_2167 chr1 36822082 36823046 + 0 NA intron (ENSMUSG00000026116.11, intron 20 of 41) protein_coding-intron (ENSMUSG00000026116.11, intron 19 of 40) 43580 ENSMUSG00000026117.10 ENSMUSG00000026117 ENSMUST00000190128 Zap70 protein_coding Interval_6568 chr1 117167044 117167320 + 0 NA Intergenic Intergenic 226350 ENSMUSG00000101154.1 ENSMUSG00000101154 ENSMUST00000189740 Gm17777 processed_pseudogene Interval_170276 chr9 106631754 106632678 + 0 NA Intergenic Intergenic -4102 ENSMUSG00000088317.1 ENSMUSG00000088317 ENSMUST00000157692 Gm26185 misc_RNA Interval_90377 chr2 30073078 30074885 + 0 NA Intergenic Intergenic -10672 ENSMUSG00000026785.14 ENSMUSG00000026785 ENSMUST00000156197 Pkn3 protein_coding Interval_26586 chr11 59068145 59069206 + 0 NA intron (ENSMUSG00000061462.18, intron 39 of 114) protein_coding-intron (ENSMUSG00000061462.18, intron 39 of 89) 65765 ENSMUSG00000072902.4 ENSMUSG00000072902 ENSMUST00000101162 Gm10435 antisense Interval_129101 chr5 117399304 117399539 + 0 NA Intergenic Intergenic 10206 ENSMUSG00000086075.1 ENSMUSG00000086075 ENSMUST00000156391 Gm15728 lincRNA Interval_144451 chr7 25231720 25232254 + 0 NA promoter-TSS (ENSMUSG00000057177.12) protein_coding-promoter-TSS (ENSMUSG00000057177.12) -743 ENSMUSG00000057177.12 ENSMUSG00000057177 ENSMUST00000206654 Gsk3a protein_coding Interval_66057 chr16 31303327 31303564 + 0 NA promoter-TSS (ENSMUSG00000022548.14) protein_coding-promoter-TSS (ENSMUSG00000022548.14) 0 ENSMUSG00000022548.14 ENSMUSG00000022548 ENSMUST00000145837 Apod protein_coding Interval_43705 chr13 35449741 35451176 + 0 NA intron (ENSMUSG00000114838.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000114838.1, intron 1 of 1) 55075 ENSMUSG00000114838.1 ENSMUSG00000114838 ENSMUST00000226101 Gm48703 lincRNA Interval_16237 chr10 61618234 61619660 + 0 NA intron (ENSMUSG00000020090.7, intron 2 of 3) protein_coding-intron (ENSMUSG00000020090.7, intron 2 of 3) -7873 ENSMUSG00000101792.1 ENSMUSG00000101792 ENSMUST00000186283 Gm28447 processed_transcript Interval_16699 chr10 67090726 67091031 + 0 NA intron (ENSMUSG00000019873.8, intron 1 of 8) protein_coding-intron (ENSMUSG00000019873.8, intron 1 of 7) -53556 ENSMUSG00000019873.8 ENSMUSG00000019873 ENSMUST00000219431 Reep3 protein_coding Interval_37969 chr12 73493197 73493402 + 0 NA intron (ENSMUSG00000113099.1, intron 3 of 3) lincRNA-intron (ENSMUSG00000113099.1, intron 3 of 3) 15371 ENSMUSG00000113099.1 ENSMUSG00000113099 ENSMUST00000222678 Gm34016 lincRNA Interval_62075 chr15 86235980 86236521 + 0 NA intron (ENSMUSG00000051864.10, intron 1 of 3) protein_coding-intron (ENSMUSG00000051864.10, intron 3 of 12) 745 ENSMUSG00000051864.10 ENSMUSG00000051864 ENSMUST00000229242 Tbc1d22a protein_coding Interval_49183 chr13 109234484 109235005 + 0 NA intron (ENSMUSG00000021699.17, intron 1 of 14) protein_coding-intron (ENSMUSG00000021699.17, intron 1 of 14) -90000 ENSMUSG00000076946.2 ENSMUSG00000076946 ENSMUST00000103758 Mir582 miRNA Interval_49828 chr13 116781098 116782161 + 0 NA Intergenic Intergenic 56549 ENSMUSG00000114290.1 ENSMUSG00000114290 ENSMUST00000224552 4930435F18Rik lincRNA Interval_133932 chr6 15763490 15763976 + 0 NA intron (ENSMUSG00000041390.18, intron 3 of 4) protein_coding-intron (ENSMUSG00000041390.18, intron 3 of 4) 43072 ENSMUSG00000041390.18 ENSMUSG00000041390 ENSMUST00000128849 Mdfic protein_coding Interval_841 chr1 12517367 12517601 + 0 NA Intergenic Intergenic -48093 ENSMUSG00000097628.1 ENSMUSG00000097628 ENSMUST00000181461 Gm2383 processed_pseudogene Interval_6312 chr1 105797694 105798245 + 0 NA intron (ENSMUSG00000026321.7, intron 1 of 3) protein_coding-intron (ENSMUSG00000026321.7, intron 1 of 9) 17219 ENSMUSG00000026321.7 ENSMUSG00000026321 ENSMUST00000187658 Tnfrsf11a protein_coding Interval_160983 chr8 116646641 116647110 + 0 NA intron (ENSMUSG00000031758.10, intron 1 of 6) protein_coding-intron (ENSMUSG00000031758.10, intron 1 of 6) 86116 ENSMUSG00000031758.10 ENSMUSG00000031758 ENSMUST00000109102 Cdyl2 protein_coding Interval_82758 chr18 76846437 76847986 + 0 NA Intergenic Intergenic -9194 ENSMUSG00000091519.1 ENSMUSG00000091519 ENSMUST00000166956 Skor2 protein_coding Interval_27045 chr11 62529526 62529886 + 0 NA intron (ENSMUSG00000018509.8, intron 3 of 3) protein_coding-intron (ENSMUSG00000018509.8, intron 3 of 4) 6965 ENSMUSG00000086636.1 ENSMUSG00000086636 ENSMUST00000143382 Gm12949 antisense Interval_108930 chr3 133460361 133461404 + 0 NA Intergenic Intergenic 19800 ENSMUSG00000040943.12 ENSMUSG00000040943 ENSMUST00000195913 Tet2 protein_coding Interval_74814 chr17 56691821 56692185 + 0 NA intron (ENSMUSG00000002372.9, intron 3 of 14) protein_coding-intron (ENSMUSG00000002372.9, intron 2 of 15) 18619 ENSMUSG00000002372.9 ENSMUSG00000002372 ENSMUST00000232922 Ranbp3 protein_coding Interval_11962 chr1 187735922 187736663 + 0 NA intron (ENSMUSG00000026610.13, intron 1 of 1) protein_coding-intron (ENSMUSG00000026610.13, intron 1 of 7) 23487 ENSMUSG00000118492.1 ENSMUSG00000118492 ENSMUST00000238811 AC121143.1 processed_pseudogene Interval_97420 chr2 135998909 135999676 + 0 NA intron (ENSMUSG00000039943.16, intron 32 of 36) protein_coding-intron (ENSMUSG00000039943.16, intron 31 of 35) 26959 ENSMUSG00000064444.1 ENSMUSG00000064444 ENSMUST00000082510 Gm26227 snRNA Interval_24827 chr11 39980912 39981887 + 0 NA Intergenic Intergenic -26795 ENSMUSG00000085301.1 ENSMUSG00000085301 ENSMUST00000130945 Gm12132 lincRNA Interval_1098 chr1 15652034 15652773 + 0 NA intron (ENSMUSG00000092083.4, intron 2 of 2) protein_coding-intron (ENSMUSG00000092083.4, intron 1 of 1) 33643 ENSMUSG00000088829.1 ENSMUSG00000088829 ENSMUST00000158204 Gm25227 snoRNA Interval_105088 chr3 81086622 81087252 + 0 NA intron (ENSMUSG00000028019.9, intron 1 of 5) protein_coding-intron (ENSMUSG00000028019.9, intron 1 of 5) -46500 ENSMUSG00000085106.1 ENSMUSG00000085106 ENSMUST00000146657 Gm16000 antisense Interval_48053 chr13 95596785 95598999 + 0 NA Intergenic Intergenic -18916 ENSMUSG00000113969.1 ENSMUSG00000113969 ENSMUST00000221593 Gm48731 processed_pseudogene Interval_57085 chr15 5937110 5937643 + 0 NA Intergenic Intergenic -14068 ENSMUSG00000115342.1 ENSMUSG00000115342 ENSMUST00000226154 Gm49095 processed_pseudogene Interval_30790 chr11 96475852 96476124 + 0 NA intron (ENSMUSG00000057058.16, intron 1 of 7) protein_coding-intron (ENSMUSG00000057058.16, intron 1 of 11) -7794 ENSMUSG00000057058.16 ENSMUSG00000057058 ENSMUST00000123814 Skap1 protein_coding Interval_59874 chr15 60474745 60475826 + 0 NA Intergenic Intergenic 7161 ENSMUSG00000115503.1 ENSMUSG00000115503 ENSMUST00000227906 Gm6392 processed_pseudogene Interval_49986 chr13 119341475 119342261 + 0 NA intron (ENSMUSG00000116207.1, intron 14 of 16) protein_coding-intron (ENSMUSG00000025453.18, intron 12 of 14) -62323 ENSMUSG00000114736.1 ENSMUSG00000114736 ENSMUST00000223952 Gm47336 lincRNA Interval_149087 chr7 93020732 93020913 + 0 NA intron (ENSMUSG00000097644.1, intron 1 of 3) sense_overlapping-intron (ENSMUSG00000097644.1, intron 1 of 3) 13840 ENSMUSG00000097644.1 ENSMUSG00000097644 ENSMUST00000181886 Gm26862 sense_overlapping Interval_9297 chr1 156018713 156018881 + 0 NA promoter-TSS (ENSMUSG00000026466.16) protein_coding-promoter-TSS (ENSMUSG00000026466.16) 11210 ENSMUSG00000102964.1 ENSMUSG00000102964 ENSMUST00000193532 9430034N14Rik TEC Interval_128484 chr5 113591715 113592488 + 0 NA Intergenic Intergenic 13313 ENSMUSG00000063430.9 ENSMUSG00000063430 ENSMUST00000198673 Wscd2 protein_coding Interval_16917 chr10 69872736 69873114 + 0 NA TTS (ENSMUSG00000069601.14) protein_coding-TTS (ENSMUSG00000069601.14) -302086 ENSMUSG00000048701.13 ENSMUSG00000048701 ENSMUST00000135607 Ccdc6 protein_coding Interval_95709 chr2 114568912 114569112 + 0 NA intron (ENSMUSG00000057147.13, intron 4 of 6) protein_coding-intron (ENSMUSG00000057147.13, intron 4 of 7) -85413 ENSMUSG00000084785.1 ENSMUSG00000084785 ENSMUST00000153726 Gm13972 processed_transcript Interval_88727 chr2 10033667 10034199 + 0 NA intron (ENSMUSG00000025782.12, intron 2 of 6) protein_coding-intron (ENSMUSG00000025782.12, intron 2 of 6) -13905 ENSMUSG00000103570.1 ENSMUSG00000103570 ENSMUST00000194765 C630004M23Rik TEC Interval_12344 chr1 192311888 192313224 + 0 NA intron (ENSMUSG00000058248.12, intron 6 of 10) protein_coding-intron (ENSMUSG00000058248.12, intron 6 of 10) -122184 ENSMUSG00000058248.12 ENSMUSG00000058248 ENSMUST00000151152 Kcnh1 protein_coding Interval_102142 chr3 18559022 18559651 + 0 NA Intergenic Intergenic -5202 ENSMUSG00000105280.1 ENSMUSG00000105280 ENSMUST00000198338 Pgk1-ps3 processed_pseudogene Interval_131130 chr5 135319604 135320442 + 0 NA intron (ENSMUSG00000040013.11, intron 7 of 7) protein_coding-intron (ENSMUSG00000040013.11, intron 8 of 8) 29991 ENSMUSG00000040013.11 ENSMUSG00000040013 ENSMUST00000201534 Fkbp6 protein_coding Interval_3388 chr1 57839721 57840232 + 0 NA intron (ENSMUSG00000038305.15, intron 3 of 6) protein_coding-intron (ENSMUSG00000038305.15, intron 2 of 11) 65814 ENSMUSG00000038305.15 ENSMUSG00000038305 ENSMUST00000164353 Spats2l protein_coding Interval_19251 chr10 95779631 95780456 + 0 NA intron (ENSMUSG00000101517.6, intron 1 of 3) lincRNA-intron (ENSMUSG00000101517.6, intron 1 of 3) 33966 ENSMUSG00000101517.6 ENSMUSG00000101517 ENSMUST00000185499 4732465J04Rik lincRNA Interval_25150 chr11 44562513 44562731 + 0 NA TTS (ENSMUSG00000019189.13) protein_coding-TTS (ENSMUSG00000019189.13) 5791 ENSMUSG00000019189.13 ENSMUSG00000019189 ENSMUST00000129676 Rnf145 protein_coding Interval_68755 chr16 85552862 85554414 + 0 NA promoter-TSS (ENSMUSG00000041134.15) protein_coding-promoter-TSS (ENSMUSG00000041134.15) 305 ENSMUSG00000089698.1 ENSMUSG00000089698 ENSMUST00000161209 Gm2541 processed_pseudogene Interval_139857 chr6 111610417 111610721 + 0 NA Intergenic Intergenic 7317 ENSMUSG00000089605.1 ENSMUSG00000089605 ENSMUST00000158980 Gm22093 rRNA Interval_170188 chr9 106068554 106069034 + 0 NA intron (ENSMUSG00000032572.9, intron 6 of 37) protein_coding-intron (ENSMUSG00000032572.9, intron 6 of 37) -26680 ENSMUSG00000103434.1 ENSMUSG00000103434 ENSMUST00000192983 Gm36993 TEC Interval_82857 chr18 77524720 77525529 + 0 NA intron (ENSMUSG00000025427.15, intron 1 of 4) protein_coding-intron (ENSMUSG00000025427.15, intron 1 of 7) 11684 ENSMUSG00000117855.1 ENSMUSG00000117855 ENSMUST00000236419 Gm50197 processed_pseudogene Interval_123520 chr5 33134674 33134893 + 0 NA intron (ENSMUSG00000011034.6, intron 5 of 14) protein_coding-intron (ENSMUSG00000011034.6, intron 5 of 14) 7327 ENSMUSG00000081618.2 ENSMUSG00000081618 ENSMUST00000117311 5033423K11Rik transcribed_processed_pseudogene Interval_123128 chr5 29937446 29937730 + 0 NA Intergenic Intergenic 13130 ENSMUSG00000105926.1 ENSMUSG00000105926 ENSMUST00000199654 Gm43386 TEC Interval_89169 chr2 17828175 17828366 + 0 NA Intergenic Intergenic -30286 ENSMUSG00000081851.1 ENSMUSG00000081851 ENSMUST00000120245 Gm13323 processed_pseudogene Interval_106664 chr3 98272755 98274220 + 0 NA Intergenic Intergenic -6948 ENSMUSG00000027875.12 ENSMUSG00000027875 ENSMUST00000090746 Hmgcs2 protein_coding Interval_144549 chr7 25828822 25829330 + 0 NA promoter-TSS (ENSMUSG00000076445.1) miRNA-promoter-TSS (ENSMUSG00000076445.1) -199 ENSMUSG00000090467.3 ENSMUSG00000090467 ENSMUST00000165488 Gm4613 processed_pseudogene Interval_46179 chr13 62253669 62254215 + 0 NA Intergenic Intergenic -18819 ENSMUSG00000113081.1 ENSMUSG00000113081 ENSMUST00000221763 Gm3333 transcribed_processed_pseudogene Interval_3302 chr1 55966072 55966850 + 0 NA intron (ENSMUSG00000099950.1, intron 5 of 5) lincRNA-intron (ENSMUSG00000099950.1, intron 1 of 2) -5705 ENSMUSG00000102491.1 ENSMUSG00000102491 ENSMUST00000195320 Gm36986 TEC Interval_134063 chr6 18497543 18497759 + 0 NA intron (ENSMUSG00000000416.16, intron 2 of 22) protein_coding-intron (ENSMUSG00000000416.16, intron 2 of 22) -48311 ENSMUSG00000093271.1 ENSMUSG00000093271 ENSMUST00000175530 Gm26233 miRNA Interval_113610 chr4 56975268 56975496 + 0 NA intron (ENSMUSG00000045589.7, intron 1 of 3) protein_coding-intron (ENSMUSG00000045589.7, intron 2 of 4) 14754 ENSMUSG00000045589.7 ENSMUSG00000045589 ENSMUST00000128276 Frrs1l protein_coding Interval_147984 chr7 76338220 76339490 + 0 NA intron (ENSMUSG00000025754.11, intron 5 of 22) protein_coding-intron (ENSMUSG00000025754.11, intron 5 of 22) -92917 ENSMUSG00000098009.1 ENSMUSG00000098009 ENSMUST00000182353 Gm5597 processed_pseudogene Interval_12005 chr1 188711925 188712510 + 0 NA intron (ENSMUSG00000026609.15, intron 37 of 70) protein_coding-intron (ENSMUSG00000026609.15, intron 37 of 70) -48259 ENSMUSG00000084550.1 ENSMUSG00000084550 ENSMUST00000122601 Gm25269 snRNA Interval_75178 chr17 64423719 64424421 + 0 NA Intergenic Intergenic -16736 ENSMUSG00000098984.1 ENSMUSG00000098984 ENSMUST00000185032 Mir6420 miRNA Interval_147802 chr7 73643535 73644545 + 0 NA Intergenic Intergenic 2049 ENSMUSG00000065729.1 ENSMUSG00000065729 ENSMUST00000083795 Gm26176 snRNA Interval_105584 chr3 87910094 87911121 + 0 NA intron (ENSMUSG00000004897.16, intron 1 of 3) protein_coding-intron (ENSMUSG00000004897.16, intron 1 of 5) 3555 ENSMUSG00000004897.16 ENSMUSG00000004897 ENSMUST00000160312 Hdgf protein_coding Interval_81120 chr18 54214305 54214769 + 0 NA Intergenic Intergenic -183229 ENSMUSG00000117769.1 ENSMUSG00000117769 ENSMUST00000237377 Gm8594 processed_pseudogene Interval_28426 chr11 75801728 75803021 + 0 NA intron (ENSMUSG00000087059.7, intron 2 of 2) processed_transcript-intron (ENSMUSG00000087059.7, intron 2 of 4) -6325 ENSMUSG00000020848.7 ENSMUSG00000020848 ENSMUST00000021209 Doc2b protein_coding Interval_154450 chr8 17888248 17889448 + 0 NA Intergenic Intergenic -353567 ENSMUSG00000060924.15 ENSMUSG00000060924 ENSMUST00000122983 Csmd1 protein_coding Interval_130385 chr5 127209953 127210634 + 0 NA Intergenic Intergenic -9196 ENSMUSG00000104778.1 ENSMUSG00000104778 ENSMUST00000197873 Gm43476 lincRNA Interval_134560 chr6 29555789 29556050 + 0 NA intron (ENSMUSG00000012535.14, intron 1 of 1) protein_coding-intron (ENSMUSG00000012535.14, intron 18 of 22) -7781 ENSMUSG00000106904.1 ENSMUSG00000106904 ENSMUST00000201829 Gm43029 TEC Interval_91537 chr2 41685981 41686230 + 0 NA intron (ENSMUSG00000049252.17, intron 3 of 62) protein_coding-intron (ENSMUSG00000049252.17, intron 6 of 90) 302724 ENSMUSG00000081999.3 ENSMUSG00000081999 ENSMUST00000120980 Gm13461 processed_pseudogene Interval_127267 chr5 101995216 101996594 + 0 NA intron (ENSMUSG00000043940.15, intron 3 of 15) protein_coding-intron (ENSMUSG00000043940.15, intron 3 of 66) -14347 ENSMUSG00000043940.15 ENSMUSG00000043940 ENSMUST00000172512 Wdfy3 protein_coding Interval_129982 chr5 123499936 123501337 + 0 NA intron (ENSMUSG00000063409.12, intron 6 of 11) protein_coding-intron (ENSMUSG00000063409.12, intron 6 of 11) -7759 ENSMUSG00000086753.1 ENSMUSG00000086753 ENSMUST00000134552 Gm15751 sense_overlapping Interval_145362 chr7 34233471 34234825 + 0 NA promoter-TSS (ENSMUSG00000085105.2) antisense-promoter-TSS (ENSMUSG00000085105.2) -46 ENSMUSG00000086526.2 ENSMUSG00000086526 ENSMUST00000140881 Gm12762 lincRNA Interval_141389 chr6 127895018 127895206 + 0 NA intron (ENSMUSG00000030351.5, intron 1 of 2) protein_coding-intron (ENSMUSG00000030351.5, intron 1 of 7) 7340 ENSMUSG00000030351.5 ENSMUSG00000030351 ENSMUST00000149801 Tspan11 protein_coding Interval_31252 chr11 99131662 99132676 + 0 NA Intergenic Intergenic 22908 ENSMUSG00000037944.8 ENSMUSG00000037944 ENSMUST00000103134 Ccr7 protein_coding Interval_35269 chr12 19287928 19289161 + 0 NA promoter-TSS (ENSMUSG00000113570.1) TEC-promoter-TSS (ENSMUSG00000113570.1) -18 ENSMUSG00000113570.1 ENSMUSG00000113570 ENSMUST00000220644 Gm5953 TEC Interval_144485 chr7 25402165 25403194 + 0 NA intron (ENSMUSG00000060188.6, intron 2 of 3) protein_coding-intron (ENSMUSG00000060188.6, intron 2 of 3) 10207 ENSMUSG00000060188.6 ENSMUSG00000060188 ENSMUST00000074040 Cxcl17 protein_coding Interval_152446 chr7 133062349 133062783 + 0 NA intron (ENSMUSG00000030970.16, intron 2 of 3) protein_coding-intron (ENSMUSG00000030970.16, intron 2 of 10) 57705 ENSMUSG00000110282.1 ENSMUSG00000110282 ENSMUST00000209529 B930086L07Rik TEC Interval_124412 chr5 45662071 45663108 + 0 NA exon (ENSMUSG00000104665.1, exon 1 of 1) TEC-exon (ENSMUSG00000104665.1, exon 1 of 1) 2522 ENSMUSG00000104665.1 ENSMUSG00000104665 ENSMUST00000199829 Gm43366 TEC Interval_17901 chr10 80690815 80692367 + 0 NA intron (ENSMUSG00000003348.10, intron 1 of 3) protein_coding-intron (ENSMUSG00000003348.10, intron 1 of 3) 2145 ENSMUSG00000003348.10 ENSMUSG00000003348 ENSMUST00000218439 Mob3a protein_coding Interval_35977 chr12 33053807 33054229 + 0 NA intron (ENSMUSG00000035860.9, intron 1 of 3) protein_coding-intron (ENSMUSG00000035860.9, intron 8 of 19) 6243 ENSMUSG00000035860.9 ENSMUSG00000035860 ENSMUST00000219065 Cdhr3 protein_coding Interval_56271 chr14 115570966 115571292 + 0 NA intron (ENSMUSG00000022112.14, intron 6 of 7) protein_coding-intron (ENSMUSG00000022112.14, intron 6 of 7) -14607 ENSMUSG00000093589.1 ENSMUSG00000093589 ENSMUST00000176139 Gm18367 processed_pseudogene Interval_15961 chr10 59689804 59690263 + 0 NA Intergenic Intergenic -12585 ENSMUSG00000020111.15 ENSMUSG00000020111 ENSMUST00000166565 Micu1 protein_coding Interval_109367 chr3 140245143 140245369 + 0 NA Intergenic Intergenic 75972 ENSMUSG00000106207.1 ENSMUSG00000106207 ENSMUST00000196798 Gm19184 processed_pseudogene Interval_5772 chr1 91682669 91683274 + 0 NA Intergenic Intergenic 71565 ENSMUSG00000101705.1 ENSMUSG00000101705 ENSMUST00000188800 Gm28380 lincRNA Interval_24274 chr11 32008073 32008742 + 0 NA intron (ENSMUSG00000020297.10, intron 2 of 2) protein_coding-intron (ENSMUSG00000020297.10, intron 2 of 4) 7944 ENSMUSG00000020297.10 ENSMUSG00000020297 ENSMUST00000093219 Nsg2 protein_coding Interval_94306 chr2 87860251 87862099 + 0 NA Intergenic Intergenic 5313 ENSMUSG00000047039.4 ENSMUSG00000047039 ENSMUST00000061081 Olfr1151 protein_coding Interval_54958 chr14 76487392 76489368 + 0 NA promoter-TSS (ENSMUSG00000022010.19) protein_coding-promoter-TSS (ENSMUSG00000022010.19) -38212 ENSMUSG00000115092.1 ENSMUSG00000115092 ENSMUST00000227784 E130202H07Rik lincRNA Interval_54171 chr14 65942978 65943618 + 0 NA intron (ENSMUSG00000034463.4, intron 1 of 5) protein_coding-intron (ENSMUSG00000034463.4, intron 1 of 5) 10637 ENSMUSG00000034463.4 ENSMUSG00000034463 ENSMUST00000042046 Scara3 protein_coding Interval_155208 chr8 27560578 27561584 + 0 NA intron (ENSMUSG00000110333.1, intron 47 of 65) protein_coding-intron (ENSMUSG00000110333.1, intron 48 of 69) -43296 ENSMUSG00000074404.6 ENSMUSG00000074404 ENSMUST00000211230 Gm1698 lincRNA Interval_25112 chr11 44211736 44213193 + 0 NA Intergenic Intergenic 54745 ENSMUSG00000086738.1 ENSMUSG00000086738 ENSMUST00000145584 Gm12154 lincRNA Interval_145514 chr7 35317977 35318821 + 0 NA promoter-TSS (ENSMUSG00000063808.14) protein_coding-promoter-TSS (ENSMUSG00000063808.14) -33080 ENSMUSG00000063808.14 ENSMUSG00000063808 ENSMUST00000153778 Gpatch1 protein_coding Interval_143502 chr7 10850073 10850388 + 0 NA TTS (ENSMUSG00000109683.1) processed_pseudogene-TTS (ENSMUSG00000109683.1) 964 ENSMUSG00000109683.1 ENSMUSG00000109683 ENSMUST00000209730 Gm7836 processed_pseudogene Interval_73148 chr17 35097099 35097668 + 0 NA intron (ENSMUSG00000007036.15, intron 6 of 18) protein_coding-intron (ENSMUSG00000007036.15, intron 7 of 19) 8069 ENSMUSG00000007036.15 ENSMUSG00000007036 ENSMUST00000173247 Abhd16a protein_coding Interval_112265 chr4 39380180 39381841 + 0 NA Intergenic Intergenic 69239 ENSMUSG00000090839.1 ENSMUSG00000090839 ENSMUST00000169881 Gm17094 antisense Interval_5014 chr1 84217750 84218268 + 0 NA TTS (ENSMUSG00000098851.1) miRNA-TTS (ENSMUSG00000098851.1) 952 ENSMUSG00000098851.1 ENSMUSG00000098851 ENSMUST00000183596 Mir6353 miRNA Interval_50469 chr14 13797562 13798929 + 0 NA Intergenic Intergenic -6185 ENSMUSG00000114480.1 ENSMUSG00000114480 ENSMUST00000225631 Gm3637 processed_pseudogene Interval_38811 chr12 82533037 82533657 + 0 NA Intergenic Intergenic -10289 ENSMUSG00000091668.3 ENSMUSG00000091668 ENSMUST00000167222 Gm8358 processed_pseudogene Interval_152609 chr7 135172330 135172584 + 0 NA exon (ENSMUSG00000058325.6, exon 52 of 52) protein_coding-exon (ENSMUSG00000058325.6, exon 52 of 52) 23545 ENSMUSG00000100717.6 ENSMUSG00000100717 ENSMUST00000187267 1700120G07Rik lincRNA Interval_82452 chr18 74168970 74170619 + 0 NA Intergenic Intergenic 37953 ENSMUSG00000036223.16 ENSMUSG00000036223 ENSMUST00000237276 Ska1 protein_coding Interval_149347 chr7 97621506 97621924 + 0 NA intron (ENSMUSG00000035623.14, intron 2 of 14) protein_coding-intron (ENSMUSG00000035623.14, intron 2 of 15) 23397 ENSMUSG00000086433.1 ENSMUSG00000086433 ENSMUST00000126902 Rsf1os1 antisense Interval_59741 chr15 58983025 58984179 + 0 NA promoter-TSS (ENSMUSG00000115062.1) antisense-promoter-TSS (ENSMUSG00000115062.1) -534 ENSMUSG00000115062.1 ENSMUSG00000115062 ENSMUST00000226216 4930544F09Rik antisense Interval_40357 chr12 104262500 104263830 + 0 NA promoter-TSS (ENSMUSG00000079014.4) protein_coding-promoter-TSS (ENSMUSG00000079014.4) 8 ENSMUSG00000079014.4 ENSMUSG00000079014 ENSMUST00000109960 Serpina3i protein_coding Interval_40338 chr12 103977779 103978705 + 0 NA Intergenic Intergenic 11677 ENSMUSG00000063232.16 ENSMUSG00000063232 ENSMUST00000139777 Serpina11 protein_coding Interval_40120 chr12 101735542 101736833 + 0 NA Intergenic Intergenic -17664 ENSMUSG00000021187.14 ENSMUSG00000021187 ENSMUST00000160830 Tc2n protein_coding Interval_167167 chr9 65771137 65771590 + 0 NA intron (ENSMUSG00000040524.9, intron 2 of 9) protein_coding-intron (ENSMUSG00000040524.9, intron 2 of 9) 26549 ENSMUSG00000040524.9 ENSMUSG00000040524 ENSMUST00000160747 Zfp609 protein_coding Interval_37385 chr12 66283615 66284917 + 0 NA exon (ENSMUSG00000060499.7, exon 1 of 1) protein_coding-exon (ENSMUSG00000060499.7, exon 1 of 1) 135 ENSMUSG00000060499.7 ENSMUSG00000060499 ENSMUST00000081908 Rpl10l protein_coding Interval_123077 chr5 29450558 29450906 + 0 NA intron (ENSMUSG00000001569.10, intron 10 of 10) protein_coding-intron (ENSMUSG00000001569.10, intron 10 of 10) 9414 ENSMUSG00000001569.10 ENSMUSG00000001569 ENSMUST00000146347 Nom1 protein_coding Interval_126181 chr5 81595240 81596176 + 0 NA intron (ENSMUSG00000037605.16, intron 9 of 12) protein_coding-intron (ENSMUSG00000037605.16, intron 7 of 24) 59982 ENSMUSG00000107375.1 ENSMUSG00000107375 ENSMUST00000200696 Gm43084 TEC Interval_143112 chr6 149434301 149435072 + 0 NA promoter-TSS (ENSMUSG00000082072.1) processed_pseudogene-promoter-TSS (ENSMUSG00000082072.1) -213 ENSMUSG00000082072.1 ENSMUSG00000082072 ENSMUST00000119145 Gm15785 processed_pseudogene Interval_40924 chr12 109929130 109929975 + 0 NA Intergenic Intergenic 17767 ENSMUSG00000112940.1 ENSMUSG00000112940 ENSMUST00000223541 4930511J24Rik lincRNA Interval_173075 chrX 70531463 70531773 + 0 NA Intergenic Intergenic -4662 ENSMUSG00000080843.1 ENSMUSG00000080843 ENSMUST00000120623 Gm14726 unprocessed_pseudogene Interval_131507 chr5 137628232 137631663 + 0 NA promoter-TSS (ENSMUSG00000089984.7) protein_coding-promoter-TSS (ENSMUSG00000089984.7) 772 ENSMUSG00000029720.9 ENSMUSG00000029720 ENSMUST00000177545 Gm20605 protein_coding Interval_158140 chr8 79127248 79127770 + 0 NA intron (ENSMUSG00000071064.15, intron 7 of 13) protein_coding-intron (ENSMUSG00000071064.15, intron 7 of 14) -98421 ENSMUSG00000110388.1 ENSMUSG00000110388 ENSMUST00000211572 Gm30329 antisense Interval_68244 chr16 70798075 70798715 + 0 NA Intergenic Intergenic -50673 ENSMUSG00000116742.1 ENSMUSG00000116742 ENSMUST00000232475 Gm49665 processed_pseudogene Interval_80210 chr18 38284611 38285043 + 0 NA promoter-TSS (ENSMUSG00000024440.13) protein_coding-promoter-TSS (ENSMUSG00000024440.13) -6868 ENSMUSG00000024440.13 ENSMUSG00000024440 ENSMUST00000193123 Pcdh12 protein_coding Interval_80021 chr18 36691355 36691625 + 0 NA TTS (ENSMUSG00000044719.5) protein_coding-TTS (ENSMUSG00000044719.5) 2083 ENSMUSG00000044719.5 ENSMUSG00000044719 ENSMUST00000235134 E230025N22Rik protein_coding Interval_129750 chr5 122114368 122114640 + 0 NA intron (ENSMUSG00000043036.13, intron 9 of 12) protein_coding-intron (ENSMUSG00000043036.13, intron 9 of 12) -3391 ENSMUSG00000043036.13 ENSMUSG00000043036 ENSMUST00000196608 Ccdc63 protein_coding Interval_129426 chr5 120102711 120103347 + 0 NA Intergenic Intergenic 36234 ENSMUSG00000097368.2 ENSMUSG00000097368 ENSMUST00000181905 Gm10390 antisense Interval_38263 chr12 76784253 76785241 + 0 NA intron (ENSMUSG00000033373.16, intron 3 of 13) protein_coding-intron (ENSMUSG00000033373.16, intron 2 of 12) 10750 ENSMUSG00000042808.8 ENSMUSG00000042808 ENSMUST00000220569 Gpx2 protein_coding Interval_87204 chr19 46850509 46851281 + 0 NA intron (ENSMUSG00000064105.13, intron 1 of 1) protein_coding-intron (ENSMUSG00000064105.13, intron 1 of 6) -14765 ENSMUSG00000064105.13 ENSMUSG00000064105 ENSMUST00000235671 Cnnm2 protein_coding Interval_156971 chr8 63123121 63123663 + 0 NA intron (ENSMUSG00000054162.15, intron 4 of 5) protein_coding-intron (ENSMUSG00000054162.15, intron 3 of 10) -14585 ENSMUSG00000088419.1 ENSMUSG00000088419 ENSMUST00000157794 Gm24236 snoRNA Interval_34301 chr12 3237071 3237572 + 0 NA exon (ENSMUSG00000079179.9, exon 2 of 7) antisense-exon (ENSMUSG00000079179.9, exon 2 of 7) 1406 ENSMUSG00000079179.9 ENSMUSG00000079179 ENSMUST00000049684 Rab10os antisense Interval_133922 chr6 15710604 15710911 + 0 NA Intergenic Intergenic -9904 ENSMUSG00000041390.18 ENSMUSG00000041390 ENSMUST00000128849 Mdfic protein_coding Interval_121804 chr5 8393083 8393697 + 0 NA Intergenic Intergenic 29279 ENSMUSG00000002297.16 ENSMUSG00000002297 ENSMUST00000198785 Dbf4 protein_coding Interval_23405 chr11 22278778 22278988 + 0 NA intron (ENSMUSG00000042302.14, intron 2 of 4) protein_coding-intron (ENSMUSG00000042302.14, intron 1 of 23) 7912 ENSMUSG00000042302.14 ENSMUSG00000042302 ENSMUST00000137594 Ehbp1 protein_coding Interval_121104 chr4 153079527 153079736 + 0 NA Intergenic Intergenic -66047 ENSMUSG00000080360.1 ENSMUSG00000080360 ENSMUST00000116710 Gm25779 miRNA Interval_159267 chr8 92618509 92618965 + 0 NA Intergenic Intergenic -56089 ENSMUSG00000031738.14 ENSMUSG00000031738 ENSMUST00000167261 Irx6 protein_coding Interval_113714 chr4 57810440 57810739 + 0 NA intron (ENSMUSG00000038729.24, intron 1 of 1) protein_coding-intron (ENSMUSG00000038729.24, intron 2 of 2) -10461 ENSMUSG00000038729.24 ENSMUSG00000038729 ENSMUST00000102902 Pakap protein_coding Interval_159273 chr8 92678198 92678824 + 0 NA exon (ENSMUSG00000031738.14, exon 5 of 6) protein_coding-exon (ENSMUSG00000031738.14, exon 5 of 6) 3683 ENSMUSG00000110023.1 ENSMUSG00000110023 ENSMUST00000210252 Gm45505 antisense Interval_39221 chr12 85986145 85986357 + 0 NA intron (ENSMUSG00000012609.19, intron 1 of 5) protein_coding-intron (ENSMUSG00000012609.19, intron 29 of 33) -7230 ENSMUSG00000097902.2 ENSMUSG00000097902 ENSMUST00000181727 Gm26531 antisense Interval_119637 chr4 138884250 138884573 + 0 NA Intergenic Intergenic 5051 ENSMUSG00000028751.13 ENSMUSG00000028751 ENSMUST00000105804 Pla2g2e protein_coding Interval_35293 chr12 19963834 19965746 + 0 NA Intergenic Intergenic 3844 ENSMUSG00000112956.1 ENSMUSG00000112956 ENSMUST00000221058 Gm48645 processed_pseudogene Interval_142745 chr6 145297613 145297827 + 0 NA Intergenic Intergenic -5432 ENSMUSG00000087277.1 ENSMUSG00000087277 ENSMUST00000126922 2010013B24Rik lincRNA Interval_45481 chr13 55378478 55379775 + 0 NA promoter-TSS (ENSMUSG00000052087.14) protein_coding-promoter-TSS (ENSMUSG00000052087.14) 2144 ENSMUSG00000052087.14 ENSMUSG00000052087 ENSMUST00000135851 Rgs14 protein_coding Interval_94789 chr2 94316380 94317177 + 0 NA intron (ENSMUSG00000027194.16, intron 22 of 24) protein_coding-intron (ENSMUSG00000027194.16, intron 12 of 14) -52170 ENSMUSG00000075020.6 ENSMUSG00000075020 ENSMUST00000134563 Mir670hg lincRNA Interval_27867 chr11 70516498 70516760 + 0 NA Intergenic Intergenic 1414 ENSMUSG00000081690.1 ENSMUSG00000081690 ENSMUST00000122307 Gm12317 processed_pseudogene Interval_21271 chr10 127577961 127578400 + 0 NA TTS (ENSMUSG00000040249.15) protein_coding-TTS (ENSMUSG00000040249.15) -18368 ENSMUSG00000086499.1 ENSMUSG00000086499 ENSMUST00000124182 Gm16217 antisense Interval_60782 chr15 76718424 76718716 + 0 NA promoter-TSS (ENSMUSG00000033707.9) protein_coding-promoter-TSS (ENSMUSG00000033707.9) -154 ENSMUSG00000033707.9 ENSMUSG00000033707 ENSMUST00000146725 Lrrc24 protein_coding Interval_156521 chr8 49312469 49313960 + 0 NA Intergenic Intergenic -57672 ENSMUSG00000031559.15 ENSMUSG00000031559 ENSMUST00000126285 4930555F03Rik lincRNA Interval_112000 chr4 33124343 33124711 + 0 NA Intergenic Intergenic -7994 ENSMUSG00000028280.9 ENSMUSG00000028280 ENSMUST00000029947 Gabrr1 protein_coding Interval_91380 chr2 38402994 38404022 + 0 NA Intergenic Intergenic -20494 ENSMUSG00000085950.1 ENSMUSG00000085950 ENSMUST00000146404 Gm13589 lincRNA Interval_167691 chr9 72039870 72041108 + 0 NA TTS (ENSMUSG00000102874.1) TEC-TTS (ENSMUSG00000102874.1) 2746 ENSMUSG00000102874.1 ENSMUSG00000102874 ENSMUST00000195138 Gm37137 TEC Interval_147838 chr7 74023652 74025526 + 0 NA Intergenic Intergenic -10899 ENSMUSG00000025789.9 ENSMUSG00000025789 ENSMUST00000191970 St8sia2 protein_coding Interval_61100 chr15 79223272 79225178 + 0 NA intron (ENSMUSG00000075555.12, intron 3 of 3) processed_transcript-intron (ENSMUSG00000075555.12, intron 3 of 3) -5166 ENSMUSG00000116121.1 ENSMUSG00000116121 ENSMUST00000053926 Gm49486 protein_coding Interval_137671 chr6 78525001 78525298 + 0 NA Intergenic Intergenic -27708 ENSMUSG00000108073.1 ENSMUSG00000108073 ENSMUST00000203989 Gm6072 processed_pseudogene Interval_172648 chrX 39720864 39721850 + 0 NA Intergenic Intergenic 29859 ENSMUSG00000082147.1 ENSMUSG00000082147 ENSMUST00000119444 Gm14570 processed_pseudogene Interval_73515 chr17 38683529 38683765 + 0 NA Intergenic Intergenic -35545 ENSMUSG00000117273.1 ENSMUSG00000117273 ENSMUST00000233036 Gm49815 unprocessed_pseudogene Interval_112751 chr4 44601785 44602973 + 0 NA intron (ENSMUSG00000014030.15, intron 6 of 8) protein_coding-intron (ENSMUSG00000014030.15, intron 6 of 8) 5189 ENSMUSG00000092761.1 ENSMUSG00000092761 ENSMUST00000175020 Mir5120 miRNA Interval_127042 chr5 99891754 99892311 + 0 NA Intergenic Intergenic -14235 ENSMUSG00000105078.2 ENSMUSG00000105078 ENSMUST00000200398 Vamp9 protein_coding Interval_88244 chr19 61097523 61098655 + 0 NA intron (ENSMUSG00000074733.14, intron 3 of 6) protein_coding-intron (ENSMUSG00000074733.14, intron 3 of 6) 42728 ENSMUSG00000074733.14 ENSMUSG00000074733 ENSMUST00000148569 Zfp950 protein_coding Interval_140741 chr6 120977874 120978669 + 0 NA intron (ENSMUSG00000051586.17, intron 20 of 33) protein_coding-intron (ENSMUSG00000051586.17, intron 4 of 15) 19427 ENSMUSG00000108171.1 ENSMUSG00000108171 ENSMUST00000203013 Gm43915 antisense Interval_149695 chr7 100699553 100700741 + 0 NA Intergenic Intergenic 25059 ENSMUSG00000108866.1 ENSMUSG00000108866 ENSMUST00000208164 Gm35082 lincRNA Interval_146156 chr7 44403223 44403651 + 0 NA Intergenic Intergenic 17037 ENSMUSG00000108372.1 ENSMUSG00000108372 ENSMUST00000206723 Gm45124 TEC Interval_51122 chr14 23684660 23686053 + 0 NA intron (ENSMUSG00000063142.15, intron 1 of 28) protein_coding-intron (ENSMUSG00000063142.15, intron 1 of 28) 125108 ENSMUSG00000100100.1 ENSMUSG00000100100 ENSMUST00000187439 Gm29626 antisense Interval_72369 chr17 29442178 29442685 + 0 NA intron (ENSMUSG00000117427.1, intron 2 of 2) lincRNA-intron (ENSMUSG00000117427.1, intron 1 of 3) -7674 ENSMUSG00000117575.1 ENSMUSG00000117575 ENSMUST00000234181 Gm36486 processed_transcript Interval_37284 chr12 64793802 64794040 + 0 NA Intergenic Intergenic 7610 ENSMUSG00000091905.3 ENSMUSG00000091905 ENSMUST00000167639 Dnajb6-ps processed_pseudogene Interval_37722 chr12 71426120 71426869 + 0 NA intron (ENSMUSG00000113441.1, intron 2 of 5) lincRNA-intron (ENSMUSG00000113441.1, intron 2 of 5) -42286 ENSMUSG00000100668.1 ENSMUSG00000100668 ENSMUST00000190526 1700083H02Rik lincRNA Interval_114371 chr4 74383623 74383816 + 0 NA intron (ENSMUSG00000028397.13, intron 19 of 21) protein_coding-intron (ENSMUSG00000028397.13, intron 19 of 21) 120910 ENSMUSG00000028397.13 ENSMUSG00000028397 ENSMUST00000150439 Kdm4c protein_coding Interval_15460 chr10 47299285 47299474 + 0 NA Intergenic Intergenic 11196 ENSMUSG00000111719.1 ENSMUSG00000111719 ENSMUST00000213790 Gm19137 processed_pseudogene Interval_98740 chr2 154612987 154614318 + 0 NA promoter-TSS (ENSMUSG00000097602.2) antisense-promoter-TSS (ENSMUSG00000097602.2) -215 ENSMUSG00000097602.2 ENSMUSG00000097602 ENSMUST00000181369 4930519P11Rik antisense Interval_155773 chr8 37293509 37294294 + 0 NA Intergenic Intergenic 23677 ENSMUSG00000065277.1 ENSMUSG00000065277 ENSMUST00000083343 Gm25126 snRNA Interval_10159 chr1 166215389 166215727 + 0 NA intron (ENSMUSG00000040629.8, intron 7 of 10) protein_coding-intron (ENSMUSG00000040629.8, intron 8 of 11) 23189 ENSMUSG00000040629.8 ENSMUSG00000040629 ENSMUST00000038782 Mael protein_coding Interval_87034 chr19 45718304 45719732 + 0 NA Intergenic Intergenic 23897 ENSMUSG00000025219.13 ENSMUSG00000025219 ENSMUST00000111925 Fgf8 protein_coding Interval_31209 chr11 98916211 98916815 + 0 NA intron (ENSMUSG00000017499.15, intron 8 of 12) protein_coding-intron (ENSMUSG00000017499.15, intron 8 of 11) -3953 ENSMUSG00000017499.15 ENSMUSG00000017499 ENSMUST00000135862 Cdc6 protein_coding Interval_48192 chr13 97086293 97087836 + 0 NA intron (ENSMUSG00000041817.14, intron 1 of 12) protein_coding-intron (ENSMUSG00000041817.14, intron 1 of 12) 12173 ENSMUSG00000057762.6 ENSMUSG00000057762 ENSMUST00000071118 Gm6169 protein_coding Interval_113339 chr4 53568112 53568367 + 0 NA TTS (ENSMUSG00000028412.17) protein_coding-TTS (ENSMUSG00000028412.17) -3542 ENSMUSG00000084970.1 ENSMUSG00000084970 ENSMUST00000138377 1700060J05Rik antisense Interval_4439 chr1 74208696 74209666 + 0 NA Intergenic Intergenic -2561 ENSMUSG00000087820.1 ENSMUSG00000087820 ENSMUST00000157195 Mir1928 miRNA Interval_167799 chr9 72766420 72767323 + 0 NA Intergenic Intergenic 9354 ENSMUSG00000098294.1 ENSMUSG00000098294 ENSMUST00000184673 Gm27204 lincRNA Interval_144036 chr7 19092470 19096363 + 0 NA promoter-TSS (ENSMUSG00000040841.5) protein_coding-promoter-TSS (ENSMUSG00000040841.5) -178 ENSMUSG00000040841.5 ENSMUSG00000040841 ENSMUST00000049454 Six5 protein_coding Interval_56863 chr14 122534837 122535828 + 0 NA intron (ENSMUSG00000041650.15, intron 1 of 4) protein_coding-intron (ENSMUSG00000041650.15, intron 1 of 23) -21503 ENSMUSG00000115652.1 ENSMUSG00000115652 ENSMUST00000228120 Gm18143 processed_pseudogene Interval_68186 chr16 67242888 67243200 + 0 NA intron (ENSMUSG00000064115.13, intron 1 of 9) protein_coding-intron (ENSMUSG00000064115.13, intron 1 of 9) -4694 ENSMUSG00000116904.1 ENSMUSG00000116904 ENSMUST00000232322 Gm49640 processed_pseudogene Interval_12937 chr10 8323173 8324597 + 0 NA intron (ENSMUSG00000047712.8, intron 3 of 7) protein_coding-intron (ENSMUSG00000047712.8, intron 3 of 7) -21643 ENSMUSG00000047712.8 ENSMUSG00000047712 ENSMUST00000061601 Ust protein_coding Interval_134133 chr6 21438658 21439297 + 0 NA intron (ENSMUSG00000060882.5, intron 1 of 5) protein_coding-intron (ENSMUSG00000060882.5, intron 1 of 5) -52684 ENSMUSG00000107097.1 ENSMUSG00000107097 ENSMUST00000201404 Gm42584 processed_pseudogene Interval_44348 chr13 43976041 43976854 + 0 NA Intergenic Intergenic 27568 ENSMUSG00000113671.1 ENSMUSG00000113671 ENSMUST00000222566 Gm2233 lincRNA Interval_14623 chr10 37140708 37141480 + 0 NA promoter-TSS (ENSMUSG00000046463.5) processed_transcript-promoter-TSS (ENSMUSG00000046463.5) 5 ENSMUSG00000046463.5 ENSMUSG00000046463 ENSMUST00000217338 5930403N24Rik processed_transcript Interval_86259 chr19 38208442 38208829 + 0 NA intron (ENSMUSG00000054237.6, intron 7 of 8) protein_coding-intron (ENSMUSG00000054237.6, intron 7 of 13) 15503 ENSMUSG00000054237.6 ENSMUSG00000054237 ENSMUST00000238154 Fra10ac1 protein_coding Interval_85017 chr19 21570753 21571923 + 0 NA Intergenic Intergenic 19134 ENSMUSG00000079382.3 ENSMUSG00000079382 ENSMUST00000112772 Gm3443 transcribed_unitary_pseudogene Interval_151888 chr7 127343523 127343843 + 0 NA exon (ENSMUSG00000047371.7, exon 2 of 2) protein_coding-exon (ENSMUSG00000047371.7, exon 2 of 2) 1906 ENSMUSG00000047371.7 ENSMUSG00000047371 ENSMUST00000205266 Zfp768 protein_coding Interval_172375 chrX 14655817 14656021 + 0 NA Intergenic Intergenic -140816 ENSMUSG00000084907.1 ENSMUSG00000084907 ENSMUST00000145383 Gm14505 lincRNA Interval_11192 chr1 180009145 180009400 + 0 NA intron (ENSMUSG00000026490.18, intron 2 of 37) protein_coding-intron (ENSMUSG00000026490.18, intron 2 of 34) -11790 ENSMUSG00000102194.1 ENSMUSG00000102194 ENSMUST00000191822 Gm38169 TEC Interval_102418 chr3 25127435 25128494 + 0 NA intron (ENSMUSG00000102758.3, intron 1 of 2) protein_coding-intron (ENSMUSG00000102758.3, intron 1 of 2) -16104 ENSMUSG00000102876.1 ENSMUSG00000102876 ENSMUST00000194368 Gm37136 TEC Interval_70762 chr17 14221780 14222778 + 0 NA Intergenic Intergenic -17975 ENSMUSG00000048826.7 ENSMUSG00000048826 ENSMUST00000232816 Dact2 protein_coding Interval_148291 chr7 80325751 80326347 + 0 NA exon (ENSMUSG00000030533.16, exon 19 of 20) protein_coding-exon (ENSMUSG00000030533.16, exon 19 of 20) -1915 ENSMUSG00000038930.11 ENSMUSG00000038930 ENSMUST00000155124 Rccd1 protein_coding Interval_109156 chr3 137007542 137007731 + 0 NA Intergenic Intergenic -52543 ENSMUSG00000104617.1 ENSMUSG00000104617 ENSMUST00000196582 Gm43356 lincRNA Interval_50818 chr14 20010393 20011388 + 0 NA Intergenic Intergenic -33706 ENSMUSG00000043004.13 ENSMUSG00000043004 ENSMUST00000161247 Gng2 protein_coding Interval_124691 chr5 53322692 53323369 + 0 NA Intergenic Intergenic 23342 ENSMUSG00000077696.1 ENSMUSG00000077696 ENSMUST00000104508 n-R5s172 rRNA Interval_9207 chr1 155065377 155065891 + 0 NA intron (ENSMUSG00000096950.2, intron 4 of 6) lincRNA-intron (ENSMUSG00000096950.2, intron 4 of 6) -8455 ENSMUSG00000101880.1 ENSMUSG00000101880 ENSMUST00000190720 Gm29282 lincRNA Interval_101771 chr3 9491619 9492522 + 0 NA intron (ENSMUSG00000040209.12, intron 1 of 9) protein_coding-intron (ENSMUSG00000040209.12, intron 2 of 8) -4098 ENSMUSG00000103485.1 ENSMUSG00000103485 ENSMUST00000192900 Gm38001 TEC Interval_107567 chr3 108520446 108520710 + 0 NA intron (ENSMUSG00000040412.17, intron 1 of 1) protein_coding-intron (ENSMUSG00000040412.17, intron 1 of 20) -13572 ENSMUSG00000027886.7 ENSMUSG00000027886 ENSMUST00000029485 1700013F07Rik protein_coding Interval_92241 chr2 57274071 57274376 + 0 NA intron (ENSMUSG00000084292.1, intron 2 of 2) protein_coding-intron (ENSMUSG00000026827.12, intron 2 of 16) 1463 ENSMUSG00000084292.1 ENSMUSG00000084292 ENSMUST00000118714 Gm13535 processed_pseudogene Interval_163304 chr9 20738089 20739167 + 0 NA intron (ENSMUSG00000032172.8, intron 1 of 5) protein_coding-intron (ENSMUSG00000032172.8, intron 1 of 5) -11691 ENSMUSG00000032172.8 ENSMUSG00000032172 ENSMUST00000215039 Olfm2 protein_coding Interval_24660 chr11 35729449 35729869 + 0 NA Intergenic Intergenic -39825 ENSMUSG00000018846.8 ENSMUSG00000018846 ENSMUST00000018990 Pank3 protein_coding Interval_122421 chr5 22485007 22485421 + 0 NA Intergenic Intergenic -12222 ENSMUSG00000105081.1 ENSMUSG00000105081 ENSMUST00000198877 Gm43110 processed_pseudogene Interval_130799 chr5 130702280 130702522 + 0 NA intron (ENSMUSG00000060371.12, intron 4 of 5) protein_coding-intron (ENSMUSG00000060371.12, intron 5 of 6) -80300 ENSMUSG00000088972.2 ENSMUSG00000088972 ENSMUST00000158347 Gm23761 snRNA Interval_25868 chr11 52253495 52254280 + 0 NA exon (ENSMUSG00000000782.16, exon 10 of 10) protein_coding-exon (ENSMUSG00000000782.16, exon 10 of 10) 20163 ENSMUSG00000086920.1 ENSMUSG00000086920 ENSMUST00000143016 Gm12207 antisense Interval_151421 chr7 122245878 122246718 + 0 NA Intergenic Intergenic 3727 ENSMUSG00000108708.1 ENSMUSG00000108708 ENSMUST00000206804 Gm29977 processed_pseudogene Interval_94497 chr2 91673301 91675030 + 0 NA TTS (ENSMUSG00000027244.14) protein_coding-TTS (ENSMUSG00000027244.14) 11087 ENSMUSG00000027244.14 ENSMUSG00000027244 ENSMUST00000136412 Atg13 protein_coding Interval_4225 chr1 71741161 71741666 + 0 NA Intergenic Intergenic -26489 ENSMUSG00000100319.1 ENSMUSG00000100319 ENSMUST00000191412 Gm5256 processed_pseudogene Interval_83200 chr18 82729691 82730191 + 0 NA promoter-TSS (ENSMUSG00000117849.1) processed_pseudogene-promoter-TSS (ENSMUSG00000117849.1) 40 ENSMUSG00000117849.1 ENSMUSG00000117849 ENSMUST00000237986 Gm50355 processed_pseudogene Interval_46591 chr13 67425857 67426056 + 0 NA exon (ENSMUSG00000069206.14, exon 5 of 5) protein_coding-exon (ENSMUSG00000069206.14, exon 5 of 5) -4548 ENSMUSG00000055560.8 ENSMUSG00000055560 ENSMUST00000224496 Zfp459 protein_coding Interval_106795 chr3 100879445 100879757 + 0 NA intron (ENSMUSG00000051076.8, intron 2 of 5) protein_coding-intron (ENSMUSG00000051076.8, intron 2 of 5) -43311 ENSMUSG00000033233.17 ENSMUSG00000033233 ENSMUST00000134993 Trim45 protein_coding Interval_43225 chr13 25925555 25926424 + 0 NA intron (ENSMUSG00000086531.2, intron 2 of 2) lincRNA-intron (ENSMUSG00000086531.2, intron 2 of 3) 60304 ENSMUSG00000086531.2 ENSMUSG00000086531 ENSMUST00000225724 Gm11351 lincRNA Interval_71051 chr17 17448646 17450351 + 0 NA intron (ENSMUSG00000047786.12, intron 1 of 2) protein_coding-intron (ENSMUSG00000047786.12, intron 4 of 5) 678 ENSMUSG00000047786.12 ENSMUSG00000047786 ENSMUST00000140134 Lix1 protein_coding Interval_78602 chr18 15071638 15071858 + 0 NA intron (ENSMUSG00000036225.15, intron 1 of 4) protein_coding-intron (ENSMUSG00000036225.15, intron 1 of 4) -7650 ENSMUSG00000036225.15 ENSMUSG00000036225 ENSMUST00000234685 Kctd1 protein_coding Interval_60700 chr15 76239118 76239507 + 0 NA intron (ENSMUSG00000063268.12, intron 8 of 9) protein_coding-intron (ENSMUSG00000063268.12, intron 9 of 10) -4839 ENSMUSG00000063268.12 ENSMUSG00000063268 ENSMUST00000170851 Parp10 protein_coding Interval_73679 chr17 42727695 42728305 + 0 NA TTS (ENSMUSG00000117163.1) processed_pseudogene-TTS (ENSMUSG00000117163.1) 827 ENSMUSG00000117163.1 ENSMUSG00000117163 ENSMUST00000233378 Gm5978 processed_pseudogene Interval_64860 chr16 16664329 16665267 + 0 NA Intergenic Intergenic 7712 ENSMUSG00000108454.1 ENSMUSG00000108454 ENSMUST00000206799 Gm44932 unprocessed_pseudogene Interval_33373 chr11 116178657 116179211 + 0 NA TTS (ENSMUSG00000020777.16) protein_coding-TTS (ENSMUSG00000020777.16) 2280 ENSMUSG00000020777.16 ENSMUSG00000020777 ENSMUST00000124684 Acox1 protein_coding Interval_51608 chr14 30677363 30677600 + 0 NA intron (ENSMUSG00000052395.17, intron 8 of 12) protein_coding-intron (ENSMUSG00000052395.17, intron 8 of 12) 23074 ENSMUSG00000052395.17 ENSMUSG00000052395 ENSMUST00000226805 Rft1 protein_coding Interval_173710 chrX 102302527 102303708 + 0 NA intron (ENSMUSG00000085568.7, intron 3 of 3) protein_coding-intron (ENSMUSG00000067567.12, intron 10 of 10) -47592 ENSMUSG00000093428.1 ENSMUSG00000093428 ENSMUST00000176507 Gm26318 miRNA Interval_164527 chr9 37752819 37753098 + 0 NA Intergenic Intergenic 7852 ENSMUSG00000063350.6 ENSMUSG00000063350 ENSMUST00000115004 Olfr874 protein_coding Interval_92678 chr2 62440954 62441580 + 0 NA promoter-TSS (ENSMUSG00000087681.1) lincRNA-promoter-TSS (ENSMUSG00000087681.1) -125 ENSMUSG00000087681.1 ENSMUSG00000087681 ENSMUST00000133596 Gm13565 lincRNA Interval_64841 chr16 16366927 16368055 + 0 NA Intergenic Intergenic -1334 ENSMUSG00000098037.1 ENSMUSG00000098037 ENSMUST00000182585 Gm7765 processed_pseudogene Interval_31827 chr11 103170496 103172196 + 0 NA promoter-TSS (ENSMUSG00000055805.15) protein_coding-promoter-TSS (ENSMUSG00000055805.15) 239 ENSMUSG00000055805.15 ENSMUSG00000055805 ENSMUST00000129726 Fmnl1 protein_coding Interval_66770 chr16 37489363 37489586 + 0 NA Intergenic Intergenic 50302 ENSMUSG00000022828.10 ENSMUSG00000022828 ENSMUST00000130350 Gtf2e1 protein_coding Interval_143620 chr7 13278074 13279422 + 0 NA promoter-TSS (ENSMUSG00000056394.17) protein_coding-promoter-TSS (ENSMUSG00000056394.17) -107 ENSMUSG00000056394.17 ENSMUSG00000056394 ENSMUST00000131294 Lig1 protein_coding Interval_80518 chr18 43277501 43278012 + 0 NA intron (ENSMUSG00000039954.9, intron 5 of 11) protein_coding-intron (ENSMUSG00000039954.9, intron 5 of 12) 70079 ENSMUSG00000039954.9 ENSMUSG00000039954 ENSMUST00000235682 Stk32a protein_coding Interval_36155 chr12 36713888 36714593 + 0 NA Intergenic Intergenic -101965 ENSMUSG00000092998.1 ENSMUSG00000092998 ENSMUST00000175257 Mir5099 miRNA Interval_6832 chr1 119946455 119946688 + 0 NA intron (ENSMUSG00000036962.12, intron 14 of 23) protein_coding-intron (ENSMUSG00000036962.12, intron 13 of 22) -33363 ENSMUSG00000036975.5 ENSMUSG00000036975 ENSMUST00000037906 Tmem177 protein_coding Interval_67974 chr16 62322781 62323062 + 0 NA Intergenic Intergenic 161028 ENSMUSG00000118558.1 ENSMUSG00000118558 ENSMUST00000239089 CT010569.1 processed_pseudogene Interval_120778 chr4 150599425 150600282 + 0 NA intron (ENSMUSG00000039852.17, intron 3 of 4) protein_coding-intron (ENSMUSG00000039852.17, intron 6 of 16) -15562 ENSMUSG00000039852.17 ENSMUSG00000039852 ENSMUST00000136646 Rere protein_coding Interval_150113 chr7 106770577 106770836 + 0 NA Intergenic Intergenic -15309 ENSMUSG00000059087.4 ENSMUSG00000059087 ENSMUST00000074981 Olfr698 protein_coding Interval_128679 chr5 114673961 114675675 + 0 NA intron (ENSMUSG00000011884.13, intron 3 of 4) protein_coding-intron (ENSMUSG00000011884.13, intron 3 of 4) 16123 ENSMUSG00000011884.13 ENSMUSG00000011884 ENSMUST00000112212 Gltp protein_coding Interval_168014 chr9 75409070 75410530 + 0 NA promoter-TSS (ENSMUSG00000042688.16) protein_coding-promoter-TSS (ENSMUSG00000042688.16) -384 ENSMUSG00000097021.7 ENSMUSG00000097021 ENSMUST00000180533 4933433G15Rik lincRNA Interval_31939 chr11 103966144 103967327 + 0 NA promoter-TSS (ENSMUSG00000062421.13) protein_coding-promoter-TSS (ENSMUSG00000062421.13) -12854 ENSMUSG00000062421.13 ENSMUSG00000062421 ENSMUST00000154089 Arf2 protein_coding Interval_70319 chr17 8447907 8448588 + 0 NA Intergenic Intergenic 12836 ENSMUSG00000062327.10 ENSMUSG00000062327 ENSMUST00000177118 T protein_coding Interval_163079 chr9 15063526 15063754 + 0 NA intron (ENSMUSG00000031936.9, intron 14 of 19) protein_coding-intron (ENSMUSG00000031936.9, intron 14 of 19) -19843 ENSMUSG00000031934.14 ENSMUSG00000031934 ENSMUST00000169288 Panx1 protein_coding Interval_96099 chr2 119741313 119744864 + 0 NA intron (ENSMUSG00000027296.7, intron 1 of 6) protein_coding-intron (ENSMUSG00000027296.7, intron 1 of 6) 751 ENSMUSG00000027296.7 ENSMUSG00000027296 ENSMUST00000028758 Itpka protein_coding Interval_120725 chr4 150280973 150282476 + 0 NA promoter-TSS (ENSMUSG00000039852.17) protein_coding-promoter-TSS (ENSMUSG00000039852.17) 33712 ENSMUSG00000085787.3 ENSMUSG00000085787 ENSMUST00000136346 Gm13092 processed_pseudogene Interval_134393 chr6 28202142 28203080 + 0 NA Intergenic Intergenic 12194 ENSMUSG00000106990.1 ENSMUSG00000106990 ENSMUST00000201159 Gm42547 TEC Interval_23259 chr11 20957954 20959001 + 0 NA Intergenic Intergenic -20776 ENSMUSG00000096061.1 ENSMUSG00000096061 ENSMUST00000178821 Gm23681 miRNA Interval_22555 chr11 11746551 11746765 + 0 NA intron (ENSMUSG00000018654.17, intron 4 of 8) protein_coding-intron (ENSMUSG00000018654.17, intron 3 of 6) -50219 ENSMUSG00000073145.6 ENSMUSG00000073145 ENSMUST00000132007 Gm12000 antisense Interval_6589 chr1 117796831 117797102 + 0 NA intron (ENSMUSG00000101303.1, intron 3 of 3) protein_coding-intron (ENSMUSG00000101303.1, intron 3 of 3) 15833 ENSMUSG00000101303.1 ENSMUSG00000101303 ENSMUST00000188801 B020011L13Rik protein_coding Interval_76047 chr17 74565211 74566090 + 0 NA intron (ENSMUSG00000024073.16, intron 6 of 72) protein_coding-intron (ENSMUSG00000024073.16, intron 6 of 72) -38006 ENSMUSG00000117358.1 ENSMUSG00000117358 ENSMUST00000234285 Gm31645 processed_transcript Interval_17671 chr10 78894628 78895225 + 0 NA Intergenic Intergenic -18367 ENSMUSG00000094673.4 ENSMUSG00000094673 ENSMUST00000075859 Olfr1354 protein_coding Interval_86293 chr19 38434553 38434762 + 0 NA Intergenic Intergenic 38545 ENSMUSG00000088940.1 ENSMUSG00000088940 ENSMUST00000158315 Gm24930 misc_RNA Interval_65954 chr16 30510511 30510973 + 0 NA Intergenic Intergenic 32755 ENSMUSG00000022537.18 ENSMUSG00000022537 ENSMUST00000153380 Tmem44 protein_coding Interval_173628 chrX 101260405 101261289 + 0 NA TTS (ENSMUSG00000042903.8) protein_coding-TTS (ENSMUSG00000042903.8) 3128 ENSMUSG00000090141.1 ENSMUSG00000090141 ENSMUST00000101358 Gm614 protein_coding Interval_130855 chr5 132632938 132633774 + 0 NA Intergenic Intergenic 87300 ENSMUSG00000105809.1 ENSMUSG00000105809 ENSMUST00000196866 Gm42626 lincRNA Interval_53554 chr14 59104368 59105064 + 0 NA Intergenic Intergenic -17598 ENSMUSG00000114289.1 ENSMUSG00000114289 ENSMUST00000223800 Gm48453 lincRNA Interval_88338 chr2 4120141 4120680 + 0 NA intron (ENSMUSG00000026657.17, intron 2 of 24) protein_coding-intron (ENSMUSG00000026657.17, intron 1 of 1) 16533 ENSMUSG00000102517.1 ENSMUSG00000102517 ENSMUST00000195785 Gm38085 sense_intronic Interval_92458 chr2 59831642 59832213 + 0 NA intron (ENSMUSG00000035168.16, intron 18 of 25) protein_coding-intron (ENSMUSG00000035168.16, intron 19 of 26) 25859 ENSMUSG00000035168.16 ENSMUSG00000035168 ENSMUST00000147650 Tanc1 protein_coding Interval_63744 chr15 103207380 103208377 + 0 NA intron (ENSMUSG00000009575.14, intron 3 of 5) protein_coding-intron (ENSMUSG00000009575.14, intron 2 of 4) 7488 ENSMUSG00000009575.14 ENSMUSG00000009575 ENSMUST00000127191 Cbx5 protein_coding Interval_98279 chr2 150771382 150771596 + 0 NA exon (ENSMUSG00000033068.16, exon 14 of 14) protein_coding-exon (ENSMUSG00000033068.16, exon 14 of 14) 22408 ENSMUSG00000033068.16 ENSMUSG00000033068 ENSMUST00000139723 Entpd6 protein_coding Interval_65105 chr16 19307922 19308706 + 0 NA TTS (ENSMUSG00000089036.1) snoRNA-TTS (ENSMUSG00000089036.1) 615 ENSMUSG00000089036.1 ENSMUSG00000089036 ENSMUST00000158411 Gm22158 snoRNA Interval_50036 chr13 119878732 119879092 + 0 NA exon (ENSMUSG00000104162.1, exon 1 of 1) processed_pseudogene-exon (ENSMUSG00000104162.1, exon 1 of 1) 620 ENSMUSG00000104162.1 ENSMUSG00000104162 ENSMUST00000193219 Gm37619 processed_pseudogene Interval_136546 chr6 55444003 55444537 + 0 NA Intergenic Intergenic -15966 ENSMUSG00000029778.12 ENSMUSG00000029778 ENSMUST00000165786 Adcyap1r1 protein_coding Interval_1602 chr1 29535704 29536671 + 0 NA Intergenic Intergenic -50272 ENSMUSG00000099492.1 ENSMUSG00000099492 ENSMUST00000190438 Gm5525 processed_pseudogene Interval_133771 chr6 11969648 11970602 + 0 NA intron (ENSMUSG00000029629.17, intron 5 of 5) protein_coding-intron (ENSMUSG00000029629.17, intron 7 of 15) -62642 ENSMUSG00000029632.7 ENSMUSG00000029632 ENSMUST00000204714 Ndufa4 protein_coding Interval_108457 chr3 127398295 127399580 + 0 NA intron (ENSMUSG00000032826.19, intron 1 of 1) protein_coding-intron (ENSMUSG00000032826.19, intron 1 of 14) -5231 ENSMUSG00000105822.1 ENSMUSG00000105822 ENSMUST00000199858 Gm42969 TEC Interval_142708 chr6 145078195 145080032 + 0 NA Intergenic Intergenic 22724 ENSMUSG00000086643.1 ENSMUSG00000086643 ENSMUST00000141440 Gm15687 antisense Interval_30726 chr11 96138924 96141475 + 0 NA intron (ENSMUSG00000038756.13, intron 6 of 14) protein_coding-intron (ENSMUSG00000038756.13, intron 5 of 13) 6413 ENSMUSG00000038756.13 ENSMUSG00000038756 ENSMUST00000107680 Ttll6 protein_coding Interval_163854 chr9 27154820 27155706 + 0 NA intron (ENSMUSG00000031990.15, intron 1 of 2) protein_coding-intron (ENSMUSG00000031990.15, intron 1 of 8) -28713 ENSMUSG00000031990.15 ENSMUSG00000031990 ENSMUST00000213682 Jam3 protein_coding Interval_160559 chr8 110651081 110651343 + 0 NA intron (ENSMUSG00000010936.11, intron 1 of 6) protein_coding-intron (ENSMUSG00000010936.11, intron 10 of 18) 5632 ENSMUSG00000010936.11 ENSMUSG00000010936 ENSMUST00000213015 Vac14 protein_coding Interval_104507 chr3 66985524 66986388 + 0 NA promoter-TSS (ENSMUSG00000034544.17) protein_coding-intron (ENSMUSG00000034544.17, intron 1 of 8) -5016 ENSMUSG00000034544.17 ENSMUSG00000034544 ENSMUST00000182708 Rsrc1 protein_coding Interval_37702 chr12 71242011 71242442 + 0 NA intron (ENSMUSG00000034601.17, intron 29 of 29) protein_coding-intron (ENSMUSG00000034601.17, intron 27 of 27) 28131 ENSMUSG00000113572.1 ENSMUSG00000113572 ENSMUST00000221823 Gm7959 processed_pseudogene Interval_110104 chr3 153316063 153316295 + 0 NA intron (ENSMUSG00000052544.9, intron 3 of 4) protein_coding-intron (ENSMUSG00000052544.9, intron 2 of 2) 2466 ENSMUSG00000099114.1 ENSMUSG00000099114 ENSMUST00000184201 Gm27405 miRNA Interval_66131 chr16 31851601 31851913 + 0 NA intron (ENSMUSG00000022770.17, intron 1 of 4) protein_coding-intron (ENSMUSG00000022770.17, intron 18 of 24) -27053 ENSMUSG00000022780.5 ENSMUSG00000022780 ENSMUST00000023464 Meltf protein_coding Interval_96425 chr2 122392210 122392435 + 0 NA Intergenic Intergenic -6682 ENSMUSG00000088506.1 ENSMUSG00000088506 ENSMUST00000157881 Gm24409 snRNA Interval_35315 chr12 20464530 20465740 + 0 NA Intergenic Intergenic 13460 ENSMUSG00000116537.1 ENSMUSG00000116537 ENSMUST00000232443 Gm49698 lincRNA Interval_139891 chr6 112459423 112459653 + 0 NA promoter-TSS (ENSMUSG00000062694.7) protein_coding-promoter-TSS (ENSMUSG00000062694.7) 33 ENSMUSG00000062694.7 ENSMUSG00000062694 ENSMUST00000075477 Cav3 protein_coding Interval_147462 chr7 67475054 67476048 + 0 NA Intergenic Intergenic -31618 ENSMUSG00000109329.1 ENSMUSG00000109329 ENSMUST00000208755 Gm33926 lincRNA Interval_3975 chr1 65282764 65283359 + 0 NA intron (ENSMUSG00000025946.13, intron 1 of 5) protein_coding-intron (ENSMUSG00000025946.13, intron 1 of 5) 1005 ENSMUSG00000025946.13 ENSMUSG00000025946 ENSMUST00000027083 Pth2r protein_coding Interval_142645 chr6 144570209 144571545 + 0 NA intron (ENSMUSG00000041540.16, intron 3 of 6) protein_coding-intron (ENSMUSG00000041540.16, intron 3 of 13) 89652 ENSMUSG00000087157.1 ENSMUSG00000087157 ENSMUST00000156443 Sox5os2 antisense Interval_51623 chr14 30866696 30867290 + 0 NA intron (ENSMUSG00000006526.13, intron 2 of 5) protein_coding-intron (ENSMUSG00000006526.13, intron 4 of 7) -12207 ENSMUSG00000042485.7 ENSMUSG00000042485 ENSMUST00000040715 Mustn1 protein_coding Interval_36559 chr12 49728230 49728432 + 0 NA Intergenic Intergenic 48444 ENSMUSG00000112605.1 ENSMUSG00000112605 ENSMUST00000220112 Gm7476 processed_pseudogene Interval_114892 chr4 86747999 86749462 + 0 NA exon (ENSMUSG00000038024.17, exon 1 of 26) protein_coding-exon (ENSMUSG00000038024.17, exon 1 of 26) -25525 ENSMUSG00000038024.17 ENSMUSG00000038024 ENSMUST00000128710 Dennd4c protein_coding Interval_95430 chr2 109277995 109278371 + 0 NA promoter-TSS (ENSMUSG00000057234.9) protein_coding-promoter-TSS (ENSMUSG00000057234.9) 2565 ENSMUSG00000057234.9 ENSMUSG00000057234 ENSMUST00000145535 Mettl15 protein_coding Interval_118686 chr4 133198110 133198307 + 0 NA exon (ENSMUSG00000028868.13, exon 9 of 9) protein_coding-exon (ENSMUSG00000028868.13, exon 9 of 9) 2553 ENSMUSG00000099202.1 ENSMUSG00000099202 ENSMUST00000184894 Mir7017 miRNA Interval_38039 chr12 74516296 74516514 + 0 NA Intergenic Intergenic 77695 ENSMUSG00000113962.1 ENSMUSG00000113962 ENSMUST00000223276 Gm47618 processed_pseudogene Interval_95831 chr2 117043651 117043963 + 0 NA Intergenic Intergenic -11759 ENSMUSG00000074930.5 ENSMUSG00000074930 ENSMUST00000122360 Gm13981 processed_pseudogene Interval_106474 chr3 96576321 96577846 + 0 NA promoter-TSS (ENSMUSG00000087610.1) protein_coding-promoter-TSS (ENSMUSG00000087610.1) 99 ENSMUSG00000087610.1 ENSMUSG00000087610 ENSMUST00000148290 Gm16253 protein_coding Interval_108019 chr3 120011482 120012126 + 0 NA Intergenic Intergenic 43073 ENSMUSG00000104726.1 ENSMUSG00000104726 ENSMUST00000195974 Gm18384 processed_pseudogene Interval_134804 chr6 31665965 31666533 + 0 NA promoter-TSS (ENSMUSG00000084973.2) lincRNA-promoter-TSS (ENSMUSG00000084973.2) -29 ENSMUSG00000086804.8 ENSMUSG00000086804 ENSMUST00000210985 Gm43154 lincRNA Interval_76689 chr17 83498987 83500420 + 0 NA Intergenic Intergenic 4803 ENSMUSG00000024248.14 ENSMUSG00000024248 ENSMUST00000234258 Cox7a2l protein_coding Interval_126750 chr5 92522889 92523110 + 0 NA Intergenic Intergenic -16166 ENSMUSG00000029426.8 ENSMUSG00000029426 ENSMUST00000201253 Scarb2 protein_coding Interval_167474 chr9 69712615 69713025 + 0 NA Intergenic Intergenic 48120 ENSMUSG00000059246.4 ENSMUSG00000059246 ENSMUST00000071281 Foxb1 protein_coding Interval_171498 chr9 118841453 118841832 + 0 NA intron (ENSMUSG00000039115.13, intron 4 of 4) protein_coding-intron (ENSMUSG00000039115.13, intron 21 of 27) -3687 ENSMUSG00000066270.3 ENSMUSG00000066270 ENSMUST00000139408 Gm10157 processed_pseudogene Interval_162795 chr9 9174132 9174485 + 0 NA intron (ENSMUSG00000050730.17, intron 2 of 5) protein_coding-intron (ENSMUSG00000050730.17, intron 2 of 22) -61980 ENSMUSG00000085253.3 ENSMUSG00000085253 ENSMUST00000150263 Gm16833 antisense Interval_405 chr1 4933237 4935282 + 0 NA intron (ENSMUSG00000002459.17, intron 1 of 3) protein_coding-intron (ENSMUSG00000002459.17, intron 1 of 4) 6451 ENSMUSG00000102653.1 ENSMUSG00000102653 ENSMUST00000194114 Gm37079 TEC Interval_4266 chr1 72254267 72255966 + 0 NA TTS (ENSMUSG00000093843.1) snRNA-TTS (ENSMUSG00000093843.1) 108 ENSMUSG00000093843.1 ENSMUSG00000093843 ENSMUST00000179876 Gm25939 snRNA Interval_172293 chrX 12540908 12541299 + 0 NA Intergenic Intergenic -46698 ENSMUSG00000031007.2 ENSMUSG00000031007 ENSMUST00000033313 Atp6ap2 protein_coding Interval_104934 chr3 79128318 79129626 + 0 NA intron (ENSMUSG00000062232.14, intron 7 of 29) protein_coding-intron (ENSMUSG00000062232.14, intron 1 of 23) -67402 ENSMUSG00000064693.1 ENSMUSG00000064693 ENSMUST00000082759 Gm24150 snRNA Interval_66916 chr16 38505998 38506699 + 0 NA intron (ENSMUSG00000002846.9, intron 4 of 6) protein_coding-intron (ENSMUSG00000002846.9, intron 4 of 6) -6217 ENSMUSG00000081605.1 ENSMUSG00000081605 ENSMUST00000117656 Gm15953 processed_pseudogene Interval_107521 chr3 108283504 108284618 + 0 NA promoter-TSS (ENSMUSG00000068747.14) protein_coding-promoter-TSS (ENSMUSG00000068747.14) -21 ENSMUSG00000068747.14 ENSMUSG00000068747 ENSMUST00000129755 Sort1 protein_coding Interval_9571 chr1 159493950 159494293 + 0 NA Intergenic Intergenic -29720 ENSMUSG00000015829.13 ENSMUSG00000015829 ENSMUST00000192457 Tnr protein_coding Interval_87006 chr19 45491199 45491383 + 0 NA intron (ENSMUSG00000025217.15, intron 5 of 13) protein_coding-intron (ENSMUSG00000025217.15, intron 4 of 14) -40096 ENSMUSG00000057605.4 ENSMUSG00000057605 ENSMUST00000077435 Gm6807 processed_pseudogene Interval_53598 chr14 59732383 59732840 + 0 NA intron (ENSMUSG00000021983.16, intron 32 of 35) protein_coding-intron (ENSMUSG00000021983.16, intron 32 of 35) 90063 ENSMUSG00000114593.1 ENSMUSG00000114593 ENSMUST00000224256 Gm19716 transcribed_processed_pseudogene Interval_19422 chr10 99126780 99126977 + 0 NA promoter-TSS (ENSMUSG00000055108.6) protein_coding-promoter-TSS (ENSMUSG00000055108.6) -553 ENSMUSG00000055108.6 ENSMUSG00000055108 ENSMUST00000060761 Phxr2 protein_coding Interval_97116 chr2 131401900 131402150 + 0 NA Intergenic Intergenic 11937 ENSMUSG00000089113.1 ENSMUSG00000089113 ENSMUST00000158488 Gm22902 ribozyme Interval_55262 chr14 79767710 79771750 + 0 NA promoter-TSS (ENSMUSG00000102774.1) antisense-promoter-TSS (ENSMUSG00000102774.1) -178 ENSMUSG00000102774.1 ENSMUSG00000102774 ENSMUST00000193759 Gm9748 antisense Interval_137714 chr6 81336914 81337640 + 0 NA Intergenic Intergenic 83981 ENSMUSG00000107691.1 ENSMUSG00000107691 ENSMUST00000203247 Gm43901 processed_pseudogene Interval_33166 chr11 114872142 114873863 + 0 NA TTS (ENSMUSG00000051043.16) protein_coding-TTS (ENSMUSG00000051043.16) -17292 ENSMUSG00000034652.12 ENSMUSG00000034652 ENSMUST00000153245 Cd300a protein_coding Interval_78020 chr18 6787215 6787416 + 0 NA intron (ENSMUSG00000073639.6, intron 6 of 6) protein_coding-intron (ENSMUSG00000073639.6, intron 5 of 5) -1453 ENSMUSG00000117461.1 ENSMUSG00000117461 ENSMUST00000234748 Gm50081 sense_overlapping Interval_84352 chr19 10296973 10297458 + 0 NA intron (ENSMUSG00000035735.10, intron 1 of 19) protein_coding-intron (ENSMUSG00000035735.10, intron 1 of 19) 6289 ENSMUSG00000118330.1 ENSMUSG00000118330 ENSMUST00000237496 Gm30042 antisense Interval_106657 chr3 98194357 98194625 + 0 NA Intergenic Intergenic -3389 ENSMUSG00000106486.1 ENSMUSG00000106486 ENSMUST00000198267 Gm9771 processed_pseudogene Interval_87171 chr19 46587652 46588722 + 0 NA exon (ENSMUSG00000025036.7, exon 5 of 10) protein_coding-exon (ENSMUSG00000025036.7, exon 5 of 10) 5284 ENSMUSG00000025036.7 ENSMUSG00000025036 ENSMUST00000237001 Sfxn2 protein_coding Interval_73640 chr17 42153598 42153970 + 0 NA Intergenic Intergenic -162205 ENSMUSG00000042256.5 ENSMUSG00000042256 ENSMUST00000232968 Ptchd4 protein_coding Interval_112742 chr4 44548850 44549512 + 0 NA intron (ENSMUSG00000014030.15, intron 6 of 7) protein_coding-intron (ENSMUSG00000014030.15, intron 6 of 7) 58387 ENSMUSG00000092761.1 ENSMUSG00000092761 ENSMUST00000175020 Mir5120 miRNA Interval_3023 chr1 52288557 52289242 + 0 NA exon (ENSMUSG00000099648.1, exon 1 of 1) processed_pseudogene-exon (ENSMUSG00000099648.1, exon 1 of 1) 196 ENSMUSG00000099648.1 ENSMUSG00000099648 ENSMUST00000185256 Gm5975 processed_pseudogene Interval_23506 chr11 23018076 23018674 + 0 NA intron (ENSMUSG00000049811.17, intron 2 of 3) protein_coding-intron (ENSMUSG00000049811.17, intron 2 of 3) 4988 ENSMUSG00000049811.17 ENSMUSG00000049811 ENSMUST00000151877 Fam161a protein_coding Interval_141720 chr6 134026576 134027129 + 0 NA Intergenic Intergenic -46502 ENSMUSG00000108214.1 ENSMUSG00000108214 ENSMUST00000204995 Gm43982 TEC Interval_140769 chr6 121166120 121168012 + 0 NA Intergenic Intergenic -16832 ENSMUSG00000067825.11 ENSMUSG00000067825 ENSMUST00000125633 Pex26 protein_coding Interval_63214 chr15 99778028 99778969 + 0 NA TTS (ENSMUSG00000023022.14) protein_coding-TTS (ENSMUSG00000023022.14) 12507 ENSMUSG00000090406.1 ENSMUSG00000090406 ENSMUST00000168951 Gm17058 antisense Interval_25830 chr11 52003685 52004569 + 0 NA promoter-TSS (ENSMUSG00000020389.19) protein_coding-promoter-TSS (ENSMUSG00000020389.19) 3274 ENSMUSG00000086493.1 ENSMUSG00000086493 ENSMUST00000147412 Gm12204 antisense Interval_144202 chr7 19932275 19933978 + 0 NA Intergenic Intergenic 12397 ENSMUSG00000090075.1 ENSMUSG00000090075 ENSMUST00000162649 Gm16251 antisense Interval_25061 chr11 43577776 43579110 + 0 NA intron (ENSMUSG00000044707.7, intron 3 of 5) protein_coding-intron (ENSMUSG00000044707.7, intron 3 of 5) 2673 ENSMUSG00000085239.1 ENSMUSG00000085239 ENSMUST00000130874 Gm12150 antisense Interval_81327 chr18 58080721 58082069 + 0 NA exon (ENSMUSG00000024598.9, exon 21 of 65) protein_coding-exon (ENSMUSG00000024598.9, exon 21 of 65) 128531 ENSMUSG00000024598.9 ENSMUSG00000024598 ENSMUST00000235779 Fbn2 protein_coding Interval_114420 chr4 75875479 75875747 + 0 NA Intergenic Intergenic 21095 ENSMUSG00000084253.1 ENSMUSG00000084253 ENSMUST00000118109 Gm11256 processed_pseudogene Interval_57311 chr15 8670553 8670822 + 0 NA intron (ENSMUSG00000005360.14, intron 3 of 9) protein_coding-intron (ENSMUSG00000005360.14, intron 3 of 9) -15614 ENSMUSG00000103047.1 ENSMUSG00000103047 ENSMUST00000195237 Gm37310 TEC Interval_8746 chr1 150370927 150371233 + 0 NA intron (ENSMUSG00000006010.14, intron 12 of 13) protein_coding-intron (ENSMUSG00000006010.14, intron 11 of 12) 21668 ENSMUSG00000006010.14 ENSMUSG00000006010 ENSMUST00000140112 Odr4 protein_coding Interval_151144 chr7 118804073 118804427 + 0 NA intron (ENSMUSG00000030982.19, intron 5 of 8) protein_coding-intron (ENSMUSG00000030982.19, intron 15 of 23) 19107 ENSMUSG00000109379.1 ENSMUSG00000109379 ENSMUST00000207311 Gm44550 TEC Interval_109796 chr3 147197370 147197620 + 0 NA Intergenic Intergenic -4577 ENSMUSG00000103099.1 ENSMUSG00000103099 ENSMUST00000193340 Gm6074 processed_pseudogene Interval_55703 chr14 99141952 99142771 + 0 NA intron (ENSMUSG00000022064.10, intron 9 of 13) protein_coding-intron (ENSMUSG00000022064.10, intron 9 of 17) 30684 ENSMUSG00000115071.1 ENSMUSG00000115071 ENSMUST00000226897 Gm49026 TEC Interval_28173 chr11 73467291 73467494 + 0 NA Intergenic Intergenic -9884 ENSMUSG00000072709.3 ENSMUSG00000072709 ENSMUST00000075532 Olfr380 protein_coding Interval_29936 chr11 87869857 87871294 + 0 NA intron (ENSMUSG00000052234.2, intron 2 of 3) protein_coding-intron (ENSMUSG00000052234.2, intron 7 of 12) 1193 ENSMUSG00000052234.2 ENSMUSG00000052234 ENSMUST00000125590 Epx protein_coding Interval_62792 chr15 97021664 97023052 + 0 NA intron (ENSMUSG00000022464.14, intron 1 of 15) protein_coding-intron (ENSMUSG00000022464.14, intron 1 of 15) -2407 ENSMUSG00000022464.14 ENSMUSG00000022464 ENSMUST00000230907 Slc38a4 protein_coding Interval_40754 chr12 108178507 108180155 + 0 NA promoter-TSS (ENSMUSG00000056770.15) protein_coding-promoter-TSS (ENSMUSG00000056770.15) -16322 ENSMUSG00000056770.15 ENSMUSG00000056770 ENSMUST00000125916 Setd3 protein_coding Interval_138906 chr6 93353384 93354080 + 0 NA Intergenic Intergenic -18144 ENSMUSG00000077180.1 ENSMUSG00000077180 ENSMUST00000103992 Gm25094 snoRNA Interval_110439 chr3 158175033 158175539 + 0 NA exon (ENSMUSG00000028176.13, exon 18 of 28) protein_coding-exon (ENSMUSG00000028176.13, exon 18 of 28) -4950 ENSMUSG00000106043.1 ENSMUSG00000106043 ENSMUST00000198578 Gm42968 TEC Interval_47660 chr13 90916560 90917223 + 0 NA Intergenic Intergenic -6326 ENSMUSG00000049517.8 ENSMUSG00000049517 ENSMUST00000224430 Rps23 protein_coding Interval_14923 chr10 41170451 41171283 + 0 NA Intergenic Intergenic -32671 ENSMUSG00000111587.1 ENSMUSG00000111587 ENSMUST00000214352 Gm32338 lincRNA Interval_162959 chr9 13754252 13754703 + 0 NA intron (ENSMUSG00000031918.16, intron 1 of 3) protein_coding-intron (ENSMUSG00000031918.16, intron 1 of 14) 5158 ENSMUSG00000031918.16 ENSMUSG00000031918 ENSMUST00000146901 Mtmr2 protein_coding Interval_138469 chr6 88469916 88470343 + 0 NA intron (ENSMUSG00000030079.15, intron 2 of 4) protein_coding-intron (ENSMUSG00000030079.15, intron 2 of 10) 4402 ENSMUSG00000030079.15 ENSMUSG00000030079 ENSMUST00000129035 Ruvbl1 protein_coding Interval_18990 chr10 93603006 93603442 + 0 NA intron (ENSMUSG00000097407.1, intron 3 of 3) lincRNA-intron (ENSMUSG00000097407.1, intron 3 of 3) -13518 ENSMUSG00000020018.6 ENSMUSG00000020018 ENSMUST00000020203 Snrpf protein_coding Interval_126761 chr5 92689234 92689576 + 0 NA intron (ENSMUSG00000029381.16, intron 1 of 11) protein_coding-intron (ENSMUSG00000029381.16, intron 1 of 10) -45521 ENSMUSG00000050050.17 ENSMUSG00000050050 ENSMUST00000150359 Ccdc158 protein_coding Interval_107136 chr3 103808804 103810019 + 0 NA promoter-TSS (ENSMUSG00000027845.15) protein_coding-promoter-TSS (ENSMUSG00000027845.15) -162 ENSMUSG00000105053.1 ENSMUSG00000105053 ENSMUST00000199710 Gm43064 protein_coding Interval_56615 chr14 120868366 120868586 + 0 NA Intergenic Intergenic 41318 ENSMUSG00000115028.1 ENSMUSG00000115028 ENSMUST00000228417 Gm9391 processed_pseudogene Interval_160107 chr8 106469607 106469806 + 0 NA Intergenic Intergenic -30799 ENSMUSG00000054069.8 ENSMUSG00000054069 ENSMUST00000066875 6030452D12Rik lincRNA Interval_126958 chr5 98348615 98349074 + 0 NA exon (ENSMUSG00000104545.1, exon 1 of 1) TEC-exon (ENSMUSG00000104545.1, exon 1 of 1) 2450 ENSMUSG00000104545.1 ENSMUSG00000104545 ENSMUST00000198813 E030032P16Rik TEC Interval_32577 chr11 108783822 108784477 + 0 NA intron (ENSMUSG00000020728.17, intron 4 of 5) protein_coding-intron (ENSMUSG00000020728.17, intron 24 of 27) -36184 ENSMUSG00000085811.1 ENSMUSG00000085811 ENSMUST00000143781 Cep112it sense_intronic Interval_121317 chr4 154946107 154946942 + 0 NA Intergenic Intergenic -14447 ENSMUSG00000048001.7 ENSMUSG00000048001 ENSMUST00000151480 Hes5 protein_coding Interval_158122 chr8 78955462 78955686 + 0 NA intron (ENSMUSG00000109583.1, intron 1 of 4) lincRNA-intron (ENSMUSG00000109583.1, intron 1 of 4) 1648 ENSMUSG00000109583.1 ENSMUSG00000109583 ENSMUST00000210045 Gm39204 lincRNA Interval_159716 chr8 99002201 99002407 + 0 NA Intergenic Intergenic -9582 ENSMUSG00000089819.1 ENSMUSG00000089819 ENSMUST00000161244 Gm15679 antisense Interval_96374 chr2 122045598 122046069 + 0 NA intron (ENSMUSG00000027236.8, intron 4 of 7) protein_coding-intron (ENSMUSG00000027236.8, intron 4 of 7) 17181 ENSMUSG00000027236.8 ENSMUSG00000027236 ENSMUST00000142747 Eif3j1 protein_coding Interval_148896 chr7 89906677 89908391 + 0 NA Intergenic Intergenic -3905 ENSMUSG00000039391.11 ENSMUSG00000039391 ENSMUST00000041195 Ccdc81 protein_coding Interval_161753 chr8 122556550 122559525 + 0 NA intron (ENSMUSG00000092329.1, intron 1 of 15) protein_coding-intron (ENSMUSG00000092329.1, intron 1 of 15) -6708 ENSMUSG00000014444.17 ENSMUSG00000014444 ENSMUST00000148497 Piezo1 protein_coding Interval_119955 chr4 141100125 141100358 + 0 NA intron (ENSMUSG00000045004.3, intron 7 of 14) protein_coding-intron (ENSMUSG00000045004.3, intron 7 of 14) -3744 ENSMUSG00000045004.3 ENSMUSG00000045004 ENSMUST00000181353 Spata21 protein_coding Interval_142827 chr6 146247727 146249646 + 0 NA intron (ENSMUSG00000030287.15, intron 36 of 55) protein_coding-intron (ENSMUSG00000030287.15, intron 37 of 56) -16207 ENSMUSG00000030287.15 ENSMUSG00000030287 ENSMUST00000111673 Itpr2 protein_coding Interval_61144 chr15 79484999 79485214 + 0 NA exon (ENSMUSG00000044216.7, exon 2 of 2) protein_coding-exon (ENSMUSG00000044216.7, exon 2 of 2) -2432 ENSMUSG00000116081.1 ENSMUSG00000116081 ENSMUST00000229365 Gm49593 TEC Interval_50669 chr14 17921879 17922079 + 0 NA intron (ENSMUSG00000021779.17, intron 2 of 9) protein_coding-intron (ENSMUSG00000021779.17, intron 2 of 9) -36846 ENSMUSG00000084722.1 ENSMUSG00000084722 ENSMUST00000122773 Gm24140 misc_RNA Interval_100411 chr2 168879296 168879838 + 0 NA Intergenic Intergenic 2601 ENSMUSG00000077761.1 ENSMUSG00000077761 ENSMUST00000104573 Gm25214 snoRNA Interval_18768 chr10 90235285 90235642 + 0 NA intron (ENSMUSG00000058589.14, intron 9 of 25) protein_coding-intron (ENSMUSG00000058589.14, intron 9 of 17) -100646 ENSMUSG00000112140.1 ENSMUSG00000112140 ENSMUST00000217774 Gm5780 processed_pseudogene Interval_43238 chr13 26408361 26408616 + 0 NA Intergenic Intergenic -48462 ENSMUSG00000114660.1 ENSMUSG00000114660 ENSMUST00000223914 Gm47881 TEC Interval_78127 chr18 8870737 8871181 + 0 NA Intergenic Intergenic -57276 ENSMUSG00000103172.1 ENSMUSG00000103172 ENSMUST00000195097 Gm37148 TEC Interval_79458 chr18 32058349 32058643 + 0 NA Intergenic Intergenic -24770 ENSMUSG00000024384.4 ENSMUSG00000024384 ENSMUST00000212458 Iws1 protein_coding Interval_115287 chr4 95353973 95354598 + 0 NA Intergenic Intergenic 48505 ENSMUSG00000100129.1 ENSMUSG00000100129 ENSMUST00000187014 Gm29064 lincRNA Interval_126232 chr5 83507604 83507998 + 0 NA Intergenic Intergenic 43007 ENSMUSG00000104537.1 ENSMUSG00000104537 ENSMUST00000196348 Gm44303 miRNA Interval_158791 chr8 86593624 86594282 + 0 NA Intergenic Intergenic 6991 ENSMUSG00000106513.1 ENSMUSG00000106513 ENSMUST00000200165 Gm44348 miRNA Interval_72230 chr17 28709623 28709943 + 0 NA intron (ENSMUSG00000053436.15, intron 2 of 12) protein_coding-intron (ENSMUSG00000053436.15, intron 1 of 11) -16300 ENSMUSG00000117145.1 ENSMUSG00000117145 ENSMUST00000233003 Gm4356 protein_coding Interval_138333 chr6 87323565 87324376 + 0 NA intron (ENSMUSG00000033420.12, intron 1 of 16) protein_coding-intron (ENSMUSG00000033420.12, intron 1 of 17) -1631 ENSMUSG00000107780.1 ENSMUSG00000107780 ENSMUST00000203393 9530013L04Rik TEC Interval_69498 chr16 93883289 93884723 + 0 NA promoter-TSS (ENSMUSG00000022945.12) protein_coding-promoter-TSS (ENSMUSG00000022945.12) -4728 ENSMUSG00000116890.1 ENSMUSG00000116890 ENSMUST00000232065 Gm49617 sense_intronic Interval_48019 chr13 95291750 95292550 + 0 NA Intergenic Intergenic -34617 ENSMUSG00000041995.8 ENSMUSG00000041995 ENSMUST00000222456 Zbed3 protein_coding Interval_8363 chr1 138055787 138056337 + 0 NA Intergenic Intergenic -68286 ENSMUSG00000088564.1 ENSMUSG00000088564 ENSMUST00000157939 Gm23782 rRNA Interval_70498 chr17 11014285 11014656 + 0 NA intron (ENSMUSG00000023826.16, intron 1 of 10) protein_coding-intron (ENSMUSG00000023826.16, intron 1 of 6) 74998 ENSMUSG00000100402.1 ENSMUSG00000100402 ENSMUST00000190466 Gm28505 antisense Interval_23559 chr11 23359063 23359973 + 0 NA intron (ENSMUSG00000056342.16, intron 10 of 79) protein_coding-intron (ENSMUSG00000056342.16, intron 10 of 79) 52623 ENSMUSG00000056342.16 ENSMUSG00000056342 ENSMUST00000125701 Usp34 protein_coding Interval_4200 chr1 71586176 71587448 + 0 NA TTS (ENSMUSG00000026193.15) protein_coding-TTS (ENSMUSG00000026193.15) 29633 ENSMUSG00000026192.13 ENSMUSG00000026192 ENSMUST00000154855 Atic protein_coding Interval_79152 chr18 25065129 25065756 + 0 NA intron (ENSMUSG00000034295.10, intron 13 of 24) protein_coding-intron (ENSMUSG00000034295.10, intron 15 of 26) 103252 ENSMUSG00000024269.11 ENSMUSG00000024269 ENSMUST00000115817 Tpgs2 protein_coding Interval_74434 chr17 50441223 50442864 + 0 NA Intergenic Intergenic 102791 ENSMUSG00000117222.1 ENSMUSG00000117222 ENSMUST00000233175 Gm49906 lincRNA Interval_50942 chr14 20960857 20961362 + 0 NA intron (ENSMUSG00000021823.10, intron 1 of 7) protein_coding-intron (ENSMUSG00000021823.10, intron 1 of 20) 31711 ENSMUSG00000021823.10 ENSMUSG00000021823 ENSMUST00000224380 Vcl protein_coding Interval_9319 chr1 156204326 156205515 + 0 NA exon (ENSMUSG00000015484.3, exon 1 of 5) protein_coding-exon (ENSMUSG00000015484.3, exon 1 of 5) 106 ENSMUSG00000015484.3 ENSMUSG00000015484 ENSMUST00000015628 Fam163a protein_coding Interval_17648 chr10 78463191 78465474 + 0 NA intron (ENSMUSG00000032788.15, intron 1 of 10) protein_coding-intron (ENSMUSG00000032788.15, intron 1 of 10) 6924 ENSMUSG00000112623.1 ENSMUSG00000112623 ENSMUST00000217736 4933436P19Rik TEC Interval_71924 chr17 27032565 27033311 + 0 NA promoter-TSS (ENSMUSG00000048731.15) protein_coding-promoter-TSS (ENSMUSG00000048731.15) 3526 ENSMUSG00000048731.15 ENSMUSG00000048731 ENSMUST00000235543 Ggnbp1 protein_coding Interval_69282 chr16 91890979 91891897 + 0 NA intron (ENSMUSG00000022957.20, intron 3 of 3) protein_coding-intron (ENSMUSG00000022957.20, intron 31 of 39) -12625 ENSMUSG00000022957.20 ENSMUSG00000022957 ENSMUST00000137575 Itsn1 protein_coding Interval_18727 chr10 89721508 89722567 + 0 NA intron (ENSMUSG00000019948.4, intron 8 of 10) protein_coding-intron (ENSMUSG00000019948.4, intron 8 of 10) 10236 ENSMUSG00000019948.4 ENSMUSG00000019948 ENSMUST00000218568 Actr6 protein_coding Interval_27446 chr11 67858228 67858467 + 0 NA intron (ENSMUSG00000020905.11, intron 2 of 2) protein_coding-intron (ENSMUSG00000020905.11, intron 14 of 14) 60060 ENSMUSG00000033044.12 ENSMUSG00000033044 ENSMUST00000168612 Dhrs7c protein_coding Interval_144035 chr7 19088782 19089022 + 0 NA TTS (ENSMUSG00000030409.16) protein_coding-TTS (ENSMUSG00000030409.16) 2074 ENSMUSG00000092659.1 ENSMUSG00000092659 ENSMUST00000174918 Mir3100 miRNA Interval_145519 chr7 35341288 35341593 + 0 NA intron (ENSMUSG00000030494.13, intron 1 of 15) protein_coding-intron (ENSMUSG00000030494.13, intron 1 of 14) -41125 ENSMUSG00000030494.13 ENSMUSG00000030494 ENSMUST00000187997 Rhpn2 protein_coding Interval_134368 chr6 26949506 26949712 + 0 NA Intergenic Intergenic 119192 ENSMUSG00000106742.1 ENSMUSG00000106742 ENSMUST00000201073 Gm42474 processed_pseudogene Interval_20564 chr10 119065016 119066231 + 0 NA Intergenic Intergenic -15124 ENSMUSG00000112778.1 ENSMUSG00000112778 ENSMUST00000220074 Gm33677 lincRNA Interval_151057 chr7 118225446 118226288 + 0 NA intron (ENSMUSG00000030655.15, intron 1 of 9) protein_coding-intron (ENSMUSG00000030655.15, intron 1 of 62) 5490 ENSMUSG00000109045.1 ENSMUSG00000109045 ENSMUST00000207096 Gm45084 TEC Interval_21434 chr10 128583702 128584881 + 0 NA TTS (ENSMUSG00000098592.1) miRNA-TTS (ENSMUSG00000098592.1) 206 ENSMUSG00000098592.1 ENSMUSG00000098592 ENSMUST00000184111 Mir6917 miRNA Interval_84766 chr19 16394591 16395300 + 0 NA Intergenic Intergenic -18549 ENSMUSG00000118142.1 ENSMUSG00000118142 ENSMUST00000237669 Gm19312 processed_pseudogene Interval_146702 chr7 49553405 49554003 + 0 NA promoter-TSS (ENSMUSG00000052512.17) protein_coding-promoter-TSS (ENSMUSG00000052512.17) 83145 ENSMUSG00000030507.6 ENSMUSG00000030507 ENSMUST00000032717 Dbx1 protein_coding Interval_23418 chr11 22500977 22501545 + 0 NA Intergenic Intergenic -10827 ENSMUSG00000049904.7 ENSMUSG00000049904 ENSMUST00000059319 Tmem17 protein_coding Interval_67273 chr16 45244183 45244485 + 0 NA intron (ENSMUSG00000052013.15, intron 4 of 5) protein_coding-intron (ENSMUSG00000052013.15, intron 4 of 5) -6037 ENSMUSG00000052013.15 ENSMUSG00000052013 ENSMUST00000231703 Btla protein_coding Interval_64057 chr16 6839650 6840245 + 0 NA intron (ENSMUSG00000008658.16, intron 4 of 11) protein_coding-intron (ENSMUSG00000008658.16, intron 3 of 14) -353800 ENSMUSG00000008658.16 ENSMUSG00000008658 ENSMUST00000231031 Rbfox1 protein_coding Interval_140525 chr6 119310151 119310650 + 0 NA intron (ENSMUSG00000041460.16, intron 25 of 37) protein_coding-intron (ENSMUSG00000041460.16, intron 25 of 37) 18804 ENSMUSG00000055003.14 ENSMUSG00000055003 ENSMUST00000124192 Lrtm2 protein_coding Interval_159773 chr8 102740808 102741065 + 0 NA intron (ENSMUSG00000031673.6, intron 1 of 6) protein_coding-intron (ENSMUSG00000031673.6, intron 1 of 12) -8452 ENSMUSG00000078006.1 ENSMUSG00000078006 ENSMUST00000104813 Gm26301 miRNA Interval_45010 chr13 51407928 51409222 + 0 NA promoter-TSS (ENSMUSG00000067586.4) protein_coding-promoter-TSS (ENSMUSG00000067586.4) -64 ENSMUSG00000067586.4 ENSMUSG00000067586 ENSMUST00000087978 S1pr3 protein_coding Interval_79402 chr18 31685913 31686757 + 0 NA intron (ENSMUSG00000024260.14, intron 14 of 20) protein_coding-intron (ENSMUSG00000024260.14, intron 14 of 20) 51964 ENSMUSG00000024260.14 ENSMUSG00000024260 ENSMUST00000234772 Sap130 protein_coding Interval_20002 chr10 111890475 111890806 + 0 NA TTS (ENSMUSG00000112628.1) processed_pseudogene-TTS (ENSMUSG00000112628.1) 1626 ENSMUSG00000112628.1 ENSMUSG00000112628 ENSMUST00000217819 Gm47880 processed_pseudogene Interval_32711 chr11 109900570 109901503 + 0 NA Intergenic Intergenic -35280 ENSMUSG00000085629.1 ENSMUSG00000085629 ENSMUST00000149226 Gm11697 antisense Interval_43016 chr13 23156609 23156920 + 0 NA Intergenic Intergenic -2548 ENSMUSG00000061376.2 ENSMUSG00000061376 ENSMUST00000076180 Vmn1r219 protein_coding Interval_9373 chr1 156640465 156641472 + 0 NA intron (ENSMUSG00000026596.13, intron 11 of 12) protein_coding-intron (ENSMUSG00000026596.13, intron 11 of 11) 25045 ENSMUSG00000026596.13 ENSMUSG00000026596 ENSMUST00000190749 Abl2 protein_coding Interval_103762 chr3 52416394 52416859 + 0 NA Intergenic Intergenic -8782 ENSMUSG00000103454.1 ENSMUSG00000103454 ENSMUST00000194115 Gm38098 processed_pseudogene Interval_41051 chr12 110821759 110822608 + 0 NA intron (ENSMUSG00000056458.16, intron 1 of 6) protein_coding-intron (ENSMUSG00000056458.16, intron 1 of 5) 18744 ENSMUSG00000056458.16 ENSMUSG00000056458 ENSMUST00000177224 Mok protein_coding Interval_91549 chr2 42902421 42902796 + 0 NA Intergenic Intergenic 93573 ENSMUSG00000105844.1 ENSMUSG00000105844 ENSMUST00000198309 Gm24350 snoRNA Interval_153060 chr7 141117565 141118122 + 0 NA promoter-TSS (ENSMUSG00000054662.8) protein_coding-promoter-TSS (ENSMUSG00000054662.8) -9169 ENSMUSG00000054662.8 ENSMUSG00000054662 ENSMUST00000210763 Ano9 protein_coding Interval_49471 chr13 112278370 112279409 + 0 NA Intergenic Intergenic -9562 ENSMUSG00000049985.15 ENSMUSG00000049985 ENSMUST00000223871 Ankrd55 protein_coding Interval_77547 chr17 91363967 91364268 + 0 NA Intergenic Intergenic -16545 ENSMUSG00000117471.1 ENSMUSG00000117471 ENSMUST00000233999 Gm49988 processed_pseudogene Interval_147053 chr7 60163283 60163782 + 0 NA Intergenic Intergenic 7923 ENSMUSG00000047370.5 ENSMUSG00000047370 ENSMUST00000057611 Gm7367 processed_pseudogene Interval_20235 chr10 116330355 116331533 + 0 NA intron (ENSMUSG00000020154.10, intron 10 of 33) protein_coding-intron (ENSMUSG00000020154.10, intron 8 of 31) -9639 ENSMUSG00000065086.1 ENSMUSG00000065086 ENSMUST00000083152 Gm26495 snoRNA Interval_166162 chr9 57179165 57179664 + 0 NA intron (ENSMUSG00000100282.1, intron 2 of 5) lincRNA-intron (ENSMUSG00000100282.1, intron 2 of 5) 4139 ENSMUSG00000100282.1 ENSMUSG00000100282 ENSMUST00000185243 1700041C23Rik lincRNA Interval_99184 chr2 157856466 157856930 + 0 NA intron (ENSMUSG00000027649.15, intron 11 of 15) protein_coding-intron (ENSMUSG00000027649.15, intron 11 of 15) -44838 ENSMUSG00000062846.7 ENSMUSG00000062846 ENSMUST00000121302 Gm14176 processed_pseudogene Interval_172872 chrX 52612862 52614565 + 0 NA exon (ENSMUSG00000055653.13, exon 1 of 8) protein_coding-exon (ENSMUSG00000055653.13, exon 1 of 8) 237 ENSMUSG00000055653.13 ENSMUSG00000055653 ENSMUST00000114857 Gpc3 protein_coding Interval_123046 chr5 29198913 29199516 + 0 NA TTS (ENSMUSG00000029130.12) protein_coding-TTS (ENSMUSG00000029130.12) 2627 ENSMUSG00000029130.12 ENSMUSG00000029130 ENSMUST00000163050 Rnf32 protein_coding Interval_138966 chr6 93873283 93874327 + 0 NA intron (ENSMUSG00000045095.16, intron 2 of 24) protein_coding-intron (ENSMUSG00000045095.16, intron 2 of 21) -16810 ENSMUSG00000089069.1 ENSMUSG00000089069 ENSMUST00000158444 Gm22840 snoRNA Interval_63161 chr15 99456779 99458358 + 0 NA TTS (ENSMUSG00000116249.1) processed_transcript-TTS (ENSMUSG00000116249.1) 144 ENSMUSG00000023009.14 ENSMUSG00000023009 ENSMUST00000161948 Nckap5l protein_coding Interval_21725 chr11 3963210 3964490 + 0 NA promoter-TSS (ENSMUSG00000020430.12) protein_coding-promoter-TSS (ENSMUSG00000020430.12) -199 ENSMUSG00000020430.12 ENSMUSG00000020430 ENSMUST00000137544 Pes1 protein_coding Interval_53066 chr14 54152632 54153165 + 0 NA Intergenic Intergenic -2107 ENSMUSG00000090574.1 ENSMUSG00000090574 ENSMUST00000165025 Traj61 TR_J_pseudogene Interval_89237 chr2 18285803 18286088 + 0 NA intron (ENSMUSG00000026740.12, intron 1 of 4) protein_coding-intron (ENSMUSG00000026740.12, intron 6 of 10) -36102 ENSMUSG00000083070.2 ENSMUSG00000083070 ENSMUST00000120519 Gm13350 processed_pseudogene Interval_79814 chr18 35264649 35265806 + 0 NA intron (ENSMUSG00000117876.1, intron 1 of 2) antisense-intron (ENSMUSG00000117876.1, intron 1 of 2) 1198 ENSMUSG00000117876.1 ENSMUSG00000117876 ENSMUST00000236119 Gm50146 antisense Interval_144094 chr7 19395551 19395764 + 0 NA TTS (ENSMUSG00000030400.17) protein_coding-TTS (ENSMUSG00000030400.17) 325 ENSMUSG00000040714.14 ENSMUSG00000040714 ENSMUST00000125246 Klc3 protein_coding Interval_88384 chr2 4621145 4621530 + 0 NA TTS (ENSMUSG00000039449.14) protein_coding-TTS (ENSMUSG00000039449.14) 30744 ENSMUSG00000039449.14 ENSMUSG00000039449 ENSMUST00000144650 Prpf18 protein_coding Interval_5670 chr1 90775566 90776138 + 0 NA exon (ENSMUSG00000048126.16, exon 40 of 44) protein_coding-exon (ENSMUSG00000048126.16, exon 40 of 44) 63281 ENSMUSG00000103061.1 ENSMUSG00000103061 ENSMUST00000193688 Gm36970 TEC Interval_10561 chr1 171886475 171887700 + 0 NA TTS (ENSMUSG00000038147.13) protein_coding-TTS (ENSMUSG00000038147.13) -8577 ENSMUSG00000073492.2 ENSMUSG00000073492 ENSMUST00000097466 Gm10521 protein_coding Interval_14820 chr10 40285949 40286533 + 0 NA Intergenic Intergenic -4188 ENSMUSG00000111213.1 ENSMUSG00000111213 ENSMUST00000213723 Gm47867 processed_pseudogene Interval_133078 chr5 149688886 149689097 + 0 NA intron (ENSMUSG00000051950.10, intron 1 of 14) protein_coding-intron (ENSMUSG00000051950.10, intron 1 of 14) -27768 ENSMUSG00000080002.2 ENSMUSG00000080002 ENSMUST00000116118 Gm5566 processed_pseudogene Interval_28669 chr11 77666861 77667452 + 0 NA Intergenic Intergenic -8449 ENSMUSG00000077442.1 ENSMUSG00000077442 ENSMUST00000104254 Gm23132 snoRNA Interval_78495 chr18 13701086 13702322 + 0 NA intron (ENSMUSG00000024420.9, intron 4 of 5) protein_coding-intron (ENSMUSG00000024420.9, intron 7 of 7) -100304 ENSMUSG00000117608.1 ENSMUSG00000117608 ENSMUST00000234112 AC103362.1 lincRNA Interval_91325 chr2 37782018 37782265 + 0 NA intron (ENSMUSG00000035403.10, intron 1 of 12) protein_coding-intron (ENSMUSG00000035403.10, intron 1 of 12) -9030 ENSMUSG00000035403.10 ENSMUSG00000035403 ENSMUST00000137693 Crb2 protein_coding Interval_74260 chr17 47767364 47769294 + 0 NA promoter-TSS (ENSMUSG00000023990.18) protein_coding-promoter-TSS (ENSMUSG00000023990.18) -19581 ENSMUSG00000023990.18 ENSMUSG00000023990 ENSMUST00000140715 Tfeb protein_coding Interval_29794 chr11 86855652 86857021 + 0 NA Intergenic Intergenic -55248 ENSMUSG00000018425.18 ENSMUSG00000018425 ENSMUST00000131798 Dhx40 protein_coding Interval_3681 chr1 60778260 60779403 + 0 NA promoter-TSS (ENSMUSG00000085965.1) lincRNA-promoter-TSS (ENSMUSG00000085965.1) -12 ENSMUSG00000085965.1 ENSMUSG00000085965 ENSMUST00000130082 2310016D23Rik lincRNA Interval_171683 chr9 120131973 120135640 + 0 NA TTS (ENSMUSG00000111028.1) lincRNA-TTS (ENSMUSG00000111028.1) 1209 ENSMUSG00000111028.1 ENSMUSG00000111028 ENSMUST00000216043 Gm5922 lincRNA Interval_112410 chr4 41090800 41092127 + 0 NA Intergenic Intergenic 2985 ENSMUSG00000028435.8 ENSMUSG00000028435 ENSMUST00000154722 Aqp3 protein_coding Interval_72117 chr17 28137770 28139215 + 0 NA Intergenic Intergenic 1614 ENSMUSG00000117189.1 ENSMUSG00000117189 ENSMUST00000232878 Gm49897 TEC Interval_149089 chr7 93067447 93069512 + 0 NA intron (ENSMUSG00000054061.8, intron 1 of 1) antisense-intron (ENSMUSG00000054061.8, intron 1 of 1) -11386 ENSMUSG00000051515.9 ENSMUSG00000051515 ENSMUST00000051179 Fam181b protein_coding Interval_60926 chr15 77887959 77889176 + 0 NA Intergenic Intergenic 39168 ENSMUSG00000005354.16 ENSMUSG00000005354 ENSMUST00000100486 Txn2 protein_coding Interval_145999 chr7 42995445 42995686 + 0 NA Intergenic Intergenic -23200 ENSMUSG00000091528.9 ENSMUSG00000091528 ENSMUST00000166914 Vmn2r126 protein_coding Interval_72859 chr17 32727566 32727799 + 0 NA Intergenic Intergenic -3328 ENSMUSG00000117651.1 ENSMUSG00000117651 ENSMUST00000233998 Gm6452 processed_pseudogene Interval_11385 chr1 181445800 181446293 + 0 NA intron (ENSMUSG00000026514.14, intron 3 of 5) protein_coding-intron (ENSMUSG00000026514.14, intron 3 of 5) -13646 ENSMUSG00000089927.1 ENSMUSG00000089927 ENSMUST00000160086 Gm16539 unprocessed_pseudogene Interval_147372 chr7 66249733 66250732 + 0 NA intron (ENSMUSG00000015133.17, intron 2 of 2) protein_coding-intron (ENSMUSG00000015133.17, intron 2 of 2) 12238 ENSMUSG00000015133.17 ENSMUSG00000015133 ENSMUST00000154893 Lrrk1 protein_coding Interval_109494 chr3 142929825 142930664 + 0 NA Intergenic Intergenic 32169 ENSMUSG00000105671.1 ENSMUSG00000105671 ENSMUST00000197517 Gm31306 transcribed_processed_pseudogene Interval_4022 chr1 66674532 66675095 + 0 NA TTS (ENSMUSG00000055567.18) protein_coding-TTS (ENSMUSG00000055567.18) 17543 ENSMUSG00000103375.1 ENSMUSG00000103375 ENSMUST00000192513 Gm37181 TEC Interval_61581 chr15 82658943 82659243 + 0 NA intron (ENSMUSG00000116130.1, intron 1 of 1) antisense-intron (ENSMUSG00000116130.1, intron 1 of 1) -4382 ENSMUSG00000115908.1 ENSMUSG00000115908 ENSMUST00000230415 Cyp2d35-ps unprocessed_pseudogene Interval_90457 chr2 30587128 30587849 + 0 NA Intergenic Intergenic -17729 ENSMUSG00000047363.4 ENSMUSG00000047363 ENSMUST00000129719 Cstad protein_coding Interval_9644 chr1 160714378 160714575 + 0 NA intron (ENSMUSG00000026721.16, intron 8 of 12) protein_coding-intron (ENSMUSG00000026721.16, intron 7 of 20) 12205 ENSMUSG00000103200.1 ENSMUSG00000103200 ENSMUST00000193191 Gm37328 sense_intronic Interval_82352 chr18 71906676 71907734 + 0 NA intron (ENSMUSG00000060534.16, intron 2 of 28) protein_coding-intron (ENSMUSG00000060534.16, intron 2 of 28) 443836 ENSMUSG00000060534.16 ENSMUSG00000060534 ENSMUST00000126030 Dcc protein_coding Interval_135888 chr6 48437952 48439306 + 0 NA TTS (ENSMUSG00000068551.12) protein_coding-TTS (ENSMUSG00000068551.12) 6729 ENSMUSG00000068551.12 ENSMUSG00000068551 ENSMUST00000140198 Zfp467 protein_coding Interval_172301 chrX 12651734 12652830 + 0 NA promoter-TSS (ENSMUSG00000079871.4) processed_pseudogene-promoter-TSS (ENSMUSG00000079871.4) -21 ENSMUSG00000079871.4 ENSMUSG00000079871 ENSMUST00000115987 Gm4984 processed_pseudogene Interval_150337 chr7 109702659 109704311 + 0 NA promoter-TSS (ENSMUSG00000031023.5) protein_coding-promoter-TSS (ENSMUSG00000031023.5) 3960 ENSMUSG00000109499.1 ENSMUSG00000109499 ENSMUST00000207292 Gm44864 antisense Interval_159280 chr8 92742248 92743915 + 0 NA Intergenic Intergenic -26106 ENSMUSG00000078967.5 ENSMUSG00000078967 ENSMUST00000181181 Gapdh-ps16 processed_pseudogene Interval_86901 chr19 44724123 44724390 + 0 NA Intergenic Intergenic -15623 ENSMUSG00000117823.1 ENSMUSG00000117823 ENSMUST00000236025 Gm35610 lincRNA Interval_55980 chr14 103608916 103609152 + 0 NA intron (ENSMUSG00000022123.9, intron 28 of 29) protein_coding-intron (ENSMUSG00000022123.9, intron 29 of 30) 41523 ENSMUSG00000093192.1 ENSMUSG00000093192 ENSMUST00000175451 Gm22877 miRNA Interval_173731 chrX 103251696 103253273 + 0 NA intron (ENSMUSG00000031325.15, intron 1 of 3) transcribed_unitary_pseudogene-intron (ENSMUSG00000031325.15, intron 2 of 5) 16359 ENSMUSG00000080886.1 ENSMUSG00000080886 ENSMUST00000121978 Gm14847 processed_pseudogene Interval_156666 chr8 56614979 56615497 + 0 NA Intergenic Intergenic 27318 ENSMUSG00000038206.13 ENSMUSG00000038206 ENSMUST00000211294 Fbxo8 protein_coding Interval_143469 chr7 7080550 7081608 + 0 NA Intergenic Intergenic 16949 ENSMUSG00000109488.1 ENSMUSG00000109488 ENSMUST00000207902 Gm6828 processed_pseudogene Interval_113090 chr4 48042693 48043656 + 0 NA Intergenic Intergenic -2057 ENSMUSG00000028341.9 ENSMUSG00000028341 ENSMUST00000133539 Nr4a3 protein_coding Interval_51311 chr14 26313849 26314330 + 0 NA TTS (ENSMUSG00000114753.1) lincRNA-TTS (ENSMUSG00000114753.1) 10865 ENSMUSG00000114753.1 ENSMUSG00000114753 ENSMUST00000225697 Gm34059 lincRNA Interval_10050 chr1 165346406 165346619 + 0 NA intron (ENSMUSG00000026571.12, intron 3 of 6) protein_coding-intron (ENSMUSG00000026571.12, intron 14 of 18) -33007 ENSMUSG00000104427.1 ENSMUSG00000104427 ENSMUST00000193181 Gm38368 TEC Interval_142104 chr6 137161608 137161910 + 0 NA intron (ENSMUSG00000030222.13, intron 2 of 2) protein_coding-intron (ENSMUSG00000030222.13, intron 2 of 4) -14830 ENSMUSG00000107567.1 ENSMUSG00000107567 ENSMUST00000203679 4930480K02Rik TEC Interval_71692 chr17 25471713 25472288 + 0 NA exon (ENSMUSG00000024175.2, exon 1 of 6) protein_coding-exon (ENSMUSG00000024175.2, exon 1 of 6) 403 ENSMUSG00000024175.2 ENSMUSG00000024175 ENSMUST00000234436 Tekt4 protein_coding Interval_170254 chr9 106482727 106483843 + 0 NA promoter-TSS (ENSMUSG00000041506.15) protein_coding-promoter-TSS (ENSMUSG00000041506.15) 5560 ENSMUSG00000041506.15 ENSMUSG00000041506 ENSMUST00000131618 Rrp9 protein_coding Interval_89422 chr2 20589395 20590770 + 0 NA intron (ENSMUSG00000036617.17, intron 1 of 2) protein_coding-intron (ENSMUSG00000036617.17, intron 3 of 18) 30278 ENSMUSG00000098575.1 ENSMUSG00000098575 ENSMUST00000183963 Gm27446 misc_RNA Interval_146961 chr7 56291203 56293061 + 0 NA intron (ENSMUSG00000030450.11, intron 6 of 22) protein_coding-intron (ENSMUSG00000030450.11, intron 6 of 23) -48982 ENSMUSG00000108773.1 ENSMUSG00000108773 ENSMUST00000206278 Gm44506 antisense Interval_141449 chr6 128342445 128342946 + 0 NA exon (ENSMUSG00000001521.12, exon 2 of 2) protein_coding-exon (ENSMUSG00000001521.12, exon 2 of 2) 2280 ENSMUSG00000001521.12 ENSMUSG00000001521 ENSMUST00000157005 Tulp3 protein_coding Interval_68837 chr16 87487267 87487932 + 0 NA exon (ENSMUSG00000025613.13, exon 8 of 15) protein_coding-exon (ENSMUSG00000025613.13, exon 8 of 15) -1529 ENSMUSG00000025613.13 ENSMUSG00000025613 ENSMUST00000176750 Cct8 protein_coding Interval_56889 chr14 122871996 122872533 + 0 NA intron (ENSMUSG00000041625.15, intron 3 of 3) protein_coding-intron (ENSMUSG00000041650.15, intron 21 of 23) -40811 ENSMUSG00000075463.3 ENSMUSG00000075463 ENSMUST00000162218 4930594M22Rik processed_transcript Interval_118876 chr4 134205719 134206731 + 0 NA Intergenic Intergenic -3221 ENSMUSG00000073747.2 ENSMUSG00000073747 ENSMUST00000097849 Zpld2 protein_coding Interval_88602 chr2 6540811 6541318 + 0 NA TTS (ENSMUSG00000002107.18) protein_coding-TTS (ENSMUSG00000002107.18) 61374 ENSMUSG00000102599.1 ENSMUSG00000102599 ENSMUST00000194293 Gm38386 TEC Interval_92876 chr2 67576689 67576861 + 0 NA intron (ENSMUSG00000034780.6, intron 1 of 2) protein_coding-intron (ENSMUSG00000034780.6, intron 1 of 2) 10904 ENSMUSG00000034780.6 ENSMUSG00000034780 ENSMUST00000112346 B3galt1 protein_coding Interval_148109 chr7 79282931 79283851 + 0 NA intron (ENSMUSG00000039202.12, intron 1 of 5) protein_coding-intron (ENSMUSG00000039202.12, intron 1 of 10) 5624 ENSMUSG00000108521.1 ENSMUSG00000108521 ENSMUST00000205859 Gm44639 TEC Interval_15197 chr10 43286544 43286734 + 0 NA intron (ENSMUSG00000038240.13, intron 1 of 7) protein_coding-intron (ENSMUSG00000038240.13, intron 1 of 7) -32721 ENSMUSG00000089673.1 ENSMUSG00000089673 ENSMUST00000159442 Gm16546 processed_pseudogene Interval_19641 chr10 106702305 106702525 + 0 NA intron (ENSMUSG00000053825.15, intron 3 of 31) protein_coding-intron (ENSMUSG00000053825.15, intron 3 of 31) -101355 ENSMUSG00000112201.1 ENSMUSG00000112201 ENSMUST00000219229 4930532I03Rik antisense Interval_120804 chr4 150741064 150741419 + 0 NA Intergenic Intergenic -62449 ENSMUSG00000085869.1 ENSMUSG00000085869 ENSMUST00000149065 Gm16079 lincRNA Interval_163312 chr9 20792742 20794176 + 0 NA intron (ENSMUSG00000004098.7, intron 30 of 41) protein_coding-intron (ENSMUSG00000004098.7, intron 30 of 66) -13575 ENSMUSG00000087728.1 ENSMUSG00000087728 ENSMUST00000157103 Gm26274 misc_RNA Interval_64597 chr16 13581011 13581248 + 0 NA intron (ENSMUSG00000022685.9, intron 22 of 23) protein_coding-intron (ENSMUSG00000022685.9, intron 21 of 23) -49578 ENSMUSG00000077488.1 ENSMUSG00000077488 ENSMUST00000104300 Gm25276 snoRNA Interval_171010 chr9 113706679 113706880 + 0 NA intron (ENSMUSG00000032504.15, intron 1 of 17) protein_coding-intron (ENSMUSG00000032504.15, intron 1 of 17) -9202 ENSMUSG00000032504.15 ENSMUSG00000032504 ENSMUST00000156425 Pdcd6ip protein_coding Interval_56569 chr14 120394381 120395032 + 0 NA intron (ENSMUSG00000022139.17, intron 3 of 5) protein_coding-intron (ENSMUSG00000022139.17, intron 5 of 8) -5721 ENSMUSG00000097903.2 ENSMUSG00000097903 ENSMUST00000181685 Gm26679 antisense Interval_151554 chr7 123521891 123522377 + 0 NA Intergenic Intergenic -41205 ENSMUSG00000030757.13 ENSMUSG00000030757 ENSMUST00000128217 Zkscan2 protein_coding Interval_18426 chr10 85786052 85786567 + 0 NA promoter-TSS (ENSMUSG00000111884.1) processed_pseudogene-promoter-TSS (ENSMUSG00000111884.1) -147 ENSMUSG00000111884.1 ENSMUSG00000111884 ENSMUST00000218279 Gm19612 processed_pseudogene Interval_168828 chr9 87708069 87709273 + 0 NA intron (ENSMUSG00000032419.8, intron 6 of 7) protein_coding-intron (ENSMUSG00000032419.8, intron 6 of 7) -20614 ENSMUSG00000103710.1 ENSMUSG00000103710 ENSMUST00000192660 D030062O11Rik TEC Interval_153663 chr8 4369977 4370788 + 0 NA intron (ENSMUSG00000109356.1, intron 7 of 7) unprocessed_pseudogene-intron (ENSMUSG00000109356.1, intron 7 of 7) -7728 ENSMUSG00000108818.1 ENSMUSG00000108818 ENSMUST00000208836 Gm44869 processed_pseudogene Interval_66064 chr16 31364526 31364783 + 0 NA Intergenic Intergenic 14479 ENSMUSG00000101234.1 ENSMUSG00000101234 ENSMUST00000190494 1700007E05Rik transcribed_processed_pseudogene Interval_54895 chr14 76081175 76082134 + 0 NA Intergenic Intergenic 29106 ENSMUSG00000022008.4 ENSMUSG00000022008 ENSMUST00000022585 Gpalpp1 protein_coding Interval_42519 chr13 14416391 14417367 + 0 NA intron (ENSMUSG00000021301.9, intron 1 of 2) protein_coding-intron (ENSMUSG00000021301.9, intron 2 of 28) -37306 ENSMUSG00000113981.1 ENSMUSG00000113981 ENSMUST00000222578 Gm47011 TEC Interval_159546 chr8 95369320 95370588 + 0 NA promoter-TSS (ENSMUSG00000031790.8) protein_coding-promoter-TSS (ENSMUSG00000031790.8) 83 ENSMUSG00000031790.8 ENSMUSG00000031790 ENSMUST00000212235 Mmp15 protein_coding Interval_109519 chr3 143630993 143631523 + 0 NA Intergenic Intergenic -13632 ENSMUSG00000103816.1 ENSMUSG00000103816 ENSMUST00000192421 Gm38006 TEC Interval_140139 chr6 114738042 114738951 + 0 NA promoter-TSS (ENSMUSG00000107411.1) processed_pseudogene-promoter-TSS (ENSMUSG00000107411.1) -38 ENSMUSG00000107411.1 ENSMUSG00000107411 ENSMUST00000203280 Gm19040 processed_pseudogene Interval_89639 chr2 23720762 23721304 + 0 NA Intergenic Intergenic 40815 ENSMUSG00000083729.1 ENSMUSG00000083729 ENSMUST00000121498 Sh3d2c-ps1 processed_pseudogene Interval_7524 chr1 131990535 131991443 + 0 NA intron (ENSMUSG00000100037.1, intron 2 of 2) processed_transcript-intron (ENSMUSG00000100037.1, intron 2 of 2) 14270 ENSMUSG00000026435.15 ENSMUSG00000026435 ENSMUST00000185387 Slc45a3 protein_coding Interval_35104 chr12 17337701 17338447 + 0 NA Intergenic Intergenic 10299 ENSMUSG00000114024.1 ENSMUSG00000114024 ENSMUST00000221894 Gm46336 bidirectional_promoter_lncRNA Interval_21859 chr11 4793023 4793238 + 0 NA intron (ENSMUSG00000009073.16, intron 8 of 8) protein_coding-intron (ENSMUSG00000009073.16, intron 10 of 16) -46352 ENSMUSG00000009075.2 ENSMUSG00000009075 ENSMUST00000009219 Cabp7 protein_coding Interval_167086 chr9 65168637 65169514 + 0 NA intron (ENSMUSG00000032394.6, intron 2 of 13) protein_coding-intron (ENSMUSG00000032394.6, intron 2 of 13) -26278 ENSMUSG00000032392.11 ENSMUSG00000032392 ENSMUST00000213766 Parp16 protein_coding Interval_97786 chr2 144053984 144054473 + 0 NA intron (ENSMUSG00000037307.11, intron 1 of 2) protein_coding-intron (ENSMUSG00000037307.11, intron 1 of 3) 14555 ENSMUSG00000086384.1 ENSMUSG00000086384 ENSMUST00000145504 Banf2os antisense Interval_760 chr1 10759406 10760400 + 0 NA Intergenic Intergenic 24474 ENSMUSG00000103448.1 ENSMUSG00000103448 ENSMUST00000192705 Gm37133 TEC Interval_144067 chr7 19279140 19280016 + 0 NA promoter-TSS (ENSMUSG00000030402.5) protein_coding-promoter-TSS (ENSMUSG00000030402.5) 23 ENSMUSG00000030402.5 ENSMUSG00000030402 ENSMUST00000206782 Ppm1n protein_coding Interval_143168 chr7 4119211 4120076 + 0 NA promoter-TSS (ENSMUSG00000030428.16) protein_coding-promoter-TSS (ENSMUSG00000030428.16) 55 ENSMUSG00000030428.16 ENSMUSG00000030428 ENSMUST00000140637 Ttyh1 protein_coding Interval_106113 chr3 93297279 93297519 + 0 NA Intergenic Intergenic -7616 ENSMUSG00000102485.1 ENSMUSG00000102485 ENSMUST00000195596 Gm37922 processed_pseudogene Interval_1958 chr1 34902478 34902686 + 0 NA Intergenic Intergenic 24926 ENSMUSG00000026123.11 ENSMUSG00000026123 ENSMUST00000191722 Plekhb2 protein_coding Interval_113044 chr4 47168005 47168615 + 0 NA Intergenic Intergenic -3359 ENSMUSG00000083491.1 ENSMUSG00000083491 ENSMUST00000118334 Gm12423 processed_pseudogene Interval_76073 chr17 74717193 74718202 + 0 NA promoter-TSS (ENSMUSG00000024078.7) protein_coding-promoter-TSS (ENSMUSG00000024078.7) -52369 ENSMUSG00000024078.7 ENSMUSG00000024078 ENSMUST00000234264 Ttc27 protein_coding Interval_14019 chr10 25587782 25589648 + 0 NA intron (ENSMUSG00000101537.1, intron 3 of 3) antisense-intron (ENSMUSG00000101537.1, intron 3 of 3) 32848 ENSMUSG00000112630.1 ENSMUSG00000112630 ENSMUST00000218080 Gm36908 lincRNA Interval_84152 chr19 7566564 7566782 + 0 NA intron (ENSMUSG00000060675.13, intron 1 of 2) protein_coding-intron (ENSMUSG00000060675.13, intron 2 of 4) 9196 ENSMUSG00000060675.13 ENSMUSG00000060675 ENSMUST00000136756 Plaat3 protein_coding Interval_1331 chr1 20743717 20744485 + 0 NA Intergenic Intergenic 13196 ENSMUSG00000025929.4 ENSMUSG00000025929 ENSMUST00000027061 Il17a protein_coding Interval_11158 chr1 179743116 179744726 + 0 NA TTS (ENSMUSG00000026491.13) protein_coding-TTS (ENSMUSG00000026491.13) -43641 ENSMUSG00000087236.3 ENSMUSG00000087236 ENSMUST00000223392 Kif28 protein_coding Interval_116274 chr4 109220183 109220572 + 0 NA Intergenic Intergenic -18143 ENSMUSG00000028559.17 ENSMUSG00000028559 ENSMUST00000159758 Osbpl9 protein_coding Interval_58201 chr15 30693604 30694805 + 0 NA intron (ENSMUSG00000022240.10, intron 1 of 2) protein_coding-intron (ENSMUSG00000022240.10, intron 9 of 22) -67583 ENSMUSG00000115337.1 ENSMUSG00000115337 ENSMUST00000228499 4930570B17Rik antisense Interval_106762 chr3 100534934 100535536 + 0 NA Intergenic Intergenic 37806 ENSMUSG00000104943.1 ENSMUSG00000104943 ENSMUST00000199168 Gm42868 sense_intronic Interval_93445 chr2 73094116 73094738 + 0 NA intron (ENSMUSG00000027108.15, intron 6 of 6) protein_coding-intron (ENSMUSG00000027108.15, intron 10 of 10) -22321 ENSMUSG00000082455.3 ENSMUSG00000082455 ENSMUST00000120830 Gm13665 processed_pseudogene Interval_70832 chr17 15185312 15185589 + 0 NA Intergenic Intergenic 33291 ENSMUSG00000116655.1 ENSMUSG00000116655 ENSMUST00000231330 Gm35455 lincRNA Interval_32547 chr11 108444054 108444347 + 0 NA intron (ENSMUSG00000020728.17, intron 5 of 5) protein_coding-intron (ENSMUSG00000020728.17, intron 5 of 27) 20927 ENSMUSG00000082544.1 ENSMUSG00000082544 ENSMUST00000119828 Gm11667 processed_pseudogene Interval_99135 chr2 157417915 157419367 + 0 NA intron (ENSMUSG00000027646.15, intron 1 of 13) protein_coding-intron (ENSMUSG00000027646.15, intron 1 of 13) -5475 ENSMUSG00000027646.15 ENSMUSG00000027646 ENSMUST00000109529 Src protein_coding Interval_49086 chr13 107861101 107862954 + 0 NA intron (ENSMUSG00000032846.10, intron 1 of 12) protein_coding-intron (ENSMUSG00000032846.10, intron 2 of 14) 28037 ENSMUSG00000032846.10 ENSMUSG00000032846 ENSMUST00000224719 Zswim6 protein_coding Interval_88099 chr19 59113360 59113991 + 0 NA Intergenic Intergenic 26104 ENSMUSG00000118377.1 ENSMUSG00000118377 ENSMUST00000237392 Gm9276 processed_pseudogene Interval_141655 chr6 132302424 132302850 + 0 NA Intergenic Intergenic 12120 ENSMUSG00000107874.1 ENSMUSG00000107874 ENSMUST00000048686 Prpmp5 protein_coding Interval_28993 chr11 79778599 79779231 + 0 NA Intergenic Intergenic 26257 ENSMUSG00000086474.2 ENSMUSG00000086474 ENSMUST00000162268 9130204K15Rik lincRNA Interval_8046 chr1 135405515 135405960 + 0 NA TTS (ENSMUSG00000041879.13) protein_coding-TTS (ENSMUSG00000041879.13) 8449 ENSMUSG00000100620.1 ENSMUSG00000100620 ENSMUST00000187450 Gm28277 sense_intronic Interval_32240 chr11 106391983 106393759 + 0 NA Intergenic Intergenic -12070 ENSMUSG00000001029.15 ENSMUSG00000001029 ENSMUST00000106809 Icam2 protein_coding Interval_120663 chr4 149970011 149970484 + 0 NA Intergenic Intergenic 31018 ENSMUSG00000028980.14 ENSMUSG00000028980 ENSMUST00000152907 H6pd protein_coding Interval_103172 chr3 36247769 36249034 + 0 NA Intergenic Intergenic -26126 ENSMUSG00000058400.13 ENSMUSG00000058400 ENSMUST00000197275 Qrfpr protein_coding Interval_57040 chr15 5086087 5086601 + 0 NA Intergenic Intergenic -6203 ENSMUSG00000080720.2 ENSMUSG00000080720 ENSMUST00000121915 Gm16077 processed_pseudogene Interval_1458 chr1 23718565 23719180 + 0 NA Intergenic Intergenic -42881 ENSMUSG00000026156.8 ENSMUSG00000026156 ENSMUST00000140583 B3gat2 protein_coding Interval_96928 chr2 129601806 129602315 + 0 NA intron (ENSMUSG00000037902.18, intron 1 of 1) protein_coding-intron (ENSMUSG00000037902.18, intron 1 of 7) 9221 ENSMUSG00000037902.18 ENSMUSG00000037902 ENSMUST00000162764 Sirpa protein_coding Interval_168953 chr9 89610204 89610908 + 0 NA intron (ENSMUSG00000039313.14, intron 1 of 3) protein_coding-intron (ENSMUSG00000039313.14, intron 1 of 3) -7165 ENSMUSG00000039313.14 ENSMUSG00000039313 ENSMUST00000191465 Minar1 protein_coding Interval_131251 chr5 136002162 136003162 + 0 NA intron (ENSMUSG00000004947.15, intron 3 of 3) protein_coding-intron (ENSMUSG00000004947.15, intron 2 of 10) 7815 ENSMUSG00000004947.15 ENSMUSG00000004947 ENSMUST00000142041 Dtx2 protein_coding Interval_75145 chr17 64003518 64003873 + 0 NA intron (ENSMUSG00000000127.15, intron 11 of 17) protein_coding-intron (ENSMUSG00000000127.15, intron 11 of 17) -139904 ENSMUSG00000045506.3 ENSMUSG00000045506 ENSMUST00000050753 A930002H24Rik protein_coding Interval_33405 chr11 116387013 116389395 + 0 NA promoter-TSS (ENSMUSG00000052949.14) protein_coding-promoter-TSS (ENSMUSG00000052949.14) 5454 ENSMUSG00000081929.1 ENSMUSG00000081929 ENSMUST00000121547 Rps11-ps2 processed_pseudogene Interval_164586 chr9 39509069 39509579 + 0 NA TTS (ENSMUSG00000095322.2) protein_coding-TTS (ENSMUSG00000095322.2) 6485 ENSMUSG00000095322.2 ENSMUSG00000095322 ENSMUST00000051653 Olfr957 protein_coding Interval_72143 chr17 28259581 28260708 + 0 NA intron (ENSMUSG00000002250.16, intron 2 of 6) protein_coding-intron (ENSMUSG00000002250.16, intron 2 of 7) 27370 ENSMUSG00000002250.16 ENSMUSG00000002250 ENSMUST00000233383 Ppard protein_coding Interval_11724 chr1 184890198 184890727 + 0 NA Intergenic Intergenic -7244 ENSMUSG00000039349.5 ENSMUSG00000039349 ENSMUST00000048308 C130074G19Rik protein_coding Interval_121731 chr5 5918349 5918841 + 0 NA Intergenic Intergenic 96429 ENSMUSG00000088692.1 ENSMUSG00000088692 ENSMUST00000158067 Gm23838 snRNA Interval_51899 chr14 33495787 33495987 + 0 NA intron (ENSMUSG00000108841.1, intron 3 of 4) protein_coding-intron (ENSMUSG00000108841.1, intron 2 of 29) 24191 ENSMUSG00000108841.1 ENSMUSG00000108841 ENSMUST00000208380 Frmpd2 protein_coding Interval_163168 chr9 16500094 16503167 + 0 NA promoter-TSS (ENSMUSG00000074505.6) protein_coding-promoter-TSS (ENSMUSG00000074505.6) -345 ENSMUSG00000074505.6 ENSMUSG00000074505 ENSMUST00000213517 Fat3 protein_coding Interval_167192 chr9 66068872 66070132 + 0 NA exon (ENSMUSG00000039452.6, exon 1 of 2) protein_coding-exon (ENSMUSG00000039452.6, exon 1 of 2) 213 ENSMUSG00000039452.6 ENSMUSG00000039452 ENSMUST00000214332 Snx22 protein_coding Interval_27256 chr11 64996446 64998013 + 0 NA intron (ENSMUSG00000020549.14, intron 16 of 23) protein_coding-intron (ENSMUSG00000020549.14, intron 16 of 24) 18157 ENSMUSG00000020549.14 ENSMUSG00000020549 ENSMUST00000128693 Elac2 protein_coding Interval_38681 chr12 80998599 80999535 + 0 NA Intergenic Intergenic -27761 ENSMUSG00000021136.13 ENSMUSG00000021136 ENSMUST00000129362 Smoc1 protein_coding Interval_128575 chr5 114113180 114114327 + 0 NA intron (ENSMUSG00000029592.11, intron 7 of 11) protein_coding-intron (ENSMUSG00000029592.11, intron 7 of 12) -2076 ENSMUSG00000105514.1 ENSMUSG00000105514 ENSMUST00000197936 Gm42913 TEC Interval_127214 chr5 101431163 101432646 + 0 NA Intergenic Intergenic 74425 ENSMUSG00000106610.1 ENSMUSG00000106610 ENSMUST00000199021 Gm43103 processed_pseudogene Interval_83021 chr18 80548128 80549295 + 0 NA Intergenic Intergenic -4696 ENSMUSG00000118319.1 ENSMUSG00000118319 ENSMUST00000237325 Gm2176 transcribed_processed_pseudogene Interval_170269 chr9 106590230 106591120 + 0 NA Intergenic Intergenic -19679 ENSMUSG00000041009.8 ENSMUSG00000041009 ENSMUST00000085111 Iqcf4 protein_coding Interval_84366 chr19 10402554 10403817 + 0 NA promoter-TSS (ENSMUSG00000024743.16) protein_coding-promoter-TSS (ENSMUSG00000024743.16) 13702 ENSMUSG00000024743.16 ENSMUSG00000024743 ENSMUST00000235717 Syt7 protein_coding Interval_165951 chr9 54896903 54897654 + 0 NA promoter-TSS (ENSMUSG00000032293.8) protein_coding-promoter-TSS (ENSMUSG00000032293.8) -195 ENSMUSG00000032293.8 ENSMUSG00000032293 ENSMUST00000213482 Ireb2 protein_coding Interval_49136 chr13 108367412 108368177 + 0 NA intron (ENSMUSG00000021697.12, intron 3 of 4) protein_coding-intron (ENSMUSG00000021697.12, intron 5 of 10) 10368 ENSMUSG00000021697.12 ENSMUSG00000021697 ENSMUST00000172402 Depdc1b protein_coding Interval_149843 chr7 101955914 101956556 + 0 NA TTS (ENSMUSG00000109872.1) processed_pseudogene-TTS (ENSMUSG00000109872.1) 1050 ENSMUSG00000109872.1 ENSMUSG00000109872 ENSMUST00000210566 Gm45312 processed_pseudogene Interval_72752 chr17 31920388 31921307 + 0 NA Intergenic Intergenic 8181 ENSMUSG00000117980.1 ENSMUSG00000117980 ENSMUST00000237005 Gm30571 TEC Interval_153072 chr7 141176061 141176598 + 0 NA Intergenic Intergenic 2135 ENSMUSG00000110275.1 ENSMUSG00000110275 ENSMUST00000211731 Gm5905 processed_pseudogene Interval_51031 chr14 21674409 21674649 + 0 NA Intergenic Intergenic 28573 ENSMUSG00000063821.6 ENSMUSG00000063821 ENSMUST00000224735 Dupd1 protein_coding Interval_86036 chr19 35204066 35204456 + 0 NA TTS (ENSMUSG00000089087.1) snoRNA-TTS (ENSMUSG00000089087.1) 1026 ENSMUSG00000089087.1 ENSMUSG00000089087 ENSMUST00000158462 Gm24006 snoRNA Interval_94708 chr2 93580786 93581056 + 0 NA Intergenic Intergenic -61467 ENSMUSG00000040310.12 ENSMUSG00000040310 ENSMUST00000111254 Alx4 protein_coding Interval_104 GL456221.1 184109 184552 + 0 NA NA NA NA NA Interval_139471 chr6 100389942 100391297 + 0 NA Intergenic Intergenic -103871 ENSMUSG00000072872.3 ENSMUSG00000072872 ENSMUST00000205164 Rybp protein_coding Interval_37438 chr12 68778449 68778813 + 0 NA Intergenic Intergenic 33666 ENSMUSG00000112933.1 ENSMUSG00000112933 ENSMUST00000223294 Gm47491 processed_pseudogene Interval_31713 chr11 102387884 102388179 + 0 NA Intergenic Intergenic -11011 ENSMUSG00000087330.1 ENSMUSG00000087330 ENSMUST00000126237 Bloodlinc lincRNA Interval_52662 chr14 48358834 48359082 + 0 NA Intergenic Intergenic 3657 ENSMUSG00000114991.1 ENSMUSG00000114991 ENSMUST00000228144 1700128I11Rik lincRNA Interval_158175 chr8 79539215 79539578 + 0 NA Intergenic Intergenic 11352 ENSMUSG00000097975.1 ENSMUSG00000097975 ENSMUST00000182695 Gm8079 processed_pseudogene Interval_118603 chr4 132723871 132725865 + 0 NA TTS (ENSMUSG00000028886.15) protein_coding-TTS (ENSMUSG00000028886.15) 7660 ENSMUSG00000037752.4 ENSMUSG00000037752 ENSMUST00000143642 Xkr8 protein_coding Interval_127298 chr5 102213079 102213822 + 0 NA Intergenic Intergenic 51159 ENSMUSG00000106189.1 ENSMUSG00000106189 ENSMUST00000196547 Gm42933 processed_pseudogene Interval_52948 chr14 52195787 52198719 + 0 NA promoter-TSS (ENSMUSG00000097533.2) antisense-promoter-TSS (ENSMUSG00000097533.2) -4909 ENSMUSG00000097533.2 ENSMUSG00000097533 ENSMUST00000227448 Gm26590 antisense Interval_43644 chr13 34391568 34391761 + 0 NA Intergenic Intergenic 2860 ENSMUSG00000113843.1 ENSMUSG00000113843 ENSMUST00000220725 Gm6129 processed_pseudogene Interval_147101 chr7 62922198 62922547 + 0 NA Intergenic Intergenic -98699 ENSMUSG00000109344.1 ENSMUSG00000109344 ENSMUST00000207359 A26c2 protein_coding Interval_89120 chr2 16824154 16825217 + 0 NA Intergenic Intergenic 135333 ENSMUSG00000076950.1 ENSMUSG00000076950 ENSMUST00000103762 Gm24933 miRNA Interval_68372 chr16 74768350 74768812 + 0 NA Intergenic Intergenic 107357 ENSMUSG00000116881.1 ENSMUSG00000116881 ENSMUST00000232678 Gm49674 TEC Interval_112984 chr4 46622018 46623226 + 0 NA intron (ENSMUSG00000039813.14, intron 5 of 12) protein_coding-intron (ENSMUSG00000039813.14, intron 5 of 12) -20731 ENSMUSG00000028337.14 ENSMUSG00000028337 ENSMUST00000127304 Coro2a protein_coding Interval_39995 chr12 100348244 100348640 + 0 NA intron (ENSMUSG00000033530.8, intron 1 of 6) protein_coding-intron (ENSMUSG00000033530.8, intron 16 of 19) 21310 ENSMUSG00000113917.1 ENSMUSG00000113917 ENSMUST00000220812 Gm48382 TEC Interval_92851 chr2 66634367 66635377 + 0 NA promoter-TSS (ENSMUSG00000075316.11) protein_coding-promoter-TSS (ENSMUSG00000075316.11) -219 ENSMUSG00000075316.11 ENSMUSG00000075316 ENSMUST00000141603 Scn9a protein_coding Interval_145606 chr7 35922478 35923519 + 0 NA Intergenic Intergenic 84738 ENSMUSG00000100387.1 ENSMUSG00000100387 ENSMUST00000187488 Gm28514 lincRNA Interval_151327 chr7 121077561 121078720 + 0 NA exon (ENSMUSG00000030876.7, exon 1 of 1) protein_coding-exon (ENSMUSG00000030876.7, exon 1 of 1) 2853 ENSMUSG00000030876.7 ENSMUSG00000030876 ENSMUST00000207835 Mettl9 protein_coding Interval_95207 chr2 104801072 104801756 + 0 NA intron (ENSMUSG00000074994.6, intron 1 of 12) protein_coding-intron (ENSMUSG00000074994.6, intron 1 of 11) 15346 ENSMUSG00000074994.6 ENSMUSG00000074994 ENSMUST00000238887 Qser1 protein_coding Interval_141218 chr6 125710820 125711651 + 0 NA promoter-TSS (ENSMUSG00000038115.16) protein_coding-promoter-TSS (ENSMUSG00000038115.16) 609 ENSMUSG00000038115.16 ENSMUSG00000038115 ENSMUST00000159984 Ano2 protein_coding Interval_15519 chr10 50669849 50670023 + 0 NA intron (ENSMUSG00000038774.9, intron 13 of 41) protein_coding-intron (ENSMUSG00000038774.9, intron 13 of 41) -26536 ENSMUSG00000112927.1 ENSMUSG00000112927 ENSMUST00000217818 Gm48332 TEC Interval_16161 chr10 61133670 61134677 + 0 NA intron (ENSMUSG00000020097.14, intron 2 of 6) protein_coding-intron (ENSMUSG00000020097.14, intron 2 of 14) -8938 ENSMUSG00000104762.1 ENSMUSG00000104762 ENSMUST00000197080 Gm44308 miRNA Interval_11305 chr1 180850348 180851402 + 0 NA promoter-TSS (ENSMUSG00000038806.7) protein_coding-promoter-TSS (ENSMUSG00000038806.7) 3583 ENSMUSG00000103979.1 ENSMUSG00000103979 ENSMUST00000193226 Gm20305 processed_pseudogene Interval_15479 chr10 48405219 48405727 + 0 NA Intergenic Intergenic 6194 ENSMUSG00000112062.1 ENSMUSG00000112062 ENSMUST00000219040 Gm47353 TEC Interval_9612 chr1 160217861 160218725 + 0 NA TTS (ENSMUSG00000026721.16) protein_coding-TTS (ENSMUSG00000026721.16) 5350 ENSMUSG00000103006.1 ENSMUSG00000103006 ENSMUST00000193962 4933417C20Rik TEC Interval_122375 chr5 21791831 21792874 + 0 NA intron (ENSMUSG00000028932.8, intron 2 of 12) protein_coding-intron (ENSMUSG00000028932.8, intron 2 of 12) 7069 ENSMUSG00000028932.8 ENSMUSG00000028932 ENSMUST00000132720 Psmc2 protein_coding Interval_12701 chr10 4380747 4380996 + 0 NA intron (ENSMUSG00000075327.10, intron 1 of 2) protein_coding-intron (ENSMUSG00000075327.10, intron 1 of 2) -6996 ENSMUSG00000075327.10 ENSMUSG00000075327 ENSMUST00000215860 Zbtb2 protein_coding Interval_21506 chr10 128988956 128989253 + 0 NA promoter-TSS (ENSMUSG00000069430.3) protein_coding-promoter-TSS (ENSMUSG00000069430.3) -327 ENSMUSG00000069430.3 ENSMUSG00000069430 ENSMUST00000091996 Olfr9 protein_coding Interval_35984 chr12 33118764 33119494 + 0 NA exon (ENSMUSG00000052125.16, exon 5 of 6) bidirectional_promoter_lncRNA-exon (ENSMUSG00000052125.16, exon 5 of 6) 7167 ENSMUSG00000084979.1 ENSMUSG00000084979 ENSMUST00000140569 Gm16267 lincRNA Interval_7311 chr1 128788425 128788638 + 0 NA Intergenic Intergenic -14110 ENSMUSG00000097283.1 ENSMUSG00000097283 ENSMUST00000181951 Gm26686 lincRNA Interval_18427 chr10 85828788 85830066 + 0 NA promoter-TSS (ENSMUSG00000001785.13) protein_coding-promoter-TSS (ENSMUSG00000001785.13) -315 ENSMUSG00000112326.1 ENSMUSG00000112326 ENSMUST00000218949 Gm19624 unprocessed_pseudogene Interval_70125 chr17 5510964 5511541 + 0 NA intron (ENSMUSG00000034265.8, intron 1 of 8) protein_coding-intron (ENSMUSG00000034265.8, intron 1 of 8) 18695 ENSMUSG00000034265.8 ENSMUSG00000034265 ENSMUST00000089185 Zdhhc14 protein_coding Interval_149851 chr7 101998257 101999362 + 0 NA exon (ENSMUSG00000066306.13, exon 14 of 25) protein_coding-exon (ENSMUSG00000066306.13, exon 14 of 25) -18549 ENSMUSG00000110287.1 ENSMUSG00000110287 ENSMUST00000210584 Gm45313 processed_pseudogene Interval_124696 chr5 53364450 53365652 + 0 NA intron (ENSMUSG00000106808.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000106808.1, intron 1 of 1) 6723 ENSMUSG00000106808.1 ENSMUSG00000106808 ENSMUST00000200904 Gm42745 lincRNA Interval_20339 chr10 116986678 116988081 + 0 NA intron (ENSMUSG00000020169.4, intron 1 of 9) protein_coding-intron (ENSMUSG00000020169.4, intron 1 of 9) 1065 ENSMUSG00000020169.4 ENSMUSG00000020169 ENSMUST00000020378 Best3 protein_coding Interval_129399 chr5 119741080 119741621 + 0 NA Intergenic Intergenic -50132 ENSMUSG00000086847.1 ENSMUSG00000086847 ENSMUST00000135385 Tbx3os2 lincRNA Interval_41266 chr12 112273323 112273782 + 0 NA Intergenic Intergenic -68399 ENSMUSG00000113282.1 ENSMUSG00000113282 ENSMUST00000220716 Gm20368 processed_pseudogene Interval_161736 chr8 122432332 122433500 + 0 NA promoter-TSS (ENSMUSG00000006519.11) protein_coding-promoter-TSS (ENSMUSG00000006519.11) -11 ENSMUSG00000006519.11 ENSMUSG00000006519 ENSMUST00000212822 Cyba protein_coding Interval_11649 chr1 183817608 183817974 + 0 NA Intergenic Intergenic 68814 ENSMUSG00000103305.1 ENSMUSG00000103305 ENSMUST00000193310 Gm34068 lincRNA Interval_164305 chr9 35185794 35187218 + 0 NA TTS (ENSMUSG00000032041.15) protein_coding-TTS (ENSMUSG00000032041.15) -2157 ENSMUSG00000110774.1 ENSMUSG00000110774 ENSMUST00000214606 Gm39318 antisense Interval_49302 chr13 110435838 110437325 + 0 NA Intergenic Intergenic 40569 ENSMUSG00000021701.8 ENSMUSG00000021701 ENSMUST00000225156 Plk2 protein_coding Interval_137286 chr6 71062872 71063224 + 0 NA Intergenic Intergenic -23315 ENSMUSG00000077369.1 ENSMUSG00000077369 ENSMUST00000104181 Gm23485 snRNA Interval_144779 chr7 28195509 28197021 + 0 NA Intergenic Intergenic 16771 ENSMUSG00000002409.18 ENSMUSG00000002409 ENSMUST00000172467 Dyrk1b protein_coding Interval_146876 chr7 54510120 54510712 + 0 NA Intergenic Intergenic -97938 ENSMUSG00000099647.1 ENSMUSG00000099647 ENSMUST00000122119 Gm5776 processed_pseudogene Interval_16864 chr10 69335508 69336465 + 0 NA exon (ENSMUSG00000019942.13, exon 8 of 8) protein_coding-exon (ENSMUSG00000019942.13, exon 8 of 8) 14844 ENSMUSG00000019942.13 ENSMUSG00000019942 ENSMUST00000124054 Cdk1 protein_coding Interval_11811 chr1 185615949 185616281 + 0 NA Intergenic Intergenic -128688 ENSMUSG00000103799.1 ENSMUSG00000103799 ENSMUST00000195210 Gm38093 lincRNA Interval_40116 chr12 101699274 101699493 + 0 NA intron (ENSMUSG00000021187.14, intron 3 of 11) protein_coding-intron (ENSMUSG00000021187.14, intron 3 of 12) 19140 ENSMUSG00000021187.14 ENSMUSG00000021187 ENSMUST00000160830 Tc2n protein_coding Interval_42384 chr13 12502773 12503504 + 0 NA intron (ENSMUSG00000095105.2, intron 3 of 5) protein_coding-intron (ENSMUSG00000095105.2, intron 3 of 5) 17300 ENSMUSG00000095105.2 ENSMUSG00000095105 ENSMUST00000179308 Edaradd protein_coding Interval_7948 chr1 134729395 134729943 + 0 NA intron (ENSMUSG00000026452.15, intron 1 of 8) protein_coding-intron (ENSMUSG00000026452.15, intron 1 of 8) 72316 ENSMUSG00000103614.1 ENSMUSG00000103614 ENSMUST00000192808 Gm37949 TEC Interval_137028 chr6 66577667 66578153 + 0 NA TTS (ENSMUSG00000107710.1) processed_pseudogene-TTS (ENSMUSG00000107710.1) 700 ENSMUSG00000107710.1 ENSMUSG00000107710 ENSMUST00000204772 Gm5307 processed_pseudogene Interval_172632 chrX 38589634 38590600 + 0 NA Intergenic Intergenic -19686 ENSMUSG00000000355.13 ENSMUSG00000000355 ENSMUST00000148938 Mcts1 protein_coding Interval_39310 chr12 86612063 86613226 + 0 NA Intergenic Intergenic -37929 ENSMUSG00000113369.1 ENSMUSG00000113369 ENSMUST00000220511 Gm8504 processed_pseudogene Interval_12110 chr1 189802598 189803602 + 0 NA intron (ENSMUSG00000026604.17, intron 3 of 9) protein_coding-intron (ENSMUSG00000026604.17, intron 2 of 17) -24130 ENSMUSG00000102248.1 ENSMUSG00000102248 ENSMUST00000192214 Gm30280 processed_pseudogene Interval_14649 chr10 37725657 37725863 + 0 NA Intergenic Intergenic -205920 ENSMUSG00000096080.1 ENSMUSG00000096080 ENSMUST00000175235 Gm24710 miRNA Interval_86768 chr19 43729483 43730297 + 0 NA exon (ENSMUSG00000025192.13, exon 13 of 13) protein_coding-exon (ENSMUSG00000025192.13, exon 13 of 13) 10212 ENSMUSG00000040018.9 ENSMUSG00000040018 ENSMUST00000129242 Cox15 protein_coding Interval_31265 chr11 99206719 99208462 + 0 NA Intergenic Intergenic 5853 ENSMUSG00000037935.16 ENSMUSG00000037935 ENSMUST00000128215 Smarce1 protein_coding Interval_12444 chr1 193510054 193510809 + 0 NA promoter-TSS (ENSMUSG00000097850.2) lincRNA-promoter-TSS (ENSMUSG00000097850.2) -257 ENSMUSG00000097850.2 ENSMUSG00000097850 ENSMUST00000180420 Mir205hg lincRNA Interval_155830 chr8 39824032 39824339 + 0 NA Intergenic Intergenic -103219 ENSMUSG00000109789.1 ENSMUSG00000109789 ENSMUST00000210753 Gm2033 processed_pseudogene Interval_110047 chr3 152748718 152749823 + 0 NA intron (ENSMUSG00000039047.17, intron 9 of 13) protein_coding-intron (ENSMUSG00000039047.17, intron 10 of 11) 32791 ENSMUSG00000090095.1 ENSMUSG00000090095 ENSMUST00000161849 Rpl29-ps1 processed_pseudogene Interval_64640 chr16 13831528 13832623 + 0 NA intron (ENSMUSG00000022681.15, intron 5 of 5) protein_coding-intron (ENSMUSG00000022681.15, intron 7 of 9) 12843 ENSMUSG00000099314.1 ENSMUSG00000099314 ENSMUST00000183701 Gm27734 miRNA Interval_44378 chr13 44454170 44455165 + 0 NA intron (ENSMUSG00000098107.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000098144.8, intron 1 of 3) 636 ENSMUSG00000098107.1 ENSMUSG00000098107 ENSMUST00000183264 Gm27007 lincRNA Interval_100984 chr2 173823712 173824022 + 0 NA intron (ENSMUSG00000085938.1, intron 1 of 4) unprocessed_pseudogene-intron (ENSMUSG00000085938.1, intron 1 of 4) 23803 ENSMUSG00000085938.1 ENSMUSG00000085938 ENSMUST00000138925 Gm14371 unprocessed_pseudogene Interval_79329 chr18 30590882 30591226 + 0 NA Intergenic Intergenic 17836 ENSMUSG00000117526.1 ENSMUSG00000117526 ENSMUST00000235078 Gm41780 processed_pseudogene Interval_88417 chr2 4957528 4958682 + 0 NA Intergenic Intergenic 1647 ENSMUSG00000069188.5 ENSMUSG00000069188 ENSMUST00000101199 Gm13192 processed_pseudogene Interval_54306 chr14 67463184 67463661 + 0 NA Intergenic Intergenic -13451 ENSMUSG00000114744.1 ENSMUSG00000114744 ENSMUST00000223991 Gm38409 lincRNA Interval_155976 chr8 41373814 41375298 + 0 NA promoter-TSS (ENSMUSG00000031591.14) protein_coding-promoter-TSS (ENSMUSG00000031591.14) 217 ENSMUSG00000031591.14 ENSMUSG00000031591 ENSMUST00000143057 Asah1 protein_coding Interval_94345 chr2 90087079 90087861 + 0 NA Intergenic Intergenic -1011 ENSMUSG00000075067.4 ENSMUSG00000075067 ENSMUST00000118957 Olfr1267-ps1 polymorphic_pseudogene Interval_80547 chr18 43828183 43828372 + 0 NA Intergenic Intergenic -11819 ENSMUSG00000117902.1 ENSMUSG00000117902 ENSMUST00000237459 Gm41715 lincRNA Interval_61181 chr15 79803683 79805279 + 0 NA exon (ENSMUSG00000022421.19, exon 1 of 5) protein_coding-exon (ENSMUSG00000022421.19, exon 1 of 5) 228 ENSMUSG00000022421.19 ENSMUSG00000022421 ENSMUST00000125283 Nptxr protein_coding Interval_160179 chr8 106963061 106964991 + 0 NA intron (ENSMUSG00000041308.6, intron 1 of 6) protein_coding-intron (ENSMUSG00000041308.6, intron 1 of 5) 28276 ENSMUSG00000041308.6 ENSMUSG00000041308 ENSMUST00000212298 Sntb2 protein_coding Interval_90050 chr2 27529890 27530828 + 0 NA intron (ENSMUSG00000026917.15, intron 1 of 3) protein_coding-intron (ENSMUSG00000026917.15, intron 9 of 13) 9571 ENSMUSG00000080538.1 ENSMUSG00000080538 ENSMUST00000116888 Gm25541 snRNA Interval_130452 chr5 127720479 127721239 + 0 NA Intergenic Intergenic 88597 ENSMUSG00000049971.17 ENSMUSG00000049971 ENSMUST00000134529 Glt1d1 protein_coding Interval_123919 chr5 36549213 36549831 + 0 NA intron (ENSMUSG00000029192.17, intron 2 of 2) protein_coding-intron (ENSMUSG00000029192.17, intron 2 of 13) -41860 ENSMUSG00000029192.17 ENSMUSG00000029192 ENSMUST00000147603 Tbc1d14 protein_coding Interval_21357 chr10 128137590 128137813 + 0 NA promoter-TSS (ENSMUSG00000040043.17) protein_coding-promoter-TSS (ENSMUSG00000040043.17) 42596 ENSMUSG00000040043.17 ENSMUSG00000040043 ENSMUST00000218884 Rbms2 protein_coding Interval_150365 chr7 109928054 109928458 + 0 NA intron (ENSMUSG00000035901.14, intron 3 of 21) protein_coding-intron (ENSMUSG00000035901.14, intron 4 of 22) -30700 ENSMUSG00000035901.14 ENSMUSG00000035901 ENSMUST00000151923 Dennd5a protein_coding Interval_115220 chr4 94536278 94536642 + 0 NA intron (ENSMUSG00000028578.8, intron 4 of 5) protein_coding-intron (ENSMUSG00000028578.8, intron 4 of 5) 20306 ENSMUSG00000028578.8 ENSMUSG00000028578 ENSMUST00000153294 Caap1 protein_coding Interval_148600 chr7 83030632 83030840 + 0 NA Intergenic Intergenic 35901 ENSMUSG00000077149.1 ENSMUSG00000077149 ENSMUST00000103961 Gm22934 snoRNA Interval_116259 chr4 109095013 109095996 + 0 NA intron (ENSMUSG00000028559.17, intron 7 of 22) protein_coding-intron (ENSMUSG00000028559.17, intron 8 of 23) 65693 ENSMUSG00000088014.1 ENSMUSG00000088014 ENSMUST00000157389 Gm23743 misc_RNA Interval_144145 chr7 19647046 19647323 + 0 NA intron (ENSMUSG00000002981.10, intron 2 of 12) protein_coding-intron (ENSMUSG00000002981.10, intron 2 of 13) -9438 ENSMUSG00000002981.10 ENSMUSG00000002981 ENSMUST00000208594 Clptm1 protein_coding Interval_9802 chr1 162531422 162532062 + 0 NA TTS (ENSMUSG00000026694.19) protein_coding-TTS (ENSMUSG00000026694.19) 16787 ENSMUSG00000026694.19 ENSMUSG00000026694 ENSMUST00000195027 Eef1aknmt protein_coding Interval_164670 chr9 40468869 40469078 + 0 NA intron (ENSMUSG00000040111.17, intron 1 of 20) protein_coding-intron (ENSMUSG00000040111.17, intron 1 of 20) -18747 ENSMUSG00000111515.1 ENSMUSG00000111515 ENSMUST00000215697 Gm5055 processed_pseudogene Interval_2703 chr1 43589607 43589797 + 0 NA Intergenic Intergenic 29429 ENSMUSG00000103945.1 ENSMUSG00000103945 ENSMUST00000193169 Gm38228 TEC Interval_7156 chr1 127280188 127280489 + 0 NA intron (ENSMUSG00000036155.13, intron 2 of 10) protein_coding-intron (ENSMUSG00000036155.13, intron 2 of 17) 2770 ENSMUSG00000099471.1 ENSMUSG00000099471 ENSMUST00000170338 Gm8451 processed_pseudogene Interval_58819 chr15 38308685 38308901 + 0 NA Intergenic Intergenic -3500 ENSMUSG00000115456.1 ENSMUSG00000115456 ENSMUST00000227097 Gm35248 lincRNA Interval_92484 chr2 60059503 60059746 + 0 NA intron (ENSMUSG00000026987.16, intron 1 of 34) protein_coding-intron (ENSMUSG00000026987.16, intron 1 of 34) 22483 ENSMUSG00000085975.1 ENSMUSG00000085975 ENSMUST00000153675 Gm13572 lincRNA Interval_56027 chr14 104788968 104790175 + 0 NA intron (ENSMUSG00000115432.1, intron 2 of 3) lincRNA-intron (ENSMUSG00000115432.1, intron 2 of 4) 150447 ENSMUSG00000115432.1 ENSMUSG00000115432 ENSMUST00000228036 D130009I18Rik lincRNA Interval_81316 chr18 57872580 57872872 + 0 NA Intergenic Intergenic -54479 ENSMUSG00000024597.11 ENSMUSG00000024597 ENSMUST00000236673 Slc12a2 protein_coding Interval_32063 chr11 104970721 104971718 + 0 NA intron (ENSMUSG00000040838.10, intron 124 of 187) protein_coding-intron (ENSMUSG00000040838.10, intron 124 of 187) 43003 ENSMUSG00000080694.1 ENSMUSG00000080694 ENSMUST00000118253 Gm11621 processed_pseudogene Interval_105494 chr3 87015417 87016243 + 0 NA Intergenic Intergenic 8053 ENSMUSG00000104265.1 ENSMUSG00000104265 ENSMUST00000195222 Gm8869 processed_pseudogene Interval_126545 chr5 90144473 90145319 + 0 NA Intergenic Intergenic 12667 ENSMUSG00000043618.9 ENSMUSG00000043618 ENSMUST00000135410 Eif5al3-ps processed_pseudogene Interval_28344 chr11 75301492 75301786 + 0 NA intron (ENSMUSG00000000751.13, intron 16 of 16) protein_coding-intron (ENSMUSG00000000751.13, intron 17 of 17) 16969 ENSMUSG00000106179.1 ENSMUSG00000106179 ENSMUST00000198372 Gm47300 miRNA Interval_124939 chr5 61184940 61185351 + 0 NA Intergenic Intergenic 153588 ENSMUSG00000106370.2 ENSMUSG00000106370 ENSMUST00000198954 Gm43382 processed_pseudogene Interval_1994 chr1 35763054 35764011 + 0 NA Intergenic Intergenic 1930 ENSMUSG00000064601.1 ENSMUSG00000064601 ENSMUST00000082667 Gm25634 snRNA Interval_113201 chr4 49596887 49598056 + 0 NA promoter-TSS (ENSMUSG00000039611.2) protein_coding-promoter-TSS (ENSMUSG00000039611.2) -3581 ENSMUSG00000039611.2 ENSMUSG00000039611 ENSMUST00000151542 Tmem246 protein_coding Interval_66101 chr16 31609732 31610235 + 0 NA Intergenic Intergenic -7752 ENSMUSG00000116597.1 ENSMUSG00000116597 ENSMUST00000232209 Gm536 lincRNA Interval_159456 chr8 94844638 94845300 + 0 NA intron (ENSMUSG00000031782.15, intron 3 of 7) protein_coding-intron (ENSMUSG00000031782.15, intron 3 of 8) -6704 ENSMUSG00000031781.14 ENSMUSG00000031781 ENSMUST00000162589 Ciapin1 protein_coding Interval_18838 chr10 91194256 91195718 + 0 NA Intergenic Intergenic -24525 ENSMUSG00000019961.17 ENSMUSG00000019961 ENSMUST00000213270 Tmpo protein_coding Interval_25466 chr11 48779509 48780075 + 0 NA Intergenic Intergenic -20540 ENSMUSG00000020372.15 ENSMUSG00000020372 ENSMUST00000136849 Rack1 protein_coding Interval_84222 chr19 8857214 8857949 + 0 NA Intergenic Intergenic 6813 ENSMUSG00000071656.7 ENSMUSG00000071656 ENSMUST00000096257 Lrrn4cl protein_coding Interval_81699 chr18 63666956 63667344 + 0 NA intron (ENSMUSG00000024583.3, intron 1 of 1) protein_coding-intron (ENSMUSG00000024583.3, intron 7 of 8) 41644 ENSMUSG00000024583.3 ENSMUSG00000024583 ENSMUST00000236253 Txnl1 protein_coding Interval_119444 chr4 137664409 137665624 + 0 NA intron (ENSMUSG00000041351.16, intron 1 of 4) protein_coding-intron (ENSMUSG00000041351.16, intron 1 of 8) 262 ENSMUSG00000041351.16 ENSMUSG00000041351 ENSMUST00000144059 Rap1gap protein_coding Interval_5405 chr1 88551188 88551663 + 0 NA promoter-TSS (ENSMUSG00000100798.1) lincRNA-promoter-TSS (ENSMUSG00000100798.1) -92 ENSMUSG00000100798.1 ENSMUSG00000100798 ENSMUST00000189394 Gm19589 lincRNA Interval_34791 chr12 11221435 11223179 + 0 NA promoter-TSS (ENSMUSG00000103287.1) TEC-promoter-TSS (ENSMUSG00000103287.1) -97 ENSMUSG00000103287.1 ENSMUSG00000103287 ENSMUST00000192736 1700034J04Rik TEC Interval_80338 chr18 39407831 39408262 + 0 NA Intergenic Intergenic -18621 ENSMUSG00000085289.1 ENSMUSG00000085289 ENSMUST00000135378 Gm15337 antisense Interval_167216 chr9 66254824 66255186 + 0 NA intron (ENSMUSG00000032380.9, intron 8 of 9) protein_coding-intron (ENSMUSG00000032380.9, intron 8 of 11) -95445 ENSMUSG00000038664.16 ENSMUSG00000038664 ENSMUST00000130854 Herc1 protein_coding Interval_125717 chr5 73518354 73518565 + 0 NA intron (ENSMUSG00000051674.15, intron 3 of 4) protein_coding-intron (ENSMUSG00000051674.15, intron 3 of 10) 25803 ENSMUSG00000051674.15 ENSMUSG00000051674 ENSMUST00000136268 Dcun1d4 protein_coding Interval_65645 chr16 24622084 24622353 + 0 NA intron (ENSMUSG00000033306.15, intron 5 of 6) protein_coding-intron (ENSMUSG00000033306.15, intron 5 of 12) 92824 ENSMUSG00000116875.1 ENSMUSG00000116875 ENSMUST00000231737 Morf4l1-ps1 processed_pseudogene Interval_99801 chr2 164979674 164980194 + 0 NA intron (ENSMUSG00000017740.17, intron 7 of 25) protein_coding-intron (ENSMUSG00000017740.17, intron 7 of 25) 11693 ENSMUSG00000017740.17 ENSMUSG00000017740 ENSMUST00000137302 Slc12a5 protein_coding Interval_70538 chr17 11760521 11760924 + 0 NA intron (ENSMUSG00000023826.16, intron 6 of 10) protein_coding-intron (ENSMUSG00000023826.16, intron 7 of 11) -28377 ENSMUSG00000104466.1 ENSMUSG00000104466 ENSMUST00000194203 Gm10513 TEC Interval_79820 chr18 35326322 35326608 + 0 NA intron (ENSMUSG00000024357.10, intron 4 of 8) protein_coding-intron (ENSMUSG00000024357.10, intron 5 of 9) 62436 ENSMUSG00000117876.1 ENSMUSG00000117876 ENSMUST00000236119 Gm50146 antisense Interval_57889 chr15 25011759 25012022 + 0 NA intron (ENSMUSG00000097452.2, intron 1 of 1) lincRNA-intron (ENSMUSG00000097452.2, intron 1 of 1) 6504 ENSMUSG00000097452.2 ENSMUSG00000097452 ENSMUST00000226189 Gm2824 lincRNA Interval_50174 chr14 8608401 8610361 + 0 NA intron (ENSMUSG00000021747.12, intron 4 of 12) protein_coding-intron (ENSMUSG00000021747.12, intron 4 of 15) 56858 ENSMUSG00000021747.12 ENSMUSG00000021747 ENSMUST00000225744 4930452B06Rik protein_coding Interval_172682 chrX 42074683 42075223 + 0 NA intron (ENSMUSG00000025860.15, intron 1 of 6) protein_coding-intron (ENSMUSG00000025860.15, intron 1 of 6) 15032 ENSMUSG00000025860.15 ENSMUSG00000025860 ENSMUST00000026978 Xiap protein_coding Interval_171307 chr9 116252922 116253955 + 0 NA Intergenic Intergenic 34636 ENSMUSG00000111324.1 ENSMUSG00000111324 ENSMUST00000217302 Gm31410 lincRNA Interval_106137 chr3 93580664 93581269 + 0 NA Intergenic Intergenic 20239 ENSMUSG00000041959.14 ENSMUSG00000041959 ENSMUST00000170612 S100a10 protein_coding Interval_91859 chr2 50525011 50525426 + 0 NA Intergenic Intergenic -2231 ENSMUSG00000083449.1 ENSMUSG00000083449 ENSMUST00000122240 Gm13487 processed_pseudogene Interval_94741 chr2 93910881 93911572 + 0 NA Intergenic Intergenic 29652 ENSMUSG00000083009.1 ENSMUSG00000083009 ENSMUST00000121653 Gm1335 processed_pseudogene Interval_51077 chr14 22058555 22059180 + 0 NA intron (ENSMUSG00000063458.13, intron 2 of 3) protein_coding-intron (ENSMUSG00000063458.13, intron 2 of 6) -22764 ENSMUSG00000114205.1 ENSMUSG00000114205 ENSMUST00000225573 Gm7480 antisense Interval_127407 chr5 103765323 103766117 + 0 NA intron (ENSMUSG00000029313.18, intron 1 of 12) protein_coding-intron (ENSMUSG00000029313.18, intron 1 of 19) 11156 ENSMUSG00000029313.18 ENSMUSG00000029313 ENSMUST00000152145 Aff1 protein_coding Interval_55544 chr14 91467591 91467807 + 0 NA Intergenic Intergenic 180140 ENSMUSG00000115368.1 ENSMUSG00000115368 ENSMUST00000227213 Gm48942 lincRNA Interval_63439 chr15 101097928 101098654 + 0 NA Intergenic Intergenic -18158 ENSMUSG00000047034.10 ENSMUSG00000047034 ENSMUST00000231208 Ankrd33 protein_coding Interval_136191 chr6 51925745 51925947 + 0 NA intron (ENSMUSG00000059182.7, intron 4 of 12) protein_coding-intron (ENSMUSG00000059182.7, intron 4 of 12) -53917 ENSMUSG00000059182.7 ENSMUSG00000059182 ENSMUST00000203313 Skap2 protein_coding Interval_9931 chr1 164187668 164187896 + 0 NA intron (ENSMUSG00000026579.8, intron 11 of 24) protein_coding-intron (ENSMUSG00000026579.8, intron 11 of 24) 21203 ENSMUSG00000089790.1 ENSMUSG00000089790 ENSMUST00000162889 Gm16588 processed_pseudogene Interval_82185 chr18 68547432 68548351 + 0 NA Intergenic Intergenic -11531 ENSMUSG00000117811.1 ENSMUSG00000117811 ENSMUST00000238121 Gm29677 lincRNA Interval_97710 chr2 143084917 143085134 + 0 NA Intergenic Intergenic 6552 ENSMUSG00000027416.2 ENSMUSG00000027416 ENSMUST00000028902 Otor protein_coding Interval_44972 chr13 51062927 51063487 + 0 NA Intergenic Intergenic 49121 ENSMUSG00000084609.2 ENSMUSG00000084609 ENSMUST00000122660 Gm22199 misc_RNA Interval_18178 chr10 83332430 83332915 + 0 NA promoter-TSS (ENSMUSG00000112577.1) processed_pseudogene-promoter-TSS (ENSMUSG00000112577.1) -52 ENSMUSG00000112577.1 ENSMUSG00000112577 ENSMUST00000218560 Gm47170 processed_pseudogene Interval_27817 chr11 70182224 70182848 + 0 NA Intergenic Intergenic 13226 ENSMUSG00000000318.16 ENSMUSG00000000318 ENSMUST00000153959 Clec10a protein_coding Interval_122820 chr5 25753586 25754398 + 0 NA Intergenic Intergenic -6047 ENSMUSG00000056367.14 ENSMUSG00000056367 ENSMUST00000198693 Actr3b protein_coding Interval_168904 chr9 88493749 88493985 + 0 NA Intergenic Intergenic -12643 ENSMUSG00000032423.12 ENSMUSG00000032423 ENSMUST00000172508 Syncrip protein_coding Interval_47573 chr13 89279798 89280103 + 0 NA intron (ENSMUSG00000034488.14, intron 9 of 10) protein_coding-intron (ENSMUSG00000034488.14, intron 8 of 9) 298469 ENSMUSG00000094463.2 ENSMUSG00000094463 ENSMUST00000178288 Gm8546 processed_pseudogene Interval_74608 chr17 53688857 53690105 + 0 NA promoter-TSS (ENSMUSG00000023940.14) protein_coding-promoter-TSS (ENSMUSG00000023940.14) -203 ENSMUSG00000023940.14 ENSMUSG00000023940 ENSMUST00000146019 Sgo1 protein_coding Interval_131831 chr5 140189317 140190057 + 0 NA intron (ENSMUSG00000029554.15, intron 3 of 3) protein_coding-intron (ENSMUSG00000029554.15, intron 11 of 17) -14769 ENSMUSG00000029554.15 ENSMUSG00000029554 ENSMUST00000132832 Mad1l1 protein_coding Interval_139933 chr6 112884950 112885939 + 0 NA intron (ENSMUSG00000030257.16, intron 1 of 21) protein_coding-intron (ENSMUSG00000030257.16, intron 1 of 9) -55985 ENSMUSG00000030257.16 ENSMUSG00000030257 ENSMUST00000143475 Srgap3 protein_coding Interval_158727 chr8 85583706 85583956 + 0 NA Intergenic Intergenic -16001 ENSMUSG00000110341.1 ENSMUSG00000110341 ENSMUST00000210575 Gm45424 TEC Interval_61130 chr15 79421828 79422399 + 0 NA promoter-TSS (ENSMUSG00000022433.20) protein_coding-promoter-TSS (ENSMUSG00000022433.20) -5107 ENSMUSG00000085802.1 ENSMUSG00000085802 ENSMUST00000135583 Gm16059 antisense Interval_137790 chr6 82527632 82528358 + 0 NA intron (ENSMUSG00000030043.11, intron 2 of 4) protein_coding-intron (ENSMUSG00000030043.11, intron 3 of 5) 125661 ENSMUSG00000030043.11 ENSMUSG00000030043 ENSMUST00000203775 Tacr1 protein_coding Interval_89794 chr2 25482963 25483565 + 0 NA Intergenic Intergenic 10168 ENSMUSG00000026943.12 ENSMUSG00000026943 ENSMUST00000114245 Lcn12 protein_coding Interval_155354 chr8 32213755 32214098 + 0 NA intron (ENSMUSG00000062991.9, intron 1 of 12) protein_coding-intron (ENSMUSG00000062991.9, intron 1 of 8) 27797 ENSMUSG00000089370.1 ENSMUSG00000089370 ENSMUST00000158745 Gm22140 snRNA Interval_108727 chr3 130754478 130755421 + 0 NA intron (ENSMUSG00000105789.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000105789.1, intron 1 of 1) -2512 ENSMUSG00000106260.1 ENSMUSG00000106260 ENSMUST00000197278 Gm43524 processed_pseudogene Interval_112128 chr4 34868893 34869549 + 0 NA intron (ENSMUSG00000039967.14, intron 1 of 7) protein_coding-intron (ENSMUSG00000039967.14, intron 1 of 7) 13709 ENSMUSG00000039967.14 ENSMUSG00000039967 ENSMUST00000047950 Zfp292 protein_coding Interval_40962 chr12 110283763 110285482 + 0 NA Intergenic Intergenic 5554 ENSMUSG00000075707.5 ENSMUSG00000075707 ENSMUST00000097228 Dio3 protein_coding Interval_107095 chr3 103491557 103492803 + 0 NA Intergenic Intergenic -46380 ENSMUSG00000065029.1 ENSMUSG00000065029 ENSMUST00000083095 Gm25199 snRNA Interval_45901 chr13 58979713 58980208 + 0 NA intron (ENSMUSG00000055254.15, intron 12 of 17) protein_coding-intron (ENSMUSG00000055254.15, intron 12 of 17) 98336 ENSMUSG00000114896.1 ENSMUSG00000114896 ENSMUST00000224384 Gm34245 TEC Interval_137176 chr6 69244866 69245710 + 0 NA Intergenic Intergenic -1600 ENSMUSG00000073028.4 ENSMUSG00000073028 ENSMUST00000196201 Igkv4-71 IG_V_gene Interval_23157 chr11 20221530 20222410 + 0 NA intron (ENSMUSG00000020149.17, intron 3 of 3) protein_coding-intron (ENSMUSG00000020149.17, intron 3 of 5) 20368 ENSMUSG00000020149.17 ENSMUSG00000020149 ENSMUST00000152728 Rab1a protein_coding Interval_122675 chr5 24601673 24603225 + 0 NA promoter-TSS (ENSMUSG00000028949.13) protein_coding-promoter-TSS (ENSMUSG00000028949.13) 10335 ENSMUSG00000076387.1 ENSMUSG00000076387 ENSMUST00000102432 Mir671 miRNA Interval_128558 chr5 114012296 114012648 + 0 NA intron (ENSMUSG00000042096.15, intron 1 of 3) protein_coding-intron (ENSMUSG00000042096.15, intron 2 of 9) 2581 ENSMUSG00000042096.15 ENSMUSG00000042096 ENSMUST00000162214 Dao protein_coding Interval_39472 chr12 88096719 88097179 + 0 NA Intergenic Intergenic 7815 ENSMUSG00000071207.4 ENSMUSG00000071207 ENSMUST00000076538 Gm8587 processed_pseudogene Interval_82953 chr18 79973498 79973694 + 0 NA Intergenic Intergenic 14590 ENSMUSG00000117813.1 ENSMUSG00000117813 ENSMUST00000237811 Gm5823 processed_pseudogene Interval_33454 chr11 116625560 116626014 + 0 NA intron (ENSMUSG00000020806.15, intron 1 of 18) protein_coding-intron (ENSMUSG00000020806.15, intron 1 of 18) -23192 ENSMUSG00000020806.15 ENSMUSG00000020806 ENSMUST00000126819 Rhbdf2 protein_coding Interval_167888 chr9 73557849 73558529 + 0 NA intron (ENSMUSG00000062151.13, intron 24 of 32) protein_coding-intron (ENSMUSG00000062151.13, intron 23 of 31) -4319 ENSMUSG00000103832.1 ENSMUSG00000103832 ENSMUST00000195250 Gm37611 TEC Interval_60273 chr15 71948641 71949084 + 0 NA intron (ENSMUSG00000079022.10, intron 5 of 52) protein_coding-intron (ENSMUSG00000079022.10, intron 16 of 63) 5537 ENSMUSG00000079022.10 ENSMUSG00000079022 ENSMUST00000162081 Col22a1 protein_coding Interval_32528 chr11 108166491 108166989 + 0 NA intron (ENSMUSG00000050965.14, intron 3 of 16) protein_coding-intron (ENSMUSG00000050965.14, intron 3 of 16) -15110 ENSMUSG00000084978.1 ENSMUSG00000084978 ENSMUST00000153899 Gm11655 antisense Interval_139588 chr6 101733058 101733311 + 0 NA Intergenic Intergenic -41065 ENSMUSG00000052236.7 ENSMUSG00000052236 ENSMUST00000064002 Gm9871 lincRNA Interval_150214 chr7 108183686 108185916 + 0 NA Intergenic Intergenic -12059 ENSMUSG00000096068.1 ENSMUSG00000096068 ENSMUST00000072035 Olfr486 protein_coding Interval_14278 chr10 30301743 30302429 + 0 NA Intergenic Intergenic -70832 ENSMUSG00000111047.1 ENSMUSG00000111047 ENSMUST00000213206 Gm4780 transcribed_processed_pseudogene Interval_152853 chr7 138834705 138835464 + 0 NA TTS (ENSMUSG00000041775.7) protein_coding-TTS (ENSMUSG00000041775.7) 11189 ENSMUSG00000041775.7 ENSMUSG00000041775 ENSMUST00000118810 Mapk1ip1 protein_coding Interval_117469 chr4 123949781 123950562 + 0 NA Intergenic Intergenic 23937 ENSMUSG00000082515.1 ENSMUSG00000082515 ENSMUST00000118389 Gm12902 processed_pseudogene Interval_12713 chr10 4449376 4449689 + 0 NA exon (ENSMUSG00000061759.15, exon 3 of 3) protein_coding-exon (ENSMUSG00000061759.15, exon 3 of 3) 16892 ENSMUSG00000061759.15 ENSMUSG00000061759 ENSMUST00000131636 Armt1 protein_coding Interval_158074 chr8 78565442 78566752 + 0 NA intron (ENSMUSG00000031684.11, intron 4 of 10) protein_coding-intron (ENSMUSG00000031684.11, intron 4 of 11) -38197 ENSMUSG00000110244.1 ENSMUSG00000110244 ENSMUST00000211775 Gm2253 processed_pseudogene Interval_125973 chr5 76365450 76365719 + 0 NA Intergenic Intergenic -1796 ENSMUSG00000029236.4 ENSMUSG00000029236 ENSMUST00000031146 Nmu protein_coding Interval_128281 chr5 112256445 112256663 + 0 NA intron (ENSMUSG00000029343.17, intron 1 of 5) protein_coding-intron (ENSMUSG00000029343.17, intron 1 of 5) 709 ENSMUSG00000029343.17 ENSMUSG00000029343 ENSMUST00000112375 Crybb1 protein_coding Interval_103188 chr3 36490867 36491411 + 0 NA Intergenic Intergenic 15202 ENSMUSG00000027713.6 ENSMUSG00000027713 ENSMUST00000029268 1810062G17Rik protein_coding Interval_138402 chr6 87887446 87888332 + 0 NA promoter-TSS (ENSMUSG00000030058.17) protein_coding-promoter-TSS (ENSMUSG00000030058.17) -6054 ENSMUSG00000030058.17 ENSMUSG00000030058 ENSMUST00000127614 Copg1 protein_coding Interval_162480 chr8 129267844 129268702 + 0 NA intron (ENSMUSG00000110605.1, intron 2 of 2) lincRNA-intron (ENSMUSG00000110605.1, intron 2 of 2) 4632 ENSMUSG00000110605.1 ENSMUSG00000110605 ENSMUST00000212145 Gm32856 lincRNA Interval_56368 chr14 118136518 118137727 + 0 NA promoter-TSS (ENSMUSG00000022131.3) protein_coding-promoter-TSS (ENSMUSG00000022131.3) -36 ENSMUSG00000022131.3 ENSMUSG00000022131 ENSMUST00000022728 Gpr180 protein_coding Interval_10779 chr1 174623003 174623593 + 0 NA intron (ENSMUSG00000028354.13, intron 2 of 3) protein_coding-intron (ENSMUSG00000028354.13, intron 6 of 17) 13489 ENSMUSG00000028354.13 ENSMUSG00000028354 ENSMUST00000193905 Fmn2 protein_coding Interval_160202 chr8 107107869 107111205 + 0 NA Intergenic Intergenic -9573 ENSMUSG00000102271.1 ENSMUSG00000102271 ENSMUST00000193420 C630050I24Rik TEC Interval_138556 chr6 89291360 89292255 + 0 NA Intergenic Intergenic -12823 ENSMUSG00000097816.1 ENSMUSG00000097816 ENSMUST00000181258 Gm26811 antisense Interval_120444 chr4 148654052 148655492 + 0 NA intron (ENSMUSG00000070577.5, intron 2 of 10) protein_coding-intron (ENSMUSG00000070577.5, intron 2 of 10) 11455 ENSMUSG00000070577.5 ENSMUSG00000070577 ENSMUST00000105698 Gm572 protein_coding Interval_104361 chr3 64121312 64121742 + 0 NA intron (ENSMUSG00000043897.13, intron 4 of 5) protein_coding-intron (ENSMUSG00000043897.13, intron 3 of 4) 11892 ENSMUSG00000089039.1 ENSMUSG00000089039 ENSMUST00000158414 Gm22165 snRNA Interval_169137 chr9 94071112 94071391 + 0 NA Intergenic Intergenic -68211 ENSMUSG00000111352.1 ENSMUSG00000111352 ENSMUST00000217499 Gm5369 processed_pseudogene Interval_166992 chr9 64360206 64362087 + 0 NA Intergenic Intergenic -19889 ENSMUSG00000032396.17 ENSMUSG00000032396 ENSMUST00000128129 Dis3l protein_coding Interval_91118 chr2 35233045 35233702 + 0 NA Intergenic Intergenic 8840 ENSMUSG00000084768.2 ENSMUSG00000084768 ENSMUST00000124489 Gm13605 lincRNA Interval_42660 chr13 17766991 17768015 + 0 NA intron (ENSMUSG00000041297.8, intron 2 of 13) protein_coding-intron (ENSMUSG00000041297.8, intron 2 of 13) -10178 ENSMUSG00000113140.1 ENSMUSG00000113140 ENSMUST00000220696 Gm48624 TEC Interval_148488 chr7 81690631 81691722 + 0 NA intron (ENSMUSG00000025813.14, intron 1 of 2) protein_coding-intron (ENSMUSG00000025813.14, intron 1 of 8) 1711 ENSMUSG00000025813.14 ENSMUSG00000025813 ENSMUST00000208107 Homer2 protein_coding Interval_81148 chr18 54985590 54986036 + 0 NA intron (ENSMUSG00000052713.9, intron 2 of 9) protein_coding-intron (ENSMUSG00000052713.9, intron 2 of 9) -4452 ENSMUSG00000096948.2 ENSMUSG00000096948 ENSMUST00000181765 Gm4221 antisense Interval_49524 chr13 112687934 112688714 + 0 NA intron (ENSMUSG00000047789.5, intron 4 of 6) protein_coding-intron (ENSMUSG00000047789.5, intron 3 of 14) -2628 ENSMUSG00000114438.1 ENSMUSG00000114438 ENSMUST00000224584 Gm47827 antisense Interval_157005 chr8 64341528 64344000 + 0 NA Intergenic Intergenic 74336 ENSMUSG00000109579.1 ENSMUSG00000109579 ENSMUST00000211285 Gm35521 lincRNA Interval_85531 chr19 28134709 28135315 + 0 NA Intergenic Intergenic 11291 ENSMUSG00000117862.1 ENSMUSG00000117862 ENSMUST00000236360 Gm35781 processed_pseudogene Interval_157027 chr8 64616431 64617321 + 0 NA TTS (ENSMUSG00000037852.8) protein_coding-TTS (ENSMUSG00000037852.8) 5121 ENSMUSG00000037852.8 ENSMUSG00000037852 ENSMUST00000211312 Cpe protein_coding Interval_19981 chr10 111643544 111643772 + 0 NA Intergenic Intergenic 6154 ENSMUSG00000112357.1 ENSMUSG00000112357 ENSMUST00000217989 Gm47864 processed_pseudogene Interval_103935 chr3 55131023 55132529 + 0 NA intron (ENSMUSG00000036580.15, intron 8 of 8) protein_coding-intron (ENSMUSG00000036580.15, intron 8 of 8) -10512 ENSMUSG00000048655.17 ENSMUSG00000048655 ENSMUST00000161120 Ccdc169 protein_coding Interval_18741 chr10 89832301 89832648 + 0 NA Intergenic Intergenic -11028 ENSMUSG00000093967.1 ENSMUSG00000093967 ENSMUST00000179942 Gm26180 snRNA Interval_149217 chr7 96352704 96353485 + 0 NA intron (ENSMUSG00000048078.16, intron 1 of 32) protein_coding-intron (ENSMUSG00000048078.16, intron 1 of 32) -11130 ENSMUSG00000085751.1 ENSMUSG00000085751 ENSMUST00000137193 Gm15412 antisense Interval_73748 chr17 43196593 43198415 + 0 NA Intergenic Intergenic -39238 ENSMUSG00000117011.1 ENSMUSG00000117011 ENSMUST00000232795 E130008D07Rik lincRNA Interval_115088 chr4 89474808 89475441 + 0 NA Intergenic Intergenic 29905 ENSMUSG00000098669.1 ENSMUSG00000098669 ENSMUST00000183666 Gm27580 misc_RNA Interval_171933 chr9 122692295 122692497 + 0 NA intron (ENSMUSG00000111068.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000111068.1, intron 1 of 1) 2767 ENSMUSG00000111068.1 ENSMUSG00000111068 ENSMUST00000215101 Gm35501 lincRNA Interval_149995 chr7 104314749 104316772 + 0 NA promoter-TSS (ENSMUSG00000066258.13) protein_coding-promoter-TSS (ENSMUSG00000066258.13) 741 ENSMUSG00000087175.7 ENSMUSG00000087175 ENSMUST00000139019 Gm15133 antisense Interval_19418 chr10 99095267 99095694 + 0 NA Intergenic Intergenic -12304 ENSMUSG00000019952.15 ENSMUSG00000019952 ENSMUST00000162847 Poc1b protein_coding Interval_168204 chr9 77953251 77953550 + 0 NA intron (ENSMUSG00000032349.13, intron 1 of 2) protein_coding-intron (ENSMUSG00000032349.13, intron 1 of 7) 35966 ENSMUSG00000032349.13 ENSMUSG00000032349 ENSMUST00000134072 Elovl5 protein_coding Interval_67512 chr16 50072429 50073204 + 0 NA Intergenic Intergenic -38257 ENSMUSG00000098028.1 ENSMUSG00000098028 ENSMUST00000182962 Gm8824 processed_pseudogene Interval_75700 chr17 70747492 70748506 + 0 NA intron (ENSMUSG00000097282.1, intron 2 of 2) protein_coding-intron (ENSMUSG00000003279.17, intron 9 of 14) 7583 ENSMUSG00000097282.1 ENSMUSG00000097282 ENSMUST00000181546 5031415H12Rik antisense Interval_146878 chr7 54548384 54548643 + 0 NA Intergenic Intergenic 62685 ENSMUSG00000109050.1 ENSMUSG00000109050 ENSMUST00000207666 Gm6290 processed_pseudogene Interval_110542 chr4 3782701 3783692 + 0 NA intron (ENSMUSG00000042228.14, intron 4 of 4) protein_coding-intron (ENSMUSG00000042228.14, intron 12 of 12) 13387 ENSMUSG00000077271.1 ENSMUSG00000077271 ENSMUST00000104083 Gm22781 snoRNA Interval_66210 chr16 32345923 32346158 + 0 NA intron (ENSMUSG00000053774.9, intron 1 of 2) protein_coding-intron (ENSMUSG00000053774.9, intron 1 of 10) 13775 ENSMUSG00000053774.9 ENSMUSG00000053774 ENSMUST00000232137 Ubxn7 protein_coding Interval_116861 chr4 117793465 117794563 + 0 NA Intergenic Intergenic -28366 ENSMUSG00000048626.5 ENSMUSG00000048626 ENSMUST00000062747 Klf17 protein_coding Interval_82708 chr18 76105031 76106058 + 0 NA intron (ENSMUSG00000044646.15, intron 1 of 2) protein_coding-intron (ENSMUSG00000044646.15, intron 3 of 4) -7073 ENSMUSG00000117797.1 ENSMUSG00000117797 ENSMUST00000236092 2900057B20Rik antisense Interval_129644 chr5 121506673 121508002 + 0 NA intron (ENSMUSG00000029452.18, intron 11 of 11) protein_coding-intron (ENSMUSG00000029452.18, intron 11 of 11) 3824 ENSMUSG00000104999.1 ENSMUSG00000104999 ENSMUST00000196484 4930477O15Rik TEC Interval_52298 chr14 44103068 44103326 + 0 NA exon (ENSMUSG00000072596.4, exon 2 of 2) protein_coding-exon (ENSMUSG00000072596.4, exon 2 of 2) 543 ENSMUSG00000072596.4 ENSMUSG00000072596 ENSMUST00000074839 Ear2 protein_coding Interval_52977 chr14 52528677 52529133 + 0 NA Intergenic Intergenic 11971 ENSMUSG00000104788.1 ENSMUSG00000104788 ENSMUST00000199916 Gm36448 unprocessed_pseudogene Interval_19487 chr10 100126107 100126559 + 0 NA Intergenic Intergenic -13168 ENSMUSG00000096586.1 ENSMUSG00000096586 ENSMUST00000103855 Gm22918 miRNA Interval_37788 chr12 71988704 71990104 + 0 NA intron (ENSMUSG00000034574.10, intron 25 of 25) protein_coding-intron (ENSMUSG00000034574.10, intron 25 of 25) 59855 ENSMUSG00000114155.1 ENSMUSG00000114155 ENSMUST00000221336 Gm7986 processed_pseudogene Interval_112341 chr4 40702710 40704506 + 0 NA promoter-TSS (ENSMUSG00000028411.15) protein_coding-promoter-TSS (ENSMUSG00000028411.15) -892 ENSMUSG00000028411.15 ENSMUSG00000028411 ENSMUST00000155710 Aptx protein_coding Interval_5852 chr1 92611004 92611754 + 0 NA exon (ENSMUSG00000063583.6, exon 3 of 3) protein_coding-exon (ENSMUSG00000063583.6, exon 3 of 3) 5597 ENSMUSG00000063583.6 ENSMUSG00000063583 ENSMUST00000079790 Olfr1410 protein_coding Interval_120900 chr4 151420510 151420845 + 0 NA intron (ENSMUSG00000014592.21, intron 5 of 24) protein_coding-intron (ENSMUSG00000014592.21, intron 5 of 23) 44207 ENSMUSG00000085593.1 ENSMUSG00000085593 ENSMUST00000129097 4930589P08Rik antisense Interval_97241 chr2 132555869 132556167 + 0 NA intron (ENSMUSG00000027346.15, intron 5 of 18) protein_coding-intron (ENSMUSG00000027346.15, intron 5 of 17) 22217 ENSMUSG00000027346.15 ENSMUSG00000027346 ENSMUST00000131617 Gpcpd1 protein_coding Interval_36622 chr12 51577931 51578707 + 0 NA Intergenic Intergenic -15060 ENSMUSG00000020953.17 ENSMUSG00000020953 ENSMUST00000220173 Coch protein_coding Interval_161597 chr8 121474294 121475621 + 0 NA intron (ENSMUSG00000092329.1, intron 1 of 15) protein_coding-intron (ENSMUSG00000092329.1, intron 1 of 15) 39977 ENSMUSG00000097438.1 ENSMUSG00000097438 ENSMUST00000181666 Gm26784 lincRNA Interval_86299 chr19 38486072 38486469 + 0 NA intron (ENSMUSG00000024998.17, intron 1 of 32) protein_coding-intron (ENSMUSG00000024998.17, intron 1 of 2) -13068 ENSMUSG00000088940.1 ENSMUSG00000088940 ENSMUST00000158315 Gm24930 misc_RNA Interval_174695 chrX 163265925 163266328 + 0 NA Intergenic Intergenic -6786 ENSMUSG00000082598.1 ENSMUSG00000082598 ENSMUST00000122403 Gm15212 processed_pseudogene Interval_171894 chr9 122166142 122168626 + 0 NA TTS (ENSMUSG00000038145.17) protein_coding-TTS (ENSMUSG00000038145.17) 24935 ENSMUSG00000111434.1 ENSMUSG00000111434 ENSMUST00000213905 Gm47121 sense_intronic Interval_44737 chr13 48104477 48105504 + 0 NA intron (ENSMUSG00000097622.2, intron 1 of 2) antisense-intron (ENSMUSG00000097622.2, intron 1 of 2) 73217 ENSMUSG00000114810.1 ENSMUSG00000114810 ENSMUST00000223995 Gm36101 lincRNA Interval_41104 chr12 111193435 111194265 + 0 NA intron (ENSMUSG00000021277.16, intron 2 of 4) protein_coding-intron (ENSMUSG00000021277.16, intron 1 of 11) -9359 ENSMUSG00000083193.1 ENSMUSG00000083193 ENSMUST00000121608 4930595D18Rik protein_coding Interval_98266 chr2 150656918 150658122 + 0 NA intron (ENSMUSG00000027452.11, intron 2 of 4) protein_coding-intron (ENSMUSG00000027452.11, intron 2 of 13) -9974 ENSMUSG00000087406.1 ENSMUSG00000087406 ENSMUST00000145525 E130215H24Rik processed_transcript Interval_110876 chr4 9363811 9364146 + 0 NA intron (ENSMUSG00000041216.15, intron 2 of 3) protein_coding-intron (ENSMUSG00000041216.15, intron 3 of 5) -76587 ENSMUSG00000086233.1 ENSMUSG00000086233 ENSMUST00000142744 Gm11816 antisense Interval_169090 chr9 92196063 92196343 + 0 NA intron (ENSMUSG00000095654.2, intron 1 of 6) protein_coding-intron (ENSMUSG00000095654.2, intron 1 of 6) 3267 ENSMUSG00000095654.2 ENSMUSG00000095654 ENSMUST00000179751 Plscr5 protein_coding Interval_36079 chr12 35256590 35256858 + 0 NA Intergenic Intergenic -52167 ENSMUSG00000105488.1 ENSMUSG00000105488 ENSMUST00000199843 Gm44396 miRNA Interval_113759 chr4 58406313 58407166 + 0 NA Intergenic Intergenic 34359 ENSMUSG00000093293.1 ENSMUSG00000093293 ENSMUST00000175552 Mir3095 miRNA Interval_147446 chr7 67337506 67338372 + 0 NA intron (ENSMUSG00000030557.17, intron 2 of 11) protein_coding-intron (ENSMUSG00000030557.17, intron 2 of 10) 33041 ENSMUSG00000109363.1 ENSMUSG00000109363 ENSMUST00000207911 Gm44668 TEC Interval_100027 chr2 166601116 166602080 + 0 NA intron (ENSMUSG00000039621.13, intron 2 of 3) protein_coding-intron (ENSMUSG00000039621.13, intron 12 of 39) 53544 ENSMUSG00000093063.1 ENSMUSG00000093063 ENSMUST00000175322 Gm23152 rRNA Interval_95030 chr2 103310337 103311964 + 0 NA Intergenic Intergenic -8230 ENSMUSG00000012350.15 ENSMUSG00000012350 ENSMUST00000128546 Ehf protein_coding Interval_51612 chr14 30699702 30700260 + 0 NA Intergenic Intergenic -16510 ENSMUSG00000006527.16 ENSMUSG00000006527 ENSMUST00000227445 Sfmbt1 protein_coding Interval_93382 chr2 72534259 72534714 + 0 NA Intergenic Intergenic -10726 ENSMUSG00000081538.1 ENSMUSG00000081538 ENSMUST00000118906 Rps13-ps8 processed_pseudogene Interval_112604 chr4 43519658 43520312 + 0 NA promoter-TSS (ENSMUSG00000028464.16) protein_coding-promoter-TSS (ENSMUSG00000028464.16) 3780 ENSMUSG00000028464.16 ENSMUSG00000028464 ENSMUST00000150592 Tpm2 protein_coding Interval_30001 chr11 88627233 88628064 + 0 NA intron (ENSMUSG00000069769.13, intron 5 of 5) protein_coding-intron (ENSMUSG00000069769.13, intron 5 of 13) -37501 ENSMUSG00000069769.13 ENSMUSG00000069769 ENSMUST00000126293 Msi2 protein_coding Interval_98821 chr2 155319487 155320585 + 0 NA intron (ENSMUSG00000038383.16, intron 6 of 11) protein_coding-intron (ENSMUSG00000038383.16, intron 6 of 11) -36781 ENSMUSG00000076216.1 ENSMUSG00000076216 ENSMUST00000102261 Mir695 miRNA Interval_90243 chr2 29251298 29253762 + 0 NA exon (ENSMUSG00000079499.9, exon 1 of 5) processed_transcript-exon (ENSMUSG00000079499.9, exon 1 of 5) 463 ENSMUSG00000079499.9 ENSMUSG00000079499 ENSMUST00000028141 6530402F18Rik processed_transcript Interval_114627 chr4 83290016 83290216 + 0 NA intron (ENSMUSG00000038172.14, intron 2 of 19) protein_coding-intron (ENSMUSG00000038172.14, intron 2 of 6) -4206 ENSMUSG00000096801.1 ENSMUSG00000096801 ENSMUST00000083017 Gm23412 snRNA Interval_140687 chr6 120581603 120581928 + 0 NA Intergenic Intergenic -1589 ENSMUSG00000107580.1 ENSMUSG00000107580 ENSMUST00000204159 Gm44124 TEC Interval_8639 chr1 145637566 145638146 + 0 NA Intergenic Intergenic -311165 ENSMUSG00000103055.1 ENSMUSG00000103055 ENSMUST00000194549 Gm38269 TEC Interval_122777 chr5 25367722 25368342 + 0 NA promoter-TSS (ENSMUSG00000106457.1) TEC-promoter-TSS (ENSMUSG00000106457.1) -988 ENSMUSG00000106457.1 ENSMUSG00000106457 ENSMUST00000198731 Gm42585 TEC Interval_167713 chr9 72242925 72243649 + 0 NA Intergenic Intergenic -12981 ENSMUSG00000099190.1 ENSMUSG00000099190 ENSMUST00000184383 Gm27188 lincRNA Interval_91255 chr2 36630108 36630282 + 0 NA Intergenic Intergenic -9846 ENSMUSG00000059251.1 ENSMUSG00000059251 ENSMUST00000076850 Olfr345 protein_coding Interval_42809 chr13 19901812 19903001 + 0 NA Intergenic Intergenic -78149 ENSMUSG00000053101.3 ENSMUSG00000053101 ENSMUST00000221268 Gpr141 protein_coding Interval_61275 chr15 80471980 80472683 + 0 NA intron (ENSMUSG00000050439.7, intron 6 of 6) protein_coding-intron (ENSMUSG00000050439.7, intron 5 of 5) -3561 ENSMUSG00000116345.1 ENSMUSG00000116345 ENSMUST00000230279 Gm19141 processed_pseudogene Interval_17744 chr10 79860970 79861967 + 0 NA promoter-TSS (ENSMUSG00000006498.16) protein_coding-promoter-TSS (ENSMUSG00000006498.16) -1119 ENSMUSG00000098562.1 ENSMUSG00000098562 ENSMUST00000184090 Mir6910 miRNA Interval_150001 chr7 104489183 104489534 + 0 NA intron (ENSMUSG00000057596.13, intron 1 of 7) protein_coding-intron (ENSMUSG00000057596.13, intron 1 of 7) -5932 ENSMUSG00000057596.13 ENSMUSG00000057596 ENSMUST00000141063 Trim30d protein_coding Interval_172464 chrX 20792091 20793467 + 0 NA Intergenic Intergenic 7657 ENSMUSG00000065314.1 ENSMUSG00000065314 ENSMUST00000083380 Gm26065 snRNA Interval_3284 chr1 55575726 55576545 + 0 NA intron (ENSMUSG00000038349.10, intron 1 of 5) protein_coding-intron (ENSMUSG00000038349.10, intron 1 of 5) 16675 ENSMUSG00000102831.1 ENSMUSG00000102831 ENSMUST00000193032 Gm37382 TEC Interval_116335 chr4 109930572 109931060 + 0 NA intron (ENSMUSG00000010517.7, intron 17 of 18) protein_coding-intron (ENSMUSG00000010517.7, intron 17 of 18) 46997 ENSMUSG00000085256.1 ENSMUSG00000085256 ENSMUST00000124754 Dmrta2os antisense Interval_173515 chrX 97450119 97450458 + 0 NA Intergenic Intergenic -73116 ENSMUSG00000034457.10 ENSMUSG00000034457 ENSMUST00000126609 Eda2r protein_coding Interval_170308 chr9 106832772 106832989 + 0 NA intron (ENSMUSG00000040325.16, intron 2 of 22) protein_coding-intron (ENSMUSG00000040325.16, intron 2 of 22) -18006 ENSMUSG00000040325.16 ENSMUSG00000040325 ENSMUST00000163657 Dcaf1 protein_coding Interval_66272 chr16 32784652 32785551 + 0 NA TTS (ENSMUSG00000035638.14) protein_coding-TTS (ENSMUSG00000035638.14) 7564 ENSMUSG00000079620.13 ENSMUSG00000079620 ENSMUST00000131419 Muc4 protein_coding Interval_126396 chr5 87936755 87936947 + 0 NA intron (ENSMUSG00000099605.1, intron 2 of 4) antisense-intron (ENSMUSG00000099605.1, intron 2 of 4) 9040 ENSMUSG00000001622.15 ENSMUSG00000001622 ENSMUST00000148793 Csn3 protein_coding Interval_173973 chrX 119927002 119927633 + 0 NA promoter-TSS (ENSMUSG00000034732.4) protein_coding-promoter-TSS (ENSMUSG00000034732.4) 92 ENSMUSG00000034732.4 ENSMUSG00000034732 ENSMUST00000113366 Pabpc5 protein_coding Interval_144406 chr7 24965310 24965871 + 0 NA Intergenic Intergenic 4485 ENSMUSG00000098802.1 ENSMUSG00000098802 ENSMUST00000183435 Mir7046 miRNA Interval_155656 chr8 35703105 35703442 + 0 NA Intergenic Intergenic 16676 ENSMUSG00000110335.1 ENSMUSG00000110335 ENSMUST00000209585 1700015I17Rik lincRNA Interval_3543 chr1 59463597 59463979 + 0 NA Intergenic Intergenic -14286 ENSMUSG00000104502.1 ENSMUSG00000104502 ENSMUST00000195013 Gm37737 TEC Interval_85627 chr19 29156157 29156628 + 0 NA Intergenic Intergenic -3726 ENSMUSG00000068466.6 ENSMUSG00000068466 ENSMUST00000084171 Gm5518 processed_pseudogene Interval_84782 chr19 16608060 16608432 + 0 NA intron (ENSMUSG00000024697.4, intron 6 of 6) protein_coding-intron (ENSMUSG00000024697.4, intron 6 of 6) 32372 ENSMUSG00000046230.11 ENSMUSG00000046230 ENSMUST00000225764 Vps13a protein_coding Interval_41164 chr12 111574084 111575625 + 0 NA promoter-TSS (ENSMUSG00000096995.2) bidirectional_promoter_lncRNA-promoter-TSS (ENSMUSG00000096995.2) -514 ENSMUSG00000096995.2 ENSMUSG00000096995 ENSMUST00000221597 2810029C07Rik bidirectional_promoter_lncRNA Interval_51204 chr14 24945174 24945989 + 0 NA Intergenic Intergenic 36167 ENSMUSG00000072686.2 ENSMUSG00000072686 ENSMUST00000100826 Gm10398 lincRNA Interval_42887 chr13 21142282 21143071 + 0 NA exon (ENSMUSG00000045474.7, exon 1 of 1) protein_coding-exon (ENSMUSG00000045474.7, exon 1 of 1) 3191 ENSMUSG00000045474.7 ENSMUSG00000045474 ENSMUST00000055298 Olfr1368 protein_coding Interval_3616 chr1 60013958 60014387 + 0 NA intron (ENSMUSG00000026018.12, intron 4 of 10) protein_coding-intron (ENSMUSG00000026018.12, intron 4 of 10) 28950 ENSMUSG00000026018.12 ENSMUSG00000026018 ENSMUST00000186970 Ica1l protein_coding Interval_174631 chrX 160583770 160584771 + 0 NA intron (ENSMUSG00000031295.13, intron 23 of 27) protein_coding-intron (ENSMUSG00000031295.13, intron 28 of 32) -51225 ENSMUSG00000085695.1 ENSMUSG00000085695 ENSMUST00000151101 Gm15243 antisense Interval_69004 chr16 90072297 90073910 + 0 NA intron (ENSMUSG00000002489.16, intron 1 of 11) protein_coding-intron (ENSMUSG00000002489.16, intron 1 of 11) -16880 ENSMUSG00000116536.1 ENSMUSG00000116536 ENSMUST00000232386 Gm2805 processed_pseudogene Interval_31201 chr11 98862976 98864545 + 0 NA promoter-TSS (ENSMUSG00000038013.14) protein_coding-promoter-TSS (ENSMUSG00000038013.14) 6739 ENSMUSG00000088485.1 ENSMUSG00000088485 ENSMUST00000157860 Gm23640 snRNA Interval_158031 chr8 78147037 78147478 + 0 NA Intergenic Intergenic 39297 ENSMUSG00000109948.1 ENSMUSG00000109948 ENSMUST00000210236 Gm45288 processed_pseudogene Interval_68221 chr16 69295632 69296592 + 0 NA Intergenic Intergenic 296666 ENSMUSG00000116931.1 ENSMUSG00000116931 ENSMUST00000232625 Gm18496 processed_pseudogene Interval_38551 chr12 80082567 80084543 + 0 NA Intergenic Intergenic -2121 ENSMUSG00000111933.1 ENSMUSG00000111933 ENSMUST00000218323 Gm36660 lincRNA Interval_167650 chr9 71532325 71532861 + 0 NA intron (ENSMUSG00000041361.13, intron 9 of 11) protein_coding-intron (ENSMUSG00000041361.13, intron 10 of 12) -46688 ENSMUSG00000032199.13 ENSMUSG00000032199 ENSMUST00000233263 Polr2m protein_coding Interval_115968 chr4 106653177 106653500 + 0 NA TTS (ENSMUSG00000043572.7) protein_coding-TTS (ENSMUSG00000043572.7) 2235 ENSMUSG00000043572.7 ENSMUSG00000043572 ENSMUST00000058905 Pars2 protein_coding Interval_165466 chr9 48471775 48473369 + 0 NA promoter-TSS (ENSMUSG00000032026.7) protein_coding-promoter-TSS (ENSMUSG00000032026.7) 8018 ENSMUSG00000032026.7 ENSMUSG00000032026 ENSMUST00000214161 Rexo2 protein_coding Interval_151064 chr7 118256992 118257227 + 0 NA Intergenic Intergenic 13244 ENSMUSG00000055159.7 ENSMUSG00000055159 ENSMUST00000138180 4930583K01Rik bidirectional_promoter_lncRNA Interval_115096 chr4 89661485 89661914 + 0 NA Intergenic Intergenic -17737 ENSMUSG00000043753.2 ENSMUSG00000043753 ENSMUST00000052478 Dmrta1 protein_coding Interval_61598 chr15 82878811 82879142 + 0 NA intron (ENSMUSG00000041852.15, intron 1 of 1) protein_coding-intron (ENSMUSG00000041852.15, intron 1 of 4) -20104 ENSMUSG00000100199.1 ENSMUSG00000100199 ENSMUST00000186291 Gm20324 antisense Interval_146998 chr7 57590453 57592402 + 0 NA promoter-TSS (ENSMUSG00000033676.13) protein_coding-promoter-TSS (ENSMUSG00000033676.13) 909 ENSMUSG00000033676.13 ENSMUSG00000033676 ENSMUST00000136033 Gabrb3 protein_coding Interval_74700 chr17 56049464 56049700 + 0 NA intron (ENSMUSG00000002835.9, intron 1 of 10) protein_coding-intron (ENSMUSG00000002835.9, intron 3 of 13) 2768 ENSMUSG00000002835.9 ENSMUSG00000002835 ENSMUST00000232828 Chaf1a protein_coding Interval_31447 chr11 100731967 100732831 + 0 NA intron (ENSMUSG00000019173.11, intron 1 of 2) protein_coding-intron (ENSMUSG00000019173.11, intron 1 of 5) -2184 ENSMUSG00000019173.11 ENSMUSG00000019173 ENSMUST00000155500 Rab5c protein_coding Interval_75439 chr17 66548578 66548781 + 0 NA Intergenic Intergenic 16576 ENSMUSG00000117235.1 ENSMUSG00000117235 ENSMUST00000233785 Gm49938 lincRNA Interval_133192 chr5 150446912 150447696 + 0 NA TTS (ENSMUSG00000107262.1) processed_pseudogene-TTS (ENSMUSG00000107262.1) 522 ENSMUSG00000107262.1 ENSMUSG00000107262 ENSMUST00000201000 Gm18753 processed_pseudogene Interval_157966 chr8 77381535 77381793 + 0 NA intron (ENSMUSG00000037148.8, intron 12 of 21) protein_coding-intron (ENSMUSG00000037148.8, intron 13 of 22) -9148 ENSMUSG00000109873.1 ENSMUSG00000109873 ENSMUST00000209499 Gm45407 TEC Interval_165348 chr9 46482319 46482709 + 0 NA Intergenic Intergenic 22559 ENSMUSG00000111115.1 ENSMUSG00000111115 ENSMUST00000214085 Gm47144 lincRNA Interval_134972 chr6 34229707 34231575 + 0 NA Intergenic Intergenic 51409 ENSMUSG00000087613.1 ENSMUSG00000087613 ENSMUST00000145644 Gm13855 lincRNA Interval_99267 chr2 158555336 158557077 + 0 NA Intergenic Intergenic 43410 ENSMUSG00000074625.10 ENSMUSG00000074625 ENSMUST00000135838 Arhgap40 protein_coding Interval_78215 chr18 10241916 10242655 + 0 NA Intergenic Intergenic -19922 ENSMUSG00000117552.1 ENSMUSG00000117552 ENSMUST00000234693 Gm5686 processed_pseudogene Interval_159204 chr8 91653921 91654712 + 0 NA intron (ENSMUSG00000055932.15, intron 5 of 5) protein_coding-intron (ENSMUSG00000055932.15, intron 8 of 8) 17581 ENSMUSG00000110302.1 ENSMUSG00000110302 ENSMUST00000210393 Gm45295 TEC Interval_106277 chr3 95085279 95086724 + 0 NA intron (ENSMUSG00000028126.16, intron 1 of 14) protein_coding-intron (ENSMUSG00000028126.16, intron 1 of 14) -2769 ENSMUSG00000028126.16 ENSMUSG00000028126 ENSMUST00000107229 Pip5k1a protein_coding Interval_121699 chr5 5481621 5482114 + 0 NA Intergenic Intergenic -2787 ENSMUSG00000079666.8 ENSMUSG00000079666 ENSMUST00000156282 1700015F17Rik protein_coding Interval_166517 chr9 60323692 60325069 + 0 NA intron (ENSMUSG00000032289.15, intron 5 of 16) protein_coding-intron (ENSMUSG00000032289.15, intron 6 of 17) -9762 ENSMUSG00000111296.1 ENSMUSG00000111296 ENSMUST00000214235 2010001M07Rik antisense Interval_23571 chr11 23450093 23450732 + 0 NA intron (ENSMUSG00000056342.16, intron 58 of 79) protein_coding-intron (ENSMUSG00000056342.16, intron 20 of 23) 29255 ENSMUSG00000065591.1 ENSMUSG00000065591 ENSMUST00000083657 Gm22753 snRNA Interval_72254 chr17 28832581 28833036 + 0 NA intron (ENSMUSG00000063952.16, intron 9 of 10) protein_coding-intron (ENSMUSG00000063952.16, intron 11 of 12) -10051 ENSMUSG00000117301.1 ENSMUSG00000117301 ENSMUST00000233498 Gm35883 antisense Interval_167387 chr9 68217298 68217713 + 0 NA Intergenic Intergenic -17524 ENSMUSG00000101345.1 ENSMUSG00000101345 ENSMUST00000186992 Gm28195 lincRNA Interval_146063 chr7 43618996 43619260 + 0 NA TTS (ENSMUSG00000055102.15) protein_coding-TTS (ENSMUSG00000055102.15) 11919 ENSMUSG00000055102.15 ENSMUSG00000055102 ENSMUST00000116324 Zfp819 protein_coding Interval_2856 chr1 46683564 46684111 + 0 NA intron (ENSMUSG00000101337.6, intron 45 of 64) protein_coding-intron (ENSMUSG00000101337.6, intron 45 of 64) 43606 ENSMUSG00000101337.6 ENSMUSG00000101337 ENSMUST00000187094 Dnah7c protein_coding Interval_48444 chr13 99075160 99076037 + 0 NA TTS (ENSMUSG00000100410.1) lincRNA-TTS (ENSMUSG00000100410.1) 12323 ENSMUSG00000100410.1 ENSMUSG00000100410 ENSMUST00000189489 2310020H05Rik lincRNA Interval_48777 chr13 103109858 103110914 + 0 NA intron (ENSMUSG00000034751.17, intron 3 of 3) protein_coding-intron (ENSMUSG00000034751.17, intron 3 of 4) -13541 ENSMUSG00000034751.17 ENSMUSG00000034751 ENSMUST00000187024 Mast4 protein_coding Interval_138574 chr6 89490141 89490428 + 0 NA intron (ENSMUSG00000030086.16, intron 4 of 5) protein_coding-intron (ENSMUSG00000030086.16, intron 4 of 7) 37171 ENSMUSG00000107680.1 ENSMUSG00000107680 ENSMUST00000205126 Gm43903 TEC Interval_166376 chr9 58741255 58741985 + 0 NA promoter-TSS (ENSMUSG00000074269.10) protein_coding-promoter-TSS (ENSMUSG00000074269.10) -45609 ENSMUSG00000093473.1 ENSMUSG00000093473 ENSMUST00000177528 Gm20620 processed_pseudogene Interval_92540 chr2 60428533 60428775 + 0 NA exon (ENSMUSG00000054580.14, exon 24 of 30) protein_coding-exon (ENSMUSG00000054580.14, exon 24 of 30) 17129 ENSMUSG00000087283.1 ENSMUSG00000087283 ENSMUST00000131457 Gm13580 antisense Interval_25284 chr11 46114609 46116117 + 0 NA intron (ENSMUSG00000011256.16, intron 7 of 22) protein_coding-intron (ENSMUSG00000011256.16, intron 7 of 22) 13093 ENSMUSG00000098942.1 ENSMUSG00000098942 ENSMUST00000184230 Mir8100 miRNA Interval_55281 chr14 80088208 80089869 + 0 NA Intergenic Intergenic 88787 ENSMUSG00000022026.7 ENSMUSG00000022026 ENSMUST00000088735 Olfm4 protein_coding Interval_123791 chr5 35543712 35544031 + 0 NA Intergenic Intergenic 10093 ENSMUSG00000106928.1 ENSMUSG00000106928 ENSMUST00000201742 Gm43860 TEC Interval_141348 chr6 127508827 127509705 + 0 NA Intergenic Intergenic 23473 ENSMUSG00000106962.1 ENSMUSG00000106962 ENSMUST00000202455 Gm43633 TEC Interval_61266 chr15 80355426 80356040 + 0 NA exon (ENSMUSG00000022416.15, exon 7 of 37) protein_coding-exon (ENSMUSG00000022416.15, exon 7 of 37) -33595 ENSMUSG00000022416.15 ENSMUSG00000022416 ENSMUST00000160175 Cacna1i protein_coding Interval_25628 chr11 50285693 50286020 + 0 NA intron (ENSMUSG00000097887.2, intron 2 of 2) protein_coding-intron (ENSMUSG00000050567.16, intron 1 of 4) 5948 ENSMUSG00000050567.16 ENSMUSG00000050567 ENSMUST00000059458 Maml1 protein_coding Interval_91387 chr2 38453388 38453732 + 0 NA intron (ENSMUSG00000085950.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000085950.1, intron 1 of 1) -26778 ENSMUSG00000064468.1 ENSMUSG00000064468 ENSMUST00000082534 Gm25081 snRNA Interval_144555 chr7 25859919 25860760 + 0 NA intron (ENSMUSG00000108415.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000108415.1, intron 1 of 2) 199 ENSMUSG00000108415.1 ENSMUSG00000108415 ENSMUST00000206564 Gm30146 lincRNA Interval_1949 chr1 34864489 34864992 + 0 NA intron (ENSMUSG00000026123.11, intron 5 of 6) protein_coding-intron (ENSMUSG00000026123.11, intron 5 of 7) -12916 ENSMUSG00000026123.11 ENSMUSG00000026123 ENSMUST00000191722 Plekhb2 protein_coding Interval_157202 chr8 67684758 67685766 + 0 NA Intergenic Intergenic -56156 ENSMUSG00000104757.1 ENSMUSG00000104757 ENSMUST00000198490 Gm44391 miRNA Interval_13269 chr10 13861006 13862055 + 0 NA promoter-TSS (ENSMUSG00000019806.13) protein_coding-promoter-TSS (ENSMUSG00000019806.13) 7299 ENSMUSG00000019806.13 ENSMUSG00000019806 ENSMUST00000162869 Aig1 protein_coding Interval_19065 chr10 94159062 94159696 + 0 NA intron (ENSMUSG00000005897.14, intron 2 of 13) protein_coding-intron (ENSMUSG00000005897.14, intron 3 of 14) 11356 ENSMUSG00000005897.14 ENSMUSG00000005897 ENSMUST00000099343 Nr2c1 protein_coding Interval_128318 chr5 112516581 112516968 + 0 NA intron (ENSMUSG00000058153.15, intron 1 of 14) protein_coding-intron (ENSMUSG00000058153.15, intron 1 of 16) 60094 ENSMUSG00000058153.15 ENSMUSG00000058153 ENSMUST00000212758 Sez6l protein_coding Interval_36924 chr12 55385839 55386982 + 0 NA intron (ENSMUSG00000021024.14, intron 1 of 6) protein_coding-intron (ENSMUSG00000021024.14, intron 1 of 6) 2188 ENSMUSG00000021024.14 ENSMUSG00000021024 ENSMUST00000162972 Psma6 protein_coding Interval_101485 chr2 181773040 181774148 + 0 NA intron (ENSMUSG00000010505.16, intron 1 of 1) protein_coding-intron (ENSMUSG00000010505.16, intron 1 of 22) 6082 ENSMUSG00000010505.16 ENSMUSG00000010505 ENSMUST00000148766 Myt1 protein_coding Interval_159862 chr8 104427206 104427405 + 0 NA intron (ENSMUSG00000035770.8, intron 7 of 13) protein_coding-intron (ENSMUSG00000035770.8, intron 7 of 12) -10955 ENSMUSG00000110689.1 ENSMUSG00000110689 ENSMUST00000211988 Gm45731 TEC Interval_95587 chr2 112507032 112507369 + 0 NA intron (ENSMUSG00000003604.14, intron 1 of 5) protein_coding-intron (ENSMUSG00000003604.14, intron 1 of 5) 6331 ENSMUSG00000080622.1 ENSMUSG00000080622 ENSMUST00000116972 Gm22676 snoRNA Interval_52825 chr14 50896374 50897659 + 0 NA exon (ENSMUSG00000090799.2, exon 1 of 2) protein_coding-exon (ENSMUSG00000090799.2, exon 1 of 2) 491 ENSMUSG00000090799.2 ENSMUSG00000090799 ENSMUST00000170855 Klhl33 protein_coding Interval_122772 chr5 25284159 25284566 + 0 NA exon (ENSMUSG00000038056.15, exon 52 of 59) protein_coding-exon (ENSMUSG00000038056.15, exon 52 of 59) 15713 ENSMUSG00000038056.15 ENSMUSG00000038056 ENSMUST00000172626 Kmt2c protein_coding Interval_123178 chr5 30406881 30408013 + 0 NA intron (ENSMUSG00000062372.13, intron 5 of 45) protein_coding-intron (ENSMUSG00000062372.13, intron 5 of 46) 41401 ENSMUSG00000106311.1 ENSMUSG00000106311 ENSMUST00000200001 Gm43755 sense_intronic Interval_45101 chr13 52188597 52191499 + 0 NA Intergenic Intergenic 9637 ENSMUSG00000113399.1 ENSMUSG00000113399 ENSMUST00000222876 Gm48199 lincRNA Interval_23504 chr11 23007320 23008709 + 0 NA promoter-TSS (ENSMUSG00000049811.17) protein_coding-promoter-TSS (ENSMUSG00000049811.17) -5373 ENSMUSG00000049811.17 ENSMUSG00000049811 ENSMUST00000151877 Fam161a protein_coding Interval_54292 chr14 67222026 67222278 + 0 NA Intergenic Intergenic 10977 ENSMUSG00000093744.1 ENSMUSG00000093744 ENSMUST00000175861 Gm20675 lincRNA Interval_25583 chr11 49955787 49956273 + 0 NA intron (ENSMUSG00000020374.16, intron 1 of 13) protein_coding-intron (ENSMUSG00000020374.16, intron 1 of 13) -7755 ENSMUSG00000020374.16 ENSMUSG00000020374 ENSMUST00000109172 Rasgef1c protein_coding Interval_87833 chr19 56349197 56349830 + 0 NA intron (ENSMUSG00000049134.15, intron 24 of 36) protein_coding-intron (ENSMUSG00000049134.15, intron 24 of 40) -14749 ENSMUSG00000090990.1 ENSMUSG00000090990 ENSMUST00000163160 Gm17197 antisense Interval_78906 chr18 21416011 21416939 + 0 NA Intergenic Intergenic -35544 ENSMUSG00000096341.1 ENSMUSG00000096341 ENSMUST00000093714 Gm22886 snRNA Interval_39772 chr12 97991452 97991751 + 0 NA Intergenic Intergenic 108754 ENSMUSG00000112086.1 ENSMUSG00000112086 ENSMUST00000220437 Gm35412 processed_pseudogene Interval_38209 chr12 76376678 76378840 + 0 NA intron (ENSMUSG00000033454.6, intron 1 of 1) protein_coding-intron (ENSMUSG00000033454.6, intron 1 of 1) 7493 ENSMUSG00000033454.6 ENSMUSG00000033454 ENSMUST00000042779 Zbtb1 protein_coding Interval_159001 chr8 88626552 88628453 + 0 NA exon (ENSMUSG00000031662.8, exon 4 of 4) protein_coding-exon (ENSMUSG00000031662.8, exon 4 of 4) 8599 ENSMUSG00000031662.8 ENSMUSG00000031662 ENSMUST00000209806 Snx20 protein_coding Interval_77970 chr18 6240674 6242119 + 0 NA promoter-TSS (ENSMUSG00000006740.14) protein_coding-promoter-TSS (ENSMUSG00000006740.14) -260 ENSMUSG00000006740.14 ENSMUSG00000006740 ENSMUST00000170959 Kif5b protein_coding Interval_71531 chr17 24366732 24367666 + 0 NA exon (ENSMUSG00000024130.16, exon 7 of 7) protein_coding-exon (ENSMUSG00000024130.16, exon 7 of 7) -4655 ENSMUSG00000095396.1 ENSMUSG00000095396 ENSMUST00000179484 Gm25618 snRNA Interval_29570 chr11 84977849 84978535 + 0 NA Intergenic Intergenic 20367 ENSMUSG00000000805.18 ENSMUSG00000000805 ENSMUST00000108076 Car4 protein_coding Interval_49592 chr13 113269571 113271137 + 0 NA Intergenic Intergenic -22805 ENSMUSG00000021763.17 ENSMUSG00000021763 ENSMUST00000135096 BC067074 protein_coding Interval_110563 chr4 3929246 3930111 + 0 NA intron (ENSMUSG00000003282.9, intron 1 of 3) protein_coding-intron (ENSMUSG00000003282.9, intron 1 of 5) 8745 ENSMUSG00000003282.9 ENSMUSG00000003282 ENSMUST00000147035 Plag1 protein_coding Interval_153876 chr8 10438720 10439048 + 0 NA exon (ENSMUSG00000039057.11, exon 17 of 35) protein_coding-exon (ENSMUSG00000039057.11, exon 17 of 35) 189596 ENSMUSG00000039057.11 ENSMUSG00000039057 ENSMUST00000042103 Myo16 protein_coding Interval_73959 chr17 45678046 45678680 + 0 NA TTS (ENSMUSG00000036026.15) protein_coding-TTS (ENSMUSG00000036026.15) -7994 ENSMUSG00000023939.7 ENSMUSG00000023939 ENSMUST00000148537 Mrpl14 protein_coding Interval_156217 chr8 46185523 46185879 + 0 NA intron (ENSMUSG00000031631.15, intron 2 of 3) protein_coding-intron (ENSMUSG00000031631.15, intron 3 of 4) 16145 ENSMUSG00000031631.15 ENSMUSG00000031631 ENSMUST00000164504 Cfap97 protein_coding Interval_106793 chr3 100870628 100871832 + 0 NA intron (ENSMUSG00000051076.8, intron 1 of 5) protein_coding-intron (ENSMUSG00000051076.8, intron 1 of 5) 45771 ENSMUSG00000051076.8 ENSMUSG00000051076 ENSMUST00000054791 Vtcn1 protein_coding Interval_86527 chr19 41415737 41416488 + 0 NA Intergenic Intergenic -31010 ENSMUSG00000025017.10 ENSMUSG00000025017 ENSMUST00000235978 Pik3ap1 protein_coding Interval_9177 chr1 154785532 154787131 + 0 NA intron (ENSMUSG00000004110.17, intron 1 of 3) protein_coding-intron (ENSMUSG00000004110.17, intron 1 of 3) 30610 ENSMUSG00000004110.17 ENSMUSG00000004110 ENSMUST00000186256 Cacna1e protein_coding Interval_31459 chr11 100799650 100800328 + 0 NA intron (ENSMUSG00000020919.11, intron 5 of 5) protein_coding-intron (ENSMUSG00000020919.11, intron 5 of 18) -25189 ENSMUSG00000089049.1 ENSMUSG00000089049 ENSMUST00000158424 Gm24358 misc_RNA Interval_11164 chr1 179785707 179786071 + 0 NA intron (ENSMUSG00000026491.13, intron 11 of 35) protein_coding-intron (ENSMUSG00000026491.13, intron 11 of 35) 16183 ENSMUSG00000026491.13 ENSMUSG00000026491 ENSMUST00000147137 Ahctf1 protein_coding Interval_90622 chr2 31527775 31528846 + 0 NA Intergenic Intergenic 24385 ENSMUSG00000084226.1 ENSMUSG00000084226 ENSMUST00000117887 Gm13426 processed_pseudogene Interval_170140 chr9 105467599 105468042 + 0 NA intron (ENSMUSG00000032570.17, intron 2 of 6) protein_coding-intron (ENSMUSG00000032570.17, intron 3 of 27) -2700 ENSMUSG00000099373.1 ENSMUSG00000099373 ENSMUST00000188984 Gm19667 antisense Interval_37291 chr12 64865920 64866170 + 0 NA Intergenic Intergenic 11583 ENSMUSG00000113075.1 ENSMUSG00000113075 ENSMUST00000223350 Rpl7a-ps1 processed_pseudogene Interval_90249 chr2 29311823 29312032 + 0 NA Intergenic Intergenic -58934 ENSMUSG00000079499.9 ENSMUSG00000079499 ENSMUST00000028141 6530402F18Rik processed_transcript Interval_45306 chr13 54198816 54199585 + 0 NA intron (ENSMUSG00000034987.4, intron 1 of 2) protein_coding-intron (ENSMUSG00000034987.4, intron 1 of 2) -14807 ENSMUSG00000034987.4 ENSMUSG00000034987 ENSMUST00000211742 Hrh2 protein_coding Interval_38063 chr12 75432093 75433117 + 0 NA Intergenic Intergenic -15824 ENSMUSG00000048982.3 ENSMUSG00000048982 ENSMUST00000051079 Gphb5 protein_coding Interval_174737 chrX 164414483 164415040 + 0 NA Intergenic Intergenic -5026 ENSMUSG00000031381.16 ENSMUSG00000031381 ENSMUST00000155849 Piga protein_coding Interval_25066 chr11 43612898 43614267 + 0 NA Intergenic Intergenic 2747 ENSMUSG00000082614.1 ENSMUSG00000082614 ENSMUST00000117511 Gm12149 processed_pseudogene Interval_130773 chr5 130289633 130290513 + 0 NA intron (ENSMUSG00000056310.14, intron 11 of 15) protein_coding-intron (ENSMUSG00000056310.14, intron 11 of 15) 34454 ENSMUSG00000056310.14 ENSMUSG00000056310 ENSMUST00000147619 Tyw1 protein_coding Interval_51285 chr14 25741352 25742113 + 0 NA intron (ENSMUSG00000055538.7, intron 2 of 3) protein_coding-intron (ENSMUSG00000055538.7, intron 2 of 3) -21940 ENSMUSG00000055538.7 ENSMUSG00000055538 ENSMUST00000184642 Zcchc24 protein_coding Interval_86679 chr19 42510055 42511102 + 0 NA Intergenic Intergenic 52530 ENSMUSG00000090117.7 ENSMUSG00000090117 ENSMUST00000162829 Gm16541 antisense Interval_170672 chr9 110007197 110008916 + 0 NA intron (ENSMUSG00000032479.15, intron 3 of 18) protein_coding-intron (ENSMUSG00000032479.15, intron 3 of 18) 2082 ENSMUSG00000105230.1 ENSMUSG00000105230 ENSMUST00000196806 Gm42433 TEC Interval_23923 chr11 28371099 28372705 + 0 NA Intergenic Intergenic 11540 ENSMUSG00000084905.1 ENSMUSG00000084905 ENSMUST00000152849 Gm12081 antisense Interval_105119 chr3 81783149 81783506 + 0 NA Intergenic Intergenic -18698 ENSMUSG00000103695.1 ENSMUSG00000103695 ENSMUST00000193672 A830029E22Rik lincRNA Interval_67119 chr16 43573432 43575673 + 0 NA intron (ENSMUSG00000022708.16, intron 9 of 9) protein_coding-intron (ENSMUSG00000022708.16, intron 9 of 9) -66103 ENSMUSG00000076372.2 ENSMUSG00000076372 ENSMUST00000102417 Mir568 miRNA Interval_97968 chr2 146256623 146257797 + 0 NA intron (ENSMUSG00000037110.20, intron 40 of 41) protein_coding-intron (ENSMUSG00000037110.20, intron 39 of 40) -2076 ENSMUSG00000085958.1 ENSMUSG00000085958 ENSMUST00000135360 A930019D19Rik antisense Interval_110316 chr3 156731177 156731948 + 0 NA exon (ENSMUSG00000106385.1, exon 1 of 1) TEC-exon (ENSMUSG00000106385.1, exon 1 of 1) 464 ENSMUSG00000106385.1 ENSMUSG00000106385 ENSMUST00000199676 Gm42943 TEC Interval_86933 chr19 44991105 44992987 + 0 NA promoter-TSS (ENSMUSG00000025207.16) protein_coding-promoter-TSS (ENSMUSG00000025207.16) 2785 ENSMUSG00000025207.16 ENSMUSG00000025207 ENSMUST00000179305 Sema4g protein_coding Interval_22021 chr11 5822361 5822594 + 0 NA Intergenic Intergenic -3894 ENSMUSG00000080904.1 ENSMUSG00000080904 ENSMUST00000119907 Gm11966 processed_pseudogene Interval_152650 chr7 135715728 135717056 + 0 NA promoter-TSS (ENSMUSG00000031004.8) protein_coding-promoter-TSS (ENSMUSG00000031004.8) -5481 ENSMUSG00000031004.8 ENSMUSG00000031004 ENSMUST00000211238 Mki67 protein_coding Interval_36286 chr12 40704051 40705139 + 0 NA intron (ENSMUSG00000035954.10, intron 15 of 31) protein_coding-intron (ENSMUSG00000035954.10, intron 15 of 52) -170942 ENSMUSG00000113435.1 ENSMUSG00000113435 ENSMUST00000221545 Gm19441 processed_pseudogene Interval_77339 chr17 88072621 88072833 + 0 NA Intergenic Intergenic -7484 ENSMUSG00000005371.15 ENSMUSG00000005371 ENSMUST00000235056 Fbxo11 protein_coding Interval_20348 chr10 117037281 117037670 + 0 NA Intergenic Intergenic -6271 ENSMUSG00000112242.1 ENSMUSG00000112242 ENSMUST00000217799 Gm10747 lincRNA Interval_162960 chr9 13758027 13758774 + 0 NA intron (ENSMUSG00000031918.16, intron 1 of 3) protein_coding-intron (ENSMUSG00000031918.16, intron 1 of 14) 9081 ENSMUSG00000031918.16 ENSMUSG00000031918 ENSMUST00000146901 Mtmr2 protein_coding Interval_60092 chr15 65272394 65273315 + 0 NA Intergenic Intergenic -72292 ENSMUSG00000115066.1 ENSMUSG00000115066 ENSMUST00000227626 Gm49242 processed_pseudogene Interval_104104 chr3 58609876 58610553 + 0 NA Intergenic Intergenic 26993 ENSMUSG00000070471.3 ENSMUSG00000070471 ENSMUST00000041115 Erich6 protein_coding Interval_91639 chr2 45097895 45098597 + 0 NA intron (ENSMUSG00000026872.18, intron 2 of 2) protein_coding-intron (ENSMUSG00000026872.18, intron 2 of 9) -12675 ENSMUSG00000052248.16 ENSMUSG00000052248 ENSMUST00000231441 Zeb2os antisense Interval_105287 chr3 84609620 84610739 + 0 NA intron (ENSMUSG00000102805.5, intron 3 of 9) protein_coding-intron (ENSMUSG00000102805.5, intron 3 of 9) 16605 ENSMUSG00000047819.3 ENSMUSG00000047819 ENSMUST00000062623 Tigd4 protein_coding Interval_101986 chr3 14478438 14479003 + 0 NA Intergenic Intergenic -2053 ENSMUSG00000039710.14 ENSMUSG00000039710 ENSMUST00000120801 Slc7a12 protein_coding Interval_114359 chr4 74264648 74264978 + 0 NA intron (ENSMUSG00000028397.13, intron 2 of 3) protein_coding-intron (ENSMUSG00000028397.13, intron 2 of 21) 2004 ENSMUSG00000028397.13 ENSMUSG00000028397 ENSMUST00000150439 Kdm4c protein_coding Interval_38102 chr12 75658245 75658748 + 0 NA intron (ENSMUSG00000045690.8, intron 1 of 2) protein_coding-intron (ENSMUSG00000045690.8, intron 1 of 1) 11031 ENSMUSG00000045690.8 ENSMUSG00000045690 ENSMUST00000187307 Wdr89 protein_coding Interval_77439 chr17 88763605 88764716 + 0 NA TTS (ENSMUSG00000024107.7) protein_coding-TTS (ENSMUSG00000024107.7) 9896 ENSMUSG00000024107.7 ENSMUSG00000024107 ENSMUST00000234269 Lhcgr protein_coding Interval_89844 chr2 25931030 25932085 + 0 NA intron (ENSMUSG00000026933.17, intron 16 of 16) protein_coding-intron (ENSMUSG00000026933.17, intron 16 of 16) 51725 ENSMUSG00000026933.17 ENSMUSG00000026933 ENSMUST00000127823 Camsap1 protein_coding Interval_685 chr1 9871719 9871995 + 0 NA intron (ENSMUSG00000025915.14, intron 4 of 4) protein_coding-intron (ENSMUSG00000025915.14, intron 4 of 16) -11610 ENSMUSG00000025915.14 ENSMUSG00000025915 ENSMUST00000188486 Sgk3 protein_coding Interval_119240 chr4 136408452 136409014 + 0 NA Intergenic Intergenic -15879 ENSMUSG00000070687.11 ENSMUSG00000070687 ENSMUST00000133818 Htr1d protein_coding Interval_35008 chr12 16618726 16619071 + 0 NA intron (ENSMUSG00000020593.16, intron 1 of 21) protein_coding-intron (ENSMUSG00000020593.16, intron 1 of 21) -7932 ENSMUSG00000020593.16 ENSMUSG00000020593 ENSMUST00000221146 Lpin1 protein_coding Interval_93260 chr2 71539168 71539758 + 0 NA Intergenic Intergenic -1653 ENSMUSG00000084946.2 ENSMUSG00000084946 ENSMUST00000137251 Dlx1as antisense Interval_143943 chr7 18308616 18309011 + 0 NA Intergenic Intergenic 18383 ENSMUSG00000108374.1 ENSMUSG00000108374 ENSMUST00000206790 Gm33626 unprocessed_pseudogene Interval_173539 chrX 99046512 99046772 + 0 NA intron (ENSMUSG00000031216.13, intron 1 of 2) protein_coding-intron (ENSMUSG00000031216.13, intron 1 of 13) 35760 ENSMUSG00000083310.2 ENSMUSG00000083310 ENSMUST00000119692 Gm5760 processed_pseudogene Interval_113417 chr4 54787980 54788435 + 0 NA Intergenic Intergenic -64921 ENSMUSG00000082111.1 ENSMUSG00000082111 ENSMUST00000120731 Gm12479 processed_pseudogene Interval_53695 chr14 60945677 60945888 + 0 NA Intergenic Intergenic 92109 ENSMUSG00000060548.13 ENSMUSG00000060548 ENSMUST00000225730 Tnfrsf19 protein_coding Interval_163517 chr9 21815626 21817160 + 0 NA exon (ENSMUSG00000032198.9, exon 32 of 49) protein_coding-exon (ENSMUSG00000032198.9, exon 32 of 49) -6393 ENSMUSG00000098473.1 ENSMUSG00000098473 ENSMUST00000184374 Mir7083 miRNA Interval_142689 chr6 145016793 145017186 + 0 NA intron (ENSMUSG00000030268.17, intron 2 of 2) protein_coding-intron (ENSMUSG00000030268.17, intron 6 of 10) 21199 ENSMUSG00000088867.1 ENSMUSG00000088867 ENSMUST00000158242 Gm23071 rRNA Interval_157421 chr8 70254834 70255082 + 0 NA TTS (ENSMUSG00000036054.15) protein_coding-TTS (ENSMUSG00000036054.15) 20732 ENSMUSG00000036054.15 ENSMUSG00000036054 ENSMUST00000129402 Sugp2 protein_coding Interval_68883 chr16 87767457 87767761 + 0 NA Intergenic Intergenic -5966 ENSMUSG00000088684.1 ENSMUSG00000088684 ENSMUST00000158059 Gm23994 snoRNA Interval_144260 chr7 24097718 24098231 + 0 NA intron (ENSMUSG00000057101.8, intron 3 of 4) protein_coding-intron (ENSMUSG00000057101.8, intron 3 of 4) 16050 ENSMUSG00000057101.8 ENSMUSG00000057101 ENSMUST00000206482 Zfp180 protein_coding Interval_117763 chr4 126085627 126086612 + 0 NA intron (ENSMUSG00000042616.8, intron 8 of 10) protein_coding-intron (ENSMUSG00000042616.8, intron 7 of 9) 3191 ENSMUSG00000042616.8 ENSMUSG00000042616 ENSMUST00000129968 Oscp1 protein_coding Interval_61384 chr15 81258699 81259462 + 0 NA intron (ENSMUSG00000115970.1, intron 2 of 3) lincRNA-intron (ENSMUSG00000115970.1, intron 2 of 3) -7218 ENSMUSG00000115970.1 ENSMUSG00000115970 ENSMUST00000230042 8430426J06Rik lincRNA Interval_94949 chr2 102119191 102119722 + 0 NA intron (ENSMUSG00000048058.17, intron 1 of 5) protein_coding-intron (ENSMUSG00000048058.17, intron 1 of 5) 18663 ENSMUSG00000048058.17 ENSMUSG00000048058 ENSMUST00000127888 Ldlrad3 protein_coding Interval_12208 chr1 190844206 190844583 + 0 NA intron (ENSMUSG00000089872.10, intron 4 of 8) protein_coding-intron (ENSMUSG00000089872.10, intron 7 of 14) 55323 ENSMUSG00000089872.10 ENSMUSG00000089872 ENSMUST00000159066 Rps6kc1 protein_coding Interval_129629 chr5 121422385 121422908 + 0 NA intron (ENSMUSG00000042719.17, intron 10 of 20) protein_coding-intron (ENSMUSG00000042719.17, intron 11 of 23) -17357 ENSMUSG00000042719.17 ENSMUSG00000042719 ENSMUST00000174322 Naa25 protein_coding Interval_158788 chr8 86560208 86562372 + 0 NA intron (ENSMUSG00000036872.16, intron 2 of 29) protein_coding-intron (ENSMUSG00000036872.16, intron 2 of 28) 5300 ENSMUSG00000036872.16 ENSMUSG00000036872 ENSMUST00000152438 Abcc12 protein_coding Interval_101342 chr2 180597722 180598732 + 0 NA promoter-TSS (ENSMUSG00000027570.15) protein_coding-promoter-TSS (ENSMUSG00000027570.15) 8765 ENSMUSG00000049401.10 ENSMUSG00000049401 ENSMUST00000147070 Ogfr protein_coding Interval_53524 chr14 58182702 58183788 + 0 NA Intergenic Intergenic -56976 ENSMUSG00000114562.1 ENSMUSG00000114562 ENSMUST00000226080 Gm18080 processed_pseudogene Interval_35376 chr12 21155153 21155574 + 0 NA intron (ENSMUSG00000052632.16, intron 1 of 27) protein_coding-intron (ENSMUSG00000052632.16, intron 1 of 26) 91960 ENSMUSG00000118655.1 ENSMUSG00000118655 ENSMUST00000172962 AC156032.1 processed_transcript Interval_23339 chr11 21538570 21539126 + 0 NA Intergenic Intergenic 25801 ENSMUSG00000093168.1 ENSMUSG00000093168 ENSMUST00000175427 Gm22990 miRNA Interval_18793 chr10 90863694 90864762 + 0 NA intron (ENSMUSG00000058589.14, intron 1 of 2) protein_coding-intron (ENSMUSG00000058589.14, intron 3 of 11) 13129 ENSMUSG00000112601.1 ENSMUSG00000112601 ENSMUST00000218261 Gm47590 TEC Interval_151323 chr7 121020403 121020897 + 0 NA Intergenic Intergenic 3812 ENSMUSG00000088935.1 ENSMUSG00000088935 ENSMUST00000158310 Gm25924 snRNA Interval_102757 chr3 30843277 30843662 + 0 NA Intergenic Intergenic -12524 ENSMUSG00000037661.14 ENSMUSG00000037661 ENSMUST00000147697 Gpr160 protein_coding Interval_32575 chr11 108779047 108779360 + 0 NA intron (ENSMUSG00000020728.17, intron 4 of 5) protein_coding-intron (ENSMUSG00000020728.17, intron 24 of 27) -41130 ENSMUSG00000085811.1 ENSMUSG00000085811 ENSMUST00000143781 Cep112it sense_intronic Interval_151168 chr7 118959368 118959681 + 0 NA intron (ENSMUSG00000073856.11, intron 7 of 7) protein_coding-intron (ENSMUSG00000073856.11, intron 8 of 8) 10162 ENSMUSG00000109517.1 ENSMUSG00000109517 ENSMUST00000208287 Gm44763 antisense Interval_115119 chr4 91083040 91084243 + 0 NA Intergenic Intergenic 45741 ENSMUSG00000079962.2 ENSMUSG00000079962 ENSMUST00000116078 Gm12643 processed_pseudogene Interval_12804 chr10 5667594 5667822 + 0 NA Intergenic Intergenic 27356 ENSMUSG00000019772.5 ENSMUSG00000019772 ENSMUST00000217331 Vip protein_coding Interval_34648 chr12 8339770 8342123 + 0 NA intron (ENSMUSG00000020605.9, intron 6 of 6) protein_coding-intron (ENSMUSG00000020605.9, intron 6 of 6) -4229 ENSMUSG00000111889.1 ENSMUSG00000111889 ENSMUST00000217669 Gm48071 antisense Interval_130472 chr5 127978769 127980417 + 0 NA intron (ENSMUSG00000034310.8, intron 4 of 8) protein_coding-intron (ENSMUSG00000034310.8, intron 4 of 8) 101062 ENSMUSG00000085328.2 ENSMUSG00000085328 ENSMUST00000164420 Gm17131 unprocessed_pseudogene Interval_84382 chr19 10516153 10516412 + 0 NA exon (ENSMUSG00000024668.8, exon 3 of 3) protein_coding-exon (ENSMUSG00000024668.8, exon 3 of 3) 8840 ENSMUSG00000024668.8 ENSMUSG00000024668 ENSMUST00000236455 Sdhaf2 protein_coding Interval_27380 chr11 67093514 67095767 + 0 NA exon (ENSMUSG00000020908.14, exon 26 of 40) protein_coding-exon (ENSMUSG00000020908.14, exon 26 of 40) -5164 ENSMUSG00000098855.1 ENSMUSG00000098855 ENSMUST00000184592 Mir6923 miRNA Interval_142889 chr6 146732132 146732757 + 0 NA intron (ENSMUSG00000001630.13, intron 1 of 1) protein_coding-intron (ENSMUSG00000001630.13, intron 1 of 13) 7132 ENSMUSG00000001630.13 ENSMUSG00000001630 ENSMUST00000203318 Stk38l protein_coding Interval_141188 chr6 125480840 125482604 + 0 NA promoter-TSS (ENSMUSG00000101191.6) antisense-promoter-TSS (ENSMUSG00000101191.6) -222 ENSMUSG00000101191.6 ENSMUSG00000101191 ENSMUST00000187724 Gm28809 antisense Interval_145107 chr7 30064444 30065345 + 0 NA intron (ENSMUSG00000098022.7, intron 4 of 5) protein_coding-intron (ENSMUSG00000098022.7, intron 5 of 6) 7925 ENSMUSG00000098022.7 ENSMUSG00000098022 ENSMUST00000183190 Zfp82 protein_coding Interval_94202 chr2 85058746 85061360 + 0 NA promoter-TSS (ENSMUSG00000033955.13) protein_coding-promoter-TSS (ENSMUSG00000033955.13) -911 ENSMUSG00000033955.13 ENSMUSG00000033955 ENSMUST00000238769 Tnks1bp1 protein_coding Interval_148791 chr7 87528283 87528559 + 0 NA Intergenic Intergenic -35029 ENSMUSG00000004651.6 ENSMUSG00000004651 ENSMUST00000207834 Tyr protein_coding Interval_72571 chr17 30731997 30732208 + 0 NA intron (ENSMUSG00000033826.10, intron 40 of 90) protein_coding-intron (ENSMUSG00000033826.10, intron 42 of 92) 50027 ENSMUSG00000094785.1 ENSMUSG00000094785 ENSMUST00000083205 Gm24661 snRNA Interval_42450 chr13 13660294 13660573 + 0 NA intron (ENSMUSG00000019726.12, intron 16 of 52) protein_coding-intron (ENSMUSG00000019726.12, intron 16 of 52) -23658 ENSMUSG00000019726.12 ENSMUSG00000019726 ENSMUST00000221587 Lyst protein_coding Interval_133632 chr6 7814099 7814383 + 0 NA Intergenic Intergenic 21418 ENSMUSG00000107844.1 ENSMUSG00000107844 ENSMUST00000203028 Gm8686 processed_pseudogene Interval_38514 chr12 79775720 79776396 + 0 NA intron (ENSMUSG00000059060.15, intron 9 of 10) protein_coding-intron (ENSMUSG00000059060.15, intron 9 of 10) 149436 ENSMUSG00000112765.1 ENSMUSG00000112765 ENSMUST00000219857 9430078K24Rik lincRNA Interval_125891 chr5 75472464 75473529 + 0 NA Intergenic Intergenic -73624 ENSMUSG00000107386.1 ENSMUSG00000107386 ENSMUST00000202494 Gm42800 lincRNA Interval_123679 chr5 34468992 34469362 + 0 NA promoter-TSS (ENSMUSG00000107227.1) TEC-promoter-TSS (ENSMUSG00000107227.1) -487 ENSMUSG00000107227.1 ENSMUSG00000107227 ENSMUST00000201811 Gm42559 TEC Interval_4904 chr1 82254362 82254548 + 0 NA intron (ENSMUSG00000055980.2, intron 1 of 1) protein_coding-intron (ENSMUSG00000055980.2, intron 1 of 1) 21343 ENSMUSG00000022591.5 ENSMUSG00000022591 ENSMUST00000023262 Gm9747 protein_coding Interval_42000 chr13 6295138 6295377 + 0 NA promoter-TSS (ENSMUSG00000114097.1) lincRNA-promoter-TSS (ENSMUSG00000114097.1) -543 ENSMUSG00000114097.1 ENSMUSG00000114097 ENSMUST00000221255 Gm35615 lincRNA Interval_9696 chr1 161116088 161116342 + 0 NA intron (ENSMUSG00000026705.16, intron 2 of 7) protein_coding-intron (ENSMUSG00000026705.16, intron 2 of 11) -20591 ENSMUSG00000026705.16 ENSMUSG00000026705 ENSMUST00000145736 Klhl20 protein_coding Interval_61646 chr15 83131739 83132111 + 0 NA intron (ENSMUSG00000041815.14, intron 5 of 7) protein_coding-intron (ENSMUSG00000041815.14, intron 6 of 8) -13579 ENSMUSG00000018040.9 ENSMUSG00000018040 ENSMUST00000167483 Rrp7a protein_coding Interval_30290 chr11 92983817 92984120 + 0 NA Intergenic Intergenic 73671 ENSMUSG00000087810.1 ENSMUSG00000087810 ENSMUST00000157185 Gm25113 snoRNA Interval_137077 chr6 67194909 67195867 + 0 NA intron (ENSMUSG00000107799.1, intron 1 of 2) antisense-intron (ENSMUSG00000107799.1, intron 1 of 2) -10231 ENSMUSG00000047905.10 ENSMUSG00000047905 ENSMUST00000120174 Gm8566 processed_pseudogene Interval_160680 chr8 111557459 111557646 + 0 NA intron (ENSMUSG00000033545.14, intron 1 of 3) protein_coding-intron (ENSMUSG00000033545.14, intron 1 of 3) 19974 ENSMUSG00000033545.14 ENSMUSG00000033545 ENSMUST00000173819 Znrf1 protein_coding Interval_125652 chr5 73048931 73049133 + 0 NA intron (ENSMUSG00000070733.13, intron 12 of 20) protein_coding-intron (ENSMUSG00000070733.13, intron 51 of 59) -3878 ENSMUSG00000107171.1 ENSMUSG00000107171 ENSMUST00000202292 Gm42572 TEC Interval_31327 chr11 99984922 99985820 + 0 NA exon (ENSMUSG00000078253.3, exon 1 of 1) protein_coding-exon (ENSMUSG00000078253.3, exon 1 of 1) 1226 ENSMUSG00000078253.3 ENSMUSG00000078253 ENSMUST00000105050 Krtap16-1 protein_coding Interval_52483 chr14 46882020 46885036 + 0 NA promoter-TSS (ENSMUSG00000021838.17) protein_coding-promoter-TSS (ENSMUSG00000021838.17) 548 ENSMUSG00000021838.17 ENSMUSG00000021838 ENSMUST00000130046 Samd4 protein_coding Interval_165758 chr9 52223763 52223963 + 0 NA Intergenic Intergenic -55291 ENSMUSG00000035164.8 ENSMUSG00000035164 ENSMUST00000165519 Zc3h12c protein_coding Interval_136625 chr6 56785124 56785338 + 0 NA intron (ENSMUSG00000059486.11, intron 2 of 3) protein_coding-intron (ENSMUSG00000059486.11, intron 2 of 3) 12048 ENSMUSG00000059486.11 ENSMUSG00000059486 ENSMUST00000124994 Kbtbd2 protein_coding Interval_118363 chr4 130906176 130906808 + 0 NA Intergenic Intergenic -6866 ENSMUSG00000028581.17 ENSMUSG00000028581 ENSMUST00000125332 Laptm5 protein_coding Interval_167032 chr9 64683952 64684605 + 0 NA intron (ENSMUSG00000036466.17, intron 13 of 24) protein_coding-intron (ENSMUSG00000036466.17, intron 13 of 24) 41442 ENSMUSG00000004771.12 ENSMUSG00000004771 ENSMUST00000165083 Rab11a protein_coding Interval_37102 chr12 58267973 58269381 + 0 NA exon (ENSMUSG00000045930.3, exon 1 of 1) protein_coding-exon (ENSMUSG00000045930.3, exon 1 of 1) 613 ENSMUSG00000045930.3 ENSMUSG00000045930 ENSMUST00000062254 Clec14a protein_coding Interval_87501 chr19 53078868 53079756 + 0 NA exon (ENSMUSG00000099988.7, exon 2 of 3) processed_transcript-exon (ENSMUSG00000099988.7, exon 2 of 3) 3069 ENSMUSG00000099988.7 ENSMUSG00000099988 ENSMUST00000236249 1700054A03Rik processed_transcript Interval_6022 chr1 94042469 94042695 + 0 NA intron (ENSMUSG00000026285.7, intron 1 of 4) protein_coding-intron (ENSMUSG00000026285.7, intron 1 of 4) 9971 ENSMUSG00000026285.7 ENSMUSG00000026285 ENSMUST00000027507 Pdcd1 protein_coding Interval_106918 chr3 101881019 101881870 + 0 NA intron (ENSMUSG00000033147.16, intron 2 of 8) protein_coding-intron (ENSMUSG00000033147.16, intron 5 of 11) -32485 ENSMUSG00000044313.13 ENSMUSG00000044313 ENSMUST00000118411 Mab21l3 protein_coding Interval_63454 chr15 101185523 101185794 + 0 NA intron (ENSMUSG00000000532.11, intron 1 of 8) protein_coding-intron (ENSMUSG00000000532.11, intron 1 of 8) -8211 ENSMUSG00000106563.1 ENSMUSG00000106563 ENSMUST00000199512 Mir6962 miRNA Interval_96075 chr2 119617961 119619274 + 0 NA promoter-TSS (ENSMUSG00000027306.15) protein_coding-promoter-TSS (ENSMUSG00000027306.15) -77 ENSMUSG00000027306.15 ENSMUSG00000027306 ENSMUST00000125491 Nusap1 protein_coding Interval_109872 chr3 149251945 149252748 + 0 NA Intergenic Intergenic -26601 ENSMUSG00000070342.3 ENSMUSG00000070342 ENSMUST00000093950 Gm10287 lincRNA Interval_13150 chr10 12541603 12543661 + 0 NA intron (ENSMUSG00000019820.11, intron 51 of 74) protein_coding-intron (ENSMUSG00000019820.11, intron 50 of 73) -121036 ENSMUSG00000112816.1 ENSMUSG00000112816 ENSMUST00000220361 Gm48798 TEC Interval_64141 chr16 8692579 8693495 + 0 NA exon (ENSMUSG00000022710.17, exon 26 of 31) protein_coding-exon (ENSMUSG00000022710.17, exon 26 of 31) 5495 ENSMUSG00000022710.17 ENSMUSG00000022710 ENSMUST00000159509 Usp7 protein_coding Interval_113940 chr4 60192595 60193077 + 0 NA Intergenic Intergenic 29763 ENSMUSG00000078687.9 ENSMUSG00000078687 ENSMUST00000095058 Mup8 protein_coding Interval_37397 chr12 66591474 66592403 + 0 NA intron (ENSMUSG00000034912.18, intron 2 of 6) protein_coding-intron (ENSMUSG00000034912.18, intron 8 of 16) -30566 ENSMUSG00000088019.1 ENSMUSG00000088019 ENSMUST00000157394 Gm23826 snoRNA Interval_121466 chr4 155991373 155993676 + 0 NA promoter-TSS (ENSMUSG00000029076.14) protein_coding-promoter-TSS (ENSMUSG00000029076.14) 125 ENSMUSG00000050796.4 ENSMUSG00000050796 ENSMUST00000052185 B3galt6 protein_coding Interval_131774 chr5 139797758 139798038 + 0 NA exon (ENSMUSG00000018143.10, exon 1 of 3) protein_coding-exon (ENSMUSG00000018143.10, exon 1 of 3) 6364 ENSMUSG00000018143.10 ENSMUSG00000018143 ENSMUST00000110836 Mafk protein_coding Interval_82164 chr18 68218284 68219908 + 0 NA intron (ENSMUSG00000024544.9, intron 3 of 5) protein_coding-intron (ENSMUSG00000024544.9, intron 3 of 5) -8971 ENSMUSG00000024544.9 ENSMUSG00000024544 ENSMUST00000236987 Ldlrad4 protein_coding Interval_64215 chr16 9241387 9242410 + 0 NA Intergenic Intergenic 83128 ENSMUSG00000116123.1 ENSMUSG00000116123 ENSMUST00000229655 Gm49451 lincRNA Interval_13651 chr10 20428832 20429290 + 0 NA intron (ENSMUSG00000019990.15, intron 9 of 13) protein_coding-intron (ENSMUSG00000019990.15, intron 8 of 12) 17830 ENSMUSG00000019990.15 ENSMUSG00000019990 ENSMUST00000166147 Pde7b protein_coding Interval_89083 chr2 15968593 15968910 + 0 NA intron (ENSMUSG00000075520.5, intron 27 of 38) protein_coding-intron (ENSMUSG00000075520.5, intron 27 of 38) 11826 ENSMUSG00000081245.2 ENSMUSG00000081245 ENSMUST00000120219 Gm6587 processed_pseudogene Interval_166390 chr9 58841659 58842119 + 0 NA intron (ENSMUSG00000032338.9, intron 1 of 7) protein_coding-intron (ENSMUSG00000032338.9, intron 1 of 7) 18477 ENSMUSG00000032338.9 ENSMUSG00000032338 ENSMUST00000034889 Hcn4 protein_coding Interval_161357 chr8 119928812 119929085 + 0 NA intron (ENSMUSG00000092329.1, intron 1 of 15) protein_coding-intron (ENSMUSG00000031826.20, intron 1 of 6) -17452 ENSMUSG00000031826.20 ENSMUSG00000031826 ENSMUST00000139648 Usp10 protein_coding Interval_129980 chr5 123489231 123490473 + 0 NA promoter-TSS (ENSMUSG00000029437.12) protein_coding-promoter-TSS (ENSMUSG00000029437.12) 547 ENSMUSG00000063409.12 ENSMUSG00000063409 ENSMUST00000121444 Lrrc43 protein_coding Interval_23714 chr11 25148254 25148657 + 0 NA Intergenic Intergenic -84171 ENSMUSG00000033015.16 ENSMUSG00000033015 ENSMUST00000044347 4933427E13Rik lincRNA Interval_88876 chr2 11943139 11943895 + 0 NA Intergenic Intergenic 43435 ENSMUSG00000103542.1 ENSMUSG00000103542 ENSMUST00000193884 Gm34768 unprocessed_pseudogene Interval_170281 chr9 106655603 106656987 + 0 NA promoter-TSS (ENSMUSG00000023192.12) protein_coding-promoter-TSS (ENSMUSG00000023192.12) -9682 ENSMUSG00000023192.12 ENSMUSG00000023192 ENSMUST00000201955 Grm2 protein_coding Interval_147785 chr7 73546638 73547258 + 0 NA promoter-TSS (ENSMUSG00000101970.8) processed_transcript-promoter-TSS (ENSMUSG00000101970.8) 8935 ENSMUSG00000108563.1 ENSMUSG00000108563 ENSMUST00000206776 Gm44686 antisense Interval_14175 chr10 28325610 28326380 + 0 NA intron (ENSMUSG00000019889.10, intron 3 of 14) protein_coding-intron (ENSMUSG00000019889.10, intron 3 of 31) -111874 ENSMUSG00000076377.1 ENSMUSG00000076377 ENSMUST00000102422 Gm22370 miRNA Interval_162342 chr8 127272470 127272752 + 0 NA intron (ENSMUSG00000025812.18, intron 1 of 1) protein_coding-intron (ENSMUSG00000025812.18, intron 2 of 23) 101207 ENSMUSG00000025812.18 ENSMUSG00000025812 ENSMUST00000159940 Pard3 protein_coding Interval_97259 chr2 132697440 132698594 + 0 NA promoter-TSS (ENSMUSG00000044991.10) protein_coding-promoter-TSS (ENSMUSG00000044991.10) 506 ENSMUSG00000084839.1 ENSMUSG00000084839 ENSMUST00000147868 Gm14097 antisense Interval_84237 chr19 8959479 8959825 + 0 NA intron (ENSMUSG00000071645.6, intron 3 of 4) protein_coding-intron (ENSMUSG00000071645.6, intron 3 of 8) -4192 ENSMUSG00000071645.6 ENSMUSG00000071645 ENSMUST00000237611 Tut1 protein_coding Interval_123749 chr5 35145555 35145868 + 0 NA Intergenic Intergenic -43197 ENSMUSG00000029103.16 ENSMUSG00000029103 ENSMUST00000132754 Lrpap1 protein_coding Interval_173867 chrX 106198599 106199319 + 0 NA intron (ENSMUSG00000062070.12, intron 6 of 10) protein_coding-intron (ENSMUSG00000062070.12, intron 6 of 10) 11796 ENSMUSG00000062070.12 ENSMUSG00000062070 ENSMUST00000133559 Pgk1 protein_coding Interval_95713 chr2 114624796 114624997 + 0 NA intron (ENSMUSG00000057147.13, intron 3 of 6) protein_coding-intron (ENSMUSG00000057147.13, intron 3 of 7) -29529 ENSMUSG00000084785.1 ENSMUSG00000084785 ENSMUST00000153726 Gm13972 processed_transcript Interval_59624 chr15 56692295 56693611 + 0 NA promoter-TSS (ENSMUSG00000086541.8) processed_transcript-promoter-TSS (ENSMUSG00000086541.8) -599 ENSMUSG00000086541.8 ENSMUSG00000086541 ENSMUST00000165880 Has2os processed_transcript Interval_51985 chr14 34439797 34440148 + 0 NA intron (ENSMUSG00000021796.15, intron 4 of 10) protein_coding-intron (ENSMUSG00000021796.15, intron 5 of 12) -61743 ENSMUSG00000090779.1 ENSMUSG00000090779 ENSMUST00000171248 Gm17110 antisense Interval_21380 chr10 128275152 128275778 + 0 NA intron (ENSMUSG00000040033.16, intron 1 of 3) protein_coding-intron (ENSMUSG00000040033.16, intron 1 of 23) 7468 ENSMUSG00000047631.4 ENSMUSG00000047631 ENSMUST00000050901 Apof protein_coding Interval_10371 chr1 170079348 170080053 + 0 NA intron (ENSMUSG00000026674.9, intron 2 of 3) protein_coding-intron (ENSMUSG00000026674.9, intron 2 of 17) 31062 ENSMUSG00000026674.9 ENSMUSG00000026674 ENSMUST00000194619 Ddr2 protein_coding Interval_35318 chr12 20512372 20512633 + 0 NA TTS (ENSMUSG00000113026.1) processed_pseudogene-TTS (ENSMUSG00000113026.1) 452 ENSMUSG00000113026.1 ENSMUSG00000113026 ENSMUST00000221690 Gm48669 processed_pseudogene Interval_4348 chr1 72858835 72859362 + 0 NA exon (ENSMUSG00000026185.8, exon 4 of 4) protein_coding-exon (ENSMUSG00000026185.8, exon 4 of 4) 10399 ENSMUSG00000039323.18 ENSMUSG00000039323 ENSMUST00000155703 Igfbp2 protein_coding Interval_19820 chr10 109683499 109685038 + 0 NA intron (ENSMUSG00000020181.18, intron 40 of 40) protein_coding-intron (ENSMUSG00000020181.18, intron 38 of 38) 35489 ENSMUSG00000112260.1 ENSMUSG00000112260 ENSMUST00000219153 3110043J17Rik TEC Interval_165066 chr9 44264725 44265169 + 0 NA intron (ENSMUSG00000032109.15, intron 3 of 4) protein_coding-intron (ENSMUSG00000032109.15, intron 3 of 9) 1584 ENSMUSG00000032109.15 ENSMUSG00000032109 ENSMUST00000213803 Nlrx1 protein_coding Interval_106727 chr3 100135812 100136122 + 0 NA intron (ENSMUSG00000027867.10, intron 48 of 48) protein_coding-intron (ENSMUSG00000027867.10, intron 48 of 48) 26430 ENSMUSG00000033285.15 ENSMUSG00000033285 ENSMUST00000197602 Wdr3 protein_coding Interval_146749 chr7 49910339 49910650 + 0 NA promoter-TSS (ENSMUSG00000039728.15) protein_coding-promoter-TSS (ENSMUSG00000039728.15) 195 ENSMUSG00000039728.15 ENSMUSG00000039728 ENSMUST00000107605 Slc6a5 protein_coding Interval_143800 chr7 16392562 16393608 + 0 NA Intergenic Intergenic -5279 ENSMUSG00000052833.9 ENSMUSG00000052833 ENSMUST00000209749 Sae1 protein_coding Interval_140608 chr6 120064378 120066058 + 0 NA Intergenic Intergenic -28132 ENSMUSG00000041377.12 ENSMUSG00000041377 ENSMUST00000035244 Ninj2 protein_coding Interval_128001 chr5 110190982 110191276 + 0 NA intron (ENSMUSG00000029502.14, intron 7 of 23) protein_coding-intron (ENSMUSG00000029502.14, intron 7 of 23) 14250 ENSMUSG00000029502.14 ENSMUSG00000029502 ENSMUST00000125380 Golga3 protein_coding Interval_110340 chr3 157109086 157109855 + 0 NA intron (ENSMUSG00000040037.13, intron 4 of 6) protein_coding-intron (ENSMUSG00000040037.13, intron 4 of 6) 37726 ENSMUSG00000105803.1 ENSMUSG00000105803 ENSMUST00000196666 Gm43526 TEC Interval_94906 chr2 101602434 101603487 + 0 NA intron (ENSMUSG00000027165.16, intron 2 of 6) protein_coding-intron (ENSMUSG00000027165.16, intron 2 of 6) -21786 ENSMUSG00000032864.4 ENSMUSG00000032864 ENSMUST00000111227 Rag2 protein_coding Interval_148395 chr7 81008252 81009170 + 0 NA intron (ENSMUSG00000005621.11, intron 1 of 9) protein_coding-intron (ENSMUSG00000005621.11, intron 1 of 9) 14028 ENSMUSG00000109302.1 ENSMUSG00000109302 ENSMUST00000207047 Gm44967 TEC Interval_15695 chr10 53639125 53639384 + 0 NA promoter-TSS (ENSMUSG00000019856.14) protein_coding-promoter-TSS (ENSMUSG00000019856.14) 8444 ENSMUSG00000019856.14 ENSMUSG00000019856 ENSMUST00000170839 Fam184a protein_coding Interval_108511 chr3 127831014 127831671 + 0 NA exon (ENSMUSG00000105804.1, exon 1 of 1) TEC-exon (ENSMUSG00000105804.1, exon 1 of 1) 1629 ENSMUSG00000105804.1 ENSMUSG00000105804 ENSMUST00000200664 Gm43654 TEC Interval_169880 chr9 102709519 102710297 + 0 NA Intergenic Intergenic -8660 ENSMUSG00000032531.15 ENSMUSG00000032531 ENSMUST00000136934 Amotl2 protein_coding Interval_10291 chr1 168127912 168128244 + 0 NA intron (ENSMUSG00000052534.15, intron 7 of 7) protein_coding-intron (ENSMUSG00000052534.15, intron 7 of 7) 123939 ENSMUSG00000093538.2 ENSMUSG00000093538 ENSMUST00000177351 Gm20711 antisense Interval_172027 chr9 123638379 123639503 + 0 NA intron (ENSMUSG00000036814.13, intron 8 of 9) protein_coding-intron (ENSMUSG00000036814.13, intron 9 of 10) 3553 ENSMUSG00000091172.1 ENSMUSG00000091172 ENSMUST00000164734 Gm17120 antisense Interval_139901 chr6 112534861 112535580 + 0 NA Intergenic Intergenic 21773 ENSMUSG00000099205.1 ENSMUSG00000099205 ENSMUST00000185155 Gm27944 snRNA Interval_131601 chr5 138689789 138690003 + 0 NA Intergenic Intergenic -35499 ENSMUSG00000103298.1 ENSMUSG00000103298 ENSMUST00000193602 Gm38232 TEC Interval_52762 chr14 49459114 49459412 + 0 NA intron (ENSMUSG00000021852.14, intron 1 of 2) protein_coding-intron (ENSMUSG00000021852.14, intron 1 of 7) 60906 ENSMUSG00000089416.1 ENSMUSG00000089416 ENSMUST00000158791 Gm22116 snRNA Interval_115780 chr4 104089326 104090125 + 0 NA intron (ENSMUSG00000028519.16, intron 2 of 3) protein_coding-intron (ENSMUSG00000028519.16, intron 2 of 9) 148766 ENSMUSG00000081696.2 ENSMUSG00000081696 ENSMUST00000118427 Gm12717 processed_pseudogene Interval_6366 chr1 106407274 106408033 + 0 NA Intergenic Intergenic -5666 ENSMUSG00000100247.1 ENSMUSG00000100247 ENSMUST00000187918 A530053M12Rik lincRNA Interval_1204 chr1 17057136 17058916 + 0 NA intron (ENSMUSG00000101640.1, intron 2 of 2) protein_coding-intron (ENSMUSG00000042686.5, intron 2 of 4) -53807 ENSMUSG00000042686.5 ENSMUSG00000042686 ENSMUST00000038382 Jph1 protein_coding Interval_108823 chr3 131976083 131976518 + 0 NA intron (ENSMUSG00000105331.1, intron 2 of 3) lincRNA-intron (ENSMUSG00000105331.1, intron 2 of 3) 58041 ENSMUSG00000087877.1 ENSMUSG00000087877 ENSMUST00000157252 Gm26103 snRNA Interval_26009 chr11 53456546 53457852 + 0 NA promoter-TSS (ENSMUSG00000018387.12) protein_coding-promoter-TSS (ENSMUSG00000018387.12) -89 ENSMUSG00000072963.2 ENSMUSG00000072963 ENSMUST00000084653 Gm10447 bidirectional_promoter_lncRNA Interval_85574 chr19 28720101 28720572 + 0 NA TTS (ENSMUSG00000097735.7) lincRNA-TTS (ENSMUSG00000097735.7) 22215 ENSMUSG00000067351.1 ENSMUSG00000067351 ENSMUST00000087473 Rps15a-ps2 processed_pseudogene Interval_31977 chr11 104286925 104287328 + 0 NA exon (ENSMUSG00000018411.17, exon 3 of 12) protein_coding-exon (ENSMUSG00000018411.17, exon 3 of 12) -27765 ENSMUSG00000085134.1 ENSMUSG00000085134 ENSMUST00000137561 Gm11659 antisense Interval_67178 chr16 44154628 44154952 + 0 NA intron (ENSMUSG00000022698.17, intron 2 of 5) protein_coding-intron (ENSMUSG00000022698.17, intron 1 of 4) 14937 ENSMUSG00000022698.17 ENSMUSG00000022698 ENSMUST00000063542 Naa50 protein_coding Interval_158189 chr8 79649453 79651008 + 0 NA intron (ENSMUSG00000036990.13, intron 3 of 20) protein_coding-intron (ENSMUSG00000036990.13, intron 3 of 20) -10854 ENSMUSG00000036990.13 ENSMUSG00000036990 ENSMUST00000172614 Otud4 protein_coding Interval_132178 chr5 143134036 143134832 + 0 NA TTS (ENSMUSG00000090981.6) protein_coding-TTS (ENSMUSG00000090981.6) 3766 ENSMUSG00000090981.6 ENSMUSG00000090981 ENSMUST00000218872 Olfr718-ps1 protein_coding Interval_153297 chr7 143444779 143446631 + 0 NA Intergenic Intergenic -1900 ENSMUSG00000099103.1 ENSMUSG00000099103 ENSMUST00000184559 Gm27901 misc_RNA Interval_111260 chr4 16114996 16115567 + 0 NA Intergenic Intergenic 5607 ENSMUSG00000081679.1 ENSMUSG00000081679 ENSMUST00000117437 Gm11874 processed_pseudogene Interval_3714 chr1 61606478 61606730 + 0 NA Intergenic Intergenic 14545 ENSMUSG00000086009.1 ENSMUSG00000086009 ENSMUST00000128588 4930587A21Rik lincRNA Interval_93599 chr2 74735073 74736530 + 0 NA promoter-TSS (ENSMUSG00000079277.9) protein_coding-promoter-TSS (ENSMUSG00000079277.9) 9073 ENSMUSG00000100642.1 ENSMUSG00000100642 ENSMUST00000053932 Gm28230 protein_coding Interval_36718 chr12 52477869 52478060 + 0 NA intron (ENSMUSG00000111982.1, intron 2 of 2) lincRNA-intron (ENSMUSG00000111982.1, intron 2 of 2) 2645 ENSMUSG00000111982.1 ENSMUSG00000111982 ENSMUST00000219885 Gm35135 lincRNA Interval_152156 chr7 130235847 130237201 + 0 NA intron (ENSMUSG00000030849.18, intron 1 of 14) protein_coding-intron (ENSMUSG00000030849.18, intron 1 of 14) 29731 ENSMUSG00000030849.18 ENSMUSG00000030849 ENSMUST00000208844 Fgfr2 protein_coding Interval_95674 chr2 113984692 113985837 + 0 NA Intergenic Intergenic -28303 ENSMUSG00000092201.7 ENSMUSG00000092201 ENSMUST00000140041 A530058N18Rik processed_transcript Interval_78344 chr18 12078744 12079472 + 0 NA intron (ENSMUSG00000049411.15, intron 3 of 12) protein_coding-intron (ENSMUSG00000049411.15, intron 3 of 12) 42372 ENSMUSG00000049411.15 ENSMUSG00000049411 ENSMUST00000234833 Tmem241 protein_coding Interval_86232 chr19 37985988 37986877 + 0 NA intron (ENSMUSG00000048612.16, intron 6 of 9) protein_coding-intron (ENSMUSG00000048612.16, intron 6 of 52) 56967 ENSMUSG00000048612.16 ENSMUSG00000048612 ENSMUST00000226084 Myof protein_coding Interval_10112 chr1 165874208 165875205 + 0 NA TTS (ENSMUSG00000026565.18) protein_coding-TTS (ENSMUSG00000026565.18) 5454 ENSMUSG00000026565.18 ENSMUSG00000026565 ENSMUST00000176800 Pou2f1 protein_coding Interval_7833 chr1 134043648 134043998 + 0 NA intron (ENSMUSG00000041559.7, intron 2 of 2) protein_coding-intron (ENSMUSG00000041559.7, intron 2 of 2) 6327 ENSMUSG00000041559.7 ENSMUSG00000041559 ENSMUST00000162779 Fmod protein_coding Interval_67794 chr16 57251720 57252396 + 0 NA Intergenic Intergenic 13747 ENSMUSG00000116675.1 ENSMUSG00000116675 ENSMUST00000231600 Gm49581 processed_pseudogene Interval_78123 chr18 8750144 8750345 + 0 NA Intergenic Intergenic -51888 ENSMUSG00000093342.1 ENSMUSG00000093342 ENSMUST00000175601 Gm26119 miRNA Interval_67761 chr16 56919892 56920917 + 0 NA intron (ENSMUSG00000109588.1, intron 1 of 2) protein_coding-intron (ENSMUSG00000109588.1, intron 1 of 2) 7657 ENSMUSG00000109588.1 ENSMUSG00000109588 ENSMUST00000210579 Lnp1 protein_coding Interval_119858 chr4 140539292 140539572 + 0 NA intron (ENSMUSG00000040964.16, intron 11 of 15) protein_coding-intron (ENSMUSG00000040964.16, intron 24 of 27) 77633 ENSMUSG00000040964.16 ENSMUSG00000040964 ENSMUST00000154979 Arhgef10l protein_coding Interval_109785 chr3 146994310 146995260 + 0 NA Intergenic Intergenic 50865 ENSMUSG00000036745.15 ENSMUSG00000036745 ENSMUST00000197547 Ttll7 protein_coding Interval_40719 chr12 107903944 107905036 + 0 NA Intergenic Intergenic 98924 ENSMUSG00000048251.15 ENSMUSG00000048251 ENSMUST00000109891 Bcl11b protein_coding Interval_15955 chr10 59603498 59604068 + 0 NA intron (ENSMUSG00000009647.13, intron 1 of 1) protein_coding-intron (ENSMUSG00000009647.13, intron 1 of 7) -12281 ENSMUSG00000071280.2 ENSMUSG00000071280 ENSMUST00000238281 Gm10322 antisense Interval_48991 chr13 106785727 106786165 + 0 NA Intergenic Intergenic -2124 ENSMUSG00000101308.1 ENSMUSG00000101308 ENSMUST00000187867 Gm28989 antisense Interval_69775 chr16 96200069 96200981 + 0 NA promoter-TSS (ENSMUSG00000040666.19) protein_coding-promoter-TSS (ENSMUSG00000040666.19) -146 ENSMUSG00000040666.19 ENSMUSG00000040666 ENSMUST00000233577 Sh3bgr protein_coding Interval_51045 chr14 21770276 21770577 + 0 NA intron (ENSMUSG00000021770.11, intron 1 of 5) protein_coding-intron (ENSMUSG00000021770.11, intron 1 of 5) 19878 ENSMUSG00000021770.11 ENSMUSG00000021770 ENSMUST00000142023 Samd8 protein_coding Interval_86648 chr19 42287916 42289011 + 0 NA promoter-TSS (ENSMUSG00000042401.8) protein_coding-promoter-TSS (ENSMUSG00000042401.8) -8293 ENSMUSG00000093234.1 ENSMUSG00000093234 ENSMUST00000175493 Mir3085 miRNA Interval_74301 chr17 48670129 48671289 + 0 NA Intergenic Intergenic 21998 ENSMUSG00000088483.1 ENSMUSG00000088483 ENSMUST00000157858 Gm23642 misc_RNA Interval_73066 chr17 34571753 34572977 + 0 NA intron (ENSMUSG00000015468.14, intron 9 of 30) protein_coding-intron (ENSMUSG00000015468.14, intron 9 of 29) -4228 ENSMUSG00000092406.1 ENSMUSG00000092406 ENSMUST00000172623 Gm20462 processed_pseudogene Interval_145687 chr7 37378109 37378563 + 0 NA intron (ENSMUSG00000043456.17, intron 3 of 3) protein_coding-intron (ENSMUSG00000043456.17, intron 3 of 3) -11706 ENSMUSG00000108507.1 ENSMUSG00000108507 ENSMUST00000206785 6720469O03Rik TEC Interval_44220 chr13 42339347 42339983 + 0 NA Intergenic Intergenic -34674 ENSMUSG00000113619.1 ENSMUSG00000113619 ENSMUST00000221433 Gm47118 antisense Interval_103333 chr3 38994928 38995254 + 0 NA intron (ENSMUSG00000046743.6, intron 10 of 16) protein_coding-intron (ENSMUSG00000046743.6, intron 10 of 16) 14590 ENSMUSG00000105910.1 ENSMUSG00000105910 ENSMUST00000196190 Gm43539 antisense Interval_126550 chr5 90194676 90195416 + 0 NA Intergenic Intergenic 20976 ENSMUSG00000035505.14 ENSMUSG00000035505 ENSMUST00000148480 Cox18 protein_coding Interval_128492 chr5 113630129 113631710 + 0 NA TTS (ENSMUSG00000042190.12) protein_coding-TTS (ENSMUSG00000042190.12) -14044 ENSMUSG00000085713.1 ENSMUSG00000085713 ENSMUST00000141710 Gm15736 antisense Interval_147928 chr7 75641565 75642972 + 0 NA intron (ENSMUSG00000066406.16, intron 2 of 3) protein_coding-intron (ENSMUSG00000066406.16, intron 8 of 36) -26605 ENSMUSG00000087896.1 ENSMUSG00000087896 ENSMUST00000157271 Gm25282 snRNA Interval_23919 chr11 28336551 28337370 + 0 NA Intergenic Intergenic 2854 ENSMUSG00000032889.7 ENSMUSG00000032889 ENSMUST00000042595 Gm6685 processed_pseudogene Interval_47044 chr13 74733313 74734184 + 0 NA intron (ENSMUSG00000021585.10, intron 15 of 20) protein_coding-intron (ENSMUSG00000021585.10, intron 15 of 30) 35113 ENSMUSG00000113015.1 ENSMUSG00000113015 ENSMUST00000222599 Gm6296 processed_pseudogene Interval_146046 chr7 43464944 43466646 + 0 NA promoter-TSS (ENSMUSG00000070604.5) protein_coding-promoter-TSS (ENSMUSG00000070604.5) 1118 ENSMUSG00000070604.5 ENSMUSG00000070604 ENSMUST00000203042 Vsig10l protein_coding Interval_62796 chr15 97054406 97056124 + 0 NA intron (ENSMUSG00000022464.14, intron 1 of 15) protein_coding-intron (ENSMUSG00000022464.14, intron 1 of 15) -35314 ENSMUSG00000022464.14 ENSMUSG00000022464 ENSMUST00000230907 Slc38a4 protein_coding Interval_24680 chr11 35864866 35865661 + 0 NA intron (ENSMUSG00000018849.6, intron 15 of 22) protein_coding-intron (ENSMUSG00000018849.6, intron 15 of 22) -11709 ENSMUSG00000018849.6 ENSMUSG00000018849 ENSMUST00000127086 Wwc1 protein_coding Interval_106422 chr3 96093723 96093959 + 0 NA Intergenic Intergenic 6970 ENSMUSG00000105995.1 ENSMUSG00000105995 ENSMUST00000199987 Gm43554 processed_pseudogene Interval_48318 chr13 98120298 98120768 + 0 NA intron (ENSMUSG00000021662.11, intron 2 of 34) protein_coding-intron (ENSMUSG00000021662.11, intron 2 of 35) -104116 ENSMUSG00000021662.11 ENSMUSG00000021662 ENSMUST00000224866 Arhgef28 protein_coding Interval_49265 chr13 109932792 109933044 + 0 NA intron (ENSMUSG00000021699.17, intron 1 of 9) protein_coding-intron (ENSMUSG00000021699.17, intron 6 of 14) 29109 ENSMUSG00000084651.1 ENSMUSG00000084651 ENSMUST00000122702 Mir1904 miRNA Interval_59234 chr15 49248939 49249628 + 0 NA Intergenic Intergenic 54946 ENSMUSG00000115775.1 ENSMUSG00000115775 ENSMUST00000228245 Gm41318 lincRNA Interval_98846 chr2 155517652 155518608 + 0 NA promoter-TSS (ENSMUSG00000027605.18) protein_coding-promoter-TSS (ENSMUSG00000027605.18) -11176 ENSMUSG00000027603.15 ENSMUSG00000027603 ENSMUST00000147601 Ggt7 protein_coding Interval_64450 chr16 11468441 11469954 + 0 NA intron (ENSMUSG00000071669.14, intron 13 of 20) protein_coding-intron (ENSMUSG00000071669.14, intron 6 of 13) 27109 ENSMUSG00000082653.1 ENSMUSG00000082653 ENSMUST00000117770 Gm15897 processed_pseudogene Interval_159680 chr8 96774454 96775019 + 0 NA Intergenic Intergenic 118607 ENSMUSG00000077938.1 ENSMUSG00000077938 ENSMUST00000104745 Gm24132 miRNA Interval_52921 chr14 52071111 52072034 + 0 NA TTS (ENSMUSG00000115541.1) processed_pseudogene-TTS (ENSMUSG00000115541.1) 355 ENSMUSG00000115541.1 ENSMUSG00000115541 ENSMUST00000227288 Gm49258 processed_pseudogene Interval_130217 chr5 125014317 125014939 + 0 NA Intergenic Intergenic 10433 ENSMUSG00000029478.16 ENSMUSG00000029478 ENSMUST00000199561 Ncor2 protein_coding Interval_103266 chr3 37654478 37654724 + 0 NA Intergenic Intergenic 9994 ENSMUSG00000106062.1 ENSMUSG00000106062 ENSMUST00000199414 Gm43820 TEC Interval_19804 chr10 109435936 109436212 + 0 NA Intergenic Intergenic -49587 ENSMUSG00000112253.1 ENSMUSG00000112253 ENSMUST00000219849 Gm47329 processed_pseudogene Interval_173332 chrX 80216015 80216447 + 0 NA Intergenic Intergenic -18992 ENSMUSG00000082346.1 ENSMUSG00000082346 ENSMUST00000118629 Gm6952 processed_pseudogene Interval_148865 chr7 89470405 89470792 + 0 NA Intergenic Intergenic -39409 ENSMUSG00000030623.4 ENSMUSG00000030623 ENSMUST00000208814 Prss23os antisense Interval_13004 chr10 9117321 9118207 + 0 NA Intergenic Intergenic -46289 ENSMUSG00000111077.1 ENSMUSG00000111077 ENSMUST00000216441 Gm48743 TEC Interval_71673 chr17 25299413 25299639 + 0 NA exon (ENSMUSG00000056399.2, exon 4 of 5) protein_coding-exon (ENSMUSG00000056399.2, exon 4 of 5) 1132 ENSMUSG00000056399.2 ENSMUSG00000056399 ENSMUST00000037453 Prss34 protein_coding Interval_174485 chrX 153304667 153306468 + 0 NA intron (ENSMUSG00000041649.13, intron 2 of 2) protein_coding-intron (ENSMUSG00000041649.13, intron 1 of 6) 68101 ENSMUSG00000041649.13 ENSMUSG00000041649 ENSMUST00000039545 Klf8 protein_coding Interval_145037 chr7 29587850 29588439 + 0 NA Intergenic Intergenic -14216 ENSMUSG00000100111.2 ENSMUSG00000100111 ENSMUST00000187265 A330087D11Rik lincRNA Interval_154511 chr8 18815318 18815787 + 0 NA Intergenic Intergenic -30725 ENSMUSG00000031467.10 ENSMUSG00000031467 ENSMUST00000033847 Agpat5 protein_coding Interval_148936 chr7 90179758 90179965 + 0 NA intron (ENSMUSG00000039361.11, intron 12 of 19) protein_coding-intron (ENSMUSG00000039361.11, intron 12 of 20) -6066 ENSMUSG00000109005.1 ENSMUSG00000109005 ENSMUST00000207822 Gm45221 TEC Interval_159317 chr8 93441619 93444206 + 0 NA Intergenic Intergenic -5738 ENSMUSG00000110695.1 ENSMUSG00000110695 ENSMUST00000211900 Gm45766 lincRNA Interval_51834 chr14 32599441 32600477 + 0 NA promoter-TSS (ENSMUSG00000041730.14) protein_coding-promoter-TSS (ENSMUSG00000041730.14) 1 ENSMUSG00000041730.14 ENSMUSG00000041730 ENSMUST00000228878 Prrxl1 protein_coding Interval_146666 chr7 49288515 49289132 + 0 NA intron (ENSMUSG00000052512.17, intron 1 of 10) protein_coding-intron (ENSMUSG00000052512.17, intron 1 of 37) -54651 ENSMUSG00000052512.17 ENSMUSG00000052512 ENSMUST00000183715 Nav2 protein_coding Interval_108757 chr3 131093363 131094002 + 0 NA Intergenic Intergenic 18408 ENSMUSG00000106086.1 ENSMUSG00000106086 ENSMUST00000196419 Lef1os1 antisense Interval_51309 chr14 26306175 26306474 + 0 NA Intergenic Intergenic 3619 ENSMUSG00000114921.1 ENSMUSG00000114921 ENSMUST00000223947 Gm18578 processed_pseudogene Interval_27163 chr11 63551384 63551749 + 0 NA Intergenic Intergenic 49357 ENSMUSG00000082256.1 ENSMUSG00000082256 ENSMUST00000119770 Gm12287 processed_pseudogene Interval_167836 chr9 72954122 72956165 + 0 NA Intergenic Intergenic -3642 ENSMUSG00000092192.7 ENSMUSG00000092192 ENSMUST00000034734 Dnaaf4 protein_coding Interval_158449 chr8 83784768 83785049 + 0 NA Intergenic Intergenic 31990 ENSMUSG00000084682.1 ENSMUSG00000084682 ENSMUST00000122733 Gm22024 misc_RNA Interval_14349 chr10 31312939 31314039 + 0 NA promoter-TSS (ENSMUSG00000000295.13) protein_coding-promoter-TSS (ENSMUSG00000000295.13) 84 ENSMUSG00000000295.13 ENSMUSG00000000295 ENSMUST00000159659 Hddc2 protein_coding Interval_97232 chr2 132449014 132449665 + 0 NA intron (ENSMUSG00000027345.6, intron 3 of 3) lincRNA-intron (ENSMUSG00000027345.6, intron 3 of 3) 24598 ENSMUSG00000027345.6 ENSMUSG00000027345 ENSMUST00000124095 4921508D12Rik lincRNA Interval_122390 chr5 21908046 21908911 + 0 NA intron (ENSMUSG00000042453.14, intron 57 of 64) protein_coding-intron (ENSMUSG00000042453.14, intron 57 of 63) -2453 ENSMUSG00000073152.4 ENSMUSG00000073152 ENSMUST00000084713 Gm10475 antisense Interval_125809 chr5 74382055 74383001 + 0 NA intron (ENSMUSG00000062110.14, intron 5 of 7) protein_coding-intron (ENSMUSG00000062110.14, intron 5 of 8) -12613 ENSMUSG00000107009.1 ENSMUSG00000107009 ENSMUST00000201755 6720475M21Rik TEC Interval_172567 chrX 36830383 36830861 + 0 NA intron (ENSMUSG00000006423.15, intron 6 of 6) protein_coding-intron (ENSMUSG00000006423.15, intron 6 of 6) 8671 ENSMUSG00000084265.1 ENSMUSG00000084265 ENSMUST00000118985 Gm14541 processed_pseudogene Interval_37810 chr12 72121736 72122197 + 0 NA promoter-TSS (ENSMUSG00000113976.1) processed_pseudogene-promoter-TSS (ENSMUSG00000113976.1) -171 ENSMUSG00000113976.1 ENSMUSG00000113976 ENSMUST00000220756 Gm18243 processed_pseudogene Interval_105842 chr3 89666956 89667703 + 0 NA exon (ENSMUSG00000000794.9, exon 8 of 8) protein_coding-exon (ENSMUSG00000000794.9, exon 8 of 8) 4811 ENSMUSG00000000794.9 ENSMUSG00000000794 ENSMUST00000124584 Kcnn3 protein_coding Interval_68920 chr16 88719682 88720847 + 0 NA Intergenic Intergenic -8598 ENSMUSG00000056350.7 ENSMUSG00000056350 ENSMUST00000060494 Krtap13-1 protein_coding Interval_29369 chr11 83478386 83479410 + 0 NA intron (ENSMUSG00000020680.15, intron 2 of 8) protein_coding-intron (ENSMUSG00000020680.15, intron 1 of 15) 5787 ENSMUSG00000020680.15 ENSMUSG00000020680 ENSMUST00000133170 Taf15 protein_coding Interval_55056 chr14 77541769 77543273 + 0 NA intron (ENSMUSG00000022012.9, intron 6 of 6) protein_coding-intron (ENSMUSG00000022012.9, intron 7 of 18) -1756 ENSMUSG00000089365.1 ENSMUSG00000089365 ENSMUST00000158740 Gm23823 snoRNA Interval_39305 chr12 86546846 86548383 + 0 NA Intergenic Intergenic 77497 ENSMUSG00000021255.17 ENSMUSG00000021255 ENSMUST00000136464 Esrrb protein_coding Interval_155721 chr8 36473076 36473446 + 0 NA intron (ENSMUSG00000039620.17, intron 1 of 5) protein_coding-intron (ENSMUSG00000039620.17, intron 2 of 6) -15930 ENSMUSG00000039620.17 ENSMUSG00000039620 ENSMUST00000125492 Trmt9b protein_coding Interval_167128 chr9 65527907 65528264 + 0 NA intron (ENSMUSG00000111818.1, intron 1 of 1) processed_transcript-intron (ENSMUSG00000111818.1, intron 1 of 1) 1721 ENSMUSG00000111818.1 ENSMUSG00000111818 ENSMUST00000216282 Gm17749 processed_transcript Interval_124370 chr5 44913897 44914485 + 0 NA Intergenic Intergenic 49042 ENSMUSG00000106656.1 ENSMUSG00000106656 ENSMUST00000199745 Gm42750 lincRNA Interval_84614 chr19 14449596 14450457 + 0 NA intron (ENSMUSG00000024642.17, intron 19 of 19) protein_coding-intron (ENSMUSG00000024642.17, intron 19 of 19) 145513 ENSMUSG00000024642.17 ENSMUSG00000024642 ENSMUST00000235975 Tle4 protein_coding Interval_41497 chr12 115240938 115241345 + 0 NA Intergenic Intergenic 2094 ENSMUSG00000094862.2 ENSMUSG00000094862 ENSMUST00000194071 Ighv1-56 IG_V_gene Interval_157976 chr8 77503652 77504622 + 0 NA intron (ENSMUSG00000037148.8, intron 1 of 21) protein_coding-intron (ENSMUSG00000037148.8, intron 1 of 22) -12919 ENSMUSG00000097882.2 ENSMUSG00000097882 ENSMUST00000181420 0610038B21Rik antisense Interval_59997 chr15 63601181 63601803 + 0 NA intron (ENSMUSG00000115520.2, intron 2 of 8) lincRNA-intron (ENSMUSG00000115520.2, intron 2 of 8) -30205 ENSMUSG00000095812.1 ENSMUSG00000095812 ENSMUST00000179326 Gm5473 processed_pseudogene Interval_50081 chr14 7858480 7858699 + 0 NA intron (ENSMUSG00000025278.9, intron 1 of 45) protein_coding-intron (ENSMUSG00000025278.9, intron 1 of 45) -26152 ENSMUSG00000025278.9 ENSMUSG00000025278 ENSMUST00000228206 Flnb protein_coding Interval_159999 chr8 105663639 105664006 + 0 NA TTS (ENSMUSG00000005698.15) protein_coding-TTS (ENSMUSG00000005698.15) -3035 ENSMUSG00000080021.5 ENSMUSG00000080021 ENSMUST00000116136 Gm5915 processed_pseudogene Interval_66753 chr16 37019993 37020538 + 0 NA intron (ENSMUSG00000034206.15, intron 5 of 25) protein_coding-intron (ENSMUSG00000034206.15, intron 4 of 29) 8479 ENSMUSG00000034206.15 ENSMUSG00000034206 ENSMUST00000182717 Polq protein_coding Interval_126423 chr5 88397704 88398959 + 0 NA Intergenic Intergenic 22223 ENSMUSG00000029282.3 ENSMUSG00000029282 ENSMUST00000073363 Amtn protein_coding Interval_106377 chr3 95754215 95755397 + 0 NA promoter-TSS (ENSMUSG00000028107.14) protein_coding-promoter-TSS (ENSMUSG00000028107.14) -12660 ENSMUSG00000028107.14 ENSMUSG00000028107 ENSMUST00000197501 Tars2 protein_coding Interval_156335 chr8 47505679 47505871 + 0 NA intron (ENSMUSG00000038102.15, intron 18 of 28) protein_coding-intron (ENSMUSG00000038102.15, intron 19 of 29) 22255 ENSMUSG00000038102.15 ENSMUSG00000038102 ENSMUST00000131551 Trappc11 protein_coding Interval_163859 chr9 27202815 27203787 + 0 NA promoter-TSS (ENSMUSG00000110836.1) lincRNA-promoter-TSS (ENSMUSG00000110836.1) -3 ENSMUSG00000110836.1 ENSMUSG00000110836 ENSMUST00000216094 Gm48801 lincRNA Interval_61029 chr15 78851215 78852393 + 0 NA TTS (ENSMUSG00000049521.2) protein_coding-TTS (ENSMUSG00000049521.2) 3725 ENSMUSG00000043501.5 ENSMUSG00000043501 ENSMUST00000044584 Lgals2 protein_coding Interval_153000 chr7 140733444 140733658 + 0 NA Intergenic Intergenic 16078 ENSMUSG00000110199.2 ENSMUSG00000110199 ENSMUST00000211706 Olfr542-ps1 transcribed_unprocessed_pseudogene Interval_130430 chr5 127577554 127579239 + 0 NA promoter-TSS (ENSMUSG00000106015.1) lincRNA-promoter-TSS (ENSMUSG00000106015.1) -354 ENSMUSG00000106015.1 ENSMUSG00000106015 ENSMUST00000200582 Gm42980 lincRNA Interval_10795 chr1 174999762 175000036 + 0 NA Intergenic Intergenic -78080 ENSMUSG00000050069.3 ENSMUSG00000050069 ENSMUST00000055294 Grem2 protein_coding Interval_166453 chr9 59597730 59598110 + 0 NA intron (ENSMUSG00000032297.11, intron 3 of 10) protein_coding-intron (ENSMUSG00000032297.11, intron 3 of 11) -4738 ENSMUSG00000032297.11 ENSMUSG00000032297 ENSMUST00000129728 Celf6 protein_coding Interval_164944 chr9 43270665 43271493 + 0 NA intron (ENSMUSG00000095385.3, intron 1 of 1) lincRNA-intron (ENSMUSG00000095385.3, intron 2 of 2) 5800 ENSMUSG00000095385.3 ENSMUSG00000095385 ENSMUST00000210037 D630033O11Rik lincRNA Interval_17528 chr10 77523026 77523981 + 0 NA Intergenic Intergenic -6871 ENSMUSG00000000290.13 ENSMUSG00000000290 ENSMUST00000153541 Itgb2 protein_coding Interval_79063 chr18 24248018 24248587 + 0 NA intron (ENSMUSG00000000420.15, intron 1 of 4) protein_coding-intron (ENSMUSG00000000420.15, intron 4 of 12) -9076 ENSMUSG00000091363.1 ENSMUSG00000091363 ENSMUST00000163185 Gm7701 processed_pseudogene Interval_17094 chr10 71324195 71324510 + 0 NA Intergenic Intergenic 5586 ENSMUSG00000112582.1 ENSMUSG00000112582 ENSMUST00000219540 Rpl19-ps2 processed_pseudogene Interval_64581 chr16 13467162 13467419 + 0 NA promoter-TSS (ENSMUSG00000087526.2) antisense-promoter-TSS (ENSMUSG00000087526.2) 1455 ENSMUSG00000087526.2 ENSMUSG00000087526 ENSMUST00000210237 Gm15738 antisense Interval_100454 chr2 169093698 169094340 + 0 NA Intergenic Intergenic -12434 ENSMUSG00000086238.1 ENSMUSG00000086238 ENSMUST00000144607 Gm14258 lincRNA Interval_154766 chr8 23207748 23209025 + 0 NA promoter-TSS (ENSMUSG00000031545.6) protein_coding-promoter-TSS (ENSMUSG00000031545.6) -41 ENSMUSG00000031545.6 ENSMUSG00000031545 ENSMUST00000209507 Gpat4 protein_coding Interval_139111 chr6 95263416 95263711 + 0 NA intron (ENSMUSG00000068180.13, intron 5 of 5) lincRNA-intron (ENSMUSG00000068180.13, intron 5 of 5) 13262 ENSMUSG00000107900.1 ENSMUSG00000107900 ENSMUST00000203096 Gm5723 processed_pseudogene Interval_81650 chr18 62853966 62854174 + 0 NA Intergenic Intergenic 68031 ENSMUSG00000117671.1 ENSMUSG00000117671 ENSMUST00000237856 Gm50128 bidirectional_promoter_lncRNA Interval_59679 chr15 57871711 57871915 + 0 NA exon (ENSMUSG00000022365.6, exon 8 of 8) protein_coding-exon (ENSMUSG00000022365.6, exon 8 of 8) 18581 ENSMUSG00000022365.6 ENSMUSG00000022365 ENSMUST00000226911 Derl1 protein_coding Interval_87881 chr19 56826000 56826504 + 0 NA promoter-TSS (ENSMUSG00000025081.13) protein_coding-promoter-TSS (ENSMUSG00000025081.13) -34 ENSMUSG00000025081.13 ENSMUSG00000025081 ENSMUST00000111604 Tdrd1 protein_coding Interval_35408 chr12 21416986 21418078 + 0 NA promoter-TSS (ENSMUSG00000076432.13) protein_coding-promoter-TSS (ENSMUSG00000076432.13) 56 ENSMUSG00000076432.13 ENSMUSG00000076432 ENSMUST00000146206 Ywhaq protein_coding Interval_78426 chr18 12749601 12749944 + 0 NA intron (ENSMUSG00000024430.14, intron 3 of 4) protein_coding-intron (ENSMUSG00000024430.14, intron 3 of 5) -6513 ENSMUSG00000083332.1 ENSMUSG00000083332 ENSMUST00000121453 Gm7599 processed_pseudogene Interval_116888 chr4 117992137 117992424 + 0 NA intron (ENSMUSG00000086554.1, intron 2 of 2) protein_coding-intron (ENSMUSG00000028538.12, intron 5 of 11) 17244 ENSMUSG00000086554.1 ENSMUSG00000086554 ENSMUST00000146982 9530034E10Rik antisense Interval_70765 chr17 14233793 14234045 + 0 NA Intergenic Intergenic -15932 ENSMUSG00000117254.1 ENSMUSG00000117254 ENSMUST00000233271 Gm34567 lincRNA Interval_164927 chr9 43166473 43166690 + 0 NA intron (ENSMUSG00000032015.16, intron 3 of 12) protein_coding-intron (ENSMUSG00000032015.16, intron 3 of 12) -23377 ENSMUSG00000032015.16 ENSMUSG00000032015 ENSMUST00000213862 Pou2f3 protein_coding Interval_58584 chr15 36380891 36381832 + 0 NA promoter-TSS (ENSMUSG00000114981.1) lincRNA-promoter-TSS (ENSMUSG00000114981.1) 6312 ENSMUSG00000115278.1 ENSMUSG00000115278 ENSMUST00000226399 Gm34150 lincRNA Interval_117822 chr4 126428900 126430068 + 0 NA promoter-TSS (ENSMUSG00000028842.15) protein_coding-promoter-TSS (ENSMUSG00000028842.15) -25149 ENSMUSG00000028842.15 ENSMUSG00000028842 ENSMUST00000123233 Ago3 protein_coding Interval_91594 chr2 44316839 44317038 + 0 NA intron (ENSMUSG00000049744.15, intron 12 of 14) protein_coding-intron (ENSMUSG00000049744.15, intron 12 of 13) -111997 ENSMUSG00000088124.1 ENSMUSG00000088124 ENSMUST00000157499 Gm22867 snRNA Interval_133462 chr6 5379685 5380728 + 0 NA Intergenic Intergenic -10221 ENSMUSG00000042607.15 ENSMUSG00000042607 ENSMUST00000183358 Asb4 protein_coding Interval_117035 chr4 119136063 119136951 + 0 NA exon (ENSMUSG00000028645.11, exon 10 of 10) protein_coding-exon (ENSMUSG00000028645.11, exon 10 of 10) 2294 ENSMUSG00000085505.1 ENSMUSG00000085505 ENSMUST00000143801 Gm12868 antisense Interval_130837 chr5 131108328 131108546 + 0 NA intron (ENSMUSG00000034040.16, intron 3 of 3) protein_coding-intron (ENSMUSG00000034040.16, intron 3 of 10) 26274 ENSMUSG00000106710.1 ENSMUSG00000106710 ENSMUST00000202871 Gm43166 sense_intronic Interval_67010 chr16 39984031 39985222 + 0 NA promoter-TSS (ENSMUSG00000061080.11) protein_coding-promoter-TSS (ENSMUSG00000061080.11) 240 ENSMUSG00000061080.11 ENSMUSG00000061080 ENSMUST00000133853 Lsamp protein_coding Interval_13545 chr10 19369507 19370636 + 0 NA Intergenic Intergenic 13538 ENSMUSG00000045591.6 ENSMUSG00000045591 ENSMUST00000053225 Olig3 protein_coding Interval_47734 chr13 91956133 91956504 + 0 NA intron (ENSMUSG00000021708.17, intron 5 of 14) protein_coding-intron (ENSMUSG00000021708.17, intron 24 of 33) -79433 ENSMUSG00000021622.3 ENSMUSG00000021622 ENSMUST00000022122 Ckmt2 protein_coding Interval_27652 chr11 69306246 69306971 + 0 NA intron (ENSMUSG00000032782.19, intron 12 of 17) protein_coding-intron (ENSMUSG00000032782.19, intron 13 of 18) 12457 ENSMUSG00000087003.1 ENSMUSG00000087003 ENSMUST00000132834 Cntrobos antisense Interval_138401 chr6 87876030 87877331 + 0 NA Intergenic Intergenic -17263 ENSMUSG00000030058.17 ENSMUSG00000030058 ENSMUST00000127614 Copg1 protein_coding Interval_42431 chr13 13477041 13478611 + 0 NA intron (ENSMUSG00000005397.8, intron 6 of 13) protein_coding-intron (ENSMUSG00000005397.8, intron 6 of 19) 4579 ENSMUSG00000113380.1 ENSMUSG00000113380 ENSMUST00000220813 Gm48682 antisense Interval_79667 chr18 34358014 34358698 + 0 NA intron (ENSMUSG00000005873.6, intron 1 of 3) protein_coding-intron (ENSMUSG00000005873.6, intron 2 of 4) 14142 ENSMUSG00000005873.6 ENSMUSG00000005873 ENSMUST00000235153 Reep5 protein_coding Interval_100341 chr2 168515796 168516060 + 0 NA intron (ENSMUSG00000027544.16, intron 4 of 8) protein_coding-intron (ENSMUSG00000027544.16, intron 6 of 9) 85727 ENSMUSG00000027544.16 ENSMUSG00000027544 ENSMUST00000138546 Nfatc2 protein_coding Interval_44321 chr13 43605620 43606031 + 0 NA Intergenic Intergenic -10158 ENSMUSG00000044164.2 ENSMUSG00000044164 ENSMUST00000161817 Rnf182 protein_coding Interval_40315 chr12 103544244 103544798 + 0 NA intron (ENSMUSG00000021209.12, intron 2 of 25) protein_coding-intron (ENSMUSG00000021209.12, intron 2 of 24) -36877 ENSMUSG00000021209.12 ENSMUSG00000021209 ENSMUST00000190151 Ppp4r4 protein_coding Interval_86443 chr19 40555759 40556656 + 0 NA TTS (ENSMUSG00000025007.13) protein_coding-TTS (ENSMUSG00000025007.13) 4851 ENSMUSG00000096592.1 ENSMUSG00000096592 ENSMUST00000120920 Gm15801 processed_pseudogene Interval_43798 chr13 36578090 36579813 + 0 NA intron (ENSMUSG00000021420.13, intron 6 of 7) protein_coding-intron (ENSMUSG00000021420.13, intron 6 of 7) -3017 ENSMUSG00000114387.1 ENSMUSG00000114387 ENSMUST00000224459 Gm48767 antisense Interval_52965 chr14 52338785 52339353 + 0 NA Intergenic Intergenic -3708 ENSMUSG00000064755.1 ENSMUSG00000064755 ENSMUST00000082821 Gm26328 snRNA Interval_24091 chr11 30176586 30177922 + 0 NA intron (ENSMUSG00000020315.18, intron 2 of 30) protein_coding-intron (ENSMUSG00000020315.18, intron 2 of 35) 70860 ENSMUSG00000101872.1 ENSMUSG00000101872 ENSMUST00000186216 Gm29237 antisense Interval_126719 chr5 92258811 92259290 + 0 NA TTS (ENSMUSG00000029413.14) protein_coding-TTS (ENSMUSG00000029413.14) 13498 ENSMUSG00000029413.14 ENSMUSG00000029413 ENSMUST00000161212 Naaa protein_coding Interval_46022 chr13 60296303 60296509 + 0 NA Intergenic Intergenic 2734 ENSMUSG00000080668.1 ENSMUSG00000080668 ENSMUST00000117018 Gm24999 miRNA Interval_8608 chr1 143788738 143789294 + 0 NA intron (ENSMUSG00000018189.12, intron 3 of 7) protein_coding-intron (ENSMUSG00000018189.12, intron 3 of 10) -5659 ENSMUSG00000018189.12 ENSMUSG00000018189 ENSMUST00000185539 Uchl5 protein_coding Interval_100493 chr2 169610159 169610452 + 0 NA Intergenic Intergenic 18013 ENSMUSG00000103662.1 ENSMUSG00000103662 ENSMUST00000191912 Gm34294 TEC Interval_21183 chr10 127096697 127096897 + 0 NA intron (ENSMUSG00000040462.13, intron 12 of 13) protein_coding-intron (ENSMUSG00000040462.13, intron 12 of 13) 21513 ENSMUSG00000025422.10 ENSMUSG00000025422 ENSMUST00000217941 Agap2 protein_coding Interval_130869 chr5 132817266 132818874 + 0 NA Intergenic Intergenic 16392 ENSMUSG00000088123.1 ENSMUSG00000088123 ENSMUST00000157498 Gm25722 misc_RNA Interval_102898 chr3 32644549 32645153 + 0 NA Intergenic Intergenic -28372 ENSMUSG00000027669.14 ENSMUSG00000027669 ENSMUST00000143588 Gnb4 protein_coding Interval_99574 chr2 163305805 163306640 + 0 NA intron (ENSMUSG00000074607.11, intron 3 of 8) protein_coding-intron (ENSMUSG00000074607.11, intron 3 of 8) 80768 ENSMUSG00000074607.11 ENSMUSG00000074607 ENSMUST00000148599 Tox2 protein_coding Interval_46050 chr13 60601530 60603209 + 0 NA intron (ENSMUSG00000021559.14, intron 1 of 2) protein_coding-intron (ENSMUSG00000021559.14, intron 1 of 26) 422 ENSMUSG00000021559.14 ENSMUSG00000021559 ENSMUST00000225952 Dapk1 protein_coding Interval_94495 chr2 91667412 91668439 + 0 NA promoter-TSS (ENSMUSG00000027247.16) protein_coding-promoter-TSS (ENSMUSG00000027247.16) 16427 ENSMUSG00000027247.16 ENSMUSG00000027247 ENSMUST00000149426 Arhgap1 protein_coding Interval_77211 chr17 87378299 87378975 + 0 NA promoter-TSS (ENSMUSG00000036918.16) protein_coding-promoter-TSS (ENSMUSG00000036918.16) -14175 ENSMUSG00000089755.1 ENSMUSG00000089755 ENSMUST00000159031 0610012D04Rik antisense Interval_2678 chr1 43264347 43264996 + 0 NA intron (ENSMUSG00000099576.1, intron 2 of 5) lincRNA-intron (ENSMUSG00000099576.1, intron 2 of 5) -6012 ENSMUSG00000099694.1 ENSMUSG00000099694 ENSMUST00000187749 Gm29610 processed_pseudogene Interval_137084 chr6 67235790 67239562 + 0 NA promoter-TSS (ENSMUSG00000036371.6) protein_coding-promoter-TSS (ENSMUSG00000036371.6) 2034 ENSMUSG00000107799.1 ENSMUSG00000107799 ENSMUST00000204022 Gm38825 antisense Interval_46985 chr13 73932234 73932490 + 0 NA intron (ENSMUSG00000021569.10, intron 2 of 4) protein_coding-intron (ENSMUSG00000021569.10, intron 3 of 12) 3835 ENSMUSG00000021569.10 ENSMUSG00000021569 ENSMUST00000223017 Trip13 protein_coding Interval_135008 chr6 34514704 34515232 + 0 NA Intergenic Intergenic -18585 ENSMUSG00000085187.1 ENSMUSG00000085187 ENSMUST00000125185 Gm13860 lincRNA Interval_97476 chr2 137082703 137083887 + 0 NA exon (ENSMUSG00000027276.7, exon 26 of 26) protein_coding-exon (ENSMUSG00000027276.7, exon 26 of 26) 2654 ENSMUSG00000027276.7 ENSMUSG00000027276 ENSMUST00000133640 Jag1 protein_coding Interval_58825 chr15 38342096 38342310 + 0 NA intron (ENSMUSG00000115456.1, intron 2 of 2) lincRNA-intron (ENSMUSG00000115456.1, intron 2 of 2) 29910 ENSMUSG00000115456.1 ENSMUSG00000115456 ENSMUST00000227097 Gm35248 lincRNA Interval_29264 chr11 82444358 82445963 + 0 NA exon (ENSMUSG00000020701.12, exon 9 of 9) protein_coding-exon (ENSMUSG00000020701.12, exon 9 of 9) 6903 ENSMUSG00000020701.12 ENSMUSG00000020701 ENSMUST00000202598 Tmem132e protein_coding Interval_28292 chr11 74952500 74953110 + 0 NA intron (ENSMUSG00000038290.15, intron 7 of 16) protein_coding-intron (ENSMUSG00000038290.15, intron 8 of 18) -16654 ENSMUSG00000088719.1 ENSMUSG00000088719 ENSMUST00000158094 Gm22733 snRNA Interval_120623 chr4 149743050 149743677 + 0 NA TTS (ENSMUSG00000028982.9) protein_coding-TTS (ENSMUSG00000028982.9) -5155 ENSMUSG00000085403.1 ENSMUSG00000085403 ENSMUST00000129397 Gm13068 antisense Interval_105516 chr3 87179293 87180300 + 0 NA Intergenic Intergenic -5096 ENSMUSG00000041734.15 ENSMUSG00000041734 ENSMUST00000041732 Kirrel protein_coding Interval_20909 chr10 121915222 121916109 + 0 NA intron (ENSMUSG00000020121.15, intron 3 of 3) protein_coding-intron (ENSMUSG00000020121.15, intron 3 of 21) -83607 ENSMUSG00000112596.1 ENSMUSG00000112596 ENSMUST00000218664 Gm48804 TEC Interval_116382 chr4 110899119 110899555 + 0 NA intron (ENSMUSG00000061298.14, intron 3 of 12) protein_coding-intron (ENSMUSG00000061298.14, intron 3 of 12) -385605 ENSMUSG00000082348.1 ENSMUSG00000082348 ENSMUST00000121546 Gm12807 processed_pseudogene Interval_75266 chr17 65570980 65571421 + 0 NA Intergenic Intergenic -10424 ENSMUSG00000117158.1 ENSMUSG00000117158 ENSMUST00000233030 Gm49866 processed_pseudogene Interval_95170 chr2 104514715 104514996 + 0 NA Intergenic Intergenic -22582 ENSMUSG00000081447.1 ENSMUSG00000081447 ENSMUST00000117214 Gm13870 processed_pseudogene Interval_35012 chr12 16641954 16642508 + 0 NA intron (ENSMUSG00000020593.16, intron 1 of 21) protein_coding-intron (ENSMUSG00000020593.16, intron 1 of 21) -11507 ENSMUSG00000020591.11 ENSMUSG00000020591 ENSMUST00000221049 Ntsr2 protein_coding Interval_29908 chr11 87685483 87686773 + 0 NA intron (ENSMUSG00000034177.15, intron 1 of 7) protein_coding-intron (ENSMUSG00000034177.15, intron 1 of 8) 8453 ENSMUSG00000087792.1 ENSMUSG00000087792 ENSMUST00000157167 Gm25968 snRNA Interval_72695 chr17 31588294 31589339 + 0 NA TTS (ENSMUSG00000006705.13) protein_coding-TTS (ENSMUSG00000006705.13) 339 ENSMUSG00000006705.13 ENSMUSG00000006705 ENSMUST00000176513 Pknox1 protein_coding Interval_120916 chr4 151604345 151605358 + 0 NA intron (ENSMUSG00000014592.21, intron 3 of 24) protein_coding-intron (ENSMUSG00000014592.21, intron 3 of 23) 228381 ENSMUSG00000085593.1 ENSMUSG00000085593 ENSMUST00000129097 4930589P08Rik antisense Interval_80976 chr18 51932274 51933394 + 0 NA Intergenic Intergenic -5324 ENSMUSG00000118334.1 ENSMUSG00000118334 ENSMUST00000237836 Gm50446 lincRNA Interval_25214 chr11 45435155 45435875 + 0 NA Intergenic Intergenic -14731 ENSMUSG00000085476.1 ENSMUSG00000085476 ENSMUST00000123422 Gm12162 lincRNA Interval_156368 chr8 47753054 47753481 + 0 NA Intergenic Intergenic -3133 ENSMUSG00000110665.1 ENSMUSG00000110665 ENSMUST00000212428 Gm31786 lincRNA Interval_164641 chr9 40237672 40237989 + 0 NA Intergenic Intergenic 38702 ENSMUSG00000111509.1 ENSMUSG00000111509 ENSMUST00000215330 Gm47266 TEC Interval_153126 chr7 141511995 141513399 + 0 NA intron (ENSMUSG00000025512.15, intron 4 of 4) protein_coding-intron (ENSMUSG00000025512.15, intron 8 of 10) 5906 ENSMUSG00000110400.1 ENSMUSG00000110400 ENSMUST00000209713 Gm45416 TEC Interval_152176 chr7 130406477 130407237 + 0 NA intron (ENSMUSG00000030850.17, intron 12 of 12) protein_coding-intron (ENSMUSG00000030850.17, intron 11 of 11) 50816 ENSMUSG00000108940.1 ENSMUSG00000108940 ENSMUST00000207954 Gm45719 TEC Interval_144896 chr7 28816141 28816525 + 0 NA exon (ENSMUSG00000015165.16, exon 6 of 6) protein_coding-exon (ENSMUSG00000015165.16, exon 6 of 6) 2988 ENSMUSG00000015165.16 ENSMUSG00000015165 ENSMUST00000174526 Hnrnpl protein_coding Interval_127899 chr5 108718708 108720186 + 0 NA Intergenic Intergenic 14373 ENSMUSG00000008090.14 ENSMUSG00000008090 ENSMUST00000199802 Fgfrl1 protein_coding Interval_102789 chr3 31030218 31030463 + 0 NA intron (ENSMUSG00000037643.14, intron 5 of 7) protein_coding-intron (ENSMUSG00000037643.14, intron 5 of 17) -8110 ENSMUSG00000037643.14 ENSMUSG00000037643 ENSMUST00000130706 Prkci protein_coding Interval_133995 chr6 17589280 17590464 + 0 NA Intergenic Intergenic -47163 ENSMUSG00000015733.13 ENSMUSG00000015733 ENSMUST00000142592 Capza2 protein_coding Interval_132119 chr5 142831907 142832802 + 0 NA Intergenic Intergenic 20845 ENSMUSG00000082308.1 ENSMUSG00000082308 ENSMUST00000117498 Gm15770 processed_pseudogene Interval_104709 chr3 69598306 69599408 + 0 NA exon (ENSMUSG00000043300.2, exon 1 of 3) protein_coding-exon (ENSMUSG00000043300.2, exon 1 of 3) 103 ENSMUSG00000043300.2 ENSMUSG00000043300 ENSMUST00000061826 B3galnt1 protein_coding Interval_85967 chr19 34290088 34291112 + 0 NA promoter-TSS (ENSMUSG00000024778.13) protein_coding-promoter-TSS (ENSMUSG00000024778.13) -3537 ENSMUSG00000098670.1 ENSMUSG00000098670 ENSMUST00000184536 Gm27818 misc_RNA Interval_26792 chr11 60515001 60515199 + 0 NA intron (ENSMUSG00000042678.17, intron 56 of 64) protein_coding-intron (ENSMUSG00000042678.17, intron 57 of 65) -21281 ENSMUSG00000042650.3 ENSMUSG00000042650 ENSMUST00000044250 Alkbh5 protein_coding Interval_19453 chr10 99457720 99458026 + 0 NA intron (ENSMUSG00000112082.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000112082.1, intron 1 of 1) -1816 ENSMUSG00000112265.1 ENSMUSG00000112265 ENSMUST00000219484 Gm34983 lincRNA Interval_105599 chr3 88002278 88002949 + 0 NA Intergenic Intergenic -8158 ENSMUSG00000004892.13 ENSMUSG00000004892 ENSMUST00000194193 Bcan protein_coding Interval_42630 chr13 17232404 17232596 + 0 NA intron (ENSMUSG00000055137.7, intron 12 of 13) protein_coding-intron (ENSMUSG00000055137.7, intron 12 of 13) -26271 ENSMUSG00000113024.1 ENSMUSG00000113024 ENSMUST00000222753 Gm48502 TEC Interval_157365 chr8 69889319 69889560 + 0 NA intron (ENSMUSG00000048967.16, intron 2 of 5) protein_coding-intron (ENSMUSG00000048967.16, intron 3 of 5) -1752 ENSMUSG00000044006.8 ENSMUSG00000044006 ENSMUST00000057831 Cilp2 protein_coding Interval_170412 chr9 107737908 107739328 + 0 NA Intergenic Intergenic 21945 ENSMUSG00000032580.12 ENSMUSG00000032580 ENSMUST00000181993 Rbm5 protein_coding Interval_172690 chrX 42431643 42432843 + 0 NA Intergenic Intergenic -57448 ENSMUSG00000105993.1 ENSMUSG00000105993 ENSMUST00000197237 Tex13c2 protein_coding Interval_102315 chr3 21823908 21824110 + 0 NA Intergenic Intergenic -61478 ENSMUSG00000103441.1 ENSMUSG00000103441 ENSMUST00000193217 7530428D23Rik transcribed_processed_pseudogene Interval_16071 chr10 60530977 60531778 + 0 NA intron (ENSMUSG00000012819.15, intron 6 of 65) protein_coding-intron (ENSMUSG00000012819.15, intron 6 of 66) 131473 ENSMUSG00000090439.3 ENSMUSG00000090439 ENSMUST00000218360 Gm17455 protein_coding Interval_135087 chr6 35271629 35271823 + 0 NA exon (ENSMUSG00000029843.4, exon 14 of 16) protein_coding-exon (ENSMUSG00000029843.4, exon 14 of 16) 16448 ENSMUSG00000029843.4 ENSMUSG00000029843 ENSMUST00000122829 Slc13a4 protein_coding Interval_75761 chr17 71104600 71105088 + 0 NA intron (ENSMUSG00000024049.15, intron 24 of 36) protein_coding-intron (ENSMUSG00000024049.15, intron 24 of 36) -39694 ENSMUSG00000117315.1 ENSMUSG00000117315 ENSMUST00000233463 1600022D10Rik lincRNA Interval_132468 chr5 145139473 145140791 + 0 NA promoter-TSS (ENSMUSG00000029623.14) protein_coding-promoter-TSS (ENSMUSG00000029623.14) -230 ENSMUSG00000038722.17 ENSMUSG00000038722 ENSMUST00000160840 Bud31 protein_coding Interval_90788 chr2 32612165 32612851 + 0 NA TTS (ENSMUSG00000026811.18) protein_coding-TTS (ENSMUSG00000026811.18) 5468 ENSMUSG00000026811.18 ENSMUSG00000026811 ENSMUST00000128811 St6galnac6 protein_coding Interval_148803 chr7 88097673 88098112 + 0 NA intron (ENSMUSG00000049583.15, intron 9 of 9) protein_coding-intron (ENSMUSG00000049583.15, intron 7 of 7) -10641 ENSMUSG00000087947.1 ENSMUSG00000087947 ENSMUST00000157322 Gm24249 snRNA Interval_130990 chr5 134436045 134437469 + 0 NA intron (ENSMUSG00000023079.14, intron 1 of 3) protein_coding-intron (ENSMUSG00000023079.14, intron 1 of 30) -11817 ENSMUSG00000076320.1 ENSMUSG00000076320 ENSMUST00000102365 Gm26340 miRNA Interval_8295 chr1 136984415 136984894 + 0 NA Intergenic Intergenic 5616 ENSMUSG00000088970.1 ENSMUSG00000088970 ENSMUST00000158345 Gm23763 snRNA Interval_139822 chr6 109241242 109241492 + 0 NA Intergenic Intergenic 27125 ENSMUSG00000107641.1 ENSMUSG00000107641 ENSMUST00000205246 Gm32858 processed_pseudogene Interval_142675 chr6 144961561 144962178 + 0 NA Intergenic Intergenic 76319 ENSMUSG00000088867.1 ENSMUSG00000088867 ENSMUST00000158242 Gm23071 rRNA Interval_172933 chrX 56609435 56610509 + 0 NA exon (ENSMUSG00000060681.15, exon 1 of 16) protein_coding-exon (ENSMUSG00000060681.15, exon 1 of 16) -11903 ENSMUSG00000061273.3 ENSMUSG00000061273 ENSMUST00000059899 Mmgt1 protein_coding Interval_1350 chr1 20896046 20897363 + 0 NA intron (ENSMUSG00000025931.15, intron 1 of 2) protein_coding-intron (ENSMUSG00000025931.15, intron 1 of 2) 6098 ENSMUSG00000025931.15 ENSMUSG00000025931 ENSMUST00000187651 Paqr8 protein_coding Interval_173988 chrX 122875701 122876047 + 0 NA Intergenic Intergenic 107005 ENSMUSG00000083490.1 ENSMUSG00000083490 ENSMUST00000119309 Gm14940 processed_pseudogene Interval_88793 chr2 11059412 11060347 + 0 NA exon (ENSMUSG00000085257.2, exon 4 of 4) lincRNA-exon (ENSMUSG00000085257.2, exon 4 of 4) 23006 ENSMUSG00000085257.2 ENSMUSG00000085257 ENSMUST00000138416 Gm13264 lincRNA Interval_15171 chr10 43051563 43052698 + 0 NA intron (ENSMUSG00000038248.8, intron 5 of 6) protein_coding-intron (ENSMUSG00000038248.8, intron 5 of 6) 17137 ENSMUSG00000111171.1 ENSMUSG00000111171 ENSMUST00000213469 Gm47815 antisense Interval_37428 chr12 68440763 68442127 + 0 NA intron (ENSMUSG00000113867.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000113867.1, intron 1 of 2) -1163 ENSMUSG00000113161.1 ENSMUSG00000113161 ENSMUST00000220950 Gm47457 TEC Interval_60376 chr15 73269287 73270072 + 0 NA intron (ENSMUSG00000022607.18, intron 19 of 34) protein_coding-intron (ENSMUSG00000022607.18, intron 16 of 31) -14797 ENSMUSG00000065612.1 ENSMUSG00000065612 ENSMUST00000083678 Mir151 miRNA Interval_11219 chr1 180263533 180264138 + 0 NA promoter-TSS (ENSMUSG00000010609.15) protein_coding-promoter-TSS (ENSMUSG00000010609.15) 7406 ENSMUSG00000102923.1 ENSMUSG00000102923 ENSMUST00000192164 Gm31728 antisense Interval_50459 chr14 13639706 13640620 + 0 NA Intergenic Intergenic -30713 ENSMUSG00000044772.2 ENSMUSG00000044772 ENSMUST00000061045 Sntn protein_coding Interval_114177 chr4 65830022 65831769 + 0 NA intron (ENSMUSG00000028373.16, intron 9 of 21) protein_coding-intron (ENSMUSG00000028373.16, intron 10 of 22) 225646 ENSMUSG00000051675.13 ENSMUSG00000051675 ENSMUST00000156922 Trim32 protein_coding Interval_171211 chr9 115239945 115241689 + 0 NA Intergenic Intergenic 40419 ENSMUSG00000097967.1 ENSMUSG00000097967 ENSMUST00000182789 Gm27002 sense_intronic Interval_125133 chr5 64787652 64788864 + 0 NA intron (ENSMUSG00000097640.7, intron 1 of 4) processed_transcript-intron (ENSMUSG00000097640.7, intron 1 of 4) -15364 ENSMUSG00000029178.14 ENSMUSG00000029178 ENSMUST00000198946 Klf3 protein_coding Interval_103242 chr3 37341020 37341547 + 0 NA exon (ENSMUSG00000105063.1, exon 1 of 1) TEC-exon (ENSMUSG00000105063.1, exon 1 of 1) 2266 ENSMUSG00000105063.1 ENSMUSG00000105063 ENSMUST00000198874 Gm43488 TEC Interval_17802 chr10 80172494 80173453 + 0 NA promoter-TSS (ENSMUSG00000035595.6) protein_coding-promoter-TSS (ENSMUSG00000035595.6) 29 ENSMUSG00000035595.6 ENSMUSG00000035595 ENSMUST00000041882 Fam174c protein_coding Interval_146574 chr7 46951915 46952381 + 0 NA intron (ENSMUSG00000043262.16, intron 3 of 4) protein_coding-intron (ENSMUSG00000043262.16, intron 3 of 11) 6314 ENSMUSG00000043262.16 ENSMUSG00000043262 ENSMUST00000208308 Uevld protein_coding Interval_125231 chr5 65548113 65548737 + 0 NA intron (ENSMUSG00000029203.16, intron 1 of 4) protein_coding-intron (ENSMUSG00000029203.16, intron 1 of 6) 6496 ENSMUSG00000107362.1 ENSMUSG00000107362 ENSMUST00000202699 Gm40309 TEC Interval_148161 chr7 79555036 79555974 + 0 NA exon (ENSMUSG00000108616.1, exon 2 of 2) lincRNA-exon (ENSMUSG00000108616.1, exon 2 of 2) 19462 ENSMUSG00000108616.1 ENSMUSG00000108616 ENSMUST00000206829 Gm35040 lincRNA Interval_4026 chr1 66699649 66701419 + 0 NA promoter-TSS (ENSMUSG00000026005.15) protein_coding-promoter-TSS (ENSMUSG00000026005.15) -373 ENSMUSG00000026005.15 ENSMUSG00000026005 ENSMUST00000190404 Rpe protein_coding Interval_93325 chr2 71955639 71956663 + 0 NA promoter-TSS (ENSMUSG00000087345.1) lincRNA-promoter-TSS (ENSMUSG00000087345.1) 98 ENSMUSG00000087345.1 ENSMUSG00000087345 ENSMUST00000133981 Gm13746 lincRNA Interval_45512 chr13 55569737 55571563 + 0 NA promoter-TSS (ENSMUSG00000021495.10) protein_coding-promoter-TSS (ENSMUSG00000021495.10) -22526 ENSMUSG00000058569.8 ENSMUSG00000058569 ENSMUST00000225888 Tmed9 protein_coding Interval_58884 chr15 39720371 39720680 + 0 NA Intergenic Intergenic -25409 ENSMUSG00000022303.9 ENSMUSG00000022303 ENSMUST00000227792 Dcstamp protein_coding Interval_146575 chr7 46957744 46959041 + 0 NA promoter-TSS (ENSMUSG00000043262.16) protein_coding-promoter-TSS (ENSMUSG00000043262.16) 70 ENSMUSG00000043262.16 ENSMUSG00000043262 ENSMUST00000208308 Uevld protein_coding Interval_65546 chr16 23230597 23230810 + 0 NA intron (ENSMUSG00000022885.16, intron 1 of 7) protein_coding-intron (ENSMUSG00000022885.16, intron 1 of 7) 4682 ENSMUSG00000022885.16 ENSMUSG00000022885 ENSMUST00000115335 St6gal1 protein_coding Interval_82500 chr18 74675245 74675873 + 0 NA intron (ENSMUSG00000025885.18, intron 14 of 39) protein_coding-intron (ENSMUSG00000025885.18, intron 14 of 38) -38060 ENSMUSG00000025885.18 ENSMUSG00000025885 ENSMUST00000154986 Myo5b protein_coding Interval_124884 chr5 58939423 58939737 + 0 NA Intergenic Intergenic 61413 ENSMUSG00000106509.1 ENSMUSG00000106509 ENSMUST00000198671 Gm43394 processed_pseudogene Interval_59136 chr15 44631288 44632671 + 0 NA intron (ENSMUSG00000022339.9, intron 5 of 6) protein_coding-intron (ENSMUSG00000022339.9, intron 5 of 6) 12550 ENSMUSG00000022339.9 ENSMUSG00000022339 ENSMUST00000022964 Ebag9 protein_coding Interval_133052 chr5 149529781 149530395 + 0 NA intron (ENSMUSG00000029658.17, intron 1 of 22) protein_coding-intron (ENSMUSG00000029658.17, intron 1 of 22) 355 ENSMUSG00000029658.17 ENSMUSG00000029658 ENSMUST00000202635 Wdr95 protein_coding Interval_148543 chr7 82287421 82287596 + 0 NA intron (ENSMUSG00000030638.13, intron 8 of 8) protein_coding-intron (ENSMUSG00000030638.13, intron 8 of 8) -54760 ENSMUSG00000109479.1 ENSMUSG00000109479 ENSMUST00000208587 Gm44919 TEC Interval_106811 chr3 101033586 101034114 + 0 NA Intergenic Intergenic -11674 ENSMUSG00000086564.9 ENSMUSG00000086564 ENSMUST00000167086 Cd101 protein_coding Interval_6406 chr1 107246637 107246824 + 0 NA intron (ENSMUSG00000073602.10, intron 1 of 7) protein_coding-intron (ENSMUSG00000073602.10, intron 1 of 7) 7560 ENSMUSG00000081114.1 ENSMUSG00000081114 ENSMUST00000120323 Gm15390 processed_pseudogene Interval_92699 chr2 62997847 62998033 + 0 NA intron (ENSMUSG00000059742.10, intron 2 of 6) protein_coding-intron (ENSMUSG00000059742.10, intron 2 of 15) 186322 ENSMUSG00000059742.10 ENSMUSG00000059742 ENSMUST00000131799 Kcnh7 protein_coding Interval_19752 chr10 108481460 108483347 + 0 NA promoter-TSS (ENSMUSG00000112065.1) processed_pseudogene-promoter-TSS (ENSMUSG00000112065.1) -247 ENSMUSG00000112065.1 ENSMUSG00000112065 ENSMUST00000217917 Gm47466 processed_pseudogene Interval_49485 chr13 112375685 112376412 + 0 NA intron (ENSMUSG00000049985.15, intron 10 of 11) protein_coding-intron (ENSMUSG00000049985.15, intron 9 of 10) -8203 ENSMUSG00000114536.1 ENSMUSG00000114536 ENSMUST00000224393 Gm48837 antisense Interval_95416 chr2 108877126 108877786 + 0 NA Intergenic Intergenic -2198 ENSMUSG00000083424.3 ENSMUSG00000083424 ENSMUST00000121779 Rpl35a-ps4 processed_pseudogene Interval_98980 chr2 156449404 156449697 + 0 NA intron (ENSMUSG00000027624.20, intron 2 of 6) protein_coding-intron (ENSMUSG00000027624.20, intron 1 of 21) -1942 ENSMUSG00000086872.1 ENSMUSG00000086872 ENSMUST00000142310 Gm14225 antisense Interval_106003 chr3 90550500 90551017 + 0 NA Intergenic Intergenic 2139 ENSMUSG00000084456.1 ENSMUSG00000084456 ENSMUST00000122507 Gm24593 snRNA Interval_49058 chr13 107600029 107601408 + 0 NA Intergenic Intergenic 12131 ENSMUSG00000114807.1 ENSMUSG00000114807 ENSMUST00000224826 Gm32090 lincRNA Interval_134045 chr6 17998347 17998800 + 0 NA intron (ENSMUSG00000010797.6, intron 4 of 4) protein_coding-intron (ENSMUSG00000010797.6, intron 4 of 4) 32012 ENSMUSG00000010797.6 ENSMUSG00000010797 ENSMUST00000010941 Wnt2 protein_coding Interval_13516 chr10 18917112 18917596 + 0 NA Intergenic Intergenic -30325 ENSMUSG00000111318.1 ENSMUSG00000111318 ENSMUST00000214387 Gm48483 lincRNA Interval_34661 chr12 8457041 8457266 + 0 NA Intergenic Intergenic -2235 ENSMUSG00000112664.1 ENSMUSG00000112664 ENSMUST00000219269 Gm48076 TEC Interval_11432 chr1 181911849 181912076 + 0 NA exon (ENSMUSG00000022995.16, exon 1 of 1) protein_coding-intron (ENSMUSG00000022995.16, intron 12 of 15) 41413 ENSMUSG00000103722.1 ENSMUSG00000103722 ENSMUST00000194331 2700078F05Rik TEC Interval_93659 chr2 75652273 75652453 + 0 NA Intergenic Intergenic -6881 ENSMUSG00000093242.1 ENSMUSG00000093242 ENSMUST00000175501 Gm24574 miRNA Interval_36844 chr12 54611740 54611973 + 0 NA Intergenic Intergenic -10734 ENSMUSG00000112145.1 ENSMUSG00000112145 ENSMUST00000219812 Gm6218 processed_pseudogene Interval_81991 chr18 66968978 66969303 + 0 NA Intergenic Intergenic -5025 ENSMUSG00000117798.1 ENSMUSG00000117798 ENSMUST00000237275 Gm50164 lincRNA Interval_101153 chr2 178581112 178582282 + 0 NA Intergenic Intergenic 121067 ENSMUSG00000039155.15 ENSMUSG00000039155 ENSMUST00000176869 Cdh26 protein_coding Interval_145340 chr7 34109688 34110728 + 0 NA TTS (ENSMUSG00000036459.15) protein_coding-TTS (ENSMUSG00000036459.15) 14777 ENSMUSG00000078752.3 ENSMUSG00000078752 ENSMUST00000108083 Scgb1b30 protein_coding Interval_20212 chr10 115997819 115998266 + 0 NA Intergenic Intergenic 115660 ENSMUSG00000074734.3 ENSMUSG00000074734 ENSMUST00000219858 Taf7l2 protein_coding Interval_6112 chr1 97304259 97304582 + 0 NA intron (ENSMUSG00000100484.1, intron 12 of 12) unprocessed_pseudogene-intron (ENSMUSG00000100484.1, intron 12 of 12) -42055 ENSMUSG00000101348.6 ENSMUSG00000101348 ENSMUST00000187538 Gm7135 transcribed_unprocessed_pseudogene Interval_49443 chr13 112030884 112031721 + 0 NA Intergenic Intergenic 25800 ENSMUSG00000086092.1 ENSMUSG00000086092 ENSMUST00000156109 Gm15323 lincRNA Interval_43537 chr13 32896552 32896806 + 0 NA intron (ENSMUSG00000079049.9, intron 1 of 4) protein_coding-intron (ENSMUSG00000079049.9, intron 2 of 6) 1478 ENSMUSG00000079049.9 ENSMUSG00000079049 ENSMUST00000221019 Serpinb1c protein_coding Interval_41118 chr12 111294250 111294501 + 0 NA TTS (ENSMUSG00000097381.2) antisense-TTS (ENSMUSG00000097381.2) 9613 ENSMUSG00000097381.2 ENSMUSG00000097381 ENSMUST00000181055 A230087F16Rik antisense Interval_113838 chr4 59245016 59245233 + 0 NA Intergenic Intergenic -14927 ENSMUSG00000086952.1 ENSMUSG00000086952 ENSMUST00000124589 Gm12596 lincRNA Interval_8064 chr1 135523272 135524527 + 0 NA exon (ENSMUSG00000104524.1, exon 1 of 1) TEC-exon (ENSMUSG00000104524.1, exon 1 of 1) 1439 ENSMUSG00000104524.1 ENSMUSG00000104524 ENSMUST00000192904 Gm37333 TEC Interval_150898 chr7 116237137 116238244 + 0 NA promoter-TSS (ENSMUSG00000045659.18) protein_coding-promoter-TSS (ENSMUSG00000045659.18) 45053 ENSMUSG00000108650.1 ENSMUSG00000108650 ENSMUST00000205675 Gm44867 sense_intronic Interval_170232 chr9 106345214 106345835 + 0 NA intron (ENSMUSG00000023345.17, intron 10 of 10) protein_coding-intron (ENSMUSG00000023345.17, intron 10 of 10) -9691 ENSMUSG00000099879.1 ENSMUSG00000099879 ENSMUST00000185808 Gm29123 antisense Interval_125956 chr5 76206719 76206990 + 0 NA TTS (ENSMUSG00000029234.13) protein_coding-TTS (ENSMUSG00000029234.13) 2734 ENSMUSG00000029234.13 ENSMUSG00000029234 ENSMUST00000153633 Tmem165 protein_coding Interval_92639 chr2 61793064 61794881 + 0 NA intron (ENSMUSG00000026914.15, intron 4 of 5) protein_coding-intron (ENSMUSG00000026914.15, intron 10 of 11) -4208 ENSMUSG00000087794.1 ENSMUSG00000087794 ENSMUST00000157169 Gm25966 rRNA Interval_82659 chr18 75715751 75716617 + 0 NA Intergenic Intergenic -50959 ENSMUSG00000118164.1 ENSMUSG00000118164 ENSMUST00000237826 Gm20570 processed_pseudogene Interval_65165 chr16 20301592 20302822 + 0 NA promoter-TSS (ENSMUSG00000033918.16) protein_coding-promoter-TSS (ENSMUSG00000033918.16) 172 ENSMUSG00000033918.16 ENSMUSG00000033918 ENSMUST00000153275 Parl protein_coding Interval_1463 chr1 23772747 23773171 + 0 NA intron (ENSMUSG00000026156.8, intron 2 of 2) protein_coding-intron (ENSMUSG00000026156.8, intron 1 of 3) 11206 ENSMUSG00000026156.8 ENSMUSG00000026156 ENSMUST00000140583 B3gat2 protein_coding Interval_150198 chr7 107908314 107908547 + 0 NA TTS (ENSMUSG00000073893.6) protein_coding-TTS (ENSMUSG00000073893.6) 10528 ENSMUSG00000073893.6 ENSMUSG00000073893 ENSMUST00000210420 Olfr472 protein_coding Interval_101354 chr2 180726787 180728510 + 0 NA intron (ENSMUSG00000023393.15, intron 1 of 4) protein_coding-intron (ENSMUSG00000023393.15, intron 1 of 12) -8770 ENSMUSG00000023393.15 ENSMUSG00000023393 ENSMUST00000140955 Slc17a9 protein_coding Interval_116486 chr4 114578295 114579188 + 0 NA intron (ENSMUSG00000070867.4, intron 2 of 6) protein_coding-intron (ENSMUSG00000070867.4, intron 2 of 6) 94599 ENSMUSG00000100998.1 ENSMUSG00000100998 ENSMUST00000189251 Gm28864 lincRNA Interval_154562 chr8 19527833 19528198 + 0 NA Intergenic Intergenic 7393 ENSMUSG00000098476.1 ENSMUSG00000098476 ENSMUST00000184614 Gm27852 miRNA Interval_50855 chr14 20220736 20221521 + 0 NA exon (ENSMUSG00000114439.1, exon 2 of 2) lincRNA-exon (ENSMUSG00000114439.1, exon 2 of 2) 5626 ENSMUSG00000114439.1 ENSMUSG00000114439 ENSMUST00000223732 Gm48395 lincRNA Interval_58940 chr15 40242506 40242928 + 0 NA Intergenic Intergenic -56618 ENSMUSG00000092855.1 ENSMUSG00000092855 ENSMUST00000175114 Gm25958 miRNA Interval_139516 chr6 100675243 100675483 + 0 NA Intergenic Intergenic -4206 ENSMUSG00000035378.17 ENSMUSG00000035378 ENSMUST00000162776 Shq1 protein_coding Interval_105060 chr3 80742128 80743455 + 0 NA intron (ENSMUSG00000033981.14, intron 2 of 9) protein_coding-intron (ENSMUSG00000033981.14, intron 2 of 15) -50478 ENSMUSG00000093226.1 ENSMUSG00000093226 ENSMUST00000175485 Gm25749 miRNA Interval_152399 chr7 132759376 132759966 + 0 NA TTS (ENSMUSG00000030956.15) protein_coding-TTS (ENSMUSG00000030956.15) 43079 ENSMUSG00000030956.15 ENSMUSG00000030956 ENSMUST00000148303 Fam53b protein_coding Interval_172237 chrX 11633766 11634239 + 0 NA Intergenic Intergenic 32648 ENSMUSG00000083492.1 ENSMUSG00000083492 ENSMUST00000121327 Gm14515 processed_pseudogene Interval_34467 chr12 4459602 4461198 + 0 NA intron (ENSMUSG00000020647.10, intron 1 of 22) protein_coding-intron (ENSMUSG00000020647.10, intron 1 of 22) -48917 ENSMUSG00000111938.1 ENSMUSG00000111938 ENSMUST00000218374 2900045O20Rik lincRNA Interval_40506 chr12 105335981 105337638 + 0 NA promoter-TSS (ENSMUSG00000097929.9) protein_coding-promoter-TSS (ENSMUSG00000097929.9) 2939 ENSMUSG00000097929.9 ENSMUSG00000097929 ENSMUST00000180503 Tunar protein_coding Interval_162632 chr9 6988594 6989703 + 0 NA intron (ENSMUSG00000047193.16, intron 83 of 89) protein_coding-intron (ENSMUSG00000047193.16, intron 82 of 88) 128440 ENSMUSG00000047193.16 ENSMUSG00000047193 ENSMUST00000139115 Dync2h1 protein_coding Interval_2850 chr1 46428291 46428599 + 0 NA intron (ENSMUSG00000101337.6, intron 1 of 64) protein_coding-intron (ENSMUSG00000101337.6, intron 1 of 64) 13943 ENSMUSG00000101262.1 ENSMUSG00000101262 ENSMUST00000188705 Gm8326 processed_pseudogene Interval_123775 chr5 35418405 35418828 + 0 NA Intergenic Intergenic 22518 ENSMUSG00000106970.1 ENSMUSG00000106970 ENSMUST00000201640 Gm43377 TEC Interval_161691 chr8 122079277 122079519 + 0 NA intron (ENSMUSG00000092329.1, intron 1 of 15) protein_coding-intron (ENSMUSG00000092329.1, intron 1 of 15) 101374 ENSMUSG00000099140.1 ENSMUSG00000099140 ENSMUST00000184699 Mir7237 miRNA Interval_42446 chr13 13634659 13635673 + 0 NA exon (ENSMUSG00000019726.12, exon 5 of 53) protein_coding-exon (ENSMUSG00000019726.12, exon 5 of 53) -48925 ENSMUSG00000019726.12 ENSMUSG00000019726 ENSMUST00000221587 Lyst protein_coding Interval_77878 chr18 4987106 4989150 + 0 NA intron (ENSMUSG00000024236.18, intron 3 of 35) protein_coding-intron (ENSMUSG00000024236.18, intron 1 of 37) -47038 ENSMUSG00000024236.18 ENSMUSG00000024236 ENSMUST00000129543 Svil protein_coding Interval_162875 chr9 11065393 11065724 + 0 NA Intergenic Intergenic -36955 ENSMUSG00000110951.1 ENSMUSG00000110951 ENSMUST00000216068 Gm47001 lincRNA Interval_125548 chr5 70070981 70071224 + 0 NA Intergenic Intergenic 115744 ENSMUSG00000088863.1 ENSMUSG00000088863 ENSMUST00000158238 Gm23067 snRNA Interval_104238 chr3 61479089 61479505 + 0 NA Intergenic Intergenic -16436 ENSMUSG00000098208.1 ENSMUSG00000098208 ENSMUST00000182720 Gm8349 processed_pseudogene Interval_158204 chr8 79755988 79756181 + 0 NA intron (ENSMUSG00000036977.8, intron 4 of 4) protein_coding-intron (ENSMUSG00000036977.8, intron 4 of 4) -3671 ENSMUSG00000110202.1 ENSMUSG00000110202 ENSMUST00000211147 Gm45435 antisense Interval_100114 chr2 167155585 167156833 + 0 NA intron (ENSMUSG00000050556.9, intron 1 of 1) protein_coding-intron (ENSMUSG00000050556.9, intron 2 of 2) -32493 ENSMUSG00000085151.7 ENSMUSG00000085151 ENSMUST00000147446 1110018N20Rik processed_transcript Interval_85172 chr19 23325201 23326087 + 0 NA intron (ENSMUSG00000033207.7, intron 10 of 12) protein_coding-intron (ENSMUSG00000033207.7, intron 11 of 13) 29315 ENSMUSG00000096249.1 ENSMUSG00000096249 ENSMUST00000104059 Gm24263 snRNA Interval_44765 chr13 48412471 48412834 + 0 NA Intergenic Intergenic -4140 ENSMUSG00000114695.1 ENSMUSG00000114695 ENSMUST00000225569 Gm48648 lincRNA Interval_119274 chr4 136587004 136587564 + 0 NA intron (ENSMUSG00000036940.15, intron 2 of 19) protein_coding-intron (ENSMUSG00000036940.15, intron 2 of 16) -2624 ENSMUSG00000082711.1 ENSMUSG00000082711 ENSMUST00000118562 Gm12987 processed_pseudogene Interval_79529 chr18 32938565 32939962 + 0 NA promoter-TSS (ENSMUSG00000097710.2) antisense-promoter-TSS (ENSMUSG00000097710.2) -34 ENSMUSG00000097710.2 ENSMUSG00000097710 ENSMUST00000180941 2310026I22Rik antisense Interval_116167 chr4 108335562 108335880 + 0 NA intron (ENSMUSG00000048351.14, intron 3 of 3) protein_coding-intron (ENSMUSG00000048351.14, intron 2 of 2) 7532 ENSMUSG00000048351.14 ENSMUSG00000048351 ENSMUST00000147054 Coa7 protein_coding Interval_41235 chr12 112033589 112033918 + 0 NA intron (ENSMUSG00000054003.13, intron 18 of 31) protein_coding-intron (ENSMUSG00000054003.13, intron 22 of 35) 20687 ENSMUSG00000054003.13 ENSMUSG00000054003 ENSMUST00000193630 Tdrd9 protein_coding Interval_74186 chr17 46953685 46954486 + 0 NA intron (ENSMUSG00000023977.15, intron 29 of 44) protein_coding-intron (ENSMUSG00000023977.15, intron 31 of 46) -1930 ENSMUSG00000023977.15 ENSMUSG00000023977 ENSMUST00000225599 Ubr2 protein_coding Interval_170471 chr9 108195930 108196372 + 0 NA Intergenic Intergenic -4803 ENSMUSG00000102538.1 ENSMUSG00000102538 ENSMUST00000194491 Gm37230 TEC Interval_42231 chr13 10504647 10504830 + 0 NA intron (ENSMUSG00000097009.2, intron 5 of 7) antisense-intron (ENSMUSG00000097009.2, intron 5 of 7) -12949 ENSMUSG00000113758.1 ENSMUSG00000113758 ENSMUST00000221705 Gm47407 lincRNA Interval_131755 chr5 139680081 139680817 + 0 NA Intergenic Intergenic -21198 ENSMUSG00000104637.1 ENSMUSG00000104637 ENSMUST00000198319 Gm42424 processed_pseudogene Interval_100456 chr2 169100398 169102203 + 0 NA Intergenic Intergenic -5153 ENSMUSG00000086238.1 ENSMUSG00000086238 ENSMUST00000144607 Gm14258 lincRNA Interval_46577 chr13 67324304 67324488 + 0 NA intron (ENSMUSG00000098781.1, intron 2 of 3) protein_coding-intron (ENSMUSG00000098781.1, intron 3 of 5) 8104 ENSMUSG00000057842.14 ENSMUSG00000057842 ENSMUST00000171466 Zfp595 protein_coding Interval_149391 chr7 98078653 98079963 + 0 NA exon (ENSMUSG00000030761.16, exon 20 of 48) protein_coding-exon (ENSMUSG00000030761.16, exon 20 of 48) 11820 ENSMUSG00000030761.16 ENSMUSG00000030761 ENSMUST00000131632 Myo7a protein_coding Interval_151606 chr7 125178616 125178930 + 0 NA Intergenic Intergenic 41113 ENSMUSG00000073844.5 ENSMUSG00000073844 ENSMUST00000073056 Gm21957 processed_pseudogene Interval_36279 chr12 40587268 40587563 + 0 NA intron (ENSMUSG00000035954.10, intron 1 of 5) protein_coding-intron (ENSMUSG00000035954.10, intron 1 of 52) 141332 ENSMUSG00000035954.10 ENSMUSG00000035954 ENSMUST00000220850 Dock4 protein_coding Interval_119030 chr4 135085285 135085636 + 0 NA Intergenic Intergenic 34987 ENSMUSG00000086884.1 ENSMUSG00000086884 ENSMUST00000146152 Gm16225 lincRNA Interval_28767 chr11 78188341 78190253 + 0 NA promoter-TSS (ENSMUSG00000002059.18) protein_coding-promoter-TSS (ENSMUSG00000002059.18) 375 ENSMUSG00000002059.18 ENSMUSG00000002059 ENSMUST00000154542 Rab34 protein_coding Interval_78274 chr18 11138723 11138928 + 0 NA Intergenic Intergenic 85781 ENSMUSG00000005836.10 ENSMUSG00000005836 ENSMUST00000234971 Gata6 protein_coding Interval_67830 chr16 57542966 57543853 + 0 NA intron (ENSMUSG00000043336.14, intron 4 of 4) protein_coding-intron (ENSMUSG00000022748.8, intron 1 of 9) 63455 ENSMUSG00000022748.8 ENSMUSG00000022748 ENSMUST00000232413 Cmss1 protein_coding Interval_162323 chr8 127092459 127093277 + 0 NA intron (ENSMUSG00000025812.18, intron 1 of 17) protein_coding-intron (ENSMUSG00000025812.18, intron 1 of 23) 45956 ENSMUSG00000088710.1 ENSMUSG00000088710 ENSMUST00000158085 Gm22730 snRNA Interval_64266 chr16 10041435 10041621 + 0 NA Intergenic Intergenic -3437 ENSMUSG00000098100.1 ENSMUSG00000098100 ENSMUST00000182616 Gm7572 processed_pseudogene Interval_130157 chr5 124598227 124599190 + 0 NA promoter-TSS (ENSMUSG00000029386.15) protein_coding-promoter-TSS (ENSMUSG00000029386.15) -41 ENSMUSG00000029386.15 ENSMUSG00000029386 ENSMUST00000130912 Tctn2 protein_coding Interval_83209 chr18 82780199 82780472 + 0 NA Intergenic Intergenic -21294 ENSMUSG00000101773.1 ENSMUSG00000101773 ENSMUST00000188435 2210420H20Rik lincRNA Interval_46458 chr13 66319742 66321929 + 0 NA intron (ENSMUSG00000114616.1, intron 2 of 2) lincRNA-intron (ENSMUSG00000114616.1, intron 2 of 2) -11539 ENSMUSG00000114776.1 ENSMUSG00000114776 ENSMUST00000224087 Gm18260 processed_pseudogene Interval_104701 chr3 69536082 69536869 + 0 NA intron (ENSMUSG00000027784.10, intron 2 of 3) protein_coding-intron (ENSMUSG00000027784.10, intron 2 of 3) 30989 ENSMUSG00000098006.1 ENSMUSG00000098006 ENSMUST00000183259 Gm8565 processed_pseudogene Interval_41426 chr12 113735641 113736399 + 0 NA TTS (ENSMUSG00000095210.2) IG_V_gene-TTS (ENSMUSG00000095210.2) 610 ENSMUSG00000095210.2 ENSMUSG00000095210 ENSMUST00000192264 Ighv5-9-1 IG_V_gene Interval_140974 chr6 123373968 123374332 + 0 NA exon (ENSMUSG00000094145.2, exon 6 of 6) protein_coding-exon (ENSMUSG00000094145.2, exon 6 of 6) 43966 ENSMUSG00000094145.2 ENSMUSG00000094145 ENSMUST00000232807 Vmn2r20 protein_coding Interval_148194 chr7 79742649 79743574 + 0 NA promoter-TSS (ENSMUSG00000030545.9) protein_coding-promoter-TSS (ENSMUSG00000030545.9) -52 ENSMUSG00000039099.7 ENSMUSG00000039099 ENSMUST00000035622 Wdr93 protein_coding Interval_90024 chr2 27386878 27387446 + 0 NA intron (ENSMUSG00000009621.18, intron 1 of 27) protein_coding-intron (ENSMUSG00000009621.18, intron 1 of 27) -14690 ENSMUSG00000076364.1 ENSMUSG00000076364 ENSMUST00000102409 Gm24049 miRNA Interval_169899 chr9 102803601 102804197 + 0 NA Intergenic Intergenic 17051 ENSMUSG00000111395.1 ENSMUSG00000111395 ENSMUST00000214802 Gm18655 processed_pseudogene Interval_81605 chr18 62022807 62023385 + 0 NA intron (ENSMUSG00000045629.8, intron 16 of 16) protein_coding-intron (ENSMUSG00000045629.8, intron 16 of 16) 45137 ENSMUSG00000045629.8 ENSMUSG00000045629 ENSMUST00000236759 Sh3tc2 protein_coding Interval_121352 chr4 155187052 155187355 + 0 NA intron (ENSMUSG00000029050.15, intron 2 of 7) protein_coding-intron (ENSMUSG00000029050.15, intron 1 of 6) 1093 ENSMUSG00000029050.15 ENSMUSG00000029050 ENSMUST00000030917 Ski protein_coding Interval_92673 chr2 62388534 62388759 + 0 NA intron (ENSMUSG00000035000.8, intron 1 of 7) protein_coding-intron (ENSMUSG00000035000.8, intron 2 of 25) 31575 ENSMUSG00000087518.1 ENSMUSG00000087518 ENSMUST00000136879 Gm13561 antisense Interval_46906 chr13 73320307 73320618 + 0 NA intron (ENSMUSG00000021606.8, intron 2 of 2) protein_coding-intron (ENSMUSG00000021606.8, intron 2 of 3) 2618 ENSMUSG00000066407.3 ENSMUSG00000066407 ENSMUST00000085163 Gm10263 processed_pseudogene Interval_55020 chr14 77016591 77017700 + 0 NA Intergenic Intergenic 18936 ENSMUSG00000044350.14 ENSMUSG00000044350 ENSMUST00000142300 Lacc1 protein_coding Interval_43036 chr13 23400403 23402885 + 0 NA Intergenic Intergenic 19139 ENSMUSG00000083667.1 ENSMUSG00000083667 ENSMUST00000121969 Gm11334 processed_pseudogene Interval_56453 chr14 118878391 118879590 + 0 NA exon (ENSMUSG00000115718.1, exon 1 of 1) antisense-exon (ENSMUSG00000115718.1, exon 1 of 1) 3108 ENSMUSG00000115718.1 ENSMUSG00000115718 ENSMUST00000226752 Gm49179 antisense Interval_63636 chr15 102463504 102464080 + 0 NA TTS (ENSMUSG00000023048.13) protein_coding-TTS (ENSMUSG00000023048.13) 4560 ENSMUSG00000023048.13 ENSMUSG00000023048 ENSMUST00000164688 Prr13 protein_coding Interval_58907 chr15 39898557 39899001 + 0 NA intron (ENSMUSG00000022305.13, intron 1 of 5) protein_coding-intron (ENSMUSG00000022305.13, intron 2 of 6) 44911 ENSMUSG00000022305.13 ENSMUSG00000022305 ENSMUST00000146714 Lrp12 protein_coding Interval_67790 chr16 57211423 57211726 + 0 NA intron (ENSMUSG00000022749.8, intron 4 of 7) protein_coding-intron (ENSMUSG00000022749.8, intron 4 of 17) -10402 ENSMUSG00000022749.8 ENSMUSG00000022749 ENSMUST00000227359 Tbc1d23 protein_coding Interval_41652 chr12 117403398 117404488 + 0 NA Intergenic Intergenic -66931 ENSMUSG00000101930.1 ENSMUSG00000101930 ENSMUST00000186454 Gm5441 antisense Interval_71825 chr17 26356604 26356922 + 0 NA Intergenic Intergenic -34141 ENSMUSG00000117551.1 ENSMUSG00000117551 ENSMUST00000234840 Gm50015 lincRNA Interval_111699 chr4 26248009 26248976 + 0 NA Intergenic Intergenic 98399 ENSMUSG00000040520.7 ENSMUSG00000040520 ENSMUST00000153813 Manea protein_coding Interval_39512 chr12 89062824 89063156 + 0 NA intron (ENSMUSG00000066392.12, intron 2 of 19) protein_coding-intron (ENSMUSG00000066392.12, intron 2 of 19) 192371 ENSMUSG00000103136.1 ENSMUSG00000103136 ENSMUST00000194420 Gm37980 TEC Interval_132938 chr5 148847809 148848607 + 0 NA Intergenic Intergenic 27441 ENSMUSG00000087647.2 ENSMUSG00000087647 ENSMUST00000136919 Gm15407 lincRNA Interval_75843 chr17 71749010 71749327 + 0 NA exon (ENSMUSG00000044375.8, exon 1 of 2) protein_coding-exon (ENSMUSG00000044375.8, exon 1 of 2) 3726 ENSMUSG00000044375.8 ENSMUSG00000044375 ENSMUST00000057405 Pcare protein_coding Interval_59843 chr15 59679567 59681406 + 0 NA Intergenic Intergenic -8373 ENSMUSG00000115010.1 ENSMUSG00000115010 ENSMUST00000227801 Gm20150 processed_pseudogene Interval_12848 chr10 6416817 6418027 + 0 NA Intergenic Intergenic -5276 ENSMUSG00000112312.1 ENSMUSG00000112312 ENSMUST00000217959 Gm47755 processed_pseudogene Interval_132834 chr5 148214249 148215291 + 0 NA intron (ENSMUSG00000029651.16, intron 3 of 3) protein_coding-intron (ENSMUSG00000029651.16, intron 5 of 14) 8542 ENSMUSG00000107033.1 ENSMUSG00000107033 ENSMUST00000200900 Gm43553 TEC Interval_57436 chr15 10818121 10818877 + 0 NA intron (ENSMUSG00000115151.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000115151.1, intron 1 of 2) 3672 ENSMUSG00000115151.1 ENSMUSG00000115151 ENSMUST00000228418 Gm19276 lincRNA Interval_95808 chr2 116772456 116772725 + 0 NA Intergenic Intergenic 104578 ENSMUSG00000086462.1 ENSMUSG00000086462 ENSMUST00000151391 Gm13990 antisense Interval_170671 chr9 109995920 109996913 + 0 NA intron (ENSMUSG00000032479.15, intron 2 of 3) protein_coding-intron (ENSMUSG00000032479.15, intron 2 of 18) -4582 ENSMUSG00000105856.1 ENSMUSG00000105856 ENSMUST00000200260 Gm43732 antisense Interval_133213 chr5 150599676 150601440 + 0 NA exon (ENSMUSG00000107096.3, exon 3 of 3) lincRNA-exon (ENSMUSG00000107096.3, exon 3 of 3) -1018 ENSMUSG00000106927.1 ENSMUSG00000106927 ENSMUST00000202482 Gm43598 lincRNA Interval_107973 chr3 118194509 118196233 + 0 NA Intergenic Intergenic 226241 ENSMUSG00000104703.1 ENSMUSG00000104703 ENSMUST00000197578 4921521D15Rik lincRNA Interval_57438 chr15 10867848 10870043 + 0 NA Intergenic Intergenic -48492 ENSMUSG00000115042.1 ENSMUSG00000115042 ENSMUST00000228657 Gm29742 processed_pseudogene Interval_93797 chr2 76968432 76970256 + 0 NA intron (ENSMUSG00000051747.15, intron 7 of 11) protein_coding-intron (ENSMUSG00000051747.15, intron 7 of 190) 53352 ENSMUSG00000044033.16 ENSMUSG00000044033 ENSMUST00000111833 Ccdc141 protein_coding Interval_62786 chr15 96951936 96954103 + 0 NA Intergenic Intergenic -29614 ENSMUSG00000116202.1 ENSMUSG00000116202 ENSMUST00000229718 Rpl10a-ps3 processed_pseudogene Interval_124784 chr5 53995327 53995863 + 0 NA Intergenic Intergenic 77151 ENSMUSG00000107173.1 ENSMUSG00000107173 ENSMUST00000201049 Gm43266 TEC Interval_118188 chr4 129428139 129428696 + 0 NA TTS (ENSMUSG00000048485.12) protein_coding-TTS (ENSMUSG00000048485.12) 4112 ENSMUSG00000048485.12 ENSMUSG00000048485 ENSMUST00000124364 Zbtb8b protein_coding Interval_151186 chr7 119110170 119110890 + 0 NA Intergenic Intergenic 74073 ENSMUSG00000066197.5 ENSMUSG00000066197 ENSMUST00000084650 Gpr139 protein_coding Interval_366 chr1 4598477 4598764 + 0 NA Intergenic Intergenic -11851 ENSMUSG00000102735.1 ENSMUSG00000102735 ENSMUST00000192738 Gm7369 processed_pseudogene Interval_163646 chr9 23045096 23046182 + 0 NA Intergenic Intergenic -177647 ENSMUSG00000031963.8 ENSMUSG00000031963 ENSMUST00000214050 Bmper protein_coding Interval_43693 chr13 35104812 35105046 + 0 NA Intergenic Intergenic 26440 ENSMUSG00000113738.1 ENSMUSG00000113738 ENSMUST00000223077 Gm40910 lincRNA Interval_158572 chr8 84569881 84570752 + 0 NA intron (ENSMUSG00000034656.18, intron 24 of 48) protein_coding-intron (ENSMUSG00000034656.18, intron 22 of 46) 46868 ENSMUSG00000086067.1 ENSMUSG00000086067 ENSMUST00000127527 Gm16183 antisense Interval_81365 chr18 59266109 59266598 + 0 NA intron (ENSMUSG00000058152.8, intron 2 of 8) protein_coding-intron (ENSMUSG00000058152.8, intron 2 of 2) 90900 ENSMUSG00000058152.8 ENSMUSG00000058152 ENSMUST00000080721 Chsy3 protein_coding Interval_8290 chr1 136957638 136958934 + 0 NA intron (ENSMUSG00000026398.14, intron 1 of 8) protein_coding-intron (ENSMUSG00000026398.14, intron 1 of 8) -9113 ENSMUSG00000026398.14 ENSMUSG00000026398 ENSMUST00000195428 Nr5a2 protein_coding Interval_90891 chr2 33279876 33280143 + 0 NA intron (ENSMUSG00000038831.16, intron 5 of 17) protein_coding-intron (ENSMUSG00000038831.16, intron 4 of 16) -43162 ENSMUSG00000082844.1 ENSMUSG00000082844 ENSMUST00000120467 Gm13537 processed_pseudogene Interval_89309 chr2 19197258 19197462 + 0 NA Intergenic Intergenic -1942 ENSMUSG00000037683.14 ENSMUSG00000037683 ENSMUST00000049255 Armc3 protein_coding Interval_126993 chr5 99251750 99253397 + 0 NA intron (ENSMUSG00000089809.9, intron 4 of 16) protein_coding-intron (ENSMUSG00000089809.9, intron 1 of 13) -21522 ENSMUSG00000105686.1 ENSMUSG00000105686 ENSMUST00000196434 Gm35394 lincRNA Interval_4922 chr1 82641297 82641874 + 0 NA exon (ENSMUSG00000079465.8, exon 2 of 2) protein_coding-exon (ENSMUSG00000079465.8, exon 2 of 2) 6572 ENSMUSG00000065055.1 ENSMUSG00000065055 ENSMUST00000083121 n-R5s213 rRNA Interval_168955 chr9 89673832 89674491 + 0 NA Intergenic Intergenic -5690 ENSMUSG00000111569.1 ENSMUSG00000111569 ENSMUST00000215251 Gm47410 processed_pseudogene Interval_54417 chr14 69174242 69175445 + 0 NA exon (ENSMUSG00000044186.10, exon 2 of 2) protein_coding-exon (ENSMUSG00000044186.10, exon 2 of 2) -2986 ENSMUSG00000092499.1 ENSMUSG00000092499 ENSMUST00000172547 1700092C10Rik antisense Interval_33103 chr11 114455241 114456004 + 0 NA Intergenic Intergenic -6762 ENSMUSG00000062391.3 ENSMUSG00000062391 ENSMUST00000141088 4932435O22Rik lincRNA Interval_85784 chr19 31102672 31102931 + 0 NA intron (ENSMUSG00000052920.16, intron 3 of 17) protein_coding-intron (ENSMUSG00000052920.16, intron 3 of 17) -9745 ENSMUSG00000118011.1 ENSMUSG00000118011 ENSMUST00000235353 Gm50266 processed_pseudogene Interval_118195 chr4 129475360 129476332 + 0 NA intron (ENSMUSG00000040859.14, intron 9 of 10) protein_coding-intron (ENSMUSG00000040859.14, intron 9 of 10) 14162 ENSMUSG00000040859.14 ENSMUSG00000040859 ENSMUST00000145168 Bsdc1 protein_coding Interval_6347 chr1 106142331 106142776 + 0 NA Intergenic Intergenic 28971 ENSMUSG00000101583.1 ENSMUSG00000101583 ENSMUST00000190105 Gm20753 lincRNA Interval_131875 chr5 140528574 140528826 + 0 NA Intergenic Intergenic 17692 ENSMUSG00000105845.1 ENSMUSG00000105845 ENSMUST00000198212 Gm42808 lincRNA Interval_58570 chr15 36212552 36212772 + 0 NA intron (ENSMUSG00000037617.12, intron 2 of 8) protein_coding-intron (ENSMUSG00000037617.12, intron 12 of 18) -1957 ENSMUSG00000115811.1 ENSMUSG00000115811 ENSMUST00000227302 Gm41293 antisense Interval_108110 chr3 121552887 121553849 + 0 NA Intergenic Intergenic 21739 ENSMUSG00000097124.2 ENSMUSG00000097124 ENSMUST00000180804 A530020G20Rik antisense Interval_141134 chr6 125182137 125182444 + 0 NA intron (ENSMUSG00000038252.13, intron 9 of 31) protein_coding-intron (ENSMUSG00000038252.13, intron 9 of 31) 4351 ENSMUSG00000099587.1 ENSMUSG00000099587 ENSMUST00000187351 Gm28967 sense_intronic Interval_136230 chr6 52180325 52181258 + 0 NA TTS (ENSMUSG00000056468.3) TEC-TTS (ENSMUSG00000056468.3) -2319 ENSMUSG00000101451.1 ENSMUSG00000101451 ENSMUST00000191326 Gm29430 antisense Interval_119493 chr4 137913358 137914138 + 0 NA promoter-TSS (ENSMUSG00000057530.14) protein_coding-promoter-TSS (ENSMUSG00000057530.14) 277 ENSMUSG00000057530.14 ENSMUSG00000057530 ENSMUST00000129607 Ece1 protein_coding Interval_138986 chr6 94036248 94037485 + 0 NA intron (ENSMUSG00000045095.16, intron 1 of 24) protein_coding-intron (ENSMUSG00000045095.16, intron 1 of 21) -124362 ENSMUSG00000045095.16 ENSMUSG00000045095 ENSMUST00000203034 Magi1 protein_coding Interval_31760 chr11 102693976 102694255 + 0 NA intron (ENSMUSG00000020925.16, intron 1 of 4) protein_coding-intron (ENSMUSG00000020925.16, intron 1 of 4) 3619 ENSMUSG00000020925.16 ENSMUSG00000020925 ENSMUST00000138147 Ccdc43 protein_coding Interval_130320 chr5 125652293 125652559 + 0 NA intron (ENSMUSG00000070498.3, intron 2 of 2) protein_coding-intron (ENSMUSG00000070498.3, intron 3 of 8) 120652 ENSMUSG00000070498.3 ENSMUSG00000070498 ENSMUST00000184422 Tmem132b protein_coding Interval_122340 chr5 21522666 21522861 + 0 NA intron (ENSMUSG00000048520.16, intron 16 of 18) protein_coding-intron (ENSMUSG00000048520.16, intron 15 of 19) -20796 ENSMUSG00000039883.5 ENSMUSG00000039883 ENSMUST00000035651 Lrrc17 protein_coding Interval_15758 chr10 56169116 56169481 + 0 NA intron (ENSMUSG00000038122.9, intron 15 of 29) protein_coding-intron (ENSMUSG00000038122.9, intron 15 of 32) 54383 ENSMUSG00000047669.8 ENSMUSG00000047669 ENSMUST00000217668 Msl3l2 protein_coding Interval_45576 chr13 55984729 55985538 + 0 NA intron (ENSMUSG00000114493.2, intron 4 of 5) antisense-intron (ENSMUSG00000114493.2, intron 4 of 5) 45101 ENSMUSG00000114229.1 ENSMUSG00000114229 ENSMUST00000225745 Gm47072 processed_pseudogene Interval_4144 chr1 70634747 70635569 + 0 NA intron (ENSMUSG00000053153.14, intron 7 of 7) protein_coding-intron (ENSMUSG00000053153.14, intron 16 of 16) 38343 ENSMUSG00000075952.1 ENSMUSG00000075952 ENSMUST00000102000 Gm23422 snRNA Interval_145406 chr7 34535158 34535852 + 0 NA Intergenic Intergenic -11701 ENSMUSG00000086631.2 ENSMUSG00000086631 ENSMUST00000206001 Gm12784 lincRNA Interval_107119 chr3 103705079 103705389 + 0 NA Intergenic Intergenic 10436 ENSMUSG00000081910.1 ENSMUSG00000081910 ENSMUST00000122153 Gm15986 processed_pseudogene Interval_160315 chr8 108181858 108182302 + 0 NA intron (ENSMUSG00000038872.10, intron 3 of 4) protein_coding-intron (ENSMUSG00000038872.10, intron 2 of 15) 187521 ENSMUSG00000038872.10 ENSMUSG00000038872 ENSMUST00000043896 Zfhx3 protein_coding Interval_5079 chr1 84822275 84822503 + 0 NA exon (ENSMUSG00000104503.1, exon 1 of 1) TEC-exon (ENSMUSG00000104503.1, exon 1 of 1) 2294 ENSMUSG00000104503.1 ENSMUSG00000104503 ENSMUST00000192396 Gm37738 TEC Interval_57562 chr15 12374912 12376201 + 0 NA exon (ENSMUSG00000022197.16, exon 19 of 24) protein_coding-exon (ENSMUSG00000022197.16, exon 19 of 24) 36824 ENSMUSG00000022197.16 ENSMUSG00000022197 ENSMUST00000189746 Pdzd2 protein_coding Interval_56625 chr14 120924946 120925497 + 0 NA intron (ENSMUSG00000030662.10, intron 6 of 25) protein_coding-intron (ENSMUSG00000030662.10, intron 6 of 25) 9374 ENSMUSG00000030662.10 ENSMUSG00000030662 ENSMUST00000228277 Ipo5 protein_coding Interval_23543 chr11 23275997 23276245 + 0 NA intron (ENSMUSG00000020290.14, intron 5 of 12) protein_coding-intron (ENSMUSG00000020290.14, intron 5 of 25) -8523 ENSMUSG00000020290.14 ENSMUSG00000020290 ENSMUST00000150750 Xpo1 protein_coding Interval_104541 chr3 67557457 67558352 + 0 NA Intergenic Intergenic -4479 ENSMUSG00000103718.1 ENSMUSG00000103718 ENSMUST00000195865 Gm35299 lincRNA Interval_9794 chr1 162421602 162421908 + 0 NA intron (ENSMUSG00000040265.16, intron 1 of 5) protein_coding-intron (ENSMUSG00000040265.16, intron 1 of 19) -14420 ENSMUSG00000040265.16 ENSMUSG00000040265 ENSMUST00000195768 Dnm3 protein_coding Interval_133938 chr6 15948132 15948390 + 0 NA Intergenic Intergenic 112172 ENSMUSG00000108048.1 ENSMUSG00000108048 ENSMUST00000203790 Gm43990 TEC Interval_102996 chr3 34073546 34074156 + 0 NA exon (ENSMUSG00000105176.1, exon 1 of 1) TEC-exon (ENSMUSG00000105176.1, exon 1 of 1) 3192 ENSMUSG00000105176.1 ENSMUSG00000105176 ENSMUST00000197014 Gm43668 TEC Interval_29913 chr11 87709607 87710656 + 0 NA intron (ENSMUSG00000034177.15, intron 1 of 8) protein_coding-intron (ENSMUSG00000034177.15, intron 1 of 8) 8008 ENSMUSG00000085972.1 ENSMUSG00000085972 ENSMUST00000142895 1110028F11Rik sense_intronic Interval_11165 chr1 179790694 179791399 + 0 NA intron (ENSMUSG00000026491.13, intron 5 of 35) protein_coding-intron (ENSMUSG00000026491.13, intron 5 of 35) 11026 ENSMUSG00000026491.13 ENSMUSG00000026491 ENSMUST00000147137 Ahctf1 protein_coding Interval_155769 chr8 37116703 37117672 + 0 NA intron (ENSMUSG00000110285.1, intron 1 of 3) lincRNA-intron (ENSMUSG00000110285.1, intron 1 of 3) 13321 ENSMUSG00000110337.1 ENSMUSG00000110337 ENSMUST00000210149 Gm3433 unprocessed_pseudogene Interval_49212 chr13 109508328 109508645 + 0 NA intron (ENSMUSG00000021699.17, intron 1 of 14) protein_coding-intron (ENSMUSG00000021699.17, intron 1 of 14) 183742 ENSMUSG00000076946.2 ENSMUSG00000076946 ENSMUST00000103758 Mir582 miRNA Interval_113317 chr4 53435027 53435274 + 0 NA Intergenic Intergenic -5521 ENSMUSG00000028412.17 ENSMUSG00000028412 ENSMUST00000133582 Slc44a1 protein_coding Interval_99806 chr2 165034144 165035437 + 0 NA promoter-TSS (ENSMUSG00000039804.15) protein_coding-promoter-TSS (ENSMUSG00000039804.15) 39 ENSMUSG00000039804.15 ENSMUSG00000039804 ENSMUST00000141663 Ncoa5 protein_coding Interval_164777 chr9 41637010 41637680 + 0 NA intron (ENSMUSG00000074415.14, intron 4 of 4) lincRNA-intron (ENSMUSG00000111462.2, intron 2 of 2) -14548 ENSMUSG00000098093.2 ENSMUSG00000098093 ENSMUST00000183325 Gm8707 transcribed_processed_pseudogene Interval_18053 chr10 81560975 81561557 + 0 NA promoter-TSS (ENSMUSG00000054452.10) protein_coding-promoter-TSS (ENSMUSG00000054452.10) 1778 ENSMUSG00000054452.10 ENSMUSG00000054452 ENSMUST00000218432 Tle5 protein_coding Interval_38497 chr12 79625360 79626963 + 0 NA intron (ENSMUSG00000059060.15, intron 1 of 2) protein_coding-intron (ENSMUSG00000059060.15, intron 7 of 10) 298808 ENSMUSG00000059060.15 ENSMUSG00000059060 ENSMUST00000221257 Rad51b protein_coding Interval_113460 chr4 55128110 55128336 + 0 NA Intergenic Intergenic 11660 ENSMUSG00000082704.1 ENSMUSG00000082704 ENSMUST00000120116 Gm12515 processed_pseudogene Interval_57076 chr15 5713436 5713685 + 0 NA promoter-TSS (ENSMUSG00000115185.1) processed_pseudogene-promoter-TSS (ENSMUSG00000115185.1) -474 ENSMUSG00000115185.1 ENSMUSG00000115185 ENSMUST00000226984 Gm18715 processed_pseudogene Interval_17548 chr10 77663710 77664939 + 0 NA Intergenic Intergenic -10965 ENSMUSG00000112007.1 ENSMUSG00000112007 ENSMUST00000219972 Gm18119 processed_pseudogene Interval_140027 chr6 113501419 113503744 + 0 NA promoter-TSS (ENSMUSG00000045009.9) protein_coding-promoter-TSS (ENSMUSG00000045009.9) -694 ENSMUSG00000045009.9 ENSMUSG00000045009 ENSMUST00000205075 Prrt3 protein_coding Interval_71007 chr17 17171193 17171459 + 0 NA Intergenic Intergenic 49911 ENSMUSG00000095990.1 ENSMUSG00000095990 ENSMUST00000147630 Zfp97 protein_coding Interval_51926 chr14 33978509 33979593 + 0 NA promoter-TSS (ENSMUSG00000044519.8) protein_coding-promoter-TSS (ENSMUSG00000044519.8) -287 ENSMUSG00000044519.8 ENSMUSG00000044519 ENSMUST00000166737 Zfp488 protein_coding Interval_12126 chr1 189912866 189913593 + 0 NA TTS (ENSMUSG00000103467.1) TEC-TTS (ENSMUSG00000103467.1) 2730 ENSMUSG00000103467.1 ENSMUSG00000103467 ENSMUST00000191702 Gm38245 TEC Interval_157600 chr8 71654223 71655168 + 0 NA intron (ENSMUSG00000034799.16, intron 16 of 44) protein_coding-intron (ENSMUSG00000034799.16, intron 16 of 43) 17041 ENSMUSG00000034799.16 ENSMUSG00000034799 ENSMUST00000175780 Unc13a protein_coding Interval_74603 chr17 53655940 53657643 + 0 NA intron (ENSMUSG00000000708.14, intron 11 of 17) protein_coding-intron (ENSMUSG00000000708.14, intron 11 of 17) -2520 ENSMUSG00000000708.14 ENSMUSG00000000708 ENSMUST00000171072 Kat2b protein_coding Interval_130843 chr5 131215676 131216440 + 0 NA intron (ENSMUSG00000034040.16, intron 1 of 1) protein_coding-intron (ENSMUSG00000034040.16, intron 1 of 10) -81347 ENSMUSG00000106710.1 ENSMUSG00000106710 ENSMUST00000202871 Gm43166 sense_intronic Interval_132633 chr5 146859967 146860883 + 0 NA Intergenic Intergenic 14660 ENSMUSG00000029641.8 ENSMUSG00000029641 ENSMUST00000198570 Rasl11a protein_coding Interval_170598 chr9 109136955 109137258 + 0 NA Intergenic Intergenic 24914 ENSMUSG00000047237.13 ENSMUSG00000047237 ENSMUST00000199540 Fbxw21 protein_coding Interval_169703 chr9 100507820 100508622 + 0 NA intron (ENSMUSG00000032475.15, intron 2 of 2) protein_coding-intron (ENSMUSG00000032475.15, intron 2 of 3) 22850 ENSMUSG00000100176.1 ENSMUSG00000100176 ENSMUST00000189857 Gm28586 sense_intronic Interval_37613 chr12 70335067 70335643 + 0 NA intron (ENSMUSG00000021071.17, intron 1 of 9) protein_coding-intron (ENSMUSG00000021071.17, intron 1 of 11) -12107 ENSMUSG00000112945.1 ENSMUSG00000112945 ENSMUST00000223521 Gm32151 bidirectional_promoter_lncRNA Interval_48114 chr13 96296498 96297459 + 0 NA Intergenic Intergenic -60133 ENSMUSG00000076343.1 ENSMUSG00000076343 ENSMUST00000102388 Gm25213 miRNA Interval_90730 chr2 32162104 32163280 + 0 NA intron (ENSMUSG00000039262.16, intron 1 of 31) protein_coding-intron (ENSMUSG00000039262.16, intron 1 of 29) -10479 ENSMUSG00000099155.1 ENSMUSG00000099155 ENSMUST00000184513 Gm27805 miRNA Interval_87870 chr19 56728610 56728968 + 0 NA intron (ENSMUSG00000035283.5, intron 2 of 2) protein_coding-intron (ENSMUSG00000035283.5, intron 2 of 2) 4926 ENSMUSG00000035283.5 ENSMUSG00000035283 ENSMUST00000236875 Adrb1 protein_coding Interval_81559 chr18 61688526 61689482 + 0 NA intron (ENSMUSG00000024578.3, intron 1 of 2) protein_coding-intron (ENSMUSG00000024578.3, intron 1 of 2) 3380 ENSMUSG00000102778.1 ENSMUSG00000102778 ENSMUST00000191654 Gm38165 antisense Interval_33312 chr11 115858408 115860278 + 0 NA exon (ENSMUSG00000034427.17, exon 1 of 64) protein_coding-exon (ENSMUSG00000034427.17, exon 1 of 64) -18191 ENSMUSG00000034427.17 ENSMUSG00000034427 ENSMUST00000141947 Myo15b protein_coding Interval_133901 chr6 14640915 14641146 + 0 NA Intergenic Intergenic -70005 ENSMUSG00000107657.1 ENSMUSG00000107657 ENSMUST00000204864 Gm44446 processed_pseudogene Interval_12526 chr1 194842900 194843183 + 0 NA Intergenic Intergenic -15616 ENSMUSG00000084631.1 ENSMUSG00000084631 ENSMUST00000122682 Gm23885 misc_RNA Interval_50072 chr14 7808138 7809902 + 0 NA Intergenic Intergenic 7812 ENSMUSG00000049460.7 ENSMUSG00000049460 ENSMUST00000057361 Gm8396 processed_pseudogene Interval_99120 chr2 157338429 157338912 + 0 NA intron (ENSMUSG00000027643.9, intron 1 of 4) protein_coding-intron (ENSMUSG00000027643.9, intron 1 of 4) 8836 ENSMUSG00000027643.9 ENSMUSG00000027643 ENSMUST00000126630 Ghrh protein_coding Interval_28167 chr11 73388600 73389061 + 0 NA exon (ENSMUSG00000069824.5, exon 3 of 3) polymorphic_pseudogene-exon (ENSMUSG00000069824.5, exon 3 of 3) -1104 ENSMUSG00000108577.1 ENSMUSG00000108577 ENSMUST00000206193 Gm17811 processed_pseudogene Interval_95152 chr2 104371516 104372802 + 0 NA intron (ENSMUSG00000068373.15, intron 1 of 20) protein_coding-intron (ENSMUSG00000068373.15, intron 1 of 20) 38854 ENSMUSG00000068373.15 ENSMUSG00000068373 ENSMUST00000149165 D430041D05Rik protein_coding Interval_32189 chr11 106018585 106018910 + 0 NA intron (ENSMUSG00000001901.15, intron 5 of 12) protein_coding-intron (ENSMUSG00000001901.15, intron 5 of 12) 10544 ENSMUSG00000001901.15 ENSMUSG00000001901 ENSMUST00000140695 Kcnh6 protein_coding Interval_3021 chr1 52267562 52267829 + 0 NA Intergenic Intergenic 21400 ENSMUSG00000099648.1 ENSMUSG00000099648 ENSMUST00000185256 Gm5975 processed_pseudogene Interval_42740 chr13 18809662 18812088 + 0 NA intron (ENSMUSG00000041236.8, intron 5 of 7) protein_coding-intron (ENSMUSG00000041236.8, intron 8 of 28) 31032 ENSMUSG00000041236.8 ENSMUSG00000041236 ENSMUST00000222102 Vps41 protein_coding Interval_172535 chrX 35894279 35894452 + 0 NA intron (ENSMUSG00000031093.14, intron 1 of 52) protein_coding-intron (ENSMUSG00000031093.14, intron 1 of 52) 56238 ENSMUSG00000087847.1 ENSMUSG00000087847 ENSMUST00000157222 Gm25624 scaRNA Interval_33041 chr11 113828197 113828786 + 0 NA exon (ENSMUSG00000041592.16, exon 30 of 45) protein_coding-exon (ENSMUSG00000041592.16, exon 30 of 45) -18068 ENSMUSG00000041592.16 ENSMUSG00000041592 ENSMUST00000144301 Sdk2 protein_coding Interval_10933 chr1 177188865 177189195 + 0 NA intron (ENSMUSG00000019699.16, intron 1 of 12) protein_coding-intron (ENSMUSG00000019699.16, intron 1 of 12) -18168 ENSMUSG00000103646.1 ENSMUSG00000103646 ENSMUST00000195379 Gm37706 TEC Interval_53282 chr14 55761629 55763020 + 0 NA exon (ENSMUSG00000040432.5, exon 2 of 2) protein_coding-exon (ENSMUSG00000040432.5, exon 2 of 2) 888 ENSMUSG00000040432.5 ENSMUSG00000040432 ENSMUST00000228302 Ltb4r2 protein_coding Interval_139616 chr6 103296091 103296643 + 0 NA Intergenic Intergenic -16381 ENSMUSG00000108296.1 ENSMUSG00000108296 ENSMUST00000203805 Gm44295 processed_pseudogene Interval_8853 chr1 151559978 151561020 + 0 NA Intergenic Intergenic -9556 ENSMUSG00000100357.1 ENSMUSG00000100357 ENSMUST00000191460 Gm28181 lincRNA Interval_117920 chr4 127060608 127061431 + 0 NA promoter-TSS (ENSMUSG00000043872.14) protein_coding-promoter-TSS (ENSMUSG00000043872.14) 41 ENSMUSG00000043872.14 ENSMUSG00000043872 ENSMUST00000136186 Zmym1 protein_coding Interval_67094 chr16 42874609 42876534 + 0 NA promoter-TSS (ENSMUSG00000022708.16) protein_coding-promoter-TSS (ENSMUSG00000022708.16) 169 ENSMUSG00000075070.6 ENSMUSG00000075070 ENSMUST00000130331 4932412D23Rik lincRNA Interval_172663 chrX 41705814 41706095 + 0 NA Intergenic Intergenic -19577 ENSMUSG00000082966.1 ENSMUSG00000082966 ENSMUST00000119873 Gm14614 processed_pseudogene Interval_2037 chr1 36043880 36044273 + 0 NA Intergenic Intergenic -13058 ENSMUSG00000102434.1 ENSMUSG00000102434 ENSMUST00000195698 Gm38049 TEC Interval_26351 chr11 57143360 57143675 + 0 NA intron (ENSMUSG00000020524.16, intron 2 of 15) protein_coding-intron (ENSMUSG00000020524.16, intron 2 of 15) -33001 ENSMUSG00000020524.16 ENSMUSG00000020524 ENSMUST00000173531 Gria1 protein_coding Interval_159402 chr8 94341005 94342083 + 0 NA intron (ENSMUSG00000031766.4, intron 12 of 23) protein_coding-intron (ENSMUSG00000031766.4, intron 12 of 24) -4271 ENSMUSG00000031766.4 ENSMUSG00000031766 ENSMUST00000211905 Slc12a3 protein_coding Interval_164990 chr9 43729461 43730871 + 0 NA intron (ENSMUSG00000111334.1, intron 1 of 4) processed_transcript-intron (ENSMUSG00000111334.1, intron 1 of 4) 6270 ENSMUSG00000111129.1 ENSMUSG00000111129 ENSMUST00000213140 Gm47542 TEC Interval_42620 chr13 16938887 16940228 + 0 NA intron (ENSMUSG00000113851.1, intron 1 of 1) protein_coding-intron (ENSMUSG00000055137.7, intron 13 of 13) 1948 ENSMUSG00000113851.1 ENSMUSG00000113851 ENSMUST00000223465 Gm48503 antisense Interval_44282 chr13 43327255 43327467 + 0 NA Intergenic Intergenic -23956 ENSMUSG00000051335.6 ENSMUSG00000051335 ENSMUST00000222779 Gfod1 protein_coding Interval_170629 chr9 109701048 109701240 + 0 NA intron (ENSMUSG00000074059.3, intron 3 of 9) protein_coding-intron (ENSMUSG00000074059.3, intron 3 of 9) 1556 ENSMUSG00000074059.3 ENSMUSG00000074059 ENSMUST00000098359 Fbxw18 protein_coding Interval_87653 chr19 54012678 54013034 + 0 NA intron (ENSMUSG00000024976.14, intron 2 of 3) protein_coding-intron (ENSMUSG00000024976.14, intron 3 of 8) -11449 ENSMUSG00000117981.1 ENSMUSG00000117981 ENSMUST00000237905 4930484I04Rik antisense Interval_156824 chr8 60884324 60884593 + 0 NA Intergenic Intergenic -21573 ENSMUSG00000038005.15 ENSMUSG00000038005 ENSMUST00000211016 Hpf1 protein_coding Interval_55988 chr14 103700659 103700998 + 0 NA intron (ENSMUSG00000055717.13, intron 6 of 7) protein_coding-intron (ENSMUSG00000055717.13, intron 5 of 6) -1386 ENSMUSG00000089707.1 ENSMUSG00000089707 ENSMUST00000160117 Slain1os antisense Interval_39182 chr12 85647564 85647826 + 0 NA Intergenic Intergenic -14747 ENSMUSG00000113249.1 ENSMUSG00000113249 ENSMUST00000222443 Gm33312 processed_pseudogene Interval_99236 chr2 158307988 158308691 + 0 NA intron (ENSMUSG00000016024.9, intron 1 of 7) protein_coding-intron (ENSMUSG00000016024.9, intron 1 of 14) 1846 ENSMUSG00000016024.9 ENSMUSG00000016024 ENSMUST00000129811 Lbp protein_coding Interval_116802 chr4 117356069 117356553 + 0 NA intron (ENSMUSG00000028677.19, intron 2 of 2) protein_coding-intron (ENSMUSG00000028677.19, intron 2 of 14) 60167 ENSMUSG00000085749.1 ENSMUSG00000085749 ENSMUST00000139618 Gm12843 antisense Interval_165212 chr9 45374831 45375587 + 0 NA exon (ENSMUSG00000066705.7, exon 2 of 2) protein_coding-exon (ENSMUSG00000066705.7, exon 2 of 2) 5024 ENSMUSG00000066705.7 ENSMUSG00000066705 ENSMUST00000215281 Fxyd6 protein_coding Interval_159493 chr8 95067024 95068025 + 0 NA intron (ENSMUSG00000031786.7, intron 7 of 17) protein_coding-intron (ENSMUSG00000031786.7, intron 7 of 17) 12413 ENSMUSG00000031786.7 ENSMUSG00000031786 ENSMUST00000212980 Drc7 protein_coding Interval_165899 chr9 54482923 54483592 + 0 NA intron (ENSMUSG00000041268.17, intron 1 of 15) protein_coding-intron (ENSMUSG00000041268.17, intron 1 of 43) -53928 ENSMUSG00000087801.1 ENSMUSG00000087801 ENSMUST00000157176 Gm25980 misc_RNA Interval_145704 chr7 37543044 37543767 + 0 NA intron (ENSMUSG00000043456.17, intron 1 of 3) protein_coding-intron (ENSMUSG00000043456.17, intron 4 of 5) 24985 ENSMUSG00000043456.17 ENSMUSG00000043456 ENSMUST00000206332 Zfp536 protein_coding Interval_130858 chr5 132687055 132687686 + 0 NA Intergenic Intergenic -108783 ENSMUSG00000103500.1 ENSMUSG00000103500 ENSMUST00000192042 Gm38373 TEC Interval_7627 chr1 132602105 132602622 + 0 NA intron (ENSMUSG00000026442.14, intron 18 of 19) protein_coding-intron (ENSMUSG00000026442.14, intron 18 of 26) 22149 ENSMUSG00000026442.14 ENSMUSG00000026442 ENSMUST00000189219 Nfasc protein_coding Interval_150703 chr7 113594169 113594904 + 0 NA Intergenic Intergenic 1674 ENSMUSG00000109968.1 ENSMUSG00000109968 ENSMUST00000211320 Gm45612 processed_pseudogene Interval_166462 chr9 59686917 59688069 + 0 NA intron (ENSMUSG00000074259.10, intron 1 of 8) protein_coding-intron (ENSMUSG00000074259.10, intron 1 of 8) 14679 ENSMUSG00000111394.1 ENSMUSG00000111394 ENSMUST00000214037 Gm49759 TEC Interval_98034 chr2 146971165 146971491 + 0 NA Intergenic Intergenic -58224 ENSMUSG00000027433.5 ENSMUSG00000027433 ENSMUST00000137358 Xrn2 protein_coding Interval_172583 chrX 37078336 37078768 + 0 NA Intergenic Intergenic 4490 ENSMUSG00000065642.1 ENSMUSG00000065642 ENSMUST00000083708 Snora69 snoRNA Interval_44181 chr13 41650326 41651007 + 0 NA promoter-TSS (ENSMUSG00000054258.9) lincRNA-promoter-TSS (ENSMUSG00000054258.9) 1223 ENSMUSG00000054258.9 ENSMUSG00000054258 ENSMUST00000067176 Gm5082 lincRNA Interval_117036 chr4 119137926 119138536 + 0 NA TTS (ENSMUSG00000028645.11) protein_coding-TTS (ENSMUSG00000028645.11) 570 ENSMUSG00000085505.1 ENSMUSG00000085505 ENSMUST00000143801 Gm12868 antisense Interval_24633 chr11 35473675 35473971 + 0 NA intron (ENSMUSG00000056427.10, intron 2 of 3) protein_coding-intron (ENSMUSG00000056427.10, intron 4 of 35) 123754 ENSMUSG00000086311.1 ENSMUSG00000086311 ENSMUST00000124503 Gm12122 sense_intronic Interval_83895 chr19 5414636 5415981 + 0 NA TTS (ENSMUSG00000051133.3) processed_pseudogene-TTS (ENSMUSG00000051133.3) 451 ENSMUSG00000051133.3 ENSMUSG00000051133 ENSMUST00000050339 Gm6293 processed_pseudogene Interval_6752 chr1 119196721 119197709 + 0 NA Intergenic Intergenic 39629 ENSMUSG00000096939.1 ENSMUSG00000096939 ENSMUST00000181691 Gm8321 processed_pseudogene Interval_68862 chr16 87670889 87671239 + 0 NA Intergenic Intergenic -27940 ENSMUSG00000025612.5 ENSMUSG00000025612 ENSMUST00000156958 Bach1 protein_coding Interval_66976 chr16 38966236 38966476 + 0 NA TTS (ENSMUSG00000086175.2) antisense-TTS (ENSMUSG00000086175.2) 39147 ENSMUSG00000089607.1 ENSMUSG00000089607 ENSMUST00000158982 Gm22500 snRNA Interval_73857 chr17 44695951 44696708 + 0 NA intron (ENSMUSG00000039153.17, intron 4 of 6) protein_coding-intron (ENSMUSG00000039153.17, intron 4 of 7) -13893 ENSMUSG00000089849.1 ENSMUSG00000089849 ENSMUST00000161664 Runx2os2 antisense Interval_45171 chr13 52915740 52915972 + 0 NA intron (ENSMUSG00000021460.17, intron 3 of 3) protein_coding-intron (ENSMUSG00000021460.17, intron 3 of 9) -2910 ENSMUSG00000021460.17 ENSMUSG00000021460 ENSMUST00000151469 Auh protein_coding Interval_20215 chr10 116024057 116024438 + 0 NA intron (ENSMUSG00000020151.16, intron 1 of 2) protein_coding-intron (ENSMUSG00000020151.16, intron 1 of 13) 89455 ENSMUSG00000074734.3 ENSMUSG00000074734 ENSMUST00000219858 Taf7l2 protein_coding Interval_113550 chr4 56475535 56476332 + 0 NA Intergenic Intergenic 88131 ENSMUSG00000082613.1 ENSMUSG00000082613 ENSMUST00000122075 Gm12518 processed_pseudogene Interval_119059 chr4 135260662 135261381 + 0 NA intron (ENSMUSG00000037242.8, intron 1 of 2) protein_coding-intron (ENSMUSG00000037242.8, intron 1 of 5) 11793 ENSMUSG00000037242.8 ENSMUSG00000037242 ENSMUST00000143370 Clic4 protein_coding Interval_146742 chr7 49850735 49851562 + 0 NA intron (ENSMUSG00000030505.17, intron 15 of 15) protein_coding-intron (ENSMUSG00000030505.17, intron 15 of 15) 36946 ENSMUSG00000109154.1 ENSMUSG00000109154 ENSMUST00000208559 Gm44822 TEC Interval_107112 chr3 103650901 103651847 + 0 NA Intergenic Intergenic -5306 ENSMUSG00000087119.4 ENSMUSG00000087119 ENSMUST00000117271 Atg4a-ps protein_coding Interval_108799 chr3 131564233 131565289 + 0 NA promoter-TSS (ENSMUSG00000028032.13) protein_coding-promoter-TSS (ENSMUSG00000028032.13) -138 ENSMUSG00000028032.13 ENSMUSG00000028032 ENSMUST00000196638 Papss1 protein_coding Interval_76620 chr17 82827282 82828041 + 0 NA Intergenic Intergenic -128335 ENSMUSG00000117472.1 ENSMUSG00000117472 ENSMUST00000234284 Gm4601 processed_pseudogene Interval_64867 chr16 16806487 16807801 + 0 NA intron (ENSMUSG00000022783.11, intron 1 of 7) protein_coding-intron (ENSMUSG00000022783.11, intron 2 of 10) 12979 ENSMUSG00000116648.1 ENSMUSG00000116648 ENSMUST00000231756 Rpl31-ps12 processed_pseudogene Interval_68281 chr16 72292142 72292515 + 0 NA Intergenic Intergenic -58001 ENSMUSG00000116769.1 ENSMUSG00000116769 ENSMUST00000231977 8030451O07Rik lincRNA Interval_39425 chr12 87330736 87332065 + 0 NA intron (ENSMUSG00000021036.10, intron 3 of 5) protein_coding-intron (ENSMUSG00000021036.10, intron 9 of 11) -2787 ENSMUSG00000021036.10 ENSMUSG00000021036 ENSMUST00000167911 Sptlc2 protein_coding Interval_46432 chr13 65216825 65218838 + 0 NA Intergenic Intergenic 5720 ENSMUSG00000113500.1 ENSMUSG00000113500 ENSMUST00000220741 Gm47249 lincRNA Interval_160941 chr8 115715077 115715533 + 0 NA Intergenic Intergenic -7511 ENSMUSG00000055435.6 ENSMUSG00000055435 ENSMUST00000109104 Maf protein_coding Interval_125832 chr5 74813107 74814139 + 0 NA Intergenic Intergenic 63741 ENSMUSG00000106987.1 ENSMUSG00000106987 ENSMUST00000202942 Gm42575 lincRNA Interval_42130 chr13 9051856 9052697 + 0 NA intron (ENSMUSG00000113543.1, intron 2 of 4) lincRNA-intron (ENSMUSG00000113543.1, intron 2 of 2) 24175 ENSMUSG00000113543.1 ENSMUSG00000113543 ENSMUST00000221989 Gm36264 lincRNA Interval_109567 chr3 144507580 144508015 + 0 NA intron (ENSMUSG00000040151.9, intron 1 of 6) protein_coding-intron (ENSMUSG00000040151.9, intron 1 of 6) -10625 ENSMUSG00000104903.1 ENSMUSG00000104903 ENSMUST00000196451 Gm43707 sense_intronic Interval_164236 chr9 33647776 33648384 + 0 NA Intergenic Intergenic 50715 ENSMUSG00000111276.1 ENSMUSG00000111276 ENSMUST00000215867 Gm47778 lincRNA Interval_145898 chr7 41541679 41541949 + 0 NA Intergenic Intergenic 31848 ENSMUSG00000090744.7 ENSMUSG00000090744 ENSMUST00000171059 Gm6871 protein_coding Interval_34118 chr11 120736761 120737053 + 0 NA Intergenic Intergenic -4963 ENSMUSG00000025150.10 ENSMUSG00000025150 ENSMUST00000149450 Cbr2 protein_coding Interval_149095 chr7 93152987 93153481 + 0 NA Intergenic Intergenic -5263 ENSMUSG00000088877.1 ENSMUSG00000088877 ENSMUST00000158252 Gm25860 snoRNA Interval_21450 chr10 128673505 128674850 + 0 NA promoter-TSS (ENSMUSG00000049858.8) protein_coding-promoter-TSS (ENSMUSG00000049858.8) -104 ENSMUSG00000049858.8 ENSMUSG00000049858 ENSMUST00000054764 Suox protein_coding Interval_6019 chr1 94022209 94022965 + 0 NA exon (ENSMUSG00000034000.15, exon 2 of 4) protein_coding-exon (ENSMUSG00000034000.15, exon 2 of 4) 2136 ENSMUSG00000034000.15 ENSMUSG00000034000 ENSMUST00000050890 Neu4 protein_coding Interval_965 chr1 13518293 13518623 + 0 NA Intergenic Intergenic 71417 ENSMUSG00000025935.10 ENSMUSG00000025935 ENSMUST00000188377 Tram1 protein_coding Interval_143848 chr7 16737650 16738882 + 0 NA promoter-TSS (ENSMUSG00000008036.11) protein_coding-promoter-TSS (ENSMUSG00000008036.11) -272 ENSMUSG00000008036.11 ENSMUSG00000008036 ENSMUST00000141496 Ap2s1 protein_coding Interval_145331 chr7 33836731 33837827 + 0 NA Intergenic Intergenic -7657 ENSMUSG00000081510.1 ENSMUSG00000081510 ENSMUST00000120055 Gm12768 processed_pseudogene Interval_158790 chr8 86584936 86585960 + 0 NA Intergenic Intergenic -1514 ENSMUSG00000106513.1 ENSMUSG00000106513 ENSMUST00000200165 Gm44348 miRNA Interval_130880 chr5 133100405 133100667 + 0 NA Intergenic Intergenic 298858 ENSMUSG00000088123.1 ENSMUSG00000088123 ENSMUST00000157498 Gm25722 misc_RNA Interval_70091 chr17 5258930 5259555 + 0 NA intron (ENSMUSG00000069729.14, intron 5 of 18) protein_coding-intron (ENSMUSG00000069729.14, intron 5 of 18) -129521 ENSMUSG00000101133.1 ENSMUSG00000101133 ENSMUST00000190732 Gm29050 antisense Interval_114981 chr4 88031278 88034142 + 0 NA promoter-TSS (ENSMUSG00000084809.1) antisense-promoter-TSS (ENSMUSG00000084809.1) -791 ENSMUSG00000084809.1 ENSMUSG00000084809 ENSMUST00000130576 Gm12631 antisense Interval_121752 chr5 6675702 6676859 + 0 NA Intergenic Intergenic -29472 ENSMUSG00000105487.1 ENSMUSG00000105487 ENSMUST00000197482 Gm43324 processed_pseudogene Interval_71025 chr17 17256784 17257118 + 0 NA intron (ENSMUSG00000116802.1, intron 1 of 3) lincRNA-intron (ENSMUSG00000116802.1, intron 1 of 3) -5399 ENSMUSG00000116802.1 ENSMUSG00000116802 ENSMUST00000231376 Gm5165 lincRNA Interval_17241 chr10 75228885 75230469 + 0 NA promoter-TSS (ENSMUSG00000033444.14) protein_coding-promoter-TSS (ENSMUSG00000033444.14) -31290 ENSMUSG00000033444.14 ENSMUSG00000033444 ENSMUST00000218644 Specc1l protein_coding Interval_78389 chr18 12423242 12423549 + 0 NA intron (ENSMUSG00000024421.16, intron 11 of 74) protein_coding-intron (ENSMUSG00000024421.16, intron 11 of 74) 57596 ENSMUSG00000099663.1 ENSMUSG00000099663 ENSMUST00000189120 Gm29201 processed_pseudogene Interval_36454 chr12 45067211 45067611 + 0 NA intron (ENSMUSG00000046314.16, intron 1 of 1) protein_coding-intron (ENSMUSG00000046314.16, intron 1 of 5) 6815 ENSMUSG00000046314.16 ENSMUSG00000046314 ENSMUST00000218249 Stxbp6 protein_coding Interval_20485 chr10 117883350 117883801 + 0 NA Intergenic Intergenic -16860 ENSMUSG00000112711.1 ENSMUSG00000112711 ENSMUST00000217849 Gm32552 lincRNA Interval_50413 chr14 12624344 12624709 + 0 NA intron (ENSMUSG00000054423.14, intron 3 of 28) protein_coding-intron (ENSMUSG00000054423.14, intron 3 of 28) 5858 ENSMUSG00000114453.1 ENSMUSG00000114453 ENSMUST00000225784 Gm17805 processed_pseudogene Interval_84442 chr19 10927061 10927322 + 0 NA Intergenic Intergenic -9969 ENSMUSG00000034117.3 ENSMUSG00000034117 ENSMUST00000037261 Ptgdr2 protein_coding Interval_105865 chr3 89817047 89817444 + 0 NA Intergenic Intergenic -3753 ENSMUSG00000106564.1 ENSMUSG00000106564 ENSMUST00000199694 Gm8969 processed_pseudogene Interval_156917 chr8 61670641 61672545 + 0 NA intron (ENSMUSG00000058056.16, intron 10 of 21) protein_coding-intron (ENSMUSG00000058056.16, intron 10 of 19) 149923 ENSMUSG00000110131.1 ENSMUSG00000110131 ENSMUST00000210904 Gm18066 processed_pseudogene Interval_53038 chr14 53738002 53738420 + 0 NA promoter-TSS (ENSMUSG00000085302.3) TR_V_pseudogene-promoter-TSS (ENSMUSG00000085302.3) -164 ENSMUSG00000085302.3 ENSMUSG00000085302 ENSMUST00000130122 Trav8-2 TR_V_pseudogene Interval_10741 chr1 173868639 173870135 + 0 NA promoter-TSS (ENSMUSG00000090272.9) protein_coding-promoter-TSS (ENSMUSG00000090272.9) -6888 ENSMUSG00000090272.9 ENSMUSG00000090272 ENSMUST00000187636 Mndal protein_coding Interval_141676 chr6 133186710 133186917 + 0 NA Intergenic Intergenic -4979 ENSMUSG00000095447.1 ENSMUSG00000095447 ENSMUST00000179169 Gm23403 miRNA Interval_40971 chr12 110355474 110356361 + 0 NA Intergenic Intergenic 30532 ENSMUSG00000114183.1 ENSMUSG00000114183 ENSMUST00000222991 Gm47195 processed_pseudogene Interval_130834 chr5 131094127 131095927 + 0 NA intron (ENSMUSG00000034040.16, intron 3 of 3) protein_coding-intron (ENSMUSG00000034040.16, intron 3 of 10) 39684 ENSMUSG00000106710.1 ENSMUSG00000106710 ENSMUST00000202871 Gm43166 sense_intronic Interval_60265 chr15 71531870 71533029 + 0 NA intron (ENSMUSG00000036800.8, intron 4 of 8) protein_coding-intron (ENSMUSG00000036800.8, intron 4 of 19) 195389 ENSMUSG00000036800.8 ENSMUSG00000036800 ENSMUST00000229189 Fam135b protein_coding Interval_97021 chr2 130579972 130581600 + 0 NA exon (ENSMUSG00000037727.6, exon 3 of 3) protein_coding-exon (ENSMUSG00000037727.6, exon 3 of 3) 1768 ENSMUSG00000037727.6 ENSMUSG00000037727 ENSMUST00000046001 Avp protein_coding Interval_50514 chr14 14489697 14490043 + 0 NA Intergenic Intergenic -40926 ENSMUSG00000114737.1 ENSMUSG00000114737 ENSMUST00000224271 Gm8483 processed_pseudogene Interval_138765 chr6 91704266 91704445 + 0 NA intron (ENSMUSG00000030096.8, intron 1 of 2) protein_coding-intron (ENSMUSG00000030096.8, intron 2 of 14) -5051 ENSMUSG00000108526.1 ENSMUSG00000108526 ENSMUST00000206938 Gm45828 TEC Interval_130592 chr5 129072773 129073695 + 0 NA Intergenic Intergenic -23523 ENSMUSG00000044017.16 ENSMUSG00000044017 ENSMUST00000156437 Adgrd1 protein_coding Interval_29174 chr11 81041618 81042193 + 0 NA intron (ENSMUSG00000020704.13, intron 1 of 9) protein_coding-intron (ENSMUSG00000020704.13, intron 1 of 9) -4889 ENSMUSG00000082027.1 ENSMUSG00000082027 ENSMUST00000119111 Gm11416 processed_pseudogene Interval_17670 chr10 78801607 78801990 + 0 NA intron (ENSMUSG00000005357.9, intron 7 of 9) protein_coding-intron (ENSMUSG00000005357.9, intron 7 of 9) 21096 ENSMUSG00000005357.9 ENSMUSG00000005357 ENSMUST00000217717 Slc1a6 protein_coding Interval_117641 chr4 125210839 125212291 + 0 NA Intergenic Intergenic -17032 ENSMUSG00000087010.1 ENSMUSG00000087010 ENSMUST00000130055 1700041M05Rik lincRNA Interval_120682 chr4 150075829 150076644 + 0 NA Intergenic Intergenic 7697 ENSMUSG00000102813.1 ENSMUSG00000102813 ENSMUST00000194216 Gm37795 TEC Interval_141807 chr6 134625544 134626016 + 0 NA TTS (ENSMUSG00000108121.1) TEC-TTS (ENSMUSG00000108121.1) 798 ENSMUSG00000108121.1 ENSMUSG00000108121 ENSMUST00000203765 Gm43952 TEC Interval_51594 chr14 30577725 30578056 + 0 NA Intergenic Intergenic 5741 ENSMUSG00000093156.1 ENSMUSG00000093156 ENSMUST00000175415 Mir3076 miRNA Interval_65092 chr16 18984386 18984655 + 0 NA Intergenic Intergenic 34182 ENSMUSG00000105028.1 ENSMUSG00000105028 ENSMUST00000198129 Gm18747 processed_pseudogene Interval_56423 chr14 118656935 118658702 + 0 NA intron (ENSMUSG00000032849.14, intron 3 of 30) protein_coding-intron (ENSMUSG00000032849.14, intron 3 of 30) 41674 ENSMUSG00000032849.14 ENSMUSG00000032849 ENSMUST00000227480 Abcc4 protein_coding Interval_41317 chr12 112673598 112675771 + 0 NA promoter-TSS (ENSMUSG00000001729.14) protein_coding-promoter-TSS (ENSMUSG00000001729.14) -4144 ENSMUSG00000037638.5 ENSMUSG00000037638 ENSMUST00000173942 Zbtb42 protein_coding Interval_152897 chr7 139576761 139577103 + 0 NA intron (ENSMUSG00000025477.14, intron 13 of 15) protein_coding-intron (ENSMUSG00000025477.14, intron 13 of 15) 5858 ENSMUSG00000041309.17 ENSMUSG00000041309 ENSMUST00000106095 Nkx6-2 protein_coding Interval_60423 chr15 73655437 73656019 + 0 NA Intergenic Intergenic 9876 ENSMUSG00000099958.1 ENSMUSG00000099958 ENSMUST00000188278 1700010B13Rik processed_transcript Interval_165249 chr9 45768007 45769141 + 0 NA exon (ENSMUSG00000043987.18, exon 29 of 30) protein_coding-exon (ENSMUSG00000043987.18, exon 29 of 30) 25692 ENSMUSG00000043987.18 ENSMUSG00000043987 ENSMUST00000214868 Cep164 protein_coding Interval_50528 chr14 14686044 14686630 + 0 NA Intergenic Intergenic -16742 ENSMUSG00000021733.11 ENSMUSG00000021733 ENSMUST00000225613 Slc4a7 protein_coding Interval_95800 chr2 116651781 116652866 + 0 NA Intergenic Intergenic -123833 ENSMUSG00000081787.1 ENSMUSG00000081787 ENSMUST00000120190 Gm13991 processed_pseudogene Interval_106248 chr3 94902715 94904390 + 0 NA Intergenic Intergenic 16871 ENSMUSG00000087720.1 ENSMUSG00000087720 ENSMUST00000157095 Gm26279 snRNA Interval_50272 chr14 11571373 11572530 + 0 NA intron (ENSMUSG00000021745.14, intron 1 of 3) protein_coding-intron (ENSMUSG00000021745.14, intron 1 of 29) -51181 ENSMUSG00000114849.1 ENSMUSG00000114849 ENSMUST00000224543 Gm48595 lincRNA Interval_135972 chr6 49177334 49177539 + 0 NA intron (ENSMUSG00000029814.10, intron 2 of 3) protein_coding-intron (ENSMUSG00000029814.10, intron 2 of 14) 4677 ENSMUSG00000107727.1 ENSMUSG00000107727 ENSMUST00000203553 Gm18010 processed_pseudogene Interval_92944 chr2 68885438 68886915 + 0 NA intron (ENSMUSG00000027035.10, intron 1 of 10) protein_coding-intron (ENSMUSG00000027035.10, intron 1 of 9) -5190 ENSMUSG00000103233.1 ENSMUSG00000103233 ENSMUST00000192720 Gm37159 TEC Interval_18269 chr10 84488172 84488969 + 0 NA promoter-TSS (ENSMUSG00000020033.2) lincRNA-promoter-TSS (ENSMUSG00000020033.2) -164 ENSMUSG00000020033.2 ENSMUSG00000020033 ENSMUST00000168525 4930463O16Rik lincRNA Interval_17770 chr10 79983758 79985902 + 0 NA promoter-TSS (ENSMUSG00000013858.14) protein_coding-promoter-TSS (ENSMUSG00000013858.14) -676 ENSMUSG00000095615.1 ENSMUSG00000095615 ENSMUST00000179260 Gm26243 snRNA Interval_165410 chr9 47578986 47579649 + 0 NA intron (ENSMUSG00000032076.20, intron 1 of 8) protein_coding-intron (ENSMUSG00000032076.20, intron 1 of 8) 48965 ENSMUSG00000032076.20 ENSMUSG00000032076 ENSMUST00000034581 Cadm1 protein_coding Interval_166989 chr9 64339424 64341605 + 0 NA promoter-TSS (ENSMUSG00000032396.17) protein_coding-promoter-TSS (ENSMUSG00000032396.17) 743 ENSMUSG00000032396.17 ENSMUSG00000032396 ENSMUST00000128129 Dis3l protein_coding Interval_51672 chr14 31259458 31259710 + 0 NA TTS (ENSMUSG00000019027.8) protein_coding-TTS (ENSMUSG00000019027.8) 8046 ENSMUSG00000021901.10 ENSMUSG00000021901 ENSMUST00000185700 Bap1 protein_coding Interval_172654 chrX 40707091 40707789 + 0 NA Intergenic Intergenic 15655 ENSMUSG00000083484.1 ENSMUSG00000083484 ENSMUST00000120644 Gm14574 processed_pseudogene Interval_60377 chr15 73281448 73281717 + 0 NA intron (ENSMUSG00000022607.18, intron 15 of 29) protein_coding-intron (ENSMUSG00000022607.18, intron 14 of 31) -26700 ENSMUSG00000065612.1 ENSMUSG00000065612 ENSMUST00000083678 Mir151 miRNA Interval_108669 chr3 129968750 129971246 + 0 NA promoter-TSS (ENSMUSG00000027994.14) protein_coding-promoter-TSS (ENSMUSG00000027994.14) 78 ENSMUSG00000027994.14 ENSMUSG00000027994 ENSMUST00000122961 Mcub protein_coding Interval_156661 chr8 56561584 56561833 + 0 NA TTS (ENSMUSG00000076392.1) miRNA-TTS (ENSMUSG00000076392.1) 407 ENSMUSG00000076392.1 ENSMUSG00000076392 ENSMUST00000102437 Gm25992 miRNA Interval_123564 chr5 33509034 33509239 + 0 NA Intergenic Intergenic -71672 ENSMUSG00000107248.1 ENSMUSG00000107248 ENSMUST00000200726 Gm43851 lincRNA Interval_53079 chr14 54284088 54284465 + 0 NA exon (ENSMUSG00000048153.6, exon 1 of 2) protein_coding-exon (ENSMUSG00000048153.6, exon 1 of 2) 663 ENSMUSG00000048153.6 ENSMUSG00000048153 ENSMUST00000059996 Olfr49 protein_coding Interval_11479 chr1 182114109 182114363 + 0 NA Intergenic Intergenic 13953 ENSMUSG00000103018.1 ENSMUSG00000103018 ENSMUST00000194902 Gm17968 processed_pseudogene Interval_152063 chr7 128705346 128706309 + 0 NA intron (ENSMUSG00000048170.14, intron 11 of 16) protein_coding-intron (ENSMUSG00000048170.14, intron 11 of 15) 9031 ENSMUSG00000048170.14 ENSMUSG00000048170 ENSMUST00000146352 Mcmbp protein_coding Interval_26715 chr11 59941086 59942471 + 0 NA Intergenic Intergenic 6364 ENSMUSG00000085260.7 ENSMUSG00000085260 ENSMUST00000146334 Med9os antisense Interval_128565 chr5 114060022 114060594 + 0 NA intron (ENSMUSG00000042078.14, intron 5 of 6) protein_coding-intron (ENSMUSG00000042078.14, intron 4 of 15) -5206 ENSMUSG00000029592.11 ENSMUSG00000029592 ENSMUST00000198457 Usp30 protein_coding Interval_152384 chr7 132641607 132641943 + 0 NA TTS (ENSMUSG00000030946.13) protein_coding-TTS (ENSMUSG00000030946.13) 18109 ENSMUSG00000087348.1 ENSMUSG00000087348 ENSMUST00000132849 Gm15582 antisense Interval_171063 chr9 114067628 114068137 + 0 NA intron (ENSMUSG00000086596.2, intron 2 of 4) protein_coding-intron (ENSMUSG00000086596.2, intron 2 of 4) 10742 ENSMUSG00000086596.2 ENSMUSG00000086596 ENSMUST00000135338 Susd5 protein_coding Interval_149373 chr7 97787968 97789349 + 0 NA exon (ENSMUSG00000030774.13, exon 1 of 2) protein_coding-exon (ENSMUSG00000030774.13, exon 1 of 2) -50369 ENSMUSG00000042797.9 ENSMUSG00000042797 ENSMUST00000205932 Aqp11 protein_coding Interval_90303 chr2 29669595 29670942 + 0 NA intron (ENSMUSG00000039844.20, intron 1 of 23) protein_coding-intron (ENSMUSG00000039844.20, intron 1 of 25) 26453 ENSMUSG00000039844.20 ENSMUSG00000039844 ENSMUST00000123953 Rapgef1 protein_coding Interval_53515 chr14 57998610 57999553 + 0 NA promoter-TSS (ENSMUSG00000097303.2) bidirectional_promoter_lncRNA-promoter-TSS (ENSMUSG00000097303.2) -303 ENSMUSG00000097303.2 ENSMUSG00000097303 ENSMUST00000224786 3110083C13Rik bidirectional_promoter_lncRNA Interval_93294 chr2 71735194 71735781 + 0 NA Intergenic Intergenic -2328 ENSMUSG00000087570.1 ENSMUSG00000087570 ENSMUST00000154654 Gm13647 lincRNA Interval_102936 chr3 32950968 32951557 + 0 NA intron (ENSMUSG00000027674.16, intron 14 of 14) protein_coding-intron (ENSMUSG00000027674.16, intron 14 of 14) -23414 ENSMUSG00000104283.1 ENSMUSG00000104283 ENSMUST00000195007 Gm37459 antisense Interval_44093 chr13 40851156 40852572 + 0 NA Intergenic Intergenic 5125 ENSMUSG00000114560.1 ENSMUSG00000114560 ENSMUST00000223759 Gm35160 unprocessed_pseudogene Interval_121305 chr4 154877410 154878325 + 0 NA intron (ENSMUSG00000058183.14, intron 1 of 21) protein_coding-intron (ENSMUSG00000058183.14, intron 2 of 23) -5864 ENSMUSG00000087437.7 ENSMUSG00000087437 ENSMUST00000151696 Gm13112 antisense Interval_86593 chr19 41938560 41938775 + 0 NA TTS (ENSMUSG00000025157.8) protein_coding-TTS (ENSMUSG00000025157.8) 999 ENSMUSG00000025157.8 ENSMUSG00000025157 ENSMUST00000223802 Zdhhc16 protein_coding Interval_131535 chr5 137838005 137838351 + 0 NA Intergenic Intergenic -1897 ENSMUSG00000046245.13 ENSMUSG00000046245 ENSMUST00000199028 Pilra protein_coding Interval_45116 chr13 52455224 52455579 + 0 NA Intergenic Intergenic 75878 ENSMUSG00000047842.7 ENSMUSG00000047842 ENSMUST00000057442 Diras2 protein_coding Interval_33766 chr11 118366049 118366243 + 0 NA Intergenic Intergenic -10406 ENSMUSG00000017466.9 ENSMUSG00000017466 ENSMUST00000155707 Timp2 protein_coding Interval_121927 chr5 9874156 9874411 + 0 NA Intergenic Intergenic -94391 ENSMUSG00000106661.1 ENSMUSG00000106661 ENSMUST00000196361 Gm42832 processed_pseudogene Interval_108605 chr3 129531924 129534450 + 0 NA promoter-TSS (ENSMUSG00000105837.4) antisense-promoter-TSS (ENSMUSG00000105837.4) -799 ENSMUSG00000105837.4 ENSMUSG00000105837 ENSMUST00000200419 Gm35986 antisense Interval_102704 chr3 30448449 30448908 + 0 NA intron (ENSMUSG00000027684.16, intron 2 of 8) protein_coding-intron (ENSMUSG00000027684.16, intron 1 of 11) -39748 ENSMUSG00000104079.1 ENSMUSG00000104079 ENSMUST00000192224 Gm37024 TEC Interval_97708 chr2 143062507 143063632 + 0 NA promoter-TSS (ENSMUSG00000008333.12) protein_coding-promoter-TSS (ENSMUSG00000008333.12) 8 ENSMUSG00000008333.12 ENSMUSG00000008333 ENSMUST00000134091 Snrpb2 protein_coding Interval_143762 chr7 16158687 16159393 + 0 NA exon (ENSMUSG00000030376.8, exon 9 of 9) protein_coding-exon (ENSMUSG00000030376.8, exon 9 of 9) -18706 ENSMUSG00000041420.18 ENSMUSG00000041420 ENSMUST00000176714 Meis3 protein_coding Interval_23717 chr11 25263136 25263343 + 0 NA intron (ENSMUSG00000033015.16, intron 1 of 1) lincRNA-intron (ENSMUSG00000033015.16, intron 1 of 1) -24524 ENSMUSG00000077669.1 ENSMUSG00000077669 ENSMUST00000104481 Gm24255 snoRNA Interval_43890 chr13 37876007 37876279 + 0 NA intron (ENSMUSG00000039087.17, intron 1 of 3) protein_coding-intron (ENSMUSG00000039087.17, intron 1 of 9) -70873 ENSMUSG00000039087.17 ENSMUSG00000039087 ENSMUST00000162849 Rreb1 protein_coding Interval_111941 chr4 32703816 32704038 + 0 NA promoter-TSS (ENSMUSG00000058006.12) protein_coding-promoter-TSS (ENSMUSG00000058006.12) 46808 ENSMUSG00000058006.12 ENSMUSG00000058006 ENSMUST00000124361 Mdn1 protein_coding Interval_169826 chr9 102240997 102241317 + 0 NA intron (ENSMUSG00000032537.15, intron 1 of 4) protein_coding-intron (ENSMUSG00000032537.15, intron 1 of 15) -32579 ENSMUSG00000102702.1 ENSMUSG00000102702 ENSMUST00000193748 Gm37260 TEC Interval_138326 chr6 87224439 87226490 + 0 NA intron (ENSMUSG00000033420.12, intron 5 of 6) protein_coding-intron (ENSMUSG00000033420.12, intron 12 of 17) 30144 ENSMUSG00000107865.1 ENSMUSG00000107865 ENSMUST00000203298 Gm44417 TEC Interval_94292 chr2 87547006 87547235 + 0 NA promoter-TSS (ENSMUSG00000082417.1) processed_pseudogene-promoter-TSS (ENSMUSG00000082417.1) 82 ENSMUSG00000082417.1 ENSMUSG00000082417 ENSMUST00000120590 Gm13740 processed_pseudogene Interval_34912 chr12 13336671 13339021 + 0 NA intron (ENSMUSG00000020576.10, intron 21 of 51) protein_coding-intron (ENSMUSG00000020576.10, intron 21 of 51) 87871 ENSMUSG00000113476.1 ENSMUSG00000113476 ENSMUST00000220829 Gm48309 TEC Interval_11872 chr1 186609606 186610611 + 0 NA Intergenic Intergenic -51427 ENSMUSG00000103690.1 ENSMUSG00000103690 ENSMUST00000195454 A730004F24Rik lincRNA Interval_107259 chr3 105024236 105024645 + 0 NA intron (ENSMUSG00000062127.11, intron 3 of 4) protein_coding-intron (ENSMUSG00000062127.11, intron 3 of 5) 28485 ENSMUSG00000062127.11 ENSMUSG00000062127 ENSMUST00000199002 Cttnbp2nl protein_coding Interval_5198 chr1 86421207 86422148 + 0 NA intron (ENSMUSG00000026237.6, intron 1 of 3) protein_coding-intron (ENSMUSG00000026237.6, intron 1 of 3) -4652 ENSMUSG00000036574.5 ENSMUSG00000036574 ENSMUST00000046004 Tex44 protein_coding Interval_40278 chr12 103069980 103070184 + 0 NA exon (ENSMUSG00000021198.16, exon 12 of 47) protein_coding-exon (ENSMUSG00000021198.16, exon 12 of 47) -41670 ENSMUSG00000113706.1 ENSMUSG00000113706 ENSMUST00000223546 Gm47201 processed_pseudogene Interval_80424 chr18 42073416 42074063 + 0 NA intron (ENSMUSG00000057719.11, intron 1 of 7) protein_coding-intron (ENSMUSG00000057719.11, intron 1 of 8) -69294 ENSMUSG00000057719.11 ENSMUSG00000057719 ENSMUST00000236947 Sh3rf2 protein_coding Interval_7280 chr1 128406846 128407724 + 0 NA intron (ENSMUSG00000026356.15, intron 3 of 15) protein_coding-intron (ENSMUSG00000026356.15, intron 3 of 15) -27798 ENSMUSG00000026356.15 ENSMUSG00000026356 ENSMUST00000064309 Dars protein_coding Interval_102819 chr3 31446215 31447249 + 0 NA Intergenic Intergenic 105720 ENSMUSG00000103998.1 ENSMUSG00000103998 ENSMUST00000193926 Gm38025 lincRNA Interval_62322 chr15 90148049 90150357 + 0 NA Intergenic Intergenic 74692 ENSMUSG00000116231.1 ENSMUSG00000116231 ENSMUST00000230688 Gm36330 lincRNA Interval_171420 chr9 118082090 118083255 + 0 NA intron (ENSMUSG00000039163.10, intron 2 of 3) protein_coding-intron (ENSMUSG00000039163.10, intron 2 of 3) 42056 ENSMUSG00000039285.12 ENSMUSG00000039285 ENSMUST00000123690 Azi2 protein_coding Interval_10048 chr1 165342048 165342638 + 0 NA intron (ENSMUSG00000026571.12, intron 3 of 6) protein_coding-intron (ENSMUSG00000026571.12, intron 14 of 18) -37176 ENSMUSG00000104427.1 ENSMUSG00000104427 ENSMUST00000193181 Gm38368 TEC Interval_168291 chr9 78456001 78458120 + 0 NA intron (ENSMUSG00000032342.13, intron 4 of 11) protein_coding-intron (ENSMUSG00000032342.13, intron 4 of 11) -7639 ENSMUSG00000032342.13 ENSMUSG00000032342 ENSMUST00000136478 Mto1 protein_coding Interval_165892 chr9 54323100 54324115 + 0 NA intron (ENSMUSG00000046167.5, intron 4 of 9) protein_coding-intron (ENSMUSG00000046167.5, intron 4 of 9) -22037 ENSMUSG00000074343.3 ENSMUSG00000074343 ENSMUST00000149237 Gldnos antisense Interval_45893 chr13 58904551 58905922 + 0 NA intron (ENSMUSG00000055254.15, intron 12 of 17) protein_coding-intron (ENSMUSG00000055254.15, intron 12 of 17) 69421 ENSMUSG00000055254.15 ENSMUSG00000055254 ENSMUST00000223636 Ntrk2 protein_coding Interval_138614 chr6 90450319 90450759 + 0 NA Intergenic Intergenic 10929 ENSMUSG00000107605.1 ENSMUSG00000107605 ENSMUST00000204442 Gm44117 lincRNA Interval_168829 chr9 87729396 87731621 + 0 NA promoter-TSS (ENSMUSG00000032419.8) protein_coding-promoter-TSS (ENSMUSG00000032419.8) -11 ENSMUSG00000032419.8 ENSMUSG00000032419 ENSMUST00000186698 Tbx18 protein_coding Interval_108020 chr3 120015311 120016499 + 0 NA Intergenic Intergenic 47174 ENSMUSG00000104726.1 ENSMUSG00000104726 ENSMUST00000195974 Gm18384 processed_pseudogene Interval_115199 chr4 94351543 94351809 + 0 NA intron (ENSMUSG00000085931.1, intron 1 of 5) lincRNA-intron (ENSMUSG00000085931.1, intron 1 of 5) -43982 ENSMUSG00000081508.1 ENSMUSG00000081508 ENSMUST00000120387 Gm12654 processed_pseudogene Interval_27159 chr11 63525578 63526263 + 0 NA Intergenic Intergenic 75003 ENSMUSG00000082256.1 ENSMUSG00000082256 ENSMUST00000119770 Gm12287 processed_pseudogene Interval_34038 chr11 120137701 120138113 + 0 NA TTS (ENSMUSG00000061306.16) protein_coding-TTS (ENSMUSG00000061306.16) -12655 ENSMUSG00000085636.1 ENSMUSG00000085636 ENSMUST00000140273 Gm11769 processed_transcript Interval_60475 chr15 74155850 74156069 + 0 NA Intergenic Intergenic -61626 ENSMUSG00000082585.3 ENSMUSG00000082585 ENSMUST00000120421 Gm15387 processed_pseudogene Interval_84144 chr19 7513565 7513831 + 0 NA intron (ENSMUSG00000024759.14, intron 3 of 12) protein_coding-intron (ENSMUSG00000024759.14, intron 3 of 12) 19503 ENSMUSG00000024759.14 ENSMUSG00000024759 ENSMUST00000236382 Atl3 protein_coding Interval_171863 chr9 121846373 121847228 + 0 NA exon (ENSMUSG00000111341.1, exon 1 of 1) TEC-exon (ENSMUSG00000111341.1, exon 1 of 1) 137 ENSMUSG00000111341.1 ENSMUSG00000111341 ENSMUST00000217162 Gm47111 TEC Interval_133062 chr5 149585920 149586211 + 0 NA intron (ENSMUSG00000029658.17, intron 14 of 22) protein_coding-intron (ENSMUSG00000029658.17, intron 14 of 22) -48035 ENSMUSG00000107132.1 ENSMUSG00000107132 ENSMUST00000202188 Gm15997 antisense Interval_96843 chr2 128842319 128843574 + 0 NA intron (ENSMUSG00000014353.15, intron 14 of 18) protein_coding-intron (ENSMUSG00000014353.15, intron 14 of 18) -20035 ENSMUSG00000027386.9 ENSMUSG00000027386 ENSMUST00000028864 Fbln7 protein_coding Interval_148355 chr7 80705722 80706468 + 0 NA Intergenic Intergenic -45727 ENSMUSG00000108321.1 ENSMUSG00000108321 ENSMUST00000205608 Gm44649 antisense Interval_1457 chr1 23705580 23705977 + 0 NA Intergenic Intergenic -55975 ENSMUSG00000026156.8 ENSMUSG00000026156 ENSMUST00000140583 B3gat2 protein_coding Interval_173132 chrX 73174553 73175238 + 0 NA TTS (ENSMUSG00000079566.1) protein_coding-TTS (ENSMUSG00000079566.1) 2094 ENSMUSG00000079566.1 ENSMUSG00000079566 ENSMUST00000114517 Spin2d protein_coding Interval_166759 chr9 62468974 62470848 + 0 NA intron (ENSMUSG00000041729.15, intron 2 of 3) protein_coding-intron (ENSMUSG00000041729.15, intron 2 of 11) -20763 ENSMUSG00000041729.15 ENSMUSG00000041729 ENSMUST00000123379 Coro2b protein_coding Interval_8663 chr1 146524015 146524383 + 0 NA intron (ENSMUSG00000035131.14, intron 2 of 7) protein_coding-intron (ENSMUSG00000035131.14, intron 2 of 7) 26512 ENSMUSG00000035131.14 ENSMUSG00000035131 ENSMUST00000125331 Brinp3 protein_coding Interval_94227 chr2 85560853 85561663 + 0 NA Intergenic Intergenic -17957 ENSMUSG00000111179.1 ENSMUSG00000111179 ENSMUST00000077075 Olfr996 protein_coding Interval_154379 chr8 15122221 15122551 + 0 NA exon (ENSMUSG00000031461.4, exon 29 of 37) protein_coding-exon (ENSMUSG00000031461.4, exon 29 of 37) 3379 ENSMUSG00000031461.4 ENSMUSG00000031461 ENSMUST00000140033 Myom2 protein_coding Interval_84283 chr19 9838283 9838521 + 0 NA Intergenic Intergenic -1505 ENSMUSG00000118383.1 ENSMUSG00000118383 ENSMUST00000236905 Gm50321 lincRNA Interval_62800 chr15 97066044 97066338 + 0 NA Intergenic Intergenic -46240 ENSMUSG00000022464.14 ENSMUSG00000022464 ENSMUST00000230907 Slc38a4 protein_coding Interval_75911 chr17 72948152 72948592 + 0 NA Intergenic Intergenic 27184 ENSMUSG00000024063.13 ENSMUSG00000024063 ENSMUST00000148556 Lbh protein_coding Interval_56530 chr14 120071278 120071505 + 0 NA Intergenic Intergenic -6119 ENSMUSG00000115133.1 ENSMUSG00000115133 ENSMUST00000226914 Gm20167 processed_pseudogene Interval_110718 chr4 6839536 6839888 + 0 NA intron (ENSMUSG00000041272.11, intron 2 of 2) protein_coding-intron (ENSMUSG00000041272.11, intron 2 of 8) 150771 ENSMUSG00000041272.11 ENSMUSG00000041272 ENSMUST00000150082 Tox protein_coding Interval_39810 chr12 98662705 98663493 + 0 NA promoter-TSS (ENSMUSG00000021007.14) protein_coding-promoter-TSS (ENSMUSG00000021007.14) -10618 ENSMUSG00000112990.1 ENSMUSG00000112990 ENSMUST00000221845 Gm47372 TEC Interval_35618 chr12 25783031 25783995 + 0 NA Intergenic Intergenic 37028 ENSMUSG00000114111.1 ENSMUSG00000114111 ENSMUST00000221179 Gm9321 processed_pseudogene Interval_119102 chr4 135569478 135570644 + 0 NA intron (ENSMUSG00000037188.7, intron 1 of 15) protein_coding-intron (ENSMUSG00000037188.7, intron 1 of 15) 3569 ENSMUSG00000037188.7 ENSMUSG00000037188 ENSMUST00000105855 Grhl3 protein_coding Interval_97323 chr2 134137291 134137704 + 0 NA Intergenic Intergenic 416810 ENSMUSG00000027261.2 ENSMUSG00000027261 ENSMUST00000140794 Hao1 protein_coding Interval_163374 chr9 21142174 21142878 + 0 NA exon (ENSMUSG00000019471.10, exon 3 of 8) protein_coding-exon (ENSMUSG00000019471.10, exon 3 of 8) 668 ENSMUSG00000019471.10 ENSMUSG00000019471 ENSMUST00000215866 Cdc37 protein_coding Interval_85877 chr19 32626791 32627400 + 0 NA intron (ENSMUSG00000024899.7, intron 1 of 11) protein_coding-intron (ENSMUSG00000024899.7, intron 1 of 12) 7090 ENSMUSG00000024899.7 ENSMUSG00000024899 ENSMUST00000025833 Papss2 protein_coding Interval_30563 chr11 95133098 95134552 + 0 NA Intergenic Intergenic -11227 ENSMUSG00000086552.3 ENSMUSG00000086552 ENSMUST00000156477 Dlx4os antisense Interval_13819 chr10 22975666 22976640 + 0 NA Intergenic Intergenic -19569 ENSMUSG00000112091.1 ENSMUSG00000112091 ENSMUST00000218257 Gm47787 processed_pseudogene Interval_161791 chr8 122817919 122818314 + 0 NA TTS (ENSMUSG00000015016.8) protein_coding-TTS (ENSMUSG00000015016.8) -7970 ENSMUSG00000110540.1 ENSMUSG00000110540 ENSMUST00000212701 Gm45743 TEC Interval_98248 chr2 150411722 150412807 + 0 NA promoter-TSS (ENSMUSG00000068130.11) protein_coding-promoter-TSS (ENSMUSG00000068130.11) -927 ENSMUSG00000068130.11 ENSMUSG00000068130 ENSMUST00000185796 Zfp442 protein_coding Interval_32470 chr11 107715998 107716976 + 0 NA promoter-TSS (ENSMUSG00000020722.5) protein_coding-promoter-TSS (ENSMUSG00000020722.5) 35 ENSMUSG00000020722.5 ENSMUSG00000020722 ENSMUST00000021065 Cacng1 protein_coding Interval_110084 chr3 153140190 153140403 + 0 NA Intergenic Intergenic 42519 ENSMUSG00000105337.4 ENSMUSG00000105337 ENSMUST00000197695 1700094M23Rik lincRNA Interval_77764 chr18 3345640 3345920 + 0 NA intron (ENSMUSG00000097746.2, intron 1 of 1) processed_transcript-intron (ENSMUSG00000097746.2, intron 1 of 1) -8191 ENSMUSG00000063889.16 ENSMUSG00000063889 ENSMUST00000132334 Crem protein_coding Interval_43786 chr13 36434147 36434346 + 0 NA intron (ENSMUSG00000021420.13, intron 6 of 7) protein_coding-intron (ENSMUSG00000021420.13, intron 6 of 6) 25034 ENSMUSG00000114714.1 ENSMUSG00000114714 ENSMUST00000224213 Gm48763 TEC Interval_135932 chr6 48860004 48861087 + 0 NA exon (ENSMUSG00000108084.1, exon 1 of 2) lincRNA-exon (ENSMUSG00000108084.1, exon 1 of 2) 216 ENSMUSG00000108084.1 ENSMUSG00000108084 ENSMUST00000101425 Gm7932 lincRNA Interval_36831 chr12 54492619 54493676 + 0 NA Intergenic Intergenic 23932 ENSMUSG00000113947.1 ENSMUSG00000113947 ENSMUST00000223133 Gm10465 lincRNA Interval_106462 chr3 96520165 96521067 + 0 NA Intergenic Intergenic -4556 ENSMUSG00000038403.10 ENSMUSG00000038403 ENSMUST00000049208 Hjv protein_coding Interval_26060 chr11 53843309 53843608 + 0 NA intron (ENSMUSG00000081769.9, intron 1 of 3) protein_coding-intron (ENSMUSG00000081769.9, intron 2 of 3) 6590 ENSMUSG00000081769.9 ENSMUSG00000081769 ENSMUST00000121435 Gm12216 protein_coding Interval_79831 chr18 35440518 35441409 + 0 NA intron (ENSMUSG00000024357.10, intron 1 of 2) protein_coding-intron (ENSMUSG00000024357.10, intron 1 of 9) -48141 ENSMUSG00000117731.1 ENSMUSG00000117731 ENSMUST00000237123 Gm50145 antisense Interval_173523 chrX 98419498 98420435 + 0 NA Intergenic Intergenic -63824 ENSMUSG00000082933.1 ENSMUSG00000082933 ENSMUST00000117070 Gm14811 processed_pseudogene Interval_83564 chr18 89681015 89681370 + 0 NA intron (ENSMUSG00000073514.4, intron 1 of 7) protein_coding-intron (ENSMUSG00000073514.4, intron 1 of 7) -51813 ENSMUSG00000092792.1 ENSMUSG00000092792 ENSMUST00000175051 Gm22694 miRNA Interval_11320 chr1 180941927 180943561 + 0 NA intron (ENSMUSG00000026519.16, intron 1 of 6) protein_coding-intron (ENSMUSG00000026519.16, intron 1 of 22) 286 ENSMUSG00000026519.16 ENSMUSG00000026519 ENSMUST00000161942 Tmem63a protein_coding Interval_117258 chr4 121052091 121053532 + 0 NA promoter-TSS (ENSMUSG00000028626.5) protein_coding-promoter-TSS (ENSMUSG00000028626.5) 13063 ENSMUSG00000028626.5 ENSMUSG00000028626 ENSMUST00000140119 Col9a2 protein_coding Interval_21363 chr10 128170963 128173513 + 0 NA intron (ENSMUSG00000040043.17, intron 2 of 14) protein_coding-intron (ENSMUSG00000040043.17, intron 1 of 12) 8059 ENSMUSG00000040043.17 ENSMUSG00000040043 ENSMUST00000218884 Rbms2 protein_coding Interval_97163 chr2 131902906 131903278 + 0 NA promoter-TSS (ENSMUSG00000081229.1) processed_pseudogene-promoter-TSS (ENSMUSG00000081229.1) -994 ENSMUSG00000081229.1 ENSMUSG00000081229 ENSMUST00000119759 Lamr1-ps1 processed_pseudogene Interval_15379 chr10 45217878 45218272 + 0 NA intron (ENSMUSG00000019848.14, intron 1 of 2) protein_coding-intron (ENSMUSG00000019848.14, intron 1 of 2) -29012 ENSMUSG00000098418.1 ENSMUSG00000098418 ENSMUST00000157398 Gm27723 snRNA Interval_103234 chr3 37271180 37271473 + 0 NA Intergenic Intergenic -14433 ENSMUSG00000094007.1 ENSMUSG00000094007 ENSMUST00000180244 Gm24169 miRNA Interval_174494 chrX 153453205 153454296 + 0 NA Intergenic Intergenic -44477 ENSMUSG00000050148.9 ENSMUSG00000050148 ENSMUST00000060714 Ubqln2 protein_coding Interval_68101 chr16 65064591 65065452 + 0 NA intron (ENSMUSG00000050783.5, intron 2 of 2) protein_coding-intron (ENSMUSG00000050783.5, intron 2 of 2) 40833 ENSMUSG00000050783.5 ENSMUSG00000050783 ENSMUST00000063076 Htr1f protein_coding Interval_65435 chr16 22324937 22325494 + 0 NA Intergenic Intergenic 29077 ENSMUSG00000116857.2 ENSMUSG00000116857 ENSMUST00000231661 Gm49582 unprocessed_pseudogene Interval_163334 chr9 20924134 20925740 + 0 NA intron (ENSMUSG00000004099.16, intron 16 of 38) protein_coding-intron (ENSMUSG00000004099.16, intron 16 of 38) -10773 ENSMUSG00000099147.1 ENSMUSG00000099147 ENSMUST00000184490 Mir7081 miRNA Interval_144689 chr7 27541584 27543088 + 0 NA TTS (ENSMUSG00000003363.15) protein_coding-TTS (ENSMUSG00000003363.15) -9590 ENSMUSG00000003363.15 ENSMUSG00000003363 ENSMUST00000143903 Pld3 protein_coding Interval_127990 chr5 110116794 110117003 + 0 NA intron (ENSMUSG00000023284.15, intron 2 of 4) protein_coding-intron (ENSMUSG00000023284.15, intron 1 of 3) 1951 ENSMUSG00000081865.1 ENSMUSG00000081865 ENSMUST00000118871 Gm15484 processed_pseudogene Interval_42968 chr13 21968934 21970464 + 0 NA Intergenic Intergenic -11495 ENSMUSG00000016982.6 ENSMUSG00000016982 ENSMUST00000017126 Pom121l2 protein_coding Interval_77638 chr17 93465997 93466190 + 0 NA Intergenic Intergenic -74395 ENSMUSG00000117368.1 ENSMUSG00000117368 ENSMUST00000234726 Gm50001 processed_pseudogene Interval_171451 chr9 118432428 118434195 + 0 NA intron (ENSMUSG00000111843.1, intron 1 of 4) lincRNA-intron (ENSMUSG00000111843.1, intron 1 of 4) 3475 ENSMUSG00000111843.1 ENSMUSG00000111843 ENSMUST00000213675 4933432G23Rik lincRNA Interval_172024 chr9 123619878 123620306 + 0 NA intron (ENSMUSG00000025243.15, intron 1 of 11) protein_coding-intron (ENSMUSG00000025243.15, intron 1 of 10) 8470 ENSMUSG00000025243.15 ENSMUSG00000025243 ENSMUST00000164241 Slc6a20b protein_coding Interval_3163 chr1 54327726 54328043 + 0 NA intron (ENSMUSG00000025983.11, intron 17 of 30) protein_coding-intron (ENSMUSG00000025983.11, intron 15 of 27) -2108 ENSMUSG00000025983.11 ENSMUSG00000025983 ENSMUST00000159682 Ccdc150 protein_coding Interval_50910 chr14 20721233 20721704 + 0 NA promoter-TSS (ENSMUSG00000021819.11) protein_coding-promoter-TSS (ENSMUSG00000021819.11) -143 ENSMUSG00000021819.11 ENSMUSG00000021819 ENSMUST00000225911 Zswim8 protein_coding Interval_142154 chr6 137659956 137661990 + 0 NA Intergenic Intergenic -67398 ENSMUSG00000107878.1 ENSMUSG00000107878 ENSMUST00000203153 Gm44106 TEC Interval_8997 chr1 152993846 152994148 + 0 NA intron (ENSMUSG00000042751.14, intron 2 of 8) protein_coding-intron (ENSMUSG00000042751.14, intron 1 of 10) -43900 ENSMUSG00000100702.1 ENSMUSG00000100702 ENSMUST00000187136 Gm8976 processed_pseudogene Interval_93860 chr2 77569608 77569801 + 0 NA intron (ENSMUSG00000027016.17, intron 3 of 3) protein_coding-intron (ENSMUSG00000027016.17, intron 1 of 7) 107035 ENSMUSG00000085845.7 ENSMUSG00000085845 ENSMUST00000126572 Gm13944 antisense Interval_125795 chr5 74208435 74208923 + 0 NA intron (ENSMUSG00000062110.14, intron 7 of 7) protein_coding-intron (ENSMUSG00000062110.14, intron 8 of 8) 10788 ENSMUSG00000049907.8 ENSMUSG00000049907 ENSMUST00000201837 Rasl11b protein_coding Interval_150060 chr7 105493803 105494293 + 0 NA Intergenic Intergenic -11748 ENSMUSG00000037060.3 ENSMUSG00000037060 ENSMUST00000047040 Cavin3 protein_coding Interval_52066 chr14 35026901 35027257 + 0 NA intron (ENSMUSG00000041078.7, intron 4 of 15) protein_coding-intron (ENSMUSG00000041078.7, intron 4 of 15) 132470 ENSMUSG00000065481.1 ENSMUSG00000065481 ENSMUST00000083547 Mir346 miRNA Interval_51133 chr14 24003547 24005394 + 0 NA promoter-TSS (ENSMUSG00000063142.15) protein_coding-promoter-TSS (ENSMUSG00000063142.15) -521 ENSMUSG00000114953.1 ENSMUSG00000114953 ENSMUST00000223837 4930519K11Rik bidirectional_promoter_lncRNA Interval_65860 chr16 29856717 29856967 + 0 NA Intergenic Intergenic -22114 ENSMUSG00000116891.1 ENSMUSG00000116891 ENSMUST00000232318 Gm32679 lincRNA Interval_31387 chr11 100374100 100374299 + 0 NA promoter-TSS (ENSMUSG00000001552.14) protein_coding-promoter-TSS (ENSMUSG00000001552.14) -12073 ENSMUSG00000091478.2 ENSMUSG00000091478 ENSMUST00000081241 Gm10039 processed_pseudogene Interval_23933 chr11 28552601 28552819 + 0 NA intron (ENSMUSG00000032878.16, intron 2 of 5) protein_coding-intron (ENSMUSG00000032878.16, intron 2 of 3) -118600 ENSMUSG00000032878.16 ENSMUSG00000032878 ENSMUST00000109501 Ccdc85a protein_coding Interval_20852 chr10 121509958 121510575 + 0 NA promoter-TSS (ENSMUSG00000112527.1) lincRNA-promoter-TSS (ENSMUSG00000112527.1) 3643 ENSMUSG00000112527.1 ENSMUSG00000112527 ENSMUST00000218852 Gm35696 lincRNA Interval_62973 chr15 98389752 98390451 + 0 NA Intergenic Intergenic 6094 ENSMUSG00000116514.1 ENSMUSG00000116514 ENSMUST00000230662 Gm49443 processed_pseudogene Interval_85570 chr19 28677526 28680400 + 0 NA promoter-TSS (ENSMUSG00000052942.13) protein_coding-promoter-TSS (ENSMUSG00000052942.13) 735 ENSMUSG00000097735.7 ENSMUSG00000097735 ENSMUST00000181625 D930032P07Rik lincRNA Interval_59789 chr15 59286190 59286654 + 0 NA intron (ENSMUSG00000115118.1, intron 1 of 3) lincRNA-intron (ENSMUSG00000115118.1, intron 1 of 3) 11026 ENSMUSG00000115118.1 ENSMUSG00000115118 ENSMUST00000227185 Gm36617 lincRNA Interval_148989 chr7 90856013 90856319 + 0 NA intron (ENSMUSG00000052572.19, intron 5 of 27) protein_coding-intron (ENSMUSG00000052572.19, intron 5 of 27) -15437 ENSMUSG00000109242.1 ENSMUSG00000109242 ENSMUST00000208672 A930002H02Rik TEC Interval_32590 chr11 108941664 108942324 + 0 NA promoter-TSS (ENSMUSG00000086268.1) antisense-promoter-TSS (ENSMUSG00000086268.1) 21 ENSMUSG00000086268.1 ENSMUSG00000086268 ENSMUST00000143435 Gm11670 antisense Interval_67725 chr16 56394862 56395090 + 0 NA Intergenic Intergenic -57598 ENSMUSG00000116998.1 ENSMUSG00000116998 ENSMUST00000231232 Gm21050 processed_pseudogene Interval_110462 chr3 158576426 158576892 + 0 NA Intergenic Intergenic -14525 ENSMUSG00000028176.13 ENSMUSG00000028176 ENSMUST00000198284 Lrrc7 protein_coding Interval_14921 chr10 41110714 41111274 + 0 NA intron (ENSMUSG00000111587.1, intron 4 of 4) lincRNA-intron (ENSMUSG00000111587.1, intron 4 of 4) 27202 ENSMUSG00000111587.1 ENSMUSG00000111587 ENSMUST00000214352 Gm32338 lincRNA Interval_36039 chr12 33553532 33554103 + 0 NA Intergenic Intergenic -56920 ENSMUSG00000112076.1 ENSMUSG00000112076 ENSMUST00000219348 Gm9368 processed_pseudogene Interval_1154 chr1 16183436 16184634 + 0 NA Intergenic Intergenic 26482 ENSMUSG00000104165.1 ENSMUSG00000104165 ENSMUST00000192560 Gm38249 TEC Interval_159969 chr8 105474116 105474615 + 0 NA intron (ENSMUSG00000039199.6, intron 10 of 13) protein_coding-intron (ENSMUSG00000039199.6, intron 7 of 10) -4955 ENSMUSG00000014846.12 ENSMUSG00000014846 ENSMUST00000176419 Tppp3 protein_coding Interval_125523 chr5 68049471 68049657 + 0 NA intron (ENSMUSG00000068082.12, intron 1 of 3) protein_coding-intron (ENSMUSG00000068082.12, intron 1 of 3) 17729 ENSMUSG00000068082.12 ENSMUSG00000068082 ENSMUST00000094715 Grxcr1 protein_coding Interval_70100 chr17 5316217 5317061 + 0 NA intron (ENSMUSG00000069729.14, intron 11 of 19) protein_coding-intron (ENSMUSG00000069729.14, intron 10 of 18) -72124 ENSMUSG00000101133.1 ENSMUSG00000101133 ENSMUST00000190732 Gm29050 antisense Interval_105043 chr3 80019029 80019548 + 0 NA Intergenic Intergenic -35604 ENSMUSG00000103181.1 ENSMUSG00000103181 ENSMUST00000194077 A330069K06Rik lincRNA Interval_137815 chr6 82727359 82727959 + 0 NA intron (ENSMUSG00000000628.10, intron 17 of 17) protein_coding-intron (ENSMUSG00000000628.10, intron 17 of 17) -22294 ENSMUSG00000030042.15 ENSMUSG00000030042 ENSMUST00000140281 Pole4 protein_coding Interval_93570 chr2 74510898 74511093 + 0 NA Intergenic Intergenic 44001 ENSMUSG00000009207.15 ENSMUSG00000009207 ENSMUST00000134168 Lnpk protein_coding Interval_139459 chr6 100315438 100316271 + 0 NA Intergenic Intergenic -29106 ENSMUSG00000072872.3 ENSMUSG00000072872 ENSMUST00000205164 Rybp protein_coding Interval_166069 chr9 56222342 56222571 + 0 NA intron (ENSMUSG00000074305.9, intron 3 of 3) protein_coding-intron (ENSMUSG00000074305.9, intron 6 of 6) 1315 ENSMUSG00000076281.1 ENSMUSG00000076281 ENSMUST00000102326 Gm24270 miRNA Interval_54985 chr14 76671303 76671568 + 0 NA Intergenic Intergenic -6219 ENSMUSG00000101009.6 ENSMUSG00000101009 ENSMUST00000191384 1700108F19Rik processed_transcript Interval_71766 chr17 25951143 25952605 + 0 NA exon (ENSMUSG00000097405.1, exon 1 of 7) antisense-exon (ENSMUSG00000097405.1, exon 1 of 7) 402 ENSMUSG00000097405.1 ENSMUSG00000097405 ENSMUST00000181174 D630044L22Rik antisense Interval_119348 chr4 137063715 137064471 + 0 NA Intergenic Intergenic 38409 ENSMUSG00000077624.1 ENSMUSG00000077624 ENSMUST00000104436 Gm23834 snoRNA Interval_119357 chr4 137125759 137126318 + 0 NA Intergenic Intergenic -7895 ENSMUSG00000087417.1 ENSMUSG00000087417 ENSMUST00000154285 Gm13001 lincRNA Interval_98172 chr2 149296530 149297465 + 0 NA Intergenic Intergenic 37792 ENSMUSG00000081314.1 ENSMUSG00000081314 ENSMUST00000117188 Gm14132 processed_pseudogene Interval_49680 chr13 113951478 113951679 + 0 NA intron (ENSMUSG00000042348.10, intron 4 of 5) protein_coding-intron (ENSMUSG00000042348.10, intron 3 of 4) 156985 ENSMUSG00000042348.10 ENSMUSG00000042348 ENSMUST00000224068 Arl15 protein_coding Interval_26814 chr11 60787271 60787716 + 0 NA TTS (ENSMUSG00000020534.14) protein_coding-TTS (ENSMUSG00000020534.14) 9969 ENSMUSG00000049323.8 ENSMUSG00000049323 ENSMUST00000056907 Smcr8 protein_coding Interval_160300 chr8 107871770 107872087 + 0 NA intron (ENSMUSG00000110625.1, intron 2 of 2) lincRNA-intron (ENSMUSG00000110625.1, intron 2 of 2) 2243 ENSMUSG00000110625.1 ENSMUSG00000110625 ENSMUST00000212462 5033426E14Rik lincRNA Interval_44496 chr13 45389142 45390516 + 0 NA promoter-TSS (ENSMUSG00000038175.10) protein_coding-promoter-TSS (ENSMUSG00000038175.10) -1098 ENSMUSG00000038175.10 ENSMUSG00000038175 ENSMUST00000222178 Mylip protein_coding Interval_8543 chr1 141246190 141246410 + 0 NA Intergenic Intergenic 10857 ENSMUSG00000095238.2 ENSMUSG00000095238 ENSMUST00000179202 Gm4845 processed_pseudogene Interval_49279 chr13 110127311 110128797 + 0 NA intron (ENSMUSG00000021700.10, intron 3 of 4) protein_coding-intron (ENSMUSG00000021700.10, intron 3 of 4) 152096 ENSMUSG00000021700.10 ENSMUSG00000021700 ENSMUST00000226040 Rab3c protein_coding Interval_76570 chr17 81244379 81245997 + 0 NA Intergenic Intergenic 1550 ENSMUSG00000117496.1 ENSMUSG00000117496 ENSMUST00000234904 Gm50042 processed_pseudogene Interval_150620 chr7 112865550 112866190 + 0 NA intron (ENSMUSG00000055320.18, intron 8 of 10) protein_coding-intron (ENSMUSG00000055320.18, intron 10 of 13) -88092 ENSMUSG00000098132.1 ENSMUSG00000098132 ENSMUST00000182858 Rassf10 protein_coding Interval_94098 chr2 83929455 83931088 + 0 NA intron (ENSMUSG00000034552.8, intron 3 of 7) protein_coding-intron (ENSMUSG00000034552.8, intron 3 of 8) -6592 ENSMUSG00000034552.8 ENSMUSG00000034552 ENSMUST00000155127 Zswim2 protein_coding Interval_61341 chr15 80948004 80948934 + 0 NA promoter-TSS (ENSMUSG00000022407.10) protein_coding-promoter-TSS (ENSMUSG00000022407.10) -48 ENSMUSG00000022407.10 ENSMUSG00000022407 ENSMUST00000199284 Adsl protein_coding Interval_160206 chr8 107116731 107117240 + 0 NA Intergenic Intergenic -2125 ENSMUSG00000102271.1 ENSMUSG00000102271 ENSMUST00000193420 C630050I24Rik TEC Interval_149335 chr7 97515360 97515743 + 0 NA intron (ENSMUSG00000025133.9, intron 12 of 22) protein_coding-intron (ENSMUSG00000025133.9, intron 12 of 22) -6257 ENSMUSG00000065360.1 ENSMUSG00000065360 ENSMUST00000083426 Gm24412 snoRNA Interval_47458 chr13 84626198 84626480 + 0 NA Intergenic Intergenic 64602 ENSMUSG00000098081.1 ENSMUSG00000098081 ENSMUST00000182391 Gm26913 processed_pseudogene Interval_168127 chr9 77386940 77387551 + 0 NA intron (ENSMUSG00000099170.1, intron 2 of 3) lincRNA-intron (ENSMUSG00000099170.1, intron 2 of 3) 12173 ENSMUSG00000099170.1 ENSMUSG00000099170 ENSMUST00000183878 5730403I07Rik lincRNA Interval_79787 chr18 35112938 35113774 + 0 NA Intergenic Intergenic -25733 ENSMUSG00000117727.1 ENSMUSG00000117727 ENSMUST00000238134 Gm3587 lincRNA Interval_26849 chr11 61043547 61044038 + 0 NA intron (ENSMUSG00000042529.14, intron 1 of 1) protein_coding-intron (ENSMUSG00000042529.14, intron 1 of 1) -22012 ENSMUSG00000042529.14 ENSMUSG00000042529 ENSMUST00000108717 Kcnj12 protein_coding Interval_69718 chr16 95764026 95764273 + 0 NA intron (ENSMUSG00000117232.1, intron 3 of 4) lincRNA-intron (ENSMUSG00000117232.1, intron 3 of 4) 4313 ENSMUSG00000104172.1 ENSMUSG00000104172 ENSMUST00000193903 Gm37259 TEC Interval_20902 chr10 121882272 121882751 + 0 NA intron (ENSMUSG00000020121.15, intron 4 of 21) protein_coding-intron (ENSMUSG00000020121.15, intron 4 of 21) -50453 ENSMUSG00000112596.1 ENSMUSG00000112596 ENSMUST00000218664 Gm48804 TEC Interval_137688 chr6 79395775 79396065 + 0 NA Intergenic Intergenic -145288 ENSMUSG00000107618.1 ENSMUSG00000107618 ENSMUST00000204707 Gm6261 processed_pseudogene Interval_155812 chr8 39052582 39052801 + 0 NA intron (ENSMUSG00000039530.17, intron 2 of 7) protein_coding-intron (ENSMUSG00000039530.17, intron 2 of 9) 46783 ENSMUSG00000039530.17 ENSMUSG00000039530 ENSMUST00000210890 Tusc3 protein_coding Interval_7796 chr1 133744454 133745444 + 0 NA intron (ENSMUSG00000026463.17, intron 1 of 19) protein_coding-intron (ENSMUSG00000026463.17, intron 1 of 20) -18304 ENSMUSG00000098606.1 ENSMUSG00000098606 ENSMUST00000183597 Mir6903 miRNA Interval_27176 chr11 63793379 63794390 + 0 NA Intergenic Intergenic 24416 ENSMUSG00000083142.1 ENSMUSG00000083142 ENSMUST00000121054 Gm12288 processed_pseudogene Interval_18106 chr10 82645755 82646485 + 0 NA promoter-TSS (ENSMUSG00000034674.18) protein_coding-promoter-TSS (ENSMUSG00000034674.18) 4679 ENSMUSG00000034674.18 ENSMUSG00000034674 ENSMUST00000142658 Tdg protein_coding Interval_139978 chr6 113154534 113155210 + 0 NA Intergenic Intergenic 39071 ENSMUSG00000042873.11 ENSMUSG00000042873 ENSMUST00000203665 Lhfpl4 protein_coding Interval_142412 chr6 141753285 141754212 + 0 NA intron (ENSMUSG00000084927.1, intron 4 of 13) protein_coding-intron (ENSMUSG00000084927.1, intron 4 of 13) 20062 ENSMUSG00000084927.1 ENSMUSG00000084927 ENSMUST00000148411 Gm5724 protein_coding Interval_132226 chr5 143434147 143435006 + 0 NA Intergenic Intergenic -3817 ENSMUSG00000105206.1 ENSMUSG00000105206 ENSMUST00000198525 Gm4870 processed_pseudogene Interval_149378 chr7 97842489 97843456 + 0 NA promoter-TSS (ENSMUSG00000030774.13) protein_coding-promoter-TSS (ENSMUSG00000030774.13) -50943 ENSMUSG00000030774.13 ENSMUSG00000030774 ENSMUST00000207017 Pak1 protein_coding Interval_160977 chr8 116621045 116621485 + 0 NA intron (ENSMUSG00000031758.10, intron 2 of 6) protein_coding-intron (ENSMUSG00000031758.10, intron 2 of 6) 111726 ENSMUSG00000031758.10 ENSMUSG00000031758 ENSMUST00000109102 Cdyl2 protein_coding Interval_69127 chr16 90820742 90821077 + 0 NA Intergenic Intergenic -5810 ENSMUSG00000039903.18 ENSMUSG00000039903 ENSMUST00000154180 Eva1c protein_coding Interval_90631 chr2 31579092 31579705 + 0 NA intron (ENSMUSG00000026843.15, intron 1 of 5) protein_coding-intron (ENSMUSG00000026843.15, intron 1 of 17) 6584 ENSMUSG00000026843.15 ENSMUSG00000026843 ENSMUST00000132534 Fubp3 protein_coding Interval_85507 chr19 27640863 27641670 + 0 NA Intergenic Intergenic 62741 ENSMUSG00000088266.1 ENSMUSG00000088266 ENSMUST00000157641 Gm24782 snoRNA Interval_50069 chr14 7791084 7792244 + 0 NA promoter-TSS (ENSMUSG00000072723.12) transcribed_unprocessed_pseudogene-promoter-TSS (ENSMUSG00000072723.12) -12 ENSMUSG00000072723.12 ENSMUSG00000072723 ENSMUST00000238229 Gm10044 transcribed_unprocessed_pseudogene Interval_26617 chr11 59256128 59256590 + 0 NA exon (ENSMUSG00000009900.7, exon 3 of 4) protein_coding-exon (ENSMUSG00000009900.7, exon 3 of 4) -28197 ENSMUSG00000048076.14 ENSMUSG00000048076 ENSMUST00000061242 Arf1 protein_coding Interval_82262 chr18 69749049 69750043 + 0 NA Intergenic Intergenic 28499 ENSMUSG00000064706.1 ENSMUSG00000064706 ENSMUST00000082772 Gm22508 misc_RNA Interval_131997 chr5 142016734 142018008 + 0 NA intron (ENSMUSG00000039683.16, intron 17 of 44) protein_coding-intron (ENSMUSG00000039683.16, intron 13 of 40) -265735 ENSMUSG00000097947.1 ENSMUSG00000097947 ENSMUST00000182990 Gm26970 processed_pseudogene Interval_43298 chr13 28870058 28870454 + 0 NA intron (ENSMUSG00000085936.7, intron 2 of 7) processed_transcript-intron (ENSMUSG00000085936.7, intron 1 of 5) 27689 ENSMUSG00000113352.1 ENSMUSG00000113352 ENSMUST00000223473 Gm34639 lincRNA Interval_148258 chr7 80140932 80141326 + 0 NA Intergenic Intergenic -14040 ENSMUSG00000108757.1 ENSMUSG00000108757 ENSMUST00000205955 Gm45202 lincRNA Interval_117071 chr4 119361601 119362468 + 0 NA intron (ENSMUSG00000028637.16, intron 1 of 4) protein_coding-intron (ENSMUSG00000028637.16, intron 3 of 6) 11719 ENSMUSG00000028637.16 ENSMUSG00000028637 ENSMUST00000238559 Ccdc30 protein_coding Interval_56383 chr14 118304744 118305081 + 0 NA Intergenic Intergenic 4922 ENSMUSG00000088095.1 ENSMUSG00000088095 ENSMUST00000157470 Gm23669 snoRNA Interval_94057 chr2 83041011 83041916 + 0 NA Intergenic Intergenic 84753 ENSMUSG00000102082.1 ENSMUSG00000102082 ENSMUST00000191096 Gm28675 lincRNA Interval_155781 chr8 37538470 37538768 + 0 NA intron (ENSMUSG00000039539.13, intron 8 of 9) protein_coding-intron (ENSMUSG00000039539.13, intron 6 of 7) -137599 ENSMUSG00000109820.1 ENSMUSG00000109820 ENSMUST00000210980 Gm45654 processed_pseudogene Interval_5270 chr1 87153611 87156551 + 0 NA promoter-TSS (ENSMUSG00000026247.13) protein_coding-promoter-TSS (ENSMUSG00000026247.13) -6165 ENSMUSG00000026247.13 ENSMUSG00000026247 ENSMUST00000159662 Ecel1 protein_coding Interval_128201 chr5 111669189 111670030 + 0 NA Intergenic Intergenic -64315 ENSMUSG00000096949.1 ENSMUSG00000096949 ENSMUST00000180627 Gm26897 protein_coding Interval_53530 chr14 58504061 58504266 + 0 NA Intergenic Intergenic 146237 ENSMUSG00000077201.1 ENSMUSG00000077201 ENSMUST00000104013 Gm25614 snoRNA Interval_93346 chr2 72136631 72137756 + 0 NA intron (ENSMUSG00000085439.1, intron 1 of 3) protein_coding-intron (ENSMUSG00000049044.16, intron 1 of 27) 11603 ENSMUSG00000085439.1 ENSMUSG00000085439 ENSMUST00000126462 Rapgef4os1 antisense Interval_10528 chr1 171487837 171488066 + 0 NA Intergenic Intergenic 15212 ENSMUSG00000094668.1 ENSMUSG00000094668 ENSMUST00000083099 Gm24871 snRNA Interval_66063 chr16 31358796 31360561 + 0 NA Intergenic Intergenic 15531 ENSMUSG00000115997.1 ENSMUSG00000115997 ENSMUST00000229414 Gm49404 processed_pseudogene Interval_119935 chr4 141014869 141015210 + 0 NA TTS (ENSMUSG00000060572.17) protein_coding-TTS (ENSMUSG00000060572.17) 4621 ENSMUSG00000060572.17 ENSMUSG00000060572 ENSMUST00000071977 Mfap2 protein_coding Interval_139683 chr6 106876561 106876944 + 0 NA Intergenic Intergenic -76675 ENSMUSG00000005362.14 ENSMUSG00000005362 ENSMUST00000204230 Crbn protein_coding Interval_40775 chr12 108292313 108293438 + 0 NA Intergenic Intergenic -13673 ENSMUSG00000021260.8 ENSMUSG00000021260 ENSMUST00000223395 Hhipl1 protein_coding Interval_5823 chr1 92223940 92225115 + 0 NA Intergenic Intergenic -28833 ENSMUSG00000026313.16 ENSMUSG00000026313 ENSMUST00000212408 Hdac4 protein_coding Interval_4530 chr1 74816260 74817483 + 0 NA Intergenic Intergenic 23508 ENSMUSG00000026167.14 ENSMUSG00000026167 ENSMUST00000187238 Wnt10a protein_coding Interval_30944 chr11 97336131 97337558 + 0 NA exon (ENSMUSG00000070337.4, exon 11 of 11) protein_coding-exon (ENSMUSG00000070337.4, exon 11 of 11) -14355 ENSMUSG00000081958.1 ENSMUSG00000081958 ENSMUST00000122313 Gm11594 processed_pseudogene Interval_4565 chr1 75132439 75132740 + 0 NA intron (ENSMUSG00000026205.8, intron 3 of 4) protein_coding-intron (ENSMUSG00000026205.8, intron 5 of 11) 957 ENSMUSG00000026205.8 ENSMUSG00000026205 ENSMUST00000188080 Slc23a3 protein_coding Interval_31438 chr11 100656148 100657788 + 0 NA intron (ENSMUSG00000014198.15, intron 2 of 2) protein_coding-intron (ENSMUSG00000014198.15, intron 1 of 4) -13851 ENSMUSG00000109112.1 ENSMUSG00000109112 ENSMUST00000207052 Gm44544 unitary_pseudogene Interval_155096 chr8 26447779 26448716 + 0 NA Intergenic Intergenic 9418 ENSMUSG00000110383.1 ENSMUSG00000110383 ENSMUST00000210430 Gm45580 lincRNA Interval_88382 chr2 4593035 4594035 + 0 NA intron (ENSMUSG00000026657.17, intron 5 of 5) protein_coding-intron (ENSMUSG00000026657.17, intron 16 of 23) -6248 ENSMUSG00000086018.7 ENSMUSG00000086018 ENSMUST00000137801 Gm13179 antisense Interval_70510 chr17 11298480 11299337 + 0 NA intron (ENSMUSG00000023826.16, intron 2 of 5) protein_coding-intron (ENSMUSG00000023826.16, intron 3 of 6) -12143 ENSMUSG00000104527.1 ENSMUSG00000104527 ENSMUST00000195853 Gm37332 TEC Interval_42054 chr13 6970942 6971216 + 0 NA Intergenic Intergenic -45228 ENSMUSG00000113932.1 ENSMUSG00000113932 ENSMUST00000220700 2900024D18Rik TEC Interval_120473 chr4 148843739 148844230 + 0 NA intron (ENSMUSG00000028977.17, intron 2 of 20) protein_coding-intron (ENSMUSG00000028977.17, intron 2 of 15) 70340 ENSMUSG00000086766.1 ENSMUSG00000086766 ENSMUST00000151967 Gm15969 antisense Interval_55901 chr14 101908968 101909532 + 0 NA intron (ENSMUSG00000033060.16, intron 9 of 10) protein_coding-intron (ENSMUSG00000033060.16, intron 15 of 30) 68743 ENSMUSG00000033060.16 ENSMUSG00000033060 ENSMUST00000160038 Lmo7 protein_coding Interval_6303 chr1 105728986 105729685 + 0 NA intron (ENSMUSG00000026319.13, intron 19 of 21) protein_coding-intron (ENSMUSG00000026319.13, intron 19 of 28) 20762 ENSMUSG00000104044.1 ENSMUSG00000104044 ENSMUST00000192363 Gm37566 TEC Interval_131525 chr5 137740745 137742253 + 0 NA promoter-TSS (ENSMUSG00000045348.16) protein_coding-promoter-TSS (ENSMUSG00000045348.16) -1781 ENSMUSG00000045348.16 ENSMUSG00000045348 ENSMUST00000149512 Nyap1 protein_coding Interval_107310 chr3 105696983 105697283 + 0 NA Intergenic Intergenic -8325 ENSMUSG00000048458.8 ENSMUSG00000048458 ENSMUST00000098273 Inka2 protein_coding Interval_4251 chr1 72182730 72183970 + 0 NA intron (ENSMUSG00000039395.8, intron 2 of 4) protein_coding-intron (ENSMUSG00000039395.8, intron 2 of 4) 28957 ENSMUSG00000039395.8 ENSMUSG00000039395 ENSMUST00000048860 Mreg protein_coding Interval_119071 chr4 135352534 135354206 + 0 NA promoter-TSS (ENSMUSG00000028809.16) protein_coding-promoter-TSS (ENSMUSG00000028809.16) -21137 ENSMUSG00000028809.16 ENSMUSG00000028809 ENSMUST00000134019 Srrm1 protein_coding Interval_62305 chr15 89583754 89584333 + 0 NA exon (ENSMUSG00000022621.16, exon 6 of 7) protein_coding-exon (ENSMUSG00000022621.16, exon 6 of 7) 499 ENSMUSG00000022621.16 ENSMUSG00000022621 ENSMUST00000171142 Rabl2 protein_coding Interval_159071 chr8 89453927 89454657 + 0 NA Intergenic Intergenic 135249 ENSMUSG00000064758.1 ENSMUSG00000064758 ENSMUST00000082824 Gm26331 snRNA Interval_122974 chr5 28092504 28092969 + 0 NA Intergenic Intergenic 18070 ENSMUSG00000045294.11 ENSMUSG00000045294 ENSMUST00000199728 Insig1 protein_coding Interval_85865 chr19 32512164 32512751 + 0 NA intron (ENSMUSG00000024896.9, intron 4 of 4) protein_coding-intron (ENSMUSG00000024896.9, intron 4 of 4) 26534 ENSMUSG00000024896.9 ENSMUSG00000024896 ENSMUST00000236287 Minpp1 protein_coding Interval_138085 chr6 85050962 85051860 + 0 NA intron (ENSMUSG00000033769.16, intron 1 of 2) protein_coding-intron (ENSMUSG00000033769.16, intron 1 of 16) -11163 ENSMUSG00000107629.1 ENSMUSG00000107629 ENSMUST00000203336 Gm44011 processed_pseudogene Interval_110660 chr4 5784229 5784481 + 0 NA intron (ENSMUSG00000049119.14, intron 1 of 1) protein_coding-intron (ENSMUSG00000049119.14, intron 2 of 2) 11476 ENSMUSG00000049119.14 ENSMUSG00000049119 ENSMUST00000145365 Fam110b protein_coding Interval_1347 chr1 20848327 20848589 + 0 NA Intergenic Intergenic -5792 ENSMUSG00000088858.1 ENSMUSG00000088858 ENSMUST00000158233 Gm24723 snoRNA Interval_117429 chr4 123637341 123638346 + 0 NA intron (ENSMUSG00000028649.21, intron 1 of 97) protein_coding-intron (ENSMUSG00000028649.21, intron 1 of 92) 7548 ENSMUSG00000081585.1 ENSMUSG00000081585 ENSMUST00000121158 Gm12926 processed_pseudogene Interval_19776 chr10 108699481 108700244 + 0 NA exon (ENSMUSG00000112039.1, exon 1 of 1) protein_coding-exon (ENSMUSG00000112039.1, exon 1 of 1) 298 ENSMUSG00000112039.1 ENSMUSG00000112039 ENSMUST00000218023 Gm5136 protein_coding Interval_70897 chr17 15723660 15723895 + 0 NA intron (ENSMUSG00000023852.14, intron 2 of 22) protein_coding-intron (ENSMUSG00000023852.14, intron 2 of 35) -14758 ENSMUSG00000023852.14 ENSMUSG00000023852 ENSMUST00000173040 Chd1 protein_coding Interval_25212 chr11 45431743 45432172 + 0 NA Intergenic Intergenic -11173 ENSMUSG00000085476.1 ENSMUSG00000085476 ENSMUST00000123422 Gm12162 lincRNA Interval_153667 chr8 4392458 4392798 + 0 NA TTS (ENSMUSG00000109241.1) processed_pseudogene-TTS (ENSMUSG00000109241.1) 902 ENSMUSG00000109241.1 ENSMUSG00000109241 ENSMUST00000208558 Gm7434 processed_pseudogene Interval_69115 chr16 90760650 90760929 + 0 NA intron (ENSMUSG00000039929.14, intron 32 of 38) protein_coding-intron (ENSMUSG00000039929.14, intron 32 of 38) 22465 ENSMUSG00000039956.9 ENSMUSG00000039956 ENSMUST00000038197 Mrap protein_coding Interval_122096 chr5 16940677 16941087 + 0 NA Intergenic Intergenic -40154 ENSMUSG00000105706.1 ENSMUSG00000105706 ENSMUST00000197388 Gm42855 processed_pseudogene Interval_171520 chr9 119002217 119003058 + 0 NA intron (ENSMUSG00000047409.13, intron 1 of 5) protein_coding-intron (ENSMUSG00000047409.13, intron 1 of 7) -29159 ENSMUSG00000065513.1 ENSMUSG00000065513 ENSMUST00000083579 Mir26a-1 miRNA Interval_11620 chr1 183378265 183380514 + 0 NA Intergenic Intergenic 8313 ENSMUSG00000103415.1 ENSMUSG00000103415 ENSMUST00000194142 Gm37339 processed_pseudogene Interval_45562 chr13 55870653 55870852 + 0 NA intron (ENSMUSG00000114493.2, intron 2 of 5) antisense-intron (ENSMUSG00000114493.2, intron 2 of 5) -34560 ENSMUSG00000021506.7 ENSMUSG00000021506 ENSMUST00000173618 Pitx1 protein_coding Interval_104008 chr3 57182607 57183002 + 0 NA Intergenic Intergenic -45973 ENSMUSG00000097366.1 ENSMUSG00000097366 ENSMUST00000181591 Gm8177 processed_pseudogene Interval_24903 chr11 41041715 41041964 + 0 NA Intergenic Intergenic -6716 ENSMUSG00000065916.1 ENSMUSG00000065916 ENSMUST00000083982 Gm24446 snRNA Interval_49945 chr13 118605656 118605873 + 0 NA intron (ENSMUSG00000114613.1, intron 5 of 6) lincRNA-intron (ENSMUSG00000114613.1, intron 5 of 6) -6846 ENSMUSG00000114831.1 ENSMUSG00000114831 ENSMUST00000224199 Gm18361 processed_pseudogene Interval_25790 chr11 51733063 51734931 + 0 NA intron (ENSMUSG00000036391.16, intron 4 of 7) protein_coding-intron (ENSMUSG00000036391.16, intron 4 of 22) 3925 ENSMUSG00000084744.1 ENSMUSG00000084744 ENSMUST00000122795 Gm25291 snoRNA Interval_64710 chr16 14379206 14381006 + 0 NA intron (ENSMUSG00000023088.17, intron 1 of 2) protein_coding-intron (ENSMUSG00000023088.17, intron 1 of 30) -2701 ENSMUSG00000089106.1 ENSMUSG00000089106 ENSMUST00000158481 Gm23116 snRNA Interval_65203 chr16 20496746 20499641 + 0 NA promoter-TSS (ENSMUSG00000003235.13) protein_coding-promoter-TSS (ENSMUSG00000003235.13) -6570 ENSMUSG00000003235.13 ENSMUSG00000003235 ENSMUST00000148714 Eif2b5 protein_coding Interval_172868 chrX 52373252 52374987 + 0 NA intron (ENSMUSG00000055653.13, intron 5 of 7) protein_coding-intron (ENSMUSG00000055653.13, intron 5 of 7) 4062 ENSMUSG00000105738.1 ENSMUSG00000105738 ENSMUST00000196833 Mir6384 miRNA Interval_8567 chr1 142848088 142848279 + 0 NA Intergenic Intergenic 92990 ENSMUSG00000102818.1 ENSMUSG00000102818 ENSMUST00000195327 Gm37796 TEC Interval_33976 chr11 119786311 119786607 + 0 NA intron (ENSMUSG00000025583.15, intron 7 of 32) protein_coding-intron (ENSMUSG00000025583.15, intron 7 of 33) 40058 ENSMUSG00000088670.1 ENSMUSG00000088670 ENSMUST00000158045 Gm23663 snoRNA Interval_150465 chr7 110897362 110897699 + 0 NA intron (ENSMUSG00000005611.15, intron 9 of 15) protein_coding-intron (ENSMUSG00000005611.15, intron 14 of 20) -7455 ENSMUSG00000087160.1 ENSMUSG00000087160 ENSMUST00000126011 Gm16336 antisense Interval_120634 chr4 149806556 149807439 + 0 NA Intergenic Intergenic 8225 ENSMUSG00000083173.1 ENSMUSG00000083173 ENSMUST00000119125 Gm13064 processed_pseudogene Interval_18161 chr10 83098257 83099269 + 0 NA intron (ENSMUSG00000034612.7, intron 2 of 2) protein_coding-intron (ENSMUSG00000034612.7, intron 2 of 2) 43275 ENSMUSG00000090200.1 ENSMUSG00000090200 ENSMUST00000160997 1700025N21Rik antisense Interval_100131 chr2 167234979 167236014 + 0 NA intron (ENSMUSG00000017969.13, intron 1 of 9) protein_coding-intron (ENSMUSG00000017969.13, intron 1 of 9) -27080 ENSMUSG00000017969.13 ENSMUSG00000017969 ENSMUST00000136271 Ptgis protein_coding Interval_161056 chr8 117203606 117205008 + 0 NA exon (ENSMUSG00000052557.11, exon 11 of 11) protein_coding-exon (ENSMUSG00000052557.11, exon 11 of 11) 46170 ENSMUSG00000052557.11 ENSMUSG00000052557 ENSMUST00000162997 Gan protein_coding Interval_48336 chr13 98290727 98291035 + 0 NA intron (ENSMUSG00000096330.8, intron 2 of 5) protein_coding-intron (ENSMUSG00000096330.8, intron 3 of 3) -11623 ENSMUSG00000096330.8 ENSMUSG00000096330 ENSMUST00000186911 Gm21976 protein_coding Interval_117010 chr4 118994459 118994979 + 0 NA intron (ENSMUSG00000087238.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000087238.1, intron 1 of 1) 2479 ENSMUSG00000087238.1 ENSMUSG00000087238 ENSMUST00000137353 Gm12865 lincRNA Interval_4241 chr1 72103069 72103525 + 0 NA Intergenic Intergenic 15440 ENSMUSG00000101496.1 ENSMUSG00000101496 ENSMUST00000189382 Gm8885 processed_pseudogene Interval_15095 chr10 42540233 42540813 + 0 NA Intergenic Intergenic 38493 ENSMUSG00000019804.12 ENSMUSG00000019804 ENSMUST00000105499 Snx3 protein_coding Interval_75034 chr17 61786027 61786233 + 0 NA Intergenic Intergenic 4447 ENSMUSG00000098156.1 ENSMUSG00000098156 ENSMUST00000182372 Gm27023 processed_pseudogene Interval_166213 chr9 57541553 57541758 + 0 NA exon (ENSMUSG00000032305.15, exon 4 of 4) protein_coding-exon (ENSMUSG00000032305.15, exon 4 of 4) -4026 ENSMUSG00000097445.1 ENSMUSG00000097445 ENSMUST00000181462 Gm26631 bidirectional_promoter_lncRNA Interval_9095 chr1 153558750 153561357 + 0 NA Intergenic Intergenic -10342 ENSMUSG00000042684.8 ENSMUSG00000042684 ENSMUST00000187747 Npl protein_coding Interval_80083 chr18 37413176 37414165 + 0 NA exon (ENSMUSG00000045657.3, exon 1 of 1) protein_coding-exon (ENSMUSG00000045657.3, exon 1 of 1) 2006 ENSMUSG00000045657.3 ENSMUSG00000045657 ENSMUST00000051126 Pcdhb10 protein_coding Interval_2720 chr1 43882183 43883154 + 0 NA Intergenic Intergenic -5383 ENSMUSG00000100701.1 ENSMUSG00000100701 ENSMUST00000191395 Gm19587 processed_pseudogene Interval_136431 chr6 54401127 54401321 + 0 NA intron (ENSMUSG00000073067.10, intron 2 of 13) processed_transcript-intron (ENSMUSG00000073067.10, intron 2 of 13) -51659 ENSMUSG00000086040.8 ENSMUSG00000086040 ENSMUST00000131043 Wipf3 protein_coding Interval_33366 chr11 116142117 116143135 + 0 NA TTS (ENSMUSG00000020776.18) protein_coding-TTS (ENSMUSG00000020776.18) -8170 ENSMUSG00000020775.13 ENSMUSG00000020775 ENSMUST00000138457 Mrpl38 protein_coding Interval_164284 chr9 34995034 34996237 + 0 NA intron (ENSMUSG00000032036.15, intron 5 of 13) protein_coding-intron (ENSMUSG00000032036.15, intron 6 of 16) 35616 ENSMUSG00000089465.1 ENSMUSG00000089465 ENSMUST00000158840 Gm23702 rRNA Interval_51577 chr14 30459809 30460576 + 0 NA intron (ENSMUSG00000015968.18, intron 1 of 1) protein_coding-intron (ENSMUSG00000015968.18, intron 1 of 46) 36922 ENSMUSG00000114966.1 ENSMUSG00000114966 ENSMUST00000224520 Gm18681 processed_pseudogene Interval_127851 chr5 108240492 108240875 + 0 NA Intergenic Intergenic -29249 ENSMUSG00000105591.1 ENSMUSG00000105591 ENSMUST00000199594 Gm43083 processed_pseudogene Interval_150345 chr7 109751667 109752991 + 0 NA promoter-TSS (ENSMUSG00000031021.13) protein_coding-promoter-TSS (ENSMUSG00000031021.13) 9 ENSMUSG00000109147.1 ENSMUSG00000109147 ENSMUST00000207570 4930431P19Rik transcribed_processed_pseudogene Interval_48763 chr13 102896116 102896485 + 0 NA intron (ENSMUSG00000034751.17, intron 3 of 27) protein_coding-intron (ENSMUSG00000034751.17, intron 2 of 27) 133865 ENSMUSG00000090329.1 ENSMUSG00000090329 ENSMUST00000170645 Gm17160 antisense Interval_71023 chr17 17250377 17250862 + 0 NA intron (ENSMUSG00000116802.1, intron 1 of 3) lincRNA-intron (ENSMUSG00000116802.1, intron 1 of 3) -11731 ENSMUSG00000116802.1 ENSMUSG00000116802 ENSMUST00000231376 Gm5165 lincRNA Interval_120182 chr4 143600738 143601009 + 0 NA Intergenic Intergenic -3262 ENSMUSG00000081523.1 ENSMUSG00000081523 ENSMUST00000117097 Gm13058 unprocessed_pseudogene Interval_171062 chr9 114064207 114064413 + 0 NA intron (ENSMUSG00000086596.2, intron 2 of 4) protein_coding-intron (ENSMUSG00000086596.2, intron 2 of 4) 7170 ENSMUSG00000086596.2 ENSMUSG00000086596 ENSMUST00000135338 Susd5 protein_coding Interval_9024 chr1 153140763 153142052 + 0 NA intron (ENSMUSG00000026479.13, intron 11 of 22) protein_coding-intron (ENSMUSG00000026479.13, intron 12 of 23) -14173 ENSMUSG00000026479.13 ENSMUSG00000026479 ENSMUST00000188831 Lamc2 protein_coding Interval_33211 chr11 115247332 115247638 + 0 NA TTS (ENSMUSG00000045980.13) protein_coding-TTS (ENSMUSG00000045980.13) -5793 ENSMUSG00000089544.1 ENSMUSG00000089544 ENSMUST00000158919 Gm25837 miRNA Interval_1398 chr1 21324155 21324973 + 0 NA Intergenic Intergenic -8244 ENSMUSG00000093963.1 ENSMUSG00000093963 ENSMUST00000178260 Gm21909 unprocessed_pseudogene Interval_156119 chr8 44948890 44949216 + 0 NA intron (ENSMUSG00000070047.14, intron 1 of 26) protein_coding-intron (ENSMUSG00000070047.14, intron 1 of 26) -1161 ENSMUSG00000070047.14 ENSMUSG00000070047 ENSMUST00000189367 Fat1 protein_coding Interval_95777 chr2 116093333 116094000 + 0 NA Intergenic Intergenic -17570 ENSMUSG00000103562.1 ENSMUSG00000103562 ENSMUST00000195368 2810405F15Rik TEC Interval_42734 chr13 18717028 18717921 + 0 NA intron (ENSMUSG00000041236.8, intron 1 of 4) protein_coding-intron (ENSMUSG00000041236.8, intron 1 of 28) -62369 ENSMUSG00000041236.8 ENSMUSG00000041236 ENSMUST00000222102 Vps41 protein_coding Interval_148790 chr7 87520744 87521199 + 0 NA Intergenic Intergenic -27579 ENSMUSG00000004651.6 ENSMUSG00000004651 ENSMUST00000207834 Tyr protein_coding Interval_105896 chr3 89962624 89964602 + 0 NA promoter-TSS (ENSMUSG00000060671.12) protein_coding-promoter-TSS (ENSMUSG00000060671.12) 4550 ENSMUSG00000065045.1 ENSMUSG00000065045 ENSMUST00000083111 Gm24046 snRNA Interval_85932 chr19 33456105 33457006 + 0 NA Intergenic Intergenic -8757 ENSMUSG00000118289.1 ENSMUSG00000118289 ENSMUST00000236869 Gm19724 processed_pseudogene Interval_160979 chr8 116629769 116631028 + 0 NA intron (ENSMUSG00000031758.10, intron 1 of 6) protein_coding-intron (ENSMUSG00000031758.10, intron 1 of 6) 102593 ENSMUSG00000031758.10 ENSMUSG00000031758 ENSMUST00000109102 Cdyl2 protein_coding Interval_168290 chr9 78447890 78449235 + 0 NA exon (ENSMUSG00000090317.1, exon 1 of 1) antisense-exon (ENSMUSG00000090317.1, exon 1 of 1) 224 ENSMUSG00000090317.1 ENSMUSG00000090317 ENSMUST00000165499 Gm17324 antisense Interval_59920 chr15 61983236 61983540 + 0 NA promoter-TSS (ENSMUSG00000103610.1) TEC-promoter-TSS (ENSMUSG00000103610.1) -86 ENSMUSG00000103610.1 ENSMUSG00000103610 ENSMUST00000192740 Gm37947 TEC Interval_143488 chr7 10022404 10022885 + 0 NA Intergenic Intergenic -30387 ENSMUSG00000096180.2 ENSMUSG00000096180 ENSMUST00000108550 Vmn2r49 protein_coding Interval_10755 chr1 174306711 174307087 + 0 NA Intergenic Intergenic -23619 ENSMUSG00000026531.4 ENSMUSG00000026531 ENSMUST00000027816 Mptx1 protein_coding Interval_574 chr1 7630678 7630992 + 0 NA Intergenic Intergenic -33246 ENSMUSG00000103903.1 ENSMUSG00000103903 ENSMUST00000194305 Rps2-ps2 processed_pseudogene Interval_99042 chr2 156818121 156818519 + 0 NA Intergenic Intergenic 21572 ENSMUSG00000087179.8 ENSMUSG00000087179 ENSMUST00000134838 Gm14230 lincRNA Interval_122910 chr5 27255564 27256853 + 0 NA intron (ENSMUSG00000061576.15, intron 1 of 25) protein_coding-intron (ENSMUSG00000061576.15, intron 1 of 25) 38023 ENSMUSG00000106537.1 ENSMUSG00000106537 ENSMUST00000200263 Gm43502 TEC Interval_59225 chr15 49115197 49115393 + 0 NA Intergenic Intergenic 15669 ENSMUSG00000114976.1 ENSMUSG00000114976 ENSMUST00000227927 Gm2333 processed_pseudogene Interval_168971 chr9 89865378 89865709 + 0 NA Intergenic Intergenic 38561 ENSMUSG00000098627.7 ENSMUSG00000098627 ENSMUST00000184759 4930524O08Rik lincRNA Interval_18693 chr10 89386982 89387238 + 0 NA Intergenic Intergenic 46732 ENSMUSG00000074802.11 ENSMUSG00000074802 ENSMUST00000219073 Gas2l3 protein_coding Interval_46703 chr13 69498408 69499202 + 0 NA TTS (ENSMUSG00000034575.13) protein_coding-TTS (ENSMUSG00000034575.13) -15195 ENSMUSG00000113486.1 ENSMUSG00000113486 ENSMUST00000221578 Gm48676 processed_pseudogene Interval_89606 chr2 23201335 23201534 + 0 NA promoter-TSS (ENSMUSG00000081648.1) processed_pseudogene-promoter-TSS (ENSMUSG00000081648.1) -599 ENSMUSG00000081648.1 ENSMUSG00000081648 ENSMUST00000117205 Gm13423 processed_pseudogene Interval_64009 chr16 5221495 5222765 + 0 NA exon (ENSMUSG00000051669.6, exon 1 of 8) protein_coding-exon (ENSMUSG00000051669.6, exon 1 of 8) 169 ENSMUSG00000051669.6 ENSMUSG00000051669 ENSMUST00000050160 AU021092 protein_coding Interval_171112 chr9 114603307 114604510 + 0 NA intron (ENSMUSG00000056167.8, intron 13 of 14) protein_coding-intron (ENSMUSG00000056167.8, intron 13 of 19) -1716 ENSMUSG00000087925.1 ENSMUSG00000087925 ENSMUST00000157300 Gm23232 snRNA Interval_105835 chr3 89612215 89612419 + 0 NA intron (ENSMUSG00000000794.9, intron 3 of 7) protein_coding-intron (ENSMUSG00000000794.9, intron 3 of 7) -50201 ENSMUSG00000000794.9 ENSMUSG00000000794 ENSMUST00000124584 Kcnn3 protein_coding Interval_47241 chr13 79028074 79028526 + 0 NA Intergenic Intergenic -73508 ENSMUSG00000114557.1 ENSMUSG00000114557 ENSMUST00000225033 Gm8345 processed_pseudogene Interval_151607 chr7 125182935 125183917 + 0 NA Intergenic Intergenic 36460 ENSMUSG00000073844.5 ENSMUSG00000073844 ENSMUST00000073056 Gm21957 processed_pseudogene Interval_127933 chr5 109506584 109507138 + 0 NA Intergenic Intergenic 22609 ENSMUSG00000093688.1 ENSMUSG00000093688 ENSMUST00000176112 Gm8488 processed_pseudogene Interval_12809 chr10 5772795 5773899 + 0 NA Intergenic Intergenic 31253 ENSMUSG00000019773.7 ENSMUSG00000019773 ENSMUST00000142200 Fbxo5 protein_coding Interval_52704 chr14 48744508 48745004 + 0 NA intron (ENSMUSG00000098682.8, intron 3 of 3) lincRNA-intron (ENSMUSG00000098682.8, intron 4 of 4) -3947 ENSMUSG00000115579.1 ENSMUSG00000115579 ENSMUST00000227438 Gm49156 lincRNA Interval_119175 chr4 135997532 135997864 + 0 NA exon (ENSMUSG00000083852.1, exon 1 of 1) processed_pseudogene-exon (ENSMUSG00000083852.1, exon 1 of 1) 175 ENSMUSG00000083852.1 ENSMUSG00000083852 ENSMUST00000121866 Gm13007 processed_pseudogene Interval_152326 chr7 131800331 131800971 + 0 NA intron (ENSMUSG00000030849.18, intron 2 of 6) protein_coding-intron (ENSMUSG00000030849.18, intron 2 of 6) -14072 ENSMUSG00000108839.1 ENSMUSG00000108839 ENSMUST00000207793 Gm44547 TEC Interval_82788 chr18 77081485 77081981 + 0 NA intron (ENSMUSG00000025423.16, intron 1 of 13) protein_coding-intron (ENSMUSG00000025423.16, intron 1 of 12) 16488 ENSMUSG00000025423.16 ENSMUSG00000025423 ENSMUST00000168882 Pias2 protein_coding Interval_84684 chr19 15171017 15171408 + 0 NA Intergenic Intergenic -210446 ENSMUSG00000063586.1 ENSMUSG00000063586 ENSMUST00000072982 Gm5513 processed_pseudogene Interval_149460 chr7 98742992 98743681 + 0 NA Intergenic Intergenic -8255 ENSMUSG00000108988.1 ENSMUSG00000108988 ENSMUST00000208941 Gm44934 lincRNA Interval_19795 chr10 109044284 109044740 + 0 NA Intergenic Intergenic -35401 ENSMUSG00000035864.14 ENSMUSG00000035864 ENSMUST00000126278 Syt1 protein_coding Interval_46569 chr13 67260678 67260937 + 0 NA intron (ENSMUSG00000055480.7, intron 1 of 3) protein_coding-intron (ENSMUSG00000055480.7, intron 1 of 3) 17659 ENSMUSG00000055480.7 ENSMUSG00000055480 ENSMUST00000224648 Zfp458 protein_coding Interval_108682 chr3 130069358 130069655 + 0 NA TTS (ENSMUSG00000063328.6) processed_pseudogene-TTS (ENSMUSG00000063328.6) 1094 ENSMUSG00000063328.6 ENSMUSG00000063328 ENSMUST00000076703 Gm9396 processed_pseudogene Interval_21006 chr10 123175922 123176222 + 0 NA intron (ENSMUSG00000020124.10, intron 2 of 21) protein_coding-intron (ENSMUSG00000020124.10, intron 2 of 20) 2612 ENSMUSG00000112879.1 ENSMUSG00000112879 ENSMUST00000219693 Gm47726 processed_pseudogene Interval_72236 chr17 28734464 28734735 + 0 NA intron (ENSMUSG00000053436.15, intron 8 of 11) protein_coding-intron (ENSMUSG00000053436.15, intron 8 of 11) 8516 ENSMUSG00000117145.1 ENSMUSG00000117145 ENSMUST00000233003 Gm4356 protein_coding Interval_70651 chr17 12810305 12811610 + 0 NA intron (ENSMUSG00000078247.5, intron 2 of 2) antisense-intron (ENSMUSG00000078247.5, intron 1 of 1) -2695 ENSMUSG00000078247.5 ENSMUSG00000078247 ENSMUST00000161890 Airn antisense Interval_70088 chr17 5246157 5246432 + 0 NA intron (ENSMUSG00000069729.14, intron 5 of 18) protein_coding-intron (ENSMUSG00000069729.14, intron 5 of 18) -134184 ENSMUSG00000081783.2 ENSMUSG00000081783 ENSMUST00000122283 Gm15599 processed_pseudogene Interval_84731 chr19 15996817 15998616 + 0 NA intron (ENSMUSG00000097557.2, intron 2 of 2) bidirectional_promoter_lncRNA-intron (ENSMUSG00000097557.2, intron 2 of 2) 12638 ENSMUSG00000097557.2 ENSMUSG00000097557 ENSMUST00000181731 C130060C02Rik bidirectional_promoter_lncRNA Interval_146762 chr7 50048446 50049140 + 0 NA intron (ENSMUSG00000055409.14, intron 2 of 9) protein_coding-intron (ENSMUSG00000055409.14, intron 2 of 19) -49517 ENSMUSG00000055409.14 ENSMUSG00000055409 ENSMUST00000154410 Nell1 protein_coding Interval_43983 chr13 38690123 38690383 + 0 NA Intergenic Intergenic -15687 ENSMUSG00000114651.1 ENSMUSG00000114651 ENSMUST00000224206 Gm6200 processed_pseudogene Interval_122978 chr5 28107289 28107656 + 0 NA Intergenic Intergenic 32806 ENSMUSG00000045294.11 ENSMUSG00000045294 ENSMUST00000199728 Insig1 protein_coding Interval_93600 chr2 74740027 74741460 + 0 NA intron (ENSMUSG00000079277.9, intron 1 of 2) protein_coding-intron (ENSMUSG00000079277.9, intron 1 of 2) -4979 ENSMUSG00000079277.9 ENSMUSG00000079277 ENSMUST00000190553 Hoxd3 protein_coding Interval_142071 chr6 136940611 136941721 + 0 NA intron (ENSMUSG00000030220.13, intron 1 of 5) protein_coding-intron (ENSMUSG00000030220.13, intron 1 of 5) 702 ENSMUSG00000030220.13 ENSMUSG00000030220 ENSMUST00000154440 Arhgdib protein_coding Interval_106682 chr3 98616080 98616825 + 0 NA intron (ENSMUSG00000050064.14, intron 1 of 4) protein_coding-intron (ENSMUSG00000050064.14, intron 1 of 4) 13800 ENSMUSG00000038092.6 ENSMUSG00000038092 ENSMUST00000044094 Hsd3b5 protein_coding Interval_139060 chr6 94680967 94681295 + 0 NA promoter-TSS (ENSMUSG00000030029.14) protein_coding-promoter-TSS (ENSMUSG00000030029.14) 19027 ENSMUSG00000030029.14 ENSMUSG00000030029 ENSMUST00000124165 Lrig1 protein_coding Interval_99531 chr2 162996818 162997528 + 0 NA promoter-TSS (ENSMUSG00000017868.16) protein_coding-promoter-TSS (ENSMUSG00000017868.16) -939 ENSMUSG00000017868.16 ENSMUSG00000017868 ENSMUST00000139053 Sgk2 protein_coding Interval_119681 chr4 139182328 139182884 + 0 NA Intergenic Intergenic -1951 ENSMUSG00000073739.3 ENSMUSG00000073739 ENSMUST00000097827 Gm16287 antisense Interval_55041 chr14 77396793 77397435 + 0 NA intron (ENSMUSG00000022012.9, intron 3 of 6) protein_coding-intron (ENSMUSG00000022012.9, intron 4 of 18) 43862 ENSMUSG00000115244.1 ENSMUSG00000115244 ENSMUST00000226498 Gm49002 antisense Interval_23964 chr11 28951488 28951864 + 0 NA Intergenic Intergenic -5048 ENSMUSG00000081695.1 ENSMUSG00000081695 ENSMUST00000121462 Rpsa-ps5 processed_pseudogene Interval_87091 chr19 46064165 46064789 + 0 NA exon (ENSMUSG00000055491.14, exon 5 of 14) protein_coding-exon (ENSMUSG00000055491.14, exon 5 of 14) 7613 ENSMUSG00000055491.14 ENSMUSG00000055491 ENSMUST00000146882 Pprc1 protein_coding Interval_87450 chr19 51459997 51460488 + 0 NA Intergenic Intergenic -171307 ENSMUSG00000117806.1 ENSMUSG00000117806 ENSMUST00000237010 Gm50325 processed_pseudogene Interval_1540 chr1 25119799 25120436 + 0 NA intron (ENSMUSG00000033569.17, intron 22 of 30) protein_coding-intron (ENSMUSG00000033569.17, intron 21 of 29) 85579 ENSMUSG00000033569.17 ENSMUSG00000033569 ENSMUST00000189254 Adgrb3 protein_coding Interval_40254 chr12 102782971 102783337 + 0 NA exon (ENSMUSG00000041702.7, exon 12 of 12) protein_coding-exon (ENSMUSG00000041702.7, exon 12 of 12) -18442 ENSMUSG00000114106.1 ENSMUSG00000114106 ENSMUST00000221771 Gm47042 processed_pseudogene Interval_52541 chr14 47386356 47387024 + 0 NA TTS (ENSMUSG00000050335.17) protein_coding-TTS (ENSMUSG00000050335.17) 12774 ENSMUSG00000050335.17 ENSMUSG00000050335 ENSMUST00000146468 Lgals3 protein_coding Interval_48355 chr13 98443729 98444659 + 0 NA Intergenic Intergenic -9129 ENSMUSG00000099446.1 ENSMUSG00000099446 ENSMUST00000186644 2310005E17Rik lincRNA Interval_157602 chr8 71660430 71661026 + 0 NA intron (ENSMUSG00000034799.16, intron 8 of 44) protein_coding-intron (ENSMUSG00000034799.16, intron 8 of 43) 11008 ENSMUSG00000034799.16 ENSMUSG00000034799 ENSMUST00000175780 Unc13a protein_coding Interval_144863 chr7 28660293 28660645 + 0 NA intron (ENSMUSG00000108905.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000108905.1, intron 1 of 1) 18082 ENSMUSG00000108865.1 ENSMUSG00000108865 ENSMUST00000209122 Gm44617 processed_transcript Interval_136725 chr6 58621184 58621381 + 0 NA intron (ENSMUSG00000029802.13, intron 2 of 2) protein_coding-intron (ENSMUSG00000029802.13, intron 1 of 15) -19300 ENSMUSG00000029802.13 ENSMUSG00000029802 ENSMUST00000134426 Abcg2 protein_coding Interval_73281 chr17 35954361 35954621 + 0 NA Intergenic Intergenic 6323 ENSMUSG00000077931.1 ENSMUSG00000077931 ENSMUST00000104738 Mir877 miRNA Interval_153280 chr7 143250970 143251204 + 0 NA promoter-TSS (ENSMUSG00000098857.1) misc_RNA-promoter-TSS (ENSMUSG00000098857.1) -280 ENSMUSG00000098857.1 ENSMUSG00000098857 ENSMUST00000183938 Gm27395 misc_RNA Interval_82417 chr18 73856237 73856691 + 0 NA Intergenic Intergenic -2923 ENSMUSG00000064036.15 ENSMUSG00000064036 ENSMUST00000134847 Mro protein_coding Interval_127248 chr5 101854318 101855399 + 0 NA intron (ENSMUSG00000043940.15, intron 55 of 64) protein_coding-intron (ENSMUSG00000043940.15, intron 57 of 66) 17406 ENSMUSG00000092354.7 ENSMUSG00000092354 ENSMUST00000174312 Gm20548 antisense Interval_173056 chrX 68892839 68893069 + 0 NA promoter-TSS (ENSMUSG00000056815.1) protein_coding-promoter-TSS (ENSMUSG00000056815.1) 99 ENSMUSG00000056815.1 ENSMUSG00000056815 ENSMUST00000074894 Gm6812 protein_coding Interval_49759 chr13 114607853 114608070 + 0 NA promoter-TSS (ENSMUSG00000114879.1) lincRNA-promoter-TSS (ENSMUSG00000114879.1) 724 ENSMUSG00000051758.6 ENSMUSG00000051758 ENSMUST00000181553 4930544M13Rik lincRNA Interval_9565 chr1 159450724 159450935 + 0 NA Intergenic Intergenic 21869 ENSMUSG00000103389.1 ENSMUSG00000103389 ENSMUST00000193072 Gm37757 processed_pseudogene Interval_156703 chr8 57475373 57476259 + 0 NA intron (ENSMUSG00000031610.3, intron 2 of 2) protein_coding-intron (ENSMUSG00000031610.3, intron 2 of 2) 12044 ENSMUSG00000031609.3 ENSMUSG00000031609 ENSMUST00000034022 Sap30 protein_coding Interval_82572 chr18 75225349 75225542 + 0 NA intron (ENSMUSG00000035765.10, intron 14 of 16) protein_coding-intron (ENSMUSG00000035765.10, intron 14 of 16) -42631 ENSMUSG00000094153.2 ENSMUSG00000094153 ENSMUST00000179328 Gm8807 processed_pseudogene Interval_5498 chr1 89287507 89287796 + 0 NA Intergenic Intergenic -30670 ENSMUSG00000102083.1 ENSMUSG00000102083 ENSMUST00000191231 Gm5259 processed_pseudogene Interval_92069 chr2 52973813 52974017 + 0 NA intron (ENSMUSG00000036053.17, intron 1 of 26) protein_coding-intron (ENSMUSG00000036053.17, intron 1 of 26) 116055 ENSMUSG00000036053.17 ENSMUSG00000036053 ENSMUST00000050719 Fmnl2 protein_coding Interval_119203 chr4 136177397 136178254 + 0 NA intron (ENSMUSG00000018983.9, intron 1 of 6) protein_coding-intron (ENSMUSG00000018983.9, intron 1 of 6) -2958 ENSMUSG00000018983.9 ENSMUSG00000018983 ENSMUST00000149750 E2f2 protein_coding Interval_93340 chr2 72087719 72088166 + 0 NA intron (ENSMUSG00000049044.16, intron 1 of 2) protein_coding-intron (ENSMUSG00000049044.16, intron 1 of 27) 60854 ENSMUSG00000085439.1 ENSMUSG00000085439 ENSMUST00000126462 Rapgef4os1 antisense Interval_54558 chr14 70673288 70673501 + 0 NA intron (ENSMUSG00000022100.14, intron 21 of 27) protein_coding-intron (ENSMUSG00000022100.14, intron 21 of 27) -1056 ENSMUSG00000115387.1 ENSMUSG00000115387 ENSMUST00000228317 Gm49244 processed_pseudogene Interval_89816 chr2 25634001 25634219 + 0 NA Intergenic Intergenic 6440 ENSMUSG00000052403.11 ENSMUSG00000052403 ENSMUST00000135799 Fcnaos antisense Interval_17586 chr10 78002817 78003075 + 0 NA intron (ENSMUSG00000020277.10, intron 1 of 5) protein_coding-intron (ENSMUSG00000020277.10, intron 2 of 21) 6790 ENSMUSG00000020277.10 ENSMUSG00000020277 ENSMUST00000220304 Pfkl protein_coding Interval_81739 chr18 64264741 64266914 + 0 NA promoter-TSS (ENSMUSG00000056812.14) protein_coding-promoter-TSS (ENSMUSG00000056812.14) 1208 ENSMUSG00000056812.14 ENSMUSG00000056812 ENSMUST00000129518 St8sia3 protein_coding Interval_162862 chr9 10557963 10558440 + 0 NA intron (ENSMUSG00000039488.15, intron 2 of 20) protein_coding-intron (ENSMUSG00000039488.15, intron 2 of 24) 82266 ENSMUSG00000111648.1 ENSMUSG00000111648 ENSMUST00000217614 Gm46103 processed_pseudogene Interval_96623 chr2 126597747 126598036 + 0 NA exon (ENSMUSG00000027360.5, exon 10 of 12) protein_coding-exon (ENSMUSG00000027360.5, exon 10 of 12) 21408 ENSMUSG00000027360.5 ENSMUSG00000027360 ENSMUST00000148591 Hdc protein_coding Interval_81485 chr18 61049991 61050208 + 0 NA intron (ENSMUSG00000024620.11, intron 2 of 23) protein_coding-intron (ENSMUSG00000024620.11, intron 1 of 22) 4899 ENSMUSG00000024620.11 ENSMUSG00000024620 ENSMUST00000115274 Pdgfrb protein_coding Interval_67353 chr16 47300922 47301411 + 0 NA Intergenic Intergenic 88796 ENSMUSG00000116928.1 ENSMUSG00000116928 ENSMUST00000232587 Gm18169 processed_pseudogene Interval_76041 chr17 74534070 74534279 + 0 NA intron (ENSMUSG00000024073.16, intron 1 of 72) protein_coding-intron (ENSMUSG00000024073.16, intron 1 of 72) -6530 ENSMUSG00000117358.1 ENSMUSG00000117358 ENSMUST00000234285 Gm31645 processed_transcript Interval_38637 chr12 80730595 80731296 + 0 NA Intergenic Intergenic 9213 ENSMUSG00000066438.6 ENSMUSG00000066438 ENSMUST00000153762 Plekhd1 protein_coding Interval_162670 chr9 7713733 7714323 + 0 NA Intergenic Intergenic -9119 ENSMUSG00000110887.1 ENSMUSG00000110887 ENSMUST00000214564 Cbx3-ps8 processed_pseudogene Interval_15472 chr10 47805119 47806065 + 0 NA Intergenic Intergenic -136249 ENSMUSG00000112917.1 ENSMUSG00000112917 ENSMUST00000218293 Gm47331 processed_pseudogene Interval_119512 chr4 138028550 138028773 + 0 NA intron (ENSMUSG00000028760.16, intron 2 of 8) protein_coding-intron (ENSMUSG00000028760.16, intron 2 of 9) 35148 ENSMUSG00000028760.16 ENSMUSG00000028760 ENSMUST00000148074 Eif4g3 protein_coding Interval_80183 chr18 38075060 38075818 + 0 NA Intergenic Intergenic 51910 ENSMUSG00000118056.1 ENSMUSG00000118056 ENSMUST00000236681 Gm30093 lincRNA Interval_110721 chr4 7023602 7024277 + 0 NA Intergenic Intergenic 15575 ENSMUSG00000083023.1 ENSMUSG00000083023 ENSMUST00000121663 Gm11804 processed_pseudogene Interval_31544 chr11 101276326 101276939 + 0 NA promoter-TSS (ENSMUSG00000035112.17) protein_coding-promoter-TSS (ENSMUSG00000035112.17) -14 ENSMUSG00000035112.17 ENSMUSG00000035112 ENSMUST00000170372 Wnk4 protein_coding Interval_56852 chr14 122440611 122440852 + 0 NA intron (ENSMUSG00000064052.3, intron 1 of 2) processed_transcript-intron (ENSMUSG00000064052.3, intron 1 of 2) -3836 ENSMUSG00000064052.3 ENSMUSG00000064052 ENSMUST00000238321 Gm5089 processed_transcript Interval_107881 chr3 116536757 116537770 + 0 NA intron (ENSMUSG00000000340.10, intron 4 of 4) protein_coding-intron (ENSMUSG00000000340.10, intron 5 of 10) 5114 ENSMUSG00000105992.1 ENSMUSG00000105992 ENSMUST00000199796 Gm43651 TEC Interval_35683 chr12 27423255 27424314 + 0 NA Intergenic Intergenic -81210 ENSMUSG00000063632.6 ENSMUSG00000063632 ENSMUST00000079063 Sox11 protein_coding Interval_6753 chr1 119209154 119210240 + 0 NA Intergenic Intergenic 33056 ENSMUSG00000100767.1 ENSMUSG00000100767 ENSMUST00000186012 Gm3508 processed_pseudogene Interval_63113 chr15 99148319 99150968 + 0 NA exon (ENSMUSG00000051934.5, exon 2 of 13) protein_coding-exon (ENSMUSG00000051934.5, exon 2 of 13) -16471 ENSMUSG00000088377.1 ENSMUSG00000088377 ENSMUST00000157752 Gm25183 snoRNA Interval_41958 chr13 5549469 5551536 + 0 NA intron (ENSMUSG00000114053.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000114053.1, intron 1 of 2) 20626 ENSMUSG00000114053.1 ENSMUSG00000114053 ENSMUST00000223254 Gm35330 lincRNA Interval_170266 chr9 106566083 106566893 + 0 NA Intergenic Intergenic 4508 ENSMUSG00000041009.8 ENSMUSG00000041009 ENSMUST00000085111 Iqcf4 protein_coding Interval_28569 chr11 76770738 76770930 + 0 NA Intergenic Intergenic -7267 ENSMUSG00000010392.8 ENSMUSG00000010392 ENSMUST00000137767 Gosr1 protein_coding Interval_54357 chr14 67906332 67907698 + 0 NA intron (ENSMUSG00000044447.5, intron 1 of 17) protein_coding-intron (ENSMUSG00000044447.5, intron 1 of 51) -47270 ENSMUSG00000098866.1 ENSMUSG00000098866 ENSMUST00000183732 Mir6539 miRNA Interval_77950 chr18 6021401 6021799 + 0 NA Intergenic Intergenic -6579 ENSMUSG00000117548.1 ENSMUSG00000117548 ENSMUST00000234469 Gm41662 TEC Interval_13371 chr10 17392451 17394496 + 0 NA Intergenic Intergenic -60596 ENSMUSG00000111922.1 ENSMUSG00000111922 ENSMUST00000220296 Gm47760 lincRNA Interval_129681 chr5 121704328 121705264 + 0 NA Intergenic Intergenic -7064 ENSMUSG00000042605.16 ENSMUSG00000042605 ENSMUST00000199864 Atxn2 protein_coding Interval_265 KZ289068.1 417781 418380 + 0 NA NA NA NA NA Interval_52839 chr14 50978459 50980293 + 0 NA promoter-TSS (ENSMUSG00000115312.1) processed_pseudogene-promoter-TSS (ENSMUSG00000115312.1) -440 ENSMUSG00000115312.1 ENSMUSG00000115312 ENSMUST00000228819 Gm8518 processed_pseudogene Interval_52068 chr14 35058599 35059145 + 0 NA intron (ENSMUSG00000041078.7, intron 4 of 15) protein_coding-intron (ENSMUSG00000041078.7, intron 4 of 15) 160566 ENSMUSG00000115826.1 ENSMUSG00000115826 ENSMUST00000227262 Gm49034 processed_pseudogene Interval_155090 chr8 26352076 26352769 + 0 NA intron (ENSMUSG00000109682.1, intron 2 of 2) lincRNA-intron (ENSMUSG00000109682.1, intron 2 of 2) -40088 ENSMUSG00000110229.1 ENSMUSG00000110229 ENSMUST00000209523 Gm31784 lincRNA Interval_41322 chr12 112839602 112841531 + 0 NA Intergenic Intergenic -11192 ENSMUSG00000047832.9 ENSMUSG00000047832 ENSMUST00000223432 Cdca4 protein_coding Interval_159139 chr8 90968497 90968740 + 0 NA intron (ENSMUSG00000056608.14, intron 3 of 4) protein_coding-intron (ENSMUSG00000056608.14, intron 4 of 39) -60202 ENSMUSG00000074171.2 ENSMUSG00000074171 ENSMUST00000098517 Gm6658 TEC Interval_101062 chr2 174796669 174797894 + 0 NA Intergenic Intergenic 27359 ENSMUSG00000027524.9 ENSMUSG00000027524 ENSMUST00000162473 Edn3 protein_coding Interval_79258 chr18 28077324 28078323 + 0 NA Intergenic Intergenic 110994 ENSMUSG00000117416.1 ENSMUSG00000117416 ENSMUST00000234906 Gm5064 processed_pseudogene Interval_4536 chr1 74854524 74855877 + 0 NA exon (ENSMUSG00000090071.4, exon 1 of 1) protein_coding-exon (ENSMUSG00000090071.4, exon 1 of 1) 266 ENSMUSG00000090071.4 ENSMUSG00000090071 ENSMUST00000160379 Cdk5r2 protein_coding Interval_16877 chr10 69398190 69399997 + 0 NA promoter-TSS (ENSMUSG00000069601.14) protein_coding-promoter-TSS (ENSMUSG00000069601.14) 97 ENSMUSG00000069601.14 ENSMUSG00000069601 ENSMUST00000183001 Ank3 protein_coding Interval_99856 chr2 165352309 165352601 + 0 NA exon (ENSMUSG00000056824.15, exon 4 of 4) protein_coding-exon (ENSMUSG00000056824.15, exon 4 of 4) 16268 ENSMUSG00000056824.15 ENSMUSG00000056824 ENSMUST00000141140 Zfp663 protein_coding Interval_149267 chr7 96817187 96817482 + 0 NA intron (ENSMUSG00000108635.1, intron 1 of 1) protein_coding-intron (ENSMUSG00000048078.16, intron 18 of 32) 151 ENSMUSG00000085443.1 ENSMUSG00000085443 ENSMUST00000131080 Gm15416 antisense Interval_113545 chr4 56150899 56151403 + 0 NA Intergenic Intergenic -11789 ENSMUSG00000081290.1 ENSMUSG00000081290 ENSMUST00000117493 Gm12520 processed_pseudogene Interval_140249 chr6 115782773 115783888 + 0 NA intron (ENSMUSG00000030319.8, intron 4 of 14) protein_coding-intron (ENSMUSG00000030319.8, intron 4 of 14) 7673 ENSMUSG00000099163.1 ENSMUSG00000099163 ENSMUST00000183825 Mir7660 miRNA Interval_68270 chr16 71857502 71858146 + 0 NA exon (ENSMUSG00000116966.1, exon 1 of 1) processed_pseudogene-exon (ENSMUSG00000116966.1, exon 1 of 1) 567 ENSMUSG00000116966.1 ENSMUSG00000116966 ENSMUST00000232273 Gm18550 processed_pseudogene Interval_164751 chr9 41076341 41076578 + 0 NA intron (ENSMUSG00000032020.15, intron 1 of 3) protein_coding-intron (ENSMUSG00000032020.15, intron 1 of 13) 3047 ENSMUSG00000032020.15 ENSMUSG00000032020 ENSMUST00000132996 Ubash3b protein_coding Interval_32056 chr11 104877826 104878106 + 0 NA intron (ENSMUSG00000040838.10, intron 73 of 187) protein_coding-intron (ENSMUSG00000040838.10, intron 73 of 187) -50250 ENSMUSG00000080694.1 ENSMUSG00000080694 ENSMUST00000118253 Gm11621 processed_pseudogene Interval_77442 chr17 88812679 88813639 + 0 NA Intergenic Intergenic -39103 ENSMUSG00000024107.7 ENSMUSG00000024107 ENSMUST00000234269 Lhcgr protein_coding Interval_74624 chr17 53894395 53894961 + 0 NA Intergenic Intergenic -3743 ENSMUSG00000105235.1 ENSMUSG00000105235 ENSMUST00000198911 Hcfc1r1-ps1 processed_pseudogene Interval_34625 chr12 8088864 8089921 + 0 NA intron (ENSMUSG00000112694.1, intron 2 of 3) antisense-intron (ENSMUSG00000112694.1, intron 2 of 3) 111744 ENSMUSG00000020609.14 ENSMUSG00000020609 ENSMUST00000171239 Apob protein_coding Interval_67080 chr16 42717902 42718621 + 0 NA Intergenic Intergenic 54335 ENSMUSG00000116679.1 ENSMUSG00000116679 ENSMUST00000232064 Gm49739 processed_pseudogene Interval_90737 chr2 32200585 32201354 + 0 NA exon (ENSMUSG00000039262.16, exon 11 of 30) protein_coding-exon (ENSMUSG00000039262.16, exon 11 of 30) -11229 ENSMUSG00000039262.16 ENSMUSG00000039262 ENSMUST00000141053 Prrc2b protein_coding Interval_141825 chr6 134753468 134754413 + 0 NA promoter-TSS (ENSMUSG00000108196.1) antisense-promoter-TSS (ENSMUSG00000108196.1) -306 ENSMUSG00000108196.1 ENSMUSG00000108196 ENSMUST00000204237 Gm36328 antisense Interval_170049 chr9 104066003 104066635 + 0 NA TTS (ENSMUSG00000090150.10) protein_coding-TTS (ENSMUSG00000090150.10) -3414 ENSMUSG00000032557.13 ENSMUSG00000032557 ENSMUST00000214222 Uba5 protein_coding Interval_140953 chr6 123004379 123006087 + 0 NA intron (ENSMUSG00000059639.2, intron 3 of 5) protein_coding-intron (ENSMUSG00000059639.2, intron 3 of 5) 14866 ENSMUSG00000059639.2 ENSMUSG00000059639 ENSMUST00000079379 Clec4a4 protein_coding Interval_69188 chr16 91211498 91212324 + 0 NA Intergenic Intergenic 11015 ENSMUSG00000116882.1 ENSMUSG00000116882 ENSMUST00000231709 Gm49614 TEC Interval_378 chr1 4766738 4767697 + 0 NA Intergenic Intergenic -3914 ENSMUSG00000103922.1 ENSMUSG00000103922 ENSMUST00000193658 Gm6123 processed_pseudogene Interval_122107 chr5 17120495 17120738 + 0 NA Intergenic Intergenic 107318 ENSMUSG00000091273.1 ENSMUSG00000091273 ENSMUST00000166114 Gm6673 unprocessed_pseudogene Interval_59862 chr15 60015526 60016430 + 0 NA exon (ENSMUSG00000071749.3, exon 1 of 1) protein_coding-exon (ENSMUSG00000071749.3, exon 1 of 1) 635 ENSMUSG00000071749.3 ENSMUSG00000071749 ENSMUST00000096421 4933412E24Rik protein_coding Interval_105129 chr3 82073690 82075052 + 0 NA intron (ENSMUSG00000028005.13, intron 1 of 13) protein_coding-intron (ENSMUSG00000028005.13, intron 1 of 13) 318 ENSMUSG00000028005.13 ENSMUSG00000028005 ENSMUST00000193085 Gucy1b1 protein_coding Interval_145594 chr7 35764752 35765692 + 0 NA Intergenic Intergenic 13946 ENSMUSG00000044452.10 ENSMUSG00000044452 ENSMUST00000206003 Zfp507 protein_coding Interval_102199 chr3 19406212 19406426 + 0 NA Intergenic Intergenic 75546 ENSMUSG00000089149.1 ENSMUSG00000089149 ENSMUST00000158524 Gm22282 misc_RNA Interval_12686 chr10 4320234 4320450 + 0 NA intron (ENSMUSG00000038587.10, intron 2 of 3) protein_coding-intron (ENSMUSG00000038587.10, intron 2 of 3) -14203 ENSMUSG00000038587.10 ENSMUSG00000038587 ENSMUST00000215696 Akap12 protein_coding Interval_123070 chr5 29401647 29403098 + 0 NA Intergenic Intergenic 23673 ENSMUSG00000097561.1 ENSMUSG00000097561 ENSMUST00000181005 4632411P08Rik lincRNA Interval_38038 chr12 74458311 74458480 + 0 NA Intergenic Intergenic 112054 ENSMUSG00000113022.1 ENSMUSG00000113022 ENSMUST00000223349 Gm9544 processed_pseudogene Interval_89888 chr2 26241952 26243127 + 0 NA TTS (ENSMUSG00000048038.8) protein_coding-TTS (ENSMUSG00000048038.8) -17168 ENSMUSG00000036327.18 ENSMUSG00000036327 ENSMUST00000036187 Qsox2 protein_coding Interval_138435 chr6 88193824 88194540 + 0 NA intron (ENSMUSG00000015053.14, intron 1 of 5) protein_coding-intron (ENSMUSG00000015053.14, intron 1 of 5) -3501 ENSMUSG00000108010.1 ENSMUSG00000108010 ENSMUST00000203855 Gm38708 lincRNA Interval_16281 chr10 61919849 61920521 + 0 NA intron (ENSMUSG00000058806.15, intron 2 of 40) protein_coding-intron (ENSMUSG00000058806.15, intron 2 of 33) -39439 ENSMUSG00000112574.1 ENSMUSG00000112574 ENSMUST00000218711 Gm5750 processed_pseudogene Interval_22418 chr11 9888685 9889211 + 0 NA Intergenic Intergenic -151327 ENSMUSG00000081629.1 ENSMUSG00000081629 ENSMUST00000117907 Eif3s6-ps1 processed_pseudogene Interval_108722 chr3 130720844 130721842 + 0 NA Intergenic Intergenic 9003 ENSMUSG00000062006.12 ENSMUSG00000062006 ENSMUST00000200517 Rpl34 protein_coding Interval_31957 chr11 104131439 104133930 + 0 NA promoter-TSS (ENSMUSG00000018634.10) protein_coding-promoter-TSS (ENSMUSG00000018634.10) -171 ENSMUSG00000018634.10 ENSMUSG00000018634 ENSMUST00000093925 Crhr1 protein_coding Interval_130970 chr5 134332723 134333355 + 0 NA Intergenic Intergenic 6585 ENSMUSG00000093311.1 ENSMUSG00000093311 ENSMUST00000175570 Mir3965 miRNA Interval_151601 chr7 124853683 124853930 + 0 NA Intergenic Intergenic -53803 ENSMUSG00000108623.1 ENSMUSG00000108623 ENSMUST00000205944 Gm45092 lincRNA Interval_118935 chr4 134543104 134543671 + 0 NA intron (ENSMUSG00000050989.9, intron 6 of 11) protein_coding-intron (ENSMUSG00000050989.9, intron 6 of 11) -2365 ENSMUSG00000050989.9 ENSMUSG00000050989 ENSMUST00000127585 Selenon protein_coding Interval_136926 chr6 64651976 64654261 + 0 NA intron (ENSMUSG00000071424.10, intron 14 of 15) protein_coding-intron (ENSMUSG00000071424.10, intron 14 of 15) -10070 ENSMUSG00000071424.10 ENSMUSG00000071424 ENSMUST00000210324 Grid2 protein_coding Interval_141600 chr6 130664358 130665113 + 0 NA Intergenic Intergenic 33246 ENSMUSG00000107898.1 ENSMUSG00000107898 ENSMUST00000205067 Gm27013 unprocessed_pseudogene Interval_4902 chr1 82235549 82235977 + 0 NA exon (ENSMUSG00000022591.5, exon 1 of 1) protein_coding-exon (ENSMUSG00000022591.5, exon 1 of 1) 2651 ENSMUSG00000022591.5 ENSMUSG00000022591 ENSMUST00000023262 Gm9747 protein_coding Interval_142526 chr6 143083173 143084542 + 0 NA intron (ENSMUSG00000030279.15, intron 3 of 3) protein_coding-intron (ENSMUSG00000030279.15, intron 3 of 24) 16233 ENSMUSG00000030279.15 ENSMUSG00000030279 ENSMUST00000205079 C2cd5 protein_coding Interval_24363 chr11 32678800 32680289 + 0 NA intron (ENSMUSG00000020271.17, intron 2 of 4) protein_coding-intron (ENSMUSG00000020271.17, intron 1 of 13) 36640 ENSMUSG00000020271.17 ENSMUSG00000020271 ENSMUST00000143290 Fbxw11 protein_coding Interval_89075 chr2 15722367 15722611 + 0 NA intron (ENSMUSG00000075520.5, intron 17 of 38) protein_coding-intron (ENSMUSG00000075520.5, intron 17 of 38) 191376 ENSMUSG00000103356.1 ENSMUSG00000103356 ENSMUST00000192668 Gm37595 TEC Interval_48100 chr13 96002532 96002894 + 0 NA intron (ENSMUSG00000051111.16, intron 3 of 10) protein_coding-intron (ENSMUSG00000051111.16, intron 4 of 12) -12487 ENSMUSG00000051111.16 ENSMUSG00000051111 ENSMUST00000220740 Sv2c protein_coding Interval_49373 chr13 111537686 111538384 + 0 NA intron (ENSMUSG00000085634.2, intron 1 of 1) lincRNA-intron (ENSMUSG00000085634.2, intron 1 of 1) 11876 ENSMUSG00000085634.2 ENSMUSG00000085634 ENSMUST00000132880 Gm15290 lincRNA Interval_9758 chr1 161908079 161908296 + 0 NA Intergenic Intergenic 16040 ENSMUSG00000103158.5 ENSMUSG00000103158 ENSMUST00000194266 Gm31925 lincRNA Interval_4670 chr1 75918996 75919615 + 0 NA Intergenic Intergenic 99451 ENSMUSG00000099996.1 ENSMUSG00000099996 ENSMUST00000188786 Gm29065 lincRNA Interval_135886 chr6 48415834 48416414 + 0 NA exon (ENSMUSG00000042810.14, exon 16 of 16) protein_coding-exon (ENSMUSG00000042810.14, exon 16 of 16) 2788 ENSMUSG00000042810.14 ENSMUSG00000042810 ENSMUST00000204554 Krba1 protein_coding Interval_151451 chr7 122613511 122614470 + 0 NA intron (ENSMUSG00000052889.11, intron 16 of 16) protein_coding-intron (ENSMUSG00000052889.11, intron 16 of 16) -19458 ENSMUSG00000052889.11 ENSMUSG00000052889 ENSMUST00000206495 Prkcb protein_coding Interval_109101 chr3 135756955 135757265 + 0 NA Intergenic Intergenic -68547 ENSMUSG00000053897.15 ENSMUSG00000053897 ENSMUST00000133810 Slc39a8 protein_coding Interval_98663 chr2 153995574 153996432 + 0 NA intron (ENSMUSG00000078998.3, intron 10 of 10) protein_coding-intron (ENSMUSG00000078998.3, intron 10 of 10) -12273 ENSMUSG00000042459.8 ENSMUSG00000042459 ENSMUST00000132933 Bpifa2 protein_coding Interval_149697 chr7 100713917 100714398 + 0 NA TTS (ENSMUSG00000029461.17) protein_coding-TTS (ENSMUSG00000029461.17) 24471 ENSMUSG00000109035.1 ENSMUSG00000109035 ENSMUST00000207122 Gm45209 processed_pseudogene Interval_63265 chr15 100007683 100008080 + 0 NA intron (ENSMUSG00000023025.16, intron 14 of 15) protein_coding-intron (ENSMUSG00000023025.16, intron 14 of 15) -34594 ENSMUSG00000100084.2 ENSMUSG00000100084 ENSMUST00000188271 2310068J16Rik antisense Interval_163059 chr9 14890630 14891464 + 0 NA intron (ENSMUSG00000031933.17, intron 4 of 4) protein_coding-intron (ENSMUSG00000031933.17, intron 4 of 4) 12707 ENSMUSG00000031933.17 ENSMUSG00000031933 ENSMUST00000148155 Izumo1r protein_coding Interval_125863 chr5 75136966 75137791 + 0 NA intron (ENSMUSG00000107192.1, intron 2 of 3) lincRNA-intron (ENSMUSG00000107192.1, intron 2 of 3) 4180 ENSMUSG00000107258.2 ENSMUSG00000107258 ENSMUST00000202296 Olfr1401-ps1 unprocessed_pseudogene Interval_73925 chr17 45522925 45523715 + 0 NA promoter-TSS (ENSMUSG00000023949.7) protein_coding-promoter-TSS (ENSMUSG00000023949.7) 9091 ENSMUSG00000023938.8 ENSMUSG00000023938 ENSMUST00000232693 Aars2 protein_coding Interval_71927 chr17 27050579 27051862 + 0 NA intron (ENSMUSG00000117799.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000117799.1, intron 1 of 1) 194 ENSMUSG00000117799.1 ENSMUSG00000117799 ENSMUST00000236359 Gm50295 lincRNA Interval_131355 chr5 136678523 136679394 + 0 NA Intergenic Intergenic -18821 ENSMUSG00000005474.9 ENSMUSG00000005474 ENSMUST00000197849 Myl10 protein_coding Interval_83293 chr18 83826940 83827445 + 0 NA intron (ENSMUSG00000118024.1, intron 1 of 3) lincRNA-intron (ENSMUSG00000118024.1, intron 1 of 3) 414 ENSMUSG00000118024.1 ENSMUSG00000118024 ENSMUST00000237374 Gm50419 lincRNA Interval_7186 chr1 127579446 127579644 + 0 NA intron (ENSMUSG00000026347.13, intron 2 of 7) protein_coding-intron (ENSMUSG00000026347.13, intron 2 of 8) 100003 ENSMUSG00000026347.13 ENSMUSG00000026347 ENSMUST00000162406 Tmem163 protein_coding Interval_153328 chr7 143643224 143644174 + 0 NA intron (ENSMUSG00000010751.15, intron 2 of 6) protein_coding-intron (ENSMUSG00000010751.15, intron 2 of 5) -7114 ENSMUSG00000010751.15 ENSMUSG00000010751 ENSMUST00000084396 Tnfrsf22 protein_coding Interval_44623 chr13 46776295 46777320 + 0 NA intron (ENSMUSG00000021375.11, intron 4 of 15) protein_coding-intron (ENSMUSG00000021375.11, intron 27 of 37) -9158 ENSMUSG00000064558.1 ENSMUSG00000064558 ENSMUST00000082624 Gm24620 snoRNA Interval_19040 chr10 94011024 94011199 + 0 NA intron (ENSMUSG00000036099.16, intron 1 of 8) protein_coding-intron (ENSMUSG00000036099.16, intron 1 of 11) -16970 ENSMUSG00000111349.1 ENSMUSG00000111349 ENSMUST00000216926 Gm48191 processed_pseudogene Interval_106742 chr3 100280724 100280973 + 0 NA Intergenic Intergenic -22440 ENSMUSG00000064573.1 ENSMUSG00000064573 ENSMUST00000082639 Gm25802 snoRNA Interval_139765 chr6 108523563 108523948 + 0 NA intron (ENSMUSG00000030102.11, intron 60 of 61) protein_coding-intron (ENSMUSG00000030102.11, intron 60 of 61) 1932 ENSMUSG00000107458.1 ENSMUSG00000107458 ENSMUST00000203360 Gm44040 antisense Interval_125307 chr5 66093005 66093404 + 0 NA intron (ENSMUSG00000070780.11, intron 2 of 3) protein_coding-intron (ENSMUSG00000070780.11, intron 2 of 5) -8738 ENSMUSG00000107390.1 ENSMUSG00000107390 ENSMUST00000202328 Gm43323 TEC Interval_60875 chr15 77293693 77294041 + 0 NA intron (ENSMUSG00000033565.18, intron 1 of 13) protein_coding-intron (ENSMUSG00000033565.18, intron 1 of 12) -51316 ENSMUSG00000089242.1 ENSMUSG00000089242 ENSMUST00000158617 Gm24056 snRNA Interval_157320 chr8 69264289 69264600 + 0 NA Intergenic Intergenic -6636 ENSMUSG00000079038.3 ENSMUSG00000079038 ENSMUST00000078257 D130040H23Rik protein_coding Interval_67994 chr16 62832161 62833090 + 0 NA intron (ENSMUSG00000022911.11, intron 1 of 2) protein_coding-intron (ENSMUSG00000022911.11, intron 1 of 9) 14368 ENSMUSG00000022911.11 ENSMUSG00000022911 ENSMUST00000132902 Arl13b protein_coding Interval_59803 chr15 59391740 59392550 + 0 NA intron (ENSMUSG00000059586.10, intron 2 of 7) protein_coding-intron (ENSMUSG00000059586.10, intron 2 of 6) 17860 ENSMUSG00000059586.10 ENSMUSG00000059586 ENSMUST00000079703 Nsmce2 protein_coding Interval_31183 chr11 98754150 98755268 + 0 NA TTS (ENSMUSG00000058756.13) protein_coding-TTS (ENSMUSG00000058756.13) 13908 ENSMUSG00000058756.13 ENSMUSG00000058756 ENSMUST00000124072 Thra protein_coding Interval_17194 chr10 74702879 74703324 + 0 NA Intergenic Intergenic -117621 ENSMUSG00000112686.1 ENSMUSG00000112686 ENSMUST00000218638 Gm7034 processed_pseudogene Interval_49152 chr13 108699510 108700010 + 0 NA intron (ENSMUSG00000021699.17, intron 3 of 3) protein_coding-intron (ENSMUSG00000021699.17, intron 1 of 16) 29157 ENSMUSG00000059751.7 ENSMUSG00000059751 ENSMUST00000074680 Rps3a3 processed_pseudogene Interval_57344 chr15 9276249 9276438 + 0 NA promoter-TSS (ENSMUSG00000072664.11) protein_coding-promoter-TSS (ENSMUSG00000072664.11) -7158 ENSMUSG00000072664.11 ENSMUSG00000072664 ENSMUST00000176878 Ugt3a1 protein_coding Interval_112619 chr4 43629539 43632655 + 0 NA promoter-TSS (ENSMUSG00000028469.15) protein_coding-promoter-TSS (ENSMUSG00000028469.15) -328 ENSMUSG00000092675.1 ENSMUSG00000092675 ENSMUST00000174934 Gm25262 miRNA Interval_15477 chr10 48388069 48388755 + 0 NA Intergenic Intergenic 23255 ENSMUSG00000112062.1 ENSMUSG00000112062 ENSMUST00000219040 Gm47353 TEC Interval_46943 chr13 73620287 73620877 + 0 NA TTS (ENSMUSG00000021610.8) protein_coding-TTS (ENSMUSG00000021610.8) 3778 ENSMUSG00000021610.8 ENSMUSG00000021610 ENSMUST00000221130 Clptm1l protein_coding Interval_42834 chr13 20133462 20134229 + 0 NA intron (ENSMUSG00000041112.17, intron 1 of 13) protein_coding-intron (ENSMUSG00000041112.17, intron 1 of 21) -138041 ENSMUSG00000050243.6 ENSMUSG00000050243 ENSMUST00000091762 Gm5446 processed_pseudogene Interval_76824 chr17 84333633 84333855 + 0 NA intron (ENSMUSG00000024251.10, intron 13 of 14) protein_coding-intron (ENSMUSG00000024251.10, intron 28 of 37) -20065 ENSMUSG00000024251.10 ENSMUSG00000024251 ENSMUST00000234313 Thada protein_coding Interval_148132 chr7 79410229 79410528 + 0 NA TTS (ENSMUSG00000039187.16) protein_coding-TTS (ENSMUSG00000039187.16) 2139 ENSMUSG00000082400.1 ENSMUSG00000082400 ENSMUST00000119834 Gm16017 processed_pseudogene Interval_148284 chr7 80293926 80295193 + 0 NA promoter-TSS (ENSMUSG00000038943.16) protein_coding-promoter-TSS (ENSMUSG00000038943.16) 46 ENSMUSG00000038943.16 ENSMUSG00000038943 ENSMUST00000174599 Prc1 protein_coding Interval_28290 chr11 74941932 74942178 + 0 NA intron (ENSMUSG00000038290.15, intron 5 of 16) protein_coding-intron (ENSMUSG00000038290.15, intron 6 of 18) -5904 ENSMUSG00000088719.1 ENSMUSG00000088719 ENSMUST00000158094 Gm22733 snRNA Interval_144794 chr7 28301383 28302480 + 0 NA promoter-TSS (ENSMUSG00000003436.11) protein_coding-promoter-TSS (ENSMUSG00000003436.11) -159 ENSMUSG00000003436.11 ENSMUSG00000003436 ENSMUST00000145512 Dll3 protein_coding Interval_130896 chr5 133712569 133713183 + 0 NA Intergenic Intergenic -114470 ENSMUSG00000105227.1 ENSMUSG00000105227 ENSMUST00000196125 Gm36667 lincRNA Interval_121546 chr5 3351660 3352499 + 0 NA intron (ENSMUSG00000040274.11, intron 1 of 1) protein_coding-intron (ENSMUSG00000040274.11, intron 1 of 6) 81760 ENSMUSG00000106658.1 ENSMUSG00000106658 ENSMUST00000197473 Gm36548 lincRNA Interval_57916 chr15 25378998 25380492 + 0 NA intron (ENSMUSG00000045763.8, intron 1 of 1) protein_coding-intron (ENSMUSG00000045763.8, intron 1 of 1) 33953 ENSMUSG00000045763.8 ENSMUSG00000045763 ENSMUST00000228597 Basp1 protein_coding Interval_84710 chr19 15820127 15820340 + 0 NA Intergenic Intergenic 17175 ENSMUSG00000117995.1 ENSMUSG00000117995 ENSMUST00000237461 Gm50348 lincRNA Interval_103245 chr3 37419117 37420926 + 0 NA promoter-TSS (ENSMUSG00000027722.14) protein_coding-promoter-TSS (ENSMUSG00000027722.14) -464 ENSMUSG00000050174.15 ENSMUSG00000050174 ENSMUST00000138949 Nudt6 protein_coding Interval_158694 chr8 85337472 85337677 + 0 NA intron (ENSMUSG00000031698.14, intron 9 of 12) protein_coding-intron (ENSMUSG00000031698.14, intron 9 of 12) -1769 ENSMUSG00000084895.1 ENSMUSG00000084895 ENSMUST00000151550 AA672651 antisense Interval_64280 chr16 10192477 10193762 + 0 NA intron (ENSMUSG00000039200.16, intron 1 of 5) protein_coding-intron (ENSMUSG00000039200.16, intron 1 of 10) -19687 ENSMUSG00000039200.16 ENSMUSG00000039200 ENSMUST00000230872 Atf7ip2 protein_coding Interval_147235 chr7 64905290 64906377 + 0 NA intron (ENSMUSG00000030518.17, intron 2 of 9) protein_coding-intron (ENSMUSG00000030518.17, intron 2 of 9) 19727 ENSMUSG00000030518.17 ENSMUSG00000030518 ENSMUST00000144535 Fam189a1 protein_coding Interval_151425 chr7 122279089 122280547 + 0 NA Intergenic Intergenic 14724 ENSMUSG00000064532.1 ENSMUSG00000064532 ENSMUST00000082598 Gm23614 snRNA Interval_43264 chr13 28069182 28069576 + 0 NA Intergenic Intergenic -2682 ENSMUSG00000114182.1 ENSMUSG00000114182 ENSMUST00000223339 Gm47019 unprocessed_pseudogene Interval_145495 chr7 35192391 35192753 + 0 NA intron (ENSMUSG00000030495.12, intron 1 of 3) protein_coding-intron (ENSMUSG00000030495.12, intron 1 of 10) 6090 ENSMUSG00000030495.12 ENSMUSG00000030495 ENSMUST00000146959 Slc7a10 protein_coding Interval_80530 chr18 43390422 43391054 + 0 NA intron (ENSMUSG00000024501.20, intron 1 of 13) protein_coding-intron (ENSMUSG00000024501.20, intron 1 of 13) -17515 ENSMUSG00000024501.20 ENSMUSG00000024501 ENSMUST00000118071 Dpysl3 protein_coding Interval_4821 chr1 79770794 79771209 + 0 NA intron (ENSMUSG00000073643.11, intron 1 of 6) protein_coding-intron (ENSMUSG00000073643.11, intron 1 of 6) -5115 ENSMUSG00000026248.9 ENSMUSG00000026248 ENSMUST00000189176 Mrpl44 protein_coding Interval_7899 chr1 134454552 134455951 + 0 NA promoter-TSS (ENSMUSG00000026455.14) protein_coding-promoter-TSS (ENSMUSG00000026455.14) 222 ENSMUSG00000102722.1 ENSMUSG00000102722 ENSMUST00000192012 Gm37935 TEC Interval_88302 chr2 3499750 3500211 + 0 NA TTS (ENSMUSG00000109865.1) protein_coding-TTS (ENSMUSG00000109865.1) -7938 ENSMUSG00000109865.1 ENSMUSG00000109865 ENSMUST00000148167 Hspa14 protein_coding Interval_55875 chr14 101723504 101723942 + 0 NA Intergenic Intergenic 6092 ENSMUSG00000053821.4 ENSMUSG00000053821 ENSMUST00000066461 Gm9922 bidirectional_promoter_lncRNA Interval_78805 chr18 20725161 20726592 + 0 NA intron (ENSMUSG00000056124.5, intron 2 of 8) protein_coding-intron (ENSMUSG00000056124.5, intron 2 of 8) 20528 ENSMUSG00000056124.5 ENSMUSG00000056124 ENSMUST00000070080 B4galt6 protein_coding Interval_143875 chr7 16880309 16880802 + 0 NA intron (ENSMUSG00000078794.4, intron 1 of 3) protein_coding-intron (ENSMUSG00000078794.4, intron 1 of 3) 5238 ENSMUSG00000078794.4 ENSMUSG00000078794 ENSMUST00000108493 Dact3 protein_coding Interval_101232 chr2 179662963 179664105 + 0 NA intron (ENSMUSG00000000305.12, intron 2 of 2) protein_coding-intron (ENSMUSG00000000305.12, intron 2 of 15) -49967 ENSMUSG00000083410.1 ENSMUSG00000083410 ENSMUST00000120800 Gm14300 processed_pseudogene Interval_161011 chr8 116907635 116907837 + 0 NA intron (ENSMUSG00000014633.15, intron 2 of 4) protein_coding-intron (ENSMUSG00000014633.15, intron 2 of 2) -13212 ENSMUSG00000014633.15 ENSMUSG00000014633 ENSMUST00000128304 Cmc2 protein_coding Interval_111973 chr4 32916546 32917174 + 0 NA intron (ENSMUSG00000040183.13, intron 1 of 16) protein_coding-intron (ENSMUSG00000040183.13, intron 1 of 16) 24174 ENSMUSG00000083565.1 ENSMUSG00000083565 ENSMUST00000119904 Gm11941 processed_pseudogene Interval_26468 chr11 58028764 58029363 + 0 NA intron (ENSMUSG00000037331.15, intron 1 of 18) protein_coding-intron (ENSMUSG00000037331.15, intron 1 of 18) 19999 ENSMUSG00000037331.15 ENSMUSG00000037331 ENSMUST00000140500 Larp1 protein_coding Interval_85986 chr19 34666004 34666336 + 0 NA Intergenic Intergenic 25299 ENSMUSG00000034459.8 ENSMUSG00000034459 ENSMUST00000102824 Ifit1 protein_coding Interval_69813 chr16 96845506 96846432 + 0 NA intron (ENSMUSG00000050272.10, intron 3 of 32) protein_coding-intron (ENSMUSG00000050272.10, intron 3 of 32) -72763 ENSMUSG00000117324.1 ENSMUSG00000117324 ENSMUST00000232718 Gm32432 antisense Interval_156429 chr8 48109457 48110778 + 0 NA promoter-TSS (ENSMUSG00000031562.15) protein_coding-promoter-TSS (ENSMUSG00000031562.15) -45 ENSMUSG00000031562.15 ENSMUSG00000031562 ENSMUST00000174379 Dctd protein_coding Interval_122139 chr5 18034751 18035065 + 0 NA Intergenic Intergenic 72359 ENSMUSG00000028777.8 ENSMUSG00000028777 ENSMUST00000030561 Gnat3 protein_coding Interval_53382 chr14 56801403 56801712 + 0 NA intron (ENSMUSG00000040123.17, intron 3 of 6) protein_coding-intron (ENSMUSG00000040123.17, intron 4 of 7) 10140 ENSMUSG00000040123.17 ENSMUSG00000040123 ENSMUST00000224498 Zmym5 protein_coding Interval_123599 chr5 33701717 33702034 + 0 NA Intergenic Intergenic -18901 ENSMUSG00000106971.1 ENSMUSG00000106971 ENSMUST00000201254 Gm42965 processed_pseudogene Interval_57038 chr15 5068861 5069860 + 0 NA Intergenic Intergenic -5620 ENSMUSG00000079105.4 ENSMUSG00000079105 ENSMUST00000110689 C7 protein_coding Interval_135415 chr6 39226329 39227042 + 0 NA Intergenic Intergenic -13429 ENSMUSG00000107365.1 ENSMUSG00000107365 ENSMUST00000200801 Gm43479 lincRNA Interval_74837 chr17 56797815 56801088 + 0 NA TTS (ENSMUSG00000024206.15) protein_coding-TTS (ENSMUSG00000024206.15) 29201 ENSMUSG00000090273.3 ENSMUSG00000090273 ENSMUST00000168666 Prr22 protein_coding Interval_100731 chr2 172180368 172181035 + 0 NA Intergenic Intergenic 3919 ENSMUSG00000105205.1 ENSMUSG00000105205 ENSMUST00000200362 Gm44301 miRNA Interval_107438 chr3 107680432 107682031 + 0 NA intron (ENSMUSG00000027893.14, intron 1 of 3) protein_coding-intron (ENSMUSG00000027893.14, intron 1 of 16) 14732 ENSMUSG00000027893.14 ENSMUSG00000027893 ENSMUST00000138116 Ahcyl1 protein_coding Interval_152810 chr7 138133389 138133668 + 0 NA Intergenic Intergenic -31989 ENSMUSG00000064575.1 ENSMUSG00000064575 ENSMUST00000082641 Gm25798 snRNA Interval_123182 chr5 30446982 30447467 + 0 NA intron (ENSMUSG00000062372.13, intron 1 of 45) protein_coding-intron (ENSMUSG00000062372.13, intron 1 of 46) 14635 ENSMUSG00000062372.13 ENSMUSG00000062372 ENSMUST00000128177 Otof protein_coding Interval_14073 chr10 26551790 26552149 + 0 NA Intergenic Intergenic -58778 ENSMUSG00000111882.2 ENSMUSG00000111882 ENSMUST00000218590 Gm48864 unitary_pseudogene Interval_23727 chr11 25435818 25436256 + 0 NA Intergenic Intergenic 134774 ENSMUSG00000086439.1 ENSMUSG00000086439 ENSMUST00000145127 Gm12069 lincRNA Interval_2640 chr1 42850821 42852013 + 0 NA exon (ENSMUSG00000060679.14, exon 1 of 11) protein_coding-exon (ENSMUSG00000060679.14, exon 1 of 11) 15401 ENSMUSG00000077448.1 ENSMUSG00000077448 ENSMUST00000104260 Gm23126 snoRNA Interval_22206 chr11 7151999 7152331 + 0 NA intron (ENSMUSG00000020431.5, intron 14 of 19) protein_coding-intron (ENSMUSG00000020431.5, intron 14 of 19) -7717 ENSMUSG00000020431.5 ENSMUSG00000020431 ENSMUST00000135398 Adcy1 protein_coding Interval_1105 chr1 15768249 15768575 + 0 NA Intergenic Intergenic 7651 ENSMUSG00000100814.1 ENSMUSG00000100814 ENSMUST00000188400 Gm28669 processed_pseudogene Interval_80787 chr18 47067782 47068064 + 0 NA intron (ENSMUSG00000042705.9, intron 5 of 6) protein_coding-intron (ENSMUSG00000042705.9, intron 5 of 6) -44216 ENSMUSG00000117621.1 ENSMUSG00000117621 ENSMUST00000234633 Hspe1-rs1 protein_coding Interval_94832 chr2 95799223 95800037 + 0 NA Intergenic Intergenic -38458 ENSMUSG00000087537.1 ENSMUSG00000087537 ENSMUST00000138883 Gm13799 lincRNA Interval_44868 chr13 49221058 49221373 + 0 NA Intergenic Intergenic -17099 ENSMUSG00000037960.11 ENSMUSG00000037960 ENSMUST00000223159 Card19 protein_coding Interval_132404 chr5 144737632 144738113 + 0 NA exon (ENSMUSG00000043388.8, exon 7 of 8) protein_coding-exon (ENSMUSG00000043388.8, exon 7 of 8) -14075 ENSMUSG00000082524.3 ENSMUSG00000082524 ENSMUST00000121256 Gm6272 processed_pseudogene Interval_165804 chr9 53301240 53302966 + 0 NA intron (ENSMUSG00000034584.3, intron 1 of 5) protein_coding-intron (ENSMUSG00000034584.3, intron 1 of 5) 37488 ENSMUSG00000032048.3 ENSMUSG00000032048 ENSMUST00000034550 4930510E17Rik lincRNA Interval_17527 chr10 77522227 77522493 + 0 NA Intergenic Intergenic -6788 ENSMUSG00000032977.9 ENSMUSG00000032977 ENSMUST00000217681 Fam207a protein_coding Interval_166561 chr9 60907009 60907308 + 0 NA Intergenic Intergenic -12065 ENSMUSG00000111444.1 ENSMUSG00000111444 ENSMUST00000216374 Gm47923 lincRNA Interval_72721 chr17 31753278 31754191 + 0 NA Intergenic Intergenic -35792 ENSMUSG00000117355.1 ENSMUSG00000117355 ENSMUST00000234824 Gm49999 lincRNA Interval_138352 chr6 87523799 87524801 + 0 NA intron (ENSMUSG00000030047.14, intron 1 of 10) protein_coding-intron (ENSMUSG00000030047.14, intron 1 of 9) -9107 ENSMUSG00000108184.1 ENSMUSG00000108184 ENSMUST00000203063 Gm44198 TEC Interval_61508 chr15 82046331 82047874 + 0 NA intron (ENSMUSG00000063480.8, intron 1 of 2) protein_coding-intron (ENSMUSG00000063480.8, intron 1 of 1) 417 ENSMUSG00000063480.8 ENSMUSG00000063480 ENSMUST00000166578 Snu13 protein_coding Interval_142093 chr6 137110072 137111430 + 0 NA intron (ENSMUSG00000030222.13, intron 2 of 4) protein_coding-intron (ENSMUSG00000030222.13, intron 2 of 4) 29312 ENSMUSG00000030222.13 ENSMUSG00000030222 ENSMUST00000149100 Rerg protein_coding Interval_87373 chr19 48001357 48001644 + 0 NA intron (ENSMUSG00000046585.9, intron 15 of 17) protein_coding-intron (ENSMUSG00000046585.9, intron 15 of 17) 63825 ENSMUSG00000046585.9 ENSMUSG00000046585 ENSMUST00000066308 Cfap58 protein_coding Interval_132492 chr5 145301719 145302858 + 0 NA Intergenic Intergenic 9518 ENSMUSG00000104682.1 ENSMUSG00000104682 ENSMUST00000197174 Gm42636 TEC Interval_29834 chr11 87154980 87155284 + 0 NA intron (ENSMUSG00000018548.15, intron 8 of 23) protein_coding-intron (ENSMUSG00000018548.15, intron 8 of 23) -28174 ENSMUSG00000085310.7 ENSMUSG00000085310 ENSMUST00000155828 Gm11491 antisense Interval_52259 chr14 41090511 41091516 + 0 NA intron (ENSMUSG00000021790.12, intron 6 of 6) protein_coding-intron (ENSMUSG00000021790.12, intron 6 of 7) -14022 ENSMUSG00000037798.7 ENSMUSG00000037798 ENSMUST00000047286 Mat1a protein_coding Interval_48320 chr13 98171351 98171584 + 0 NA intron (ENSMUSG00000021662.11, intron 1 of 34) protein_coding-intron (ENSMUSG00000021662.11, intron 1 of 35) 82690 ENSMUSG00000041747.3 ENSMUSG00000041747 ENSMUST00000224842 Utp15 protein_coding Interval_36913 chr12 55313650 55314124 + 0 NA intron (ENSMUSG00000021023.14, intron 3 of 6) protein_coding-intron (ENSMUSG00000021023.14, intron 3 of 6) 14310 ENSMUSG00000021023.14 ENSMUSG00000021023 ENSMUST00000183654 Prorp protein_coding Interval_16562 chr10 63709347 63709892 + 0 NA intron (ENSMUSG00000060843.11, intron 5 of 17) protein_coding-intron (ENSMUSG00000060843.11, intron 4 of 16) -111436 ENSMUSG00000060843.11 ENSMUSG00000060843 ENSMUST00000135474 Ctnna3 protein_coding Interval_134511 chr6 29244987 29245900 + 0 NA Intergenic Intergenic 11009 ENSMUSG00000089289.1 ENSMUSG00000089289 ENSMUST00000158664 Gm26021 snoRNA Interval_35587 chr12 25083388 25084631 + 0 NA Intergenic Intergenic 12078 ENSMUSG00000020644.9 ENSMUSG00000020644 ENSMUST00000222667 Id2 protein_coding Interval_27973 chr11 71758309 71758840 + 0 NA intron (ENSMUSG00000020811.16, intron 1 of 1) protein_coding-intron (ENSMUSG00000020811.16, intron 1 of 8) 8654 ENSMUSG00000020811.16 ENSMUSG00000020811 ENSMUST00000132095 Wscd1 protein_coding Interval_19156 chr10 95202689 95204089 + 0 NA intron (ENSMUSG00000045867.10, intron 1 of 1) protein_coding-intron (ENSMUSG00000045867.10, intron 2 of 2) 43028 ENSMUSG00000112682.1 ENSMUSG00000112682 ENSMUST00000220149 Gm48874 TEC Interval_144287 chr7 24300915 24301107 + 0 NA TTS (ENSMUSG00000074282.10) protein_coding-TTS (ENSMUSG00000074282.10) -1374 ENSMUSG00000050605.17 ENSMUSG00000050605 ENSMUST00000206535 Zfp61 protein_coding Interval_120330 chr4 147927839 147928776 + 0 NA intron (ENSMUSG00000019055.15, intron 6 of 6) protein_coding-intron (ENSMUSG00000019055.15, intron 6 of 18) -7211 ENSMUSG00000019055.15 ENSMUSG00000019055 ENSMUST00000132075 Plod1 protein_coding Interval_28347 chr11 75308603 75308993 + 0 NA intron (ENSMUSG00000000751.13, intron 13 of 16) protein_coding-intron (ENSMUSG00000000751.13, intron 14 of 17) 9810 ENSMUSG00000106179.1 ENSMUSG00000106179 ENSMUST00000198372 Gm47300 miRNA Interval_22883 chr11 17086413 17086658 + 0 NA Intergenic Intergenic 9109 ENSMUSG00000082099.1 ENSMUSG00000082099 ENSMUST00000121971 Gm12013 processed_pseudogene Interval_11057 chr1 179042014 179043267 + 0 NA intron (ENSMUSG00000055067.15, intron 6 of 7) protein_coding-intron (ENSMUSG00000055067.15, intron 7 of 8) -125026 ENSMUSG00000089713.1 ENSMUSG00000089713 ENSMUST00000162545 Gm16564 antisense Interval_82177 chr18 68349246 68350304 + 0 NA Intergenic Intergenic 12172 ENSMUSG00000007480.5 ENSMUSG00000007480 ENSMUST00000239469 Mc5r protein_coding Interval_61216 chr15 80034315 80035325 + 0 NA intron (ENSMUSG00000116125.1, intron 4 of 4) antisense-intron (ENSMUSG00000116125.1, intron 4 of 4) -21617 ENSMUSG00000000489.7 ENSMUSG00000000489 ENSMUST00000229168 Pdgfb protein_coding Interval_103878 chr3 54154838 54156897 + 0 NA promoter-TSS (ENSMUSG00000027748.11) protein_coding-promoter-TSS (ENSMUSG00000027748.11) -748 ENSMUSG00000027748.11 ENSMUSG00000027748 ENSMUST00000200341 Trpc4 protein_coding Interval_101387 chr2 180966714 180967697 + 0 NA promoter-TSS (ENSMUSG00000027575.19) protein_coding-promoter-TSS (ENSMUSG00000027575.19) -3835 ENSMUSG00000027575.19 ENSMUSG00000027575 ENSMUST00000148908 Arfgap1 protein_coding Interval_81498 chr18 61176203 61177649 + 0 NA promoter-TSS (ENSMUSG00000024622.8) protein_coding-promoter-TSS (ENSMUSG00000024622.8) -9297 ENSMUSG00000024622.8 ENSMUSG00000024622 ENSMUST00000237498 Hmgxb3 protein_coding Interval_134235 chr6 23382767 23382988 + 0 NA intron (ENSMUSG00000017978.18, intron 17 of 29) protein_coding-intron (ENSMUSG00000017978.18, intron 16 of 29) 131744 ENSMUSG00000106775.1 ENSMUSG00000106775 ENSMUST00000202489 C130093G08Rik TEC Interval_92314 chr2 58614982 58615442 + 0 NA intron (ENSMUSG00000026839.17, intron 1 of 3) protein_coding-intron (ENSMUSG00000026839.17, intron 1 of 7) -17869 ENSMUSG00000026839.17 ENSMUSG00000026839 ENSMUST00000128864 Upp2 protein_coding Interval_114597 chr4 82929937 82930927 + 0 NA intron (ENSMUSG00000059049.14, intron 27 of 36) protein_coding-intron (ENSMUSG00000059049.14, intron 26 of 35) -45284 ENSMUSG00000038192.5 ENSMUSG00000038192 ENSMUST00000048430 Cer1 protein_coding Interval_118481 chr4 131933647 131934677 + 0 NA intron (ENSMUSG00000028906.17, intron 2 of 5) protein_coding-intron (ENSMUSG00000028906.17, intron 17 of 20) -12634 ENSMUSG00000118394.1 ENSMUSG00000118394 ENSMUST00000238664 Gm50475 lincRNA Interval_128634 chr5 114418350 114419090 + 0 NA intron (ENSMUSG00000029577.13, intron 17 of 17) protein_coding-intron (ENSMUSG00000029577.13, intron 27 of 27) 14252 ENSMUSG00000098731.1 ENSMUSG00000098731 ENSMUST00000183408 Mir7027 miRNA Interval_86150 chr19 37081649 37082465 + 0 NA intron (ENSMUSG00000039652.16, intron 7 of 10) protein_coding-intron (ENSMUSG00000039652.16, intron 7 of 10) 67105 ENSMUSG00000080544.1 ENSMUSG00000080544 ENSMUST00000116894 Gm22714 ribozyme Interval_112298 chr4 40191924 40192243 + 0 NA intron (ENSMUSG00000028405.9, intron 1 of 2) protein_coding-intron (ENSMUSG00000028405.9, intron 18 of 20) 28364 ENSMUSG00000028405.9 ENSMUSG00000028405 ENSMUST00000135787 Aco1 protein_coding Interval_7084 chr1 125574486 125574696 + 0 NA intron (ENSMUSG00000026342.10, intron 7 of 15) protein_coding-intron (ENSMUSG00000026342.10, intron 7 of 15) 13996 ENSMUSG00000026342.10 ENSMUSG00000026342 ENSMUST00000189443 Slc35f5 protein_coding Interval_66256 chr16 32679779 32680884 + 0 NA promoter-TSS (ENSMUSG00000022791.19) protein_coding-promoter-TSS (ENSMUSG00000022791.19) 2400 ENSMUSG00000022791.19 ENSMUSG00000022791 ENSMUST00000232650 Tnk2 protein_coding Interval_106638 chr3 97996193 97996555 + 0 NA Intergenic Intergenic -17153 ENSMUSG00000027878.11 ENSMUSG00000027878 ENSMUST00000079812 Notch2 protein_coding Interval_20203 chr10 115806252 115806727 + 0 NA intron (ENSMUSG00000112513.1, intron 4 of 4) antisense-intron (ENSMUSG00000112513.1, intron 4 of 4) -10343 ENSMUSG00000034127.15 ENSMUSG00000034127 ENSMUST00000035563 Tspan8 protein_coding Interval_166910 chr9 63879193 63880286 + 0 NA Intergenic Intergenic -18526 ENSMUSG00000110768.1 ENSMUSG00000110768 ENSMUST00000215935 Gm18541 processed_pseudogene Interval_23340 chr11 21559355 21559691 + 0 NA TTS (ENSMUSG00000020321.16) protein_coding-TTS (ENSMUSG00000020321.16) 5126 ENSMUSG00000093168.1 ENSMUSG00000093168 ENSMUST00000175427 Gm22990 miRNA Interval_67360 chr16 47977633 47977898 + 0 NA Intergenic Intergenic -95232 ENSMUSG00000067716.3 ENSMUSG00000067716 ENSMUST00000088296 Gm7275 processed_pseudogene Interval_130900 chr5 133753785 133754938 + 0 NA Intergenic Intergenic 88158 ENSMUSG00000106067.1 ENSMUSG00000106067 ENSMUST00000198842 Gm7902 processed_pseudogene Interval_167244 chr9 66630626 66631403 + 0 NA Intergenic Intergenic -38008 ENSMUSG00000032376.12 ENSMUSG00000032376 ENSMUST00000139952 Usp3 protein_coding Interval_8374 chr1 138467794 138468318 + 0 NA Intergenic Intergenic -47559 ENSMUSG00000099510.2 ENSMUSG00000099510 ENSMUST00000188729 Gm28501 antisense Interval_25698 chr11 50859250 50860211 + 0 NA exon (ENSMUSG00000000617.14, exon 8 of 10) protein_coding-exon (ENSMUSG00000000617.14, exon 8 of 10) -7148 ENSMUSG00000086226.1 ENSMUSG00000086226 ENSMUST00000123764 Gm12660 antisense Interval_1510 chr1 24432927 24433289 + 0 NA intron (ENSMUSG00000026141.13, intron 2 of 39) protein_coding-intron (ENSMUSG00000026141.13, intron 14 of 47) 19637 ENSMUSG00000026141.13 ENSMUSG00000026141 ENSMUST00000051344 Col19a1 protein_coding Interval_94176 chr2 84868577 84868871 + 0 NA Intergenic Intergenic 17986 ENSMUSG00000050896.12 ENSMUSG00000050896 ENSMUST00000151759 Rtn4rl2 protein_coding Interval_158111 chr8 78808273 78808570 + 0 NA intron (ENSMUSG00000031683.16, intron 2 of 2) protein_coding-intron (ENSMUSG00000031683.16, intron 3 of 3) 4793 ENSMUSG00000031683.16 ENSMUSG00000031683 ENSMUST00000146824 Lsm6 protein_coding Interval_146888 chr7 54971184 54971832 + 0 NA intron (ENSMUSG00000063297.7, intron 1 of 9) protein_coding-intron (ENSMUSG00000063297.7, intron 1 of 11) -38959 ENSMUSG00000108581.1 ENSMUSG00000108581 ENSMUST00000206190 Gm44896 TEC Interval_83756 chr19 4417065 4417850 + 0 NA Intergenic Intergenic -21866 ENSMUSG00000087132.8 ENSMUSG00000087132 ENSMUST00000136632 A930001C03Rik processed_transcript Interval_34864 chr12 12809858 12811408 + 0 NA Intergenic Intergenic 22648 ENSMUSG00000091430.1 ENSMUSG00000091430 ENSMUST00000171380 Platr19 lincRNA Interval_145051 chr7 29746450 29746829 + 0 NA Intergenic Intergenic -9215 ENSMUSG00000065659.1 ENSMUSG00000065659 ENSMUST00000083725 Gm23103 snRNA Interval_149957 chr7 103716287 103716501 + 0 NA promoter-TSS (ENSMUSG00000094822.2) protein_coding-promoter-TSS (ENSMUSG00000094822.2) 1723 ENSMUSG00000094822.2 ENSMUSG00000094822 ENSMUST00000098194 Olfr243 protein_coding Interval_88641 chr2 8362401 8362876 + 0 NA Intergenic Intergenic 109746 ENSMUSG00000088574.1 ENSMUSG00000088574 ENSMUST00000157949 Gm24534 misc_RNA Interval_146382 chr7 45614813 45616092 + 0 NA promoter-TSS (ENSMUSG00000030827.5) protein_coding-promoter-TSS (ENSMUSG00000030827.5) 38 ENSMUSG00000030827.5 ENSMUSG00000030827 ENSMUST00000033099 Fgf21 protein_coding Interval_171386 chr9 117251529 117252879 + 0 NA promoter-TSS (ENSMUSG00000039607.17) protein_coding-promoter-TSS (ENSMUSG00000039607.17) -332 ENSMUSG00000079669.2 ENSMUSG00000079669 ENSMUST00000172075 Gm17396 processed_transcript Interval_168176 chr9 77766146 77766991 + 0 NA intron (ENSMUSG00000032350.9, intron 1 of 3) protein_coding-intron (ENSMUSG00000032350.9, intron 1 of 15) 426 ENSMUSG00000032350.9 ENSMUSG00000032350 ENSMUST00000216848 Gclc protein_coding Interval_131825 chr5 140141681 140141929 + 0 NA intron (ENSMUSG00000029554.15, intron 1 of 6) protein_coding-intron (ENSMUSG00000029554.15, intron 12 of 17) 9682 ENSMUSG00000106497.1 ENSMUSG00000106497 ENSMUST00000200614 Gm43195 TEC Interval_103847 chr3 53593920 53594160 + 0 NA intron (ENSMUSG00000037016.11, intron 2 of 23) protein_coding-intron (ENSMUSG00000037016.11, intron 2 of 23) -71020 ENSMUSG00000037016.11 ENSMUSG00000037016 ENSMUST00000199323 Frem2 protein_coding Interval_3054 chr1 52726291 52727751 + 0 NA intron (ENSMUSG00000041439.15, intron 1 of 6) protein_coding-intron (ENSMUSG00000041439.15, intron 1 of 5) -22259 ENSMUSG00000100302.1 ENSMUSG00000100302 ENSMUST00000190228 Gm29670 sense_intronic Interval_157652 chr8 72095671 72096161 + 0 NA intron (ENSMUSG00000061561.5, intron 1 of 1) protein_coding-intron (ENSMUSG00000061561.5, intron 1 of 1) 6248 ENSMUSG00000109990.1 ENSMUSG00000109990 ENSMUST00000209327 Gm45543 unprocessed_pseudogene Interval_27060 chr11 62621740 62622957 + 0 NA intron (ENSMUSG00000046417.14, intron 1 of 3) protein_coding-intron (ENSMUSG00000046417.14, intron 1 of 3) -12356 ENSMUSG00000085170.1 ENSMUSG00000085170 ENSMUST00000142492 Lrrc75aos1 antisense Interval_163699 chr9 24502618 24503757 + 0 NA promoter-TSS (ENSMUSG00000043067.15) protein_coding-promoter-TSS (ENSMUSG00000043067.15) -47 ENSMUSG00000043067.15 ENSMUSG00000043067 ENSMUST00000129048 Dpy19l1 protein_coding Interval_157152 chr8 66485888 66486832 + 0 NA exon (ENSMUSG00000025591.6, exon 1 of 1) protein_coding-exon (ENSMUSG00000025591.6, exon 1 of 1) 161 ENSMUSG00000025591.6 ENSMUSG00000025591 ENSMUST00000213036 Tma16 protein_coding Interval_115897 chr4 105983721 105984557 + 0 NA Intergenic Intergenic -8254 ENSMUSG00000089065.1 ENSMUSG00000089065 ENSMUST00000158440 Gm24363 misc_RNA Interval_31820 chr11 103138181 103139223 + 0 NA TTS (ENSMUSG00000043372.12) protein_coding-TTS (ENSMUSG00000043372.12) 6273 ENSMUSG00000043372.12 ENSMUSG00000043372 ENSMUST00000130341 Hexim2 protein_coding Interval_131088 chr5 135015442 135015880 + 0 NA Intergenic Intergenic -2873 ENSMUSG00000085042.8 ENSMUSG00000085042 ENSMUST00000222613 Abhd11os transcribed_unitary_pseudogene Interval_126881 chr5 96673333 96673565 + 0 NA intron (ENSMUSG00000034687.8, intron 30 of 73) protein_coding-intron (ENSMUSG00000034687.8, intron 30 of 73) 65915 ENSMUSG00000106526.1 ENSMUSG00000106526 ENSMUST00000200077 Gm42604 antisense Interval_2527 chr1 39968002 39968210 + 0 NA intron (ENSMUSG00000026074.15, intron 1 of 2) protein_coding-intron (ENSMUSG00000026074.15, intron 3 of 30) 66927 ENSMUSG00000026074.15 ENSMUSG00000026074 ENSMUST00000191657 Map4k4 protein_coding Interval_17756 chr10 79920745 79921960 + 0 NA promoter-TSS (ENSMUSG00000035781.14) protein_coding-promoter-TSS (ENSMUSG00000035781.14) -144 ENSMUSG00000035781.14 ENSMUSG00000035781 ENSMUST00000219867 R3hdm4 protein_coding Interval_82520 chr18 74877029 74877437 + 0 NA Intergenic Intergenic 29201 ENSMUSG00000088144.1 ENSMUSG00000088144 ENSMUST00000157519 Gm24559 snoRNA Interval_112407 chr4 41082128 41083751 + 0 NA Intergenic Intergenic 11509 ENSMUSG00000028435.8 ENSMUSG00000028435 ENSMUST00000154722 Aqp3 protein_coding Interval_2172 chr1 36844903 36845641 + 0 NA intron (ENSMUSG00000026116.11, intron 6 of 41) protein_coding-intron (ENSMUSG00000026116.11, intron 5 of 40) 26773 ENSMUSG00000103016.1 ENSMUSG00000103016 ENSMUST00000192008 Gm37506 TEC Interval_103594 chr3 51009498 51010562 + 0 NA Intergenic Intergenic -31219 ENSMUSG00000103652.1 ENSMUSG00000103652 ENSMUST00000194109 Gm37209 TEC Interval_73595 chr17 40904171 40905079 + 0 NA TTS (ENSMUSG00000091043.2) protein_coding-TTS (ENSMUSG00000091043.2) 9725 ENSMUSG00000091043.2 ENSMUSG00000091043 ENSMUST00000166343 Glyatl3 protein_coding Interval_115301 chr4 95577248 95577542 + 0 NA intron (ENSMUSG00000028573.18, intron 2 of 3) protein_coding-intron (ENSMUSG00000028573.18, intron 1 of 15) -15236 ENSMUSG00000093492.1 ENSMUSG00000093492 ENSMUST00000177219 Gm20651 processed_pseudogene Interval_37134 chr12 58804117 58804641 + 0 NA Intergenic Intergenic -9504 ENSMUSG00000112785.1 ENSMUSG00000112785 ENSMUST00000220177 Gm47645 lincRNA Interval_101056 chr2 174696236 174696960 + 0 NA intron (ENSMUSG00000050600.5, intron 3 of 4) protein_coding-intron (ENSMUSG00000050600.5, intron 3 of 4) 53064 ENSMUSG00000050600.5 ENSMUSG00000050600 ENSMUST00000059452 Zfp831 protein_coding Interval_48179 chr13 97020026 97022478 + 0 NA TTS (ENSMUSG00000052075.7) protein_coding-TTS (ENSMUSG00000052075.7) -5953 ENSMUSG00000113934.1 ENSMUSG00000113934 ENSMUST00000222278 Gm48609 processed_pseudogene Interval_50920 chr14 20765700 20766744 + 0 NA promoter-TSS (ENSMUSG00000021820.18) protein_coding-promoter-TSS (ENSMUSG00000021820.18) 27744 ENSMUSG00000021820.18 ENSMUSG00000021820 ENSMUST00000225635 Camk2g protein_coding Interval_108995 chr3 134238682 134240859 + 0 NA promoter-TSS (ENSMUSG00000044365.15) protein_coding-promoter-TSS (ENSMUSG00000044365.15) 813 ENSMUSG00000084564.1 ENSMUSG00000084564 ENSMUST00000122615 Mir1895 miRNA Interval_145068 chr7 29859808 29860508 + 0 NA intron (ENSMUSG00000058402.14, intron 1 of 1) protein_coding-intron (ENSMUSG00000058402.14, intron 1 of 2) 154 ENSMUSG00000058402.14 ENSMUSG00000058402 ENSMUST00000130272 Zfp420 protein_coding Interval_55373 chr14 86148753 86148950 + 0 NA Intergenic Intergenic -24072 ENSMUSG00000115217.1 ENSMUSG00000115217 ENSMUST00000227116 Gm32729 lincRNA Interval_132395 chr5 144693959 144694411 + 0 NA Intergenic Intergenic 29612 ENSMUSG00000082524.3 ENSMUSG00000082524 ENSMUST00000121256 Gm6272 processed_pseudogene Interval_16703 chr10 67110731 67111023 + 0 NA intron (ENSMUSG00000037876.17, intron 1 of 9) protein_coding-intron (ENSMUSG00000037876.17, intron 1 of 1) -73555 ENSMUSG00000019873.8 ENSMUSG00000019873 ENSMUST00000219431 Reep3 protein_coding Interval_63618 chr15 102381653 102382285 + 0 NA Intergenic Intergenic 8089 ENSMUSG00000088286.1 ENSMUSG00000088286 ENSMUST00000157661 Gm23590 snRNA Interval_169907 chr9 102866241 102867530 + 0 NA intron (ENSMUSG00000032547.12, intron 2 of 14) protein_coding-intron (ENSMUSG00000032547.12, intron 2 of 14) 15050 ENSMUSG00000110877.1 ENSMUSG00000110877 ENSMUST00000214076 Gm47427 TEC Interval_94729 chr2 93821739 93822827 + 0 NA intron (ENSMUSG00000027198.16, intron 1 of 4) protein_coding-intron (ENSMUSG00000027198.16, intron 1 of 13) 266 ENSMUSG00000027198.16 ENSMUSG00000027198 ENSMUST00000125027 Ext2 protein_coding Interval_96515 chr2 125221414 125221695 + 0 NA intron (ENSMUSG00000027202.12, intron 24 of 26) protein_coding-intron (ENSMUSG00000027202.12, intron 24 of 26) -4042 ENSMUSG00000086416.1 ENSMUSG00000086416 ENSMUST00000123574 Gm14002 antisense Interval_81594 chr18 61959971 61960557 + 0 NA intron (ENSMUSG00000045629.8, intron 1 of 16) protein_coding-intron (ENSMUSG00000045629.8, intron 1 of 16) -17695 ENSMUSG00000045629.8 ENSMUSG00000045629 ENSMUST00000236759 Sh3tc2 protein_coding Interval_30535 chr11 94989373 94991265 + 0 NA promoter-TSS (ENSMUSG00000038976.12) protein_coding-promoter-TSS (ENSMUSG00000038976.12) -2561 ENSMUSG00000038976.12 ENSMUSG00000038976 ENSMUST00000107748 Ppp1r9b protein_coding Interval_151114 chr7 118627637 118627934 + 0 NA intron (ENSMUSG00000030650.18, intron 3 of 20) protein_coding-intron (ENSMUSG00000030650.18, intron 4 of 21) 5271 ENSMUSG00000030650.18 ENSMUSG00000030650 ENSMUST00000057320 Tmc5 protein_coding Interval_9109 chr1 153661129 153662224 + 0 NA intron (ENSMUSG00000042671.12, intron 1 of 5) protein_coding-intron (ENSMUSG00000042671.12, intron 1 of 6) -3598 ENSMUSG00000042671.12 ENSMUSG00000042671 ENSMUST00000147794 Rgs8 protein_coding Interval_150813 chr7 114887755 114888136 + 0 NA Intergenic Intergenic -33374 ENSMUSG00000108683.1 ENSMUSG00000108683 ENSMUST00000206842 Gm45017 lincRNA Interval_167109 chr9 65345445 65347662 + 0 NA promoter-TSS (ENSMUSG00000041837.4) protein_coding-promoter-TSS (ENSMUSG00000041837.4) -101 ENSMUSG00000041837.4 ENSMUSG00000041837 ENSMUST00000215470 Pdcd7 protein_coding Interval_83344 chr18 84418813 84420100 + 0 NA intron (ENSMUSG00000048410.17, intron 4 of 8) protein_coding-intron (ENSMUSG00000048410.17, intron 2 of 2) 15479 ENSMUSG00000048410.17 ENSMUSG00000048410 ENSMUST00000182297 Zfp407 protein_coding Interval_97582 chr2 140118273 140118692 + 0 NA Intergenic Intergenic -8080 ENSMUSG00000083110.1 ENSMUSG00000083110 ENSMUST00000117344 Gm14073 processed_pseudogene Interval_146071 chr7 43662651 43662916 + 0 NA Intergenic Intergenic -3430 ENSMUSG00000030474.9 ENSMUSG00000030474 ENSMUST00000206421 Siglece protein_coding Interval_12426 chr1 193363570 193364391 + 0 NA intron (ENSMUSG00000016179.11, intron 1 of 11) protein_coding-intron (ENSMUSG00000016179.11, intron 1 of 12) -2860 ENSMUSG00000103895.1 ENSMUSG00000103895 ENSMUST00000191875 Gm37942 TEC Interval_5961 chr1 93550678 93551368 + 0 NA intron (ENSMUSG00000034066.13, intron 2 of 12) protein_coding-intron (ENSMUSG00000034066.13, intron 2 of 26) 19208 ENSMUSG00000103854.1 ENSMUSG00000103854 ENSMUST00000194919 Gm37250 TEC Interval_52243 chr14 40974953 40976081 + 0 NA Intergenic Intergenic 29016 ENSMUSG00000021792.15 ENSMUSG00000021792 ENSMUST00000152837 Prxl2a protein_coding Interval_98616 chr2 153586118 153587139 + 0 NA Intergenic Intergenic 46103 ENSMUSG00000056941.17 ENSMUSG00000056941 ENSMUST00000109782 Commd7 protein_coding Interval_173663 chrX 101636575 101637546 + 0 NA Intergenic Intergenic -3080 ENSMUSG00000034160.13 ENSMUSG00000034160 ENSMUST00000147635 Ogt protein_coding Interval_35065 chr12 17010816 17012551 + 0 NA promoter-TSS (ENSMUSG00000071398.8) protein_coding-promoter-TSS (ENSMUSG00000071398.8) -129 ENSMUSG00000071398.8 ENSMUSG00000071398 ENSMUST00000189479 2410004P03Rik protein_coding Interval_58174 chr15 30312892 30313456 + 0 NA intron (ENSMUSG00000022240.10, intron 1 of 2) protein_coding-intron (ENSMUSG00000022240.10, intron 1 of 22) -115670 ENSMUSG00000115073.1 ENSMUSG00000115073 ENSMUST00000226263 Gm49283 TEC Interval_163331 chr9 20913167 20914010 + 0 NA TTS (ENSMUSG00000099147.1) miRNA-TTS (ENSMUSG00000099147.1) 576 ENSMUSG00000099147.1 ENSMUSG00000099147 ENSMUST00000184490 Mir7081 miRNA Interval_52064 chr14 34994845 34995059 + 0 NA intron (ENSMUSG00000041078.7, intron 3 of 15) protein_coding-intron (ENSMUSG00000041078.7, intron 3 of 15) 100343 ENSMUSG00000065481.1 ENSMUSG00000065481 ENSMUST00000083547 Mir346 miRNA Interval_161548 chr8 121124707 121125877 + 0 NA intron (ENSMUSG00000092329.1, intron 1 of 15) protein_coding-intron (ENSMUSG00000092329.1, intron 1 of 15) -2648 ENSMUSG00000097084.1 ENSMUSG00000097084 ENSMUST00000181609 Foxl1 protein_coding Interval_98828 chr2 155364758 155365536 + 0 NA Intergenic Intergenic -7723 ENSMUSG00000038383.16 ENSMUSG00000038383 ENSMUST00000124419 Pigu protein_coding Interval_114170 chr4 65628392 65628610 + 0 NA intron (ENSMUSG00000028373.16, intron 15 of 21) protein_coding-intron (ENSMUSG00000028373.16, intron 16 of 22) 23252 ENSMUSG00000051675.13 ENSMUSG00000051675 ENSMUST00000156922 Trim32 protein_coding Interval_95799 chr2 116593182 116594328 + 0 NA Intergenic Intergenic -65265 ENSMUSG00000081787.1 ENSMUSG00000081787 ENSMUST00000120190 Gm13991 processed_pseudogene Interval_6891 chr1 120400909 120401591 + 0 NA Intergenic Intergenic -34555 ENSMUSG00000101275.1 ENSMUSG00000101275 ENSMUST00000186237 1700012E03Rik lincRNA Interval_152224 chr7 130747223 130747412 + 0 NA intron (ENSMUSG00000030852.18, intron 11 of 17) protein_coding-intron (ENSMUSG00000030852.18, intron 11 of 17) -19636 ENSMUSG00000109104.1 ENSMUSG00000109104 ENSMUST00000208365 Gm6108 processed_pseudogene Interval_33000 chr11 113601538 113602952 + 0 NA intron (ENSMUSG00000041654.15, intron 1 of 4) protein_coding-intron (ENSMUSG00000041654.15, intron 1 of 2) -17097 ENSMUSG00000047904.6 ENSMUSG00000047904 ENSMUST00000067591 Sstr2 protein_coding Interval_1179 chr1 16650420 16651749 + 0 NA intron (ENSMUSG00000079658.9, intron 1 of 1) protein_coding-intron (ENSMUSG00000079658.9, intron 1 of 3) 5958 ENSMUSG00000079658.9 ENSMUSG00000079658 ENSMUST00000191535 Eloc protein_coding Interval_47877 chr13 94080198 94081438 + 0 NA intron (ENSMUSG00000045312.12, intron 1 of 1) protein_coding-intron (ENSMUSG00000045312.12, intron 1 of 3) 26975 ENSMUSG00000114174.1 ENSMUSG00000114174 ENSMUST00000223240 Cycs-ps3 processed_pseudogene Interval_91653 chr2 45776572 45777646 + 0 NA Intergenic Intergenic -25425 ENSMUSG00000086830.1 ENSMUSG00000086830 ENSMUST00000145568 Gm13467 lincRNA Interval_129437 chr5 120163713 120164047 + 0 NA intron (ENSMUSG00000029594.12, intron 1 of 3) protein_coding-intron (ENSMUSG00000029594.12, intron 21 of 23) -11845 ENSMUSG00000029594.12 ENSMUSG00000029594 ENSMUST00000202788 Rbm19 protein_coding Interval_54032 chr14 64632211 64633610 + 0 NA Intergenic Intergenic -19650 ENSMUSG00000060012.9 ENSMUSG00000060012 ENSMUST00000224677 Kif13b protein_coding Interval_131210 chr5 135832644 135833205 + 0 NA intron (ENSMUSG00000039860.19, intron 1 of 14) protein_coding-intron (ENSMUSG00000039860.19, intron 1 of 15) 4448 ENSMUSG00000094486.1 ENSMUSG00000094486 ENSMUST00000175494 Gm23268 miRNA Interval_43347 chr13 29494195 29494672 + 0 NA intron (ENSMUSG00000006191.17, intron 1 of 2) protein_coding-intron (ENSMUSG00000006191.17, intron 11 of 15) 23021 ENSMUSG00000006191.17 ENSMUSG00000006191 ENSMUST00000129231 Cdkal1 protein_coding Interval_22496 chr11 11131451 11132472 + 0 NA TTS (ENSMUSG00000050830.17) protein_coding-TTS (ENSMUSG00000050830.17) -8553 ENSMUSG00000088861.1 ENSMUSG00000088861 ENSMUST00000158236 Gm23065 rRNA Interval_155231 chr8 28427945 28428199 + 0 NA Intergenic Intergenic -92604 ENSMUSG00000110322.1 ENSMUSG00000110322 ENSMUST00000211297 Gm8110 lincRNA Interval_87306 chr19 47517159 47519364 + 0 NA intron (ENSMUSG00000042694.17, intron 4 of 9) protein_coding-intron (ENSMUSG00000042694.17, intron 4 of 9) 5279 ENSMUSG00000097990.1 ENSMUSG00000097990 ENSMUST00000182109 Gm19557 antisense Interval_128030 chr5 110376395 110379121 + 0 NA exon (ENSMUSG00000043323.17, exon 9 of 17) protein_coding-exon (ENSMUSG00000043323.17, exon 9 of 17) 23600 ENSMUSG00000072754.9 ENSMUSG00000072754 ENSMUST00000190963 Lrcol1 protein_coding Interval_14317 chr10 30787920 30788135 + 0 NA intron (ENSMUSG00000039697.16, intron 1 of 6) protein_coding-intron (ENSMUSG00000039697.16, intron 1 of 15) -5756 ENSMUSG00000110744.1 ENSMUSG00000110744 ENSMUST00000214944 Gm5171 processed_pseudogene Interval_33743 chr11 118236783 118237241 + 0 NA intron (ENSMUSG00000017132.17, intron 1 of 12) protein_coding-intron (ENSMUSG00000017132.17, intron 1 of 12) -24270 ENSMUSG00000017132.17 ENSMUSG00000017132 ENSMUST00000151165 Cyth1 protein_coding Interval_68446 chr16 76920289 76920500 + 0 NA intron (ENSMUSG00000100857.2, intron 1 of 7) lincRNA-intron (ENSMUSG00000100857.2, intron 1 of 7) -21222 ENSMUSG00000116807.1 ENSMUSG00000116807 ENSMUST00000231248 Gm7501 processed_pseudogene Interval_74899 chr17 57166922 57167663 + 0 NA Intergenic Intergenic -17515 ENSMUSG00000019489.7 ENSMUSG00000019489 ENSMUST00000019633 Cd70 protein_coding Interval_1881 chr1 34262992 34263400 + 0 NA intron (ENSMUSG00000026131.20, intron 14 of 22) protein_coding-intron (ENSMUSG00000026131.20, intron 69 of 97) 7932 ENSMUSG00000103001.1 ENSMUSG00000103001 ENSMUST00000194920 A930005N03Rik TEC Interval_158110 chr8 78801268 78803222 + 0 NA Intergenic Intergenic 10969 ENSMUSG00000031683.16 ENSMUSG00000031683 ENSMUST00000146824 Lsm6 protein_coding Interval_14885 chr10 40838567 40838952 + 0 NA intron (ENSMUSG00000038446.8, intron 12 of 14) protein_coding-intron (ENSMUSG00000038446.8, intron 12 of 14) 7178 ENSMUSG00000038446.8 ENSMUSG00000038446 ENSMUST00000215441 Cdc40 protein_coding Interval_169834 chr9 102352341 102354977 + 0 NA intron (ENSMUSG00000032537.15, intron 1 of 4) protein_coding-intron (ENSMUSG00000032537.15, intron 1 of 15) -19459 ENSMUSG00000088138.1 ENSMUSG00000088138 ENSMUST00000157513 Gm22894 snRNA Interval_38127 chr12 75824870 75825103 + 0 NA intron (ENSMUSG00000063450.14, intron 1 of 12) protein_coding-intron (ENSMUSG00000063450.14, intron 1 of 115) 6636 ENSMUSG00000063450.14 ENSMUSG00000063450 ENSMUST00000151286 Syne2 protein_coding Interval_166443 chr9 59531483 59532740 + 0 NA intron (ENSMUSG00000049526.8, intron 1 of 3) protein_coding-intron (ENSMUSG00000049526.8, intron 1 of 3) -6653 ENSMUSG00000049526.8 ENSMUSG00000049526 ENSMUST00000216061 Tmem202 protein_coding Interval_2336 chr1 38156230 38156670 + 0 NA intron (ENSMUSG00000102716.1, intron 3 of 5) lincRNA-intron (ENSMUSG00000102716.1, intron 3 of 5) 24367 ENSMUSG00000102716.1 ENSMUSG00000102716 ENSMUST00000194892 Gm5099 lincRNA Interval_137741 chr6 81965303 81966373 + 0 NA promoter-TSS (ENSMUSG00000030045.10) protein_coding-promoter-TSS (ENSMUSG00000030045.10) -197 ENSMUSG00000030045.10 ENSMUSG00000030045 ENSMUST00000148025 Mrpl19 protein_coding Interval_85394 chr19 25457508 25457792 + 0 NA Intergenic Intergenic -3587 ENSMUSG00000064843.1 ENSMUSG00000064843 ENSMUST00000082909 Gm26207 snRNA Interval_146980 chr7 56938163 56938450 + 0 NA intron (ENSMUSG00000055026.13, intron 5 of 9) protein_coding-intron (ENSMUSG00000055026.13, intron 5 of 9) 59295 ENSMUSG00000108556.1 ENSMUSG00000108556 ENSMUST00000206902 Gm17987 processed_pseudogene Interval_157814 chr8 73881592 73881869 + 0 NA Intergenic Intergenic 10037 ENSMUSG00000110609.1 ENSMUSG00000110609 ENSMUST00000212607 Gm7948 processed_pseudogene Interval_41927 chr13 4608557 4609431 + 0 NA promoter-TSS (ENSMUSG00000094772.2) transcribed_processed_pseudogene-promoter-TSS (ENSMUSG00000094772.2) 124 ENSMUSG00000045410.18 ENSMUSG00000045410 ENSMUST00000220936 Akr1e1 protein_coding Interval_128091 chr5 110814394 110815151 + 0 NA Intergenic Intergenic -4719 ENSMUSG00000029512.11 ENSMUSG00000029512 ENSMUST00000198470 Ulk1 protein_coding Interval_156026 chr8 42722083 42722417 + 0 NA Intergenic Intergenic -20557 ENSMUSG00000088312.1 ENSMUSG00000088312 ENSMUST00000157687 Gm26181 snRNA Interval_35500 chr12 23122475 23123331 + 0 NA Intergenic Intergenic -7319 ENSMUSG00000113174.1 ENSMUSG00000113174 ENSMUST00000222008 Gm9292 unprocessed_pseudogene Interval_135714 chr6 44420069 44420743 + 0 NA Intergenic Intergenic 247029 ENSMUSG00000107953.1 ENSMUSG00000107953 ENSMUST00000204867 Gm44211 processed_pseudogene Interval_141814 chr6 134667694 134667983 + 0 NA intron (ENSMUSG00000042992.15, intron 2 of 2) protein_coding-intron (ENSMUSG00000042992.15, intron 2 of 3) -22021 ENSMUSG00000108166.1 ENSMUSG00000108166 ENSMUST00000203231 Gm44017 sense_intronic Interval_21867 chr11 4843336 4843921 + 0 NA intron (ENSMUSG00000009073.16, intron 1 of 1) protein_coding-intron (ENSMUSG00000009073.16, intron 1 of 16) 5497 ENSMUSG00000009073.16 ENSMUSG00000009073 ENSMUST00000172305 Nf2 protein_coding Interval_96335 chr2 121714963 121715169 + 0 NA intron (ENSMUSG00000027238.17, intron 1 of 7) protein_coding-intron (ENSMUSG00000027238.17, intron 1 of 13) -3464 ENSMUSG00000084244.1 ENSMUSG00000084244 ENSMUST00000118165 Gm14020 processed_pseudogene Interval_137546 chr6 73040113 73040442 + 0 NA intron (ENSMUSG00000052861.13, intron 64 of 75) protein_coding-intron (ENSMUSG00000052861.13, intron 65 of 76) 28234 ENSMUSG00000107546.1 ENSMUSG00000107546 ENSMUST00000204577 Gm20560 antisense Interval_3570 chr1 59650861 59651073 + 0 NA intron (ENSMUSG00000026021.15, intron 2 of 2) protein_coding-intron (ENSMUSG00000026021.15, intron 2 of 4) -2896 ENSMUSG00000103821.1 ENSMUSG00000103821 ENSMUST00000192922 D430013B06Rik TEC Interval_149819 chr7 101811420 101811820 + 0 NA Intergenic Intergenic -9126 ENSMUSG00000007946.11 ENSMUSG00000007946 ENSMUST00000209878 Phox2a protein_coding Interval_2994 chr1 51940766 51941328 + 0 NA exon (ENSMUSG00000072324.4, exon 1 of 1) processed_pseudogene-exon (ENSMUSG00000072324.4, exon 1 of 1) 214 ENSMUSG00000072324.4 ENSMUSG00000072324 ENSMUST00000097103 Gm8420 processed_pseudogene Interval_30125 chr11 89424285 89425596 + 0 NA intron (ENSMUSG00000047773.15, intron 17 of 21) protein_coding-intron (ENSMUSG00000047773.15, intron 15 of 16) 122217 ENSMUSG00000085798.1 ENSMUSG00000085798 ENSMUST00000140754 Gm2018 lincRNA Interval_3301 chr1 55960425 55960948 + 0 NA promoter-TSS (ENSMUSG00000099950.1) lincRNA-promoter-TSS (ENSMUSG00000099950.1) 70 ENSMUSG00000102491.1 ENSMUSG00000102491 ENSMUST00000195320 Gm36986 TEC Interval_151143 chr7 118796257 118796590 + 0 NA intron (ENSMUSG00000030982.19, intron 1 of 8) protein_coding-intron (ENSMUSG00000030982.19, intron 11 of 23) 11280 ENSMUSG00000109379.1 ENSMUSG00000109379 ENSMUST00000207311 Gm44550 TEC Interval_7842 chr1 134082922 134083445 + 0 NA Intergenic Intergenic -4063 ENSMUSG00000020423.6 ENSMUSG00000020423 ENSMUST00000020692 Btg2 protein_coding Interval_151912 chr7 127494836 127495412 + 0 NA Intergenic Intergenic 4282 ENSMUSG00000105918.1 ENSMUSG00000105918 ENSMUST00000196180 Gm47278 miRNA Interval_108462 chr3 127428249 127429093 + 0 NA intron (ENSMUSG00000032826.19, intron 1 of 1) protein_coding-intron (ENSMUSG00000032826.19, intron 1 of 1) -34965 ENSMUSG00000105822.1 ENSMUSG00000105822 ENSMUST00000199858 Gm42969 TEC Interval_35358 chr12 21026091 21026469 + 0 NA intron (ENSMUSG00000116627.1, intron 3 of 3) protein_coding-intron (ENSMUSG00000052632.16, intron 1 of 9) -16679 ENSMUSG00000092229.3 ENSMUSG00000092229 ENSMUST00000174304 Gm5977 transcribed_unprocessed_pseudogene Interval_39595 chr12 91326031 91326328 + 0 NA intron (ENSMUSG00000061533.16, intron 2 of 3) protein_coding-intron (ENSMUSG00000061533.16, intron 9 of 13) 2510 ENSMUSG00000113239.1 ENSMUSG00000113239 ENSMUST00000222339 Gm18388 processed_pseudogene Interval_146195 chr7 44632580 44633679 + 0 NA promoter-TSS (ENSMUSG00000030739.18) protein_coding-promoter-TSS (ENSMUSG00000030739.18) -344 ENSMUSG00000030739.18 ENSMUSG00000030739 ENSMUST00000208131 Myh14 protein_coding Interval_60238 chr15 68927739 68929595 + 0 NA promoter-TSS (ENSMUSG00000022332.8) protein_coding-promoter-TSS (ENSMUSG00000022332.8) -30 ENSMUSG00000022332.8 ENSMUSG00000022332 ENSMUST00000230073 Khdrbs3 protein_coding Interval_142620 chr6 144329391 144329723 + 0 NA intron (ENSMUSG00000041540.16, intron 4 of 6) protein_coding-intron (ENSMUSG00000041540.16, intron 4 of 13) -119989 ENSMUSG00000041540.16 ENSMUSG00000041540 ENSMUST00000150087 Sox5 protein_coding Interval_50811 chr14 19984594 19985427 + 0 NA Intergenic Intergenic -7826 ENSMUSG00000043004.13 ENSMUSG00000043004 ENSMUST00000161247 Gng2 protein_coding Interval_125555 chr5 70762420 70762714 + 0 NA intron (ENSMUSG00000001260.10, intron 8 of 8) protein_coding-intron (ENSMUSG00000001260.10, intron 8 of 8) 79747 ENSMUSG00000001260.10 ENSMUSG00000001260 ENSMUST00000200126 Gabrg1 protein_coding Interval_158223 chr8 80035349 80036010 + 0 NA intron (ENSMUSG00000064325.4, intron 4 of 12) protein_coding-intron (ENSMUSG00000064325.4, intron 4 of 12) -45330 ENSMUSG00000064325.4 ENSMUSG00000064325 ENSMUST00000079038 Hhip protein_coding Interval_43503 chr13 31974713 31974975 + 0 NA intron (ENSMUSG00000038372.14, intron 7 of 10) protein_coding-intron (ENSMUSG00000038372.14, intron 7 of 10) 3758 ENSMUSG00000113935.1 ENSMUSG00000113935 ENSMUST00000221737 Gm35732 antisense Interval_104058 chr3 57798361 57798562 + 0 NA intron (ENSMUSG00000036503.13, intron 5 of 7) protein_coding-intron (ENSMUSG00000036503.13, intron 5 of 9) 11796 ENSMUSG00000106006.1 ENSMUSG00000106006 ENSMUST00000198536 Gm17951 processed_pseudogene Interval_123844 chr5 35907746 35909644 + 0 NA intron (ENSMUSG00000029094.12, intron 1 of 16) protein_coding-intron (ENSMUSG00000029094.12, intron 1 of 16) -9202 ENSMUSG00000082692.2 ENSMUSG00000082692 ENSMUST00000119066 H2af-ps processed_pseudogene Interval_130051 chr5 123933684 123934567 + 0 NA exon (ENSMUSG00000061882.12, exon 2 of 13) protein_coding-exon (ENSMUSG00000061882.12, exon 2 of 13) 6707 ENSMUSG00000105875.1 ENSMUSG00000105875 ENSMUST00000166129 Gm43518 protein_coding Interval_160121 chr8 106586642 106587374 + 0 NA promoter-TSS (ENSMUSG00000099139.1) lincRNA-promoter-TSS (ENSMUSG00000099139.1) -135 ENSMUSG00000099139.1 ENSMUSG00000099139 ENSMUST00000183365 1110028F18Rik lincRNA Interval_147436 chr7 67199144 67200501 + 0 NA Intergenic Intergenic 19722 ENSMUSG00000109273.1 ENSMUSG00000109273 ENSMUST00000208327 Gm45101 processed_pseudogene Interval_85499 chr19 27555104 27556028 + 0 NA Intergenic Intergenic 43058 ENSMUSG00000118072.1 ENSMUSG00000118072 ENSMUST00000235994 Gm50101 processed_pseudogene Interval_78541 chr18 14610292 14610911 + 0 NA Intergenic Intergenic 26805 ENSMUSG00000037013.17 ENSMUSG00000037013 ENSMUST00000234544 Ss18 protein_coding Interval_46981 chr13 73920478 73920862 + 0 NA intron (ENSMUSG00000021569.10, intron 1 of 6) protein_coding-intron (ENSMUSG00000021569.10, intron 7 of 12) 4040 ENSMUSG00000095943.1 ENSMUSG00000095943 ENSMUST00000175516 Gm25197 miRNA Interval_169979 chr9 103387216 103387436 + 0 NA Intergenic Intergenic -21843 ENSMUSG00000101419.1 ENSMUSG00000101419 ENSMUST00000188687 Gm29600 processed_pseudogene Interval_165213 chr9 45388532 45388877 + 0 NA intron (ENSMUSG00000066705.7, intron 1 of 7) protein_coding-intron (ENSMUSG00000066705.7, intron 1 of 7) -18468 ENSMUSG00000059412.7 ENSMUSG00000059412 ENSMUST00000217549 Fxyd2 protein_coding Interval_123619 chr5 33883739 33884525 + 0 NA intron (ENSMUSG00000057406.16, intron 6 of 12) protein_coding-intron (ENSMUSG00000057406.16, intron 14 of 20) 5917 ENSMUSG00000057406.16 ENSMUSG00000057406 ENSMUST00000201572 Nsd2 protein_coding Interval_100668 chr2 170975502 170975926 + 0 NA Intergenic Intergenic -20890 ENSMUSG00000080955.1 ENSMUSG00000080955 ENSMUST00000117955 Gm14263 processed_pseudogene Interval_92434 chr2 59697138 59699418 + 0 NA intron (ENSMUSG00000035168.16, intron 1 of 25) protein_coding-intron (ENSMUSG00000035168.16, intron 2 of 26) -107790 ENSMUSG00000035168.16 ENSMUSG00000035168 ENSMUST00000147650 Tanc1 protein_coding Interval_107532 chr3 108333006 108333214 + 0 NA intron (ENSMUSG00000068747.14, intron 7 of 20) protein_coding-intron (ENSMUSG00000068747.14, intron 7 of 19) -28441 ENSMUSG00000078601.4 ENSMUSG00000078601 ENSMUST00000125412 Gm12525 lincRNA Interval_114094 chr4 63403205 63403672 + 0 NA promoter-TSS (ENSMUSG00000039158.11) protein_coding-promoter-TSS (ENSMUSG00000039158.11) 22080 ENSMUSG00000086953.1 ENSMUSG00000086953 ENSMUST00000144095 Aknaos antisense Interval_146091 chr7 43816290 43817975 + 0 NA TTS (ENSMUSG00000030713.6) protein_coding-TTS (ENSMUSG00000030713.6) 5838 ENSMUSG00000030713.6 ENSMUSG00000030713 ENSMUST00000032955 Klk7 protein_coding Interval_95343 chr2 106805446 106806351 + 0 NA intron (ENSMUSG00000016386.15, intron 4 of 6) protein_coding-intron (ENSMUSG00000016386.15, intron 4 of 6) -3437 ENSMUSG00000105886.1 ENSMUSG00000105886 ENSMUST00000200346 Gm22813 scaRNA Interval_81343 chr18 58599124 58599318 + 0 NA intron (ENSMUSG00000024600.8, intron 5 of 9) protein_coding-intron (ENSMUSG00000024600.8, intron 5 of 9) 16268 ENSMUSG00000077243.1 ENSMUSG00000077243 ENSMUST00000104055 Gm23270 snoRNA Interval_39482 chr12 88345151 88345348 + 0 NA Intergenic Intergenic -2560 ENSMUSG00000113826.1 ENSMUSG00000113826 ENSMUST00000223014 Gm48577 processed_pseudogene Interval_29975 chr11 88481219 88481941 + 0 NA intron (ENSMUSG00000069769.13, intron 1 of 5) protein_coding-intron (ENSMUSG00000069769.13, intron 6 of 13) -48066 ENSMUSG00000084411.2 ENSMUSG00000084411 ENSMUST00000120278 Gm11510 processed_pseudogene Interval_120849 chr4 151012024 151013336 + 0 NA exon (ENSMUSG00000028957.12, exon 17 of 21) protein_coding-exon (ENSMUSG00000028957.12, exon 17 of 21) 15583 ENSMUSG00000028963.1 ENSMUSG00000028963 ENSMUST00000030803 Uts2 protein_coding Interval_44866 chr13 49205072 49206576 + 0 NA intron (ENSMUSG00000037960.11, intron 3 of 4) protein_coding-intron (ENSMUSG00000037960.11, intron 2 of 5) -1708 ENSMUSG00000037960.11 ENSMUSG00000037960 ENSMUST00000223159 Card19 protein_coding Interval_104930 chr3 79101653 79102025 + 0 NA intron (ENSMUSG00000062232.14, intron 9 of 29) protein_coding-intron (ENSMUSG00000062232.14, intron 3 of 23) -94535 ENSMUSG00000064693.1 ENSMUSG00000064693 ENSMUST00000082759 Gm24150 snRNA Interval_136698 chr6 58104691 58105528 + 0 NA Intergenic Intergenic 3058 ENSMUSG00000107530.1 ENSMUSG00000107530 ENSMUST00000204747 Vmn1r-ps16 unprocessed_pseudogene Interval_115072 chr4 89272641 89273910 + 0 NA promoter-TSS (ENSMUSG00000087659.7) lincRNA-promoter-TSS (ENSMUSG00000087659.7) -688 ENSMUSG00000087659.7 ENSMUSG00000087659 ENSMUST00000127174 Gm12606 lincRNA Interval_163703 chr9 24672298 24672706 + 0 NA intron (ENSMUSG00000085576.3, intron 4 of 21) protein_coding-intron (ENSMUSG00000085576.3, intron 4 of 21) 23791 ENSMUSG00000085576.3 ENSMUSG00000085576 ENSMUST00000133010 Dpy19l2 protein_coding Interval_59361 chr15 51910254 51910775 + 0 NA Intergenic Intergenic 13427 ENSMUSG00000115616.1 ENSMUSG00000115616 ENSMUST00000226818 Gm48923 lincRNA Interval_148096 chr7 79201314 79201546 + 0 NA Intergenic Intergenic -53199 ENSMUSG00000030605.15 ENSMUSG00000030605 ENSMUST00000206844 Mfge8 protein_coding Interval_78704 chr18 18201783 18202197 + 0 NA intron (ENSMUSG00000117574.1, intron 5 of 7) lincRNA-intron (ENSMUSG00000117574.1, intron 5 of 7) 42167 ENSMUSG00000117574.1 ENSMUSG00000117574 ENSMUST00000234831 Gm50084 lincRNA Interval_137294 chr6 71133671 71133978 + 0 NA intron (ENSMUSG00000054474.15, intron 4 of 5) protein_coding-intron (ENSMUSG00000054474.15, intron 6 of 9) -1852 ENSMUSG00000054474.15 ENSMUSG00000054474 ENSMUST00000170455 Thnsl2 protein_coding Interval_64784 chr16 15714992 15715217 + 0 NA intron (ENSMUSG00000022672.8, intron 35 of 85) protein_coding-intron (ENSMUSG00000022672.8, intron 35 of 85) -35819 ENSMUSG00000116118.1 ENSMUSG00000116118 ENSMUST00000229449 Gm49511 processed_pseudogene Interval_134688 chr6 30390406 30391381 + 0 NA promoter-TSS (ENSMUSG00000039130.18) protein_coding-promoter-TSS (ENSMUSG00000039130.18) 11792 ENSMUSG00000065662.1 ENSMUSG00000065662 ENSMUST00000083728 n-R5s161 rRNA Interval_88337 chr2 4112905 4113721 + 0 NA intron (ENSMUSG00000026657.17, intron 2 of 24) protein_coding-intron (ENSMUSG00000026657.17, intron 1 of 1) 9436 ENSMUSG00000102517.1 ENSMUSG00000102517 ENSMUST00000195785 Gm38085 sense_intronic Interval_93667 chr2 75695885 75696575 + 0 NA intron (ENSMUSG00000015839.6, intron 1 of 1) protein_coding-intron (ENSMUSG00000015839.6, intron 1 of 4) 8259 ENSMUSG00000015839.6 ENSMUSG00000015839 ENSMUST00000152371 Nfe2l2 protein_coding Interval_10888 chr1 176633966 176634651 + 0 NA Intergenic Intergenic 8250 ENSMUSG00000103471.1 ENSMUSG00000103471 ENSMUST00000193453 Gm17966 processed_pseudogene Interval_31065 chr11 97958556 97959512 + 0 NA intron (ENSMUSG00000017417.14, intron 2 of 13) protein_coding-intron (ENSMUSG00000017417.14, intron 2 of 13) -9758 ENSMUSG00000082715.1 ENSMUSG00000082715 ENSMUST00000118176 Gm11633 processed_pseudogene Interval_137196 chr6 69758865 69759055 + 0 NA Intergenic Intergenic 6062 ENSMUSG00000076564.2 ENSMUSG00000076564 ENSMUST00000103365 Igkv12-46 IG_V_gene Interval_35004 chr12 16583978 16584451 + 0 NA intron (ENSMUSG00000020593.16, intron 2 of 21) protein_coding-intron (ENSMUSG00000020593.16, intron 1 of 20) 26752 ENSMUSG00000020593.16 ENSMUSG00000020593 ENSMUST00000221146 Lpin1 protein_coding Interval_63056 chr15 98864092 98864536 + 0 NA intron (ENSMUSG00000048154.17, intron 10 of 54) protein_coding-intron (ENSMUSG00000048154.17, intron 10 of 54) 8299 ENSMUSG00000115980.1 ENSMUSG00000115980 ENSMUST00000230986 Gm49437 TEC Interval_95583 chr2 112484804 112485224 + 0 NA Intergenic Intergenic -4245 ENSMUSG00000074939.3 ENSMUSG00000074939 ENSMUST00000099589 Chrm5 protein_coding Interval_23152 chr11 20194881 20195831 + 0 NA promoter-TSS (ENSMUSG00000084442.1) snRNA-promoter-TSS (ENSMUSG00000084442.1) -621 ENSMUSG00000084442.1 ENSMUSG00000084442 ENSMUST00000122493 Gm26253 snRNA Interval_161234 chr8 118953615 118954291 + 0 NA intron (ENSMUSG00000031841.19, intron 5 of 7) protein_coding-intron (ENSMUSG00000031841.19, intron 5 of 13) -197512 ENSMUSG00000031841.19 ENSMUSG00000031841 ENSMUST00000151842 Cdh13 protein_coding Interval_170781 chr9 110722885 110723215 + 0 NA intron (ENSMUSG00000032492.14, intron 15 of 15) protein_coding-intron (ENSMUSG00000032492.14, intron 13 of 13) 13039 ENSMUSG00000019659.8 ENSMUSG00000019659 ENSMUST00000196542 Ccdc12 protein_coding Interval_43779 chr13 36360511 36360810 + 0 NA intron (ENSMUSG00000021420.13, intron 1 of 2) protein_coding-intron (ENSMUSG00000021420.13, intron 5 of 6) 33702 ENSMUSG00000021420.13 ENSMUSG00000021420 ENSMUST00000225048 Fars2 protein_coding Interval_96898 chr2 129279815 129280060 + 0 NA intron (ENSMUSG00000048327.6, intron 5 of 8) protein_coding-intron (ENSMUSG00000048327.6, intron 5 of 8) 17275 ENSMUSG00000048327.6 ENSMUSG00000048327 ENSMUST00000052708 Ckap2l protein_coding Interval_73170 chr17 35241018 35243230 + 0 NA promoter-TSS (ENSMUSG00000075770.1) snoRNA-promoter-TSS (ENSMUSG00000075770.1) 128 ENSMUSG00000019432.15 ENSMUSG00000019432 ENSMUST00000172549 Ddx39b protein_coding Interval_173149 chrX 73566327 73566675 + 0 NA intron (ENSMUSG00000031376.15, intron 21 of 21) protein_coding-intron (ENSMUSG00000031376.15, intron 20 of 20) 17622 ENSMUSG00000118463.1 ENSMUSG00000118463 ENSMUST00000238737 Gm9730 unitary_pseudogene Interval_169563 chr9 99152479 99154394 + 0 NA Intergenic Intergenic -13511 ENSMUSG00000032462.14 ENSMUSG00000032462 ENSMUST00000124723 Pik3cb protein_coding Interval_87439 chr19 50731489 50731698 + 0 NA intron (ENSMUSG00000097446.1, intron 1 of 7) antisense-intron (ENSMUSG00000097446.1, intron 1 of 7) -17908 ENSMUSG00000117758.1 ENSMUSG00000117758 ENSMUST00000235421 Gm50302 lincRNA Interval_72704 chr17 31644417 31645119 + 0 NA promoter-TSS (ENSMUSG00000118161.1) processed_pseudogene-promoter-TSS (ENSMUSG00000118161.1) 11 ENSMUSG00000118161.1 ENSMUSG00000118161 ENSMUST00000236305 Rps2-ps8 processed_pseudogene Interval_173692 chrX 101993590 101994268 + 0 NA intron (ENSMUSG00000079481.11, intron 1 of 1) protein_coding-intron (ENSMUSG00000079481.11, intron 1 of 7) 19223 ENSMUSG00000098968.1 ENSMUSG00000098968 ENSMUST00000184273 Gm27843 miRNA Interval_157224 chr8 68159902 68160174 + 0 NA intron (ENSMUSG00000030465.19, intron 2 of 2) protein_coding-intron (ENSMUSG00000030465.19, intron 1 of 16) 51989 ENSMUSG00000030465.19 ENSMUSG00000030465 ENSMUST00000178529 Psd3 protein_coding Interval_52542 chr14 47388093 47388314 + 0 NA TTS (ENSMUSG00000037544.14) protein_coding-TTS (ENSMUSG00000037544.14) 14287 ENSMUSG00000050335.17 ENSMUSG00000050335 ENSMUST00000146468 Lgals3 protein_coding Interval_164873 chr9 42688066 42688736 + 0 NA intron (ENSMUSG00000032017.14, intron 3 of 20) protein_coding-intron (ENSMUSG00000032017.14, intron 1 of 18) -167570 ENSMUSG00000093745.1 ENSMUSG00000093745 ENSMUST00000176676 Gm24420 misc_RNA Interval_50712 chr14 18462529 18463845 + 0 NA Intergenic Intergenic 17312 ENSMUSG00000065858.1 ENSMUSG00000065858 ENSMUST00000083924 Gm22350 snRNA Interval_154077 chr8 12510167 12510941 + 0 NA Intergenic Intergenic 7655 ENSMUSG00000109582.1 ENSMUSG00000109582 ENSMUST00000211062 4933439N14Rik lincRNA Interval_133374 chr6 4184695 4184943 + 0 NA Intergenic Intergenic 69515 ENSMUSG00000108139.1 ENSMUSG00000108139 ENSMUST00000204376 Gm44055 processed_pseudogene Interval_75954 chr17 73722868 73723591 + 0 NA Intergenic Intergenic -13163 ENSMUSG00000024064.14 ENSMUSG00000024064 ENSMUST00000146565 Galnt14 protein_coding Interval_111372 chr4 19925250 19925449 + 0 NA Intergenic Intergenic -8409 ENSMUSG00000028238.6 ENSMUSG00000028238 ENSMUST00000128605 Atp6v0d2 protein_coding Interval_144454 chr7 25248558 25251720 + 0 NA intron (ENSMUSG00000040857.15, intron 1 of 2) protein_coding-intron (ENSMUSG00000040857.15, intron 1 of 3) 591 ENSMUSG00000040857.15 ENSMUSG00000040857 ENSMUST00000116343 Erf protein_coding Interval_126160 chr5 80508858 80509335 + 0 NA Intergenic Intergenic -384558 ENSMUSG00000065235.1 ENSMUSG00000065235 ENSMUST00000083301 Gm22974 snRNA Interval_143127 chr7 3483420 3483674 + 0 NA Intergenic Intergenic 7532 ENSMUSG00000107480.1 ENSMUSG00000107480 ENSMUST00000203093 Gm44165 TEC Interval_61932 chr15 85327615 85328726 + 0 NA Intergenic Intergenic -8075 ENSMUSG00000016541.10 ENSMUSG00000016541 ENSMUST00000163242 Atxn10 protein_coding Interval_113645 chr4 57237933 57238231 + 0 NA intron (ENSMUSG00000038764.14, intron 12 of 25) protein_coding-intron (ENSMUSG00000038764.14, intron 12 of 25) -62014 ENSMUSG00000085654.1 ENSMUSG00000085654 ENSMUST00000129102 Gm12536 lincRNA Interval_79998 chr18 36552106 36552900 + 0 NA intron (ENSMUSG00000024485.16, intron 20 of 20) protein_coding-intron (ENSMUSG00000024485.16, intron 19 of 19) 24352 ENSMUSG00000024485.16 ENSMUSG00000024485 ENSMUST00000235382 Slc4a9 protein_coding Interval_49923 chr13 118339307 118339494 + 0 NA Intergenic Intergenic -47230 ENSMUSG00000097411.2 ENSMUSG00000097411 ENSMUST00000181168 B430218F22Rik antisense Interval_56551 chr14 120303020 120303751 + 0 NA intron (ENSMUSG00000022139.17, intron 1 of 7) protein_coding-intron (ENSMUSG00000022139.17, intron 1 of 8) -75856 ENSMUSG00000022139.17 ENSMUSG00000022139 ENSMUST00000227153 Mbnl2 protein_coding Interval_109014 chr3 135055861 135056460 + 0 NA Intergenic Intergenic -65701 ENSMUSG00000105538.1 ENSMUSG00000105538 ENSMUST00000197899 Gm2142 processed_pseudogene Interval_9200 chr1 155030739 155031270 + 0 NA promoter-TSS (ENSMUSG00000101433.1) processed_pseudogene-promoter-TSS (ENSMUSG00000101433.1) -735 ENSMUSG00000101433.1 ENSMUSG00000101433 ENSMUST00000191584 Gm29441 processed_pseudogene Interval_104731 chr3 69880339 69880963 + 0 NA Intergenic Intergenic -20729 ENSMUSG00000043461.13 ENSMUSG00000043461 ENSMUST00000171529 Sptssb protein_coding Interval_15562 chr10 51523049 51523215 + 0 NA promoter-TSS (ENSMUSG00000112766.1) antisense-promoter-TSS (ENSMUSG00000112766.1) -685 ENSMUSG00000112766.1 ENSMUSG00000112766 ENSMUST00000218413 Gm40645 antisense Interval_46794 chr13 70607076 70607431 + 0 NA intron (ENSMUSG00000034525.7, intron 12 of 18) protein_coding-intron (ENSMUSG00000034525.7, intron 12 of 18) -11000 ENSMUSG00000034525.7 ENSMUSG00000034525 ENSMUST00000222568 Ice1 protein_coding Interval_9120 chr1 153749150 153749901 + 0 NA promoter-TSS (ENSMUSG00000066800.11) protein_coding-promoter-TSS (ENSMUSG00000066800.11) -201 ENSMUSG00000099568.1 ENSMUSG00000099568 ENSMUST00000191474 Gm28513 antisense Interval_84693 chr19 15362483 15362755 + 0 NA Intergenic Intergenic -317385 ENSMUSG00000094850.1 ENSMUSG00000094850 ENSMUST00000083389 Gm24319 snRNA Interval_170472 chr9 108200771 108201588 + 0 NA Intergenic Intergenic -9831 ENSMUSG00000102538.1 ENSMUSG00000102538 ENSMUST00000194491 Gm37230 TEC Interval_136949 chr6 65034305 65035147 + 0 NA Intergenic Intergenic -7941 ENSMUSG00000029920.9 ENSMUSG00000029920 ENSMUST00000203104 Smarcad1 protein_coding Interval_88591 chr2 6422398 6422982 + 0 NA intron (ENSMUSG00000039046.15, intron 1 of 2) protein_coding-intron (ENSMUSG00000039046.15, intron 7 of 13) 1768 ENSMUSG00000039046.15 ENSMUSG00000039046 ENSMUST00000150515 Usp6nl protein_coding Interval_113002 chr4 46728190 46728565 + 0 NA intron (ENSMUSG00000039809.10, intron 11 of 18) protein_coding-intron (ENSMUSG00000039809.10, intron 11 of 18) -78168 ENSMUSG00000039813.14 ENSMUSG00000039813 ENSMUST00000107750 Tbc1d2 protein_coding Interval_142224 chr6 139248836 139249396 + 0 NA Intergenic Intergenic -52885 ENSMUSG00000088903.1 ENSMUSG00000088903 ENSMUST00000158278 Gm25434 scaRNA Interval_116689 chr4 116660374 116661250 + 0 NA Intergenic Intergenic -11338 ENSMUSG00000028692.14 ENSMUSG00000028692 ENSMUST00000128059 Akr1a1 protein_coding Interval_162805 chr9 9268030 9270388 + 0 NA Intergenic Intergenic -30309 ENSMUSG00000050730.17 ENSMUSG00000050730 ENSMUST00000183182 Arhgap42 protein_coding Interval_4392 chr1 73740417 73740650 + 0 NA intron (ENSMUSG00000100301.6, intron 6 of 8) lincRNA-intron (ENSMUSG00000100301.6, intron 6 of 8) 3414 ENSMUSG00000100301.6 ENSMUSG00000100301 ENSMUST00000189514 6030407O03Rik lincRNA Interval_60480 chr15 74186765 74187983 + 0 NA Intergenic Intergenic -93041 ENSMUSG00000082585.3 ENSMUSG00000082585 ENSMUST00000120421 Gm15387 processed_pseudogene Interval_33371 chr11 116167704 116168597 + 0 NA promoter-TSS (ENSMUSG00000020776.18) protein_coding-promoter-TSS (ENSMUSG00000020776.18) -4114 ENSMUSG00000105120.1 ENSMUSG00000105120 ENSMUST00000198972 Gm26413 scaRNA Interval_153257 chr7 142967258 142969635 + 0 NA exon (ENSMUSG00000009248.6, exon 2 of 3) protein_coding-exon (ENSMUSG00000009248.6, exon 2 of 3) 271 ENSMUSG00000009248.6 ENSMUSG00000009248 ENSMUST00000121862 Ascl2 protein_coding Interval_107831 chr3 115992829 115993799 + 0 NA promoter-TSS (ENSMUSG00000054414.4) protein_coding-promoter-TSS (ENSMUSG00000054414.4) 13412 ENSMUSG00000089261.1 ENSMUSG00000089261 ENSMUST00000158636 Mir669n miRNA Interval_88333 chr2 3890433 3891158 + 0 NA Intergenic Intergenic 35765 ENSMUSG00000085656.1 ENSMUSG00000085656 ENSMUST00000141222 Gm13180 lincRNA Interval_42819 chr13 20016416 20017101 + 0 NA Intergenic Intergenic -20954 ENSMUSG00000050243.6 ENSMUSG00000050243 ENSMUST00000091762 Gm5446 processed_pseudogene Interval_23874 chr11 27388895 27389672 + 0 NA Intergenic Intergenic 29103 ENSMUSG00000080735.1 ENSMUSG00000080735 ENSMUST00000117426 Gm12075 processed_pseudogene Interval_39527 chr12 89312560 89312803 + 0 NA intron (ENSMUSG00000066392.12, intron 5 of 18) protein_coding-intron (ENSMUSG00000066392.12, intron 6 of 19) -14098 ENSMUSG00000098757.1 ENSMUSG00000098757 ENSMUST00000183500 Gm27313 miRNA Interval_159344 chr8 93941525 93941939 + 0 NA intron (ENSMUSG00000031748.16, intron 3 of 7) protein_coding-intron (ENSMUSG00000031748.16, intron 3 of 8) -7796 ENSMUSG00000093005.1 ENSMUSG00000093005 ENSMUST00000175264 Gm24159 miRNA Interval_8048 chr1 135421671 135422148 + 0 NA intron (ENSMUSG00000041879.13, intron 1 of 24) protein_coding-intron (ENSMUSG00000041879.13, intron 1 of 23) -7723 ENSMUSG00000100620.1 ENSMUSG00000100620 ENSMUST00000187450 Gm28277 sense_intronic Interval_94173 chr2 84851134 84851649 + 0 NA intron (ENSMUSG00000027075.16, intron 5 of 12) protein_coding-intron (ENSMUSG00000027075.16, intron 5 of 14) 11996 ENSMUSG00000027075.16 ENSMUSG00000027075 ENSMUST00000111625 Slc43a1 protein_coding Interval_152084 chr7 128980116 128980303 + 0 NA Intergenic Intergenic 17812 ENSMUSG00000108540.1 ENSMUSG00000108540 ENSMUST00000206199 Gm4768 processed_pseudogene Interval_66729 chr16 36707301 36708725 + 0 NA intron (ENSMUSG00000022900.14, intron 1 of 4) protein_coding-intron (ENSMUSG00000022900.14, intron 1 of 7) 13980 ENSMUSG00000022900.14 ENSMUSG00000022900 ENSMUST00000128084 Ildr1 protein_coding Interval_136853 chr6 61382694 61382907 + 0 NA intron (ENSMUSG00000039578.17, intron 2 of 3) protein_coding-intron (ENSMUSG00000039578.17, intron 3 of 9) -17807 ENSMUSG00000107757.1 ENSMUSG00000107757 ENSMUST00000204456 Gm43898 processed_pseudogene Interval_172619 chrX 38461683 38462231 + 0 NA Intergenic Intergenic -5543 ENSMUSG00000016534.15 ENSMUSG00000016534 ENSMUST00000144663 Lamp2 protein_coding Interval_18429 chr10 85891461 85892015 + 0 NA TTS (ENSMUSG00000035529.10) protein_coding-TTS (ENSMUSG00000035529.10) 19854 ENSMUSG00000001785.13 ENSMUSG00000001785 ENSMUST00000219626 Pwp1 protein_coding Interval_145310 chr7 31890618 31890912 + 0 NA Intergenic Intergenic -5740 ENSMUSG00000101765.1 ENSMUSG00000101765 ENSMUST00000186640 Gm21673 processed_pseudogene Interval_39856 chr12 99128585 99129367 + 0 NA Intergenic Intergenic 33832 ENSMUSG00000113210.1 ENSMUSG00000113210 ENSMUST00000223511 4930474N09Rik lincRNA Interval_135509 chr6 39770867 39771353 + 0 NA Intergenic Intergenic 34932 ENSMUSG00000029918.9 ENSMUSG00000029918 ENSMUST00000139992 Mrps33 protein_coding Interval_88733 chr2 10074311 10074705 + 0 NA intron (ENSMUSG00000025781.14, intron 1 of 9) protein_coding-intron (ENSMUSG00000025781.14, intron 1 of 8) 1272 ENSMUSG00000077733.1 ENSMUSG00000077733 ENSMUST00000104545 Gm23608 snoRNA Interval_77843 chr18 4411749 4412221 + 0 NA Intergenic Intergenic 12657 ENSMUSG00000117579.1 ENSMUSG00000117579 ENSMUST00000234374 Gm50023 lincRNA Interval_32050 chr11 104743011 104743527 + 0 NA intron (ENSMUSG00000040838.10, intron 20 of 187) protein_coding-intron (ENSMUSG00000040838.10, intron 17 of 20) 57562 ENSMUSG00000040838.10 ENSMUSG00000040838 ENSMUST00000175713 Gm11639 protein_coding Interval_172282 chrX 12307797 12308073 + 0 NA Intergenic Intergenic 47061 ENSMUSG00000087591.7 ENSMUSG00000087591 ENSMUST00000137281 Gm14635 lincRNA Interval_25263 chr11 45960013 45960284 + 0 NA Intergenic Intergenic -4991 ENSMUSG00000011254.16 ENSMUSG00000011254 ENSMUST00000131182 Thg1l protein_coding Interval_55012 chr14 76882938 76883332 + 0 NA Intergenic Intergenic 21564 ENSMUSG00000115596.1 ENSMUSG00000115596 ENSMUST00000227341 Gm48969 lincRNA Interval_33008 chr11 113648072 113650276 + 0 NA promoter-TSS (ENSMUSG00000018661.17) protein_coding-promoter-TSS (ENSMUSG00000018661.17) -9404 ENSMUSG00000018661.17 ENSMUSG00000018661 ENSMUST00000137878 Cog1 protein_coding Interval_85763 chr19 30552185 30552648 + 0 NA Intergenic Intergenic -2751 ENSMUSG00000024868.8 ENSMUSG00000024868 ENSMUST00000025803 Dkk1 protein_coding Interval_109248 chr3 138277122 138277561 + 0 NA promoter-TSS (ENSMUSG00000074207.10) protein_coding-promoter-TSS (ENSMUSG00000074207.10) 16350 ENSMUSG00000074207.10 ENSMUSG00000074207 ENSMUST00000159159 Adh1 protein_coding Interval_51131 chr14 23960648 23961044 + 0 NA intron (ENSMUSG00000063142.15, intron 1 of 16) protein_coding-intron (ENSMUSG00000063142.15, intron 1 of 29) -44145 ENSMUSG00000114953.1 ENSMUSG00000114953 ENSMUST00000223837 4930519K11Rik bidirectional_promoter_lncRNA Interval_70048 chr17 4984591 4986084 + 0 NA Intergenic Intergenic -9602 ENSMUSG00000069729.14 ENSMUSG00000069729 ENSMUST00000146703 Arid1b protein_coding Interval_58856 chr15 39227965 39228212 + 0 NA intron (ENSMUSG00000037386.16, intron 1 of 25) protein_coding-intron (ENSMUSG00000037386.16, intron 1 of 26) 47577 ENSMUSG00000098021.2 ENSMUSG00000098021 ENSMUST00000182394 Gm9522 processed_pseudogene Interval_102463 chr3 26970542 26971016 + 0 NA intron (ENSMUSG00000039335.11, intron 10 of 10) protein_coding-intron (ENSMUSG00000039335.11, intron 10 of 10) -41985 ENSMUSG00000103712.1 ENSMUSG00000103712 ENSMUST00000194574 Gm37659 processed_pseudogene Interval_96163 chr2 120173556 120174329 + 0 NA intron (ENSMUSG00000050211.14, intron 11 of 16) protein_coding-intron (ENSMUSG00000050211.14, intron 14 of 19) -36382 ENSMUSG00000027293.13 ENSMUSG00000027293 ENSMUST00000148073 Ehd4 protein_coding Interval_45533 chr13 55692496 55693688 + 0 NA promoter-TSS (ENSMUSG00000045767.9) protein_coding-promoter-TSS (ENSMUSG00000045767.9) -32 ENSMUSG00000045767.9 ENSMUSG00000045767 ENSMUST00000057844 B230219D22Rik protein_coding Interval_84795 chr19 16794435 16795121 + 0 NA Intergenic Intergenic 14231 ENSMUSG00000046388.4 ENSMUSG00000046388 ENSMUST00000051080 Gm9806 pseudogene Interval_5448 chr1 88865424 88865763 + 0 NA Intergenic Intergenic 9817 ENSMUSG00000099848.1 ENSMUSG00000099848 ENSMUST00000185425 Gm29337 lincRNA Interval_136789 chr6 60321415 60322314 + 0 NA intron (ENSMUSG00000046764.8, intron 1 of 1) processed_transcript-intron (ENSMUSG00000046764.8, intron 1 of 1) 71072 ENSMUSG00000064515.1 ENSMUSG00000064515 ENSMUST00000082581 n-R5s162 rRNA Interval_66820 chr16 37888981 37889185 + 0 NA TTS (ENSMUSG00000034158.9) protein_coding-TTS (ENSMUSG00000034158.9) 6541 ENSMUSG00000083405.1 ENSMUSG00000083405 ENSMUST00000119947 Gm15725 transcribed_processed_pseudogene Interval_117415 chr4 123584201 123584826 + 0 NA intron (ENSMUSG00000028649.21, intron 1 of 97) protein_coding-intron (ENSMUSG00000028649.21, intron 1 of 92) 29230 ENSMUSG00000028649.21 ENSMUSG00000028649 ENSMUST00000146000 Macf1 protein_coding Interval_14171 chr10 28276340 28276693 + 0 NA intron (ENSMUSG00000019889.10, intron 3 of 14) protein_coding-intron (ENSMUSG00000019889.10, intron 3 of 31) -62395 ENSMUSG00000076377.1 ENSMUSG00000076377 ENSMUST00000102422 Gm22370 miRNA Interval_147194 chr7 64322451 64323015 + 0 NA intron (ENSMUSG00000030522.14, intron 13 of 16) protein_coding-intron (ENSMUSG00000030522.14, intron 12 of 15) 23231 ENSMUSG00000092187.1 ENSMUSG00000092187 ENSMUST00000173374 Gm20457 antisense Interval_140056 chr6 113686423 113687315 + 0 NA exon (ENSMUSG00000060477.14, exon 11 of 13) protein_coding-exon (ENSMUSG00000060477.14, exon 11 of 13) -2986 ENSMUSG00000108024.1 ENSMUSG00000108024 ENSMUST00000204352 Gm43912 TEC Interval_97840 chr2 144379640 144380149 + 0 NA intron (ENSMUSG00000027425.18, intron 2 of 3) protein_coding-intron (ENSMUSG00000027425.18, intron 3 of 10) 10898 ENSMUSG00000098387.2 ENSMUSG00000098387 ENSMUST00000183618 Pet117 protein_coding Interval_3387 chr1 57825669 57826422 + 0 NA intron (ENSMUSG00000038305.15, intron 2 of 11) protein_coding-intron (ENSMUSG00000038305.15, intron 2 of 11) 51883 ENSMUSG00000038305.15 ENSMUSG00000038305 ENSMUST00000164353 Spats2l protein_coding Interval_19681 chr10 107870107 107870456 + 0 NA intron (ENSMUSG00000091455.4, intron 17 of 57) protein_coding-intron (ENSMUSG00000091455.4, intron 17 of 57) 41853 ENSMUSG00000091455.4 ENSMUSG00000091455 ENSMUST00000165341 Otogl protein_coding Interval_166155 chr9 57138999 57140216 + 0 NA promoter-TSS (ENSMUSG00000032295.15) protein_coding-promoter-TSS (ENSMUSG00000032295.15) 8520 ENSMUSG00000032298.13 ENSMUSG00000032298 ENSMUST00000034842 Neil1 protein_coding Interval_96028 chr2 119276623 119278397 + 0 NA Intergenic Intergenic -6238 ENSMUSG00000034226.7 ENSMUSG00000034226 ENSMUST00000037360 Rhov protein_coding Interval_44897 chr13 49459558 49459907 + 0 NA intron (ENSMUSG00000021385.10, intron 13 of 13) protein_coding-intron (ENSMUSG00000021385.10, intron 12 of 12) -33586 ENSMUSG00000113255.1 ENSMUSG00000113255 ENSMUST00000222404 Tes3-ps protein_coding Interval_64632 chr16 13766354 13767117 + 0 NA Intergenic Intergenic 12169 ENSMUSG00000118559.2 ENSMUSG00000118559 ENSMUST00000239037 A930007A09Rik protein_coding Interval_63516 chr15 101646869 101647267 + 0 NA exon (ENSMUSG00000095241.2, exon 1 of 8) protein_coding-exon (ENSMUSG00000095241.2, exon 1 of 8) 312 ENSMUSG00000095241.2 ENSMUSG00000095241 ENSMUST00000100184 Gm5478 protein_coding Interval_105608 chr3 88081442 88082824 + 0 NA intron (ENSMUSG00000028068.14, intron 1 of 22) protein_coding-intron (ENSMUSG00000028068.14, intron 1 of 37) 105 ENSMUSG00000028068.14 ENSMUSG00000028068 ENSMUST00000194772 Iqgap3 protein_coding Interval_22247 chr11 8051573 8052056 + 0 NA Intergenic Intergenic -46798 ENSMUSG00000089247.1 ENSMUSG00000089247 ENSMUST00000158622 Gm24051 snoRNA Interval_161317 chr8 119698775 119700210 + 0 NA promoter-TSS (ENSMUSG00000034112.9) protein_coding-promoter-TSS (ENSMUSG00000034112.9) -578 ENSMUSG00000034112.9 ENSMUSG00000034112 ENSMUST00000212454 Atp2c2 protein_coding Interval_135511 chr6 39782474 39782700 + 0 NA Intergenic Intergenic 23455 ENSMUSG00000029918.9 ENSMUSG00000029918 ENSMUST00000139992 Mrps33 protein_coding Interval_65043 chr16 18668568 18668754 + 0 NA Intergenic Intergenic 13555 ENSMUSG00000116825.1 ENSMUSG00000116825 ENSMUST00000231787 Rps2-ps7 processed_pseudogene Interval_152645 chr7 135669011 135669890 + 0 NA intron (ENSMUSG00000041836.10, intron 12 of 20) protein_coding-intron (ENSMUSG00000041836.10, intron 12 of 20) -17167 ENSMUSG00000097471.8 ENSMUSG00000097471 ENSMUST00000210953 5830432E09Rik antisense Interval_118150 chr4 129242024 129243024 + 0 NA intron (ENSMUSG00000050390.12, intron 1 of 3) protein_coding-intron (ENSMUSG00000050390.12, intron 1 of 6) -15044 ENSMUSG00000050390.12 ENSMUSG00000050390 ENSMUST00000146376 C77080 protein_coding Interval_173166 chrX 73737130 73740129 + 0 NA TTS (ENSMUSG00000031378.14) protein_coding-TTS (ENSMUSG00000031378.14) -14045 ENSMUSG00000088823.1 ENSMUSG00000088823 ENSMUST00000158198 Gm25226 snoRNA Interval_64648 chr16 13873173 13873604 + 0 NA intron (ENSMUSG00000022680.14, intron 6 of 22) protein_coding-intron (ENSMUSG00000022680.14, intron 6 of 23) 29594 ENSMUSG00000022680.14 ENSMUSG00000022680 ENSMUST00000137715 Pdxdc1 protein_coding Interval_172364 chrX 13842569 13843162 + 0 NA intron (ENSMUSG00000031012.17, intron 1 of 2) protein_coding-intron (ENSMUSG00000031012.17, intron 1 of 24) -56835 ENSMUSG00000031012.17 ENSMUSG00000031012 ENSMUST00000155989 Cask protein_coding Interval_10892 chr1 176688342 176689599 + 0 NA Intergenic Intergenic -11647 ENSMUSG00000087875.1 ENSMUSG00000087875 ENSMUST00000157250 Gm26104 snRNA Interval_64012 chr16 5254172 5256539 + 0 NA exon (ENSMUSG00000087168.1, exon 1 of 2) antisense-exon (ENSMUSG00000087168.1, exon 1 of 2) 569 ENSMUSG00000087168.1 ENSMUSG00000087168 ENSMUST00000140000 Gm15983 antisense Interval_54969 chr14 76567378 76567639 + 0 NA Intergenic Intergenic -10619 ENSMUSG00000052584.10 ENSMUSG00000052584 ENSMUST00000228524 Serp2 protein_coding Interval_151734 chr7 126323892 126326455 + 0 NA Intergenic Intergenic -25257 ENSMUSG00000066180.5 ENSMUSG00000066180 ENSMUST00000084598 Gm10155 processed_pseudogene Interval_86496 chr19 41103567 41104376 + 0 NA intron (ENSMUSG00000025013.15, intron 12 of 20) protein_coding-intron (ENSMUSG00000025013.15, intron 12 of 20) -35848 ENSMUSG00000050121.9 ENSMUSG00000050121 ENSMUST00000087176 Opalin protein_coding Interval_145518 chr7 35333270 35335411 + 0 NA promoter-TSS (ENSMUSG00000030494.13) protein_coding-promoter-TSS (ENSMUSG00000030494.13) -48225 ENSMUSG00000030494.13 ENSMUSG00000030494 ENSMUST00000187997 Rhpn2 protein_coding Interval_55675 chr14 98874805 98875725 + 0 NA Intergenic Intergenic 45680 ENSMUSG00000115242.1 ENSMUSG00000115242 ENSMUST00000226462 Gm49018 lincRNA Interval_137062 chr6 67072790 67073233 + 0 NA intron (ENSMUSG00000087231.7, intron 4 of 6) processed_transcript-intron (ENSMUSG00000087231.7, intron 4 of 6) -3749 ENSMUSG00000087231.7 ENSMUSG00000087231 ENSMUST00000204847 E230016M11Rik processed_transcript Interval_68646 chr16 83132076 83132293 + 0 NA Intergenic Intergenic 239549 ENSMUSG00000071475.3 ENSMUSG00000071475 ENSMUST00000095940 Rpl21-ps5 processed_pseudogene Interval_107978 chr3 118500234 118500436 + 0 NA intron (ENSMUSG00000097311.7, intron 2 of 4) processed_transcript-intron (ENSMUSG00000097311.7, intron 1 of 1) -25816 ENSMUSG00000104033.1 ENSMUSG00000104033 ENSMUST00000194141 Gm37773 TEC Interval_170090 chr9 104360919 104362433 + 0 NA promoter-TSS (ENSMUSG00000099599.1) lincRNA-promoter-TSS (ENSMUSG00000099599.1) -156 ENSMUSG00000099599.1 ENSMUSG00000099599 ENSMUST00000191599 Gm28548 lincRNA Interval_153052 chr7 141069784 141072433 + 0 NA TTS (ENSMUSG00000055629.5) protein_coding-TTS (ENSMUSG00000055629.5) 833 ENSMUSG00000055629.5 ENSMUSG00000055629 ENSMUST00000210517 B4galnt4 protein_coding Interval_174522 chrX 155687646 155688240 + 0 NA intron (ENSMUSG00000055109.5, intron 1 of 6) protein_coding-intron (ENSMUSG00000055109.5, intron 1 of 6) 63202 ENSMUSG00000055109.5 ENSMUSG00000055109 ENSMUST00000112542 Gm15155 protein_coding Interval_60187 chr15 67101090 67101869 + 0 NA Intergenic Intergenic 27544 ENSMUSG00000013846.10 ENSMUSG00000013846 ENSMUST00000230150 St3gal1 protein_coding Interval_172328 chrX 13046959 13048677 + 0 NA Intergenic Intergenic 5767 ENSMUSG00000087424.1 ENSMUSG00000087424 ENSMUST00000130099 5730405O15Rik processed_transcript Interval_42951 chr13 21865160 21866540 + 0 NA Intergenic Intergenic 10379 ENSMUSG00000080770.1 ENSMUSG00000080770 ENSMUST00000121002 Gm11278 processed_pseudogene Interval_100249 chr2 167951204 167951727 + 0 NA intron (ENSMUSG00000027540.13, intron 1 of 3) protein_coding-intron (ENSMUSG00000027540.13, intron 1 of 8) 19093 ENSMUSG00000027540.13 ENSMUSG00000027540 ENSMUST00000142717 Ptpn1 protein_coding Interval_169993 chr9 103474213 103474652 + 0 NA intron (ENSMUSG00000085168.2, intron 2 of 3) protein_coding-intron (ENSMUSG00000032556.11, intron 1 of 6) -14894 ENSMUSG00000085168.2 ENSMUSG00000085168 ENSMUST00000215604 Gm16252 antisense Interval_99073 chr2 157016064 157017270 + 0 NA exon (ENSMUSG00000055485.6, exon 15 of 15) protein_coding-exon (ENSMUSG00000055485.6, exon 15 of 15) -10093 ENSMUSG00000027635.15 ENSMUSG00000027635 ENSMUST00000154213 Dsn1 protein_coding Interval_34570 chr12 5226849 5227450 + 0 NA intron (ENSMUSG00000020627.10, intron 1 of 11) protein_coding-intron (ENSMUSG00000020627.10, intron 2 of 13) 8815 ENSMUSG00000112020.1 ENSMUSG00000112020 ENSMUST00000219031 Gm48532 TEC Interval_80122 chr18 37741947 37742533 + 0 NA exon (ENSMUSG00000103088.1, exon 1 of 4) protein_coding-exon (ENSMUSG00000103088.1, exon 1 of 4) 146 ENSMUSG00000103088.1 ENSMUSG00000103088 ENSMUST00000003599 Pcdhgb6 protein_coding Interval_33911 chr11 119371270 119371775 + 0 NA TTS (ENSMUSG00000039908.14) protein_coding-TTS (ENSMUSG00000039908.14) 8873 ENSMUSG00000039908.14 ENSMUSG00000039908 ENSMUST00000151612 Slc26a11 protein_coding Interval_58180 chr15 30398114 30398374 + 0 NA intron (ENSMUSG00000022240.10, intron 2 of 2) protein_coding-intron (ENSMUSG00000022240.10, intron 2 of 22) -30600 ENSMUSG00000115073.1 ENSMUSG00000115073 ENSMUST00000226263 Gm49283 TEC Interval_131984 chr5 141839051 141839787 + 0 NA intron (ENSMUSG00000039683.16, intron 5 of 9) protein_coding-intron (ENSMUSG00000039683.16, intron 5 of 44) -223417 ENSMUSG00000085540.1 ENSMUSG00000085540 ENSMUST00000150385 Gm16036 antisense Interval_129245 chr5 118413421 118414086 + 0 NA Intergenic Intergenic 5065 ENSMUSG00000093041.1 ENSMUSG00000093041 ENSMUST00000175300 Gm26455 miRNA Interval_10412 chr1 170561942 170563225 + 0 NA intron (ENSMUSG00000038473.14, intron 1 of 7) protein_coding-intron (ENSMUSG00000038473.14, intron 1 of 3) -68338 ENSMUSG00000102193.1 ENSMUSG00000102193 ENSMUST00000194441 Gm7299 processed_pseudogene Interval_132556 chr5 146303249 146303901 + 0 NA TTS (ENSMUSG00000029635.15) protein_coding-TTS (ENSMUSG00000029635.15) 17399 ENSMUSG00000029635.15 ENSMUSG00000029635 ENSMUST00000160924 Cdk8 protein_coding Interval_115680 chr4 101997319 101998818 + 0 NA Intergenic Intergenic 11208 ENSMUSG00000078625.10 ENSMUSG00000078625 ENSMUST00000106915 Gm12789 protein_coding Interval_104352 chr3 63928788 63929747 + 0 NA exon (ENSMUSG00000048581.12, exon 1 of 5) protein_coding-exon (ENSMUSG00000048581.12, exon 1 of 5) 124 ENSMUSG00000048581.12 ENSMUSG00000048581 ENSMUST00000160983 E130311K13Rik protein_coding Interval_48905 chr13 104610406 104611162 + 0 NA Intergenic Intergenic -74147 ENSMUSG00000084860.1 ENSMUSG00000084860 ENSMUST00000131215 2610204G07Rik antisense Interval_145137 chr7 30231316 30233524 + 0 NA promoter-TSS (ENSMUSG00000006095.12) protein_coding-promoter-TSS (ENSMUSG00000006095.12) -183 ENSMUSG00000019738.15 ENSMUSG00000019738 ENSMUST00000138886 Polr2i protein_coding Interval_9671 chr1 160921285 160922995 + 0 NA intron (ENSMUSG00000040423.11, intron 1 of 20) protein_coding-intron (ENSMUSG00000040423.11, intron 1 of 19) 6816 ENSMUSG00000103739.1 ENSMUSG00000103739 ENSMUST00000195401 Gm37653 TEC Interval_76239 chr17 78362206 78362580 + 0 NA intron (ENSMUSG00000024074.8, intron 2 of 3) protein_coding-intron (ENSMUSG00000024074.8, intron 13 of 16) 40142 ENSMUSG00000056121.16 ENSMUSG00000056121 ENSMUST00000234900 Fez2 protein_coding Interval_134009 chr6 17693679 17694940 + 0 NA promoter-TSS (ENSMUSG00000098874.1) misc_RNA-promoter-TSS (ENSMUSG00000098874.1) 372 ENSMUSG00000098567.1 ENSMUSG00000098567 ENSMUST00000183417 Gm27762 misc_RNA Interval_38988 chr12 84310623 84312074 + 0 NA intron (ENSMUSG00000072946.12, intron 9 of 9) protein_coding-intron (ENSMUSG00000072946.12, intron 9 of 9) 5728 ENSMUSG00000113529.1 ENSMUSG00000113529 ENSMUST00000222984 Gm47484 bidirectional_promoter_lncRNA Interval_95296 chr2 105903868 105905212 + 0 NA promoter-TSS (ENSMUSG00000042670.5) protein_coding-promoter-TSS (ENSMUSG00000042670.5) -98 ENSMUSG00000042670.5 ENSMUSG00000042670 ENSMUST00000037499 Immp1l protein_coding Interval_50721 chr14 18546398 18547085 + 0 NA Intergenic Intergenic -1609 ENSMUSG00000114529.1 ENSMUSG00000114529 ENSMUST00000224515 Gm4939 processed_pseudogene Interval_77114 chr17 86669624 86671430 + 0 NA Intergenic Intergenic 14969 ENSMUSG00000117568.1 ENSMUSG00000117568 ENSMUST00000234033 Gm18832 processed_pseudogene Interval_102469 chr3 27070418 27071331 + 0 NA Intergenic Intergenic -22921 ENSMUSG00000102908.1 ENSMUSG00000102908 ENSMUST00000193221 Gm7558 processed_pseudogene Interval_13746 chr10 21776323 21777312 + 0 NA Intergenic Intergenic 32950 ENSMUSG00000099749.1 ENSMUSG00000099749 ENSMUST00000189792 Gm29323 lincRNA Interval_23257 chr11 20948096 20948369 + 0 NA Intergenic Intergenic -10531 ENSMUSG00000096061.1 ENSMUSG00000096061 ENSMUST00000178821 Gm23681 miRNA Interval_93427 chr2 72992375 72992667 + 0 NA Intergenic Intergenic -5805 ENSMUSG00000079286.1 ENSMUSG00000079286 ENSMUST00000112062 Gm11084 protein_coding Interval_35501 chr12 23239979 23240265 + 0 NA intron (ENSMUSG00000092465.2, intron 3 of 5) unprocessed_pseudogene-intron (ENSMUSG00000092465.2, intron 3 of 5) 40342 ENSMUSG00000096441.1 ENSMUSG00000096441 ENSMUST00000103807 Gm26140 miRNA Interval_110587 chr4 4249598 4250354 + 0 NA Intergenic Intergenic -111157 ENSMUSG00000045573.9 ENSMUSG00000045573 ENSMUST00000133567 Penk protein_coding Interval_160274 chr8 107610205 107612063 + 0 NA Intergenic Intergenic -22676 ENSMUSG00000039067.5 ENSMUSG00000039067 ENSMUST00000213080 Psmd7 protein_coding Interval_53065 chr14 54150389 54150881 + 0 NA Intergenic Intergenic -1341 ENSMUSG00000076873.2 ENSMUSG00000076873 ENSMUST00000103685 Trdv5 TR_V_gene Interval_42744 chr13 18855706 18857802 + 0 NA intron (ENSMUSG00000041236.8, intron 25 of 28) protein_coding-intron (ENSMUSG00000041236.8, intron 25 of 28) -65823 ENSMUSG00000089046.1 ENSMUSG00000089046 ENSMUST00000158421 Gm26172 snoRNA Interval_7680 chr1 133012297 133013570 + 0 NA intron (ENSMUSG00000054387.13, intron 2 of 9) protein_coding-intron (ENSMUSG00000054387.13, intron 2 of 10) 12424 ENSMUSG00000054387.13 ENSMUSG00000054387 ENSMUST00000186645 Mdm4 protein_coding Interval_128225 chr5 111862267 111862794 + 0 NA Intergenic Intergenic 69143 ENSMUSG00000105376.4 ENSMUSG00000105376 ENSMUST00000200641 Gm36535 lincRNA Interval_73243 chr17 35737648 35738328 + 0 NA exon (ENSMUSG00000092219.1, exon 4 of 4) lincRNA-exon (ENSMUSG00000092219.1, exon 4 of 4) 1818 ENSMUSG00000092219.1 ENSMUSG00000092219 ENSMUST00000173840 Gm20443 lincRNA Interval_117471 chr4 123965441 123966170 + 0 NA Intergenic Intergenic 39571 ENSMUSG00000082515.1 ENSMUSG00000082515 ENSMUST00000118389 Gm12902 processed_pseudogene Interval_163777 chr9 25578371 25578625 + 0 NA intron (ENSMUSG00000036611.5, intron 3 of 7) protein_coding-intron (ENSMUSG00000036611.5, intron 3 of 7) -8693 ENSMUSG00000077697.1 ENSMUSG00000077697 ENSMUST00000104509 Gm25346 snoRNA Interval_118554 chr4 132469822 132470192 + 0 NA Intergenic Intergenic -6676 ENSMUSG00000066042.4 ENSMUSG00000066042 ENSMUST00000123604 Med18 protein_coding Interval_59153 chr15 44990171 44990868 + 0 NA Intergenic Intergenic -18386 ENSMUSG00000058463.3 ENSMUSG00000058463 ENSMUST00000072732 Gm5471 processed_pseudogene Interval_61656 chr15 83235410 83238081 + 0 NA intron (ENSMUSG00000047878.13, intron 1 of 2) protein_coding-intron (ENSMUSG00000047878.13, intron 1 of 2) 14984 ENSMUSG00000047878.13 ENSMUSG00000047878 ENSMUST00000229454 A4galt protein_coding Interval_133126 chr5 150030900 150032247 + 0 NA intron (ENSMUSG00000053368.13, intron 1 of 16) protein_coding-intron (ENSMUSG00000053368.13, intron 1 of 17) 9094 ENSMUSG00000107360.1 ENSMUSG00000107360 ENSMUST00000200982 Gm42558 sense_intronic Interval_18288 chr10 84598152 84598793 + 0 NA intron (ENSMUSG00000020034.7, intron 1 of 1) protein_coding-intron (ENSMUSG00000020034.7, intron 6 of 9) -16247 ENSMUSG00000089096.1 ENSMUSG00000089096 ENSMUST00000158471 Gm25657 snRNA Interval_172418 chrX 18583768 18584716 + 0 NA Intergenic Intergenic -122845 ENSMUSG00000037358.6 ENSMUSG00000037358 ENSMUST00000044188 Dipk2b protein_coding Interval_143985 chr7 18770148 18770802 + 0 NA Intergenic Intergenic 9617 ENSMUSG00000109234.1 ENSMUSG00000109234 ENSMUST00000208869 Gm44561 unprocessed_pseudogene Interval_34485 chr12 4558673 4559203 + 0 NA intron (ENSMUSG00000112819.1, intron 1 of 3) lincRNA-intron (ENSMUSG00000112819.1, intron 1 of 3) 10600 ENSMUSG00000112819.1 ENSMUSG00000112819 ENSMUST00000220320 Gm46332 lincRNA Interval_111696 chr4 26213441 26213625 + 0 NA Intergenic Intergenic 133358 ENSMUSG00000040520.7 ENSMUSG00000040520 ENSMUST00000153813 Manea protein_coding Interval_162973 chr9 13913646 13914815 + 0 NA Intergenic Intergenic 5889 ENSMUSG00000111100.1 ENSMUSG00000111100 ENSMUST00000214890 Gm47535 lincRNA Interval_109717 chr3 146253106 146254258 + 0 NA intron (ENSMUSG00000036832.5, intron 2 of 2) protein_coding-intron (ENSMUSG00000036832.5, intron 2 of 2) 32719 ENSMUSG00000036832.5 ENSMUSG00000036832 ENSMUST00000039164 Lpar3 protein_coding Interval_139415 chr6 99971393 99971563 + 0 NA intron (ENSMUSG00000108151.1, intron 3 of 3) lincRNA-intron (ENSMUSG00000108151.1, intron 3 of 3) 19737 ENSMUSG00000108151.1 ENSMUSG00000108151 ENSMUST00000204791 Gm33201 lincRNA Interval_67646 chr16 55325261 55325900 + 0 NA Intergenic Intergenic -27594 ENSMUSG00000064310.10 ENSMUSG00000064310 ENSMUST00000143914 Zpld1 protein_coding Interval_136264 chr6 52382000 52382683 + 0 NA Intergenic Intergenic -24517 ENSMUSG00000084282.1 ENSMUSG00000084282 ENSMUST00000117393 Gm15054 processed_pseudogene Interval_139410 chr6 99930337 99930614 + 0 NA intron (ENSMUSG00000107528.1, intron 2 of 2) lincRNA-intron (ENSMUSG00000107528.1, intron 2 of 2) 1074 ENSMUSG00000107528.1 ENSMUSG00000107528 ENSMUST00000204919 Gm44442 lincRNA Interval_42101 chr13 8785192 8785666 + 0 NA Intergenic Intergenic 12973 ENSMUSG00000113391.1 ENSMUSG00000113391 ENSMUST00000221553 Gm48327 TEC Interval_94330 chr2 89134484 89134916 + 0 NA Intergenic Intergenic -1646 ENSMUSG00000075101.4 ENSMUSG00000075101 ENSMUST00000099794 Olfr1222 protein_coding Interval_51569 chr14 30370331 30370976 + 0 NA intron (ENSMUSG00000015968.18, intron 1 of 1) protein_coding-intron (ENSMUSG00000015968.18, intron 1 of 46) 13701 ENSMUSG00000114670.1 ENSMUSG00000114670 ENSMUST00000224661 Gm18072 processed_pseudogene Interval_1155 chr1 16205903 16206254 + 0 NA Intergenic Intergenic 4439 ENSMUSG00000104165.1 ENSMUSG00000104165 ENSMUST00000192560 Gm38249 TEC Interval_173138 chrX 73342252 73343420 + 0 NA intron (ENSMUSG00000031365.13, intron 1 of 4) protein_coding-intron (ENSMUSG00000031365.13, intron 1 of 5) -1632 ENSMUSG00000031365.13 ENSMUSG00000031365 ENSMUST00000139996 Zfp275 protein_coding Interval_102742 chr3 30722066 30722648 + 0 NA Intergenic Intergenic -22589 ENSMUSG00000074653.10 ENSMUSG00000074653 ENSMUST00000130731 Lrrc31 protein_coding Interval_75271 chr17 65597738 65599233 + 0 NA intron (ENSMUSG00000024091.9, intron 1 of 5) protein_coding-intron (ENSMUSG00000024091.9, intron 1 of 5) -3515 ENSMUSG00000024091.9 ENSMUSG00000024091 ENSMUST00000232686 Vapa protein_coding Interval_82435 chr18 73983586 73984496 + 0 NA intron (ENSMUSG00000024558.12, intron 1 of 1) protein_coding-intron (ENSMUSG00000024558.12, intron 1 of 5) -33866 ENSMUSG00000090263.1 ENSMUSG00000090263 ENSMUST00000159260 D730045A05Rik lincRNA Interval_63122 chr15 99211858 99213434 + 0 NA exon (ENSMUSG00000051934.5, exon 13 of 13) protein_coding-exon (ENSMUSG00000051934.5, exon 13 of 13) -25259 ENSMUSG00000037579.7 ENSMUSG00000037579 ENSMUST00000230552 Kcnh3 protein_coding Interval_85897 chr19 32829953 32830851 + 0 NA Intergenic Intergenic 19177 ENSMUSG00000013663.7 ENSMUSG00000013663 ENSMUST00000154806 Pten protein_coding Interval_156036 chr8 43100178 43100452 + 0 NA Intergenic Intergenic 14728 ENSMUSG00000109627.1 ENSMUSG00000109627 ENSMUST00000209715 Gm45590 processed_pseudogene Interval_158528 chr8 84269932 84270951 + 0 NA promoter-TSS (ENSMUSG00000004994.12) protein_coding-promoter-TSS (ENSMUSG00000004994.12) -3603 ENSMUSG00000004994.12 ENSMUSG00000004994 ENSMUST00000166728 Ccdc130 protein_coding Interval_100547 chr2 170060221 170060683 + 0 NA intron (ENSMUSG00000047907.11, intron 1 of 1) protein_coding-intron (ENSMUSG00000047907.11, intron 1 of 1) 87651 ENSMUSG00000052056.14 ENSMUSG00000052056 ENSMUST00000149318 Zfp217 protein_coding Interval_121879 chr5 9087581 9088504 + 0 NA Intergenic Intergenic 53262 ENSMUSG00000114430.1 ENSMUSG00000114430 ENSMUST00000224996 Gm40264 lincRNA Interval_43893 chr13 37892683 37892973 + 0 NA intron (ENSMUSG00000039087.17, intron 3 of 9) protein_coding-intron (ENSMUSG00000039087.17, intron 2 of 11) -54188 ENSMUSG00000039087.17 ENSMUSG00000039087 ENSMUST00000162849 Rreb1 protein_coding Interval_54112 chr14 65389858 65390372 + 0 NA intron (ENSMUSG00000034522.10, intron 4 of 9) protein_coding-intron (ENSMUSG00000034522.10, intron 4 of 9) -30705 ENSMUSG00000114357.1 ENSMUSG00000114357 ENSMUST00000225691 Gm48449 antisense Interval_121382 chr4 155382122 155382507 + 0 NA Intergenic Intergenic 15733 ENSMUSG00000029054.8 ENSMUSG00000029054 ENSMUST00000129892 Gabrd protein_coding Interval_97592 chr2 140203818 140204936 + 0 NA TTS (ENSMUSG00000027384.6) protein_coding-TTS (ENSMUSG00000027384.6) 33347 ENSMUSG00000027384.6 ENSMUSG00000027384 ENSMUST00000125913 Ndufaf5 protein_coding Interval_152386 chr7 132672365 132672760 + 0 NA intron (ENSMUSG00000030946.13, intron 7 of 7) protein_coding-intron (ENSMUSG00000030946.13, intron 6 of 6) -12678 ENSMUSG00000087348.1 ENSMUSG00000087348 ENSMUST00000132849 Gm15582 antisense Interval_155445 chr8 33633845 33634063 + 0 NA intron (ENSMUSG00000052906.7, intron 2 of 4) protein_coding-intron (ENSMUSG00000052906.7, intron 3 of 7) 2300 ENSMUSG00000052906.7 ENSMUSG00000052906 ENSMUST00000210807 Ubxn8 protein_coding Interval_14958 chr10 41464488 41464917 + 0 NA TTS (ENSMUSG00000019826.11) protein_coding-TTS (ENSMUSG00000019826.11) -12377 ENSMUSG00000019823.17 ENSMUSG00000019823 ENSMUST00000138657 Mical1 protein_coding Interval_68527 chr16 78409460 78409670 + 0 NA Intergenic Intergenic 14294 ENSMUSG00000064862.1 ENSMUSG00000064862 ENSMUST00000082928 Gm25038 snoRNA Interval_73795 chr17 43711775 43713212 + 0 NA intron (ENSMUSG00000023963.10, intron 7 of 10) protein_coding-intron (ENSMUSG00000023963.10, intron 7 of 11) 14130 ENSMUSG00000084474.1 ENSMUSG00000084474 ENSMUST00000122525 Gm25783 snRNA Interval_105786 chr3 89332509 89333066 + 0 NA TTS (ENSMUSG00000028040.7) protein_coding-TTS (ENSMUSG00000028040.7) -5063 ENSMUSG00000097004.1 ENSMUSG00000097004 ENSMUST00000180791 4731419I09Rik antisense Interval_138171 chr6 85883808 85884369 + 0 NA Intergenic Intergenic -5238 ENSMUSG00000106784.1 ENSMUSG00000106784 ENSMUST00000200837 Gm43309 processed_pseudogene Interval_57096 chr15 6259689 6260707 + 0 NA Intergenic Intergenic 49715 ENSMUSG00000089771.1 ENSMUSG00000089771 ENSMUST00000161939 Gm16311 antisense Interval_25605 chr11 50184630 50184856 + 0 NA intron (ENSMUSG00000020381.10, intron 3 of 6) protein_coding-intron (ENSMUSG00000020381.10, intron 3 of 6) 10299 ENSMUSG00000020381.10 ENSMUSG00000020381 ENSMUST00000123164 Mrnip protein_coding Interval_93373 chr2 72484657 72485279 + 0 NA promoter-TSS (ENSMUSG00000055612.15) protein_coding-promoter-TSS (ENSMUSG00000055612.15) 8715 ENSMUSG00000055612.15 ENSMUSG00000055612 ENSMUST00000137880 Cdca7 protein_coding Interval_165479 chr9 48586495 48586750 + 0 NA Intergenic Intergenic 10753 ENSMUSG00000032271.13 ENSMUSG00000032271 ENSMUST00000128076 Nnmt protein_coding Interval_110583 chr4 4226088 4226796 + 0 NA Intergenic Intergenic -87623 ENSMUSG00000045573.9 ENSMUSG00000045573 ENSMUST00000133567 Penk protein_coding Interval_125564 chr5 71475115 71475305 + 0 NA intron (ENSMUSG00000049387.10, intron 2 of 2) protein_coding-intron (ENSMUSG00000049387.10, intron 2 of 2) 72995 ENSMUSG00000049387.10 ENSMUSG00000049387 ENSMUST00000050129 Cox7b2 protein_coding Interval_96408 chr2 122264668 122264938 + 0 NA exon (ENSMUSG00000027227.7, exon 9 of 9) protein_coding-exon (ENSMUSG00000027227.7, exon 9 of 9) 30054 ENSMUSG00000027227.7 ENSMUSG00000027227 ENSMUST00000110551 Sord protein_coding Interval_76406 chr17 79981931 79982273 + 0 NA promoter-TSS (ENSMUSG00000117415.1) lincRNA-promoter-TSS (ENSMUSG00000117415.1) -440 ENSMUSG00000117415.1 ENSMUSG00000117415 ENSMUST00000234800 Gm41625 lincRNA Interval_80490 chr18 42685533 42686506 + 0 NA intron (ENSMUSG00000024500.20, intron 7 of 9) protein_coding-intron (ENSMUSG00000024500.20, intron 6 of 8) -63560 ENSMUSG00000117926.1 ENSMUSG00000117926 ENSMUST00000236808 C030004G16Rik lincRNA Interval_29887 chr11 87518985 87520137 + 0 NA intron (ENSMUSG00000010342.16, intron 15 of 30) protein_coding-intron (ENSMUSG00000010342.16, intron 15 of 30) -47092 ENSMUSG00000020486.19 ENSMUSG00000020486 ENSMUST00000143950 Septin4 protein_coding Interval_126631 chr5 91301480 91302229 + 0 NA Intergenic Intergenic -18433 ENSMUSG00000107198.1 ENSMUSG00000107198 ENSMUST00000200707 Gm19619 lincRNA Interval_70838 chr17 15220861 15221041 + 0 NA Intergenic Intergenic 26966 ENSMUSG00000097624.2 ENSMUSG00000097624 ENSMUST00000181658 Gm5091 lincRNA Interval_3781 chr1 63065824 63067283 + 0 NA intron (ENSMUSG00000040865.15, intron 8 of 11) protein_coding-intron (ENSMUSG00000040865.15, intron 7 of 10) -2992 ENSMUSG00000040865.15 ENSMUSG00000040865 ENSMUST00000153992 Ino80d protein_coding Interval_89593 chr2 23098171 23098533 + 0 NA promoter-TSS (ENSMUSG00000026781.17) protein_coding-promoter-TSS (ENSMUSG00000026781.17) 29280 ENSMUSG00000026781.17 ENSMUSG00000026781 ENSMUST00000227612 Acbd5 protein_coding Interval_83094 chr18 81222338 81223321 + 0 NA Intergenic Intergenic 13237 ENSMUSG00000097181.1 ENSMUSG00000097181 ENSMUST00000181204 4930594M17Rik lincRNA Interval_126561 chr5 90267550 90267876 + 0 NA exon (ENSMUSG00000055204.15, exon 1 of 1) protein_coding-exon (ENSMUSG00000055204.15, exon 1 of 1) -51691 ENSMUSG00000035505.14 ENSMUSG00000035505 ENSMUST00000148480 Cox18 protein_coding Interval_43553 chr13 33089694 33092284 + 0 NA intron (ENSMUSG00000051029.8, intron 4 of 6) protein_coding-intron (ENSMUSG00000051029.8, intron 4 of 6) 12414 ENSMUSG00000051029.8 ENSMUSG00000051029 ENSMUST00000016951 Serpinb1b protein_coding Interval_96071 chr2 119593763 119594992 + 0 NA promoter-TSS (ENSMUSG00000085438.1) lincRNA-promoter-TSS (ENSMUSG00000085438.1) 74 ENSMUSG00000085438.1 ENSMUSG00000085438 ENSMUST00000153581 Oip5os1 lincRNA Interval_5245 chr1 86747327 86747547 + 0 NA intron (ENSMUSG00000053333.15, intron 3 of 20) protein_coding-intron (ENSMUSG00000053333.15, intron 3 of 20) 17928 ENSMUSG00000100225.1 ENSMUSG00000100225 ENSMUST00000190273 Gm29097 processed_pseudogene Interval_58138 chr15 28398677 28399133 + 0 NA intron (ENSMUSG00000022262.8, intron 59 of 78) protein_coding-intron (ENSMUSG00000022262.8, intron 59 of 78) 106286 ENSMUSG00000115473.1 ENSMUSG00000115473 ENSMUST00000228335 Gm49278 processed_pseudogene Interval_31291 chr11 99374545 99374761 + 0 NA exon (ENSMUSG00000055937.1, exon 1 of 8) protein_coding-exon (ENSMUSG00000055937.1, exon 1 of 8) 250 ENSMUSG00000055937.1 ENSMUSG00000055937 ENSMUST00000006963 Krt28 protein_coding Interval_29071 chr11 80167792 80169303 + 0 NA intron (ENSMUSG00000020709.15, intron 6 of 10) protein_coding-intron (ENSMUSG00000020709.15, intron 6 of 10) 9082 ENSMUSG00000086507.1 ENSMUSG00000086507 ENSMUST00000140556 Adap2os antisense Interval_145038 chr7 29592212 29592567 + 0 NA Intergenic Intergenic -18461 ENSMUSG00000100111.2 ENSMUSG00000100111 ENSMUST00000187265 A330087D11Rik lincRNA Interval_112616 chr4 43585981 43587760 + 0 NA exon (ENSMUSG00000028468.15, exon 9 of 9) protein_coding-exon (ENSMUSG00000028468.15, exon 9 of 9) -1202 ENSMUSG00000085351.1 ENSMUSG00000085351 ENSMUST00000153232 Gm12472 antisense Interval_31994 chr11 104342904 104343121 + 0 NA exon (ENSMUSG00000018412.16, exon 9 of 15) protein_coding-exon (ENSMUSG00000018412.16, exon 9 of 15) 82288 ENSMUSG00000106014.1 ENSMUSG00000106014 ENSMUST00000195891 Gm47315 miRNA Interval_13093 chr10 11305590 11306069 + 0 NA Intergenic Intergenic 24499 ENSMUSG00000047648.13 ENSMUSG00000047648 ENSMUST00000070300 Fbxo30 protein_coding Interval_42232 chr13 10539103 10539389 + 0 NA TTS (ENSMUSG00000113758.1) lincRNA-TTS (ENSMUSG00000113758.1) -15441 ENSMUSG00000097009.2 ENSMUSG00000097009 ENSMUST00000222084 Gm26861 antisense Interval_86841 chr19 44293009 44295993 + 0 NA intron (ENSMUSG00000025203.6, intron 1 of 5) protein_coding-intron (ENSMUSG00000025203.6, intron 1 of 5) 425 ENSMUSG00000025203.6 ENSMUSG00000025203 ENSMUST00000237039 Scd2 protein_coding Interval_149912 chr7 102512470 102514019 + 0 NA Intergenic Intergenic 7765 ENSMUSG00000109822.1 ENSMUSG00000109822 ENSMUST00000210437 Gm8556 processed_pseudogene Interval_91121 chr2 35265139 35265903 + 0 NA intron (ENSMUSG00000026879.14, intron 1 of 5) protein_coding-intron (ENSMUSG00000026879.14, intron 1 of 5) 9137 ENSMUSG00000026879.14 ENSMUSG00000026879 ENSMUST00000124323 Gsn protein_coding Interval_92867 chr2 67247018 67247369 + 0 NA intron (ENSMUSG00000027022.14, intron 3 of 10) protein_coding-intron (ENSMUSG00000027022.14, intron 2 of 10) -52458 ENSMUSG00000086908.1 ENSMUSG00000086908 ENSMUST00000147939 Gm13598 lincRNA Interval_94188 chr2 84936104 84937063 + 0 NA promoter-TSS (ENSMUSG00000027074.14) protein_coding-promoter-TSS (ENSMUSG00000027074.14) -307 ENSMUSG00000027074.14 ENSMUSG00000027074 ENSMUST00000155537 Slc43a3 protein_coding Interval_116565 chr4 115731479 115732149 + 0 NA Intergenic Intergenic 24563 ENSMUSG00000081172.1 ENSMUSG00000081172 ENSMUST00000120013 Gm12849 processed_pseudogene Interval_52738 chr14 49218863 49219148 + 0 NA TTS (ENSMUSG00000021850.14) protein_coding-TTS (ENSMUSG00000021850.14) 1226 ENSMUSG00000115772.1 ENSMUSG00000115772 ENSMUST00000226956 Gm48935 lincRNA Interval_154483 chr8 18610364 18610766 + 0 NA intron (ENSMUSG00000039842.15, intron 3 of 11) protein_coding-intron (ENSMUSG00000039842.15, intron 3 of 13) 3544 ENSMUSG00000077287.1 ENSMUSG00000077287 ENSMUST00000104099 Gm25763 snoRNA Interval_50901 chr14 20663654 20663961 + 0 NA intron (ENSMUSG00000039376.13, intron 3 of 3) protein_coding-intron (ENSMUSG00000039376.13, intron 3 of 3) 767 ENSMUSG00000039376.13 ENSMUSG00000039376 ENSMUST00000117386 Synpo2l protein_coding Interval_146765 chr7 50115030 50115849 + 0 NA intron (ENSMUSG00000055409.14, intron 1 of 5) protein_coding-intron (ENSMUSG00000055409.14, intron 3 of 19) 17129 ENSMUSG00000055409.14 ENSMUSG00000055409 ENSMUST00000154410 Nell1 protein_coding Interval_63737 chr15 103165492 103166156 + 0 NA promoter-TSS (ENSMUSG00000036061.10) protein_coding-promoter-TSS (ENSMUSG00000036061.10) -2506 ENSMUSG00000036061.10 ENSMUSG00000036061 ENSMUST00000230529 Smug1 protein_coding Interval_41596 chr12 116653633 116654249 + 0 NA intron (ENSMUSG00000056553.14, intron 2 of 4) protein_coding-intron (ENSMUSG00000056553.14, intron 2 of 22) 56688 ENSMUSG00000101814.1 ENSMUSG00000101814 ENSMUST00000186869 Gm17807 processed_pseudogene Interval_134757 chr6 31240025 31240798 + 0 NA intron (ENSMUSG00000087380.7, intron 1 of 4) processed_transcript-intron (ENSMUSG00000087380.7, intron 1 of 6) -24045 ENSMUSG00000044471.12 ENSMUSG00000044471 ENSMUST00000229779 Lncpint lincRNA Interval_89270 chr2 18688783 18690727 + 0 NA Intergenic Intergenic -9329 ENSMUSG00000037708.16 ENSMUSG00000037708 ENSMUST00000173763 Spag6 protein_coding Interval_171829 chr9 121479486 121480160 + 0 NA Intergenic Intergenic 14687 ENSMUSG00000032532.7 ENSMUSG00000032532 ENSMUST00000217581 Cck protein_coding Interval_18612 chr10 88459255 88460934 + 0 NA intron (ENSMUSG00000020059.9, intron 1 of 7) protein_coding-intron (ENSMUSG00000020059.9, intron 1 of 8) 430 ENSMUSG00000020059.9 ENSMUSG00000020059 ENSMUST00000125612 Sycp3 protein_coding Interval_162981 chr9 14101063 14102476 + 0 NA promoter-TSS (ENSMUSG00000111489.1) lincRNA-promoter-TSS (ENSMUSG00000111489.1) 6354 ENSMUSG00000111479.1 ENSMUSG00000111479 ENSMUST00000217369 Gm47559 lincRNA Interval_138283 chr6 86899019 86899243 + 0 NA intron (ENSMUSG00000057230.14, intron 1 of 2) protein_coding-intron (ENSMUSG00000057230.14, intron 1 of 19) 25345 ENSMUSG00000108152.1 ENSMUSG00000108152 ENSMUST00000205007 Gm44152 TEC Interval_10067 chr1 165583480 165584005 + 0 NA Intergenic Intergenic -1441 ENSMUSG00000104474.1 ENSMUSG00000104474 ENSMUST00000191944 Gm38210 TEC Interval_134724 chr6 30957400 30959272 + 0 NA exon (ENSMUSG00000073209.4, exon 1 of 1) protein_coding-exon (ENSMUSG00000073209.4, exon 1 of 1) 742 ENSMUSG00000073209.4 ENSMUSG00000073209 ENSMUST00000101589 Klf14 protein_coding Interval_104035 chr3 57575054 57576818 + 0 NA promoter-TSS (ENSMUSG00000027803.14) protein_coding-promoter-TSS (ENSMUSG00000027803.14) -26 ENSMUSG00000027803.14 ENSMUSG00000027803 ENSMUST00000120977 Wwtr1 protein_coding Interval_127295 chr5 102186604 102187296 + 0 NA Intergenic Intergenic 24659 ENSMUSG00000106189.1 ENSMUSG00000106189 ENSMUST00000196547 Gm42933 processed_pseudogene Interval_30911 chr11 97186930 97188817 + 0 NA promoter-TSS (ENSMUSG00000001440.5) protein_coding-promoter-TSS (ENSMUSG00000001440.5) -22473 ENSMUSG00000001440.5 ENSMUSG00000001440 ENSMUST00000153727 Kpnb1 protein_coding Interval_83387 chr18 84804507 84804697 + 0 NA intron (ENSMUSG00000117781.1, intron 10 of 10) protein_coding-intron (ENSMUSG00000117781.1, intron 10 of 10) -17400 ENSMUSG00000088070.1 ENSMUSG00000088070 ENSMUST00000157445 Gm22819 misc_RNA Interval_93953 chr2 79892078 79892678 + 0 NA intron (ENSMUSG00000059173.19, intron 6 of 15) protein_coding-intron (ENSMUSG00000059173.19, intron 6 of 13) 105787 ENSMUSG00000034683.12 ENSMUSG00000034683 ENSMUST00000144432 Ppp1r1c protein_coding Interval_171934 chr9 122701343 122702159 + 0 NA intron (ENSMUSG00000111577.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000111577.1, intron 1 of 1) 12122 ENSMUSG00000111068.1 ENSMUSG00000111068 ENSMUST00000215101 Gm35501 lincRNA Interval_107997 chr3 119256420 119256765 + 0 NA intron (ENSMUSG00000033308.16, intron 18 of 22) protein_coding-intron (ENSMUSG00000033308.16, intron 18 of 22) 382282 ENSMUSG00000087806.1 ENSMUSG00000087806 ENSMUST00000157181 Gm23432 snoRNA Interval_35574 chr12 24950555 24950911 + 0 NA intron (ENSMUSG00000020646.17, intron 5 of 9) protein_coding-intron (ENSMUSG00000020646.17, intron 5 of 9) -24260 ENSMUSG00000036333.11 ENSMUSG00000036333 ENSMUST00000222481 Kidins220 protein_coding Interval_119965 chr4 141138625 141140354 + 0 NA intron (ENSMUSG00000040842.17, intron 1 of 3) protein_coding-intron (ENSMUSG00000040842.17, intron 1 of 2) 238 ENSMUSG00000040842.17 ENSMUSG00000040842 ENSMUST00000128444 Szrd1 protein_coding Interval_1932 chr1 34665808 34666576 + 0 NA Intergenic Intergenic -30003 ENSMUSG00000104098.1 ENSMUSG00000104098 ENSMUST00000195095 AA619741 processed_pseudogene Interval_165449 chr9 48197266 48197639 + 0 NA intron (ENSMUSG00000044229.9, intron 1 of 10) protein_coding-intron (ENSMUSG00000044229.9, intron 1 of 10) -38487 ENSMUSG00000110924.1 ENSMUSG00000110924 ENSMUST00000214538 Gm40518 lincRNA Interval_17344 chr10 76001769 76003504 + 0 NA intron (ENSMUSG00000033255.8, intron 11 of 13) protein_coding-intron (ENSMUSG00000033255.8, intron 11 of 13) -6290 ENSMUSG00000098817.1 ENSMUSG00000098817 ENSMUST00000184957 Mir6409 miRNA Interval_53200 chr14 55085269 55086903 + 0 NA intron (ENSMUSG00000040721.9, intron 1 of 9) protein_coding-intron (ENSMUSG00000040721.9, intron 1 of 9) 5956 ENSMUSG00000040721.9 ENSMUSG00000040721 ENSMUST00000188534 Zfhx2 protein_coding Interval_39511 chr12 89049336 89049638 + 0 NA intron (ENSMUSG00000066392.12, intron 2 of 19) protein_coding-intron (ENSMUSG00000066392.12, intron 2 of 19) 205874 ENSMUSG00000103136.1 ENSMUSG00000103136 ENSMUST00000194420 Gm37980 TEC Interval_53522 chr14 58104769 58105200 + 0 NA TTS (ENSMUSG00000091132.1) processed_pseudogene-TTS (ENSMUSG00000091132.1) 1145 ENSMUSG00000091132.1 ENSMUSG00000091132 ENSMUST00000163985 Gm17109 processed_pseudogene Interval_35821 chr12 30581725 30582905 + 0 NA Intergenic Intergenic -4599 ENSMUSG00000043061.10 ENSMUSG00000043061 ENSMUST00000218826 Tmem18 protein_coding Interval_96304 chr2 121421633 121421807 + 0 NA intron (ENSMUSG00000027248.13, intron 1 of 1) protein_coding-intron (ENSMUSG00000027248.13, intron 1 of 12) 7837 ENSMUSG00000027248.13 ENSMUSG00000027248 ENSMUST00000130450 Pdia3 protein_coding Interval_159851 chr8 104365514 104365902 + 0 NA intron (ENSMUSG00000096188.1, intron 1 of 3) protein_coding-intron (ENSMUSG00000096188.1, intron 1 of 3) -2040 ENSMUSG00000110486.1 ENSMUSG00000110486 ENSMUST00000212110 Gm45877 sense_intronic Interval_119265 chr4 136557420 136558011 + 0 NA TTS (ENSMUSG00000036940.15) protein_coding-TTS (ENSMUSG00000036940.15) -5173 ENSMUSG00000036940.15 ENSMUSG00000036940 ENSMUST00000170979 Kdm1a protein_coding Interval_153429 chr7 144696612 144697384 + 0 NA intron (ENSMUSG00000031075.19, intron 1 of 6) protein_coding-intron (ENSMUSG00000031075.19, intron 1 of 24) 41568 ENSMUSG00000031075.19 ENSMUSG00000031075 ENSMUST00000131731 Ano1 protein_coding Interval_96448 chr2 123040370 123040681 + 0 NA Intergenic Intergenic -233399 ENSMUSG00000084372.1 ENSMUSG00000084372 ENSMUST00000119363 Gm13988 processed_pseudogene Interval_122854 chr5 26142408 26143147 + 0 NA Intergenic Intergenic -21356 ENSMUSG00000067698.4 ENSMUSG00000067698 ENSMUST00000088236 Gm10220 protein_coding Interval_120087 chr4 141743219 141743969 + 0 NA Intergenic Intergenic -3078 ENSMUSG00000040706.4 ENSMUSG00000040706 ENSMUST00000038161 Agmat protein_coding Interval_163992 chr9 30538638 30539009 + 0 NA Intergenic Intergenic 25883 ENSMUSG00000111438.1 ENSMUSG00000111438 ENSMUST00000214262 Rps2-ps12 processed_pseudogene Interval_13934 chr10 24810885 24811336 + 0 NA intron (ENSMUSG00000019989.8, intron 4 of 5) protein_coding-intron (ENSMUSG00000019989.8, intron 6 of 24) 25062 ENSMUSG00000019989.8 ENSMUSG00000019989 ENSMUST00000220209 Enpp3 protein_coding Interval_60504 chr15 74504574 74505001 + 0 NA Intergenic Intergenic -59034 ENSMUSG00000093340.1 ENSMUSG00000093340 ENSMUST00000175599 Gm26117 miRNA Interval_32509 chr11 108010072 108010344 + 0 NA intron (ENSMUSG00000050965.14, intron 1 of 5) protein_coding-intron (ENSMUSG00000050965.14, intron 8 of 16) 2597 ENSMUSG00000050965.14 ENSMUSG00000050965 ENSMUST00000134725 Prkca protein_coding Interval_133985 chr6 17325511 17326096 + 0 NA intron (ENSMUSG00000007655.16, intron 3 of 3) protein_coding-intron (ENSMUSG00000007655.16, intron 2 of 2) 19392 ENSMUSG00000007655.16 ENSMUSG00000007655 ENSMUST00000133065 Cav1 protein_coding Interval_115237 chr4 94704951 94705829 + 0 NA Intergenic Intergenic 26210 ENSMUSG00000028576.12 ENSMUSG00000028576 ENSMUST00000152289 Ift74 protein_coding Interval_150915 chr7 116327341 116328094 + 0 NA Intergenic Intergenic 5540 ENSMUSG00000064741.1 ENSMUSG00000064741 ENSMUST00000082807 Snord14a snoRNA Interval_60425 chr15 73674877 73676744 + 0 NA Intergenic Intergenic 29958 ENSMUSG00000099958.1 ENSMUSG00000099958 ENSMUST00000188278 1700010B13Rik processed_transcript Interval_145405 chr7 34522092 34522731 + 0 NA Intergenic Intergenic -24795 ENSMUSG00000086631.2 ENSMUSG00000086631 ENSMUST00000206001 Gm12784 lincRNA Interval_79186 chr18 25523488 25523726 + 0 NA intron (ENSMUSG00000024268.16, intron 3 of 11) protein_coding-intron (ENSMUSG00000024268.16, intron 3 of 12) -22368 ENSMUSG00000024268.16 ENSMUSG00000024268 ENSMUST00000224143 Celf4 protein_coding Interval_72836 chr17 32479674 32480034 + 0 NA intron (ENSMUSG00000061126.5, intron 1 of 4) protein_coding-intron (ENSMUSG00000061126.5, intron 2 of 11) -26196 ENSMUSG00000091586.2 ENSMUSG00000091586 ENSMUST00000236129 Cyp4f17 protein_coding Interval_162856 chr9 10458133 10458347 + 0 NA intron (ENSMUSG00000039488.15, intron 2 of 20) protein_coding-intron (ENSMUSG00000039488.15, intron 2 of 24) -17695 ENSMUSG00000111648.1 ENSMUSG00000111648 ENSMUST00000217614 Gm46103 processed_pseudogene Interval_136240 chr6 52232109 52235082 + 0 NA promoter-TSS (ENSMUSG00000000938.11) protein_coding-promoter-TSS (ENSMUSG00000000938.11) -3063 ENSMUSG00000038227.15 ENSMUSG00000038227 ENSMUST00000174115 Hoxa9 protein_coding Interval_153095 chr7 141322172 141322477 + 0 NA promoter-TSS (ENSMUSG00000058886.9) protein_coding-promoter-TSS (ENSMUSG00000058886.9) 5254 ENSMUSG00000058886.9 ENSMUSG00000058886 ENSMUST00000209608 Deaf1 protein_coding Interval_76428 chr17 80127308 80128444 + 0 NA exon (ENSMUSG00000035473.10, exon 1 of 7) protein_coding-exon (ENSMUSG00000035473.10, exon 1 of 7) -17276 ENSMUSG00000035473.10 ENSMUSG00000035473 ENSMUST00000133955 Galm protein_coding Interval_80960 chr18 51175700 51176222 + 0 NA intron (ENSMUSG00000073565.5, intron 1 of 2) protein_coding-intron (ENSMUSG00000073565.5, intron 1 of 1) 58223 ENSMUSG00000073565.5 ENSMUSG00000073565 ENSMUST00000235541 Prr16 protein_coding Interval_131143 chr5 135404373 135405193 + 0 NA Intergenic Intergenic -10237 ENSMUSG00000053293.9 ENSMUSG00000053293 ENSMUST00000111171 Pom121 protein_coding Interval_56232 chr14 114337105 114338826 + 0 NA Intergenic Intergenic -27162 ENSMUSG00000115658.1 ENSMUSG00000115658 ENSMUST00000226772 Gm19829 processed_pseudogene Interval_172798 chrX 49493485 49494322 + 0 NA promoter-TSS (ENSMUSG00000036198.12) protein_coding-promoter-TSS (ENSMUSG00000036198.12) 8228 ENSMUSG00000036198.12 ENSMUSG00000036198 ENSMUST00000132784 Arhgap36 protein_coding Interval_159620 chr8 95824590 95825440 + 0 NA promoter-TSS (ENSMUSG00000061104.5) protein_coding-promoter-TSS (ENSMUSG00000061104.5) -331 ENSMUSG00000061104.5 ENSMUSG00000061104 ENSMUST00000074053 Sap18b protein_coding Interval_53449 chr14 57585325 57585833 + 0 NA intron (ENSMUSG00000021952.16, intron 21 of 22) protein_coding-intron (ENSMUSG00000021952.16, intron 21 of 22) 13965 ENSMUSG00000097933.2 ENSMUSG00000097933 ENSMUST00000180397 1700039M10Rik bidirectional_promoter_lncRNA Interval_98904 chr2 155918393 155918603 + 0 NA intron (ENSMUSG00000005882.18, intron 2 of 6) protein_coding-intron (ENSMUSG00000005882.18, intron 2 of 6) 11778 ENSMUSG00000005882.18 ENSMUSG00000005882 ENSMUST00000142655 Uqcc1 protein_coding Interval_133943 chr6 16154978 16155502 + 0 NA Intergenic Intergenic -65281 ENSMUSG00000108201.1 ENSMUSG00000108201 ENSMUST00000203751 Gm43991 processed_pseudogene Interval_17162 chr10 73088232 73088492 + 0 NA Intergenic Intergenic -1657 ENSMUSG00000111994.1 ENSMUSG00000111994 ENSMUST00000219920 A330049N07Rik lincRNA Interval_158284 chr8 80819920 80820120 + 0 NA intron (ENSMUSG00000031714.9, intron 1 of 10) protein_coding-intron (ENSMUSG00000031714.9, intron 1 of 9) 10864 ENSMUSG00000031714.9 ENSMUSG00000031714 ENSMUST00000211018 Gab1 protein_coding Interval_107515 chr3 108246228 108246515 + 0 NA Intergenic Intergenic -6460 ENSMUSG00000083462.1 ENSMUSG00000083462 ENSMUST00000119163 Gm12501 processed_pseudogene Interval_139927 chr6 112805915 112806161 + 0 NA intron (ENSMUSG00000030257.16, intron 2 of 2) protein_coding-intron (ENSMUSG00000030257.16, intron 3 of 9) 23421 ENSMUSG00000030257.16 ENSMUSG00000030257 ENSMUST00000143475 Srgap3 protein_coding Interval_71304 chr17 22042323 22042568 + 0 NA intron (ENSMUSG00000053347.15, intron 5 of 5) protein_coding-intron (ENSMUSG00000053347.15, intron 5 of 5) -1906 ENSMUSG00000092147.1 ENSMUSG00000092147 ENSMUST00000167568 Gm7052 unprocessed_pseudogene Interval_139690 chr6 107102694 107103684 + 0 NA Intergenic Intergenic -9074 ENSMUSG00000107981.1 ENSMUSG00000107981 ENSMUST00000203999 Gm6064 processed_pseudogene Interval_94477 chr2 91492340 91492755 + 0 NA exon (ENSMUSG00000027253.15, exon 25 of 38) protein_coding-exon (ENSMUSG00000027253.15, exon 25 of 38) 16228 ENSMUSG00000027253.15 ENSMUSG00000027253 ENSMUST00000151907 Lrp4 protein_coding Interval_30148 chr11 89775948 89777002 + 0 NA intron (ENSMUSG00000047773.15, intron 3 of 21) protein_coding-intron (ENSMUSG00000047773.15, intron 1 of 1) 64791 ENSMUSG00000047773.15 ENSMUSG00000047773 ENSMUST00000207171 Ankfn1 protein_coding Interval_153723 chr8 5302576 5303139 + 0 NA Intergenic Intergenic 30256 ENSMUSG00000064507.1 ENSMUSG00000064507 ENSMUST00000082573 n-R5s94 rRNA Interval_127637 chr5 106015469 106015978 + 0 NA Intergenic Intergenic -34541 ENSMUSG00000105129.1 ENSMUSG00000105129 ENSMUST00000199576 Gm19566 processed_pseudogene Interval_166250 chr9 57798624 57799210 + 0 NA intron (ENSMUSG00000004661.15, intron 4 of 8) protein_coding-intron (ENSMUSG00000004661.15, intron 3 of 7) -2696 ENSMUSG00000004661.15 ENSMUSG00000004661 ENSMUST00000167670 Arid3b protein_coding Interval_26135 chr11 54691342 54691635 + 0 NA promoter-TSS (ENSMUSG00000037533.20) protein_coding-promoter-TSS (ENSMUSG00000037533.20) -32915 ENSMUSG00000093341.2 ENSMUSG00000093341 ENSMUST00000175600 Gm26116 miRNA Interval_27619 chr11 69075586 69076350 + 0 NA TTS (ENSMUSG00000088787.1) snRNA-TTS (ENSMUSG00000088787.1) 953 ENSMUSG00000088787.1 ENSMUSG00000088787 ENSMUST00000158162 Gm25371 snRNA Interval_144519 chr7 25651229 25652008 + 0 NA intron (ENSMUSG00000060376.7, intron 1 of 8) protein_coding-intron (ENSMUSG00000060376.7, intron 1 of 8) -7573 ENSMUSG00000061286.7 ENSMUSG00000061286 ENSMUST00000205614 Exosc5 protein_coding Interval_57757 chr15 19067885 19068278 + 0 NA Intergenic Intergenic -1512 ENSMUSG00000115815.1 ENSMUSG00000115815 ENSMUST00000226382 Gm8328 processed_pseudogene Interval_49746 chr13 114447214 114447475 + 0 NA Intergenic Intergenic 8892 ENSMUSG00000021765.9 ENSMUSG00000021765 ENSMUST00000225068 Fst protein_coding Interval_123811 chr5 35695451 35696220 + 0 NA Intergenic Intergenic -16741 ENSMUSG00000029096.15 ENSMUSG00000029096 ENSMUST00000200810 Htra3 protein_coding Interval_13196 chr10 12963732 12964892 + 0 NA promoter-TSS (ENSMUSG00000039232.12) protein_coding-promoter-TSS (ENSMUSG00000039232.12) -54 ENSMUSG00000039232.12 ENSMUSG00000039232 ENSMUST00000219727 Stx11 protein_coding Interval_154179 chr8 13244807 13245067 + 0 NA intron (ENSMUSG00000031448.12, intron 4 of 7) protein_coding-intron (ENSMUSG00000031448.12, intron 4 of 6) 9225 ENSMUSG00000031448.12 ENSMUSG00000031448 ENSMUST00000171619 Adprhl1 protein_coding Interval_200 KB469742.1 870231 870952 + 0 NA NA NA NA NA Interval_129722 chr5 121960844 121961843 + 0 NA intron (ENSMUSG00000042589.18, intron 1 of 6) protein_coding-intron (ENSMUSG00000042589.18, intron 2 of 22) -63987 ENSMUSG00000105795.1 ENSMUSG00000105795 ENSMUST00000198001 Gm3970 antisense Interval_113372 chr4 53884442 53884909 + 0 NA Intergenic Intergenic 6750 ENSMUSG00000083985.3 ENSMUSG00000083985 ENSMUST00000116189 Gm12468 processed_pseudogene Interval_150615 chr7 112825548 112826660 + 0 NA intron (ENSMUSG00000055320.18, intron 2 of 13) protein_coding-intron (ENSMUSG00000055320.18, intron 2 of 13) 112153 ENSMUSG00000106046.1 ENSMUSG00000106046 ENSMUST00000199696 Gm44462 miRNA Interval_157389 chr8 70079349 70079903 + 0 NA exon (ENSMUSG00000036151.15, exon 10 of 10) protein_coding-exon (ENSMUSG00000036151.15, exon 10 of 10) 4197 ENSMUSG00000036151.15 ENSMUSG00000036151 ENSMUST00000124742 Tm6sf2 protein_coding Interval_6076 chr1 96085000 96085288 + 0 NA Intergenic Intergenic -63386 ENSMUSG00000100062.1 ENSMUSG00000100062 ENSMUST00000190901 1700063A18Rik lincRNA Interval_91885 chr2 51015439 51015738 + 0 NA Intergenic Intergenic 105904 ENSMUSG00000083270.1 ENSMUSG00000083270 ENSMUST00000119159 Gm13498 processed_pseudogene Interval_173122 chrX 72824841 72825670 + 0 NA promoter-TSS (ENSMUSG00000031344.11) protein_coding-promoter-TSS (ENSMUSG00000031344.11) 77 ENSMUSG00000031344.11 ENSMUSG00000031344 ENSMUST00000033711 Gabrq protein_coding Interval_28008 chr11 72151196 72151491 + 0 NA Intergenic Intergenic -15565 ENSMUSG00000040543.16 ENSMUSG00000040543 ENSMUST00000142471 Pitpnm3 protein_coding Interval_140322 chr6 116471832 116472258 + 0 NA promoter-TSS (ENSMUSG00000107914.1) processed_pseudogene-promoter-TSS (ENSMUSG00000107914.1) -809 ENSMUSG00000107914.1 ENSMUSG00000107914 ENSMUST00000203072 Gm44076 processed_pseudogene Interval_135832 chr6 47787900 47788738 + 0 NA promoter-TSS (ENSMUSG00000065701.1) misc_RNA-promoter-TSS (ENSMUSG00000065701.1) -139 ENSMUSG00000065701.1 ENSMUSG00000065701 ENSMUST00000083767 Rny1 misc_RNA Interval_157271 chr8 68847931 68848163 + 0 NA Intergenic Intergenic 19190 ENSMUSG00000031864.16 ENSMUSG00000031864 ENSMUST00000212064 Ints10 protein_coding Interval_27623 chr11 69094731 69095451 + 0 NA promoter-TSS (ENSMUSG00000020893.17) protein_coding-promoter-TSS (ENSMUSG00000020893.17) -5067 ENSMUSG00000020893.17 ENSMUSG00000020893 ENSMUST00000102605 Per1 protein_coding Interval_94975 chr2 102403358 102404493 + 0 NA intron (ENSMUSG00000027189.16, intron 1 of 2) protein_coding-intron (ENSMUSG00000027189.16, intron 1 of 2) -3668 ENSMUSG00000027189.16 ENSMUSG00000027189 ENSMUST00000144110 Trim44 protein_coding Interval_170113 chr9 104847681 104848583 + 0 NA intron (ENSMUSG00000032564.16, intron 2 of 8) protein_coding-intron (ENSMUSG00000032564.16, intron 2 of 15) -24547 ENSMUSG00000032564.16 ENSMUSG00000032564 ENSMUST00000213452 Cpne4 protein_coding Interval_77555 chr17 91484555 91484762 + 0 NA Intergenic Intergenic 51932 ENSMUSG00000117396.1 ENSMUSG00000117396 ENSMUST00000234004 Gm49989 processed_pseudogene Interval_131157 chr5 135476116 135476341 + 0 NA intron (ENSMUSG00000039959.13, intron 1 of 1) protein_coding-intron (ENSMUSG00000039959.13, intron 1 of 30) -2809 ENSMUSG00000106758.1 ENSMUSG00000106758 ENSMUST00000201839 Gm42731 TEC Interval_144929 chr7 28966321 28967326 + 0 NA Intergenic Intergenic -4483 ENSMUSG00000054808.15 ENSMUSG00000054808 ENSMUST00000148196 Actn4 protein_coding Interval_62572 chr15 94771385 94772092 + 0 NA intron (ENSMUSG00000063296.5, intron 3 of 7) protein_coding-intron (ENSMUSG00000063296.5, intron 3 of 7) -90352 ENSMUSG00000095169.1 ENSMUSG00000095169 ENSMUST00000103977 Gm25546 snoRNA Interval_159208 chr8 91684674 91684941 + 0 NA Intergenic Intergenic 4328 ENSMUSG00000110371.1 ENSMUSG00000110371 ENSMUST00000211587 Gm9619 processed_pseudogene Interval_1609 chr1 29846790 29847015 + 0 NA Intergenic Intergenic 33748 ENSMUSG00000118548.1 ENSMUSG00000118548 ENSMUST00000239107 AC125120.1 processed_pseudogene Interval_13694 chr10 21090349 21092012 + 0 NA Intergenic Intergenic -9380 ENSMUSG00000111102.1 ENSMUSG00000111102 ENSMUST00000215135 Gm48189 lincRNA Interval_39614 chr12 91563976 91564225 + 0 NA intron (ENSMUSG00000020962.14, intron 7 of 8) protein_coding-intron (ENSMUSG00000020962.14, intron 7 of 8) 9472 ENSMUSG00000080365.1 ENSMUSG00000080365 ENSMUST00000116715 Gm25776 snoRNA Interval_17632 chr10 78372281 78373269 + 0 NA Intergenic Intergenic -2455 ENSMUSG00000084496.1 ENSMUSG00000084496 ENSMUST00000122547 Gm22514 misc_RNA Interval_89982 chr2 27038417 27039579 + 0 NA exon (ENSMUSG00000087364.1, exon 2 of 2) protein_coding-exon (ENSMUSG00000087364.1, exon 2 of 2) 1713 ENSMUSG00000087364.1 ENSMUSG00000087364 ENSMUST00000149378 Gm13398 protein_coding Interval_63575 chr15 102144392 102145232 + 0 NA exon (ENSMUSG00000023046.6, exon 1 of 4) protein_coding-exon (ENSMUSG00000023046.6, exon 1 of 4) 450 ENSMUSG00000023046.6 ENSMUSG00000023046 ENSMUST00000023807 Igfbp6 protein_coding Interval_111796 chr4 29411890 29412290 + 0 NA Intergenic Intergenic -78066 ENSMUSG00000082058.1 ENSMUSG00000082058 ENSMUST00000118135 Gm11923 processed_pseudogene Interval_16960 chr10 70145768 70146459 + 0 NA intron (ENSMUSG00000048701.13, intron 2 of 8) protein_coding-intron (ENSMUSG00000048701.13, intron 2 of 8) -28898 ENSMUSG00000048701.13 ENSMUSG00000048701 ENSMUST00000135607 Ccdc6 protein_coding Interval_7442 chr1 131381771 131381977 + 0 NA intron (ENSMUSG00000026425.15, intron 4 of 4) protein_coding-intron (ENSMUSG00000026425.15, intron 4 of 22) -3343 ENSMUSG00000104060.1 ENSMUSG00000104060 ENSMUST00000195400 Gm37954 TEC Interval_60731 chr15 76416977 76417821 + 0 NA exon (ENSMUSG00000022558.16, exon 12 of 39) protein_coding-exon (ENSMUSG00000022558.16, exon 12 of 39) -15815 ENSMUSG00000099260.1 ENSMUSG00000099260 ENSMUST00000183412 Mir6954 miRNA Interval_69393 chr16 92652323 92652632 + 0 NA intron (ENSMUSG00000022952.17, intron 3 of 5) protein_coding-intron (ENSMUSG00000022952.17, intron 5 of 7) 39663 ENSMUSG00000097139.3 ENSMUSG00000097139 ENSMUST00000180989 Gm26626 antisense Interval_92665 chr2 62248897 62249184 + 0 NA intron (ENSMUSG00000026904.17, intron 8 of 26) protein_coding-intron (ENSMUSG00000026904.17, intron 7 of 24) -68350 ENSMUSG00000026904.17 ENSMUSG00000026904 ENSMUST00000156534 Slc4a10 protein_coding Interval_2835 chr1 46125680 46126296 + 0 NA intron (ENSMUSG00000041144.12, intron 12 of 64) protein_coding-intron (ENSMUSG00000041144.12, intron 13 of 65) 59135 ENSMUSG00000041144.12 ENSMUSG00000041144 ENSMUST00000185879 Dnah7b protein_coding Interval_99693 chr2 164352944 164353845 + 0 NA TTS (ENSMUSG00000017002.14) protein_coding-TTS (ENSMUSG00000017002.14) 989 ENSMUSG00000098489.1 ENSMUSG00000098489 ENSMUST00000185076 Mir7678 miRNA Interval_147062 chr7 60399763 60400358 + 0 NA Intergenic Intergenic 106856 ENSMUSG00000109220.1 ENSMUSG00000109220 ENSMUST00000208957 Gm30196 processed_pseudogene Interval_78030 chr18 7074693 7074913 + 0 NA Intergenic Intergenic -30668 ENSMUSG00000117381.1 ENSMUSG00000117381 ENSMUST00000235104 Gm10350 processed_pseudogene Interval_3981 chr1 65388081 65388864 + 0 NA exon (ENSMUSG00000025946.13, exon 13 of 13) protein_coding-exon (ENSMUSG00000025946.13, exon 13 of 13) 32649 ENSMUSG00000100503.1 ENSMUSG00000100503 ENSMUST00000191528 Gm28927 unprocessed_pseudogene Interval_13824 chr10 23116558 23117199 + 0 NA exon (ENSMUSG00000010461.15, exon 14 of 19) protein_coding-exon (ENSMUSG00000010461.15, exon 14 of 19) 50093 ENSMUSG00000094033.1 ENSMUSG00000094033 ENSMUST00000178790 Gm24655 snRNA Interval_108913 chr3 133309713 133311037 + 0 NA promoter-TSS (ENSMUSG00000028013.16) protein_coding-promoter-TSS (ENSMUSG00000028013.16) -367 ENSMUSG00000105957.1 ENSMUSG00000105957 ENSMUST00000199187 Gm43254 lincRNA Interval_157806 chr8 73440875 73441815 + 0 NA Intergenic Intergenic -3741 ENSMUSG00000110450.1 ENSMUSG00000110450 ENSMUST00000212078 Gm7943 processed_pseudogene Interval_141264 chr6 126678932 126679541 + 0 NA Intergenic Intergenic -32852 ENSMUSG00000047976.4 ENSMUSG00000047976 ENSMUST00000205171 Kcna1 protein_coding Interval_37054 chr12 57097989 57099434 + 0 NA intron (ENSMUSG00000035472.14, intron 1 of 9) protein_coding-intron (ENSMUSG00000035472.14, intron 1 of 9) 61932 ENSMUSG00000035472.14 ENSMUSG00000035472 ENSMUST00000160892 Slc25a21 protein_coding Interval_127830 chr5 108082338 108083137 + 0 NA intron (ENSMUSG00000029267.17, intron 3 of 14) protein_coding-intron (ENSMUSG00000029267.17, intron 3 of 14) 17020 ENSMUSG00000029267.17 ENSMUSG00000029267 ENSMUST00000129921 Mtf2 protein_coding Interval_144598 chr7 26775104 26776293 + 0 NA Intergenic Intergenic 9143 ENSMUSG00000066704.6 ENSMUSG00000066704 ENSMUST00000138018 Cyp2b19 protein_coding Interval_19472 chr10 99803153 99803503 + 0 NA intron (ENSMUSG00000112304.1, intron 2 of 4) antisense-intron (ENSMUSG00000112304.1, intron 2 of 4) -43670 ENSMUSG00000046934.5 ENSMUSG00000046934 ENSMUST00000056085 Csl protein_coding Interval_8298 chr1 136991151 136991415 + 0 NA Intergenic Intergenic -1013 ENSMUSG00000088970.1 ENSMUSG00000088970 ENSMUST00000158345 Gm23763 snRNA Interval_133414 chr6 4884026 4884987 + 0 NA Intergenic Intergenic 9272 ENSMUSG00000083041.2 ENSMUSG00000083041 ENSMUST00000121071 Gmfg-ps processed_pseudogene Interval_34997 chr12 16544537 16545370 + 0 NA intron (ENSMUSG00000020593.16, intron 18 of 21) protein_coding-intron (ENSMUSG00000020593.16, intron 17 of 20) 66013 ENSMUSG00000020593.16 ENSMUSG00000020593 ENSMUST00000221146 Lpin1 protein_coding Interval_135871 chr6 48076216 48076527 + 0 NA intron (ENSMUSG00000057691.8, intron 1 of 2) protein_coding-intron (ENSMUSG00000057691.8, intron 4 of 6) 5907 ENSMUSG00000057691.8 ENSMUSG00000057691 ENSMUST00000203994 Zfp746 protein_coding Interval_142467 chr6 142602444 142603867 + 0 NA exon (ENSMUSG00000030249.15, exon 33 of 40) protein_coding-exon (ENSMUSG00000030249.15, exon 33 of 40) -11440 ENSMUSG00000104234.1 ENSMUSG00000104234 ENSMUST00000194811 5330439B14Rik antisense Interval_28842 chr11 78696952 78698151 + 0 NA promoter-TSS (ENSMUSG00000017376.15) protein_coding-promoter-TSS (ENSMUSG00000017376.15) 12210 ENSMUSG00000085115.1 ENSMUSG00000085115 ENSMUST00000145158 Gm11197 processed_pseudogene Interval_112114 chr4 34784894 34785598 + 0 NA Intergenic Intergenic -6891 ENSMUSG00000028295.14 ENSMUSG00000028295 ENSMUST00000131295 Smim8 protein_coding Interval_66793 chr16 37671023 37671570 + 0 NA Intergenic Intergenic -16930 ENSMUSG00000022820.4 ENSMUSG00000022820 ENSMUST00000231881 Ndufb4 protein_coding Interval_140226 chr6 115675406 115677325 + 0 NA promoter-TSS (ENSMUSG00000000441.17) protein_coding-promoter-TSS (ENSMUSG00000000441.17) 397 ENSMUSG00000107994.1 ENSMUSG00000107994 ENSMUST00000203121 D830050J10Rik bidirectional_promoter_lncRNA Interval_24398 chr11 32963749 32963981 + 0 NA Intergenic Intergenic 20434 ENSMUSG00000077836.2 ENSMUSG00000077836 ENSMUST00000104646 Gm26052 miRNA Interval_27856 chr11 70417512 70418441 + 0 NA Intergenic Intergenic -7945 ENSMUSG00000018921.11 ENSMUSG00000018921 ENSMUST00000135148 Pelp1 protein_coding Interval_130466 chr5 127923995 127924248 + 0 NA intron (ENSMUSG00000034310.8, intron 4 of 8) protein_coding-intron (ENSMUSG00000034310.8, intron 4 of 8) 45590 ENSMUSG00000085328.2 ENSMUSG00000085328 ENSMUST00000164420 Gm17131 unprocessed_pseudogene Interval_168040 chr9 75546893 75547679 + 0 NA intron (ENSMUSG00000058587.9, intron 1 of 1) protein_coding-intron (ENSMUSG00000058587.9, intron 1 of 9) 12371 ENSMUSG00000058587.9 ENSMUSG00000058587 ENSMUST00000217459 Tmod3 protein_coding Interval_873 chr1 12843522 12843786 + 0 NA intron (ENSMUSG00000016918.15, intron 18 of 21) protein_coding-intron (ENSMUSG00000016918.15, intron 18 of 21) 124190 ENSMUSG00000016918.15 ENSMUSG00000016918 ENSMUST00000185780 Sulf1 protein_coding Interval_123141 chr5 30058133 30060569 + 0 NA exon (ENSMUSG00000025747.12, exon 7 of 7) protein_coding-exon (ENSMUSG00000025747.12, exon 7 of 7) 14225 ENSMUSG00000025747.12 ENSMUSG00000025747 ENSMUST00000138520 Tyms protein_coding Interval_7194 chr1 127679731 127680285 + 0 NA promoter-TSS (ENSMUSG00000026347.13) protein_coding-promoter-TSS (ENSMUSG00000026347.13) -460 ENSMUSG00000026347.13 ENSMUSG00000026347 ENSMUST00000162406 Tmem163 protein_coding Interval_83478 chr18 86555960 86556746 + 0 NA Intergenic Intergenic -45618 ENSMUSG00000117736.1 ENSMUSG00000117736 ENSMUST00000236204 Gm50386 lincRNA Interval_29051 chr11 80066074 80066610 + 0 NA intron (ENSMUSG00000017561.16, intron 1 of 3) protein_coding-intron (ENSMUSG00000017561.16, intron 1 of 7) 14519 ENSMUSG00000017561.16 ENSMUSG00000017561 ENSMUST00000178280 Crlf3 protein_coding Interval_71220 chr17 21298932 21299909 + 0 NA Intergenic Intergenic -12445 ENSMUSG00000058030.5 ENSMUSG00000058030 ENSMUST00000077301 Vmn1r237 protein_coding Interval_134115 chr6 20626758 20627443 + 0 NA Intergenic Intergenic 343890 ENSMUSG00000106763.1 ENSMUSG00000106763 ENSMUST00000201133 Gm19102 processed_pseudogene Interval_144448 chr7 25218829 25221866 + 0 NA promoter-TSS (ENSMUSG00000054499.9) protein_coding-promoter-TSS (ENSMUSG00000054499.9) -488 ENSMUSG00000054499.9 ENSMUSG00000054499 ENSMUST00000206498 Dedd2 protein_coding Interval_3737 chr1 62664810 62665936 + 0 NA Intergenic Intergenic 4534 ENSMUSG00000084333.1 ENSMUSG00000084333 ENSMUST00000118720 Gm11599 processed_pseudogene Interval_31878 chr11 103540401 103540587 + 0 NA intron (ENSMUSG00000034239.14, intron 10 of 13) protein_coding-intron (ENSMUSG00000034239.14, intron 10 of 13) -35897 ENSMUSG00000078632.4 ENSMUSG00000078632 ENSMUST00000153273 Lrrc37a protein_coding Interval_105545 chr3 87551204 87551535 + 0 NA exon (ENSMUSG00000118505.1, exon 1 of 6) protein_coding-exon (ENSMUSG00000118505.1, exon 1 of 6) 1270 ENSMUSG00000118505.1 ENSMUSG00000118505 ENSMUST00000238853 ETV3L protein_coding Interval_1550 chr1 25403401 25403576 + 0 NA intron (ENSMUSG00000033569.17, intron 15 of 30) protein_coding-intron (ENSMUSG00000033569.17, intron 14 of 29) -37668 ENSMUSG00000104100.1 ENSMUSG00000104100 ENSMUST00000192216 Gm37880 TEC Interval_53183 chr14 54978898 54980103 + 0 NA exon (ENSMUSG00000053093.16, exon 28 of 41) protein_coding-exon (ENSMUSG00000053093.16, exon 28 of 41) 107 ENSMUSG00000115610.1 ENSMUSG00000115610 ENSMUST00000228715 Gm31251 antisense Interval_75031 chr17 61601892 61602217 + 0 NA Intergenic Intergenic 179578 ENSMUSG00000098123.1 ENSMUSG00000098123 ENSMUST00000182638 Gm4518 processed_pseudogene Interval_154508 chr8 18779132 18779354 + 0 NA intron (ENSMUSG00000039842.15, intron 12 of 13) protein_coding-intron (ENSMUSG00000039842.15, intron 12 of 13) -67034 ENSMUSG00000031467.10 ENSMUSG00000031467 ENSMUST00000033847 Agpat5 protein_coding Interval_107198 chr3 104531311 104531762 + 0 NA Intergenic Intergenic -20223 ENSMUSG00000105659.1 ENSMUSG00000105659 ENSMUST00000196088 4930509H03Rik sense_intronic Interval_17752 chr10 79899120 79899302 + 0 NA exon (ENSMUSG00000013833.15, exon 8 of 15) protein_coding-exon (ENSMUSG00000013833.15, exon 8 of 15) 8358 ENSMUSG00000061780.6 ENSMUSG00000061780 ENSMUST00000061653 Cfd protein_coding Interval_166164 chr9 57189568 57189909 + 0 NA Intergenic Intergenic 14463 ENSMUSG00000100282.1 ENSMUSG00000100282 ENSMUST00000185243 1700041C23Rik lincRNA Interval_15341 chr10 44779764 44780048 + 0 NA intron (ENSMUSG00000110893.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000110893.1, intron 1 of 1) -41006 ENSMUSG00000111494.1 ENSMUSG00000111494 ENSMUST00000213122 4930431F10Rik lincRNA Interval_46078 chr13 61032518 61032788 + 0 NA Intergenic Intergenic 5534 ENSMUSG00000021439.8 ENSMUSG00000021439 ENSMUST00000144401 Ctsq protein_coding Interval_154665 chr8 22457132 22457395 + 0 NA Intergenic Intergenic 19592 ENSMUSG00000031534.15 ENSMUSG00000031534 ENSMUST00000033935 Smim19 protein_coding Interval_86472 chr19 40851377 40851879 + 0 NA Intergenic Intergenic -16688 ENSMUSG00000097740.2 ENSMUSG00000097740 ENSMUST00000181195 E030044B06Rik lincRNA Interval_133934 chr6 15790014 15790560 + 0 NA intron (ENSMUSG00000041390.18, intron 4 of 4) protein_coding-intron (ENSMUSG00000041390.18, intron 4 of 4) -21036 ENSMUSG00000108046.1 ENSMUSG00000108046 ENSMUST00000204851 Gm43924 TEC Interval_83343 chr18 84410190 84410536 + 0 NA intron (ENSMUSG00000048410.17, intron 4 of 8) protein_coding-intron (ENSMUSG00000048410.17, intron 2 of 2) 24572 ENSMUSG00000048410.17 ENSMUSG00000048410 ENSMUST00000182297 Zfp407 protein_coding Interval_141119 chr6 125101618 125102473 + 0 NA intron (ENSMUSG00000063870.12, intron 7 of 38) protein_coding-intron (ENSMUSG00000063870.12, intron 7 of 38) 5021 ENSMUSG00000098762.1 ENSMUSG00000098762 ENSMUST00000183346 Mir7045 miRNA Interval_42084 chr13 8333887 8334095 + 0 NA intron (ENSMUSG00000052551.16, intron 1 of 10) protein_coding-intron (ENSMUSG00000052551.16, intron 1 of 9) -34848 ENSMUSG00000113978.1 ENSMUSG00000113978 ENSMUST00000223414 Gm48260 processed_pseudogene Interval_134531 chr6 29379352 29379532 + 0 NA TTS (ENSMUSG00000058831.13) protein_coding-TTS (ENSMUSG00000058831.13) 9026 ENSMUSG00000058831.13 ENSMUSG00000058831 ENSMUST00000173653 Opn1sw protein_coding Interval_42575 chr13 15707535 15708374 + 0 NA intron (ENSMUSG00000021318.15, intron 10 of 11) protein_coding-intron (ENSMUSG00000021318.15, intron 10 of 14) 58019 ENSMUSG00000113191.1 ENSMUSG00000113191 ENSMUST00000220835 Gm48343 processed_pseudogene Interval_32660 chr11 109479926 109480170 + 0 NA intron (ENSMUSG00000020604.13, intron 1 of 3) protein_coding-intron (ENSMUSG00000020604.13, intron 1 of 13) 6674 ENSMUSG00000020604.13 ENSMUSG00000020604 ENSMUST00000106696 Arsg protein_coding Interval_105820 chr3 89501183 89502194 + 0 NA Intergenic Intergenic 47147 ENSMUSG00000027952.16 ENSMUSG00000027952 ENSMUST00000184515 Pmvk protein_coding Interval_96525 chr2 125278585 125279097 + 0 NA Intergenic Intergenic 4277 ENSMUSG00000085797.1 ENSMUSG00000085797 ENSMUST00000146845 A530010F05Rik antisense Interval_8204 chr1 136482205 136483134 + 0 NA intron (ENSMUSG00000041498.13, intron 7 of 27) protein_coding-intron (ENSMUSG00000041498.13, intron 9 of 29) 14734 ENSMUSG00000041498.13 ENSMUSG00000041498 ENSMUST00000195274 Kif14 protein_coding Interval_108539 chr3 128298681 128298871 + 0 NA Intergenic Intergenic -17685 ENSMUSG00000106119.1 ENSMUSG00000106119 ENSMUST00000197882 Gm43656 processed_pseudogene Interval_92870 chr2 67398355 67398564 + 0 NA intron (ENSMUSG00000027022.14, intron 4 of 10) protein_coding-intron (ENSMUSG00000027022.14, intron 3 of 10) -1968 ENSMUSG00000087043.1 ENSMUSG00000087043 ENSMUST00000134476 Gm13599 antisense Interval_100003 chr2 166403006 166403858 + 0 NA Intergenic Intergenic -5275 ENSMUSG00000087617.1 ENSMUSG00000087617 ENSMUST00000132465 Gm14268 lincRNA Interval_103923 chr3 55005631 55005949 + 0 NA Intergenic Intergenic 49247 ENSMUSG00000027793.6 ENSMUSG00000027793 ENSMUST00000199352 Ccna1 protein_coding Interval_52823 chr14 50891515 50891783 + 0 NA exon (ENSMUSG00000090799.2, exon 3 of 3) protein_coding-exon (ENSMUSG00000090799.2, exon 3 of 3) 5858 ENSMUSG00000090799.2 ENSMUSG00000090799 ENSMUST00000170855 Klhl33 protein_coding Interval_135680 chr6 43292410 43293047 + 0 NA Intergenic Intergenic 10114 ENSMUSG00000033542.13 ENSMUSG00000033542 ENSMUST00000182647 Arhgef5 protein_coding Interval_199 KB469742.1 18543 19139 + 0 NA NA NA NA NA Interval_53159 chr14 54787082 54787814 + 0 NA Intergenic Intergenic -5502 ENSMUSG00000022180.7 ENSMUSG00000022180 ENSMUST00000226646 Slc7a8 protein_coding Interval_98633 chr2 153694092 153695158 + 0 NA Intergenic Intergenic -2027 ENSMUSG00000082079.2 ENSMUSG00000082079 ENSMUST00000119996 Dnmt3c protein_coding Interval_69269 chr16 91818002 91818942 + 0 NA exon (ENSMUSG00000022957.20, exon 12 of 29) protein_coding-exon (ENSMUSG00000022957.20, exon 12 of 29) -85591 ENSMUSG00000022957.20 ENSMUSG00000022957 ENSMUST00000137575 Itsn1 protein_coding Interval_117299 chr4 122829833 122830103 + 0 NA Intergenic Intergenic -6278 ENSMUSG00000028657.14 ENSMUSG00000028657 ENSMUST00000097902 Ppt1 protein_coding Interval_57160 chr15 7081387 7082460 + 0 NA Intergenic Intergenic -8691 ENSMUSG00000054263.12 ENSMUSG00000054263 ENSMUST00000171588 Lifr protein_coding Interval_89212 chr2 18093916 18094617 + 0 NA intron (ENSMUSG00000026743.16, intron 4 of 23) protein_coding-intron (ENSMUSG00000026743.16, intron 3 of 22) 29425 ENSMUSG00000026743.16 ENSMUSG00000026743 ENSMUST00000149786 Mllt10 protein_coding Interval_64980 chr16 17668801 17669045 + 0 NA intron (ENSMUSG00000012114.17, intron 8 of 17) protein_coding-intron (ENSMUSG00000012114.17, intron 8 of 17) 22223 ENSMUSG00000041617.10 ENSMUSG00000041617 ENSMUST00000183279 Ccdc74a protein_coding Interval_153948 chr8 11448195 11448490 + 0 NA exon (ENSMUSG00000031503.13, exon 48 of 48) protein_coding-exon (ENSMUSG00000031503.13, exon 48 of 48) 7233 ENSMUSG00000031503.13 ENSMUSG00000031503 ENSMUST00000146219 Col4a2 protein_coding Interval_28631 chr11 77454198 77457083 + 0 NA TTS (ENSMUSG00000037926.15) protein_coding-TTS (ENSMUSG00000037926.15) -7005 ENSMUSG00000020836.15 ENSMUSG00000020836 ENSMUST00000079770 Coro6 protein_coding Interval_128960 chr5 116320131 116320473 + 0 NA Intergenic Intergenic 7942 ENSMUSG00000086715.1 ENSMUSG00000086715 ENSMUST00000128473 B230112J18Rik lincRNA Interval_146770 chr7 50275024 50275296 + 0 NA intron (ENSMUSG00000055409.14, intron 11 of 11) protein_coding-intron (ENSMUSG00000055409.14, intron 11 of 19) 176850 ENSMUSG00000055409.14 ENSMUSG00000055409 ENSMUST00000154410 Nell1 protein_coding Interval_69192 chr16 91232269 91233589 + 0 NA Intergenic Intergenic 7472 ENSMUSG00000039830.9 ENSMUSG00000039830 ENSMUST00000035608 Olig2 protein_coding Interval_9485 chr1 157575105 157575488 + 0 NA Intergenic Intergenic -21010 ENSMUSG00000103021.1 ENSMUSG00000103021 ENSMUST00000191776 Gm37682 processed_pseudogene Interval_154926 chr8 25101548 25103095 + 0 NA promoter-TSS (ENSMUSG00000031557.16) protein_coding-promoter-TSS (ENSMUSG00000031557.16) 142 ENSMUSG00000110148.1 ENSMUSG00000110148 ENSMUST00000210097 5830408C22Rik processed_transcript Interval_84153 chr19 7582887 7584351 + 0 NA intron (ENSMUSG00000060675.13, intron 4 of 4) protein_coding-intron (ENSMUSG00000060675.13, intron 4 of 4) 23574 ENSMUSG00000024972.16 ENSMUSG00000024972 ENSMUST00000079902 Lgals12 protein_coding Interval_159631 chr8 95871302 95871709 + 0 NA exon (ENSMUSG00000110711.1, exon 1 of 1) TEC-exon (ENSMUSG00000110711.1, exon 1 of 1) 691 ENSMUSG00000110711.1 ENSMUSG00000110711 ENSMUST00000212190 Gm45760 TEC Interval_43059 chr13 23530309 23531840 + 0 NA promoter-TSS (ENSMUSG00000060981.7) protein_coding-promoter-TSS (ENSMUSG00000060981.7) 24 ENSMUSG00000060981.7 ENSMUSG00000060981 ENSMUST00000102972 H4c8 protein_coding Interval_114654 chr4 83493060 83493403 + 0 NA Intergenic Intergenic 7530 ENSMUSG00000082416.1 ENSMUSG00000082416 ENSMUST00000121795 Gm11414 processed_pseudogene Interval_115499 chr4 99516766 99517111 + 0 NA Intergenic Intergenic 3528 ENSMUSG00000080803.1 ENSMUSG00000080803 ENSMUST00000117528 Gm12683 processed_pseudogene Interval_62121 chr15 87365663 87366286 + 0 NA Intergenic Intergenic 122424 ENSMUSG00000115930.1 ENSMUSG00000115930 ENSMUST00000229090 A930027H12Rik lincRNA Interval_129890 chr5 122935856 122936598 + 0 NA intron (ENSMUSG00000029475.17, intron 9 of 10) protein_coding-intron (ENSMUSG00000029475.17, intron 9 of 22) -14679 ENSMUSG00000029475.17 ENSMUSG00000029475 ENSMUST00000150543 Kdm2b protein_coding Interval_173321 chrX 79517152 79517607 + 0 NA promoter-TSS (ENSMUSG00000073077.7) protein_coding-promoter-TSS (ENSMUSG00000073077.7) 118203 ENSMUSG00000046942.17 ENSMUSG00000046942 ENSMUST00000052283 Mageb16 protein_coding Interval_53663 chr14 60715150 60716980 + 0 NA intron (ENSMUSG00000021990.16, intron 3 of 6) protein_coding-intron (ENSMUSG00000021990.16, intron 4 of 12) -16841 ENSMUSG00000021990.16 ENSMUSG00000021990 ENSMUST00000162939 Spata13 protein_coding Interval_21872 chr11 4873607 4875119 + 0 NA intron (ENSMUSG00000034285.15, intron 1 of 3) protein_coding-intron (ENSMUSG00000034285.15, intron 1 of 9) -8843 ENSMUSG00000034285.15 ENSMUSG00000034285 ENSMUST00000141269 Nipsnap1 protein_coding Interval_159031 chr8 88972514 88973183 + 0 NA Intergenic Intergenic -51887 ENSMUSG00000099078.1 ENSMUSG00000099078 ENSMUST00000183771 Mir8110 miRNA Interval_39219 chr12 85954118 85955807 + 0 NA intron (ENSMUSG00000012609.19, intron 3 of 6) protein_coding-intron (ENSMUSG00000012609.19, intron 28 of 33) -7039 ENSMUSG00000012609.19 ENSMUSG00000012609 ENSMUST00000220906 Ttll5 protein_coding Interval_79479 chr18 32239543 32241012 + 0 NA promoter-TSS (ENSMUSG00000024382.13) protein_coding-promoter-TSS (ENSMUSG00000024382.13) -77 ENSMUSG00000024382.13 ENSMUSG00000024382 ENSMUST00000129023 Ercc3 protein_coding Interval_114764 chr4 84867162 84867685 + 0 NA Intergenic Intergenic -17042 ENSMUSG00000038070.15 ENSMUSG00000038070 ENSMUST00000107190 Cntln protein_coding Interval_104870 chr3 76762327 76762549 + 0 NA Intergenic Intergenic -59621 ENSMUSG00000103702.1 ENSMUSG00000103702 ENSMUST00000195775 Gm37290 processed_pseudogene Interval_97707 chr2 143053672 143054226 + 0 NA Intergenic Intergenic -9112 ENSMUSG00000008333.12 ENSMUSG00000008333 ENSMUST00000134091 Snrpb2 protein_coding Interval_19383 chr10 98706458 98706833 + 0 NA Intergenic Intergenic -6935 ENSMUSG00000112647.1 ENSMUSG00000112647 ENSMUST00000217680 Gm5427 lincRNA Interval_59004 chr15 41612146 41612481 + 0 NA intron (ENSMUSG00000022307.16, intron 2 of 15) protein_coding-intron (ENSMUSG00000022307.16, intron 2 of 15) 176598 ENSMUSG00000097232.1 ENSMUSG00000097232 ENSMUST00000180418 Gm26854 antisense Interval_32562 chr11 108605295 108606229 + 0 NA intron (ENSMUSG00000020728.17, intron 1 of 2) protein_coding-intron (ENSMUSG00000020728.17, intron 20 of 27) 535 ENSMUSG00000020728.17 ENSMUSG00000020728 ENSMUST00000132978 Cep112 protein_coding Interval_157554 chr8 71396441 71397390 + 0 NA promoter-TSS (ENSMUSG00000031820.9) protein_coding-promoter-TSS (ENSMUSG00000031820.9) -1113 ENSMUSG00000034911.8 ENSMUSG00000034911 ENSMUST00000213000 Ushbp1 protein_coding Interval_23184 chr11 20400153 20401223 + 0 NA Intergenic Intergenic -45724 ENSMUSG00000083878.3 ENSMUSG00000083878 ENSMUST00000119032 Gm12034 processed_pseudogene Interval_47765 chr13 92467477 92468337 + 0 NA intron (ENSMUSG00000034334.8, intron 3 of 4) protein_coding-intron (ENSMUSG00000034334.8, intron 4 of 5) 16108 ENSMUSG00000034334.8 ENSMUSG00000034334 ENSMUST00000040106 Fam151b protein_coding Interval_165050 chr9 44140211 44141021 + 0 NA TTS (ENSMUSG00000032135.15) protein_coding-TTS (ENSMUSG00000032135.15) 5955 ENSMUSG00000032135.15 ENSMUSG00000032135 ENSMUST00000132490 Mcam protein_coding Interval_14951 chr10 41420572 41421271 + 0 NA intron (ENSMUSG00000091415.5, intron 32 of 39) protein_coding-intron (ENSMUSG00000091415.5, intron 32 of 39) -12644 ENSMUSG00000098818.1 ENSMUSG00000098818 ENSMUST00000183534 Gm27783 rRNA Interval_71333 chr17 22359982 22361723 + 0 NA promoter-TSS (ENSMUSG00000044501.17) protein_coding-promoter-TSS (ENSMUSG00000044501.17) 548 ENSMUSG00000033972.9 ENSMUSG00000033972 ENSMUST00000115535 Zfp944 protein_coding Interval_106039 chr3 91143781 91144044 + 0 NA Intergenic Intergenic -53109 ENSMUSG00000091175.2 ENSMUSG00000091175 ENSMUST00000166173 S100a7l2 protein_coding Interval_9694 chr1 161086303 161086637 + 0 NA TTS (ENSMUSG00000026708.16) protein_coding-TTS (ENSMUSG00000026708.16) 9154 ENSMUSG00000026705.16 ENSMUSG00000026705 ENSMUST00000145736 Klhl20 protein_coding Interval_100867 chr2 173007568 173007849 + 0 NA intron (ENSMUSG00000027509.11, intron 5 of 7) protein_coding-intron (ENSMUSG00000027509.11, intron 5 of 11) -4753 ENSMUSG00000027509.11 ENSMUSG00000027509 ENSMUST00000138237 Rae1 protein_coding Interval_38236 chr12 76564622 76564831 + 0 NA intron (ENSMUSG00000052609.9, intron 7 of 17) protein_coding-intron (ENSMUSG00000052609.9, intron 7 of 18) -16874 ENSMUSG00000112388.1 ENSMUSG00000112388 ENSMUST00000218453 AI463170 antisense Interval_97630 chr2 141234479 141235195 + 0 NA intron (ENSMUSG00000074763.5, intron 1 of 1) protein_coding-intron (ENSMUSG00000068205.14, intron 5 of 17) -2467 ENSMUSG00000074763.5 ENSMUSG00000074763 ENSMUST00000178769 Macrod2os2 antisense Interval_140236 chr6 115727224 115728114 + 0 NA Intergenic Intergenic -3837 ENSMUSG00000088358.1 ENSMUSG00000088358 ENSMUST00000157733 Gm24008 snoRNA Interval_45756 chr13 57741163 57741405 + 0 NA intron (ENSMUSG00000056222.15, intron 2 of 10) protein_coding-intron (ENSMUSG00000056222.15, intron 1 of 9) 167048 ENSMUSG00000056222.15 ENSMUSG00000056222 ENSMUST00000185905 Spock1 protein_coding Interval_146667 chr7 49303616 49304757 + 0 NA promoter-TSS (ENSMUSG00000052512.17) protein_coding-promoter-TSS (ENSMUSG00000052512.17) -39288 ENSMUSG00000052512.17 ENSMUSG00000052512 ENSMUST00000183715 Nav2 protein_coding Interval_123577 chr5 33589275 33589938 + 0 NA Intergenic Intergenic 39456 ENSMUSG00000037339.17 ENSMUSG00000037339 ENSMUST00000140043 Fam53a protein_coding Interval_156928 chr8 61759469 61760562 + 0 NA promoter-TSS (ENSMUSG00000058056.16) protein_coding-promoter-TSS (ENSMUSG00000058056.16) 61501 ENSMUSG00000110131.1 ENSMUSG00000110131 ENSMUST00000210904 Gm18066 processed_pseudogene Interval_48638 chr13 100777451 100777736 + 0 NA Intergenic Intergenic -1810 ENSMUSG00000045273.8 ENSMUSG00000045273 ENSMUST00000136694 Cenph protein_coding Interval_58462 chr15 34844777 34844997 + 0 NA Intergenic Intergenic 6838 ENSMUSG00000050963.7 ENSMUSG00000050963 ENSMUST00000228725 Kcns2 protein_coding Interval_6663 chr1 118613734 118614203 + 0 NA Intergenic Intergenic -13977 ENSMUSG00000026380.10 ENSMUSG00000026380 ENSMUST00000027629 Tfcp2l1 protein_coding Interval_145490 chr7 35169233 35169711 + 0 NA Intergenic Intergenic -17010 ENSMUSG00000030495.12 ENSMUSG00000030495 ENSMUST00000146959 Slc7a10 protein_coding Interval_80856 chr18 49502701 49502941 + 0 NA Intergenic Intergenic -20468 ENSMUSG00000100297.1 ENSMUSG00000100297 ENSMUST00000190201 1700044K03Rik lincRNA Interval_89928 chr2 26556352 26557320 + 0 NA Intergenic Intergenic -1789 ENSMUSG00000082864.1 ENSMUSG00000082864 ENSMUST00000121427 Gm13358 processed_pseudogene Interval_162094 chr8 125048995 125050046 + 0 NA Intergenic Intergenic -14495 ENSMUSG00000080516.1 ENSMUSG00000080516 ENSMUST00000116866 Gm22197 miRNA Interval_172562 chrX 36795258 36796904 + 0 NA intron (ENSMUSG00000016319.3, intron 1 of 1) protein_coding-intron (ENSMUSG00000016319.3, intron 1 of 3) -1198 ENSMUSG00000016319.3 ENSMUSG00000016319 ENSMUST00000156672 Slc25a5 protein_coding Interval_132810 chr5 148004495 148006478 + 0 NA intron (ENSMUSG00000029651.16, intron 1 of 14) protein_coding-intron (ENSMUSG00000029651.16, intron 1 of 14) -48320 ENSMUSG00000085565.1 ENSMUSG00000085565 ENSMUST00000138406 Gm15721 lincRNA Interval_80372 chr18 40232934 40234113 + 0 NA Intergenic Intergenic -14180 ENSMUSG00000024487.5 ENSMUSG00000024487 ENSMUST00000237176 Yipf5 protein_coding Interval_102715 chr3 30549578 30550461 + 0 NA Intergenic Intergenic 12110 ENSMUSG00000104243.1 ENSMUSG00000104243 ENSMUST00000195484 Gm38153 processed_pseudogene Interval_106993 chr3 102677334 102677633 + 0 NA Intergenic Intergenic 9234 ENSMUSG00000104685.1 ENSMUSG00000104685 ENSMUST00000198096 Gm19202 processed_pseudogene Interval_144409 chr7 24983289 24984546 + 0 NA intron (ENSMUSG00000040907.15, intron 16 of 22) protein_coding-intron (ENSMUSG00000040907.15, intron 16 of 22) 3750 ENSMUSG00000099258.1 ENSMUSG00000099258 ENSMUST00000184595 Mir7047 miRNA Interval_36359 chr12 41929335 41929537 + 0 NA intron (ENSMUSG00000113370.1, intron 5 of 6) protein_coding-intron (ENSMUSG00000056899.10, intron 6 of 6) 87320 ENSMUSG00000113370.1 ENSMUSG00000113370 ENSMUST00000222917 Gm46348 lincRNA Interval_165636 chr9 50577431 50577661 + 0 NA exon (ENSMUSG00000039217.13, exon 2 of 5) protein_coding-exon (ENSMUSG00000039217.13, exon 2 of 5) 12172 ENSMUSG00000039217.13 ENSMUSG00000039217 ENSMUST00000059081 Il18 protein_coding Interval_88629 chr2 7821384 7821676 + 0 NA Intergenic Intergenic -40122 ENSMUSG00000085070.1 ENSMUSG00000085070 ENSMUST00000141649 Gm13211 lincRNA Interval_164811 chr9 42108226 42109824 + 0 NA intron (ENSMUSG00000049313.8, intron 1 of 47) protein_coding-intron (ENSMUSG00000049313.8, intron 1 of 47) -33336 ENSMUSG00000111167.1 ENSMUSG00000111167 ENSMUST00000217090 Gm39321 lincRNA Interval_107195 chr3 104505824 104506854 + 0 NA intron (ENSMUSG00000032913.13, intron 1 of 17) protein_coding-intron (ENSMUSG00000032913.13, intron 1 of 17) -4732 ENSMUSG00000104973.1 ENSMUSG00000104973 ENSMUST00000199690 A530041M06Rik sense_intronic Interval_108704 chr3 130504230 130504467 + 0 NA intron (ENSMUSG00000058897.18, intron 12 of 37) protein_coding-intron (ENSMUSG00000058897.18, intron 12 of 37) -35141 ENSMUSG00000105011.1 ENSMUSG00000105011 ENSMUST00000196743 Gm43210 TEC Interval_20576 chr10 119149135 119149824 + 0 NA intron (ENSMUSG00000112161.1, intron 1 of 5) lincRNA-intron (ENSMUSG00000112161.1, intron 1 of 5) 16906 ENSMUSG00000112161.1 ENSMUSG00000112161 ENSMUST00000217700 Gm34045 lincRNA Interval_145154 chr7 30331774 30332491 + 0 NA Intergenic Intergenic -2666 ENSMUSG00000118440.1 ENSMUSG00000118440 ENSMUST00000238389 Gm50483 processed_pseudogene Interval_152066 chr7 128739514 128740870 + 0 NA exon (ENSMUSG00000048170.14, exon 1 of 16) protein_coding-exon (ENSMUSG00000048170.14, exon 1 of 16) 5084 ENSMUSG00000108720.1 ENSMUSG00000108720 ENSMUST00000206944 Gm44672 antisense Interval_163269 chr9 20442838 20443670 + 0 NA exon (ENSMUSG00000063108.15, exon 4 of 4) protein_coding-exon (ENSMUSG00000063108.15, exon 4 of 4) 13917 ENSMUSG00000111626.1 ENSMUSG00000111626 ENSMUST00000215252 Gm48738 processed_pseudogene Interval_4408 chr1 73963002 73963346 + 0 NA promoter-TSS (ENSMUSG00000055322.16) protein_coding-promoter-TSS (ENSMUSG00000055322.16) -107599 ENSMUSG00000098504.1 ENSMUSG00000098504 ENSMUST00000183826 Mir6351 miRNA Interval_160163 chr8 106846641 106847001 + 0 NA intron (ENSMUSG00000041949.6, intron 17 of 17) protein_coding-intron (ENSMUSG00000041949.6, intron 17 of 17) -24015 ENSMUSG00000031910.14 ENSMUSG00000031910 ENSMUST00000175987 Has3 protein_coding Interval_106837 chr3 101229950 101230451 + 0 NA Intergenic Intergenic -3260 ENSMUSG00000083546.1 ENSMUSG00000083546 ENSMUST00000120257 Tpt1-ps1 processed_pseudogene Interval_41857 chr13 3582992 3583481 + 0 NA intron (ENSMUSG00000033799.10, intron 1 of 8) protein_coding-intron (ENSMUSG00000033799.10, intron 12 of 19) 20851 ENSMUSG00000113894.1 ENSMUSG00000113894 ENSMUST00000223046 Gm48838 TEC Interval_169561 chr9 99144551 99144787 + 0 NA Intergenic Intergenic -4744 ENSMUSG00000032462.14 ENSMUSG00000032462 ENSMUST00000124723 Pik3cb protein_coding Interval_156251 chr8 46557218 46557446 + 0 NA intron (ENSMUSG00000031629.14, intron 3 of 5) protein_coding-intron (ENSMUSG00000031629.14, intron 3 of 12) 5294 ENSMUSG00000031629.14 ENSMUSG00000031629 ENSMUST00000136724 Cenpu protein_coding Interval_55554 chr14 91806438 91807025 + 0 NA Intergenic Intergenic 130283 ENSMUSG00000115171.1 ENSMUSG00000115171 ENSMUST00000227750 Gm48943 unprocessed_pseudogene Interval_173768 chrX 103827952 103828554 + 0 NA Intergenic Intergenic 49560 ENSMUSG00000083605.1 ENSMUSG00000083605 ENSMUST00000117904 Gm14893 processed_pseudogene Interval_52107 chr14 36469001 36469267 + 0 NA Intergenic Intergenic -142983 ENSMUSG00000088766.1 ENSMUSG00000088766 ENSMUST00000158141 Gm24394 snoRNA Interval_115141 chr4 91374752 91375302 + 0 NA intron (ENSMUSG00000008489.18, intron 1 of 7) protein_coding-intron (ENSMUSG00000008489.18, intron 2 of 7) -1664 ENSMUSG00000098563.1 ENSMUSG00000098563 ENSMUST00000183406 Mir6402 miRNA Interval_16652 chr10 66843318 66844076 + 0 NA Intergenic Intergenic 6100 ENSMUSG00000112379.1 ENSMUSG00000112379 ENSMUST00000218961 Gm47900 lincRNA Interval_7401 chr1 131020485 131021895 + 0 NA intron (ENSMUSG00000016529.5, intron 2 of 4) protein_coding-intron (ENSMUSG00000016529.5, intron 2 of 4) 1345 ENSMUSG00000016529.5 ENSMUSG00000016529 ENSMUST00000016673 Il10 protein_coding Interval_147026 chr7 58657918 58659002 + 0 NA exon (ENSMUSG00000025324.8, exon 1 of 21) protein_coding-exon (ENSMUSG00000025324.8, exon 1 of 21) 2294 ENSMUSG00000025324.8 ENSMUSG00000025324 ENSMUST00000168747 Atp10a protein_coding Interval_118644 chr4 132958551 132959644 + 0 NA Intergenic Intergenic -18019 ENSMUSG00000028874.14 ENSMUSG00000028874 ENSMUST00000171223 Fgr protein_coding Interval_35084 chr12 17193121 17193724 + 0 NA Intergenic Intergenic -16534 ENSMUSG00000051726.6 ENSMUSG00000051726 ENSMUST00000170580 Kcnf1 protein_coding Interval_88246 chr19 61107248 61107521 + 0 NA intron (ENSMUSG00000074733.14, intron 3 of 6) protein_coding-intron (ENSMUSG00000074733.14, intron 3 of 6) 33433 ENSMUSG00000074733.14 ENSMUSG00000074733 ENSMUST00000148569 Zfp950 protein_coding Interval_66300 chr16 32969842 32970469 + 0 NA intron (ENSMUSG00000022801.13, intron 6 of 18) protein_coding-intron (ENSMUSG00000022801.13, intron 6 of 20) -31748 ENSMUSG00000070225.1 ENSMUSG00000070225 ENSMUST00000093713 n-R5s33 rRNA Interval_9234 chr1 155306675 155306920 + 0 NA intron (ENSMUSG00000026469.14, intron 10 of 13) protein_coding-intron (ENSMUSG00000026469.14, intron 11 of 14) -9169 ENSMUSG00000093286.1 ENSMUSG00000093286 ENSMUST00000175545 Gm22569 miRNA Interval_64744 chr16 14815000 14816111 + 0 NA Intergenic Intergenic -8286 ENSMUSG00000095165.1 ENSMUSG00000095165 ENSMUST00000178877 Gm25547 snRNA Interval_68580 chr16 79177053 79177411 + 0 NA Intergenic Intergenic -86135 ENSMUSG00000022857.13 ENSMUSG00000022857 ENSMUST00000060402 Tmprss15 protein_coding Interval_26482 chr11 58092673 58093236 + 0 NA intron (ENSMUSG00000086962.4, intron 1 of 8) protein_coding-intron (ENSMUSG00000086962.4, intron 1 of 8) 180 ENSMUSG00000086962.4 ENSMUSG00000086962 ENSMUST00000137124 Gm12248 protein_coding Interval_7476 chr1 131709537 131710126 + 0 NA intron (ENSMUSG00000052688.12, intron 5 of 5) protein_coding-intron (ENSMUSG00000052688.12, intron 4 of 4) 21093 ENSMUSG00000052688.12 ENSMUSG00000052688 ENSMUST00000130848 Rab7b protein_coding Interval_171185 chr9 115038517 115039793 + 0 NA intron (ENSMUSG00000040875.12, intron 1 of 11) protein_coding-intron (ENSMUSG00000040875.12, intron 1 of 11) 40539 ENSMUSG00000040875.12 ENSMUSG00000040875 ENSMUST00000182413 Osbpl10 protein_coding Interval_134779 chr6 31478307 31480627 + 0 NA exon (ENSMUSG00000025609.15, exon 1 of 1) protein_coding-exon (ENSMUSG00000025609.15, exon 1 of 1) 44844 ENSMUSG00000025608.9 ENSMUSG00000025608 ENSMUST00000136877 Podxl protein_coding Interval_50575 chr14 15851518 15852333 + 0 NA intron (ENSMUSG00000114794.1, intron 1 of 3) lincRNA-intron (ENSMUSG00000114794.1, intron 1 of 3) -24703 ENSMUSG00000114513.1 ENSMUSG00000114513 ENSMUST00000225441 Gm47780 lincRNA Interval_122571 chr5 23855620 23855848 + 0 NA TTS (ENSMUSG00000097180.5) lincRNA-TTS (ENSMUSG00000097180.5) 3524 ENSMUSG00000095205.1 ENSMUSG00000095205 ENSMUST00000175580 Snord93 snoRNA Interval_118649 chr4 132982913 132984925 + 0 NA intron (ENSMUSG00000028874.14, intron 1 of 12) protein_coding-intron (ENSMUSG00000028874.14, intron 1 of 12) 6803 ENSMUSG00000028874.14 ENSMUSG00000028874 ENSMUST00000171223 Fgr protein_coding Interval_67840 chr16 57627800 57628103 + 0 NA exon (ENSMUSG00000068196.5, exon 4 of 4) protein_coding-exon (ENSMUSG00000068196.5, exon 4 of 4) -21087 ENSMUSG00000022748.8 ENSMUSG00000022748 ENSMUST00000232413 Cmss1 protein_coding Interval_140950 chr6 122952187 122952370 + 0 NA promoter-TSS (ENSMUSG00000043832.13) protein_coding-promoter-TSS (ENSMUSG00000043832.13) -500 ENSMUSG00000043832.13 ENSMUSG00000043832 ENSMUST00000204427 Clec4a3 protein_coding Interval_96756 chr2 127780049 127780362 + 0 NA intron (ENSMUSG00000027378.16, intron 1 of 19) protein_coding-intron (ENSMUSG00000027378.16, intron 1 of 19) 12283 ENSMUSG00000051319.6 ENSMUSG00000051319 ENSMUST00000135091 Mtln protein_coding Interval_137117 chr6 67551844 67552863 + 0 NA intron (ENSMUSG00000105650.1, intron 4 of 4) lincRNA-intron (ENSMUSG00000105650.1, intron 4 of 4) -3144 ENSMUSG00000076501.2 ENSMUSG00000076501 ENSMUST00000103302 Igkv2-137 IG_V_gene Interval_6721 chr1 118982673 118984152 + 0 NA promoter-TSS (ENSMUSG00000048402.14) protein_coding-promoter-TSS (ENSMUSG00000048402.14) 29192 ENSMUSG00000098273.1 ENSMUSG00000098273 ENSMUST00000183982 Mir6346 miRNA Interval_101156 chr2 178602757 178604058 + 0 NA Intergenic Intergenic 142777 ENSMUSG00000039155.15 ENSMUSG00000039155 ENSMUST00000176869 Cdh26 protein_coding Interval_9779 chr1 162120004 162121202 + 0 NA intron (ENSMUSG00000040265.16, intron 2 of 3) protein_coding-intron (ENSMUSG00000040265.16, intron 15 of 19) -32135 ENSMUSG00000102994.1 ENSMUSG00000102994 ENSMUST00000193239 Gm37767 TEC Interval_146968 chr7 56444847 56445265 + 0 NA intron (ENSMUSG00000030450.11, intron 22 of 22) protein_coding-intron (ENSMUSG00000030450.11, intron 23 of 23) -201906 ENSMUSG00000108773.1 ENSMUSG00000108773 ENSMUST00000206278 Gm44506 antisense Interval_92702 chr2 63183651 63185737 + 0 NA promoter-TSS (ENSMUSG00000059742.10) protein_coding-promoter-TSS (ENSMUSG00000059742.10) -432 ENSMUSG00000059742.10 ENSMUSG00000059742 ENSMUST00000131799 Kcnh7 protein_coding Interval_31296 chr11 99421867 99422530 + 0 NA promoter-TSS (ENSMUSG00000020912.4) protein_coding-promoter-TSS (ENSMUSG00000020912.4) 61 ENSMUSG00000020912.4 ENSMUSG00000020912 ENSMUST00000017741 Krt12 protein_coding Interval_158235 chr8 80315087 80315371 + 0 NA Intergenic Intergenic 120030 ENSMUSG00000110294.1 ENSMUSG00000110294 ENSMUST00000211276 Gm45430 lincRNA Interval_164806 chr9 42031370 42031659 + 0 NA exon (ENSMUSG00000086360.1, exon 3 of 4) antisense-exon (ENSMUSG00000086360.1, exon 3 of 4) 8899 ENSMUSG00000086360.1 ENSMUSG00000086360 ENSMUST00000143710 Gm16214 antisense Interval_117928 chr4 127137834 127139836 + 0 NA Intergenic Intergenic 2653 ENSMUSG00000082220.3 ENSMUSG00000082220 ENSMUST00000119616 Gm12943 processed_pseudogene Interval_105620 chr3 88167577 88167781 + 0 NA promoter-TSS (ENSMUSG00000001419.17) protein_coding-promoter-TSS (ENSMUSG00000001419.17) -573 ENSMUSG00000001419.17 ENSMUSG00000001419 ENSMUST00000152861 Mef2d protein_coding Interval_140838 chr6 122257622 122257822 + 0 NA Intergenic Intergenic 25160 ENSMUSG00000030114.8 ENSMUSG00000030114 ENSMUST00000032207 Klrg1 protein_coding Interval_56247 chr14 114948172 114948448 + 0 NA TTS (ENSMUSG00000114979.1) lincRNA-TTS (ENSMUSG00000114979.1) 2311 ENSMUSG00000114979.1 ENSMUSG00000114979 ENSMUST00000227718 Gm31072 lincRNA Interval_29531 chr11 84722182 84722629 + 0 NA Intergenic Intergenic -1973 ENSMUSG00000085044.1 ENSMUSG00000085044 ENSMUST00000150735 1700109G15Rik lincRNA Interval_101720 chr3 9137131 9137838 + 0 NA Intergenic Intergenic 64717 ENSMUSG00000103011.1 ENSMUSG00000103011 ENSMUST00000193160 Gm8860 processed_pseudogene Interval_154689 chr8 22619973 22620791 + 0 NA Intergenic Intergenic -3661 ENSMUSG00000031535.7 ENSMUSG00000031535 ENSMUST00000033936 Dkk4 protein_coding Interval_9008 chr1 153057044 153057633 + 0 NA intron (ENSMUSG00000042751.14, intron 1 of 1) protein_coding-intron (ENSMUSG00000042751.14, intron 1 of 10) 32169 ENSMUSG00000099969.1 ENSMUSG00000099969 ENSMUST00000190117 Gm28960 antisense Interval_78016 chr18 6742334 6742564 + 0 NA intron (ENSMUSG00000073639.6, intron 1 of 4) protein_coding-intron (ENSMUSG00000073639.6, intron 1 of 4) 18510 ENSMUSG00000117359.1 ENSMUSG00000117359 ENSMUST00000234092 Gm7466 processed_pseudogene Interval_80497 chr18 42787855 42788318 + 0 NA intron (ENSMUSG00000024500.20, intron 1 of 1) protein_coding-intron (ENSMUSG00000024500.20, intron 1 of 8) -147384 ENSMUSG00000084959.1 ENSMUSG00000084959 ENSMUST00000151215 4933407I08Rik antisense Interval_168262 chr9 78299320 78299625 + 0 NA intron (ENSMUSG00000074179.11, intron 2 of 4) protein_coding-intron (ENSMUSG00000074179.11, intron 5 of 7) 1454 ENSMUSG00000074179.11 ENSMUSG00000074179 ENSMUST00000126625 Gm10639 protein_coding Interval_94218 chr2 85252351 85252819 + 0 NA Intergenic Intergenic 15648 ENSMUSG00000081014.1 ENSMUSG00000081014 ENSMUST00000117313 Gm13714 processed_pseudogene Interval_120594 chr4 149571782 149572771 + 0 NA Intergenic Intergenic -4486 ENSMUSG00000086949.1 ENSMUSG00000086949 ENSMUST00000145263 Gm13066 antisense Interval_89336 chr2 19444834 19446764 + 0 NA exon (ENSMUSG00000026735.2, exon 1 of 2) protein_coding-exon (ENSMUSG00000026735.2, exon 1 of 2) 136 ENSMUSG00000026735.2 ENSMUSG00000026735 ENSMUST00000028068 Ptf1a protein_coding Interval_7900 chr1 134470456 134470641 + 0 NA exon (ENSMUSG00000026455.14, exon 1 of 1) protein_coding-exon (ENSMUSG00000026455.14, exon 1 of 1) 1669 ENSMUSG00000026455.14 ENSMUSG00000026455 ENSMUST00000141458 Klhl12 protein_coding Interval_158345 chr8 82191066 82191377 + 0 NA intron (ENSMUSG00000110045.1, intron 6 of 11) lincRNA-intron (ENSMUSG00000110045.1, intron 4 of 5) 16165 ENSMUSG00000110045.1 ENSMUSG00000110045 ENSMUST00000209515 Gm38590 lincRNA Interval_145102 chr7 30030720 30032059 + 0 NA Intergenic Intergenic 19991 ENSMUSG00000053985.10 ENSMUSG00000053985 ENSMUST00000077787 Zfp14 protein_coding Interval_117807 chr4 126329158 126329479 + 0 NA Intergenic Intergenic -3688 ENSMUSG00000028845.15 ENSMUSG00000028845 ENSMUST00000141990 Tekt2 protein_coding Interval_88941 chr2 13270860 13271911 + 0 NA promoter-TSS (ENSMUSG00000026727.10) protein_coding-promoter-TSS (ENSMUSG00000026727.10) -89 ENSMUSG00000026727.10 ENSMUSG00000026727 ENSMUST00000195538 Rsu1 protein_coding Interval_52111 chr14 36583856 36584415 + 0 NA Intergenic Intergenic -27982 ENSMUSG00000088766.1 ENSMUSG00000088766 ENSMUST00000158141 Gm24394 snoRNA Interval_162310 chr8 126970492 126971589 + 0 NA promoter-TSS (ENSMUSG00000033931.9) protein_coding-promoter-TSS (ENSMUSG00000033931.9) 30 ENSMUSG00000033931.9 ENSMUSG00000033931 ENSMUST00000212583 Rbm34 protein_coding Interval_97551 chr2 139753430 139754117 + 0 NA intron (ENSMUSG00000074766.10, intron 5 of 5) protein_coding-intron (ENSMUSG00000074766.10, intron 5 of 5) 75595 ENSMUSG00000074766.10 ENSMUSG00000074766 ENSMUST00000099307 Ism1 protein_coding Interval_75022 chr17 61121620 61121815 + 0 NA Intergenic Intergenic 105099 ENSMUSG00000117320.1 ENSMUSG00000117320 ENSMUST00000232876 Gm18070 processed_pseudogene Interval_171247 chr9 115600949 115601225 + 0 NA Intergenic Intergenic 25631 ENSMUSG00000094630.1 ENSMUSG00000094630 ENSMUST00000082810 n-R5s92 rRNA Interval_28958 chr11 79575455 79575699 + 0 NA intron (ENSMUSG00000020716.16, intron 17 of 17) protein_coding-intron (ENSMUSG00000020716.16, intron 57 of 57) -19588 ENSMUSG00000064486.1 ENSMUSG00000064486 ENSMUST00000082552 Gm23293 snRNA Interval_108695 chr3 130326586 130326775 + 0 NA intron (ENSMUSG00000058897.18, intron 2 of 37) protein_coding-intron (ENSMUSG00000058897.18, intron 2 of 37) 121215 ENSMUSG00000065788.1 ENSMUSG00000065788 ENSMUST00000083854 Gm22682 snRNA Interval_94913 chr2 101691878 101692083 + 0 NA intron (ENSMUSG00000027164.8, intron 6 of 7) protein_coding-intron (ENSMUSG00000027164.8, intron 6 of 7) 7765 ENSMUSG00000027164.8 ENSMUSG00000027164 ENSMUST00000144063 Traf6 protein_coding Interval_7914 chr1 134555233 134557267 + 0 NA Intergenic Intergenic -9300 ENSMUSG00000046367.10 ENSMUSG00000046367 ENSMUST00000185836 Mgat4e protein_coding Interval_30245 chr11 91673693 91673943 + 0 NA Intergenic Intergenic -96260 ENSMUSG00000046755.5 ENSMUSG00000046755 ENSMUST00000061019 Kif2b protein_coding Interval_162246 chr8 126422067 126423366 + 0 NA exon (ENSMUSG00000051671.7, exon 1 of 2) protein_coding-exon (ENSMUSG00000051671.7, exon 1 of 2) 188 ENSMUSG00000051671.7 ENSMUSG00000051671 ENSMUST00000211868 Coa6 protein_coding Interval_46602 chr13 67499545 67500925 + 0 NA intron (ENSMUSG00000071291.10, intron 1 of 4) protein_coding-intron (ENSMUSG00000071291.10, intron 1 of 3) 268 ENSMUSG00000071291.10 ENSMUSG00000071291 ENSMUST00000163534 Zfp58 protein_coding Interval_149096 chr7 93155459 93156544 + 0 NA Intergenic Intergenic -8030 ENSMUSG00000088877.1 ENSMUSG00000088877 ENSMUST00000158252 Gm25860 snoRNA Interval_50494 chr14 14059527 14060032 + 0 NA intron (ENSMUSG00000021738.5, intron 5 of 12) protein_coding-intron (ENSMUSG00000021738.5, intron 4 of 11) 46635 ENSMUSG00000021738.5 ENSMUSG00000021738 ENSMUST00000224315 Atxn7 protein_coding Interval_139906 chr6 112605362 112606187 + 0 NA exon (ENSMUSG00000029633.9, exon 1 of 1) processed_pseudogene-exon (ENSMUSG00000029633.9, exon 1 of 1) 230 ENSMUSG00000029633.9 ENSMUSG00000029633 ENSMUST00000121490 Gm5578 processed_pseudogene Interval_127045 chr5 99921868 99922672 + 0 NA intron (ENSMUSG00000105078.2, intron 3 of 5) protein_coding-intron (ENSMUSG00000105078.2, intron 2 of 5) 6111 ENSMUSG00000089062.1 ENSMUSG00000089062 ENSMUST00000158437 Gm22838 snRNA Interval_172436 chrX 20059124 20061303 + 0 NA exon (ENSMUSG00000037347.7, exon 1 of 2) protein_coding-exon (ENSMUSG00000037347.7, exon 1 of 2) 653 ENSMUSG00000037347.7 ENSMUSG00000037347 ENSMUST00000044138 Chst7 protein_coding Interval_15812 chr10 57479061 57479617 + 0 NA intron (ENSMUSG00000097370.2, intron 3 of 3) lincRNA-intron (ENSMUSG00000097370.2, intron 3 of 3) 7012 ENSMUSG00000097370.2 ENSMUSG00000097370 ENSMUST00000180831 4930467K11Rik lincRNA Interval_33332 chr11 115974539 115975575 + 0 NA promoter-TSS (ENSMUSG00000020758.15) protein_coding-promoter-TSS (ENSMUSG00000020758.15) 332 ENSMUSG00000020758.15 ENSMUSG00000020758 ENSMUST00000130286 Itgb4 protein_coding Interval_142603 chr6 144129861 144130085 + 0 NA intron (ENSMUSG00000041540.16, intron 5 of 6) protein_coding-intron (ENSMUSG00000041540.16, intron 2 of 14) 79595 ENSMUSG00000041540.16 ENSMUSG00000041540 ENSMUST00000150087 Sox5 protein_coding Interval_107679 chr3 110258457 110258814 + 0 NA Intergenic Intergenic -7642 ENSMUSG00000049300.11 ENSMUSG00000049300 ENSMUST00000106567 Prmt6 protein_coding Interval_36310 chr12 41023697 41024797 + 0 NA promoter-TSS (ENSMUSG00000056899.10) protein_coding-promoter-TSS (ENSMUSG00000056899.10) 121 ENSMUSG00000056899.10 ENSMUSG00000056899 ENSMUST00000080160 Immp2l protein_coding Interval_33052 chr11 113892628 113893533 + 0 NA intron (ENSMUSG00000041592.16, intron 4 of 11) protein_coding-intron (ENSMUSG00000041592.16, intron 4 of 44) -82657 ENSMUSG00000041592.16 ENSMUSG00000041592 ENSMUST00000144301 Sdk2 protein_coding Interval_20448 chr10 117676934 117677174 + 0 NA intron (ENSMUSG00000020183.11, intron 1 of 2) protein_coding-intron (ENSMUSG00000020183.11, intron 7 of 8) 1161 ENSMUSG00000020183.11 ENSMUSG00000020183 ENSMUST00000141991 Cpm protein_coding Interval_82085 chr18 67654749 67655169 + 0 NA TTS (ENSMUSG00000024537.5) protein_coding-TTS (ENSMUSG00000024537.5) 13351 ENSMUSG00000024537.5 ENSMUSG00000024537 ENSMUST00000236522 Psmg2 protein_coding Interval_32455 chr11 107651429 107652322 + 0 NA intron (ENSMUSG00000020721.16, intron 7 of 13) protein_coding-intron (ENSMUSG00000020721.16, intron 22 of 31) 14153 ENSMUSG00000098497.1 ENSMUSG00000098497 ENSMUST00000185044 Mir6932 miRNA Interval_12435 chr1 193418615 193419304 + 0 NA Intergenic Intergenic -48734 ENSMUSG00000016179.11 ENSMUSG00000016179 ENSMUST00000165718 Camk1g protein_coding Interval_69214 chr16 91405797 91406997 + 0 NA promoter-TSS (ENSMUSG00000022969.13) protein_coding-promoter-TSS (ENSMUSG00000022969.13) 233 ENSMUSG00000022969.13 ENSMUSG00000022969 ENSMUST00000137612 Il10rb protein_coding Interval_77091 chr17 86460609 86461425 + 0 NA intron (ENSMUSG00000045038.14, intron 2 of 14) protein_coding-intron (ENSMUSG00000045038.14, intron 3 of 15) -29545 ENSMUSG00000045038.14 ENSMUSG00000045038 ENSMUST00000136986 Prkce protein_coding Interval_92773 chr2 65340193 65341428 + 0 NA intron (ENSMUSG00000061171.15, intron 7 of 11) protein_coding-intron (ENSMUSG00000061171.15, intron 7 of 11) 23190 ENSMUSG00000061171.15 ENSMUSG00000061171 ENSMUST00000141690 Slc38a11 protein_coding Interval_32933 chr11 113208501 113209164 + 0 NA intron (ENSMUSG00000085421.1, intron 2 of 3) lincRNA-intron (ENSMUSG00000085421.1, intron 2 of 3) 837 ENSMUSG00000085421.1 ENSMUSG00000085421 ENSMUST00000130373 4732490B19Rik lincRNA Interval_106086 chr3 92815382 92816599 + 0 NA Intergenic Intergenic -8099 ENSMUSG00000095870.1 ENSMUSG00000095870 ENSMUST00000179917 Lce1k protein_coding Interval_5753 chr1 91483387 91484198 + 0 NA exon (ENSMUSG00000100151.1, exon 2 of 2) lincRNA-exon (ENSMUSG00000100151.1, exon 2 of 2) 768 ENSMUSG00000100151.1 ENSMUSG00000100151 ENSMUST00000187902 Gm28382 lincRNA Interval_16409 chr10 62773819 62774825 + 0 NA intron (ENSMUSG00000020074.7, intron 8 of 24) protein_coding-intron (ENSMUSG00000020074.7, intron 8 of 24) -8682 ENSMUSG00000080469.1 ENSMUSG00000080469 ENSMUST00000116819 Snord98 snoRNA Interval_108472 chr3 127489260 127489887 + 0 NA intron (ENSMUSG00000032826.19, intron 1 of 1) protein_coding-intron (ENSMUSG00000032826.19, intron 1 of 1) -8146 ENSMUSG00000106369.1 ENSMUSG00000106369 ENSMUST00000196541 Gm43355 transcribed_unprocessed_pseudogene Interval_120099 chr4 141811194 141811797 + 0 NA intron (ENSMUSG00000028914.13, intron 6 of 7) protein_coding-intron (ENSMUSG00000028914.13, intron 6 of 8) 14506 ENSMUSG00000058579.5 ENSMUSG00000058579 ENSMUST00000155826 Cela2a protein_coding Interval_1124 chr1 15858577 15859108 + 0 NA intron (ENSMUSG00000032719.4, intron 4 of 4) protein_coding-intron (ENSMUSG00000032719.4, intron 4 of 4) 5511 ENSMUSG00000104379.1 ENSMUSG00000104379 ENSMUST00000194867 Gm37509 TEC Interval_160334 chr8 108510598 108511308 + 0 NA intron (ENSMUSG00000038872.10, intron 3 of 15) protein_coding-intron (ENSMUSG00000038872.10, intron 3 of 15) 26268 ENSMUSG00000109868.1 ENSMUSG00000109868 ENSMUST00000211262 Gm39244 lincRNA Interval_170286 chr9 106697153 106697453 + 0 NA intron (ENSMUSG00000040661.6, intron 20 of 21) protein_coding-intron (ENSMUSG00000040661.6, intron 20 of 21) -12001 ENSMUSG00000040813.16 ENSMUSG00000040813 ENSMUST00000185645 Tex264 protein_coding Interval_137811 chr6 82702578 82704667 + 0 NA intron (ENSMUSG00000030042.15, intron 1 of 3) protein_coding-intron (ENSMUSG00000030042.15, intron 1 of 3) 1743 ENSMUSG00000030042.15 ENSMUSG00000030042 ENSMUST00000140281 Pole4 protein_coding Interval_81395 chr18 60483952 60484273 + 0 NA intron (ENSMUSG00000038059.7, intron 1 of 1) protein_coding-intron (ENSMUSG00000038059.7, intron 1 of 1) 17464 ENSMUSG00000038059.7 ENSMUSG00000038059 ENSMUST00000237270 Smim3 protein_coding Interval_75590 chr17 69075467 69077141 + 0 NA intron (ENSMUSG00000024044.19, intron 1 of 3) protein_coding-intron (ENSMUSG00000024044.19, intron 1 of 3) -50696 ENSMUSG00000024044.19 ENSMUSG00000024044 ENSMUST00000223565 Epb41l3 protein_coding Interval_129658 chr5 121575176 121576893 + 0 NA promoter-TSS (ENSMUSG00000029455.14) protein_coding-promoter-TSS (ENSMUSG00000029455.14) -3196 ENSMUSG00000029455.14 ENSMUSG00000029455 ENSMUST00000152945 Aldh2 protein_coding Interval_82230 chr18 69436133 69437489 + 0 NA intron (ENSMUSG00000053477.17, intron 1 of 17) protein_coding-intron (ENSMUSG00000053477.17, intron 4 of 20) -85639 ENSMUSG00000053477.17 ENSMUSG00000053477 ENSMUST00000136019 Tcf4 protein_coding Interval_104850 chr3 75902128 75902438 + 0 NA exon (ENSMUSG00000034109.15, exon 6 of 6) protein_coding-exon (ENSMUSG00000034109.15, exon 6 of 6) -49841 ENSMUSG00000103024.1 ENSMUSG00000103024 ENSMUST00000193507 Gm37685 TEC Interval_131673 chr5 139199944 139201246 + 0 NA promoter-TSS (ENSMUSG00000036817.14) protein_coding-promoter-TSS (ENSMUSG00000036817.14) 15761 ENSMUSG00000106127.1 ENSMUSG00000106127 ENSMUST00000196947 4930520M14Rik antisense Interval_80515 chr18 43206982 43208173 + 0 NA promoter-TSS (ENSMUSG00000039954.9) protein_coding-promoter-TSS (ENSMUSG00000039954.9) -100 ENSMUSG00000039954.9 ENSMUSG00000039954 ENSMUST00000235682 Stk32a protein_coding Interval_73668 chr17 42602956 42604072 + 0 NA intron (ENSMUSG00000043972.8, intron 2 of 6) protein_coding-intron (ENSMUSG00000043972.8, intron 2 of 6) 7881 ENSMUSG00000043972.8 ENSMUSG00000043972 ENSMUST00000068355 Opn5 protein_coding Interval_127077 chr5 100120217 100121331 + 0 NA intron (ENSMUSG00000050640.16, intron 1 of 5) protein_coding-intron (ENSMUSG00000050640.16, intron 1 of 7) 28877 ENSMUSG00000086259.7 ENSMUSG00000086259 ENSMUST00000154539 Tmem150cos antisense Interval_171410 chr9 117833252 117833964 + 0 NA intron (ENSMUSG00000039607.17, intron 1 of 3) protein_coding-intron (ENSMUSG00000039607.17, intron 1 of 3) 39073 ENSMUSG00000039607.17 ENSMUSG00000039607 ENSMUST00000210659 Rbms3 protein_coding Interval_44756 chr13 48273003 48274433 + 0 NA intron (ENSMUSG00000097326.2, intron 1 of 2) lincRNA-intron (ENSMUSG00000097326.2, intron 1 of 2) 166 ENSMUSG00000097326.2 ENSMUSG00000097326 ENSMUST00000180777 A330048O09Rik lincRNA Interval_19897 chr10 111009399 111010854 + 0 NA promoter-TSS (ENSMUSG00000035798.14) protein_coding-promoter-TSS (ENSMUSG00000035798.14) -131 ENSMUSG00000035798.14 ENSMUSG00000035798 ENSMUST00000218981 Zdhhc17 protein_coding Interval_156365 chr8 47733052 47733712 + 0 NA Intergenic Intergenic 14136 ENSMUSG00000064508.1 ENSMUSG00000064508 ENSMUST00000082574 n-R5s96 rRNA Interval_2290 chr1 37702362 37702849 + 0 NA intron (ENSMUSG00000026090.16, intron 1 of 3) protein_coding-intron (ENSMUSG00000026090.16, intron 1 of 3) -5941 ENSMUSG00000102650.1 ENSMUSG00000102650 ENSMUST00000192480 Gm19863 TEC Interval_9622 chr1 160363251 160363954 + 0 NA intron (ENSMUSG00000026721.16, intron 2 of 6) protein_coding-intron (ENSMUSG00000026721.16, intron 18 of 20) -36524 ENSMUSG00000103693.1 ENSMUSG00000103693 ENSMUST00000195618 Gm37529 sense_intronic Interval_21376 chr10 128250698 128251183 + 0 NA TTS (ENSMUSG00000039994.15) protein_coding-TTS (ENSMUSG00000039994.15) -3210 ENSMUSG00000051716.6 ENSMUSG00000051716 ENSMUST00000218722 Apon protein_coding Interval_26607 chr11 59182769 59184256 + 0 NA promoter-TSS (ENSMUSG00000043448.13) protein_coding-promoter-TSS (ENSMUSG00000043448.13) -686 ENSMUSG00000043448.13 ENSMUSG00000043448 ENSMUST00000108790 Gjc2 protein_coding Interval_14480 chr10 34200788 34201343 + 0 NA intron (ENSMUSG00000039497.8, intron 1 of 2) protein_coding-intron (ENSMUSG00000039497.8, intron 1 of 5) 13013 ENSMUSG00000111876.1 ENSMUSG00000111876 ENSMUST00000216782 Gm18346 processed_pseudogene Interval_83910 chr19 5515968 5517400 + 0 NA intron (ENSMUSG00000109695.1, intron 1 of 3) transcribed_processed_pseudogene-intron (ENSMUSG00000109695.1, intron 1 of 3) -6202 ENSMUSG00000056185.5 ENSMUSG00000056185 ENSMUST00000238132 Snx32 protein_coding Interval_158818 chr8 86854836 86856642 + 0 NA intron (ENSMUSG00000031652.11, intron 2 of 6) protein_coding-intron (ENSMUSG00000031652.11, intron 2 of 6) -3319 ENSMUSG00000031652.11 ENSMUSG00000031652 ENSMUST00000210029 N4bp1 protein_coding Interval_132995 chr5 149164635 149164822 + 0 NA intron (ENSMUSG00000097191.2, intron 2 of 3) lincRNA-intron (ENSMUSG00000097191.2, intron 2 of 3) -8709 ENSMUSG00000024437.6 ENSMUSG00000024437 ENSMUST00000025307 Gm8615 transcribed_processed_pseudogene Interval_56847 chr14 122406018 122407565 + 0 NA promoter-TSS (ENSMUSG00000115263.1) antisense-promoter-TSS (ENSMUSG00000115263.1) -48 ENSMUSG00000115263.1 ENSMUSG00000115263 ENSMUST00000228409 Gm5089 antisense Interval_41604 chr12 116861894 116862571 + 0 NA intron (ENSMUSG00000056553.14, intron 6 of 22) protein_coding-intron (ENSMUSG00000056553.14, intron 6 of 22) -9130 ENSMUSG00000113795.1 ENSMUSG00000113795 ENSMUST00000220994 Gm48119 processed_pseudogene Interval_87824 chr19 56296357 56297686 + 0 NA intron (ENSMUSG00000025075.14, intron 1 of 9) protein_coding-intron (ENSMUSG00000025075.14, intron 2 of 13) 9025 ENSMUSG00000025075.14 ENSMUSG00000025075 ENSMUST00000165522 Habp2 protein_coding Interval_171630 chr9 119690840 119691389 + 0 NA intron (ENSMUSG00000034533.10, intron 2 of 26) protein_coding-intron (ENSMUSG00000034533.10, intron 3 of 27) -3075 ENSMUSG00000034533.10 ENSMUSG00000034533 ENSMUST00000213401 Scn10a protein_coding Interval_39721 chr12 95365628 95365995 + 0 NA Intergenic Intergenic 13140 ENSMUSG00000064972.1 ENSMUSG00000064972 ENSMUST00000083038 Gm26055 snRNA Interval_111655 chr4 25325607 25326943 + 0 NA Intergenic Intergenic 18445 ENSMUSG00000083737.1 ENSMUSG00000083737 ENSMUST00000121989 Prdx6-ps2 processed_pseudogene Interval_164816 chr9 42174369 42174970 + 0 NA Intergenic Intergenic 32308 ENSMUSG00000111167.1 ENSMUSG00000111167 ENSMUST00000217090 Gm39321 lincRNA Interval_174416 chrX 151922670 151923578 + 0 NA TTS (ENSMUSG00000025261.18) protein_coding-TTS (ENSMUSG00000025261.18) 9910 ENSMUSG00000065536.2 ENSMUSG00000065536 ENSMUST00000083602 Mir98 miRNA Interval_81193 chr18 56260123 56260739 + 0 NA Intergenic Intergenic -24421 ENSMUSG00000118137.1 ENSMUSG00000118137 ENSMUST00000236344 Gm50385 processed_pseudogene Interval_105121 chr3 81866203 81866589 + 0 NA Intergenic Intergenic -14331 ENSMUSG00000089444.1 ENSMUSG00000089444 ENSMUST00000158819 Gm22531 snoRNA Interval_64016 chr16 5334280 5335352 + 0 NA intron (ENSMUSG00000116029.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000116029.1, intron 1 of 2) -10659 ENSMUSG00000084573.1 ENSMUSG00000084573 ENSMUST00000122624 n-R5s30 rRNA Interval_43794 chr13 36522056 36522445 + 0 NA intron (ENSMUSG00000021420.13, intron 6 of 7) protein_coding-intron (ENSMUSG00000021420.13, intron 6 of 6) 36815 ENSMUSG00000114581.1 ENSMUSG00000114581 ENSMUST00000223824 Gm8277 processed_pseudogene Interval_161483 chr8 120666207 120668800 + 0 NA promoter-TSS (ENSMUSG00000031818.12) protein_coding-promoter-TSS (ENSMUSG00000031818.12) 576 ENSMUSG00000097919.1 ENSMUSG00000097919 ENSMUST00000181333 Gm27021 protein_coding Interval_123359 chr5 31709668 31709966 + 0 NA intron (ENSMUSG00000052139.18, intron 2 of 10) protein_coding-intron (ENSMUSG00000052139.18, intron 3 of 13) 1421 ENSMUSG00000107151.1 ENSMUSG00000107151 ENSMUST00000201018 Gm43810 TEC Interval_77203 chr17 87329930 87331159 + 0 NA TTS (ENSMUSG00000036918.16) protein_coding-TTS (ENSMUSG00000036918.16) 1508 ENSMUSG00000089701.1 ENSMUSG00000089701 ENSMUST00000161043 Gm15978 antisense Interval_97733 chr2 143620876 143621503 + 0 NA intron (ENSMUSG00000027419.9, intron 2 of 11) protein_coding-intron (ENSMUSG00000027419.9, intron 2 of 11) 74918 ENSMUSG00000027419.9 ENSMUSG00000027419 ENSMUST00000124751 Pcsk2 protein_coding Interval_122463 chr5 23122464 23123366 + 0 NA intron (ENSMUSG00000106379.1, intron 2 of 2) protein_coding-intron (ENSMUSG00000106379.1, intron 2 of 2) 100881 ENSMUSG00000104866.1 ENSMUSG00000104866 ENSMUST00000199085 Gm42948 antisense Interval_7874 chr1 134323251 134323544 + 0 NA intron (ENSMUSG00000026458.13, intron 10 of 27) protein_coding-intron (ENSMUSG00000026458.13, intron 10 of 28) -18589 ENSMUSG00000026458.13 ENSMUSG00000026458 ENSMUST00000186553 Ppfia4 protein_coding Interval_45126 chr13 52537738 52538003 + 0 NA Intergenic Intergenic -6591 ENSMUSG00000047842.7 ENSMUSG00000047842 ENSMUST00000057442 Diras2 protein_coding Interval_28983 chr11 79715733 79717533 + 0 NA Intergenic Intergenic 4664 ENSMUSG00000065395.1 ENSMUSG00000065395 ENSMUST00000083461 Mir193a miRNA Interval_14533 chr10 35057134 35058362 + 0 NA intron (ENSMUSG00000111042.1, intron 2 of 3) transcribed_processed_pseudogene-intron (ENSMUSG00000111042.1, intron 2 of 3) -54450 ENSMUSG00000077749.1 ENSMUSG00000077749 ENSMUST00000104561 Gm26341 snoRNA Interval_154503 chr8 18734261 18734538 + 0 NA intron (ENSMUSG00000031465.6, intron 1 of 8) protein_coding-intron (ENSMUSG00000031465.6, intron 1 of 8) -34852 ENSMUSG00000031465.6 ENSMUSG00000031465 ENSMUST00000170200 Angpt2 protein_coding Interval_14736 chr10 39501436 39504224 + 0 NA intron (ENSMUSG00000019843.14, intron 2 of 2) protein_coding-intron (ENSMUSG00000019843.14, intron 3 of 13) 55232 ENSMUSG00000087014.1 ENSMUSG00000087014 ENSMUST00000153722 Gm16364 antisense Interval_123876 chr5 36220250 36221226 + 0 NA intron (ENSMUSG00000029093.14, intron 3 of 4) protein_coding-intron (ENSMUSG00000029093.14, intron 2 of 26) 16717 ENSMUSG00000043430.5 ENSMUSG00000043430 ENSMUST00000052224 Psapl1 protein_coding Interval_126421 chr5 88391956 88392185 + 0 NA Intergenic Intergenic 15962 ENSMUSG00000029282.3 ENSMUSG00000029282 ENSMUST00000073363 Amtn protein_coding Interval_3264 chr1 55236821 55238017 + 0 NA exon (ENSMUSG00000046994.9, exon 1 of 1) protein_coding-exon (ENSMUSG00000046994.9, exon 1 of 1) 242 ENSMUSG00000046994.9 ENSMUSG00000046994 ENSMUST00000061334 Mars2 protein_coding Interval_108341 chr3 124504069 124504658 + 0 NA Intergenic Intergenic 2789 ENSMUSG00000077726.1 ENSMUSG00000077726 ENSMUST00000104538 Gm22900 snoRNA Interval_94 GL456221.1 115088 116887 + 0 NA NA NA NA NA Interval_80508 chr18 43059015 43061205 + 0 NA promoter-TSS (ENSMUSG00000024500.20) protein_coding-promoter-TSS (ENSMUSG00000024500.20) 10296 ENSMUSG00000094137.1 ENSMUSG00000094137 ENSMUST00000178200 Gm22264 snRNA Interval_147374 chr7 66256566 66256775 + 0 NA intron (ENSMUSG00000015133.17, intron 2 of 2) protein_coding-intron (ENSMUSG00000015133.17, intron 2 of 2) 5800 ENSMUSG00000015133.17 ENSMUSG00000015133 ENSMUST00000154893 Lrrk1 protein_coding Interval_95706 chr2 114540867 114541264 + 0 NA intron (ENSMUSG00000057147.13, intron 5 of 6) protein_coding-intron (ENSMUSG00000057147.13, intron 5 of 7) -113360 ENSMUSG00000084785.1 ENSMUSG00000084785 ENSMUST00000153726 Gm13972 processed_transcript Interval_108067 chr3 121320856 121321128 + 0 NA TTS (ENSMUSG00000039887.11) protein_coding-TTS (ENSMUSG00000039887.11) -16700 ENSMUSG00000084674.1 ENSMUSG00000084674 ENSMUST00000122725 Gm26027 misc_RNA Interval_65973 chr16 30634045 30634613 + 0 NA Intergenic Intergenic 34606 ENSMUSG00000046546.3 ENSMUSG00000046546 ENSMUST00000059078 Fam43a protein_coding Interval_116900 chr4 118083281 118083960 + 0 NA intron (ENSMUSG00000028538.12, intron 2 of 11) protein_coding-intron (ENSMUSG00000028538.12, intron 2 of 11) -51738 ENSMUSG00000028538.12 ENSMUSG00000028538 ENSMUST00000126336 St3gal3 protein_coding Interval_55654 chr14 98237775 98238526 + 0 NA Intergenic Intergenic 22675 ENSMUSG00000089425.1 ENSMUSG00000089425 ENSMUST00000158800 Gm26006 snoRNA Interval_110091 chr3 153234728 153235282 + 0 NA intron (ENSMUSG00000052544.9, intron 3 of 4) protein_coding-intron (ENSMUSG00000052544.9, intron 2 of 2) -52190 ENSMUSG00000105337.4 ENSMUSG00000105337 ENSMUST00000197695 1700094M23Rik lincRNA Interval_105367 chr3 85573676 85574664 + 0 NA promoter-TSS (ENSMUSG00000028085.12) protein_coding-promoter-TSS (ENSMUSG00000028085.12) 38 ENSMUSG00000028085.12 ENSMUSG00000028085 ENSMUST00000029726 Gatb protein_coding Interval_141137 chr6 125199099 125199471 + 0 NA Intergenic Intergenic 3493 ENSMUSG00000093157.1 ENSMUSG00000093157 ENSMUST00000175416 Mir3098 miRNA Interval_65617 chr16 24215968 24216636 + 0 NA promoter-TSS (ENSMUSG00000115869.1) sense_intronic-promoter-TSS (ENSMUSG00000115869.1) 207 ENSMUSG00000115869.1 ENSMUSG00000115869 ENSMUST00000230869 Gm31814 sense_intronic Interval_1313 chr1 20311170 20312139 + 0 NA intron (ENSMUSG00000043760.16, intron 49 of 66) protein_coding-intron (ENSMUSG00000043760.16, intron 49 of 66) -44798 ENSMUSG00000089914.2 ENSMUSG00000089914 ENSMUST00000161509 4930486I03Rik antisense Interval_113384 chr4 54030378 54030825 + 0 NA Intergenic Intergenic 26544 ENSMUSG00000089552.1 ENSMUSG00000089552 ENSMUST00000158927 Gm24177 snoRNA Interval_133776 chr6 12023443 12023911 + 0 NA intron (ENSMUSG00000029629.17, intron 16 of 17) protein_coding-intron (ENSMUSG00000029629.17, intron 16 of 17) -20702 ENSMUSG00000029629.17 ENSMUSG00000029629 ENSMUST00000214543 Phf14 protein_coding Interval_173880 chrX 106838286 106838511 + 0 NA exon (ENSMUSG00000047686.9, exon 2 of 2) protein_coding-exon (ENSMUSG00000047686.9, exon 2 of 2) 2246 ENSMUSG00000047686.9 ENSMUSG00000047686 ENSMUST00000062010 Rtl3 protein_coding Interval_3129 chr1 53784281 53785716 + 0 NA intron (ENSMUSG00000026094.14, intron 1 of 7) protein_coding-intron (ENSMUSG00000026094.14, intron 1 of 7) -6203 ENSMUSG00000102405.1 ENSMUSG00000102405 ENSMUST00000194911 Gm37863 TEC Interval_49575 chr13 113107035 113107981 + 0 NA promoter-TSS (ENSMUSG00000051002.7) processed_pseudogene-promoter-TSS (ENSMUSG00000051002.7) -565 ENSMUSG00000051002.7 ENSMUSG00000051002 ENSMUST00000053398 Gm9848 processed_pseudogene Interval_171350 chr9 116714353 116714770 + 0 NA intron (ENSMUSG00000039607.17, intron 9 of 15) protein_coding-intron (ENSMUSG00000039607.17, intron 7 of 12) -344597 ENSMUSG00000092184.1 ENSMUSG00000092184 ENSMUST00000172565 Gm18489 processed_pseudogene Interval_166263 chr9 57871100 57871616 + 0 NA Intergenic Intergenic -41276 ENSMUSG00000055720.10 ENSMUSG00000055720 ENSMUST00000215936 Ubl7 protein_coding Interval_25622 chr11 50251969 50253409 + 0 NA intron (ENSMUSG00000097887.2, intron 1 of 2) antisense-intron (ENSMUSG00000097887.2, intron 1 of 2) -14173 ENSMUSG00000020377.15 ENSMUSG00000020377 ENSMUST00000221081 Ltc4s protein_coding Interval_168095 chr9 76322157 76324128 + 0 NA exon (ENSMUSG00000032360.16, exon 1 of 1) protein_coding-exon (ENSMUSG00000032360.16, exon 1 of 1) 714 ENSMUSG00000032360.16 ENSMUSG00000032360 ENSMUST00000184200 Hcrtr2 protein_coding Interval_14868 chr10 40639023 40641462 + 0 NA exon (ENSMUSG00000063428.8, exon 5 of 5) protein_coding-exon (ENSMUSG00000063428.8, exon 5 of 5) 10165 ENSMUSG00000063428.8 ENSMUSG00000063428 ENSMUST00000214618 Ddo protein_coding Interval_94884 chr2 100115886 100116595 + 0 NA Intergenic Intergenic 57307 ENSMUSG00000082259.1 ENSMUSG00000082259 ENSMUST00000121353 Gm13808 processed_pseudogene Interval_19135 chr10 94961933 94962827 + 0 NA Intergenic Intergenic 13790 ENSMUSG00000089146.1 ENSMUSG00000089146 ENSMUST00000158521 Gm25266 misc_RNA Interval_148325 chr7 80521557 80521757 + 0 NA intron (ENSMUSG00000030528.12, intron 1 of 21) protein_coding-intron (ENSMUSG00000030528.12, intron 1 of 21) 13870 ENSMUSG00000091989.1 ENSMUSG00000091989 ENSMUST00000166096 Ndufab1-ps processed_pseudogene Interval_91588 chr2 44174595 44174809 + 0 NA intron (ENSMUSG00000049744.15, intron 10 of 14) protein_coding-intron (ENSMUSG00000049744.15, intron 10 of 13) -109378 ENSMUSG00000085089.1 ENSMUSG00000085089 ENSMUST00000139948 Arhgap15os antisense Interval_143322 chr7 5291493 5291726 + 0 NA Intergenic Intergenic -13269 ENSMUSG00000109155.1 ENSMUSG00000109155 ENSMUST00000207938 Gm18757 processed_pseudogene Interval_77856 chr18 4689399 4690182 + 0 NA Intergenic Intergenic -53286 ENSMUSG00000117585.1 ENSMUSG00000117585 ENSMUST00000234879 Gm5047 processed_pseudogene Interval_82624 chr18 75498793 75499081 + 0 NA intron (ENSMUSG00000052928.9, intron 9 of 11) protein_coding-intron (ENSMUSG00000052928.9, intron 9 of 11) -15708 ENSMUSG00000097712.1 ENSMUSG00000097712 ENSMUST00000181913 Gm10532 antisense Interval_142812 chr6 145969318 145969821 + 0 NA Intergenic Intergenic -12035 ENSMUSG00000085414.1 ENSMUSG00000085414 ENSMUST00000139089 Sspnos antisense Interval_155487 chr8 33874437 33875294 + 0 NA intron (ENSMUSG00000031586.17, intron 1 of 8) protein_coding-intron (ENSMUSG00000031586.17, intron 1 of 7) 10882 ENSMUSG00000098166.1 ENSMUSG00000098166 ENSMUST00000182843 Gm26978 sense_intronic Interval_50319 chr14 11825779 11826013 + 0 NA intron (ENSMUSG00000021745.14, intron 2 of 3) protein_coding-intron (ENSMUSG00000021745.14, intron 2 of 29) -41698 ENSMUSG00000114431.1 ENSMUSG00000114431 ENSMUST00000224051 Gm48601 TEC Interval_115284 chr4 95282119 95282678 + 0 NA Intergenic Intergenic 89085 ENSMUSG00000084918.1 ENSMUSG00000084918 ENSMUST00000126143 Gm12708 lincRNA Interval_154586 chr8 21255281 21256799 + 0 NA Intergenic Intergenic 6286 ENSMUSG00000074441.3 ENSMUSG00000074441 ENSMUST00000098895 Defa40 protein_coding Interval_1629 chr1 30454168 30454482 + 0 NA Intergenic Intergenic -120928 ENSMUSG00000098883.1 ENSMUSG00000098883 ENSMUST00000184585 Gm27430 miRNA Interval_93645 chr2 75563418 75564186 + 0 NA Intergenic Intergenic 69580 ENSMUSG00000082152.1 ENSMUSG00000082152 ENSMUST00000119695 Gm13655 processed_pseudogene Interval_84510 chr19 11984206 11985491 + 0 NA intron (ENSMUSG00000024687.11, intron 9 of 13) protein_coding-intron (ENSMUSG00000024687.11, intron 9 of 13) 18907 ENSMUSG00000024687.11 ENSMUSG00000024687 ENSMUST00000025590 Osbp protein_coding Interval_100447 chr2 169050228 169050624 + 0 NA Intergenic Intergenic -10694 ENSMUSG00000080415.1 ENSMUSG00000080415 ENSMUST00000116765 Gm26469 miRNA Interval_1266 chr1 18703433 18704020 + 0 NA Intergenic Intergenic -4702 ENSMUSG00000101306.1 ENSMUSG00000101306 ENSMUST00000189030 Gm5252 processed_pseudogene Interval_5957 chr1 93523608 93523868 + 0 NA intron (ENSMUSG00000034066.13, intron 1 of 12) protein_coding-intron (ENSMUSG00000034066.13, intron 1 of 26) -8077 ENSMUSG00000103854.1 ENSMUSG00000103854 ENSMUST00000194919 Gm37250 TEC Interval_166375 chr9 58739725 58740255 + 0 NA intron (ENSMUSG00000074269.10, intron 1 of 2) protein_coding-intron (ENSMUSG00000074269.10, intron 1 of 5) -43979 ENSMUSG00000093473.1 ENSMUSG00000093473 ENSMUST00000177528 Gm20620 processed_pseudogene Interval_118870 chr4 134180775 134182014 + 0 NA intron (ENSMUSG00000037443.13, intron 1 of 3) protein_coding-intron (ENSMUSG00000037443.13, intron 1 of 13) -13499 ENSMUSG00000098693.1 ENSMUSG00000098693 ENSMUST00000184419 Gm27619 snoRNA Interval_4774 chr1 78543158 78544253 + 0 NA Intergenic Intergenic 31893 ENSMUSG00000012187.13 ENSMUSG00000012187 ENSMUST00000125458 Mogat1 protein_coding Interval_99155 chr2 157553938 157554153 + 0 NA Intergenic Intergenic -6071 ENSMUSG00000067786.16 ENSMUSG00000067786 ENSMUST00000134513 Nnat protein_coding Interval_128213 chr5 111772984 111774101 + 0 NA Intergenic Intergenic -11839 ENSMUSG00000085271.7 ENSMUSG00000085271 ENSMUST00000129146 E130006D01Rik lincRNA Interval_111464 chr4 21832613 21833369 + 0 NA intron (ENSMUSG00000040455.17, intron 12 of 12) protein_coding-intron (ENSMUSG00000040455.17, intron 16 of 16) -15057 ENSMUSG00000028248.15 ENSMUSG00000028248 ENSMUST00000133241 Pnisr protein_coding Interval_50300 chr14 11724095 11724378 + 0 NA intron (ENSMUSG00000021745.14, intron 2 of 3) protein_coding-intron (ENSMUSG00000021745.14, intron 2 of 29) -43707 ENSMUSG00000114310.1 ENSMUSG00000114310 ENSMUST00000225152 Gm48602 TEC Interval_75082 chr17 63093180 63093444 + 0 NA intron (ENSMUSG00000023965.13, intron 4 of 5) protein_coding-intron (ENSMUSG00000023965.13, intron 7 of 8) 3688 ENSMUSG00000089586.1 ENSMUSG00000089586 ENSMUST00000158961 Gm25348 rRNA Interval_61283 chr15 80544240 80544676 + 0 NA intron (ENSMUSG00000050439.7, intron 2 of 6) protein_coding-intron (ENSMUSG00000050439.7, intron 1 of 5) 20698 ENSMUSG00000050439.7 ENSMUSG00000050439 ENSMUST00000229110 Enthd1 protein_coding Interval_43155 chr13 24747679 24748423 + 0 NA Intergenic Intergenic 6819 ENSMUSG00000085861.1 ENSMUSG00000085861 ENSMUST00000136906 Armh2 protein_coding Interval_57552 chr15 12296508 12296749 + 0 NA Intergenic Intergenic 9959 ENSMUSG00000115594.1 ENSMUSG00000115594 ENSMUST00000227442 Gm46497 processed_pseudogene Interval_95202 chr2 104746123 104746652 + 0 NA Intergenic Intergenic -23232 ENSMUSG00000027173.7 ENSMUSG00000027173 ENSMUST00000144133 Depdc7 protein_coding Interval_153550 chr8 3375453 3377268 + 0 NA intron (ENSMUSG00000004568.13, intron 2 of 28) protein_coding-intron (ENSMUSG00000004568.13, intron 2 of 10) 22923 ENSMUSG00000004568.13 ENSMUSG00000004568 ENSMUST00000145360 Arhgef18 protein_coding Interval_57780 chr15 19753404 19753673 + 0 NA Intergenic Intergenic -2866 ENSMUSG00000115233.1 ENSMUSG00000115233 ENSMUST00000226721 Gm46498 processed_pseudogene Interval_45298 chr13 54145994 54146401 + 0 NA Intergenic Intergenic 5262 ENSMUSG00000114042.1 ENSMUSG00000114042 ENSMUST00000220543 Gm18473 processed_pseudogene Interval_49858 chr13 117236904 117237295 + 0 NA intron (ENSMUSG00000021728.8, intron 3 of 3) protein_coding-intron (ENSMUSG00000021728.8, intron 2 of 8) -16027 ENSMUSG00000091423.2 ENSMUSG00000091423 ENSMUST00000238456 Gm17509 antisense Interval_137022 chr6 66505447 66505813 + 0 NA Intergenic Intergenic -10263 ENSMUSG00000107775.1 ENSMUSG00000107775 ENSMUST00000203630 Gm19764 processed_pseudogene Interval_117061 chr4 119291568 119292037 + 0 NA intron (ENSMUSG00000028639.14, intron 2 of 2) protein_coding-intron (ENSMUSG00000028639.14, intron 2 of 7) 2698 ENSMUSG00000028639.14 ENSMUSG00000028639 ENSMUST00000152733 Ybx1 protein_coding Interval_148809 chr7 88343737 88344310 + 0 NA promoter-TSS (ENSMUSG00000077693.1) snoRNA-promoter-TSS (ENSMUSG00000077693.1) 54 ENSMUSG00000077693.1 ENSMUSG00000077693 ENSMUST00000104505 Gm25345 snoRNA Interval_20187 chr10 115520160 115520691 + 0 NA TTS (ENSMUSG00000020140.15) protein_coding-TTS (ENSMUSG00000020140.15) -49561 ENSMUSG00000092210.1 ENSMUSG00000092210 ENSMUST00000173620 A930009A15Rik protein_coding Interval_50885 chr14 20464264 20464889 + 0 NA intron (ENSMUSG00000021814.17, intron 7 of 12) protein_coding-intron (ENSMUSG00000021814.17, intron 7 of 12) -5407 ENSMUSG00000021814.17 ENSMUSG00000021814 ENSMUST00000225132 Anxa7 protein_coding Interval_169266 chr9 95979948 95980878 + 0 NA intron (ENSMUSG00000032410.13, intron 13 of 23) protein_coding-intron (ENSMUSG00000032410.13, intron 13 of 41) 25551 ENSMUSG00000032410.13 ENSMUSG00000032410 ENSMUST00000187359 Xrn1 protein_coding Interval_102842 chr3 32060121 32060530 + 0 NA intron (ENSMUSG00000037610.15, intron 2 of 6) protein_coding-intron (ENSMUSG00000037610.15, intron 1 of 4) -95789 ENSMUSG00000037610.15 ENSMUSG00000037610 ENSMUST00000194796 Kcnmb2 protein_coding Interval_103127 chr3 35732086 35732365 + 0 NA Intergenic Intergenic -3148 ENSMUSG00000064834.1 ENSMUSG00000064834 ENSMUST00000082900 Gm25696 snRNA Interval_31876 chr11 103514664 103514864 + 0 NA Intergenic Intergenic -10167 ENSMUSG00000078632.4 ENSMUSG00000078632 ENSMUST00000153273 Lrrc37a protein_coding Interval_132675 chr5 147086662 147087650 + 0 NA intron (ENSMUSG00000029642.11, intron 1 of 3) protein_coding-intron (ENSMUSG00000029642.11, intron 1 of 2) 9592 ENSMUSG00000029642.11 ENSMUSG00000029642 ENSMUST00000196288 Polr1d protein_coding Interval_123280 chr5 31092656 31094022 + 0 NA exon (ENSMUSG00000029151.14, exon 1 of 8) protein_coding-exon (ENSMUSG00000029151.14, exon 1 of 8) -1645 ENSMUSG00000104299.1 ENSMUSG00000104299 ENSMUST00000191780 Gm9924 TEC Interval_40552 chr12 105694268 105694523 + 0 NA intron (ENSMUSG00000044715.7, intron 1 of 1) protein_coding-intron (ENSMUSG00000044715.7, intron 1 of 2) 8994 ENSMUSG00000044715.7 ENSMUSG00000044715 ENSMUST00000222841 Gskip protein_coding Interval_144060 chr7 19244547 19245166 + 0 NA exon (ENSMUSG00000052214.9, exon 2 of 2) protein_coding-exon (ENSMUSG00000052214.9, exon 2 of 2) 2726 ENSMUSG00000064580.1 ENSMUSG00000064580 ENSMUST00000082646 Gm25134 snRNA Interval_5543 chr1 89702359 89702643 + 0 NA intron (ENSMUSG00000055013.16, intron 9 of 16) protein_coding-intron (ENSMUSG00000055013.16, intron 9 of 17) 17699 ENSMUSG00000088775.1 ENSMUSG00000088775 ENSMUST00000158150 Gm26037 misc_RNA Interval_146459 chr7 46075404 46076140 + 0 NA intron (ENSMUSG00000030835.6, intron 25 of 30) protein_coding-intron (ENSMUSG00000030835.6, intron 25 of 30) 17189 ENSMUSG00000109882.1 ENSMUSG00000109882 ENSMUST00000210053 Gm18706 processed_pseudogene Interval_47537 chr13 87007244 87008462 + 0 NA Intergenic Intergenic 226741 ENSMUSG00000114856.1 ENSMUSG00000114856 ENSMUST00000224195 Gm47642 processed_pseudogene Interval_67118 chr16 43546136 43548170 + 0 NA intron (ENSMUSG00000022708.16, intron 3 of 5) protein_coding-intron (ENSMUSG00000022708.16, intron 3 of 8) 38996 ENSMUSG00000022708.16 ENSMUSG00000022708 ENSMUST00000114695 Zbtb20 protein_coding Interval_8202 chr1 136470580 136470838 + 0 NA intron (ENSMUSG00000041498.13, intron 1 of 27) protein_coding-intron (ENSMUSG00000041498.13, intron 2 of 29) 2774 ENSMUSG00000041498.13 ENSMUSG00000041498 ENSMUST00000195274 Kif14 protein_coding Interval_59654 chr15 57600691 57601233 + 0 NA Intergenic Intergenic -94767 ENSMUSG00000071757.10 ENSMUSG00000071757 ENSMUST00000160990 Zhx2 protein_coding Interval_172346 chrX 13280283 13282337 + 0 NA intron (ENSMUSG00000000787.12, intron 1 of 4) protein_coding-intron (ENSMUSG00000000787.12, intron 1 of 16) 288 ENSMUSG00000000787.12 ENSMUSG00000000787 ENSMUST00000149639 Ddx3x protein_coding Interval_45673 chr13 56758392 56758817 + 0 NA Intergenic Intergenic -4777 ENSMUSG00000110086.1 ENSMUSG00000110086 ENSMUST00000210744 Gm45623 protein_coding Interval_85728 chr19 30135035 30135741 + 0 NA intron (ENSMUSG00000024827.10, intron 11 of 18) protein_coding-intron (ENSMUSG00000024827.10, intron 11 of 24) 9843 ENSMUSG00000024827.10 ENSMUSG00000024827 ENSMUST00000235203 Gldc protein_coding Interval_137969 chr6 83831085 83832117 + 0 NA promoter-TSS (ENSMUSG00000045896.14) protein_coding-promoter-TSS (ENSMUSG00000045896.14) 99 ENSMUSG00000045896.14 ENSMUSG00000045896 ENSMUST00000205421 Paip2b protein_coding Interval_130707 chr5 129915424 129916958 + 0 NA Intergenic Intergenic 7651 ENSMUSG00000095789.6 ENSMUSG00000095789 ENSMUST00000192787 Nupr1l protein_coding Interval_163812 chr9 26759423 26760456 + 0 NA exon (ENSMUSG00000045994.17, exon 7 of 7) protein_coding-exon (ENSMUSG00000045994.17, exon 7 of 7) 26136 ENSMUSG00000045994.17 ENSMUSG00000045994 ENSMUST00000159527 B3gat1 protein_coding Interval_130304 chr5 125520887 125521679 + 0 NA Intergenic Intergenic 6040 ENSMUSG00000029482.4 ENSMUSG00000029482 ENSMUST00000200286 Aacs protein_coding Interval_95233 chr2 105062816 105063197 + 0 NA Intergenic Intergenic -29012 ENSMUSG00000079175.1 ENSMUSG00000079175 ENSMUST00000111107 Gm11060 protein_coding Interval_60391 chr15 73454333 73455115 + 0 NA Intergenic Intergenic -25814 ENSMUSG00000116174.1 ENSMUSG00000116174 ENSMUST00000229262 Gm10362 processed_pseudogene Interval_26503 chr11 58198313 58198512 + 0 NA Intergenic Intergenic -1176 ENSMUSG00000078853.8 ENSMUSG00000078853 ENSMUST00000168280 Igtp protein_coding Interval_83684 chr19 3706424 3708762 + 0 NA promoter-TSS (ENSMUSG00000035372.2) protein_coding-promoter-TSS (ENSMUSG00000035372.2) 583 ENSMUSG00000118249.1 ENSMUSG00000118249 ENSMUST00000236650 Gm36608 lincRNA Interval_122023 chr5 14092346 14092940 + 0 NA intron (ENSMUSG00000063531.7, intron 1 of 15) protein_coding-intron (ENSMUSG00000063531.7, intron 1 of 16) -18486 ENSMUSG00000085352.1 ENSMUSG00000085352 ENSMUST00000154338 Gm4128 antisense Interval_30587 chr11 95266376 95267241 + 0 NA intron (ENSMUSG00000020872.4, intron 2 of 3) protein_coding-intron (ENSMUSG00000020872.4, intron 2 of 3) 5279 ENSMUSG00000020872.4 ENSMUSG00000020872 ENSMUST00000021242 Tac4 protein_coding Interval_28330 chr11 75234449 75235194 + 0 NA intron (ENSMUSG00000045287.6, intron 1 of 1) protein_coding-intron (ENSMUSG00000045287.6, intron 1 of 1) 41038 ENSMUSG00000045287.6 ENSMUSG00000045287 ENSMUST00000102514 Rtn4rl1 protein_coding Interval_170519 chr9 108469415 108470267 + 0 NA exon (ENSMUSG00000102152.1, exon 1 of 1) TEC-exon (ENSMUSG00000102152.1, exon 1 of 1) 495 ENSMUSG00000102152.1 ENSMUSG00000102152 ENSMUST00000193107 Gm37475 TEC Interval_131512 chr5 137652442 137652955 + 0 NA intron (ENSMUSG00000029722.15, intron 5 of 6) protein_coding-intron (ENSMUSG00000029722.15, intron 10 of 11) -7161 ENSMUSG00000047182.6 ENSMUSG00000047182 ENSMUST00000057314 Irs3 protein_coding Interval_74059 chr17 46320801 46321058 + 0 NA intron (ENSMUSG00000032842.13, intron 1 of 4) protein_coding-intron (ENSMUSG00000032842.13, intron 5 of 19) 7047 ENSMUSG00000032842.13 ENSMUSG00000032842 ENSMUST00000170168 Abcc10 protein_coding Interval_164675 chr9 40482943 40483419 + 0 NA intron (ENSMUSG00000040111.17, intron 1 of 20) protein_coding-intron (ENSMUSG00000040111.17, intron 1 of 20) -4539 ENSMUSG00000111515.1 ENSMUSG00000111515 ENSMUST00000215697 Gm5055 processed_pseudogene Interval_25968 chr11 53237127 53237979 + 0 NA Intergenic Intergenic 36869 ENSMUSG00000058073.4 ENSMUSG00000058073 ENSMUST00000117979 Gm11189 processed_pseudogene Interval_22552 chr11 11732762 11733214 + 0 NA intron (ENSMUSG00000018654.17, intron 3 of 3) protein_coding-intron (ENSMUSG00000018654.17, intron 3 of 6) -36549 ENSMUSG00000073145.6 ENSMUSG00000073145 ENSMUST00000132007 Gm12000 antisense Interval_12657 chr10 4179671 4179983 + 0 NA Intergenic Intergenic 9940 ENSMUSG00000089473.1 ENSMUSG00000089473 ENSMUST00000158848 Gm25369 snoRNA Interval_171136 chr9 114704885 114705114 + 0 NA intron (ENSMUSG00000032435.9, intron 2 of 2) protein_coding-intron (ENSMUSG00000032435.9, intron 2 of 12) 16209 ENSMUSG00000032435.9 ENSMUSG00000032435 ENSMUST00000047404 Dync1li1 protein_coding Interval_108486 chr3 127572584 127573529 + 0 NA intron (ENSMUSG00000051278.12, intron 7 of 24) protein_coding-intron (ENSMUSG00000051278.12, intron 7 of 25) -15495 ENSMUSG00000105104.1 ENSMUSG00000105104 ENSMUST00000196949 Gm43729 antisense Interval_103060 chr3 34786774 34787692 + 0 NA Intergenic Intergenic 15158 ENSMUSG00000106519.1 ENSMUSG00000106519 ENSMUST00000197492 Gm38509 lincRNA Interval_161107 chr8 117498067 117499188 + 0 NA intron (ENSMUSG00000034330.10, intron 1 of 32) protein_coding-intron (ENSMUSG00000034330.10, intron 1 of 32) 336 ENSMUSG00000034330.10 ENSMUSG00000034330 ENSMUST00000081232 Plcg2 protein_coding Interval_55730 chr14 99353121 99356296 + 0 NA Intergenic Intergenic -2539 ENSMUSG00000084700.1 ENSMUSG00000084700 ENSMUST00000122751 Gm22984 snRNA Interval_2014 chr1 35898047 35898286 + 0 NA Intergenic Intergenic 18321 ENSMUSG00000102531.1 ENSMUSG00000102531 ENSMUST00000194261 1110002O04Rik lincRNA Interval_152041 chr7 128523240 128524468 + 0 NA exon (ENSMUSG00000030847.8, exon 1 of 4) protein_coding-exon (ENSMUSG00000030847.8, exon 1 of 4) 238 ENSMUSG00000030847.8 ENSMUSG00000030847 ENSMUST00000033136 Bag3 protein_coding Interval_39606 chr12 91511833 91512278 + 0 NA intron (ENSMUSG00000020963.15, intron 8 of 10) protein_coding-intron (ENSMUSG00000020963.15, intron 7 of 8) 30002 ENSMUSG00000099750.1 ENSMUSG00000099750 ENSMUST00000188341 Gm18827 processed_pseudogene Interval_109726 chr3 146345281 146345827 + 0 NA Intergenic Intergenic 21134 ENSMUSG00000105209.1 ENSMUSG00000105209 ENSMUST00000197740 Gm43334 TEC Interval_136214 chr6 52089110 52089421 + 0 NA Intergenic Intergenic -13729 ENSMUSG00000085412.7 ENSMUSG00000085412 ENSMUST00000155758 Halr1 lincRNA Interval_45479 chr13 55362174 55363298 + 0 NA promoter-TSS (ENSMUSG00000021484.8) protein_coding-promoter-TSS (ENSMUSG00000021484.8) -125 ENSMUSG00000021484.8 ENSMUSG00000021484 ENSMUST00000225366 Lman2 protein_coding Interval_51496 chr14 28518088 28518680 + 0 NA exon (ENSMUSG00000021994.15, exon 4 of 5) protein_coding-exon (ENSMUSG00000021994.15, exon 4 of 5) -6992 ENSMUSG00000097002.1 ENSMUSG00000097002 ENSMUST00000180668 Gm2670 antisense Interval_83689 chr19 3743788 3744672 + 0 NA Intergenic Intergenic -1693 ENSMUSG00000117773.1 ENSMUSG00000117773 ENSMUST00000235154 Gm50375 lincRNA Interval_9498 chr1 157982899 157984198 + 0 NA intron (ENSMUSG00000102789.1, intron 2 of 3) TEC-intron (ENSMUSG00000102789.1, intron 2 of 3) 43163 ENSMUSG00000102789.1 ENSMUSG00000102789 ENSMUST00000192097 Gm38256 TEC Interval_46497 chr13 66625132 66627464 + 0 NA Intergenic Intergenic -3393 ENSMUSG00000114814.1 ENSMUSG00000114814 ENSMUST00000223830 Gm48361 processed_pseudogene Interval_45444 chr13 55201903 55202522 + 0 NA Intergenic Intergenic -9858 ENSMUSG00000021488.8 ENSMUSG00000021488 ENSMUST00000225405 Nsd1 protein_coding Interval_156816 chr8 60771733 60772477 + 0 NA Intergenic Intergenic 14986 ENSMUSG00000109988.1 ENSMUSG00000109988 ENSMUST00000210857 Gm45651 processed_pseudogene Interval_77582 chr17 92344616 92344829 + 0 NA Intergenic Intergenic 28394 ENSMUSG00000117624.1 ENSMUSG00000117624 ENSMUST00000234379 Gm6751 processed_pseudogene Interval_109711 chr3 146204400 146206020 + 0 NA Intergenic Intergenic 14845 ENSMUSG00000011008.13 ENSMUSG00000011008 ENSMUST00000169984 Mcoln2 protein_coding Interval_11525 chr1 182474680 182475471 + 0 NA intron (ENSMUSG00000026509.15, intron 4 of 5) protein_coding-intron (ENSMUSG00000026509.15, intron 15 of 20) 6419 ENSMUSG00000026509.15 ENSMUSG00000026509 ENSMUST00000192483 Capn2 protein_coding Interval_164970 chr9 43520471 43520667 + 0 NA intron (ENSMUSG00000111110.1, intron 1 of 4) lincRNA-intron (ENSMUSG00000111110.1, intron 1 of 4) -4737 ENSMUSG00000111110.1 ENSMUSG00000111110 ENSMUST00000216439 Gm36855 lincRNA Interval_75839 chr17 71729062 71729483 + 0 NA exon (ENSMUSG00000045761.16, exon 20 of 20) protein_coding-exon (ENSMUSG00000045761.16, exon 20 of 20) -11455 ENSMUSG00000089779.1 ENSMUSG00000089779 ENSMUST00000161407 Gm15641 antisense Interval_97311 chr2 133582362 133583089 + 0 NA Intergenic Intergenic 1696 ENSMUSG00000064983.1 ENSMUSG00000064983 ENSMUST00000083049 Gm25258 snRNA Interval_156895 chr8 61522080 61522359 + 0 NA intron (ENSMUSG00000058056.16, intron 8 of 9) protein_coding-intron (ENSMUSG00000058056.16, intron 16 of 19) -6319 ENSMUSG00000058056.16 ENSMUSG00000058056 ENSMUST00000123523 Palld protein_coding Interval_106065 chr3 92153121 92153558 + 0 NA Intergenic Intergenic -10595 ENSMUSG00000027927.5 ENSMUSG00000027927 ENSMUST00000029535 Lelp1 protein_coding Interval_44873 chr13 49264479 49264744 + 0 NA intron (ENSMUSG00000037946.11, intron 17 of 17) protein_coding-intron (ENSMUSG00000037946.11, intron 17 of 17) -23993 ENSMUSG00000021384.14 ENSMUSG00000021384 ENSMUST00000131880 Susd3 protein_coding Interval_35966 chr12 32920310 32920639 + 0 NA intron (ENSMUSG00000097494.7, intron 5 of 5) lincRNA-intron (ENSMUSG00000097494.7, intron 5 of 5) 9473 ENSMUSG00000112124.1 ENSMUSG00000112124 ENSMUST00000218220 Gm19056 processed_pseudogene Interval_165544 chr9 49227474 49227833 + 0 NA Intergenic Intergenic -22878 ENSMUSG00000054156.8 ENSMUSG00000054156 ENSMUST00000067007 Gm4894 protein_coding Interval_116193 chr4 108592373 108593150 + 0 NA exon (ENSMUSG00000084968.1, exon 4 of 4) processed_transcript-exon (ENSMUSG00000084968.1, exon 4 of 4) 4739 ENSMUSG00000028587.18 ENSMUSG00000028587 ENSMUST00000129931 Orc1 protein_coding Interval_70221 chr17 6782095 6783819 + 0 NA promoter-TSS (ENSMUSG00000052397.8) protein_coding-promoter-TSS (ENSMUSG00000052397.8) -7836 ENSMUSG00000116893.1 ENSMUSG00000116893 ENSMUST00000231691 Gm49717 processed_pseudogene Interval_84384 chr19 10530032 10530237 + 0 NA intron (ENSMUSG00000034820.4, intron 2 of 8) protein_coding-intron (ENSMUSG00000034820.4, intron 2 of 9) -1693 ENSMUSG00000034820.4 ENSMUSG00000034820 ENSMUST00000236154 Cpsf7 protein_coding Interval_62115 chr15 87188705 87189823 + 0 NA Intergenic Intergenic 20151 ENSMUSG00000064631.1 ENSMUSG00000064631 ENSMUST00000082697 n-R5s42 rRNA Interval_164335 chr9 35448755 35449219 + 0 NA intron (ENSMUSG00000038119.15, intron 2 of 10) protein_coding-intron (ENSMUSG00000038119.15, intron 1 of 19) 25399 ENSMUSG00000038119.15 ENSMUSG00000038119 ENSMUST00000127264 Cdon protein_coding Interval_147863 chr7 74399184 74399992 + 0 NA intron (ENSMUSG00000085161.1, intron 2 of 3) protein_coding-intron (ENSMUSG00000025790.14, intron 2 of 9) 6890 ENSMUSG00000085161.1 ENSMUSG00000085161 ENSMUST00000132826 Gm7580 antisense Interval_73238 chr17 35723035 35723808 + 0 NA Intergenic Intergenic 16385 ENSMUSG00000092219.1 ENSMUSG00000092219 ENSMUST00000173840 Gm20443 lincRNA Interval_52203 chr14 40424231 40424467 + 0 NA Intergenic Intergenic 2834 ENSMUSG00000095140.1 ENSMUSG00000095140 ENSMUST00000177872 Gm24388 snRNA Interval_34219 chr11 121362154 121362685 + 0 NA intron (ENSMUSG00000025170.13, intron 2 of 4) protein_coding-intron (ENSMUSG00000025170.13, intron 2 of 5) -21231 ENSMUSG00000025173.13 ENSMUSG00000025173 ENSMUST00000127373 Wdr45b protein_coding Interval_161328 chr8 119777977 119779613 + 0 NA promoter-TSS (ENSMUSG00000034105.9) protein_coding-promoter-TSS (ENSMUSG00000034105.9) -401 ENSMUSG00000034105.9 ENSMUSG00000034105 ENSMUST00000212534 Meak7 protein_coding Interval_70830 chr17 15179739 15180740 + 0 NA Intergenic Intergenic 28080 ENSMUSG00000116655.1 ENSMUSG00000116655 ENSMUST00000231330 Gm35455 lincRNA Interval_22956 chr11 17953036 17954059 + 0 NA promoter-TSS (ENSMUSG00000086468.1) antisense-promoter-TSS (ENSMUSG00000086468.1) 328 ENSMUSG00000016984.7 ENSMUSG00000016984 ENSMUST00000076661 Etaa1 protein_coding Interval_53709 chr14 61056377 61057299 + 0 NA intron (ENSMUSG00000115627.1, intron 2 of 3) lincRNA-intron (ENSMUSG00000115627.1, intron 2 of 3) -6589 ENSMUSG00000115627.1 ENSMUSG00000115627 ENSMUST00000227839 Gm41168 lincRNA Interval_134521 chr6 29316371 29317863 + 0 NA Intergenic Intergenic -2023 ENSMUSG00000039742.15 ENSMUSG00000039742 ENSMUST00000166462 Fam71f1 protein_coding Interval_167062 chr9 64974388 64974787 + 0 NA intron (ENSMUSG00000034263.13, intron 7 of 12) protein_coding-intron (ENSMUSG00000034263.13, intron 7 of 12) -2794 ENSMUSG00000093119.1 ENSMUSG00000093119 ENSMUST00000175378 Gm25640 miRNA Interval_143014 chr6 148384560 148384886 + 0 NA intron (ENSMUSG00000030306.14, intron 5 of 16) protein_coding-intron (ENSMUSG00000030306.14, intron 5 of 19) 6606 ENSMUSG00000107706.1 ENSMUSG00000107706 ENSMUST00000203708 Gm44022 TEC Interval_146281 chr7 45105536 45107452 + 0 NA Intergenic Intergenic -2739 ENSMUSG00000003420.8 ENSMUSG00000003420 ENSMUST00000211535 Fcgrt protein_coding Interval_40321 chr12 103599268 103600939 + 0 NA intron (ENSMUSG00000021209.12, intron 2 of 5) protein_coding-intron (ENSMUSG00000021209.12, intron 16 of 24) 18705 ENSMUSG00000021209.12 ENSMUSG00000021209 ENSMUST00000190151 Ppp4r4 protein_coding Interval_93430 chr2 73012741 73013144 + 0 NA Intergenic Intergenic -26226 ENSMUSG00000079286.1 ENSMUSG00000079286 ENSMUST00000112062 Gm11084 protein_coding Interval_98459 chr2 152553892 152554344 + 0 NA promoter-TSS (ENSMUSG00000084935.1) lincRNA-promoter-TSS (ENSMUSG00000084935.1) -186 ENSMUSG00000084935.1 ENSMUSG00000084935 ENSMUST00000137020 Gm14161 lincRNA Interval_95910 chr2 118285297 118285768 + 0 NA intron (ENSMUSG00000040133.2, intron 1 of 2) protein_coding-intron (ENSMUSG00000040133.2, intron 1 of 2) -6102 ENSMUSG00000100046.1 ENSMUSG00000100046 ENSMUST00000189100 Gm29232 processed_transcript Interval_100534 chr2 169995937 169996697 + 0 NA intron (ENSMUSG00000047907.11, intron 1 of 1) protein_coding-intron (ENSMUSG00000047907.11, intron 1 of 1) -33130 ENSMUSG00000103935.1 ENSMUSG00000103935 ENSMUST00000194482 AY702102 TEC Interval_34752 chr12 9496397 9496645 + 0 NA intron (ENSMUSG00000114000.1, intron 1 of 3) lincRNA-intron (ENSMUSG00000114000.1, intron 1 of 3) 387 ENSMUSG00000114000.1 ENSMUSG00000114000 ENSMUST00000222557 Gm48762 lincRNA Interval_29866 chr11 87415895 87416698 + 0 NA intron (ENSMUSG00000010342.16, intron 1 of 30) protein_coding-intron (ENSMUSG00000010342.16, intron 1 of 30) -6571 ENSMUSG00000095969.1 ENSMUSG00000095969 ENSMUST00000093684 Rnu1a1 snRNA Interval_42565 chr13 15504286 15505065 + 0 NA intron (ENSMUSG00000021318.15, intron 2 of 9) protein_coding-intron (ENSMUSG00000021318.15, intron 2 of 14) -40939 ENSMUSG00000097806.3 ENSMUSG00000097806 ENSMUST00000193256 Gm6556 processed_transcript Interval_41574 chr12 116458322 116458608 + 0 NA intron (ENSMUSG00000042029.7, intron 1 of 1) protein_coding-intron (ENSMUSG00000042029.7, intron 28 of 28) 6285 ENSMUSG00000042029.7 ENSMUSG00000042029 ENSMUST00000222761 Ncapg2 protein_coding Interval_116075 chr4 107425729 107426106 + 0 NA Intergenic Intergenic -8655 ENSMUSG00000092723.1 ENSMUSG00000092723 ENSMUST00000174982 Gm24804 miRNA Interval_12557 chr1 195273545 195273743 + 0 NA Intergenic Intergenic -13796 ENSMUSG00000104297.1 ENSMUSG00000104297 ENSMUST00000192733 Gm38046 TEC Interval_52588 chr14 47716138 47716329 + 0 NA TTS (ENSMUSG00000021843.17) protein_coding-TTS (ENSMUSG00000021843.17) 41260 ENSMUSG00000115719.1 ENSMUSG00000115719 ENSMUST00000226197 4930538L07Rik lincRNA Interval_130397 chr5 127306580 127307325 + 0 NA intron (ENSMUSG00000034324.16, intron 1 of 8) protein_coding-intron (ENSMUSG00000034324.16, intron 1 of 8) -2065 ENSMUSG00000104971.1 ENSMUSG00000104971 ENSMUST00000196548 9430087B13Rik TEC Interval_47699 chr13 91394701 91395072 + 0 NA Intergenic Intergenic -6801 ENSMUSG00000097182.2 ENSMUSG00000097182 ENSMUST00000181054 A830009L08Rik lincRNA Interval_132436 chr5 144903799 144904097 + 0 NA intron (ENSMUSG00000038780.14, intron 1 of 18) protein_coding-intron (ENSMUSG00000038780.14, intron 1 of 17) -5954 ENSMUSG00000038780.14 ENSMUSG00000038780 ENSMUST00000198621 Smurf1 protein_coding Interval_18416 chr10 85639565 85640463 + 0 NA exon (ENSMUSG00000020042.15, exon 1 of 7) protein_coding-exon (ENSMUSG00000020042.15, exon 1 of 7) -5189 ENSMUSG00000020042.15 ENSMUSG00000020042 ENSMUST00000145433 Btbd11 protein_coding Interval_27295 chr11 65678846 65679481 + 0 NA Intergenic Intergenic 52769 ENSMUSG00000065104.1 ENSMUSG00000065104 ENSMUST00000083170 Gm26128 snRNA Interval_158880 chr8 87671218 87671894 + 0 NA intron (ENSMUSG00000045333.15, intron 5 of 5) protein_coding-intron (ENSMUSG00000045333.15, intron 6 of 6) 34899 ENSMUSG00000089301.1 ENSMUSG00000089301 ENSMUST00000158676 Gm24841 misc_RNA Interval_30975 chr11 97536895 97537926 + 0 NA promoter-TSS (ENSMUSG00000038453.17) protein_coding-promoter-TSS (ENSMUSG00000038453.17) -15515 ENSMUSG00000087042.1 ENSMUSG00000087042 ENSMUST00000134289 Gm11611 sense_intronic Interval_173776 chrX 103985105 103985401 + 0 NA Intergenic Intergenic -3969 ENSMUSG00000056537.11 ENSMUSG00000056537 ENSMUST00000135101 Rlim protein_coding Interval_28432 chr11 75835532 75836620 + 0 NA intron (ENSMUSG00000020847.15, intron 6 of 8) protein_coding-intron (ENSMUSG00000020847.15, intron 5 of 7) -24893 ENSMUSG00000087322.1 ENSMUSG00000087322 ENSMUST00000135873 Gm16075 antisense Interval_55744 chr14 99509871 99511021 + 0 NA Intergenic Intergenic -12099 ENSMUSG00000115580.1 ENSMUSG00000115580 ENSMUST00000228876 Gm41230 lincRNA Interval_46759 chr13 70007376 70008296 + 0 NA promoter-TSS (ENSMUSG00000113980.1) processed_pseudogene-promoter-TSS (ENSMUSG00000113980.1) -222 ENSMUSG00000113980.1 ENSMUSG00000113980 ENSMUST00000221449 Gm47655 processed_pseudogene Interval_144128 chr7 19558796 19559242 + 0 NA intron (ENSMUSG00000051403.9, intron 1 of 12) protein_coding-intron (ENSMUSG00000051403.9, intron 1 of 12) 18576 ENSMUSG00000044709.6 ENSMUSG00000044709 ENSMUST00000151646 Gemin7 protein_coding Interval_138274 chr6 86792737 86793847 + 0 NA intron (ENSMUSG00000029994.17, intron 1 of 12) protein_coding-intron (ENSMUSG00000029994.17, intron 1 of 12) 272 ENSMUSG00000029994.17 ENSMUSG00000029994 ENSMUST00000129772 Anxa4 protein_coding Interval_101465 chr2 181591882 181593259 + 0 NA exon (ENSMUSG00000000823.16, exon 1 of 17) protein_coding-exon (ENSMUSG00000000823.16, exon 1 of 17) -4602 ENSMUSG00000098824.1 ENSMUSG00000098824 ENSMUST00000183624 Mir7006 miRNA Interval_171945 chr9 122831845 122832070 + 0 NA intron (ENSMUSG00000046603.16, intron 9 of 10) protein_coding-intron (ENSMUSG00000046603.16, intron 9 of 10) 11929 ENSMUSG00000107504.3 ENSMUSG00000107504 ENSMUST00000203176 Gm35549 protein_coding Interval_39878 chr12 99328616 99330965 + 0 NA intron (ENSMUSG00000033713.12, intron 3 of 5) protein_coding-intron (ENSMUSG00000033713.12, intron 3 of 5) -11364 ENSMUSG00000033731.9 ENSMUSG00000033731 ENSMUST00000046994 3300002A11Rik antisense Interval_75489 chr17 67297940 67298972 + 0 NA intron (ENSMUSG00000033278.10, intron 1 of 19) protein_coding-intron (ENSMUSG00000033278.10, intron 1 of 32) -253151 ENSMUSG00000087829.1 ENSMUSG00000087829 ENSMUST00000157204 Gm22277 misc_RNA Interval_57135 chr15 6840080 6840543 + 0 NA intron (ENSMUSG00000022146.12, intron 7 of 17) protein_coding-intron (ENSMUSG00000022146.12, intron 7 of 17) 33946 ENSMUSG00000022146.12 ENSMUSG00000022146 ENSMUST00000177263 Osmr protein_coding Interval_65117 chr16 19865164 19866886 + 0 NA Intergenic Intergenic -13258 ENSMUSG00000116980.1 ENSMUSG00000116980 ENSMUST00000232498 Gm49597 processed_pseudogene Interval_74064 chr17 46339347 46339702 + 0 NA Intergenic Intergenic -11548 ENSMUSG00000032842.13 ENSMUSG00000032842 ENSMUST00000170168 Abcc10 protein_coding Interval_51882 chr14 33327924 33328552 + 0 NA intron (ENSMUSG00000063506.14, intron 1 of 5) protein_coding-intron (ENSMUSG00000063506.14, intron 1 of 5) 41905 ENSMUSG00000087639.1 ENSMUSG00000087639 ENSMUST00000137359 Gm15512 antisense Interval_26734 chr11 60087594 60087965 + 0 NA Intergenic Intergenic -11768 ENSMUSG00000098502.1 ENSMUSG00000098502 ENSMUST00000183502 Gm27511 misc_RNA Interval_26171 chr11 54874017 54874606 + 0 NA Intergenic Intergenic 7830 ENSMUSG00000020267.6 ENSMUSG00000020267 ENSMUST00000117710 Hint1 protein_coding Interval_162989 chr9 14244914 14245284 + 0 NA Intergenic Intergenic 5840 ENSMUSG00000111695.1 ENSMUSG00000111695 ENSMUST00000216064 Gm47565 lincRNA Interval_49033 chr13 107102975 107103204 + 0 NA Intergenic Intergenic 39396 ENSMUSG00000114311.1 ENSMUSG00000114311 ENSMUST00000224729 Gm31452 lincRNA Interval_135003 chr6 34487796 34488046 + 0 NA TTS (ENSMUSG00000038871.5) protein_coding-TTS (ENSMUSG00000038871.5) 10779 ENSMUSG00000038871.5 ENSMUSG00000038871 ENSMUST00000149131 Bpgm protein_coding Interval_2432 chr1 39308136 39308365 + 0 NA intron (ENSMUSG00000026077.15, intron 5 of 20) protein_coding-intron (ENSMUSG00000026077.15, intron 5 of 20) -6649 ENSMUSG00000092563.1 ENSMUSG00000092563 ENSMUST00000173076 Gm3617 processed_pseudogene Interval_47035 chr13 74569951 74570680 + 0 NA TTS (ENSMUSG00000113279.1) processed_pseudogene-TTS (ENSMUSG00000113279.1) 240 ENSMUSG00000113279.1 ENSMUSG00000113279 ENSMUST00000221881 Gm47470 processed_pseudogene Interval_88255 chr19 61192522 61192760 + 0 NA Intergenic Intergenic 8751 ENSMUSG00000069475.1 ENSMUSG00000069475 ENSMUST00000092094 Gm6020 protein_coding Interval_62375 chr15 91300909 91301570 + 0 NA intron (ENSMUSG00000036298.10, intron 7 of 9) protein_coding-intron (ENSMUSG00000036298.10, intron 7 of 9) 101745 ENSMUSG00000078932.8 ENSMUSG00000078932 ENSMUST00000109284 CN725425 protein_coding Interval_51432 chr14 27456245 27456416 + 0 NA intron (ENSMUSG00000040651.9, intron 11 of 23) protein_coding-intron (ENSMUSG00000040651.9, intron 11 of 23) -20840 ENSMUSG00000040651.9 ENSMUSG00000040651 ENSMUST00000225139 Tasor protein_coding Interval_108220 chr3 122565011 122566009 + 0 NA intron (ENSMUSG00000106194.1, intron 1 of 2) protein_coding-intron (ENSMUSG00000039735.16, intron 5 of 13) 460 ENSMUSG00000106194.1 ENSMUSG00000106194 ENSMUST00000196200 Gm43569 antisense Interval_1656 chr1 30834075 30834414 + 0 NA exon (ENSMUSG00000103783.1, exon 1 of 1) TEC-exon (ENSMUSG00000103783.1, exon 1 of 1) 2187 ENSMUSG00000103783.1 ENSMUSG00000103783 ENSMUST00000195437 Gm37522 TEC Interval_60537 chr15 74706065 74706796 + 0 NA exon (ENSMUSG00000046380.3, exon 2 of 2) protein_coding-exon (ENSMUSG00000046380.3, exon 2 of 2) -2731 ENSMUSG00000044276.2 ENSMUSG00000044276 ENSMUST00000056711 4933427E11Rik antisense Interval_138076 chr6 85008139 85008438 + 0 NA intron (ENSMUSG00000033769.16, intron 1 of 13) protein_coding-intron (ENSMUSG00000033769.16, intron 2 of 16) -54286 ENSMUSG00000107629.1 ENSMUSG00000107629 ENSMUST00000203336 Gm44011 processed_pseudogene Interval_25276 chr11 46064769 46065821 + 0 NA TTS (ENSMUSG00000011256.16) protein_coding-TTS (ENSMUSG00000011256.16) -12974 ENSMUSG00000069899.3 ENSMUSG00000069899 ENSMUST00000154156 Gm12166 protein_coding Interval_54106 chr14 65357900 65359297 + 0 NA promoter-TSS (ENSMUSG00000034522.10) protein_coding-promoter-TSS (ENSMUSG00000034522.10) 64 ENSMUSG00000034522.10 ENSMUSG00000034522 ENSMUST00000225512 Zfp395 protein_coding Interval_152449 chr7 133073770 133074600 + 0 NA intron (ENSMUSG00000030970.16, intron 2 of 3) protein_coding-intron (ENSMUSG00000030970.16, intron 2 of 10) 46086 ENSMUSG00000110282.1 ENSMUSG00000110282 ENSMUST00000209529 B930086L07Rik TEC Interval_3897 chr1 64575997 64576973 + 0 NA promoter-TSS (ENSMUSG00000025958.14) protein_coding-promoter-TSS (ENSMUSG00000025958.14) 97 ENSMUSG00000025958.14 ENSMUSG00000025958 ENSMUST00000190979 Creb1 protein_coding Interval_129728 chr5 121999283 121999916 + 0 NA intron (ENSMUSG00000042589.18, intron 1 of 6) protein_coding-intron (ENSMUSG00000042589.18, intron 2 of 22) -25731 ENSMUSG00000105795.1 ENSMUSG00000105795 ENSMUST00000198001 Gm3970 antisense Interval_94568 chr2 92321888 92322623 + 0 NA intron (ENSMUSG00000058318.15, intron 3 of 13) protein_coding-intron (ENSMUSG00000058318.15, intron 5 of 15) 10101 ENSMUSG00000081730.1 ENSMUSG00000081730 ENSMUST00000119099 Gm13785 processed_pseudogene Interval_11834 chr1 186089046 186089303 + 0 NA intron (ENSMUSG00000039246.8, intron 3 of 3) protein_coding-intron (ENSMUSG00000039246.8, intron 4 of 4) 23199 ENSMUSG00000103056.1 ENSMUSG00000103056 ENSMUST00000195813 Gm38268 TEC Interval_77968 chr18 6229530 6229816 + 0 NA intron (ENSMUSG00000006740.14, intron 3 of 16) protein_coding-intron (ENSMUSG00000006740.14, intron 2 of 25) -11141 ENSMUSG00000117519.1 ENSMUSG00000117519 ENSMUST00000234972 Gm41664 antisense Interval_18611 chr10 88444015 88445205 + 0 NA TTS (ENSMUSG00000087429.1) antisense-TTS (ENSMUSG00000087429.1) 1324 ENSMUSG00000087429.1 ENSMUSG00000087429 ENSMUST00000149562 Gm16235 antisense Interval_16251 chr10 61723470 61723717 + 0 NA intron (ENSMUSG00000020085.15, intron 1 of 8) protein_coding-intron (ENSMUSG00000020085.15, intron 1 of 9) -4555 ENSMUSG00000020085.15 ENSMUSG00000020085 ENSMUST00000140664 Aifm2 protein_coding Interval_169536 chr9 98964918 98965732 + 0 NA Intergenic Intergenic 10037 ENSMUSG00000050397.4 ENSMUSG00000050397 ENSMUST00000051312 Foxl2 protein_coding Interval_120361 chr4 148094332 148094790 + 0 NA Intergenic Intergenic -9785 ENSMUSG00000029007.8 ENSMUSG00000029007 ENSMUST00000137393 Agtrap protein_coding Interval_138364 chr6 87631655 87632627 + 0 NA intron (ENSMUSG00000030051.10, intron 9 of 9) protein_coding-intron (ENSMUSG00000030051.10, intron 9 of 10) -25613 ENSMUSG00000107593.1 ENSMUSG00000107593 ENSMUST00000204112 Gm44097 antisense Interval_28142 chr11 73137569 73138908 + 0 NA promoter-TSS (ENSMUSG00000050107.2) protein_coding-promoter-TSS (ENSMUSG00000050107.2) 56 ENSMUSG00000050107.2 ENSMUSG00000050107 ENSMUST00000052140 Haspin protein_coding Interval_28162 chr11 73329078 73330426 + 0 NA promoter-TSS (ENSMUSG00000112920.1) protein_coding-promoter-TSS (ENSMUSG00000112920.1) 11 ENSMUSG00000069825.12 ENSMUSG00000069825 ENSMUST00000117445 Gm49340 protein_coding Interval_46513 chr13 66744638 66745414 + 0 NA Intergenic Intergenic -3713 ENSMUSG00000114839.1 ENSMUSG00000114839 ENSMUST00000225542 Gm40989 processed_pseudogene Interval_44705 chr13 47294604 47295405 + 0 NA Intergenic Intergenic 45935 ENSMUSG00000114958.1 ENSMUSG00000114958 ENSMUST00000224746 Gm48612 lincRNA Interval_99288 chr2 158688160 158688853 + 0 NA intron (ENSMUSG00000037754.13, intron 1 of 10) protein_coding-intron (ENSMUSG00000037754.13, intron 1 of 10) -7629 ENSMUSG00000037754.13 ENSMUSG00000037754 ENSMUST00000145073 Ppp1r16b protein_coding Interval_51903 chr14 33673608 33673991 + 0 NA Intergenic Intergenic 29304 ENSMUSG00000064446.1 ENSMUSG00000064446 ENSMUST00000082512 Gm26228 snRNA Interval_21150 chr10 126918967 126920455 + 0 NA Intergenic Intergenic -18361 ENSMUSG00000025436.12 ENSMUSG00000025436 ENSMUST00000220051 Atp23 protein_coding Interval_169972 chr9 103337286 103338380 + 0 NA TTS (ENSMUSG00000032555.10) protein_coding-TTS (ENSMUSG00000032555.10) -6103 ENSMUSG00000032555.10 ENSMUSG00000032555 ENSMUST00000185972 Topbp1 protein_coding Interval_158871 chr8 87608341 87609335 + 0 NA Intergenic Intergenic -27819 ENSMUSG00000089301.1 ENSMUSG00000089301 ENSMUST00000158676 Gm24841 misc_RNA Interval_143660 chr7 14049463 14050577 + 0 NA Intergenic Intergenic 43362 ENSMUSG00000099744.1 ENSMUSG00000099744 ENSMUST00000186718 Tmem167-ps3 processed_pseudogene Interval_8495 chr1 140171696 140172200 + 0 NA intron (ENSMUSG00000026365.15, intron 1 of 12) protein_coding-intron (ENSMUSG00000026365.15, intron 1 of 21) 11816 ENSMUSG00000026365.15 ENSMUSG00000026365 ENSMUST00000194688 Cfh protein_coding Interval_97338 chr2 134816734 134816987 + 0 NA intron (ENSMUSG00000051177.16, intron 2 of 6) protein_coding-intron (ENSMUSG00000051177.16, intron 2 of 31) 12911 ENSMUSG00000082399.1 ENSMUSG00000082399 ENSMUST00000118248 Gm14036 processed_pseudogene Interval_144693 chr7 27563276 27563520 + 0 NA intron (ENSMUSG00000049643.15, intron 2 of 6) protein_coding-intron (ENSMUSG00000049643.15, intron 3 of 9) 10131 ENSMUSG00000049643.15 ENSMUSG00000049643 ENSMUST00000186501 2310022A10Rik protein_coding Interval_138198 chr6 86141635 86142290 + 0 NA Intergenic Intergenic -5190 ENSMUSG00000107857.1 ENSMUSG00000107857 ENSMUST00000203685 Gm19596 unprocessed_pseudogene Interval_173813 chrX 104760561 104760968 + 0 NA Intergenic Intergenic 14282 ENSMUSG00000083049.1 ENSMUSG00000083049 ENSMUST00000122247 Gm14822 processed_pseudogene Interval_4626 chr1 75511497 75513077 + 0 NA Intergenic Intergenic 1996 ENSMUSG00000082745.1 ENSMUSG00000082745 ENSMUST00000120142 Gm15181 unprocessed_pseudogene Interval_158575 chr8 84591934 84592612 + 0 NA intron (ENSMUSG00000034656.18, intron 32 of 48) protein_coding-intron (ENSMUSG00000034656.18, intron 30 of 46) 24911 ENSMUSG00000086067.1 ENSMUSG00000086067 ENSMUST00000127527 Gm16183 antisense Interval_148879 chr7 89682156 89682606 + 0 NA intron (ENSMUSG00000030621.17, intron 2 of 6) protein_coding-intron (ENSMUSG00000030621.17, intron 1 of 13) -49257 ENSMUSG00000092071.1 ENSMUSG00000092071 ENSMUST00000172178 A230065N10Rik antisense Interval_162145 chr8 125504720 125505504 + 0 NA intron (ENSMUSG00000001995.9, intron 2 of 22) protein_coding-intron (ENSMUSG00000001995.9, intron 2 of 21) 64696 ENSMUSG00000001995.9 ENSMUSG00000001995 ENSMUST00000212604 Sipa1l2 protein_coding Interval_45256 chr13 53563803 53564262 + 0 NA Intergenic Intergenic -30775 ENSMUSG00000113834.1 ENSMUSG00000113834 ENSMUST00000223156 Gm34022 lincRNA Interval_71127 chr17 19164444 19164670 + 0 NA intron (ENSMUSG00000093533.3, intron 5 of 5) polymorphic_pseudogene-intron (ENSMUSG00000093533.3, intron 5 of 5) 23089 ENSMUSG00000093533.3 ENSMUSG00000093533 ENSMUST00000177481 Vmn2r127 polymorphic_pseudogene Interval_28825 chr11 78550234 78551381 + 0 NA promoter-TSS (ENSMUSG00000037278.9) protein_coding-promoter-TSS (ENSMUSG00000037278.9) -30 ENSMUSG00000037278.9 ENSMUSG00000037278 ENSMUST00000103242 Tmem97 protein_coding Interval_156699 chr8 57435363 57436847 + 0 NA Intergenic Intergenic -19818 ENSMUSG00000031610.3 ENSMUSG00000031610 ENSMUST00000034023 Scrg1 protein_coding Interval_134686 chr6 30373723 30374724 + 0 NA TTS (ENSMUSG00000039130.18) protein_coding-TTS (ENSMUSG00000039130.18) -4878 ENSMUSG00000065662.1 ENSMUSG00000065662 ENSMUST00000083728 n-R5s161 rRNA Interval_157789 chr8 73223611 73223806 + 0 NA intron (ENSMUSG00000004383.18, intron 1 of 14) protein_coding-intron (ENSMUSG00000004383.18, intron 1 of 14) -48450 ENSMUSG00000089447.1 ENSMUSG00000089447 ENSMUST00000158822 Gm22532 snoRNA Interval_16750 chr10 67921907 67922200 + 0 NA Intergenic Intergenic -9618 ENSMUSG00000037855.15 ENSMUSG00000037855 ENSMUST00000138543 Zfp365 protein_coding Interval_144821 chr7 28451557 28452344 + 0 NA promoter-TSS (ENSMUSG00000030600.15) protein_coding-promoter-TSS (ENSMUSG00000030600.15) -288 ENSMUSG00000030600.15 ENSMUSG00000030600 ENSMUST00000108288 Lrfn1 protein_coding Interval_142801 chr6 145814798 145815988 + 0 NA TTS (ENSMUSG00000030259.12) protein_coding-TTS (ENSMUSG00000030259.12) -47904 ENSMUSG00000108126.1 ENSMUSG00000108126 ENSMUST00000203443 Gm43909 TEC Interval_145516 chr7 35322260 35323459 + 0 NA Intergenic Intergenic -37540 ENSMUSG00000063808.14 ENSMUSG00000063808 ENSMUST00000153778 Gpatch1 protein_coding Interval_149865 chr7 102083218 102084629 + 0 NA TTS (ENSMUSG00000099481.6) protein_coding-TTS (ENSMUSG00000099481.6) 807 ENSMUSG00000100254.1 ENSMUSG00000100254 ENSMUST00000124189 Trpc2 protein_coding Interval_36897 chr12 55036801 55037196 + 0 NA Intergenic Intergenic 29919 ENSMUSG00000113467.1 ENSMUSG00000113467 ENSMUST00000222661 Gm46350 processed_pseudogene Interval_38411 chr12 78818216 78818494 + 0 NA intron (ENSMUSG00000021112.9, intron 6 of 14) protein_coding-intron (ENSMUSG00000021112.9, intron 6 of 14) 43140 ENSMUSG00000021114.9 ENSMUSG00000021114 ENSMUST00000219891 Atp6v1d protein_coding Interval_130315 chr5 125614507 125614909 + 0 NA intron (ENSMUSG00000070498.3, intron 1 of 8) protein_coding-intron (ENSMUSG00000070498.3, intron 1 of 8) 82934 ENSMUSG00000070498.3 ENSMUSG00000070498 ENSMUST00000184422 Tmem132b protein_coding Interval_170541 chr9 108601693 108602745 + 0 NA TTS (ENSMUSG00000064145.12) protein_coding-TTS (ENSMUSG00000064145.12) -4643 ENSMUSG00000006675.10 ENSMUSG00000006675 ENSMUST00000193621 P4htm protein_coding Interval_21586 chr10 130313419 130314145 + 0 NA Intergenic Intergenic -14962 ENSMUSG00000034833.10 ENSMUSG00000034833 ENSMUST00000220164 Tespa1 protein_coding Interval_74229 chr17 47592889 47593894 + 0 NA promoter-TSS (ENSMUSG00000034165.16) protein_coding-promoter-TSS (ENSMUSG00000034165.16) -2933 ENSMUSG00000034165.16 ENSMUSG00000034165 ENSMUST00000183206 Ccnd3 protein_coding Interval_84405 chr19 10665229 10665877 + 0 NA exon (ENSMUSG00000043789.8, exon 20 of 20) protein_coding-exon (ENSMUSG00000043789.8, exon 20 of 20) 5420 ENSMUSG00000024738.6 ENSMUSG00000024738 ENSMUST00000225016 Pga5 protein_coding Interval_42588 chr13 16020599 16020993 + 0 NA intron (ENSMUSG00000041324.14, intron 2 of 2) protein_coding-intron (ENSMUSG00000041324.14, intron 4 of 4) 2627 ENSMUSG00000113701.1 ENSMUSG00000113701 ENSMUST00000223006 B230303A05Rik transcribed_processed_pseudogene Interval_58443 chr15 34548597 34548803 + 0 NA Intergenic Intergenic 16986 ENSMUSG00000084607.1 ENSMUSG00000084607 ENSMUST00000122658 Gm22208 snRNA Interval_121733 chr5 5955897 5956857 + 0 NA Intergenic Intergenic 58647 ENSMUSG00000088692.1 ENSMUSG00000088692 ENSMUST00000158067 Gm23838 snRNA Interval_70268 chr17 7863599 7863881 + 0 NA Intergenic Intergenic -36438 ENSMUSG00000071984.11 ENSMUSG00000071984 ENSMUST00000167580 Fndc1 protein_coding Interval_105151 chr3 82768852 82769088 + 0 NA Intergenic Intergenic 14446 ENSMUSG00000104898.1 ENSMUSG00000104898 ENSMUST00000196689 Gm30043 lincRNA Interval_37755 chr12 71725512 71725772 + 0 NA TTS (ENSMUSG00000084463.1) misc_RNA-TTS (ENSMUSG00000084463.1) 990 ENSMUSG00000084463.1 ENSMUSG00000084463 ENSMUST00000122514 Gm22959 misc_RNA Interval_107222 chr3 104714040 104715430 + 0 NA Intergenic Intergenic 8150 ENSMUSG00000100466.1 ENSMUSG00000100466 ENSMUST00000190305 Gm29572 TEC Interval_162700 chr9 7907287 7908781 + 0 NA Intergenic Intergenic -47708 ENSMUSG00000032000.17 ENSMUSG00000032000 ENSMUST00000159672 Birc3 protein_coding Interval_168933 chr9 89163737 89164065 + 0 NA intron (ENSMUSG00000074146.9, intron 7 of 24) lincRNA-intron (ENSMUSG00000074146.9, intron 7 of 11) 4902 ENSMUSG00000077465.1 ENSMUSG00000077465 ENSMUST00000104277 Gm26423 snoRNA Interval_53778 chr14 61686347 61687313 + 0 NA Intergenic Intergenic 3320 ENSMUSG00000104187.1 ENSMUSG00000104187 ENSMUST00000194021 Gm37820 TEC Interval_19758 chr10 108535749 108536068 + 0 NA intron (ENSMUSG00000035864.14, intron 10 of 11) protein_coding-intron (ENSMUSG00000035864.14, intron 9 of 10) 53258 ENSMUSG00000112065.1 ENSMUSG00000112065 ENSMUST00000217917 Gm47466 processed_pseudogene Interval_59210 chr15 48570079 48572216 + 0 NA intron (ENSMUSG00000022311.15, intron 3 of 70) protein_coding-intron (ENSMUSG00000022311.15, intron 3 of 70) 19839 ENSMUSG00000065742.1 ENSMUSG00000065742 ENSMUST00000083808 Gm25007 snRNA Interval_36502 chr12 46637954 46638314 + 0 NA Intergenic Intergenic 27575 ENSMUSG00000112174.1 ENSMUSG00000112174 ENSMUST00000217951 Gm48535 lincRNA Interval_34202 chr11 121259283 121260785 + 0 NA promoter-TSS (ENSMUSG00000039275.9) protein_coding-promoter-TSS (ENSMUSG00000039275.9) 15496 ENSMUSG00000000056.7 ENSMUSG00000000056 ENSMUST00000151088 Narf protein_coding Interval_87822 chr19 56292175 56292735 + 0 NA intron (ENSMUSG00000025075.14, intron 1 of 9) protein_coding-intron (ENSMUSG00000025075.14, intron 2 of 13) 4459 ENSMUSG00000025075.14 ENSMUSG00000025075 ENSMUST00000165522 Habp2 protein_coding Interval_107710 chr3 111515391 111515613 + 0 NA Intergenic Intergenic -192645 ENSMUSG00000106100.1 ENSMUSG00000106100 ENSMUST00000199881 Gm9314 processed_pseudogene Interval_75718 chr17 70841816 70842420 + 0 NA Intergenic Intergenic 7454 ENSMUSG00000093622.1 ENSMUSG00000093622 ENSMUST00000175668 Gm20703 lincRNA Interval_139889 chr6 112396095 112396574 + 0 NA Intergenic Intergenic -2517 ENSMUSG00000107541.1 ENSMUSG00000107541 ENSMUST00000203696 Gm44336 processed_pseudogene Interval_90568 chr2 31196809 31197436 + 0 NA intron (ENSMUSG00000000194.13, intron 1 of 1) protein_coding-intron (ENSMUSG00000000194.13, intron 14 of 17) 7431 ENSMUSG00000088891.1 ENSMUSG00000088891 ENSMUST00000158266 Gm22516 snoRNA Interval_82443 chr18 74042584 74044252 + 0 NA intron (ENSMUSG00000024558.12, intron 1 of 1) protein_coding-intron (ENSMUSG00000024558.12, intron 1 of 5) 20974 ENSMUSG00000024558.12 ENSMUSG00000024558 ENSMUST00000160601 Mapk4 protein_coding Interval_118383 chr4 131002211 131003249 + 0 NA intron (ENSMUSG00000086262.7, intron 4 of 4) lincRNA-intron (ENSMUSG00000086262.7, intron 4 of 4) 7744 ENSMUSG00000086262.7 ENSMUSG00000086262 ENSMUST00000153810 A930031H19Rik lincRNA Interval_49371 chr13 111533575 111534454 + 0 NA intron (ENSMUSG00000085634.2, intron 1 of 1) lincRNA-intron (ENSMUSG00000085634.2, intron 1 of 1) 15897 ENSMUSG00000085634.2 ENSMUSG00000085634 ENSMUST00000132880 Gm15290 lincRNA Interval_107066 chr3 103260599 103261135 + 0 NA Intergenic Intergenic -13604 ENSMUSG00000104976.1 ENSMUSG00000104976 ENSMUST00000200621 Gm43060 processed_pseudogene Interval_130671 chr5 129626252 129627053 + 0 NA Intergenic Intergenic -2781 ENSMUSG00000057244.6 ENSMUSG00000057244 ENSMUST00000079261 Gm6139 processed_pseudogene Interval_68681 chr16 84702567 84703726 + 0 NA promoter-TSS (ENSMUSG00000097418.7) lincRNA-promoter-TSS (ENSMUSG00000097418.7) -21 ENSMUSG00000097418.7 ENSMUSG00000097418 ENSMUST00000180991 Mir155hg lincRNA Interval_62890 chr15 97751745 97752041 + 0 NA intron (ENSMUSG00000022469.17, intron 17 of 26) protein_coding-intron (ENSMUSG00000022469.17, intron 18 of 25) -8515 ENSMUSG00000086601.1 ENSMUSG00000086601 ENSMUST00000149373 Rapgef3os1 antisense Interval_62363 chr15 91086760 91087703 + 0 NA Intergenic Intergenic 13069 ENSMUSG00000115952.1 ENSMUSG00000115952 ENSMUST00000230093 Gm18814 processed_pseudogene Interval_40220 chr12 102618285 102619264 + 0 NA TTS (ENSMUSG00000095174.1) antisense-TTS (ENSMUSG00000095174.1) 6094 ENSMUSG00000095174.1 ENSMUSG00000095174 ENSMUST00000178938 Gm20069 antisense Interval_167498 chr9 70047413 70049642 + 0 NA Intergenic Intergenic -10439 ENSMUSG00000032226.5 ENSMUSG00000032226 ENSMUST00000034751 Gcnt3 protein_coding Interval_109741 chr3 146470931 146471192 + 0 NA intron (ENSMUSG00000028188.13, intron 1 of 3) protein_coding-intron (ENSMUSG00000028188.13, intron 10 of 14) -1322 ENSMUSG00000028188.13 ENSMUSG00000028188 ENSMUST00000093951 Spata1 protein_coding Interval_6391 chr1 106816086 106817330 + 0 NA Intergenic Intergenic -36084 ENSMUSG00000009907.17 ENSMUSG00000009907 ENSMUST00000126057 Vps4b protein_coding Interval_92290 chr2 58457673 58458089 + 0 NA intron (ENSMUSG00000026836.15, intron 10 of 11) protein_coding-intron (ENSMUSG00000026836.15, intron 9 of 10) -12235 ENSMUSG00000091922.1 ENSMUSG00000091922 ENSMUST00000167423 Gm17409 TEC Interval_128269 chr5 112199418 112200368 + 0 NA Intergenic Intergenic -6913 ENSMUSG00000101683.6 ENSMUSG00000101683 ENSMUST00000187272 1700028D13Rik lincRNA Interval_305 chr1 3400154 3400450 + 0 NA intron (ENSMUSG00000051951.5, intron 2 of 2) protein_coding-intron (ENSMUSG00000051951.5, intron 2 of 2) -22514 ENSMUSG00000104017.1 ENSMUSG00000104017 ENSMUST00000192336 Gm37363 TEC Interval_46244 chr13 62919561 62919841 + 0 NA Intergenic Intergenic 29741 ENSMUSG00000113057.1 ENSMUSG00000113057 ENSMUST00000221723 Gm48812 lincRNA Interval_5917 chr1 93214595 93214946 + 0 NA intron (ENSMUSG00000084989.3, intron 24 of 31) protein_coding-intron (ENSMUSG00000084989.3, intron 24 of 31) -21081 ENSMUSG00000047793.13 ENSMUSG00000047793 ENSMUST00000165883 Sned1 protein_coding Interval_154560 chr8 19515799 19516437 + 0 NA Intergenic Intergenic -1721 ENSMUSG00000082650.1 ENSMUSG00000082650 ENSMUST00000119249 Gm15358 processed_pseudogene Interval_26369 chr11 57429441 57429708 + 0 NA Intergenic Intergenic -19533 ENSMUSG00000082476.1 ENSMUSG00000082476 ENSMUST00000118824 Gm12242 processed_pseudogene Interval_36108 chr12 35908756 35909199 + 0 NA Intergenic Intergenic -16645 ENSMUSG00000036231.5 ENSMUSG00000036231 ENSMUST00000154042 Agr3 protein_coding Interval_125046 chr5 64092597 64093495 + 0 NA promoter-TSS (ENSMUSG00000029171.12) protein_coding-promoter-TSS (ENSMUSG00000029171.12) 8461 ENSMUSG00000094244.1 ENSMUSG00000094244 ENSMUST00000175062 Gm23967 miRNA Interval_130652 chr5 129489837 129490200 + 0 NA Intergenic Intergenic 10983 ENSMUSG00000104873.1 ENSMUSG00000104873 ENSMUST00000199847 Gm40332 TEC Interval_119319 chr4 136852522 136853114 + 0 NA Intergenic Intergenic 33369 ENSMUSG00000036905.8 ENSMUSG00000036905 ENSMUST00000046384 C1qb protein_coding Interval_87168 chr19 46565913 46566184 + 0 NA intron (ENSMUSG00000025035.9, intron 1 of 6) protein_coding-intron (ENSMUSG00000025035.9, intron 1 of 5) -7656 ENSMUSG00000025035.9 ENSMUSG00000025035 ENSMUST00000235489 Arl3 protein_coding Interval_168177 chr9 77776419 77777865 + 0 NA intron (ENSMUSG00000032350.9, intron 3 of 3) protein_coding-intron (ENSMUSG00000032350.9, intron 3 of 15) 11000 ENSMUSG00000032350.9 ENSMUSG00000032350 ENSMUST00000216848 Gclc protein_coding Interval_74369 chr17 49607448 49608155 + 0 NA Intergenic Intergenic -7371 ENSMUSG00000023999.14 ENSMUSG00000023999 ENSMUST00000159354 Kif6 protein_coding Interval_104033 chr3 57558602 57559384 + 0 NA intron (ENSMUSG00000027803.14, intron 2 of 6) protein_coding-intron (ENSMUSG00000027803.14, intron 2 of 6) 16917 ENSMUSG00000027803.14 ENSMUSG00000027803 ENSMUST00000120977 Wwtr1 protein_coding Interval_30323 chr11 93614385 93615365 + 0 NA Intergenic Intergenic -35884 ENSMUSG00000082453.1 ENSMUSG00000082453 ENSMUST00000120917 Gm11502 processed_pseudogene Interval_14029 chr10 25695206 25696755 + 0 NA Intergenic Intergenic 11963 ENSMUSG00000112803.1 ENSMUSG00000112803 ENSMUST00000217933 Gm36543 lincRNA Interval_84061 chr19 7013954 7014663 + 0 NA TTS (ENSMUSG00000024965.9) protein_coding-TTS (ENSMUSG00000024965.9) 5037 ENSMUSG00000024965.9 ENSMUSG00000024965 ENSMUST00000238171 Fermt3 protein_coding Interval_117601 chr4 124944957 124945365 + 0 NA TTS (ENSMUSG00000044730.17) protein_coding-TTS (ENSMUSG00000044730.17) 2030 ENSMUSG00000044730.17 ENSMUSG00000044730 ENSMUST00000233875 9930104L06Rik protein_coding Interval_67501 chr16 49955389 49956532 + 0 NA Intergenic Intergenic 100315 ENSMUSG00000055447.19 ENSMUSG00000055447 ENSMUST00000229104 Cd47 protein_coding Interval_77820 chr18 4052544 4052921 + 0 NA promoter-TSS (ENSMUSG00000117565.1) processed_pseudogene-promoter-TSS (ENSMUSG00000117565.1) -196 ENSMUSG00000117565.1 ENSMUSG00000117565 ENSMUST00000234182 Gm6248 processed_pseudogene Interval_131777 chr5 139809486 139809799 + 0 NA intron (ENSMUSG00000098140.1, intron 2 of 3) protein_coding-intron (ENSMUSG00000036687.13, intron 2 of 8) 10275 ENSMUSG00000036687.13 ENSMUSG00000036687 ENSMUST00000147328 Tmem184a protein_coding Interval_70566 chr17 12056684 12056939 + 0 NA intron (ENSMUSG00000023826.16, intron 10 of 10) protein_coding-intron (ENSMUSG00000023826.16, intron 2 of 2) -62518 ENSMUSG00000023827.8 ENSMUSG00000023827 ENSMUST00000167905 Agpat4 protein_coding Interval_160868 chr8 114369169 114369954 + 0 NA exon (ENSMUSG00000046844.6, exon 1 of 2) protein_coding-exon (ENSMUSG00000046844.6, exon 1 of 2) -18082 ENSMUSG00000084848.1 ENSMUSG00000084848 ENSMUST00000139864 4933408N05Rik antisense Interval_160437 chr8 109500351 109500550 + 0 NA intron (ENSMUSG00000031727.8, intron 2 of 19) protein_coding-intron (ENSMUSG00000031727.8, intron 3 of 20) 5406 ENSMUSG00000031727.8 ENSMUSG00000031727 ENSMUST00000212003 Pmfbp1 protein_coding Interval_96726 chr2 127484469 127484910 + 0 NA intron (ENSMUSG00000079056.12, intron 2 of 8) protein_coding-intron (ENSMUSG00000079056.12, intron 2 of 8) -11381 ENSMUSG00000084628.1 ENSMUSG00000084628 ENSMUST00000122679 Gm22613 misc_RNA Interval_128496 chr5 113652171 113652684 + 0 NA Intergenic Intergenic -2031 ENSMUSG00000042190.12 ENSMUSG00000042190 ENSMUST00000151460 Cmklr1 protein_coding Interval_97417 chr2 135984935 135986001 + 0 NA intron (ENSMUSG00000039943.16, intron 28 of 36) protein_coding-intron (ENSMUSG00000039943.16, intron 27 of 35) 40783 ENSMUSG00000064444.1 ENSMUSG00000064444 ENSMUST00000082510 Gm26227 snRNA Interval_288 KZ289085.1 174601 174865 + 0 NA NA NA NA NA Interval_27627 chr11 69117727 69119163 + 0 NA Intergenic Intergenic -1959 ENSMUSG00000023781.2 ENSMUSG00000023781 ENSMUST00000024543 Hes7 protein_coding Interval_135543 chr6 40263236 40263964 + 0 NA Intergenic Intergenic 37381 ENSMUSG00000102287.1 ENSMUSG00000102287 ENSMUST00000194702 Gm37003 TEC Interval_104538 chr3 67534812 67535105 + 0 NA Intergenic Intergenic 18467 ENSMUSG00000103718.1 ENSMUSG00000103718 ENSMUST00000195865 Gm35299 lincRNA Interval_135199 chr6 37447534 37448222 + 0 NA Intergenic Intergenic -91803 ENSMUSG00000038641.12 ENSMUSG00000038641 ENSMUST00000123648 Akr1d1 protein_coding Interval_98239 chr2 150320549 150320912 + 0 NA intron (ENSMUSG00000095315.2, intron 1 of 3) protein_coding-intron (ENSMUSG00000063364.10, intron 3 of 3) 9299 ENSMUSG00000095315.2 ENSMUSG00000095315 ENSMUST00000133235 Gm10130 protein_coding Interval_118793 chr4 133740398 133740784 + 0 NA intron (ENSMUSG00000007880.16, intron 1 of 19) protein_coding-intron (ENSMUSG00000007880.16, intron 1 of 19) -19815 ENSMUSG00000007880.16 ENSMUSG00000007880 ENSMUST00000139709 Arid1a protein_coding Interval_136783 chr6 60203620 60204302 + 0 NA Intergenic Intergenic -46831 ENSMUSG00000064515.1 ENSMUSG00000064515 ENSMUST00000082581 n-R5s162 rRNA Interval_68084 chr16 64899070 64899762 + 0 NA Intergenic Intergenic -11857 ENSMUSG00000097999.1 ENSMUSG00000097999 ENSMUST00000182707 Gm9061 processed_pseudogene Interval_34405 chr12 3889614 3892505 + 0 NA promoter-TSS (ENSMUSG00000020661.15) protein_coding-promoter-TSS (ENSMUSG00000020661.15) -28815 ENSMUSG00000073242.4 ENSMUSG00000073242 ENSMUST00000144896 Dnmt3aos antisense Interval_116765 chr4 117155536 117156579 + 0 NA promoter-TSS (ENSMUSG00000064751.1) snoRNA-promoter-TSS (ENSMUSG00000064751.1) 12 ENSMUSG00000047675.15 ENSMUSG00000047675 ENSMUST00000141219 Rps8 protein_coding Interval_49513 chr13 112573338 112574167 + 0 NA intron (ENSMUSG00000050377.8, intron 1 of 16) protein_coding-intron (ENSMUSG00000050377.8, intron 1 of 16) -8086 ENSMUSG00000050377.8 ENSMUSG00000050377 ENSMUST00000225397 Il31ra protein_coding Interval_122607 chr5 24172797 24173365 + 0 NA intron (ENSMUSG00000048439.15, intron 3 of 5) protein_coding-intron (ENSMUSG00000048439.15, intron 3 of 6) 5573 ENSMUSG00000048439.15 ENSMUSG00000048439 ENSMUST00000124150 Nupl2 protein_coding Interval_32467 chr11 107703391 107704094 + 0 NA exon (ENSMUSG00000020722.5, exon 4 of 4) protein_coding-exon (ENSMUSG00000020722.5, exon 4 of 4) 12780 ENSMUSG00000020722.5 ENSMUSG00000020722 ENSMUST00000021065 Cacng1 protein_coding Interval_63658 chr15 102619184 102620086 + 0 NA intron (ENSMUSG00000099083.7, intron 1 of 4) protein_coding-intron (ENSMUSG00000099083.7, intron 1 of 10) 5432 ENSMUSG00000052414.9 ENSMUSG00000052414 ENSMUST00000184772 Gm28047 protein_coding Interval_83766 chr19 4476350 4478545 + 0 NA promoter-TSS (ENSMUSG00000049303.10) protein_coding-promoter-TSS (ENSMUSG00000049303.10) -321 ENSMUSG00000049303.10 ENSMUSG00000049303 ENSMUST00000133222 Syt12 protein_coding Interval_112840 chr4 45456757 45457248 + 0 NA intron (ENSMUSG00000044813.15, intron 2 of 4) protein_coding-intron (ENSMUSG00000044813.15, intron 3 of 5) 25800 ENSMUSG00000044813.15 ENSMUSG00000044813 ENSMUST00000147448 Shb protein_coding Interval_158145 chr8 79183332 79183651 + 0 NA intron (ENSMUSG00000071064.15, intron 11 of 13) protein_coding-intron (ENSMUSG00000071064.15, intron 11 of 14) -42439 ENSMUSG00000110388.1 ENSMUSG00000110388 ENSMUST00000211572 Gm30329 antisense Interval_65054 chr16 18727351 18728238 + 0 NA Intergenic Intergenic -45578 ENSMUSG00000116825.1 ENSMUSG00000116825 ENSMUST00000231787 Rps2-ps7 processed_pseudogene Interval_160082 chr8 106258237 106258929 + 0 NA intron (ENSMUSG00000031906.9, intron 4 of 7) protein_coding-intron (ENSMUSG00000031906.9, intron 5 of 8) 22395 ENSMUSG00000031906.9 ENSMUSG00000031906 ENSMUST00000212896 Smpd3 protein_coding Interval_89429 chr2 20632100 20634830 + 0 NA intron (ENSMUSG00000036617.17, intron 1 of 2) protein_coding-intron (ENSMUSG00000036617.17, intron 3 of 18) 73661 ENSMUSG00000098575.1 ENSMUSG00000098575 ENSMUST00000183963 Gm27446 misc_RNA Interval_142386 chr6 141326608 141326779 + 0 NA intron (ENSMUSG00000041741.10, intron 1 of 5) protein_coding-intron (ENSMUSG00000041741.10, intron 1 of 15) -13860 ENSMUSG00000107456.1 ENSMUSG00000107456 ENSMUST00000203920 Gm10400 TEC Interval_7268 chr1 128330043 128330991 + 0 NA Intergenic Intergenic 15525 ENSMUSG00000026355.11 ENSMUSG00000026355 ENSMUST00000188755 Mcm6 protein_coding Interval_31410 chr11 100527096 100528616 + 0 NA promoter-TSS (ENSMUSG00000020917.17) protein_coding-promoter-TSS (ENSMUSG00000020917.17) -4258 ENSMUSG00000020917.17 ENSMUSG00000020917 ENSMUST00000107385 Acly protein_coding Interval_129032 chr5 116949917 116951141 + 0 NA Intergenic Intergenic -108283 ENSMUSG00000107327.1 ENSMUSG00000107327 ENSMUST00000201054 Gm7478 processed_pseudogene Interval_108364 chr3 125848756 125849180 + 0 NA Intergenic Intergenic 66917 ENSMUSG00000032854.12 ENSMUSG00000032854 ENSMUST00000196481 Ugt8a protein_coding Interval_47225 chr13 78255331 78255952 + 0 NA intron (ENSMUSG00000087143.9, intron 1 of 1) antisense-intron (ENSMUSG00000087143.9, intron 1 of 1) 18311 ENSMUSG00000114592.1 ENSMUSG00000114592 ENSMUST00000224369 Gm5042 processed_pseudogene Interval_113287 chr4 53126447 53126836 + 0 NA intron (ENSMUSG00000015243.4, intron 5 of 49) protein_coding-intron (ENSMUSG00000015243.4, intron 5 of 49) -85715 ENSMUSG00000015243.4 ENSMUSG00000015243 ENSMUST00000149127 Abca1 protein_coding Interval_132787 chr5 147869603 147870979 + 0 NA promoter-TSS (ENSMUSG00000029649.10) protein_coding-promoter-TSS (ENSMUSG00000029649.10) -1743 ENSMUSG00000107079.1 ENSMUSG00000107079 ENSMUST00000202304 Gm35648 processed_pseudogene Interval_108117 chr3 121614308 121615337 + 0 NA Intergenic Intergenic 28545 ENSMUSG00000044522.8 ENSMUSG00000044522 ENSMUST00000198402 A730020M07Rik lincRNA Interval_28405 chr11 75692354 75692777 + 0 NA exon (ENSMUSG00000017776.15, exon 2 of 3) protein_coding-exon (ENSMUSG00000017776.15, exon 2 of 3) 13023 ENSMUSG00000017776.15 ENSMUSG00000017776 ENSMUST00000147718 Crk protein_coding Interval_125434 chr5 67093965 67097880 + 0 NA exon (ENSMUSG00000012520.10, exon 3 of 3) protein_coding-exon (ENSMUSG00000012520.10, exon 3 of 3) 3135 ENSMUSG00000012520.10 ENSMUSG00000012520 ENSMUST00000174251 Phox2b protein_coding Interval_32666 chr11 109513111 109513794 + 0 NA intron (ENSMUSG00000020604.13, intron 2 of 11) protein_coding-intron (ENSMUSG00000020604.13, intron 4 of 13) -13628 ENSMUSG00000088106.1 ENSMUSG00000088106 ENSMUST00000157481 Gm22378 snRNA Interval_70153 chr17 5848217 5849729 + 0 NA intron (ENSMUSG00000002365.10, intron 1 of 17) protein_coding-intron (ENSMUSG00000002365.10, intron 1 of 17) 7621 ENSMUSG00000002365.10 ENSMUSG00000002365 ENSMUST00000231803 Snx9 protein_coding Interval_49611 chr13 113538141 113538649 + 0 NA intron (ENSMUSG00000114715.1, intron 2 of 5) lincRNA-intron (ENSMUSG00000114715.1, intron 2 of 5) 29372 ENSMUSG00000114715.1 ENSMUSG00000114715 ENSMUST00000225395 Gm34471 lincRNA Interval_143134 chr7 3584997 3586947 + 0 NA Intergenic Intergenic -3192 ENSMUSG00000095674.1 ENSMUSG00000095674 ENSMUST00000179750 Gm25100 miRNA Interval_150794 chr7 114672717 114672917 + 0 NA Intergenic Intergenic 26827 ENSMUSG00000108349.1 ENSMUSG00000108349 ENSMUST00000206729 Gm18599 processed_pseudogene Interval_155933 chr8 41107167 41107688 + 0 NA intron (ENSMUSG00000045636.16, intron 1 of 1) protein_coding-intron (ENSMUSG00000045636.16, intron 1 of 13) 54317 ENSMUSG00000085672.1 ENSMUSG00000085672 ENSMUST00000125903 Gm16193 antisense Interval_27719 chr11 69662236 69663252 + 0 NA promoter-TSS (ENSMUSG00000018761.14) protein_coding-promoter-TSS (ENSMUSG00000018761.14) -157 ENSMUSG00000018761.14 ENSMUSG00000018761 ENSMUST00000153217 Mpdu1 protein_coding Interval_83115 chr18 81510389 81511012 + 0 NA intron (ENSMUSG00000118300.1, intron 2 of 2) lincRNA-intron (ENSMUSG00000118300.1, intron 2 of 2) 30343 ENSMUSG00000118300.1 ENSMUSG00000118300 ENSMUST00000237597 Gm50412 lincRNA Interval_40152 chr12 102000866 102001874 + 0 NA intron (ENSMUSG00000041781.9, intron 13 of 14) protein_coding-intron (ENSMUSG00000041781.9, intron 13 of 14) -24302 ENSMUSG00000113902.1 ENSMUSG00000113902 ENSMUST00000222608 Ndufb1-ps protein_coding Interval_92387 chr2 59424485 59425079 + 0 NA Intergenic Intergenic -25001 ENSMUSG00000080982.1 ENSMUSG00000080982 ENSMUST00000118339 Gm13549 processed_pseudogene Interval_124148 chr5 38671299 38671473 + 0 NA exon (ENSMUSG00000046572.10, exon 4 of 4) protein_coding-exon (ENSMUSG00000046572.10, exon 4 of 4) 13440 ENSMUSG00000046572.10 ENSMUSG00000046572 ENSMUST00000178760 Zfp518b protein_coding Interval_136750 chr6 58999443 58999647 + 0 NA exon (ENSMUSG00000092323.1, exon 4 of 4) antisense-exon (ENSMUSG00000092323.1, exon 4 of 4) 24898 ENSMUSG00000037709.13 ENSMUSG00000037709 ENSMUST00000204616 Fam13a protein_coding Interval_155735 chr8 36579534 36579806 + 0 NA exon (ENSMUSG00000031523.16, exon 7 of 14) protein_coding-exon (ENSMUSG00000031523.16, exon 7 of 14) 90479 ENSMUSG00000039620.17 ENSMUSG00000039620 ENSMUST00000125492 Trmt9b protein_coding Interval_127530 chr5 104847326 104848047 + 0 NA intron (ENSMUSG00000072774.10, intron 1 of 1) protein_coding-intron (ENSMUSG00000072774.10, intron 1 of 4) 12107 ENSMUSG00000072774.10 ENSMUSG00000072774 ENSMUST00000191135 Zfp951 protein_coding Interval_793 chr1 11350898 11351711 + 0 NA Intergenic Intergenic 15660 ENSMUSG00000103494.1 ENSMUSG00000103494 ENSMUST00000193623 Gm37410 TEC Interval_21836 chr11 4660887 4662750 + 0 NA intron (ENSMUSG00000020412.16, intron 8 of 18) protein_coding-intron (ENSMUSG00000020412.16, intron 8 of 19) 24071 ENSMUSG00000020412.16 ENSMUSG00000020412 ENSMUST00000109930 Ascc2 protein_coding Interval_171268 chr9 115844822 115845654 + 0 NA Intergenic Intergenic -91904 ENSMUSG00000056880.12 ENSMUSG00000056880 ENSMUST00000121770 Gadl1 protein_coding Interval_54595 chr14 70947311 70947608 + 0 NA intron (ENSMUSG00000022103.10, intron 1 of 6) protein_coding-intron (ENSMUSG00000022103.10, intron 4 of 8) 56931 ENSMUSG00000022103.10 ENSMUSG00000022103 ENSMUST00000227633 Gfra2 protein_coding Interval_120641 chr4 149838656 149838920 + 0 NA Intergenic Intergenic 21024 ENSMUSG00000106221.1 ENSMUSG00000106221 ENSMUST00000199807 Gm47301 miRNA Interval_99404 chr2 160669244 160669553 + 0 NA promoter-TSS (ENSMUSG00000070544.6) protein_coding-promoter-TSS (ENSMUSG00000070544.6) -16271 ENSMUSG00000070544.6 ENSMUSG00000070544 ENSMUST00000150039 Top1 protein_coding Interval_34646 chr12 8326590 8327352 + 0 NA intron (ENSMUSG00000020605.9, intron 4 of 6) protein_coding-intron (ENSMUSG00000020605.9, intron 4 of 6) 9360 ENSMUSG00000020605.9 ENSMUSG00000020605 ENSMUST00000220300 Hs1bp3 protein_coding Interval_142777 chr6 145557272 145558635 + 0 NA intron (ENSMUSG00000054966.13, intron 1 of 10) protein_coding-intron (ENSMUSG00000054966.13, intron 1 of 1) -57804 ENSMUSG00000067338.6 ENSMUSG00000067338 ENSMUST00000087445 Tuba3b protein_coding Interval_38264 chr12 76792494 76792880 + 0 NA exon (ENSMUSG00000042808.8, exon 2 of 2) protein_coding-exon (ENSMUSG00000042808.8, exon 2 of 2) 2810 ENSMUSG00000042808.8 ENSMUSG00000042808 ENSMUST00000220569 Gpx2 protein_coding Interval_151264 chr7 120451235 120451579 + 0 NA intron (ENSMUSG00000051900.12, intron 9 of 30) protein_coding-intron (ENSMUSG00000051900.12, intron 9 of 30) -24015 ENSMUSG00000051900.12 ENSMUSG00000051900 ENSMUST00000153845 Abca16 protein_coding Interval_35773 chr12 29232752 29233198 + 0 NA Intergenic Intergenic 84593 ENSMUSG00000112776.1 ENSMUSG00000112776 ENSMUST00000218409 Gm6989 processed_pseudogene Interval_11209 chr1 180182023 180182586 + 0 NA promoter-TSS (ENSMUSG00000026489.13) protein_coding-promoter-TSS (ENSMUSG00000026489.13) 11181 ENSMUSG00000026489.13 ENSMUSG00000026489 ENSMUST00000161746 Coq8a protein_coding Interval_112635 chr4 43720744 43721508 + 0 NA Intergenic Intergenic -6062 ENSMUSG00000071001.4 ENSMUSG00000071001 ENSMUST00000095109 Hrct1 protein_coding Interval_90161 chr2 28639950 28641918 + 0 NA promoter-TSS (ENSMUSG00000026812.16) protein_coding-promoter-TSS (ENSMUSG00000026812.16) -294 ENSMUSG00000026812.16 ENSMUSG00000026812 ENSMUST00000139642 Tsc1 protein_coding Interval_13977 chr10 25232339 25233063 + 0 NA intron (ENSMUSG00000039166.16, intron 6 of 7) protein_coding-intron (ENSMUSG00000039166.16, intron 6 of 7) -12010 ENSMUSG00000039166.16 ENSMUSG00000039166 ENSMUST00000176231 Akap7 protein_coding Interval_149681 chr7 100607001 100608660 + 0 NA promoter-TSS (ENSMUSG00000030706.17) protein_coding-promoter-TSS (ENSMUSG00000030706.17) -16688 ENSMUSG00000082210.1 ENSMUSG00000082210 ENSMUST00000117374 Gm14382 processed_pseudogene Interval_84697 chr19 15453110 15453328 + 0 NA Intergenic Intergenic -226785 ENSMUSG00000094850.1 ENSMUSG00000094850 ENSMUST00000083389 Gm24319 snRNA Interval_475 chr1 6134946 6135794 + 0 NA Intergenic Intergenic 79923 ENSMUSG00000090031.2 ENSMUSG00000090031 ENSMUST00000097832 4732440D04Rik antisense Interval_132836 chr5 148239282 148239981 + 0 NA TTS (ENSMUSG00000029651.16) protein_coding-TTS (ENSMUSG00000029651.16) 3639 ENSMUSG00000029651.16 ENSMUSG00000029651 ENSMUST00000085554 Mtus2 protein_coding Interval_361 chr1 4559513 4559886 + 0 NA Intergenic Intergenic -24413 ENSMUSG00000103003.1 ENSMUSG00000103003 ENSMUST00000193889 Gm38076 processed_pseudogene Interval_87246 chr19 47165986 47167044 + 0 NA Intergenic Intergenic 4619 ENSMUSG00000091230.1 ENSMUSG00000091230 ENSMUST00000169692 H1f11-ps processed_pseudogene Interval_40645 chr12 106302604 106303037 + 0 NA Intergenic Intergenic -24548 ENSMUSG00000091280.1 ENSMUSG00000091280 ENSMUST00000164367 Gm17032 lincRNA Interval_79376 chr18 31433397 31433617 + 0 NA Intergenic Intergenic -6811 ENSMUSG00000096934.1 ENSMUSG00000096934 ENSMUST00000181067 Gm26658 antisense Interval_154635 chr8 22180241 22180458 + 0 NA intron (ENSMUSG00000037725.8, intron 1 of 8) protein_coding-intron (ENSMUSG00000037725.8, intron 1 of 8) -10180 ENSMUSG00000037725.8 ENSMUSG00000037725 ENSMUST00000211045 Ckap2 protein_coding Interval_93934 chr2 79554915 79555150 + 0 NA Intergenic Intergenic -84150 ENSMUSG00000027007.16 ENSMUSG00000027007 ENSMUST00000133266 Itprid2 protein_coding Interval_13278 chr10 14016416 14018882 + 0 NA intron (ENSMUSG00000015501.10, intron 2 of 3) protein_coding-intron (ENSMUSG00000015501.10, intron 1 of 8) 50625 ENSMUSG00000015501.10 ENSMUSG00000015501 ENSMUST00000191464 Hivep2 protein_coding Interval_111085 chr4 11768744 11770298 + 0 NA intron (ENSMUSG00000028217.11, intron 2 of 14) protein_coding-intron (ENSMUSG00000028217.11, intron 2 of 17) 11328 ENSMUSG00000028217.11 ENSMUSG00000028217 ENSMUST00000108303 Cdh17 protein_coding Interval_63354 chr15 100512368 100512839 + 0 NA promoter-TSS (ENSMUSG00000009733.9) protein_coding-promoter-TSS (ENSMUSG00000009733.9) -359 ENSMUSG00000009733.9 ENSMUSG00000009733 ENSMUST00000231138 Tfcp2 protein_coding Interval_108824 chr3 132017656 132018085 + 0 NA intron (ENSMUSG00000105331.1, intron 3 of 3) lincRNA-intron (ENSMUSG00000105331.1, intron 3 of 3) 64522 ENSMUSG00000064992.1 ENSMUSG00000064992 ENSMUST00000083058 Gm22421 snRNA Interval_128133 chr5 111207906 111208978 + 0 NA intron (ENSMUSG00000033209.17, intron 6 of 22) protein_coding-intron (ENSMUSG00000033209.17, intron 7 of 23) 11302 ENSMUSG00000105027.1 ENSMUSG00000105027 ENSMUST00000197532 Gm43676 TEC Interval_2268 chr1 37554233 37554628 + 0 NA Intergenic Intergenic -18179 ENSMUSG00000026110.15 ENSMUSG00000026110 ENSMUST00000195598 Mgat4a protein_coding Interval_35529 chr12 24535833 24536080 + 0 NA intron (ENSMUSG00000059669.8, intron 8 of 11) protein_coding-intron (ENSMUSG00000059669.8, intron 8 of 14) -23117 ENSMUSG00000113692.1 ENSMUSG00000113692 ENSMUST00000220562 Gm47482 processed_pseudogene Interval_103637 chr3 51334165 51334403 + 0 NA intron (ENSMUSG00000037174.18, intron 1 of 9) protein_coding-intron (ENSMUSG00000037174.18, intron 1 of 9) -31381 ENSMUSG00000104200.1 ENSMUSG00000104200 ENSMUST00000195224 Gm37399 TEC Interval_65002 chr16 17785166 17785601 + 0 NA intron (ENSMUSG00000022750.18, intron 5 of 6) protein_coding-intron (ENSMUSG00000022750.18, intron 5 of 6) -11932 ENSMUSG00000012017.4 ENSMUSG00000012017 ENSMUST00000231301 Scarf2 protein_coding Interval_13726 chr10 21454521 21455410 + 0 NA Intergenic Intergenic -9329 ENSMUSG00000112738.1 ENSMUSG00000112738 ENSMUST00000219604 Gm48386 processed_pseudogene Interval_25251 chr11 45893390 45893884 + 0 NA intron (ENSMUSG00000006169.20, intron 5 of 7) protein_coding-intron (ENSMUSG00000006169.20, intron 6 of 11) 11240 ENSMUSG00000006169.20 ENSMUSG00000006169 ENSMUST00000133715 Clint1 protein_coding Interval_115734 chr4 103152221 103152389 + 0 NA intron (ENSMUSG00000028522.16, intron 12 of 14) protein_coding-intron (ENSMUSG00000028522.16, intron 11 of 13) 32915 ENSMUSG00000028522.16 ENSMUSG00000028522 ENSMUST00000128536 Mier1 protein_coding Interval_85139 chr19 23121701 23122707 + 0 NA Intergenic Intergenic -12696 ENSMUSG00000044387.5 ENSMUSG00000044387 ENSMUST00000142712 2410080I02Rik lincRNA Interval_107833 chr3 115997998 115998684 + 0 NA intron (ENSMUSG00000054414.4, intron 2 of 10) protein_coding-intron (ENSMUSG00000054414.4, intron 2 of 10) -9487 ENSMUSG00000027963.14 ENSMUSG00000027963 ENSMUST00000106502 Extl2 protein_coding Interval_64283 chr16 10223998 10224361 + 0 NA intron (ENSMUSG00000039200.16, intron 1 of 5) protein_coding-intron (ENSMUSG00000039200.16, intron 6 of 10) 3345 ENSMUSG00000115943.1 ENSMUSG00000115943 ENSMUST00000230210 Gm49455 antisense Interval_31698 chr11 102316379 102320779 + 0 NA promoter-TSS (ENSMUSG00000020923.17) protein_coding-promoter-TSS (ENSMUSG00000020923.17) 517 ENSMUSG00000020923.17 ENSMUSG00000020923 ENSMUST00000128016 Ubtf protein_coding Interval_24725 chr11 36263871 36265291 + 0 NA intron (ENSMUSG00000049336.16, intron 5 of 28) protein_coding-intron (ENSMUSG00000049336.16, intron 5 of 28) -13460 ENSMUSG00000086375.1 ENSMUSG00000086375 ENSMUST00000123278 Gm12127 antisense Interval_38238 chr12 76577999 76578629 + 0 NA exon (ENSMUSG00000052609.9, exon 19 of 19) protein_coding-exon (ENSMUSG00000052609.9, exon 19 of 19) 5772 ENSMUSG00000021061.15 ENSMUSG00000021061 ENSMUST00000166101 Sptb protein_coding Interval_90930 chr2 33552684 33553438 + 0 NA Intergenic Intergenic -61337 ENSMUSG00000104403.1 ENSMUSG00000104403 ENSMUST00000193312 Gm38011 TEC Interval_116899 chr4 118074171 118074678 + 0 NA intron (ENSMUSG00000028538.12, intron 2 of 11) protein_coding-intron (ENSMUSG00000028538.12, intron 2 of 11) -42542 ENSMUSG00000028538.12 ENSMUSG00000028538 ENSMUST00000126336 St3gal3 protein_coding Interval_101553 chr3 5575644 5576728 + 0 NA promoter-TSS (ENSMUSG00000040374.13) protein_coding-promoter-TSS (ENSMUSG00000040374.13) -41 ENSMUSG00000040374.13 ENSMUSG00000040374 ENSMUST00000071280 Pex2 protein_coding Interval_22211 chr11 7188285 7189253 + 0 NA promoter-TSS (ENSMUSG00000087512.2) protein_coding-promoter-TSS (ENSMUSG00000087512.2) -200 ENSMUSG00000087512.2 ENSMUSG00000087512 ENSMUST00000122910 Ccdc201 protein_coding Interval_119815 chr4 140173810 140174013 + 0 NA intron (ENSMUSG00000040972.8, intron 1 of 9) protein_coding-intron (ENSMUSG00000040972.8, intron 1 of 9) 31038 ENSMUSG00000086164.1 ENSMUSG00000086164 ENSMUST00000137283 Gm13029 antisense Interval_64910 chr16 17146746 17148663 + 0 NA promoter-TSS (ENSMUSG00000022768.17) protein_coding-promoter-TSS (ENSMUSG00000022768.17) 767 ENSMUSG00000041774.16 ENSMUSG00000041774 ENSMUST00000231539 Ydjc protein_coding Interval_173093 chrX 71492232 71493485 + 0 NA promoter-TSS (ENSMUSG00000035776.14) protein_coding-promoter-TSS (ENSMUSG00000035776.14) -253 ENSMUSG00000035776.14 ENSMUSG00000035776 ENSMUST00000148177 Cd99l2 protein_coding Interval_169735 chr9 100766270 100766486 + 0 NA intron (ENSMUSG00000037286.15, intron 5 of 8) protein_coding-intron (ENSMUSG00000037286.15, intron 5 of 8) 63165 ENSMUSG00000104272.1 ENSMUSG00000104272 ENSMUST00000195122 Gm38297 TEC Interval_5243 chr1 86703318 86704345 + 0 NA promoter-TSS (ENSMUSG00000053333.15) protein_coding-promoter-TSS (ENSMUSG00000053333.15) 3 ENSMUSG00000053333.15 ENSMUSG00000053333 ENSMUST00000186682 Dis3l2 protein_coding Interval_40568 chr12 105790037 105790563 + 0 NA intron (ENSMUSG00000021111.15, intron 1 of 6) protein_coding-intron (ENSMUSG00000021111.15, intron 1 of 22) -38767 ENSMUSG00000021111.15 ENSMUSG00000021111 ENSMUST00000172089 Papola protein_coding Interval_50314 chr14 11801605 11802066 + 0 NA intron (ENSMUSG00000021745.14, intron 2 of 3) protein_coding-intron (ENSMUSG00000021745.14, intron 2 of 29) 33892 ENSMUSG00000114310.1 ENSMUSG00000114310 ENSMUST00000225152 Gm48602 TEC Interval_26945 chr11 61749502 61749903 + 0 NA intron (ENSMUSG00000020528.14, intron 4 of 10) protein_coding-intron (ENSMUSG00000020528.14, intron 5 of 11) 12386 ENSMUSG00000020528.14 ENSMUSG00000020528 ENSMUST00000123575 Prpsap2 protein_coding Interval_169878 chr9 102698351 102698623 + 0 NA exon (ENSMUSG00000102200.1, exon 1 of 1) TEC-exon (ENSMUSG00000102200.1, exon 1 of 1) 2515 ENSMUSG00000102200.1 ENSMUSG00000102200 ENSMUST00000192982 Gm36957 TEC Interval_109413 chr3 142039016 142039300 + 0 NA intron (ENSMUSG00000052430.15, intron 1 of 11) protein_coding-intron (ENSMUSG00000052430.15, intron 2 of 11) -107650 ENSMUSG00000052430.15 ENSMUSG00000052430 ENSMUST00000106230 Bmpr1b protein_coding Interval_147608 chr7 69490653 69491204 + 0 NA promoter-TSS (ENSMUSG00000109153.1) lincRNA-promoter-TSS (ENSMUSG00000109153.1) -127 ENSMUSG00000109153.1 ENSMUSG00000109153 ENSMUST00000207361 Gm38584 lincRNA Interval_45290 chr13 54071662 54072486 + 0 NA intron (ENSMUSG00000021474.9, intron 1 of 10) protein_coding-intron (ENSMUSG00000021474.9, intron 1 of 10) -13872 ENSMUSG00000021474.9 ENSMUSG00000021474 ENSMUST00000222285 Sfxn1 protein_coding Interval_101971 chr3 13878378 13879384 + 0 NA intron (ENSMUSG00000039717.16, intron 2 of 5) protein_coding-intron (ENSMUSG00000039717.16, intron 2 of 8) 33195 ENSMUSG00000088546.1 ENSMUSG00000088546 ENSMUST00000157921 Gm25981 misc_RNA Interval_26443 chr11 57886029 57886300 + 0 NA Intergenic Intergenic 5268 ENSMUSG00000084223.1 ENSMUSG00000084223 ENSMUST00000119500 Gm12244 processed_pseudogene Interval_130465 chr5 127909417 127909606 + 0 NA intron (ENSMUSG00000034310.8, intron 4 of 8) protein_coding-intron (ENSMUSG00000034310.8, intron 4 of 8) 30980 ENSMUSG00000085328.2 ENSMUSG00000085328 ENSMUST00000164420 Gm17131 unprocessed_pseudogene Interval_63745 chr15 103209989 103210662 + 0 NA intron (ENSMUSG00000009575.14, intron 3 of 5) protein_coding-intron (ENSMUSG00000009575.14, intron 2 of 4) 5041 ENSMUSG00000009575.14 ENSMUSG00000009575 ENSMUST00000127191 Cbx5 protein_coding Interval_80934 chr18 50553506 50554024 + 0 NA Intergenic Intergenic 47654 ENSMUSG00000048875.3 ENSMUSG00000048875 ENSMUST00000056460 Pudp protein_coding Interval_119993 chr4 141279414 141279661 + 0 NA exon (ENSMUSG00000085395.1, exon 2 of 2) lincRNA-exon (ENSMUSG00000085395.1, exon 2 of 2) 1098 ENSMUSG00000085395.1 ENSMUSG00000085395 ENSMUST00000142429 Gm13056 lincRNA Interval_107691 chr3 111135412 111136227 + 0 NA Intergenic Intergenic 27319 ENSMUSG00000106487.1 ENSMUSG00000106487 ENSMUST00000199816 Gm43407 processed_pseudogene Interval_150547 chr7 112266056 112266289 + 0 NA intron (ENSMUSG00000038244.14, intron 2 of 17) protein_coding-intron (ENSMUSG00000038244.14, intron 2 of 19) -83222 ENSMUSG00000038244.14 ENSMUSG00000038244 ENSMUST00000140202 Mical2 protein_coding Interval_168321 chr9 78661091 78661650 + 0 NA intron (ENSMUSG00000046186.8, intron 9 of 32) protein_coding-intron (ENSMUSG00000046186.8, intron 9 of 32) -31242 ENSMUSG00000091147.1 ENSMUSG00000091147 ENSMUST00000171278 4921509A06Rik antisense Interval_51758 chr14 32022036 32023250 + 0 NA promoter-TSS (ENSMUSG00000088487.1) misc_RNA-promoter-TSS (ENSMUSG00000088487.1) -701 ENSMUSG00000088487.1 ENSMUSG00000088487 ENSMUST00000157862 Gm26045 misc_RNA Interval_37584 chr12 70070927 70071187 + 0 NA intron (ENSMUSG00000021068.17, intron 5 of 30) protein_coding-intron (ENSMUSG00000021068.17, intron 5 of 29) 19560 ENSMUSG00000021068.17 ENSMUSG00000021068 ENSMUST00000239242 Nin protein_coding Interval_42349 chr13 12272981 12273902 + 0 NA intron (ENSMUSG00000052374.16, intron 19 of 21) protein_coding-intron (ENSMUSG00000052374.16, intron 18 of 20) 655 ENSMUSG00000052374.16 ENSMUSG00000052374 ENSMUST00000110616 Actn2 protein_coding Interval_86525 chr19 41384359 41385897 + 0 NA promoter-TSS (ENSMUSG00000025017.10) protein_coding-promoter-TSS (ENSMUSG00000025017.10) -26 ENSMUSG00000025017.10 ENSMUSG00000025017 ENSMUST00000235978 Pik3ap1 protein_coding Interval_66340 chr16 33244115 33244710 + 0 NA Intergenic Intergenic -7030 ENSMUSG00000022808.5 ENSMUSG00000022808 ENSMUST00000231242 Snx4 protein_coding Interval_165990 chr9 55241815 55242644 + 0 NA intron (ENSMUSG00000032311.17, intron 2 of 2) protein_coding-intron (ENSMUSG00000032311.17, intron 3 of 3) 33243 ENSMUSG00000032309.15 ENSMUSG00000032309 ENSMUST00000133795 Fbxo22 protein_coding Interval_98028 chr2 146910932 146911724 + 0 NA intron (ENSMUSG00000074749.10, intron 6 of 13) protein_coding-intron (ENSMUSG00000074749.10, intron 6 of 13) 55419 ENSMUSG00000074749.10 ENSMUSG00000074749 ENSMUST00000135595 Kiz protein_coding Interval_125304 chr5 66077165 66077559 + 0 NA intron (ENSMUSG00000070780.11, intron 1 of 3) protein_coding-intron (ENSMUSG00000070780.11, intron 2 of 5) -4467 ENSMUSG00000107304.1 ENSMUSG00000107304 ENSMUST00000201019 Gm43775 TEC Interval_4221 chr1 71691751 71692976 + 0 NA Intergenic Intergenic 17692 ENSMUSG00000101834.1 ENSMUSG00000101834 ENSMUST00000191383 Gm5829 processed_pseudogene Interval_4886 chr1 81498314 81498876 + 0 NA Intergenic Intergenic 23746 ENSMUSG00000104029.1 ENSMUSG00000104029 ENSMUST00000192484 Gm37210 TEC Interval_11381 chr1 181403991 181404207 + 0 NA intron (ENSMUSG00000026514.14, intron 1 of 5) protein_coding-intron (ENSMUSG00000026514.14, intron 1 of 5) -3343 ENSMUSG00000089888.1 ENSMUSG00000089888 ENSMUST00000159474 Gm16547 processed_pseudogene Interval_22940 chr11 17678683 17679083 + 0 NA Intergenic Intergenic -39700 ENSMUSG00000082411.1 ENSMUSG00000082411 ENSMUST00000119079 Gm12016 processed_pseudogene Interval_113482 chr4 55294271 55294908 + 0 NA Intergenic Intergenic 5256 ENSMUSG00000077403.2 ENSMUSG00000077403 ENSMUST00000104215 Gm25419 snoRNA Interval_104740 chr3 69960157 69960348 + 0 NA Intergenic Intergenic 2193 ENSMUSG00000077366.1 ENSMUSG00000077366 ENSMUST00000104178 Gm23484 snoRNA Interval_101768 chr3 9478605 9478835 + 0 NA intron (ENSMUSG00000040209.12, intron 1 of 9) protein_coding-intron (ENSMUSG00000040209.12, intron 2 of 8) -17448 ENSMUSG00000103485.1 ENSMUSG00000103485 ENSMUST00000192900 Gm38001 TEC Interval_168648 chr9 85344160 85344358 + 0 NA promoter-TSS (ENSMUSG00000103368.1) TEC-promoter-TSS (ENSMUSG00000103368.1) 92 ENSMUSG00000103368.1 ENSMUSG00000103368 ENSMUST00000192504 Gm36927 TEC Interval_11257 chr1 180510537 180511093 + 0 NA intron (ENSMUSG00000102608.1, intron 2 of 3) lincRNA-intron (ENSMUSG00000102608.1, intron 2 of 3) 8912 ENSMUSG00000102608.1 ENSMUSG00000102608 ENSMUST00000194222 Gm37267 lincRNA Interval_5402 chr1 88526243 88526745 + 0 NA Intergenic Intergenic -16428 ENSMUSG00000062310.7 ENSMUSG00000062310 ENSMUST00000067625 Glrp1 protein_coding Interval_166602 chr9 61259297 61260209 + 0 NA exon (ENSMUSG00000111658.1, exon 5 of 5) lincRNA-exon (ENSMUSG00000111658.1, exon 5 of 5) 34056 ENSMUSG00000111658.1 ENSMUSG00000111658 ENSMUST00000213377 B930092H01Rik lincRNA Interval_93295 chr2 71737284 71738501 + 0 NA promoter-TSS (ENSMUSG00000087570.1) lincRNA-promoter-TSS (ENSMUSG00000087570.1) 77 ENSMUSG00000087570.1 ENSMUSG00000087570 ENSMUST00000154654 Gm13647 lincRNA Interval_151120 chr7 118685113 118685463 + 0 NA Intergenic Intergenic -3257 ENSMUSG00000109357.1 ENSMUSG00000109357 ENSMUST00000208632 Gm45236 TEC Interval_73992 chr17 45905813 45906909 + 0 NA Intergenic Intergenic 21015 ENSMUSG00000117048.1 ENSMUSG00000117048 ENSMUST00000233085 Gm41584 lincRNA Interval_12388 chr1 192846861 192847729 + 0 NA intron (ENSMUSG00000016262.14, intron 3 of 3) protein_coding-intron (ENSMUSG00000016262.14, intron 3 of 3) 5634 ENSMUSG00000100872.2 ENSMUSG00000100872 ENSMUST00000188648 1700065J18Rik lincRNA Interval_72310 chr17 29093355 29095851 + 0 NA promoter-TSS (ENSMUSG00000117050.1) TEC-promoter-TSS (ENSMUSG00000117050.1) -142 ENSMUSG00000117050.1 ENSMUSG00000117050 ENSMUST00000233069 1700023B13Rik TEC Interval_14123 chr10 27781491 27781919 + 0 NA intron (ENSMUSG00000112206.1, intron 2 of 2) lincRNA-intron (ENSMUSG00000112206.1, intron 2 of 2) 2938 ENSMUSG00000112786.1 ENSMUSG00000112786 ENSMUST00000217988 Gm47696 processed_pseudogene Interval_70055 chr17 5036496 5036755 + 0 NA intron (ENSMUSG00000069729.14, intron 1 of 19) protein_coding-intron (ENSMUSG00000069729.14, intron 1 of 18) 41686 ENSMUSG00000069729.14 ENSMUSG00000069729 ENSMUST00000146703 Arid1b protein_coding Interval_150871 chr7 116084529 116084731 + 0 NA promoter-TSS (ENSMUSG00000091900.3) processed_pseudogene-promoter-TSS (ENSMUSG00000091900.3) -72 ENSMUSG00000091900.3 ENSMUSG00000091900 ENSMUST00000111755 Gm4353 processed_pseudogene Interval_49090 chr13 107902724 107903763 + 0 NA Intergenic Intergenic -13179 ENSMUSG00000032846.10 ENSMUSG00000032846 ENSMUST00000224719 Zswim6 protein_coding Interval_51576 chr14 30456364 30456578 + 0 NA intron (ENSMUSG00000015968.18, intron 1 of 1) protein_coding-intron (ENSMUSG00000015968.18, intron 1 of 46) 33201 ENSMUSG00000114966.1 ENSMUSG00000114966 ENSMUST00000224520 Gm18681 processed_pseudogene Interval_160678 chr8 111548099 111548760 + 0 NA intron (ENSMUSG00000033545.14, intron 1 of 3) protein_coding-intron (ENSMUSG00000033545.14, intron 1 of 3) 10851 ENSMUSG00000033545.14 ENSMUSG00000033545 ENSMUST00000173819 Znrf1 protein_coding Interval_16274 chr10 61851130 61851879 + 0 NA promoter-TSS (ENSMUSG00000058806.15) protein_coding-promoter-TSS (ENSMUSG00000058806.15) -2293 ENSMUSG00000058806.15 ENSMUSG00000058806 ENSMUST00000153120 Col13a1 protein_coding Interval_35457 chr12 22690701 22692031 + 0 NA Intergenic Intergenic 7521 ENSMUSG00000113413.1 ENSMUSG00000113413 ENSMUST00000221121 Gm21941 unprocessed_pseudogene Interval_63673 chr15 102708031 102708781 + 0 NA TTS (ENSMUSG00000023055.10) protein_coding-TTS (ENSMUSG00000023055.10) 1654 ENSMUSG00000023055.10 ENSMUSG00000023055 ENSMUST00000230374 Calcoco1 protein_coding Interval_60813 chr15 76910909 76911899 + 0 NA TTS (ENSMUSG00000054967.7) protein_coding-TTS (ENSMUSG00000054967.7) 7101 ENSMUSG00000003970.9 ENSMUSG00000003970 ENSMUST00000229591 Rpl8 protein_coding Interval_152933 chr7 139877415 139877838 + 0 NA exon (ENSMUSG00000025475.17, exon 8 of 8) protein_coding-exon (ENSMUSG00000025475.17, exon 8 of 8) 10725 ENSMUSG00000109710.1 ENSMUSG00000109710 ENSMUST00000209974 Gm4974 processed_pseudogene Interval_8449 chr1 139473208 139473674 + 0 NA intron (ENSMUSG00000033952.14, intron 13 of 26) protein_coding-intron (ENSMUSG00000033952.14, intron 13 of 27) 18669 ENSMUSG00000033952.14 ENSMUSG00000033952 ENSMUST00000196272 Aspm protein_coding Interval_148916 chr7 90028857 90029917 + 0 NA intron (ENSMUSG00000097585.2, intron 1 of 5) processed_transcript-intron (ENSMUSG00000097585.2, intron 7 of 8) 227 ENSMUSG00000097585.2 ENSMUSG00000097585 ENSMUST00000208266 E230029C05Rik processed_transcript Interval_167288 chr9 67048204 67050300 + 0 NA promoter-TSS (ENSMUSG00000032366.15) protein_coding-promoter-TSS (ENSMUSG00000032366.15) -16427 ENSMUSG00000032366.15 ENSMUSG00000032366 ENSMUST00000131279 Tpm1 protein_coding Interval_98519 chr2 152942034 152943937 + 0 NA exon (ENSMUSG00000042662.16, exon 7 of 7) protein_coding-exon (ENSMUSG00000042662.16, exon 7 of 7) 1571 ENSMUSG00000042662.16 ENSMUSG00000042662 ENSMUST00000109811 Dusp15 protein_coding Interval_26535 chr11 58606685 58606883 + 0 NA Intergenic Intergenic 6701 ENSMUSG00000037145.14 ENSMUSG00000037145 ENSMUST00000126695 2210407C18Rik protein_coding Interval_12968 chr10 8819618 8820549 + 0 NA intron (ENSMUSG00000015305.6, intron 2 of 3) protein_coding-intron (ENSMUSG00000015305.6, intron 2 of 19) 4064 ENSMUSG00000065692.1 ENSMUSG00000065692 ENSMUST00000083758 Gm25410 snoRNA Interval_110025 chr3 152576878 152577279 + 0 NA intron (ENSMUSG00000039058.11, intron 6 of 13) protein_coding-intron (ENSMUSG00000039058.11, intron 6 of 13) -50326 ENSMUSG00000039058.11 ENSMUSG00000039058 ENSMUST00000198552 Ak5 protein_coding Interval_61247 chr15 80211115 80212593 + 0 NA exon (ENSMUSG00000042428.6, exon 2 of 2) protein_coding-exon (ENSMUSG00000042428.6, exon 2 of 2) 16560 ENSMUSG00000115962.1 ENSMUSG00000115962 ENSMUST00000231034 4930588D02Rik TEC Interval_115349 chr4 97751007 97752171 + 0 NA intron (ENSMUSG00000048747.14, intron 1 of 5) protein_coding-intron (ENSMUSG00000048747.14, intron 1 of 5) 5800 ENSMUSG00000085710.1 ENSMUSG00000085710 ENSMUST00000149078 Gm12676 processed_transcript Interval_58889 chr15 39747068 39747832 + 0 NA intron (ENSMUSG00000022303.9, intron 1 of 2) protein_coding-intron (ENSMUSG00000022303.9, intron 1 of 3) 1516 ENSMUSG00000022303.9 ENSMUSG00000022303 ENSMUST00000227792 Dcstamp protein_coding Interval_7800 chr1 133771810 133772093 + 0 NA intron (ENSMUSG00000026463.17, intron 1 of 20) protein_coding-intron (ENSMUSG00000026463.17, intron 2 of 2) 6470 ENSMUSG00000102509.1 ENSMUSG00000102509 ENSMUST00000193173 Gm37368 TEC Interval_137335 chr6 71433787 71434045 + 0 NA exon (ENSMUSG00000108211.1, exon 1 of 1) TEC-exon (ENSMUSG00000108211.1, exon 1 of 1) 1191 ENSMUSG00000108211.1 ENSMUSG00000108211 ENSMUST00000205157 Gm44130 TEC Interval_51066 chr14 21903732 21903951 + 0 NA Intergenic Intergenic -14075 ENSMUSG00000114352.1 ENSMUSG00000114352 ENSMUST00000224374 4931407E12Rik lincRNA Interval_67449 chr16 48819884 48820233 + 0 NA Intergenic Intergenic 3202 ENSMUSG00000022650.7 ENSMUSG00000022650 ENSMUST00000023328 Retnlb protein_coding Interval_144511 chr7 25605530 25605997 + 0 NA Intergenic Intergenic 4437 ENSMUSG00000108304.1 ENSMUSG00000108304 ENSMUST00000206649 Gm4607 processed_pseudogene Interval_110457 chr3 158447356 158448547 + 0 NA intron (ENSMUSG00000028176.13, intron 2 of 26) protein_coding-intron (ENSMUSG00000028176.13, intron 2 of 27) -41040 ENSMUSG00000105683.1 ENSMUSG00000105683 ENSMUST00000200331 Gm43487 TEC Interval_75485 chr17 67219381 67220049 + 0 NA intron (ENSMUSG00000033278.10, intron 1 of 19) protein_coding-intron (ENSMUSG00000033278.10, intron 1 of 32) -193480 ENSMUSG00000093508.1 ENSMUSG00000093508 ENSMUST00000176783 Mir5709 miRNA Interval_97413 chr2 135928942 135929345 + 0 NA intron (ENSMUSG00000039943.16, intron 6 of 36) protein_coding-intron (ENSMUSG00000039943.16, intron 5 of 35) 97108 ENSMUSG00000064444.1 ENSMUSG00000064444 ENSMUST00000082510 Gm26227 snRNA Interval_165214 chr9 45390936 45392008 + 0 NA intron (ENSMUSG00000066705.7, intron 4 of 7) protein_coding-intron (ENSMUSG00000066705.7, intron 4 of 7) -15700 ENSMUSG00000059412.7 ENSMUSG00000059412 ENSMUST00000217549 Fxyd2 protein_coding Interval_80059 chr18 37019870 37022440 + 0 NA promoter-TSS (ENSMUSG00000073594.3) antisense-promoter-TSS (ENSMUSG00000073594.3) -476 ENSMUSG00000073594.3 ENSMUSG00000073594 ENSMUST00000097612 Gm10545 antisense Interval_83334 chr18 84305434 84305771 + 0 NA intron (ENSMUSG00000048410.17, intron 5 of 5) protein_coding-intron (ENSMUSG00000048410.17, intron 2 of 2) 70544 ENSMUSG00000102951.1 ENSMUSG00000102951 ENSMUST00000193817 Gm37216 TEC Interval_173423 chrX 93256495 93256736 + 0 NA Intergenic Intergenic 5141 ENSMUSG00000065266.1 ENSMUSG00000065266 ENSMUST00000083332 Gm23454 snoRNA Interval_74150 chr17 46811874 46814152 + 0 NA promoter-TSS (ENSMUSG00000036568.7) protein_coding-promoter-TSS (ENSMUSG00000036568.7) 19301 ENSMUSG00000036568.7 ENSMUSG00000036568 ENSMUST00000233455 Bicral protein_coding Interval_173812 chrX 104756311 104756756 + 0 NA Intergenic Intergenic 10051 ENSMUSG00000083049.1 ENSMUSG00000083049 ENSMUST00000122247 Gm14822 processed_pseudogene Interval_137324 chr6 71347948 71348613 + 0 NA Intergenic Intergenic -1051 ENSMUSG00000107959.1 ENSMUSG00000107959 ENSMUST00000204649 Gm44111 processed_pseudogene Interval_82976 chr18 80117653 80119193 + 0 NA exon (ENSMUSG00000056214.9, exon 3 of 3) protein_coding-exon (ENSMUSG00000056214.9, exon 3 of 3) -28461 ENSMUSG00000096597.1 ENSMUSG00000096597 ENSMUST00000178391 Gm21886 protein_coding Interval_148909 chr7 89975464 89976123 + 0 NA TTS (ENSMUSG00000030619.10) protein_coding-TTS (ENSMUSG00000030619.10) 5183 ENSMUSG00000030619.10 ENSMUSG00000030619 ENSMUST00000157001 Eed protein_coding Interval_15851 chr10 58381279 58381567 + 0 NA intron (ENSMUSG00000019920.18, intron 1 of 9) protein_coding-intron (ENSMUSG00000019920.18, intron 1 of 9) 9969 ENSMUSG00000019920.18 ENSMUSG00000019920 ENSMUST00000148799 Lims1 protein_coding Interval_141737 chr6 134134338 134134859 + 0 NA intron (ENSMUSG00000030199.16, intron 2 of 8) protein_coding-intron (ENSMUSG00000030199.16, intron 1 of 7) 37409 ENSMUSG00000091438.1 ENSMUSG00000091438 ENSMUST00000164616 Gm17088 antisense Interval_77286 chr17 87796787 87799148 + 0 NA promoter-TSS (ENSMUSG00000050138.8) protein_coding-promoter-TSS (ENSMUSG00000050138.8) 27 ENSMUSG00000050138.8 ENSMUSG00000050138 ENSMUST00000055221 Kcnk12 protein_coding Interval_33656 chr11 117765424 117765688 + 0 NA TTS (ENSMUSG00000025572.17) protein_coding-TTS (ENSMUSG00000025572.17) 16325 ENSMUSG00000025571.13 ENSMUSG00000025571 ENSMUST00000141287 Tnrc6c protein_coding Interval_5948 chr1 93444854 93446122 + 0 NA promoter-TSS (ENSMUSG00000034088.15) protein_coding-promoter-TSS (ENSMUSG00000034088.15) 194 ENSMUSG00000034088.15 ENSMUSG00000034088 ENSMUST00000188844 Hdlbp protein_coding Interval_38390 chr12 78566615 78566822 + 0 NA intron (ENSMUSG00000047454.12, intron 10 of 22) protein_coding-intron (ENSMUSG00000047454.12, intron 11 of 23) -115929 ENSMUSG00000047454.12 ENSMUSG00000047454 ENSMUST00000219629 Gphn protein_coding Interval_138023 chr6 84327301 84328377 + 0 NA Intergenic Intergenic 95999 ENSMUSG00000107797.1 ENSMUSG00000107797 ENSMUST00000203521 Gm10445 lincRNA Interval_56567 chr14 120388875 120389806 + 0 NA promoter-TSS (ENSMUSG00000097903.2) antisense-promoter-TSS (ENSMUSG00000097903.2) -355 ENSMUSG00000097903.2 ENSMUSG00000097903 ENSMUST00000181685 Gm26679 antisense Interval_3634 chr1 60137264 60138258 + 0 NA intron (ENSMUSG00000026017.13, intron 8 of 14) protein_coding-intron (ENSMUSG00000026017.13, intron 7 of 13) 20506 ENSMUSG00000082609.1 ENSMUSG00000082609 ENSMUST00000118718 Gm15464 processed_pseudogene Interval_83512 chr18 88634184 88634566 + 0 NA intron (ENSMUSG00000118352.1, intron 1 of 4) lincRNA-intron (ENSMUSG00000118352.1, intron 1 of 4) 24239 ENSMUSG00000118247.1 ENSMUSG00000118247 ENSMUST00000235328 Gm7662 processed_pseudogene Interval_1355 chr1 20933361 20935417 + 0 NA intron (ENSMUSG00000025931.15, intron 2 of 2) protein_coding-intron (ENSMUSG00000025931.15, intron 2 of 2) -11322 ENSMUSG00000100929.1 ENSMUSG00000100929 ENSMUST00000185639 Gm28064 processed_pseudogene Interval_73092 chr17 34735988 34736523 + 0 NA promoter-TSS (ENSMUSG00000073418.4) protein_coding-promoter-TSS (ENSMUSG00000073418.4) -6990 ENSMUSG00000073418.4 ENSMUSG00000073418 ENSMUST00000173057 C4b protein_coding Interval_48940 chr13 105238967 105240074 + 0 NA intron (ENSMUSG00000021720.11, intron 5 of 7) protein_coding-intron (ENSMUSG00000021720.11, intron 4 of 6) -16122 ENSMUSG00000077578.1 ENSMUSG00000077578 ENSMUST00000104390 Gm25631 snoRNA Interval_47402 chr13 83560092 83560368 + 0 NA intron (ENSMUSG00000005583.16, intron 1 of 3) protein_coding-intron (ENSMUSG00000005583.16, intron 2 of 10) 35939 ENSMUSG00000005583.16 ENSMUSG00000005583 ENSMUST00000197145 Mef2c protein_coding Interval_125583 chr5 72201675 72203806 + 0 NA promoter-TSS (ENSMUSG00000046808.17) polymorphic_pseudogene-promoter-TSS (ENSMUSG00000046808.17) -589 ENSMUSG00000046808.17 ENSMUSG00000046808 ENSMUST00000146393 Atp10d polymorphic_pseudogene Interval_40609 chr12 106012096 106012500 + 0 NA intron (ENSMUSG00000021115.15, intron 1 of 13) protein_coding-intron (ENSMUSG00000021115.15, intron 1 of 14) -13509 ENSMUSG00000021115.15 ENSMUSG00000021115 ENSMUST00000220629 Vrk1 protein_coding Interval_39945 chr12 100003172 100003478 + 0 NA intron (ENSMUSG00000045404.16, intron 2 of 2) protein_coding-intron (ENSMUSG00000045404.16, intron 2 of 2) -20473 ENSMUSG00000093352.1 ENSMUSG00000093352 ENSMUST00000175611 Gm23291 miRNA Interval_144953 chr7 29078760 29079923 + 0 NA intron (ENSMUSG00000030592.18, intron 39 of 108) protein_coding-intron (ENSMUSG00000030592.18, intron 38 of 105) 4353 ENSMUSG00000089219.1 ENSMUSG00000089219 ENSMUST00000158594 Mir1963 miRNA Interval_152269 chr7 131210240 131210445 + 0 NA promoter-TSS (ENSMUSG00000006204.7) protein_coding-promoter-TSS (ENSMUSG00000006204.7) 5410 ENSMUSG00000118585.1 ENSMUSG00000118585 ENSMUST00000239260 AC110885.1 unprocessed_pseudogene Interval_37973 chr12 73529214 73530163 + 0 NA Intergenic Intergenic 16704 ENSMUSG00000034435.6 ENSMUSG00000034435 ENSMUST00000042975 Tmem30b protein_coding Interval_35776 chr12 29258354 29258658 + 0 NA Intergenic Intergenic 59062 ENSMUSG00000112776.1 ENSMUSG00000112776 ENSMUST00000218409 Gm6989 processed_pseudogene Interval_151712 chr7 126212583 126213133 + 0 NA Intergenic Intergenic -25750 ENSMUSG00000000131.15 ENSMUSG00000000131 ENSMUST00000206784 Xpo6 protein_coding Interval_108520 chr3 127924691 127924941 + 0 NA intron (ENSMUSG00000104763.1, intron 1 of 4) lincRNA-intron (ENSMUSG00000104763.1, intron 1 of 4) 8644 ENSMUSG00000104763.1 ENSMUSG00000104763 ENSMUST00000198240 9830132P13Rik lincRNA Interval_134421 chr6 28525250 28526412 + 0 NA intron (ENSMUSG00000001424.14, intron 4 of 16) protein_coding-intron (ENSMUSG00000001424.14, intron 4 of 23) -37659 ENSMUSG00000104325.1 ENSMUSG00000104325 ENSMUST00000195742 Gm37321 TEC Interval_11143 chr1 179623655 179624873 + 0 NA intron (ENSMUSG00000038949.8, intron 10 of 10) protein_coding-intron (ENSMUSG00000038949.8, intron 10 of 10) -59581 ENSMUSG00000038936.13 ENSMUSG00000038936 ENSMUST00000192611 Sccpdh protein_coding Interval_66222 chr16 32400680 32400989 + 0 NA exon (ENSMUSG00000079625.2, exon 1 of 5) protein_coding-exon (ENSMUSG00000079625.2, exon 1 of 5) 328 ENSMUSG00000079625.2 ENSMUSG00000079625 ENSMUST00000115149 Tm4sf19 protein_coding Interval_146929 chr7 55962004 55962981 + 0 NA promoter-TSS (ENSMUSG00000030452.16) protein_coding-promoter-TSS (ENSMUSG00000030452.16) -39 ENSMUSG00000087178.7 ENSMUSG00000087178 ENSMUST00000130189 A230056P14Rik processed_transcript Interval_98192 chr2 149684712 149685567 + 0 NA Intergenic Intergenic -58036 ENSMUSG00000081494.1 ENSMUSG00000081494 ENSMUST00000118417 Gm14130 processed_pseudogene Interval_103260 chr3 37598335 37600162 + 0 NA TTS (ENSMUSG00000081093.1) processed_pseudogene-TTS (ENSMUSG00000081093.1) 824 ENSMUSG00000081093.1 ENSMUSG00000081093 ENSMUST00000119004 Gm12565 processed_pseudogene Interval_103113 chr3 35475167 35475463 + 0 NA Intergenic Intergenic 61482 ENSMUSG00000106512.1 ENSMUSG00000106512 ENSMUST00000197222 Gm43078 TEC Interval_122653 chr5 24481664 24483664 + 0 NA TTS (ENSMUSG00000023353.14) protein_coding-TTS (ENSMUSG00000023353.14) 30457 ENSMUSG00000023353.14 ENSMUSG00000023353 ENSMUST00000199250 Agap3 protein_coding Interval_81396 chr18 60487673 60487971 + 0 NA intron (ENSMUSG00000038059.7, intron 1 of 1) protein_coding-intron (ENSMUSG00000038059.7, intron 1 of 1) 13754 ENSMUSG00000038059.7 ENSMUSG00000038059 ENSMUST00000237270 Smim3 protein_coding Interval_34276 chr11 121919274 121920043 + 0 NA Intergenic Intergenic -32690 ENSMUSG00000082947.1 ENSMUSG00000082947 ENSMUST00000120180 Gm12587 processed_pseudogene Interval_9104 chr1 153611576 153613028 + 0 NA Intergenic Intergenic 8371 ENSMUSG00000099858.1 ENSMUSG00000099858 ENSMUST00000186414 Gm6652 processed_pseudogene Interval_70597 chr17 12211981 12212884 + 0 NA intron (ENSMUSG00000023827.8, intron 3 of 6) protein_coding-intron (ENSMUSG00000023827.8, intron 5 of 8) 22511 ENSMUSG00000063911.4 ENSMUSG00000063911 ENSMUST00000074412 Tdgf1-ps2 processed_pseudogene Interval_9162 chr1 154233113 154233431 + 0 NA Intergenic Intergenic 23634 ENSMUSG00000099933.1 ENSMUSG00000099933 ENSMUST00000189240 4930452N14Rik lincRNA Interval_115988 chr4 106830586 106830796 + 0 NA Intergenic Intergenic 17229 ENSMUSG00000086940.1 ENSMUSG00000086940 ENSMUST00000151369 Gm12746 lincRNA Interval_63661 chr15 102646786 102648063 + 0 NA Intergenic Intergenic -10144 ENSMUSG00000116056.1 ENSMUSG00000116056 ENSMUST00000229601 Gm4544 lincRNA Interval_165740 chr9 52061516 52062377 + 0 NA intron (ENSMUSG00000032050.18, intron 2 of 14) protein_coding-intron (ENSMUSG00000032050.18, intron 2 of 13) 13775 ENSMUSG00000032050.18 ENSMUSG00000032050 ENSMUST00000061352 Rdx protein_coding Interval_159645 chr8 95984570 95985096 + 0 NA Intergenic Intergenic 63304 ENSMUSG00000110506.1 ENSMUSG00000110506 ENSMUST00000212919 Gm8637 processed_pseudogene Interval_91826 chr2 49907946 49909090 + 0 NA intron (ENSMUSG00000026765.12, intron 4 of 9) protein_coding-intron (ENSMUSG00000026765.12, intron 4 of 9) -1638 ENSMUSG00000088825.1 ENSMUSG00000088825 ENSMUST00000158200 Gm25223 misc_RNA Interval_138994 chr6 94082828 94084043 + 0 NA intron (ENSMUSG00000045095.16, intron 1 of 24) protein_coding-intron (ENSMUSG00000045095.16, intron 1 of 21) -170931 ENSMUSG00000045095.16 ENSMUSG00000045095 ENSMUST00000203034 Magi1 protein_coding Interval_127293 chr5 102159253 102160586 + 0 NA exon (ENSMUSG00000105088.1, exon 1 of 1) processed_pseudogene-exon (ENSMUSG00000105088.1, exon 1 of 1) 393 ENSMUSG00000105088.1 ENSMUSG00000105088 ENSMUST00000195986 Gm17978 processed_pseudogene Interval_14893 chr10 40896166 40896772 + 0 NA intron (ENSMUSG00000019831.14, intron 1 of 8) protein_coding-intron (ENSMUSG00000019831.14, intron 1 of 8) 12642 ENSMUSG00000019831.14 ENSMUSG00000019831 ENSMUST00000105509 Wasf1 protein_coding Interval_162843 chr9 10265107 10266109 + 0 NA intron (ENSMUSG00000039488.15, intron 3 of 24) protein_coding-intron (ENSMUSG00000039488.15, intron 1 of 22) 24979 ENSMUSG00000093959.1 ENSMUSG00000093959 ENSMUST00000178287 Gm24496 miRNA Interval_9012 chr1 153076012 153079819 + 0 NA TTS (ENSMUSG00000042751.14) protein_coding-TTS (ENSMUSG00000042751.14) 11592 ENSMUSG00000099969.1 ENSMUSG00000099969 ENSMUST00000190117 Gm28960 antisense Interval_134104 chr6 20188355 20188762 + 0 NA Intergenic Intergenic 400505 ENSMUSG00000107067.1 ENSMUSG00000107067 ENSMUST00000201774 Gm42581 processed_pseudogene Interval_41247 chr12 112125723 112126243 + 0 NA intron (ENSMUSG00000037686.6, intron 4 of 5) protein_coding-intron (ENSMUSG00000037686.6, intron 13 of 14) -4897 ENSMUSG00000065574.1 ENSMUSG00000065574 ENSMUST00000083640 Mir203 miRNA Interval_41564 chr12 116336185 116336544 + 0 NA intron (ENSMUSG00000021171.8, intron 4 of 5) protein_coding-intron (ENSMUSG00000021171.8, intron 7 of 21) -11388 ENSMUSG00000021171.8 ENSMUSG00000021171 ENSMUST00000223150 Esyt2 protein_coding Interval_82196 chr18 68850917 68851170 + 0 NA Intergenic Intergenic -45685 ENSMUSG00000118102.1 ENSMUSG00000118102 ENSMUST00000237657 Gm50260 lincRNA Interval_173043 chrX 67470972 67471419 + 0 NA Intergenic Intergenic 12999 ENSMUSG00000086185.1 ENSMUSG00000086185 ENSMUST00000136834 1700036O09Rik lincRNA Interval_14588 chr10 36624990 36625706 + 0 NA intron (ENSMUSG00000044499.11, intron 2 of 5) protein_coding-intron (ENSMUSG00000044499.11, intron 2 of 5) -11274 ENSMUSG00000111231.1 ENSMUSG00000111231 ENSMUST00000214665 Gm47054 TEC Interval_81710 chr18 63768434 63769577 + 0 NA intron (ENSMUSG00000040560.10, intron 14 of 19) protein_coding-intron (ENSMUSG00000040560.10, intron 14 of 27) -5788 ENSMUSG00000117977.1 ENSMUSG00000117977 ENSMUST00000236836 Gm50106 antisense Interval_58001 chr15 25936271 25936661 + 0 NA intron (ENSMUSG00000022270.16, intron 1 of 5) protein_coding-intron (ENSMUSG00000022270.16, intron 3 of 8) -11761 ENSMUSG00000098719.1 ENSMUSG00000098719 ENSMUST00000184098 Mir7212 miRNA Interval_149811 chr7 101739535 101739741 + 0 NA intron (ENSMUSG00000001829.17, intron 5 of 16) protein_coding-intron (ENSMUSG00000001829.17, intron 5 of 15) -50898 ENSMUSG00000110360.1 ENSMUSG00000110360 ENSMUST00000210465 Gm45380 processed_pseudogene Interval_113451 chr4 55073476 55074072 + 0 NA intron (ENSMUSG00000060206.11, intron 11 of 12) protein_coding-intron (ENSMUSG00000060206.11, intron 9 of 10) -42789 ENSMUSG00000082704.1 ENSMUSG00000082704 ENSMUST00000120116 Gm12515 processed_pseudogene Interval_6259 chr1 104921752 104921985 + 0 NA intron (ENSMUSG00000050840.8, intron 1 of 11) protein_coding-intron (ENSMUSG00000050840.8, intron 1 of 11) -9535 ENSMUSG00000089866.1 ENSMUSG00000089866 ENSMUST00000159213 Gm15699 antisense Interval_15089 chr10 42492200 42492430 + 0 NA Intergenic Intergenic 1431 ENSMUSG00000087891.1 ENSMUSG00000087891 ENSMUST00000157266 Gm25277 misc_RNA Interval_101432 chr2 181350763 181352183 + 0 NA promoter-TSS (ENSMUSG00000038685.18) protein_coding-promoter-TSS (ENSMUSG00000038685.18) -5449 ENSMUSG00000118593.1 ENSMUSG00000118593 ENSMUST00000239235 AL928965.1 unitary_pseudogene Interval_103211 chr3 36835710 36835992 + 0 NA Intergenic Intergenic -10893 ENSMUSG00000084027.1 ENSMUSG00000084027 ENSMUST00000120538 Gm12376 processed_pseudogene Interval_137807 chr6 82687786 82689323 + 0 NA intron (ENSMUSG00000107453.1, intron 1 of 1) protein_coding-intron (ENSMUSG00000030042.15, intron 1 of 3) 8422 ENSMUSG00000107453.1 ENSMUSG00000107453 ENSMUST00000203711 Gm44145 antisense Interval_115778 chr4 103923577 103923824 + 0 NA intron (ENSMUSG00000028519.16, intron 1 of 3) protein_coding-intron (ENSMUSG00000028519.16, intron 1 of 9) 15841 ENSMUSG00000080913.1 ENSMUSG00000080913 ENSMUST00000118859 Gm12719 processed_pseudogene Interval_52805 chr14 50784867 50785658 + 0 NA intron (ENSMUSG00000006288.8, intron 1 of 5) protein_coding-intron (ENSMUSG00000006288.8, intron 1 of 9) 237 ENSMUSG00000006288.8 ENSMUSG00000006288 ENSMUST00000227934 Ttc5 protein_coding Interval_23952 chr11 28746393 28746889 + 0 NA promoter-TSS (ENSMUSG00000106400.1) miRNA-promoter-TSS (ENSMUSG00000106400.1) -375 ENSMUSG00000106400.1 ENSMUSG00000106400 ENSMUST00000196334 Mir216c miRNA Interval_55601 chr14 94894810 94896015 + 0 NA Intergenic Intergenic -34289 ENSMUSG00000089384.1 ENSMUSG00000089384 ENSMUST00000158759 Gm24680 snoRNA Interval_61300 chr15 80694138 80694823 + 0 NA TTS (ENSMUSG00000116220.1) antisense-TTS (ENSMUSG00000116220.1) 3130 ENSMUSG00000116220.1 ENSMUSG00000116220 ENSMUST00000230325 A430088P11Rik antisense Interval_80546 chr18 43737293 43737646 + 0 NA promoter-TSS (ENSMUSG00000024503.3) protein_coding-promoter-TSS (ENSMUSG00000024503.3) 88 ENSMUSG00000024503.3 ENSMUSG00000024503 ENSMUST00000025381 Spink1 protein_coding Interval_89684 chr2 24562115 24562412 + 0 NA intron (ENSMUSG00000085330.1, intron 1 of 3) lincRNA-intron (ENSMUSG00000085330.1, intron 1 of 3) 4434 ENSMUSG00000085330.1 ENSMUSG00000085330 ENSMUST00000155475 Gm13417 lincRNA Interval_81241 chr18 56707166 56709969 + 0 NA intron (ENSMUSG00000024590.8, intron 1 of 10) protein_coding-intron (ENSMUSG00000024590.8, intron 1 of 10) -19874 ENSMUSG00000024590.8 ENSMUSG00000024590 ENSMUST00000128651 Lmnb1 protein_coding Interval_126894 chr5 96810558 96810824 + 0 NA promoter-TSS (ENSMUSG00000029484.12) protein_coding-promoter-TSS (ENSMUSG00000029484.12) 12484 ENSMUSG00000105356.1 ENSMUSG00000105356 ENSMUST00000199893 Gm42603 TEC Interval_62954 chr15 98144957 98147100 + 0 NA promoter-TSS (ENSMUSG00000048175.13) protein_coding-promoter-TSS (ENSMUSG00000048175.13) 19597 ENSMUSG00000048175.13 ENSMUSG00000048175 ENSMUST00000123922 Asb8 protein_coding Interval_135783 chr6 47308549 47308717 + 0 NA Intergenic Intergenic 124456 ENSMUSG00000107853.1 ENSMUSG00000107853 ENSMUST00000203098 Gm18584 processed_pseudogene Interval_9774 chr1 162052339 162052577 + 0 NA intron (ENSMUSG00000040265.16, intron 16 of 20) protein_coding-intron (ENSMUSG00000040265.16, intron 16 of 19) 36010 ENSMUSG00000102994.1 ENSMUSG00000102994 ENSMUST00000193239 Gm37767 TEC Interval_12121 chr1 189869691 189870907 + 0 NA TTS (ENSMUSG00000026604.17) protein_coding-TTS (ENSMUSG00000026604.17) -9636 ENSMUSG00000104435.1 ENSMUSG00000104435 ENSMUST00000193794 Gm37422 antisense Interval_165460 chr9 48360832 48361036 + 0 NA intron (ENSMUSG00000044229.9, intron 2 of 10) protein_coding-intron (ENSMUSG00000044229.9, intron 2 of 10) -20080 ENSMUSG00000032028.15 ENSMUSG00000032028 ENSMUST00000142667 Nxpe2 protein_coding Interval_41694 chr12 117817121 117817451 + 0 NA intron (ENSMUSG00000021175.15, intron 1 of 4) protein_coding-intron (ENSMUSG00000021175.15, intron 1 of 4) 17065 ENSMUSG00000093544.1 ENSMUSG00000093544 ENSMUST00000175828 Gm20613 processed_pseudogene Interval_44360 chr13 44138506 44139231 + 0 NA Intergenic Intergenic -11727 ENSMUSG00000113458.1 ENSMUSG00000113458 ENSMUST00000221119 Gm33684 lincRNA Interval_30116 chr11 89326519 89326908 + 0 NA Intergenic Intergenic 23990 ENSMUSG00000085798.1 ENSMUSG00000085798 ENSMUST00000140754 Gm2018 lincRNA Interval_88916 chr2 12853101 12853413 + 0 NA Intergenic Intergenic -124682 ENSMUSG00000026730.12 ENSMUSG00000026730 ENSMUST00000195521 Pter protein_coding Interval_120521 chr4 149123277 149124107 + 0 NA Intergenic Intergenic 3071 ENSMUSG00000028971.4 ENSMUSG00000028971 ENSMUST00000030815 Cort protein_coding Interval_35696 chr12 27974543 27974746 + 0 NA intron (ENSMUSG00000113616.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000113616.1, intron 1 of 1) -5953 ENSMUSG00000113616.1 ENSMUSG00000113616 ENSMUST00000223144 Gm45941 lincRNA Interval_162026 chr8 124526356 124526570 + 0 NA intron (ENSMUSG00000031979.17, intron 2 of 4) protein_coding-intron (ENSMUSG00000031979.17, intron 2 of 17) 5644 ENSMUSG00000031979.17 ENSMUSG00000031979 ENSMUST00000129977 Cog2 protein_coding Interval_47970 chr13 94759542 94759843 + 0 NA Intergenic Intergenic -5099 ENSMUSG00000113547.1 ENSMUSG00000113547 ENSMUST00000223199 Gm46389 processed_pseudogene Interval_114503 chr4 81429719 81430486 + 0 NA intron (ENSMUSG00000028402.18, intron 1 of 47) protein_coding-intron (ENSMUSG00000028402.18, intron 1 of 46) 12542 ENSMUSG00000028402.18 ENSMUSG00000028402 ENSMUST00000142273 Mpdz protein_coding Interval_134360 chr6 26614204 26614832 + 0 NA Intergenic Intergenic -154088 ENSMUSG00000088387.1 ENSMUSG00000088387 ENSMUST00000157762 Gm24691 snRNA Interval_89962 chr2 26870557 26871769 + 0 NA Intergenic Intergenic -14365 ENSMUSG00000015787.15 ENSMUSG00000015787 ENSMUST00000102900 Abo protein_coding Interval_139584 chr6 101656939 101657205 + 0 NA Intergenic Intergenic 4838 ENSMUSG00000107738.1 ENSMUSG00000107738 ENSMUST00000204183 Gm32453 processed_pseudogene Interval_43173 chr13 24844486 24845577 + 0 NA promoter-TSS (ENSMUSG00000006711.15) protein_coding-promoter-TSS (ENSMUSG00000006711.15) 13350 ENSMUSG00000035958.3 ENSMUSG00000035958 ENSMUST00000224542 Tdp2 protein_coding Interval_30787 chr11 96462249 96462905 + 0 NA intron (ENSMUSG00000075586.4, intron 2 of 2) processed_transcript-intron (ENSMUSG00000075586.4, intron 2 of 2) 1970 ENSMUSG00000075586.4 ENSMUSG00000075586 ENSMUST00000153012 Gm11529 processed_transcript Interval_154709 chr8 22756952 22758169 + 0 NA promoter-TSS (ENSMUSG00000031538.6) protein_coding-promoter-TSS (ENSMUSG00000031538.6) -235 ENSMUSG00000031538.6 ENSMUSG00000031538 ENSMUST00000211033 Plat protein_coding Interval_53410 chr14 57086250 57086586 + 0 NA Intergenic Intergenic 18284 ENSMUSG00000046352.7 ENSMUSG00000046352 ENSMUST00000055698 Gjb2 protein_coding Interval_101350 chr2 180700479 180700690 + 0 NA intron (ENSMUSG00000038914.15, intron 1 of 14) protein_coding-intron (ENSMUSG00000038914.15, intron 1 of 15) 1766 ENSMUSG00000038914.15 ENSMUSG00000038914 ENSMUST00000103054 Dido1 protein_coding Interval_3997 chr1 65799790 65800590 + 0 NA Intergenic Intergenic -126348 ENSMUSG00000025945.11 ENSMUSG00000025945 ENSMUST00000114027 Crygf protein_coding Interval_61125 chr15 79390518 79391000 + 0 NA intron (ENSMUSG00000009035.15, intron 1 of 2) protein_coding-intron (ENSMUSG00000009035.15, intron 1 of 8) 12480 ENSMUSG00000009035.15 ENSMUSG00000009035 ENSMUST00000229049 Tmem184b protein_coding Interval_25135 chr11 44452574 44454161 + 0 NA Intergenic Intergenic 7986 ENSMUSG00000041231.15 ENSMUSG00000041231 ENSMUST00000150032 Ublcp1 protein_coding Interval_56665 chr14 121267008 121268573 + 0 NA intron (ENSMUSG00000025555.14, intron 3 of 3) protein_coding-intron (ENSMUSG00000025555.14, intron 16 of 26) 19084 ENSMUSG00000085133.2 ENSMUSG00000085133 ENSMUST00000130256 B930095G15Rik sense_intronic Interval_52072 chr14 35110889 35111347 + 0 NA intron (ENSMUSG00000041078.7, intron 4 of 15) protein_coding-intron (ENSMUSG00000041078.7, intron 4 of 15) 108320 ENSMUSG00000115826.1 ENSMUSG00000115826 ENSMUST00000227262 Gm49034 processed_pseudogene Interval_109228 chr3 138095777 138097291 + 0 NA intron (ENSMUSG00000028158.14, intron 17 of 19) protein_coding-intron (ENSMUSG00000028158.14, intron 15 of 17) -7382 ENSMUSG00000104776.1 ENSMUSG00000104776 ENSMUST00000196625 Gm43691 antisense Interval_162433 chr8 128692044 128692456 + 0 NA intron (ENSMUSG00000025809.15, intron 1 of 3) protein_coding-intron (ENSMUSG00000025809.15, intron 1 of 15) -32083 ENSMUSG00000025809.15 ENSMUSG00000025809 ENSMUST00000149116 Itgb1 protein_coding Interval_48195 chr13 97104622 97105837 + 0 NA intron (ENSMUSG00000041817.14, intron 5 of 12) protein_coding-intron (ENSMUSG00000041817.14, intron 5 of 12) -5992 ENSMUSG00000057762.6 ENSMUSG00000057762 ENSMUST00000071118 Gm6169 protein_coding Interval_149881 chr7 102200669 102201684 + 0 NA intron (ENSMUSG00000063550.8, intron 1 of 3) protein_coding-intron (ENSMUSG00000063550.8, intron 1 of 22) -17611 ENSMUSG00000063550.8 ENSMUSG00000063550 ENSMUST00000211375 Nup98 protein_coding Interval_79950 chr18 36184959 36185709 + 0 NA intron (ENSMUSG00000060275.14, intron 1 of 9) protein_coding-intron (ENSMUSG00000060275.14, intron 2 of 7) 79683 ENSMUSG00000117852.1 ENSMUSG00000117852 ENSMUST00000235667 4930471G03Rik antisense Interval_103363 chr3 40445986 40446402 + 0 NA Intergenic Intergenic 63580 ENSMUSG00000037884.6 ENSMUSG00000037884 ENSMUST00000202778 1700017G19Rik lincRNA Interval_119083 chr4 135413119 135414416 + 0 NA exon (ENSMUSG00000059713.12, exon 5 of 5) protein_coding-exon (ENSMUSG00000059713.12, exon 5 of 5) 2866 ENSMUSG00000076123.1 ENSMUSG00000076123 ENSMUST00000102169 Mir700 miRNA Interval_12927 chr10 8242293 8242817 + 0 NA intron (ENSMUSG00000047712.8, intron 6 of 6) protein_coding-intron (ENSMUSG00000047712.8, intron 7 of 7) 59687 ENSMUSG00000047712.8 ENSMUSG00000047712 ENSMUST00000061601 Ust protein_coding Interval_21308 chr10 127872426 127873202 + 0 NA intron (ENSMUSG00000074639.6, intron 1 of 3) protein_coding-intron (ENSMUSG00000074639.6, intron 1 of 3) 6340 ENSMUSG00000074639.6 ENSMUSG00000074639 ENSMUST00000092058 Rdh16f2 protein_coding Interval_174556 chrX 157644449 157645263 + 0 NA Intergenic Intergenic 6443 ENSMUSG00000081505.1 ENSMUSG00000081505 ENSMUST00000118619 Gm8644 processed_pseudogene Interval_81810 chr18 64933194 64933683 + 0 NA intron (ENSMUSG00000024589.18, intron 1 of 29) protein_coding-intron (ENSMUSG00000024589.18, intron 1 of 29) -44947 ENSMUSG00000114210.2 ENSMUSG00000114210 ENSMUST00000224731 A330084C13Rik antisense Interval_84668 chr19 14871085 14872014 + 0 NA Intergenic Intergenic 89217 ENSMUSG00000063586.1 ENSMUSG00000063586 ENSMUST00000072982 Gm5513 processed_pseudogene Interval_112626 chr4 43674955 43676136 + 0 NA intron (ENSMUSG00000078716.10, intron 1 of 4) protein_coding-intron (ENSMUSG00000078716.10, intron 1 of 4) -6400 ENSMUSG00000043633.6 ENSMUSG00000043633 ENSMUST00000134487 Fam221b protein_coding Interval_142228 chr6 139282019 139282220 + 0 NA Intergenic Intergenic 40457 ENSMUSG00000108128.1 ENSMUSG00000108128 ENSMUST00000204038 4922502N22Rik lincRNA Interval_62167 chr15 88482729 88482997 + 0 NA Intergenic Intergenic -117439 ENSMUSG00000054117.8 ENSMUSG00000054117 ENSMUST00000066949 Zdhhc25 protein_coding Interval_162896 chr9 11981789 11982508 + 0 NA Intergenic Intergenic -3899 ENSMUSG00000111111.1 ENSMUSG00000111111 ENSMUST00000217391 Gm47037 TEC Interval_7862 chr1 134222760 134223855 + 0 NA intron (ENSMUSG00000042429.8, intron 2 of 2) protein_coding-intron (ENSMUSG00000042429.8, intron 1 of 1) 12057 ENSMUSG00000042429.8 ENSMUSG00000042429 ENSMUST00000187631 Adora1 protein_coding Interval_137781 chr6 82395696 82396109 + 0 NA Intergenic Intergenic -6432 ENSMUSG00000030043.11 ENSMUSG00000030043 ENSMUST00000203775 Tacr1 protein_coding Interval_34101 chr11 120651869 120653154 + 0 NA intron (ENSMUSG00000084822.1, intron 1 of 3) antisense-intron (ENSMUSG00000084822.1, intron 1 of 3) -4401 ENSMUSG00000025141.3 ENSMUSG00000025141 ENSMUST00000145047 Myadml2 protein_coding Interval_318 chr1 3798635 3800162 + 0 NA Intergenic Intergenic -15465 ENSMUSG00000088333.2 ENSMUSG00000088333 ENSMUST00000157708 Gm27396 snRNA Interval_139086 chr6 94915726 94916888 + 0 NA Intergenic Intergenic -27527 ENSMUSG00000108187.1 ENSMUSG00000108187 ENSMUST00000203778 4930511E03Rik lincRNA Interval_77875 chr18 4968678 4968981 + 0 NA intron (ENSMUSG00000024236.18, intron 2 of 35) protein_coding-intron (ENSMUSG00000024236.18, intron 1 of 37) -66337 ENSMUSG00000024236.18 ENSMUSG00000024236 ENSMUST00000129543 Svil protein_coding Interval_40000 chr12 100393876 100394091 + 0 NA intron (ENSMUSG00000033530.8, intron 7 of 7) protein_coding-intron (ENSMUSG00000033530.8, intron 9 of 19) -24231 ENSMUSG00000113917.1 ENSMUSG00000113917 ENSMUST00000220812 Gm48382 TEC Interval_156485 chr8 48659495 48660874 + 0 NA intron (ENSMUSG00000031561.16, intron 2 of 2) protein_coding-intron (ENSMUSG00000031561.16, intron 1 of 28) -29015 ENSMUSG00000110509.1 ENSMUSG00000110509 ENSMUST00000212961 Gm45772 processed_pseudogene Interval_89631 chr2 23589866 23590850 + 0 NA Intergenic Intergenic -75135 ENSMUSG00000026771.14 ENSMUSG00000026771 ENSMUST00000123843 Spopl protein_coding Interval_136732 chr6 58711248 58713051 + 0 NA Intergenic Intergenic 69788 ENSMUSG00000108164.1 ENSMUSG00000108164 ENSMUST00000203675 Gm43899 processed_pseudogene Interval_72112 chr17 28105199 28107023 + 0 NA Intergenic Intergenic -25816 ENSMUSG00000117120.1 ENSMUSG00000117120 ENSMUST00000141806 Gm50238 processed_transcript Interval_43853 chr13 37591967 37592488 + 0 NA Intergenic Intergenic 9956 ENSMUSG00000114718.1 ENSMUSG00000114718 ENSMUST00000223615 Gm47753 processed_pseudogene Interval_58271 chr15 31541873 31543290 + 0 NA Intergenic Intergenic -11528 ENSMUSG00000039100.10 ENSMUSG00000039100 ENSMUST00000228122 Marchf6 protein_coding Interval_138392 chr6 87829915 87830121 + 0 NA TTS (ENSMUSG00000108042.1) TEC-TTS (ENSMUSG00000108042.1) 2848 ENSMUSG00000108042.1 ENSMUSG00000108042 ENSMUST00000205226 B130021K23Rik TEC Interval_67585 chr16 51513182 51513542 + 0 NA Intergenic Intergenic -96414 ENSMUSG00000116855.1 ENSMUSG00000116855 ENSMUST00000232313 Gm49608 processed_pseudogene Interval_21713 chr11 3876225 3876534 + 0 NA Intergenic Intergenic 3424 ENSMUSG00000084077.1 ENSMUSG00000084077 ENSMUST00000121172 Gm11952 processed_pseudogene Interval_163507 chr9 21773476 21775663 + 0 NA exon (ENSMUSG00000032194.9, exon 8 of 12) protein_coding-exon (ENSMUSG00000032194.9, exon 8 of 12) -14287 ENSMUSG00000074476.6 ENSMUSG00000074476 ENSMUST00000214149 Spc24 protein_coding Interval_28252 chr11 74696569 74697320 + 0 NA intron (ENSMUSG00000020745.15, intron 2 of 9) protein_coding-intron (ENSMUSG00000020745.15, intron 2 of 10) 27374 ENSMUSG00000020745.15 ENSMUSG00000020745 ENSMUST00000155493 Pafah1b1 protein_coding Interval_106972 chr3 102309488 102310566 + 0 NA intron (ENSMUSG00000105891.4, intron 2 of 4) lincRNA-intron (ENSMUSG00000105891.4, intron 2 of 4) 47505 ENSMUSG00000105891.4 ENSMUSG00000105891 ENSMUST00000196659 A230001M10Rik lincRNA Interval_66132 chr16 31860605 31860968 + 0 NA intron (ENSMUSG00000022770.17, intron 4 of 4) protein_coding-intron (ENSMUSG00000022770.17, intron 22 of 24) -18024 ENSMUSG00000022780.5 ENSMUSG00000022780 ENSMUST00000023464 Meltf protein_coding Interval_146880 chr7 54645029 54645840 + 0 NA Intergenic Intergenic -34236 ENSMUSG00000109050.1 ENSMUSG00000109050 ENSMUST00000207666 Gm6290 processed_pseudogene Interval_132084 chr5 142696430 142696722 + 0 NA intron (ENSMUSG00000050822.11, intron 1 of 3) protein_coding-intron (ENSMUSG00000050822.11, intron 1 of 3) 4064 ENSMUSG00000050822.11 ENSMUSG00000050822 ENSMUST00000058418 Slc29a4 protein_coding Interval_83381 chr18 84729557 84730568 + 0 NA exon (ENSMUSG00000047992.11, exon 3 of 5) protein_coding-exon (ENSMUSG00000047992.11, exon 3 of 5) 7329 ENSMUSG00000089410.1 ENSMUSG00000089410 ENSMUST00000158785 Gm22014 misc_RNA Interval_96027 chr2 119269795 119271333 + 0 NA intron (ENSMUSG00000034226.7, intron 2 of 2) protein_coding-intron (ENSMUSG00000034226.7, intron 2 of 2) 708 ENSMUSG00000034226.7 ENSMUSG00000034226 ENSMUST00000037360 Rhov protein_coding Interval_36580 chr12 50780414 50780821 + 0 NA intron (ENSMUSG00000112372.1, intron 3 of 8) lincRNA-intron (ENSMUSG00000112372.1, intron 3 of 8) 27520 ENSMUSG00000112372.1 ENSMUSG00000112372 ENSMUST00000220240 Gm48779 lincRNA Interval_89262 chr2 18617269 18617718 + 0 NA Intergenic Intergenic 24609 ENSMUSG00000082943.1 ENSMUSG00000082943 ENSMUST00000117996 Gm13355 processed_pseudogene Interval_122322 chr5 21274368 21275051 + 0 NA intron (ENSMUSG00000039934.12, intron 23 of 27) protein_coding-intron (ENSMUSG00000039934.12, intron 23 of 30) 4912 ENSMUSG00000105275.1 ENSMUSG00000105275 ENSMUST00000199242 Gm43214 processed_pseudogene Interval_154036 chr8 12119155 12119444 + 0 NA Intergenic Intergenic -159520 ENSMUSG00000074473.1 ENSMUSG00000074473 ENSMUST00000098935 A230072I06Rik protein_coding Interval_52263 chr14 41138158 41138501 + 0 NA Intergenic Intergenic 6541 ENSMUSG00000021789.14 ENSMUSG00000021789 ENSMUST00000170719 Sftpa1 protein_coding Interval_41828 chr12 119996635 119997399 + 0 NA intron (ENSMUSG00000048004.15, intron 1 of 4) protein_coding-intron (ENSMUSG00000048004.15, intron 1 of 3) -3510 ENSMUSG00000098707.1 ENSMUSG00000098707 ENSMUST00000184147 Gm27236 processed_pseudogene Interval_105561 chr3 87763972 87764201 + 0 NA intron (ENSMUSG00000028073.15, intron 1 of 6) protein_coding-intron (ENSMUSG00000028073.15, intron 1 of 22) 4880 ENSMUSG00000028073.15 ENSMUSG00000028073 ENSMUST00000173184 Pear1 protein_coding Interval_74834 chr17 56788340 56788671 + 0 NA intron (ENSMUSG00000024206.15, intron 4 of 5) protein_coding-intron (ENSMUSG00000024206.15, intron 6 of 17) 18255 ENSMUSG00000090273.3 ENSMUSG00000090273 ENSMUST00000168666 Prr22 protein_coding Interval_90994 chr2 33987835 33988195 + 0 NA Intergenic Intergenic 9769 ENSMUSG00000086904.1 ENSMUSG00000086904 ENSMUST00000156633 Gm13404 lincRNA Interval_140307 chr6 116298632 116299227 + 0 NA intron (ENSMUSG00000042213.17, intron 6 of 11) protein_coding-intron (ENSMUSG00000042213.17, intron 5 of 9) 34664 ENSMUSG00000042213.17 ENSMUSG00000042213 ENSMUST00000221824 Zfand4 protein_coding Interval_70322 chr17 8468579 8469257 + 0 NA Intergenic Intergenic 33507 ENSMUSG00000062327.10 ENSMUSG00000062327 ENSMUST00000177118 T protein_coding Interval_91983 chr2 52137864 52138289 + 0 NA intron (ENSMUSG00000026950.18, intron 164 of 164) protein_coding-intron (ENSMUSG00000026950.18, intron 73 of 73) 25943 ENSMUSG00000036202.16 ENSMUSG00000036202 ENSMUST00000152178 Rif1 protein_coding Interval_74119 chr17 46622547 46622836 + 0 NA intron (ENSMUSG00000023972.10, intron 1 of 19) protein_coding-intron (ENSMUSG00000023972.10, intron 1 of 19) 23331 ENSMUSG00000003546.10 ENSMUSG00000003546 ENSMUST00000003642 Klc4 protein_coding Interval_79120 chr18 24702072 24703201 + 0 NA Intergenic Intergenic 6712 ENSMUSG00000054745.1 ENSMUSG00000054745 ENSMUST00000067987 Gm9955 protein_coding Interval_15623 chr10 52405185 52405376 + 0 NA TTS (ENSMUSG00000038624.13) protein_coding-TTS (ENSMUSG00000038624.13) 16308 ENSMUSG00000038624.13 ENSMUSG00000038624 ENSMUST00000067085 Nepn protein_coding Interval_71116 chr17 18661008 18661409 + 0 NA Intergenic Intergenic -33195 ENSMUSG00000116837.2 ENSMUSG00000116837 ENSMUST00000231667 Vmn2r-ps115 unprocessed_pseudogene Interval_57659 chr15 14047388 14048799 + 0 NA Intergenic Intergenic -94862 ENSMUSG00000115551.1 ENSMUSG00000115551 ENSMUST00000228924 Gm49115 processed_pseudogene Interval_18932 chr10 93238210 93238661 + 0 NA promoter-TSS (ENSMUSG00000020015.10) protein_coding-promoter-TSS (ENSMUSG00000020015.10) -588 ENSMUSG00000020015.10 ENSMUSG00000020015 ENSMUST00000216729 Cdk17 protein_coding Interval_155543 chr8 34207738 34209872 + 0 NA Intergenic Intergenic -8054 ENSMUSG00000100605.1 ENSMUSG00000100605 ENSMUST00000188318 Gm29243 lincRNA Interval_10964 chr1 177620457 177620968 + 0 NA Intergenic Intergenic 16225 ENSMUSG00000103767.1 ENSMUSG00000103767 ENSMUST00000192759 Gm37858 TEC Interval_143160 chr7 4003751 4004762 + 0 NA exon (ENSMUSG00000055541.17, exon 7 of 7) protein_coding-exon (ENSMUSG00000055541.17, exon 7 of 7) -10738 ENSMUSG00000082093.2 ENSMUSG00000082093 ENSMUST00000122455 Gm15928 processed_pseudogene Interval_53810 chr14 62042554 62042835 + 0 NA Intergenic Intergenic 30375 ENSMUSG00000114368.1 ENSMUSG00000114368 ENSMUST00000224570 Gm47953 processed_pseudogene Interval_47003 chr13 74208207 74209397 + 0 NA promoter-TSS (ENSMUSG00000034152.6) protein_coding-promoter-TSS (ENSMUSG00000034152.6) -540 ENSMUSG00000034152.6 ENSMUSG00000034152 ENSMUST00000220548 Exoc3 protein_coding Interval_39507 chr12 88872559 88872755 + 0 NA intron (ENSMUSG00000066392.12, intron 4 of 7) protein_coding-intron (ENSMUSG00000066392.12, intron 3 of 19) 240388 ENSMUSG00000113997.1 ENSMUSG00000113997 ENSMUST00000222440 1700040E09Rik lincRNA Interval_88172 chr19 60256457 60256927 + 0 NA Intergenic Intergenic 14839 ENSMUSG00000099678.1 ENSMUSG00000099678 ENSMUST00000186261 Gm28351 lincRNA Interval_63443 chr15 101121929 101123557 + 0 NA Intergenic Intergenic -5794 ENSMUSG00000000530.16 ENSMUSG00000000530 ENSMUST00000128525 Acvrl1 protein_coding Interval_54614 chr14 71862270 71862487 + 0 NA intron (ENSMUSG00000115304.1, intron 2 of 3) lincRNA-intron (ENSMUSG00000115304.1, intron 3 of 6) 5676 ENSMUSG00000115304.1 ENSMUSG00000115304 ENSMUST00000228197 4930434J06Rik lincRNA Interval_110679 chr4 6302161 6302494 + 0 NA Intergenic Intergenic -26694 ENSMUSG00000028240.2 ENSMUSG00000028240 ENSMUST00000147346 Cyp7a1 protein_coding Interval_93399 chr2 72815263 72815545 + 0 NA Intergenic Intergenic -1687 ENSMUSG00000085427.7 ENSMUSG00000085427 ENSMUST00000125746 6430710C18Rik lincRNA Interval_99478 chr2 162228073 162228344 + 0 NA intron (ENSMUSG00000053141.16, intron 6 of 29) protein_coding-intron (ENSMUSG00000053141.16, intron 6 of 30) -162605 ENSMUSG00000084919.1 ENSMUSG00000084919 ENSMUST00000151688 Ptprtos antisense Interval_111005 chr4 11154957 11156937 + 0 NA promoter-TSS (ENSMUSG00000028211.11) protein_coding-promoter-TSS (ENSMUSG00000028211.11) -497 ENSMUSG00000028211.11 ENSMUSG00000028211 ENSMUST00000132346 Trp53inp1 protein_coding Interval_61740 chr15 83694629 83695008 + 0 NA intron (ENSMUSG00000016763.15, intron 3 of 21) protein_coding-intron (ENSMUSG00000016763.15, intron 3 of 22) -81079 ENSMUSG00000016763.15 ENSMUSG00000016763 ENSMUST00000229057 Scube1 protein_coding Interval_6673 chr1 118662075 118663788 + 0 NA intron (ENSMUSG00000026380.10, intron 8 of 14) protein_coding-intron (ENSMUSG00000026380.10, intron 8 of 14) -11136 ENSMUSG00000101624.1 ENSMUSG00000101624 ENSMUST00000185504 Gm28882 processed_pseudogene Interval_120091 chr4 141766799 141767919 + 0 NA intron (ENSMUSG00000040697.10, intron 11 of 14) protein_coding-intron (ENSMUSG00000040697.10, intron 11 of 14) 20687 ENSMUSG00000040706.4 ENSMUSG00000040706 ENSMUST00000038161 Agmat protein_coding Interval_56686 chr14 121368210 121368754 + 0 NA intron (ENSMUSG00000063410.8, intron 1 of 1) protein_coding-intron (ENSMUSG00000063410.8, intron 1 of 10) 11529 ENSMUSG00000063410.8 ENSMUSG00000063410 ENSMUST00000226158 Stk24 protein_coding Interval_88008 chr19 57787502 57787690 + 0 NA intron (ENSMUSG00000054843.9, intron 25 of 28) protein_coding-intron (ENSMUSG00000054843.9, intron 25 of 28) 176562 ENSMUSG00000054843.9 ENSMUSG00000054843 ENSMUST00000077282 Atrnl1 protein_coding Interval_151109 chr7 118587932 118588498 + 0 NA Intergenic Intergenic -3529 ENSMUSG00000042246.5 ENSMUSG00000042246 ENSMUST00000139693 Tmc7 protein_coding Interval_34337 chr12 3480236 3481707 + 0 NA intron (ENSMUSG00000037486.18, intron 1 of 4) protein_coding-intron (ENSMUSG00000037486.18, intron 7 of 10) 6312 ENSMUSG00000037486.18 ENSMUSG00000037486 ENSMUST00000152196 Asxl2 protein_coding Interval_171861 chr9 121837089 121837293 + 0 NA intron (ENSMUSG00000079235.10, intron 1 of 15) protein_coding-intron (ENSMUSG00000079235.10, intron 1 of 15) 9746 ENSMUSG00000111341.1 ENSMUSG00000111341 ENSMUST00000217162 Gm47111 TEC Interval_117764 chr4 126095906 126097361 + 0 NA promoter-TSS (ENSMUSG00000050188.8) protein_coding-promoter-TSS (ENSMUSG00000050188.8) -20 ENSMUSG00000050188.8 ENSMUSG00000050188 ENSMUST00000151831 Lsm10 protein_coding Interval_47188 chr13 77537046 77538467 + 0 NA intron (ENSMUSG00000071252.6, intron 19 of 19) protein_coding-intron (ENSMUSG00000071252.6, intron 19 of 19) 16617 ENSMUSG00000114778.1 ENSMUSG00000114778 ENSMUST00000223622 Gm9634 processed_pseudogene Interval_38914 chr12 83763536 83765213 + 0 NA intron (ENSMUSG00000021223.13, intron 1 of 16) protein_coding-intron (ENSMUSG00000021223.13, intron 1 of 26) 712 ENSMUSG00000021223.13 ENSMUSG00000021223 ENSMUST00000152904 Papln protein_coding Interval_131752 chr5 139658783 139660122 + 0 NA Intergenic Intergenic -42195 ENSMUSG00000104637.1 ENSMUSG00000104637 ENSMUST00000198319 Gm42424 processed_pseudogene Interval_52044 chr14 34819085 34820754 + 0 NA promoter-TSS (ENSMUSG00000041078.7) protein_coding-promoter-TSS (ENSMUSG00000041078.7) -49864 ENSMUSG00000115109.1 ENSMUSG00000115109 ENSMUST00000228194 Gm49032 lincRNA Interval_33069 chr11 114165580 114166192 + 0 NA Intergenic Intergenic 20891 ENSMUSG00000086135.1 ENSMUSG00000086135 ENSMUST00000126577 1700001J04Rik antisense Interval_10781 chr1 174631551 174632072 + 0 NA intron (ENSMUSG00000028354.13, intron 2 of 3) protein_coding-intron (ENSMUSG00000028354.13, intron 6 of 17) 22002 ENSMUSG00000028354.13 ENSMUSG00000028354 ENSMUST00000193905 Fmn2 protein_coding Interval_41626 chr12 117158978 117160635 + 0 NA intron (ENSMUSG00000056553.14, intron 12 of 22) protein_coding-intron (ENSMUSG00000056553.14, intron 12 of 22) -8591 ENSMUSG00000099907.1 ENSMUSG00000099907 ENSMUST00000186114 Gm10421 processed_transcript Interval_142692 chr6 145028727 145029198 + 0 NA intron (ENSMUSG00000030268.17, intron 2 of 5) protein_coding-intron (ENSMUSG00000030268.17, intron 5 of 10) 9226 ENSMUSG00000088867.1 ENSMUSG00000088867 ENSMUST00000158242 Gm23071 rRNA Interval_65253 chr16 20889427 20890458 + 0 NA intron (ENSMUSG00000116850.1, intron 1 of 3) lincRNA-intron (ENSMUSG00000116850.1, intron 1 of 3) 3617 ENSMUSG00000116850.1 ENSMUSG00000116850 ENSMUST00000232124 Gm49742 lincRNA Interval_27722 chr11 69681414 69683008 + 0 NA promoter-TSS (ENSMUSG00000005204.12) protein_coding-promoter-TSS (ENSMUSG00000005204.12) -2290 ENSMUSG00000085890.7 ENSMUSG00000085890 ENSMUST00000145435 Tnfsf13os antisense Interval_50670 chr14 17967148 17967857 + 0 NA intron (ENSMUSG00000021779.17, intron 2 of 4) protein_coding-intron (ENSMUSG00000021779.17, intron 4 of 9) 4681 ENSMUSG00000021779.17 ENSMUSG00000021779 ENSMUST00000022304 Thrb protein_coding Interval_69672 chr16 95197014 95197215 + 0 NA intron (ENSMUSG00000116720.1, intron 3 of 4) antisense-intron (ENSMUSG00000116720.1, intron 3 of 4) -25604 ENSMUSG00000116601.1 ENSMUSG00000116601 ENSMUST00000231527 Gm49642 TEC Interval_62747 chr15 96604402 96604636 + 0 NA intron (ENSMUSG00000023169.15, intron 4 of 11) protein_coding-intron (ENSMUSG00000023169.15, intron 4 of 15) 37694 ENSMUSG00000023169.15 ENSMUSG00000023169 ENSMUST00000229253 Slc38a1 protein_coding Interval_161182 chr8 118283645 118284865 + 0 NA intron (ENSMUSG00000031841.19, intron 1 of 7) protein_coding-intron (ENSMUSG00000031841.19, intron 1 of 13) 97936 ENSMUSG00000110662.1 ENSMUSG00000110662 ENSMUST00000213075 Gm45722 processed_pseudogene Interval_14478 chr10 34189676 34190146 + 0 NA intron (ENSMUSG00000039497.8, intron 1 of 2) protein_coding-intron (ENSMUSG00000039497.8, intron 1 of 5) -9983 ENSMUSG00000111361.1 ENSMUSG00000111361 ENSMUST00000213617 Gm47445 TEC Interval_30344 chr11 93737886 93738531 + 0 NA Intergenic Intergenic 43126 ENSMUSG00000080872.1 ENSMUSG00000080872 ENSMUST00000122414 Gm11506 processed_pseudogene Interval_119666 chr4 139090662 139093804 + 0 NA promoter-TSS (ENSMUSG00000041120.6) protein_coding-promoter-TSS (ENSMUSG00000041120.6) -127 ENSMUSG00000041120.6 ENSMUSG00000041120 ENSMUST00000132900 Nbl1 protein_coding Interval_30300 chr11 93237079 93237319 + 0 NA intron (ENSMUSG00000056158.14, intron 2 of 8) protein_coding-intron (ENSMUSG00000056158.14, intron 3 of 9) 139171 ENSMUSG00000056158.14 ENSMUSG00000056158 ENSMUST00000107863 Car10 protein_coding Interval_123567 chr5 33518868 33520306 + 0 NA Intergenic Intergenic -82123 ENSMUSG00000107248.1 ENSMUSG00000107248 ENSMUST00000200726 Gm43851 lincRNA Interval_168792 chr9 87127470 87127669 + 0 NA exon (ENSMUSG00000099539.1, exon 1 of 1) processed_pseudogene-exon (ENSMUSG00000099539.1, exon 1 of 1) 235 ENSMUSG00000099539.1 ENSMUSG00000099539 ENSMUST00000187559 Gm8282 processed_pseudogene Interval_1000 chr1 13784576 13784788 + 0 NA Intergenic Intergenic 2197 ENSMUSG00000097711.1 ENSMUSG00000097711 ENSMUST00000180415 Gm5523 processed_pseudogene Interval_129299 chr5 118762933 118763631 + 0 NA exon (ENSMUSG00000018076.12, exon 31 of 31) protein_coding-exon (ENSMUSG00000018076.12, exon 31 of 31) 12895 ENSMUSG00000018076.12 ENSMUSG00000018076 ENSMUST00000202787 Med13l protein_coding Interval_164507 chr9 37539223 37539944 + 0 NA intron (ENSMUSG00000001943.8, intron 1 of 5) protein_coding-intron (ENSMUSG00000001943.8, intron 1 of 6) 292 ENSMUSG00000001943.8 ENSMUSG00000001943 ENSMUST00000215710 Vsig2 protein_coding Interval_75367 chr17 66155118 66155359 + 0 NA Intergenic Intergenic 11529 ENSMUSG00000035842.10 ENSMUSG00000035842 ENSMUST00000226095 Ddx11 protein_coding Interval_84937 chr19 19218809 19219757 + 0 NA Intergenic Intergenic -56616 ENSMUSG00000088907.1 ENSMUSG00000088907 ENSMUST00000158282 Gm25437 snoRNA Interval_12249 chr1 191110158 191111694 + 0 NA Intergenic Intergenic 13079 ENSMUSG00000026630.9 ENSMUSG00000026630 ENSMUST00000191621 Batf3 protein_coding Interval_85053 chr19 21828117 21828585 + 0 NA intron (ENSMUSG00000024754.13, intron 16 of 24) protein_coding-intron (ENSMUSG00000024754.13, intron 15 of 23) 5405 ENSMUSG00000118021.1 ENSMUSG00000118021 ENSMUST00000237423 Gm50130 antisense Interval_37688 chr12 71116309 71116596 + 0 NA intron (ENSMUSG00000021078.5, intron 1 of 3) protein_coding-intron (ENSMUSG00000021078.5, intron 2 of 4) 4982 ENSMUSG00000021078.5 ENSMUSG00000021078 ENSMUST00000221962 Tomm20l protein_coding Interval_17423 chr10 76524917 76525358 + 0 NA Intergenic Intergenic -16745 ENSMUSG00000033105.12 ENSMUSG00000033105 ENSMUST00000162282 Lss protein_coding Interval_7946 chr1 134708513 134709801 + 0 NA promoter-TSS (ENSMUSG00000026452.15) protein_coding-promoter-TSS (ENSMUSG00000026452.15) 62476 ENSMUSG00000026452.15 ENSMUSG00000026452 ENSMUST00000187702 Syt2 protein_coding Interval_67633 chr16 54643583 54644033 + 0 NA Intergenic Intergenic 15380 ENSMUSG00000089311.1 ENSMUSG00000089311 ENSMUST00000158686 Gm23180 snoRNA Interval_161738 chr8 122459660 122461993 + 0 NA promoter-TSS (ENSMUSG00000006587.6) protein_coding-promoter-TSS (ENSMUSG00000006587.6) -93 ENSMUSG00000006587.6 ENSMUSG00000006587 ENSMUST00000006762 Snai3 protein_coding Interval_164705 chr9 40693779 40693996 + 0 NA intron (ENSMUSG00000032024.10, intron 1 of 1) protein_coding-intron (ENSMUSG00000032024.10, intron 1 of 6) 7852 ENSMUSG00000032024.10 ENSMUSG00000032024 ENSMUST00000134153 Clmp protein_coding Interval_119460 chr4 137736067 137736368 + 0 NA Intergenic Intergenic -29611 ENSMUSG00000087476.1 ENSMUSG00000087476 ENSMUST00000135358 Rap1gapos antisense Interval_58799 chr15 38134042 38134965 + 0 NA Intergenic Intergenic 55401 ENSMUSG00000115771.1 ENSMUSG00000115771 ENSMUST00000228698 Gm49312 bidirectional_promoter_lncRNA Interval_170283 chr9 106675116 106676563 + 0 NA intron (ENSMUSG00000040813.16, intron 1 of 2) protein_coding-intron (ENSMUSG00000040813.16, intron 3 of 5) 9463 ENSMUSG00000040813.16 ENSMUSG00000040813 ENSMUST00000185645 Tex264 protein_coding Interval_128671 chr5 114625589 114626016 + 0 NA TTS (ENSMUSG00000014158.12) protein_coding-TTS (ENSMUSG00000014158.12) 19097 ENSMUSG00000014158.12 ENSMUSG00000014158 ENSMUST00000212469 Trpv4 protein_coding Interval_130742 chr5 130078977 130080712 + 0 NA intron (ENSMUSG00000034118.15, intron 1 of 5) protein_coding-intron (ENSMUSG00000034118.15, intron 1 of 5) -13745 ENSMUSG00000034118.15 ENSMUSG00000034118 ENSMUST00000128335 Tpst1 protein_coding Interval_68344 chr16 73735969 73737290 + 0 NA Intergenic Intergenic -132577 ENSMUSG00000116642.1 ENSMUSG00000116642 ENSMUST00000231958 Gm18168 unprocessed_pseudogene Interval_40742 chr12 108074558 108075732 + 0 NA Intergenic Intergenic -71731 ENSMUSG00000048251.15 ENSMUSG00000048251 ENSMUST00000109891 Bcl11b protein_coding Interval_131093 chr5 135049083 135050399 + 0 NA TTS (ENSMUSG00000007207.10) protein_coding-TTS (ENSMUSG00000007207.10) 4375 ENSMUSG00000088008.1 ENSMUSG00000088008 ENSMUST00000157383 Gm25492 scaRNA Interval_118030 chr4 128473800 128474222 + 0 NA exon (ENSMUSG00000028804.20, exon 34 of 71) protein_coding-exon (ENSMUSG00000028804.20, exon 34 of 71) -78564 ENSMUSG00000028804.20 ENSMUSG00000028804 ENSMUST00000221199 Csmd2 protein_coding Interval_52665 chr14 48371655 48372151 + 0 NA Intergenic Intergenic -7501 ENSMUSG00000080522.1 ENSMUSG00000080522 ENSMUST00000116872 Gm23881 miRNA Interval_58744 chr15 37669941 37670521 + 0 NA intron (ENSMUSG00000051359.15, intron 1 of 2) protein_coding-intron (ENSMUSG00000051359.15, intron 1 of 6) -30473 ENSMUSG00000086125.1 ENSMUSG00000086125 ENSMUST00000136305 Gm15942 antisense Interval_18156 chr10 83069760 83070439 + 0 NA intron (ENSMUSG00000034612.7, intron 1 of 2) protein_coding-intron (ENSMUSG00000034612.7, intron 1 of 2) -38404 ENSMUSG00000112084.1 ENSMUSG00000112084 ENSMUST00000218071 Gm10773 TEC Interval_52300 chr14 44152809 44154683 + 0 NA Intergenic Intergenic 15361 ENSMUSG00000091048.1 ENSMUSG00000091048 ENSMUST00000171204 Gm8207 unprocessed_pseudogene Interval_146716 chr7 49661816 49662846 + 0 NA Intergenic Intergenic -25482 ENSMUSG00000030507.6 ENSMUSG00000030507 ENSMUST00000032717 Dbx1 protein_coding Interval_79370 chr18 31348619 31349027 + 0 NA TTS (ENSMUSG00000117502.1) processed_pseudogene-TTS (ENSMUSG00000117502.1) 1381 ENSMUSG00000117502.1 ENSMUSG00000117502 ENSMUST00000234093 Gm7941 processed_pseudogene Interval_140122 chr6 114440447 114441268 + 0 NA intron (ENSMUSG00000053004.9, intron 2 of 2) protein_coding-intron (ENSMUSG00000053004.9, intron 2 of 2) 37191 ENSMUSG00000053004.9 ENSMUSG00000053004 ENSMUST00000160780 Hrh1 protein_coding Interval_77169 chr17 87044250 87044996 + 0 NA Intergenic Intergenic 9202 ENSMUSG00000087736.1 ENSMUSG00000087736 ENSMUST00000157111 Gm24648 snoRNA Interval_79690 chr18 34550451 34550713 + 0 NA Intergenic Intergenic 8269 ENSMUSG00000012282.2 ENSMUSG00000012282 ENSMUST00000012426 Wnt8a protein_coding Interval_89752 chr2 25224073 25225430 + 0 NA promoter-TSS (ENSMUSG00000036752.4) protein_coding-promoter-TSS (ENSMUSG00000036752.4) -97 ENSMUSG00000036752.4 ENSMUSG00000036752 ENSMUST00000145607 Tubb4b protein_coding Interval_165684 chr9 50934188 50934954 + 0 NA exon (ENSMUSG00000037112.16, exon 4 of 4) protein_coding-exon (ENSMUSG00000037112.16, exon 4 of 4) 46621 ENSMUSG00000088708.1 ENSMUSG00000088708 ENSMUST00000158083 Gm25558 snRNA Interval_7185 chr1 127576184 127577105 + 0 NA intron (ENSMUSG00000026347.13, intron 2 of 7) protein_coding-intron (ENSMUSG00000026347.13, intron 2 of 8) 102904 ENSMUSG00000026347.13 ENSMUSG00000026347 ENSMUST00000162406 Tmem163 protein_coding Interval_5469 chr1 89078563 89079672 + 0 NA intron (ENSMUSG00000036206.12, intron 1 of 2) protein_coding-intron (ENSMUSG00000036206.12, intron 1 of 5) 8664 ENSMUSG00000036206.12 ENSMUSG00000036206 ENSMUST00000123745 Sh3bp4 protein_coding Interval_106361 chr3 95639777 95640572 + 0 NA exon (ENSMUSG00000106383.1, exon 1 of 1) TEC-exon (ENSMUSG00000106383.1, exon 1 of 1) 870 ENSMUSG00000106383.1 ENSMUSG00000106383 ENSMUST00000200640 E330034L11Rik TEC Interval_43065 chr13 23570466 23572179 + 0 NA promoter-TSS (ENSMUSG00000058385.8) protein_coding-promoter-TSS (ENSMUSG00000058385.8) -74 ENSMUSG00000058385.8 ENSMUSG00000058385 ENSMUST00000079251 H2bc8 protein_coding Interval_99045 chr2 156830536 156830743 + 0 NA Intergenic Intergenic 9253 ENSMUSG00000087179.8 ENSMUSG00000087179 ENSMUST00000134838 Gm14230 lincRNA Interval_18443 chr10 86021481 86022551 + 0 NA promoter-TSS (ENSMUSG00000001786.14) protein_coding-promoter-TSS (ENSMUSG00000001786.14) -3 ENSMUSG00000001786.14 ENSMUSG00000001786 ENSMUST00000130383 Fbxo7 protein_coding Interval_171398 chr9 117405630 117406477 + 0 NA intron (ENSMUSG00000039607.17, intron 1 of 14) protein_coding-intron (ENSMUSG00000039607.17, intron 1 of 14) 3074 ENSMUSG00000092504.1 ENSMUSG00000092504 ENSMUST00000173358 Gm20396 processed_pseudogene Interval_142971 chr6 147719210 147719489 + 0 NA intron (ENSMUSG00000086019.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000086019.1, intron 1 of 1) 102 ENSMUSG00000086019.1 ENSMUSG00000086019 ENSMUST00000126447 Gm15762 lincRNA Interval_25143 chr11 44525219 44526410 + 0 NA intron (ENSMUSG00000019189.13, intron 2 of 4) protein_coding-intron (ENSMUSG00000019189.13, intron 2 of 10) -31017 ENSMUSG00000019189.13 ENSMUSG00000019189 ENSMUST00000129676 Rnf145 protein_coding Interval_21119 chr10 126663410 126663895 + 0 NA promoter-TSS (ENSMUSG00000112208.1) lincRNA-promoter-TSS (ENSMUSG00000112208.1) -346 ENSMUSG00000112208.1 ENSMUSG00000112208 ENSMUST00000219762 Gm40797 lincRNA Interval_136807 chr6 60629028 60629472 + 0 NA Intergenic Intergenic 42472 ENSMUSG00000108003.1 ENSMUSG00000108003 ENSMUST00000204603 Gm35386 lincRNA Interval_88724 chr2 10003631 10003822 + 0 NA intron (ENSMUSG00000025782.12, intron 2 of 6) protein_coding-intron (ENSMUSG00000025782.12, intron 2 of 6) -44112 ENSMUSG00000103570.1 ENSMUSG00000103570 ENSMUST00000194765 C630004M23Rik TEC Interval_3297 chr1 55874244 55875312 + 0 NA Intergenic Intergenic -56463 ENSMUSG00000099950.1 ENSMUSG00000099950 ENSMUST00000188040 9130227L01Rik lincRNA Interval_167622 chr9 71215048 71216643 + 0 NA promoter-TSS (ENSMUSG00000013584.5) protein_coding-promoter-TSS (ENSMUSG00000013584.5) 56 ENSMUSG00000013584.5 ENSMUSG00000013584 ENSMUST00000034723 Aldh1a2 protein_coding Interval_2991 chr1 51928339 51928652 + 0 NA Intergenic Intergenic 10170 ENSMUSG00000100696.1 ENSMUSG00000100696 ENSMUST00000189886 Gm8419 processed_pseudogene Interval_148137 chr7 79442177 79442391 + 0 NA intron (ENSMUSG00000039187.16, intron 1 of 5) protein_coding-intron (ENSMUSG00000039187.16, intron 27 of 37) 1616 ENSMUSG00000039187.16 ENSMUSG00000039187 ENSMUST00000206121 Fanci protein_coding Interval_96080 chr2 119653822 119654138 + 0 NA Intergenic Intergenic 8832 ENSMUSG00000027305.9 ENSMUSG00000027305 ENSMUST00000131596 Ndufaf1 protein_coding Interval_50210 chr14 9950127 9950363 + 0 NA intron (ENSMUSG00000060579.13, intron 1 of 5) protein_coding-intron (ENSMUSG00000060579.13, intron 5 of 9) -45877 ENSMUSG00000114691.1 ENSMUSG00000114691 ENSMUST00000224071 Gm48438 TEC Interval_29939 chr11 87904475 87904768 + 0 NA Intergenic Intergenic -7381 ENSMUSG00000093920.2 ENSMUSG00000093920 ENSMUST00000081417 Olfr463 protein_coding Interval_42736 chr13 18740814 18741086 + 0 NA intron (ENSMUSG00000041236.8, intron 3 of 4) protein_coding-intron (ENSMUSG00000041236.8, intron 3 of 28) -38893 ENSMUSG00000041236.8 ENSMUSG00000041236 ENSMUST00000222102 Vps41 protein_coding Interval_14332 chr10 30950838 30951062 + 0 NA Intergenic Intergenic -8465 ENSMUSG00000094008.1 ENSMUSG00000094008 ENSMUST00000178825 Gm24168 snRNA Interval_51529 chr14 29895599 29895807 + 0 NA Intergenic Intergenic -7247 ENSMUSG00000114606.1 ENSMUSG00000114606 ENSMUST00000223966 Gm7633 transcribed_processed_pseudogene Interval_152598 chr7 134995013 134995346 + 0 NA intron (ENSMUSG00000058325.6, intron 28 of 29) protein_coding-intron (ENSMUSG00000058325.6, intron 28 of 51) -56901 ENSMUSG00000073805.5 ENSMUSG00000073805 ENSMUST00000210826 Insyn2a protein_coding Interval_102738 chr3 30699514 30700285 + 0 NA promoter-TSS (ENSMUSG00000074653.10) protein_coding-promoter-TSS (ENSMUSG00000074653.10) -131 ENSMUSG00000074653.10 ENSMUSG00000074653 ENSMUST00000130731 Lrrc31 protein_coding Interval_60307 chr15 72733770 72733988 + 0 NA intron (ENSMUSG00000047921.17, intron 18 of 21) protein_coding-intron (ENSMUSG00000047921.17, intron 18 of 21) 8475 ENSMUSG00000116314.1 ENSMUSG00000116314 ENSMUST00000229330 Gm49459 processed_pseudogene Interval_108163 chr3 122085038 122085954 + 0 NA intron (ENSMUSG00000028125.14, intron 3 of 6) protein_coding-intron (ENSMUSG00000028125.14, intron 8 of 49) 61666 ENSMUSG00000104869.1 ENSMUSG00000104869 ENSMUST00000197868 Gm42544 TEC Interval_128619 chr5 114337461 114338447 + 0 NA intron (ENSMUSG00000066952.11, intron 12 of 30) protein_coding-intron (ENSMUSG00000066952.11, intron 12 of 28) 23013 ENSMUSG00000066952.11 ENSMUSG00000066952 ENSMUST00000125230 Myo1h protein_coding Interval_99163 chr2 157676461 157677645 + 0 NA Intergenic Intergenic 36748 ENSMUSG00000077290.1 ENSMUSG00000077290 ENSMUST00000104102 Gm25407 snoRNA Interval_40689 chr12 107329231 107329655 + 0 NA Intergenic Intergenic -89698 ENSMUSG00000090607.1 ENSMUSG00000090607 ENSMUST00000165496 Gm17052 processed_pseudogene Interval_88976 chr2 13893919 13894125 + 0 NA intron (ENSMUSG00000063275.15, intron 7 of 7) protein_coding-intron (ENSMUSG00000063275.15, intron 7 of 7) -100729 ENSMUSG00000003418.11 ENSMUSG00000003418 ENSMUST00000150781 St8sia6 protein_coding Interval_122282 chr5 20929733 20930866 + 0 NA intron (ENSMUSG00000039968.9, intron 1 of 6) protein_coding-intron (ENSMUSG00000039968.9, intron 1 of 7) -7900 ENSMUSG00000039968.9 ENSMUSG00000039968 ENSMUST00000197089 Rsbn1l protein_coding Interval_28107 chr11 72882304 72882532 + 0 NA TTS (ENSMUSG00000065298.1) snRNA-TTS (ENSMUSG00000065298.1) 626 ENSMUSG00000065298.1 ENSMUSG00000065298 ENSMUST00000083364 Gm26121 snRNA Interval_122472 chr5 23279869 23280477 + 0 NA promoter-TSS (ENSMUSG00000098903.1) miRNA-promoter-TSS (ENSMUSG00000098903.1) -262 ENSMUSG00000098903.1 ENSMUSG00000098903 ENSMUST00000184168 Gm28022 miRNA Interval_86606 chr19 42008492 42009359 + 0 NA intron (ENSMUSG00000025171.2, intron 1 of 2) protein_coding-intron (ENSMUSG00000025171.2, intron 1 of 2) -8224 ENSMUSG00000025171.2 ENSMUSG00000025171 ENSMUST00000237817 Ubtd1 protein_coding Interval_82511 chr18 74793928 74794277 + 0 NA intron (ENSMUSG00000036880.10, intron 1 of 2) protein_coding-intron (ENSMUSG00000036880.10, intron 4 of 9) 719 ENSMUSG00000036880.10 ENSMUSG00000036880 ENSMUST00000237306 Acaa2 protein_coding Interval_134473 chr6 28995457 28995879 + 0 NA intron (ENSMUSG00000092090.2, intron 1 of 1) lincRNA-intron (ENSMUSG00000092090.2, intron 1 of 1) 14034 ENSMUSG00000092090.2 ENSMUSG00000092090 ENSMUST00000164104 Gm3294 lincRNA Interval_168408 chr9 80101167 80101415 + 0 NA intron (ENSMUSG00000034252.14, intron 4 of 6) protein_coding-intron (ENSMUSG00000034252.14, intron 5 of 22) 20646 ENSMUSG00000084917.3 ENSMUSG00000084917 ENSMUST00000165458 Gm17477 antisense Interval_12679 chr10 4289030 4290814 + 0 NA intron (ENSMUSG00000038587.10, intron 1 of 3) protein_coding-intron (ENSMUSG00000038587.10, intron 1 of 3) -44623 ENSMUSG00000038587.10 ENSMUSG00000038587 ENSMUST00000215696 Akap12 protein_coding Interval_52586 chr14 47707711 47708159 + 0 NA intron (ENSMUSG00000021843.17, intron 25 of 38) protein_coding-intron (ENSMUSG00000021843.17, intron 26 of 41) 44148 ENSMUSG00000021843.17 ENSMUSG00000021843 ENSMUST00000190857 Ktn1 protein_coding Interval_155428 chr8 33511699 33512336 + 0 NA Intergenic Intergenic -4721 ENSMUSG00000009628.14 ENSMUSG00000009628 ENSMUST00000009772 Tex15 protein_coding Interval_96734 chr2 127553365 127553538 + 0 NA Intergenic Intergenic -12037 ENSMUSG00000027376.15 ENSMUSG00000027376 ENSMUST00000155581 Prom2 protein_coding Interval_30073 chr11 89003285 89003675 + 0 NA intron (ENSMUSG00000000275.16, intron 1 of 8) protein_coding-intron (ENSMUSG00000000275.16, intron 1 of 7) 4104 ENSMUSG00000000275.16 ENSMUSG00000000275 ENSMUST00000000284 Trim25 protein_coding Interval_127621 chr5 105838249 105838987 + 0 NA Intergenic Intergenic -19630 ENSMUSG00000084878.1 ENSMUSG00000084878 ENSMUST00000135958 Lrrc8dos antisense Interval_148894 chr7 89891459 89892076 + 0 NA intron (ENSMUSG00000039391.11, intron 4 of 14) protein_coding-intron (ENSMUSG00000039391.11, intron 4 of 14) 11862 ENSMUSG00000039391.11 ENSMUSG00000039391 ENSMUST00000041195 Ccdc81 protein_coding Interval_69579 chr16 94395449 94395788 + 0 NA exon (ENSMUSG00000040785.19, exon 11 of 11) protein_coding-exon (ENSMUSG00000040785.19, exon 11 of 11) 12710 ENSMUSG00000040785.19 ENSMUSG00000040785 ENSMUST00000129536 Ttc3 protein_coding Interval_93683 chr2 75808052 75809534 + 0 NA TTS (ENSMUSG00000081833.1) processed_pseudogene-TTS (ENSMUSG00000081833.1) 435 ENSMUSG00000081833.1 ENSMUSG00000081833 ENSMUST00000122366 Gm13669 processed_pseudogene Interval_65261 chr16 21004740 21005279 + 0 NA Intergenic Intergenic -16319 ENSMUSG00000116592.1 ENSMUSG00000116592 ENSMUST00000231537 Gm18770 processed_pseudogene Interval_3574 chr1 59670023 59671428 + 0 NA promoter-TSS (ENSMUSG00000026021.15) protein_coding-promoter-TSS (ENSMUSG00000026021.15) 67 ENSMUSG00000026021.15 ENSMUSG00000026021 ENSMUST00000123857 Sumo1 protein_coding Interval_42787 chr13 19541972 19542307 + 0 NA Intergenic Intergenic 16152 ENSMUSG00000113251.1 ENSMUSG00000113251 ENSMUST00000221671 Gm18363 processed_pseudogene Interval_113559 chr4 56699893 56700252 + 0 NA Intergenic Intergenic -21037 ENSMUSG00000077663.1 ENSMUSG00000077663 ENSMUST00000104475 Gm26144 snoRNA Interval_105431 chr3 86265602 86265930 + 0 NA intron (ENSMUSG00000028080.16, intron 1 of 38) protein_coding-intron (ENSMUSG00000028080.16, intron 2 of 56) -2191 ENSMUSG00000103759.1 ENSMUSG00000103759 ENSMUST00000193963 Gm37288 processed_pseudogene Interval_130037 chr5 123837431 123838052 + 0 NA Intergenic Intergenic 27758 ENSMUSG00000045502.6 ENSMUSG00000045502 ENSMUST00000057145 Hcar2 protein_coding Interval_132401 chr5 144724925 144725796 + 0 NA Intergenic Intergenic -1563 ENSMUSG00000082524.3 ENSMUSG00000082524 ENSMUST00000121256 Gm6272 processed_pseudogene Interval_100116 chr2 167163898 167164220 + 0 NA intron (ENSMUSG00000050556.9, intron 1 of 1) protein_coding-intron (ENSMUSG00000050556.9, intron 2 of 2) -24643 ENSMUSG00000085151.7 ENSMUSG00000085151 ENSMUST00000147446 1110018N20Rik processed_transcript Interval_86975 chr19 45288504 45289256 + 0 NA Intergenic Intergenic 15303 ENSMUSG00000100417.2 ENSMUSG00000100417 ENSMUST00000235311 Gm28578 lincRNA Interval_39048 chr12 84670364 84672164 + 0 NA Intergenic Intergenic -6036 ENSMUSG00000113317.1 ENSMUSG00000113317 ENSMUST00000221117 Gm48573 antisense Interval_60964 chr15 78320751 78321274 + 0 NA Intergenic Intergenic -5044 ENSMUSG00000071713.6 ENSMUSG00000071713 ENSMUST00000231888 Csf2rb protein_coding Interval_35127 chr12 17458955 17460183 + 0 NA Intergenic Intergenic 22951 ENSMUSG00000113246.1 ENSMUSG00000113246 ENSMUST00000220527 Gm36752 lincRNA Interval_16074 chr10 60553062 60554112 + 0 NA intron (ENSMUSG00000012819.15, intron 5 of 65) protein_coding-intron (ENSMUSG00000012819.15, intron 5 of 66) 153683 ENSMUSG00000090439.3 ENSMUSG00000090439 ENSMUST00000218360 Gm17455 protein_coding Interval_16083 chr10 60615811 60616129 + 0 NA intron (ENSMUSG00000012819.15, intron 4 of 7) protein_coding-intron (ENSMUSG00000012819.15, intron 2 of 66) 136813 ENSMUSG00000020100.15 ENSMUSG00000020100 ENSMUST00000144989 Slc29a3 protein_coding Interval_44010 chr13 39440413 39441344 + 0 NA intron (ENSMUSG00000114512.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000114512.1, intron 1 of 1) 313 ENSMUSG00000114512.1 ENSMUSG00000114512 ENSMUST00000226065 Gm47348 lincRNA Interval_65410 chr16 22194839 22195859 + 0 NA Intergenic Intergenic -28895 ENSMUSG00000064686.1 ENSMUSG00000064686 ENSMUST00000082752 Gm25810 snRNA Interval_9337 chr1 156392568 156394207 + 0 NA intron (ENSMUSG00000026601.14, intron 3 of 9) protein_coding-intron (ENSMUSG00000026601.14, intron 4 of 10) 27041 ENSMUSG00000026601.14 ENSMUSG00000026601 ENSMUST00000179744 Axdnd1 protein_coding Interval_53119 chr14 54567881 54570033 + 0 NA exon (ENSMUSG00000022178.11, exon 8 of 8) protein_coding-exon (ENSMUSG00000022178.11, exon 8 of 8) 3125 ENSMUSG00000022178.11 ENSMUSG00000022178 ENSMUST00000226463 Ajuba protein_coding Interval_113014 chr4 46858859 46859075 + 0 NA intron (ENSMUSG00000039809.10, intron 2 of 18) protein_coding-intron (ENSMUSG00000039809.10, intron 2 of 18) 935 ENSMUSG00000039809.10 ENSMUSG00000039809 ENSMUST00000206773 Gabbr2 protein_coding Interval_102920 chr3 32804594 32806124 + 0 NA Intergenic Intergenic -12352 ENSMUSG00000056900.13 ENSMUSG00000056900 ENSMUST00000156769 Usp13 protein_coding Interval_138415 chr6 88006984 88007599 + 0 NA intron (ENSMUSG00000079477.9, intron 4 of 4) protein_coding-intron (ENSMUSG00000079477.9, intron 3 of 5) -13112 ENSMUSG00000108227.1 ENSMUSG00000108227 ENSMUST00000203702 4933412L11Rik TEC Interval_9226 chr1 155232228 155232501 + 0 NA promoter-TSS (ENSMUSG00000033722.9) protein_coding-promoter-TSS (ENSMUSG00000033722.9) 1060 ENSMUSG00000103670.1 ENSMUSG00000103670 ENSMUST00000192162 Gm37622 antisense Interval_3045 chr1 52630352 52631764 + 0 NA exon (ENSMUSG00000043015.15, exon 1 of 4) protein_coding-exon (ENSMUSG00000043015.15, exon 1 of 4) -14123 ENSMUSG00000043015.15 ENSMUSG00000043015 ENSMUST00000191076 Nemp2 protein_coding Interval_84333 chr19 10176895 10177408 + 0 NA promoter-TSS (ENSMUSG00000117700.1) processed_pseudogene-promoter-TSS (ENSMUSG00000117700.1) -990 ENSMUSG00000117700.1 ENSMUSG00000117700 ENSMUST00000235345 Gm50359 processed_pseudogene Interval_110199 chr3 154198969 154199264 + 0 NA intron (ENSMUSG00000028360.10, intron 2 of 21) protein_coding-intron (ENSMUSG00000028360.10, intron 2 of 21) 50384 ENSMUSG00000106500.1 ENSMUSG00000106500 ENSMUST00000200319 Gm42540 TEC Interval_125083 chr5 64343286 64345131 + 0 NA intron (ENSMUSG00000029174.18, intron 7 of 8) protein_coding-intron (ENSMUSG00000029174.18, intron 20 of 21) -16306 ENSMUSG00000105730.1 ENSMUSG00000105730 ENSMUST00000196357 Gm43838 lincRNA Interval_145073 chr7 29894224 29894862 + 0 NA exon (ENSMUSG00000062040.14, exon 5 of 5) protein_coding-exon (ENSMUSG00000062040.14, exon 5 of 5) 4320 ENSMUSG00000062040.14 ENSMUSG00000062040 ENSMUST00000160411 Zfp27 protein_coding Interval_807 chr1 11521482 11522133 + 0 NA intron (ENSMUSG00000057715.13, intron 3 of 12) protein_coding-intron (ENSMUSG00000057715.13, intron 3 of 13) -57499 ENSMUSG00000057715.13 ENSMUSG00000057715 ENSMUST00000191437 A830018L16Rik protein_coding Interval_90280 chr2 29510161 29510380 + 0 NA TTS (ENSMUSG00000026799.15) protein_coding-TTS (ENSMUSG00000026799.15) 12058 ENSMUSG00000082413.1 ENSMUSG00000082413 ENSMUST00000117074 Gm13401 processed_pseudogene Interval_167727 chr9 72315466 72315981 + 0 NA exon (ENSMUSG00000102225.1, exon 1 of 1) TEC-exon (ENSMUSG00000102225.1, exon 1 of 1) 592 ENSMUSG00000102225.1 ENSMUSG00000102225 ENSMUST00000193207 Gm37983 TEC Interval_58089 chr15 27791925 27794015 + 0 NA intron (ENSMUSG00000022263.10, intron 33 of 35) protein_coding-intron (ENSMUSG00000022263.10, intron 34 of 56) -63337 ENSMUSG00000115641.1 ENSMUSG00000115641 ENSMUST00000228765 Gm9891 TEC Interval_119892 chr4 140715417 140715624 + 0 NA intron (ENSMUSG00000040945.13, intron 1 of 2) protein_coding-intron (ENSMUSG00000040945.13, intron 7 of 12) -1523 ENSMUSG00000093071.1 ENSMUSG00000093071 ENSMUST00000175330 Gm25951 miRNA Interval_56245 chr14 114832718 114834149 + 0 NA intron (ENSMUSG00000115320.1, intron 1 of 5) lincRNA-intron (ENSMUSG00000115320.1, intron 1 of 5) 1468 ENSMUSG00000115320.1 ENSMUSG00000115320 ENSMUST00000226121 4930524C18Rik lincRNA Interval_60901 chr15 77736332 77736806 + 0 NA TTS (ENSMUSG00000068246.6) protein_coding-TTS (ENSMUSG00000068246.6) -4192 ENSMUSG00000115979.1 ENSMUSG00000115979 ENSMUST00000230156 Gm49410 TEC Interval_69380 chr16 92594897 92595984 + 0 NA Intergenic Intergenic -17374 ENSMUSG00000097139.3 ENSMUSG00000097139 ENSMUST00000180989 Gm26626 antisense Interval_1276 chr1 18976837 18977116 + 0 NA Intergenic Intergenic -7143 ENSMUSG00000088800.1 ENSMUSG00000088800 ENSMUST00000158175 Gm24075 snoRNA Interval_10400 chr1 170426358 170426910 + 0 NA intron (ENSMUSG00000038473.14, intron 2 of 7) protein_coding-intron (ENSMUSG00000038473.14, intron 2 of 3) -105854 ENSMUSG00000038473.14 ENSMUSG00000038473 ENSMUST00000159665 Nos1ap protein_coding Interval_133867 chr6 13760133 13760334 + 0 NA Intergenic Intergenic 79262 ENSMUSG00000048216.13 ENSMUSG00000048216 ENSMUST00000127072 Gpr85 protein_coding Interval_48957 chr13 105829618 105830005 + 0 NA Intergenic Intergenic 3867 ENSMUSG00000114671.1 ENSMUSG00000114671 ENSMUST00000225365 Gm48211 processed_pseudogene Interval_87083 chr19 46026515 46026885 + 0 NA Intergenic Intergenic 18511 ENSMUSG00000025223.15 ENSMUSG00000025223 ENSMUST00000136203 Ldb1 protein_coding Interval_131539 chr5 137928369 137928783 + 0 NA exon (ENSMUSG00000105787.1, exon 1 of 1) processed_pseudogene-exon (ENSMUSG00000105787.1, exon 1 of 1) 301 ENSMUSG00000105787.1 ENSMUSG00000105787 ENSMUST00000200510 Gm8099 processed_pseudogene Interval_107130 chr3 103761318 103762856 + 0 NA intron (ENSMUSG00000008730.17, intron 5 of 15) protein_coding-intron (ENSMUSG00000008730.17, intron 5 of 15) 5029 ENSMUSG00000105229.1 ENSMUSG00000105229 ENSMUST00000198162 Gm43149 sense_intronic Interval_89882 chr2 26198147 26198774 + 0 NA Intergenic Intergenic 4981 ENSMUSG00000026934.15 ENSMUSG00000026934 ENSMUST00000149637 Lhx3 protein_coding Interval_143632 chr7 13392151 13392350 + 0 NA Intergenic Intergenic -6058 ENSMUSG00000005649.17 ENSMUSG00000005649 ENSMUST00000152995 Cabp5 protein_coding Interval_133425 chr6 4968308 4968817 + 0 NA intron (ENSMUSG00000032827.15, intron 1 of 17) protein_coding-intron (ENSMUSG00000032827.15, intron 2 of 15) 9579 ENSMUSG00000097396.1 ENSMUSG00000097396 ENSMUST00000180645 Gm26556 TEC Interval_166897 chr9 63786021 63787080 + 0 NA Intergenic Intergenic 15247 ENSMUSG00000111137.1 ENSMUSG00000111137 ENSMUST00000215986 Gm2553 processed_pseudogene Interval_46190 chr13 62382343 62383869 + 0 NA promoter-TSS (ENSMUSG00000095876.1) miRNA-promoter-TSS (ENSMUSG00000095876.1) 45 ENSMUSG00000094942.7 ENSMUSG00000094942 ENSMUST00000202194 Gm3604 protein_coding Interval_169467 chr9 97783113 97783396 + 0 NA intron (ENSMUSG00000032452.12, intron 2 of 16) protein_coding-intron (ENSMUSG00000032452.12, intron 2 of 17) 146901 ENSMUSG00000104462.1 ENSMUSG00000104462 ENSMUST00000191863 Gm37661 TEC Interval_8536 chr1 140978356 140978619 + 0 NA Intergenic Intergenic 155160 ENSMUSG00000102500.1 ENSMUSG00000102500 ENSMUST00000194837 Gm37371 TEC Interval_84164 chr19 7702794 7703191 + 0 NA TTS (ENSMUSG00000081596.1) processed_pseudogene-TTS (ENSMUSG00000081596.1) 2121 ENSMUSG00000081596.1 ENSMUSG00000081596 ENSMUST00000119342 Gm15968 processed_pseudogene Interval_146043 chr7 43442982 43444522 + 0 NA promoter-TSS (ENSMUSG00000004610.4) protein_coding-promoter-TSS (ENSMUSG00000004610.4) -379 ENSMUSG00000107482.2 ENSMUSG00000107482 ENSMUST00000204680 Etfbl protein_coding Interval_95130 chr2 104130975 104131210 + 0 NA Intergenic Intergenic 8323 ENSMUSG00000032671.5 ENSMUSG00000032671 ENSMUST00000040374 A930018P22Rik protein_coding Interval_146349 chr7 45456434 45457741 + 0 NA TTS (ENSMUSG00000003865.16) protein_coding-TTS (ENSMUSG00000003865.16) 1110 ENSMUSG00000076036.1 ENSMUSG00000076036 ENSMUST00000102082 Gm22133 miRNA Interval_145552 chr7 35570433 35571826 + 0 NA Intergenic Intergenic 14453 ENSMUSG00000056043.5 ENSMUSG00000056043 ENSMUST00000069912 Rgs9bp protein_coding Interval_131679 chr5 139257809 139259074 + 0 NA intron (ENSMUSG00000025858.12, intron 1 of 6) protein_coding-intron (ENSMUSG00000025858.12, intron 1 of 8) 4944 ENSMUSG00000025858.12 ENSMUSG00000025858 ENSMUST00000124420 Get4 protein_coding Interval_61843 chr15 84609896 84610442 + 0 NA Intergenic Intergenic -33052 ENSMUSG00000116409.1 ENSMUSG00000116409 ENSMUST00000229199 Gm34095 lincRNA Interval_139385 chr6 99700749 99701079 + 0 NA Intergenic Intergenic 8235 ENSMUSG00000072875.2 ENSMUSG00000072875 ENSMUST00000101122 Gpr27 protein_coding Interval_123099 chr5 29708226 29708619 + 0 NA Intergenic Intergenic -1212 ENSMUSG00000088150.1 ENSMUSG00000088150 ENSMUST00000157525 Gm26346 misc_RNA Interval_105895 chr3 89960287 89960931 + 0 NA promoter-TSS (ENSMUSG00000060671.12) protein_coding-promoter-TSS (ENSMUSG00000060671.12) 7554 ENSMUSG00000065045.1 ENSMUSG00000065045 ENSMUST00000083111 Gm24046 snRNA Interval_138591 chr6 89761845 89763218 + 0 NA Intergenic Intergenic 21765 ENSMUSG00000094586.4 ENSMUSG00000094586 ENSMUST00000226562 Vmn1r41 protein_coding Interval_26265 chr11 55511473 55512245 + 0 NA Intergenic Intergenic -2987 ENSMUSG00000086460.1 ENSMUSG00000086460 ENSMUST00000152968 Gm12236 antisense Interval_95675 chr2 114011302 114012076 + 0 NA exon (ENSMUSG00000068615.4, exon 2 of 2) protein_coding-exon (ENSMUSG00000068615.4, exon 2 of 2) -1878 ENSMUSG00000092201.7 ENSMUSG00000092201 ENSMUST00000140041 A530058N18Rik processed_transcript Interval_137642 chr6 77242636 77244960 + 0 NA exon (ENSMUSG00000060780.2, exon 2 of 3) protein_coding-exon (ENSMUSG00000060780.2, exon 2 of 3) 876 ENSMUSG00000060780.2 ENSMUSG00000060780 ENSMUST00000161811 Lrrtm1 protein_coding Interval_119119 chr4 135666038 135668025 + 0 NA Intergenic Intergenic -19256 ENSMUSG00000062157.6 ENSMUSG00000062157 ENSMUST00000074408 Ifnlr1 protein_coding Interval_156395 chr8 47906800 47907645 + 0 NA intron (ENSMUSG00000031563.8, intron 2 of 22) protein_coding-intron (ENSMUSG00000031563.8, intron 2 of 22) 8040 ENSMUSG00000064519.1 ENSMUSG00000064519 ENSMUST00000082585 n-R5s97 rRNA Interval_73179 chr17 35300789 35302418 + 0 NA Intergenic Intergenic 4714 ENSMUSG00000092438.1 ENSMUSG00000092438 ENSMUST00000172937 Gm18734 unprocessed_pseudogene Interval_86909 chr19 44761396 44761759 + 0 NA intron (ENSMUSG00000004231.15, intron 2 of 9) protein_coding-intron (ENSMUSG00000004231.15, intron 2 of 10) 5532 ENSMUSG00000004231.15 ENSMUSG00000004231 ENSMUST00000173346 Pax2 protein_coding Interval_64243 chr16 9709929 9710319 + 0 NA intron (ENSMUSG00000059003.12, intron 4 of 13) protein_coding-intron (ENSMUSG00000059003.12, intron 2 of 11) 284799 ENSMUSG00000059003.12 ENSMUSG00000059003 ENSMUST00000197242 Grin2a protein_coding Interval_5861 chr1 92737470 92738576 + 0 NA Intergenic Intergenic -20821 ENSMUSG00000100546.1 ENSMUSG00000100546 ENSMUST00000188188 Gm29483 lincRNA Interval_58148 chr15 29687168 29687407 + 0 NA Intergenic Intergenic 26117 ENSMUSG00000092639.1 ENSMUSG00000092639 ENSMUST00000174898 Mir3964 miRNA Interval_74759 chr17 56357061 56357842 + 0 NA intron (ENSMUSG00000024201.12, intron 5 of 21) protein_coding-intron (ENSMUSG00000024201.12, intron 5 of 22) -36066 ENSMUSG00000024201.12 ENSMUSG00000024201 ENSMUST00000141507 Kdm4b protein_coding Interval_115505 chr4 99568663 99569892 + 0 NA promoter-TSS (ENSMUSG00000087332.1) lincRNA-promoter-TSS (ENSMUSG00000087332.1) -223 ENSMUSG00000087332.1 ENSMUSG00000087332 ENSMUST00000132108 Gm12690 lincRNA Interval_140567 chr6 119601600 119602347 + 0 NA intron (ENSMUSG00000030172.15, intron 17 of 18) protein_coding-intron (ENSMUSG00000030172.15, intron 17 of 18) 20132 ENSMUSG00000030172.15 ENSMUSG00000030172 ENSMUST00000183741 Erc1 protein_coding Interval_151777 chr7 126587681 126588339 + 0 NA TTS (ENSMUSG00000044701.5) protein_coding-TTS (ENSMUSG00000044701.5) 336 ENSMUSG00000042759.12 ENSMUSG00000042759 ENSMUST00000144173 Apobr protein_coding Interval_154564 chr8 19588854 19589782 + 0 NA Intergenic Intergenic 9378 ENSMUSG00000081920.2 ENSMUSG00000081920 ENSMUST00000119098 Selenot-ps processed_pseudogene Interval_133480 chr6 5525312 5526174 + 0 NA Intergenic Intergenic -29482 ENSMUSG00000019577.6 ENSMUSG00000019577 ENSMUST00000134068 Pdk4 protein_coding Interval_27642 chr11 69242445 69242692 + 0 NA Intergenic Intergenic 1969 ENSMUSG00000089438.1 ENSMUSG00000089438 ENSMUST00000158813 Gm23194 snRNA Interval_169653 chr9 99729771 99731678 + 0 NA intron (ENSMUSG00000089655.1, intron 1 of 2) antisense-intron (ENSMUSG00000089655.1, intron 1 of 2) 19793 ENSMUSG00000077215.1 ENSMUSG00000077215 ENSMUST00000104027 Gm23949 snoRNA Interval_107959 chr3 117494163 117494668 + 0 NA intron (ENSMUSG00000033342.15, intron 1 of 5) protein_coding-intron (ENSMUSG00000033342.15, intron 1 of 5) 9331 ENSMUSG00000033342.15 ENSMUSG00000033342 ENSMUST00000106473 Plppr5 protein_coding Interval_54070 chr14 64982551 64983505 + 0 NA intron (ENSMUSG00000021975.9, intron 2 of 16) protein_coding-intron (ENSMUSG00000021975.9, intron 2 of 16) 32983 ENSMUSG00000021975.9 ENSMUSG00000021975 ENSMUST00000225790 Ints9 protein_coding Interval_65605 chr16 23987680 23989308 + 0 NA promoter-TSS (ENSMUSG00000110291.1) protein_coding-promoter-TSS (ENSMUSG00000110291.1) 12 ENSMUSG00000110291.1 ENSMUSG00000110291 ENSMUST00000210705 Gm37419 protein_coding Interval_61290 chr15 80603785 80604619 + 0 NA intron (ENSMUSG00000042351.9, intron 1 of 7) protein_coding-intron (ENSMUSG00000042351.9, intron 1 of 7) -19320 ENSMUSG00000042351.9 ENSMUSG00000042351 ENSMUST00000230910 Grap2 protein_coding Interval_56363 chr14 118088488 118090353 + 0 NA Intergenic Intergenic 43335 ENSMUSG00000022130.10 ENSMUSG00000022130 ENSMUST00000228085 Tgds protein_coding Interval_88796 chr2 11098778 11100675 + 0 NA exon (ENSMUSG00000083900.2, exon 1 of 1) processed_pseudogene-exon (ENSMUSG00000083900.2, exon 1 of 1) 536 ENSMUSG00000083900.2 ENSMUSG00000083900 ENSMUST00000121757 Gm13294 processed_pseudogene Interval_9836 chr1 162831244 162832907 + 0 NA exon (ENSMUSG00000040181.14, exon 1 of 1) protein_coding-exon (ENSMUSG00000040181.14, exon 1 of 1) 2597 ENSMUSG00000040181.14 ENSMUSG00000040181 ENSMUST00000111518 Fmo1 protein_coding Interval_17451 chr10 76902446 76902924 + 0 NA intron (ENSMUSG00000001120.15, intron 1 of 18) protein_coding-intron (ENSMUSG00000001120.15, intron 1 of 15) 81216 ENSMUSG00000102522.1 ENSMUSG00000102522 ENSMUST00000194879 Gm37782 TEC Interval_64039 chr16 5937753 5938042 + 0 NA intron (ENSMUSG00000008658.16, intron 1 of 11) protein_coding-intron (ENSMUSG00000008658.16, intron 1 of 11) -37688 ENSMUSG00000101481.1 ENSMUSG00000101481 ENSMUST00000190515 1700123O21Rik sense_intronic Interval_64379 chr16 10957289 10958379 + 0 NA Intergenic Intergenic -7890 ENSMUSG00000093897.1 ENSMUSG00000093897 ENSMUST00000177685 Gm26268 miRNA Interval_157084 chr8 65046237 65048150 + 0 NA Intergenic Intergenic -9857 ENSMUSG00000079042.10 ENSMUSG00000079042 ENSMUST00000124790 Apela protein_coding Interval_130202 chr5 124899830 124900524 + 0 NA intron (ENSMUSG00000079215.8, intron 3 of 3) protein_coding-intron (ENSMUSG00000079215.8, intron 3 of 3) 26025 ENSMUSG00000079215.8 ENSMUSG00000079215 ENSMUST00000134473 Zfp664 protein_coding Interval_10287 chr1 168056465 168057954 + 0 NA intron (ENSMUSG00000093538.2, intron 1 of 2) antisense-intron (ENSMUSG00000093538.2, intron 1 of 2) 53070 ENSMUSG00000093538.2 ENSMUSG00000093538 ENSMUST00000177351 Gm20711 antisense Interval_35047 chr12 16853321 16854006 + 0 NA Intergenic Intergenic -2782 ENSMUSG00000114018.1 ENSMUSG00000114018 ENSMUST00000221201 Gm36495 lincRNA Interval_122785 chr5 25465952 25466970 + 0 NA intron (ENSMUSG00000038056.15, intron 1 of 13) protein_coding-intron (ENSMUSG00000038056.15, intron 1 of 58) 16156 ENSMUSG00000092510.1 ENSMUSG00000092510 ENSMUST00000172802 Gm18343 processed_pseudogene Interval_165773 chr9 52575488 52575758 + 0 NA Intergenic Intergenic 104157 ENSMUSG00000078307.3 ENSMUSG00000078307 ENSMUST00000213843 AI593442 protein_coding Interval_79609 chr18 33991483 33991741 + 0 NA intron (ENSMUSG00000024376.7, intron 2 of 2) protein_coding-intron (ENSMUSG00000024376.7, intron 2 of 23) 15354 ENSMUSG00000024376.7 ENSMUSG00000024376 ENSMUST00000237971 Epb41l4a protein_coding Interval_28727 chr11 77947548 77948733 + 0 NA intron (ENSMUSG00000000632.13, intron 1 of 15) protein_coding-intron (ENSMUSG00000000632.13, intron 1 of 15) 17101 ENSMUSG00000000632.13 ENSMUSG00000000632 ENSMUST00000126866 Sez6 protein_coding Interval_152078 chr7 128860033 128860840 + 0 NA intron (ENSMUSG00000108600.1, intron 1 of 5) lincRNA-intron (ENSMUSG00000108600.1, intron 1 of 5) 34089 ENSMUSG00000080363.1 ENSMUSG00000080363 ENSMUST00000116713 Gm25778 miRNA Interval_86924 chr19 44907904 44909561 + 0 NA Intergenic Intergenic -34120 ENSMUSG00000036097.8 ENSMUSG00000036097 ENSMUST00000237505 Slf2 protein_coding Interval_174492 chrX 153358824 153360698 + 0 NA intron (ENSMUSG00000041649.13, intron 1 of 7) protein_coding-intron (ENSMUSG00000041649.13, intron 1 of 7) 44309 ENSMUSG00000080743.2 ENSMUSG00000080743 ENSMUST00000122032 Gm7150 processed_pseudogene Interval_137899 chr6 83215064 83215886 + 0 NA Intergenic Intergenic 20932 ENSMUSG00000031865.16 ENSMUSG00000031865 ENSMUST00000153793 Dctn1 protein_coding Interval_58235 chr15 31272514 31274098 + 0 NA TTS (ENSMUSG00000039168.15) protein_coding-TTS (ENSMUSG00000039168.15) -3185 ENSMUSG00000055416.6 ENSMUSG00000055416 ENSMUST00000068987 Fam136b-ps processed_pseudogene Interval_71294 chr17 21981817 21982347 + 0 NA intron (ENSMUSG00000053347.15, intron 1 of 5) protein_coding-intron (ENSMUSG00000053347.15, intron 1 of 3) -13288 ENSMUSG00000117025.1 ENSMUSG00000117025 ENSMUST00000232730 Gm49950 processed_pseudogene Interval_116609 chr4 116036129 116036871 + 0 NA intron (ENSMUSG00000028706.14, intron 4 of 5) protein_coding-intron (ENSMUSG00000028706.14, intron 3 of 4) 16880 ENSMUSG00000028706.14 ENSMUSG00000028706 ENSMUST00000151720 Nsun4 protein_coding Interval_49887 chr13 117804044 117804746 + 0 NA intron (ENSMUSG00000021730.8, intron 2 of 7) protein_coding-intron (ENSMUSG00000021730.8, intron 2 of 7) -84384 ENSMUSG00000079048.8 ENSMUSG00000079048 ENSMUST00000110292 4933413L06Rik antisense Interval_44554 chr13 46008813 46009085 + 0 NA Intergenic Intergenic 43598 ENSMUSG00000038152.4 ENSMUSG00000038152 ENSMUST00000189843 5033430I15Rik lincRNA Interval_7212 chr1 127845805 127846394 + 0 NA intron (ENSMUSG00000051590.10, intron 3 of 13) protein_coding-intron (ENSMUSG00000051590.10, intron 3 of 13) -5779 ENSMUSG00000051590.10 ENSMUSG00000051590 ENSMUST00000061512 Map3k19 protein_coding Interval_15038 chr10 42135157 42135671 + 0 NA Intergenic Intergenic -80108 ENSMUSG00000085666.3 ENSMUSG00000085666 ENSMUST00000121229 Tdg-ps2 processed_pseudogene Interval_39099 chr12 85032675 85032951 + 0 NA intron (ENSMUSG00000021244.15, intron 2 of 16) protein_coding-intron (ENSMUSG00000021244.15, intron 5 of 20) -9414 ENSMUSG00000021244.15 ENSMUSG00000021244 ENSMUST00000166605 Ylpm1 protein_coding Interval_83052 chr18 80821716 80822208 + 0 NA promoter-TSS (ENSMUSG00000114891.1) antisense-promoter-TSS (ENSMUSG00000114891.1) -285 ENSMUSG00000114891.1 ENSMUSG00000114891 ENSMUST00000225900 Gm47272 antisense Interval_113343 chr4 53618532 53619485 + 0 NA intron (ENSMUSG00000028412.17, intron 1 of 1) protein_coding-intron (ENSMUSG00000028412.17, intron 15 of 15) -24272 ENSMUSG00000054752.16 ENSMUSG00000054752 ENSMUST00000180164 Fsd1l protein_coding Interval_167838 chr9 72995933 72997393 + 0 NA intron (ENSMUSG00000034563.16, intron 2 of 5) protein_coding-intron (ENSMUSG00000034563.16, intron 1 of 8) -8538 ENSMUSG00000098589.2 ENSMUSG00000098589 ENSMUST00000184712 Gm27353 miRNA Interval_136059 chr6 50381491 50381959 + 0 NA intron (ENSMUSG00000029822.15, intron 1 of 5) protein_coding-intron (ENSMUSG00000029822.15, intron 2 of 21) -29768 ENSMUSG00000029822.15 ENSMUSG00000029822 ENSMUST00000154333 Osbpl3 protein_coding Interval_168096 chr9 76363387 76364502 + 0 NA Intergenic Intergenic -40088 ENSMUSG00000032360.16 ENSMUSG00000032360 ENSMUST00000184200 Hcrtr2 protein_coding Interval_81177 chr18 55815732 55816536 + 0 NA Intergenic Intergenic 22815 ENSMUSG00000098007.1 ENSMUSG00000098007 ENSMUST00000182528 Gm8614 processed_pseudogene Interval_145580 chr7 35709845 35710541 + 0 NA intron (ENSMUSG00000043671.14, intron 12 of 18) protein_coding-intron (ENSMUSG00000043671.14, intron 12 of 18) -1628 ENSMUSG00000043671.14 ENSMUSG00000043671 ENSMUST00000124116 Dpy19l3 protein_coding Interval_81825 chr18 65029555 65029773 + 0 NA intron (ENSMUSG00000024589.18, intron 1 of 29) protein_coding-intron (ENSMUSG00000024589.18, intron 1 of 29) -28489 ENSMUSG00000117895.1 ENSMUSG00000117895 ENSMUST00000237218 Gm50368 antisense Interval_98696 chr2 154372171 154374213 + 0 NA promoter-TSS (ENSMUSG00000027487.11) protein_coding-promoter-TSS (ENSMUSG00000027487.11) -18848 ENSMUSG00000027487.11 ENSMUSG00000027487 ENSMUST00000137918 Cdk5rap1 protein_coding Interval_63257 chr15 99966922 99967295 + 0 NA promoter-TSS (ENSMUSG00000045350.15) protein_coding-promoter-TSS (ENSMUSG00000045350.15) -47 ENSMUSG00000045350.15 ENSMUSG00000045350 ENSMUST00000100209 Fam186a protein_coding Interval_174302 chrX 144285832 144286107 + 0 NA exon (ENSMUSG00000083200.1, exon 1 of 1) processed_pseudogene-exon (ENSMUSG00000083200.1, exon 1 of 1) 2364 ENSMUSG00000083200.1 ENSMUSG00000083200 ENSMUST00000120163 Gm15066 processed_pseudogene Interval_126408 chr5 88158759 88159408 + 0 NA Intergenic Intergenic -4984 ENSMUSG00000079438.1 ENSMUSG00000079438 ENSMUST00000113255 Gm11115 protein_coding Interval_12639 chr10 4079473 4080548 + 0 NA intron (ENSMUSG00000040675.17, intron 20 of 27) protein_coding-intron (ENSMUSG00000040675.17, intron 20 of 27) -24303 ENSMUSG00000065792.1 ENSMUSG00000065792 ENSMUST00000083858 Gm25515 snRNA Interval_86865 chr19 44473896 44474552 + 0 NA Intergenic Intergenic 21207 ENSMUSG00000117796.1 ENSMUSG00000117796 ENSMUST00000237075 Gm35406 lincRNA Interval_78597 chr18 15037585 15038141 + 0 NA intron (ENSMUSG00000036225.15, intron 1 of 4) protein_coding-intron (ENSMUSG00000036225.15, intron 1 of 4) 26235 ENSMUSG00000036225.15 ENSMUSG00000036225 ENSMUST00000234685 Kctd1 protein_coding Interval_69502 chr16 93911020 93911724 + 0 NA Intergenic Intergenic 18631 ENSMUSG00000022945.12 ENSMUSG00000022945 ENSMUST00000128316 Chaf1b protein_coding Interval_157263 chr8 68786885 68787219 + 0 NA Intergenic Intergenic -11815 ENSMUSG00000081745.1 ENSMUSG00000081745 ENSMUST00000121595 Gm15549 processed_pseudogene Interval_125359 chr5 66415079 66417441 + 0 NA intron (ENSMUSG00000029207.16, intron 5 of 5) protein_coding-intron (ENSMUSG00000029207.16, intron 5 of 17) 15866 ENSMUSG00000106732.1 ENSMUSG00000106732 ENSMUST00000202492 Gm43792 TEC Interval_65454 chr16 22411460 22413697 + 0 NA TTS (ENSMUSG00000013089.15) protein_coding-TTS (ENSMUSG00000013089.15) -10749 ENSMUSG00000013089.15 ENSMUSG00000013089 ENSMUST00000170393 Etv5 protein_coding Interval_30006 chr11 88650924 88651095 + 0 NA intron (ENSMUSG00000069769.13, intron 5 of 5) protein_coding-intron (ENSMUSG00000069769.13, intron 5 of 13) -60862 ENSMUSG00000069769.13 ENSMUSG00000069769 ENSMUST00000126293 Msi2 protein_coding Interval_48407 chr13 98836491 98837279 + 0 NA Intergenic Intergenic 20133 ENSMUSG00000114719.1 ENSMUSG00000114719 ENSMUST00000225468 Gm18134 processed_pseudogene Interval_170226 chr9 106304577 106304846 + 0 NA intron (ENSMUSG00000023345.17, intron 2 of 5) protein_coding-intron (ENSMUSG00000023345.17, intron 7 of 10) 23101 ENSMUSG00000023345.17 ENSMUSG00000023345 ENSMUST00000186366 Poc1a protein_coding Interval_5904 chr1 93114781 93115762 + 0 NA Intergenic Intergenic 8832 ENSMUSG00000101378.1 ENSMUSG00000101378 ENSMUST00000191586 Gm28086 lincRNA Interval_53042 chr14 53794962 53795841 + 0 NA promoter-TSS (ENSMUSG00000087666.3) TR_V_gene-promoter-TSS (ENSMUSG00000087666.3) 44 ENSMUSG00000087666.3 ENSMUSG00000087666 ENSMUST00000103671 Trav13-5 TR_V_gene Interval_170576 chr9 108972463 108972868 + 0 NA intron (ENSMUSG00000025650.13, intron 11 of 43) protein_coding-intron (ENSMUSG00000025650.13, intron 71 of 117) 2743 ENSMUSG00000076142.1 ENSMUSG00000076142 ENSMUST00000102188 Mir711 miRNA Interval_83285 chr18 83517245 83517992 + 0 NA intron (ENSMUSG00000118175.1, intron 2 of 2) lincRNA-intron (ENSMUSG00000118175.1, intron 2 of 2) 7686 ENSMUSG00000118175.1 ENSMUSG00000118175 ENSMUST00000237450 Gm50416 lincRNA Interval_154976 chr8 25437294 25438643 + 0 NA Intergenic Intergenic -2650 ENSMUSG00000110017.1 ENSMUSG00000110017 ENSMUST00000211157 Gm45237 lincRNA Interval_131546 chr5 138005741 138006273 + 0 NA Intergenic Intergenic -11412 ENSMUSG00000100543.1 ENSMUSG00000100543 ENSMUST00000188304 Gm29127 processed_pseudogene Interval_134214 chr6 23089219 23091236 + 0 NA intron (ENSMUSG00000029695.13, intron 18 of 23) protein_coding-intron (ENSMUSG00000029695.13, intron 18 of 23) 42689 ENSMUSG00000029695.13 ENSMUSG00000029695 ENSMUST00000152280 Aass protein_coding Interval_61246 chr15 80208580 80208943 + 0 NA intron (ENSMUSG00000042428.6, intron 1 of 1) protein_coding-intron (ENSMUSG00000042428.6, intron 1 of 1) 19653 ENSMUSG00000115962.1 ENSMUSG00000115962 ENSMUST00000231034 4930588D02Rik TEC Interval_142197 chr6 138153086 138153353 + 0 NA intron (ENSMUSG00000008540.11, intron 2 of 2) protein_coding-intron (ENSMUSG00000008540.11, intron 3 of 3) 12665 ENSMUSG00000008540.11 ENSMUSG00000008540 ENSMUST00000125810 Mgst1 protein_coding Interval_19635 chr10 106518872 106519088 + 0 NA intron (ENSMUSG00000053825.15, intron 2 of 31) protein_coding-intron (ENSMUSG00000053825.15, intron 2 of 31) 16243 ENSMUSG00000108029.1 ENSMUSG00000108029 ENSMUST00000204688 Olfr1556-ps1 unprocessed_pseudogene Interval_483 chr1 6270246 6270466 + 0 NA promoter-TSS (ENSMUSG00000025907.14) protein_coding-promoter-TSS (ENSMUSG00000025907.14) 42354 ENSMUSG00000025907.14 ENSMUSG00000025907 ENSMUST00000159656 Rb1cc1 protein_coding Interval_106698 chr3 99160214 99161425 + 0 NA intron (ENSMUSG00000004233.14, intron 1 of 3) protein_coding-intron (ENSMUSG00000004233.14, intron 1 of 5) 16216 ENSMUSG00000105472.1 ENSMUSG00000105472 ENSMUST00000196770 Gm43024 sense_intronic Interval_113435 chr4 54979708 54981124 + 0 NA intron (ENSMUSG00000060206.11, intron 1 of 12) protein_coding-intron (ENSMUSG00000060206.11, intron 1 of 12) 35368 ENSMUSG00000060206.11 ENSMUSG00000060206 ENSMUST00000079605 Zfp462 protein_coding Interval_167696 chr9 72097313 72097764 + 0 NA intron (ENSMUSG00000032228.16, intron 3 of 19) protein_coding-intron (ENSMUSG00000032228.16, intron 3 of 19) 14113 ENSMUSG00000032228.16 ENSMUSG00000032228 ENSMUST00000184806 Tcf12 protein_coding Interval_53481 chr14 57766739 57767521 + 0 NA Intergenic Intergenic -21009 ENSMUSG00000021959.16 ENSMUSG00000021959 ENSMUST00000173077 Lats2 protein_coding Interval_21691 chr11 3729724 3729992 + 0 NA intron (ENSMUSG00000020435.17, intron 2 of 2) protein_coding-intron (ENSMUSG00000020435.17, intron 2 of 13) -31532 ENSMUSG00000083015.1 ENSMUSG00000083015 ENSMUST00000117960 Gm16518 processed_pseudogene Interval_51910 chr14 33759294 33760411 + 0 NA Intergenic Intergenic 47189 ENSMUSG00000115134.1 ENSMUSG00000115134 ENSMUST00000227984 Gm49108 lincRNA Interval_7167 chr1 127408873 127409835 + 0 NA intron (ENSMUSG00000036155.13, intron 9 of 15) protein_coding-intron (ENSMUSG00000036155.13, intron 11 of 17) 2578 ENSMUSG00000103390.1 ENSMUSG00000103390 ENSMUST00000195573 Gm38301 TEC Interval_5478 chr1 89133229 89133797 + 0 NA intron (ENSMUSG00000036206.12, intron 2 of 5) protein_coding-intron (ENSMUSG00000036206.12, intron 2 of 5) 36440 ENSMUSG00000102700.1 ENSMUSG00000102700 ENSMUST00000195426 Gm38312 TEC Interval_107517 chr3 108256361 108257618 + 0 NA promoter-TSS (ENSMUSG00000068749.9) protein_coding-promoter-TSS (ENSMUSG00000068749.9) -4 ENSMUSG00000085102.1 ENSMUSG00000085102 ENSMUST00000125852 1700010K24Rik antisense Interval_130238 chr5 125140671 125141838 + 0 NA intron (ENSMUSG00000029478.16, intron 1 of 47) protein_coding-intron (ENSMUSG00000029478.16, intron 1 of 46) 54413 ENSMUSG00000106663.1 ENSMUSG00000106663 ENSMUST00000198978 Gm42839 antisense Interval_61631 chr15 83044499 83047396 + 0 NA Intergenic Intergenic -22864 ENSMUSG00000058099.16 ENSMUSG00000058099 ENSMUST00000231204 Nfam1 protein_coding Interval_98701 chr2 154407187 154408634 + 0 NA promoter-TSS (ENSMUSG00000027488.12) protein_coding-promoter-TSS (ENSMUSG00000027488.12) 70 ENSMUSG00000027488.12 ENSMUSG00000027488 ENSMUST00000133018 Snta1 protein_coding Interval_82475 chr18 74314270 74314701 + 0 NA intron (ENSMUSG00000035394.11, intron 7 of 8) protein_coding-intron (ENSMUSG00000035394.11, intron 6 of 7) -10554 ENSMUSG00000095419.1 ENSMUSG00000095419 ENSMUST00000122178 Gm14328 processed_pseudogene Interval_126574 chr5 90353109 90354294 + 0 NA intron (ENSMUSG00000055204.15, intron 1 of 26) protein_coding-intron (ENSMUSG00000055204.15, intron 1 of 33) 12484 ENSMUSG00000055204.15 ENSMUSG00000055204 ENSMUST00000202226 Ankrd17 protein_coding Interval_112807 chr4 45163524 45164201 + 0 NA Intergenic Intergenic -21013 ENSMUSG00000035615.12 ENSMUSG00000035615 ENSMUST00000107804 Frmpd1 protein_coding Interval_142530 chr6 143104070 143104422 + 0 NA Intergenic Intergenic -4156 ENSMUSG00000030279.15 ENSMUSG00000030279 ENSMUST00000205079 C2cd5 protein_coding Interval_81436 chr18 60740198 60741509 + 0 NA intron (ENSMUSG00000054008.9, intron 1 of 14) protein_coding-intron (ENSMUSG00000054008.9, intron 1 of 1) -6245 ENSMUSG00000024608.11 ENSMUSG00000024608 ENSMUST00000122279 Rps14 protein_coding Interval_58632 chr15 36702171 36703087 + 0 NA Intergenic Intergenic -6964 ENSMUSG00000115127.1 ENSMUSG00000115127 ENSMUST00000226482 Gm46515 lincRNA Interval_15194 chr10 43278045 43278427 + 0 NA intron (ENSMUSG00000038240.13, intron 1 of 7) protein_coding-intron (ENSMUSG00000038240.13, intron 1 of 7) -41124 ENSMUSG00000089673.1 ENSMUSG00000089673 ENSMUST00000159442 Gm16546 processed_pseudogene Interval_101413 chr2 181149936 181150178 + 0 NA intron (ENSMUSG00000016349.10, intron 5 of 7) protein_coding-intron (ENSMUSG00000016349.10, intron 5 of 7) 6957 ENSMUSG00000016349.10 ENSMUSG00000016349 ENSMUST00000055990 Eef1a2 protein_coding Interval_29923 chr11 87770692 87771666 + 0 NA intron (ENSMUSG00000034156.16, intron 13 of 30) protein_coding-intron (ENSMUSG00000034156.16, intron 14 of 31) -10396 ENSMUSG00000034156.16 ENSMUSG00000034156 ENSMUST00000154758 Tspoap1 protein_coding Interval_17164 chr10 73105710 73106181 + 0 NA intron (ENSMUSG00000052613.16, intron 1 of 1) protein_coding-intron (ENSMUSG00000052613.16, intron 1 of 13) -19240 ENSMUSG00000111994.1 ENSMUSG00000111994 ENSMUST00000219920 A330049N07Rik lincRNA Interval_101758 chr3 9439639 9440082 + 0 NA exon (ENSMUSG00000040209.12, exon 8 of 9) protein_coding-exon (ENSMUSG00000040209.12, exon 8 of 9) 36780 ENSMUSG00000097365.7 ENSMUSG00000097365 ENSMUST00000181930 C030034L19Rik lincRNA Interval_88105 chr19 59168859 59170340 + 0 NA intron (ENSMUSG00000006270.7, intron 1 of 2) protein_coding-intron (ENSMUSG00000006270.7, intron 1 of 2) -2619 ENSMUSG00000006270.7 ENSMUSG00000006270 ENSMUST00000173710 Vax1 protein_coding Interval_13450 chr10 18363497 18364668 + 0 NA intron (ENSMUSG00000039835.16, intron 1 of 6) protein_coding-intron (ENSMUSG00000039835.16, intron 1 of 6) -26841 ENSMUSG00000111313.1 ENSMUSG00000111313 ENSMUST00000213578 Gm18942 processed_pseudogene Interval_121247 chr4 154368518 154369890 + 0 NA intron (ENSMUSG00000039410.16, intron 3 of 15) protein_coding-intron (ENSMUSG00000039410.16, intron 3 of 16) 33077 ENSMUSG00000097871.1 ENSMUSG00000097871 ENSMUST00000181143 B230104I21Rik lincRNA Interval_174405 chrX 151472619 151473223 + 0 NA Intergenic Intergenic 20348 ENSMUSG00000082423.1 ENSMUSG00000082423 ENSMUST00000117602 Gm15148 processed_pseudogene Interval_129774 chr5 122263938 122265396 + 0 NA promoter-TSS (ENSMUSG00000038593.18) protein_coding-promoter-TSS (ENSMUSG00000038593.18) -252 ENSMUSG00000038593.18 ENSMUSG00000038593 ENSMUST00000177148 Tctn1 protein_coding Interval_95623 chr2 112998005 112998497 + 0 NA intron (ENSMUSG00000057378.15, intron 1 of 1) protein_coding-intron (ENSMUSG00000057378.15, intron 2 of 102) -287481 ENSMUSG00000041255.2 ENSMUSG00000041255 ENSMUST00000040856 Tmco5b protein_coding Interval_47550 chr13 87857010 87857510 + 0 NA Intergenic Intergenic 30722 ENSMUSG00000114674.1 ENSMUSG00000114674 ENSMUST00000224915 Gm19239 processed_pseudogene Interval_109167 chr3 137470987 137471275 + 0 NA Intergenic Intergenic 81491 ENSMUSG00000055138.10 ENSMUSG00000055138 ENSMUST00000198629 Gm4861 lincRNA Interval_40995 chr12 110498513 110500021 + 0 NA intron (ENSMUSG00000017843.14, intron 1 of 11) protein_coding-intron (ENSMUSG00000017843.14, intron 1 of 13) -13651 ENSMUSG00000113585.1 ENSMUSG00000113585 ENSMUST00000222863 Gm19605 processed_transcript Interval_131475 chr5 137466197 137466445 + 0 NA intron (ENSMUSG00000079173.11, intron 11 of 86) protein_coding-intron (ENSMUSG00000079173.11, intron 12 of 87) 19495 ENSMUSG00000029711.13 ENSMUSG00000029711 ENSMUST00000111039 Epo protein_coding Interval_45053 chr13 51759116 51759871 + 0 NA intron (ENSMUSG00000021451.16, intron 2 of 16) protein_coding-intron (ENSMUSG00000021451.16, intron 2 of 15) -5801 ENSMUSG00000092648.1 ENSMUSG00000092648 ENSMUST00000174907 Gm23566 miRNA Interval_14243 chr10 29474107 29474678 + 0 NA intron (ENSMUSG00000019880.10, intron 2 of 3) protein_coding-intron (ENSMUSG00000019880.10, intron 4 of 4) 19029 ENSMUSG00000110986.1 ENSMUSG00000110986 ENSMUST00000216122 Gm20276 TEC Interval_99542 chr2 163054218 163055167 + 0 NA promoter-TSS (ENSMUSG00000017861.11) protein_coding-promoter-TSS (ENSMUSG00000017861.11) -13398 ENSMUSG00000099091.1 ENSMUSG00000099091 ENSMUST00000184607 Mir7003 miRNA Interval_54582 chr14 70801024 70801337 + 0 NA Intergenic Intergenic 25301 ENSMUSG00000022102.13 ENSMUSG00000022102 ENSMUST00000164691 Dok2 protein_coding Interval_125784 chr5 74144124 74145135 + 0 NA Intergenic Intergenic 31421 ENSMUSG00000106735.1 ENSMUSG00000106735 ENSMUST00000200757 A330058E17Rik TEC Interval_113627 chr4 57101350 57102365 + 0 NA intron (ENSMUSG00000028434.12, intron 1 of 9) protein_coding-intron (ENSMUSG00000028434.12, intron 2 of 15) -31298 ENSMUSG00000028434.12 ENSMUSG00000028434 ENSMUST00000133859 Epb41l4b protein_coding Interval_93772 chr2 76762627 76762876 + 0 NA exon (ENSMUSG00000051747.15, exon 137 of 191) protein_coding-exon (ENSMUSG00000051747.15, exon 137 of 191) 39975 ENSMUSG00000086354.2 ENSMUSG00000086354 ENSMUST00000156809 Gm13938 antisense Interval_122605 chr5 24164776 24165469 + 0 NA exon (ENSMUSG00000048439.15, exon 1 of 7) protein_coding-exon (ENSMUSG00000048439.15, exon 1 of 7) -2386 ENSMUSG00000048439.15 ENSMUSG00000048439 ENSMUST00000124150 Nupl2 protein_coding Interval_72629 chr17 31183354 31184211 + 0 NA intron (ENSMUSG00000024034.13, intron 11 of 11) protein_coding-intron (ENSMUSG00000024034.13, intron 11 of 11) 14389 ENSMUSG00000024034.13 ENSMUSG00000024034 ENSMUST00000236793 Tmprss3 protein_coding Interval_120729 chr4 150307431 150307747 + 0 NA intron (ENSMUSG00000039852.17, intron 1 of 22) protein_coding-intron (ENSMUSG00000039852.17, intron 1 of 22) 7847 ENSMUSG00000085787.3 ENSMUSG00000085787 ENSMUST00000136346 Gm13092 processed_pseudogene Interval_158085 chr8 78623724 78625553 + 0 NA intron (ENSMUSG00000031684.11, intron 1 of 2) protein_coding-intron (ENSMUSG00000031684.11, intron 5 of 11) 20344 ENSMUSG00000110244.1 ENSMUSG00000110244 ENSMUST00000211775 Gm2253 processed_pseudogene Interval_146085 chr7 43780578 43781482 + 0 NA promoter-TSS (ENSMUSG00000030693.10) protein_coding-promoter-TSS (ENSMUSG00000030693.10) -5 ENSMUSG00000030693.10 ENSMUSG00000030693 ENSMUST00000014058 Klk10 protein_coding Interval_40885 chr12 109083272 109085760 + 0 NA Intergenic Intergenic -13711 ENSMUSG00000113306.1 ENSMUSG00000113306 ENSMUST00000223357 Mif-ps7 processed_pseudogene Interval_1248 chr1 18131611 18131877 + 0 NA intron (ENSMUSG00000025774.14, intron 3 of 6) protein_coding-intron (ENSMUSG00000025774.14, intron 3 of 7) 14152 ENSMUSG00000025774.14 ENSMUSG00000025774 ENSMUST00000115344 Crisp4 protein_coding Interval_11832 chr1 186032828 186033048 + 0 NA Intergenic Intergenic 79435 ENSMUSG00000103056.1 ENSMUSG00000103056 ENSMUST00000195813 Gm38268 TEC Interval_142101 chr6 137153038 137153259 + 0 NA intron (ENSMUSG00000030222.13, intron 2 of 2) protein_coding-intron (ENSMUSG00000030222.13, intron 2 of 4) -6219 ENSMUSG00000107567.1 ENSMUSG00000107567 ENSMUST00000203679 4930480K02Rik TEC Interval_95324 chr2 106535481 106536033 + 0 NA Intergenic Intergenic -12654 ENSMUSG00000087226.1 ENSMUSG00000087226 ENSMUST00000130634 Gm14015 lincRNA Interval_51501 chr14 28557898 28558067 + 0 NA Intergenic Intergenic -46590 ENSMUSG00000097002.1 ENSMUSG00000097002 ENSMUST00000180668 Gm2670 antisense Interval_169298 chr9 96229885 96230993 + 0 NA intron (ENSMUSG00000032411.15, intron 3 of 9) protein_coding-intron (ENSMUSG00000032411.15, intron 3 of 12) 11309 ENSMUSG00000103611.1 ENSMUSG00000103611 ENSMUST00000192006 Gm37195 TEC Interval_44301 chr13 43488877 43489281 + 0 NA Intergenic Intergenic -10172 ENSMUSG00000038546.9 ENSMUSG00000038546 ENSMUST00000222023 Ranbp9 protein_coding Interval_17010 chr10 70408168 70408582 + 0 NA Intergenic Intergenic 7206 ENSMUSG00000112884.1 ENSMUSG00000112884 ENSMUST00000219437 Gm47946 lincRNA Interval_50531 chr14 14710353 14710705 + 0 NA intron (ENSMUSG00000021733.11, intron 1 of 23) protein_coding-intron (ENSMUSG00000021733.11, intron 1 of 24) 7450 ENSMUSG00000021733.11 ENSMUSG00000021733 ENSMUST00000225613 Slc4a7 protein_coding Interval_156374 chr8 47778987 47779417 + 0 NA Intergenic Intergenic 5647 ENSMUSG00000110539.1 ENSMUSG00000110539 ENSMUST00000211965 Gm45864 lincRNA Interval_130314 chr5 125602820 125603036 + 0 NA intron (ENSMUSG00000070498.3, intron 1 of 8) protein_coding-intron (ENSMUSG00000070498.3, intron 1 of 8) 71154 ENSMUSG00000070498.3 ENSMUSG00000070498 ENSMUST00000184422 Tmem132b protein_coding Interval_12738 chr10 4607089 4607265 + 0 NA Intergenic Intergenic -4416 ENSMUSG00000019768.16 ENSMUSG00000019768 ENSMUST00000137012 Esr1 protein_coding Interval_124699 chr5 53407369 53407817 + 0 NA Intergenic Intergenic -10980 ENSMUSG00000088646.1 ENSMUSG00000088646 ENSMUST00000158021 Gm26486 rRNA Interval_119204 chr4 136180033 136181424 + 0 NA promoter-TSS (ENSMUSG00000018983.9) protein_coding-promoter-TSS (ENSMUSG00000018983.9) -55 ENSMUSG00000018983.9 ENSMUSG00000018983 ENSMUST00000149750 E2f2 protein_coding Interval_79608 chr18 33987468 33988818 + 0 NA intron (ENSMUSG00000024376.7, intron 2 of 2) protein_coding-intron (ENSMUSG00000024376.7, intron 2 of 23) 18823 ENSMUSG00000024376.7 ENSMUSG00000024376 ENSMUST00000237971 Epb41l4a protein_coding Interval_118359 chr4 130873400 130873737 + 0 NA Intergenic Intergenic -15688 ENSMUSG00000077381.1 ENSMUSG00000077381 ENSMUST00000104193 Gm22660 snoRNA Interval_172069 chrX 5467827 5468829 + 0 NA exon (ENSMUSG00000044597.4, exon 1 of 1) protein_coding-exon (ENSMUSG00000044597.4, exon 1 of 1) 937 ENSMUSG00000044597.4 ENSMUSG00000044597 ENSMUST00000058404 Mycs protein_coding Interval_144262 chr7 24103190 24103529 + 0 NA intron (ENSMUSG00000057101.8, intron 5 of 5) protein_coding-intron (ENSMUSG00000057101.8, intron 4 of 4) 13241 ENSMUSG00000108703.1 ENSMUSG00000108703 ENSMUST00000136923 Gm44793 antisense Interval_117723 chr4 125807013 125808123 + 0 NA Intergenic Intergenic 114849 ENSMUSG00000085562.7 ENSMUSG00000085562 ENSMUST00000144539 2610028E06Rik lincRNA Interval_13606 chr10 20160768 20162300 + 0 NA intron (ENSMUSG00000019996.17, intron 1 of 6) protein_coding-intron (ENSMUSG00000019996.17, intron 1 of 17) -9454 ENSMUSG00000019996.17 ENSMUSG00000019996 ENSMUST00000216308 Map7 protein_coding Interval_25264 chr11 45963908 45964843 + 0 NA Intergenic Intergenic -9218 ENSMUSG00000011254.16 ENSMUSG00000011254 ENSMUST00000131182 Thg1l protein_coding Interval_147506 chr7 67828067 67828526 + 0 NA intron (ENSMUSG00000109464.1, intron 2 of 2) lincRNA-intron (ENSMUSG00000109464.1, intron 2 of 2) 9046 ENSMUSG00000109464.1 ENSMUSG00000109464 ENSMUST00000208898 Gm34350 lincRNA Interval_151859 chr7 127154701 127155999 + 0 NA exon (ENSMUSG00000108362.1, exon 1 of 2) processed_pseudogene-exon (ENSMUSG00000108362.1, exon 1 of 2) 281 ENSMUSG00000108362.1 ENSMUSG00000108362 ENSMUST00000206027 Gm18561 processed_pseudogene Interval_169527 chr9 98896871 98897276 + 0 NA Intergenic Intergenic -6046 ENSMUSG00000074123.1 ENSMUSG00000074123 ENSMUST00000098460 7420426K07Rik protein_coding Interval_166251 chr9 57800436 57800986 + 0 NA intron (ENSMUSG00000004661.15, intron 4 of 8) protein_coding-intron (ENSMUSG00000004661.15, intron 3 of 7) -4490 ENSMUSG00000004661.15 ENSMUSG00000004661 ENSMUST00000167670 Arid3b protein_coding Interval_144025 chr7 19031336 19032362 + 0 NA exon (ENSMUSG00000023118.15, exon 5 of 5) protein_coding-exon (ENSMUSG00000023118.15, exon 5 of 5) 7429 ENSMUSG00000023118.15 ENSMUSG00000023118 ENSMUST00000131230 Sympk protein_coding Interval_78509 chr18 13868084 13868836 + 0 NA intron (ENSMUSG00000024420.9, intron 2 of 2) protein_coding-intron (ENSMUSG00000024420.9, intron 3 of 7) 7866 ENSMUSG00000024420.9 ENSMUSG00000024420 ENSMUST00000234025 Zfp521 protein_coding Interval_96605 chr2 126363195 126363421 + 0 NA intron (ENSMUSG00000060131.11, intron 20 of 27) protein_coding-intron (ENSMUSG00000060131.11, intron 20 of 27) -93945 ENSMUSG00000089480.1 ENSMUSG00000089480 ENSMUST00000158855 Gm24739 misc_RNA Interval_158066 chr8 78513152 78513488 + 0 NA intron (ENSMUSG00000031684.11, intron 1 of 9) protein_coding-intron (ENSMUSG00000031684.11, intron 1 of 11) 3974 ENSMUSG00000031684.11 ENSMUSG00000031684 ENSMUST00000210132 Slc10a7 protein_coding Interval_81584 chr18 61845085 61845521 + 0 NA intron (ENSMUSG00000032735.15, intron 7 of 23) protein_coding-intron (ENSMUSG00000032735.15, intron 6 of 22) -58692 ENSMUSG00000033032.15 ENSMUSG00000033032 ENSMUST00000147278 Afap1l1 protein_coding Interval_132346 chr5 144357583 144358814 + 0 NA promoter-TSS (ENSMUSG00000038859.7) protein_coding-promoter-TSS (ENSMUSG00000038859.7) 275 ENSMUSG00000104600.4 ENSMUSG00000104600 ENSMUST00000196370 Dmrt1i sense_intronic Interval_125866 chr5 75149963 75150487 + 0 NA Intergenic Intergenic 3428 ENSMUSG00000106760.1 ENSMUSG00000106760 ENSMUST00000202475 Gm42802 antisense Interval_4043 chr1 66780971 66781610 + 0 NA intron (ENSMUSG00000026004.15, intron 3 of 3) protein_coding-intron (ENSMUSG00000026004.15, intron 2 of 13) -2623 ENSMUSG00000082057.1 ENSMUSG00000082057 ENSMUST00000118992 Gm15789 processed_pseudogene Interval_161576 chr8 121311180 121311693 + 0 NA intron (ENSMUSG00000097384.1, intron 1 of 1) protein_coding-intron (ENSMUSG00000092329.1, intron 1 of 15) 45400 ENSMUSG00000097384.1 ENSMUSG00000097384 ENSMUST00000181200 Gm26815 lincRNA Interval_2826 chr1 45925157 45926569 + 0 NA promoter-TSS (ENSMUSG00000025993.10) protein_coding-promoter-TSS (ENSMUSG00000025993.10) -254 ENSMUSG00000025993.10 ENSMUSG00000025993 ENSMUST00000186755 Slc40a1 protein_coding Interval_8706 chr1 149347472 149347757 + 0 NA Intergenic Intergenic 62331 ENSMUSG00000102314.1 ENSMUSG00000102314 ENSMUST00000194210 Gm37630 TEC Interval_50139 chr14 8220160 8220493 + 0 NA intron (ENSMUSG00000021752.13, intron 2 of 2) protein_coding-intron (ENSMUSG00000021752.13, intron 2 of 2) 5824 ENSMUSG00000021752.13 ENSMUSG00000021752 ENSMUST00000170111 Kctd6 protein_coding Interval_169198 chr9 95456513 95456738 + 0 NA TTS (ENSMUSG00000032407.14) protein_coding-TTS (ENSMUSG00000032407.14) 30995 ENSMUSG00000101459.1 ENSMUSG00000101459 ENSMUST00000190263 Gm19193 processed_pseudogene Interval_34733 chr12 9023617 9023986 + 0 NA TTS (ENSMUSG00000066643.12) protein_coding-TTS (ENSMUSG00000066643.12) -6226 ENSMUSG00000066637.2 ENSMUSG00000066637 ENSMUST00000219470 Ttc32 protein_coding Interval_82192 chr18 68721226 68722644 + 0 NA Intergenic Intergenic -17465 ENSMUSG00000099300.1 ENSMUSG00000099300 ENSMUST00000183541 Mir6356 miRNA Interval_82512 chr18 74801402 74803262 + 0 NA intron (ENSMUSG00000036880.10, intron 8 of 9) protein_coding-intron (ENSMUSG00000036880.10, intron 8 of 9) 8949 ENSMUSG00000036880.10 ENSMUSG00000036880 ENSMUST00000237306 Acaa2 protein_coding Interval_132654 chr5 146974336 146974723 + 0 NA Intergenic Intergenic -10729 ENSMUSG00000016510.11 ENSMUSG00000016510 ENSMUST00000140526 Mtif3 protein_coding Interval_21809 chr11 4477183 4477455 + 0 NA Intergenic Intergenic 11047 ENSMUSG00000034354.17 ENSMUSG00000034354 ENSMUST00000144242 Mtmr3 protein_coding Interval_26941 chr11 61728144 61728378 + 0 NA Intergenic Intergenic -8315 ENSMUSG00000042371.12 ENSMUSG00000042371 ENSMUST00000148584 Slc5a10 protein_coding Interval_53937 chr14 63512435 63512947 + 0 NA Intergenic Intergenic 15468 ENSMUSG00000035078.6 ENSMUSG00000035078 ENSMUST00000058679 Mtmr9 protein_coding Interval_128309 chr5 112469063 112470325 + 0 NA intron (ENSMUSG00000058153.15, intron 5 of 14) protein_coding-intron (ENSMUSG00000058153.15, intron 5 of 16) 20268 ENSMUSG00000072722.2 ENSMUSG00000072722 ENSMUST00000100882 Gm6588 protein_coding Interval_11630 chr1 183445266 183445560 + 0 NA Intergenic Intergenic 24758 ENSMUSG00000104022.1 ENSMUSG00000104022 ENSMUST00000192860 Gm37214 sense_intronic Interval_118326 chr4 130307318 130309660 + 0 NA promoter-TSS (ENSMUSG00000028773.8) protein_coding-promoter-TSS (ENSMUSG00000028773.8) -106 ENSMUSG00000028773.8 ENSMUSG00000028773 ENSMUST00000070532 Fabp3 protein_coding Interval_6975 chr1 121480751 121481306 + 0 NA intron (ENSMUSG00000026339.18, intron 14 of 23) protein_coding-intron (ENSMUSG00000026339.18, intron 14 of 23) 12175 ENSMUSG00000085857.1 ENSMUSG00000085857 ENSMUST00000152863 Gm15392 antisense Interval_142083 chr6 137017486 137018508 + 0 NA Intergenic Intergenic 31401 ENSMUSG00000107734.1 ENSMUSG00000107734 ENSMUST00000203175 Gm30055 TEC Interval_96945 chr2 129783652 129784104 + 0 NA Intergenic Intergenic -16639 ENSMUSG00000037885.18 ENSMUSG00000037885 ENSMUST00000166282 Stk35 protein_coding Interval_88717 chr2 9957213 9957673 + 0 NA intron (ENSMUSG00000025782.12, intron 2 of 6) protein_coding-intron (ENSMUSG00000025782.12, intron 2 of 6) -15692 ENSMUSG00000025782.12 ENSMUSG00000025782 ENSMUST00000114907 Taf3 protein_coding Interval_49650 chr13 113801650 113802255 + 0 NA intron (ENSMUSG00000042348.10, intron 1 of 3) protein_coding-intron (ENSMUSG00000042348.10, intron 1 of 4) 7359 ENSMUSG00000042348.10 ENSMUSG00000042348 ENSMUST00000224068 Arl15 protein_coding Interval_106201 chr3 94559620 94560471 + 0 NA intron (ENSMUSG00000028136.15, intron 1 of 10) protein_coding-intron (ENSMUSG00000028136.15, intron 2 of 11) 1987 ENSMUSG00000028136.15 ENSMUSG00000028136 ENSMUST00000198902 Snx27 protein_coding Interval_163031 chr9 14676327 14677657 + 0 NA Intergenic Intergenic -2978 ENSMUSG00000111330.1 ENSMUSG00000111330 ENSMUST00000214414 Gm19790 processed_pseudogene Interval_6688 chr1 118759450 118760001 + 0 NA Intergenic Intergenic -50411 ENSMUSG00000100040.1 ENSMUSG00000100040 ENSMUST00000190981 Gm28467 processed_pseudogene Interval_29099 chr11 80323125 80325292 + 0 NA TTS (ENSMUSG00000017692.8) protein_coding-TTS (ENSMUSG00000017692.8) -22195 ENSMUSG00000017692.8 ENSMUSG00000017692 ENSMUST00000157016 Rhbdl3 protein_coding Interval_50572 chr14 15792403 15793147 + 0 NA TTS (ENSMUSG00000114586.1) lincRNA-TTS (ENSMUSG00000114586.1) 19086 ENSMUSG00000114586.1 ENSMUSG00000114586 ENSMUST00000225565 Gm31804 lincRNA Interval_150764 chr7 114192237 114193348 + 0 NA Intergenic Intergenic 16296 ENSMUSG00000110407.1 ENSMUSG00000110407 ENSMUST00000211484 Gm45454 processed_pseudogene Interval_169909 chr9 102879117 102879314 + 0 NA intron (ENSMUSG00000032547.12, intron 5 of 13) protein_coding-intron (ENSMUSG00000032547.12, intron 6 of 14) -19340 ENSMUSG00000032547.12 ENSMUSG00000032547 ENSMUST00000177274 Ryk protein_coding Interval_153371 chr7 144102328 144103169 + 0 NA intron (ENSMUSG00000037541.22, intron 8 of 17) protein_coding-intron (ENSMUSG00000037541.22, intron 9 of 22) 8337 ENSMUSG00000109500.1 ENSMUSG00000109500 ENSMUST00000207456 Gm44999 TEC Interval_91025 chr2 34494150 34495348 + 0 NA intron (ENSMUSG00000038696.14, intron 3 of 5) protein_coding-intron (ENSMUSG00000038696.14, intron 3 of 10) -58167 ENSMUSG00000083233.1 ENSMUSG00000083233 ENSMUST00000121991 Gm13406 processed_pseudogene Interval_148652 chr7 83851778 83852486 + 0 NA Intergenic Intergenic 13349 ENSMUSG00000109163.1 ENSMUSG00000109163 ENSMUST00000208647 3110009M11Rik processed_pseudogene Interval_158933 chr8 88055214 88055443 + 0 NA intron (ENSMUSG00000110719.1, intron 4 of 4) unitary_pseudogene-intron (ENSMUSG00000110719.1, intron 4 of 4) 15482 ENSMUSG00000110719.1 ENSMUSG00000110719 ENSMUST00000212350 Gm2716 unitary_pseudogene Interval_136450 chr6 54588327 54589363 + 0 NA intron (ENSMUSG00000038074.16, intron 2 of 4) protein_coding-intron (ENSMUSG00000038074.16, intron 2 of 3) 4303 ENSMUSG00000038074.16 ENSMUSG00000038074 ENSMUST00000154907 Fkbp14 protein_coding Interval_72120 chr17 28155091 28156211 + 0 NA intron (ENSMUSG00000038677.14, intron 3 of 21) protein_coding-intron (ENSMUSG00000038677.14, intron 3 of 21) 13333 ENSMUSG00000038677.14 ENSMUSG00000038677 ENSMUST00000142170 Scube3 protein_coding Interval_77522 chr17 90745595 90745823 + 0 NA intron (ENSMUSG00000024109.18, intron 1 of 12) protein_coding-intron (ENSMUSG00000024109.18, intron 4 of 20) 48297 ENSMUSG00000092549.1 ENSMUSG00000092549 ENSMUST00000173765 Gm20491 processed_pseudogene Interval_47399 chr13 83517754 83518666 + 0 NA intron (ENSMUSG00000005583.16, intron 1 of 2) protein_coding-intron (ENSMUSG00000005583.16, intron 1 of 10) -6081 ENSMUSG00000005583.16 ENSMUSG00000005583 ENSMUST00000197145 Mef2c protein_coding Interval_9786 chr1 162313623 162314739 + 0 NA promoter-TSS (ENSMUSG00000040265.16) protein_coding-promoter-TSS (ENSMUSG00000040265.16) -1911 ENSMUSG00000089933.1 ENSMUSG00000089933 ENSMUST00000160695 Gm16101 processed_pseudogene Interval_172253 chrX 12005167 12007617 + 0 NA Intergenic Intergenic 21924 ENSMUSG00000081947.2 ENSMUSG00000081947 ENSMUST00000117924 Gm14512 processed_pseudogene Interval_27528 chr11 68431276 68432870 + 0 NA promoter-TSS (ENSMUSG00000020901.13) protein_coding-promoter-TSS (ENSMUSG00000020901.13) -43408 ENSMUSG00000020901.13 ENSMUSG00000020901 ENSMUST00000155887 Pik3r5 protein_coding Interval_45217 chr13 53243594 53243937 + 0 NA intron (ENSMUSG00000021464.14, intron 1 of 8) protein_coding-intron (ENSMUSG00000021464.14, intron 1 of 8) 31893 ENSMUSG00000021464.14 ENSMUSG00000021464 ENSMUST00000149299 Ror2 protein_coding Interval_73154 chr17 35134566 35136216 + 0 NA promoter-TSS (ENSMUSG00000024392.17) protein_coding-promoter-TSS (ENSMUSG00000024392.17) -3341 ENSMUSG00000024391.7 ENSMUSG00000024391 ENSMUST00000025249 Apom protein_coding Interval_139354 chr6 99309497 99310777 + 0 NA intron (ENSMUSG00000030067.17, intron 2 of 3) protein_coding-intron (ENSMUSG00000030067.17, intron 1 of 18) 78362 ENSMUSG00000093559.1 ENSMUSG00000093559 ENSMUST00000177278 Gm20705 sense_intronic Interval_169405 chr9 97007164 97007666 + 0 NA intron (ENSMUSG00000046997.5, intron 1 of 1) protein_coding-intron (ENSMUSG00000046997.5, intron 1 of 2) -8551 ENSMUSG00000085541.1 ENSMUSG00000085541 ENSMUST00000124366 Gm16010 antisense Interval_140760 chr6 121103144 121103853 + 0 NA promoter-TSS (ENSMUSG00000051586.17) protein_coding-promoter-TSS (ENSMUSG00000051586.17) -13300 ENSMUSG00000108096.1 ENSMUSG00000108096 ENSMUST00000203344 Minpp1-ps processed_pseudogene Interval_129430 chr5 120129968 120130679 + 0 NA intron (ENSMUSG00000029594.12, intron 11 of 23) protein_coding-intron (ENSMUSG00000029594.12, intron 11 of 23) 8940 ENSMUSG00000097368.2 ENSMUSG00000097368 ENSMUST00000181905 Gm10390 antisense Interval_100435 chr2 168999307 168999627 + 0 NA Intergenic Intergenic -12094 ENSMUSG00000086658.1 ENSMUSG00000086658 ENSMUST00000125121 Gm14260 lincRNA Interval_172662 chrX 41688678 41689990 + 0 NA Intergenic Intergenic -2957 ENSMUSG00000082966.1 ENSMUSG00000082966 ENSMUST00000119873 Gm14614 processed_pseudogene Interval_112679 chr4 44029515 44030019 + 0 NA intron (ENSMUSG00000028478.18, intron 4 of 4) protein_coding-intron (ENSMUSG00000028478.18, intron 4 of 4) 17124 ENSMUSG00000028478.18 ENSMUSG00000028478 ENSMUST00000107845 Clta protein_coding Interval_134486 chr6 29082600 29084567 + 0 NA Intergenic Intergenic 18121 ENSMUSG00000059201.12 ENSMUSG00000059201 ENSMUST00000169505 Lep protein_coding Interval_139737 chr6 108256452 108256666 + 0 NA intron (ENSMUSG00000030102.11, intron 1 of 22) protein_coding-intron (ENSMUSG00000030102.11, intron 4 of 61) -71003 ENSMUSG00000030101.15 ENSMUSG00000030101 ENSMUST00000171697 Sumf1 protein_coding Interval_39109 chr12 85139558 85141589 + 0 NA promoter-TSS (ENSMUSG00000019235.9) protein_coding-promoter-TSS (ENSMUSG00000019235.9) 10677 ENSMUSG00000019235.9 ENSMUSG00000019235 ENSMUST00000223399 Rps6kl1 protein_coding Interval_6372 chr1 106449769 106450495 + 0 NA Intergenic Intergenic 10532 ENSMUSG00000099604.1 ENSMUSG00000099604 ENSMUST00000189471 Gm6651 processed_pseudogene Interval_66172 chr16 32115436 32116578 + 0 NA Intergenic Intergenic 7142 ENSMUSG00000086146.1 ENSMUSG00000086146 ENSMUST00000125829 Gm15729 lincRNA Interval_14054 chr10 26322080 26322529 + 0 NA intron (ENSMUSG00000039089.15, intron 12 of 21) protein_coding-intron (ENSMUSG00000039089.15, intron 12 of 21) -6030 ENSMUSG00000039089.15 ENSMUSG00000039089 ENSMUST00000217699 L3mbtl3 protein_coding Interval_164072 chr9 31294337 31294924 + 0 NA intron (ENSMUSG00000042496.18, intron 1 of 21) protein_coding-intron (ENSMUSG00000042496.18, intron 1 of 6) -13638 ENSMUSG00000111246.1 ENSMUSG00000111246 ENSMUST00000214795 4930517E14Rik lincRNA Interval_113730 chr4 57886166 57886824 + 0 NA intron (ENSMUSG00000089945.13, intron 8 of 8) protein_coding-intron (ENSMUSG00000038729.24, intron 3 of 3) -9000 ENSMUSG00000096195.1 ENSMUSG00000096195 ENSMUST00000179236 Gm26138 snRNA Interval_6526 chr1 114455505 114455859 + 0 NA Intergenic Intergenic -491548 ENSMUSG00000097648.1 ENSMUSG00000097648 ENSMUST00000180837 9330185C12Rik lincRNA Interval_99866 chr2 165391692 165391999 + 0 NA Intergenic Intergenic -3586 ENSMUSG00000017667.9 ENSMUSG00000017667 ENSMUST00000103084 Zfp334 protein_coding Interval_61468 chr15 81802160 81803168 + 0 NA promoter-TSS (ENSMUSG00000022389.15) protein_coding-promoter-TSS (ENSMUSG00000022389.15) -51 ENSMUSG00000097613.1 ENSMUSG00000097613 ENSMUST00000181220 Gm17597 antisense Interval_172792 chrX 49287686 49288557 + 0 NA promoter-TSS (ENSMUSG00000031109.16) protein_coding-promoter-TSS (ENSMUSG00000031109.16) 57116 ENSMUSG00000087369.1 ENSMUSG00000087369 ENSMUST00000144294 Gm14696 lincRNA Interval_72052 chr17 27734932 27736002 + 0 NA intron (ENSMUSG00000086485.2, intron 1 of 2) lincRNA-intron (ENSMUSG00000086485.2, intron 1 of 2) 247 ENSMUSG00000086485.2 ENSMUSG00000086485 ENSMUST00000156950 Gm15458 lincRNA Interval_87552 chr19 53402356 53403723 + 0 NA Intergenic Intergenic 12250 ENSMUSG00000117768.1 ENSMUSG00000117768 ENSMUST00000238029 8030456M14Rik bidirectional_promoter_lncRNA Interval_135693 chr6 43520370 43520730 + 0 NA intron (ENSMUSG00000029735.17, intron 3 of 6) protein_coding-intron (ENSMUSG00000029735.17, intron 5 of 8) 52571 ENSMUSG00000107709.1 ENSMUSG00000107709 ENSMUST00000203260 9430018G01Rik antisense Interval_45750 chr13 57662314 57662787 + 0 NA intron (ENSMUSG00000056222.15, intron 4 of 10) protein_coding-intron (ENSMUSG00000056222.15, intron 2 of 9) 245782 ENSMUSG00000056222.15 ENSMUSG00000056222 ENSMUST00000185905 Spock1 protein_coding Interval_153657 chr8 4324507 4325739 + 0 NA promoter-TSS (ENSMUSG00000023235.14) protein_coding-promoter-TSS (ENSMUSG00000023235.14) -7136 ENSMUSG00000023235.14 ENSMUSG00000023235 ENSMUST00000024004 Ccl25 protein_coding Interval_119738 chr4 139602728 139603271 + 0 NA promoter-TSS (ENSMUSG00000094439.1) protein_coding-promoter-TSS (ENSMUSG00000094439.1) -187 ENSMUSG00000094439.1 ENSMUSG00000094439 ENSMUST00000178644 Gm21969 protein_coding Interval_92881 chr2 68041421 68041700 + 0 NA intron (ENSMUSG00000034780.6, intron 3 of 4) protein_coding-intron (ENSMUSG00000034780.6, intron 3 of 4) -40231 ENSMUSG00000081257.1 ENSMUSG00000081257 ENSMUST00000117875 Gm13607 processed_pseudogene Interval_41566 chr12 116349169 116349383 + 0 NA intron (ENSMUSG00000021171.8, intron 13 of 22) protein_coding-intron (ENSMUSG00000021171.8, intron 13 of 21) 1524 ENSMUSG00000021171.8 ENSMUSG00000021171 ENSMUST00000223150 Esyt2 protein_coding Interval_127276 chr5 102054760 102056325 + 0 NA intron (ENSMUSG00000043940.15, intron 1 of 15) protein_coding-intron (ENSMUSG00000043940.15, intron 1 of 66) 2527 ENSMUSG00000105761.1 ENSMUSG00000105761 ENSMUST00000197792 Gm43787 TEC Interval_71940 chr17 27120625 27121505 + 0 NA exon (ENSMUSG00000042644.9, exon 57 of 58) protein_coding-exon (ENSMUSG00000042644.9, exon 57 of 58) 12558 ENSMUSG00000024208.16 ENSMUSG00000024208 ENSMUST00000119227 Uqcc2 protein_coding Interval_140138 chr6 114730525 114731059 + 0 NA intron (ENSMUSG00000030314.16, intron 16 of 16) protein_coding-intron (ENSMUSG00000030314.16, intron 17 of 18) -7742 ENSMUSG00000107411.1 ENSMUSG00000107411 ENSMUST00000203280 Gm19040 processed_pseudogene Interval_1278 chr1 19056325 19056552 + 0 NA Intergenic Intergenic -6419 ENSMUSG00000099433.1 ENSMUSG00000099433 ENSMUST00000185704 Gm28344 processed_pseudogene Interval_19673 chr10 107712012 107712187 + 0 NA intron (ENSMUSG00000035916.8, intron 4 of 20) protein_coding-intron (ENSMUSG00000035916.8, intron 4 of 44) 7928 ENSMUSG00000035916.8 ENSMUSG00000035916 ENSMUST00000218399 Ptprq protein_coding Interval_88126 chr19 59412076 59413221 + 0 NA Intergenic Intergenic 22864 ENSMUSG00000110210.1 ENSMUSG00000110210 ENSMUST00000211358 Gm33756 lincRNA Interval_115823 chr4 105070919 105071448 + 0 NA intron (ENSMUSG00000028518.8, intron 2 of 8) protein_coding-intron (ENSMUSG00000028518.8, intron 2 of 8) 38707 ENSMUSG00000028518.8 ENSMUSG00000028518 ENSMUST00000030243 Prkaa2 protein_coding Interval_143594 chr7 13022854 13025306 + 0 NA promoter-TSS (ENSMUSG00000005566.14) protein_coding-promoter-TSS (ENSMUSG00000005566.14) 10659 ENSMUSG00000033916.5 ENSMUSG00000033916 ENSMUST00000211369 Chmp2a protein_coding Interval_110723 chr4 7154151 7154485 + 0 NA Intergenic Intergenic -114804 ENSMUSG00000083023.1 ENSMUSG00000083023 ENSMUST00000121663 Gm11804 processed_pseudogene Interval_64745 chr16 14842450 14842727 + 0 NA Intergenic Intergenic -35319 ENSMUSG00000095165.1 ENSMUSG00000095165 ENSMUST00000178877 Gm25547 snRNA Interval_124105 chr5 38346523 38347391 + 0 NA intron (ENSMUSG00000106932.1, intron 2 of 2) lincRNA-intron (ENSMUSG00000106932.1, intron 2 of 2) 2522 ENSMUSG00000106932.1 ENSMUSG00000106932 ENSMUST00000201983 4930487D11Rik lincRNA Interval_22115 chr11 6429396 6430226 + 0 NA intron (ENSMUSG00000041126.16, intron 2 of 3) protein_coding-intron (ENSMUSG00000041126.16, intron 2 of 3) 13499 ENSMUSG00000071866.12 ENSMUSG00000071866 ENSMUST00000213200 Ppia protein_coding Interval_72671 chr17 31462429 31463343 + 0 NA intron (ENSMUSG00000041119.12, intron 8 of 13) protein_coding-intron (ENSMUSG00000041119.12, intron 13 of 18) -1051 ENSMUSG00000118081.1 ENSMUSG00000118081 ENSMUST00000236844 Gm50138 antisense Interval_134491 chr6 29107855 29109215 + 0 NA Intergenic Intergenic 5071 ENSMUSG00000064436.1 ENSMUSG00000064436 ENSMUST00000082502 Gm25589 snRNA Interval_1339 chr1 20795190 20795952 + 0 NA Intergenic Intergenic 9362 ENSMUSG00000041859.10 ENSMUSG00000041859 ENSMUST00000190421 Mcm3 protein_coding Interval_18177 chr10 83328653 83328874 + 0 NA intron (ENSMUSG00000034591.5, intron 1 of 10) protein_coding-intron (ENSMUSG00000034591.5, intron 1 of 10) -3961 ENSMUSG00000112577.1 ENSMUSG00000112577 ENSMUST00000218560 Gm47170 processed_pseudogene Interval_42426 chr13 13450108 13451265 + 0 NA intron (ENSMUSG00000005397.8, intron 1 of 13) protein_coding-intron (ENSMUSG00000005397.8, intron 1 of 19) -31517 ENSMUSG00000094865.2 ENSMUSG00000094865 ENSMUST00000179046 Gm7426 processed_pseudogene Interval_170142 chr9 105494457 105496035 + 0 NA promoter-TSS (ENSMUSG00000032570.17) protein_coding-promoter-TSS (ENSMUSG00000032570.17) 24726 ENSMUSG00000099373.1 ENSMUSG00000099373 ENSMUST00000188984 Gm19667 antisense Interval_133835 chr6 13069293 13070827 + 0 NA promoter-TSS (ENSMUSG00000029571.14) protein_coding-promoter-TSS (ENSMUSG00000029571.14) 206 ENSMUSG00000029571.14 ENSMUSG00000029571 ENSMUST00000122916 Tmem106b protein_coding Interval_75454 chr17 66671813 66672604 + 0 NA intron (ENSMUSG00000033278.10, intron 30 of 30) protein_coding-intron (ENSMUSG00000033278.10, intron 32 of 32) 9986 ENSMUSG00000117065.1 ENSMUSG00000117065 ENSMUST00000232933 Gm49941 processed_pseudogene Interval_70462 chr17 10377218 10378033 + 0 NA Intergenic Intergenic 53023 ENSMUSG00000099384.6 ENSMUSG00000099384 ENSMUST00000188715 1700110C19Rik lincRNA Interval_72659 chr17 31360546 31361629 + 0 NA Intergenic Intergenic -25170 ENSMUSG00000041119.12 ENSMUSG00000041119 ENSMUST00000236367 Pde9a protein_coding Interval_35234 chr12 18573470 18574732 + 0 NA Intergenic Intergenic 14486 ENSMUSG00000113604.1 ENSMUSG00000113604 ENSMUST00000222589 Gm19786 unprocessed_pseudogene Interval_119023 chr4 135054469 135054749 + 0 NA Intergenic Intergenic 65838 ENSMUSG00000086884.1 ENSMUSG00000086884 ENSMUST00000146152 Gm16225 lincRNA Interval_47960 chr13 94659961 94660160 + 0 NA Intergenic Intergenic -12716 ENSMUSG00000113598.1 ENSMUSG00000113598 ENSMUST00000221068 Gm48287 lincRNA Interval_169338 chr9 96505986 96506491 + 0 NA intron (ENSMUSG00000099564.2, intron 7 of 10) protein_coding-intron (ENSMUSG00000099564.2, intron 7 of 10) -11025 ENSMUSG00000099049.1 ENSMUSG00000099049 ENSMUST00000183341 Gm27289 rRNA Interval_7630 chr1 132631091 132632151 + 0 NA intron (ENSMUSG00000026442.14, intron 4 of 25) protein_coding-intron (ENSMUSG00000026442.14, intron 7 of 26) -7109 ENSMUSG00000026442.14 ENSMUSG00000026442 ENSMUST00000189219 Nfasc protein_coding Interval_167242 chr9 66611454 66612188 + 0 NA Intergenic Intergenic -18815 ENSMUSG00000032376.12 ENSMUSG00000032376 ENSMUST00000139952 Usp3 protein_coding Interval_144001 chr7 18892078 18894159 + 0 NA promoter-TSS (ENSMUSG00000074358.9) protein_coding-promoter-TSS (ENSMUSG00000074358.9) -766 ENSMUSG00000074358.9 ENSMUSG00000074358 ENSMUST00000139077 Ccdc61 protein_coding Interval_73860 chr17 44733982 44736610 + 0 NA promoter-TSS (ENSMUSG00000073394.4) antisense-promoter-TSS (ENSMUSG00000073394.4) -549 ENSMUSG00000073394.4 ENSMUSG00000073394 ENSMUST00000097320 Runx2os1 antisense Interval_53237 chr14 55496863 55497843 + 0 NA promoter-TSS (ENSMUSG00000022211.9) protein_coding-promoter-TSS (ENSMUSG00000022211.9) 6702 ENSMUSG00000022211.9 ENSMUSG00000022211 ENSMUST00000226653 Carmil3 protein_coding Interval_48177 chr13 97010852 97011386 + 0 NA Intergenic Intergenic 4180 ENSMUSG00000113934.1 ENSMUSG00000113934 ENSMUST00000222278 Gm48609 processed_pseudogene Interval_2626 chr1 42599587 42599774 + 0 NA intron (ENSMUSG00000060424.14, intron 3 of 3) lincRNA-intron (ENSMUSG00000060424.14, intron 3 of 3) -52046 ENSMUSG00000104199.1 ENSMUSG00000104199 ENSMUST00000191831 4930420N18Rik TEC Interval_135837 chr6 47813033 47813824 + 0 NA promoter-TSS (ENSMUSG00000025823.9) protein_coding-promoter-TSS (ENSMUSG00000025823.9) -64 ENSMUSG00000025823.9 ENSMUSG00000025823 ENSMUST00000204029 Pdia4 protein_coding Interval_83291 chr18 83765383 83766002 + 0 NA Intergenic Intergenic 61914 ENSMUSG00000118024.1 ENSMUSG00000118024 ENSMUST00000237374 Gm50419 lincRNA Interval_68933 chr16 89298168 89298749 + 0 NA Intergenic Intergenic 92597 ENSMUSG00000091039.2 ENSMUSG00000091039 ENSMUST00000169954 Krtap20-2 protein_coding Interval_117898 chr4 126950961 126951361 + 0 NA intron (ENSMUSG00000042446.16, intron 1 of 3) protein_coding-intron (ENSMUSG00000042446.16, intron 1 of 29) 16738 ENSMUSG00000042446.16 ENSMUSG00000042446 ENSMUST00000123597 Zmym4 protein_coding Interval_111563 chr4 23460821 23461276 + 0 NA Intergenic Intergenic -23772 ENSMUSG00000083785.1 ENSMUSG00000083785 ENSMUST00000120471 Gm11888 processed_pseudogene Interval_151679 chr7 125984080 125984495 + 0 NA intron (ENSMUSG00000046182.8, intron 2 of 6) protein_coding-intron (ENSMUSG00000046182.8, intron 2 of 6) 80160 ENSMUSG00000108376.1 ENSMUSG00000108376 ENSMUST00000206586 Gm44874 TEC Interval_30420 chr11 94264717 94266428 + 0 NA Intergenic Intergenic -16301 ENSMUSG00000094091.3 ENSMUSG00000094091 ENSMUST00000178891 Gm21885 protein_coding Interval_150462 chr7 110862882 110863202 + 0 NA promoter-TSS (ENSMUSG00000030787.4) protein_coding-promoter-TSS (ENSMUSG00000030787.4) -89 ENSMUSG00000030787.4 ENSMUSG00000030787 ENSMUST00000209319 Lyve1 protein_coding Interval_125904 chr5 75589474 75590178 + 0 NA intron (ENSMUSG00000005672.12, intron 1 of 20) protein_coding-intron (ENSMUSG00000005672.12, intron 1 of 20) -28676 ENSMUSG00000089078.1 ENSMUSG00000089078 ENSMUST00000158453 Gm24502 snRNA Interval_44960 chr13 50957313 50958727 + 0 NA Intergenic Intergenic -56066 ENSMUSG00000084609.2 ENSMUSG00000084609 ENSMUST00000122660 Gm22199 misc_RNA Interval_42204 chr13 9882273 9883551 + 0 NA intron (ENSMUSG00000046159.16, intron 4 of 4) protein_coding-intron (ENSMUSG00000046159.16, intron 4 of 4) -9998 ENSMUSG00000113146.1 ENSMUSG00000113146 ENSMUST00000221304 Gm47406 processed_pseudogene Interval_115197 chr4 94267594 94268133 + 0 NA intron (ENSMUSG00000085931.1, intron 1 of 5) lincRNA-intron (ENSMUSG00000085931.1, intron 1 of 5) -127795 ENSMUSG00000081508.1 ENSMUSG00000081508 ENSMUST00000120387 Gm12654 processed_pseudogene Interval_153665 chr8 4379480 4380572 + 0 NA intron (ENSMUSG00000109356.1, intron 7 of 7) unprocessed_pseudogene-intron (ENSMUSG00000109356.1, intron 7 of 7) -11700 ENSMUSG00000109241.1 ENSMUSG00000109241 ENSMUST00000208558 Gm7434 processed_pseudogene Interval_81526 chr18 61415989 61416569 + 0 NA Intergenic Intergenic -15879 ENSMUSG00000033871.14 ENSMUSG00000033871 ENSMUST00000142134 Ppargc1b protein_coding Interval_11949 chr1 187448265 187448559 + 0 NA exon (ENSMUSG00000103923.1, exon 2 of 4) lincRNA-exon (ENSMUSG00000103923.1, exon 2 of 4) 535 ENSMUSG00000103923.1 ENSMUSG00000103923 ENSMUST00000195611 Gm37896 lincRNA Interval_143761 chr7 16153261 16154096 + 0 NA intron (ENSMUSG00000030376.8, intron 8 of 9) protein_coding-intron (ENSMUSG00000030376.8, intron 7 of 8) 23852 ENSMUSG00000030376.8 ENSMUSG00000030376 ENSMUST00000168693 Slc8a2 protein_coding Interval_125889 chr5 75459936 75460539 + 0 NA Intergenic Intergenic -60865 ENSMUSG00000107386.1 ENSMUSG00000107386 ENSMUST00000202494 Gm42800 lincRNA Interval_33865 chr11 119073405 119074095 + 0 NA Intergenic Intergenic 12471 ENSMUSG00000039989.7 ENSMUSG00000039989 ENSMUST00000145058 Cbx4 protein_coding Interval_4288 chr1 72400276 72400839 + 0 NA Intergenic Intergenic -58942 ENSMUSG00000085812.1 ENSMUSG00000085812 ENSMUST00000146593 Gm15843 processed_pseudogene Interval_147704 chr7 72279481 72279682 + 0 NA intron (ENSMUSG00000032776.9, intron 1 of 1) protein_coding-intron (ENSMUSG00000032776.9, intron 1 of 22) -50221 ENSMUSG00000032776.9 ENSMUSG00000032776 ENSMUST00000206755 Mctp2 protein_coding Interval_134610 chr6 29958036 29958404 + 0 NA TTS (ENSMUSG00000039629.14) protein_coding-TTS (ENSMUSG00000039629.14) -2773 ENSMUSG00000082036.1 ENSMUSG00000082036 ENSMUST00000122395 Gm13724 processed_pseudogene Interval_77277 chr17 87720128 87721128 + 0 NA intron (ENSMUSG00000024151.13, intron 14 of 15) protein_coding-intron (ENSMUSG00000024151.13, intron 14 of 15) 24087 ENSMUSG00000024151.13 ENSMUSG00000024151 ENSMUST00000174703 Msh2 protein_coding Interval_172235 chrX 11550334 11550675 + 0 NA Intergenic Intergenic -50850 ENSMUSG00000083492.1 ENSMUSG00000083492 ENSMUST00000121327 Gm14515 processed_pseudogene Interval_20568 chr10 119108920 119109739 + 0 NA Intergenic Intergenic -2295 ENSMUSG00000112609.1 ENSMUSG00000112609 ENSMUST00000220151 Gm47480 lincRNA Interval_17430 chr10 76584030 76584366 + 0 NA exon (ENSMUSG00000001155.13, exon 9 of 14) protein_coding-exon (ENSMUSG00000001155.13, exon 9 of 14) -2935 ENSMUSG00000001155.13 ENSMUSG00000001155 ENSMUST00000146344 Ftcd protein_coding Interval_131864 chr5 140464890 140465546 + 0 NA intron (ENSMUSG00000106350.2, intron 6 of 19) protein_coding-intron (ENSMUSG00000106350.2, intron 6 of 19) -11327 ENSMUSG00000105056.1 ENSMUSG00000105056 ENSMUST00000196158 Gm42805 processed_pseudogene Interval_13962 chr10 25111263 25112101 + 0 NA Intergenic Intergenic 57542 ENSMUSG00000093282.1 ENSMUSG00000093282 ENSMUST00000175541 Gm22566 miRNA Interval_168725 chr9 86449376 86450264 + 0 NA intron (ENSMUSG00000032415.14, intron 2 of 9) protein_coding-intron (ENSMUSG00000032415.14, intron 2 of 9) 15130 ENSMUSG00000032415.14 ENSMUSG00000032415 ENSMUST00000121189 Ube2cbp protein_coding Interval_35969 chr12 32953512 32954906 + 0 NA promoter-TSS (ENSMUSG00000020570.15) protein_coding-promoter-TSS (ENSMUSG00000020570.15) -420 ENSMUSG00000097494.7 ENSMUSG00000097494 ENSMUST00000180391 4933406C10Rik lincRNA Interval_102596 chr3 28113780 28114225 + 0 NA intron (ENSMUSG00000027695.16, intron 17 of 21) protein_coding-intron (ENSMUSG00000027695.16, intron 22 of 25) 34812 ENSMUSG00000027695.16 ENSMUSG00000027695 ENSMUST00000126594 Pld1 protein_coding Interval_3733 chr1 62580500 62580725 + 0 NA intron (ENSMUSG00000052062.14, intron 20 of 21) protein_coding-intron (ENSMUSG00000052062.14, intron 20 of 21) -44670 ENSMUSG00000100750.1 ENSMUSG00000100750 ENSMUST00000185587 Gm29084 antisense Interval_100647 chr2 170720087 170720964 + 0 NA Intergenic Intergenic -11282 ENSMUSG00000027560.4 ENSMUSG00000027560 ENSMUST00000029075 Dok5 protein_coding Interval_47992 chr13 94907640 94908944 + 0 NA Intergenic Intergenic 25692 ENSMUSG00000021685.11 ENSMUSG00000021685 ENSMUST00000184985 Otp protein_coding Interval_149938 chr7 102919657 102920296 + 0 NA Intergenic Intergenic -2440 ENSMUSG00000043310.4 ENSMUSG00000043310 ENSMUST00000061738 Olfr571 protein_coding Interval_67294 chr16 45653233 45654717 + 0 NA promoter-TSS (ENSMUSG00000033187.8) protein_coding-promoter-TSS (ENSMUSG00000033187.8) 93 ENSMUSG00000033187.8 ENSMUSG00000033187 ENSMUST00000036732 BC016579 protein_coding Interval_43854 chr13 37601337 37601754 + 0 NA Intergenic Intergenic 19274 ENSMUSG00000114718.1 ENSMUSG00000114718 ENSMUST00000223615 Gm47753 processed_pseudogene Interval_169340 chr9 96515218 96515945 + 0 NA intron (ENSMUSG00000099564.2, intron 4 of 10) protein_coding-intron (ENSMUSG00000099564.2, intron 4 of 10) 9683 ENSMUSG00000099564.2 ENSMUSG00000099564 ENSMUST00000190704 Gm28729 protein_coding Interval_128871 chr5 115770176 115771037 + 0 NA Intergenic Intergenic 31553 ENSMUSG00000083833.4 ENSMUSG00000083833 ENSMUST00000118829 Gm13841 processed_pseudogene Interval_42503 chr13 14214182 14215565 + 0 NA Intergenic Intergenic 7065 ENSMUSG00000113563.1 ENSMUSG00000113563 ENSMUST00000221355 Gm2492 processed_pseudogene Interval_146389 chr7 45643288 45644549 + 0 NA promoter-TSS (ENSMUSG00000042918.17) protein_coding-promoter-TSS (ENSMUSG00000042918.17) 2438 ENSMUSG00000042918.17 ENSMUSG00000042918 ENSMUST00000210169 Mamstr protein_coding Interval_156383 chr8 47842649 47844455 + 0 NA intron (ENSMUSG00000031563.8, intron 20 of 22) protein_coding-intron (ENSMUSG00000031563.8, intron 20 of 22) 19070 ENSMUSG00000038064.7 ENSMUSG00000038064 ENSMUST00000038693 Cldn22 protein_coding Interval_44658 chr13 46974871 46975835 + 0 NA Intergenic Intergenic -5367 ENSMUSG00000089131.1 ENSMUSG00000089131 ENSMUST00000158506 Gm24769 snoRNA Interval_26405 chr11 57673056 57673259 + 0 NA intron (ENSMUSG00000020520.14, intron 1 of 2) protein_coding-intron (ENSMUSG00000020520.14, intron 1 of 11) -15331 ENSMUSG00000086933.1 ENSMUSG00000086933 ENSMUST00000143009 4933426K07Rik antisense Interval_151716 chr7 126226174 126227165 + 0 NA intron (ENSMUSG00000108676.1, intron 4 of 4) lincRNA-intron (ENSMUSG00000108676.1, intron 4 of 4) 15958 ENSMUSG00000108309.1 ENSMUSG00000108309 ENSMUST00000205724 Gm44703 processed_pseudogene Interval_91615 chr2 44611274 44612184 + 0 NA intron (ENSMUSG00000036890.13, intron 4 of 4) protein_coding-intron (ENSMUSG00000036890.13, intron 3 of 7) -176536 ENSMUSG00000083849.1 ENSMUSG00000083849 ENSMUST00000121620 Gm13477 processed_pseudogene Interval_56197 chr14 112012246 112012519 + 0 NA Intergenic Intergenic 18856 ENSMUSG00000115558.1 ENSMUSG00000115558 ENSMUST00000227711 Gm49000 TEC Interval_114257 chr4 70245885 70246547 + 0 NA intron (ENSMUSG00000039298.16, intron 28 of 36) protein_coding-intron (ENSMUSG00000039298.16, intron 25 of 33) 3157 ENSMUSG00000080902.1 ENSMUSG00000080902 ENSMUST00000120944 Ywhaq-ps3 transcribed_processed_pseudogene Interval_41987 chr13 5980057 5980569 + 0 NA intron (ENSMUSG00000113017.1, intron 3 of 4) lincRNA-intron (ENSMUSG00000113017.1, intron 1 of 2) 17238 ENSMUSG00000077971.1 ENSMUSG00000077971 ENSMUST00000104778 Gm26259 miRNA Interval_159262 chr8 92438333 92438532 + 0 NA Intergenic Intergenic -27335 ENSMUSG00000110290.1 ENSMUSG00000110290 ENSMUST00000210010 Gm45336 lincRNA Interval_105334 chr3 85022869 85023219 + 0 NA intron (ENSMUSG00000102805.5, intron 3 of 9) protein_coding-intron (ENSMUSG00000102805.5, intron 3 of 9) 129652 ENSMUSG00000104290.1 ENSMUSG00000104290 ENSMUST00000194445 Gm38041 processed_pseudogene Interval_24839 chr11 40189880 40190413 + 0 NA intron (ENSMUSG00000085301.1, intron 5 of 7) lincRNA-intron (ENSMUSG00000085301.1, intron 5 of 7) 181952 ENSMUSG00000085301.1 ENSMUSG00000085301 ENSMUST00000130945 Gm12132 lincRNA Interval_84414 chr19 10723134 10724254 + 0 NA intron (ENSMUSG00000024669.8, intron 6 of 11) protein_coding-intron (ENSMUSG00000024669.8, intron 5 of 10) 15308 ENSMUSG00000024669.8 ENSMUSG00000024669 ENSMUST00000237397 Cd5 protein_coding Interval_154222 chr8 13561993 13562526 + 0 NA exon (ENSMUSG00000031452.15, exon 1 of 9) protein_coding-exon (ENSMUSG00000031452.15, exon 1 of 9) 202 ENSMUSG00000031452.15 ENSMUSG00000031452 ENSMUST00000132787 1700029H14Rik protein_coding Interval_112217 chr4 36289250 36289894 + 0 NA intron (ENSMUSG00000045083.14, intron 3 of 6) protein_coding-intron (ENSMUSG00000045083.14, intron 3 of 7) -154498 ENSMUSG00000084352.1 ENSMUSG00000084352 ENSMUST00000117809 Gm12370 processed_pseudogene Interval_92619 chr2 61592787 61594057 + 0 NA intron (ENSMUSG00000064289.15, intron 1 of 9) protein_coding-intron (ENSMUSG00000064289.15, intron 1 of 7) -50409 ENSMUSG00000064289.15 ENSMUSG00000064289 ENSMUST00000154693 Tank protein_coding Interval_132056 chr5 142517304 142517677 + 0 NA intron (ENSMUSG00000029576.17, intron 2 of 13) protein_coding-intron (ENSMUSG00000029576.17, intron 2 of 14) 12586 ENSMUSG00000074817.2 ENSMUSG00000074817 ENSMUST00000099400 Papolb protein_coding Interval_65048 chr16 18702927 18703382 + 0 NA Intergenic Intergenic -20938 ENSMUSG00000116825.1 ENSMUSG00000116825 ENSMUST00000231787 Rps2-ps7 processed_pseudogene Interval_53768 chr14 61622981 61626823 + 0 NA TTS (ENSMUSG00000097589.9) processed_transcript-TTS (ENSMUSG00000097589.9) 2435 ENSMUSG00000098183.1 ENSMUSG00000098183 ENSMUST00000182727 Gm27010 lincRNA Interval_111622 chr4 24713026 24713518 + 0 NA intron (ENSMUSG00000040387.16, intron 1 of 7) protein_coding-intron (ENSMUSG00000040387.16, intron 4 of 9) 30693 ENSMUSG00000040387.16 ENSMUSG00000040387 ENSMUST00000144062 Klhl32 protein_coding Interval_165414 chr9 47600264 47602051 + 0 NA intron (ENSMUSG00000032076.20, intron 1 of 8) protein_coding-intron (ENSMUSG00000032076.20, intron 1 of 8) 70805 ENSMUSG00000032076.20 ENSMUSG00000032076 ENSMUST00000034581 Cadm1 protein_coding Interval_109972 chr3 152245374 152247034 + 0 NA intron (ENSMUSG00000039103.12, intron 6 of 9) protein_coding-intron (ENSMUSG00000039103.12, intron 8 of 12) 6599 ENSMUSG00000104621.1 ENSMUSG00000104621 ENSMUST00000197507 Gm43185 TEC Interval_26872 chr11 61215942 61216568 + 0 NA intron (ENSMUSG00000019102.10, intron 6 of 10) protein_coding-intron (ENSMUSG00000019102.10, intron 6 of 10) 8718 ENSMUSG00000019102.10 ENSMUSG00000019102 ENSMUST00000019246 Aldh3a1 protein_coding Interval_171775 chr9 120954042 120954332 + 0 NA promoter-TSS (ENSMUSG00000006932.17) protein_coding-promoter-TSS (ENSMUSG00000006932.17) -899 ENSMUSG00000106193.1 ENSMUSG00000106193 ENSMUST00000198187 Mir7090 miRNA Interval_143379 chr7 6239504 6241378 + 0 NA Intergenic Intergenic 10262 ENSMUSG00000058028.14 ENSMUSG00000058028 ENSMUST00000165445 Zscan5b protein_coding Interval_36749 chr12 52998344 52998595 + 0 NA intron (ENSMUSG00000061603.8, intron 6 of 11) protein_coding-intron (ENSMUSG00000061603.8, intron 7 of 13) 48357 ENSMUSG00000070192.1 ENSMUSG00000070192 ENSMUST00000093682 n-R5s58 rRNA Interval_168025 chr9 75454890 75456451 + 0 NA exon (ENSMUSG00000042487.6, exon 8 of 12) protein_coding-exon (ENSMUSG00000042487.6, exon 8 of 12) 14146 ENSMUSG00000042487.6 ENSMUSG00000042487 ENSMUST00000213248 Leo1 protein_coding Interval_137210 chr6 70102346 70104916 + 0 NA Intergenic Intergenic 2784 ENSMUSG00000105781.1 ENSMUSG00000105781 ENSMUST00000200040 Igkv8-31 IG_V_pseudogene Interval_172126 chrX 7779399 7779631 + 0 NA Intergenic Intergenic -10491 ENSMUSG00000031153.16 ENSMUSG00000031153 ENSMUST00000144946 Gripap1 protein_coding Interval_22266 chr11 8437696 8438132 + 0 NA intron (ENSMUSG00000020422.14, intron 27 of 30) protein_coding-intron (ENSMUSG00000020422.14, intron 27 of 30) -54061 ENSMUSG00000083553.1 ENSMUSG00000083553 ENSMUST00000117240 Gm11989 processed_pseudogene Interval_152698 chr7 136488863 136489276 + 0 NA Intergenic Intergenic 20264 ENSMUSG00000087869.1 ENSMUSG00000087869 ENSMUST00000157244 Gm24444 misc_RNA Interval_144545 chr7 25805685 25806289 + 0 NA exon (ENSMUSG00000040703.11, exon 7 of 9) protein_coding-exon (ENSMUSG00000040703.11, exon 7 of 9) -4188 ENSMUSG00000108691.1 ENSMUSG00000108691 ENSMUST00000206602 Gm45226 processed_pseudogene Interval_173500 chrX 96095457 96097354 + 0 NA intron (ENSMUSG00000031207.16, intron 1 of 3) protein_coding-intron (ENSMUSG00000031207.16, intron 1 of 12) 348 ENSMUSG00000031207.16 ENSMUSG00000031207 ENSMUST00000135027 Msn protein_coding Interval_27227 chr11 64434709 64436577 + 0 NA exon (ENSMUSG00000047759.6, exon 1 of 2) protein_coding-exon (ENSMUSG00000047759.6, exon 1 of 2) 311 ENSMUSG00000047759.6 ENSMUSG00000047759 ENSMUST00000058652 Hs3st3a1 protein_coding Interval_144318 chr7 24459241 24460101 + 0 NA Intergenic Intergenic -2829 ENSMUSG00000046223.10 ENSMUSG00000046223 ENSMUST00000206636 Plaur protein_coding Interval_113277 chr4 53023175 53024006 + 0 NA Intergenic Intergenic 2614 ENSMUSG00000015247.10 ENSMUSG00000015247 ENSMUST00000132678 Nipsnap3b protein_coding Interval_156213 chr8 46141830 46142549 + 0 NA intron (ENSMUSG00000038291.16, intron 1 of 18) protein_coding-intron (ENSMUSG00000038291.16, intron 1 of 18) -10421 ENSMUSG00000086279.1 ENSMUSG00000086279 ENSMUST00000147206 Gm15634 sense_intronic Interval_48365 chr13 98532521 98533434 + 0 NA Intergenic Intergenic -15039 ENSMUSG00000104430.1 ENSMUSG00000104430 ENSMUST00000193184 Gm37425 TEC Interval_170203 chr9 106170248 106172192 + 0 NA promoter-TSS (ENSMUSG00000020257.13) protein_coding-promoter-TSS (ENSMUSG00000020257.13) -157 ENSMUSG00000020257.13 ENSMUSG00000020257 ENSMUST00000190564 Wdr82 protein_coding Interval_10919 chr1 176997817 176998486 + 0 NA exon (ENSMUSG00000026504.17, exon 1 of 3) protein_coding-exon (ENSMUSG00000026504.17, exon 1 of 3) 23915 ENSMUSG00000103251.1 ENSMUSG00000103251 ENSMUST00000191687 Gm37519 TEC Interval_89200 chr2 18010306 18010600 + 0 NA Intergenic Intergenic -11948 ENSMUSG00000081116.1 ENSMUSG00000081116 ENSMUST00000117063 Gm13329 processed_pseudogene Interval_131846 chr5 140341328 140341691 + 0 NA exon (ENSMUSG00000029560.12, exon 11 of 11) protein_coding-exon (ENSMUSG00000029560.12, exon 11 of 11) -9611 ENSMUSG00000029557.7 ENSMUSG00000029557 ENSMUST00000031536 Mrm2 protein_coding Interval_57346 chr15 9353956 9355322 + 0 NA intron (ENSMUSG00000049152.11, intron 3 of 3) protein_coding-intron (ENSMUSG00000049152.11, intron 3 of 6) 19050 ENSMUSG00000049152.11 ENSMUSG00000049152 ENSMUST00000144755 Ugt3a2 protein_coding Interval_166429 chr9 59424681 59425515 + 0 NA TTS (ENSMUSG00000025234.11) protein_coding-TTS (ENSMUSG00000025234.11) 47135 ENSMUSG00000090516.1 ENSMUSG00000090516 ENSMUST00000171632 Rps11-ps1 processed_pseudogene Interval_171355 chr9 116924345 116924869 + 0 NA intron (ENSMUSG00000039607.17, intron 4 of 4) protein_coding-intron (ENSMUSG00000039607.17, intron 4 of 12) -134551 ENSMUSG00000092184.1 ENSMUSG00000092184 ENSMUST00000172565 Gm18489 processed_pseudogene Interval_156295 chr8 47135545 47136584 + 0 NA intron (ENSMUSG00000110264.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000110264.1, intron 1 of 1) 413 ENSMUSG00000110264.1 ENSMUSG00000110264 ENSMUST00000209455 E330018M18Rik lincRNA Interval_3949 chr1 65027956 65028399 + 0 NA promoter-TSS (ENSMUSG00000090042.1) processed_pseudogene-promoter-TSS (ENSMUSG00000090042.1) 97 ENSMUSG00000090042.1 ENSMUSG00000090042 ENSMUST00000161621 Gm8550 processed_pseudogene Interval_98406 chr2 152121052 152121371 + 0 NA Intergenic Intergenic 15695 ENSMUSG00000032802.8 ENSMUSG00000032802 ENSMUST00000041500 Srxn1 protein_coding Interval_63060 chr15 98891274 98893321 + 0 NA exon (ENSMUSG00000023000.5, exon 3 of 3) protein_coding-exon (ENSMUSG00000023000.5, exon 3 of 3) -1054 ENSMUSG00000116033.1 ENSMUSG00000116033 ENSMUST00000230242 Gm49442 antisense Interval_12190 chr1 190716427 190716856 + 0 NA intron (ENSMUSG00000089872.10, intron 11 of 12) protein_coding-intron (ENSMUSG00000089872.10, intron 11 of 12) 122315 ENSMUSG00000103963.1 ENSMUSG00000103963 ENSMUST00000191893 Gm30932 lincRNA Interval_77265 chr17 87651967 87652707 + 0 NA Intergenic Intergenic 16358 ENSMUSG00000045394.9 ENSMUSG00000045394 ENSMUST00000234623 Epcam protein_coding Interval_172513 chrX 22733492 22733786 + 0 NA Intergenic Intergenic -128297 ENSMUSG00000064659.1 ENSMUSG00000064659 ENSMUST00000082725 Gm26131 snRNA Interval_5927 chr1 93275211 93276194 + 0 NA intron (ENSMUSG00000047793.13, intron 16 of 22) protein_coding-intron (ENSMUSG00000047793.13, intron 16 of 30) 1153 ENSMUSG00000098997.1 ENSMUSG00000098997 ENSMUST00000185062 Mir6901 miRNA Interval_2277 chr1 37635914 37636213 + 0 NA intron (ENSMUSG00000026090.16, intron 3 of 9) protein_coding-intron (ENSMUSG00000026090.16, intron 3 of 9) 21804 ENSMUSG00000089767.1 ENSMUSG00000089767 ENSMUST00000160659 4930556I23Rik antisense Interval_23705 chr11 24864563 24865153 + 0 NA Intergenic Intergenic 61192 ENSMUSG00000087145.7 ENSMUSG00000087145 ENSMUST00000126063 Gm12665 lincRNA Interval_11605 chr1 183244300 183244531 + 0 NA Intergenic Intergenic -22925 ENSMUSG00000030768.12 ENSMUSG00000030768 ENSMUST00000194033 Disp1 protein_coding Interval_135130 chr6 36132536 36132834 + 0 NA Intergenic Intergenic 56414 ENSMUSG00000107089.1 ENSMUSG00000107089 ENSMUST00000202337 Gm43443 TEC Interval_24510 chr11 33864440 33864692 + 0 NA intron (ENSMUSG00000053519.17, intron 1 of 7) protein_coding-intron (ENSMUSG00000053519.17, intron 1 of 3) -98447 ENSMUSG00000020155.2 ENSMUSG00000020155 ENSMUST00000020362 Kcnmb1 protein_coding Interval_141060 chr6 124745157 124746407 + 0 NA promoter-TSS (ENSMUSG00000004263.15) protein_coding-promoter-TSS (ENSMUSG00000004263.15) -4496 ENSMUSG00000089083.1 ENSMUSG00000089083 ENSMUST00000158458 Rnu7 snRNA Interval_161467 chr8 120588526 120589682 + 0 NA promoter-TSS (ENSMUSG00000031821.11) protein_coding-promoter-TSS (ENSMUSG00000031821.11) -427 ENSMUSG00000097773.1 ENSMUSG00000097773 ENSMUST00000181414 Gm10614 bidirectional_promoter_lncRNA Interval_64027 chr16 5500383 5500988 + 0 NA Intergenic Intergenic -176528 ENSMUSG00000084573.1 ENSMUSG00000084573 ENSMUST00000122624 n-R5s30 rRNA Interval_26908 chr11 61493564 61494874 + 0 NA promoter-TSS (ENSMUSG00000001034.17) protein_coding-promoter-TSS (ENSMUSG00000001034.17) -3281 ENSMUSG00000001034.17 ENSMUSG00000001034 ENSMUST00000140779 Mapk7 protein_coding Interval_143650 chr7 13814130 13814448 + 0 NA exon (ENSMUSG00000100660.1, exon 1 of 1) processed_pseudogene-exon (ENSMUSG00000100660.1, exon 1 of 1) 753 ENSMUSG00000100660.1 ENSMUSG00000100660 ENSMUST00000188339 Kat6b-ps2 processed_pseudogene Interval_115266 chr4 95007859 95008548 + 0 NA intron (ENSMUSG00000086251.1, intron 2 of 4) antisense-intron (ENSMUSG00000086251.1, intron 2 of 4) 29000 ENSMUSG00000086251.1 ENSMUSG00000086251 ENSMUST00000149367 Gm12694 antisense Interval_3925 chr1 64846683 64848349 + 0 NA intron (ENSMUSG00000051344.13, intron 6 of 8) protein_coding-intron (ENSMUSG00000051344.13, intron 6 of 7) -10752 ENSMUSG00000051344.13 ENSMUSG00000051344 ENSMUST00000134097 Plekhm3 protein_coding Interval_97359 chr2 135371653 135371921 + 0 NA intron (ENSMUSG00000051177.16, intron 27 of 32) protein_coding-intron (ENSMUSG00000051177.16, intron 27 of 31) -156171 ENSMUSG00000085247.1 ENSMUSG00000085247 ENSMUST00000138303 4930545L23Rik antisense Interval_162825 chr9 9673283 9673949 + 0 NA intron (ENSMUSG00000039488.15, intron 16 of 18) protein_coding-intron (ENSMUSG00000039488.15, intron 20 of 22) -2575 ENSMUSG00000092776.1 ENSMUSG00000092776 ENSMUST00000175035 Gm26195 miRNA Interval_11622 chr1 183409440 183410925 + 0 NA TTS (ENSMUSG00000072258.10) protein_coding-TTS (ENSMUSG00000072258.10) 1573 ENSMUSG00000072258.10 ENSMUSG00000072258 ENSMUST00000195798 Taf1a protein_coding Interval_66942 chr16 38654271 38654999 + 0 NA intron (ENSMUSG00000022799.4, intron 1 of 1) protein_coding-intron (ENSMUSG00000022799.4, intron 1 of 11) 31234 ENSMUSG00000081651.1 ENSMUSG00000081651 ENSMUST00000122206 Gm15530 processed_pseudogene Interval_103081 chr3 35103030 35103470 + 0 NA Intergenic Intergenic 172881 ENSMUSG00000105651.1 ENSMUSG00000105651 ENSMUST00000198307 1700017M07Rik lincRNA Interval_518 chr1 6911485 6912028 + 0 NA TTS (ENSMUSG00000104385.1) processed_pseudogene-TTS (ENSMUSG00000104385.1) 1196 ENSMUSG00000104385.1 ENSMUSG00000104385 ENSMUST00000194393 Gm7449 processed_pseudogene Interval_90433 chr2 30424275 30424507 + 0 NA intron (ENSMUSG00000039515.11, intron 1 of 1) protein_coding-intron (ENSMUSG00000039515.11, intron 1 of 9) 8089 ENSMUSG00000039515.11 ENSMUSG00000039515 ENSMUST00000135105 Ptpa protein_coding Interval_71388 chr17 22982990 22983482 + 0 NA Intergenic Intergenic -9470 ENSMUSG00000094752.1 ENSMUSG00000094752 ENSMUST00000177509 Vmn2r-ps129 unprocessed_pseudogene Interval_53257 chr14 55623274 55623657 + 0 NA promoter-TSS (ENSMUSG00000002324.8) protein_coding-promoter-TSS (ENSMUSG00000002324.8) -33 ENSMUSG00000002324.8 ENSMUSG00000002324 ENSMUST00000155193 Rec8 protein_coding Interval_87359 chr19 47937436 47938097 + 0 NA promoter-TSS (ENSMUSG00000046585.9) protein_coding-promoter-TSS (ENSMUSG00000046585.9) 91 ENSMUSG00000046585.9 ENSMUSG00000046585 ENSMUST00000066308 Cfap58 protein_coding Interval_21893 chr11 5043426 5043626 + 0 NA TTS (ENSMUSG00000009090.17) protein_coding-TTS (ENSMUSG00000009090.17) 5315 ENSMUSG00000088634.1 ENSMUSG00000088634 ENSMUST00000158009 Gm24958 snoRNA Interval_35385 chr12 21223610 21224466 + 0 NA intron (ENSMUSG00000052632.16, intron 11 of 22) protein_coding-intron (ENSMUSG00000052632.16, intron 11 of 26) 23285 ENSMUSG00000118655.1 ENSMUSG00000118655 ENSMUST00000172962 AC156032.1 processed_transcript Interval_122646 chr5 24432228 24433640 + 0 NA exon (ENSMUSG00000028962.14, exon 8 of 23) protein_coding-exon (ENSMUSG00000028962.14, exon 8 of 23) -3826 ENSMUSG00000028962.14 ENSMUSG00000028962 ENSMUST00000140722 Slc4a2 protein_coding Interval_148007 chr7 77761743 77762075 + 0 NA Intergenic Intergenic 148411 ENSMUSG00000064940.1 ENSMUSG00000064940 ENSMUST00000083006 Gm23239 snRNA Interval_100541 chr2 170031809 170032393 + 0 NA intron (ENSMUSG00000047907.11, intron 1 of 1) protein_coding-intron (ENSMUSG00000047907.11, intron 1 of 1) -68914 ENSMUSG00000103935.1 ENSMUSG00000103935 ENSMUST00000194482 AY702102 TEC Interval_24711 chr11 36047006 36047573 + 0 NA exon (ENSMUSG00000049336.16, exon 23 of 29) protein_coding-exon (ENSMUSG00000049336.16, exon 23 of 29) -33375 ENSMUSG00000087245.1 ENSMUSG00000087245 ENSMUST00000147717 Gm12126 antisense Interval_89679 chr2 24488807 24489378 + 0 NA Intergenic Intergenic -4976 ENSMUSG00000082307.3 ENSMUSG00000082307 ENSMUST00000119097 Gm13418 processed_pseudogene Interval_116523 chr4 115019421 115019673 + 0 NA intron (ENSMUSG00000028718.16, intron 1 of 2) protein_coding-intron (ENSMUSG00000028718.16, intron 10 of 16) 12786 ENSMUSG00000028718.16 ENSMUSG00000028718 ENSMUST00000144316 Stil protein_coding Interval_121875 chr5 9057805 9059230 + 0 NA intron (ENSMUSG00000114430.1, intron 2 of 2) lincRNA-intron (ENSMUSG00000114430.1, intron 2 of 2) 23737 ENSMUSG00000114430.1 ENSMUSG00000114430 ENSMUST00000224996 Gm40264 lincRNA Interval_34841 chr12 12539838 12540106 + 0 NA Intergenic Intergenic 129945 ENSMUSG00000118614.1 ENSMUSG00000118614 ENSMUST00000239228 AC107703.1 lincRNA Interval_141260 chr6 126642870 126643170 + 0 NA TTS (ENSMUSG00000047976.4) protein_coding-TTS (ENSMUSG00000047976.4) 3364 ENSMUSG00000047976.4 ENSMUSG00000047976 ENSMUST00000205171 Kcna1 protein_coding Interval_120977 chr4 152027161 152028114 + 0 NA promoter-TSS (ENSMUSG00000028952.12) protein_coding-promoter-TSS (ENSMUSG00000028952.12) -1193 ENSMUSG00000028952.12 ENSMUSG00000028952 ENSMUST00000131935 Zbtb48 protein_coding Interval_78648 chr18 16419134 16419599 + 0 NA Intergenic Intergenic -144422 ENSMUSG00000063628.2 ENSMUSG00000063628 ENSMUST00000076710 Gm7665 processed_pseudogene Interval_24519 chr11 33950912 33952080 + 0 NA intron (ENSMUSG00000053519.17, intron 1 of 7) protein_coding-intron (ENSMUSG00000053519.17, intron 1 of 3) -11517 ENSMUSG00000020155.2 ENSMUSG00000020155 ENSMUST00000020362 Kcnmb1 protein_coding Interval_111729 chr4 26912508 26913009 + 0 NA Intergenic Intergenic -207309 ENSMUSG00000086257.1 ENSMUSG00000086257 ENSMUST00000154459 4930548K13Rik lincRNA Interval_141548 chr6 129109829 129110919 + 0 NA Intergenic Intergenic -6144 ENSMUSG00000079295.5 ENSMUSG00000079295 ENSMUST00000184388 Klrb1-ps1 transcribed_unprocessed_pseudogene Interval_28570 chr11 76789175 76789552 + 0 NA intron (ENSMUSG00000020841.5, intron 2 of 2) protein_coding-intron (ENSMUSG00000020841.5, intron 17 of 20) 1659 ENSMUSG00000020841.5 ENSMUSG00000020841 ENSMUST00000132796 Cpd protein_coding Interval_13949 chr10 24926319 24926551 + 0 NA intron (ENSMUSG00000019987.9, intron 1 of 1) protein_coding-intron (ENSMUSG00000019987.9, intron 1 of 7) 1002 ENSMUSG00000019987.9 ENSMUSG00000019987 ENSMUST00000220186 Arg1 protein_coding Interval_63278 chr15 100063183 100063929 + 0 NA intron (ENSMUSG00000023026.16, intron 1 of 37) protein_coding-intron (ENSMUSG00000023026.16, intron 1 of 37) 28201 ENSMUSG00000116021.1 ENSMUSG00000116021 ENSMUST00000230449 Gm49474 TEC Interval_15212 chr10 43392823 43393585 + 0 NA promoter-TSS (ENSMUSG00000038240.13) protein_coding-promoter-TSS (ENSMUSG00000038240.13) -19284 ENSMUSG00000089839.1 ENSMUSG00000089839 ENSMUST00000160308 Rps19-ps11 processed_pseudogene Interval_121566 chr5 3490806 3492167 + 0 NA intron (ENSMUSG00000040274.11, intron 5 of 7) protein_coding-intron (ENSMUSG00000040274.11, intron 4 of 6) 8586 ENSMUSG00000105534.1 ENSMUSG00000105534 ENSMUST00000196630 Gm42435 antisense Interval_267 KZ289068.1 422103 422307 + 0 NA NA NA NA NA Interval_115838 chr4 105181359 105182790 + 0 NA intron (ENSMUSG00000028517.8, intron 1 of 5) protein_coding-intron (ENSMUSG00000028517.8, intron 1 of 5) 24727 ENSMUSG00000028517.8 ENSMUSG00000028517 ENSMUST00000064139 Plpp3 protein_coding Interval_113632 chr4 57141821 57144176 + 0 NA exon (ENSMUSG00000028434.12, exon 1 of 16) protein_coding-exon (ENSMUSG00000028434.12, exon 1 of 16) -29073 ENSMUSG00000085967.1 ENSMUSG00000085967 ENSMUST00000152074 Gm12530 antisense Interval_124016 chr5 37245502 37247045 + 0 NA intron (ENSMUSG00000029121.16, intron 1 of 1) protein_coding-intron (ENSMUSG00000029121.16, intron 1 of 13) -1012 ENSMUSG00000029121.16 ENSMUSG00000029121 ENSMUST00000200834 Crmp1 protein_coding Interval_125149 chr5 64861403 64862443 + 0 NA Intergenic Intergenic 37046 ENSMUSG00000118495.1 ENSMUSG00000118495 ENSMUST00000238830 AC161757.1 processed_pseudogene Interval_97802 chr2 144172152 144172878 + 0 NA TTS (ENSMUSG00000074758.10) lincRNA-TTS (ENSMUSG00000074758.10) 18536 ENSMUSG00000074758.10 ENSMUSG00000074758 ENSMUST00000209482 Gm5535 lincRNA Interval_30013 chr11 88689780 88690823 + 0 NA intron (ENSMUSG00000069769.13, intron 5 of 7) protein_coding-intron (ENSMUSG00000069769.13, intron 5 of 13) -28344 ENSMUSG00000087574.1 ENSMUSG00000087574 ENSMUST00000125967 C030037D09Rik lincRNA Interval_103545 chr3 48540245 48540615 + 0 NA Intergenic Intergenic 68672 ENSMUSG00000037910.2 ENSMUSG00000037910 ENSMUST00000036023 1700018B24Rik lincRNA Interval_168295 chr9 78487654 78489407 + 0 NA intron (ENSMUSG00000037742.14, intron 1 of 4) protein_coding-intron (ENSMUSG00000037742.14, intron 1 of 4) -7689 ENSMUSG00000037742.14 ENSMUSG00000037742 ENSMUST00000156988 Eef1a1 protein_coding Interval_49875 chr13 117502230 117502703 + 0 NA Intergenic Intergenic -43391 ENSMUSG00000114358.1 ENSMUSG00000114358 ENSMUST00000223786 Gm5200 processed_pseudogene Interval_107053 chr3 103182422 103183357 + 0 NA Intergenic Intergenic -2446 ENSMUSG00000098153.1 ENSMUSG00000098153 ENSMUST00000182561 Gm27024 processed_pseudogene Interval_144514 chr7 25625276 25628183 + 0 NA promoter-TSS (ENSMUSG00000059479.7) protein_coding-promoter-TSS (ENSMUSG00000059479.7) -908 ENSMUSG00000059479.7 ENSMUSG00000059479 ENSMUST00000206824 B3gnt8 protein_coding Interval_10429 chr1 170802060 170802312 + 0 NA intron (ENSMUSG00000026663.6, intron 9 of 15) protein_coding-intron (ENSMUSG00000026663.6, intron 9 of 15) -7815 ENSMUSG00000026663.6 ENSMUSG00000026663 ENSMUST00000182787 Atf6 protein_coding Interval_136203 chr6 52019133 52020497 + 0 NA intron (ENSMUSG00000108244.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000108244.1, intron 1 of 1) 7214 ENSMUSG00000108244.1 ENSMUSG00000108244 ENSMUST00000203453 Gm44077 lincRNA Interval_147247 chr7 65051853 65052514 + 0 NA intron (ENSMUSG00000030518.17, intron 1 of 3) protein_coding-intron (ENSMUSG00000030518.17, intron 1 of 9) -95607 ENSMUSG00000093212.1 ENSMUSG00000093212 ENSMUST00000175471 Gm25249 miRNA Interval_58282 chr15 31611067 31611811 + 0 NA intron (ENSMUSG00000039065.11, intron 5 of 5) protein_coding-intron (ENSMUSG00000039065.11, intron 4 of 4) 9321 ENSMUSG00000039065.11 ENSMUSG00000039065 ENSMUST00000161061 Atpsckmt protein_coding Interval_39285 chr12 86466198 86466570 + 0 NA intron (ENSMUSG00000021255.17, intron 1 of 6) protein_coding-intron (ENSMUSG00000021255.17, intron 1 of 6) -3733 ENSMUSG00000021255.17 ENSMUSG00000021255 ENSMUST00000136464 Esrrb protein_coding Interval_16137 chr10 60968529 60968792 + 0 NA Intergenic Intergenic 7937 ENSMUSG00000080526.1 ENSMUSG00000080526 ENSMUST00000116876 Mir466j miRNA Interval_30176 chr11 90169647 90170252 + 0 NA Intergenic Intergenic 15178 ENSMUSG00000077706.1 ENSMUSG00000077706 ENSMUST00000104518 n-R5s72 rRNA Interval_158292 chr8 80873870 80874323 + 0 NA intron (ENSMUSG00000031714.9, intron 1 of 10) protein_coding-intron (ENSMUSG00000031714.9, intron 1 of 9) -5844 ENSMUSG00000109587.1 ENSMUSG00000109587 ENSMUST00000211421 Gm31105 antisense Interval_22551 chr11 11728347 11728533 + 0 NA intron (ENSMUSG00000018654.17, intron 3 of 3) protein_coding-intron (ENSMUSG00000018654.17, intron 3 of 6) -32001 ENSMUSG00000073145.6 ENSMUSG00000073145 ENSMUST00000132007 Gm12000 antisense Interval_168092 chr9 76203330 76203608 + 0 NA intron (ENSMUSG00000059383.14, intron 3 of 7) protein_coding-intron (ENSMUSG00000059383.14, intron 3 of 8) 10188 ENSMUSG00000059383.14 ENSMUSG00000059383 ENSMUST00000074880 Gfral protein_coding Interval_10428 chr1 170793209 170793952 + 0 NA exon (ENSMUSG00000026663.6, exon 1 of 1) protein_coding-exon (ENSMUSG00000026663.6, exon 1 of 1) 791 ENSMUSG00000026663.6 ENSMUSG00000026663 ENSMUST00000182787 Atf6 protein_coding Interval_168299 chr9 78512826 78513386 + 0 NA Intergenic Intergenic -7440 ENSMUSG00000111417.1 ENSMUSG00000111417 ENSMUST00000214586 Gm47430 lincRNA Interval_149101 chr7 93235825 93236277 + 0 NA Intergenic Intergenic -56406 ENSMUSG00000087412.4 ENSMUSG00000087412 ENSMUST00000140687 Gm15501 transcribed_processed_pseudogene Interval_172539 chrX 36195434 36196380 + 0 NA promoter-TSS (ENSMUSG00000036699.12) protein_coding-promoter-TSS (ENSMUSG00000036699.12) 3 ENSMUSG00000036699.12 ENSMUSG00000036699 ENSMUST00000115256 Zcchc12 protein_coding Interval_34681 chr12 8658758 8659117 + 0 NA Intergenic Intergenic -15197 ENSMUSG00000020594.14 ENSMUSG00000020594 ENSMUST00000171608 Pum2 protein_coding Interval_57321 chr15 8732739 8733077 + 0 NA Intergenic Intergenic -22499 ENSMUSG00000005360.14 ENSMUSG00000005360 ENSMUST00000126747 Slc1a3 protein_coding Interval_25934 chr11 52731948 52732214 + 0 NA Intergenic Intergenic -32553 ENSMUSG00000036264.9 ENSMUSG00000036264 ENSMUST00000036796 Fstl4 protein_coding Interval_168098 chr9 76401613 76402885 + 0 NA Intergenic Intergenic -78393 ENSMUSG00000032360.16 ENSMUSG00000032360 ENSMUST00000184200 Hcrtr2 protein_coding Interval_169123 chr9 92929717 92931287 + 0 NA Intergenic Intergenic 34670 ENSMUSG00000099823.1 ENSMUSG00000099823 ENSMUST00000187280 Gm28054 lincRNA Interval_101042 chr2 174463511 174464709 + 0 NA promoter-TSS (ENSMUSG00000016252.7) protein_coding-promoter-TSS (ENSMUSG00000016252.7) -21 ENSMUSG00000016252.7 ENSMUSG00000016252 ENSMUST00000153132 Atp5e protein_coding Interval_134386 chr6 28099281 28100093 + 0 NA intron (ENSMUSG00000024211.15, intron 2 of 5) protein_coding-intron (ENSMUSG00000024211.15, intron 1 of 9) 34698 ENSMUSG00000024211.15 ENSMUSG00000024211 ENSMUST00000202861 Grm8 protein_coding Interval_101458 chr2 181554601 181555080 + 0 NA exon (ENSMUSG00000000826.16, exon 5 of 5) protein_coding-exon (ENSMUSG00000000826.16, exon 5 of 5) 19636 ENSMUSG00000089917.7 ENSMUSG00000089917 ENSMUST00000131949 Uckl1 protein_coding Interval_130690 chr5 129772786 129773049 + 0 NA intron (ENSMUSG00000029446.14, intron 1 of 3) protein_coding-intron (ENSMUSG00000029446.14, intron 3 of 7) 14290 ENSMUSG00000029446.14 ENSMUSG00000029446 ENSMUST00000202374 Psph protein_coding Interval_53952 chr14 63735632 63736378 + 0 NA intron (ENSMUSG00000035067.9, intron 1 of 2) protein_coding-intron (ENSMUSG00000035067.9, intron 1 of 2) 8816 ENSMUSG00000076049.4 ENSMUSG00000076049 ENSMUST00000102094 Mir598 miRNA Interval_43368 chr13 29769307 29770194 + 0 NA intron (ENSMUSG00000006191.17, intron 5 of 10) protein_coding-intron (ENSMUSG00000006191.17, intron 5 of 15) -170533 ENSMUSG00000086893.1 ENSMUSG00000086893 ENSMUST00000144277 Gm11365 antisense Interval_21556 chr10 129860153 129860621 + 0 NA Intergenic Intergenic 5020 ENSMUSG00000052818.5 ENSMUSG00000052818 ENSMUST00000064893 Olfr813 protein_coding Interval_21196 chr10 127152258 127153395 + 0 NA Intergenic Intergenic -13033 ENSMUSG00000006731.10 ENSMUSG00000006731 ENSMUST00000220055 B4galnt1 protein_coding Interval_139952 chr6 113013675 113014040 + 0 NA Intergenic Intergenic 21735 ENSMUSG00000108215.1 ENSMUSG00000108215 ENSMUST00000203976 Gm8083 processed_pseudogene Interval_161072 chr8 117298413 117299297 + 0 NA intron (ENSMUSG00000034390.16, intron 1 of 10) protein_coding-intron (ENSMUSG00000034390.16, intron 1 of 20) -124561 ENSMUSG00000034390.16 ENSMUSG00000034390 ENSMUST00000212884 Cmip protein_coding Interval_1033 chr1 14232475 14233731 + 0 NA intron (ENSMUSG00000025932.14, intron 8 of 16) protein_coding-intron (ENSMUSG00000025932.14, intron 9 of 17) 22887 ENSMUSG00000102588.1 ENSMUSG00000102588 ENSMUST00000193605 Gm37444 TEC Interval_123869 chr5 36128612 36129255 + 0 NA intron (ENSMUSG00000029093.14, intron 3 of 7) protein_coding-intron (ENSMUSG00000029093.14, intron 3 of 26) -75088 ENSMUSG00000043430.5 ENSMUSG00000043430 ENSMUST00000052224 Psapl1 protein_coding Interval_67403 chr16 48343137 48343392 + 0 NA Intergenic Intergenic -25378 ENSMUSG00000116889.1 ENSMUSG00000116889 ENSMUST00000231810 Gm49771 processed_pseudogene Interval_158685 chr8 85220733 85221718 + 0 NA Intergenic Intergenic -4763 ENSMUSG00000051952.5 ENSMUSG00000051952 ENSMUST00000070849 Olfr371 protein_coding Interval_108242 chr3 122905217 122905447 + 0 NA intron (ENSMUSG00000097852.5, intron 3 of 5) antisense-intron (ENSMUSG00000097852.5, intron 3 of 6) 10260 ENSMUSG00000023057.5 ENSMUSG00000023057 ENSMUST00000023820 Fabp2 protein_coding Interval_79275 chr18 29494535 29494729 + 0 NA intron (ENSMUSG00000117618.1, intron 1 of 7) lincRNA-intron (ENSMUSG00000117618.1, intron 1 of 2) 1784 ENSMUSG00000117618.1 ENSMUSG00000117618 ENSMUST00000234290 4930578E11Rik lincRNA Interval_8675 chr1 146852647 146852828 + 0 NA intron (ENSMUSG00000035131.14, intron 7 of 7) protein_coding-intron (ENSMUSG00000035131.14, intron 7 of 7) -11041 ENSMUSG00000085822.2 ENSMUSG00000085822 ENSMUST00000123231 Gm15584 antisense Interval_102795 chr3 31079454 31079747 + 0 NA Intergenic Intergenic -15461 ENSMUSG00000027660.16 ENSMUSG00000027660 ENSMUST00000118204 Skil protein_coding Interval_167562 chr9 70485263 70485493 + 0 NA intron (ENSMUSG00000032217.13, intron 1 of 4) protein_coding-intron (ENSMUSG00000032217.13, intron 2 of 14) 9894 ENSMUSG00000065202.1 ENSMUSG00000065202 ENSMUST00000083268 Gm24615 snoRNA Interval_139110 chr6 95250445 95250985 + 0 NA intron (ENSMUSG00000107900.1, intron 1 of 1) processed_pseudogene-intron (ENSMUSG00000107900.1, intron 1 of 1) 414 ENSMUSG00000107900.1 ENSMUSG00000107900 ENSMUST00000203096 Gm5723 processed_pseudogene Interval_25405 chr11 47639735 47640979 + 0 NA intron (ENSMUSG00000020354.15, intron 1 of 2) protein_coding-intron (ENSMUSG00000020354.15, intron 1 of 2) -2888 ENSMUSG00000020354.15 ENSMUSG00000020354 ENSMUST00000128558 Sgcd protein_coding Interval_161789 chr8 122788615 122789150 + 0 NA intron (ENSMUSG00000015016.8, intron 5 of 9) protein_coding-intron (ENSMUSG00000015016.8, intron 5 of 9) 13396 ENSMUSG00000015016.8 ENSMUSG00000015016 ENSMUST00000212790 Acsf3 protein_coding Interval_87315 chr19 47613090 47613861 + 0 NA intron (ENSMUSG00000025060.15, intron 4 of 18) protein_coding-intron (ENSMUSG00000025060.15, intron 4 of 17) 3631 ENSMUSG00000086121.1 ENSMUSG00000086121 ENSMUST00000136557 Gm16068 antisense Interval_63340 chr15 100443310 100444345 + 0 NA Intergenic Intergenic -5857 ENSMUSG00000084688.1 ENSMUSG00000084688 ENSMUST00000122739 n-R5s43 rRNA Interval_8656 chr1 146354805 146355388 + 0 NA Intergenic Intergenic -65340 ENSMUSG00000090323.2 ENSMUSG00000090323 ENSMUST00000163646 Gm5263 processed_pseudogene Interval_170211 chr9 106227837 106228571 + 0 NA Intergenic Intergenic 5606 ENSMUSG00000045322.10 ENSMUSG00000045322 ENSMUST00000062241 Tlr9 protein_coding Interval_107035 chr3 103081135 103081697 + 0 NA intron (ENSMUSG00000070385.12, intron 3 of 4) protein_coding-intron (ENSMUSG00000070385.12, intron 4 of 15) -1460 ENSMUSG00000089075.1 ENSMUSG00000089075 ENSMUST00000158450 Gm23820 misc_RNA Interval_90328 chr2 29794376 29796325 + 0 NA promoter-TSS (ENSMUSG00000026798.10) protein_coding-promoter-TSS (ENSMUSG00000026798.10) 7130 ENSMUSG00000026798.10 ENSMUSG00000026798 ENSMUST00000138233 Coq4 protein_coding Interval_89858 chr2 26054939 26055932 + 0 NA TTS (ENSMUSG00000026932.14) protein_coding-TTS (ENSMUSG00000026932.14) -3575 ENSMUSG00000087515.1 ENSMUSG00000087515 ENSMUST00000137349 Gm13554 antisense Interval_8279 chr1 136908847 136909157 + 0 NA intron (ENSMUSG00000026398.14, intron 6 of 8) protein_coding-intron (ENSMUSG00000026398.14, intron 6 of 8) 40171 ENSMUSG00000026398.14 ENSMUSG00000026398 ENSMUST00000195428 Nr5a2 protein_coding Interval_106379 chr3 95761707 95762454 + 0 NA exon (ENSMUSG00000028106.13, exon 11 of 11) protein_coding-exon (ENSMUSG00000028106.13, exon 11 of 11) 14678 ENSMUSG00000028106.13 ENSMUSG00000028106 ENSMUST00000198741 Rprd2 protein_coding Interval_66654 chr16 35876361 35876638 + 0 NA Intergenic Intergenic -5117 ENSMUSG00000034422.14 ENSMUSG00000034422 ENSMUST00000135669 Parp14 protein_coding Interval_6348 chr1 106151387 106153059 + 0 NA TTS (ENSMUSG00000101583.1) lincRNA-TTS (ENSMUSG00000101583.1) 19301 ENSMUSG00000101583.1 ENSMUSG00000101583 ENSMUST00000190105 Gm20753 lincRNA Interval_96428 chr2 122455601 122456181 + 0 NA promoter-TSS (ENSMUSG00000027219.13) protein_coding-promoter-TSS (ENSMUSG00000027219.13) -508 ENSMUSG00000027219.13 ENSMUSG00000027219 ENSMUST00000153848 Slc28a2 protein_coding Interval_85815 chr19 32121563 32121788 + 0 NA Intergenic Intergenic 87598 ENSMUSG00000118064.1 ENSMUSG00000118064 ENSMUST00000235377 Gm50210 sense_intronic Interval_167208 chr9 66198306 66198517 + 0 NA intron (ENSMUSG00000032380.9, intron 2 of 9) protein_coding-intron (ENSMUSG00000032380.9, intron 2 of 11) 40185 ENSMUSG00000032380.9 ENSMUSG00000032380 ENSMUST00000129778 Dapk2 protein_coding Interval_7054 chr1 124141357 124141838 + 0 NA intron (ENSMUSG00000036815.17, intron 1 of 25) protein_coding-intron (ENSMUSG00000036815.17, intron 1 of 25) 237645 ENSMUSG00000103914.1 ENSMUSG00000103914 ENSMUST00000195141 Gm38073 TEC Interval_62389 chr15 91609639 91610484 + 0 NA Intergenic Intergenic 7376 ENSMUSG00000087965.1 ENSMUSG00000087965 ENSMUST00000157340 Gm25389 misc_RNA Interval_103051 chr3 34738335 34738670 + 0 NA Intergenic Intergenic -21840 ENSMUSG00000105153.4 ENSMUSG00000105153 ENSMUST00000198364 Gm3143 lincRNA Interval_150200 chr7 107943727 107943968 + 0 NA Intergenic Intergenic 8509 ENSMUSG00000108892.1 ENSMUSG00000108892 ENSMUST00000207265 Gm9449 processed_pseudogene Interval_11040 chr1 178692484 178692999 + 0 NA intron (ENSMUSG00000026494.12, intron 3 of 3) protein_coding-intron (ENSMUSG00000026494.12, intron 3 of 14) 55836 ENSMUSG00000064967.1 ENSMUSG00000064967 ENSMUST00000083033 Gm24405 snRNA Interval_109323 chr3 138926221 138926451 + 0 NA exon (ENSMUSG00000028149.12, exon 14 of 14) protein_coding-exon (ENSMUSG00000028149.12, exon 14 of 14) 51745 ENSMUSG00000104724.1 ENSMUSG00000104724 ENSMUST00000198292 Gm43162 TEC Interval_3940 chr1 64969989 64970262 + 0 NA Intergenic Intergenic 24479 ENSMUSG00000084416.3 ENSMUSG00000084416 ENSMUST00000120360 Rpl10a-ps1 processed_pseudogene Interval_104350 chr3 63905637 63905855 + 0 NA TTS (ENSMUSG00000103905.1) processed_pseudogene-TTS (ENSMUSG00000103905.1) 317 ENSMUSG00000103905.1 ENSMUSG00000103905 ENSMUST00000195036 Gm34379 processed_pseudogene Interval_47595 chr13 89726328 89727049 + 0 NA intron (ENSMUSG00000021614.16, intron 2 of 2) protein_coding-intron (ENSMUSG00000021614.16, intron 2 of 12) -12776 ENSMUSG00000089940.1 ENSMUSG00000089940 ENSMUST00000161917 Gm4117 antisense Interval_51717 chr14 31612150 31612439 + 0 NA intron (ENSMUSG00000021884.18, intron 13 of 14) protein_coding-intron (ENSMUSG00000021884.18, intron 15 of 16) 28584 ENSMUSG00000115022.1 ENSMUSG00000115022 ENSMUST00000167175 Gm49387 protein_coding Interval_83764 chr19 4456129 4456820 + 0 NA TTS (ENSMUSG00000049303.10) protein_coding-TTS (ENSMUSG00000049303.10) -17074 ENSMUSG00000041845.11 ENSMUSG00000041845 ENSMUST00000151420 Rhod protein_coding Interval_155031 chr8 25821862 25822740 + 0 NA TTS (ENSMUSG00000031575.18) protein_coding-TTS (ENSMUSG00000031575.18) 11244 ENSMUSG00000031575.18 ENSMUSG00000031575 ENSMUST00000211188 Ash2l protein_coding Interval_10544 chr1 171676807 171677333 + 0 NA exon (ENSMUSG00000103083.1, exon 2 of 2) processed_transcript-exon (ENSMUSG00000103083.1, exon 2 of 2) 2800 ENSMUSG00000103137.1 ENSMUSG00000103137 ENSMUST00000194280 Gm37981 processed_pseudogene Interval_133010 chr5 149264980 149265305 + 0 NA promoter-TSS (ENSMUSG00000060063.9) protein_coding-promoter-TSS (ENSMUSG00000060063.9) 16081 ENSMUSG00000064704.1 ENSMUSG00000064704 ENSMUST00000082770 n-R5s180 rRNA Interval_115140 chr4 91371075 91372503 + 0 NA exon (ENSMUSG00000008489.18, exon 1 of 2) protein_coding-exon (ENSMUSG00000008489.18, exon 1 of 2) 1574 ENSMUSG00000098563.1 ENSMUSG00000098563 ENSMUST00000183406 Mir6402 miRNA Interval_53528 chr14 58356124 58357318 + 0 NA intron (ENSMUSG00000114690.1, intron 2 of 2) lincRNA-intron (ENSMUSG00000114690.1, intron 2 of 2) 55739 ENSMUSG00000114690.1 ENSMUSG00000114690 ENSMUST00000225434 Gm33321 lincRNA Interval_119969 chr4 141158891 141159998 + 0 NA intron (ENSMUSG00000028920.9, intron 1 of 3) protein_coding-intron (ENSMUSG00000028920.9, intron 1 of 9) 11522 ENSMUSG00000028920.9 ENSMUSG00000028920 ENSMUST00000146768 Fbxo42 protein_coding Interval_26498 chr11 58167901 58168859 + 0 NA exon (ENSMUSG00000037275.14, exon 1 of 28) protein_coding-exon (ENSMUSG00000037275.14, exon 1 of 28) 159 ENSMUSG00000037275.14 ENSMUSG00000037275 ENSMUST00000134953 Gemin5 protein_coding Interval_153141 chr7 141622938 141623986 + 0 NA intron (ENSMUSG00000002957.11, intron 14 of 21) protein_coding-intron (ENSMUSG00000002957.11, intron 14 of 21) 2761 ENSMUSG00000098759.1 ENSMUSG00000098759 ENSMUST00000184158 Mir7063 miRNA Interval_72885 chr17 32916082 32916389 + 0 NA intron (ENSMUSG00000024292.15, intron 2 of 12) protein_coding-intron (ENSMUSG00000024292.15, intron 1 of 11) 1093 ENSMUSG00000024292.15 ENSMUSG00000024292 ENSMUST00000234797 Cyp4f14 protein_coding Interval_41858 chr13 3584623 3585157 + 0 NA exon (ENSMUSG00000033799.10, exon 12 of 20) protein_coding-exon (ENSMUSG00000033799.10, exon 12 of 20) 22505 ENSMUSG00000113894.1 ENSMUSG00000113894 ENSMUST00000223046 Gm48838 TEC Interval_47335 chr13 81632735 81633762 + 0 NA promoter-TSS (ENSMUSG00000069170.14) protein_coding-promoter-TSS (ENSMUSG00000069170.14) -24544 ENSMUSG00000035840.7 ENSMUSG00000035840 ENSMUST00000224420 Lysmd3 protein_coding Interval_162078 chr8 124924571 124925224 + 0 NA intron (ENSMUSG00000031987.6, intron 1 of 4) protein_coding-intron (ENSMUSG00000031987.6, intron 1 of 4) 23082 ENSMUSG00000031986.6 ENSMUSG00000031986 ENSMUST00000212724 Sprtn protein_coding Interval_59357 chr15 51864879 51865924 + 0 NA promoter-TSS (ENSMUSG00000022312.11) protein_coding-promoter-TSS (ENSMUSG00000022312.11) -12077 ENSMUSG00000022313.10 ENSMUSG00000022313 ENSMUST00000136129 Utp23 protein_coding Interval_81703 chr18 63708286 63709257 + 0 NA promoter-TSS (ENSMUSG00000040560.10) protein_coding-promoter-TSS (ENSMUSG00000040560.10) 23 ENSMUSG00000024583.3 ENSMUSG00000024583 ENSMUST00000236253 Txnl1 protein_coding Interval_168124 chr9 77379799 77380576 + 0 NA intron (ENSMUSG00000099170.1, intron 3 of 3) lincRNA-intron (ENSMUSG00000099170.1, intron 3 of 3) 19231 ENSMUSG00000099170.1 ENSMUSG00000099170 ENSMUST00000183878 5730403I07Rik lincRNA Interval_116093 chr4 107597723 107597921 + 0 NA intron (ENSMUSG00000034762.9, intron 1 of 4) protein_coding-intron (ENSMUSG00000034762.9, intron 4 of 10) 16619 ENSMUSG00000034762.9 ENSMUSG00000034762 ENSMUST00000125573 Glis1 protein_coding Interval_8941 chr1 152536444 152537644 + 0 NA intron (ENSMUSG00000026482.13, intron 12 of 18) protein_coding-intron (ENSMUSG00000026482.13, intron 11 of 17) 16000 ENSMUSG00000026482.13 ENSMUSG00000026482 ENSMUST00000149536 Rgl1 protein_coding Interval_52703 chr14 48734157 48734767 + 0 NA intron (ENSMUSG00000115579.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000098682.8, intron 4 of 4) 6347 ENSMUSG00000115579.1 ENSMUSG00000115579 ENSMUST00000227438 Gm49156 lincRNA Interval_143121 chr6 149490794 149491335 + 0 NA intron (ENSMUSG00000003452.15, intron 2 of 9) protein_coding-intron (ENSMUSG00000003452.15, intron 2 of 9) -56591 ENSMUSG00000082072.1 ENSMUSG00000082072 ENSMUST00000119145 Gm15785 processed_pseudogene Interval_8939 chr1 152524880 152525543 + 0 NA intron (ENSMUSG00000026482.13, intron 16 of 18) protein_coding-intron (ENSMUSG00000026482.13, intron 15 of 17) 27833 ENSMUSG00000026482.13 ENSMUSG00000026482 ENSMUST00000149536 Rgl1 protein_coding Interval_104250 chr3 62002124 62003299 + 0 NA Intergenic Intergenic 67083 ENSMUSG00000104489.1 ENSMUSG00000104489 ENSMUST00000193786 Gm9700 processed_pseudogene Interval_75023 chr17 61249997 61250194 + 0 NA Intergenic Intergenic -9556 ENSMUSG00000089610.1 ENSMUSG00000089610 ENSMUST00000158985 Gm23773 misc_RNA Interval_148726 chr7 84688932 84690529 + 0 NA promoter-TSS (ENSMUSG00000085236.3) antisense-promoter-TSS (ENSMUSG00000085236.3) 153 ENSMUSG00000030629.15 ENSMUSG00000030629 ENSMUST00000207975 Zfand6 protein_coding Interval_163769 chr9 25509558 25510161 + 0 NA intron (ENSMUSG00000036611.5, intron 2 of 7) protein_coding-intron (ENSMUSG00000036611.5, intron 2 of 7) 26992 ENSMUSG00000036611.5 ENSMUSG00000036611 ENSMUST00000156237 Eepd1 protein_coding Interval_22576 chr11 11885684 11886268 + 0 NA TTS (ENSMUSG00000086391.1) antisense-TTS (ENSMUSG00000086391.1) 12168 ENSMUSG00000020182.16 ENSMUSG00000020182 ENSMUST00000134121 Ddc protein_coding Interval_48831 chr13 103794345 103795437 + 0 NA Intergenic Intergenic -25543 ENSMUSG00000032621.8 ENSMUSG00000032621 ENSMUST00000211139 Srek1 protein_coding Interval_159643 chr8 95973594 95974433 + 0 NA Intergenic Intergenic 52484 ENSMUSG00000110506.1 ENSMUSG00000110506 ENSMUST00000212919 Gm8637 processed_pseudogene Interval_124242 chr5 41893046 41894603 + 0 NA Intergenic Intergenic 2482 ENSMUSG00000098264.1 ENSMUSG00000098264 ENSMUST00000183685 Mir6414 miRNA Interval_109212 chr3 137938501 137939092 + 0 NA intron (ENSMUSG00000028159.14, intron 4 of 6) protein_coding-intron (ENSMUSG00000028159.14, intron 6 of 8) 12621 ENSMUSG00000091512.5 ENSMUSG00000091512 ENSMUST00000200656 Lamtor3 protein_coding Interval_162419 chr8 128491470 128492006 + 0 NA intron (ENSMUSG00000025810.9, intron 12 of 16) protein_coding-intron (ENSMUSG00000025810.9, intron 12 of 16) 132341 ENSMUSG00000025810.9 ENSMUSG00000025810 ENSMUST00000212933 Nrp1 protein_coding Interval_174326 chrX 144381968 144382796 + 0 NA exon (ENSMUSG00000041710.4, exon 11 of 11) protein_coding-exon (ENSMUSG00000041710.4, exon 11 of 11) -61127 ENSMUSG00000080922.1 ENSMUSG00000080922 ENSMUST00000121333 Gm2214 processed_pseudogene Interval_24282 chr11 32087215 32088333 + 0 NA Intergenic Intergenic 13454 ENSMUSG00000086386.1 ENSMUSG00000086386 ENSMUST00000145338 Gm12108 lincRNA Interval_158006 chr8 77906763 77908029 + 0 NA Intergenic Intergenic 99861 ENSMUSG00000087761.1 ENSMUSG00000087761 ENSMUST00000157136 Gm23981 snRNA Interval_156373 chr8 47778264 47778538 + 0 NA TTS (ENSMUSG00000110539.1) lincRNA-TTS (ENSMUSG00000110539.1) 4846 ENSMUSG00000110539.1 ENSMUSG00000110539 ENSMUST00000211965 Gm45864 lincRNA Interval_12703 chr10 4391987 4392256 + 0 NA exon (ENSMUSG00000095123.1, exon 1 of 1) lincRNA-exon (ENSMUSG00000095123.1, exon 1 of 1) 534 ENSMUSG00000095123.1 ENSMUSG00000095123 ENSMUST00000178920 Gm21781 lincRNA Interval_121198 chr4 153980483 153980712 + 0 NA intron (ENSMUSG00000039523.16, intron 2 of 21) protein_coding-intron (ENSMUSG00000039523.16, intron 2 of 21) -7870 ENSMUSG00000039523.16 ENSMUSG00000039523 ENSMUST00000155414 Cep104 protein_coding Interval_132106 chr5 142794698 142795507 + 0 NA intron (ENSMUSG00000039477.16, intron 2 of 2) protein_coding-intron (ENSMUSG00000039477.16, intron 2 of 15) -29080 ENSMUSG00000039477.16 ENSMUSG00000039477 ENSMUST00000198181 Tnrc18 protein_coding Interval_76118 chr17 75118584 75119094 + 0 NA intron (ENSMUSG00000001870.16, intron 3 of 34) protein_coding-intron (ENSMUSG00000001870.16, intron 3 of 33) -46368 ENSMUSG00000084025.1 ENSMUSG00000084025 ENSMUST00000120159 Gm6276 processed_pseudogene Interval_91933 chr2 51735336 51735580 + 0 NA Intergenic Intergenic -3449 ENSMUSG00000085014.1 ENSMUSG00000085014 ENSMUST00000143870 Gm13490 lincRNA Interval_27220 chr11 64278450 64278742 + 0 NA Intergenic Intergenic 114023 ENSMUSG00000087622.1 ENSMUSG00000087622 ENSMUST00000145095 Gm12290 lincRNA Interval_135487 chr6 39585820 39586020 + 0 NA TTS (ENSMUSG00000046947.12) protein_coding-TTS (ENSMUSG00000046947.12) 167 ENSMUSG00000107071.1 ENSMUSG00000107071 ENSMUST00000126621 Gm42420 protein_coding Interval_110636 chr4 5576941 5577133 + 0 NA Intergenic Intergenic -25814 ENSMUSG00000087099.1 ENSMUSG00000087099 ENSMUST00000131675 Gm11782 lincRNA Interval_10324 chr1 169169621 169169835 + 0 NA Intergenic Intergenic -150639 ENSMUSG00000098829.1 ENSMUSG00000098829 ENSMUST00000184979 Mir6354 miRNA Interval_34660 chr12 8451906 8452136 + 0 NA Intergenic Intergenic 2897 ENSMUSG00000112664.1 ENSMUSG00000112664 ENSMUST00000219269 Gm48076 TEC Interval_140364 chr6 117242372 117242693 + 0 NA Intergenic Intergenic -28466 ENSMUSG00000090549.2 ENSMUSG00000090549 ENSMUST00000170447 Rpl28-ps4 processed_pseudogene Interval_6745 chr1 119147352 119148464 + 0 NA Intergenic Intergenic -9678 ENSMUSG00000096939.1 ENSMUSG00000096939 ENSMUST00000181691 Gm8321 processed_pseudogene Interval_149773 chr7 101374121 101374994 + 0 NA intron (ENSMUSG00000032812.18, intron 3 of 33) protein_coding-intron (ENSMUSG00000032812.18, intron 1 of 32) -11051 ENSMUSG00000032812.18 ENSMUSG00000032812 ENSMUST00000124637 Arap1 protein_coding Interval_47725 chr13 91814388 91815630 + 0 NA Intergenic Intergenic -14014 ENSMUSG00000021621.15 ENSMUSG00000021621 ENSMUST00000179368 Zcchc9 protein_coding Interval_490 chr1 6358761 6360327 + 0 NA intron (ENSMUSG00000087247.3, intron 1 of 4) protein_coding-intron (ENSMUSG00000087247.3, intron 1 of 4) 326 ENSMUSG00000087247.3 ENSMUSG00000087247 ENSMUST00000133144 Alkal1 protein_coding Interval_31685 chr11 102244895 102245526 + 0 NA Intergenic Intergenic -10446 ENSMUSG00000034773.16 ENSMUSG00000034773 ENSMUST00000140040 Hrob protein_coding Interval_36049 chr12 33936458 33937292 + 0 NA Intergenic Intergenic -8419 ENSMUSG00000114082.1 ENSMUSG00000114082 ENSMUST00000222601 Gm40383 bidirectional_promoter_lncRNA Interval_86065 chr19 36197588 36198262 + 0 NA intron (ENSMUSG00000117998.1, intron 2 of 3) lincRNA-intron (ENSMUSG00000117998.1, intron 2 of 3) 15345 ENSMUSG00000117998.1 ENSMUSG00000117998 ENSMUST00000236660 Gm32081 lincRNA Interval_132494 chr5 145342253 145342652 + 0 NA Intergenic Intergenic -2827 ENSMUSG00000070419.11 ENSMUSG00000070419 ENSMUST00000079268 Cyp3a57 protein_coding Interval_111069 chr4 11611205 11611885 + 0 NA TTS (ENSMUSG00000078773.11) protein_coding-TTS (ENSMUSG00000078773.11) 3462 ENSMUSG00000086103.1 ENSMUSG00000086103 ENSMUST00000148576 Gm11832 antisense Interval_80633 chr18 44890817 44891603 + 0 NA Intergenic Intergenic 35975 ENSMUSG00000034653.11 ENSMUSG00000034653 ENSMUST00000202176 Ythdc2 protein_coding Interval_120370 chr4 148164114 148164563 + 0 NA exon (ENSMUSG00000041556.8, exon 2 of 6) protein_coding-exon (ENSMUSG00000041556.8, exon 2 of 6) 3717 ENSMUSG00000041556.8 ENSMUSG00000041556 ENSMUST00000047951 Fbxo2 protein_coding Interval_167638 chr9 71463704 71464153 + 0 NA Intergenic Intergenic 21977 ENSMUSG00000032199.13 ENSMUSG00000032199 ENSMUST00000233263 Polr2m protein_coding Interval_156328 chr8 47433246 47433719 + 0 NA intron (ENSMUSG00000038143.16, intron 2 of 7) protein_coding-intron (ENSMUSG00000038143.16, intron 2 of 7) -6936 ENSMUSG00000092710.1 ENSMUSG00000092710 ENSMUST00000174969 Gm22857 snoRNA Interval_33540 chr11 117103513 117104052 + 0 NA Intergenic Intergenic -6755 ENSMUSG00000087057.7 ENSMUSG00000087057 ENSMUST00000147186 Gm11730 antisense Interval_42194 chr13 9753685 9754550 + 0 NA exon (ENSMUSG00000113650.1, exon 1 of 1) TEC-exon (ENSMUSG00000113650.1, exon 1 of 1) 2762 ENSMUSG00000113650.1 ENSMUSG00000113650 ENSMUST00000221759 Gm47826 TEC Interval_112422 chr4 41164657 41166573 + 0 NA intron (ENSMUSG00000036241.3, intron 1 of 4) protein_coding-intron (ENSMUSG00000036241.3, intron 1 of 4) -3031 ENSMUSG00000082186.2 ENSMUSG00000082186 ENSMUST00000121384 Gm12403 processed_pseudogene Interval_123831 chr5 35806951 35807147 + 0 NA exon (ENSMUSG00000029095.17, exon 4 of 20) protein_coding-exon (ENSMUSG00000029095.17, exon 4 of 20) -50845 ENSMUSG00000029095.17 ENSMUSG00000029095 ENSMUST00000153529 Ablim2 protein_coding Interval_146395 chr7 45674632 45674948 + 0 NA Intergenic Intergenic -8482 ENSMUSG00000055978.5 ENSMUSG00000055978 ENSMUST00000210470 Fut2 protein_coding Interval_26071 chr11 53922841 53923078 + 0 NA Intergenic Intergenic -4108 ENSMUSG00000118395.1 ENSMUSG00000118395 ENSMUST00000238196 Gm50459 unprocessed_pseudogene Interval_73836 chr17 44350157 44351189 + 0 NA Intergenic Intergenic 17230 ENSMUSG00000117106.1 ENSMUSG00000117106 ENSMUST00000233110 Gm49872 lincRNA Interval_115108 chr4 90061870 90062114 + 0 NA Intergenic Intergenic -123535 ENSMUSG00000085690.1 ENSMUSG00000085690 ENSMUST00000145751 Gm12629 lincRNA Interval_113847 chr4 59328973 59331418 + 0 NA intron (ENSMUSG00000038578.15, intron 1 of 1) protein_coding-intron (ENSMUSG00000038578.15, intron 13 of 16) -14229 ENSMUSG00000038578.15 ENSMUSG00000038578 ENSMUST00000136077 Susd1 protein_coding Interval_135328 chr6 38361222 38362693 + 0 NA Intergenic Intergenic 3945 ENSMUSG00000106836.1 ENSMUSG00000106836 ENSMUST00000201250 Gm43578 processed_pseudogene Interval_159795 chr8 103702371 103702694 + 0 NA Intergenic Intergenic 98733 ENSMUSG00000110336.1 ENSMUSG00000110336 ENSMUST00000211119 4933400L20Rik lincRNA Interval_171811 chr9 121392103 121393358 + 0 NA TTS (ENSMUSG00000032536.12) protein_coding-TTS (ENSMUSG00000032536.12) 46174 ENSMUSG00000110738.1 ENSMUSG00000110738 ENSMUST00000214815 Gm47092 TEC Interval_75803 chr17 71500672 71501242 + 0 NA intron (ENSMUSG00000024056.10, intron 7 of 9) protein_coding-intron (ENSMUSG00000024056.10, intron 14 of 16) 5586 ENSMUSG00000089105.1 ENSMUSG00000089105 ENSMUST00000158480 Gm23115 rRNA Interval_82238 chr18 69507687 69508598 + 0 NA intron (ENSMUSG00000053477.17, intron 1 of 5) protein_coding-intron (ENSMUSG00000053477.17, intron 6 of 20) -14308 ENSMUSG00000053477.17 ENSMUSG00000053477 ENSMUST00000136019 Tcf4 protein_coding Interval_139520 chr6 100750415 100750748 + 0 NA intron (ENSMUSG00000030074.9, intron 3 of 6) protein_coding-intron (ENSMUSG00000030074.9, intron 3 of 6) 24347 ENSMUSG00000084157.2 ENSMUSG00000084157 ENSMUST00000117806 Gm15576 processed_pseudogene Interval_67859 chr16 58210370 58210548 + 0 NA Intergenic Intergenic -27645 ENSMUSG00000116717.1 ENSMUSG00000116717 ENSMUST00000231686 Gm49574 lincRNA Interval_56532 chr14 120083992 120086048 + 0 NA Intergenic Intergenic 7510 ENSMUSG00000115133.1 ENSMUSG00000115133 ENSMUST00000226914 Gm20167 processed_pseudogene Interval_131 GL456378.1 5246 6336 + 0 NA NA NA NA NA Interval_31509 chr11 101086932 101088048 + 0 NA TTS (ENSMUSG00000001755.12) protein_coding-TTS (ENSMUSG00000001755.12) 186 ENSMUSG00000017801.15 ENSMUSG00000017801 ENSMUST00000143344 Mlx protein_coding Interval_141356 chr6 127596802 127597310 + 0 NA intron (ENSMUSG00000061414.8, intron 2 of 18) protein_coding-intron (ENSMUSG00000061414.8, intron 1 of 6) 35718 ENSMUSG00000061414.8 ENSMUSG00000061414 ENSMUST00000071563 Cracr2a protein_coding Interval_22640 chr11 12441381 12441733 + 0 NA intron (ENSMUSG00000020173.17, intron 1 of 11) protein_coding-intron (ENSMUSG00000020173.17, intron 1 of 14) -29413 ENSMUSG00000020173.17 ENSMUSG00000020173 ENSMUST00000146067 Cobl protein_coding Interval_165998 chr9 55292036 55292391 + 0 NA intron (ENSMUSG00000032311.17, intron 2 of 8) protein_coding-intron (ENSMUSG00000032311.17, intron 2 of 8) -8588 ENSMUSG00000032311.17 ENSMUSG00000032311 ENSMUST00000133659 Nrg4 protein_coding Interval_56128 chr14 106217488 106218082 + 0 NA Intergenic Intergenic -5807 ENSMUSG00000115501.1 ENSMUSG00000115501 ENSMUST00000226534 Gm48971 processed_pseudogene Interval_172594 chrX 37190532 37192221 + 0 NA promoter-TSS (ENSMUSG00000016427.7) protein_coding-promoter-TSS (ENSMUSG00000016427.7) 131 ENSMUSG00000036537.6 ENSMUSG00000036537 ENSMUST00000046433 Rnf113a1 protein_coding Interval_67832 chr16 57572202 57572531 + 0 NA exon (ENSMUSG00000043336.14, exon 2 of 2) protein_coding-exon (ENSMUSG00000043336.14, exon 2 of 2) 34498 ENSMUSG00000022748.8 ENSMUSG00000022748 ENSMUST00000232413 Cmss1 protein_coding Interval_66107 chr16 31651388 31651687 + 0 NA Intergenic Intergenic -27704 ENSMUSG00000116781.1 ENSMUSG00000116781 ENSMUST00000232316 Gm49712 TEC Interval_93574 chr2 74595584 74595930 + 0 NA Intergenic Intergenic -3848 ENSMUSG00000075279.5 ENSMUSG00000075279 ENSMUST00000173086 Mrpl23-ps1 processed_pseudogene Interval_147140 chr7 63768467 63768840 + 0 NA Intergenic Intergenic 2779 ENSMUSG00000108421.1 ENSMUSG00000108421 ENSMUST00000206886 Gm44718 lincRNA Interval_14005 chr10 25411783 25412303 + 0 NA intron (ENSMUSG00000019978.16, intron 1 of 10) protein_coding-intron (ENSMUSG00000019978.16, intron 1 of 19) 4142 ENSMUSG00000112445.1 ENSMUSG00000112445 ENSMUST00000219193 Gm47830 processed_pseudogene Interval_54262 chr14 66963899 66964214 + 0 NA Intergenic Intergenic -3126 ENSMUSG00000114558.1 ENSMUSG00000114558 ENSMUST00000224795 Gm9570 processed_pseudogene Interval_60101 chr15 65585682 65585960 + 0 NA Intergenic Intergenic 102327 ENSMUSG00000115402.1 ENSMUSG00000115402 ENSMUST00000227091 Gm49243 processed_pseudogene Interval_113984 chr4 62263489 62264066 + 0 NA promoter-TSS (ENSMUSG00000096713.1) snRNA-promoter-TSS (ENSMUSG00000096713.1) -537 ENSMUSG00000096713.1 ENSMUSG00000096713 ENSMUST00000180367 Gm23148 snRNA Interval_91860 chr2 50534910 50535484 + 0 NA Intergenic Intergenic -12210 ENSMUSG00000083449.1 ENSMUSG00000083449 ENSMUST00000122240 Gm13487 processed_pseudogene Interval_60154 chr15 66637150 66637351 + 0 NA TTS (ENSMUSG00000072501.5) protein_coding-TTS (ENSMUSG00000072501.5) 6362 ENSMUSG00000072501.5 ENSMUSG00000072501 ENSMUST00000231177 Phf20l1 protein_coding Interval_6054 chr1 95239066 95239282 + 0 NA Intergenic Intergenic 17636 ENSMUSG00000099592.1 ENSMUSG00000099592 ENSMUST00000190584 Gm5264 processed_pseudogene Interval_104598 chr3 68643051 68643365 + 0 NA Intergenic Intergenic -50813 ENSMUSG00000027776.12 ENSMUSG00000027776 ENSMUST00000195517 Il12a protein_coding Interval_165875 chr9 54098535 54099175 + 0 NA Intergenic Intergenic -30483 ENSMUSG00000074345.4 ENSMUSG00000074345 ENSMUST00000214656 Tnfaip8l3 protein_coding Interval_11772 chr1 185331709 185332418 + 0 NA promoter-TSS (ENSMUSG00000026617.16) protein_coding-promoter-TSS (ENSMUSG00000026617.16) -109 ENSMUSG00000026617.16 ENSMUSG00000026617 ENSMUST00000137757 Bpnt1 protein_coding Interval_25501 chr11 49271201 49271757 + 0 NA Intergenic Intergenic -6825 ENSMUSG00000059864.2 ENSMUSG00000059864 ENSMUST00000078932 Olfr1393 protein_coding Interval_105909 chr3 90010475 90011206 + 0 NA promoter-TSS (ENSMUSG00000077569.1) snoRNA-promoter-TSS (ENSMUSG00000077569.1) -110 ENSMUSG00000077569.1 ENSMUSG00000077569 ENSMUST00000104381 Gm24608 snoRNA Interval_126941 chr5 97812706 97813444 + 0 NA Intergenic Intergenic 183020 ENSMUSG00000029338.13 ENSMUSG00000029338 ENSMUST00000202736 Antxr2 protein_coding Interval_44511 chr13 45538823 45539822 + 0 NA intron (ENSMUSG00000000253.13, intron 1 of 1) protein_coding-intron (ENSMUSG00000000253.13, intron 7 of 8) -6831 ENSMUSG00000000253.13 ENSMUSG00000000253 ENSMUST00000222227 Gmpr protein_coding Interval_96132 chr2 119952013 119952248 + 0 NA intron (ENSMUSG00000033943.15, intron 17 of 20) protein_coding-intron (ENSMUSG00000033943.15, intron 19 of 24) -20773 ENSMUSG00000033902.12 ENSMUSG00000033902 ENSMUST00000148161 Mapkbp1 protein_coding Interval_173697 chrX 102118919 102119959 + 0 NA promoter-TSS (ENSMUSG00000079480.3) protein_coding-promoter-TSS (ENSMUSG00000079480.3) -130 ENSMUSG00000079480.3 ENSMUSG00000079480 ENSMUST00000144367 Pin4 protein_coding Interval_58645 chr15 36780892 36781392 + 0 NA intron (ENSMUSG00000022285.17, intron 2 of 3) protein_coding-intron (ENSMUSG00000022285.17, intron 3 of 6) 15787 ENSMUSG00000022285.17 ENSMUSG00000022285 ENSMUST00000227067 Ywhaz protein_coding Interval_56093 chr14 105628503 105629373 + 0 NA intron (ENSMUSG00000110080.1, intron 3 of 4) processed_transcript-intron (ENSMUSG00000110080.1, intron 2 of 5) -5168 ENSMUSG00000098780.1 ENSMUSG00000098780 ENSMUST00000184405 Mir6390 miRNA Interval_56429 chr14 118690231 118690731 + 0 NA intron (ENSMUSG00000032849.14, intron 1 of 29) protein_coding-intron (ENSMUSG00000032849.14, intron 1 of 30) 9011 ENSMUSG00000032849.14 ENSMUSG00000032849 ENSMUST00000227480 Abcc4 protein_coding Interval_113976 chr4 62215678 62217291 + 0 NA intron (ENSMUSG00000028389.12, intron 2 of 2) protein_coding-intron (ENSMUSG00000028389.12, intron 2 of 2) -8282 ENSMUSG00000028389.12 ENSMUSG00000028389 ENSMUST00000212325 Zfp37 protein_coding Interval_138531 chr6 88959849 88960540 + 0 NA intron (ENSMUSG00000055403.13, intron 1 of 2) lincRNA-intron (ENSMUSG00000055403.13, intron 1 of 2) 9511 ENSMUSG00000055403.13 ENSMUSG00000055403 ENSMUST00000153981 4933427D06Rik lincRNA Interval_81858 chr18 65411148 65411566 + 0 NA Intergenic Intergenic -3642 ENSMUSG00000118078.1 ENSMUSG00000118078 ENSMUST00000237179 Gm50228 lincRNA Interval_9740 chr1 161598234 161598623 + 0 NA Intergenic Intergenic -45762 ENSMUSG00000089353.1 ENSMUSG00000089353 ENSMUST00000158728 Gm25488 rRNA Interval_168275 chr9 78371531 78371734 + 0 NA Intergenic Intergenic -3455 ENSMUSG00000060461.5 ENSMUSG00000060461 ENSMUST00000071991 Dppa5a protein_coding Interval_47184 chr13 77346117 77346577 + 0 NA intron (ENSMUSG00000071252.6, intron 19 of 19) protein_coding-intron (ENSMUSG00000071252.6, intron 19 of 19) 176969 ENSMUSG00000114256.1 ENSMUSG00000114256 ENSMUST00000225012 Gm29844 processed_pseudogene Interval_101760 chr3 9450082 9450988 + 0 NA intron (ENSMUSG00000040209.12, intron 4 of 9) protein_coding-intron (ENSMUSG00000040209.12, intron 5 of 8) -45633 ENSMUSG00000103485.1 ENSMUSG00000103485 ENSMUST00000192900 Gm38001 TEC Interval_64392 chr16 11065738 11067030 + 0 NA promoter-TSS (ENSMUSG00000037972.7) protein_coding-promoter-TSS (ENSMUSG00000037972.7) -262 ENSMUSG00000022500.15 ENSMUSG00000022500 ENSMUST00000230709 Litaf protein_coding Interval_165853 chr9 53825223 53825913 + 0 NA Intergenic Intergenic 14851 ENSMUSG00000042195.9 ENSMUSG00000042195 ENSMUST00000216515 Slc35f2 protein_coding Interval_124731 chr5 53594287 53594582 + 0 NA intron (ENSMUSG00000039191.12, intron 1 of 10) protein_coding-intron (ENSMUSG00000039191.12, intron 1 of 10) -44198 ENSMUSG00000039191.12 ENSMUSG00000039191 ENSMUST00000202092 Rbpj protein_coding Interval_174072 chrX 134305088 134305866 + 0 NA exon (ENSMUSG00000033578.7, exon 2 of 2) protein_coding-exon (ENSMUSG00000033578.7, exon 2 of 2) -6521 ENSMUSG00000031262.12 ENSMUSG00000031262 ENSMUST00000125604 Cenpi protein_coding Interval_108162 chr3 122078070 122078474 + 0 NA intron (ENSMUSG00000028125.14, intron 1 of 6) protein_coding-intron (ENSMUSG00000028125.14, intron 6 of 49) 54442 ENSMUSG00000104869.1 ENSMUSG00000104869 ENSMUST00000197868 Gm42544 TEC Interval_99720 chr2 164485906 164487495 + 0 NA promoter-TSS (ENSMUSG00000017734.15) protein_coding-promoter-TSS (ENSMUSG00000017734.15) 245 ENSMUSG00000017734.15 ENSMUSG00000017734 ENSMUST00000017878 Dbndd2 protein_coding Interval_126084 chr5 77276048 77276664 + 0 NA intron (ENSMUSG00000029249.15, intron 3 of 3) protein_coding-intron (ENSMUSG00000029249.15, intron 3 of 3) 3599 ENSMUSG00000093061.1 ENSMUSG00000093061 ENSMUST00000175320 Mir5098 miRNA Interval_156231 chr8 46292251 46295074 + 0 NA promoter-TSS (ENSMUSG00000047171.8) protein_coding-promoter-TSS (ENSMUSG00000047171.8) -327 ENSMUSG00000047171.8 ENSMUSG00000047171 ENSMUST00000210696 Helt protein_coding Interval_124135 chr5 38588688 38589584 + 0 NA Intergenic Intergenic 14105 ENSMUSG00000086422.1 ENSMUSG00000086422 ENSMUST00000147322 4930421P07Rik processed_pseudogene Interval_151956 chr7 127768478 127770154 + 0 NA promoter-TSS (ENSMUSG00000043964.14) protein_coding-promoter-TSS (ENSMUSG00000043964.14) -499 ENSMUSG00000043964.14 ENSMUSG00000043964 ENSMUST00000121504 Orai3 protein_coding Interval_128078 chr5 110733579 110733910 + 0 NA exon (ENSMUSG00000029505.17, exon 7 of 52) protein_coding-exon (ENSMUSG00000029505.17, exon 7 of 52) -23341 ENSMUSG00000096238.1 ENSMUSG00000096238 ENSMUST00000178031 Gm22583 snRNA Interval_156380 chr8 47829546 47829975 + 0 NA intron (ENSMUSG00000031563.8, intron 22 of 22) protein_coding-intron (ENSMUSG00000031563.8, intron 22 of 22) 5278 ENSMUSG00000038064.7 ENSMUSG00000038064 ENSMUST00000038693 Cldn22 protein_coding Interval_135807 chr6 47481154 47481557 + 0 NA intron (ENSMUSG00000029686.15, intron 1 of 1) protein_coding-intron (ENSMUSG00000029686.15, intron 1 of 21) -27035 ENSMUSG00000052241.3 ENSMUSG00000052241 ENSMUST00000064013 A930035D04Rik pseudogene Interval_42871 chr13 20860444 20861263 + 0 NA intron (ENSMUSG00000021322.8, intron 4 of 20) protein_coding-intron (ENSMUSG00000021322.8, intron 4 of 20) 16099 ENSMUSG00000088989.1 ENSMUSG00000088989 ENSMUST00000158364 Gm25605 snRNA Interval_152830 chr7 138465339 138465505 + 0 NA Intergenic Intergenic 51645 ENSMUSG00000110354.1 ENSMUSG00000110354 ENSMUST00000211580 Gm45686 lincRNA Interval_88946 chr2 13338570 13339032 + 0 NA intron (ENSMUSG00000026726.10, intron 43 of 66) protein_coding-intron (ENSMUSG00000026726.10, intron 43 of 66) 67199 ENSMUSG00000086358.2 ENSMUSG00000086358 ENSMUST00000193685 Gm13270 processed_transcript Interval_66547 chr16 35021862 35023123 + 0 NA promoter-TSS (ENSMUSG00000035376.10) protein_coding-promoter-TSS (ENSMUSG00000035376.10) 408 ENSMUSG00000116840.1 ENSMUSG00000116840 ENSMUST00000232358 Gm21691 antisense Interval_72762 chr17 32018870 32019571 + 0 NA intron (ENSMUSG00000002076.12, intron 4 of 8) protein_coding-intron (ENSMUSG00000002076.12, intron 3 of 7) -8718 ENSMUSG00000088406.1 ENSMUSG00000088406 ENSMUST00000157781 Gm25883 misc_RNA Interval_15972 chr10 59777460 59777718 + 0 NA intron (ENSMUSG00000020111.15, intron 6 of 12) protein_coding-intron (ENSMUSG00000020111.15, intron 8 of 13) 22665 ENSMUSG00000091184.1 ENSMUSG00000091184 ENSMUST00000168284 Gm17059 antisense Interval_5589 chr1 90012856 90013744 + 0 NA intron (ENSMUSG00000067081.13, intron 1 of 5) protein_coding-intron (ENSMUSG00000067081.13, intron 1 of 5) -16848 ENSMUSG00000067081.13 ENSMUSG00000067081 ENSMUST00000151330 Asb18 protein_coding Interval_19057 chr10 94124230 94124594 + 0 NA intron (ENSMUSG00000020021.4, intron 11 of 20) protein_coding-intron (ENSMUSG00000020021.4, intron 11 of 20) 15673 ENSMUSG00000111539.1 ENSMUSG00000111539 ENSMUST00000214721 Gm48372 TEC Interval_53441 chr14 57534337 57534839 + 0 NA intron (ENSMUSG00000050222.11, intron 2 of 2) protein_coding-intron (ENSMUSG00000050222.11, intron 2 of 2) 9811 ENSMUSG00000050222.11 ENSMUSG00000050222 ENSMUST00000089494 Il17d protein_coding Interval_132570 chr5 146393507 146394791 + 0 NA intron (ENSMUSG00000029636.11, intron 1 of 9) protein_coding-intron (ENSMUSG00000029636.11, intron 1 of 9) -61460 ENSMUSG00000029636.11 ENSMUSG00000029636 ENSMUST00000238592 Wasf3 protein_coding Interval_63577 chr15 102150332 102151199 + 0 NA promoter-TSS (ENSMUSG00000023045.13) protein_coding-promoter-TSS (ENSMUSG00000023045.13) -351 ENSMUSG00000023045.13 ENSMUSG00000023045 ENSMUST00000160465 Soat2 protein_coding Interval_115179 chr4 93505234 93506280 + 0 NA intron (ENSMUSG00000084833.1, intron 2 of 2) lincRNA-intron (ENSMUSG00000084833.1, intron 2 of 2) 39520 ENSMUSG00000064850.1 ENSMUSG00000064850 ENSMUST00000082916 Gm23443 snoRNA Interval_70912 chr17 15825532 15827150 + 0 NA exon (ENSMUSG00000048027.9, exon 1 of 3) protein_coding-exon (ENSMUSG00000048027.9, exon 1 of 3) 4544 ENSMUSG00000048027.9 ENSMUSG00000048027 ENSMUST00000231985 Rgmb protein_coding Interval_96918 chr2 129495897 129496382 + 0 NA intron (ENSMUSG00000086637.1, intron 2 of 2) protein_coding-intron (ENSMUSG00000043727.5, intron 1 of 6) 19668 ENSMUSG00000086637.1 ENSMUSG00000086637 ENSMUST00000139058 Gm14040 sense_intronic Interval_18515 chr10 86843981 86844428 + 0 NA intron (ENSMUSG00000035459.18, intron 26 of 27) protein_coding-intron (ENSMUSG00000035459.18, intron 67 of 68) 5110 ENSMUSG00000089959.1 ENSMUSG00000089959 ENSMUST00000159445 Gm16268 antisense Interval_78889 chr18 21168764 21169395 + 0 NA intron (ENSMUSG00000042680.8, intron 2 of 4) protein_coding-intron (ENSMUSG00000042680.8, intron 2 of 5) -91970 ENSMUSG00000062962.5 ENSMUSG00000062962 ENSMUST00000084199 Gm6378 processed_pseudogene Interval_72138 chr17 28237016 28237329 + 0 NA intron (ENSMUSG00000002250.16, intron 2 of 6) protein_coding-intron (ENSMUSG00000002250.16, intron 2 of 7) 4398 ENSMUSG00000002250.16 ENSMUSG00000002250 ENSMUST00000233383 Ppard protein_coding Interval_130048 chr5 123904054 123904451 + 0 NA Intergenic Intergenic -3023 ENSMUSG00000023106.15 ENSMUSG00000023106 ENSMUST00000166233 Denr protein_coding Interval_146451 chr7 46012794 46014279 + 0 NA intron (ENSMUSG00000030834.7, intron 9 of 30) protein_coding-intron (ENSMUSG00000030834.7, intron 9 of 30) -12467 ENSMUSG00000030834.7 ENSMUSG00000030834 ENSMUST00000211780 Abcc6 protein_coding Interval_120563 chr4 149402880 149403546 + 0 NA intron (ENSMUSG00000028960.20, intron 1 of 29) protein_coding-intron (ENSMUSG00000028960.20, intron 1 of 9) 22772 ENSMUSG00000028960.20 ENSMUSG00000028960 ENSMUST00000131986 Ube4b protein_coding Interval_147283 chr7 65469316 65470761 + 0 NA intron (ENSMUSG00000030516.14, intron 2 of 4) protein_coding-intron (ENSMUSG00000030516.14, intron 2 of 4) 11183 ENSMUSG00000108533.1 ENSMUSG00000108533 ENSMUST00000207008 Gm44792 TEC Interval_120964 chr4 151972501 151973146 + 0 NA intron (ENSMUSG00000039768.16, intron 2 of 5) protein_coding-intron (ENSMUSG00000039768.16, intron 7 of 15) -6161 ENSMUSG00000039768.16 ENSMUSG00000039768 ENSMUST00000124955 Dnajc11 protein_coding Interval_60785 chr15 76745118 76745691 + 0 NA intron (ENSMUSG00000033697.16, intron 3 of 10) protein_coding-intron (ENSMUSG00000033697.16, intron 3 of 11) -21559 ENSMUSG00000116138.1 ENSMUSG00000116138 ENSMUST00000229507 C030006K11Rik protein_coding Interval_142274 chr6 140336107 140338784 + 0 NA Intergenic Intergenic 17815 ENSMUSG00000065882.1 ENSMUSG00000065882 ENSMUST00000083948 n-R5s168 rRNA Interval_88698 chr2 9855174 9856885 + 0 NA Intergenic Intergenic 19370 ENSMUSG00000015619.10 ENSMUSG00000015619 ENSMUST00000142305 Gata3 protein_coding Interval_46818 chr13 71486545 71486743 + 0 NA promoter-TSS (ENSMUSG00000113358.1) lincRNA-promoter-TSS (ENSMUSG00000113358.1) -963 ENSMUSG00000113358.1 ENSMUSG00000113358 ENSMUST00000221719 1700112M02Rik lincRNA Interval_95830 chr2 117025764 117026231 + 0 NA Intergenic Intergenic -29569 ENSMUSG00000074930.5 ENSMUSG00000074930 ENSMUST00000122360 Gm13981 processed_pseudogene Interval_50094 chr14 7944167 7945642 + 0 NA intron (ENSMUSG00000025278.9, intron 43 of 45) protein_coding-intron (ENSMUSG00000025278.9, intron 43 of 45) -12384 ENSMUSG00000109649.1 ENSMUSG00000109649 ENSMUST00000211339 Gm45521 protein_coding Interval_30180 chr11 90229833 90230413 + 0 NA intron (ENSMUSG00000110344.1, intron 3 of 3) protein_coding-intron (ENSMUSG00000110344.1, intron 3 of 3) -19333 ENSMUSG00000003948.17 ENSMUSG00000003948 ENSMUST00000004050 Mmd protein_coding Interval_104144 chr3 59031112 59031329 + 0 NA intron (ENSMUSG00000056476.13, intron 1 of 43) protein_coding-intron (ENSMUSG00000056476.13, intron 1 of 14) 24733 ENSMUSG00000056476.13 ENSMUSG00000056476 ENSMUST00000197374 Med12l protein_coding Interval_149647 chr7 100371576 100372773 + 0 NA promoter-TSS (ENSMUSG00000047248.20) protein_coding-promoter-TSS (ENSMUSG00000047248.20) -240 ENSMUSG00000030718.9 ENSMUSG00000030718 ENSMUST00000208168 Ppme1 protein_coding Interval_163587 chr9 22353672 22355281 + 0 NA intron (ENSMUSG00000036777.8, intron 1 of 4) protein_coding-intron (ENSMUSG00000036777.8, intron 15 of 23) -3220 ENSMUSG00000036777.8 ENSMUSG00000036777 ENSMUST00000215486 Anln protein_coding Interval_28152 chr11 73267416 73268215 + 0 NA intron (ENSMUSG00000043029.2, intron 1 of 17) protein_coding-intron (ENSMUSG00000043029.2, intron 1 of 17) 427 ENSMUSG00000043029.2 ENSMUSG00000043029 ENSMUST00000049676 Trpv3 protein_coding Interval_104163 chr3 59312590 59313072 + 0 NA intron (ENSMUSG00000056476.13, intron 42 of 43) protein_coding-intron (ENSMUSG00000056476.13, intron 41 of 42) 31425 ENSMUSG00000036334.12 ENSMUSG00000036334 ENSMUST00000195983 Igsf10 protein_coding Interval_136011 chr6 49509806 49510420 + 0 NA Intergenic Intergenic 33614 ENSMUSG00000108266.1 ENSMUSG00000108266 ENSMUST00000204010 Gm5305 processed_pseudogene Interval_142513 chr6 142996919 142997288 + 0 NA Intergenic Intergenic 7493 ENSMUSG00000107839.1 ENSMUSG00000107839 ENSMUST00000203259 4930434O05Rik lincRNA Interval_135763 chr6 47120698 47121328 + 0 NA intron (ENSMUSG00000039419.17, intron 20 of 23) protein_coding-intron (ENSMUSG00000039419.17, intron 20 of 23) 75857 ENSMUSG00000107952.1 ENSMUSG00000107952 ENSMUST00000203583 Gm6352 processed_pseudogene Interval_146784 chr7 51163964 51164308 + 0 NA Intergenic Intergenic -6381 ENSMUSG00000108963.1 ENSMUSG00000108963 ENSMUST00000208113 Gm16478 processed_pseudogene Interval_95336 chr2 106720250 106720861 + 0 NA intron (ENSMUSG00000016386.15, intron 2 of 2) protein_coding-intron (ENSMUSG00000016386.15, intron 2 of 6) 25335 ENSMUSG00000016386.15 ENSMUSG00000016386 ENSMUST00000133401 Mpped2 protein_coding Interval_47033 chr13 74507690 74508627 + 0 NA Intergenic Intergenic 14015 ENSMUSG00000116646.1 ENSMUSG00000116646 ENSMUST00000231421 Gm49763 antisense Interval_118847 chr4 134035850 134036575 + 0 NA Intergenic Intergenic -17626 ENSMUSG00000049410.8 ENSMUSG00000049410 ENSMUST00000105884 Zfp683 protein_coding Interval_7557 chr1 132200503 132201561 + 0 NA promoter-TSS (ENSMUSG00000079330.9) protein_coding-promoter-TSS (ENSMUSG00000079330.9) 2944 ENSMUSG00000065435.1 ENSMUSG00000065435 ENSMUST00000083501 Mir135b miRNA Interval_166391 chr9 58858836 58860276 + 0 NA exon (ENSMUSG00000032338.9, exon 8 of 8) protein_coding-exon (ENSMUSG00000032338.9, exon 8 of 8) 36144 ENSMUSG00000032338.9 ENSMUSG00000032338 ENSMUST00000034889 Hcn4 protein_coding Interval_108305 chr3 123516507 123516955 + 0 NA Intergenic Intergenic -6057 ENSMUSG00000104670.1 ENSMUSG00000104670 ENSMUST00000196009 Gm9369 processed_pseudogene Interval_10165 chr1 166295227 166296008 + 0 NA intron (ENSMUSG00000040612.13, intron 5 of 8) protein_coding-intron (ENSMUSG00000040612.13, intron 5 of 9) 13968 ENSMUSG00000091393.1 ENSMUSG00000091393 ENSMUST00000168347 5330438I03Rik antisense Interval_64040 chr16 6018504 6019902 + 0 NA intron (ENSMUSG00000008658.16, intron 1 of 11) protein_coding-intron (ENSMUSG00000008658.16, intron 1 of 11) 43618 ENSMUSG00000101481.1 ENSMUSG00000101481 ENSMUST00000190515 1700123O21Rik sense_intronic Interval_54712 chr14 73509521 73510615 + 0 NA promoter-TSS (ENSMUSG00000022109.6) protein_coding-promoter-TSS (ENSMUSG00000022109.6) 30 ENSMUSG00000022109.6 ENSMUSG00000022109 ENSMUST00000228141 Med4 protein_coding Interval_44880 chr13 49326632 49327486 + 0 NA Intergenic Intergenic -17819 ENSMUSG00000037946.11 ENSMUSG00000037946 ENSMUST00000110086 Fgd3 protein_coding Interval_52626 chr14 48114417 48114889 + 0 NA Intergenic Intergenic 15510 ENSMUSG00000115790.1 ENSMUSG00000115790 ENSMUST00000228011 9530086P17Rik TEC Interval_48341 chr13 98308914 98309305 + 0 NA TTS (ENSMUSG00000021660.14) protein_coding-TTS (ENSMUSG00000021660.14) 6605 ENSMUSG00000096330.8 ENSMUSG00000096330 ENSMUST00000186911 Gm21976 protein_coding Interval_14495 chr10 34347560 34348393 + 0 NA intron (ENSMUSG00000039480.14, intron 5 of 10) protein_coding-intron (ENSMUSG00000039480.14, intron 6 of 11) -42005 ENSMUSG00000039462.4 ENSMUSG00000039462 ENSMUST00000105511 Col10a1 protein_coding Interval_36288 chr12 40749856 40750105 + 0 NA intron (ENSMUSG00000035954.10, intron 25 of 31) protein_coding-intron (ENSMUSG00000035954.10, intron 25 of 52) -125557 ENSMUSG00000113435.1 ENSMUSG00000113435 ENSMUST00000221545 Gm19441 processed_pseudogene Interval_54856 chr14 75855347 75856529 + 0 NA Intergenic Intergenic 8033 ENSMUSG00000065147.1 ENSMUSG00000065147 ENSMUST00000083213 Snora31 snoRNA Interval_143123 chr6 149523523 149523865 + 0 NA intron (ENSMUSG00000003452.15, intron 8 of 9) protein_coding-intron (ENSMUSG00000003452.15, intron 8 of 9) -42438 ENSMUSG00000096299.3 ENSMUSG00000096299 ENSMUST00000144085 Gm21814 lincRNA Interval_156234 chr8 46305723 46307837 + 0 NA exon (ENSMUSG00000110179.1, exon 3 of 5) lincRNA-exon (ENSMUSG00000110179.1, exon 3 of 5) -7021 ENSMUSG00000109743.1 ENSMUSG00000109743 ENSMUST00000209943 Gm45255 TEC Interval_161058 chr8 117220788 117221238 + 0 NA Intergenic Intergenic 62876 ENSMUSG00000052557.11 ENSMUSG00000052557 ENSMUST00000162997 Gan protein_coding Interval_145508 chr7 35293526 35294296 + 0 NA intron (ENSMUSG00000063808.14, intron 11 of 20) protein_coding-intron (ENSMUSG00000063808.14, intron 11 of 19) -8592 ENSMUSG00000063808.14 ENSMUSG00000063808 ENSMUST00000153778 Gpatch1 protein_coding Interval_30524 chr11 94936902 94937890 + 0 NA promoter-TSS (ENSMUSG00000001506.10) protein_coding-promoter-TSS (ENSMUSG00000001506.10) -1616 ENSMUSG00000001506.10 ENSMUSG00000001506 ENSMUST00000148046 Col1a1 protein_coding Interval_141411 chr6 128090912 128092058 + 0 NA intron (ENSMUSG00000030352.15, intron 1 of 6) protein_coding-intron (ENSMUSG00000030352.15, intron 1 of 8) 3541 ENSMUSG00000076327.1 ENSMUSG00000076327 ENSMUST00000102372 Gm26338 miRNA Interval_107626 chr3 108975057 108975484 + 0 NA exon (ENSMUSG00000040339.10, exon 11 of 11) protein_coding-exon (ENSMUSG00000040339.10, exon 11 of 11) -24754 ENSMUSG00000106108.1 ENSMUSG00000106108 ENSMUST00000197612 Gm43221 antisense Interval_90026 chr2 27390455 27390669 + 0 NA intron (ENSMUSG00000009621.18, intron 1 of 27) protein_coding-intron (ENSMUSG00000009621.18, intron 1 of 27) -11290 ENSMUSG00000076364.1 ENSMUSG00000076364 ENSMUST00000102409 Gm24049 miRNA Interval_52570 chr14 47572063 47573525 + 0 NA Intergenic Intergenic 3268 ENSMUSG00000115571.1 ENSMUSG00000115571 ENSMUST00000228790 Gm6616 processed_pseudogene Interval_163563 chr9 22203720 22204562 + 0 NA promoter-TSS (ENSMUSG00000110757.1) unprocessed_pseudogene-promoter-TSS (ENSMUSG00000110757.1) -352 ENSMUSG00000110757.1 ENSMUSG00000110757 ENSMUST00000217297 Gm18228 unprocessed_pseudogene Interval_148534 chr7 82243282 82244145 + 0 NA intron (ENSMUSG00000030638.13, intron 1 of 5) protein_coding-intron (ENSMUSG00000030638.13, intron 1 of 8) 68557 ENSMUSG00000030638.13 ENSMUSG00000030638 ENSMUST00000178526 Sh3gl3 protein_coding Interval_147414 chr7 66651987 66652622 + 0 NA intron (ENSMUSG00000030509.17, intron 5 of 5) protein_coding-intron (ENSMUSG00000030509.17, intron 5 of 5) -33156 ENSMUSG00000109249.1 ENSMUSG00000109249 ENSMUST00000209012 Gm44610 TEC Interval_99814 chr2 165080435 165081106 + 0 NA intron (ENSMUSG00000078935.1, intron 2 of 2) protein_coding-intron (ENSMUSG00000078935.1, intron 2 of 2) 9980 ENSMUSG00000078935.1 ENSMUSG00000078935 ENSMUST00000109304 1700025C18Rik protein_coding Interval_94981 chr2 102470882 102471099 + 0 NA Intergenic Intergenic -18491 ENSMUSG00000075012.4 ENSMUSG00000075012 ENSMUST00000099678 Fjx1 protein_coding Interval_173762 chrX 103611446 103612216 + 0 NA intron (ENSMUSG00000086370.9, intron 2 of 10) lincRNA-intron (ENSMUSG00000086370.9, intron 3 of 4) 5508 ENSMUSG00000098825.1 ENSMUSG00000098825 ENSMUST00000183875 Gm27285 misc_RNA Interval_81275 chr18 57317991 57318688 + 0 NA Intergenic Intergenic 1942 ENSMUSG00000118343.1 ENSMUSG00000118343 ENSMUST00000235655 Gm50201 lincRNA Interval_155848 chr8 40187138 40187774 + 0 NA Intergenic Intergenic 120473 ENSMUSG00000098431.1 ENSMUSG00000098431 ENSMUST00000183849 Mir7666 miRNA Interval_143986 chr7 18781085 18782422 + 0 NA Intergenic Intergenic -4579 ENSMUSG00000109116.1 ENSMUSG00000109116 ENSMUST00000207882 Sycp1-ps1 processed_pseudogene Interval_160375 chr8 108810381 108810735 + 0 NA intron (ENSMUSG00000038872.10, intron 9 of 15) protein_coding-intron (ENSMUSG00000038872.10, intron 3 of 9) -57004 ENSMUSG00000102989.1 ENSMUSG00000102989 ENSMUST00000195769 Gm38318 TEC Interval_127526 chr5 104833790 104835146 + 0 NA intron (ENSMUSG00000072774.10, intron 1 of 4) protein_coding-intron (ENSMUSG00000072774.10, intron 1 of 4) 25325 ENSMUSG00000072774.10 ENSMUSG00000072774 ENSMUST00000191135 Zfp951 protein_coding Interval_55956 chr14 103162787 103163077 + 0 NA intron (ENSMUSG00000033004.16, intron 55 of 82) protein_coding-intron (ENSMUSG00000033004.16, intron 57 of 84) -63426 ENSMUSG00000022124.15 ENSMUSG00000022124 ENSMUST00000123043 Fbxl3 protein_coding Interval_43931 chr13 38129231 38130684 + 0 NA Intergenic Intergenic 21835 ENSMUSG00000103789.1 ENSMUSG00000103789 ENSMUST00000191991 Gm10129 TEC Interval_127262 chr5 101961174 101961526 + 0 NA intron (ENSMUSG00000043940.15, intron 2 of 64) protein_coding-intron (ENSMUSG00000043940.15, intron 5 of 66) 4743 ENSMUSG00000106451.1 ENSMUSG00000106451 ENSMUST00000196920 Gm42934 TEC Interval_161987 chr8 124272475 124274394 + 0 NA intron (ENSMUSG00000089704.9, intron 1 of 4) protein_coding-intron (ENSMUSG00000089704.9, intron 1 of 15) -21932 ENSMUSG00000089704.9 ENSMUSG00000089704 ENSMUST00000147911 Galnt2 protein_coding Interval_49866 chr13 117333736 117334318 + 0 NA Intergenic Intergenic 24593 ENSMUSG00000114540.1 ENSMUSG00000114540 ENSMUST00000225588 Gm6421 processed_pseudogene Interval_25534 chr11 49625633 49626685 + 0 NA intron (ENSMUSG00000020357.3, intron 5 of 6) protein_coding-intron (ENSMUSG00000020357.3, intron 5 of 29) 16896 ENSMUSG00000020357.3 ENSMUSG00000020357 ENSMUST00000020617 Flt4 protein_coding Interval_113881 chr4 59542995 59543329 + 0 NA intron (ENSMUSG00000028382.15, intron 1 of 12) protein_coding-intron (ENSMUSG00000028382.15, intron 1 of 13) -5992 ENSMUSG00000046145.7 ENSMUSG00000046145 ENSMUST00000052502 1700018M17Rik pseudogene Interval_4911 chr1 82382110 82382327 + 0 NA intron (ENSMUSG00000026142.15, intron 6 of 6) protein_coding-intron (ENSMUSG00000026142.15, intron 6 of 6) 14599 ENSMUSG00000096779.1 ENSMUSG00000096779 ENSMUST00000117032 Gm22112 miRNA Interval_116001 chr4 106898961 106899596 + 0 NA Intergenic Intergenic -51358 ENSMUSG00000086940.1 ENSMUSG00000086940 ENSMUST00000151369 Gm12746 lincRNA Interval_152020 chr7 128316987 128317716 + 0 NA intron (ENSMUSG00000108608.1, intron 1 of 1) transcribed_processed_pseudogene-intron (ENSMUSG00000108608.1, intron 1 of 1) -12457 ENSMUSG00000108636.1 ENSMUSG00000108636 ENSMUST00000206929 Gm44650 unprocessed_pseudogene Interval_127646 chr5 106072750 106073295 + 0 NA promoter-TSS (ENSMUSG00000095052.1) snRNA-promoter-TSS (ENSMUSG00000095052.1) -589 ENSMUSG00000095052.1 ENSMUSG00000095052 ENSMUST00000180111 Gm25672 snRNA Interval_166787 chr9 62707245 62707867 + 0 NA intron (ENSMUSG00000032243.8, intron 2 of 27) protein_coding-intron (ENSMUSG00000032243.8, intron 2 of 29) 29696 ENSMUSG00000032243.8 ENSMUSG00000032243 ENSMUST00000159012 Itga11 protein_coding Interval_8915 chr1 152110944 152112493 + 0 NA Intergenic Intergenic -16867 ENSMUSG00000102090.1 ENSMUSG00000102090 ENSMUST00000165944 Gm8964 processed_pseudogene Interval_153103 chr7 141371978 141374655 + 0 NA Intergenic Intergenic -8234 ENSMUSG00000086844.1 ENSMUSG00000086844 ENSMUST00000129373 B230206H07Rik processed_transcript Interval_143341 chr7 5913794 5913978 + 0 NA Intergenic Intergenic 8867 ENSMUSG00000092393.2 ENSMUSG00000092393 ENSMUST00000174652 Gm20399 processed_pseudogene Interval_152982 chr7 140253548 140253792 + 0 NA exon (ENSMUSG00000054672.13, exon 4 of 13) protein_coding-exon (ENSMUSG00000054672.13, exon 4 of 13) 35403 ENSMUSG00000025461.11 ENSMUSG00000025461 ENSMUST00000209840 Cd163l1 protein_coding Interval_172484 chrX 21061382 21063284 + 0 NA promoter-TSS (ENSMUSG00000054737.11) protein_coding-promoter-TSS (ENSMUSG00000054737.11) -290 ENSMUSG00000054737.11 ENSMUSG00000054737 ENSMUST00000138123 Zfp182 protein_coding Interval_33317 chr11 115891579 115892720 + 0 NA TTS (ENSMUSG00000020752.11) protein_coding-TTS (ENSMUSG00000020752.11) -7817 ENSMUSG00000048442.15 ENSMUSG00000048442 ENSMUST00000131566 Smim5 protein_coding Interval_121482 chr4 156077337 156078548 + 0 NA Intergenic Intergenic -18140 ENSMUSG00000086549.1 ENSMUSG00000086549 ENSMUST00000138361 Gm13648 processed_transcript Interval_165779 chr9 52760354 52760676 + 0 NA intron (ENSMUSG00000111020.1, intron 2 of 4) lincRNA-intron (ENSMUSG00000111020.1, intron 2 of 4) -3496 ENSMUSG00000110833.1 ENSMUSG00000110833 ENSMUST00000216112 Gm47981 processed_pseudogene Interval_158641 chr8 84923583 84923913 + 0 NA TTS (ENSMUSG00000053693.16) protein_coding-TTS (ENSMUSG00000053693.16) 366 ENSMUSG00000053693.16 ENSMUSG00000053693 ENSMUST00000128356 Mast1 protein_coding Interval_132529 chr5 145779596 145780780 + 0 NA intron (ENSMUSG00000054417.5, intron 10 of 12) protein_coding-intron (ENSMUSG00000054417.5, intron 10 of 12) 19643 ENSMUSG00000105661.1 ENSMUSG00000105661 ENSMUST00000198575 Gm43626 processed_pseudogene Interval_151968 chr7 127866112 127868374 + 0 NA TTS (ENSMUSG00000049728.14) protein_coding-TTS (ENSMUSG00000049728.14) 8891 ENSMUSG00000049728.14 ENSMUSG00000049728 ENSMUST00000150961 Zfp668 protein_coding Interval_98919 chr2 156023034 156023371 + 0 NA exon (ENSMUSG00000013338.16, exon 39 of 45) protein_coding-exon (ENSMUSG00000013338.16, exon 39 of 45) 12755 ENSMUSG00000005881.13 ENSMUSG00000005881 ENSMUST00000149381 Ergic3 protein_coding Interval_10281 chr1 167929418 167930445 + 0 NA Intergenic Intergenic -74208 ENSMUSG00000093538.2 ENSMUSG00000093538 ENSMUST00000177351 Gm20711 antisense Interval_22702 chr11 13417557 13418738 + 0 NA Intergenic Intergenic 420481 ENSMUSG00000084055.1 ENSMUSG00000084055 ENSMUST00000117869 Gm12004 processed_pseudogene Interval_120075 chr4 141668237 141668480 + 0 NA Intergenic Intergenic 17241 ENSMUSG00000040715.12 ENSMUSG00000040715 ENSMUST00000105782 Rsc1a1 protein_coding Interval_40408 chr12 104692434 104692818 + 0 NA intron (ENSMUSG00000041415.10, intron 18 of 20) protein_coding-intron (ENSMUSG00000041415.10, intron 24 of 26) 29426 ENSMUSG00000041415.10 ENSMUSG00000041415 ENSMUST00000222002 Dicer1 protein_coding Interval_75311 chr17 65819196 65819437 + 0 NA promoter-TSS (ENSMUSG00000061950.17) protein_coding-promoter-TSS (ENSMUSG00000061950.17) -9632 ENSMUSG00000061950.17 ENSMUSG00000061950 ENSMUST00000162703 Ppp4r1 protein_coding Interval_155996 chr8 41663204 41663798 + 0 NA Intergenic Intergenic -4832 ENSMUSG00000094568.1 ENSMUSG00000094568 ENSMUST00000180067 Smarce1-ps1 processed_pseudogene Interval_84791 chr19 16755343 16755594 + 0 NA intron (ENSMUSG00000046230.11, intron 5 of 5) protein_coding-intron (ENSMUSG00000046230.11, intron 5 of 71) -25079 ENSMUSG00000046388.4 ENSMUSG00000046388 ENSMUST00000051080 Gm9806 pseudogene Interval_56310 chr14 117017283 117017528 + 0 NA intron (ENSMUSG00000058571.11, intron 1 of 9) protein_coding-intron (ENSMUSG00000058571.11, intron 1 of 8) 91874 ENSMUSG00000058571.11 ENSMUSG00000058571 ENSMUST00000078849 Gpc6 protein_coding Interval_16687 chr10 67036168 67036532 + 0 NA exon (ENSMUSG00000019873.8, exon 1 of 1) protein_coding-exon (ENSMUSG00000019873.8, exon 1 of 1) 972 ENSMUSG00000019873.8 ENSMUSG00000019873 ENSMUST00000219431 Reep3 protein_coding Interval_97147 chr2 131755181 131755791 + 0 NA Intergenic Intergenic -33648 ENSMUSG00000086831.1 ENSMUSG00000086831 ENSMUST00000138080 Gm14280 antisense Interval_98340 chr2 151605665 151606358 + 0 NA intron (ENSMUSG00000027457.15, intron 2 of 4) protein_coding-intron (ENSMUSG00000027457.15, intron 2 of 5) 26550 ENSMUSG00000027457.15 ENSMUSG00000027457 ENSMUST00000133378 Snph protein_coding Interval_29395 chr11 83675043 83675240 + 0 NA Intergenic Intergenic -2377 ENSMUSG00000083664.1 ENSMUSG00000083664 ENSMUST00000118318 Gm11433 unprocessed_pseudogene Interval_56767 chr14 121937215 121938030 + 0 NA intron (ENSMUSG00000041765.6, intron 1 of 3) protein_coding-intron (ENSMUSG00000041765.6, intron 4 of 8) -8692 ENSMUSG00000041765.6 ENSMUSG00000041765 ENSMUST00000227936 Ubac2 protein_coding Interval_160430 chr8 109446580 109447597 + 0 NA Intergenic Intergenic -21344 ENSMUSG00000092821.1 ENSMUSG00000092821 ENSMUST00000175080 Gm23163 miRNA Interval_11740 chr1 185061738 185062515 + 0 NA Intergenic Intergenic 23838 ENSMUSG00000103942.1 ENSMUSG00000103942 ENSMUST00000195441 Gm34732 lincRNA Interval_81861 chr18 65430282 65431666 + 0 NA promoter-TSS (ENSMUSG00000032688.9) protein_coding-promoter-TSS (ENSMUSG00000032688.9) -37 ENSMUSG00000032688.9 ENSMUSG00000032688 ENSMUST00000235999 Malt1 protein_coding Interval_62038 chr15 86038898 86039343 + 0 NA Intergenic Intergenic -35613 ENSMUSG00000035900.18 ENSMUSG00000035900 ENSMUST00000147286 Gramd4 protein_coding Interval_152709 chr7 136670531 136671108 + 0 NA intron (ENSMUSG00000110101.1, intron 5 of 5) lincRNA-intron (ENSMUSG00000110101.1, intron 5 of 5) 13610 ENSMUSG00000109894.1 ENSMUSG00000109894 ENSMUST00000210286 Gm5904 processed_pseudogene Interval_67101 chr16 42985245 42985431 + 0 NA intron (ENSMUSG00000022708.16, intron 2 of 7) protein_coding-intron (ENSMUSG00000022708.16, intron 1 of 14) 29707 ENSMUSG00000081824.5 ENSMUSG00000081824 ENSMUST00000121906 Ndufs5-ps processed_pseudogene Interval_145828 chr7 39705325 39705827 + 0 NA Intergenic Intergenic 34953 ENSMUSG00000101901.1 ENSMUSG00000101901 ENSMUST00000188228 Gm9230 processed_pseudogene Interval_94313 chr2 88268570 88269504 + 0 NA Intergenic Intergenic -4673 ENSMUSG00000082237.2 ENSMUSG00000082237 ENSMUST00000121530 Olfr1172-ps1 unprocessed_pseudogene Interval_90250 chr2 29321576 29321833 + 0 NA Intergenic Intergenic -68711 ENSMUSG00000079499.9 ENSMUSG00000079499 ENSMUST00000028141 6530402F18Rik processed_transcript Interval_66694 chr16 36230597 36230880 + 0 NA intron (ENSMUSG00000095620.7, intron 1 of 3) protein_coding-intron (ENSMUSG00000095620.7, intron 1 of 4) 4959 ENSMUSG00000075228.1 ENSMUSG00000075228 ENSMUST00000099936 Gm10813 pseudogene Interval_45441 chr13 55181954 55183235 + 0 NA Intergenic Intergenic 26911 ENSMUSG00000005320.9 ENSMUSG00000005320 ENSMUST00000162167 Fgfr4 protein_coding Interval_35972 chr12 33008397 33010299 + 0 NA Intergenic Intergenic -9338 ENSMUSG00000089136.1 ENSMUSG00000089136 ENSMUST00000158511 Gm24922 snRNA Interval_16365 chr10 62501831 62502587 + 0 NA intron (ENSMUSG00000020077.14, intron 2 of 3) protein_coding-intron (ENSMUSG00000020077.14, intron 1 of 2) -15477 ENSMUSG00000020078.16 ENSMUSG00000020078 ENSMUST00000217868 Vps26a protein_coding Interval_135103 chr6 35369835 35371233 + 0 NA Intergenic Intergenic 39688 ENSMUSG00000107341.1 ENSMUSG00000107341 ENSMUST00000201560 1700065J11Rik lincRNA Interval_151159 chr7 118902727 118903226 + 0 NA intron (ENSMUSG00000073856.11, intron 5 of 7) protein_coding-intron (ENSMUSG00000073856.11, intron 6 of 8) 47224 ENSMUSG00000073856.11 ENSMUSG00000073856 ENSMUST00000132148 Iqck protein_coding Interval_125934 chr5 75941276 75942583 + 0 NA exon (ENSMUSG00000062960.10, exon 27 of 30) protein_coding-exon (ENSMUSG00000062960.10, exon 27 of 30) 32102 ENSMUSG00000088783.1 ENSMUSG00000088783 ENSMUST00000158158 Gm25374 miRNA Interval_91236 chr2 36221526 36223211 + 0 NA intron (ENSMUSG00000087187.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000087187.1, intron 3 of 3) 5591 ENSMUSG00000087187.1 ENSMUSG00000087187 ENSMUST00000129699 Gm13431 lincRNA Interval_90516 chr2 30901038 30903386 + 0 NA promoter-TSS (ENSMUSG00000050737.13) protein_coding-promoter-TSS (ENSMUSG00000050737.13) 22145 ENSMUSG00000084143.1 ENSMUSG00000084143 ENSMUST00000117436 Gm13400 processed_pseudogene Interval_32416 chr11 107426091 107426793 + 0 NA intron (ENSMUSG00000040430.18, intron 1 of 9) protein_coding-intron (ENSMUSG00000040430.18, intron 1 of 9) -1834 ENSMUSG00000087113.1 ENSMUSG00000087113 ENSMUST00000136927 Gm11714 processed_transcript Interval_49291 chr13 110343688 110343921 + 0 NA Intergenic Intergenic 13395 ENSMUSG00000046006.6 ENSMUSG00000046006 ENSMUST00000224534 Gapt protein_coding Interval_162783 chr9 9074170 9074360 + 0 NA intron (ENSMUSG00000050730.17, intron 4 of 15) protein_coding-intron (ENSMUSG00000050730.17, intron 4 of 22) 102474 ENSMUSG00000078117.2 ENSMUSG00000078117 ENSMUST00000104915 Gm16485 TEC Interval_34951 chr12 15060931 15061571 + 0 NA intron (ENSMUSG00000113285.1, intron 1 of 10) transcribed_processed_pseudogene-intron (ENSMUSG00000113285.1, intron 1 of 6) -6866 ENSMUSG00000113285.1 ENSMUSG00000113285 ENSMUST00000222816 Gm36128 transcribed_processed_pseudogene Interval_21390 chr10 128321797 128323355 + 0 NA promoter-TSS (ENSMUSG00000025381.3) protein_coding-promoter-TSS (ENSMUSG00000025381.3) 62 ENSMUSG00000025381.3 ENSMUSG00000025381 ENSMUST00000219199 Cnpy2 protein_coding Interval_89906 chr2 26373990 26374191 + 0 NA promoter-TSS (ENSMUSG00000036281.13) protein_coding-promoter-TSS (ENSMUSG00000036281.13) 6536 ENSMUSG00000036281.13 ENSMUSG00000036281 ENSMUST00000155643 Snapc4 protein_coding Interval_161526 chr8 120971534 120972446 + 0 NA intron (ENSMUSG00000092329.1, intron 1 of 15) protein_coding-intron (ENSMUSG00000092329.1, intron 1 of 15) -30937 ENSMUSG00000101886.1 ENSMUSG00000101886 ENSMUST00000187913 Gm28324 lincRNA Interval_106659 chr3 98223953 98224672 + 0 NA intron (ENSMUSG00000027876.4, intron 1 of 5) protein_coding-intron (ENSMUSG00000027876.4, intron 1 of 5) 2156 ENSMUSG00000027876.4 ENSMUSG00000027876 ENSMUST00000029469 Reg4 protein_coding Interval_141355 chr6 127582605 127583392 + 0 NA intron (ENSMUSG00000061414.8, intron 2 of 18) protein_coding-intron (ENSMUSG00000061414.8, intron 1 of 6) 21660 ENSMUSG00000061414.8 ENSMUSG00000061414 ENSMUST00000071563 Cracr2a protein_coding Interval_152946 chr7 139971920 139972297 + 0 NA TTS (ENSMUSG00000073795.11) protein_coding-TTS (ENSMUSG00000073795.11) 6611 ENSMUSG00000073795.11 ENSMUSG00000073795 ENSMUST00000121412 Spef1l protein_coding Interval_2949 chr1 51508352 51510132 + 0 NA TTS (ENSMUSG00000099413.1) lincRNA-TTS (ENSMUSG00000099413.1) 3087 ENSMUSG00000099413.1 ENSMUSG00000099413 ENSMUST00000189410 Gm17767 lincRNA Interval_63179 chr15 99583614 99585502 + 0 NA TTS (ENSMUSG00000023013.5) protein_coding-TTS (ENSMUSG00000023013.5) 5503 ENSMUSG00000023013.5 ENSMUSG00000023013 ENSMUST00000023752 Aqp2 protein_coding Interval_87162 chr19 46528593 46530637 + 0 NA Intergenic Intergenic 14955 ENSMUSG00000025034.9 ENSMUSG00000025034 ENSMUST00000235934 Trim8 protein_coding Interval_52860 chr14 51172334 51173115 + 0 NA Intergenic Intergenic -4299 ENSMUSG00000115136.1 ENSMUSG00000115136 ENSMUST00000228894 Ear-ps1 unprocessed_pseudogene Interval_135086 chr6 35268482 35270407 + 0 NA intron (ENSMUSG00000029843.4, intron 15 of 15) protein_coding-intron (ENSMUSG00000029843.4, intron 15 of 15) 16790 ENSMUSG00000073155.12 ENSMUSG00000073155 ENSMUST00000136110 1810058I24Rik protein_coding Interval_87842 chr19 56419338 56420005 + 0 NA intron (ENSMUSG00000025076.11, intron 2 of 6) protein_coding-intron (ENSMUSG00000025076.11, intron 2 of 6) -6014 ENSMUSG00000025076.11 ENSMUSG00000025076 ENSMUST00000237765 Casp7 protein_coding Interval_147080 chr7 62209286 62209863 + 0 NA promoter-TSS (ENSMUSG00000045813.7) lincRNA-promoter-TSS (ENSMUSG00000045813.7) -95 ENSMUSG00000045813.7 ENSMUSG00000045813 ENSMUST00000054860 Gm9801 lincRNA Interval_66590 chr16 35453301 35454047 + 0 NA intron (ENSMUSG00000022844.8, intron 8 of 8) protein_coding-intron (ENSMUSG00000022844.8, intron 5 of 16) -13311 ENSMUSG00000095160.1 ENSMUSG00000095160 ENSMUST00000178681 Gm25548 miRNA Interval_61568 chr15 82453846 82454170 + 0 NA promoter-TSS (ENSMUSG00000068086.6) protein_coding-promoter-TSS (ENSMUSG00000068086.6) 1587 ENSMUSG00000099086.1 ENSMUSG00000099086 ENSMUST00000183779 Gm27622 miRNA Interval_89521 chr2 21624770 21625718 + 0 NA intron (ENSMUSG00000045967.11, intron 4 of 7) protein_coding-intron (ENSMUSG00000045967.11, intron 4 of 10) 169811 ENSMUSG00000077572.1 ENSMUSG00000077572 ENSMUST00000104384 Gm24886 snoRNA Interval_98507 chr2 152861683 152861989 + 0 NA intron (ENSMUSG00000027469.16, intron 2 of 17) protein_coding-intron (ENSMUSG00000027469.16, intron 2 of 17) -3231 ENSMUSG00000093746.1 ENSMUSG00000093746 ENSMUST00000175928 Mir5622 miRNA Interval_82755 chr18 76822827 76823066 + 0 NA Intergenic Intergenic -33459 ENSMUSG00000091519.1 ENSMUSG00000091519 ENSMUST00000166956 Skor2 protein_coding Interval_116683 chr4 116642101 116642383 + 0 NA intron (ENSMUSG00000028692.14, intron 2 of 5) protein_coding-intron (ENSMUSG00000028692.14, intron 2 of 8) 7232 ENSMUSG00000028692.14 ENSMUSG00000028692 ENSMUST00000128059 Akr1a1 protein_coding Interval_68322 chr16 73095867 73097448 + 0 NA TTS (ENSMUSG00000116976.1) processed_transcript-TTS (ENSMUSG00000116976.1) 24282 ENSMUSG00000116976.1 ENSMUSG00000116976 ENSMUST00000231486 4930500H12Rik processed_transcript Interval_19956 chr10 111498046 111498332 + 0 NA TTS (ENSMUSG00000058799.16) protein_coding-TTS (ENSMUSG00000058799.16) -2595 ENSMUSG00000111997.1 ENSMUSG00000111997 ENSMUST00000220267 Gm5176 transcribed_processed_pseudogene Interval_171788 chr9 121140895 121141293 + 0 NA intron (ENSMUSG00000040936.15, intron 30 of 36) protein_coding-intron (ENSMUSG00000040936.15, intron 30 of 33) -101248 ENSMUSG00000084706.1 ENSMUSG00000084706 ENSMUST00000122757 Gm22987 misc_RNA Interval_106420 chr3 96091289 96092201 + 0 NA Intergenic Intergenic 4874 ENSMUSG00000105995.1 ENSMUSG00000105995 ENSMUST00000199987 Gm43554 processed_pseudogene Interval_128195 chr5 111633329 111633896 + 0 NA Intergenic Intergenic 39996 ENSMUSG00000104833.1 ENSMUSG00000104833 ENSMUST00000198964 Gm42489 lincRNA Interval_57710 chr15 16393460 16394219 + 0 NA Intergenic Intergenic 102973 ENSMUSG00000115614.1 ENSMUSG00000115614 ENSMUST00000227529 Gm41276 lincRNA Interval_60201 chr15 67835030 67835629 + 0 NA Intergenic Intergenic -38499 ENSMUSG00000115875.1 ENSMUSG00000115875 ENSMUST00000230402 Gm49408 processed_pseudogene Interval_77586 chr17 92473657 92474038 + 0 NA Intergenic Intergenic 54663 ENSMUSG00000098122.1 ENSMUSG00000098122 ENSMUST00000182438 Gm27039 processed_pseudogene Interval_42445 chr13 13612752 13613577 + 0 NA intron (ENSMUSG00000019726.12, intron 1 of 4) protein_coding-intron (ENSMUSG00000019726.12, intron 1 of 52) -70927 ENSMUSG00000019726.12 ENSMUSG00000019726 ENSMUST00000221587 Lyst protein_coding Interval_106710 chr3 99261404 99262334 + 0 NA promoter-TSS (ENSMUSG00000105689.1) antisense-promoter-TSS (ENSMUSG00000105689.1) -584 ENSMUSG00000105689.1 ENSMUSG00000105689 ENSMUST00000196228 Gm43120 antisense Interval_157961 chr8 77339871 77340569 + 0 NA intron (ENSMUSG00000037148.8, intron 18 of 21) protein_coding-intron (ENSMUSG00000037148.8, intron 18 of 22) 8250 ENSMUSG00000109732.1 ENSMUSG00000109732 ENSMUST00000210418 Gm45285 antisense Interval_1403 chr1 21379581 21380013 + 0 NA TTS (ENSMUSG00000094926.1) processed_pseudogene-TTS (ENSMUSG00000094926.1) 242 ENSMUSG00000094926.1 ENSMUSG00000094926 ENSMUST00000140035 Gm16533 processed_pseudogene Interval_38686 chr12 81024980 81025234 + 0 NA Intergenic Intergenic -1721 ENSMUSG00000021136.13 ENSMUSG00000021136 ENSMUST00000129362 Smoc1 protein_coding Interval_101687 chr3 8951649 8952306 + 0 NA intron (ENSMUSG00000027506.15, intron 3 of 3) protein_coding-intron (ENSMUSG00000027506.15, intron 2 of 6) -28059 ENSMUSG00000040269.5 ENSMUSG00000040269 ENSMUST00000042148 Mrps28 protein_coding Interval_25173 chr11 44761151 44762120 + 0 NA intron (ENSMUSG00000057098.14, intron 6 of 15) protein_coding-intron (ENSMUSG00000057098.14, intron 6 of 15) -98959 ENSMUSG00000085784.1 ENSMUSG00000085784 ENSMUST00000130493 Gm12158 antisense Interval_142770 chr6 145482281 145483335 + 0 NA intron (ENSMUSG00000054966.13, intron 2 of 10) protein_coding-intron (ENSMUSG00000054966.13, intron 2 of 10) 18619 ENSMUSG00000088781.1 ENSMUSG00000088781 ENSMUST00000158156 Gm25373 snoRNA Interval_173842 chrX 105911016 105911295 + 0 NA intron (ENSMUSG00000031229.16, intron 2 of 10) protein_coding-intron (ENSMUSG00000031229.16, intron 1 of 5) -35850 ENSMUSG00000031229.16 ENSMUSG00000031229 ENSMUST00000126345 Atrx protein_coding Interval_15543 chr10 51132888 51133612 + 0 NA Intergenic Intergenic -49049 ENSMUSG00000084449.1 ENSMUSG00000084449 ENSMUST00000122500 Gm26257 snRNA Interval_5855 chr1 92647700 92649137 + 0 NA promoter-TSS (ENSMUSG00000044055.5) protein_coding-promoter-TSS (ENSMUSG00000044055.5) -164 ENSMUSG00000044055.5 ENSMUSG00000044055 ENSMUST00000159803 Otos protein_coding Interval_144798 chr7 28329265 28329983 + 0 NA promoter-TSS (ENSMUSG00000003435.9) protein_coding-promoter-TSS (ENSMUSG00000003435.9) 9082 ENSMUSG00000003435.9 ENSMUSG00000003435 ENSMUST00000208726 Supt5 protein_coding Interval_2106 chr1 36467636 36467844 + 0 NA Intergenic Intergenic -4256 ENSMUSG00000037408.10 ENSMUSG00000037408 ENSMUST00000192530 Cnnm4 protein_coding Interval_79459 chr18 32059801 32060473 + 0 NA Intergenic Intergenic -23129 ENSMUSG00000024384.4 ENSMUSG00000024384 ENSMUST00000212458 Iws1 protein_coding Interval_88621 chr2 6912428 6912909 + 0 NA intron (ENSMUSG00000002107.18, intron 2 of 13) protein_coding-intron (ENSMUSG00000002107.18, intron 3 of 15) 22413 ENSMUSG00000075538.2 ENSMUSG00000075538 ENSMUST00000100426 Gm10855 sense_intronic Interval_94093 chr2 83806935 83807571 + 0 NA TTS (ENSMUSG00000027087.11) protein_coding-TTS (ENSMUSG00000027087.11) -47388 ENSMUSG00000085335.1 ENSMUSG00000085335 ENSMUST00000152569 Gm13684 processed_transcript Interval_10644 chr1 172410796 172411162 + 0 NA Intergenic Intergenic -19990 ENSMUSG00000102278.1 ENSMUSG00000102278 ENSMUST00000193540 Gm37145 TEC Interval_77953 chr18 6069012 6069226 + 0 NA exon (ENSMUSG00000041225.16, exon 1 of 1) protein_coding-exon (ENSMUSG00000041225.16, exon 1 of 1) 42861 ENSMUSG00000041225.16 ENSMUSG00000041225 ENSMUST00000182572 Arhgap12 protein_coding Interval_87510 chr19 53141922 53143359 + 0 NA promoter-TSS (ENSMUSG00000025026.15) protein_coding-promoter-TSS (ENSMUSG00000025026.15) 2123 ENSMUSG00000025026.15 ENSMUSG00000025026 ENSMUST00000237153 Add3 protein_coding Interval_172542 chrX 36327971 36330683 + 0 NA exon (ENSMUSG00000016239.11, exon 1 of 11) protein_coding-exon (ENSMUSG00000016239.11, exon 1 of 11) 974 ENSMUSG00000016239.11 ENSMUSG00000016239 ENSMUST00000126147 Lonrf3 protein_coding Interval_69644 chr16 94807145 94807445 + 0 NA intron (ENSMUSG00000043301.16, intron 3 of 3) protein_coding-intron (ENSMUSG00000043301.16, intron 3 of 4) 49377 ENSMUSG00000043301.16 ENSMUSG00000043301 ENSMUST00000231744 Kcnj6 protein_coding Interval_101997 chr3 14641137 14642154 + 0 NA promoter-TSS (ENSMUSG00000027555.8) protein_coding-promoter-TSS (ENSMUSG00000027555.8) -82 ENSMUSG00000027555.8 ENSMUSG00000027555 ENSMUST00000029071 Car13 protein_coding Interval_90621 chr2 31525915 31526118 + 0 NA Intergenic Intergenic 25290 ENSMUSG00000076441.9 ENSMUSG00000076441 ENSMUST00000130195 Ass1 protein_coding Interval_47374 chr13 82325457 82326450 + 0 NA Intergenic Intergenic 53690 ENSMUSG00000114932.1 ENSMUSG00000114932 ENSMUST00000224376 Gm4936 processed_pseudogene Interval_70016 chr17 4529725 4529987 + 0 NA Intergenic Intergenic -105122 ENSMUSG00000116767.1 ENSMUSG00000116767 ENSMUST00000232624 4930517M08Rik lincRNA Interval_170732 chr9 110389769 110390354 + 0 NA exon (ENSMUSG00000036057.11, exon 15 of 25) protein_coding-exon (ENSMUSG00000036057.11, exon 15 of 25) -3814 ENSMUSG00000036057.11 ENSMUSG00000036057 ENSMUST00000199254 Ptpn23 protein_coding Interval_131840 chr5 140290073 140290436 + 0 NA intron (ENSMUSG00000029554.15, intron 9 of 16) protein_coding-intron (ENSMUSG00000029554.15, intron 9 of 17) -31402 ENSMUSG00000036639.12 ENSMUSG00000036639 ENSMUST00000145898 Nudt1 protein_coding Interval_29621 chr11 85517726 85518447 + 0 NA intron (ENSMUSG00000059439.15, intron 6 of 14) protein_coding-intron (ENSMUSG00000059439.15, intron 15 of 24) 24327 ENSMUSG00000087779.1 ENSMUSG00000087779 ENSMUST00000157154 Gm23765 snRNA Interval_96245 chr2 120909755 120910005 + 0 NA intron (ENSMUSG00000027272.5, intron 3 of 5) protein_coding-intron (ENSMUSG00000027272.5, intron 27 of 46) 20462 ENSMUSG00000027272.5 ENSMUSG00000027272 ENSMUST00000138824 Ubr1 protein_coding Interval_90957 chr2 33717971 33718345 + 0 NA intron (ENSMUSG00000085463.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000085463.1, intron 1 of 1) 741 ENSMUSG00000085463.1 ENSMUSG00000085463 ENSMUST00000130532 9430024E24Rik lincRNA Interval_46456 chr13 66311475 66312505 + 0 NA intron (ENSMUSG00000114616.1, intron 2 of 2) lincRNA-intron (ENSMUSG00000114616.1, intron 2 of 2) -2694 ENSMUSG00000114776.1 ENSMUSG00000114776 ENSMUST00000224087 Gm18260 processed_pseudogene Interval_17463 chr10 77041650 77043099 + 0 NA promoter-TSS (ENSMUSG00000001436.15) protein_coding-promoter-TSS (ENSMUSG00000001436.15) 9690 ENSMUSG00000001436.15 ENSMUSG00000001436 ENSMUST00000131031 Slc19a1 protein_coding Interval_149119 chr7 94212264 94212994 + 0 NA intron (ENSMUSG00000108532.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000108532.1, intron 1 of 1) 15419 ENSMUSG00000096033.2 ENSMUSG00000096033 ENSMUST00000071770 Gm5899 processed_pseudogene Interval_165857 chr9 53867484 53867752 + 0 NA Intergenic Intergenic -16466 ENSMUSG00000059830.3 ENSMUSG00000059830 ENSMUST00000077997 Gm16380 processed_pseudogene Interval_98706 chr2 154435981 154437077 + 0 NA promoter-TSS (ENSMUSG00000038533.15) protein_coding-promoter-TSS (ENSMUSG00000038533.15) -313 ENSMUSG00000038533.15 ENSMUSG00000038533 ENSMUST00000139506 Cbfa2t2 protein_coding Interval_143404 chr7 6430204 6430586 + 0 NA TTS (ENSMUSG00000093536.7) protein_coding-TTS (ENSMUSG00000093536.7) -8293 ENSMUSG00000090824.2 ENSMUSG00000090824 ENSMUST00000168341 Olfr1344 protein_coding Interval_18355 chr10 85157643 85158259 + 0 NA intron (ENSMUSG00000020038.10, intron 1 of 12) protein_coding-intron (ENSMUSG00000020038.10, intron 1 of 12) -6595 ENSMUSG00000020038.10 ENSMUSG00000020038 ENSMUST00000214675 Cry1 protein_coding Interval_78161 chr18 9554810 9555551 + 0 NA Intergenic Intergenic 7883 ENSMUSG00000117641.1 ENSMUSG00000117641 ENSMUST00000234100 Gm46641 processed_pseudogene Interval_126814 chr5 93132027 93132555 + 0 NA intron (ENSMUSG00000058013.11, intron 1 of 9) protein_coding-intron (ENSMUSG00000058013.11, intron 1 of 9) 38755 ENSMUSG00000058013.11 ENSMUSG00000058013 ENSMUST00000201695 Septin11 protein_coding Interval_113755 chr4 58260464 58261624 + 0 NA Intergenic Intergenic -24918 ENSMUSG00000057280.15 ENSMUSG00000057280 ENSMUST00000135879 Musk protein_coding Interval_58521 chr15 35460398 35460871 + 0 NA intron (ENSMUSG00000037646.10, intron 16 of 28) protein_coding-intron (ENSMUSG00000037646.10, intron 16 of 61) -26766 ENSMUSG00000089133.1 ENSMUSG00000089133 ENSMUST00000158508 Gm24771 snoRNA Interval_149232 chr7 96496827 96497151 + 0 NA intron (ENSMUSG00000048078.16, intron 4 of 32) protein_coding-intron (ENSMUSG00000048078.16, intron 4 of 32) -60972 ENSMUSG00000082780.2 ENSMUSG00000082780 ENSMUST00000117302 Rps11-ps5 processed_pseudogene Interval_130788 chr5 130411166 130411553 + 0 NA intron (ENSMUSG00000060371.12, intron 1 of 2) protein_coding-intron (ENSMUSG00000060371.12, intron 1 of 6) 26662 ENSMUSG00000060371.12 ENSMUSG00000060371 ENSMUST00000111288 Caln1 protein_coding Interval_131476 chr5 137468726 137469216 + 0 NA intron (ENSMUSG00000079173.11, intron 8 of 86) protein_coding-intron (ENSMUSG00000079173.11, intron 9 of 87) 16845 ENSMUSG00000029711.13 ENSMUSG00000029711 ENSMUST00000111039 Epo protein_coding Interval_166669 chr9 61733260 61734164 + 0 NA Intergenic Intergenic -29372 ENSMUSG00000111739.1 ENSMUSG00000111739 ENSMUST00000213572 Gm47241 processed_pseudogene Interval_139938 chr6 112915969 112916262 + 0 NA intron (ENSMUSG00000030257.16, intron 1 of 21) protein_coding-intron (ENSMUSG00000030257.16, intron 1 of 9) -30922 ENSMUSG00000108103.1 ENSMUSG00000108103 ENSMUST00000204406 Gm44081 lincRNA Interval_73487 chr17 37946185 37946548 + 0 NA promoter-TSS (ENSMUSG00000092186.1) processed_pseudogene-promoter-TSS (ENSMUSG00000092186.1) -826 ENSMUSG00000092186.1 ENSMUSG00000092186 ENSMUST00000172723 Gm5967 processed_pseudogene Interval_70543 chr17 11867050 11867865 + 0 NA exon (ENSMUSG00000023826.16, exon 3 of 3) protein_coding-exon (ENSMUSG00000023826.16, exon 3 of 3) -135112 ENSMUSG00000104466.1 ENSMUSG00000104466 ENSMUST00000194203 Gm10513 TEC Interval_164832 chr9 42326282 42326752 + 0 NA Intergenic Intergenic -8836 ENSMUSG00000096114.1 ENSMUSG00000096114 ENSMUST00000179241 Gm26272 snoRNA Interval_7721 chr1 133267938 133268781 + 0 NA TTS (ENSMUSG00000041757.17) protein_coding-TTS (ENSMUSG00000041757.17) 1449 ENSMUSG00000101693.1 ENSMUSG00000101693 ENSMUST00000189590 Gm19461 antisense Interval_84437 chr19 10907321 10908500 + 0 NA exon (ENSMUSG00000024735.13, exon 16 of 16) protein_coding-exon (ENSMUSG00000024735.13, exon 16 of 16) 7628 ENSMUSG00000024735.13 ENSMUSG00000024735 ENSMUST00000191552 Prpf19 protein_coding Interval_28967 chr11 79624773 79625404 + 0 NA intron (ENSMUSG00000017639.13, intron 3 of 14) protein_coding-intron (ENSMUSG00000017639.13, intron 3 of 14) -1925 ENSMUSG00000087434.1 ENSMUSG00000087434 ENSMUST00000145652 Rab11fip4os1 antisense Interval_46002 chr13 59910411 59910628 + 0 NA intron (ENSMUSG00000114490.1, intron 1 of 3) lincRNA-intron (ENSMUSG00000114490.1, intron 1 of 2) 5269 ENSMUSG00000114490.1 ENSMUSG00000114490 ENSMUST00000223935 Gm19866 lincRNA Interval_78915 chr18 21563831 21564162 + 0 NA intron (ENSMUSG00000042514.11, intron 5 of 8) protein_coding-intron (ENSMUSG00000042514.11, intron 4 of 7) -69897 ENSMUSG00000117386.1 ENSMUSG00000117386 ENSMUST00000234227 Gm4837 processed_pseudogene Interval_114037 chr4 62663396 62663979 + 0 NA promoter-TSS (ENSMUSG00000059810.18) protein_coding-promoter-TSS (ENSMUSG00000059810.18) -29975 ENSMUSG00000085177.1 ENSMUSG00000085177 ENSMUST00000130206 Gm11209 antisense Interval_157217 chr8 68051727 68052199 + 0 NA intron (ENSMUSG00000030465.19, intron 2 of 16) protein_coding-intron (ENSMUSG00000030465.19, intron 1 of 9) 41623 ENSMUSG00000077545.1 ENSMUSG00000077545 ENSMUST00000104357 Gm22018 snoRNA Interval_6508 chr1 113445659 113445932 + 0 NA Intergenic Intergenic 120188 ENSMUSG00000102105.1 ENSMUSG00000102105 ENSMUST00000186856 Gm17946 processed_pseudogene Interval_147342 chr7 65982344 65983050 + 0 NA intron (ENSMUSG00000030513.14, intron 10 of 19) protein_coding-intron (ENSMUSG00000030513.14, intron 12 of 21) 29685 ENSMUSG00000030513.14 ENSMUSG00000030513 ENSMUST00000177272 Pcsk6 protein_coding Interval_104286 chr3 62860898 62861440 + 0 NA Intergenic Intergenic 63064 ENSMUSG00000063001.10 ENSMUSG00000063001 ENSMUST00000077976 Gm9701 processed_pseudogene Interval_160064 chr8 106134947 106135456 + 0 NA promoter-TSS (ENSMUSG00000084128.10) protein_coding-promoter-TSS (ENSMUSG00000084128.10) 1484 ENSMUSG00000084128.10 ENSMUSG00000084128 ENSMUST00000155164 Esrp2 protein_coding Interval_57336 chr15 8884776 8885270 + 0 NA Intergenic Intergenic -29461 ENSMUSG00000107028.1 ENSMUSG00000107028 ENSMUST00000202103 Gm5043 processed_pseudogene Interval_159602 chr8 95753743 95753955 + 0 NA promoter-TSS (ENSMUSG00000106145.1) miRNA-promoter-TSS (ENSMUSG00000106145.1) -635 ENSMUSG00000106145.1 ENSMUSG00000106145 ENSMUST00000197815 Mir7073 miRNA Interval_111645 chr4 25103687 25104462 + 0 NA intron (ENSMUSG00000085885.1, intron 2 of 4) processed_transcript-intron (ENSMUSG00000085885.1, intron 2 of 4) -136625 ENSMUSG00000046219.9 ENSMUSG00000046219 ENSMUST00000139588 C230012O17Rik processed_transcript Interval_102667 chr3 29236082 29236357 + 0 NA intron (ENSMUSG00000063600.14, intron 4 of 5) protein_coding-intron (ENSMUSG00000063600.14, intron 4 of 12) 16332 ENSMUSG00000102579.1 ENSMUSG00000102579 ENSMUST00000195304 Gm37965 TEC Interval_16184 chr10 61299760 61300857 + 0 NA exon (ENSMUSG00000037202.6, exon 1 of 2) protein_coding-exon (ENSMUSG00000037202.6, exon 1 of 2) 2475 ENSMUSG00000037202.6 ENSMUSG00000037202 ENSMUST00000035419 Prf1 protein_coding Interval_92341 chr2 59144086 59144355 + 0 NA intron (ENSMUSG00000036641.9, intron 1 of 14) protein_coding-intron (ENSMUSG00000036641.9, intron 1 of 14) 4403 ENSMUSG00000084250.1 ENSMUSG00000084250 ENSMUST00000118185 Gm13550 processed_pseudogene Interval_92564 chr2 60720263 60721163 + 0 NA intron (ENSMUSG00000026971.15, intron 1 of 16) protein_coding-intron (ENSMUSG00000026971.15, intron 1 of 17) -46987 ENSMUSG00000026971.15 ENSMUSG00000026971 ENSMUST00000142696 Itgb6 protein_coding Interval_84329 chr19 10157996 10158197 + 0 NA Intergenic Intergenic 18065 ENSMUSG00000117700.1 ENSMUSG00000117700 ENSMUST00000235345 Gm50359 processed_pseudogene Interval_57265 chr15 8236470 8237305 + 0 NA intron (ENSMUSG00000039801.7, intron 38 of 52) protein_coding-intron (ENSMUSG00000039801.7, intron 38 of 52) 13744 ENSMUSG00000039801.7 ENSMUSG00000039801 ENSMUST00000128772 Cplane1 protein_coding Interval_152517 chr7 133758822 133760396 + 0 NA promoter-TSS (ENSMUSG00000030986.13) protein_coding-promoter-TSS (ENSMUSG00000030986.13) 11985 ENSMUSG00000109635.1 ENSMUSG00000109635 ENSMUST00000211382 Gm45670 antisense Interval_160478 chr8 109853533 109854110 + 0 NA intron (ENSMUSG00000031731.16, intron 18 of 23) protein_coding-intron (ENSMUSG00000031731.16, intron 17 of 22) -9287 ENSMUSG00000031731.16 ENSMUSG00000031731 ENSMUST00000179104 Ap1g1 protein_coding Interval_84833 chr19 17293706 17293929 + 0 NA Intergenic Intergenic -27479 ENSMUSG00000117946.1 ENSMUSG00000117946 ENSMUST00000237419 Gm50280 processed_pseudogene Interval_76890 chr17 84757915 84759346 + 0 NA intron (ENSMUSG00000024120.12, intron 14 of 37) protein_coding-intron (ENSMUSG00000024120.12, intron 14 of 37) -26162 ENSMUSG00000117412.1 ENSMUSG00000117412 ENSMUST00000234983 Gm49979 TEC Interval_140798 chr6 121412438 121413854 + 0 NA exon (ENSMUSG00000040797.16, exon 4 of 14) protein_coding-exon (ENSMUSG00000040797.16, exon 4 of 14) 56326 ENSMUSG00000030109.15 ENSMUSG00000030109 ENSMUST00000170339 Slc6a12 protein_coding Interval_82868 chr18 77605631 77606705 + 0 NA Intergenic Intergenic -76446 ENSMUSG00000077593.1 ENSMUSG00000077593 ENSMUST00000104405 Gm26014 snoRNA Interval_244 KZ289068.1 281713 282092 + 0 NA NA NA NA NA Interval_157538 chr8 71285869 71286140 + 0 NA intron (ENSMUSG00000004677.17, intron 1 of 39) protein_coding-intron (ENSMUSG00000004677.17, intron 1 of 39) 13290 ENSMUSG00000004677.17 ENSMUSG00000004677 ENSMUST00000212412 Myo9b protein_coding Interval_14046 chr10 25984063 25984477 + 0 NA intron (ENSMUSG00000049420.9, intron 1 of 2) protein_coding-intron (ENSMUSG00000049420.9, intron 1 of 2) 84991 ENSMUSG00000112324.1 ENSMUSG00000112324 ENSMUST00000219283 Gm47939 lincRNA Interval_61621 chr15 83007500 83008050 + 0 NA intron (ENSMUSG00000058099.16, intron 4 of 5) protein_coding-intron (ENSMUSG00000058099.16, intron 4 of 5) 15308 ENSMUSG00000058099.16 ENSMUSG00000058099 ENSMUST00000231204 Nfam1 protein_coding Interval_52100 chr14 36018776 36019397 + 0 NA Intergenic Intergenic 5138 ENSMUSG00000115237.1 ENSMUSG00000115237 ENSMUST00000227667 Gm46474 unprocessed_pseudogene Interval_79997 chr18 36550134 36550612 + 0 NA intron (ENSMUSG00000024485.16, intron 20 of 20) protein_coding-intron (ENSMUSG00000024485.16, intron 19 of 19) 22222 ENSMUSG00000024485.16 ENSMUSG00000024485 ENSMUST00000235382 Slc4a9 protein_coding Interval_81211 chr18 56510576 56511716 + 0 NA intron (ENSMUSG00000053644.13, intron 2 of 2) protein_coding-intron (ENSMUSG00000053644.13, intron 2 of 2) -7094 ENSMUSG00000118186.1 ENSMUSG00000118186 ENSMUST00000235656 Gm8642 processed_pseudogene Interval_23130 chr11 20082346 20083157 + 0 NA intron (ENSMUSG00000020152.7, intron 4 of 5) protein_coding-intron (ENSMUSG00000020152.7, intron 4 of 8) 30158 ENSMUSG00000020152.7 ENSMUSG00000020152 ENSMUST00000134779 Actr2 protein_coding Interval_58184 chr15 30457282 30457892 + 0 NA promoter-TSS (ENSMUSG00000022240.10) protein_coding-promoter-TSS (ENSMUSG00000022240.10) 28743 ENSMUSG00000115073.1 ENSMUSG00000115073 ENSMUST00000226263 Gm49283 TEC Interval_121500 chr4 156213181 156214801 + 0 NA Intergenic Intergenic -1877 ENSMUSG00000078486.3 ENSMUSG00000078486 ENSMUST00000105572 Perm1 protein_coding Interval_51878 chr14 33303370 33303918 + 0 NA intron (ENSMUSG00000063506.14, intron 3 of 3) protein_coding-intron (ENSMUSG00000063506.14, intron 4 of 10) 66499 ENSMUSG00000087639.1 ENSMUSG00000087639 ENSMUST00000137359 Gm15512 antisense Interval_111964 chr4 32861961 32863204 + 0 NA intron (ENSMUSG00000040183.13, intron 1 of 15) protein_coding-intron (ENSMUSG00000040183.13, intron 2 of 16) -1899 ENSMUSG00000040183.13 ENSMUSG00000040183 ENSMUST00000149650 Ankrd6 protein_coding Interval_137476 chr6 72671063 72671259 + 0 NA exon (ENSMUSG00000055799.13, exon 1 of 3) protein_coding-exon (ENSMUSG00000055799.13, exon 1 of 3) 243 ENSMUSG00000055799.13 ENSMUSG00000055799 ENSMUST00000182651 Tcf7l1 protein_coding Interval_63336 chr15 100415161 100415403 + 0 NA intron (ENSMUSG00000023030.16, intron 1 of 5) protein_coding-intron (ENSMUSG00000023030.16, intron 1 of 16) -7911 ENSMUSG00000087444.1 ENSMUSG00000087444 ENSMUST00000148928 Gm5475 protein_coding Interval_122961 chr5 27854095 27854688 + 0 NA exon (ENSMUSG00000039106.6, exon 2 of 2) protein_coding-exon (ENSMUSG00000039106.6, exon 2 of 2) 6047 ENSMUSG00000104882.1 ENSMUSG00000104882 ENSMUST00000196173 Gm43096 processed_pseudogene Interval_31082 chr11 98037672 98038237 + 0 NA exon (ENSMUSG00000017400.10, exon 11 of 11) protein_coding-exon (ENSMUSG00000017400.10, exon 11 of 11) 5588 ENSMUSG00000017400.10 ENSMUSG00000017400 ENSMUST00000131519 Stac2 protein_coding Interval_120237 chr4 144737158 144737751 + 0 NA Intergenic Intergenic -22149 ENSMUSG00000041735.8 ENSMUSG00000041735 ENSMUST00000036876 AAdacl4fm3 protein_coding Interval_118550 chr4 132453007 132453252 + 0 NA Intergenic Intergenic 10202 ENSMUSG00000066042.4 ENSMUSG00000066042 ENSMUST00000123604 Med18 protein_coding Interval_26835 chr11 60944334 60945143 + 0 NA exon (ENSMUSG00000018932.9, exon 6 of 12) protein_coding-exon (ENSMUSG00000018932.9, exon 6 of 12) 12684 ENSMUSG00000018932.9 ENSMUSG00000018932 ENSMUST00000137609 Map2k3 protein_coding Interval_66069 chr16 31410934 31412710 + 0 NA promoter-TSS (ENSMUSG00000116690.1) lincRNA-promoter-TSS (ENSMUSG00000116690.1) -2233 ENSMUSG00000116690.1 ENSMUSG00000116690 ENSMUST00000231871 Gm49736 lincRNA Interval_58321 chr15 32353572 32354241 + 0 NA intron (ENSMUSG00000022231.10, intron 2 of 7) protein_coding-intron (ENSMUSG00000022231.10, intron 2 of 22) 109081 ENSMUSG00000022231.10 ENSMUSG00000022231 ENSMUST00000227429 Sema5a protein_coding Interval_13781 chr10 22016860 22018609 + 0 NA Intergenic Intergenic 29251 ENSMUSG00000097086.1 ENSMUSG00000097086 ENSMUST00000180915 Gm7672 processed_pseudogene Interval_116340 chr4 109979942 109980623 + 0 NA exon (ENSMUSG00000047143.3, exon 2 of 3) protein_coding-exon (ENSMUSG00000047143.3, exon 2 of 3) 2229 ENSMUSG00000047143.3 ENSMUSG00000047143 ENSMUST00000061187 Dmrta2 protein_coding Interval_113269 chr4 52794462 52794871 + 0 NA Intergenic Intergenic -26822 ENSMUSG00000081975.1 ENSMUSG00000081975 ENSMUST00000120435 Gm12482 processed_pseudogene Interval_161238 chr8 119010146 119010454 + 0 NA intron (ENSMUSG00000031841.19, intron 6 of 7) protein_coding-intron (ENSMUSG00000031841.19, intron 6 of 13) -141165 ENSMUSG00000031841.19 ENSMUSG00000031841 ENSMUST00000151842 Cdh13 protein_coding Interval_84787 chr19 16689185 16689527 + 0 NA intron (ENSMUSG00000046230.11, intron 35 of 73) protein_coding-intron (ENSMUSG00000046230.11, intron 35 of 71) -26443 ENSMUSG00000114931.1 ENSMUSG00000114931 ENSMUST00000223692 Gm32256 processed_pseudogene Interval_111094 chr4 12005211 12005420 + 0 NA intron (ENSMUSG00000085027.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000085027.1, intron 1 of 1) 3728 ENSMUSG00000085027.1 ENSMUSG00000085027 ENSMUST00000156947 Gm11840 lincRNA Interval_51374 chr14 27071781 27072282 + 0 NA intron (ENSMUSG00000040717.6, intron 3 of 13) protein_coding-intron (ENSMUSG00000040717.6, intron 1 of 12) 4634 ENSMUSG00000040717.6 ENSMUSG00000040717 ENSMUST00000225829 Il17rd protein_coding Interval_104315 chr3 63272098 63273254 + 0 NA intron (ENSMUSG00000027820.12, intron 1 of 5) protein_coding-intron (ENSMUSG00000027820.12, intron 1 of 5) -22590 ENSMUSG00000027820.12 ENSMUSG00000027820 ENSMUST00000193805 Mme protein_coding Interval_135126 chr6 35871033 35872300 + 0 NA Intergenic Intergenic -55045 ENSMUSG00000107145.1 ENSMUSG00000107145 ENSMUST00000202865 Gm43442 processed_pseudogene Interval_151374 chr7 121935280 121935753 + 0 NA intron (ENSMUSG00000034951.10, intron 13 of 15) protein_coding-intron (ENSMUSG00000034951.10, intron 13 of 16) 36288 ENSMUSG00000030873.9 ENSMUSG00000030873 ENSMUST00000206079 Scnn1b protein_coding Interval_159530 chr8 95254729 95255909 + 0 NA intron (ENSMUSG00000031789.17, intron 13 of 20) protein_coding-intron (ENSMUSG00000031789.17, intron 25 of 32) 45347 ENSMUSG00000031789.17 ENSMUSG00000031789 ENSMUST00000212237 Cngb1 protein_coding Interval_56678 chr14 121329215 121330212 + 0 NA intron (ENSMUSG00000063410.8, intron 2 of 4) protein_coding-intron (ENSMUSG00000063410.8, intron 2 of 10) 50298 ENSMUSG00000063410.8 ENSMUSG00000063410 ENSMUST00000226158 Stk24 protein_coding Interval_168628 chr9 84483109 84483411 + 0 NA Intergenic Intergenic 59276 ENSMUSG00000099927.1 ENSMUSG00000099927 ENSMUST00000190511 Gm8226 processed_pseudogene Interval_142169 chr6 137773147 137774188 + 0 NA intron (ENSMUSG00000030225.11, intron 1 of 4) protein_coding-intron (ENSMUSG00000030225.11, intron 1 of 8) 28627 ENSMUSG00000030224.10 ENSMUSG00000030224 ENSMUST00000137235 Strap protein_coding Interval_118324 chr4 130302355 130302836 + 0 NA Intergenic Intergenic -6000 ENSMUSG00000028773.8 ENSMUSG00000028773 ENSMUST00000070532 Fabp3 protein_coding Interval_118630 chr4 132889871 132890476 + 0 NA Intergenic Intergenic 5410 ENSMUSG00000083816.3 ENSMUSG00000083816 ENSMUST00000117591 Gm13033 processed_pseudogene Interval_144867 chr7 28675170 28677893 + 0 NA intron (ENSMUSG00000108905.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000108905.1, intron 1 of 1) -16508 ENSMUSG00000037463.14 ENSMUSG00000037463 ENSMUST00000127368 Fbxo27 protein_coding Interval_16546 chr10 63536517 63537019 + 0 NA intron (ENSMUSG00000060843.11, intron 2 of 17) protein_coding-intron (ENSMUSG00000060843.11, intron 1 of 16) -114979 ENSMUSG00000048185.5 ENSMUSG00000048185 ENSMUST00000054760 Gm7075 protein_coding Interval_13042 chr10 9889327 9889549 + 0 NA intron (ENSMUSG00000019790.17, intron 2 of 25) protein_coding-intron (ENSMUSG00000019790.17, intron 2 of 27) -11875 ENSMUSG00000112146.1 ENSMUSG00000112146 ENSMUST00000218800 Gm46210 lincRNA Interval_139444 chr6 100222884 100223953 + 0 NA Intergenic Intergenic -24714 ENSMUSG00000108269.1 ENSMUSG00000108269 ENSMUST00000203798 Gm18422 transcribed_processed_pseudogene Interval_87593 chr19 53631614 53631835 + 0 NA intron (ENSMUSG00000024974.10, intron 18 of 28) protein_coding-intron (ENSMUSG00000024974.10, intron 18 of 28) -11634 ENSMUSG00000024974.10 ENSMUSG00000024974 ENSMUST00000171083 Smc3 protein_coding Interval_72350 chr17 29356101 29357101 + 0 NA Intergenic Intergenic -16750 ENSMUSG00000024013.15 ENSMUSG00000024013 ENSMUST00000144616 Fgd2 protein_coding Interval_53465 chr14 57693778 57694510 + 0 NA exon (ENSMUSG00000021959.16, exon 7 of 7) protein_coding-exon (ENSMUSG00000021959.16, exon 7 of 7) -3665 ENSMUSG00000064525.1 ENSMUSG00000064525 ENSMUST00000082591 Gm26440 snoRNA Interval_142666 chr6 144908880 144909084 + 0 NA Intergenic Intergenic -105350 ENSMUSG00000087850.1 ENSMUSG00000087850 ENSMUST00000157225 Gm22792 snoRNA Interval_141767 chr6 134329102 134330516 + 0 NA intron (ENSMUSG00000107666.1, intron 3 of 8) antisense-intron (ENSMUSG00000107666.1, intron 3 of 8) -68831 ENSMUSG00000030200.13 ENSMUSG00000030200 ENSMUST00000142612 Bcl2l14 protein_coding Interval_21664 chr11 3545674 3546335 + 0 NA Intergenic Intergenic -6712 ENSMUSG00000020439.17 ENSMUSG00000020439 ENSMUST00000151804 Smtn protein_coding Interval_74703 chr17 56065875 56066179 + 0 NA intron (ENSMUSG00000002835.9, intron 9 of 10) protein_coding-intron (ENSMUSG00000002835.9, intron 13 of 13) 6413 ENSMUSG00000019578.11 ENSMUSG00000019578 ENSMUST00000139371 Ubxn6 protein_coding Interval_100331 chr2 168440732 168441225 + 0 NA Intergenic Intergenic -22404 ENSMUSG00000082239.1 ENSMUSG00000082239 ENSMUST00000119539 Gm14234 processed_pseudogene Interval_89125 chr2 16914503 16914874 + 0 NA Intergenic Intergenic 45330 ENSMUSG00000076950.1 ENSMUSG00000076950 ENSMUST00000103762 Gm24933 miRNA Interval_40842 chr12 108786419 108787084 + 0 NA Intergenic Intergenic 5992 ENSMUSG00000114045.1 ENSMUSG00000114045 ENSMUST00000223001 Gm34220 TEC Interval_12522 chr1 194798486 194798760 + 0 NA intron (ENSMUSG00000026640.12, intron 22 of 31) protein_coding-intron (ENSMUSG00000026640.12, intron 22 of 31) 21464 ENSMUSG00000103597.1 ENSMUSG00000103597 ENSMUST00000191940 Gm19777 processed_pseudogene Interval_146348 chr7 45451285 45452069 + 0 NA intron (ENSMUSG00000003865.16, intron 12 of 14) protein_coding-intron (ENSMUSG00000003865.16, intron 13 of 15) 6520 ENSMUSG00000076036.1 ENSMUSG00000076036 ENSMUST00000102082 Gm22133 miRNA Interval_4578 chr1 75221880 75222131 + 0 NA intron (ENSMUSG00000096094.2, intron 2 of 2) protein_coding-intron (ENSMUSG00000096094.2, intron 2 of 2) -3117 ENSMUSG00000026202.13 ENSMUSG00000026202 ENSMUST00000189131 Tuba4a protein_coding Interval_150922 chr7 116349112 116349322 + 0 NA intron (ENSMUSG00000030660.9, intron 11 of 17) protein_coding-intron (ENSMUSG00000030660.9, intron 26 of 32) -8588 ENSMUSG00000030660.9 ENSMUSG00000030660 ENSMUST00000205767 Pik3c2a protein_coding Interval_77710 chr17 94568603 94568812 + 0 NA Intergenic Intergenic -39478 ENSMUSG00000117476.1 ENSMUSG00000117476 ENSMUST00000234959 Gm9416 processed_pseudogene Interval_47688 chr13 91284438 91285387 + 0 NA Intergenic Intergenic -22494 ENSMUSG00000114579.1 ENSMUSG00000114579 ENSMUST00000224136 Gm4130 processed_pseudogene Interval_128643 chr5 114467119 114468417 + 0 NA Intergenic Intergenic 15348 ENSMUSG00000041939.14 ENSMUSG00000041939 ENSMUST00000139420 Mvk protein_coding Interval_110667 chr4 6036496 6037678 + 0 NA intron (ENSMUSG00000049119.14, intron 4 of 4) protein_coding-intron (ENSMUSG00000049119.14, intron 4 of 4) -32787 ENSMUSG00000084360.1 ENSMUSG00000084360 ENSMUST00000121336 Gm11797 processed_pseudogene Interval_26219 chr11 55197587 55197876 + 0 NA promoter-TSS (ENSMUSG00000084980.1) antisense-promoter-TSS (ENSMUSG00000084980.1) -49 ENSMUSG00000084980.1 ENSMUSG00000084980 ENSMUST00000142953 Slc36a1os antisense Interval_103659 chr3 51433375 51434862 + 0 NA intron (ENSMUSG00000063273.11, intron 1 of 4) protein_coding-intron (ENSMUSG00000063273.11, intron 1 of 19) -6799 ENSMUSG00000063273.11 ENSMUSG00000063273 ENSMUST00000193267 Naa15 protein_coding Interval_49069 chr13 107699478 107701456 + 0 NA Intergenic Intergenic 13070 ENSMUSG00000102000.6 ENSMUSG00000102000 ENSMUST00000188490 1700006H21Rik lincRNA Interval_105303 chr3 84723873 84724204 + 0 NA intron (ENSMUSG00000102805.5, intron 3 of 9) protein_coding-intron (ENSMUSG00000102805.5, intron 3 of 9) 57828 ENSMUSG00000056498.13 ENSMUSG00000056498 ENSMUST00000128344 Tmem154 protein_coding Interval_142732 chr6 145200238 145200464 + 0 NA intron (ENSMUSG00000043541.16, intron 4 of 6) protein_coding-intron (ENSMUSG00000043541.16, intron 5 of 15) 10558 ENSMUSG00000043541.16 ENSMUSG00000043541 ENSMUST00000203558 Casc1 protein_coding Interval_13896 chr10 24384210 24384494 + 0 NA Intergenic Intergenic -63138 ENSMUSG00000086148.1 ENSMUSG00000086148 ENSMUST00000134627 Gm15271 lincRNA Interval_39509 chr12 88984295 88984558 + 0 NA intron (ENSMUSG00000066392.12, intron 2 of 19) protein_coding-intron (ENSMUSG00000066392.12, intron 2 of 19) 270935 ENSMUSG00000103136.1 ENSMUSG00000103136 ENSMUST00000194420 Gm37980 TEC Interval_51136 chr14 24059688 24059988 + 0 NA intron (ENSMUSG00000114722.1, intron 1 of 3) lincRNA-intron (ENSMUSG00000114722.1, intron 1 of 3) -9896 ENSMUSG00000090381.2 ENSMUSG00000090381 ENSMUST00000109467 Gm6158 processed_pseudogene Interval_12432 chr1 193396593 193396908 + 0 NA Intergenic Intergenic -26525 ENSMUSG00000016179.11 ENSMUSG00000016179 ENSMUST00000165718 Camk1g protein_coding Interval_15675 chr10 53430261 53430898 + 0 NA Intergenic Intergenic 20697 ENSMUSG00000112132.1 ENSMUSG00000112132 ENSMUST00000218737 Gm36229 lincRNA Interval_21045 chr10 125220057 125220432 + 0 NA exon (ENSMUSG00000020102.15, exon 6 of 6) protein_coding-exon (ENSMUSG00000020102.15, exon 6 of 6) -88668 ENSMUSG00000109803.1 ENSMUSG00000109803 ENSMUST00000209665 Gm45604 antisense Interval_26978 chr11 62036631 62037304 + 0 NA intron (ENSMUSG00000042331.13, intron 2 of 14) protein_coding-intron (ENSMUSG00000042331.13, intron 2 of 7) 18103 ENSMUSG00000042331.13 ENSMUSG00000042331 ENSMUST00000202179 Specc1 protein_coding Interval_65513 chr16 22955366 22956834 + 0 NA exon (ENSMUSG00000022877.9, exon 4 of 7) protein_coding-exon (ENSMUSG00000022877.9, exon 4 of 7) 5000 ENSMUSG00000022877.9 ENSMUSG00000022877 ENSMUST00000232422 Hrg protein_coding Interval_70431 chr17 10185365 10185767 + 0 NA Intergenic Intergenic 133795 ENSMUSG00000062078.15 ENSMUSG00000062078 ENSMUST00000233684 Qk protein_coding Interval_13972 chr10 25197870 25199004 + 0 NA intron (ENSMUSG00000039166.16, intron 2 of 2) protein_coding-intron (ENSMUSG00000039166.16, intron 7 of 7) 22254 ENSMUSG00000039166.16 ENSMUSG00000039166 ENSMUST00000176231 Akap7 protein_coding Interval_2353 chr1 38334224 38334422 + 0 NA intron (ENSMUSG00000037138.18, intron 7 of 22) protein_coding-intron (ENSMUSG00000037138.18, intron 7 of 22) 26421 ENSMUSG00000085280.1 ENSMUSG00000085280 ENSMUST00000129696 Gm16151 antisense Interval_62947 chr15 98089781 98090015 + 0 NA intron (ENSMUSG00000033075.17, intron 1 of 1) protein_coding-intron (ENSMUSG00000033075.17, intron 1 of 17) -2354 ENSMUSG00000033075.17 ENSMUSG00000033075 ENSMUST00000182611 Senp1 protein_coding Interval_88016 chr19 57924211 57924425 + 0 NA intron (ENSMUSG00000054843.9, intron 26 of 28) protein_coding-intron (ENSMUSG00000054843.9, intron 26 of 28) -126849 ENSMUSG00000093757.1 ENSMUSG00000093757 ENSMUST00000176631 Mir5623 miRNA Interval_47783 chr13 92709693 92710421 + 0 NA exon (ENSMUSG00000021703.9, exon 12 of 12) protein_coding-exon (ENSMUSG00000021703.9, exon 12 of 12) 4275 ENSMUSG00000021703.9 ENSMUSG00000021703 ENSMUST00000224458 Serinc5 protein_coding Interval_87009 chr19 45531056 45531558 + 0 NA Intergenic Intergenic 29224 ENSMUSG00000025218.6 ENSMUSG00000025218 ENSMUST00000026239 Poll protein_coding Interval_140092 chr6 114071374 114071859 + 0 NA Intergenic Intergenic 9420 ENSMUSG00000107474.1 ENSMUSG00000107474 ENSMUST00000204499 Gm43932 processed_pseudogene Interval_13279 chr10 14047084 14047403 + 0 NA intron (ENSMUSG00000015501.10, intron 2 of 3) protein_coding-intron (ENSMUSG00000015501.10, intron 1 of 8) 80219 ENSMUSG00000015501.10 ENSMUSG00000015501 ENSMUST00000191464 Hivep2 protein_coding Interval_64638 chr16 13818568 13819902 + 0 NA promoter-TSS (ENSMUSG00000022681.15) protein_coding-promoter-TSS (ENSMUSG00000022681.15) 3 ENSMUSG00000099314.1 ENSMUSG00000099314 ENSMUST00000183701 Gm27734 miRNA Interval_60972 chr15 78405591 78406913 + 0 NA promoter-TSS (ENSMUSG00000071711.12) protein_coding-promoter-TSS (ENSMUSG00000071711.12) -400 ENSMUSG00000044986.10 ENSMUSG00000044986 ENSMUST00000231525 Tst protein_coding Interval_4719 chr1 77589173 77589553 + 0 NA Intergenic Intergenic 18691 ENSMUSG00000101506.1 ENSMUSG00000101506 ENSMUST00000185671 Gm28385 processed_pseudogene Interval_60033 chr15 64115361 64116060 + 0 NA intron (ENSMUSG00000022377.16, intron 25 of 30) protein_coding-intron (ENSMUSG00000022377.16, intron 25 of 30) 8096 ENSMUSG00000022377.16 ENSMUSG00000022377 ENSMUST00000175963 Asap1 protein_coding Interval_31043 chr11 97839197 97839564 + 0 NA TTS (ENSMUSG00000038366.15) protein_coding-TTS (ENSMUSG00000038366.15) -1939 ENSMUSG00000050538.8 ENSMUSG00000050538 ENSMUST00000170806 B230217C12Rik protein_coding Interval_166369 chr9 58700588 58701138 + 0 NA intron (ENSMUSG00000074269.10, intron 2 of 2) protein_coding-intron (ENSMUSG00000074269.10, intron 2 of 5) -4852 ENSMUSG00000093473.1 ENSMUSG00000093473 ENSMUST00000177528 Gm20620 processed_pseudogene Interval_64835 chr16 16301570 16304147 + 0 NA promoter-TSS (ENSMUSG00000022792.16) protein_coding-promoter-TSS (ENSMUSG00000022792.16) -1742 ENSMUSG00000022792.16 ENSMUSG00000022792 ENSMUST00000162734 Yars2 protein_coding Interval_47844 chr13 93717535 93717864 + 0 NA exon (ENSMUSG00000042102.7, exon 13 of 16) protein_coding-exon (ENSMUSG00000042102.7, exon 13 of 16) 1476 ENSMUSG00000087334.1 ENSMUSG00000087334 ENSMUST00000148316 AW495222 antisense Interval_25092 chr11 43804574 43804756 + 0 NA intron (ENSMUSG00000050541.14, intron 1 of 1) protein_coding-intron (ENSMUSG00000050541.14, intron 4 of 4) 31667 ENSMUSG00000050541.14 ENSMUSG00000050541 ENSMUST00000139906 Adra1b protein_coding Interval_85529 chr19 28115042 28115992 + 0 NA Intergenic Intergenic 26661 ENSMUSG00000101084.1 ENSMUSG00000101084 ENSMUST00000186880 Gm28228 lincRNA Interval_160988 chr8 116682495 116683435 + 0 NA intron (ENSMUSG00000031758.10, intron 1 of 6) protein_coding-intron (ENSMUSG00000031758.10, intron 1 of 6) 50026 ENSMUSG00000031758.10 ENSMUSG00000031758 ENSMUST00000109102 Cdyl2 protein_coding Interval_21682 chr11 3665044 3665642 + 0 NA intron (ENSMUSG00000034543.15, intron 4 of 5) protein_coding-intron (ENSMUSG00000034543.15, intron 4 of 26) -8552 ENSMUSG00000088250.1 ENSMUSG00000088250 ENSMUST00000157625 Gm26393 snRNA Interval_153336 chr7 143723439 143724115 + 0 NA intron (ENSMUSG00000037606.18, intron 1 of 5) protein_coding-intron (ENSMUSG00000037606.18, intron 1 of 21) 16522 ENSMUSG00000037606.18 ENSMUSG00000037606 ENSMUST00000153864 Osbpl5 protein_coding Interval_8311 chr1 137203477 137204633 + 0 NA Intergenic Intergenic 11592 ENSMUSG00000077207.1 ENSMUSG00000077207 ENSMUST00000104019 Gm25609 snRNA Interval_120478 chr4 148866141 148867399 + 0 NA intron (ENSMUSG00000028977.17, intron 2 of 20) protein_coding-intron (ENSMUSG00000028977.17, intron 2 of 15) 47554 ENSMUSG00000086766.1 ENSMUSG00000086766 ENSMUST00000151967 Gm15969 antisense Interval_13312 chr10 14543893 14546298 + 0 NA promoter-TSS (ENSMUSG00000039116.7) protein_coding-promoter-TSS (ENSMUSG00000039116.7) -59 ENSMUSG00000039116.7 ENSMUSG00000039116 ENSMUST00000207953 Adgrg6 protein_coding Interval_116991 chr4 118756403 118757254 + 0 NA intron (ENSMUSG00000095218.3, intron 1 of 2) protein_coding-intron (ENSMUSG00000095218.3, intron 1 of 2) 1909 ENSMUSG00000095218.3 ENSMUSG00000095218 ENSMUST00000084315 Olfr1338 protein_coding Interval_26616 chr11 59248871 59250257 + 0 NA exon (ENSMUSG00000009900.7, exon 4 of 4) protein_coding-exon (ENSMUSG00000009900.7, exon 4 of 4) -21402 ENSMUSG00000048076.14 ENSMUSG00000048076 ENSMUST00000061242 Arf1 protein_coding Interval_32989 chr11 113541936 113543074 + 0 NA intron (ENSMUSG00000041654.15, intron 3 of 4) protein_coding-intron (ENSMUSG00000041654.15, intron 3 of 10) 23274 ENSMUSG00000041654.15 ENSMUSG00000041654 ENSMUST00000123153 Slc39a11 protein_coding Interval_166328 chr9 58362637 58363896 + 0 NA intron (ENSMUSG00000036244.5, intron 4 of 10) protein_coding-intron (ENSMUSG00000036244.5, intron 4 of 10) 7103 ENSMUSG00000036244.5 ENSMUSG00000036244 ENSMUST00000213847 Tbc1d21 protein_coding Interval_10125 chr1 165948285 165948868 + 0 NA intron (ENSMUSG00000026565.18, intron 1 of 16) protein_coding-intron (ENSMUSG00000026565.18, intron 1 of 14) 6958 ENSMUSG00000099008.1 ENSMUSG00000099008 ENSMUST00000184037 Gm17976 processed_pseudogene Interval_98558 chr2 153216825 153217497 + 0 NA Intergenic Intergenic 8280 ENSMUSG00000074671.6 ENSMUSG00000074671 ENSMUST00000099194 Tspyl3 protein_coding Interval_150140 chr7 107339125 107340647 + 0 NA Intergenic Intergenic -20123 ENSMUSG00000076951.1 ENSMUSG00000076951 ENSMUST00000103763 Gm24932 miRNA Interval_117739 chr4 125933402 125933668 + 0 NA Intergenic Intergenic -11118 ENSMUSG00000085562.7 ENSMUSG00000085562 ENSMUST00000144539 2610028E06Rik lincRNA Interval_168521 chr9 83018784 83018987 + 0 NA intron (ENSMUSG00000111839.1, intron 3 of 3) lincRNA-intron (ENSMUSG00000111839.1, intron 3 of 3) 10282 ENSMUSG00000111839.1 ENSMUSG00000111839 ENSMUST00000216894 Gm39383 lincRNA Interval_140876 chr6 122521626 122523336 + 0 NA promoter-TSS (ENSMUSG00000030116.14) protein_coding-promoter-TSS (ENSMUSG00000030116.14) 8898 ENSMUSG00000030116.14 ENSMUSG00000030116 ENSMUST00000126357 Mfap5 protein_coding Interval_4750 chr1 78307620 78308076 + 0 NA Intergenic Intergenic -2497 ENSMUSG00000032908.9 ENSMUSG00000032908 ENSMUST00000036172 Sgpp2 protein_coding Interval_91897 chr2 51087128 51088292 + 0 NA Intergenic Intergenic 61400 ENSMUSG00000017144.8 ENSMUSG00000017144 ENSMUST00000140864 Rnd3 protein_coding Interval_9454 chr1 157295974 157296145 + 0 NA intron (ENSMUSG00000070565.11, intron 2 of 2) protein_coding-intron (ENSMUSG00000070565.11, intron 2 of 17) 53984 ENSMUSG00000102326.1 ENSMUSG00000102326 ENSMUST00000193958 Gm37788 TEC Interval_174030 chrX 130549720 130549932 + 0 NA Intergenic Intergenic 12071 ENSMUSG00000083024.1 ENSMUSG00000083024 ENSMUST00000121102 Gm14982 processed_pseudogene Interval_132267 chr5 143755184 143755946 + 0 NA Intergenic Intergenic -8539 ENSMUSG00000097287.3 ENSMUSG00000097287 ENSMUST00000196629 D130017N08Rik lincRNA Interval_70706 chr17 13695026 13695395 + 0 NA intron (ENSMUSG00000117063.1, intron 1 of 4) lincRNA-intron (ENSMUSG00000117063.1, intron 1 of 4) -11723 ENSMUSG00000085705.1 ENSMUSG00000085705 ENSMUST00000128138 Gm16046 lincRNA Interval_68478 chr16 77814636 77815678 + 0 NA Intergenic Intergenic -31447 ENSMUSG00000091193.2 ENSMUSG00000091193 ENSMUST00000169531 Gm17333 lincRNA Interval_59331 chr15 51729917 51731307 + 0 NA Intergenic Intergenic -100977 ENSMUSG00000115563.1 ENSMUSG00000115563 ENSMUST00000227000 Gm34562 lincRNA Interval_22189 chr11 6997749 6998008 + 0 NA Intergenic Intergenic -135574 ENSMUSG00000082333.1 ENSMUSG00000082333 ENSMUST00000118142 Gm11984 processed_pseudogene Interval_39012 chr12 84450556 84451940 + 0 NA promoter-TSS (ENSMUSG00000021238.11) protein_coding-promoter-TSS (ENSMUSG00000021238.11) -300 ENSMUSG00000021238.11 ENSMUSG00000021238 ENSMUST00000222656 Aldh6a1 protein_coding Interval_123731 chr5 34988918 34990126 + 0 NA promoter-TSS (ENSMUSG00000029101.16) protein_coding-intron (ENSMUSG00000029101.16, intron 1 of 6) -24798 ENSMUSG00000029101.16 ENSMUSG00000029101 ENSMUST00000150139 Rgs12 protein_coding Interval_358 chr1 4516793 4517094 + 0 NA Intergenic Intergenic -5962 ENSMUSG00000102269.1 ENSMUSG00000102269 ENSMUST00000195361 Gm7357 processed_pseudogene Interval_147647 chr7 70591242 70591986 + 0 NA Intergenic Intergenic -1276 ENSMUSG00000109018.1 ENSMUSG00000109018 ENSMUST00000208305 Gm44809 TEC Interval_20102 chr10 114705026 114705267 + 0 NA intron (ENSMUSG00000050663.8, intron 2 of 18) protein_coding-intron (ENSMUSG00000050663.8, intron 2 of 18) -52601 ENSMUSG00000089934.1 ENSMUSG00000089934 ENSMUST00000161975 4930473D10Rik antisense Interval_28027 chr11 72342298 72344488 + 0 NA Intergenic Intergenic 3023 ENSMUSG00000088747.1 ENSMUSG00000088747 ENSMUST00000158122 Gm23224 misc_RNA Interval_145789 chr7 38281526 38282766 + 0 NA intron (ENSMUSG00000108749.1, intron 3 of 4) antisense-intron (ENSMUSG00000108749.1, intron 3 of 4) 10734 ENSMUSG00000108749.1 ENSMUSG00000108749 ENSMUST00000206634 Gm44767 antisense Interval_131602 chr5 138693096 138694977 + 0 NA Intergenic Intergenic -31359 ENSMUSG00000103298.1 ENSMUSG00000103298 ENSMUST00000193602 Gm38232 TEC Interval_120096 chr4 141790294 141791275 + 0 NA exon (ENSMUSG00000040697.10, exon 1 of 15) protein_coding-exon (ENSMUSG00000040697.10, exon 1 of 15) 147 ENSMUSG00000040697.10 ENSMUSG00000040697 ENSMUST00000153880 Dnajc16 protein_coding Interval_98056 chr2 147292513 147293883 + 0 NA intron (ENSMUSG00000086509.2, intron 3 of 5) antisense-intron (ENSMUSG00000086509.2, intron 3 of 5) 3443 ENSMUSG00000084371.1 ENSMUSG00000084371 ENSMUST00000121399 Gm14113 processed_pseudogene Interval_111948 chr4 32745073 32745541 + 0 NA intron (ENSMUSG00000058006.12, intron 74 of 101) protein_coding-intron (ENSMUSG00000058006.12, intron 74 of 101) -54972 ENSMUSG00000045854.4 ENSMUSG00000045854 ENSMUST00000130321 Lyrm2 protein_coding Interval_15068 chr10 42307751 42309313 + 0 NA Intergenic Intergenic -1243 ENSMUSG00000088165.1 ENSMUSG00000088165 ENSMUST00000157540 Gm23533 misc_RNA Interval_74251 chr17 47730181 47731433 + 0 NA intron (ENSMUSG00000023987.14, intron 3 of 3) protein_coding-intron (ENSMUSG00000023987.14, intron 5 of 8) 3963 ENSMUSG00000023987.14 ENSMUSG00000023987 ENSMUST00000144955 Pgc protein_coding Interval_89791 chr2 25456348 25456878 + 0 NA promoter-TSS (ENSMUSG00000015093.15) protein_coding-promoter-TSS (ENSMUSG00000015093.15) -1023 ENSMUSG00000015093.15 ENSMUSG00000015093 ENSMUST00000143862 Clic3 protein_coding Interval_94788 chr2 94311438 94311606 + 0 NA intron (ENSMUSG00000027194.16, intron 22 of 24) protein_coding-intron (ENSMUSG00000027194.16, intron 12 of 14) -46914 ENSMUSG00000075020.6 ENSMUSG00000075020 ENSMUST00000134563 Mir670hg lincRNA Interval_32430 chr11 107502639 107503728 + 0 NA intron (ENSMUSG00000020720.13, intron 10 of 10) protein_coding-intron (ENSMUSG00000020720.13, intron 10 of 10) 21267 ENSMUSG00000086442.1 ENSMUSG00000086442 ENSMUST00000138702 Gm11722 sense_intronic Interval_57555 chr15 12313156 12314005 + 0 NA Intergenic Intergenic -8055 ENSMUSG00000022200.8 ENSMUSG00000022200 ENSMUST00000228671 Golph3 protein_coding Interval_17028 chr10 70598439 70600247 + 0 NA promoter-TSS (ENSMUSG00000037747.9) protein_coding-promoter-TSS (ENSMUSG00000037747.9) -53 ENSMUSG00000037747.9 ENSMUSG00000037747 ENSMUST00000160127 Phyhipl protein_coding Interval_93317 chr2 71888351 71888654 + 0 NA intron (ENSMUSG00000006494.11, intron 7 of 7) protein_coding-intron (ENSMUSG00000006494.11, intron 7 of 10) 15156 ENSMUSG00000006494.11 ENSMUSG00000006494 ENSMUST00000129427 Pdk1 protein_coding Interval_77221 chr17 87438192 87439005 + 0 NA intron (ENSMUSG00000036438.14, intron 1 of 4) protein_coding-intron (ENSMUSG00000036438.14, intron 2 of 5) 8337 ENSMUSG00000036438.14 ENSMUSG00000036438 ENSMUST00000238271 Calm2 protein_coding Interval_49924 chr13 118349801 118350745 + 0 NA Intergenic Intergenic -36357 ENSMUSG00000097411.2 ENSMUSG00000097411 ENSMUST00000181168 B430218F22Rik antisense Interval_61389 chr15 81289974 81290706 + 0 NA intron (ENSMUSG00000115970.1, intron 1 of 3) lincRNA-intron (ENSMUSG00000115970.1, intron 1 of 3) -38478 ENSMUSG00000115970.1 ENSMUSG00000115970 ENSMUST00000230042 8430426J06Rik lincRNA Interval_132910 chr5 148701159 148702589 + 0 NA Intergenic Intergenic -9592 ENSMUSG00000106733.1 ENSMUSG00000106733 ENSMUST00000200820 Gm36186 lincRNA Interval_67600 chr16 52097498 52097748 + 0 NA intron (ENSMUSG00000022637.11, intron 1 of 16) protein_coding-intron (ENSMUSG00000022637.11, intron 3 of 17) 7524 ENSMUSG00000095977.1 ENSMUSG00000095977 ENSMUST00000158181 Gm23513 snoRNA Interval_63213 chr15 99771626 99772997 + 0 NA promoter-TSS (ENSMUSG00000023021.15) protein_coding-promoter-TSS (ENSMUSG00000023021.15) 6320 ENSMUSG00000090406.1 ENSMUSG00000090406 ENSMUST00000168951 Gm17058 antisense Interval_71595 chr17 24752445 24754756 + 0 NA intron (ENSMUSG00000039628.9, intron 1 of 2) protein_coding-intron (ENSMUSG00000039628.9, intron 1 of 1) 584 ENSMUSG00000039628.9 ENSMUSG00000039628 ENSMUST00000234202 Hs3st6 protein_coding Interval_45718 chr13 57259353 57260201 + 0 NA Intergenic Intergenic -16901 ENSMUSG00000114411.1 ENSMUSG00000114411 ENSMUST00000224461 Gm48176 processed_pseudogene Interval_124917 chr5 60576997 60577552 + 0 NA Intergenic Intergenic -1356 ENSMUSG00000106548.1 ENSMUSG00000106548 ENSMUST00000196614 Gm43390 processed_pseudogene Interval_61900 chr15 85033848 85034279 + 0 NA intron (ENSMUSG00000022434.8, intron 1 of 2) protein_coding-intron (ENSMUSG00000022434.8, intron 1 of 2) -3124 ENSMUSG00000022434.8 ENSMUSG00000022434 ENSMUST00000229691 Fam118a protein_coding Interval_145356 chr7 34195752 34197113 + 0 NA promoter-TSS (ENSMUSG00000002635.11) protein_coding-promoter-TSS (ENSMUSG00000002635.11) -3651 ENSMUSG00000002635.11 ENSMUSG00000002635 ENSMUST00000125803 Pdcd2l protein_coding Interval_40132 chr12 101853810 101854957 + 0 NA intron (ENSMUSG00000021188.14, intron 10 of 14) protein_coding-intron (ENSMUSG00000021188.14, intron 16 of 20) -12566 ENSMUSG00000093758.1 ENSMUSG00000093758 ENSMUST00000176082 Gm20701 processed_pseudogene Interval_98114 chr2 148211494 148211873 + 0 NA Intergenic Intergenic 60533 ENSMUSG00000089458.1 ENSMUSG00000089458 ENSMUST00000158833 Gm24221 snoRNA Interval_44629 chr13 46803761 46804149 + 0 NA intron (ENSMUSG00000021375.11, intron 16 of 25) protein_coding-intron (ENSMUSG00000021375.11, intron 16 of 37) 5102 ENSMUSG00000021375.11 ENSMUSG00000021375 ENSMUST00000224923 Kif13a protein_coding Interval_23585 chr11 23576109 23576749 + 0 NA TTS (ENSMUSG00000042208.15) protein_coding-TTS (ENSMUSG00000042208.15) -17587 ENSMUSG00000085415.1 ENSMUSG00000085415 ENSMUST00000125204 Selenok-ps1 processed_transcript Interval_38969 chr12 84188892 84189210 + 0 NA intron (ENSMUSG00000042507.15, intron 1 of 12) protein_coding-intron (ENSMUSG00000042507.15, intron 1 of 12) -1245 ENSMUSG00000113776.1 ENSMUSG00000113776 ENSMUST00000220651 Gm19327 TEC Interval_57985 chr15 25855605 25855870 + 0 NA intron (ENSMUSG00000022270.16, intron 1 of 8) protein_coding-intron (ENSMUSG00000022270.16, intron 1 of 8) -15126 ENSMUSG00000115593.1 ENSMUSG00000115593 ENSMUST00000228649 Gm4824 processed_pseudogene Interval_97516 chr2 138337708 138338700 + 0 NA intron (ENSMUSG00000062098.11, intron 1 of 3) protein_coding-intron (ENSMUSG00000062098.11, intron 1 of 5) 81542 ENSMUSG00000062098.11 ENSMUSG00000062098 ENSMUST00000075410 Btbd3 protein_coding Interval_133532 chr6 6183300 6184173 + 0 NA intron (ENSMUSG00000015112.15, intron 2 of 17) protein_coding-intron (ENSMUSG00000015112.15, intron 2 of 17) -9785 ENSMUSG00000015112.15 ENSMUSG00000015112 ENSMUST00000177698 Slc25a13 protein_coding Interval_161675 chr8 121947575 121948222 + 0 NA promoter-TSS (ENSMUSG00000103904.1) TEC-promoter-TSS (ENSMUSG00000103904.1) -51 ENSMUSG00000103904.1 ENSMUSG00000103904 ENSMUST00000195830 Gm37497 TEC Interval_90519 chr2 30917920 30920366 + 0 NA intron (ENSMUSG00000050737.13, intron 1 of 2) protein_coding-intron (ENSMUSG00000050737.13, intron 1 of 2) 5214 ENSMUSG00000084143.1 ENSMUSG00000084143 ENSMUST00000117436 Gm13400 processed_pseudogene Interval_77426 chr17 88619844 88620239 + 0 NA intron (ENSMUSG00000033855.15, intron 1 of 2) protein_coding-intron (ENSMUSG00000033855.15, intron 1 of 1) -6514 ENSMUSG00000033855.15 ENSMUSG00000033855 ENSMUST00000112216 Ston1 protein_coding Interval_51720 chr14 31621377 31621691 + 0 NA intron (ENSMUSG00000115022.1, intron 7 of 15) protein_coding-intron (ENSMUSG00000021884.18, intron 9 of 16) 19344 ENSMUSG00000115022.1 ENSMUSG00000115022 ENSMUST00000167175 Gm49387 protein_coding Interval_4347 chr1 72853795 72855186 + 0 NA Intergenic Intergenic 5791 ENSMUSG00000039323.18 ENSMUSG00000039323 ENSMUST00000155703 Igfbp2 protein_coding Interval_160822 chr8 112810490 112810714 + 0 NA exon (ENSMUSG00000031772.17, exon 14 of 24) protein_coding-exon (ENSMUSG00000031772.17, exon 14 of 24) 36948 ENSMUSG00000031772.17 ENSMUSG00000031772 ENSMUST00000140753 Cntnap4 protein_coding Interval_148142 chr7 79458839 79459454 + 0 NA TTS (ENSMUSG00000039176.17) protein_coding-TTS (ENSMUSG00000039176.17) -7224 ENSMUSG00000039176.17 ENSMUSG00000039176 ENSMUST00000125562 Polg protein_coding Interval_59910 chr15 61640055 61640973 + 0 NA intron (ENSMUSG00000116031.1, intron 4 of 4) lincRNA-intron (ENSMUSG00000116031.1, intron 4 of 4) -96331 ENSMUSG00000116109.1 ENSMUSG00000116109 ENSMUST00000229194 Gm49498 lincRNA Interval_161048 chr8 117148370 117149228 + 0 NA Intergenic Intergenic -9338 ENSMUSG00000052557.11 ENSMUSG00000052557 ENSMUST00000162997 Gan protein_coding Interval_96941 chr2 129743101 129743509 + 0 NA Intergenic Intergenic -6596 ENSMUSG00000084328.1 ENSMUSG00000084328 ENSMUST00000119389 Gm14046 processed_pseudogene Interval_173879 chrX 106837765 106838245 + 0 NA exon (ENSMUSG00000047686.9, exon 2 of 2) protein_coding-exon (ENSMUSG00000047686.9, exon 2 of 2) 2639 ENSMUSG00000047686.9 ENSMUSG00000047686 ENSMUST00000062010 Rtl3 protein_coding Interval_4507 chr1 74681346 74681763 + 0 NA intron (ENSMUSG00000033257.14, intron 5 of 6) protein_coding-intron (ENSMUSG00000033257.14, intron 4 of 19) -7869 ENSMUSG00000033257.14 ENSMUSG00000033257 ENSMUST00000143790 Ttll4 protein_coding Interval_104747 chr3 70150338 70151766 + 0 NA Intergenic Intergenic -34520 ENSMUSG00000103113.1 ENSMUSG00000103113 ENSMUST00000195440 Gm37585 processed_pseudogene Interval_57444 chr15 10999972 11001257 + 0 NA promoter-TSS (ENSMUSG00000022243.10) protein_coding-promoter-TSS (ENSMUSG00000022243.10) -107 ENSMUSG00000022243.10 ENSMUSG00000022243 ENSMUST00000117100 Slc45a2 protein_coding Interval_166788 chr9 62712331 62712550 + 0 NA intron (ENSMUSG00000032243.8, intron 2 of 27) protein_coding-intron (ENSMUSG00000032243.8, intron 2 of 29) 34580 ENSMUSG00000032243.8 ENSMUSG00000032243 ENSMUST00000159012 Itga11 protein_coding Interval_88658 chr2 9042114 9042919 + 0 NA promoter-TSS (ENSMUSG00000082953.3) unprocessed_pseudogene-promoter-TSS (ENSMUSG00000082953.3) -32 ENSMUSG00000082953.3 ENSMUSG00000082953 ENSMUST00000120466 Gm13217 unprocessed_pseudogene Interval_57197 chr15 7397505 7399270 + 0 NA promoter-TSS (ENSMUSG00000042961.13) protein_coding-promoter-TSS (ENSMUSG00000042961.13) 490 ENSMUSG00000090199.1 ENSMUSG00000090199 ENSMUST00000161643 Gm16029 antisense Interval_30993 chr11 97622350 97622699 + 0 NA intron (ENSMUSG00000085860.1, intron 3 of 3) processed_transcript-intron (ENSMUSG00000085860.1, intron 3 of 3) 7178 ENSMUSG00000043439.5 ENSMUSG00000043439 ENSMUST00000052281 Epop protein_coding Interval_36325 chr12 41225680 41226483 + 0 NA intron (ENSMUSG00000056899.10, intron 3 of 5) protein_coding-intron (ENSMUSG00000056899.10, intron 4 of 6) 122009 ENSMUSG00000113086.1 ENSMUSG00000113086 ENSMUST00000223331 Gm47376 antisense Interval_26198 chr11 55032338 55034020 + 0 NA intron (ENSMUSG00000018340.13, intron 1 of 19) protein_coding-intron (ENSMUSG00000018340.13, intron 1 of 24) 236 ENSMUSG00000018340.13 ENSMUSG00000018340 ENSMUST00000148298 Anxa6 protein_coding Interval_161327 chr8 119765477 119766606 + 0 NA intron (ENSMUSG00000034105.9, intron 5 of 7) protein_coding-intron (ENSMUSG00000034105.9, intron 5 of 7) 12353 ENSMUSG00000034105.9 ENSMUSG00000034105 ENSMUST00000212534 Meak7 protein_coding Interval_112200 chr4 35584456 35584926 + 0 NA Intergenic Intergenic 148477 ENSMUSG00000083851.1 ENSMUSG00000083851 ENSMUST00000117931 Gm12365 processed_pseudogene Interval_107988 chr3 119040210 119040583 + 0 NA intron (ENSMUSG00000033308.16, intron 13 of 22) protein_coding-intron (ENSMUSG00000033308.16, intron 13 of 22) 172152 ENSMUSG00000106542.1 ENSMUSG00000106542 ENSMUST00000197510 Gm43410 TEC Interval_128885 chr5 115880482 115880727 + 0 NA intron (ENSMUSG00000029516.19, intron 7 of 10) protein_coding-intron (ENSMUSG00000029516.19, intron 6 of 46) -5814 ENSMUSG00000029516.19 ENSMUSG00000029516 ENSMUST00000134609 Cit protein_coding Interval_15129 chr10 42729866 42730573 + 0 NA Intergenic Intergenic 28441 ENSMUSG00000086428.1 ENSMUSG00000086428 ENSMUST00000129933 Gm15199 antisense Interval_12933 chr10 8278253 8278862 + 0 NA intron (ENSMUSG00000047712.8, intron 2 of 6) protein_coding-intron (ENSMUSG00000047712.8, intron 5 of 7) 23685 ENSMUSG00000047712.8 ENSMUSG00000047712 ENSMUST00000061601 Ust protein_coding Interval_48616 chr13 100680289 100680748 + 0 NA intron (ENSMUSG00000048924.14, intron 3 of 9) protein_coding-intron (ENSMUSG00000048924.14, intron 3 of 11) 10801 ENSMUSG00000048924.14 ENSMUSG00000048924 ENSMUST00000057325 Ccdc125 protein_coding Interval_23672 chr11 24286009 24286986 + 0 NA Intergenic Intergenic -83873 ENSMUSG00000086117.1 ENSMUSG00000086117 ENSMUST00000149592 Gm12065 lincRNA Interval_125029 chr5 63959186 63959694 + 0 NA intron (ENSMUSG00000047881.14, intron 1 of 7) protein_coding-intron (ENSMUSG00000047881.14, intron 1 of 7) -28526 ENSMUSG00000047881.14 ENSMUSG00000047881 ENSMUST00000127314 Rell1 protein_coding Interval_143052 chr6 148929464 148929758 + 0 NA intron (ENSMUSG00000039985.14, intron 2 of 3) protein_coding-intron (ENSMUSG00000039985.14, intron 3 of 5) -9076 ENSMUSG00000108258.1 ENSMUSG00000108258 ENSMUST00000203924 Gm43913 lincRNA Interval_134627 chr6 30034959 30035158 + 0 NA Intergenic Intergenic 46670 ENSMUSG00000095989.1 ENSMUSG00000095989 ENSMUST00000178068 Gm23049 miRNA Interval_43844 chr13 37532246 37533253 + 0 NA Intergenic Intergenic -15029 ENSMUSG00000114665.1 ENSMUSG00000114665 ENSMUST00000225390 Lncbate6 lincRNA Interval_148423 chr7 81160864 81162862 + 0 NA promoter-TSS (ENSMUSG00000083820.1) processed_pseudogene-promoter-TSS (ENSMUSG00000083820.1) -119 ENSMUSG00000083820.1 ENSMUSG00000083820 ENSMUST00000118488 Ndufs6b processed_pseudogene Interval_68684 chr16 84726349 84726558 + 0 NA intron (ENSMUSG00000022889.7, intron 6 of 9) protein_coding-intron (ENSMUSG00000022889.7, intron 6 of 9) 8777 ENSMUSG00000022889.7 ENSMUSG00000022889 ENSMUST00000133901 Mrpl39 protein_coding Interval_60424 chr15 73662386 73662969 + 0 NA Intergenic Intergenic 16825 ENSMUSG00000099958.1 ENSMUSG00000099958 ENSMUST00000188278 1700010B13Rik processed_transcript Interval_53548 chr14 58937824 58939289 + 0 NA intron (ENSMUSG00000114486.1, intron 2 of 2) lincRNA-intron (ENSMUSG00000114486.1, intron 2 of 2) 26452 ENSMUSG00000114486.1 ENSMUSG00000114486 ENSMUST00000224187 Gm48447 lincRNA Interval_145373 chr7 34290394 34290670 + 0 NA intron (ENSMUSG00000066571.13, intron 1 of 1) protein_coding-intron (ENSMUSG00000066571.13, intron 1 of 13) 22990 ENSMUSG00000066571.13 ENSMUSG00000066571 ENSMUST00000205618 4931406P16Rik protein_coding Interval_94998 chr2 102869008 102869231 + 0 NA intron (ENSMUSG00000005087.17, intron 1 of 4) protein_coding-intron (ENSMUSG00000005087.17, intron 1 of 18) -28841 ENSMUSG00000065683.1 ENSMUSG00000065683 ENSMUST00000083749 Gm23731 snRNA Interval_119311 chr4 136804645 136805590 + 0 NA intron (ENSMUSG00000028664.14, intron 1 of 2) protein_coding-intron (ENSMUSG00000028664.14, intron 1 of 15) 81070 ENSMUSG00000036905.8 ENSMUSG00000036905 ENSMUST00000046384 C1qb protein_coding Interval_130338 chr5 126079250 126079842 + 0 NA Intergenic Intergenic -53073 ENSMUSG00000105189.1 ENSMUSG00000105189 ENSMUST00000200064 Gm7774 processed_pseudogene Interval_98244 chr2 150356569 150356959 + 0 NA intron (ENSMUSG00000063364.10, intron 1 of 2) protein_coding-intron (ENSMUSG00000063364.10, intron 1 of 3) 5978 ENSMUSG00000063364.10 ENSMUSG00000063364 ENSMUST00000138130 3300002I08Rik protein_coding Interval_138210 chr6 86322696 86323691 + 0 NA Intergenic Intergenic -10838 ENSMUSG00000072940.5 ENSMUSG00000072940 ENSMUST00000119024 Gm10443 processed_pseudogene Interval_63582 chr15 102177907 102180358 + 0 NA promoter-TSS (ENSMUSG00000023044.2) protein_coding-promoter-TSS (ENSMUSG00000023044.2) 9542 ENSMUSG00000023044.2 ENSMUSG00000023044 ENSMUST00000230328 Csad protein_coding Interval_71195 chr17 21065188 21066015 + 0 NA Intergenic Intergenic -4825 ENSMUSG00000101511.1 ENSMUSG00000101511 ENSMUST00000189217 Gm5681 unprocessed_pseudogene Interval_68798 chr16 86940505 86941080 + 0 NA Intergenic Intergenic 95322 ENSMUSG00000089252.1 ENSMUSG00000089252 ENSMUST00000158627 Gm25715 snoRNA Interval_25249 chr11 45885690 45886910 + 0 NA intron (ENSMUSG00000006169.20, intron 2 of 7) protein_coding-intron (ENSMUSG00000006169.20, intron 3 of 11) 3903 ENSMUSG00000006169.20 ENSMUSG00000006169 ENSMUST00000133715 Clint1 protein_coding Interval_128900 chr5 115956244 115957408 + 0 NA intron (ENSMUSG00000029516.19, intron 13 of 37) protein_coding-intron (ENSMUSG00000029516.19, intron 22 of 46) -52490 ENSMUSG00000085376.1 ENSMUSG00000085376 ENSMUST00000127049 Gm14508 antisense Interval_93108 chr2 70284203 70284440 + 0 NA intron (ENSMUSG00000042064.13, intron 23 of 33) protein_coding-intron (ENSMUSG00000042064.13, intron 24 of 34) -174661 ENSMUSG00000047965.9 ENSMUSG00000047965 ENSMUST00000140507 Rpl9-ps7 processed_pseudogene Interval_44750 chr13 48231356 48231820 + 0 NA intron (ENSMUSG00000114457.1, intron 1 of 3) antisense-intron (ENSMUSG00000097622.2, intron 1 of 2) 5663 ENSMUSG00000114457.1 ENSMUSG00000114457 ENSMUST00000225626 Gm36346 lincRNA Interval_86897 chr19 44696247 44697078 + 0 NA Intergenic Intergenic -1202 ENSMUSG00000097683.2 ENSMUSG00000097683 ENSMUST00000181365 Gm26644 lincRNA Interval_76331 chr17 79133718 79136068 + 0 NA Intergenic Intergenic -31149 ENSMUSG00000117054.1 ENSMUSG00000117054 ENSMUST00000232888 Gm49869 processed_pseudogene Interval_114392 chr4 74864321 74864800 + 0 NA Intergenic Intergenic -175236 ENSMUSG00000083659.1 ENSMUSG00000083659 ENSMUST00000121086 Gm11258 processed_pseudogene Interval_153930 chr8 11278629 11279980 + 0 NA intron (ENSMUSG00000031502.11, intron 1 of 52) protein_coding-intron (ENSMUSG00000031502.11, intron 1 of 51) 11963 ENSMUSG00000109358.1 ENSMUSG00000109358 ENSMUST00000209007 Gm44716 TEC Interval_61603 chr15 82911372 82912480 + 0 NA intron (ENSMUSG00000041852.15, intron 1 of 1) protein_coding-intron (ENSMUSG00000041852.15, intron 1 of 4) -12115 ENSMUSG00000041852.15 ENSMUSG00000041852 ENSMUST00000229439 Tcf20 protein_coding Interval_169903 chr9 102843496 102844032 + 0 NA intron (ENSMUSG00000032547.12, intron 1 of 13) protein_coding-intron (ENSMUSG00000032547.12, intron 1 of 14) -8071 ENSMUSG00000110877.1 ENSMUSG00000110877 ENSMUST00000214076 Gm47427 TEC Interval_17620 chr10 78251203 78251466 + 0 NA intron (ENSMUSG00000112433.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000112433.1, intron 1 of 1) 4777 ENSMUSG00000112433.1 ENSMUSG00000112433 ENSMUST00000218143 Gm30122 lincRNA Interval_124562 chr5 50832734 50832915 + 0 NA Intergenic Intergenic -5493 ENSMUSG00000105931.1 ENSMUSG00000105931 ENSMUST00000198568 Gm43014 TEC Interval_112551 chr4 43052341 43052974 + 0 NA intron (ENSMUSG00000096974.2, intron 2 of 2) antisense-intron (ENSMUSG00000096974.2, intron 2 of 3) 6615 ENSMUSG00000096974.2 ENSMUSG00000096974 ENSMUST00000211208 Gm26881 antisense Interval_147919 chr7 75553482 75554254 + 0 NA intron (ENSMUSG00000066406.16, intron 2 of 5) protein_coding-intron (ENSMUSG00000066406.16, intron 2 of 36) -6746 ENSMUSG00000108557.1 ENSMUSG00000108557 ENSMUST00000205544 Gm44835 TEC Interval_157724 chr8 72532302 72532543 + 0 NA intron (ENSMUSG00000045248.6, intron 1 of 2) protein_coding-intron (ENSMUSG00000045248.6, intron 1 of 2) 1391 ENSMUSG00000110532.1 ENSMUSG00000110532 ENSMUST00000212739 Gm35857 processed_pseudogene Interval_84626 chr19 14506964 14507216 + 0 NA intron (ENSMUSG00000024642.17, intron 7 of 19) protein_coding-intron (ENSMUSG00000024642.17, intron 8 of 19) 88449 ENSMUSG00000024642.17 ENSMUSG00000024642 ENSMUST00000235975 Tle4 protein_coding Interval_8205 chr1 136487654 136488731 + 0 NA intron (ENSMUSG00000041498.13, intron 13 of 14) protein_coding-intron (ENSMUSG00000041498.13, intron 13 of 29) -19217 ENSMUSG00000099337.1 ENSMUSG00000099337 ENSMUST00000088648 Gm29486 processed_pseudogene Interval_91067 chr2 34794286 34794819 + 0 NA intron (ENSMUSG00000070953.13, intron 2 of 4) protein_coding-intron (ENSMUSG00000070953.13, intron 1 of 5) 5360 ENSMUSG00000070953.13 ENSMUSG00000070953 ENSMUST00000144113 Rabepk protein_coding Interval_93461 chr2 73248819 73249258 + 0 NA Intergenic Intergenic -22928 ENSMUSG00000068859.5 ENSMUSG00000068859 ENSMUST00000147133 Sp9 protein_coding Interval_36382 chr12 42932415 42933255 + 0 NA Intergenic Intergenic 82624 ENSMUSG00000112407.1 ENSMUSG00000112407 ENSMUST00000219475 Gm33340 lincRNA Interval_159359 chr8 94055225 94055622 + 0 NA intron (ENSMUSG00000033009.15, intron 6 of 6) protein_coding-intron (ENSMUSG00000033009.15, intron 6 of 12) 6642 ENSMUSG00000110499.1 ENSMUSG00000110499 ENSMUST00000211865 Gm45873 TEC Interval_59580 chr15 55563810 55564340 + 0 NA intron (ENSMUSG00000022369.13, intron 4 of 16) protein_coding-intron (ENSMUSG00000022369.13, intron 4 of 21) -6327 ENSMUSG00000022370.13 ENSMUSG00000022370 ENSMUST00000170135 Mrpl13 protein_coding Interval_165146 chr9 44817883 44818703 + 0 NA exon (ENSMUSG00000002028.13, exon 27 of 36) protein_coding-exon (ENSMUSG00000002028.13, exon 27 of 36) -16481 ENSMUSG00000039438.7 ENSMUSG00000039438 ENSMUST00000216449 Ttc36 protein_coding Interval_95575 chr2 112433670 112434089 + 0 NA Intergenic Intergenic -21118 ENSMUSG00000055943.5 ENSMUSG00000055943 ENSMUST00000069747 Emc7 protein_coding Interval_132324 chr5 144189628 144191671 + 0 NA intron (ENSMUSG00000052271.7, intron 1 of 1) protein_coding-intron (ENSMUSG00000052271.7, intron 1 of 1) 363 ENSMUSG00000052271.7 ENSMUSG00000052271 ENSMUST00000060747 Bhlha15 protein_coding Interval_79362 chr18 31208815 31209107 + 0 NA intron (ENSMUSG00000057455.12, intron 3 of 3) protein_coding-intron (ENSMUSG00000057455.12, intron 2 of 3) 3771 ENSMUSG00000057455.12 ENSMUSG00000057455 ENSMUST00000139924 Rit2 protein_coding Interval_120618 chr4 149719855 149720377 + 0 NA intron (ENSMUSG00000044700.15, intron 7 of 10) protein_coding-intron (ENSMUSG00000044700.15, intron 7 of 9) 17654 ENSMUSG00000044700.15 ENSMUSG00000044700 ENSMUST00000145405 Tmem201 protein_coding Interval_21016 chr10 123335644 123335830 + 0 NA intron (ENSMUSG00000044071.9, intron 1 of 4) protein_coding-intron (ENSMUSG00000044071.9, intron 1 of 5) 71661 ENSMUSG00000044071.9 ENSMUSG00000044071 ENSMUST00000219723 Tafa2 protein_coding Interval_11942 chr1 187360404 187360593 + 0 NA intron (ENSMUSG00000104245.1, intron 1 of 1) antisense-intron (ENSMUSG00000104245.1, intron 1 of 1) 16971 ENSMUSG00000104245.1 ENSMUSG00000104245 ENSMUST00000192285 Gm38155 antisense Interval_21996 chr11 5684414 5685101 + 0 NA intron (ENSMUSG00000020481.15, intron 25 of 26) protein_coding-intron (ENSMUSG00000020481.15, intron 25 of 26) -6125 ENSMUSG00000081691.1 ENSMUSG00000081691 ENSMUST00000122017 Gm11965 processed_pseudogene Interval_60441 chr15 73767129 73767415 + 0 NA intron (ENSMUSG00000072487.11, intron 21 of 29) protein_coding-intron (ENSMUSG00000072487.11, intron 21 of 25) 19554 ENSMUSG00000059895.13 ENSMUSG00000059895 ENSMUST00000053232 Ptp4a3 protein_coding Interval_45383 chr13 54794457 54795232 + 0 NA promoter-TSS (ENSMUSG00000025875.14) protein_coding-promoter-TSS (ENSMUSG00000025875.14) 5199 ENSMUSG00000025875.14 ENSMUSG00000025875 ENSMUST00000139574 Tspan17 protein_coding Interval_17661 chr10 78624485 78624851 + 0 NA Intergenic Intergenic -4886 ENSMUSG00000112674.1 ENSMUSG00000112674 ENSMUST00000219154 Gm47459 lincRNA Interval_130805 chr5 130806954 130807172 + 0 NA intron (ENSMUSG00000060371.12, intron 4 of 5) protein_coding-intron (ENSMUSG00000060371.12, intron 5 of 6) 24362 ENSMUSG00000088972.2 ENSMUSG00000088972 ENSMUST00000158347 Gm23761 snRNA Interval_105485 chr3 86954605 86955649 + 0 NA Intergenic Intergenic -21464 ENSMUSG00000103650.1 ENSMUSG00000103650 ENSMUST00000194284 Gm37207 processed_pseudogene Interval_96852 chr2 128926384 128926617 + 0 NA promoter-TSS (ENSMUSG00000092719.1) miRNA-promoter-TSS (ENSMUSG00000092719.1) -808 ENSMUSG00000092719.1 ENSMUSG00000092719 ENSMUST00000174978 Gm22859 miRNA Interval_110497 chr3 159724040 159725304 + 0 NA Intergenic Intergenic -115067 ENSMUSG00000028173.10 ENSMUSG00000028173 ENSMUST00000196782 Wls protein_coding Interval_60777 chr15 76683188 76684414 + 0 NA intron (ENSMUSG00000033819.16, intron 1 of 10) protein_coding-intron (ENSMUSG00000033819.16, intron 1 of 10) -7647 ENSMUSG00000033819.16 ENSMUSG00000033819 ENSMUST00000140730 Ppp1r16a protein_coding Interval_10870 chr1 176409999 176410222 + 0 NA Intergenic Intergenic -36390 ENSMUSG00000104248.1 ENSMUSG00000104248 ENSMUST00000195389 Gm38152 TEC Interval_88897 chr2 12327091 12328602 + 0 NA Intergenic Intergenic -25954 ENSMUSG00000026768.10 ENSMUSG00000026768 ENSMUST00000130548 Itga8 protein_coding Interval_122456 chr5 22997620 22998573 + 0 NA intron (ENSMUSG00000106379.1, intron 1 of 3) protein_coding-intron (ENSMUSG00000106379.1, intron 1 of 3) -66083 ENSMUSG00000060879.3 ENSMUSG00000060879 ENSMUST00000075377 Gm6564 processed_pseudogene Interval_109183 chr3 137746684 137746973 + 0 NA Intergenic Intergenic 31170 ENSMUSG00000064460.1 ENSMUSG00000064460 ENSMUST00000082526 Gm25080 snRNA Interval_101571 chr3 6800149 6800501 + 0 NA Intergenic Intergenic -48253 ENSMUSG00000103538.3 ENSMUSG00000103538 ENSMUST00000192834 Olfr289-ps1 unprocessed_pseudogene Interval_33909 chr11 119355107 119356257 + 0 NA promoter-TSS (ENSMUSG00000005043.13) protein_coding-promoter-TSS (ENSMUSG00000005043.13) -2983 ENSMUSG00000005043.13 ENSMUSG00000005043 ENSMUST00000141540 Sgsh protein_coding Interval_153859 chr8 10006729 10007870 + 0 NA exon (ENSMUSG00000031497.9, exon 2 of 6) protein_coding-exon (ENSMUSG00000031497.9, exon 2 of 6) 12228 ENSMUSG00000109054.1 ENSMUSG00000109054 ENSMUST00000207195 Gm44789 TEC Interval_118745 chr4 133491687 133492138 + 0 NA intron (ENSMUSG00000056596.8, intron 1 of 1) protein_coding-intron (ENSMUSG00000056596.8, intron 1 of 2) 6638 ENSMUSG00000056596.8 ENSMUSG00000056596 ENSMUST00000123169 Trnp1 protein_coding Interval_128507 chr5 113712402 113713513 + 0 NA intron (ENSMUSG00000042184.11, intron 2 of 2) protein_coding-intron (ENSMUSG00000042184.11, intron 2 of 2) 11815 ENSMUSG00000042184.11 ENSMUSG00000042184 ENSMUST00000047891 1700069L16Rik protein_coding Interval_18949 chr10 93316576 93317729 + 0 NA promoter-TSS (ENSMUSG00000111531.1) lincRNA-promoter-TSS (ENSMUSG00000111531.1) -251 ENSMUSG00000111531.1 ENSMUSG00000111531 ENSMUST00000213849 Gm32688 lincRNA Interval_87029 chr19 45678712 45678959 + 0 NA Intergenic Intergenic 64080 ENSMUSG00000025219.13 ENSMUSG00000025219 ENSMUST00000111925 Fgf8 protein_coding Interval_111098 chr4 12023274 12024079 + 0 NA Intergenic Intergenic -3829 ENSMUSG00000085467.1 ENSMUSG00000085467 ENSMUST00000130117 Gm11842 antisense Interval_50070 chr14 7800807 7801207 + 0 NA promoter-TSS (ENSMUSG00000049460.7) processed_pseudogene-promoter-TSS (ENSMUSG00000049460.7) -201 ENSMUSG00000049460.7 ENSMUSG00000049460 ENSMUST00000057361 Gm8396 processed_pseudogene Interval_91946 chr2 51930456 51930993 + 0 NA intron (ENSMUSG00000036249.16, intron 2 of 4) protein_coding-intron (ENSMUSG00000036249.16, intron 2 of 4) 3920 ENSMUSG00000036249.16 ENSMUSG00000036249 ENSMUST00000132703 Rbm43 protein_coding Interval_86037 chr19 35234221 35235164 + 0 NA Intergenic Intergenic 31457 ENSMUSG00000089087.1 ENSMUSG00000089087 ENSMUST00000158462 Gm24006 snoRNA Interval_68390 chr16 75592704 75593932 + 0 NA intron (ENSMUSG00000032940.16, intron 1 of 4) protein_coding-intron (ENSMUSG00000032940.16, intron 1 of 5) 427 ENSMUSG00000032940.16 ENSMUSG00000032940 ENSMUST00000114253 Rbm11 protein_coding Interval_121589 chr5 3670196 3670425 + 0 NA intron (ENSMUSG00000014529.9, intron 7 of 7) protein_coding-intron (ENSMUSG00000014529.9, intron 8 of 10) -13125 ENSMUSG00000007415.15 ENSMUSG00000007415 ENSMUST00000119783 Gatad1 protein_coding Interval_81071 chr18 53576732 53577195 + 0 NA Intergenic Intergenic -62143 ENSMUSG00000118362.1 ENSMUSG00000118362 ENSMUST00000235670 Gm19466 lincRNA Interval_12310 chr1 191604821 191605041 + 0 NA exon (ENSMUSG00000037461.10, exon 9 of 20) protein_coding-exon (ENSMUSG00000037461.10, exon 9 of 20) 7284 ENSMUSG00000102970.1 ENSMUSG00000102970 ENSMUST00000194205 Gm37349 TEC Interval_159507 chr8 95146610 95146920 + 0 NA intron (ENSMUSG00000110475.1, intron 3 of 3) protein_coding-intron (ENSMUSG00000031788.14, intron 1 of 4) 8455 ENSMUSG00000110475.1 ENSMUSG00000110475 ENSMUST00000212925 Gm31036 antisense Interval_72776 chr17 32099580 32100875 + 0 NA promoter-TSS (ENSMUSG00000002791.17) transcribed_unprocessed_pseudogene-promoter-TSS (ENSMUSG00000002791.17) -9972 ENSMUSG00000002791.17 ENSMUSG00000002791 ENSMUST00000235497 Pdxk-ps transcribed_unprocessed_pseudogene Interval_150717 chr7 113749924 113750544 + 0 NA intron (ENSMUSG00000101755.1, intron 3 of 3) lincRNA-intron (ENSMUSG00000101755.1, intron 3 of 3) -15940 ENSMUSG00000038156.16 ENSMUSG00000038156 ENSMUST00000084696 Spon1 protein_coding Interval_105113 chr3 81587953 81588218 + 0 NA Intergenic Intergenic -31260 ENSMUSG00000102710.1 ENSMUSG00000102710 ENSMUST00000192718 Gm4857 processed_pseudogene Interval_155321 chr8 31227918 31228770 + 0 NA intron (ENSMUSG00000046152.16, intron 2 of 2) protein_coding-intron (ENSMUSG00000046152.16, intron 3 of 4) -12993 ENSMUSG00000083588.1 ENSMUSG00000083588 ENSMUST00000120464 Gm8051 processed_pseudogene Interval_127605 chr5 105737308 105738239 + 0 NA intron (ENSMUSG00000046079.16, intron 1 of 2) protein_coding-intron (ENSMUSG00000046079.16, intron 2 of 2) 6384 ENSMUSG00000046079.16 ENSMUSG00000046079 ENSMUST00000134605 Lrrc8d protein_coding Interval_87931 chr19 57180580 57181724 + 0 NA intron (ENSMUSG00000025085.16, intron 1 of 20) protein_coding-intron (ENSMUSG00000025085.16, intron 1 of 25) -92808 ENSMUSG00000117684.1 ENSMUSG00000117684 ENSMUST00000237596 4930449E18Rik antisense Interval_66011 chr16 30939433 30940974 + 0 NA Intergenic Intergenic -4574 ENSMUSG00000116581.1 ENSMUSG00000116581 ENSMUST00000232539 Gm46565 lincRNA Interval_157240 chr8 68326285 68327332 + 0 NA intron (ENSMUSG00000053886.4, intron 3 of 7) protein_coding-intron (ENSMUSG00000053886.4, intron 4 of 8) -8728 ENSMUSG00000110650.1 ENSMUSG00000110650 ENSMUST00000212440 Gm19170 processed_pseudogene Interval_12283 chr1 191388018 191388389 + 0 NA exon (ENSMUSG00000026626.11, exon 2 of 2) protein_coding-exon (ENSMUSG00000026626.11, exon 2 of 2) 11096 ENSMUSG00000026626.11 ENSMUSG00000026626 ENSMUST00000194832 Ppp2r5a protein_coding Interval_96287 chr2 121309062 121309604 + 0 NA exon (ENSMUSG00000027254.13, exon 7 of 7) protein_coding-exon (ENSMUSG00000027254.13, exon 7 of 7) -13325 ENSMUSG00000087704.1 ENSMUSG00000087704 ENSMUST00000129000 Gm14978 antisense Interval_77908 chr18 5360304 5360659 + 0 NA intron (ENSMUSG00000117520.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000117520.1, intron 1 of 1) 1380 ENSMUSG00000117520.1 ENSMUSG00000117520 ENSMUST00000234056 Gm50064 lincRNA Interval_109783 chr3 146945447 146946464 + 0 NA intron (ENSMUSG00000036745.15, intron 2 of 5) protein_coding-intron (ENSMUSG00000036745.15, intron 18 of 21) 2035 ENSMUSG00000036745.15 ENSMUSG00000036745 ENSMUST00000197547 Ttll7 protein_coding Interval_151925 chr7 127564735 127565025 + 0 NA exon (ENSMUSG00000106715.3, exon 3 of 3) protein_coding-exon (ENSMUSG00000106715.3, exon 3 of 3) 3301 ENSMUSG00000106715.3 ENSMUSG00000106715 ENSMUST00000190278 Tmem265 protein_coding Interval_32609 chr11 109124467 109124698 + 0 NA Intergenic Intergenic 19787 ENSMUSG00000078605.2 ENSMUSG00000078605 ENSMUST00000106710 E030025P04Rik protein_coding Interval_174359 chrX 148801937 148802158 + 0 NA Intergenic Intergenic 13490 ENSMUSG00000083256.1 ENSMUSG00000083256 ENSMUST00000122077 Kars-ps1 processed_pseudogene Interval_93510 chr2 73659933 73661307 + 0 NA promoter-TSS (ENSMUSG00000056486.18) protein_coding-promoter-TSS (ENSMUSG00000056486.18) 2350 ENSMUSG00000085838.1 ENSMUSG00000085838 ENSMUST00000123613 Chn1os1 antisense Interval_171134 chr9 114697406 114698116 + 0 NA intron (ENSMUSG00000032435.9, intron 2 of 2) protein_coding-intron (ENSMUSG00000032435.9, intron 2 of 12) 8971 ENSMUSG00000032435.9 ENSMUSG00000032435 ENSMUST00000047404 Dync1li1 protein_coding Interval_114800 chr4 85346911 85347204 + 0 NA intron (ENSMUSG00000028488.15, intron 1 of 7) protein_coding-intron (ENSMUSG00000028488.15, intron 1 of 8) -29284 ENSMUSG00000028488.15 ENSMUSG00000028488 ENSMUST00000133109 Sh3gl2 protein_coding Interval_76266 chr17 78604028 78604876 + 0 NA intron (ENSMUSG00000024076.10, intron 8 of 12) protein_coding-intron (ENSMUSG00000024076.10, intron 9 of 13) 30524 ENSMUSG00000024076.10 ENSMUSG00000024076 ENSMUST00000232864 Vit protein_coding Interval_34799 chr12 11320458 11320989 + 0 NA TTS (ENSMUSG00000020608.7) protein_coding-TTS (ENSMUSG00000020608.7) 20836 ENSMUSG00000098879.1 ENSMUSG00000098879 ENSMUST00000184262 Mir7675 miRNA Interval_60143 chr15 66297023 66298195 + 0 NA Intergenic Intergenic 10692 ENSMUSG00000099054.1 ENSMUSG00000099054 ENSMUST00000184211 Gm27242 lincRNA Interval_151611 chr7 125211521 125211801 + 0 NA Intergenic Intergenic 8225 ENSMUSG00000073844.5 ENSMUSG00000073844 ENSMUST00000073056 Gm21957 processed_pseudogene Interval_29448 chr11 84066025 84066323 + 0 NA intron (ENSMUSG00000018648.15, intron 1 of 2) protein_coding-intron (ENSMUSG00000018648.15, intron 2 of 3) 2405 ENSMUSG00000018648.15 ENSMUSG00000018648 ENSMUST00000138208 Dusp14 protein_coding Interval_77626 chr17 93306081 93306672 + 0 NA Intergenic Intergenic 10885 ENSMUSG00000117362.1 ENSMUSG00000117362 ENSMUST00000234454 Gm9665 processed_pseudogene Interval_168987 chr9 90048679 90048965 + 0 NA Intergenic Intergenic -5732 ENSMUSG00000032359.14 ENSMUSG00000032359 ENSMUST00000151219 Ctsh protein_coding Interval_157426 chr8 70282395 70283804 + 0 NA promoter-TSS (ENSMUSG00000003573.15) protein_coding-promoter-TSS (ENSMUSG00000003573.15) 65 ENSMUSG00000003573.15 ENSMUSG00000003573 ENSMUST00000135368 Homer3 protein_coding Interval_115268 chr4 95050094 95053751 + 0 NA exon (ENSMUSG00000052684.4, exon 1 of 1) protein_coding-exon (ENSMUSG00000052684.4, exon 1 of 1) 300 ENSMUSG00000052684.4 ENSMUSG00000052684 ENSMUST00000107094 Jun protein_coding Interval_37257 chr12 63197478 63197765 + 0 NA Intergenic Intergenic 27440 ENSMUSG00000113393.1 ENSMUSG00000113393 ENSMUST00000221219 Gm48415 processed_pseudogene Interval_58663 chr15 36884820 36885996 + 0 NA Intergenic Intergenic -5592 ENSMUSG00000072618.2 ENSMUSG00000072618 ENSMUST00000100713 Gm10384 lincRNA Interval_11107 chr1 179423368 179423618 + 0 NA intron (ENSMUSG00000055067.15, intron 1 of 11) protein_coding-intron (ENSMUSG00000055067.15, intron 1 of 5) 94512 ENSMUSG00000055067.15 ENSMUSG00000055067 ENSMUST00000194237 Smyd3 protein_coding Interval_104794 chr3 73456268 73456846 + 0 NA intron (ENSMUSG00000102362.1, intron 2 of 7) lincRNA-intron (ENSMUSG00000102820.1, intron 4 of 4) 25094 ENSMUSG00000102362.1 ENSMUSG00000102362 ENSMUST00000194514 4930509J09Rik lincRNA Interval_87679 chr19 54324964 54325428 + 0 NA Intergenic Intergenic -119784 ENSMUSG00000117755.1 ENSMUSG00000117755 ENSMUST00000236789 Gm50188 processed_pseudogene Interval_136082 chr6 50557742 50558199 + 0 NA Intergenic Intergenic 8568 ENSMUSG00000063694.5 ENSMUSG00000063694 ENSMUST00000077766 Cycs protein_coding Interval_58080 chr15 27723959 27724723 + 0 NA Intergenic Intergenic -64189 ENSMUSG00000056069.10 ENSMUSG00000056069 ENSMUST00000232492 Otulinl protein_coding Interval_138856 chr6 92658278 92658542 + 0 NA intron (ENSMUSG00000030020.13, intron 2 of 8) protein_coding-intron (ENSMUSG00000030020.13, intron 2 of 8) -91044 ENSMUSG00000030020.13 ENSMUSG00000030020 ENSMUST00000113445 Prickle2 protein_coding Interval_93345 chr2 72131350 72131670 + 0 NA intron (ENSMUSG00000085439.1, intron 1 of 3) protein_coding-intron (ENSMUSG00000049044.16, intron 1 of 27) 17286 ENSMUSG00000085439.1 ENSMUSG00000085439 ENSMUST00000126462 Rapgef4os1 antisense Interval_54766 chr14 74878483 74878724 + 0 NA intron (ENSMUSG00000068015.8, intron 1 of 18) protein_coding-intron (ENSMUSG00000068015.8, intron 1 of 19) -47842 ENSMUSG00000115002.1 ENSMUSG00000115002 ENSMUST00000227773 Gm10847 antisense Interval_30066 chr11 88976281 88976594 + 0 NA intron (ENSMUSG00000033983.14, intron 5 of 10) protein_coding-intron (ENSMUSG00000033983.14, intron 1 of 6) 3780 ENSMUSG00000081766.3 ENSMUSG00000081766 ENSMUST00000122062 2210409E12Rik transcribed_processed_pseudogene Interval_156241 chr8 46470487 46471779 + 0 NA promoter-TSS (ENSMUSG00000018796.13) protein_coding-promoter-TSS (ENSMUSG00000018796.13) 61 ENSMUSG00000018796.13 ENSMUSG00000018796 ENSMUST00000152423 Acsl1 protein_coding Interval_140877 chr6 122527719 122528707 + 0 NA intron (ENSMUSG00000030116.14, intron 9 of 9) protein_coding-intron (ENSMUSG00000030116.14, intron 8 of 8) 14630 ENSMUSG00000030116.14 ENSMUSG00000030116 ENSMUST00000126357 Mfap5 protein_coding Interval_88001 chr19 57700886 57701746 + 0 NA intron (ENSMUSG00000054843.9, intron 16 of 28) protein_coding-intron (ENSMUSG00000054843.9, intron 16 of 28) 90282 ENSMUSG00000054843.9 ENSMUSG00000054843 ENSMUST00000077282 Atrnl1 protein_coding Interval_66257 chr16 32682360 32684028 + 0 NA TTS (ENSMUSG00000022791.19) protein_coding-TTS (ENSMUSG00000022791.19) 5263 ENSMUSG00000022791.19 ENSMUSG00000022791 ENSMUST00000232650 Tnk2 protein_coding Interval_133817 chr6 12748010 12749637 + 0 NA exon (ENSMUSG00000032625.14, exon 1 of 28) protein_coding-exon (ENSMUSG00000032625.14, exon 1 of 28) 430 ENSMUSG00000032625.14 ENSMUSG00000032625 ENSMUST00000119443 Thsd7a protein_coding Interval_77328 chr17 88022732 88022916 + 0 NA intron (ENSMUSG00000005371.15, intron 1 of 22) protein_coding-intron (ENSMUSG00000005371.15, intron 1 of 22) 42419 ENSMUSG00000005371.15 ENSMUSG00000005371 ENSMUST00000235056 Fbxo11 protein_coding Interval_126830 chr5 93282430 93283263 + 0 NA Intergenic Intergenic 15245 ENSMUSG00000029385.14 ENSMUSG00000029385 ENSMUST00000149329 Ccng2 protein_coding Interval_100252 chr2 167980544 167980732 + 0 NA exon (ENSMUSG00000074577.9, exon 22 of 22) protein_coding-exon (ENSMUSG00000074577.9, exon 22 of 22) 10709 ENSMUSG00000074577.9 ENSMUSG00000074577 ENSMUST00000142702 Ripor3 protein_coding Interval_4695 chr1 77406939 77408650 + 0 NA intron (ENSMUSG00000026235.14, intron 4 of 15) protein_coding-intron (ENSMUSG00000026235.14, intron 5 of 17) 88974 ENSMUSG00000099141.1 ENSMUSG00000099141 ENSMUST00000184495 Mir6352 miRNA Interval_21891 chr11 5017380 5017923 + 0 NA TTS (ENSMUSG00000009090.17) protein_coding-TTS (ENSMUSG00000009090.17) -13326 ENSMUSG00000009090.17 ENSMUSG00000009090 ENSMUST00000133007 Ap1b1 protein_coding Interval_31147 chr11 98446561 98448064 + 0 NA intron (ENSMUSG00000019312.10, intron 1 of 13) protein_coding-intron (ENSMUSG00000019312.10, intron 1 of 14) 244 ENSMUSG00000019312.10 ENSMUSG00000019312 ENSMUST00000129034 Grb7 protein_coding Interval_9198 chr1 155027667 155028032 + 0 NA intron (ENSMUSG00000101880.1, intron 1 of 3) lincRNA-intron (ENSMUSG00000101880.1, intron 1 of 3) -3890 ENSMUSG00000101433.1 ENSMUSG00000101433 ENSMUST00000191584 Gm29441 processed_pseudogene Interval_172603 chrX 38179914 38182150 + 0 NA exon (ENSMUSG00000080942.1, exon 1 of 1) processed_pseudogene-exon (ENSMUSG00000080942.1, exon 1 of 1) 304 ENSMUSG00000080942.1 ENSMUSG00000080942 ENSMUST00000118349 Zfp36l1-ps processed_pseudogene Interval_93276 chr2 71637970 71640729 + 0 NA Intergenic Intergenic -80068 ENSMUSG00000064263.6 ENSMUSG00000064263 ENSMUST00000079720 Platr26 lincRNA Interval_38855 chr12 83430128 83430399 + 0 NA intron (ENSMUSG00000021221.15, intron 1 of 10) protein_coding-intron (ENSMUSG00000021221.15, intron 1 of 8) 57453 ENSMUSG00000021221.15 ENSMUSG00000021221 ENSMUST00000177801 Dpf3 protein_coding Interval_152925 chr7 139797058 139797573 + 0 NA Intergenic Intergenic 18297 ENSMUSG00000098619.1 ENSMUSG00000098619 ENSMUST00000184499 Mir6401 miRNA Interval_50727 chr14 18628388 18628716 + 0 NA intron (ENSMUSG00000058317.12, intron 4 of 4) protein_coding-intron (ENSMUSG00000058317.12, intron 3 of 4) -83420 ENSMUSG00000114529.1 ENSMUSG00000114529 ENSMUST00000224515 Gm4939 processed_pseudogene Interval_75738 chr17 70957294 70958690 + 0 NA TTS (ENSMUSG00000117200.1) processed_pseudogene-TTS (ENSMUSG00000117200.1) 868 ENSMUSG00000117200.1 ENSMUSG00000117200 ENSMUST00000233596 Gm49905 processed_pseudogene Interval_123089 chr5 29577583 29578317 + 0 NA intron (ENSMUSG00000039000.8, intron 1 of 13) protein_coding-intron (ENSMUSG00000039000.8, intron 1 of 22) 39797 ENSMUSG00000078182.4 ENSMUSG00000078182 ENSMUST00000075518 Gm6083 processed_pseudogene Interval_65248 chr16 20833569 20834155 + 0 NA Intergenic Intergenic -11222 ENSMUSG00000099764.1 ENSMUSG00000099764 ENSMUST00000127484 Rps10-ps2 processed_pseudogene Interval_75299 chr17 65761623 65763868 + 0 NA intron (ENSMUSG00000056515.9, intron 1 of 2) protein_coding-intron (ENSMUSG00000056515.9, intron 1 of 6) 9895 ENSMUSG00000056515.9 ENSMUSG00000056515 ENSMUST00000233258 Rab31 protein_coding Interval_3911 chr1 64723240 64723838 + 0 NA exon (ENSMUSG00000070871.10, exon 10 of 10) protein_coding-exon (ENSMUSG00000070871.10, exon 10 of 10) -12701 ENSMUSG00000102140.1 ENSMUSG00000102140 ENSMUST00000194323 Gm38058 TEC Interval_81768 chr18 64506641 64507117 + 0 NA intron (ENSMUSG00000024587.10, intron 5 of 5) protein_coding-intron (ENSMUSG00000024587.10, intron 8 of 14) 4998 ENSMUSG00000024587.10 ENSMUSG00000024587 ENSMUST00000237027 Nars protein_coding Interval_39587 chr12 91187359 91188657 + 0 NA intron (ENSMUSG00000061533.16, intron 6 of 12) protein_coding-intron (ENSMUSG00000061533.16, intron 20 of 25) 28147 ENSMUSG00000113983.1 ENSMUSG00000113983 ENSMUST00000220984 Gm47742 processed_pseudogene Interval_147627 chr7 70334838 70335111 + 0 NA intron (ENSMUSG00000109097.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000109097.1, intron 1 of 1) 2869 ENSMUSG00000109097.1 ENSMUSG00000109097 ENSMUST00000207682 Gm29683 lincRNA Interval_171068 chr9 114341024 114341932 + 0 NA Intergenic Intergenic 11343 ENSMUSG00000053820.4 ENSMUSG00000053820 ENSMUST00000066460 Bcl2a1c protein_coding Interval_10130 chr1 165977684 165978192 + 0 NA intron (ENSMUSG00000026565.18, intron 1 of 6) protein_coding-intron (ENSMUSG00000026565.18, intron 1 of 14) -25022 ENSMUSG00000097196.2 ENSMUSG00000097196 ENSMUST00000181378 Gm26665 lincRNA Interval_27888 chr11 70640858 70641111 + 0 NA exon (ENSMUSG00000050675.7, exon 2 of 2) protein_coding-exon (ENSMUSG00000050675.7, exon 2 of 2) 1840 ENSMUSG00000050675.7 ENSMUSG00000050675 ENSMUST00000108551 Gp1ba protein_coding Interval_36637 chr12 51681811 51682919 + 0 NA intron (ENSMUSG00000020954.16, intron 1 of 15) protein_coding-intron (ENSMUSG00000020954.16, intron 1 of 17) -8668 ENSMUSG00000020955.9 ENSMUSG00000020955 ENSMUST00000021338 Ap4s1 protein_coding Interval_127134 chr5 100508681 100509951 + 0 NA Intergenic Intergenic 4304 ENSMUSG00000105181.1 ENSMUSG00000105181 ENSMUST00000195972 Gm19620 processed_pseudogene Interval_48257 chr13 97484046 97486428 + 0 NA intron (ENSMUSG00000078952.9, intron 2 of 2) lincRNA-intron (ENSMUSG00000078952.9, intron 1 of 1) 2282 ENSMUSG00000078952.9 ENSMUSG00000078952 ENSMUST00000180371 Lncenc1 lincRNA Interval_76642 chr17 83063910 83065189 + 0 NA intron (ENSMUSG00000117399.1, intron 2 of 3) processed_transcript-intron (ENSMUSG00000117399.1, intron 2 of 3) -4356 ENSMUSG00000100154.1 ENSMUSG00000100154 ENSMUST00000187700 Gm29052 lincRNA Interval_28907 chr11 79194882 79195267 + 0 NA Intergenic Intergenic -17722 ENSMUSG00000081000.1 ENSMUSG00000081000 ENSMUST00000121698 Gm11200 processed_pseudogene Interval_63916 chr16 4557953 4561182 + 0 NA promoter-TSS (ENSMUSG00000005718.8) protein_coding-promoter-TSS (ENSMUSG00000005718.8) -784 ENSMUSG00000005718.8 ENSMUSG00000005718 ENSMUST00000229956 Tfap4 protein_coding Interval_16558 chr10 63652069 63653441 + 0 NA intron (ENSMUSG00000060843.11, intron 5 of 17) protein_coding-intron (ENSMUSG00000060843.11, intron 4 of 16) -168300 ENSMUSG00000060843.11 ENSMUSG00000060843 ENSMUST00000135474 Ctnna3 protein_coding Interval_114672 chr4 83646218 83646487 + 0 NA intron (ENSMUSG00000052407.17, intron 11 of 25) protein_coding-intron (ENSMUSG00000052407.17, intron 11 of 25) 49049 ENSMUSG00000098217.1 ENSMUSG00000098217 ENSMUST00000182160 Gm27046 processed_pseudogene Interval_36363 chr12 42028780 42028976 + 0 NA TTS (ENSMUSG00000113420.1) processed_pseudogene-TTS (ENSMUSG00000113420.1) 666 ENSMUSG00000113420.1 ENSMUSG00000113420 ENSMUST00000221134 Gm7242 processed_pseudogene Interval_73843 chr17 44480062 44480881 + 0 NA Intergenic Intergenic -81519 ENSMUSG00000090048.1 ENSMUSG00000090048 ENSMUST00000160203 Runx2os3 antisense Interval_54966 chr14 76540150 76542057 + 0 NA intron (ENSMUSG00000052584.10, intron 2 of 2) protein_coding-intron (ENSMUSG00000052584.10, intron 2 of 2) 14511 ENSMUSG00000115092.1 ENSMUSG00000115092 ENSMUST00000227784 E130202H07Rik lincRNA Interval_21640 chr11 3390125 3391463 + 0 NA intron (ENSMUSG00000020451.17, intron 1 of 4) protein_coding-intron (ENSMUSG00000020451.17, intron 2 of 15) -35883 ENSMUSG00000087055.1 ENSMUSG00000087055 ENSMUST00000142322 Gm11948 sense_intronic Interval_132308 chr5 144071190 144071523 + 0 NA Intergenic Intergenic -2166 ENSMUSG00000105150.1 ENSMUSG00000105150 ENSMUST00000197465 Gm43615 processed_pseudogene Interval_57496 chr15 11835631 11836965 + 0 NA Intergenic Intergenic 69376 ENSMUSG00000022206.7 ENSMUSG00000022206 ENSMUST00000226878 Npr3 protein_coding Interval_74324 chr17 48963518 48964457 + 0 NA intron (ENSMUSG00000040490.4, intron 1 of 2) protein_coding-intron (ENSMUSG00000040490.4, intron 1 of 2) 31608 ENSMUSG00000040490.4 ENSMUSG00000040490 ENSMUST00000046254 Lrfn2 protein_coding Interval_75696 chr17 70728250 70728713 + 0 NA intron (ENSMUSG00000003279.17, intron 5 of 10) protein_coding-intron (ENSMUSG00000003279.17, intron 9 of 14) 27101 ENSMUSG00000097282.1 ENSMUSG00000097282 ENSMUST00000181546 5031415H12Rik antisense Interval_171586 chr9 119388403 119390465 + 0 NA intron (ENSMUSG00000035769.9, intron 18 of 19) protein_coding-intron (ENSMUSG00000035769.9, intron 17 of 18) 19582 ENSMUSG00000111204.1 ENSMUSG00000111204 ENSMUST00000217028 Gm47320 antisense Interval_28291 chr11 74946077 74946954 + 0 NA intron (ENSMUSG00000038290.15, intron 7 of 16) protein_coding-intron (ENSMUSG00000038290.15, intron 8 of 18) -10364 ENSMUSG00000088719.1 ENSMUSG00000088719 ENSMUST00000158094 Gm22733 snRNA Interval_51194 chr14 24622259 24622702 + 0 NA TTS (ENSMUSG00000089887.2) lincRNA-TTS (ENSMUSG00000089887.2) 4923 ENSMUSG00000089887.2 ENSMUSG00000089887 ENSMUST00000159562 4930428N03Rik lincRNA Interval_151266 chr7 120504093 120506332 + 0 NA exon (ENSMUSG00000109326.1, exon 1 of 2) processed_pseudogene-exon (ENSMUSG00000109326.1, exon 1 of 2) 554 ENSMUSG00000109326.1 ENSMUSG00000109326 ENSMUST00000208467 Gm9165 processed_pseudogene Interval_123819 chr5 35739603 35742068 + 0 NA promoter-TSS (ENSMUSG00000036553.16) protein_coding-promoter-TSS (ENSMUSG00000036553.16) -848 ENSMUSG00000036553.16 ENSMUSG00000036553 ENSMUST00000154118 Sh3tc1 protein_coding Interval_118614 chr4 132779555 132780349 + 0 NA Intergenic Intergenic 4824 ENSMUSG00000028884.14 ENSMUSG00000028884 ENSMUST00000156968 Rpa2 protein_coding Interval_31111 chr11 98209090 98210851 + 0 NA intron (ENSMUSG00000003119.14, intron 1 of 13) protein_coding-intron (ENSMUSG00000003119.14, intron 1 of 12) 24604 ENSMUSG00000085897.2 ENSMUSG00000085897 ENSMUST00000121487 Gm11604 processed_pseudogene Interval_55127 chr14 78385827 78386121 + 0 NA Intergenic Intergenic -74634 ENSMUSG00000092774.1 ENSMUSG00000092774 ENSMUST00000175033 Gm26197 rRNA Interval_117616 chr4 125072591 125072811 + 0 NA exon (ENSMUSG00000050213.6, exon 4 of 4) protein_coding-exon (ENSMUSG00000050213.6, exon 4 of 4) 5999 ENSMUSG00000050213.6 ENSMUSG00000050213 ENSMUST00000145733 Snip1 protein_coding Interval_87061 chr19 45859826 45860638 + 0 NA intron (ENSMUSG00000039901.10, intron 23 of 25) protein_coding-intron (ENSMUSG00000039901.10, intron 23 of 25) 16615 ENSMUSG00000117956.1 ENSMUSG00000117956 ENSMUST00000235344 Gm50196 antisense Interval_42646 chr13 17688678 17689130 + 0 NA intron (ENSMUSG00000055137.7, intron 1 of 1) protein_coding-intron (ENSMUSG00000055137.7, intron 1 of 13) 5833 ENSMUSG00000055137.7 ENSMUSG00000055137 ENSMUST00000221467 Sugct protein_coding Interval_12448 chr1 193538148 193539322 + 0 NA Intergenic Intergenic -28561 ENSMUSG00000097850.2 ENSMUSG00000097850 ENSMUST00000180420 Mir205hg lincRNA Interval_166852 chr9 63205243 63206540 + 0 NA intron (ENSMUSG00000058444.8, intron 19 of 21) protein_coding-intron (ENSMUSG00000058444.8, intron 19 of 21) -58880 ENSMUSG00000022245.15 ENSMUSG00000022245 ENSMUST00000055281 Skor1 protein_coding Interval_9252 chr1 155511916 155513196 + 0 NA Intergenic Intergenic 14587 ENSMUSG00000073535.5 ENSMUSG00000073535 ENSMUST00000194133 Gm5532 lincRNA Interval_2779 chr1 44728203 44729137 + 0 NA intron (ENSMUSG00000056870.9, intron 2 of 11) protein_coding-intron (ENSMUSG00000056870.9, intron 3 of 10) 16279 ENSMUSG00000101701.1 ENSMUSG00000101701 ENSMUST00000186732 4930521E06Rik antisense Interval_150737 chr7 114020548 114021658 + 0 NA intron (ENSMUSG00000038156.16, intron 7 of 15) protein_coding-intron (ENSMUSG00000038156.16, intron 7 of 15) -65795 ENSMUSG00000110248.1 ENSMUSG00000110248 ENSMUST00000210417 Gm45615 antisense Interval_3272 chr1 55380015 55382270 + 0 NA TTS (ENSMUSG00000101085.1) processed_pseudogene-TTS (ENSMUSG00000101085.1) 945 ENSMUSG00000101085.1 ENSMUSG00000101085 ENSMUST00000188319 Gm8531 processed_pseudogene Interval_49915 chr13 118215611 118216117 + 0 NA Intergenic Intergenic 168544 ENSMUSG00000114713.1 ENSMUSG00000114713 ENSMUST00000225643 Gm9633 processed_pseudogene Interval_125623 chr5 72832309 72832661 + 0 NA intron (ENSMUSG00000029217.16, intron 1 of 2) protein_coding-intron (ENSMUSG00000029217.16, intron 1 of 18) 11964 ENSMUSG00000029217.16 ENSMUSG00000029217 ENSMUST00000202547 Tec protein_coding Interval_140878 chr6 122532410 122533539 + 0 NA Intergenic Intergenic 19391 ENSMUSG00000030116.14 ENSMUSG00000030116 ENSMUST00000126357 Mfap5 protein_coding Interval_122434 chr5 22584710 22584922 + 0 NA intron (ENSMUSG00000097207.7, intron 3 of 4) lincRNA-intron (ENSMUSG00000097207.7, intron 3 of 4) 20859 ENSMUSG00000105156.1 ENSMUSG00000105156 ENSMUST00000198791 Gm9057 processed_pseudogene Interval_18085 chr10 82186439 82186793 + 0 NA intron (ENSMUSG00000112110.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000112110.1, intron 1 of 5) 8244 ENSMUSG00000112110.1 ENSMUSG00000112110 ENSMUST00000217860 Gm15608 lincRNA Interval_108926 chr3 133387413 133387767 + 0 NA Intergenic Intergenic 44233 ENSMUSG00000080506.1 ENSMUSG00000080506 ENSMUST00000116856 Gm25042 miRNA Interval_29781 chr11 86745810 86746637 + 0 NA intron (ENSMUSG00000047126.17, intron 1 of 31) protein_coding-intron (ENSMUSG00000047126.17, intron 1 of 31) -19740 ENSMUSG00000047126.17 ENSMUSG00000047126 ENSMUST00000133501 Cltc protein_coding Interval_44236 chr13 42679204 42681479 + 0 NA promoter-TSS (ENSMUSG00000054728.17) protein_coding-promoter-TSS (ENSMUSG00000054728.17) 55347 ENSMUSG00000095255.2 ENSMUSG00000095255 ENSMUST00000116935 Gm23086 miRNA Interval_112798 chr4 45064113 45064371 + 0 NA intron (ENSMUSG00000048232.12, intron 1 of 10) protein_coding-intron (ENSMUSG00000048232.12, intron 1 of 10) -5624 ENSMUSG00000048232.12 ENSMUSG00000048232 ENSMUST00000155583 Fbxo10 protein_coding Interval_99315 chr2 158886574 158887007 + 0 NA Intergenic Intergenic 59372 ENSMUSG00000027655.14 ENSMUSG00000027655 ENSMUST00000143195 Dhx35 protein_coding Interval_27995 chr11 72041863 72042867 + 0 NA promoter-TSS (ENSMUSG00000020808.3) protein_coding-promoter-TSS (ENSMUSG00000020808.3) -159 ENSMUSG00000020808.3 ENSMUSG00000020808 ENSMUST00000125655 Pimreg protein_coding Interval_122084 chr5 16653353 16653673 + 0 NA Intergenic Intergenic 47791 ENSMUSG00000105660.1 ENSMUSG00000105660 ENSMUST00000200612 Gm42975 TEC Interval_108595 chr3 129433702 129434751 + 0 NA exon (ENSMUSG00000105712.1, exon 1 of 1) processed_pseudogene-exon (ENSMUSG00000105712.1, exon 1 of 1) 553 ENSMUSG00000105712.1 ENSMUSG00000105712 ENSMUST00000199748 Gm5712 processed_pseudogene Interval_6116 chr1 97540549 97540743 + 0 NA intron (ENSMUSG00000101348.6, intron 3 of 4) transcribed_unprocessed_pseudogene-intron (ENSMUSG00000101348.6, intron 3 of 4) 4802 ENSMUSG00000103179.1 ENSMUSG00000103179 ENSMUST00000192636 Gm37171 TEC Interval_14020 chr10 25621079 25622155 + 0 NA promoter-TSS (ENSMUSG00000112630.1) lincRNA-promoter-TSS (ENSMUSG00000112630.1) -54 ENSMUSG00000112630.1 ENSMUSG00000112630 ENSMUST00000218080 Gm36908 lincRNA Interval_72068 chr17 27819569 27821535 + 0 NA promoter-TSS (ENSMUSG00000056692.13) protein_coding-promoter-TSS (ENSMUSG00000056692.13) 14 ENSMUSG00000056692.13 ENSMUSG00000056692 ENSMUST00000233035 Ilrun protein_coding Interval_112582 chr4 43394251 43394607 + 0 NA intron (ENSMUSG00000035969.15, intron 1 of 1) protein_coding-intron (ENSMUSG00000035969.15, intron 1 of 11) -20267 ENSMUSG00000035969.15 ENSMUSG00000035969 ENSMUST00000123447 Rusc2 protein_coding Interval_52873 chr14 51428119 51428336 + 0 NA promoter-TSS (ENSMUSG00000115374.1) transcribed_unprocessed_pseudogene-promoter-TSS (ENSMUSG00000115374.1) -536 ENSMUSG00000115374.1 ENSMUSG00000115374 ENSMUST00000161721 Vmn2r-ps111 transcribed_unprocessed_pseudogene Interval_14947 chr10 41392781 41393818 + 0 NA intron (ENSMUSG00000091415.5, intron 25 of 39) protein_coding-intron (ENSMUSG00000091415.5, intron 25 of 39) 5399 ENSMUSG00000094663.1 ENSMUSG00000094663 ENSMUST00000177631 Gm25626 snRNA Interval_71523 chr17 24291520 24291744 + 0 NA exon (ENSMUSG00000035435.17, exon 18 of 30) protein_coding-exon (ENSMUSG00000035435.17, exon 18 of 30) -13037 ENSMUSG00000094175.1 ENSMUSG00000094175 ENSMUST00000116896 Gm24427 miRNA Interval_90290 chr2 29589286 29589534 + 0 NA Intergenic Intergenic -54405 ENSMUSG00000039844.20 ENSMUSG00000039844 ENSMUST00000123953 Rapgef1 protein_coding Interval_159241 chr8 92070766 92072402 + 0 NA Intergenic Intergenic 31667 ENSMUSG00000065636.1 ENSMUSG00000065636 ENSMUST00000083702 Gm24254 snRNA Interval_22133 chr11 6526676 6529050 + 0 NA promoter-TSS (ENSMUSG00000085156.8) lincRNA-promoter-TSS (ENSMUSG00000085156.8) 302 ENSMUSG00000064513.1 ENSMUSG00000064513 ENSMUST00000082579 Snora9 snoRNA Interval_131729 chr5 139540295 139541576 + 0 NA intron (ENSMUSG00000106056.1, intron 3 of 3) lincRNA-intron (ENSMUSG00000106056.1, intron 3 of 3) -2963 ENSMUSG00000029546.12 ENSMUSG00000029546 ENSMUST00000174792 Uncx protein_coding Interval_99330 chr2 159088393 159088647 + 0 NA Intergenic Intergenic 18657 ENSMUSG00000104628.1 ENSMUSG00000104628 ENSMUST00000196974 Gm44319 miRNA Interval_47149 chr13 76345155 76346483 + 0 NA Intergenic Intergenic -24540 ENSMUSG00000092732.1 ENSMUSG00000092732 ENSMUST00000174991 Gm24025 miRNA Interval_42553 chr13 15329472 15329796 + 0 NA Intergenic Intergenic -45990 ENSMUSG00000113410.1 ENSMUSG00000113410 ENSMUST00000222267 Gm20043 lincRNA Interval_107658 chr3 109525353 109525591 + 0 NA intron (ENSMUSG00000033721.16, intron 12 of 16) protein_coding-intron (ENSMUSG00000033721.16, intron 12 of 26) -122052 ENSMUSG00000033721.16 ENSMUSG00000033721 ENSMUST00000148866 Vav3 protein_coding Interval_158976 chr8 88369334 88369586 + 0 NA Intergenic Intergenic -21661 ENSMUSG00000110280.1 ENSMUSG00000110280 ENSMUST00000211701 Gm45497 processed_pseudogene Interval_155615 chr8 35194754 35195223 + 0 NA Intergenic Intergenic -11102 ENSMUSG00000110314.1 ENSMUSG00000110314 ENSMUST00000209412 Gm45625 lincRNA Interval_112791 chr4 45026636 45027190 + 0 NA TTS (ENSMUSG00000028318.14) protein_coding-TTS (ENSMUSG00000028318.14) -4349 ENSMUSG00000028318.14 ENSMUSG00000028318 ENSMUST00000153252 Polr1e protein_coding Interval_61759 chr15 83895515 83896624 + 0 NA exon (ENSMUSG00000022441.17, exon 8 of 15) protein_coding-exon (ENSMUSG00000022441.17, exon 8 of 15) 50530 ENSMUSG00000022441.17 ENSMUSG00000022441 ENSMUST00000122836 Efcab6 protein_coding Interval_147095 chr7 62542028 62542453 + 0 NA Intergenic Intergenic 35976 ENSMUSG00000108928.1 ENSMUSG00000108928 ENSMUST00000207286 Vmn2r-ps61 unprocessed_pseudogene Interval_56196 chr14 111971736 111972856 + 0 NA Intergenic Intergenic -6248 ENSMUSG00000088995.1 ENSMUSG00000088995 ENSMUST00000158370 Gm22764 snRNA Interval_134581 chr6 29743067 29743483 + 0 NA intron (ENSMUSG00000001761.7, intron 1 of 11) protein_coding-intron (ENSMUSG00000001761.7, intron 1 of 11) -7486 ENSMUSG00000081564.1 ENSMUSG00000081564 ENSMUST00000119868 Gm13717 processed_pseudogene Interval_104599 chr3 68659384 68659710 + 0 NA Intergenic Intergenic -34474 ENSMUSG00000027776.12 ENSMUSG00000027776 ENSMUST00000195517 Il12a protein_coding Interval_82861 chr18 77564841 77566100 + 0 NA promoter-TSS (ENSMUSG00000025427.15) protein_coding-promoter-TSS (ENSMUSG00000025427.15) 52030 ENSMUSG00000117855.1 ENSMUSG00000117855 ENSMUST00000236419 Gm50197 processed_pseudogene Interval_133363 chr6 3745749 3746505 + 0 NA intron (ENSMUSG00000023964.15, intron 3 of 14) protein_coding-intron (ENSMUSG00000023964.15, intron 3 of 15) 17503 ENSMUSG00000023964.15 ENSMUSG00000023964 ENSMUST00000170266 Calcr protein_coding Interval_31933 chr11 103938240 103940230 + 0 NA intron (ENSMUSG00000034187.18, intron 1 of 8) protein_coding-intron (ENSMUSG00000034187.18, intron 1 of 20) -40354 ENSMUSG00000062421.13 ENSMUSG00000062421 ENSMUST00000154089 Arf2 protein_coding Interval_126066 chr5 77189979 77190589 + 0 NA Intergenic Intergenic 20921 ENSMUSG00000053030.11 ENSMUSG00000053030 ENSMUST00000121825 Spink2 protein_coding Interval_169759 chr9 101006012 101006737 + 0 NA intron (ENSMUSG00000032527.13, intron 5 of 13) protein_coding-intron (ENSMUSG00000032527.13, intron 6 of 14) 28507 ENSMUSG00000032527.13 ENSMUSG00000032527 ENSMUST00000189498 Pccb protein_coding Interval_129986 chr5 123523668 123524805 + 0 NA promoter-TSS (ENSMUSG00000029433.16) protein_coding-promoter-TSS (ENSMUSG00000029433.16) -124 ENSMUSG00000029433.16 ENSMUSG00000029433 ENSMUST00000149334 Diablo protein_coding Interval_157772 chr8 72957371 72957702 + 0 NA intron (ENSMUSG00000004383.18, intron 7 of 15) protein_coding-intron (ENSMUSG00000004383.18, intron 6 of 14) -58976 ENSMUSG00000093140.1 ENSMUSG00000093140 ENSMUST00000175399 Mir28b miRNA Interval_116166 chr4 108333981 108334257 + 0 NA intron (ENSMUSG00000048351.14, intron 3 of 3) protein_coding-intron (ENSMUSG00000048351.14, intron 2 of 2) 5930 ENSMUSG00000048351.14 ENSMUSG00000048351 ENSMUST00000147054 Coa7 protein_coding Interval_63488 chr15 101411933 101413053 + 0 NA promoter-TSS (ENSMUSG00000023039.17) protein_coding-promoter-TSS (ENSMUSG00000023039.17) -182 ENSMUSG00000116116.1 ENSMUSG00000116116 ENSMUST00000231016 Gm671 antisense Interval_158318 chr8 81124184 81124390 + 0 NA Intergenic Intergenic 62953 ENSMUSG00000109980.1 ENSMUSG00000109980 ENSMUST00000210771 Gm45538 lincRNA Interval_149815 chr7 101792780 101793647 + 0 NA intron (ENSMUSG00000001829.17, intron 16 of 16) protein_coding-intron (ENSMUSG00000001829.17, intron 16 of 16) 2677 ENSMUSG00000110360.1 ENSMUSG00000110360 ENSMUST00000210465 Gm45380 processed_pseudogene Interval_72200 chr17 28548009 28549148 + 0 NA promoter-TSS (ENSMUSG00000024224.5) protein_coding-promoter-TSS (ENSMUSG00000024224.5) -833 ENSMUSG00000024224.5 ENSMUSG00000024224 ENSMUST00000025061 Clpsl2 protein_coding Interval_71517 chr17 24260995 24261780 + 0 NA Intergenic Intergenic -10040 ENSMUSG00000072082.7 ENSMUSG00000072082 ENSMUST00000234096 Ccnf protein_coding Interval_770 chr1 10835533 10836195 + 0 NA Intergenic Intergenic 30583 ENSMUSG00000100212.1 ENSMUSG00000100212 ENSMUST00000189483 Gm5522 processed_pseudogene Interval_109376 chr3 140894732 140894953 + 0 NA Intergenic Intergenic 13625 ENSMUSG00000104544.4 ENSMUSG00000104544 ENSMUST00000199504 Gm32754 lincRNA Interval_138177 chr6 85936645 85937725 + 0 NA Intergenic Intergenic -1254 ENSMUSG00000107203.1 ENSMUSG00000107203 ENSMUST00000201140 Gm7542 processed_pseudogene Interval_46289 chr13 63416002 63417055 + 0 NA intron (ENSMUSG00000021461.17, intron 1 of 6) protein_coding-intron (ENSMUSG00000021461.17, intron 1 of 15) -1761 ENSMUSG00000113126.1 ENSMUSG00000113126 ENSMUST00000220476 Gm47588 TEC Interval_50154 chr14 8321881 8322961 + 0 NA Intergenic Intergenic -12626 ENSMUSG00000021750.16 ENSMUSG00000021750 ENSMUST00000137133 Fam107a protein_coding Interval_128927 chr5 116134062 116134256 + 0 NA exon (ENSMUSG00000043913.14, exon 12 of 14) protein_coding-exon (ENSMUSG00000043913.14, exon 12 of 14) 10545 ENSMUSG00000086655.1 ENSMUSG00000086655 ENSMUST00000127792 C330018A13Rik antisense Interval_167957 chr9 74960888 74961641 + 0 NA intron (ENSMUSG00000034858.16, intron 2 of 12) protein_coding-intron (ENSMUSG00000034858.16, intron 2 of 12) 8380 ENSMUSG00000034858.16 ENSMUSG00000034858 ENSMUST00000081746 Fam214a protein_coding Interval_99353 chr2 160029186 160029388 + 0 NA intron (ENSMUSG00000086653.1, intron 3 of 3) lincRNA-intron (ENSMUSG00000086653.1, intron 3 of 3) 12634 ENSMUSG00000086653.1 ENSMUSG00000086653 ENSMUST00000140319 9130015L21Rik lincRNA Interval_45423 chr13 55090156 55090460 + 0 NA intron (ENSMUSG00000025878.16, intron 2 of 13) protein_coding-intron (ENSMUSG00000025878.16, intron 2 of 14) 4531 ENSMUSG00000094446.1 ENSMUSG00000094446 ENSMUST00000075962 Gm6344 processed_pseudogene Interval_325 chr1 3988739 3989148 + 0 NA Intergenic Intergenic -2728 ENSMUSG00000102343.1 ENSMUSG00000102343 ENSMUST00000192427 Gm37381 lincRNA Interval_19662 chr10 107484382 107484782 + 0 NA intron (ENSMUSG00000000435.1, intron 2 of 2) protein_coding-intron (ENSMUSG00000000435.1, intron 2 of 2) 1552 ENSMUSG00000000435.1 ENSMUSG00000000435 ENSMUST00000000445 Myf5 protein_coding Interval_14915 chr10 41040713 41041257 + 0 NA Intergenic Intergenic 5790 ENSMUSG00000111098.1 ENSMUSG00000111098 ENSMUST00000214667 Gm48057 lincRNA Interval_107067 chr3 103262776 103263221 + 0 NA Intergenic Intergenic -15735 ENSMUSG00000104976.1 ENSMUSG00000104976 ENSMUST00000200621 Gm43060 processed_pseudogene Interval_51393 chr14 27192353 27193122 + 0 NA intron (ENSMUSG00000021895.10, intron 3 of 13) protein_coding-intron (ENSMUSG00000021895.10, intron 3 of 13) -17660 ENSMUSG00000114349.1 ENSMUSG00000114349 ENSMUST00000225776 Gm7591 processed_pseudogene Interval_34927 chr12 13587468 13587802 + 0 NA Intergenic Intergenic 40011 ENSMUSG00000113666.1 ENSMUSG00000113666 ENSMUST00000221862 Gm35725 lincRNA Interval_106781 chr3 100742996 100743984 + 0 NA Intergenic Intergenic -4777 ENSMUSG00000087759.1 ENSMUSG00000087759 ENSMUST00000157134 Gm23465 misc_RNA Interval_26364 chr11 57366290 57366735 + 0 NA Intergenic Intergenic -82595 ENSMUSG00000082476.1 ENSMUSG00000082476 ENSMUST00000118824 Gm12242 processed_pseudogene Interval_86030 chr19 35095943 35096229 + 0 NA Intergenic Intergenic -33442 ENSMUSG00000117973.1 ENSMUSG00000117973 ENSMUST00000238087 Gm50140 lincRNA Interval_138457 chr6 88372631 88373100 + 0 NA intron (ENSMUSG00000033216.9, intron 1 of 3) protein_coding-intron (ENSMUSG00000033216.9, intron 2 of 6) -19259 ENSMUSG00000107472.1 ENSMUSG00000107472 ENSMUST00000203631 Gm44265 sense_intronic Interval_35041 chr12 16828396 16828935 + 0 NA intron (ENSMUSG00000057469.8, intron 9 of 9) protein_coding-intron (ENSMUSG00000057469.8, intron 9 of 9) 8404 ENSMUSG00000057469.8 ENSMUSG00000057469 ENSMUST00000221600 E2f6 protein_coding Interval_16226 chr10 61534019 61536263 + 0 NA intron (ENSMUSG00000037151.8, intron 3 of 4) protein_coding-intron (ENSMUSG00000037151.8, intron 3 of 4) -24556 ENSMUSG00000112710.1 ENSMUSG00000112710 ENSMUST00000219782 Gm17829 processed_pseudogene Interval_69815 chr16 96882400 96882725 + 0 NA intron (ENSMUSG00000050272.10, intron 3 of 32) protein_coding-intron (ENSMUSG00000050272.10, intron 3 of 32) -36170 ENSMUSG00000117324.1 ENSMUSG00000117324 ENSMUST00000232718 Gm32432 antisense Interval_44209 chr13 42144553 42144923 + 0 NA intron (ENSMUSG00000021366.8, intron 3 of 3) protein_coding-intron (ENSMUSG00000021366.8, intron 3 of 8) -19584 ENSMUSG00000021366.8 ENSMUSG00000021366 ENSMUST00000220801 Hivep1 protein_coding Interval_32842 chr11 111766553 111766731 + 0 NA Intergenic Intergenic 34234 ENSMUSG00000086752.1 ENSMUSG00000086752 ENSMUST00000124855 Gm11674 lincRNA Interval_18748 chr10 89902721 89902917 + 0 NA intron (ENSMUSG00000058589.14, intron 1 of 16) protein_coding-intron (ENSMUSG00000058589.14, intron 1 of 17) 29310 ENSMUSG00000058589.14 ENSMUSG00000058589 ENSMUST00000183024 Anks1b protein_coding Interval_105875 chr3 89862547 89865887 + 0 NA exon (ENSMUSG00000027947.11, exon 10 of 10) protein_coding-exon (ENSMUSG00000027947.11, exon 10 of 10) 26328 ENSMUSG00000046280.9 ENSMUSG00000046280 ENSMUST00000197454 She protein_coding Interval_150310 chr7 109528309 109528756 + 0 NA intron (ENSMUSG00000031024.13, intron 13 of 18) protein_coding-intron (ENSMUSG00000031024.13, intron 14 of 19) 7252 ENSMUSG00000077575.1 ENSMUSG00000077575 ENSMUST00000104387 Gm24888 snoRNA Interval_7596 chr1 132410197 132411470 + 0 NA Intergenic Intergenic 29704 ENSMUSG00000090079.1 ENSMUSG00000090079 ENSMUST00000159257 Gm15849 antisense Interval_64853 chr16 16559363 16560590 + 0 NA promoter-TSS (ENSMUSG00000022788.16) protein_coding-promoter-TSS (ENSMUSG00000022788.16) 70 ENSMUSG00000022788.16 ENSMUSG00000022788 ENSMUST00000161624 Fgd4 protein_coding Interval_128040 chr5 110444602 110445030 + 0 NA intron (ENSMUSG00000043323.17, intron 1 of 2) protein_coding-intron (ENSMUSG00000043323.17, intron 1 of 18) -3173 ENSMUSG00000105482.1 ENSMUSG00000105482 ENSMUST00000196305 Gm42596 antisense Interval_172939 chrX 56791052 56791897 + 0 NA TTS (ENSMUSG00000023092.16) protein_coding-TTS (ENSMUSG00000023092.16) 11655 ENSMUSG00000023092.16 ENSMUSG00000023092 ENSMUST00000153401 Fhl1 protein_coding Interval_63365 chr15 100627041 100628972 + 0 NA intron (ENSMUSG00000053559.13, intron 2 of 3) protein_coding-intron (ENSMUSG00000053559.13, intron 2 of 3) 7553 ENSMUSG00000053559.13 ENSMUSG00000053559 ENSMUST00000230517 Smagp protein_coding Interval_11712 chr1 184826971 184827404 + 0 NA promoter-TSS (ENSMUSG00000073481.9) protein_coding-promoter-TSS (ENSMUSG00000073481.9) 70 ENSMUSG00000073481.9 ENSMUSG00000073481 ENSMUST00000160982 Mtarc2 protein_coding Interval_90758 chr2 32335856 32336157 + 0 NA exon (ENSMUSG00000026825.17, exon 8 of 23) protein_coding-exon (ENSMUSG00000026825.17, exon 8 of 23) 17296 ENSMUSG00000026825.17 ENSMUSG00000026825 ENSMUST00000139238 Dnm1 protein_coding Interval_68558 chr16 78636543 78637216 + 0 NA Intergenic Intergenic 12132 ENSMUSG00000093988.1 ENSMUSG00000093988 ENSMUST00000083459 Gm24861 snRNA Interval_122512 chr5 23499288 23499766 + 0 NA exon (ENSMUSG00000029004.15, exon 22 of 26) protein_coding-exon (ENSMUSG00000029004.15, exon 22 of 26) -11804 ENSMUSG00000088170.1 ENSMUSG00000088170 ENSMUST00000157545 Gm25219 misc_RNA Interval_126800 chr5 93018315 93020209 + 0 NA Intergenic Intergenic -6123 ENSMUSG00000089018.1 ENSMUSG00000089018 ENSMUST00000158393 Gm25521 snRNA Interval_76583 chr17 81699066 81699800 + 0 NA intron (ENSMUSG00000054640.15, intron 1 of 11) protein_coding-intron (ENSMUSG00000054640.15, intron 1 of 10) 38944 ENSMUSG00000054640.15 ENSMUSG00000054640 ENSMUST00000234923 Slc8a1 protein_coding Interval_78150 chr18 9370209 9370745 + 0 NA intron (ENSMUSG00000024286.8, intron 2 of 8) protein_coding-intron (ENSMUSG00000024286.8, intron 3 of 9) 65842 ENSMUSG00000117644.1 ENSMUSG00000117644 ENSMUST00000234891 Gm50053 processed_pseudogene Interval_29476 chr11 84239561 84239853 + 0 NA intron (ENSMUSG00000020532.18, intron 11 of 55) protein_coding-intron (ENSMUSG00000020532.18, intron 9 of 53) 50114 ENSMUSG00000103122.1 ENSMUSG00000103122 ENSMUST00000194891 Gm37391 TEC Interval_5436 chr1 88760414 88761560 + 0 NA Intergenic Intergenic 6097 ENSMUSG00000097398.2 ENSMUSG00000097398 ENSMUST00000180596 Platr5 lincRNA Interval_17954 chr10 81050568 81051983 + 0 NA exon (ENSMUSG00000004937.6, exon 3 of 12) protein_coding-exon (ENSMUSG00000004937.6, exon 3 of 12) 8869 ENSMUSG00000004937.6 ENSMUSG00000004937 ENSMUST00000220202 Sgta protein_coding Interval_168078 chr9 75978810 75979794 + 0 NA intron (ENSMUSG00000097836.1, intron 2 of 4) antisense-intron (ENSMUSG00000097836.1, intron 2 of 4) -8275 ENSMUSG00000093025.1 ENSMUSG00000093025 ENSMUST00000175284 Gm25300 snRNA Interval_72428 chr17 29754427 29754893 + 0 NA Intergenic Intergenic 37588 ENSMUSG00000117434.1 ENSMUSG00000117434 ENSMUST00000234637 1810014P07Rik bidirectional_promoter_lncRNA Interval_45193 chr13 53118501 53121520 + 0 NA intron (ENSMUSG00000021464.14, intron 5 of 8) protein_coding-intron (ENSMUSG00000021464.14, intron 5 of 8) 91092 ENSMUSG00000112952.1 ENSMUSG00000112952 ENSMUST00000222184 Gm48336 lincRNA Interval_165426 chr9 47754418 47755540 + 0 NA intron (ENSMUSG00000032076.20, intron 1 of 8) protein_coding-intron (ENSMUSG00000032076.20, intron 1 of 8) -16162 ENSMUSG00000110959.1 ENSMUSG00000110959 ENSMUST00000214736 Gm47198 TEC Interval_137651 chr6 77632439 77632631 + 0 NA intron (ENSMUSG00000063063.12, intron 6 of 7) protein_coding-intron (ENSMUSG00000063063.12, intron 6 of 17) -44054 ENSMUSG00000107707.1 ENSMUSG00000107707 ENSMUST00000204098 Gm44286 TEC Interval_162063 chr8 124830004 124830747 + 0 NA exon (ENSMUSG00000036913.15, exon 10 of 11) protein_coding-exon (ENSMUSG00000036913.15, exon 10 of 11) -1323 ENSMUSG00000090118.1 ENSMUSG00000090118 ENSMUST00000161868 Gm16163 processed_transcript Interval_71125 chr17 19103595 19104634 + 0 NA Intergenic Intergenic -37354 ENSMUSG00000093533.3 ENSMUSG00000093533 ENSMUST00000177481 Vmn2r127 polymorphic_pseudogene Interval_105556 chr3 87720631 87720824 + 0 NA intron (ENSMUSG00000041977.18, intron 20 of 38) protein_coding-intron (ENSMUSG00000041977.18, intron 20 of 39) 20321 ENSMUSG00000023084.11 ENSMUSG00000023084 ENSMUST00000174208 Lrrc71 protein_coding Interval_130528 chr5 128585886 128586178 + 0 NA promoter-TSS (ENSMUSG00000072591.10) lincRNA-promoter-TSS (ENSMUSG00000072591.10) 11924 ENSMUSG00000105059.1 ENSMUSG00000105059 ENSMUST00000199981 Gm42498 TEC Interval_133587 chr6 7211650 7211896 + 0 NA Intergenic Intergenic 17501 ENSMUSG00000099178.1 ENSMUSG00000099178 ENSMUST00000183839 Gm8669 processed_pseudogene Interval_118533 chr4 132335489 132335704 + 0 NA intron (ENSMUSG00000028896.13, intron 6 of 10) protein_coding-intron (ENSMUSG00000028896.13, intron 6 of 10) -6102 ENSMUSG00000028898.15 ENSMUSG00000028898 ENSMUST00000141317 Trnau1ap protein_coding Interval_22463 chr11 10511148 10512559 + 0 NA Intergenic Intergenic -134771 ENSMUSG00000084045.1 ENSMUSG00000084045 ENSMUST00000118697 Gm11997 processed_pseudogene Interval_115424 chr4 98840512 98841500 + 0 NA Intergenic Intergenic -14608 ENSMUSG00000084188.1 ENSMUSG00000084188 ENSMUST00000117920 Gm12851 processed_pseudogene Interval_160181 chr8 106985318 106985664 + 0 NA intron (ENSMUSG00000041308.6, intron 2 of 6) protein_coding-intron (ENSMUSG00000041308.6, intron 2 of 5) 24120 ENSMUSG00000088969.1 ENSMUSG00000088969 ENSMUST00000158344 Gm22085 snRNA Interval_114286 chr4 70664192 70665073 + 0 NA Intergenic Intergenic -129704 ENSMUSG00000039270.9 ENSMUSG00000039270 ENSMUST00000037881 Megf9 protein_coding Interval_146107 chr7 43942164 43942938 + 0 NA promoter-TSS (ENSMUSG00000060161.9) transcribed_unprocessed_pseudogene-promoter-TSS (ENSMUSG00000060161.9) -111 ENSMUSG00000060161.9 ENSMUSG00000060161 ENSMUST00000078897 Klk1b7-ps transcribed_unprocessed_pseudogene Interval_92640 chr2 61802774 61803978 + 0 NA intron (ENSMUSG00000035033.15, intron 1 of 1) protein_coding-intron (ENSMUSG00000035033.15, intron 1 of 1) 446 ENSMUSG00000035033.15 ENSMUSG00000035033 ENSMUST00000131538 Tbr1 protein_coding Interval_6253 chr1 104815154 104815776 + 0 NA intron (ENSMUSG00000050840.8, intron 1 of 11) protein_coding-intron (ENSMUSG00000050840.8, intron 1 of 11) 39351 ENSMUSG00000103991.1 ENSMUSG00000103991 ENSMUST00000191819 Gm38031 TEC Interval_155627 chr8 35279970 35280214 + 0 NA Intergenic Intergenic -34613 ENSMUSG00000109688.1 ENSMUSG00000109688 ENSMUST00000211189 Gm34597 lincRNA Interval_78631 chr18 15901997 15902281 + 0 NA Intergenic Intergenic 27478 ENSMUSG00000089454.1 ENSMUSG00000089454 ENSMUST00000158829 Gm24228 snoRNA Interval_12825 chr10 5859588 5859984 + 0 NA intron (ENSMUSG00000019775.17, intron 2 of 4) protein_coding-intron (ENSMUSG00000019775.17, intron 4 of 6) -44031 ENSMUSG00000019774.8 ENSMUSG00000019774 ENSMUST00000145687 Mtrf1l protein_coding Interval_94274 chr2 87342909 87343159 + 0 NA Intergenic Intergenic 9232 ENSMUSG00000081907.1 ENSMUSG00000081907 ENSMUST00000117332 Gm13731 processed_pseudogene Interval_41618 chr12 117039382 117039901 + 0 NA intron (ENSMUSG00000056553.14, intron 12 of 22) protein_coding-intron (ENSMUSG00000056553.14, intron 12 of 22) 111574 ENSMUSG00000099907.1 ENSMUSG00000099907 ENSMUST00000186114 Gm10421 processed_transcript Interval_23407 chr11 22301539 22301859 + 0 NA intron (ENSMUSG00000042302.14, intron 2 of 4) protein_coding-intron (ENSMUSG00000042302.14, intron 2 of 4) -14904 ENSMUSG00000042302.14 ENSMUSG00000042302 ENSMUST00000137594 Ehbp1 protein_coding Interval_138196 chr6 86128228 86129112 + 0 NA Intergenic Intergenic -18482 ENSMUSG00000107857.1 ENSMUSG00000107857 ENSMUST00000203685 Gm19596 unprocessed_pseudogene Interval_99193 chr2 157930108 157930318 + 0 NA intron (ENSMUSG00000037843.6, intron 1 of 3) protein_coding-intron (ENSMUSG00000037843.6, intron 1 of 3) 15560 ENSMUSG00000037843.6 ENSMUSG00000037843 ENSMUST00000109523 Vstm2l protein_coding Interval_118445 chr4 131658042 131658343 + 0 NA intron (ENSMUSG00000087171.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000087171.1, intron 2 of 2) 13949 ENSMUSG00000087171.1 ENSMUSG00000087171 ENSMUST00000138697 Gm12962 lincRNA Interval_119997 chr4 141295985 141296308 + 0 NA Intergenic Intergenic 17707 ENSMUSG00000085395.1 ENSMUSG00000085395 ENSMUST00000142429 Gm13056 lincRNA Interval_5026 chr1 84379170 84380262 + 0 NA intron (ENSMUSG00000036766.12, intron 12 of 12) protein_coding-intron (ENSMUSG00000036766.12, intron 12 of 12) 15683 ENSMUSG00000104396.1 ENSMUSG00000104396 ENSMUST00000191700 Gm37959 TEC Interval_63503 chr15 101502933 101503617 + 0 NA promoter-TSS (ENSMUSG00000116107.1) processed_pseudogene-promoter-TSS (ENSMUSG00000116107.1) -440 ENSMUSG00000116107.1 ENSMUSG00000116107 ENSMUST00000229735 Gm49423 processed_pseudogene Interval_144143 chr7 19628025 19629780 + 0 NA promoter-TSS (ENSMUSG00000002983.17) protein_coding-promoter-TSS (ENSMUSG00000002983.17) 346 ENSMUSG00000002983.17 ENSMUSG00000002983 ENSMUST00000141586 Relb protein_coding Interval_137978 chr6 83892866 83894384 + 0 NA intron (ENSMUSG00000030016.14, intron 1 of 3) protein_coding-intron (ENSMUSG00000030016.14, intron 1 of 3) -3334 ENSMUSG00000107991.1 ENSMUSG00000107991 ENSMUST00000204303 Gm43919 processed_pseudogene Interval_59072 chr15 43141181 43142087 + 0 NA intron (ENSMUSG00000051920.7, intron 2 of 5) protein_coding-intron (ENSMUSG00000051920.7, intron 2 of 5) 29192 ENSMUSG00000051920.7 ENSMUSG00000051920 ENSMUST00000226402 Rspo2 protein_coding Interval_30991 chr11 97618247 97618648 + 0 NA exon (ENSMUSG00000085860.1, exon 3 of 4) processed_transcript-exon (ENSMUSG00000085860.1, exon 3 of 4) 3465 ENSMUSG00000085860.1 ENSMUSG00000085860 ENSMUST00000145262 2410003L11Rik processed_transcript Interval_162326 chr8 127125418 127126803 + 0 NA intron (ENSMUSG00000025812.18, intron 1 of 17) protein_coding-intron (ENSMUSG00000025812.18, intron 1 of 23) -45294 ENSMUSG00000025812.18 ENSMUSG00000025812 ENSMUST00000159940 Pard3 protein_coding Interval_128524 chr5 113815893 113816207 + 0 NA Intergenic Intergenic -1175 ENSMUSG00000104972.1 ENSMUSG00000104972 ENSMUST00000198920 Gm19931 processed_pseudogene Interval_61974 chr15 85596797 85597649 + 0 NA Intergenic Intergenic 16971 ENSMUSG00000097209.2 ENSMUSG00000097209 ENSMUST00000180441 AU022754 antisense Interval_110176 chr3 153968631 153969710 + 0 NA Intergenic Intergenic -31361 ENSMUSG00000062908.12 ENSMUSG00000062908 ENSMUST00000135724 Acadm protein_coding Interval_155664 chr8 35865287 35866160 + 0 NA exon (ENSMUSG00000109761.1, exon 3 of 3) lincRNA-exon (ENSMUSG00000109761.1, exon 3 of 3) 17234 ENSMUSG00000109761.1 ENSMUSG00000109761 ENSMUST00000210717 5430403N17Rik lincRNA Interval_86362 chr19 38970956 38971315 + 0 NA TTS (ENSMUSG00000025001.11) protein_coding-TTS (ENSMUSG00000025001.11) -5512 ENSMUSG00000114610.1 ENSMUSG00000114610 ENSMUST00000225458 Cyp2c52-ps unprocessed_pseudogene Interval_151117 chr7 118652411 118653373 + 0 NA intron (ENSMUSG00000030650.18, intron 11 of 20) protein_coding-intron (ENSMUSG00000030650.18, intron 8 of 17) 30378 ENSMUSG00000030650.18 ENSMUSG00000030650 ENSMUST00000057320 Tmc5 protein_coding Interval_130089 chr5 124195190 124195617 + 0 NA promoter-TSS (ENSMUSG00000089842.2) antisense-promoter-TSS (ENSMUSG00000089842.2) -239 ENSMUSG00000089842.2 ENSMUSG00000089842 ENSMUST00000198466 Pitpnm2os2 antisense Interval_33784 chr11 118476552 118477364 + 0 NA promoter-TSS (ENSMUSG00000033857.12) protein_coding-promoter-TSS (ENSMUSG00000033857.12) 17 ENSMUSG00000033857.12 ENSMUSG00000033857 ENSMUST00000168689 Engase protein_coding Interval_63225 chr15 99818466 99820217 + 0 NA TTS (ENSMUSG00000023022.14) protein_coding-TTS (ENSMUSG00000023022.14) 321 ENSMUSG00000090500.1 ENSMUSG00000090500 ENSMUST00000169887 Gm17057 antisense Interval_143775 chr7 16236326 16237996 + 0 NA exon (ENSMUSG00000074361.11, exon 2 of 2) protein_coding-exon (ENSMUSG00000074361.11, exon 2 of 2) -2297 ENSMUSG00000080413.1 ENSMUSG00000080413 ENSMUST00000116763 Gm26473 snRNA Interval_30555 chr11 95087174 95088759 + 0 NA Intergenic Intergenic -11169 ENSMUSG00000001507.16 ENSMUSG00000001507 ENSMUST00000145671 Itga3 protein_coding Interval_65886 chr16 30055503 30056239 + 0 NA Intergenic Intergenic -10467 ENSMUSG00000022528.8 ENSMUSG00000022528 ENSMUST00000161839 Hes1 protein_coding Interval_71272 chr17 21798255 21798501 + 0 NA Intergenic Intergenic 3280 ENSMUSG00000049202.5 ENSMUSG00000049202 ENSMUST00000057521 4930515G13Rik pseudogene Interval_100338 chr2 168479215 168480425 + 0 NA exon (ENSMUSG00000027544.16, exon 10 of 10) protein_coding-exon (ENSMUSG00000027544.16, exon 10 of 10) -61246 ENSMUSG00000082239.1 ENSMUSG00000082239 ENSMUST00000119539 Gm14234 processed_pseudogene Interval_12384 chr1 192806677 192807447 + 0 NA Intergenic Intergenic 14065 ENSMUSG00000103874.1 ENSMUSG00000103874 ENSMUST00000195130 Gm38360 processed_pseudogene Interval_94867 chr2 98329690 98330410 + 0 NA Intergenic Intergenic 38647 ENSMUSG00000080802.1 ENSMUSG00000080802 ENSMUST00000119552 Gm13804 processed_pseudogene Interval_30151 chr11 89865830 89866316 + 0 NA Intergenic Intergenic -24807 ENSMUSG00000047773.15 ENSMUSG00000047773 ENSMUST00000207171 Ankfn1 protein_coding Interval_170943 chr9 112793366 112793700 + 0 NA Intergenic Intergenic 271004 ENSMUSG00000096353.1 ENSMUSG00000096353 ENSMUST00000179604 Gm24957 snoRNA Interval_92212 chr2 56765645 56766698 + 0 NA Intergenic Intergenic -19640 ENSMUSG00000098437.1 ENSMUSG00000098437 ENSMUST00000184814 Mir195b miRNA Interval_98529 chr2 153020917 153021785 + 0 NA Intergenic Intergenic -6005 ENSMUSG00000027472.14 ENSMUSG00000027472 ENSMUST00000140325 Pdrg1 protein_coding Interval_67428 chr16 48595390 48595674 + 0 NA intron (ENSMUSG00000022652.7, intron 1 of 5) protein_coding-intron (ENSMUSG00000022652.7, intron 20 of 26) 115900 ENSMUSG00000022652.7 ENSMUSG00000022652 ENSMUST00000232195 Morc1 protein_coding Interval_124881 chr5 58800325 58800521 + 0 NA Intergenic Intergenic 200570 ENSMUSG00000106509.1 ENSMUSG00000106509 ENSMUST00000198671 Gm43394 processed_pseudogene Interval_29407 chr11 83799617 83800909 + 0 NA promoter-TSS (ENSMUSG00000081342.1) processed_pseudogene-promoter-TSS (ENSMUSG00000081342.1) -201 ENSMUSG00000081342.1 ENSMUSG00000081342 ENSMUST00000122379 Gm11434 processed_pseudogene Interval_26623 chr11 59284032 59284279 + 0 NA intron (ENSMUSG00000009900.7, intron 1 of 3) protein_coding-intron (ENSMUSG00000009900.7, intron 1 of 3) 6597 ENSMUSG00000009900.7 ENSMUSG00000009900 ENSMUST00000010044 Wnt3a protein_coding Interval_79469 chr18 32132525 32134140 + 0 NA TTS (ENSMUSG00000024386.9) protein_coding-TTS (ENSMUSG00000024386.9) 4694 ENSMUSG00000024386.9 ENSMUSG00000024386 ENSMUST00000234649 Proc protein_coding Interval_157383 chr8 70001255 70002331 + 0 NA Intergenic Intergenic -5409 ENSMUSG00000036180.15 ENSMUSG00000036180 ENSMUST00000211960 Gatad2a protein_coding Interval_51001 chr14 21562422 21563332 + 0 NA intron (ENSMUSG00000021767.19, intron 2 of 5) protein_coding-intron (ENSMUSG00000021767.19, intron 2 of 16) 46002 ENSMUSG00000021767.19 ENSMUSG00000021767 ENSMUST00000226589 Kat6b protein_coding Interval_16722 chr10 67211958 67212922 + 0 NA intron (ENSMUSG00000037876.17, intron 3 of 25) protein_coding-intron (ENSMUSG00000037876.17, intron 3 of 25) 23521 ENSMUSG00000089498.1 ENSMUSG00000089498 ENSMUST00000158873 Gm26359 snRNA Interval_54886 chr14 75993694 75994168 + 0 NA intron (ENSMUSG00000067995.4, intron 4 of 7) protein_coding-intron (ENSMUSG00000067995.4, intron 4 of 7) 16934 ENSMUSG00000067995.4 ENSMUSG00000067995 ENSMUST00000088922 Gtf2f2 protein_coding Interval_93978 chr2 80431619 80431962 + 0 NA intron (ENSMUSG00000027004.3, intron 1 of 4) protein_coding-intron (ENSMUSG00000027004.3, intron 2 of 5) 6840 ENSMUSG00000027004.3 ENSMUSG00000027004 ENSMUST00000142459 Frzb protein_coding Interval_31578 chr11 101484422 101485990 + 0 NA Intergenic Intergenic 8980 ENSMUSG00000080839.1 ENSMUSG00000080839 ENSMUST00000119535 Gm11625 processed_pseudogene Interval_101737 chr3 9296272 9296447 + 0 NA Intergenic Intergenic 45757 ENSMUSG00000069114.8 ENSMUSG00000069114 ENSMUST00000155203 Zbtb10 protein_coding Interval_97136 chr2 131542512 131542806 + 0 NA Intergenic Intergenic -18955 ENSMUSG00000087524.1 ENSMUSG00000087524 ENSMUST00000146049 Gm14285 antisense Interval_155868 chr8 40449414 40449604 + 0 NA intron (ENSMUSG00000039470.15, intron 3 of 3) protein_coding-intron (ENSMUSG00000039470.15, intron 3 of 12) 25405 ENSMUSG00000039470.15 ENSMUSG00000039470 ENSMUST00000164934 Zdhhc2 protein_coding Interval_101860 chr3 10236619 10236868 + 0 NA Intergenic Intergenic 4563 ENSMUSG00000104434.1 ENSMUSG00000104434 ENSMUST00000193088 Gm37421 processed_pseudogene Interval_43762 chr13 36156302 36157219 + 0 NA intron (ENSMUSG00000021420.13, intron 2 of 7) protein_coding-intron (ENSMUSG00000021420.13, intron 1 of 6) 26288 ENSMUSG00000114371.1 ENSMUSG00000114371 ENSMUST00000224673 Gm48769 processed_pseudogene Interval_26363 chr11 57345198 57346154 + 0 NA Intergenic Intergenic -103431 ENSMUSG00000082476.1 ENSMUSG00000082476 ENSMUST00000118824 Gm12242 processed_pseudogene Interval_158573 chr8 84579132 84580488 + 0 NA intron (ENSMUSG00000034656.18, intron 27 of 48) protein_coding-intron (ENSMUSG00000034656.18, intron 25 of 46) 37374 ENSMUSG00000086067.1 ENSMUSG00000086067 ENSMUST00000127527 Gm16183 antisense Interval_106066 chr3 92179677 92180672 + 0 NA Intergenic Intergenic 9953 ENSMUSG00000105476.1 ENSMUSG00000105476 ENSMUST00000200051 Gm35439 lincRNA Interval_9537 chr1 158946155 158946361 + 0 NA intron (ENSMUSG00000073530.11, intron 1 of 21) protein_coding-intron (ENSMUSG00000073530.11, intron 1 of 21) 14123 ENSMUSG00000073530.11 ENSMUSG00000073530 ENSMUST00000159892 Pappa2 protein_coding Interval_123955 chr5 36849686 36850460 + 0 NA Intergenic Intergenic -18590 ENSMUSG00000029120.10 ENSMUSG00000029120 ENSMUST00000138124 Ppp2r2c protein_coding Interval_78705 chr18 18217193 18217514 + 0 NA intron (ENSMUSG00000117574.1, intron 3 of 7) lincRNA-intron (ENSMUSG00000117574.1, intron 3 of 7) 26804 ENSMUSG00000117574.1 ENSMUSG00000117574 ENSMUST00000234831 Gm50084 lincRNA Interval_58597 chr15 36471397 36472548 + 0 NA Intergenic Intergenic 24743 ENSMUSG00000048307.8 ENSMUSG00000048307 ENSMUST00000228941 Ankrd46 protein_coding Interval_19103 chr10 94566607 94566955 + 0 NA intron (ENSMUSG00000020023.18, intron 1 of 1) protein_coding-intron (ENSMUSG00000020023.18, intron 1 of 3) 15929 ENSMUSG00000020023.18 ENSMUSG00000020023 ENSMUST00000117929 Tmcc3 protein_coding Interval_65366 chr16 21921460 21922212 + 0 NA exon (ENSMUSG00000033618.7, exon 10 of 13) protein_coding-exon (ENSMUSG00000033618.7, exon 10 of 13) 25330 ENSMUSG00000117327.1 ENSMUSG00000117327 ENSMUST00000232683 Gm6467 pseudogene Interval_57625 chr15 12900296 12901080 + 0 NA intron (ENSMUSG00000022191.16, intron 22 of 34) protein_coding-intron (ENSMUSG00000022191.16, intron 22 of 34) -55034 ENSMUSG00000115807.1 ENSMUSG00000115807 ENSMUST00000226269 Gm49100 unprocessed_pseudogene Interval_97865 chr2 144555442 144556677 + 0 NA promoter-TSS (ENSMUSG00000027429.16) protein_coding-promoter-TSS (ENSMUSG00000027429.16) -260 ENSMUSG00000027429.16 ENSMUSG00000027429 ENSMUST00000146487 Sec23b protein_coding Interval_76258 chr17 78565033 78565467 + 0 NA intron (ENSMUSG00000024076.10, intron 3 of 13) protein_coding-intron (ENSMUSG00000024076.10, intron 3 of 13) -8678 ENSMUSG00000024076.10 ENSMUSG00000024076 ENSMUST00000232864 Vit protein_coding Interval_164648 chr9 40311649 40312213 + 0 NA intron (ENSMUSG00000040111.17, intron 7 of 18) protein_coding-intron (ENSMUSG00000040111.17, intron 8 of 19) 8989 ENSMUSG00000040111.17 ENSMUSG00000040111 ENSMUST00000129940 Gramd1b protein_coding Interval_5570 chr1 89891581 89892540 + 0 NA exon (ENSMUSG00000055013.16, exon 18 of 18) protein_coding-exon (ENSMUSG00000055013.16, exon 18 of 18) 37125 ENSMUSG00000034486.8 ENSMUSG00000034486 ENSMUST00000187633 Gbx2 protein_coding Interval_52136 chr14 37000666 37000904 + 0 NA Intergenic Intergenic 23749 ENSMUSG00000114739.1 ENSMUSG00000114739 ENSMUST00000223806 Gm47885 processed_pseudogene Interval_166753 chr9 62435546 62436325 + 0 NA intron (ENSMUSG00000041729.15, intron 3 of 3) protein_coding-intron (ENSMUSG00000041729.15, intron 3 of 11) 13213 ENSMUSG00000041729.15 ENSMUSG00000041729 ENSMUST00000123379 Coro2b protein_coding Interval_79221 chr18 25822135 25822367 + 0 NA Intergenic Intergenic 2106 ENSMUSG00000087121.1 ENSMUSG00000087121 ENSMUST00000151645 Gm7847 processed_pseudogene Interval_61879 chr15 84891357 84892106 + 0 NA Intergenic Intergenic -14911 ENSMUSG00000116491.1 ENSMUSG00000116491 ENSMUST00000230387 4930513L16Rik lincRNA Interval_84921 chr19 18760842 18761634 + 0 NA intron (ENSMUSG00000024727.9, intron 1 of 18) protein_coding-intron (ENSMUSG00000024727.9, intron 1 of 38) 2613 ENSMUSG00000024727.9 ENSMUSG00000024727 ENSMUST00000237020 Trpm6 protein_coding Interval_45806 chr13 58194833 58195683 + 0 NA intron (ENSMUSG00000005312.15, intron 3 of 9) protein_coding-intron (ENSMUSG00000005312.15, intron 3 of 10) -3940 ENSMUSG00000114524.1 ENSMUSG00000114524 ENSMUST00000224851 Gm48357 sense_intronic Interval_40569 chr12 105795687 105796308 + 0 NA intron (ENSMUSG00000021111.15, intron 1 of 6) protein_coding-intron (ENSMUSG00000021111.15, intron 1 of 22) -33070 ENSMUSG00000021111.15 ENSMUSG00000021111 ENSMUST00000172089 Papola protein_coding Interval_2265 chr1 37533676 37534393 + 0 NA exon (ENSMUSG00000026110.15, exon 1 of 1) protein_coding-exon (ENSMUSG00000026110.15, exon 1 of 1) 2217 ENSMUSG00000026110.15 ENSMUSG00000026110 ENSMUST00000195598 Mgat4a protein_coding Interval_85989 chr19 34737824 34738254 + 0 NA intron (ENSMUSG00000009378.4, intron 1 of 6) protein_coding-intron (ENSMUSG00000009378.4, intron 1 of 6) -12471 ENSMUSG00000098742.1 ENSMUSG00000098742 ENSMUST00000183366 Gm27476 miRNA Interval_94318 chr2 88513066 88513737 + 0 NA Intergenic Intergenic -5150 ENSMUSG00000082882.2 ENSMUSG00000082882 ENSMUST00000121619 Olfr1186 protein_coding Interval_157380 chr8 69981892 69982144 + 0 NA intron (ENSMUSG00000036180.15, intron 1 of 12) protein_coding-intron (ENSMUSG00000036180.15, intron 1 of 12) 14366 ENSMUSG00000036180.15 ENSMUSG00000036180 ENSMUST00000211960 Gatad2a protein_coding Interval_14172 chr10 28299318 28299554 + 0 NA intron (ENSMUSG00000019889.10, intron 3 of 14) protein_coding-intron (ENSMUSG00000019889.10, intron 3 of 31) -85315 ENSMUSG00000076377.1 ENSMUSG00000076377 ENSMUST00000102422 Gm22370 miRNA Interval_37209 chr12 59797872 59798187 + 0 NA Intergenic Intergenic -77700 ENSMUSG00000112355.1 ENSMUSG00000112355 ENSMUST00000219078 Gm48285 TEC Interval_160135 chr8 106647189 106648038 + 0 NA intron (ENSMUSG00000000303.12, intron 2 of 16) protein_coding-intron (ENSMUSG00000000303.12, intron 2 of 15) -35502 ENSMUSG00000041949.6 ENSMUSG00000041949 ENSMUST00000211979 Tango6 protein_coding Interval_24867 chr11 40599855 40602359 + 0 NA Intergenic Intergenic -11611 ENSMUSG00000080835.1 ENSMUSG00000080835 ENSMUST00000119565 Gm12137 processed_pseudogene Interval_81610 chr18 62067793 62068236 + 0 NA Intergenic Intergenic -74604 ENSMUSG00000118370.1 ENSMUSG00000118370 ENSMUST00000236502 Gm41750 lincRNA Interval_72799 chr17 32239694 32240083 + 0 NA intron (ENSMUSG00000024002.18, intron 1 of 8) protein_coding-intron (ENSMUSG00000024002.18, intron 2 of 19) -2275 ENSMUSG00000116414.2 ENSMUSG00000116414 ENSMUST00000230961 Gm4432 processed_pseudogene Interval_11026 chr1 178503887 178504459 + 0 NA Intergenic Intergenic -24952 ENSMUSG00000026494.12 ENSMUSG00000026494 ENSMUST00000160789 Kif26b protein_coding Interval_34102 chr11 120654065 120654266 + 0 NA exon (ENSMUSG00000042988.10, exon 7 of 7) protein_coding-exon (ENSMUSG00000042988.10, exon 7 of 7) -4992 ENSMUSG00000053613.6 ENSMUSG00000053613 ENSMUST00000151998 Notumos antisense Interval_155396 chr8 33229622 33231429 + 0 NA Intergenic Intergenic -38229 ENSMUSG00000083557.1 ENSMUSG00000083557 ENSMUST00000119347 Gm6877 processed_pseudogene Interval_115501 chr4 99533390 99533804 + 0 NA Intergenic Intergenic 7665 ENSMUSG00000103575.1 ENSMUSG00000103575 ENSMUST00000194238 Gm37117 TEC Interval_19443 chr10 99285874 99287979 + 0 NA Intergenic Intergenic 12221 ENSMUSG00000112544.1 ENSMUSG00000112544 ENSMUST00000218105 Gm48089 lincRNA Interval_104481 chr3 66398538 66398986 + 0 NA Intergenic Intergenic 34223 ENSMUSG00000117623.1 ENSMUSG00000117623 ENSMUST00000234873 Gm50014 unitary_pseudogene Interval_121706 chr5 5514057 5515578 + 0 NA promoter-TSS (ENSMUSG00000046798.14) protein_coding-promoter-TSS (ENSMUSG00000046798.14) 95 ENSMUSG00000046798.14 ENSMUSG00000046798 ENSMUST00000134157 Cldn12 protein_coding Interval_133319 chr5 151672258 151672424 + 0 NA Intergenic Intergenic -4205 ENSMUSG00000107326.1 ENSMUSG00000107326 ENSMUST00000202359 Gm43038 unprocessed_pseudogene Interval_62568 chr15 94689821 94690011 + 0 NA intron (ENSMUSG00000063296.5, intron 2 of 2) protein_coding-intron (ENSMUSG00000063296.5, intron 2 of 7) -8530 ENSMUSG00000095169.1 ENSMUSG00000095169 ENSMUST00000103977 Gm25546 snoRNA Interval_46056 chr13 60648147 60649022 + 0 NA intron (ENSMUSG00000021559.14, intron 2 of 26) protein_coding-intron (ENSMUSG00000021559.14, intron 2 of 26) 6794 ENSMUSG00000114277.1 ENSMUSG00000114277 ENSMUST00000225897 Gm48583 processed_pseudogene Interval_67447 chr16 48750089 48750877 + 0 NA promoter-TSS (ENSMUSG00000116640.1) processed_pseudogene-promoter-TSS (ENSMUSG00000116640.1) -35 ENSMUSG00000116640.1 ENSMUSG00000116640 ENSMUST00000231404 Gm8670 processed_pseudogene Interval_96984 chr2 130267870 130269065 + 0 NA Intergenic Intergenic -7039 ENSMUSG00000080610.1 ENSMUSG00000080610 ENSMUST00000116960 Snord110 snoRNA Interval_16431 chr10 62845217 62845667 + 0 NA intron (ENSMUSG00000047146.17, intron 3 of 12) protein_coding-intron (ENSMUSG00000047146.17, intron 2 of 10) 14552 ENSMUSG00000112309.1 ENSMUSG00000112309 ENSMUST00000220243 Gm48353 TEC Interval_127943 chr5 109682339 109683620 + 0 NA intron (ENSMUSG00000072763.2, intron 1 of 3) protein_coding-intron (ENSMUSG00000072763.2, intron 1 of 3) 8062 ENSMUSG00000072763.2 ENSMUSG00000072763 ENSMUST00000092720 5430403G16Rik protein_coding Interval_107271 chr3 105116288 105116961 + 0 NA Intergenic Intergenic 49780 ENSMUSG00000051788.4 ENSMUSG00000051788 ENSMUST00000070584 4930564D02Rik protein_coding Interval_166990 chr9 64350791 64352088 + 0 NA Intergenic Intergenic -10182 ENSMUSG00000032396.17 ENSMUSG00000032396 ENSMUST00000128129 Dis3l protein_coding Interval_32620 chr11 109221769 109222130 + 0 NA Intergenic Intergenic 25016 ENSMUSG00000020599.13 ENSMUSG00000020599 ENSMUST00000106704 Rgs9 protein_coding Interval_46471 chr13 66418163 66419513 + 0 NA intron (ENSMUSG00000074832.11, intron 3 of 4) protein_coding-intron (ENSMUSG00000074832.11, intron 3 of 4) 6356 ENSMUSG00000114261.1 ENSMUSG00000114261 ENSMUST00000224573 Gm48243 processed_pseudogene Interval_100994 chr2 174014755 174015816 + 0 NA Intergenic Intergenic -30594 ENSMUSG00000081700.1 ENSMUSG00000081700 ENSMUST00000120437 Atp5k-ps2 processed_pseudogene Interval_61120 chr15 79357040 79358271 + 0 NA TTS (ENSMUSG00000042622.14) protein_coding-TTS (ENSMUSG00000042622.14) 9253 ENSMUSG00000042622.14 ENSMUSG00000042622 ENSMUST00000229285 Maff protein_coding Interval_128522 chr5 113811743 113812308 + 0 NA Intergenic Intergenic -5200 ENSMUSG00000104972.1 ENSMUSG00000104972 ENSMUST00000198920 Gm19931 processed_pseudogene Interval_106542 chr3 97117814 97118748 + 0 NA Intergenic Intergenic 7832 ENSMUSG00000106324.1 ENSMUSG00000106324 ENSMUST00000199013 Gm43222 processed_pseudogene Interval_73140 chr17 35049711 35050349 + 0 NA promoter-TSS (ENSMUSG00000007041.9) protein_coding-promoter-TSS (ENSMUSG00000007041.9) 812 ENSMUSG00000096022.1 ENSMUSG00000096022 ENSMUST00000158934 Gm23421 snRNA Interval_121529 chr5 3270810 3271009 + 0 NA TTS (ENSMUSG00000106658.1) lincRNA-TTS (ENSMUSG00000106658.1) 590 ENSMUSG00000106658.1 ENSMUSG00000106658 ENSMUST00000197473 Gm36548 lincRNA Interval_105555 chr3 87698380 87698844 + 0 NA intron (ENSMUSG00000041977.18, intron 10 of 38) protein_coding-intron (ENSMUSG00000041977.18, intron 10 of 39) 42436 ENSMUSG00000023084.11 ENSMUSG00000023084 ENSMUST00000174208 Lrrc71 protein_coding Interval_82846 chr18 77456504 77456713 + 0 NA exon (ENSMUSG00000025427.15, exon 8 of 8) protein_coding-exon (ENSMUSG00000025427.15, exon 8 of 8) 10540 ENSMUSG00000025427.15 ENSMUSG00000025427 ENSMUST00000182146 Rnf165 protein_coding Interval_15018 chr10 41967986 41968233 + 0 NA intron (ENSMUSG00000071324.11, intron 7 of 16) protein_coding-intron (ENSMUSG00000071324.11, intron 8 of 17) -50107 ENSMUSG00000111103.1 ENSMUSG00000111103 ENSMUST00000214172 1700016J18Rik bidirectional_promoter_lncRNA Interval_29202 chr11 81512515 81512753 + 0 NA intron (ENSMUSG00000020704.13, intron 1 of 9) protein_coding-intron (ENSMUSG00000020704.13, intron 1 of 9) 60839 ENSMUSG00000080980.1 ENSMUSG00000080980 ENSMUST00000117522 1700071K01Rik processed_pseudogene Interval_22402 chr11 9592225 9592577 + 0 NA intron (ENSMUSG00000004668.14, intron 55 of 61) protein_coding-intron (ENSMUSG00000004668.14, intron 55 of 61) 113222 ENSMUSG00000104137.1 ENSMUSG00000104137 ENSMUST00000195362 Gm36954 TEC Interval_99715 chr2 164451804 164452254 + 0 NA Intergenic Intergenic -5059 ENSMUSG00000045503.16 ENSMUSG00000045503 ENSMUST00000125086 Sys1 protein_coding Interval_61277 chr15 80491478 80491991 + 0 NA intron (ENSMUSG00000050439.7, intron 5 of 6) protein_coding-intron (ENSMUSG00000050439.7, intron 4 of 5) 15842 ENSMUSG00000116345.1 ENSMUSG00000116345 ENSMUST00000230279 Gm19141 processed_pseudogene Interval_19571 chr10 103391850 103392045 + 0 NA intron (ENSMUSG00000019894.14, intron 2 of 2) protein_coding-intron (ENSMUSG00000019894.14, intron 3 of 12) -1503 ENSMUSG00000019894.14 ENSMUSG00000019894 ENSMUST00000219936 Slc6a15 protein_coding Interval_58060 chr15 27539843 27540125 + 0 NA intron (ENSMUSG00000022265.7, intron 1 of 11) protein_coding-intron (ENSMUSG00000022265.7, intron 1 of 11) -31463 ENSMUSG00000022265.7 ENSMUSG00000022265 ENSMUST00000134004 Ank protein_coding Interval_152336 chr7 131988467 131989712 + 0 NA exon (ENSMUSG00000040125.4, exon 3 of 3) protein_coding-exon (ENSMUSG00000040125.4, exon 3 of 3) 22629 ENSMUSG00000040125.4 ENSMUSG00000040125 ENSMUST00000045840 Gpr26 protein_coding Interval_5322 chr1 87550981 87551244 + 0 NA intron (ENSMUSG00000026259.14, intron 1 of 14) protein_coding-intron (ENSMUSG00000026259.14, intron 1 of 14) -6420 ENSMUSG00000090994.1 ENSMUSG00000090994 ENSMUST00000172004 Gm6153 processed_pseudogene Interval_133652 chr6 8086749 8087050 + 0 NA intron (ENSMUSG00000068794.7, intron 19 of 34) protein_coding-intron (ENSMUSG00000068794.7, intron 19 of 34) 93275 ENSMUSG00000068794.7 ENSMUSG00000068794 ENSMUST00000213284 Col28a1 protein_coding Interval_104459 chr3 65957116 65959046 + 0 NA promoter-TSS (ENSMUSG00000027829.15) protein_coding-promoter-TSS (ENSMUSG00000027829.15) 88 ENSMUSG00000027829.15 ENSMUSG00000027829 ENSMUST00000148623 Ccnl1 protein_coding Interval_39727 chr12 95617360 95618488 + 0 NA Intergenic Intergenic -1894 ENSMUSG00000064412.1 ENSMUSG00000064412 ENSMUST00000082478 Gm22246 snRNA Interval_174160 chrX 136957773 136958501 + 0 NA promoter-TSS (ENSMUSG00000089996.6) protein_coding-promoter-TSS (ENSMUSG00000089996.6) 17360 ENSMUSG00000089996.6 ENSMUSG00000089996 ENSMUST00000180194 Tmsb15b2 protein_coding Interval_141642 chr6 131719234 131719598 + 0 NA Intergenic Intergenic -29353 ENSMUSG00000063478.2 ENSMUSG00000063478 ENSMUST00000080619 Tas2r114 protein_coding Interval_162662 chr9 7616284 7616471 + 0 NA Intergenic Intergenic -11854 ENSMUSG00000018620.3 ENSMUSG00000018620 ENSMUST00000034487 Mmp20 protein_coding Interval_73294 chr17 36020513 36020735 + 0 NA promoter-TSS (ENSMUSG00000053835.17) protein_coding-promoter-TSS (ENSMUSG00000053835.17) -99 ENSMUSG00000053835.17 ENSMUSG00000053835 ENSMUST00000174063 H2-T24 protein_coding Interval_108522 chr3 127939320 127940034 + 0 NA intron (ENSMUSG00000104763.1, intron 3 of 4) lincRNA-intron (ENSMUSG00000104763.1, intron 3 of 4) 23505 ENSMUSG00000104763.1 ENSMUSG00000104763 ENSMUST00000198240 9830132P13Rik lincRNA Interval_111003 chr4 11140950 11142213 + 0 NA Intergenic Intergenic -3129 ENSMUSG00000081490.1 ENSMUSG00000081490 ENSMUST00000120175 Gm11830 processed_pseudogene Interval_139474 chr6 100411781 100412733 + 0 NA Intergenic Intergenic 82557 ENSMUSG00000087929.1 ENSMUSG00000087929 ENSMUST00000157304 Gm23234 snoRNA Interval_123080 chr5 29457990 29458956 + 0 NA TTS (ENSMUSG00000001569.10) protein_coding-TTS (ENSMUSG00000001569.10) 17155 ENSMUSG00000001569.10 ENSMUSG00000001569 ENSMUST00000146347 Nom1 protein_coding Interval_84281 chr19 9717682 9718312 + 0 NA Intergenic Intergenic -109120 ENSMUSG00000117756.1 ENSMUSG00000117756 ENSMUST00000235774 Gm50320 processed_pseudogene Interval_90928 chr2 33515531 33516011 + 0 NA Intergenic Intergenic 25989 ENSMUSG00000086939.1 ENSMUSG00000086939 ENSMUST00000134014 Gm13530 lincRNA Interval_67951 chr16 60604723 60606960 + 0 NA promoter-TSS (ENSMUSG00000055540.15) protein_coding-promoter-TSS (ENSMUSG00000055540.15) -622 ENSMUSG00000055540.15 ENSMUSG00000055540 ENSMUST00000162129 Epha6 protein_coding Interval_71654 chr17 25171385 25172506 + 0 NA TTS (ENSMUSG00000059562.14) protein_coding-TTS (ENSMUSG00000059562.14) 3526 ENSMUSG00000114245.1 ENSMUSG00000114245 ENSMUST00000224277 Gm38655 protein_coding Interval_67895 chr16 58839600 58839997 + 0 NA Intergenic Intergenic -13024 ENSMUSG00000060663.6 ENSMUSG00000060663 ENSMUST00000079955 Olfr175 protein_coding Interval_20506 chr10 118052288 118053140 + 0 NA Intergenic Intergenic 47776 ENSMUSG00000102896.1 ENSMUSG00000102896 ENSMUST00000193027 Gm37852 TEC Interval_65013 chr16 17865528 17866587 + 0 NA intron (ENSMUSG00000003166.20, intron 3 of 3) protein_coding-intron (ENSMUSG00000003166.20, intron 2 of 9) 25614 ENSMUSG00000092470.1 ENSMUSG00000092470 ENSMUST00000150068 Gm20518 protein_coding Interval_64313 chr16 10416999 10417277 + 0 NA intron (ENSMUSG00000022503.10, intron 2 of 5) protein_coding-intron (ENSMUSG00000022503.10, intron 3 of 10) 5074 ENSMUSG00000022503.10 ENSMUSG00000022503 ENSMUST00000143617 Nubp1 protein_coding Interval_174588 chrX 159522163 159523244 + 0 NA Intergenic Intergenic -44835 ENSMUSG00000044150.12 ENSMUSG00000044150 ENSMUST00000154694 Bclaf3 protein_coding Interval_26258 chr11 55468004 55470309 + 0 NA promoter-TSS (ENSMUSG00000018583.5) protein_coding-promoter-TSS (ENSMUSG00000018583.5) -562 ENSMUSG00000018583.5 ENSMUSG00000018583 ENSMUST00000151790 G3bp1 protein_coding Interval_20755 chr10 120762921 120763199 + 0 NA intron (ENSMUSG00000111907.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000111907.1, intron 1 of 1) -2672 ENSMUSG00000044544.4 ENSMUSG00000044544 ENSMUST00000056994 4921513I03Rik lincRNA Interval_101323 chr2 180445406 180446154 + 0 NA Intergenic Intergenic -10554 ENSMUSG00000038963.15 ENSMUSG00000038963 ENSMUST00000128367 Slco4a1 protein_coding Interval_42746 chr13 18868043 18869356 + 0 NA Intergenic Intergenic -53878 ENSMUSG00000089046.1 ENSMUSG00000089046 ENSMUST00000158421 Gm26172 snoRNA Interval_88854 chr2 11686770 11686941 + 0 NA intron (ENSMUSG00000026770.5, intron 7 of 7) protein_coding-intron (ENSMUSG00000026770.5, intron 7 of 7) 3729 ENSMUSG00000104101.1 ENSMUSG00000104101 ENSMUST00000193001 Gm37881 TEC Interval_29846 chr11 87246930 87247222 + 0 NA intron (ENSMUSG00000046442.4, intron 2 of 3) protein_coding-intron (ENSMUSG00000046442.4, intron 2 of 6) 57002 ENSMUSG00000018548.15 ENSMUSG00000018548 ENSMUST00000154138 Trim37 protein_coding Interval_166953 chr9 64122374 64123059 + 0 NA intron (ENSMUSG00000032401.15, intron 7 of 12) protein_coding-intron (ENSMUSG00000032401.15, intron 7 of 13) 5544 ENSMUSG00000032401.15 ENSMUSG00000032401 ENSMUST00000132018 Lctl protein_coding Interval_111598 chr4 24289848 24290620 + 0 NA Intergenic Intergenic 52134 ENSMUSG00000083154.1 ENSMUSG00000083154 ENSMUST00000117711 Gm11892 processed_pseudogene Interval_85615 chr19 29092386 29092573 + 0 NA Intergenic Intergenic -2224 ENSMUSG00000118320.1 ENSMUSG00000118320 ENSMUST00000236843 Gm50425 processed_pseudogene Interval_168174 chr9 77756345 77756568 + 0 NA intron (ENSMUSG00000032350.9, intron 1 of 15) protein_coding-intron (ENSMUSG00000032350.9, intron 1 of 15) -9686 ENSMUSG00000032350.9 ENSMUSG00000032350 ENSMUST00000216848 Gclc protein_coding Interval_147399 chr7 66472188 66472463 + 0 NA Intergenic Intergenic 30439 ENSMUSG00000109114.1 ENSMUSG00000109114 ENSMUST00000208297 Gm44753 lincRNA Interval_152719 chr7 136813651 136814731 + 0 NA Intergenic Intergenic 3282 ENSMUSG00000110126.1 ENSMUSG00000110126 ENSMUST00000211473 Gm9347 processed_pseudogene Interval_23671 chr11 24282735 24282981 + 0 NA Intergenic Intergenic -80234 ENSMUSG00000086117.1 ENSMUSG00000086117 ENSMUST00000149592 Gm12065 lincRNA Interval_124739 chr5 53620830 53621269 + 0 NA intron (ENSMUSG00000039191.12, intron 1 of 4) protein_coding-intron (ENSMUSG00000039191.12, intron 1 of 10) -17583 ENSMUSG00000039191.12 ENSMUSG00000039191 ENSMUST00000202092 Rbpj protein_coding Interval_18810 chr10 91060738 91061258 + 0 NA intron (ENSMUSG00000019979.12, intron 7 of 26) protein_coding-intron (ENSMUSG00000019979.12, intron 7 of 26) 21706 ENSMUSG00000019979.12 ENSMUSG00000019979 ENSMUST00000160788 Apaf1 protein_coding Interval_137398 chr6 71911972 71912343 + 0 NA promoter-TSS (ENSMUSG00000049553.11) protein_coding-promoter-TSS (ENSMUSG00000049553.11) -3407 ENSMUSG00000063884.6 ENSMUSG00000063884 ENSMUST00000205420 Ptcd3 protein_coding Interval_141436 chr6 128279108 128282734 + 0 NA intron (ENSMUSG00000030353.15, intron 1 of 1) protein_coding-intron (ENSMUSG00000030353.15, intron 1 of 11) -13181 ENSMUSG00000095262.2 ENSMUSG00000095262 ENSMUST00000179119 Gm21893 processed_pseudogene Interval_119126 chr4 135722683 135723133 + 0 NA Intergenic Intergenic -5264 ENSMUSG00000037157.8 ENSMUSG00000037157 ENSMUST00000102546 Il22ra1 protein_coding Interval_72430 chr17 29761853 29763276 + 0 NA Intergenic Intergenic 45492 ENSMUSG00000117434.1 ENSMUSG00000117434 ENSMUST00000234637 1810014P07Rik bidirectional_promoter_lncRNA Interval_112504 chr4 41664433 41665270 + 0 NA promoter-TSS (ENSMUSG00000028444.17) protein_coding-promoter-TSS (ENSMUSG00000028444.17) -817 ENSMUSG00000028444.17 ENSMUSG00000028444 ENSMUST00000145379 Cntfr protein_coding Interval_137783 chr6 82418366 82418847 + 0 NA intron (ENSMUSG00000030043.11, intron 1 of 4) protein_coding-intron (ENSMUSG00000030043.11, intron 2 of 5) 16272 ENSMUSG00000030043.11 ENSMUSG00000030043 ENSMUST00000203775 Tacr1 protein_coding Interval_55599 chr14 94796141 94797758 + 0 NA Intergenic Intergenic -61484 ENSMUSG00000115822.1 ENSMUSG00000115822 ENSMUST00000227716 Gm33450 lincRNA Interval_100963 chr2 173659064 173660585 + 0 NA promoter-TSS (ENSMUSG00000027519.10) protein_coding-promoter-TSS (ENSMUSG00000027519.10) 64 ENSMUSG00000027519.10 ENSMUSG00000027519 ENSMUST00000109110 Rab22a protein_coding Interval_118187 chr4 129426355 129426668 + 0 NA exon (ENSMUSG00000048485.12, exon 4 of 4) protein_coding-exon (ENSMUSG00000048485.12, exon 4 of 4) 6018 ENSMUSG00000048485.12 ENSMUSG00000048485 ENSMUST00000124364 Zbtb8b protein_coding Interval_156556 chr8 51272760 51273175 + 0 NA Intergenic Intergenic -2923 ENSMUSG00000109691.1 ENSMUSG00000109691 ENSMUST00000210651 Gm8679 processed_pseudogene Interval_28782 chr11 78289299 78291439 + 0 NA promoter-TSS (ENSMUSG00000037593.12) protein_coding-promoter-TSS (ENSMUSG00000037593.12) -498 ENSMUSG00000037593.12 ENSMUSG00000037593 ENSMUST00000136011 Rskr protein_coding Interval_8753 chr1 150470634 150470905 + 0 NA Intergenic Intergenic -5171 ENSMUSG00000006014.16 ENSMUSG00000006014 ENSMUST00000159035 Prg4 protein_coding Interval_138781 chr6 91814111 91814585 + 0 NA intron (ENSMUSG00000030098.15, intron 1 of 23) protein_coding-intron (ENSMUSG00000030098.15, intron 1 of 23) -18088 ENSMUSG00000030098.15 ENSMUSG00000030098 ENSMUST00000205964 Grip2 protein_coding Interval_6484 chr1 111695070 111695266 + 0 NA Intergenic Intergenic 112607 ENSMUSG00000100555.1 ENSMUSG00000100555 ENSMUST00000186797 Gm8173 processed_pseudogene Interval_15145 chr10 42880100 42880535 + 0 NA intron (ENSMUSG00000044770.14, intron 1 of 2) protein_coding-intron (ENSMUSG00000044770.14, intron 1 of 8) -6575 ENSMUSG00000111333.1 ENSMUSG00000111333 ENSMUST00000217454 Gm48670 processed_pseudogene Interval_112727 chr4 44445679 44446117 + 0 NA Intergenic Intergenic -33303 ENSMUSG00000077587.1 ENSMUSG00000077587 ENSMUST00000104399 Gm24376 snoRNA Interval_123745 chr5 35104060 35106191 + 0 NA promoter-TSS (ENSMUSG00000029103.16) protein_coding-promoter-TSS (ENSMUSG00000029103.16) -2611 ENSMUSG00000029103.16 ENSMUSG00000029103 ENSMUST00000132754 Lrpap1 protein_coding Interval_116452 chr4 112645761 112646263 + 0 NA intron (ENSMUSG00000034359.16, intron 6 of 7) protein_coding-intron (ENSMUSG00000034359.16, intron 6 of 6) 32272 ENSMUSG00000034359.16 ENSMUSG00000034359 ENSMUST00000106559 Skint2 protein_coding Interval_131537 chr5 137886027 137886296 + 0 NA Intergenic Intergenic -1910 ENSMUSG00000106435.1 ENSMUSG00000106435 ENSMUST00000198073 Gm3103 processed_pseudogene Interval_117339 chr4 123092533 123094119 + 0 NA intron (ENSMUSG00000086153.1, intron 3 of 3) antisense-intron (ENSMUSG00000086153.1, intron 3 of 3) 702 ENSMUSG00000086153.1 ENSMUSG00000086153 ENSMUST00000127060 Gm12923 antisense Interval_90163 chr2 28656119 28656772 + 0 NA intron (ENSMUSG00000026812.16, intron 2 of 10) protein_coding-intron (ENSMUSG00000026812.16, intron 2 of 22) 15217 ENSMUSG00000026812.16 ENSMUSG00000026812 ENSMUST00000139642 Tsc1 protein_coding Interval_79918 chr18 35918275 35921363 + 0 NA Intergenic Intergenic -3476 ENSMUSG00000118122.1 ENSMUSG00000118122 ENSMUST00000235914 Gm50405 lincRNA Interval_1886 chr1 34292854 34293931 + 0 NA promoter-TSS (ENSMUSG00000026131.20) protein_coding-promoter-TSS (ENSMUSG00000026131.20) -22264 ENSMUSG00000103001.1 ENSMUSG00000103001 ENSMUST00000194920 A930005N03Rik TEC Interval_138514 chr6 88841636 88843089 + 0 NA promoter-TSS (ENSMUSG00000030083.11) protein_coding-promoter-TSS (ENSMUSG00000030083.11) -492 ENSMUSG00000085828.1 ENSMUSG00000085828 ENSMUST00000147542 Gm15612 antisense Interval_111320 chr4 18660155 18660558 + 0 NA intron (ENSMUSG00000087402.1, intron 3 of 10) processed_transcript-intron (ENSMUSG00000087402.1, intron 3 of 10) -48392 ENSMUSG00000089578.1 ENSMUSG00000089578 ENSMUST00000158953 Gm25971 misc_RNA Interval_31745 chr11 102581969 102583090 + 0 NA Intergenic Intergenic -3254 ENSMUSG00000078640.9 ENSMUSG00000078640 ENSMUST00000107080 Gm11627 protein_coding Interval_67531 chr16 50380512 50381962 + 0 NA intron (ENSMUSG00000022641.15, intron 2 of 16) protein_coding-intron (ENSMUSG00000022641.15, intron 2 of 15) 51072 ENSMUSG00000022641.15 ENSMUSG00000022641 ENSMUST00000130210 Bbx protein_coding Interval_93686 chr2 75843645 75844517 + 0 NA intron (ENSMUSG00000042410.16, intron 1 of 19) protein_coding-intron (ENSMUSG00000042410.16, intron 1 of 19) -21288 ENSMUSG00000082187.1 ENSMUSG00000082187 ENSMUST00000120947 Gm13670 processed_pseudogene Interval_138511 chr6 88826309 88826989 + 0 NA TTS (ENSMUSG00000033174.17) protein_coding-TTS (ENSMUSG00000033174.17) 3519 ENSMUSG00000033174.17 ENSMUSG00000033174 ENSMUST00000205045 Mgll protein_coding Interval_171809 chr9 121385876 121386465 + 0 NA intron (ENSMUSG00000032536.12, intron 1 of 3) protein_coding-intron (ENSMUSG00000032536.12, intron 1 of 15) 39614 ENSMUSG00000110738.1 ENSMUSG00000110738 ENSMUST00000214815 Gm47092 TEC Interval_85825 chr19 32184830 32185071 + 0 NA intron (ENSMUSG00000040451.18, intron 3 of 10) protein_coding-intron (ENSMUSG00000040451.18, intron 5 of 9) 24323 ENSMUSG00000118064.1 ENSMUSG00000118064 ENSMUST00000235377 Gm50210 sense_intronic Interval_146889 chr7 55086219 55086446 + 0 NA intron (ENSMUSG00000063297.7, intron 5 of 9) protein_coding-intron (ENSMUSG00000063297.7, intron 5 of 11) -2265 ENSMUSG00000108519.1 ENSMUSG00000108519 ENSMUST00000206146 4833421K07Rik TEC Interval_49799 chr13 115638995 115639194 + 0 NA Intergenic Intergenic 80405 ENSMUSG00000114847.1 ENSMUSG00000114847 ENSMUST00000225821 Gm47892 processed_pseudogene Interval_78394 chr18 12458808 12459493 + 0 NA intron (ENSMUSG00000024421.16, intron 20 of 74) protein_coding-intron (ENSMUSG00000024421.16, intron 20 of 74) 40312 ENSMUSG00000100090.1 ENSMUSG00000100090 ENSMUST00000187766 Gm29199 processed_pseudogene Interval_109656 chr3 145771996 145774059 + 0 NA intron (ENSMUSG00000028194.15, intron 1 of 5) protein_coding-intron (ENSMUSG00000028194.15, intron 1 of 5) -33861 ENSMUSG00000105608.1 ENSMUSG00000105608 ENSMUST00000198263 Gm43408 processed_pseudogene Interval_107009 chr3 102886797 102887377 + 0 NA intron (ENSMUSG00000027855.13, intron 20 of 32) protein_coding-intron (ENSMUSG00000027855.13, intron 20 of 32) 6307 ENSMUSG00000105938.1 ENSMUSG00000105938 ENSMUST00000196911 Gm33866 processed_pseudogene Interval_105985 chr3 90454845 90456178 + 0 NA intron (ENSMUSG00000027931.12, intron 5 of 5) protein_coding-intron (ENSMUSG00000027931.12, intron 18 of 21) -3730 ENSMUSG00000027931.12 ENSMUSG00000027931 ENSMUST00000124760 Npr1 protein_coding Interval_62357 chr15 91007149 91007806 + 0 NA intron (ENSMUSG00000022629.17, intron 1 of 32) protein_coding-intron (ENSMUSG00000022629.17, intron 1 of 35) 49481 ENSMUSG00000116113.1 ENSMUSG00000116113 ENSMUST00000229864 Gm49545 processed_pseudogene Interval_32815 chr11 111030260 111030632 + 0 NA Intergenic Intergenic -35718 ENSMUSG00000041695.2 ENSMUSG00000041695 ENSMUST00000042970 Kcnj2 protein_coding Interval_68428 chr16 76358232 76358659 + 0 NA intron (ENSMUSG00000048490.14, intron 1 of 3) protein_coding-intron (ENSMUSG00000048490.14, intron 1 of 3) 15381 ENSMUSG00000048490.14 ENSMUSG00000048490 ENSMUST00000145649 Nrip1 protein_coding Interval_101169 chr2 178750671 178751448 + 0 NA Intergenic Intergenic 270074 ENSMUSG00000082215.3 ENSMUSG00000082215 ENSMUST00000118225 Gm14314 processed_pseudogene Interval_130545 chr5 128706650 128707654 + 0 NA intron (ENSMUSG00000029423.10, intron 1 of 13) protein_coding-intron (ENSMUSG00000029423.10, intron 1 of 13) 4628 ENSMUSG00000029423.10 ENSMUSG00000029423 ENSMUST00000195959 Piwil1 protein_coding Interval_161746 chr8 122510862 122511734 + 0 NA intron (ENSMUSG00000014444.17, intron 2 of 50) protein_coding-intron (ENSMUSG00000014444.17, intron 2 of 50) 9376 ENSMUSG00000065080.1 ENSMUSG00000065080 ENSMUST00000083146 Gm26497 snRNA Interval_62701 chr15 96352546 96352855 + 0 NA TTS (ENSMUSG00000033237.19) protein_coding-TTS (ENSMUSG00000033237.19) -26114 ENSMUSG00000033237.19 ENSMUSG00000033237 ENSMUST00000176739 Arid2 protein_coding Interval_169069 chr9 91413896 91414882 + 0 NA intron (ENSMUSG00000100341.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000100341.1, intron 1 of 2) 9915 ENSMUSG00000100341.1 ENSMUSG00000100341 ENSMUST00000191272 Gm29478 lincRNA Interval_46342 chr13 64080152 64082612 + 0 NA intron (ENSMUSG00000033122.14, intron 2 of 7) protein_coding-intron (ENSMUSG00000033122.14, intron 2 of 11) 7819 ENSMUSG00000033122.14 ENSMUSG00000033122 ENSMUST00000222810 Hsd17b3 protein_coding Interval_25537 chr11 49650343 49653316 + 0 NA exon (ENSMUSG00000020357.3, exon 30 of 30) protein_coding-exon (ENSMUSG00000020357.3, exon 30 of 30) -11781 ENSMUSG00000064057.12 ENSMUSG00000064057 ENSMUST00000076006 Scgb3a1 protein_coding Interval_74941 chr17 57639742 57641173 + 0 NA Intergenic Intergenic -82492 ENSMUSG00000117223.1 ENSMUSG00000117223 ENSMUST00000233817 Gm49842 unprocessed_pseudogene Interval_164273 chr9 34861107 34862020 + 0 NA intron (ENSMUSG00000032036.15, intron 1 of 15) protein_coding-intron (ENSMUSG00000032036.15, intron 1 of 16) 67946 ENSMUSG00000053889.5 ENSMUSG00000053889 ENSMUST00000066604 Kirrel3os antisense Interval_86724 chr19 43285999 43286213 + 0 NA intron (ENSMUSG00000074852.4, intron 3 of 11) protein_coding-intron (ENSMUSG00000074852.4, intron 3 of 11) 5308 ENSMUSG00000047509.1 ENSMUSG00000047509 ENSMUST00000057752 Gm6776 processed_pseudogene Interval_52824 chr14 50892901 50893188 + 0 NA exon (ENSMUSG00000090799.2, exon 1 of 3) protein_coding-exon (ENSMUSG00000090799.2, exon 1 of 3) 4463 ENSMUSG00000090799.2 ENSMUSG00000090799 ENSMUST00000170855 Klhl33 protein_coding Interval_163814 chr9 26775873 26777357 + 0 NA intron (ENSMUSG00000036395.15, intron 4 of 15) protein_coding-intron (ENSMUSG00000036395.15, intron 8 of 19) 27083 ENSMUSG00000036395.15 ENSMUSG00000036395 ENSMUST00000216272 Glb1l2 protein_coding Interval_155128 chr8 26844209 26846277 + 0 NA intron (ENSMUSG00000100335.2, intron 2 of 2) lincRNA-intron (ENSMUSG00000100335.2, intron 1 of 2) 37452 ENSMUSG00000100335.2 ENSMUSG00000100335 ENSMUST00000210263 2310008N11Rik lincRNA Interval_79105 chr18 24575796 24577502 + 0 NA Intergenic Intergenic 18047 ENSMUSG00000095437.1 ENSMUSG00000095437 ENSMUST00000116938 Gm23606 miRNA Interval_84599 chr19 14228775 14229003 + 0 NA Intergenic Intergenic -210518 ENSMUSG00000098074.1 ENSMUSG00000098074 ENSMUST00000182766 Gm26993 processed_pseudogene Interval_138519 chr6 88879649 88880044 + 0 NA Intergenic Intergenic -2809 ENSMUSG00000107432.1 ENSMUSG00000107432 ENSMUST00000204113 Gm36189 processed_pseudogene Interval_77985 chr18 6450183 6450436 + 0 NA exon (ENSMUSG00000024240.13, exon 8 of 14) protein_coding-exon (ENSMUSG00000024240.13, exon 8 of 14) -8415 ENSMUSG00000024240.13 ENSMUSG00000024240 ENSMUST00000050542 Epc1 protein_coding Interval_145506 chr7 35269454 35270287 + 0 NA intron (ENSMUSG00000118454.1, intron 1 of 9) protein_coding-intron (ENSMUSG00000118454.1, intron 1 of 9) 5663 ENSMUSG00000118454.1 ENSMUSG00000118454 ENSMUST00000238407 Wdr88 protein_coding Interval_151613 chr7 125283302 125283592 + 0 NA TTS (ENSMUSG00000045928.2) lincRNA-TTS (ENSMUSG00000045928.2) -34912 ENSMUSG00000104236.1 ENSMUSG00000104236 ENSMUST00000194425 4930533L02Rik TEC Interval_45695 chr13 57019198 57019675 + 0 NA Intergenic Intergenic -88488 ENSMUSG00000077279.1 ENSMUSG00000077279 ENSMUST00000104091 Gm22777 snoRNA Interval_158542 chr8 84350955 84351496 + 0 NA intron (ENSMUSG00000034656.18, intron 1 of 48) protein_coding-intron (ENSMUSG00000034656.18, intron 1 of 48) 12586 ENSMUSG00000034656.18 ENSMUSG00000034656 ENSMUST00000130507 Cacna1a protein_coding Interval_134998 chr6 34431555 34432622 + 0 NA intron (ENSMUSG00000084965.1, intron 1 of 2) transcribed_processed_pseudogene-intron (ENSMUSG00000084965.1, intron 3 of 3) 11026 ENSMUSG00000084965.1 ENSMUSG00000084965 ENSMUST00000141091 Gm13857 transcribed_processed_pseudogene Interval_147218 chr7 64729644 64730452 + 0 NA intron (ENSMUSG00000030519.14, intron 1 of 5) protein_coding-intron (ENSMUSG00000030519.14, intron 6 of 14) -14535 ENSMUSG00000030519.14 ENSMUSG00000030519 ENSMUST00000206630 Apba2 protein_coding Interval_36072 chr12 35046584 35048145 + 0 NA exon (ENSMUSG00000020590.16, exon 1 of 26) protein_coding-exon (ENSMUSG00000020590.16, exon 1 of 26) 147 ENSMUSG00000020590.16 ENSMUSG00000020590 ENSMUST00000221870 Snx13 protein_coding Interval_123143 chr5 30080175 30080486 + 0 NA Intergenic Intergenic -6754 ENSMUSG00000025747.12 ENSMUSG00000025747 ENSMUST00000138520 Tyms protein_coding Interval_92826 chr2 66019210 66019416 + 0 NA intron (ENSMUSG00000044647.16, intron 3 of 4) protein_coding-intron (ENSMUSG00000044647.16, intron 4 of 5) -65243 ENSMUSG00000085160.1 ENSMUSG00000085160 ENSMUST00000155350 Gm13617 antisense Interval_141625 chr6 131421493 131422112 + 0 NA Intergenic Intergenic 12109 ENSMUSG00000107832.1 ENSMUSG00000107832 ENSMUST00000204695 Gm18688 processed_pseudogene Interval_118420 chr4 131355451 131356674 + 0 NA Intergenic Intergenic 116785 ENSMUSG00000088041.1 ENSMUSG00000088041 ENSMUST00000157416 Gm25261 snoRNA Interval_131443 chr5 137264814 137265023 + 0 NA Intergenic Intergenic -23365 ENSMUSG00000023328.14 ENSMUSG00000023328 ENSMUST00000137126 Ache protein_coding Interval_139257 chr6 97600055 97600520 + 0 NA intron (ENSMUSG00000030064.16, intron 1 of 7) protein_coding-intron (ENSMUSG00000030064.16, intron 1 of 23) -19195 ENSMUSG00000108093.1 ENSMUSG00000108093 ENSMUST00000204031 Gm44102 TEC Interval_43309 chr13 28946508 28947005 + 0 NA Intergenic Intergenic 6957 ENSMUSG00000076431.4 ENSMUSG00000076431 ENSMUST00000067230 Sox4 protein_coding Interval_61077 chr15 79092920 79093656 + 0 NA intron (ENSMUSG00000033047.5, intron 4 of 5) protein_coding-intron (ENSMUSG00000033047.5, intron 11 of 12) 1769 ENSMUSG00000092974.2 ENSMUSG00000092974 ENSMUST00000175233 Gm25072 misc_RNA Interval_117955 chr4 127317145 127317368 + 0 NA Intergenic Intergenic -3217 ENSMUSG00000050234.7 ENSMUSG00000050234 ENSMUST00000053753 Gja4 protein_coding Interval_112073 chr4 34336618 34337683 + 0 NA Intergenic Intergenic -16893 ENSMUSG00000062554.7 ENSMUSG00000062554 ENSMUST00000122336 Gm12751 processed_pseudogene Interval_151060 chr7 118243114 118244452 + 0 NA promoter-TSS (ENSMUSG00000030655.15) protein_coding-promoter-TSS (ENSMUSG00000030655.15) -82 ENSMUSG00000055159.7 ENSMUSG00000055159 ENSMUST00000138180 4930583K01Rik bidirectional_promoter_lncRNA Interval_98715 chr2 154474347 154474620 + 0 NA intron (ENSMUSG00000038533.15, intron 1 of 2) protein_coding-intron (ENSMUSG00000038533.15, intron 1 of 10) 37641 ENSMUSG00000038533.15 ENSMUSG00000038533 ENSMUST00000139506 Cbfa2t2 protein_coding Interval_110929 chr4 10433026 10434102 + 0 NA Intergenic Intergenic 6179 ENSMUSG00000084215.3 ENSMUSG00000084215 ENSMUST00000119515 Gm11814 processed_pseudogene Interval_105885 chr3 89920579 89921276 + 0 NA Intergenic Intergenic -7731 ENSMUSG00000027947.11 ENSMUSG00000027947 ENSMUST00000029559 Il6ra protein_coding Interval_102598 chr3 28170202 28171620 + 0 NA Intergenic Intergenic -5642 ENSMUSG00000109716.1 ENSMUSG00000109716 ENSMUST00000209618 Gm42196 lincRNA Interval_41009 chr12 110564444 110564695 + 0 NA intron (ENSMUSG00000017843.14, intron 11 of 12) protein_coding-intron (ENSMUSG00000017843.14, intron 9 of 13) -25943 ENSMUSG00000113361.1 ENSMUSG00000113361 ENSMUST00000221143 B930059L03Rik lincRNA Interval_55301 chr14 81560455 81561130 + 0 NA Intergenic Intergenic -125018 ENSMUSG00000115455.1 ENSMUSG00000115455 ENSMUST00000227374 Gm41219 lincRNA Interval_22262 chr11 8423731 8425058 + 0 NA Intergenic Intergenic -40541 ENSMUSG00000083553.1 ENSMUSG00000083553 ENSMUST00000117240 Gm11989 processed_pseudogene Interval_73947 chr17 45618821 45620013 + 0 NA Intergenic Intergenic -1262 ENSMUSG00000065743.1 ENSMUSG00000065743 ENSMUST00000083809 Gm25008 snRNA Interval_172325 chrX 13025504 13026121 + 0 NA Intergenic Intergenic -16239 ENSMUSG00000087424.1 ENSMUSG00000087424 ENSMUST00000130099 5730405O15Rik processed_transcript Interval_63906 chr16 4511684 4511889 + 0 NA intron (ENSMUSG00000022519.14, intron 1 of 1) protein_coding-intron (ENSMUSG00000022519.14, intron 1 of 1) -27522 ENSMUSG00000083585.1 ENSMUSG00000083585 ENSMUST00000122114 Gm15885 processed_pseudogene Interval_47348 chr13 81737532 81737802 + 0 NA intron (ENSMUSG00000051098.6, intron 1 of 1) protein_coding-intron (ENSMUSG00000051098.6, intron 1 of 1) -12639 ENSMUSG00000114905.1 ENSMUSG00000114905 ENSMUST00000224298 Gm48113 processed_pseudogene Interval_162312 chr8 126986309 126986779 + 0 NA Intergenic Intergenic -4312 ENSMUSG00000110648.1 ENSMUSG00000110648 ENSMUST00000211855 Gm38574 processed_pseudogene Interval_108525 chr3 127948855 127949720 + 0 NA intron (ENSMUSG00000104763.1, intron 4 of 4) lincRNA-intron (ENSMUSG00000104763.1, intron 4 of 4) -21422 ENSMUSG00000106437.1 ENSMUSG00000106437 ENSMUST00000199122 Gm35667 lincRNA Interval_83854 chr19 5106428 5108968 + 0 NA promoter-TSS (ENSMUSG00000024870.6) protein_coding-promoter-TSS (ENSMUSG00000024870.6) -722 ENSMUSG00000024870.6 ENSMUSG00000024870 ENSMUST00000237201 Rab1b protein_coding Interval_56499 chr14 119236266 119236494 + 0 NA intron (ENSMUSG00000053465.6, intron 1 of 1) protein_coding-intron (ENSMUSG00000053465.6, intron 1 of 1) -42044 ENSMUSG00000115684.1 ENSMUSG00000115684 ENSMUST00000227446 Gm6087 processed_pseudogene Interval_33577 chr11 117319720 117320829 + 0 NA intron (ENSMUSG00000059248.13, intron 1 of 2) protein_coding-intron (ENSMUSG00000059248.13, intron 2 of 10) -12154 ENSMUSG00000059248.13 ENSMUSG00000059248 ENSMUST00000129387 Septin9 protein_coding Interval_47388 chr13 82997100 82998093 + 0 NA Intergenic Intergenic -67861 ENSMUSG00000114372.1 ENSMUSG00000114372 ENSMUST00000225970 2310067P03Rik lincRNA Interval_166838 chr9 63132093 63133522 + 0 NA promoter-TSS (ENSMUSG00000094201.1) snRNA-promoter-TSS (ENSMUSG00000094201.1) -476 ENSMUSG00000094201.1 ENSMUSG00000094201 ENSMUST00000179535 Gm25064 snRNA Interval_21484 chr10 128855953 128856174 + 0 NA intron (ENSMUSG00000078427.3, intron 10 of 11) protein_coding-intron (ENSMUSG00000078427.3, intron 9 of 10) 34131 ENSMUSG00000078427.3 ENSMUSG00000078427 ENSMUST00000220381 Sarnp protein_coding Interval_6691 chr1 118776556 118777282 + 0 NA Intergenic Intergenic -33217 ENSMUSG00000100040.1 ENSMUSG00000100040 ENSMUST00000190981 Gm28467 processed_pseudogene Interval_27661 chr11 69357745 69358067 + 0 NA intron (ENSMUSG00000018474.18, intron 12 of 36) protein_coding-intron (ENSMUSG00000018474.18, intron 13 of 38) -7245 ENSMUSG00000087881.1 ENSMUSG00000087881 ENSMUST00000157256 Gm22442 scaRNA Interval_143196 chr7 4420451 4421547 + 0 NA Intergenic Intergenic 8561 ENSMUSG00000108761.1 ENSMUSG00000108761 ENSMUST00000206596 Atp6v0c-ps1 processed_pseudogene Interval_61689 chr15 83420424 83420870 + 0 NA intron (ENSMUSG00000016664.16, intron 1 of 11) protein_coding-intron (ENSMUSG00000016664.16, intron 1 of 11) -14584 ENSMUSG00000049414.7 ENSMUSG00000049414 ENSMUST00000079706 Gm5417 processed_pseudogene Interval_6049 chr1 95030465 95030911 + 0 NA Intergenic Intergenic 9355 ENSMUSG00000089310.1 ENSMUSG00000089310 ENSMUST00000158685 Gm23181 snoRNA Interval_111826 chr4 31565600 31565829 + 0 NA Intergenic Intergenic 185242 ENSMUSG00000082254.1 ENSMUSG00000082254 ENSMUST00000118967 Gm11922 processed_pseudogene Interval_85188 chr19 23523668 23524158 + 0 NA Intergenic Intergenic -75471 ENSMUSG00000033207.7 ENSMUSG00000033207 ENSMUST00000236349 Mamdc2 protein_coding Interval_879 chr1 12930324 12930750 + 0 NA intron (ENSMUSG00000025938.16, intron 4 of 9) protein_coding-intron (ENSMUSG00000025938.16, intron 3 of 7) 60640 ENSMUSG00000025938.16 ENSMUSG00000025938 ENSMUST00000191566 Slco5a1 protein_coding Interval_159258 chr8 92401898 92402116 + 0 NA Intergenic Intergenic 44382 ENSMUSG00000031737.11 ENSMUSG00000031737 ENSMUST00000034184 Irx5 protein_coding Interval_31819 chr11 103132011 103133470 + 0 NA promoter-TSS (ENSMUSG00000043372.12) protein_coding-promoter-TSS (ENSMUSG00000043372.12) 311 ENSMUSG00000043372.12 ENSMUSG00000043372 ENSMUST00000130341 Hexim2 protein_coding Interval_21051 chr10 125429483 125429654 + 0 NA Intergenic Intergenic 41029 ENSMUSG00000111943.1 ENSMUSG00000111943 ENSMUST00000220021 Gm47862 TEC Interval_148556 chr7 82609806 82610340 + 0 NA intron (ENSMUSG00000070469.12, intron 9 of 10) protein_coding-intron (ENSMUSG00000070469.12, intron 28 of 29) 38423 ENSMUSG00000038570.15 ENSMUSG00000038570 ENSMUST00000126478 Saxo2 protein_coding Interval_106022 chr3 90730537 90730923 + 0 NA intron (ENSMUSG00000042250.13, intron 3 of 7) protein_coding-intron (ENSMUSG00000042250.13, intron 3 of 7) 3824 ENSMUSG00000042250.13 ENSMUSG00000042250 ENSMUST00000156268 Pglyrp4 protein_coding Interval_147673 chr7 71581835 71582036 + 0 NA Intergenic Intergenic 106512 ENSMUSG00000108978.1 ENSMUSG00000108978 ENSMUST00000208786 Gm44689 lincRNA Interval_134564 chr6 29609090 29610381 + 0 NA promoter-TSS (ENSMUSG00000012535.14) protein_coding-promoter-TSS (ENSMUSG00000012535.14) -38216 ENSMUSG00000012535.14 ENSMUSG00000012535 ENSMUST00000166844 Tnpo3 protein_coding Interval_112307 chr4 40240488 40240758 + 0 NA promoter-TSS (ENSMUSG00000040296.15) protein_coding-promoter-TSS (ENSMUSG00000040296.15) -798 ENSMUSG00000040296.15 ENSMUSG00000040296 ENSMUST00000149539 Ddx58 protein_coding Interval_32028 chr11 104549720 104551004 + 0 NA promoter-TSS (ENSMUSG00000061086.12) protein_coding-promoter-TSS (ENSMUSG00000061086.12) 258 ENSMUSG00000020687.13 ENSMUSG00000020687 ENSMUST00000135303 Cdc27 protein_coding Interval_128918 chr5 116084951 116085180 + 0 NA Intergenic Intergenic -1819 ENSMUSG00000079278.2 ENSMUSG00000079278 ENSMUST00000239438 Tmem233 protein_coding Interval_148381 chr7 80900702 80901721 + 0 NA promoter-TSS (ENSMUSG00000025722.16) protein_coding-promoter-TSS (ENSMUSG00000025722.16) 21 ENSMUSG00000025722.16 ENSMUSG00000025722 ENSMUST00000145923 Wdr73 protein_coding Interval_76872 chr17 84644948 84645883 + 0 NA intron (ENSMUSG00000024253.9, intron 8 of 12) protein_coding-intron (ENSMUSG00000024253.9, intron 8 of 12) -3860 ENSMUSG00000024253.9 ENSMUSG00000024253 ENSMUST00000234861 Dync2li1 protein_coding Interval_22687 chr11 12997475 12998432 + 0 NA exon (ENSMUSG00000084055.1, exon 1 of 1) processed_pseudogene-exon (ENSMUSG00000084055.1, exon 1 of 1) 287 ENSMUSG00000084055.1 ENSMUSG00000084055 ENSMUST00000117869 Gm12004 processed_pseudogene Interval_77546 chr17 91363049 91363409 + 0 NA Intergenic Intergenic -15657 ENSMUSG00000117471.1 ENSMUSG00000117471 ENSMUST00000233999 Gm49988 processed_pseudogene Interval_167801 chr9 72787529 72788299 + 0 NA Intergenic Intergenic -11689 ENSMUSG00000098294.1 ENSMUSG00000098294 ENSMUST00000184673 Gm27204 lincRNA Interval_118541 chr4 132377449 132377828 + 0 NA intron (ENSMUSG00000066043.13, intron 4 of 5) protein_coding-intron (ENSMUSG00000066043.13, intron 4 of 12) -23975 ENSMUSG00000085241.7 ENSMUSG00000085241 ENSMUST00000136127 Snhg3 processed_transcript Interval_154556 chr8 19434542 19434998 + 0 NA Intergenic Intergenic 12264 ENSMUSG00000082710.1 ENSMUSG00000082710 ENSMUST00000121373 Defa-ps14 unprocessed_pseudogene Interval_35738 chr12 28769860 28770666 + 0 NA intron (ENSMUSG00000036613.8, intron 3 of 4) protein_coding-intron (ENSMUSG00000036613.8, intron 3 of 9) 18424 ENSMUSG00000036613.8 ENSMUSG00000036613 ENSMUST00000220933 Eipr1 protein_coding Interval_154731 chr8 22900776 22901975 + 0 NA intron (ENSMUSG00000031540.14, intron 2 of 17) protein_coding-intron (ENSMUSG00000031540.14, intron 3 of 17) 27786 ENSMUSG00000109652.1 ENSMUSG00000109652 ENSMUST00000210028 Gm45555 TEC Interval_630 chr1 9251891 9252107 + 0 NA intron (ENSMUSG00000025909.16, intron 1 of 4) protein_coding-intron (ENSMUSG00000025909.16, intron 1 of 4) 7135 ENSMUSG00000103819.1 ENSMUSG00000103819 ENSMUST00000195333 Gm38008 processed_pseudogene Interval_20757 chr10 120777642 120777880 + 0 NA exon (ENSMUSG00000044544.4, exon 3 of 3) lincRNA-exon (ENSMUSG00000044544.4, exon 3 of 3) -11733 ENSMUSG00000111907.1 ENSMUSG00000111907 ENSMUST00000219156 Gm48202 lincRNA Interval_53009 chr14 53427010 53428605 + 0 NA promoter-TSS (ENSMUSG00000094220.5) TR_V_gene-promoter-TSS (ENSMUSG00000094220.5) -2266 ENSMUSG00000094220.5 ENSMUSG00000094220 ENSMUST00000183604 Trav6-3 TR_V_gene Interval_65746 chr16 26961757 26962998 + 0 NA intron (ENSMUSG00000068428.7, intron 4 of 4) protein_coding-intron (ENSMUSG00000068428.7, intron 4 of 4) 5868 ENSMUSG00000068428.7 ENSMUSG00000068428 ENSMUST00000231299 Gmnc protein_coding Interval_18835 chr10 91177322 91178141 + 0 NA intron (ENSMUSG00000019961.17, intron 1 of 2) protein_coding-intron (ENSMUSG00000019961.17, intron 1 of 2) -7269 ENSMUSG00000019961.17 ENSMUSG00000019961 ENSMUST00000213270 Tmpo protein_coding Interval_169729 chr9 100740791 100741164 + 0 NA intron (ENSMUSG00000037286.15, intron 4 of 5) protein_coding-intron (ENSMUSG00000037286.15, intron 4 of 32) 37764 ENSMUSG00000104272.1 ENSMUSG00000104272 ENSMUST00000195122 Gm38297 TEC Interval_110732 chr4 7537525 7537968 + 0 NA Intergenic Intergenic -22942 ENSMUSG00000086070.1 ENSMUSG00000086070 ENSMUST00000129988 8430436N08Rik lincRNA Interval_119426 chr4 137581728 137582380 + 0 NA promoter-TSS (ENSMUSG00000094035.3) protein_coding-promoter-TSS (ENSMUSG00000094035.3) 50 ENSMUSG00000094035.3 ENSMUSG00000094035 ENSMUST00000238941 Ldlrad2 protein_coding Interval_151510 chr7 123172009 123172243 + 0 NA promoter-TSS (ENSMUSG00000052707.8) protein_coding-promoter-TSS (ENSMUSG00000052707.8) 480 ENSMUSG00000052707.8 ENSMUSG00000052707 ENSMUST00000206126 Tnrc6a protein_coding Interval_106504 chr3 96733968 96734593 + 0 NA intron (ENSMUSG00000028098.13, intron 1 of 5) protein_coding-intron (ENSMUSG00000028098.13, intron 1 of 8) 6441 ENSMUSG00000028098.13 ENSMUSG00000028098 ENSMUST00000199974 Rnf115 protein_coding Interval_10582 chr1 172012150 172013178 + 0 NA intron (ENSMUSG00000026556.15, intron 3 of 3) protein_coding-intron (ENSMUSG00000026556.15, intron 3 of 7) 14047 ENSMUSG00000026556.15 ENSMUSG00000026556 ENSMUST00000138714 Vangl2 protein_coding Interval_72128 chr17 28197602 28197886 + 0 NA promoter-TSS (ENSMUSG00000024220.14) protein_coding-promoter-TSS (ENSMUSG00000024220.14) -10082 ENSMUSG00000002257.8 ENSMUSG00000002257 ENSMUST00000233534 Def6 protein_coding Interval_51622 chr14 30858086 30858667 + 0 NA intron (ENSMUSG00000006526.13, intron 1 of 2) protein_coding-intron (ENSMUSG00000006526.13, intron 1 of 7) -20824 ENSMUSG00000042485.7 ENSMUSG00000042485 ENSMUST00000040715 Mustn1 protein_coding Interval_166794 chr9 62759604 62759865 + 0 NA intron (ENSMUSG00000032243.8, intron 15 of 27) protein_coding-intron (ENSMUSG00000032243.8, intron 15 of 29) -30170 ENSMUSG00000111537.1 ENSMUSG00000111537 ENSMUST00000214567 Gm7653 processed_pseudogene Interval_8316 chr1 137226623 137227140 + 0 NA Intergenic Intergenic -11234 ENSMUSG00000077207.1 ENSMUSG00000077207 ENSMUST00000104019 Gm25609 snRNA Interval_21987 chr11 5578392 5579208 + 0 NA intron (ENSMUSG00000020481.15, intron 3 of 3) protein_coding-intron (ENSMUSG00000020481.15, intron 6 of 6) 4717 ENSMUSG00000020481.15 ENSMUSG00000020481 ENSMUST00000137933 Ankrd36 protein_coding Interval_169339 chr9 96507709 96508017 + 0 NA intron (ENSMUSG00000099564.2, intron 6 of 10) protein_coding-intron (ENSMUSG00000099564.2, intron 6 of 10) -12650 ENSMUSG00000099049.1 ENSMUSG00000099049 ENSMUST00000183341 Gm27289 rRNA Interval_9091 chr1 153531397 153533537 + 0 NA intron (ENSMUSG00000042684.8, intron 4 of 11) protein_coding-intron (ENSMUSG00000042684.8, intron 4 of 11) 17244 ENSMUSG00000042684.8 ENSMUSG00000042684 ENSMUST00000187747 Npl protein_coding Interval_127973 chr5 109990851 109991085 + 0 NA Intergenic Intergenic 5430 ENSMUSG00000097863.1 ENSMUSG00000097863 ENSMUST00000181488 1010001B22Rik lincRNA Interval_139362 chr6 99452848 99453049 + 0 NA intron (ENSMUSG00000030068.4, intron 1 of 1) protein_coding-intron (ENSMUSG00000030068.4, intron 3 of 5) 31754 ENSMUSG00000088699.1 ENSMUSG00000088699 ENSMUST00000158074 Gm22328 miRNA Interval_15352 chr10 45009501 45010657 + 0 NA Intergenic Intergenic 3969 ENSMUSG00000095168.1 ENSMUSG00000095168 ENSMUST00000095717 Gm4795 processed_pseudogene Interval_142283 chr6 140444695 140445539 + 0 NA intron (ENSMUSG00000030231.11, intron 1 of 9) protein_coding-intron (ENSMUSG00000030231.11, intron 3 of 30) 24946 ENSMUSG00000107891.1 ENSMUSG00000107891 ENSMUST00000204085 Gm5051 processed_pseudogene Interval_90713 chr2 32068725 32069548 + 0 NA TTS (ENSMUSG00000050592.8) protein_coding-TTS (ENSMUSG00000050592.8) -4225 ENSMUSG00000090157.7 ENSMUSG00000090157 ENSMUST00000156387 Gm16534 processed_transcript Interval_113375 chr4 53905461 53906401 + 0 NA TTS (ENSMUSG00000077418.1) snoRNA-TTS (ENSMUSG00000077418.1) 235 ENSMUSG00000077418.1 ENSMUSG00000077418 ENSMUST00000104230 Gm23745 snoRNA Interval_30751 chr11 96277508 96277720 + 0 NA Intergenic Intergenic -5111 ENSMUSG00000056648.5 ENSMUSG00000056648 ENSMUST00000168043 Hoxb8 protein_coding Interval_121951 chr5 12295602 12296090 + 0 NA Intergenic Intergenic 59941 ENSMUSG00000104941.1 ENSMUSG00000104941 ENSMUST00000198497 Gm8953 lincRNA Interval_96006 chr2 119123596 119123883 + 0 NA promoter-TSS (ENSMUSG00000027323.10) protein_coding-promoter-TSS (ENSMUSG00000027323.10) -7779 ENSMUSG00000027323.10 ENSMUSG00000027323 ENSMUST00000143934 Rad51 protein_coding Interval_27251 chr11 64954737 64955815 + 0 NA Intergenic Intergenic -23796 ENSMUSG00000020549.14 ENSMUSG00000020549 ENSMUST00000128693 Elac2 protein_coding Interval_46242 chr13 62901842 62902530 + 0 NA Intergenic Intergenic -29428 ENSMUSG00000069805.10 ENSMUSG00000069805 ENSMUST00000134814 Fbp1 protein_coding Interval_70224 chr17 6812333 6813229 + 0 NA intron (ENSMUSG00000116644.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000116644.1, intron 1 of 1) 4272 ENSMUSG00000116644.1 ENSMUSG00000116644 ENSMUST00000231816 4933426B08Rik lincRNA Interval_102684 chr3 29993474 29994253 + 0 NA intron (ENSMUSG00000027684.16, intron 3 of 5) protein_coding-intron (ENSMUSG00000027684.16, intron 3 of 14) -23665 ENSMUSG00000085702.8 ENSMUSG00000085702 ENSMUST00000173827 Mecomos antisense Interval_87505 chr19 53092176 53092661 + 0 NA Intergenic Intergenic 16175 ENSMUSG00000099988.7 ENSMUSG00000099988 ENSMUST00000236249 1700054A03Rik processed_transcript Interval_36618 chr12 51534725 51535690 + 0 NA Intergenic Intergenic 17881 ENSMUSG00000111959.1 ENSMUSG00000111959 ENSMUST00000220340 Gm18503 processed_pseudogene Interval_166000 chr9 55311365 55312288 + 0 NA intron (ENSMUSG00000032311.17, intron 4 of 4) protein_coding-intron (ENSMUSG00000032311.17, intron 2 of 8) 6538 ENSMUSG00000082744.1 ENSMUSG00000082744 ENSMUST00000117617 Gm15625 processed_pseudogene Interval_161793 chr8 122834288 122835270 + 0 NA intron (ENSMUSG00000092329.1, intron 1 of 15) protein_coding-intron (ENSMUSG00000092329.1, intron 1 of 15) -1772 ENSMUSG00000110525.1 ENSMUSG00000110525 ENSMUST00000211899 Gm45893 processed_pseudogene Interval_73038 chr17 34299117 34299804 + 0 NA intron (ENSMUSG00000092415.2, intron 2 of 2) antisense-intron (ENSMUSG00000092415.2, intron 2 of 2) -6466 ENSMUSG00000060586.11 ENSMUSG00000060586 ENSMUST00000235501 H2-Eb1 protein_coding Interval_66597 chr16 35509666 35510049 + 0 NA promoter-TSS (ENSMUSG00000099429.1) lincRNA-promoter-TSS (ENSMUSG00000099429.1) -438 ENSMUSG00000099429.1 ENSMUSG00000099429 ENSMUST00000187829 1600019K03Rik lincRNA Interval_103757 chr3 52385884 52386699 + 0 NA Intergenic Intergenic -39117 ENSMUSG00000103454.1 ENSMUSG00000103454 ENSMUST00000194115 Gm38098 processed_pseudogene Interval_9400 chr1 156829757 156830241 + 0 NA exon (ENSMUSG00000026594.14, exon 1 of 1) protein_coding-exon (ENSMUSG00000026594.14, exon 1 of 1) 5940 ENSMUSG00000101964.1 ENSMUSG00000101964 ENSMUST00000190758 Gm28693 transcribed_processed_pseudogene Interval_120319 chr4 147855439 147855883 + 0 NA Intergenic Intergenic -7295 ENSMUSG00000059423.13 ENSMUSG00000059423 ENSMUST00000135798 Zfp933 protein_coding Interval_137468 chr6 72641612 72642149 + 0 NA TTS (ENSMUSG00000102931.1) TEC-TTS (ENSMUSG00000102931.1) 2205 ENSMUSG00000102931.1 ENSMUSG00000102931 ENSMUST00000191877 Gm38114 TEC Interval_63459 chr15 101209974 101211002 + 0 NA intron (ENSMUSG00000000532.11, intron 8 of 8) protein_coding-intron (ENSMUSG00000000532.11, intron 8 of 8) -10759 ENSMUSG00000115944.1 ENSMUSG00000115944 ENSMUST00000229162 AU021063 lincRNA Interval_64071 chr16 7150470 7150756 + 0 NA intron (ENSMUSG00000008658.16, intron 1 of 12) protein_coding-intron (ENSMUSG00000008658.16, intron 3 of 14) -43134 ENSMUSG00000008658.16 ENSMUSG00000008658 ENSMUST00000231031 Rbfox1 protein_coding Interval_169134 chr9 93688905 93689168 + 0 NA Intergenic Intergenic 119462 ENSMUSG00000111630.1 ENSMUSG00000111630 ENSMUST00000216733 Gm47165 processed_pseudogene Interval_112607 chr4 43530312 43531139 + 0 NA TTS (ENSMUSG00000028465.16) protein_coding-TTS (ENSMUSG00000028465.16) -6960 ENSMUSG00000028464.16 ENSMUSG00000028464 ENSMUST00000150592 Tpm2 protein_coding Interval_152537 chr7 133994230 133994704 + 0 NA intron (ENSMUSG00000054555.11, intron 5 of 6) protein_coding-intron (ENSMUSG00000054555.11, intron 5 of 22) -54726 ENSMUSG00000093032.1 ENSMUSG00000093032 ENSMUST00000175291 Gm23631 miRNA Interval_45867 chr13 58630915 58631131 + 0 NA Intergenic Intergenic -20146 ENSMUSG00000021553.14 ENSMUSG00000021553 ENSMUST00000151675 Slc28a3 protein_coding Interval_111322 chr4 18747217 18747418 + 0 NA intron (ENSMUSG00000087402.1, intron 3 of 10) processed_transcript-intron (ENSMUSG00000087402.1, intron 3 of 10) -16769 ENSMUSG00000088500.1 ENSMUSG00000088500 ENSMUST00000157875 Gm24419 misc_RNA Interval_114539 chr4 82383253 82384916 + 0 NA intron (ENSMUSG00000008575.17, intron 2 of 4) protein_coding-intron (ENSMUSG00000008575.17, intron 2 of 11) -55326 ENSMUSG00000084595.1 ENSMUSG00000084595 ENSMUST00000122646 n-R5s188 rRNA Interval_74811 chr17 56679510 56679916 + 0 NA intron (ENSMUSG00000002372.9, intron 1 of 5) protein_coding-intron (ENSMUSG00000002372.9, intron 1 of 15) 6329 ENSMUSG00000002372.9 ENSMUSG00000002372 ENSMUST00000232922 Ranbp3 protein_coding Interval_17139 chr10 72235154 72235335 + 0 NA Intergenic Intergenic -74077 ENSMUSG00000053830.4 ENSMUSG00000053830 ENSMUST00000217785 Gm9923 processed_pseudogene Interval_101546 chr3 4968061 4968510 + 0 NA Intergenic Intergenic -77054 ENSMUSG00000104141.1 ENSMUSG00000104141 ENSMUST00000192494 Gm6140 processed_pseudogene Interval_53483 chr14 57777427 57778123 + 0 NA Intergenic Intergenic -20649 ENSMUSG00000092784.1 ENSMUSG00000092784 ENSMUST00000175043 Mir3077 miRNA Interval_35811 chr12 30154290 30154562 + 0 NA Intergenic Intergenic -22527 ENSMUSG00000020673.14 ENSMUSG00000020673 ENSMUST00000155263 Tpo protein_coding Interval_111065 chr4 11588638 11589107 + 0 NA intron (ENSMUSG00000078773.11, intron 4 of 4) protein_coding-intron (ENSMUSG00000078773.11, intron 3 of 14) 9207 ENSMUSG00000094595.1 ENSMUSG00000094595 ENSMUST00000180239 Fsbp protein_coding Interval_29073 chr11 80174324 80174737 + 0 NA intron (ENSMUSG00000020709.15, intron 8 of 10) protein_coding-intron (ENSMUSG00000020709.15, intron 8 of 10) 3099 ENSMUSG00000086507.1 ENSMUSG00000086507 ENSMUST00000140556 Adap2os antisense Interval_52850 chr14 51082585 51083616 + 0 NA Intergenic Intergenic -8050 ENSMUSG00000072115.11 ENSMUSG00000072115 ENSMUST00000069011 Ang protein_coding Interval_75998 chr17 74275571 74275886 + 0 NA intron (ENSMUSG00000058704.9, intron 1 of 8) protein_coding-intron (ENSMUSG00000058704.9, intron 1 of 8) 19135 ENSMUSG00000058704.9 ENSMUSG00000058704 ENSMUST00000232861 Memo1 protein_coding Interval_53057 chr14 54075300 54075510 + 0 NA exon (ENSMUSG00000076867.2, exon 2 of 2) TR_V_gene-exon (ENSMUSG00000076867.2, exon 2 of 2) 500 ENSMUSG00000076867.2 ENSMUSG00000076867 ENSMUST00000103679 Trdv4 TR_V_gene Interval_167219 chr9 66271419 66272115 + 0 NA TTS (ENSMUSG00000032380.9) protein_coding-TTS (ENSMUSG00000032380.9) -78683 ENSMUSG00000038664.16 ENSMUSG00000038664 ENSMUST00000130854 Herc1 protein_coding Interval_106852 chr3 101303950 101304618 + 0 NA Intergenic Intergenic 2795 ENSMUSG00000072381.3 ENSMUSG00000072381 ENSMUST00000097146 Gm10355 processed_pseudogene Interval_12678 chr10 4284401 4285449 + 0 NA intron (ENSMUSG00000038587.10, intron 1 of 3) protein_coding-intron (ENSMUSG00000038587.10, intron 1 of 3) -49620 ENSMUSG00000038587.10 ENSMUSG00000038587 ENSMUST00000215696 Akap12 protein_coding Interval_164365 chr9 35970033 35971126 + 0 NA intron (ENSMUSG00000099201.8, intron 1 of 3) lincRNA-intron (ENSMUSG00000099201.8, intron 1 of 3) 40979 ENSMUSG00000099201.8 ENSMUSG00000099201 ENSMUST00000184873 Gm27187 lincRNA Interval_14677 chr10 38849087 38850779 + 0 NA Intergenic Intergenic -28154 ENSMUSG00000094311.1 ENSMUSG00000094311 ENSMUST00000179279 Rfpl4b protein_coding Interval_123463 chr5 32696628 32697878 + 0 NA intron (ENSMUSG00000118435.2, intron 1 of 6) unitary_pseudogene-intron (ENSMUSG00000118435.2, intron 1 of 6) 1504 ENSMUSG00000118435.2 ENSMUSG00000118435 ENSMUST00000238745 Gm50482 unitary_pseudogene Interval_26993 chr11 62248275 62249868 + 0 NA promoter-TSS (ENSMUSG00000018500.2) protein_coding-promoter-TSS (ENSMUSG00000018500.2) 87 ENSMUSG00000018500.2 ENSMUSG00000018500 ENSMUST00000018644 Adora2b protein_coding Interval_74304 chr17 48691994 48692327 + 0 NA TTS (ENSMUSG00000088483.1) misc_RNA-TTS (ENSMUSG00000088483.1) 547 ENSMUSG00000088483.1 ENSMUSG00000088483 ENSMUST00000157858 Gm23642 misc_RNA Interval_25915 chr11 52533971 52534799 + 0 NA Intergenic Intergenic -47075 ENSMUSG00000083129.1 ENSMUSG00000083129 ENSMUST00000118245 Gm12210 processed_pseudogene Interval_159240 chr8 92065070 92066646 + 0 NA Intergenic Intergenic 25941 ENSMUSG00000065636.1 ENSMUSG00000065636 ENSMUST00000083702 Gm24254 snRNA Interval_129832 chr5 122636069 122638415 + 0 NA Intergenic Intergenic -13182 ENSMUSG00000029468.17 ENSMUSG00000029468 ENSMUST00000197042 P2rx7 protein_coding Interval_36175 chr12 37844128 37844959 + 0 NA intron (ENSMUSG00000036095.11, intron 1 of 1) protein_coding-intron (ENSMUSG00000036095.11, intron 1 of 1) 26817 ENSMUSG00000036095.11 ENSMUSG00000036095 ENSMUST00000220606 Dgkb protein_coding Interval_127472 chr5 104219049 104219567 + 0 NA Intergenic Intergenic 16695 ENSMUSG00000029307.7 ENSMUSG00000029307 ENSMUST00000066708 Dmp1 protein_coding Interval_25257 chr11 45919191 45919458 + 0 NA Intergenic Intergenic 25611 ENSMUSG00000044847.13 ENSMUSG00000044847 ENSMUST00000062458 Lsm11 protein_coding Interval_62920 chr15 97920148 97920381 + 0 NA Intergenic Intergenic -9634 ENSMUSG00000022479.15 ENSMUSG00000022479 ENSMUST00000173611 Vdr protein_coding Interval_17830 chr10 80304627 80305559 + 0 NA intron (ENSMUSG00000020135.13, intron 6 of 14) protein_coding-intron (ENSMUSG00000020135.13, intron 5 of 13) 6002 ENSMUSG00000020135.13 ENSMUSG00000020135 ENSMUST00000020349 Apc2 protein_coding Interval_84701 chr19 15603359 15604239 + 0 NA Intergenic Intergenic -76205 ENSMUSG00000094850.1 ENSMUSG00000094850 ENSMUST00000083389 Gm24319 snRNA Interval_75597 chr17 69193010 69193247 + 0 NA intron (ENSMUSG00000024044.19, intron 1 of 19) protein_coding-intron (ENSMUSG00000024044.19, intron 1 of 21) 66128 ENSMUSG00000024044.19 ENSMUSG00000024044 ENSMUST00000223565 Epb41l3 protein_coding Interval_142241 chr6 139662466 139662819 + 0 NA Intergenic Intergenic -74253 ENSMUSG00000030228.18 ENSMUSG00000030228 ENSMUST00000191591 Pik3c2g protein_coding Interval_7536 chr1 132075225 132076060 + 0 NA Intergenic Intergenic -24997 ENSMUSG00000088779.1 ENSMUSG00000088779 ENSMUST00000158154 Gm26034 snRNA Interval_144638 chr7 27275990 27276672 + 0 NA intron (ENSMUSG00000063160.12, intron 5 of 7) protein_coding-intron (ENSMUSG00000063160.12, intron 7 of 9) -3939 ENSMUSG00000083622.1 ENSMUSG00000083622 ENSMUST00000122093 Gm15570 processed_pseudogene Interval_140682 chr6 120539148 120540072 + 0 NA Intergenic Intergenic -8308 ENSMUSG00000058979.7 ENSMUSG00000058979 ENSMUST00000204390 Hdhd5 protein_coding Interval_156799 chr8 60482214 60482985 + 0 NA intron (ENSMUSG00000070023.5, intron 2 of 2) protein_coding-intron (ENSMUSG00000070023.5, intron 2 of 2) 20599 ENSMUSG00000070023.5 ENSMUSG00000070023 ENSMUST00000093494 Gm10283 protein_coding Interval_70917 chr17 15918496 15919245 + 0 NA Intergenic Intergenic 73590 ENSMUSG00000116545.1 ENSMUSG00000116545 ENSMUST00000231929 Eif3s6-ps3 processed_pseudogene Interval_146958 chr7 56258866 56259732 + 0 NA intron (ENSMUSG00000030450.11, intron 2 of 3) protein_coding-intron (ENSMUSG00000030450.11, intron 2 of 23) -16149 ENSMUSG00000108773.1 ENSMUSG00000108773 ENSMUST00000206278 Gm44506 antisense Interval_18638 chr10 88745988 88746191 + 0 NA TTS (ENSMUSG00000004356.8) protein_coding-TTS (ENSMUSG00000004356.8) -14988 ENSMUSG00000069540.4 ENSMUSG00000069540 ENSMUST00000092231 Gm4925 transcribed_processed_pseudogene Interval_4991 chr1 83746181 83746452 + 0 NA intron (ENSMUSG00000100580.6, intron 3 of 4) lincRNA-intron (ENSMUSG00000100580.6, intron 3 of 4) -49596 ENSMUSG00000094946.1 ENSMUSG00000094946 ENSMUST00000178653 Gm25754 miRNA Interval_18783 chr10 90722789 90723004 + 0 NA intron (ENSMUSG00000058589.14, intron 4 of 11) protein_coding-intron (ENSMUSG00000058589.14, intron 3 of 11) -6064 ENSMUSG00000112153.1 ENSMUSG00000112153 ENSMUST00000218673 Gm47591 sense_intronic Interval_2270 chr1 37566565 37567109 + 0 NA Intergenic Intergenic -30586 ENSMUSG00000026110.15 ENSMUSG00000026110 ENSMUST00000195598 Mgat4a protein_coding Interval_35406 chr12 21385460 21385916 + 0 NA Intergenic Intergenic 11923 ENSMUSG00000116819.1 ENSMUSG00000116819 ENSMUST00000232122 Gm49586 bidirectional_promoter_lncRNA Interval_154757 chr8 23157332 23158870 + 0 NA exon (ENSMUSG00000063672.7, exon 3 of 3) protein_coding-exon (ENSMUSG00000063672.7, exon 3 of 3) 4832 ENSMUSG00000063672.7 ENSMUSG00000063672 ENSMUST00000071588 Nkx6-3 protein_coding Interval_116695 chr4 116697558 116697996 + 0 NA intron (ENSMUSG00000028691.12, intron 5 of 5) protein_coding-intron (ENSMUSG00000028691.12, intron 4 of 4) 10511 ENSMUSG00000028690.4 ENSMUSG00000028690 ENSMUST00000143330 Mmachc protein_coding Interval_122515 chr5 23514381 23515447 + 0 NA intron (ENSMUSG00000062604.11, intron 12 of 14) protein_coding-intron (ENSMUSG00000062604.11, intron 12 of 14) -27191 ENSMUSG00000088170.1 ENSMUSG00000088170 ENSMUST00000157545 Gm25219 misc_RNA Interval_25459 chr11 48721969 48723122 + 0 NA Intergenic Intergenic 13016 ENSMUSG00000083460.1 ENSMUSG00000083460 ENSMUST00000118655 Gm12182 processed_pseudogene Interval_39074 chr12 84867794 84868282 + 0 NA intron (ENSMUSG00000002020.15, intron 2 of 11) protein_coding-intron (ENSMUSG00000002020.15, intron 2 of 35) -7731 ENSMUSG00000092130.2 ENSMUSG00000092130 ENSMUST00000220643 D030025P21Rik antisense Interval_24626 chr11 35407574 35408265 + 0 NA intron (ENSMUSG00000056427.10, intron 2 of 3) protein_coding-intron (ENSMUSG00000056427.10, intron 4 of 35) 57850 ENSMUSG00000086311.1 ENSMUSG00000086311 ENSMUST00000124503 Gm12122 sense_intronic Interval_14385 chr10 32277275 32277580 + 0 NA intron (ENSMUSG00000069670.8, intron 3 of 3) protein_coding-intron (ENSMUSG00000069670.8, intron 3 of 6) 2266 ENSMUSG00000112409.1 ENSMUSG00000112409 ENSMUST00000219077 C030006N10Rik TEC Interval_59656 chr15 57616581 57617529 + 0 NA Intergenic Intergenic -78674 ENSMUSG00000071757.10 ENSMUSG00000071757 ENSMUST00000160990 Zhx2 protein_coding Interval_4188 chr1 71506329 71506530 + 0 NA Intergenic Intergenic -12615 ENSMUSG00000101617.1 ENSMUSG00000101617 ENSMUST00000186254 Gm6947 processed_pseudogene Interval_108831 chr3 132130049 132130218 + 0 NA intron (ENSMUSG00000028031.6, intron 1 of 3) protein_coding-intron (ENSMUSG00000028031.6, intron 1 of 3) 44841 ENSMUSG00000028031.6 ENSMUSG00000028031 ENSMUST00000029665 Dkk2 protein_coding Interval_137761 chr6 82188600 82189385 + 0 NA Intergenic Intergenic -53182 ENSMUSG00000108224.1 ENSMUSG00000108224 ENSMUST00000204563 Gm31861 processed_pseudogene Interval_125875 chr5 75214600 75215088 + 0 NA Intergenic Intergenic -31599 ENSMUSG00000106704.1 ENSMUSG00000106704 ENSMUST00000201331 Gm42799 processed_pseudogene Interval_153648 chr8 4266793 4268058 + 0 NA promoter-TSS (ENSMUSG00000002949.15) protein_coding-promoter-TSS (ENSMUSG00000002949.15) -7428 ENSMUSG00000087876.1 ENSMUSG00000087876 ENSMUST00000157251 Gm26102 misc_RNA Interval_159672 chr8 96512050 96513154 + 0 NA exon (ENSMUSG00000110717.1, exon 1 of 2) lincRNA-exon (ENSMUSG00000110717.1, exon 1 of 2) 260 ENSMUSG00000110717.1 ENSMUSG00000110717 ENSMUST00000212351 1700047G07Rik lincRNA Interval_28507 chr11 76392497 76393693 + 0 NA intron (ENSMUSG00000020844.6, intron 1 of 1) protein_coding-intron (ENSMUSG00000020844.6, intron 1 of 7) 5973 ENSMUSG00000020844.6 ENSMUSG00000020844 ENSMUST00000131472 Nxn protein_coding Interval_94928 chr2 101885418 101886672 + 0 NA promoter-TSS (ENSMUSG00000027163.13) protein_coding-promoter-TSS (ENSMUSG00000027163.13) -218 ENSMUSG00000027163.13 ENSMUSG00000027163 ENSMUST00000156799 Commd9 protein_coding Interval_27433 chr11 67652332 67653025 + 0 NA exon (ENSMUSG00000033066.16, exon 1 of 10) protein_coding-exon (ENSMUSG00000033066.16, exon 1 of 10) -42648 ENSMUSG00000020907.1 ENSMUSG00000020907 ENSMUST00000021290 Rcvrn protein_coding Interval_56295 chr14 116836980 116837767 + 0 NA Intergenic Intergenic 87158 ENSMUSG00000104296.1 ENSMUSG00000104296 ENSMUST00000193536 Gm38045 TEC Interval_19525 chr10 102157716 102157993 + 0 NA intron (ENSMUSG00000019888.16, intron 4 of 6) protein_coding-intron (ENSMUSG00000019888.16, intron 3 of 5) -1051 ENSMUSG00000019888.16 ENSMUSG00000019888 ENSMUST00000120748 Mgat4c protein_coding Interval_85289 chr19 24415585 24416616 + 0 NA promoter-TSS (ENSMUSG00000085003.1) antisense-promoter-TSS (ENSMUSG00000085003.1) 91 ENSMUSG00000085003.1 ENSMUSG00000085003 ENSMUST00000126936 Pip5k1bos antisense Interval_34503 chr12 4705640 4705914 + 0 NA intron (ENSMUSG00000020640.10, intron 32 of 39) protein_coding-intron (ENSMUSG00000020640.10, intron 31 of 38) -15851 ENSMUSG00000091732.1 ENSMUSG00000091732 ENSMUST00000080062 Gm17541 processed_pseudogene Interval_88300 chr2 3493468 3494082 + 0 NA intron (ENSMUSG00000109865.1, intron 10 of 13) protein_coding-intron (ENSMUSG00000109865.1, intron 10 of 13) -1733 ENSMUSG00000109865.1 ENSMUSG00000109865 ENSMUST00000148167 Hspa14 protein_coding Interval_145389 chr7 34398744 34399119 + 0 NA Intergenic Intergenic 9199 ENSMUSG00000108732.1 ENSMUSG00000108732 ENSMUST00000205403 2310043P16Rik TEC Interval_112703 chr4 44232811 44234660 + 0 NA promoter-TSS (ENSMUSG00000035696.15) protein_coding-promoter-TSS (ENSMUSG00000035696.15) -12468 ENSMUSG00000092677.1 ENSMUSG00000092677 ENSMUST00000174936 Mir5106 miRNA Interval_116203 chr4 108659228 108659868 + 0 NA intron (ENSMUSG00000034557.14, intron 13 of 17) protein_coding-intron (ENSMUSG00000034557.14, intron 11 of 15) -22107 ENSMUSG00000091985.1 ENSMUSG00000091985 ENSMUST00000170933 Gm17354 lincRNA Interval_53800 chr14 61913671 61913972 + 0 NA Intergenic Intergenic -7555 ENSMUSG00000114706.1 ENSMUSG00000114706 ENSMUST00000224682 Gm47952 processed_pseudogene Interval_29813 chr11 87009159 87010970 + 0 NA Intergenic Intergenic -12801 ENSMUSG00000088816.1 ENSMUSG00000088816 ENSMUST00000158191 Gm22387 scaRNA Interval_83082 chr18 81125761 81126169 + 0 NA Intergenic Intergenic 42901 ENSMUSG00000118262.1 ENSMUSG00000118262 ENSMUST00000237649 Gm50423 lincRNA Interval_132568 chr5 146376544 146377220 + 0 NA Intergenic Intergenic -78727 ENSMUSG00000029636.11 ENSMUSG00000029636 ENSMUST00000238592 Wasf3 protein_coding Interval_163751 chr9 25262538 25263227 + 0 NA intron (ENSMUSG00000001833.17, intron 1 of 13) protein_coding-intron (ENSMUSG00000001833.17, intron 1 of 13) 10216 ENSMUSG00000001833.17 ENSMUSG00000001833 ENSMUST00000214360 Septin7 protein_coding Interval_12667 chr10 4233136 4233614 + 0 NA Intergenic Intergenic -20261 ENSMUSG00000111266.1 ENSMUSG00000111266 ENSMUST00000213553 Gm30570 lincRNA Interval_88582 chr2 6362935 6363346 + 0 NA intron (ENSMUSG00000039046.15, intron 1 of 13) protein_coding-intron (ENSMUSG00000039046.15, intron 1 of 13) -40060 ENSMUSG00000118578.1 ENSMUSG00000118578 ENSMUST00000238876 AL845275.1 protein_coding Interval_126261 chr5 85066743 85068052 + 0 NA Intergenic Intergenic -200552 ENSMUSG00000106389.1 ENSMUSG00000106389 ENSMUST00000196930 Gm21006 processed_pseudogene Interval_87058 chr19 45847423 45847740 + 0 NA intron (ENSMUSG00000039901.10, intron 23 of 25) protein_coding-intron (ENSMUSG00000039901.10, intron 23 of 25) 3964 ENSMUSG00000117956.1 ENSMUSG00000117956 ENSMUST00000235344 Gm50196 antisense Interval_160118 chr8 106560817 106561872 + 0 NA Intergenic Intergenic 12006 ENSMUSG00000060019.6 ENSMUSG00000060019 ENSMUST00000073722 Gm10073 processed_pseudogene Interval_15163 chr10 43002172 43003607 + 0 NA exon (ENSMUSG00000038248.8, exon 7 of 7) protein_coding-exon (ENSMUSG00000038248.8, exon 7 of 7) -32104 ENSMUSG00000111171.1 ENSMUSG00000111171 ENSMUST00000213469 Gm47815 antisense Interval_104114 chr3 58700636 58702594 + 0 NA intron (ENSMUSG00000097725.4, intron 2 of 8) lincRNA-intron (ENSMUSG00000097725.4, intron 2 of 8) 4054 ENSMUSG00000105226.1 ENSMUSG00000105226 ENSMUST00000197219 A930028O11Rik TEC Interval_168312 chr9 78600690 78603013 + 0 NA Intergenic Intergenic -13824 ENSMUSG00000049624.14 ENSMUSG00000049624 ENSMUST00000119213 Slc17a5 protein_coding Interval_152369 chr7 132477831 132478770 + 0 NA intron (ENSMUSG00000030849.18, intron 2 of 6) protein_coding-intron (ENSMUSG00000030849.18, intron 2 of 6) -5358 ENSMUSG00000108858.1 ENSMUSG00000108858 ENSMUST00000209135 Gm4587 processed_pseudogene Interval_73607 chr17 41090109 41090289 + 0 NA intron (ENSMUSG00000117210.1, intron 1 of 3) lincRNA-intron (ENSMUSG00000117210.1, intron 1 of 3) -10839 ENSMUSG00000117062.1 ENSMUSG00000117062 ENSMUST00000232966 Ldha-ps3 processed_pseudogene Interval_15926 chr10 59356216 59356516 + 0 NA intron (ENSMUSG00000019916.14, intron 9 of 14) protein_coding-intron (ENSMUSG00000019916.14, intron 9 of 14) 32998 ENSMUSG00000019916.14 ENSMUSG00000019916 ENSMUST00000105466 P4ha1 protein_coding Interval_22190 chr11 7016255 7016812 + 0 NA Intergenic Intergenic -143349 ENSMUSG00000020431.5 ENSMUSG00000020431 ENSMUST00000135398 Adcy1 protein_coding Interval_81095 chr18 53853478 53853699 + 0 NA Intergenic Intergenic -8600 ENSMUSG00000073563.3 ENSMUSG00000073563 ENSMUST00000236399 Csnk1g3 protein_coding Interval_53883 chr14 63122143 63124457 + 0 NA exon (ENSMUSG00000021939.8, exon 1 of 1) protein_coding-exon (ENSMUSG00000021939.8, exon 1 of 1) 786 ENSMUSG00000021939.8 ENSMUSG00000021939 ENSMUST00000225540 Ctsb protein_coding Interval_105115 chr3 81689369 81689578 + 0 NA Intergenic Intergenic -32203 ENSMUSG00000104732.1 ENSMUSG00000104732 ENSMUST00000198290 Gm43346 lincRNA Interval_12913 chr10 8054492 8055595 + 0 NA Intergenic Intergenic -33751 ENSMUSG00000112360.1 ENSMUSG00000112360 ENSMUST00000218165 Gm48614 lincRNA Interval_166094 chr9 56574447 56575365 + 0 NA Intergenic Intergenic 31150 ENSMUSG00000111201.1 ENSMUSG00000111201 ENSMUST00000216151 Gm47178 processed_pseudogene Interval_21802 chr11 4455151 4455593 + 0 NA Intergenic Intergenic -28110 ENSMUSG00000020419.11 ENSMUSG00000020419 ENSMUST00000124249 Hormad2 protein_coding Interval_115548 chr4 100639777 100641304 + 0 NA Intergenic Intergenic 59262 ENSMUSG00000082601.1 ENSMUSG00000082601 ENSMUST00000118145 Gm12700 processed_pseudogene Interval_81113 chr18 54023244 54023976 + 0 NA Intergenic Intergenic 7698 ENSMUSG00000117769.1 ENSMUSG00000117769 ENSMUST00000237377 Gm8594 processed_pseudogene Interval_93767 chr2 76715140 76715597 + 0 NA exon (ENSMUSG00000051747.15, exon 184 of 191) protein_coding-exon (ENSMUSG00000051747.15, exon 184 of 191) -7408 ENSMUSG00000086354.2 ENSMUSG00000086354 ENSMUST00000156809 Gm13938 antisense Interval_53733 chr14 61284946 61285207 + 0 NA promoter-TSS (ENSMUSG00000114920.1) processed_pseudogene-promoter-TSS (ENSMUSG00000114920.1) -288 ENSMUSG00000114920.1 ENSMUSG00000114920 ENSMUST00000225947 Gm19097 processed_pseudogene Interval_136454 chr6 54602081 54602642 + 0 NA promoter-TSS (ENSMUSG00000005225.15) protein_coding-promoter-TSS (ENSMUSG00000005225.15) 7250 ENSMUSG00000005225.15 ENSMUSG00000005225 ENSMUST00000101385 Plekha8 protein_coding Interval_166146 chr9 57033724 57034506 + 0 NA intron (ENSMUSG00000032290.7, intron 6 of 12) protein_coding-intron (ENSMUSG00000032290.7, intron 6 of 12) 11883 ENSMUSG00000032290.7 ENSMUSG00000032290 ENSMUST00000215707 Ptpn9 protein_coding Interval_126523 chr5 89548806 89550297 + 0 NA intron (ENSMUSG00000035528.4, intron 1 of 3) protein_coding-intron (ENSMUSG00000035528.4, intron 1 of 3) 22122 ENSMUSG00000035528.4 ENSMUSG00000035528 ENSMUST00000048557 Npffr2 protein_coding Interval_56716 chr14 121596143 121596329 + 0 NA intron (ENSMUSG00000025558.19, intron 35 of 55) protein_coding-intron (ENSMUSG00000025558.19, intron 35 of 53) 72692 ENSMUSG00000115408.1 ENSMUSG00000115408 ENSMUST00000226518 Gm4529 processed_pseudogene Interval_130789 chr5 130448376 130450411 + 0 NA exon (ENSMUSG00000060371.12, exon 1 of 6) protein_coding-exon (ENSMUSG00000060371.12, exon 1 of 6) 64696 ENSMUSG00000060371.12 ENSMUSG00000060371 ENSMUST00000111288 Caln1 protein_coding Interval_316 chr1 3670580 3672599 + 0 NA promoter-TSS (ENSMUSG00000051951.5) protein_coding-promoter-TSS (ENSMUSG00000051951.5) -8566 ENSMUSG00000102348.1 ENSMUSG00000102348 ENSMUST00000193244 Gm10568 TEC Interval_45437 chr13 55166557 55167813 + 0 NA intron (ENSMUSG00000005320.9, intron 15 of 17) protein_coding-intron (ENSMUSG00000005320.9, intron 15 of 17) 11502 ENSMUSG00000005320.9 ENSMUSG00000005320 ENSMUST00000162167 Fgfr4 protein_coding Interval_104445 chr3 65750065 65750310 + 0 NA intron (ENSMUSG00000074579.14, intron 6 of 12) protein_coding-intron (ENSMUSG00000074579.14, intron 6 of 6) 21430 ENSMUSG00000065330.1 ENSMUSG00000065330 ENSMUST00000083396 Gm25755 snRNA Interval_56404 chr14 118524857 118525260 + 0 NA intron (ENSMUSG00000032849.14, intron 24 of 29) protein_coding-intron (ENSMUSG00000032849.14, intron 25 of 30) -39014 ENSMUSG00000115075.1 ENSMUSG00000115075 ENSMUST00000227627 Gm49033 processed_pseudogene Interval_156848 chr8 61091351 61091594 + 0 NA intron (ENSMUSG00000031644.19, intron 25 of 34) protein_coding-intron (ENSMUSG00000031644.19, intron 23 of 32) 16107 ENSMUSG00000109693.1 ENSMUSG00000109693 ENSMUST00000209845 Gm45483 TEC Interval_158479 chr8 83940215 83941377 + 0 NA TTS (ENSMUSG00000013033.16) protein_coding-TTS (ENSMUSG00000013033.16) -6739 ENSMUSG00000074219.3 ENSMUSG00000074219 ENSMUST00000238531 Gm10644 bidirectional_promoter_lncRNA Interval_120044 chr4 141505816 141507171 + 0 NA intron (ENSMUSG00000040761.16, intron 1 of 1) protein_coding-intron (ENSMUSG00000040761.16, intron 3 of 14) -18181 ENSMUSG00000040761.16 ENSMUSG00000040761 ENSMUST00000152081 Spen protein_coding Interval_128562 chr5 114041271 114041853 + 0 NA intron (ENSMUSG00000042078.14, intron 3 of 4) protein_coding-intron (ENSMUSG00000042078.14, intron 10 of 15) -23952 ENSMUSG00000029592.11 ENSMUSG00000029592 ENSMUST00000198457 Usp30 protein_coding Interval_72554 chr17 30645882 30646179 + 0 NA intron (ENSMUSG00000033826.10, intron 5 of 10) protein_coding-intron (ENSMUSG00000033826.10, intron 5 of 92) -19125 ENSMUSG00000099474.1 ENSMUSG00000099474 ENSMUST00000188852 1700097N02Rik bidirectional_promoter_lncRNA Interval_61811 chr15 84313490 84315451 + 0 NA exon (ENSMUSG00000022438.6, exon 13 of 13) protein_coding-exon (ENSMUSG00000022438.6, exon 13 of 13) 8882 ENSMUSG00000089267.1 ENSMUSG00000089267 ENSMUST00000158642 Gm22890 snoRNA Interval_117771 chr4 126131412 126131730 + 0 NA intron (ENSMUSG00000042608.15, intron 8 of 12) protein_coding-intron (ENSMUSG00000042608.15, intron 6 of 10) -14408 ENSMUSG00000086961.1 ENSMUSG00000086961 ENSMUST00000122969 Gm12946 antisense Interval_30623 chr11 95532064 95534244 + 0 NA Intergenic Intergenic -18584 ENSMUSG00000046719.7 ENSMUSG00000046719 ENSMUST00000058866 Nxph3 protein_coding Interval_141197 chr6 125528266 125529767 + 0 NA Intergenic Intergenic -23947 ENSMUSG00000001930.17 ENSMUSG00000001930 ENSMUST00000146264 Vwf protein_coding Interval_69113 chr16 90749653 90750560 + 0 NA TTS (ENSMUSG00000039956.9) protein_coding-TTS (ENSMUSG00000039956.9) 11782 ENSMUSG00000039956.9 ENSMUSG00000039956 ENSMUST00000038197 Mrap protein_coding Interval_85319 chr19 24634397 24634995 + 0 NA Intergenic Intergenic -39312 ENSMUSG00000048572.5 ENSMUSG00000048572 ENSMUST00000057243 Tmem252 protein_coding Interval_124566 chr5 51030568 51030875 + 0 NA Intergenic Intergenic -21660 ENSMUSG00000106267.1 ENSMUSG00000106267 ENSMUST00000199785 Gm40319 processed_pseudogene Interval_172647 chrX 39667148 39667420 + 0 NA Intergenic Intergenic 83932 ENSMUSG00000082147.1 ENSMUSG00000082147 ENSMUST00000119444 Gm14570 processed_pseudogene Interval_92590 chr2 60922560 60922850 + 0 NA intron (ENSMUSG00000026970.16, intron 1 of 13) protein_coding-intron (ENSMUSG00000026970.16, intron 1 of 13) -41267 ENSMUSG00000026970.16 ENSMUSG00000026970 ENSMUST00000128866 Rbms1 protein_coding Interval_115056 chr4 89032781 89033288 + 0 NA intron (ENSMUSG00000117251.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000117251.1, intron 1 of 1) 6158 ENSMUSG00000117251.1 ENSMUSG00000117251 ENSMUST00000232991 Gm49891 lincRNA Interval_85538 chr19 28195444 28196251 + 0 NA Intergenic Intergenic -49544 ENSMUSG00000117862.1 ENSMUSG00000117862 ENSMUST00000236360 Gm35781 processed_pseudogene Interval_54330 chr14 67715218 67716833 + 0 NA promoter-TSS (ENSMUSG00000034327.17) protein_coding-promoter-TSS (ENSMUSG00000034327.17) -260 ENSMUSG00000034327.17 ENSMUSG00000034327 ENSMUST00000156700 Kctd9 protein_coding Interval_8691 chr1 148481287 148481624 + 0 NA Intergenic Intergenic -17053 ENSMUSG00000101208.1 ENSMUSG00000101208 ENSMUST00000189771 Gm19891 processed_pseudogene Interval_64704 chr16 14352435 14353626 + 0 NA Intergenic Intergenic -5402 ENSMUSG00000116025.1 ENSMUSG00000116025 ENSMUST00000229451 Gm49517 processed_pseudogene Interval_149436 chr7 98513094 98514031 + 0 NA Intergenic Intergenic 6608 ENSMUSG00000065803.1 ENSMUSG00000065803 ENSMUST00000083869 Gm23040 snRNA Interval_123445 chr5 32616341 32618825 + 0 NA intron (ENSMUSG00000014932.15, intron 1 of 11) protein_coding-intron (ENSMUSG00000014932.15, intron 1 of 11) -5778 ENSMUSG00000107277.1 ENSMUSG00000107277 ENSMUST00000202073 Gm10461 TEC Interval_127677 chr5 106560739 106561712 + 0 NA intron (ENSMUSG00000098302.1, intron 2 of 2) lincRNA-intron (ENSMUSG00000099061.1, intron 1 of 1) 13490 ENSMUSG00000099061.1 ENSMUSG00000099061 ENSMUST00000124394 Gm28050 lincRNA Interval_154181 chr8 13248185 13248480 + 0 NA intron (ENSMUSG00000031448.12, intron 1 of 3) protein_coding-intron (ENSMUSG00000031448.12, intron 2 of 6) 5830 ENSMUSG00000031448.12 ENSMUSG00000031448 ENSMUST00000171619 Adprhl1 protein_coding Interval_9661 chr1 160814945 160815363 + 0 NA Intergenic Intergenic 16472 ENSMUSG00000102852.1 ENSMUSG00000102852 ENSMUST00000195784 Gm37083 lincRNA Interval_87250 chr19 47184187 47184968 + 0 NA intron (ENSMUSG00000006435.16, intron 1 of 2) protein_coding-intron (ENSMUSG00000006435.16, intron 1 of 5) 5555 ENSMUSG00000006435.16 ENSMUSG00000006435 ENSMUST00000111807 Neurl1a protein_coding Interval_20286 chr10 116669847 116670103 + 0 NA Intergenic Intergenic -4616 ENSMUSG00000097104.1 ENSMUSG00000097104 ENSMUST00000181656 Gm26579 lincRNA Interval_124646 chr5 52805783 52806574 + 0 NA intron (ENSMUSG00000029179.14, intron 2 of 7) protein_coding-intron (ENSMUSG00000029179.14, intron 6 of 11) 23062 ENSMUSG00000029179.14 ENSMUSG00000029179 ENSMUST00000143745 Zcchc4 protein_coding Interval_166674 chr9 61824639 61824835 + 0 NA Intergenic Intergenic -26967 ENSMUSG00000110968.1 ENSMUSG00000110968 ENSMUST00000213861 Gm19208 processed_pseudogene Interval_134107 chr6 20350713 20351075 + 0 NA Intergenic Intergenic 562841 ENSMUSG00000107067.1 ENSMUSG00000107067 ENSMUST00000201774 Gm42581 processed_pseudogene Interval_98833 chr2 155405592 155406059 + 0 NA exon (ENSMUSG00000038369.14, exon 10 of 14) protein_coding-exon (ENSMUSG00000038369.14, exon 10 of 14) -2264 ENSMUSG00000038369.14 ENSMUSG00000038369 ENSMUST00000134508 Ncoa6 protein_coding Interval_37408 chr12 67619929 67620778 + 0 NA Intergenic Intergenic 8057 ENSMUSG00000084448.1 ENSMUSG00000084448 ENSMUST00000122499 Gm26256 snRNA Interval_173646 chrX 101448732 101449591 + 0 NA promoter-TSS (ENSMUSG00000031312.5) protein_coding-promoter-TSS (ENSMUSG00000031312.5) -2950 ENSMUSG00000031312.5 ENSMUSG00000031312 ENSMUST00000143946 Itgb1bp2 protein_coding Interval_13331 chr10 15299545 15300812 + 0 NA promoter-TSS (ENSMUSG00000112928.1) lincRNA-promoter-TSS (ENSMUSG00000112928.1) -53 ENSMUSG00000112928.1 ENSMUSG00000112928 ENSMUST00000217695 Gm47710 lincRNA Interval_157346 chr8 69749554 69750387 + 0 NA promoter-TSS (ENSMUSG00000092260.7) protein_coding-promoter-TSS (ENSMUSG00000092260.7) 0 ENSMUSG00000092260.7 ENSMUSG00000092260 ENSMUST00000154063 Zfp963 protein_coding Interval_100536 chr2 170002512 170003007 + 0 NA intron (ENSMUSG00000047907.11, intron 1 of 1) protein_coding-intron (ENSMUSG00000047907.11, intron 1 of 1) -39572 ENSMUSG00000103935.1 ENSMUSG00000103935 ENSMUST00000194482 AY702102 TEC Interval_100616 chr2 170482157 170482603 + 0 NA TTS (ENSMUSG00000038567.5) protein_coding-TTS (ENSMUSG00000038567.5) 14765 ENSMUSG00000038567.5 ENSMUSG00000038567 ENSMUST00000038824 Cyp24a1 protein_coding Interval_154268 chr8 13937293 13937950 + 0 NA promoter-TSS (ENSMUSG00000038365.8) protein_coding-promoter-TSS (ENSMUSG00000038365.8) 10642 ENSMUSG00000038365.8 ENSMUSG00000038365 ENSMUST00000209310 Fbxo25 protein_coding Interval_108821 chr3 131960742 131961261 + 0 NA intron (ENSMUSG00000105331.1, intron 1 of 3) lincRNA-intron (ENSMUSG00000105331.1, intron 1 of 3) 42742 ENSMUSG00000087877.1 ENSMUSG00000087877 ENSMUST00000157252 Gm26103 snRNA Interval_79327 chr18 30573203 30573472 + 0 NA Intergenic Intergenic 35553 ENSMUSG00000117526.1 ENSMUSG00000117526 ENSMUST00000235078 Gm41780 processed_pseudogene Interval_33751 chr11 118262025 118262471 + 0 NA TTS (ENSMUSG00000033909.17) protein_coding-TTS (ENSMUSG00000033909.17) 27824 ENSMUSG00000033909.17 ENSMUSG00000033909 ENSMUST00000151433 Usp36 protein_coding Interval_80225 chr18 38383998 38385135 + 0 NA Intergenic Intergenic -24028 ENSMUSG00000118140.1 ENSMUSG00000118140 ENSMUST00000235767 Gm4949 processed_pseudogene Interval_2982 chr1 51870523 51871867 + 0 NA intron (ENSMUSG00000018417.14, intron 2 of 6) protein_coding-intron (ENSMUSG00000018417.14, intron 2 of 30) 8413 ENSMUSG00000100313.1 ENSMUSG00000100313 ENSMUST00000186817 Gm28323 sense_intronic Interval_96387 chr2 122101923 122102518 + 0 NA intron (ENSMUSG00000033396.13, intron 7 of 12) protein_coding-intron (ENSMUSG00000033396.13, intron 7 of 39) 16155 ENSMUSG00000033396.13 ENSMUSG00000033396 ENSMUST00000135847 Spg11 protein_coding Interval_31077 chr11 98019317 98019758 + 0 NA intron (ENSMUSG00000020882.17, intron 2 of 8) protein_coding-intron (ENSMUSG00000020882.17, intron 2 of 13) -3418 ENSMUSG00000086716.1 ENSMUSG00000086716 ENSMUST00000123784 Gm11629 processed_transcript Interval_93193 chr2 71048494 71049465 + 0 NA intron (ENSMUSG00000041975.17, intron 1 of 10) protein_coding-intron (ENSMUSG00000041975.17, intron 1 of 5) -6765 ENSMUSG00000041966.18 ENSMUSG00000041966 ENSMUST00000132619 Dcaf17 protein_coding Interval_48029 chr13 95376843 95377169 + 0 NA Intergenic Intergenic -1672 ENSMUSG00000021681.8 ENSMUSG00000021681 ENSMUST00000161671 Aggf1 protein_coding Interval_150159 chr7 107471577 107471786 + 0 NA intron (ENSMUSG00000062542.11, intron 3 of 6) protein_coding-intron (ENSMUSG00000062542.11, intron 3 of 6) -32381 ENSMUSG00000062542.11 ENSMUSG00000062542 ENSMUST00000127444 Syt9 protein_coding Interval_65991 chr16 30763160 30763404 + 0 NA Intergenic Intergenic 29973 ENSMUSG00000116570.1 ENSMUSG00000116570 ENSMUST00000231445 Gm49754 lincRNA Interval_8869 chr1 151675797 151677365 + 0 NA promoter-TSS (ENSMUSG00000026483.13) protein_coding-promoter-TSS (ENSMUSG00000026483.13) 78437 ENSMUSG00000100594.1 ENSMUSG00000100594 ENSMUST00000186444 2810414N06Rik lincRNA Interval_167038 chr9 64749000 64749309 + 0 NA Intergenic Intergenic -22424 ENSMUSG00000104953.1 ENSMUSG00000104953 ENSMUST00000197528 Gm47308 miRNA Interval_17533 chr10 77572020 77573300 + 0 NA Intergenic Intergenic -9063 ENSMUSG00000009291.13 ENSMUSG00000009291 ENSMUST00000167006 Pttg1ip protein_coding Interval_65772 chr16 28564087 28565212 + 0 NA exon (ENSMUSG00000022523.10, exon 1 of 4) protein_coding-exon (ENSMUSG00000022523.10, exon 1 of 4) 35394 ENSMUSG00000076064.1 ENSMUSG00000076064 ENSMUST00000102110 Mir690 miRNA Interval_132877 chr5 148466219 148467633 + 0 NA Intergenic Intergenic 10088 ENSMUSG00000106956.1 ENSMUSG00000106956 ENSMUST00000202977 Gm19617 unprocessed_pseudogene Interval_12454 chr1 193587647 193589367 + 0 NA Intergenic Intergenic -78333 ENSMUSG00000097850.2 ENSMUSG00000097850 ENSMUST00000180420 Mir205hg lincRNA Interval_44354 chr13 44062343 44064451 + 0 NA Intergenic Intergenic 36563 ENSMUSG00000113276.1 ENSMUSG00000113276 ENSMUST00000223038 Gm33630 lincRNA Interval_16890 chr10 69531627 69532570 + 0 NA intron (ENSMUSG00000069601.14, intron 2 of 42) protein_coding-intron (ENSMUSG00000069601.14, intron 2 of 2) 34263 ENSMUSG00000112729.1 ENSMUSG00000112729 ENSMUST00000220152 Gm46231 processed_pseudogene Interval_50430 chr14 13016381 13017095 + 0 NA Intergenic Intergenic -13632 ENSMUSG00000114421.1 ENSMUSG00000114421 ENSMUST00000224173 Gm48526 lincRNA Interval_134051 chr6 18121231 18121562 + 0 NA Intergenic Intergenic -9435 ENSMUSG00000107177.1 ENSMUSG00000107177 ENSMUST00000202462 Gm43845 TEC Interval_124202 chr5 40406849 40407674 + 0 NA Intergenic Intergenic -1332 ENSMUSG00000089393.1 ENSMUSG00000089393 ENSMUST00000158768 Gm23022 snRNA Interval_109937 chr3 152016774 152016964 + 0 NA Intergenic Intergenic 28415 ENSMUSG00000104659.1 ENSMUSG00000104659 ENSMUST00000197267 Gm43619 lincRNA Interval_3707 chr1 61417766 61420308 + 0 NA Intergenic Intergenic -21064 ENSMUSG00000086408.1 ENSMUSG00000086408 ENSMUST00000141758 Gm11588 lincRNA Interval_52294 chr14 44009419 44010002 + 0 NA Intergenic Intergenic -7442 ENSMUSG00000072598.3 ENSMUSG00000072598 ENSMUST00000160223 Ang6 protein_coding Interval_26799 chr11 60557074 60557557 + 0 NA exon (ENSMUSG00000042650.3, exon 4 of 4) protein_coding-exon (ENSMUSG00000042650.3, exon 4 of 4) 3990 ENSMUSG00000096745.1 ENSMUSG00000096745 ENSMUST00000177975 Gm12622 processed_pseudogene Interval_9089 chr1 153508989 153510919 + 0 NA intron (ENSMUSG00000042684.8, intron 10 of 11) protein_coding-intron (ENSMUSG00000042684.8, intron 10 of 11) -31815 ENSMUSG00000042699.11 ENSMUSG00000042699 ENSMUST00000189425 Dhx9 protein_coding Interval_144991 chr7 29303546 29305740 + 0 NA intron (ENSMUSG00000030584.14, intron 1 of 11) protein_coding-intron (ENSMUSG00000030584.14, intron 1 of 11) -10420 ENSMUSG00000030584.14 ENSMUSG00000030584 ENSMUST00000207677 Dpf1 protein_coding Interval_81750 chr18 64384573 64385406 + 0 NA intron (ENSMUSG00000045991.19, intron 1 of 1) protein_coding-intron (ENSMUSG00000045991.19, intron 1 of 1) 43680 ENSMUSG00000118375.1 ENSMUSG00000118375 ENSMUST00000237830 Gm36804 processed_pseudogene Interval_135355 chr6 38575472 38577611 + 0 NA intron (ENSMUSG00000029823.16, intron 6 of 12) protein_coding-intron (ENSMUSG00000029823.16, intron 2 of 9) 25207 ENSMUSG00000029823.16 ENSMUSG00000029823 ENSMUST00000160430 Luc7l2 protein_coding Interval_82054 chr18 67390121 67391760 + 0 NA intron (ENSMUSG00000001473.7, intron 1 of 3) protein_coding-intron (ENSMUSG00000001473.7, intron 1 of 3) -1327 ENSMUSG00000001473.7 ENSMUSG00000001473 ENSMUST00000236667 Tubb6 protein_coding Interval_46911 chr13 73345307 73348477 + 0 NA exon (ENSMUSG00000113346.2, exon 2 of 3) lincRNA-exon (ENSMUSG00000113346.2, exon 2 of 3) 492 ENSMUSG00000113346.2 ENSMUSG00000113346 ENSMUST00000223470 Eprn lincRNA Interval_125228 chr5 65534409 65534764 + 0 NA exon (ENSMUSG00000105601.1, exon 1 of 1) TEC-exon (ENSMUSG00000105601.1, exon 1 of 1) 1174 ENSMUSG00000105601.1 ENSMUSG00000105601 ENSMUST00000199296 Gm42725 TEC Interval_67169 chr16 44125560 44126508 + 0 NA intron (ENSMUSG00000052459.13, intron 1 of 3) protein_coding-intron (ENSMUSG00000052459.13, intron 1 of 14) 13671 ENSMUSG00000052459.13 ENSMUSG00000052459 ENSMUST00000147025 Atp6v1a protein_coding Interval_74716 chr17 56126156 56126344 + 0 NA exon (ENSMUSG00000001227.12, exon 14 of 17) protein_coding-exon (ENSMUSG00000001227.12, exon 14 of 17) -4249 ENSMUSG00000037095.8 ENSMUSG00000037095 ENSMUST00000041357 Lrg1 protein_coding Interval_72146 chr17 28269380 28271001 + 0 NA intron (ENSMUSG00000002250.16, intron 2 of 6) protein_coding-intron (ENSMUSG00000002250.16, intron 2 of 7) 37416 ENSMUSG00000002250.16 ENSMUSG00000002250 ENSMUST00000233383 Ppard protein_coding Interval_57185 chr15 7204806 7205757 + 0 NA TTS (ENSMUSG00000042961.13) protein_coding-TTS (ENSMUSG00000042961.13) 49487 ENSMUSG00000042961.13 ENSMUSG00000042961 ENSMUST00000159726 Egflam protein_coding Interval_145333 chr7 33891982 33892161 + 0 NA Intergenic Intergenic 12046 ENSMUSG00000101203.1 ENSMUSG00000101203 ENSMUST00000187527 Gm28615 unprocessed_pseudogene Interval_55178 chr14 79049535 79049803 + 0 NA intron (ENSMUSG00000058997.8, intron 21 of 25) protein_coding-intron (ENSMUSG00000058997.8, intron 21 of 44) -56040 ENSMUSG00000115643.1 ENSMUSG00000115643 ENSMUST00000227294 Gm49011 processed_pseudogene Interval_96526 chr2 125290437 125290733 + 0 NA Intergenic Intergenic -6607 ENSMUSG00000087682.1 ENSMUSG00000087682 ENSMUST00000130919 Gm14003 lincRNA Interval_61068 chr15 79042627 79043485 + 0 NA TTS (ENSMUSG00000116378.1) protein_coding-TTS (ENSMUSG00000116378.1) 1171 ENSMUSG00000114755.1 ENSMUSG00000114755 ENSMUST00000058004 Galr3 protein_coding Interval_46699 chr13 69481632 69482404 + 0 NA Intergenic Intergenic -31982 ENSMUSG00000113486.1 ENSMUSG00000113486 ENSMUST00000221578 Gm48676 processed_pseudogene Interval_139663 chr6 106341087 106341951 + 0 NA intron (ENSMUSG00000064293.14, intron 3 of 3) protein_coding-intron (ENSMUSG00000064293.14, intron 2 of 15) -313984 ENSMUSG00000064293.14 ENSMUSG00000064293 ENSMUST00000142626 Cntn4 protein_coding Interval_67593 chr16 51807759 51808363 + 0 NA Intergenic Intergenic 179226 ENSMUSG00000116725.1 ENSMUSG00000116725 ENSMUST00000232050 Gm29686 processed_transcript Interval_73732 chr17 43054636 43055034 + 0 NA intron (ENSMUSG00000023915.5, intron 3 of 5) protein_coding-intron (ENSMUSG00000023915.5, intron 3 of 5) 38267 ENSMUSG00000023915.5 ENSMUSG00000023915 ENSMUST00000233482 Tnfrsf21 protein_coding Interval_73648 chr17 42315551 42317072 + 0 NA promoter-TSS (ENSMUSG00000042256.5) protein_coding-promoter-TSS (ENSMUSG00000042256.5) 322 ENSMUSG00000042256.5 ENSMUSG00000042256 ENSMUST00000232968 Ptchd4 protein_coding Interval_61730 chr15 83631152 83631769 + 0 NA intron (ENSMUSG00000016763.15, intron 8 of 21) protein_coding-intron (ENSMUSG00000016763.15, intron 9 of 22) -17721 ENSMUSG00000016763.15 ENSMUSG00000016763 ENSMUST00000229057 Scube1 protein_coding Interval_9850 chr1 163122400 163122708 + 0 NA Intergenic Intergenic 4327 ENSMUSG00000089174.1 ENSMUSG00000089174 ENSMUST00000158549 Gm22434 snoRNA Interval_33963 chr11 119692101 119693038 + 0 NA intron (ENSMUSG00000025583.15, intron 3 of 32) protein_coding-intron (ENSMUSG00000025583.15, intron 3 of 33) -45939 ENSMUSG00000083870.1 ENSMUSG00000083870 ENSMUST00000121392 Gm11761 processed_pseudogene Interval_44757 chr13 48296887 48297812 + 0 NA Intergenic Intergenic -15321 ENSMUSG00000114881.1 ENSMUSG00000114881 ENSMUST00000225756 Gm8588 processed_pseudogene Interval_160284 chr8 107685131 107685593 + 0 NA Intergenic Intergenic 5482 ENSMUSG00000110508.1 ENSMUSG00000110508 ENSMUST00000212585 Gm8940 processed_pseudogene Interval_44597 chr13 46616810 46617004 + 0 NA intron (ENSMUSG00000021373.16, intron 6 of 11) protein_coding-intron (ENSMUSG00000021373.16, intron 7 of 12) 2873 ENSMUSG00000114596.1 ENSMUSG00000114596 ENSMUST00000225040 Gm47523 antisense Interval_115457 chr4 99115950 99116583 + 0 NA promoter-TSS (ENSMUSG00000087395.1) antisense-promoter-TSS (ENSMUSG00000087395.1) -148 ENSMUSG00000087395.1 ENSMUSG00000087395 ENSMUST00000129460 Gm12705 antisense Interval_90572 chr2 31206306 31207094 + 0 NA promoter-TSS (ENSMUSG00000000194.13) protein_coding-promoter-TSS (ENSMUSG00000000194.13) 4647 ENSMUSG00000087430.1 ENSMUSG00000087430 ENSMUST00000146769 Gm13405 antisense Interval_155369 chr8 32667242 32668368 + 0 NA intron (ENSMUSG00000062991.9, intron 1 of 12) protein_coding-intron (ENSMUSG00000062991.9, intron 1 of 8) 274677 ENSMUSG00000079070.10 ENSMUSG00000079070 ENSMUST00000180220 Gm3985 lincRNA Interval_144936 chr7 29008472 29009403 + 0 NA intron (ENSMUSG00000030592.18, intron 103 of 108) protein_coding-intron (ENSMUSG00000030592.18, intron 100 of 105) 7395 ENSMUSG00000037337.11 ENSMUSG00000037337 ENSMUST00000208784 Map4k1 protein_coding Interval_33717 chr11 118071057 118071343 + 0 NA intron (ENSMUSG00000033987.16, intron 48 of 80) protein_coding-intron (ENSMUSG00000033987.16, intron 48 of 80) 17994 ENSMUSG00000033987.16 ENSMUSG00000033987 ENSMUST00000018719 Dnah17 protein_coding Interval_101088 chr2 177843173 177844607 + 0 NA Intergenic Intergenic -9244 ENSMUSG00000095362.7 ENSMUSG00000095362 ENSMUST00000150650 Gm14325 protein_coding Interval_59110 chr15 44086786 44087365 + 0 NA Intergenic Intergenic -109892 ENSMUSG00000038760.14 ENSMUSG00000038760 ENSMUST00000227505 Trhr protein_coding Interval_82700 chr18 76051564 76052305 + 0 NA intron (ENSMUSG00000044646.15, intron 3 of 5) protein_coding-intron (ENSMUSG00000044646.15, intron 3 of 4) -36257 ENSMUSG00000118311.1 ENSMUSG00000118311 ENSMUST00000238127 1700003O11Rik antisense Interval_51321 chr14 26389875 26390923 + 0 NA intron (ENSMUSG00000090104.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000021874.12, intron 4 of 7) 1200 ENSMUSG00000090104.1 ENSMUSG00000090104 ENSMUST00000160089 Slmapos2 lincRNA Interval_91011 chr2 34230245 34230485 + 0 NA intron (ENSMUSG00000038718.15, intron 1 of 5) protein_coding-intron (ENSMUSG00000038718.15, intron 2 of 8) -57406 ENSMUSG00000084908.2 ENSMUSG00000084908 ENSMUST00000131588 C79798 antisense Interval_161525 chr8 120965736 120966146 + 0 NA intron (ENSMUSG00000092329.1, intron 1 of 15) protein_coding-intron (ENSMUSG00000092329.1, intron 1 of 15) -36986 ENSMUSG00000101886.1 ENSMUSG00000101886 ENSMUST00000187913 Gm28324 lincRNA Interval_168106 chr9 76595731 76596351 + 0 NA Intergenic Intergenic -28925 ENSMUSG00000032358.12 ENSMUSG00000032358 ENSMUST00000098546 Fam83b protein_coding Interval_61564 chr15 82417077 82417918 + 0 NA Intergenic Intergenic 5950 ENSMUSG00000116419.1 ENSMUSG00000116419 ENSMUST00000229517 Gm19267 unprocessed_pseudogene Interval_10098 chr1 165775486 165775996 + 0 NA TTS (ENSMUSG00000040713.12) protein_coding-TTS (ENSMUSG00000040713.12) 1414 ENSMUSG00000104306.1 ENSMUSG00000104306 ENSMUST00000194000 Gm36972 lincRNA Interval_74984 chr17 58947591 58948752 + 0 NA intron (ENSMUSG00000024227.14, intron 6 of 12) protein_coding-intron (ENSMUSG00000024227.14, intron 6 of 12) -54676 ENSMUSG00000024227.14 ENSMUSG00000024227 ENSMUST00000177360 Pdzph1 protein_coding Interval_76994 chr17 85454205 85454973 + 0 NA intron (ENSMUSG00000071037.6, intron 10 of 10) protein_coding-intron (ENSMUSG00000071037.6, intron 10 of 10) -44044 ENSMUSG00000097803.1 ENSMUSG00000097803 ENSMUST00000181130 Rpl31-ps16 processed_pseudogene Interval_127229 chr5 101690746 101690984 + 0 NA Intergenic Intergenic -12721 ENSMUSG00000106164.1 ENSMUSG00000106164 ENSMUST00000198824 9430085M18Rik lincRNA Interval_87761 chr19 55706393 55707291 + 0 NA Intergenic Intergenic -35422 ENSMUSG00000024985.20 ENSMUSG00000024985 ENSMUST00000148666 Tcf7l2 protein_coding Interval_80223 chr18 38373751 38375113 + 0 NA Intergenic Intergenic -13894 ENSMUSG00000118140.1 ENSMUSG00000118140 ENSMUST00000235767 Gm4949 processed_pseudogene Interval_22659 chr11 12610316 12610538 + 0 NA Intergenic Intergenic -66506 ENSMUSG00000089034.1 ENSMUSG00000089034 ENSMUST00000158409 Gm22156 snoRNA Interval_170125 chr9 105077723 105078019 + 0 NA TTS (ENSMUSG00000032563.16) protein_coding-TTS (ENSMUSG00000032563.16) -8049 ENSMUSG00000111472.1 ENSMUSG00000111472 ENSMUST00000213426 Gm47103 processed_pseudogene Interval_15659 chr10 53234147 53234579 + 0 NA promoter-TSS (ENSMUSG00000112835.1) lincRNA-promoter-TSS (ENSMUSG00000112835.1) -824 ENSMUSG00000112835.1 ENSMUSG00000112835 ENSMUST00000219101 Gm36173 lincRNA Interval_46168 chr13 62149367 62151174 + 0 NA promoter-TSS (ENSMUSG00000113690.1) processed_pseudogene-promoter-TSS (ENSMUSG00000113690.1) -900 ENSMUSG00000113690.1 ENSMUSG00000113690 ENSMUST00000221857 Gm36501 processed_pseudogene Interval_91161 chr2 35587904 35589669 + 0 NA intron (ENSMUSG00000026883.17, intron 1 of 16) protein_coding-intron (ENSMUSG00000026883.17, intron 1 of 16) -30301 ENSMUSG00000086555.2 ENSMUSG00000086555 ENSMUST00000134679 Gm13446 processed_transcript Interval_33870 chr11 119102430 119102715 + 0 NA Intergenic Intergenic 8853 ENSMUSG00000086306.1 ENSMUSG00000086306 ENSMUST00000156576 Gm11754 lincRNA Interval_56985 chr15 3204104 3204444 + 0 NA Intergenic Intergenic 15424 ENSMUSG00000114999.1 ENSMUSG00000114999 ENSMUST00000227053 Gm7962 processed_pseudogene Interval_133855 chr6 13556410 13556850 + 0 NA Intergenic Intergenic 7124 ENSMUSG00000095489.1 ENSMUSG00000095489 ENSMUST00000179274 Gm25737 snRNA Interval_167754 chr9 72543222 72544275 + 0 NA intron (ENSMUSG00000037674.15, intron 2 of 5) protein_coding-intron (ENSMUSG00000037674.15, intron 1 of 8) -7980 ENSMUSG00000099310.1 ENSMUSG00000099310 ENSMUST00000183619 Gm19427 processed_pseudogene Interval_164934 chr9 43209969 43211387 + 0 NA promoter-TSS (ENSMUSG00000032015.16) protein_coding-promoter-TSS (ENSMUSG00000032015.16) -6444 ENSMUSG00000111864.1 ENSMUSG00000111864 ENSMUST00000216693 Rpl26-ps6 processed_pseudogene Interval_96559 chr2 125704755 125705611 + 0 NA intron (ENSMUSG00000035109.14, intron 1 of 1) protein_coding-intron (ENSMUSG00000035109.14, intron 1 of 11) 18965 ENSMUSG00000035109.14 ENSMUSG00000035109 ENSMUST00000157002 Shc4 protein_coding Interval_123940 chr5 36762872 36764116 + 0 NA intron (ENSMUSG00000115557.1, intron 1 of 1) unitary_pseudogene-intron (ENSMUSG00000115557.1, intron 1 of 1) 3201 ENSMUSG00000115557.1 ENSMUSG00000115557 ENSMUST00000227994 Gm40318 unitary_pseudogene Interval_136525 chr6 55161791 55162384 + 0 NA intron (ENSMUSG00000108285.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000108285.1, intron 1 of 2) 7628 ENSMUSG00000108285.1 ENSMUSG00000108285 ENSMUST00000204585 Gm34358 lincRNA Interval_62700 chr15 96351089 96351483 + 0 NA intron (ENSMUSG00000033237.19, intron 4 of 20) protein_coding-intron (ENSMUSG00000033237.19, intron 4 of 20) -27528 ENSMUSG00000033237.19 ENSMUSG00000033237 ENSMUST00000176739 Arid2 protein_coding Interval_49236 chr13 109703644 109703943 + 0 NA intron (ENSMUSG00000021699.17, intron 1 of 4) protein_coding-intron (ENSMUSG00000021699.17, intron 1 of 14) -200016 ENSMUSG00000084651.1 ENSMUSG00000084651 ENSMUST00000122702 Mir1904 miRNA Interval_59439 chr15 53176558 53177503 + 0 NA intron (ENSMUSG00000061731.9, intron 1 of 10) protein_coding-intron (ENSMUSG00000061731.9, intron 1 of 10) -69162 ENSMUSG00000061731.9 ENSMUSG00000061731 ENSMUST00000140798 Ext1 protein_coding Interval_117303 chr4 122858126 122858779 + 0 NA TTS (ENSMUSG00000028656.14) protein_coding-TTS (ENSMUSG00000028656.14) 22206 ENSMUSG00000028657.14 ENSMUSG00000028657 ENSMUST00000097902 Ppt1 protein_coding Interval_135597 chr6 41172094 41172632 + 0 NA Intergenic Intergenic -2952 ENSMUSG00000102409.1 ENSMUSG00000102409 ENSMUST00000194256 Trbv18 TR_V_pseudogene Interval_110160 chr3 153883882 153884446 + 0 NA intron (ENSMUSG00000005493.15, intron 8 of 20) protein_coding-intron (ENSMUSG00000005493.15, intron 7 of 19) -3921 ENSMUSG00000005493.15 ENSMUSG00000005493 ENSMUST00000190449 Msh4 protein_coding Interval_49010 chr13 106894087 106895235 + 0 NA intron (ENSMUSG00000042590.17, intron 8 of 29) protein_coding-intron (ENSMUSG00000042590.17, intron 9 of 29) 42761 ENSMUSG00000100833.1 ENSMUSG00000100833 ENSMUST00000191363 Gm28988 antisense Interval_17370 chr10 76117561 76119276 + 0 NA Intergenic Intergenic -7457 ENSMUSG00000020226.9 ENSMUSG00000020226 ENSMUST00000120757 Slc5a4b protein_coding Interval_112788 chr4 45000590 45001153 + 0 NA intron (ENSMUSG00000049657.9, intron 1 of 1) protein_coding-intron (ENSMUSG00000049657.9, intron 1 of 1) -10816 ENSMUSG00000070997.4 ENSMUSG00000070997 ENSMUST00000095105 1700055D18Rik antisense Interval_16102 chr10 60746631 60747301 + 0 NA intron (ENSMUSG00000020100.15, intron 2 of 5) protein_coding-intron (ENSMUSG00000020100.15, intron 2 of 5) 5817 ENSMUSG00000020100.15 ENSMUSG00000020100 ENSMUST00000144989 Slc29a3 protein_coding Interval_5840 chr1 92397624 92397983 + 0 NA Intergenic Intergenic 32729 ENSMUSG00000101522.1 ENSMUSG00000101522 ENSMUST00000190873 Gm7837 processed_pseudogene Interval_24513 chr11 33917350 33917960 + 0 NA intron (ENSMUSG00000053519.17, intron 1 of 7) protein_coding-intron (ENSMUSG00000053519.17, intron 1 of 3) -45358 ENSMUSG00000020155.2 ENSMUSG00000020155 ENSMUST00000020362 Kcnmb1 protein_coding Interval_131554 chr5 138106825 138107589 + 0 NA TTS (ENSMUSG00000106102.1) processed_pseudogene-TTS (ENSMUSG00000106102.1) 300 ENSMUSG00000106102.1 ENSMUSG00000106102 ENSMUST00000199837 Gm43493 processed_pseudogene Interval_85916 chr19 33068842 33069052 + 0 NA Intergenic Intergenic -1125 ENSMUSG00000117914.1 ENSMUSG00000117914 ENSMUST00000236508 Gm29863 lincRNA Interval_25390 chr11 47275656 47276282 + 0 NA intron (ENSMUSG00000020354.15, intron 2 of 6) protein_coding-intron (ENSMUSG00000020354.15, intron 2 of 7) -265463 ENSMUSG00000082792.1 ENSMUSG00000082792 ENSMUST00000121420 Gm12176 processed_pseudogene Interval_93131 chr2 70471811 70473113 + 0 NA Intergenic Intergenic -2461 ENSMUSG00000075304.2 ENSMUSG00000075304 ENSMUST00000100043 Sp5 protein_coding Interval_78539 chr18 14591726 14593038 + 0 NA Intergenic Intergenic 22235 ENSMUSG00000053740.8 ENSMUSG00000053740 ENSMUST00000066378 Gm6457 processed_pseudogene Interval_138472 chr6 88493619 88493877 + 0 NA intron (ENSMUSG00000030079.15, intron 9 of 10) protein_coding-intron (ENSMUSG00000030079.15, intron 9 of 10) -9857 ENSMUSG00000107659.1 ENSMUSG00000107659 ENSMUST00000203181 Gm44170 antisense Interval_120073 chr4 141658466 141658911 + 0 NA intron (ENSMUSG00000028917.14, intron 1 of 19) protein_coding-intron (ENSMUSG00000028917.14, intron 2 of 19) 26911 ENSMUSG00000040715.12 ENSMUSG00000040715 ENSMUST00000105782 Rsc1a1 protein_coding Interval_19469 chr10 99708774 99709553 + 0 NA Intergenic Intergenic -9980 ENSMUSG00000113032.1 ENSMUSG00000113032 ENSMUST00000222959 Gm47578 antisense Interval_40074 chr12 101010342 101010562 + 0 NA intron (ENSMUSG00000113634.1, intron 1 of 1) protein_coding-intron (ENSMUSG00000021182.16, intron 3 of 29) 3465 ENSMUSG00000113634.1 ENSMUSG00000113634 ENSMUST00000223241 Gm36756 antisense Interval_90222 chr2 29105311 29105758 + 0 NA Intergenic Intergenic -11429 ENSMUSG00000082788.1 ENSMUSG00000082788 ENSMUST00000120617 Gm13396 processed_pseudogene Interval_98471 chr2 152654352 152654615 + 0 NA promoter-TSS (ENSMUSG00000087148.1) antisense-promoter-TSS (ENSMUSG00000087148.1) -153 ENSMUSG00000087148.1 ENSMUSG00000087148 ENSMUST00000139912 1700030C14Rik antisense Interval_124919 chr5 60651396 60652283 + 0 NA Intergenic Intergenic -22478 ENSMUSG00000105486.1 ENSMUSG00000105486 ENSMUST00000198806 Gm3372 processed_pseudogene Interval_85739 chr19 30208461 30209415 + 0 NA Intergenic Intergenic -24004 ENSMUSG00000024863.6 ENSMUSG00000024863 ENSMUST00000025797 Mbl2 protein_coding Interval_135383 chr6 38768515 38768823 + 0 NA intron (ENSMUSG00000061436.15, intron 2 of 14) protein_coding-intron (ENSMUSG00000061436.15, intron 1 of 3) 104790 ENSMUSG00000079598.4 ENSMUSG00000079598 ENSMUST00000238216 Clec2l protein_coding Interval_20741 chr10 120673580 120674919 + 0 NA intron (ENSMUSG00000112716.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000112716.1, intron 1 of 2) -7232 ENSMUSG00000103213.1 ENSMUSG00000103213 ENSMUST00000194273 Gm38289 TEC Interval_122089 chr5 16758955 16759323 + 0 NA Intergenic Intergenic -28069 ENSMUSG00000059179.6 ENSMUSG00000059179 ENSMUST00000073014 Gm8991 processed_pseudogene Interval_5285 chr1 87238688 87239601 + 0 NA exon (ENSMUSG00000026254.17, exon 7 of 7) protein_coding-exon (ENSMUSG00000026254.17, exon 7 of 7) -12004 ENSMUSG00000088318.1 ENSMUSG00000088318 ENSMUST00000157693 Gm26187 snRNA Interval_59338 chr15 51771223 51771505 + 0 NA Intergenic Intergenic 64893 ENSMUSG00000022312.11 ENSMUSG00000022312 ENSMUST00000228583 Eif3h protein_coding Interval_174702 chrX 163642846 163643288 + 0 NA Intergenic Intergenic -93390 ENSMUSG00000031364.2 ENSMUSG00000031364 ENSMUST00000033730 Grpr protein_coding Interval_69702 chr16 95674198 95674390 + 0 NA Intergenic Intergenic -28161 ENSMUSG00000022895.16 ENSMUSG00000022895 ENSMUST00000233578 Ets2 protein_coding Interval_172262 chrX 12076885 12081267 + 0 NA intron (ENSMUSG00000040363.15, intron 1 of 13) protein_coding-intron (ENSMUSG00000040363.15, intron 1 of 13) 81270 ENSMUSG00000040363.15 ENSMUSG00000040363 ENSMUST00000209776 Bcor protein_coding Interval_158389 chr8 83320471 83322238 + 0 NA intron (ENSMUSG00000035151.12, intron 1 of 4) protein_coding-intron (ENSMUSG00000035151.12, intron 5 of 8) 11132 ENSMUSG00000035151.12 ENSMUSG00000035151 ENSMUST00000126079 Elmod2 protein_coding Interval_15311 chr10 44427669 44428552 + 0 NA Intergenic Intergenic -3786 ENSMUSG00000111078.1 ENSMUSG00000111078 ENSMUST00000215400 Gm35028 lincRNA Interval_54826 chr14 75540873 75542841 + 0 NA Intergenic Intergenic 51259 ENSMUSG00000034913.10 ENSMUSG00000034913 ENSMUST00000226623 Cby2 protein_coding Interval_39087 chr12 84957675 84957879 + 0 NA intron (ENSMUSG00000042350.13, intron 1 of 2) protein_coding-intron (ENSMUSG00000042350.13, intron 1 of 19) -10854 ENSMUSG00000042350.13 ENSMUSG00000042350 ENSMUST00000168713 Arel1 protein_coding Interval_60667 chr15 76027211 76027480 + 0 NA intron (ENSMUSG00000102018.8, intron 3 of 13) protein_coding-intron (ENSMUSG00000102018.8, intron 2 of 4) -7354 ENSMUSG00000102018.8 ENSMUSG00000102018 ENSMUST00000187060 Iqank1 protein_coding Interval_89568 chr2 22891787 22892165 + 0 NA Intergenic Intergenic -3619 ENSMUSG00000026784.14 ENSMUSG00000026784 ENSMUST00000149229 Pdss1 protein_coding Interval_115681 chr4 102047261 102047545 + 0 NA exon (ENSMUSG00000082264.1, exon 1 of 1) processed_pseudogene-exon (ENSMUSG00000082264.1, exon 1 of 1) 1724 ENSMUSG00000082264.1 ENSMUSG00000082264 ENSMUST00000118151 Gm12799 processed_pseudogene Interval_79736 chr18 34800483 34800858 + 0 NA TTS (ENSMUSG00000038773.11) protein_coding-TTS (ENSMUSG00000038773.11) 3775 ENSMUSG00000038773.11 ENSMUSG00000038773 ENSMUST00000223567 Kdm3b protein_coding Interval_68937 chr16 89410453 89410829 + 0 NA Intergenic Intergenic -6773 ENSMUSG00000058368.3 ENSMUSG00000058368 ENSMUST00000078422 Krtap21-1 protein_coding Interval_36051 chr12 33966543 33969034 + 0 NA Intergenic Intergenic 10117 ENSMUSG00000035799.6 ENSMUSG00000035799 ENSMUST00000049089 Twist1 protein_coding Interval_52953 chr14 52256503 52258446 + 0 NA exon (ENSMUSG00000053754.14, exon 1 of 1) protein_coding-exon (ENSMUSG00000053754.14, exon 1 of 1) -1337 ENSMUSG00000105868.1 ENSMUSG00000105868 ENSMUST00000200590 Gm43766 TEC Interval_169297 chr9 96227717 96228475 + 0 NA intron (ENSMUSG00000032411.15, intron 3 of 9) protein_coding-intron (ENSMUSG00000032411.15, intron 3 of 12) 8966 ENSMUSG00000103611.1 ENSMUSG00000103611 ENSMUST00000192006 Gm37195 TEC Interval_25518 chr11 49479872 49480074 + 0 NA Intergenic Intergenic -9097 ENSMUSG00000059729.2 ENSMUSG00000059729 ENSMUST00000071807 Olfr1385 protein_coding Interval_147839 chr7 74060549 74061022 + 0 NA Intergenic Intergenic -17047 ENSMUSG00000108725.1 ENSMUSG00000108725 ENSMUST00000205302 Gm45004 lincRNA Interval_30444 chr11 94394726 94394949 + 0 NA Intergenic Intergenic -1861 ENSMUSG00000020865.16 ENSMUSG00000020865 ENSMUST00000126566 Abcc3 protein_coding Interval_167164 chr9 65751886 65753292 + 0 NA intron (ENSMUSG00000040524.9, intron 2 of 9) protein_coding-intron (ENSMUSG00000040524.9, intron 2 of 9) 45323 ENSMUSG00000040524.9 ENSMUSG00000040524 ENSMUST00000160747 Zfp609 protein_coding Interval_82954 chr18 79979493 79980834 + 0 NA Intergenic Intergenic 21157 ENSMUSG00000117813.1 ENSMUSG00000117813 ENSMUST00000237811 Gm5823 processed_pseudogene Interval_20299 chr10 116731972 116732213 + 0 NA intron (ENSMUSG00000112924.1, intron 2 of 2) lincRNA-intron (ENSMUSG00000112924.1, intron 2 of 2) 2839 ENSMUSG00000112924.1 ENSMUSG00000112924 ENSMUST00000218193 4930579P08Rik lincRNA Interval_71885 chr17 26735680 26735937 + 0 NA intron (ENSMUSG00000048249.14, intron 1 of 3) protein_coding-intron (ENSMUSG00000048249.14, intron 1 of 8) -21894 ENSMUSG00000048249.14 ENSMUSG00000048249 ENSMUST00000176845 Crebrf protein_coding Interval_26960 chr11 61865521 61866562 + 0 NA exon (ENSMUSG00000072847.4, exon 2 of 2) lincRNA-exon (ENSMUSG00000072847.4, exon 2 of 2) 566 ENSMUSG00000098196.1 ENSMUSG00000098196 ENSMUST00000182516 Gm26964 lincRNA Interval_95680 chr2 114059881 114060515 + 0 NA intron (ENSMUSG00000092397.7, intron 2 of 2) processed_transcript-intron (ENSMUSG00000092201.7, intron 5 of 7) 4951 ENSMUSG00000092397.7 ENSMUSG00000092397 ENSMUST00000155185 C130080G10Rik antisense Interval_142924 chr6 147002293 147003194 + 0 NA TTS (ENSMUSG00000016487.15) protein_coding-TTS (ENSMUSG00000016487.15) -8719 ENSMUSG00000107969.1 ENSMUSG00000107969 ENSMUST00000205056 Gm44085 antisense Interval_123607 chr5 33743611 33744137 + 0 NA intron (ENSMUSG00000005299.6, intron 5 of 6) protein_coding-intron (ENSMUSG00000005299.6, intron 12 of 13) 10622 ENSMUSG00000054252.18 ENSMUSG00000054252 ENSMUST00000142860 Fgfr3 protein_coding Interval_14558 chr10 35521241 35522520 + 0 NA Intergenic Intergenic -36484 ENSMUSG00000111753.1 ENSMUSG00000111753 ENSMUST00000214107 1700054O05Rik lincRNA Interval_25055 chr11 43545738 43547464 + 0 NA intron (ENSMUSG00000044707.7, intron 1 of 1) protein_coding-intron (ENSMUSG00000044707.7, intron 2 of 5) 17355 ENSMUSG00000044707.7 ENSMUSG00000044707 ENSMUST00000152153 Ccnjl protein_coding Interval_155182 chr8 27242842 27243544 + 0 NA intron (ENSMUSG00000031489.15, intron 2 of 3) protein_coding-intron (ENSMUSG00000031489.15, intron 2 of 3) 7423 ENSMUSG00000031489.15 ENSMUSG00000031489 ENSMUST00000209447 Adrb3 protein_coding Interval_32260 chr11 106573149 106574188 + 0 NA intron (ENSMUSG00000040548.16, intron 1 of 1) protein_coding-intron (ENSMUSG00000040548.16, intron 1 of 11) -6558 ENSMUSG00000040548.16 ENSMUSG00000040548 ENSMUST00000153870 Tex2 protein_coding Interval_123881 chr5 36245969 36247797 + 0 NA intron (ENSMUSG00000029093.14, intron 1 of 7) protein_coding-intron (ENSMUSG00000029093.14, intron 1 of 26) 42862 ENSMUSG00000043430.5 ENSMUSG00000043430 ENSMUST00000052224 Psapl1 protein_coding Interval_93731 chr2 76285220 76285412 + 0 NA intron (ENSMUSG00000075270.11, intron 2 of 19) protein_coding-intron (ENSMUSG00000075270.11, intron 2 of 19) -33166 ENSMUSG00000105164.1 ENSMUSG00000105164 ENSMUST00000196553 Gm44337 miRNA Interval_164416 chr9 36866476 36866767 + 0 NA intron (ENSMUSG00000032118.16, intron 3 of 3) protein_coding-intron (ENSMUSG00000032118.16, intron 5 of 9) 33813 ENSMUSG00000032118.16 ENSMUSG00000032118 ENSMUST00000161978 Fez1 protein_coding Interval_138452 chr6 88320615 88320882 + 0 NA intron (ENSMUSG00000033216.9, intron 4 of 7) protein_coding-intron (ENSMUSG00000033216.9, intron 4 of 6) 32858 ENSMUSG00000107472.1 ENSMUSG00000107472 ENSMUST00000203631 Gm44265 sense_intronic Interval_155831 chr8 39871340 39871534 + 0 NA Intergenic Intergenic -145277 ENSMUSG00000109815.1 ENSMUSG00000109815 ENSMUST00000209880 Gm7082 processed_pseudogene Interval_108021 chr3 120037949 120038399 + 0 NA Intergenic Intergenic 69443 ENSMUSG00000104726.1 ENSMUSG00000104726 ENSMUST00000195974 Gm18384 processed_pseudogene Interval_133408 chr6 4769640 4770475 + 0 NA promoter-TSS (ENSMUSG00000107977.1) TEC-promoter-TSS (ENSMUSG00000107977.1) -843 ENSMUSG00000107977.1 ENSMUSG00000107977 ENSMUST00000205169 Gm44121 TEC Interval_42406 chr13 13310481 13310806 + 0 NA Intergenic Intergenic -12301 ENSMUSG00000096198.1 ENSMUSG00000096198 ENSMUST00000157363 Gm26133 snRNA Interval_43169 chr13 24824106 24825010 + 0 NA intron (ENSMUSG00000006717.7, intron 1 of 1) protein_coding-intron (ENSMUSG00000006717.7, intron 1 of 2) 6982 ENSMUSG00000006717.7 ENSMUSG00000006717 ENSMUST00000224839 Acot13 protein_coding Interval_6410 chr1 107369222 107369416 + 0 NA intron (ENSMUSG00000026327.8, intron 2 of 5) protein_coding-intron (ENSMUSG00000026327.8, intron 1 of 7) 8121 ENSMUSG00000026327.8 ENSMUSG00000026327 ENSMUST00000027566 Serpinb11 protein_coding Interval_171144 chr9 114747144 114747824 + 0 NA exon (ENSMUSG00000032434.9, exon 4 of 4) protein_coding-exon (ENSMUSG00000032434.9, exon 4 of 4) 16368 ENSMUSG00000032434.9 ENSMUSG00000032434 ENSMUST00000035007 Cmtm6 protein_coding Interval_158958 chr8 88243552 88244735 + 0 NA intron (ENSMUSG00000036779.12, intron 3 of 12) protein_coding-intron (ENSMUSG00000036779.12, intron 3 of 11) -7829 ENSMUSG00000036779.12 ENSMUSG00000036779 ENSMUST00000154115 Tent4b protein_coding Interval_80683 chr18 46290156 46290487 + 0 NA TTS (ENSMUSG00000071855.5) protein_coding-TTS (ENSMUSG00000071855.5) 529 ENSMUSG00000071855.5 ENSMUSG00000071855 ENSMUST00000237152 Ccdc112 protein_coding Interval_30292 chr11 93088641 93089233 + 0 NA Intergenic Intergenic -9091 ENSMUSG00000056158.14 ENSMUSG00000056158 ENSMUST00000107863 Car10 protein_coding Interval_33474 chr11 116724942 116725939 + 0 NA Intergenic Intergenic 24393 ENSMUSG00000078586.3 ENSMUSG00000078586 ENSMUST00000106377 Gm11735 unprocessed_pseudogene Interval_136498 chr6 54952595 54954220 + 0 NA intron (ENSMUSG00000038058.14, intron 1 of 11) protein_coding-intron (ENSMUSG00000038058.14, intron 1 of 11) -13556 ENSMUSG00000038058.14 ENSMUSG00000038058 ENSMUST00000203837 Nod1 protein_coding Interval_79761 chr18 34978218 34978579 + 0 NA Intergenic Intergenic -4572 ENSMUSG00000118380.1 ENSMUSG00000118380 ENSMUST00000238090 Gm36037 processed_transcript Interval_110153 chr3 153817946 153818173 + 0 NA Intergenic Intergenic -13111 ENSMUSG00000077174.1 ENSMUSG00000077174 ENSMUST00000103986 Gm25757 snoRNA Interval_43231 chr13 26119130 26119561 + 0 NA Intergenic Intergenic -75356 ENSMUSG00000084358.1 ENSMUSG00000084358 ENSMUST00000119264 Gm11352 processed_pseudogene Interval_84672 chr19 14889119 14891285 + 0 NA Intergenic Intergenic 70564 ENSMUSG00000063586.1 ENSMUSG00000063586 ENSMUST00000072982 Gm5513 processed_pseudogene Interval_89517 chr2 21496936 21497152 + 0 NA intron (ENSMUSG00000045967.11, intron 2 of 7) protein_coding-intron (ENSMUSG00000045967.11, intron 2 of 10) -53515 ENSMUSG00000080846.1 ENSMUSG00000080846 ENSMUST00000118053 Gm13379 processed_pseudogene Interval_153418 chr7 144578970 144579302 + 0 NA exon (ENSMUSG00000031077.7, exon 2 of 2) protein_coding-exon (ENSMUSG00000031077.7, exon 2 of 2) 3327 ENSMUSG00000031077.7 ENSMUSG00000031077 ENSMUST00000033394 Fadd protein_coding Interval_104713 chr3 69658419 69658659 + 0 NA Intergenic Intergenic -3227 ENSMUSG00000102342.1 ENSMUSG00000102342 ENSMUST00000193752 Gm37380 processed_pseudogene Interval_110240 chr3 154691710 154692943 + 0 NA intron (ENSMUSG00000078161.8, intron 1 of 13) protein_coding-intron (ENSMUSG00000078161.8, intron 1 of 13) 19017 ENSMUSG00000092522.1 ENSMUSG00000092522 ENSMUST00000174217 Gm20389 antisense Interval_136181 chr6 51811466 51811745 + 0 NA Intergenic Intergenic 60324 ENSMUSG00000059182.7 ENSMUSG00000059182 ENSMUST00000203313 Skap2 protein_coding Interval_67743 chr16 56764476 56765122 + 0 NA intron (ENSMUSG00000022755.4, intron 6 of 15) protein_coding-intron (ENSMUSG00000022755.4, intron 6 of 15) 6534 ENSMUSG00000082485.1 ENSMUSG00000082485 ENSMUST00000120470 Gm15693 processed_pseudogene Interval_94690 chr2 93404128 93404343 + 0 NA intron (ENSMUSG00000085852.1, intron 2 of 5) antisense-intron (ENSMUSG00000085852.1, intron 2 of 5) 688 ENSMUSG00000085852.1 ENSMUSG00000085852 ENSMUST00000137073 Gm13807 antisense Interval_134298 chr6 24655944 24656315 + 0 NA intron (ENSMUSG00000029684.14, intron 1 of 1) protein_coding-intron (ENSMUSG00000029684.14, intron 1 of 10) 4240 ENSMUSG00000106946.1 ENSMUSG00000106946 ENSMUST00000200848 Gm42856 TEC Interval_58614 chr15 36589110 36590186 + 0 NA Intergenic Intergenic 6104 ENSMUSG00000105494.1 ENSMUSG00000105494 ENSMUST00000175424 Gm44310 miRNA Interval_56028 chr14 104814155 104814496 + 0 NA intron (ENSMUSG00000115432.1, intron 3 of 4) lincRNA-intron (ENSMUSG00000115432.1, intron 2 of 4) -157102 ENSMUSG00000077425.1 ENSMUSG00000077425 ENSMUST00000104237 Gm24280 snoRNA Interval_167078 chr9 65108978 65110129 + 0 NA intron (ENSMUSG00000032816.15, intron 1 of 3) protein_coding-intron (ENSMUSG00000032816.15, intron 1 of 19) 8058 ENSMUSG00000032816.15 ENSMUSG00000032816 ENSMUST00000166273 Igdcc4 protein_coding Interval_33341 chr11 116023685 116024834 + 0 NA exon (ENSMUSG00000016559.14, exon 1 of 3) protein_coding-exon (ENSMUSG00000016559.14, exon 1 of 3) 255 ENSMUSG00000016559.14 ENSMUSG00000016559 ENSMUST00000139378 H3f3b protein_coding Interval_74542 chr17 53182744 53183674 + 0 NA Intergenic Intergenic -13242 ENSMUSG00000117244.1 ENSMUSG00000117244 ENSMUST00000233156 Gm9210 processed_pseudogene Interval_67739 chr16 56716603 56718146 + 0 NA promoter-TSS (ENSMUSG00000022757.19) protein_coding-promoter-TSS (ENSMUSG00000022757.19) -192 ENSMUSG00000022757.19 ENSMUSG00000022757 ENSMUST00000141404 Tfg protein_coding Interval_83832 chr19 4966340 4966573 + 0 NA exon (ENSMUSG00000024902.5, exon 5 of 5) protein_coding-exon (ENSMUSG00000024902.5, exon 5 of 5) 4126 ENSMUSG00000024902.5 ENSMUSG00000024902 ENSMUST00000235229 Mrpl11 protein_coding Interval_104738 chr3 69950280 69950733 + 0 NA Intergenic Intergenic 5176 ENSMUSG00000103549.1 ENSMUSG00000103549 ENSMUST00000194028 Gm17895 processed_pseudogene Interval_102438 chr3 26113406 26113771 + 0 NA intron (ENSMUSG00000063887.13, intron 3 of 7) protein_coding-intron (ENSMUSG00000063887.13, intron 1 of 5) -218363 ENSMUSG00000074664.3 ENSMUSG00000074664 ENSMUST00000195446 A830092H15Rik antisense Interval_65159 chr16 20256875 20258539 + 0 NA Intergenic Intergenic -16349 ENSMUSG00000041205.8 ENSMUSG00000041205 ENSMUST00000040880 Map6d1 protein_coding Interval_127018 chr5 99633823 99634312 + 0 NA intron (ENSMUSG00000089809.9, intron 1 of 2) protein_coding-intron (ENSMUSG00000089809.9, intron 1 of 1) 8231 ENSMUSG00000090146.1 ENSMUSG00000090146 ENSMUST00000159244 4930405H06Rik antisense Interval_119125 chr4 135708753 135709678 + 0 NA Intergenic Intergenic 7383 ENSMUSG00000083678.3 ENSMUSG00000083678 ENSMUST00000122331 Gm12989 processed_pseudogene Interval_152497 chr7 133571053 133572161 + 0 NA Intergenic Intergenic 30551 ENSMUSG00000030976.3 ENSMUSG00000030976 ENSMUST00000033275 Tex36 protein_coding Interval_86151 chr19 37084642 37084847 + 0 NA intron (ENSMUSG00000039652.16, intron 7 of 10) protein_coding-intron (ENSMUSG00000039652.16, intron 7 of 10) 64418 ENSMUSG00000080544.1 ENSMUSG00000080544 ENSMUST00000116894 Gm22714 ribozyme Interval_149187 chr7 96136053 96137399 + 0 NA Intergenic Intergenic 66810 ENSMUSG00000108528.1 ENSMUSG00000108528 ENSMUST00000205708 Gm8319 processed_pseudogene Interval_96944 chr2 129773256 129773973 + 0 NA Intergenic Intergenic 23713 ENSMUSG00000084328.1 ENSMUSG00000084328 ENSMUST00000119389 Gm14046 processed_pseudogene Interval_143477 chr7 7150046 7152099 + 0 NA Intergenic Intergenic 3445 ENSMUSG00000110339.1 ENSMUSG00000110339 ENSMUST00000169206 Vmn2r-ps35 unprocessed_pseudogene Interval_20806 chr10 121097902 121098423 + 0 NA intron (ENSMUSG00000020218.11, intron 9 of 9) protein_coding-intron (ENSMUSG00000020218.11, intron 9 of 9) 17083 ENSMUSG00000112780.1 ENSMUSG00000112780 ENSMUST00000217935 Gm48410 lincRNA Interval_69315 chr16 92157592 92159292 + 0 NA intron (ENSMUSG00000116747.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000116747.1, intron 1 of 2) 4195 ENSMUSG00000116608.1 ENSMUSG00000116608 ENSMUST00000232211 Gm41495 lincRNA Interval_49437 chr13 111986384 111986893 + 0 NA Intergenic Intergenic -4828 ENSMUSG00000086402.1 ENSMUSG00000086402 ENSMUST00000142621 Gm15322 lincRNA Interval_107958 chr3 117487409 117487614 + 0 NA intron (ENSMUSG00000033342.15, intron 1 of 5) protein_coding-intron (ENSMUSG00000033342.15, intron 1 of 5) 2427 ENSMUSG00000033342.15 ENSMUSG00000033342 ENSMUST00000106473 Plppr5 protein_coding Interval_27736 chr11 69731527 69732514 + 0 NA Intergenic Intergenic -1436 ENSMUSG00000081333.1 ENSMUSG00000081333 ENSMUST00000120581 Gm12307 processed_pseudogene Interval_54577 chr14 70772707 70773366 + 0 NA promoter-TSS (ENSMUSG00000022102.13) protein_coding-promoter-TSS (ENSMUSG00000022102.13) -2843 ENSMUSG00000022102.13 ENSMUSG00000022102 ENSMUST00000164691 Dok2 protein_coding Interval_155269 chr8 29360064 29360805 + 0 NA Intergenic Intergenic -73453 ENSMUSG00000110331.1 ENSMUSG00000110331 ENSMUST00000209275 Nudc-ps1 processed_pseudogene Interval_1029 chr1 14202072 14202651 + 0 NA intron (ENSMUSG00000025932.14, intron 11 of 16) protein_coding-intron (ENSMUSG00000025932.14, intron 12 of 17) 19783 ENSMUSG00000095853.1 ENSMUSG00000095853 ENSMUST00000179783 Gm22616 miRNA Interval_131118 chr5 135246575 135246824 + 0 NA TTS (ENSMUSG00000002748.7) protein_coding-TTS (ENSMUSG00000002748.7) 4531 ENSMUSG00000049551.2 ENSMUSG00000049551 ENSMUST00000062572 Fzd9 protein_coding Interval_133779 chr6 12059555 12059892 + 0 NA intron (ENSMUSG00000029629.17, intron 3 of 3) protein_coding-intron (ENSMUSG00000029629.17, intron 17 of 17) 15344 ENSMUSG00000029629.17 ENSMUSG00000029629 ENSMUST00000214543 Phf14 protein_coding Interval_105307 chr3 84734641 84736065 + 0 NA intron (ENSMUSG00000102805.5, intron 3 of 9) protein_coding-intron (ENSMUSG00000102805.5, intron 3 of 9) 69143 ENSMUSG00000056498.13 ENSMUSG00000056498 ENSMUST00000128344 Tmem154 protein_coding Interval_3699 chr1 61180327 61181639 + 0 NA Intergenic Intergenic 16259 ENSMUSG00000080785.1 ENSMUSG00000080785 ENSMUST00000120063 Gm11591 processed_pseudogene Interval_49034 chr13 107105517 107106374 + 0 NA Intergenic Intergenic 42252 ENSMUSG00000114311.1 ENSMUSG00000114311 ENSMUST00000224729 Gm31452 lincRNA Interval_122007 chr5 13763404 13765227 + 0 NA exon (ENSMUSG00000105833.1, exon 1 of 1) processed_pseudogene-exon (ENSMUSG00000105833.1, exon 1 of 1) 697 ENSMUSG00000105833.1 ENSMUSG00000105833 ENSMUST00000200620 Gm4751 processed_pseudogene Interval_150374 chr7 109998199 109999035 + 0 NA exon (ENSMUSG00000101585.6, exon 4 of 4) antisense-exon (ENSMUSG00000101585.6, exon 4 of 4) -4961 ENSMUSG00000065389.1 ENSMUSG00000065389 ENSMUST00000083455 Gm23100 snRNA Interval_126664 chr5 91911584 91911841 + 0 NA intron (ENSMUSG00000107301.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000107301.1, intron 1 of 1) 1691 ENSMUSG00000107301.1 ENSMUSG00000107301 ENSMUST00000202249 Gm43688 lincRNA Interval_148831 chr7 89157361 89157557 + 0 NA intron (ENSMUSG00000039428.11, intron 2 of 3) protein_coding-intron (ENSMUSG00000039428.11, intron 8 of 14) -11962 ENSMUSG00000039428.11 ENSMUSG00000039428 ENSMUST00000137723 Tmem135 protein_coding Interval_121416 chr4 155652776 155655586 + 0 NA promoter-TSS (ENSMUSG00000029061.2) protein_coding-promoter-TSS (ENSMUSG00000029061.2) -2156 ENSMUSG00000029061.2 ENSMUSG00000029061 ENSMUST00000139242 Mmp23 protein_coding Interval_117625 chr4 125122664 125123184 + 0 NA promoter-TSS (ENSMUSG00000042677.7) protein_coding-promoter-TSS (ENSMUSG00000042677.7) -404 ENSMUSG00000042677.7 ENSMUSG00000042677 ENSMUST00000131685 Zc3h12a protein_coding Interval_141495 chr6 128625400 128626127 + 0 NA Intergenic Intergenic -2850 ENSMUSG00000030361.16 ENSMUSG00000030361 ENSMUST00000203150 Klrb1a protein_coding Interval_128460 chr5 113446659 113446849 + 0 NA Intergenic Intergenic 89460 ENSMUSG00000053873.1 ENSMUSG00000053873 ENSMUST00000066573 Aym1 protein_coding Interval_146359 chr7 45509569 45510707 + 0 NA exon (ENSMUSG00000030824.17, exon 1 of 4) protein_coding-exon (ENSMUSG00000030824.17, exon 1 of 4) 268 ENSMUSG00000030824.17 ENSMUSG00000030824 ENSMUST00000210208 Nucb1 protein_coding Interval_21303 chr10 127744695 127747838 + 0 NA exon (ENSMUSG00000044617.8, exon 2 of 2) protein_coding-exon (ENSMUSG00000044617.8, exon 2 of 2) 5466 ENSMUSG00000058396.7 ENSMUSG00000058396 ENSMUST00000079692 Gpr182 protein_coding Interval_87577 chr19 53541692 53542553 + 0 NA exon (ENSMUSG00000034765.6, exon 4 of 4) protein_coding-exon (ENSMUSG00000034765.6, exon 4 of 4) -12467 ENSMUSG00000118210.1 ENSMUSG00000118210 ENSMUST00000236686 Gm50394 antisense Interval_133406 chr6 4754576 4755633 + 0 NA exon (ENSMUSG00000092035.8, exon 2 of 3) protein_coding-exon (ENSMUSG00000092035.8, exon 2 of 3) 7698 ENSMUSG00000092035.8 ENSMUSG00000092035 ENSMUST00000176551 Peg10 protein_coding Interval_18118 chr10 82777586 82779346 + 0 NA TTS (ENSMUSG00000112286.1) lincRNA-TTS (ENSMUSG00000112286.1) 7145 ENSMUSG00000112286.1 ENSMUSG00000112286 ENSMUST00000219360 Gm47561 lincRNA Interval_173596 chrX 100597463 100597948 + 0 NA Intergenic Intergenic -2836 ENSMUSG00000044359.1 ENSMUSG00000044359 ENSMUST00000053373 P2ry4 protein_coding Interval_77647 chr17 93540698 93540936 + 0 NA Intergenic Intergenic 139848 ENSMUSG00000117514.1 ENSMUSG00000117514 ENSMUST00000234106 Gm50002 processed_pseudogene Interval_148660 chr7 83920997 83921504 + 0 NA Intergenic Intergenic 26197 ENSMUSG00000038503.15 ENSMUSG00000038503 ENSMUST00000207373 Mesd protein_coding Interval_36327 chr12 41273708 41274332 + 0 NA intron (ENSMUSG00000056899.10, intron 3 of 5) protein_coding-intron (ENSMUSG00000056899.10, intron 4 of 6) 74070 ENSMUSG00000113086.1 ENSMUSG00000113086 ENSMUST00000223331 Gm47376 antisense Interval_20938 chr10 122524949 122526736 + 0 NA intron (ENSMUSG00000112873.1, intron 1 of 2) antisense-intron (ENSMUSG00000112873.1, intron 1 of 2) 20656 ENSMUSG00000112873.1 ENSMUSG00000112873 ENSMUST00000218285 Gm48877 antisense Interval_41885 chr13 3878769 3880064 + 0 NA Intergenic Intergenic 20832 ENSMUSG00000113128.1 ENSMUSG00000113128 ENSMUST00000223370 Gm47813 TEC Interval_150014 chr7 104833245 104833805 + 0 NA Intergenic Intergenic 9078 ENSMUSG00000062369.2 ENSMUSG00000062369 ENSMUST00000076501 Usp17lb protein_coding Interval_4433 chr1 74124183 74125649 + 0 NA promoter-TSS (ENSMUSG00000061815.11) protein_coding-promoter-TSS (ENSMUSG00000061815.11) -663 ENSMUSG00000061815.11 ENSMUSG00000061815 ENSMUST00000127134 Rufy4 protein_coding Interval_74584 chr17 53543081 53544085 + 0 NA Intergenic Intergenic -4132 ENSMUSG00000044957.3 ENSMUSG00000044957 ENSMUST00000056198 Pp2d1 protein_coding Interval_8265 chr1 136832331 136833140 + 0 NA Intergenic Intergenic -33776 ENSMUSG00000104261.1 ENSMUSG00000104261 ENSMUST00000195232 Gm17781 processed_pseudogene Interval_68036 chr16 64495355 64495568 + 0 NA intron (ENSMUSG00000068167.6, intron 2 of 2) protein_coding-intron (ENSMUSG00000068167.6, intron 2 of 2) 106947 ENSMUSG00000068167.6 ENSMUSG00000068167 ENSMUST00000089279 Csnka2ip protein_coding Interval_52032 chr14 34722742 34722961 + 0 NA intron (ENSMUSG00000041408.18, intron 2 of 2) protein_coding-intron (ENSMUSG00000041408.18, intron 5 of 18) -14420 ENSMUSG00000041408.18 ENSMUSG00000041408 ENSMUST00000174559 Wapl protein_coding Interval_131980 chr5 141740759 141741060 + 0 NA intron (ENSMUSG00000039683.16, intron 4 of 9) protein_coding-intron (ENSMUSG00000039683.16, intron 4 of 44) -124907 ENSMUSG00000085540.1 ENSMUSG00000085540 ENSMUST00000150385 Gm16036 antisense Interval_57891 chr15 25026860 25027536 + 0 NA intron (ENSMUSG00000097452.2, intron 1 of 1) lincRNA-intron (ENSMUSG00000097452.2, intron 1 of 1) -8804 ENSMUSG00000097452.2 ENSMUSG00000097452 ENSMUST00000226189 Gm2824 lincRNA Interval_96281 chr2 121270179 121271791 + 0 NA promoter-TSS (ENSMUSG00000043909.16) protein_coding-promoter-TSS (ENSMUSG00000043909.16) -24478 ENSMUSG00000027254.13 ENSMUSG00000027254 ENSMUST00000133283 Map1a protein_coding Interval_114713 chr4 84199006 84199448 + 0 NA Intergenic Intergenic -68938 ENSMUSG00000087378.1 ENSMUSG00000087378 ENSMUST00000150794 Gm12414 lincRNA Interval_139237 chr6 97441472 97441711 + 0 NA intron (ENSMUSG00000030064.16, intron 2 of 7) protein_coding-intron (ENSMUSG00000030064.16, intron 1 of 22) -8159 ENSMUSG00000108185.1 ENSMUSG00000108185 ENSMUST00000204326 Gm19653 processed_pseudogene Interval_31465 chr11 100833080 100833698 + 0 NA intron (ENSMUSG00000020919.11, intron 1 of 5) protein_coding-intron (ENSMUSG00000020919.11, intron 1 of 18) 17149 ENSMUSG00000020919.11 ENSMUSG00000020919 ENSMUST00000126266 Stat5b protein_coding Interval_159067 chr8 89353543 89354118 + 0 NA Intergenic Intergenic -166270 ENSMUSG00000069962.3 ENSMUSG00000069962 ENSMUST00000093326 Gm5356 processed_pseudogene Interval_104258 chr3 62317051 62317640 + 0 NA Intergenic Intergenic 23187 ENSMUSG00000103502.1 ENSMUSG00000103502 ENSMUST00000192267 9330121J05Rik antisense Interval_115850 chr4 105230223 105230656 + 0 NA intron (ENSMUSG00000028517.8, intron 5 of 5) protein_coding-intron (ENSMUSG00000028517.8, intron 5 of 5) 73092 ENSMUSG00000028517.8 ENSMUSG00000028517 ENSMUST00000064139 Plpp3 protein_coding Interval_34769 chr12 10603764 10604134 + 0 NA Intergenic Intergenic 110449 ENSMUSG00000112127.1 ENSMUSG00000112127 ENSMUST00000219091 Gm48886 processed_pseudogene Interval_89304 chr2 19053785 19054074 + 0 NA Intergenic Intergenic 49169 ENSMUSG00000083281.1 ENSMUSG00000083281 ENSMUST00000120451 Gm13332 processed_pseudogene Interval_147497 chr7 67733781 67733985 + 0 NA exon (ENSMUSG00000030554.16, exon 4 of 4) protein_coding-exon (ENSMUSG00000030554.16, exon 4 of 4) -25434 ENSMUSG00000108871.1 ENSMUSG00000108871 ENSMUST00000207427 Gm45102 TEC Interval_132936 chr5 148836888 148837800 + 0 NA intron (ENSMUSG00000087647.2, intron 3 of 3) lincRNA-intron (ENSMUSG00000087647.2, intron 3 of 3) 16577 ENSMUSG00000087647.2 ENSMUSG00000087647 ENSMUST00000136919 Gm15407 lincRNA Interval_54837 chr14 75726790 75727475 + 0 NA intron (ENSMUSG00000034893.9, intron 10 of 17) protein_coding-intron (ENSMUSG00000034893.9, intron 14 of 22) 5855 ENSMUSG00000034893.9 ENSMUSG00000034893 ENSMUST00000228081 Cog3 protein_coding Interval_4415 chr1 74020301 74020500 + 0 NA intron (ENSMUSG00000055322.16, intron 3 of 32) protein_coding-intron (ENSMUSG00000055322.16, intron 3 of 34) 78276 ENSMUSG00000055322.16 ENSMUSG00000055322 ENSMUST00000190599 Tns1 protein_coding Interval_121098 chr4 152999086 152999868 + 0 NA Intergenic Intergenic 14107 ENSMUSG00000080360.1 ENSMUSG00000080360 ENSMUST00000116710 Gm25779 miRNA Interval_128807 chr5 115375430 115375708 + 0 NA intron (ENSMUSG00000087292.1, intron 2 of 2) lincRNA-intron (ENSMUSG00000087292.1, intron 2 of 2) -15446 ENSMUSG00000086352.1 ENSMUSG00000086352 ENSMUST00000139500 4930401G09Rik lincRNA Interval_128158 chr5 111378275 111378652 + 0 NA intron (ENSMUSG00000050017.11, intron 8 of 10) protein_coding-intron (ENSMUSG00000050017.11, intron 8 of 11) 9826 ENSMUSG00000104559.1 ENSMUSG00000104559 ENSMUST00000199149 Gm43118 antisense Interval_118774 chr4 133639006 133639244 + 0 NA promoter-TSS (ENSMUSG00000083885.1) processed_pseudogene-promoter-TSS (ENSMUSG00000083885.1) -442 ENSMUSG00000083885.1 ENSMUSG00000083885 ENSMUST00000119668 Gm13213 processed_pseudogene Interval_130401 chr5 127324172 127324479 + 0 NA intron (ENSMUSG00000034324.16, intron 1 of 8) protein_coding-intron (ENSMUSG00000034324.16, intron 1 of 8) 15308 ENSMUSG00000104971.1 ENSMUSG00000104971 ENSMUST00000196548 9430087B13Rik TEC Interval_55210 chr14 79338821 79339167 + 0 NA intron (ENSMUSG00000022020.15, intron 6 of 7) protein_coding-intron (ENSMUSG00000022020.15, intron 18 of 19) 11827 ENSMUSG00000022020.15 ENSMUSG00000022020 ENSMUST00000165337 Naa16 protein_coding Interval_34545 chr12 5001750 5002030 + 0 NA intron (ENSMUSG00000052812.5, intron 5 of 7) protein_coding-intron (ENSMUSG00000052812.5, intron 21 of 30) -2522 ENSMUSG00000087780.1 ENSMUSG00000087780 ENSMUST00000157155 Gm23167 snRNA Interval_150027 chr7 105143504 105143820 + 0 NA exon (ENSMUSG00000044120.5, exon 1 of 1) protein_coding-exon (ENSMUSG00000044120.5, exon 1 of 1) 1885 ENSMUSG00000109918.1 ENSMUSG00000109918 ENSMUST00000211388 Gm45374 unprocessed_pseudogene Interval_106998 chr3 102717311 102718602 + 0 NA Intergenic Intergenic 3704 ENSMUSG00000105570.1 ENSMUSG00000105570 ENSMUST00000198349 Gm42682 lincRNA Interval_16046 chr10 60282644 60283501 + 0 NA intron (ENSMUSG00000004207.14, intron 1 of 14) protein_coding-intron (ENSMUSG00000004207.14, intron 1 of 13) 5444 ENSMUSG00000004207.14 ENSMUSG00000004207 ENSMUST00000165878 Psap protein_coding Interval_130176 chr5 124761012 124762044 + 0 NA intron (ENSMUSG00000038011.15, intron 19 of 77) protein_coding-intron (ENSMUSG00000038011.15, intron 20 of 78) -25025 ENSMUSG00000038011.15 ENSMUSG00000038011 ENSMUST00000196708 Dnah10 protein_coding Interval_20392 chr10 117295272 117295483 + 0 NA Intergenic Intergenic -2509 ENSMUSG00000069515.6 ENSMUSG00000069515 ENSMUST00000092162 Lyz1 protein_coding Interval_30042 chr11 88856251 88856680 + 0 NA intron (ENSMUSG00000092399.1, intron 2 of 4) protein_coding-intron (ENSMUSG00000018428.15, intron 1 of 10) 4861 ENSMUSG00000092399.1 ENSMUSG00000092399 ENSMUST00000173677 4930556N13Rik antisense Interval_114253 chr4 70179165 70179599 + 0 NA Intergenic Intergenic 69991 ENSMUSG00000080902.1 ENSMUSG00000080902 ENSMUST00000120944 Ywhaq-ps3 transcribed_processed_pseudogene Interval_3584 chr1 59749206 59750393 + 0 NA Intergenic Intergenic 45009 ENSMUSG00000089093.3 ENSMUSG00000089093 ENSMUST00000158468 Snord11 snoRNA Interval_23730 chr11 25473304 25474386 + 0 NA Intergenic Intergenic 172582 ENSMUSG00000086439.1 ENSMUSG00000086439 ENSMUST00000145127 Gm12069 lincRNA Interval_108109 chr3 121550351 121550583 + 0 NA Intergenic Intergenic 18838 ENSMUSG00000097124.2 ENSMUSG00000097124 ENSMUST00000180804 A530020G20Rik antisense Interval_171909 chr9 122442859 122443071 + 0 NA Intergenic Intergenic -4800 ENSMUSG00000111146.1 ENSMUSG00000111146 ENSMUST00000213143 Gm35454 lincRNA Interval_35053 chr12 16879978 16880223 + 0 NA Intergenic Intergenic -29219 ENSMUSG00000114018.1 ENSMUSG00000114018 ENSMUST00000221201 Gm36495 lincRNA Interval_16286 chr10 61972011 61972507 + 0 NA intron (ENSMUSG00000058806.15, intron 1 of 40) protein_coding-intron (ENSMUSG00000058806.15, intron 1 of 33) 12635 ENSMUSG00000112574.1 ENSMUSG00000112574 ENSMUST00000218711 Gm5750 processed_pseudogene Interval_62881 chr15 97680052 97680594 + 0 NA promoter-TSS (ENSMUSG00000022466.6) protein_coding-promoter-TSS (ENSMUSG00000022466.6) 30 ENSMUSG00000022466.6 ENSMUSG00000022466 ENSMUST00000229008 Rpap3 protein_coding Interval_63472 chr15 101276468 101278802 + 0 NA Intergenic Intergenic 4774 ENSMUSG00000023034.7 ENSMUSG00000023034 ENSMUST00000231153 Nr4a1 protein_coding Interval_159377 chr8 94172000 94173423 + 0 NA promoter-TSS (ENSMUSG00000031762.7) protein_coding-promoter-TSS (ENSMUSG00000031762.7) -149 ENSMUSG00000031762.7 ENSMUSG00000031762 ENSMUST00000212806 Mt2 protein_coding Interval_128826 chr5 115482633 115483119 + 0 NA promoter-TSS (ENSMUSG00000029524.16) protein_coding-promoter-TSS (ENSMUSG00000029524.16) -2938 ENSMUSG00000029524.16 ENSMUSG00000029524 ENSMUST00000127479 Sirt4 protein_coding Interval_100386 chr2 168750186 168750776 + 0 NA intron (ENSMUSG00000027547.17, intron 3 of 3) protein_coding-intron (ENSMUSG00000027547.17, intron 3 of 3) 5462 ENSMUSG00000027547.17 ENSMUSG00000027547 ENSMUST00000130640 Sall4 protein_coding Interval_88174 chr19 60308212 60308837 + 0 NA Intergenic Intergenic 66671 ENSMUSG00000099678.1 ENSMUSG00000099678 ENSMUST00000186261 Gm28351 lincRNA Interval_84654 chr19 14679281 14680366 + 0 NA Intergenic Intergenic 21156 ENSMUSG00000103488.1 ENSMUSG00000103488 ENSMUST00000193515 Gm37997 TEC Interval_111182 chr4 14435465 14435690 + 0 NA Intergenic Intergenic 1686 ENSMUSG00000081239.3 ENSMUSG00000081239 ENSMUST00000121022 Gm11836 processed_pseudogene Interval_35815 chr12 30254604 30254815 + 0 NA intron (ENSMUSG00000020672.14, intron 8 of 15) protein_coding-intron (ENSMUSG00000020672.14, intron 9 of 16) 118586 ENSMUSG00000020672.14 ENSMUSG00000020672 ENSMUST00000218489 Sntg2 protein_coding Interval_113180 chr4 49050252 49051036 + 0 NA Intergenic Intergenic -8812 ENSMUSG00000063446.4 ENSMUSG00000063446 ENSMUST00000151692 Plppr1 protein_coding Interval_122586 chr5 24020789 24021233 + 0 NA intron (ENSMUSG00000028995.14, intron 1 of 10) protein_coding-intron (ENSMUSG00000028995.14, intron 1 of 10) -10599 ENSMUSG00000105866.1 ENSMUSG00000105866 ENSMUST00000199216 Gm6745 processed_pseudogene Interval_14435 chr10 33703654 33704048 + 0 NA Intergenic Intergenic -11041 ENSMUSG00000112656.1 ENSMUSG00000112656 ENSMUST00000217937 Gm47929 unprocessed_pseudogene Interval_157145 chr8 66345018 66345484 + 0 NA intron (ENSMUSG00000036469.16, intron 2 of 5) protein_coding-intron (ENSMUSG00000036469.16, intron 2 of 5) 42284 ENSMUSG00000086156.1 ENSMUSG00000086156 ENSMUST00000132019 Gm15354 antisense Interval_106101 chr3 93111462 93111891 + 0 NA Intergenic Intergenic -11079 ENSMUSG00000103628.1 ENSMUSG00000103628 ENSMUST00000194345 Gm37361 processed_pseudogene Interval_154473 chr8 18547372 18547622 + 0 NA Intergenic Intergenic -34852 ENSMUSG00000077675.1 ENSMUSG00000077675 ENSMUST00000104487 Gm24469 snoRNA Interval_12322 chr1 191717524 191719490 + 0 NA promoter-TSS (ENSMUSG00000026623.16) protein_coding-promoter-TSS (ENSMUSG00000026623.16) 480 ENSMUSG00000026623.16 ENSMUSG00000026623 ENSMUST00000130876 Lpgat1 protein_coding Interval_49017 chr13 106941348 106942049 + 0 NA Intergenic Intergenic 3831 ENSMUSG00000114572.1 ENSMUSG00000114572 ENSMUST00000225875 Gm48457 processed_pseudogene Interval_141090 chr6 124909698 124910632 + 0 NA promoter-TSS (ENSMUSG00000030124.2) protein_coding-promoter-TSS (ENSMUSG00000030124.2) -114 ENSMUSG00000030124.2 ENSMUSG00000030124 ENSMUST00000139571 Lag3 protein_coding Interval_126992 chr5 99248248 99248691 + 0 NA intron (ENSMUSG00000089809.9, intron 4 of 16) protein_coding-intron (ENSMUSG00000089809.9, intron 1 of 13) -25626 ENSMUSG00000105686.1 ENSMUSG00000105686 ENSMUST00000196434 Gm35394 lincRNA Interval_114869 chr4 86574855 86576433 + 0 NA promoter-TSS (ENSMUSG00000070934.6) protein_coding-promoter-TSS (ENSMUSG00000070934.6) -24 ENSMUSG00000070934.6 ENSMUSG00000070934 ENSMUST00000091064 Rraga protein_coding Interval_59996 chr15 63589375 63590239 + 0 NA intron (ENSMUSG00000115520.2, intron 2 of 8) lincRNA-intron (ENSMUSG00000115520.2, intron 2 of 8) -41890 ENSMUSG00000095812.1 ENSMUSG00000095812 ENSMUST00000179326 Gm5473 processed_pseudogene Interval_120314 chr4 145383243 145383481 + 0 NA Intergenic Intergenic -7581 ENSMUSG00000082758.1 ENSMUSG00000082758 ENSMUST00000121756 Gm13024 processed_pseudogene Interval_4742 chr1 78203071 78204531 + 0 NA Intergenic Intergenic -6688 ENSMUSG00000004872.15 ENSMUSG00000004872 ENSMUST00000172555 Pax3 protein_coding Interval_45630 chr13 56359148 56359741 + 0 NA Intergenic Intergenic -3456 ENSMUSG00000074885.4 ENSMUSG00000074885 ENSMUST00000099476 Gm10782 lincRNA Interval_50286 chr14 11656042 11656486 + 0 NA intron (ENSMUSG00000021745.14, intron 1 of 3) protein_coding-intron (ENSMUSG00000021745.14, intron 1 of 29) -111679 ENSMUSG00000114310.1 ENSMUSG00000114310 ENSMUST00000225152 Gm48602 TEC Interval_168451 chr9 80706050 80706304 + 0 NA Intergenic Intergenic -3818 ENSMUSG00000111717.1 ENSMUSG00000111717 ENSMUST00000214710 Gm39380 lincRNA Interval_21332 chr10 128035037 128037388 + 0 NA intron (ENSMUSG00000061315.14, intron 1 of 8) protein_coding-intron (ENSMUSG00000061315.14, intron 1 of 7) 577 ENSMUSG00000061315.14 ENSMUSG00000061315 ENSMUST00000092048 Naca protein_coding Interval_169425 chr9 97141480 97142493 + 0 NA Intergenic Intergenic -37193 ENSMUSG00000101502.1 ENSMUSG00000101502 ENSMUST00000190579 Rpl7a-ps10 processed_pseudogene Interval_106744 chr3 100312917 100313573 + 0 NA Intergenic Intergenic 9957 ENSMUSG00000064573.1 ENSMUSG00000064573 ENSMUST00000082639 Gm25802 snoRNA Interval_52014 chr14 34620881 34621247 + 0 NA Intergenic Intergenic -29225 ENSMUSG00000021799.9 ENSMUSG00000021799 ENSMUST00000022331 Opn4 protein_coding Interval_108372 chr3 126277697 126277983 + 0 NA promoter-TSS (ENSMUSG00000106094.1) processed_pseudogene-promoter-TSS (ENSMUSG00000106094.1) -190 ENSMUSG00000106094.1 ENSMUSG00000106094 ENSMUST00000198264 Gm18916 processed_pseudogene Interval_108436 chr3 127202582 127203216 + 0 NA intron (ENSMUSG00000032826.19, intron 1 of 31) protein_coding-intron (ENSMUSG00000032826.19, intron 3 of 14) -18926 ENSMUSG00000105202.1 ENSMUSG00000105202 ENSMUST00000197856 C230031I18Rik TEC Interval_64584 chr16 13490508 13490790 + 0 NA Intergenic Intergenic -19469 ENSMUSG00000099214.1 ENSMUSG00000099214 ENSMUST00000183990 Mir6365 miRNA Interval_131767 chr5 139754738 139755335 + 0 NA promoter-TSS (ENSMUSG00000029547.10) protein_coding-promoter-TSS (ENSMUSG00000029547.10) 12907 ENSMUSG00000098574.1 ENSMUSG00000098574 ENSMUST00000184414 Mir7037 miRNA Interval_27257 chr11 65003158 65003615 + 0 NA exon (ENSMUSG00000033389.16, exon 21 of 21) protein_coding-exon (ENSMUSG00000033389.16, exon 21 of 21) 24314 ENSMUSG00000020549.14 ENSMUSG00000020549 ENSMUST00000128693 Elac2 protein_coding Interval_157878 chr8 75145744 75146864 + 0 NA Intergenic Intergenic -30154 ENSMUSG00000110693.1 ENSMUSG00000110693 ENSMUST00000212196 Gm45899 lincRNA Interval_58985 chr15 41347160 41347709 + 0 NA Intergenic Intergenic -104276 ENSMUSG00000116178.1 ENSMUSG00000116178 ENSMUST00000229823 Gm49529 processed_pseudogene Interval_156087 chr8 43977299 43978108 + 0 NA Intergenic Intergenic -61547 ENSMUSG00000080348.1 ENSMUSG00000080348 ENSMUST00000116698 Gm24591 miRNA Interval_135368 chr6 38662727 38663866 + 0 NA promoter-TSS (ENSMUSG00000079598.4) protein_coding-promoter-TSS (ENSMUSG00000079598.4) -583 ENSMUSG00000079598.4 ENSMUSG00000079598 ENSMUST00000238216 Clec2l protein_coding Interval_124675 chr5 53123680 53123942 + 0 NA intron (ENSMUSG00000029189.10, intron 17 of 23) protein_coding-intron (ENSMUSG00000029189.10, intron 17 of 23) -19349 ENSMUSG00000077316.1 ENSMUSG00000077316 ENSMUST00000104128 n-R5s171 rRNA Interval_173502 chrX 96130358 96131099 + 0 NA intron (ENSMUSG00000031207.16, intron 1 of 3) protein_coding-intron (ENSMUSG00000031207.16, intron 1 of 12) 20244 ENSMUSG00000088146.1 ENSMUSG00000088146 ENSMUST00000157521 Gm24718 scaRNA Interval_33517 chr11 116993642 116994959 + 0 NA Intergenic Intergenic 45888 ENSMUSG00000086902.7 ENSMUSG00000086902 ENSMUST00000152401 Gm11728 lincRNA Interval_75949 chr17 73519827 73520021 + 0 NA exon (ENSMUSG00000024064.14, exon 10 of 10) protein_coding-exon (ENSMUSG00000024064.14, exon 10 of 10) -2169 ENSMUSG00000117102.1 ENSMUSG00000117102 ENSMUST00000233431 AC107792.1 TEC Interval_84364 chr19 10388450 10389805 + 0 NA promoter-TSS (ENSMUSG00000024743.16) protein_coding-promoter-TSS (ENSMUSG00000024743.16) -356 ENSMUSG00000024743.16 ENSMUSG00000024743 ENSMUST00000235717 Syt7 protein_coding Interval_87584 chr19 53579071 53579364 + 0 NA Intergenic Intergenic 9851 ENSMUSG00000071497.4 ENSMUSG00000071497 ENSMUST00000095978 Nutf2-ps1 protein_coding Interval_80452 chr18 42330409 42330798 + 0 NA intron (ENSMUSG00000024491.16, intron 12 of 15) protein_coding-intron (ENSMUSG00000024491.16, intron 16 of 19) 28713 ENSMUSG00000092935.1 ENSMUSG00000092935 ENSMUST00000175194 Gm22697 miRNA Interval_8238 chr1 136661347 136662050 + 0 NA Intergenic Intergenic -21698 ENSMUSG00000097113.7 ENSMUSG00000097113 ENSMUST00000180962 Gm19705 lincRNA Interval_143456 chr7 6937051 6937414 + 0 NA intron (ENSMUSG00000051527.11, intron 6 of 8) protein_coding-intron (ENSMUSG00000051527.11, intron 5 of 7) 36880 ENSMUSG00000109094.1 ENSMUSG00000109094 ENSMUST00000207399 Gm44587 TEC Interval_148175 chr7 79646470 79647807 + 0 NA Intergenic Intergenic -23783 ENSMUSG00000046591.10 ENSMUSG00000046591 ENSMUST00000206677 Ticrr protein_coding Interval_38050 chr12 75280374 75280833 + 0 NA Intergenic Intergenic -28278 ENSMUSG00000046768.13 ENSMUSG00000046768 ENSMUST00000172981 Rhoj protein_coding Interval_43544 chr13 32964729 32966033 + 0 NA promoter-TSS (ENSMUSG00000042842.11) protein_coding-promoter-TSS (ENSMUSG00000042842.11) -6117 ENSMUSG00000042842.11 ENSMUSG00000042842 ENSMUST00000222967 Serpinb6b protein_coding Interval_54308 chr14 67486613 67487639 + 0 NA intron (ENSMUSG00000114744.1, intron 2 of 3) lincRNA-intron (ENSMUSG00000114744.1, intron 2 of 3) 10253 ENSMUSG00000114744.1 ENSMUSG00000114744 ENSMUST00000223991 Gm38409 lincRNA Interval_138655 chr6 90809824 90810527 + 0 NA promoter-TSS (ENSMUSG00000034312.15) protein_coding-promoter-TSS (ENSMUSG00000034312.15) -15700 ENSMUSG00000107795.1 ENSMUSG00000107795 ENSMUST00000204401 Gm44105 sense_intronic Interval_7090 chr1 125662802 125663603 + 0 NA Intergenic Intergenic 5414 ENSMUSG00000101015.1 ENSMUSG00000101015 ENSMUST00000191239 Gm18444 processed_pseudogene Interval_36414 chr12 44181271 44181892 + 0 NA Intergenic Intergenic 21590 ENSMUSG00000111920.1 ENSMUSG00000111920 ENSMUST00000219471 Gm7370 processed_pseudogene Interval_108764 chr3 131128815 131129062 + 0 NA intron (ENSMUSG00000027985.14, intron 2 of 2) protein_coding-intron (ENSMUSG00000027985.14, intron 3 of 11) -7847 ENSMUSG00000104612.1 ENSMUSG00000104612 ENSMUST00000200349 Gm42449 TEC Interval_82374 chr18 73313238 73314888 + 0 NA Intergenic Intergenic 219487 ENSMUSG00000065922.1 ENSMUSG00000065922 ENSMUST00000083988 n-R5-8s1 rRNA Interval_47087 chr13 75543960 75544793 + 0 NA Intergenic Intergenic -20028 ENSMUSG00000113929.1 ENSMUSG00000113929 ENSMUST00000223378 Gm3926 processed_pseudogene Interval_32899 chr11 112898612 112899278 + 0 NA Intergenic Intergenic 73766 ENSMUSG00000020624.3 ENSMUSG00000020624 ENSMUST00000153429 4933434M16Rik lincRNA Interval_11807 chr1 185575773 185576202 + 0 NA Intergenic Intergenic 88693 ENSMUSG00000102185.1 ENSMUSG00000102185 ENSMUST00000192616 5033404E19Rik transcribed_processed_pseudogene Interval_92188 chr2 55628366 55629471 + 0 NA Intergenic Intergenic -146630 ENSMUSG00000082971.1 ENSMUSG00000082971 ENSMUST00000120782 Gm13517 processed_pseudogene Interval_127199 chr5 101158780 101158996 + 0 NA Intergenic Intergenic -146690 ENSMUSG00000105965.1 ENSMUSG00000105965 ENSMUST00000197114 Cycs-ps2 processed_pseudogene Interval_127532 chr5 104859193 104860634 + 0 NA promoter-TSS (ENSMUSG00000072774.10) protein_coding-promoter-TSS (ENSMUSG00000072774.10) -120 ENSMUSG00000072774.10 ENSMUSG00000072774 ENSMUST00000191135 Zfp951 protein_coding Interval_8631 chr1 145109959 145110656 + 0 NA Intergenic Intergenic 55636 ENSMUSG00000099617.1 ENSMUSG00000099617 ENSMUST00000187574 Gm6550 processed_pseudogene Interval_87608 chr19 53717156 53717816 + 0 NA intron (ENSMUSG00000043639.15, intron 1 of 13) protein_coding-intron (ENSMUSG00000043639.15, intron 1 of 13) 40180 ENSMUSG00000043639.15 ENSMUSG00000043639 ENSMUST00000161856 Rbm20 protein_coding Interval_65525 chr16 23081097 23081710 + 0 NA intron (ENSMUSG00000022875.18, intron 10 of 10) protein_coding-intron (ENSMUSG00000022875.18, intron 10 of 10) -11540 ENSMUSG00000116625.1 ENSMUSG00000116625 ENSMUST00000231398 Gm8134 processed_pseudogene Interval_88254 chr19 61175242 61176828 + 0 NA exon (ENSMUSG00000094649.1, exon 1 of 1) protein_coding-exon (ENSMUSG00000094649.1, exon 1 of 1) 274 ENSMUSG00000094649.1 ENSMUSG00000094649 ENSMUST00000180168 Gm7102 protein_coding Interval_76592 chr17 82153171 82154327 + 0 NA Intergenic Intergenic 38860 ENSMUSG00000117507.1 ENSMUSG00000117507 ENSMUST00000234943 Gm50045 processed_pseudogene Interval_100539 chr2 170025084 170025329 + 0 NA intron (ENSMUSG00000047907.11, intron 1 of 1) protein_coding-intron (ENSMUSG00000047907.11, intron 1 of 1) -62019 ENSMUSG00000103935.1 ENSMUSG00000103935 ENSMUST00000194482 AY702102 TEC Interval_37759 chr12 71777925 71778891 + 0 NA Intergenic Intergenic -10408 ENSMUSG00000113422.1 ENSMUSG00000113422 ENSMUST00000221469 Gm47556 processed_pseudogene Interval_73316 chr17 36161145 36162594 + 0 NA exon (ENSMUSG00000038311.13, exon 4 of 5) lincRNA-exon (ENSMUSG00000038311.13, exon 4 of 5) 210 ENSMUSG00000092366.2 ENSMUSG00000092366 ENSMUST00000174345 Gm17782 unprocessed_pseudogene Interval_66656 chr16 35890848 35891185 + 0 NA promoter-TSS (ENSMUSG00000116728.1) processed_pseudogene-promoter-TSS (ENSMUSG00000116728.1) -398 ENSMUSG00000116728.1 ENSMUSG00000116728 ENSMUST00000232076 Gm41467 processed_pseudogene Interval_493 chr1 6406244 6406575 + 0 NA Intergenic Intergenic -23303 ENSMUSG00000102706.1 ENSMUSG00000102706 ENSMUST00000192950 Gm7417 processed_pseudogene Interval_171474 chr9 118623613 118624209 + 0 NA intron (ENSMUSG00000039115.13, intron 1 of 27) protein_coding-intron (ENSMUSG00000039115.13, intron 1 of 27) -33716 ENSMUSG00000110676.1 ENSMUSG00000110676 ENSMUST00000212679 Gm45897 lincRNA Interval_128740 chr5 115026084 115026371 + 0 NA intron (ENSMUSG00000029550.11, intron 2 of 2) protein_coding-intron (ENSMUSG00000029550.11, intron 1 of 10) -13543 ENSMUSG00000107054.1 ENSMUSG00000107054 ENSMUST00000201944 C730045M19Rik TEC Interval_4735 chr1 78119585 78120430 + 0 NA intron (ENSMUSG00000004872.15, intron 7 of 7) protein_coding-intron (ENSMUSG00000004872.15, intron 7 of 8) 77106 ENSMUSG00000004872.15 ENSMUSG00000004872 ENSMUST00000172555 Pax3 protein_coding Interval_99487 chr2 162410909 162411170 + 0 NA intron (ENSMUSG00000053141.16, intron 1 of 29) protein_coding-intron (ENSMUSG00000053141.16, intron 1 of 30) 20226 ENSMUSG00000084919.1 ENSMUSG00000084919 ENSMUST00000151688 Ptprtos antisense Interval_86839 chr19 44280773 44281346 + 0 NA Intergenic Intergenic 8788 ENSMUSG00000117958.1 ENSMUSG00000117958 ENSMUST00000235961 Gm35183 transcribed_processed_pseudogene Interval_150437 chr7 110626235 110630884 + 0 NA TTS (ENSMUSG00000030790.15) protein_coding-TTS (ENSMUSG00000030790.15) 531 ENSMUSG00000030790.15 ENSMUSG00000030790 ENSMUST00000185766 Adm protein_coding Interval_24457 chr11 33418662 33420005 + 0 NA intron (ENSMUSG00000040594.19, intron 14 of 20) protein_coding-intron (ENSMUSG00000040594.19, intron 14 of 27) -19116 ENSMUSG00000083471.1 ENSMUSG00000083471 ENSMUST00000119766 Gm12118 processed_pseudogene Interval_107845 chr3 116126207 116126964 + 0 NA intron (ENSMUSG00000027962.14, intron 2 of 4) protein_coding-intron (ENSMUSG00000027962.14, intron 2 of 8) -1866 ENSMUSG00000104653.1 ENSMUSG00000104653 ENSMUST00000198269 Gm43109 antisense Interval_56191 chr14 111680775 111682210 + 0 NA exon (ENSMUSG00000033214.10, exon 2 of 2) protein_coding-exon (ENSMUSG00000033214.10, exon 2 of 2) 5643 ENSMUSG00000033214.10 ENSMUSG00000033214 ENSMUST00000227891 Slitrk5 protein_coding Interval_60263 chr15 71434532 71434878 + 0 NA exon (ENSMUSG00000036800.8, exon 20 of 20) protein_coding-exon (ENSMUSG00000036800.8, exon 20 of 20) 124871 ENSMUSG00000116355.1 ENSMUSG00000116355 ENSMUST00000229873 Gm5217 processed_pseudogene Interval_79901 chr18 35804267 35804629 + 0 NA intron (ENSMUSG00000117841.1, intron 4 of 4) protein_coding-intron (ENSMUSG00000091896.8, intron 6 of 7) 4606 ENSMUSG00000117841.1 ENSMUSG00000117841 ENSMUST00000235919 Gm50371 processed_transcript Interval_18722 chr10 89689934 89690169 + 0 NA intron (ENSMUSG00000097383.1, intron 2 of 2) bidirectional_promoter_lncRNA-intron (ENSMUSG00000097383.1, intron 2 of 2) 3680 ENSMUSG00000097383.1 ENSMUSG00000097383 ENSMUST00000181598 1500026H17Rik bidirectional_promoter_lncRNA Interval_129433 chr5 120143589 120144917 + 0 NA intron (ENSMUSG00000029594.12, intron 21 of 23) protein_coding-intron (ENSMUSG00000029594.12, intron 21 of 23) -4990 ENSMUSG00000097368.2 ENSMUSG00000097368 ENSMUST00000181905 Gm10390 antisense Interval_3858 chr1 63763303 63763574 + 0 NA intron (ENSMUSG00000025961.1, intron 2 of 2) protein_coding-intron (ENSMUSG00000025961.1, intron 2 of 2) 5829 ENSMUSG00000025961.1 ENSMUSG00000025961 ENSMUST00000027102 4933402D24Rik protein_coding Interval_160747 chr8 111932411 111934643 + 0 NA exon (ENSMUSG00000031951.8, exon 2 of 7) protein_coding-exon (ENSMUSG00000031951.8, exon 2 of 7) -5367 ENSMUSG00000031951.8 ENSMUSG00000031951 ENSMUST00000213050 Tmem231 protein_coding Interval_120795 chr4 150685971 150686593 + 0 NA Intergenic Intergenic -7490 ENSMUSG00000085869.1 ENSMUSG00000085869 ENSMUST00000149065 Gm16079 lincRNA Interval_38121 chr12 75772161 75773083 + 0 NA Intergenic Intergenic -36926 ENSMUSG00000021054.6 ENSMUSG00000021054 ENSMUST00000220285 Sgpp1 protein_coding Interval_14457 chr10 34013129 34013473 + 0 NA intron (ENSMUSG00000019782.10, intron 1 of 3) protein_coding-intron (ENSMUSG00000019782.10, intron 1 of 6) -5514 ENSMUSG00000111905.1 ENSMUSG00000111905 ENSMUST00000218530 Gm48045 antisense Interval_12542 chr1 195040261 195041146 + 0 NA exon (ENSMUSG00000016493.13, exon 11 of 11) protein_coding-exon (ENSMUSG00000016493.13, exon 11 of 11) -1680 ENSMUSG00000104010.1 ENSMUSG00000104010 ENSMUST00000194487 Gm37366 TEC Interval_84046 chr19 6941085 6942950 + 0 NA promoter-TSS (ENSMUSG00000024958.13) protein_coding-promoter-TSS (ENSMUSG00000024958.13) -446 ENSMUSG00000024959.14 ENSMUSG00000024959 ENSMUST00000145463 Bad protein_coding Interval_7930 chr1 134629561 134629807 + 0 NA intron (ENSMUSG00000042207.17, intron 25 of 25) protein_coding-intron (ENSMUSG00000042207.17, intron 25 of 26) 6884 ENSMUSG00000042207.17 ENSMUSG00000042207 ENSMUST00000191572 Kdm5b protein_coding Interval_89046 chr2 15007352 15007555 + 0 NA intron (ENSMUSG00000026707.15, intron 10 of 11) protein_coding-intron (ENSMUSG00000026707.15, intron 9 of 10) 26723 ENSMUSG00000103778.1 ENSMUSG00000103778 ENSMUST00000195431 Gm36930 TEC Interval_82688 chr18 75946149 75946570 + 0 NA intron (ENSMUSG00000044646.15, intron 2 of 5) protein_coding-intron (ENSMUSG00000044646.15, intron 2 of 4) 69318 ENSMUSG00000118311.1 ENSMUSG00000118311 ENSMUST00000238127 1700003O11Rik antisense Interval_91978 chr2 52118713 52118970 + 0 NA intron (ENSMUSG00000036202.16, intron 3 of 5) protein_coding-intron (ENSMUSG00000036202.16, intron 33 of 35) 6708 ENSMUSG00000036202.16 ENSMUSG00000036202 ENSMUST00000152178 Rif1 protein_coding Interval_101624 chr3 8033316 8033585 + 0 NA Intergenic Intergenic -78568 ENSMUSG00000100010.5 ENSMUSG00000100010 ENSMUST00000187729 1700010I02Rik lincRNA Interval_74866 chr17 56962061 56964824 + 0 NA intron (ENSMUSG00000045019.4, intron 1 of 5) protein_coding-intron (ENSMUSG00000045019.4, intron 1 of 5) 5122 ENSMUSG00000117245.1 ENSMUSG00000117245 ENSMUST00000232883 Gm49887 lincRNA Interval_138995 chr6 94092887 94093762 + 0 NA intron (ENSMUSG00000045095.16, intron 1 of 24) protein_coding-intron (ENSMUSG00000045095.16, intron 1 of 21) -180820 ENSMUSG00000045095.16 ENSMUSG00000045095 ENSMUST00000203034 Magi1 protein_coding Interval_117455 chr4 123809278 123811233 + 0 NA TTS (ENSMUSG00000043333.12) protein_coding-TTS (ENSMUSG00000043333.12) 12050 ENSMUSG00000043333.12 ENSMUSG00000043333 ENSMUST00000148797 Rhbdl2 protein_coding Interval_143250 chr7 4746462 4746867 + 0 NA TTS (ENSMUSG00000059851.15) protein_coding-TTS (ENSMUSG00000059851.15) 4814 ENSMUSG00000059851.15 ENSMUSG00000059851 ENSMUST00000128018 Kmt5c protein_coding Interval_78545 chr18 14628374 14628753 + 0 NA intron (ENSMUSG00000037013.17, intron 3 of 3) protein_coding-intron (ENSMUSG00000037013.17, intron 10 of 10) 8843 ENSMUSG00000037013.17 ENSMUSG00000037013 ENSMUST00000234544 Ss18 protein_coding Interval_13427 chr10 18133407 18133913 + 0 NA intron (ENSMUSG00000071392.6, intron 3 of 4) protein_coding-intron (ENSMUSG00000071392.6, intron 19 of 20) 13619 ENSMUSG00000071392.6 ENSMUSG00000071392 ENSMUST00000207148 Ect2l protein_coding Interval_124157 chr5 38718106 38718529 + 0 NA intron (ENSMUSG00000039315.15, intron 16 of 18) protein_coding-intron (ENSMUSG00000039315.15, intron 16 of 18) -17667 ENSMUSG00000079528.9 ENSMUSG00000079528 ENSMUST00000177682 Clnkos antisense Interval_68815 chr16 87285062 87285307 + 0 NA Intergenic Intergenic -69059 ENSMUSG00000044442.11 ENSMUSG00000044442 ENSMUST00000118115 N6amt1 protein_coding Interval_84232 chr19 8917745 8918337 + 0 NA Intergenic Intergenic -2443 ENSMUSG00000071649.6 ENSMUSG00000071649 ENSMUST00000237071 B3gat3 protein_coding Interval_108505 chr3 127789288 127791390 + 0 NA promoter-TSS (ENSMUSG00000046688.14) protein_coding-promoter-TSS (ENSMUSG00000046688.14) -465 ENSMUSG00000046688.14 ENSMUSG00000046688 ENSMUST00000171621 Tifa protein_coding Interval_338 chr1 4331916 4332824 + 0 NA intron (ENSMUSG00000025900.13, intron 3 of 29) protein_coding-intron (ENSMUSG00000025900.13, intron 3 of 29) 32459 ENSMUSG00000104123.1 ENSMUSG00000104123 ENSMUST00000194382 Gm37483 TEC Interval_124346 chr5 44271627 44272224 + 0 NA Intergenic Intergenic -45308 ENSMUSG00000046985.11 ENSMUSG00000046985 ENSMUST00000196151 Tapt1 protein_coding Interval_15475 chr10 48229081 48229440 + 0 NA Intergenic Intergenic 182407 ENSMUSG00000112062.1 ENSMUSG00000112062 ENSMUST00000219040 Gm47353 TEC Interval_113629 chr4 57119967 57121093 + 0 NA promoter-TSS (ENSMUSG00000028434.12) protein_coding-promoter-TSS (ENSMUSG00000028434.12) -49971 ENSMUSG00000028434.12 ENSMUSG00000028434 ENSMUST00000133859 Epb41l4b protein_coding Interval_35953 chr12 32709689 32710778 + 0 NA promoter-TSS (ENSMUSG00000112218.1) processed_pseudogene-promoter-TSS (ENSMUSG00000112218.1) 72 ENSMUSG00000112218.1 ENSMUSG00000112218 ENSMUST00000218175 Gm18726 processed_pseudogene Interval_34879 chr12 12911750 12912284 + 0 NA promoter-TSS (ENSMUSG00000066629.2) processed_pseudogene-promoter-TSS (ENSMUSG00000066629.2) -5 ENSMUSG00000066629.2 ENSMUSG00000066629 ENSMUST00000085720 Rpl36-ps3 processed_pseudogene Interval_158398 chr8 83428958 83429599 + 0 NA TTS (ENSMUSG00000002190.13) protein_coding-TTS (ENSMUSG00000002190.13) 8549 ENSMUSG00000063253.11 ENSMUSG00000063253 ENSMUST00000212849 Scoc protein_coding Interval_164181 chr9 32236956 32237663 + 0 NA intron (ENSMUSG00000041444.14, intron 1 of 3) protein_coding-intron (ENSMUSG00000041444.14, intron 1 of 12) 12717 ENSMUSG00000041444.14 ENSMUSG00000041444 ENSMUST00000174730 Arhgap32 protein_coding Interval_171218 chr9 115290817 115291236 + 0 NA intron (ENSMUSG00000032437.10, intron 1 of 15) protein_coding-intron (ENSMUSG00000032437.10, intron 1 of 15) -9045 ENSMUSG00000111564.1 ENSMUSG00000111564 ENSMUST00000214793 Stmn1-rs1 processed_pseudogene Interval_85288 chr19 24408718 24409937 + 0 NA intron (ENSMUSG00000024867.14, intron 3 of 3) protein_coding-intron (ENSMUSG00000024867.14, intron 3 of 14) -6682 ENSMUSG00000085003.1 ENSMUSG00000085003 ENSMUST00000126936 Pip5k1bos antisense Interval_160243 chr8 107411053 107412953 + 0 NA TTS (ENSMUSG00000003848.14) protein_coding-TTS (ENSMUSG00000003848.14) -8797 ENSMUSG00000003849.8 ENSMUSG00000003849 ENSMUST00000003947 Nqo1 protein_coding Interval_23000 chr11 18714887 18715623 + 0 NA Intergenic Intergenic -5033 ENSMUSG00000085806.1 ENSMUSG00000085806 ENSMUST00000145182 Gm12023 lincRNA Interval_123205 chr5 30617382 30617939 + 0 NA intron (ENSMUSG00000049265.7, intron 1 of 1) protein_coding-intron (ENSMUSG00000049265.7, intron 1 of 1) -3713 ENSMUSG00000049265.7 ENSMUSG00000049265 ENSMUST00000197428 Kcnk3 protein_coding Interval_49075 chr13 107746331 107746862 + 0 NA intron (ENSMUSG00000032846.10, intron 5 of 12) protein_coding-intron (ENSMUSG00000032846.10, intron 6 of 14) 59199 ENSMUSG00000102000.6 ENSMUSG00000102000 ENSMUST00000188490 1700006H21Rik lincRNA Interval_110578 chr4 4145723 4146118 + 0 NA intron (ENSMUSG00000085996.1, intron 1 of 1) processed_transcript-intron (ENSMUSG00000085996.1, intron 1 of 1) -7101 ENSMUSG00000045573.9 ENSMUSG00000045573 ENSMUST00000133567 Penk protein_coding Interval_96727 chr2 127501096 127501592 + 0 NA intron (ENSMUSG00000118630.1, intron 3 of 5) protein_coding-intron (ENSMUSG00000079056.12, intron 2 of 8) 17951 ENSMUSG00000118630.1 ENSMUSG00000118630 ENSMUST00000239264 AL731831.1 unprocessed_pseudogene Interval_55724 chr14 99320786 99321249 + 0 NA Intergenic Intergenic 21863 ENSMUSG00000005148.8 ENSMUSG00000005148 ENSMUST00000226784 Klf5 protein_coding Interval_44552 chr13 45990141 45990988 + 0 NA Intergenic Intergenic 25213 ENSMUSG00000038152.4 ENSMUSG00000038152 ENSMUST00000189843 5033430I15Rik lincRNA Interval_616 chr1 8952884 8953712 + 0 NA promoter-TSS (ENSMUSG00000025909.16) protein_coding-promoter-TSS (ENSMUSG00000025909.16) -876 ENSMUSG00000025909.16 ENSMUSG00000025909 ENSMUST00000126083 Sntg1 protein_coding Interval_88998 chr2 14167499 14168391 + 0 NA Intergenic Intergenic -6578 ENSMUSG00000061531.8 ENSMUSG00000061531 ENSMUST00000077517 Tmem236 protein_coding Interval_37312 chr12 65064622 65066102 + 0 NA exon (ENSMUSG00000020949.9, exon 2 of 3) protein_coding-exon (ENSMUSG00000020949.9, exon 2 of 3) 1080 ENSMUSG00000020949.9 ENSMUSG00000020949 ENSMUST00000221706 Fkbp3 protein_coding Interval_152285 chr7 131389747 131390597 + 0 NA TTS (ENSMUSG00000040167.16) protein_coding-TTS (ENSMUSG00000040167.16) 983 ENSMUSG00000063179.13 ENSMUSG00000063179 ENSMUST00000208084 Pstk protein_coding Interval_24951 chr11 41860416 41860617 + 0 NA intron (ENSMUSG00000087306.7, intron 3 of 8) processed_transcript-intron (ENSMUSG00000087306.7, intron 3 of 8) 56107 ENSMUSG00000020436.17 ENSMUSG00000020436 ENSMUST00000109290 Gabrg2 protein_coding Interval_55685 chr14 99032346 99033039 + 0 NA Intergenic Intergenic 13442 ENSMUSG00000033186.9 ENSMUSG00000033186 ENSMUST00000227197 Mzt1 protein_coding Interval_125028 chr5 63956388 63957129 + 0 NA intron (ENSMUSG00000047881.14, intron 1 of 7) protein_coding-intron (ENSMUSG00000047881.14, intron 1 of 7) -25844 ENSMUSG00000047881.14 ENSMUSG00000047881 ENSMUST00000127314 Rell1 protein_coding Interval_94988 chr2 102589738 102590328 + 0 NA intron (ENSMUSG00000027188.8, intron 3 of 6) protein_coding-intron (ENSMUSG00000027188.8, intron 3 of 10) 39884 ENSMUSG00000027188.8 ENSMUSG00000027188 ENSMUST00000143071 Pamr1 protein_coding Interval_31849 chr11 103339482 103341205 + 0 NA promoter-TSS (ENSMUSG00000034255.17) protein_coding-promoter-TSS (ENSMUSG00000034255.17) -4410 ENSMUSG00000085887.2 ENSMUSG00000085887 ENSMUST00000124462 Arhgap27os3 antisense Interval_23780 chr11 26166994 26167830 + 0 NA intron (ENSMUSG00000032985.15, intron 1 of 1) protein_coding-intron (ENSMUSG00000032985.15, intron 1 of 6) -34828 ENSMUSG00000099015.1 ENSMUSG00000099015 ENSMUST00000185114 Mir6372 miRNA Interval_95127 chr2 104098496 104099628 + 0 NA intron (ENSMUSG00000032679.12, intron 2 of 4) protein_coding-intron (ENSMUSG00000032679.12, intron 1 of 3) 3261 ENSMUSG00000032679.12 ENSMUSG00000032679 ENSMUST00000153312 Cd59a protein_coding Interval_46233 chr13 62815033 62816379 + 0 NA promoter-TSS (ENSMUSG00000114117.1) lincRNA-promoter-TSS (ENSMUSG00000114117.1) -183 ENSMUSG00000114117.1 ENSMUSG00000114117 ENSMUST00000221040 Gm48795 lincRNA Interval_144831 chr7 28505502 28506380 + 0 NA intron (ENSMUSG00000109336.1, intron 1 of 12) protein_coding-intron (ENSMUSG00000109336.1, intron 1 of 12) 4514 ENSMUSG00000059128.3 ENSMUSG00000059128 ENSMUST00000081684 Ifnl2 protein_coding Interval_1006 chr1 13846503 13847129 + 0 NA TTS (ENSMUSG00000102166.1) TEC-TTS (ENSMUSG00000102166.1) 2303 ENSMUSG00000102166.1 ENSMUSG00000102166 ENSMUST00000194709 Gm36947 TEC Interval_12750 chr10 4737694 4738012 + 0 NA intron (ENSMUSG00000019768.16, intron 3 of 7) protein_coding-intron (ENSMUSG00000019768.16, intron 2 of 8) 126260 ENSMUSG00000019768.16 ENSMUSG00000019768 ENSMUST00000137012 Esr1 protein_coding Interval_118349 chr4 130811707 130811920 + 0 NA promoter-TSS (ENSMUSG00000025743.14) protein_coding-promoter-TSS (ENSMUSG00000025743.14) -125 ENSMUSG00000025743.14 ENSMUSG00000025743 ENSMUST00000140623 Sdc3 protein_coding Interval_99113 chr2 157287302 157288032 + 0 NA intron (ENSMUSG00000027642.15, intron 2 of 16) protein_coding-intron (ENSMUSG00000027642.15, intron 2 of 16) 5724 ENSMUSG00000027642.15 ENSMUSG00000027642 ENSMUST00000149924 Rpn2 protein_coding Interval_56520 chr14 119831118 119832140 + 0 NA intron (ENSMUSG00000053465.6, intron 1 of 1) protein_coding-intron (ENSMUSG00000053465.6, intron 1 of 1) 32651 ENSMUSG00000115639.1 ENSMUSG00000115639 ENSMUST00000228885 4930404K13Rik sense_intronic Interval_86835 chr19 44254430 44254789 + 0 NA intron (ENSMUSG00000118217.1, intron 1 of 3) unprocessed_pseudogene-intron (ENSMUSG00000118217.1, intron 1 of 3) 2092 ENSMUSG00000118217.1 ENSMUSG00000118217 ENSMUST00000235333 Gm6951 unprocessed_pseudogene Interval_128846 chr5 115563972 115565893 + 0 NA promoter-TSS (ENSMUSG00000041638.18) protein_coding-promoter-TSS (ENSMUSG00000041638.18) -371 ENSMUSG00000041638.18 ENSMUSG00000041638 ENSMUST00000137523 Gcn1 protein_coding Interval_22260 chr11 8405347 8406143 + 0 NA Intergenic Intergenic -21892 ENSMUSG00000083553.1 ENSMUSG00000083553 ENSMUST00000117240 Gm11989 processed_pseudogene Interval_104734 chr3 69923149 69923377 + 0 NA Intergenic Intergenic 32419 ENSMUSG00000103549.1 ENSMUSG00000103549 ENSMUST00000194028 Gm17895 processed_pseudogene Interval_82264 chr18 69756206 69756475 + 0 NA Intergenic Intergenic 21705 ENSMUSG00000064706.1 ENSMUSG00000064706 ENSMUST00000082772 Gm22508 misc_RNA Interval_59658 chr15 57644133 57645425 + 0 NA Intergenic Intergenic -50950 ENSMUSG00000071757.10 ENSMUSG00000071757 ENSMUST00000160990 Zhx2 protein_coding Interval_93338 chr2 72078202 72078582 + 0 NA intron (ENSMUSG00000049044.16, intron 1 of 2) protein_coding-intron (ENSMUSG00000049044.16, intron 1 of 27) 70404 ENSMUSG00000085439.1 ENSMUSG00000085439 ENSMUST00000126462 Rapgef4os1 antisense Interval_21068 chr10 125850701 125850943 + 0 NA Intergenic Intergenic -115412 ENSMUSG00000020105.9 ENSMUSG00000020105 ENSMUST00000219974 Lrig3 protein_coding Interval_111533 chr4 22588331 22589044 + 0 NA Intergenic Intergenic -59678 ENSMUSG00000083514.1 ENSMUSG00000083514 ENSMUST00000119408 Gm11881 processed_pseudogene Interval_10271 chr1 167781872 167782949 + 0 NA intron (ENSMUSG00000026686.14, intron 3 of 8) protein_coding-intron (ENSMUSG00000026686.14, intron 2 of 7) 93173 ENSMUSG00000026686.14 ENSMUSG00000026686 ENSMUST00000028003 Lmx1a protein_coding Interval_157147 chr8 66358760 66359020 + 0 NA intron (ENSMUSG00000036469.16, intron 2 of 5) protein_coding-intron (ENSMUSG00000036469.16, intron 2 of 5) 28645 ENSMUSG00000086156.1 ENSMUSG00000086156 ENSMUST00000132019 Gm15354 antisense Interval_18020 chr10 81395095 81395854 + 0 NA TTS (ENSMUSG00000055053.18) protein_coding-TTS (ENSMUSG00000055053.18) 1820 ENSMUSG00000078439.9 ENSMUSG00000078439 ENSMUST00000129083 Smim24 protein_coding Interval_82300 chr18 70446220 70446449 + 0 NA Intergenic Intergenic -12478 ENSMUSG00000110495.1 ENSMUSG00000110495 ENSMUST00000212521 Gm45879 unitary_pseudogene Interval_167901 chr9 73935049 73935558 + 0 NA intron (ENSMUSG00000062151.13, intron 1 of 32) protein_coding-intron (ENSMUSG00000062151.13, intron 1 of 32) 33663 ENSMUSG00000062151.13 ENSMUSG00000062151 ENSMUST00000075245 Unc13c protein_coding Interval_90247 chr2 29304453 29305814 + 0 NA Intergenic Intergenic -52140 ENSMUSG00000079499.9 ENSMUSG00000079499 ENSMUST00000028141 6530402F18Rik processed_transcript Interval_96948 chr2 129815323 129815537 + 0 NA intron (ENSMUSG00000037885.18, intron 3 of 3) protein_coding-intron (ENSMUSG00000037885.18, intron 3 of 3) 14913 ENSMUSG00000037885.18 ENSMUSG00000037885 ENSMUST00000166282 Stk35 protein_coding Interval_43668 chr13 34826815 34828775 + 0 NA Intergenic Intergenic -13251 ENSMUSG00000113484.1 ENSMUSG00000113484 ENSMUST00000221289 Gm47157 lincRNA Interval_135672 chr6 43006912 43007929 + 0 NA Intergenic Intergenic 26730 ENSMUSG00000091008.1 ENSMUSG00000091008 ENSMUST00000167638 Gm17472 IG_LV_gene Interval_19563 chr10 103327142 103327450 + 0 NA Intergenic Intergenic -66154 ENSMUSG00000019894.14 ENSMUSG00000019894 ENSMUST00000219936 Slc6a15 protein_coding Interval_137202 chr6 69917567 69918259 + 0 NA Intergenic Intergenic 9989 ENSMUSG00000105451.1 ENSMUSG00000105451 ENSMUST00000199299 Gm43220 IG_V_pseudogene Interval_110210 chr3 154327828 154330537 + 0 NA promoter-TSS (ENSMUSG00000096225.7) protein_coding-promoter-TSS (ENSMUSG00000096225.7) 877 ENSMUSG00000096225.7 ENSMUSG00000096225 ENSMUST00000204403 Lhx8 protein_coding Interval_57533 chr15 12140611 12140850 + 0 NA intron (ENSMUSG00000022201.16, intron 4 of 4) protein_coding-intron (ENSMUSG00000022201.16, intron 5 of 19) 17711 ENSMUSG00000089250.1 ENSMUSG00000089250 ENSMUST00000158625 Gm25713 snRNA Interval_846 chr1 12578544 12580367 + 0 NA Intergenic Intergenic 13878 ENSMUSG00000097628.1 ENSMUSG00000097628 ENSMUST00000181461 Gm2383 processed_pseudogene Interval_25418 chr11 48047868 48048546 + 0 NA Intergenic Intergenic -135662 ENSMUSG00000065804.1 ENSMUSG00000065804 ENSMUST00000083870 Gm23039 snRNA Interval_55364 chr14 85268163 85268395 + 0 NA Intergenic Intergenic -210747 ENSMUSG00000115239.1 ENSMUSG00000115239 ENSMUST00000227214 Gm9264 processed_pseudogene Interval_81336 chr18 58247476 58247751 + 0 NA Intergenic Intergenic -16038 ENSMUSG00000089095.1 ENSMUSG00000089095 ENSMUST00000158470 Gm25660 rRNA Interval_31870 chr11 103485075 103486037 + 0 NA intron (ENSMUSG00000078632.4, intron 5 of 13) protein_coding-intron (ENSMUSG00000078632.4, intron 5 of 13) 19041 ENSMUSG00000078632.4 ENSMUSG00000078632 ENSMUST00000153273 Lrrc37a protein_coding Interval_21780 chr11 4301754 4303191 + 0 NA Intergenic Intergenic 17012 ENSMUSG00000085512.1 ENSMUSG00000085512 ENSMUST00000127224 Gm11958 lincRNA Interval_427 chr1 5158368 5159634 + 0 NA intron (ENSMUSG00000033793.12, intron 12 of 12) protein_coding-intron (ENSMUSG00000033793.12, intron 13 of 13) 75869 ENSMUSG00000033793.12 ENSMUSG00000033793 ENSMUST00000192142 Atp6v1h protein_coding Interval_34990 chr12 16497846 16498440 + 0 NA Intergenic Intergenic 112823 ENSMUSG00000020593.16 ENSMUSG00000020593 ENSMUST00000221146 Lpin1 protein_coding Interval_139680 chr6 106804975 106805511 + 0 NA Intergenic Intergenic -5166 ENSMUSG00000005362.14 ENSMUSG00000005362 ENSMUST00000204230 Crbn protein_coding Interval_34813 chr12 11610933 11611413 + 0 NA Intergenic Intergenic 55876 ENSMUSG00000111974.1 ENSMUSG00000111974 ENSMUST00000218729 Gm4803 processed_pseudogene Interval_70033 chr17 4793286 4793561 + 0 NA promoter-TSS (ENSMUSG00000116649.1) processed_pseudogene-promoter-TSS (ENSMUSG00000116649.1) -464 ENSMUSG00000116649.1 ENSMUSG00000116649 ENSMUST00000232212 Gm49780 processed_pseudogene Interval_102263 chr3 20104654 20104856 + 0 NA intron (ENSMUSG00000002428.12, intron 18 of 20) protein_coding-intron (ENSMUSG00000002428.12, intron 18 of 24) -3721 ENSMUSG00000002428.12 ENSMUSG00000002428 ENSMUST00000155635 Hltf protein_coding Interval_172777 chrX 48595868 48596788 + 0 NA Intergenic Intergenic -1824 ENSMUSG00000036916.13 ENSMUSG00000036916 ENSMUST00000150501 Zfp280c protein_coding Interval_132337 chr5 144279218 144279447 + 0 NA exon (ENSMUSG00000086894.2, exon 3 of 3) sense_intronic-exon (ENSMUSG00000086894.2, exon 3 of 3) 457 ENSMUSG00000086894.2 ENSMUSG00000086894 ENSMUST00000198873 Gm15708 sense_intronic Interval_35689 chr12 27596146 27596719 + 0 NA Intergenic Intergenic -1769 ENSMUSG00000113421.1 ENSMUSG00000113421 ENSMUST00000220893 Gm4166 lincRNA Interval_24891 chr11 40784510 40784986 + 0 NA Intergenic Intergenic -30810 ENSMUSG00000020326.7 ENSMUSG00000020326 ENSMUST00000151359 Ccng1 protein_coding Interval_98548 chr2 153147557 153148264 + 0 NA intron (ENSMUSG00000003283.15, intron 11 of 12) protein_coding-intron (ENSMUSG00000003283.15, intron 11 of 12) -7103 ENSMUSG00000089499.1 ENSMUSG00000089499 ENSMUST00000158874 Gm25643 snRNA Interval_77274 chr17 87706443 87706693 + 0 NA intron (ENSMUSG00000024151.13, intron 1 of 3) protein_coding-intron (ENSMUSG00000024151.13, intron 8 of 15) 10027 ENSMUSG00000024151.13 ENSMUSG00000024151 ENSMUST00000174703 Msh2 protein_coding Interval_151004 chr7 117566264 117566653 + 0 NA intron (ENSMUSG00000030657.11, intron 3 of 6) protein_coding-intron (ENSMUSG00000030657.11, intron 3 of 11) 90966 ENSMUSG00000030657.11 ENSMUSG00000030657 ENSMUST00000161889 Xylt1 protein_coding Interval_155226 chr8 28199746 28199933 + 0 NA Intergenic Intergenic 13999 ENSMUSG00000098056.1 ENSMUSG00000098056 ENSMUST00000182906 Gm8100 processed_pseudogene Interval_47255 chr13 79801529 79802627 + 0 NA Intergenic Intergenic -35999 ENSMUSG00000114505.1 ENSMUSG00000114505 ENSMUST00000223593 Gm48471 processed_pseudogene Interval_92560 chr2 60688968 60689440 + 0 NA intron (ENSMUSG00000026971.15, intron 1 of 1) protein_coding-intron (ENSMUSG00000026971.15, intron 1 of 17) -15478 ENSMUSG00000026971.15 ENSMUSG00000026971 ENSMUST00000142696 Itgb6 protein_coding Interval_159245 chr8 92132688 92134709 + 0 NA Intergenic Intergenic 24568 ENSMUSG00000110380.1 ENSMUSG00000110380 ENSMUST00000210508 Gm45332 lincRNA Interval_112808 chr4 45183866 45185604 + 0 NA promoter-TSS (ENSMUSG00000035615.12) protein_coding-promoter-TSS (ENSMUSG00000035615.12) -140 ENSMUSG00000035615.12 ENSMUSG00000035615 ENSMUST00000107804 Frmpd1 protein_coding Interval_133990 chr6 17482639 17482916 + 0 NA intron (ENSMUSG00000009376.15, intron 1 of 11) protein_coding-intron (ENSMUSG00000009376.15, intron 1 of 20) 46471 ENSMUSG00000093902.1 ENSMUSG00000093902 ENSMUST00000179184 Gm25021 snRNA Interval_106849 chr3 101294682 101295920 + 0 NA Intergenic Intergenic 11778 ENSMUSG00000072381.3 ENSMUSG00000072381 ENSMUST00000097146 Gm10355 processed_pseudogene Interval_22033 chr11 5896753 5898671 + 0 NA intron (ENSMUSG00000020469.8, intron 4 of 6) protein_coding-intron (ENSMUSG00000020469.8, intron 4 of 6) 1070 ENSMUSG00000020469.8 ENSMUSG00000020469 ENSMUST00000102921 Myl7 protein_coding Interval_12734 chr10 4586392 4587850 + 0 NA Intergenic Intergenic -16898 ENSMUSG00000112330.1 ENSMUSG00000112330 ENSMUST00000217832 Gm3266 processed_pseudogene Interval_152610 chr7 135176898 135177265 + 0 NA Intergenic Intergenic 18921 ENSMUSG00000100717.6 ENSMUSG00000100717 ENSMUST00000187267 1700120G07Rik lincRNA Interval_76761 chr17 83874511 83875389 + 0 NA Intergenic Intergenic -20532 ENSMUSG00000097254.2 ENSMUSG00000097254 ENSMUST00000234697 C430042M11Rik lincRNA Interval_20276 chr10 116614323 116614706 + 0 NA Intergenic Intergenic -17312 ENSMUSG00000111937.1 ENSMUSG00000111937 ENSMUST00000218130 Gm46203 processed_pseudogene Interval_67970 chr16 62208415 62208674 + 0 NA Intergenic Intergenic 111083 ENSMUSG00000116619.1 ENSMUSG00000116619 ENSMUST00000232249 Gm49615 lincRNA Interval_16931 chr10 69986199 69987675 + 0 NA promoter-TSS (ENSMUSG00000069601.14) protein_coding-promoter-TSS (ENSMUSG00000069601.14) -188074 ENSMUSG00000048701.13 ENSMUSG00000048701 ENSMUST00000135607 Ccdc6 protein_coding Interval_61079 chr15 79108204 79109898 + 0 NA promoter-TSS (ENSMUSG00000033039.10) protein_coding-promoter-TSS (ENSMUSG00000033039.10) -13994 ENSMUSG00000092974.2 ENSMUSG00000092974 ENSMUST00000175233 Gm25072 misc_RNA Interval_167030 chr9 64671426 64672491 + 0 NA intron (ENSMUSG00000036466.17, intron 10 of 24) protein_coding-intron (ENSMUSG00000036466.17, intron 10 of 24) 53762 ENSMUSG00000004771.12 ENSMUSG00000004771 ENSMUST00000165083 Rab11a protein_coding Interval_76988 chr17 85407083 85407959 + 0 NA intron (ENSMUSG00000071037.6, intron 7 of 10) protein_coding-intron (ENSMUSG00000071037.6, intron 7 of 10) -91112 ENSMUSG00000097803.1 ENSMUSG00000097803 ENSMUST00000181130 Rpl31-ps16 processed_pseudogene Interval_6100 chr1 96874509 96874997 + 0 NA intron (ENSMUSG00000097814.5, intron 3 of 3) antisense-intron (ENSMUSG00000097814.5, intron 1 of 1) 2520 ENSMUSG00000097814.5 ENSMUSG00000097814 ENSMUST00000202118 Panct2 antisense Interval_124163 chr5 38769064 38769275 + 0 NA intron (ENSMUSG00000039315.15, intron 6 of 18) protein_coding-intron (ENSMUSG00000039315.15, intron 6 of 18) 33185 ENSMUSG00000079528.9 ENSMUSG00000079528 ENSMUST00000177682 Clnkos antisense Interval_156530 chr8 49674492 49674826 + 0 NA Intergenic Intergenic -144278 ENSMUSG00000109907.1 ENSMUSG00000109907 ENSMUST00000209286 Gm45321 lincRNA Interval_90688 chr2 31901687 31902462 + 0 NA intron (ENSMUSG00000026840.14, intron 3 of 27) protein_coding-intron (ENSMUSG00000026840.14, intron 3 of 27) -9657 ENSMUSG00000086356.1 ENSMUSG00000086356 ENSMUST00000140104 Gm13441 antisense Interval_46788 chr13 70509699 70510994 + 0 NA Intergenic Intergenic -62934 ENSMUSG00000101051.6 ENSMUSG00000101051 ENSMUST00000189028 1700100L14Rik antisense Interval_19728 chr10 108343230 108343983 + 0 NA intron (ENSMUSG00000035873.8, intron 1 of 4) protein_coding-intron (ENSMUSG00000035873.8, intron 2 of 6) 10789 ENSMUSG00000035873.8 ENSMUSG00000035873 ENSMUST00000218332 Pawr protein_coding Interval_87472 chr19 52726965 52727199 + 0 NA Intergenic Intergenic -196160 ENSMUSG00000117896.1 ENSMUSG00000117896 ENSMUST00000237126 AA387883 lincRNA Interval_110527 chr4 3606614 3609150 + 0 NA intron (ENSMUSG00000028233.6, intron 1 of 1) protein_coding-intron (ENSMUSG00000028233.6, intron 12 of 12) 2245 ENSMUSG00000028233.6 ENSMUSG00000028233 ENSMUST00000146315 Tgs1 protein_coding Interval_174701 chrX 163631886 163632423 + 0 NA Intergenic Intergenic -82477 ENSMUSG00000031364.2 ENSMUSG00000031364 ENSMUST00000033730 Grpr protein_coding Interval_20937 chr10 122447445 122449802 + 0 NA exon (ENSMUSG00000020123.6, exon 1 of 2) protein_coding-exon (ENSMUSG00000020123.6, exon 1 of 2) 124 ENSMUSG00000020123.6 ENSMUSG00000020123 ENSMUST00000020323 Avpr1a protein_coding Interval_160734 chr8 111881729 111882067 + 0 NA Intergenic Intergenic 2594 ENSMUSG00000089000.1 ENSMUSG00000089000 ENSMUST00000158375 Gm23853 snRNA Interval_22713 chr11 13705019 13705488 + 0 NA Intergenic Intergenic -456826 ENSMUSG00000081631.1 ENSMUSG00000081631 ENSMUST00000121451 Gm12005 processed_pseudogene Interval_18144 chr10 82984837 82986531 + 0 NA exon (ENSMUSG00000034612.7, exon 1 of 3) protein_coding-exon (ENSMUSG00000034612.7, exon 1 of 3) 186 ENSMUSG00000034612.7 ENSMUSG00000034612 ENSMUST00000040110 Chst11 protein_coding Interval_86522 chr19 41366231 41366518 + 0 NA intron (ENSMUSG00000025017.10, intron 2 of 8) protein_coding-intron (ENSMUSG00000025017.10, intron 2 of 16) 18728 ENSMUSG00000025017.10 ENSMUSG00000025017 ENSMUST00000235978 Pik3ap1 protein_coding Interval_148107 chr7 79271953 79273664 + 0 NA promoter-TSS (ENSMUSG00000039202.12) protein_coding-promoter-TSS (ENSMUSG00000039202.12) 3 ENSMUSG00000108387.1 ENSMUSG00000108387 ENSMUST00000206434 Gm31510 bidirectional_promoter_lncRNA Interval_64276 chr16 10128939 10129771 + 0 NA Intergenic Intergenic -40871 ENSMUSG00000039209.12 ENSMUSG00000039209 ENSMUST00000044103 Rpl39l protein_coding Interval_151663 chr7 125805095 125806861 + 0 NA intron (ENSMUSG00000032743.15, intron 7 of 26) protein_coding-intron (ENSMUSG00000032743.15, intron 8 of 27) 98061 ENSMUSG00000032743.15 ENSMUSG00000032743 ENSMUST00000155059 D430042O09Rik protein_coding Interval_164660 chr9 40390758 40392820 + 0 NA exon (ENSMUSG00000040111.17, exon 1 of 20) protein_coding-exon (ENSMUSG00000040111.17, exon 1 of 20) -24887 ENSMUSG00000110928.1 ENSMUSG00000110928 ENSMUST00000214407 Gm48114 TEC Interval_171707 chr9 120355837 120356015 + 0 NA intron (ENSMUSG00000041794.13, intron 2 of 5) protein_coding-intron (ENSMUSG00000041794.13, intron 2 of 16) -28985 ENSMUSG00000082356.1 ENSMUSG00000082356 ENSMUST00000118890 Gm15565 processed_pseudogene Interval_32971 chr11 113439153 113440020 + 0 NA intron (ENSMUSG00000041654.15, intron 5 of 5) protein_coding-intron (ENSMUSG00000041654.15, intron 6 of 10) -28391 ENSMUSG00000078251.2 ENSMUSG00000078251 ENSMUST00000105048 Gm16487 pseudogene Interval_1884 chr1 34287207 34287885 + 0 NA intron (ENSMUSG00000026131.20, intron 70 of 83) protein_coding-intron (ENSMUSG00000026131.20, intron 84 of 97) -16418 ENSMUSG00000103001.1 ENSMUSG00000103001 ENSMUST00000194920 A930005N03Rik TEC Interval_125306 chr5 66090076 66090405 + 0 NA intron (ENSMUSG00000070780.11, intron 2 of 3) protein_coding-intron (ENSMUSG00000070780.11, intron 2 of 5) -5774 ENSMUSG00000107390.1 ENSMUSG00000107390 ENSMUST00000202328 Gm43323 TEC Interval_156554 chr8 51125093 51126187 + 0 NA Intergenic Intergenic -11990 ENSMUSG00000109840.1 ENSMUSG00000109840 ENSMUST00000210194 Gm45386 processed_pseudogene Interval_158832 chr8 86933792 86934578 + 0 NA Intergenic Intergenic -13038 ENSMUSG00000099162.1 ENSMUSG00000099162 ENSMUST00000183394 Gm27168 lincRNA Interval_81273 chr18 57261752 57263341 + 0 NA intron (ENSMUSG00000024593.15, intron 12 of 23) protein_coding-intron (ENSMUSG00000024593.15, intron 12 of 24) 52594 ENSMUSG00000118230.1 ENSMUSG00000118230 ENSMUST00000235284 Gm50200 processed_pseudogene Interval_168083 chr9 76037697 76038907 + 0 NA intron (ENSMUSG00000007908.14, intron 1 of 1) protein_coding-intron (ENSMUSG00000007908.14, intron 1 of 8) -23110 ENSMUSG00000097836.1 ENSMUSG00000097836 ENSMUST00000180749 Gm26903 antisense Interval_47662 chr13 90924842 90925751 + 0 NA TTS (ENSMUSG00000049517.8) protein_coding-TTS (ENSMUSG00000049517.8) 2079 ENSMUSG00000049517.8 ENSMUSG00000049517 ENSMUST00000224430 Rps23 protein_coding Interval_99174 chr2 157770672 157772300 + 0 NA intron (ENSMUSG00000027649.15, intron 1 of 15) protein_coding-intron (ENSMUSG00000027649.15, intron 1 of 15) -18378 ENSMUSG00000027649.15 ENSMUSG00000027649 ENSMUST00000156300 Ctnnbl1 protein_coding Interval_53654 chr14 60643106 60643376 + 0 NA intron (ENSMUSG00000021990.16, intron 2 of 2) protein_coding-intron (ENSMUSG00000021990.16, intron 1 of 12) -46339 ENSMUSG00000114408.1 ENSMUSG00000114408 ENSMUST00000224210 Gm47810 processed_pseudogene Interval_50801 chr14 19926964 19928317 + 0 NA intron (ENSMUSG00000043004.13, intron 3 of 5) protein_coding-intron (ENSMUSG00000043004.13, intron 3 of 5) 49544 ENSMUSG00000043004.13 ENSMUSG00000043004 ENSMUST00000161247 Gng2 protein_coding Interval_40293 chr12 103262476 103263077 + 0 NA Intergenic Intergenic -20648 ENSMUSG00000041669.15 ENSMUSG00000041669 ENSMUST00000155547 Prima1 protein_coding Interval_142340 chr6 140709514 140710021 + 0 NA Intergenic Intergenic -19517 ENSMUSG00000079264.1 ENSMUSG00000079264 ENSMUST00000111844 Gm11077 protein_coding Interval_158789 chr8 86576890 86577941 + 0 NA intron (ENSMUSG00000036872.16, intron 1 of 15) protein_coding-intron (ENSMUSG00000036872.16, intron 1 of 31) -9547 ENSMUSG00000106513.1 ENSMUSG00000106513 ENSMUST00000200165 Gm44348 miRNA Interval_14593 chr10 36795642 36795976 + 0 NA intron (ENSMUSG00000044499.11, intron 3 of 4) protein_coding-intron (ENSMUSG00000044499.11, intron 4 of 5) -19878 ENSMUSG00000088423.1 ENSMUSG00000088423 ENSMUST00000157798 Gm22554 snoRNA Interval_145574 chr7 35678886 35679291 + 0 NA Intergenic Intergenic 29477 ENSMUSG00000043671.14 ENSMUSG00000043671 ENSMUST00000124116 Dpy19l3 protein_coding Interval_65771 chr16 28516789 28518457 + 0 NA intron (ENSMUSG00000022523.10, intron 1 of 4) protein_coding-intron (ENSMUSG00000022523.10, intron 1 of 3) 82420 ENSMUSG00000076064.1 ENSMUSG00000076064 ENSMUST00000102110 Mir690 miRNA Interval_100296 chr2 168243011 168243554 + 0 NA promoter-TSS (ENSMUSG00000083342.1) processed_pseudogene-promoter-TSS (ENSMUSG00000083342.1) -852 ENSMUSG00000083342.1 ENSMUSG00000083342 ENSMUST00000122080 Gm14237 processed_pseudogene Interval_19105 chr10 94588184 94589784 + 0 NA TTS (ENSMUSG00000020023.18) protein_coding-TTS (ENSMUSG00000020023.18) -2785 ENSMUSG00000098544.1 ENSMUSG00000098544 ENSMUST00000184071 Mir7211 miRNA Interval_66496 chr16 34327934 34328289 + 0 NA intron (ENSMUSG00000061751.16, intron 6 of 30) protein_coding-intron (ENSMUSG00000061751.16, intron 6 of 59) -232083 ENSMUSG00000061751.16 ENSMUSG00000061751 ENSMUST00000132569 Kalrn protein_coding Interval_47416 chr13 83727346 83727610 + 0 NA promoter-TSS (ENSMUSG00000050334.12) lincRNA-promoter-TSS (ENSMUSG00000050334.12) 2104 ENSMUSG00000097265.1 ENSMUSG00000097265 ENSMUST00000181705 Gm26803 lincRNA Interval_136352 chr6 53685363 53685542 + 0 NA exon (ENSMUSG00000053007.9, exon 9 of 11) protein_coding-exon (ENSMUSG00000053007.9, exon 9 of 11) 17682 ENSMUSG00000108004.1 ENSMUSG00000108004 ENSMUST00000204451 Gm44080 TEC Interval_140277 chr6 115999187 115999450 + 0 NA Intergenic Intergenic -42480 ENSMUSG00000030123.15 ENSMUSG00000030123 ENSMUST00000131590 Plxnd1 protein_coding Interval_130237 chr5 125137204 125137764 + 0 NA intron (ENSMUSG00000029478.16, intron 1 of 47) protein_coding-intron (ENSMUSG00000029478.16, intron 1 of 46) 50643 ENSMUSG00000106663.1 ENSMUSG00000106663 ENSMUST00000198978 Gm42839 antisense Interval_10613 chr1 172216892 172217455 + 0 NA intron (ENSMUSG00000007122.11, intron 2 of 10) protein_coding-intron (ENSMUSG00000007122.11, intron 2 of 10) 2542 ENSMUSG00000007122.11 ENSMUSG00000007122 ENSMUST00000170700 Casq1 protein_coding Interval_72027 chr17 27628553 27630245 + 0 NA intron (ENSMUSG00000117338.1, intron 5 of 8) protein_coding-intron (ENSMUSG00000117338.1, intron 5 of 8) 5076 ENSMUSG00000052146.16 ENSMUSG00000052146 ENSMUST00000152982 Rps10 protein_coding Interval_140144 chr6 114830050 114830846 + 0 NA intron (ENSMUSG00000030314.16, intron 20 of 20) protein_coding-intron (ENSMUSG00000030314.16, intron 18 of 18) 41058 ENSMUSG00000107395.1 ENSMUSG00000107395 ENSMUST00000203217 Gm44331 processed_pseudogene Interval_2219 chr1 37121985 37122184 + 0 NA intron (ENSMUSG00000050122.19, intron 12 of 26) protein_coding-intron (ENSMUSG00000050122.19, intron 11 of 24) 11180 ENSMUSG00000103603.1 ENSMUSG00000103603 ENSMUST00000195303 Gm37020 antisense Interval_145592 chr7 35761785 35762136 + 0 NA Intergenic Intergenic 17208 ENSMUSG00000044452.10 ENSMUSG00000044452 ENSMUST00000206003 Zfp507 protein_coding Interval_150583 chr7 112627447 112627753 + 0 NA intron (ENSMUSG00000085945.3, intron 2 of 3) bidirectional_promoter_lncRNA-intron (ENSMUSG00000085945.3, intron 2 of 3) -9375 ENSMUSG00000093002.1 ENSMUSG00000093002 ENSMUST00000175261 Gm24154 snoRNA Interval_14318 chr10 30802194 30803948 + 0 NA promoter-TSS (ENSMUSG00000039697.16) protein_coding-promoter-TSS (ENSMUSG00000039697.16) -20800 ENSMUSG00000110744.1 ENSMUSG00000110744 ENSMUST00000214944 Gm5171 processed_pseudogene Interval_146144 chr7 44335416 44337746 + 0 NA intron (ENSMUSG00000038738.15, intron 1 of 4) protein_coding-intron (ENSMUSG00000038738.15, intron 13 of 22) -5554 ENSMUSG00000038738.15 ENSMUSG00000038738 ENSMUST00000127164 Shank1 protein_coding Interval_160880 chr8 114515251 114516386 + 0 NA intron (ENSMUSG00000004637.15, intron 5 of 8) protein_coding-intron (ENSMUSG00000004637.15, intron 5 of 8) 79082 ENSMUSG00000090217.1 ENSMUSG00000090217 ENSMUST00000159472 Gm16116 antisense Interval_62156 chr15 88325286 88325533 + 0 NA intron (ENSMUSG00000116331.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000116331.1, intron 1 of 2) -9777 ENSMUSG00000115880.1 ENSMUSG00000115880 ENSMUST00000230151 4930445N06Rik lincRNA Interval_102285 chr3 20551340 20552325 + 0 NA Intergenic Intergenic -45624 ENSMUSG00000102636.1 ENSMUSG00000102636 ENSMUST00000195457 Gm31466 lincRNA Interval_61306 chr15 80728997 80730049 + 0 NA intron (ENSMUSG00000047888.10, intron 1 of 24) protein_coding-intron (ENSMUSG00000047888.10, intron 1 of 24) 17252 ENSMUSG00000116480.1 ENSMUSG00000116480 ENSMUST00000230620 Gm49512 sense_intronic Interval_114179 chr4 65990309 65990893 + 0 NA intron (ENSMUSG00000028373.16, intron 5 of 21) protein_coding-intron (ENSMUSG00000028373.16, intron 6 of 22) -363248 ENSMUSG00000083080.1 ENSMUSG00000083080 ENSMUST00000119808 Gm11484 processed_pseudogene Interval_168790 chr9 87087890 87088270 + 0 NA Intergenic Intergenic -39254 ENSMUSG00000099539.1 ENSMUSG00000099539 ENSMUST00000187559 Gm8282 processed_pseudogene Interval_100044 chr2 166727839 166728845 + 0 NA Intergenic Intergenic -24748 ENSMUSG00000039621.13 ENSMUSG00000039621 ENSMUST00000140624 Prex1 protein_coding Interval_134526 chr6 29335643 29336323 + 0 NA TTS (ENSMUSG00000039742.15) protein_coding-TTS (ENSMUSG00000039742.15) -12777 ENSMUSG00000090692.1 ENSMUSG00000090692 ENSMUST00000171782 Gm17172 antisense Interval_3887 chr1 64423167 64424367 + 0 NA Intergenic Intergenic 27433 ENSMUSG00000093228.1 ENSMUSG00000093228 ENSMUST00000175487 Gm25748 miRNA Interval_101148 chr2 178507010 178507864 + 0 NA Intergenic Intergenic 46807 ENSMUSG00000039155.15 ENSMUSG00000039155 ENSMUST00000176869 Cdh26 protein_coding Interval_155516 chr8 34060488 34060932 + 0 NA Intergenic Intergenic 6088 ENSMUSG00000054618.8 ENSMUSG00000054618 ENSMUST00000149618 Gm9951 lincRNA Interval_13776 chr10 21991373 21994935 + 0 NA promoter-TSS (ENSMUSG00000019970.15) protein_coding-promoter-TSS (ENSMUSG00000019970.15) 14482 ENSMUSG00000019970.15 ENSMUSG00000019970 ENSMUST00000135195 Sgk1 protein_coding Interval_4850 chr1 80236025 80238270 + 0 NA Intergenic Intergenic 12103 ENSMUSG00000101257.1 ENSMUSG00000101257 ENSMUST00000191452 2310015K22Rik lincRNA Interval_119490 chr4 137902002 137903271 + 0 NA intron (ENSMUSG00000057530.14, intron 1 of 1) protein_coding-intron (ENSMUSG00000057530.14, intron 1 of 19) -10835 ENSMUSG00000057530.14 ENSMUSG00000057530 ENSMUST00000129607 Ece1 protein_coding Interval_158440 chr8 83737541 83741730 + 0 NA intron (ENSMUSG00000002885.14, intron 1 of 3) protein_coding-intron (ENSMUSG00000002885.14, intron 1 of 17) 1691 ENSMUSG00000002885.14 ENSMUSG00000002885 ENSMUST00000149368 Adgre5 protein_coding Interval_125902 chr5 75574310 75577325 + 0 NA intron (ENSMUSG00000005672.12, intron 1 of 20) protein_coding-intron (ENSMUSG00000005672.12, intron 1 of 20) -14667 ENSMUSG00000089078.1 ENSMUSG00000089078 ENSMUST00000158453 Gm24502 snRNA Interval_17143 chr10 72551581 72552194 + 0 NA Intergenic Intergenic 24337 ENSMUSG00000077642.1 ENSMUSG00000077642 ENSMUST00000104454 Gm24984 snoRNA Interval_152685 chr7 136250182 136250951 + 0 NA Intergenic Intergenic -17758 ENSMUSG00000110027.1 ENSMUSG00000110027 ENSMUST00000210209 C030029H02Rik lincRNA Interval_107261 chr3 105036775 105038198 + 0 NA intron (ENSMUSG00000062127.11, intron 2 of 4) protein_coding-intron (ENSMUSG00000062127.11, intron 2 of 5) 15439 ENSMUSG00000062127.11 ENSMUSG00000062127 ENSMUST00000199002 Cttnbp2nl protein_coding Interval_152676 chr7 136131031 136131242 + 0 NA Intergenic Intergenic 42160 ENSMUSG00000110396.1 ENSMUSG00000110396 ENSMUST00000209653 Gm36737 lincRNA Interval_126219 chr5 82804656 82804881 + 0 NA TTS (ENSMUSG00000089162.1) snRNA-TTS (ENSMUSG00000089162.1) 1003 ENSMUSG00000089162.1 ENSMUSG00000089162 ENSMUST00000158537 Gm24129 snRNA Interval_47013 chr13 74360731 74361056 + 0 NA TTS (ENSMUSG00000021578.17) protein_coding-TTS (ENSMUSG00000021578.17) 3112 ENSMUSG00000021579.4 ENSMUSG00000021579 ENSMUST00000022064 Lrrc14b protein_coding Interval_30489 chr11 94701421 94701743 + 0 NA intron (ENSMUSG00000056008.1, intron 1 of 1) protein_coding-intron (ENSMUSG00000056008.1, intron 1 of 1) 2917 ENSMUSG00000056008.1 ENSMUSG00000056008 ENSMUST00000069852 Gm11541 protein_coding Interval_149698 chr7 100721937 100723558 + 0 NA intron (ENSMUSG00000029461.17, intron 2 of 8) protein_coding-intron (ENSMUSG00000029461.17, intron 2 of 8) 15881 ENSMUSG00000109035.1 ENSMUSG00000109035 ENSMUST00000207122 Gm45209 processed_pseudogene Interval_41255 chr12 112177744 112177984 + 0 NA exon (ENSMUSG00000021294.7, exon 12 of 16) protein_coding-exon (ENSMUSG00000021294.7, exon 12 of 16) -1290 ENSMUSG00000021294.7 ENSMUSG00000021294 ENSMUST00000183816 Kif26a protein_coding Interval_100042 chr2 166712927 166714497 + 0 NA promoter-TSS (ENSMUSG00000039621.13) protein_coding-promoter-TSS (ENSMUSG00000039621.13) -10118 ENSMUSG00000039621.13 ENSMUSG00000039621 ENSMUST00000140624 Prex1 protein_coding Interval_118065 chr4 128727088 128728735 + 0 NA promoter-TSS (ENSMUSG00000028796.17) protein_coding-promoter-TSS (ENSMUSG00000028796.17) 17747 ENSMUSG00000028796.17 ENSMUSG00000028796 ENSMUST00000134421 Phc2 protein_coding Interval_124075 chr5 38085781 38086615 + 0 NA intron (ENSMUSG00000029125.14, intron 1 of 8) protein_coding-intron (ENSMUSG00000029125.14, intron 1 of 10) 46916 ENSMUSG00000029125.14 ENSMUSG00000029125 ENSMUST00000141286 Stx18 protein_coding Interval_14122 chr10 27760871 27761062 + 0 NA intron (ENSMUSG00000112206.1, intron 2 of 2) lincRNA-intron (ENSMUSG00000112206.1, intron 2 of 2) -17308 ENSMUSG00000112703.1 ENSMUSG00000112703 ENSMUST00000218210 Gm18041 processed_pseudogene Interval_158979 chr8 88382013 88383623 + 0 NA Intergenic Intergenic -8303 ENSMUSG00000110280.1 ENSMUSG00000110280 ENSMUST00000211701 Gm45497 processed_pseudogene Interval_30165 chr11 90031693 90031986 + 0 NA intron (ENSMUSG00000069763.3, intron 1 of 2) protein_coding-intron (ENSMUSG00000069763.3, intron 1 of 2) 1491 ENSMUSG00000069763.3 ENSMUSG00000069763 ENSMUST00000092788 Tmem100 protein_coding Interval_158026 chr8 78124057 78124546 + 0 NA Intergenic Intergenic 16341 ENSMUSG00000109948.1 ENSMUSG00000109948 ENSMUST00000210236 Gm45288 processed_pseudogene Interval_115962 chr4 106621766 106622987 + 0 NA promoter-TSS (ENSMUSG00000034919.2) protein_coding-promoter-TSS (ENSMUSG00000034919.2) -5138 ENSMUSG00000054362.9 ENSMUSG00000054362 ENSMUST00000106788 Lexm protein_coding Interval_49750 chr13 114460335 114460874 + 0 NA intron (ENSMUSG00000114935.1, intron 1 of 2) antisense-intron (ENSMUSG00000114935.1, intron 1 of 2) 1941 ENSMUSG00000114935.1 ENSMUSG00000114935 ENSMUST00000225706 Gm47040 antisense Interval_94390 chr2 90687064 90687311 + 0 NA intron (ENSMUSG00000051329.13, intron 1 of 3) protein_coding-intron (ENSMUSG00000051329.13, intron 5 of 36) 2016 ENSMUSG00000051329.13 ENSMUSG00000051329 ENSMUST00000126503 Nup160 protein_coding Interval_59118 chr15 44346016 44346271 + 0 NA TTS (ENSMUSG00000088756.1) snoRNA-TTS (ENSMUSG00000088756.1) 493 ENSMUSG00000088756.1 ENSMUSG00000088756 ENSMUST00000158131 Gm24903 snoRNA Interval_96720 chr2 127434529 127435563 + 0 NA exon (ENSMUSG00000046338.4, exon 19 of 22) protein_coding-exon (ENSMUSG00000046338.4, exon 19 of 22) 9519 ENSMUSG00000027371.10 ENSMUSG00000027371 ENSMUST00000137502 Fahd2a protein_coding Interval_132038 chr5 142431010 142431349 + 0 NA intron (ENSMUSG00000056493.9, intron 1 of 8) protein_coding-intron (ENSMUSG00000056493.9, intron 1 of 8) 29682 ENSMUSG00000056493.9 ENSMUSG00000056493 ENSMUST00000072837 Foxk1 protein_coding Interval_120024 chr4 141411367 141412048 + 0 NA TTS (ENSMUSG00000086061.7) antisense-TTS (ENSMUSG00000086061.7) 4254 ENSMUSG00000006216.10 ENSMUSG00000006216 ENSMUST00000145725 Clcnkb protein_coding Interval_119470 chr4 137777314 137779500 + 0 NA intron (ENSMUSG00000028766.10, intron 1 of 11) protein_coding-intron (ENSMUSG00000028766.10, intron 1 of 11) 3784 ENSMUSG00000028766.10 ENSMUSG00000028766 ENSMUST00000143757 Alpl protein_coding Interval_106480 chr3 96609976 96610232 + 0 NA intron (ENSMUSG00000045327.7, intron 2 of 2) transcribed_processed_pseudogene-intron (ENSMUSG00000045327.7, intron 1 of 1) -8197 ENSMUSG00000049288.4 ENSMUSG00000049288 ENSMUST00000199166 Lix1l protein_coding Interval_116219 chr4 108811276 108812176 + 0 NA Intergenic Intergenic 18825 ENSMUSG00000028568.16 ENSMUSG00000028568 ENSMUST00000139464 Btf3l4 protein_coding Interval_132972 chr5 149031083 149032102 + 0 NA Intergenic Intergenic -15779 ENSMUSG00000085971.4 ENSMUSG00000085971 ENSMUST00000202128 Gm15411 processed_transcript Interval_89566 chr2 22879648 22880443 + 0 NA Intergenic Intergenic -15550 ENSMUSG00000026784.14 ENSMUSG00000026784 ENSMUST00000149229 Pdss1 protein_coding Interval_154552 chr8 19363635 19364480 + 0 NA Intergenic Intergenic -58449 ENSMUSG00000082710.1 ENSMUSG00000082710 ENSMUST00000121373 Defa-ps14 unprocessed_pseudogene Interval_46094 chr13 61641059 61641278 + 0 NA Intergenic Intergenic -14135 ENSMUSG00000113295.1 ENSMUSG00000113295 ENSMUST00000222397 Gm49357 lincRNA Interval_78753 chr18 20302087 20302759 + 0 NA Intergenic Intergenic -8388 ENSMUSG00000069441.3 ENSMUSG00000069441 ENSMUST00000077146 Dsg1a protein_coding Interval_163665 chr9 23589110 23589497 + 0 NA Intergenic Intergenic -187189 ENSMUSG00000111041.1 ENSMUSG00000111041 ENSMUST00000215669 Gm3011 processed_pseudogene Interval_51523 chr14 29721195 29723365 + 0 NA promoter-TSS (ENSMUSG00000021991.9) protein_coding-promoter-TSS (ENSMUSG00000021991.9) 11115 ENSMUSG00000114570.1 ENSMUSG00000114570 ENSMUST00000225976 Gm48058 lincRNA Interval_59309 chr15 51104383 51105724 + 0 NA Intergenic Intergenic 207414 ENSMUSG00000115339.1 ENSMUSG00000115339 ENSMUST00000226611 Gm48913 lincRNA Interval_58000 chr15 25933018 25933772 + 0 NA promoter-TSS (ENSMUSG00000022270.16) protein_coding-promoter-TSS (ENSMUSG00000022270.16) -14832 ENSMUSG00000098719.1 ENSMUSG00000098719 ENSMUST00000184098 Mir7212 miRNA Interval_88476 chr2 5451435 5451880 + 0 NA intron (ENSMUSG00000039145.16, intron 2 of 2) protein_coding-intron (ENSMUSG00000039145.16, intron 2 of 10) -151914 ENSMUSG00000082013.1 ENSMUSG00000082013 ENSMUST00000117145 Gm13216 processed_pseudogene Interval_115941 chr4 106446816 106447426 + 0 NA intron (ENSMUSG00000044254.6, intron 9 of 11) protein_coding-intron (ENSMUSG00000044254.6, intron 9 of 11) 17208 ENSMUSG00000044254.6 ENSMUSG00000044254 ENSMUST00000049507 Pcsk9 protein_coding Interval_102794 chr3 31077711 31078390 + 0 NA Intergenic Intergenic -17011 ENSMUSG00000027660.16 ENSMUSG00000027660 ENSMUST00000118204 Skil protein_coding Interval_47065 chr13 75089709 75091057 + 0 NA intron (ENSMUSG00000021587.5, intron 1 of 5) protein_coding-intron (ENSMUSG00000021587.5, intron 1 of 13) -20435 ENSMUSG00000021587.5 ENSMUSG00000021587 ENSMUST00000222727 Pcsk1 protein_coding Interval_95101 chr2 103893802 103895620 + 0 NA Intergenic Intergenic 6387 ENSMUSG00000083643.1 ENSMUSG00000083643 ENSMUST00000118451 Gm13876 processed_pseudogene Interval_70024 chr17 4682795 4683994 + 0 NA Intergenic Intergenic 5374 ENSMUSG00000096200.1 ENSMUSG00000096200 ENSMUST00000180078 Gm23186 snRNA Interval_79198 chr18 25600194 25601118 + 0 NA intron (ENSMUSG00000114306.1, intron 1 of 1) protein_coding-intron (ENSMUSG00000024268.16, intron 2 of 12) -2202 ENSMUSG00000084537.1 ENSMUSG00000084537 ENSMUST00000122588 Gm25845 misc_RNA Interval_86895 chr19 44683073 44684722 + 0 NA Intergenic Intergenic 11563 ENSMUSG00000097683.2 ENSMUSG00000097683 ENSMUST00000181365 Gm26644 lincRNA Interval_24753 chr11 36687895 36688446 + 0 NA intron (ENSMUSG00000049336.16, intron 2 of 28) protein_coding-intron (ENSMUSG00000049336.16, intron 2 of 28) -34712 ENSMUSG00000065173.1 ENSMUSG00000065173 ENSMUST00000083239 Gm22127 snRNA Interval_118337 chr4 130752749 130753188 + 0 NA intron (ENSMUSG00000028580.15, intron 11 of 19) protein_coding-intron (ENSMUSG00000028580.15, intron 13 of 21) 3334 ENSMUSG00000065196.1 ENSMUSG00000065196 ENSMUST00000083262 Snord85 snoRNA Interval_131334 chr5 136539335 136539766 + 0 NA intron (ENSMUSG00000029705.17, intron 1 of 1) protein_coding-intron (ENSMUSG00000029705.17, intron 1 of 23) -3073 ENSMUSG00000104369.1 ENSMUSG00000104369 ENSMUST00000192800 Gm38082 TEC Interval_4352 chr1 72879427 72880975 + 0 NA Intergenic Intergenic -5926 ENSMUSG00000026185.8 ENSMUSG00000026185 ENSMUST00000137339 Igfbp5 protein_coding Interval_59374 chr15 51970380 51970601 + 0 NA intron (ENSMUSG00000022314.10, intron 8 of 13) protein_coding-intron (ENSMUSG00000022314.10, intron 8 of 13) 21020 ENSMUSG00000022314.10 ENSMUSG00000022314 ENSMUST00000226529 Rad21 protein_coding Interval_118192 chr4 129450980 129451862 + 0 NA Intergenic Intergenic -6930 ENSMUSG00000064613.1 ENSMUSG00000064613 ENSMUST00000082679 Gm24621 snRNA Interval_4069 chr1 67259238 67259575 + 0 NA intron (ENSMUSG00000086204.1, intron 3 of 4) lincRNA-intron (ENSMUSG00000086204.1, intron 3 of 4) 2182 ENSMUSG00000077745.1 ENSMUSG00000077745 ENSMUST00000104557 Gm26342 snoRNA Interval_142767 chr6 145467624 145468230 + 0 NA intron (ENSMUSG00000054966.13, intron 2 of 10) protein_coding-intron (ENSMUSG00000054966.13, intron 2 of 10) 3738 ENSMUSG00000088781.1 ENSMUSG00000088781 ENSMUST00000158156 Gm25373 snoRNA Interval_59927 chr15 62012375 62013084 + 0 NA Intergenic Intergenic -25300 ENSMUSG00000098998.1 ENSMUSG00000098998 ENSMUST00000184473 Gm27913 misc_RNA Interval_25796 chr11 51780374 51781117 + 0 NA intron (ENSMUSG00000020386.5, intron 3 of 6) protein_coding-intron (ENSMUSG00000020386.5, intron 3 of 6) 17051 ENSMUSG00000020386.5 ENSMUSG00000020386 ENSMUST00000136363 Sar1b protein_coding Interval_169836 chr9 102386885 102387199 + 0 NA Intergenic Intergenic 13924 ENSMUSG00000088138.1 ENSMUSG00000088138 ENSMUST00000157513 Gm22894 snRNA Interval_139682 chr6 106847361 106847740 + 0 NA Intergenic Intergenic -47473 ENSMUSG00000005362.14 ENSMUSG00000005362 ENSMUST00000204230 Crbn protein_coding Interval_80018 chr18 36669838 36670838 + 0 NA promoter-TSS (ENSMUSG00000006050.12) protein_coding-promoter-TSS (ENSMUSG00000006050.12) -48 ENSMUSG00000006050.12 ENSMUSG00000006050 ENSMUST00000174125 Sra1 protein_coding Interval_51259 chr14 25585501 25586059 + 0 NA intron (ENSMUSG00000007817.15, intron 6 of 23) protein_coding-intron (ENSMUSG00000007817.15, intron 6 of 23) 51341 ENSMUSG00000093081.1 ENSMUSG00000093081 ENSMUST00000175340 Mir3075 miRNA Interval_15650 chr10 52950808 52951601 + 0 NA intron (ENSMUSG00000038602.7, intron 2 of 7) protein_coding-intron (ENSMUSG00000038602.7, intron 2 of 7) 45566 ENSMUSG00000088322.1 ENSMUSG00000088322 ENSMUST00000157697 Gm25664 snRNA Interval_86470 chr19 40841755 40843096 + 0 NA intron (ENSMUSG00000025010.14, intron 2 of 4) protein_coding-intron (ENSMUSG00000025010.14, intron 3 of 5) 11117 ENSMUSG00000025010.14 ENSMUSG00000025010 ENSMUST00000119316 Ccnj protein_coding Interval_84185 chr19 8587349 8587560 + 0 NA TTS (ENSMUSG00000086174.1) processed_pseudogene-TTS (ENSMUSG00000086174.1) 1742 ENSMUSG00000086174.1 ENSMUSG00000086174 ENSMUST00000136332 Gm6425 processed_pseudogene Interval_61210 chr15 79985760 79987011 + 0 NA Intergenic Intergenic 12641 ENSMUSG00000099222.1 ENSMUSG00000099222 ENSMUST00000183847 Mir7213 miRNA Interval_146943 chr7 56100245 56100445 + 0 NA exon (ENSMUSG00000030451.16, exon 14 of 93) protein_coding-exon (ENSMUSG00000030451.16, exon 14 of 93) 32361 ENSMUSG00000030451.16 ENSMUSG00000030451 ENSMUST00000205678 Herc2 protein_coding Interval_3974 chr1 65213230 65213534 + 0 NA intron (ENSMUSG00000025949.16, intron 3 of 3) protein_coding-intron (ENSMUSG00000025949.16, intron 8 of 41) 26678 ENSMUSG00000025949.16 ENSMUSG00000025949 ENSMUST00000190847 Pikfyve protein_coding Interval_33781 chr11 118462951 118463407 + 0 NA Intergenic Intergenic -8184 ENSMUSG00000086514.1 ENSMUSG00000086514 ENSMUST00000142751 Gm11747 antisense Interval_144922 chr7 28936680 28937546 + 0 NA intron (ENSMUSG00000109314.1, intron 1 of 1) protein_coding-intron (ENSMUSG00000054808.15, intron 1 of 20) 6415 ENSMUSG00000109314.1 ENSMUSG00000109314 ENSMUST00000208229 Gm44699 sense_intronic Interval_152970 chr7 140137156 140138366 + 0 NA promoter-TSS (ENSMUSG00000039018.15) protein_coding-promoter-TSS (ENSMUSG00000039018.15) 76 ENSMUSG00000039018.15 ENSMUSG00000039018 ENSMUST00000155723 Mtg1 protein_coding Interval_32447 chr11 107585592 107586248 + 0 NA intron (ENSMUSG00000020721.16, intron 5 of 32) protein_coding-intron (ENSMUSG00000020721.16, intron 4 of 31) -37547 ENSMUSG00000059706.4 ENSMUSG00000059706 ENSMUST00000147445 A830035A12Rik processed_transcript Interval_127280 chr5 102076080 102076327 + 0 NA Intergenic Intergenic 5985 ENSMUSG00000106492.1 ENSMUSG00000106492 ENSMUST00000196325 Gm29707 lincRNA Interval_55417 chr14 86994822 86995012 + 0 NA intron (ENSMUSG00000022021.14, intron 8 of 15) protein_coding-intron (ENSMUSG00000022021.14, intron 9 of 27) -74206 ENSMUSG00000077948.2 ENSMUSG00000077948 ENSMUST00000104755 Gm23438 miRNA Interval_104529 chr3 67463240 67464457 + 0 NA promoter-TSS (ENSMUSG00000047557.2) protein_coding-promoter-TSS (ENSMUSG00000047557.2) -2214 ENSMUSG00000047557.2 ENSMUSG00000047557 ENSMUST00000160202 Lxn protein_coding Interval_164421 chr9 36903803 36904100 + 0 NA intron (ENSMUSG00000035934.16, intron 8 of 10) protein_coding-intron (ENSMUSG00000035934.16, intron 10 of 12) 71143 ENSMUSG00000032118.16 ENSMUSG00000032118 ENSMUST00000161978 Fez1 protein_coding Interval_110626 chr4 5045166 5045554 + 0 NA Intergenic Intergenic -66486 ENSMUSG00000083228.1 ENSMUSG00000083228 ENSMUST00000118541 Gm11779 processed_pseudogene Interval_128996 chr5 116526492 116526830 + 0 NA intron (ENSMUSG00000063919.11, intron 1 of 12) protein_coding-intron (ENSMUSG00000063919.11, intron 1 of 12) -23945 ENSMUSG00000107172.1 ENSMUSG00000107172 ENSMUST00000200924 4933430H06Rik TEC Interval_131902 chr5 140701685 140702413 + 0 NA promoter-TSS (ENSMUSG00000036555.14) protein_coding-promoter-TSS (ENSMUSG00000036555.14) 227 ENSMUSG00000036555.14 ENSMUSG00000036555 ENSMUST00000139382 Iqce protein_coding Interval_23833 chr11 26806133 26807058 + 0 NA Intergenic Intergenic 19962 ENSMUSG00000069939.8 ENSMUSG00000069939 ENSMUST00000119551 Gm12070 processed_pseudogene Interval_100859 chr2 172959094 172959495 + 0 NA Intergenic Intergenic -19202 ENSMUSG00000008999.7 ENSMUSG00000008999 ENSMUST00000137247 Bmp7 protein_coding Interval_72682 chr17 31529226 31529821 + 0 NA TTS (ENSMUSG00000024038.17) protein_coding-TTS (ENSMUSG00000024038.17) 5937 ENSMUSG00000104159.1 ENSMUSG00000104159 ENSMUST00000193280 Gm38099 TEC Interval_6302 chr1 105712635 105713557 + 0 NA TTS (ENSMUSG00000104044.1) TEC-TTS (ENSMUSG00000104044.1) 4523 ENSMUSG00000104044.1 ENSMUSG00000104044 ENSMUST00000192363 Gm37566 TEC Interval_121652 chr5 4364814 4365064 + 0 NA Intergenic Intergenic 172572 ENSMUSG00000053178.5 ENSMUSG00000053178 ENSMUST00000177258 Mterf1b protein_coding Interval_130127 chr5 124439393 124440495 + 0 NA promoter-TSS (ENSMUSG00000049327.17) protein_coding-promoter-TSS (ENSMUSG00000049327.17) -23 ENSMUSG00000049327.17 ENSMUSG00000049327 ENSMUST00000125588 Kmt5a protein_coding Interval_149006 chr7 91601173 91601378 + 0 NA intron (ENSMUSG00000052572.19, intron 1 of 3) protein_coding-intron (ENSMUSG00000052572.19, intron 2 of 22) -7681 ENSMUSG00000109217.1 ENSMUSG00000109217 ENSMUST00000208520 Gm44676 TEC Interval_23622 chr11 23910522 23910849 + 0 NA Intergenic Intergenic 16125 ENSMUSG00000084769.1 ENSMUSG00000084769 ENSMUST00000151881 Gm12061 antisense Interval_102420 chr3 25149455 25149665 + 0 NA Intergenic Intergenic -5299 ENSMUSG00000102758.3 ENSMUSG00000102758 ENSMUST00000204227 Naaladl2 protein_coding Interval_33959 chr11 119661231 119662388 + 0 NA intron (ENSMUSG00000025583.15, intron 2 of 32) protein_coding-intron (ENSMUSG00000025583.15, intron 2 of 33) -15179 ENSMUSG00000083870.1 ENSMUSG00000083870 ENSMUST00000121392 Gm11761 processed_pseudogene Interval_89056 chr2 15080355 15081204 + 0 NA exon (ENSMUSG00000017418.14, exon 6 of 6) protein_coding-exon (ENSMUSG00000017418.14, exon 6 of 6) 24066 ENSMUSG00000102258.1 ENSMUSG00000102258 ENSMUST00000195881 Gm38257 TEC Interval_168622 chr9 84343542 84344149 + 0 NA Intergenic Intergenic 42710 ENSMUSG00000111616.1 ENSMUSG00000111616 ENSMUST00000215826 Gm18487 processed_pseudogene Interval_147517 chr7 67971470 67972187 + 0 NA intron (ENSMUSG00000005533.10, intron 1 of 20) protein_coding-intron (ENSMUSG00000005533.10, intron 1 of 20) -85243 ENSMUSG00000109152.1 ENSMUSG00000109152 ENSMUST00000208544 Gm44666 processed_pseudogene Interval_30869 chr11 96982310 96982626 + 0 NA intron (ENSMUSG00000018678.13, intron 1 of 7) protein_coding-intron (ENSMUSG00000018678.13, intron 1 of 7) -4757 ENSMUSG00000018678.13 ENSMUSG00000018678 ENSMUST00000062652 Sp2 protein_coding Interval_64782 chr16 15666680 15667024 + 0 NA intron (ENSMUSG00000022672.8, intron 12 of 21) protein_coding-intron (ENSMUSG00000022672.8, intron 12 of 85) 28986 ENSMUSG00000022672.8 ENSMUSG00000022672 ENSMUST00000023352 Prkdc protein_coding Interval_19674 chr10 107734418 107735186 + 0 NA Intergenic Intergenic -14775 ENSMUSG00000035916.8 ENSMUSG00000035916 ENSMUST00000218399 Ptprq protein_coding Interval_120213 chr4 144322910 144323465 + 0 NA Intergenic Intergenic -7062 ENSMUSG00000078508.1 ENSMUSG00000078508 ENSMUST00000105751 Gm13128 protein_coding Interval_34161 chr11 121000958 121001667 + 0 NA Intergenic Intergenic 2472 ENSMUSG00000081686.1 ENSMUSG00000081686 ENSMUST00000118601 Gm11774 processed_pseudogene Interval_91628 chr2 44979403 44979674 + 0 NA Intergenic Intergenic 43639 ENSMUSG00000092679.1 ENSMUSG00000092679 ENSMUST00000174938 Mir5129 miRNA Interval_118773 chr4 133632081 133633870 + 0 NA intron (ENSMUSG00000037553.14, intron 1 of 1) protein_coding-intron (ENSMUSG00000037553.14, intron 1 of 7) 5708 ENSMUSG00000083885.1 ENSMUSG00000083885 ENSMUST00000119668 Gm13213 processed_pseudogene Interval_163693 chr9 24477888 24478276 + 0 NA intron (ENSMUSG00000043067.15, intron 4 of 22) protein_coding-intron (ENSMUSG00000043067.15, intron 4 of 22) 25058 ENSMUSG00000043067.15 ENSMUSG00000043067 ENSMUST00000129048 Dpy19l1 protein_coding Interval_32671 chr11 109560435 109561341 + 0 NA intron (ENSMUSG00000020604.13, intron 10 of 11) protein_coding-intron (ENSMUSG00000020604.13, intron 12 of 13) 51079 ENSMUSG00000041895.15 ENSMUSG00000041895 ENSMUST00000153738 Wipi1 protein_coding Interval_78764 chr18 20497069 20497749 + 0 NA Intergenic Intergenic -1906 ENSMUSG00000117480.1 ENSMUSG00000117480 ENSMUST00000234005 Gm5688 processed_pseudogene Interval_59715 chr15 58853441 58853797 + 0 NA Intergenic Intergenic -6298 ENSMUSG00000061490.6 ENSMUSG00000061490 ENSMUST00000075109 Ube2d4 processed_pseudogene Interval_127217 chr5 101518736 101519780 + 0 NA Intergenic Intergenic -12929 ENSMUSG00000106610.1 ENSMUSG00000106610 ENSMUST00000199021 Gm43103 processed_pseudogene Interval_18063 chr10 82000390 82001068 + 0 NA Intergenic Intergenic -7650 ENSMUSG00000111985.1 ENSMUSG00000111985 ENSMUST00000218202 Gm8290 processed_pseudogene Interval_70420 chr17 10037914 10038536 + 0 NA Intergenic Intergenic 90388 ENSMUSG00000117206.1 ENSMUSG00000117206 ENSMUST00000233132 Gm49809 processed_pseudogene Interval_16050 chr10 60323261 60323681 + 0 NA exon (ENSMUSG00000012819.15, exon 45 of 67) protein_coding-exon (ENSMUSG00000012819.15, exon 45 of 67) -17822 ENSMUSG00000012819.15 ENSMUSG00000012819 ENSMUST00000123309 Cdh23 protein_coding Interval_63147 chr15 99380412 99381677 + 0 NA Intergenic Intergenic -12909 ENSMUSG00000095635.1 ENSMUSG00000095635 ENSMUST00000179471 Gm22951 snRNA Interval_51464 chr14 27741323 27742081 + 0 NA intron (ENSMUSG00000040640.11, intron 1 of 7) protein_coding-intron (ENSMUSG00000040640.11, intron 2 of 15) 27325 ENSMUSG00000114653.1 ENSMUSG00000114653 ENSMUST00000224481 Gm18398 processed_pseudogene Interval_160010 chr8 105725494 105726145 + 0 NA intron (ENSMUSG00000013150.15, intron 2 of 3) protein_coding-intron (ENSMUSG00000013150.15, intron 2 of 2) -17674 ENSMUSG00000013155.10 ENSMUSG00000013155 ENSMUST00000013299 Enkd1 protein_coding Interval_113258 chr4 52477174 52477465 + 0 NA intron (ENSMUSG00000028312.19, intron 21 of 24) protein_coding-intron (ENSMUSG00000028312.19, intron 21 of 24) 19925 ENSMUSG00000061619.3 ENSMUSG00000061619 ENSMUST00000114578 Vma21-ps processed_pseudogene Interval_87738 chr19 55542340 55543533 + 0 NA intron (ENSMUSG00000024983.10, intron 8 of 8) protein_coding-intron (ENSMUSG00000024983.10, intron 7 of 7) -199328 ENSMUSG00000024985.20 ENSMUSG00000024985 ENSMUST00000148666 Tcf7l2 protein_coding Interval_114069 chr4 62976836 62977755 + 0 NA intron (ENSMUSG00000028358.15, intron 1 of 14) protein_coding-intron (ENSMUSG00000028358.15, intron 1 of 11) 37383 ENSMUSG00000083635.1 ENSMUSG00000083635 ENSMUST00000120214 Gm11480 processed_pseudogene Interval_89067 chr2 15358830 15359091 + 0 NA Intergenic Intergenic 16335 ENSMUSG00000080930.2 ENSMUSG00000080930 ENSMUST00000119955 Gm13367 processed_pseudogene Interval_137320 chr6 71302193 71302710 + 0 NA exon (ENSMUSG00000073018.6, exon 2 of 2) transcribed_unprocessed_pseudogene-exon (ENSMUSG00000073018.6, exon 2 of 2) 2326 ENSMUSG00000073018.6 ENSMUSG00000073018 ENSMUST00000238902 Gm1070 transcribed_unprocessed_pseudogene Interval_135711 chr6 44203970 44205195 + 0 NA Intergenic Intergenic -121227 ENSMUSG00000107598.1 ENSMUSG00000107598 ENSMUST00000203777 Gm35216 lincRNA Interval_100677 chr2 171252725 171253319 + 0 NA promoter-TSS (ENSMUSG00000084829.7) lincRNA-promoter-TSS (ENSMUSG00000084829.7) -262 ENSMUSG00000084829.7 ENSMUSG00000084829 ENSMUST00000146542 Gm14266 lincRNA Interval_75526 chr17 67779078 67780641 + 0 NA intron (ENSMUSG00000032796.8, intron 30 of 62) protein_coding-intron (ENSMUSG00000032796.8, intron 30 of 62) 71204 ENSMUSG00000090955.1 ENSMUSG00000090955 ENSMUST00000166414 Gm17097 processed_pseudogene Interval_81537 chr18 61544321 61545343 + 0 NA Intergenic Intergenic -8257 ENSMUSG00000045094.8 ENSMUSG00000045094 ENSMUST00000237557 Arhgef37 protein_coding Interval_125845 chr5 74952797 74953891 + 0 NA intron (ENSMUSG00000072874.4, intron 1 of 4) lincRNA-intron (ENSMUSG00000072874.4, intron 1 of 4) 4154 ENSMUSG00000072874.4 ENSMUSG00000072874 ENSMUST00000101121 Gm6116 lincRNA Interval_169454 chr9 97498597 97498878 + 0 NA intron (ENSMUSG00000032452.12, intron 8 of 16) protein_coding-intron (ENSMUSG00000032452.12, intron 8 of 17) -59110 ENSMUSG00000077208.1 ENSMUSG00000077208 ENSMUST00000104020 Gm25607 snoRNA Interval_159467 chr8 94901359 94901571 + 0 NA Intergenic Intergenic 16056 ENSMUSG00000063605.5 ENSMUSG00000063605 ENSMUST00000162020 Ccdc102a protein_coding Interval_113034 chr4 47111042 47112409 + 0 NA intron (ENSMUSG00000039774.12, intron 3 of 8) protein_coding-intron (ENSMUSG00000039774.12, intron 4 of 9) 10693 ENSMUSG00000094286.1 ENSMUSG00000094286 ENSMUST00000179673 Gm12424 processed_pseudogene Interval_14255 chr10 29850802 29851758 + 0 NA Intergenic Intergenic 69869 ENSMUSG00000111427.1 ENSMUSG00000111427 ENSMUST00000215034 Gm6390 processed_pseudogene Interval_71056 chr17 17529718 17529982 + 0 NA exon (ENSMUSG00000023845.7, exon 18 of 18) protein_coding-exon (ENSMUSG00000023845.7, exon 18 of 18) 29507 ENSMUSG00000116532.1 ENSMUSG00000116532 ENSMUST00000232178 Gm5232 processed_pseudogene Interval_38847 chr12 83328750 83329353 + 0 NA intron (ENSMUSG00000021221.15, intron 4 of 10) protein_coding-intron (ENSMUSG00000021221.15, intron 2 of 6) 158665 ENSMUSG00000021221.15 ENSMUSG00000021221 ENSMUST00000177801 Dpf3 protein_coding Interval_104893 chr3 78638352 78638631 + 0 NA Intergenic Intergenic -120128 ENSMUSG00000102341.1 ENSMUSG00000102341 ENSMUST00000194471 Gm18952 processed_pseudogene Interval_23033 chr11 19109888 19110333 + 0 NA Intergenic Intergenic 7324 ENSMUSG00000102585.1 ENSMUSG00000102585 ENSMUST00000193150 Gm37439 TEC Interval_44325 chr13 43660744 43661479 + 0 NA intron (ENSMUSG00000044164.2, intron 1 of 1) protein_coding-intron (ENSMUSG00000044164.2, intron 1 of 1) -22009 ENSMUSG00000114121.1 ENSMUSG00000114121 ENSMUST00000222349 Gm47728 lincRNA Interval_56391 chr14 118385341 118386210 + 0 NA intron (ENSMUSG00000099911.1, intron 3 of 5) lincRNA-intron (ENSMUSG00000099911.1, intron 3 of 5) -9581 ENSMUSG00000115515.1 ENSMUSG00000115515 ENSMUST00000226188 Gm5672 processed_pseudogene Interval_60657 chr15 75981141 75982572 + 0 NA exon (ENSMUSG00000098176.2, exon 1 of 1) protein_coding-exon (ENSMUSG00000098176.2, exon 1 of 1) 586 ENSMUSG00000098176.2 ENSMUSG00000098176 ENSMUST00000182172 Ccdc166 protein_coding Interval_131089 chr5 135023079 135024100 + 0 NA promoter-TSS (ENSMUSG00000007207.10) protein_coding-promoter-TSS (ENSMUSG00000007207.10) 82 ENSMUSG00000007207.10 ENSMUSG00000007207 ENSMUST00000144198 Stx1a protein_coding Interval_102472 chr3 27081891 27082149 + 0 NA Intergenic Intergenic -26962 ENSMUSG00000087742.1 ENSMUSG00000087742 ENSMUST00000157117 Gm25152 snoRNA Interval_63046 chr15 98803233 98804349 + 0 NA TTS (ENSMUSG00000059213.7) protein_coding-TTS (ENSMUSG00000059213.7) 5699 ENSMUSG00000059213.7 ENSMUSG00000059213 ENSMUST00000230409 Ddn protein_coding Interval_110993 chr4 11081644 11083306 + 0 NA Intergenic Intergenic -6292 ENSMUSG00000050323.14 ENSMUSG00000050323 ENSMUST00000141019 Ndufaf6 protein_coding Interval_131886 chr5 140594060 140595227 + 0 NA Intergenic Intergenic 11908 ENSMUSG00000105699.1 ENSMUSG00000105699 ENSMUST00000200523 Gm43703 lincRNA Interval_141475 chr6 128478500 128480532 + 0 NA intron (ENSMUSG00000059659.7, intron 1 of 1) antisense-intron (ENSMUSG00000059659.7, intron 1 of 1) -6128 ENSMUSG00000107896.1 ENSMUSG00000107896 ENSMUST00000203602 Gm8719 processed_pseudogene Interval_96044 chr2 119406793 119407321 + 0 NA intron (ENSMUSG00000034154.15, intron 26 of 27) protein_coding-intron (ENSMUSG00000034154.15, intron 26 of 35) 32623 ENSMUSG00000034154.15 ENSMUSG00000034154 ENSMUST00000138707 Ino80 protein_coding Interval_86265 chr19 38253734 38254263 + 0 NA Intergenic Intergenic -10579 ENSMUSG00000067242.11 ENSMUSG00000067242 ENSMUST00000130039 Lgi1 protein_coding Interval_83909 chr19 5509847 5511263 + 0 NA promoter-TSS (ENSMUSG00000056185.5) protein_coding-promoter-TSS (ENSMUSG00000056185.5) -73 ENSMUSG00000056185.5 ENSMUSG00000056185 ENSMUST00000238132 Snx32 protein_coding Interval_62500 chr15 93521030 93521620 + 0 NA intron (ENSMUSG00000036158.12, intron 1 of 7) protein_coding-intron (ENSMUSG00000036158.12, intron 1 of 7) -1802 ENSMUSG00000036158.12 ENSMUSG00000036158 ENSMUST00000048982 Prickle1 protein_coding Interval_144662 chr7 27382904 27385207 + 0 NA intron (ENSMUSG00000011751.16, intron 20 of 35) protein_coding-intron (ENSMUSG00000011751.16, intron 20 of 35) -26636 ENSMUSG00000092367.1 ENSMUSG00000092367 ENSMUST00000126587 Gm20479 protein_coding Interval_156451 chr8 48309120 48311013 + 0 NA intron (ENSMUSG00000031561.16, intron 12 of 26) protein_coding-intron (ENSMUSG00000031561.16, intron 13 of 28) -39081 ENSMUSG00000110480.1 ENSMUSG00000110480 ENSMUST00000212653 Gm32842 processed_pseudogene Interval_130477 chr5 128147109 128147748 + 0 NA intron (ENSMUSG00000034310.8, intron 2 of 8) protein_coding-intron (ENSMUSG00000034310.8, intron 2 of 8) 93911 ENSMUSG00000104581.1 ENSMUSG00000104581 ENSMUST00000197363 Gm42497 TEC Interval_109746 chr3 146506796 146507329 + 0 NA exon (ENSMUSG00000028187.10, exon 3 of 3) protein_coding-exon (ENSMUSG00000028187.10, exon 3 of 3) 1430 ENSMUSG00000028187.10 ENSMUSG00000028187 ENSMUST00000199079 Rpf1 protein_coding Interval_156205 chr8 46010510 46011375 + 0 NA promoter-TSS (ENSMUSG00000031637.13) protein_coding-promoter-TSS (ENSMUSG00000031637.13) 331 ENSMUSG00000031637.13 ENSMUSG00000031637 ENSMUST00000132341 Lrp2bp protein_coding Interval_43464 chr13 31504260 31504553 + 0 NA Intergenic Intergenic -51728 ENSMUSG00000038415.10 ENSMUSG00000038415 ENSMUST00000042118 Foxq1 protein_coding Interval_168050 chr9 75625066 75626528 + 0 NA promoter-TSS (ENSMUSG00000032184.5) protein_coding-promoter-TSS (ENSMUSG00000032184.5) 38 ENSMUSG00000032184.5 ENSMUSG00000032184 ENSMUST00000213292 Lysmd2 protein_coding Interval_74885 chr17 57066833 57067180 + 0 NA TTS (ENSMUSG00000002668.8) protein_coding-TTS (ENSMUSG00000002668.8) 2354 ENSMUSG00000117297.1 ENSMUSG00000117297 ENSMUST00000232713 Gm49888 sense_intronic Interval_74237 chr17 47624791 47625063 + 0 NA TTS (ENSMUSG00000092558.3) protein_coding-TTS (ENSMUSG00000092558.3) -2588 ENSMUSG00000083672.1 ENSMUSG00000083672 ENSMUST00000120025 Kpna2-ps processed_pseudogene Interval_48410 chr13 98856525 98857525 + 0 NA intron (ENSMUSG00000009470.17, intron 8 of 15) protein_coding-intron (ENSMUSG00000009470.17, intron 14 of 23) 13298 ENSMUSG00000009470.17 ENSMUSG00000009470 ENSMUST00000179271 Tnpo1 protein_coding Interval_125804 chr5 74284873 74285959 + 0 NA intron (ENSMUSG00000062110.14, intron 5 of 7) protein_coding-intron (ENSMUSG00000062110.14, intron 5 of 8) 3194 ENSMUSG00000062110.14 ENSMUSG00000062110 ENSMUST00000123203 Scfd2 protein_coding Interval_114790 chr4 85288547 85290422 + 0 NA intron (ENSMUSG00000028488.15, intron 1 of 7) protein_coding-intron (ENSMUSG00000028488.15, intron 1 of 8) -43722 ENSMUSG00000081862.1 ENSMUSG00000081862 ENSMUST00000121508 Gm12413 processed_pseudogene Interval_86723 chr19 43255049 43255529 + 0 NA intron (ENSMUSG00000074852.4, intron 3 of 11) protein_coding-intron (ENSMUSG00000074852.4, intron 3 of 11) -11647 ENSMUSG00000117880.1 ENSMUSG00000117880 ENSMUST00000235410 Gm34517 antisense Interval_44336 chr13 43806666 43807329 + 0 NA Intergenic Intergenic 21812 ENSMUSG00000015396.4 ENSMUSG00000015396 ENSMUST00000221359 Cd83 protein_coding Interval_8315 chr1 137225096 137225870 + 0 NA Intergenic Intergenic -9836 ENSMUSG00000077207.1 ENSMUSG00000077207 ENSMUST00000104019 Gm25609 snRNA Interval_35849 chr12 31232342 31232823 + 0 NA Intergenic Intergenic -1990 ENSMUSG00000112518.1 ENSMUSG00000112518 ENSMUST00000218421 Gm48117 processed_pseudogene Interval_102066 chr3 16399110 16399444 + 0 NA Intergenic Intergenic 216041 ENSMUSG00000047213.14 ENSMUSG00000047213 ENSMUST00000108346 Ythdf3 protein_coding Interval_92029 chr2 52720302 52720883 + 0 NA intron (ENSMUSG00000055371.17, intron 3 of 8) protein_coding-intron (ENSMUSG00000055371.17, intron 2 of 13) 18863 ENSMUSG00000085815.1 ENSMUSG00000085815 ENSMUST00000144688 Gm13548 transcribed_processed_pseudogene Interval_65519 chr16 23040039 23040645 + 0 NA Intergenic Intergenic 6310 ENSMUSG00000116996.1 ENSMUSG00000116996 ENSMUST00000231562 Gm8128 processed_pseudogene Interval_28790 chr11 78342916 78344173 + 0 NA promoter-TSS (ENSMUSG00000002058.13) protein_coding-promoter-TSS (ENSMUSG00000002058.13) -3367 ENSMUSG00000002058.13 ENSMUSG00000002058 ENSMUST00000125720 Unc119 protein_coding Interval_153724 chr8 5350714 5351384 + 0 NA Intergenic Intergenic -17936 ENSMUSG00000064507.1 ENSMUSG00000064507 ENSMUST00000082573 n-R5s94 rRNA Interval_28912 chr11 79229756 79230053 + 0 NA Intergenic Intergenic 13045 ENSMUSG00000017677.11 ENSMUSG00000017677 ENSMUST00000137890 Wsb1 protein_coding Interval_79637 chr18 34159158 34159353 + 0 NA Intergenic Intergenic 29684 ENSMUSG00000096804.1 ENSMUSG00000096804 ENSMUST00000157988 Gm23411 snRNA Interval_95772 chr2 116062326 116062538 + 0 NA promoter-TSS (ENSMUSG00000027210.20) protein_coding-promoter-TSS (ENSMUSG00000027210.20) 5012 ENSMUSG00000086328.1 ENSMUSG00000086328 ENSMUST00000140185 2700033N17Rik lincRNA Interval_98080 chr2 147727560 147727754 + 0 NA Intergenic Intergenic 16964 ENSMUSG00000051986.6 ENSMUSG00000051986 ENSMUST00000152542 A530006G24Rik lincRNA Interval_10699 chr1 173336629 173337306 + 0 NA exon (ENSMUSG00000005338.13, exon 10 of 10) protein_coding-exon (ENSMUSG00000005338.13, exon 10 of 10) -3217 ENSMUSG00000037872.5 ENSMUSG00000037872 ENSMUST00000194046 Ackr1 protein_coding Interval_128008 chr5 110260230 110260570 + 0 NA exon (ENSMUSG00000029500.16, exon 6 of 6) protein_coding-exon (ENSMUSG00000029500.16, exon 6 of 6) -1761 ENSMUSG00000087439.1 ENSMUSG00000087439 ENSMUST00000130123 Gm15788 antisense Interval_130003 chr5 123649477 123649698 + 0 NA intron (ENSMUSG00000049550.17, intron 2 of 14) protein_coding-intron (ENSMUSG00000049550.17, intron 2 of 24) -13313 ENSMUSG00000049550.17 ENSMUSG00000049550 ENSMUST00000199018 Clip1 protein_coding Interval_164211 chr9 32585485 32586023 + 0 NA Intergenic Intergenic -27698 ENSMUSG00000110844.1 ENSMUSG00000110844 ENSMUST00000214084 Gm47680 lincRNA Interval_164704 chr9 40685165 40687007 + 0 NA promoter-TSS (ENSMUSG00000032024.10) protein_coding-promoter-TSS (ENSMUSG00000032024.10) 51 ENSMUSG00000032024.10 ENSMUSG00000032024 ENSMUST00000134153 Clmp protein_coding Interval_128678 chr5 114673027 114673799 + 0 NA intron (ENSMUSG00000011884.13, intron 4 of 4) protein_coding-intron (ENSMUSG00000011884.13, intron 4 of 4) 17528 ENSMUSG00000011884.13 ENSMUSG00000011884 ENSMUST00000112212 Gltp protein_coding Interval_164308 chr9 35199364 35200595 + 0 NA promoter-TSS (ENSMUSG00000032042.11) protein_coding-promoter-TSS (ENSMUSG00000032042.11) 9 ENSMUSG00000032041.15 ENSMUSG00000032041 ENSMUST00000177052 Tirap protein_coding Interval_83528 chr18 88875234 88876999 + 0 NA intron (ENSMUSG00000056153.15, intron 2 of 2) protein_coding-intron (ENSMUSG00000056153.15, intron 2 of 2) 18143 ENSMUSG00000056153.15 ENSMUSG00000056153 ENSMUST00000147313 Socs6 protein_coding Interval_95977 chr2 118883047 118883878 + 0 NA TTS (ENSMUSG00000027332.11) protein_coding-TTS (ENSMUSG00000027332.11) 7029 ENSMUSG00000027332.11 ENSMUSG00000027332 ENSMUST00000154104 Ivd protein_coding Interval_31747 chr11 102594951 102596052 + 0 NA Intergenic Intergenic -8895 ENSMUSG00000050288.6 ENSMUSG00000050288 ENSMUST00000057893 Fzd2 protein_coding Interval_156715 chr8 57540066 57540941 + 0 NA intron (ENSMUSG00000031608.13, intron 6 of 11) protein_coding-intron (ENSMUSG00000031608.13, intron 6 of 11) -9272 ENSMUSG00000077526.1 ENSMUSG00000077526 ENSMUST00000104338 Gm25379 snoRNA Interval_61097 chr15 79210255 79210770 + 0 NA intron (ENSMUSG00000075555.12, intron 2 of 3) processed_transcript-intron (ENSMUSG00000075555.12, intron 4 of 4) -18879 ENSMUSG00000116121.1 ENSMUSG00000116121 ENSMUST00000053926 Gm49486 protein_coding Interval_82429 chr18 73930672 73932119 + 0 NA intron (ENSMUSG00000024558.12, intron 3 of 3) protein_coding-intron (ENSMUSG00000024558.12, intron 5 of 5) 72008 ENSMUSG00000064036.15 ENSMUSG00000064036 ENSMUST00000134847 Mro protein_coding Interval_100469 chr2 169238057 169238665 + 0 NA TTS (ENSMUSG00000085369.1) lincRNA-TTS (ENSMUSG00000085369.1) 3370 ENSMUSG00000085369.1 ENSMUSG00000085369 ENSMUST00000152494 9430093N23Rik lincRNA Interval_42213 chr13 10031519 10032096 + 0 NA intron (ENSMUSG00000046159.16, intron 3 of 4) protein_coding-intron (ENSMUSG00000046159.16, intron 3 of 4) 20041 ENSMUSG00000113502.1 ENSMUSG00000113502 ENSMUST00000222830 Gm47411 TEC Interval_3455 chr1 58484274 58484684 + 0 NA intron (ENSMUSG00000026037.14, intron 4 of 4) protein_coding-intron (ENSMUSG00000026037.14, intron 7 of 17) -17858 ENSMUSG00000094245.1 ENSMUSG00000094245 ENSMUST00000179823 Gm23966 snRNA Interval_167328 chr9 67423912 67424698 + 0 NA promoter-TSS (ENSMUSG00000111412.1) antisense-promoter-TSS (ENSMUSG00000111412.1) -198 ENSMUSG00000111412.1 ENSMUSG00000111412 ENSMUST00000216972 Gm47047 antisense Interval_28113 chr11 72940374 72941688 + 0 NA Intergenic Intergenic -12076 ENSMUSG00000105756.1 ENSMUSG00000105756 ENSMUST00000198722 Gm44467 miRNA Interval_37017 chr12 56459216 56459678 + 0 NA Intergenic Intergenic 41381 ENSMUSG00000112468.1 ENSMUSG00000112468 ENSMUST00000219957 Gm47720 TEC Interval_72382 chr17 29503238 29504088 + 0 NA Intergenic Intergenic 10626 ENSMUSG00000024014.8 ENSMUSG00000024014 ENSMUST00000234270 Pim1 protein_coding Interval_88668 chr2 9445786 9446717 + 0 NA exon (ENSMUSG00000079604.9, exon 4 of 4) lincRNA-exon (ENSMUSG00000079604.9, exon 4 of 4) 93731 ENSMUSG00000079604.9 ENSMUSG00000079604 ENSMUST00000154223 Gm13219 lincRNA Interval_32498 chr11 107914717 107915320 + 0 NA promoter-TSS (ENSMUSG00000040373.12) protein_coding-promoter-TSS (ENSMUSG00000040373.12) -3656 ENSMUSG00000040373.12 ENSMUSG00000040373 ENSMUST00000039071 Cacng5 protein_coding Interval_143042 chr6 148856426 148856605 + 0 NA intron (ENSMUSG00000030309.16, intron 14 of 18) protein_coding-intron (ENSMUSG00000030309.16, intron 13 of 17) 25063 ENSMUSG00000107909.1 ENSMUSG00000107909 ENSMUST00000204670 2610017A05Rik TEC Interval_2006 chr1 35855991 35856923 + 0 NA Intergenic Intergenic -23388 ENSMUSG00000102531.1 ENSMUSG00000102531 ENSMUST00000194261 1110002O04Rik lincRNA Interval_6654 chr1 118564337 118565154 + 0 NA intron (ENSMUSG00000064302.13, intron 8 of 14) protein_coding-intron (ENSMUSG00000064302.13, intron 32 of 39) 52028 ENSMUSG00000064302.13 ENSMUSG00000064302 ENSMUST00000187575 Clasp1 protein_coding Interval_28792 chr11 78358411 78359030 + 0 NA exon (ENSMUSG00000002057.4, exon 9 of 9) protein_coding-exon (ENSMUSG00000002057.4, exon 9 of 9) 11809 ENSMUSG00000002058.13 ENSMUSG00000002058 ENSMUST00000125720 Unc119 protein_coding Interval_170505 chr9 108347264 108348621 + 0 NA promoter-TSS (ENSMUSG00000032612.14) protein_coding-promoter-TSS (ENSMUSG00000032612.14) 8666 ENSMUSG00000063856.7 ENSMUSG00000063856 ENSMUST00000193987 Gpx1 protein_coding Interval_40487 chr12 105139550 105139995 + 0 NA Intergenic Intergenic 4576 ENSMUSG00000113051.1 ENSMUSG00000113051 ENSMUST00000222354 Gm47672 processed_pseudogene Interval_157557 chr8 71411337 71412438 + 0 NA Intergenic Intergenic 4196 ENSMUSG00000046295.13 ENSMUSG00000046295 ENSMUST00000136522 Ankle1 protein_coding Interval_101569 chr3 6750820 6751047 + 0 NA TTS (ENSMUSG00000103538.3) unprocessed_pseudogene-TTS (ENSMUSG00000103538.3) 1139 ENSMUSG00000103538.3 ENSMUSG00000103538 ENSMUST00000192834 Olfr289-ps1 unprocessed_pseudogene Interval_53333 chr14 56337166 56338099 + 0 NA Intergenic Intergenic -38366 ENSMUSG00000022229.3 ENSMUSG00000022229 ENSMUST00000225698 Atp12a protein_coding Interval_159380 chr8 94183054 94184803 + 0 NA intron (ENSMUSG00000110524.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000110524.1, intron 1 of 1) 639 ENSMUSG00000110524.1 ENSMUSG00000110524 ENSMUST00000212456 Gm39228 lincRNA Interval_117457 chr4 123830565 123830784 + 0 NA TTS (ENSMUSG00000043333.12) protein_coding-TTS (ENSMUSG00000043333.12) -7430 ENSMUSG00000082310.1 ENSMUSG00000082310 ENSMUST00000117451 Gm12904 processed_pseudogene Interval_85654 chr19 29365246 29365515 + 0 NA promoter-TSS (ENSMUSG00000016495.12) protein_coding-promoter-TSS (ENSMUSG00000016495.12) -2075 ENSMUSG00000016496.7 ENSMUSG00000016496 ENSMUST00000016640 Cd274 protein_coding Interval_71645 chr17 25109397 25109976 + 0 NA intron (ENSMUSG00000024170.15, intron 6 of 17) protein_coding-intron (ENSMUSG00000024170.15, intron 6 of 20) -1536 ENSMUSG00000024170.15 ENSMUSG00000024170 ENSMUST00000130525 Telo2 protein_coding Interval_122958 chr5 27837903 27838665 + 0 NA Intergenic Intergenic -3865 ENSMUSG00000039106.6 ENSMUSG00000039106 ENSMUST00000036227 Htr5a protein_coding Interval_126543 chr5 90119672 90120001 + 0 NA Intergenic Intergenic -12393 ENSMUSG00000043618.9 ENSMUSG00000043618 ENSMUST00000135410 Eif5al3-ps processed_pseudogene Interval_108122 chr3 121650081 121651127 + 0 NA Intergenic Intergenic -7237 ENSMUSG00000044522.8 ENSMUSG00000044522 ENSMUST00000198402 A730020M07Rik lincRNA Interval_10057 chr1 165459563 165461747 + 0 NA promoter-TSS (ENSMUSG00000026568.6) protein_coding-promoter-TSS (ENSMUSG00000026568.6) 18 ENSMUSG00000026568.6 ENSMUSG00000026568 ENSMUST00000138999 Mpc2 protein_coding Interval_108460 chr3 127416894 127417091 + 0 NA intron (ENSMUSG00000032826.19, intron 1 of 1) protein_coding-intron (ENSMUSG00000032826.19, intron 1 of 1) -23286 ENSMUSG00000105822.1 ENSMUSG00000105822 ENSMUST00000199858 Gm42969 TEC Interval_75811 chr17 71561606 71561813 + 0 NA intron (ENSMUSG00000085492.7, intron 5 of 6) antisense-intron (ENSMUSG00000085492.7, intron 5 of 6) 9648 ENSMUSG00000052525.14 ENSMUSG00000052525 ENSMUST00000144142 Spdya protein_coding Interval_56888 chr14 122870008 122870403 + 0 NA intron (ENSMUSG00000041625.15, intron 3 of 3) protein_coding-intron (ENSMUSG00000041650.15, intron 21 of 23) -42870 ENSMUSG00000075463.3 ENSMUSG00000075463 ENSMUST00000162218 4930594M22Rik processed_transcript Interval_68364 chr16 74410330 74413241 + 0 NA promoter-TSS (ENSMUSG00000052516.19) protein_coding-promoter-TSS (ENSMUSG00000052516.19) -69718 ENSMUSG00000104758.1 ENSMUSG00000104758 ENSMUST00000199719 Mir691 miRNA Interval_166304 chr9 58209469 58210521 + 0 NA Intergenic Intergenic -5689 ENSMUSG00000037206.15 ENSMUSG00000037206 ENSMUST00000217578 Islr protein_coding Interval_43402 chr13 30093198 30093821 + 0 NA Intergenic Intergenic -4984 ENSMUSG00000113366.1 ENSMUSG00000113366 ENSMUST00000220600 Gm47259 TEC Interval_95703 chr2 114519848 114520020 + 0 NA intron (ENSMUSG00000057147.13, intron 6 of 7) protein_coding-intron (ENSMUSG00000057147.13, intron 6 of 7) -134491 ENSMUSG00000084785.1 ENSMUSG00000084785 ENSMUST00000153726 Gm13972 processed_transcript Interval_107186 chr3 104433860 104434911 + 0 NA intron (ENSMUSG00000032913.13, intron 1 of 1) protein_coding-intron (ENSMUSG00000032913.13, intron 1 of 1) -16058 ENSMUSG00000106453.1 ENSMUSG00000106453 ENSMUST00000200606 Gm9273 processed_pseudogene Interval_112127 chr4 34864224 34864461 + 0 NA intron (ENSMUSG00000039967.14, intron 1 of 7) protein_coding-intron (ENSMUSG00000039967.14, intron 1 of 7) 18588 ENSMUSG00000039967.14 ENSMUSG00000039967 ENSMUST00000047950 Zfp292 protein_coding Interval_45985 chr13 59792588 59792964 + 0 NA intron (ENSMUSG00000035248.9, intron 9 of 18) protein_coding-intron (ENSMUSG00000035248.9, intron 17 of 27) -10531 ENSMUSG00000114763.1 ENSMUSG00000114763 ENSMUST00000225581 Gm49354 protein_coding Interval_91689 chr2 47810197 47810849 + 0 NA Intergenic Intergenic 268539 ENSMUSG00000092853.1 ENSMUSG00000092853 ENSMUST00000175112 Gm25959 miRNA Interval_160299 chr8 107859652 107860785 + 0 NA Intergenic Intergenic -9467 ENSMUSG00000110625.1 ENSMUSG00000110625 ENSMUST00000212462 5033426E14Rik lincRNA Interval_153009 chr7 140840993 140841895 + 0 NA intron (ENSMUSG00000099590.1, intron 2 of 3) antisense-intron (ENSMUSG00000099590.1, intron 2 of 3) -4103 ENSMUSG00000038801.6 ENSMUSG00000038801 ENSMUST00000035300 Scgb1c1 protein_coding Interval_102351 chr3 22093905 22094812 + 0 NA intron (ENSMUSG00000027630.13, intron 2 of 16) protein_coding-intron (ENSMUSG00000027630.13, intron 1 of 15) -13243 ENSMUSG00000103293.1 ENSMUSG00000103293 ENSMUST00000195073 Gm5842 processed_pseudogene Interval_66997 chr16 39186025 39186401 + 0 NA Intergenic Intergenic 2693 ENSMUSG00000116965.1 ENSMUSG00000116965 ENSMUST00000231748 Gm36742 lincRNA Interval_1589 chr1 28339680 28339913 + 0 NA Intergenic Intergenic -230122 ENSMUSG00000103241.1 ENSMUSG00000103241 ENSMUST00000193585 Gm38089 TEC Interval_46101 chr13 61722028 61722735 + 0 NA intron (ENSMUSG00000113295.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000113295.1, intron 1 of 2) -1207 ENSMUSG00000113899.1 ENSMUSG00000113899 ENSMUST00000222177 Gm9595 processed_pseudogene Interval_43130 chr13 24514948 24515584 + 0 NA intron (ENSMUSG00000036006.20, intron 1 of 13) protein_coding-intron (ENSMUSG00000036006.20, intron 1 of 13) 13741 ENSMUSG00000036006.20 ENSMUSG00000036006 ENSMUST00000177489 Ripor2 protein_coding Interval_124584 chr5 51872530 51873752 + 0 NA Intergenic Intergenic 6461 ENSMUSG00000106010.1 ENSMUSG00000106010 ENSMUST00000198989 Gm42616 TEC Interval_148953 chr7 90341487 90342567 + 0 NA intron (ENSMUSG00000030616.16, intron 1 of 6) protein_coding-intron (ENSMUSG00000030616.16, intron 1 of 6) -6672 ENSMUSG00000030616.16 ENSMUSG00000030616 ENSMUST00000189194 Sytl2 protein_coding Interval_150953 chr7 116665581 116666001 + 0 NA Intergenic Intergenic 25694 ENSMUSG00000088234.1 ENSMUSG00000088234 ENSMUST00000157609 Gm25423 snRNA Interval_9126 chr1 153878054 153878434 + 0 NA intron (ENSMUSG00000045968.7, intron 1 of 2) protein_coding-intron (ENSMUSG00000045968.7, intron 1 of 2) 3899 ENSMUSG00000043282.3 ENSMUSG00000043282 ENSMUST00000055314 Teddm1b protein_coding Interval_135652 chr6 42341027 42341795 + 0 NA intron (ENSMUSG00000108033.1, intron 1 of 1) antisense-intron (ENSMUSG00000108033.1, intron 1 of 1) -3628 ENSMUSG00000065206.1 ENSMUSG00000065206 ENSMUST00000083272 Gm24611 snRNA Interval_74409 chr17 50003028 50003841 + 0 NA intron (ENSMUSG00000039316.14, intron 6 of 7) protein_coding-intron (ENSMUSG00000039316.14, intron 8 of 9) 30607 ENSMUSG00000118535.1 ENSMUSG00000118535 ENSMUST00000239097 AC133946.1 unitary_pseudogene Interval_101506 chr3 3207379 3207680 + 0 NA Intergenic Intergenic 19496 ENSMUSG00000103416.1 ENSMUSG00000103416 ENSMUST00000191986 Gm37338 TEC Interval_128631 chr5 114406548 114407531 + 0 NA intron (ENSMUSG00000029577.13, intron 7 of 17) protein_coding-intron (ENSMUSG00000029577.13, intron 17 of 27) 2571 ENSMUSG00000098731.1 ENSMUSG00000098731 ENSMUST00000183408 Mir7027 miRNA Interval_133457 chr6 5271118 5271635 + 0 NA exon (ENSMUSG00000032667.17, exon 5 of 5) protein_coding-exon (ENSMUSG00000032667.17, exon 5 of 5) -8279 ENSMUSG00000107668.1 ENSMUSG00000107668 ENSMUST00000203438 Gm44424 TEC Interval_46826 chr13 71733055 71733683 + 0 NA intron (ENSMUSG00000114038.1, intron 4 of 7) processed_transcript-intron (ENSMUSG00000114038.1, intron 4 of 7) 52526 ENSMUSG00000114038.1 ENSMUSG00000114038 ENSMUST00000223183 Gm40999 processed_transcript Interval_113092 chr4 48051429 48052283 + 0 NA exon (ENSMUSG00000028341.9, exon 3 of 8) protein_coding-exon (ENSMUSG00000028341.9, exon 3 of 8) 6625 ENSMUSG00000028341.9 ENSMUSG00000028341 ENSMUST00000133539 Nr4a3 protein_coding Interval_142766 chr6 145463194 145463461 + 0 NA promoter-TSS (ENSMUSG00000088781.1) snoRNA-promoter-TSS (ENSMUSG00000088781.1) -862 ENSMUSG00000088781.1 ENSMUSG00000088781 ENSMUST00000158156 Gm25373 snoRNA Interval_123293 chr5 31168555 31168812 + 0 NA intron (ENSMUSG00000106864.3, intron 7 of 8) protein_coding-intron (ENSMUSG00000106864.3, intron 7 of 18) -10530 ENSMUSG00000101678.3 ENSMUSG00000101678 ENSMUST00000101411 Gm29609 protein_coding Interval_126489 chr5 88928617 88930427 + 0 NA intron (ENSMUSG00000060961.16, intron 1 of 25) protein_coding-intron (ENSMUSG00000060961.16, intron 1 of 24) 43036 ENSMUSG00000060961.16 ENSMUSG00000060961 ENSMUST00000134303 Slc4a4 protein_coding Interval_118806 chr4 133815795 133816579 + 0 NA promoter-TSS (ENSMUSG00000084789.1) lincRNA-promoter-TSS (ENSMUSG00000084789.1) -233 ENSMUSG00000084789.1 ENSMUSG00000084789 ENSMUST00000129875 Gm12974 lincRNA Interval_21265 chr10 127555545 127556283 + 0 NA intron (ENSMUSG00000040249.15, intron 54 of 88) protein_coding-intron (ENSMUSG00000040249.15, intron 54 of 88) -12706 ENSMUSG00000040249.15 ENSMUSG00000040249 ENSMUST00000118455 Lrp1 protein_coding Interval_98738 chr2 154592861 154593783 + 0 NA intron (ENSMUSG00000000876.11, intron 2 of 3) protein_coding-intron (ENSMUSG00000000876.11, intron 2 of 3) 10366 ENSMUSG00000000876.11 ENSMUSG00000000876 ENSMUST00000109703 Pxmp4 protein_coding Interval_162169 chr8 125675127 125675678 + 0 NA Intergenic Intergenic 5584 ENSMUSG00000050930.5 ENSMUSG00000050930 ENSMUST00000053078 Map10 protein_coding Interval_8475 chr1 139792654 139793049 + 0 NA Intergenic Intergenic 5868 ENSMUSG00000095393.1 ENSMUSG00000095393 ENSMUST00000122621 Gm25619 snRNA Interval_92297 chr2 58514745 58516619 + 0 NA intron (ENSMUSG00000026836.15, intron 3 of 12) protein_coding-intron (ENSMUSG00000026836.15, intron 2 of 10) 590 ENSMUSG00000026836.15 ENSMUSG00000026836 ENSMUST00000126407 Acvr1 protein_coding Interval_36085 chr12 35418144 35420248 + 0 NA Intergenic Intergenic -21994 ENSMUSG00000065195.1 ENSMUSG00000065195 ENSMUST00000083261 Gm26071 snRNA Interval_92681 chr2 62459146 62459389 + 0 NA intron (ENSMUSG00000087518.1, intron 1 of 4) antisense-intron (ENSMUSG00000087518.1, intron 1 of 4) -2619 ENSMUSG00000087422.1 ENSMUSG00000087422 ENSMUST00000131533 Gm13564 lincRNA Interval_95062 chr2 103629562 103629855 + 0 NA intron (ENSMUSG00000032724.5, intron 1 of 16) protein_coding-intron (ENSMUSG00000032724.5, intron 1 of 16) 82449 ENSMUSG00000081687.1 ENSMUSG00000081687 ENSMUST00000118456 Gm13996 processed_pseudogene Interval_45466 chr13 55300050 55300348 + 0 NA intron (ENSMUSG00000021488.8, intron 16 of 20) protein_coding-intron (ENSMUSG00000021488.8, intron 18 of 22) 21747 ENSMUSG00000034789.8 ENSMUSG00000034789 ENSMUST00000223672 Rab24 protein_coding Interval_16327 chr10 62261140 62262715 + 0 NA intron (ENSMUSG00000020081.5, intron 4 of 4) protein_coding-intron (ENSMUSG00000020081.5, intron 4 of 4) 9489 ENSMUSG00000020081.5 ENSMUSG00000020081 ENSMUST00000020278 Tacr2 protein_coding Interval_10521 chr1 171452875 171453707 + 0 NA intron (ENSMUSG00000038235.4, intron 1 of 2) protein_coding-intron (ENSMUSG00000038235.4, intron 1 of 9) -9559 ENSMUSG00000038235.4 ENSMUSG00000038235 ENSMUST00000155913 F11r protein_coding Interval_86802 chr19 43958967 43959733 + 0 NA intron (ENSMUSG00000025196.4, intron 8 of 8) protein_coding-intron (ENSMUSG00000025196.4, intron 8 of 8) 9343 ENSMUSG00000025196.4 ENSMUSG00000025196 ENSMUST00000131882 Cpn1 protein_coding Interval_84052 chr19 6974223 6975465 + 0 NA promoter-TSS (ENSMUSG00000056612.7) protein_coding-promoter-TSS (ENSMUSG00000056612.7) -471 ENSMUSG00000056612.7 ENSMUSG00000056612 ENSMUST00000235195 Ppp1r14b protein_coding Interval_131688 chr5 139299402 139301029 + 0 NA intron (ENSMUSG00000056413.16, intron 2 of 9) protein_coding-intron (ENSMUSG00000056413.16, intron 3 of 10) 2935 ENSMUSG00000056413.16 ENSMUSG00000056413 ENSMUST00000156815 Adap1 protein_coding Interval_167929 chr9 74467719 74467927 + 0 NA Intergenic Intergenic 93555 ENSMUSG00000101526.1 ENSMUSG00000101526 ENSMUST00000189842 Gm28622 lincRNA Interval_50042 chr13 120155651 120156031 + 0 NA TTS (ENSMUSG00000096323.2) protein_coding-TTS (ENSMUSG00000096323.2) 6462 ENSMUSG00000114798.1 ENSMUSG00000114798 ENSMUST00000224202 Gm20769 processed_pseudogene Interval_15979 chr10 59843050 59843731 + 0 NA intron (ENSMUSG00000020111.15, intron 10 of 12) protein_coding-intron (ENSMUSG00000020111.15, intron 12 of 13) -25593 ENSMUSG00000094824.1 ENSMUSG00000094824 ENSMUST00000104610 Gm23803 snoRNA Interval_165425 chr9 47750720 47751101 + 0 NA intron (ENSMUSG00000032076.20, intron 1 of 8) protein_coding-intron (ENSMUSG00000032076.20, intron 1 of 8) -20231 ENSMUSG00000110959.1 ENSMUSG00000110959 ENSMUST00000214736 Gm47198 TEC Interval_30328 chr11 93646869 93647087 + 0 NA Intergenic Intergenic -3781 ENSMUSG00000082453.1 ENSMUSG00000082453 ENSMUST00000120917 Gm11502 processed_pseudogene Interval_116820 chr4 117438278 117439081 + 0 NA intron (ENSMUSG00000028677.19, intron 2 of 2) protein_coding-intron (ENSMUSG00000028677.19, intron 2 of 14) -7271 ENSMUSG00000086876.1 ENSMUSG00000086876 ENSMUST00000136115 Gm12828 antisense Interval_60030 chr15 64097997 64098745 + 0 NA promoter-TSS (ENSMUSG00000093695.2) antisense-promoter-TSS (ENSMUSG00000093695.2) 54 ENSMUSG00000093695.2 ENSMUSG00000093695 ENSMUST00000228817 Gm20717 antisense Interval_107863 chr3 116387292 116387549 + 0 NA intron (ENSMUSG00000033502.15, intron 4 of 14) protein_coding-intron (ENSMUSG00000033502.15, intron 4 of 15) 37317 ENSMUSG00000106005.1 ENSMUSG00000106005 ENSMUST00000196669 Gm29151 antisense Interval_23877 chr11 27498946 27499468 + 0 NA intron (ENSMUSG00000081658.1, intron 1 of 1) processed_pseudogene-intron (ENSMUSG00000081658.1, intron 1 of 1) 340 ENSMUSG00000081658.1 ENSMUSG00000081658 ENSMUST00000117049 Gm12077 processed_pseudogene Interval_28901 chr11 79155424 79155628 + 0 NA Intergenic Intergenic -57270 ENSMUSG00000081000.1 ENSMUSG00000081000 ENSMUST00000121698 Gm11200 processed_pseudogene Interval_21662 chr11 3535105 3536195 + 0 NA TTS (ENSMUSG00000084962.1) processed_transcript-TTS (ENSMUSG00000084962.1) 1412 ENSMUSG00000084962.1 ENSMUSG00000084962 ENSMUST00000125275 Gm11947 processed_transcript Interval_79592 chr18 33911647 33912550 + 0 NA intron (ENSMUSG00000024376.7, intron 3 of 23) protein_coding-intron (ENSMUSG00000024376.7, intron 3 of 23) 94868 ENSMUSG00000024376.7 ENSMUSG00000024376 ENSMUST00000237971 Epb41l4a protein_coding Interval_143449 chr7 6866694 6867176 + 0 NA intron (ENSMUSG00000051527.11, intron 2 of 7) protein_coding-intron (ENSMUSG00000051527.11, intron 2 of 7) -24103 ENSMUSG00000109082.1 ENSMUSG00000109082 ENSMUST00000207166 Gm44586 TEC Interval_84488 chr19 11804438 11804846 + 0 NA intron (ENSMUSG00000041488.16, intron 1 of 10) protein_coding-intron (ENSMUSG00000041488.16, intron 1 of 11) 14251 ENSMUSG00000041488.16 ENSMUSG00000041488 ENSMUST00000209304 Stx3 protein_coding Interval_51165 chr14 24292497 24292760 + 0 NA promoter-TSS (ENSMUSG00000038925.14) protein_coding-promoter-TSS (ENSMUSG00000038925.14) -2066 ENSMUSG00000038925.14 ENSMUSG00000038925 ENSMUST00000239268 E330034G19Rik protein_coding Interval_78163 chr18 9562690 9563044 + 0 NA Intergenic Intergenic 15570 ENSMUSG00000117641.1 ENSMUSG00000117641 ENSMUST00000234100 Gm46641 processed_pseudogene Interval_150861 chr7 115920720 115920927 + 0 NA intron (ENSMUSG00000051910.13, intron 2 of 11) protein_coding-intron (ENSMUSG00000051910.13, intron 2 of 16) -74451 ENSMUSG00000108489.1 ENSMUSG00000108489 ENSMUST00000206043 Gm45025 antisense Interval_105211 chr3 83878758 83880614 + 0 NA Intergenic Intergenic 27893 ENSMUSG00000033767.14 ENSMUSG00000033767 ENSMUST00000192811 Tmem131l protein_coding Interval_111868 chr4 32126797 32127283 + 0 NA Intergenic Intergenic -22746 ENSMUSG00000083872.1 ENSMUSG00000083872 ENSMUST00000119323 Gm11928 processed_pseudogene Interval_34749 chr12 9425148 9425882 + 0 NA intron (ENSMUSG00000113913.1, intron 2 of 3) lincRNA-intron (ENSMUSG00000113913.1, intron 2 of 3) -4032 ENSMUSG00000060647.2 ENSMUSG00000060647 ENSMUST00000080066 Gm7099 processed_pseudogene Interval_152303 chr7 131573296 131573539 + 0 NA intron (ENSMUSG00000030849.18, intron 2 of 6) protein_coding-intron (ENSMUSG00000030849.18, intron 2 of 6) 13010 ENSMUSG00000066979.6 ENSMUSG00000066979 ENSMUST00000207442 Bub3 protein_coding Interval_112815 chr4 45246252 45247476 + 0 NA intron (ENSMUSG00000035615.12, intron 4 of 6) protein_coding-intron (ENSMUSG00000035615.12, intron 4 of 15) -2874 ENSMUSG00000086284.1 ENSMUSG00000086284 ENSMUST00000134640 Frmpd1os antisense Interval_167422 chr9 68985541 68986013 + 0 NA intron (ENSMUSG00000032238.17, intron 1 of 5) protein_coding-intron (ENSMUSG00000032238.17, intron 1 of 10) 331886 ENSMUSG00000032238.17 ENSMUSG00000032238 ENSMUST00000113624 Rora protein_coding Interval_153826 chr8 9227799 9228383 + 0 NA intron (ENSMUSG00000079157.4, intron 2 of 3) protein_coding-intron (ENSMUSG00000079157.4, intron 2 of 2) -10681 ENSMUSG00000109040.1 ENSMUSG00000109040 ENSMUST00000208677 Gm44542 TEC Interval_57458 chr15 11320365 11321005 + 0 NA intron (ENSMUSG00000047497.10, intron 20 of 23) protein_coding-intron (ENSMUSG00000047497.10, intron 20 of 23) 41052 ENSMUSG00000089304.1 ENSMUSG00000089304 ENSMUST00000158679 Gm24844 snoRNA Interval_26211 chr11 55130866 55131724 + 0 NA intron (ENSMUSG00000049491.15, intron 9 of 11) protein_coding-intron (ENSMUSG00000049491.15, intron 8 of 10) -5749 ENSMUSG00000085531.1 ENSMUSG00000085531 ENSMUST00000155883 Slc36a3os antisense Interval_114271 chr4 70379656 70380156 + 0 NA intron (ENSMUSG00000039298.16, intron 4 of 36) protein_coding-intron (ENSMUSG00000039298.16, intron 3 of 33) 30537 ENSMUSG00000039298.16 ENSMUSG00000039298 ENSMUST00000126416 Cdk5rap2 protein_coding Interval_42538 chr13 14890765 14891357 + 0 NA Intergenic Intergenic 29061 ENSMUSG00000113686.1 ENSMUSG00000113686 ENSMUST00000221689 Gm19189 processed_pseudogene Interval_157402 chr8 70138930 70139980 + 0 NA promoter-TSS (ENSMUSG00000002345.18) protein_coding-promoter-TSS (ENSMUSG00000002345.18) -256 ENSMUSG00000079033.10 ENSMUSG00000079033 ENSMUST00000110140 Mef2b protein_coding Interval_5565 chr1 89844006 89844467 + 0 NA intron (ENSMUSG00000055013.16, intron 15 of 16) protein_coding-intron (ENSMUSG00000055013.16, intron 16 of 17) 18755 ENSMUSG00000103252.1 ENSMUSG00000103252 ENSMUST00000193177 Gm37521 TEC Interval_159023 chr8 88879953 88880509 + 0 NA Intergenic Intergenic -17157 ENSMUSG00000109778.1 ENSMUSG00000109778 ENSMUST00000211407 Gm45504 TEC Interval_48732 chr13 102578613 102579392 + 0 NA intron (ENSMUSG00000114846.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000114846.1, intron 1 of 1) 11283 ENSMUSG00000114846.1 ENSMUSG00000114846 ENSMUST00000225128 Gm29927 lincRNA Interval_60383 chr15 73407644 73408452 + 0 NA exon (ENSMUSG00000115602.1, exon 1 of 1) processed_pseudogene-exon (ENSMUSG00000115602.1, exon 1 of 1) 191 ENSMUSG00000115602.1 ENSMUSG00000115602 ENSMUST00000228413 Gm7908 processed_pseudogene Interval_84767 chr19 16400135 16400421 + 0 NA Intergenic Intergenic -13216 ENSMUSG00000118142.1 ENSMUSG00000118142 ENSMUST00000237669 Gm19312 processed_pseudogene Interval_136110 chr6 51108133 51109048 + 0 NA Intergenic Intergenic 141322 ENSMUSG00000108153.1 ENSMUSG00000108153 ENSMUST00000203677 Gm44402 processed_pseudogene Interval_98246 chr2 150370154 150370387 + 0 NA Intergenic Intergenic -7528 ENSMUSG00000063364.10 ENSMUSG00000063364 ENSMUST00000138130 3300002I08Rik protein_coding Interval_101270 chr2 180006604 180006822 + 0 NA Intergenic Intergenic 13525 ENSMUSG00000082850.1 ENSMUSG00000082850 ENSMUST00000117586 Gm14299 processed_pseudogene Interval_82003 chr18 67065834 67066552 + 0 NA promoter-TSS (ENSMUSG00000117815.1) lincRNA-promoter-TSS (ENSMUSG00000117815.1) -385 ENSMUSG00000117815.1 ENSMUSG00000117815 ENSMUST00000237332 Gm50166 lincRNA Interval_82687 chr18 75931960 75932396 + 0 NA intron (ENSMUSG00000044646.15, intron 2 of 5) protein_coding-intron (ENSMUSG00000044646.15, intron 2 of 4) 83499 ENSMUSG00000118311.1 ENSMUSG00000118311 ENSMUST00000238127 1700003O11Rik antisense Interval_152571 chr7 134701856 134702553 + 0 NA intron (ENSMUSG00000058325.6, intron 1 of 18) protein_coding-intron (ENSMUSG00000058325.6, intron 1 of 51) 31517 ENSMUSG00000058325.6 ENSMUSG00000058325 ENSMUST00000210121 Dock1 protein_coding Interval_153753 chr8 6785161 6785342 + 0 NA Intergenic Intergenic 45727 ENSMUSG00000109457.1 ENSMUSG00000109457 ENSMUST00000208756 Gm44909 processed_pseudogene Interval_143534 chr7 12253105 12253374 + 0 NA exon (ENSMUSG00000115027.1, exon 4 of 4) protein_coding-exon (ENSMUSG00000115027.1, exon 4 of 4) 15030 ENSMUSG00000115027.1 ENSMUSG00000115027 ENSMUST00000086232 Vmn1r81 protein_coding Interval_7814 chr1 133882286 133882535 + 0 NA Intergenic Intergenic -24121 ENSMUSG00000090208.1 ENSMUSG00000090208 ENSMUST00000160564 Gm15851 antisense Interval_132552 chr5 146262618 146262950 + 0 NA intron (ENSMUSG00000029635.15, intron 2 of 11) protein_coding-intron (ENSMUSG00000029635.15, intron 2 of 12) 14233 ENSMUSG00000080957.1 ENSMUSG00000080957 ENSMUST00000118049 Gm15739 processed_pseudogene Interval_32029 chr11 104568074 104568424 + 0 NA intron (ENSMUSG00000061086.12, intron 2 of 8) protein_coding-intron (ENSMUSG00000061086.12, intron 2 of 8) -1523 ENSMUSG00000081588.1 ENSMUSG00000081588 ENSMUST00000121761 Gm11661 transcribed_processed_pseudogene Interval_55689 chr14 99055085 99055455 + 0 NA intron (ENSMUSG00000022070.7, intron 4 of 12) protein_coding-intron (ENSMUSG00000022070.7, intron 4 of 11) 8816 ENSMUSG00000022070.7 ENSMUSG00000022070 ENSMUST00000227128 Bora protein_coding Interval_165058 chr9 44198470 44199196 + 0 NA intron (ENSMUSG00000034342.9, intron 2 of 15) protein_coding-intron (ENSMUSG00000034342.9, intron 2 of 14) -18132 ENSMUSG00000110972.1 ENSMUSG00000110972 ENSMUST00000214603 5830462O15Rik TEC Interval_146343 chr7 45426625 45426982 + 0 NA intron (ENSMUSG00000003868.14, intron 4 of 5) protein_coding-intron (ENSMUSG00000003868.14, intron 6 of 14) 5983 ENSMUSG00000100916.3 ENSMUSG00000100916 ENSMUST00000072453 Lhb protein_coding Interval_93212 chr2 71188993 71189627 + 0 NA Intergenic Intergenic -22694 ENSMUSG00000027012.15 ENSMUSG00000027012 ENSMUST00000138613 Dync1i2 protein_coding Interval_145659 chr7 36895322 36896573 + 0 NA Intergenic Intergenic -144474 ENSMUSG00000089273.1 ENSMUSG00000089273 ENSMUST00000158648 Gm24550 misc_RNA Interval_147291 chr7 65519618 65520329 + 0 NA intron (ENSMUSG00000030516.14, intron 1 of 1) protein_coding-intron (ENSMUSG00000030516.14, intron 1 of 4) -38752 ENSMUSG00000108533.1 ENSMUSG00000108533 ENSMUST00000207008 Gm44792 TEC Interval_94573 chr2 92370678 92372493 + 0 NA promoter-TSS (ENSMUSG00000040434.16) protein_coding-promoter-TSS (ENSMUSG00000040434.16) -3091 ENSMUSG00000027222.14 ENSMUSG00000027222 ENSMUST00000148386 Pex16 protein_coding Interval_45669 chr13 56702517 56704156 + 0 NA promoter-TSS (ENSMUSG00000021540.16) protein_coding-promoter-TSS (ENSMUSG00000021540.16) 297 ENSMUSG00000021540.16 ENSMUSG00000021540 ENSMUST00000136702 Smad5 protein_coding Interval_54290 chr14 67197127 67197662 + 0 NA intron (ENSMUSG00000114697.1, intron 2 of 6) lincRNA-intron (ENSMUSG00000114697.1, intron 2 of 6) 27806 ENSMUSG00000114697.1 ENSMUSG00000114697 ENSMUST00000225163 Gm30806 lincRNA Interval_49073 chr13 107726633 107727174 + 0 NA exon (ENSMUSG00000032846.10, exon 15 of 15) protein_coding-exon (ENSMUSG00000032846.10, exon 15 of 15) 39506 ENSMUSG00000102000.6 ENSMUSG00000102000 ENSMUST00000188490 1700006H21Rik lincRNA Interval_32199 chr11 106076155 106077020 + 0 NA Intergenic Intergenic -10282 ENSMUSG00000085255.1 ENSMUSG00000085255 ENSMUST00000140736 Taco1os antisense Interval_33349 chr11 116062743 116062950 + 0 NA intron (ENSMUSG00000057948.12, intron 31 of 31) protein_coding-intron (ENSMUSG00000057948.12, intron 32 of 32) 14744 ENSMUSG00000057948.12 ENSMUSG00000057948 ENSMUST00000156545 Unc13d protein_coding Interval_123285 chr5 31115755 31117939 + 0 NA exon (ENSMUSG00000062077.14, exon 1 of 9) protein_coding-exon (ENSMUSG00000062077.14, exon 1 of 9) 113 ENSMUSG00000062077.14 ENSMUSG00000062077 ENSMUST00000202769 Trim54 protein_coding Interval_22413 chr11 9803724 9803985 + 0 NA Intergenic Intergenic -66233 ENSMUSG00000081629.1 ENSMUSG00000081629 ENSMUST00000117907 Eif3s6-ps1 processed_pseudogene Interval_47194 chr13 77689990 77690203 + 0 NA Intergenic Intergenic -11937 ENSMUSG00000064138.14 ENSMUSG00000064138 ENSMUST00000224013 Fam172a protein_coding Interval_160576 chr8 110805660 110806778 + 0 NA promoter-TSS (ENSMUSG00000031750.15) protein_coding-promoter-TSS (ENSMUSG00000031750.15) 581 ENSMUSG00000085068.1 ENSMUSG00000085068 ENSMUST00000157018 Gm15895 antisense Interval_85440 chr19 26296179 26296574 + 0 NA intron (ENSMUSG00000118005.1, intron 3 of 4) lincRNA-intron (ENSMUSG00000118005.1, intron 3 of 4) 12331 ENSMUSG00000118005.1 ENSMUSG00000118005 ENSMUST00000236317 Gm50377 lincRNA Interval_106365 chr3 95663383 95665271 + 0 NA Intergenic Intergenic 5470 ENSMUSG00000038612.16 ENSMUSG00000038612 ENSMUST00000178686 Mcl1 protein_coding Interval_63373 chr15 100664429 100667175 + 0 NA intron (ENSMUSG00000098112.8, intron 1 of 9) protein_coding-intron (ENSMUSG00000098112.8, intron 1 of 3) 3703 ENSMUSG00000098112.8 ENSMUSG00000098112 ENSMUST00000183193 Bin2 protein_coding Interval_140782 chr6 121315412 121316465 + 0 NA intron (ENSMUSG00000030108.14, intron 2 of 4) protein_coding-intron (ENSMUSG00000030108.14, intron 2 of 14) 9738 ENSMUSG00000078042.1 ENSMUSG00000078042 ENSMUST00000104848 Gm24855 miRNA Interval_166001 chr9 55313936 55314172 + 0 NA intron (ENSMUSG00000032311.17, intron 4 of 4) protein_coding-intron (ENSMUSG00000032311.17, intron 2 of 8) 8766 ENSMUSG00000082744.1 ENSMUSG00000082744 ENSMUST00000117617 Gm15625 processed_pseudogene Interval_116182 chr4 108435327 108435933 + 0 NA Intergenic Intergenic 15712 ENSMUSG00000083255.1 ENSMUSG00000083255 ENSMUST00000122349 Gm12738 processed_pseudogene Interval_101763 chr3 9461729 9462019 + 0 NA intron (ENSMUSG00000040209.12, intron 3 of 9) protein_coding-intron (ENSMUSG00000040209.12, intron 4 of 8) -34294 ENSMUSG00000103485.1 ENSMUSG00000103485 ENSMUST00000192900 Gm38001 TEC Interval_138631 chr6 90561073 90561688 + 0 NA intron (ENSMUSG00000030088.15, intron 4 of 22) protein_coding-intron (ENSMUSG00000030088.15, intron 4 of 22) 10532 ENSMUSG00000030088.15 ENSMUSG00000030088 ENSMUST00000137669 Aldh1l1 protein_coding Interval_87318 chr19 47644449 47644655 + 0 NA exon (ENSMUSG00000025060.15, exon 18 of 18) protein_coding-exon (ENSMUSG00000025060.15, exon 18 of 18) 16904 ENSMUSG00000025060.15 ENSMUSG00000025060 ENSMUST00000147841 Slk protein_coding Interval_46546 chr13 67002050 67002584 + 0 NA intron (ENSMUSG00000114362.1, intron 6 of 8) antisense-intron (ENSMUSG00000114362.1, intron 6 of 8) 5276 ENSMUSG00000114362.1 ENSMUSG00000114362 ENSMUST00000224762 4933433G19Rik antisense Interval_15634 chr10 52512131 52512427 + 0 NA Intergenic Intergenic 2498 ENSMUSG00000112464.1 ENSMUSG00000112464 ENSMUST00000217713 Gm47609 processed_pseudogene Interval_144856 chr7 28635349 28635830 + 0 NA intron (ENSMUSG00000108905.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000108905.1, intron 1 of 1) -4522 ENSMUSG00000037469.11 ENSMUSG00000037469 ENSMUST00000162880 Acp7 protein_coding Interval_150325 chr7 109609693 109610570 + 0 NA intron (ENSMUSG00000031024.13, intron 2 of 2) protein_coding-intron (ENSMUSG00000031024.13, intron 1 of 19) 6622 ENSMUSG00000031024.13 ENSMUSG00000031024 ENSMUST00000208734 Denn2b protein_coding Interval_158280 chr8 80798762 80799779 + 0 NA intron (ENSMUSG00000031714.9, intron 2 of 2) protein_coding-intron (ENSMUSG00000031714.9, intron 2 of 9) 28579 ENSMUSG00000109584.1 ENSMUSG00000109584 ENSMUST00000210546 Gm7997 processed_pseudogene Interval_106029 chr3 90873024 90873253 + 0 NA Intergenic Intergenic -24884 ENSMUSG00000106174.1 ENSMUSG00000106174 ENSMUST00000200121 Gm43235 unprocessed_pseudogene Interval_117242 chr4 120889202 120889995 + 0 NA intron (ENSMUSG00000032890.17, intron 5 of 5) protein_coding-intron (ENSMUSG00000032890.17, intron 7 of 7) -11625 ENSMUSG00000082200.1 ENSMUSG00000082200 ENSMUST00000118758 Gm12871 processed_pseudogene Interval_21536 chr10 129356442 129357198 + 0 NA Intergenic Intergenic 7970 ENSMUSG00000095075.2 ENSMUSG00000095075 ENSMUST00000077024 Olfr782 protein_coding Interval_172350 chrX 13329434 13330233 + 0 NA Intergenic Intergenic -2814 ENSMUSG00000080914.1 ENSMUSG00000080914 ENSMUST00000117402 Gm7129 processed_pseudogene Interval_33250 chr11 115473603 115474238 + 0 NA TTS (ENSMUSG00000045775.15) protein_coding-TTS (ENSMUSG00000045775.15) -2034 ENSMUSG00000057219.11 ENSMUSG00000057219 ENSMUST00000140181 Armc7 protein_coding Interval_74909 chr17 57224213 57224429 + 0 NA exon (ENSMUSG00000024164.15, exon 9 of 41) protein_coding-exon (ENSMUSG00000024164.15, exon 9 of 41) -1494 ENSMUSG00000024164.15 ENSMUSG00000024164 ENSMUST00000176457 C3 protein_coding Interval_4739 chr1 78189248 78190180 + 0 NA intron (ENSMUSG00000004872.15, intron 4 of 4) protein_coding-intron (ENSMUSG00000004872.15, intron 4 of 8) 7399 ENSMUSG00000004872.15 ENSMUSG00000004872 ENSMUST00000172555 Pax3 protein_coding Interval_150056 chr7 105448636 105449152 + 0 NA intron (ENSMUSG00000030898.15, intron 4 of 4) protein_coding-intron (ENSMUSG00000030898.15, intron 4 of 4) 23077 ENSMUSG00000030898.15 ENSMUSG00000030898 ENSMUST00000181339 Cckbr protein_coding Interval_98587 chr2 153414632 153415436 + 0 NA TTS (ENSMUSG00000082283.1) processed_pseudogene-TTS (ENSMUSG00000082283.1) 1185 ENSMUSG00000082283.1 ENSMUSG00000082283 ENSMUST00000119815 Gm14472 processed_pseudogene Interval_173630 chrX 101273356 101274708 + 0 NA promoter-TSS (ENSMUSG00000079487.11) protein_coding-promoter-TSS (ENSMUSG00000079487.11) -5009 ENSMUSG00000092463.1 ENSMUSG00000092463 ENSMUST00000117736 Gm20489 protein_coding Interval_76586 chr17 81788440 81788713 + 0 NA Intergenic Intergenic 3357 ENSMUSG00000097897.1 ENSMUSG00000097897 ENSMUST00000181557 Rpl31-ps25 processed_pseudogene Interval_4834 chr1 80033473 80034045 + 0 NA Intergenic Intergenic -64863 ENSMUSG00000099753.1 ENSMUSG00000099753 ENSMUST00000186421 Gm28058 processed_pseudogene Interval_136521 chr6 55133355 55133599 + 0 NA promoter-TSS (ENSMUSG00000003476.16) protein_coding-promoter-TSS (ENSMUSG00000003476.16) -15564 ENSMUSG00000003476.16 ENSMUSG00000003476 ENSMUST00000169777 Crhr2 protein_coding Interval_56838 chr14 122362469 122363538 + 0 NA intron (ENSMUSG00000025545.10, intron 2 of 7) protein_coding-intron (ENSMUSG00000025545.10, intron 2 of 7) 25157 ENSMUSG00000095311.1 ENSMUSG00000095311 ENSMUST00000175481 Gm25464 snRNA Interval_34853 chr12 12722904 12724288 + 0 NA exon (ENSMUSG00000113009.1, exon 1 of 1) TEC-exon (ENSMUSG00000113009.1, exon 1 of 1) 735 ENSMUSG00000113009.1 ENSMUSG00000113009 ENSMUST00000222770 3732407C23Rik TEC Interval_59174 chr15 46326614 46327613 + 0 NA intron (ENSMUSG00000099751.6, intron 2 of 6) lincRNA-intron (ENSMUSG00000099751.6, intron 1 of 3) 2528 ENSMUSG00000099751.6 ENSMUSG00000099751 ENSMUST00000189172 1700022A22Rik lincRNA Interval_109329 chr3 139017763 139018064 + 0 NA intron (ENSMUSG00000028149.12, intron 3 of 12) protein_coding-intron (ENSMUSG00000028149.12, intron 3 of 13) -39832 ENSMUSG00000104724.1 ENSMUSG00000104724 ENSMUST00000198292 Gm43162 TEC Interval_68521 chr16 78349643 78351436 + 0 NA intron (ENSMUSG00000022865.14, intron 7 of 7) protein_coding-intron (ENSMUSG00000022865.14, intron 7 of 7) -7071 ENSMUSG00000116707.1 ENSMUSG00000116707 ENSMUST00000232286 Gm49590 TEC Interval_86004 chr19 34862458 34862660 + 0 NA intron (ENSMUSG00000033610.16, intron 1 of 6) protein_coding-intron (ENSMUSG00000033610.16, intron 1 of 6) 15294 ENSMUSG00000033610.16 ENSMUSG00000033610 ENSMUST00000237577 Pank1 protein_coding Interval_117398 chr4 123464180 123464418 + 0 NA intron (ENSMUSG00000028649.21, intron 39 of 97) protein_coding-intron (ENSMUSG00000028649.21, intron 35 of 92) -25932 ENSMUSG00000089588.1 ENSMUSG00000089588 ENSMUST00000158963 Gm23548 misc_RNA Interval_27984 chr11 71914829 71916192 + 0 NA Intergenic Intergenic 24612 ENSMUSG00000085528.1 ENSMUSG00000085528 ENSMUST00000128489 4930401O10Rik lincRNA Interval_14579 chr10 36492666 36493011 + 0 NA Intergenic Intergenic -14051 ENSMUSG00000044499.11 ENSMUSG00000044499 ENSMUST00000171521 Hs3st5 protein_coding Interval_10485 chr1 171262846 171263218 + 0 NA Intergenic Intergenic -7307 ENSMUSG00000052423.14 ENSMUSG00000052423 ENSMUST00000132890 B4galt3 protein_coding Interval_56255 chr14 115047680 115049727 + 0 NA Intergenic Intergenic 4276 ENSMUSG00000076062.1 ENSMUSG00000076062 ENSMUST00000102108 Mir92-1 miRNA Interval_112880 chr4 45763140 45764160 + 0 NA intron (ENSMUSG00000085876.1, intron 1 of 2) processed_transcript-intron (ENSMUSG00000085876.1, intron 1 of 2) 573 ENSMUSG00000085876.1 ENSMUSG00000085876 ENSMUST00000147231 Gm12409 processed_transcript Interval_172613 chrX 38431291 38431550 + 0 NA intron (ENSMUSG00000016534.15, intron 4 of 4) protein_coding-intron (ENSMUSG00000016534.15, intron 5 of 8) 24994 ENSMUSG00000016534.15 ENSMUSG00000016534 ENSMUST00000144663 Lamp2 protein_coding Interval_6421 chr1 107697052 107697341 + 0 NA Intergenic Intergenic 10188 ENSMUSG00000086161.1 ENSMUSG00000086161 ENSMUST00000153774 Gm15389 lincRNA Interval_114435 chr4 76500690 76501049 + 0 NA intron (ENSMUSG00000028399.18, intron 1 of 30) protein_coding-intron (ENSMUSG00000028399.18, intron 10 of 14) 49638 ENSMUSG00000110373.1 ENSMUSG00000110373 ENSMUST00000209960 Gm42303 antisense Interval_107086 chr3 103408902 103409495 + 0 NA Intergenic Intergenic 16265 ENSMUSG00000089029.1 ENSMUSG00000089029 ENSMUST00000158404 Gm25009 snoRNA Interval_157870 chr8 75093162 75094244 + 0 NA promoter-TSS (ENSMUSG00000005413.8) protein_coding-promoter-TSS (ENSMUSG00000005413.8) -3141 ENSMUSG00000005413.8 ENSMUSG00000005413 ENSMUST00000159631 Hmox1 protein_coding Interval_109812 chr3 147952582 147952889 + 0 NA Intergenic Intergenic -177509 ENSMUSG00000106285.1 ENSMUSG00000106285 ENSMUST00000196226 Gm43574 processed_transcript Interval_105537 chr3 87504484 87504775 + 0 NA Intergenic Intergenic -20949 ENSMUSG00000003382.18 ENSMUSG00000003382 ENSMUST00000152010 Etv3 protein_coding Interval_11617 chr1 183332835 183333168 + 0 NA intron (ENSMUSG00000056050.13, intron 14 of 23) protein_coding-intron (ENSMUSG00000056050.13, intron 13 of 22) 10888 ENSMUSG00000042901.10 ENSMUSG00000042901 ENSMUST00000195268 Aida protein_coding Interval_174515 chrX 155262040 155263286 + 0 NA exon (ENSMUSG00000025287.15, exon 1 of 15) protein_coding-exon (ENSMUSG00000025287.15, exon 1 of 15) 220 ENSMUSG00000025287.15 ENSMUSG00000025287 ENSMUST00000126200 Acot9 protein_coding Interval_15584 chr10 51861086 51861370 + 0 NA Intergenic Intergenic -27397 ENSMUSG00000088198.1 ENSMUSG00000088198 ENSMUST00000157573 Gm23906 snoRNA Interval_85542 chr19 28263315 28263641 + 0 NA TTS (ENSMUSG00000052942.13) protein_coding-TTS (ENSMUSG00000052942.13) 36947 ENSMUSG00000052942.13 ENSMUSG00000052942 ENSMUST00000161328 Glis3 protein_coding Interval_138700 chr6 91271649 91272164 + 0 NA exon (ENSMUSG00000064080.12, exon 18 of 18) protein_coding-exon (ENSMUSG00000064080.12, exon 18 of 18) 59079 ENSMUSG00000064080.12 ENSMUSG00000064080 ENSMUST00000137029 Fbln2 protein_coding Interval_64913 chr16 17167380 17167575 + 0 NA intron (ENSMUSG00000038965.17, intron 1 of 2) protein_coding-intron (ENSMUSG00000038965.17, intron 2 of 3) 20540 ENSMUSG00000041774.16 ENSMUSG00000041774 ENSMUST00000231539 Ydjc protein_coding Interval_118502 chr4 132137055 132137612 + 0 NA intron (ENSMUSG00000050511.1, intron 1 of 2) protein_coding-intron (ENSMUSG00000050511.1, intron 1 of 2) 7153 ENSMUSG00000050511.1 ENSMUSG00000050511 ENSMUST00000056336 Oprd1 protein_coding Interval_156796 chr8 60397608 60398503 + 0 NA Intergenic Intergenic 105143 ENSMUSG00000070023.5 ENSMUSG00000070023 ENSMUST00000093494 Gm10283 protein_coding Interval_98164 chr2 148986031 148986482 + 0 NA Intergenic Intergenic 16995 ENSMUSG00000063507.5 ENSMUSG00000063507 ENSMUST00000109942 Gm1330 protein_coding Interval_26593 chr11 59090830 59091268 + 0 NA intron (ENSMUSG00000061462.18, intron 18 of 114) protein_coding-intron (ENSMUSG00000061462.18, intron 18 of 89) 45326 ENSMUSG00000061462.18 ENSMUSG00000061462 ENSMUST00000133040 Obscn protein_coding Interval_136166 chr6 51641047 51641351 + 0 NA Intergenic Intergenic 19567 ENSMUSG00000094528.1 ENSMUSG00000094528 ENSMUST00000175195 Gm22914 miRNA Interval_142387 chr6 141335754 141336652 + 0 NA intron (ENSMUSG00000041741.10, intron 1 of 5) protein_coding-intron (ENSMUSG00000041741.10, intron 1 of 15) -4350 ENSMUSG00000107456.1 ENSMUSG00000107456 ENSMUST00000203920 Gm10400 TEC Interval_157028 chr8 64618742 64619351 + 0 NA intron (ENSMUSG00000037852.8, intron 2 of 2) protein_coding-intron (ENSMUSG00000037852.8, intron 2 of 8) 2951 ENSMUSG00000037852.8 ENSMUSG00000037852 ENSMUST00000211312 Cpe protein_coding Interval_139796 chr6 108776803 108777948 + 0 NA Intergenic Intergenic -17522 ENSMUSG00000030105.8 ENSMUSG00000030105 ENSMUST00000204483 Arl8b protein_coding Interval_155282 chr8 30669202 30670135 + 0 NA Intergenic Intergenic 101275 ENSMUSG00000097044.1 ENSMUSG00000097044 ENSMUST00000180571 4933433F19Rik lincRNA Interval_151851 chr7 127117968 127118512 + 0 NA exon (ENSMUSG00000030674.5, exon 2 of 3) protein_coding-exon (ENSMUSG00000030674.5, exon 2 of 3) 3778 ENSMUSG00000030674.5 ENSMUSG00000030674 ENSMUST00000142403 Qprt protein_coding Interval_120113 chr4 141916549 141916781 + 0 NA intron (ENSMUSG00000051435.11, intron 4 of 4) protein_coding-intron (ENSMUSG00000051435.11, intron 7 of 7) 5761 ENSMUSG00000051435.11 ENSMUSG00000051435 ENSMUST00000125293 Fhad1 protein_coding Interval_46487 chr13 66541733 66543263 + 0 NA Intergenic Intergenic 8473 ENSMUSG00000114685.1 ENSMUSG00000114685 ENSMUST00000224365 Gm48351 processed_pseudogene Interval_134512 chr6 29246780 29247186 + 0 NA Intergenic Intergenic 12549 ENSMUSG00000089289.1 ENSMUSG00000089289 ENSMUST00000158664 Gm26021 snoRNA Interval_11463 chr1 182028418 182029043 + 0 NA Intergenic Intergenic -21044 ENSMUSG00000102760.1 ENSMUSG00000102760 ENSMUST00000191734 Gm37258 TEC Interval_124108 chr5 38361248 38361447 + 0 NA intron (ENSMUSG00000005107.13, intron 13 of 13) protein_coding-intron (ENSMUSG00000005107.13, intron 10 of 10) 16912 ENSMUSG00000106932.1 ENSMUSG00000106932 ENSMUST00000201983 4930487D11Rik lincRNA Interval_13177 chr10 12854050 12854361 + 0 NA intron (ENSMUSG00000019820.11, intron 2 of 17) protein_coding-intron (ENSMUSG00000019820.11, intron 1 of 73) 8117 ENSMUSG00000112698.1 ENSMUSG00000112698 ENSMUST00000219425 Gm7525 processed_pseudogene Interval_72151 chr17 28297139 28297718 + 0 NA TTS (ENSMUSG00000002250.16) protein_coding-TTS (ENSMUSG00000002250.16) -16149 ENSMUSG00000007570.16 ENSMUSG00000007570 ENSMUST00000156569 Fance protein_coding Interval_112122 chr4 34832525 34833234 + 0 NA intron (ENSMUSG00000039967.14, intron 4 of 7) protein_coding-intron (ENSMUSG00000039967.14, intron 4 of 7) -10106 ENSMUSG00000082367.1 ENSMUSG00000082367 ENSMUST00000122250 Gm12363 processed_pseudogene Interval_110370 chr3 157522700 157522920 + 0 NA Intergenic Intergenic 11280 ENSMUSG00000105834.1 ENSMUSG00000105834 ENSMUST00000196791 4930592C13Rik antisense Interval_64195 chr16 9009184 9010234 + 0 NA Intergenic Intergenic -13313 ENSMUSG00000116352.1 ENSMUSG00000116352 ENSMUST00000229458 Gm49447 processed_pseudogene Interval_163530 chr9 21929152 21929674 + 0 NA exon (ENSMUSG00000006241.16, exon 3 of 13) protein_coding-exon (ENSMUSG00000006241.16, exon 3 of 13) 1801 ENSMUSG00000006241.16 ENSMUSG00000006241 ENSMUST00000214734 Ccdc159 protein_coding Interval_11079 chr1 179209075 179209468 + 0 NA intron (ENSMUSG00000055067.15, intron 5 of 11) protein_coding-intron (ENSMUSG00000055067.15, intron 2 of 8) -291657 ENSMUSG00000089713.1 ENSMUSG00000089713 ENSMUST00000162545 Gm16564 antisense Interval_73068 chr17 34591958 34593354 + 0 NA promoter-TSS (ENSMUSG00000034673.14) protein_coding-promoter-TSS (ENSMUSG00000034673.14) -78 ENSMUSG00000034673.14 ENSMUSG00000034673 ENSMUST00000173229 Pbx2 protein_coding Interval_75039 chr17 61947978 61948512 + 0 NA Intergenic Intergenic 75870 ENSMUSG00000117160.1 ENSMUSG00000117160 ENSMUST00000232834 Gm49859 processed_pseudogene Interval_120954 chr4 151902812 151903430 + 0 NA Intergenic Intergenic 13293 ENSMUSG00000104142.1 ENSMUSG00000104142 ENSMUST00000191938 Gm37141 TEC Interval_135047 chr6 34941526 34942603 + 0 NA Intergenic Intergenic 21060 ENSMUSG00000029848.11 ENSMUSG00000029848 ENSMUST00000114997 Stra8 protein_coding Interval_172012 chr9 123496390 123497439 + 0 NA intron (ENSMUSG00000025239.3, intron 1 of 3) protein_coding-intron (ENSMUSG00000025239.3, intron 1 of 7) 16304 ENSMUSG00000025239.3 ENSMUSG00000025239 ENSMUST00000214309 Limd1 protein_coding Interval_16233 chr10 61591197 61592046 + 0 NA exon (ENSMUSG00000101792.1, exon 1 of 1) processed_transcript-exon (ENSMUSG00000101792.1, exon 1 of 1) -3871 ENSMUSG00000020090.7 ENSMUSG00000020090 ENSMUST00000020287 Npffr1 protein_coding Interval_31997 chr11 104354655 104354854 + 0 NA intron (ENSMUSG00000018412.16, intron 6 of 13) protein_coding-intron (ENSMUSG00000018412.16, intron 7 of 14) 70546 ENSMUSG00000106014.1 ENSMUSG00000106014 ENSMUST00000195891 Gm47315 miRNA Interval_138193 chr6 86107289 86107746 + 0 NA intron (ENSMUSG00000030000.10, intron 12 of 12) protein_coding-intron (ENSMUSG00000030000.10, intron 12 of 15) -20437 ENSMUSG00000107842.1 ENSMUSG00000107842 ENSMUST00000203624 Gm44089 antisense Interval_93622 chr2 75062565 75065266 + 0 NA Intergenic Intergenic 73883 ENSMUSG00000087333.1 ENSMUSG00000087333 ENSMUST00000143898 Gm13652 lincRNA Interval_169286 chr9 96158552 96158874 + 0 NA intron (ENSMUSG00000041440.18, intron 10 of 15) protein_coding-intron (ENSMUSG00000041440.18, intron 11 of 15) -12203 ENSMUSG00000041440.18 ENSMUSG00000041440 ENSMUST00000189249 Gk5 protein_coding Interval_53025 chr14 53616240 53616440 + 0 NA promoter-TSS (ENSMUSG00000096656.6) TR_V_gene-promoter-TSS (ENSMUSG00000096656.6) 25 ENSMUSG00000096656.6 ENSMUSG00000096656 ENSMUST00000180972 Trav12-2 TR_V_gene Interval_167987 chr9 75282761 75283274 + 0 NA intron (ENSMUSG00000033590.8, intron 26 of 29) protein_coding-intron (ENSMUSG00000033590.8, intron 25 of 40) 31854 ENSMUSG00000111348.1 ENSMUSG00000111348 ENSMUST00000216737 Gm19531 antisense Interval_112290 chr4 40142636 40143931 + 0 NA exon (ENSMUSG00000028405.9, exon 1 of 21) protein_coding-exon (ENSMUSG00000028405.9, exon 1 of 21) -20436 ENSMUSG00000028405.9 ENSMUSG00000028405 ENSMUST00000135787 Aco1 protein_coding Interval_55126 chr14 78368413 78368770 + 0 NA Intergenic Intergenic -57251 ENSMUSG00000092774.1 ENSMUSG00000092774 ENSMUST00000175033 Gm26197 rRNA Interval_100636 chr2 170631592 170632158 + 0 NA Intergenic Intergenic -29858 ENSMUSG00000043583.1 ENSMUSG00000043583 ENSMUST00000062355 4930470P17Rik protein_coding Interval_28821 chr11 78528055 78528361 + 0 NA intron (ENSMUSG00000017615.12, intron 5 of 6) protein_coding-intron (ENSMUSG00000017615.12, intron 5 of 6) 8124 ENSMUSG00000017615.12 ENSMUSG00000017615 ENSMUST00000108277 Tnfaip1 protein_coding Interval_8695 chr1 148693682 148694123 + 0 NA Intergenic Intergenic -42768 ENSMUSG00000101735.1 ENSMUSG00000101735 ENSMUST00000187360 Gm18505 processed_pseudogene Interval_147345 chr7 66010370 66011069 + 0 NA intron (ENSMUSG00000030513.14, intron 11 of 19) protein_coding-intron (ENSMUSG00000030513.14, intron 13 of 21) -32883 ENSMUSG00000108793.1 ENSMUSG00000108793 ENSMUST00000206065 Gm45213 protein_coding Interval_164747 chr9 41028037 41029810 + 0 NA intron (ENSMUSG00000032020.15, intron 8 of 13) protein_coding-intron (ENSMUSG00000032020.15, intron 8 of 13) -24337 ENSMUSG00000032021.14 ENSMUSG00000032021 ENSMUST00000034519 Crtam protein_coding Interval_11710 chr1 184822487 184823042 + 0 NA promoter-TSS (ENSMUSG00000088559.1) miRNA-promoter-TSS (ENSMUSG00000088559.1) -276 ENSMUSG00000088559.1 ENSMUSG00000088559 ENSMUST00000157934 Mir1981 miRNA Interval_135218 chr6 37610496 37611583 + 0 NA Intergenic Intergenic 69625 ENSMUSG00000106889.1 ENSMUSG00000106889 ENSMUST00000201541 Gm7463 processed_pseudogene Interval_106648 chr3 98085487 98086992 + 0 NA intron (ENSMUSG00000027878.11, intron 5 of 7) protein_coding-intron (ENSMUSG00000027878.11, intron 5 of 33) -35349 ENSMUSG00000106427.1 ENSMUSG00000106427 ENSMUST00000200084 Gm42820 TEC Interval_108339 chr3 124487866 124488124 + 0 NA Intergenic Intergenic -13579 ENSMUSG00000077726.1 ENSMUSG00000077726 ENSMUST00000104538 Gm22900 snoRNA Interval_173943 chrX 114474191 114474573 + 0 NA promoter-TSS (ENSMUSG00000025597.13) protein_coding-promoter-TSS (ENSMUSG00000025597.13) -222 ENSMUSG00000025597.13 ENSMUSG00000025597 ENSMUST00000133447 Klhl4 protein_coding Interval_168044 chr9 75564616 75565523 + 0 NA TTS (ENSMUSG00000032186.15) protein_coding-TTS (ENSMUSG00000032186.15) -5412 ENSMUSG00000058587.9 ENSMUSG00000058587 ENSMUST00000217459 Tmod3 protein_coding Interval_47557 chr13 88452973 88453158 + 0 NA Intergenic Intergenic -25515 ENSMUSG00000057685.8 ENSMUSG00000057685 ENSMUST00000079153 Gm8526 processed_pseudogene Interval_129322 chr5 119085375 119087374 + 0 NA Intergenic Intergenic -21860 ENSMUSG00000100573.1 ENSMUSG00000100573 ENSMUST00000190550 1700081H04Rik lincRNA Interval_76548 chr17 80969457 80970536 + 0 NA intron (ENSMUSG00000024245.4, intron 1 of 3) protein_coding-intron (ENSMUSG00000024245.4, intron 1 of 3) 25364 ENSMUSG00000024245.4 ENSMUSG00000024245 ENSMUST00000025092 Tmem178 protein_coding Interval_79424 chr18 31818699 31820506 + 0 NA TTS (ENSMUSG00000091561.3) processed_pseudogene-TTS (ENSMUSG00000091561.3) 917 ENSMUSG00000091561.3 ENSMUSG00000091561 ENSMUST00000165131 Gm6665 processed_pseudogene Interval_77302 chr17 87918701 87919181 + 0 NA Intergenic Intergenic -2036 ENSMUSG00000093922.1 ENSMUSG00000093922 ENSMUST00000179601 Rpl36-ps4 protein_coding Interval_142763 chr6 145440624 145440850 + 0 NA intron (ENSMUSG00000054966.13, intron 1 of 8) protein_coding-intron (ENSMUSG00000054966.13, intron 1 of 8) -1019 ENSMUSG00000086722.1 ENSMUSG00000086722 ENSMUST00000141390 Gm15499 antisense Interval_138697 chr6 91245796 91246033 + 0 NA intron (ENSMUSG00000064080.12, intron 2 of 16) protein_coding-intron (ENSMUSG00000064080.12, intron 2 of 17) 33087 ENSMUSG00000064080.12 ENSMUSG00000064080 ENSMUST00000137029 Fbln2 protein_coding Interval_99645 chr2 163894014 163895403 + 0 NA intron (ENSMUSG00000035226.5, intron 1 of 5) protein_coding-intron (ENSMUSG00000035226.5, intron 1 of 5) 23975 ENSMUSG00000035226.5 ENSMUSG00000035226 ENSMUST00000044734 Rims4 protein_coding Interval_58021 chr15 26342194 26342476 + 0 NA intron (ENSMUSG00000022269.13, intron 2 of 2) protein_coding-intron (ENSMUSG00000022269.13, intron 2 of 3) -45384 ENSMUSG00000022269.13 ENSMUSG00000022269 ENSMUST00000155819 Marchf11 protein_coding Interval_102465 chr3 27040508 27040818 + 0 NA Intergenic Intergenic 7290 ENSMUSG00000102908.1 ENSMUSG00000102908 ENSMUST00000193221 Gm7558 processed_pseudogene Interval_112339 chr4 40680240 40681038 + 0 NA Intergenic Intergenic 2307 ENSMUSG00000081720.1 ENSMUSG00000081720 ENSMUST00000117626 Gm12391 processed_pseudogene Interval_91207 chr2 35919960 35920685 + 0 NA intron (ENSMUSG00000026885.13, intron 2 of 7) protein_coding-intron (ENSMUSG00000026885.13, intron 3 of 9) 32092 ENSMUSG00000026885.13 ENSMUSG00000026885 ENSMUST00000162172 Ttll11 protein_coding Interval_163742 chr9 25163468 25163837 + 0 NA intron (ENSMUSG00000100002.2, intron 1 of 2) lincRNA-intron (ENSMUSG00000100002.2, intron 1 of 2) 11538 ENSMUSG00000100002.2 ENSMUSG00000100002 ENSMUST00000186170 Gm29642 lincRNA Interval_161750 chr8 122543558 122543916 + 0 NA intron (ENSMUSG00000014444.17, intron 1 of 50) protein_coding-intron (ENSMUSG00000014444.17, intron 1 of 50) 7592 ENSMUSG00000014444.17 ENSMUSG00000014444 ENSMUST00000148497 Piezo1 protein_coding Interval_166185 chr9 57318302 57318842 + 0 NA Intergenic Intergenic 10843 ENSMUSG00000111457.1 ENSMUSG00000111457 ENSMUST00000214851 Gm18996 processed_pseudogene Interval_68674 chr16 84526606 84528495 + 0 NA Intergenic Intergenic 12181 ENSMUSG00000110358.1 ENSMUSG00000110358 ENSMUST00000210306 A730009L09Rik protein_coding Interval_113732 chr4 57895843 57896031 + 0 NA exon (ENSMUSG00000038729.24, exon 4 of 4) protein_coding-exon (ENSMUSG00000038729.24, exon 4 of 4) -18442 ENSMUSG00000096195.1 ENSMUSG00000096195 ENSMUST00000179236 Gm26138 snRNA Interval_114972 chr4 87853984 87854189 + 0 NA intron (ENSMUSG00000028496.17, intron 2 of 4) protein_coding-intron (ENSMUSG00000028496.17, intron 4 of 10) -47763 ENSMUSG00000028496.17 ENSMUSG00000028496 ENSMUST00000142454 Mllt3 protein_coding Interval_45218 chr13 53248227 53250330 + 0 NA intron (ENSMUSG00000021464.14, intron 1 of 8) protein_coding-intron (ENSMUSG00000021464.14, intron 1 of 8) 26380 ENSMUSG00000021464.14 ENSMUSG00000021464 ENSMUST00000149299 Ror2 protein_coding Interval_120268 chr4 145056855 145057529 + 0 NA intron (ENSMUSG00000020220.16, intron 43 of 51) protein_coding-intron (ENSMUSG00000020220.16, intron 59 of 67) 98294 ENSMUSG00000020220.16 ENSMUSG00000020220 ENSMUST00000132700 Vps13d protein_coding Interval_42754 chr13 19090544 19091257 + 0 NA intron (ENSMUSG00000021314.13, intron 5 of 20) protein_coding-intron (ENSMUSG00000021314.13, intron 5 of 20) -19325 ENSMUSG00000113378.1 ENSMUSG00000113378 ENSMUST00000220695 Gm47660 processed_pseudogene Interval_25482 chr11 48855377 48857604 + 0 NA Intergenic Intergenic -2997 ENSMUSG00000086245.1 ENSMUSG00000086245 ENSMUST00000156882 Gm16170 antisense Interval_161167 chr8 117978036 117978838 + 0 NA Intergenic Intergenic -142517 ENSMUSG00000065028.1 ENSMUSG00000065028 ENSMUST00000083094 Gm25200 snoRNA Interval_115136 chr4 91344950 91345837 + 0 NA intron (ENSMUSG00000008489.18, intron 1 of 7) protein_coding-intron (ENSMUSG00000008489.18, intron 1 of 6) 11289 ENSMUSG00000008489.18 ENSMUSG00000008489 ENSMUST00000176151 Elavl2 protein_coding Interval_116819 chr4 117436733 117437719 + 0 NA intron (ENSMUSG00000028677.19, intron 2 of 2) protein_coding-intron (ENSMUSG00000028677.19, intron 2 of 14) -8724 ENSMUSG00000086876.1 ENSMUSG00000086876 ENSMUST00000136115 Gm12828 antisense Interval_56821 chr14 122270064 122272176 + 0 NA intron (ENSMUSG00000025545.10, intron 1 of 7) protein_coding-intron (ENSMUSG00000025545.10, intron 1 of 7) 13079 ENSMUSG00000025545.10 ENSMUSG00000025545 ENSMUST00000226136 Clybl protein_coding Interval_139875 chr6 112206858 112207417 + 0 NA Intergenic Intergenic -3571 ENSMUSG00000100219.1 ENSMUSG00000100219 ENSMUST00000186102 1700054K19Rik lincRNA Interval_115264 chr4 94987557 94988243 + 0 NA intron (ENSMUSG00000086251.1, intron 2 of 4) antisense-intron (ENSMUSG00000086251.1, intron 2 of 4) 8697 ENSMUSG00000086251.1 ENSMUSG00000086251 ENSMUST00000149367 Gm12694 antisense Interval_166746 chr9 62387406 62387733 + 0 NA Intergenic Intergenic 45105 ENSMUSG00000032249.14 ENSMUSG00000032249 ENSMUST00000145679 Anp32a protein_coding Interval_66699 chr16 36417573 36418287 + 0 NA Intergenic Intergenic -1157 ENSMUSG00000094139.1 ENSMUSG00000094139 ENSMUST00000180060 Gm22263 snRNA Interval_33872 chr11 119105391 119106224 + 0 NA TTS (ENSMUSG00000086306.1) lincRNA-TTS (ENSMUSG00000086306.1) 5618 ENSMUSG00000086306.1 ENSMUSG00000086306 ENSMUST00000156576 Gm11754 lincRNA Interval_136426 chr6 54351874 54352199 + 0 NA intron (ENSMUSG00000073067.10, intron 3 of 13) processed_transcript-intron (ENSMUSG00000073067.10, intron 3 of 13) -24695 ENSMUSG00000073067.10 ENSMUSG00000073067 ENSMUST00000135612 9130019P16Rik processed_transcript Interval_89377 chr2 20186138 20186487 + 0 NA intron (ENSMUSG00000036617.17, intron 2 of 7) protein_coding-intron (ENSMUSG00000036617.17, intron 2 of 7) 49752 ENSMUSG00000081128.1 ENSMUSG00000081128 ENSMUST00000120816 Gm13328 processed_pseudogene Interval_141138 chr6 125204847 125205760 + 0 NA Intergenic Intergenic 3388 ENSMUSG00000107995.1 ENSMUSG00000107995 ENSMUST00000205145 Gm44487 processed_pseudogene Interval_132127 chr5 142858172 142858511 + 0 NA Intergenic Intergenic -5142 ENSMUSG00000082308.1 ENSMUSG00000082308 ENSMUST00000117498 Gm15770 processed_pseudogene Interval_94966 chr2 102231046 102231871 + 0 NA Intergenic Intergenic -21079 ENSMUSG00000081774.1 ENSMUSG00000081774 ENSMUST00000118901 Gm13866 processed_pseudogene Interval_24750 chr11 36654940 36656334 + 0 NA intron (ENSMUSG00000049336.16, intron 2 of 28) protein_coding-intron (ENSMUSG00000049336.16, intron 2 of 28) -67245 ENSMUSG00000065173.1 ENSMUSG00000065173 ENSMUST00000083239 Gm22127 snRNA Interval_26145 chr11 54743863 54745294 + 0 NA intron (ENSMUSG00000052298.12, intron 2 of 4) protein_coding-intron (ENSMUSG00000052298.12, intron 2 of 5) 2246 ENSMUSG00000082503.1 ENSMUSG00000082503 ENSMUST00000120487 Gm12229 processed_pseudogene Interval_154175 chr8 13213588 13214510 + 0 NA Intergenic Intergenic 13329 ENSMUSG00000099338.1 ENSMUSG00000099338 ENSMUST00000187595 2810030D12Rik bidirectional_promoter_lncRNA Interval_57537 chr15 12186970 12188336 + 0 NA Intergenic Intergenic 6506 ENSMUSG00000115017.1 ENSMUSG00000115017 ENSMUST00000228426 Gm2573 processed_pseudogene Interval_101722 chr3 9156349 9156549 + 0 NA Intergenic Intergenic 83682 ENSMUSG00000103011.1 ENSMUSG00000103011 ENSMUST00000193160 Gm8860 processed_pseudogene Interval_57293 chr15 8541627 8542912 + 0 NA Intergenic Intergenic -12678 ENSMUSG00000115577.1 ENSMUSG00000115577 ENSMUST00000228699 Gm49250 processed_pseudogene Interval_49190 chr13 109278665 109278869 + 0 NA intron (ENSMUSG00000021699.17, intron 1 of 14) protein_coding-intron (ENSMUSG00000021699.17, intron 1 of 14) -45977 ENSMUSG00000076946.2 ENSMUSG00000076946 ENSMUST00000103758 Mir582 miRNA Interval_48402 chr13 98814499 98815808 + 0 NA promoter-TSS (ENSMUSG00000041685.16) protein_coding-promoter-TSS (ENSMUSG00000041685.16) -1599 ENSMUSG00000114719.1 ENSMUSG00000114719 ENSMUST00000225468 Gm18134 processed_pseudogene Interval_71142 chr17 19885069 19885280 + 0 NA Intergenic Intergenic 46609 ENSMUSG00000093426.1 ENSMUSG00000093426 ENSMUST00000176763 Vmn2r-ps123 unprocessed_pseudogene Interval_140251 chr6 115803289 115805154 + 0 NA exon (ENSMUSG00000030319.8, exon 15 of 15) protein_coding-exon (ENSMUSG00000030319.8, exon 15 of 15) 3893 ENSMUSG00000064563.1 ENSMUSG00000064563 ENSMUST00000082629 Snora7a snoRNA Interval_8375 chr1 138504029 138505085 + 0 NA intron (ENSMUSG00000026393.10, intron 7 of 9) protein_coding-intron (ENSMUSG00000026393.10, intron 7 of 7) -11058 ENSMUSG00000099510.2 ENSMUSG00000099510 ENSMUST00000188729 Gm28501 antisense Interval_72575 chr17 30748925 30749429 + 0 NA exon (ENSMUSG00000033826.10, exon 1 of 1) protein_coding-exon (ENSMUSG00000033826.10, exon 1 of 1) 32952 ENSMUSG00000094785.1 ENSMUSG00000094785 ENSMUST00000083205 Gm24661 snRNA Interval_134659 chr6 30188955 30190279 + 0 NA Intergenic Intergenic 16724 ENSMUSG00000103108.2 ENSMUSG00000103108 ENSMUST00000194541 Rncr4 lincRNA Interval_103134 chr3 35768228 35768837 + 0 NA intron (ENSMUSG00000037400.17, intron 1 of 21) protein_coding-intron (ENSMUSG00000037400.17, intron 1 of 29) 33159 ENSMUSG00000064834.1 ENSMUSG00000064834 ENSMUST00000082900 Gm25696 snRNA Interval_2027 chr1 35978242 35980068 + 0 NA Intergenic Intergenic 7218 ENSMUSG00000102279.1 ENSMUSG00000102279 ENSMUST00000192572 Gm37146 lincRNA Interval_68124 chr16 65472473 65472696 + 0 NA Intergenic Intergenic 40447 ENSMUSG00000095094.1 ENSMUSG00000095094 ENSMUST00000102245 Gm23659 miRNA Interval_92064 chr2 52955038 52955498 + 0 NA intron (ENSMUSG00000036053.17, intron 1 of 26) protein_coding-intron (ENSMUSG00000036053.17, intron 1 of 26) 97408 ENSMUSG00000036053.17 ENSMUSG00000036053 ENSMUST00000050719 Fmnl2 protein_coding Interval_88073 chr19 58839237 58839505 + 0 NA intron (ENSMUSG00000025092.7, intron 2 of 6) protein_coding-intron (ENSMUSG00000025092.7, intron 1 of 11) -17250 ENSMUSG00000025092.7 ENSMUSG00000025092 ENSMUST00000237786 Hspa12a protein_coding Interval_83133 chr18 81924656 81925534 + 0 NA Intergenic Intergenic -8367 ENSMUSG00000117817.1 ENSMUSG00000117817 ENSMUST00000235452 Gm50292 lincRNA Interval_62716 chr15 96433930 96434229 + 0 NA intron (ENSMUSG00000033228.8, intron 1 of 7) protein_coding-intron (ENSMUSG00000033228.8, intron 4 of 14) 9976 ENSMUSG00000033228.8 ENSMUSG00000033228 ENSMUST00000227133 Scaf11 protein_coding Interval_75918 chr17 73047152 73047385 + 0 NA Intergenic Intergenic -18190 ENSMUSG00000117096.1 ENSMUSG00000117096 ENSMUST00000233236 Gm30420 lincRNA Interval_62982 chr15 98479857 98480063 + 0 NA TTS (ENSMUSG00000022991.5) protein_coding-TTS (ENSMUSG00000022991.5) 2761 ENSMUSG00000022991.5 ENSMUSG00000022991 ENSMUST00000023726 Lalba protein_coding Interval_116227 chr4 108869950 108870474 + 0 NA Intergenic Intergenic 12720 ENSMUSG00000028567.8 ENSMUSG00000028567 ENSMUST00000154017 Txndc12 protein_coding Interval_83921 chr19 5609289 5611011 + 0 NA promoter-TSS (ENSMUSG00000024926.10) protein_coding-promoter-TSS (ENSMUSG00000024926.10) -6184 ENSMUSG00000024926.10 ENSMUSG00000024926 ENSMUST00000236264 Kat5 protein_coding Interval_60171 chr15 66934033 66934242 + 0 NA TTS (ENSMUSG00000005125.13) protein_coding-TTS (ENSMUSG00000005125.13) 4530 ENSMUSG00000091479.1 ENSMUSG00000091479 ENSMUST00000170557 Gm17035 antisense Interval_74835 chr17 56792216 56792442 + 0 NA intron (ENSMUSG00000024206.15, intron 4 of 5) protein_coding-intron (ENSMUSG00000024206.15, intron 6 of 17) 22079 ENSMUSG00000090273.3 ENSMUSG00000090273 ENSMUST00000168666 Prr22 protein_coding Interval_143483 chr7 7265660 7265892 + 0 NA exon (ENSMUSG00000098900.2, exon 4 of 4) transcribed_unprocessed_pseudogene-exon (ENSMUSG00000098900.2, exon 4 of 4) 1500 ENSMUSG00000110105.1 ENSMUSG00000110105 ENSMUST00000209788 Gm45844 protein_coding Interval_17706 chr10 79668860 79670684 + 0 NA promoter-TSS (ENSMUSG00000020308.7) protein_coding-promoter-TSS (ENSMUSG00000020308.7) 362 ENSMUSG00000020308.7 ENSMUSG00000020308 ENSMUST00000220175 Tpgs1 protein_coding Interval_35755 chr12 28910741 28910936 + 0 NA intron (ENSMUSG00000113387.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000113387.1, intron 1 of 2) 609 ENSMUSG00000113387.1 ENSMUSG00000113387 ENSMUST00000221643 Gm31508 lincRNA Interval_22778 chr11 15393689 15394180 + 0 NA Intergenic Intergenic -18366 ENSMUSG00000064746.1 ENSMUSG00000064746 ENSMUST00000082812 Gm24707 snRNA Interval_172054 chr9 124088772 124089184 + 0 NA Intergenic Intergenic -12972 ENSMUSG00000049103.14 ENSMUSG00000049103 ENSMUST00000165984 Ccr2 protein_coding Interval_35991 chr12 33162654 33162900 + 0 NA intron (ENSMUSG00000020564.17, intron 2 of 12) protein_coding-intron (ENSMUSG00000020564.17, intron 1 of 2) -15181 ENSMUSG00000052125.16 ENSMUSG00000052125 ENSMUST00000172344 F730043M19Rik bidirectional_promoter_lncRNA Interval_21892 chr11 5040398 5041454 + 0 NA TTS (ENSMUSG00000009090.17) protein_coding-TTS (ENSMUSG00000009090.17) 2715 ENSMUSG00000088634.1 ENSMUSG00000088634 ENSMUST00000158009 Gm24958 snoRNA Interval_8105 chr1 135752659 135753231 + 0 NA TTS (ENSMUSG00000026421.14) protein_coding-TTS (ENSMUSG00000026421.14) -14189 ENSMUSG00000041801.5 ENSMUSG00000041801 ENSMUST00000136445 Phlda3 protein_coding Interval_59626 chr15 56702870 56703058 + 0 NA intron (ENSMUSG00000086541.8, intron 2 of 2) processed_transcript-intron (ENSMUSG00000086541.8, intron 1 of 2) -8425 ENSMUSG00000022367.7 ENSMUSG00000022367 ENSMUST00000050544 Has2 protein_coding Interval_70630 chr17 12534562 12535001 + 0 NA Intergenic Intergenic -27365 ENSMUSG00000023828.3 ENSMUSG00000023828 ENSMUST00000024595 Slc22a3 protein_coding Interval_132596 chr5 146629274 146630133 + 0 NA Intergenic Intergenic -29601 ENSMUSG00000105907.1 ENSMUSG00000105907 ENSMUST00000200363 Gm34333 lincRNA Interval_51209 chr14 25017581 25018358 + 0 NA Intergenic Intergenic -13128 ENSMUSG00000114416.1 ENSMUSG00000114416 ENSMUST00000224831 Gm47907 TEC Interval_144407 chr7 24971625 24972875 + 0 NA promoter-TSS (ENSMUSG00000003380.11) protein_coding-promoter-TSS (ENSMUSG00000003380.11) -23 ENSMUSG00000003380.11 ENSMUSG00000003380 ENSMUST00000205771 Rabac1 protein_coding Interval_56717 chr14 121597944 121599125 + 0 NA promoter-TSS (ENSMUSG00000025558.19) protein_coding-promoter-TSS (ENSMUSG00000025558.19) 74990 ENSMUSG00000115408.1 ENSMUSG00000115408 ENSMUST00000226518 Gm4529 processed_pseudogene Interval_5084 chr1 84848641 84852244 + 0 NA intron (ENSMUSG00000073633.9, intron 2 of 4) protein_coding-intron (ENSMUSG00000073633.9, intron 1 of 3) -18709 ENSMUSG00000073633.9 ENSMUSG00000073633 ENSMUST00000151737 Fbxo36 protein_coding Interval_107558 chr3 108492867 108493172 + 0 NA intron (ENSMUSG00000040412.17, intron 1 of 1) protein_coding-intron (ENSMUSG00000040412.17, intron 1 of 20) -5099 ENSMUSG00000080673.1 ENSMUSG00000080673 ENSMUST00000117023 Gm23336 snRNA Interval_27681 chr11 69443386 69444114 + 0 NA intron (ENSMUSG00000005237.14, intron 63 of 85) protein_coding-intron (ENSMUSG00000005237.14, intron 62 of 84) -4798 ENSMUSG00000086591.1 ENSMUSG00000086591 ENSMUST00000124108 Dnah2os antisense Interval_104201 chr3 60516031 60516758 + 0 NA intron (ENSMUSG00000027763.13, intron 1 of 3) protein_coding-intron (ENSMUSG00000027763.13, intron 1 of 1) 15129 ENSMUSG00000027763.13 ENSMUSG00000027763 ENSMUST00000193175 Mbnl1 protein_coding Interval_135642 chr6 42264271 42265482 + 0 NA promoter-TSS (ENSMUSG00000029863.13) protein_coding-promoter-TSS (ENSMUSG00000029863.13) 2917 ENSMUSG00000071506.4 ENSMUSG00000071506 ENSMUST00000095987 Tmem139 protein_coding Interval_39770 chr12 97926495 97927606 + 0 NA Intergenic Intergenic -54530 ENSMUSG00000111885.1 ENSMUSG00000111885 ENSMUST00000218234 Gm35326 lincRNA Interval_172254 chrX 12014656 12015553 + 0 NA Intergenic Intergenic 30636 ENSMUSG00000081947.2 ENSMUSG00000081947 ENSMUST00000117924 Gm14512 processed_pseudogene Interval_57903 chr15 25270695 25271374 + 0 NA Intergenic Intergenic -32204 ENSMUSG00000051237.7 ENSMUSG00000051237 ENSMUST00000228644 9230109A22Rik lincRNA Interval_131788 chr5 139877142 139877854 + 0 NA Intergenic Intergenic -18311 ENSMUSG00000105335.1 ENSMUSG00000105335 ENSMUST00000196396 Gm42423 lincRNA Interval_163172 chr9 16737382 16737678 + 0 NA Intergenic Intergenic -236245 ENSMUSG00000074505.6 ENSMUSG00000074505 ENSMUST00000213517 Fat3 protein_coding Interval_140430 chr6 118027014 118027402 + 0 NA intron (ENSMUSG00000030134.11, intron 1 of 12) protein_coding-intron (ENSMUSG00000030134.11, intron 1 of 12) 30001 ENSMUSG00000082791.3 ENSMUSG00000082791 ENSMUST00000118257 Gm4875 processed_pseudogene Interval_165300 chr9 46119709 46120560 + 0 NA intron (ENSMUSG00000034135.15, intron 1 of 24) protein_coding-intron (ENSMUSG00000034135.15, intron 1 of 22) -2996 ENSMUSG00000034135.15 ENSMUSG00000034135 ENSMUST00000138338 Sik3 protein_coding Interval_115122 chr4 91208749 91209377 + 0 NA Intergenic Intergenic 52381 ENSMUSG00000081876.1 ENSMUSG00000081876 ENSMUST00000119935 Gm12644 processed_pseudogene Interval_37248 chr12 62959351 62959812 + 0 NA Intergenic Intergenic -76299 ENSMUSG00000098200.1 ENSMUSG00000098200 ENSMUST00000182220 Gm7763 processed_pseudogene Interval_28627 chr11 77410836 77411113 + 0 NA intron (ENSMUSG00000037926.15, intron 4 of 13) protein_coding-intron (ENSMUSG00000037926.15, intron 5 of 14) -51671 ENSMUSG00000020836.15 ENSMUSG00000020836 ENSMUST00000079770 Coro6 protein_coding Interval_43004 chr13 22836476 22838054 + 0 NA Intergenic Intergenic -5917 ENSMUSG00000061296.2 ENSMUSG00000061296 ENSMUST00000072044 Vmn1r210 protein_coding Interval_51372 chr14 27067684 27068512 + 0 NA intron (ENSMUSG00000040717.6, intron 1 of 13) protein_coding-intron (ENSMUSG00000040717.6, intron 1 of 12) 701 ENSMUSG00000040717.6 ENSMUSG00000040717 ENSMUST00000225829 Il17rd protein_coding Interval_115729 chr4 103113905 103115099 + 0 NA promoter-TSS (ENSMUSG00000035126.19) protein_coding-promoter-TSS (ENSMUSG00000035126.19) -4888 ENSMUSG00000028522.16 ENSMUSG00000028522 ENSMUST00000128536 Mier1 protein_coding Interval_64952 chr16 17483389 17483809 + 0 NA promoter-TSS (ENSMUSG00000088993.1) snRNA-promoter-TSS (ENSMUSG00000088993.1) -450 ENSMUSG00000088993.1 ENSMUSG00000088993 ENSMUST00000158368 Gm22770 snRNA Interval_31694 chr11 102289614 102290165 + 0 NA TTS (ENSMUSG00000034757.15) protein_coding-TTS (ENSMUSG00000034757.15) 3555 ENSMUSG00000059995.12 ENSMUSG00000059995 ENSMUST00000107132 Atxn7l3 protein_coding Interval_80444 chr18 42285903 42286365 + 0 NA intron (ENSMUSG00000024491.16, intron 1 of 20) protein_coding-intron (ENSMUSG00000024491.16, intron 1 of 19) -10937 ENSMUSG00000117662.1 ENSMUSG00000117662 ENSMUST00000236054 Gm4013 processed_transcript Interval_146651 chr7 49145576 49146798 + 0 NA intron (ENSMUSG00000108950.1, intron 2 of 2) protein_coding-intron (ENSMUSG00000052512.17, intron 2 of 39) -11911 ENSMUSG00000108950.1 ENSMUSG00000108950 ENSMUST00000208621 9130015G15Rik antisense Interval_45127 chr13 52538613 52539029 + 0 NA Intergenic Intergenic -7542 ENSMUSG00000047842.7 ENSMUSG00000047842 ENSMUST00000057442 Diras2 protein_coding Interval_42016 chr13 6547393 6548668 + 0 NA promoter-TSS (ENSMUSG00000021193.10) protein_coding-promoter-TSS (ENSMUSG00000021193.10) 17435 ENSMUSG00000114195.1 ENSMUSG00000114195 ENSMUST00000221776 2900042G08Rik TEC Interval_78430 chr18 12790527 12792106 + 0 NA intron (ENSMUSG00000044252.18, intron 1 of 11) protein_coding-intron (ENSMUSG00000044252.18, intron 17 of 27) -48057 ENSMUSG00000083332.1 ENSMUSG00000083332 ENSMUST00000121453 Gm7599 processed_pseudogene Interval_83367 chr18 84630356 84630592 + 0 NA TTS (ENSMUSG00000056162.14) protein_coding-TTS (ENSMUSG00000056162.14) 4729 ENSMUSG00000117676.1 ENSMUSG00000117676 ENSMUST00000236074 Gm50314 antisense Interval_33765 chr11 118360440 118360949 + 0 NA Intergenic Intergenic -4954 ENSMUSG00000017466.9 ENSMUSG00000017466 ENSMUST00000155707 Timp2 protein_coding Interval_103020 chr3 34551342 34551698 + 0 NA intron (ENSMUSG00000105265.4, intron 3 of 3) processed_transcript-intron (ENSMUSG00000105265.4, intron 3 of 4) -8820 ENSMUSG00000098795.1 ENSMUSG00000098795 ENSMUST00000184662 Gm27403 misc_RNA Interval_94682 chr2 93289436 93289874 + 0 NA intron (ENSMUSG00000027217.13, intron 2 of 9) protein_coding-intron (ENSMUSG00000027217.13, intron 2 of 9) 22860 ENSMUSG00000027217.13 ENSMUSG00000027217 ENSMUST00000152141 Tspan18 protein_coding Interval_132141 chr5 142928939 142929638 + 0 NA Intergenic Intergenic -25634 ENSMUSG00000029580.14 ENSMUSG00000029580 ENSMUST00000164765 Actb protein_coding Interval_117477 chr4 124000480 124000879 + 0 NA Intergenic Intergenic 74445 ENSMUSG00000082515.1 ENSMUSG00000082515 ENSMUST00000118389 Gm12902 processed_pseudogene Interval_155381 chr8 33035187 33035459 + 0 NA intron (ENSMUSG00000110214.1, intron 3 of 3) lincRNA-intron (ENSMUSG00000110214.1, intron 3 of 3) 20768 ENSMUSG00000110214.1 ENSMUSG00000110214 ENSMUST00000211548 Gm45587 lincRNA Interval_136578 chr6 55987770 55987971 + 0 NA Intergenic Intergenic -29627 ENSMUSG00000002930.6 ENSMUSG00000002930 ENSMUST00000052827 Ppp1r17 protein_coding Interval_29000 chr11 79831381 79831843 + 0 NA intron (ENSMUSG00000086474.2, intron 2 of 4) lincRNA-intron (ENSMUSG00000086474.2, intron 2 of 4) -26440 ENSMUSG00000086474.2 ENSMUSG00000086474 ENSMUST00000162268 9130204K15Rik lincRNA Interval_81449 chr18 60822389 60825180 + 0 NA intron (ENSMUSG00000024613.16, intron 15 of 19) protein_coding-intron (ENSMUSG00000024613.16, intron 17 of 22) 11708 ENSMUSG00000093327.1 ENSMUSG00000093327 ENSMUST00000175586 Mir5107 miRNA Interval_62846 chr15 97383333 97385324 + 0 NA TTS (ENSMUSG00000044250.8) protein_coding-TTS (ENSMUSG00000044250.8) 23126 ENSMUSG00000044250.8 ENSMUSG00000044250 ENSMUST00000226495 Pced1b protein_coding Interval_6145 chr1 98013842 98014412 + 0 NA intron (ENSMUSG00000026335.16, intron 1 of 25) protein_coding-intron (ENSMUSG00000026335.16, intron 1 of 25) 33627 ENSMUSG00000089706.7 ENSMUSG00000089706 ENSMUST00000187924 B230216N24Rik processed_transcript Interval_75407 chr17 66404680 66406034 + 0 NA intron (ENSMUSG00000052105.17, intron 3 of 15) protein_coding-intron (ENSMUSG00000052105.17, intron 3 of 13) 8627 ENSMUSG00000093686.1 ENSMUSG00000093686 ENSMUST00000177415 Gm4705 processed_pseudogene Interval_54778 chr14 74976562 74977187 + 0 NA intron (ENSMUSG00000115019.1, intron 2 of 2) lincRNA-intron (ENSMUSG00000115019.1, intron 2 of 2) 1788 ENSMUSG00000115019.1 ENSMUSG00000115019 ENSMUST00000228599 Gm4278 lincRNA Interval_58828 chr15 38373506 38375104 + 0 NA Intergenic Intergenic 29849 ENSMUSG00000115405.1 ENSMUSG00000115405 ENSMUST00000227422 Gm41307 lincRNA Interval_105828 chr3 89569225 89570015 + 0 NA intron (ENSMUSG00000000794.9, intron 2 of 7) protein_coding-intron (ENSMUSG00000000794.9, intron 2 of 7) -92898 ENSMUSG00000000794.9 ENSMUSG00000000794 ENSMUST00000124584 Kcnn3 protein_coding Interval_99222 chr2 158193893 158195409 + 0 NA intron (ENSMUSG00000078957.3, intron 2 of 2) protein_coding-intron (ENSMUSG00000037813.13, intron 14 of 15) 2643 ENSMUSG00000078957.3 ENSMUSG00000078957 ENSMUST00000109506 1700060C20Rik antisense Interval_86010 chr19 34897294 34898100 + 0 NA Intergenic Intergenic -19844 ENSMUSG00000033610.16 ENSMUSG00000033610 ENSMUST00000237577 Pank1 protein_coding Interval_61422 chr15 81528096 81528729 + 0 NA Intergenic Intergenic -28867 ENSMUSG00000091198.2 ENSMUSG00000091198 ENSMUST00000172270 Gm5218 processed_pseudogene Interval_43343 chr13 29452027 29452252 + 0 NA intron (ENSMUSG00000006191.17, intron 2 of 2) protein_coding-intron (ENSMUSG00000006191.17, intron 12 of 15) 65315 ENSMUSG00000006191.17 ENSMUSG00000006191 ENSMUST00000129231 Cdkal1 protein_coding Interval_125550 chr5 70198814 70199416 + 0 NA Intergenic Intergenic -12269 ENSMUSG00000088863.1 ENSMUSG00000088863 ENSMUST00000158238 Gm23067 snRNA Interval_23518 chr11 23079259 23082177 + 0 NA Intergenic Intergenic 12720 ENSMUSG00000085665.1 ENSMUSG00000085665 ENSMUST00000128996 Gm12059 processed_transcript Interval_31148 chr11 98449675 98450995 + 0 NA intron (ENSMUSG00000019312.10, intron 1 of 13) protein_coding-intron (ENSMUSG00000019312.10, intron 1 of 14) 3267 ENSMUSG00000019312.10 ENSMUSG00000019312 ENSMUST00000129034 Grb7 protein_coding Interval_2141 chr1 36696917 36697191 + 0 NA Intergenic Intergenic 5444 ENSMUSG00000061518.11 ENSMUSG00000061518 ENSMUST00000193235 Cox5b protein_coding Interval_165513 chr9 48910659 48911455 + 0 NA promoter-TSS (ENSMUSG00000032269.8) protein_coding-promoter-TSS (ENSMUSG00000032269.8) -36 ENSMUSG00000032269.8 ENSMUSG00000032269 ENSMUST00000003826 Htr3a protein_coding Interval_39720 chr12 95340402 95340985 + 0 NA Intergenic Intergenic 15786 ENSMUSG00000112262.1 ENSMUSG00000112262 ENSMUST00000218579 Gm48013 unprocessed_pseudogene Interval_83068 chr18 81010140 81010574 + 0 NA Intergenic Intergenic -12974 ENSMUSG00000118235.1 ENSMUSG00000118235 ENSMUST00000236431 Gm7503 processed_pseudogene Interval_64629 chr16 13759729 13760119 + 0 NA Intergenic Intergenic 5358 ENSMUSG00000118559.2 ENSMUSG00000118559 ENSMUST00000239037 A930007A09Rik protein_coding Interval_145660 chr7 36919209 36919828 + 0 NA Intergenic Intergenic -168045 ENSMUSG00000089273.1 ENSMUSG00000089273 ENSMUST00000158648 Gm24550 misc_RNA Interval_95262 chr2 105339125 105340577 + 0 NA intron (ENSMUSG00000055312.2, intron 2 of 2) protein_coding-intron (ENSMUSG00000055312.2, intron 3 of 3) 55497 ENSMUSG00000005973.6 ENSMUSG00000005973 ENSMUST00000127019 Rcn1 protein_coding Interval_172127 chrX 7789511 7790457 + 0 NA promoter-TSS (ENSMUSG00000031153.16) protein_coding-promoter-TSS (ENSMUSG00000031153.16) -22 ENSMUSG00000031153.16 ENSMUSG00000031153 ENSMUST00000144946 Gripap1 protein_coding Interval_63002 chr15 98602039 98602574 + 0 NA intron (ENSMUSG00000022994.9, intron 1 of 20) protein_coding-intron (ENSMUSG00000022994.9, intron 2 of 21) 2520 ENSMUSG00000022994.9 ENSMUSG00000022994 ENSMUST00000226500 Adcy6 protein_coding Interval_43911 chr13 37999491 37999957 + 0 NA Intergenic Intergenic -5641 ENSMUSG00000021427.10 ENSMUSG00000021427 ENSMUST00000224399 Ssr1 protein_coding Interval_55513 chr14 89733441 89733646 + 0 NA Intergenic Intergenic 26738 ENSMUSG00000077408.1 ENSMUSG00000077408 ENSMUST00000104220 Gm25415 snoRNA Interval_160366 chr8 108764120 108765280 + 0 NA intron (ENSMUSG00000038872.10, intron 1 of 9) protein_coding-intron (ENSMUSG00000038872.10, intron 1 of 9) 27107 ENSMUSG00000104292.1 ENSMUSG00000104292 ENSMUST00000191614 Gm38042 TEC Interval_32823 chr11 111123064 111124179 + 0 NA Intergenic Intergenic 57457 ENSMUSG00000041695.2 ENSMUSG00000041695 ENSMUST00000042970 Kcnj2 protein_coding Interval_82719 chr18 76173066 76173295 + 0 NA Intergenic Intergenic 2628 ENSMUSG00000098276.1 ENSMUSG00000098276 ENSMUST00000184549 Mir6358 miRNA Interval_73187 chr17 35483959 35484855 + 0 NA Intergenic Intergenic 14310 ENSMUSG00000067235.14 ENSMUSG00000067235 ENSMUST00000174589 H2-Q10 protein_coding Interval_124372 chr5 44966851 44967091 + 0 NA exon (ENSMUSG00000062496.9, exon 2 of 3) lincRNA-exon (ENSMUSG00000062496.9, exon 2 of 3) 771 ENSMUSG00000062496.9 ENSMUSG00000062496 ENSMUST00000079389 4930431F12Rik lincRNA Interval_121195 chr4 153956654 153958050 + 0 NA promoter-TSS (ENSMUSG00000047613.10) protein_coding-promoter-TSS (ENSMUSG00000047613.10) 86 ENSMUSG00000047613.10 ENSMUSG00000047613 ENSMUST00000128457 A430005L14Rik protein_coding Interval_107982 chr3 118713509 118713940 + 0 NA intron (ENSMUSG00000033308.16, intron 3 of 4) protein_coding-intron (ENSMUSG00000033308.16, intron 3 of 22) 151538 ENSMUSG00000033308.16 ENSMUSG00000033308 ENSMUST00000129148 Dpyd protein_coding Interval_120344 chr4 148035570 148035749 + 0 NA intron (ENSMUSG00000029016.13, intron 2 of 22) protein_coding-intron (ENSMUSG00000029016.13, intron 2 of 22) 3162 ENSMUSG00000029016.13 ENSMUSG00000029016 ENSMUST00000131232 Clcn6 protein_coding Interval_102 GL456221.1 160119 160441 + 0 NA NA NA NA NA Interval_86104 chr19 36698056 36698456 + 0 NA intron (ENSMUSG00000087579.7, intron 1 of 4) antisense-intron (ENSMUSG00000087579.7, intron 1 of 4) 38397 ENSMUSG00000067279.3 ENSMUSG00000067279 ENSMUST00000087321 Ppp1r3c protein_coding Interval_11190 chr1 179986875 179987133 + 0 NA intron (ENSMUSG00000026490.18, intron 1 of 5) protein_coding-intron (ENSMUSG00000026490.18, intron 1 of 34) 25894 ENSMUSG00000026490.18 ENSMUSG00000026490 ENSMUST00000129754 Cdc42bpa protein_coding Interval_102225 chr3 19622692 19623461 + 0 NA intron (ENSMUSG00000082766.1, intron 1 of 1) protein_coding-intron (ENSMUSG00000082766.1, intron 1 of 1) 5601 ENSMUSG00000082766.1 ENSMUSG00000082766 ENSMUST00000119133 1700064H15Rik protein_coding Interval_63182 chr15 99601195 99602735 + 0 NA intron (ENSMUSG00000043144.6, intron 1 of 3) protein_coding-intron (ENSMUSG00000043144.6, intron 1 of 4) 565 ENSMUSG00000043144.6 ENSMUSG00000043144 ENSMUST00000023754 Aqp6 protein_coding Interval_58318 chr15 32328542 32330215 + 0 NA intron (ENSMUSG00000022231.10, intron 1 of 7) protein_coding-intron (ENSMUSG00000022231.10, intron 1 of 22) 84553 ENSMUSG00000022231.10 ENSMUSG00000022231 ENSMUST00000227429 Sema5a protein_coding Interval_16062 chr10 60431807 60432849 + 0 NA intron (ENSMUSG00000012819.15, intron 16 of 65) protein_coding-intron (ENSMUSG00000012819.15, intron 16 of 66) 32424 ENSMUSG00000090439.3 ENSMUSG00000090439 ENSMUST00000218360 Gm17455 protein_coding Interval_30261 chr11 92290540 92290887 + 0 NA Intergenic Intergenic -266300 ENSMUSG00000093113.1 ENSMUSG00000093113 ENSMUST00000175372 Gm22702 miRNA Interval_81808 chr18 64928681 64929013 + 0 NA intron (ENSMUSG00000024589.18, intron 1 of 29) protein_coding-intron (ENSMUSG00000024589.18, intron 1 of 29) -40356 ENSMUSG00000114210.2 ENSMUSG00000114210 ENSMUST00000224731 A330084C13Rik antisense Interval_1824 chr1 34026011 34026263 + 0 NA intron (ENSMUSG00000026131.20, intron 1 of 97) protein_coding-intron (ENSMUSG00000026131.20, intron 1 of 97) -5963 ENSMUSG00000103364.1 ENSMUSG00000103364 ENSMUST00000194178 Gm38157 TEC Interval_162398 chr8 127994774 127995345 + 0 NA Intergenic Intergenic 283166 ENSMUSG00000099326.1 ENSMUSG00000099326 ENSMUST00000184910 Mir21c miRNA Interval_60165 chr15 66890385 66891667 + 0 NA promoter-TSS (ENSMUSG00000005124.10) protein_coding-promoter-TSS (ENSMUSG00000005124.10) -18238 ENSMUSG00000005124.10 ENSMUSG00000005124 ENSMUST00000133863 Ccn4 protein_coding Interval_142358 chr6 140856453 140857941 + 0 NA Intergenic Intergenic -72493 ENSMUSG00000108039.1 ENSMUSG00000108039 ENSMUST00000203498 Gm43925 processed_pseudogene Interval_914 chr1 13132070 13132463 + 0 NA Intergenic Intergenic -5103 ENSMUSG00000042414.7 ENSMUSG00000042414 ENSMUST00000047577 Prdm14 protein_coding Interval_152317 chr7 131706072 131706555 + 0 NA intron (ENSMUSG00000030849.18, intron 2 of 6) protein_coding-intron (ENSMUSG00000030849.18, intron 2 of 6) -31431 ENSMUSG00000109066.1 ENSMUSG00000109066 ENSMUST00000207218 Gm4585 processed_pseudogene Interval_121619 chr5 3956564 3957408 + 0 NA intron (ENSMUSG00000040407.18, intron 2 of 2) protein_coding-intron (ENSMUSG00000040407.18, intron 5 of 47) -32020 ENSMUSG00000105893.1 ENSMUSG00000105893 ENSMUST00000200591 Wdr46-ps processed_pseudogene Interval_145392 chr7 34422567 34422786 + 0 NA Intergenic Intergenic -15461 ENSMUSG00000085124.1 ENSMUSG00000085124 ENSMUST00000140298 Gm12766 lincRNA Interval_36543 chr12 49169638 49170370 + 0 NA Intergenic Intergenic 29748 ENSMUSG00000098099.1 ENSMUSG00000098099 ENSMUST00000182862 Gm7456 processed_pseudogene Interval_132571 chr5 146403878 146404958 + 0 NA intron (ENSMUSG00000029636.11, intron 1 of 9) protein_coding-intron (ENSMUSG00000029636.11, intron 1 of 9) -51191 ENSMUSG00000029636.11 ENSMUSG00000029636 ENSMUST00000238592 Wasf3 protein_coding Interval_11717 chr1 184851724 184853777 + 0 NA Intergenic Intergenic 5662 ENSMUSG00000088562.2 ENSMUSG00000088562 ENSMUST00000157937 Gm23780 misc_RNA Interval_93341 chr2 72088231 72088425 + 0 NA intron (ENSMUSG00000049044.16, intron 1 of 2) protein_coding-intron (ENSMUSG00000049044.16, intron 1 of 27) 60468 ENSMUSG00000085439.1 ENSMUSG00000085439 ENSMUST00000126462 Rapgef4os1 antisense Interval_49454 chr13 112188514 112189321 + 0 NA Intergenic Intergenic -16849 ENSMUSG00000114745.1 ENSMUSG00000114745 ENSMUST00000223784 Gm48802 lincRNA Interval_170965 chr9 113360697 113360899 + 0 NA Intergenic Intergenic -8429 ENSMUSG00000110784.1 ENSMUSG00000110784 ENSMUST00000215648 Gm39436 lincRNA Interval_131932 chr5 140872518 140873581 + 0 NA TTS (ENSMUSG00000036526.8) protein_coding-TTS (ENSMUSG00000036526.8) -42892 ENSMUSG00000000149.10 ENSMUSG00000000149 ENSMUST00000198447 Gna12 protein_coding Interval_131197 chr5 135743469 135745151 + 0 NA promoter-TSS (ENSMUSG00000039886.8) protein_coding-promoter-TSS (ENSMUSG00000039886.8) -7074 ENSMUSG00000039886.8 ENSMUSG00000039886 ENSMUST00000153399 Tmem120a protein_coding Interval_7780 chr1 133634487 133635279 + 0 NA intron (ENSMUSG00000102976.6, intron 11 of 17) protein_coding-intron (ENSMUSG00000116275.1, intron 10 of 16) 4287 ENSMUSG00000102976.6 ENSMUSG00000102976 ENSMUST00000192775 Zc3h11a protein_coding Interval_143636 chr7 13480048 13480526 + 0 NA promoter-TSS (ENSMUSG00000107687.1) processed_pseudogene-promoter-TSS (ENSMUSG00000107687.1) -462 ENSMUSG00000107687.1 ENSMUSG00000107687 ENSMUST00000204184 Gm44254 processed_pseudogene Interval_60770 chr15 76645913 76647156 + 0 NA TTS (ENSMUSG00000053929.17) protein_coding-TTS (ENSMUSG00000053929.17) -12858 ENSMUSG00000059323.14 ENSMUSG00000059323 ENSMUST00000166974 Tonsl protein_coding Interval_22198 chr11 7092365 7092645 + 0 NA intron (ENSMUSG00000020431.5, intron 2 of 19) protein_coding-intron (ENSMUSG00000020431.5, intron 2 of 19) -67377 ENSMUSG00000020431.5 ENSMUSG00000020431 ENSMUST00000135398 Adcy1 protein_coding Interval_62993 chr15 98532867 98534898 + 0 NA intron (ENSMUSG00000022992.17, intron 1 of 8) protein_coding-intron (ENSMUSG00000022992.17, intron 1 of 9) 382 ENSMUSG00000022992.17 ENSMUSG00000022992 ENSMUST00000229818 Kansl2 protein_coding Interval_47615 chr13 90108702 90108948 + 0 NA exon (ENSMUSG00000012422.14, exon 4 of 4) protein_coding-exon (ENSMUSG00000012422.14, exon 4 of 4) 9844 ENSMUSG00000088308.1 ENSMUSG00000088308 ENSMUST00000157683 Gm24507 snoRNA Interval_39101 chr12 85051185 85051770 + 0 NA TTS (ENSMUSG00000021244.15) protein_coding-TTS (ENSMUSG00000021244.15) 9250 ENSMUSG00000021244.15 ENSMUSG00000021244 ENSMUST00000166605 Ylpm1 protein_coding Interval_72639 chr17 31253982 31254983 + 0 NA TTS (ENSMUSG00000024033.10) protein_coding-TTS (ENSMUSG00000024033.10) 7179 ENSMUSG00000117899.1 ENSMUSG00000117899 ENSMUST00000237156 Gm50218 antisense Interval_54950 chr14 76443102 76443584 + 0 NA intron (ENSMUSG00000022010.19, intron 3 of 4) protein_coding-intron (ENSMUSG00000022010.19, intron 1 of 2) 24515 ENSMUSG00000022010.19 ENSMUSG00000022010 ENSMUST00000133224 Tsc22d1 protein_coding Interval_66015 chr16 30964002 30966047 + 0 NA intron (ENSMUSG00000047434.14, intron 3 of 3) protein_coding-intron (ENSMUSG00000047434.14, intron 3 of 3) 8494 ENSMUSG00000087605.1 ENSMUSG00000087605 ENSMUST00000123905 Gm15742 sense_intronic Interval_159538 chr8 95327825 95329155 + 0 NA exon (ENSMUSG00000046556.7, exon 2 of 2) protein_coding-exon (ENSMUSG00000046556.7, exon 2 of 2) 3460 ENSMUSG00000046556.7 ENSMUSG00000046556 ENSMUST00000057717 Zfp319 protein_coding Interval_79260 chr18 28313597 28314429 + 0 NA Intergenic Intergenic 4253 ENSMUSG00000087940.1 ENSMUSG00000087940 ENSMUST00000157315 Gm24246 snoRNA Interval_153745 chr8 6078106 6078390 + 0 NA Intergenic Intergenic 43381 ENSMUSG00000109518.1 ENSMUSG00000109518 ENSMUST00000208320 Gm44843 TEC Interval_48348 chr13 98421069 98422207 + 0 NA Intergenic Intergenic 13427 ENSMUSG00000099446.1 ENSMUSG00000099446 ENSMUST00000186644 2310005E17Rik lincRNA Interval_53298 chr14 55866878 55867217 + 0 NA intron (ENSMUSG00000075592.10, intron 5 of 7) protein_coding-intron (ENSMUSG00000075592.10, intron 6 of 8) 13037 ENSMUSG00000075592.10 ENSMUSG00000075592 ENSMUST00000100529 Nynrin protein_coding Interval_126330 chr5 86762407 86762881 + 0 NA intron (ENSMUSG00000105704.1, intron 1 of 4) lincRNA-intron (ENSMUSG00000105704.1, intron 1 of 4) -16829 ENSMUSG00000054537.8 ENSMUSG00000054537 ENSMUST00000161306 Tmprss11e protein_coding Interval_84055 chr19 6986412 6988063 + 0 NA promoter-TSS (ENSMUSG00000024962.13) protein_coding-promoter-TSS (ENSMUSG00000024962.13) -97 ENSMUSG00000024962.13 ENSMUSG00000024962 ENSMUST00000147924 Vegfb protein_coding Interval_12049 chr1 189099027 189099463 + 0 NA Intergenic Intergenic -19541 ENSMUSG00000104464.1 ENSMUSG00000104464 ENSMUST00000192327 Gm18698 processed_pseudogene Interval_86577 chr19 41820989 41822037 + 0 NA Intergenic Intergenic -8457 ENSMUSG00000067199.4 ENSMUSG00000067199 ENSMUST00000087155 Frat1 protein_coding Interval_59408 chr15 52505442 52505652 + 0 NA Intergenic Intergenic 5891 ENSMUSG00000094481.1 ENSMUSG00000094481 ENSMUST00000178490 Gm23267 snoRNA Interval_23784 chr11 26200871 26201736 + 0 NA promoter-TSS (ENSMUSG00000099015.1) miRNA-promoter-TSS (ENSMUSG00000099015.1) -937 ENSMUSG00000099015.1 ENSMUSG00000099015 ENSMUST00000185114 Mir6372 miRNA Interval_16424 chr10 62822215 62822416 + 0 NA intron (ENSMUSG00000047146.17, intron 7 of 12) protein_coding-intron (ENSMUSG00000047146.17, intron 6 of 10) 37679 ENSMUSG00000112309.1 ENSMUSG00000112309 ENSMUST00000220243 Gm48353 TEC Interval_111896 chr4 32335668 32335997 + 0 NA intron (ENSMUSG00000040270.16, intron 2 of 3) protein_coding-intron (ENSMUSG00000040270.16, intron 2 of 7) -81603 ENSMUSG00000040270.16 ENSMUSG00000040270 ENSMUST00000125263 Bach2 protein_coding Interval_134052 chr6 18168776 18169423 + 0 NA Intergenic Intergenic -11979 ENSMUSG00000082289.1 ENSMUSG00000082289 ENSMUST00000121139 Gm15596 processed_pseudogene Interval_32559 chr11 108586283 108586933 + 0 NA promoter-TSS (ENSMUSG00000020728.17) protein_coding-promoter-TSS (ENSMUSG00000020728.17) -18619 ENSMUSG00000020728.17 ENSMUSG00000020728 ENSMUST00000132978 Cep112 protein_coding Interval_11739 chr1 185037712 185038552 + 0 NA Intergenic Intergenic -38657 ENSMUSG00000026620.11 ENSMUSG00000026620 ENSMUST00000192657 Mark1 protein_coding Interval_93384 chr2 72565873 72566465 + 0 NA Intergenic Intergenic 4653 ENSMUSG00000080865.1 ENSMUSG00000080865 ENSMUST00000121450 Eif1-ps3 processed_pseudogene Interval_37346 chr12 65293922 65294285 + 0 NA Intergenic Intergenic 42393 ENSMUSG00000113442.1 ENSMUSG00000113442 ENSMUST00000222221 Gm47973 processed_pseudogene Interval_1507 chr1 24374767 24375151 + 0 NA intron (ENSMUSG00000026141.13, intron 4 of 39) protein_coding-intron (ENSMUSG00000026141.13, intron 15 of 47) 77786 ENSMUSG00000026141.13 ENSMUSG00000026141 ENSMUST00000051344 Col19a1 protein_coding Interval_92793 chr2 65460859 65462648 + 0 NA intron (ENSMUSG00000057182.15, intron 26 of 26) protein_coding-intron (ENSMUSG00000057182.15, intron 26 of 26) -47512 ENSMUSG00000086701.1 ENSMUSG00000086701 ENSMUST00000145994 Gm13595 antisense Interval_35976 chr12 33052824 33053033 + 0 NA promoter-TSS (ENSMUSG00000035860.9) protein_coding-promoter-TSS (ENSMUSG00000035860.9) 7333 ENSMUSG00000035860.9 ENSMUSG00000035860 ENSMUST00000219065 Cdhr3 protein_coding Interval_110174 chr3 153962225 153962438 + 0 NA Intergenic Intergenic -24522 ENSMUSG00000062908.12 ENSMUSG00000062908 ENSMUST00000135724 Acadm protein_coding Interval_133824 chr6 12821615 12821807 + 0 NA Intergenic Intergenic -35686 ENSMUSG00000083620.1 ENSMUSG00000083620 ENSMUST00000121833 Gm15529 processed_pseudogene Interval_124877 chr5 58724814 58725093 + 0 NA Intergenic Intergenic 271914 ENSMUSG00000100557.1 ENSMUSG00000100557 ENSMUST00000189036 1700029E06Rik lincRNA Interval_7747 chr1 133396756 133398350 + 0 NA intron (ENSMUSG00000070643.11, intron 1 of 13) protein_coding-intron (ENSMUSG00000070643.11, intron 1 of 13) 26824 ENSMUSG00000070643.11 ENSMUSG00000070643 ENSMUST00000126530 Sox13 protein_coding Interval_41530 chr12 116028128 116028828 + 0 NA Intergenic Intergenic -18385 ENSMUSG00000105605.1 ENSMUSG00000105605 ENSMUST00000200562 Ighv1-86 IG_V_pseudogene Interval_120053 chr4 141552033 141553198 + 0 NA Intergenic Intergenic 6426 ENSMUSG00000048406.5 ENSMUSG00000048406 ENSMUST00000049927 B330016D10Rik pseudogene Interval_165887 chr9 54223362 54223575 + 0 NA intron (ENSMUSG00000032274.9, intron 1 of 1) protein_coding-intron (ENSMUSG00000032274.9, intron 1 of 1) -41394 ENSMUSG00000032274.9 ENSMUSG00000032274 ENSMUST00000216974 Cyp19a1 protein_coding Interval_111141 chr4 13050179 13050419 + 0 NA Intergenic Intergenic -25841 ENSMUSG00000086227.1 ENSMUSG00000086227 ENSMUST00000139614 Gm11820 lincRNA Interval_161790 chr8 122812586 122813538 + 0 NA exon (ENSMUSG00000015016.8, exon 8 of 10) protein_coding-exon (ENSMUSG00000015016.8, exon 8 of 10) -13024 ENSMUSG00000110540.1 ENSMUSG00000110540 ENSMUST00000212701 Gm45743 TEC Interval_85563 chr19 28572335 28573125 + 0 NA intron (ENSMUSG00000052942.13, intron 2 of 10) protein_coding-intron (ENSMUSG00000052942.13, intron 2 of 9) 10564 ENSMUSG00000089952.1 ENSMUSG00000089952 ENSMUST00000162380 4933413C19Rik sense_intronic Interval_46961 chr13 73763038 73764654 + 0 NA exon (ENSMUSG00000017756.9, exon 1 of 24) protein_coding-exon (ENSMUSG00000017756.9, exon 1 of 24) -40763 ENSMUSG00000017756.9 ENSMUSG00000017756 ENSMUST00000221813 Slc12a7 protein_coding Interval_123510 chr5 33057052 33057571 + 0 NA Intergenic Intergenic 7326 ENSMUSG00000107046.1 ENSMUSG00000107046 ENSMUST00000201086 Gm43849 processed_pseudogene Interval_94271 chr2 87272681 87273028 + 0 NA exon (ENSMUSG00000070855.8, exon 2 of 2) protein_coding-exon (ENSMUSG00000070855.8, exon 2 of 2) 5320 ENSMUSG00000070855.8 ENSMUSG00000070855 ENSMUST00000090717 Olfr1116 protein_coding Interval_81779 chr18 64621888 64622211 + 0 NA intron (ENSMUSG00000039529.9, intron 1 of 4) protein_coding-intron (ENSMUSG00000039529.9, intron 1 of 27) -8950 ENSMUSG00000118133.1 ENSMUSG00000118133 ENSMUST00000238142 Gm6978 transcribed_processed_pseudogene Interval_97712 chr2 143093656 143094118 + 0 NA Intergenic Intergenic 15414 ENSMUSG00000027416.2 ENSMUSG00000027416 ENSMUST00000028902 Otor protein_coding Interval_149156 chr7 95479621 95481346 + 0 NA Intergenic Intergenic 5537 ENSMUSG00000108429.1 ENSMUSG00000108429 ENSMUST00000206820 Gm44603 processed_pseudogene Interval_123284 chr5 31110608 31111240 + 0 NA intron (ENSMUSG00000053856.7, intron 3 of 4) protein_coding-intron (ENSMUSG00000053856.7, intron 4 of 5) 2607 ENSMUSG00000053856.7 ENSMUSG00000053856 ENSMUST00000066544 Dnajc5g protein_coding Interval_92844 chr2 66305825 66306702 + 0 NA intron (ENSMUSG00000064329.13, intron 1 of 12) protein_coding-intron (ENSMUSG00000064329.13, intron 16 of 25) 11683 ENSMUSG00000064329.13 ENSMUSG00000064329 ENSMUST00000129508 Scn1a protein_coding Interval_122072 chr5 16124355 16124624 + 0 NA intron (ENSMUSG00000040118.15, intron 1 of 7) protein_coding-intron (ENSMUSG00000040118.15, intron 3 of 38) 17360 ENSMUSG00000105526.1 ENSMUSG00000105526 ENSMUST00000197593 Gm43490 TEC Interval_19848 chr10 110376542 110376769 + 0 NA intron (ENSMUSG00000020181.18, intron 1 of 40) protein_coding-intron (ENSMUSG00000020181.18, intron 1 of 4) -2853 ENSMUSG00000112548.1 ENSMUSG00000112548 ENSMUST00000219876 Gm47338 TEC Interval_76365 chr17 79583571 79584030 + 0 NA Intergenic Intergenic -88600 ENSMUSG00000036368.8 ENSMUSG00000036368 ENSMUST00000224097 Rmdn2 protein_coding Interval_167089 chr9 65180198 65180607 + 0 NA promoter-TSS (ENSMUSG00000032394.6) protein_coding-promoter-TSS (ENSMUSG00000032394.6) -14951 ENSMUSG00000032392.11 ENSMUSG00000032392 ENSMUST00000213766 Parp16 protein_coding Interval_140755 chr6 121081475 121082449 + 0 NA promoter-TSS (ENSMUSG00000051586.17) protein_coding-promoter-TSS (ENSMUSG00000051586.17) -353 ENSMUSG00000051586.17 ENSMUSG00000051586 ENSMUST00000207993 Mical3 protein_coding Interval_29810 chr11 86993132 86994398 + 0 NA promoter-TSS (ENSMUSG00000018427.8) protein_coding-promoter-TSS (ENSMUSG00000018427.8) 3498 ENSMUSG00000088816.1 ENSMUSG00000088816 ENSMUST00000158191 Gm22387 scaRNA Interval_50425 chr14 12917656 12918016 + 0 NA Intergenic Intergenic 50283 ENSMUSG00000021741.4 ENSMUSG00000021741 ENSMUST00000022260 Gm5457 processed_pseudogene Interval_48308 chr13 98001266 98002029 + 0 NA intron (ENSMUSG00000021662.11, intron 9 of 34) protein_coding-intron (ENSMUSG00000021662.11, intron 9 of 35) 14770 ENSMUSG00000021662.11 ENSMUSG00000021662 ENSMUST00000224866 Arhgef28 protein_coding Interval_155263 chr8 29193801 29194937 + 0 NA intron (ENSMUSG00000063626.6, intron 1 of 14) protein_coding-intron (ENSMUSG00000063626.6, intron 1 of 17) 25058 ENSMUSG00000063626.6 ENSMUSG00000063626 ENSMUST00000209401 Unc5d protein_coding Interval_124443 chr5 47494049 47494232 + 0 NA Intergenic Intergenic -140362 ENSMUSG00000106402.1 ENSMUSG00000106402 ENSMUST00000197690 Gm17824 processed_pseudogene Interval_46816 chr13 71428071 71428925 + 0 NA Intergenic Intergenic -59109 ENSMUSG00000113358.1 ENSMUSG00000113358 ENSMUST00000221719 1700112M02Rik lincRNA Interval_51269 chr14 25645847 25646999 + 0 NA TTS (ENSMUSG00000007817.15) protein_coding-TTS (ENSMUSG00000007817.15) -47771 ENSMUSG00000021868.7 ENSMUSG00000021868 ENSMUST00000223872 Ppif protein_coding Interval_140256 chr6 115836477 115836731 + 0 NA intron (ENSMUSG00000107429.2, intron 1 of 3) protein_coding-intron (ENSMUSG00000030321.15, intron 1 of 8) 473 ENSMUSG00000107429.2 ENSMUSG00000107429 ENSMUST00000203620 Gm44206 antisense Interval_29984 chr11 88543674 88544411 + 0 NA intron (ENSMUSG00000069769.13, intron 1 of 5) protein_coding-intron (ENSMUSG00000069769.13, intron 6 of 13) 46105 ENSMUSG00000069769.13 ENSMUSG00000069769 ENSMUST00000126293 Msi2 protein_coding Interval_30686 chr11 95896646 95898126 + 0 NA intron (ENSMUSG00000013418.8, intron 1 of 10) protein_coding-intron (ENSMUSG00000013418.8, intron 1 of 10) 17505 ENSMUSG00000013418.8 ENSMUSG00000013418 ENSMUST00000038343 B4galnt2 protein_coding Interval_24649 chr11 35638966 35639817 + 0 NA intron (ENSMUSG00000056427.10, intron 20 of 35) protein_coding-intron (ENSMUSG00000056427.10, intron 20 of 35) 22575 ENSMUSG00000065583.1 ENSMUSG00000065583 ENSMUST00000083649 Mir218-2 miRNA Interval_97165 chr2 131935475 131936048 + 0 NA intron (ENSMUSG00000098754.7, intron 2 of 3) protein_coding-intron (ENSMUSG00000079037.9, intron 2 of 2) -15101 ENSMUSG00000027338.16 ENSMUSG00000027338 ENSMUST00000110169 Prnd protein_coding Interval_39478 chr12 88324829 88325148 + 0 NA promoter-TSS (ENSMUSG00000093847.2) protein_coding-promoter-TSS (ENSMUSG00000093847.2) -962 ENSMUSG00000093847.2 ENSMUSG00000093847 ENSMUST00000177747 Gm5039 protein_coding Interval_134455 chr6 28895958 28896176 + 0 NA intron (ENSMUSG00000001424.14, intron 16 of 16) protein_coding-intron (ENSMUSG00000001424.14, intron 16 of 16) -65722 ENSMUSG00000049939.6 ENSMUSG00000049939 ENSMUST00000062304 Lrrc4 protein_coding Interval_156376 chr8 47806410 47806925 + 0 NA Intergenic Intergenic 11554 ENSMUSG00000110464.1 ENSMUSG00000110464 ENSMUST00000212295 1700061N14Rik lincRNA Interval_65414 chr16 22214013 22215429 + 0 NA Intergenic Intergenic -9523 ENSMUSG00000064686.1 ENSMUSG00000064686 ENSMUST00000082752 Gm25810 snRNA Interval_132433 chr5 144895165 144895402 + 0 NA intron (ENSMUSG00000038780.14, intron 2 of 6) protein_coding-intron (ENSMUSG00000038780.14, intron 7 of 17) 1533 ENSMUSG00000098822.1 ENSMUSG00000098822 ENSMUST00000183852 Mir7039 miRNA Interval_111686 chr4 25795967 25796504 + 0 NA intron (ENSMUSG00000055373.8, intron 1 of 2) protein_coding-intron (ENSMUSG00000055373.8, intron 1 of 2) 3620 ENSMUSG00000055373.8 ENSMUSG00000055373 ENSMUST00000149875 Fut9 protein_coding Interval_27480 chr11 68129745 68129939 + 0 NA intron (ENSMUSG00000020903.13, intron 6 of 6) protein_coding-intron (ENSMUSG00000020903.13, intron 7 of 7) -33878 ENSMUSG00000083924.1 ENSMUSG00000083924 ENSMUST00000120312 Gm12304 processed_pseudogene Interval_146460 chr7 46077100 46077704 + 0 NA intron (ENSMUSG00000030835.6, intron 26 of 30) protein_coding-intron (ENSMUSG00000030835.6, intron 26 of 30) 15559 ENSMUSG00000109882.1 ENSMUSG00000109882 ENSMUST00000210053 Gm18706 processed_pseudogene Interval_106541 chr3 97105814 97106097 + 0 NA Intergenic Intergenic -13170 ENSMUSG00000104766.1 ENSMUSG00000104766 ENSMUST00000197696 4930573H18Rik antisense Interval_14700 chr10 39139217 39139452 + 0 NA intron (ENSMUSG00000019845.8, intron 4 of 4) protein_coding-intron (ENSMUSG00000019845.8, intron 4 of 11) 5307 ENSMUSG00000019845.8 ENSMUSG00000019845 ENSMUST00000214493 Tube1 protein_coding Interval_93968 chr2 80288584 80289324 + 0 NA Intergenic Intergenic -3518 ENSMUSG00000050114.7 ENSMUSG00000050114 ENSMUST00000057072 Prdx6b protein_coding Interval_48797 chr13 103362606 103363552 + 0 NA Intergenic Intergenic 6827 ENSMUSG00000047643.5 ENSMUSG00000047643 ENSMUST00000052030 Gm5454 processed_pseudogene Interval_11993 chr1 188627744 188628064 + 0 NA intron (ENSMUSG00000026609.15, intron 8 of 12) protein_coding-intron (ENSMUSG00000026609.15, intron 32 of 70) -4851 ENSMUSG00000077235.1 ENSMUSG00000077235 ENSMUST00000104047 Gm25095 snoRNA Interval_91289 chr2 37451663 37453095 + 0 NA exon (ENSMUSG00000035437.15, exon 1 of 1) protein_coding-intron (ENSMUSG00000035437.15, intron 1 of 25) -9208 ENSMUSG00000066798.3 ENSMUSG00000066798 ENSMUST00000112932 Zbtb6 protein_coding Interval_125963 chr5 76285229 76286299 + 0 NA intron (ENSMUSG00000029238.11, intron 2 of 17) protein_coding-intron (ENSMUSG00000029238.11, intron 2 of 22) 16011 ENSMUSG00000106815.1 ENSMUSG00000106815 ENSMUST00000202348 Gm43658 TEC Interval_10604 chr1 172157908 172158666 + 0 NA intron (ENSMUSG00000026554.15, intron 2 of 9) protein_coding-intron (ENSMUSG00000026554.15, intron 1 of 12) 10198 ENSMUSG00000026554.15 ENSMUSG00000026554 ENSMUST00000191891 Dcaf8 protein_coding Interval_103360 chr3 40425426 40425654 + 0 NA Intergenic Intergenic 84234 ENSMUSG00000037884.6 ENSMUSG00000037884 ENSMUST00000202778 1700017G19Rik lincRNA Interval_159524 chr8 95220658 95221237 + 0 NA Intergenic Intergenic 79719 ENSMUSG00000031789.17 ENSMUSG00000031789 ENSMUST00000212237 Cngb1 protein_coding Interval_21428 chr10 128546440 128549430 + 0 NA promoter-TSS (ENSMUSG00000039810.11) protein_coding-promoter-TSS (ENSMUSG00000039810.11) -296 ENSMUSG00000039810.11 ENSMUSG00000039810 ENSMUST00000133458 Zc3h10 protein_coding Interval_88618 chr2 6849328 6849816 + 0 NA intron (ENSMUSG00000002107.18, intron 2 of 13) protein_coding-intron (ENSMUSG00000002107.18, intron 3 of 15) 23025 ENSMUSG00000002107.18 ENSMUSG00000002107 ENSMUST00000182037 Celf2 protein_coding Interval_148316 chr7 80467698 80468250 + 0 NA promoter-TSS (ENSMUSG00000030528.12) protein_coding-promoter-TSS (ENSMUSG00000030528.12) -7150 ENSMUSG00000030528.12 ENSMUSG00000030528 ENSMUST00000205584 Blm protein_coding Interval_128502 chr5 113677408 113679150 + 0 NA Intergenic Intergenic -27883 ENSMUSG00000042190.12 ENSMUSG00000042190 ENSMUST00000151460 Cmklr1 protein_coding Interval_115711 chr4 102917981 102918292 + 0 NA intron (ENSMUSG00000028524.21, intron 10 of 10) protein_coding-intron (ENSMUSG00000028524.21, intron 13 of 23) -60555 ENSMUSG00000028523.14 ENSMUSG00000028523 ENSMUST00000139883 Tctex1d1 protein_coding Interval_45313 chr13 54260262 54260523 + 0 NA Intergenic Intergenic 15096 ENSMUSG00000113327.1 ENSMUSG00000113327 ENSMUST00000221038 Gm48615 lincRNA Interval_67052 chr16 42189997 42191089 + 0 NA Intergenic Intergenic -5626 ENSMUSG00000116841.1 ENSMUSG00000116841 ENSMUST00000232237 Gm49737 processed_pseudogene Interval_22612 chr11 12278069 12278324 + 0 NA intron (ENSMUSG00000020173.17, intron 4 of 4) protein_coding-intron (ENSMUSG00000020173.17, intron 9 of 14) -44079 ENSMUSG00000086584.8 ENSMUSG00000086584 ENSMUST00000174550 Gm12002 antisense Interval_143219 chr7 4541520 4542232 + 0 NA exon (ENSMUSG00000004961.7, exon 6 of 8) protein_coding-exon (ENSMUSG00000004961.7, exon 6 of 8) 5097 ENSMUSG00000004961.7 ENSMUSG00000004961 ENSMUST00000206933 Syt5 protein_coding Interval_120324 chr4 147878865 147880415 + 0 NA intron (ENSMUSG00000029020.13, intron 16 of 18) protein_coding-intron (ENSMUSG00000029020.13, intron 17 of 19) 10661 ENSMUSG00000070583.1 ENSMUSG00000070583 ENSMUST00000094481 Fv1 protein_coding Interval_46398 chr13 64565639 64566577 + 0 NA Intergenic Intergenic -45752 ENSMUSG00000113850.1 ENSMUSG00000113850 ENSMUST00000222525 Gm47191 transcribed_processed_pseudogene Interval_155125 chr8 26833322 26833908 + 0 NA intron (ENSMUSG00000100335.2, intron 2 of 3) lincRNA-intron (ENSMUSG00000100335.2, intron 1 of 2) 49080 ENSMUSG00000100335.2 ENSMUSG00000100335 ENSMUST00000210263 2310008N11Rik lincRNA Interval_151029 chr7 118001128 118001386 + 0 NA Intergenic Intergenic 113999 ENSMUSG00000008683.16 ENSMUSG00000008683 ENSMUST00000128482 Rps15a protein_coding Interval_30259 chr11 92233990 92234171 + 0 NA Intergenic Intergenic -209667 ENSMUSG00000093113.1 ENSMUSG00000093113 ENSMUST00000175372 Gm22702 miRNA Interval_31835 chr11 103229766 103231321 + 0 NA intron (ENSMUSG00000020941.7, intron 8 of 15) protein_coding-intron (ENSMUSG00000020941.7, intron 8 of 15) 9591 ENSMUSG00000020941.7 ENSMUSG00000020941 ENSMUST00000152677 Map3k14 protein_coding Interval_93339 chr2 72080351 72080576 + 0 NA intron (ENSMUSG00000049044.16, intron 1 of 2) protein_coding-intron (ENSMUSG00000049044.16, intron 1 of 27) 68333 ENSMUSG00000085439.1 ENSMUSG00000085439 ENSMUST00000126462 Rapgef4os1 antisense Interval_156850 chr8 61141781 61143255 + 0 NA intron (ENSMUSG00000086681.1, intron 1 of 2) antisense-intron (ENSMUSG00000086681.1, intron 1 of 2) -30016 ENSMUSG00000080956.1 ENSMUSG00000080956 ENSMUST00000120685 Gm16179 processed_pseudogene Interval_121776 chr5 7959485 7960826 + 0 NA promoter-TSS (ENSMUSG00000012428.9) protein_coding-promoter-TSS (ENSMUSG00000012428.9) 191 ENSMUSG00000105068.1 ENSMUSG00000105068 ENSMUST00000198825 Gm30835 lincRNA Interval_47086 chr13 75523350 75524273 + 0 NA exon (ENSMUSG00000113929.1, exon 1 of 1) processed_pseudogene-exon (ENSMUSG00000113929.1, exon 1 of 1) 537 ENSMUSG00000113929.1 ENSMUSG00000113929 ENSMUST00000223378 Gm3926 processed_pseudogene Interval_83357 chr18 84535903 84536480 + 0 NA intron (ENSMUSG00000048410.17, intron 2 of 2) protein_coding-intron (ENSMUSG00000048410.17, intron 2 of 2) -89554 ENSMUSG00000117676.1 ENSMUSG00000117676 ENSMUST00000236074 Gm50314 antisense Interval_6072 chr1 95803784 95804037 + 0 NA Intergenic Intergenic 28325 ENSMUSG00000095955.1 ENSMUSG00000095955 ENSMUST00000179775 Gm22360 snRNA Interval_144670 chr7 27427787 27428336 + 0 NA intron (ENSMUSG00000011751.16, intron 5 of 35) protein_coding-intron (ENSMUSG00000011751.16, intron 5 of 35) -5075 ENSMUSG00000108416.1 ENSMUSG00000108416 ENSMUST00000138087 Gm44924 processed_transcript Interval_70430 chr17 10180560 10180749 + 0 NA Intergenic Intergenic 138707 ENSMUSG00000062078.15 ENSMUSG00000062078 ENSMUST00000233684 Qk protein_coding Interval_1324 chr1 20622858 20623037 + 0 NA Intergenic Intergenic -4883 ENSMUSG00000043760.16 ENSMUSG00000043760 ENSMUST00000128051 Pkhd1 protein_coding Interval_17067 chr10 70981989 70982229 + 0 NA intron (ENSMUSG00000112745.1, intron 1 of 1) protein_coding-intron (ENSMUSG00000014329.14, intron 3 of 21) 10931 ENSMUSG00000112745.1 ENSMUSG00000112745 ENSMUST00000219321 Gm48025 sense_intronic Interval_157407 chr8 70171972 70173585 + 0 NA intron (ENSMUSG00000002342.17, intron 1 of 2) protein_coding-intron (ENSMUSG00000002342.17, intron 1 of 11) 370 ENSMUSG00000002342.17 ENSMUSG00000002342 ENSMUST00000143543 Tmem161a protein_coding Interval_162986 chr9 14206867 14207294 + 0 NA intron (ENSMUSG00000111803.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000111803.1, intron 1 of 1) 2997 ENSMUSG00000111803.1 ENSMUSG00000111803 ENSMUST00000216569 Gm47564 lincRNA Interval_148114 chr7 79312642 79314922 + 0 NA intron (ENSMUSG00000039202.12, intron 3 of 5) protein_coding-intron (ENSMUSG00000039202.12, intron 3 of 10) 14757 ENSMUSG00000108460.1 ENSMUSG00000108460 ENSMUST00000205557 Gm39041 TEC Interval_60924 chr15 77873220 77874790 + 0 NA Intergenic Intergenic -33249 ENSMUSG00000084497.1 ENSMUSG00000084497 ENSMUST00000122548 Gm22107 snRNA Interval_69673 chr16 95198931 95199121 + 0 NA intron (ENSMUSG00000116720.1, intron 3 of 4) antisense-intron (ENSMUSG00000116720.1, intron 3 of 4) -27516 ENSMUSG00000116601.1 ENSMUSG00000116601 ENSMUST00000231527 Gm49642 TEC Interval_13044 chr10 9996252 9996483 + 0 NA intron (ENSMUSG00000101621.2, intron 1 of 1) lincRNA-intron (ENSMUSG00000101621.2, intron 1 of 1) 19677 ENSMUSG00000101621.2 ENSMUSG00000101621 ENSMUST00000219328 Gm28905 lincRNA Interval_43217 chr13 25451310 25452424 + 0 NA Intergenic Intergenic -3855 ENSMUSG00000083919.1 ENSMUSG00000083919 ENSMUST00000120382 Tpi-rs8 processed_pseudogene Interval_1250 chr1 18223739 18223978 + 0 NA promoter-TSS (ENSMUSG00000070977.4) unprocessed_pseudogene-promoter-TSS (ENSMUSG00000070977.4) -294 ENSMUSG00000070977.4 ENSMUSG00000070977 ENSMUST00000126871 Defb44-ps unprocessed_pseudogene Interval_156642 chr8 56251206 56252959 + 0 NA Intergenic Intergenic -42503 ENSMUSG00000031613.9 ENSMUSG00000031613 ENSMUST00000034026 Hpgd protein_coding Interval_66279 chr16 32828577 32829780 + 0 NA intron (ENSMUSG00000035629.19, intron 1 of 2) protein_coding-intron (ENSMUSG00000035629.19, intron 11 of 18) 7393 ENSMUSG00000035629.19 ENSMUSG00000035629 ENSMUST00000149621 Rubcn protein_coding Interval_141790 chr6 134534738 134535375 + 0 NA intron (ENSMUSG00000030201.15, intron 1 of 3) protein_coding-intron (ENSMUSG00000030201.15, intron 2 of 22) -67295 ENSMUSG00000030201.15 ENSMUSG00000030201 ENSMUST00000203235 Lrp6 protein_coding Interval_139433 chr6 100143243 100144225 + 0 NA promoter-TSS (ENSMUSG00000107558.1) TEC-promoter-TSS (ENSMUSG00000107558.1) 80 ENSMUSG00000107558.1 ENSMUSG00000107558 ENSMUST00000204605 2010109P13Rik TEC Interval_173554 chrX 99285245 99286188 + 0 NA Intergenic Intergenic 133179 ENSMUSG00000085053.1 ENSMUSG00000085053 ENSMUST00000152025 Gm14809 lincRNA Interval_37772 chr12 71885917 71886147 + 0 NA intron (ENSMUSG00000034574.10, intron 1 of 14) protein_coding-intron (ENSMUSG00000034574.10, intron 1 of 25) -38741 ENSMUSG00000098224.1 ENSMUSG00000098224 ENSMUST00000183329 Gm7985 processed_pseudogene Interval_38902 chr12 83705143 83706638 + 0 NA intron (ENSMUSG00000019969.14, intron 2 of 3) protein_coding-intron (ENSMUSG00000019969.14, intron 3 of 11) 17702 ENSMUSG00000019969.14 ENSMUSG00000019969 ENSMUST00000221072 Psen1 protein_coding Interval_44380 chr13 44461985 44462470 + 0 NA intron (ENSMUSG00000098144.8, intron 4 of 7) lincRNA-intron (ENSMUSG00000098144.8, intron 4 of 7) -6924 ENSMUSG00000098107.1 ENSMUSG00000098107 ENSMUST00000183264 Gm27007 lincRNA Interval_100208 chr2 167640054 167641463 + 0 NA intron (ENSMUSG00000089739.2, intron 5 of 7) protein_coding-intron (ENSMUSG00000089739.2, intron 5 of 7) 3701 ENSMUSG00000093476.1 ENSMUSG00000093476 ENSMUST00000175531 Gm22355 miRNA Interval_162171 chr8 125683477 125683743 + 0 NA Intergenic Intergenic 13792 ENSMUSG00000050930.5 ENSMUSG00000050930 ENSMUST00000053078 Map10 protein_coding Interval_98632 chr2 153672570 153672858 + 0 NA intron (ENSMUSG00000027478.15, intron 13 of 23) protein_coding-intron (ENSMUSG00000027478.15, intron 13 of 23) 3344 ENSMUSG00000027478.15 ENSMUSG00000027478 ENSMUST00000140811 Dnmt3b protein_coding Interval_26361 chr11 57278204 57278733 + 0 NA intron (ENSMUSG00000020524.16, intron 11 of 15) protein_coding-intron (ENSMUSG00000020524.16, intron 11 of 15) 101950 ENSMUSG00000020524.16 ENSMUSG00000020524 ENSMUST00000173531 Gria1 protein_coding Interval_130759 chr5 130210425 130212195 + 0 NA promoter-TSS (ENSMUSG00000025340.14) protein_coding-promoter-TSS (ENSMUSG00000025340.14) -2748 ENSMUSG00000094092.1 ENSMUSG00000094092 ENSMUST00000119542 Gm15921 processed_pseudogene Interval_60495 chr15 74390525 74390831 + 0 NA Intergenic Intergenic 49766 ENSMUSG00000118581.1 ENSMUSG00000118581 ENSMUST00000239328 AC119183.1 unitary_pseudogene Interval_102119 chr3 18049739 18050195 + 0 NA Intergenic Intergenic -4207 ENSMUSG00000025128.7 ENSMUSG00000025128 ENSMUST00000026120 Bhlhe22 protein_coding Interval_8541 chr1 141186759 141187400 + 0 NA Intergenic Intergenic 70078 ENSMUSG00000095238.2 ENSMUSG00000095238 ENSMUST00000179202 Gm4845 processed_pseudogene Interval_39269 chr12 86343953 86345003 + 0 NA Intergenic Intergenic -3499 ENSMUSG00000113230.1 ENSMUSG00000113230 ENSMUST00000221001 Gm48101 processed_pseudogene Interval_154100 chr8 12694276 12695223 + 0 NA Intergenic Intergenic 22322 ENSMUSG00000054910.5 ENSMUSG00000054910 ENSMUST00000131064 4931415C17Rik processed_transcript Interval_92483 chr2 60056203 60056562 + 0 NA intron (ENSMUSG00000026987.16, intron 1 of 34) protein_coding-intron (ENSMUSG00000026987.16, intron 1 of 34) 19241 ENSMUSG00000085975.1 ENSMUSG00000085975 ENSMUST00000153675 Gm13572 lincRNA Interval_3658 chr1 60459996 60462650 + 0 NA intron (ENSMUSG00000026782.15, intron 9 of 10) protein_coding-intron (ENSMUSG00000026782.15, intron 7 of 8) 41942 ENSMUSG00000026014.15 ENSMUSG00000026014 ENSMUST00000142258 Raph1 protein_coding Interval_8749 chr1 150414893 150415291 + 0 NA intron (ENSMUSG00000006005.18, intron 1 of 1) protein_coding-intron (ENSMUSG00000006005.18, intron 17 of 50) -22344 ENSMUSG00000006010.14 ENSMUSG00000006010 ENSMUST00000140112 Odr4 protein_coding Interval_172381 chrX 15846285 15847105 + 0 NA Intergenic Intergenic 50074 ENSMUSG00000070240.1 ENSMUSG00000070240 ENSMUST00000093728 Gm23516 snRNA Interval_62426 chr15 92449810 92450103 + 0 NA intron (ENSMUSG00000036218.16, intron 3 of 9) protein_coding-intron (ENSMUSG00000036218.16, intron 3 of 9) 105597 ENSMUSG00000097068.2 ENSMUSG00000097068 ENSMUST00000181901 Gm26760 lincRNA Interval_81665 chr18 62992080 62992635 + 0 NA TTS (ENSMUSG00000024581.13) protein_coding-TTS (ENSMUSG00000024581.13) 14510 ENSMUSG00000024581.13 ENSMUSG00000024581 ENSMUST00000236914 Napg protein_coding Interval_173435 chrX 93631687 93632647 + 0 NA promoter-TSS (ENSMUSG00000006678.6) protein_coding-promoter-TSS (ENSMUSG00000006678.6) -6447 ENSMUSG00000087255.2 ENSMUSG00000087255 ENSMUST00000121255 Gm6985 processed_pseudogene Interval_146299 chr7 45204081 45205125 + 0 NA exon (ENSMUSG00000038292.14, exon 1 of 20) protein_coding-exon (ENSMUSG00000038292.14, exon 1 of 20) 7209 ENSMUSG00000030792.8 ENSMUSG00000030792 ENSMUST00000210454 Dkkl1 protein_coding Interval_140825 chr6 121870258 121870509 + 0 NA intron (ENSMUSG00000059908.9, intron 15 of 26) protein_coding-intron (ENSMUSG00000059908.9, intron 15 of 35) 29279 ENSMUSG00000059908.9 ENSMUSG00000059908 ENSMUST00000204210 Mug1 protein_coding Interval_173868 chrX 106204614 106204859 + 0 NA Intergenic Intergenic 16014 ENSMUSG00000047242.14 ENSMUSG00000047242 ENSMUST00000134547 Taf9b protein_coding Interval_112977 chr4 46573804 46574304 + 0 NA TTS (ENSMUSG00000028337.14) protein_coding-TTS (ENSMUSG00000028337.14) 27837 ENSMUSG00000028337.14 ENSMUSG00000028337 ENSMUST00000127304 Coro2a protein_coding Interval_38097 chr12 75633910 75634240 + 0 NA intron (ENSMUSG00000045690.8, intron 1 of 1) protein_coding-intron (ENSMUSG00000045690.8, intron 1 of 1) -2757 ENSMUSG00000118552.1 ENSMUSG00000118552 ENSMUST00000238938 AC124742.1 protein_coding Interval_172059 chr9 124128359 124128817 + 0 NA promoter-TSS (ENSMUSG00000079227.10) protein_coding-promoter-TSS (ENSMUSG00000079227.10) 1904 ENSMUSG00000079227.10 ENSMUSG00000079227 ENSMUST00000097855 Ccr5 protein_coding Interval_6917 chr1 120643479 120645000 + 0 NA intron (ENSMUSG00000099957.4, intron 1 of 6) lincRNA-intron (ENSMUSG00000099957.4, intron 1 of 6) 22499 ENSMUSG00000099957.4 ENSMUSG00000099957 ENSMUST00000186982 2610027F03Rik lincRNA Interval_98604 chr2 153540607 153541454 + 0 NA Intergenic Intergenic 48240 ENSMUSG00000079001.1 ENSMUSG00000079001 ENSMUST00000109783 4930404H24Rik protein_coding Interval_25441 chr11 48588694 48589423 + 0 NA Intergenic Intergenic -6221 ENSMUSG00000082250.1 ENSMUSG00000082250 ENSMUST00000121448 Gm12181 processed_pseudogene Interval_136586 chr6 56148032 56148825 + 0 NA intron (ENSMUSG00000004347.17, intron 13 of 19) protein_coding-intron (ENSMUSG00000004347.17, intron 11 of 18) 24603 ENSMUSG00000106152.1 ENSMUSG00000106152 ENSMUST00000198921 Gm44413 miRNA Interval_138586 chr6 89622661 89623636 + 0 NA Intergenic Intergenic -20840 ENSMUSG00000000811.13 ENSMUSG00000000811 ENSMUST00000101171 Txnrd3 protein_coding Interval_173864 chrX 106171147 106172031 + 0 NA Intergenic Intergenic -4725 ENSMUSG00000081081.1 ENSMUSG00000081081 ENSMUST00000121548 Gm14856 processed_pseudogene Interval_155339 chr8 31882886 31883110 + 0 NA intron (ENSMUSG00000062991.9, intron 3 of 10) protein_coding-intron (ENSMUSG00000062991.9, intron 1 of 8) 35760 ENSMUSG00000118541.1 ENSMUSG00000118541 ENSMUST00000239000 AC132407.1 protein_coding Interval_85737 chr19 30197427 30198221 + 0 NA Intergenic Intergenic -35118 ENSMUSG00000024863.6 ENSMUSG00000024863 ENSMUST00000025797 Mbl2 protein_coding Interval_14613 chr10 37004150 37004488 + 0 NA Intergenic Intergenic 12553 ENSMUSG00000019777.16 ENSMUSG00000019777 ENSMUST00000123010 Hdac2 protein_coding Interval_91158 chr2 35557944 35559070 + 0 NA promoter-TSS (ENSMUSG00000086555.2) processed_transcript-promoter-TSS (ENSMUSG00000086555.2) -22 ENSMUSG00000086555.2 ENSMUSG00000086555 ENSMUST00000134679 Gm13446 processed_transcript Interval_156193 chr8 45840868 45841059 + 0 NA Intergenic Intergenic -21666 ENSMUSG00000085440.1 ENSMUSG00000085440 ENSMUST00000135116 Sorbs2os antisense Interval_112519 chr4 41760123 41760872 + 0 NA promoter-TSS (ENSMUSG00000073889.10) protein_coding-promoter-TSS (ENSMUSG00000073889.10) 4243 ENSMUSG00000036073.17 ENSMUSG00000036073 ENSMUST00000133106 Galt protein_coding Interval_51173 chr14 24447442 24447785 + 0 NA Intergenic Intergenic -1210 ENSMUSG00000114575.1 ENSMUSG00000114575 ENSMUST00000224174 Gm47814 lincRNA Interval_93823 chr2 77232533 77233541 + 0 NA intron (ENSMUSG00000042272.17, intron 4 of 11) protein_coding-intron (ENSMUSG00000042272.17, intron 4 of 17) 23386 ENSMUSG00000084087.1 ENSMUSG00000084087 ENSMUST00000117729 Gm13650 processed_pseudogene Interval_16047 chr10 60285345 60286277 + 0 NA intron (ENSMUSG00000004207.14, intron 1 of 13) protein_coding-intron (ENSMUSG00000004207.14, intron 1 of 13) 8183 ENSMUSG00000004207.14 ENSMUSG00000004207 ENSMUST00000165878 Psap protein_coding Interval_150377 chr7 110017866 110019329 + 0 NA intron (ENSMUSG00000066232.4, intron 1 of 7) protein_coding-intron (ENSMUSG00000066232.4, intron 1 of 24) 282 ENSMUSG00000066232.4 ENSMUSG00000066232 ENSMUST00000208408 Ipo7 protein_coding Interval_75553 chr17 67978732 67978970 + 0 NA intron (ENSMUSG00000024043.13, intron 1 of 17) protein_coding-intron (ENSMUSG00000024043.13, intron 1 of 17) -105803 ENSMUSG00000024043.13 ENSMUSG00000024043 ENSMUST00000170581 Arhgap28 protein_coding Interval_6118 chr1 97622548 97623418 + 0 NA exon (ENSMUSG00000044768.16, exon 3 of 3) protein_coding-exon (ENSMUSG00000044768.16, exon 3 of 3) -37848 ENSMUSG00000118489.1 ENSMUSG00000118489 ENSMUST00000238965 AC099860.1 processed_pseudogene Interval_17488 chr10 77201255 77202233 + 0 NA Intergenic Intergenic 57479 ENSMUSG00000078444.3 ENSMUSG00000078444 ENSMUST00000105408 Gm10941 bidirectional_promoter_lncRNA Interval_21670 chr11 3587541 3588413 + 0 NA Intergenic Intergenic 37871 ENSMUSG00000084211.1 ENSMUSG00000084211 ENSMUST00000117640 Gm11949 processed_pseudogene Interval_119572 chr4 138444302 138445400 + 0 NA Intergenic Intergenic -9463 ENSMUSG00000046447.3 ENSMUSG00000046447 ENSMUST00000050918 Camk2n1 protein_coding Interval_102900 chr3 32650711 32651054 + 0 NA Intergenic Intergenic -34403 ENSMUSG00000027669.14 ENSMUSG00000027669 ENSMUST00000143588 Gnb4 protein_coding Interval_50828 chr14 20082192 20083517 + 0 NA intron (ENSMUSG00000045107.5, intron 1 of 1) protein_coding-intron (ENSMUSG00000045107.5, intron 1 of 1) -24557 ENSMUSG00000114498.1 ENSMUSG00000114498 ENSMUST00000224881 Gm48339 processed_pseudogene Interval_67406 chr16 48366521 48367052 + 0 NA Intergenic Intergenic -1856 ENSMUSG00000116889.1 ENSMUSG00000116889 ENSMUST00000231810 Gm49771 processed_pseudogene Interval_33446 chr11 116580630 116581940 + 0 NA exon (ENSMUSG00000020802.8, exon 1 of 18) protein_coding-exon (ENSMUSG00000020802.8, exon 1 of 18) -12402 ENSMUSG00000020804.12 ENSMUSG00000020804 ENSMUST00000132601 Aanat protein_coding Interval_113212 chr4 50208832 50209828 + 0 NA Intergenic Intergenic -77416 ENSMUSG00000095394.1 ENSMUSG00000095394 ENSMUST00000104120 Gm25485 snoRNA Interval_63485 chr15 101370511 101370727 + 0 NA promoter-TSS (ENSMUSG00000037185.9) protein_coding-promoter-TSS (ENSMUSG00000037185.9) 1267 ENSMUSG00000088459.1 ENSMUSG00000088459 ENSMUST00000157834 Mir1941 miRNA Interval_155968 chr8 41327090 41327419 + 0 NA intron (ENSMUSG00000031592.10, intron 34 of 38) protein_coding-intron (ENSMUSG00000031592.10, intron 33 of 37) 47519 ENSMUSG00000031591.14 ENSMUSG00000031591 ENSMUST00000143057 Asah1 protein_coding Interval_112513 chr4 41712120 41714513 + 0 NA intron (ENSMUSG00000036114.3, intron 1 of 1) protein_coding-intron (ENSMUSG00000036114.3, intron 1 of 1) 218 ENSMUSG00000036114.3 ENSMUSG00000036114 ENSMUST00000038434 Rpp25l protein_coding Interval_18031 chr10 81455415 81456080 + 0 NA promoter-TSS (ENSMUSG00000055053.18) protein_coding-promoter-TSS (ENSMUSG00000055053.18) -112 ENSMUSG00000055053.18 ENSMUSG00000055053 ENSMUST00000221817 Nfic protein_coding Interval_133409 chr6 4786846 4787090 + 0 NA Intergenic Intergenic 16068 ENSMUSG00000107977.1 ENSMUSG00000107977 ENSMUST00000205169 Gm44121 TEC Interval_143901 chr7 17038505 17039667 + 0 NA intron (ENSMUSG00000004328.15, intron 13 of 14) protein_coding-intron (ENSMUSG00000004328.15, intron 13 of 14) -11192 ENSMUSG00000003099.11 ENSMUSG00000003099 ENSMUST00000145997 Ppp5c protein_coding Interval_3952 chr1 65046332 65046624 + 0 NA Intergenic Intergenic 4641 ENSMUSG00000070870.6 ENSMUSG00000070870 ENSMUST00000161960 Cryge protein_coding Interval_52877 chr14 51550101 51550336 + 0 NA intron (ENSMUSG00000068399.5, intron 6 of 6) protein_coding-intron (ENSMUSG00000068399.5, intron 6 of 6) -2572 ENSMUSG00000079244.3 ENSMUSG00000079244 ENSMUST00000096170 Gm5622 protein_coding Interval_63799 chr15 103513785 103514826 + 0 NA promoter-TSS (ENSMUSG00000022489.6) protein_coding-promoter-TSS (ENSMUSG00000022489.6) -615 ENSMUSG00000022489.6 ENSMUSG00000022489 ENSMUST00000227925 Pde1b protein_coding Interval_170525 chr9 108523249 108523451 + 0 NA intron (ENSMUSG00000006673.14, intron 2 of 2) protein_coding-intron (ENSMUSG00000006673.14, intron 2 of 10) 6544 ENSMUSG00000006673.14 ENSMUSG00000006673 ENSMUST00000194387 Qrich1 protein_coding Interval_39940 chr12 99952814 99953378 + 0 NA intron (ENSMUSG00000021177.16, intron 15 of 15) protein_coding-intron (ENSMUSG00000021177.16, intron 14 of 14) -11403 ENSMUSG00000045404.16 ENSMUSG00000045404 ENSMUST00000049788 Kcnk13 protein_coding Interval_56518 chr14 119798962 119799175 + 0 NA promoter-TSS (ENSMUSG00000115639.1) sense_intronic-promoter-TSS (ENSMUSG00000115639.1) 90 ENSMUSG00000115639.1 ENSMUSG00000115639 ENSMUST00000228885 4930404K13Rik sense_intronic Interval_161331 chr8 119792015 119792220 + 0 NA Intergenic Intergenic -13723 ENSMUSG00000034105.9 ENSMUSG00000034105 ENSMUST00000212534 Meak7 protein_coding Interval_1067 chr1 14754970 14757530 + 0 NA promoter-TSS (ENSMUSG00000025930.6) protein_coding-promoter-TSS (ENSMUSG00000025930.6) -897 ENSMUSG00000025930.6 ENSMUSG00000025930 ENSMUST00000190471 Msc protein_coding Interval_39189 chr12 85686670 85688084 + 0 NA intron (ENSMUSG00000034266.6, intron 1 of 2) protein_coding-intron (ENSMUSG00000034266.6, intron 1 of 2) -1915 ENSMUSG00000034266.6 ENSMUSG00000034266 ENSMUST00000222781 Batf protein_coding Interval_80651 chr18 45324641 45325300 + 0 NA intron (ENSMUSG00000054477.16, intron 1 of 10) protein_coding-intron (ENSMUSG00000054477.16, intron 1 of 10) -38850 ENSMUSG00000073569.2 ENSMUSG00000073569 ENSMUST00000097581 Gm10540 processed_pseudogene Interval_34495 chr12 4614957 4616081 + 0 NA intron (ENSMUSG00000020640.10, intron 2 of 39) protein_coding-intron (ENSMUSG00000020640.10, intron 2 of 38) -22490 ENSMUSG00000118449.1 ENSMUSG00000118449 ENSMUST00000170816 AC241534.1 bidirectional_promoter_lncRNA Interval_8389 chr1 138619040 138620296 + 0 NA promoter-TSS (ENSMUSG00000026393.10) protein_coding-promoter-TSS (ENSMUSG00000026393.10) 36 ENSMUSG00000026393.10 ENSMUSG00000026393 ENSMUST00000191549 Nek7 protein_coding Interval_68037 chr16 64507198 64507564 + 0 NA intron (ENSMUSG00000068167.6, intron 1 of 2) protein_coding-intron (ENSMUSG00000068167.6, intron 1 of 2) 95027 ENSMUSG00000068167.6 ENSMUSG00000068167 ENSMUST00000089279 Csnka2ip protein_coding Interval_17504 chr10 77293873 77294081 + 0 NA exon (ENSMUSG00000020262.15, exon 11 of 11) protein_coding-exon (ENSMUSG00000020262.15, exon 11 of 11) 31529 ENSMUSG00000020260.9 ENSMUSG00000020260 ENSMUST00000218117 Pofut2 protein_coding Interval_2599 chr1 41542431 41542679 + 0 NA Intergenic Intergenic -13012 ENSMUSG00000100185.1 ENSMUSG00000100185 ENSMUST00000191087 Gm28634 lincRNA Interval_44644 chr13 46905142 46906230 + 0 NA intron (ENSMUSG00000021375.11, intron 2 of 2) protein_coding-intron (ENSMUSG00000021375.11, intron 2 of 37) 3097 ENSMUSG00000084466.1 ENSMUSG00000084466 ENSMUST00000122517 Gm22960 snRNA Interval_61491 chr15 81956624 81956934 + 0 NA TTS (ENSMUSG00000022474.15) protein_coding-TTS (ENSMUSG00000022474.15) 4054 ENSMUSG00000022474.15 ENSMUSG00000022474 ENSMUST00000147442 Pmm1 protein_coding Interval_133802 chr6 12384115 12384467 + 0 NA intron (ENSMUSG00000032625.14, intron 11 of 27) protein_coding-intron (ENSMUSG00000032625.14, intron 11 of 27) -181227 ENSMUSG00000083794.1 ENSMUSG00000083794 ENSMUST00000118647 Gm16123 processed_pseudogene Interval_157299 chr8 69130847 69131931 + 0 NA Intergenic Intergenic -42154 ENSMUSG00000036330.12 ENSMUSG00000036330 ENSMUST00000142710 Slc18a1 protein_coding Interval_119484 chr4 137868147 137868557 + 0 NA intron (ENSMUSG00000057530.14, intron 1 of 1) protein_coding-intron (ENSMUSG00000057530.14, intron 1 of 19) 15585 ENSMUSG00000085823.7 ENSMUSG00000085823 ENSMUST00000156022 Gm13012 antisense Interval_101797 chr3 9599568 9601502 + 0 NA intron (ENSMUSG00000040209.12, intron 1 of 8) protein_coding-intron (ENSMUSG00000040209.12, intron 1 of 8) -35236 ENSMUSG00000040209.12 ENSMUSG00000040209 ENSMUST00000192832 Zfp704 protein_coding Interval_44601 chr13 46632760 46634024 + 0 NA intron (ENSMUSG00000021373.16, intron 6 of 11) protein_coding-intron (ENSMUSG00000021373.16, intron 7 of 12) -13612 ENSMUSG00000114596.1 ENSMUSG00000114596 ENSMUST00000225040 Gm47523 antisense Interval_76269 chr17 78624351 78625303 + 0 NA exon (ENSMUSG00000024076.10, exon 13 of 14) protein_coding-exon (ENSMUSG00000024076.10, exon 13 of 14) 50899 ENSMUSG00000024076.10 ENSMUSG00000024076 ENSMUST00000232864 Vit protein_coding Interval_71113 chr17 18523463 18524282 + 0 NA Intergenic Intergenic 30121 ENSMUSG00000093775.2 ENSMUSG00000093775 ENSMUST00000177016 Vmn2r-ps114 unprocessed_pseudogene Interval_7439 chr1 131359800 131360308 + 0 NA intron (ENSMUSG00000026425.15, intron 5 of 21) protein_coding-intron (ENSMUSG00000026425.15, intron 5 of 22) -17371 ENSMUSG00000102733.1 ENSMUSG00000102733 ENSMUST00000194760 Gm38262 TEC Interval_144475 chr7 25356123 25356773 + 0 NA intron (ENSMUSG00000045039.9, intron 11 of 17) protein_coding-intron (ENSMUSG00000045039.9, intron 34 of 40) 10467 ENSMUSG00000045039.9 ENSMUSG00000045039 ENSMUST00000153077 Megf8 protein_coding Interval_1928 chr1 34603985 34604636 + 0 NA Intergenic Intergenic 3409 ENSMUSG00000100524.1 ENSMUSG00000100524 ENSMUST00000186179 Gm28418 processed_pseudogene Interval_60400 chr15 73512081 73513352 + 0 NA promoter-TSS (ENSMUSG00000036661.14) protein_coding-promoter-TSS (ENSMUSG00000036661.14) 44 ENSMUSG00000036661.14 ENSMUSG00000036661 ENSMUST00000160727 Dennd3 protein_coding Interval_56474 chr14 118998683 118998987 + 0 NA intron (ENSMUSG00000042104.18, intron 1 of 3) protein_coding-intron (ENSMUSG00000042104.18, intron 3 of 4) -15075 ENSMUSG00000115220.1 ENSMUSG00000115220 ENSMUST00000227218 Gm49768 lincRNA Interval_128110 chr5 111024381 111024642 + 0 NA intron (ENSMUSG00000033209.17, intron 2 of 22) protein_coding-intron (ENSMUSG00000033209.17, intron 2 of 23) -4041 ENSMUSG00000105890.1 ENSMUSG00000105890 ENSMUST00000197083 Gm42780 TEC Interval_309 chr1 3482407 3483872 + 0 NA intron (ENSMUSG00000089699.1, intron 1 of 1) protein_coding-intron (ENSMUSG00000051951.5, intron 1 of 2) -15854 ENSMUSG00000103025.1 ENSMUSG00000103025 ENSMUST00000194099 Gm37686 TEC Interval_113581 chr4 56829848 56830254 + 0 NA promoter-TSS (ENSMUSG00000038816.14) protein_coding-promoter-TSS (ENSMUSG00000038816.14) 8533 ENSMUSG00000038816.14 ENSMUSG00000038816 ENSMUST00000132764 Ctnnal1 protein_coding Interval_150178 chr7 107644587 107645252 + 0 NA intron (ENSMUSG00000036528.16, intron 2 of 5) protein_coding-intron (ENSMUSG00000036528.16, intron 2 of 24) -19758 ENSMUSG00000049740.2 ENSMUSG00000049740 ENSMUST00000060348 5330417H12Rik TEC Interval_25082 chr11 43747485 43748302 + 0 NA promoter-TSS (ENSMUSG00000041278.10) protein_coding-promoter-TSS (ENSMUSG00000041278.10) 99 ENSMUSG00000041278.10 ENSMUSG00000041278 ENSMUST00000147984 Ttc1 protein_coding Interval_105657 chr3 88409600 88411020 + 0 NA promoter-TSS (ENSMUSG00000028066.15) protein_coding-promoter-TSS (ENSMUSG00000028066.15) -10600 ENSMUSG00000028066.15 ENSMUSG00000028066 ENSMUST00000191622 Pmf1 protein_coding Interval_79108 chr18 24618937 24619754 + 0 NA intron (ENSMUSG00000024271.8, intron 10 of 21) protein_coding-intron (ENSMUSG00000024271.8, intron 7 of 18) -15830 ENSMUSG00000024270.11 ENSMUSG00000024270 ENSMUST00000152504 Slc39a6 protein_coding Interval_163827 chr9 26960329 26960795 + 0 NA exon (ENSMUSG00000111151.1, exon 1 of 1) processed_pseudogene-exon (ENSMUSG00000111151.1, exon 1 of 1) 1997 ENSMUSG00000111151.1 ENSMUSG00000111151 ENSMUST00000215231 Gm5120 processed_pseudogene Interval_37484 chr12 69296389 69297579 + 0 NA exon (ENSMUSG00000020978.10, exon 1 of 13) protein_coding-exon (ENSMUSG00000020978.10, exon 1 of 13) -5417 ENSMUSG00000020978.10 ENSMUSG00000020978 ENSMUST00000154667 Klhdc2 protein_coding Interval_126347 chr5 86851374 86852575 + 0 NA Intergenic Intergenic 11532 ENSMUSG00000105309.1 ENSMUSG00000105309 ENSMUST00000200382 Gm21461 unprocessed_pseudogene Interval_70767 chr17 14258300 14259501 + 0 NA intron (ENSMUSG00000117254.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000117254.1, intron 1 of 2) 9049 ENSMUSG00000117254.1 ENSMUSG00000117254 ENSMUST00000233271 Gm34567 lincRNA Interval_55433 chr14 87214621 87215458 + 0 NA Intergenic Intergenic -14965 ENSMUSG00000102284.1 ENSMUSG00000102284 ENSMUST00000194560 Gm37002 TEC Interval_70145 chr17 5795603 5796549 + 0 NA Intergenic Intergenic -3415 ENSMUSG00000096965.7 ENSMUSG00000096965 ENSMUST00000181392 3300005D01Rik lincRNA Interval_161803 chr8 122896230 122896910 + 0 NA TTS (ENSMUSG00000110440.1) antisense-TTS (ENSMUSG00000110440.1) 26021 ENSMUSG00000110440.1 ENSMUSG00000110440 ENSMUST00000212728 Gm45894 antisense Interval_31028 chr11 97793098 97794920 + 0 NA Intergenic Intergenic -11647 ENSMUSG00000071415.6 ENSMUSG00000071415 ENSMUST00000128801 Rpl23 protein_coding Interval_108725 chr3 130738289 130738927 + 0 NA intron (ENSMUSG00000105789.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000105789.1, intron 1 of 1) 8148 ENSMUSG00000105789.1 ENSMUSG00000105789 ENSMUST00000196074 Gm42997 lincRNA Interval_38648 chr12 80789793 80791781 + 0 NA promoter-TSS (ENSMUSG00000112093.1) bidirectional_promoter_lncRNA-promoter-TSS (ENSMUSG00000112093.1) 277 ENSMUSG00000021133.9 ENSMUSG00000021133 ENSMUST00000219720 Susd6 protein_coding Interval_75065 chr17 62802662 62802928 + 0 NA intron (ENSMUSG00000048915.12, intron 1 of 3) protein_coding-intron (ENSMUSG00000048915.12, intron 1 of 4) 78349 ENSMUSG00000048915.12 ENSMUSG00000048915 ENSMUST00000078839 Efna5 protein_coding Interval_163354 chr9 21029196 21032244 + 0 NA TTS (ENSMUSG00000001014.6) protein_coding-TTS (ENSMUSG00000001014.6) 1266 ENSMUSG00000001014.6 ENSMUSG00000001014 ENSMUST00000215077 Icam4 protein_coding Interval_39054 chr12 84724023 84724702 + 0 NA Intergenic Intergenic -25608 ENSMUSG00000071234.3 ENSMUSG00000071234 ENSMUST00000221793 Syndig1l protein_coding Interval_172530 chrX 35834583 35834893 + 0 NA Intergenic Intergenic -3389 ENSMUSG00000087847.1 ENSMUSG00000087847 ENSMUST00000157222 Gm25624 scaRNA Interval_95329 chr2 106628552 106628773 + 0 NA Intergenic Intergenic 21672 ENSMUSG00000085218.7 ENSMUSG00000085218 ENSMUST00000139514 BB218582 processed_transcript Interval_104323 chr3 63376514 63377180 + 0 NA intron (ENSMUSG00000027820.12, intron 22 of 22) protein_coding-intron (ENSMUSG00000027820.12, intron 22 of 22) -62404 ENSMUSG00000104336.1 ENSMUSG00000104336 ENSMUST00000192500 Gm34240 lincRNA Interval_142934 chr6 147075702 147077240 + 0 NA intron (ENSMUSG00000072662.2, intron 2 of 2) protein_coding-intron (ENSMUSG00000072662.2, intron 2 of 2) 10530 ENSMUSG00000072662.2 ENSMUSG00000072662 ENSMUST00000123367 Mansc4 protein_coding Interval_160632 chr8 111203941 111204360 + 0 NA intron (ENSMUSG00000003316.14, intron 1 of 25) protein_coding-intron (ENSMUSG00000003316.14, intron 1 of 24) 9186 ENSMUSG00000076382.1 ENSMUSG00000076382 ENSMUST00000102427 Gm23193 miRNA Interval_55899 chr14 101886657 101887856 + 0 NA exon (ENSMUSG00000033060.16, exon 10 of 31) protein_coding-exon (ENSMUSG00000033060.16, exon 10 of 31) 46749 ENSMUSG00000033060.16 ENSMUSG00000033060 ENSMUST00000160038 Lmo7 protein_coding Interval_2396 chr1 38968973 38970100 + 0 NA Intergenic Intergenic -18329 ENSMUSG00000026078.10 ENSMUSG00000026078 ENSMUST00000193073 Pdcl3 protein_coding Interval_102249 chr3 20002780 20003424 + 0 NA intron (ENSMUSG00000027615.14, intron 6 of 7) protein_coding-intron (ENSMUSG00000003617.16, intron 18 of 19) 32192 ENSMUSG00000027615.14 ENSMUSG00000027615 ENSMUST00000133094 Hps3 protein_coding Interval_23978 chr11 29139522 29139927 + 0 NA intron (ENSMUSG00000020464.15, intron 10 of 26) protein_coding-intron (ENSMUSG00000020464.15, intron 10 of 27) 8980 ENSMUSG00000020464.15 ENSMUSG00000020464 ENSMUST00000131527 Pnpt1 protein_coding Interval_120386 chr4 148249283 148250049 + 0 NA intron (ENSMUSG00000041544.11, intron 16 of 20) protein_coding-intron (ENSMUSG00000041544.11, intron 16 of 20) 11085 ENSMUSG00000041544.11 ENSMUSG00000041544 ENSMUST00000129734 Disp3 protein_coding Interval_169628 chr9 99539415 99539944 + 0 NA intron (ENSMUSG00000032468.11, intron 1 of 10) protein_coding-intron (ENSMUSG00000032468.11, intron 2 of 21) 28984 ENSMUSG00000032468.11 ENSMUSG00000032468 ENSMUST00000191370 Armc8 protein_coding Interval_100150 chr2 167342064 167343578 + 0 NA intron (ENSMUSG00000017929.13, intron 1 of 8) protein_coding-intron (ENSMUSG00000017929.13, intron 1 of 8) -28966 ENSMUSG00000017929.13 ENSMUSG00000017929 ENSMUST00000133557 B4galt5 protein_coding Interval_116192 chr4 108578713 108580227 + 0 NA promoter-TSS (ENSMUSG00000063800.5) protein_coding-promoter-TSS (ENSMUSG00000063800.5) -8552 ENSMUSG00000028587.18 ENSMUSG00000028587 ENSMUST00000129931 Orc1 protein_coding Interval_26321 chr11 56148833 56149185 + 0 NA Intergenic Intergenic -107999 ENSMUSG00000037393.2 ENSMUSG00000037393 ENSMUST00000037682 Nmur2 protein_coding Interval_138997 chr6 94128698 94129473 + 0 NA intron (ENSMUSG00000045095.16, intron 1 of 24) protein_coding-intron (ENSMUSG00000045095.16, intron 1 of 21) 194949 ENSMUSG00000107545.1 ENSMUSG00000107545 ENSMUST00000204466 Gm44307 processed_pseudogene Interval_53106 chr14 54492194 54493078 + 0 NA Intergenic Intergenic 16396 ENSMUSG00000022176.11 ENSMUSG00000022176 ENSMUST00000168930 Rem2 protein_coding Interval_62713 chr15 96417842 96418099 + 0 NA intron (ENSMUSG00000033228.8, intron 1 of 4) protein_coding-intron (ENSMUSG00000033228.8, intron 11 of 14) 13112 ENSMUSG00000093529.1 ENSMUSG00000093529 ENSMUST00000176951 Gm25397 miRNA Interval_70200 chr17 6127044 6128525 + 0 NA intron (ENSMUSG00000034377.10, intron 2 of 2) protein_coding-intron (ENSMUSG00000034377.10, intron 1 of 5) 4160 ENSMUSG00000076038.1 ENSMUSG00000076038 ENSMUST00000102084 Gm22774 miRNA Interval_13823 chr10 23087045 23087252 + 0 NA Intergenic Intergenic 79823 ENSMUSG00000094033.1 ENSMUSG00000094033 ENSMUST00000178790 Gm24655 snRNA Interval_28036 chr11 72390721 72391617 + 0 NA exon (ENSMUSG00000045667.14, exon 8 of 8) protein_coding-exon (ENSMUSG00000045667.14, exon 8 of 8) 2413 ENSMUSG00000098658.1 ENSMUSG00000098658 ENSMUST00000183389 Mir6338 miRNA Interval_155418 chr8 33459800 33460104 + 0 NA Intergenic Intergenic -24244 ENSMUSG00000109750.1 ENSMUSG00000109750 ENSMUST00000210634 Hmgb1-rs17 unprocessed_pseudogene Interval_103825 chr3 53447842 53449294 + 0 NA TTS (ENSMUSG00000042997.13) protein_coding-TTS (ENSMUSG00000042997.13) -4051 ENSMUSG00000085174.1 ENSMUSG00000085174 ENSMUST00000132485 Gm16206 antisense Interval_47439 chr13 84261672 84262066 + 0 NA intron (ENSMUSG00000035762.11, intron 4 of 4) protein_coding-intron (ENSMUSG00000035762.11, intron 4 of 11) 10598 ENSMUSG00000035762.11 ENSMUSG00000035762 ENSMUST00000225708 Tmem161b protein_coding Interval_145540 chr7 35488892 35489477 + 0 NA intron (ENSMUSG00000030491.16, intron 15 of 29) protein_coding-intron (ENSMUSG00000030491.16, intron 14 of 25) 10533 ENSMUSG00000100068.1 ENSMUSG00000100068 ENSMUST00000186253 Gm18558 processed_pseudogene Interval_30526 chr11 94944140 94944719 + 0 NA promoter-TSS (ENSMUSG00000001506.10) protein_coding-promoter-TSS (ENSMUSG00000001506.10) 5417 ENSMUSG00000001506.10 ENSMUSG00000001506 ENSMUST00000148046 Col1a1 protein_coding Interval_130398 chr5 127313606 127314003 + 0 NA intron (ENSMUSG00000034324.16, intron 1 of 8) protein_coding-intron (ENSMUSG00000034324.16, intron 1 of 8) 4787 ENSMUSG00000104971.1 ENSMUSG00000104971 ENSMUST00000196548 9430087B13Rik TEC Interval_9230 chr1 155250575 155251111 + 0 NA Intergenic Intergenic 19539 ENSMUSG00000103670.1 ENSMUSG00000103670 ENSMUST00000192162 Gm37622 antisense Interval_147779 chr7 73518784 73520072 + 0 NA intron (ENSMUSG00000078671.11, intron 2 of 4) protein_coding-intron (ENSMUSG00000078671.11, intron 3 of 8) 9297 ENSMUSG00000108812.1 ENSMUSG00000108812 ENSMUST00000205707 C130083A15Rik TEC Interval_41925 chr13 4572132 4572362 + 0 NA Intergenic Intergenic -1828 ENSMUSG00000021207.9 ENSMUSG00000021207 ENSMUST00000137279 Akr1c21 protein_coding Interval_2964 chr1 51687741 51688311 + 0 NA Intergenic Intergenic 9874 ENSMUSG00000101741.1 ENSMUSG00000101741 ENSMUST00000186769 Gm28055 lincRNA Interval_109762 chr3 146694951 146695374 + 0 NA Intergenic Intergenic -1057 ENSMUSG00000105529.1 ENSMUSG00000105529 ENSMUST00000198038 Gm9480 processed_pseudogene Interval_12849 chr10 6465652 6466097 + 0 NA Intergenic Intergenic 43176 ENSMUSG00000112312.1 ENSMUSG00000112312 ENSMUST00000217959 Gm47755 processed_pseudogene Interval_30514 chr11 94869970 94870787 + 0 NA Intergenic Intergenic -8619 ENSMUSG00000043522.8 ENSMUSG00000043522 ENSMUST00000124176 A430060F13Rik unprocessed_pseudogene Interval_140371 chr6 117551869 117553610 + 0 NA Intergenic Intergenic -14933 ENSMUSG00000054488.14 ENSMUSG00000054488 ENSMUST00000165995 Gm9946 lincRNA Interval_80381 chr18 40615444 40616436 + 0 NA Intergenic Intergenic 76154 ENSMUSG00000118202.1 ENSMUSG00000118202 ENSMUST00000237191 C030017B01Rik lincRNA Interval_29605 chr11 85323596 85324467 + 0 NA intron (ENSMUSG00000020525.17, intron 1 of 3) protein_coding-intron (ENSMUSG00000020525.17, intron 1 of 5) 11867 ENSMUSG00000020525.17 ENSMUSG00000020525 ENSMUST00000127717 Ppm1d protein_coding Interval_85585 chr19 28838815 28839156 + 0 NA intron (ENSMUSG00000024935.11, intron 1 of 1) protein_coding-intron (ENSMUSG00000024935.11, intron 1 of 11) 3850 ENSMUSG00000024935.11 ENSMUSG00000024935 ENSMUST00000162189 Slc1a1 protein_coding Interval_69138 chr16 90890570 90891043 + 0 NA TTS (ENSMUSG00000039903.18) protein_coding-TTS (ENSMUSG00000039903.18) -24374 ENSMUSG00000083226.2 ENSMUSG00000083226 ENSMUST00000117990 Gm7831 processed_pseudogene Interval_15004 chr10 41860168 41860607 + 0 NA intron (ENSMUSG00000038332.13, intron 1 of 9) protein_coding-intron (ENSMUSG00000038332.13, intron 1 of 9) 33849 ENSMUSG00000111131.1 ENSMUSG00000111131 ENSMUST00000214902 9930024M15Rik TEC Interval_9819 chr1 162664871 162666022 + 0 NA Intergenic Intergenic -7340 ENSMUSG00000091060.2 ENSMUSG00000091060 ENSMUST00000169439 Myocos protein_coding Interval_20542 chr10 118744694 118745628 + 0 NA Intergenic Intergenic -25733 ENSMUSG00000112535.1 ENSMUSG00000112535 ENSMUST00000219645 Gm47425 lincRNA Interval_160319 chr8 108220835 108223397 + 0 NA intron (ENSMUSG00000038872.10, intron 3 of 4) protein_coding-intron (ENSMUSG00000038872.10, intron 2 of 15) 227557 ENSMUSG00000038872.10 ENSMUSG00000038872 ENSMUST00000043896 Zfhx3 protein_coding Interval_127166 chr5 100765349 100767442 + 0 NA promoter-TSS (ENSMUSG00000035266.16) protein_coding-promoter-TSS (ENSMUSG00000035266.16) 26331 ENSMUSG00000035266.16 ENSMUSG00000035266 ENSMUST00000144948 Helq protein_coding Interval_80923 chr18 50206350 50206537 + 0 NA Intergenic Intergenic 2701 ENSMUSG00000117714.1 ENSMUSG00000117714 ENSMUST00000238008 Gm50439 processed_pseudogene Interval_16128 chr10 60884912 60886465 + 0 NA Intergenic Intergenic -37335 ENSMUSG00000099279.1 ENSMUSG00000099279 ENSMUST00000183643 Mir6408 miRNA Interval_133610 chr6 7605128 7605419 + 0 NA Intergenic Intergenic -38633 ENSMUSG00000099182.1 ENSMUSG00000099182 ENSMUST00000184206 Gm8676 processed_pseudogene Interval_86999 chr19 45456600 45457302 + 0 NA exon (ENSMUSG00000025217.15, exon 5 of 5) protein_coding-exon (ENSMUSG00000025217.15, exon 5 of 5) -5756 ENSMUSG00000057605.4 ENSMUSG00000057605 ENSMUST00000077435 Gm6807 processed_pseudogene Interval_124885 chr5 59005123 59005293 + 0 NA Intergenic Intergenic -4215 ENSMUSG00000106509.1 ENSMUSG00000106509 ENSMUST00000198671 Gm43394 processed_pseudogene Interval_22986 chr11 18492604 18494739 + 0 NA promoter-TSS (ENSMUSG00000085675.1) lincRNA-promoter-TSS (ENSMUSG00000085675.1) -416 ENSMUSG00000085675.1 ENSMUSG00000085675 ENSMUST00000143311 Gm12022 lincRNA Interval_134494 chr6 29128269 29128766 + 0 NA exon (ENSMUSG00000029701.15, exon 17 of 19) protein_coding-exon (ENSMUSG00000029701.15, exon 17 of 19) -14911 ENSMUSG00000064436.1 ENSMUSG00000064436 ENSMUST00000082502 Gm25589 snRNA Interval_43793 chr13 36512872 36514905 + 0 NA intron (ENSMUSG00000021420.13, intron 6 of 7) protein_coding-intron (ENSMUSG00000021420.13, intron 6 of 6) 45177 ENSMUSG00000114581.1 ENSMUSG00000114581 ENSMUST00000223824 Gm8277 processed_pseudogene Interval_49357 chr13 111443764 111444010 + 0 NA intron (ENSMUSG00000032745.18, intron 2 of 5) protein_coding-intron (ENSMUSG00000032745.18, intron 7 of 12) 9536 ENSMUSG00000032745.18 ENSMUSG00000032745 ENSMUST00000129638 Gpbp1 protein_coding Interval_169525 chr9 98887911 98888190 + 0 NA promoter-TSS (ENSMUSG00000110788.1) processed_pseudogene-promoter-TSS (ENSMUSG00000110788.1) -161 ENSMUSG00000110788.1 ENSMUSG00000110788 ENSMUST00000215123 Gm33700 processed_pseudogene Interval_102597 chr3 28164806 28165792 + 0 NA Intergenic Intergenic -11254 ENSMUSG00000109716.1 ENSMUSG00000109716 ENSMUST00000209618 Gm42196 lincRNA Interval_142437 chr6 142275884 142276262 + 0 NA promoter-TSS (ENSMUSG00000063975.13) protein_coding-promoter-TSS (ENSMUSG00000063975.13) -505 ENSMUSG00000063975.13 ENSMUSG00000063975 ENSMUST00000128446 Slco1a5 protein_coding Interval_154061 chr8 12406108 12406308 + 0 NA intron (ENSMUSG00000047935.17, intron 1 of 6) sense_overlapping-intron (ENSMUSG00000047935.17, intron 1 of 8) 9805 ENSMUSG00000092656.1 ENSMUSG00000092656 ENSMUST00000174915 Gm25239 miRNA Interval_167305 chr9 67184688 67184878 + 0 NA intron (ENSMUSG00000111556.1, intron 2 of 2) lincRNA-intron (ENSMUSG00000111556.1, intron 2 of 2) 51222 ENSMUSG00000111556.1 ENSMUSG00000111556 ENSMUST00000215724 Gm19299 lincRNA Interval_124319 chr5 43891814 43892628 + 0 NA intron (ENSMUSG00000029084.5, intron 1 of 7) protein_coding-intron (ENSMUSG00000029084.5, intron 1 of 7) 16191 ENSMUSG00000086479.2 ENSMUSG00000086479 ENSMUST00000123363 Gm16014 sense_intronic Interval_133799 chr6 12368796 12369909 + 0 NA intron (ENSMUSG00000032625.14, intron 13 of 27) protein_coding-intron (ENSMUSG00000032625.14, intron 13 of 27) -196166 ENSMUSG00000083794.1 ENSMUSG00000083794 ENSMUST00000118647 Gm16123 processed_pseudogene Interval_172698 chrX 43427167 43429194 + 0 NA intron (ENSMUSG00000016150.15, intron 1 of 9) protein_coding-intron (ENSMUSG00000016150.15, intron 1 of 2) 823 ENSMUSG00000016150.15 ENSMUSG00000016150 ENSMUST00000125231 Tenm1 protein_coding Interval_86863 chr19 44456722 44457770 + 0 NA intron (ENSMUSG00000117796.1, intron 2 of 4) lincRNA-intron (ENSMUSG00000117796.1, intron 2 of 4) 4229 ENSMUSG00000117796.1 ENSMUSG00000117796 ENSMUST00000237075 Gm35406 lincRNA Interval_170771 chr9 110656155 110656895 + 0 NA promoter-TSS (ENSMUSG00000019659.8) protein_coding-promoter-TSS (ENSMUSG00000019659.8) 846 ENSMUSG00000105127.1 ENSMUSG00000105127 ENSMUST00000198086 Gm42470 lincRNA Interval_28431 chr11 75832427 75833263 + 0 NA intron (ENSMUSG00000020847.15, intron 8 of 8) protein_coding-intron (ENSMUSG00000020847.15, intron 7 of 7) -28124 ENSMUSG00000087322.1 ENSMUSG00000087322 ENSMUST00000135873 Gm16075 antisense Interval_25373 chr11 46846479 46847256 + 0 NA Intergenic Intergenic -27546 ENSMUSG00000082818.1 ENSMUSG00000082818 ENSMUST00000122081 Gm12175 processed_pseudogene Interval_37521 chr12 69543743 69544551 + 0 NA Intergenic Intergenic 17190 ENSMUSG00000095776.1 ENSMUSG00000095776 ENSMUST00000177928 Gm23018 miRNA Interval_33793 chr11 118545697 118545972 + 0 NA intron (ENSMUSG00000025576.17, intron 3 of 13) protein_coding-intron (ENSMUSG00000025576.17, intron 4 of 14) -38481 ENSMUSG00000025576.17 ENSMUSG00000025576 ENSMUST00000134774 Rbfox3 protein_coding Interval_93299 chr2 71760598 71761652 + 0 NA intron (ENSMUSG00000027111.16, intron 2 of 5) protein_coding-intron (ENSMUSG00000027111.16, intron 2 of 5) 1642 ENSMUSG00000081878.1 ENSMUSG00000081878 ENSMUST00000118020 Gm13739 processed_pseudogene Interval_147332 chr7 65898551 65899068 + 0 NA intron (ENSMUSG00000030513.14, intron 1 of 19) protein_coding-intron (ENSMUSG00000030513.14, intron 1 of 21) -36817 ENSMUSG00000093405.1 ENSMUSG00000093405 ENSMUST00000176744 Gm20684 bidirectional_promoter_lncRNA Interval_133020 chr5 149334032 149334460 + 0 NA Intergenic Intergenic -34230 ENSMUSG00000107314.1 ENSMUSG00000107314 ENSMUST00000201641 Gm20488 processed_transcript Interval_156658 chr8 56550580 56552111 + 0 NA promoter-TSS (ENSMUSG00000038215.15) protein_coding-promoter-TSS (ENSMUSG00000038215.15) -9571 ENSMUSG00000110318.1 ENSMUSG00000110318 ENSMUST00000209582 Gm2767 processed_pseudogene Interval_10058 chr1 165480105 165480336 + 0 NA intron (ENSMUSG00000026568.6, intron 2 of 2) protein_coding-intron (ENSMUSG00000026568.6, intron 4 of 4) 12720 ENSMUSG00000103763.1 ENSMUSG00000103763 ENSMUST00000195380 Gm37860 TEC Interval_136291 chr6 52597639 52598856 + 0 NA intron (ENSMUSG00000029776.11, intron 3 of 5) protein_coding-intron (ENSMUSG00000029776.11, intron 4 of 7) 4998 ENSMUSG00000107813.1 ENSMUSG00000107813 ENSMUST00000203918 Gm44434 TEC Interval_148846 chr7 89247335 89247555 + 0 NA intron (ENSMUSG00000039428.11, intron 2 of 5) protein_coding-intron (ENSMUSG00000039428.11, intron 4 of 14) -30348 ENSMUSG00000109576.1 ENSMUSG00000109576 ENSMUST00000208963 Gm44704 TEC Interval_161365 chr8 119967904 119968236 + 0 NA intron (ENSMUSG00000092329.1, intron 1 of 15) protein_coding-intron (ENSMUSG00000092329.1, intron 1 of 15) 21670 ENSMUSG00000031826.20 ENSMUSG00000031826 ENSMUST00000139648 Usp10 protein_coding Interval_81214 chr18 56528961 56529283 + 0 NA intron (ENSMUSG00000053644.13, intron 16 of 17) protein_coding-intron (ENSMUSG00000053644.13, intron 16 of 17) -9017 ENSMUSG00000099196.1 ENSMUSG00000099196 ENSMUST00000183892 Mir1258 miRNA Interval_23392 chr11 22172838 22173109 + 0 NA promoter-TSS (ENSMUSG00000042302.14) protein_coding-promoter-TSS (ENSMUSG00000042302.14) 113822 ENSMUSG00000042302.14 ENSMUSG00000042302 ENSMUST00000137594 Ehbp1 protein_coding Interval_96045 chr2 119407400 119407773 + 0 NA intron (ENSMUSG00000034154.15, intron 26 of 27) protein_coding-intron (ENSMUSG00000034154.15, intron 26 of 35) 32094 ENSMUSG00000034154.15 ENSMUSG00000034154 ENSMUST00000138707 Ino80 protein_coding Interval_84319 chr19 10059677 10060436 + 0 NA TTS (ENSMUSG00000024664.5) protein_coding-TTS (ENSMUSG00000024664.5) 11131 ENSMUSG00000024665.8 ENSMUSG00000024665 ENSMUST00000235937 Fads2 protein_coding Interval_60368 chr15 73201648 73202871 + 0 NA Intergenic Intergenic -24412 ENSMUSG00000036698.11 ENSMUSG00000036698 ENSMUST00000230464 Ago2 protein_coding Interval_91914 chr2 51323211 51323472 + 0 NA Intergenic Intergenic 42158 ENSMUSG00000086523.1 ENSMUSG00000086523 ENSMUST00000142804 Gm13499 lincRNA Interval_166996 chr9 64385562 64387377 + 0 NA intron (ENSMUSG00000036466.17, intron 1 of 24) protein_coding-intron (ENSMUSG00000036466.17, intron 1 of 24) 843 ENSMUSG00000036466.17 ENSMUSG00000036466 ENSMUST00000153934 Megf11 protein_coding Interval_170840 chr9 111080818 111081340 + 0 NA Intergenic Intergenic 5685 ENSMUSG00000088296.1 ENSMUSG00000088296 ENSMUST00000157671 Gm26409 snRNA Interval_55850 chr14 101482295 101483001 + 0 NA intron (ENSMUSG00000033083.16, intron 8 of 20) protein_coding-intron (ENSMUSG00000033083.16, intron 8 of 13) 90366 ENSMUSG00000115319.1 ENSMUSG00000115319 ENSMUST00000228293 Gm34417 processed_pseudogene Interval_154169 chr8 13191693 13192001 + 0 NA intron (ENSMUSG00000038515.10, intron 2 of 6) protein_coding-intron (ENSMUSG00000038515.10, intron 3 of 8) -2749 ENSMUSG00000088054.1 ENSMUSG00000088054 ENSMUST00000157429 Mir1968 miRNA Interval_98218 chr2 150016493 150016872 + 0 NA Intergenic Intergenic 94894 ENSMUSG00000083055.1 ENSMUSG00000083055 ENSMUST00000119999 Gm14140 processed_pseudogene Interval_123651 chr5 34282989 34283334 + 0 NA intron (ENSMUSG00000037224.15, intron 1 of 3) protein_coding-intron (ENSMUSG00000037224.15, intron 1 of 12) -5439 ENSMUSG00000109572.1 ENSMUSG00000109572 ENSMUST00000207754 Cfap99 protein_coding Interval_31388 chr11 100375255 100377473 + 0 NA intron (ENSMUSG00000001552.14, intron 9 of 12) protein_coding-intron (ENSMUSG00000001552.14, intron 9 of 13) -14238 ENSMUSG00000091478.2 ENSMUSG00000091478 ENSMUST00000081241 Gm10039 processed_pseudogene Interval_5220 chr1 86524808 86528802 + 0 NA promoter-TSS (ENSMUSG00000026238.14) protein_coding-promoter-TSS (ENSMUSG00000026238.14) 68 ENSMUSG00000026238.14 ENSMUSG00000026238 ENSMUST00000188533 Ptma protein_coding Interval_75380 chr17 66256025 66256299 + 0 NA Intergenic Intergenic -19793 ENSMUSG00000117220.1 ENSMUSG00000117220 ENSMUST00000233452 Gm49932 lincRNA Interval_144163 chr7 19741281 19742731 + 0 NA intron (ENSMUSG00000062300.14, intron 1 of 1) protein_coding-intron (ENSMUSG00000062300.14, intron 1 of 8) 8477 ENSMUSG00000062300.14 ENSMUSG00000062300 ENSMUST00000207271 Nectin2 protein_coding Interval_162021 chr8 124490007 124490349 + 0 NA Intergenic Intergenic -30641 ENSMUSG00000031979.17 ENSMUSG00000031979 ENSMUST00000129977 Cog2 protein_coding Interval_12271 chr1 191305571 191306872 + 0 NA TTS (ENSMUSG00000037499.9) protein_coding-TTS (ENSMUSG00000037499.9) 11973 ENSMUSG00000037499.9 ENSMUSG00000037499 ENSMUST00000046770 Nenf protein_coding Interval_137093 chr6 67300357 67301463 + 0 NA intron (ENSMUSG00000018341.12, intron 6 of 9) protein_coding-intron (ENSMUSG00000018341.12, intron 12 of 15) 33905 ENSMUSG00000036371.6 ENSMUSG00000036371 ENSMUST00000204206 Serbp1 protein_coding Interval_104056 chr3 57760524 57761173 + 0 NA intron (ENSMUSG00000036503.13, intron 1 of 1) protein_coding-intron (ENSMUSG00000036503.13, intron 1 of 9) 5807 ENSMUSG00000106421.1 ENSMUSG00000106421 ENSMUST00000197131 Gm9645 processed_pseudogene Interval_17376 chr10 76198594 76198793 + 0 NA intron (ENSMUSG00000112625.1, intron 1 of 1) processed_pseudogene-intron (ENSMUSG00000112625.1, intron 1 of 1) 288 ENSMUSG00000112625.1 ENSMUSG00000112625 ENSMUST00000218019 Gm2628 processed_pseudogene Interval_145958 chr7 42659721 42661007 + 0 NA exon (ENSMUSG00000069727.5, exon 4 of 4) protein_coding-exon (ENSMUSG00000069727.5, exon 4 of 4) 32378 ENSMUSG00000069727.5 ENSMUSG00000069727 ENSMUST00000206356 Zfp975 protein_coding Interval_127493 chr5 104465478 104467776 + 0 NA intron (ENSMUSG00000034462.9, intron 1 of 8) protein_coding-intron (ENSMUSG00000034462.9, intron 1 of 14) -26144 ENSMUSG00000034462.9 ENSMUSG00000034462 ENSMUST00000133540 Pkd2 protein_coding Interval_10282 chr1 167932276 167932536 + 0 NA Intergenic Intergenic -71733 ENSMUSG00000093538.2 ENSMUSG00000093538 ENSMUST00000177351 Gm20711 antisense Interval_27180 chr11 63864135 63864408 + 0 NA Intergenic Intergenic -17453 ENSMUSG00000081455.1 ENSMUSG00000081455 ENSMUST00000118415 Hmgb1-ps3 processed_pseudogene Interval_64264 chr16 10022554 10023332 + 0 NA Intergenic Intergenic -22022 ENSMUSG00000098100.1 ENSMUSG00000098100 ENSMUST00000182616 Gm7572 processed_pseudogene Interval_125989 chr5 76613357 76613615 + 0 NA intron (ENSMUSG00000036403.15, intron 11 of 23) protein_coding-intron (ENSMUSG00000036403.15, intron 10 of 24) 24788 ENSMUSG00000036403.15 ENSMUSG00000036403 ENSMUST00000049060 Cep135 protein_coding Interval_86189 chr19 37663700 37664063 + 0 NA intron (ENSMUSG00000053799.8, intron 21 of 22) protein_coding-intron (ENSMUSG00000053799.8, intron 20 of 21) -21700 ENSMUSG00000062432.4 ENSMUSG00000062432 ENSMUST00000073391 Cyp26c1 protein_coding Interval_11500 chr1 182282101 182283471 + 0 NA promoter-TSS (ENSMUSG00000038633.5) protein_coding-promoter-TSS (ENSMUSG00000038633.5) -562 ENSMUSG00000038633.5 ENSMUSG00000038633 ENSMUST00000133052 Degs1 protein_coding Interval_14738 chr10 39517533 39518122 + 0 NA intron (ENSMUSG00000019843.14, intron 4 of 12) protein_coding-intron (ENSMUSG00000019843.14, intron 5 of 13) 40235 ENSMUSG00000087014.1 ENSMUSG00000087014 ENSMUST00000153722 Gm16364 antisense Interval_133609 chr6 7599908 7600466 + 0 NA Intergenic Intergenic -43719 ENSMUSG00000099182.1 ENSMUSG00000099182 ENSMUST00000184206 Gm8676 processed_pseudogene Interval_10694 chr1 173196535 173197083 + 0 NA promoter-TSS (ENSMUSG00000046643.2) protein_coding-promoter-TSS (ENSMUSG00000046643.2) -999 ENSMUSG00000046643.2 ENSMUSG00000046643 ENSMUST00000057548 Olfr218 protein_coding Interval_68398 chr16 75749807 75750764 + 0 NA intron (ENSMUSG00000032932.15, intron 8 of 9) protein_coding-intron (ENSMUSG00000032932.15, intron 8 of 9) -3817 ENSMUSG00000080750.2 ENSMUSG00000080750 ENSMUST00000118757 Gm15553 processed_pseudogene Interval_131749 chr5 139647338 139648388 + 0 NA Intergenic Intergenic -53784 ENSMUSG00000104637.1 ENSMUSG00000104637 ENSMUST00000198319 Gm42424 processed_pseudogene Interval_143551 chr7 12662043 12662445 + 0 NA intron (ENSMUSG00000091045.9, intron 3 of 4) protein_coding-intron (ENSMUSG00000091045.9, intron 4 of 4) -21925 ENSMUSG00000096593.2 ENSMUSG00000096593 ENSMUST00000086210 Vmn2r54 protein_coding Interval_146464 chr7 46098864 46099197 + 0 NA promoter-TSS (ENSMUSG00000096146.2) protein_coding-promoter-TSS (ENSMUSG00000096146.2) 1207 ENSMUSG00000096146.2 ENSMUSG00000096146 ENSMUST00000209291 Kcnj11 protein_coding Interval_66908 chr16 38458608 38459364 + 0 NA promoter-TSS (ENSMUSG00000075122.5) protein_coding-promoter-TSS (ENSMUSG00000075122.5) -132 ENSMUSG00000075122.5 ENSMUSG00000075122 ENSMUST00000232409 Cd80 protein_coding Interval_119335 chr4 136928822 136929352 + 0 NA TTS (ENSMUSG00000028661.8) protein_coding-TTS (ENSMUSG00000028661.8) 27729 ENSMUSG00000028661.8 ENSMUSG00000028661 ENSMUST00000030420 Epha8 protein_coding Interval_161352 chr8 119909864 119911478 + 0 NA promoter-TSS (ENSMUSG00000031826.20) protein_coding-promoter-TSS (ENSMUSG00000031826.20) -170 ENSMUSG00000092329.1 ENSMUSG00000092329 ENSMUST00000127664 Galnt2l protein_coding Interval_58390 chr15 34082216 34083888 + 0 NA promoter-TSS (ENSMUSG00000022255.16) protein_coding-promoter-TSS (ENSMUSG00000022255.16) 29934 ENSMUSG00000115440.1 ENSMUSG00000115440 ENSMUST00000227515 Gm49091 processed_pseudogene Interval_153729 chr8 5448177 5448545 + 0 NA Intergenic Intergenic -7371 ENSMUSG00000109313.1 ENSMUSG00000109313 ENSMUST00000208141 Gm44693 lincRNA Interval_159118 chr8 90822608 90822829 + 0 NA Intergenic Intergenic -5325 ENSMUSG00000110332.1 ENSMUSG00000110332 ENSMUST00000209208 Gm19935 protein_coding Interval_5888 chr1 92978240 92979735 + 0 NA promoter-TSS (ENSMUSG00000026271.15) protein_coding-promoter-TSS (ENSMUSG00000026271.15) 22823 ENSMUSG00000026271.15 ENSMUSG00000026271 ENSMUST00000169198 Gpr35 protein_coding Interval_164389 chr9 36694724 36695028 + 0 NA exon (ENSMUSG00000032110.4, exon 2 of 2) protein_coding-exon (ENSMUSG00000032110.4, exon 2 of 2) 1622 ENSMUSG00000032110.4 ENSMUSG00000032110 ENSMUST00000184160 Acrv1 protein_coding Interval_108778 chr3 131218467 131220134 + 0 NA intron (ENSMUSG00000027985.14, intron 11 of 11) protein_coding-intron (ENSMUSG00000027985.14, intron 11 of 11) 52724 ENSMUSG00000027984.8 ENSMUSG00000027984 ENSMUST00000152427 Hadh protein_coding Interval_62997 chr15 98567136 98569013 + 0 NA promoter-TSS (ENSMUSG00000011960.12) protein_coding-promoter-TSS (ENSMUSG00000011960.12) 750 ENSMUSG00000091050.1 ENSMUSG00000091050 ENSMUST00000163781 9330020H09Rik antisense Interval_8819 chr1 151367039 151367583 + 0 NA TTS (ENSMUSG00000052748.14) protein_coding-TTS (ENSMUSG00000052748.14) 6064 ENSMUSG00000023150.14 ENSMUSG00000023150 ENSMUST00000190872 Ivns1abp protein_coding Interval_111030 chr4 11313231 11313426 + 0 NA intron (ENSMUSG00000045205.16, intron 3 of 6) protein_coding-intron (ENSMUSG00000045205.16, intron 2 of 18) 8772 ENSMUSG00000045205.16 ENSMUSG00000045205 ENSMUST00000148524 Dpy19l4 protein_coding Interval_167407 chr9 68773567 68774005 + 0 NA intron (ENSMUSG00000032238.17, intron 1 of 5) protein_coding-intron (ENSMUSG00000032238.17, intron 1 of 10) 119895 ENSMUSG00000032238.17 ENSMUSG00000032238 ENSMUST00000113624 Rora protein_coding Interval_57206 chr15 7712576 7713574 + 0 NA Intergenic Intergenic -42735 ENSMUSG00000103142.1 ENSMUSG00000103142 ENSMUST00000194645 Gm37743 TEC Interval_75444 chr17 66570861 66571108 + 0 NA intron (ENSMUSG00000024105.3, intron 2 of 3) protein_coding-intron (ENSMUSG00000024105.3, intron 2 of 3) 23637 ENSMUSG00000024105.3 ENSMUSG00000024105 ENSMUST00000024914 Themis3 protein_coding Interval_73968 chr17 45748159 45748925 + 0 NA intron (ENSMUSG00000097727.8, intron 1 of 4) lincRNA-intron (ENSMUSG00000097727.8, intron 1 of 4) -14698 ENSMUSG00000094690.2 ENSMUSG00000094690 ENSMUST00000178179 1600014C23Rik protein_coding Interval_88620 chr2 6904949 6905169 + 0 NA intron (ENSMUSG00000002107.18, intron 2 of 13) protein_coding-intron (ENSMUSG00000002107.18, intron 3 of 15) 20789 ENSMUSG00000087079.1 ENSMUSG00000087079 ENSMUST00000142774 Gm13389 antisense Interval_45109 chr13 52282335 52282719 + 0 NA Intergenic Intergenic 102116 ENSMUSG00000113399.1 ENSMUSG00000113399 ENSMUST00000222876 Gm48199 lincRNA Interval_139699 chr6 107280316 107280714 + 0 NA Intergenic Intergenic -3777 ENSMUSG00000107714.1 ENSMUSG00000107714 ENSMUST00000203245 Gm34933 lincRNA Interval_38478 chr12 79322211 79323280 + 0 NA intron (ENSMUSG00000059060.15, intron 5 of 10) protein_coding-intron (ENSMUSG00000059060.15, intron 5 of 7) -4608 ENSMUSG00000059060.15 ENSMUSG00000059060 ENSMUST00000221257 Rad51b protein_coding Interval_137008 chr6 66103336 66103614 + 0 NA Intergenic Intergenic 107838 ENSMUSG00000108100.1 ENSMUSG00000108100 ENSMUST00000203735 Gm5876 processed_pseudogene Interval_126471 chr5 88782111 88782596 + 0 NA exon (ENSMUSG00000029366.10, exon 7 of 7) protein_coding-exon (ENSMUSG00000029366.10, exon 7 of 7) -11543 ENSMUSG00000105640.1 ENSMUSG00000105640 ENSMUST00000197195 Gm42912 lincRNA Interval_148150 chr7 79497771 79498090 + 0 NA Intergenic Intergenic -2108 ENSMUSG00000097023.8 ENSMUSG00000097023 ENSMUST00000182125 Mir9-3hg lincRNA Interval_24338 chr11 32515611 32517115 + 0 NA exon (ENSMUSG00000044949.4, exon 3 of 3) protein_coding-exon (ENSMUSG00000044949.4, exon 3 of 3) 15718 ENSMUSG00000044056.3 ENSMUSG00000044056 ENSMUST00000109377 Efcab9 protein_coding Interval_9823 chr1 162691579 162691819 + 0 NA intron (ENSMUSG00000040225.15, intron 22 of 34) protein_coding-intron (ENSMUSG00000040225.15, intron 22 of 34) -17479 ENSMUSG00000098259.1 ENSMUSG00000098259 ENSMUST00000184547 Gm27616 miRNA Interval_105987 chr3 90472236 90472642 + 0 NA Intergenic Intergenic -1480 ENSMUSG00000105746.1 ENSMUSG00000105746 ENSMUST00000196464 Gm43595 unprocessed_pseudogene Interval_13411 chr10 17947049 17948651 + 0 NA exon (ENSMUSG00000039879.9, exon 1 of 4) protein_coding-exon (ENSMUSG00000039879.9, exon 1 of 4) -32648 ENSMUSG00000039879.9 ENSMUSG00000039879 ENSMUST00000218268 Heca protein_coding Interval_48805 chr13 103474965 103475286 + 0 NA Intergenic Intergenic -54043 ENSMUSG00000087860.1 ENSMUSG00000087860 ENSMUST00000157235 Gm24441 misc_RNA Interval_72096 chr17 28013016 28013900 + 0 NA intron (ENSMUSG00000024219.16, intron 11 of 23) protein_coding-intron (ENSMUSG00000024219.16, intron 12 of 24) -11096 ENSMUSG00000117263.1 ENSMUSG00000117263 ENSMUST00000233367 Gm35290 antisense Interval_123560 chr5 33492776 33493033 + 0 NA Intergenic Intergenic -55440 ENSMUSG00000107248.1 ENSMUSG00000107248 ENSMUST00000200726 Gm43851 lincRNA Interval_157815 chr8 73904299 73904582 + 0 NA Intergenic Intergenic 32747 ENSMUSG00000110609.1 ENSMUSG00000110609 ENSMUST00000212607 Gm7948 processed_pseudogene Interval_170029 chr9 103776696 103777025 + 0 NA Intergenic Intergenic -15031 ENSMUSG00000042757.16 ENSMUSG00000042757 ENSMUST00000186455 Tmem108 protein_coding Interval_165099 chr9 44562502 44563827 + 0 NA Intergenic Intergenic -16463 ENSMUSG00000111378.1 ENSMUSG00000111378 ENSMUST00000215946 Gm47230 lincRNA Interval_158311 chr8 81017573 81018143 + 0 NA intron (ENSMUSG00000037982.16, intron 1 of 2) antisense-intron (ENSMUSG00000037982.16, intron 1 of 1) 2715 ENSMUSG00000037982.16 ENSMUSG00000037982 ENSMUST00000209272 Gm9725 antisense Interval_125128 chr5 64737853 64740304 + 0 NA intron (ENSMUSG00000097640.7, intron 1 of 4) processed_transcript-intron (ENSMUSG00000097640.7, intron 1 of 4) -40557 ENSMUSG00000097668.2 ENSMUSG00000097668 ENSMUST00000180650 Gm26761 lincRNA Interval_28656 chr11 77591743 77592053 + 0 NA intron (ENSMUSG00000017291.13, intron 1 of 19) protein_coding-intron (ENSMUSG00000017291.13, intron 1 of 19) 15917 ENSMUSG00000017291.13 ENSMUSG00000017291 ENSMUST00000058496 Taok1 protein_coding Interval_92801 chr2 65532358 65533078 + 0 NA intron (ENSMUSG00000057182.15, intron 2 of 15) protein_coding-intron (ENSMUSG00000057182.15, intron 2 of 26) -8060 ENSMUSG00000057182.15 ENSMUSG00000057182 ENSMUST00000126837 Scn3a protein_coding Interval_33321 chr11 115911479 115912508 + 0 NA promoter-TSS (ENSMUSG00000075420.6) protein_coding-promoter-TSS (ENSMUSG00000075420.6) -24 ENSMUSG00000075420.6 ENSMUSG00000075420 ENSMUST00000132961 Smim6 protein_coding Interval_46825 chr13 71722788 71723455 + 0 NA intron (ENSMUSG00000114038.1, intron 6 of 7) processed_transcript-intron (ENSMUSG00000114038.1, intron 6 of 7) 62774 ENSMUSG00000114038.1 ENSMUSG00000114038 ENSMUST00000223183 Gm40999 processed_transcript Interval_22022 chr11 5828623 5829657 + 0 NA TTS (ENSMUSG00000020474.11) protein_coding-TTS (ENSMUSG00000020474.11) 7345 ENSMUSG00000020474.11 ENSMUSG00000020474 ENSMUST00000153987 Polm protein_coding Interval_118361 chr4 130892102 130892644 + 0 NA Intergenic Intergenic -20985 ENSMUSG00000028581.17 ENSMUSG00000028581 ENSMUST00000125332 Laptm5 protein_coding Interval_8090 chr1 135675319 135677668 + 0 NA intron (ENSMUSG00000009418.16, intron 1 of 30) protein_coding-intron (ENSMUSG00000009418.16, intron 1 of 1) -43568 ENSMUSG00000026421.14 ENSMUSG00000026421 ENSMUST00000027677 Csrp1 protein_coding Interval_66760 chr16 37110765 37111117 + 0 NA Intergenic Intergenic 99155 ENSMUSG00000034206.15 ENSMUSG00000034206 ENSMUST00000182717 Polq protein_coding Interval_168909 chr9 88522520 88523563 + 0 NA promoter-TSS (ENSMUSG00000097195.10) processed_transcript-promoter-TSS (ENSMUSG00000097195.10) -153 ENSMUSG00000097195.10 ENSMUSG00000097195 ENSMUST00000239193 Snhg5 processed_transcript Interval_15025 chr10 42017623 42018864 + 0 NA promoter-TSS (ENSMUSG00000111103.1) bidirectional_promoter_lncRNA-promoter-TSS (ENSMUSG00000111103.1) 27 ENSMUSG00000111103.1 ENSMUSG00000111103 ENSMUST00000214172 1700016J18Rik bidirectional_promoter_lncRNA Interval_20445 chr10 117662750 117664335 + 0 NA intron (ENSMUSG00000020183.11, intron 3 of 3) protein_coding-intron (ENSMUSG00000020183.11, intron 3 of 8) -1154 ENSMUSG00000096357.1 ENSMUSG00000096357 ENSMUST00000178844 Gm25709 snRNA Interval_84620 chr19 14484045 14484236 + 0 NA intron (ENSMUSG00000024642.17, intron 8 of 19) protein_coding-intron (ENSMUSG00000024642.17, intron 8 of 19) 111399 ENSMUSG00000024642.17 ENSMUSG00000024642 ENSMUST00000235975 Tle4 protein_coding Interval_19649 chr10 106994527 106994778 + 0 NA intron (ENSMUSG00000035948.13, intron 8 of 15) protein_coding-intron (ENSMUSG00000035948.13, intron 8 of 10) 45355 ENSMUSG00000112443.1 ENSMUSG00000112443 ENSMUST00000217746 Gm19007 processed_pseudogene Interval_57131 chr15 6787007 6787396 + 0 NA exon (ENSMUSG00000050310.9, exon 31 of 38) protein_coding-exon (ENSMUSG00000050310.9, exon 31 of 38) 78822 ENSMUSG00000050310.9 ENSMUSG00000050310 ENSMUST00000061656 Rictor protein_coding Interval_142979 chr6 147955464 147955673 + 0 NA Intergenic Intergenic 91771 ENSMUSG00000086777.3 ENSMUSG00000086777 ENSMUST00000149815 Far2os2 antisense Interval_67133 chr16 43748541 43748833 + 0 NA Intergenic Intergenic -5339 ENSMUSG00000022705.5 ENSMUSG00000022705 ENSMUST00000023390 Drd3 protein_coding Interval_70788 chr17 14524320 14524987 + 0 NA Intergenic Intergenic 75082 ENSMUSG00000116801.1 ENSMUSG00000116801 ENSMUST00000232609 Gm38551 lincRNA Interval_117023 chr4 119057003 119057327 + 0 NA intron (ENSMUSG00000066060.5, intron 1 of 1) lincRNA-intron (ENSMUSG00000066060.5, intron 1 of 1) 11946 ENSMUSG00000066060.5 ENSMUSG00000066060 ENSMUST00000128998 Gm12866 lincRNA Interval_72333 chr17 29258380 29261291 + 0 NA intron (ENSMUSG00000024007.15, intron 2 of 3) protein_coding-intron (ENSMUSG00000024007.15, intron 2 of 3) -4164 ENSMUSG00000117614.1 ENSMUSG00000117614 ENSMUST00000234345 Gm50068 antisense Interval_38932 chr12 83900420 83901018 + 0 NA intron (ENSMUSG00000021224.15, intron 1 of 8) protein_coding-intron (ENSMUSG00000021224.15, intron 1 of 12) 21014 ENSMUSG00000021224.15 ENSMUSG00000021224 ENSMUST00000222439 Numb protein_coding Interval_19234 chr10 95665366 95665857 + 0 NA Intergenic Intergenic 7778 ENSMUSG00000074780.2 ENSMUSG00000074780 ENSMUST00000099328 Anapc15-ps protein_coding Interval_30701 chr11 95989824 95991761 + 0 NA intron (ENSMUSG00000013415.9, intron 2 of 14) protein_coding-intron (ENSMUSG00000013415.9, intron 2 of 14) -8198 ENSMUSG00000013415.9 ENSMUSG00000013415 ENSMUST00000141515 Igf2bp1 protein_coding Interval_105009 chr3 79700093 79700476 + 0 NA intron (ENSMUSG00000034009.14, intron 2 of 15) protein_coding-intron (ENSMUSG00000034009.14, intron 2 of 17) -23408 ENSMUSG00000098204.1 ENSMUSG00000098204 ENSMUST00000182345 Gm26984 sense_intronic Interval_138249 chr6 86593672 86596056 + 0 NA Intergenic Intergenic 3434 ENSMUSG00000108059.1 ENSMUSG00000108059 ENSMUST00000204543 Gm44369 TEC Interval_32731 chr11 110114692 110114893 + 0 NA intron (ENSMUSG00000041797.7, intron 29 of 38) protein_coding-intron (ENSMUSG00000041797.7, intron 29 of 38) -49419 ENSMUSG00000041828.15 ENSMUSG00000041828 ENSMUST00000106662 Abca8a protein_coding Interval_37058 chr12 57187223 57187673 + 0 NA intron (ENSMUSG00000035472.14, intron 1 of 9) protein_coding-intron (ENSMUSG00000035472.14, intron 1 of 9) -26805 ENSMUSG00000035472.14 ENSMUSG00000035472 ENSMUST00000160892 Slc25a21 protein_coding Interval_135038 chr6 34892309 34892960 + 0 NA intron (ENSMUSG00000058486.11, intron 7 of 13) protein_coding-intron (ENSMUSG00000058486.11, intron 7 of 14) -15654 ENSMUSG00000046806.13 ENSMUSG00000046806 ENSMUST00000140458 Cyren protein_coding Interval_23422 chr11 22525743 22526500 + 0 NA Intergenic Intergenic 14033 ENSMUSG00000049904.7 ENSMUSG00000049904 ENSMUST00000059319 Tmem17 protein_coding Interval_14943 chr10 41308947 41309642 + 0 NA intron (ENSMUSG00000091415.5, intron 1 of 39) protein_coding-intron (ENSMUSG00000091415.5, intron 1 of 39) 5314 ENSMUSG00000091415.5 ENSMUSG00000091415 ENSMUST00000173494 Ak9 protein_coding Interval_80882 chr18 49859660 49861756 + 0 NA intron (ENSMUSG00000037416.13, intron 9 of 42) protein_coding-intron (ENSMUSG00000037416.13, intron 9 of 42) -42750 ENSMUSG00000100134.1 ENSMUSG00000100134 ENSMUST00000186872 1700065O20Rik lincRNA Interval_153293 chr7 143388784 143389590 + 0 NA intron (ENSMUSG00000009545.14, intron 15 of 15) protein_coding-intron (ENSMUSG00000009545.14, intron 15 of 15) -24562 ENSMUSG00000101360.2 ENSMUSG00000101360 ENSMUST00000188294 4933417O13Rik antisense Interval_127232 chr5 101705212 101705646 + 0 NA exon (ENSMUSG00000106164.1, exon 2 of 2) lincRNA-exon (ENSMUSG00000106164.1, exon 2 of 2) -1366 ENSMUSG00000105097.1 ENSMUSG00000105097 ENSMUST00000196076 Gm42133 lincRNA Interval_161214 chr8 118737347 118737814 + 0 NA intron (ENSMUSG00000031841.19, intron 3 of 7) protein_coding-intron (ENSMUSG00000031841.19, intron 3 of 13) 10680 ENSMUSG00000087707.1 ENSMUSG00000087707 ENSMUST00000157082 Gm22999 snoRNA Interval_65236 chr16 20746038 20747067 + 0 NA Intergenic Intergenic 1244 ENSMUSG00000065372.1 ENSMUSG00000065372 ENSMUST00000083438 Gm22741 snRNA Interval_113086 chr4 47797570 47798012 + 0 NA Intergenic Intergenic -122964 ENSMUSG00000089349.1 ENSMUSG00000089349 ENSMUST00000158724 Gm22670 snoRNA Interval_70582 chr17 12134839 12135224 + 0 NA intron (ENSMUSG00000023827.8, intron 1 of 3) protein_coding-intron (ENSMUSG00000023827.8, intron 1 of 8) 15702 ENSMUSG00000023827.8 ENSMUSG00000023827 ENSMUST00000167905 Agpat4 protein_coding Interval_683 chr1 9859469 9859851 + 0 NA intron (ENSMUSG00000025915.14, intron 1 of 16) protein_coding-intron (ENSMUSG00000025915.14, intron 1 of 16) -23807 ENSMUSG00000025915.14 ENSMUSG00000025915 ENSMUST00000188486 Sgk3 protein_coding Interval_69394 chr16 92658208 92658986 + 0 NA intron (ENSMUSG00000022952.17, intron 3 of 5) protein_coding-intron (ENSMUSG00000022952.17, intron 5 of 7) 45783 ENSMUSG00000097139.3 ENSMUSG00000097139 ENSMUST00000180989 Gm26626 antisense Interval_102335 chr3 21984155 21984993 + 0 NA Intergenic Intergenic 13894 ENSMUSG00000106321.1 ENSMUSG00000106321 ENSMUST00000196313 Gm43674 lincRNA Interval_89704 chr2 24791967 24792278 + 0 NA exon (ENSMUSG00000036893.17, exon 26 of 26) protein_coding-exon (ENSMUSG00000036893.17, exon 26 of 26) 71801 ENSMUSG00000036893.17 ENSMUSG00000036893 ENSMUST00000150379 Ehmt1 protein_coding Interval_166465 chr9 59723175 59724188 + 0 NA Intergenic Intergenic 9565 ENSMUSG00000074259.10 ENSMUSG00000074259 ENSMUST00000143224 Gramd2 protein_coding Interval_119604 chr4 138682665 138683687 + 0 NA Intergenic Intergenic 42045 ENSMUSG00000043621.13 ENSMUSG00000043621 ENSMUST00000135156 Ubxn10 protein_coding Interval_146690 chr7 49462175 49463127 + 0 NA intron (ENSMUSG00000052512.17, intron 9 of 38) protein_coding-intron (ENSMUSG00000052512.17, intron 9 of 37) -7061 ENSMUSG00000102148.1 ENSMUSG00000102148 ENSMUST00000193746 Gm38059 TEC Interval_115352 chr4 97777214 97779130 + 0 NA promoter-TSS (ENSMUSG00000048747.14) protein_coding-promoter-TSS (ENSMUSG00000048747.14) 5438 ENSMUSG00000028565.18 ENSMUSG00000028565 ENSMUST00000133011 Nfia protein_coding Interval_99521 chr2 162942991 162944188 + 0 NA promoter-TSS (ENSMUSG00000035576.13) protein_coding-promoter-TSS (ENSMUSG00000035576.13) 114 ENSMUSG00000035576.13 ENSMUSG00000035576 ENSMUST00000125296 L3mbtl1 protein_coding Interval_148176 chr7 79648700 79649222 + 0 NA Intergenic Intergenic -21960 ENSMUSG00000046591.10 ENSMUSG00000046591 ENSMUST00000206677 Ticrr protein_coding Interval_30568 chr11 95154904 95155810 + 0 NA exon (ENSMUSG00000086552.3, exon 2 of 3) antisense-exon (ENSMUSG00000086552.3, exon 2 of 3) -9556 ENSMUSG00000020871.8 ENSMUSG00000020871 ENSMUST00000146838 Dlx4 protein_coding Interval_7114 chr1 126149294 126151311 + 0 NA intron (ENSMUSG00000049690.15, intron 5 of 10) protein_coding-intron (ENSMUSG00000049690.15, intron 4 of 12) -78841 ENSMUSG00000102723.1 ENSMUSG00000102723 ENSMUST00000194647 Gm37936 TEC Interval_24697 chr11 35962607 35964300 + 0 NA intron (ENSMUSG00000018849.6, intron 1 of 22) protein_coding-intron (ENSMUSG00000018849.6, intron 1 of 22) -32601 ENSMUSG00000081571.1 ENSMUSG00000081571 ENSMUST00000117261 Gm12125 processed_pseudogene Interval_86819 chr19 44086217 44086799 + 0 NA intron (ENSMUSG00000025199.16, intron 13 of 15) protein_coding-intron (ENSMUSG00000025199.16, intron 13 of 20) -10604 ENSMUSG00000025199.16 ENSMUSG00000025199 ENSMUST00000146861 Chuk protein_coding Interval_15618 chr10 52342051 52342257 + 0 NA exon (ENSMUSG00000112550.1, exon 1 of 1) processed_pseudogene-exon (ENSMUSG00000112550.1, exon 1 of 1) 1503 ENSMUSG00000112550.1 ENSMUSG00000112550 ENSMUST00000218299 Gm6627 processed_pseudogene Interval_136849 chr6 61347270 61347479 + 0 NA intron (ENSMUSG00000039578.17, intron 1 of 3) protein_coding-intron (ENSMUSG00000039578.17, intron 2 of 9) -53233 ENSMUSG00000107757.1 ENSMUSG00000107757 ENSMUST00000204456 Gm43898 processed_pseudogene Interval_38109 chr12 75693016 75693798 + 0 NA Intergenic Intergenic -23880 ENSMUSG00000045690.8 ENSMUSG00000045690 ENSMUST00000187307 Wdr89 protein_coding Interval_126458 chr5 88675147 88676397 + 0 NA promoter-TSS (ENSMUSG00000044221.14) protein_coding-promoter-TSS (ENSMUSG00000044221.14) -102 ENSMUSG00000044221.14 ENSMUSG00000044221 ENSMUST00000137725 Grsf1 protein_coding Interval_6060 chr1 95396996 95397545 + 0 NA Intergenic Intergenic 68589 ENSMUSG00000103973.1 ENSMUSG00000103973 ENSMUST00000193380 BC055308 TEC Interval_20253 chr10 116457489 116458056 + 0 NA intron (ENSMUSG00000054934.10, intron 1 of 2) protein_coding-intron (ENSMUSG00000054934.10, intron 1 of 2) -15391 ENSMUSG00000085837.8 ENSMUSG00000085837 ENSMUST00000123348 Kcnmb4os2 antisense Interval_45670 chr13 56734858 56735813 + 0 NA intron (ENSMUSG00000021540.16, intron 1 of 2) protein_coding-intron (ENSMUSG00000021540.16, intron 5 of 6) 18492 ENSMUSG00000110086.1 ENSMUSG00000110086 ENSMUST00000210744 Gm45623 protein_coding Interval_29523 chr11 84664109 84664344 + 0 NA Intergenic Intergenic 56206 ENSMUSG00000085044.1 ENSMUSG00000085044 ENSMUST00000150735 1700109G15Rik lincRNA Interval_5212 chr1 86470881 86473692 + 0 NA Intergenic Intergenic -1373 ENSMUSG00000101328.1 ENSMUSG00000101328 ENSMUST00000163337 Rpl30-ps6 processed_pseudogene Interval_153319 chr7 143592233 143593136 + 0 NA intron (ENSMUSG00000010755.17, intron 1 of 22) protein_coding-intron (ENSMUSG00000010755.17, intron 1 of 22) -3755 ENSMUSG00000082561.1 ENSMUSG00000082561 ENSMUST00000121587 Gm15580 processed_pseudogene Interval_24677 chr11 35834081 35835065 + 0 NA promoter-TSS (ENSMUSG00000018848.4) protein_coding-promoter-TSS (ENSMUSG00000018848.4) -9440 ENSMUSG00000018848.4 ENSMUSG00000018848 ENSMUST00000137815 Rars protein_coding Interval_69096 chr16 90629007 90629862 + 0 NA Intergenic Intergenic 26938 ENSMUSG00000064471.1 ENSMUSG00000064471 ENSMUST00000082537 Gm23406 snoRNA Interval_160154 chr8 106776732 106778062 + 0 NA intron (ENSMUSG00000041949.6, intron 14 of 17) protein_coding-intron (ENSMUSG00000041949.6, intron 14 of 17) -93439 ENSMUSG00000031910.14 ENSMUSG00000031910 ENSMUST00000175987 Has3 protein_coding Interval_17306 chr10 75743757 75744482 + 0 NA intron (ENSMUSG00000020196.10, intron 10 of 36) protein_coding-intron (ENSMUSG00000020196.10, intron 10 of 36) -11499 ENSMUSG00000020196.10 ENSMUSG00000020196 ENSMUST00000218480 Cabin1 protein_coding Interval_91006 chr2 34139013 34139229 + 0 NA Intergenic Intergenic -27677 ENSMUSG00000103413.1 ENSMUSG00000103413 ENSMUST00000147871 Gm38389 lincRNA Interval_54200 chr14 66189176 66189754 + 0 NA intron (ENSMUSG00000059456.13, intron 3 of 29) protein_coding-intron (ENSMUSG00000059456.13, intron 4 of 30) 24087 ENSMUSG00000059456.13 ENSMUSG00000059456 ENSMUST00000127083 Ptk2b protein_coding Interval_150760 chr7 114156751 114156965 + 0 NA Intergenic Intergenic -39094 ENSMUSG00000055723.6 ENSMUSG00000055723 ENSMUST00000210075 Rras2 protein_coding Interval_113138 chr4 48573377 48574212 + 0 NA Intergenic Intergenic 33248 ENSMUSG00000039693.11 ENSMUSG00000039693 ENSMUST00000132360 Msantd3 protein_coding Interval_123372 chr5 31963359 31964331 + 0 NA intron (ENSMUSG00000052139.18, intron 5 of 6) protein_coding-intron (ENSMUSG00000052139.18, intron 9 of 13) 37148 ENSMUSG00000107140.1 ENSMUSG00000107140 ENSMUST00000202862 Gm43811 TEC Interval_51188 chr14 24578874 24580024 + 0 NA Intergenic Intergenic 38018 ENSMUSG00000048628.5 ENSMUSG00000048628 ENSMUST00000062438 4930542C16Rik lincRNA Interval_119481 chr4 137857274 137857688 + 0 NA Intergenic Intergenic 26456 ENSMUSG00000085823.7 ENSMUSG00000085823 ENSMUST00000156022 Gm13012 antisense Interval_143818 chr7 16475468 16477057 + 0 NA promoter-TSS (ENSMUSG00000001988.9) protein_coding-promoter-TSS (ENSMUSG00000001988.9) 1466 ENSMUSG00000001988.9 ENSMUSG00000001988 ENSMUST00000211695 Npas1 protein_coding Interval_74282 chr17 47873174 47874082 + 0 NA intron (ENSMUSG00000023991.16, intron 13 of 16) protein_coding-intron (ENSMUSG00000023991.16, intron 13 of 16) 5325 ENSMUSG00000023991.16 ENSMUSG00000023991 ENSMUST00000153752 Foxp4 protein_coding Interval_103772 chr3 52605082 52605679 + 0 NA Intergenic Intergenic -7455 ENSMUSG00000070490.4 ENSMUSG00000070490 ENSMUST00000076317 Gm10293 processed_pseudogene Interval_93332 chr2 72004927 72005313 + 0 NA intron (ENSMUSG00000049044.16, intron 1 of 5) protein_coding-intron (ENSMUSG00000049044.16, intron 1 of 30) -5328 ENSMUSG00000088297.1 ENSMUSG00000088297 ENSMUST00000157672 Gm26408 snoRNA Interval_2158 chr1 36778499 36779910 + 0 NA exon (ENSMUSG00000026117.10, exon 8 of 13) protein_coding-exon (ENSMUSG00000026117.10, exon 8 of 13) 220 ENSMUSG00000026117.10 ENSMUSG00000026117 ENSMUST00000190128 Zap70 protein_coding Interval_144316 chr7 24453662 24454782 + 0 NA Intergenic Intergenic -1925 ENSMUSG00000062028.8 ENSMUSG00000062028 ENSMUST00000205629 Irgc1 protein_coding Interval_7759 chr1 133479703 133480510 + 0 NA Intergenic Intergenic -49373 ENSMUSG00000101004.1 ENSMUSG00000101004 ENSMUST00000188004 Gm8596 processed_pseudogene Interval_9768 chr1 161975935 161977508 + 0 NA intron (ENSMUSG00000103393.1, intron 1 of 2) antisense-intron (ENSMUSG00000103393.1, intron 1 of 2) 2915 ENSMUSG00000086277.2 ENSMUSG00000086277 ENSMUST00000141397 4930558K02Rik protein_coding Interval_64631 chr16 13764461 13765770 + 0 NA Intergenic Intergenic 10549 ENSMUSG00000118559.2 ENSMUSG00000118559 ENSMUST00000239037 A930007A09Rik protein_coding Interval_90987 chr2 33954284 33954869 + 0 NA Intergenic Intergenic -12431 ENSMUSG00000085987.2 ENSMUSG00000085987 ENSMUST00000134271 Gm13403 lincRNA Interval_58020 chr15 26308188 26309907 + 0 NA promoter-TSS (ENSMUSG00000022269.13) protein_coding-promoter-TSS (ENSMUSG00000022269.13) -78672 ENSMUSG00000022269.13 ENSMUSG00000022269 ENSMUST00000155819 Marchf11 protein_coding Interval_4771 chr1 78524945 78525794 + 0 NA intron (ENSMUSG00000012187.13, intron 3 of 4) protein_coding-intron (ENSMUSG00000012187.13, intron 3 of 5) 13557 ENSMUSG00000012187.13 ENSMUSG00000012187 ENSMUST00000125458 Mogat1 protein_coding Interval_99187 chr2 157895629 157896570 + 0 NA Intergenic Intergenic -5437 ENSMUSG00000062846.7 ENSMUSG00000062846 ENSMUST00000121302 Gm14176 processed_pseudogene Interval_165098 chr9 44555856 44556045 + 0 NA intron (ENSMUSG00000047880.15, intron 1 of 1) protein_coding-intron (ENSMUSG00000047880.15, intron 1 of 2) -23677 ENSMUSG00000111378.1 ENSMUSG00000111378 ENSMUST00000215946 Gm47230 lincRNA Interval_106773 chr3 100679362 100680447 + 0 NA promoter-TSS (ENSMUSG00000083842.1) processed_pseudogene-promoter-TSS (ENSMUSG00000083842.1) 190 ENSMUSG00000106184.1 ENSMUSG00000106184 ENSMUST00000195967 Gm43463 sense_intronic Interval_17207 chr10 74990811 74991844 + 0 NA TTS (ENSMUSG00000040009.6) protein_coding-TTS (ENSMUSG00000040009.6) 24118 ENSMUSG00000040009.6 ENSMUSG00000040009 ENSMUST00000159991 Gnaz protein_coding Interval_9738 chr1 161538339 161539264 + 0 NA Intergenic Intergenic 13865 ENSMUSG00000089353.1 ENSMUSG00000089353 ENSMUST00000158728 Gm25488 rRNA Interval_2461 chr1 39527038 39528923 + 0 NA Intergenic Intergenic 8447 ENSMUSG00000065629.2 ENSMUSG00000065629 ENSMUST00000083695 Gm24826 snoRNA Interval_35039 chr12 16820518 16820787 + 0 NA exon (ENSMUSG00000057469.8, exon 4 of 4) protein_coding-exon (ENSMUSG00000057469.8, exon 4 of 4) 391 ENSMUSG00000057469.8 ENSMUSG00000057469 ENSMUST00000221600 E2f6 protein_coding Interval_108297 chr3 123401786 123402148 + 0 NA Intergenic Intergenic -10724 ENSMUSG00000080545.1 ENSMUSG00000080545 ENSMUST00000116895 Gm22713 snRNA Interval_107506 chr3 108178725 108178977 + 0 NA intron (ENSMUSG00000085318.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000085318.1, intron 1 of 1) -9250 ENSMUSG00000050947.9 ENSMUSG00000050947 ENSMUST00000155782 Amigo1 protein_coding Interval_27119 chr11 63109072 63109949 + 0 NA Intergenic Intergenic -23293 ENSMUSG00000018217.12 ENSMUSG00000018217 ENSMUST00000108700 Pmp22 protein_coding Interval_50932 chr14 20836134 20837304 + 0 NA promoter-TSS (ENSMUSG00000021822.3) protein_coding-promoter-TSS (ENSMUSG00000021822.3) -5 ENSMUSG00000021822.3 ENSMUSG00000021822 ENSMUST00000224141 Plau protein_coding Interval_61797 chr15 84215154 84215571 + 0 NA exon (ENSMUSG00000022437.7, exon 15 of 15) protein_coding-exon (ENSMUSG00000022437.7, exon 15 of 15) 13520 ENSMUSG00000022437.7 ENSMUSG00000022437 ENSMUST00000229751 Samm50 protein_coding Interval_33900 chr11 119265930 119266663 + 0 NA Intergenic Intergenic -8560 ENSMUSG00000025579.14 ENSMUSG00000025579 ENSMUST00000138510 Gaa protein_coding Interval_34855 chr12 12738569 12739313 + 0 NA Intergenic Intergenic 16080 ENSMUSG00000113009.1 ENSMUSG00000113009 ENSMUST00000222770 3732407C23Rik TEC Interval_61980 chr15 85615280 85616175 + 0 NA Intergenic Intergenic -30356 ENSMUSG00000116004.1 ENSMUSG00000116004 ENSMUST00000230234 Gm49539 lincRNA Interval_86602 chr19 41992455 41993048 + 0 NA intron (ENSMUSG00000025171.2, intron 1 of 2) protein_coding-intron (ENSMUSG00000025171.2, intron 1 of 2) -11612 ENSMUSG00000025159.8 ENSMUSG00000025159 ENSMUST00000169765 Mms19 protein_coding Interval_10692 chr1 173130383 173130594 + 0 NA exon (ENSMUSG00000062527.6, exon 1 of 1) protein_coding-exon (ENSMUSG00000062527.6, exon 1 of 1) 6886 ENSMUSG00000062527.6 ENSMUSG00000062527 ENSMUST00000073663 Olfr1408 protein_coding Interval_19992 chr10 111759224 111760302 + 0 NA intron (ENSMUSG00000112137.1, intron 2 of 3) lincRNA-intron (ENSMUSG00000112137.1, intron 2 of 3) -8015 ENSMUSG00000112706.1 ENSMUSG00000112706 ENSMUST00000219399 Gm46193 processed_pseudogene Interval_20855 chr10 121527258 121527577 + 0 NA intron (ENSMUSG00000118419.1, intron 1 of 1) unprocessed_pseudogene-intron (ENSMUSG00000118419.1, intron 1 of 1) 4959 ENSMUSG00000118419.1 ENSMUSG00000118419 ENSMUST00000238643 Gm50454 unprocessed_pseudogene Interval_148391 chr7 80980497 80980997 + 0 NA TTS (ENSMUSG00000109008.2) lincRNA-TTS (ENSMUSG00000109008.2) 854 ENSMUSG00000109367.1 ENSMUSG00000109367 ENSMUST00000209023 Gm18782 processed_pseudogene Interval_125827 chr5 74782565 74782863 + 0 NA Intergenic Intergenic 32832 ENSMUSG00000106987.1 ENSMUSG00000106987 ENSMUST00000202942 Gm42575 lincRNA Interval_173460 chrX 94133498 94133941 + 0 NA Intergenic Intergenic -10344 ENSMUSG00000079509.10 ENSMUSG00000079509 ENSMUST00000130312 Zfx protein_coding Interval_73356 chr17 36679907 36680143 + 0 NA Intergenic Intergenic -7806 ENSMUSG00000037334.2 ENSMUSG00000037334 ENSMUST00000041662 H2-M1 protein_coding Interval_126907 chr5 96982288 96983482 + 0 NA Intergenic Intergenic 14479 ENSMUSG00000105006.1 ENSMUSG00000105006 ENSMUST00000195892 Gm9484 lincRNA Interval_7009 chr1 121844531 121844722 + 0 NA Intergenic Intergenic 125898 ENSMUSG00000083584.1 ENSMUSG00000083584 ENSMUST00000119656 Gm15394 processed_pseudogene Interval_108395 chr3 126595989 126598006 + 0 NA promoter-TSS (ENSMUSG00000053819.16) protein_coding-promoter-TSS (ENSMUSG00000053819.16) -209 ENSMUSG00000053819.16 ENSMUSG00000053819 ENSMUST00000198637 Camk2d protein_coding Interval_68071 chr16 64845317 64846358 + 0 NA intron (ENSMUSG00000047141.5, intron 1 of 8) protein_coding-intron (ENSMUSG00000047141.5, intron 1 of 8) 5815 ENSMUSG00000047141.5 ENSMUSG00000047141 ENSMUST00000052588 Zfp654 protein_coding Interval_29977 chr11 88494304 88494988 + 0 NA intron (ENSMUSG00000069769.13, intron 1 of 5) protein_coding-intron (ENSMUSG00000069769.13, intron 6 of 13) -61132 ENSMUSG00000084411.2 ENSMUSG00000084411 ENSMUST00000120278 Gm11510 processed_pseudogene Interval_991 chr1 13664416 13664649 + 0 NA Intergenic Intergenic -4239 ENSMUSG00000067813.3 ENSMUSG00000067813 ENSMUST00000088542 Xkr9 protein_coding Interval_166827 chr9 63066825 63067198 + 0 NA Intergenic Intergenic 15962 ENSMUSG00000111144.1 ENSMUSG00000111144 ENSMUST00000214934 Gm48193 lincRNA Interval_131466 chr5 137398790 137399535 + 0 NA exon (ENSMUSG00000079173.11, exon 1 of 1) protein_coding-exon (ENSMUSG00000079173.11, exon 1 of 1) 2576 ENSMUSG00000079173.11 ENSMUSG00000079173 ENSMUST00000130056 Zan protein_coding Interval_34998 chr12 16550752 16551106 + 0 NA TTS (ENSMUSG00000020593.16) protein_coding-TTS (ENSMUSG00000020593.16) 60037 ENSMUSG00000020593.16 ENSMUSG00000020593 ENSMUST00000221146 Lpin1 protein_coding Interval_115700 chr4 102589748 102590061 + 0 NA promoter-TSS (ENSMUSG00000028525.16) protein_coding-promoter-TSS (ENSMUSG00000028525.16) -146908 ENSMUSG00000077260.1 ENSMUSG00000077260 ENSMUST00000104072 Gm24869 snoRNA Interval_77303 chr17 87920375 87921353 + 0 NA promoter-TSS (ENSMUSG00000093922.1) protein_coding-promoter-TSS (ENSMUSG00000093922.1) -113 ENSMUSG00000093922.1 ENSMUSG00000093922 ENSMUST00000179601 Rpl36-ps4 protein_coding Interval_36957 chr12 55586576 55587384 + 0 NA Intergenic Intergenic -12447 ENSMUSG00000045440.4 ENSMUSG00000045440 ENSMUST00000051857 Insm2 protein_coding Interval_99789 chr2 164917178 164918611 + 0 NA intron (ENSMUSG00000085436.1, intron 1 of 1) antisense-intron (ENSMUSG00000085436.1, intron 1 of 1) 3804 ENSMUSG00000085436.1 ENSMUSG00000085436 ENSMUST00000142338 Zfp335os antisense Interval_140298 chr6 116252869 116253281 + 0 NA intron (ENSMUSG00000024104.11, intron 22 of 24) protein_coding-intron (ENSMUSG00000024104.11, intron 23 of 30) -2731 ENSMUSG00000024104.11 ENSMUSG00000024104 ENSMUST00000203980 Washc2 protein_coding Interval_62443 chr15 93001218 93002581 + 0 NA promoter-TSS (ENSMUSG00000109770.1) lincRNA-promoter-TSS (ENSMUSG00000109770.1) -433 ENSMUSG00000109770.1 ENSMUSG00000109770 ENSMUST00000209724 Gm30085 lincRNA Interval_402 chr1 4906741 4906952 + 0 NA promoter-TSS (ENSMUSG00000103280.1) TEC-promoter-TSS (ENSMUSG00000103280.1) 15 ENSMUSG00000103280.1 ENSMUSG00000103280 ENSMUST00000194052 Gm37277 TEC Interval_80865 chr18 49643542 49644662 + 0 NA Intergenic Intergenic -62253 ENSMUSG00000088904.1 ENSMUSG00000088904 ENSMUST00000158279 Gm25440 snRNA Interval_63272 chr15 100030829 100031080 + 0 NA Intergenic Intergenic -57667 ENSMUSG00000100084.2 ENSMUSG00000100084 ENSMUST00000188271 2310068J16Rik antisense Interval_17535 chr10 77589129 77589316 + 0 NA promoter-TSS (ENSMUSG00000009291.13) protein_coding-promoter-TSS (ENSMUSG00000009291.13) 7499 ENSMUSG00000009291.13 ENSMUSG00000009291 ENSMUST00000167006 Pttg1ip protein_coding Interval_105933 chr3 90152694 90153154 + 0 NA intron (ENSMUSG00000027939.11, intron 14 of 39) protein_coding-intron (ENSMUSG00000027939.11, intron 14 of 39) 26157 ENSMUSG00000104649.1 ENSMUSG00000104649 ENSMUST00000198020 Gm43712 unprocessed_pseudogene Interval_80917 chr18 50172286 50172915 + 0 NA intron (ENSMUSG00000024507.6, intron 16 of 23) protein_coding-intron (ENSMUSG00000024507.6, intron 16 of 23) 36544 ENSMUSG00000117714.1 ENSMUSG00000117714 ENSMUST00000238008 Gm50439 processed_pseudogene Interval_172433 chrX 19831671 19831875 + 0 NA Intergenic Intergenic -39051 ENSMUSG00000084186.1 ENSMUSG00000084186 ENSMUST00000117431 Rpl36-ps10 processed_pseudogene Interval_62056 chr15 86135004 86135647 + 0 NA intron (ENSMUSG00000035900.18, intron 18 of 18) protein_coding-intron (ENSMUSG00000035900.18, intron 18 of 18) -14259 ENSMUSG00000088357.1 ENSMUSG00000088357 ENSMUST00000157732 Gm24011 misc_RNA Interval_48913 chr13 104731115 104731540 + 0 NA intron (ENSMUSG00000021715.12, intron 10 of 13) protein_coding-intron (ENSMUSG00000021715.12, intron 10 of 13) 46396 ENSMUSG00000084860.1 ENSMUSG00000084860 ENSMUST00000131215 2610204G07Rik antisense Interval_162738 chr9 8197775 8198516 + 0 NA Intergenic Intergenic -23825 ENSMUSG00000031998.5 ENSMUSG00000031998 ENSMUST00000213708 1700128F08Rik transcribed_processed_pseudogene Interval_96774 chr2 128100704 128101118 + 0 NA intron (ENSMUSG00000027380.10, intron 9 of 10) protein_coding-intron (ENSMUSG00000027380.10, intron 16 of 17) 10987 ENSMUSG00000088175.1 ENSMUSG00000088175 ENSMUST00000157550 Gm23101 snRNA Interval_3230 chr1 55020531 55021182 + 0 NA intron (ENSMUSG00000025982.13, intron 1 of 6) protein_coding-intron (ENSMUSG00000025982.13, intron 1 of 24) 6538 ENSMUSG00000025982.13 ENSMUSG00000025982 ENSMUST00000188419 Sf3b1 protein_coding Interval_97633 chr2 141323806 141324291 + 0 NA intron (ENSMUSG00000068205.14, intron 5 of 16) protein_coding-intron (ENSMUSG00000068205.14, intron 5 of 17) -37057 ENSMUSG00000086450.1 ENSMUSG00000086450 ENSMUST00000151538 Macrod2os1 antisense Interval_64199 chr16 9040072 9040310 + 0 NA Intergenic Intergenic -9781 ENSMUSG00000116426.1 ENSMUSG00000116426 ENSMUST00000229201 Gm30567 lincRNA Interval_22966 chr11 18115282 18115657 + 0 NA Intergenic Intergenic 19483 ENSMUSG00000085453.1 ENSMUSG00000085453 ENSMUST00000150694 Gm12018 lincRNA Interval_40306 chr12 103409981 103410286 + 0 NA exon (ENSMUSG00000041645.14, exon 1 of 1) protein_coding-exon (ENSMUSG00000041645.14, exon 1 of 1) -2157 ENSMUSG00000055271.5 ENSMUSG00000055271 ENSMUST00000238327 9330161L09Rik TEC Interval_60042 chr15 64185740 64186728 + 0 NA intron (ENSMUSG00000022377.16, intron 5 of 30) protein_coding-intron (ENSMUSG00000022377.16, intron 5 of 30) -62428 ENSMUSG00000022377.16 ENSMUSG00000022377 ENSMUST00000175963 Asap1 protein_coding Interval_2486 chr1 39700355 39703117 + 0 NA intron (ENSMUSG00000057173.8, intron 4 of 14) protein_coding-intron (ENSMUSG00000057173.8, intron 4 of 14) 19261 ENSMUSG00000057173.8 ENSMUSG00000057173 ENSMUST00000126760 Rfx8 protein_coding Interval_146005 chr7 43054956 43057230 + 0 NA Intergenic Intergenic 4920 ENSMUSG00000108666.1 ENSMUSG00000108666 ENSMUST00000205615 Gm44538 processed_pseudogene Interval_81817 chr18 64981821 64982103 + 0 NA intron (ENSMUSG00000117895.1, intron 2 of 2) protein_coding-intron (ENSMUSG00000024589.18, intron 1 of 29) 19213 ENSMUSG00000117895.1 ENSMUSG00000117895 ENSMUST00000237218 Gm50368 antisense Interval_15761 chr10 56227958 56229379 + 0 NA promoter-TSS (ENSMUSG00000038122.9) protein_coding-promoter-TSS (ENSMUSG00000038122.9) 21 ENSMUSG00000038122.9 ENSMUSG00000038122 ENSMUST00000217792 Tbc1d32 protein_coding Interval_98665 chr2 154038829 154039455 + 0 NA Intergenic Intergenic -10547 ENSMUSG00000118490.1 ENSMUSG00000118490 ENSMUST00000238877 AL732466.1 processed_pseudogene Interval_18101 chr10 82505364 82505574 + 0 NA Intergenic Intergenic -12851 ENSMUSG00000094186.2 ENSMUSG00000094186 ENSMUST00000177934 Gm1553 protein_coding Interval_25468 chr11 48787197 48789552 + 0 NA Intergenic Intergenic -11958 ENSMUSG00000020372.15 ENSMUSG00000020372 ENSMUST00000136849 Rack1 protein_coding Interval_90728 chr2 32150620 32152220 + 0 NA intron (ENSMUSG00000039262.16, intron 1 of 31) protein_coding-intron (ENSMUSG00000039262.16, intron 1 of 29) -21751 ENSMUSG00000099155.1 ENSMUSG00000099155 ENSMUST00000184513 Gm27805 miRNA Interval_59828 chr15 59598679 59599457 + 0 NA intron (ENSMUSG00000059586.10, intron 7 of 7) protein_coding-intron (ENSMUSG00000059586.10, intron 6 of 6) -19522 ENSMUSG00000115896.1 ENSMUSG00000115896 ENSMUST00000229684 Gm36677 lincRNA Interval_109958 chr3 152175635 152176070 + 0 NA Intergenic Intergenic 10478 ENSMUSG00000097293.1 ENSMUSG00000097293 ENSMUST00000181854 D630002J18Rik TEC Interval_124434 chr5 46874378 46874838 + 0 NA Intergenic Intergenic 79928 ENSMUSG00000107113.1 ENSMUSG00000107113 ENSMUST00000202986 Gm43092 TEC Interval_40205 chr12 102544940 102546189 + 0 NA Intergenic Intergenic -12504 ENSMUSG00000021194.6 ENSMUSG00000021194 ENSMUST00000223100 Chga protein_coding Interval_120766 chr4 150533165 150534210 + 0 NA intron (ENSMUSG00000039852.17, intron 10 of 22) protein_coding-intron (ENSMUSG00000039852.17, intron 4 of 16) 34857 ENSMUSG00000085213.1 ENSMUSG00000085213 ENSMUST00000128800 Gm13091 antisense Interval_100077 chr2 166956234 166957446 + 0 NA intron (ENSMUSG00000039536.16, intron 3 of 11) protein_coding-intron (ENSMUSG00000039536.16, intron 4 of 11) 7876 ENSMUSG00000039536.16 ENSMUSG00000039536 ENSMUST00000130104 Stau1 protein_coding Interval_153634 chr8 4141425 4141953 + 0 NA Intergenic Intergenic 7591 ENSMUSG00000079168.4 ENSMUSG00000079168 ENSMUST00000130372 Cd209g protein_coding Interval_131697 chr5 139355339 139356207 + 0 NA intron (ENSMUSG00000029541.12, intron 2 of 4) protein_coding-intron (ENSMUSG00000029541.12, intron 5 of 8) 3156 ENSMUSG00000029541.12 ENSMUSG00000029541 ENSMUST00000197955 Cyp2w1 protein_coding Interval_92302 chr2 58543742 58543983 + 0 NA intron (ENSMUSG00000026836.15, intron 1 of 11) protein_coding-intron (ENSMUSG00000026836.15, intron 1 of 10) -27590 ENSMUSG00000026836.15 ENSMUSG00000026836 ENSMUST00000126407 Acvr1 protein_coding Interval_153417 chr7 144567504 144568358 + 0 NA intron (ENSMUSG00000073778.2, intron 1 of 1) antisense-intron (ENSMUSG00000073778.2, intron 1 of 1) 576 ENSMUSG00000073778.2 ENSMUSG00000073778 ENSMUST00000097928 Faddos antisense Interval_170273 chr9 106613290 106613994 + 0 NA Intergenic Intergenic -12339 ENSMUSG00000091129.3 ENSMUSG00000091129 ENSMUST00000171091 Iqcf6 protein_coding Interval_135290 chr6 38092748 38093443 + 0 NA TTS (ENSMUSG00000038600.12) protein_coding-TTS (ENSMUSG00000038600.12) -9723 ENSMUSG00000038600.12 ENSMUSG00000038600 ENSMUST00000130816 Atp6v0a4 protein_coding Interval_15703 chr10 53811552 53812194 + 0 NA Intergenic Intergenic -8344 ENSMUSG00000112809.1 ENSMUSG00000112809 ENSMUST00000217870 Gm47915 lincRNA Interval_182 JH792828.1 196859 197218 + 0 NA NA NA NA NA Interval_139153 chr6 96372549 96372724 + 0 NA intron (ENSMUSG00000059187.12, intron 2 of 4) protein_coding-intron (ENSMUSG00000059187.12, intron 1 of 3) 96895 ENSMUSG00000065239.1 ENSMUSG00000065239 ENSMUST00000083305 Gm22971 snRNA Interval_205 KQ030491.1 4834 5584 + 0 NA NA NA NA NA Interval_6073 chr1 95901836 95902096 + 0 NA Intergenic Intergenic -69731 ENSMUSG00000095955.1 ENSMUSG00000095955 ENSMUST00000179775 Gm22360 snRNA Interval_112143 chr4 34922149 34922808 + 0 NA Intergenic Intergenic 3349 ENSMUSG00000083956.1 ENSMUSG00000083956 ENSMUST00000119806 Gm12361 processed_pseudogene Interval_127930 chr5 109290633 109290869 + 0 NA intron (ENSMUSG00000091375.2, intron 4 of 5) protein_coding-intron (ENSMUSG00000091375.2, intron 4 of 5) 6893 ENSMUSG00000091375.2 ENSMUSG00000091375 ENSMUST00000233282 Vmn2r15 protein_coding Interval_23635 chr11 23996374 23997174 + 0 NA Intergenic Intergenic -17881 ENSMUSG00000104783.1 ENSMUSG00000104783 ENSMUST00000199670 Gm44381 miRNA Interval_77164 chr17 87012305 87012569 + 0 NA intron (ENSMUSG00000024145.6, intron 4 of 5) protein_coding-intron (ENSMUSG00000024145.6, intron 4 of 5) 12969 ENSMUSG00000024145.6 ENSMUSG00000024145 ENSMUST00000024957 Pigf protein_coding Interval_48329 chr13 98241616 98242152 + 0 NA Intergenic Intergenic 12273 ENSMUSG00000041747.3 ENSMUSG00000041747 ENSMUST00000224842 Utp15 protein_coding Interval_144263 chr7 24111793 24113318 + 0 NA exon (ENSMUSG00000108703.1, exon 2 of 2) antisense-exon (ENSMUSG00000108703.1, exon 2 of 2) 4045 ENSMUSG00000108703.1 ENSMUSG00000108703 ENSMUST00000136923 Gm44793 antisense Interval_170169 chr9 105841235 105841996 + 0 NA Intergenic Intergenic -13530 ENSMUSG00000043719.14 ENSMUSG00000043719 ENSMUST00000060896 Col6a6 protein_coding Interval_37434 chr12 68578035 68579244 + 0 NA Intergenic Intergenic -22331 ENSMUSG00000084660.1 ENSMUSG00000084660 ENSMUST00000122711 n-R5s61 rRNA Interval_172832 chrX 50807001 50807459 + 0 NA Intergenic Intergenic -71158 ENSMUSG00000031112.10 ENSMUSG00000031112 ENSMUST00000146956 Stk26 protein_coding Interval_51110 chr14 23400776 23401353 + 0 NA intron (ENSMUSG00000063142.15, intron 18 of 27) protein_coding-intron (ENSMUSG00000063142.15, intron 17 of 28) 79920 ENSMUSG00000114803.1 ENSMUSG00000114803 ENSMUST00000225611 Gm46443 processed_pseudogene Interval_110906 chr4 9874238 9875290 + 0 NA Intergenic Intergenic 30392 ENSMUSG00000051279.2 ENSMUSG00000051279 ENSMUST00000057613 Gdf6 protein_coding Interval_105532 chr3 87411067 87411972 + 0 NA Intergenic Intergenic -24254 ENSMUSG00000048031.15 ENSMUSG00000048031 ENSMUST00000178261 Fcrl5 protein_coding Interval_12691 chr10 4344016 4344452 + 0 NA intron (ENSMUSG00000038587.10, intron 1 of 1) protein_coding-intron (ENSMUSG00000038587.10, intron 2 of 3) 9689 ENSMUSG00000038587.10 ENSMUSG00000038587 ENSMUST00000215696 Akap12 protein_coding Interval_42182 chr13 9636623 9637127 + 0 NA exon (ENSMUSG00000113355.1, exon 1 of 1) TEC-exon (ENSMUSG00000113355.1, exon 1 of 1) 214 ENSMUSG00000113355.1 ENSMUSG00000113355 ENSMUST00000223052 Gm48888 TEC Interval_167970 chr9 75080180 75080632 + 0 NA intron (ENSMUSG00000034593.16, intron 1 of 40) protein_coding-intron (ENSMUSG00000034593.16, intron 1 of 40) 9020 ENSMUSG00000034593.16 ENSMUSG00000034593 ENSMUST00000153404 Myo5a protein_coding Interval_9888 chr1 163834226 163834945 + 0 NA intron (ENSMUSG00000026585.13, intron 10 of 20) protein_coding-intron (ENSMUSG00000026585.13, intron 10 of 19) 55002 ENSMUSG00000026585.13 ENSMUSG00000026585 ENSMUST00000027877 Kifap3 protein_coding Interval_172716 chrX 47866267 47866799 + 0 NA intron (ENSMUSG00000031099.16, intron 9 of 17) protein_coding-intron (ENSMUSG00000031099.16, intron 9 of 23) 26408 ENSMUSG00000031099.16 ENSMUSG00000031099 ENSMUST00000140756 Smarca1 protein_coding Interval_56903 chr14 123041847 123042250 + 0 NA Intergenic Intergenic -1234 ENSMUSG00000115016.1 ENSMUSG00000115016 ENSMUST00000226524 AA536875 processed_transcript Interval_23715 chr11 25155537 25156105 + 0 NA Intergenic Intergenic -76805 ENSMUSG00000033015.16 ENSMUSG00000033015 ENSMUST00000044347 4933427E13Rik lincRNA Interval_49219 chr13 109567694 109567933 + 0 NA intron (ENSMUSG00000021699.17, intron 1 of 14) protein_coding-intron (ENSMUSG00000021699.17, intron 1 of 14) 243069 ENSMUSG00000076946.2 ENSMUSG00000076946 ENSMUST00000103758 Mir582 miRNA Interval_144397 chr7 24904031 24905160 + 0 NA TTS (ENSMUSG00000040940.18) protein_coding-intron (ENSMUSG00000040940.18, intron 1 of 7) 239 ENSMUSG00000040940.18 ENSMUSG00000040940 ENSMUST00000132786 Arhgef1 protein_coding Interval_137423 chr6 72164483 72165392 + 0 NA intron (ENSMUSG00000108371.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000108371.1, intron 1 of 1) 2088 ENSMUSG00000108371.1 ENSMUSG00000108371 ENSMUST00000205674 Gm38832 lincRNA Interval_152017 chr7 128288896 128289713 + 0 NA promoter-TSS (ENSMUSG00000030780.15) protein_coding-promoter-TSS (ENSMUSG00000030780.15) -869 ENSMUSG00000093215.1 ENSMUSG00000093215 ENSMUST00000175474 Mir3103 miRNA Interval_36480 chr12 45622790 45623644 + 0 NA Intergenic Intergenic 48576 ENSMUSG00000112604.1 ENSMUSG00000112604 ENSMUST00000217744 Gm48518 TEC Interval_20822 chr10 121305445 121306025 + 0 NA intron (ENSMUSG00000052302.6, intron 4 of 5) protein_coding-intron (ENSMUSG00000052302.6, intron 3 of 11) -37441 ENSMUSG00000111940.1 ENSMUSG00000111940 ENSMUST00000218322 Gm4478 processed_pseudogene Interval_62610 chr15 95577536 95577827 + 0 NA Intergenic Intergenic 28984 ENSMUSG00000089560.1 ENSMUSG00000089560 ENSMUST00000158935 Gm24668 snRNA Interval_95591 chr2 112521043 112521594 + 0 NA intron (ENSMUSG00000003604.14, intron 2 of 5) protein_coding-intron (ENSMUSG00000003604.14, intron 2 of 5) 20449 ENSMUSG00000080622.1 ENSMUSG00000080622 ENSMUST00000116972 Gm22676 snoRNA Interval_162817 chr9 9468430 9468638 + 0 NA intron (ENSMUSG00000111061.1, intron 2 of 3) lincRNA-intron (ENSMUSG00000111061.1, intron 2 of 3) 33942 ENSMUSG00000111317.1 ENSMUSG00000111317 ENSMUST00000217395 Gm47333 processed_pseudogene Interval_102000 chr3 14658791 14659137 + 0 NA intron (ENSMUSG00000027555.8, intron 6 of 6) protein_coding-intron (ENSMUSG00000027555.8, intron 6 of 6) 17237 ENSMUSG00000027555.8 ENSMUSG00000027555 ENSMUST00000029071 Car13 protein_coding Interval_115935 chr4 106387989 106388609 + 0 NA intron (ENSMUSG00000028514.15, intron 34 of 67) protein_coding-intron (ENSMUSG00000028514.15, intron 34 of 67) 72086 ENSMUSG00000028514.15 ENSMUSG00000028514 ENSMUST00000150521 Usp24 protein_coding Interval_42354 chr13 12298962 12299667 + 0 NA intron (ENSMUSG00000052374.16, intron 8 of 21) protein_coding-intron (ENSMUSG00000052374.16, intron 7 of 20) -25218 ENSMUSG00000052374.16 ENSMUSG00000052374 ENSMUST00000110616 Actn2 protein_coding Interval_148083 chr7 79122076 79122553 + 0 NA intron (ENSMUSG00000030606.8, intron 2 of 4) protein_coding-intron (ENSMUSG00000030606.8, intron 2 of 4) 6365 ENSMUSG00000030606.8 ENSMUSG00000030606 ENSMUST00000206402 Hapln3 protein_coding Interval_152235 chr7 130827564 130827960 + 0 NA intron (ENSMUSG00000030849.18, intron 2 of 6) protein_coding-intron (ENSMUSG00000030849.18, intron 2 of 6) 38568 ENSMUSG00000086108.2 ENSMUSG00000086108 ENSMUST00000146366 Gm5602 antisense Interval_15443 chr10 46730441 46731486 + 0 NA Intergenic Intergenic 60819 ENSMUSG00000111754.1 ENSMUSG00000111754 ENSMUST00000217086 Gm19994 processed_pseudogene Interval_166398 chr9 58977586 58980050 + 0 NA promoter-TSS (ENSMUSG00000111846.1) antisense-promoter-TSS (ENSMUSG00000111846.1) -433 ENSMUSG00000111846.1 ENSMUSG00000111846 ENSMUST00000216941 Gm47271 antisense Interval_153036 chr7 141000843 141001588 + 0 NA Intergenic Intergenic -7702 ENSMUSG00000110355.1 ENSMUSG00000110355 ENSMUST00000209475 Gm7514 processed_pseudogene Interval_6746 chr1 119152369 119152972 + 0 NA Intergenic Intergenic -4916 ENSMUSG00000096939.1 ENSMUSG00000096939 ENSMUST00000181691 Gm8321 processed_pseudogene Interval_128849 chr5 115576382 115576648 + 0 NA exon (ENSMUSG00000041638.18, exon 4 of 7) protein_coding-exon (ENSMUSG00000041638.18, exon 4 of 7) -4434 ENSMUSG00000099047.1 ENSMUSG00000099047 ENSMUST00000184777 Mir7029 miRNA Interval_3908 chr1 64705037 64705737 + 0 NA intron (ENSMUSG00000070871.10, intron 3 of 4) protein_coding-intron (ENSMUSG00000070871.10, intron 3 of 9) 14204 ENSMUSG00000070871.10 ENSMUSG00000070871 ENSMUST00000094898 Ccnyl1 protein_coding Interval_28342 chr11 75293738 75294310 + 0 NA Intergenic Intergenic 24584 ENSMUSG00000106179.1 ENSMUSG00000106179 ENSMUST00000198372 Gm47300 miRNA Interval_101083 chr2 177229998 177231627 + 0 NA Intergenic Intergenic -1849 ENSMUSG00000083817.1 ENSMUSG00000083817 ENSMUST00000117234 Gm14400 unprocessed_pseudogene Interval_35139 chr12 17526411 17526703 + 0 NA Intergenic Intergenic -18415 ENSMUSG00000011179.8 ENSMUSG00000011179 ENSMUST00000222250 Odc1 protein_coding Interval_161484 chr8 120671800 120672083 + 0 NA promoter-TSS (ENSMUSG00000031818.12) protein_coding-promoter-TSS (ENSMUSG00000031818.12) 3605 ENSMUSG00000031818.12 ENSMUSG00000031818 ENSMUST00000181026 Cox4i1 protein_coding Interval_71418 chr17 23630114 23631310 + 0 NA exon (ENSMUSG00000023903.8, exon 10 of 10) protein_coding-exon (ENSMUSG00000023903.8, exon 10 of 10) -5884 ENSMUSG00000117108.1 ENSMUSG00000117108 ENSMUST00000233781 Gm49935 processed_pseudogene Interval_157337 chr8 69643268 69643585 + 0 NA Intergenic Intergenic -11066 ENSMUSG00000091764.3 ENSMUSG00000091764 ENSMUST00000169125 Zfp964 protein_coding Interval_40411 chr12 104699808 104700104 + 0 NA intron (ENSMUSG00000041415.10, intron 1 of 1) protein_coding-intron (ENSMUSG00000041415.10, intron 22 of 26) 22096 ENSMUSG00000041415.10 ENSMUSG00000041415 ENSMUST00000222002 Dicer1 protein_coding Interval_158168 chr8 79455853 79456291 + 0 NA Intergenic Intergenic 34114 ENSMUSG00000109851.1 ENSMUSG00000109851 ENSMUST00000210554 Gm39288 processed_pseudogene Interval_111454 chr4 21763725 21764474 + 0 NA intron (ENSMUSG00000028251.5, intron 1 of 3) protein_coding-intron (ENSMUSG00000028251.5, intron 1 of 3) -3057 ENSMUSG00000040455.17 ENSMUSG00000040455 ENSMUST00000148647 Usp45 protein_coding Interval_127962 chr5 109869256 109869986 + 0 NA Intergenic Intergenic -16610 ENSMUSG00000097140.1 ENSMUSG00000097140 ENSMUST00000181101 Gm26779 lincRNA Interval_26766 chr11 60333620 60333833 + 0 NA intron (ENSMUSG00000000538.18, intron 1 of 8) protein_coding-intron (ENSMUSG00000000538.18, intron 1 of 12) -9519 ENSMUSG00000082148.1 ENSMUSG00000082148 ENSMUST00000120311 Gm12266 processed_pseudogene Interval_44459 chr13 44952039 44952971 + 0 NA intron (ENSMUSG00000057531.14, intron 7 of 7) protein_coding-intron (ENSMUSG00000057531.14, intron 7 of 9) 49547 ENSMUSG00000057531.14 ENSMUSG00000057531 ENSMUST00000223524 Dtnbp1 protein_coding Interval_60844 chr15 77109313 77109937 + 0 NA intron (ENSMUSG00000033565.18, intron 5 of 9) protein_coding-intron (ENSMUSG00000033565.18, intron 5 of 12) 6177 ENSMUSG00000116298.1 ENSMUSG00000116298 ENSMUST00000230697 4833412C15Rik TEC Interval_58019 chr15 26304823 26305651 + 0 NA Intergenic Intergenic -82482 ENSMUSG00000022269.13 ENSMUSG00000022269 ENSMUST00000155819 Marchf11 protein_coding Interval_54824 chr14 75525409 75526437 + 0 NA exon (ENSMUSG00000091722.2, exon 2 of 2) protein_coding-exon (ENSMUSG00000091722.2, exon 2 of 2) 67193 ENSMUSG00000034913.10 ENSMUSG00000034913 ENSMUST00000226623 Cby2 protein_coding Interval_118433 chr4 131484348 131485366 + 0 NA Intergenic Intergenic -2340 ENSMUSG00000078531.3 ENSMUSG00000078531 ENSMUST00000149942 Gm831 lincRNA Interval_75649 chr17 69894839 69895158 + 0 NA intron (ENSMUSG00000117233.1, intron 2 of 2) lincRNA-intron (ENSMUSG00000117233.1, intron 2 of 2) 28997 ENSMUSG00000117233.1 ENSMUSG00000117233 ENSMUST00000232745 Gm36594 lincRNA Interval_123752 chr5 35176288 35177698 + 0 NA Intergenic Intergenic -74479 ENSMUSG00000029103.16 ENSMUSG00000029103 ENSMUST00000132754 Lrpap1 protein_coding Interval_51326 chr14 26454733 26455554 + 0 NA intron (ENSMUSG00000021870.17, intron 8 of 18) protein_coding-intron (ENSMUSG00000021870.17, intron 12 of 22) 8551 ENSMUSG00000021870.17 ENSMUSG00000021870 ENSMUST00000144737 Slmap protein_coding Interval_107146 chr3 103904863 103905120 + 0 NA intron (ENSMUSG00000027843.13, intron 20 of 22) protein_coding-intron (ENSMUSG00000027843.13, intron 18 of 20) -2028 ENSMUSG00000083630.2 ENSMUSG00000083630 ENSMUST00000116162 Gm15602 processed_pseudogene Interval_149755 chr7 101288450 101288890 + 0 NA TTS (ENSMUSG00000047767.17) protein_coding-TTS (ENSMUSG00000047767.17) 13379 ENSMUSG00000047767.17 ENSMUSG00000047767 ENSMUST00000209093 Atg16l2 protein_coding Interval_92823 chr2 65946147 65946354 + 0 NA intron (ENSMUSG00000085160.1, intron 1 of 1) protein_coding-intron (ENSMUSG00000044647.16, intron 2 of 5) 7820 ENSMUSG00000085160.1 ENSMUSG00000085160 ENSMUST00000155350 Gm13617 antisense Interval_162260 chr8 126502778 126503187 + 0 NA Intergenic Intergenic -26570 ENSMUSG00000074026.3 ENSMUSG00000074026 ENSMUST00000098307 Gm6091 processed_pseudogene Interval_164838 chr9 42383127 42383583 + 0 NA intron (ENSMUSG00000037705.13, intron 7 of 23) protein_coding-intron (ENSMUSG00000037705.13, intron 7 of 23) -2507 ENSMUSG00000110937.1 ENSMUSG00000110937 ENSMUST00000215213 Gm47629 antisense Interval_38168 chr12 76130103 76130729 + 0 NA intron (ENSMUSG00000021055.14, intron 8 of 9) protein_coding-intron (ENSMUSG00000021055.14, intron 7 of 8) 22211 ENSMUSG00000046580.10 ENSMUSG00000046580 ENSMUST00000121461 Gm7862 processed_pseudogene Interval_158955 chr8 88221176 88221966 + 0 NA intron (ENSMUSG00000036779.12, intron 2 of 12) protein_coding-intron (ENSMUSG00000036779.12, intron 2 of 11) -30401 ENSMUSG00000036779.12 ENSMUSG00000036779 ENSMUST00000154115 Tent4b protein_coding Interval_88062 chr19 58684787 58685041 + 0 NA Intergenic Intergenic -10607 ENSMUSG00000118223.1 ENSMUSG00000118223 ENSMUST00000237665 1810035K13Rik lincRNA Interval_173714 chrX 102504377 102505639 + 0 NA promoter-TSS (ENSMUSG00000067567.12) protein_coding-promoter-TSS (ENSMUSG00000067567.12) 73 ENSMUSG00000067567.12 ENSMUSG00000067567 ENSMUST00000154024 Hdac8 protein_coding Interval_158742 chr8 85721515 85721718 + 0 NA intron (ENSMUSG00000031703.8, intron 17 of 17) protein_coding-intron (ENSMUSG00000031703.8, intron 17 of 17) 6094 ENSMUSG00000031703.8 ENSMUSG00000031703 ENSMUST00000210133 Itfg1 protein_coding Interval_100524 chr2 169910385 169910903 + 0 NA intron (ENSMUSG00000047907.11, intron 1 of 1) protein_coding-intron (ENSMUSG00000047907.11, intron 2 of 2) 25751 ENSMUSG00000047907.11 ENSMUSG00000047907 ENSMUST00000140699 Tshz2 protein_coding Interval_173205 chrX 74115355 74115870 + 0 NA intron (ENSMUSG00000031393.16, intron 1 of 3) protein_coding-intron (ENSMUSG00000031393.16, intron 1 of 3) 20575 ENSMUSG00000081118.1 ENSMUSG00000081118 ENSMUST00000119643 Gm6758 processed_pseudogene Interval_63414 chr15 100923536 100923781 + 0 NA intron (ENSMUSG00000023033.14, intron 2 of 2) protein_coding-intron (ENSMUSG00000023033.14, intron 1 of 26) -46464 ENSMUSG00000023033.14 ENSMUSG00000023033 ENSMUST00000201246 Scn8a protein_coding Interval_117423 chr4 123611094 123611738 + 0 NA intron (ENSMUSG00000028649.21, intron 1 of 97) protein_coding-intron (ENSMUSG00000028649.21, intron 1 of 92) 2327 ENSMUSG00000028649.21 ENSMUSG00000028649 ENSMUST00000146000 Macf1 protein_coding Interval_37583 chr12 70068949 70069465 + 0 NA intron (ENSMUSG00000021068.17, intron 5 of 30) protein_coding-intron (ENSMUSG00000021068.17, intron 5 of 29) 21410 ENSMUSG00000021068.17 ENSMUSG00000021068 ENSMUST00000239242 Nin protein_coding Interval_90902 chr2 33370245 33372127 + 0 NA intron (ENSMUSG00000038831.16, intron 1 of 18) protein_coding-intron (ENSMUSG00000038831.16, intron 1 of 16) -8140 ENSMUSG00000093138.1 ENSMUSG00000093138 ENSMUST00000175397 Gm25998 miRNA Interval_67947 chr16 60333946 60334233 + 0 NA intron (ENSMUSG00000055540.15, intron 3 of 17) protein_coding-intron (ENSMUSG00000055540.15, intron 3 of 17) 35074 ENSMUSG00000096535.1 ENSMUSG00000096535 ENSMUST00000179691 Gm24755 miRNA Interval_129442 chr5 120190345 120191360 + 0 NA intron (ENSMUSG00000029594.12, intron 3 of 3) protein_coding-intron (ENSMUSG00000029594.12, intron 23 of 23) 15127 ENSMUSG00000029594.12 ENSMUSG00000029594 ENSMUST00000202788 Rbm19 protein_coding Interval_46124 chr13 61855730 61855986 + 0 NA intron (ENSMUSG00000113626.1, intron 1 of 2) transcribed_processed_pseudogene-intron (ENSMUSG00000113626.1, intron 1 of 2) -32194 ENSMUSG00000080451.1 ENSMUSG00000080451 ENSMUST00000116801 Gm24193 miRNA Interval_15572 chr10 51641376 51642217 + 0 NA Intergenic Intergenic -10365 ENSMUSG00000019905.8 ENSMUSG00000019905 ENSMUST00000218684 Gprc6a protein_coding Interval_45403 chr13 54896469 54896670 + 0 NA Intergenic Intergenic 9099 ENSMUSG00000100728.1 ENSMUSG00000100728 ENSMUST00000189848 Gm29431 lincRNA Interval_6067 chr1 95742931 95743552 + 0 NA Intergenic Intergenic 5045 ENSMUSG00000102718.1 ENSMUSG00000102718 ENSMUST00000194989 Gm37761 TEC Interval_6851 chr1 120091858 120092044 + 0 NA Intergenic Intergenic -17877 ENSMUSG00000050777.7 ENSMUSG00000050777 ENSMUST00000056089 Tmem37 protein_coding Interval_140042 chr6 113604288 113605355 + 0 NA promoter-TSS (ENSMUSG00000033940.8) protein_coding-promoter-TSS (ENSMUSG00000033940.8) 49 ENSMUSG00000033940.8 ENSMUSG00000033940 ENSMUST00000035725 Brk1 protein_coding Interval_90198 chr2 28976751 28976950 + 0 NA intron (ENSMUSG00000079502.8, intron 3 of 5) protein_coding-intron (ENSMUSG00000079502.8, intron 3 of 5) -42241 ENSMUSG00000083773.4 ENSMUSG00000083773 ENSMUST00000121658 Gm13394 processed_pseudogene Interval_5086 chr1 84864141 84864420 + 0 NA intron (ENSMUSG00000073633.9, intron 2 of 4) protein_coding-intron (ENSMUSG00000073633.9, intron 1 of 3) -4871 ENSMUSG00000073633.9 ENSMUSG00000073633 ENSMUST00000151737 Fbxo36 protein_coding Interval_75379 chr17 66245922 66246602 + 0 NA Intergenic Intergenic -9893 ENSMUSG00000117220.1 ENSMUSG00000117220 ENSMUST00000233452 Gm49932 lincRNA Interval_45059 chr13 51781588 51782075 + 0 NA intron (ENSMUSG00000021451.16, intron 1 of 3) protein_coding-intron (ENSMUSG00000021451.16, intron 1 of 15) 11833 ENSMUSG00000021451.16 ENSMUSG00000021451 ENSMUST00000155896 Sema4d protein_coding Interval_118960 chr4 134724392 134726288 + 0 NA Intergenic Intergenic -21573 ENSMUSG00000037306.13 ENSMUSG00000037306 ENSMUST00000176606 Man1c1 protein_coding Interval_30062 chr11 88950141 88951540 + 0 NA intron (ENSMUSG00000000278.10, intron 2 of 12) protein_coding-intron (ENSMUSG00000000278.10, intron 2 of 12) 4625 ENSMUSG00000000278.10 ENSMUSG00000000278 ENSMUST00000000287 Scpep1 protein_coding Interval_118400 chr4 131138849 131140227 + 0 NA Intergenic Intergenic -99739 ENSMUSG00000088041.1 ENSMUSG00000088041 ENSMUST00000157416 Gm25261 snoRNA Interval_131655 chr5 139095225 139095971 + 0 NA intron (ENSMUSG00000025855.13, intron 3 of 6) protein_coding-intron (ENSMUSG00000025855.13, intron 4 of 10) 54403 ENSMUSG00000025855.13 ENSMUSG00000025855 ENSMUST00000130180 Prkar1b protein_coding Interval_34344 chr12 3518326 3520058 + 0 NA Intergenic Intergenic 4076 ENSMUSG00000112105.1 ENSMUSG00000112105 ENSMUST00000219719 Rps7-ps2 processed_pseudogene Interval_48502 chr13 99496245 99496592 + 0 NA intron (ENSMUSG00000052727.6, intron 2 of 6) protein_coding-intron (ENSMUSG00000052727.6, intron 2 of 6) 8021 ENSMUSG00000114282.1 ENSMUSG00000114282 ENSMUST00000223710 5330431K02Rik TEC Interval_45903 chr13 59011028 59011979 + 0 NA intron (ENSMUSG00000055254.15, intron 13 of 17) protein_coding-intron (ENSMUSG00000055254.15, intron 13 of 17) 66793 ENSMUSG00000114896.1 ENSMUSG00000114896 ENSMUST00000224384 Gm34245 TEC Interval_31945 chr11 103997131 103997971 + 0 NA Intergenic Intergenic 17962 ENSMUSG00000062421.13 ENSMUSG00000062421 ENSMUST00000154089 Arf2 protein_coding Interval_143010 chr6 148337045 148339636 + 0 NA intron (ENSMUSG00000030306.14, intron 5 of 16) protein_coding-intron (ENSMUSG00000030306.14, intron 5 of 19) -16370 ENSMUSG00000063171.4 ENSMUSG00000063171 ENSMUST00000204242 Rps4l transcribed_processed_pseudogene Interval_140095 chr6 114089287 114089761 + 0 NA Intergenic Intergenic 27328 ENSMUSG00000107474.1 ENSMUSG00000107474 ENSMUST00000204499 Gm43932 processed_pseudogene Interval_167765 chr9 72615038 72615237 + 0 NA exon (ENSMUSG00000037674.15, exon 8 of 9) protein_coding-exon (ENSMUSG00000037674.15, exon 8 of 9) 1916 ENSMUSG00000099051.1 ENSMUSG00000099051 ENSMUST00000185013 Gm27241 antisense Interval_46630 chr13 67754373 67755601 + 0 NA exon (ENSMUSG00000044081.7, exon 3 of 3) processed_transcript-exon (ENSMUSG00000044081.7, exon 3 of 3) 241 ENSMUSG00000058331.15 ENSMUSG00000058331 ENSMUST00000091520 Zfp85 protein_coding Interval_4947 chr1 82873359 82873912 + 0 NA intron (ENSMUSG00000026159.13, intron 3 of 12) protein_coding-intron (ENSMUSG00000026159.13, intron 3 of 12) 33966 ENSMUSG00000026159.13 ENSMUSG00000026159 ENSMUST00000186043 Agfg1 protein_coding Interval_102756 chr3 30831066 30832722 + 0 NA Intergenic Intergenic -3062 ENSMUSG00000104361.1 ENSMUSG00000104361 ENSMUST00000194035 Gm38080 processed_pseudogene Interval_95326 chr2 106544931 106545394 + 0 NA Intergenic Intergenic -22059 ENSMUSG00000087226.1 ENSMUSG00000087226 ENSMUST00000130634 Gm14015 lincRNA Interval_155107 chr8 26644837 26646260 + 0 NA Intergenic Intergenic 7873 ENSMUSG00000110338.1 ENSMUSG00000110338 ENSMUST00000211586 Gm45584 lincRNA Interval_114477 chr4 80764334 80764793 + 0 NA Intergenic Intergenic -82025 ENSMUSG00000005994.14 ENSMUSG00000005994 ENSMUST00000133932 Tyrp1 protein_coding Interval_139942 chr6 112945166 112945430 + 0 NA intron (ENSMUSG00000030257.16, intron 1 of 21) protein_coding-intron (ENSMUSG00000030257.16, intron 1 of 9) -1739 ENSMUSG00000108103.1 ENSMUSG00000108103 ENSMUST00000204406 Gm44081 lincRNA Interval_166209 chr9 57509343 57511359 + 0 NA Intergenic Intergenic 6325 ENSMUSG00000062309.8 ENSMUSG00000062309 ENSMUST00000080514 Rpp25 protein_coding Interval_37391 chr12 66339618 66339843 + 0 NA intron (ENSMUSG00000114093.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000114093.1, intron 1 of 2) 28655 ENSMUSG00000114093.1 ENSMUSG00000114093 ENSMUST00000221562 Gm47979 lincRNA Interval_122161 chr5 18452360 18453734 + 0 NA Intergenic Intergenic 37147 ENSMUSG00000104718.1 ENSMUSG00000104718 ENSMUST00000199456 Gm31752 lincRNA Interval_102044 chr3 16086377 16087509 + 0 NA Intergenic Intergenic -8619 ENSMUSG00000103535.1 ENSMUSG00000103535 ENSMUST00000195875 Gm37836 processed_pseudogene Interval_62188 chr15 88690697 88691809 + 0 NA exon (ENSMUSG00000022387.17, exon 9 of 12) protein_coding-exon (ENSMUSG00000022387.17, exon 9 of 12) 27902 ENSMUSG00000022387.17 ENSMUSG00000022387 ENSMUST00000139515 Brd1 protein_coding Interval_13353 chr10 16777941 16778263 + 0 NA Intergenic Intergenic 8359 ENSMUSG00000112118.1 ENSMUSG00000112118 ENSMUST00000217816 Gm18039 processed_pseudogene Interval_137451 chr6 72535260 72536019 + 0 NA Intergenic Intergenic -13819 ENSMUSG00000056737.14 ENSMUSG00000056737 ENSMUST00000127770 Capg protein_coding Interval_15732 chr10 55150222 55150426 + 0 NA Intergenic Intergenic 25962 ENSMUSG00000112755.1 ENSMUSG00000112755 ENSMUST00000219650 Gm46190 processed_pseudogene Interval_39198 chr12 85763936 85764952 + 0 NA intron (ENSMUSG00000034258.4, intron 1 of 9) protein_coding-intron (ENSMUSG00000034258.4, intron 1 of 9) -10386 ENSMUSG00000034258.4 ENSMUSG00000034258 ENSMUST00000221585 Flvcr2 protein_coding Interval_77841 chr18 4401505 4401873 + 0 NA TTS (ENSMUSG00000117579.1) lincRNA-TTS (ENSMUSG00000117579.1) 2361 ENSMUSG00000117579.1 ENSMUSG00000117579 ENSMUST00000234374 Gm50023 lincRNA Interval_56117 chr14 105900726 105901124 + 0 NA Intergenic Intergenic -4106 ENSMUSG00000022114.5 ENSMUSG00000022114 ENSMUST00000022709 Spry2 protein_coding Interval_147455 chr7 67439851 67440051 + 0 NA intron (ENSMUSG00000109329.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000109329.1, intron 1 of 2) 3982 ENSMUSG00000109329.1 ENSMUSG00000109329 ENSMUST00000208755 Gm33926 lincRNA Interval_11495 chr1 182208982 182209273 + 0 NA Intergenic Intergenic -44641 ENSMUSG00000091013.3 ENSMUSG00000091013 ENSMUST00000169123 Vmn1r1 protein_coding Interval_134233 chr6 23355735 23356527 + 0 NA promoter-TSS (ENSMUSG00000017978.18) protein_coding-promoter-TSS (ENSMUSG00000017978.18) 104998 ENSMUSG00000106775.1 ENSMUSG00000106775 ENSMUST00000202489 C130093G08Rik TEC Interval_51924 chr14 33965658 33966569 + 0 NA TTS (ENSMUSG00000044519.8) protein_coding-TTS (ENSMUSG00000044519.8) 12110 ENSMUSG00000041534.9 ENSMUSG00000041534 ENSMUST00000035695 Rbp3 protein_coding Interval_113845 chr4 59312975 59313185 + 0 NA Intergenic Intergenic 2886 ENSMUSG00000038578.15 ENSMUSG00000038578 ENSMUST00000136077 Susd1 protein_coding Interval_52205 chr14 40455143 40456235 + 0 NA Intergenic Intergenic 6572 ENSMUSG00000114280.1 ENSMUSG00000114280 ENSMUST00000225248 Gm2791 processed_pseudogene Interval_170337 chr9 107265387 107266167 + 0 NA intron (ENSMUSG00000032577.16, intron 1 of 7) protein_coding-intron (ENSMUSG00000032577.16, intron 2 of 10) 23567 ENSMUSG00000032577.16 ENSMUSG00000032577 ENSMUST00000141596 Mapkapk3 protein_coding Interval_5777 chr1 91747731 91748021 + 0 NA Intergenic Intergenic -53594 ENSMUSG00000007805.4 ENSMUSG00000007805 ENSMUST00000186075 Twist2 protein_coding Interval_3563 chr1 59609031 59610023 + 0 NA intron (ENSMUSG00000047361.16, intron 2 of 4) protein_coding-intron (ENSMUSG00000047361.16, intron 13 of 19) -17053 ENSMUSG00000089276.1 ENSMUSG00000089276 ENSMUST00000158651 Gm24545 misc_RNA Interval_55861 chr14 101617869 101618216 + 0 NA Intergenic Intergenic -9556 ENSMUSG00000033083.16 ENSMUSG00000033083 ENSMUST00000160473 Tbc1d4 protein_coding Interval_134358 chr6 26484580 26484800 + 0 NA Intergenic Intergenic -24260 ENSMUSG00000088387.1 ENSMUSG00000088387 ENSMUST00000157762 Gm24691 snRNA Interval_21275 chr10 127600615 127600805 + 0 NA exon (ENSMUSG00000040249.15, exon 7 of 7) protein_coding-exon (ENSMUSG00000040249.15, exon 7 of 7) 4162 ENSMUSG00000086499.1 ENSMUSG00000086499 ENSMUST00000124182 Gm16217 antisense Interval_32560 chr11 108595160 108596202 + 0 NA intron (ENSMUSG00000020728.17, intron 17 of 24) protein_coding-intron (ENSMUSG00000020728.17, intron 20 of 27) -9546 ENSMUSG00000020728.17 ENSMUSG00000020728 ENSMUST00000132978 Cep112 protein_coding Interval_153973 chr8 11575022 11575473 + 0 NA Intergenic Intergenic 19676 ENSMUSG00000045969.8 ENSMUSG00000045969 ENSMUST00000209565 Ing1 protein_coding Interval_151128 chr7 118723770 118724067 + 0 NA intron (ENSMUSG00000033904.16, intron 1 of 9) protein_coding-intron (ENSMUSG00000033904.16, intron 3 of 13) -2637 ENSMUSG00000033904.16 ENSMUSG00000033904 ENSMUST00000140831 Ccp110 protein_coding Interval_68493 chr16 78210585 78210903 + 0 NA Intergenic Intergenic -29514 ENSMUSG00000077451.1 ENSMUSG00000077451 ENSMUST00000104263 Gm25916 snoRNA Interval_155362 chr8 32442064 32442353 + 0 NA intron (ENSMUSG00000062991.9, intron 1 of 12) protein_coding-intron (ENSMUSG00000062991.9, intron 1 of 8) 256079 ENSMUSG00000089370.1 ENSMUSG00000089370 ENSMUST00000158745 Gm22140 snRNA Interval_91710 chr2 48538575 48539330 + 0 NA Intergenic Intergenic -81707 ENSMUSG00000086353.1 ENSMUSG00000086353 ENSMUST00000127672 Gm13481 lincRNA Interval_161257 chr8 119311191 119311642 + 0 NA intron (ENSMUSG00000031841.19, intron 2 of 3) protein_coding-intron (ENSMUSG00000031841.19, intron 11 of 13) -33100 ENSMUSG00000031839.7 ENSMUSG00000031839 ENSMUST00000212795 Hsbp1 protein_coding Interval_53088 chr14 54394923 54395158 + 0 NA intron (ENSMUSG00000000958.10, intron 2 of 2) protein_coding-intron (ENSMUSG00000000958.10, intron 2 of 9) 15162 ENSMUSG00000000958.10 ENSMUSG00000000958 ENSMUST00000195999 Slc7a7 protein_coding Interval_75729 chr17 70910067 70910590 + 0 NA intron (ENSMUSG00000097154.2, intron 1 of 2) lincRNA-intron (ENSMUSG00000097154.2, intron 1 of 2) 16204 ENSMUSG00000117156.1 ENSMUSG00000117156 ENSMUST00000233140 Gm49904 processed_pseudogene Interval_40578 chr12 105816552 105817020 + 0 NA intron (ENSMUSG00000021111.15, intron 12 of 20) protein_coding-intron (ENSMUSG00000021111.15, intron 12 of 22) -12281 ENSMUSG00000021111.15 ENSMUSG00000021111 ENSMUST00000172089 Papola protein_coding Interval_93849 chr2 77458566 77458880 + 0 NA intron (ENSMUSG00000027016.17, intron 3 of 7) protein_coding-intron (ENSMUSG00000027016.17, intron 3 of 7) -3946 ENSMUSG00000085845.7 ENSMUSG00000085845 ENSMUST00000126572 Gm13944 antisense Interval_81475 chr18 60989235 60991128 + 0 NA Intergenic Intergenic 24025 ENSMUSG00000052026.8 ENSMUSG00000052026 ENSMUST00000236893 Slc6a7 protein_coding Interval_37387 chr12 66294361 66294967 + 0 NA Intergenic Intergenic -10263 ENSMUSG00000060499.7 ENSMUSG00000060499 ENSMUST00000081908 Rpl10l protein_coding Interval_148932 chr7 90154330 90154760 + 0 NA intron (ENSMUSG00000039361.11, intron 1 of 3) protein_coding-intron (ENSMUSG00000039361.11, intron 1 of 20) 8597 ENSMUSG00000109498.1 ENSMUSG00000109498 ENSMUST00000207029 Gm45222 TEC Interval_132070 chr5 142608350 142609165 + 0 NA promoter-TSS (ENSMUSG00000039533.8) protein_coding-promoter-TSS (ENSMUSG00000039533.8) 43 ENSMUSG00000039533.8 ENSMUSG00000039533 ENSMUST00000196972 Mmd2 protein_coding Interval_159052 chr8 89083333 89083851 + 0 NA Intergenic Intergenic -39430 ENSMUSG00000031665.7 ENSMUSG00000031665 ENSMUST00000034090 Sall1 protein_coding Interval_134418 chr6 28504452 28504908 + 0 NA intron (ENSMUSG00000001424.14, intron 1 of 16) protein_coding-intron (ENSMUSG00000001424.14, intron 1 of 23) 24251 ENSMUSG00000001424.14 ENSMUSG00000001424 ENSMUST00000165151 Snd1 protein_coding Interval_136351 chr6 53664499 53665032 + 0 NA intron (ENSMUSG00000053007.9, intron 3 of 6) protein_coding-intron (ENSMUSG00000053007.9, intron 7 of 10) -3005 ENSMUSG00000108004.1 ENSMUSG00000108004 ENSMUST00000204451 Gm44080 TEC Interval_116404 chr4 111517201 111517599 + 0 NA intron (ENSMUSG00000061298.14, intron 2 of 6) protein_coding-intron (ENSMUSG00000061298.14, intron 6 of 12) -49295 ENSMUSG00000061298.14 ENSMUSG00000061298 ENSMUST00000142460 Agbl4 protein_coding Interval_142744 chr6 145292980 145293206 + 0 NA Intergenic Intergenic -4836 ENSMUSG00000087852.1 ENSMUSG00000087852 ENSMUST00000157227 Gm22793 misc_RNA Interval_80621 chr18 44698549 44698761 + 0 NA intron (ENSMUSG00000071856.10, intron 3 of 18) protein_coding-intron (ENSMUSG00000071856.10, intron 3 of 18) -36371 ENSMUSG00000071856.10 ENSMUSG00000071856 ENSMUST00000201270 Mcc protein_coding Interval_62209 chr15 88836211 88838329 + 0 NA Intergenic Intergenic 1970 ENSMUSG00000093831.1 ENSMUSG00000093831 ENSMUST00000180226 Gm23144 snRNA Interval_73547 chr17 40239493 40240390 + 0 NA intron (ENSMUSG00000025433.7, intron 1 of 7) protein_coding-intron (ENSMUSG00000025433.7, intron 1 of 7) 2347 ENSMUSG00000025433.7 ENSMUSG00000025433 ENSMUST00000026499 Crisp3 protein_coding Interval_157971 chr8 77429208 77429776 + 0 NA intron (ENSMUSG00000037148.8, intron 4 of 21) protein_coding-intron (ENSMUSG00000037148.8, intron 4 of 22) -56976 ENSMUSG00000109873.1 ENSMUSG00000109873 ENSMUST00000209499 Gm45407 TEC Interval_6764 chr1 119333695 119335743 + 0 NA intron (ENSMUSG00000101179.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000101179.1, intron 1 of 2) 5519 ENSMUSG00000101179.1 ENSMUSG00000101179 ENSMUST00000186504 Gm29455 lincRNA Interval_127828 chr5 108065154 108066385 + 0 NA promoter-TSS (ENSMUSG00000029267.17) protein_coding-promoter-TSS (ENSMUSG00000029267.17) 52 ENSMUSG00000029267.17 ENSMUSG00000029267 ENSMUST00000129921 Mtf2 protein_coding Interval_16578 chr10 64137677 64138151 + 0 NA intron (ENSMUSG00000060843.11, intron 7 of 17) protein_coding-intron (ENSMUSG00000060843.11, intron 6 of 16) -47667 ENSMUSG00000042846.8 ENSMUSG00000042846 ENSMUST00000133588 Lrrtm3 protein_coding Interval_169588 chr9 99311619 99311849 + 0 NA intron (ENSMUSG00000037681.13, intron 22 of 22) protein_coding-intron (ENSMUSG00000037681.13, intron 22 of 22) 4151 ENSMUSG00000103857.1 ENSMUSG00000103857 ENSMUST00000195185 Gm37249 TEC Interval_53467 chr14 57699491 57700554 + 0 NA promoter-TSS (ENSMUSG00000021959.16) protein_coding-promoter-TSS (ENSMUSG00000021959.16) 2009 ENSMUSG00000092358.1 ENSMUSG00000092358 ENSMUST00000172474 Gm20430 processed_pseudogene Interval_154198 chr8 13356093 13356973 + 0 NA intron (ENSMUSG00000038482.11, intron 1 of 3) protein_coding-intron (ENSMUSG00000038482.11, intron 1 of 10) 17712 ENSMUSG00000038482.11 ENSMUSG00000038482 ENSMUST00000209945 Tfdp1 protein_coding Interval_17331 chr10 75920858 75922097 + 0 NA exon (ENSMUSG00000000902.13, exon 1 of 9) protein_coding-exon (ENSMUSG00000000902.13, exon 1 of 9) -6313 ENSMUSG00000000902.13 ENSMUSG00000000902 ENSMUST00000146555 Smarcb1 protein_coding Interval_41059 chr12 110858926 110859205 + 0 NA promoter-TSS (ENSMUSG00000091498.4) processed_pseudogene-promoter-TSS (ENSMUSG00000091498.4) -171 ENSMUSG00000091498.4 ENSMUSG00000091498 ENSMUST00000181662 Mpc1-ps processed_pseudogene Interval_101207 chr2 179494531 179494985 + 0 NA intron (ENSMUSG00000000305.12, intron 2 of 2) protein_coding-intron (ENSMUSG00000000305.12, intron 2 of 15) 79822 ENSMUSG00000039138.1 ENSMUSG00000039138 ENSMUST00000041998 4930591A17Rik lincRNA Interval_78880 chr18 21107424 21107742 + 0 NA Intergenic Intergenic -30474 ENSMUSG00000062962.5 ENSMUSG00000062962 ENSMUST00000084199 Gm6378 processed_pseudogene Interval_32741 chr11 110268399 110268750 + 0 NA TTS (ENSMUSG00000018800.14) protein_coding-TTS (ENSMUSG00000018800.14) -16798 ENSMUSG00000044749.13 ENSMUSG00000044749 ENSMUST00000150988 Abca6 protein_coding Interval_101151 chr2 178533331 178533584 + 0 NA Intergenic Intergenic 72827 ENSMUSG00000039155.15 ENSMUSG00000039155 ENSMUST00000176869 Cdh26 protein_coding Interval_112353 chr4 40780898 40781792 + 0 NA Intergenic Intergenic -5781 ENSMUSG00000056412.6 ENSMUSG00000056412 ENSMUST00000121600 Psenen-ps processed_pseudogene Interval_56844 chr14 122388427 122389066 + 0 NA promoter-TSS (ENSMUSG00000095311.1) snRNA-promoter-TSS (ENSMUSG00000095311.1) -586 ENSMUSG00000095311.1 ENSMUSG00000095311 ENSMUST00000175481 Gm25464 snRNA Interval_103237 chr3 37302565 37303772 + 0 NA Intergenic Intergenic 9278 ENSMUSG00000045031.18 ENSMUSG00000045031 ENSMUST00000125252 Cetn4 protein_coding Interval_66588 chr16 35441350 35442899 + 0 NA intron (ENSMUSG00000022844.8, intron 7 of 16) protein_coding-intron (ENSMUSG00000022844.8, intron 7 of 16) -1761 ENSMUSG00000095160.1 ENSMUSG00000095160 ENSMUST00000178681 Gm25548 miRNA Interval_166418 chr9 59302785 59303594 + 0 NA intron (ENSMUSG00000025236.11, intron 2 of 6) protein_coding-intron (ENSMUSG00000025236.11, intron 2 of 6) 11631 ENSMUSG00000025236.11 ENSMUSG00000025236 ENSMUST00000215994 Adpgk protein_coding Interval_88309 chr2 3565014 3565304 + 0 NA Intergenic Intergenic -5329 ENSMUSG00000026655.15 ENSMUSG00000026655 ENSMUST00000176254 Fam107b protein_coding Interval_54935 chr14 76340914 76341388 + 0 NA Intergenic Intergenic -77677 ENSMUSG00000022010.19 ENSMUSG00000022010 ENSMUST00000133224 Tsc22d1 protein_coding Interval_111744 chr4 27146466 27147383 + 0 NA Intergenic Intergenic -20415 ENSMUSG00000083447.1 ENSMUSG00000083447 ENSMUST00000120562 Gm11904 processed_pseudogene Interval_91869 chr2 50786781 50787057 + 0 NA Intergenic Intergenic -122765 ENSMUSG00000083270.1 ENSMUSG00000083270 ENSMUST00000119159 Gm13498 processed_pseudogene Interval_124180 chr5 39177800 39177998 + 0 NA Intergenic Intergenic 129185 ENSMUSG00000106794.1 ENSMUSG00000106794 ENSMUST00000202596 Gm40293 lincRNA Interval_118711 chr4 133318178 133318627 + 0 NA intron (ENSMUSG00000037622.14, intron 1 of 2) protein_coding-intron (ENSMUSG00000037622.14, intron 3 of 15) 3828 ENSMUSG00000037622.14 ENSMUSG00000037622 ENSMUST00000140976 Wdtc1 protein_coding Interval_111353 chr4 19605783 19606243 + 0 NA intron (ENSMUSG00000078772.2, intron 1 of 4) protein_coding-intron (ENSMUSG00000028229.11, intron 9 of 9) 562 ENSMUSG00000078772.2 ENSMUSG00000078772 ENSMUST00000108250 Gm12353 protein_coding Interval_162832 chr9 9945872 9946322 + 0 NA intron (ENSMUSG00000039488.15, intron 7 of 18) protein_coding-intron (ENSMUSG00000039488.15, intron 11 of 22) 51666 ENSMUSG00000098408.1 ENSMUSG00000098408 ENSMUST00000183808 Mir6237 miRNA Interval_36833 chr12 54524621 54524937 + 0 NA Intergenic Intergenic -7700 ENSMUSG00000113947.1 ENSMUSG00000113947 ENSMUST00000223133 Gm10465 lincRNA Interval_112543 chr4 43005834 43006195 + 0 NA intron (ENSMUSG00000028453.10, intron 6 of 6) protein_coding-intron (ENSMUSG00000028453.10, intron 8 of 13) -2082 ENSMUSG00000028453.10 ENSMUSG00000028453 ENSMUST00000132273 Fancg protein_coding Interval_38152 chr12 75991790 75992697 + 0 NA intron (ENSMUSG00000063450.14, intron 57 of 114) protein_coding-intron (ENSMUSG00000063450.14, intron 57 of 115) 83140 ENSMUSG00000092922.1 ENSMUSG00000092922 ENSMUST00000175181 Mir5101 miRNA Interval_142261 chr6 140197314 140198609 + 0 NA Intergenic Intergenic -31316 ENSMUSG00000089558.1 ENSMUSG00000089558 ENSMUST00000158933 Gm24174 rRNA Interval_164413 chr9 36832365 36833867 + 0 NA promoter-TSS (ENSMUSG00000032118.16) protein_coding-promoter-TSS (ENSMUSG00000032118.16) 308 ENSMUSG00000032118.16 ENSMUSG00000032118 ENSMUST00000161978 Fez1 protein_coding Interval_9698 chr1 161140122 161140773 + 0 NA Intergenic Intergenic -2276 ENSMUSG00000044835.15 ENSMUSG00000044835 ENSMUST00000052245 Ankrd45 protein_coding Interval_35899 chr12 31725697 31727513 + 0 NA intron (ENSMUSG00000035933.5, intron 6 of 22) protein_coding-intron (ENSMUSG00000035933.5, intron 6 of 22) -12679 ENSMUSG00000044067.7 ENSMUSG00000044067 ENSMUST00000174480 Gpr22 protein_coding Interval_15552 chr10 51300282 51300530 + 0 NA Intergenic Intergenic 61577 ENSMUSG00000111880.1 ENSMUSG00000111880 ENSMUST00000218609 Gm5040 processed_pseudogene Interval_94170 chr2 84826419 84827881 + 0 NA promoter-TSS (ENSMUSG00000027076.10) protein_coding-promoter-TSS (ENSMUSG00000027076.10) -234 ENSMUSG00000027076.10 ENSMUSG00000027076 ENSMUST00000111631 Timm10 protein_coding Interval_41651 chr12 117401248 117401815 + 0 NA Intergenic Intergenic -64519 ENSMUSG00000101930.1 ENSMUSG00000101930 ENSMUST00000186454 Gm5441 antisense Interval_76741 chr17 83772771 83773219 + 0 NA intron (ENSMUSG00000055817.18, intron 7 of 16) protein_coding-intron (ENSMUSG00000055817.18, intron 8 of 16) 43831 ENSMUSG00000055817.18 ENSMUSG00000055817 ENSMUST00000175920 Mta3 protein_coding Interval_71713 chr17 25626104 25626469 + 0 NA intron (ENSMUSG00000002279.19, intron 4 of 6) protein_coding-intron (ENSMUSG00000002279.19, intron 4 of 10) 46966 ENSMUSG00000002279.19 ENSMUSG00000002279 ENSMUST00000156868 Lmf1 protein_coding Interval_155249 chr8 28815303 28815600 + 0 NA intron (ENSMUSG00000063626.6, intron 4 of 14) protein_coding-intron (ENSMUSG00000063626.6, intron 4 of 17) 221919 ENSMUSG00000097776.1 ENSMUSG00000097776 ENSMUST00000181267 Gm26795 lincRNA Interval_146603 chr7 47601638 47601877 + 0 NA promoter-TSS (ENSMUSG00000078698.3) protein_coding-promoter-TSS (ENSMUSG00000078698.3) -385 ENSMUSG00000078698.3 ENSMUSG00000078698 ENSMUST00000176369 Mrgpra3 protein_coding Interval_145728 chr7 37841713 37842895 + 0 NA Intergenic Intergenic -17957 ENSMUSG00000064591.1 ENSMUSG00000064591 ENSMUST00000082657 Gm22302 snRNA Interval_98544 chr2 153131219 153131671 + 0 NA intron (ENSMUSG00000003283.15, intron 6 of 12) protein_coding-intron (ENSMUSG00000003283.15, intron 6 of 12) 22977 ENSMUSG00000003283.15 ENSMUSG00000003283 ENSMUST00000003370 Hck protein_coding Interval_151157 chr7 118883055 118883262 + 0 NA intron (ENSMUSG00000073856.11, intron 3 of 4) protein_coding-intron (ENSMUSG00000073856.11, intron 4 of 8) 27406 ENSMUSG00000073856.11 ENSMUSG00000073856 ENSMUST00000132148 Iqck protein_coding Interval_64752 chr16 15107195 15107400 + 0 NA Intergenic Intergenic 106975 ENSMUSG00000116317.1 ENSMUSG00000116317 ENSMUST00000230174 Gm49536 processed_pseudogene Interval_56535 chr14 120119319 120119643 + 0 NA intron (ENSMUSG00000115146.1, intron 5 of 8) lincRNA-intron (ENSMUSG00000115146.1, intron 5 of 8) 11122 ENSMUSG00000114983.1 ENSMUSG00000114983 ENSMUST00000227459 Gm48997 lincRNA Interval_106373 chr3 95709688 95710912 + 0 NA Intergenic Intergenic 24673 ENSMUSG00000098737.1 ENSMUSG00000098737 ENSMUST00000183853 Mir7014 miRNA Interval_150450 chr7 110729039 110729260 + 0 NA Intergenic Intergenic -15752 ENSMUSG00000109749.1 ENSMUSG00000109749 ENSMUST00000209719 Gm18907 processed_pseudogene Interval_162634 chr9 7043062 7043451 + 0 NA intron (ENSMUSG00000047193.16, intron 65 of 89) protein_coding-intron (ENSMUSG00000047193.16, intron 64 of 88) 74332 ENSMUSG00000047193.16 ENSMUSG00000047193 ENSMUST00000139115 Dync2h1 protein_coding Interval_153530 chr8 3214421 3215688 + 0 NA intron (ENSMUSG00000005534.10, intron 2 of 2) protein_coding-intron (ENSMUSG00000005534.10, intron 2 of 20) -44650 ENSMUSG00000086065.1 ENSMUSG00000086065 ENSMUST00000128662 Gm16180 antisense Interval_105444 chr3 86550341 86551054 + 0 NA intron (ENSMUSG00000028080.16, intron 1 of 17) protein_coding-intron (ENSMUSG00000028080.16, intron 40 of 56) -2068 ENSMUSG00000057777.4 ENSMUSG00000057777 ENSMUST00000191695 Mab21l2 protein_coding Interval_128511 chr5 113744412 113744989 + 0 NA TTS (ENSMUSG00000018974.7) protein_coding-TTS (ENSMUSG00000018974.7) 8897 ENSMUSG00000053334.6 ENSMUSG00000053334 ENSMUST00000065698 Ficd protein_coding Interval_97863 chr2 144541346 144542110 + 0 NA TTS (ENSMUSG00000027428.9) protein_coding-TTS (ENSMUSG00000027428.9) 9062 ENSMUSG00000027428.9 ENSMUSG00000027428 ENSMUST00000140340 Rbbp9 protein_coding Interval_88381 chr2 4588015 4588469 + 0 NA promoter-TSS (ENSMUSG00000086018.7) antisense-promoter-TSS (ENSMUSG00000086018.7) -955 ENSMUSG00000086018.7 ENSMUSG00000086018 ENSMUST00000137801 Gm13179 antisense Interval_2237 chr1 37270360 37270639 + 0 NA Intergenic Intergenic 29198 ENSMUSG00000102231.1 ENSMUSG00000102231 ENSMUST00000192404 1700074A21Rik TEC Interval_65835 chr16 29666936 29668418 + 0 NA Intergenic Intergenic 80663 ENSMUSG00000038084.16 ENSMUSG00000038084 ENSMUST00000160101 Opa1 protein_coding Interval_43991 chr13 38814983 38816606 + 0 NA intron (ENSMUSG00000114319.1, intron 2 of 2) lincRNA-intron (ENSMUSG00000114767.1, intron 3 of 3) 9961 ENSMUSG00000114319.1 ENSMUSG00000114319 ENSMUST00000225304 Gm47509 lincRNA Interval_80137 chr18 37798267 37799029 + 0 NA intron (ENSMUSG00000102428.1, intron 1 of 3) protein_coding-intron (ENSMUSG00000103088.1, intron 1 of 3) -7716 ENSMUSG00000102918.1 ENSMUSG00000102918 ENSMUST00000192103 Pcdhgc3 protein_coding Interval_12924 chr10 8203374 8204303 + 0 NA TTS (ENSMUSG00000047712.8) protein_coding-TTS (ENSMUSG00000047712.8) 27707 ENSMUSG00000112109.1 ENSMUSG00000112109 ENSMUST00000219578 Gm30906 lincRNA Interval_78927 chr18 21774879 21775607 + 0 NA Intergenic Intergenic -120525 ENSMUSG00000042514.11 ENSMUSG00000042514 ENSMUST00000122333 Klhl14 protein_coding Interval_25302 chr11 46205672 46206106 + 0 NA intron (ENSMUSG00000020340.16, intron 28 of 30) protein_coding-intron (ENSMUSG00000020340.16, intron 28 of 30) -29642 ENSMUSG00000048721.2 ENSMUSG00000048721 ENSMUST00000060185 Fndc9 protein_coding Interval_34553 chr12 5071985 5072203 + 0 NA Intergenic Intergenic -4646 ENSMUSG00000112723.1 ENSMUSG00000112723 ENSMUST00000219035 Gm9110 processed_pseudogene Interval_100373 chr2 168694433 168695405 + 0 NA intron (ENSMUSG00000027546.15, intron 4 of 27) protein_coding-intron (ENSMUSG00000027546.15, intron 4 of 27) 47045 ENSMUSG00000027546.15 ENSMUSG00000027546 ENSMUST00000156555 Atp9a protein_coding Interval_33426 chr11 116488355 116488986 + 0 NA intron (ENSMUSG00000015869.16, intron 1 of 5) protein_coding-intron (ENSMUSG00000015869.16, intron 1 of 9) 1644 ENSMUSG00000015869.16 ENSMUSG00000015869 ENSMUST00000144154 Prpsap1 protein_coding Interval_167916 chr9 74248052 74248239 + 0 NA intron (ENSMUSG00000044976.17, intron 18 of 19) protein_coding-intron (ENSMUSG00000044976.17, intron 18 of 19) -114465 ENSMUSG00000084725.2 ENSMUSG00000084725 ENSMUST00000122776 Gm24141 snRNA Interval_51239 chr14 25476089 25477119 + 0 NA intron (ENSMUSG00000007817.15, intron 1 of 23) protein_coding-intron (ENSMUSG00000007817.15, intron 1 of 23) -3450 ENSMUSG00000114539.1 ENSMUSG00000114539 ENSMUST00000224666 Gm47921 sense_intronic Interval_51930 chr14 34035254 34035507 + 0 NA intron (ENSMUSG00000072624.3, intron 5 of 15) protein_coding-intron (ENSMUSG00000072624.3, intron 5 of 15) -5658 ENSMUSG00000072624.3 ENSMUSG00000072624 ENSMUST00000100719 Gm5460 protein_coding Interval_174303 chrX 144287895 144288101 + 0 NA exon (ENSMUSG00000083200.1, exon 1 of 1) processed_pseudogene-exon (ENSMUSG00000083200.1, exon 1 of 1) 335 ENSMUSG00000083200.1 ENSMUSG00000083200 ENSMUST00000120163 Gm15066 processed_pseudogene Interval_14918 chr10 41088817 41089022 + 0 NA intron (ENSMUSG00000111576.1, intron 3 of 7) lincRNA-intron (ENSMUSG00000111576.1, intron 3 of 7) 13551 ENSMUSG00000111576.1 ENSMUSG00000111576 ENSMUST00000213704 Gm32284 lincRNA Interval_53049 chr14 53893513 53894004 + 0 NA Intergenic Intergenic 12146 ENSMUSG00000076864.9 ENSMUSG00000076864 ENSMUST00000187163 Trdv1 TR_V_gene Interval_3505 chr1 59142975 59143296 + 0 NA intron (ENSMUSG00000079550.9, intron 11 of 21) protein_coding-intron (ENSMUSG00000079550.9, intron 12 of 21) -7912 ENSMUSG00000101586.1 ENSMUSG00000101586 ENSMUST00000190598 Gm29017 antisense Interval_111695 chr4 26109236 26110065 + 0 NA Intergenic Intergenic 169285 ENSMUSG00000088547.1 ENSMUSG00000088547 ENSMUST00000157922 Gm24965 snRNA Interval_136241 chr6 52240046 52241566 + 0 NA promoter-TSS (ENSMUSG00000000938.11) protein_coding-promoter-TSS (ENSMUSG00000000938.11) -11 ENSMUSG00000000938.11 ENSMUSG00000000938 ENSMUST00000142611 Hoxa10 protein_coding Interval_69397 chr16 92680693 92681574 + 0 NA intron (ENSMUSG00000022952.17, intron 2 of 5) protein_coding-intron (ENSMUSG00000022952.17, intron 4 of 7) 68319 ENSMUSG00000097139.3 ENSMUSG00000097139 ENSMUST00000180989 Gm26626 antisense Interval_112487 chr4 41545679 41546303 + 0 NA intron (ENSMUSG00000028439.14, intron 1 of 5) protein_coding-intron (ENSMUSG00000028439.14, intron 1 of 5) 23547 ENSMUSG00000028439.14 ENSMUSG00000028439 ENSMUST00000146276 Fam219a protein_coding Interval_148716 chr7 84528281 84529725 + 0 NA promoter-TSS (ENSMUSG00000097789.2) protein_coding-promoter-TSS (ENSMUSG00000097789.2) -135 ENSMUSG00000097789.2 ENSMUSG00000097789 ENSMUST00000208409 Gm2115 protein_coding Interval_89184 chr2 17917386 17917987 + 0 NA Intergenic Intergenic 79272 ENSMUSG00000062651.4 ENSMUSG00000062651 ENSMUST00000105001 H2al2a protein_coding Interval_47221 chr13 78202794 78204217 + 0 NA intron (ENSMUSG00000087143.9, intron 1 of 1) antisense-intron (ENSMUSG00000087143.9, intron 1 of 2) 718 ENSMUSG00000087143.9 ENSMUSG00000087143 ENSMUST00000183171 A830082K12Rik antisense Interval_66240 chr16 32538082 32539360 + 0 NA intron (ENSMUSG00000052363.8, intron 2 of 3) protein_coding-intron (ENSMUSG00000052363.8, intron 2 of 3) -13021 ENSMUSG00000116957.1 ENSMUSG00000116957 ENSMUST00000232103 Gm34680 lincRNA Interval_15834 chr10 57784753 57784973 + 0 NA promoter-TSS (ENSMUSG00000019874.11) protein_coding-promoter-TSS (ENSMUSG00000019874.11) -60 ENSMUSG00000019874.11 ENSMUSG00000019874 ENSMUST00000165013 Fabp7 protein_coding Interval_97083 chr2 131110151 131111064 + 0 NA Intergenic Intergenic -16887 ENSMUSG00000074793.10 ENSMUSG00000074793 ENSMUST00000127862 Hspa12b protein_coding Interval_92783 chr2 65418513 65418898 + 0 NA Intergenic Intergenic -42423 ENSMUSG00000088197.1 ENSMUSG00000088197 ENSMUST00000157572 Gm24138 snoRNA Interval_173816 chrX 104861414 104862483 + 0 NA Intergenic Intergenic -4681 ENSMUSG00000031224.6 ENSMUSG00000031224 ENSMUST00000033575 Magee2 protein_coding Interval_155283 chr8 30711216 30712118 + 0 NA Intergenic Intergenic 143274 ENSMUSG00000097044.1 ENSMUSG00000097044 ENSMUST00000180571 4933433F19Rik lincRNA Interval_91198 chr2 35864098 35864351 + 0 NA intron (ENSMUSG00000026885.13, intron 6 of 9) protein_coding-intron (ENSMUSG00000026885.13, intron 6 of 9) 20029 ENSMUSG00000106994.1 ENSMUSG00000106994 ENSMUST00000202084 Gm10829 TEC Interval_13310 chr10 14533103 14533390 + 0 NA exon (ENSMUSG00000039116.7, exon 2 of 2) protein_coding-exon (ENSMUSG00000039116.7, exon 2 of 2) 10168 ENSMUSG00000071532.6 ENSMUSG00000071532 ENSMUST00000096020 Gm10335 processed_pseudogene Interval_31283 chr11 99322824 99323240 + 0 NA promoter-TSS (ENSMUSG00000035831.2) protein_coding-promoter-TSS (ENSMUSG00000035831.2) -81 ENSMUSG00000035831.2 ENSMUSG00000035831 ENSMUST00000038004 Krt25 protein_coding Interval_39929 chr12 99861378 99861670 + 0 NA intron (ENSMUSG00000021176.6, intron 4 of 6) protein_coding-intron (ENSMUSG00000021176.6, intron 3 of 5) 22888 ENSMUSG00000021176.6 ENSMUSG00000021176 ENSMUST00000221197 Efcab11 protein_coding Interval_63720 chr15 103020994 103021214 + 0 NA intron (ENSMUSG00000075394.4, intron 1 of 3) protein_coding-intron (ENSMUSG00000075394.4, intron 1 of 3) 2170 ENSMUSG00000075394.4 ENSMUSG00000075394 ENSMUST00000100164 Hoxc4 protein_coding Interval_97255 chr2 132684679 132685396 + 0 NA Intergenic Intergenic -5120 ENSMUSG00000044991.10 ENSMUSG00000044991 ENSMUST00000141460 Shld1 protein_coding Interval_95747 chr2 115706444 115707507 + 0 NA intron (ENSMUSG00000040282.13, intron 10 of 10) protein_coding-intron (ENSMUSG00000040282.13, intron 10 of 10) 68250 ENSMUSG00000088606.1 ENSMUSG00000088606 ENSMUST00000157981 Mir1951 miRNA Interval_11036 chr1 178611796 178612505 + 0 NA intron (ENSMUSG00000026494.12, intron 2 of 3) protein_coding-intron (ENSMUSG00000026494.12, intron 2 of 14) -24755 ENSMUSG00000064967.1 ENSMUSG00000064967 ENSMUST00000083033 Gm24405 snRNA Interval_165441 chr9 47935378 47936389 + 0 NA Intergenic Intergenic 12278 ENSMUSG00000111668.1 ENSMUSG00000111668 ENSMUST00000215015 Gm47213 processed_pseudogene Interval_130191 chr5 124834862 124836361 + 0 NA TTS (ENSMUSG00000037979.13) protein_coding-TTS (ENSMUSG00000037979.13) 15972 ENSMUSG00000037979.13 ENSMUSG00000037979 ENSMUST00000143268 Ccdc92 protein_coding Interval_65174 chr16 20350271 20351880 + 0 NA intron (ENSMUSG00000022822.16, intron 3 of 3) protein_coding-intron (ENSMUSG00000022822.16, intron 25 of 29) -34325 ENSMUSG00000022818.13 ENSMUSG00000022818 ENSMUST00000182669 Cyp2ab1 protein_coding Interval_130720 chr5 129979823 129980270 + 0 NA intron (ENSMUSG00000066735.8, intron 2 of 2) protein_coding-intron (ENSMUSG00000066735.8, intron 2 of 2) 3052 ENSMUSG00000066735.8 ENSMUSG00000066735 ENSMUST00000202486 Vkorc1l1 protein_coding Interval_8435 chr1 139316623 139317322 + 0 NA intron (ENSMUSG00000063681.14, intron 1 of 2) protein_coding-intron (ENSMUSG00000063681.14, intron 4 of 11) 11276 ENSMUSG00000063681.14 ENSMUSG00000063681 ENSMUST00000197035 Crb1 protein_coding Interval_114482 chr4 80873022 80875802 + 0 NA Intergenic Intergenic 27824 ENSMUSG00000005994.14 ENSMUSG00000005994 ENSMUST00000133932 Tyrp1 protein_coding Interval_161806 chr8 122925684 122927184 + 0 NA intron (ENSMUSG00000035569.17, intron 1 of 2) protein_coding-intron (ENSMUSG00000035569.17, intron 2 of 12) 55885 ENSMUSG00000110440.1 ENSMUSG00000110440 ENSMUST00000212728 Gm45894 antisense Interval_22020 chr11 5818960 5819848 + 0 NA promoter-TSS (ENSMUSG00000080904.1) processed_pseudogene-promoter-TSS (ENSMUSG00000080904.1) -821 ENSMUSG00000080904.1 ENSMUSG00000080904 ENSMUST00000119907 Gm11966 processed_pseudogene Interval_159183 chr8 91445610 91446205 + 0 NA intron (ENSMUSG00000055932.15, intron 4 of 6) protein_coding-intron (ENSMUSG00000055932.15, intron 4 of 8) -4399 ENSMUSG00000110079.1 ENSMUSG00000110079 ENSMUST00000211232 Gm45292 TEC Interval_30095 chr11 89145306 89145817 + 0 NA Intergenic Intergenic -8795 ENSMUSG00000089485.1 ENSMUSG00000089485 ENSMUST00000158860 Gm24734 misc_RNA Interval_39851 chr12 99063756 99064582 + 0 NA promoter-TSS (ENSMUSG00000114089.1) lincRNA-promoter-TSS (ENSMUSG00000114089.1) -711 ENSMUSG00000114089.1 ENSMUSG00000114089 ENSMUST00000220675 Gm47116 lincRNA Interval_87830 chr19 56326066 56326358 + 0 NA intron (ENSMUSG00000049134.15, intron 37 of 40) protein_coding-intron (ENSMUSG00000049134.15, intron 37 of 40) -38050 ENSMUSG00000090990.1 ENSMUSG00000090990 ENSMUST00000163160 Gm17197 antisense Interval_98674 chr2 154184298 154184588 + 0 NA Intergenic Intergenic -6380 ENSMUSG00000027485.15 ENSMUSG00000027485 ENSMUST00000028987 Bpifb1 protein_coding Interval_32102 chr11 105248435 105248929 + 0 NA intron (ENSMUSG00000020694.17, intron 9 of 17) protein_coding-intron (ENSMUSG00000020694.17, intron 10 of 20) 39829 ENSMUSG00000020694.17 ENSMUSG00000020694 ENSMUST00000146910 Tlk2 protein_coding Interval_153105 chr7 141391590 141392843 + 0 NA promoter-TSS (ENSMUSG00000025503.5) protein_coding-promoter-TSS (ENSMUSG00000025503.5) -5592 ENSMUSG00000077716.1 ENSMUSG00000077716 ENSMUST00000104528 Gm25725 snoRNA Interval_160119 chr8 106572555 106574341 + 0 NA promoter-TSS (ENSMUSG00000060019.6) processed_pseudogene-promoter-TSS (ENSMUSG00000060019.6) -98 ENSMUSG00000060019.6 ENSMUSG00000060019 ENSMUST00000073722 Gm10073 processed_pseudogene Interval_28711 chr11 77872488 77872976 + 0 NA Intergenic Intergenic 11812 ENSMUSG00000017453.4 ENSMUSG00000017453 ENSMUST00000155401 Pipox protein_coding Interval_19699 chr10 108182206 108182853 + 0 NA intron (ENSMUSG00000019907.10, intron 1 of 24) protein_coding-intron (ENSMUSG00000019907.10, intron 1 of 25) -40097 ENSMUSG00000112401.1 ENSMUSG00000112401 ENSMUST00000219675 Gm47999 processed_pseudogene Interval_133479 chr6 5506083 5506398 + 0 NA Intergenic Intergenic -9979 ENSMUSG00000019577.6 ENSMUSG00000019577 ENSMUST00000134068 Pdk4 protein_coding Interval_162467 chr8 129146247 129147763 + 0 NA intron (ENSMUSG00000056018.14, intron 2 of 6) protein_coding-intron (ENSMUSG00000056018.14, intron 10 of 14) 2889 ENSMUSG00000056018.14 ENSMUSG00000056018 ENSMUST00000189055 Ccdc7b protein_coding Interval_56671 chr14 121291165 121291398 + 0 NA intron (ENSMUSG00000063410.8, intron 10 of 10) protein_coding-intron (ENSMUSG00000063410.8, intron 10 of 10) 42575 ENSMUSG00000085133.2 ENSMUSG00000085133 ENSMUST00000130256 B930095G15Rik sense_intronic Interval_85917 chr19 33112478 33112873 + 0 NA Intergenic Intergenic -9972 ENSMUSG00000118196.1 ENSMUSG00000118196 ENSMUST00000237929 Gm29946 lincRNA Interval_174279 chrX 143064026 143064665 + 0 NA Intergenic Intergenic -35249 ENSMUSG00000085584.3 ENSMUSG00000085584 ENSMUST00000165829 Rtl9 protein_coding Interval_113853 chr4 59370030 59370680 + 0 NA intron (ENSMUSG00000038578.15, intron 8 of 16) protein_coding-intron (ENSMUSG00000038578.15, intron 8 of 16) -1489 ENSMUSG00000083979.1 ENSMUSG00000083979 ENSMUST00000117967 Gm12527 processed_pseudogene Interval_150064 chr7 105531697 105532515 + 0 NA Intergenic Intergenic -23585 ENSMUSG00000037049.9 ENSMUSG00000037049 ENSMUST00000211307 Smpd1 protein_coding Interval_97657 chr2 142292912 142293444 + 0 NA intron (ENSMUSG00000068205.14, intron 8 of 13) protein_coding-intron (ENSMUSG00000068205.14, intron 13 of 17) -88810 ENSMUSG00000089318.1 ENSMUSG00000089318 ENSMUST00000158693 Gm23179 misc_RNA Interval_124149 chr5 38671649 38672084 + 0 NA exon (ENSMUSG00000046572.10, exon 4 of 4) protein_coding-exon (ENSMUSG00000046572.10, exon 4 of 4) 12960 ENSMUSG00000046572.10 ENSMUSG00000046572 ENSMUST00000178760 Zfp518b protein_coding Interval_154986 chr8 25506144 25506910 + 0 NA Intergenic Intergenic -18942 ENSMUSG00000110063.1 ENSMUSG00000110063 ENSMUST00000211266 Gm31045 lincRNA Interval_77534 chr17 90963026 90963414 + 0 NA intron (ENSMUSG00000024109.18, intron 1 of 12) protein_coding-intron (ENSMUSG00000024109.18, intron 4 of 20) 102051 ENSMUSG00000090160.1 ENSMUSG00000090160 ENSMUST00000162121 4930480K15Rik antisense Interval_19011 chr10 93782930 93783894 + 0 NA Intergenic Intergenic 4752 ENSMUSG00000090610.3 ENSMUSG00000090610 ENSMUST00000170703 Gm3571 processed_pseudogene Interval_24242 chr11 31744070 31746056 + 0 NA Intergenic Intergenic 46415 ENSMUSG00000103635.1 ENSMUSG00000103635 ENSMUST00000192490 Gm38061 TEC Interval_108903 chr3 133149105 133150144 + 0 NA exon (ENSMUSG00000040969.14, exon 6 of 14) protein_coding-exon (ENSMUSG00000040969.14, exon 6 of 14) 49237 ENSMUSG00000028016.9 ENSMUSG00000028016 ENSMUST00000160669 Ints12 protein_coding Interval_49338 chr13 111322968 111323308 + 0 NA Intergenic Intergenic 38537 ENSMUSG00000081277.1 ENSMUSG00000081277 ENSMUST00000119271 Gm15285 processed_pseudogene Interval_14848 chr10 40479361 40480056 + 0 NA exon (ENSMUSG00000038481.13, exon 13 of 13) protein_coding-exon (ENSMUSG00000038481.13, exon 13 of 13) -69184 ENSMUSG00000111251.1 ENSMUSG00000111251 ENSMUST00000214826 Gm18671 processed_pseudogene Interval_161894 chr8 123503849 123505033 + 0 NA TTS (ENSMUSG00000031967.15) protein_coding-TTS (ENSMUSG00000031967.15) 10949 ENSMUSG00000031970.16 ENSMUSG00000031970 ENSMUST00000176155 Dbndd1 protein_coding Interval_74995 chr17 59223915 59224717 + 0 NA Intergenic Intergenic 1527 ENSMUSG00000077629.1 ENSMUSG00000077629 ENSMUST00000104441 Gm23769 snoRNA Interval_111327 chr4 18946616 18946947 + 0 NA intron (ENSMUSG00000073991.4, intron 4 of 9) protein_coding-intron (ENSMUSG00000073991.4, intron 4 of 9) -17783 ENSMUSG00000083005.1 ENSMUSG00000083005 ENSMUST00000118014 Gm12392 processed_pseudogene Interval_75256 chr17 65498662 65498906 + 0 NA intron (ENSMUSG00000045036.15, intron 1 of 12) protein_coding-intron (ENSMUSG00000045036.15, intron 4 of 15) -10584 ENSMUSG00000092908.1 ENSMUSG00000092908 ENSMUST00000175167 Gm25731 miRNA Interval_142002 chr6 136486138 136487649 + 0 NA exon (ENSMUSG00000091408.3, exon 1 of 1) processed_pseudogene-exon (ENSMUSG00000091408.3, exon 1 of 1) 293 ENSMUSG00000091408.3 ENSMUSG00000091408 ENSMUST00000178117 Gm6728 processed_pseudogene Interval_38822 chr12 82917863 82918250 + 0 NA intron (ENSMUSG00000021219.16, intron 2 of 16) protein_coding-intron (ENSMUSG00000021219.16, intron 1 of 14) 21099 ENSMUSG00000100890.1 ENSMUSG00000100890 ENSMUST00000187123 1700085C21Rik antisense Interval_61965 chr15 85543506 85544466 + 0 NA intron (ENSMUSG00000022382.15, intron 2 of 3) protein_coding-intron (ENSMUSG00000022382.15, intron 2 of 3) 23036 ENSMUSG00000022382.15 ENSMUSG00000022382 ENSMUST00000230299 Wnt7b protein_coding Interval_131888 chr5 140606399 140607709 + 0 NA promoter-TSS (ENSMUSG00000029570.5) protein_coding-promoter-TSS (ENSMUSG00000029570.5) -503 ENSMUSG00000105699.1 ENSMUSG00000105699 ENSMUST00000200523 Gm43703 lincRNA Interval_100902 chr2 173253765 173253996 + 0 NA intron (ENSMUSG00000038400.15, intron 1 of 3) protein_coding-intron (ENSMUSG00000038400.15, intron 1 of 3) 22309 ENSMUSG00000038400.15 ENSMUSG00000038400 ENSMUST00000124124 Pmepa1 protein_coding Interval_83834 chr19 4976617 4977899 + 0 NA Intergenic Intergenic 12646 ENSMUSG00000045903.9 ENSMUSG00000045903 ENSMUST00000237881 Npas4 protein_coding Interval_173968 chrX 118135112 118135707 + 0 NA Intergenic Intergenic -14037 ENSMUSG00000081268.1 ENSMUSG00000081268 ENSMUST00000117853 Gm14909 processed_pseudogene Interval_50552 chr14 15034636 15035087 + 0 NA intron (ENSMUSG00000114538.1, intron 7 of 10) lincRNA-intron (ENSMUSG00000114538.1, intron 7 of 10) 7308 ENSMUSG00000114542.1 ENSMUSG00000114542 ENSMUST00000224124 Gm18142 processed_pseudogene Interval_152207 chr7 130649361 130649585 + 0 NA intron (ENSMUSG00000030852.18, intron 1 of 15) protein_coding-intron (ENSMUSG00000030852.18, intron 2 of 20) 4919 ENSMUSG00000109225.1 ENSMUSG00000109225 ENSMUST00000207466 4930513N20Rik TEC Interval_36620 chr12 51558817 51559219 + 0 NA Intergenic Intergenic -34361 ENSMUSG00000020953.17 ENSMUSG00000020953 ENSMUST00000220173 Coch protein_coding Interval_168272 chr9 78359668 78360806 + 0 NA Intergenic Intergenic 7940 ENSMUSG00000060461.5 ENSMUSG00000060461 ENSMUST00000071991 Dppa5a protein_coding Interval_38309 chr12 77039139 77040260 + 0 NA exon (ENSMUSG00000112030.1, exon 2 of 2) lincRNA-exon (ENSMUSG00000112030.1, exon 2 of 2) 2502 ENSMUSG00000112030.1 ENSMUSG00000112030 ENSMUST00000219319 Gm35189 lincRNA Interval_26496 chr11 58156421 58156859 + 0 NA intron (ENSMUSG00000037275.14, intron 7 of 27) protein_coding-intron (ENSMUSG00000037275.14, intron 7 of 27) 11899 ENSMUSG00000037275.14 ENSMUSG00000037275 ENSMUST00000134953 Gemin5 protein_coding Interval_49199 chr13 109372044 109373239 + 0 NA intron (ENSMUSG00000021699.17, intron 1 of 14) protein_coding-intron (ENSMUSG00000021699.17, intron 1 of 14) 47897 ENSMUSG00000076946.2 ENSMUSG00000076946 ENSMUST00000103758 Mir582 miRNA Interval_32669 chr11 109538216 109538421 + 0 NA intron (ENSMUSG00000020604.13, intron 8 of 11) protein_coding-intron (ENSMUSG00000020604.13, intron 10 of 13) -38494 ENSMUSG00000088106.1 ENSMUSG00000088106 ENSMUST00000157481 Gm22378 snRNA Interval_3220 chr1 54979105 54979777 + 0 NA Intergenic Intergenic 47953 ENSMUSG00000025982.13 ENSMUSG00000025982 ENSMUST00000188419 Sf3b1 protein_coding Interval_55391 chr14 86465895 86466080 + 0 NA Intergenic Intergenic 37588 ENSMUSG00000115401.1 ENSMUSG00000115401 ENSMUST00000226392 Gm49157 processed_pseudogene Interval_44624 chr13 46788243 46788722 + 0 NA promoter-TSS (ENSMUSG00000021375.11) protein_coding-promoter-TSS (ENSMUSG00000021375.11) 20575 ENSMUSG00000021375.11 ENSMUSG00000021375 ENSMUST00000224923 Kif13a protein_coding Interval_23231 chr11 20719400 20719875 + 0 NA intron (ENSMUSG00000049659.15, intron 2 of 7) protein_coding-intron (ENSMUSG00000049659.15, intron 2 of 8) -9783 ENSMUSG00000084252.1 ENSMUSG00000084252 ENSMUST00000120008 Gm12036 processed_pseudogene Interval_89378 chr2 20188791 20189630 + 0 NA intron (ENSMUSG00000036617.17, intron 2 of 7) protein_coding-intron (ENSMUSG00000036617.17, intron 2 of 7) 46854 ENSMUSG00000081128.1 ENSMUSG00000081128 ENSMUST00000120816 Gm13328 processed_pseudogene Interval_28603 chr11 77085204 77087355 + 0 NA Intergenic Intergenic -7844 ENSMUSG00000037958.13 ENSMUSG00000037958 ENSMUST00000134685 Nsrp1 protein_coding Interval_157641 chr8 71966570 71967624 + 0 NA TTS (ENSMUSG00000052446.17) protein_coding-TTS (ENSMUSG00000052446.17) 13650 ENSMUSG00000052446.17 ENSMUSG00000052446 ENSMUST00000151168 Zfp961 protein_coding Interval_5568 chr1 89870244 89871476 + 0 NA intron (ENSMUSG00000055013.16, intron 15 of 16) protein_coding-intron (ENSMUSG00000055013.16, intron 16 of 17) 45379 ENSMUSG00000103252.1 ENSMUSG00000103252 ENSMUST00000193177 Gm37521 TEC Interval_62851 chr15 97412615 97412868 + 0 NA Intergenic Intergenic 51539 ENSMUSG00000044250.8 ENSMUSG00000044250 ENSMUST00000226495 Pced1b protein_coding Interval_5658 chr1 90611822 90612630 + 0 NA TTS (ENSMUSG00000034432.11) protein_coding-TTS (ENSMUSG00000034432.11) 8750 ENSMUSG00000034432.11 ENSMUSG00000034432 ENSMUST00000186882 Cops8 protein_coding Interval_94720 chr2 93685000 93685405 + 0 NA intron (ENSMUSG00000027198.16, intron 11 of 11) protein_coding-intron (ENSMUSG00000027198.16, intron 11 of 11) 42814 ENSMUSG00000040310.12 ENSMUSG00000040310 ENSMUST00000111254 Alx4 protein_coding Interval_37024 chr12 56533036 56537111 + 0 NA promoter-TSS (ENSMUSG00000001496.15) protein_coding-promoter-TSS (ENSMUSG00000001496.15) 33 ENSMUSG00000001496.15 ENSMUSG00000001496 ENSMUST00000001536 Nkx2-1 protein_coding Interval_25315 chr11 46260488 46261018 + 0 NA intron (ENSMUSG00000020340.16, intron 5 of 21) protein_coding-intron (ENSMUSG00000020340.16, intron 15 of 30) -16559 ENSMUSG00000081078.1 ENSMUSG00000081078 ENSMUST00000117362 Gm12568 processed_pseudogene Interval_145837 chr7 39963878 39964221 + 0 NA intron (ENSMUSG00000109083.2, intron 1 of 7) lincRNA-intron (ENSMUSG00000109083.2, intron 1 of 4) 14184 ENSMUSG00000109083.2 ENSMUSG00000109083 ENSMUST00000208803 Gm44992 lincRNA Interval_123276 chr5 31068158 31069045 + 0 NA TTS (ENSMUSG00000013629.16) protein_coding-TTS (ENSMUSG00000013629.16) -5516 ENSMUSG00000013629.16 ENSMUSG00000013629 ENSMUST00000200917 Cad protein_coding Interval_21210 chr10 127232799 127233532 + 0 NA intron (ENSMUSG00000074657.5, intron 23 of 27) protein_coding-intron (ENSMUSG00000074657.5, intron 23 of 28) -21580 ENSMUSG00000025417.8 ENSMUSG00000025417 ENSMUST00000218386 Pip4k2c protein_coding Interval_96066 chr2 119557954 119558743 + 0 NA intron (ENSMUSG00000014077.13, intron 1 of 3) protein_coding-intron (ENSMUSG00000014077.13, intron 1 of 6) 10536 ENSMUSG00000014077.13 ENSMUSG00000014077 ENSMUST00000137585 Chp1 protein_coding Interval_143746 chr7 16028564 16029433 + 0 NA intron (ENSMUSG00000070808.4, intron 1 of 14) protein_coding-intron (ENSMUSG00000070808.4, intron 1 of 14) 18923 ENSMUSG00000070808.4 ENSMUSG00000070808 ENSMUST00000209251 Bicra protein_coding Interval_79978 chr18 36403146 36404702 + 0 NA TTS (ENSMUSG00000046727.13) protein_coding-TTS (ENSMUSG00000046727.13) 50600 ENSMUSG00000024346.6 ENSMUSG00000024346 ENSMUST00000237499 Pfdn1 protein_coding Interval_111521 chr4 22396584 22397265 + 0 NA TTS (ENSMUSG00000077561.1) snoRNA-TTS (ENSMUSG00000077561.1) 354 ENSMUSG00000077561.1 ENSMUSG00000077561 ENSMUST00000104373 Gm24607 snoRNA Interval_122538 chr5 23657841 23658544 + 0 NA intron (ENSMUSG00000062604.11, intron 1 of 3) protein_coding-intron (ENSMUSG00000062604.11, intron 1 of 3) 16189 ENSMUSG00000088359.1 ENSMUSG00000088359 ENSMUST00000157734 Gm24009 rRNA Interval_125422 chr5 66988167 66988549 + 0 NA TTS (ENSMUSG00000086964.1) antisense-TTS (ENSMUSG00000086964.1) -2717 ENSMUSG00000085839.1 ENSMUSG00000085839 ENSMUST00000129485 Gm15949 antisense Interval_57574 chr15 12479154 12480516 + 0 NA intron (ENSMUSG00000022197.16, intron 3 of 4) protein_coding-intron (ENSMUSG00000022197.16, intron 1 of 23) -67455 ENSMUSG00000022197.16 ENSMUSG00000022197 ENSMUST00000189746 Pdzd2 protein_coding Interval_31151 chr11 98469793 98470708 + 0 NA intron (ENSMUSG00000018168.8, intron 2 of 2) protein_coding-intron (ENSMUSG00000018168.8, intron 7 of 7) 3558 ENSMUSG00000084621.1 ENSMUSG00000084621 ENSMUST00000122672 Gm25106 snRNA Interval_159543 chr8 95346489 95347060 + 0 NA TTS (ENSMUSG00000031792.15) protein_coding-TTS (ENSMUSG00000031792.15) 14471 ENSMUSG00000031792.15 ENSMUSG00000031792 ENSMUST00000151223 Usb1 protein_coding Interval_173604 chrX 100767200 100768411 + 0 NA promoter-TSS (ENSMUSG00000000881.12) protein_coding-promoter-TSS (ENSMUSG00000000881.12) -9480 ENSMUSG00000000881.12 ENSMUSG00000000881 ENSMUST00000146772 Dlg3 protein_coding Interval_59123 chr15 44381259 44381561 + 0 NA intron (ENSMUSG00000038736.10, intron 8 of 9) protein_coding-intron (ENSMUSG00000038736.10, intron 8 of 9) 17325 ENSMUSG00000077181.1 ENSMUSG00000077181 ENSMUST00000103993 Gm25093 snoRNA Interval_138612 chr6 90434934 90435608 + 0 NA Intergenic Intergenic -6858 ENSMUSG00000048794.14 ENSMUSG00000048794 ENSMUST00000128124 Cfap100 protein_coding Interval_77730 chr17 94738068 94738258 + 0 NA intron (ENSMUSG00000055660.9, intron 5 of 8) protein_coding-intron (ENSMUSG00000055660.9, intron 4 of 7) 11729 ENSMUSG00000055660.9 ENSMUSG00000055660 ENSMUST00000234593 Mettl4 protein_coding Interval_21258 chr10 127521927 127522550 + 0 NA intron (ENSMUSG00000025403.5, intron 1 of 1) protein_coding-intron (ENSMUSG00000025403.5, intron 1 of 11) -3462 ENSMUSG00000025403.5 ENSMUSG00000025403 ENSMUST00000217682 Shmt2 protein_coding Interval_164188 chr9 32346058 32346391 + 0 NA Intergenic Intergenic -1987 ENSMUSG00000032034.6 ENSMUSG00000032034 ENSMUST00000214223 Kcnj5 protein_coding Interval_22121 chr11 6464780 6466429 + 0 NA Intergenic Intergenic 6673 ENSMUSG00000092885.1 ENSMUSG00000092885 ENSMUST00000175144 Gm22123 miRNA Interval_83544 chr18 89070703 89072674 + 0 NA intron (ENSMUSG00000023066.10, intron 3 of 19) protein_coding-intron (ENSMUSG00000023066.10, intron 32 of 48) -29940 ENSMUSG00000023066.10 ENSMUSG00000023066 ENSMUST00000237196 Rttn protein_coding Interval_9325 chr1 156250369 156251715 + 0 NA Intergenic Intergenic 12486 ENSMUSG00000060985.15 ENSMUSG00000060985 ENSMUST00000141760 Tdrd5 protein_coding Interval_173701 chrX 102177906 102178898 + 0 NA exon (ENSMUSG00000084142.1, exon 1 of 2) processed_pseudogene-exon (ENSMUSG00000084142.1, exon 1 of 2) 255 ENSMUSG00000084142.1 ENSMUSG00000084142 ENSMUST00000119371 Gm9103 processed_pseudogene Interval_141797 chr6 134582256 134582754 + 0 NA Intergenic Intergenic 25176 ENSMUSG00000107728.1 ENSMUSG00000107728 ENSMUST00000204630 Gm38910 lincRNA Interval_119364 chr4 137223871 137224047 + 0 NA promoter-TSS (ENSMUSG00000082149.1) processed_pseudogene-promoter-TSS (ENSMUSG00000082149.1) -637 ENSMUSG00000082149.1 ENSMUSG00000082149 ENSMUST00000119286 Gm13002 processed_pseudogene Interval_143450 chr7 6879402 6880703 + 0 NA intron (ENSMUSG00000051527.11, intron 2 of 7) protein_coding-intron (ENSMUSG00000051527.11, intron 2 of 7) -10986 ENSMUSG00000109082.1 ENSMUSG00000109082 ENSMUST00000207166 Gm44586 TEC Interval_162483 chr9 3071281 3071678 + 0 NA Intergenic Intergenic -32736 ENSMUSG00000106183.1 ENSMUSG00000106183 ENSMUST00000195989 Mir101c miRNA Interval_149879 chr7 102182222 102183260 + 0 NA intron (ENSMUSG00000063550.8, intron 1 of 6) protein_coding-intron (ENSMUSG00000063550.8, intron 9 of 22) 824 ENSMUSG00000063550.8 ENSMUSG00000063550 ENSMUST00000211375 Nup98 protein_coding Interval_88949 chr2 13385788 13386464 + 0 NA intron (ENSMUSG00000026726.10, intron 29 of 66) protein_coding-intron (ENSMUSG00000026726.10, intron 29 of 66) 69501 ENSMUSG00000026726.10 ENSMUSG00000026726 ENSMUST00000148506 Cubn protein_coding Interval_46920 chr13 73405663 73406730 + 0 NA Intergenic Intergenic -58812 ENSMUSG00000113346.2 ENSMUSG00000113346 ENSMUST00000223470 Eprn lincRNA Interval_135931 chr6 48851815 48852465 + 0 NA intron (ENSMUSG00000107597.1, intron 2 of 3) processed_transcript-intron (ENSMUSG00000107597.1, intron 2 of 3) -8189 ENSMUSG00000108084.1 ENSMUSG00000108084 ENSMUST00000101425 Gm7932 lincRNA Interval_165226 chr9 45504916 45505857 + 0 NA intron (ENSMUSG00000032087.11, intron 3 of 32) protein_coding-intron (ENSMUSG00000032087.11, intron 3 of 32) -73656 ENSMUSG00000097074.2 ENSMUSG00000097074 ENSMUST00000215652 4833428L15Rik antisense Interval_165575 chr9 49715115 49715729 + 0 NA intron (ENSMUSG00000039542.16, intron 1 of 1) protein_coding-intron (ENSMUSG00000039542.16, intron 1 of 15) 83500 ENSMUSG00000039542.16 ENSMUSG00000039542 ENSMUST00000217121 Ncam1 protein_coding Interval_36030 chr12 33434625 33435049 + 0 NA intron (ENSMUSG00000020561.8, intron 2 of 2) protein_coding-intron (ENSMUSG00000020561.8, intron 2 of 3) 5202 ENSMUSG00000020561.8 ENSMUSG00000020561 ENSMUST00000219758 Twistnb protein_coding Interval_16385 chr10 62664635 62665510 + 0 NA exon (ENSMUSG00000036923.12, exon 3 of 4) protein_coding-exon (ENSMUSG00000036923.12, exon 3 of 4) -4731 ENSMUSG00000112901.1 ENSMUSG00000112901 ENSMUST00000218980 Gm18514 processed_pseudogene Interval_116263 chr4 109131093 109132922 + 0 NA intron (ENSMUSG00000028559.17, intron 4 of 23) protein_coding-intron (ENSMUSG00000028559.17, intron 4 of 23) 29190 ENSMUSG00000088014.1 ENSMUSG00000088014 ENSMUST00000157389 Gm23743 misc_RNA Interval_81212 chr18 56523257 56524264 + 0 NA TTS (ENSMUSG00000053644.13) protein_coding-TTS (ENSMUSG00000053644.13) 5520 ENSMUSG00000118186.1 ENSMUSG00000118186 ENSMUST00000235656 Gm8642 processed_pseudogene Interval_94616 chr2 92682208 92682683 + 0 NA Intergenic Intergenic -59785 ENSMUSG00000085976.1 ENSMUSG00000085976 ENSMUST00000152230 Gm13816 lincRNA Interval_114861 chr4 86489070 86489322 + 0 NA intron (ENSMUSG00000028492.13, intron 1 of 2) protein_coding-intron (ENSMUSG00000028492.13, intron 1 of 3) -19956 ENSMUSG00000077597.1 ENSMUSG00000077597 ENSMUST00000104409 Gm26017 snRNA Interval_17436 chr10 76686092 76686286 + 0 NA exon (ENSMUSG00000112721.1, exon 1 of 1) lincRNA-exon (ENSMUSG00000112721.1, exon 1 of 1) 1757 ENSMUSG00000112721.1 ENSMUSG00000112721 ENSMUST00000218472 Gm35608 lincRNA Interval_91825 chr2 49904164 49904635 + 0 NA intron (ENSMUSG00000026765.12, intron 4 of 9) protein_coding-intron (ENSMUSG00000026765.12, intron 4 of 9) 2481 ENSMUSG00000088825.1 ENSMUSG00000088825 ENSMUST00000158200 Gm25223 misc_RNA Interval_113676 chr4 57488718 57490877 + 0 NA intron (ENSMUSG00000090053.9, intron 1 of 6) protein_coding-intron (ENSMUSG00000090053.9, intron 1 of 6) -32248 ENSMUSG00000081615.1 ENSMUSG00000081615 ENSMUST00000121549 Gm12539 processed_pseudogene Interval_88563 chr2 6167779 6168605 + 0 NA Intergenic Intergenic -25059 ENSMUSG00000087125.1 ENSMUSG00000087125 ENSMUST00000151782 A230108P19Rik antisense Interval_80829 chr18 47750236 47750629 + 0 NA Intergenic Intergenic 17324 ENSMUSG00000118139.1 ENSMUSG00000118139 ENSMUST00000237736 Gm41720 lincRNA Interval_3565 chr1 59623453 59623836 + 0 NA intron (ENSMUSG00000026021.15, intron 2 of 3) protein_coding-intron (ENSMUSG00000047361.16, intron 13 of 19) -2936 ENSMUSG00000089276.1 ENSMUSG00000089276 ENSMUST00000158651 Gm24545 misc_RNA Interval_134208 chr6 22984577 22984932 + 0 NA intron (ENSMUSG00000068748.7, intron 8 of 11) protein_coding-intron (ENSMUSG00000068748.7, intron 8 of 29) 109032 ENSMUSG00000068748.7 ENSMUSG00000068748 ENSMUST00000200769 Ptprz1 protein_coding Interval_68197 chr16 67661221 67662023 + 0 NA Intergenic Intergenic -68396 ENSMUSG00000082823.3 ENSMUSG00000082823 ENSMUST00000119911 Gm15828 processed_pseudogene Interval_142585 chr6 143592425 143592924 + 0 NA TTS (ENSMUSG00000086887.1) lincRNA-TTS (ENSMUSG00000086887.1) -57166 ENSMUSG00000084971.1 ENSMUSG00000084971 ENSMUST00000132321 4930579D09Rik lincRNA Interval_43391 chr13 29983213 29986801 + 0 NA promoter-TSS (ENSMUSG00000016477.18) protein_coding-promoter-TSS (ENSMUSG00000016477.18) -616 ENSMUSG00000016477.18 ENSMUSG00000016477 ENSMUST00000146092 E2f3 protein_coding Interval_128950 chr5 116270172 116270469 + 0 NA intron (ENSMUSG00000043913.14, intron 1 of 5) protein_coding-intron (ENSMUSG00000043913.14, intron 1 of 13) 12659 ENSMUSG00000086055.1 ENSMUSG00000086055 ENSMUST00000126326 Gm13837 antisense Interval_56867 chr14 122577589 122578039 + 0 NA intron (ENSMUSG00000041650.15, intron 4 of 6) protein_coding-intron (ENSMUSG00000041650.15, intron 4 of 23) -4870 ENSMUSG00000041650.15 ENSMUSG00000041650 ENSMUST00000138836 Pcca protein_coding Interval_38947 chr12 84031106 84031938 + 0 NA Intergenic Intergenic -7413 ENSMUSG00000113475.1 ENSMUSG00000113475 ENSMUST00000221229 Gm49366 protein_coding Interval_48671 chr13 101041559 101041739 + 0 NA Intergenic Intergenic -2403 ENSMUSG00000096722.2 ENSMUSG00000096722 ENSMUST00000179479 Hmgb1-ps9 processed_pseudogene Interval_14132 chr10 27968991 27969240 + 0 NA Intergenic Intergenic 32751 ENSMUSG00000064208.6 ENSMUSG00000064208 ENSMUST00000077776 Gm10145 processed_pseudogene Interval_114042 chr4 62695593 62696210 + 0 NA intron (ENSMUSG00000059810.18, intron 5 of 9) protein_coding-intron (ENSMUSG00000059810.18, intron 11 of 15) -10080 ENSMUSG00000085223.1 ENSMUSG00000085223 ENSMUST00000150203 Gm11210 lincRNA Interval_136914 chr6 64389431 64389632 + 0 NA intron (ENSMUSG00000071424.10, intron 11 of 15) protein_coding-intron (ENSMUSG00000071424.10, intron 11 of 15) -24117 ENSMUSG00000064775.1 ENSMUSG00000064775 ENSMUST00000082841 Gm25205 snRNA Interval_148694 chr7 84190483 84190706 + 0 NA intron (ENSMUSG00000097016.2, intron 3 of 3) bidirectional_promoter_lncRNA-intron (ENSMUSG00000097016.2, intron 3 of 3) 19920 ENSMUSG00000109381.1 ENSMUSG00000109381 ENSMUST00000207648 Gm44826 TEC Interval_97550 chr2 139740817 139741361 + 0 NA intron (ENSMUSG00000074766.10, intron 3 of 5) protein_coding-intron (ENSMUSG00000074766.10, intron 3 of 5) 62911 ENSMUSG00000074766.10 ENSMUSG00000074766 ENSMUST00000099307 Ism1 protein_coding Interval_58469 chr15 34905518 34905718 + 0 NA intron (ENSMUSG00000022329.15, intron 10 of 10) protein_coding-intron (ENSMUSG00000022329.15, intron 10 of 10) 54619 ENSMUSG00000022329.15 ENSMUSG00000022329 ENSMUST00000138841 Stk3 protein_coding Interval_111240 chr4 15826723 15827494 + 0 NA Intergenic Intergenic -5738 ENSMUSG00000081026.1 ENSMUSG00000081026 ENSMUST00000121562 Gm11855 processed_pseudogene Interval_21344 chr10 128090783 128091595 + 0 NA promoter-TSS (ENSMUSG00000040054.17) protein_coding-promoter-TSS (ENSMUSG00000040054.17) -393 ENSMUSG00000040054.17 ENSMUSG00000040054 ENSMUST00000219980 Baz2a protein_coding Interval_149421 chr7 98369679 98371714 + 0 NA Intergenic Intergenic -10509 ENSMUSG00000049580.12 ENSMUSG00000049580 ENSMUST00000206770 Tsku protein_coding Interval_35050 chr12 16867220 16868048 + 0 NA Intergenic Intergenic -16753 ENSMUSG00000114018.1 ENSMUSG00000114018 ENSMUST00000221201 Gm36495 lincRNA Interval_92136 chr2 53848302 53848500 + 0 NA Intergenic Intergenic -147446 ENSMUSG00000088628.1 ENSMUSG00000088628 ENSMUST00000158003 Gm23315 snoRNA Interval_7547 chr1 132127908 132128292 + 0 NA intron (ENSMUSG00000026437.11, intron 2 of 16) protein_coding-intron (ENSMUSG00000026437.11, intron 1 of 15) -11404 ENSMUSG00000099874.1 ENSMUSG00000099874 ENSMUST00000187926 Gm29629 antisense Interval_53070 chr14 54223093 54224618 + 0 NA TTS (ENSMUSG00000076928.5) TR_C_gene-TTS (ENSMUSG00000076928.5) 3334 ENSMUSG00000076928.5 ENSMUSG00000076928 ENSMUST00000198398 Trac TR_C_gene Interval_46922 chr13 73425567 73426269 + 0 NA Intergenic Intergenic -45833 ENSMUSG00000021608.15 ENSMUSG00000021608 ENSMUST00000222881 Lpcat1 protein_coding Interval_151666 chr7 125837592 125839015 + 0 NA intron (ENSMUSG00000032743.15, intron 1 of 14) protein_coding-intron (ENSMUSG00000032743.15, intron 14 of 27) 130386 ENSMUSG00000032743.15 ENSMUSG00000032743 ENSMUST00000155059 D430042O09Rik protein_coding Interval_62666 chr15 96119470 96119662 + 0 NA Intergenic Intergenic -64741 ENSMUSG00000078925.11 ENSMUSG00000078925 ENSMUST00000140253 D030018L15Rik lincRNA Interval_64723 chr16 14474213 14474411 + 0 NA TTS (ENSMUSG00000023088.17) protein_coding-TTS (ENSMUSG00000023088.17) 9434 ENSMUSG00000116439.1 ENSMUSG00000116439 ENSMUST00000231182 Gm49528 unprocessed_pseudogene Interval_98062 chr2 147320955 147321724 + 0 NA intron (ENSMUSG00000086509.2, intron 5 of 5) antisense-intron (ENSMUSG00000086509.2, intron 5 of 5) 3748 ENSMUSG00000084774.1 ENSMUSG00000084774 ENSMUST00000127688 Gm14110 lincRNA Interval_80389 chr18 41205583 41206747 + 0 NA Intergenic Intergenic 136206 ENSMUSG00000105169.1 ENSMUSG00000105169 ENSMUST00000196225 Gm44476 miRNA Interval_55710 chr14 99219386 99220193 + 0 NA intron (ENSMUSG00000022064.10, intron 6 of 8) protein_coding-intron (ENSMUSG00000022064.10, intron 15 of 17) 71847 ENSMUSG00000100172.1 ENSMUSG00000100172 ENSMUST00000186660 Gm4412 processed_pseudogene Interval_142084 chr6 137027443 137028027 + 0 NA Intergenic Intergenic 41139 ENSMUSG00000107734.1 ENSMUSG00000107734 ENSMUST00000203175 Gm30055 TEC Interval_115824 chr4 105076293 105076493 + 0 NA intron (ENSMUSG00000028518.8, intron 1 of 8) protein_coding-intron (ENSMUSG00000028518.8, intron 1 of 8) 33497 ENSMUSG00000028518.8 ENSMUSG00000028518 ENSMUST00000030243 Prkaa2 protein_coding Interval_118691 chr4 133217564 133218007 + 0 NA intron (ENSMUSG00000028865.14, intron 1 of 2) protein_coding-intron (ENSMUSG00000028865.14, intron 1 of 2) 4879 ENSMUSG00000028865.14 ENSMUSG00000028865 ENSMUST00000134713 Cd164l2 protein_coding Interval_121775 chr5 7911971 7912288 + 0 NA intron (ENSMUSG00000105068.1, intron 2 of 5) lincRNA-intron (ENSMUSG00000105068.1, intron 2 of 5) -11704 ENSMUSG00000104624.1 ENSMUSG00000104624 ENSMUST00000200381 Gm43478 processed_pseudogene Interval_31182 chr11 98748406 98749515 + 0 NA intron (ENSMUSG00000058756.13, intron 1 of 1) protein_coding-intron (ENSMUSG00000058756.13, intron 1 of 9) 8159 ENSMUSG00000058756.13 ENSMUSG00000058756 ENSMUST00000124072 Thra protein_coding Interval_140440 chr6 118111443 118112234 + 0 NA TTS (ENSMUSG00000077787.1) snoRNA-TTS (ENSMUSG00000077787.1) 207 ENSMUSG00000077787.1 ENSMUSG00000077787 ENSMUST00000104599 Gm23908 snoRNA Interval_82929 chr18 79507049 79508223 + 0 NA Intergenic Intergenic 46041 ENSMUSG00000087717.1 ENSMUSG00000087717 ENSMUST00000157092 Gm25824 snoRNA Interval_160374 chr8 108802948 108803276 + 0 NA intron (ENSMUSG00000038872.10, intron 9 of 15) protein_coding-intron (ENSMUSG00000038872.10, intron 3 of 9) -64450 ENSMUSG00000102989.1 ENSMUSG00000102989 ENSMUST00000195769 Gm38318 TEC Interval_44304 chr13 43503058 43503838 + 0 NA Intergenic Intergenic -3281 ENSMUSG00000113891.1 ENSMUSG00000113891 ENSMUST00000221151 Gm47683 lincRNA Interval_61197 chr15 79915961 79919229 + 0 NA TTS (ENSMUSG00000053411.16) protein_coding-TTS (ENSMUSG00000053411.16) 16235 ENSMUSG00000053411.16 ENSMUSG00000053411 ENSMUST00000177061 Cbx7 protein_coding Interval_93672 chr2 75741103 75741657 + 0 NA Intergenic Intergenic -11208 ENSMUSG00000087527.1 ENSMUSG00000087527 ENSMUST00000123829 Gm13656 lincRNA Interval_146128 chr7 44224995 44225878 + 0 NA promoter-TSS (ENSMUSG00000063903.5) protein_coding-promoter-TSS (ENSMUSG00000063903.5) -7 ENSMUSG00000063903.5 ENSMUSG00000063903 ENSMUST00000206144 Klk1 protein_coding Interval_40907 chr12 109739060 109739713 + 0 NA TTS (ENSMUSG00000065448.2) miRNA-TTS (ENSMUSG00000065448.2) 267 ENSMUSG00000070136.1 ENSMUSG00000070136 ENSMUST00000093627 Mir496a miRNA Interval_62065 chr15 86172941 86174117 + 0 NA intron (ENSMUSG00000035891.16, intron 1 of 12) protein_coding-intron (ENSMUSG00000035891.16, intron 1 of 12) -12199 ENSMUSG00000086424.1 ENSMUSG00000086424 ENSMUST00000133675 Gm15569 antisense Interval_124852 chr5 56672013 56672369 + 0 NA Intergenic Intergenic -63899 ENSMUSG00000088734.1 ENSMUSG00000088734 ENSMUST00000158109 Gm23896 snoRNA Interval_158071 chr8 78542897 78545707 + 0 NA intron (ENSMUSG00000031684.11, intron 4 of 10) protein_coding-intron (ENSMUSG00000031684.11, intron 4 of 11) 34956 ENSMUSG00000031684.11 ENSMUSG00000031684 ENSMUST00000210132 Slc10a7 protein_coding Interval_144360 chr7 24672058 24672273 + 0 NA promoter-TSS (ENSMUSG00000062773.6) protein_coding-promoter-TSS (ENSMUSG00000062773.6) 4510 ENSMUSG00000062773.6 ENSMUSG00000062773 ENSMUST00000206390 Tex101 protein_coding Interval_55356 chr14 84438052 84438486 + 0 NA Intergenic Intergenic -10238 ENSMUSG00000035566.7 ENSMUSG00000035566 ENSMUST00000226362 Pcdh17 protein_coding Interval_18186 chr10 83502435 83502731 + 0 NA intron (ENSMUSG00000020256.14, intron 15 of 22) protein_coding-intron (ENSMUSG00000020256.14, intron 15 of 22) -6566 ENSMUSG00000020256.14 ENSMUSG00000020256 ENSMUST00000125193 Aldh1l2 protein_coding Interval_92116 chr2 53397708 53398078 + 0 NA exon (ENSMUSG00000082472.1, exon 1 of 1) processed_pseudogene-exon (ENSMUSG00000082472.1, exon 1 of 1) 594 ENSMUSG00000082472.1 ENSMUSG00000082472 ENSMUST00000118477 Gm13501 processed_pseudogene Interval_64159 chr16 8773204 8773449 + 0 NA intron (ENSMUSG00000022710.17, intron 1 of 31) protein_coding-intron (ENSMUSG00000022710.17, intron 1 of 31) -7050 ENSMUSG00000084737.1 ENSMUSG00000084737 ENSMUST00000122788 Gm25805 snRNA Interval_94738 chr2 93891065 93892678 + 0 NA Intergenic Intergenic -35139 ENSMUSG00000075023.11 ENSMUSG00000075023 ENSMUST00000128995 Accsl protein_coding Interval_9480 chr1 157536659 157537922 + 0 NA promoter-TSS (ENSMUSG00000026589.14) protein_coding-promoter-TSS (ENSMUSG00000026589.14) -761 ENSMUSG00000026589.14 ENSMUSG00000026589 ENSMUST00000155665 Sec16b protein_coding Interval_74361 chr17 49449010 49449608 + 0 NA intron (ENSMUSG00000064120.14, intron 4 of 8) protein_coding-intron (ENSMUSG00000064120.14, intron 5 of 10) -20069 ENSMUSG00000092268.1 ENSMUSG00000092268 ENSMUST00000172972 Gm20540 processed_transcript Interval_127151 chr5 100651977 100652646 + 0 NA Intergenic Intergenic 12108 ENSMUSG00000029319.8 ENSMUSG00000029319 ENSMUST00000127811 Coq2 protein_coding Interval_117608 chr4 125007068 125007996 + 0 NA promoter-TSS (ENSMUSG00000028871.7) protein_coding-promoter-TSS (ENSMUSG00000028871.7) 52 ENSMUSG00000028871.7 ENSMUSG00000028871 ENSMUST00000140698 Rspo1 protein_coding Interval_120059 chr4 141582037 141582346 + 0 NA intron (ENSMUSG00000006219.12, intron 7 of 8) protein_coding-intron (ENSMUSG00000006219.12, intron 7 of 8) 23905 ENSMUSG00000006219.12 ENSMUSG00000006219 ENSMUST00000133874 Fblim1 protein_coding Interval_11679 chr1 184618133 184618478 + 0 NA promoter-TSS (ENSMUSG00000103308.5) lincRNA-promoter-TSS (ENSMUSG00000103308.5) 1057 ENSMUSG00000102606.1 ENSMUSG00000102606 ENSMUST00000193804 Rpl21-ps1 processed_pseudogene Interval_73633 chr17 41981787 41982037 + 0 NA Intergenic Intergenic -318224 ENSMUSG00000117001.1 ENSMUSG00000117001 ENSMUST00000232972 Gm49858 processed_pseudogene Interval_147523 chr7 68014400 68015019 + 0 NA intron (ENSMUSG00000005533.10, intron 2 of 20) protein_coding-intron (ENSMUSG00000005533.10, intron 2 of 20) -128124 ENSMUSG00000109152.1 ENSMUSG00000109152 ENSMUST00000208544 Gm44666 processed_pseudogene Interval_159037 chr8 88997237 88997565 + 0 NA Intergenic Intergenic -27334 ENSMUSG00000099078.1 ENSMUSG00000099078 ENSMUST00000183771 Mir8110 miRNA Interval_14382 chr10 32091494 32092240 + 0 NA intron (ENSMUSG00000069670.8, intron 3 of 3) protein_coding-intron (ENSMUSG00000069670.8, intron 3 of 6) -118198 ENSMUSG00000112906.1 ENSMUSG00000112906 ENSMUST00000218153 Gm18189 processed_pseudogene Interval_31284 chr11 99327308 99327908 + 0 NA TTS (ENSMUSG00000075570.2) protein_coding-TTS (ENSMUSG00000075570.2) -4657 ENSMUSG00000035831.2 ENSMUSG00000035831 ENSMUST00000038004 Krt25 protein_coding Interval_154294 chr8 14079246 14079583 + 0 NA intron (ENSMUSG00000051978.9, intron 1 of 4) protein_coding-intron (ENSMUSG00000051978.9, intron 1 of 5) 10865 ENSMUSG00000051978.9 ENSMUSG00000051978 ENSMUST00000211242 Erich1 protein_coding Interval_62242 chr15 89122657 89123920 + 0 NA promoter-TSS (ENSMUSG00000051786.15) protein_coding-promoter-TSS (ENSMUSG00000051786.15) -176 ENSMUSG00000051786.15 ENSMUSG00000051786 ENSMUST00000231098 Tubgcp6 protein_coding Interval_146543 chr7 46744389 46744652 + 0 NA Intergenic Intergenic -1578 ENSMUSG00000074115.5 ENSMUSG00000074115 ENSMUST00000128088 Saa1 protein_coding Interval_38270 chr12 76821695 76822985 + 0 NA exon (ENSMUSG00000021062.15, exon 1 of 7) protein_coding-exon (ENSMUSG00000021062.15, exon 1 of 7) 568 ENSMUSG00000021062.15 ENSMUSG00000021062 ENSMUST00000134124 Rab15 protein_coding Interval_174746 chrX 164969520 164970239 + 0 NA intron (ENSMUSG00000061778.10, intron 1 of 1) protein_coding-intron (ENSMUSG00000061778.10, intron 2 of 14) 10464 ENSMUSG00000061778.10 ENSMUSG00000061778 ENSMUST00000154681 Mospd2 protein_coding Interval_62911 chr15 97836354 97836999 + 0 NA intron (ENSMUSG00000022475.19, intron 1 of 21) protein_coding-intron (ENSMUSG00000022475.19, intron 1 of 23) -5182 ENSMUSG00000022475.19 ENSMUSG00000022475 ENSMUST00000134258 Hdac7 protein_coding Interval_133084 chr5 149707958 149708292 + 0 NA intron (ENSMUSG00000051950.10, intron 3 of 14) protein_coding-intron (ENSMUSG00000051950.10, intron 3 of 14) -31407 ENSMUSG00000051950.10 ENSMUSG00000051950 ENSMUST00000201088 B3glct protein_coding Interval_147531 chr7 68116573 68117326 + 0 NA intron (ENSMUSG00000005533.10, intron 2 of 20) protein_coding-intron (ENSMUSG00000005533.10, intron 2 of 20) -94889 ENSMUSG00000005533.10 ENSMUSG00000005533 ENSMUST00000208871 Igf1r protein_coding Interval_150594 chr7 112698638 112700356 + 0 NA intron (ENSMUSG00000055320.18, intron 2 of 2) protein_coding-intron (ENSMUSG00000055320.18, intron 1 of 13) -14454 ENSMUSG00000106046.1 ENSMUSG00000106046 ENSMUST00000199696 Gm44462 miRNA Interval_154850 chr8 24374490 24374975 + 0 NA Intergenic Intergenic -15296 ENSMUSG00000109299.1 ENSMUSG00000109299 ENSMUST00000207438 Gm45164 lincRNA Interval_78850 chr18 20961082 20962410 + 0 NA exon (ENSMUSG00000033107.6, exon 1 of 6) protein_coding-exon (ENSMUSG00000033107.6, exon 1 of 6) 274 ENSMUSG00000033107.6 ENSMUSG00000033107 ENSMUST00000234316 Rnf125 protein_coding Interval_82884 chr18 78215219 78215592 + 0 NA intron (ENSMUSG00000024552.16, intron 3 of 21) protein_coding-intron (ENSMUSG00000024552.16, intron 3 of 11) -73286 ENSMUSG00000059336.14 ENSMUSG00000059336 ENSMUST00000160639 Slc14a1 protein_coding Interval_137330 chr6 71405611 71405897 + 0 NA intron (ENSMUSG00000002222.14, intron 4 of 8) protein_coding-intron (ENSMUSG00000002222.14, intron 4 of 8) -6461 ENSMUSG00000002222.14 ENSMUSG00000002222 ENSMUST00000123947 Rmnd5a protein_coding Interval_84553 chr19 12723865 12724527 + 0 NA Intergenic Intergenic -2993 ENSMUSG00000084981.7 ENSMUSG00000084981 ENSMUST00000124184 Gm15962 antisense Interval_1621 chr1 30274618 30274852 + 0 NA Intergenic Intergenic 58662 ENSMUSG00000098883.1 ENSMUSG00000098883 ENSMUST00000184585 Gm27430 miRNA Interval_41664 chr12 117533298 117534769 + 0 NA exon (ENSMUSG00000041992.9, exon 1 of 9) protein_coding-exon (ENSMUSG00000041992.9, exon 1 of 9) -40309 ENSMUSG00000089482.1 ENSMUSG00000089482 ENSMUST00000158857 Gm24741 rRNA Interval_144633 chr7 27257500 27259869 + 0 NA promoter-TSS (ENSMUSG00000063160.12) protein_coding-promoter-TSS (ENSMUSG00000063160.12) -122 ENSMUSG00000063160.12 ENSMUSG00000063160 ENSMUST00000134215 Numbl protein_coding Interval_72680 chr17 31519530 31520953 + 0 NA promoter-TSS (ENSMUSG00000024037.13) protein_coding-promoter-TSS (ENSMUSG00000024037.13) 56 ENSMUSG00000024038.17 ENSMUSG00000024038 ENSMUST00000185273 Ndufv3 protein_coding Interval_94511 chr2 91772416 91773317 + 0 NA promoter-TSS (ENSMUSG00000040506.16) protein_coding-promoter-TSS (ENSMUSG00000040506.16) 42684 ENSMUSG00000040506.16 ENSMUSG00000040506 ENSMUST00000142224 Ambra1 protein_coding Interval_87658 chr19 54044528 54047832 + 0 NA exon (ENSMUSG00000033717.6, exon 1 of 1) protein_coding-exon (ENSMUSG00000033717.6, exon 1 of 1) 920 ENSMUSG00000033717.6 ENSMUSG00000033717 ENSMUST00000237285 Adra2a protein_coding Interval_96076 chr2 119627627 119628335 + 0 NA intron (ENSMUSG00000027306.15, intron 3 of 10) protein_coding-intron (ENSMUSG00000027306.15, intron 3 of 9) -3137 ENSMUSG00000064906.1 ENSMUSG00000064906 ENSMUST00000082972 n-R5s204 rRNA Interval_4853 chr1 80257733 80258119 + 0 NA Intergenic Intergenic -1729 ENSMUSG00000103404.1 ENSMUSG00000103404 ENSMUST00000192258 Gm37932 TEC Interval_146315 chr7 45304596 45305702 + 0 NA promoter-TSS (ENSMUSG00000038260.10) protein_coding-promoter-TSS (ENSMUSG00000038260.10) -19816 ENSMUSG00000046721.11 ENSMUSG00000046721 ENSMUST00000026901 Rpl14-ps1 processed_pseudogene Interval_22459 chr11 10457925 10458373 + 0 NA Intergenic Intergenic -81067 ENSMUSG00000084045.1 ENSMUSG00000084045 ENSMUST00000118697 Gm11997 processed_pseudogene Interval_111887 chr4 32258095 32258350 + 0 NA intron (ENSMUSG00000087049.1, intron 2 of 3) protein_coding-intron (ENSMUSG00000040270.16, intron 1 of 7) 6461 ENSMUSG00000087049.1 ENSMUSG00000087049 ENSMUST00000133451 Bach2it1 sense_intronic Interval_20656 chr10 120064354 120064657 + 0 NA intron (ENSMUSG00000034813.18, intron 13 of 14) protein_coding-intron (ENSMUSG00000034813.18, intron 21 of 22) 48360 ENSMUSG00000020228.11 ENSMUSG00000020228 ENSMUST00000154501 Helb protein_coding Interval_8516 chr1 140505194 140505542 + 0 NA intron (ENSMUSG00000052726.16, intron 14 of 26) protein_coding-intron (ENSMUSG00000052726.16, intron 14 of 26) 151036 ENSMUSG00000102368.1 ENSMUSG00000102368 ENSMUST00000193820 4930590L20Rik antisense Interval_82026 chr18 67255323 67255753 + 0 NA Intergenic Intergenic -10097 ENSMUSG00000062526.4 ENSMUSG00000062526 ENSMUST00000237631 Mppe1 protein_coding Interval_159432 chr8 94601189 94602819 + 0 NA promoter-TSS (ENSMUSG00000031774.8) protein_coding-promoter-TSS (ENSMUSG00000031774.8) 39 ENSMUSG00000050079.10 ENSMUSG00000050079 ENSMUST00000211941 Rspry1 protein_coding Interval_106173 chr3 94328615 94329331 + 0 NA intron (ENSMUSG00000028145.9, intron 4 of 5) protein_coding-intron (ENSMUSG00000028145.9, intron 4 of 5) 6359 ENSMUSG00000105506.1 ENSMUSG00000105506 ENSMUST00000198353 Gm43743 transcribed_processed_pseudogene Interval_74422 chr17 50189226 50191000 + 0 NA intron (ENSMUSG00000039316.14, intron 1 of 6) protein_coding-intron (ENSMUSG00000039316.14, intron 1 of 9) 384 ENSMUSG00000039316.14 ENSMUSG00000039316 ENSMUST00000156094 Rftn1 protein_coding Interval_81945 chr18 66147103 66147951 + 0 NA intron (ENSMUSG00000117764.1, intron 1 of 1) protein_coding-intron (ENSMUSG00000046318.16, intron 2 of 11) 70761 ENSMUSG00000117764.1 ENSMUSG00000117764 ENSMUST00000236179 Gm50143 sense_intronic Interval_70925 chr17 16012609 16012820 + 0 NA Intergenic Intergenic -150437 ENSMUSG00000116839.1 ENSMUSG00000116839 ENSMUST00000232488 Gm49778 lincRNA Interval_2005 chr1 35850139 35851320 + 0 NA Intergenic Intergenic -29116 ENSMUSG00000102531.1 ENSMUSG00000102531 ENSMUST00000194261 1110002O04Rik lincRNA Interval_47519 chr13 86140764 86141072 + 0 NA Intergenic Intergenic -94571 ENSMUSG00000017778.14 ENSMUSG00000017778 ENSMUST00000017922 Cox7c protein_coding Interval_10884 chr1 176612387 176613496 + 0 NA Intergenic Intergenic 29617 ENSMUSG00000103471.1 ENSMUSG00000103471 ENSMUST00000193453 Gm17966 processed_pseudogene Interval_30926 chr11 97254171 97254432 + 0 NA intron (ENSMUSG00000001441.13, intron 2 of 11) protein_coding-intron (ENSMUSG00000001441.13, intron 3 of 22) -25827 ENSMUSG00000086680.2 ENSMUSG00000086680 ENSMUST00000133160 Gm11592 antisense Interval_114600 chr4 82953997 82954216 + 0 NA intron (ENSMUSG00000059049.14, intron 23 of 36) protein_coding-intron (ENSMUSG00000059049.14, intron 22 of 35) -68958 ENSMUSG00000038192.5 ENSMUSG00000038192 ENSMUST00000048430 Cer1 protein_coding Interval_166211 chr9 57520549 57524011 + 0 NA intron (ENSMUSG00000000088.7, intron 1 of 2) protein_coding-intron (ENSMUSG00000000088.7, intron 1 of 4) 947 ENSMUSG00000000088.7 ENSMUSG00000000088 ENSMUST00000214154 Cox5a protein_coding Interval_132089 chr5 142723597 142724167 + 0 NA TTS (ENSMUSG00000039477.16) protein_coding-TTS (ENSMUSG00000039477.16) 31370 ENSMUSG00000050822.11 ENSMUSG00000050822 ENSMUST00000058418 Slc29a4 protein_coding Interval_125430 chr5 67052618 67054347 + 0 NA TTS (ENSMUSG00000080601.1) miRNA-TTS (ENSMUSG00000080601.1) 310 ENSMUSG00000080601.1 ENSMUSG00000080601 ENSMUST00000116951 Gm23841 miRNA Interval_38976 chr12 84222472 84222772 + 0 NA Intergenic Intergenic -3741 ENSMUSG00000042507.15 ENSMUSG00000042507 ENSMUST00000130038 Elmsan1 protein_coding Interval_134845 chr6 32261384 32261731 + 0 NA intron (ENSMUSG00000029765.12, intron 4 of 31) protein_coding-intron (ENSMUSG00000029765.12, intron 4 of 31) -36358 ENSMUSG00000029765.12 ENSMUSG00000029765 ENSMUST00000200732 Plxna4 protein_coding Interval_86199 chr19 37716700 37716909 + 0 NA Intergenic Intergenic 6619 ENSMUSG00000117989.1 ENSMUSG00000117989 ENSMUST00000235833 Gm9066 processed_pseudogene Interval_153070 chr7 141167907 141168988 + 0 NA promoter-TSS (ENSMUSG00000038650.15) protein_coding-promoter-TSS (ENSMUSG00000038650.15) -256 ENSMUSG00000038650.15 ENSMUSG00000038650 ENSMUST00000210979 Rnh1 protein_coding Interval_82699 chr18 76046075 76046367 + 0 NA intron (ENSMUSG00000044646.15, intron 3 of 5) protein_coding-intron (ENSMUSG00000044646.15, intron 3 of 4) -30544 ENSMUSG00000118311.1 ENSMUSG00000118311 ENSMUST00000238127 1700003O11Rik antisense Interval_78295 chr18 11781869 11782088 + 0 NA Intergenic Intergenic -29423 ENSMUSG00000117589.1 ENSMUSG00000117589 ENSMUST00000234203 Gm18713 processed_pseudogene Interval_129723 chr5 121966790 121967420 + 0 NA intron (ENSMUSG00000042589.18, intron 1 of 6) protein_coding-intron (ENSMUSG00000042589.18, intron 2 of 22) -58225 ENSMUSG00000105795.1 ENSMUSG00000105795 ENSMUST00000198001 Gm3970 antisense Interval_79897 chr18 35792754 35793275 + 0 NA exon (ENSMUSG00000091896.8, exon 1 of 6) protein_coding-exon (ENSMUSG00000091896.8, exon 1 of 6) -6828 ENSMUSG00000117841.1 ENSMUSG00000117841 ENSMUST00000235919 Gm50371 processed_transcript Interval_66705 chr16 36487134 36489696 + 0 NA Intergenic Intergenic -14574 ENSMUSG00000116917.1 ENSMUSG00000116917 ENSMUST00000231458 Gm49653 TEC Interval_62844 chr15 97372655 97373464 + 0 NA intron (ENSMUSG00000044250.8, intron 1 of 1) protein_coding-intron (ENSMUSG00000044250.8, intron 4 of 5) 11857 ENSMUSG00000044250.8 ENSMUSG00000044250 ENSMUST00000226495 Pced1b protein_coding Interval_98709 chr2 154450706 154450945 + 0 NA intron (ENSMUSG00000038533.15, intron 1 of 2) protein_coding-intron (ENSMUSG00000038533.15, intron 1 of 10) 13983 ENSMUSG00000038533.15 ENSMUSG00000038533 ENSMUST00000139506 Cbfa2t2 protein_coding Interval_99581 chr2 163346443 163346921 + 0 NA intron (ENSMUSG00000017817.11, intron 3 of 6) protein_coding-intron (ENSMUSG00000017817.11, intron 2 of 5) 51311 ENSMUSG00000017817.11 ENSMUSG00000017817 ENSMUST00000109425 Jph2 protein_coding Interval_137518 chr6 72853880 72855852 + 0 NA intron (ENSMUSG00000055239.10, intron 2 of 3) protein_coding-intron (ENSMUSG00000055239.10, intron 3 of 6) 41053 ENSMUSG00000107610.1 ENSMUSG00000107610 ENSMUST00000205107 D530018E20Rik TEC Interval_155463 chr8 33747756 33748005 + 0 NA promoter-TSS (ENSMUSG00000094500.2) protein_coding-promoter-TSS (ENSMUSG00000094500.2) -110 ENSMUSG00000094500.2 ENSMUSG00000094500 ENSMUST00000179364 Smim18 protein_coding Interval_162835 chr9 10153615 10154144 + 0 NA intron (ENSMUSG00000039488.15, intron 4 of 24) protein_coding-intron (ENSMUSG00000039488.15, intron 2 of 22) 136708 ENSMUSG00000093959.1 ENSMUSG00000093959 ENSMUST00000178287 Gm24496 miRNA Interval_144680 chr7 27494817 27495346 + 0 NA Intergenic Intergenic -2307 ENSMUSG00000053198.14 ENSMUSG00000053198 ENSMUST00000065487 Prx protein_coding Interval_80720 chr18 46573731 46575778 + 0 NA promoter-TSS (ENSMUSG00000056130.10) protein_coding-promoter-TSS (ENSMUSG00000056130.10) -221 ENSMUSG00000056130.10 ENSMUSG00000056130 ENSMUST00000149929 Ticam2 protein_coding Interval_78650 chr18 16435919 16437525 + 0 NA Intergenic Intergenic -161778 ENSMUSG00000063628.2 ENSMUSG00000063628 ENSMUST00000076710 Gm7665 processed_pseudogene Interval_56780 chr14 122047966 122048209 + 0 NA Intergenic Intergenic 13413 ENSMUSG00000071229.3 ENSMUSG00000071229 ENSMUST00000045976 Timm8a2 protein_coding Interval_115614 chr4 101394601 101395361 + 0 NA intron (ENSMUSG00000087361.7, intron 3 of 3) lincRNA-intron (ENSMUSG00000087361.7, intron 3 of 3) -8100 ENSMUSG00000084758.1 ENSMUSG00000084758 ENSMUST00000124786 Gm12798 lincRNA Interval_153940 chr8 11385350 11385715 + 0 NA intron (ENSMUSG00000031503.13, intron 4 of 47) protein_coding-intron (ENSMUSG00000031503.13, intron 4 of 47) 32360 ENSMUSG00000084783.1 ENSMUSG00000084783 ENSMUST00000148654 Gm15419 antisense Interval_164612 chr9 40040624 40041172 + 0 NA TTS (ENSMUSG00000111553.1) processed_pseudogene-TTS (ENSMUSG00000111553.1) 1007 ENSMUSG00000111553.1 ENSMUSG00000111553 ENSMUST00000217628 Gm18892 processed_pseudogene Interval_37231 chr12 61723142 61723822 + 0 NA intron (ENSMUSG00000035653.16, intron 2 of 5) protein_coding-intron (ENSMUSG00000035653.16, intron 2 of 3) -29064 ENSMUSG00000113588.1 ENSMUSG00000113588 ENSMUST00000220943 Gm48328 TEC Interval_121474 chr4 156030881 156032365 + 0 NA promoter-TSS (ENSMUSG00000087381.8) antisense-promoter-TSS (ENSMUSG00000087381.8) 5291 ENSMUSG00000041954.18 ENSMUSG00000041954 ENSMUST00000125100 Tnfrsf18 protein_coding Interval_18060 chr10 81596749 81597595 + 0 NA intron (ENSMUSG00000034758.12, intron 4 of 5) protein_coding-intron (ENSMUSG00000034758.12, intron 4 of 13) -1757 ENSMUSG00000034758.12 ENSMUSG00000034758 ENSMUST00000127546 Tle6 protein_coding Interval_142403 chr6 141596454 141597267 + 0 NA Intergenic Intergenic -37598 ENSMUSG00000030236.10 ENSMUSG00000030236 ENSMUST00000160179 Slco1b2 protein_coding Interval_57004 chr15 3987921 3988793 + 0 NA intron (ENSMUSG00000041935.10, intron 4 of 4) protein_coding-intron (ENSMUSG00000041935.10, intron 5 of 5) 3721 ENSMUSG00000041935.10 ENSMUSG00000041935 ENSMUST00000228421 AW549877 protein_coding Interval_43066 chr13 23573729 23574909 + 0 NA promoter-TSS (ENSMUSG00000071478.6) protein_coding-promoter-TSS (ENSMUSG00000071478.6) -62 ENSMUSG00000071478.6 ENSMUSG00000071478 ENSMUST00000090776 H2ac7 protein_coding Interval_60935 chr15 77995149 77995995 + 0 NA exon (ENSMUSG00000019146.2, exon 4 of 4) protein_coding-exon (ENSMUSG00000019146.2, exon 4 of 4) -31800 ENSMUSG00000016554.9 ENSMUSG00000016554 ENSMUST00000229713 Eif3d protein_coding Interval_55584 chr14 93884462 93884654 + 0 NA intron (ENSMUSG00000055421.8, intron 2 of 4) protein_coding-intron (ENSMUSG00000055421.8, intron 1 of 3) 6111 ENSMUSG00000055421.8 ENSMUSG00000055421 ENSMUST00000194056 Pcdh9 protein_coding Interval_31872 chr11 103492933 103493556 + 0 NA intron (ENSMUSG00000078632.4, intron 3 of 13) protein_coding-intron (ENSMUSG00000078632.4, intron 3 of 13) 11353 ENSMUSG00000078632.4 ENSMUSG00000078632 ENSMUST00000153273 Lrrc37a protein_coding Interval_114205 chr4 67308371 67308620 + 0 NA Intergenic Intergenic 143016 ENSMUSG00000081435.1 ENSMUSG00000081435 ENSMUST00000122195 Gm11403 processed_pseudogene Interval_154587 chr8 21272232 21272637 + 0 NA TTS (ENSMUSG00000094180.1) unprocessed_pseudogene-TTS (ENSMUSG00000094180.1) 1741 ENSMUSG00000094180.1 ENSMUSG00000094180 ENSMUST00000120972 Defa-ps8 unprocessed_pseudogene Interval_14844 chr10 40433967 40434483 + 0 NA intron (ENSMUSG00000038481.13, intron 2 of 11) protein_coding-intron (ENSMUSG00000038481.13, intron 2 of 12) -84122 ENSMUSG00000038491.9 ENSMUSG00000038491 ENSMUST00000044774 Cdk19os antisense Interval_149606 chr7 100005753 100006697 + 0 NA promoter-TSS (ENSMUSG00000030732.13) protein_coding-promoter-TSS (ENSMUSG00000030732.13) 53 ENSMUSG00000030732.13 ENSMUSG00000030732 ENSMUST00000144808 Chrdl2 protein_coding Interval_155623 chr8 35242852 35244320 + 0 NA intron (ENSMUSG00000109688.1, intron 1 of 3) lincRNA-intron (ENSMUSG00000109688.1, intron 1 of 3) 1893 ENSMUSG00000109688.1 ENSMUSG00000109688 ENSMUST00000211189 Gm34597 lincRNA Interval_164692 chr9 40631225 40632003 + 0 NA Intergenic Intergenic -15228 ENSMUSG00000111504.1 ENSMUSG00000111504 ENSMUST00000216936 Gm48284 lincRNA Interval_76205 chr17 77157435 77157666 + 0 NA Intergenic Intergenic 205660 ENSMUSG00000117578.1 ENSMUSG00000117578 ENSMUST00000234215 Rpsa-ps8 processed_pseudogene Interval_102918 chr3 32762674 32765329 + 0 NA Intergenic Intergenic -26396 ENSMUSG00000037531.8 ENSMUSG00000037531 ENSMUST00000192021 Mrpl47 protein_coding Interval_59866 chr15 60310536 60311091 + 0 NA Intergenic Intergenic -13863 ENSMUSG00000115838.1 ENSMUSG00000115838 ENSMUST00000228640 Gm46507 processed_pseudogene Interval_32013 chr11 104448342 104449671 + 0 NA intron (ENSMUSG00000018412.16, intron 1 of 2) protein_coding-intron (ENSMUSG00000018412.16, intron 2 of 14) 18985 ENSMUSG00000018412.16 ENSMUSG00000018412 ENSMUST00000134266 Kansl1 protein_coding Interval_125878 chr5 75255376 75255645 + 0 NA Intergenic Intergenic 9067 ENSMUSG00000106704.1 ENSMUSG00000106704 ENSMUST00000201331 Gm42799 processed_pseudogene Interval_98384 chr2 151994339 151995075 + 0 NA Intergenic Intergenic -5158 ENSMUSG00000027463.14 ENSMUSG00000027463 ENSMUST00000109858 Slc52a3 protein_coding Interval_119587 chr4 138522246 138522662 + 0 NA Intergenic Intergenic 65275 ENSMUSG00000088589.1 ENSMUSG00000088589 ENSMUST00000157964 Gm22961 snRNA Interval_99186 chr2 157890620 157891408 + 0 NA exon (ENSMUSG00000027649.15, exon 16 of 16) protein_coding-exon (ENSMUSG00000027649.15, exon 16 of 16) -10522 ENSMUSG00000062846.7 ENSMUSG00000062846 ENSMUST00000121302 Gm14176 processed_pseudogene Interval_12538 chr1 194985194 194986217 + 0 NA intron (ENSMUSG00000096929.7, intron 2 of 3) processed_transcript-intron (ENSMUSG00000096929.7, intron 2 of 3) -7553 ENSMUSG00000104525.1 ENSMUSG00000104525 ENSMUST00000192325 Gm37334 TEC Interval_106203 chr3 94581785 94582976 + 0 NA exon (ENSMUSG00000028136.15, exon 1 of 12) protein_coding-exon (ENSMUSG00000028136.15, exon 1 of 12) -5346 ENSMUSG00000105412.1 ENSMUSG00000105412 ENSMUST00000198380 Gm43768 sense_intronic Interval_88477 chr2 5458139 5459077 + 0 NA intron (ENSMUSG00000039145.16, intron 2 of 2) protein_coding-intron (ENSMUSG00000039145.16, intron 2 of 10) -144963 ENSMUSG00000082013.1 ENSMUSG00000082013 ENSMUST00000117145 Gm13216 processed_pseudogene Interval_61086 chr15 79148381 79148998 + 0 NA intron (ENSMUSG00000033020.7, intron 3 of 4) protein_coding-intron (ENSMUSG00000033020.7, intron 3 of 4) 7680 ENSMUSG00000033020.7 ENSMUSG00000033020 ENSMUST00000229762 Polr2f protein_coding Interval_53842 chr14 62587135 62588003 + 0 NA exon (ENSMUSG00000035184.15, exon 3 of 4) protein_coding-exon (ENSMUSG00000035184.15, exon 3 of 4) -20648 ENSMUSG00000100486.7 ENSMUSG00000100486 ENSMUST00000209021 Gm4131 protein_coding Interval_144328 chr7 24501122 24501738 + 0 NA intron (ENSMUSG00000054793.8, intron 2 of 3) protein_coding-intron (ENSMUSG00000054793.8, intron 6 of 8) 1469 ENSMUSG00000054793.8 ENSMUSG00000054793 ENSMUST00000205820 Cadm4 protein_coding Interval_108927 chr3 133405360 133406616 + 0 NA Intergenic Intergenic 25835 ENSMUSG00000080506.1 ENSMUSG00000080506 ENSMUST00000116856 Gm25042 miRNA Interval_22822 chr11 16357791 16358276 + 0 NA intron (ENSMUSG00000048834.16, intron 4 of 6) protein_coding-intron (ENSMUSG00000048834.16, intron 4 of 6) -81221 ENSMUSG00000083925.1 ENSMUSG00000083925 ENSMUST00000118857 Gm12012 processed_pseudogene Interval_85787 chr19 31119307 31120806 + 0 NA intron (ENSMUSG00000052920.16, intron 3 of 17) protein_coding-intron (ENSMUSG00000052920.16, intron 3 of 17) 7510 ENSMUSG00000118011.1 ENSMUSG00000118011 ENSMUST00000235353 Gm50266 processed_pseudogene Interval_32347 chr11 107098445 107098770 + 0 NA intron (ENSMUSG00000040481.17, intron 3 of 29) protein_coding-intron (ENSMUSG00000040481.17, intron 3 of 27) -51264 ENSMUSG00000040481.17 ENSMUSG00000040481 ENSMUST00000149486 Bptf protein_coding Interval_20367 chr10 117141066 117142119 + 0 NA intron (ENSMUSG00000020170.4, intron 1 of 5) protein_coding-intron (ENSMUSG00000020170.4, intron 1 of 9) 6903 ENSMUSG00000020170.4 ENSMUSG00000020170 ENSMUST00000219104 Frs2 protein_coding Interval_74492 chr17 51880889 51881115 + 0 NA Intergenic Intergenic -1725 ENSMUSG00000117175.1 ENSMUSG00000117175 ENSMUST00000233779 Gm20098 lincRNA Interval_169457 chr9 97583303 97584143 + 0 NA intron (ENSMUSG00000032452.12, intron 2 of 16) protein_coding-intron (ENSMUSG00000032452.12, intron 2 of 17) -144096 ENSMUSG00000077208.1 ENSMUSG00000077208 ENSMUST00000104020 Gm25607 snoRNA Interval_18915 chr10 93095054 93095791 + 0 NA Intergenic Intergenic 10171 ENSMUSG00000111013.1 ENSMUSG00000111013 ENSMUST00000214288 Gm32468 lincRNA Interval_29855 chr11 87335913 87336494 + 0 NA intron (ENSMUSG00000046442.4, intron 1 of 3) protein_coding-intron (ENSMUSG00000046442.4, intron 1 of 6) -17404 ENSMUSG00000088001.1 ENSMUSG00000088001 ENSMUST00000157376 Gm22883 snRNA Interval_68012 chr16 63575138 63575422 + 0 NA intron (ENSMUSG00000052504.7, intron 13 of 16) protein_coding-intron (ENSMUSG00000052504.7, intron 13 of 16) -83163 ENSMUSG00000116752.1 ENSMUSG00000116752 ENSMUST00000231817 Gm49622 lincRNA Interval_166749 chr9 62407328 62408528 + 0 NA Intergenic Intergenic 41220 ENSMUSG00000041729.15 ENSMUSG00000041729 ENSMUST00000123379 Coro2b protein_coding Interval_130156 chr5 124578377 124579575 + 0 NA promoter-TSS (ENSMUSG00000029387.10) protein_coding-promoter-TSS (ENSMUSG00000029387.10) 85 ENSMUSG00000029388.14 ENSMUSG00000029388 ENSMUST00000135163 Eif2b1 protein_coding Interval_104229 chr3 61305638 61307207 + 0 NA Intergenic Intergenic -14976 ENSMUSG00000102242.1 ENSMUSG00000102242 ENSMUST00000194615 Gm37719 processed_pseudogene Interval_101914 chr3 11184687 11184932 + 0 NA Intergenic Intergenic 30472 ENSMUSG00000095289.1 ENSMUSG00000095289 ENSMUST00000175281 Gm22547 miRNA Interval_44242 chr13 42818072 42818957 + 0 NA intron (ENSMUSG00000054728.17, intron 3 of 13) protein_coding-intron (ENSMUSG00000054728.17, intron 1 of 11) -30256 ENSMUSG00000089710.1 ENSMUSG00000089710 ENSMUST00000160241 Gm15810 antisense Interval_153421 chr7 144620673 144621598 + 0 NA TTS (ENSMUSG00000031075.19) protein_coding-TTS (ENSMUSG00000031075.19) -38672 ENSMUSG00000031077.7 ENSMUSG00000031077 ENSMUST00000033394 Fadd protein_coding Interval_138977 chr6 93964948 93965554 + 0 NA intron (ENSMUSG00000045095.16, intron 1 of 24) protein_coding-intron (ENSMUSG00000045095.16, intron 1 of 21) -52747 ENSMUSG00000045095.16 ENSMUSG00000045095 ENSMUST00000203034 Magi1 protein_coding Interval_64856 chr16 16592604 16592986 + 0 NA intron (ENSMUSG00000022788.16, intron 1 of 8) protein_coding-intron (ENSMUSG00000022788.16, intron 1 of 8) -32749 ENSMUSG00000022788.16 ENSMUSG00000022788 ENSMUST00000161624 Fgd4 protein_coding Interval_143548 chr7 12565951 12566653 + 0 NA exon (ENSMUSG00000096002.2, exon 6 of 6) protein_coding-exon (ENSMUSG00000096002.2, exon 6 of 6) 6442 ENSMUSG00000110022.1 ENSMUSG00000110022 ENSMUST00000209381 Gm45475 processed_pseudogene Interval_121370 chr4 155307494 155308681 + 0 NA intron (ENSMUSG00000029053.16, intron 4 of 17) protein_coding-intron (ENSMUSG00000029053.16, intron 4 of 17) -35596 ENSMUSG00000098729.1 ENSMUSG00000098729 ENSMUST00000184626 Gm27200 antisense Interval_152496 chr7 133555937 133556373 + 0 NA Intergenic Intergenic 46003 ENSMUSG00000030976.3 ENSMUSG00000030976 ENSMUST00000033275 Tex36 protein_coding Interval_122011 chr5 13902634 13903110 + 0 NA promoter-TSS (ENSMUSG00000089244.1) miRNA-promoter-TSS (ENSMUSG00000089244.1) 2 ENSMUSG00000089244.1 ENSMUSG00000089244 ENSMUST00000158619 Gm24054 miRNA Interval_12645 chr10 4110758 4111977 + 0 NA intron (ENSMUSG00000040675.17, intron 26 of 27) protein_coding-intron (ENSMUSG00000040675.17, intron 26 of 27) 7054 ENSMUSG00000065792.1 ENSMUSG00000065792 ENSMUST00000083858 Gm25515 snRNA Interval_170001 chr9 103535863 103536723 + 0 NA intron (ENSMUSG00000111278.1, intron 1 of 2) protein_coding-intron (ENSMUSG00000042757.16, intron 2 of 4) 7241 ENSMUSG00000102257.1 ENSMUSG00000102257 ENSMUST00000192079 Gm37649 TEC Interval_53858 chr14 62846873 62847287 + 0 NA intron (ENSMUSG00000014547.10, intron 1 of 3) protein_coding-intron (ENSMUSG00000014547.10, intron 1 of 11) 9359 ENSMUSG00000099245.1 ENSMUSG00000099245 ENSMUST00000184011 Mir8098 miRNA Interval_157500 chr8 70911562 70914995 + 0 NA TTS (ENSMUSG00000019261.3) protein_coding-TTS (ENSMUSG00000019261.3) 7285 ENSMUSG00000019261.3 ENSMUSG00000019261 ENSMUST00000212143 Map1s protein_coding Interval_84040 chr19 6896885 6898226 + 0 NA Intergenic Intergenic 11975 ENSMUSG00000024953.17 ENSMUSG00000024953 ENSMUST00000173091 Prdx5 protein_coding Interval_55 GL456212.1 93913 95019 + 0 NA NA NA NA NA Interval_97782 chr2 144009875 144011698 + 0 NA intron (ENSMUSG00000027422.15, intron 1 of 2) protein_coding-intron (ENSMUSG00000027422.15, intron 1 of 23) -22316 ENSMUSG00000037307.11 ENSMUSG00000037307 ENSMUST00000110032 Banf2 protein_coding Interval_122640 chr5 24393540 24394979 + 0 NA promoter-TSS (ENSMUSG00000028973.18) protein_coding-promoter-TSS (ENSMUSG00000028973.18) -3624 ENSMUSG00000038295.14 ENSMUSG00000038295 ENSMUST00000128831 Atg9b protein_coding Interval_86304 chr19 38524347 38524951 + 0 NA TTS (ENSMUSG00000024998.17) protein_coding-TTS (ENSMUSG00000024998.17) -51447 ENSMUSG00000088940.1 ENSMUSG00000088940 ENSMUST00000158315 Gm24930 misc_RNA Interval_173411 chrX 90775390 90775983 + 0 NA Intergenic Intergenic -30624 ENSMUSG00000084289.1 ENSMUSG00000084289 ENSMUST00000121568 Gm6977 processed_pseudogene Interval_59582 chr15 55576908 55578000 + 0 NA exon (ENSMUSG00000022369.13, exon 11 of 22) protein_coding-exon (ENSMUSG00000022369.13, exon 11 of 22) -19706 ENSMUSG00000022370.13 ENSMUSG00000022370 ENSMUST00000170135 Mrpl13 protein_coding Interval_145064 chr7 29828837 29830168 + 0 NA exon (ENSMUSG00000011427.16, exon 5 of 5) protein_coding-exon (ENSMUSG00000011427.16, exon 5 of 5) 10511 ENSMUSG00000011427.16 ENSMUSG00000011427 ENSMUST00000207328 Zfp790 protein_coding Interval_88558 chr2 6129511 6130402 + 0 NA exon (ENSMUSG00000045319.13, exon 1 of 4) protein_coding-exon (ENSMUSG00000045319.13, exon 1 of 4) 225 ENSMUSG00000045319.13 ENSMUSG00000045319 ENSMUST00000194054 Proser2 protein_coding Interval_56613 chr14 120854546 120856178 + 0 NA Intergenic Intergenic 28204 ENSMUSG00000115028.1 ENSMUSG00000115028 ENSMUST00000228417 Gm9391 processed_pseudogene Interval_21629 chr11 3335566 3336243 + 0 NA intron (ENSMUSG00000034614.14, intron 4 of 4) protein_coding-intron (ENSMUSG00000034614.14, intron 5 of 5) -4726 ENSMUSG00000053263.3 ENSMUSG00000053263 ENSMUST00000155332 Gm12592 processed_transcript Interval_72565 chr17 30690397 30690585 + 0 NA intron (ENSMUSG00000033826.10, intron 20 of 90) protein_coding-intron (ENSMUSG00000033826.10, intron 22 of 92) 19851 ENSMUSG00000033826.10 ENSMUSG00000033826 ENSMUST00000235567 Dnah8 protein_coding Interval_109990 chr3 152339754 152340738 + 0 NA intron (ENSMUSG00000054942.13, intron 1 of 1) protein_coding-intron (ENSMUSG00000054942.13, intron 1 of 13) 138 ENSMUSG00000054942.13 ENSMUSG00000054942 ENSMUST00000200241 Miga1 protein_coding Interval_26637 chr11 59377530 59378241 + 0 NA intron (ENSMUSG00000086910.1, intron 1 of 2) antisense-intron (ENSMUSG00000086910.1, intron 1 of 2) -2228 ENSMUSG00000049291.6 ENSMUSG00000049291 ENSMUST00000061481 Prss38 protein_coding Interval_95873 chr2 117623955 117624405 + 0 NA Intergenic Intergenic 179484 ENSMUSG00000101394.1 ENSMUSG00000101394 ENSMUST00000191321 Gm28183 lincRNA Interval_19272 chr10 95928277 95928527 + 0 NA Intergenic Intergenic -12248 ENSMUSG00000036499.9 ENSMUSG00000036499 ENSMUST00000218517 Eea1 protein_coding Interval_171660 chr9 120001938 120002574 + 0 NA intron (ENSMUSG00000052336.7, intron 2 of 2) protein_coding-intron (ENSMUSG00000052336.7, intron 2 of 2) -1781 ENSMUSG00000111369.1 ENSMUSG00000111369 ENSMUST00000216943 Gm47043 lincRNA Interval_116161 chr4 108271911 108273384 + 0 NA intron (ENSMUSG00000034636.9, intron 1 of 13) protein_coding-intron (ENSMUSG00000034636.9, intron 1 of 13) -30609 ENSMUSG00000034636.9 ENSMUSG00000034636 ENSMUST00000130508 Zyg11b protein_coding Interval_85234 chr19 24072813 24073736 + 0 NA Intergenic Intergenic 8481 ENSMUSG00000096796.1 ENSMUSG00000096796 ENSMUST00000178667 1700021P04Rik lincRNA Interval_152047 chr7 128563484 128563938 + 0 NA Intergenic Intergenic 24779 ENSMUSG00000108614.1 ENSMUSG00000108614 ENSMUST00000206512 2610306O10Rik TEC Interval_93380 chr2 72522510 72523803 + 0 NA Intergenic Intergenic -22056 ENSMUSG00000081538.1 ENSMUSG00000081538 ENSMUST00000118906 Rps13-ps8 processed_pseudogene Interval_19552 chr10 103034827 103036707 + 0 NA Intergenic Intergenic -5423 ENSMUSG00000090638.1 ENSMUSG00000090638 ENSMUST00000170026 Gm17028 lincRNA Interval_55706 chr14 99168589 99169484 + 0 NA intron (ENSMUSG00000022064.10, intron 10 of 13) protein_coding-intron (ENSMUSG00000022064.10, intron 10 of 17) 57359 ENSMUSG00000115071.1 ENSMUSG00000115071 ENSMUST00000226897 Gm49026 TEC Interval_82648 chr18 75610177 75610980 + 0 NA intron (ENSMUSG00000052928.9, intron 5 of 11) protein_coding-intron (ENSMUSG00000052928.9, intron 5 of 11) 26695 ENSMUSG00000052928.9 ENSMUSG00000052928 ENSMUST00000235147 Ctif protein_coding Interval_36689 chr12 52088345 52088569 + 0 NA Intergenic Intergenic 9443 ENSMUSG00000112063.1 ENSMUSG00000112063 ENSMUST00000218420 Gm32220 processed_pseudogene Interval_69223 chr16 91480284 91480910 + 0 NA Intergenic Intergenic -4719 ENSMUSG00000022967.13 ENSMUSG00000022967 ENSMUST00000232453 Ifnar1 protein_coding Interval_59528 chr15 55048142 55048327 + 0 NA TTS (ENSMUSG00000037343.8) protein_coding-TTS (ENSMUSG00000037343.8) -25452 ENSMUSG00000037343.8 ENSMUSG00000037343 ENSMUST00000227254 Taf2 protein_coding Interval_138679 chr6 91111158 91112061 + 0 NA intron (ENSMUSG00000030091.17, intron 1 of 39) protein_coding-intron (ENSMUSG00000030091.17, intron 1 of 39) 9326 ENSMUSG00000107882.1 ENSMUSG00000107882 ENSMUST00000204082 Gm44278 lincRNA Interval_134901 chr6 33352273 33352461 + 0 NA intron (ENSMUSG00000029763.17, intron 2 of 4) protein_coding-intron (ENSMUSG00000029763.17, intron 7 of 17) 18950 ENSMUSG00000029763.17 ENSMUSG00000029763 ENSMUST00000134653 Exoc4 protein_coding Interval_33859 chr11 119046603 119048690 + 0 NA Intergenic Intergenic -6735 ENSMUSG00000025578.9 ENSMUSG00000025578 ENSMUST00000143831 Cbx8 protein_coding Interval_87345 chr19 47852021 47852568 + 0 NA intron (ENSMUSG00000044948.17, intron 1 of 13) protein_coding-intron (ENSMUSG00000044948.17, intron 1 of 13) -2744 ENSMUSG00000025068.8 ENSMUSG00000025068 ENSMUST00000143694 Gsto1 protein_coding Interval_139492 chr6 100525736 100528370 + 0 NA promoter-TSS (ENSMUSG00000101553.1) lincRNA-promoter-TSS (ENSMUSG00000101553.1) -347 ENSMUSG00000101553.1 ENSMUSG00000101553 ENSMUST00000187986 1700049E22Rik lincRNA Interval_93949 chr2 79847230 79848098 + 0 NA intron (ENSMUSG00000059173.19, intron 13 of 15) protein_coding-intron (ENSMUSG00000059173.19, intron 14 of 15) 61073 ENSMUSG00000034683.12 ENSMUSG00000034683 ENSMUST00000144432 Ppp1r1c protein_coding Interval_83006 chr18 80322145 80323334 + 0 NA promoter-TSS (ENSMUSG00000097593.2) antisense-promoter-TSS (ENSMUSG00000097593.2) -596 ENSMUSG00000097593.2 ENSMUSG00000097593 ENSMUST00000181877 Gm26676 antisense Interval_100234 chr2 167824768 167825340 + 0 NA Intergenic Intergenic 8592 ENSMUSG00000087684.1 ENSMUSG00000087684 ENSMUST00000143649 1200007C13Rik lincRNA Interval_123537 chr5 33324349 33324993 + 0 NA Intergenic Intergenic -13521 ENSMUSG00000092275.1 ENSMUSG00000092275 ENSMUST00000174768 Gm20465 lincRNA Interval_68987 chr16 89954043 89954949 + 0 NA intron (ENSMUSG00000002489.16, intron 2 of 27) protein_coding-intron (ENSMUSG00000002489.16, intron 2 of 27) -135487 ENSMUSG00000116536.1 ENSMUSG00000116536 ENSMUST00000232386 Gm2805 processed_pseudogene Interval_60852 chr15 77152740 77154439 + 0 NA promoter-TSS (ENSMUSG00000033565.18) protein_coding-promoter-TSS (ENSMUSG00000033565.18) 24675 ENSMUSG00000116185.1 ENSMUSG00000116185 ENSMUST00000230993 Gm49411 TEC Interval_85857 chr19 32436411 32436844 + 0 NA Intergenic Intergenic 4397 ENSMUSG00000118329.1 ENSMUSG00000118329 ENSMUST00000235317 Gm9563 processed_pseudogene Interval_18648 chr10 88787184 88787446 + 0 NA intron (ENSMUSG00000004356.8, intron 26 of 61) protein_coding-intron (ENSMUSG00000004356.8, intron 26 of 61) 39468 ENSMUSG00000004356.8 ENSMUSG00000004356 ENSMUST00000220439 Utp20 protein_coding Interval_127192 chr5 100991196 100993024 + 0 NA Intergenic Intergenic -78403 ENSMUSG00000106255.1 ENSMUSG00000106255 ENSMUST00000199211 Gm36793 lincRNA Interval_165735 chr9 51993506 51993773 + 0 NA Intergenic Intergenic 9642 ENSMUSG00000098076.1 ENSMUSG00000098076 ENSMUST00000182467 Gm6981 processed_pseudogene Interval_164594 chr9 39674912 39675435 + 0 NA Intergenic Intergenic 7968 ENSMUSG00000064110.2 ENSMUSG00000064110 ENSMUST00000073433 Olfr963 protein_coding Interval_141446 chr6 128327331 128328306 + 0 NA intron (ENSMUSG00000001521.12, intron 5 of 10) protein_coding-intron (ENSMUSG00000001521.12, intron 5 of 10) 14461 ENSMUSG00000053173.12 ENSMUSG00000053173 ENSMUST00000118863 Rpl18-ps2 processed_pseudogene Interval_34542 chr12 4981670 4983724 + 0 NA intron (ENSMUSG00000052812.5, intron 17 of 30) protein_coding-intron (ENSMUSG00000052812.5, intron 17 of 30) 645 ENSMUSG00000052812.5 ENSMUSG00000052812 ENSMUST00000220408 Atad2b protein_coding Interval_111495 chr4 22153795 22154031 + 0 NA Intergenic Intergenic -36381 ENSMUSG00000082490.1 ENSMUSG00000082490 ENSMUST00000117612 Gm11880 processed_pseudogene Interval_5721 chr1 91227296 91228208 + 0 NA Intergenic Intergenic -22904 ENSMUSG00000034343.14 ENSMUSG00000034343 ENSMUST00000185697 Ube2f protein_coding Interval_132321 chr5 144163890 144164109 + 0 NA intron (ENSMUSG00000038970.7, intron 7 of 13) protein_coding-intron (ENSMUSG00000038970.7, intron 7 of 13) -26287 ENSMUSG00000052271.7 ENSMUSG00000052271 ENSMUST00000060747 Bhlha15 protein_coding Interval_146361 chr7 45519328 45519585 + 0 NA intron (ENSMUSG00000023467.18, intron 5 of 10) protein_coding-intron (ENSMUSG00000023467.18, intron 8 of 12) 4313 ENSMUSG00000040435.12 ENSMUSG00000040435 ENSMUST00000167273 Ppp1r15a protein_coding Interval_24709 chr11 36027644 36028904 + 0 NA intron (ENSMUSG00000049336.16, intron 25 of 28) protein_coding-intron (ENSMUSG00000049336.16, intron 25 of 28) 32220 ENSMUSG00000081571.1 ENSMUSG00000081571 ENSMUST00000117261 Gm12125 processed_pseudogene Interval_87363 chr19 47952187 47953208 + 0 NA intron (ENSMUSG00000046585.9, intron 5 of 17) protein_coding-intron (ENSMUSG00000046585.9, intron 5 of 17) 15022 ENSMUSG00000046585.9 ENSMUSG00000046585 ENSMUST00000066308 Cfap58 protein_coding Interval_4072 chr1 67377344 67377865 + 0 NA Intergenic Intergenic 120380 ENSMUSG00000077745.1 ENSMUSG00000077745 ENSMUST00000104557 Gm26342 snoRNA Interval_49411 chr13 111787998 111789405 + 0 NA intron (ENSMUSG00000021754.17, intron 1 of 19) protein_coding-intron (ENSMUSG00000021754.17, intron 1 of 19) -21767 ENSMUSG00000085204.1 ENSMUSG00000085204 ENSMUST00000153958 Gm15327 processed_transcript Interval_11626 chr1 183426642 183427024 + 0 NA intron (ENSMUSG00000053461.9, intron 4 of 8) protein_coding-intron (ENSMUSG00000053461.9, intron 4 of 8) 6178 ENSMUSG00000104022.1 ENSMUSG00000104022 ENSMUST00000192860 Gm37214 sense_intronic Interval_109764 chr3 146722589 146722835 + 0 NA Intergenic Intergenic 26493 ENSMUSG00000105529.1 ENSMUSG00000105529 ENSMUST00000198038 Gm9480 processed_pseudogene Interval_141988 chr6 136388326 136390592 + 0 NA Intergenic Intergenic 5731 ENSMUSG00000083916.2 ENSMUSG00000083916 ENSMUST00000118247 Gm15476 processed_pseudogene Interval_152102 chr7 129399566 129400886 + 0 NA exon (ENSMUSG00000108713.1, exon 2 of 2) lincRNA-exon (ENSMUSG00000108713.1, exon 2 of 2) 2864 ENSMUSG00000108713.1 ENSMUSG00000108713 ENSMUST00000206093 Gm33027 lincRNA Interval_121581 chr5 3595703 3596934 + 0 NA promoter-TSS (ENSMUSG00000040302.17) protein_coding-promoter-TSS (ENSMUSG00000040302.17) -259 ENSMUSG00000040302.17 ENSMUSG00000040302 ENSMUST00000121877 Rbm48 protein_coding Interval_54708 chr14 73495865 73496074 + 0 NA Intergenic Intergenic 2876 ENSMUSG00000115530.1 ENSMUSG00000115530 ENSMUST00000226353 Gm4266 processed_pseudogene Interval_122929 chr5 27429991 27430733 + 0 NA intron (ENSMUSG00000061576.15, intron 3 of 3) protein_coding-intron (ENSMUSG00000061576.15, intron 3 of 25) 71000 ENSMUSG00000048703.9 ENSMUSG00000048703 ENSMUST00000124535 Speer4b protein_coding Interval_9067 chr1 153376299 153377221 + 0 NA Intergenic Intergenic 37473 ENSMUSG00000073538.10 ENSMUSG00000073538 ENSMUST00000188717 E330020D12Rik processed_transcript Interval_2152 chr1 36744130 36744963 + 0 NA exon (ENSMUSG00000102416.4, exon 2 of 4) protein_coding-exon (ENSMUSG00000102416.4, exon 2 of 4) 246 ENSMUSG00000104237.1 ENSMUSG00000104237 ENSMUST00000193853 Gm33533 lincRNA Interval_52913 chr14 52019427 52020833 + 0 NA promoter-TSS (ENSMUSG00000049295.17) protein_coding-promoter-TSS (ENSMUSG00000049295.17) 54 ENSMUSG00000115454.1 ENSMUSG00000115454 ENSMUST00000226970 Gm49086 antisense Interval_28201 chr11 74261980 74262317 + 0 NA intron (ENSMUSG00000070375.7, intron 1 of 1) transcribed_unprocessed_pseudogene-intron (ENSMUSG00000081864.2, intron 1 of 1) 2340 ENSMUSG00000070375.7 ENSMUSG00000070375 ENSMUST00000133561 Olfr406 protein_coding Interval_23553 chr11 23334076 23334770 + 0 NA intron (ENSMUSG00000056342.16, intron 3 of 79) protein_coding-intron (ENSMUSG00000056342.16, intron 3 of 79) 27528 ENSMUSG00000056342.16 ENSMUSG00000056342 ENSMUST00000125701 Usp34 protein_coding Interval_156138 chr8 45043966 45045162 + 0 NA promoter-TSS (ENSMUSG00000070047.14) protein_coding-promoter-TSS (ENSMUSG00000070047.14) 17889 ENSMUSG00000066158.7 ENSMUSG00000066158 ENSMUST00000166107 AY512931 lincRNA Interval_7695 chr1 133101085 133102562 + 0 NA intron (ENSMUSG00000026447.17, intron 28 of 32) protein_coding-intron (ENSMUSG00000026447.17, intron 28 of 32) -29521 ENSMUSG00000046062.5 ENSMUSG00000046062 ENSMUST00000122956 Ppp1r15b protein_coding Interval_69069 chr16 90409662 90410486 + 0 NA intron (ENSMUSG00000053414.8, intron 1 of 10) protein_coding-intron (ENSMUSG00000053414.8, intron 1 of 10) 9530 ENSMUSG00000053414.8 ENSMUSG00000053414 ENSMUST00000231603 Hunk protein_coding Interval_78167 chr18 9598183 9598423 + 0 NA Intergenic Intergenic -16011 ENSMUSG00000088996.2 ENSMUSG00000088996 ENSMUST00000158371 Gm22765 snoRNA Interval_142176 chr6 137807705 137807940 + 0 NA intron (ENSMUSG00000030225.11, intron 6 of 7) protein_coding-intron (ENSMUSG00000030225.11, intron 6 of 8) -27735 ENSMUSG00000030225.11 ENSMUSG00000030225 ENSMUST00000204723 Dera protein_coding Interval_28337 chr11 75272546 75274454 + 0 NA Intergenic Intergenic 45108 ENSMUSG00000106179.1 ENSMUSG00000106179 ENSMUST00000198372 Gm47300 miRNA Interval_93216 chr2 71221144 71221877 + 0 NA intron (ENSMUSG00000027012.15, intron 3 of 3) protein_coding-intron (ENSMUSG00000027012.15, intron 3 of 15) 9506 ENSMUSG00000027012.15 ENSMUSG00000027012 ENSMUST00000138613 Dync1i2 protein_coding Interval_87502 chr19 53079950 53080192 + 0 NA promoter-TSS (ENSMUSG00000099988.7) processed_transcript-promoter-TSS (ENSMUSG00000099988.7) 3828 ENSMUSG00000099988.7 ENSMUSG00000099988 ENSMUST00000236249 1700054A03Rik processed_transcript Interval_57773 chr15 19454833 19455364 + 0 NA exon (ENSMUSG00000115516.1, exon 1 of 1) processed_pseudogene-exon (ENSMUSG00000115516.1, exon 1 of 1) 1254 ENSMUSG00000115516.1 ENSMUSG00000115516 ENSMUST00000226898 Gm8341 processed_pseudogene Interval_59980 chr15 62567697 62568102 + 0 NA promoter-TSS (ENSMUSG00000115862.1) lincRNA-promoter-TSS (ENSMUSG00000115862.1) -76 ENSMUSG00000115862.1 ENSMUSG00000115862 ENSMUST00000230029 Gm41333 lincRNA Interval_109643 chr3 145651395 145654188 + 0 NA TTS (ENSMUSG00000097183.2) lincRNA-TTS (ENSMUSG00000097183.2) 697 ENSMUSG00000097183.2 ENSMUSG00000097183 ENSMUST00000197148 Gm17501 lincRNA Interval_94592 chr2 92484990 92486918 + 0 NA intron (ENSMUSG00000085261.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000085261.1, intron 1 of 1) 2028 ENSMUSG00000085261.1 ENSMUSG00000085261 ENSMUST00000141341 Gm13814 lincRNA Interval_110372 chr3 157541286 157541507 + 0 NA exon (ENSMUSG00000028180.18, exon 1 of 1) protein_coding-exon (ENSMUSG00000028180.18, exon 1 of 1) -2883 ENSMUSG00000065431.1 ENSMUSG00000065431 ENSMUST00000083497 Mir186 miRNA Interval_117172 chr4 120215938 120217382 + 0 NA Intergenic Intergenic 55454 ENSMUSG00000028635.7 ENSMUSG00000028635 ENSMUST00000030384 Edn2 protein_coding Interval_92073 chr2 52997691 52999805 + 0 NA intron (ENSMUSG00000036053.17, intron 1 of 26) protein_coding-intron (ENSMUSG00000036053.17, intron 1 of 26) 140888 ENSMUSG00000036053.17 ENSMUSG00000036053 ENSMUST00000050719 Fmnl2 protein_coding Interval_32222 chr11 106253547 106254797 + 0 NA promoter-TSS (ENSMUSG00000020706.13) protein_coding-promoter-TSS (ENSMUSG00000020706.13) -1618 ENSMUSG00000020706.13 ENSMUSG00000020706 ENSMUST00000143884 Ftsj3 protein_coding Interval_131371 chr5 136765830 136766613 + 0 NA intron (ENSMUSG00000004415.15, intron 3 of 3) protein_coding-intron (ENSMUSG00000004415.15, intron 3 of 12) 68442 ENSMUSG00000005474.9 ENSMUSG00000005474 ENSMUST00000197849 Myl10 protein_coding Interval_73037 chr17 34296043 34296537 + 0 NA intron (ENSMUSG00000092415.2, intron 2 of 2) antisense-intron (ENSMUSG00000092415.2, intron 2 of 2) -8499 ENSMUSG00000036594.15 ENSMUSG00000036594 ENSMUST00000165139 H2-Aa protein_coding Interval_5522 chr1 89525838 89526453 + 0 NA intron (ENSMUSG00000055013.16, intron 1 of 16) protein_coding-intron (ENSMUSG00000055013.16, intron 1 of 17) -37215 ENSMUSG00000088371.1 ENSMUSG00000088371 ENSMUST00000157746 Gm25180 rRNA Interval_78449 chr18 12909490 12909759 + 0 NA intron (ENSMUSG00000044252.18, intron 7 of 7) protein_coding-intron (ENSMUSG00000044252.18, intron 7 of 27) 11197 ENSMUSG00000080866.1 ENSMUSG00000080866 ENSMUST00000118252 Gm5687 processed_pseudogene Interval_142602 chr6 143967912 143969017 + 0 NA intron (ENSMUSG00000041540.16, intron 6 of 13) protein_coding-intron (ENSMUSG00000041540.16, intron 6 of 14) 22403 ENSMUSG00000107796.1 ENSMUSG00000107796 ENSMUST00000204049 Gm44068 TEC Interval_110861 chr4 9125103 9125923 + 0 NA Intergenic Intergenic -84490 ENSMUSG00000075958.1 ENSMUSG00000075958 ENSMUST00000082782 Gm23423 snRNA Interval_56207 chr14 112474988 112475873 + 0 NA Intergenic Intergenic -5937 ENSMUSG00000058953.3 ENSMUSG00000058953 ENSMUST00000077551 Gm4822 processed_pseudogene Interval_64880 chr16 16929042 16929307 + 0 NA Intergenic Intergenic -3687 ENSMUSG00000116703.1 ENSMUSG00000116703 ENSMUST00000231540 Gm46540 processed_pseudogene Interval_117922 chr4 127072454 127072787 + 0 NA Intergenic Intergenic -4822 ENSMUSG00000042408.13 ENSMUSG00000042408 ENSMUST00000125160 Zmym6 protein_coding Interval_54425 chr14 69248817 69250418 + 0 NA exon (ENSMUSG00000034248.7, exon 2 of 4) protein_coding-exon (ENSMUSG00000034248.7, exon 2 of 4) -9529 ENSMUSG00000098248.1 ENSMUSG00000098248 ENSMUST00000183398 Gm27222 antisense Interval_49398 chr13 111719142 111720361 + 0 NA Intergenic Intergenic 4583 ENSMUSG00000084217.2 ENSMUSG00000084217 ENSMUST00000121682 Gm15488 unitary_pseudogene Interval_166154 chr9 57130386 57131626 + 0 NA promoter-TSS (ENSMUSG00000032295.15) protein_coding-promoter-TSS (ENSMUSG00000032295.15) -108 ENSMUSG00000086728.2 ENSMUSG00000086728 ENSMUST00000142077 Man2c1os antisense Interval_166176 chr9 57268248 57269397 + 0 NA Intergenic Intergenic -7313 ENSMUSG00000032300.7 ENSMUSG00000032300 ENSMUST00000217657 1700017B05Rik protein_coding Interval_102558 chr3 27758104 27758586 + 0 NA Intergenic Intergenic -47947 ENSMUSG00000039286.12 ENSMUSG00000039286 ENSMUST00000193779 Fndc3b protein_coding Interval_92554 chr2 60600682 60601137 + 0 NA intron (ENSMUSG00000026971.15, intron 14 of 14) protein_coding-intron (ENSMUSG00000026971.15, intron 17 of 17) -4615 ENSMUSG00000083195.1 ENSMUSG00000083195 ENSMUST00000118026 Gm13567 processed_pseudogene Interval_153740 chr8 5994269 5995257 + 0 NA promoter-TSS (ENSMUSG00000109069.1) processed_pseudogene-promoter-TSS (ENSMUSG00000109069.1) -40 ENSMUSG00000109069.1 ENSMUSG00000109069 ENSMUST00000208561 Gm2734 processed_pseudogene Interval_55581 chr14 93532921 93533539 + 0 NA intron (ENSMUSG00000055421.8, intron 2 of 3) protein_coding-intron (ENSMUSG00000055421.8, intron 2 of 3) -85616 ENSMUSG00000115023.1 ENSMUSG00000115023 ENSMUST00000228155 Gm48967 TEC Interval_73951 chr17 45642424 45643202 + 0 NA TTS (ENSMUSG00000058626.16) protein_coding-TTS (ENSMUSG00000058626.16) 16484 ENSMUSG00000058626.16 ENSMUSG00000058626 ENSMUST00000151350 Capn11 protein_coding Interval_115758 chr4 103408910 103410665 + 0 NA intron (ENSMUSG00000086136.1, intron 3 of 3) lincRNA-intron (ENSMUSG00000086136.1, intron 1 of 2) 27287 ENSMUSG00000086136.1 ENSMUSG00000086136 ENSMUST00000150345 Gm12718 lincRNA Interval_21624 chr11 3304985 3305180 + 0 NA TTS (ENSMUSG00000053263.3) processed_transcript-TTS (ENSMUSG00000053263.3) -3914 ENSMUSG00000084941.1 ENSMUSG00000084941 ENSMUST00000152576 Gm11944 processed_transcript Interval_10980 chr1 177737274 177737566 + 0 NA intron (ENSMUSG00000015962.5, intron 2 of 5) protein_coding-intron (ENSMUSG00000015962.5, intron 2 of 5) 7606 ENSMUSG00000015962.5 ENSMUSG00000015962 ENSMUST00000016106 1700016C15Rik protein_coding Interval_169255 chr9 95857273 95858516 + 0 NA promoter-TSS (ENSMUSG00000096655.2) antisense-promoter-TSS (ENSMUSG00000096655.2) 188 ENSMUSG00000032409.15 ENSMUSG00000032409 ENSMUST00000186524 Atr protein_coding Interval_51186 chr14 24532150 24532756 + 0 NA Intergenic Intergenic 41735 ENSMUSG00000025290.17 ENSMUSG00000025290 ENSMUST00000224699 Rps24 protein_coding Interval_98731 chr2 154551938 154553189 + 0 NA exon (ENSMUSG00000078129.3, exon 1 of 1) protein_coding-exon (ENSMUSG00000078129.3, exon 1 of 1) 787 ENSMUSG00000078129.3 ENSMUSG00000078129 ENSMUST00000104928 Actl10 protein_coding Interval_114097 chr4 63420106 63421134 + 0 NA intron (ENSMUSG00000039137.18, intron 2 of 6) protein_coding-intron (ENSMUSG00000039137.18, intron 7 of 11) 12702 ENSMUSG00000039137.18 ENSMUSG00000039137 ENSMUST00000140720 Whrn protein_coding Interval_100866 chr2 173007294 173007542 + 0 NA intron (ENSMUSG00000027509.11, intron 5 of 7) protein_coding-intron (ENSMUSG00000027509.11, intron 5 of 11) -5043 ENSMUSG00000027509.11 ENSMUSG00000027509 ENSMUST00000138237 Rae1 protein_coding Interval_2538 chr1 40033442 40034142 + 0 NA Intergenic Intergenic 16576 ENSMUSG00000102985.1 ENSMUSG00000102985 ENSMUST00000193054 4930456G14Rik TEC Interval_61799 chr15 84223371 84224113 + 0 NA Intergenic Intergenic 21900 ENSMUSG00000022437.7 ENSMUSG00000022437 ENSMUST00000229751 Samm50 protein_coding Interval_174018 chrX 129774293 129774948 + 0 NA intron (ENSMUSG00000034480.18, intron 1 of 2) protein_coding-intron (ENSMUSG00000034480.18, intron 1 of 26) 24878 ENSMUSG00000034480.18 ENSMUSG00000034480 ENSMUST00000133457 Diaph2 protein_coding Interval_107804 chr3 115596188 115597086 + 0 NA Intergenic Intergenic 78061 ENSMUSG00000105829.1 ENSMUSG00000105829 ENSMUST00000198229 Gm43669 processed_pseudogene Interval_9653 chr1 160746759 160747231 + 0 NA intron (ENSMUSG00000026721.16, intron 1 of 3) protein_coding-intron (ENSMUSG00000026721.16, intron 1 of 20) -8692 ENSMUSG00000104053.1 ENSMUSG00000104053 ENSMUST00000195297 Gm38126 TEC Interval_137766 chr6 82246413 82246718 + 0 NA Intergenic Intergenic 4391 ENSMUSG00000108224.1 ENSMUSG00000108224 ENSMUST00000204563 Gm31861 processed_pseudogene Interval_131764 chr5 139735873 139736818 + 0 NA promoter-TSS (ENSMUSG00000036718.17) protein_coding-promoter-TSS (ENSMUSG00000036718.17) -3511 ENSMUSG00000036718.17 ENSMUSG00000036718 ENSMUST00000165645 Micall2 protein_coding Interval_125182 chr5 65144633 65145169 + 0 NA intron (ENSMUSG00000054920.12, intron 3 of 9) protein_coding-intron (ENSMUSG00000054920.12, intron 4 of 10) 8599 ENSMUSG00000087748.1 ENSMUSG00000087748 ENSMUST00000157123 Gm25154 rRNA Interval_167039 chr9 64750043 64750381 + 0 NA Intergenic Intergenic -23482 ENSMUSG00000104953.1 ENSMUSG00000104953 ENSMUST00000197528 Gm47308 miRNA Interval_38241 chr12 76592368 76592671 + 0 NA intron (ENSMUSG00000021061.15, intron 32 of 35) protein_coding-intron (ENSMUSG00000021061.15, intron 32 of 35) -8433 ENSMUSG00000021061.15 ENSMUSG00000021061 ENSMUST00000166101 Sptb protein_coding Interval_59096 chr15 43713658 43714233 + 0 NA Intergenic Intergenic -94516 ENSMUSG00000115407.1 ENSMUSG00000115407 ENSMUST00000226778 Gm2140 processed_pseudogene Interval_44162 chr13 41339702 41340445 + 0 NA intron (ENSMUSG00000021365.15, intron 2 of 2) protein_coding-intron (ENSMUSG00000021365.15, intron 2 of 7) -19898 ENSMUSG00000097373.1 ENSMUSG00000097373 ENSMUST00000180728 Gm26877 antisense Interval_28353 chr11 75337064 75337670 + 0 NA intron (ENSMUSG00000000751.13, intron 4 of 6) protein_coding-intron (ENSMUSG00000000751.13, intron 5 of 17) 10928 ENSMUSG00000000751.13 ENSMUSG00000000751 ENSMUST00000149365 Rpa1 protein_coding Interval_32119 chr11 105333892 105334422 + 0 NA intron (ENSMUSG00000020695.14, intron 9 of 29) protein_coding-intron (ENSMUSG00000020695.14, intron 9 of 19) -6675 ENSMUSG00000020695.14 ENSMUSG00000020695 ENSMUST00000151135 Mrc2 protein_coding Interval_77201 chr17 87321496 87322250 + 0 NA intron (ENSMUSG00000036918.16, intron 5 of 18) protein_coding-intron (ENSMUSG00000036918.16, intron 6 of 19) 10179 ENSMUSG00000089701.1 ENSMUSG00000089701 ENSMUST00000161043 Gm15978 antisense Interval_164021 chr9 30975743 30976918 + 0 NA intron (ENSMUSG00000111673.1, intron 2 of 2) antisense-intron (ENSMUSG00000111673.1, intron 2 of 2) 32872 ENSMUSG00000031994.13 ENSMUSG00000031994 ENSMUST00000163037 Adamts8 protein_coding Interval_137298 chr6 71156715 71157826 + 0 NA Intergenic Intergenic -7529 ENSMUSG00000108206.1 ENSMUSG00000108206 ENSMUST00000204123 Gm44427 lincRNA Interval_111953 chr4 32784283 32784583 + 0 NA Intergenic Intergenic -15846 ENSMUSG00000045854.4 ENSMUSG00000045854 ENSMUST00000130321 Lyrm2 protein_coding Interval_92262 chr2 57496722 57497347 + 0 NA Intergenic Intergenic -71325 ENSMUSG00000084338.5 ENSMUSG00000084338 ENSMUST00000121893 Gm13531 processed_pseudogene Interval_53160 chr14 54794745 54796980 + 0 NA Intergenic Intergenic 10234 ENSMUSG00000115626.1 ENSMUSG00000115626 ENSMUST00000227919 Gm17772 processed_pseudogene Interval_50271 chr14 11562512 11563573 + 0 NA intron (ENSMUSG00000021745.14, intron 1 of 3) protein_coding-intron (ENSMUSG00000021745.14, intron 1 of 29) -42272 ENSMUSG00000114849.1 ENSMUSG00000114849 ENSMUST00000224543 Gm48595 lincRNA Interval_168821 chr9 87573964 87574313 + 0 NA Intergenic Intergenic 76026 ENSMUSG00000102683.1 ENSMUSG00000102683 ENSMUST00000193859 Gm37375 TEC Interval_59831 chr15 59605562 59606354 + 0 NA Intergenic Intergenic -12632 ENSMUSG00000115896.1 ENSMUSG00000115896 ENSMUST00000229684 Gm36677 lincRNA Interval_7083 chr1 125559353 125561857 + 0 NA promoter-TSS (ENSMUSG00000026342.10) protein_coding-promoter-TSS (ENSMUSG00000026342.10) 10 ENSMUSG00000026342.10 ENSMUSG00000026342 ENSMUST00000189443 Slc35f5 protein_coding Interval_45357 chr13 54648515 54649107 + 0 NA TTS (ENSMUSG00000025873.16) protein_coding-TTS (ENSMUSG00000025873.16) 27010 ENSMUSG00000025873.16 ENSMUSG00000025873 ENSMUST00000141915 Faf2 protein_coding Interval_129171 chr5 117966278 117966455 + 0 NA Intergenic Intergenic 10194 ENSMUSG00000088085.1 ENSMUSG00000088085 ENSMUST00000157460 Gm25343 snRNA Interval_22540 chr11 11622168 11622344 + 0 NA intron (ENSMUSG00000062511.6, intron 2 of 3) protein_coding-intron (ENSMUSG00000062511.6, intron 2 of 3) 5579 ENSMUSG00000062511.6 ENSMUSG00000062511 ENSMUST00000149910 4930512M02Rik protein_coding Interval_39169 chr12 85561218 85561515 + 0 NA Intergenic Intergenic 31768 ENSMUSG00000114163.1 ENSMUSG00000114163 ENSMUST00000220590 Gm32296 lincRNA Interval_90480 chr2 30717256 30719233 + 0 NA intron (ENSMUSG00000075416.5, intron 2 of 4) processed_transcript-intron (ENSMUSG00000075416.5, intron 2 of 4) 1813 ENSMUSG00000075416.5 ENSMUSG00000075416 ENSMUST00000131207 Gm14488 processed_transcript Interval_118200 chr4 129495683 129496097 + 0 NA intron (ENSMUSG00000086336.1, intron 1 of 2) antisense-intron (ENSMUSG00000086336.1, intron 1 of 2) 4650 ENSMUSG00000078554.2 ENSMUSG00000078554 ENSMUST00000135698 Fam229a protein_coding Interval_71293 chr17 21971959 21972586 + 0 NA intron (ENSMUSG00000053347.15, intron 1 of 5) protein_coding-intron (ENSMUSG00000053347.15, intron 1 of 3) -3478 ENSMUSG00000117025.1 ENSMUSG00000117025 ENSMUST00000232730 Gm49950 processed_pseudogene Interval_135011 chr6 34548425 34549622 + 0 NA Intergenic Intergenic 15470 ENSMUSG00000085187.1 ENSMUSG00000085187 ENSMUST00000125185 Gm13860 lincRNA Interval_19803 chr10 109407572 109407956 + 0 NA Intergenic Intergenic -21277 ENSMUSG00000112253.1 ENSMUSG00000112253 ENSMUST00000219849 Gm47329 processed_pseudogene Interval_144658 chr7 27367514 27368262 + 0 NA intron (ENSMUSG00000011751.16, intron 26 of 35) protein_coding-intron (ENSMUSG00000011751.16, intron 26 of 35) -10469 ENSMUSG00000092367.1 ENSMUSG00000092367 ENSMUST00000126587 Gm20479 protein_coding Interval_160346 chr8 108620747 108622129 + 0 NA intron (ENSMUSG00000038872.10, intron 1 of 3) protein_coding-intron (ENSMUSG00000038872.10, intron 4 of 15) -36843 ENSMUSG00000110613.1 ENSMUSG00000110613 ENSMUST00000211953 Lncbate1 lincRNA Interval_126443 chr5 88595895 88596270 + 0 NA intron (ENSMUSG00000029291.11, intron 1 of 2) protein_coding-intron (ENSMUSG00000029291.11, intron 1 of 12) 41620 ENSMUSG00000070697.4 ENSMUSG00000070697 ENSMUST00000090413 Utp3 protein_coding Interval_19148 chr10 95116441 95117180 + 0 NA exon (ENSMUSG00000112677.1, exon 1 of 1) TEC-exon (ENSMUSG00000112677.1, exon 1 of 1) 431 ENSMUSG00000112677.1 ENSMUSG00000112677 ENSMUST00000219913 Gm48868 TEC Interval_97328 chr2 134481569 134482460 + 0 NA Intergenic Intergenic 72293 ENSMUSG00000027261.2 ENSMUSG00000027261 ENSMUST00000140794 Hao1 protein_coding Interval_121850 chr5 8831550 8831740 + 0 NA TTS (ENSMUSG00000105870.1) TEC-TTS (ENSMUSG00000105870.1) 498 ENSMUSG00000105870.1 ENSMUSG00000105870 ENSMUST00000197499 7330423F06Rik TEC Interval_130234 chr5 125120142 125120868 + 0 NA intron (ENSMUSG00000029478.16, intron 2 of 47) protein_coding-intron (ENSMUSG00000029478.16, intron 1 of 45) 33664 ENSMUSG00000106663.1 ENSMUSG00000106663 ENSMUST00000198978 Gm42839 antisense Interval_1993 chr1 35749271 35751107 + 0 NA Intergenic Intergenic -11413 ENSMUSG00000064601.1 ENSMUSG00000064601 ENSMUST00000082667 Gm25634 snRNA Interval_98894 chr2 155842400 155842912 + 0 NA Intergenic Intergenic -7802 ENSMUSG00000074647.4 ENSMUSG00000074647 ENSMUST00000239423 Fam83c protein_coding Interval_132405 chr5 144743177 144743389 + 0 NA intron (ENSMUSG00000043388.8, intron 6 of 7) protein_coding-intron (ENSMUSG00000043388.8, intron 6 of 7) 18535 ENSMUSG00000043388.8 ENSMUSG00000043388 ENSMUST00000197254 Tmem130 protein_coding Interval_141765 chr6 134308559 134309033 + 0 NA TTS (ENSMUSG00000107666.1) antisense-TTS (ENSMUSG00000107666.1) -62430 ENSMUSG00000108263.1 ENSMUSG00000108263 ENSMUST00000204426 1700051K13Rik TEC Interval_17420 chr10 76506151 76507150 + 0 NA exon (ENSMUSG00000001150.7, exon 24 of 29) protein_coding-exon (ENSMUSG00000001150.7, exon 24 of 29) 25449 ENSMUSG00000001150.7 ENSMUSG00000001150 ENSMUST00000218904 Mcm3ap protein_coding Interval_85320 chr19 24655231 24655784 + 0 NA Intergenic Intergenic -18501 ENSMUSG00000048572.5 ENSMUSG00000048572 ENSMUST00000057243 Tmem252 protein_coding Interval_115436 chr4 98922748 98924632 + 0 NA promoter-TSS (ENSMUSG00000028560.11) protein_coding-promoter-TSS (ENSMUSG00000028560.11) -274 ENSMUSG00000028560.11 ENSMUSG00000028560 ENSMUST00000125104 Usp1 protein_coding Interval_76789 chr17 84070716 84070902 + 0 NA Intergenic Intergenic -7851 ENSMUSG00000117571.1 ENSMUSG00000117571 ENSMUST00000234076 4933433H22Rik lincRNA Interval_116515 chr4 114947311 114947979 + 0 NA Intergenic Intergenic -21632 ENSMUSG00000044518.3 ENSMUSG00000044518 ENSMUST00000050940 Foxe3 protein_coding Interval_117170 chr4 120198613 120199028 + 0 NA Intergenic Intergenic 37614 ENSMUSG00000028635.7 ENSMUSG00000028635 ENSMUST00000030384 Edn2 protein_coding Interval_34894 chr12 13059297 13060408 + 0 NA Intergenic Intergenic -5123 ENSMUSG00000113928.1 ENSMUSG00000113928 ENSMUST00000220969 Gm48209 lincRNA Interval_29012 chr11 79911582 79912070 + 0 NA Intergenic Intergenic 5845 ENSMUSG00000082252.1 ENSMUSG00000082252 ENSMUST00000122438 Gm11204 processed_pseudogene Interval_35874 chr12 31499009 31500440 + 0 NA promoter-TSS (ENSMUSG00000020659.16) protein_coding-promoter-TSS (ENSMUSG00000020659.16) -167 ENSMUSG00000020659.16 ENSMUSG00000020659 ENSMUST00000085487 Cbll1 protein_coding Interval_27828 chr11 70254441 70255968 + 0 NA exon (ENSMUSG00000000320.10, exon 1 of 14) protein_coding-exon (ENSMUSG00000000320.10, exon 1 of 14) 137 ENSMUSG00000000320.10 ENSMUSG00000000320 ENSMUST00000108574 Alox12 protein_coding Interval_89615 chr2 23314634 23314863 + 0 NA Intergenic Intergenic -6498 ENSMUSG00000069132.3 ENSMUSG00000069132 ENSMUST00000102945 Nxph2 protein_coding Interval_125892 chr5 75478666 75479025 + 0 NA Intergenic Intergenic -79473 ENSMUSG00000107386.1 ENSMUSG00000107386 ENSMUST00000202494 Gm42800 lincRNA Interval_41873 chr13 3746746 3747790 + 0 NA Intergenic Intergenic -12557 ENSMUSG00000113759.1 ENSMUSG00000113759 ENSMUST00000223157 Gm47695 lincRNA Interval_113376 chr4 53918897 53919880 + 0 NA Intergenic Intergenic 13692 ENSMUSG00000077418.1 ENSMUSG00000077418 ENSMUST00000104230 Gm23745 snoRNA Interval_8028 chr1 135294659 135295044 + 0 NA TTS (ENSMUSG00000062580.9) protein_coding-TTS (ENSMUSG00000062580.9) 14988 ENSMUSG00000062580.9 ENSMUSG00000062580 ENSMUST00000125454 Timm17a protein_coding Interval_135691 chr6 43439052 43439236 + 0 NA intron (ENSMUSG00000029735.17, intron 6 of 7) protein_coding-intron (ENSMUSG00000029735.17, intron 7 of 8) -28835 ENSMUSG00000107709.1 ENSMUSG00000107709 ENSMUST00000203260 9430018G01Rik antisense Interval_165703 chr9 51161520 51162308 + 0 NA intron (ENSMUSG00000110266.1, intron 1 of 30) protein_coding-intron (ENSMUSG00000110266.1, intron 1 of 30) 3603 ENSMUSG00000110266.1 ENSMUSG00000110266 ENSMUST00000210433 Gm32742 protein_coding Interval_4396 chr1 73826034 73827043 + 0 NA intron (ENSMUSG00000101344.1, intron 2 of 7) lincRNA-intron (ENSMUSG00000101344.1, intron 2 of 7) 15379 ENSMUSG00000101344.1 ENSMUSG00000101344 ENSMUST00000188600 Gm29183 lincRNA Interval_28438 chr11 75876505 75876869 + 0 NA intron (ENSMUSG00000020847.15, intron 5 of 8) protein_coding-intron (ENSMUSG00000020847.15, intron 4 of 7) 15718 ENSMUSG00000087322.1 ENSMUSG00000087322 ENSMUST00000135873 Gm16075 antisense Interval_174120 chrX 135752848 135753092 + 0 NA intron (ENSMUSG00000043384.15, intron 5 of 9) protein_coding-intron (ENSMUSG00000043384.15, intron 4 of 10) 6254 ENSMUSG00000106264.1 ENSMUSG00000106264 ENSMUST00000196502 Mir7646 miRNA Interval_134140 chr6 21787299 21787691 + 0 NA intron (ENSMUSG00000029669.14, intron 6 of 6) protein_coding-intron (ENSMUSG00000029669.14, intron 8 of 8) 64333 ENSMUSG00000029669.14 ENSMUSG00000029669 ENSMUST00000202353 Tspan12 protein_coding Interval_18262 chr10 84410073 84411424 + 0 NA intron (ENSMUSG00000020032.14, intron 1 of 6) protein_coding-intron (ENSMUSG00000020032.14, intron 1 of 6) -18360 ENSMUSG00000020032.14 ENSMUSG00000020032 ENSMUST00000129355 Nuak1 protein_coding Interval_124087 chr5 38201330 38201551 + 0 NA intron (ENSMUSG00000029127.15, intron 5 of 5) protein_coding-intron (ENSMUSG00000029127.15, intron 7 of 7) 2357 ENSMUSG00000029127.15 ENSMUSG00000029127 ENSMUST00000137577 Zbtb49 protein_coding Interval_89437 chr2 20672947 20674050 + 0 NA intron (ENSMUSG00000036617.17, intron 5 of 5) protein_coding-intron (ENSMUSG00000036617.17, intron 4 of 18) 39736 ENSMUSG00000086418.1 ENSMUSG00000086418 ENSMUST00000137186 Gm13362 antisense Interval_99947 chr2 166046053 166046723 + 0 NA intron (ENSMUSG00000027678.17, intron 2 of 22) protein_coding-intron (ENSMUSG00000027678.17, intron 2 of 22) -1530 ENSMUSG00000027678.17 ENSMUSG00000027678 ENSMUST00000139394 Ncoa3 protein_coding Interval_145098 chr7 30010990 30011623 + 0 NA intron (ENSMUSG00000074221.12, intron 4 of 7) protein_coding-intron (ENSMUSG00000074221.12, intron 4 of 7) 26050 ENSMUSG00000074221.12 ENSMUSG00000074221 ENSMUST00000177931 Zfp568 protein_coding Interval_37525 chr12 69573600 69575019 + 0 NA Intergenic Intergenic 8801 ENSMUSG00000049882.10 ENSMUSG00000049882 ENSMUST00000238563 Vcpkmt protein_coding Interval_108452 chr3 127363344 127364028 + 0 NA intron (ENSMUSG00000032826.19, intron 1 of 1) protein_coding-intron (ENSMUSG00000032826.19, intron 1 of 14) 30020 ENSMUSG00000105822.1 ENSMUSG00000105822 ENSMUST00000199858 Gm42969 TEC Interval_68072 chr16 64850962 64852709 + 0 NA promoter-TSS (ENSMUSG00000054604.7) protein_coding-promoter-TSS (ENSMUSG00000054604.7) -183 ENSMUSG00000047141.5 ENSMUSG00000047141 ENSMUST00000052588 Zfp654 protein_coding Interval_41170 chr12 111601234 111601580 + 0 NA intron (ENSMUSG00000007411.16, intron 2 of 15) protein_coding-intron (ENSMUSG00000007411.16, intron 2 of 15) -3104 ENSMUSG00000007411.16 ENSMUSG00000007411 ENSMUST00000221841 Mark3 protein_coding Interval_3874 chr1 64078434 64080173 + 0 NA exon (ENSMUSG00000025959.13, exon 3 of 4) protein_coding-exon (ENSMUSG00000025959.13, exon 3 of 4) 649 ENSMUSG00000086836.1 ENSMUSG00000086836 ENSMUST00000149820 Gm13748 antisense Interval_118455 chr4 131760523 131760732 + 0 NA Intergenic Intergenic 37743 ENSMUSG00000028909.17 ENSMUSG00000028909 ENSMUST00000139641 Ptpru protein_coding Interval_8883 chr1 151800019 151800269 + 0 NA intron (ENSMUSG00000043019.12, intron 13 of 20) protein_coding-intron (ENSMUSG00000043019.12, intron 13 of 19) 44684 ENSMUSG00000043019.12 ENSMUSG00000043019 ENSMUST00000191070 Edem3 protein_coding Interval_171952 chr9 122902846 122903684 + 0 NA promoter-TSS (ENSMUSG00000097322.8) processed_transcript-promoter-TSS (ENSMUSG00000097322.8) -119 ENSMUSG00000097322.8 ENSMUSG00000097322 ENSMUST00000216924 A530083I20Rik processed_transcript Interval_164143 chr9 31962241 31962734 + 0 NA intron (ENSMUSG00000111771.1, intron 2 of 3) lincRNA-intron (ENSMUSG00000111771.1, intron 2 of 3) 14141 ENSMUSG00000111166.1 ENSMUSG00000111166 ENSMUST00000213734 Tpi-rs4 processed_pseudogene Interval_168020 chr9 75434577 75436262 + 0 NA Intergenic Intergenic -6105 ENSMUSG00000042487.6 ENSMUSG00000042487 ENSMUST00000213248 Leo1 protein_coding Interval_135345 chr6 38528312 38528565 + 0 NA Intergenic Intergenic -5064 ENSMUSG00000019689.4 ENSMUSG00000019689 ENSMUST00000019833 Fmc1 protein_coding Interval_50428 chr14 12957477 12958671 + 0 NA Intergenic Intergenic -34621 ENSMUSG00000114561.1 ENSMUSG00000114561 ENSMUST00000223657 Gm48515 processed_pseudogene Interval_143794 chr7 16348935 16349264 + 0 NA intron (ENSMUSG00000052833.9, intron 6 of 8) protein_coding-intron (ENSMUSG00000052833.9, intron 6 of 8) 38707 ENSMUSG00000052833.9 ENSMUSG00000052833 ENSMUST00000209749 Sae1 protein_coding Interval_166104 chr9 56634836 56638919 + 0 NA intron (ENSMUSG00000049556.5, intron 6 of 6) protein_coding-intron (ENSMUSG00000049556.5, intron 3 of 3) 30184 ENSMUSG00000097870.2 ENSMUSG00000097870 ENSMUST00000181927 Gm26868 lincRNA Interval_123295 chr5 31179270 31180582 + 0 NA promoter-TSS (ENSMUSG00000101678.3) protein_coding-promoter-TSS (ENSMUSG00000101678.3) -17 ENSMUSG00000106864.3 ENSMUSG00000106864 ENSMUST00000202300 Gtf3c2 protein_coding Interval_75315 chr17 65843468 65843735 + 0 NA Intergenic Intergenic 14653 ENSMUSG00000061950.17 ENSMUSG00000061950 ENSMUST00000162703 Ppp4r1 protein_coding Interval_45617 chr13 56273277 56274268 + 0 NA Intergenic Intergenic -21609 ENSMUSG00000048904.5 ENSMUSG00000048904 ENSMUST00000058475 Neurog1 protein_coding Interval_123594 chr5 33681148 33682034 + 0 NA Intergenic Intergenic 1383 ENSMUSG00000106971.1 ENSMUSG00000106971 ENSMUST00000201254 Gm42965 processed_pseudogene Interval_168471 chr9 81578894 81579368 + 0 NA Intergenic Intergenic -53287 ENSMUSG00000097466.8 ENSMUSG00000097466 ENSMUST00000183781 D430036J16Rik antisense Interval_68649 chr16 83484038 83484655 + 0 NA Intergenic Intergenic -81181 ENSMUSG00000116533.1 ENSMUSG00000116533 ENSMUST00000232058 Gm49561 processed_pseudogene Interval_163968 chr9 29942885 29944115 + 0 NA intron (ENSMUSG00000059974.10, intron 1 of 1) protein_coding-intron (ENSMUSG00000059974.10, intron 1 of 7) 120219 ENSMUSG00000111175.1 ENSMUSG00000111175 ENSMUST00000214849 Gm19640 processed_pseudogene Interval_98129 chr2 148552181 148552400 + 0 NA Intergenic Intergenic -72421 ENSMUSG00000088870.1 ENSMUSG00000088870 ENSMUST00000158245 Gm25866 snoRNA Interval_86932 chr19 44988568 44990232 + 0 NA promoter-TSS (ENSMUSG00000025207.16) protein_coding-promoter-TSS (ENSMUSG00000025207.16) 139 ENSMUSG00000025207.16 ENSMUSG00000025207 ENSMUST00000179305 Sema4g protein_coding Interval_70572 chr17 12081116 12081739 + 0 NA Intergenic Intergenic -37902 ENSMUSG00000023827.8 ENSMUSG00000023827 ENSMUST00000167905 Agpat4 protein_coding Interval_28884 chr11 79045098 79045686 + 0 NA intron (ENSMUSG00000018334.18, intron 2 of 18) protein_coding-intron (ENSMUSG00000018334.18, intron 3 of 18) 14444 ENSMUSG00000018334.18 ENSMUSG00000018334 ENSMUST00000129463 Ksr1 protein_coding Interval_44812 chr13 48845089 48845880 + 0 NA intron (ENSMUSG00000038025.8, intron 1 of 21) protein_coding-intron (ENSMUSG00000038025.8, intron 1 of 21) -25628 ENSMUSG00000086889.1 ENSMUSG00000086889 ENSMUST00000123212 Phf2os1 antisense Interval_18884 chr10 92307847 92308080 + 0 NA intron (ENSMUSG00000098040.1, intron 2 of 8) lincRNA-intron (ENSMUSG00000098040.1, intron 2 of 8) 49373 ENSMUSG00000111776.1 ENSMUSG00000111776 ENSMUST00000215960 Gm47124 processed_pseudogene Interval_93976 chr2 80412929 80413943 + 0 NA exon (ENSMUSG00000027004.3, exon 6 of 6) protein_coding-exon (ENSMUSG00000027004.3, exon 6 of 6) 18539 ENSMUSG00000085921.1 ENSMUSG00000085921 ENSMUST00000138195 Gm13752 antisense Interval_114486 chr4 80967143 80968342 + 0 NA TTS (ENSMUSG00000099273.1) miRNA-TTS (ENSMUSG00000099273.1) 298 ENSMUSG00000099273.1 ENSMUSG00000099273 ENSMUST00000184920 Gm27452 miRNA Interval_36681 chr12 51985073 51985567 + 0 NA Intergenic Intergenic -9716 ENSMUSG00000112064.1 ENSMUSG00000112064 ENSMUST00000218223 Gm47399 processed_pseudogene Interval_40134 chr12 101871026 101871728 + 0 NA intron (ENSMUSG00000021188.14, intron 9 of 14) protein_coding-intron (ENSMUSG00000021188.14, intron 15 of 20) 4428 ENSMUSG00000093758.1 ENSMUSG00000093758 ENSMUST00000176082 Gm20701 processed_pseudogene Interval_8717 chr1 149858754 149858970 + 0 NA intron (ENSMUSG00000056220.14, intron 12 of 16) protein_coding-intron (ENSMUSG00000056220.14, intron 13 of 17) 17332 ENSMUSG00000077516.1 ENSMUSG00000077516 ENSMUST00000104328 n-R5s219 rRNA Interval_129919 chr5 123063756 123064039 + 0 NA Intergenic Intergenic -2345 ENSMUSG00000080836.1 ENSMUSG00000080836 ENSMUST00000119611 Gm6444 processed_pseudogene Interval_99294 chr2 158734085 158734336 + 0 NA intron (ENSMUSG00000037754.13, intron 1 of 8) protein_coding-intron (ENSMUSG00000037754.13, intron 2 of 10) -5928 ENSMUSG00000093040.1 ENSMUSG00000093040 ENSMUST00000175299 Gm26141 miRNA Interval_115058 chr4 89106151 89106418 + 0 NA intron (ENSMUSG00000085569.1, intron 2 of 3) processed_transcript-intron (ENSMUSG00000085569.1, intron 2 of 3) 21942 ENSMUSG00000085569.1 ENSMUSG00000085569 ENSMUST00000138655 Gm12602 processed_transcript Interval_87239 chr19 47135535 47136061 + 0 NA exon (ENSMUSG00000033033.10, exon 2 of 3) protein_coding-exon (ENSMUSG00000033033.10, exon 2 of 3) 2496 ENSMUSG00000033033.10 ENSMUSG00000033033 ENSMUST00000035822 Calhm2 protein_coding Interval_92792 chr2 65450850 65451975 + 0 NA Intergenic Intergenic -57853 ENSMUSG00000086701.1 ENSMUSG00000086701 ENSMUST00000145994 Gm13595 antisense Interval_106024 chr3 90757027 90757358 + 0 NA Intergenic Intergenic -1540 ENSMUSG00000105892.1 ENSMUSG00000105892 ENSMUST00000197218 Gm35013 processed_pseudogene Interval_168457 chr9 80957229 80958895 + 0 NA intron (ENSMUSG00000097655.3, intron 1 of 3) lincRNA-intron (ENSMUSG00000097655.3, intron 1 of 3) 2626 ENSMUSG00000097655.3 ENSMUSG00000097655 ENSMUST00000181827 Gm26713 lincRNA Interval_10560 chr1 171857145 171858883 + 0 NA intron (ENSMUSG00000038147.13, intron 3 of 8) protein_coding-intron (ENSMUSG00000038147.13, intron 2 of 6) 18317 ENSMUSG00000038147.13 ENSMUSG00000038147 ENSMUST00000042302 Cd84 protein_coding Interval_74127 chr17 46658494 46660129 + 0 NA intron (ENSMUSG00000038545.13, intron 15 of 24) protein_coding-intron (ENSMUSG00000038545.13, intron 16 of 25) 8748 ENSMUSG00000038545.13 ENSMUSG00000038545 ENSMUST00000125949 Cul7 protein_coding Interval_160853 chr8 113837069 113837591 + 0 NA intron (ENSMUSG00000053399.9, intron 3 of 9) protein_coding-intron (ENSMUSG00000053399.9, intron 3 of 22) 7974 ENSMUSG00000053399.9 ENSMUSG00000053399 ENSMUST00000212527 Adamts18 protein_coding Interval_20195 chr10 115617429 115617636 + 0 NA Intergenic Intergenic -17204 ENSMUSG00000112099.1 ENSMUSG00000112099 ENSMUST00000219787 Gm8960 processed_pseudogene Interval_165367 chr9 46701942 46703995 + 0 NA Intergenic Intergenic 11190 ENSMUSG00000111783.1 ENSMUSG00000111783 ENSMUST00000216630 Gm8863 processed_pseudogene Interval_74696 chr17 56016676 56016999 + 0 NA TTS (ENSMUSG00000003200.10) protein_coding-TTS (ENSMUSG00000003200.10) -2293 ENSMUSG00000084755.1 ENSMUSG00000084755 ENSMUST00000131218 Gm16276 processed_pseudogene Interval_112427 chr4 41191985 41194143 + 0 NA exon (ENSMUSG00000036241.3, exon 5 of 5) protein_coding-exon (ENSMUSG00000036241.3, exon 5 of 5) 7013 ENSMUSG00000028433.14 ENSMUSG00000028433 ENSMUST00000140662 Ubap2 protein_coding Interval_138849 chr6 92534436 92535233 + 0 NA promoter-TSS (ENSMUSG00000030020.13) protein_coding-promoter-TSS (ENSMUSG00000030020.13) -26943 ENSMUSG00000098130.1 ENSMUSG00000098130 ENSMUST00000182175 Gm17797 processed_pseudogene Interval_157291 chr8 69063480 69064439 + 0 NA TTS (ENSMUSG00000089995.2) antisense-TTS (ENSMUSG00000089995.2) 19205 ENSMUSG00000089995.2 ENSMUSG00000089995 ENSMUST00000162457 Gm15716 antisense Interval_82591 chr18 75341911 75343488 + 0 NA Intergenic Intergenic 24389 ENSMUSG00000092569.1 ENSMUSG00000092569 ENSMUST00000174338 Gm20544 processed_transcript Interval_166492 chr9 60043236 60043906 + 0 NA intron (ENSMUSG00000032289.15, intron 7 of 16) protein_coding-intron (ENSMUSG00000032289.15, intron 2 of 11) -1392 ENSMUSG00000088090.1 ENSMUSG00000088090 ENSMUST00000157465 Gm23668 rRNA Interval_96511 chr2 125203636 125203948 + 0 NA intron (ENSMUSG00000027202.12, intron 19 of 26) protein_coding-intron (ENSMUSG00000027202.12, intron 19 of 26) 13720 ENSMUSG00000086416.1 ENSMUSG00000086416 ENSMUST00000123574 Gm14002 antisense Interval_157076 chr8 64994906 64995177 + 0 NA Intergenic Intergenic -7210 ENSMUSG00000071089.3 ENSMUSG00000071089 ENSMUST00000210982 Trim75 protein_coding Interval_25323 chr11 46325455 46326891 + 0 NA exon (ENSMUSG00000020395.13, exon 17 of 17) protein_coding-exon (ENSMUSG00000020395.13, exon 17 of 17) -13815 ENSMUSG00000020340.16 ENSMUSG00000020340 ENSMUST00000129474 Cyfip2 protein_coding Interval_73464 chr17 37535148 37535502 + 0 NA Intergenic Intergenic 9365 ENSMUSG00000090675.2 ENSMUSG00000090675 ENSMUST00000097325 Olfr111 protein_coding Interval_173486 chrX 95333586 95333883 + 0 NA Intergenic Intergenic -11845 ENSMUSG00000082371.1 ENSMUSG00000082371 ENSMUST00000118523 Gm3712 processed_pseudogene Interval_136478 chr6 54833308 54833623 + 0 NA intron (ENSMUSG00000058446.14, intron 1 of 3) protein_coding-intron (ENSMUSG00000058446.14, intron 1 of 4) 16195 ENSMUSG00000058446.14 ENSMUSG00000058446 ENSMUST00000127331 Znrf2 protein_coding Interval_17530 chr10 77557765 77558254 + 0 NA exon (ENSMUSG00000000290.13, exon 11 of 16) protein_coding-exon (ENSMUSG00000000290.13, exon 11 of 16) -23714 ENSMUSG00000009291.13 ENSMUSG00000009291 ENSMUST00000167006 Pttg1ip protein_coding Interval_33814 chr11 118709043 118709363 + 0 NA intron (ENSMUSG00000025576.17, intron 2 of 14) protein_coding-intron (ENSMUSG00000025576.17, intron 2 of 14) -82169 ENSMUSG00000085059.1 ENSMUSG00000085059 ENSMUST00000146016 Gm11750 lincRNA Interval_158887 chr8 87715857 87717744 + 0 NA intron (ENSMUSG00000045333.15, intron 3 of 5) protein_coding-intron (ENSMUSG00000045333.15, intron 4 of 6) 80143 ENSMUSG00000089301.1 ENSMUSG00000089301 ENSMUST00000158676 Gm24841 misc_RNA Interval_112157 chr4 35005932 35007214 + 0 NA intron (ENSMUSG00000073910.10, intron 2 of 3) protein_coding-intron (ENSMUSG00000073910.10, intron 2 of 3) 44353 ENSMUSG00000086792.1 ENSMUSG00000086792 ENSMUST00000144419 Gm12364 antisense Interval_72414 chr17 29679156 29679602 + 0 NA exon (ENSMUSG00000024019.18, exon 1 of 4) protein_coding-exon (ENSMUSG00000024019.18, exon 1 of 4) 18765 ENSMUSG00000024019.18 ENSMUSG00000024019 ENSMUST00000234666 Cmtr1 protein_coding Interval_17784 chr10 80056976 80058448 + 0 NA TTS (ENSMUSG00000035673.10) protein_coding-TTS (ENSMUSG00000035673.10) 3247 ENSMUSG00000075706.10 ENSMUSG00000075706 ENSMUST00000136081 Gpx4 protein_coding Interval_142637 chr6 144480534 144481486 + 0 NA promoter-TSS (ENSMUSG00000087157.1) antisense-promoter-TSS (ENSMUSG00000087157.1) -215 ENSMUSG00000087157.1 ENSMUSG00000087157 ENSMUST00000156443 Sox5os2 antisense Interval_128658 chr5 114565195 114565602 + 0 NA Intergenic Intergenic -2619 ENSMUSG00000041930.7 ENSMUSG00000041930 ENSMUST00000130983 Fam222a protein_coding Interval_160090 chr8 106309417 106309628 + 0 NA intron (ENSMUSG00000031906.9, intron 1 of 8) protein_coding-intron (ENSMUSG00000031906.9, intron 1 of 8) 26215 ENSMUSG00000074113.4 ENSMUSG00000074113 ENSMUST00000137706 Gm10629 lincRNA Interval_170659 chr9 109941124 109941649 + 0 NA intron (ENSMUSG00000032479.15, intron 1 of 3) protein_coding-intron (ENSMUSG00000032479.15, intron 1 of 18) -16636 ENSMUSG00000105191.1 ENSMUSG00000105191 ENSMUST00000197587 Gm4644 processed_pseudogene Interval_24356 chr11 32642062 32643594 + 0 NA promoter-TSS (ENSMUSG00000020271.17) protein_coding-promoter-TSS (ENSMUSG00000020271.17) -76 ENSMUSG00000020271.17 ENSMUSG00000020271 ENSMUST00000143290 Fbxw11 protein_coding Interval_156438 chr8 48207057 48207451 + 0 NA Intergenic Intergenic 63731 ENSMUSG00000110480.1 ENSMUSG00000110480 ENSMUST00000212653 Gm32842 processed_pseudogene Interval_81522 chr18 61367676 61368510 + 0 NA intron (ENSMUSG00000033871.14, intron 1 of 11) protein_coding-intron (ENSMUSG00000033871.14, intron 2 of 12) -29720 ENSMUSG00000093026.1 ENSMUSG00000093026 ENSMUST00000175285 Gm25301 miRNA Interval_160022 chr8 105854544 105855691 + 0 NA promoter-TSS (ENSMUSG00000036442.8) protein_coding-promoter-TSS (ENSMUSG00000036442.8) -15 ENSMUSG00000036442.8 ENSMUSG00000036442 ENSMUST00000040445 Thap11 protein_coding Interval_100183 chr2 167518754 167520498 + 0 NA Intergenic Intergenic 15816 ENSMUSG00000082687.1 ENSMUSG00000082687 ENSMUST00000120814 Gm11474 processed_pseudogene Interval_20762 chr10 120826939 120828206 + 0 NA intron (ENSMUSG00000051236.13, intron 2 of 5) protein_coding-intron (ENSMUSG00000051236.13, intron 4 of 6) 22896 ENSMUSG00000051236.13 ENSMUSG00000051236 ENSMUST00000130950 Msrb3 protein_coding Interval_113335 chr4 53519011 53519282 + 0 NA intron (ENSMUSG00000028412.17, intron 3 of 3) protein_coding-intron (ENSMUSG00000028412.17, intron 4 of 15) 45551 ENSMUSG00000084970.1 ENSMUSG00000084970 ENSMUST00000138377 1700060J05Rik antisense Interval_141771 chr6 134367380 134368058 + 0 NA intron (ENSMUSG00000107666.1, intron 3 of 8) antisense-intron (ENSMUSG00000107666.1, intron 3 of 8) -30921 ENSMUSG00000030200.13 ENSMUSG00000030200 ENSMUST00000142612 Bcl2l14 protein_coding Interval_11792 chr1 185466859 185467169 + 0 NA exon (ENSMUSG00000026614.7, exon 4 of 4) protein_coding-exon (ENSMUSG00000026614.7, exon 4 of 4) -11446 ENSMUSG00000097615.1 ENSMUSG00000097615 ENSMUST00000180623 Gm2061 antisense Interval_27465 chr11 68032561 68032895 + 0 NA intron (ENSMUSG00000020903.13, intron 5 of 6) protein_coding-intron (ENSMUSG00000020903.13, intron 6 of 7) 2982 ENSMUSG00000082266.1 ENSMUSG00000082266 ENSMUST00000119506 Gm12303 processed_pseudogene Interval_63722 chr15 103033837 103035988 + 0 NA exon (ENSMUSG00000075394.4, exon 1 of 2) protein_coding-exon (ENSMUSG00000075394.4, exon 1 of 2) 15978 ENSMUSG00000075394.4 ENSMUSG00000075394 ENSMUST00000100164 Hoxc4 protein_coding Interval_43654 chr13 34605846 34606196 + 0 NA Intergenic Intergenic 6225 ENSMUSG00000113185.1 ENSMUSG00000113185 ENSMUST00000221927 Gm47127 lincRNA Interval_10742 chr1 173870152 173871163 + 0 NA TTS (ENSMUSG00000090272.9) protein_coding-TTS (ENSMUSG00000090272.9) -8158 ENSMUSG00000090272.9 ENSMUSG00000090272 ENSMUST00000187636 Mndal protein_coding Interval_37299 chr12 64937301 64938315 + 0 NA Intergenic Intergenic 17024 ENSMUSG00000047227.5 ENSMUSG00000047227 ENSMUST00000220928 Gm527 protein_coding Interval_68163 chr16 66101442 66101651 + 0 NA Intergenic Intergenic 140321 ENSMUSG00000088181.1 ENSMUSG00000088181 ENSMUST00000157556 Gm22217 misc_RNA Interval_134087 chr6 19145264 19145550 + 0 NA Intergenic Intergenic 25938 ENSMUSG00000107349.1 ENSMUSG00000107349 ENSMUST00000201932 Gm6655 processed_pseudogene Interval_78826 chr18 20829504 20830605 + 0 NA exon (ENSMUSG00000033382.15, exon 1 of 1) protein_coding-exon (ENSMUSG00000033382.15, exon 1 of 1) 14538 ENSMUSG00000088549.1 ENSMUSG00000088549 ENSMUST00000157924 Gm24959 snRNA Interval_66079 chr16 31462051 31463105 + 0 NA Intergenic Intergenic -7348 ENSMUSG00000116572.1 ENSMUSG00000116572 ENSMUST00000232608 Gm49695 lincRNA Interval_62776 chr15 96793039 96793713 + 0 NA Intergenic Intergenic -26298 ENSMUSG00000095638.2 ENSMUSG00000095638 ENSMUST00000177677 Gm8888 processed_pseudogene Interval_61171 chr15 79647525 79648027 + 0 NA intron (ENSMUSG00000042564.13, intron 3 of 17) protein_coding-intron (ENSMUSG00000042564.13, intron 3 of 8) 11148 ENSMUSG00000042564.13 ENSMUSG00000042564 ENSMUST00000231126 Fam227a protein_coding Interval_42270 chr13 11442762 11443295 + 0 NA Intergenic Intergenic -16130 ENSMUSG00000077618.1 ENSMUSG00000077618 ENSMUST00000104430 Gm25496 snoRNA Interval_63464 chr15 101233588 101234219 + 0 NA Intergenic Intergenic -8717 ENSMUSG00000097915.2 ENSMUSG00000097915 ENSMUST00000229239 A330009N23Rik antisense Interval_26773 chr11 60366130 60367549 + 0 NA intron (ENSMUSG00000056598.16, intron 4 of 5) protein_coding-intron (ENSMUSG00000056598.16, intron 5 of 6) 13482 ENSMUSG00000056598.16 ENSMUSG00000056598 ENSMUST00000108722 Drc3 protein_coding Interval_148006 chr7 77738492 77740198 + 0 NA Intergenic Intergenic 170975 ENSMUSG00000064940.1 ENSMUSG00000064940 ENSMUST00000083006 Gm23239 snRNA Interval_7566 chr1 132251734 132252062 + 0 NA intron (ENSMUSG00000079330.9, intron 4 of 4) protein_coding-intron (ENSMUSG00000079330.9, intron 3 of 3) -22131 ENSMUSG00000066936.4 ENSMUSG00000066936 ENSMUST00000086544 Gm10188 protein_coding Interval_138554 chr6 89285221 89287354 + 0 NA promoter-TSS (ENSMUSG00000107622.1) lincRNA-promoter-TSS (ENSMUSG00000107622.1) -13080 ENSMUSG00000107622.1 ENSMUSG00000107622 ENSMUST00000204566 4930512J16Rik lincRNA Interval_130456 chr5 127760103 127760427 + 0 NA Intergenic Intergenic -117068 ENSMUSG00000061331.5 ENSMUSG00000061331 ENSMUST00000109542 Gm17132 unprocessed_pseudogene Interval_28722 chr11 77926087 77927048 + 0 NA intron (ENSMUSG00000055045.5, intron 1 of 2) lincRNA-intron (ENSMUSG00000055045.5, intron 1 of 2) 2721 ENSMUSG00000055045.5 ENSMUSG00000055045 ENSMUST00000132487 Gm11190 lincRNA Interval_77365 chr17 88260948 88261736 + 0 NA intron (ENSMUSG00000117351.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000117351.1, intron 1 of 1) 44036 ENSMUSG00000117497.1 ENSMUSG00000117497 ENSMUST00000234925 1700116H05Rik lincRNA Interval_120023 chr4 141408056 141408381 + 0 NA intron (ENSMUSG00000006216.10, intron 14 of 18) protein_coding-intron (ENSMUSG00000006216.10, intron 14 of 19) 7743 ENSMUSG00000006216.10 ENSMUSG00000006216 ENSMUST00000145725 Clcnkb protein_coding Interval_37970 chr12 73505916 73506281 + 0 NA intron (ENSMUSG00000113099.1, intron 2 of 3) lincRNA-intron (ENSMUSG00000113099.1, intron 2 of 3) 2572 ENSMUSG00000113099.1 ENSMUSG00000113099 ENSMUST00000222678 Gm34016 lincRNA Interval_51423 chr14 27404313 27404934 + 0 NA TTS (ENSMUSG00000021895.10) protein_coding-TTS (ENSMUSG00000021895.10) -23773 ENSMUSG00000093034.1 ENSMUSG00000093034 ENSMUST00000175293 Gm23633 miRNA Interval_84789 chr19 16737688 16739015 + 0 NA intron (ENSMUSG00000046230.11, intron 17 of 18) protein_coding-intron (ENSMUSG00000046230.11, intron 17 of 71) 22552 ENSMUSG00000114931.1 ENSMUSG00000114931 ENSMUST00000223692 Gm32256 processed_pseudogene Interval_17814 chr10 80226055 80227219 + 0 NA promoter-TSS (ENSMUSG00000020156.16) protein_coding-promoter-TSS (ENSMUSG00000020156.16) -7623 ENSMUSG00000020156.16 ENSMUSG00000020156 ENSMUST00000136791 Pwwp3a protein_coding Interval_38107 chr12 75684362 75684674 + 0 NA Intergenic Intergenic -14991 ENSMUSG00000045690.8 ENSMUSG00000045690 ENSMUST00000187307 Wdr89 protein_coding Interval_30966 chr11 97470888 97472073 + 0 NA intron (ENSMUSG00000049807.16, intron 11 of 18) protein_coding-intron (ENSMUSG00000049807.16, intron 12 of 18) 28860 ENSMUSG00000047988.1 ENSMUSG00000047988 ENSMUST00000056955 4933428G20Rik protein_coding Interval_148468 chr7 81514707 81515741 + 0 NA Intergenic Intergenic -8326 ENSMUSG00000097277.7 ENSMUSG00000097277 ENSMUST00000181492 2900076A07Rik lincRNA Interval_19761 chr10 108548629 108548847 + 0 NA intron (ENSMUSG00000035864.14, intron 10 of 11) protein_coding-intron (ENSMUSG00000035864.14, intron 9 of 10) 66088 ENSMUSG00000112065.1 ENSMUSG00000112065 ENSMUST00000217917 Gm47466 processed_pseudogene Interval_57565 chr15 12388253 12388657 + 0 NA intron (ENSMUSG00000022197.16, intron 15 of 23) protein_coding-intron (ENSMUSG00000022197.16, intron 15 of 23) 23925 ENSMUSG00000022197.16 ENSMUSG00000022197 ENSMUST00000189746 Pdzd2 protein_coding Interval_10121 chr1 165919165 165919502 + 0 NA intron (ENSMUSG00000026565.18, intron 2 of 16) protein_coding-intron (ENSMUSG00000026565.18, intron 2 of 14) -22285 ENSMUSG00000099008.1 ENSMUSG00000099008 ENSMUST00000184037 Gm17976 processed_pseudogene Interval_120551 chr4 149306767 149308388 + 0 NA promoter-TSS (ENSMUSG00000063077.15) protein_coding-promoter-TSS (ENSMUSG00000063077.15) 115 ENSMUSG00000063077.15 ENSMUSG00000063077 ENSMUST00000132072 Kif1b protein_coding Interval_129574 chr5 121062650 121063367 + 0 NA Intergenic Intergenic -52928 ENSMUSG00000029608.10 ENSMUSG00000029608 ENSMUST00000200792 Rph3a protein_coding Interval_10760 chr1 174394646 174394906 + 0 NA Intergenic Intergenic 3730 ENSMUSG00000059503.2 ENSMUSG00000059503 ENSMUST00000075329 Olfr248 protein_coding Interval_152292 chr7 131465236 131466667 + 0 NA intron (ENSMUSG00000030849.18, intron 2 of 6) protein_coding-intron (ENSMUSG00000030849.18, intron 2 of 6) 6916 ENSMUSG00000108989.1 ENSMUSG00000108989 ENSMUST00000207802 Gm44984 processed_pseudogene Interval_154644 chr8 22258290 22260484 + 0 NA exon (ENSMUSG00000031480.15, exon 5 of 5) protein_coding-exon (ENSMUSG00000031480.15, exon 5 of 5) -24054 ENSMUSG00000031481.8 ENSMUSG00000031481 ENSMUST00000077194 Tpte protein_coding Interval_36342 chr12 41680283 41680585 + 0 NA intron (ENSMUSG00000056899.10, intron 4 of 5) protein_coding-intron (ENSMUSG00000056899.10, intron 5 of 6) -3960 ENSMUSG00000113438.1 ENSMUSG00000113438 ENSMUST00000221651 Gm47369 processed_pseudogene Interval_124708 chr5 53486891 53487516 + 0 NA intron (ENSMUSG00000039191.12, intron 1 of 6) protein_coding-intron (ENSMUSG00000039191.12, intron 1 of 6) 35528 ENSMUSG00000106807.1 ENSMUSG00000106807 ENSMUST00000200950 Gm10441 antisense Interval_107530 chr3 108323025 108323731 + 0 NA intron (ENSMUSG00000068747.14, intron 3 of 20) protein_coding-intron (ENSMUSG00000068747.14, intron 3 of 19) 35497 ENSMUSG00000105358.1 ENSMUSG00000105358 ENSMUST00000198943 Gm43099 TEC Interval_106391 chr3 95865526 95865716 + 0 NA intron (ENSMUSG00000054312.6, intron 2 of 2) protein_coding-intron (ENSMUSG00000054312.6, intron 2 of 2) 5746 ENSMUSG00000054312.6 ENSMUSG00000054312 ENSMUST00000142437 Mrps21 protein_coding Interval_73545 chr17 40201423 40202001 + 0 NA Intergenic Intergenic 6928 ENSMUSG00000031233.6 ENSMUSG00000031233 ENSMUST00000033585 Pgk2 protein_coding Interval_36672 chr12 51909124 51910030 + 0 NA intron (ENSMUSG00000035181.6, intron 11 of 24) protein_coding-intron (ENSMUSG00000035181.6, intron 22 of 35) 30373 ENSMUSG00000035181.6 ENSMUSG00000035181 ENSMUST00000219277 Heatr5a protein_coding Interval_172786 chrX 49054686 49055040 + 0 NA intron (ENSMUSG00000031109.16, intron 4 of 12) protein_coding-intron (ENSMUSG00000031109.16, intron 7 of 15) 25889 ENSMUSG00000031109.16 ENSMUSG00000031109 ENSMUST00000141393 Enox2 protein_coding Interval_173517 chrX 97833486 97834215 + 0 NA Intergenic Intergenic 7471 ENSMUSG00000081923.1 ENSMUSG00000081923 ENSMUST00000117712 Gm9062 processed_pseudogene Interval_89189 chr2 17950053 17950853 + 0 NA Intergenic Intergenic 46505 ENSMUSG00000062651.4 ENSMUSG00000062651 ENSMUST00000105001 H2al2a protein_coding Interval_31046 chr11 97849354 97850789 + 0 NA Intergenic Intergenic 5481 ENSMUSG00000070336.3 ENSMUSG00000070336 ENSMUST00000093939 Fbxo47 protein_coding Interval_39075 chr12 84875481 84877233 + 0 NA exon (ENSMUSG00000002020.15, exon 1 of 36) protein_coding-exon (ENSMUSG00000002020.15, exon 1 of 36) 134 ENSMUSG00000002020.15 ENSMUSG00000002020 ENSMUST00000168699 Ltbp2 protein_coding Interval_160777 chr8 112128768 112129345 + 0 NA Intergenic Intergenic 66551 ENSMUSG00000065700.1 ENSMUSG00000065700 ENSMUST00000083766 Gm22827 snRNA Interval_115271 chr4 95105676 95106989 + 0 NA intron (ENSMUSG00000087366.7, intron 2 of 3) antisense-intron (ENSMUSG00000087366.7, intron 2 of 4) -14913 ENSMUSG00000085377.1 ENSMUSG00000085377 ENSMUST00000156086 4930551L18Rik lincRNA Interval_152062 chr7 128698598 128698819 + 0 NA TTS (ENSMUSG00000048170.14) protein_coding-TTS (ENSMUSG00000048170.14) 6019 ENSMUSG00000081339.1 ENSMUSG00000081339 ENSMUST00000118475 Gm16044 processed_pseudogene Interval_140932 chr6 122819448 122820968 + 0 NA promoter-TSS (ENSMUSG00000003154.15) protein_coding-promoter-TSS (ENSMUSG00000003154.15) 406 ENSMUSG00000097635.2 ENSMUSG00000097635 ENSMUST00000181317 Gm26826 antisense Interval_122717 chr5 24863547 24864678 + 0 NA intron (ENSMUSG00000028944.14, intron 4 of 4) protein_coding-intron (ENSMUSG00000028944.14, intron 15 of 15) -9432 ENSMUSG00000087314.1 ENSMUSG00000087314 ENSMUST00000123610 Prkag2os2 antisense Interval_98110 chr2 148148994 148149535 + 0 NA Intergenic Intergenic -1886 ENSMUSG00000089458.1 ENSMUSG00000089458 ENSMUST00000158833 Gm24221 snoRNA Interval_73296 chr17 36031311 36032690 + 0 NA exon (ENSMUSG00000067212.8, exon 1 of 2) protein_coding-exon (ENSMUSG00000067212.8, exon 1 of 2) 690 ENSMUSG00000067212.8 ENSMUSG00000067212 ENSMUST00000174471 H2-T23 protein_coding Interval_29580 chr11 85110415 85111620 + 0 NA TTS (ENSMUSG00000082806.1) processed_pseudogene-TTS (ENSMUSG00000082806.1) 776 ENSMUSG00000082806.1 ENSMUSG00000082806 ENSMUST00000121801 Rpl13-ps1 processed_pseudogene Interval_130727 chr5 129999205 129999537 + 0 NA TTS (ENSMUSG00000025534.17) protein_coding-TTS (ENSMUSG00000025534.17) 3457 ENSMUSG00000025534.17 ENSMUSG00000025534 ENSMUST00000122994 Gusb protein_coding Interval_45065 chr13 51830860 51831795 + 0 NA Intergenic Intergenic -15417 ENSMUSG00000021453.2 ENSMUSG00000021453 ENSMUST00000132480 Gadd45g protein_coding Interval_28661 chr11 77629229 77630812 + 0 NA Intergenic Intergenic -9834 ENSMUSG00000082646.1 ENSMUSG00000082646 ENSMUST00000121688 Gm12732 processed_pseudogene Interval_163660 chr9 23462775 23463693 + 0 NA intron (ENSMUSG00000031963.8, intron 13 of 14) protein_coding-intron (ENSMUSG00000031963.8, intron 13 of 14) 239948 ENSMUSG00000031963.8 ENSMUSG00000031963 ENSMUST00000214050 Bmper protein_coding Interval_164115 chr9 31614120 31614603 + 0 NA Intergenic Intergenic -29409 ENSMUSG00000111153.1 ENSMUSG00000111153 ENSMUST00000217424 Gm18820 processed_pseudogene Interval_162340 chr8 127264542 127265158 + 0 NA intron (ENSMUSG00000025812.18, intron 1 of 1) protein_coding-intron (ENSMUSG00000025812.18, intron 2 of 23) 93446 ENSMUSG00000025812.18 ENSMUSG00000025812 ENSMUST00000159940 Pard3 protein_coding Interval_99254 chr2 158394308 158395116 + 0 NA Intergenic Intergenic 8303 ENSMUSG00000083168.1 ENSMUSG00000083168 ENSMUST00000117627 Gm14201 processed_pseudogene Interval_52372 chr14 45456578 45457459 + 0 NA Intergenic Intergenic 4627 ENSMUSG00000088769.1 ENSMUSG00000088769 ENSMUST00000158144 Gm22637 misc_RNA Interval_158764 chr8 86107922 86108133 + 0 NA Intergenic Intergenic 113782 ENSMUSG00000098439.1 ENSMUSG00000098439 ENSMUST00000183645 Hm629797 sense_intronic Interval_101908 chr3 10959475 10959767 + 0 NA Intergenic Intergenic 15965 ENSMUSG00000087858.1 ENSMUSG00000087858 ENSMUST00000157233 Gm22795 snoRNA Interval_153693 chr8 4650264 4650863 + 0 NA Intergenic Intergenic -1501 ENSMUSG00000109448.1 ENSMUSG00000109448 ENSMUST00000208203 Gm45224 processed_pseudogene Interval_20241 chr10 116382452 116383726 + 0 NA intron (ENSMUSG00000020154.10, intron 33 of 33) protein_coding-intron (ENSMUSG00000020154.10, intron 31 of 31) -34963 ENSMUSG00000020164.7 ENSMUSG00000020164 ENSMUST00000134586 Kcnmb4os1 antisense Interval_112874 chr4 45714031 45714271 + 0 NA intron (ENSMUSG00000073860.12, intron 1 of 2) lincRNA-intron (ENSMUSG00000073860.12, intron 1 of 2) -1018 ENSMUSG00000085305.1 ENSMUSG00000085305 ENSMUST00000124989 Gm12410 lincRNA Interval_82023 chr18 67245044 67246040 + 0 NA promoter-TSS (ENSMUSG00000062526.4) protein_coding-promoter-TSS (ENSMUSG00000062526.4) -101 ENSMUSG00000062526.4 ENSMUSG00000062526 ENSMUST00000237631 Mppe1 protein_coding Interval_125442 chr5 67187821 67188322 + 0 NA Intergenic Intergenic 60568 ENSMUSG00000106995.1 ENSMUSG00000106995 ENSMUST00000201933 Gm33167 TEC Interval_119980 chr4 141210014 141211013 + 0 NA Intergenic Intergenic -8133 ENSMUSG00000073733.4 ENSMUSG00000073733 ENSMUST00000151475 Cplane2 protein_coding Interval_32844 chr11 111837580 111837976 + 0 NA Intergenic Intergenic -36902 ENSMUSG00000086752.1 ENSMUSG00000086752 ENSMUST00000124855 Gm11674 lincRNA Interval_29603 chr11 85310651 85312373 + 0 NA promoter-TSS (ENSMUSG00000020525.17) protein_coding-promoter-TSS (ENSMUSG00000020525.17) -652 ENSMUSG00000020525.17 ENSMUSG00000020525 ENSMUST00000127717 Ppm1d protein_coding Interval_119766 chr4 139821153 139822346 + 0 NA intron (ENSMUSG00000028736.13, intron 4 of 8) protein_coding-intron (ENSMUSG00000028736.13, intron 4 of 8) 11258 ENSMUSG00000028736.13 ENSMUSG00000028736 ENSMUST00000174681 Pax7 protein_coding Interval_70553 chr17 11972627 11973313 + 0 NA intron (ENSMUSG00000023826.16, intron 8 of 10) protein_coding-intron (ENSMUSG00000023826.16, intron 9 of 11) -146359 ENSMUSG00000023827.8 ENSMUSG00000023827 ENSMUST00000167905 Agpat4 protein_coding Interval_63553 chr15 102002863 102004596 + 0 NA promoter-TSS (ENSMUSG00000116010.1) lincRNA-promoter-TSS (ENSMUSG00000116010.1) -483 ENSMUSG00000116010.1 ENSMUSG00000116010 ENSMUST00000230247 Gm36026 lincRNA Interval_146815 chr7 52128161 52128391 + 0 NA Intergenic Intergenic -52697 ENSMUSG00000088722.1 ENSMUSG00000088722 ENSMUST00000158097 Gm22211 snRNA Interval_170575 chr9 108966886 108967124 + 0 NA promoter-TSS (ENSMUSG00000025650.13) protein_coding-promoter-TSS (ENSMUSG00000025650.13) -2917 ENSMUSG00000076142.1 ENSMUSG00000076142 ENSMUST00000102188 Mir711 miRNA Interval_114628 chr4 83298072 83298440 + 0 NA intron (ENSMUSG00000038172.14, intron 1 of 19) protein_coding-intron (ENSMUSG00000038172.14, intron 1 of 6) -12346 ENSMUSG00000096801.1 ENSMUSG00000096801 ENSMUST00000083017 Gm23412 snRNA Interval_170527 chr9 108533651 108534776 + 0 NA TTS (ENSMUSG00000006673.14) protein_coding-TTS (ENSMUSG00000006673.14) 3381 ENSMUSG00000103621.1 ENSMUSG00000103621 ENSMUST00000193127 Gm38366 TEC Interval_25333 chr11 46436781 46438039 + 0 NA intron (ENSMUSG00000020397.15, intron 1 of 1) protein_coding-intron (ENSMUSG00000020397.15, intron 1 of 2) 449 ENSMUSG00000020397.15 ENSMUSG00000020397 ENSMUST00000133635 Med7 protein_coding Interval_122229 chr5 20469490 20470699 + 0 NA intron (ENSMUSG00000040003.18, intron 6 of 15) protein_coding-intron (ENSMUSG00000040003.18, intron 10 of 22) -118502 ENSMUSG00000106240.1 ENSMUSG00000106240 ENSMUST00000196129 Gm3544 processed_pseudogene Interval_100495 chr2 169621231 169622412 + 0 NA Intergenic Intergenic 6497 ENSMUSG00000103662.1 ENSMUSG00000103662 ENSMUST00000191912 Gm34294 TEC Interval_119441 chr4 137646537 137646945 + 0 NA intron (ENSMUSG00000043411.15, intron 1 of 2) protein_coding-intron (ENSMUSG00000043411.15, intron 24 of 27) -3560 ENSMUSG00000043411.15 ENSMUSG00000043411 ENSMUST00000125151 Usp48 protein_coding Interval_144935 chr7 29000785 29002012 + 0 NA promoter-TSS (ENSMUSG00000037337.11) protein_coding-promoter-TSS (ENSMUSG00000037337.11) -144 ENSMUSG00000037337.11 ENSMUSG00000037337 ENSMUST00000208784 Map4k1 protein_coding Interval_40848 chr12 108826760 108828665 + 0 NA exon (ENSMUSG00000021265.3, exon 3 of 4) protein_coding-exon (ENSMUSG00000021265.3, exon 3 of 4) 8108 ENSMUSG00000021265.3 ENSMUSG00000021265 ENSMUST00000139714 Slc25a29 protein_coding Interval_15250 chr10 43742245 43743288 + 0 NA intron (ENSMUSG00000111377.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000111377.1, intron 1 of 2) 321 ENSMUSG00000111377.1 ENSMUSG00000111377 ENSMUST00000214129 Gm40634 lincRNA Interval_152643 chr7 135652764 135653519 + 0 NA promoter-TSS (ENSMUSG00000097471.8) antisense-promoter-TSS (ENSMUSG00000097471.8) -858 ENSMUSG00000097471.8 ENSMUSG00000097471 ENSMUST00000210953 5830432E09Rik antisense Interval_82043 chr18 67329903 67330544 + 0 NA intron (ENSMUSG00000046415.11, intron 1 of 3) processed_transcript-intron (ENSMUSG00000046415.11, intron 1 of 4) -13381 ENSMUSG00000024526.9 ENSMUSG00000024526 ENSMUST00000025404 Cidea protein_coding Interval_61185 chr15 79833349 79834731 + 0 NA promoter-TSS (ENSMUSG00000089715.12) protein_coding-promoter-TSS (ENSMUSG00000089715.12) -91 ENSMUSG00000089715.12 ENSMUSG00000089715 ENSMUST00000129614 Cbx6 protein_coding Interval_6713 chr1 118947016 118947558 + 0 NA intron (ENSMUSG00000048402.14, intron 2 of 6) protein_coding-intron (ENSMUSG00000048402.14, intron 2 of 13) -6933 ENSMUSG00000098273.1 ENSMUSG00000098273 ENSMUST00000183982 Mir6346 miRNA Interval_120095 chr4 141784708 141785161 + 0 NA intron (ENSMUSG00000040697.10, intron 2 of 3) protein_coding-intron (ENSMUSG00000040697.10, intron 2 of 14) 5997 ENSMUSG00000040697.10 ENSMUSG00000040697 ENSMUST00000153880 Dnajc16 protein_coding Interval_80393 chr18 41509945 41510588 + 0 NA Intergenic Intergenic -32385 ENSMUSG00000118299.1 ENSMUSG00000118299 ENSMUST00000235734 Gm50408 processed_pseudogene Interval_105712 chr3 88710546 88710758 + 0 NA intron (ENSMUSG00000028060.14, intron 2 of 2) protein_coding-intron (ENSMUSG00000028060.14, intron 12 of 13) 1872 ENSMUSG00000028060.14 ENSMUSG00000028060 ENSMUST00000200622 Khdc4 protein_coding Interval_78340 chr18 12062592 12063199 + 0 NA intron (ENSMUSG00000049411.15, intron 8 of 8) protein_coding-intron (ENSMUSG00000049411.15, intron 8 of 12) 58585 ENSMUSG00000049411.15 ENSMUSG00000049411 ENSMUST00000234833 Tmem241 protein_coding Interval_69666 chr16 95088072 95088785 + 0 NA Intergenic Intergenic -13976 ENSMUSG00000116667.1 ENSMUSG00000116667 ENSMUST00000232306 Gm49641 processed_pseudogene Interval_134118 chr6 20793030 20794048 + 0 NA Intergenic Intergenic 177451 ENSMUSG00000106763.1 ENSMUSG00000106763 ENSMUST00000201133 Gm19102 processed_pseudogene Interval_174673 chrX 162809563 162809850 + 0 NA intron (ENSMUSG00000038344.14, intron 1 of 7) protein_coding-intron (ENSMUSG00000038344.14, intron 2 of 9) 19748 ENSMUSG00000038344.14 ENSMUSG00000038344 ENSMUST00000150080 Txlng protein_coding Interval_148609 chr7 83204792 83205069 + 0 NA Intergenic Intergenic -4606 ENSMUSG00000108861.1 ENSMUSG00000108861 ENSMUST00000207572 5930435M05Rik lincRNA Interval_40518 chr12 105453256 105454576 + 0 NA promoter-TSS (ENSMUSG00000094910.1) protein_coding-promoter-TSS (ENSMUSG00000094910.1) 60 ENSMUSG00000094910.1 ENSMUSG00000094910 ENSMUST00000178224 D430019H16Rik protein_coding Interval_44319 chr13 43592327 43593076 + 0 NA Intergenic Intergenic -23282 ENSMUSG00000044164.2 ENSMUSG00000044164 ENSMUST00000161817 Rnf182 protein_coding Interval_173900 chrX 108121984 108122297 + 0 NA Intergenic Intergenic 61836 ENSMUSG00000081807.1 ENSMUSG00000081807 ENSMUST00000122293 Gm14849 processed_pseudogene Interval_7308 chr1 128746389 128746681 + 0 NA Intergenic Intergenic -4391 ENSMUSG00000099403.1 ENSMUSG00000099403 ENSMUST00000185285 Gm29599 processed_pseudogene Interval_73879 chr17 45170957 45171150 + 0 NA Intergenic Intergenic -6885 ENSMUSG00000117217.1 ENSMUSG00000117217 ENSMUST00000233124 Gm4766 processed_pseudogene Interval_22176 chr11 6831847 6832058 + 0 NA Intergenic Intergenic 5173 ENSMUSG00000099102.1 ENSMUSG00000099102 ENSMUST00000184940 Gm11983 protein_coding Interval_71786 chr17 26089834 26090789 + 0 NA promoter-TSS (ENSMUSG00000036775.13) protein_coding-promoter-TSS (ENSMUSG00000036775.13) -21 ENSMUSG00000036775.13 ENSMUSG00000036775 ENSMUST00000123056 Decr2 protein_coding Interval_140069 chr6 113787662 113788431 + 0 NA intron (ENSMUSG00000030302.16, intron 9 of 19) protein_coding-intron (ENSMUSG00000030302.16, intron 9 of 19) 11638 ENSMUSG00000108297.1 ENSMUSG00000108297 ENSMUST00000204957 Gm44167 sense_intronic Interval_139844 chr6 110879171 110879430 + 0 NA intron (ENSMUSG00000056755.13, intron 2 of 9) protein_coding-intron (ENSMUSG00000056755.13, intron 1 of 10) 140950 ENSMUSG00000092603.1 ENSMUSG00000092603 ENSMUST00000174010 Gm20386 processed_pseudogene Interval_91165 chr2 35613592 35616312 + 0 NA intron (ENSMUSG00000026883.17, intron 1 of 16) protein_coding-intron (ENSMUSG00000026883.17, intron 1 of 16) -56467 ENSMUSG00000086555.2 ENSMUSG00000086555 ENSMUST00000134679 Gm13446 processed_transcript Interval_77936 chr18 5831501 5831936 + 0 NA Intergenic Intergenic -113465 ENSMUSG00000117508.1 ENSMUSG00000117508 ENSMUST00000234953 Gm34804 lincRNA Interval_48306 chr13 97969580 97970168 + 0 NA intron (ENSMUSG00000021662.11, intron 9 of 27) protein_coding-intron (ENSMUSG00000021662.11, intron 17 of 35) 46543 ENSMUSG00000021662.11 ENSMUSG00000021662 ENSMUST00000224866 Arhgef28 protein_coding Interval_95509 chr2 110704810 110705335 + 0 NA intron (ENSMUSG00000074968.11, intron 14 of 17) protein_coding-intron (ENSMUSG00000074968.11, intron 14 of 26) -16539 ENSMUSG00000050808.13 ENSMUSG00000050808 ENSMUST00000090332 Muc15 protein_coding Interval_140534 chr6 119360455 119360668 + 0 NA intron (ENSMUSG00000030168.13, intron 4 of 5) protein_coding-intron (ENSMUSG00000030168.13, intron 4 of 7) -31357 ENSMUSG00000055003.14 ENSMUSG00000055003 ENSMUST00000124192 Lrtm2 protein_coding Interval_44001 chr13 38960084 38960928 + 0 NA promoter-TSS (ENSMUSG00000021432.15) protein_coding-promoter-TSS (ENSMUSG00000021432.15) 7 ENSMUSG00000021432.15 ENSMUSG00000021432 ENSMUST00000224854 Slc35b3 protein_coding Interval_102587 chr3 28017900 28018519 + 0 NA intron (ENSMUSG00000027695.16, intron 1 of 26) protein_coding-intron (ENSMUSG00000027695.16, intron 1 of 25) -60981 ENSMUSG00000027695.16 ENSMUSG00000027695 ENSMUST00000126594 Pld1 protein_coding Interval_151610 chr7 125189841 125190792 + 0 NA Intergenic Intergenic 29570 ENSMUSG00000073844.5 ENSMUSG00000073844 ENSMUST00000073056 Gm21957 processed_pseudogene Interval_107737 chr3 112250561 112250894 + 0 NA Intergenic Intergenic -47712 ENSMUSG00000105507.1 ENSMUSG00000105507 ENSMUST00000197162 Gm43853 processed_pseudogene Interval_65133 chr16 20079628 20081040 + 0 NA Intergenic Intergenic -17251 ENSMUSG00000062901.3 ENSMUSG00000062901 ENSMUST00000231842 Klhl24 protein_coding Interval_27003 chr11 62316843 62317079 + 0 NA TTS (ENSMUSG00000018501.17) protein_coding-TTS (ENSMUSG00000018501.17) -11791 ENSMUSG00000081340.1 ENSMUSG00000081340 ENSMUST00000119805 Gm12275 processed_pseudogene Interval_28623 chr11 77308512 77309106 + 0 NA intron (ENSMUSG00000037926.15, intron 2 of 3) protein_coding-intron (ENSMUSG00000037926.15, intron 1 of 14) 15365 ENSMUSG00000083899.2 ENSMUSG00000083899 ENSMUST00000121455 Gm12346 transcribed_processed_pseudogene Interval_120275 chr4 145111436 145111832 + 0 NA intron (ENSMUSG00000020220.16, intron 17 of 51) protein_coding-intron (ENSMUSG00000020220.16, intron 34 of 67) 43852 ENSMUSG00000020220.16 ENSMUSG00000020220 ENSMUST00000132700 Vps13d protein_coding Interval_36209 chr12 39526566 39527485 + 0 NA promoter-TSS (ENSMUSG00000113343.1) lincRNA-promoter-TSS (ENSMUSG00000113343.1) -70 ENSMUSG00000113343.1 ENSMUSG00000113343 ENSMUST00000222673 Gm34923 lincRNA Interval_133433 chr6 4993299 4995055 + 0 NA intron (ENSMUSG00000032827.15, intron 1 of 17) protein_coding-intron (ENSMUSG00000032827.15, intron 2 of 15) 35194 ENSMUSG00000097396.1 ENSMUSG00000097396 ENSMUST00000180645 Gm26556 TEC Interval_143237 chr7 4677326 4678050 + 0 NA TTS (ENSMUSG00000063802.5) protein_coding-TTS (ENSMUSG00000063802.5) 6973 ENSMUSG00000063802.5 ENSMUSG00000063802 ENSMUST00000206306 Hspbp1 protein_coding Interval_105332 chr3 85002723 85003345 + 0 NA intron (ENSMUSG00000102805.5, intron 3 of 9) protein_coding-intron (ENSMUSG00000102805.5, intron 3 of 9) 129143 ENSMUSG00000102919.1 ENSMUSG00000102919 ENSMUST00000193246 Gm37726 TEC Interval_81564 chr18 61716786 61717271 + 0 NA exon (ENSMUSG00000024580.8, exon 4 of 4) protein_coding-exon (ENSMUSG00000024580.8, exon 4 of 4) 9297 ENSMUSG00000024580.8 ENSMUSG00000024580 ENSMUST00000237466 Grpel2 protein_coding Interval_136798 chr6 60467815 60468035 + 0 NA Intergenic Intergenic -5811 ENSMUSG00000107863.1 ENSMUSG00000107863 ENSMUST00000203795 Gm44389 processed_pseudogene Interval_8667 chr1 146598115 146598329 + 0 NA intron (ENSMUSG00000035131.14, intron 3 of 8) protein_coding-intron (ENSMUSG00000035131.14, intron 2 of 7) 100535 ENSMUSG00000035131.14 ENSMUSG00000035131 ENSMUST00000125331 Brinp3 protein_coding Interval_68639 chr16 82596441 82596894 + 0 NA Intergenic Intergenic 31459 ENSMUSG00000116923.1 ENSMUSG00000116923 ENSMUST00000231395 Gm7559 processed_pseudogene Interval_146807 chr7 51979469 51979813 + 0 NA intron (ENSMUSG00000030498.15, intron 6 of 6) protein_coding-intron (ENSMUSG00000030498.15, intron 7 of 7) 26057 ENSMUSG00000074093.4 ENSMUSG00000074093 ENSMUST00000207457 Svip protein_coding Interval_12865 chr10 7005123 7005687 + 0 NA intron (ENSMUSG00000064065.15, intron 1 of 7) protein_coding-intron (ENSMUSG00000000766.18, intron 3 of 4) 17780 ENSMUSG00000064065.15 ENSMUSG00000064065 ENSMUST00000151960 Ipcef1 protein_coding Interval_33825 chr11 118775551 118776351 + 0 NA intron (ENSMUSG00000025576.17, intron 2 of 14) protein_coding-intron (ENSMUSG00000025576.17, intron 2 of 14) -15421 ENSMUSG00000085059.1 ENSMUSG00000085059 ENSMUST00000146016 Gm11750 lincRNA Interval_84095 chr19 7182327 7183107 + 0 NA intron (ENSMUSG00000036278.7, intron 3 of 10) protein_coding-intron (ENSMUSG00000036278.7, intron 3 of 10) 23058 ENSMUSG00000024767.11 ENSMUSG00000024767 ENSMUST00000123743 Otub1 protein_coding Interval_161479 chr8 120642070 120642646 + 0 NA intron (ENSMUSG00000097919.1, intron 1 of 3) protein_coding-intron (ENSMUSG00000092329.1, intron 1 of 15) -1592 ENSMUSG00000097500.1 ENSMUSG00000097500 ENSMUST00000181474 Gm26537 antisense Interval_98695 chr2 154364049 154364414 + 0 NA intron (ENSMUSG00000027487.11, intron 5 of 5) protein_coding-intron (ENSMUSG00000027487.11, intron 5 of 13) -9887 ENSMUSG00000027487.11 ENSMUSG00000027487 ENSMUST00000137918 Cdk5rap1 protein_coding Interval_27824 chr11 70228954 70230763 + 0 NA promoter-TSS (ENSMUSG00000000317.11) protein_coding-promoter-TSS (ENSMUSG00000000317.11) -181 ENSMUSG00000000317.11 ENSMUSG00000000317 ENSMUST00000140542 Bcl6b protein_coding Interval_33230 chr11 115366734 115368009 + 0 NA intron (ENSMUSG00000034586.14, intron 1 of 5) protein_coding-intron (ENSMUSG00000034586.14, intron 1 of 18) -11998 ENSMUSG00000034586.14 ENSMUSG00000034586 ENSMUST00000152977 Hid1 protein_coding Interval_129427 chr5 120106399 120106916 + 0 NA Intergenic Intergenic 32606 ENSMUSG00000097368.2 ENSMUSG00000097368 ENSMUST00000181905 Gm10390 antisense Interval_76114 chr17 75096753 75098132 + 0 NA intron (ENSMUSG00000001870.16, intron 3 of 34) protein_coding-intron (ENSMUSG00000001870.16, intron 3 of 33) -67765 ENSMUSG00000084025.1 ENSMUSG00000084025 ENSMUST00000120159 Gm6276 processed_pseudogene Interval_134791 chr6 31563346 31564411 + 0 NA exon (ENSMUSG00000025608.9, exon 1 of 8) protein_coding-exon (ENSMUSG00000025608.9, exon 1 of 8) -11089 ENSMUSG00000086732.1 ENSMUSG00000086732 ENSMUST00000150540 Gm6117 lincRNA Interval_89156 chr2 17603490 17604346 + 0 NA intron (ENSMUSG00000053702.16, intron 2 of 6) protein_coding-intron (ENSMUSG00000053702.16, intron 2 of 6) 40404 ENSMUSG00000099161.1 ENSMUSG00000099161 ENSMUST00000184784 Mir6419 miRNA Interval_70546 chr17 11895296 11895778 + 0 NA intron (ENSMUSG00000023826.16, intron 8 of 10) protein_coding-intron (ENSMUSG00000023826.16, intron 9 of 11) -163192 ENSMUSG00000104466.1 ENSMUSG00000104466 ENSMUST00000194203 Gm10513 TEC Interval_93333 chr2 72018365 72019551 + 0 NA intron (ENSMUSG00000049044.16, intron 1 of 5) protein_coding-intron (ENSMUSG00000049044.16, intron 1 of 30) -19166 ENSMUSG00000088297.1 ENSMUSG00000088297 ENSMUST00000157672 Gm26408 snoRNA Interval_143244 chr7 4716152 4716442 + 0 NA TTS (ENSMUSG00000035390.16) protein_coding-TTS (ENSMUSG00000035390.16) 8952 ENSMUSG00000046456.14 ENSMUSG00000046456 ENSMUST00000086363 Tmem150b protein_coding Interval_129187 chr5 118056278 118057341 + 0 NA intron (ENSMUSG00000029359.13, intron 6 of 7) protein_coding-intron (ENSMUSG00000029359.13, intron 6 of 7) -8551 ENSMUSG00000029360.3 ENSMUSG00000029360 ENSMUST00000031305 Gm9754 antisense Interval_10486 chr1 171263892 171264854 + 0 NA Intergenic Intergenic -5966 ENSMUSG00000052423.14 ENSMUSG00000052423 ENSMUST00000132890 B4galt3 protein_coding Interval_27580 chr11 68831399 68831904 + 0 NA intron (ENSMUSG00000018736.14, intron 3 of 5) protein_coding-intron (ENSMUSG00000018736.14, intron 7 of 8) 28345 ENSMUSG00000018736.14 ENSMUSG00000018736 ENSMUST00000127469 Ndel1 protein_coding Interval_150050 chr7 105411995 105413343 + 0 NA TTS (ENSMUSG00000109609.1) processed_pseudogene-TTS (ENSMUSG00000109609.1) 1304 ENSMUSG00000109609.1 ENSMUSG00000109609 ENSMUST00000211108 Gm4972 processed_pseudogene Interval_79870 chr18 35664467 35665607 + 0 NA Intergenic Intergenic -2874 ENSMUSG00000117874.1 ENSMUSG00000117874 ENSMUST00000235292 Gm50318 protein_coding Interval_135699 chr6 43625372 43626517 + 0 NA promoter-TSS (ENSMUSG00000029735.17) protein_coding-promoter-TSS (ENSMUSG00000029735.17) 22 ENSMUSG00000029735.17 ENSMUSG00000029735 ENSMUST00000114643 Tpk1 protein_coding Interval_87605 chr19 53696098 53698669 + 0 NA intron (ENSMUSG00000043639.15, intron 1 of 13) protein_coding-intron (ENSMUSG00000043639.15, intron 1 of 13) 20077 ENSMUSG00000043639.15 ENSMUSG00000043639 ENSMUST00000161856 Rbm20 protein_coding Interval_143220 chr7 4546291 4547753 + 0 NA promoter-TSS (ENSMUSG00000004961.7) protein_coding-promoter-TSS (ENSMUSG00000004961.7) -49 ENSMUSG00000004961.7 ENSMUSG00000004961 ENSMUST00000206933 Syt5 protein_coding Interval_104532 chr3 67479306 67480423 + 0 NA intron (ENSMUSG00000049404.7, intron 4 of 5) protein_coding-intron (ENSMUSG00000049404.7, intron 4 of 5) 2886 ENSMUSG00000103703.2 ENSMUSG00000103703 ENSMUST00000195639 Gm42568 TEC Interval_88041 chr19 58274494 58275321 + 0 NA intron (ENSMUSG00000025089.15, intron 5 of 9) protein_coding-intron (ENSMUSG00000025089.15, intron 6 of 10) 70768 ENSMUSG00000087002.1 ENSMUSG00000087002 ENSMUST00000143595 Gm16277 antisense Interval_12047 chr1 189080721 189082530 + 0 NA Intergenic Intergenic -1921 ENSMUSG00000104464.1 ENSMUSG00000104464 ENSMUST00000192327 Gm18698 processed_pseudogene Interval_8287 chr1 136945513 136946184 + 0 NA intron (ENSMUSG00000026398.14, intron 2 of 4) protein_coding-intron (ENSMUSG00000026398.14, intron 3 of 8) 3325 ENSMUSG00000026398.14 ENSMUSG00000026398 ENSMUST00000195428 Nr5a2 protein_coding Interval_85267 chr19 24251555 24253076 + 0 NA Intergenic Intergenic 25856 ENSMUSG00000059363.10 ENSMUSG00000059363 ENSMUST00000132688 Fxn protein_coding Interval_42838 chr13 20174034 20174855 + 0 NA intron (ENSMUSG00000041112.17, intron 1 of 13) protein_coding-intron (ENSMUSG00000041112.17, intron 1 of 21) -97461 ENSMUSG00000113649.1 ENSMUSG00000113649 ENSMUST00000222367 Gm47665 TEC Interval_173259 chrX 75723323 75724101 + 0 NA promoter-TSS (ENSMUSG00000081996.1) processed_pseudogene-promoter-TSS (ENSMUSG00000081996.1) 40 ENSMUSG00000081996.1 ENSMUSG00000081996 ENSMUST00000117092 Gm7153 processed_pseudogene Interval_152742 chr7 137104016 137104426 + 0 NA intron (ENSMUSG00000054612.4, intron 3 of 4) protein_coding-intron (ENSMUSG00000054612.4, intron 3 of 4) -63599 ENSMUSG00000110174.1 ENSMUSG00000110174 ENSMUST00000211656 Gm45499 processed_pseudogene Interval_107471 chr3 107939460 107939869 + 0 NA intron (ENSMUSG00000068762.11, intron 5 of 5) protein_coding-intron (ENSMUSG00000068762.11, intron 4 of 4) 3719 ENSMUSG00000068762.11 ENSMUSG00000068762 ENSMUST00000106680 Gstm6 protein_coding Interval_19403 chr10 98963156 98963976 + 0 NA intron (ENSMUSG00000019943.10, intron 1 of 8) protein_coding-intron (ENSMUSG00000019943.10, intron 1 of 20) -27314 ENSMUSG00000019943.10 ENSMUSG00000019943 ENSMUST00000218419 Atp2b1 protein_coding Interval_163020 chr9 14590195 14590959 + 0 NA intron (ENSMUSG00000013076.17, intron 4 of 13) protein_coding-intron (ENSMUSG00000013076.17, intron 3 of 12) 28988 ENSMUSG00000111540.1 ENSMUSG00000111540 ENSMUST00000216646 4930584E12Rik TEC Interval_106172 chr3 94327012 94327275 + 0 NA intron (ENSMUSG00000028145.9, intron 4 of 5) protein_coding-intron (ENSMUSG00000028145.9, intron 4 of 5) 8189 ENSMUSG00000105506.1 ENSMUSG00000105506 ENSMUST00000198353 Gm43743 transcribed_processed_pseudogene Interval_9695 chr1 161086725 161087309 + 0 NA TTS (ENSMUSG00000026708.16) protein_coding-TTS (ENSMUSG00000026708.16) 8607 ENSMUSG00000026705.16 ENSMUSG00000026705 ENSMUST00000145736 Klhl20 protein_coding Interval_147611 chr7 69665131 69665707 + 0 NA Intergenic Intergenic -58579 ENSMUSG00000098246.1 ENSMUSG00000098246 ENSMUST00000183205 Gm7627 processed_pseudogene Interval_28090 chr11 72753660 72754311 + 0 NA intron (ENSMUSG00000020790.14, intron 16 of 24) protein_coding-intron (ENSMUSG00000020790.14, intron 14 of 22) 41856 ENSMUSG00000057778.14 ENSMUSG00000057778 ENSMUST00000169476 Cyb5d2 protein_coding Interval_11791 chr1 185462534 185463410 + 0 NA intron (ENSMUSG00000026614.7, intron 3 of 3) protein_coding-intron (ENSMUSG00000026614.7, intron 3 of 3) -7404 ENSMUSG00000097615.1 ENSMUSG00000097615 ENSMUST00000180623 Gm2061 antisense Interval_69921 chr17 3208765 3209682 + 0 NA intron (ENSMUSG00000116858.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000116858.1, intron 1 of 2) -22048 ENSMUSG00000116858.1 ENSMUSG00000116858 ENSMUST00000232042 Gm49797 lincRNA Interval_4487 chr1 74513345 74515686 + 0 NA intron (ENSMUSG00000026174.9, intron 1 of 7) protein_coding-intron (ENSMUSG00000026174.9, intron 1 of 7) -8730 ENSMUSG00000033364.13 ENSMUSG00000033364 ENSMUST00000187590 Usp37 protein_coding Interval_32673 chr11 109567812 109568101 + 0 NA intron (ENSMUSG00000020604.13, intron 11 of 11) protein_coding-intron (ENSMUSG00000020604.13, intron 13 of 13) 44011 ENSMUSG00000041895.15 ENSMUSG00000041895 ENSMUST00000153738 Wipi1 protein_coding Interval_123808 chr5 35685096 35685395 + 0 NA Intergenic Intergenic -6151 ENSMUSG00000029096.15 ENSMUSG00000029096 ENSMUST00000200810 Htra3 protein_coding Interval_11139 chr1 179598196 179599544 + 0 NA intron (ENSMUSG00000038949.8, intron 1 of 3) protein_coding-intron (ENSMUSG00000038949.8, intron 3 of 10) 52361 ENSMUSG00000038949.8 ENSMUSG00000038949 ENSMUST00000143270 Cnst protein_coding Interval_161404 chr8 120275724 120277342 + 0 NA intron (ENSMUSG00000031822.20, intron 1 of 2) protein_coding-intron (ENSMUSG00000092329.1, intron 1 of 15) -48303 ENSMUSG00000097960.1 ENSMUSG00000097960 ENSMUST00000183235 A330074K22Rik lincRNA Interval_46618 chr13 67628540 67629748 + 0 NA intron (ENSMUSG00000021510.11, intron 1 of 3) protein_coding-intron (ENSMUSG00000021510.11, intron 1 of 3) -1855 ENSMUSG00000021510.11 ENSMUSG00000021510 ENSMUST00000225608 Zfp729a protein_coding Interval_1896 chr1 34401096 34402845 + 0 NA Intergenic Intergenic 16016 ENSMUSG00000101462.2 ENSMUSG00000101462 ENSMUST00000188254 Gm3052 transcribed_processed_pseudogene Interval_42047 chr13 6870983 6871287 + 0 NA Intergenic Intergenic 54716 ENSMUSG00000113932.1 ENSMUSG00000113932 ENSMUST00000220700 2900024D18Rik TEC Interval_31661 chr11 102096329 102097738 + 0 NA Intergenic Intergenic 4277 ENSMUSG00000017316.13 ENSMUSG00000017316 ENSMUST00000017460 Ppy protein_coding Interval_117327 chr4 123010959 123011269 + 0 NA Intergenic Intergenic -5483 ENSMUSG00000028653.16 ENSMUSG00000028653 ENSMUST00000141855 Trit1 protein_coding Interval_141167 chr6 125372729 125373082 + 0 NA exon (ENSMUSG00000038167.6, exon 10 of 17) protein_coding-exon (ENSMUSG00000038167.6, exon 10 of 17) 7888 ENSMUSG00000038167.6 ENSMUSG00000038167 ENSMUST00000042647 Plekhg6 protein_coding Interval_5637 chr1 90473661 90474126 + 0 NA Intergenic Intergenic -19392 ENSMUSG00000101997.1 ENSMUSG00000101997 ENSMUST00000187630 Gm28722 lincRNA Interval_101855 chr3 10134818 10135491 + 0 NA Intergenic Intergenic -45199 ENSMUSG00000103045.1 ENSMUSG00000103045 ENSMUST00000194684 Gm37308 processed_pseudogene Interval_68495 chr16 78231446 78231633 + 0 NA Intergenic Intergenic -8719 ENSMUSG00000077451.1 ENSMUSG00000077451 ENSMUST00000104263 Gm25916 snoRNA Interval_140070 chr6 113795020 113795709 + 0 NA intron (ENSMUSG00000030302.16, intron 7 of 19) protein_coding-intron (ENSMUSG00000030302.16, intron 7 of 19) 4320 ENSMUSG00000108297.1 ENSMUSG00000108297 ENSMUST00000204957 Gm44167 sense_intronic Interval_132917 chr5 148739162 148739532 + 0 NA Intergenic Intergenic -2493 ENSMUSG00000086494.1 ENSMUSG00000086494 ENSMUST00000150265 2210417A02Rik lincRNA Interval_1351 chr1 20905527 20906847 + 0 NA intron (ENSMUSG00000025931.15, intron 1 of 2) protein_coding-intron (ENSMUSG00000025931.15, intron 1 of 2) 9353 ENSMUSG00000077314.1 ENSMUSG00000077314 ENSMUST00000104126 Gm24171 snoRNA Interval_125437 chr5 67106039 67106535 + 0 NA Intergenic Intergenic -7230 ENSMUSG00000012520.10 ENSMUSG00000012520 ENSMUST00000174251 Phox2b protein_coding Interval_64273 chr16 10088473 10089324 + 0 NA Intergenic Intergenic -42933 ENSMUSG00000098170.1 ENSMUSG00000098170 ENSMUST00000182416 Gm3890 processed_pseudogene Interval_10196 chr1 167045651 167047468 + 0 NA intron (ENSMUSG00000060568.14, intron 1 of 2) protein_coding-intron (ENSMUSG00000060568.14, intron 1 of 2) 45142 ENSMUSG00000060568.14 ENSMUSG00000060568 ENSMUST00000128373 Fam78b protein_coding Interval_117340 chr4 123104445 123105820 + 0 NA promoter-TSS (ENSMUSG00000002384.2) protein_coding-promoter-TSS (ENSMUSG00000002384.2) -11104 ENSMUSG00000086153.1 ENSMUSG00000086153 ENSMUST00000127060 Gm12923 antisense Interval_3838 chr1 63453337 63453652 + 0 NA intron (ENSMUSG00000025964.15, intron 2 of 23) protein_coding-intron (ENSMUSG00000025964.15, intron 2 of 25) -17125 ENSMUSG00000025964.15 ENSMUSG00000025964 ENSMUST00000141545 Adam23 protein_coding Interval_111793 chr4 29186217 29186657 + 0 NA Intergenic Intergenic -9083 ENSMUSG00000082486.1 ENSMUSG00000082486 ENSMUST00000117609 Gm11919 processed_pseudogene Interval_147453 chr7 67387903 67388587 + 0 NA Intergenic Intergenic -17265 ENSMUSG00000109363.1 ENSMUSG00000109363 ENSMUST00000207911 Gm44668 TEC Interval_33005 chr11 113627921 113628638 + 0 NA intron (ENSMUSG00000041654.15, intron 1 of 3) protein_coding-intron (ENSMUSG00000041654.15, intron 1 of 2) 8937 ENSMUSG00000047904.6 ENSMUSG00000047904 ENSMUST00000067591 Sstr2 protein_coding Interval_30407 chr11 94175442 94175932 + 0 NA Intergenic Intergenic -35767 ENSMUSG00000037573.5 ENSMUSG00000037573 ENSMUST00000041589 Tob1 protein_coding Interval_152693 chr7 136349759 136349940 + 0 NA promoter-TSS (ENSMUSG00000109633.1) lincRNA-promoter-TSS (ENSMUSG00000109633.1) -434 ENSMUSG00000109633.1 ENSMUSG00000109633 ENSMUST00000209560 C230079O03Rik lincRNA Interval_130523 chr5 128562628 128562988 + 0 NA Intergenic Intergenic 35148 ENSMUSG00000105059.1 ENSMUSG00000105059 ENSMUST00000199981 Gm42498 TEC Interval_49423 chr13 111870786 111872732 + 0 NA exon (ENSMUSG00000086111.1, exon 3 of 3) lincRNA-exon (ENSMUSG00000086111.1, exon 3 of 3) 3823 ENSMUSG00000086111.1 ENSMUSG00000086111 ENSMUST00000127817 Gm15326 lincRNA Interval_133706 chr6 9093643 9093871 + 0 NA intron (ENSMUSG00000046178.3, intron 2 of 2) protein_coding-intron (ENSMUSG00000046178.3, intron 1 of 1) -53009 ENSMUSG00000107851.1 ENSMUSG00000107851 ENSMUST00000203681 Gm35736 processed_pseudogene Interval_32775 chr11 110466722 110467031 + 0 NA intron (ENSMUSG00000020623.11, intron 1 of 11) protein_coding-intron (ENSMUSG00000020623.11, intron 1 of 11) -10501 ENSMUSG00000020623.11 ENSMUSG00000020623 ENSMUST00000133920 Map2k6 protein_coding Interval_121981 chr5 12937060 12937296 + 0 NA Intergenic Intergenic -3192 ENSMUSG00000094310.1 ENSMUSG00000094310 ENSMUST00000180047 Gm23243 miRNA Interval_142927 chr6 147042012 147043706 + 0 NA promoter-TSS (ENSMUSG00000040112.9) protein_coding-promoter-TSS (ENSMUSG00000040112.9) 95 ENSMUSG00000040112.9 ENSMUSG00000040112 ENSMUST00000123139 Mrps35 protein_coding Interval_25772 chr11 51629603 51629888 + 0 NA intron (ENSMUSG00000001054.9, intron 1 of 1) protein_coding-intron (ENSMUSG00000001054.9, intron 1 of 9) -3911 ENSMUSG00000001054.9 ENSMUSG00000001054 ENSMUST00000132854 Rmnd5b protein_coding Interval_103209 chr3 36828236 36828642 + 0 NA Intergenic Intergenic -3481 ENSMUSG00000084027.1 ENSMUSG00000084027 ENSMUST00000120538 Gm12376 processed_pseudogene Interval_31537 chr11 101236400 101236647 + 0 NA Intergenic Intergenic -10044 ENSMUSG00000001240.13 ENSMUSG00000001240 ENSMUST00000107282 Ramp2 protein_coding Interval_17417 chr10 76480343 76481923 + 0 NA promoter-TSS (ENSMUSG00000001150.7) protein_coding-promoter-TSS (ENSMUSG00000001150.7) -68 ENSMUSG00000001150.7 ENSMUSG00000001150 ENSMUST00000218904 Mcm3ap protein_coding Interval_71076 chr17 17707391 17707638 + 0 NA intron (ENSMUSG00000092120.2, intron 1 of 3) protein_coding-intron (ENSMUSG00000092120.2, intron 1 of 5) 3767 ENSMUSG00000092120.2 ENSMUSG00000092120 ENSMUST00000232113 Vmn2r90 protein_coding Interval_106435 chr3 96192490 96194836 + 0 NA intron (ENSMUSG00000038486.9, intron 2 of 2) protein_coding-intron (ENSMUSG00000038486.9, intron 12 of 12) 1117 ENSMUSG00000038486.9 ENSMUSG00000038486 ENSMUST00000196912 Sv2a protein_coding Interval_80969 chr18 51698817 51699155 + 0 NA Intergenic Intergenic -91318 ENSMUSG00000077317.1 ENSMUSG00000077317 ENSMUST00000104129 Gm25785 snRNA Interval_33905 chr11 119295898 119296250 + 0 NA exon (ENSMUSG00000025580.15, exon 3 of 12) protein_coding-exon (ENSMUSG00000025580.15, exon 3 of 12) -6998 ENSMUSG00000025580.15 ENSMUSG00000025580 ENSMUST00000134743 Eif4a3 protein_coding Interval_131473 chr5 137453129 137455410 + 0 NA exon (ENSMUSG00000079173.11, exon 21 of 88) protein_coding-exon (ENSMUSG00000079173.11, exon 21 of 88) 21282 ENSMUSG00000106476.1 ENSMUSG00000106476 ENSMUST00000196458 Rpl36-ps9 processed_pseudogene Interval_128720 chr5 114913834 114914066 + 0 NA Intergenic Intergenic 9327 ENSMUSG00000087477.1 ENSMUSG00000087477 ENSMUST00000127563 Gm13822 antisense Interval_30995 chr11 97626409 97627260 + 0 NA TTS (ENSMUSG00000043439.5) protein_coding-TTS (ENSMUSG00000043439.5) 2868 ENSMUSG00000043439.5 ENSMUSG00000043439 ENSMUST00000052281 Epop protein_coding Interval_38476 chr12 79295506 79297936 + 0 NA promoter-TSS (ENSMUSG00000066440.5) protein_coding-promoter-TSS (ENSMUSG00000066440.5) -30632 ENSMUSG00000059060.15 ENSMUSG00000059060 ENSMUST00000221257 Rad51b protein_coding Interval_100041 chr2 166701564 166701924 + 0 NA intron (ENSMUSG00000039621.13, intron 1 of 2) protein_coding-intron (ENSMUSG00000039621.13, intron 1 of 39) 1850 ENSMUSG00000039621.13 ENSMUSG00000039621 ENSMUST00000140624 Prex1 protein_coding Interval_59019 chr15 41771813 41771985 + 0 NA intron (ENSMUSG00000097232.1, intron 1 of 3) protein_coding-intron (ENSMUSG00000022307.16, intron 3 of 15) 17012 ENSMUSG00000097232.1 ENSMUSG00000097232 ENSMUST00000180418 Gm26854 antisense Interval_93061 chr2 69888738 69889242 + 0 NA TTS (ENSMUSG00000085735.1) antisense-TTS (ENSMUSG00000085735.1) 3262 ENSMUSG00000085735.1 ENSMUSG00000085735 ENSMUST00000129114 Mettl5os antisense Interval_2467 chr1 39563002 39563790 + 0 NA intron (ENSMUSG00000048234.13, intron 3 of 5) protein_coding-intron (ENSMUSG00000048234.13, intron 3 of 6) 10479 ENSMUSG00000064936.1 ENSMUSG00000064936 ENSMUST00000083002 Gm23722 snoRNA Interval_10059 chr1 165485267 165485579 + 0 NA intron (ENSMUSG00000026567.16, intron 1 of 32) protein_coding-intron (ENSMUSG00000026567.16, intron 1 of 33) -7999 ENSMUSG00000103059.1 ENSMUSG00000103059 ENSMUST00000192239 Gm18186 processed_pseudogene Interval_151 JH584295.1 385 1817 + 0 NA NA NA NA NA Interval_13183 chr10 12892898 12893253 + 0 NA Intergenic Intergenic 30015 ENSMUSG00000097378.8 ENSMUSG00000097378 ENSMUST00000180529 B230208H11Rik lincRNA Interval_132538 chr5 146036807 146037895 + 0 NA Intergenic Intergenic -9461 ENSMUSG00000104636.1 ENSMUSG00000104636 ENSMUST00000200131 Gm43239 processed_pseudogene Interval_52853 chr14 51103442 51103756 + 0 NA intron (ENSMUSG00000021876.15, intron 1 of 1) protein_coding-intron (ENSMUSG00000021876.15, intron 1 of 1) 7240 ENSMUSG00000021876.15 ENSMUSG00000021876 ENSMUST00000169895 Rnase4 protein_coding Interval_67783 chr16 57166595 57167737 + 0 NA promoter-TSS (ENSMUSG00000097876.1) antisense-promoter-TSS (ENSMUSG00000097876.1) -235 ENSMUSG00000097876.1 ENSMUSG00000097876 ENSMUST00000180999 Gm16892 antisense Interval_138768 chr6 91712707 91713309 + 0 NA exon (ENSMUSG00000108574.1, exon 1 of 1) protein_coding-intron (ENSMUSG00000030096.8, intron 3 of 4) 270 ENSMUSG00000108574.1 ENSMUSG00000108574 ENSMUST00000205549 Gm44981 TEC Interval_7748 chr1 133411447 133412281 + 0 NA intron (ENSMUSG00000070643.11, intron 1 of 13) protein_coding-intron (ENSMUSG00000070643.11, intron 1 of 13) 12513 ENSMUSG00000070643.11 ENSMUSG00000070643 ENSMUST00000126530 Sox13 protein_coding Interval_22202 chr11 7140263 7140910 + 0 NA intron (ENSMUSG00000020431.5, intron 8 of 19) protein_coding-intron (ENSMUSG00000020431.5, intron 8 of 19) -19296 ENSMUSG00000020431.5 ENSMUSG00000020431 ENSMUST00000135398 Adcy1 protein_coding Interval_96347 chr2 121834020 121835185 + 0 NA Intergenic Intergenic 32115 ENSMUSG00000086913.1 ENSMUSG00000086913 ENSMUST00000131514 Gm14019 antisense Interval_52518 chr14 47258684 47259874 + 0 NA intron (ENSMUSG00000037572.17, intron 13 of 24) protein_coding-intron (ENSMUSG00000037572.17, intron 13 of 13) 2907 ENSMUSG00000115849.1 ENSMUSG00000115849 ENSMUST00000228742 Gm49149 TEC Interval_144547 chr7 25816099 25817419 + 0 NA promoter-TSS (ENSMUSG00000040703.11) protein_coding-promoter-TSS (ENSMUSG00000040703.11) 105 ENSMUSG00000097017.1 ENSMUSG00000097017 ENSMUST00000181552 Gm26707 lincRNA Interval_72918 chr17 33464745 33465134 + 0 NA Intergenic Intergenic 3747 ENSMUSG00000117495.2 ENSMUSG00000117495 ENSMUST00000234517 Gm4125 protein_coding Interval_33020 chr11 113709000 113711238 + 0 NA promoter-TSS (ENSMUSG00000018727.19) protein_coding-promoter-TSS (ENSMUSG00000018727.19) -599 ENSMUSG00000018727.19 ENSMUSG00000018727 ENSMUST00000151396 Cpsf4l protein_coding Interval_55780 chr14 99971206 99971850 + 0 NA intron (ENSMUSG00000072294.5, intron 5 of 7) protein_coding-intron (ENSMUSG00000072294.5, intron 4 of 6) -71137 ENSMUSG00000072294.5 ENSMUSG00000072294 ENSMUST00000226544 Klf12 protein_coding Interval_152978 chr7 140224121 140224937 + 0 NA promoter-TSS (ENSMUSG00000025461.11) protein_coding-promoter-TSS (ENSMUSG00000025461.11) 6262 ENSMUSG00000025461.11 ENSMUSG00000025461 ENSMUST00000209840 Cd163l1 protein_coding Interval_171126 chr9 114657238 114657793 + 0 NA Intergenic Intergenic -9480 ENSMUSG00000111744.1 ENSMUSG00000111744 ENSMUST00000214787 Gm7780 processed_pseudogene Interval_106233 chr3 94819121 94820189 + 0 NA Intergenic Intergenic -13322 ENSMUSG00000084058.1 ENSMUSG00000084058 ENSMUST00000121556 Gm15263 processed_pseudogene Interval_48541 chr13 99963462 99963716 + 0 NA intron (ENSMUSG00000021646.9, intron 5 of 6) protein_coding-intron (ENSMUSG00000021646.9, intron 11 of 16) 11727 ENSMUSG00000021646.9 ENSMUSG00000021646 ENSMUST00000221846 Mccc2 protein_coding Interval_75518 chr17 67721038 67722164 + 0 NA intron (ENSMUSG00000032796.8, intron 3 of 15) protein_coding-intron (ENSMUSG00000032796.8, intron 3 of 62) 24336 ENSMUSG00000032796.8 ENSMUSG00000032796 ENSMUST00000233224 Lama1 protein_coding Interval_73566 chr17 40540966 40542596 + 0 NA Intergenic Intergenic -10817 ENSMUSG00000117230.1 ENSMUSG00000117230 ENSMUST00000233401 Gm29748 processed_pseudogene Interval_122725 chr5 24902544 24903270 + 0 NA promoter-TSS (ENSMUSG00000028944.14) protein_coding-promoter-TSS (ENSMUSG00000028944.14) 338 ENSMUSG00000086446.1 ENSMUSG00000086446 ENSMUST00000134633 Prkag2os1 antisense Interval_43510 chr13 32273074 32273350 + 0 NA intron (ENSMUSG00000038372.14, intron 1 of 3) protein_coding-intron (ENSMUSG00000038372.14, intron 1 of 10) 65412 ENSMUSG00000038372.14 ENSMUSG00000038372 ENSMUST00000179717 Gmds protein_coding Interval_124577 chr5 51582688 51583782 + 0 NA Intergenic Intergenic -29344 ENSMUSG00000029167.13 ENSMUSG00000029167 ENSMUST00000127135 Ppargc1a protein_coding Interval_122323 chr5 21299356 21300466 + 0 NA intron (ENSMUSG00000064280.14, intron 15 of 18) protein_coding-intron (ENSMUSG00000064280.14, intron 15 of 18) 10042 ENSMUSG00000039934.12 ENSMUSG00000039934 ENSMUST00000199553 Gsap protein_coding Interval_26091 chr11 54091656 54091953 + 0 NA Intergenic Intergenic -9171 ENSMUSG00000018906.14 ENSMUSG00000018906 ENSMUST00000139315 P4ha2 protein_coding Interval_23540 chr11 23264765 23265612 + 0 NA intron (ENSMUSG00000020290.14, intron 2 of 12) protein_coding-intron (ENSMUSG00000020290.14, intron 3 of 25) -19456 ENSMUSG00000020290.14 ENSMUSG00000020290 ENSMUST00000150750 Xpo1 protein_coding Interval_122566 chr5 23826084 23826828 + 0 NA intron (ENSMUSG00000086697.2, intron 2 of 4) antisense-intron (ENSMUSG00000086697.2, intron 2 of 4) -2878 ENSMUSG00000118636.1 ENSMUSG00000118636 ENSMUST00000239171 AC117663.3 transcribed_unitary_pseudogene Interval_48221 chr13 97259432 97261941 + 0 NA Intergenic Intergenic 19581 ENSMUSG00000041773.8 ENSMUSG00000041773 ENSMUST00000041623 Enc1 protein_coding Interval_98068 chr2 147373207 147374024 + 0 NA intron (ENSMUSG00000037034.16, intron 1 of 1) protein_coding-intron (ENSMUSG00000037034.16, intron 4 of 4) 5333 ENSMUSG00000037034.16 ENSMUSG00000037034 ENSMUST00000156584 Pax1 protein_coding Interval_104223 chr3 61041972 61042327 + 0 NA Intergenic Intergenic -38363 ENSMUSG00000102564.1 ENSMUSG00000102564 ENSMUST00000194809 Gm37035 antisense Interval_12342 chr1 192277471 192278070 + 0 NA intron (ENSMUSG00000058248.12, intron 6 of 10) protein_coding-intron (ENSMUSG00000058248.12, intron 6 of 10) 140425 ENSMUSG00000097316.2 ENSMUSG00000097316 ENSMUST00000195083 Gm10516 antisense Interval_64418 chr16 11236043 11236749 + 0 NA intron (ENSMUSG00000062203.15, intron 5 of 14) protein_coding-intron (ENSMUSG00000062203.15, intron 5 of 14) 17929 ENSMUSG00000062203.15 ENSMUSG00000062203 ENSMUST00000229660 Gspt1 protein_coding Interval_88391 chr2 4665442 4665704 + 0 NA Intergenic Intergenic -13492 ENSMUSG00000039449.14 ENSMUSG00000039449 ENSMUST00000144650 Prpf18 protein_coding Interval_47654 chr13 90820039 90820674 + 0 NA Intergenic Intergenic -42273 ENSMUSG00000114265.1 ENSMUSG00000114265 ENSMUST00000225134 Gm47521 processed_pseudogene Interval_113004 chr4 46736212 46737518 + 0 NA intron (ENSMUSG00000039809.10, intron 9 of 18) protein_coding-intron (ENSMUSG00000039809.10, intron 9 of 18) -86656 ENSMUSG00000039813.14 ENSMUSG00000039813 ENSMUST00000107750 Tbc1d2 protein_coding Interval_36645 chr12 51728601 51731004 + 0 NA intron (ENSMUSG00000020955.9, intron 4 of 5) protein_coding-intron (ENSMUSG00000020955.9, intron 4 of 5) 10540 ENSMUSG00000089346.1 ENSMUSG00000089346 ENSMUST00000158721 Gm22663 snRNA Interval_115111 chr4 90229988 90230610 + 0 NA Intergenic Intergenic 11479 ENSMUSG00000070902.5 ENSMUSG00000070902 ENSMUST00000080541 Zfp352 protein_coding Interval_68178 chr16 66874156 66874809 + 0 NA intron (ENSMUSG00000064115.13, intron 2 of 3) protein_coding-intron (ENSMUSG00000064115.13, intron 3 of 9) -18021 ENSMUSG00000045178.10 ENSMUSG00000045178 ENSMUST00000050665 4933411O13Rik antisense Interval_34166 chr11 121028839 121029330 + 0 NA promoter-TSS (ENSMUSG00000086835.2) antisense-promoter-TSS (ENSMUSG00000086835.2) -318 ENSMUSG00000086835.2 ENSMUSG00000086835 ENSMUST00000136500 Gm11775 antisense Interval_149145 chr7 94947755 94947991 + 0 NA Intergenic Intergenic -223991 ENSMUSG00000084636.1 ENSMUSG00000084636 ENSMUST00000122687 Gm23884 misc_RNA Interval_144492 chr7 25436222 25436681 + 0 NA intron (ENSMUSG00000053714.8, intron 4 of 6) antisense-intron (ENSMUSG00000053714.8, intron 4 of 6) 7012 ENSMUSG00000081732.1 ENSMUSG00000081732 ENSMUST00000117570 Gm15495 processed_pseudogene Interval_168164 chr9 77654855 77656183 + 0 NA exon (ENSMUSG00000044938.8, exon 3 of 3) protein_coding-exon (ENSMUSG00000044938.8, exon 3 of 3) 19019 ENSMUSG00000044938.8 ENSMUSG00000044938 ENSMUST00000057781 Klhl31 protein_coding Interval_77230 chr17 87486362 87486697 + 0 NA Intergenic Intergenic -4219 ENSMUSG00000100847.1 ENSMUSG00000100847 ENSMUST00000188990 Gm28676 lincRNA Interval_95757 chr2 115869256 115870543 + 0 NA intron (ENSMUSG00000027210.20, intron 3 of 6) protein_coding-intron (ENSMUSG00000027210.20, intron 9 of 11) -1032 ENSMUSG00000027210.20 ENSMUSG00000027210 ENSMUST00000138526 Meis2 protein_coding Interval_115095 chr4 89617693 89619145 + 0 NA Intergenic Intergenic -61017 ENSMUSG00000043753.2 ENSMUSG00000043753 ENSMUST00000052478 Dmrta1 protein_coding Interval_43627 chr13 34206393 34206687 + 0 NA intron (ENSMUSG00000038267.15, intron 4 of 9) protein_coding-intron (ENSMUSG00000038267.15, intron 4 of 10) 43576 ENSMUSG00000071451.10 ENSMUSG00000071451 ENSMUST00000147632 Psmg4 protein_coding Interval_39510 chr12 88992065 88992491 + 0 NA intron (ENSMUSG00000066392.12, intron 2 of 19) protein_coding-intron (ENSMUSG00000066392.12, intron 2 of 19) 263083 ENSMUSG00000103136.1 ENSMUSG00000103136 ENSMUST00000194420 Gm37980 TEC Interval_119418 chr4 137553704 137554105 + 0 NA intron (ENSMUSG00000028763.18, intron 74 of 96) protein_coding-intron (ENSMUSG00000028763.18, intron 74 of 96) 15618 ENSMUSG00000099134.1 ENSMUSG00000099134 ENSMUST00000184284 Mir7018 miRNA Interval_63314 chr15 100268284 100270747 + 0 NA Intergenic Intergenic -11326 ENSMUSG00000045631.10 ENSMUSG00000045631 ENSMUST00000230901 Tmprss12 protein_coding Interval_44687 chr13 47158378 47159010 + 0 NA intron (ENSMUSG00000038068.15, intron 1 of 7) protein_coding-intron (ENSMUSG00000038068.15, intron 1 of 7) -3686 ENSMUSG00000114882.1 ENSMUSG00000114882 ENSMUST00000225219 Gm48581 TEC Interval_26130 chr11 54669572 54669762 + 0 NA intron (ENSMUSG00000037533.20, intron 11 of 17) protein_coding-intron (ENSMUSG00000037533.20, intron 13 of 16) -11094 ENSMUSG00000093341.2 ENSMUSG00000093341 ENSMUST00000175600 Gm26116 miRNA Interval_76953 chr17 85142645 85143407 + 0 NA intron (ENSMUSG00000071037.6, intron 3 of 10) protein_coding-intron (ENSMUSG00000071037.6, intron 3 of 10) 52420 ENSMUSG00000071037.6 ENSMUSG00000071037 ENSMUST00000234501 Camkmt protein_coding Interval_15217 chr10 43422112 43422316 + 0 NA intron (ENSMUSG00000038240.13, intron 7 of 7) protein_coding-intron (ENSMUSG00000038240.13, intron 7 of 7) 9683 ENSMUSG00000110772.1 ENSMUSG00000110772 ENSMUST00000216518 Gm47856 TEC Interval_9280 chr1 155797134 155797469 + 0 NA intron (ENSMUSG00000033684.14, intron 2 of 12) protein_coding-intron (ENSMUSG00000033684.14, intron 2 of 11) 8177 ENSMUSG00000102299.1 ENSMUSG00000102299 ENSMUST00000192644 Gm37539 TEC Interval_10173 chr1 166365178 166365743 + 0 NA Intergenic Intergenic -13864 ENSMUSG00000026563.13 ENSMUSG00000026563 ENSMUST00000132817 Tada1 protein_coding Interval_92791 chr2 65448706 65450000 + 0 NA Intergenic Intergenic -59912 ENSMUSG00000086701.1 ENSMUSG00000086701 ENSMUST00000145994 Gm13595 antisense Interval_102373 chr3 22390097 22390267 + 0 NA Intergenic Intergenic 19869 ENSMUSG00000088846.1 ENSMUSG00000088846 ENSMUST00000158221 Gm26354 snoRNA Interval_107774 chr3 113886820 113887107 + 0 NA Intergenic Intergenic 32227 ENSMUSG00000106084.1 ENSMUSG00000106084 ENSMUST00000197877 Gm18163 processed_pseudogene Interval_102731 chr3 30650282 30650959 + 0 NA exon (ENSMUSG00000027703.16, exon 2 of 6) protein_coding-exon (ENSMUSG00000027703.16, exon 2 of 6) -2751 ENSMUSG00000027702.7 ENSMUSG00000027702 ENSMUST00000029252 Lrrc34 protein_coding Interval_7056 chr1 124298485 124298689 + 0 NA intron (ENSMUSG00000036815.17, intron 1 of 25) protein_coding-intron (ENSMUSG00000036815.17, intron 1 of 25) 80655 ENSMUSG00000103914.1 ENSMUSG00000103914 ENSMUST00000195141 Gm38073 TEC Interval_17978 chr10 81203117 81203318 + 0 NA intron (ENSMUSG00000085779.1, intron 1 of 1) antisense-intron (ENSMUSG00000085779.1, intron 1 of 2) -1166 ENSMUSG00000004939.7 ENSMUSG00000004939 ENSMUST00000005069 Nmrk2 protein_coding Interval_63138 chr15 99303421 99304093 + 0 NA intron (ENSMUSG00000023007.15, intron 2 of 23) protein_coding-intron (ENSMUSG00000023007.15, intron 1 of 24) -6146 ENSMUSG00000023007.15 ENSMUSG00000023007 ENSMUST00000126955 Prpf40b protein_coding Interval_92142 chr2 54039709 54040246 + 0 NA Intergenic Intergenic 45575 ENSMUSG00000075334.2 ENSMUSG00000075334 ENSMUST00000100089 Rprm protein_coding Interval_55932 chr14 102908126 102908674 + 0 NA Intergenic Intergenic -73642 ENSMUSG00000115816.1 ENSMUSG00000115816 ENSMUST00000227101 Gm34589 processed_transcript Interval_67962 chr16 61434349 61434775 + 0 NA Intergenic Intergenic -26400 ENSMUSG00000090448.1 ENSMUSG00000090448 ENSMUST00000169031 Gm17192 processed_pseudogene Interval_20701 chr10 120377395 120377678 + 0 NA intron (ENSMUSG00000056758.14, intron 3 of 5) antisense-intron (ENSMUSG00000034764.15, intron 2 of 2) -11987 ENSMUSG00000090191.1 ENSMUSG00000090191 ENSMUST00000161291 9230105E05Rik antisense Interval_777 chr1 10902798 10903348 + 0 NA Intergenic Intergenic -18597 ENSMUSG00000088585.1 ENSMUSG00000088585 ENSMUST00000157960 Gm22963 snoRNA Interval_33258 chr11 115506304 115506611 + 0 NA intron (ENSMUSG00000020737.12, intron 1 of 3) protein_coding-intron (ENSMUSG00000020737.12, intron 1 of 4) 7914 ENSMUSG00000020737.12 ENSMUSG00000020737 ENSMUST00000142238 Jpt1 protein_coding Interval_15124 chr10 42693642 42693888 + 0 NA intron (ENSMUSG00000038280.12, intron 3 of 3) protein_coding-intron (ENSMUSG00000038280.12, intron 3 of 5) 4753 ENSMUSG00000086434.1 ENSMUSG00000086434 ENSMUST00000149950 Gm15200 antisense Interval_57696 chr15 15875467 15875890 + 0 NA promoter-TSS (ENSMUSG00000115524.1) processed_pseudogene-promoter-TSS (ENSMUSG00000115524.1) -113 ENSMUSG00000115524.1 ENSMUSG00000115524 ENSMUST00000228560 Gm49122 processed_pseudogene Interval_7638 chr1 132720167 132720895 + 0 NA intron (ENSMUSG00000026442.14, intron 1 of 2) protein_coding-intron (ENSMUSG00000026442.14, intron 1 of 29) -8824 ENSMUSG00000101126.1 ENSMUSG00000101126 ENSMUST00000189499 Gm10538 antisense Interval_168921 chr9 88926498 88926913 + 0 NA intron (ENSMUSG00000099930.1, intron 6 of 23) processed_transcript-intron (ENSMUSG00000099930.1, intron 6 of 23) 8873 ENSMUSG00000077554.1 ENSMUSG00000077554 ENSMUST00000104366 Gm23707 snoRNA Interval_51507 chr14 28980634 28980966 + 0 NA intron (ENSMUSG00000021991.9, intron 29 of 37) protein_coding-intron (ENSMUSG00000021991.9, intron 29 of 37) 28999 ENSMUSG00000088682.1 ENSMUSG00000088682 ENSMUST00000158057 Gm23999 rRNA Interval_171812 chr9 121398250 121398675 + 0 NA intron (ENSMUSG00000032536.12, intron 3 of 16) protein_coding-intron (ENSMUSG00000032536.12, intron 2 of 15) 51906 ENSMUSG00000110738.1 ENSMUSG00000110738 ENSMUST00000214815 Gm47092 TEC Interval_143148 chr7 3674682 3675346 + 0 NA TTS (ENSMUSG00000019734.16) protein_coding-TTS (ENSMUSG00000019734.16) 1613 ENSMUSG00000019734.16 ENSMUSG00000019734 ENSMUST00000130689 Tmc4 protein_coding Interval_137410 chr6 71963966 71964210 + 0 NA promoter-TSS (ENSMUSG00000097133.1) antisense-promoter-TSS (ENSMUSG00000097133.1) -313 ENSMUSG00000097133.1 ENSMUSG00000097133 ENSMUST00000181028 Gm26628 antisense Interval_143858 chr7 16784652 16784929 + 0 NA promoter-TSS (ENSMUSG00000001918.17) protein_coding-promoter-TSS (ENSMUSG00000001918.17) 2392 ENSMUSG00000001918.17 ENSMUSG00000001918 ENSMUST00000141349 Slc1a5 protein_coding Interval_51947 chr14 34173741 34174107 + 0 NA Intergenic Intergenic 2385 ENSMUSG00000115673.1 ENSMUSG00000115673 ENSMUST00000228606 Gm18884 processed_pseudogene Interval_61382 chr15 81246945 81247203 + 0 NA intron (ENSMUSG00000115970.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000115970.1, intron 1 of 1) 4788 ENSMUSG00000115970.1 ENSMUSG00000115970 ENSMUST00000230042 8430426J06Rik lincRNA Interval_133388 chr6 4600103 4601958 + 0 NA promoter-TSS (ENSMUSG00000015189.12) protein_coding-promoter-TSS (ENSMUSG00000015189.12) -4379 ENSMUSG00000097513.1 ENSMUSG00000097513 ENSMUST00000181941 Gm26696 TEC Interval_9283 chr1 155812190 155813479 + 0 NA promoter-TSS (ENSMUSG00000033684.14) protein_coding-promoter-TSS (ENSMUSG00000033684.14) -5660 ENSMUSG00000102558.1 ENSMUSG00000102558 ENSMUST00000195048 Gm37571 antisense Interval_60517 chr15 74587994 74590531 + 0 NA TTS (ENSMUSG00000034730.17) protein_coding-TTS (ENSMUSG00000034730.17) 1338 ENSMUSG00000034730.17 ENSMUSG00000034730 ENSMUST00000230935 Adgrb1 protein_coding Interval_85262 chr19 24221362 24221805 + 0 NA intron (ENSMUSG00000024812.11, intron 1 of 23) protein_coding-intron (ENSMUSG00000024812.11, intron 1 of 22) 56588 ENSMUSG00000059363.10 ENSMUSG00000059363 ENSMUST00000132688 Fxn protein_coding Interval_95658 chr2 113656644 113656911 + 0 NA intron (ENSMUSG00000044042.19, intron 14 of 17) protein_coding-intron (ENSMUSG00000044042.19, intron 13 of 16) 51773 ENSMUSG00000084798.1 ENSMUSG00000084798 ENSMUST00000123377 4930533B01Rik antisense Interval_74097 chr17 46563442 46563707 + 0 NA TTS (ENSMUSG00000023972.10) protein_coding-TTS (ENSMUSG00000023972.10) 9376 ENSMUSG00000023972.10 ENSMUSG00000023972 ENSMUST00000044442 Ptk7 protein_coding Interval_54825 chr14 75536669 75536924 + 0 NA Intergenic Intergenic 56320 ENSMUSG00000034913.10 ENSMUSG00000034913 ENSMUST00000226623 Cby2 protein_coding Interval_85629 chr19 29178764 29179137 + 0 NA Intergenic Intergenic 18832 ENSMUSG00000068466.6 ENSMUSG00000068466 ENSMUST00000084171 Gm5518 processed_pseudogene Interval_90756 chr2 32317653 32319006 + 0 NA promoter-TSS (ENSMUSG00000026825.17) protein_coding-promoter-TSS (ENSMUSG00000026825.17) 64 ENSMUSG00000092765.3 ENSMUSG00000092765 ENSMUST00000175024 Gm23363 miRNA Interval_3990 chr1 65654597 65654924 + 0 NA Intergenic Intergenic 102078 ENSMUSG00000082774.1 ENSMUSG00000082774 ENSMUST00000117848 Gm8805 processed_pseudogene Interval_86471 chr19 40844840 40845990 + 0 NA intron (ENSMUSG00000025010.14, intron 4 of 4) protein_coding-intron (ENSMUSG00000025010.14, intron 5 of 5) 14107 ENSMUSG00000025010.14 ENSMUSG00000025010 ENSMUST00000119316 Ccnj protein_coding Interval_107887 chr3 116601543 116603100 + 0 NA exon (ENSMUSG00000027959.14, exon 2 of 4) protein_coding-exon (ENSMUSG00000027959.14, exon 2 of 4) -18845 ENSMUSG00000033439.12 ENSMUSG00000033439 ENSMUST00000198103 Trmt13 protein_coding Interval_94851 chr2 97114954 97115191 + 0 NA intron (ENSMUSG00000050587.14, intron 4 of 6) protein_coding-intron (ENSMUSG00000050587.14, intron 4 of 6) -2342 ENSMUSG00000084460.1 ENSMUSG00000084460 ENSMUST00000122511 Gm22957 snoRNA Interval_155877 chr8 40566132 40567234 + 0 NA intron (ENSMUSG00000039431.16, intron 7 of 11) protein_coding-intron (ENSMUSG00000039431.16, intron 7 of 14) 23259 ENSMUSG00000031600.11 ENSMUSG00000031600 ENSMUST00000238628 Vps37a protein_coding Interval_13218 chr10 13149797 13150245 + 0 NA exon (ENSMUSG00000019815.7, exon 6 of 6) protein_coding-exon (ENSMUSG00000019815.7, exon 6 of 6) 28002 ENSMUSG00000019815.7 ENSMUSG00000019815 ENSMUST00000219970 Zc2hc1b protein_coding Interval_77342 chr17 88081600 88081910 + 0 NA Intergenic Intergenic -16512 ENSMUSG00000005371.15 ENSMUSG00000005371 ENSMUST00000235056 Fbxo11 protein_coding Interval_159361 chr8 94063731 94064435 + 0 NA intron (ENSMUSG00000033009.15, intron 12 of 12) protein_coding-intron (ENSMUSG00000033009.15, intron 12 of 12) 15302 ENSMUSG00000110499.1 ENSMUSG00000110499 ENSMUST00000211865 Gm45873 TEC Interval_25392 chr11 47307289 47307608 + 0 NA intron (ENSMUSG00000020354.15, intron 2 of 6) protein_coding-intron (ENSMUSG00000020354.15, intron 2 of 7) -233984 ENSMUSG00000082792.1 ENSMUSG00000082792 ENSMUST00000121420 Gm12176 processed_pseudogene Interval_47180 chr13 77199465 77199730 + 0 NA intron (ENSMUSG00000071252.6, intron 1 of 3) protein_coding-intron (ENSMUSG00000071252.6, intron 4 of 19) 30219 ENSMUSG00000114256.1 ENSMUSG00000114256 ENSMUST00000225012 Gm29844 processed_pseudogene Interval_149653 chr7 100427629 100427927 + 0 NA intron (ENSMUSG00000047248.20, intron 14 of 24) protein_coding-intron (ENSMUSG00000047248.20, intron 20 of 32) -30682 ENSMUSG00000102241.1 ENSMUSG00000102241 ENSMUST00000193553 Gm37716 TEC Interval_4344 chr1 72839370 72840134 + 0 NA intron (ENSMUSG00000039323.18, intron 1 of 3) protein_coding-intron (ENSMUSG00000039323.18, intron 1 of 3) -8947 ENSMUSG00000039323.18 ENSMUSG00000039323 ENSMUST00000155703 Igfbp2 protein_coding Interval_50212 chr14 10086207 10086473 + 0 NA intron (ENSMUSG00000060579.13, intron 1 of 5) protein_coding-intron (ENSMUSG00000060579.13, intron 5 of 9) -67669 ENSMUSG00000114467.1 ENSMUSG00000114467 ENSMUST00000223773 Gm48430 TEC Interval_34616 chr12 7990911 7991447 + 0 NA intron (ENSMUSG00000020609.14, intron 14 of 28) protein_coding-intron (ENSMUSG00000020609.14, intron 13 of 27) 13531 ENSMUSG00000020609.14 ENSMUSG00000020609 ENSMUST00000171239 Apob protein_coding Interval_46365 chr13 64248208 64249326 + 0 NA promoter-TSS (ENSMUSG00000033102.15) protein_coding-promoter-TSS (ENSMUSG00000033102.15) 39 ENSMUSG00000097101.3 ENSMUSG00000097101 ENSMUST00000189419 1810034E14Rik antisense Interval_12889 chr10 7332600 7334187 + 0 NA Intergenic Intergenic 57390 ENSMUSG00000112057.1 ENSMUSG00000112057 ENSMUST00000220179 Gm21321 processed_pseudogene Interval_124120 chr5 38487792 38489455 + 0 NA intron (ENSMUSG00000005107.13, intron 2 of 13) protein_coding-intron (ENSMUSG00000005107.13, intron 1 of 10) -8441 ENSMUSG00000005107.13 ENSMUSG00000005107 ENSMUST00000156076 Slc2a9 protein_coding Interval_165780 chr9 52802747 52804131 + 0 NA Intergenic Intergenic 39428 ENSMUSG00000110833.1 ENSMUSG00000110833 ENSMUST00000216112 Gm47981 processed_pseudogene Interval_168837 chr9 87867873 87868142 + 0 NA Intergenic Intergenic 20580 ENSMUSG00000093937.1 ENSMUSG00000093937 ENSMUST00000180264 Gm25528 snoRNA Interval_81542 chr18 61592360 61596192 + 0 NA Intergenic Intergenic 38937 ENSMUSG00000024576.14 ENSMUSG00000024576 ENSMUST00000170482 Csnk1a1 protein_coding Interval_145534 chr7 35435239 35436287 + 0 NA intron (ENSMUSG00000023072.14, intron 3 of 3) protein_coding-intron (ENSMUSG00000023072.14, intron 18 of 18) 9474 ENSMUSG00000100776.1 ENSMUSG00000100776 ENSMUST00000185699 Gm18254 unprocessed_pseudogene Interval_153845 chr8 9692003 9692881 + 0 NA intron (ENSMUSG00000079157.4, intron 1 of 3) protein_coding-intron (ENSMUSG00000079157.4, intron 1 of 2) -2166 ENSMUSG00000109162.1 ENSMUSG00000109162 ENSMUST00000207411 2900027M19Rik TEC Interval_124472 chr5 48555950 48556222 + 0 NA intron (ENSMUSG00000029088.16, intron 1 of 8) protein_coding-intron (ENSMUSG00000029088.16, intron 1 of 8) -18145 ENSMUSG00000105653.1 ENSMUSG00000105653 ENSMUST00000200461 Gm43831 TEC Interval_149574 chr7 99755821 99756358 + 0 NA Intergenic Intergenic -7418 ENSMUSG00000073997.3 ENSMUSG00000073997 ENSMUST00000098263 Olfr521 protein_coding Interval_86024 chr19 34993122 34993382 + 0 NA Intergenic Intergenic 18105 ENSMUSG00000024795.11 ENSMUSG00000024795 ENSMUST00000225625 Kif20b protein_coding Interval_65433 chr16 22312279 22313959 + 0 NA Intergenic Intergenic 16981 ENSMUSG00000116857.2 ENSMUSG00000116857 ENSMUST00000231661 Gm49582 unprocessed_pseudogene Interval_113148 chr4 48625042 48625725 + 0 NA intron (ENSMUSG00000028347.14, intron 5 of 9) protein_coding-intron (ENSMUSG00000028347.14, intron 5 of 9) -11551 ENSMUSG00000028347.14 ENSMUSG00000028347 ENSMUST00000141720 Tmeff1 protein_coding Interval_12511 chr1 194637541 194638094 + 0 NA intron (ENSMUSG00000026640.12, intron 1 of 31) protein_coding-intron (ENSMUSG00000026640.12, intron 1 of 31) -12502 ENSMUSG00000102523.1 ENSMUSG00000102523 ENSMUST00000192025 Gm37783 TEC Interval_152257 chr7 130981936 130983192 + 0 NA promoter-TSS (ENSMUSG00000006205.13) protein_coding-promoter-TSS (ENSMUSG00000006205.13) 39075 ENSMUSG00000006205.13 ENSMUSG00000006205 ENSMUST00000150905 Htra1 protein_coding Interval_153360 chr7 143919123 143919974 + 0 NA Intergenic Intergenic -13567 ENSMUSG00000099321.1 ENSMUSG00000099321 ENSMUST00000183699 Mir6404 miRNA Interval_161405 chr8 120281485 120281702 + 0 NA intron (ENSMUSG00000031822.20, intron 1 of 2) protein_coding-intron (ENSMUSG00000092329.1, intron 1 of 15) -53363 ENSMUSG00000097960.1 ENSMUSG00000097960 ENSMUST00000183235 A330074K22Rik lincRNA Interval_143060 chr6 148985890 148986601 + 0 NA Intergenic Intergenic -17670 ENSMUSG00000082633.1 ENSMUSG00000082633 ENSMUST00000117470 Gm15779 processed_pseudogene Interval_118890 chr4 134286495 134288289 + 0 NA promoter-TSS (ENSMUSG00000050890.15) protein_coding-promoter-TSS (ENSMUSG00000050890.15) -167 ENSMUSG00000050890.15 ENSMUSG00000050890 ENSMUST00000142504 Pdik1l protein_coding Interval_167983 chr9 75260848 75261804 + 0 NA intron (ENSMUSG00000033590.8, intron 10 of 40) protein_coding-intron (ENSMUSG00000033590.8, intron 10 of 40) 29250 ENSMUSG00000033590.8 ENSMUSG00000033590 ENSMUST00000216529 Myo5c protein_coding Interval_66431 chr16 33818426 33819525 + 0 NA exon (ENSMUSG00000022824.12, exon 12 of 12) protein_coding-exon (ENSMUSG00000022824.12, exon 12 of 12) 5305 ENSMUSG00000116916.1 ENSMUSG00000116916 ENSMUST00000231807 Gm34967 processed_pseudogene Interval_100830 chr2 172770706 172771361 + 0 NA Intergenic Intergenic 93308 ENSMUSG00000093160.1 ENSMUSG00000093160 ENSMUST00000175419 Gm22773 miRNA Interval_55034 chr14 77297086 77297512 + 0 NA intron (ENSMUSG00000022012.9, intron 2 of 2) protein_coding-intron (ENSMUSG00000022012.9, intron 2 of 18) -44985 ENSMUSG00000063556.5 ENSMUSG00000063556 ENSMUST00000099431 Gm10132 processed_pseudogene Interval_156671 chr8 56641896 56642297 + 0 NA Intergenic Intergenic 54176 ENSMUSG00000038206.13 ENSMUSG00000038206 ENSMUST00000211294 Fbxo8 protein_coding Interval_121023 chr4 152282839 152283878 + 0 NA exon (ENSMUSG00000042804.13, exon 5 of 5) protein_coding-exon (ENSMUSG00000042804.13, exon 5 of 5) 988 ENSMUSG00000042804.13 ENSMUSG00000042804 ENSMUST00000144035 Gpr153 protein_coding Interval_94366 chr2 90533856 90534233 + 0 NA intron (ENSMUSG00000025314.16, intron 1 of 23) protein_coding-intron (ENSMUSG00000025314.16, intron 1 of 23) 46603 ENSMUSG00000025314.16 ENSMUSG00000025314 ENSMUST00000168621 Ptprj protein_coding Interval_127404 chr5 103752902 103754741 + 0 NA promoter-TSS (ENSMUSG00000029313.18) protein_coding-promoter-TSS (ENSMUSG00000029313.18) -743 ENSMUSG00000029313.18 ENSMUSG00000029313 ENSMUST00000152145 Aff1 protein_coding Interval_41083 chr12 111077047 111077519 + 0 NA intron (ENSMUSG00000037896.17, intron 2 of 11) protein_coding-intron (ENSMUSG00000037896.17, intron 2 of 11) -9255 ENSMUSG00000114110.1 ENSMUSG00000114110 ENSMUST00000222551 Gm46379 processed_pseudogene Interval_25679 chr11 50732397 50732791 + 0 NA intron (ENSMUSG00000036545.9, intron 3 of 20) protein_coding-intron (ENSMUSG00000036545.9, intron 3 of 21) -7050 ENSMUSG00000085902.1 ENSMUSG00000085902 ENSMUST00000144876 Gm12200 antisense Interval_29552 chr11 84861234 84862523 + 0 NA intron (ENSMUSG00000020530.14, intron 3 of 13) protein_coding-intron (ENSMUSG00000020530.14, intron 3 of 14) 8860 ENSMUSG00000020530.14 ENSMUSG00000020530 ENSMUST00000167429 Ggnbp2 protein_coding Interval_139980 chr6 113171678 113173054 + 0 NA intron (ENSMUSG00000042873.11, intron 3 of 3) protein_coding-intron (ENSMUSG00000042873.11, intron 3 of 3) 21577 ENSMUSG00000042873.11 ENSMUSG00000042873 ENSMUST00000203665 Lhfpl4 protein_coding Interval_121696 chr5 5379597 5381243 + 0 NA promoter-TSS (ENSMUSG00000028926.15) protein_coding-promoter-TSS (ENSMUSG00000028926.15) -227 ENSMUSG00000028926.15 ENSMUSG00000028926 ENSMUST00000200637 Cdk14 protein_coding Interval_48848 chr13 104032030 104033039 + 0 NA intron (ENSMUSG00000021710.11, intron 2 of 2) protein_coding-intron (ENSMUSG00000021710.11, intron 12 of 12) 2039 ENSMUSG00000021710.11 ENSMUSG00000021710 ENSMUST00000224086 Nln protein_coding Interval_32279 chr11 106665630 106666583 + 0 NA intron (ENSMUSG00000020717.19, intron 13 of 14) protein_coding-intron (ENSMUSG00000020717.19, intron 15 of 15) -2780 ENSMUSG00000020717.19 ENSMUSG00000020717 ENSMUST00000124958 Pecam1 protein_coding Interval_64175 chr16 8848480 8849024 + 0 NA intron (ENSMUSG00000022507.6, intron 3 of 3) protein_coding-intron (ENSMUSG00000022507.6, intron 3 of 3) 17431 ENSMUSG00000022507.6 ENSMUSG00000022507 ENSMUST00000229318 1810013L24Rik protein_coding Interval_53748 chr14 61439164 61440491 + 0 NA promoter-TSS (ENSMUSG00000021929.9) protein_coding-promoter-TSS (ENSMUSG00000021929.9) -19440 ENSMUSG00000115618.1 ENSMUSG00000115618 ENSMUST00000228542 Gm49298 processed_pseudogene Interval_34188 chr11 121176030 121177247 + 0 NA TTS (ENSMUSG00000025169.6) protein_coding-TTS (ENSMUSG00000025169.6) -10713 ENSMUSG00000081835.1 ENSMUSG00000081835 ENSMUST00000119569 Gm11790 processed_pseudogene Interval_3348 chr1 57340849 57341204 + 0 NA Intergenic Intergenic 36518 ENSMUSG00000097519.2 ENSMUSG00000097519 ENSMUST00000181949 4930558J18Rik lincRNA Interval_81511 chr18 61285274 61285969 + 0 NA intron (ENSMUSG00000024575.16, intron 4 of 5) protein_coding-intron (ENSMUSG00000024575.16, intron 20 of 21) 10598 ENSMUSG00000024575.16 ENSMUSG00000024575 ENSMUST00000135688 Pde6a protein_coding Interval_117707 chr4 125685827 125686365 + 0 NA exon (ENSMUSG00000001985.9, exon 11 of 16) protein_coding-exon (ENSMUSG00000001985.9, exon 11 of 16) 181347 ENSMUSG00000094403.1 ENSMUSG00000094403 ENSMUST00000102081 Mir692-2 miRNA Interval_44122 chr13 41026012 41026470 + 0 NA TTS (ENSMUSG00000021363.14) protein_coding-TTS (ENSMUSG00000021363.14) 9949 ENSMUSG00000021361.7 ENSMUSG00000021361 ENSMUST00000021790 Tmem14c protein_coding Interval_121446 chr4 155840817 155842019 + 0 NA promoter-TSS (ENSMUSG00000029070.9) protein_coding-promoter-TSS (ENSMUSG00000029070.9) -886 ENSMUSG00000029070.9 ENSMUSG00000029070 ENSMUST00000132142 Mxra8 protein_coding Interval_57252 chr15 8148235 8148649 + 0 NA TTS (ENSMUSG00000022142.8) protein_coding-TTS (ENSMUSG00000022142.8) -2641 ENSMUSG00000022142.8 ENSMUSG00000022142 ENSMUST00000230647 Nup155 protein_coding Interval_5824 chr1 92232039 92233294 + 0 NA Intergenic Intergenic -36972 ENSMUSG00000026313.16 ENSMUSG00000026313 ENSMUST00000212408 Hdac4 protein_coding Interval_53866 chr14 62939572 62939978 + 0 NA intron (ENSMUSG00000014547.10, intron 6 of 11) protein_coding-intron (ENSMUSG00000014547.10, intron 6 of 11) -34015 ENSMUSG00000114403.1 ENSMUSG00000114403 ENSMUST00000225378 Gm21021 processed_pseudogene Interval_27536 chr11 68513427 68513599 + 0 NA intron (ENSMUSG00000046207.14, intron 1 of 19) protein_coding-intron (ENSMUSG00000046207.14, intron 1 of 19) 10422 ENSMUSG00000046207.14 ENSMUSG00000046207 ENSMUST00000131669 Pik3r6 protein_coding Interval_78590 chr18 14967355 14967571 + 0 NA Intergenic Intergenic -21532 ENSMUSG00000117450.1 ENSMUSG00000117450 ENSMUST00000234445 4933424G05Rik antisense Interval_43459 chr13 31352632 31353267 + 0 NA promoter-TSS (ENSMUSG00000088693.1) snoRNA-promoter-TSS (ENSMUSG00000088693.1) -31 ENSMUSG00000088693.1 ENSMUSG00000088693 ENSMUST00000158068 Gm22330 snoRNA Interval_169900 chr9 102825231 102825802 + 0 NA Intergenic Intergenic -4566 ENSMUSG00000111395.1 ENSMUSG00000111395 ENSMUST00000214802 Gm18655 processed_pseudogene Interval_133167 chr5 150281850 150282684 + 0 NA intron (ENSMUSG00000056602.12, intron 1 of 60) protein_coding-intron (ENSMUSG00000056602.12, intron 1 of 60) -13121 ENSMUSG00000056602.12 ENSMUSG00000056602 ENSMUST00000201628 Fry protein_coding Interval_8251 chr1 136737478 136738492 + 0 NA Intergenic Intergenic 19624 ENSMUSG00000096432.1 ENSMUSG00000096432 ENSMUST00000175316 Gm22132 miRNA Interval_68797 chr16 86882698 86883429 + 0 NA Intergenic Intergenic 37593 ENSMUSG00000089252.1 ENSMUSG00000089252 ENSMUST00000158627 Gm25715 snoRNA Interval_28946 chr11 79460486 79460727 + 0 NA intron (ENSMUSG00000020716.16, intron 30 of 56) protein_coding-intron (ENSMUSG00000020716.16, intron 30 of 57) -8159 ENSMUSG00000082529.1 ENSMUSG00000082529 ENSMUST00000118691 Gm11199 processed_pseudogene Interval_115334 chr4 96786075 96787305 + 0 NA Intergenic Intergenic -1504 ENSMUSG00000078639.1 ENSMUSG00000078639 ENSMUST00000107071 Gm12695 protein_coding Interval_18508 chr10 86808582 86808841 + 0 NA intron (ENSMUSG00000112743.1, intron 2 of 13) protein_coding-intron (ENSMUSG00000054027.8, intron 2 of 13) -16392 ENSMUSG00000054027.8 ENSMUSG00000054027 ENSMUST00000218792 Nt5dc3 protein_coding Interval_119728 chr4 139548414 139548754 + 0 NA intron (ENSMUSG00000041025.15, intron 4 of 11) protein_coding-intron (ENSMUSG00000041025.15, intron 3 of 10) -26136 ENSMUSG00000041025.15 ENSMUSG00000041025 ENSMUST00000174078 Iffo2 protein_coding Interval_3405 chr1 58029451 58031596 + 0 NA intron (ENSMUSG00000063558.4, intron 1 of 14) protein_coding-intron (ENSMUSG00000063558.4, intron 1 of 34) 559 ENSMUSG00000063558.4 ENSMUSG00000063558 ENSMUST00000160168 Aox1 protein_coding Interval_65316 chr16 21469493 21471570 + 0 NA intron (ENSMUSG00000033653.18, intron 1 of 31) protein_coding-intron (ENSMUSG00000033653.18, intron 15 of 43) -62581 ENSMUSG00000033653.18 ENSMUSG00000033653 ENSMUST00000127903 Vps8 protein_coding Interval_121937 chr5 10301210 10301870 + 0 NA intron (ENSMUSG00000105157.1, intron 1 of 3) lincRNA-intron (ENSMUSG00000105157.1, intron 1 of 3) 52448 ENSMUSG00000105157.1 ENSMUSG00000105157 ENSMUST00000196240 Gm31831 lincRNA Interval_132741 chr5 147516539 147516869 + 0 NA promoter-TSS (ENSMUSG00000029647.15) protein_coding-promoter-TSS (ENSMUSG00000029647.15) 77314 ENSMUSG00000107085.1 ENSMUSG00000107085 ENSMUST00000202594 Gm42883 processed_pseudogene Interval_154407 chr8 15821467 15822122 + 0 NA Intergenic Intergenic -55870 ENSMUSG00000109757.1 ENSMUSG00000109757 ENSMUST00000211639 Gm7128 processed_pseudogene Interval_141582 chr6 129630292 129630538 + 0 NA Intergenic Intergenic -6555 ENSMUSG00000030149.15 ENSMUSG00000030149 ENSMUST00000204694 Klrk1 protein_coding Interval_142873 chr6 146610734 146612117 + 0 NA intron (ENSMUSG00000040234.16, intron 5 of 5) protein_coding-intron (ENSMUSG00000040234.16, intron 7 of 11) -31166 ENSMUSG00000030291.12 ENSMUSG00000030291 ENSMUST00000075077 Med21 protein_coding Interval_15964 chr10 59710060 59710565 + 0 NA intron (ENSMUSG00000020111.15, intron 1 of 7) protein_coding-intron (ENSMUSG00000020111.15, intron 1 of 13) 1522 ENSMUSG00000090350.1 ENSMUSG00000090350 ENSMUST00000164702 Gm17148 processed_pseudogene Interval_99246 chr2 158354033 158355243 + 0 NA TTS (ENSMUSG00000085385.7) processed_transcript-TTS (ENSMUSG00000085385.7) 1916 ENSMUSG00000065362.1 ENSMUSG00000065362 ENSMUST00000083428 Gm24411 snoRNA Interval_58152 chr15 29804100 29804519 + 0 NA Intergenic Intergenic 84165 ENSMUSG00000088621.1 ENSMUSG00000088621 ENSMUST00000157996 Gm23033 snoRNA Interval_151419 chr7 122239087 122239495 + 0 NA Intergenic Intergenic 10734 ENSMUSG00000108708.1 ENSMUSG00000108708 ENSMUST00000206804 Gm29977 processed_pseudogene Interval_124225 chr5 41740854 41741090 + 0 NA Intergenic Intergenic 23529 ENSMUSG00000049691.8 ENSMUSG00000049691 ENSMUST00000060820 Nkx3-2 protein_coding Interval_86822 chr19 44111715 44112381 + 0 NA intron (ENSMUSG00000025200.7, intron 1 of 2) protein_coding-intron (ENSMUSG00000025200.7, intron 13 of 13) 2076 ENSMUSG00000077391.1 ENSMUSG00000077391 ENSMUST00000104203 Gm24336 snoRNA Interval_31122 chr11 98285542 98286570 + 0 NA exon (ENSMUSG00000093673.1, exon 1 of 1) sense_overlapping-exon (ENSMUSG00000093673.1, exon 1 of 1) 674 ENSMUSG00000093673.1 ENSMUSG00000093673 ENSMUST00000176721 Gm20644 sense_overlapping Interval_164633 chr9 40214881 40215263 + 0 NA Intergenic Intergenic 22743 ENSMUSG00000025602.13 ENSMUSG00000025602 ENSMUST00000168832 Zfp202 protein_coding Interval_78488 chr18 13599837 13600503 + 0 NA intron (ENSMUSG00000117608.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000117608.1, intron 1 of 5) 1230 ENSMUSG00000117608.1 ENSMUSG00000117608 ENSMUST00000234112 AC103362.1 lincRNA Interval_62107 chr15 86746212 86746560 + 0 NA intron (ENSMUSG00000116171.1, intron 3 of 4) lincRNA-intron (ENSMUSG00000116171.1, intron 3 of 4) 8560 ENSMUSG00000116171.1 ENSMUSG00000116171 ENSMUST00000230110 4930543I03Rik lincRNA Interval_136349 chr6 53617849 53618995 + 0 NA intron (ENSMUSG00000053007.9, intron 3 of 6) protein_coding-intron (ENSMUSG00000053007.9, intron 7 of 10) -49348 ENSMUSG00000108004.1 ENSMUSG00000108004 ENSMUST00000204451 Gm44080 TEC Interval_29723 chr11 86409747 86410977 + 0 NA Intergenic Intergenic 1536 ENSMUSG00000088091.1 ENSMUSG00000088091 ENSMUST00000157466 Gm23667 rRNA Interval_83635 chr19 3357720 3358060 + 0 NA intron (ENSMUSG00000024900.5, intron 4 of 6) protein_coding-intron (ENSMUSG00000024900.5, intron 4 of 18) -18454 ENSMUSG00000024900.5 ENSMUSG00000024900 ENSMUST00000238027 Cpt1a protein_coding Interval_11723 chr1 184886200 184886528 + 0 NA Intergenic Intergenic -3146 ENSMUSG00000039349.5 ENSMUSG00000039349 ENSMUST00000048308 C130074G19Rik protein_coding Interval_17043 chr10 70830652 70831256 + 0 NA intron (ENSMUSG00000112870.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000112870.1, intron 1 of 2) 199 ENSMUSG00000112870.1 ENSMUSG00000112870 ENSMUST00000218006 Gm40689 lincRNA Interval_77182 chr17 87157286 87158223 + 0 NA Intergenic Intergenic 26471 ENSMUSG00000095035.1 ENSMUSG00000095035 ENSMUST00000116918 Gm22346 miRNA Interval_86225 chr19 37920878 37921850 + 0 NA exon (ENSMUSG00000048612.16, exon 41 of 53) protein_coding-exon (ENSMUSG00000048612.16, exon 41 of 53) 51094 ENSMUSG00000118115.1 ENSMUSG00000118115 ENSMUST00000237198 Gm4757 processed_pseudogene Interval_138266 chr6 86724672 86725016 + 0 NA intron (ENSMUSG00000001157.13, intron 2 of 4) protein_coding-intron (ENSMUSG00000001157.13, intron 2 of 13) -7951 ENSMUSG00000001157.13 ENSMUSG00000001157 ENSMUST00000113679 Gmcl1 protein_coding Interval_41622 chr12 117071831 117072101 + 0 NA intron (ENSMUSG00000056553.14, intron 13 of 13) protein_coding-intron (ENSMUSG00000056553.14, intron 12 of 22) 79249 ENSMUSG00000099907.1 ENSMUSG00000099907 ENSMUST00000186114 Gm10421 processed_transcript Interval_160015 chr8 105770271 105771034 + 0 NA exon (ENSMUSG00000037415.7, exon 14 of 14) protein_coding-exon (ENSMUSG00000037415.7, exon 14 of 14) -12022 ENSMUSG00000013150.15 ENSMUSG00000013150 ENSMUST00000135959 Gfod2 protein_coding Interval_174680 chrX 162854219 162854551 + 0 NA Intergenic Intergenic -4121 ENSMUSG00000088195.1 ENSMUSG00000088195 ENSMUST00000157570 Gm23901 snRNA Interval_154206 chr8 13434887 13435227 + 0 NA promoter-TSS (ENSMUSG00000038457.17) protein_coding-promoter-TSS (ENSMUSG00000038457.17) -132 ENSMUSG00000038457.17 ENSMUSG00000038457 ENSMUST00000209950 Tmem255b protein_coding Interval_116242 chr4 108989491 108990764 + 0 NA Intergenic Intergenic 8579 ENSMUSG00000088285.1 ENSMUSG00000088285 ENSMUST00000157660 Gm23589 snRNA Interval_76863 chr17 84596027 84597470 + 0 NA intron (ENSMUSG00000040852.6, intron 21 of 29) protein_coding-intron (ENSMUSG00000040852.6, intron 21 of 29) 21198 ENSMUSG00000040852.6 ENSMUSG00000040852 ENSMUST00000235090 Plekhh2 protein_coding Interval_56817 chr14 122257313 122257638 + 0 NA promoter-TSS (ENSMUSG00000025545.10) protein_coding-promoter-TSS (ENSMUSG00000025545.10) -566 ENSMUSG00000025545.10 ENSMUSG00000025545 ENSMUST00000226136 Clybl protein_coding Interval_170610 chr9 109513306 109513589 + 0 NA Intergenic Intergenic 20597 ENSMUSG00000104572.5 ENSMUSG00000104572 ENSMUST00000198015 Fbxw23 transcribed_unprocessed_pseudogene Interval_67721 chr16 56271679 56272114 + 0 NA TTS (ENSMUSG00000035270.15) protein_coding-TTS (ENSMUSG00000035270.15) 65482 ENSMUSG00000116998.1 ENSMUSG00000116998 ENSMUST00000231232 Gm21050 processed_pseudogene Interval_106705 chr3 99233921 99236219 + 0 NA intron (ENSMUSG00000004233.14, intron 4 of 8) protein_coding-intron (ENSMUSG00000004233.14, intron 4 of 8) -5311 ENSMUSG00000027868.11 ENSMUSG00000027868 ENSMUST00000150756 Tbx15 protein_coding Interval_157199 chr8 67591902 67592921 + 0 NA Intergenic Intergenic -7221 ENSMUSG00000110452.1 ENSMUSG00000110452 ENSMUST00000211834 Gm36247 processed_pseudogene Interval_26992 chr11 62241034 62241283 + 0 NA Intergenic Intergenic -7826 ENSMUSG00000018500.2 ENSMUSG00000018500 ENSMUST00000018644 Adora2b protein_coding Interval_53582 chr14 59562844 59563223 + 0 NA TTS (ENSMUSG00000021982.14) protein_coding-TTS (ENSMUSG00000021982.14) 34906 ENSMUSG00000021982.14 ENSMUSG00000021982 ENSMUST00000223842 Cdadc1 protein_coding Interval_160459 chr8 109662471 109663368 + 0 NA intron (ENSMUSG00000048827.12, intron 8 of 15) protein_coding-intron (ENSMUSG00000048827.12, intron 26 of 31) 30341 ENSMUSG00000031729.6 ENSMUSG00000031729 ENSMUST00000212170 Ist1 protein_coding Interval_55541 chr14 91414578 91414890 + 0 NA Intergenic Intergenic -214856 ENSMUSG00000115225.1 ENSMUSG00000115225 ENSMUST00000226887 Gm7272 processed_pseudogene Interval_167345 chr9 67616224 67618090 + 0 NA Intergenic Intergenic -83024 ENSMUSG00000111819.1 ENSMUSG00000111819 ENSMUST00000216655 Gm47110 processed_pseudogene Interval_13276 chr10 13972371 13972657 + 0 NA intron (ENSMUSG00000015501.10, intron 1 of 1) protein_coding-intron (ENSMUSG00000015501.10, intron 1 of 8) 5490 ENSMUSG00000015501.10 ENSMUSG00000015501 ENSMUST00000191464 Hivep2 protein_coding Interval_161457 chr8 120557153 120558140 + 0 NA intron (ENSMUSG00000031822.20, intron 2 of 15) protein_coding-intron (ENSMUSG00000031822.20, intron 2 of 15) -4977 ENSMUSG00000031822.20 ENSMUSG00000031822 ENSMUST00000141113 Gse1 protein_coding Interval_11311 chr1 180877626 180877925 + 0 NA Intergenic Intergenic 2897 ENSMUSG00000104251.1 ENSMUSG00000104251 ENSMUST00000195256 Gm18036 processed_pseudogene Interval_88368 chr2 4498869 4499795 + 0 NA intron (ENSMUSG00000026657.17, intron 5 of 9) protein_coding-intron (ENSMUSG00000026657.17, intron 5 of 23) -32662 ENSMUSG00000086874.1 ENSMUSG00000086874 ENSMUST00000139479 Gm13175 antisense Interval_103632 chr3 51310025 51311447 + 0 NA intron (ENSMUSG00000037174.18, intron 1 of 3) protein_coding-intron (ENSMUSG00000037174.18, intron 3 of 9) -7833 ENSMUSG00000104200.1 ENSMUSG00000104200 ENSMUST00000195224 Gm37399 TEC Interval_27774 chr11 69900477 69902256 + 0 NA promoter-TSS (ENSMUSG00000018570.17) protein_coding-promoter-TSS (ENSMUSG00000018570.17) -391 ENSMUSG00000018570.17 ENSMUSG00000018570 ENSMUST00000128046 2810408A11Rik protein_coding Interval_116296 chr4 109420560 109421961 + 0 NA intron (ENSMUSG00000028555.15, intron 1 of 4) protein_coding-intron (ENSMUSG00000028555.15, intron 2 of 17) 6484 ENSMUSG00000028555.15 ENSMUSG00000028555 ENSMUST00000139237 Ttc39a protein_coding Interval_60985 chr15 78522083 78523602 + 0 NA TTS (ENSMUSG00000022440.9) protein_coding-TTS (ENSMUSG00000022440.9) -8267 ENSMUSG00000116307.1 ENSMUSG00000116307 ENSMUST00000230340 Gm49490 antisense Interval_159871 chr8 104518072 104518658 + 0 NA promoter-TSS (ENSMUSG00000031878.18) protein_coding-promoter-TSS (ENSMUSG00000031878.18) -8455 ENSMUSG00000052616.10 ENSMUSG00000052616 ENSMUST00000162014 Terb1 protein_coding Interval_109332 chr3 139037163 139038741 + 0 NA intron (ENSMUSG00000028149.12, intron 2 of 12) protein_coding-intron (ENSMUSG00000028149.12, intron 2 of 13) 37196 ENSMUSG00000028149.12 ENSMUSG00000028149 ENSMUST00000195953 Rap1gds1 protein_coding Interval_74717 chr17 56131038 56132899 + 0 NA intron (ENSMUSG00000001227.12, intron 3 of 16) protein_coding-intron (ENSMUSG00000001227.12, intron 3 of 16) 1875 ENSMUSG00000001227.12 ENSMUSG00000001227 ENSMUST00000167545 Sema6b protein_coding Interval_132378 chr5 144596633 144597376 + 0 NA Intergenic Intergenic 51102 ENSMUSG00000059991.7 ENSMUSG00000059991 ENSMUST00000071782 Nptx2 protein_coding Interval_154125 chr8 12911635 12912544 + 0 NA TTS (ENSMUSG00000086770.1) antisense-TTS (ENSMUSG00000086770.1) 3669 ENSMUSG00000086770.1 ENSMUSG00000086770 ENSMUST00000150686 Gm15351 antisense Interval_70836 chr17 15206823 15208746 + 0 NA Intergenic Intergenic 40133 ENSMUSG00000097624.2 ENSMUSG00000097624 ENSMUST00000181658 Gm5091 lincRNA Interval_72314 chr17 29154582 29156904 + 0 NA TTS (ENSMUSG00000117291.1) transcribed_processed_pseudogene-TTS (ENSMUSG00000117291.1) 1175 ENSMUSG00000117291.1 ENSMUSG00000117291 ENSMUST00000233896 Gm18271 transcribed_processed_pseudogene Interval_113105 chr4 48278816 48280282 + 0 NA promoter-TSS (ENSMUSG00000028343.10) protein_coding-promoter-TSS (ENSMUSG00000028343.10) -97 ENSMUSG00000028343.10 ENSMUSG00000028343 ENSMUST00000148947 Erp44 protein_coding Interval_131805 chr5 139986689 139987753 + 0 NA Intergenic Intergenic -23430 ENSMUSG00000106090.1 ENSMUSG00000106090 ENSMUST00000196164 Gm43704 processed_pseudogene Interval_162526 chr9 3876752 3877345 + 0 NA intron (ENSMUSG00000041624.10, intron 7 of 7) protein_coding-intron (ENSMUSG00000041624.10, intron 7 of 7) -336874 ENSMUSG00000110691.1 ENSMUSG00000110691 ENSMUST00000211927 Gm5363 processed_pseudogene Interval_22195 chr11 7068199 7069150 + 0 NA intron (ENSMUSG00000020431.5, intron 1 of 19) protein_coding-intron (ENSMUSG00000020431.5, intron 1 of 19) -91208 ENSMUSG00000020431.5 ENSMUSG00000020431 ENSMUST00000135398 Adcy1 protein_coding Interval_15258 chr10 43870556 43871164 + 0 NA Intergenic Intergenic 24681 ENSMUSG00000019863.7 ENSMUSG00000019863 ENSMUST00000217541 Qrsl1 protein_coding Interval_6803 chr1 119634432 119635271 + 0 NA promoter-TSS (ENSMUSG00000026383.14) protein_coding-promoter-TSS (ENSMUSG00000026383.14) -3182 ENSMUSG00000102687.1 ENSMUSG00000102687 ENSMUST00000192036 Gm37219 TEC Interval_134164 chr6 22287754 22289708 + 0 NA promoter-TSS (ENSMUSG00000029671.15) protein_coding-promoter-TSS (ENSMUSG00000029671.15) -130 ENSMUSG00000029671.15 ENSMUSG00000029671 ENSMUST00000176681 Wnt16 protein_coding Interval_232 KZ289068.1 231626 232190 + 0 NA NA NA NA NA Interval_33593 chr11 117401900 117402931 + 0 NA Intergenic Intergenic -11974 ENSMUSG00000086588.1 ENSMUSG00000086588 ENSMUST00000124901 Gm11729 lincRNA Interval_115485 chr4 99326333 99326515 + 0 NA Intergenic Intergenic 30524 ENSMUSG00000070891.2 ENSMUSG00000070891 ENSMUST00000094955 Gm12689 protein_coding Interval_150370 chr7 109976824 109978050 + 0 NA intron (ENSMUSG00000047554.14, intron 4 of 4) protein_coding-intron (ENSMUSG00000047554.14, intron 5 of 6) 8850 ENSMUSG00000047554.14 ENSMUSG00000047554 ENSMUST00000207300 Tmem41b protein_coding Interval_99948 chr2 166047607 166047822 + 0 NA promoter-TSS (ENSMUSG00000027678.17) protein_coding-promoter-TSS (ENSMUSG00000027678.17) -204 ENSMUSG00000027678.17 ENSMUSG00000027678 ENSMUST00000139394 Ncoa3 protein_coding Interval_77567 chr17 91861797 91862903 + 0 NA promoter-TSS (ENSMUSG00000105064.1) miRNA-promoter-TSS (ENSMUSG00000105064.1) -252 ENSMUSG00000105064.1 ENSMUSG00000105064 ENSMUST00000199560 Gm44345 miRNA Interval_21002 chr10 123144969 123145399 + 0 NA intron (ENSMUSG00000020124.10, intron 8 of 21) protein_coding-intron (ENSMUSG00000020124.10, intron 7 of 20) 33500 ENSMUSG00000112879.1 ENSMUSG00000112879 ENSMUST00000219693 Gm47726 processed_pseudogene Interval_55158 chr14 78721850 78722413 + 0 NA intron (ENSMUSG00000034731.11, intron 2 of 29) protein_coding-intron (ENSMUSG00000034731.11, intron 1 of 28) 18321 ENSMUSG00000115107.1 ENSMUSG00000115107 ENSMUST00000228480 Gm18368 processed_pseudogene Interval_153026 chr7 140959105 140960442 + 0 NA Intergenic Intergenic -3786 ENSMUSG00000060591.9 ENSMUSG00000060591 ENSMUST00000081649 Ifitm2 protein_coding Interval_159455 chr8 94837376 94838876 + 0 NA promoter-TSS (ENSMUSG00000031782.15) protein_coding-promoter-TSS (ENSMUSG00000031782.15) 139 ENSMUSG00000031781.14 ENSMUSG00000031781 ENSMUST00000162589 Ciapin1 protein_coding Interval_40601 chr12 105956196 105956664 + 0 NA Intergenic Intergenic 56589 ENSMUSG00000113835.1 ENSMUSG00000113835 ENSMUST00000220934 Gm19554 lincRNA Interval_54939 chr14 76365369 76365632 + 0 NA Intergenic Intergenic -53328 ENSMUSG00000022010.19 ENSMUSG00000022010 ENSMUST00000133224 Tsc22d1 protein_coding Interval_132130 chr5 142873680 142873971 + 0 NA promoter-TSS (ENSMUSG00000066640.11) protein_coding-promoter-TSS (ENSMUSG00000066640.11) -941 ENSMUSG00000066640.11 ENSMUSG00000066640 ENSMUST00000156725 Fbxl18 protein_coding Interval_56381 chr14 118282753 118283244 + 0 NA Intergenic Intergenic 16038 ENSMUSG00000092109.2 ENSMUSG00000092109 ENSMUST00000171107 Gm9376 protein_coding Interval_7369 chr1 130599682 130601558 + 0 NA intron (ENSMUSG00000042554.10, intron 4 of 10) protein_coding-intron (ENSMUSG00000042554.10, intron 4 of 11) -4944 ENSMUSG00000064395.1 ENSMUSG00000064395 ENSMUST00000082461 Gm23623 snRNA Interval_7173 chr1 127458812 127459661 + 0 NA intron (ENSMUSG00000036155.13, intron 11 of 15) protein_coding-intron (ENSMUSG00000036155.13, intron 13 of 17) 52460 ENSMUSG00000103390.1 ENSMUSG00000103390 ENSMUST00000195573 Gm38301 TEC Interval_73206 chr17 35575469 35576074 + 0 NA Intergenic Intergenic 8286 ENSMUSG00000039269.5 ENSMUSG00000039269 ENSMUST00000174246 2300002M23Rik protein_coding Interval_45180 chr13 52980317 52981832 + 0 NA promoter-TSS (ENSMUSG00000056749.7) protein_coding-promoter-TSS (ENSMUSG00000056749.7) -1 ENSMUSG00000056749.7 ENSMUSG00000056749 ENSMUST00000071065 Nfil3 protein_coding Interval_137095 chr6 67308168 67309134 + 0 NA intron (ENSMUSG00000018341.12, intron 4 of 9) protein_coding-intron (ENSMUSG00000018341.12, intron 10 of 15) 31043 ENSMUSG00000018341.12 ENSMUSG00000018341 ENSMUST00000018485 Il12rb2 protein_coding Interval_12172 chr1 190483070 190483819 + 0 NA promoter-TSS (ENSMUSG00000093064.2) misc_RNA-promoter-TSS (ENSMUSG00000093064.2) -287 ENSMUSG00000093064.2 ENSMUSG00000093064 ENSMUST00000175323 Gm23153 misc_RNA Interval_141844 chr6 134876644 134877172 + 0 NA TTS (ENSMUSG00000032641.18) protein_coding-TTS (ENSMUSG00000032641.18) 10877 ENSMUSG00000032641.18 ENSMUSG00000032641 ENSMUST00000152140 Gpr19 protein_coding Interval_77482 chr17 89763895 89764135 + 0 NA Intergenic Intergenic -11489 ENSMUSG00000117511.1 ENSMUSG00000117511 ENSMUST00000234973 Gm50061 lincRNA Interval_82609 chr18 75412064 75412744 + 0 NA Intergenic Intergenic 43414 ENSMUSG00000025880.11 ENSMUSG00000025880 ENSMUST00000172718 Smad7 protein_coding Interval_150865 chr7 116024014 116024217 + 0 NA intron (ENSMUSG00000051910.13, intron 1 of 11) protein_coding-intron (ENSMUSG00000051910.13, intron 1 of 15) -7864 ENSMUSG00000030664.3 ENSMUSG00000030664 ENSMUST00000032900 Sox6os antisense Interval_11050 chr1 178917491 178918100 + 0 NA promoter-TSS (ENSMUSG00000089713.1) antisense-promoter-TSS (ENSMUSG00000089713.1) -181 ENSMUSG00000089713.1 ENSMUSG00000089713 ENSMUST00000162545 Gm16564 antisense Interval_10645 chr1 172411747 172412480 + 0 NA Intergenic Intergenic -21124 ENSMUSG00000102278.1 ENSMUSG00000102278 ENSMUST00000193540 Gm37145 TEC Interval_51631 chr14 30933392 30934121 + 0 NA intron (ENSMUSG00000006529.16, intron 13 of 21) protein_coding-intron (ENSMUSG00000006529.16, intron 13 of 21) 9530 ENSMUSG00000006529.16 ENSMUSG00000006529 ENSMUST00000227938 Itih1 protein_coding Interval_16524 chr10 63350625 63352061 + 0 NA intron (ENSMUSG00000020063.16, intron 3 of 13) protein_coding-intron (ENSMUSG00000020063.16, intron 3 of 13) -2510 ENSMUSG00000085372.1 ENSMUSG00000085372 ENSMUST00000128807 Gm16145 antisense Interval_59835 chr15 59618258 59619256 + 0 NA exon (ENSMUSG00000115896.1, exon 1 of 2) lincRNA-exon (ENSMUSG00000115896.1, exon 1 of 2) 167 ENSMUSG00000115896.1 ENSMUSG00000115896 ENSMUST00000229684 Gm36677 lincRNA Interval_150542 chr7 112183113 112183662 + 0 NA Intergenic Intergenic -24330 ENSMUSG00000030772.6 ENSMUSG00000030772 ENSMUST00000033036 Dkk3 protein_coding Interval_144381 chr7 24808339 24809755 + 0 NA Intergenic Intergenic -9748 ENSMUSG00000011350.15 ENSMUSG00000011350 ENSMUST00000155799 Gm5893 processed_transcript Interval_77175 chr17 87097387 87097902 + 0 NA Intergenic Intergenic -10047 ENSMUSG00000037104.9 ENSMUSG00000037104 ENSMUST00000234421 Socs5 protein_coding Interval_167424 chr9 69053327 69053577 + 0 NA intron (ENSMUSG00000032238.17, intron 1 of 5) protein_coding-intron (ENSMUSG00000032238.17, intron 1 of 10) 310795 ENSMUSG00000086648.1 ENSMUSG00000086648 ENSMUST00000152570 Gm15511 antisense Interval_61274 chr15 80461838 80463581 + 0 NA intron (ENSMUSG00000050439.7, intron 6 of 6) protein_coding-intron (ENSMUSG00000050439.7, intron 5 of 5) -4535 ENSMUSG00000088740.1 ENSMUSG00000088740 ENSMUST00000158115 Gm23220 snoRNA Interval_146191 chr7 44613434 44614568 + 0 NA exon (ENSMUSG00000030739.18, exon 1 of 7) protein_coding-exon (ENSMUSG00000030739.18, exon 1 of 7) -18122 ENSMUSG00000108832.1 ENSMUSG00000108832 ENSMUST00000208849 Gm44832 antisense Interval_29095 chr11 80289812 80291256 + 0 NA Intergenic Intergenic 35833 ENSMUSG00000017686.17 ENSMUSG00000017686 ENSMUST00000236882 Rhot1 protein_coding Interval_119434 chr4 137610608 137610972 + 0 NA exon (ENSMUSG00000043411.15, exon 7 of 28) protein_coding-exon (ENSMUSG00000043411.15, exon 7 of 28) -28686 ENSMUSG00000094035.3 ENSMUSG00000094035 ENSMUST00000238941 Ldlrad2 protein_coding Interval_35936 chr12 32168533 32169573 + 0 NA Intergenic Intergenic 39285 ENSMUSG00000020573.17 ENSMUSG00000020573 ENSMUST00000126814 Pik3cg protein_coding Interval_70602 chr17 12241144 12241557 + 0 NA intron (ENSMUSG00000014426.9, intron 16 of 25) protein_coding-intron (ENSMUSG00000014426.9, intron 17 of 26) -38767 ENSMUSG00000117325.1 ENSMUSG00000117325 ENSMUST00000233669 Gm49962 processed_pseudogene Interval_153688 chr8 4624373 4624665 + 0 NA intron (ENSMUSG00000058748.9, intron 1 of 3) protein_coding-intron (ENSMUSG00000058748.9, intron 1 of 3) 11352 ENSMUSG00000058748.9 ENSMUSG00000058748 ENSMUST00000073201 Zfp958 protein_coding Interval_42912 chr13 21311045 21312729 + 0 NA promoter-TSS (ENSMUSG00000004341.8) protein_coding-promoter-TSS (ENSMUSG00000004341.8) -5371 ENSMUSG00000004341.8 ENSMUSG00000004341 ENSMUST00000136668 Gpx6 protein_coding Interval_89996 chr2 27196685 27196960 + 0 NA intron (ENSMUSG00000009614.16, intron 2 of 4) protein_coding-intron (ENSMUSG00000009614.16, intron 10 of 12) 7440 ENSMUSG00000091192.1 ENSMUSG00000091192 ENSMUST00000170435 Sardhos antisense Interval_147644 chr7 70575807 70576773 + 0 NA promoter-TSS (ENSMUSG00000109021.1) lincRNA-promoter-TSS (ENSMUSG00000109021.1) -194 ENSMUSG00000109021.1 ENSMUSG00000109021 ENSMUST00000208999 Gm44812 lincRNA Interval_140311 chr6 116350613 116351165 + 0 NA promoter-TSS (ENSMUSG00000025702.15) protein_coding-promoter-TSS (ENSMUSG00000025702.15) 504 ENSMUSG00000025702.15 ENSMUSG00000025702 ENSMUST00000204918 Marchf8 protein_coding Interval_164539 chr9 38005555 38005826 + 0 NA TTS (ENSMUSG00000110513.1) unprocessed_pseudogene-TTS (ENSMUSG00000110513.1) 2619 ENSMUSG00000110513.1 ENSMUSG00000110513 ENSMUST00000211842 Olfr882-ps1 unprocessed_pseudogene Interval_153652 chr8 4290354 4290624 + 0 NA intron (ENSMUSG00000040028.10, intron 5 of 5) protein_coding-intron (ENSMUSG00000040028.10, intron 5 of 5) -14607 ENSMUSG00000002949.15 ENSMUSG00000002949 ENSMUST00000160371 Timm44 protein_coding Interval_30182 chr11 90249012 90250275 + 0 NA TTS (ENSMUSG00000110344.1) protein_coding-TTS (ENSMUSG00000110344.1) 187 ENSMUSG00000003948.17 ENSMUSG00000003948 ENSMUST00000004050 Mmd protein_coding Interval_152075 chr7 128797931 128799421 + 0 NA intron (ENSMUSG00000108600.1, intron 1 of 5) lincRNA-intron (ENSMUSG00000108600.1, intron 1 of 5) 3482 ENSMUSG00000108600.1 ENSMUSG00000108600 ENSMUST00000205528 Gm32884 lincRNA Interval_100397 chr2 168810122 168810380 + 0 NA Intergenic Intergenic 44108 ENSMUSG00000085322.2 ENSMUSG00000085322 ENSMUST00000145105 Gm14261 antisense Interval_119279 chr4 136610682 136610899 + 0 NA promoter-TSS (ENSMUSG00000083054.1) processed_pseudogene-promoter-TSS (ENSMUSG00000083054.1) 353 ENSMUSG00000036921.2 ENSMUSG00000036921 ENSMUST00000046647 Tex46 protein_coding Interval_3358 chr1 57398956 57400121 + 0 NA intron (ENSMUSG00000048495.16, intron 2 of 4) protein_coding-intron (ENSMUSG00000048495.16, intron 2 of 7) 1984 ENSMUSG00000048495.16 ENSMUSG00000048495 ENSMUST00000161780 Tyw5 protein_coding Interval_108988 chr3 134070057 134070445 + 0 NA intron (ENSMUSG00000097911.2, intron 2 of 2) antisense-intron (ENSMUSG00000097911.2, intron 2 of 2) 31814 ENSMUSG00000097911.2 ENSMUSG00000097911 ENSMUST00000180471 Gm26691 antisense Interval_65142 chr16 20140747 20142175 + 0 NA promoter-TSS (ENSMUSG00000041215.16) protein_coding-promoter-TSS (ENSMUSG00000041215.16) 35551 ENSMUSG00000084838.3 ENSMUSG00000084838 ENSMUST00000117664 Gm10241 processed_pseudogene Interval_78955 chr18 22802383 22802867 + 0 NA intron (ENSMUSG00000041923.15, intron 6 of 9) protein_coding-intron (ENSMUSG00000041923.15, intron 2 of 6) 236314 ENSMUSG00000041923.15 ENSMUSG00000041923 ENSMUST00000097652 Nol4 protein_coding Interval_171667 chr9 120032619 120032863 + 0 NA intron (ENSMUSG00000052336.7, intron 2 of 2) protein_coding-intron (ENSMUSG00000052336.7, intron 2 of 2) -12926 ENSMUSG00000079243.4 ENSMUSG00000079243 ENSMUST00000238557 Xirp1 protein_coding Interval_59401 chr15 52298112 52298536 + 0 NA intron (ENSMUSG00000022315.3, intron 1 of 7) protein_coding-intron (ENSMUSG00000022315.3, intron 1 of 7) 2771 ENSMUSG00000022315.3 ENSMUSG00000022315 ENSMUST00000037240 Slc30a8 protein_coding Interval_79034 chr18 24091976 24092799 + 0 NA Intergenic Intergenic -10463 ENSMUSG00000117500.1 ENSMUSG00000117500 ENSMUST00000234749 Gm18085 processed_pseudogene Interval_44807 chr13 48800452 48801528 + 0 NA TTS (ENSMUSG00000038025.8) protein_coding-TTS (ENSMUSG00000038025.8) -37409 ENSMUSG00000113297.1 ENSMUSG00000113297 ENSMUST00000222192 Rpl17-ps6 processed_pseudogene Interval_64736 chr16 14655670 14655966 + 0 NA Intergenic Intergenic -50034 ENSMUSG00000022676.7 ENSMUSG00000022676 ENSMUST00000023356 Snai2 protein_coding Interval_55516 chr14 89920199 89921037 + 0 NA Intergenic Intergenic -21171 ENSMUSG00000062093.5 ENSMUSG00000062093 ENSMUST00000081204 Gm10110 transcribed_processed_pseudogene Interval_97472 chr2 136921271 136921625 + 0 NA intron (ENSMUSG00000027281.16, intron 1 of 6) protein_coding-intron (ENSMUSG00000027281.16, intron 2 of 5) 15905 ENSMUSG00000027281.16 ENSMUSG00000027281 ENSMUST00000180277 Slx4ip protein_coding Interval_137615 chr6 75782572 75782935 + 0 NA promoter-TSS (ENSMUSG00000080824.1) processed_pseudogene-promoter-TSS (ENSMUSG00000080824.1) 3 ENSMUSG00000080824.1 ENSMUSG00000080824 ENSMUST00000121642 Gm9001 processed_pseudogene Interval_174709 chrX 163908328 163909708 + 0 NA promoter-TSS (ENSMUSG00000031367.15) protein_coding-promoter-TSS (ENSMUSG00000031367.15) -2383 ENSMUSG00000031367.15 ENSMUSG00000031367 ENSMUST00000140845 Ap1s2 protein_coding Interval_150503 chr7 111282058 111282614 + 0 NA Intergenic Intergenic -83962 ENSMUSG00000109808.1 ENSMUSG00000109808 ENSMUST00000211799 5430402P08Rik lincRNA Interval_139761 chr6 108456216 108458952 + 0 NA intron (ENSMUSG00000030102.11, intron 4 of 5) protein_coding-intron (ENSMUSG00000030102.11, intron 44 of 61) 1401 ENSMUSG00000098674.1 ENSMUSG00000098674 ENSMUST00000184343 Gm27813 misc_RNA Interval_115878 chr4 105550798 105551656 + 0 NA Intergenic Intergenic -27113 ENSMUSG00000082061.1 ENSMUSG00000082061 ENSMUST00000121621 Gm12726 processed_pseudogene Interval_174755 chrX 165479939 165480306 + 0 NA Intergenic Intergenic -152729 ENSMUSG00000018589.8 ENSMUSG00000018589 ENSMUST00000058787 Glra2 protein_coding Interval_105123 chr3 81932395 81933233 + 0 NA exon (ENSMUSG00000028015.3, exon 1 of 1) protein_coding-exon (ENSMUSG00000028015.3, exon 1 of 1) 191 ENSMUSG00000028015.3 ENSMUSG00000028015 ENSMUST00000155144 Ctso protein_coding Interval_6081 chr1 96333914 96334441 + 0 NA Intergenic Intergenic 20935 ENSMUSG00000102658.1 ENSMUSG00000102658 ENSMUST00000192033 Gm37076 TEC Interval_23218 chr11 20612989 20613522 + 0 NA intron (ENSMUSG00000049800.13, intron 1 of 1) protein_coding-intron (ENSMUSG00000049800.13, intron 1 of 1) -38066 ENSMUSG00000083555.1 ENSMUSG00000083555 ENSMUST00000121890 Gm12035 processed_pseudogene Interval_133663 chr6 8228857 8229748 + 0 NA promoter-TSS (ENSMUSG00000042447.13) protein_coding-promoter-TSS (ENSMUSG00000042447.13) -203 ENSMUSG00000042447.13 ENSMUSG00000042447 ENSMUST00000161134 Mios protein_coding Interval_89841 chr2 25909964 25910210 + 0 NA promoter-TSS (ENSMUSG00000058740.14) protein_coding-promoter-TSS (ENSMUSG00000058740.14) 46119 ENSMUSG00000058740.14 ENSMUSG00000058740 ENSMUST00000199269 Kcnt1 protein_coding Interval_132317 chr5 144136269 144138186 + 0 NA intron (ENSMUSG00000038970.7, intron 3 of 13) protein_coding-intron (ENSMUSG00000038970.7, intron 3 of 13) -25455 ENSMUSG00000098039.1 ENSMUSG00000098039 ENSMUST00000182470 Gm26925 processed_pseudogene Interval_136655 chr6 57225895 57226253 + 0 NA Intergenic Intergenic -5612 ENSMUSG00000114982.1 ENSMUSG00000114982 ENSMUST00000177435 Vmn1r14 protein_coding Interval_30191 chr11 90370757 90371715 + 0 NA intron (ENSMUSG00000003949.16, intron 2 of 4) protein_coding-intron (ENSMUSG00000003949.16, intron 2 of 3) 16737 ENSMUSG00000003949.16 ENSMUSG00000003949 ENSMUST00000145786 Hlf protein_coding Interval_37026 chr12 56543987 56544444 + 0 NA intron (ENSMUSG00000098172.7, intron 2 of 2) antisense-intron (ENSMUSG00000098172.7, intron 2 of 2) 6850 ENSMUSG00000098172.7 ENSMUSG00000098172 ENSMUST00000182105 Gm26973 antisense Interval_83305 chr18 84027886 84029648 + 0 NA intron (ENSMUSG00000046982.11, intron 1 of 1) protein_coding-intron (ENSMUSG00000046982.11, intron 1 of 1) 40772 ENSMUSG00000117894.1 ENSMUSG00000117894 ENSMUST00000238017 Gm50421 processed_pseudogene Interval_117476 chr4 123998553 123999951 + 0 NA Intergenic Intergenic 73018 ENSMUSG00000082515.1 ENSMUSG00000082515 ENSMUST00000118389 Gm12902 processed_pseudogene Interval_29357 chr11 83420484 83421726 + 0 NA TTS (ENSMUSG00000020686.12) protein_coding-TTS (ENSMUSG00000020686.12) 8350 ENSMUSG00000020686.12 ENSMUSG00000020686 ENSMUST00000147301 Gas2l2 protein_coding Interval_118080 chr4 128839656 128841454 + 0 NA Intergenic Intergenic -5642 ENSMUSG00000085701.1 ENSMUSG00000085701 ENSMUST00000138291 Gm12968 lincRNA Interval_4795 chr1 78799856 78801424 + 0 NA intron (ENSMUSG00000099706.1, intron 3 of 3) lincRNA-intron (ENSMUSG00000099706.1, intron 3 of 3) -15781 ENSMUSG00000099377.1 ENSMUSG00000099377 ENSMUST00000191249 Gm6159 processed_pseudogene Interval_160063 chr8 106127046 106127596 + 0 NA intron (ENSMUSG00000031902.10, intron 10 of 10) protein_coding-intron (ENSMUSG00000031902.10, intron 9 of 9) 9364 ENSMUSG00000084128.10 ENSMUSG00000084128 ENSMUST00000155164 Esrp2 protein_coding Interval_35630 chr12 26311481 26311775 + 0 NA intron (ENSMUSG00000020642.13, intron 8 of 8) protein_coding-intron (ENSMUSG00000020642.13, intron 9 of 9) -1350 ENSMUSG00000020642.13 ENSMUSG00000020642 ENSMUST00000221994 Rnf144a protein_coding Interval_170114 chr9 104854402 104854707 + 0 NA intron (ENSMUSG00000032564.16, intron 2 of 8) protein_coding-intron (ENSMUSG00000032564.16, intron 2 of 15) -18125 ENSMUSG00000032564.16 ENSMUSG00000032564 ENSMUST00000213452 Cpne4 protein_coding Interval_98464 chr2 152603350 152604668 + 0 NA promoter-TSS (ENSMUSG00000044863.7) protein_coding-promoter-TSS (ENSMUSG00000044863.7) -318 ENSMUSG00000044863.7 ENSMUSG00000044863 ENSMUST00000058086 Defb36 protein_coding Interval_41722 chr12 118309454 118310201 + 0 NA Intergenic Intergenic -8459 ENSMUSG00000025323.10 ENSMUSG00000025323 ENSMUST00000221844 Sp4 protein_coding Interval_100813 chr2 172668489 172668955 + 0 NA Intergenic Intergenic 117731 ENSMUSG00000028640.11 ENSMUSG00000028640 ENSMUST00000142633 Tfap2c protein_coding Interval_46999 chr13 74144177 74144570 + 0 NA intron (ENSMUSG00000036123.8, intron 1 of 15) protein_coding-intron (ENSMUSG00000036123.8, intron 1 of 15) 22858 ENSMUSG00000036123.8 ENSMUSG00000036123 ENSMUST00000221703 Slc9a3 protein_coding Interval_85785 chr19 31104979 31107466 + 0 NA intron (ENSMUSG00000052920.16, intron 3 of 17) protein_coding-intron (ENSMUSG00000052920.16, intron 3 of 17) -6324 ENSMUSG00000118011.1 ENSMUSG00000118011 ENSMUST00000235353 Gm50266 processed_pseudogene Interval_57284 chr15 8420497 8421496 + 0 NA intron (ENSMUSG00000022141.7, intron 1 of 46) protein_coding-intron (ENSMUSG00000022141.7, intron 1 of 46) 23467 ENSMUSG00000022141.7 ENSMUSG00000022141 ENSMUST00000052965 Nipbl protein_coding Interval_29763 chr11 86638170 86638444 + 0 NA intron (ENSMUSG00000018171.9, intron 6 of 11) protein_coding-intron (ENSMUSG00000018171.9, intron 6 of 11) -7281 ENSMUSG00000083992.1 ENSMUSG00000083992 ENSMUST00000117851 Gm11478 processed_pseudogene Interval_74491 chr17 51854066 51854300 + 0 NA Intergenic Intergenic 3944 ENSMUSG00000102600.1 ENSMUSG00000102600 ENSMUST00000193802 Gm37266 TEC Interval_42008 chr13 6469246 6469872 + 0 NA Intergenic Intergenic -61036 ENSMUSG00000114195.1 ENSMUSG00000114195 ENSMUST00000221776 2900042G08Rik TEC Interval_133009 chr5 149261605 149262378 + 0 NA Intergenic Intergenic -13747 ENSMUSG00000092674.2 ENSMUSG00000092674 ENSMUST00000174933 Gm24105 misc_RNA Interval_135643 chr6 42280511 42280800 + 0 NA TTS (ENSMUSG00000029863.13) protein_coding-TTS (ENSMUSG00000029863.13) 848 ENSMUSG00000029863.13 ENSMUSG00000029863 ENSMUST00000203089 Casp2 protein_coding Interval_16144 chr10 61006127 61006429 + 0 NA Intergenic Intergenic -25025 ENSMUSG00000093568.1 ENSMUSG00000093568 ENSMUST00000177492 Gm20611 lincRNA Interval_111483 chr4 22028431 22028680 + 0 NA Intergenic Intergenic -20366 ENSMUSG00000080997.1 ENSMUSG00000080997 ENSMUST00000118473 Gm11885 processed_pseudogene Interval_2502 chr1 39810210 39810973 + 0 NA Intergenic Intergenic -5259 ENSMUSG00000091937.3 ENSMUSG00000091937 ENSMUST00000171319 Gm3646 protein_coding Interval_105994 chr3 90501611 90501827 + 0 NA TTS (ENSMUSG00000001017.15) protein_coding-TTS (ENSMUSG00000001017.15) 7757 ENSMUSG00000001017.15 ENSMUSG00000001017 ENSMUST00000131868 Chtop protein_coding Interval_114068 chr4 62965220 62966082 + 0 NA promoter-TSS (ENSMUSG00000028358.15) protein_coding-promoter-TSS (ENSMUSG00000028358.15) 25739 ENSMUSG00000083635.1 ENSMUSG00000083635 ENSMUST00000120214 Gm11480 processed_pseudogene Interval_163929 chr9 29000592 29001131 + 0 NA intron (ENSMUSG00000059974.10, intron 3 of 4) protein_coding-intron (ENSMUSG00000059974.10, intron 7 of 7) 13398 ENSMUSG00000059974.10 ENSMUSG00000059974 ENSMUST00000151977 Ntm protein_coding Interval_90760 chr2 32352131 32353637 + 0 NA intron (ENSMUSG00000039205.16, intron 1 of 16) protein_coding-intron (ENSMUSG00000026825.17, intron 1 of 22) 418 ENSMUSG00000026825.17 ENSMUSG00000026825 ENSMUST00000139238 Dnm1 protein_coding Interval_157302 chr8 69144111 69144595 + 0 NA intron (ENSMUSG00000036306.13, intron 1 of 3) protein_coding-intron (ENSMUSG00000036306.13, intron 1 of 3) 37877 ENSMUSG00000036306.13 ENSMUSG00000036306 ENSMUST00000184961 Lzts1 protein_coding Interval_70432 chr17 10196229 10196603 + 0 NA Intergenic Intergenic 122945 ENSMUSG00000062078.15 ENSMUSG00000062078 ENSMUST00000233684 Qk protein_coding Interval_171442 chr9 118389355 118390506 + 0 NA Intergenic Intergenic 13372 ENSMUSG00000103968.1 ENSMUSG00000103968 ENSMUST00000193035 2610509F24Rik TEC Interval_114809 chr4 85506794 85507765 + 0 NA intron (ENSMUSG00000028488.15, intron 7 of 7) protein_coding-intron (ENSMUSG00000028488.15, intron 7 of 7) -6893 ENSMUSG00000066113.16 ENSMUSG00000066113 ENSMUST00000107177 Adamtsl1 protein_coding Interval_20670 chr10 120141610 120141807 + 0 NA TTS (ENSMUSG00000020227.10) protein_coding-TTS (ENSMUSG00000020227.10) -26941 ENSMUSG00000112894.1 ENSMUSG00000112894 ENSMUST00000220425 Gm47009 antisense Interval_60398 chr15 73492847 73493353 + 0 NA Intergenic Intergenic 4197 ENSMUSG00000115885.1 ENSMUSG00000115885 ENSMUST00000230637 Gm19811 processed_pseudogene Interval_48360 chr13 98504180 98505338 + 0 NA Intergenic Intergenic -12758 ENSMUSG00000092116.1 ENSMUSG00000092116 ENSMUST00000170205 Gm10320 protein_coding Interval_15242 chr10 43684230 43684877 + 0 NA intron (ENSMUSG00000111749.1, intron 3 of 3) lincRNA-intron (ENSMUSG00000075184.3, intron 3 of 4) 2749 ENSMUSG00000111749.1 ENSMUSG00000111749 ENSMUST00000217559 Gm47927 lincRNA Interval_124864 chr5 57566513 57566909 + 0 NA Intergenic Intergenic -41858 ENSMUSG00000051116.6 ENSMUSG00000051116 ENSMUST00000153583 Gm8121 processed_pseudogene Interval_77687 chr17 94289868 94290931 + 0 NA Intergenic Intergenic 38464 ENSMUSG00000077433.1 ENSMUSG00000077433 ENSMUST00000104245 Gm22593 snRNA Interval_11589 chr1 183047964 183048206 + 0 NA Intergenic Intergenic -26521 ENSMUSG00000094807.2 ENSMUSG00000094807 ENSMUST00000178492 Gm24975 miRNA Interval_35658 chr12 26921441 26921903 + 0 NA Intergenic Intergenic -86799 ENSMUSG00000113218.1 ENSMUSG00000113218 ENSMUST00000222026 4933409F18Rik lincRNA Interval_167618 chr9 71180160 71180579 + 0 NA intron (ENSMUSG00000111429.1, intron 5 of 5) antisense-intron (ENSMUSG00000111429.1, intron 2 of 2) 11593 ENSMUSG00000111429.1 ENSMUSG00000111429 ENSMUST00000217021 Gm32511 antisense Interval_140103 chr6 114237564 114237939 + 0 NA intron (ENSMUSG00000030307.8, intron 9 of 13) protein_coding-intron (ENSMUSG00000030307.8, intron 9 of 13) -45039 ENSMUSG00000030310.10 ENSMUSG00000030310 ENSMUST00000204540 Slc6a1 protein_coding Interval_151488 chr7 123037236 123037431 + 0 NA intron (ENSMUSG00000109814.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000109814.1, intron 1 of 3) 5918 ENSMUSG00000109814.1 ENSMUSG00000109814 ENSMUST00000209402 Gm45847 lincRNA Interval_63843 chr16 3943387 3943573 + 0 NA Intergenic Intergenic -14123 ENSMUSG00000085048.1 ENSMUSG00000085048 ENSMUST00000126677 Gm15537 antisense Interval_113639 chr4 57195846 57196576 + 0 NA intron (ENSMUSG00000038764.14, intron 24 of 25) protein_coding-intron (ENSMUSG00000038764.14, intron 24 of 25) 24140 ENSMUSG00000085967.1 ENSMUSG00000085967 ENSMUST00000152074 Gm12530 antisense Interval_72304 chr17 29065111 29066097 + 0 NA intron (ENSMUSG00000085912.2, intron 1 of 1) lincRNA-intron (ENSMUSG00000085912.2, intron 1 of 1) 5860 ENSMUSG00000098994.1 ENSMUSG00000098994 ENSMUST00000183758 Gm27599 misc_RNA Interval_147648 chr7 70604855 70605125 + 0 NA Intergenic Intergenic 12100 ENSMUSG00000109018.1 ENSMUSG00000109018 ENSMUST00000208305 Gm44809 TEC Interval_46951 chr13 73692395 73693081 + 0 NA promoter-TSS (ENSMUSG00000021565.16) protein_coding-promoter-TSS (ENSMUSG00000021565.16) -484 ENSMUSG00000021565.16 ENSMUSG00000021565 ENSMUST00000140878 Slc6a19 protein_coding Interval_35909 chr12 31848591 31849855 + 0 NA intron (ENSMUSG00000111987.1, intron 1 of 1) protein_coding-intron (ENSMUSG00000035933.5, intron 14 of 22) 403 ENSMUSG00000111987.1 ENSMUSG00000111987 ENSMUST00000220137 Gm48809 antisense Interval_100445 chr2 169048296 169048932 + 0 NA Intergenic Intergenic -12506 ENSMUSG00000080415.1 ENSMUSG00000080415 ENSMUST00000116765 Gm26469 miRNA Interval_12571 chr10 3396935 3397198 + 0 NA intron (ENSMUSG00000040653.6, intron 1 of 1) protein_coding-intron (ENSMUSG00000040653.6, intron 1 of 3) -27957 ENSMUSG00000080655.1 ENSMUSG00000080655 ENSMUST00000117005 Gm24482 miRNA Interval_88718 chr2 9965522 9965914 + 0 NA intron (ENSMUSG00000025782.12, intron 2 of 6) protein_coding-intron (ENSMUSG00000025782.12, intron 2 of 6) -23967 ENSMUSG00000025782.12 ENSMUSG00000025782 ENSMUST00000114907 Taf3 protein_coding Interval_18657 chr10 88843532 88843991 + 0 NA Intergenic Intergenic -16978 ENSMUSG00000004356.8 ENSMUSG00000004356 ENSMUST00000220439 Utp20 protein_coding Interval_2469 chr1 39576388 39577958 + 0 NA exon (ENSMUSG00000048234.13, exon 1 of 7) protein_coding-exon (ENSMUSG00000048234.13, exon 1 of 7) 130 ENSMUSG00000048234.13 ENSMUSG00000048234 ENSMUST00000195705 Rnf149 protein_coding Interval_17324 chr10 75880082 75880563 + 0 NA Intergenic Intergenic 4891 ENSMUSG00000112306.1 ENSMUSG00000112306 ENSMUST00000220036 Gm47744 processed_pseudogene Interval_81075 chr18 53665780 53666590 + 0 NA intron (ENSMUSG00000118362.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000118362.1, intron 1 of 2) 27079 ENSMUSG00000118362.1 ENSMUSG00000118362 ENSMUST00000235670 Gm19466 lincRNA Interval_132446 chr5 144963852 144966356 + 0 NA intron (ENSMUSG00000038780.14, intron 1 of 18) protein_coding-intron (ENSMUSG00000038780.14, intron 1 of 17) -55074 ENSMUSG00000105177.1 ENSMUSG00000105177 ENSMUST00000196761 Gm43563 unprocessed_pseudogene Interval_119321 chr4 136861922 136862877 + 0 NA Intergenic Intergenic 23788 ENSMUSG00000036905.8 ENSMUSG00000036905 ENSMUST00000046384 C1qb protein_coding Interval_107488 chr3 108056635 108057053 + 0 NA Intergenic Intergenic -11985 ENSMUSG00000027890.17 ENSMUSG00000027890 ENSMUST00000106670 Gstm4 protein_coding Interval_2707 chr1 43645378 43645650 + 0 NA Intergenic Intergenic -85088 ENSMUSG00000026051.8 ENSMUSG00000026051 ENSMUST00000027217 Ecrg4 protein_coding Interval_64983 chr16 17677689 17678240 + 0 NA TTS (ENSMUSG00000012114.17) protein_coding-TTS (ENSMUSG00000012114.17) -24963 ENSMUSG00000116561.1 ENSMUSG00000116561 ENSMUST00000231388 Gm18335 processed_pseudogene Interval_92085 chr2 53108348 53109641 + 0 NA intron (ENSMUSG00000036053.17, intron 15 of 26) protein_coding-intron (ENSMUSG00000036053.17, intron 15 of 26) 82193 ENSMUSG00000061136.16 ENSMUSG00000061136 ENSMUST00000132031 Prpf40a protein_coding Interval_56088 chr14 105532689 105533060 + 0 NA Intergenic Intergenic 14778 ENSMUSG00000115386.1 ENSMUSG00000115386 ENSMUST00000226350 Gm35909 lincRNA Interval_67696 chr16 56012425 56015350 + 0 NA intron (ENSMUSG00000071533.11, intron 4 of 4) protein_coding-intron (ENSMUSG00000071533.11, intron 4 of 4) 8695 ENSMUSG00000022601.11 ENSMUSG00000022601 ENSMUST00000184618 Zbtb11 protein_coding Interval_170983 chr9 113486089 113487100 + 0 NA Intergenic Intergenic 21761 ENSMUSG00000109890.2 ENSMUSG00000109890 ENSMUST00000209716 AU023762 lincRNA Interval_70957 chr17 16799278 16799628 + 0 NA Intergenic Intergenic 17832 ENSMUSG00000116804.1 ENSMUSG00000116804 ENSMUST00000231738 Gm5223 processed_pseudogene Interval_9117 chr1 153737546 153737967 + 0 NA promoter-TSS (ENSMUSG00000100334.1) lincRNA-promoter-TSS (ENSMUSG00000100334.1) 73 ENSMUSG00000100334.1 ENSMUSG00000100334 ENSMUST00000190663 C230024C17Rik lincRNA Interval_88518 chr2 5789605 5790383 + 0 NA Intergenic Intergenic 33125 ENSMUSG00000039128.13 ENSMUSG00000039128 ENSMUST00000150876 Cdc123 protein_coding Interval_136563 chr6 55705267 55705842 + 0 NA Intergenic Intergenic 20983 ENSMUSG00000108063.1 ENSMUSG00000108063 ENSMUST00000203099 Gm3279 lincRNA Interval_151660 chr7 125773060 125773383 + 0 NA intron (ENSMUSG00000032743.15, intron 5 of 26) protein_coding-intron (ENSMUSG00000032743.15, intron 6 of 27) 65304 ENSMUSG00000032743.15 ENSMUSG00000032743 ENSMUST00000155059 D430042O09Rik protein_coding Interval_173004 chrX 61568999 61569556 + 0 NA Intergenic Intergenic 49923 ENSMUSG00000080910.1 ENSMUSG00000080910 ENSMUST00000121975 Gm14821 processed_pseudogene Interval_149491 chr7 99078461 99079727 + 0 NA intron (ENSMUSG00000035354.9, intron 6 of 11) protein_coding-intron (ENSMUSG00000035354.9, intron 5 of 14) -11138 ENSMUSG00000109492.1 ENSMUSG00000109492 ENSMUST00000208990 Gm33882 processed_pseudogene Interval_66784 chr16 37596953 37597161 + 0 NA promoter-TSS (ENSMUSG00000116723.1) antisense-promoter-TSS (ENSMUSG00000116723.1) -867 ENSMUSG00000116723.1 ENSMUSG00000116723 ENSMUST00000231668 Gm46559 antisense Interval_96751 chr2 127755357 127755564 + 0 NA intron (ENSMUSG00000027378.16, intron 15 of 19) protein_coding-intron (ENSMUSG00000027378.16, intron 15 of 19) -1390 ENSMUSG00000027378.16 ENSMUSG00000027378 ENSMUST00000148033 Nphp1 protein_coding Interval_135639 chr6 42227406 42227685 + 0 NA Intergenic Intergenic 12217 ENSMUSG00000051917.3 ENSMUSG00000051917 ENSMUST00000063489 Tas2r144 protein_coding Interval_169998 chr9 103502828 103505153 + 0 NA intron (ENSMUSG00000042757.16, intron 3 of 5) protein_coding-intron (ENSMUSG00000042757.16, intron 2 of 4) 14664 ENSMUSG00000085168.2 ENSMUSG00000085168 ENSMUST00000215604 Gm16252 antisense Interval_100976 chr2 173770598 173771963 + 0 NA intron (ENSMUSG00000054455.5, intron 1 of 4) protein_coding-intron (ENSMUSG00000054455.5, intron 2 of 5) 3080 ENSMUSG00000054455.5 ENSMUSG00000054455 ENSMUST00000154306 Vapb protein_coding Interval_143494 chr7 10480675 10481082 + 0 NA Intergenic Intergenic -11185 ENSMUSG00000118408.1 ENSMUSG00000118408 ENSMUST00000238284 Gm30645 processed_pseudogene Interval_80211 chr18 38286168 38286822 + 0 NA intron (ENSMUSG00000060450.14, intron 1 of 4) protein_coding-intron (ENSMUSG00000060450.14, intron 1 of 4) -8536 ENSMUSG00000024440.13 ENSMUSG00000024440 ENSMUST00000193123 Pcdh12 protein_coding Interval_129613 chr5 121329855 121332069 + 0 NA intron (ENSMUSG00000042744.16, intron 49 of 75) protein_coding-intron (ENSMUSG00000042744.16, intron 49 of 75) -25882 ENSMUSG00000077347.1 ENSMUSG00000077347 ENSMUST00000104159 Gm24671 snRNA Interval_100789 chr2 172529570 172529887 + 0 NA Intergenic Intergenic -20037 ENSMUSG00000081344.5 ENSMUSG00000081344 ENSMUST00000121320 Gm14303 processed_pseudogene Interval_37395 chr12 66386322 66386998 + 0 NA Intergenic Intergenic -18275 ENSMUSG00000114093.1 ENSMUSG00000114093 ENSMUST00000221562 Gm47979 lincRNA Interval_70467 chr17 10405759 10406571 + 0 NA intron (ENSMUSG00000037196.6, intron 4 of 4) protein_coding-intron (ENSMUSG00000037196.6, intron 4 of 4) -50051 ENSMUSG00000089633.2 ENSMUSG00000089633 ENSMUST00000160738 A230009B12Rik antisense Interval_150124 chr7 107066257 107066446 + 0 NA Intergenic Intergenic -2415 ENSMUSG00000108862.1 ENSMUSG00000108862 ENSMUST00000208139 Gm17991 processed_pseudogene Interval_40696 chr12 107515807 107516671 + 0 NA Intergenic Intergenic 27607 ENSMUSG00000060375.2 ENSMUSG00000060375 ENSMUST00000082269 3110018I06Rik lincRNA Interval_147637 chr7 70408872 70409906 + 0 NA exon (ENSMUSG00000100005.7, exon 9 of 10) processed_transcript-exon (ENSMUSG00000100005.7, exon 9 of 10) -20979 ENSMUSG00000101559.1 ENSMUSG00000101559 ENSMUST00000189033 Gm28258 lincRNA Interval_72232 chr17 28713863 28714403 + 0 NA intron (ENSMUSG00000053436.15, intron 3 of 12) protein_coding-intron (ENSMUSG00000053436.15, intron 2 of 11) -11950 ENSMUSG00000117145.1 ENSMUSG00000117145 ENSMUST00000233003 Gm4356 protein_coding Interval_89777 chr2 25379749 25381399 + 0 NA Intergenic Intergenic 8214 ENSMUSG00000026955.13 ENSMUSG00000026955 ENSMUST00000129214 Sapcd2 protein_coding Interval_65016 chr16 17890908 17892112 + 0 NA promoter-TSS (ENSMUSG00000003166.20) protein_coding-promoter-TSS (ENSMUSG00000003166.20) 161 ENSMUSG00000092470.1 ENSMUSG00000092470 ENSMUST00000150068 Gm20518 protein_coding Interval_33613 chr11 117509610 117510216 + 0 NA Intergenic Intergenic -13690 ENSMUSG00000085419.1 ENSMUSG00000085419 ENSMUST00000132261 Gm11734 lincRNA Interval_104542 chr3 67558920 67559154 + 0 NA Intergenic Intergenic -5612 ENSMUSG00000103718.1 ENSMUSG00000103718 ENSMUST00000195865 Gm35299 lincRNA Interval_56409 chr14 118569749 118570104 + 0 NA intron (ENSMUSG00000032849.14, intron 18 of 29) protein_coding-intron (ENSMUSG00000032849.14, intron 19 of 30) 5854 ENSMUSG00000115075.1 ENSMUSG00000115075 ENSMUST00000227627 Gm49033 processed_pseudogene Interval_58358 chr15 33492844 33493710 + 0 NA intron (ENSMUSG00000039007.10, intron 7 of 8) protein_coding-intron (ENSMUSG00000039007.10, intron 6 of 7) -87301 ENSMUSG00000058101.3 ENSMUSG00000058101 ENSMUST00000079057 1700084J12Rik transcribed_processed_pseudogene Interval_146754 chr7 49942361 49942592 + 0 NA intron (ENSMUSG00000039728.15, intron 9 of 14) protein_coding-intron (ENSMUSG00000039728.15, intron 10 of 15) 32177 ENSMUSG00000039728.15 ENSMUSG00000039728 ENSMUST00000107605 Slc6a5 protein_coding Interval_33022 chr11 113722528 113723259 + 0 NA Intergenic Intergenic -13373 ENSMUSG00000018727.19 ENSMUSG00000018727 ENSMUST00000151396 Cpsf4l protein_coding Interval_101386 chr2 180963901 180964409 + 0 NA intron (ENSMUSG00000087293.1, intron 2 of 2) antisense-intron (ENSMUSG00000087293.1, intron 2 of 2) -6885 ENSMUSG00000027575.19 ENSMUSG00000027575 ENSMUST00000148908 Arfgap1 protein_coding Interval_149845 chr7 101959521 101959707 + 0 NA intron (ENSMUSG00000066306.13, intron 1 of 13) protein_coding-intron (ENSMUSG00000066306.13, intron 1 of 13) -2329 ENSMUSG00000109872.1 ENSMUSG00000109872 ENSMUST00000210566 Gm45312 processed_pseudogene Interval_57826 chr15 22194294 22195175 + 0 NA Intergenic Intergenic -79336 ENSMUSG00000098700.1 ENSMUSG00000098700 ENSMUST00000184465 Gm27525 miRNA Interval_124265 chr5 43152415 43153131 + 0 NA intron (ENSMUSG00000085720.8, intron 5 of 5) antisense-intron (ENSMUSG00000085720.8, intron 7 of 7) -4446 ENSMUSG00000105087.1 ENSMUSG00000105087 ENSMUST00000196754 Gm42552 TEC Interval_113833 chr4 59207466 59207898 + 0 NA intron (ENSMUSG00000028381.8, intron 1 of 2) protein_coding-intron (ENSMUSG00000028381.8, intron 1 of 8) -4974 ENSMUSG00000028381.8 ENSMUSG00000028381 ENSMUST00000155153 Ugcg protein_coding Interval_43714 chr13 35739476 35742230 + 0 NA promoter-TSS (ENSMUSG00000059288.14) protein_coding-promoter-TSS (ENSMUSG00000059288.14) -21959 ENSMUSG00000059288.14 ENSMUSG00000059288 ENSMUST00000226071 Cdyl protein_coding Interval_31684 chr11 102241650 102242112 + 0 NA Intergenic Intergenic -11731 ENSMUSG00000098863.1 ENSMUSG00000098863 ENSMUST00000183986 Mir8101 miRNA Interval_167857 chr9 73106560 73107127 + 0 NA intron (ENSMUSG00000092310.2, intron 4 of 6) protein_coding-intron (ENSMUSG00000092310.2, intron 4 of 6) 4373 ENSMUSG00000092310.2 ENSMUSG00000092310 ENSMUST00000174203 Gm20509 protein_coding Interval_158413 chr8 83588389 83588604 + 0 NA intron (ENSMUSG00000031708.17, intron 1 of 5) protein_coding-intron (ENSMUSG00000031708.17, intron 1 of 12) -2971 ENSMUSG00000110471.1 ENSMUSG00000110471 ENSMUST00000212714 Gm45823 sense_intronic Interval_70909 chr17 15804049 15805009 + 0 NA TTS (ENSMUSG00000048027.9) protein_coding-TTS (ENSMUSG00000048027.9) 26356 ENSMUSG00000048027.9 ENSMUSG00000048027 ENSMUST00000231985 Rgmb protein_coding Interval_140927 chr6 122792099 122793264 + 0 NA TTS (ENSMUSG00000107066.2) processed_pseudogene-TTS (ENSMUSG00000107066.2) 644 ENSMUSG00000107066.2 ENSMUSG00000107066 ENSMUST00000200876 Gm4482 processed_pseudogene Interval_60363 chr15 73170274 73171488 + 0 NA intron (ENSMUSG00000036698.11, intron 1 of 18) protein_coding-intron (ENSMUSG00000036698.11, intron 1 of 18) 6966 ENSMUSG00000036698.11 ENSMUSG00000036698 ENSMUST00000230464 Ago2 protein_coding Interval_20273 chr10 116568252 116568688 + 0 NA TTS (ENSMUSG00000112881.1) TEC-TTS (ENSMUSG00000112881.1) 1688 ENSMUSG00000112881.1 ENSMUSG00000112881 ENSMUST00000220056 Gm49344 TEC Interval_172459 chrX 20728851 20729075 + 0 NA Intergenic Intergenic 17138 ENSMUSG00000031066.10 ENSMUSG00000031066 ENSMUST00000149960 Usp11 protein_coding Interval_18455 chr10 86182320 86182525 + 0 NA intron (ENSMUSG00000059602.14, intron 6 of 8) protein_coding-intron (ENSMUSG00000059602.14, intron 6 of 13) 56595 ENSMUSG00000087256.1 ENSMUSG00000087256 ENSMUST00000132223 Gm15990 antisense Interval_37989 chr12 73631288 73631598 + 0 NA intron (ENSMUSG00000021108.18, intron 2 of 14) protein_coding-intron (ENSMUSG00000021108.18, intron 1 of 13) 46647 ENSMUSG00000021108.18 ENSMUSG00000021108 ENSMUST00000220898 Prkch protein_coding Interval_153791 chr8 8640118 8640437 + 0 NA promoter-TSS (ENSMUSG00000001300.16) protein_coding-promoter-TSS (ENSMUSG00000001300.16) -1072 ENSMUSG00000109568.1 ENSMUSG00000109568 ENSMUST00000209091 Gm45074 TEC Interval_12799 chr10 5563614 5564685 + 0 NA Intergenic Intergenic -29626 ENSMUSG00000046916.9 ENSMUSG00000046916 ENSMUST00000051809 Myct1 protein_coding Interval_159532 chr8 95293123 95294251 + 0 NA promoter-TSS (ENSMUSG00000031789.17) protein_coding-promoter-TSS (ENSMUSG00000031789.17) 6979 ENSMUSG00000031789.17 ENSMUSG00000031789 ENSMUST00000212237 Cngb1 protein_coding Interval_23546 chr11 23288540 23288937 + 0 NA intron (ENSMUSG00000020290.14, intron 20 of 25) protein_coding-intron (ENSMUSG00000020290.14, intron 20 of 25) 4094 ENSMUSG00000020290.14 ENSMUSG00000020290 ENSMUST00000150750 Xpo1 protein_coding Interval_104358 chr3 64020098 64020268 + 0 NA exon (ENSMUSG00000027823.9, exon 16 of 16) protein_coding-exon (ENSMUSG00000027823.9, exon 16 of 16) 35427 ENSMUSG00000090303.3 ENSMUSG00000090303 ENSMUST00000176077 Vmn2r-ps3 unprocessed_pseudogene Interval_32787 chr11 110604447 110605206 + 0 NA Intergenic Intergenic 60319 ENSMUSG00000085985.1 ENSMUSG00000085985 ENSMUST00000144689 Gm11682 lincRNA Interval_89206 chr2 18046525 18048399 + 0 NA TTS (ENSMUSG00000054074.9) protein_coding-TTS (ENSMUSG00000054074.9) -2890 ENSMUSG00000054074.9 ENSMUSG00000054074 ENSMUST00000152908 Skida1 protein_coding Interval_106777 chr3 100713500 100714107 + 0 NA Intergenic Intergenic 21097 ENSMUSG00000106227.1 ENSMUSG00000106227 ENSMUST00000198003 Gm43464 lincRNA Interval_92603 chr2 61255951 61256178 + 0 NA Intergenic Intergenic -24214 ENSMUSG00000077464.1 ENSMUSG00000077464 ENSMUST00000104276 Gm26422 snoRNA Interval_56160 chr14 108910746 108912128 + 0 NA exon (ENSMUSG00000075478.3, exon 1 of 1) protein_coding-exon (ENSMUSG00000075478.3, exon 1 of 1) 2721 ENSMUSG00000075478.3 ENSMUSG00000075478 ENSMUST00000100322 Slitrk1 protein_coding Interval_9806 chr1 162548053 162549027 + 0 NA promoter-TSS (ENSMUSG00000026694.19) protein_coding-promoter-TSS (ENSMUSG00000026694.19) -11 ENSMUSG00000026694.19 ENSMUSG00000026694 ENSMUST00000195027 Eef1aknmt protein_coding Interval_99378 chr2 160438368 160438542 + 0 NA Intergenic Intergenic -71390 ENSMUSG00000074622.4 ENSMUSG00000074622 ENSMUST00000099126 Mafb protein_coding Interval_120796 chr4 150692750 150693230 + 0 NA Intergenic Intergenic -14198 ENSMUSG00000085869.1 ENSMUSG00000085869 ENSMUST00000149065 Gm16079 lincRNA Interval_37503 chr12 69417893 69419083 + 0 NA Intergenic Intergenic -46020 ENSMUSG00000052673.2 ENSMUSG00000052673 ENSMUST00000053451 Gm9887 antisense Interval_58242 chr15 31309205 31310249 + 0 NA intron (ENSMUSG00000022237.17, intron 1 of 2) protein_coding-intron (ENSMUSG00000022237.17, intron 1 of 2) -1533 ENSMUSG00000022237.17 ENSMUSG00000022237 ENSMUST00000227391 Ankrd33b protein_coding Interval_167229 chr9 66349739 66351199 + 0 NA promoter-TSS (ENSMUSG00000038664.16) protein_coding-promoter-TSS (ENSMUSG00000038664.16) 19 ENSMUSG00000038664.16 ENSMUSG00000038664 ENSMUST00000130854 Herc1 protein_coding Interval_142553 chr6 143218994 143219636 + 0 NA TTS (ENSMUSG00000030275.6) protein_coding-TTS (ENSMUSG00000030275.6) 2133 ENSMUSG00000107802.1 ENSMUSG00000107802 ENSMUST00000204351 1700126G02Rik antisense Interval_3321 chr1 56898416 56898868 + 0 NA intron (ENSMUSG00000038331.15, intron 4 of 10) protein_coding-intron (ENSMUSG00000038331.15, intron 3 of 9) 71230 ENSMUSG00000038331.15 ENSMUSG00000038331 ENSMUST00000177282 Satb2 protein_coding Interval_172633 chrX 38600168 38601297 + 0 NA promoter-TSS (ENSMUSG00000000355.13) protein_coding-promoter-TSS (ENSMUSG00000000355.13) -9071 ENSMUSG00000000355.13 ENSMUSG00000000355 ENSMUST00000148938 Mcts1 protein_coding Interval_53352 chr14 56550771 56551460 + 0 NA intron (ENSMUSG00000064128.8, intron 8 of 17) protein_coding-intron (ENSMUSG00000064128.8, intron 7 of 16) 1370 ENSMUSG00000064128.8 ENSMUSG00000064128 ENSMUST00000224748 Cenpj protein_coding Interval_174167 chrX 137037550 137038702 + 0 NA promoter-TSS (ENSMUSG00000044348.14) protein_coding-promoter-TSS (ENSMUSG00000044348.14) -11468 ENSMUSG00000042595.7 ENSMUSG00000042595 ENSMUST00000047852 Fam199x protein_coding Interval_75962 chr17 73881976 73882748 + 0 NA Intergenic Intergenic -11012 ENSMUSG00000117257.1 ENSMUSG00000117257 ENSMUST00000233573 Gm4948 processed_pseudogene Interval_7844 chr1 134092753 134093935 + 0 NA Intergenic Intergenic 5815 ENSMUSG00000102380.1 ENSMUSG00000102380 ENSMUST00000193617 Gm38140 TEC Interval_60127 chr15 65943508 65943750 + 0 NA intron (ENSMUSG00000072511.3, intron 8 of 17) protein_coding-intron (ENSMUSG00000072511.3, intron 8 of 16) -14696 ENSMUSG00000092454.1 ENSMUSG00000092454 ENSMUST00000173338 Gm2991 processed_pseudogene Interval_143844 chr7 16698832 16700214 + 0 NA Intergenic Intergenic -5154 ENSMUSG00000108370.1 ENSMUSG00000108370 ENSMUST00000206386 Gm8209 processed_pseudogene Interval_116000 chr4 106892839 106893457 + 0 NA Intergenic Intergenic -45228 ENSMUSG00000086940.1 ENSMUSG00000086940 ENSMUST00000151369 Gm12746 lincRNA Interval_82634 chr18 75544139 75544593 + 0 NA intron (ENSMUSG00000052928.9, intron 7 of 11) protein_coding-intron (ENSMUSG00000052928.9, intron 7 of 11) 29721 ENSMUSG00000097712.1 ENSMUSG00000097712 ENSMUST00000181913 Gm10532 antisense Interval_141387 chr6 127886713 127888373 + 0 NA promoter-TSS (ENSMUSG00000030351.5) protein_coding-promoter-TSS (ENSMUSG00000030351.5) -229 ENSMUSG00000030351.5 ENSMUSG00000030351 ENSMUST00000149801 Tspan11 protein_coding Interval_126678 chr5 92000891 92001069 + 0 NA Intergenic Intergenic 13505 ENSMUSG00000096035.2 ENSMUSG00000096035 ENSMUST00000178614 Odaph protein_coding Interval_43776 chr13 36316526 36316759 + 0 NA intron (ENSMUSG00000021420.13, intron 4 of 7) protein_coding-intron (ENSMUSG00000021420.13, intron 4 of 6) -10316 ENSMUSG00000021420.13 ENSMUSG00000021420 ENSMUST00000225048 Fars2 protein_coding Interval_40396 chr12 104617105 104617832 + 0 NA Intergenic Intergenic 97500 ENSMUSG00000112954.1 ENSMUSG00000112954 ENSMUST00000222329 Gm49732 lincRNA Interval_169247 chr9 95811258 95811448 + 0 NA intron (ENSMUSG00000049493.13, intron 1 of 15) protein_coding-intron (ENSMUSG00000049493.13, intron 1 of 15) 33958 ENSMUSG00000049493.13 ENSMUSG00000049493 ENSMUST00000135816 Pls1 protein_coding Interval_124017 chr5 37257195 37258217 + 0 NA intron (ENSMUSG00000029121.16, intron 1 of 6) protein_coding-intron (ENSMUSG00000029121.16, intron 1 of 13) 10421 ENSMUSG00000029121.16 ENSMUSG00000029121 ENSMUST00000200834 Crmp1 protein_coding Interval_130404 chr5 127352817 127353719 + 0 NA intron (ENSMUSG00000034324.16, intron 1 of 8) protein_coding-intron (ENSMUSG00000034324.16, intron 1 of 8) 44251 ENSMUSG00000104971.1 ENSMUSG00000104971 ENSMUST00000196548 9430087B13Rik TEC Interval_85843 chr19 32304180 32305155 + 0 NA intron (ENSMUSG00000040451.18, intron 2 of 2) protein_coding-intron (ENSMUSG00000040451.18, intron 2 of 9) -27703 ENSMUSG00000040451.18 ENSMUSG00000040451 ENSMUST00000141252 Sgms1 protein_coding Interval_85682 chr19 29653504 29653951 + 0 NA Intergenic Intergenic -7700 ENSMUSG00000046324.12 ENSMUSG00000046324 ENSMUST00000160907 Ermp1 protein_coding Interval_170898 chr9 111764881 111765152 + 0 NA Intergenic Intergenic -74687 ENSMUSG00000032502.8 ENSMUSG00000032502 ENSMUST00000162345 Stac protein_coding Interval_55996 chr14 103778058 103778385 + 0 NA Intergenic Intergenic 65474 ENSMUSG00000022122.15 ENSMUSG00000022122 ENSMUST00000227824 Ednrb protein_coding Interval_130153 chr5 124562705 124562998 + 0 NA intron (ENSMUSG00000029389.17, intron 9 of 11) protein_coding-intron (ENSMUSG00000029389.17, intron 10 of 13) 7190 ENSMUSG00000029389.17 ENSMUSG00000029389 ENSMUST00000142451 Ddx55 protein_coding Interval_81152 chr18 55001879 55002523 + 0 NA intron (ENSMUSG00000096948.2, intron 1 of 4) antisense-intron (ENSMUSG00000096948.2, intron 1 of 4) 11936 ENSMUSG00000096948.2 ENSMUSG00000096948 ENSMUST00000181765 Gm4221 antisense Interval_104560 chr3 68187483 68187776 + 0 NA intron (ENSMUSG00000027777.15, intron 1 of 6) protein_coding-intron (ENSMUSG00000027777.15, intron 1 of 7) -145567 ENSMUSG00000102846.1 ENSMUSG00000102846 ENSMUST00000193165 Gm10292 processed_pseudogene Interval_123698 chr5 34583691 34583998 + 0 NA intron (ENSMUSG00000029106.14, intron 1 of 17) protein_coding-intron (ENSMUSG00000029106.14, intron 1 of 15) 8756 ENSMUSG00000107128.1 ENSMUSG00000107128 ENSMUST00000202995 Gm42867 TEC Interval_108745 chr3 130978161 130979546 + 0 NA Intergenic Intergenic -41516 ENSMUSG00000106095.2 ENSMUSG00000106095 ENSMUST00000196438 2010110G14Rik lincRNA Interval_163169 chr9 16548807 16549029 + 0 NA Intergenic Intergenic -47633 ENSMUSG00000074505.6 ENSMUSG00000074505 ENSMUST00000213517 Fat3 protein_coding Interval_90200 chr2 28980548 28980765 + 0 NA intron (ENSMUSG00000079502.8, intron 3 of 5) protein_coding-intron (ENSMUSG00000079502.8, intron 3 of 5) -46047 ENSMUSG00000083773.4 ENSMUSG00000083773 ENSMUST00000121658 Gm13394 processed_pseudogene Interval_1395 chr1 21284277 21284542 + 0 NA TTS (ENSMUSG00000025936.15) transcribed_unprocessed_pseudogene-TTS (ENSMUSG00000025936.15) 12006 ENSMUSG00000096375.2 ENSMUSG00000096375 ENSMUST00000178379 Gm7094 unprocessed_pseudogene Interval_121499 chr4 156202873 156204258 + 0 NA exon (ENSMUSG00000078349.3, exon 1 of 1) processed_transcript-exon (ENSMUSG00000078349.3, exon 1 of 1) 281 ENSMUSG00000078349.3 ENSMUSG00000078349 ENSMUST00000105140 AW011738 processed_transcript Interval_16418 chr10 62802887 62804325 + 0 NA TTS (ENSMUSG00000047146.17) protein_coding-TTS (ENSMUSG00000047146.17) -20419 ENSMUSG00000112806.1 ENSMUSG00000112806 ENSMUST00000218355 Gm48146 TEC Interval_4341 chr1 72823650 72825081 + 0 NA promoter-TSS (ENSMUSG00000039323.18) protein_coding-promoter-TSS (ENSMUSG00000039323.18) -24334 ENSMUSG00000039323.18 ENSMUSG00000039323 ENSMUST00000155703 Igfbp2 protein_coding Interval_25028 chr11 43381919 43382166 + 0 NA Intergenic Intergenic -3440 ENSMUSG00000084889.1 ENSMUSG00000084889 ENSMUST00000153791 Gm12148 lincRNA Interval_67456 chr16 48962629 48963700 + 0 NA intron (ENSMUSG00000064061.13, intron 8 of 31) protein_coding-intron (ENSMUSG00000064061.13, intron 8 of 30) -20062 ENSMUSG00000065667.1 ENSMUSG00000065667 ENSMUST00000083733 Gm22576 snRNA Interval_167451 chr9 69461220 69461453 + 0 NA intron (ENSMUSG00000032231.14, intron 2 of 8) protein_coding-intron (ENSMUSG00000032231.14, intron 1 of 12) 4392 ENSMUSG00000093042.1 ENSMUSG00000093042 ENSMUST00000175301 Mir3109 miRNA Interval_116832 chr4 117565033 117565466 + 0 NA intron (ENSMUSG00000033423.16, intron 1 of 7) protein_coding-intron (ENSMUSG00000033423.16, intron 3 of 8) 491 ENSMUSG00000033423.16 ENSMUSG00000033423 ENSMUST00000134379 Eri3 protein_coding Interval_45196 chr13 53139221 53140711 + 0 NA intron (ENSMUSG00000021464.14, intron 2 of 2) protein_coding-intron (ENSMUSG00000021464.14, intron 2 of 8) 111048 ENSMUSG00000112952.1 ENSMUSG00000112952 ENSMUST00000222184 Gm48336 lincRNA Interval_140779 chr6 121260401 121262137 + 0 NA promoter-TSS (ENSMUSG00000030107.10) protein_coding-promoter-TSS (ENSMUSG00000030107.10) -140 ENSMUSG00000030107.10 ENSMUSG00000030107 ENSMUST00000204710 Usp18 protein_coding Interval_162439 chr8 128737303 128737559 + 0 NA intron (ENSMUSG00000025808.17, intron 9 of 10) protein_coding-intron (ENSMUSG00000025808.17, intron 5 of 7) 13098 ENSMUSG00000025809.15 ENSMUSG00000025809 ENSMUST00000149116 Itgb1 protein_coding Interval_39045 chr12 84648219 84650721 + 0 NA TTS (ENSMUSG00000071235.12) protein_coding-TTS (ENSMUSG00000071235.12) 6915 ENSMUSG00000071235.12 ENSMUSG00000071235 ENSMUST00000095551 Vrtn protein_coding Interval_7368 chr1 130596660 130596861 + 0 NA exon (ENSMUSG00000042554.10, exon 7 of 12) protein_coding-exon (ENSMUSG00000042554.10, exon 7 of 12) -1084 ENSMUSG00000064395.1 ENSMUSG00000064395 ENSMUST00000082461 Gm23623 snRNA Interval_142547 chr6 143190965 143192043 + 0 NA exon (ENSMUSG00000030275.6, exon 4 of 4) protein_coding-exon (ENSMUSG00000030275.6, exon 4 of 4) 24250 ENSMUSG00000030275.6 ENSMUSG00000030275 ENSMUST00000205256 Etnk1 protein_coding Interval_142003 chr6 136489098 136491343 + 0 NA Intergenic Intergenic 1413 ENSMUSG00000071141.7 ENSMUSG00000071141 ENSMUST00000120093 Rpl36a-ps3 processed_pseudogene Interval_88273 chr2 3181954 3182353 + 0 NA intron (ENSMUSG00000050530.14, intron 2 of 7) protein_coding-intron (ENSMUSG00000050530.14, intron 2 of 7) 63771 ENSMUSG00000050530.14 ENSMUSG00000050530 ENSMUST00000062934 Fam171a1 protein_coding Interval_108476 chr3 127525394 127526049 + 0 NA Intergenic Intergenic 12821 ENSMUSG00000104957.1 ENSMUSG00000104957 ENSMUST00000196862 Gm43354 processed_pseudogene Interval_89738 chr2 25141283 25141694 + 0 NA TTS (ENSMUSG00000087028.7) lincRNA-TTS (ENSMUSG00000087028.7) 3835 ENSMUSG00000087028.7 ENSMUSG00000087028 ENSMUST00000149619 Gm13387 lincRNA Interval_108000 chr3 119537845 119538097 + 0 NA Intergenic Intergenic 100903 ENSMUSG00000087806.1 ENSMUSG00000087806 ENSMUST00000157181 Gm23432 snoRNA Interval_80219 chr18 38356076 38356949 + 0 NA promoter-TSS (ENSMUSG00000088384.1) rRNA-promoter-TSS (ENSMUSG00000088384.1) -66 ENSMUSG00000088384.1 ENSMUSG00000088384 ENSMUST00000157759 Gm24690 rRNA Interval_75625 chr17 69475221 69475947 + 0 NA exon (ENSMUSG00000117053.1, exon 1 of 2) antisense-exon (ENSMUSG00000117053.1, exon 1 of 2) 291 ENSMUSG00000117053.1 ENSMUSG00000117053 ENSMUST00000232967 A730049N16Rik antisense Interval_164 JH584304.1 45877 51996 + 0 NA NA NA NA NA Interval_138317 chr6 87150525 87150992 + 0 NA intron (ENSMUSG00000033420.12, intron 16 of 16) protein_coding-intron (ENSMUSG00000033420.12, intron 17 of 17) -9906 ENSMUSG00000108195.1 ENSMUSG00000108195 ENSMUST00000204151 Gm44415 TEC Interval_78461 chr18 12998904 12999267 + 0 NA Intergenic Intergenic -7952 ENSMUSG00000037346.5 ENSMUSG00000037346 ENSMUST00000234565 Hrh4 protein_coding Interval_45456 chr13 55252913 55253286 + 0 NA TTS (ENSMUSG00000114359.1) processed_pseudogene-TTS (ENSMUSG00000114359.1) 1302 ENSMUSG00000114359.1 ENSMUSG00000114359 ENSMUST00000224833 Gm47816 processed_pseudogene Interval_39270 chr12 86349955 86350401 + 0 NA Intergenic Intergenic 2201 ENSMUSG00000113230.1 ENSMUSG00000113230 ENSMUST00000221001 Gm48101 processed_pseudogene Interval_17567 chr10 77816462 77816866 + 0 NA intron (ENSMUSG00000112600.1, intron 1 of 1) protein_coding-intron (ENSMUSG00000069581.12, intron 1 of 11) 1982 ENSMUSG00000112600.1 ENSMUSG00000112600 ENSMUST00000220393 Gm49918 protein_coding Interval_54059 chr14 64858478 64858909 + 0 NA intron (ENSMUSG00000021972.14, intron 4 of 9) protein_coding-intron (ENSMUSG00000021972.14, intron 5 of 10) -19434 ENSMUSG00000102764.1 ENSMUSG00000102764 ENSMUST00000191712 Gm37183 TEC Interval_131640 chr5 139024301 139024560 + 0 NA promoter-TSS (ENSMUSG00000025855.13) protein_coding-promoter-TSS (ENSMUSG00000025855.13) 29374 ENSMUSG00000075585.3 ENSMUSG00000075585 ENSMUST00000187923 6330403L08Rik antisense Interval_66335 chr16 33221390 33221749 + 0 NA intron (ENSMUSG00000022807.9, intron 7 of 12) protein_coding-intron (ENSMUSG00000022807.9, intron 7 of 12) -29873 ENSMUSG00000022808.5 ENSMUSG00000022808 ENSMUST00000231242 Snx4 protein_coding Interval_57597 chr15 12697534 12698163 + 0 NA intron (ENSMUSG00000022197.16, intron 2 of 4) protein_coding-intron (ENSMUSG00000022197.16, intron 2 of 4) 2724 ENSMUSG00000095842.1 ENSMUSG00000095842 ENSMUST00000178350 Gm24302 miRNA Interval_106189 chr3 94465122 94466338 + 0 NA intron (ENSMUSG00000028139.5, intron 3 of 3) protein_coding-intron (ENSMUSG00000028139.5, intron 6 of 6) 7192 ENSMUSG00000028139.5 ENSMUSG00000028139 ENSMUST00000184619 Riiad1 protein_coding Interval_172589 chrX 37144798 37145239 + 0 NA intron (ENSMUSG00000016409.4, intron 8 of 8) protein_coding-intron (ENSMUSG00000016409.4, intron 8 of 8) 8602 ENSMUSG00000016409.4 ENSMUSG00000016409 ENSMUST00000152906 Nkap protein_coding Interval_22764 chr11 14958899 14959550 + 0 NA Intergenic Intergenic -89934 ENSMUSG00000084183.1 ENSMUSG00000084183 ENSMUST00000121361 Gm12009 processed_pseudogene Interval_89383 chr2 20271983 20272622 + 0 NA intron (ENSMUSG00000036617.17, intron 2 of 7) protein_coding-intron (ENSMUSG00000036617.17, intron 2 of 7) -8217 ENSMUSG00000065253.1 ENSMUSG00000065253 ENSMUST00000083319 Gm23970 snRNA Interval_81823 chr18 65021723 65022636 + 0 NA intron (ENSMUSG00000024589.18, intron 2 of 4) protein_coding-intron (ENSMUSG00000024589.18, intron 2 of 29) -21004 ENSMUSG00000117895.1 ENSMUSG00000117895 ENSMUST00000237218 Gm50368 antisense Interval_174828 chrX 168659983 168660467 + 0 NA intron (ENSMUSG00000031358.17, intron 9 of 9) protein_coding-intron (ENSMUSG00000031358.17, intron 10 of 12) -1207 ENSMUSG00000031358.17 ENSMUSG00000031358 ENSMUST00000129860 Msl3 protein_coding Interval_33715 chr11 118040980 118041777 + 0 NA intron (ENSMUSG00000033987.16, intron 68 of 80) protein_coding-intron (ENSMUSG00000033987.16, intron 68 of 80) 29035 ENSMUSG00000017715.11 ENSMUSG00000017715 ENSMUST00000155507 Pgs1 protein_coding Interval_33711 chr11 118021387 118022693 + 0 NA exon (ENSMUSG00000033987.16, exon 81 of 81) protein_coding-exon (ENSMUSG00000033987.16, exon 81 of 81) 9697 ENSMUSG00000017715.11 ENSMUSG00000017715 ENSMUST00000155507 Pgs1 protein_coding Interval_73932 chr17 45552034 45552340 + 0 NA Intergenic Intergenic -2510 ENSMUSG00000096847.2 ENSMUSG00000096847 ENSMUST00000180252 Tmem151b protein_coding Interval_127653 chr5 106295405 106297193 + 0 NA Intergenic Intergenic 24089 ENSMUSG00000106669.1 ENSMUSG00000106669 ENSMUST00000196978 Gm38433 processed_pseudogene Interval_157119 chr8 65492009 65492359 + 0 NA Intergenic Intergenic 124883 ENSMUSG00000064905.1 ENSMUSG00000064905 ENSMUST00000082971 Gm25403 misc_RNA Interval_24662 chr11 35734529 35735257 + 0 NA Intergenic Intergenic -34591 ENSMUSG00000018846.8 ENSMUSG00000018846 ENSMUST00000018990 Pank3 protein_coding Interval_22716 chr11 13810930 13811883 + 0 NA Intergenic Intergenic -350673 ENSMUSG00000081631.1 ENSMUSG00000081631 ENSMUST00000121451 Gm12005 processed_pseudogene Interval_59148 chr15 44836458 44836697 + 0 NA intron (ENSMUSG00000060530.2, intron 2 of 9) transcribed_processed_pseudogene-intron (ENSMUSG00000060530.2, intron 2 of 2) -48514 ENSMUSG00000022340.15 ENSMUSG00000022340 ENSMUST00000228639 Sybu protein_coding Interval_17741 chr10 79834530 79835428 + 0 NA Intergenic Intergenic 10292 ENSMUSG00000035852.11 ENSMUSG00000035852 ENSMUST00000218531 Misp protein_coding Interval_135535 chr6 40089068 40090034 + 0 NA intron (ENSMUSG00000057716.7, intron 2 of 3) protein_coding-intron (ENSMUSG00000057716.7, intron 2 of 3) -9171 ENSMUSG00000102623.1 ENSMUSG00000102623 ENSMUST00000194880 Gm37673 TEC Interval_33299 chr11 115779150 115779543 + 0 NA intron (ENSMUSG00000020747.18, intron 2 of 4) protein_coding-intron (ENSMUSG00000020747.18, intron 2 of 31) -1353 ENSMUSG00000020747.18 ENSMUSG00000020747 ENSMUST00000125918 Tmem94 protein_coding Interval_118993 chr4 134894251 134895115 + 0 NA intron (ENSMUSG00000028825.7, intron 9 of 9) protein_coding-intron (ENSMUSG00000028825.7, intron 9 of 9) 14873 ENSMUSG00000028825.7 ENSMUSG00000028825 ENSMUST00000136163 Rhd protein_coding Interval_28452 chr11 75990995 75992144 + 0 NA Intergenic Intergenic -8343 ENSMUSG00000053783.5 ENSMUSG00000053783 ENSMUST00000066408 1700016K19Rik protein_coding Interval_150245 chr7 108943195 108944266 + 0 NA TTS (ENSMUSG00000031029.6) protein_coding-TTS (ENSMUSG00000031029.6) 5335 ENSMUSG00000031029.6 ENSMUSG00000031029 ENSMUST00000147369 Eif3f protein_coding Interval_9354 chr1 156532074 156533179 + 0 NA Intergenic Intergenic 8614 ENSMUSG00000101523.2 ENSMUSG00000101523 ENSMUST00000190422 Csnk2a3 processed_pseudogene Interval_42129 chr13 9044240 9045556 + 0 NA intron (ENSMUSG00000113543.1, intron 2 of 4) lincRNA-intron (ENSMUSG00000113543.1, intron 2 of 2) 31553 ENSMUSG00000113543.1 ENSMUSG00000113543 ENSMUST00000221989 Gm36264 lincRNA Interval_139577 chr6 101524726 101525788 + 0 NA intron (ENSMUSG00000108274.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000108274.1, intron 1 of 2) 5602 ENSMUSG00000108274.1 ENSMUSG00000108274 ENSMUST00000205133 Gm44169 lincRNA Interval_86906 chr19 44750286 44751238 + 0 NA Intergenic Intergenic -5283 ENSMUSG00000004231.15 ENSMUSG00000004231 ENSMUST00000173346 Pax2 protein_coding Interval_170332 chr9 107192795 107194195 + 0 NA exon (ENSMUSG00000092125.1, exon 1 of 1) processed_pseudogene-exon (ENSMUSG00000092125.1, exon 1 of 1) 702 ENSMUSG00000092125.1 ENSMUSG00000092125 ENSMUST00000164248 AA543401 processed_pseudogene Interval_124937 chr5 61122524 61122734 + 0 NA Intergenic Intergenic -176980 ENSMUSG00000105903.1 ENSMUSG00000105903 ENSMUST00000199566 1700014F14Rik lincRNA Interval_97366 chr2 135504445 135505172 + 0 NA intron (ENSMUSG00000085631.1, intron 1 of 1) antisense-intron (ENSMUSG00000085631.1, intron 1 of 1) 78776 ENSMUSG00000085631.1 ENSMUSG00000085631 ENSMUST00000129868 9630028H03Rik antisense Interval_25369 chr11 46766028 46767041 + 0 NA intron (ENSMUSG00000040405.13, intron 4 of 7) protein_coding-intron (ENSMUSG00000040405.13, intron 3 of 7) 31454 ENSMUSG00000040405.13 ENSMUSG00000040405 ENSMUST00000047568 Havcr1 protein_coding Interval_69263 chr16 91760857 91761441 + 0 NA intron (ENSMUSG00000022957.20, intron 1 of 6) protein_coding-intron (ENSMUSG00000022957.20, intron 1 of 28) -32552 ENSMUSG00000058240.14 ENSMUSG00000058240 ENSMUST00000123751 Cryzl1 protein_coding Interval_103713 chr3 51888831 51889320 + 0 NA intron (ENSMUSG00000061143.15, intron 1 of 4) protein_coding-intron (ENSMUSG00000061143.15, intron 1 of 4) -2184 ENSMUSG00000102786.1 ENSMUSG00000102786 ENSMUST00000192701 Gm38252 TEC Interval_87261 chr19 47259531 47260029 + 0 NA TTS (ENSMUSG00000053617.12) protein_coding-TTS (ENSMUSG00000053617.12) 7537 ENSMUSG00000118029.1 ENSMUSG00000118029 ENSMUST00000237690 AC132288.1 TEC Interval_148021 chr7 78294284 78294549 + 0 NA intron (ENSMUSG00000059146.12, intron 12 of 18) protein_coding-intron (ENSMUSG00000059146.12, intron 12 of 16) 40120 ENSMUSG00000108788.1 ENSMUSG00000108788 ENSMUST00000206993 4921513I08Rik antisense Interval_153785 chr8 8576525 8576925 + 0 NA intron (ENSMUSG00000108932.1, intron 1 of 3) lincRNA-intron (ENSMUSG00000108932.1, intron 1 of 3) 203 ENSMUSG00000108932.1 ENSMUSG00000108932 ENSMUST00000208799 Gm31463 lincRNA Interval_29962 chr11 88399205 88399541 + 0 NA intron (ENSMUSG00000069769.13, intron 3 of 5) protein_coding-intron (ENSMUSG00000069769.13, intron 8 of 13) 34141 ENSMUSG00000084411.2 ENSMUSG00000084411 ENSMUST00000120278 Gm11510 processed_pseudogene Interval_156826 chr8 60896758 60897409 + 0 NA TTS (ENSMUSG00000038005.15) protein_coding-TTS (ENSMUSG00000038005.15) -8948 ENSMUSG00000038005.15 ENSMUSG00000038005 ENSMUST00000211016 Hpf1 protein_coding Interval_68541 chr16 78508817 78509003 + 0 NA Intergenic Intergenic 19230 ENSMUSG00000116959.1 ENSMUSG00000116959 ENSMUST00000232118 Gm49604 TEC Interval_73830 chr17 44243862 44244886 + 0 NA intron (ENSMUSG00000023959.10, intron 3 of 5) protein_coding-intron (ENSMUSG00000023959.10, intron 3 of 5) 109606 ENSMUSG00000023959.10 ENSMUSG00000023959 ENSMUST00000233193 Clic5 protein_coding Interval_129270 chr5 118574481 118576109 + 0 NA intron (ENSMUSG00000018076.12, intron 1 of 1) protein_coding-intron (ENSMUSG00000018076.12, intron 1 of 30) -12194 ENSMUSG00000106912.1 ENSMUSG00000106912 ENSMUST00000201036 Gm43785 TEC Interval_4667 chr1 75862893 75863356 + 0 NA Intergenic Intergenic 155632 ENSMUSG00000099996.1 ENSMUSG00000099996 ENSMUST00000188786 Gm29065 lincRNA Interval_127379 chr5 103600694 103601033 + 0 NA Intergenic Intergenic -1724 ENSMUSG00000088474.1 ENSMUSG00000088474 ENSMUST00000157849 Gm23085 misc_RNA Interval_119618 chr4 138777815 138778055 + 0 NA promoter-TSS (ENSMUSG00000041202.12) protein_coding-promoter-TSS (ENSMUSG00000041202.12) 41 ENSMUSG00000041202.12 ENSMUSG00000041202 ENSMUST00000105806 Pla2g2d protein_coding Interval_111977 chr4 32931701 32932660 + 0 NA intron (ENSMUSG00000040183.13, intron 1 of 15) protein_coding-intron (ENSMUSG00000040183.13, intron 1 of 14) -32708 ENSMUSG00000094344.1 ENSMUSG00000094344 ENSMUST00000180255 Gm11942 processed_pseudogene Interval_87114 chr19 46218386 46218797 + 0 NA intron (ENSMUSG00000025224.16, intron 3 of 18) protein_coding-intron (ENSMUSG00000025224.16, intron 3 of 39) -12733 ENSMUSG00000093525.1 ENSMUSG00000093525 ENSMUST00000175770 Gm8974 processed_pseudogene Interval_39935 chr12 99907425 99907986 + 0 NA intron (ENSMUSG00000021177.16, intron 7 of 15) protein_coding-intron (ENSMUSG00000021177.16, intron 6 of 14) 2777 ENSMUSG00000113223.1 ENSMUSG00000113223 ENSMUST00000221445 Gm48147 unprocessed_pseudogene Interval_107849 chr3 116229862 116230259 + 0 NA Intergenic Intergenic 23403 ENSMUSG00000068696.6 ENSMUSG00000068696 ENSMUST00000199128 Gpr88 protein_coding Interval_81754 chr18 64428094 64428810 + 0 NA TTS (ENSMUSG00000118375.1) processed_pseudogene-TTS (ENSMUSG00000118375.1) 217 ENSMUSG00000118375.1 ENSMUSG00000118375 ENSMUST00000237830 Gm36804 processed_pseudogene Interval_173307 chrX 77720581 77720796 + 0 NA Intergenic Intergenic -2705 ENSMUSG00000081358.1 ENSMUSG00000081358 ENSMUST00000120309 Gm14746 processed_pseudogene Interval_24010 chr11 29437461 29437655 + 0 NA intron (ENSMUSG00000032740.17, intron 7 of 30) protein_coding-intron (ENSMUSG00000032740.17, intron 7 of 31) 63210 ENSMUSG00000032740.17 ENSMUSG00000032740 ENSMUST00000144450 Ccdc88a protein_coding Interval_84749 chr19 16197538 16198057 + 0 NA intron (ENSMUSG00000024639.5, intron 1 of 2) protein_coding-intron (ENSMUSG00000024639.5, intron 1 of 6) -32992 ENSMUSG00000057990.4 ENSMUSG00000057990 ENSMUST00000075293 E030024N20Rik processed_pseudogene Interval_30471 chr11 94585276 94585794 + 0 NA intron (ENSMUSG00000076435.3, intron 1 of 6) protein_coding-intron (ENSMUSG00000076435.3, intron 1 of 15) 16234 ENSMUSG00000076435.3 ENSMUSG00000076435 ENSMUST00000155122 Acsf2 protein_coding Interval_40765 chr12 108240836 108241918 + 0 NA intron (ENSMUSG00000084883.2, intron 1 of 5) protein_coding-intron (ENSMUSG00000084883.2, intron 1 of 6) 34048 ENSMUSG00000084883.2 ENSMUSG00000084883 ENSMUST00000136175 Ccdc85c protein_coding Interval_112458 chr4 41368266 41368487 + 0 NA intron (ENSMUSG00000028437.14, intron 2 of 5) protein_coding-intron (ENSMUSG00000028437.14, intron 2 of 6) -2872 ENSMUSG00000028437.14 ENSMUSG00000028437 ENSMUST00000132235 Ubap1 protein_coding Interval_55173 chr14 78931166 78931408 + 0 NA intron (ENSMUSG00000058997.8, intron 5 of 12) protein_coding-intron (ENSMUSG00000058997.8, intron 5 of 44) 15940 ENSMUSG00000115090.1 ENSMUSG00000115090 ENSMUST00000228931 Gm49016 antisense Interval_12147 chr1 190127382 190127633 + 0 NA intron (ENSMUSG00000010175.13, intron 4 of 4) protein_coding-intron (ENSMUSG00000010175.13, intron 4 of 4) -41163 ENSMUSG00000099404.1 ENSMUSG00000099404 ENSMUST00000189880 Gm28172 antisense Interval_119315 chr4 136829329 136830745 + 0 NA intron (ENSMUSG00000028664.14, intron 1 of 2) protein_coding-intron (ENSMUSG00000028664.14, intron 1 of 15) 56150 ENSMUSG00000036905.8 ENSMUSG00000036905 ENSMUST00000046384 C1qb protein_coding Interval_138543 chr6 89070195 89070412 + 0 NA intron (ENSMUSG00000055403.13, intron 1 of 2) lincRNA-intron (ENSMUSG00000055403.13, intron 1 of 2) -70691 ENSMUSG00000090254.7 ENSMUSG00000090254 ENSMUST00000160361 Gm1965 lincRNA Interval_69500 chr16 93902723 93903302 + 0 NA intron (ENSMUSG00000022945.12, intron 12 of 13) protein_coding-intron (ENSMUSG00000022945.12, intron 12 of 13) 10271 ENSMUSG00000022945.12 ENSMUSG00000022945 ENSMUST00000128316 Chaf1b protein_coding Interval_5403 chr1 88534086 88534302 + 0 NA Intergenic Intergenic -17323 ENSMUSG00000100798.1 ENSMUSG00000100798 ENSMUST00000189394 Gm19589 lincRNA Interval_49538 chr13 112800228 112801680 + 0 NA promoter-TSS (ENSMUSG00000021759.14) protein_coding-promoter-TSS (ENSMUSG00000021759.14) 91 ENSMUSG00000021759.14 ENSMUSG00000021759 ENSMUST00000070951 Plpp1 protein_coding Interval_63088 chr15 99017446 99018010 + 0 NA Intergenic Intergenic 11671 ENSMUSG00000064081.4 ENSMUSG00000064081 ENSMUST00000079818 Gm8973 processed_pseudogene Interval_47148 chr13 76311721 76311948 + 0 NA Intergenic Intergenic 9445 ENSMUSG00000092732.1 ENSMUSG00000092732 ENSMUST00000174991 Gm24025 miRNA Interval_54524 chr14 70470131 70470438 + 0 NA Intergenic Intergenic 11761 ENSMUSG00000003469.9 ENSMUSG00000003469 ENSMUST00000159180 Phyhip protein_coding Interval_169184 chr9 95342488 95342844 + 0 NA Intergenic Intergenic 64056 ENSMUSG00000033350.7 ENSMUSG00000033350 ENSMUST00000036267 Chst2 protein_coding Interval_62939 chr15 98035022 98036778 + 0 NA Intergenic Intergenic -31409 ENSMUSG00000022483.17 ENSMUSG00000022483 ENSMUST00000230148 Col2a1 protein_coding Interval_97432 chr2 136143366 136143562 + 0 NA intron (ENSMUSG00000039913.12, intron 3 of 9) protein_coding-intron (ENSMUSG00000039913.12, intron 4 of 10) 6458 ENSMUSG00000085383.1 ENSMUSG00000085383 ENSMUST00000137802 Gm14218 antisense Interval_96317 chr2 121573792 121574767 + 0 NA intron (ENSMUSG00000027238.17, intron 5 of 14) protein_coding-intron (ENSMUSG00000027238.17, intron 5 of 13) -22928 ENSMUSG00000027238.17 ENSMUSG00000027238 ENSMUST00000153704 Frmd5 protein_coding Interval_105899 chr3 89976399 89976605 + 0 NA Intergenic Intergenic -7844 ENSMUSG00000105082.2 ENSMUSG00000105082 ENSMUST00000199555 Aqp10-ps unprocessed_pseudogene Interval_162678 chr9 7763630 7764789 + 0 NA promoter-TSS (ENSMUSG00000050912.15) protein_coding-promoter-TSS (ENSMUSG00000050912.15) 44 ENSMUSG00000050912.15 ENSMUSG00000050912 ENSMUST00000154371 Tmem123 protein_coding Interval_103617 chr3 51215528 51216722 + 0 NA Intergenic Intergenic -15792 ENSMUSG00000103313.1 ENSMUSG00000103313 ENSMUST00000195382 Gm38357 TEC Interval_169822 chr9 102211401 102212247 + 0 NA intron (ENSMUSG00000032537.15, intron 2 of 4) protein_coding-intron (ENSMUSG00000032537.15, intron 2 of 15) 39086 ENSMUSG00000102963.1 ENSMUSG00000102963 ENSMUST00000192536 Gm37945 TEC Interval_16200 chr10 61402596 61402960 + 0 NA Intergenic Intergenic -15194 ENSMUSG00000037171.6 ENSMUSG00000037171 ENSMUST00000049339 Nodal protein_coding Interval_101077 chr2 177172283 177173732 + 0 NA promoter-TSS (ENSMUSG00000081590.1) unprocessed_pseudogene-promoter-TSS (ENSMUSG00000081590.1) -137 ENSMUSG00000081590.1 ENSMUSG00000081590 ENSMUST00000122158 Gm14413 unprocessed_pseudogene Interval_119918 chr4 140914264 140914473 + 0 NA intron (ENSMUSG00000028927.6, intron 1 of 15) protein_coding-intron (ENSMUSG00000028927.6, intron 1 of 15) -4316 ENSMUSG00000064443.1 ENSMUSG00000064443 ENSMUST00000082509 Gm26226 snRNA Interval_141539 chr6 129005584 129005808 + 0 NA intron (ENSMUSG00000087150.7, intron 5 of 6) transcribed_unprocessed_pseudogene-intron (ENSMUSG00000087150.7, intron 5 of 6) -8416 ENSMUSG00000089728.3 ENSMUSG00000089728 ENSMUST00000204981 Clec2f protein_coding Interval_30175 chr11 90167726 90168489 + 0 NA Intergenic Intergenic 17020 ENSMUSG00000077706.1 ENSMUSG00000077706 ENSMUST00000104518 n-R5s72 rRNA Interval_38068 chr12 75464124 75464691 + 0 NA intron (ENSMUSG00000021051.10, intron 10 of 12) protein_coding-intron (ENSMUSG00000021051.10, intron 11 of 13) 44338 ENSMUSG00000112254.1 ENSMUSG00000112254 ENSMUST00000218033 Gm47690 TEC Interval_101620 chr3 7965665 7966330 + 0 NA Intergenic Intergenic -11115 ENSMUSG00000100010.5 ENSMUSG00000100010 ENSMUST00000187729 1700010I02Rik lincRNA Interval_13552 chr10 19441524 19442198 + 0 NA Intergenic Intergenic -52782 ENSMUSG00000110902.1 ENSMUSG00000110902 ENSMUST00000216664 Gm33104 lincRNA Interval_35940 chr12 32205259 32206105 + 0 NA exon (ENSMUSG00000020573.17, exon 2 of 11) protein_coding-exon (ENSMUSG00000020573.17, exon 2 of 11) 2656 ENSMUSG00000020573.17 ENSMUSG00000020573 ENSMUST00000126814 Pik3cg protein_coding Interval_140595 chr6 119926652 119927391 + 0 NA TTS (ENSMUSG00000045962.16) protein_coding-TTS (ENSMUSG00000045962.16) 8939 ENSMUSG00000030166.14 ENSMUSG00000030166 ENSMUST00000204319 Rad52 protein_coding Interval_28768 chr11 78194232 78195632 + 0 NA exon (ENSMUSG00000044122.15, exon 1 of 3) protein_coding-exon (ENSMUSG00000044122.15, exon 1 of 3) 867 ENSMUSG00000044122.15 ENSMUSG00000044122 ENSMUST00000124772 Proca1 protein_coding Interval_77410 chr17 88529578 88530696 + 0 NA promoter-TSS (ENSMUSG00000034709.8) protein_coding-promoter-TSS (ENSMUSG00000034709.8) -2890 ENSMUSG00000103075.1 ENSMUSG00000103075 ENSMUST00000195386 Gm38109 TEC Interval_145444 chr7 34790417 34791008 + 0 NA intron (ENSMUSG00000060402.8, intron 1 of 2) protein_coding-intron (ENSMUSG00000060402.8, intron 1 of 3) -36900 ENSMUSG00000060402.8 ENSMUSG00000060402 ENSMUST00000205390 Chst8 protein_coding Interval_143471 chr7 7113321 7113584 + 0 NA Intergenic Intergenic 6477 ENSMUSG00000108938.1 ENSMUSG00000108938 ENSMUST00000207478 Gm44583 processed_pseudogene Interval_138420 chr6 88035319 88035589 + 0 NA intron (ENSMUSG00000079477.9, intron 1 of 4) protein_coding-intron (ENSMUSG00000079477.9, intron 1 of 7) 7013 ENSMUSG00000108268.1 ENSMUSG00000108268 ENSMUST00000204735 Gm44187 TEC Interval_140743 chr6 120986790 120988511 + 0 NA intron (ENSMUSG00000051586.17, intron 19 of 33) protein_coding-intron (ENSMUSG00000051586.17, intron 3 of 15) 28806 ENSMUSG00000108171.1 ENSMUSG00000108171 ENSMUST00000203013 Gm43915 antisense Interval_24056 chr11 29830850 29831252 + 0 NA intron (ENSMUSG00000044072.14, intron 13 of 41) protein_coding-intron (ENSMUSG00000044072.14, intron 13 of 41) -5383 ENSMUSG00000078157.1 ENSMUSG00000078157 ENSMUST00000104962 Fem1al protein_coding Interval_33832 chr11 118828891 118829471 + 0 NA intron (ENSMUSG00000025576.17, intron 1 of 13) protein_coding-intron (ENSMUSG00000025576.17, intron 1 of 14) 23607 ENSMUSG00000077065.1 ENSMUSG00000077065 ENSMUST00000103877 Gm25040 miRNA Interval_109317 chr3 138874642 138874884 + 0 NA intron (ENSMUSG00000028152.10, intron 2 of 3) protein_coding-intron (ENSMUSG00000028152.10, intron 2 of 7) -45601 ENSMUSG00000086123.3 ENSMUSG00000086123 ENSMUST00000153140 Gm16060 processed_pseudogene Interval_32540 chr11 108271409 108271775 + 0 NA intron (ENSMUSG00000050965.14, intron 2 of 2) protein_coding-intron (ENSMUSG00000050965.14, intron 2 of 16) 89742 ENSMUSG00000084978.1 ENSMUSG00000084978 ENSMUST00000153899 Gm11655 antisense Interval_33694 chr11 117946860 117948210 + 0 NA Intergenic Intergenic 21916 ENSMUSG00000053113.3 ENSMUSG00000053113 ENSMUST00000132295 Socs3 protein_coding Interval_11955 chr1 187608497 187610194 + 0 NA promoter-TSS (ENSMUSG00000026610.13) protein_coding-promoter-TSS (ENSMUSG00000026610.13) -351 ENSMUSG00000026610.13 ENSMUSG00000026610 ENSMUST00000110938 Esrrg protein_coding Interval_149374 chr7 97800232 97800810 + 0 NA intron (ENSMUSG00000030774.13, intron 1 of 14) protein_coding-intron (ENSMUSG00000030774.13, intron 1 of 1) -62232 ENSMUSG00000042797.9 ENSMUSG00000042797 ENSMUST00000205932 Aqp11 protein_coding Interval_19873 chr10 110766037 110766460 + 0 NA TTS (ENSMUSG00000020185.16) protein_coding-TTS (ENSMUSG00000020185.16) 20783 ENSMUSG00000020185.16 ENSMUSG00000020185 ENSMUST00000174593 E2f7 protein_coding Interval_126264 chr5 85263700 85264445 + 0 NA Intergenic Intergenic -397227 ENSMUSG00000106389.1 ENSMUSG00000106389 ENSMUST00000196930 Gm21006 processed_pseudogene Interval_97817 chr2 144259269 144260498 + 0 NA intron (ENSMUSG00000027423.15, intron 1 of 6) protein_coding-intron (ENSMUSG00000027423.15, intron 3 of 12) 1658 ENSMUSG00000082436.1 ENSMUSG00000082436 ENSMUST00000122145 Gm11688 processed_pseudogene Interval_55244 chr14 79601183 79601873 + 0 NA intron (ENSMUSG00000022024.10, intron 4 of 10) protein_coding-intron (ENSMUSG00000022024.10, intron 5 of 12) 13719 ENSMUSG00000022024.10 ENSMUSG00000022024 ENSMUST00000226320 Sugt1 protein_coding Interval_106684 chr3 98662100 98662591 + 0 NA intron (ENSMUSG00000050064.14, intron 1 of 4) protein_coding-intron (ENSMUSG00000050064.14, intron 1 of 4) 15986 ENSMUSG00000081919.2 ENSMUSG00000081919 ENSMUST00000121475 Gm12399 unprocessed_pseudogene Interval_3593 chr1 59826144 59827263 + 0 NA intron (ENSMUSG00000067336.6, intron 3 of 12) protein_coding-intron (ENSMUSG00000067336.6, intron 3 of 12) -23962 ENSMUSG00000067336.6 ENSMUSG00000067336 ENSMUST00000186246 Bmpr2 protein_coding Interval_12008 chr1 188764982 188765192 + 0 NA intron (ENSMUSG00000026609.15, intron 46 of 70) protein_coding-intron (ENSMUSG00000026609.15, intron 46 of 70) 4611 ENSMUSG00000084550.1 ENSMUSG00000084550 ENSMUST00000122601 Gm25269 snRNA Interval_93383 chr2 72559859 72560067 + 0 NA Intergenic Intergenic 10859 ENSMUSG00000080865.1 ENSMUSG00000080865 ENSMUST00000121450 Eif1-ps3 processed_pseudogene Interval_103315 chr3 38539675 38541016 + 0 NA Intergenic Intergenic 17869 ENSMUSG00000076385.1 ENSMUSG00000076385 ENSMUST00000102430 Gm24462 miRNA Interval_127348 chr5 103333041 103333335 + 0 NA Intergenic Intergenic -10784 ENSMUSG00000104808.1 ENSMUSG00000104808 ENSMUST00000197564 Gm42619 TEC Interval_76151 chr17 75602692 75604392 + 0 NA Intergenic Intergenic -51669 ENSMUSG00000002017.10 ENSMUSG00000002017 ENSMUST00000141969 Fam98a protein_coding Interval_4155 chr1 70927098 70927511 + 0 NA Intergenic Intergenic 112726 ENSMUSG00000089965.1 ENSMUSG00000089965 ENSMUST00000159588 Gm16236 processed_pseudogene Interval_58457 chr15 34798167 34798405 + 0 NA Intergenic Intergenic 28143 ENSMUSG00000115360.1 ENSMUSG00000115360 ENSMUST00000226322 Gm48932 TEC Interval_74756 chr17 56344102 56344415 + 0 NA intron (ENSMUSG00000024201.12, intron 1 of 21) protein_coding-intron (ENSMUSG00000024201.12, intron 1 of 22) 39851 ENSMUSG00000001228.14 ENSMUSG00000001228 ENSMUST00000139654 Uhrf1 protein_coding Interval_46419 chr13 65061388 65063398 + 0 NA Intergenic Intergenic -9896 ENSMUSG00000090658.7 ENSMUSG00000090658 ENSMUST00000182457 Prss47 protein_coding Interval_131577 chr5 138245145 138245737 + 0 NA intron (ENSMUSG00000047592.17, intron 5 of 6) protein_coding-intron (ENSMUSG00000047592.17, intron 4 of 5) -10390 ENSMUSG00000050552.8 ENSMUSG00000050552 ENSMUST00000160157 Lamtor4 protein_coding Interval_143167 chr7 4105054 4106122 + 0 NA intron (ENSMUSG00000086155.7, intron 3 of 8) antisense-intron (ENSMUSG00000086155.7, intron 2 of 6) 3698 ENSMUSG00000075719.1 ENSMUSG00000075719 ENSMUST00000097237 Gm23741 snRNA Interval_103404 chr3 41317783 41318022 + 0 NA Intergenic Intergenic -27312 ENSMUSG00000106000.1 ENSMUSG00000106000 ENSMUST00000197066 Gm16508 lincRNA Interval_100829 chr2 172765335 172766665 + 0 NA Intergenic Intergenic 98341 ENSMUSG00000093160.1 ENSMUSG00000093160 ENSMUST00000175419 Gm22773 miRNA Interval_162264 chr8 126522665 126523233 + 0 NA Intergenic Intergenic -44021 ENSMUSG00000097060.1 ENSMUSG00000097060 ENSMUST00000181773 Gm26759 antisense Interval_91009 chr2 34164342 34164768 + 0 NA Intergenic Intergenic -53111 ENSMUSG00000103413.1 ENSMUSG00000103413 ENSMUST00000147871 Gm38389 lincRNA Interval_55888 chr14 101798787 101799056 + 0 NA intron (ENSMUSG00000033060.16, intron 2 of 30) protein_coding-intron (ENSMUSG00000033060.16, intron 2 of 30) -41586 ENSMUSG00000033060.16 ENSMUSG00000033060 ENSMUST00000160038 Lmo7 protein_coding Interval_110995 chr4 11088529 11089692 + 0 NA Intergenic Intergenic -12927 ENSMUSG00000050323.14 ENSMUSG00000050323 ENSMUST00000141019 Ndufaf6 protein_coding Interval_28657 chr11 77597962 77598226 + 0 NA intron (ENSMUSG00000017291.13, intron 1 of 19) protein_coding-intron (ENSMUSG00000017291.13, intron 1 of 19) 9721 ENSMUSG00000017291.13 ENSMUSG00000017291 ENSMUST00000058496 Taok1 protein_coding Interval_46631 chr13 67779181 67780405 + 0 NA promoter-TSS (ENSMUSG00000090659.9) protein_coding-promoter-TSS (ENSMUSG00000090659.9) 77 ENSMUSG00000090659.9 ENSMUSG00000090659 ENSMUST00000180507 Zfp493 protein_coding Interval_139827 chr6 109398751 109398965 + 0 NA Intergenic Intergenic -11936 ENSMUSG00000107404.1 ENSMUSG00000107404 ENSMUST00000203068 Gm44125 processed_pseudogene Interval_93779 chr2 76817780 76818097 + 0 NA intron (ENSMUSG00000051747.15, intron 16 of 21) protein_coding-intron (ENSMUSG00000051747.15, intron 47 of 190) 18876 ENSMUSG00000051747.15 ENSMUSG00000051747 ENSMUST00000147048 Ttn protein_coding Interval_28071 chr11 72619303 72619751 + 0 NA intron (ENSMUSG00000020794.13, intron 1 of 4) protein_coding-intron (ENSMUSG00000020794.13, intron 1 of 5) -3377 ENSMUSG00000064567.1 ENSMUSG00000064567 ENSMUST00000082633 Gm24143 snoRNA Interval_162759 chr9 8596656 8596928 + 0 NA intron (ENSMUSG00000031997.9, intron 1 of 2) protein_coding-intron (ENSMUSG00000031997.9, intron 1 of 12) 52596 ENSMUSG00000031997.9 ENSMUSG00000031997 ENSMUST00000214596 Trpc6 protein_coding Interval_8228 chr1 136605352 136605583 + 0 NA promoter-TSS (ENSMUSG00000104366.1) lincRNA-promoter-TSS (ENSMUSG00000104366.1) 1 ENSMUSG00000104366.1 ENSMUSG00000104366 ENSMUST00000193674 4933409D19Rik lincRNA Interval_144018 chr7 19002926 19004928 + 0 NA promoter-TSS (ENSMUSG00000044030.4) protein_coding-promoter-TSS (ENSMUSG00000044030.4) -117 ENSMUSG00000044030.4 ENSMUSG00000044030 ENSMUST00000053713 Irf2bp1 protein_coding Interval_22157 chr11 6694308 6694704 + 0 NA Intergenic Intergenic 8682 ENSMUSG00000083075.1 ENSMUSG00000083075 ENSMUST00000121445 Gm11980 processed_pseudogene Interval_41975 chr13 5826159 5826555 + 0 NA Intergenic Intergenic -4499 ENSMUSG00000080562.2 ENSMUSG00000080562 ENSMUST00000116912 Gm26043 miRNA Interval_49623 chr13 113605815 113608453 + 0 NA intron (ENSMUSG00000042364.11, intron 1 of 1) protein_coding-intron (ENSMUSG00000042364.11, intron 1 of 1) 6880 ENSMUSG00000042364.11 ENSMUSG00000042364 ENSMUST00000224883 Snx18 protein_coding Interval_46947 chr13 73646190 73647369 + 0 NA exon (ENSMUSG00000021611.9, exon 13 of 16) protein_coding-exon (ENSMUSG00000021611.9, exon 13 of 16) -1406 ENSMUSG00000021611.9 ENSMUSG00000021611 ENSMUST00000223325 Tert protein_coding Interval_61465 chr15 81790158 81790376 + 0 NA intron (ENSMUSG00000022390.11, intron 17 of 22) protein_coding-intron (ENSMUSG00000022390.11, intron 17 of 22) 12346 ENSMUSG00000097613.1 ENSMUSG00000097613 ENSMUST00000181220 Gm17597 antisense Interval_130696 chr5 129854601 129855851 + 0 NA TTS (ENSMUSG00000025538.15) protein_coding-TTS (ENSMUSG00000025538.15) 8215 ENSMUSG00000025538.15 ENSMUSG00000025538 ENSMUST00000122826 Sumf2 protein_coding Interval_94393 chr2 90715124 90716177 + 0 NA intron (ENSMUSG00000051329.13, intron 24 of 36) protein_coding-intron (ENSMUSG00000051329.13, intron 24 of 36) -29720 ENSMUSG00000008200.15 ENSMUSG00000008200 ENSMUST00000123955 Fnbp4 protein_coding Interval_168341 chr9 78936312 78936505 + 0 NA TTS (ENSMUSG00000111081.1) processed_pseudogene-TTS (ENSMUSG00000111081.1) 375 ENSMUSG00000111081.1 ENSMUSG00000111081 ENSMUST00000216958 Gm47498 processed_pseudogene Interval_130233 chr5 125118382 125119237 + 0 NA intron (ENSMUSG00000029478.16, intron 3 of 47) protein_coding-intron (ENSMUSG00000029478.16, intron 2 of 45) 31968 ENSMUSG00000106663.1 ENSMUSG00000106663 ENSMUST00000198978 Gm42839 antisense Interval_145355 chr7 34182968 34184109 + 0 NA TTS (ENSMUSG00000002635.11) protein_coding-TTS (ENSMUSG00000002635.11) 6780 ENSMUSG00000081161.1 ENSMUSG00000081161 ENSMUST00000121425 Gm12783 unprocessed_pseudogene Interval_6228 chr1 103056008 103056531 + 0 NA Intergenic Intergenic -102721 ENSMUSG00000087908.1 ENSMUSG00000087908 ENSMUST00000157283 Gm22034 snoRNA Interval_162680 chr9 7778772 7779320 + 0 NA intron (ENSMUSG00000050912.15, intron 2 of 4) protein_coding-intron (ENSMUSG00000050912.15, intron 2 of 4) -5344 ENSMUSG00000093615.1 ENSMUSG00000093615 ENSMUST00000175907 Mir5618 miRNA Interval_37239 chr12 62418118 62418550 + 0 NA Intergenic Intergenic -42963 ENSMUSG00000113523.1 ENSMUSG00000113523 ENSMUST00000222526 Gm48366 processed_pseudogene Interval_67740 chr16 56735499 56735796 + 0 NA intron (ENSMUSG00000022755.4, intron 13 of 15) protein_coding-intron (ENSMUSG00000022755.4, intron 13 of 15) -18465 ENSMUSG00000022757.19 ENSMUSG00000022757 ENSMUST00000141404 Tfg protein_coding Interval_73022 chr17 34176727 34177005 + 0 NA Intergenic Intergenic 10499 ENSMUSG00000096727.3 ENSMUSG00000096727 ENSMUST00000173831 Psmb9 protein_coding Interval_43407 chr13 30198171 30198358 + 0 NA intron (ENSMUSG00000038732.15, intron 3 of 6) protein_coding-intron (ENSMUSG00000038732.15, intron 3 of 12) 16548 ENSMUSG00000082648.1 ENSMUSG00000082648 ENSMUST00000119279 Gm11366 processed_pseudogene Interval_98977 chr2 156439711 156440685 + 0 NA intron (ENSMUSG00000027624.20, intron 2 of 6) protein_coding-intron (ENSMUSG00000027624.20, intron 1 of 21) 7410 ENSMUSG00000086872.1 ENSMUSG00000086872 ENSMUST00000142310 Gm14225 antisense Interval_5607 chr1 90181557 90181823 + 0 NA Intergenic Intergenic -22316 ENSMUSG00000044337.5 ENSMUSG00000044337 ENSMUST00000159654 Ackr3 protein_coding Interval_60472 chr15 74120337 74121183 + 0 NA Intergenic Intergenic -26427 ENSMUSG00000082585.3 ENSMUSG00000082585 ENSMUST00000120421 Gm15387 processed_pseudogene Interval_97155 chr2 131820011 131821567 + 0 NA exon (ENSMUSG00000086822.2, exon 3 of 3) lincRNA-exon (ENSMUSG00000086822.2, exon 3 of 3) 24806 ENSMUSG00000081422.1 ENSMUSG00000081422 ENSMUST00000119484 Gm14282 transcribed_processed_pseudogene Interval_5891 chr1 93005551 93006002 + 0 NA promoter-TSS (ENSMUSG00000045091.4) protein_coding-promoter-TSS (ENSMUSG00000045091.4) -558 ENSMUSG00000045091.4 ENSMUSG00000045091 ENSMUST00000059676 Aqp12 protein_coding Interval_110279 chr3 155688667 155688897 + 0 NA Intergenic Intergenic 66458 ENSMUSG00000103981.1 ENSMUSG00000103981 ENSMUST00000193016 Gm37449 processed_pseudogene Interval_68385 chr16 75343197 75343841 + 0 NA Intergenic Intergenic 55755 ENSMUSG00000116867.1 ENSMUSG00000116867 ENSMUST00000232003 Gm49677 TEC Interval_124802 chr5 54241437 54241933 + 0 NA Intergenic Intergenic -108306 ENSMUSG00000105912.1 ENSMUSG00000105912 ENSMUST00000197424 Gm10440 lincRNA Interval_53857 chr14 62844236 62844503 + 0 NA intron (ENSMUSG00000014547.10, intron 1 of 3) protein_coding-intron (ENSMUSG00000014547.10, intron 1 of 11) 6648 ENSMUSG00000099245.1 ENSMUSG00000099245 ENSMUST00000184011 Mir8098 miRNA Interval_118485 chr4 131968916 131969118 + 0 NA intron (ENSMUSG00000028906.17, intron 11 of 14) protein_coding-intron (ENSMUSG00000028906.17, intron 11 of 20) 23272 ENSMUSG00000098577.1 ENSMUSG00000098577 ENSMUST00000184484 Gm27445 miRNA Interval_92961 chr2 68981828 68982348 + 0 NA intron (ENSMUSG00000027035.10, intron 1 of 3) protein_coding-intron (ENSMUSG00000027035.10, intron 3 of 9) -7293 ENSMUSG00000104262.1 ENSMUSG00000104262 ENSMUST00000193717 Gm37747 TEC Interval_116425 chr4 111727106 111727841 + 0 NA intron (ENSMUSG00000034401.16, intron 1 of 4) protein_coding-intron (ENSMUSG00000034401.16, intron 1 of 12) 7410 ENSMUSG00000034401.16 ENSMUSG00000034401 ENSMUST00000132802 Spata6 protein_coding Interval_141748 chr6 134199387 134200835 + 0 NA intron (ENSMUSG00000030199.16, intron 2 of 4) protein_coding-intron (ENSMUSG00000030199.16, intron 2 of 7) -28104 ENSMUSG00000091438.1 ENSMUSG00000091438 ENSMUST00000164616 Gm17088 antisense Interval_59069 chr15 42962394 42963160 + 0 NA Intergenic Intergenic 208049 ENSMUSG00000051920.7 ENSMUSG00000051920 ENSMUST00000226402 Rspo2 protein_coding Interval_108459 chr3 127414589 127415611 + 0 NA intron (ENSMUSG00000032826.19, intron 1 of 1) protein_coding-intron (ENSMUSG00000032826.19, intron 1 of 1) -21394 ENSMUSG00000105822.1 ENSMUSG00000105822 ENSMUST00000199858 Gm42969 TEC Interval_131172 chr5 135602833 135603063 + 0 NA Intergenic Intergenic 14351 ENSMUSG00000107029.1 ENSMUSG00000107029 ENSMUST00000201893 Gm43123 TEC Interval_41709 chr12 118078225 118078412 + 0 NA intron (ENSMUSG00000018581.15, intron 30 of 81) protein_coding-intron (ENSMUSG00000018581.15, intron 30 of 81) -18015 ENSMUSG00000018581.15 ENSMUSG00000018581 ENSMUST00000176239 Dnah11 protein_coding Interval_78327 chr18 11990364 11991223 + 0 NA intron (ENSMUSG00000049411.15, intron 14 of 14) protein_coding-intron (ENSMUSG00000049411.15, intron 12 of 12) 77662 ENSMUSG00000117430.1 ENSMUSG00000117430 ENSMUST00000234828 Gm49968 TEC Interval_99038 chr2 156802177 156802753 + 0 NA Intergenic Intergenic -12062 ENSMUSG00000082196.3 ENSMUSG00000082196 ENSMUST00000120090 Gm14231 processed_pseudogene Interval_35876 chr12 31524531 31525064 + 0 NA intron (ENSMUSG00000020651.8, intron 19 of 20) protein_coding-intron (ENSMUSG00000020651.8, intron 19 of 20) 11776 ENSMUSG00000020651.8 ENSMUSG00000020651 ENSMUST00000218992 Slc26a4 protein_coding Interval_27214 chr11 64164877 64165137 + 0 NA intron (ENSMUSG00000087622.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000087622.1, intron 1 of 2) 434 ENSMUSG00000087622.1 ENSMUSG00000087622 ENSMUST00000145095 Gm12290 lincRNA Interval_117868 chr4 126745546 126746422 + 0 NA intron (ENSMUSG00000028833.13, intron 6 of 6) protein_coding-intron (ENSMUSG00000028833.13, intron 6 of 6) 7454 ENSMUSG00000028833.13 ENSMUSG00000028833 ENSMUST00000127079 Ncdn protein_coding Interval_11227 chr1 180301007 180302910 + 0 NA Intergenic Intergenic 26226 ENSMUSG00000055676.4 ENSMUSG00000055676 ENSMUST00000192714 Gm5069 transcribed_processed_pseudogene Interval_82323 chr18 70644071 70645194 + 0 NA Intergenic Intergenic 3405 ENSMUSG00000117810.1 ENSMUSG00000117810 ENSMUST00000236578 Gm8934 processed_pseudogene Interval_47325 chr13 81423726 81425702 + 0 NA intron (ENSMUSG00000069170.14, intron 9 of 27) protein_coding-intron (ENSMUSG00000069170.14, intron 71 of 89) -73088 ENSMUSG00000069170.14 ENSMUSG00000069170 ENSMUST00000132045 Adgrv1 protein_coding Interval_119217 chr4 136270360 136270839 + 0 NA intron (ENSMUSG00000001604.14, intron 8 of 8) protein_coding-intron (ENSMUSG00000001604.14, intron 8 of 10) -14084 ENSMUSG00000051351.14 ENSMUSG00000051351 ENSMUST00000130658 Zfp46 protein_coding Interval_124941 chr5 61232281 61232964 + 0 NA Intergenic Intergenic 106111 ENSMUSG00000106370.2 ENSMUSG00000106370 ENSMUST00000198954 Gm43382 processed_pseudogene Interval_45657 chr13 56609014 56609823 + 0 NA promoter-TSS (ENSMUSG00000035493.10) protein_coding-promoter-TSS (ENSMUSG00000035493.10) 13881 ENSMUSG00000114604.1 ENSMUSG00000114604 ENSMUST00000224345 2010203P06Rik lincRNA Interval_160594 chr8 110921348 110922074 + 0 NA intron (ENSMUSG00000031749.12, intron 2 of 2) protein_coding-intron (ENSMUSG00000031749.12, intron 1 of 6) -1405 ENSMUSG00000065100.1 ENSMUSG00000065100 ENSMUST00000083166 Gm26132 snoRNA Interval_171050 chr9 113990554 113991630 + 0 NA intron (ENSMUSG00000032507.15, intron 6 of 15) protein_coding-intron (ENSMUSG00000032507.15, intron 5 of 14) -20094 ENSMUSG00000111793.1 ENSMUSG00000111793 ENSMUST00000214534 Gm47950 antisense Interval_4332 chr1 72778509 72779538 + 0 NA Intergenic Intergenic 67709 ENSMUSG00000046330.10 ENSMUSG00000046330 ENSMUST00000211963 Rpl37a protein_coding Interval_79828 chr18 35424426 35425273 + 0 NA intron (ENSMUSG00000024357.10, intron 1 of 8) protein_coding-intron (ENSMUSG00000024357.10, intron 2 of 9) -64255 ENSMUSG00000117731.1 ENSMUSG00000117731 ENSMUST00000237123 Gm50145 antisense Interval_84440 chr19 10925750 10926167 + 0 NA Intergenic Intergenic -9660 ENSMUSG00000024734.8 ENSMUSG00000024734 ENSMUST00000025641 Zp1 protein_coding Interval_40861 chr12 108930747 108931894 + 0 NA intron (ENSMUSG00000040877.16, intron 1 of 2) protein_coding-intron (ENSMUSG00000040877.16, intron 3 of 7) 18588 ENSMUSG00000040877.16 ENSMUSG00000040877 ENSMUST00000221510 Wdr25 protein_coding Interval_116085 chr4 107526450 107527055 + 0 NA intron (ENSMUSG00000034762.9, intron 1 of 9) protein_coding-intron (ENSMUSG00000034762.9, intron 2 of 10) -54451 ENSMUSG00000034762.9 ENSMUSG00000034762 ENSMUST00000125573 Glis1 protein_coding Interval_43379 chr13 29907396 29909413 + 0 NA exon (ENSMUSG00000016477.18, exon 7 of 7) protein_coding-exon (ENSMUSG00000016477.18, exon 7 of 7) -31879 ENSMUSG00000086893.1 ENSMUSG00000086893 ENSMUST00000144277 Gm11365 antisense Interval_52291 chr14 43983837 43984151 + 0 NA intron (ENSMUSG00000115724.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000115724.1, intron 1 of 1) 3472 ENSMUSG00000115724.1 ENSMUSG00000115724 ENSMUST00000227597 Gm49087 lincRNA Interval_43748 chr13 35980361 35980722 + 0 NA intron (ENSMUSG00000046573.7, intron 2 of 2) protein_coding-intron (ENSMUSG00000046573.7, intron 2 of 2) 10979 ENSMUSG00000114251.1 ENSMUSG00000114251 ENSMUST00000224867 Tmed10-ps processed_pseudogene Interval_60276 chr15 72030003 72030321 + 0 NA intron (ENSMUSG00000079022.10, intron 1 of 63) protein_coding-intron (ENSMUSG00000079022.10, intron 1 of 63) -75763 ENSMUSG00000079022.10 ENSMUSG00000079022 ENSMUST00000162081 Col22a1 protein_coding Interval_135066 chr6 35133041 35134589 + 0 NA promoter-TSS (ENSMUSG00000038784.13) protein_coding-promoter-TSS (ENSMUSG00000038784.13) -128 ENSMUSG00000038784.13 ENSMUSG00000038784 ENSMUST00000202666 Cnot4 protein_coding Interval_47350 chr13 81744550 81744958 + 0 NA intron (ENSMUSG00000051098.6, intron 1 of 1) protein_coding-intron (ENSMUSG00000051098.6, intron 1 of 1) -19726 ENSMUSG00000114905.1 ENSMUSG00000114905 ENSMUST00000224298 Gm48113 processed_pseudogene Interval_96831 chr2 128686886 128687889 + 0 NA promoter-TSS (ENSMUSG00000014355.10) protein_coding-promoter-TSS (ENSMUSG00000014355.10) -58748 ENSMUSG00000014355.10 ENSMUSG00000014355 ENSMUST00000110332 Anapc1 protein_coding Interval_109112 chr3 135875441 135875630 + 0 NA exon (ENSMUSG00000105681.1, exon 1 of 1) TEC-exon (ENSMUSG00000105681.1, exon 1 of 1) 3422 ENSMUSG00000105681.1 ENSMUSG00000105681 ENSMUST00000200108 Gm43428 TEC Interval_124764 chr5 53725004 53725449 + 0 NA Intergenic Intergenic -17666 ENSMUSG00000029193.7 ENSMUSG00000029193 ENSMUST00000202946 Cckar protein_coding Interval_171023 chr9 113781582 113781877 + 0 NA intron (ENSMUSG00000033392.16, intron 6 of 10) protein_coding-intron (ENSMUSG00000033392.16, intron 6 of 15) -5431 ENSMUSG00000087992.1 ENSMUSG00000087992 ENSMUST00000157367 Gm25059 snoRNA Interval_2185 chr1 36910015 36910251 + 0 NA intron (ENSMUSG00000026116.11, intron 1 of 5) protein_coding-intron (ENSMUSG00000026116.11, intron 1 of 40) 6406 ENSMUSG00000102930.1 ENSMUSG00000102930 ENSMUST00000194317 Gm38115 sense_intronic Interval_62446 chr15 93029447 93029880 + 0 NA Intergenic Intergenic 27331 ENSMUSG00000109770.1 ENSMUSG00000109770 ENSMUST00000209724 Gm30085 lincRNA Interval_99785 chr2 164890200 164892583 + 0 NA TTS (ENSMUSG00000039834.17) protein_coding-TTS (ENSMUSG00000039834.17) 12087 ENSMUSG00000039849.6 ENSMUSG00000039849 ENSMUST00000130213 Pcif1 protein_coding Interval_1882 chr1 34270764 34271339 + 0 NA promoter-TSS (ENSMUSG00000103001.1) TEC-promoter-TSS (ENSMUSG00000103001.1) 77 ENSMUSG00000103001.1 ENSMUSG00000103001 ENSMUST00000194920 A930005N03Rik TEC Interval_99972 chr2 166184542 166184804 + 0 NA Intergenic Intergenic -5024 ENSMUSG00000088926.1 ENSMUSG00000088926 ENSMUST00000158301 Gm22687 rRNA Interval_121404 chr4 155569958 155571388 + 0 NA intron (ENSMUSG00000029063.16, intron 1 of 3) protein_coding-intron (ENSMUSG00000029063.16, intron 1 of 11) -16104 ENSMUSG00000029063.16 ENSMUSG00000029063 ENSMUST00000152297 Nadk protein_coding Interval_117544 chr4 124592470 124592760 + 0 NA intron (ENSMUSG00000098760.1, intron 1 of 1) antisense-intron (ENSMUSG00000098760.1, intron 1 of 1) 23425 ENSMUSG00000073759.6 ENSMUSG00000073759 ENSMUST00000133499 4933407E24Rik lincRNA Interval_172962 chrX 57966188 57966439 + 0 NA Intergenic Intergenic -23160 ENSMUSG00000093905.1 ENSMUSG00000093905 ENSMUST00000082977 Gm25023 snRNA Interval_112229 chr4 37008783 37009241 + 0 NA Intergenic Intergenic 56046 ENSMUSG00000084898.1 ENSMUSG00000084898 ENSMUST00000144029 Gm12371 lincRNA Interval_74850 chr17 56865965 56866342 + 0 NA intron (ENSMUSG00000024207.8, intron 3 of 14) protein_coding-intron (ENSMUSG00000024207.8, intron 3 of 14) 8294 ENSMUSG00000024207.8 ENSMUSG00000024207 ENSMUST00000043062 Acsbg2 protein_coding Interval_172007 chr9 123449913 123450610 + 0 NA intron (ENSMUSG00000035202.8, intron 14 of 20) protein_coding-intron (ENSMUSG00000035202.8, intron 14 of 20) -30349 ENSMUSG00000025239.3 ENSMUSG00000025239 ENSMUST00000214309 Limd1 protein_coding Interval_16086 chr10 60632245 60632457 + 0 NA intron (ENSMUSG00000012819.15, intron 2 of 2) protein_coding-intron (ENSMUSG00000012819.15, intron 2 of 66) 120432 ENSMUSG00000020100.15 ENSMUSG00000020100 ENSMUST00000144989 Slc29a3 protein_coding Interval_2521 chr1 39925063 39925264 + 0 NA intron (ENSMUSG00000026074.15, intron 2 of 31) protein_coding-intron (ENSMUSG00000026074.15, intron 2 of 30) 23984 ENSMUSG00000026074.15 ENSMUSG00000026074 ENSMUST00000191657 Map4k4 protein_coding Interval_125224 chr5 65491845 65493489 + 0 NA promoter-TSS (ENSMUSG00000107195.1) TEC-promoter-TSS (ENSMUSG00000107195.1) 166 ENSMUSG00000105835.1 ENSMUSG00000105835 ENSMUST00000196121 Gm43552 protein_coding Interval_76241 chr17 78376836 78377493 + 0 NA TTS (ENSMUSG00000056121.16) protein_coding-TTS (ENSMUSG00000056121.16) 25371 ENSMUSG00000056121.16 ENSMUSG00000056121 ENSMUST00000234900 Fez2 protein_coding Interval_84739 chr19 16050351 16050879 + 0 NA Intergenic Intergenic 25164 ENSMUSG00000117711.1 ENSMUSG00000117711 ENSMUST00000235413 Rpl37-ps1 processed_pseudogene Interval_157033 chr8 64666107 64667012 + 0 NA intron (ENSMUSG00000037852.8, intron 1 of 8) protein_coding-intron (ENSMUSG00000037852.8, intron 1 of 8) 44517 ENSMUSG00000110368.1 ENSMUSG00000110368 ENSMUST00000210776 Gm45518 lincRNA Interval_133837 chr6 13096748 13097730 + 0 NA Intergenic Intergenic -14060 ENSMUSG00000077643.1 ENSMUSG00000077643 ENSMUST00000104455 Gm24985 snoRNA Interval_32596 chr11 108971612 108971833 + 0 NA Intergenic Intergenic -29707 ENSMUSG00000086268.1 ENSMUSG00000086268 ENSMUST00000143435 Gm11670 antisense Interval_13033 chr10 9786516 9787239 + 0 NA intron (ENSMUSG00000019790.17, intron 19 of 27) protein_coding-intron (ENSMUSG00000019790.17, intron 19 of 27) 32708 ENSMUSG00000019790.17 ENSMUSG00000019790 ENSMUST00000219200 Stxbp5 protein_coding Interval_118284 chr4 130036146 130037362 + 0 NA intron (ENSMUSG00000085517.7, intron 2 of 3) antisense-intron (ENSMUSG00000085517.7, intron 2 of 6) -8250 ENSMUSG00000085517.7 ENSMUSG00000085517 ENSMUST00000156271 Gm12963 antisense Interval_164473 chr9 37300452 37300696 + 0 NA intron (ENSMUSG00000034303.8, intron 12 of 15) protein_coding-intron (ENSMUSG00000034303.8, intron 12 of 15) -1213 ENSMUSG00000111421.1 ENSMUSG00000111421 ENSMUST00000214258 Gm47643 TEC Interval_56756 chr14 121871253 121872069 + 0 NA Intergenic Intergenic 6843 ENSMUSG00000102112.1 ENSMUSG00000102112 ENSMUST00000185880 1810041H14Rik antisense Interval_44195 chr13 41827954 41829319 + 0 NA promoter-TSS (ENSMUSG00000058022.14) protein_coding-promoter-TSS (ENSMUSG00000058022.14) -246 ENSMUSG00000058022.14 ENSMUSG00000058022 ENSMUST00000221691 Adtrp protein_coding Interval_24359 chr11 32659308 32659508 + 0 NA intron (ENSMUSG00000020271.17, intron 2 of 4) protein_coding-intron (ENSMUSG00000020271.17, intron 1 of 13) 16504 ENSMUSG00000020271.17 ENSMUSG00000020271 ENSMUST00000143290 Fbxw11 protein_coding Interval_81773 chr18 64544728 64545298 + 0 NA intron (ENSMUSG00000039529.9, intron 5 of 5) protein_coding-intron (ENSMUSG00000039529.9, intron 22 of 27) -33136 ENSMUSG00000024587.10 ENSMUSG00000024587 ENSMUST00000237027 Nars protein_coding Interval_161368 chr8 119991963 119993181 + 0 NA promoter-TSS (ENSMUSG00000031825.16) protein_coding-promoter-TSS (ENSMUSG00000031825.16) -20636 ENSMUSG00000031825.16 ENSMUSG00000031825 ENSMUST00000144801 Crispld2 protein_coding Interval_164024 chr9 31004155 31004532 + 0 NA intron (ENSMUSG00000111673.1, intron 1 of 2) antisense-intron (ENSMUSG00000111673.1, intron 1 of 2) 5720 ENSMUSG00000111673.1 ENSMUSG00000111673 ENSMUST00000216803 Gm29724 antisense Interval_75081 chr17 63083082 63083342 + 0 NA intron (ENSMUSG00000023965.13, intron 4 of 5) protein_coding-intron (ENSMUSG00000023965.13, intron 7 of 8) 13788 ENSMUSG00000089586.1 ENSMUSG00000089586 ENSMUST00000158961 Gm25348 rRNA Interval_151013 chr7 117708804 117709155 + 0 NA Intergenic Intergenic -67815 ENSMUSG00000088116.1 ENSMUSG00000088116 ENSMUST00000157491 Gm24063 miRNA Interval_151173 chr7 118972429 118972685 + 0 NA TTS (ENSMUSG00000073856.11) protein_coding-TTS (ENSMUSG00000073856.11) -2871 ENSMUSG00000109517.1 ENSMUSG00000109517 ENSMUST00000208287 Gm44763 antisense Interval_58875 chr15 39556929 39557144 + 0 NA intron (ENSMUSG00000037386.16, intron 15 of 23) protein_coding-intron (ENSMUSG00000037386.16, intron 19 of 26) 119798 ENSMUSG00000037386.16 ENSMUSG00000037386 ENSMUST00000226410 Rims2 protein_coding Interval_130414 chr5 127453571 127454567 + 0 NA intron (ENSMUSG00000034324.16, intron 2 of 8) protein_coding-intron (ENSMUSG00000034324.16, intron 2 of 8) -99185 ENSMUSG00000034324.16 ENSMUSG00000034324 ENSMUST00000145748 Tmem132c protein_coding Interval_34200 chr11 121248320 121249444 + 0 NA intron (ENSMUSG00000000056.7, intron 7 of 10) protein_coding-intron (ENSMUSG00000000056.7, intron 7 of 10) 4344 ENSMUSG00000000056.7 ENSMUSG00000000056 ENSMUST00000151088 Narf protein_coding Interval_163849 chr9 27125329 27125803 + 0 NA intron (ENSMUSG00000031990.15, intron 1 of 2) protein_coding-intron (ENSMUSG00000031990.15, intron 1 of 8) 984 ENSMUSG00000031990.15 ENSMUSG00000031990 ENSMUST00000213682 Jam3 protein_coding Interval_5296 chr1 87313390 87314615 + 0 NA Intergenic Intergenic 4776 ENSMUSG00000026255.15 ENSMUSG00000026255 ENSMUST00000150831 Efhd1 protein_coding Interval_108961 chr3 133608810 133609448 + 0 NA Intergenic Intergenic -20592 ENSMUSG00000077336.1 ENSMUSG00000077336 ENSMUST00000104148 Gm23011 snoRNA Interval_121038 chr4 152359681 152361624 + 0 NA exon (ENSMUSG00000005045.16, exon 8 of 41) protein_coding-exon (ENSMUSG00000005045.16, exon 8 of 41) -7011 ENSMUSG00000085179.1 ENSMUSG00000085179 ENSMUST00000145163 Gm13645 processed_transcript Interval_65175 chr16 20359659 20362852 + 0 NA intron (ENSMUSG00000022822.16, intron 2 of 3) protein_coding-intron (ENSMUSG00000022822.16, intron 24 of 29) 37693 ENSMUSG00000022822.16 ENSMUSG00000022822 ENSMUST00000231522 Abcc5 protein_coding Interval_23061 chr11 19542634 19543099 + 0 NA Intergenic Intergenic 85195 ENSMUSG00000086911.1 ENSMUSG00000086911 ENSMUST00000146531 Gm12027 lincRNA Interval_58007 chr15 25983739 25985290 + 0 NA exon (ENSMUSG00000052253.6, exon 1 of 6) protein_coding-exon (ENSMUSG00000052253.6, exon 1 of 6) 148 ENSMUSG00000052253.6 ENSMUSG00000052253 ENSMUST00000227093 Zfp622 protein_coding Interval_154563 chr8 19535021 19536235 + 0 NA promoter-TSS (ENSMUSG00000098476.1) miRNA-promoter-TSS (ENSMUSG00000098476.1) 174 ENSMUSG00000083218.2 ENSMUSG00000083218 ENSMUST00000118143 Gm16425 processed_pseudogene Interval_167067 chr9 65011028 65011738 + 0 NA intron (ENSMUSG00000033629.6, intron 1 of 10) protein_coding-intron (ENSMUSG00000033629.6, intron 1 of 10) 10310 ENSMUSG00000033629.6 ENSMUSG00000033629 ENSMUST00000036615 Hacd3 protein_coding Interval_10924 chr1 177041279 177042150 + 0 NA intron (ENSMUSG00000019699.16, intron 11 of 12) protein_coding-intron (ENSMUSG00000019699.16, intron 11 of 12) -4778 ENSMUSG00000104391.1 ENSMUSG00000104391 ENSMUST00000192402 Gm37960 TEC Interval_11338 chr1 181038514 181040225 + 0 NA Intergenic Intergenic -11868 ENSMUSG00000038768.8 ENSMUSG00000038768 ENSMUST00000036819 9130409I23Rik protein_coding Interval_98733 chr2 154568947 154570578 + 0 NA promoter-TSS (ENSMUSG00000027490.17) protein_coding-promoter-TSS (ENSMUSG00000027490.17) 130 ENSMUSG00000027490.17 ENSMUSG00000027490 ENSMUST00000000894 E2f1 protein_coding Interval_17215 chr10 75036880 75037573 + 0 NA promoter-TSS (ENSMUSG00000020175.15) protein_coding-promoter-TSS (ENSMUSG00000020175.15) 137 ENSMUSG00000020175.15 ENSMUSG00000020175 ENSMUST00000151432 Rab36 protein_coding Interval_166336 chr9 58426432 58426889 + 0 NA Intergenic Intergenic -28462 ENSMUSG00000097651.2 ENSMUSG00000097651 ENSMUST00000181967 4930461G14Rik lincRNA Interval_7229 chr1 128045023 128045273 + 0 NA intron (ENSMUSG00000036086.16, intron 3 of 20) protein_coding-intron (ENSMUSG00000036086.16, intron 3 of 20) 6579 ENSMUSG00000058603.10 ENSMUSG00000058603 ENSMUST00000121497 Rpl28-ps1 processed_pseudogene Interval_159034 chr8 88983166 88983584 + 0 NA Intergenic Intergenic -41360 ENSMUSG00000099078.1 ENSMUSG00000099078 ENSMUST00000183771 Mir8110 miRNA Interval_113703 chr4 57750036 57750508 + 0 NA intron (ENSMUSG00000038729.24, intron 1 of 4) protein_coding-intron (ENSMUSG00000038729.24, intron 1 of 2) -12335 ENSMUSG00000089286.1 ENSMUSG00000089286 ENSMUST00000158661 Gm24277 snRNA Interval_163948 chr9 29500784 29502263 + 0 NA intron (ENSMUSG00000059974.10, intron 1 of 2) protein_coding-intron (ENSMUSG00000059974.10, intron 1 of 7) 90987 ENSMUSG00000085638.1 ENSMUSG00000085638 ENSMUST00000141752 Gm15521 sense_intronic Interval_124871 chr5 58039683 58039998 + 0 NA intron (ENSMUSG00000029108.14, intron 3 of 3) protein_coding-intron (ENSMUSG00000029108.14, intron 2 of 2) -7491 ENSMUSG00000106646.1 ENSMUSG00000106646 ENSMUST00000197556 Gm42483 TEC Interval_133617 chr6 7692640 7694825 + 0 NA promoter-TSS (ENSMUSG00000029752.12) protein_coding-promoter-TSS (ENSMUSG00000029752.12) -860 ENSMUSG00000029752.12 ENSMUSG00000029752 ENSMUST00000148349 Asns protein_coding Interval_54468 chr14 70019806 70021799 + 0 NA intron (ENSMUSG00000114446.1, intron 2 of 2) protein_coding-intron (ENSMUSG00000022085.4, intron 4 of 6) 36565 ENSMUSG00000114446.1 ENSMUSG00000114446 ENSMUST00000224990 Gm33524 antisense Interval_150928 chr7 116382488 116382758 + 0 NA intron (ENSMUSG00000030660.9, intron 9 of 33) protein_coding-intron (ENSMUSG00000030660.9, intron 8 of 32) 17094 ENSMUSG00000108500.1 ENSMUSG00000108500 ENSMUST00000206710 Gm45033 TEC Interval_52829 chr14 50924249 50925722 + 0 NA promoter-TSS (ENSMUSG00000006289.14) protein_coding-promoter-TSS (ENSMUSG00000006289.14) 7 ENSMUSG00000035960.14 ENSMUSG00000035960 ENSMUST00000128395 Apex1 protein_coding Interval_174542 chrX 157486887 157487579 + 0 NA intron (ENSMUSG00000071708.11, intron 1 of 9) protein_coding-intron (ENSMUSG00000071708.11, intron 1 of 10) -26372 ENSMUSG00000071708.11 ENSMUSG00000071708 ENSMUST00000123770 Sms protein_coding Interval_127266 chr5 101993118 101993500 + 0 NA intron (ENSMUSG00000043940.15, intron 3 of 15) protein_coding-intron (ENSMUSG00000043940.15, intron 3 of 66) -11751 ENSMUSG00000043940.15 ENSMUSG00000043940 ENSMUST00000172512 Wdfy3 protein_coding Interval_50521 chr14 14610103 14610274 + 0 NA Intergenic Intergenic 20242 ENSMUSG00000114574.1 ENSMUSG00000114574 ENSMUST00000223638 Gm47685 processed_pseudogene Interval_52047 chr14 34838996 34840225 + 0 NA intron (ENSMUSG00000041078.7, intron 2 of 15) protein_coding-intron (ENSMUSG00000041078.7, intron 2 of 15) -54999 ENSMUSG00000065481.1 ENSMUSG00000065481 ENSMUST00000083547 Mir346 miRNA Interval_133102 chr5 149818711 149819258 + 0 NA Intergenic Intergenic -7233 ENSMUSG00000106740.1 ENSMUSG00000106740 ENSMUST00000202876 Gm21221 lincRNA Interval_55359 chr14 84690736 84691473 + 0 NA Intergenic Intergenic 67979 ENSMUSG00000115743.1 ENSMUSG00000115743 ENSMUST00000227353 Gm7004 processed_pseudogene Interval_153198 chr7 142349224 142349476 + 0 NA intron (ENSMUSG00000045777.14, intron 2 of 2) protein_coding-intron (ENSMUSG00000045777.14, intron 3 of 3) 22919 ENSMUSG00000045777.14 ENSMUSG00000045777 ENSMUST00000123543 Ifitm10 protein_coding Interval_123086 chr5 29558945 29559545 + 0 NA Intergenic Intergenic 21092 ENSMUSG00000078182.4 ENSMUSG00000078182 ENSMUST00000075518 Gm6083 processed_pseudogene Interval_111127 chr4 12482496 12482970 + 0 NA Intergenic Intergenic -114655 ENSMUSG00000104211.1 ENSMUSG00000104211 ENSMUST00000194728 Gm37985 TEC Interval_66078 chr16 31459812 31460503 + 0 NA Intergenic Intergenic -9769 ENSMUSG00000116572.1 ENSMUSG00000116572 ENSMUST00000232608 Gm49695 lincRNA Interval_143607 chr7 13103054 13104462 + 0 NA promoter-TSS (ENSMUSG00000070816.3) protein_coding-promoter-TSS (ENSMUSG00000070816.3) -8585 ENSMUSG00000070817.3 ENSMUSG00000070817 ENSMUST00000094829 Vmn1r85 protein_coding Interval_121028 chr4 152315420 152316132 + 0 NA exon (ENSMUSG00000058498.12, exon 4 of 17) protein_coding-exon (ENSMUSG00000058498.12, exon 4 of 17) 2682 ENSMUSG00000058498.12 ENSMUSG00000058498 ENSMUST00000146496 Rnf207 protein_coding Interval_60826 chr15 76998715 76999657 + 0 NA Intergenic Intergenic 11162 ENSMUSG00000116339.1 ENSMUSG00000116339 ENSMUST00000230431 Gm35933 lincRNA Interval_40390 chr12 104592630 104592964 + 0 NA Intergenic Intergenic 72829 ENSMUSG00000112954.1 ENSMUSG00000112954 ENSMUST00000222329 Gm49732 lincRNA Interval_43948 chr13 38241690 38242036 + 0 NA Intergenic Intergenic 25927 ENSMUSG00000021431.15 ENSMUSG00000021431 ENSMUST00000223893 Snrnp48 protein_coding Interval_99364 chr2 160256068 160256681 + 0 NA Intergenic Intergenic 77788 ENSMUSG00000074623.4 ENSMUSG00000074623 ENSMUST00000099127 Gm826 protein_coding Interval_85301 chr19 24513381 24513950 + 0 NA intron (ENSMUSG00000024867.14, intron 1 of 3) protein_coding-intron (ENSMUSG00000024867.14, intron 1 of 14) -36309 ENSMUSG00000074922.1 ENSMUSG00000074922 ENSMUST00000099556 Fam122a protein_coding Interval_146868 chr7 54092363 54092728 + 0 NA Intergenic Intergenic -83965 ENSMUSG00000099089.1 ENSMUSG00000099089 ENSMUST00000183968 Gm27921 miRNA Interval_59036 chr15 41917178 41917628 + 0 NA Intergenic Intergenic -4673 ENSMUSG00000116083.1 ENSMUSG00000116083 ENSMUST00000229137 Gm5469 processed_pseudogene Interval_155963 chr8 41306460 41306849 + 0 NA intron (ENSMUSG00000031592.10, intron 24 of 38) protein_coding-intron (ENSMUSG00000031592.10, intron 23 of 37) 66876 ENSMUSG00000031592.10 ENSMUSG00000031592 ENSMUST00000211247 Pcm1 protein_coding Interval_44723 chr13 47836232 47836706 + 0 NA Intergenic Intergenic -73966 ENSMUSG00000114959.1 ENSMUSG00000114959 ENSMUST00000223677 G630093K05Rik lincRNA Interval_170231 chr9 106338308 106339622 + 0 NA intron (ENSMUSG00000023345.17, intron 10 of 10) protein_coding-intron (ENSMUSG00000023345.17, intron 10 of 10) -3132 ENSMUSG00000099879.1 ENSMUSG00000099879 ENSMUST00000185808 Gm29123 antisense Interval_160707 chr8 111733465 111734206 + 0 NA intron (ENSMUSG00000031955.10, intron 1 of 6) protein_coding-intron (ENSMUSG00000031955.10, intron 1 of 6) -1699 ENSMUSG00000031955.10 ENSMUSG00000031955 ENSMUST00000212147 Bcar1 protein_coding Interval_154713 chr8 22788519 22789627 + 0 NA exon (ENSMUSG00000031539.6, exon 9 of 9) protein_coding-exon (ENSMUSG00000031539.6, exon 9 of 9) 16549 ENSMUSG00000031539.6 ENSMUSG00000031539 ENSMUST00000210476 Ap3m2 protein_coding Interval_40188 chr12 102412125 102413753 + 0 NA intron (ENSMUSG00000021190.14, intron 2 of 12) protein_coding-intron (ENSMUSG00000021190.14, intron 3 of 13) -6793 ENSMUSG00000021190.14 ENSMUSG00000021190 ENSMUST00000146499 Lgmn protein_coding Interval_77290 chr17 87825430 87827102 + 0 NA exon (ENSMUSG00000117466.1, exon 1 of 2) lincRNA-exon (ENSMUSG00000117466.1, exon 1 of 2) 1193 ENSMUSG00000117466.1 ENSMUSG00000117466 ENSMUST00000234350 Gm50039 lincRNA Interval_51377 chr14 27095787 27097189 + 0 NA intron (ENSMUSG00000040717.6, intron 13 of 13) protein_coding-intron (ENSMUSG00000040717.6, intron 11 of 12) -18411 ENSMUSG00000021895.10 ENSMUSG00000021895 ENSMUST00000225494 Arhgef3 protein_coding Interval_148808 chr7 88277446 88278539 + 0 NA promoter-TSS (ENSMUSG00000030560.17) protein_coding-promoter-TSS (ENSMUSG00000030560.17) -18860 ENSMUSG00000030560.17 ENSMUSG00000030560 ENSMUST00000152834 Ctsc protein_coding Interval_13473 chr10 18496960 18497269 + 0 NA intron (ENSMUSG00000039835.16, intron 2 of 6) protein_coding-intron (ENSMUSG00000039835.16, intron 2 of 6) 48950 ENSMUSG00000019853.6 ENSMUSG00000019853 ENSMUST00000214548 Hebp2 protein_coding Interval_9875 chr1 163647149 163647425 + 0 NA Intergenic Intergenic 23494 ENSMUSG00000102117.1 ENSMUSG00000102117 ENSMUST00000191040 Rpsa-ps1 processed_pseudogene Interval_57500 chr15 11867809 11868493 + 0 NA intron (ENSMUSG00000022206.7, intron 3 of 7) protein_coding-intron (ENSMUSG00000022206.7, intron 3 of 7) 37523 ENSMUSG00000022206.7 ENSMUSG00000022206 ENSMUST00000226878 Npr3 protein_coding Interval_67338 chr16 46517074 46517309 + 0 NA Intergenic Intergenic -20419 ENSMUSG00000022656.15 ENSMUSG00000022656 ENSMUST00000133935 Nectin3 protein_coding Interval_139994 chr6 113289388 113290680 + 0 NA exon (ENSMUSG00000030270.11, exon 8 of 21) protein_coding-exon (ENSMUSG00000030270.11, exon 8 of 21) 7698 ENSMUSG00000030270.11 ENSMUSG00000030270 ENSMUST00000136728 Cpne9 protein_coding Interval_130664 chr5 129594088 129594946 + 0 NA intron (ENSMUSG00000029436.9, intron 1 of 9) protein_coding-intron (ENSMUSG00000029436.9, intron 1 of 9) -2109 ENSMUSG00000029436.9 ENSMUSG00000029436 ENSMUST00000177802 Mmp17 protein_coding Interval_102567 chr3 27871531 27873455 + 0 NA intron (ENSMUSG00000043164.3, intron 3 of 3) protein_coding-intron (ENSMUSG00000043164.3, intron 3 of 3) 4380 ENSMUSG00000088772.1 ENSMUSG00000088772 ENSMUST00000158147 Gm26040 snoRNA Interval_154605 chr8 22015696 22016017 + 0 NA intron (ENSMUSG00000006567.11, intron 7 of 21) protein_coding-intron (ENSMUSG00000006567.11, intron 6 of 20) 44163 ENSMUSG00000006567.11 ENSMUSG00000006567 ENSMUST00000110738 Atp7b protein_coding Interval_62410 chr15 92161468 92161994 + 0 NA intron (ENSMUSG00000055022.14, intron 1 of 23) protein_coding-intron (ENSMUSG00000055022.14, intron 1 of 23) 110566 ENSMUSG00000055022.14 ENSMUSG00000055022 ENSMUST00000068378 Cntn1 protein_coding Interval_116795 chr4 117330302 117331601 + 0 NA intron (ENSMUSG00000028677.19, intron 2 of 2) protein_coding-intron (ENSMUSG00000028677.19, intron 2 of 14) 34807 ENSMUSG00000085749.1 ENSMUSG00000085749 ENSMUST00000139618 Gm12843 antisense Interval_51343 chr14 26562856 26563312 + 0 NA promoter-TSS (ENSMUSG00000107452.1) processed_pseudogene-promoter-TSS (ENSMUSG00000107452.1) -8 ENSMUSG00000107452.1 ENSMUSG00000107452 ENSMUST00000204429 Gm18215 processed_pseudogene Interval_101289 chr2 180198429 180198719 + 0 NA exon (ENSMUSG00000015647.9, exon 15 of 79) protein_coding-exon (ENSMUSG00000015647.9, exon 15 of 79) -18751 ENSMUSG00000098735.1 ENSMUSG00000098735 ENSMUST00000185089 Mir7005 miRNA Interval_71167 chr17 20638523 20639856 + 0 NA Intergenic Intergenic -14312 ENSMUSG00000060701.1 ENSMUSG00000060701 ENSMUST00000071189 Fpr-rs3 protein_coding Interval_60724 chr15 76372305 76373289 + 0 NA exon (ENSMUSG00000060794.8, exon 5 of 6) protein_coding-exon (ENSMUSG00000060794.8, exon 5 of 6) 2123 ENSMUSG00000060794.8 ENSMUSG00000060794 ENSMUST00000227223 Tssk5 protein_coding Interval_21251 chr10 127479030 127479482 + 0 NA intron (ENSMUSG00000025404.15, intron 5 of 14) protein_coding-intron (ENSMUSG00000025404.15, intron 13 of 23) 19721 ENSMUSG00000025404.15 ENSMUSG00000025404 ENSMUST00000171426 R3hdm2 protein_coding Interval_167535 chr9 70283280 70284225 + 0 NA intron (ENSMUSG00000032220.10, intron 1 of 17) protein_coding-intron (ENSMUSG00000032220.10, intron 1 of 27) 76402 ENSMUSG00000032220.10 ENSMUSG00000032220 ENSMUST00000034745 Myo1e protein_coding Interval_167611 chr9 71128588 71129544 + 0 NA intron (ENSMUSG00000032204.13, intron 4 of 6) protein_coding-intron (ENSMUSG00000032204.13, intron 4 of 5) 2224 ENSMUSG00000111618.1 ENSMUSG00000111618 ENSMUST00000213527 Gm47268 processed_pseudogene Interval_132190 chr5 143234881 143235850 + 0 NA promoter-TSS (ENSMUSG00000029587.16) protein_coding-promoter-TSS (ENSMUSG00000029587.16) -414 ENSMUSG00000029587.16 ENSMUSG00000029587 ENSMUST00000160195 Zfp12 protein_coding Interval_13081 chr10 11211874 11212911 + 0 NA exon (ENSMUSG00000090112.8, exon 29 of 30) protein_coding-exon (ENSMUSG00000090112.8, exon 29 of 30) 587 ENSMUSG00000090070.1 ENSMUSG00000090070 ENSMUST00000161579 Gm16577 antisense Interval_43148 chr13 24697251 24697888 + 0 NA TTS (ENSMUSG00000036006.20) protein_coding-TTS (ENSMUSG00000036006.20) -43663 ENSMUSG00000085861.1 ENSMUSG00000085861 ENSMUST00000136906 Armh2 protein_coding Interval_107508 chr3 108188432 108189246 + 0 NA exon (ENSMUSG00000050947.9, exon 2 of 2) protein_coding-exon (ENSMUSG00000050947.9, exon 2 of 2) 738 ENSMUSG00000050947.9 ENSMUSG00000050947 ENSMUST00000155782 Amigo1 protein_coding Interval_125293 chr5 65994476 65995447 + 0 NA intron (ENSMUSG00000054598.13, intron 3 of 3) protein_coding-intron (ENSMUSG00000054598.13, intron 1 of 3) 5916 ENSMUSG00000093070.1 ENSMUSG00000093070 ENSMUST00000175329 Gm25952 miRNA Interval_10764 chr1 174466220 174466437 + 0 NA Intergenic Intergenic 24246 ENSMUSG00000066671.4 ENSMUSG00000066671 ENSMUST00000085861 Olfr220 protein_coding Interval_97688 chr2 142809688 142809981 + 0 NA intron (ENSMUSG00000038844.10, intron 12 of 26) protein_coding-intron (ENSMUSG00000038844.10, intron 12 of 25) 22938 ENSMUSG00000088134.1 ENSMUSG00000088134 ENSMUST00000157509 Gm22310 snoRNA Interval_169009 chr9 90173204 90173595 + 0 NA intron (ENSMUSG00000032363.15, intron 2 of 23) protein_coding-intron (ENSMUSG00000032363.15, intron 2 of 23) 10321 ENSMUSG00000032363.15 ENSMUSG00000032363 ENSMUST00000124441 Adamts7 protein_coding Interval_171465 chr9 118537096 118538768 + 0 NA intron (ENSMUSG00000038708.10, intron 10 of 11) protein_coding-intron (ENSMUSG00000038708.10, intron 10 of 23) -10476 ENSMUSG00000038708.10 ENSMUSG00000038708 ENSMUST00000211826 Golga4 protein_coding Interval_131628 chr5 138929016 138929392 + 0 NA Intergenic Intergenic 65077 ENSMUSG00000025856.15 ENSMUSG00000025856 ENSMUST00000132051 Pdgfa protein_coding Interval_22209 chr11 7184747 7184973 + 0 NA intron (ENSMUSG00000087512.2, intron 2 of 3) protein_coding-intron (ENSMUSG00000087512.2, intron 2 of 3) 3709 ENSMUSG00000087512.2 ENSMUSG00000087512 ENSMUST00000122910 Ccdc201 protein_coding Interval_130174 chr5 124750287 124750978 + 0 NA intron (ENSMUSG00000038011.15, intron 12 of 77) protein_coding-intron (ENSMUSG00000038011.15, intron 13 of 78) -25553 ENSMUSG00000106082.4 ENSMUSG00000106082 ENSMUST00000199356 4930404A12Rik antisense Interval_52871 chr14 51385818 51386046 + 0 NA intron (ENSMUSG00000089761.3, intron 1 of 1) processed_transcript-intron (ENSMUSG00000089761.3, intron 1 of 1) 8584 ENSMUSG00000089761.3 ENSMUSG00000089761 ENSMUST00000161565 Vmn2r-ps111 processed_transcript Interval_43851 chr13 37567573 37568008 + 0 NA Intergenic Intergenic -2818 ENSMUSG00000114724.1 ENSMUSG00000114724 ENSMUST00000224689 Gm47751 lincRNA Interval_90943 chr2 33631345 33632488 + 0 NA intron (ENSMUSG00000038765.14, intron 2 of 7) protein_coding-intron (ENSMUSG00000038765.14, intron 2 of 7) 8595 ENSMUSG00000038765.14 ENSMUSG00000038765 ENSMUST00000137559 Lmx1b protein_coding Interval_88128 chr19 59431794 59432742 + 0 NA intron (ENSMUSG00000087095.2, intron 2 of 3) antisense-intron (ENSMUSG00000087095.2, intron 2 of 3) 26367 ENSMUSG00000087095.2 ENSMUSG00000087095 ENSMUST00000136990 Emx2os antisense Interval_23664 chr11 24224979 24225594 + 0 NA Intergenic Intergenic -22662 ENSMUSG00000086117.1 ENSMUSG00000086117 ENSMUST00000149592 Gm12065 lincRNA Interval_692 chr1 9955089 9955311 + 0 NA Intergenic Intergenic -11977 ENSMUSG00000098234.7 ENSMUSG00000098234 ENSMUST00000182742 Snhg6 lincRNA Interval_57887 chr15 24760567 24760892 + 0 NA Intergenic Intergenic -35936 ENSMUSG00000115607.1 ENSMUSG00000115607 ENSMUST00000226163 Gm2803 processed_pseudogene Interval_166976 chr9 64274848 64275723 + 0 NA Intergenic Intergenic -6318 ENSMUSG00000032397.7 ENSMUSG00000032397 ENSMUST00000034964 Tipin protein_coding Interval_144359 chr7 24664320 24665012 + 0 NA Intergenic Intergenic -2067 ENSMUSG00000108787.1 ENSMUSG00000108787 ENSMUST00000206367 2200007N16Rik TEC Interval_65381 chr16 22028776 22029563 + 0 NA intron (ENSMUSG00000022855.9, intron 8 of 15) protein_coding-intron (ENSMUSG00000022855.9, intron 9 of 16) 19608 ENSMUSG00000022855.9 ENSMUSG00000022855 ENSMUST00000232263 Senp2 protein_coding Interval_164703 chr9 40671410 40672138 + 0 NA TTS (ENSMUSG00000094204.1) protein_coding-TTS (ENSMUSG00000094204.1) 1161 ENSMUSG00000094204.1 ENSMUSG00000094204 ENSMUST00000177787 Gm21915 protein_coding Interval_135887 chr6 48422386 48422586 + 0 NA Intergenic Intergenic 1717 ENSMUSG00000093085.1 ENSMUSG00000093085 ENSMUST00000175344 Gm24325 miRNA Interval_86433 chr19 40453695 40454797 + 0 NA intron (ENSMUSG00000025006.18, intron 1 of 23) protein_coding-intron (ENSMUSG00000025006.18, intron 1 of 3) -77372 ENSMUSG00000025006.18 ENSMUSG00000025006 ENSMUST00000225293 Sorbs1 protein_coding Interval_83223 chr18 82854822 82856926 + 0 NA promoter-TSS (ENSMUSG00000097738.2) lincRNA-promoter-TSS (ENSMUSG00000097738.2) -20 ENSMUSG00000097738.2 ENSMUSG00000097738 ENSMUST00000180631 4930445N18Rik lincRNA Interval_169038 chr9 90700286 90701237 + 0 NA Intergenic Intergenic 32763 ENSMUSG00000099366.1 ENSMUSG00000099366 ENSMUST00000189539 Gm2497 processed_pseudogene Interval_143459 chr7 6958509 6959087 + 0 NA intron (ENSMUSG00000108043.2, intron 6 of 6) protein_coding-intron (ENSMUSG00000051527.11, intron 6 of 7) 16666 ENSMUSG00000108043.2 ENSMUSG00000108043 ENSMUST00000203351 Zim3 antisense Interval_33489 chr11 116842690 116844106 + 0 NA promoter-TSS (ENSMUSG00000056962.11) protein_coding-promoter-TSS (ENSMUSG00000056962.11) -43 ENSMUSG00000056962.11 ENSMUSG00000056962 ENSMUST00000140513 Jmjd6 protein_coding Interval_127067 chr5 100051252 100051589 + 0 NA intron (ENSMUSG00000029326.13, intron 1 of 2) protein_coding-intron (ENSMUSG00000029326.13, intron 1 of 6) 5571 ENSMUSG00000089491.1 ENSMUSG00000089491 ENSMUST00000158866 Gm26363 snoRNA Interval_2369 chr1 38626539 38628293 + 0 NA promoter-TSS (ENSMUSG00000037138.18) protein_coding-promoter-TSS (ENSMUSG00000037138.18) -215 ENSMUSG00000037138.18 ENSMUSG00000037138 ENSMUST00000134963 Aff3 protein_coding Interval_79237 chr18 26680448 26680681 + 0 NA Intergenic Intergenic 185129 ENSMUSG00000088098.1 ENSMUSG00000088098 ENSMUST00000157473 Gm23674 snoRNA Interval_6845 chr1 120062020 120062269 + 0 NA intron (ENSMUSG00000026387.15, intron 12 of 12) protein_coding-intron (ENSMUSG00000026387.15, intron 13 of 13) 11930 ENSMUSG00000050777.7 ENSMUSG00000050777 ENSMUST00000056089 Tmem37 protein_coding Interval_50574 chr14 15801624 15801966 + 0 NA intron (ENSMUSG00000114794.1, intron 3 of 3) lincRNA-intron (ENSMUSG00000114794.1, intron 3 of 3) 28106 ENSMUSG00000114586.1 ENSMUSG00000114586 ENSMUST00000225565 Gm31804 lincRNA Interval_42520 chr13 14426421 14427694 + 0 NA intron (ENSMUSG00000021301.9, intron 1 of 2) protein_coding-intron (ENSMUSG00000021301.9, intron 2 of 28) -47484 ENSMUSG00000113981.1 ENSMUSG00000113981 ENSMUST00000222578 Gm47011 TEC Interval_28072 chr11 72633234 72633756 + 0 NA intron (ENSMUSG00000020794.13, intron 1 of 4) protein_coding-intron (ENSMUSG00000020794.13, intron 1 of 5) -15430 ENSMUSG00000092725.1 ENSMUSG00000092725 ENSMUST00000174984 Gm25678 miRNA Interval_174735 chrX 164398160 164400047 + 0 NA intron (ENSMUSG00000031380.10, intron 3 of 3) protein_coding-intron (ENSMUSG00000031380.10, intron 5 of 6) 7860 ENSMUSG00000031380.10 ENSMUSG00000031380 ENSMUST00000124851 Vegfd protein_coding Interval_148092 chr7 79187683 79188180 + 0 NA Intergenic Intergenic -39700 ENSMUSG00000030605.15 ENSMUSG00000030605 ENSMUST00000206844 Mfge8 protein_coding Interval_4631 chr1 75548945 75549208 + 0 NA promoter-TSS (ENSMUSG00000006576.16) protein_coding-promoter-TSS (ENSMUSG00000006576.16) 2420 ENSMUSG00000006576.16 ENSMUSG00000006576 ENSMUST00000132110 Slc4a3 protein_coding Interval_46640 chr13 67850151 67851048 + 0 NA Intergenic Intergenic -12727 ENSMUSG00000064063.6 ENSMUSG00000064063 ENSMUST00000078471 BC048507 protein_coding Interval_74824 chr17 56746221 56746414 + 0 NA Intergenic Intergenic 11213 ENSMUSG00000039481.5 ENSMUSG00000039481 ENSMUST00000044752 Nrtn protein_coding Interval_49206 chr13 109440500 109441542 + 0 NA intron (ENSMUSG00000021699.17, intron 2 of 5) protein_coding-intron (ENSMUSG00000021699.17, intron 1 of 14) 116277 ENSMUSG00000076946.2 ENSMUSG00000076946 ENSMUST00000103758 Mir582 miRNA Interval_90138 chr2 28467872 28468473 + 0 NA promoter-TSS (ENSMUSG00000035772.11) protein_coding-promoter-TSS (ENSMUSG00000035772.11) 82 ENSMUSG00000035772.11 ENSMUSG00000035772 ENSMUST00000146332 Mrps2 protein_coding Interval_161065 chr8 117269976 117270429 + 0 NA intron (ENSMUSG00000034390.16, intron 1 of 10) protein_coding-intron (ENSMUSG00000034390.16, intron 1 of 20) 112065 ENSMUSG00000052557.11 ENSMUSG00000052557 ENSMUST00000162997 Gan protein_coding Interval_66523 chr16 34750344 34750645 + 0 NA intron (ENSMUSG00000022836.11, intron 1 of 5) protein_coding-intron (ENSMUSG00000022836.11, intron 1 of 5) 59784 ENSMUSG00000022833.7 ENSMUSG00000022833 ENSMUST00000232341 Ccdc14 protein_coding Interval_63134 chr15 99271528 99272237 + 0 NA intron (ENSMUSG00000078907.2, intron 7 of 7) protein_coding-intron (ENSMUSG00000078907.2, intron 7 of 7) -16868 ENSMUSG00000093139.1 ENSMUSG00000093139 ENSMUST00000175398 Gm25999 snoRNA Interval_138366 chr6 87639701 87639955 + 0 NA intron (ENSMUSG00000030051.10, intron 8 of 9) protein_coding-intron (ENSMUSG00000030051.10, intron 8 of 10) -17926 ENSMUSG00000107593.1 ENSMUSG00000107593 ENSMUST00000204112 Gm44097 antisense Interval_88241 chr19 61059411 61060835 + 0 NA intron (ENSMUSG00000074733.14, intron 3 of 6) protein_coding-intron (ENSMUSG00000003228.9, intron 4 of 15) -46578 ENSMUSG00000088894.1 ENSMUSG00000088894 ENSMUST00000158269 Gm22520 snoRNA Interval_43014 chr13 23087815 23088198 + 0 NA Intergenic Intergenic -8970 ENSMUSG00000115697.2 ENSMUSG00000115697 ENSMUST00000227317 Vmn1r216 protein_coding Interval_20330 chr10 116922224 116924108 + 0 NA intron (ENSMUSG00000064181.6, intron 3 of 9) protein_coding-intron (ENSMUSG00000064181.6, intron 3 of 9) -26247 ENSMUSG00000034057.8 ENSMUSG00000034057 ENSMUST00000048229 Myrfl protein_coding Interval_95148 chr2 104318941 104319208 + 0 NA intron (ENSMUSG00000068373.15, intron 1 of 20) protein_coding-intron (ENSMUSG00000068373.15, intron 1 of 20) 27500 ENSMUSG00000081721.3 ENSMUSG00000081721 ENSMUST00000120886 Gm13882 processed_pseudogene Interval_33943 chr11 119571708 119573283 + 0 NA Intergenic Intergenic 23865 ENSMUSG00000087675.1 ENSMUSG00000087675 ENSMUST00000135630 Gm11762 processed_transcript Interval_121366 chr4 155289927 155291009 + 0 NA TTS (ENSMUSG00000029053.16) protein_coding-TTS (ENSMUSG00000029053.16) 40502 ENSMUSG00000073684.13 ENSMUSG00000073684 ENSMUST00000156404 Faap20 protein_coding Interval_22723 chr11 13969697 13970716 + 0 NA Intergenic Intergenic -191873 ENSMUSG00000081631.1 ENSMUSG00000081631 ENSMUST00000121451 Gm12005 processed_pseudogene Interval_118732 chr4 133432512 133433314 + 0 NA Intergenic Intergenic 16607 ENSMUSG00000028854.9 ENSMUSG00000028854 ENSMUST00000141658 Slc9a1 protein_coding Interval_57021 chr15 4361071 4361441 + 0 NA Intergenic Intergenic -14235 ENSMUSG00000049148.8 ENSMUSG00000049148 ENSMUST00000061925 Plcxd3 protein_coding Interval_153001 chr7 140756157 140756503 + 0 NA Intergenic Intergenic -8151 ENSMUSG00000025479.9 ENSMUSG00000025479 ENSMUST00000210403 Cyp2e1 protein_coding Interval_103747 chr3 52296527 52296774 + 0 NA intron (ENSMUSG00000044167.6, intron 1 of 2) protein_coding-intron (ENSMUSG00000044167.6, intron 1 of 2) 14409 ENSMUSG00000102844.1 ENSMUSG00000102844 ENSMUST00000193915 Gm38034 TEC Interval_128346 chr5 112655266 112656832 + 0 NA Intergenic Intergenic 6682 ENSMUSG00000105152.1 ENSMUSG00000105152 ENSMUST00000198371 Gm42864 lincRNA Interval_38314 chr12 77065610 77067175 + 0 NA Intergenic Intergenic -24191 ENSMUSG00000112030.1 ENSMUSG00000112030 ENSMUST00000219319 Gm35189 lincRNA Interval_40745 chr12 108091034 108091265 + 0 NA Intergenic Intergenic 71860 ENSMUSG00000056770.15 ENSMUSG00000056770 ENSMUST00000125916 Setd3 protein_coding Interval_161742 chr8 122482742 122484395 + 0 NA promoter-TSS (ENSMUSG00000014444.17) protein_coding-promoter-TSS (ENSMUSG00000014444.17) 2223 ENSMUSG00000049482.16 ENSMUSG00000049482 ENSMUST00000212499 Ctu2 protein_coding Interval_1921 chr1 34559437 34561487 + 0 NA intron (ENSMUSG00000037529.13, intron 1 of 4) protein_coding-intron (ENSMUSG00000037529.13, intron 1 of 4) -2351 ENSMUSG00000037529.13 ENSMUSG00000037529 ENSMUST00000047840 Prss40 protein_coding Interval_64858 chr16 16599538 16600624 + 0 NA promoter-TSS (ENSMUSG00000022788.16) protein_coding-promoter-TSS (ENSMUSG00000022788.16) -40035 ENSMUSG00000022788.16 ENSMUSG00000022788 ENSMUST00000161624 Fgd4 protein_coding Interval_101876 chr3 10330971 10331853 + 0 NA promoter-TSS (ENSMUSG00000027531.16) protein_coding-promoter-TSS (ENSMUSG00000027531.16) 4244 ENSMUSG00000058921.3 ENSMUSG00000058921 ENSMUST00000078748 Slc10a5 protein_coding Interval_102105 chr3 17645699 17646209 + 0 NA Intergenic Intergenic -24734 ENSMUSG00000104242.1 ENSMUSG00000104242 ENSMUST00000195444 Gm38154 processed_pseudogene Interval_116353 chr4 110125070 110125984 + 0 NA Intergenic Intergenic 147474 ENSMUSG00000047143.3 ENSMUSG00000047143 ENSMUST00000061187 Dmrta2 protein_coding Interval_139169 chr6 96787013 96787585 + 0 NA Intergenic Intergenic -226435 ENSMUSG00000077598.1 ENSMUSG00000077598 ENSMUST00000104410 Gm26011 snRNA Interval_34160 chr11 120990075 120991797 + 0 NA promoter-TSS (ENSMUSG00000025162.18) protein_coding-promoter-TSS (ENSMUSG00000025162.18) 394 ENSMUSG00000025162.18 ENSMUSG00000025162 ENSMUST00000155070 Csnk1d protein_coding Interval_57629 chr15 12925081 12927240 + 0 NA intron (ENSMUSG00000022191.16, intron 31 of 34) protein_coding-intron (ENSMUSG00000022191.16, intron 31 of 34) -29562 ENSMUSG00000115807.1 ENSMUSG00000115807 ENSMUST00000226269 Gm49100 unprocessed_pseudogene Interval_146119 chr7 44102086 44102663 + 0 NA promoter-TSS (ENSMUSG00000066516.5) protein_coding-promoter-TSS (ENSMUSG00000066516.5) 46 ENSMUSG00000066516.5 ENSMUSG00000066516 ENSMUST00000085455 Klk1b21 protein_coding Interval_151595 chr7 124700865 124701297 + 0 NA intron (ENSMUSG00000086254.1, intron 1 of 3) lincRNA-intron (ENSMUSG00000086254.1, intron 1 of 3) 7854 ENSMUSG00000086254.1 ENSMUSG00000086254 ENSMUST00000130240 3100003L05Rik lincRNA Interval_144058 chr7 19227508 19229117 + 0 NA promoter-TSS (ENSMUSG00000052214.9) protein_coding-promoter-TSS (ENSMUSG00000052214.9) -71 ENSMUSG00000052214.9 ENSMUSG00000052214 ENSMUST00000161711 Opa3 protein_coding Interval_119752 chr4 139677394 139677777 + 0 NA Intergenic Intergenic 24036 ENSMUSG00000028738.14 ENSMUSG00000028738 ENSMUST00000166773 Tas1r2 protein_coding Interval_166056 chr9 56133768 56135025 + 0 NA intron (ENSMUSG00000032324.11, intron 7 of 7) protein_coding-intron (ENSMUSG00000032324.11, intron 7 of 7) 31081 ENSMUSG00000032324.11 ENSMUSG00000032324 ENSMUST00000216320 Tspan3 protein_coding Interval_38356 chr12 77718683 77718883 + 0 NA Intergenic Intergenic 35722 ENSMUSG00000111903.1 ENSMUSG00000111903 ENSMUST00000219952 4930458K08Rik lincRNA Interval_15542 chr10 51018570 51018777 + 0 NA Intergenic Intergenic 123919 ENSMUSG00000019913.4 ENSMUSG00000019913 ENSMUST00000020071 Sim1 protein_coding Interval_132181 chr5 143151885 143152229 + 0 NA Intergenic Intergenic -5120 ENSMUSG00000104836.1 ENSMUSG00000104836 ENSMUST00000198952 Gm44405 miRNA Interval_174220 chrX 140093755 140094980 + 0 NA intron (ENSMUSG00000042433.2, intron 5 of 6) protein_coding-intron (ENSMUSG00000042433.2, intron 5 of 6) -8907 ENSMUSG00000081761.2 ENSMUSG00000081761 ENSMUST00000122262 Gm6298 processed_pseudogene Interval_133280 chr5 151071609 151072258 + 0 NA exon (ENSMUSG00000016128.14, exon 4 of 4) protein_coding-exon (ENSMUSG00000016128.14, exon 4 of 4) 36802 ENSMUSG00000016128.14 ENSMUSG00000016128 ENSMUST00000202866 Stard13 protein_coding Interval_167533 chr9 70274309 70274933 + 0 NA intron (ENSMUSG00000032220.10, intron 1 of 17) protein_coding-intron (ENSMUSG00000032220.10, intron 1 of 27) 67271 ENSMUSG00000032220.10 ENSMUSG00000032220 ENSMUST00000034745 Myo1e protein_coding Interval_172615 chrX 38445075 38446212 + 0 NA intron (ENSMUSG00000016534.15, intron 1 of 8) protein_coding-intron (ENSMUSG00000016534.15, intron 1 of 8) 10771 ENSMUSG00000016534.15 ENSMUSG00000016534 ENSMUST00000144663 Lamp2 protein_coding Interval_81549 chr18 61632510 61635029 + 0 NA Intergenic Intergenic -5884 ENSMUSG00000098098.7 ENSMUSG00000098098 ENSMUST00000183087 Bvht lincRNA Interval_23637 chr11 24008138 24008742 + 0 NA Intergenic Intergenic -6215 ENSMUSG00000104783.1 ENSMUSG00000104783 ENSMUST00000199670 Gm44381 miRNA Interval_27323 chr11 66258480 66259312 + 0 NA intron (ENSMUSG00000053930.13, intron 2 of 4) protein_coding-intron (ENSMUSG00000053930.13, intron 2 of 4) 90861 ENSMUSG00000084967.1 ENSMUSG00000084967 ENSMUST00000144922 Gm12296 processed_transcript Interval_154232 chr8 13624644 13625439 + 0 NA intron (ENSMUSG00000031453.16, intron 3 of 6) protein_coding-intron (ENSMUSG00000031453.16, intron 2 of 23) 52410 ENSMUSG00000031453.16 ENSMUSG00000031453 ENSMUST00000132439 Rasa3 protein_coding Interval_37912 chr12 73010864 73011129 + 0 NA Intergenic Intergenic 31819 ENSMUSG00000051367.8 ENSMUSG00000051367 ENSMUST00000175677 Six1 protein_coding Interval_100253 chr2 167986179 167987587 + 0 NA promoter-TSS (ENSMUSG00000074577.9) protein_coding-promoter-TSS (ENSMUSG00000074577.9) 4464 ENSMUSG00000074577.9 ENSMUSG00000074577 ENSMUST00000142702 Ripor3 protein_coding Interval_111086 chr4 11780714 11780985 + 0 NA intron (ENSMUSG00000028217.11, intron 4 of 14) protein_coding-intron (ENSMUSG00000028217.11, intron 4 of 17) 22656 ENSMUSG00000028217.11 ENSMUSG00000028217 ENSMUST00000108303 Cdh17 protein_coding Interval_104927 chr3 79066308 79067176 + 0 NA exon (ENSMUSG00000062232.14, exon 23 of 24) protein_coding-exon (ENSMUSG00000062232.14, exon 23 of 24) 86820 ENSMUSG00000077487.1 ENSMUSG00000077487 ENSMUST00000104299 Gm23440 snoRNA Interval_125773 chr5 74044288 74044707 + 0 NA intron (ENSMUSG00000054814.14, intron 1 of 8) protein_coding-intron (ENSMUSG00000054814.14, intron 1 of 8) 9008 ENSMUSG00000106993.1 ENSMUSG00000106993 ENSMUST00000201586 Gm43417 TEC Interval_74790 chr17 56552780 56554738 + 0 NA intron (ENSMUSG00000110218.1, intron 1 of 3) protein_coding-intron (ENSMUSG00000110218.1, intron 1 of 3) 628 ENSMUSG00000110218.1 ENSMUSG00000110218 ENSMUST00000209718 Gm20219 protein_coding Interval_152183 chr7 130496991 130497439 + 0 NA intron (ENSMUSG00000030850.17, intron 7 of 11) protein_coding-intron (ENSMUSG00000030850.17, intron 7 of 11) 22246 ENSMUSG00000030850.17 ENSMUSG00000030850 ENSMUST00000207141 Ate1 protein_coding Interval_106794 chr3 100873324 100873568 + 0 NA intron (ENSMUSG00000051076.8, intron 1 of 5) protein_coding-intron (ENSMUSG00000051076.8, intron 1 of 5) 47987 ENSMUSG00000051076.8 ENSMUSG00000051076 ENSMUST00000054791 Vtcn1 protein_coding Interval_86745 chr19 43550322 43551481 + 0 NA intron (ENSMUSG00000117991.1, intron 2 of 2) lincRNA-intron (ENSMUSG00000117991.1, intron 2 of 2) 6718 ENSMUSG00000118308.1 ENSMUSG00000118308 ENSMUST00000236158 Gm19179 processed_pseudogene Interval_21307 chr10 127829056 127830686 + 0 NA intron (ENSMUSG00000054031.13, intron 1 of 3) protein_coding-intron (ENSMUSG00000069456.4, intron 2 of 3) 5587 ENSMUSG00000054031.13 ENSMUSG00000054031 ENSMUST00000143917 Rdh18-ps transcribed_unprocessed_pseudogene Interval_25493 chr11 49211560 49211779 + 0 NA intron (ENSMUSG00000046311.13, intron 1 of 3) protein_coding-intron (ENSMUSG00000046311.13, intron 1 of 4) -1019 ENSMUSG00000046311.13 ENSMUSG00000046311 ENSMUST00000061757 Zfp62 protein_coding Interval_118500 chr4 132130586 132131413 + 0 NA intron (ENSMUSG00000050511.1, intron 1 of 2) protein_coding-intron (ENSMUSG00000050511.1, intron 1 of 2) 13487 ENSMUSG00000050511.1 ENSMUSG00000050511 ENSMUST00000056336 Oprd1 protein_coding Interval_128709 chr5 114853548 114853823 + 0 NA promoter-TSS (ENSMUSG00000029564.12) protein_coding-promoter-TSS (ENSMUSG00000029564.12) 1737 ENSMUSG00000098343.1 ENSMUSG00000098343 ENSMUST00000184281 Mir6240 miRNA Interval_58265 chr15 31494464 31494951 + 0 NA intron (ENSMUSG00000039100.10, intron 7 of 25) protein_coding-intron (ENSMUSG00000039100.10, intron 7 of 25) -7778 ENSMUSG00000115383.1 ENSMUSG00000115383 ENSMUST00000227757 Gm49216 sense_overlapping Interval_51132 chr14 23981453 23982278 + 0 NA intron (ENSMUSG00000063142.15, intron 1 of 16) protein_coding-intron (ENSMUSG00000063142.15, intron 1 of 29) -23126 ENSMUSG00000114953.1 ENSMUSG00000114953 ENSMUST00000223837 4930519K11Rik bidirectional_promoter_lncRNA Interval_100850 chr2 172873976 172874146 + 0 NA intron (ENSMUSG00000008999.7, intron 5 of 6) protein_coding-intron (ENSMUSG00000008999.7, intron 5 of 6) -9720 ENSMUSG00000093160.1 ENSMUSG00000093160 ENSMUST00000175419 Gm22773 miRNA Interval_95963 chr2 118710736 118711794 + 0 NA exon (ENSMUSG00000040061.17, exon 1 of 3) protein_coding-exon (ENSMUSG00000040061.17, exon 1 of 3) -7302 ENSMUSG00000078137.1 ENSMUSG00000078137 ENSMUST00000104937 Ankrd63 protein_coding Interval_19782 chr10 108747969 108748299 + 0 NA intron (ENSMUSG00000035864.14, intron 3 of 7) protein_coding-intron (ENSMUSG00000035864.14, intron 3 of 10) -30177 ENSMUSG00000111910.1 ENSMUSG00000111910 ENSMUST00000219164 Gm47472 TEC Interval_115345 chr4 97656098 97656368 + 0 NA intron (ENSMUSG00000048747.14, intron 1 of 2) protein_coding-intron (ENSMUSG00000048747.14, intron 3 of 5) 34503 ENSMUSG00000048747.14 ENSMUSG00000048747 ENSMUST00000147069 E130114P18Rik protein_coding Interval_60867 chr15 77245407 77245916 + 0 NA promoter-TSS (ENSMUSG00000033565.18) protein_coding-promoter-TSS (ENSMUSG00000033565.18) -3110 ENSMUSG00000089242.1 ENSMUSG00000089242 ENSMUST00000158617 Gm24056 snRNA Interval_123201 chr5 30596750 30597060 + 0 NA intron (ENSMUSG00000049265.7, intron 1 of 1) protein_coding-intron (ENSMUSG00000049265.7, intron 1 of 1) -17050 ENSMUSG00000053214.7 ENSMUSG00000053214 ENSMUST00000200563 Gm9899 processed_transcript Interval_45069 chr13 51839787 51840129 + 0 NA Intergenic Intergenic -6786 ENSMUSG00000021453.2 ENSMUSG00000021453 ENSMUST00000132480 Gadd45g protein_coding Interval_82201 chr18 68942303 68944489 + 0 NA intron (ENSMUSG00000024546.6, intron 3 of 6) lincRNA-intron (ENSMUSG00000024546.6, intron 3 of 6) 8132 ENSMUSG00000024546.6 ENSMUSG00000024546 ENSMUST00000025428 4930546C10Rik lincRNA Interval_141345 chr6 127497348 127498140 + 0 NA Intergenic Intergenic 11951 ENSMUSG00000106962.1 ENSMUSG00000106962 ENSMUST00000202455 Gm43633 TEC Interval_135124 chr6 35814295 35814980 + 0 NA Intergenic Intergenic -112074 ENSMUSG00000107145.1 ENSMUSG00000107145 ENSMUST00000202865 Gm43442 processed_pseudogene Interval_92089 chr2 53123322 53123843 + 0 NA intron (ENSMUSG00000036053.17, intron 23 of 26) protein_coding-intron (ENSMUSG00000036053.17, intron 23 of 26) 67605 ENSMUSG00000061136.16 ENSMUSG00000061136 ENSMUST00000132031 Prpf40a protein_coding Interval_150155 chr7 107431881 107432588 + 0 NA intron (ENSMUSG00000062542.11, intron 2 of 5) protein_coding-intron (ENSMUSG00000062542.11, intron 2 of 6) 66162 ENSMUSG00000109078.1 ENSMUSG00000109078 ENSMUST00000208516 Gm19033 processed_pseudogene Interval_37463 chr12 69147309 69147899 + 0 NA Intergenic Intergenic 4773 ENSMUSG00000089071.1 ENSMUSG00000089071 ENSMUST00000158446 Gm24499 snRNA Interval_70954 chr17 16730369 16730685 + 0 NA Intergenic Intergenic 4074 ENSMUSG00000116944.1 ENSMUSG00000116944 ENSMUST00000231367 Gm7477 processed_pseudogene Interval_172752 chrX 48304809 48306230 + 0 NA Intergenic Intergenic -1524 ENSMUSG00000088918.1 ENSMUSG00000088918 ENSMUST00000158293 Gm22612 snRNA Interval_14875 chr10 40692132 40692380 + 0 NA intron (ENSMUSG00000045555.3, intron 1 of 4) protein_coding-intron (ENSMUSG00000045555.3, intron 1 of 4) 8974 ENSMUSG00000045555.3 ENSMUSG00000045555 ENSMUST00000058747 Mettl24 protein_coding Interval_103171 chr3 36232680 36233449 + 0 NA Intergenic Intergenic -10789 ENSMUSG00000058400.13 ENSMUSG00000058400 ENSMUST00000197275 Qrfpr protein_coding Interval_135060 chr6 35033482 35033728 + 0 NA intron (ENSMUSG00000038784.13, intron 10 of 11) protein_coding-intron (ENSMUSG00000038784.13, intron 10 of 10) -45201 ENSMUSG00000029847.13 ENSMUSG00000029847 ENSMUST00000144079 Slc23a4 protein_coding Interval_41371 chr12 113132734 113133425 + 0 NA intron (ENSMUSG00000021144.14, intron 1 of 1) protein_coding-intron (ENSMUSG00000021144.14, intron 16 of 20) 1531 ENSMUSG00000021144.14 ENSMUSG00000021144 ENSMUST00000156030 Mta1 protein_coding Interval_146360 chr7 45515311 45516485 + 0 NA promoter-TSS (ENSMUSG00000023467.18) protein_coding-promoter-TSS (ENSMUSG00000023467.18) -3331 ENSMUSG00000110387.1 ENSMUSG00000110387 ENSMUST00000209472 Gm45478 processed_pseudogene Interval_35515 chr12 24176207 24176706 + 0 NA TTS (ENSMUSG00000113632.1) unprocessed_pseudogene-TTS (ENSMUSG00000113632.1) 2813 ENSMUSG00000113632.1 ENSMUSG00000113632 ENSMUST00000222650 Gm47446 unprocessed_pseudogene Interval_30166 chr11 90033063 90033339 + 0 NA intron (ENSMUSG00000069763.3, intron 1 of 2) protein_coding-intron (ENSMUSG00000069763.3, intron 1 of 2) 2853 ENSMUSG00000069763.3 ENSMUSG00000069763 ENSMUST00000092788 Tmem100 protein_coding Interval_162736 chr9 8187332 8188281 + 0 NA Intergenic Intergenic -33620 ENSMUSG00000111845.1 ENSMUSG00000111845 ENSMUST00000215099 Gm7495 processed_pseudogene Interval_115772 chr4 103802728 103803618 + 0 NA intron (ENSMUSG00000028519.16, intron 1 of 3) protein_coding-intron (ENSMUSG00000028519.16, intron 1 of 9) 136368 ENSMUSG00000080913.1 ENSMUSG00000080913 ENSMUST00000118859 Gm12719 processed_pseudogene Interval_144593 chr7 26699752 26700672 + 0 NA Intergenic Intergenic -13775 ENSMUSG00000040650.8 ENSMUSG00000040650 ENSMUST00000077356 Cyp2b23 protein_coding Interval_43061 chr13 23542553 23545133 + 0 NA promoter-TSS (ENSMUSG00000100210.2) protein_coding-promoter-TSS (ENSMUSG00000100210.2) -209 ENSMUSG00000100210.2 ENSMUSG00000100210 ENSMUST00000075558 H3c7 protein_coding Interval_47549 chr13 87786082 87786253 + 0 NA Intergenic Intergenic 3196 ENSMUSG00000098011.1 ENSMUSG00000098011 ENSMUST00000182187 Gm21232 processed_pseudogene Interval_153339 chr7 143754163 143754387 + 0 NA intron (ENSMUSG00000037606.18, intron 1 of 5) protein_coding-intron (ENSMUSG00000037606.18, intron 1 of 5) 11301 ENSMUSG00000050276.7 ENSMUSG00000050276 ENSMUST00000208986 Mrgprg protein_coding Interval_137121 chr6 67713778 67714230 + 0 NA Intergenic Intergenic -2376 ENSMUSG00000104883.1 ENSMUSG00000104883 ENSMUST00000199111 Igkv14-134-1 IG_V_pseudogene Interval_70466 chr17 10399623 10399913 + 0 NA Intergenic Intergenic -56448 ENSMUSG00000089633.2 ENSMUSG00000089633 ENSMUST00000160738 A230009B12Rik antisense Interval_29203 chr11 81515992 81516198 + 0 NA intron (ENSMUSG00000020704.13, intron 1 of 9) protein_coding-intron (ENSMUSG00000020704.13, intron 1 of 9) 57378 ENSMUSG00000080980.1 ENSMUSG00000080980 ENSMUST00000117522 1700071K01Rik processed_pseudogene Interval_136390 chr6 54039372 54040698 + 0 NA promoter-TSS (ENSMUSG00000004633.17) protein_coding-promoter-TSS (ENSMUSG00000004633.17) 61306 ENSMUSG00000108060.2 ENSMUSG00000108060 ENSMUST00000203047 4921529L05Rik processed_transcript Interval_118465 chr4 131836359 131838715 + 0 NA intron (ENSMUSG00000028909.17, intron 1 of 25) protein_coding-intron (ENSMUSG00000028909.17, intron 1 of 30) -20200 ENSMUSG00000028910.12 ENSMUSG00000028910 ENSMUST00000128607 Mecr protein_coding Interval_41423 chr12 113693132 113693488 + 0 NA Intergenic Intergenic -5589 ENSMUSG00000103185.1 ENSMUSG00000103185 ENSMUST00000193354 Ighv5-11 IG_V_pseudogene Interval_39771 chr12 97988401 97989125 + 0 NA Intergenic Intergenic 111592 ENSMUSG00000112086.1 ENSMUSG00000112086 ENSMUST00000220437 Gm35412 processed_pseudogene Interval_95442 chr2 109374586 109375237 + 0 NA Intergenic Intergenic 82888 ENSMUSG00000027115.14 ENSMUSG00000027115 ENSMUST00000162515 Kif18a protein_coding Interval_52318 chr14 44837758 44839948 + 0 NA Intergenic Intergenic -7197 ENSMUSG00000115521.1 ENSMUSG00000115521 ENSMUST00000227561 Gm34198 processed_pseudogene Interval_2125 chr1 36592735 36593436 + 0 NA intron (ENSMUSG00000046337.17, intron 2 of 5) protein_coding-intron (ENSMUSG00000046337.17, intron 10 of 14) 7347 ENSMUSG00000046337.17 ENSMUSG00000046337 ENSMUST00000114981 Fam178b protein_coding Interval_127207 chr5 101325662 101328165 + 0 NA Intergenic Intergenic 21335 ENSMUSG00000105965.1 ENSMUSG00000105965 ENSMUST00000197114 Cycs-ps2 processed_pseudogene Interval_52359 chr14 45386955 45389448 + 0 NA intron (ENSMUSG00000037722.8, intron 2 of 4) protein_coding-intron (ENSMUSG00000037722.8, intron 1 of 5) -4758 ENSMUSG00000037722.8 ENSMUSG00000037722 ENSMUST00000226590 Gnpnat1 protein_coding Interval_108492 chr3 127632297 127634856 + 0 NA intron (ENSMUSG00000027967.8, intron 1 of 1) protein_coding-intron (ENSMUSG00000027967.8, intron 1 of 1) 441 ENSMUSG00000027967.8 ENSMUSG00000027967 ENSMUST00000029587 Neurog2 protein_coding Interval_136968 chr6 65129727 65130221 + 0 NA TTS (ENSMUSG00000090939.1) processed_pseudogene-TTS (ENSMUSG00000090939.1) 1403 ENSMUSG00000090939.1 ENSMUSG00000090939 ENSMUST00000164176 Gm17147 processed_pseudogene Interval_148559 chr7 82668667 82669010 + 0 NA intron (ENSMUSG00000038563.14, intron 4 of 19) protein_coding-intron (ENSMUSG00000038563.14, intron 4 of 19) -8708 ENSMUSG00000108855.1 ENSMUSG00000108855 ENSMUST00000208798 Gm44917 processed_pseudogene Interval_58736 chr15 37542906 37543523 + 0 NA intron (ENSMUSG00000115157.1, intron 6 of 7) protein_coding-intron (ENSMUSG00000051359.15, intron 4 of 6) 18616 ENSMUSG00000115095.1 ENSMUSG00000115095 ENSMUST00000228636 Gm49311 TEC Interval_34788 chr12 11204248 11204764 + 0 NA promoter-TSS (ENSMUSG00000112041.1) lincRNA-promoter-TSS (ENSMUSG00000112041.1) -125 ENSMUSG00000112041.1 ENSMUSG00000112041 ENSMUST00000218368 9530020I12Rik lincRNA Interval_1197 chr1 16880485 16881067 + 0 NA Intergenic Intergenic -17409 ENSMUSG00000101640.1 ENSMUSG00000101640 ENSMUST00000186604 Gm28376 antisense Interval_738 chr1 10294950 10295128 + 0 NA Intergenic Intergenic -96237 ENSMUSG00000102556.1 ENSMUSG00000102556 ENSMUST00000192111 Gm37569 TEC Interval_43932 chr13 38132565 38133601 + 0 NA Intergenic Intergenic 18709 ENSMUSG00000103789.1 ENSMUSG00000103789 ENSMUST00000191991 Gm10129 TEC Interval_46927 chr13 73488026 73489385 + 0 NA intron (ENSMUSG00000021608.15, intron 2 of 13) protein_coding-intron (ENSMUSG00000021608.15, intron 2 of 13) 16954 ENSMUSG00000021608.15 ENSMUSG00000021608 ENSMUST00000222881 Lpcat1 protein_coding Interval_29452 chr11 84081474 84082517 + 0 NA TTS (ENSMUSG00000018651.14) protein_coding-TTS (ENSMUSG00000018651.14) 961 ENSMUSG00000018651.14 ENSMUSG00000018651 ENSMUST00000134994 Tada2a protein_coding Interval_103521 chr3 46512935 46513578 + 0 NA Intergenic Intergenic -65336 ENSMUSG00000090919.6 ENSMUSG00000090919 ENSMUST00000195537 Pabpc4l protein_coding Interval_162007 chr8 124386226 124387063 + 0 NA intron (ENSMUSG00000050751.14, intron 1 of 6) protein_coding-intron (ENSMUSG00000050751.14, intron 1 of 6) 29406 ENSMUSG00000064664.1 ENSMUSG00000064664 ENSMUST00000082730 Gm24459 snRNA Interval_73360 chr17 36706709 36708300 + 0 NA promoter-TSS (ENSMUSG00000092172.1) unprocessed_pseudogene-promoter-TSS (ENSMUSG00000092172.1) -657 ENSMUSG00000092172.1 ENSMUSG00000092172 ENSMUST00000174340 Gm20523 unprocessed_pseudogene Interval_82307 chr18 70539029 70540470 + 0 NA Intergenic Intergenic 22963 ENSMUSG00000098721.1 ENSMUSG00000098721 ENSMUST00000184246 Mir6357 miRNA Interval_17629 chr10 78351647 78352885 + 0 NA promoter-TSS (ENSMUSG00000001211.15) protein_coding-promoter-TSS (ENSMUSG00000001211.15) -237 ENSMUSG00000112641.1 ENSMUSG00000112641 ENSMUST00000218247 Gm40709 bidirectional_promoter_lncRNA Interval_63287 chr15 100108378 100108597 + 0 NA promoter-TSS (ENSMUSG00000116311.1) antisense-promoter-TSS (ENSMUSG00000116311.1) -326 ENSMUSG00000116311.1 ENSMUSG00000116311 ENSMUST00000229204 4930478M13Rik antisense Interval_58791 chr15 38088391 38088886 + 0 NA Intergenic Intergenic 9536 ENSMUSG00000115771.1 ENSMUSG00000115771 ENSMUST00000228698 Gm49312 bidirectional_promoter_lncRNA Interval_41921 chr13 4559163 4559659 + 0 NA Intergenic Intergenic -14664 ENSMUSG00000021207.9 ENSMUSG00000021207 ENSMUST00000137279 Akr1c21 protein_coding Interval_75707 chr17 70786870 70787180 + 0 NA exon (ENSMUSG00000003279.17, exon 12 of 15) protein_coding-exon (ENSMUSG00000003279.17, exon 12 of 15) 19034 ENSMUSG00000117231.1 ENSMUSG00000117231 ENSMUST00000233879 Gm41609 processed_transcript Interval_6638 chr1 118458807 118459930 + 0 NA promoter-TSS (ENSMUSG00000080542.1) snRNA-promoter-TSS (ENSMUSG00000080542.1) -103 ENSMUSG00000080542.1 ENSMUSG00000080542 ENSMUST00000116892 Gm22710 snRNA Interval_24103 chr11 30279085 30279928 + 0 NA exon (ENSMUSG00000073073.4, exon 2 of 2) processed_transcript-exon (ENSMUSG00000073073.4, exon 2 of 2) -11331 ENSMUSG00000020315.18 ENSMUSG00000020315 ENSMUST00000149117 Sptbn1 protein_coding Interval_3356 chr1 57377148 57378263 + 0 NA promoter-TSS (ENSMUSG00000038323.3) protein_coding-promoter-TSS (ENSMUSG00000038323.3) 65 ENSMUSG00000038323.3 ENSMUSG00000038323 ENSMUST00000187255 1700066M21Rik protein_coding Interval_2356 chr1 38384331 38384686 + 0 NA promoter-TSS (ENSMUSG00000087131.7) antisense-promoter-TSS (ENSMUSG00000087131.7) -441 ENSMUSG00000087131.7 ENSMUSG00000087131 ENSMUST00000131663 Gm16152 antisense Interval_117375 chr4 123315830 123317044 + 0 NA intron (ENSMUSG00000032726.12, intron 4 of 6) protein_coding-intron (ENSMUSG00000032726.12, intron 4 of 6) 7197 ENSMUSG00000076436.1 ENSMUSG00000076436 ENSMUST00000102640 Oxct2a protein_coding Interval_113106 chr4 48309546 48309894 + 0 NA TTS (ENSMUSG00000028344.12) protein_coding-TTS (ENSMUSG00000028344.12) 29960 ENSMUSG00000028344.12 ENSMUSG00000028344 ENSMUST00000129480 Invs protein_coding Interval_48158 chr13 96782955 96783270 + 0 NA intron (ENSMUSG00000109561.1, intron 6 of 24) protein_coding-intron (ENSMUSG00000109561.1, intron 3 of 19) -5182 ENSMUSG00000113879.1 ENSMUSG00000113879 ENSMUST00000222172 Gm48580 processed_pseudogene Interval_155757 chr8 36930186 36930454 + 0 NA intron (ENSMUSG00000031523.16, intron 2 of 2) protein_coding-intron (ENSMUSG00000031523.16, intron 2 of 3) 22116 ENSMUSG00000031523.16 ENSMUSG00000031523 ENSMUST00000179501 Dlc1 protein_coding Interval_45241 chr13 53443734 53443993 + 0 NA intron (ENSMUSG00000107008.3, intron 6 of 7) lincRNA-intron (ENSMUSG00000107008.3, intron 6 of 7) -29033 ENSMUSG00000107305.1 ENSMUSG00000107305 ENSMUST00000202970 Gm43262 lincRNA Interval_119653 chr4 139018364 139020140 + 0 NA intron (ENSMUSG00000041143.16, intron 7 of 12) protein_coding-intron (ENSMUSG00000041143.16, intron 7 of 15) 46343 ENSMUSG00000041143.16 ENSMUSG00000041143 ENSMUST00000124835 Tmco4 protein_coding Interval_123936 chr5 36742382 36742884 + 0 NA Intergenic Intergenic -5985 ENSMUSG00000107081.1 ENSMUSG00000107081 ENSMUST00000202047 Gm43701 antisense Interval_171 JH584304.1 90193 91195 + 0 NA NA NA NA NA Interval_159612 chr8 95788008 95788346 + 0 NA intron (ENSMUSG00000036550.16, intron 2 of 47) protein_coding-intron (ENSMUSG00000036550.16, intron 2 of 47) -9647 ENSMUSG00000110556.1 ENSMUSG00000110556 ENSMUST00000212863 Gm45762 TEC Interval_141892 chr6 135177196 135177467 + 0 NA intron (ENSMUSG00000042770.8, intron 1 of 1) protein_coding-intron (ENSMUSG00000042770.8, intron 1 of 1) -5226 ENSMUSG00000108248.1 ENSMUSG00000108248 ENSMUST00000203706 Gm34391 processed_pseudogene Interval_115276 chr4 95142786 95143833 + 0 NA intron (ENSMUSG00000087366.7, intron 3 of 4) antisense-intron (ENSMUSG00000087366.7, intron 2 of 4) -8431 ENSMUSG00000100189.1 ENSMUSG00000100189 ENSMUST00000191391 Gm28096 sense_intronic Interval_174683 chrX 162884875 162885494 + 0 NA intron (ENSMUSG00000031357.3, intron 1 of 8) protein_coding-intron (ENSMUSG00000031357.3, intron 1 of 8) 9970 ENSMUSG00000081917.1 ENSMUSG00000081917 ENSMUST00000117703 Gm15209 processed_pseudogene Interval_52543 chr14 47395464 47395690 + 0 NA exon (ENSMUSG00000037544.14, exon 14 of 16) protein_coding-exon (ENSMUSG00000037544.14, exon 14 of 16) 10806 ENSMUSG00000037544.14 ENSMUSG00000037544 ENSMUST00000179392 Dlgap5 protein_coding Interval_160824 chr8 112853877 112854437 + 0 NA exon (ENSMUSG00000031772.17, exon 18 of 24) protein_coding-exon (ENSMUSG00000031772.17, exon 18 of 24) 80503 ENSMUSG00000031772.17 ENSMUSG00000031772 ENSMUST00000140753 Cntnap4 protein_coding Interval_43281 chr13 28692682 28693631 + 0 NA intron (ENSMUSG00000085936.7, intron 3 of 7) processed_transcript-intron (ENSMUSG00000085936.7, intron 3 of 5) 17717 ENSMUSG00000099158.1 ENSMUSG00000099158 ENSMUST00000184136 Mir6368 miRNA Interval_82793 chr18 77094549 77094768 + 0 NA intron (ENSMUSG00000025423.16, intron 1 of 13) protein_coding-intron (ENSMUSG00000025423.16, intron 1 of 12) 29413 ENSMUSG00000025423.16 ENSMUSG00000025423 ENSMUST00000168882 Pias2 protein_coding Interval_92948 chr2 68900647 68901008 + 0 NA intron (ENSMUSG00000027035.10, intron 1 of 10) protein_coding-intron (ENSMUSG00000027035.10, intron 1 of 9) -5176 ENSMUSG00000103747.1 ENSMUSG00000103747 ENSMUST00000192661 Gm38236 TEC Interval_75216 chr17 64778471 64778704 + 0 NA Intergenic Intergenic 11476 ENSMUSG00000117105.1 ENSMUSG00000117105 ENSMUST00000233348 Dreh lincRNA Interval_150125 chr7 107158177 107159004 + 0 NA Intergenic Intergenic 20263 ENSMUSG00000073896.5 ENSMUSG00000073896 ENSMUST00000098137 Olfr716 protein_coding Interval_157153 chr8 66495612 66496760 + 0 NA exon (ENSMUSG00000110500.1, exon 3 of 3) lincRNA-exon (ENSMUSG00000110500.1, exon 3 of 3) 1127 ENSMUSG00000110500.1 ENSMUSG00000110500 ENSMUST00000212782 Gm32568 lincRNA Interval_112174 chr4 35180237 35181293 + 0 NA Intergenic Intergenic 22210 ENSMUSG00000082762.1 ENSMUSG00000082762 ENSMUST00000121722 Gm12366 processed_pseudogene Interval_157137 chr8 66265713 66265949 + 0 NA intron (ENSMUSG00000036469.16, intron 1 of 5) protein_coding-intron (ENSMUSG00000036469.16, intron 1 of 5) 121704 ENSMUSG00000086156.1 ENSMUSG00000086156 ENSMUST00000132019 Gm15354 antisense Interval_23246 chr11 20873092 20874085 + 0 NA Intergenic Intergenic -25707 ENSMUSG00000064671.1 ENSMUSG00000064671 ENSMUST00000082737 Gm22807 snoRNA Interval_62143 chr15 88057747 88058846 + 0 NA Intergenic Intergenic -15448 ENSMUSG00000116350.1 ENSMUSG00000116350 ENSMUST00000230760 Gm35772 lincRNA Interval_51023 chr14 21636715 21637914 + 0 NA intron (ENSMUSG00000021767.19, intron 10 of 15) protein_coding-intron (ENSMUSG00000021767.19, intron 11 of 16) 65788 ENSMUSG00000063821.6 ENSMUSG00000063821 ENSMUST00000224735 Dupd1 protein_coding Interval_16742 chr10 67862119 67862708 + 0 NA Intergenic Intergenic 50022 ENSMUSG00000037855.15 ENSMUSG00000037855 ENSMUST00000138543 Zfp365 protein_coding Interval_52961 chr14 52313697 52317100 + 0 NA exon (ENSMUSG00000049532.11, exon 2 of 2) protein_coding-exon (ENSMUSG00000049532.11, exon 2 of 2) 925 ENSMUSG00000049532.11 ENSMUSG00000049532 ENSMUST00000058326 Sall2 protein_coding Interval_6128 chr1 97759637 97761108 + 0 NA intron (ENSMUSG00000040648.14, intron 1 of 26) protein_coding-intron (ENSMUSG00000040648.14, intron 2 of 27) -17027 ENSMUSG00000026333.14 ENSMUSG00000026333 ENSMUST00000189031 Gin1 protein_coding Interval_55952 chr14 103115092 103116455 + 0 NA promoter-TSS (ENSMUSG00000033004.16) protein_coding-promoter-TSS (ENSMUSG00000033004.16) -16267 ENSMUSG00000022124.15 ENSMUSG00000022124 ENSMUST00000123043 Fbxl3 protein_coding Interval_133239 chr5 150782845 150783343 + 0 NA exon (ENSMUSG00000034021.15, exon 24 of 35) protein_coding-exon (ENSMUSG00000034021.15, exon 24 of 35) 31001 ENSMUSG00000107048.1 ENSMUSG00000107048 ENSMUST00000200678 Gm43807 sense_intronic Interval_7294 chr1 128500358 128500624 + 0 NA Intergenic Intergenic -6059 ENSMUSG00000100152.1 ENSMUSG00000100152 ENSMUST00000188996 Gm29598 processed_pseudogene Interval_136976 chr6 65277485 65277907 + 0 NA Intergenic Intergenic -3552 ENSMUSG00000107630.1 ENSMUSG00000107630 ENSMUST00000203962 Gm44061 processed_pseudogene Interval_57152 chr15 7028143 7028367 + 0 NA Intergenic Intergenic 32218 ENSMUSG00000104334.1 ENSMUSG00000104334 ENSMUST00000192751 Gm38282 TEC Interval_156947 chr8 62118350 62118732 + 0 NA intron (ENSMUSG00000031635.14, intron 1 of 7) protein_coding-intron (ENSMUSG00000031635.14, intron 1 of 11) 4609 ENSMUSG00000031635.14 ENSMUSG00000031635 ENSMUST00000210799 Anxa10 protein_coding Interval_133348 chr6 3544225 3545265 + 0 NA intron (ENSMUSG00000001376.17, intron 12 of 26) protein_coding-intron (ENSMUSG00000001376.17, intron 12 of 27) -39069 ENSMUSG00000107094.1 ENSMUSG00000107094 ENSMUST00000202850 Gm43294 TEC Interval_117413 chr4 123571867 123573276 + 0 NA intron (ENSMUSG00000028649.21, intron 1 of 97) protein_coding-intron (ENSMUSG00000028649.21, intron 1 of 92) 41172 ENSMUSG00000028649.21 ENSMUSG00000028649 ENSMUST00000146000 Macf1 protein_coding Interval_67943 chr16 59956342 59956631 + 0 NA intron (ENSMUSG00000055540.15, intron 3 of 8) protein_coding-intron (ENSMUSG00000055540.15, intron 9 of 17) 317277 ENSMUSG00000116894.1 ENSMUSG00000116894 ENSMUST00000232302 4930547E14Rik processed_transcript Interval_20460 chr10 117738395 117739178 + 0 NA intron (ENSMUSG00000060181.6, intron 3 of 3) protein_coding-intron (ENSMUSG00000060181.6, intron 4 of 4) 6156 ENSMUSG00000060181.6 ENSMUSG00000060181 ENSMUST00000219482 Slc35e3 protein_coding Interval_155810 chr8 39021005 39022123 + 0 NA intron (ENSMUSG00000039530.17, intron 1 of 7) protein_coding-intron (ENSMUSG00000039530.17, intron 1 of 9) 15656 ENSMUSG00000039530.17 ENSMUSG00000039530 ENSMUST00000210890 Tusc3 protein_coding Interval_43194 chr13 25052310 25053627 + 0 NA Intergenic Intergenic 17909 ENSMUSG00000114228.1 ENSMUSG00000114228 ENSMUST00000224353 Gm47605 processed_pseudogene Interval_143343 chr7 5952914 5953270 + 0 NA Intergenic Intergenic 14124 ENSMUSG00000092271.1 ENSMUSG00000092271 ENSMUST00000173862 Vmn1r-ps46 processed_pseudogene Interval_58851 chr15 39180764 39181133 + 0 NA exon (ENSMUSG00000098021.2, exon 1 of 1) processed_pseudogene-exon (ENSMUSG00000098021.2, exon 1 of 1) 437 ENSMUSG00000098021.2 ENSMUSG00000098021 ENSMUST00000182394 Gm9522 processed_pseudogene Interval_90494 chr2 30796196 30796930 + 0 NA TTS (ENSMUSG00000044320.14) protein_coding-TTS (ENSMUSG00000044320.14) 7081 ENSMUSG00000044320.14 ENSMUSG00000044320 ENSMUST00000140168 1700001O22Rik protein_coding Interval_19995 chr10 111782244 111783005 + 0 NA exon (ENSMUSG00000112137.1, exon 3 of 3) lincRNA-exon (ENSMUSG00000112137.1, exon 3 of 3) 14846 ENSMUSG00000112706.1 ENSMUSG00000112706 ENSMUST00000219399 Gm46193 processed_pseudogene Interval_142973 chr6 147810746 147811191 + 0 NA Intergenic Intergenic -91517 ENSMUSG00000086019.1 ENSMUSG00000086019 ENSMUST00000126447 Gm15762 lincRNA Interval_152570 chr7 134699575 134700838 + 0 NA intron (ENSMUSG00000058325.6, intron 1 of 18) protein_coding-intron (ENSMUSG00000058325.6, intron 1 of 51) 29519 ENSMUSG00000058325.6 ENSMUSG00000058325 ENSMUST00000210121 Dock1 protein_coding Interval_93791 chr2 76926586 76926892 + 0 NA intron (ENSMUSG00000051747.15, intron 44 of 346) protein_coding-intron (ENSMUSG00000051747.15, intron 43 of 190) -89925 ENSMUSG00000051747.15 ENSMUSG00000051747 ENSMUST00000147048 Ttn protein_coding Interval_151508 chr7 123162815 123163131 + 0 NA TTS (ENSMUSG00000052707.8) protein_coding-TTS (ENSMUSG00000052707.8) -8673 ENSMUSG00000052707.8 ENSMUSG00000052707 ENSMUST00000206126 Tnrc6a protein_coding Interval_37739 chr12 71530480 71531056 + 0 NA intron (ENSMUSG00000113630.1, intron 3 of 5) lincRNA-intron (ENSMUSG00000113630.1, intron 3 of 5) 42483 ENSMUSG00000113630.1 ENSMUSG00000113630 ENSMUST00000220948 4930404H11Rik lincRNA Interval_35438 chr12 21752288 21753987 + 0 NA Intergenic Intergenic 23570 ENSMUSG00000091105.1 ENSMUSG00000091105 ENSMUST00000164169 Mrto4-ps2 processed_pseudogene Interval_44375 chr13 44418837 44420541 + 0 NA intron (ENSMUSG00000098107.1, intron 2 of 2) lincRNA-intron (ENSMUSG00000098107.1, intron 2 of 2) -20047 ENSMUSG00000098144.8 ENSMUSG00000098144 ENSMUST00000220639 1700029N11Rik lincRNA Interval_166865 chr9 63377046 63378417 + 0 NA exon (ENSMUSG00000058444.8, exon 1 of 22) protein_coding-exon (ENSMUSG00000058444.8, exon 1 of 22) 146 ENSMUSG00000058444.8 ENSMUSG00000058444 ENSMUST00000216999 Map2k5 protein_coding Interval_145165 chr7 30409492 30409743 + 0 NA Intergenic Intergenic -4235 ENSMUSG00000030579.10 ENSMUSG00000030579 ENSMUST00000208125 Tyrobp protein_coding Interval_121899 chr5 9313948 9314134 + 0 NA intron (ENSMUSG00000056004.16, intron 1 of 19) protein_coding-intron (ENSMUSG00000056004.16, intron 1 of 21) -39718 ENSMUSG00000086115.1 ENSMUSG00000086115 ENSMUST00000132957 Gm15733 processed_pseudogene Interval_142982 chr6 147999821 148000172 + 0 NA Intergenic Intergenic 47343 ENSMUSG00000086777.3 ENSMUSG00000086777 ENSMUST00000149815 Far2os2 antisense Interval_123082 chr5 29471990 29472448 + 0 NA TTS (ENSMUSG00000001566.9) protein_coding-TTS (ENSMUSG00000001566.9) 6251 ENSMUSG00000001566.9 ENSMUSG00000001566 ENSMUST00000001608 Mnx1 protein_coding Interval_14662 chr10 38264006 38264741 + 0 NA Intergenic Intergenic -47501 ENSMUSG00000111048.1 ENSMUSG00000111048 ENSMUST00000213786 Gm48173 processed_pseudogene Interval_42699 chr13 18153909 18154114 + 0 NA intron (ENSMUSG00000009734.18, intron 1 of 3) protein_coding-intron (ENSMUSG00000009734.18, intron 4 of 7) -53809 ENSMUSG00000113470.1 ENSMUSG00000113470 ENSMUST00000220795 4930448F12Rik lincRNA Interval_48330 chr13 98247411 98247669 + 0 NA exon (ENSMUSG00000041747.3, exon 13 of 13) protein_coding-exon (ENSMUSG00000041747.3, exon 13 of 13) 6617 ENSMUSG00000041747.3 ENSMUSG00000041747 ENSMUST00000224842 Utp15 protein_coding Interval_117089 chr4 119460264 119460985 + 0 NA intron (ENSMUSG00000070806.5, intron 2 of 2) protein_coding-intron (ENSMUSG00000070806.5, intron 2 of 2) 31885 ENSMUSG00000048899.8 ENSMUSG00000048899 ENSMUST00000126728 Rimkla protein_coding Interval_112132 chr4 34881157 34881656 + 0 NA intron (ENSMUSG00000039967.14, intron 1 of 7) protein_coding-intron (ENSMUSG00000039967.14, intron 1 of 7) 1524 ENSMUSG00000039967.14 ENSMUSG00000039967 ENSMUST00000047950 Zfp292 protein_coding Interval_73771 chr17 43473587 43474077 + 0 NA TTS (ENSMUSG00000023914.16) protein_coding-TTS (ENSMUSG00000023914.16) 19577 ENSMUSG00000064582.1 ENSMUSG00000064582 ENSMUST00000082648 Gm25135 snRNA Interval_118768 chr4 133612029 133612650 + 0 NA TTS (ENSMUSG00000037553.14) protein_coding-TTS (ENSMUSG00000037553.14) -10171 ENSMUSG00000047281.3 ENSMUSG00000047281 ENSMUST00000057311 Sfn protein_coding Interval_48875 chr13 104238010 104238237 + 0 NA promoter-TSS (ENSMUSG00000021714.15) protein_coding-promoter-TSS (ENSMUSG00000021714.15) 2248 ENSMUSG00000021714.15 ENSMUSG00000021714 ENSMUST00000224098 Cenpk protein_coding Interval_163485 chr9 21675646 21675840 + 0 NA intron (ENSMUSG00000032187.16, intron 25 of 33) protein_coding-intron (ENSMUSG00000032187.16, intron 25 of 33) -2170 ENSMUSG00000099192.1 ENSMUSG00000099192 ENSMUST00000184017 Gm27373 misc_RNA Interval_112956 chr4 46445253 46445816 + 0 NA Intergenic Intergenic -5368 ENSMUSG00000028333.10 ENSMUSG00000028333 ENSMUST00000102926 Anp32b protein_coding Interval_139954 chr6 113023431 113025089 + 0 NA Intergenic Intergenic 11674 ENSMUSG00000065309.1 ENSMUSG00000065309 ENSMUST00000083375 Gm23244 snRNA Interval_47897 chr13 94250895 94251641 + 0 NA intron (ENSMUSG00000021687.14, intron 2 of 8) protein_coding-intron (ENSMUSG00000021687.14, intron 2 of 8) -4710 ENSMUSG00000021687.14 ENSMUSG00000021687 ENSMUST00000138255 Scamp1 protein_coding Interval_108336 chr3 124320557 124321932 + 0 NA exon (ENSMUSG00000044528.5, exon 1 of 1) protein_coding-exon (ENSMUSG00000044528.5, exon 1 of 1) 389 ENSMUSG00000044528.5 ENSMUSG00000044528 ENSMUST00000058994 Tram1l1 protein_coding Interval_73995 chr17 45918679 45919323 + 0 NA Intergenic Intergenic 33655 ENSMUSG00000117048.1 ENSMUSG00000117048 ENSMUST00000233085 Gm41584 lincRNA Interval_152551 chr7 134263156 134264099 + 0 NA Intergenic Intergenic -31496 ENSMUSG00000054555.11 ENSMUSG00000054555 ENSMUST00000154144 Adam12 protein_coding Interval_57205 chr15 7686999 7687246 + 0 NA Intergenic Intergenic -16782 ENSMUSG00000103142.1 ENSMUSG00000103142 ENSMUST00000194645 Gm37743 TEC Interval_143443 chr7 6823812 6824868 + 0 NA intron (ENSMUSG00000051527.11, intron 2 of 7) protein_coding-intron (ENSMUSG00000051527.11, intron 2 of 7) 15339 ENSMUSG00000109456.1 ENSMUSG00000109456 ENSMUST00000208395 Gm44584 TEC Interval_94053 chr2 82907800 82908527 + 0 NA Intergenic Intergenic -35471 ENSMUSG00000075249.12 ENSMUSG00000075249 ENSMUST00000132967 Fsip2 protein_coding Interval_139384 chr6 99691731 99693787 + 0 NA promoter-TSS (ENSMUSG00000072875.2) protein_coding-promoter-TSS (ENSMUSG00000072875.2) 80 ENSMUSG00000072875.2 ENSMUSG00000072875 ENSMUST00000101122 Gpr27 protein_coding Interval_167679 chr9 71873875 71874555 + 0 NA intron (ENSMUSG00000032228.16, intron 13 of 19) protein_coding-intron (ENSMUSG00000032228.16, intron 13 of 19) -19012 ENSMUSG00000102143.1 ENSMUSG00000102143 ENSMUST00000195551 Gm38057 TEC Interval_88055 chr19 58511966 58512537 + 0 NA intron (ENSMUSG00000025090.9, intron 1 of 8) protein_coding-intron (ENSMUSG00000025090.9, intron 1 of 8) 258 ENSMUSG00000025090.9 ENSMUSG00000025090 ENSMUST00000069419 Ccdc172 protein_coding Interval_63727 chr15 103085517 103087264 + 0 NA Intergenic Intergenic 15721 ENSMUSG00000101356.1 ENSMUSG00000101356 ENSMUST00000188137 Gm28876 lincRNA Interval_26877 chr11 61239484 61239767 + 0 NA intron (ENSMUSG00000010025.19, intron 9 of 9) protein_coding-intron (ENSMUSG00000010025.19, intron 9 of 9) 11385 ENSMUSG00000010025.19 ENSMUSG00000010025 ENSMUST00000149298 Aldh3a2 protein_coding Interval_154339 chr8 14786825 14787742 + 0 NA intron (ENSMUSG00000047495.15, intron 8 of 14) protein_coding-intron (ENSMUSG00000047495.15, intron 8 of 14) -39856 ENSMUSG00000084945.1 ENSMUSG00000084945 ENSMUST00000155211 C030037F17Rik antisense Interval_58160 chr15 30074031 30074283 + 0 NA Intergenic Intergenic -21601 ENSMUSG00000065726.1 ENSMUSG00000065726 ENSMUST00000083792 Gm26163 snoRNA Interval_105208 chr3 83867870 83868323 + 0 NA Intergenic Intergenic -26329 ENSMUSG00000027995.10 ENSMUSG00000027995 ENSMUST00000029623 Tlr2 protein_coding Interval_97228 chr2 132384403 132385697 + 0 NA intron (ENSMUSG00000050558.13, intron 1 of 3) protein_coding-intron (ENSMUSG00000050558.13, intron 1 of 2) 371 ENSMUSG00000050558.13 ENSMUSG00000050558 ENSMUST00000145995 Prokr2 protein_coding Interval_13654 chr10 20517200 20519126 + 0 NA promoter-TSS (ENSMUSG00000092051.2) transcribed_processed_pseudogene-promoter-TSS (ENSMUSG00000092051.2) 1605 ENSMUSG00000092051.2 ENSMUSG00000092051 ENSMUST00000166792 Gm17229 transcribed_processed_pseudogene Interval_107384 chr3 107144742 107145002 + 0 NA Intergenic Intergenic -38272 ENSMUSG00000042861.7 ENSMUSG00000042861 ENSMUST00000169751 Kcna10 protein_coding Interval_132344 chr5 144334439 144334710 + 0 NA intron (ENSMUSG00000038859.7, intron 1 of 13) protein_coding-intron (ENSMUSG00000038859.7, intron 1 of 13) -23349 ENSMUSG00000104600.4 ENSMUSG00000104600 ENSMUST00000196370 Dmrt1i sense_intronic Interval_108549 chr3 128478613 128479249 + 0 NA Intergenic Intergenic -61441 ENSMUSG00000065248.1 ENSMUSG00000065248 ENSMUST00000083314 Gm22293 snoRNA Interval_140736 chr6 120947150 120947585 + 0 NA intron (ENSMUSG00000051586.17, intron 10 of 13) protein_coding-intron (ENSMUSG00000051586.17, intron 13 of 15) -4534 ENSMUSG00000108232.1 ENSMUSG00000108232 ENSMUST00000205062 Gm43916 antisense Interval_52017 chr14 34632751 34633922 + 0 NA Intergenic Intergenic -28371 ENSMUSG00000115575.1 ENSMUSG00000115575 ENSMUST00000227643 Gm49024 lincRNA Interval_130150 chr5 124545180 124545471 + 0 NA intron (ENSMUSG00000029390.13, intron 2 of 3) protein_coding-intron (ENSMUSG00000029390.13, intron 2 of 3) 4370 ENSMUSG00000029390.13 ENSMUSG00000029390 ENSMUST00000135464 Tmed2 protein_coding Interval_160611 chr8 111041980 111044608 + 0 NA TTS (ENSMUSG00000031960.14) protein_coding-TTS (ENSMUSG00000031960.14) -1270 ENSMUSG00000092671.1 ENSMUSG00000092671 ENSMUST00000174930 Gm24103 miRNA Interval_159252 chr8 92355635 92358393 + 0 NA promoter-TSS (ENSMUSG00000031736.11) processed_transcript-promoter-TSS (ENSMUSG00000031736.11) -611 ENSMUSG00000031737.11 ENSMUSG00000031737 ENSMUST00000034184 Irx5 protein_coding Interval_158484 chr8 83996475 83999020 + 0 NA promoter-TSS (ENSMUSG00000079003.3) protein_coding-promoter-TSS (ENSMUSG00000079003.3) -677 ENSMUSG00000079003.3 ENSMUSG00000079003 ENSMUST00000209606 Samd1 protein_coding Interval_5364 chr1 87906251 87906756 + 0 NA intron (ENSMUSG00000070738.10, intron 2 of 3) protein_coding-intron (ENSMUSG00000070738.10, intron 3 of 29) 8963 ENSMUSG00000103591.1 ENSMUSG00000103591 ENSMUST00000195720 Gm38365 TEC Interval_84552 chr19 12721778 12722552 + 0 NA promoter-TSS (ENSMUSG00000084981.7) antisense-promoter-TSS (ENSMUSG00000084981.7) -962 ENSMUSG00000084981.7 ENSMUSG00000084981 ENSMUST00000124184 Gm15962 antisense Interval_48175 chr13 96998837 96999882 + 0 NA Intergenic Intergenic 15940 ENSMUSG00000113934.1 ENSMUSG00000113934 ENSMUST00000222278 Gm48609 processed_pseudogene Interval_101481 chr2 181714837 181715867 + 0 NA promoter-TSS (ENSMUSG00000027584.17) protein_coding-promoter-TSS (ENSMUSG00000027584.17) 336 ENSMUSG00000027584.17 ENSMUSG00000027584 ENSMUST00000184127 Oprl1 protein_coding Interval_40288 chr12 103192573 103192814 + 0 NA Intergenic Intergenic 49435 ENSMUSG00000041669.15 ENSMUSG00000041669 ENSMUST00000155547 Prima1 protein_coding Interval_170621 chr9 109594959 109595188 + 0 NA Intergenic Intergenic -20849 ENSMUSG00000106495.1 ENSMUSG00000106495 ENSMUST00000198533 Gm42755 TEC Interval_66722 chr16 36628538 36628916 + 0 NA intron (ENSMUSG00000022901.13, intron 2 of 2) protein_coding-intron (ENSMUSG00000022901.13, intron 2 of 7) -24208 ENSMUSG00000022901.13 ENSMUSG00000022901 ENSMUST00000145506 Cd86 protein_coding Interval_141614 chr6 131353366 131354129 + 0 NA promoter-TSS (ENSMUSG00000032899.14) protein_coding-promoter-TSS (ENSMUSG00000032899.14) -150 ENSMUSG00000032899.14 ENSMUSG00000032899 ENSMUST00000204371 Styk1 protein_coding Interval_22412 chr11 9802378 9802867 + 0 NA Intergenic Intergenic -65001 ENSMUSG00000081629.1 ENSMUSG00000081629 ENSMUST00000117907 Eif3s6-ps1 processed_pseudogene Interval_114736 chr4 84624966 84625533 + 0 NA intron (ENSMUSG00000028487.18, intron 1 of 5) protein_coding-intron (ENSMUSG00000028487.18, intron 1 of 7) -72614 ENSMUSG00000081775.1 ENSMUSG00000081775 ENSMUST00000119869 Gm12420 processed_pseudogene Interval_139917 chr6 112717190 112717827 + 0 NA TTS (ENSMUSG00000030257.16) protein_coding-TTS (ENSMUSG00000030257.16) -20875 ENSMUSG00000030254.16 ENSMUSG00000030254 ENSMUST00000135092 Rad18 protein_coding Interval_137188 chr6 69418118 69418660 + 0 NA promoter-TSS (ENSMUSG00000076552.3) IG_V_gene-promoter-TSS (ENSMUSG00000076552.3) -934 ENSMUSG00000076552.3 ENSMUSG00000076552 ENSMUST00000103353 Igkv4-61 IG_V_gene Interval_173659 chrX 101618078 101618290 + 0 NA Intergenic Intergenic -21956 ENSMUSG00000034160.13 ENSMUSG00000034160 ENSMUST00000147635 Ogt protein_coding Interval_13464 chr10 18445938 18446749 + 0 NA intron (ENSMUSG00000039835.16, intron 1 of 3) protein_coding-intron (ENSMUSG00000039835.16, intron 1 of 6) 99721 ENSMUSG00000019853.6 ENSMUSG00000019853 ENSMUST00000214548 Hebp2 protein_coding Interval_148950 chr7 90265273 90266046 + 0 NA promoter-TSS (ENSMUSG00000030617.13) protein_coding-promoter-TSS (ENSMUSG00000030617.13) 118 ENSMUSG00000030617.13 ENSMUSG00000030617 ENSMUST00000207819 Ccdc83 protein_coding Interval_63074 chr15 98971243 98972327 + 0 NA Intergenic Intergenic -11563 ENSMUSG00000097587.2 ENSMUSG00000097587 ENSMUST00000180490 4930578M01Rik processed_transcript Interval_17278 chr10 75536753 75537291 + 0 NA exon (ENSMUSG00000020180.10, exon 4 of 4) protein_coding-exon (ENSMUSG00000020180.10, exon 4 of 4) 16872 ENSMUSG00000046807.10 ENSMUSG00000046807 ENSMUST00000051129 Lrrc75b protein_coding Interval_93471 chr2 73328833 73329335 + 0 NA intron (ENSMUSG00000008226.14, intron 4 of 4) protein_coding-intron (ENSMUSG00000008226.14, intron 5 of 7) 16425 ENSMUSG00000008226.14 ENSMUSG00000008226 ENSMUST00000123621 Scrn3 protein_coding Interval_110419 chr3 157931424 157932597 + 0 NA intron (ENSMUSG00000028177.13, intron 2 of 2) antisense-intron (ENSMUSG00000028177.13, intron 3 of 4) 6790 ENSMUSG00000028177.13 ENSMUSG00000028177 ENSMUST00000196971 1810013D15Rik antisense Interval_44062 chr13 40652736 40653342 + 0 NA Intergenic Intergenic -8390 ENSMUSG00000114322.1 ENSMUSG00000114322 ENSMUST00000225346 Gm47041 TEC Interval_128873 chr5 115790154 115791383 + 0 NA Intergenic Intergenic 11391 ENSMUSG00000083833.4 ENSMUSG00000083833 ENSMUST00000118829 Gm13841 processed_pseudogene Interval_174572 chrX 159247364 159247887 + 0 NA intron (ENSMUSG00000031309.15, intron 2 of 24) protein_coding-intron (ENSMUSG00000031309.15, intron 2 of 24) -28651 ENSMUSG00000031309.15 ENSMUSG00000031309 ENSMUST00000149939 Rps6ka3 protein_coding Interval_143533 chr7 12203532 12204730 + 0 NA TTS (ENSMUSG00000115744.1) protein_coding-TTS (ENSMUSG00000115744.1) 2222 ENSMUSG00000109630.1 ENSMUSG00000109630 ENSMUST00000210883 Gm45364 processed_pseudogene Interval_148564 chr7 82710013 82710355 + 0 NA intron (ENSMUSG00000038563.14, intron 15 of 19) protein_coding-intron (ENSMUSG00000038563.14, intron 15 of 19) -5408 ENSMUSG00000108984.1 ENSMUSG00000108984 ENSMUST00000208664 Gm44916 TEC Interval_5669 chr1 90743931 90744372 + 0 NA Intergenic Intergenic 68990 ENSMUSG00000056128.3 ENSMUSG00000056128 ENSMUST00000070048 Gm9991 lincRNA Interval_78642 chr18 16179452 16180804 + 0 NA Intergenic Intergenic -35678 ENSMUSG00000117532.1 ENSMUSG00000117532 ENSMUST00000234268 Gm50076 lincRNA Interval_167270 chr9 66936743 66937394 + 0 NA Intergenic Intergenic -9098 ENSMUSG00000036781.13 ENSMUSG00000036781 ENSMUST00000123931 Rps27l protein_coding Interval_132906 chr5 148660965 148661300 + 0 NA Intergenic Intergenic -47488 ENSMUSG00000107098.1 ENSMUSG00000107098 ENSMUST00000202418 Gm29815 processed_pseudogene Interval_106442 chr3 96312313 96313142 + 0 NA Intergenic Intergenic -15698 ENSMUSG00000095701.1 ENSMUSG00000095701 ENSMUST00000102024 Gm24830 snRNA Interval_22515 chr11 11342745 11343340 + 0 NA intron (ENSMUSG00000020193.3, intron 7 of 7) protein_coding-intron (ENSMUSG00000020193.3, intron 7 of 7) 30609 ENSMUSG00000082875.1 ENSMUSG00000082875 ENSMUST00000117333 Gm12598 processed_pseudogene Interval_86222 chr19 37890974 37891474 + 0 NA Intergenic Intergenic 20954 ENSMUSG00000118115.1 ENSMUSG00000118115 ENSMUST00000237198 Gm4757 processed_pseudogene Interval_15799 chr10 57041520 57041878 + 0 NA Intergenic Intergenic -59467 ENSMUSG00000112327.1 ENSMUSG00000112327 ENSMUST00000220080 Gm36827 lincRNA Interval_164545 chr9 38278398 38278709 + 0 NA Intergenic Intergenic 10702 ENSMUSG00000096427.3 ENSMUSG00000096427 ENSMUST00000093864 Olfr895 protein_coding Interval_39212 chr12 85867267 85867610 + 0 NA exon (ENSMUSG00000012609.19, exon 10 of 10) protein_coding-exon (ENSMUSG00000012609.19, exon 10 of 10) -45188 ENSMUSG00000021252.11 ENSMUSG00000021252 ENSMUST00000142331 Erg28 protein_coding Interval_35100 chr12 17313850 17315217 + 0 NA exon (ENSMUSG00000020566.19, exon 4 of 7) protein_coding-exon (ENSMUSG00000020566.19, exon 4 of 7) 10180 ENSMUSG00000020566.19 ENSMUSG00000020566 ENSMUST00000143131 Atp6v1c2 protein_coding Interval_14201 chr10 28730265 28730573 + 0 NA intron (ENSMUSG00000049109.15, intron 2 of 2) protein_coding-intron (ENSMUSG00000049109.15, intron 2 of 5) -7006 ENSMUSG00000049109.15 ENSMUSG00000049109 ENSMUST00000219119 Themis protein_coding Interval_105022 chr3 79850870 79851134 + 0 NA intron (ENSMUSG00000027956.11, intron 1 of 1) protein_coding-intron (ENSMUSG00000027956.11, intron 1 of 1) -8090 ENSMUSG00000027956.11 ENSMUSG00000027956 ENSMUST00000194338 Tmem144 protein_coding Interval_131634 chr5 138974849 138975592 + 0 NA TTS (ENSMUSG00000025856.15) protein_coding-TTS (ENSMUSG00000025856.15) 19061 ENSMUSG00000025856.15 ENSMUSG00000025856 ENSMUST00000132051 Pdgfa protein_coding Interval_101012 chr2 174255749 174256074 + 0 NA Intergenic Intergenic 7983 ENSMUSG00000098467.1 ENSMUSG00000098467 ENSMUST00000184218 Gm27591 miRNA Interval_137381 chr6 71823188 71824266 + 0 NA promoter-TSS (ENSMUSG00000052962.3) protein_coding-promoter-TSS (ENSMUSG00000052962.3) 3242 ENSMUSG00000052962.3 ENSMUSG00000052962 ENSMUST00000205758 Mrpl35 protein_coding Interval_46354 chr13 64167405 64167706 + 0 NA intron (ENSMUSG00000021476.9, intron 1 of 2) protein_coding-intron (ENSMUSG00000021476.9, intron 1 of 7) 14974 ENSMUSG00000114165.1 ENSMUSG00000114165 ENSMUST00000221450 Gm47513 TEC Interval_27853 chr11 70395648 70396223 + 0 NA intron (ENSMUSG00000018921.11, intron 13 of 16) protein_coding-intron (ENSMUSG00000018921.11, intron 13 of 16) 14096 ENSMUSG00000018921.11 ENSMUSG00000018921 ENSMUST00000135148 Pelp1 protein_coding Interval_24567 chr11 34515374 34515753 + 0 NA intron (ENSMUSG00000020143.15, intron 22 of 26) protein_coding-intron (ENSMUSG00000020143.15, intron 22 of 51) 200805 ENSMUSG00000069911.11 ENSMUSG00000069911 ENSMUST00000093192 Insyn2b protein_coding Interval_65168 chr16 20316151 20317470 + 0 NA promoter-TSS (ENSMUSG00000022818.13) protein_coding-promoter-TSS (ENSMUSG00000022818.13) -60 ENSMUSG00000022818.13 ENSMUSG00000022818 ENSMUST00000182669 Cyp2ab1 protein_coding Interval_129186 chr5 118052186 118052646 + 0 NA intron (ENSMUSG00000029359.13, intron 2 of 7) protein_coding-intron (ENSMUSG00000029359.13, intron 2 of 7) -12944 ENSMUSG00000029360.3 ENSMUSG00000029360 ENSMUST00000031305 Gm9754 antisense Interval_31 GL456211.1 167768 168554 + 0 NA NA NA NA NA Interval_68092 chr16 64961014 64962208 + 0 NA intron (ENSMUSG00000050783.5, intron 2 of 2) protein_coding-intron (ENSMUSG00000050783.5, intron 2 of 2) -42527 ENSMUSG00000116811.1 ENSMUSG00000116811 ENSMUST00000232275 Gm16385 processed_pseudogene Interval_50593 chr14 16284025 16284293 + 0 NA TTS (ENSMUSG00000021785.8) protein_coding-TTS (ENSMUSG00000021785.8) 10164 ENSMUSG00000114842.1 ENSMUSG00000114842 ENSMUST00000224181 Gm47797 TEC Interval_5287 chr1 87251921 87252169 + 0 NA TTS (ENSMUSG00000088318.1) snRNA-TTS (ENSMUSG00000088318.1) 897 ENSMUSG00000088318.1 ENSMUSG00000088318 ENSMUST00000157693 Gm26187 snRNA Interval_48011 chr13 95108863 95109131 + 0 NA intron (ENSMUSG00000021684.17, intron 1 of 20) protein_coding-intron (ENSMUSG00000021684.17, intron 2 of 20) 84696 ENSMUSG00000113070.1 ENSMUSG00000113070 ENSMUST00000220923 Gm48420 antisense Interval_173967 chrX 118068550 118068793 + 0 NA Intergenic Intergenic 52701 ENSMUSG00000081268.1 ENSMUSG00000081268 ENSMUST00000117853 Gm14909 processed_pseudogene Interval_104635 chr3 68997008 68997211 + 0 NA intron (ENSMUSG00000027778.15, intron 1 of 19) protein_coding-intron (ENSMUSG00000027778.15, intron 1 of 19) 7416 ENSMUSG00000027778.15 ENSMUSG00000027778 ENSMUST00000192467 Ift80 protein_coding Interval_153746 chr8 6100863 6101160 + 0 NA Intergenic Intergenic 66144 ENSMUSG00000109518.1 ENSMUSG00000109518 ENSMUST00000208320 Gm44843 TEC Interval_122381 chr5 21836045 21836349 + 0 NA intron (ENSMUSG00000029015.9, intron 5 of 13) protein_coding-intron (ENSMUSG00000029015.9, intron 7 of 19) -15680 ENSMUSG00000029015.9 ENSMUSG00000029015 ENSMUST00000150012 Slc26a5 protein_coding Interval_136950 chr6 65042238 65043950 + 0 NA promoter-TSS (ENSMUSG00000029920.9) protein_coding-promoter-TSS (ENSMUSG00000029920.9) 427 ENSMUSG00000029920.9 ENSMUSG00000029920 ENSMUST00000203104 Smarcad1 protein_coding Interval_87385 chr19 48231618 48233159 + 0 NA intron (ENSMUSG00000063434.6, intron 1 of 26) protein_coding-intron (ENSMUSG00000063434.6, intron 1 of 26) 8257 ENSMUSG00000089004.1 ENSMUSG00000089004 ENSMUST00000158379 Gm23857 rRNA Interval_153742 chr8 6027437 6028425 + 0 NA Intergenic Intergenic -6936 ENSMUSG00000109518.1 ENSMUSG00000109518 ENSMUST00000208320 Gm44843 TEC Interval_103672 chr3 51519806 51520257 + 0 NA exon (ENSMUSG00000037111.9, exon 8 of 8) protein_coding-exon (ENSMUSG00000037111.9, exon 8 of 8) 16616 ENSMUSG00000037111.9 ENSMUSG00000037111 ENSMUST00000194828 Setd7 protein_coding Interval_72315 chr17 29159191 29160571 + 0 NA promoter-TSS (ENSMUSG00000024008.16) protein_coding-promoter-TSS (ENSMUSG00000024008.16) -376 ENSMUSG00000024008.16 ENSMUSG00000024008 ENSMUST00000126755 Cpne5 protein_coding Interval_41033 chr12 110710379 110711917 + 0 NA Intergenic Intergenic -8420 ENSMUSG00000021270.13 ENSMUSG00000021270 ENSMUST00000149189 Hsp90aa1 protein_coding Interval_109845 chr3 148898853 148900243 + 0 NA intron (ENSMUSG00000028184.12, intron 2 of 19) protein_coding-intron (ENSMUSG00000028184.12, intron 2 of 2) -89604 ENSMUSG00000104786.1 ENSMUSG00000104786 ENSMUST00000196445 Gm43573 antisense Interval_170403 chr9 107698328 107699441 + 0 NA intron (ENSMUSG00000034684.12, intron 2 of 16) protein_coding-intron (ENSMUSG00000034684.12, intron 2 of 17) -14123 ENSMUSG00000034684.12 ENSMUSG00000034684 ENSMUST00000195023 Sema3f protein_coding Interval_68612 chr16 81329593 81329887 + 0 NA intron (ENSMUSG00000022762.18, intron 1 of 8) protein_coding-intron (ENSMUSG00000022762.18, intron 1 of 15) 39578 ENSMUSG00000116735.1 ENSMUSG00000116735 ENSMUST00000231935 Gm49555 TEC Interval_140773 chr6 121200973 121202429 + 0 NA Intergenic Intergenic -3518 ENSMUSG00000107915.1 ENSMUSG00000107915 ENSMUST00000205150 Gm44014 TEC Interval_13109 chr10 11467877 11468119 + 0 NA Intergenic Intergenic -37298 ENSMUSG00000111949.1 ENSMUSG00000111949 ENSMUST00000219639 Gm48679 processed_pseudogene Interval_120790 chr4 150659619 150660513 + 0 NA Intergenic Intergenic -15977 ENSMUSG00000039838.11 ENSMUSG00000039838 ENSMUST00000147706 Slc45a1 protein_coding Interval_14006 chr10 25415061 25415401 + 0 NA TTS (ENSMUSG00000112445.1) processed_pseudogene-TTS (ENSMUSG00000112445.1) 954 ENSMUSG00000112445.1 ENSMUSG00000112445 ENSMUST00000219193 Gm47830 processed_pseudogene Interval_166717 chr9 62230412 62231643 + 0 NA Intergenic Intergenic -10643 ENSMUSG00000110826.1 ENSMUSG00000110826 ENSMUST00000217557 Gm47262 lincRNA Interval_126030 chr5 76964385 76964623 + 0 NA exon (ENSMUSG00000029247.17, exon 7 of 9) protein_coding-exon (ENSMUSG00000029247.17, exon 7 of 9) -1653 ENSMUSG00000029247.17 ENSMUSG00000029247 ENSMUST00000154688 Paics protein_coding Interval_85231 chr19 24035918 24036173 + 0 NA Intergenic Intergenic -28748 ENSMUSG00000096796.1 ENSMUSG00000096796 ENSMUST00000178667 1700021P04Rik lincRNA Interval_100800 chr2 172593456 172594879 + 0 NA Intergenic Intergenic 43176 ENSMUSG00000028640.11 ENSMUSG00000028640 ENSMUST00000142633 Tfap2c protein_coding Interval_151412 chr7 122189456 122190174 + 0 NA Intergenic Intergenic -3608 ENSMUSG00000030866.8 ENSMUSG00000030866 ENSMUST00000033153 Ern2 protein_coding Interval_22478 chr11 10911129 10912306 + 0 NA Intergenic Intergenic -204768 ENSMUSG00000050830.17 ENSMUSG00000050830 ENSMUST00000154155 Vwc2 protein_coding Interval_161109 chr8 117516945 117517950 + 0 NA intron (ENSMUSG00000034330.10, intron 2 of 32) protein_coding-intron (ENSMUSG00000034330.10, intron 2 of 32) 19156 ENSMUSG00000034330.10 ENSMUSG00000034330 ENSMUST00000081232 Plcg2 protein_coding Interval_124191 chr5 39625167 39625571 + 0 NA intron (ENSMUSG00000051022.7, intron 2 of 2) protein_coding-intron (ENSMUSG00000051022.7, intron 1 of 1) -15025 ENSMUSG00000107134.1 ENSMUSG00000107134 ENSMUST00000200697 Gm42528 TEC Interval_97641 chr2 141580232 141580482 + 0 NA intron (ENSMUSG00000068205.14, intron 1 of 13) protein_coding-intron (ENSMUSG00000068205.14, intron 6 of 17) -60133 ENSMUSG00000065347.1 ENSMUSG00000065347 ENSMUST00000083413 Gm25583 snRNA Interval_133077 chr5 149687403 149687651 + 0 NA intron (ENSMUSG00000051950.10, intron 1 of 14) protein_coding-intron (ENSMUSG00000051950.10, intron 1 of 14) -26304 ENSMUSG00000080002.2 ENSMUSG00000080002 ENSMUST00000116118 Gm5566 processed_pseudogene Interval_111882 chr4 32227163 32228297 + 0 NA Intergenic Intergenic 20582 ENSMUSG00000083564.1 ENSMUSG00000083564 ENSMUST00000118175 Gm11929 processed_pseudogene Interval_8320 chr1 137303597 137304009 + 0 NA Intergenic Intergenic 22039 ENSMUSG00000102738.1 ENSMUSG00000102738 ENSMUST00000191810 1700006P03Rik TEC Interval_6805 chr1 119648318 119649365 + 0 NA promoter-TSS (ENSMUSG00000026383.14) protein_coding-promoter-TSS (ENSMUSG00000026383.14) -17172 ENSMUSG00000102687.1 ENSMUSG00000102687 ENSMUST00000192036 Gm37219 TEC Interval_123304 chr5 31251183 31252458 + 0 NA promoter-TSS (ENSMUSG00000029149.14) protein_coding-promoter-TSS (ENSMUSG00000029149.14) -516 ENSMUSG00000029149.14 ENSMUSG00000029149 ENSMUST00000201672 Krtcap3 protein_coding Interval_55342 chr14 84016924 84017525 + 0 NA Intergenic Intergenic -33261 ENSMUSG00000115282.1 ENSMUSG00000115282 ENSMUST00000227519 Gm49055 processed_pseudogene Interval_29276 chr11 82599694 82600598 + 0 NA Intergenic Intergenic -3967 ENSMUSG00000065201.1 ENSMUSG00000065201 ENSMUST00000083267 Gm24612 snRNA Interval_159891 chr8 104759747 104759934 + 0 NA TTS (ENSMUSG00000110639.1) transcribed_unprocessed_pseudogene-TTS (ENSMUSG00000110639.1) 4061 ENSMUSG00000110639.1 ENSMUSG00000110639 ENSMUST00000159332 Gm6831 transcribed_unprocessed_pseudogene Interval_111933 chr4 32655860 32657627 + 0 NA promoter-TSS (ENSMUSG00000058006.12) protein_coding-promoter-TSS (ENSMUSG00000058006.12) -376 ENSMUSG00000058006.12 ENSMUSG00000058006 ENSMUST00000124361 Mdn1 protein_coding Interval_29234 chr11 81879672 81880323 + 0 NA intron (ENSMUSG00000020703.3, intron 2 of 4) protein_coding-intron (ENSMUSG00000020703.3, intron 2 of 4) 19324 ENSMUSG00000020703.3 ENSMUSG00000020703 ENSMUST00000021044 5530401A14Rik protein_coding Interval_173261 chrX 75733518 75735588 + 0 NA intron (ENSMUSG00000087396.7, intron 2 of 3) processed_transcript-intron (ENSMUSG00000087396.7, intron 2 of 3) 10881 ENSMUSG00000081996.1 ENSMUSG00000081996 ENSMUST00000117092 Gm7153 processed_pseudogene Interval_49032 chr13 107101657 107102052 + 0 NA Intergenic Intergenic 38161 ENSMUSG00000114311.1 ENSMUSG00000114311 ENSMUST00000224729 Gm31452 lincRNA Interval_146197 chr7 44640876 44642306 + 0 NA intron (ENSMUSG00000030739.18, intron 2 of 25) protein_coding-intron (ENSMUSG00000030739.18, intron 11 of 41) -3837 ENSMUSG00000109352.1 ENSMUSG00000109352 ENSMUST00000209087 Gm18256 processed_pseudogene Interval_123185 chr5 30470158 30471133 + 0 NA intron (ENSMUSG00000029182.10, intron 1 of 3) protein_coding-intron (ENSMUSG00000029182.10, intron 1 of 3) 4590 ENSMUSG00000029182.10 ENSMUSG00000029182 ENSMUST00000114743 Fam166c protein_coding Interval_47513 chr13 86053817 86054920 + 0 NA Intergenic Intergenic -8021 ENSMUSG00000017778.14 ENSMUSG00000017778 ENSMUST00000017922 Cox7c protein_coding Interval_27088 chr11 62798082 62798480 + 0 NA Intergenic Intergenic -8860 ENSMUSG00000047342.17 ENSMUSG00000047342 ENSMUST00000149215 Zfp286 protein_coding Interval_52686 chr14 48589834 48591450 + 0 NA promoter-TSS (ENSMUSG00000115636.1) lincRNA-promoter-TSS (ENSMUSG00000115636.1) 43 ENSMUSG00000115636.1 ENSMUSG00000115636 ENSMUST00000228323 Gm49120 lincRNA Interval_17355 chr10 76043617 76044235 + 0 NA TTS (ENSMUSG00000049764.8) protein_coding-TTS (ENSMUSG00000049764.8) 11276 ENSMUSG00000049764.8 ENSMUSG00000049764 ENSMUST00000061617 Zfp280b protein_coding Interval_118676 chr4 133144656 133145140 + 0 NA intron (ENSMUSG00000028868.13, intron 1 of 8) protein_coding-intron (ENSMUSG00000028868.13, intron 1 of 8) 14358 ENSMUSG00000028868.13 ENSMUSG00000028868 ENSMUST00000136637 Wasf2 protein_coding Interval_54753 chr14 74748228 74748491 + 0 NA intron (ENSMUSG00000021996.16, intron 7 of 7) protein_coding-intron (ENSMUSG00000021996.16, intron 8 of 8) 16040 ENSMUSG00000021996.16 ENSMUSG00000021996 ENSMUST00000176726 Esd protein_coding Interval_139534 chr6 100850642 100851477 + 0 NA intron (ENSMUSG00000052144.8, intron 2 of 8) protein_coding-intron (ENSMUSG00000052144.8, intron 2 of 8) -1426 ENSMUSG00000052144.8 ENSMUSG00000052144 ENSMUST00000203067 Ppp4r2 protein_coding Interval_10365 chr1 170039541 170039839 + 0 NA intron (ENSMUSG00000026674.9, intron 2 of 17) protein_coding-intron (ENSMUSG00000026674.9, intron 2 of 17) 70238 ENSMUSG00000097503.2 ENSMUSG00000097503 ENSMUST00000193930 3110045C21Rik antisense Interval_80902 chr18 50022344 50022789 + 0 NA intron (ENSMUSG00000062210.13, intron 1 of 1) protein_coding-intron (ENSMUSG00000062210.13, intron 1 of 1) -24174 ENSMUSG00000062210.13 ENSMUSG00000062210 ENSMUST00000148159 Tnfaip8 protein_coding Interval_46098 chr13 61710602 61711348 + 0 NA exon (ENSMUSG00000061330.8, exon 2 of 2) processed_pseudogene-exon (ENSMUSG00000061330.8, exon 2 of 2) 396 ENSMUSG00000061330.8 ENSMUSG00000061330 ENSMUST00000077163 Gm6436 processed_pseudogene Interval_24378 chr11 32743752 32744296 + 0 NA intron (ENSMUSG00000020271.17, intron 12 of 12) protein_coding-intron (ENSMUSG00000020271.17, intron 13 of 13) 31615 ENSMUSG00000098054.1 ENSMUSG00000098054 ENSMUST00000182196 Gm8192 processed_pseudogene Interval_46257 chr13 63079386 63081036 + 0 NA intron (ENSMUSG00000021458.17, intron 1 of 7) protein_coding-intron (ENSMUSG00000021458.17, intron 4 of 15) -53840 ENSMUSG00000113257.1 ENSMUSG00000113257 ENSMUST00000223302 Gm30409 sense_intronic Interval_8373 chr1 138418624 138418888 + 0 NA Intergenic Intergenic 41492 ENSMUSG00000101793.1 ENSMUSG00000101793 ENSMUST00000190286 Gm28500 processed_pseudogene Interval_104977 chr3 79455134 79455462 + 0 NA TTS (ENSMUSG00000061175.12) protein_coding-TTS (ENSMUSG00000061175.12) 76578 ENSMUSG00000061175.12 ENSMUSG00000061175 ENSMUST00000139171 Fnip2 protein_coding Interval_140887 chr6 122602089 122602902 + 0 NA promoter-TSS (ENSMUSG00000040613.14) protein_coding-promoter-TSS (ENSMUSG00000040613.14) -2057 ENSMUSG00000040613.14 ENSMUSG00000040613 ENSMUST00000204035 Apobec1 protein_coding Interval_18505 chr10 86793104 86794343 + 0 NA intron (ENSMUSG00000054027.8, intron 1 of 13) protein_coding-intron (ENSMUSG00000054027.8, intron 1 of 13) 29751 ENSMUSG00000112743.1 ENSMUSG00000112743 ENSMUST00000218802 Gm49358 protein_coding Interval_48249 chr13 97438356 97439772 + 0 NA intron (ENSMUSG00000078952.9, intron 1 of 1) lincRNA-intron (ENSMUSG00000078952.9, intron 1 of 1) 20013 ENSMUSG00000098238.1 ENSMUSG00000098238 ENSMUST00000183250 Gm8756 processed_pseudogene Interval_13113 chr10 11498184 11498594 + 0 NA Intergenic Intergenic -6907 ENSMUSG00000111949.1 ENSMUSG00000111949 ENSMUST00000219639 Gm48679 processed_pseudogene Interval_4274 chr1 72312780 72314072 + 0 NA intron (ENSMUSG00000026187.9, intron 3 of 20) protein_coding-intron (ENSMUSG00000026187.9, intron 3 of 20) 5999 ENSMUSG00000026187.9 ENSMUSG00000026187 ENSMUST00000027379 Xrcc5 protein_coding Interval_99374 chr2 160407682 160407910 + 0 NA Intergenic Intergenic -40731 ENSMUSG00000074622.4 ENSMUSG00000074622 ENSMUST00000099126 Mafb protein_coding Interval_92724 chr2 64265662 64265921 + 0 NA Intergenic Intergenic 128069 ENSMUSG00000087702.1 ENSMUSG00000087702 ENSMUST00000142353 Gm13575 lincRNA Interval_143608 chr7 13111961 13112272 + 0 NA intron (ENSMUSG00000070816.3, intron 1 of 2) protein_coding-intron (ENSMUSG00000070816.3, intron 1 of 1) 7800 ENSMUSG00000070816.3 ENSMUSG00000070816 ENSMUST00000094828 Vmn1r86 protein_coding Interval_15672 chr10 53389398 53389903 + 0 NA Intergenic Intergenic -9703 ENSMUSG00000038594.9 ENSMUSG00000038594 ENSMUST00000218596 Cep85l protein_coding Interval_64627 chr16 13747969 13751177 + 0 NA Intergenic Intergenic -4993 ENSMUSG00000118559.2 ENSMUSG00000118559 ENSMUST00000239037 A930007A09Rik protein_coding Interval_3632 chr1 60123676 60124014 + 0 NA intron (ENSMUSG00000026017.13, intron 3 of 14) protein_coding-intron (ENSMUSG00000026017.13, intron 2 of 13) 6590 ENSMUSG00000082609.1 ENSMUSG00000082609 ENSMUST00000118718 Gm15464 processed_pseudogene Interval_9871 chr1 163570551 163570872 + 0 NA Intergenic Intergenic -36666 ENSMUSG00000101869.1 ENSMUSG00000101869 ENSMUST00000185992 Gm29500 lincRNA Interval_28045 chr11 72440739 72442246 + 0 NA exon (ENSMUSG00000040463.16, exon 1 of 26) protein_coding-exon (ENSMUSG00000040463.16, exon 1 of 26) 135 ENSMUSG00000040463.16 ENSMUSG00000040463 ENSMUST00000144923 Mybbp1a protein_coding Interval_6343 chr1 106102554 106102768 + 0 NA Intergenic Intergenic 12593 ENSMUSG00000097612.1 ENSMUSG00000097612 ENSMUST00000180947 Gm26509 processed_pseudogene Interval_123250 chr5 30900345 30900533 + 0 NA TTS (ENSMUSG00000107201.1) TEC-TTS (ENSMUSG00000107201.1) 3139 ENSMUSG00000107201.1 ENSMUSG00000107201 ENSMUST00000202893 5930420M18Rik TEC Interval_49016 chr13 106936273 106937541 + 0 NA promoter-TSS (ENSMUSG00000042590.17) protein_coding-promoter-TSS (ENSMUSG00000042590.17) 8622 ENSMUSG00000114572.1 ENSMUSG00000114572 ENSMUST00000225875 Gm48457 processed_pseudogene Interval_21797 chr11 4414227 4414546 + 0 NA intron (ENSMUSG00000020419.11, intron 7 of 10) protein_coding-intron (ENSMUSG00000020419.11, intron 8 of 11) 12876 ENSMUSG00000020419.11 ENSMUSG00000020419 ENSMUST00000124249 Hormad2 protein_coding Interval_81619 chr18 62188892 62189428 + 0 NA Intergenic Intergenic 9034 ENSMUSG00000054589.1 ENSMUSG00000054589 ENSMUST00000067743 Gm9949 lincRNA Interval_58652 chr15 36826739 36828364 + 0 NA Intergenic Intergenic -15265 ENSMUSG00000115750.1 ENSMUSG00000115750 ENSMUST00000226620 Gm49282 lincRNA Interval_21734 chr11 4017079 4018401 + 0 NA Intergenic Intergenic -13725 ENSMUSG00000019368.13 ENSMUSG00000019368 ENSMUST00000134482 Sec14l4 protein_coding Interval_170992 chr9 113567672 113567942 + 0 NA intron (ENSMUSG00000109890.2, intron 1 of 4) lincRNA-intron (ENSMUSG00000109890.2, intron 1 of 4) 37578 ENSMUSG00000111388.1 ENSMUSG00000111388 ENSMUST00000213870 Gm7183 processed_pseudogene Interval_78622 chr18 15489314 15490157 + 0 NA intron (ENSMUSG00000047161.12, intron 5 of 5) protein_coding-intron (ENSMUSG00000047161.12, intron 3 of 3) 86648 ENSMUSG00000117541.1 ENSMUSG00000117541 ENSMUST00000234487 Gm50048 antisense Interval_131589 chr5 138425777 138426507 + 0 NA Intergenic Intergenic -13229 ENSMUSG00000112194.1 ENSMUSG00000112194 ENSMUST00000218308 Gm48029 processed_pseudogene Interval_93073 chr2 69939118 69939884 + 0 NA TTS (ENSMUSG00000044308.17) protein_coding-TTS (ENSMUSG00000044308.17) -49285 ENSMUSG00000044308.17 ENSMUSG00000044308 ENSMUST00000123890 Ubr3 protein_coding Interval_120921 chr4 151638830 151639322 + 0 NA exon (ENSMUSG00000014592.21, exon 4 of 8) protein_coding-exon (ENSMUSG00000014592.21, exon 4 of 8) 222628 ENSMUSG00000014592.21 ENSMUSG00000014592 ENSMUST00000135780 Camta1 protein_coding Interval_163425 chr9 21384222 21384492 + 0 NA exon (ENSMUSG00000032178.14, exon 1 of 1) protein_coding-exon (ENSMUSG00000032178.14, exon 1 of 1) -4195 ENSMUSG00000032178.14 ENSMUSG00000032178 ENSMUST00000214200 Ilf3 protein_coding Interval_161969 chr8 124165300 124165557 + 0 NA intron (ENSMUSG00000092329.1, intron 1 of 15) protein_coding-intron (ENSMUSG00000092329.1, intron 1 of 15) 5355 ENSMUSG00000110482.1 ENSMUSG00000110482 ENSMUST00000212467 Gm3889 processed_pseudogene Interval_139877 chr6 112273408 112274543 + 0 NA intron (ENSMUSG00000057604.9, intron 1 of 5) protein_coding-intron (ENSMUSG00000057604.9, intron 1 of 5) 217 ENSMUSG00000057604.9 ENSMUSG00000057604 ENSMUST00000032376 Lmcd1 protein_coding Interval_59767 chr15 59112983 59113720 + 0 NA Intergenic Intergenic -31346 ENSMUSG00000022353.10 ENSMUSG00000022353 ENSMUST00000227797 Mtss1 protein_coding Interval_136474 chr6 54822782 54825594 + 0 NA intron (ENSMUSG00000058446.14, intron 1 of 3) protein_coding-intron (ENSMUSG00000058446.14, intron 1 of 4) 6918 ENSMUSG00000058446.14 ENSMUSG00000058446 ENSMUST00000127331 Znrf2 protein_coding Interval_98873 chr2 155701421 155701692 + 0 NA TTS (ENSMUSG00000038312.10) protein_coding-TTS (ENSMUSG00000038312.10) 11762 ENSMUSG00000038312.10 ENSMUSG00000038312 ENSMUST00000139868 Edem2 protein_coding Interval_80214 chr18 38320304 38321216 + 0 NA Intergenic Intergenic 18220 ENSMUSG00000052102.15 ENSMUSG00000052102 ENSMUST00000237313 Gnpda1 protein_coding Interval_127927 chr5 109232624 109232986 + 0 NA Intergenic Intergenic -3739 ENSMUSG00000093543.1 ENSMUSG00000093543 ENSMUST00000176697 Gm8473 processed_pseudogene Interval_148848 chr7 89266912 89267109 + 0 NA intron (ENSMUSG00000039428.11, intron 2 of 5) protein_coding-intron (ENSMUSG00000039428.11, intron 4 of 14) 24289 ENSMUSG00000094780.1 ENSMUSG00000094780 ENSMUST00000180212 Gm24659 miRNA Interval_46980 chr13 73918601 73919448 + 0 NA intron (ENSMUSG00000021569.10, intron 3 of 6) protein_coding-intron (ENSMUSG00000021569.10, intron 9 of 12) 5686 ENSMUSG00000095943.1 ENSMUSG00000095943 ENSMUST00000175516 Gm25197 miRNA Interval_81577 chr18 61782251 61782862 + 0 NA intron (ENSMUSG00000033032.15, intron 1 of 15) protein_coding-intron (ENSMUSG00000033032.15, intron 1 of 18) 4055 ENSMUSG00000033032.15 ENSMUSG00000033032 ENSMUST00000147278 Afap1l1 protein_coding Interval_32880 chr11 112749735 112750146 + 0 NA intron (ENSMUSG00000041674.16, intron 3 of 5) processed_transcript-intron (ENSMUSG00000041674.16, intron 3 of 5) -32284 ENSMUSG00000000567.5 ENSMUSG00000000567 ENSMUST00000000579 Sox9 protein_coding Interval_158793 chr8 86623516 86624699 + 0 NA promoter-TSS (ENSMUSG00000047866.18) protein_coding-promoter-TSS (ENSMUSG00000047866.18) -27462 ENSMUSG00000047866.18 ENSMUSG00000047866 ENSMUST00000163987 Lonp2 protein_coding Interval_140443 chr6 118138659 118139594 + 0 NA promoter-TSS (ENSMUSG00000042042.14) protein_coding-promoter-TSS (ENSMUSG00000042042.14) -12720 ENSMUSG00000042042.14 ENSMUSG00000042042 ENSMUST00000136265 Csgalnact2 protein_coding Interval_33933 chr11 119514695 119516120 + 0 NA Intergenic Intergenic 23856 ENSMUSG00000039850.16 ENSMUSG00000039850 ENSMUST00000132015 Endov protein_coding Interval_43960 chr13 38453607 38454579 + 0 NA TTS (ENSMUSG00000114895.1) antisense-TTS (ENSMUSG00000114895.1) 7712 ENSMUSG00000114895.1 ENSMUSG00000114895 ENSMUST00000225893 4930579J19Rik antisense Interval_123929 chr5 36674919 36675347 + 0 NA intron (ENSMUSG00000029190.19, intron 1 of 2) protein_coding-intron (ENSMUSG00000029190.19, intron 1 of 8) 3475 ENSMUSG00000089197.1 ENSMUSG00000089197 ENSMUST00000158572 Gm25767 snoRNA Interval_111400 chr4 20777338 20779272 + 0 NA exon (ENSMUSG00000055761.14, exon 1 of 5) protein_coding-exon (ENSMUSG00000055761.14, exon 1 of 5) 262 ENSMUSG00000055761.14 ENSMUSG00000055761 ENSMUST00000102998 Nkain3 protein_coding Interval_24939 chr11 41739643 41740213 + 0 NA intron (ENSMUSG00000087306.7, intron 2 of 8) processed_transcript-intron (ENSMUSG00000087306.7, intron 2 of 8) 29586 ENSMUSG00000087306.7 ENSMUSG00000087306 ENSMUST00000139508 A230004M16Rik processed_transcript Interval_154678 chr8 22527257 22527464 + 0 NA intron (ENSMUSG00000037656.9, intron 2 of 2) protein_coding-intron (ENSMUSG00000037656.9, intron 1 of 10) 21134 ENSMUSG00000037656.9 ENSMUSG00000037656 ENSMUST00000210388 Slc20a2 protein_coding Interval_114906 chr4 86851119 86853629 + 0 NA Intergenic Intergenic 4971 ENSMUSG00000028495.14 ENSMUSG00000028495 ENSMUST00000130001 Rps6 protein_coding Interval_139535 chr6 100857323 100858066 + 0 NA intron (ENSMUSG00000052144.8, intron 1 of 3) protein_coding-intron (ENSMUSG00000052144.8, intron 3 of 8) 5209 ENSMUSG00000052144.8 ENSMUSG00000052144 ENSMUST00000203067 Ppp4r2 protein_coding Interval_56015 chr14 104394386 104394580 + 0 NA intron (ENSMUSG00000115424.1, intron 2 of 5) lincRNA-intron (ENSMUSG00000115424.1, intron 2 of 5) 64853 ENSMUSG00000115424.1 ENSMUSG00000115424 ENSMUST00000228613 D130079A08Rik lincRNA Interval_39034 chr12 84582808 84583264 + 0 NA intron (ENSMUSG00000021239.12, intron 3 of 4) protein_coding-intron (ENSMUSG00000021239.12, intron 3 of 4) 13196 ENSMUSG00000021239.12 ENSMUSG00000021239 ENSMUST00000169934 Vsx2 protein_coding Interval_20791 chr10 120962443 120962766 + 0 NA intron (ENSMUSG00000048661.14, intron 1 of 12) protein_coding-intron (ENSMUSG00000048661.14, intron 1 of 13) 11821 ENSMUSG00000093030.1 ENSMUSG00000093030 ENSMUST00000175289 Gm23632 miRNA Interval_164591 chr9 39618974 39619203 + 0 NA Intergenic Intergenic -3840 ENSMUSG00000059867.3 ENSMUSG00000059867 ENSMUST00000077060 Olfr960 protein_coding Interval_169837 chr9 102389380 102389776 + 0 NA Intergenic Intergenic 16460 ENSMUSG00000088138.1 ENSMUSG00000088138 ENSMUST00000157513 Gm22894 snRNA Interval_91212 chr2 35973170 35973586 + 0 NA intron (ENSMUSG00000026885.13, intron 1 of 7) protein_coding-intron (ENSMUSG00000026885.13, intron 1 of 9) -20964 ENSMUSG00000026885.13 ENSMUSG00000026885 ENSMUST00000162172 Ttll11 protein_coding Interval_76457 chr17 80311948 80312190 + 0 NA intron (ENSMUSG00000054901.7, intron 1 of 17) protein_coding-intron (ENSMUSG00000054901.7, intron 1 of 17) 21866 ENSMUSG00000045257.10 ENSMUSG00000045257 ENSMUST00000061703 Morn2 protein_coding Interval_4950 chr1 82884724 82885048 + 0 NA intron (ENSMUSG00000026159.13, intron 7 of 12) protein_coding-intron (ENSMUSG00000026159.13, intron 8 of 12) -28439 ENSMUSG00000113880.1 ENSMUSG00000113880 ENSMUST00000220768 A030005L19Rik protein_coding Interval_8464 chr1 139640985 139642013 + 0 NA intron (ENSMUSG00000090623.3, intron 1 of 5) unprocessed_pseudogene-intron (ENSMUSG00000090623.3, intron 1 of 5) 19400 ENSMUSG00000090623.3 ENSMUSG00000090623 ENSMUST00000170441 Cfhr3 unprocessed_pseudogene Interval_129727 chr5 121993767 121994084 + 0 NA intron (ENSMUSG00000042589.18, intron 1 of 6) protein_coding-intron (ENSMUSG00000042589.18, intron 2 of 22) -31405 ENSMUSG00000105795.1 ENSMUSG00000105795 ENSMUST00000198001 Gm3970 antisense Interval_116516 chr4 114950084 114950486 + 0 NA Intergenic Intergenic -24272 ENSMUSG00000044518.3 ENSMUSG00000044518 ENSMUST00000050940 Foxe3 protein_coding Interval_147646 chr7 70584167 70584787 + 0 NA TTS (ENSMUSG00000109021.1) lincRNA-TTS (ENSMUSG00000109021.1) 7993 ENSMUSG00000109021.1 ENSMUSG00000109021 ENSMUST00000208999 Gm44812 lincRNA Interval_55708 chr14 99185850 99186219 + 0 NA intron (ENSMUSG00000022064.10, intron 11 of 13) protein_coding-intron (ENSMUSG00000022064.10, intron 11 of 17) 74357 ENSMUSG00000115071.1 ENSMUSG00000115071 ENSMUST00000226897 Gm49026 TEC Interval_59693 chr15 58591883 58593058 + 0 NA intron (ENSMUSG00000037106.8, intron 19 of 40) protein_coding-intron (ENSMUSG00000037106.8, intron 19 of 40) 26856 ENSMUSG00000084485.1 ENSMUSG00000084485 ENSMUST00000122536 Gm23789 misc_RNA Interval_691 chr1 9951487 9953978 + 0 NA Intergenic Intergenic -9509 ENSMUSG00000098234.7 ENSMUSG00000098234 ENSMUST00000182742 Snhg6 lincRNA Interval_25476 chr11 48826003 48828260 + 0 NA promoter-TSS (ENSMUSG00000078154.3) protein_coding-promoter-TSS (ENSMUSG00000078154.3) -476 ENSMUSG00000078154.3 ENSMUSG00000078154 ENSMUST00000104959 Gm12184 protein_coding Interval_43711 chr13 35630424 35630935 + 0 NA intron (ENSMUSG00000114661.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000114661.1, intron 1 of 2) 30098 ENSMUSG00000114661.1 ENSMUSG00000114661 ENSMUST00000225886 Gm48707 lincRNA Interval_112689 chr4 44097759 44098307 + 0 NA intron (ENSMUSG00000087326.1, intron 1 of 1) processed_transcript-intron (ENSMUSG00000087326.1, intron 1 of 1) 5401 ENSMUSG00000087326.1 ENSMUSG00000087326 ENSMUST00000146576 Gm12503 processed_transcript Interval_118800 chr4 133790868 133791300 + 0 NA Intergenic Intergenic 6635 ENSMUSG00000084555.1 ENSMUSG00000084555 ENSMUST00000122606 Gm25270 snRNA Interval_142996 chr6 148187634 148187875 + 0 NA TTS (ENSMUSG00000030304.11) protein_coding-TTS (ENSMUSG00000030304.11) -4546 ENSMUSG00000030304.11 ENSMUSG00000030304 ENSMUST00000132413 Ergic2 protein_coding Interval_49959 chr13 118936764 118937231 + 0 NA Intergenic Intergenic -78583 ENSMUSG00000114868.1 ENSMUSG00000114868 ENSMUST00000224309 Gm47335 processed_pseudogene Interval_68348 chr16 73863570 73864890 + 0 NA Intergenic Intergenic 97630 ENSMUSG00000052516.19 ENSMUSG00000052516 ENSMUST00000156010 Robo2 protein_coding Interval_146971 chr7 56464104 56464370 + 0 NA intron (ENSMUSG00000030450.11, intron 22 of 22) protein_coding-intron (ENSMUSG00000030450.11, intron 23 of 23) -221087 ENSMUSG00000108773.1 ENSMUSG00000108773 ENSMUST00000206278 Gm44506 antisense Interval_20381 chr10 117208190 117208446 + 0 NA Intergenic Intergenic 9040 ENSMUSG00000020171.8 ENSMUSG00000020171 ENSMUST00000219609 Yeats4 protein_coding Interval_14017 chr10 25510826 25511289 + 0 NA intron (ENSMUSG00000019978.16, intron 6 of 7) protein_coding-intron (ENSMUSG00000019978.16, intron 18 of 19) 16434 ENSMUSG00000019978.16 ENSMUSG00000019978 ENSMUST00000219201 Epb41l2 protein_coding Interval_169292 chr9 96189277 96189750 + 0 NA Intergenic Intergenic 18597 ENSMUSG00000041440.18 ENSMUSG00000041440 ENSMUST00000189249 Gk5 protein_coding Interval_33068 chr11 114154233 114154444 + 0 NA Intergenic Intergenic 32439 ENSMUSG00000086135.1 ENSMUSG00000086135 ENSMUST00000126577 1700001J04Rik antisense Interval_25165 chr11 44684532 44684843 + 0 NA intron (ENSMUSG00000057098.14, intron 6 of 15) protein_coding-intron (ENSMUSG00000057098.14, intron 6 of 15) -22011 ENSMUSG00000085784.1 ENSMUSG00000085784 ENSMUST00000130493 Gm12158 antisense Interval_106835 chr3 101216568 101217572 + 0 NA Intergenic Intergenic -9671 ENSMUSG00000082415.1 ENSMUSG00000082415 ENSMUST00000120887 Gm12486 processed_pseudogene Interval_112499 chr4 41630306 41630499 + 0 NA intron (ENSMUSG00000061322.15, intron 15 of 19) protein_coding-intron (ENSMUSG00000061322.15, intron 15 of 19) -1242 ENSMUSG00000061322.15 ENSMUSG00000061322 ENSMUST00000119127 Dnaic1 protein_coding Interval_17135 chr10 71900536 71901104 + 0 NA Intergenic Intergenic 2784 ENSMUSG00000077142.1 ENSMUSG00000077142 ENSMUST00000103954 Gm22937 snoRNA Interval_153854 chr8 9946078 9946288 + 0 NA Intergenic Intergenic -26720 ENSMUSG00000095279.2 ENSMUSG00000095279 ENSMUST00000179462 Gm10067 lincRNA Interval_147119 chr7 63395093 63395727 + 0 NA intron (ENSMUSG00000097682.1, intron 7 of 9) lincRNA-intron (ENSMUSG00000097682.1, intron 7 of 9) 49119 ENSMUSG00000097682.1 ENSMUSG00000097682 ENSMUST00000181327 4930554H23Rik lincRNA Interval_151480 chr7 122969331 122970708 + 0 NA promoter-TSS (ENSMUSG00000030779.16) protein_coding-promoter-TSS (ENSMUSG00000030779.16) 31 ENSMUSG00000108452.1 ENSMUSG00000108452 ENSMUST00000205998 4930413G21Rik TEC Interval_41693 chr12 117809424 117810033 + 0 NA intron (ENSMUSG00000021175.15, intron 1 of 4) protein_coding-intron (ENSMUSG00000021175.15, intron 1 of 4) 24623 ENSMUSG00000093544.1 ENSMUSG00000093544 ENSMUST00000175828 Gm20613 processed_pseudogene Interval_98783 chr2 154907408 154908773 + 0 NA intron (ENSMUSG00000027596.10, intron 1 of 4) protein_coding-intron (ENSMUSG00000027596.10, intron 1 of 4) -15308 ENSMUSG00000074656.12 ENSMUSG00000074656 ENSMUST00000135524 Eif2s2 protein_coding Interval_77527 chr17 90830950 90831170 + 0 NA intron (ENSMUSG00000024109.18, intron 1 of 12) protein_coding-intron (ENSMUSG00000024109.18, intron 4 of 20) -30109 ENSMUSG00000090160.1 ENSMUSG00000090160 ENSMUST00000162121 4930480K15Rik antisense Interval_13190 chr10 12916937 12917633 + 0 NA intron (ENSMUSG00000097378.8, intron 2 of 2) lincRNA-intron (ENSMUSG00000097378.8, intron 3 of 3) 5805 ENSMUSG00000097378.8 ENSMUSG00000097378 ENSMUST00000180529 B230208H11Rik lincRNA Interval_139114 chr6 95364829 95365280 + 0 NA Intergenic Intergenic -31077 ENSMUSG00000068180.13 ENSMUSG00000068180 ENSMUST00000171594 AY512915 lincRNA Interval_48339 chr13 98298609 98299558 + 0 NA intron (ENSMUSG00000096330.8, intron 2 of 5) protein_coding-intron (ENSMUSG00000096330.8, intron 3 of 6) -3421 ENSMUSG00000096330.8 ENSMUSG00000096330 ENSMUST00000186911 Gm21976 protein_coding Interval_107115 chr3 103658558 103658929 + 0 NA Intergenic Intergenic 7884 ENSMUSG00000084508.1 ENSMUSG00000084508 ENSMUST00000122559 Gm25325 miRNA Interval_158148 chr8 79222872 79223072 + 0 NA TTS (ENSMUSG00000031682.5) protein_coding-TTS (ENSMUSG00000031682.5) -2958 ENSMUSG00000110388.1 ENSMUSG00000110388 ENSMUST00000211572 Gm30329 antisense Interval_40677 chr12 106963764 106964036 + 0 NA Intergenic Intergenic -7972 ENSMUSG00000086319.1 ENSMUSG00000086319 ENSMUST00000124395 Gm16087 lincRNA Interval_76775 chr17 83968120 83968501 + 0 NA Intergenic Intergenic -7380 ENSMUSG00000117564.1 ENSMUSG00000117564 ENSMUST00000234390 Gm41638 lincRNA Interval_49949 chr13 118733483 118733805 + 0 NA intron (ENSMUSG00000021732.14, intron 1 of 2) protein_coding-intron (ENSMUSG00000021732.14, intron 1 of 2) -18248 ENSMUSG00000086709.1 ENSMUSG00000086709 ENSMUST00000144680 Gm16263 antisense Interval_3335 chr1 57008986 57009326 + 0 NA intron (ENSMUSG00000087022.4, intron 3 of 4) processed_transcript-intron (ENSMUSG00000087022.4, intron 3 of 4) -9881 ENSMUSG00000094128.1 ENSMUSG00000094128 ENSMUST00000179712 Gm23943 miRNA Interval_58154 chr15 29823574 29824481 + 0 NA Intergenic Intergenic 64447 ENSMUSG00000088621.1 ENSMUSG00000088621 ENSMUST00000157996 Gm23033 snoRNA Interval_143788 chr7 16308485 16310642 + 0 NA promoter-TSS (ENSMUSG00000002083.13) protein_coding-promoter-TSS (ENSMUSG00000002083.13) 1170 ENSMUSG00000002083.13 ENSMUSG00000002083 ENSMUST00000147267 Bbc3 protein_coding Interval_107866 chr3 116398681 116400043 + 0 NA TTS (ENSMUSG00000033502.15) protein_coding-TTS (ENSMUSG00000033502.15) 29383 ENSMUSG00000033502.15 ENSMUSG00000033502 ENSMUST00000136994 Cdc14a protein_coding Interval_163802 chr9 26313830 26314101 + 0 NA Intergenic Intergenic 54693 ENSMUSG00000111238.1 ENSMUSG00000111238 ENSMUST00000217552 Gm19113 processed_pseudogene Interval_109202 chr3 137863919 137865801 + 0 NA promoter-TSS (ENSMUSG00000037894.13) protein_coding-promoter-TSS (ENSMUSG00000037894.13) 287 ENSMUSG00000037894.13 ENSMUSG00000037894 ENSMUST00000125821 H2az1 protein_coding Interval_87214 chr19 46970360 46971504 + 0 NA intron (ENSMUSG00000025041.17, intron 1 of 17) protein_coding-intron (ENSMUSG00000025041.17, intron 1 of 17) -8624 ENSMUSG00000025041.17 ENSMUSG00000025041 ENSMUST00000237658 Nt5c2 protein_coding Interval_149671 chr7 100533571 100533802 + 0 NA Intergenic Intergenic -3385 ENSMUSG00000044881.7 ENSMUSG00000044881 ENSMUST00000120454 Coa4 protein_coding Interval_15332 chr10 44599073 44599760 + 0 NA promoter-TSS (ENSMUSG00000111535.1) lincRNA-promoter-TSS (ENSMUSG00000111535.1) 696 ENSMUSG00000111535.1 ENSMUSG00000111535 ENSMUST00000214824 Gm35154 lincRNA Interval_40015 chr12 100502677 100503018 + 0 NA intron (ENSMUSG00000033530.8, intron 1 of 9) protein_coding-intron (ENSMUSG00000033530.8, intron 1 of 19) -36549 ENSMUSG00000033530.8 ENSMUSG00000033530 ENSMUST00000220614 Ttc7b protein_coding Interval_65371 chr16 21960602 21960886 + 0 NA intron (ENSMUSG00000044626.13, intron 8 of 9) protein_coding-intron (ENSMUSG00000044626.13, intron 8 of 9) -13213 ENSMUSG00000022856.9 ENSMUSG00000022856 ENSMUST00000232635 Tmem41a protein_coding Interval_7503 chr1 131883978 131885565 + 0 NA Intergenic Intergenic 17118 ENSMUSG00000026433.13 ENSMUSG00000026433 ENSMUST00000187084 Rab29 protein_coding Interval_31202 chr11 98873761 98876224 + 0 NA intron (ENSMUSG00000038013.14, intron 1 of 3) protein_coding-intron (ENSMUSG00000038013.14, intron 1 of 7) -4493 ENSMUSG00000088485.1 ENSMUSG00000088485 ENSMUST00000157860 Gm23640 snRNA Interval_43832 chr13 37460196 37460709 + 0 NA Intergenic Intergenic -7244 ENSMUSG00000099847.1 ENSMUSG00000099847 ENSMUST00000187093 Gm29458 lincRNA Interval_126020 chr5 76894475 76895048 + 0 NA exon (ENSMUSG00000055923.16, exon 1 of 1) protein_coding-intron (ENSMUSG00000055923.16, intron 4 of 4) 317 ENSMUSG00000055923.16 ENSMUSG00000055923 ENSMUST00000134805 Aasdh protein_coding Interval_58367 chr15 33668995 33669565 + 0 NA Intergenic Intergenic -15844 ENSMUSG00000115779.1 ENSMUSG00000115779 ENSMUST00000228272 4930592A05Rik antisense Interval_16480 chr10 63099580 63100821 + 0 NA promoter-TSS (ENSMUSG00000036816.4) protein_coding-promoter-TSS (ENSMUSG00000036816.4) -164 ENSMUSG00000036816.4 ENSMUSG00000036816 ENSMUST00000219964 Atoh7 protein_coding Interval_85695 chr19 29702640 29705186 + 0 NA intron (ENSMUSG00000024806.4, intron 2 of 4) protein_coding-intron (ENSMUSG00000024806.4, intron 2 of 4) 5979 ENSMUSG00000024806.4 ENSMUSG00000024806 ENSMUST00000235954 Mlana protein_coding Interval_70505 chr17 11156355 11156593 + 0 NA intron (ENSMUSG00000023826.16, intron 2 of 6) protein_coding-intron (ENSMUSG00000023826.16, intron 2 of 6) -67006 ENSMUSG00000100402.1 ENSMUSG00000100402 ENSMUST00000190466 Gm28505 antisense Interval_94734 chr2 93872946 93873961 + 0 NA Intergenic Intergenic -16721 ENSMUSG00000075023.11 ENSMUSG00000075023 ENSMUST00000128995 Accsl protein_coding Interval_146122 chr7 44143366 44143911 + 0 NA Intergenic Intergenic 6871 ENSMUSG00000038968.3 ENSMUSG00000038968 ENSMUST00000005933 Klk1b16 protein_coding Interval_159505 chr8 95137493 95138179 + 0 NA promoter-TSS (ENSMUSG00000031788.14) protein_coding-promoter-TSS (ENSMUSG00000031788.14) -474 ENSMUSG00000110475.1 ENSMUSG00000110475 ENSMUST00000212925 Gm31036 antisense Interval_64352 chr16 10738232 10738709 + 0 NA exon (ENSMUSG00000068663.14, exon 14 of 15) protein_coding-exon (ENSMUSG00000068663.14, exon 14 of 15) 47066 ENSMUSG00000038037.5 ENSMUSG00000038037 ENSMUST00000038099 Socs1 protein_coding Interval_153264 chr7 143015624 143017126 + 0 NA intron (ENSMUSG00000000244.17, intron 4 of 4) protein_coding-intron (ENSMUSG00000000244.17, intron 6 of 8) 10685 ENSMUSG00000000244.17 ENSMUSG00000000244 ENSMUST00000154264 Tspan32 protein_coding Interval_77969 chr18 6231384 6232649 + 0 NA intron (ENSMUSG00000006740.14, intron 3 of 16) protein_coding-intron (ENSMUSG00000006740.14, intron 2 of 25) -8798 ENSMUSG00000117519.1 ENSMUSG00000117519 ENSMUST00000234972 Gm41664 antisense Interval_63595 chr15 102246133 102247986 + 0 NA promoter-TSS (ENSMUSG00000001288.15) protein_coding-promoter-TSS (ENSMUSG00000001288.15) 5581 ENSMUSG00000001288.15 ENSMUSG00000001288 ENSMUST00000230330 Rarg protein_coding Interval_165757 chr9 52216918 52217822 + 0 NA Intergenic Intergenic -48798 ENSMUSG00000035164.8 ENSMUSG00000035164 ENSMUST00000165519 Zc3h12c protein_coding Interval_148628 chr7 83571757 83572665 + 0 NA Intergenic Intergenic -21955 ENSMUSG00000094841.2 ENSMUSG00000094841 ENSMUST00000208877 Gm10610 lincRNA Interval_114442 chr4 77249230 77250509 + 0 NA intron (ENSMUSG00000028399.18, intron 6 of 6) protein_coding-intron (ENSMUSG00000028399.18, intron 6 of 14) -291371 ENSMUSG00000092829.1 ENSMUSG00000092829 ENSMUST00000175088 Gm23159 miRNA Interval_15934 chr10 59451860 59452246 + 0 NA intron (ENSMUSG00000009647.13, intron 6 of 7) protein_coding-intron (ENSMUSG00000009647.13, intron 3 of 4) -20967 ENSMUSG00000009654.4 ENSMUSG00000009654 ENSMUST00000162493 Oit3 protein_coding Interval_20228 chr10 116294136 116294449 + 0 NA intron (ENSMUSG00000020154.10, intron 3 of 33) protein_coding-intron (ENSMUSG00000020154.10, intron 3 of 7) 9743 ENSMUSG00000112461.1 ENSMUSG00000112461 ENSMUST00000219933 Gm47625 TEC Interval_112292 chr4 40157149 40157376 + 0 NA intron (ENSMUSG00000028405.9, intron 1 of 20) protein_coding-intron (ENSMUSG00000028405.9, intron 1 of 20) -6457 ENSMUSG00000028405.9 ENSMUSG00000028405 ENSMUST00000135787 Aco1 protein_coding Interval_38674 chr12 80958735 80959220 + 0 NA intron (ENSMUSG00000021135.8, intron 2 of 2) protein_coding-intron (ENSMUSG00000021135.8, intron 2 of 4) 9101 ENSMUSG00000021135.8 ENSMUSG00000021135 ENSMUST00000220266 Slc10a1 protein_coding Interval_54089 chr14 65157481 65158278 + 0 NA Intergenic Intergenic -9035 ENSMUSG00000114944.1 ENSMUSG00000114944 ENSMUST00000224037 Gm48299 processed_pseudogene Interval_171847 chr9 121718284 121720180 + 0 NA promoter-TSS (ENSMUSG00000032525.15) protein_coding-promoter-TSS (ENSMUSG00000032525.15) 8765 ENSMUSG00000032526.11 ENSMUSG00000032526 ENSMUST00000217579 Ss18l2 protein_coding Interval_28212 chr11 74395783 74396147 + 0 NA intron (ENSMUSG00000038807.19, intron 19 of 25) protein_coding-intron (ENSMUSG00000038807.19, intron 19 of 25) 33896 ENSMUSG00000058275.3 ENSMUSG00000058275 ENSMUST00000077794 Olfr412 protein_coding Interval_63281 chr15 100079725 100081046 + 0 NA intron (ENSMUSG00000023026.16, intron 1 of 37) protein_coding-intron (ENSMUSG00000023026.16, intron 1 of 37) 11372 ENSMUSG00000116021.1 ENSMUSG00000116021 ENSMUST00000230449 Gm49474 TEC Interval_10931 chr1 177170048 177170438 + 0 NA exon (ENSMUSG00000103646.1, exon 1 of 1) TEC-exon (ENSMUSG00000103646.1, exon 1 of 1) 619 ENSMUSG00000103646.1 ENSMUSG00000103646 ENSMUST00000195379 Gm37706 TEC Interval_146684 chr7 49399256 49401599 + 0 NA intron (ENSMUSG00000052512.17, intron 4 of 4) protein_coding-intron (ENSMUSG00000052512.17, intron 3 of 5) 54333 ENSMUSG00000109051.1 ENSMUSG00000109051 ENSMUST00000208060 Gm44913 TEC Interval_14174 chr10 28306556 28307099 + 0 NA intron (ENSMUSG00000019889.10, intron 3 of 14) protein_coding-intron (ENSMUSG00000019889.10, intron 3 of 31) -92706 ENSMUSG00000076377.1 ENSMUSG00000076377 ENSMUST00000102422 Gm22370 miRNA Interval_29484 chr11 84324833 84325102 + 0 NA intron (ENSMUSG00000020532.18, intron 41 of 55) protein_coding-intron (ENSMUSG00000020532.18, intron 39 of 53) 135374 ENSMUSG00000103122.1 ENSMUSG00000103122 ENSMUST00000194891 Gm37391 TEC Interval_147438 chr7 67216872 67217500 + 0 NA intron (ENSMUSG00000097527.2, intron 2 of 2) lincRNA-intron (ENSMUSG00000097527.2, intron 2 of 2) 5350 ENSMUSG00000097527.2 ENSMUSG00000097527 ENSMUST00000208802 1700112J16Rik lincRNA Interval_99663 chr2 164046911 164047745 + 0 NA promoter-TSS (ENSMUSG00000054582.4) protein_coding-promoter-TSS (ENSMUSG00000054582.4) 10328 ENSMUSG00000054582.4 ENSMUSG00000054582 ENSMUST00000150523 Pabpc1l protein_coding Interval_27290 chr11 65407322 65408938 + 0 NA Intergenic Intergenic -42332 ENSMUSG00000085162.7 ENSMUSG00000085162 ENSMUST00000130362 Gm12295 lincRNA Interval_131281 chr5 136149649 136151256 + 0 NA TTS (ENSMUSG00000039747.11) protein_coding-TTS (ENSMUSG00000039747.11) 14250 ENSMUSG00000039754.10 ENSMUSG00000039754 ENSMUST00000100568 Alkbh4 protein_coding Interval_52281 chr14 43759632 43759877 + 0 NA Intergenic Intergenic -2398 ENSMUSG00000115272.1 ENSMUSG00000115272 ENSMUST00000226367 Gm49965 lincRNA Interval_16741 chr10 67858614 67859111 + 0 NA Intergenic Intergenic 53573 ENSMUSG00000037855.15 ENSMUSG00000037855 ENSMUST00000138543 Zfp365 protein_coding Interval_5529 chr1 89587415 89587659 + 0 NA intron (ENSMUSG00000055013.16, intron 1 of 17) protein_coding-intron (ENSMUSG00000055013.16, intron 1 of 17) 18772 ENSMUSG00000101662.1 ENSMUSG00000101662 ENSMUST00000191576 Gm28499 sense_intronic Interval_127138 chr5 100530672 100530966 + 0 NA exon (ENSMUSG00000035297.14, exon 4 of 4) protein_coding-exon (ENSMUSG00000035297.14, exon 4 of 4) 12362 ENSMUSG00000035297.14 ENSMUSG00000035297 ENSMUST00000123559 Cops4 protein_coding Interval_68293 chr16 72678527 72678729 + 0 NA intron (ENSMUSG00000022883.11, intron 1 of 1) protein_coding-intron (ENSMUSG00000022883.11, intron 1 of 28) -297721 ENSMUSG00000022883.11 ENSMUSG00000022883 ENSMUST00000232432 Robo1 protein_coding Interval_172675 chrX 42017402 42018357 + 0 NA Intergenic Intergenic -42042 ENSMUSG00000025860.15 ENSMUSG00000025860 ENSMUST00000026978 Xiap protein_coding Interval_63676 chr15 102736527 102737132 + 0 NA Intergenic Intergenic -26769 ENSMUSG00000023055.10 ENSMUSG00000023055 ENSMUST00000230374 Calcoco1 protein_coding Interval_34692 chr12 8707689 8708048 + 0 NA TTS (ENSMUSG00000020594.14) protein_coding-TTS (ENSMUSG00000020594.14) 33734 ENSMUSG00000020594.14 ENSMUSG00000020594 ENSMUST00000171608 Pum2 protein_coding Interval_80900 chr18 50006943 50007454 + 0 NA intron (ENSMUSG00000062210.13, intron 1 of 3) protein_coding-intron (ENSMUSG00000062210.13, intron 1 of 1) -39542 ENSMUSG00000062210.13 ENSMUSG00000062210 ENSMUST00000148159 Tnfaip8 protein_coding Interval_13857 chr10 23977740 23978590 + 0 NA Intergenic Intergenic 7459 ENSMUSG00000069706.3 ENSMUSG00000069706 ENSMUST00000092659 Taar5 protein_coding Interval_154323 chr8 14460152 14460382 + 0 NA intron (ENSMUSG00000047495.15, intron 2 of 2) protein_coding-intron (ENSMUSG00000047495.15, intron 2 of 14) 110089 ENSMUSG00000106670.1 ENSMUSG00000106670 ENSMUST00000199602 Gm44347 miRNA Interval_44510 chr13 45532313 45533014 + 0 NA intron (ENSMUSG00000000253.13, intron 6 of 8) protein_coding-intron (ENSMUSG00000000253.13, intron 6 of 8) -13490 ENSMUSG00000000253.13 ENSMUSG00000000253 ENSMUST00000222227 Gmpr protein_coding Interval_159881 chr8 104590931 104592027 + 0 NA promoter-TSS (ENSMUSG00000048371.8) protein_coding-promoter-TSS (ENSMUSG00000048371.8) 28 ENSMUSG00000048371.8 ENSMUSG00000048371 ENSMUST00000059588 Pdp2 protein_coding Interval_60184 chr15 67070366 67071954 + 0 NA Intergenic Intergenic 31102 ENSMUSG00000116289.1 ENSMUSG00000116289 ENSMUST00000230911 Gm31342 lincRNA Interval_167186 chr9 66011839 66012671 + 0 NA intron (ENSMUSG00000032384.16, intron 2 of 6) protein_coding-intron (ENSMUSG00000032384.16, intron 10 of 13) -47967 ENSMUSG00000032383.7 ENSMUSG00000032383 ENSMUST00000034947 Ppib protein_coding Interval_24118 chr11 30491444 30492583 + 0 NA Intergenic Intergenic -20186 ENSMUSG00000040919.13 ENSMUSG00000040919 ENSMUST00000152718 4930505A04Rik protein_coding Interval_127442 chr5 103968983 103969896 + 0 NA intron (ENSMUSG00000034528.15, intron 2 of 5) protein_coding-intron (ENSMUSG00000034528.15, intron 3 of 6) 7887 ENSMUSG00000034528.15 ENSMUSG00000034528 ENSMUST00000112803 Hsd17b13 protein_coding Interval_145004 chr7 29377782 29377978 + 0 NA promoter-TSS (ENSMUSG00000030583.16) protein_coding-promoter-TSS (ENSMUSG00000030583.16) -275 ENSMUSG00000030583.16 ENSMUSG00000030583 ENSMUST00000183085 Sipa1l3 protein_coding Interval_59070 chr15 42982662 42983430 + 0 NA Intergenic Intergenic 187780 ENSMUSG00000051920.7 ENSMUSG00000051920 ENSMUST00000226402 Rspo2 protein_coding Interval_71781 chr17 26046265 26046462 + 0 NA intron (ENSMUSG00000037098.18, intron 1 of 2) protein_coding-intron (ENSMUSG00000037098.18, intron 1 of 13) -26783 ENSMUSG00000118105.1 ENSMUSG00000118105 ENSMUST00000237108 Gm17814 processed_pseudogene Interval_107025 chr3 103033806 103034586 + 0 NA intron (ENSMUSG00000068823.10, intron 1 of 6) protein_coding-intron (ENSMUSG00000068823.10, intron 2 of 19) -5803 ENSMUSG00000068823.10 ENSMUSG00000068823 ENSMUST00000197844 Csde1 protein_coding Interval_130800 chr5 130703852 130704082 + 0 NA intron (ENSMUSG00000060371.12, intron 4 of 5) protein_coding-intron (ENSMUSG00000060371.12, intron 5 of 6) -78734 ENSMUSG00000088972.2 ENSMUSG00000088972 ENSMUST00000158347 Gm23761 snRNA Interval_148276 chr7 80232041 80233276 + 0 NA promoter-TSS (ENSMUSG00000050973.11) protein_coding-promoter-TSS (ENSMUSG00000050973.11) 147 ENSMUSG00000030538.15 ENSMUSG00000030538 ENSMUST00000206618 Cib1 protein_coding Interval_63367 chr15 100640402 100640894 + 0 NA TTS (ENSMUSG00000098112.8) protein_coding-TTS (ENSMUSG00000098112.8) -5089 ENSMUSG00000053559.13 ENSMUSG00000053559 ENSMUST00000230517 Smagp protein_coding Interval_65188 chr16 20419432 20420483 + 0 NA intron (ENSMUSG00000022822.16, intron 2 of 3) protein_coding-intron (ENSMUSG00000022822.16, intron 2 of 10) -16081 ENSMUSG00000093649.1 ENSMUSG00000093649 ENSMUST00000177106 Gm20614 unprocessed_pseudogene Interval_127639 chr5 106031168 106031467 + 0 NA Intergenic Intergenic 41116 ENSMUSG00000095052.1 ENSMUSG00000095052 ENSMUST00000180111 Gm25672 snRNA Interval_121517 chr5 3100259 3100592 + 0 NA TTS (ENSMUSG00000106399.1) processed_pseudogene-TTS (ENSMUSG00000106399.1) 1035 ENSMUSG00000106399.1 ENSMUSG00000106399 ENSMUST00000195920 Gm43530 processed_pseudogene Interval_149358 chr7 97679073 97679481 + 0 NA intron (ENSMUSG00000035623.14, intron 12 of 14) protein_coding-intron (ENSMUSG00000035623.14, intron 13 of 15) 17266 ENSMUSG00000086993.1 ENSMUSG00000086993 ENSMUST00000141549 Rsf1os2 antisense Interval_81726 chr18 63910900 63911391 + 0 NA intron (ENSMUSG00000040560.10, intron 21 of 26) protein_coding-intron (ENSMUSG00000040560.10, intron 22 of 27) -1989 ENSMUSG00000084642.1 ENSMUSG00000084642 ENSMUST00000122693 Gm24384 snRNA Interval_154413 chr8 15906205 15906424 + 0 NA intron (ENSMUSG00000060924.15, intron 16 of 20) protein_coding-intron (ENSMUSG00000060924.15, intron 65 of 69) 28650 ENSMUSG00000109757.1 ENSMUSG00000109757 ENSMUST00000211639 Gm7128 processed_pseudogene Interval_69863 chr16 97665158 97666257 + 0 NA Intergenic Intergenic 98080 ENSMUSG00000005251.15 ENSMUSG00000005251 ENSMUST00000019386 Ripk4 protein_coding Interval_65302 chr16 21369817 21370341 + 0 NA Intergenic Intergenic -36950 ENSMUSG00000116632.1 ENSMUSG00000116632 ENSMUST00000231972 Magef1 transcribed_processed_pseudogene Interval_74863 chr17 56950922 56951593 + 0 NA Intergenic Intergenic -7063 ENSMUSG00000117245.1 ENSMUSG00000117245 ENSMUST00000232883 Gm49887 lincRNA Interval_40545 chr12 105622757 105623789 + 0 NA promoter-TSS (ENSMUSG00000041341.10) protein_coding-promoter-TSS (ENSMUSG00000041341.10) -131 ENSMUSG00000041341.10 ENSMUSG00000041341 ENSMUST00000221568 Atg2b protein_coding Interval_172302 chrX 12673018 12674443 + 0 NA promoter-TSS (ENSMUSG00000044148.6) protein_coding-promoter-TSS (ENSMUSG00000044148.6) -62 ENSMUSG00000044148.6 ENSMUSG00000044148 ENSMUST00000060108 1810030O07Rik protein_coding Interval_46388 chr13 64420983 64422770 + 0 NA Intergenic Intergenic 10526 ENSMUSG00000113696.1 ENSMUSG00000113696 ENSMUST00000221465 1700015C15Rik antisense Interval_123720 chr5 34815008 34815365 + 0 NA TTS (ENSMUSG00000029104.15) protein_coding-TTS (ENSMUSG00000029104.15) 19398 ENSMUSG00000029104.15 ENSMUSG00000029104 ENSMUST00000124272 Htt protein_coding Interval_27509 chr11 68308736 68308964 + 0 NA intron (ENSMUSG00000020902.12, intron 3 of 7) protein_coding-intron (ENSMUSG00000020902.12, intron 2 of 6) -37971 ENSMUSG00000084993.1 ENSMUSG00000084993 ENSMUST00000151817 Gm12305 sense_intronic Interval_106105 chr3 93144351 93144986 + 0 NA promoter-TSS (ENSMUSG00000078657.6) protein_coding-promoter-TSS (ENSMUSG00000078657.6) -121 ENSMUSG00000078657.6 ENSMUSG00000078657 ENSMUST00000192372 Crnn protein_coding Interval_135716 chr6 44559042 44559516 + 0 NA Intergenic Intergenic 108156 ENSMUSG00000107953.1 ENSMUSG00000107953 ENSMUST00000204867 Gm44211 processed_pseudogene Interval_11367 chr1 181256340 181258127 + 0 NA Intergenic Intergenic -14913 ENSMUSG00000081214.3 ENSMUSG00000081214 ENSMUST00000117444 Rpl35a-ps2 processed_pseudogene Interval_161299 chr8 119604420 119605625 + 0 NA intron (ENSMUSG00000031832.15, intron 1 of 13) protein_coding-intron (ENSMUSG00000031832.15, intron 1 of 14) 184 ENSMUSG00000031832.15 ENSMUSG00000031832 ENSMUST00000126547 Taf1c protein_coding Interval_17569 chr10 77826687 77827190 + 0 NA exon (ENSMUSG00000069582.3, exon 1 of 1) protein_coding-exon (ENSMUSG00000069582.3, exon 1 of 1) 157 ENSMUSG00000069582.3 ENSMUSG00000069582 ENSMUST00000092369 Krtap10-4 protein_coding Interval_75796 chr17 71457252 71458036 + 0 NA TTS (ENSMUSG00000091831.5) protein_coding-TTS (ENSMUSG00000091831.5) 1656 ENSMUSG00000091831.5 ENSMUSG00000091831 ENSMUST00000183937 Gm4707 protein_coding Interval_152741 chr7 137087068 137087713 + 0 NA intron (ENSMUSG00000054612.4, intron 3 of 4) protein_coding-intron (ENSMUSG00000054612.4, intron 3 of 4) -80430 ENSMUSG00000110174.1 ENSMUSG00000110174 ENSMUST00000211656 Gm45499 processed_pseudogene Interval_7609 chr1 132496727 132497304 + 0 NA exon (ENSMUSG00000026439.14, exon 13 of 15) protein_coding-exon (ENSMUSG00000026439.14, exon 13 of 15) -9874 ENSMUSG00000048174.2 ENSMUSG00000048174 ENSMUST00000188789 Tmem81 protein_coding Interval_87959 chr19 57390839 57391084 + 0 NA Intergenic Intergenic 29931 ENSMUSG00000033478.5 ENSMUSG00000033478 ENSMUST00000237170 Fam160b1 protein_coding Interval_61461 chr15 81768705 81769330 + 0 NA exon (ENSMUSG00000022390.11, exon 4 of 23) protein_coding-exon (ENSMUSG00000022390.11, exon 4 of 23) -6762 ENSMUSG00000022390.11 ENSMUSG00000022390 ENSMUST00000230590 Zc3h7b protein_coding Interval_12347 chr1 192337679 192338084 + 0 NA intron (ENSMUSG00000058248.12, intron 7 of 10) protein_coding-intron (ENSMUSG00000058248.12, intron 7 of 10) -96859 ENSMUSG00000058248.12 ENSMUSG00000058248 ENSMUST00000151152 Kcnh1 protein_coding Interval_84233 chr19 8919779 8921015 + 0 NA promoter-TSS (ENSMUSG00000071649.6) protein_coding-promoter-TSS (ENSMUSG00000071649.6) -87 ENSMUSG00000071649.6 ENSMUSG00000071649 ENSMUST00000237071 B3gat3 protein_coding Interval_33523 chr11 117027526 117029049 + 0 NA Intergenic Intergenic 11901 ENSMUSG00000086902.7 ENSMUSG00000086902 ENSMUST00000152401 Gm11728 lincRNA Interval_86884 chr19 44629528 44629960 + 0 NA intron (ENSMUSG00000117911.1, intron 3 of 7) lincRNA-intron (ENSMUSG00000117911.1, intron 3 of 6) 14982 ENSMUSG00000117911.1 ENSMUSG00000117911 ENSMUST00000236677 Gm35460 lincRNA Interval_136967 chr6 65129432 65129652 + 0 NA TTS (ENSMUSG00000090939.1) processed_pseudogene-TTS (ENSMUSG00000090939.1) 971 ENSMUSG00000090939.1 ENSMUSG00000090939 ENSMUST00000164176 Gm17147 processed_pseudogene Interval_73075 chr17 34626236 34628216 + 0 NA promoter-TSS (ENSMUSG00000015474.16) protein_coding-promoter-TSS (ENSMUSG00000015474.16) -78 ENSMUSG00000015474.16 ENSMUSG00000015474 ENSMUST00000169287 Ppt2 protein_coding Interval_112719 chr4 44379096 44379474 + 0 NA Intergenic Intergenic -3637 ENSMUSG00000083803.1 ENSMUSG00000083803 ENSMUST00000121242 Gm12455 processed_pseudogene Interval_130327 chr5 125786386 125787594 + 0 NA exon (ENSMUSG00000070498.3, exon 9 of 9) protein_coding-exon (ENSMUSG00000070498.3, exon 9 of 9) 61750 ENSMUSG00000091970.3 ENSMUSG00000091970 ENSMUST00000164138 Gm4868 processed_pseudogene Interval_103328 chr3 38830248 38831444 + 0 NA Intergenic Intergenic 57413 ENSMUSG00000086181.1 ENSMUSG00000086181 ENSMUST00000153659 C230034O21Rik antisense Interval_90533 chr2 31006273 31006608 + 0 NA TTS (ENSMUSG00000026854.16) protein_coding-TTS (ENSMUSG00000026854.16) 24106 ENSMUSG00000026854.16 ENSMUSG00000026854 ENSMUST00000127776 Usp20 protein_coding Interval_52833 chr14 50955535 50956584 + 0 NA promoter-TSS (ENSMUSG00000068417.8) protein_coding-promoter-TSS (ENSMUSG00000068417.8) -185 ENSMUSG00000068417.8 ENSMUSG00000068417 ENSMUST00000228593 Pnp2 protein_coding Interval_71767 chr17 25957411 25958364 + 0 NA TTS (ENSMUSG00000037326.10) protein_coding-TTS (ENSMUSG00000037326.10) -5322 ENSMUSG00000025727.8 ENSMUSG00000025727 ENSMUST00000162431 A930017K11Rik protein_coding Interval_96632 chr2 126663715 126665527 + 0 NA intron (ENSMUSG00000027361.15, intron 1 of 8) protein_coding-intron (ENSMUSG00000027361.15, intron 1 of 8) -1331 ENSMUSG00000027361.15 ENSMUSG00000027361 ENSMUST00000137335 Gabpb1 protein_coding Interval_118010 chr4 127969907 127972100 + 0 NA promoter-TSS (ENSMUSG00000028813.2) protein_coding-promoter-TSS (ENSMUSG00000028813.2) -52 ENSMUSG00000028813.2 ENSMUSG00000028813 ENSMUST00000030614 CK137956 protein_coding Interval_153457 chr7 144914406 144915609 + 0 NA promoter-TSS (ENSMUSG00000031072.14) protein_coding-promoter-TSS (ENSMUSG00000031072.14) 537 ENSMUSG00000115783.1 ENSMUSG00000115783 ENSMUST00000227063 Bc1 lincRNA Interval_108750 chr3 131034004 131034935 + 0 NA Intergenic Intergenic -8099 ENSMUSG00000104859.1 ENSMUSG00000104859 ENSMUST00000197848 A430072C10Rik TEC Interval_9225 chr1 155223397 155225015 + 0 NA intron (ENSMUSG00000033722.9, intron 5 of 9) protein_coding-intron (ENSMUSG00000033722.9, intron 2 of 6) 1219 ENSMUSG00000033722.9 ENSMUSG00000033722 ENSMUST00000188492 BC034090 protein_coding Interval_85081 chr19 22337457 22337684 + 0 NA intron (ENSMUSG00000052387.16, intron 1 of 24) protein_coding-intron (ENSMUSG00000052387.16, intron 1 of 24) -101952 ENSMUSG00000088558.1 ENSMUSG00000088558 ENSMUST00000157933 Gm22506 snoRNA Interval_114733 chr4 84545074 84546236 + 0 NA TTS (ENSMUSG00000028487.18) protein_coding-TTS (ENSMUSG00000028487.18) -116531 ENSMUSG00000083743.1 ENSMUSG00000083743 ENSMUST00000119071 Gm12421 processed_pseudogene Interval_138988 chr6 94043163 94043968 + 0 NA intron (ENSMUSG00000045095.16, intron 1 of 24) protein_coding-intron (ENSMUSG00000045095.16, intron 1 of 21) -131061 ENSMUSG00000045095.16 ENSMUSG00000045095 ENSMUST00000203034 Magi1 protein_coding Interval_110343 chr3 157148308 157148504 + 0 NA intron (ENSMUSG00000040037.13, intron 5 of 6) protein_coding-intron (ENSMUSG00000040037.13, intron 5 of 6) 60454 ENSMUSG00000102322.1 ENSMUSG00000102322 ENSMUST00000195173 4930566N20Rik TEC Interval_18633 chr10 88707768 88709652 + 0 NA Intergenic Intergenic 1417 ENSMUSG00000065005.1 ENSMUSG00000065005 ENSMUST00000083071 n-R5s79 rRNA Interval_123837 chr5 35851008 35852160 + 0 NA intron (ENSMUSG00000029095.17, intron 2 of 4) protein_coding-intron (ENSMUSG00000029095.17, intron 13 of 19) -6310 ENSMUSG00000029095.17 ENSMUSG00000029095 ENSMUST00000153529 Ablim2 protein_coding Interval_144068 chr7 19281848 19283209 + 0 NA promoter-TSS (ENSMUSG00000030401.16) protein_coding-promoter-TSS (ENSMUSG00000030401.16) -107 ENSMUSG00000030401.16 ENSMUSG00000030401 ENSMUST00000108468 Rtn2 protein_coding Interval_97842 chr2 144387514 144388162 + 0 NA intron (ENSMUSG00000027425.18, intron 4 of 10) protein_coding-intron (ENSMUSG00000027425.18, intron 4 of 10) 18842 ENSMUSG00000098387.2 ENSMUSG00000098387 ENSMUST00000183618 Pet117 protein_coding Interval_136862 chr6 61686996 61687608 + 0 NA intron (ENSMUSG00000039578.17, intron 4 of 4) protein_coding-intron (ENSMUSG00000039578.17, intron 6 of 9) -269387 ENSMUSG00000039578.17 ENSMUSG00000039578 ENSMUST00000232648 Ccser1 protein_coding Interval_25655 chr11 50439763 50440862 + 0 NA Intergenic Intergenic -25737 ENSMUSG00000020375.9 ENSMUSG00000020375 ENSMUST00000129304 Rufy1 protein_coding Interval_61898 chr15 85017029 85017837 + 0 NA intron (ENSMUSG00000022435.6, intron 1 of 5) protein_coding-intron (ENSMUSG00000022435.6, intron 1 of 5) 292 ENSMUSG00000022435.6 ENSMUSG00000022435 ENSMUST00000023070 Upk3a protein_coding Interval_43749 chr13 35982623 35983067 + 0 NA intron (ENSMUSG00000046573.7, intron 2 of 2) protein_coding-intron (ENSMUSG00000046573.7, intron 2 of 2) 8675 ENSMUSG00000114251.1 ENSMUSG00000114251 ENSMUST00000224867 Tmed10-ps processed_pseudogene Interval_27458 chr11 67965242 67966883 + 0 NA promoter-TSS (ENSMUSG00000020903.13) protein_coding-promoter-TSS (ENSMUSG00000020903.13) -430 ENSMUSG00000020903.13 ENSMUSG00000020903 ENSMUST00000142649 Stx8 protein_coding Interval_135651 chr6 42340149 42340473 + 0 NA intron (ENSMUSG00000108033.1, intron 1 of 1) antisense-intron (ENSMUSG00000108033.1, intron 1 of 1) -2528 ENSMUSG00000065206.1 ENSMUSG00000065206 ENSMUST00000083272 Gm24611 snRNA Interval_33587 chr11 117379051 117379272 + 0 NA Intergenic Intergenic -35228 ENSMUSG00000086588.1 ENSMUSG00000086588 ENSMUST00000124901 Gm11729 lincRNA Interval_139216 chr6 97248518 97248976 + 0 NA intron (ENSMUSG00000044086.8, intron 1 of 2) protein_coding-intron (ENSMUSG00000044086.8, intron 1 of 2) 4012 ENSMUSG00000044086.8 ENSMUSG00000044086 ENSMUST00000095655 Lmod3 protein_coding Interval_166785 chr9 62676813 62678998 + 0 NA promoter-TSS (ENSMUSG00000032243.8) protein_coding-promoter-TSS (ENSMUSG00000032243.8) 45 ENSMUSG00000032243.8 ENSMUSG00000032243 ENSMUST00000159012 Itga11 protein_coding Interval_92351 chr2 59202872 59203808 + 0 NA intron (ENSMUSG00000026991.20, intron 2 of 3) protein_coding-intron (ENSMUSG00000026991.20, intron 1 of 21) 41413 ENSMUSG00000026991.20 ENSMUSG00000026991 ENSMUST00000124127 Pkp4 protein_coding Interval_127484 chr5 104385300 104386535 + 0 NA Intergenic Intergenic -49204 ENSMUSG00000105954.1 ENSMUSG00000105954 ENSMUST00000199139 Gm42793 TEC Interval_100905 chr2 173264113 173265394 + 0 NA intron (ENSMUSG00000038400.15, intron 1 of 3) protein_coding-intron (ENSMUSG00000038400.15, intron 1 of 3) 11436 ENSMUSG00000038400.15 ENSMUSG00000038400 ENSMUST00000124124 Pmepa1 protein_coding Interval_47264 chr13 80081052 80081539 + 0 NA intron (ENSMUSG00000100168.2, intron 1 of 2) lincRNA-intron (ENSMUSG00000100168.2, intron 1 of 2) 18123 ENSMUSG00000114287.1 ENSMUSG00000114287 ENSMUST00000224279 Gm5197 processed_pseudogene Interval_61058 chr15 78998412 78998736 + 0 NA intron (ENSMUSG00000116505.1, intron 2 of 2) protein_coding-intron (ENSMUSG00000033088.19, intron 7 of 13) -3649 ENSMUSG00000099180.1 ENSMUSG00000099180 ENSMUST00000183598 Mir6956 miRNA Interval_56354 chr14 118001178 118002041 + 0 NA Intergenic Intergenic 25926 ENSMUSG00000022129.4 ENSMUSG00000022129 ENSMUST00000227850 Dct protein_coding Interval_49313 chr13 110633261 110633872 + 0 NA intron (ENSMUSG00000109853.1, intron 3 of 4) lincRNA-intron (ENSMUSG00000109853.1, intron 3 of 5) 5570 ENSMUSG00000109853.1 ENSMUSG00000109853 ENSMUST00000211420 Gm33045 lincRNA Interval_145181 chr7 30492916 30493945 + 0 NA promoter-TSS (ENSMUSG00000036892.12) protein_coding-promoter-TSS (ENSMUSG00000036892.12) -229 ENSMUSG00000036892.12 ENSMUSG00000036892 ENSMUST00000122876 Prodh2 protein_coding Interval_155474 chr8 33811834 33814696 + 0 NA promoter-TSS (ENSMUSG00000097442.1) antisense-promoter-TSS (ENSMUSG00000097442.1) 62 ENSMUSG00000097442.1 ENSMUSG00000097442 ENSMUST00000181120 Gm26632 antisense Interval_167757 chr9 72567091 72567787 + 0 NA intron (ENSMUSG00000037674.15, intron 2 of 5) protein_coding-intron (ENSMUSG00000037674.15, intron 1 of 8) 15711 ENSMUSG00000099310.1 ENSMUSG00000099310 ENSMUST00000183619 Gm19427 processed_pseudogene Interval_73479 chr17 37824054 37824457 + 0 NA Intergenic Intergenic -8694 ENSMUSG00000050613.5 ENSMUSG00000050613 ENSMUST00000050255 Olfr125 protein_coding Interval_142542 chr6 143166110 143167865 + 0 NA promoter-TSS (ENSMUSG00000030275.6) protein_coding-promoter-TSS (ENSMUSG00000030275.6) -267 ENSMUSG00000030275.6 ENSMUSG00000030275 ENSMUST00000205256 Etnk1 protein_coding Interval_103514 chr3 46035268 46035587 + 0 NA Intergenic Intergenic 56849 ENSMUSG00000089584.1 ENSMUSG00000089584 ENSMUST00000158959 Gm23337 snRNA Interval_96884 chr2 129211952 129213016 + 0 NA TTS (ENSMUSG00000027397.14) protein_coding-TTS (ENSMUSG00000027397.14) -6544 ENSMUSG00000056738.11 ENSMUSG00000056738 ENSMUST00000148548 A730036I17Rik lincRNA Interval_109348 chr3 139472333 139472569 + 0 NA intron (ENSMUSG00000047940.13, intron 11 of 13) protein_coding-intron (ENSMUSG00000047940.13, intron 11 of 13) -54588 ENSMUSG00000065675.1 ENSMUSG00000065675 ENSMUST00000083741 Gm24260 snRNA Interval_84323 chr19 10116396 10116946 + 0 NA Intergenic Intergenic -45484 ENSMUSG00000024665.8 ENSMUSG00000024665 ENSMUST00000235937 Fads2 protein_coding Interval_45581 chr13 56050798 56051168 + 0 NA intron (ENSMUSG00000114493.2, intron 5 of 5) antisense-intron (ENSMUSG00000114493.2, intron 2 of 2) -20749 ENSMUSG00000114229.1 ENSMUSG00000114229 ENSMUST00000225745 Gm47072 processed_pseudogene Interval_113473 chr4 55254925 55255136 + 0 NA exon (ENSMUSG00000081504.3, exon 1 of 1) processed_pseudogene-exon (ENSMUSG00000081504.3, exon 1 of 1) 290 ENSMUSG00000081504.3 ENSMUSG00000081504 ENSMUST00000121282 Gm12508 processed_pseudogene Interval_6101 chr1 96876151 96876379 + 0 NA intron (ENSMUSG00000097814.5, intron 3 of 3) antisense-intron (ENSMUSG00000097814.5, intron 1 of 1) 4032 ENSMUSG00000097814.5 ENSMUSG00000097814 ENSMUST00000202118 Panct2 antisense Interval_26528 chr11 58427376 58428079 + 0 NA Intergenic Intergenic -4832 ENSMUSG00000058287.5 ENSMUSG00000058287 ENSMUST00000108825 Gm12253 protein_coding Interval_118709 chr4 133307270 133308231 + 0 NA intron (ENSMUSG00000037622.14, intron 6 of 15) protein_coding-intron (ENSMUSG00000037622.14, intron 6 of 15) 14480 ENSMUSG00000037622.14 ENSMUSG00000037622 ENSMUST00000140976 Wdtc1 protein_coding Interval_57971 chr15 25791114 25792292 + 0 NA intron (ENSMUSG00000022272.17, intron 27 of 40) protein_coding-intron (ENSMUSG00000022272.17, intron 7 of 20) 23147 ENSMUSG00000022272.17 ENSMUSG00000022272 ENSMUST00000145587 Myo10 protein_coding Interval_156710 chr8 57511080 57512596 + 0 NA promoter-TSS (ENSMUSG00000054717.7) protein_coding-promoter-TSS (ENSMUSG00000054717.7) -710 ENSMUSG00000054717.7 ENSMUSG00000054717 ENSMUST00000211198 Hmgb2 protein_coding Interval_1125 chr1 15860430 15861096 + 0 NA intron (ENSMUSG00000032719.4, intron 2 of 4) protein_coding-intron (ENSMUSG00000032719.4, intron 2 of 4) 7432 ENSMUSG00000104379.1 ENSMUSG00000104379 ENSMUST00000194867 Gm37509 TEC Interval_109907 chr3 150846289 150846605 + 0 NA Intergenic Intergenic 177415 ENSMUSG00000092830.1 ENSMUSG00000092830 ENSMUST00000175089 Mir3963 miRNA Interval_68003 chr16 63002878 63003671 + 0 NA promoter-TSS (ENSMUSG00000116574.1) lincRNA-promoter-TSS (ENSMUSG00000116574.1) -164 ENSMUSG00000116574.1 ENSMUSG00000116574 ENSMUST00000231727 Gm18870 lincRNA Interval_54953 chr14 76455245 76456090 + 0 NA intron (ENSMUSG00000022010.19, intron 3 of 4) protein_coding-intron (ENSMUSG00000022010.19, intron 1 of 2) 36839 ENSMUSG00000022010.19 ENSMUSG00000022010 ENSMUST00000133224 Tsc22d1 protein_coding Interval_46152 chr13 62054732 62055410 + 0 NA intron (ENSMUSG00000114036.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000114036.1, intron 1 of 1) 19649 ENSMUSG00000074868.2 ENSMUSG00000074868 ENSMUST00000099450 Gm6478 processed_pseudogene Interval_11899 chr1 186888870 186889342 + 0 NA Intergenic Intergenic -37856 ENSMUSG00000103503.1 ENSMUSG00000103503 ENSMUST00000194671 1700023G09Rik lincRNA Interval_167878 chr9 73245703 73246287 + 0 NA intron (ENSMUSG00000098875.1, intron 3 of 3) lincRNA-intron (ENSMUSG00000098875.1, intron 3 of 3) 53512 ENSMUSG00000098875.1 ENSMUSG00000098875 ENSMUST00000183507 Gm27211 lincRNA Interval_69199 chr16 91295640 91296073 + 0 NA intron (ENSMUSG00000085865.2, intron 1 of 2) lincRNA-intron (ENSMUSG00000085865.2, intron 2 of 3) 26084 ENSMUSG00000046160.6 ENSMUSG00000046160 ENSMUST00000056882 Olig1 protein_coding Interval_96106 chr2 119789486 119790657 + 0 NA Intergenic Intergenic -2551 ENSMUSG00000034032.15 ENSMUSG00000034032 ENSMUST00000141800 Rpap1 protein_coding Interval_58306 chr15 32141578 32141752 + 0 NA Intergenic Intergenic -35624 ENSMUSG00000045267.3 ENSMUSG00000045267 ENSMUST00000057633 Tas2r119 protein_coding Interval_39153 chr12 85485655 85486717 + 0 NA Intergenic Intergenic 11495 ENSMUSG00000021250.13 ENSMUSG00000021250 ENSMUST00000134311 Fos protein_coding Interval_114379 chr4 74408859 74409080 + 0 NA Intergenic Intergenic 146160 ENSMUSG00000028397.13 ENSMUSG00000028397 ENSMUST00000150439 Kdm4c protein_coding Interval_26677 chr11 59644437 59645033 + 0 NA Intergenic Intergenic 34150 ENSMUSG00000044061.7 ENSMUSG00000044061 ENSMUST00000055276 Olfr225 polymorphic_pseudogene Interval_10899 chr1 176748198 176748484 + 0 NA intron (ENSMUSG00000057335.11, intron 14 of 19) protein_coding-intron (ENSMUSG00000057335.11, intron 14 of 19) -1359 ENSMUSG00000103634.1 ENSMUSG00000103634 ENSMUST00000192113 3110062G12Rik TEC Interval_90978 chr2 33886682 33888096 + 0 NA promoter-TSS (ENSMUSG00000038740.9) protein_coding-promoter-TSS (ENSMUSG00000038740.9) 54756 ENSMUSG00000085987.2 ENSMUSG00000085987 ENSMUST00000134271 Gm13403 lincRNA Interval_79311 chr18 30354422 30355726 + 0 NA Intergenic Intergenic 64986 ENSMUSG00000117345.1 ENSMUSG00000117345 ENSMUST00000234753 Gm7926 processed_pseudogene Interval_24238 chr11 31726465 31727542 + 0 NA Intergenic Intergenic 28355 ENSMUSG00000103635.1 ENSMUSG00000103635 ENSMUST00000192490 Gm38061 TEC Interval_84284 chr19 9842896 9843313 + 0 NA Intergenic Intergenic -4458 ENSMUSG00000096872.2 ENSMUSG00000096872 ENSMUST00000179814 Scgb2a2 protein_coding Interval_57049 chr15 5121488 5122530 + 0 NA promoter-TSS (ENSMUSG00000068706.3) processed_pseudogene-promoter-TSS (ENSMUSG00000068706.3) -874 ENSMUSG00000068706.3 ENSMUSG00000068706 ENSMUST00000090488 Gm10250 processed_pseudogene Interval_67861 chr16 58238390 58239830 + 0 NA exon (ENSMUSG00000116717.1, exon 1 of 3) lincRNA-exon (ENSMUSG00000116717.1, exon 1 of 3) 1006 ENSMUSG00000116717.1 ENSMUSG00000116717 ENSMUST00000231686 Gm49574 lincRNA Interval_119902 chr4 140774208 140774814 + 0 NA promoter-TSS (ENSMUSG00000025330.6) protein_coding-promoter-TSS (ENSMUSG00000025330.6) -12734 ENSMUSG00000025330.6 ENSMUSG00000025330 ENSMUST00000137440 Padi4 protein_coding Interval_102941 chr3 32991844 32992425 + 0 NA intron (ENSMUSG00000027674.16, intron 8 of 14) protein_coding-intron (ENSMUSG00000027674.16, intron 8 of 14) 17458 ENSMUSG00000104283.1 ENSMUSG00000104283 ENSMUST00000195007 Gm37459 antisense Interval_44940 chr13 50388814 50389991 + 0 NA intron (ENSMUSG00000101136.1, intron 1 of 1) antisense-intron (ENSMUSG00000101136.1, intron 1 of 1) -41719 ENSMUSG00000037816.10 ENSMUSG00000037816 ENSMUST00000176543 Fbxw17 protein_coding Interval_59149 chr15 44909644 44911001 + 0 NA Intergenic Intergenic -30220 ENSMUSG00000089137.1 ENSMUSG00000089137 ENSMUST00000158512 Gm24768 snRNA Interval_28552 chr11 76672229 76673319 + 0 NA exon (ENSMUSG00000044243.3, exon 1 of 1) protein_coding-exon (ENSMUSG00000044243.3, exon 1 of 1) 304 ENSMUSG00000044243.3 ENSMUSG00000044243 ENSMUST00000056184 Bhlha9 protein_coding Interval_11066 chr1 179121499 179122429 + 0 NA intron (ENSMUSG00000055067.15, intron 5 of 11) protein_coding-intron (ENSMUSG00000055067.15, intron 2 of 8) -204350 ENSMUSG00000089713.1 ENSMUSG00000089713 ENSMUST00000162545 Gm16564 antisense Interval_152541 chr7 134029241 134029457 + 0 NA intron (ENSMUSG00000054555.11, intron 3 of 6) protein_coding-intron (ENSMUSG00000054555.11, intron 3 of 22) 70929 ENSMUSG00000108478.1 ENSMUSG00000108478 ENSMUST00000206856 Gm19514 TEC Interval_133859 chr6 13632697 13632958 + 0 NA intron (ENSMUSG00000042742.7, intron 3 of 3) protein_coding-intron (ENSMUSG00000042742.7, intron 3 of 4) -24783 ENSMUSG00000029569.9 ENSMUSG00000029569 ENSMUST00000138637 Tmem168 protein_coding Interval_62046 chr15 86076334 86076554 + 0 NA intron (ENSMUSG00000035900.18, intron 1 of 1) protein_coding-intron (ENSMUSG00000035900.18, intron 1 of 18) 1711 ENSMUSG00000035900.18 ENSMUSG00000035900 ENSMUST00000147286 Gramd4 protein_coding Interval_132001 chr5 142141817 142142579 + 0 NA intron (ENSMUSG00000039683.16, intron 32 of 44) protein_coding-intron (ENSMUSG00000039683.16, intron 28 of 40) -140908 ENSMUSG00000097947.1 ENSMUSG00000097947 ENSMUST00000182990 Gm26970 processed_pseudogene Interval_109125 chr3 135993685 135994082 + 0 NA intron (ENSMUSG00000104710.1, intron 1 of 3) antisense-intron (ENSMUSG00000104710.1, intron 1 of 3) -30125 ENSMUSG00000105937.1 ENSMUSG00000105937 ENSMUST00000196772 Gm43602 processed_pseudogene Interval_88375 chr2 4548925 4551591 + 0 NA intron (ENSMUSG00000026657.17, intron 12 of 24) protein_coding-intron (ENSMUSG00000026657.17, intron 11 of 23) 37029 ENSMUSG00000086018.7 ENSMUSG00000086018 ENSMUST00000137801 Gm13179 antisense Interval_105507 chr3 87136720 87137292 + 0 NA intron (ENSMUSG00000041734.15, intron 2 of 15) protein_coding-intron (ENSMUSG00000041734.15, intron 2 of 13) -20687 ENSMUSG00000102893.1 ENSMUSG00000102893 ENSMUST00000192571 Gm37855 lincRNA Interval_119301 chr4 136732385 136733515 + 0 NA intron (ENSMUSG00000028664.14, intron 3 of 15) protein_coding-intron (ENSMUSG00000028664.14, intron 3 of 15) -38910 ENSMUSG00000028664.14 ENSMUSG00000028664 ENSMUST00000144573 Ephb2 protein_coding Interval_74516 chr17 52692141 52692570 + 0 NA intron (ENSMUSG00000035580.10, intron 1 of 15) protein_coding-intron (ENSMUSG00000035580.10, intron 1 of 15) -89695 ENSMUSG00000098552.1 ENSMUSG00000098552 ENSMUST00000183438 Gm27217 antisense Interval_36464 chr12 45215829 45217080 + 0 NA Intergenic Intergenic 107447 ENSMUSG00000088852.1 ENSMUSG00000088852 ENSMUST00000158227 Gm24731 snoRNA Interval_43947 chr13 38241030 38241319 + 0 NA Intergenic Intergenic 25238 ENSMUSG00000021431.15 ENSMUSG00000021431 ENSMUST00000223893 Snrnp48 protein_coding Interval_35925 chr12 32009394 32010475 + 0 NA intron (ENSMUSG00000002997.15, intron 2 of 10) protein_coding-intron (ENSMUSG00000002997.15, intron 2 of 11) 50655 ENSMUSG00000002997.15 ENSMUSG00000002997 ENSMUST00000146865 Prkar2b protein_coding Interval_147415 chr7 66659775 66661962 + 0 NA intron (ENSMUSG00000030509.17, intron 4 of 5) protein_coding-intron (ENSMUSG00000030509.17, intron 4 of 5) 28647 ENSMUSG00000030509.17 ENSMUSG00000030509 ENSMUST00000208059 Asb7 protein_coding Interval_136496 chr6 54939410 54940834 + 0 NA promoter-TSS (ENSMUSG00000038058.14) protein_coding-promoter-TSS (ENSMUSG00000038058.14) -271 ENSMUSG00000038058.14 ENSMUSG00000038058 ENSMUST00000203837 Nod1 protein_coding Interval_19463 chr10 99619181 99619917 + 0 NA intron (ENSMUSG00000111962.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000111962.1, intron 1 of 2) 10378 ENSMUSG00000111962.1 ENSMUSG00000111962 ENSMUST00000218263 Gm20110 lincRNA Interval_100884 chr2 173102002 173102322 + 0 NA intron (ENSMUSG00000070495.11, intron 8 of 11) protein_coding-intron (ENSMUSG00000070495.11, intron 8 of 10) 17363 ENSMUSG00000070495.11 ENSMUSG00000070495 ENSMUST00000179693 Ctcfl protein_coding Interval_143670 chr7 14303960 14304444 + 0 NA promoter-TSS (ENSMUSG00000098506.2) processed_pseudogene-promoter-TSS (ENSMUSG00000098506.2) -578 ENSMUSG00000098506.2 ENSMUSG00000098506 ENSMUST00000185066 Phf20-ps processed_pseudogene Interval_41383 chr12 113201301 113201968 + 0 NA Intergenic Intergenic -12515 ENSMUSG00000087842.1 ENSMUSG00000087842 ENSMUST00000157217 Gm25622 snRNA Interval_61606 chr15 82924171 82925441 + 0 NA intron (ENSMUSG00000041852.15, intron 1 of 1) protein_coding-intron (ENSMUSG00000041852.15, intron 1 of 1) -24995 ENSMUSG00000041852.15 ENSMUSG00000041852 ENSMUST00000229439 Tcf20 protein_coding Interval_35265 chr12 19223675 19224426 + 0 NA Intergenic Intergenic 5968 ENSMUSG00000113110.1 ENSMUSG00000113110 ENSMUST00000221548 Gm48528 processed_pseudogene Interval_147357 chr7 66079017 66080213 + 0 NA promoter-TSS (ENSMUSG00000075701.9) protein_coding-promoter-TSS (ENSMUSG00000075701.9) -63 ENSMUSG00000075701.9 ENSMUSG00000075701 ENSMUST00000206044 Selenos protein_coding Interval_93132 chr2 70473299 70473598 + 0 NA Intergenic Intergenic -1475 ENSMUSG00000075304.2 ENSMUSG00000075304 ENSMUST00000100043 Sp5 protein_coding Interval_9236 chr1 155346851 155347160 + 0 NA intron (ENSMUSG00000026469.14, intron 2 of 6) protein_coding-intron (ENSMUSG00000026469.14, intron 2 of 14) 31039 ENSMUSG00000093286.1 ENSMUSG00000093286 ENSMUST00000175545 Gm22569 miRNA Interval_88082 chr19 58906600 58906871 + 0 NA intron (ENSMUSG00000025092.7, intron 2 of 6) protein_coding-intron (ENSMUSG00000025092.7, intron 2 of 6) 5024 ENSMUSG00000092813.1 ENSMUSG00000092813 ENSMUST00000175072 Mir3086 miRNA Interval_68566 chr16 78845544 78846717 + 0 NA Intergenic Intergenic -85147 ENSMUSG00000022860.15 ENSMUSG00000022860 ENSMUST00000231883 Chodl protein_coding Interval_161248 chr8 119195732 119196593 + 0 NA intron (ENSMUSG00000031841.19, intron 1 of 3) protein_coding-intron (ENSMUSG00000031841.19, intron 7 of 13) 44697 ENSMUSG00000031841.19 ENSMUSG00000031841 ENSMUST00000151842 Cdh13 protein_coding Interval_20466 chr10 117775727 117776786 + 0 NA TTS (ENSMUSG00000052798.13) protein_coding-TTS (ENSMUSG00000052798.13) 16395 ENSMUSG00000052798.13 ENSMUSG00000052798 ENSMUST00000220203 Nup107 protein_coding Interval_49777 chr13 114966462 114966758 + 0 NA intron (ENSMUSG00000042284.10, intron 26 of 28) protein_coding-intron (ENSMUSG00000042284.10, intron 26 of 28) -31542 ENSMUSG00000114703.1 ENSMUSG00000114703 ENSMUST00000225140 Gm47776 processed_pseudogene Interval_129664 chr5 121609405 121610039 + 0 NA intron (ENSMUSG00000042647.13, intron 2 of 3) protein_coding-intron (ENSMUSG00000042647.13, intron 3 of 10) 9141 ENSMUSG00000042647.13 ENSMUSG00000042647 ENSMUST00000197916 Acad12 protein_coding Interval_98896 chr2 155874230 155874696 + 0 NA intron (ENSMUSG00000005882.18, intron 7 of 7) protein_coding-intron (ENSMUSG00000005882.18, intron 4 of 6) -39609 ENSMUSG00000074647.4 ENSMUSG00000074647 ENSMUST00000239423 Fam83c protein_coding Interval_76636 chr17 83030926 83031298 + 0 NA Intergenic Intergenic -37793 ENSMUSG00000100154.1 ENSMUSG00000100154 ENSMUST00000187700 Gm29052 lincRNA Interval_9360 chr1 156578361 156578855 + 0 NA intron (ENSMUSG00000026596.13, intron 1 of 2) protein_coding-intron (ENSMUSG00000026596.13, intron 1 of 11) -4500 ENSMUSG00000104293.1 ENSMUSG00000104293 ENSMUST00000195501 Gm38043 TEC Interval_45570 chr13 55943725 55944239 + 0 NA intron (ENSMUSG00000114493.2, intron 3 of 5) antisense-intron (ENSMUSG00000114493.2, intron 3 of 5) 86252 ENSMUSG00000114229.1 ENSMUSG00000114229 ENSMUST00000225745 Gm47072 processed_pseudogene Interval_148236 chr7 80033791 80034378 + 0 NA intron (ENSMUSG00000048897.15, intron 1 of 1) protein_coding-intron (ENSMUSG00000048897.15, intron 1 of 4) -2621 ENSMUSG00000108365.1 ENSMUSG00000108365 ENSMUST00000206449 Gm44951 TEC Interval_50940 chr14 20902031 20902781 + 0 NA Intergenic Intergenic -26992 ENSMUSG00000021823.10 ENSMUSG00000021823 ENSMUST00000224380 Vcl protein_coding Interval_38633 chr12 80705986 80706344 + 0 NA promoter-TSS (ENSMUSG00000066438.6) protein_coding-promoter-TSS (ENSMUSG00000066438.6) -13699 ENSMUSG00000044062.7 ENSMUSG00000044062 ENSMUST00000153297 Plekhd1os antisense Interval_87806 chr19 56052232 56052562 + 0 NA Intergenic Intergenic 17301 ENSMUSG00000117827.1 ENSMUSG00000117827 ENSMUST00000236136 D730002M21Rik lincRNA Interval_31807 chr11 103051228 103052330 + 0 NA intron (ENSMUSG00000020936.8, intron 2 of 5) protein_coding-intron (ENSMUSG00000020936.8, intron 3 of 11) 23194 ENSMUSG00000020936.8 ENSMUSG00000020936 ENSMUST00000148795 Nmt1 protein_coding Interval_37047 chr12 56863793 56864117 + 0 NA intron (ENSMUSG00000035472.14, intron 3 of 10) protein_coding-intron (ENSMUSG00000035472.14, intron 2 of 9) -170991 ENSMUSG00000089894.2 ENSMUSG00000089894 ENSMUST00000159874 Gm15524 antisense Interval_156268 chr8 46671654 46671917 + 0 NA intron (ENSMUSG00000097534.3, intron 4 of 4) bidirectional_promoter_lncRNA-intron (ENSMUSG00000097534.3, intron 4 of 4) 54494 ENSMUSG00000031628.9 ENSMUSG00000031628 ENSMUST00000210534 Casp3 protein_coding Interval_155862 chr8 40367865 40369017 + 0 NA intron (ENSMUSG00000039478.15, intron 2 of 7) protein_coding-intron (ENSMUSG00000039478.15, intron 9 of 14) 14138 ENSMUSG00000039478.15 ENSMUSG00000039478 ENSMUST00000132481 Micu3 protein_coding Interval_18014 chr10 81363718 81367548 + 0 NA promoter-TSS (ENSMUSG00000020234.10) protein_coding-promoter-TSS (ENSMUSG00000020234.10) -779 ENSMUSG00000020234.10 ENSMUSG00000020234 ENSMUST00000130762 4930404N11Rik protein_coding Interval_136099 chr6 50949469 50950933 + 0 NA Intergenic Intergenic -17067 ENSMUSG00000108153.1 ENSMUSG00000108153 ENSMUST00000203677 Gm44402 processed_pseudogene Interval_121516 chr5 3099190 3099357 + 0 NA promoter-TSS (ENSMUSG00000106399.1) processed_pseudogene-promoter-TSS (ENSMUSG00000106399.1) -117 ENSMUSG00000106399.1 ENSMUSG00000106399 ENSMUST00000195920 Gm43530 processed_pseudogene Interval_92177 chr2 55354281 55354983 + 0 NA Intergenic Intergenic -57158 ENSMUSG00000087040.1 ENSMUSG00000087040 ENSMUST00000128307 Gm14033 lincRNA Interval_6121 chr1 97660676 97662430 + 0 NA exon (ENSMUSG00000044768.16, exon 1 of 3) protein_coding-exon (ENSMUSG00000044768.16, exon 1 of 3) 123 ENSMUSG00000044768.16 ENSMUSG00000044768 ENSMUST00000142234 D1Ertd622e protein_coding Interval_136600 chr6 56476765 56476967 + 0 NA intron (ENSMUSG00000004347.17, intron 3 of 19) protein_coding-intron (ENSMUSG00000004347.17, intron 2 of 18) 106980 ENSMUSG00000096087.1 ENSMUSG00000096087 ENSMUST00000104123 Gm24709 snoRNA Interval_97938 chr2 145921077 145921676 + 0 NA intron (ENSMUSG00000001767.5, intron 11 of 13) protein_coding-intron (ENSMUSG00000001767.5, intron 11 of 13) 13338 ENSMUSG00000001767.5 ENSMUSG00000001767 ENSMUST00000147904 Crnkl1 protein_coding Interval_3203 chr1 54805945 54806337 + 0 NA intron (ENSMUSG00000052331.14, intron 2 of 7) protein_coding-intron (ENSMUSG00000052331.14, intron 2 of 27) 36923 ENSMUSG00000089245.1 ENSMUSG00000089245 ENSMUST00000158620 Gm24053 miRNA Interval_53949 chr14 63681403 63681988 + 0 NA intron (ENSMUSG00000035067.9, intron 1 of 2) protein_coding-intron (ENSMUSG00000035067.9, intron 1 of 2) -45494 ENSMUSG00000076049.4 ENSMUSG00000076049 ENSMUST00000102094 Mir598 miRNA Interval_156617 chr8 54754366 54754684 + 0 NA intron (ENSMUSG00000039375.16, intron 3 of 4) protein_coding-intron (ENSMUSG00000039375.16, intron 3 of 4) 45490 ENSMUSG00000089719.1 ENSMUSG00000089719 ENSMUST00000162822 Gm15758 processed_transcript Interval_25239 chr11 45768918 45769895 + 0 NA Intergenic Intergenic -38681 ENSMUSG00000086686.1 ENSMUSG00000086686 ENSMUST00000137002 F630206G17Rik processed_transcript Interval_132046 chr5 142478210 142479510 + 0 NA TTS (ENSMUSG00000039623.13) protein_coding-TTS (ENSMUSG00000039623.13) 8709 ENSMUSG00000029576.17 ENSMUSG00000029576 ENSMUST00000129212 Radil protein_coding Interval_133005 chr5 149228763 149229735 + 0 NA Intergenic Intergenic -7905 ENSMUSG00000100783.1 ENSMUSG00000100783 ENSMUST00000189639 2310047D07Rik lincRNA Interval_138828 chr6 92251526 92252205 + 0 NA Intergenic Intergenic -7215 ENSMUSG00000005892.4 ENSMUSG00000005892 ENSMUST00000006046 Trh protein_coding Interval_117048 chr4 119219875 119220334 + 0 NA exon (ENSMUSG00000078584.9, exon 5 of 5) protein_coding-exon (ENSMUSG00000078584.9, exon 5 of 5) -1887 ENSMUSG00000028642.7 ENSMUSG00000028642 ENSMUST00000030394 Tmem269 protein_coding Interval_63441 chr15 101112911 101114071 + 0 NA Intergenic Intergenic -2958 ENSMUSG00000047034.10 ENSMUSG00000047034 ENSMUST00000231208 Ankrd33 protein_coding Interval_41692 chr12 117788339 117789589 + 0 NA Intergenic Intergenic 45387 ENSMUSG00000093544.1 ENSMUSG00000093544 ENSMUST00000175828 Gm20613 processed_pseudogene Interval_69819 chr16 96945048 96947081 + 0 NA intron (ENSMUSG00000050272.10, intron 3 of 32) protein_coding-intron (ENSMUSG00000050272.10, intron 3 of 32) 27332 ENSMUSG00000117324.1 ENSMUSG00000117324 ENSMUST00000232718 Gm32432 antisense Interval_38609 chr12 80518291 80520318 + 0 NA promoter-TSS (ENSMUSG00000097801.1) bidirectional_promoter_lncRNA-promoter-TSS (ENSMUSG00000097801.1) -388 ENSMUSG00000097801.1 ENSMUSG00000097801 ENSMUST00000181852 Gm26777 bidirectional_promoter_lncRNA Interval_115779 chr4 103933752 103934332 + 0 NA intron (ENSMUSG00000028519.16, intron 1 of 3) protein_coding-intron (ENSMUSG00000028519.16, intron 1 of 9) 5499 ENSMUSG00000080913.1 ENSMUSG00000080913 ENSMUST00000118859 Gm12719 processed_pseudogene Interval_65922 chr16 30264262 30264595 + 0 NA intron (ENSMUSG00000023176.9, intron 1 of 1) protein_coding-intron (ENSMUSG00000023176.9, intron 1 of 1) 3071 ENSMUSG00000023176.9 ENSMUSG00000023176 ENSMUST00000064856 Cpn2 protein_coding Interval_35085 chr12 17202735 17203889 + 0 NA Intergenic Intergenic -26424 ENSMUSG00000051726.6 ENSMUSG00000051726 ENSMUST00000170580 Kcnf1 protein_coding Interval_174590 chrX 159528172 159528864 + 0 NA intron (ENSMUSG00000044150.12, intron 2 of 3) protein_coding-intron (ENSMUSG00000044150.12, intron 2 of 3) -39020 ENSMUSG00000044150.12 ENSMUSG00000044150 ENSMUST00000154694 Bclaf3 protein_coding Interval_171688 chr9 120167709 120168769 + 0 NA TTS (ENSMUSG00000032517.16) protein_coding-TTS (ENSMUSG00000032517.16) -10799 ENSMUSG00000111219.1 ENSMUSG00000111219 ENSMUST00000216004 Gm38642 processed_transcript Interval_56212 chr14 113164576 113165068 + 0 NA Intergenic Intergenic 36001 ENSMUSG00000115260.1 ENSMUSG00000115260 ENSMUST00000227945 Gm49005 processed_pseudogene Interval_128116 chr5 111063414 111065130 + 0 NA intron (ENSMUSG00000033209.17, intron 2 of 22) protein_coding-intron (ENSMUSG00000033209.17, intron 2 of 23) 35720 ENSMUSG00000105890.1 ENSMUSG00000105890 ENSMUST00000197083 Gm42780 TEC Interval_13968 chr10 25170830 25171862 + 0 NA intron (ENSMUSG00000039166.16, intron 2 of 2) protein_coding-intron (ENSMUSG00000039166.16, intron 7 of 7) 49345 ENSMUSG00000039166.16 ENSMUSG00000039166 ENSMUST00000176231 Akap7 protein_coding Interval_76536 chr17 80833505 80834475 + 0 NA Intergenic Intergenic -62803 ENSMUSG00000112121.1 ENSMUSG00000112121 ENSMUST00000220067 C230072F16Rik lincRNA Interval_22994 chr11 18601452 18601689 + 0 NA intron (ENSMUSG00000085806.1, intron 3 of 6) lincRNA-intron (ENSMUSG00000085806.1, intron 3 of 6) -23091 ENSMUSG00000081101.1 ENSMUSG00000081101 ENSMUST00000118819 Gm12024 processed_pseudogene Interval_155515 chr8 34059252 34059904 + 0 NA Intergenic Intergenic 4956 ENSMUSG00000054618.8 ENSMUSG00000054618 ENSMUST00000149618 Gm9951 lincRNA Interval_147153 chr7 63901829 63902061 + 0 NA intron (ENSMUSG00000052040.10, intron 1 of 1) protein_coding-intron (ENSMUSG00000052040.10, intron 1 of 1) 3971 ENSMUSG00000098708.7 ENSMUSG00000098708 ENSMUST00000184360 Gm27252 processed_transcript Interval_60611 chr15 75660169 75660444 + 0 NA intron (ENSMUSG00000000934.9, intron 12 of 13) protein_coding-intron (ENSMUSG00000000934.9, intron 12 of 13) -1101 ENSMUSG00000085523.1 ENSMUSG00000085523 ENSMUST00000146755 Gm15945 antisense Interval_103735 chr3 52196037 52196923 + 0 NA intron (ENSMUSG00000103655.1, intron 2 of 3) lincRNA-intron (ENSMUSG00000103655.1, intron 2 of 3) -1768 ENSMUSG00000103170.1 ENSMUSG00000103170 ENSMUST00000194488 Gm37170 lincRNA Interval_42018 chr13 6575821 6576922 + 0 NA promoter-TSS (ENSMUSG00000021193.10) protein_coding-promoter-TSS (ENSMUSG00000021193.10) 9368 ENSMUSG00000021193.10 ENSMUSG00000021193 ENSMUST00000222061 Pitrm1 protein_coding Interval_133557 chr6 6794353 6794646 + 0 NA Intergenic Intergenic -26443 ENSMUSG00000098963.1 ENSMUSG00000098963 ENSMUST00000183553 Gm27699 misc_RNA Interval_4942 chr1 82850761 82851009 + 0 NA intron (ENSMUSG00000026159.13, intron 1 of 5) protein_coding-intron (ENSMUSG00000026159.13, intron 1 of 12) 11216 ENSMUSG00000026159.13 ENSMUSG00000026159 ENSMUST00000186043 Agfg1 protein_coding Interval_23775 chr11 26117845 26118129 + 0 NA intron (ENSMUSG00000032985.15, intron 1 of 1) protein_coding-intron (ENSMUSG00000032985.15, intron 1 of 6) -84253 ENSMUSG00000099015.1 ENSMUSG00000099015 ENSMUST00000185114 Mir6372 miRNA Interval_80884 chr18 49896558 49897065 + 0 NA intron (ENSMUSG00000037416.13, intron 2 of 10) protein_coding-intron (ENSMUSG00000037416.13, intron 25 of 42) -25902 ENSMUSG00000037416.13 ENSMUSG00000037416 ENSMUST00000181042 Dmxl1 protein_coding Interval_111313 chr4 18441372 18441668 + 0 NA intron (ENSMUSG00000087402.1, intron 1 of 10) processed_transcript-intron (ENSMUSG00000087402.1, intron 1 of 10) 30594 ENSMUSG00000080919.1 ENSMUSG00000080919 ENSMUST00000117839 Gm11854 processed_pseudogene Interval_23685 chr11 24575431 24575655 + 0 NA intron (ENSMUSG00000087085.1, intron 2 of 3) lincRNA-intron (ENSMUSG00000087085.1, intron 2 of 3) -21485 ENSMUSG00000088502.1 ENSMUSG00000088502 ENSMUST00000157877 Gm22787 snRNA Interval_117276 chr4 121208736 121209285 + 0 NA intron (ENSMUSG00000049878.13, intron 1 of 7) protein_coding-intron (ENSMUSG00000049878.13, intron 1 of 7) 6074 ENSMUSG00000049878.13 ENSMUSG00000049878 ENSMUST00000222814 Rlf protein_coding Interval_52241 chr14 40958208 40959373 + 0 NA intron (ENSMUSG00000037824.6, intron 1 of 8) protein_coding-intron (ENSMUSG00000037824.6, intron 1 of 8) -24474 ENSMUSG00000037824.6 ENSMUSG00000037824 ENSMUST00000224349 Tspan14 protein_coding Interval_49693 chr13 114033898 114035749 + 0 NA intron (ENSMUSG00000042348.10, intron 5 of 5) protein_coding-intron (ENSMUSG00000042348.10, intron 4 of 4) 85593 ENSMUSG00000114696.1 ENSMUSG00000114696 ENSMUST00000223997 Gm47479 TEC Interval_18137 chr10 82898967 82901757 + 0 NA Intergenic Intergenic 33736 ENSMUSG00000109864.1 ENSMUSG00000109864 ENSMUST00000211623 Eid3 protein_coding Interval_65536 chr16 23134838 23136040 + 0 NA Intergenic Intergenic -1119 ENSMUSG00000116540.1 ENSMUSG00000116540 ENSMUST00000232214 Gm49624 processed_pseudogene Interval_18028 chr10 81432851 81433309 + 0 NA intron (ENSMUSG00000055053.18, intron 1 of 9) protein_coding-intron (ENSMUSG00000055053.18, intron 1 of 9) -16783 ENSMUSG00000105379.1 ENSMUSG00000105379 ENSMUST00000199973 Mir1191b miRNA Interval_120874 chr4 151211746 151212955 + 0 NA intron (ENSMUSG00000014592.21, intron 6 of 24) protein_coding-intron (ENSMUSG00000014592.21, intron 6 of 23) 122780 ENSMUSG00000078491.2 ENSMUSG00000078491 ENSMUST00000105667 Gm13090 protein_coding Interval_32881 chr11 112772809 112773874 + 0 NA intron (ENSMUSG00000041674.16, intron 3 of 5) processed_transcript-intron (ENSMUSG00000041674.16, intron 3 of 5) -8883 ENSMUSG00000000567.5 ENSMUSG00000000567 ENSMUST00000000579 Sox9 protein_coding Interval_133793 chr6 12262606 12262839 + 0 NA Intergenic Intergenic 134096 ENSMUSG00000108209.1 ENSMUSG00000108209 ENSMUST00000203296 Gm32222 processed_pseudogene Interval_88919 chr2 12895966 12896153 + 0 NA Intergenic Intergenic -81880 ENSMUSG00000026730.12 ENSMUSG00000026730 ENSMUST00000195521 Pter protein_coding Interval_132342 chr5 144318245 144319373 + 0 NA intron (ENSMUSG00000047843.16, intron 3 of 3) protein_coding-intron (ENSMUSG00000038859.7, intron 3 of 13) -29902 ENSMUSG00000038859.7 ENSMUSG00000038859 ENSMUST00000129287 Baiap2l1 protein_coding Interval_102002 chr3 14816381 14817313 + 0 NA Intergenic Intergenic -8482 ENSMUSG00000027556.15 ENSMUSG00000027556 ENSMUST00000144327 Car1 protein_coding Interval_73428 chr17 37176579 37176934 + 0 NA TTS (ENSMUSG00000092270.1) processed_pseudogene-TTS (ENSMUSG00000092270.1) 902 ENSMUSG00000092270.1 ENSMUSG00000092270 ENSMUST00000173709 Gm7031 processed_pseudogene Interval_94461 chr2 91387746 91388614 + 0 NA intron (ENSMUSG00000040591.18, intron 1 of 7) protein_coding-intron (ENSMUSG00000040591.18, intron 2 of 8) 18956 ENSMUSG00000080507.2 ENSMUSG00000080507 ENSMUST00000116857 Gm22071 miRNA Interval_106054 chr3 92010489 92011564 + 0 NA promoter-TSS (ENSMUSG00000077085.1) miRNA-promoter-TSS (ENSMUSG00000077085.1) -161 ENSMUSG00000077085.1 ENSMUSG00000077085 ENSMUST00000103897 Gm23697 miRNA Interval_166832 chr9 63092180 63092441 + 0 NA Intergenic Intergenic -9337 ENSMUSG00000111144.1 ENSMUSG00000111144 ENSMUST00000214934 Gm48193 lincRNA Interval_118687 chr4 133198475 133198730 + 0 NA exon (ENSMUSG00000028868.13, exon 9 of 9) protein_coding-exon (ENSMUSG00000028868.13, exon 9 of 9) 2947 ENSMUSG00000099202.1 ENSMUSG00000099202 ENSMUST00000184894 Mir7017 miRNA Interval_34862 chr12 12796529 12796768 + 0 NA Intergenic Intergenic 8663 ENSMUSG00000091430.1 ENSMUSG00000091430 ENSMUST00000171380 Platr19 lincRNA Interval_18791 chr10 90828749 90830051 + 0 NA promoter-TSS (ENSMUSG00000058589.14) protein_coding-promoter-TSS (ENSMUSG00000058589.14) 16317 ENSMUSG00000112015.1 ENSMUSG00000112015 ENSMUST00000219938 Gm47592 TEC Interval_20906 chr10 121899492 121900313 + 0 NA intron (ENSMUSG00000020121.15, intron 3 of 3) protein_coding-intron (ENSMUSG00000020121.15, intron 3 of 21) -67844 ENSMUSG00000112596.1 ENSMUSG00000112596 ENSMUST00000218664 Gm48804 TEC Interval_108513 chr3 127842922 127843723 + 0 NA Intergenic Intergenic -5799 ENSMUSG00000074238.6 ENSMUSG00000074238 ENSMUST00000196392 Ap1ar protein_coding Interval_49195 chr13 109330863 109331244 + 0 NA intron (ENSMUSG00000021699.17, intron 1 of 14) protein_coding-intron (ENSMUSG00000021699.17, intron 1 of 14) 6309 ENSMUSG00000076946.2 ENSMUSG00000076946 ENSMUST00000103758 Mir582 miRNA Interval_111762 chr4 27924933 27925981 + 0 NA Intergenic Intergenic -57802 ENSMUSG00000082674.1 ENSMUSG00000082674 ENSMUST00000117094 Gm11914 processed_pseudogene Interval_55252 chr14 79676443 79677553 + 0 NA Intergenic Intergenic 25412 ENSMUSG00000115740.1 ENSMUSG00000115740 ENSMUST00000226962 Gm49042 lincRNA Interval_165116 chr9 44645833 44646957 + 0 NA Intergenic Intergenic -4526 ENSMUSG00000111060.1 ENSMUSG00000111060 ENSMUST00000214694 Gm47238 unprocessed_pseudogene Interval_148722 chr7 84642627 84642908 + 0 NA intron (ENSMUSG00000030629.15, intron 1 of 3) protein_coding-intron (ENSMUSG00000030629.15, intron 2 of 7) -36863 ENSMUSG00000030630.16 ENSMUSG00000030630 ENSMUST00000134390 Fah protein_coding Interval_49312 chr13 110625665 110626593 + 0 NA Intergenic Intergenic -1867 ENSMUSG00000109853.1 ENSMUSG00000109853 ENSMUST00000211420 Gm33045 lincRNA Interval_125470 chr5 67405075 67405642 + 0 NA intron (ENSMUSG00000092060.4, intron 3 of 4) protein_coding-intron (ENSMUSG00000092060.4, intron 3 of 4) 22259 ENSMUSG00000092060.4 ENSMUSG00000092060 ENSMUST00000201972 Bend4 protein_coding Interval_37448 chr12 69023684 69024309 + 0 NA Intergenic Intergenic -29026 ENSMUSG00000113320.1 ENSMUSG00000113320 ENSMUST00000221589 Gm47515 lincRNA Interval_123850 chr5 35947970 35949023 + 0 NA intron (ENSMUSG00000029094.12, intron 5 of 14) protein_coding-intron (ENSMUSG00000029094.12, intron 5 of 16) 30599 ENSMUSG00000082692.2 ENSMUSG00000082692 ENSMUST00000119066 H2af-ps processed_pseudogene Interval_60740 chr15 76457137 76458376 + 0 NA exon (ENSMUSG00000034161.8, exon 1 of 2) protein_coding-exon (ENSMUSG00000034161.8, exon 1 of 2) 304 ENSMUSG00000034161.8 ENSMUSG00000034161 ENSMUST00000043089 Scx protein_coding Interval_133628 chr6 7777515 7777819 + 0 NA TTS (ENSMUSG00000107394.1) lincRNA-TTS (ENSMUSG00000107394.1) 11273 ENSMUSG00000107394.1 ENSMUSG00000107394 ENSMUST00000203458 1700012J15Rik lincRNA Interval_47126 chr13 76027494 76027852 + 0 NA Intergenic Intergenic -7563 ENSMUSG00000114366.1 ENSMUSG00000114366 ENSMUST00000224650 Gm4165 processed_pseudogene Interval_148285 chr7 80301577 80302152 + 0 NA exon (ENSMUSG00000038943.16, exon 3 of 3) protein_coding-exon (ENSMUSG00000038943.16, exon 3 of 3) 7351 ENSMUSG00000038943.16 ENSMUSG00000038943 ENSMUST00000174599 Prc1 protein_coding Interval_152344 chr7 132104870 132106016 + 0 NA TTS (ENSMUSG00000030862.13) protein_coding-TTS (ENSMUSG00000030862.13) 46802 ENSMUSG00000084630.1 ENSMUSG00000084630 ENSMUST00000122681 n-R5s159 rRNA Interval_113249 chr4 52167337 52167568 + 0 NA Intergenic Intergenic -73451 ENSMUSG00000083539.1 ENSMUSG00000083539 ENSMUST00000121199 Gm12466 processed_pseudogene Interval_37150 chr12 59003691 59004570 + 0 NA intron (ENSMUSG00000020986.13, intron 2 of 17) protein_coding-intron (ENSMUSG00000020986.13, intron 4 of 19) -20536 ENSMUSG00000060121.15 ENSMUSG00000060121 ENSMUST00000182710 Gemin2 protein_coding Interval_94962 chr2 102199892 102201757 + 0 NA Intergenic Intergenic 9555 ENSMUSG00000081774.1 ENSMUSG00000081774 ENSMUST00000118901 Gm13866 processed_pseudogene Interval_42049 chr13 6883610 6885224 + 0 NA Intergenic Intergenic 41434 ENSMUSG00000113932.1 ENSMUSG00000113932 ENSMUST00000220700 2900024D18Rik TEC Interval_19212 chr10 95532454 95533537 + 0 NA intron (ENSMUSG00000074781.5, intron 1 of 2) protein_coding-intron (ENSMUSG00000074781.5, intron 1 of 3) 17341 ENSMUSG00000074781.5 ENSMUSG00000074781 ENSMUST00000217757 Ube2n protein_coding Interval_28634 chr11 77469223 77469504 + 0 NA intron (ENSMUSG00000020836.15, intron 9 of 9) protein_coding-intron (ENSMUSG00000020836.15, intron 9 of 9) 6718 ENSMUSG00000020836.15 ENSMUSG00000020836 ENSMUST00000079770 Coro6 protein_coding Interval_168858 chr9 88121658 88122064 + 0 NA intron (ENSMUSG00000099886.1, intron 1 of 1) processed_pseudogene-intron (ENSMUSG00000099886.1, intron 1 of 1) 904 ENSMUSG00000099886.1 ENSMUSG00000099886 ENSMUST00000187464 Gm2324 processed_pseudogene Interval_133846 chr6 13281657 13282012 + 0 NA Intergenic Intergenic 18089 ENSMUSG00000118525.1 ENSMUSG00000118525 ENSMUST00000238854 AC121573.1 processed_pseudogene Interval_2871 chr1 47006926 47007614 + 0 NA Intergenic Intergenic -60518 ENSMUSG00000101921.1 ENSMUSG00000101921 ENSMUST00000186233 Gm28825 processed_pseudogene Interval_133560 chr6 6850302 6850965 + 0 NA intron (ENSMUSG00000090063.6, intron 2 of 2) antisense-intron (ENSMUSG00000090063.6, intron 2 of 2) 5618 ENSMUSG00000107967.1 ENSMUSG00000107967 ENSMUST00000204703 Gm44094 TEC Interval_28788 chr11 78322613 78323499 + 0 NA promoter-TSS (ENSMUSG00000017390.15) protein_coding-promoter-TSS (ENSMUSG00000017390.15) -2273 ENSMUSG00000017390.15 ENSMUSG00000017390 ENSMUST00000156039 Aldoc protein_coding Interval_99512 chr2 162853838 162854243 + 0 NA Intergenic Intergenic 14154 ENSMUSG00000086030.1 ENSMUSG00000086030 ENSMUST00000128846 Gm14255 lincRNA Interval_124310 chr5 43821385 43822299 + 0 NA promoter-TSS (ENSMUSG00000039753.16) protein_coding-promoter-TSS (ENSMUSG00000039753.16) 2957 ENSMUSG00000029082.17 ENSMUSG00000029082 ENSMUST00000125838 Bst1 protein_coding Interval_57999 chr15 25928404 25929071 + 0 NA intron (ENSMUSG00000022270.16, intron 1 of 2) protein_coding-intron (ENSMUSG00000022270.16, intron 3 of 8) 18313 ENSMUSG00000022270.16 ENSMUSG00000022270 ENSMUST00000228306 Retreg1 protein_coding Interval_112825 chr4 45319973 45320855 + 0 NA promoter-TSS (ENSMUSG00000028322.11) protein_coding-promoter-TSS (ENSMUSG00000028322.11) 6316 ENSMUSG00000035601.9 ENSMUSG00000035601 ENSMUST00000145756 Trmt10b protein_coding Interval_90879 chr2 33171410 33172025 + 0 NA intron (ENSMUSG00000038831.16, intron 10 of 17) protein_coding-intron (ENSMUSG00000038831.16, intron 9 of 16) -6185 ENSMUSG00000085087.1 ENSMUSG00000085087 ENSMUST00000139288 Gm13528 antisense Interval_69351 chr16 92399647 92400692 + 0 NA promoter-TSS (ENSMUSG00000022951.16) protein_coding-promoter-TSS (ENSMUSG00000022951.16) -191 ENSMUSG00000022951.16 ENSMUSG00000022951 ENSMUST00000232457 Rcan1 protein_coding Interval_42030 chr13 6635747 6637235 + 0 NA intron (ENSMUSG00000021196.14, intron 1 of 15) protein_coding-intron (ENSMUSG00000021196.14, intron 1 of 21) 26403 ENSMUSG00000068324.5 ENSMUSG00000068324 ENSMUST00000089635 Gm10029 processed_pseudogene Interval_136739 chr6 58799645 58800710 + 0 NA Intergenic Intergenic -18240 ENSMUSG00000108164.1 ENSMUSG00000108164 ENSMUST00000203675 Gm43899 processed_pseudogene Interval_50599 chr14 16347451 16348618 + 0 NA intron (ENSMUSG00000114243.1, intron 1 of 1) antisense-intron (ENSMUSG00000114243.1, intron 1 of 1) 18234 ENSMUSG00000114243.1 ENSMUSG00000114243 ENSMUST00000225819 Gm48163 antisense Interval_97912 chr2 145636024 145637060 + 0 NA intron (ENSMUSG00000063873.10, intron 16 of 16) protein_coding-intron (ENSMUSG00000063873.10, intron 15 of 15) -38673 ENSMUSG00000001768.16 ENSMUSG00000001768 ENSMUST00000145874 Rin2 protein_coding Interval_58939 chr15 40242022 40242329 + 0 NA Intergenic Intergenic -56076 ENSMUSG00000092855.1 ENSMUSG00000092855 ENSMUST00000175114 Gm25958 miRNA Interval_867 chr1 12802994 12803213 + 0 NA intron (ENSMUSG00000016918.15, intron 5 of 11) protein_coding-intron (ENSMUSG00000016918.15, intron 5 of 21) 83639 ENSMUSG00000016918.15 ENSMUSG00000016918 ENSMUST00000185780 Sulf1 protein_coding Interval_903 chr1 13078385 13078748 + 0 NA TTS (ENSMUSG00000099498.1) lincRNA-TTS (ENSMUSG00000099498.1) 9728 ENSMUSG00000099498.1 ENSMUSG00000099498 ENSMUST00000187394 Gm29283 lincRNA Interval_17537 chr10 77590691 77591408 + 0 NA TTS (ENSMUSG00000009291.13) protein_coding-TTS (ENSMUSG00000009291.13) 9326 ENSMUSG00000009291.13 ENSMUSG00000009291 ENSMUST00000167006 Pttg1ip protein_coding Interval_111902 chr4 32381210 32382181 + 0 NA intron (ENSMUSG00000040270.16, intron 2 of 3) protein_coding-intron (ENSMUSG00000040270.16, intron 2 of 7) -35740 ENSMUSG00000040270.16 ENSMUSG00000040270 ENSMUST00000125263 Bach2 protein_coding Interval_102852 chr3 32291906 32292244 + 0 NA Intergenic Intergenic 31742 ENSMUSG00000103643.1 ENSMUSG00000103643 ENSMUST00000192855 Gm37770 processed_pseudogene Interval_110085 chr3 153148943 153149130 + 0 NA Intergenic Intergenic 33779 ENSMUSG00000105337.4 ENSMUSG00000105337 ENSMUST00000197695 1700094M23Rik lincRNA Interval_159954 chr8 105384259 105384964 + 0 NA intron (ENSMUSG00000051648.13, intron 15 of 15) protein_coding-intron (ENSMUSG00000051648.13, intron 16 of 16) 10792 ENSMUSG00000014782.16 ENSMUSG00000014782 ENSMUST00000161672 Plekhg4 protein_coding Interval_92541 chr2 60434955 60436383 + 0 NA intron (ENSMUSG00000054580.14, intron 20 of 29) protein_coding-intron (ENSMUSG00000054580.14, intron 20 of 29) 24144 ENSMUSG00000087283.1 ENSMUSG00000087283 ENSMUST00000131457 Gm13580 antisense Interval_79484 chr18 32267037 32267248 + 0 NA intron (ENSMUSG00000024382.13, intron 3 of 3) protein_coding-intron (ENSMUSG00000024382.13, intron 13 of 14) -26208 ENSMUSG00000089529.1 ENSMUSG00000089529 ENSMUST00000158904 Gm22325 misc_RNA Interval_104889 chr3 78358335 78358936 + 0 NA Intergenic Intergenic 47303 ENSMUSG00000104782.1 ENSMUSG00000104782 ENSMUST00000198459 Gm43326 TEC Interval_42572 chr13 15623606 15624953 + 0 NA intron (ENSMUSG00000021318.15, intron 2 of 2) protein_coding-intron (ENSMUSG00000021318.15, intron 4 of 14) -25656 ENSMUSG00000113191.1 ENSMUSG00000113191 ENSMUST00000220835 Gm48343 processed_pseudogene Interval_36668 chr12 51877264 51877970 + 0 NA intron (ENSMUSG00000035181.6, intron 24 of 24) protein_coding-intron (ENSMUSG00000035181.6, intron 35 of 35) -36996 ENSMUSG00000112746.1 ENSMUSG00000112746 ENSMUST00000218295 Gm19309 processed_pseudogene Interval_17170 chr10 73564494 73565037 + 0 NA intron (ENSMUSG00000052613.16, intron 2 of 2) protein_coding-intron (ENSMUSG00000052613.16, intron 2 of 13) 74791 ENSMUSG00000085176.1 ENSMUSG00000085176 ENSMUST00000145790 Gm15397 sense_intronic Interval_55385 chr14 86382712 86384216 + 0 NA Intergenic Intergenic -25058 ENSMUSG00000087812.1 ENSMUSG00000087812 ENSMUST00000157187 Gm25115 snRNA Interval_25396 chr11 47377173 47378043 + 0 NA intron (ENSMUSG00000020354.15, intron 2 of 2) protein_coding-intron (ENSMUSG00000020354.15, intron 1 of 7) -163824 ENSMUSG00000082792.1 ENSMUSG00000082792 ENSMUST00000121420 Gm12176 processed_pseudogene Interval_39746 chr12 96578430 96579044 + 0 NA Intergenic Intergenic -83577 ENSMUSG00000112040.1 ENSMUSG00000112040 ENSMUST00000218365 Gm47396 lincRNA Interval_152189 chr7 130533389 130534452 + 0 NA intron (ENSMUSG00000040331.16, intron 1 of 2) protein_coding-intron (ENSMUSG00000030849.18, intron 2 of 6) 5288 ENSMUSG00000040331.16 ENSMUSG00000040331 ENSMUST00000161414 Nsmce4a protein_coding Interval_114290 chr4 70946048 70946229 + 0 NA Intergenic Intergenic -126535 ENSMUSG00000083549.1 ENSMUSG00000083549 ENSMUST00000119774 Gm11227 processed_pseudogene Interval_170429 chr9 107906548 107907259 + 0 NA promoter-TSS (ENSMUSG00000032584.12) protein_coding-promoter-TSS (ENSMUSG00000032584.12) -4 ENSMUSG00000032584.12 ENSMUSG00000032584 ENSMUST00000194527 Mst1r protein_coding Interval_66332 chr16 33201757 33202038 + 0 NA intron (ENSMUSG00000022807.9, intron 2 of 12) protein_coding-intron (ENSMUSG00000022807.9, intron 2 of 12) 16826 ENSMUSG00000022807.9 ENSMUSG00000022807 ENSMUST00000231617 Osbpl11 protein_coding Interval_91559 chr2 43329483 43329664 + 0 NA Intergenic Intergenic 189825 ENSMUSG00000080994.2 ENSMUSG00000080994 ENSMUST00000119418 Gm13464 processed_pseudogene Interval_28096 chr11 72777804 72778155 + 0 NA TTS (ENSMUSG00000057778.14) protein_coding-TTS (ENSMUSG00000057778.14) 17862 ENSMUSG00000057778.14 ENSMUSG00000057778 ENSMUST00000169476 Cyb5d2 protein_coding Interval_151778 chr7 126601380 126601736 + 0 NA Intergenic Intergenic -6617 ENSMUSG00000044701.5 ENSMUSG00000044701 ENSMUST00000058429 Il27 protein_coding Interval_96119 chr2 119884664 119884986 + 0 NA Intergenic Intergenic -6422 ENSMUSG00000081056.1 ENSMUSG00000081056 ENSMUST00000120952 Gm13998 processed_pseudogene Interval_36625 chr12 51614695 51616151 + 0 NA intron (ENSMUSG00000020954.16, intron 14 of 15) protein_coding-intron (ENSMUSG00000020954.16, intron 16 of 17) 22044 ENSMUSG00000020953.17 ENSMUSG00000020953 ENSMUST00000220173 Coch protein_coding Interval_14756 chr10 39618172 39618740 + 0 NA intron (ENSMUSG00000019842.6, intron 1 of 8) protein_coding-intron (ENSMUSG00000019842.6, intron 1 of 8) -4774 ENSMUSG00000086915.7 ENSMUSG00000086915 ENSMUST00000143877 Gm16364 antisense Interval_111501 chr4 22235543 22235844 + 0 NA Intergenic Intergenic -40140 ENSMUSG00000083376.1 ENSMUSG00000083376 ENSMUST00000121463 Gm11882 processed_pseudogene Interval_60255 chr15 70338105 70338655 + 0 NA Intergenic Intergenic -273711 ENSMUSG00000116398.1 ENSMUSG00000116398 ENSMUST00000231025 Gm5216 processed_pseudogene Interval_115000 chr4 88328140 88328350 + 0 NA intron (ENSMUSG00000038368.16, intron 20 of 41) protein_coding-intron (ENSMUSG00000038368.16, intron 22 of 43) -72105 ENSMUSG00000038368.16 ENSMUSG00000038368 ENSMUST00000107147 Focad protein_coding Interval_121716 chr5 5677264 5678283 + 0 NA promoter-TSS (ENSMUSG00000015653.13) protein_coding-promoter-TSS (ENSMUSG00000015653.13) 5290 ENSMUSG00000015653.13 ENSMUSG00000015653 ENSMUST00000150238 Steap2 protein_coding Interval_11054 chr1 178958624 178960720 + 0 NA intron (ENSMUSG00000055067.15, intron 7 of 7) protein_coding-intron (ENSMUSG00000055067.15, intron 8 of 8) -42058 ENSMUSG00000089713.1 ENSMUSG00000089713 ENSMUST00000162545 Gm16564 antisense Interval_76412 chr17 80009791 80010523 + 0 NA Intergenic Intergenic -23357 ENSMUSG00000088183.1 ENSMUSG00000088183 ENSMUST00000157558 Gm22215 snRNA Interval_78560 chr18 14710971 14711309 + 0 NA intron (ENSMUSG00000036743.4, intron 1 of 6) protein_coding-intron (ENSMUSG00000036743.4, intron 1 of 6) -15406 ENSMUSG00000036743.4 ENSMUSG00000036743 ENSMUST00000235037 Psma8 protein_coding Interval_23359 chr11 21864103 21864523 + 0 NA intron (ENSMUSG00000020319.9, intron 15 of 17) protein_coding-intron (ENSMUSG00000020319.9, intron 15 of 17) 13637 ENSMUSG00000084004.1 ENSMUSG00000084004 ENSMUST00000117561 Gm12047 processed_pseudogene Interval_41877 chr13 3837479 3839032 + 0 NA exon (ENSMUSG00000033765.5, exon 1 of 1) protein_coding-exon (ENSMUSG00000033765.5, exon 1 of 1) 498 ENSMUSG00000033765.5 ENSMUSG00000033765 ENSMUST00000042219 Calm4 protein_coding Interval_54298 chr14 67272146 67272679 + 0 NA intron (ENSMUSG00000022053.13, intron 7 of 16) protein_coding-intron (ENSMUSG00000022053.13, intron 7 of 16) 2551 ENSMUSG00000080432.1 ENSMUSG00000080432 ENSMUST00000116782 Gm23178 miRNA Interval_159884 chr8 104630542 104631818 + 0 NA promoter-TSS (ENSMUSG00000031880.7) protein_coding-promoter-TSS (ENSMUSG00000031880.7) 60 ENSMUSG00000031880.7 ENSMUSG00000031880 ENSMUST00000212163 Rrad protein_coding Interval_145204 chr7 30625695 30627432 + 0 NA promoter-TSS (ENSMUSG00000036751.7) protein_coding-promoter-TSS (ENSMUSG00000036751.7) -449 ENSMUSG00000036751.7 ENSMUSG00000036751 ENSMUST00000207851 Cox6b1 protein_coding Interval_11129 chr1 179545897 179546964 + 0 NA promoter-TSS (ENSMUSG00000026492.11) protein_coding-promoter-TSS (ENSMUSG00000026492.11) -79 ENSMUSG00000038949.8 ENSMUSG00000038949 ENSMUST00000143270 Cnst protein_coding Interval_58758 chr15 37814655 37815067 + 0 NA Intergenic Intergenic -49460 ENSMUSG00000086313.1 ENSMUSG00000086313 ENSMUST00000156011 Gm15940 sense_intronic Interval_17004 chr10 70378416 70378790 + 0 NA Intergenic Intergenic 36978 ENSMUSG00000112884.1 ENSMUSG00000112884 ENSMUST00000219437 Gm47946 lincRNA Interval_106166 chr3 94268176 94269024 + 0 NA Intergenic Intergenic 4564 ENSMUSG00000089696.3 ENSMUSG00000089696 ENSMUST00000098878 Spopfm1 protein_coding Interval_156342 chr8 47555758 47557192 + 0 NA Intergenic Intergenic -1054 ENSMUSG00000110363.1 ENSMUSG00000110363 ENSMUST00000210981 Gm45576 lincRNA Interval_127984 chr5 110085290 110087163 + 0 NA intron (ENSMUSG00000109771.1, intron 1 of 3) protein_coding-intron (ENSMUSG00000109771.1, intron 1 of 3) 8175 ENSMUSG00000109771.1 ENSMUSG00000109771 ENSMUST00000211397 Gm35315 protein_coding Interval_54907 chr14 76150012 76150339 + 0 NA Intergenic Intergenic 39284 ENSMUSG00000022009.1 ENSMUSG00000022009 ENSMUST00000022586 Nufip1 protein_coding Interval_56116 chr14 105896556 105899315 + 0 NA Intergenic Intergenic -1116 ENSMUSG00000022114.5 ENSMUSG00000022114 ENSMUST00000022709 Spry2 protein_coding Interval_50084 chr14 7867828 7868122 + 0 NA intron (ENSMUSG00000025278.9, intron 2 of 45) protein_coding-intron (ENSMUSG00000025278.9, intron 2 of 45) -16766 ENSMUSG00000025278.9 ENSMUSG00000025278 ENSMUST00000228206 Flnb protein_coding Interval_149480 chr7 98961988 98963934 + 0 NA intron (ENSMUSG00000035354.9, intron 7 of 10) protein_coding-intron (ENSMUSG00000035354.9, intron 12 of 14) 27067 ENSMUSG00000089501.1 ENSMUSG00000089501 ENSMUST00000158876 Gm23479 snoRNA Interval_67404 chr16 48346173 48346414 + 0 NA Intergenic Intergenic -22349 ENSMUSG00000116889.1 ENSMUSG00000116889 ENSMUST00000231810 Gm49771 processed_pseudogene Interval_137402 chr6 71936307 71936639 + 0 NA exon (ENSMUSG00000049553.11, exon 13 of 34) protein_coding-exon (ENSMUSG00000049553.11, exon 13 of 34) -11888 ENSMUSG00000049553.11 ENSMUSG00000049553 ENSMUST00000205517 Polr1a protein_coding Interval_159986 chr8 105598834 105599255 + 0 NA intron (ENSMUSG00000005705.10, intron 1 of 5) protein_coding-intron (ENSMUSG00000005705.10, intron 1 of 5) -6211 ENSMUSG00000038604.9 ENSMUSG00000038604 ENSMUST00000043531 Ripor1 protein_coding Interval_37048 chr12 56959810 56960118 + 0 NA intron (ENSMUSG00000035472.14, intron 1 of 9) protein_coding-intron (ENSMUSG00000035472.14, intron 1 of 9) 200679 ENSMUSG00000035472.14 ENSMUSG00000035472 ENSMUST00000160892 Slc25a21 protein_coding Interval_56860 chr14 122483877 122485414 + 0 NA Intergenic Intergenic -5941 ENSMUSG00000075465.2 ENSMUSG00000075465 ENSMUST00000100294 Gm10837 lincRNA Interval_121734 chr5 5998421 5999582 + 0 NA Intergenic Intergenic 16023 ENSMUSG00000088692.1 ENSMUSG00000088692 ENSMUST00000158067 Gm23838 snRNA Interval_9712 chr1 161214109 161215478 + 0 NA intron (ENSMUSG00000102817.2, intron 17 of 25) transcribed_unprocessed_pseudogene-intron (ENSMUSG00000102817.2, intron 17 of 25) 13984 ENSMUSG00000102817.2 ENSMUSG00000102817 ENSMUST00000212885 Gm6185 transcribed_unprocessed_pseudogene Interval_111581 chr4 23913620 23914669 + 0 NA Intergenic Intergenic 19810 ENSMUSG00000100395.1 ENSMUSG00000100395 ENSMUST00000188547 Gm28448 lincRNA Interval_104367 chr3 64235085 64236367 + 0 NA Intergenic Intergenic -22049 ENSMUSG00000093416.1 ENSMUSG00000093416 ENSMUST00000176980 Gm18294 unprocessed_pseudogene Interval_113879 chr4 59531321 59531611 + 0 NA intron (ENSMUSG00000028382.15, intron 1 of 12) protein_coding-intron (ENSMUSG00000028382.15, intron 1 of 13) -1281 ENSMUSG00000080831.1 ENSMUSG00000080831 ENSMUST00000119529 Gm12529 processed_pseudogene Interval_92118 chr2 53412184 53412414 + 0 NA Intergenic Intergenic -13812 ENSMUSG00000082472.1 ENSMUSG00000082472 ENSMUST00000118477 Gm13501 processed_pseudogene Interval_16360 chr10 62474981 62477612 + 0 NA intron (ENSMUSG00000020078.16, intron 1 of 3) protein_coding-intron (ENSMUSG00000020078.16, intron 2 of 8) 10436 ENSMUSG00000020078.16 ENSMUSG00000020078 ENSMUST00000217868 Vps26a protein_coding Interval_46409 chr13 64903761 64904531 + 0 NA promoter-TSS (ENSMUSG00000033063.8) protein_coding-promoter-TSS (ENSMUSG00000033063.8) -9826 ENSMUSG00000114179.1 ENSMUSG00000114179 ENSMUST00000221990 Eif1-ps2 processed_pseudogene Interval_28112 chr11 72924732 72926792 + 0 NA TTS (ENSMUSG00000055670.14) protein_coding-TTS (ENSMUSG00000055670.14) -27345 ENSMUSG00000105756.1 ENSMUSG00000105756 ENSMUST00000198722 Gm44467 miRNA Interval_67410 chr16 48407145 48407409 + 0 NA intron (ENSMUSG00000110573.1, intron 2 of 3) protein_coding-intron (ENSMUSG00000110573.1, intron 2 of 3) 3147 ENSMUSG00000064932.1 ENSMUSG00000064932 ENSMUST00000082998 n-R5s36 rRNA Interval_142533 chr6 143116605 143117194 + 0 NA intron (ENSMUSG00000108094.1, intron 7 of 8) lincRNA-intron (ENSMUSG00000108094.1, intron 7 of 8) 8159 ENSMUSG00000107693.1 ENSMUSG00000107693 ENSMUST00000203536 Gm44312 processed_pseudogene Interval_83837 chr19 5009881 5010305 + 0 NA TTS (ENSMUSG00000117723.1) processed_pseudogene-TTS (ENSMUSG00000117723.1) 708 ENSMUSG00000117723.1 ENSMUSG00000117723 ENSMUST00000235939 Gm50382 processed_pseudogene Interval_111488 chr4 22095153 22096634 + 0 NA Intergenic Intergenic 21639 ENSMUSG00000082490.1 ENSMUSG00000082490 ENSMUST00000117612 Gm11880 processed_pseudogene Interval_143829 chr7 16581337 16582099 + 0 NA intron (ENSMUSG00000058230.12, intron 2 of 7) protein_coding-intron (ENSMUSG00000058230.12, intron 1 of 6) -32106 ENSMUSG00000100583.6 ENSMUSG00000100583 ENSMUST00000186708 Gm29443 antisense Interval_88673 chr2 9535004 9536066 + 0 NA Intergenic Intergenic -40301 ENSMUSG00000081202.1 ENSMUSG00000081202 ENSMUST00000121535 Gm13220 processed_pseudogene Interval_94642 chr2 92947793 92949070 + 0 NA intron (ENSMUSG00000027220.2, intron 4 of 5) protein_coding-intron (ENSMUSG00000027220.2, intron 4 of 5) 33333 ENSMUSG00000027220.2 ENSMUSG00000027220 ENSMUST00000028648 Syt13 protein_coding Interval_61007 chr15 78730676 78731603 + 0 NA Intergenic Intergenic 36025 ENSMUSG00000018169.12 ENSMUSG00000018169 ENSMUST00000128389 Mfng protein_coding Interval_46526 chr13 66827349 66828178 + 0 NA Intergenic Intergenic -12544 ENSMUSG00000117784.1 ENSMUSG00000117784 ENSMUST00000222552 Vmn2r-ps108 unprocessed_pseudogene Interval_137627 chr6 76477315 76477885 + 0 NA Intergenic Intergenic -18482 ENSMUSG00000107651.1 ENSMUSG00000107651 ENSMUST00000204070 Gm44166 antisense Interval_165228 chr9 45524534 45524843 + 0 NA intron (ENSMUSG00000032087.11, intron 3 of 32) protein_coding-intron (ENSMUSG00000032087.11, intron 3 of 32) -92958 ENSMUSG00000097074.2 ENSMUSG00000097074 ENSMUST00000215652 4833428L15Rik antisense Interval_84425 chr19 10818456 10819066 + 0 NA intron (ENSMUSG00000024670.17, intron 1 of 5) protein_coding-intron (ENSMUSG00000024670.17, intron 1 of 11) 11165 ENSMUSG00000024670.17 ENSMUSG00000024670 ENSMUST00000236355 Cd6 protein_coding Interval_113966 chr4 62023407 62025032 + 0 NA Intergenic Intergenic 7443 ENSMUSG00000083524.1 ENSMUSG00000083524 ENSMUST00000119998 Mup-ps21 unprocessed_pseudogene Interval_146848 chr7 53248989 53249574 + 0 NA Intergenic Intergenic 322211 ENSMUSG00000070203.1 ENSMUSG00000070203 ENSMUST00000093693 Gm22444 snRNA Interval_55085 chr14 77848009 77849291 + 0 NA intron (ENSMUSG00000022013.4, intron 3 of 5) protein_coding-intron (ENSMUSG00000022013.4, intron 2 of 4) -8441 ENSMUSG00000022013.4 ENSMUSG00000022013 ENSMUST00000022590 Dnajc15 protein_coding Interval_19277 chr10 95976303 95977203 + 0 NA intron (ENSMUSG00000036499.9, intron 2 of 17) protein_coding-intron (ENSMUSG00000036499.9, intron 2 of 28) 36103 ENSMUSG00000036499.9 ENSMUSG00000036499 ENSMUST00000218517 Eea1 protein_coding Interval_79932 chr18 36030710 36032277 + 0 NA intron (ENSMUSG00000060275.14, intron 3 of 4) protein_coding-intron (ENSMUSG00000060275.14, intron 7 of 7) 37132 ENSMUSG00000060275.14 ENSMUSG00000060275 ENSMUST00000115705 Nrg2 protein_coding Interval_40049 chr12 100858264 100858663 + 0 NA intron (ENSMUSG00000021185.16, intron 3 of 4) protein_coding-intron (ENSMUSG00000021185.16, intron 10 of 12) -4323 ENSMUSG00000113159.1 ENSMUSG00000113159 ENSMUST00000221802 Gm48771 TEC Interval_146882 chr7 54702980 54703175 + 0 NA Intergenic Intergenic -91879 ENSMUSG00000109050.1 ENSMUSG00000109050 ENSMUST00000207666 Gm6290 processed_pseudogene Interval_55785 chr14 100105668 100106290 + 0 NA intron (ENSMUSG00000072294.5, intron 3 of 7) protein_coding-intron (ENSMUSG00000072294.5, intron 2 of 6) -107210 ENSMUSG00000054391.12 ENSMUSG00000054391 ENSMUST00000145018 4930517O19Rik antisense Interval_136428 chr6 54379545 54379978 + 0 NA intron (ENSMUSG00000073067.10, intron 3 of 13) processed_transcript-intron (ENSMUSG00000073067.10, intron 3 of 13) -52420 ENSMUSG00000073067.10 ENSMUSG00000073067 ENSMUST00000135612 9130019P16Rik processed_transcript Interval_143062 chr6 149002917 149003347 + 0 NA promoter-TSS (ENSMUSG00000082633.1) processed_pseudogene-promoter-TSS (ENSMUSG00000082633.1) -783 ENSMUSG00000082633.1 ENSMUSG00000082633 ENSMUST00000117470 Gm15779 processed_pseudogene Interval_132709 chr5 147314884 147315878 + 0 NA exon (ENSMUSG00000075543.4, exon 2 of 2) protein_coding-exon (ENSMUSG00000075543.4, exon 2 of 2) 7059 ENSMUSG00000075543.4 ENSMUSG00000075543 ENSMUST00000100433 Urad protein_coding Interval_93083 chr2 69990636 69991065 + 0 NA intron (ENSMUSG00000044308.17, intron 1 of 5) protein_coding-intron (ENSMUSG00000044308.17, intron 27 of 38) 2064 ENSMUSG00000044308.17 ENSMUSG00000044308 ENSMUST00000123890 Ubr3 protein_coding Interval_110819 chr4 8722847 8723425 + 0 NA intron (ENSMUSG00000041235.12, intron 1 of 1) protein_coding-intron (ENSMUSG00000041235.12, intron 1 of 37) -49554 ENSMUSG00000082122.1 ENSMUSG00000082122 ENSMUST00000120923 Gm11809 processed_pseudogene Interval_135177 chr6 37276970 37277488 + 0 NA intron (ENSMUSG00000038665.15, intron 1 of 1) protein_coding-intron (ENSMUSG00000038665.15, intron 2 of 32) 22955 ENSMUSG00000038665.15 ENSMUSG00000038665 ENSMUST00000136457 Dgki protein_coding Interval_56503 chr14 119272696 119273593 + 0 NA intron (ENSMUSG00000053465.6, intron 1 of 1) protein_coding-intron (ENSMUSG00000053465.6, intron 1 of 1) -5280 ENSMUSG00000115684.1 ENSMUSG00000115684 ENSMUST00000227446 Gm6087 processed_pseudogene Interval_155849 chr8 40191946 40192589 + 0 NA Intergenic Intergenic 115662 ENSMUSG00000098431.1 ENSMUSG00000098431 ENSMUST00000183849 Mir7666 miRNA Interval_2385 chr1 38869247 38869691 + 0 NA TTS (ENSMUSG00000026080.13) protein_coding-TTS (ENSMUSG00000026080.13) -15285 ENSMUSG00000103647.1 ENSMUSG00000103647 ENSMUST00000195309 Gm37707 antisense Interval_5043 chr1 84622676 84623866 + 0 NA intron (ENSMUSG00000036766.12, intron 1 of 4) protein_coding-intron (ENSMUSG00000036766.12, intron 1 of 12) 570 ENSMUSG00000036766.12 ENSMUSG00000036766 ENSMUST00000191546 Dner protein_coding Interval_4851 chr1 80239496 80240482 + 0 NA Intergenic Intergenic 14945 ENSMUSG00000101257.1 ENSMUSG00000101257 ENSMUST00000191452 2310015K22Rik lincRNA Interval_150105 chr7 106582488 106583126 + 0 NA Intergenic Intergenic 21228 ENSMUSG00000073902.5 ENSMUSG00000073902 ENSMUST00000184540 Gm1966 unprocessed_pseudogene Interval_63039 chr15 98776376 98778683 + 0 NA promoter-TSS (ENSMUSG00000022996.15) protein_coding-promoter-TSS (ENSMUSG00000022996.15) -500 ENSMUSG00000022996.15 ENSMUSG00000022996 ENSMUST00000226846 Wnt10b protein_coding Interval_121712 chr5 5612104 5612705 + 0 NA intron (ENSMUSG00000040473.15, intron 5 of 14) protein_coding-intron (ENSMUSG00000040473.15, intron 13 of 22) 9775 ENSMUSG00000040473.15 ENSMUSG00000040473 ENSMUST00000148193 Cfap69 protein_coding Interval_40281 chr12 103116945 103117647 + 0 NA intron (ENSMUSG00000021198.16, intron 32 of 51) protein_coding-intron (ENSMUSG00000021198.16, intron 27 of 46) -10893 ENSMUSG00000098628.1 ENSMUSG00000098628 ENSMUST00000183635 Gm27976 misc_RNA Interval_12942 chr10 8517701 8519401 + 0 NA exon (ENSMUSG00000047712.8, exon 1 of 8) protein_coding-exon (ENSMUSG00000047712.8, exon 1 of 8) -124383 ENSMUSG00000077582.1 ENSMUSG00000077582 ENSMUST00000104394 Gm24374 snRNA Interval_170306 chr9 106821565 106822837 + 0 NA intron (ENSMUSG00000040325.16, intron 1 of 22) protein_coding-intron (ENSMUSG00000040325.16, intron 1 of 22) -9603 ENSMUSG00000088812.1 ENSMUSG00000088812 ENSMUST00000158187 Gm22384 snRNA Interval_54897 chr14 76096103 76096404 + 0 NA intron (ENSMUSG00000022008.4, intron 6 of 7) protein_coding-intron (ENSMUSG00000022008.4, intron 6 of 7) 14507 ENSMUSG00000022008.4 ENSMUSG00000022008 ENSMUST00000022585 Gpalpp1 protein_coding Interval_77142 chr17 86832237 86833237 + 0 NA exon (ENSMUSG00000024140.10, exon 16 of 16) protein_coding-exon (ENSMUSG00000024140.10, exon 16 of 16) -7293 ENSMUSG00000099798.1 ENSMUSG00000099798 ENSMUST00000189953 Gm29168 lincRNA Interval_23930 chr11 28452366 28452600 + 0 NA intron (ENSMUSG00000032878.16, intron 2 of 5) protein_coding-intron (ENSMUSG00000032878.16, intron 2 of 3) -18373 ENSMUSG00000032878.16 ENSMUSG00000032878 ENSMUST00000109501 Ccdc85a protein_coding Interval_115167 chr4 92888746 92889263 + 0 NA Intergenic Intergenic -22422 ENSMUSG00000088914.1 ENSMUSG00000088914 ENSMUST00000158289 Gm22605 snRNA Interval_143978 chr7 18738963 18740298 + 0 NA promoter-TSS (ENSMUSG00000108835.1) unprocessed_pseudogene-promoter-TSS (ENSMUSG00000108835.1) -918 ENSMUSG00000108835.1 ENSMUSG00000108835 ENSMUST00000207638 Gm44566 unprocessed_pseudogene Interval_157072 chr8 64960634 64960853 + 0 NA intron (ENSMUSG00000025521.15, intron 3 of 4) protein_coding-intron (ENSMUSG00000025521.15, intron 3 of 5) 1200 ENSMUSG00000025521.15 ENSMUSG00000025521 ENSMUST00000211405 Tmem192 protein_coding Interval_142438 chr6 142307720 142307907 + 0 NA intron (ENSMUSG00000063975.13, intron 1 of 6) protein_coding-intron (ENSMUSG00000063975.13, intron 1 of 14) 9366 ENSMUSG00000041681.2 ENSMUSG00000041681 ENSMUST00000141583 Iapp protein_coding Interval_26069 chr11 53899853 53901245 + 0 NA Intergenic Intergenic -1641 ENSMUSG00000082271.1 ENSMUSG00000082271 ENSMUST00000118858 Gm12217 processed_pseudogene Interval_24952 chr11 41884773 41886263 + 0 NA intron (ENSMUSG00000087306.7, intron 1 of 5) processed_transcript-intron (ENSMUSG00000087306.7, intron 1 of 5) 31105 ENSMUSG00000020436.17 ENSMUSG00000020436 ENSMUST00000109290 Gabrg2 protein_coding Interval_164646 chr9 40296954 40297838 + 0 NA TTS (ENSMUSG00000040111.17) protein_coding-TTS (ENSMUSG00000040111.17) 14943 ENSMUSG00000049281.16 ENSMUSG00000049281 ENSMUST00000216398 Scn3b protein_coding Interval_137284 chr6 71046388 71046604 + 0 NA Intergenic Intergenic -6763 ENSMUSG00000077369.1 ENSMUSG00000077369 ENSMUST00000104181 Gm23485 snRNA Interval_107044 chr3 103126811 103128761 + 0 NA intron (ENSMUSG00000007379.15, intron 1 of 18) protein_coding-intron (ENSMUSG00000007379.15, intron 1 of 11) -21378 ENSMUSG00000007379.15 ENSMUSG00000007379 ENSMUST00000174486 Dennd2c protein_coding Interval_116631 chr4 116173274 116173500 + 0 NA promoter-TSS (ENSMUSG00000078593.2) protein_coding-promoter-TSS (ENSMUSG00000078593.2) 3 ENSMUSG00000111410.1 ENSMUSG00000111410 ENSMUST00000216692 Gm49337 protein_coding Interval_29751 chr11 86571185 86571634 + 0 NA Intergenic Intergenic 12749 ENSMUSG00000065455.1 ENSMUSG00000065455 ENSMUST00000083521 Mir21a miRNA Interval_69880 chr16 97845124 97845552 + 0 NA intron (ENSMUSG00000014039.18, intron 1 of 23) protein_coding-intron (ENSMUSG00000014039.18, intron 1 of 23) 31953 ENSMUSG00000105138.1 ENSMUSG00000105138 ENSMUST00000200252 Mir6964 miRNA Interval_14767 chr10 39689349 39689727 + 0 NA intron (ENSMUSG00000087177.7, intron 1 of 1) antisense-intron (ENSMUSG00000087177.7, intron 1 of 3) 27449 ENSMUSG00000111847.1 ENSMUSG00000111847 ENSMUST00000214635 Gm8899 processed_pseudogene Interval_64234 chr16 9430347 9431367 + 0 NA Intergenic Intergenic 272087 ENSMUSG00000116123.1 ENSMUSG00000116123 ENSMUST00000229655 Gm49451 lincRNA Interval_13751 chr10 21813267 21813486 + 0 NA Intergenic Intergenic 31475 ENSMUSG00000097107.1 ENSMUSG00000097107 ENSMUST00000180731 Platr6 lincRNA Interval_7472 chr1 131679371 131681057 + 0 NA Intergenic Intergenic -8524 ENSMUSG00000052688.12 ENSMUSG00000052688 ENSMUST00000130848 Rab7b protein_coding Interval_71676 chr17 25333345 25334428 + 0 NA Intergenic Intergenic 3194 ENSMUSG00000117517.1 ENSMUSG00000117517 ENSMUST00000234123 Gm50085 unprocessed_pseudogene Interval_157720 chr8 72517381 72518401 + 0 NA intron (ENSMUSG00000045248.6, intron 1 of 2) protein_coding-intron (ENSMUSG00000045248.6, intron 1 of 2) 2533 ENSMUSG00000110446.1 ENSMUSG00000110446 ENSMUST00000212240 Gm18646 processed_pseudogene Interval_169160 chr9 94700421 94700674 + 0 NA intron (ENSMUSG00000089709.1, intron 1 of 1) protein_coding-intron (ENSMUSG00000031129.9, intron 2 of 15) 1772 ENSMUSG00000089709.1 ENSMUSG00000089709 ENSMUST00000162306 Gm16262 antisense Interval_83868 chr19 5195433 5196369 + 0 NA intron (ENSMUSG00000024855.10, intron 2 of 4) protein_coding-intron (ENSMUSG00000024855.10, intron 1 of 23) 5402 ENSMUSG00000098803.1 ENSMUSG00000098803 ENSMUST00000183577 Gm27468 miRNA Interval_97032 chr2 130663925 130664876 + 0 NA promoter-TSS (ENSMUSG00000068290.11) protein_coding-promoter-TSS (ENSMUSG00000068290.11) -3405 ENSMUSG00000074797.11 ENSMUSG00000074797 ENSMUST00000126714 Itpa protein_coding Interval_171264 chr9 115788668 115789989 + 0 NA Intergenic Intergenic 108585 ENSMUSG00000110905.1 ENSMUSG00000110905 ENSMUST00000215982 Gm48007 lincRNA Interval_9159 chr1 154180541 154181273 + 0 NA Intergenic Intergenic -20280 ENSMUSG00000066797.6 ENSMUSG00000066797 ENSMUST00000086195 Zfp648 protein_coding Interval_137687 chr6 79387709 79389020 + 0 NA Intergenic Intergenic -152844 ENSMUSG00000107618.1 ENSMUSG00000107618 ENSMUST00000204707 Gm6261 processed_pseudogene Interval_122193 chr5 19291062 19291298 + 0 NA intron (ENSMUSG00000040003.18, intron 1 of 2) protein_coding-intron (ENSMUSG00000040003.18, intron 1 of 22) -65012 ENSMUSG00000097626.5 ENSMUSG00000097626 ENSMUST00000197496 4921504A21Rik antisense Interval_147387 chr7 66342113 66342940 + 0 NA exon (ENSMUSG00000015133.17, exon 3 of 3) protein_coding-exon (ENSMUSG00000015133.17, exon 3 of 3) -23379 ENSMUSG00000078677.1 ENSMUSG00000078677 ENSMUST00000107486 Gm10974 protein_coding Interval_9263 chr1 155646408 155647304 + 0 NA intron (ENSMUSG00000033701.13, intron 6 of 7) protein_coding-intron (ENSMUSG00000033701.13, intron 6 of 7) 83739 ENSMUSG00000033701.13 ENSMUSG00000033701 ENSMUST00000192730 Acbd6 protein_coding Interval_67778 chr16 57131003 57132403 + 0 NA intron (ENSMUSG00000022752.9, intron 1 of 11) protein_coding-intron (ENSMUSG00000022752.9, intron 1 of 11) -21557 ENSMUSG00000022752.9 ENSMUSG00000022752 ENSMUST00000231901 Tomm70a protein_coding Interval_155454 chr8 33679733 33681327 + 0 NA intron (ENSMUSG00000031584.16, intron 6 of 8) protein_coding-intron (ENSMUSG00000031584.16, intron 6 of 12) -11271 ENSMUSG00000088856.1 ENSMUSG00000088856 ENSMUST00000158231 Gm24727 snoRNA Interval_95137 chr2 104187860 104188588 + 0 NA intron (ENSMUSG00000068373.15, intron 10 of 10) protein_coding-intron (ENSMUSG00000068373.15, intron 16 of 20) 40014 ENSMUSG00000089606.1 ENSMUSG00000089606 ENSMUST00000158981 Gm22501 snoRNA Interval_100441 chr2 169030973 169031784 + 0 NA Intergenic Intergenic 11353 ENSMUSG00000052368.2 ENSMUSG00000052368 ENSMUST00000063891 Gm9873 lincRNA Interval_49685 chr13 113987304 113987580 + 0 NA intron (ENSMUSG00000042348.10, intron 5 of 5) protein_coding-intron (ENSMUSG00000042348.10, intron 4 of 4) 132974 ENSMUSG00000114696.1 ENSMUSG00000114696 ENSMUST00000223997 Gm47479 TEC Interval_144011 chr7 18957422 18958738 + 0 NA exon (ENSMUSG00000030411.16, exon 4 of 4) protein_coding-exon (ENSMUSG00000030411.16, exon 4 of 4) -29320 ENSMUSG00000051965.8 ENSMUSG00000051965 ENSMUST00000063563 Nanos2 protein_coding Interval_74513 chr17 52642846 52643427 + 0 NA intron (ENSMUSG00000035580.10, intron 1 of 15) protein_coding-intron (ENSMUSG00000035580.10, intron 1 of 15) -40476 ENSMUSG00000098552.1 ENSMUSG00000098552 ENSMUST00000183438 Gm27217 antisense Interval_148065 chr7 78955706 78956008 + 0 NA Intergenic Intergenic -31971 ENSMUSG00000108670.1 ENSMUSG00000108670 ENSMUST00000206812 Gm44815 TEC Interval_11539 chr1 182553771 182554428 + 0 NA intron (ENSMUSG00000103878.1, intron 2 of 2) transcribed_processed_pseudogene-intron (ENSMUSG00000103878.1, intron 2 of 2) 7849 ENSMUSG00000103878.1 ENSMUSG00000103878 ENSMUST00000192906 Gm8197 transcribed_processed_pseudogene Interval_114281 chr4 70536988 70537212 + 0 NA Intergenic Intergenic -2172 ENSMUSG00000039270.9 ENSMUSG00000039270 ENSMUST00000037881 Megf9 protein_coding Interval_112191 chr4 35386486 35386733 + 0 NA Intergenic Intergenic -14449 ENSMUSG00000083934.1 ENSMUSG00000083934 ENSMUST00000122251 Gm12368 processed_pseudogene Interval_126090 chr5 77302656 77303949 + 0 NA TTS (ENSMUSG00000036285.10) protein_coding-TTS (ENSMUSG00000036285.10) 6757 ENSMUSG00000036285.10 ENSMUSG00000036285 ENSMUST00000139435 Noa1 protein_coding Interval_61996 chr15 85734606 85736145 + 0 NA promoter-TSS (ENSMUSG00000022383.13) protein_coding-promoter-TSS (ENSMUSG00000022383.13) -264 ENSMUSG00000022383.13 ENSMUSG00000022383 ENSMUST00000136453 Ppara protein_coding Interval_40008 chr12 100465087 100465803 + 0 NA intron (ENSMUSG00000113895.1, intron 1 of 2) protein_coding-intron (ENSMUSG00000033530.8, intron 4 of 19) 406 ENSMUSG00000113895.1 ENSMUSG00000113895 ENSMUST00000221566 Gm48383 antisense Interval_3534 chr1 59422596 59423888 + 0 NA Intergenic Intergenic 26260 ENSMUSG00000104502.1 ENSMUSG00000104502 ENSMUST00000195013 Gm37737 TEC Interval_141012 chr6 124375528 124375772 + 0 NA TTS (ENSMUSG00000107988.1) lincRNA-TTS (ENSMUSG00000107988.1) 3488 ENSMUSG00000107988.1 ENSMUSG00000107988 ENSMUST00000204273 Gm44006 lincRNA Interval_74741 chr17 56263936 56264567 + 0 NA TTS (ENSMUSG00000043683.4) protein_coding-TTS (ENSMUSG00000043683.4) 7441 ENSMUSG00000043683.4 ENSMUSG00000043683 ENSMUST00000060253 Fem1a protein_coding Interval_577 chr1 7712993 7713192 + 0 NA Intergenic Intergenic 17473 ENSMUSG00000103557.1 ENSMUSG00000103557 ENSMUST00000194872 Gm38216 processed_pseudogene Interval_52393 chr14 45565305 45566901 + 0 NA intron (ENSMUSG00000115553.1, intron 1 of 1) antisense-intron (ENSMUSG00000085913.2, intron 1 of 2) 572 ENSMUSG00000115553.1 ENSMUSG00000115553 ENSMUST00000228948 Gm49124 lincRNA Interval_104979 chr3 79473381 79474043 + 0 NA intron (ENSMUSG00000061175.12, intron 7 of 9) protein_coding-intron (ENSMUSG00000061175.12, intron 14 of 16) 58164 ENSMUSG00000061175.12 ENSMUSG00000061175 ENSMUST00000139171 Fnip2 protein_coding Interval_118641 chr4 132941229 132941424 + 0 NA Intergenic Intergenic -10009 ENSMUSG00000087911.1 ENSMUSG00000087911 ENSMUST00000157286 Gm24913 snRNA Interval_52309 chr14 44602488 44602954 + 0 NA exon (ENSMUSG00000115801.1, exon 1 of 1) lincRNA-exon (ENSMUSG00000115801.1, exon 1 of 1) 6056 ENSMUSG00000072594.3 ENSMUSG00000072594 ENSMUST00000100687 Gm16439 processed_pseudogene Interval_12098 chr1 189740007 189740319 + 0 NA intron (ENSMUSG00000026604.17, intron 1 of 9) protein_coding-intron (ENSMUSG00000026604.17, intron 1 of 18) 54835 ENSMUSG00000103374.1 ENSMUSG00000103374 ENSMUST00000193510 Gm37239 processed_pseudogene Interval_45328 chr13 54456781 54458301 + 0 NA Intergenic Intergenic 11247 ENSMUSG00000025872.5 ENSMUSG00000025872 ENSMUST00000135404 Thoc3 protein_coding Interval_36138 chr12 36230487 36231880 + 0 NA intron (ENSMUSG00000020545.14, intron 3 of 7) protein_coding-intron (ENSMUSG00000020545.14, intron 3 of 8) -12965 ENSMUSG00000020545.14 ENSMUSG00000020545 ENSMUST00000222145 Lrrc72 protein_coding Interval_108716 chr3 130690790 130691808 + 0 NA Intergenic Intergenic 14650 ENSMUSG00000105466.1 ENSMUSG00000105466 ENSMUST00000197053 Gm42998 TEC Interval_55365 chr14 85298692 85299544 + 0 NA Intergenic Intergenic -179908 ENSMUSG00000115239.1 ENSMUSG00000115239 ENSMUST00000227214 Gm9264 processed_pseudogene Interval_76301 chr17 78903929 78905135 + 0 NA intron (ENSMUSG00000038045.14, intron 2 of 6) protein_coding-intron (ENSMUSG00000038045.14, intron 2 of 6) 2460 ENSMUSG00000038045.14 ENSMUSG00000038045 ENSMUST00000159710 Sult6b1 protein_coding Interval_12386 chr1 192825809 192826533 + 0 NA Intergenic Intergenic -5044 ENSMUSG00000103874.1 ENSMUSG00000103874 ENSMUST00000195130 Gm38360 processed_pseudogene Interval_153975 chr8 11580279 11580493 + 0 NA Intergenic Intergenic 24815 ENSMUSG00000045969.8 ENSMUSG00000045969 ENSMUST00000209565 Ing1 protein_coding Interval_143292 chr7 4988031 4988230 + 0 NA intron (ENSMUSG00000051550.10, intron 1 of 3) protein_coding-intron (ENSMUSG00000051550.10, intron 1 of 3) 7210 ENSMUSG00000051550.10 ENSMUSG00000051550 ENSMUST00000160808 Zfp579 protein_coding Interval_106771 chr3 100660708 100661386 + 0 NA intron (ENSMUSG00000008763.16, intron 1 of 5) protein_coding-intron (ENSMUSG00000008763.16, intron 1 of 12) 19047 ENSMUSG00000106184.1 ENSMUSG00000106184 ENSMUST00000195967 Gm43463 sense_intronic Interval_105840 chr3 89654948 89656036 + 0 NA intron (ENSMUSG00000000794.9, intron 5 of 7) protein_coding-intron (ENSMUSG00000000794.9, intron 5 of 7) -7026 ENSMUSG00000000794.9 ENSMUSG00000000794 ENSMUST00000124584 Kcnn3 protein_coding Interval_115103 chr4 89803712 89804045 + 0 NA Intergenic Intergenic 124442 ENSMUSG00000043753.2 ENSMUSG00000043753 ENSMUST00000052478 Dmrta1 protein_coding Interval_37636 chr12 70679944 70680737 + 0 NA exon (ENSMUSG00000112950.1, exon 2 of 4) lincRNA-exon (ENSMUSG00000112950.1, exon 2 of 4) 1510 ENSMUSG00000112950.1 ENSMUSG00000112950 ENSMUST00000222630 Gm32369 lincRNA Interval_149247 chr7 96654389 96655878 + 0 NA intron (ENSMUSG00000048078.16, intron 1 of 4) protein_coding-intron (ENSMUSG00000048078.16, intron 7 of 32) -26064 ENSMUSG00000085792.2 ENSMUSG00000085792 ENSMUST00000155217 Gm15414 antisense Interval_160455 chr8 109614433 109615115 + 0 NA promoter-TSS (ENSMUSG00000048827.12) protein_coding-promoter-TSS (ENSMUSG00000048827.12) -6408 ENSMUSG00000031730.18 ENSMUSG00000031730 ENSMUST00000128350 Dhodh protein_coding Interval_158117 chr8 78860899 78861314 + 0 NA Intergenic Intergenic 8762 ENSMUSG00000069986.4 ENSMUSG00000069986 ENSMUST00000093411 Gm8054 processed_pseudogene Interval_106701 chr3 99204946 99205771 + 0 NA exon (ENSMUSG00000004233.14, exon 4 of 4) protein_coding-exon (ENSMUSG00000004233.14, exon 4 of 4) -1064 ENSMUSG00000106197.1 ENSMUSG00000106197 ENSMUST00000197309 Gm42717 sense_intronic Interval_133080 chr5 149692991 149694211 + 0 NA intron (ENSMUSG00000051950.10, intron 1 of 14) protein_coding-intron (ENSMUSG00000051950.10, intron 1 of 14) -32378 ENSMUSG00000080002.2 ENSMUSG00000080002 ENSMUST00000116118 Gm5566 processed_pseudogene Interval_99643 chr2 163882778 163883710 + 0 NA intron (ENSMUSG00000035226.5, intron 1 of 5) protein_coding-intron (ENSMUSG00000035226.5, intron 1 of 5) 29511 ENSMUSG00000035238.4 ENSMUSG00000035238 ENSMUST00000109396 Kcnk15 protein_coding Interval_59447 chr15 53223722 53224580 + 0 NA intron (ENSMUSG00000061731.9, intron 1 of 10) protein_coding-intron (ENSMUSG00000061731.9, intron 1 of 10) -116283 ENSMUSG00000061731.9 ENSMUSG00000061731 ENSMUST00000140798 Ext1 protein_coding Interval_43958 chr13 38437870 38438846 + 0 NA intron (ENSMUSG00000039004.6, intron 1 of 3) protein_coding-intron (ENSMUSG00000039004.6, intron 1 of 6) 23447 ENSMUSG00000114895.1 ENSMUSG00000114895 ENSMUST00000225893 4930579J19Rik antisense Interval_55069 chr14 77687498 77687922 + 0 NA intron (ENSMUSG00000022012.9, intron 14 of 16) protein_coding-intron (ENSMUSG00000022012.9, intron 16 of 18) -53850 ENSMUSG00000115363.1 ENSMUSG00000115363 ENSMUST00000227098 Gm49003 antisense Interval_30280 chr11 92815849 92816287 + 0 NA Intergenic Intergenic -22789 ENSMUSG00000081141.1 ENSMUSG00000081141 ENSMUST00000118039 Gm11501 processed_pseudogene Interval_174353 chrX 147284337 147285208 + 0 NA Intergenic Intergenic 119060 ENSMUSG00000031289.10 ENSMUSG00000031289 ENSMUST00000112827 Il13ra2 protein_coding Interval_45165 chr13 52888058 52888793 + 0 NA intron (ENSMUSG00000021460.17, intron 4 of 9) protein_coding-intron (ENSMUSG00000021460.17, intron 5 of 9) 24521 ENSMUSG00000021460.17 ENSMUSG00000021460 ENSMUST00000151469 Auh protein_coding Interval_139989 chr6 113245745 113246134 + 0 NA intron (ENSMUSG00000030269.14, intron 2 of 6) protein_coding-intron (ENSMUSG00000030269.14, intron 2 of 18) -9893 ENSMUSG00000030269.14 ENSMUSG00000030269 ENSMUST00000151149 Mtmr14 protein_coding Interval_67533 chr16 50398478 50398997 + 0 NA intron (ENSMUSG00000022641.15, intron 2 of 16) protein_coding-intron (ENSMUSG00000022641.15, intron 2 of 15) 33572 ENSMUSG00000022641.15 ENSMUSG00000022641 ENSMUST00000130210 Bbx protein_coding Interval_59483 chr15 53998563 53999060 + 0 NA Intergenic Intergenic 37171 ENSMUSG00000097938.1 ENSMUSG00000097938 ENSMUST00000182320 Gm26933 processed_pseudogene Interval_1096 chr1 15651024 15651327 + 0 NA intron (ENSMUSG00000092083.4, intron 2 of 2) protein_coding-intron (ENSMUSG00000092083.4, intron 1 of 1) 34871 ENSMUSG00000088829.1 ENSMUSG00000088829 ENSMUST00000158204 Gm25227 snoRNA Interval_33727 chr11 118134679 118134893 + 0 NA intron (ENSMUSG00000017132.17, intron 12 of 13) protein_coding-intron (ENSMUSG00000017132.17, intron 12 of 13) 19931 ENSMUSG00000085511.1 ENSMUSG00000085511 ENSMUST00000134069 Gm11738 antisense Interval_82306 chr18 70537601 70537839 + 0 NA Intergenic Intergenic 20934 ENSMUSG00000098721.1 ENSMUSG00000098721 ENSMUST00000184246 Mir6357 miRNA Interval_109874 chr3 149281023 149281275 + 0 NA Intergenic Intergenic -23680 ENSMUSG00000105797.1 ENSMUSG00000105797 ENSMUST00000199768 Gm5149 lincRNA Interval_76648 chr17 83122540 83123391 + 0 NA Intergenic Intergenic -2224 ENSMUSG00000117509.1 ENSMUSG00000117509 ENSMUST00000234289 Gm46606 lincRNA Interval_34098 chr11 120513094 120514084 + 0 NA Intergenic Intergenic 15864 ENSMUSG00000025792.9 ENSMUSG00000025792 ENSMUST00000152187 Slc25a10 protein_coding Interval_34167 chr11 121034519 121035529 + 0 NA intron (ENSMUSG00000086835.2, intron 1 of 2) antisense-intron (ENSMUSG00000086835.2, intron 1 of 2) 4166 ENSMUSG00000080616.1 ENSMUSG00000080616 ENSMUST00000116966 Gm22152 snoRNA Interval_147719 chr7 72854042 72855123 + 0 NA Intergenic Intergenic 135571 ENSMUSG00000098035.1 ENSMUSG00000098035 ENSMUST00000182995 Gm5335 processed_pseudogene Interval_62289 chr15 89470066 89470666 + 0 NA Intergenic Intergenic 3905 ENSMUSG00000022620.14 ENSMUSG00000022620 ENSMUST00000168052 Arsa protein_coding Interval_149474 chr7 98887744 98888330 + 0 NA TTS (ENSMUSG00000035354.9) protein_coding-TTS (ENSMUSG00000035354.9) -7893 ENSMUSG00000109282.1 ENSMUSG00000109282 ENSMUST00000207592 Gm45188 antisense Interval_17599 chr10 78084747 78085364 + 0 NA Intergenic Intergenic 11716 ENSMUSG00000000732.9 ENSMUSG00000000732 ENSMUST00000219633 Icosl protein_coding Interval_13868 chr10 24086130 24086355 + 0 NA Intergenic Intergenic 6052 ENSMUSG00000100186.1 ENSMUSG00000100186 ENSMUST00000092654 Taar8b protein_coding Interval_137907 chr6 83284974 83285167 + 0 NA intron (ENSMUSG00000068323.12, intron 2 of 2) protein_coding-intron (ENSMUSG00000068323.12, intron 15 of 24) 7677 ENSMUSG00000068323.12 ENSMUSG00000068323 ENSMUST00000131432 Slc4a5 protein_coding Interval_151106 chr7 118579440 118580610 + 0 NA intron (ENSMUSG00000042246.5, intron 1 of 2) protein_coding-intron (ENSMUSG00000042246.5, intron 1 of 15) 4661 ENSMUSG00000042246.5 ENSMUSG00000042246 ENSMUST00000139693 Tmc7 protein_coding Interval_53974 chr14 63992777 63994464 + 0 NA intron (ENSMUSG00000046049.7, intron 1 of 3) protein_coding-intron (ENSMUSG00000046049.7, intron 1 of 3) -6117 ENSMUSG00000021961.6 ENSMUSG00000021961 ENSMUST00000225544 4930578I06Rik protein_coding Interval_170530 chr9 108541725 108541942 + 0 NA exon (ENSMUSG00000006673.14, exon 5 of 11) protein_coding-exon (ENSMUSG00000006673.14, exon 5 of 11) -2381 ENSMUSG00000103970.1 ENSMUSG00000103970 ENSMUST00000192908 Gm37678 TEC Interval_39397 chr12 87155598 87155967 + 0 NA promoter-TSS (ENSMUSG00000113918.1) antisense-promoter-TSS (ENSMUSG00000113918.1) -296 ENSMUSG00000113918.1 ENSMUSG00000113918 ENSMUST00000221468 Gm6566 antisense Interval_18889 chr10 92538781 92539127 + 0 NA Intergenic Intergenic 4716 ENSMUSG00000111759.1 ENSMUSG00000111759 ENSMUST00000215776 Gm4800 processed_pseudogene Interval_63132 chr15 99259451 99260492 + 0 NA intron (ENSMUSG00000100599.2, intron 1 of 2) processed_transcript-intron (ENSMUSG00000100599.2, intron 1 of 1) -4957 ENSMUSG00000093139.1 ENSMUSG00000093139 ENSMUST00000175398 Gm25999 snoRNA Interval_29612 chr11 85392204 85393290 + 0 NA intron (ENSMUSG00000059439.15, intron 5 of 26) protein_coding-intron (ENSMUSG00000059439.15, intron 5 of 24) -73412 ENSMUSG00000059439.15 ENSMUSG00000059439 ENSMUST00000140562 Bcas3 protein_coding Interval_167614 chr9 71160827 71161815 + 0 NA intron (ENSMUSG00000032204.13, intron 1 of 6) protein_coding-intron (ENSMUSG00000032204.13, intron 1 of 5) 7361 ENSMUSG00000032204.13 ENSMUSG00000032204 ENSMUST00000138364 Aqp9 protein_coding Interval_127438 chr5 103931456 103932538 + 0 NA Intergenic Intergenic 33118 ENSMUSG00000095133.1 ENSMUSG00000095133 ENSMUST00000179033 Gm24897 snRNA Interval_150607 chr7 112780625 112781575 + 0 NA intron (ENSMUSG00000055320.18, intron 2 of 13) protein_coding-intron (ENSMUSG00000055320.18, intron 2 of 13) 67149 ENSMUSG00000106046.1 ENSMUSG00000106046 ENSMUST00000199696 Gm44462 miRNA Interval_91055 chr2 34720313 34720963 + 0 NA exon (ENSMUSG00000026867.18, exon 7 of 26) protein_coding-exon (ENSMUSG00000026867.18, exon 7 of 26) -19539 ENSMUSG00000026867.18 ENSMUSG00000026867 ENSMUST00000142436 Gapvd1 protein_coding Interval_166086 chr9 56512081 56513506 + 0 NA Intergenic Intergenic -6132 ENSMUSG00000111343.1 ENSMUSG00000111343 ENSMUST00000216940 Gm47175 TEC Interval_56538 chr14 120148524 120148813 + 0 NA intron (ENSMUSG00000115146.1, intron 2 of 8) lincRNA-intron (ENSMUSG00000115146.1, intron 2 of 8) -7039 ENSMUSG00000115146.1 ENSMUSG00000115146 ENSMUST00000226598 Gm4681 lincRNA Interval_117596 chr4 124911876 124912750 + 0 NA intron (ENSMUSG00000028876.7, intron 8 of 14) protein_coding-intron (ENSMUSG00000028876.7, intron 8 of 14) 12911 ENSMUSG00000028876.7 ENSMUSG00000028876 ENSMUST00000151791 Epha10 protein_coding Interval_13821 chr10 23080925 23081538 + 0 NA Intergenic Intergenic 85740 ENSMUSG00000094033.1 ENSMUSG00000094033 ENSMUST00000178790 Gm24655 snRNA Interval_106494 chr3 96684411 96685443 + 0 NA exon (ENSMUSG00000038354.13, exon 10 of 13) protein_coding-exon (ENSMUSG00000038354.13, exon 10 of 13) 4834 ENSMUSG00000038354.13 ENSMUSG00000038354 ENSMUST00000130429 Ankrd35 protein_coding Interval_129839 chr5 122664996 122665431 + 0 NA intron (ENSMUSG00000029468.17, intron 7 of 12) protein_coding-intron (ENSMUSG00000029468.17, intron 7 of 12) 14789 ENSMUSG00000029468.17 ENSMUSG00000029468 ENSMUST00000197042 P2rx7 protein_coding Interval_43823 chr13 37396095 37396302 + 0 NA intron (ENSMUSG00000021423.6, intron 3 of 4) protein_coding-intron (ENSMUSG00000021423.6, intron 3 of 4) 38951 ENSMUSG00000100760.1 ENSMUSG00000100760 ENSMUST00000190684 Gm4035 lincRNA Interval_173577 chrX 99725312 99726458 + 0 NA Intergenic Intergenic -38111 ENSMUSG00000082505.1 ENSMUSG00000082505 ENSMUST00000117174 Gm14816 processed_pseudogene Interval_117411 chr4 123555979 123556522 + 0 NA intron (ENSMUSG00000028649.21, intron 1 of 97) protein_coding-intron (ENSMUSG00000028649.21, intron 1 of 92) 57493 ENSMUSG00000028649.21 ENSMUSG00000028649 ENSMUST00000146000 Macf1 protein_coding Interval_62669 chr15 96145827 96146269 + 0 NA intron (ENSMUSG00000097536.2, intron 5 of 6) lincRNA-intron (ENSMUSG00000097536.2, intron 5 of 6) -91223 ENSMUSG00000078925.11 ENSMUSG00000078925 ENSMUST00000140253 D030018L15Rik lincRNA Interval_66559 chr16 35084733 35084967 + 0 NA intron (ENSMUSG00000035376.10, intron 2 of 3) protein_coding-intron (ENSMUSG00000035376.10, intron 4 of 6) 36235 ENSMUSG00000035376.10 ENSMUSG00000035376 ENSMUST00000231556 Hacd2 protein_coding Interval_8649 chr1 146112885 146113671 + 0 NA Intergenic Intergenic -307158 ENSMUSG00000090323.2 ENSMUSG00000090323 ENSMUST00000163646 Gm5263 processed_pseudogene Interval_108187 chr3 122285458 122285993 + 0 NA TTS (ENSMUSG00000039756.12) protein_coding-TTS (ENSMUSG00000039756.12) -7714 ENSMUSG00000105057.1 ENSMUSG00000105057 ENSMUST00000196570 Gm40190 lincRNA Interval_31859 chr11 103406525 103407689 + 0 NA intron (ENSMUSG00000034247.9, intron 1 of 11) protein_coding-intron (ENSMUSG00000034247.9, intron 1 of 11) -12339 ENSMUSG00000034247.9 ENSMUSG00000034247 ENSMUST00000184350 Plekhm1 protein_coding Interval_129207 chr5 118194441 118194813 + 0 NA exon (ENSMUSG00000032850.16, exon 2 of 2) protein_coding-exon (ENSMUSG00000032850.16, exon 2 of 2) 16715 ENSMUSG00000089248.1 ENSMUSG00000089248 ENSMUST00000158623 Gm24050 misc_RNA Interval_137479 chr6 72690331 72691137 + 0 NA intron (ENSMUSG00000055799.13, intron 2 of 5) protein_coding-intron (ENSMUSG00000055799.13, intron 3 of 11) -8480 ENSMUSG00000079524.2 ENSMUSG00000079524 ENSMUST00000114051 Gm15402 antisense Interval_164082 chr9 31369130 31369847 + 0 NA intron (ENSMUSG00000042496.18, intron 19 of 20) protein_coding-intron (ENSMUSG00000042496.18, intron 19 of 20) -26663 ENSMUSG00000042185.14 ENSMUSG00000042185 ENSMUST00000143558 Nfrkb protein_coding Interval_174074 chrX 134318898 134319332 + 0 NA intron (ENSMUSG00000031262.12, intron 3 of 12) protein_coding-intron (ENSMUSG00000031262.12, intron 7 of 22) 7117 ENSMUSG00000031262.12 ENSMUSG00000031262 ENSMUST00000125604 Cenpi protein_coding Interval_101916 chr3 11211019 11214313 + 0 NA Intergenic Intergenic 58329 ENSMUSG00000095289.1 ENSMUSG00000095289 ENSMUST00000175281 Gm22547 miRNA Interval_87268 chr19 47317824 47318422 + 0 NA intron (ENSMUSG00000053617.12, intron 7 of 13) protein_coding-intron (ENSMUSG00000053617.12, intron 7 of 14) -44534 ENSMUSG00000098786.1 ENSMUSG00000098786 ENSMUST00000183658 Mir6995 miRNA Interval_55350 chr14 84272791 84273415 + 0 NA Intergenic Intergenic -118207 ENSMUSG00000115227.1 ENSMUSG00000115227 ENSMUST00000227972 Gm49057 processed_pseudogene Interval_86011 chr19 34899963 34900224 + 0 NA Intergenic Intergenic -22240 ENSMUSG00000033610.16 ENSMUSG00000033610 ENSMUST00000237577 Pank1 protein_coding Interval_56946 chr14 123925208 123925547 + 0 NA intron (ENSMUSG00000032925.16, intron 7 of 10) protein_coding-intron (ENSMUSG00000032925.16, intron 7 of 10) -8341 ENSMUSG00000077481.1 ENSMUSG00000077481 ENSMUST00000104293 Gm25272 snoRNA Interval_37165 chr12 59099205 59099462 + 0 NA intron (ENSMUSG00000021000.17, intron 1 of 3) protein_coding-intron (ENSMUSG00000021000.17, intron 1 of 29) 3534 ENSMUSG00000021000.17 ENSMUSG00000021000 ENSMUST00000175685 Mia2 protein_coding Interval_83337 chr18 84356907 84357393 + 0 NA intron (ENSMUSG00000048410.17, intron 4 of 8) protein_coding-intron (ENSMUSG00000048410.17, intron 2 of 2) 18996 ENSMUSG00000102951.1 ENSMUSG00000102951 ENSMUST00000193817 Gm37216 TEC Interval_152884 chr7 139472769 139473456 + 0 NA intron (ENSMUSG00000025477.14, intron 1 of 3) protein_coding-intron (ENSMUSG00000025477.14, intron 2 of 15) -43547 ENSMUSG00000025477.14 ENSMUSG00000025477 ENSMUST00000152475 Inpp5a protein_coding Interval_78837 chr18 20912926 20913534 + 0 NA Intergenic Intergenic -17137 ENSMUSG00000033382.15 ENSMUSG00000033382 ENSMUST00000224530 Trappc8 protein_coding Interval_91241 chr2 36242564 36243295 + 0 NA exon (ENSMUSG00000047250.13, exon 8 of 11) protein_coding-exon (ENSMUSG00000047250.13, exon 8 of 11) 2216 ENSMUSG00000047250.13 ENSMUSG00000047250 ENSMUST00000133777 Ptgs1 protein_coding Interval_79493 chr18 32340248 32340790 + 0 NA Intergenic Intergenic -36711 ENSMUSG00000024381.16 ENSMUSG00000024381 ENSMUST00000234373 Bin1 protein_coding Interval_168448 chr9 80608739 80608981 + 0 NA Intergenic Intergenic -7763 ENSMUSG00000111510.2 ENSMUSG00000111510 ENSMUST00000214415 Gm48387 lincRNA Interval_37629 chr12 70549204 70550015 + 0 NA Intergenic Intergenic 27011 ENSMUSG00000113302.1 ENSMUSG00000113302 ENSMUST00000221234 Gm32219 lincRNA Interval_165138 chr9 44760641 44762081 + 0 NA TTS (ENSMUSG00000032096.16) protein_coding-TTS (ENSMUSG00000032096.16) 3195 ENSMUSG00000032096.16 ENSMUSG00000032096 ENSMUST00000215140 Arcn1 protein_coding Interval_165472 chr9 48509296 48509504 + 0 NA Intergenic Intergenic -2340 ENSMUSG00000080401.1 ENSMUSG00000080401 ENSMUST00000116751 Gm23653 miRNA Interval_47839 chr13 93665762 93666366 + 0 NA intron (ENSMUSG00000042118.7, intron 4 of 7) protein_coding-intron (ENSMUSG00000042118.7, intron 4 of 7) 8238 ENSMUSG00000042118.7 ENSMUSG00000042118 ENSMUST00000015941 Bhmt2 protein_coding Interval_35838 chr12 31092334 31093116 + 0 NA Intergenic Intergenic -3255 ENSMUSG00000112876.1 ENSMUSG00000112876 ENSMUST00000217880 Gm32443 lincRNA Interval_11089 chr1 179266615 179267415 + 0 NA intron (ENSMUSG00000055067.15, intron 5 of 11) protein_coding-intron (ENSMUSG00000055067.15, intron 5 of 11) 250990 ENSMUSG00000055067.15 ENSMUSG00000055067 ENSMUST00000194237 Smyd3 protein_coding Interval_50737 chr14 18728321 18729199 + 0 NA intron (ENSMUSG00000058317.12, intron 3 of 4) protein_coding-intron (ENSMUSG00000058317.12, intron 2 of 4) -85409 ENSMUSG00000077689.1 ENSMUSG00000077689 ENSMUST00000104501 Gm22499 snoRNA Interval_36730 chr12 52633891 52634093 + 0 NA Intergenic Intergenic 26322 ENSMUSG00000112412.1 ENSMUSG00000112412 ENSMUST00000218346 Gm35239 lincRNA Interval_148148 chr7 79494022 79494320 + 0 NA Intergenic Intergenic -5867 ENSMUSG00000097023.8 ENSMUSG00000097023 ENSMUST00000182125 Mir9-3hg lincRNA Interval_55563 chr14 92401602 92401858 + 0 NA Intergenic Intergenic -33101 ENSMUSG00000077298.1 ENSMUSG00000077298 ENSMUST00000104110 Gm24127 snoRNA Interval_85246 chr19 24152924 24154097 + 0 NA promoter-TSS (ENSMUSG00000118371.1) processed_pseudogene-promoter-TSS (ENSMUSG00000118371.1) -560 ENSMUSG00000118371.1 ENSMUSG00000118371 ENSMUST00000237530 Gm50308 processed_pseudogene Interval_48568 chr13 100379764 100380061 + 0 NA promoter-TSS (ENSMUSG00000082956.4) unprocessed_pseudogene-promoter-TSS (ENSMUSG00000082956.4) -952 ENSMUSG00000082956.4 ENSMUSG00000082956 ENSMUST00000118082 Naip3 unprocessed_pseudogene Interval_35276 chr12 19606056 19607795 + 0 NA promoter-TSS (ENSMUSG00000113957.1) unprocessed_pseudogene-promoter-TSS (ENSMUSG00000113957.1) -4 ENSMUSG00000113957.1 ENSMUSG00000113957 ENSMUST00000221254 Gm9257 unprocessed_pseudogene Interval_146474 chr7 46209030 46209593 + 0 NA exon (ENSMUSG00000030838.20, exon 18 of 27) protein_coding-exon (ENSMUSG00000030838.20, exon 18 of 27) 4762 ENSMUSG00000110060.1 ENSMUSG00000110060 ENSMUST00000211426 Gm9860 TEC Interval_90029 chr2 27396473 27396898 + 0 NA intron (ENSMUSG00000009621.18, intron 1 of 27) protein_coding-intron (ENSMUSG00000009621.18, intron 1 of 27) -5167 ENSMUSG00000076364.1 ENSMUSG00000076364 ENSMUST00000102409 Gm24049 miRNA Interval_72317 chr17 29170985 29172423 + 0 NA intron (ENSMUSG00000024008.16, intron 3 of 7) protein_coding-intron (ENSMUSG00000024008.16, intron 12 of 20) -12199 ENSMUSG00000024008.16 ENSMUSG00000024008 ENSMUST00000126755 Cpne5 protein_coding Interval_52677 chr14 48513454 48513942 + 0 NA TTS (ENSMUSG00000036339.18) protein_coding-TTS (ENSMUSG00000036339.18) -9935 ENSMUSG00000115756.1 ENSMUSG00000115756 ENSMUST00000226673 Gm49519 processed_transcript Interval_164789 chr9 41889981 41891503 + 0 NA promoter-TSS (ENSMUSG00000111726.1) lincRNA-promoter-TSS (ENSMUSG00000111726.1) -138 ENSMUSG00000111726.1 ENSMUSG00000111726 ENSMUST00000217258 Gm40513 lincRNA Interval_112652 chr4 43823347 43824407 + 0 NA promoter-TSS (ENSMUSG00000110970.2) protein_coding-promoter-TSS (ENSMUSG00000110970.2) -11 ENSMUSG00000110970.2 ENSMUSG00000110970 ENSMUST00000079465 Olfr156 protein_coding Interval_4099 chr1 68178851 68179331 + 0 NA intron (ENSMUSG00000062209.15, intron 20 of 26) protein_coding-intron (ENSMUSG00000062209.15, intron 20 of 27) -62544 ENSMUSG00000102449.1 ENSMUSG00000102449 ENSMUST00000193344 Gm37100 TEC Interval_197 KB469739.1 73444 74186 + 0 NA NA NA NA NA Interval_25238 chr11 45766964 45767202 + 0 NA Intergenic Intergenic -41004 ENSMUSG00000086686.1 ENSMUSG00000086686 ENSMUST00000137002 F630206G17Rik processed_transcript Interval_69778 chr16 96230541 96231037 + 0 NA Intergenic Intergenic 30118 ENSMUSG00000040666.19 ENSMUSG00000040666 ENSMUST00000233577 Sh3bgr protein_coding Interval_37857 chr12 72621210 72621455 + 0 NA TTS (ENSMUSG00000113143.1) processed_pseudogene-TTS (ENSMUSG00000113143.1) 557 ENSMUSG00000113143.1 ENSMUSG00000113143 ENSMUST00000222501 Ly6e-ps1 processed_pseudogene Interval_150932 chr7 116420659 116422221 + 0 NA intron (ENSMUSG00000030660.9, intron 1 of 4) protein_coding-intron (ENSMUSG00000030660.9, intron 1 of 32) -10637 ENSMUSG00000108359.1 ENSMUSG00000108359 ENSMUST00000205973 C430039J01Rik TEC Interval_121444 chr4 155833747 155834310 + 0 NA TTS (ENSMUSG00000065990.12) protein_coding-TTS (ENSMUSG00000065990.12) 2409 ENSMUSG00000065990.12 ENSMUSG00000065990 ENSMUST00000105591 Aurkaip1 protein_coding Interval_52840 chr14 50995265 50996078 + 0 NA TTS (ENSMUSG00000114997.1) processed_pseudogene-TTS (ENSMUSG00000114997.1) 1404 ENSMUSG00000114997.1 ENSMUSG00000114997 ENSMUST00000228496 Gm49038 processed_pseudogene Interval_91427 chr2 38722151 38723294 + 0 NA TTS (ENSMUSG00000063972.13) protein_coding-TTS (ENSMUSG00000063972.13) 10046 ENSMUSG00000087164.1 ENSMUSG00000087164 ENSMUST00000146954 Nr5a1os antisense Interval_109681 chr3 145968717 145969887 + 0 NA Intergenic Intergenic -18835 ENSMUSG00000036863.12 ENSMUSG00000036863 ENSMUST00000195918 Syde2 protein_coding Interval_61757 chr15 83879426 83881017 + 0 NA intron (ENSMUSG00000022441.17, intron 26 of 31) protein_coding-intron (ENSMUSG00000022441.17, intron 1 of 2) 66378 ENSMUSG00000022441.17 ENSMUSG00000022441 ENSMUST00000122836 Efcab6 protein_coding Interval_120640 chr4 149825628 149826358 + 0 NA Intergenic Intergenic 8229 ENSMUSG00000106221.1 ENSMUSG00000106221 ENSMUST00000199807 Gm47301 miRNA Interval_53099 chr14 54441579 54442003 + 0 NA TTS (ENSMUSG00000000957.11) protein_coding-TTS (ENSMUSG00000000957.11) 3199 ENSMUSG00000000957.11 ENSMUSG00000000957 ENSMUST00000226710 Mmp14 protein_coding Interval_85653 chr19 29361483 29362383 + 0 NA promoter-TSS (ENSMUSG00000016495.12) protein_coding-promoter-TSS (ENSMUSG00000016495.12) -526 ENSMUSG00000016495.12 ENSMUSG00000016495 ENSMUST00000139176 Plgrkt protein_coding Interval_52333 chr14 45175131 45175498 + 0 NA intron (ENSMUSG00000021830.14, intron 7 of 8) protein_coding-intron (ENSMUSG00000021830.14, intron 7 of 20) 7797 ENSMUSG00000021830.14 ENSMUSG00000021830 ENSMUST00000123118 Txndc16 protein_coding Interval_171333 chr9 116464449 116465327 + 0 NA Intergenic Intergenic 133720 ENSMUSG00000110752.1 ENSMUSG00000110752 ENSMUST00000217456 D730003K21Rik lincRNA Interval_122481 chr5 23367485 23367710 + 0 NA Intergenic Intergenic -8899 ENSMUSG00000105091.1 ENSMUSG00000105091 ENSMUST00000196054 Gm43722 processed_pseudogene Interval_98253 chr2 150484471 150485703 + 0 NA promoter-TSS (ENSMUSG00000074731.3) protein_coding-promoter-TSS (ENSMUSG00000074731.3) 4 ENSMUSG00000074731.3 ENSMUSG00000074731 ENSMUST00000109914 Zfp345 protein_coding Interval_55933 chr14 102942926 102943188 + 0 NA Intergenic Intergenic 39575 ENSMUSG00000092901.1 ENSMUSG00000092901 ENSMUST00000175160 Mir5130 miRNA Interval_118969 chr4 134773064 134773640 + 0 NA Intergenic Intergenic -23245 ENSMUSG00000037295.7 ENSMUSG00000037295 ENSMUST00000140678 Ldlrap1 protein_coding Interval_5894 chr1 93011960 93012269 + 0 NA exon (ENSMUSG00000045091.4, exon 3 of 3) protein_coding-exon (ENSMUSG00000045091.4, exon 3 of 3) 5780 ENSMUSG00000045091.4 ENSMUSG00000045091 ENSMUST00000059676 Aqp12 protein_coding Interval_25016 chr11 43126252 43127302 + 0 NA Intergenic Intergenic -10483 ENSMUSG00000085951.1 ENSMUSG00000085951 ENSMUST00000142108 Gm12145 lincRNA Interval_111207 chr4 14844821 14846207 + 0 NA Intergenic Intergenic -18562 ENSMUSG00000028221.3 ENSMUSG00000028221 ENSMUST00000029875 Pip4p2 protein_coding Interval_49469 chr13 112269291 112269635 + 0 NA Intergenic Intergenic -18988 ENSMUSG00000049985.15 ENSMUSG00000049985 ENSMUST00000223871 Ankrd55 protein_coding Interval_88955 chr2 13492122 13492480 + 0 NA promoter-TSS (ENSMUSG00000026726.10) protein_coding-promoter-TSS (ENSMUSG00000026726.10) -36674 ENSMUSG00000026726.10 ENSMUSG00000026726 ENSMUST00000148506 Cubn protein_coding Interval_24756 chr11 36757251 36757862 + 0 NA intron (ENSMUSG00000049336.16, intron 2 of 28) protein_coding-intron (ENSMUSG00000049336.16, intron 2 of 28) 34674 ENSMUSG00000065173.1 ENSMUSG00000065173 ENSMUST00000083239 Gm22127 snRNA Interval_86663 chr19 42384734 42385692 + 0 NA intron (ENSMUSG00000042401.8, intron 2 of 14) protein_coding-intron (ENSMUSG00000042401.8, intron 2 of 14) -6112 ENSMUSG00000117706.1 ENSMUSG00000117706 ENSMUST00000237236 Gm50184 processed_pseudogene Interval_152465 chr7 133141821 133142257 + 0 NA exon (ENSMUSG00000109816.1, exon 3 of 3) lincRNA-exon (ENSMUSG00000109816.1, exon 3 of 3) 13788 ENSMUSG00000109816.1 ENSMUSG00000109816 ENSMUST00000209850 4930483O08Rik lincRNA Interval_156927 chr8 61745713 61745978 + 0 NA intron (ENSMUSG00000058056.16, intron 2 of 21) protein_coding-intron (ENSMUSG00000058056.16, intron 2 of 19) 75671 ENSMUSG00000110131.1 ENSMUSG00000110131 ENSMUST00000210904 Gm18066 processed_pseudogene Interval_88423 chr2 4988864 4989078 + 0 NA TTS (ENSMUSG00000026669.14) protein_coding-TTS (ENSMUSG00000026669.14) 5867 ENSMUSG00000026669.14 ENSMUSG00000026669 ENSMUST00000125851 Mcm10 protein_coding Interval_72452 chr17 29879984 29880745 + 0 NA intron (ENSMUSG00000043557.16, intron 1 of 4) protein_coding-intron (ENSMUSG00000043557.16, intron 1 of 15) -9720 ENSMUSG00000086534.2 ENSMUSG00000086534 ENSMUST00000149552 Gm16758 antisense Interval_12523 chr1 194816571 194817268 + 0 NA TTS (ENSMUSG00000026640.12) protein_coding-TTS (ENSMUSG00000026640.12) 3168 ENSMUSG00000103597.1 ENSMUSG00000103597 ENSMUST00000191940 Gm19777 processed_pseudogene Interval_125343 chr5 66320771 66321275 + 0 NA TTS (ENSMUSG00000106818.1) TEC-TTS (ENSMUSG00000106818.1) 1994 ENSMUSG00000106818.1 ENSMUSG00000106818 ENSMUST00000202694 Gm43790 TEC Interval_14462 chr10 34066272 34067309 + 0 NA intron (ENSMUSG00000071340.2, intron 2 of 3) protein_coding-intron (ENSMUSG00000071340.2, intron 4 of 6) 6768 ENSMUSG00000071340.2 ENSMUSG00000071340 ENSMUST00000220095 Trappc3l protein_coding Interval_62831 chr15 97291628 97292788 + 0 NA intron (ENSMUSG00000044250.8, intron 3 of 5) protein_coding-intron (ENSMUSG00000044250.8, intron 3 of 5) 10766 ENSMUSG00000116291.1 ENSMUSG00000116291 ENSMUST00000229443 Gm4383 processed_pseudogene Interval_23741 chr11 25679429 25680478 + 0 NA intron (ENSMUSG00000032985.15, intron 2 of 5) protein_coding-intron (ENSMUSG00000032985.15, intron 4 of 6) -5187 ENSMUSG00000064761.1 ENSMUSG00000064761 ENSMUST00000082827 Gm23514 snoRNA Interval_87557 chr19 53423200 53423941 + 0 NA Intergenic Intergenic 32781 ENSMUSG00000117768.1 ENSMUSG00000117768 ENSMUST00000238029 8030456M14Rik bidirectional_promoter_lncRNA Interval_68957 chr16 89679018 89679507 + 0 NA Intergenic Intergenic -45122 ENSMUSG00000116651.1 ENSMUSG00000116651 ENSMUST00000232201 Gm17844 processed_pseudogene Interval_167170 chr9 65811297 65811749 + 0 NA intron (ENSMUSG00000040524.9, intron 1 of 9) protein_coding-intron (ENSMUSG00000040524.9, intron 1 of 9) -13611 ENSMUSG00000040524.9 ENSMUSG00000040524 ENSMUST00000160747 Zfp609 protein_coding Interval_161403 chr8 120268186 120269293 + 0 NA intron (ENSMUSG00000031822.20, intron 1 of 2) protein_coding-intron (ENSMUSG00000092329.1, intron 1 of 15) -40509 ENSMUSG00000097960.1 ENSMUSG00000097960 ENSMUST00000183235 A330074K22Rik lincRNA Interval_13077 chr10 11181338 11181567 + 0 NA intron (ENSMUSG00000090112.8, intron 15 of 20) protein_coding-intron (ENSMUSG00000090112.8, intron 15 of 29) -23567 ENSMUSG00000090112.8 ENSMUSG00000090112 ENSMUST00000161910 Shprh protein_coding Interval_144857 chr7 28637396 28638385 + 0 NA intron (ENSMUSG00000108905.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000108905.1, intron 1 of 1) -4497 ENSMUSG00000108865.1 ENSMUSG00000108865 ENSMUST00000209122 Gm44617 processed_transcript Interval_169132 chr9 93297333 93297988 + 0 NA Intergenic Intergenic 94710 ENSMUSG00000098171.1 ENSMUSG00000098171 ENSMUST00000183322 Gm9621 processed_pseudogene Interval_124913 chr5 60309658 60309971 + 0 NA Intergenic Intergenic 78331 ENSMUSG00000087034.4 ENSMUSG00000087034 ENSMUST00000117165 Cbfa2t2-ps1 processed_pseudogene Interval_65311 chr16 21431663 21432177 + 0 NA intron (ENSMUSG00000033653.18, intron 1 of 1) protein_coding-intron (ENSMUSG00000033653.18, intron 1 of 43) -98791 ENSMUSG00000116632.1 ENSMUSG00000116632 ENSMUST00000231972 Magef1 transcribed_processed_pseudogene Interval_168062 chr9 75783067 75784500 + 0 NA intron (ENSMUSG00000032179.7, intron 1 of 6) protein_coding-intron (ENSMUSG00000032179.7, intron 1 of 6) -44239 ENSMUSG00000032179.7 ENSMUSG00000032179 ENSMUST00000137213 Bmp5 protein_coding Interval_146221 chr7 44822758 44823680 + 0 NA intron (ENSMUSG00000109511.1, intron 1 of 1) protein_coding-intron (ENSMUSG00000109511.1, intron 1 of 1) -6645 ENSMUSG00000038539.15 ENSMUSG00000038539 ENSMUST00000209072 Atf5 protein_coding Interval_139953 chr6 113014426 113014621 + 0 NA Intergenic Intergenic 21411 ENSMUSG00000065309.1 ENSMUSG00000065309 ENSMUST00000083375 Gm23244 snRNA Interval_38722 chr12 81603351 81603524 + 0 NA Intergenic Intergenic -9488 ENSMUSG00000002679.14 ENSMUSG00000002679 ENSMUST00000159187 Med6 protein_coding Interval_119859 chr4 140541273 140542652 + 0 NA intron (ENSMUSG00000040964.16, intron 11 of 15) protein_coding-intron (ENSMUSG00000040964.16, intron 24 of 27) 75103 ENSMUSG00000040964.16 ENSMUSG00000040964 ENSMUST00000154979 Arhgef10l protein_coding Interval_2246 chr1 37324352 37325163 + 0 NA intron (ENSMUSG00000026113.17, intron 1 of 25) protein_coding-intron (ENSMUSG00000026113.17, intron 1 of 25) 6747 ENSMUSG00000102879.1 ENSMUSG00000102879 ENSMUST00000192652 Gm37135 TEC Interval_105870 chr3 89842289 89843830 + 0 NA intron (ENSMUSG00000046280.9, intron 2 of 5) protein_coding-intron (ENSMUSG00000046280.9, intron 2 of 5) 5170 ENSMUSG00000046280.9 ENSMUSG00000046280 ENSMUST00000197454 She protein_coding Interval_161704 chr8 122177205 122177619 + 0 NA intron (ENSMUSG00000092329.1, intron 1 of 15) protein_coding-intron (ENSMUSG00000092329.1, intron 1 of 15) -81208 ENSMUSG00000043903.4 ENSMUSG00000043903 ENSMUST00000055537 Zfp469 protein_coding Interval_21418 chr10 128491314 128491721 + 0 NA TTS (ENSMUSG00000090841.2) protein_coding-TTS (ENSMUSG00000090841.2) 2312 ENSMUSG00000090841.2 ENSMUSG00000090841 ENSMUST00000217913 Myl6 protein_coding Interval_34054 chr11 120216093 120217231 + 0 NA exon (ENSMUSG00000086750.1, exon 1 of 2) antisense-exon (ENSMUSG00000086750.1, exon 1 of 2) 331 ENSMUSG00000086750.1 ENSMUSG00000086750 ENSMUST00000135048 Gm11770 antisense Interval_168063 chr9 75786697 75786921 + 0 NA intron (ENSMUSG00000032179.7, intron 1 of 6) protein_coding-intron (ENSMUSG00000032179.7, intron 1 of 6) -41213 ENSMUSG00000032179.7 ENSMUSG00000032179 ENSMUST00000137213 Bmp5 protein_coding Interval_114982 chr4 88044843 88045065 + 0 NA TTS (ENSMUSG00000081530.1) processed_pseudogene-TTS (ENSMUSG00000081530.1) 1150 ENSMUSG00000081530.1 ENSMUSG00000081530 ENSMUST00000119144 Gm12646 processed_pseudogene Interval_61907 chr15 85084865 85085946 + 0 NA intron (ENSMUSG00000022432.7, intron 2 of 3) protein_coding-intron (ENSMUSG00000022432.7, intron 19 of 24) 5510 ENSMUSG00000022432.7 ENSMUSG00000022432 ENSMUST00000227591 Smc1b protein_coding Interval_23481 chr11 22850351 22851965 + 0 NA intron (ENSMUSG00000098650.1, intron 2 of 2) protein_coding-intron (ENSMUSG00000051650.11, intron 1 of 1) 4290 ENSMUSG00000077621.1 ENSMUSG00000077621 ENSMUST00000104433 Gm23772 snoRNA Interval_39525 chr12 89291289 89291557 + 0 NA intron (ENSMUSG00000066392.12, intron 5 of 18) protein_coding-intron (ENSMUSG00000066392.12, intron 6 of 19) 7160 ENSMUSG00000098757.1 ENSMUSG00000098757 ENSMUST00000183500 Gm27313 miRNA Interval_163382 chr9 21183271 21184529 + 0 NA promoter-TSS (ENSMUSG00000032177.17) protein_coding-promoter-TSS (ENSMUSG00000032177.17) -201 ENSMUSG00000032177.17 ENSMUSG00000032177 ENSMUST00000003395 Pde4a protein_coding Interval_159944 chr8 105325712 105326948 + 0 NA promoter-TSS (ENSMUSG00000014856.12) protein_coding-promoter-TSS (ENSMUSG00000014856.12) -32 ENSMUSG00000014856.12 ENSMUSG00000014856 ENSMUST00000109372 Tmem208 protein_coding Interval_65602 chr16 23967312 23968114 + 0 NA TTS (ENSMUSG00000022508.5) protein_coding-TTS (ENSMUSG00000022508.5) 4667 ENSMUSG00000022508.5 ENSMUSG00000022508 ENSMUST00000135352 Bcl6 protein_coding Interval_14615 chr10 37014048 37016942 + 0 NA Intergenic Intergenic 23729 ENSMUSG00000019777.16 ENSMUSG00000019777 ENSMUST00000123010 Hdac2 protein_coding Interval_145198 chr7 30598904 30600657 + 0 NA promoter-TSS (ENSMUSG00000006310.10) protein_coding-promoter-TSS (ENSMUSG00000006310.10) -871 ENSMUSG00000006310.10 ENSMUSG00000006310 ENSMUST00000144532 Zbtb32 protein_coding Interval_50365 chr14 12100304 12101219 + 0 NA intron (ENSMUSG00000021745.14, intron 2 of 3) protein_coding-intron (ENSMUSG00000021745.14, intron 6 of 29) 51823 ENSMUSG00000114246.1 ENSMUSG00000114246 ENSMUST00000225204 Gm48603 TEC Interval_61302 chr15 80698297 80698519 + 0 NA promoter-TSS (ENSMUSG00000116220.1) antisense-promoter-TSS (ENSMUSG00000116220.1) -798 ENSMUSG00000116220.1 ENSMUSG00000116220 ENSMUST00000230325 A430088P11Rik antisense Interval_49242 chr13 109769730 109770026 + 0 NA intron (ENSMUSG00000021699.17, intron 5 of 15) protein_coding-intron (ENSMUSG00000021699.17, intron 4 of 14) -133931 ENSMUSG00000084651.1 ENSMUSG00000084651 ENSMUST00000122702 Mir1904 miRNA Interval_6708 chr1 118904409 118905166 + 0 NA intron (ENSMUSG00000048402.14, intron 2 of 6) protein_coding-intron (ENSMUSG00000048402.14, intron 2 of 13) -49433 ENSMUSG00000098273.1 ENSMUSG00000098273 ENSMUST00000183982 Mir6346 miRNA Interval_144645 chr7 27310287 27311945 + 0 NA promoter-TSS (ENSMUSG00000040488.18) protein_coding-promoter-TSS (ENSMUSG00000040488.18) 22532 ENSMUSG00000040488.18 ENSMUSG00000040488 ENSMUST00000206413 Ltbp4 protein_coding Interval_147809 chr7 73682898 73683789 + 0 NA Intergenic Intergenic 3258 ENSMUSG00000108337.1 ENSMUSG00000108337 ENSMUST00000205991 Gm4971 processed_pseudogene Interval_52380 chr14 45483582 45484229 + 0 NA promoter-TSS (ENSMUSG00000037712.16) protein_coding-promoter-TSS (ENSMUSG00000037712.16) 64 ENSMUSG00000037712.16 ENSMUSG00000037712 ENSMUST00000149723 Fermt2 protein_coding Interval_62093 chr15 86463596 86463783 + 0 NA intron (ENSMUSG00000115918.1, intron 1 of 1) protein_coding-intron (ENSMUSG00000051864.10, intron 12 of 12) 11409 ENSMUSG00000115918.1 ENSMUSG00000115918 ENSMUST00000229685 A930001M01Rik antisense Interval_134498 chr6 29145701 29146023 + 0 NA intron (ENSMUSG00000029701.15, intron 1 of 4) protein_coding-intron (ENSMUSG00000029701.15, intron 9 of 18) 4817 ENSMUSG00000095596.1 ENSMUSG00000095596 ENSMUST00000178237 Gm24303 miRNA Interval_52725 chr14 49089519 49090324 + 0 NA exon (ENSMUSG00000036291.6, exon 8 of 8) protein_coding-exon (ENSMUSG00000036291.6, exon 8 of 8) -23268 ENSMUSG00000061244.14 ENSMUSG00000061244 ENSMUST00000160386 Exoc5 protein_coding Interval_14876 chr10 40701083 40701278 + 0 NA intron (ENSMUSG00000045555.3, intron 1 of 4) protein_coding-intron (ENSMUSG00000045555.3, intron 1 of 4) 17898 ENSMUSG00000045555.3 ENSMUSG00000045555 ENSMUST00000058747 Mettl24 protein_coding Interval_85005 chr19 21282615 21284060 + 0 NA exon (ENSMUSG00000024750.11, exon 6 of 6) protein_coding-exon (ENSMUSG00000024750.11, exon 6 of 6) 11059 ENSMUSG00000024750.11 ENSMUSG00000024750 ENSMUST00000133175 Zfand5 protein_coding Interval_112171 chr4 35155649 35157708 + 0 NA intron (ENSMUSG00000073910.10, intron 1 of 1) protein_coding-intron (ENSMUSG00000073910.10, intron 1 of 3) 806 ENSMUSG00000073910.10 ENSMUSG00000073910 ENSMUST00000155725 Mob3b protein_coding Interval_70904 chr17 15748096 15748936 + 0 NA intron (ENSMUSG00000023852.14, intron 6 of 10) protein_coding-intron (ENSMUSG00000023852.14, intron 19 of 35) 9981 ENSMUSG00000023852.14 ENSMUSG00000023852 ENSMUST00000173040 Chd1 protein_coding Interval_34801 chr12 11332275 11332620 + 0 NA intron (ENSMUSG00000054459.8, intron 2 of 3) protein_coding-intron (ENSMUSG00000054459.8, intron 2 of 3) 32560 ENSMUSG00000098879.1 ENSMUSG00000098879 ENSMUST00000184262 Mir7675 miRNA Interval_50119 chr14 8105597 8106054 + 0 NA intron (ENSMUSG00000033885.15, intron 1 of 2) protein_coding-intron (ENSMUSG00000033885.15, intron 1 of 17) 7602 ENSMUSG00000033885.15 ENSMUSG00000033885 ENSMUST00000224462 Pxk protein_coding Interval_33533 chr11 117078445 117078680 + 0 NA exon (ENSMUSG00000086859.4, exon 1 of 1) lincRNA-exon (ENSMUSG00000086859.4, exon 1 of 1) 1214 ENSMUSG00000104740.1 ENSMUSG00000104740 ENSMUST00000196236 Mir6516 miRNA Interval_38195 chr12 76305302 76305579 + 0 NA intron (ENSMUSG00000021048.7, intron 20 of 26) protein_coding-intron (ENSMUSG00000021048.7, intron 21 of 27) 1543 ENSMUSG00000112784.1 ENSMUSG00000112784 ENSMUST00000218341 Gm34868 antisense Interval_136456 chr6 54629350 54630516 + 0 NA exon (ENSMUSG00000005225.15, exon 11 of 14) protein_coding-exon (ENSMUSG00000005225.15, exon 11 of 14) 34822 ENSMUSG00000005225.15 ENSMUSG00000005225 ENSMUST00000101385 Plekha8 protein_coding Interval_152577 chr7 134760240 134760499 + 0 NA intron (ENSMUSG00000058325.6, intron 12 of 20) protein_coding-intron (ENSMUSG00000058325.6, intron 12 of 51) 89682 ENSMUSG00000058325.6 ENSMUSG00000058325 ENSMUST00000210121 Dock1 protein_coding Interval_34999 chr12 16554842 16556829 + 0 NA intron (ENSMUSG00000020593.16, intron 14 of 21) protein_coding-intron (ENSMUSG00000020593.16, intron 13 of 20) 55131 ENSMUSG00000020593.16 ENSMUSG00000020593 ENSMUST00000221146 Lpin1 protein_coding Interval_118568 chr4 132553918 132555921 + 0 NA Intergenic Intergenic -7712 ENSMUSG00000065623.1 ENSMUSG00000065623 ENSMUST00000083689 Gm24762 snRNA Interval_66023 chr16 31005571 31006326 + 0 NA intron (ENSMUSG00000047434.14, intron 3 of 3) protein_coding-intron (ENSMUSG00000047434.14, intron 3 of 3) -32430 ENSMUSG00000087605.1 ENSMUSG00000087605 ENSMUST00000123905 Gm15742 sense_intronic Interval_166703 chr9 62133113 62133961 + 0 NA Intergenic Intergenic -10943 ENSMUSG00000092696.1 ENSMUSG00000092696 ENSMUST00000174955 Mir5133 miRNA Interval_27402 chr11 67369448 67369746 + 0 NA TTS (ENSMUSG00000060180.12) protein_coding-TTS (ENSMUSG00000060180.12) 4812 ENSMUSG00000060180.12 ENSMUSG00000060180 ENSMUST00000181027 Myh13 protein_coding Interval_83882 chr19 5328222 5328654 + 0 NA Intergenic Intergenic 4424 ENSMUSG00000117807.1 ENSMUSG00000117807 ENSMUST00000235792 Gm7074 processed_pseudogene Interval_16063 chr10 60442627 60443598 + 0 NA intron (ENSMUSG00000012819.15, intron 12 of 65) protein_coding-intron (ENSMUSG00000012819.15, intron 12 of 66) 43208 ENSMUSG00000090439.3 ENSMUSG00000090439 ENSMUST00000218360 Gm17455 protein_coding Interval_134267 chr6 24275971 24276334 + 0 NA Intergenic Intergenic 132784 ENSMUSG00000096522.1 ENSMUSG00000096522 ENSMUST00000178407 Gm26386 miRNA Interval_62526 chr15 94342514 94342977 + 0 NA intron (ENSMUSG00000022449.14, intron 15 of 27) protein_coding-intron (ENSMUSG00000022449.14, intron 15 of 38) 61513 ENSMUSG00000022449.14 ENSMUSG00000022449 ENSMUST00000128797 Adamts20 protein_coding Interval_140019 chr6 113457041 113457269 + 0 NA Intergenic Intergenic -9205 ENSMUSG00000043088.16 ENSMUSG00000043088 ENSMUST00000205211 Il17re protein_coding Interval_9313 chr1 156093603 156094664 + 0 NA intron (ENSMUSG00000015484.3, intron 1 of 4) protein_coding-intron (ENSMUSG00000015484.3, intron 1 of 4) 58361 ENSMUSG00000050565.16 ENSMUSG00000050565 ENSMUST00000125371 Tor1aip2 protein_coding Interval_9099 chr1 153577859 153578782 + 0 NA Intergenic Intergenic -28609 ENSMUSG00000042684.8 ENSMUSG00000042684 ENSMUST00000187747 Npl protein_coding Interval_46898 chr13 73273236 73273543 + 0 NA exon (ENSMUSG00000113485.1, exon 1 of 1) TEC-exon (ENSMUSG00000113485.1, exon 1 of 1) 159 ENSMUSG00000113485.1 ENSMUSG00000113485 ENSMUST00000223190 Gm48000 TEC Interval_30500 chr11 94773650 94774258 + 0 NA Intergenic Intergenic 8546 ENSMUSG00000075610.9 ENSMUSG00000075610 ENSMUST00000162809 Tmem92 protein_coding Interval_41257 chr12 112180271 112180473 + 0 NA intron (ENSMUSG00000021294.7, intron 2 of 2) protein_coding-intron (ENSMUSG00000021294.7, intron 15 of 15) 1218 ENSMUSG00000021294.7 ENSMUSG00000021294 ENSMUST00000183816 Kif26a protein_coding Interval_149170 chr7 95809390 95810397 + 0 NA Intergenic Intergenic 103493 ENSMUSG00000108628.1 ENSMUSG00000108628 ENSMUST00000205327 Gm5037 processed_pseudogene Interval_9138 chr1 153962340 153962570 + 0 NA Intergenic Intergenic 23229 ENSMUSG00000100014.1 ENSMUSG00000100014 ENSMUST00000185385 Gm29290 lincRNA Interval_54891 chr14 76031290 76031507 + 0 NA Intergenic Intergenic -20533 ENSMUSG00000067995.4 ENSMUSG00000067995 ENSMUST00000088922 Gtf2f2 protein_coding Interval_164728 chr9 40834365 40834898 + 0 NA Intergenic Intergenic 13662 ENSMUSG00000110982.1 ENSMUSG00000110982 ENSMUST00000215895 Gm48565 TEC Interval_30501 chr11 94785170 94786766 + 0 NA Intergenic Intergenic -3468 ENSMUSG00000075610.9 ENSMUSG00000075610 ENSMUST00000162809 Tmem92 protein_coding Interval_55600 chr14 94842150 94842708 + 0 NA Intergenic Intergenic -87272 ENSMUSG00000089384.1 ENSMUSG00000089384 ENSMUST00000158759 Gm24680 snoRNA Interval_149797 chr7 101623247 101624459 + 0 NA Intergenic Intergenic -38253 ENSMUSG00000030651.5 ENSMUSG00000030651 ENSMUST00000063920 Art2b protein_coding Interval_62193 chr15 88720129 88720379 + 0 NA intron (ENSMUSG00000022387.17, intron 2 of 12) protein_coding-intron (ENSMUSG00000022387.17, intron 2 of 7) -1099 ENSMUSG00000022387.17 ENSMUSG00000022387 ENSMUST00000139515 Brd1 protein_coding Interval_73627 chr17 41546950 41547322 + 0 NA Intergenic Intergenic 116552 ENSMUSG00000117001.1 ENSMUSG00000117001 ENSMUST00000232972 Gm49858 processed_pseudogene Interval_55457 chr14 87502084 87502290 + 0 NA intron (ENSMUSG00000022019.16, intron 10 of 13) protein_coding-intron (ENSMUSG00000022019.16, intron 10 of 13) 9234 ENSMUSG00000115184.1 ENSMUSG00000115184 ENSMUST00000226795 Gm49197 TEC Interval_90805 chr2 32700841 32701202 + 0 NA intron (ENSMUSG00000009566.12, intron 2 of 9) protein_coding-intron (ENSMUSG00000009566.12, intron 2 of 8) 11232 ENSMUSG00000009555.16 ENSMUSG00000009555 ENSMUST00000155205 Cdk9 protein_coding Interval_115536 chr4 100394647 100394862 + 0 NA intron (ENSMUSG00000035305.5, intron 4 of 8) protein_coding-intron (ENSMUSG00000035305.5, intron 4 of 8) -32695 ENSMUSG00000080967.1 ENSMUSG00000080967 ENSMUST00000121588 Gm12706 processed_pseudogene Interval_125856 chr5 75074921 75076828 + 0 NA exon (ENSMUSG00000035946.7, exon 1 of 2) protein_coding-exon (ENSMUSG00000035946.7, exon 1 of 2) 272 ENSMUSG00000035946.7 ENSMUSG00000035946 ENSMUST00000160104 Gsx2 protein_coding Interval_158340 chr8 81960459 81961517 + 0 NA intron (ENSMUSG00000037940.17, intron 13 of 24) protein_coding-intron (ENSMUSG00000037940.17, intron 11 of 22) 133290 ENSMUSG00000091998.2 ENSMUSG00000091998 ENSMUST00000166673 Gm17072 processed_pseudogene Interval_149439 chr7 98534367 98534558 + 0 NA Intergenic Intergenic 27508 ENSMUSG00000065803.1 ENSMUSG00000065803 ENSMUST00000083869 Gm23040 snRNA Interval_167578 chr9 70598737 70600363 + 0 NA exon (ENSMUSG00000042444.10, exon 9 of 9) protein_coding-exon (ENSMUSG00000042444.10, exon 9 of 9) 56670 ENSMUSG00000032212.10 ENSMUSG00000032212 ENSMUST00000216881 Sltm protein_coding Interval_161731 chr8 122397336 122398896 + 0 NA intron (ENSMUSG00000017478.15, intron 5 of 17) protein_coding-intron (ENSMUSG00000017478.15, intron 5 of 18) 21468 ENSMUSG00000017478.15 ENSMUSG00000017478 ENSMUST00000177049 Zc3h18 protein_coding Interval_9482 chr1 157543187 157543570 + 0 NA intron (ENSMUSG00000026589.14, intron 1 of 1) protein_coding-intron (ENSMUSG00000026589.14, intron 11 of 26) 5327 ENSMUSG00000026589.14 ENSMUSG00000026589 ENSMUST00000155665 Sec16b protein_coding Interval_94205 chr2 85084953 85086537 + 0 NA intron (ENSMUSG00000086969.1, intron 1 of 2) processed_transcript-intron (ENSMUSG00000086969.1, intron 1 of 2) 716 ENSMUSG00000086969.1 ENSMUSG00000086969 ENSMUST00000135659 4930443O20Rik processed_transcript Interval_115771 chr4 103795421 103796607 + 0 NA intron (ENSMUSG00000028519.16, intron 1 of 3) protein_coding-intron (ENSMUSG00000028519.16, intron 1 of 9) 143527 ENSMUSG00000080913.1 ENSMUSG00000080913 ENSMUST00000118859 Gm12719 processed_pseudogene Interval_98542 chr2 153107105 153109091 + 0 NA promoter-TSS (ENSMUSG00000003283.15) protein_coding-promoter-TSS (ENSMUSG00000003283.15) -370 ENSMUSG00000003283.15 ENSMUSG00000003283 ENSMUST00000003370 Hck protein_coding Interval_37482 chr12 69278386 69278578 + 0 NA intron (ENSMUSG00000051890.13, intron 13 of 13) protein_coding-intron (ENSMUSG00000051890.13, intron 12 of 12) -5050 ENSMUSG00000085539.1 ENSMUSG00000085539 ENSMUST00000124326 Gm15561 antisense Interval_143714 chr7 15887533 15888638 + 0 NA intron (ENSMUSG00000074365.13, intron 2 of 4) protein_coding-intron (ENSMUSG00000074365.13, intron 2 of 4) -8213 ENSMUSG00000041578.15 ENSMUSG00000041578 ENSMUST00000132563 Crx protein_coding Interval_99036 chr2 156786307 156787208 + 0 NA Intergenic Intergenic 3646 ENSMUSG00000082196.3 ENSMUSG00000082196 ENSMUST00000120090 Gm14231 processed_pseudogene Interval_79743 chr18 34840128 34841929 + 0 NA intron (ENSMUSG00000038555.7, intron 1 of 7) protein_coding-intron (ENSMUSG00000038555.7, intron 1 of 7) 439 ENSMUSG00000038555.7 ENSMUSG00000038555 ENSMUST00000043484 Reep2 protein_coding Interval_174363 chrX 150146436 150147725 + 0 NA Intergenic Intergenic 63551 ENSMUSG00000094767.1 ENSMUSG00000094767 ENSMUST00000118183 Gm8402 processed_pseudogene Interval_8095 chr1 135700514 135701421 + 0 NA Intergenic Intergenic -19094 ENSMUSG00000026421.14 ENSMUSG00000026421 ENSMUST00000027677 Csrp1 protein_coding Interval_107614 chr3 108887360 108887586 + 0 NA intron (ENSMUSG00000045326.13, intron 1 of 12) protein_coding-intron (ENSMUSG00000045326.13, intron 2 of 11) 2233 ENSMUSG00000045326.13 ENSMUSG00000045326 ENSMUST00000139137 Fndc7 protein_coding Interval_108710 chr3 130600775 130601969 + 0 NA Intergenic Intergenic 9251 ENSMUSG00000105520.1 ENSMUSG00000105520 ENSMUST00000197071 Gm42837 TEC Interval_37136 chr12 58827978 58828182 + 0 NA Intergenic Intergenic 14197 ENSMUSG00000112785.1 ENSMUSG00000112785 ENSMUST00000220177 Gm47645 lincRNA Interval_107143 chr3 103881079 103881400 + 0 NA intron (ENSMUSG00000027843.13, intron 12 of 22) protein_coding-intron (ENSMUSG00000027843.13, intron 10 of 20) -4833 ENSMUSG00000027843.13 ENSMUSG00000027843 ENSMUST00000126548 Ptpn22 protein_coding Interval_38829 chr12 83066499 83067218 + 0 NA TTS (ENSMUSG00000021219.16) protein_coding-TTS (ENSMUSG00000021219.16) 32016 ENSMUSG00000102029.1 ENSMUSG00000102029 ENSMUST00000187556 Gm29530 antisense Interval_3452 chr1 58466549 58466894 + 0 NA promoter-TSS (ENSMUSG00000094245.1) snRNA-promoter-TSS (ENSMUSG00000094245.1) -100 ENSMUSG00000094245.1 ENSMUSG00000094245 ENSMUST00000179823 Gm23966 snRNA Interval_66869 chr16 38204906 38205718 + 0 NA intron (ENSMUSG00000022812.14, intron 6 of 6) protein_coding-intron (ENSMUSG00000022812.14, intron 7 of 10) 2279 ENSMUSG00000098908.1 ENSMUSG00000098908 ENSMUST00000184976 Gm27931 snoRNA Interval_23544 chr11 23283257 23284105 + 0 NA promoter-TSS (ENSMUSG00000020290.14) protein_coding-promoter-TSS (ENSMUSG00000020290.14) -963 ENSMUSG00000020290.14 ENSMUSG00000020290 ENSMUST00000150750 Xpo1 protein_coding Interval_172524 chrX 23953871 23955121 + 0 NA Intergenic Intergenic 4438 ENSMUSG00000090102.1 ENSMUSG00000090102 ENSMUST00000118300 Gm4985 protein_coding Interval_106206 chr3 94608767 94609082 + 0 NA Intergenic Intergenic -4140 ENSMUSG00000062896.3 ENSMUSG00000062896 ENSMUST00000119898 Rpl31-ps11 processed_pseudogene Interval_94396 chr2 90731413 90732985 + 0 NA promoter-TSS (ENSMUSG00000051329.13) protein_coding-promoter-TSS (ENSMUSG00000051329.13) -13171 ENSMUSG00000008200.15 ENSMUSG00000008200 ENSMUST00000123955 Fnbp4 protein_coding Interval_30083 chr11 89059944 89061214 + 0 NA exon (ENSMUSG00000000276.11, exon 1 of 11) protein_coding-exon (ENSMUSG00000000276.11, exon 1 of 11) 169 ENSMUSG00000000276.11 ENSMUSG00000000276 ENSMUST00000152772 Dgke protein_coding Interval_21590 chr10 130363247 130364048 + 0 NA intron (ENSMUSG00000034833.10, intron 9 of 9) protein_coding-intron (ENSMUSG00000034833.10, intron 9 of 9) 30685 ENSMUSG00000070601.5 ENSMUSG00000070601 ENSMUST00000233031 Vmn2r84 protein_coding Interval_114937 chr4 87320633 87320815 + 0 NA Intergenic Intergenic 22362 ENSMUSG00000086512.1 ENSMUSG00000086512 ENSMUST00000146704 Gm12600 lincRNA Interval_63748 chr15 103223922 103225034 + 0 NA intron (ENSMUSG00000009575.14, intron 1 of 4) protein_coding-intron (ENSMUSG00000009575.14, intron 1 of 4) -9112 ENSMUSG00000009575.14 ENSMUSG00000009575 ENSMUST00000127191 Cbx5 protein_coding Interval_124324 chr5 43947546 43949169 + 0 NA exon (ENSMUSG00000105831.1, exon 1 of 1) TEC-exon (ENSMUSG00000105831.1, exon 1 of 1) 241 ENSMUSG00000106573.1 ENSMUSG00000106573 ENSMUST00000200632 Gm43183 TEC Interval_108865 chr3 132828605 132830011 + 0 NA intron (ENSMUSG00000028030.12, intron 3 of 3) protein_coding-intron (ENSMUSG00000028030.12, intron 25 of 25) -13088 ENSMUSG00000106499.1 ENSMUSG00000106499 ENSMUST00000196299 Gm9403 processed_pseudogene Interval_170794 chr9 110832921 110833547 + 0 NA Intergenic Intergenic -1354 ENSMUSG00000047257.13 ENSMUSG00000047257 ENSMUST00000146794 Prss45 protein_coding Interval_93626 chr2 75101252 75102168 + 0 NA Intergenic Intergenic 36088 ENSMUSG00000087333.1 ENSMUSG00000087333 ENSMUST00000143898 Gm13652 lincRNA Interval_168432 chr9 80256129 80256377 + 0 NA intron (ENSMUSG00000033577.18, intron 11 of 35) protein_coding-intron (ENSMUSG00000033577.18, intron 11 of 32) 9197 ENSMUSG00000099016.1 ENSMUSG00000099016 ENSMUST00000183413 Gm27227 antisense Interval_12906 chr10 7914830 7915043 + 0 NA intron (ENSMUSG00000015755.16, intron 4 of 4) protein_coding-intron (ENSMUSG00000015755.16, intron 3 of 6) 40957 ENSMUSG00000015755.16 ENSMUSG00000015755 ENSMUST00000130322 Tab2 protein_coding Interval_127316 chr5 102703258 102703484 + 0 NA intron (ENSMUSG00000057315.14, intron 2 of 8) protein_coding-intron (ENSMUSG00000057315.14, intron 2 of 8) -105678 ENSMUSG00000057315.14 ENSMUSG00000057315 ENSMUST00000070000 Arhgap24 protein_coding Interval_45556 chr13 55830245 55832005 + 0 NA exon (ENSMUSG00000021506.7, exon 1 of 3) protein_coding-exon (ENSMUSG00000021506.7, exon 1 of 3) 4875 ENSMUSG00000114493.2 ENSMUSG00000114493 ENSMUST00000225993 Gm47071 antisense Interval_132812 chr5 148026408 148028793 + 0 NA intron (ENSMUSG00000029651.16, intron 1 of 14) protein_coding-intron (ENSMUSG00000029651.16, intron 1 of 14) -70434 ENSMUSG00000085565.1 ENSMUSG00000085565 ENSMUST00000138406 Gm15721 lincRNA Interval_67581 chr16 51315954 51316303 + 0 NA Intergenic Intergenic 47704 ENSMUSG00000081453.1 ENSMUSG00000081453 ENSMUST00000118650 Gm6767 processed_pseudogene Interval_152363 chr7 132403486 132404487 + 0 NA intron (ENSMUSG00000030849.18, intron 2 of 6) protein_coding-intron (ENSMUSG00000030849.18, intron 2 of 6) -16044 ENSMUSG00000108870.1 ENSMUSG00000108870 ENSMUST00000207259 Gm44893 lincRNA Interval_123351 chr5 31628205 31628507 + 0 NA intron (ENSMUSG00000029136.9, intron 7 of 7) protein_coding-intron (ENSMUSG00000029136.9, intron 7 of 7) 14384 ENSMUSG00000105617.4 ENSMUSG00000105617 ENSMUST00000202033 Gm43809 processed_transcript Interval_151977 chr7 127917352 127919757 + 0 NA intron (ENSMUSG00000030801.10, intron 3 of 4) protein_coding-intron (ENSMUSG00000030801.10, intron 3 of 10) -1234 ENSMUSG00000030801.10 ENSMUSG00000030801 ENSMUST00000206364 Kat8 protein_coding Interval_139053 chr6 94605948 94607138 + 0 NA promoter-TSS (ENSMUSG00000098531.1) miRNA-promoter-TSS (ENSMUSG00000098531.1) -128 ENSMUSG00000098531.1 ENSMUSG00000098531 ENSMUST00000183891 Mir7041 miRNA Interval_38030 chr12 74271067 74271457 + 0 NA exon (ENSMUSG00000044912.11, exon 7 of 7) protein_coding-exon (ENSMUSG00000044912.11, exon 7 of 7) -13019 ENSMUSG00000071265.10 ENSMUSG00000071265 ENSMUST00000185822 1700086L19Rik transcribed_unitary_pseudogene Interval_128884 chr5 115878732 115879209 + 0 NA intron (ENSMUSG00000029516.19, intron 7 of 10) protein_coding-intron (ENSMUSG00000029516.19, intron 6 of 46) -7448 ENSMUSG00000029516.19 ENSMUSG00000029516 ENSMUST00000134609 Cit protein_coding Interval_12693 chr10 4354428 4355562 + 0 NA exon (ENSMUSG00000038587.10, exon 3 of 4) protein_coding-exon (ENSMUSG00000038587.10, exon 3 of 4) 18880 ENSMUSG00000075327.10 ENSMUSG00000075327 ENSMUST00000215860 Zbtb2 protein_coding Interval_1302 chr1 19441270 19441748 + 0 NA Intergenic Intergenic 72410 ENSMUSG00000084668.1 ENSMUSG00000084668 ENSMUST00000122719 Gm24633 snoRNA Interval_66364 chr16 33418796 33419810 + 0 NA intron (ENSMUSG00000022811.17, intron 1 of 8) protein_coding-intron (ENSMUSG00000022811.17, intron 1 of 8) 38440 ENSMUSG00000022811.17 ENSMUSG00000022811 ENSMUST00000089677 Zfp148 protein_coding Interval_143720 chr7 15914205 15914650 + 0 NA Intergenic Intergenic 7739 ENSMUSG00000106050.1 ENSMUSG00000106050 ENSMUST00000197717 Ass-ps1 processed_pseudogene Interval_125998 chr5 76747848 76748247 + 0 NA intron (ENSMUSG00000036377.19, intron 1 of 11) protein_coding-intron (ENSMUSG00000036377.19, intron 1 of 4) -5534 ENSMUSG00000083874.1 ENSMUSG00000083874 ENSMUST00000121248 Gm7494 processed_pseudogene Interval_154476 chr8 18561834 18563489 + 0 NA Intergenic Intergenic -32915 ENSMUSG00000039842.15 ENSMUSG00000039842 ENSMUST00000141244 Mcph1 protein_coding Interval_36982 chr12 55871602 55872123 + 0 NA Intergenic Intergenic 35458 ENSMUSG00000012076.8 ENSMUSG00000012076 ENSMUST00000219575 Brms1l protein_coding Interval_162962 chr9 13790840 13791747 + 0 NA intron (ENSMUSG00000031918.16, intron 6 of 15) protein_coding-intron (ENSMUSG00000031918.16, intron 5 of 14) 27616 ENSMUSG00000031922.12 ENSMUSG00000031922 ENSMUST00000124524 Cep57 protein_coding Interval_18892 chr10 92660908 92661670 + 0 NA Intergenic Intergenic 17198 ENSMUSG00000111470.1 ENSMUSG00000111470 ENSMUST00000216096 Gm31822 lincRNA Interval_99527 chr2 162968236 162968974 + 0 NA intron (ENSMUSG00000035576.13, intron 19 of 20) protein_coding-intron (ENSMUSG00000035576.13, intron 20 of 22) 14656 ENSMUSG00000080962.1 ENSMUSG00000080962 ENSMUST00000117318 Gm11453 processed_pseudogene Interval_140642 chr6 120274190 120276022 + 0 NA intron (ENSMUSG00000041372.10, intron 1 of 19) protein_coding-intron (ENSMUSG00000041372.10, intron 1 of 19) 19453 ENSMUSG00000041372.10 ENSMUSG00000041372 ENSMUST00000212457 B4galnt3 protein_coding Interval_52739 chr14 49234711 49235788 + 0 NA intron (ENSMUSG00000021850.14, intron 4 of 6) protein_coding-intron (ENSMUSG00000021850.14, intron 3 of 6) 10179 ENSMUSG00000021850.14 ENSMUSG00000021850 ENSMUST00000130853 ccdc198 protein_coding Interval_45587 chr13 56090045 56091519 + 0 NA promoter-TSS (ENSMUSG00000015937.15) protein_coding-promoter-TSS (ENSMUSG00000015937.15) 45579 ENSMUSG00000015937.15 ENSMUSG00000015937 ENSMUST00000154564 Macroh2a1 protein_coding Interval_57230 chr15 8010489 8010967 + 0 NA intron (ENSMUSG00000039828.7, intron 9 of 17) protein_coding-intron (ENSMUSG00000039828.7, intron 9 of 17) 35400 ENSMUSG00000098281.1 ENSMUSG00000098281 ENSMUST00000184975 Gm27529 miRNA Interval_109130 chr3 136118481 136118769 + 0 NA intron (ENSMUSG00000104710.1, intron 2 of 3) protein_coding-intron (ENSMUSG00000037922.13, intron 7 of 16) -62522 ENSMUSG00000037922.13 ENSMUSG00000037922 ENSMUST00000198034 Bank1 protein_coding Interval_92780 chr2 65395603 65396991 + 0 NA Intergenic Intergenic -20015 ENSMUSG00000088197.1 ENSMUSG00000088197 ENSMUST00000157572 Gm24138 snoRNA Interval_86114 chr19 36833092 36835068 + 0 NA promoter-TSS (ENSMUSG00000024811.11) protein_coding-promoter-TSS (ENSMUSG00000024811.11) -15291 ENSMUSG00000024811.11 ENSMUSG00000024811 ENSMUST00000168654 Tnks2 protein_coding Interval_62565 chr15 94673684 94673959 + 0 NA intron (ENSMUSG00000063296.5, intron 2 of 2) protein_coding-intron (ENSMUSG00000063296.5, intron 2 of 7) 7565 ENSMUSG00000095169.1 ENSMUSG00000095169 ENSMUST00000103977 Gm25546 snoRNA Interval_34638 chr12 8273449 8274236 + 0 NA intron (ENSMUSG00000037669.15, intron 1 of 1) protein_coding-intron (ENSMUSG00000037669.15, intron 5 of 6) 19852 ENSMUSG00000112441.1 ENSMUSG00000112441 ENSMUST00000217967 Gm48898 lincRNA Interval_32182 chr11 105972476 105972701 + 0 NA intron (ENSMUSG00000085297.1, intron 1 of 2) protein_coding-intron (ENSMUSG00000020681.14, intron 7 of 24) -4017 ENSMUSG00000020681.14 ENSMUSG00000020681 ENSMUST00000151657 Ace protein_coding Interval_83121 chr18 81627133 81627419 + 0 NA TTS (ENSMUSG00000117870.1) lincRNA-TTS (ENSMUSG00000117870.1) 10471 ENSMUSG00000117870.1 ENSMUSG00000117870 ENSMUST00000236490 Gm41792 lincRNA Interval_64954 chr16 17496109 17496418 + 0 NA intron (ENSMUSG00000022763.18, intron 3 of 16) protein_coding-intron (ENSMUSG00000022763.18, intron 3 of 20) -6629 ENSMUSG00000022763.18 ENSMUSG00000022763 ENSMUST00000232421 Aifm3 protein_coding Interval_9356 chr1 156558139 156559824 + 0 NA promoter-TSS (ENSMUSG00000026596.13) protein_coding-promoter-TSS (ENSMUSG00000026596.13) -24127 ENSMUSG00000104293.1 ENSMUSG00000104293 ENSMUST00000195501 Gm38043 TEC Interval_121665 chr5 4804146 4804653 + 0 NA exon (ENSMUSG00000028926.15, exon 15 of 15) protein_coding-exon (ENSMUSG00000028926.15, exon 15 of 15) 1942 ENSMUSG00000104656.1 ENSMUSG00000104656 ENSMUST00000197203 Gm44483 miRNA Interval_144793 chr7 28298633 28299492 + 0 NA exon (ENSMUSG00000003436.11, exon 4 of 9) protein_coding-exon (ENSMUSG00000003436.11, exon 4 of 9) 2710 ENSMUSG00000003436.11 ENSMUSG00000003436 ENSMUST00000145512 Dll3 protein_coding Interval_136692 chr6 57809088 57809332 + 0 NA intron (ENSMUSG00000037788.14, intron 1 of 5) protein_coding-intron (ENSMUSG00000037788.14, intron 1 of 4) 15940 ENSMUSG00000037788.14 ENSMUSG00000037788 ENSMUST00000143953 Vopp1 protein_coding Interval_47727 chr13 91882022 91883352 + 0 NA exon (ENSMUSG00000021708.17, exon 15 of 15) protein_coding-exon (ENSMUSG00000021708.17, exon 15 of 15) -5802 ENSMUSG00000021622.3 ENSMUSG00000021622 ENSMUST00000022122 Ckmt2 protein_coding Interval_117403 chr4 123523295 123523731 + 0 NA intron (ENSMUSG00000028649.21, intron 5 of 9) protein_coding-intron (ENSMUSG00000028649.21, intron 5 of 92) 33282 ENSMUSG00000089588.1 ENSMUSG00000089588 ENSMUST00000158963 Gm23548 misc_RNA Interval_67244 chr16 44729591 44729863 + 0 NA intron (ENSMUSG00000036208.13, intron 3 of 7) protein_coding-intron (ENSMUSG00000036208.13, intron 4 of 8) 5370 ENSMUSG00000036208.13 ENSMUSG00000036208 ENSMUST00000132610 Nepro protein_coding Interval_71332 chr17 22352972 22353255 + 0 NA intron (ENSMUSG00000033972.9, intron 3 of 5) protein_coding-intron (ENSMUSG00000033972.9, intron 3 of 5) 8287 ENSMUSG00000033972.9 ENSMUSG00000033972 ENSMUST00000115535 Zfp944 protein_coding Interval_145336 chr7 34035496 34036874 + 0 NA TTS (ENSMUSG00000083434.1) processed_pseudogene-TTS (ENSMUSG00000083434.1) 1247 ENSMUSG00000083434.1 ENSMUSG00000083434 ENSMUST00000117861 Gm12760 processed_pseudogene Interval_51589 chr14 30548646 30550068 + 0 NA promoter-TSS (ENSMUSG00000021957.7) protein_coding-promoter-TSS (ENSMUSG00000021957.7) -8252 ENSMUSG00000021957.7 ENSMUSG00000021957 ENSMUST00000160406 Tkt protein_coding Interval_23165 chr11 20262830 20263282 + 0 NA Intergenic Intergenic -13627 ENSMUSG00000044066.14 ENSMUSG00000044066 ENSMUST00000161218 Cep68 protein_coding Interval_157294 chr8 69095432 69095702 + 0 NA intron (ENSMUSG00000006273.14, intron 1 of 3) protein_coding-intron (ENSMUSG00000006273.14, intron 1 of 13) -6332 ENSMUSG00000036330.12 ENSMUSG00000036330 ENSMUST00000142710 Slc18a1 protein_coding Interval_158240 chr8 80345550 80346506 + 0 NA Intergenic Intergenic -147753 ENSMUSG00000051839.7 ENSMUSG00000051839 ENSMUST00000063359 Gypa protein_coding Interval_122778 chr5 25370279 25370494 + 0 NA exon (ENSMUSG00000106457.1, exon 1 of 1) TEC-exon (ENSMUSG00000106457.1, exon 1 of 1) 1366 ENSMUSG00000106457.1 ENSMUSG00000106457 ENSMUST00000198731 Gm42585 TEC Interval_166528 chr9 60610948 60611292 + 0 NA intron (ENSMUSG00000047766.15, intron 11 of 16) protein_coding-intron (ENSMUSG00000047766.15, intron 3 of 9) 62925 ENSMUSG00000111512.1 ENSMUSG00000111512 ENSMUST00000215435 Gm17853 processed_pseudogene Interval_25597 chr11 50113974 50115079 + 0 NA intron (ENSMUSG00000020376.17, intron 7 of 7) protein_coding-intron (ENSMUSG00000020376.17, intron 7 of 7) 13392 ENSMUSG00000084302.1 ENSMUSG00000084302 ENSMUST00000117756 Gm12194 processed_pseudogene Interval_113107 chr4 48314650 48314884 + 0 NA intron (ENSMUSG00000028344.12, intron 3 of 13) protein_coding-intron (ENSMUSG00000028344.12, intron 3 of 16) 30463 ENSMUSG00000081953.1 ENSMUSG00000081953 ENSMUST00000118949 Gm12435 processed_pseudogene Interval_23736 chr11 25643287 25643463 + 0 NA intron (ENSMUSG00000032985.15, intron 2 of 2) protein_coding-intron (ENSMUSG00000032985.15, intron 6 of 6) -41765 ENSMUSG00000064761.1 ENSMUSG00000064761 ENSMUST00000082827 Gm23514 snoRNA Interval_4152 chr1 70863260 70864343 + 0 NA intron (ENSMUSG00000045648.15, intron 5 of 5) protein_coding-intron (ENSMUSG00000045648.15, intron 3 of 3) 137878 ENSMUSG00000045648.15 ENSMUSG00000045648 ENSMUST00000162182 Vwc2l protein_coding Interval_158776 chr8 86361666 86361933 + 0 NA Intergenic Intergenic 69298 ENSMUSG00000065737.1 ENSMUSG00000065737 ENSMUST00000083803 Gm24490 snRNA Interval_130070 chr5 124066746 124067109 + 0 NA intron (ENSMUSG00000029408.13, intron 11 of 11) protein_coding-intron (ENSMUSG00000029408.13, intron 11 of 11) 12204 ENSMUSG00000029408.13 ENSMUSG00000029408 ENSMUST00000126970 Abcb9 protein_coding Interval_79933 chr18 36039180 36039776 + 0 NA intron (ENSMUSG00000060275.14, intron 1 of 3) protein_coding-intron (ENSMUSG00000060275.14, intron 4 of 7) 29147 ENSMUSG00000060275.14 ENSMUSG00000060275 ENSMUST00000115705 Nrg2 protein_coding Interval_22726 chr11 14032176 14033036 + 0 NA Intergenic Intergenic -129473 ENSMUSG00000081631.1 ENSMUSG00000081631 ENSMUST00000121451 Gm12005 processed_pseudogene Interval_152752 chr7 137198346 137198646 + 0 NA promoter-TSS (ENSMUSG00000109847.1) antisense-promoter-TSS (ENSMUSG00000109847.1) 8 ENSMUSG00000109847.1 ENSMUSG00000109847 ENSMUST00000209650 Gm45278 antisense Interval_9590 chr1 159885958 159886156 + 0 NA exon (ENSMUSG00000015829.13, exon 10 of 22) protein_coding-exon (ENSMUSG00000015829.13, exon 10 of 22) 45669 ENSMUSG00000103719.1 ENSMUSG00000103719 ENSMUST00000195328 Gm38039 antisense Interval_172637 chrX 38737812 38738121 + 0 NA promoter-TSS (ENSMUSG00000085635.1) lincRNA-promoter-TSS (ENSMUSG00000085635.1) -204 ENSMUSG00000085635.1 ENSMUSG00000085635 ENSMUST00000140021 Gm14565 lincRNA Interval_77960 chr18 6146946 6147553 + 0 NA Intergenic Intergenic -35269 ENSMUSG00000041225.16 ENSMUSG00000041225 ENSMUST00000182572 Arhgap12 protein_coding Interval_45722 chr13 57278737 57278991 + 0 NA Intergenic Intergenic 2186 ENSMUSG00000114411.1 ENSMUSG00000114411 ENSMUST00000224461 Gm48176 processed_pseudogene Interval_50815 chr14 19991856 19992041 + 0 NA Intergenic Intergenic -14764 ENSMUSG00000043004.13 ENSMUSG00000043004 ENSMUST00000161247 Gng2 protein_coding Interval_92723 chr2 64228082 64228386 + 0 NA Intergenic Intergenic -130224 ENSMUSG00000075324.13 ENSMUSG00000075324 ENSMUST00000153538 Fign protein_coding Interval_99662 chr2 164036234 164036932 + 0 NA promoter-TSS (ENSMUSG00000054582.4) protein_coding-promoter-TSS (ENSMUSG00000054582.4) -417 ENSMUSG00000054582.4 ENSMUSG00000054582 ENSMUST00000150523 Pabpc1l protein_coding Interval_92942 chr2 68873653 68874822 + 0 NA intron (ENSMUSG00000027035.10, intron 1 of 10) protein_coding-intron (ENSMUSG00000027035.10, intron 1 of 9) 12795 ENSMUSG00000027035.10 ENSMUSG00000027035 ENSMUST00000141498 Cers6 protein_coding Interval_146748 chr7 49908119 49909418 + 0 NA Intergenic Intergenic -1531 ENSMUSG00000039728.15 ENSMUSG00000039728 ENSMUST00000107605 Slc6a5 protein_coding Interval_75466 chr17 66771151 66771493 + 0 NA intron (ENSMUSG00000033278.10, intron 6 of 6) protein_coding-intron (ENSMUSG00000033278.10, intron 19 of 32) -7559 ENSMUSG00000117174.1 ENSMUSG00000117174 ENSMUST00000233342 Gm49939 processed_pseudogene Interval_8830 chr1 151426978 151429176 + 0 NA promoter-TSS (ENSMUSG00000053286.11) protein_coding-promoter-TSS (ENSMUSG00000053286.11) -629 ENSMUSG00000053286.11 ENSMUSG00000053286 ENSMUST00000189655 Trmt1l protein_coding Interval_128718 chr5 114906082 114907483 + 0 NA TTS (ENSMUSG00000029561.17) protein_coding-TTS (ENSMUSG00000029561.17) 9250 ENSMUSG00000029561.17 ENSMUSG00000029561 ENSMUST00000129707 Oasl2 protein_coding Interval_88965 chr2 13697392 13698190 + 0 NA intron (ENSMUSG00000003418.11, intron 3 of 7) protein_coding-intron (ENSMUSG00000003418.11, intron 3 of 7) 25275 ENSMUSG00000104354.1 ENSMUSG00000104354 ENSMUST00000195289 Gm37126 antisense Interval_52258 chr14 41087474 41087797 + 0 NA intron (ENSMUSG00000021790.12, intron 6 of 6) protein_coding-intron (ENSMUSG00000021790.12, intron 6 of 7) 14724 ENSMUSG00000021790.12 ENSMUSG00000021790 ENSMUST00000161837 Dydc1 protein_coding Interval_96118 chr2 119880368 119880903 + 0 NA Intergenic Intergenic -2232 ENSMUSG00000081056.1 ENSMUSG00000081056 ENSMUST00000120952 Gm13998 processed_pseudogene Interval_1374 chr1 21076042 21076406 + 0 NA intron (ENSMUSG00000041779.5, intron 1 of 10) protein_coding-intron (ENSMUSG00000041779.5, intron 1 of 10) -3890 ENSMUSG00000099971.1 ENSMUSG00000099971 ENSMUST00000186612 Gm28287 antisense Interval_135361 chr6 38611371 38612869 + 0 NA Intergenic Intergenic 25113 ENSMUSG00000071537.6 ENSMUSG00000071537 ENSMUST00000201345 Klrg2 protein_coding Interval_32131 chr11 105443182 105443369 + 0 NA intron (ENSMUSG00000078627.9, intron 3 of 11) protein_coding-intron (ENSMUSG00000078627.9, intron 3 of 11) 8830 ENSMUSG00000086089.1 ENSMUSG00000086089 ENSMUST00000155987 Gm11640 antisense Interval_12730 chr10 4545726 4546018 + 0 NA intron (ENSMUSG00000019767.12, intron 7 of 10) protein_coding-intron (ENSMUSG00000019767.12, intron 7 of 10) 12877 ENSMUSG00000019767.12 ENSMUSG00000019767 ENSMUST00000157064 Ccdc170 protein_coding Interval_62174 chr15 88561005 88561935 + 0 NA Intergenic Intergenic -38832 ENSMUSG00000054117.8 ENSMUSG00000054117 ENSMUST00000066949 Zdhhc25 protein_coding Interval_173221 chrX 74352085 74353695 + 0 NA exon (ENSMUSG00000015289.4, exon 2 of 3) protein_coding-exon (ENSMUSG00000015289.4, exon 2 of 3) 704 ENSMUSG00000015289.4 ENSMUSG00000015289 ENSMUST00000114152 Lage3 protein_coding Interval_119779 chr4 139933157 139933651 + 0 NA promoter-TSS (ENSMUSG00000085928.1) lincRNA-promoter-TSS (ENSMUSG00000085928.1) 10055 ENSMUSG00000087628.1 ENSMUSG00000087628 ENSMUST00000128563 Gm13028 lincRNA Interval_136989 chr6 65686347 65686647 + 0 NA intron (ENSMUSG00000049001.5, intron 1 of 3) protein_coding-intron (ENSMUSG00000049001.5, intron 1 of 3) -14933 ENSMUSG00000049001.5 ENSMUSG00000049001 ENSMUST00000169795 Ndnf protein_coding Interval_7305 chr1 128679430 128679727 + 0 NA Intergenic Intergenic -71348 ENSMUSG00000099403.1 ENSMUSG00000099403 ENSMUST00000185285 Gm29599 processed_pseudogene Interval_68619 chr16 81564177 81564434 + 0 NA intron (ENSMUSG00000022762.18, intron 12 of 17) protein_coding-intron (ENSMUSG00000022762.18, intron 12 of 15) 98682 ENSMUSG00000022762.18 ENSMUSG00000022762 ENSMUST00000232550 Ncam2 protein_coding Interval_98475 chr2 152677728 152678750 + 0 NA intron (ENSMUSG00000019188.16, intron 2 of 2) protein_coding-intron (ENSMUSG00000019188.16, intron 2 of 10) 8753 ENSMUSG00000019188.16 ENSMUSG00000019188 ENSMUST00000129439 H13 protein_coding Interval_154424 chr8 16170537 16171010 + 0 NA intron (ENSMUSG00000060924.15, intron 23 of 33) protein_coding-intron (ENSMUSG00000060924.15, intron 23 of 69) -1935 ENSMUSG00000093142.1 ENSMUSG00000093142 ENSMUST00000175401 Mir3106 miRNA Interval_13684 chr10 21027864 21028441 + 0 NA intron (ENSMUSG00000019986.17, intron 2 of 5) protein_coding-intron (ENSMUSG00000019986.17, intron 18 of 23) 5641 ENSMUSG00000111006.1 ENSMUSG00000111006 ENSMUST00000215366 Gm10826 TEC Interval_32239 chr11 106390632 106390937 + 0 NA Intergenic Intergenic -9983 ENSMUSG00000001029.15 ENSMUSG00000001029 ENSMUST00000106809 Icam2 protein_coding Interval_133976 chr6 17197529 17198609 + 0 NA promoter-TSS (ENSMUSG00000085171.7) lincRNA-promoter-TSS (ENSMUSG00000085171.7) -38 ENSMUSG00000085171.7 ENSMUSG00000085171 ENSMUST00000124434 D830026I12Rik lincRNA Interval_72616 chr17 31079083 31079455 + 0 NA intron (ENSMUSG00000024030.7, intron 2 of 5) protein_coding-intron (ENSMUSG00000024030.7, intron 2 of 14) 19665 ENSMUSG00000089622.1 ENSMUSG00000089622 ENSMUST00000158997 Gm25447 rRNA Interval_64031 chr16 5700641 5701233 + 0 NA Intergenic Intergenic -274648 ENSMUSG00000101481.1 ENSMUSG00000101481 ENSMUST00000190515 1700123O21Rik sense_intronic Interval_59476 chr15 53658292 53659542 + 0 NA intron (ENSMUSG00000058656.13, intron 2 of 3) protein_coding-intron (ENSMUSG00000058656.13, intron 3 of 4) 37262 ENSMUSG00000115761.1 ENSMUSG00000115761 ENSMUST00000227291 1700015H07Rik antisense Interval_91609 chr2 44556611 44558987 + 0 NA Intergenic Intergenic 128864 ENSMUSG00000088124.1 ENSMUSG00000088124 ENSMUST00000157499 Gm22867 snRNA Interval_14984 chr10 41689908 41691162 + 0 NA intron (ENSMUSG00000075225.15, intron 1 of 13) protein_coding-intron (ENSMUSG00000075225.15, intron 1 of 12) -4479 ENSMUSG00000111376.1 ENSMUSG00000111376 ENSMUST00000214137 Gm47099 processed_pseudogene Interval_103993 chr3 56436878 56437457 + 0 NA Intergenic Intergenic 8245 ENSMUSG00000077710.1 ENSMUSG00000077710 ENSMUST00000104522 Gm25727 snoRNA Interval_149839 chr7 101933448 101934478 + 0 NA promoter-TSS (ENSMUSG00000064307.13) protein_coding-promoter-TSS (ENSMUSG00000064307.13) 12550 ENSMUSG00000110150.1 ENSMUSG00000110150 ENSMUST00000211386 Gm8523 processed_pseudogene Interval_53490 chr14 57812649 57812929 + 0 NA intron (ENSMUSG00000021965.3, intron 5 of 6) protein_coding-intron (ENSMUSG00000021965.3, intron 5 of 8) 13319 ENSMUSG00000021965.3 ENSMUSG00000021965 ENSMUST00000223726 Ska3 protein_coding Interval_4818 chr1 79731692 79731952 + 0 NA intron (ENSMUSG00000073643.11, intron 4 of 6) protein_coding-intron (ENSMUSG00000073643.11, intron 3 of 4) 29916 ENSMUSG00000073643.11 ENSMUSG00000073643 ENSMUST00000125641 Wdfy1 protein_coding Interval_82900 chr18 78620312 78620514 + 0 NA Intergenic Intergenic -23471 ENSMUSG00000024552.16 ENSMUSG00000024552 ENSMUST00000235389 Slc14a2 protein_coding Interval_1704 chr1 31678277 31679159 + 0 NA Intergenic Intergenic -21980 ENSMUSG00000088620.1 ENSMUSG00000088620 ENSMUST00000157995 Gm23032 snRNA Interval_165541 chr9 49203141 49203359 + 0 NA Intergenic Intergenic -47281 ENSMUSG00000054156.8 ENSMUSG00000054156 ENSMUST00000067007 Gm4894 protein_coding Interval_152027 chr7 128392346 128394183 + 0 NA intron (ENSMUSG00000030844.11, intron 2 of 2) protein_coding-intron (ENSMUSG00000030844.11, intron 3 of 4) 17729 ENSMUSG00000084964.2 ENSMUSG00000084964 ENSMUST00000141541 Gm15503 processed_transcript Interval_55136 chr14 78536327 78538359 + 0 NA promoter-TSS (ENSMUSG00000022016.17) protein_coding-promoter-TSS (ENSMUSG00000022016.17) -33372 ENSMUSG00000022016.17 ENSMUSG00000022016 ENSMUST00000226416 Akap11 protein_coding Interval_47760 chr13 92412455 92413802 + 0 NA Intergenic Intergenic -13530 ENSMUSG00000045034.12 ENSMUSG00000045034 ENSMUST00000168871 Ankrd34b protein_coding Interval_50372 chr14 12151594 12152349 + 0 NA exon (ENSMUSG00000114246.1, exon 1 of 1) TEC-exon (ENSMUSG00000114246.1, exon 1 of 1) 613 ENSMUSG00000114246.1 ENSMUSG00000114246 ENSMUST00000225204 Gm48603 TEC Interval_13097 chr10 11317922 11318589 + 0 NA Intergenic Intergenic 12160 ENSMUSG00000111983.1 ENSMUSG00000111983 ENSMUST00000219929 Gm48666 processed_pseudogene Interval_163905 chr9 28189331 28189870 + 0 NA intron (ENSMUSG00000062257.13, intron 1 of 7) protein_coding-intron (ENSMUSG00000062257.13, intron 1 of 7) -8340 ENSMUSG00000087531.7 ENSMUSG00000087531 ENSMUST00000139851 Gm15606 sense_intronic Interval_44557 chr13 46017056 46017511 + 0 NA Intergenic Intergenic -43314 ENSMUSG00000113860.1 ENSMUSG00000113860 ENSMUST00000222657 Gm45949 lincRNA Interval_122822 chr5 25768336 25769666 + 0 NA intron (ENSMUSG00000056367.14, intron 1 of 10) protein_coding-intron (ENSMUSG00000056367.14, intron 1 of 11) 8962 ENSMUSG00000056367.14 ENSMUSG00000056367 ENSMUST00000198693 Actr3b protein_coding Interval_124054 chr5 37874960 37875539 + 0 NA Intergenic Intergenic -19101 ENSMUSG00000106718.1 ENSMUSG00000106718 ENSMUST00000201327 Gm20052 lincRNA Interval_8511 chr1 140415387 140416093 + 0 NA intron (ENSMUSG00000052726.16, intron 8 of 27) protein_coding-intron (ENSMUSG00000052726.16, intron 8 of 26) 149253 ENSMUSG00000102698.1 ENSMUSG00000102698 ENSMUST00000195546 Gm37777 TEC Interval_171744 chr9 120674814 120675054 + 0 NA promoter-TSS (ENSMUSG00000111533.1) processed_transcript-promoter-TSS (ENSMUSG00000111533.1) 529 ENSMUSG00000111533.1 ENSMUSG00000111533 ENSMUST00000214671 Gm39458 processed_transcript Interval_132154 chr5 142993466 142994371 + 0 NA intron (ENSMUSG00000045078.12, intron 15 of 16) protein_coding-intron (ENSMUSG00000045078.12, intron 15 of 16) 33542 ENSMUSG00000029581.14 ENSMUSG00000029581 ENSMUST00000135293 Fscn1 protein_coding Interval_38406 chr12 78768990 78769221 + 0 NA intron (ENSMUSG00000021112.9, intron 1 of 14) protein_coding-intron (ENSMUSG00000021112.9, intron 1 of 14) -16317 ENSMUSG00000088822.1 ENSMUSG00000088822 ENSMUST00000158197 Gm25225 snRNA Interval_70496 chr17 10974215 10974776 + 0 NA intron (ENSMUSG00000023826.16, intron 1 of 10) protein_coding-intron (ENSMUSG00000023826.16, intron 1 of 6) 75500 ENSMUSG00000099797.1 ENSMUSG00000099797 ENSMUST00000188584 Gm3145 processed_pseudogene Interval_135698 chr6 43623272 43623511 + 0 NA intron (ENSMUSG00000029735.17, intron 2 of 3) protein_coding-intron (ENSMUSG00000029735.17, intron 2 of 8) 2575 ENSMUSG00000029735.17 ENSMUSG00000029735 ENSMUST00000114643 Tpk1 protein_coding Interval_16416 chr10 62801113 62802367 + 0 NA Intergenic Intergenic -18553 ENSMUSG00000112806.1 ENSMUSG00000112806 ENSMUST00000218355 Gm48146 TEC Interval_88316 chr2 3683226 3683539 + 0 NA intron (ENSMUSG00000026655.15, intron 2 of 4) protein_coding-intron (ENSMUSG00000026655.15, intron 2 of 4) -2792 ENSMUSG00000080703.2 ENSMUSG00000080703 ENSMUST00000118615 Gm13183 processed_pseudogene Interval_144753 chr7 28038472 28038661 + 0 NA Intergenic Intergenic 11482 ENSMUSG00000030603.16 ENSMUSG00000030603 ENSMUST00000126528 Psmc4 protein_coding Interval_12473 chr1 193799439 193799926 + 0 NA Intergenic Intergenic -67327 ENSMUSG00000104182.1 ENSMUSG00000104182 ENSMUST00000194272 Gm21362 processed_pseudogene Interval_116926 chr4 118259908 118262444 + 0 NA intron (ENSMUSG00000033295.14, intron 5 of 9) protein_coding-intron (ENSMUSG00000033295.14, intron 5 of 32) 30098 ENSMUSG00000033295.14 ENSMUSG00000033295 ENSMUST00000222620 Ptprf protein_coding Interval_105981 chr3 90432848 90434194 + 0 NA promoter-TSS (ENSMUSG00000027933.11) protein_coding-promoter-TSS (ENSMUSG00000027933.11) -18062 ENSMUSG00000087411.1 ENSMUSG00000087411 ENSMUST00000134250 Gm16048 antisense Interval_134400 chr6 28320415 28320676 + 0 NA intron (ENSMUSG00000039841.14, intron 1 of 6) protein_coding-intron (ENSMUSG00000039841.14, intron 1 of 6) 42620 ENSMUSG00000083107.1 ENSMUSG00000083107 ENSMUST00000117943 Gm5303 processed_pseudogene Interval_30902 chr11 97156916 97157427 + 0 NA Intergenic Intergenic -3819 ENSMUSG00000084936.1 ENSMUSG00000084936 ENSMUST00000132296 Gm11583 antisense Interval_157765 chr8 72864460 72865143 + 0 NA intron (ENSMUSG00000004383.18, intron 10 of 15) protein_coding-intron (ENSMUSG00000004383.18, intron 9 of 14) -69314 ENSMUSG00000110563.1 ENSMUSG00000110563 ENSMUST00000212908 Gm45791 processed_pseudogene Interval_22709 chr11 13641348 13641550 + 0 NA Intergenic Intergenic -520630 ENSMUSG00000081631.1 ENSMUSG00000081631 ENSMUST00000121451 Gm12005 processed_pseudogene Interval_29093 chr11 80279294 80280112 + 0 NA Intergenic Intergenic 25002 ENSMUSG00000017686.17 ENSMUSG00000017686 ENSMUST00000236882 Rhot1 protein_coding Interval_51795 chr14 32231486 32232351 + 0 NA TTS (ENSMUSG00000115833.1) processed_pseudogene-TTS (ENSMUSG00000115833.1) 1072 ENSMUSG00000115833.1 ENSMUSG00000115833 ENSMUST00000228947 Gm49196 processed_pseudogene Interval_44377 chr13 44449124 44450375 + 0 NA intron (ENSMUSG00000098107.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000098144.8, intron 1 of 3) 5554 ENSMUSG00000098107.1 ENSMUSG00000098107 ENSMUST00000183264 Gm27007 lincRNA Interval_130357 chr5 126651401 126651633 + 0 NA Intergenic Intergenic -55397 ENSMUSG00000105673.1 ENSMUSG00000105673 ENSMUST00000197352 1700081B01Rik lincRNA Interval_106902 chr3 101731013 101731231 + 0 NA Intergenic Intergenic -17002 ENSMUSG00000105642.1 ENSMUSG00000105642 ENSMUST00000199434 Gm43134 lincRNA Interval_124053 chr5 37855610 37856681 + 0 NA Intergenic Intergenic -31563 ENSMUSG00000048450.10 ENSMUSG00000048450 ENSMUST00000183013 Msx1 protein_coding Interval_152523 chr7 133804898 133806292 + 0 NA intron (ENSMUSG00000053111.13, intron 2 of 7) protein_coding-intron (ENSMUSG00000053111.13, intron 1 of 10) 16110 ENSMUSG00000053111.13 ENSMUSG00000053111 ENSMUST00000211077 Fank1 protein_coding Interval_68910 chr16 88420135 88420401 + 0 NA intron (ENSMUSG00000116885.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000116885.1, intron 1 of 1) -38572 ENSMUSG00000116754.1 ENSMUSG00000116754 ENSMUST00000231384 Gm33255 lincRNA Interval_104808 chr3 74080363 74081684 + 0 NA Intergenic Intergenic -63746 ENSMUSG00000104096.1 ENSMUSG00000104096 ENSMUST00000193390 Gm20356 lincRNA Interval_38861 chr12 83480185 83480486 + 0 NA intron (ENSMUSG00000021221.15, intron 1 of 10) protein_coding-intron (ENSMUSG00000021221.15, intron 1 of 8) 7381 ENSMUSG00000021221.15 ENSMUSG00000021221 ENSMUST00000177801 Dpf3 protein_coding Interval_36933 chr12 55450248 55451011 + 0 NA Intergenic Intergenic 41181 ENSMUSG00000021025.8 ENSMUSG00000021025 ENSMUST00000219869 Nfkbia protein_coding Interval_137801 chr6 82624182 82626313 + 0 NA intron (ENSMUSG00000030042.15, intron 3 of 3) protein_coding-intron (ENSMUSG00000030042.15, intron 3 of 3) -54885 ENSMUSG00000107453.1 ENSMUSG00000107453 ENSMUST00000203711 Gm44145 antisense Interval_158667 chr8 85034873 85035063 + 0 NA Intergenic Intergenic -2200 ENSMUSG00000031691.14 ENSMUSG00000031691 ENSMUST00000210461 Tnpo2 protein_coding Interval_152839 chr7 138652709 138652950 + 0 NA Intergenic Intergenic -48074 ENSMUSG00000109802.1 ENSMUSG00000109802 ENSMUST00000211166 Gm30808 lincRNA Interval_134441 chr6 28747934 28749542 + 0 NA intron (ENSMUSG00000001424.14, intron 15 of 16) protein_coding-intron (ENSMUSG00000001424.14, intron 15 of 23) -47725 ENSMUSG00000103899.1 ENSMUSG00000103899 ENSMUST00000194243 Gm37940 TEC Interval_15784 chr10 56486395 56487509 + 0 NA Intergenic Intergenic -10389 ENSMUSG00000112825.1 ENSMUSG00000112825 ENSMUST00000219246 Gm9118 processed_pseudogene Interval_127791 chr5 107860202 107860620 + 0 NA intron (ENSMUSG00000011831.16, intron 2 of 2) protein_coding-intron (ENSMUSG00000011831.16, intron 1 of 17) 7977 ENSMUSG00000011831.16 ENSMUSG00000011831 ENSMUST00000132406 Evi5 protein_coding Interval_13456 chr10 18406910 18407968 + 0 NA promoter-TSS (ENSMUSG00000039835.16) protein_coding-promoter-TSS (ENSMUSG00000039835.16) -70198 ENSMUSG00000111313.1 ENSMUSG00000111313 ENSMUST00000213578 Gm18942 processed_pseudogene Interval_20236 chr10 116343918 116344104 + 0 NA exon (ENSMUSG00000020154.10, exon 14 of 32) protein_coding-exon (ENSMUSG00000020154.10, exon 14 of 32) 3428 ENSMUSG00000065086.1 ENSMUSG00000065086 ENSMUST00000083152 Gm26495 snoRNA Interval_106217 chr3 94686318 94686927 + 0 NA Intergenic Intergenic -7026 ENSMUSG00000068877.12 ENSMUSG00000068877 ENSMUST00000174223 Selenbp2 protein_coding Interval_121694 chr5 5370147 5371530 + 0 NA intron (ENSMUSG00000028926.15, intron 2 of 2) protein_coding-intron (ENSMUSG00000028926.15, intron 2 of 14) 9355 ENSMUSG00000028926.15 ENSMUSG00000028926 ENSMUST00000200637 Cdk14 protein_coding Interval_45599 chr13 56176270 56176590 + 0 NA exon (ENSMUSG00000049625.6, exon 3 of 3) protein_coding-exon (ENSMUSG00000049625.6, exon 3 of 3) 2455 ENSMUSG00000049625.6 ENSMUSG00000049625 ENSMUST00000225063 Tifab protein_coding Interval_90045 chr2 27498804 27499435 + 0 NA intron (ENSMUSG00000026918.16, intron 1 of 11) protein_coding-intron (ENSMUSG00000026918.16, intron 1 of 11) -16038 ENSMUSG00000026917.15 ENSMUSG00000026917 ENSMUST00000125088 Wdr5 protein_coding Interval_127678 chr5 106574159 106575321 + 0 NA promoter-TSS (ENSMUSG00000099061.1) lincRNA-promoter-TSS (ENSMUSG00000099061.1) -25 ENSMUSG00000099061.1 ENSMUSG00000099061 ENSMUST00000124394 Gm28050 lincRNA Interval_120608 chr4 149671297 149671604 + 0 NA intron (ENSMUSG00000039936.18, intron 2 of 2) protein_coding-intron (ENSMUSG00000039936.18, intron 2 of 23) 2744 ENSMUSG00000039936.18 ENSMUSG00000039936 ENSMUST00000124510 Pik3cd protein_coding Interval_27916 chr11 70833347 70834363 + 0 NA Intergenic Intergenic -10937 ENSMUSG00000020817.16 ENSMUSG00000020817 ENSMUST00000178245 Rabep1 protein_coding Interval_64034 chr16 5817188 5817674 + 0 NA Intergenic Intergenic -158154 ENSMUSG00000101481.1 ENSMUSG00000101481 ENSMUST00000190515 1700123O21Rik sense_intronic Interval_24672 chr11 35801283 35801541 + 0 NA Intergenic Intergenic -2528 ENSMUSG00000051062.6 ENSMUSG00000051062 ENSMUST00000160726 Fbll1 protein_coding Interval_41013 chr12 110600913 110602272 + 0 NA exon (ENSMUSG00000018707.13, exon 1 of 77) protein_coding-exon (ENSMUSG00000018707.13, exon 1 of 77) 371 ENSMUSG00000113662.1 ENSMUSG00000113662 ENSMUST00000222675 Gm35558 TEC Interval_139694 chr6 107218107 107219413 + 0 NA intron (ENSMUSG00000107714.1, intron 1 of 3) lincRNA-intron (ENSMUSG00000107714.1, intron 1 of 3) 57978 ENSMUSG00000107714.1 ENSMUSG00000107714 ENSMUST00000203245 Gm34933 lincRNA Interval_64578 chr16 13436886 13438415 + 0 NA intron (ENSMUSG00000087526.2, intron 3 of 7) antisense-intron (ENSMUSG00000087526.2, intron 1 of 3) -11873 ENSMUSG00000076972.2 ENSMUSG00000076972 ENSMUST00000103784 Mir193b miRNA Interval_25237 chr11 45762906 45763279 + 0 NA Intergenic Intergenic -44995 ENSMUSG00000086686.1 ENSMUSG00000086686 ENSMUST00000137002 F630206G17Rik processed_transcript Interval_165211 chr9 45369831 45371117 + 0 NA promoter-TSS (ENSMUSG00000066705.7) protein_coding-promoter-TSS (ENSMUSG00000066705.7) 289 ENSMUSG00000066705.7 ENSMUSG00000066705 ENSMUST00000215281 Fxyd6 protein_coding Interval_14269 chr10 30120909 30121615 + 0 NA Intergenic Intergenic -35928 ENSMUSG00000111001.1 ENSMUSG00000111001 ENSMUST00000215786 Gm8767 processed_pseudogene Interval_99565 chr2 163259418 163260200 + 0 NA intron (ENSMUSG00000074607.11, intron 2 of 8) protein_coding-intron (ENSMUSG00000074607.11, intron 2 of 8) 34355 ENSMUSG00000074607.11 ENSMUSG00000074607 ENSMUST00000148599 Tox2 protein_coding Interval_62638 chr15 95855240 95856210 + 0 NA intron (ENSMUSG00000064210.7, intron 2 of 20) protein_coding-intron (ENSMUSG00000064210.7, intron 1 of 19) 24092 ENSMUSG00000092978.1 ENSMUSG00000092978 ENSMUST00000175237 Gm25070 miRNA Interval_18886 chr10 92404221 92404430 + 0 NA intron (ENSMUSG00000110794.1, intron 1 of 3) lincRNA-intron (ENSMUSG00000110794.1, intron 1 of 3) 3311 ENSMUSG00000110794.1 ENSMUSG00000110794 ENSMUST00000214657 4930401A07Rik lincRNA Interval_43964 chr13 38485635 38485910 + 0 NA exon (ENSMUSG00000039004.6, exon 4 of 7) protein_coding-exon (ENSMUSG00000039004.6, exon 4 of 7) -23967 ENSMUSG00000114895.1 ENSMUSG00000114895 ENSMUST00000225893 4930579J19Rik antisense Interval_81736 chr18 64205987 64206333 + 0 NA intron (ENSMUSG00000086128.8, intron 2 of 2) antisense-intron (ENSMUSG00000086128.8, intron 2 of 5) -5633 ENSMUSG00000118191.1 ENSMUSG00000118191 ENSMUST00000235473 Gm45934 transcribed_processed_pseudogene Interval_22322 chr11 8772668 8774165 + 0 NA Intergenic Intergenic 33432 ENSMUSG00000081539.1 ENSMUSG00000081539 ENSMUST00000121505 Gm11990 processed_pseudogene Interval_164235 chr9 33528248 33529596 + 0 NA Intergenic Intergenic -36908 ENSMUSG00000111878.1 ENSMUSG00000111878 ENSMUST00000213509 Gm47777 lincRNA Interval_71098 chr17 17962297 17962491 + 0 NA intron (ENSMUSG00000079700.7, intron 1 of 1) protein_coding-intron (ENSMUSG00000079700.7, intron 1 of 1) -8064 ENSMUSG00000079700.7 ENSMUSG00000079700 ENSMUST00000115565 Fpr3 protein_coding Interval_82980 chr18 80144542 80145144 + 0 NA intron (ENSMUSG00000053950.10, intron 1 of 3) protein_coding-intron (ENSMUSG00000053950.10, intron 1 of 3) 6639 ENSMUSG00000053950.10 ENSMUSG00000053950 ENSMUST00000066743 Adnp2 protein_coding Interval_142730 chr6 145193313 145193758 + 0 NA intron (ENSMUSG00000043541.16, intron 7 of 16) protein_coding-intron (ENSMUSG00000043541.16, intron 7 of 15) 11260 ENSMUSG00000086863.1 ENSMUSG00000086863 ENSMUST00000141307 Gm15543 antisense Interval_27117 chr11 63039631 63040858 + 0 NA Intergenic Intergenic -21410 ENSMUSG00000042189.5 ENSMUSG00000042189 ENSMUST00000035732 Tekt3 protein_coding Interval_150678 chr7 113262403 113264554 + 0 NA intron (ENSMUSG00000055116.8, intron 3 of 20) protein_coding-intron (ENSMUSG00000055116.8, intron 2 of 19) 28855 ENSMUSG00000055116.8 ENSMUSG00000055116 ENSMUST00000211547 Arntl protein_coding Interval_9284 chr1 155816464 155816740 + 0 NA Intergenic Intergenic -1892 ENSMUSG00000102558.1 ENSMUSG00000102558 ENSMUST00000195048 Gm37571 antisense Interval_17913 chr10 80791026 80793269 + 0 NA exon (ENSMUSG00000061589.14, exon 2 of 2) protein_coding-exon (ENSMUSG00000061589.14, exon 2 of 2) 5558 ENSMUSG00000035278.9 ENSMUSG00000035278 ENSMUST00000217735 Plekhj1 protein_coding Interval_9706 chr1 161176469 161176711 + 0 NA promoter-TSS (ENSMUSG00000102817.2) transcribed_unprocessed_pseudogene-promoter-TSS (ENSMUSG00000102817.2) -17276 ENSMUSG00000049160.15 ENSMUSG00000049160 ENSMUST00000178511 Tex50 protein_coding Interval_15502 chr10 49852766 49853092 + 0 NA Intergenic Intergenic 26659 ENSMUSG00000111551.1 ENSMUSG00000111551 ENSMUST00000215393 Gm48128 processed_pseudogene Interval_47287 chr13 80747274 80747613 + 0 NA Intergenic Intergenic 138081 ENSMUSG00000089827.1 ENSMUSG00000089827 ENSMUST00000161006 1700023H06Rik processed_transcript Interval_112362 chr4 40837308 40837697 + 0 NA intron (ENSMUSG00000028413.13, intron 1 of 4) protein_coding-intron (ENSMUSG00000028413.13, intron 1 of 5) 12636 ENSMUSG00000096377.1 ENSMUSG00000096377 ENSMUST00000177794 Mir5123 miRNA Interval_23210 chr11 20574516 20576417 + 0 NA promoter-TSS (ENSMUSG00000083555.1) processed_pseudogene-promoter-TSS (ENSMUSG00000083555.1) -277 ENSMUSG00000083555.1 ENSMUSG00000083555 ENSMUST00000121890 Gm12035 processed_pseudogene Interval_55542 chr14 91449442 91449652 + 0 NA Intergenic Intergenic 198292 ENSMUSG00000115368.1 ENSMUSG00000115368 ENSMUST00000227213 Gm48942 lincRNA Interval_5817 chr1 92142261 92144874 + 0 NA intron (ENSMUSG00000026313.16, intron 3 of 4) protein_coding-intron (ENSMUSG00000026313.16, intron 1 of 25) 52127 ENSMUSG00000026313.16 ENSMUSG00000026313 ENSMUST00000212408 Hdac4 protein_coding Interval_153732 chr8 5509303 5510127 + 0 NA Intergenic Intergenic -17974 ENSMUSG00000109266.1 ENSMUSG00000109266 ENSMUST00000209048 Gm6426 processed_pseudogene Interval_41476 chr12 114790500 114791246 + 0 NA Intergenic Intergenic -2068 ENSMUSG00000094546.1 ENSMUSG00000094546 ENSMUST00000103510 Ighv1-26 IG_V_gene Interval_52191 chr14 39763613 39764245 + 0 NA Intergenic Intergenic 76080 ENSMUSG00000114848.1 ENSMUSG00000114848 ENSMUST00000224649 Gm35389 processed_pseudogene Interval_111908 chr4 32465174 32466733 + 0 NA intron (ENSMUSG00000040270.16, intron 1 of 4) protein_coding-intron (ENSMUSG00000040270.16, intron 3 of 7) 48518 ENSMUSG00000040270.16 ENSMUSG00000040270 ENSMUST00000125263 Bach2 protein_coding Interval_174505 chrX 153723257 153725592 + 0 NA promoter-TSS (ENSMUSG00000109128.1) antisense-promoter-TSS (ENSMUSG00000109128.1) -543 ENSMUSG00000109128.1 ENSMUSG00000109128 ENSMUST00000208332 Gm45022 antisense Interval_157016 chr8 64454668 64454997 + 0 NA Intergenic Intergenic -37732 ENSMUSG00000109579.1 ENSMUSG00000109579 ENSMUST00000211285 Gm35521 lincRNA Interval_26428 chr11 57801009 57802539 + 0 NA promoter-TSS (ENSMUSG00000087165.7) processed_transcript-promoter-TSS (ENSMUSG00000087165.7) 137 ENSMUSG00000020519.5 ENSMUSG00000020519 ENSMUST00000020826 Sap30l protein_coding Interval_89098 chr2 16296111 16296346 + 0 NA Intergenic Intergenic -272803 ENSMUSG00000103865.1 ENSMUSG00000103865 ENSMUST00000193596 Gm37416 TEC Interval_41229 chr12 111987987 111988452 + 0 NA intron (ENSMUSG00000054003.13, intron 2 of 35) protein_coding-intron (ENSMUSG00000054003.13, intron 2 of 35) -8076 ENSMUSG00000091402.7 ENSMUSG00000091402 ENSMUST00000185354 Rd3l protein_coding Interval_150201 chr7 107951529 107952717 + 0 NA exon (ENSMUSG00000108892.1, exon 1 of 1) processed_pseudogene-exon (ENSMUSG00000108892.1, exon 1 of 1) 233 ENSMUSG00000108892.1 ENSMUSG00000108892 ENSMUST00000207265 Gm9449 processed_pseudogene Interval_34165 chr11 121027418 121027631 + 0 NA Intergenic Intergenic -1878 ENSMUSG00000086835.2 ENSMUSG00000086835 ENSMUST00000136500 Gm11775 antisense Interval_73741 chr17 43119625 43119805 + 0 NA Intergenic Intergenic 38551 ENSMUSG00000117011.1 ENSMUSG00000117011 ENSMUST00000232795 E130008D07Rik lincRNA Interval_21674 chr11 3620260 3620699 + 0 NA Intergenic Intergenic 5369 ENSMUSG00000084211.1 ENSMUSG00000084211 ENSMUST00000117640 Gm11949 processed_pseudogene Interval_78252 chr18 10799148 10799435 + 0 NA intron (ENSMUSG00000024294.14, intron 17 of 21) protein_coding-intron (ENSMUSG00000024294.14, intron 16 of 20) -13408 ENSMUSG00000095438.1 ENSMUSG00000095438 ENSMUST00000179771 Mir133a-1hg antisense Interval_154793 chr8 23410002 23412376 + 0 NA promoter-TSS (ENSMUSG00000031548.7) protein_coding-promoter-TSS (ENSMUSG00000031548.7) -313 ENSMUSG00000031548.7 ENSMUSG00000031548 ENSMUST00000033952 Sfrp1 protein_coding Interval_59515 chr15 54894702 54894922 + 0 NA intron (ENSMUSG00000022425.16, intron 8 of 12) protein_coding-intron (ENSMUSG00000022425.16, intron 8 of 24) -32126 ENSMUSG00000022425.16 ENSMUSG00000022425 ENSMUST00000226339 Enpp2 protein_coding Interval_173811 chrX 104721107 104722022 + 0 NA Intergenic Intergenic -24918 ENSMUSG00000083049.1 ENSMUSG00000083049 ENSMUST00000122247 Gm14822 processed_pseudogene Interval_152032 chr7 128438281 128438532 + 0 NA Intergenic Intergenic -19648 ENSMUSG00000030844.11 ENSMUSG00000030844 ENSMUST00000147840 Rgs10 protein_coding Interval_127726 chr5 107112415 107112876 + 0 NA intron (ENSMUSG00000029287.14, intron 14 of 14) protein_coding-intron (ENSMUSG00000029287.14, intron 16 of 16) 23043 ENSMUSG00000106643.1 ENSMUSG00000106643 ENSMUST00000199780 Gm43422 TEC Interval_55297 chr14 81112495 81113162 + 0 NA intron (ENSMUSG00000115542.1, intron 2 of 3) lincRNA-intron (ENSMUSG00000115542.1, intron 2 of 3) 12060 ENSMUSG00000115542.1 ENSMUSG00000115542 ENSMUST00000226987 Gm49046 lincRNA Interval_41891 chr13 3923421 3923970 + 0 NA promoter-TSS (ENSMUSG00000021216.7) protein_coding-promoter-TSS (ENSMUSG00000021216.7) 5421 ENSMUSG00000021216.7 ENSMUSG00000021216 ENSMUST00000021639 Tubal3 protein_coding Interval_2193 chr1 36943501 36944690 + 0 NA promoter-TSS (ENSMUSG00000026116.11) protein_coding-promoter-TSS (ENSMUSG00000026116.11) -4273 ENSMUSG00000026116.11 ENSMUSG00000026116 ENSMUST00000185964 Tmem131 protein_coding Interval_127302 chr5 102342569 102343250 + 0 NA Intergenic Intergenic -73294 ENSMUSG00000106295.1 ENSMUSG00000106295 ENSMUST00000197280 Gm42932 processed_pseudogene Interval_126363 chr5 87191047 87191442 + 0 NA TTS (ENSMUSG00000106330.1) processed_pseudogene-TTS (ENSMUSG00000106330.1) 1929 ENSMUSG00000106330.1 ENSMUSG00000106330 ENSMUST00000196373 Gm43369 processed_pseudogene Interval_8893 chr1 151863267 151864261 + 0 NA intron (ENSMUSG00000032666.16, intron 6 of 6) protein_coding-intron (ENSMUSG00000032666.16, intron 6 of 6) -8809 ENSMUSG00000084557.1 ENSMUSG00000084557 ENSMUST00000122608 Gm25279 snRNA Interval_136645 chr6 56914764 56915022 + 0 NA intron (ENSMUSG00000029780.14, intron 1 of 9) protein_coding-intron (ENSMUSG00000029780.14, intron 1 of 8) -8311 ENSMUSG00000108260.1 ENSMUSG00000108260 ENSMUST00000204973 Gm3793 TEC Interval_90669 chr2 31784753 31785568 + 0 NA intron (ENSMUSG00000026842.16, intron 5 of 11) protein_coding-intron (ENSMUSG00000026842.16, intron 4 of 10) 25420 ENSMUSG00000043102.2 ENSMUSG00000043102 ENSMUST00000057407 Qrfp protein_coding Interval_104027 chr3 57503638 57504303 + 0 NA intron (ENSMUSG00000027803.14, intron 2 of 6) protein_coding-intron (ENSMUSG00000027803.14, intron 2 of 6) -24262 ENSMUSG00000083538.1 ENSMUSG00000083538 ENSMUST00000120831 Gm16016 processed_pseudogene Interval_85120 chr19 23015424 23016110 + 0 NA intron (ENSMUSG00000097930.2, intron 1 of 1) lincRNA-intron (ENSMUSG00000097930.2, intron 1 of 1) -45687 ENSMUSG00000118155.1 ENSMUSG00000118155 ENSMUST00000235686 Gm50136 lincRNA Interval_165013 chr9 43896390 43896871 + 0 NA Intergenic Intergenic 9372 ENSMUSG00000088044.1 ENSMUSG00000088044 ENSMUST00000157419 Gm23326 snRNA Interval_28484 chr11 76286925 76288048 + 0 NA intron (ENSMUSG00000020844.6, intron 1 of 7) protein_coding-intron (ENSMUSG00000020844.6, intron 1 of 7) 38274 ENSMUSG00000038046.4 ENSMUSG00000038046 ENSMUST00000155526 Mrm3 protein_coding Interval_80990 chr18 52427617 52427826 + 0 NA Intergenic Intergenic -38001 ENSMUSG00000024528.8 ENSMUSG00000024528 ENSMUST00000237434 Srfbp1 protein_coding Interval_51558 chr14 30136908 30137410 + 0 NA intron (ENSMUSG00000015968.18, intron 1 of 3) protein_coding-intron (ENSMUSG00000015968.18, intron 9 of 48) 42397 ENSMUSG00000118437.1 ENSMUSG00000118437 ENSMUST00000238444 Gm50467 antisense Interval_143783 chr7 16285423 16286887 + 0 NA promoter-TSS (ENSMUSG00000041375.18) protein_coding-promoter-TSS (ENSMUSG00000041375.18) -619 ENSMUSG00000041375.18 ENSMUSG00000041375 ENSMUST00000145519 Ccdc9 protein_coding Interval_123870 chr5 36141322 36141511 + 0 NA intron (ENSMUSG00000029093.14, intron 3 of 7) protein_coding-intron (ENSMUSG00000029093.14, intron 3 of 26) -62605 ENSMUSG00000043430.5 ENSMUSG00000043430 ENSMUST00000052224 Psapl1 protein_coding Interval_85195 chr19 23654318 23654548 + 0 NA Intergenic Intergenic -1621 ENSMUSG00000033053.4 ENSMUSG00000033053 ENSMUST00000035849 1700028P14Rik protein_coding Interval_41753 chr12 118683117 118683728 + 0 NA Intergenic Intergenic 49633 ENSMUSG00000113546.1 ENSMUSG00000113546 ENSMUST00000223539 Gm18441 processed_pseudogene Interval_124164 chr5 38774552 38776348 + 0 NA intron (ENSMUSG00000039315.15, intron 4 of 18) protein_coding-intron (ENSMUSG00000039315.15, intron 4 of 18) 39466 ENSMUSG00000079528.9 ENSMUSG00000079528 ENSMUST00000177682 Clnkos antisense Interval_80483 chr18 42601801 42602265 + 0 NA intron (ENSMUSG00000117719.1, intron 2 of 2) lincRNA-intron (ENSMUSG00000117719.1, intron 2 of 2) 9627 ENSMUSG00000117882.1 ENSMUSG00000117882 ENSMUST00000237737 Gm50213 processed_pseudogene Interval_90725 chr2 32137663 32138260 + 0 NA Intergenic Intergenic -35210 ENSMUSG00000099155.1 ENSMUSG00000099155 ENSMUST00000184513 Gm27805 miRNA Interval_138059 chr6 84912383 84913078 + 0 NA intron (ENSMUSG00000033769.16, intron 5 of 13) protein_coding-intron (ENSMUSG00000033769.16, intron 6 of 16) -8393 ENSMUSG00000108012.1 ENSMUSG00000108012 ENSMUST00000204154 Gm44012 antisense Interval_143597 chr7 13037452 13038616 + 0 NA promoter-TSS (ENSMUSG00000005575.16) protein_coding-promoter-TSS (ENSMUSG00000005575.16) 241 ENSMUSG00000005575.16 ENSMUSG00000005575 ENSMUST00000126827 Ube2m protein_coding Interval_126434 chr5 88559075 88559369 + 0 NA Intergenic Intergenic 4760 ENSMUSG00000070697.4 ENSMUSG00000070697 ENSMUST00000090413 Utp3 protein_coding Interval_151881 chr7 127284314 127284609 + 0 NA Intergenic Intergenic 1924 ENSMUSG00000090460.3 ENSMUSG00000090460 ENSMUST00000172206 Gm17511 processed_pseudogene Interval_10375 chr1 170108731 170108935 + 0 NA intron (ENSMUSG00000026674.9, intron 1 of 3) protein_coding-intron (ENSMUSG00000026674.9, intron 1 of 17) 1929 ENSMUSG00000026674.9 ENSMUSG00000026674 ENSMUST00000194619 Ddr2 protein_coding Interval_69766 chr16 96120524 96121327 + 0 NA exon (ENSMUSG00000040681.16, exon 6 of 6) protein_coding-exon (ENSMUSG00000040681.16, exon 6 of 6) 4414 ENSMUSG00000040681.16 ENSMUSG00000040681 ENSMUST00000233297 Hmgn1 protein_coding Interval_127647 chr5 106083444 106084335 + 0 NA Intergenic Intergenic -11202 ENSMUSG00000106483.1 ENSMUSG00000106483 ENSMUST00000200427 Gm32736 lincRNA Interval_120280 chr4 145155662 145156615 + 0 NA promoter-TSS (ENSMUSG00000020220.16) protein_coding-promoter-TSS (ENSMUSG00000020220.16) -652 ENSMUSG00000020220.16 ENSMUSG00000020220 ENSMUST00000132700 Vps13d protein_coding Interval_100059 chr2 166841534 166841899 + 0 NA intron (ENSMUSG00000074582.10, intron 4 of 5) protein_coding-intron (ENSMUSG00000074582.10, intron 6 of 38) 14059 ENSMUSG00000074582.10 ENSMUSG00000074582 ENSMUST00000144847 Arfgef2 protein_coding Interval_135847 chr6 47912454 47913721 + 0 NA Intergenic Intergenic -13219 ENSMUSG00000052763.7 ENSMUSG00000052763 ENSMUST00000156500 Zfp212 protein_coding Interval_140709 chr6 120761969 120762297 + 0 NA TTS (ENSMUSG00000071226.11) protein_coding-TTS (ENSMUSG00000071226.11) -11445 ENSMUSG00000004902.7 ENSMUSG00000004902 ENSMUST00000112682 Slc25a18 protein_coding Interval_85425 chr19 25713304 25713756 + 0 NA Intergenic Intergenic 41119 ENSMUSG00000048138.10 ENSMUSG00000048138 ENSMUST00000053068 Dmrt2 protein_coding Interval_48788 chr13 103303559 103303812 + 0 NA intron (ENSMUSG00000034751.17, intron 1 of 3) protein_coding-intron (ENSMUSG00000034751.17, intron 1 of 4) -52567 ENSMUSG00000047643.5 ENSMUSG00000047643 ENSMUST00000052030 Gm5454 processed_pseudogene Interval_114523 chr4 82165959 82166914 + 0 NA Intergenic Intergenic 100479 ENSMUSG00000085022.2 ENSMUSG00000085022 ENSMUST00000161588 Gm5860 lincRNA Interval_28164 chr11 73353880 73354474 + 0 NA exon (ENSMUSG00000062128.8, exon 1 of 1) protein_coding-exon (ENSMUSG00000062128.8, exon 1 of 1) 3394 ENSMUSG00000062128.8 ENSMUSG00000062128 ENSMUST00000108465 Olfr20 protein_coding Interval_3333 chr1 56995169 56995563 + 0 NA intron (ENSMUSG00000087022.4, intron 1 of 4) processed_transcript-intron (ENSMUSG00000087022.4, intron 1 of 4) 3909 ENSMUSG00000094128.1 ENSMUSG00000094128 ENSMUST00000179712 Gm23943 miRNA Interval_80907 chr18 50058547 50058855 + 0 NA intron (ENSMUSG00000062210.13, intron 3 of 3) protein_coding-intron (ENSMUSG00000062210.13, intron 1 of 1) -4857 ENSMUSG00000086600.8 ENSMUSG00000086600 ENSMUST00000147073 C030005K06Rik processed_transcript Interval_172154 chrX 8050287 8051833 + 0 NA promoter-TSS (ENSMUSG00000087193.7) antisense-promoter-TSS (ENSMUSG00000087193.7) -531 ENSMUSG00000087193.7 ENSMUSG00000087193 ENSMUST00000188632 Gm14820 antisense Interval_21509 chr10 129011375 129011943 + 0 NA exon (ENSMUSG00000063374.4, exon 1 of 1) protein_coding-exon (ENSMUSG00000063374.4, exon 1 of 1) 868 ENSMUSG00000063374.4 ENSMUSG00000063374 ENSMUST00000077460 Olfr763 protein_coding Interval_27926 chr11 70924367 70925621 + 0 NA intron (ENSMUSG00000020817.16, intron 11 of 16) protein_coding-intron (ENSMUSG00000020817.16, intron 12 of 17) -15349 ENSMUSG00000084139.1 ENSMUSG00000084139 ENSMUST00000121605 Gm12322 processed_pseudogene Interval_7412 chr1 131123415 131124099 + 0 NA Intergenic Intergenic 14488 ENSMUSG00000016526.8 ENSMUSG00000016526 ENSMUST00000189756 Dyrk3 protein_coding Interval_120809 chr4 150766348 150767102 + 0 NA Intergenic Intergenic -59008 ENSMUSG00000085097.1 ENSMUSG00000085097 ENSMUST00000133196 Gm13049 lincRNA Interval_154736 chr8 22939023 22940199 + 0 NA exon (ENSMUSG00000031540.14, exon 18 of 18) protein_coding-exon (ENSMUSG00000031540.14, exon 18 of 18) 18830 ENSMUSG00000109793.1 ENSMUSG00000109793 ENSMUST00000210691 Gm10043 processed_pseudogene Interval_102958 chr3 33712379 33712884 + 0 NA intron (ENSMUSG00000104588.1, intron 3 of 3) lincRNA-intron (ENSMUSG00000104588.1, intron 3 of 3) -17969 ENSMUSG00000106231.1 ENSMUSG00000106231 ENSMUST00000200334 Gm18611 processed_pseudogene Interval_156973 chr8 63169637 63170483 + 0 NA intron (ENSMUSG00000054162.15, intron 5 of 11) protein_coding-intron (ENSMUSG00000054162.15, intron 4 of 10) -28912 ENSMUSG00000109622.1 ENSMUSG00000109622 ENSMUST00000209973 Gm45517 TEC Interval_151270 chr7 120567539 120567855 + 0 NA Intergenic Intergenic 14541 ENSMUSG00000109578.1 ENSMUSG00000109578 ENSMUST00000207306 Gm16475 transcribed_unprocessed_pseudogene Interval_52942 chr14 52169228 52170040 + 0 NA intron (ENSMUSG00000035726.8, intron 22 of 25) protein_coding-intron (ENSMUSG00000035726.8, intron 22 of 25) -6504 ENSMUSG00000035726.8 ENSMUSG00000035726 ENSMUST00000227577 Supt16 protein_coding Interval_105760 chr3 89187155 89188953 + 0 NA promoter-TSS (ENSMUSG00000032657.15) protein_coding-promoter-TSS (ENSMUSG00000032657.15) 70 ENSMUSG00000032657.15 ENSMUSG00000032657 ENSMUST00000155033 Fam189b protein_coding Interval_71846 chr17 26480363 26480597 + 0 NA intron (ENSMUSG00000118107.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000118107.1, intron 1 of 2) 10429 ENSMUSG00000118107.1 ENSMUSG00000118107 ENSMUST00000236309 Gm34455 lincRNA Interval_71203 chr17 21115088 21116038 + 0 NA Intergenic Intergenic -13788 ENSMUSG00000096857.1 ENSMUSG00000096857 ENSMUST00000170486 Gm7732 processed_pseudogene Interval_108676 chr3 130035407 130035610 + 0 NA intron (ENSMUSG00000001052.15, intron 1 of 5) protein_coding-intron (ENSMUSG00000001052.15, intron 2 of 23) -32904 ENSMUSG00000063328.6 ENSMUSG00000063328 ENSMUST00000076703 Gm9396 processed_pseudogene Interval_14747 chr10 39554977 39555916 + 0 NA TTS (ENSMUSG00000087014.1) antisense-TTS (ENSMUSG00000087014.1) 2616 ENSMUSG00000087014.1 ENSMUSG00000087014 ENSMUST00000153722 Gm16364 antisense Interval_127288 chr5 102124190 102124522 + 0 NA Intergenic Intergenic -35170 ENSMUSG00000105088.1 ENSMUSG00000105088 ENSMUST00000195986 Gm17978 processed_pseudogene Interval_171928 chr9 122631647 122632109 + 0 NA intron (ENSMUSG00000097736.8, intron 2 of 3) lincRNA-intron (ENSMUSG00000097736.8, intron 2 of 3) 15952 ENSMUSG00000111143.1 ENSMUSG00000111143 ENSMUST00000216699 Gm47134 lincRNA Interval_159787 chr8 103449303 103449498 + 0 NA Intergenic Intergenic -101866 ENSMUSG00000110340.1 ENSMUSG00000110340 ENSMUST00000209501 1600027J07Rik lincRNA Interval_32243 chr11 106418525 106419200 + 0 NA exon (ENSMUSG00000020715.9, exon 10 of 22) protein_coding-exon (ENSMUSG00000020715.9, exon 10 of 22) -38061 ENSMUSG00000001029.15 ENSMUSG00000001029 ENSMUST00000106809 Icam2 protein_coding Interval_82545 chr18 75038350 75039080 + 0 NA intron (ENSMUSG00000035765.10, intron 1 of 8) protein_coding-intron (ENSMUSG00000035765.10, intron 1 of 16) 14859 ENSMUSG00000098305.1 ENSMUSG00000098305 ENSMUST00000185185 Gm27781 rRNA Interval_160019 chr8 105826765 105827961 + 0 NA promoter-TSS (ENSMUSG00000031893.7) protein_coding-promoter-TSS (ENSMUSG00000031893.7) -13 ENSMUSG00000037415.7 ENSMUSG00000037415 ENSMUST00000212856 Ranbp10 protein_coding Interval_108997 chr3 134279673 134279906 + 0 NA Intergenic Intergenic -7279 ENSMUSG00000104779.1 ENSMUSG00000104779 ENSMUST00000198755 Gm43559 processed_pseudogene Interval_51733 chr14 31773825 31774026 + 0 NA intron (ENSMUSG00000014496.8, intron 1 of 5) protein_coding-intron (ENSMUSG00000014496.8, intron 2 of 27) -19511 ENSMUSG00000115210.1 ENSMUSG00000115210 ENSMUST00000227034 Gm49308 TEC Interval_35740 chr12 28783620 28783863 + 0 NA intron (ENSMUSG00000036613.8, intron 3 of 4) protein_coding-intron (ENSMUSG00000036613.8, intron 3 of 9) -5928 ENSMUSG00000114081.1 ENSMUSG00000114081 ENSMUST00000220880 Gm48904 TEC Interval_103041 chr3 34691639 34692459 + 0 NA Intergenic Intergenic 9416 ENSMUSG00000105101.1 ENSMUSG00000105101 ENSMUST00000197990 Gm43206 TEC Interval_129938 chr5 123166029 123166739 + 0 NA exon (ENSMUSG00000038384.16, exon 16 of 16) protein_coding-exon (ENSMUSG00000038384.16, exon 16 of 16) 16338 ENSMUSG00000029445.13 ENSMUSG00000029445 ENSMUST00000124110 Hpd protein_coding Interval_118669 chr4 133103434 133104682 + 0 NA Intergenic Intergenic -26482 ENSMUSG00000028868.13 ENSMUSG00000028868 ENSMUST00000136637 Wasf2 protein_coding Interval_76786 chr17 84044516 84046127 + 0 NA Intergenic Intergenic 8431 ENSMUSG00000117432.1 ENSMUSG00000117432 ENSMUST00000234723 Gm49967 lincRNA Interval_146276 chr7 45091476 45092380 + 0 NA promoter-TSS (ENSMUSG00000019539.11) protein_coding-promoter-TSS (ENSMUSG00000019539.11) 519 ENSMUSG00000109947.1 ENSMUSG00000109947 ENSMUST00000209808 Gm45669 antisense Interval_7222 chr1 127982206 127982888 + 0 NA exon (ENSMUSG00000104164.1, exon 1 of 1) TEC-exon (ENSMUSG00000104164.1, exon 1 of 1) 2140 ENSMUSG00000104164.1 ENSMUSG00000104164 ENSMUST00000193744 Gm38248 TEC Interval_72980 chr17 33929197 33931309 + 0 NA promoter-TSS (ENSMUSG00000041354.16) protein_coding-promoter-TSS (ENSMUSG00000041354.16) -639 ENSMUSG00000041354.16 ENSMUSG00000041354 ENSMUST00000174442 Rgl2 protein_coding Interval_2915 chr1 49741888 49742116 + 0 NA Intergenic Intergenic -162416 ENSMUSG00000099882.1 ENSMUSG00000099882 ENSMUST00000186262 Gm28388 processed_pseudogene Interval_153770 chr8 8109320 8110229 + 0 NA intron (ENSMUSG00000109127.1, intron 3 of 5) lincRNA-intron (ENSMUSG00000109127.1, intron 3 of 5) 43108 ENSMUSG00000109566.1 ENSMUSG00000109566 ENSMUST00000207352 Gm31401 lincRNA Interval_78192 chr18 10029173 10031122 + 0 NA promoter-TSS (ENSMUSG00000047879.17) protein_coding-promoter-TSS (ENSMUSG00000047879.17) 14958 ENSMUSG00000047879.17 ENSMUSG00000047879 ENSMUST00000150321 Usp14 protein_coding Interval_79734 chr18 34792057 34792690 + 0 NA intron (ENSMUSG00000038773.11, intron 1 of 22) protein_coding-intron (ENSMUSG00000038773.11, intron 1 of 23) -4522 ENSMUSG00000038773.11 ENSMUSG00000038773 ENSMUST00000223567 Kdm3b protein_coding Interval_77596 chr17 92701694 92702837 + 0 NA Intergenic Intergenic 16811 ENSMUSG00000117625.1 ENSMUSG00000117625 ENSMUST00000234136 Gm21018 processed_pseudogene Interval_1503 chr1 24302443 24303278 + 0 NA intron (ENSMUSG00000026141.13, intron 26 of 39) protein_coding-intron (ENSMUSG00000026141.13, intron 37 of 47) 73343 ENSMUSG00000026147.16 ENSMUSG00000026147 ENSMUST00000147902 Col9a1 protein_coding Interval_107212 chr3 104661881 104663970 + 0 NA intron (ENSMUSG00000100188.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000100188.1, intron 1 of 1) 1214 ENSMUSG00000100188.1 ENSMUSG00000100188 ENSMUST00000187838 Gm29561 lincRNA Interval_136439 chr6 54484780 54486442 + 0 NA TTS (ENSMUSG00000086040.8) protein_coding-TTS (ENSMUSG00000086040.8) -12441 ENSMUSG00000108081.1 ENSMUSG00000108081 ENSMUST00000203985 Gm44026 antisense Interval_87223 chr19 47017871 47019960 + 0 NA intron (ENSMUSG00000034336.3, intron 1 of 2) protein_coding-intron (ENSMUSG00000034336.3, intron 1 of 2) 4217 ENSMUSG00000034336.3 ENSMUSG00000034336 ENSMUST00000037636 Ina protein_coding Interval_35307 chr12 20340867 20341238 + 0 NA Intergenic Intergenic 21447 ENSMUSG00000116715.1 ENSMUSG00000116715 ENSMUST00000232034 Gm40881 unprocessed_pseudogene Interval_95147 chr2 104299173 104299621 + 0 NA intron (ENSMUSG00000068373.15, intron 1 of 20) protein_coding-intron (ENSMUSG00000068373.15, intron 1 of 20) 7823 ENSMUSG00000081721.3 ENSMUSG00000081721 ENSMUST00000120886 Gm13882 processed_pseudogene Interval_111523 chr4 22426850 22427087 + 0 NA intron (ENSMUSG00000040410.14, intron 7 of 8) protein_coding-intron (ENSMUSG00000040410.14, intron 7 of 8) 18677 ENSMUSG00000103000.1 ENSMUSG00000103000 ENSMUST00000195510 Gm37900 TEC Interval_116897 chr4 118064067 118064688 + 0 NA intron (ENSMUSG00000028538.12, intron 2 of 11) protein_coding-intron (ENSMUSG00000028538.12, intron 2 of 11) -32495 ENSMUSG00000028538.12 ENSMUSG00000028538 ENSMUST00000126336 St3gal3 protein_coding Interval_78034 chr18 7203534 7204140 + 0 NA intron (ENSMUSG00000061802.6, intron 17 of 20) protein_coding-intron (ENSMUSG00000061802.6, intron 17 of 20) -19764 ENSMUSG00000061802.6 ENSMUSG00000061802 ENSMUST00000234196 Armc4 protein_coding Interval_142629 chr6 144387696 144388191 + 0 NA intron (ENSMUSG00000041540.16, intron 4 of 6) protein_coding-intron (ENSMUSG00000041540.16, intron 4 of 13) -93282 ENSMUSG00000087157.1 ENSMUSG00000087157 ENSMUST00000156443 Sox5os2 antisense Interval_115331 chr4 96731285 96731505 + 0 NA exon (ENSMUSG00000078639.1, exon 9 of 11) protein_coding-exon (ENSMUSG00000078639.1, exon 9 of 11) 53791 ENSMUSG00000078639.1 ENSMUSG00000078639 ENSMUST00000107071 Gm12695 protein_coding Interval_17849 chr10 80381170 80382437 + 0 NA promoter-TSS (ENSMUSG00000084658.1) miRNA-promoter-TSS (ENSMUSG00000084658.1) 184 ENSMUSG00000048696.11 ENSMUSG00000048696 ENSMUST00000123141 Mex3d protein_coding Interval_133031 chr5 149411379 149412472 + 0 NA exon (ENSMUSG00000029659.16, exon 1 of 5) protein_coding-exon (ENSMUSG00000029659.16, exon 1 of 5) 153 ENSMUSG00000029659.16 ENSMUSG00000029659 ENSMUST00000201083 Medag protein_coding Interval_78032 chr18 7113368 7114200 + 0 NA intron (ENSMUSG00000061802.6, intron 20 of 20) protein_coding-intron (ENSMUSG00000061802.6, intron 20 of 20) -5601 ENSMUSG00000117360.1 ENSMUSG00000117360 ENSMUST00000234034 Gm18581 processed_pseudogene Interval_150658 chr7 113141859 113143830 + 0 NA promoter-TSS (ENSMUSG00000110009.1) lincRNA-promoter-TSS (ENSMUSG00000110009.1) -829 ENSMUSG00000110009.1 ENSMUSG00000110009 ENSMUST00000210408 4930543E12Rik lincRNA Interval_29249 chr11 82231455 82231696 + 0 NA intron (ENSMUSG00000020702.13, intron 7 of 10) protein_coding-intron (ENSMUSG00000020702.13, intron 7 of 10) 74115 ENSMUSG00000020702.13 ENSMUSG00000020702 ENSMUST00000021043 Ccl1 protein_coding Interval_162014 chr8 124424950 124425750 + 0 NA intron (ENSMUSG00000050751.14, intron 1 of 6) protein_coding-intron (ENSMUSG00000050751.14, intron 1 of 6) 14308 ENSMUSG00000050751.14 ENSMUSG00000050751 ENSMUST00000140126 Pgbd5 protein_coding Interval_166589 chr9 61135356 61136462 + 0 NA Intergenic Intergenic -2606 ENSMUSG00000110998.1 ENSMUSG00000110998 ENSMUST00000216012 I730028E13Rik lincRNA Interval_26568 chr11 58953764 58955387 + 0 NA promoter-TSS (ENSMUSG00000036964.14) protein_coding-promoter-TSS (ENSMUSG00000036964.14) -63 ENSMUSG00000080712.3 ENSMUSG00000080712 ENSMUST00000117558 H2bu1-ps processed_pseudogene Interval_44862 chr13 49173099 49173701 + 0 NA Intergenic Intergenic -16896 ENSMUSG00000037966.15 ENSMUSG00000037966 ENSMUST00000153819 Ninj1 protein_coding Interval_116988 chr4 118711357 118712194 + 0 NA exon (ENSMUSG00000046790.7, exon 2 of 2) protein_coding-exon (ENSMUSG00000046790.7, exon 2 of 2) 8252 ENSMUSG00000046790.7 ENSMUSG00000046790 ENSMUST00000061215 Olfr1341 protein_coding Interval_119673 chr4 139143127 139143730 + 0 NA Intergenic Intergenic -6769 ENSMUSG00000083238.1 ENSMUSG00000083238 ENSMUST00000119538 Hspe1-ps4 processed_pseudogene Interval_126195 chr5 82068947 82069928 + 0 NA Intergenic Intergenic 51925 ENSMUSG00000106860.1 ENSMUSG00000106860 ENSMUST00000201220 1700008H02Rik TEC Interval_39439 chr12 87413273 87413559 + 0 NA Intergenic Intergenic -7095 ENSMUSG00000114103.1 ENSMUSG00000114103 ENSMUST00000220777 Gm8557 processed_pseudogene Interval_9792 chr1 162379883 162380562 + 0 NA intron (ENSMUSG00000040265.16, intron 2 of 5) protein_coding-intron (ENSMUSG00000040265.16, intron 2 of 19) 27113 ENSMUSG00000040265.16 ENSMUSG00000040265 ENSMUST00000195768 Dnm3 protein_coding Interval_71622 chr17 24936291 24937466 + 0 NA promoter-TSS (ENSMUSG00000024163.17) protein_coding-promoter-TSS (ENSMUSG00000024163.17) 99 ENSMUSG00000024163.17 ENSMUSG00000024163 ENSMUST00000148360 Mapk8ip3 protein_coding Interval_31272 chr11 99259066 99260084 + 0 NA Intergenic Intergenic -20700 ENSMUSG00000035849.14 ENSMUSG00000035849 ENSMUST00000154622 Krt222 protein_coding Interval_57415 chr15 10661754 10662612 + 0 NA intron (ENSMUSG00000022246.14, intron 2 of 16) protein_coding-intron (ENSMUSG00000022246.14, intron 2 of 17) 51915 ENSMUSG00000022246.14 ENSMUSG00000022246 ENSMUST00000227366 Rai14 protein_coding Interval_94803 chr2 94465760 94466029 + 0 NA Intergenic Intergenic -27758 ENSMUSG00000027193.12 ENSMUSG00000027193 ENSMUST00000150930 Api5 protein_coding Interval_117833 chr4 126487322 126488616 + 0 NA Intergenic Intergenic -10670 ENSMUSG00000082381.1 ENSMUSG00000082381 ENSMUST00000117115 Gm12928 processed_pseudogene Interval_69346 chr16 92377855 92378597 + 0 NA intron (ENSMUSG00000116693.1, intron 2 of 2) lincRNA-intron (ENSMUSG00000116693.1, intron 2 of 2) 4457 ENSMUSG00000116693.1 ENSMUSG00000116693 ENSMUST00000232607 Gm29805 lincRNA Interval_20495 chr10 117939687 117939954 + 0 NA intron (ENSMUSG00000112500.1, intron 3 of 3) lincRNA-intron (ENSMUSG00000112500.1, intron 3 of 3) 14361 ENSMUSG00000112500.1 ENSMUSG00000112500 ENSMUST00000217950 4933411E08Rik lincRNA Interval_41678 chr12 117663458 117664111 + 0 NA intron (ENSMUSG00000041992.9, intron 1 of 17) protein_coding-intron (ENSMUSG00000041992.9, intron 11 of 27) -25172 ENSMUSG00000041992.9 ENSMUSG00000041992 ENSMUST00000222035 Rapgef5 protein_coding Interval_51918 chr14 33933486 33933750 + 0 NA intron (ENSMUSG00000021943.7, intron 2 of 2) protein_coding-intron (ENSMUSG00000021943.7, intron 2 of 2) -7421 ENSMUSG00000072625.1 ENSMUSG00000072625 ENSMUST00000100720 Gdf2 protein_coding Interval_48621 chr13 100700207 100700380 + 0 NA Intergenic Intergenic 30576 ENSMUSG00000048924.14 ENSMUSG00000048924 ENSMUST00000057325 Ccdc125 protein_coding Interval_73641 chr17 42192470 42192690 + 0 NA Intergenic Intergenic -123409 ENSMUSG00000042256.5 ENSMUSG00000042256 ENSMUST00000232968 Ptchd4 protein_coding Interval_67426 chr16 48579427 48579880 + 0 NA intron (ENSMUSG00000022652.7, intron 17 of 26) protein_coding-intron (ENSMUSG00000022652.7, intron 17 of 26) 100021 ENSMUSG00000022652.7 ENSMUSG00000022652 ENSMUST00000232195 Morc1 protein_coding Interval_173662 chrX 101630851 101631193 + 0 NA Intergenic Intergenic -9118 ENSMUSG00000034160.13 ENSMUSG00000034160 ENSMUST00000147635 Ogt protein_coding Interval_165221 chr9 45440703 45441203 + 0 NA intron (ENSMUSG00000032087.11, intron 1 of 32) protein_coding-intron (ENSMUSG00000032087.11, intron 1 of 32) -9223 ENSMUSG00000097074.2 ENSMUSG00000097074 ENSMUST00000215652 4833428L15Rik antisense Interval_23271 chr11 21084356 21084587 + 0 NA Intergenic Intergenic -6820 ENSMUSG00000020134.13 ENSMUSG00000020134 ENSMUST00000101477 Peli1 protein_coding Interval_34058 chr11 120236775 120237847 + 0 NA TTS (ENSMUSG00000039741.15) protein_coding-TTS (ENSMUSG00000039741.15) -1189 ENSMUSG00000085501.1 ENSMUSG00000085501 ENSMUST00000136542 Gm11772 antisense Interval_158544 chr8 84363301 84364693 + 0 NA intron (ENSMUSG00000034656.18, intron 2 of 48) protein_coding-intron (ENSMUSG00000034656.18, intron 2 of 48) 16584 ENSMUSG00000064392.1 ENSMUSG00000064392 ENSMUST00000082458 Gm23626 snoRNA Interval_124821 chr5 55646648 55647534 + 0 NA Intergenic Intergenic -5858 ENSMUSG00000105186.1 ENSMUSG00000105186 ENSMUST00000199438 Gm43778 TEC Interval_14112 chr10 27616466 27617683 + 0 NA promoter-TSS (ENSMUSG00000019899.17) protein_coding-promoter-TSS (ENSMUSG00000019899.17) -1746 ENSMUSG00000103931.1 ENSMUSG00000103931 ENSMUST00000192114 Gm36962 TEC Interval_88265 chr19 61320667 61321779 + 0 NA Intergenic Intergenic -15943 ENSMUSG00000118197.1 ENSMUSG00000118197 ENSMUST00000237261 Gm20762 processed_pseudogene Interval_168506 chr9 82836160 82836477 + 0 NA intron (ENSMUSG00000032251.12, intron 1 of 2) protein_coding-intron (ENSMUSG00000032251.12, intron 1 of 2) 6778 ENSMUSG00000032251.12 ENSMUSG00000032251 ENSMUST00000034783 Irak1bp1 protein_coding Interval_49635 chr13 113705473 113707027 + 0 NA Intergenic Intergenic 33932 ENSMUSG00000114417.1 ENSMUSG00000114417 ENSMUST00000223766 Gm34586 lincRNA Interval_90856 chr2 32990296 32990711 + 0 NA intron (ENSMUSG00000038860.15, intron 28 of 29) protein_coding-intron (ENSMUSG00000038860.15, intron 26 of 27) -8432 ENSMUSG00000026791.14 ENSMUSG00000026791 ENSMUST00000123643 Slc2a8 protein_coding Interval_108317 chr3 123628969 123629430 + 0 NA intron (ENSMUSG00000027977.15, intron 3 of 13) protein_coding-intron (ENSMUSG00000027977.15, intron 2 of 12) 58773 ENSMUSG00000104860.1 ENSMUSG00000104860 ENSMUST00000196470 Gm42510 TEC Interval_7330 chr1 129127686 129127909 + 0 NA Intergenic Intergenic -155310 ENSMUSG00000103742.1 ENSMUSG00000103742 ENSMUST00000195110 Gm38240 TEC Interval_77931 chr18 5711177 5712210 + 0 NA intron (ENSMUSG00000024238.15, intron 2 of 4) protein_coding-intron (ENSMUSG00000024238.15, intron 2 of 7) 97220 ENSMUSG00000080543.1 ENSMUSG00000080543 ENSMUST00000116893 Gm22709 miRNA Interval_106127 chr3 93443527 93445725 + 0 NA exon (ENSMUSG00000052415.5, exon 2 of 2) protein_coding-exon (ENSMUSG00000052415.5, exon 2 of 2) 2296 ENSMUSG00000052415.5 ENSMUSG00000052415 ENSMUST00000064257 Tchh protein_coding Interval_74627 chr17 53935889 53937349 + 0 NA Intergenic Intergenic 5486 ENSMUSG00000105147.1 ENSMUSG00000105147 ENSMUST00000199192 Ckb-ps1 processed_pseudogene Interval_113752 chr4 58199885 58200184 + 0 NA intron (ENSMUSG00000028369.15, intron 1 of 4) protein_coding-intron (ENSMUSG00000028369.15, intron 1 of 47) 6578 ENSMUSG00000028369.15 ENSMUSG00000028369 ENSMUST00000146329 Svep1 protein_coding Interval_161154 chr8 117847389 117848341 + 0 NA Intergenic Intergenic 45803 ENSMUSG00000074065.4 ENSMUSG00000074065 ENSMUST00000098368 Gm10617 pseudogene Interval_40312 chr12 103511397 103512055 + 0 NA Intergenic Intergenic 28284 ENSMUSG00000113383.1 ENSMUSG00000113383 ENSMUST00000221223 Gm47267 lincRNA Interval_163544 chr9 22012896 22013214 + 0 NA exon (ENSMUSG00000003402.14, exon 17 of 18) protein_coding-exon (ENSMUSG00000003402.14, exon 17 of 18) 10249 ENSMUSG00000003402.14 ENSMUSG00000003402 ENSMUST00000214565 Prkcsh protein_coding Interval_159269 chr8 92640137 92640479 + 0 NA Intergenic Intergenic -34518 ENSMUSG00000031738.14 ENSMUSG00000031738 ENSMUST00000167261 Irx6 protein_coding Interval_103402 chr3 41285087 41285255 + 0 NA TTS (ENSMUSG00000106000.1) lincRNA-TTS (ENSMUSG00000106000.1) 5419 ENSMUSG00000106000.1 ENSMUSG00000106000 ENSMUST00000197066 Gm16508 lincRNA Interval_68095 chr16 64999964 65000559 + 0 NA intron (ENSMUSG00000050783.5, intron 2 of 2) protein_coding-intron (ENSMUSG00000050783.5, intron 2 of 2) -81177 ENSMUSG00000116811.1 ENSMUSG00000116811 ENSMUST00000232275 Gm16385 processed_pseudogene Interval_12339 chr1 192228387 192229053 + 0 NA intron (ENSMUSG00000058248.12, intron 3 of 10) protein_coding-intron (ENSMUSG00000058248.12, intron 3 of 10) 91375 ENSMUSG00000097316.2 ENSMUSG00000097316 ENSMUST00000195083 Gm10516 antisense Interval_88330 chr2 3842308 3842930 + 0 NA Intergenic Intergenic -12411 ENSMUSG00000085656.1 ENSMUSG00000085656 ENSMUST00000141222 Gm13180 lincRNA Interval_138480 chr6 88548479 88549337 + 0 NA intron (ENSMUSG00000033182.12, intron 4 of 4) protein_coding-intron (ENSMUSG00000033182.12, intron 5 of 5) 29895 ENSMUSG00000107698.1 ENSMUSG00000107698 ENSMUST00000203376 Gm44430 TEC Interval_39816 chr12 98697915 98698971 + 0 NA intron (ENSMUSG00000021009.15, intron 10 of 13) protein_coding-intron (ENSMUSG00000021009.15, intron 10 of 18) -14693 ENSMUSG00000021009.15 ENSMUSG00000021009 ENSMUST00000222071 Ptpn21 protein_coding Interval_118834 chr4 133944158 133944578 + 0 NA Intergenic Intergenic 23523 ENSMUSG00000003038.15 ENSMUSG00000003038 ENSMUST00000136859 Hmgn2 protein_coding Interval_118435 chr4 131507207 131508496 + 0 NA Intergenic Intergenic 20654 ENSMUSG00000078531.3 ENSMUSG00000078531 ENSMUST00000149942 Gm831 lincRNA Interval_32334 chr11 107027497 107028630 + 0 NA promoter-TSS (ENSMUSG00000078607.6) protein_coding-promoter-TSS (ENSMUSG00000078607.6) -160 ENSMUSG00000078607.6 ENSMUSG00000078607 ENSMUST00000106767 1810010H24Rik protein_coding Interval_81263 chr18 56883984 56884400 + 0 NA intron (ENSMUSG00000032656.14, intron 1 of 2) protein_coding-intron (ENSMUSG00000032656.14, intron 1 of 4) 31896 ENSMUSG00000117917.1 ENSMUSG00000117917 ENSMUST00000237269 Gm18087 processed_pseudogene Interval_152596 chr7 134960767 134961113 + 0 NA intron (ENSMUSG00000058325.6, intron 27 of 29) protein_coding-intron (ENSMUSG00000058325.6, intron 27 of 51) -22662 ENSMUSG00000073805.5 ENSMUSG00000073805 ENSMUST00000210826 Insyn2a protein_coding Interval_60134 chr15 66093208 66093983 + 0 NA intron (ENSMUSG00000056258.9, intron 1 of 14) protein_coding-intron (ENSMUSG00000056258.9, intron 1 of 14) 19043 ENSMUSG00000099013.1 ENSMUSG00000099013 ENSMUST00000184492 Gm27153 antisense Interval_24948 chr11 41851795 41852498 + 0 NA intron (ENSMUSG00000087306.7, intron 3 of 8) processed_transcript-intron (ENSMUSG00000087306.7, intron 3 of 8) -62327 ENSMUSG00000084293.1 ENSMUSG00000084293 ENSMUST00000119666 Gm12143 processed_pseudogene Interval_42805 chr13 19779809 19780277 + 0 NA intron (ENSMUSG00000053101.3, intron 2 of 4) protein_coding-intron (ENSMUSG00000053101.3, intron 2 of 4) -40696 ENSMUSG00000113542.1 ENSMUSG00000113542 ENSMUST00000223330 Gm19154 processed_pseudogene Interval_33524 chr11 117031005 117031777 + 0 NA Intergenic Intergenic 8797 ENSMUSG00000086902.7 ENSMUSG00000086902 ENSMUST00000152401 Gm11728 lincRNA Interval_143097 chr6 149323679 149324527 + 0 NA promoter-TSS (ENSMUSG00000032712.16) protein_coding-promoter-TSS (ENSMUSG00000032712.16) 12687 ENSMUSG00000032712.16 ENSMUSG00000032712 ENSMUST00000189837 Resf1 protein_coding Interval_145786 chr7 38259494 38260036 + 0 NA Intergenic Intergenic 11562 ENSMUSG00000030423.7 ENSMUSG00000030423 ENSMUST00000206045 Pop4 protein_coding Interval_32257 chr11 106548352 106548936 + 0 NA intron (ENSMUSG00000040548.16, intron 2 of 10) protein_coding-intron (ENSMUSG00000040548.16, intron 3 of 11) 18466 ENSMUSG00000040548.16 ENSMUSG00000040548 ENSMUST00000153870 Tex2 protein_coding Interval_6565 chr1 117051013 117051761 + 0 NA Intergenic Intergenic 248404 ENSMUSG00000094429.2 ENSMUSG00000094429 ENSMUST00000179777 Gm19965 protein_coding Interval_85876 chr19 32623869 32624231 + 0 NA intron (ENSMUSG00000024899.7, intron 1 of 11) protein_coding-intron (ENSMUSG00000024899.7, intron 1 of 12) 4045 ENSMUSG00000024899.7 ENSMUSG00000024899 ENSMUST00000025833 Papss2 protein_coding Interval_173274 chrX 75795859 75797126 + 0 NA exon (ENSMUSG00000016382.15, exon 10 of 16) protein_coding-exon (ENSMUSG00000016382.15, exon 10 of 16) 46693 ENSMUSG00000016382.15 ENSMUSG00000016382 ENSMUST00000126599 Pls3 protein_coding Interval_142545 chr6 143183819 143184182 + 0 NA intron (ENSMUSG00000030275.6, intron 2 of 6) protein_coding-intron (ENSMUSG00000030275.6, intron 2 of 7) 16746 ENSMUSG00000030275.6 ENSMUSG00000030275 ENSMUST00000205256 Etnk1 protein_coding Interval_11916 chr1 187098559 187099193 + 0 NA intron (ENSMUSG00000026611.17, intron 8 of 10) protein_coding-intron (ENSMUSG00000026611.17, intron 8 of 9) -7716 ENSMUSG00000107163.1 ENSMUSG00000107163 ENSMUST00000201682 Gm43496 TEC Interval_28718 chr11 77903607 77907300 + 0 NA Intergenic Intergenic -20909 ENSMUSG00000017453.4 ENSMUSG00000017453 ENSMUST00000155401 Pipox protein_coding Interval_89739 chr2 25147597 25148834 + 0 NA exon (ENSMUSG00000118563.1, exon 9 of 14) unitary_pseudogene-exon (ENSMUSG00000118563.1, exon 9 of 14) -2892 ENSMUSG00000087028.7 ENSMUSG00000087028 ENSMUST00000149619 Gm13387 lincRNA Interval_168386 chr9 79899362 79899654 + 0 NA intron (ENSMUSG00000034898.17, intron 1 of 1) protein_coding-intron (ENSMUSG00000034898.17, intron 1 of 5) -13692 ENSMUSG00000092581.1 ENSMUSG00000092581 ENSMUST00000172721 Gm3211 processed_transcript Interval_110255 chr3 154945325 154946099 + 0 NA intron (ENSMUSG00000040086.13, intron 11 of 22) protein_coding-intron (ENSMUSG00000040086.13, intron 11 of 24) 24416 ENSMUSG00000102238.1 ENSMUSG00000102238 ENSMUST00000195610 Gm37890 TEC Interval_84410 chr19 10699406 10699749 + 0 NA intron (ENSMUSG00000048832.9, intron 1 of 4) protein_coding-intron (ENSMUSG00000048832.9, intron 1 of 4) 10814 ENSMUSG00000048832.9 ENSMUSG00000048832 ENSMUST00000235921 Vps37c protein_coding Interval_131851 chr5 140366412 140367142 + 0 NA intron (ENSMUSG00000029560.12, intron 1 of 10) protein_coding-intron (ENSMUSG00000029560.12, intron 1 of 10) 333 ENSMUSG00000029560.12 ENSMUSG00000029560 ENSMUST00000196020 Snx8 protein_coding Interval_100119 chr2 167173499 167173859 + 0 NA intron (ENSMUSG00000050556.9, intron 1 of 1) protein_coding-intron (ENSMUSG00000050556.9, intron 2 of 2) -15023 ENSMUSG00000085151.7 ENSMUSG00000085151 ENSMUST00000147446 1110018N20Rik processed_transcript Interval_121333 chr4 155049490 155050284 + 0 NA intron (ENSMUSG00000029055.17, intron 1 of 6) protein_coding-intron (ENSMUSG00000029055.17, intron 2 of 3) 4865 ENSMUSG00000029055.17 ENSMUSG00000029055 ENSMUST00000126098 Plch2 protein_coding Interval_73698 chr17 42863597 42863845 + 0 NA intron (ENSMUSG00000061665.7, intron 1 of 17) protein_coding-intron (ENSMUSG00000061665.7, intron 1 of 17) -32691 ENSMUSG00000061665.7 ENSMUSG00000061665 ENSMUST00000233626 Cd2ap protein_coding Interval_4374 chr1 73363275 73364616 + 0 NA Intergenic Intergenic -28301 ENSMUSG00000098697.1 ENSMUSG00000098697 ENSMUST00000183977 Gm27315 misc_RNA Interval_36902 chr12 55067747 55067941 + 0 NA promoter-TSS (ENSMUSG00000113467.1) processed_pseudogene-promoter-TSS (ENSMUSG00000113467.1) 357 ENSMUSG00000113137.1 ENSMUSG00000113137 ENSMUST00000220953 Gm7511 processed_pseudogene Interval_16667 chr10 66935809 66936072 + 0 NA Intergenic Intergenic 15638 ENSMUSG00000097921.2 ENSMUSG00000097921 ENSMUST00000181018 Gm26576 lincRNA Interval_46327 chr13 63974950 63975184 + 0 NA Intergenic Intergenic -28546 ENSMUSG00000113340.1 ENSMUSG00000113340 ENSMUST00000220900 Gm7695 processed_pseudogene Interval_89909 chr2 26394590 26394959 + 0 NA TTS (ENSMUSG00000026926.14) protein_coding-TTS (ENSMUSG00000026926.14) 3847 ENSMUSG00000026926.14 ENSMUSG00000026926 ENSMUST00000139535 Pmpca protein_coding Interval_66359 chr16 33370395 33371386 + 0 NA Intergenic Intergenic 9785 ENSMUSG00000097318.2 ENSMUSG00000097318 ENSMUST00000180923 1700007L15Rik bidirectional_promoter_lncRNA Interval_59664 chr15 57733216 57733474 + 0 NA intron (ENSMUSG00000071757.10, intron 1 of 2) protein_coding-intron (ENSMUSG00000071757.10, intron 1 of 3) 5321 ENSMUSG00000047807.10 ENSMUSG00000047807 ENSMUST00000176703 9330154K18Rik antisense Interval_171525 chr9 119023814 119024106 + 0 NA intron (ENSMUSG00000047409.13, intron 3 of 5) protein_coding-intron (ENSMUSG00000047409.13, intron 3 of 7) -7836 ENSMUSG00000065513.1 ENSMUSG00000065513 ENSMUST00000083579 Mir26a-1 miRNA Interval_60732 chr15 76423153 76423821 + 0 NA exon (ENSMUSG00000022558.16, exon 13 of 39) protein_coding-exon (ENSMUSG00000022558.16, exon 13 of 39) -9727 ENSMUSG00000099260.1 ENSMUSG00000099260 ENSMUST00000183412 Mir6954 miRNA Interval_172309 chrX 12851835 12852030 + 0 NA Intergenic Intergenic 18430 ENSMUSG00000077858.1 ENSMUSG00000077858 ENSMUST00000104666 Gm25063 miRNA Interval_74178 chr17 46919667 46919990 + 0 NA exon (ENSMUSG00000023978.5, exon 2 of 3) protein_coding-exon (ENSMUSG00000023978.5, exon 2 of 3) 9350 ENSMUSG00000023978.5 ENSMUSG00000023978 ENSMUST00000162469 Prph2 protein_coding Interval_164568 chr9 38874361 38875375 + 0 NA Intergenic Intergenic -2258 ENSMUSG00000064333.2 ENSMUSG00000064333 ENSMUST00000078289 Olfr926 protein_coding Interval_120028 chr4 141432639 141433904 + 0 NA exon (ENSMUSG00000070637.2, exon 2 of 2) protein_coding-exon (ENSMUSG00000070637.2, exon 2 of 2) 2834 ENSMUSG00000070637.2 ENSMUSG00000070637 ENSMUST00000094544 Srarp protein_coding Interval_48967 chr13 106281435 106281741 + 0 NA Intergenic Intergenic -83817 ENSMUSG00000108515.1 ENSMUSG00000108515 ENSMUST00000205589 Olfr717-ps1 unprocessed_pseudogene Interval_66637 chr16 35787120 35787721 + 0 NA intron (ENSMUSG00000022849.5, intron 2 of 2) protein_coding-intron (ENSMUSG00000022849.5, intron 2 of 8) 17013 ENSMUSG00000022849.5 ENSMUSG00000022849 ENSMUST00000023555 Hspbap1 protein_coding Interval_110996 chr4 11095606 11096871 + 0 NA Intergenic Intergenic -20055 ENSMUSG00000050323.14 ENSMUSG00000050323 ENSMUST00000141019 Ndufaf6 protein_coding Interval_47412 chr13 83713297 83714189 + 0 NA Intergenic Intergenic 15839 ENSMUSG00000097265.1 ENSMUSG00000097265 ENSMUST00000181705 Gm26803 lincRNA Interval_124610 chr5 52348251 52348513 + 0 NA Intergenic Intergenic -5160 ENSMUSG00000088981.1 ENSMUSG00000088981 ENSMUST00000158356 Gm25601 snRNA Interval_18209 chr10 83709216 83712188 + 0 NA Intergenic Intergenic -27207 ENSMUSG00000087651.3 ENSMUSG00000087651 ENSMUST00000218623 1500009L16Rik protein_coding Interval_51775 chr14 32123860 32125841 + 0 NA Intergenic Intergenic -22737 ENSMUSG00000021907.13 ENSMUSG00000021907 ENSMUST00000130397 Msmb protein_coding Interval_51069 chr14 21981352 21981797 + 0 NA Intergenic Intergenic 8027 ENSMUSG00000039081.10 ENSMUSG00000039081 ENSMUST00000043409 Zfp503 protein_coding Interval_114787 chr4 85264944 85265667 + 0 NA intron (ENSMUSG00000028488.15, intron 1 of 7) protein_coding-intron (ENSMUSG00000028488.15, intron 1 of 8) -19543 ENSMUSG00000081862.1 ENSMUSG00000081862 ENSMUST00000121508 Gm12413 processed_pseudogene Interval_120979 chr4 152036402 152036781 + 0 NA intron (ENSMUSG00000028950.3, intron 1 of 5) protein_coding-intron (ENSMUSG00000028950.3, intron 1 of 5) 1977 ENSMUSG00000028950.3 ENSMUSG00000028950 ENSMUST00000030792 Tas1r1 protein_coding Interval_15794 chr10 56876920 56877209 + 0 NA Intergenic Intergenic 37701 ENSMUSG00000112837.1 ENSMUSG00000112837 ENSMUST00000217761 Gm48053 lincRNA Interval_139365 chr6 99485153 99486115 + 0 NA promoter-TSS (ENSMUSG00000088699.1) miRNA-promoter-TSS (ENSMUSG00000088699.1) -932 ENSMUSG00000088699.1 ENSMUSG00000088699 ENSMUST00000158074 Gm22328 miRNA Interval_67440 chr16 48640578 48641310 + 0 NA Intergenic Intergenic 109504 ENSMUSG00000116640.1 ENSMUSG00000116640 ENSMUST00000231404 Gm8670 processed_pseudogene Interval_48865 chr13 104154903 104155824 + 0 NA intron (ENSMUSG00000021711.17, intron 5 of 12) protein_coding-intron (ENSMUSG00000021711.17, intron 5 of 12) 23044 ENSMUSG00000021711.17 ENSMUSG00000021711 ENSMUST00000142745 Trappc13 protein_coding Interval_77411 chr17 88537816 88538024 + 0 NA intron (ENSMUSG00000034709.8, intron 1 of 1) protein_coding-intron (ENSMUSG00000034709.8, intron 1 of 21) 4893 ENSMUSG00000103075.1 ENSMUSG00000103075 ENSMUST00000195386 Gm38109 TEC Interval_88970 chr2 13767321 13768816 + 0 NA intron (ENSMUSG00000003418.11, intron 2 of 7) protein_coding-intron (ENSMUSG00000003418.11, intron 2 of 7) 25225 ENSMUSG00000003418.11 ENSMUSG00000003418 ENSMUST00000150781 St8sia6 protein_coding Interval_141568 chr6 129365853 129366418 + 0 NA TTS (ENSMUSG00000053063.11) protein_coding-TTS (ENSMUSG00000053063.11) 19739 ENSMUSG00000030158.12 ENSMUSG00000030158 ENSMUST00000112082 Clec12b protein_coding Interval_103748 chr3 52316511 52317362 + 0 NA intron (ENSMUSG00000044167.6, intron 1 of 2) protein_coding-intron (ENSMUSG00000044167.6, intron 1 of 2) 34695 ENSMUSG00000102844.1 ENSMUSG00000102844 ENSMUST00000193915 Gm38034 TEC Interval_40459 chr12 105016421 105017033 + 0 NA Intergenic Intergenic -4632 ENSMUSG00000113995.1 ENSMUSG00000113995 ENSMUST00000222271 Gm47648 lincRNA Interval_150156 chr7 107445963 107446986 + 0 NA intron (ENSMUSG00000062542.11, intron 3 of 6) protein_coding-intron (ENSMUSG00000062542.11, intron 3 of 6) -57588 ENSMUSG00000062542.11 ENSMUSG00000062542 ENSMUST00000127444 Syt9 protein_coding Interval_102459 chr3 26906697 26906987 + 0 NA intron (ENSMUSG00000039335.11, intron 6 of 9) protein_coding-intron (ENSMUSG00000039335.11, intron 6 of 10) -105922 ENSMUSG00000103712.1 ENSMUSG00000103712 ENSMUST00000194574 Gm37659 processed_pseudogene Interval_92133 chr2 53813616 53813798 + 0 NA Intergenic Intergenic -112752 ENSMUSG00000088628.1 ENSMUSG00000088628 ENSMUST00000158003 Gm23315 snoRNA Interval_38736 chr12 81726453 81727044 + 0 NA intron (ENSMUSG00000042724.8, intron 8 of 10) protein_coding-intron (ENSMUSG00000042724.8, intron 8 of 10) -6696 ENSMUSG00000113184.1 ENSMUSG00000113184 ENSMUST00000221438 Gm49654 lincRNA Interval_136043 chr6 50293952 50294602 + 0 NA TTS (ENSMUSG00000029822.15) protein_coding-TTS (ENSMUSG00000029822.15) -32302 ENSMUSG00000029821.15 ENSMUSG00000029821 ENSMUST00000204700 Gsdme protein_coding Interval_153246 chr7 142852316 142852520 + 0 NA TTS (ENSMUSG00000073781.4) lincRNA-TTS (ENSMUSG00000073781.4) 5164 ENSMUSG00000108952.1 ENSMUSG00000108952 ENSMUST00000207692 Gm39117 lincRNA Interval_92915 chr2 68470885 68472699 + 0 NA exon (ENSMUSG00000027030.15, exon 1 of 18) protein_coding-exon (ENSMUSG00000027030.15, exon 1 of 18) -4290 ENSMUSG00000085182.1 ENSMUSG00000085182 ENSMUST00000153354 Gm13596 antisense Interval_102949 chr3 33249382 33250584 + 0 NA Intergenic Intergenic 10837 ENSMUSG00000098622.1 ENSMUSG00000098622 ENSMUST00000183415 Gm27974 miRNA Interval_100765 chr2 172423549 172423977 + 0 NA intron (ENSMUSG00000074570.14, intron 3 of 5) protein_coding-intron (ENSMUSG00000074570.14, intron 3 of 4) 16797 ENSMUSG00000087633.1 ENSMUSG00000087633 ENSMUST00000138288 Gm14455 antisense Interval_108262 chr3 123112642 123114115 + 0 NA promoter-TSS (ENSMUSG00000050315.14) protein_coding-promoter-TSS (ENSMUSG00000050315.14) -28910 ENSMUSG00000106012.1 ENSMUSG00000106012 ENSMUST00000196387 Gm43744 processed_pseudogene Interval_164377 chr9 36521823 36522207 + 0 NA Intergenic Intergenic -15917 ENSMUSG00000099274.1 ENSMUSG00000099274 ENSMUST00000183745 Gm27218 processed_pseudogene Interval_131799 chr5 139956815 139958211 + 0 NA intron (ENSMUSG00000048988.8, intron 1 of 1) protein_coding-intron (ENSMUSG00000048988.8, intron 1 of 1) 6278 ENSMUSG00000106090.1 ENSMUSG00000106090 ENSMUST00000196164 Gm43704 processed_pseudogene Interval_138450 chr6 88296904 88297121 + 0 NA TTS (ENSMUSG00000033216.9) protein_coding-TTS (ENSMUSG00000033216.9) 56594 ENSMUSG00000107472.1 ENSMUSG00000107472 ENSMUST00000203631 Gm44265 sense_intronic Interval_72450 chr17 29864585 29864821 + 0 NA intron (ENSMUSG00000043557.16, intron 1 of 4) protein_coding-intron (ENSMUSG00000043557.16, intron 1 of 15) -24722 ENSMUSG00000043557.16 ENSMUSG00000043557 ENSMUST00000167102 Mdga1 protein_coding Interval_47823 chr13 93547071 93548209 + 0 NA Intergenic Intergenic -47903 ENSMUSG00000021690.10 ENSMUSG00000021690 ENSMUST00000220513 Jmy protein_coding Interval_3984 chr1 65422381 65422793 + 0 NA promoter-TSS (ENSMUSG00000099383.1) unprocessed_pseudogene-promoter-TSS (ENSMUSG00000099383.1) -650 ENSMUSG00000099383.1 ENSMUSG00000099383 ENSMUST00000188586 Gm28925 unprocessed_pseudogene Interval_41123 chr12 111330078 111330500 + 0 NA intron (ENSMUSG00000021279.5, intron 5 of 36) protein_coding-intron (ENSMUSG00000021279.5, intron 5 of 36) -15752 ENSMUSG00000021279.5 ENSMUSG00000021279 ENSMUST00000222196 Cdc42bpb protein_coding Interval_161274 chr8 119436810 119437283 + 0 NA promoter-TSS (ENSMUSG00000074063.10) protein_coding-promoter-TSS (ENSMUSG00000074063.10) -103 ENSMUSG00000074063.10 ENSMUSG00000074063 ENSMUST00000144381 Osgin1 protein_coding Interval_36505 chr12 46772057 46772440 + 0 NA intron (ENSMUSG00000021047.7, intron 3 of 3) protein_coding-intron (ENSMUSG00000021047.7, intron 2 of 4) 39260 ENSMUSG00000112483.1 ENSMUSG00000112483 ENSMUST00000218845 Gm48542 TEC Interval_129041 chr5 117055109 117055789 + 0 NA Intergenic Intergenic -3363 ENSMUSG00000107327.1 ENSMUSG00000107327 ENSMUST00000201054 Gm7478 processed_pseudogene Interval_18322 chr10 84903405 84904256 + 0 NA intron (ENSMUSG00000020037.15, intron 14 of 14) protein_coding-intron (ENSMUSG00000020037.15, intron 17 of 17) -33563 ENSMUSG00000035620.15 ENSMUSG00000035620 ENSMUST00000214820 Ric8b protein_coding Interval_113051 chr4 47237203 47237668 + 0 NA intron (ENSMUSG00000028339.17, intron 1 of 2) protein_coding-intron (ENSMUSG00000028339.17, intron 2 of 38) -21100 ENSMUSG00000028339.17 ENSMUSG00000028339 ENSMUST00000107730 Col15a1 protein_coding Interval_151884 chr7 127295901 127297150 + 0 NA promoter-TSS (ENSMUSG00000030830.18) protein_coding-promoter-TSS (ENSMUSG00000030830.18) -905 ENSMUSG00000030830.18 ENSMUSG00000030830 ENSMUST00000118405 Itgal protein_coding Interval_28471 chr11 76201564 76202748 + 0 NA promoter-TSS (ENSMUSG00000069808.13) protein_coding-promoter-TSS (ENSMUSG00000069808.13) 55 ENSMUSG00000069808.13 ENSMUSG00000069808 ENSMUST00000169560 Fam57a protein_coding Interval_88680 chr2 9663266 9663505 + 0 NA Intergenic Intergenic -32044 ENSMUSG00000104276.1 ENSMUSG00000104276 ENSMUST00000191950 Gm37866 TEC Interval_67328 chr16 46361961 46362296 + 0 NA Intergenic Intergenic 134644 ENSMUSG00000022656.15 ENSMUSG00000022656 ENSMUST00000133935 Nectin3 protein_coding Interval_169456 chr9 97578895 97579119 + 0 NA intron (ENSMUSG00000032452.12, intron 4 of 16) protein_coding-intron (ENSMUSG00000032452.12, intron 4 of 17) -139380 ENSMUSG00000077208.1 ENSMUSG00000077208 ENSMUST00000104020 Gm25607 snoRNA Interval_170547 chr9 108620504 108621741 + 0 NA intron (ENSMUSG00000064145.12, intron 1 of 5) protein_coding-intron (ENSMUSG00000064145.12, intron 3 of 15) 9022 ENSMUSG00000064145.12 ENSMUSG00000064145 ENSMUST00000195623 Arih2 protein_coding Interval_89817 chr2 25639851 25640653 + 0 NA Intergenic Intergenic -3845 ENSMUSG00000118473.1 ENSMUSG00000118473 ENSMUST00000238611 Lcn15 unitary_pseudogene Interval_167499 chr9 70072382 70073178 + 0 NA promoter-TSS (ENSMUSG00000111043.1) lincRNA-promoter-TSS (ENSMUSG00000111043.1) -143 ENSMUSG00000111043.1 ENSMUSG00000111043 ENSMUST00000215316 2210414F02Rik lincRNA Interval_102475 chr3 27087933 27088327 + 0 NA Intergenic Intergenic -20852 ENSMUSG00000087742.1 ENSMUSG00000087742 ENSMUST00000157117 Gm25152 snoRNA Interval_24648 chr11 35632864 35633076 + 0 NA intron (ENSMUSG00000056427.10, intron 19 of 35) protein_coding-intron (ENSMUSG00000056427.10, intron 19 of 35) 16154 ENSMUSG00000065583.1 ENSMUSG00000065583 ENSMUST00000083649 Mir218-2 miRNA Interval_116682 chr4 116638852 116639224 + 0 NA TTS (ENSMUSG00000028692.14) protein_coding-TTS (ENSMUSG00000028692.14) 10436 ENSMUSG00000028692.14 ENSMUSG00000028692 ENSMUST00000128059 Akr1a1 protein_coding Interval_109727 chr3 146348945 146350305 + 0 NA Intergenic Intergenic 25205 ENSMUSG00000105209.1 ENSMUSG00000105209 ENSMUST00000197740 Gm43334 TEC Interval_120998 chr4 152134683 152134950 + 0 NA intron (ENSMUSG00000028943.18, intron 5 of 10) protein_coding-intron (ENSMUSG00000028943.18, intron 6 of 15) 16845 ENSMUSG00000024793.14 ENSMUSG00000024793 ENSMUST00000153619 Tnfrsf25 protein_coding Interval_11222 chr1 180278585 180278805 + 0 NA Intergenic Intergenic 22266 ENSMUSG00000102923.1 ENSMUSG00000102923 ENSMUST00000192164 Gm31728 antisense Interval_115047 chr4 88845130 88845540 + 0 NA Intergenic Intergenic 3474 ENSMUSG00000070904.4 ENSMUSG00000070904 ENSMUST00000094973 Ifna4 protein_coding Interval_131654 chr5 139088285 139088843 + 0 NA intron (ENSMUSG00000025855.13, intron 3 of 6) protein_coding-intron (ENSMUSG00000025855.13, intron 4 of 10) 61437 ENSMUSG00000025855.13 ENSMUSG00000025855 ENSMUST00000130180 Prkar1b protein_coding Interval_91708 chr2 48472571 48472792 + 0 NA Intergenic Intergenic -15436 ENSMUSG00000086353.1 ENSMUSG00000086353 ENSMUST00000127672 Gm13481 lincRNA Interval_129865 chr5 122805383 122806155 + 0 NA TTS (ENSMUSG00000029472.13) protein_coding-TTS (ENSMUSG00000029472.13) 15525 ENSMUSG00000029472.13 ENSMUSG00000029472 ENSMUST00000197331 Anapc5 protein_coding Interval_40314 chr12 103531733 103533391 + 0 NA promoter-TSS (ENSMUSG00000021209.12) protein_coding-promoter-TSS (ENSMUSG00000021209.12) -48836 ENSMUSG00000021209.12 ENSMUSG00000021209 ENSMUST00000190151 Ppp4r4 protein_coding Interval_47103 chr13 75790738 75791000 + 0 NA Intergenic Intergenic -11837 ENSMUSG00000113409.1 ENSMUSG00000113409 ENSMUST00000223406 Gm8288 processed_pseudogene Interval_32244 chr11 106442458 106442812 + 0 NA intron (ENSMUSG00000020715.9, intron 2 of 10) protein_coding-intron (ENSMUSG00000020715.9, intron 2 of 21) 45217 ENSMUSG00000020715.9 ENSMUSG00000020715 ENSMUST00000106799 Ern1 protein_coding Interval_9407 chr1 156867736 156868292 + 0 NA intron (ENSMUSG00000026594.14, intron 9 of 19) protein_coding-intron (ENSMUSG00000026594.14, intron 8 of 18) 8106 ENSMUSG00000102960.1 ENSMUSG00000102960 ENSMUST00000194053 Gm37943 TEC Interval_145551 chr7 35562287 35563675 + 0 NA Intergenic Intergenic 7614 ENSMUSG00000097509.1 ENSMUSG00000097509 ENSMUST00000181932 B230322F03Rik antisense Interval_19783 chr10 108759801 108760097 + 0 NA intron (ENSMUSG00000035864.14, intron 3 of 7) protein_coding-intron (ENSMUSG00000035864.14, intron 3 of 10) -18362 ENSMUSG00000111910.1 ENSMUSG00000111910 ENSMUST00000219164 Gm47472 TEC Interval_1839 chr1 34090291 34090787 + 0 NA intron (ENSMUSG00000026131.20, intron 1 of 3) protein_coding-intron (ENSMUSG00000026131.20, intron 2 of 97) 13312 ENSMUSG00000026131.20 ENSMUSG00000026131 ENSMUST00000182507 Dst protein_coding Interval_67669 chr16 55852630 55853486 + 0 NA intron (ENSMUSG00000075033.4, intron 4 of 5) protein_coding-intron (ENSMUSG00000075033.4, intron 4 of 5) 31433 ENSMUSG00000116919.1 ENSMUSG00000116919 ENSMUST00000232524 Gm17809 processed_pseudogene Interval_80807 chr18 47363832 47364542 + 0 NA intron (ENSMUSG00000019647.16, intron 1 of 16) protein_coding-intron (ENSMUSG00000019647.16, intron 1 of 18) -30839 ENSMUSG00000019647.16 ENSMUSG00000019647 ENSMUST00000144223 Sema6a protein_coding Interval_113377 chr4 53931159 53932062 + 0 NA Intergenic Intergenic 25914 ENSMUSG00000077418.1 ENSMUSG00000077418 ENSMUST00000104230 Gm23745 snoRNA Interval_163037 chr9 14716387 14716593 + 0 NA intron (ENSMUSG00000036912.18, intron 10 of 18) protein_coding-intron (ENSMUSG00000036912.18, intron 10 of 18) -11420 ENSMUSG00000036912.18 ENSMUSG00000036912 ENSMUST00000076946 Piwil4 protein_coding Interval_174838 chrX 169302278 169302909 + 0 NA exon (ENSMUSG00000031355.16, exon 13 of 13) protein_coding-exon (ENSMUSG00000031355.16, exon 13 of 13) 7584 ENSMUSG00000099179.1 ENSMUSG00000099179 ENSMUST00000184094 Gm27980 misc_RNA Interval_134399 chr6 28319631 28320121 + 0 NA intron (ENSMUSG00000039841.14, intron 1 of 6) protein_coding-intron (ENSMUSG00000039841.14, intron 1 of 6) 43289 ENSMUSG00000083107.1 ENSMUSG00000083107 ENSMUST00000117943 Gm5303 processed_pseudogene Interval_152220 chr7 130726642 130727560 + 0 NA intron (ENSMUSG00000030852.18, intron 2 of 6) protein_coding-intron (ENSMUSG00000030852.18, intron 2 of 17) 13424 ENSMUSG00000030852.18 ENSMUSG00000030852 ENSMUST00000207230 Tacc2 protein_coding Interval_86019 chr19 34962439 34962876 + 0 NA intron (ENSMUSG00000024795.11, intron 17 of 23) protein_coding-intron (ENSMUSG00000024795.11, intron 25 of 31) -2739 ENSMUSG00000089151.1 ENSMUSG00000089151 ENSMUST00000158526 Mir1950 miRNA Interval_152368 chr7 132475123 132475586 + 0 NA intron (ENSMUSG00000030849.18, intron 2 of 6) protein_coding-intron (ENSMUSG00000030849.18, intron 2 of 6) -8304 ENSMUSG00000108858.1 ENSMUSG00000108858 ENSMUST00000209135 Gm4587 processed_pseudogene Interval_99678 chr2 164140064 164140766 + 0 NA TTS (ENSMUSG00000085538.1) antisense-TTS (ENSMUSG00000085538.1) 4712 ENSMUSG00000085538.1 ENSMUSG00000085538 ENSMUST00000149285 Gm11455 antisense Interval_67968 chr16 62119883 62120142 + 0 NA Intergenic Intergenic 22551 ENSMUSG00000116619.1 ENSMUSG00000116619 ENSMUST00000232249 Gm49615 lincRNA Interval_42453 chr13 13709904 13710109 + 0 NA intron (ENSMUSG00000019726.12, intron 2 of 10) protein_coding-intron (ENSMUSG00000019726.12, intron 36 of 52) 25915 ENSMUSG00000019726.12 ENSMUSG00000019726 ENSMUST00000221587 Lyst protein_coding Interval_14639 chr10 37397313 37397794 + 0 NA Intergenic Intergenic 55127 ENSMUSG00000111549.1 ENSMUSG00000111549 ENSMUST00000215235 Gm48172 processed_pseudogene Interval_100051 chr2 166753685 166753918 + 0 NA Intergenic Intergenic -14944 ENSMUSG00000088063.1 ENSMUSG00000088063 ENSMUST00000157438 Gm24477 snRNA Interval_88398 chr2 4760864 4761174 + 0 NA intron (ENSMUSG00000048186.14, intron 1 of 4) protein_coding-intron (ENSMUSG00000048186.14, intron 5 of 8) 43188 ENSMUSG00000048186.14 ENSMUSG00000048186 ENSMUST00000138322 Bend7 protein_coding Interval_154315 chr8 14349094 14349564 + 0 NA promoter-TSS (ENSMUSG00000106670.1) miRNA-promoter-TSS (ENSMUSG00000106670.1) -849 ENSMUSG00000106670.1 ENSMUSG00000106670 ENSMUST00000199602 Gm44347 miRNA Interval_96323 chr2 121611686 121612974 + 0 NA intron (ENSMUSG00000027238.17, intron 1 of 7) protein_coding-intron (ENSMUSG00000027238.17, intron 1 of 13) -60979 ENSMUSG00000027238.17 ENSMUSG00000027238 ENSMUST00000153704 Frmd5 protein_coding Interval_122115 chr5 17247129 17248022 + 0 NA Intergenic Intergenic -19641 ENSMUSG00000091273.1 ENSMUSG00000091273 ENSMUST00000166114 Gm6673 unprocessed_pseudogene Interval_144971 chr7 29180112 29181115 + 0 NA promoter-TSS (ENSMUSG00000030591.17) protein_coding-promoter-TSS (ENSMUSG00000030591.17) -132 ENSMUSG00000030591.17 ENSMUSG00000030591 ENSMUST00000207087 Psmd8 protein_coding Interval_112617 chr4 43593568 43593739 + 0 NA intron (ENSMUSG00000085351.1, intron 1 of 2) antisense-intron (ENSMUSG00000085351.1, intron 1 of 2) 5581 ENSMUSG00000085351.1 ENSMUSG00000085351 ENSMUST00000153232 Gm12472 antisense Interval_21901 chr11 5064793 5065808 + 0 NA promoter-TSS (ENSMUSG00000034201.13) protein_coding-promoter-TSS (ENSMUSG00000034201.13) -449 ENSMUSG00000034201.13 ENSMUSG00000034201 ENSMUST00000151936 Gas2l1 protein_coding Interval_51178 chr14 24486685 24487397 + 0 NA promoter-TSS (ENSMUSG00000025280.8) protein_coding-promoter-TSS (ENSMUSG00000025280.8) -3677 ENSMUSG00000025290.17 ENSMUSG00000025290 ENSMUST00000224699 Rps24 protein_coding Interval_99383 chr2 160483653 160484346 + 0 NA Intergenic Intergenic -99358 ENSMUSG00000078955.3 ENSMUSG00000078955 ENSMUST00000128681 Gm14222 sense_intronic Interval_40354 chr12 104218175 104218545 + 0 NA exon (ENSMUSG00000066363.12, exon 4 of 6) protein_coding-exon (ENSMUSG00000066363.12, exon 4 of 6) 3816 ENSMUSG00000066363.12 ENSMUSG00000066363 ENSMUST00000101080 Serpina3f protein_coding Interval_174745 chrX 164568681 164569336 + 0 NA Intergenic Intergenic 62681 ENSMUSG00000031384.2 ENSMUSG00000031384 ENSMUST00000033756 Asb9 protein_coding Interval_63588 chr15 102222484 102223037 + 0 NA exon (ENSMUSG00000001281.10, exon 6 of 15) protein_coding-exon (ENSMUSG00000001281.10, exon 6 of 15) 9148 ENSMUSG00000001281.10 ENSMUSG00000001281 ENSMUST00000127014 Itgb7 protein_coding Interval_17819 chr10 80260627 80262013 + 0 NA promoter-TSS (ENSMUSG00000020150.13) protein_coding-promoter-TSS (ENSMUSG00000020150.13) -166 ENSMUSG00000069565.12 ENSMUSG00000069565 ENSMUST00000151619 Dazap1 protein_coding Interval_30003 chr11 88630880 88631411 + 0 NA intron (ENSMUSG00000069769.13, intron 5 of 5) protein_coding-intron (ENSMUSG00000069769.13, intron 5 of 13) -40998 ENSMUSG00000069769.13 ENSMUSG00000069769 ENSMUST00000126293 Msi2 protein_coding Interval_126866 chr5 96160572 96163105 + 0 NA promoter-TSS (ENSMUSG00000034724.18) protein_coding-promoter-TSS (ENSMUSG00000034724.18) 152 ENSMUSG00000034724.18 ENSMUSG00000034724 ENSMUST00000154500 Cnot6l protein_coding Interval_112609 chr4 43549626 43549860 + 0 NA exon (ENSMUSG00000028465.16, exon 15 of 57) protein_coding-exon (ENSMUSG00000028465.16, exon 15 of 57) -2096 ENSMUSG00000028465.16 ENSMUSG00000028465 ENSMUST00000123985 Tln1 protein_coding Interval_121689 chr5 5322718 5323767 + 0 NA intron (ENSMUSG00000028926.15, intron 2 of 2) protein_coding-intron (ENSMUSG00000028926.15, intron 2 of 14) -11619 ENSMUSG00000104867.1 ENSMUSG00000104867 ENSMUST00000198817 Gm43728 sense_intronic Interval_51026 chr14 21658707 21659987 + 0 NA intron (ENSMUSG00000021767.19, intron 11 of 15) protein_coding-intron (ENSMUSG00000021767.19, intron 12 of 16) 43755 ENSMUSG00000063821.6 ENSMUSG00000063821 ENSMUST00000224735 Dupd1 protein_coding Interval_127466 chr5 104126107 104127622 + 0 NA Intergenic Intergenic -13425 ENSMUSG00000029309.7 ENSMUSG00000029309 ENSMUST00000199947 Sparcl1 protein_coding Interval_10267 chr1 167691979 167692240 + 0 NA exon (ENSMUSG00000026686.14, exon 2 of 8) protein_coding-exon (ENSMUSG00000026686.14, exon 2 of 8) 2872 ENSMUSG00000026686.14 ENSMUSG00000026686 ENSMUST00000028003 Lmx1a protein_coding Interval_142837 chr6 146328294 146328657 + 0 NA intron (ENSMUSG00000030287.15, intron 27 of 55) protein_coding-intron (ENSMUSG00000030287.15, intron 28 of 56) -47942 ENSMUSG00000107743.1 ENSMUSG00000107743 ENSMUST00000204247 Gm44087 TEC Interval_161611 chr8 121566685 121567066 + 0 NA intron (ENSMUSG00000052934.14, intron 1 of 4) protein_coding-intron (ENSMUSG00000052934.14, intron 1 of 8) 11872 ENSMUSG00000052934.14 ENSMUSG00000052934 ENSMUST00000181663 Fbxo31 protein_coding Interval_26682 chr11 59670979 59671549 + 0 NA intron (ENSMUSG00000005417.17, intron 1 of 23) protein_coding-intron (ENSMUSG00000005417.17, intron 1 of 22) 60679 ENSMUSG00000044061.7 ENSMUSG00000044061 ENSMUST00000055276 Olfr225 polymorphic_pseudogene Interval_149354 chr7 97654001 97654838 + 0 NA exon (ENSMUSG00000108547.1, exon 1 of 1) processed_pseudogene-exon (ENSMUSG00000108547.1, exon 1 of 1) 334 ENSMUSG00000108547.1 ENSMUSG00000108547 ENSMUST00000206874 Gm45186 processed_pseudogene Interval_29226 chr11 81718181 81718493 + 0 NA intron (ENSMUSG00000020704.13, intron 1 of 9) protein_coding-intron (ENSMUSG00000020704.13, intron 1 of 9) 130976 ENSMUSG00000087534.1 ENSMUSG00000087534 ENSMUST00000156193 Gm11418 antisense Interval_124805 chr5 54302928 54303801 + 0 NA Intergenic Intergenic -46627 ENSMUSG00000105912.1 ENSMUSG00000105912 ENSMUST00000197424 Gm10440 lincRNA Interval_12909 chr10 7939648 7939947 + 0 NA intron (ENSMUSG00000015755.16, intron 1 of 4) protein_coding-intron (ENSMUSG00000015755.16, intron 1 of 6) 16096 ENSMUSG00000015755.16 ENSMUSG00000015755 ENSMUST00000130322 Tab2 protein_coding Interval_120529 chr4 149163246 149163482 + 0 NA intron (ENSMUSG00000028961.15, intron 3 of 5) protein_coding-intron (ENSMUSG00000028961.15, intron 3 of 12) 3407 ENSMUSG00000028961.15 ENSMUSG00000028961 ENSMUST00000143944 Pgd protein_coding Interval_61487 chr15 81925599 81926727 + 0 NA promoter-TSS (ENSMUSG00000022476.8) protein_coding-promoter-TSS (ENSMUSG00000022476.8) -767 ENSMUSG00000022476.8 ENSMUSG00000022476 ENSMUST00000229402 Polr3h protein_coding Interval_148670 chr7 83989104 83989409 + 0 NA intron (ENSMUSG00000052353.13, intron 6 of 23) protein_coding-intron (ENSMUSG00000052353.13, intron 6 of 28) 94203 ENSMUSG00000038503.15 ENSMUSG00000038503 ENSMUST00000207373 Mesd protein_coding Interval_92385 chr2 59415918 59416748 + 0 NA Intergenic Intergenic -16552 ENSMUSG00000080982.1 ENSMUSG00000080982 ENSMUST00000118339 Gm13549 processed_pseudogene Interval_154051 chr8 12263791 12264047 + 0 NA Intergenic Intergenic -14900 ENSMUSG00000074473.1 ENSMUSG00000074473 ENSMUST00000098935 A230072I06Rik protein_coding Interval_6537 chr1 114961838 114962369 + 0 NA Intergenic Intergenic 257660 ENSMUSG00000101687.1 ENSMUSG00000101687 ENSMUST00000185902 Gm4854 processed_pseudogene Interval_126603 chr5 90672171 90672367 + 0 NA Intergenic Intergenic -62468 ENSMUSG00000029370.10 ENSMUSG00000029370 ENSMUST00000201436 Rassf6 protein_coding Interval_36558 chr12 49701705 49702444 + 0 NA Intergenic Intergenic 74701 ENSMUSG00000112605.1 ENSMUSG00000112605 ENSMUST00000220112 Gm7476 processed_pseudogene Interval_125022 chr5 63932451 63933397 + 0 NA intron (ENSMUSG00000047881.14, intron 3 of 6) protein_coding-intron (ENSMUSG00000047881.14, intron 4 of 7) -2010 ENSMUSG00000047881.14 ENSMUSG00000047881 ENSMUST00000127314 Rell1 protein_coding Interval_162051 chr8 124739121 124739744 + 0 NA TTS (ENSMUSG00000043068.6) protein_coding-TTS (ENSMUSG00000043068.6) 11029 ENSMUSG00000031982.5 ENSMUSG00000031982 ENSMUST00000212959 Arv1 protein_coding Interval_170592 chr9 109111485 109111695 + 0 NA intron (ENSMUSG00000053646.13, intron 24 of 37) protein_coding-intron (ENSMUSG00000053646.13, intron 24 of 37) 6089 ENSMUSG00000053646.13 ENSMUSG00000053646 ENSMUST00000194734 Plxnb1 protein_coding Interval_51860 chr14 33044407 33045120 + 0 NA intron (ENSMUSG00000051506.17, intron 40 of 61) protein_coding-intron (ENSMUSG00000051506.17, intron 37 of 58) 49498 ENSMUSG00000041673.12 ENSMUSG00000041673 ENSMUST00000123910 Lrrc18 protein_coding Interval_72557 chr17 30658119 30658773 + 0 NA exon (ENSMUSG00000033826.10, exon 11 of 11) protein_coding-exon (ENSMUSG00000033826.10, exon 11 of 11) -12194 ENSMUSG00000033826.10 ENSMUSG00000033826 ENSMUST00000235567 Dnah8 protein_coding Interval_90825 chr2 32846190 32847642 + 0 NA intron (ENSMUSG00000085397.1, intron 1 of 1) protein_coding-intron (ENSMUSG00000026797.16, intron 1 of 18) 290 ENSMUSG00000026797.16 ENSMUSG00000026797 ENSMUST00000208840 Stxbp1 protein_coding Interval_135360 chr6 38606567 38606765 + 0 NA TTS (ENSMUSG00000029823.16) protein_coding-TTS (ENSMUSG00000029823.16) 30567 ENSMUSG00000071537.6 ENSMUSG00000071537 ENSMUST00000201345 Klrg2 protein_coding Interval_152250 chr7 130935584 130938391 + 0 NA intron (ENSMUSG00000006205.13, intron 1 of 3) protein_coding-intron (ENSMUSG00000006205.13, intron 1 of 8) -6502 ENSMUSG00000006205.13 ENSMUSG00000006205 ENSMUST00000150905 Htra1 protein_coding Interval_152019 chr7 128304810 128305122 + 0 NA Intergenic Intergenic -6858 ENSMUSG00000030780.15 ENSMUSG00000030780 ENSMUST00000137677 BC017158 protein_coding Interval_35739 chr12 28773981 28774174 + 0 NA intron (ENSMUSG00000036613.8, intron 3 of 4) protein_coding-intron (ENSMUSG00000036613.8, intron 3 of 9) -15592 ENSMUSG00000114081.1 ENSMUSG00000114081 ENSMUST00000220880 Gm48904 TEC Interval_88238 chr19 60963918 60964618 + 0 NA intron (ENSMUSG00000003228.9, intron 1 of 4) protein_coding-intron (ENSMUSG00000003228.9, intron 1 of 15) 2984 ENSMUSG00000096578.2 ENSMUSG00000096578 ENSMUST00000177598 Gm9529 processed_pseudogene Interval_22618 chr11 12321034 12321298 + 0 NA exon (ENSMUSG00000086584.8, exon 4 of 5) antisense-exon (ENSMUSG00000086584.8, exon 4 of 5) -1109 ENSMUSG00000086584.8 ENSMUSG00000086584 ENSMUST00000174550 Gm12002 antisense Interval_110029 chr3 152640897 152641141 + 0 NA intron (ENSMUSG00000039058.11, intron 5 of 13) protein_coding-intron (ENSMUSG00000039058.11, intron 5 of 13) -25894 ENSMUSG00000097745.1 ENSMUSG00000097745 ENSMUST00000181093 AI115009 antisense Interval_129174 chr5 117989672 117989969 + 0 NA intron (ENSMUSG00000032898.9, intron 6 of 11) protein_coding-intron (ENSMUSG00000032898.9, intron 6 of 11) 13090 ENSMUSG00000032898.9 ENSMUSG00000032898 ENSMUST00000201889 Fbxo21 protein_coding Interval_90070 chr2 27708990 27709182 + 0 NA promoter-TSS (ENSMUSG00000015846.15) protein_coding-promoter-TSS (ENSMUSG00000015846.15) -16133 ENSMUSG00000015846.15 ENSMUSG00000015846 ENSMUST00000148756 Rxra protein_coding Interval_20565 chr10 119080341 119081315 + 0 NA Intergenic Intergenic -9514 ENSMUSG00000112683.1 ENSMUSG00000112683 ENSMUST00000218756 Gm18904 processed_pseudogene Interval_23330 chr11 21453481 21453954 + 0 NA Intergenic Intergenic -2363 ENSMUSG00000084412.1 ENSMUSG00000084412 ENSMUST00000120335 Gm12044 processed_pseudogene Interval_155106 chr8 26626338 26627953 + 0 NA intron (ENSMUSG00000110351.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000110351.1, intron 1 of 1) 335 ENSMUSG00000110351.1 ENSMUSG00000110351 ENSMUST00000209793 Gm32050 lincRNA Interval_93657 chr2 75643377 75644444 + 0 NA Intergenic Intergenic -10528 ENSMUSG00000082152.1 ENSMUSG00000082152 ENSMUST00000119695 Gm13655 processed_pseudogene Interval_88612 chr2 6728746 6728962 + 0 NA intron (ENSMUSG00000002107.18, intron 2 of 13) protein_coding-intron (ENSMUSG00000002107.18, intron 3 of 15) 143743 ENSMUSG00000002107.18 ENSMUSG00000002107 ENSMUST00000182037 Celf2 protein_coding Interval_158903 chr8 87833690 87834049 + 0 NA intron (ENSMUSG00000045333.15, intron 3 of 3) protein_coding-intron (ENSMUSG00000045333.15, intron 2 of 6) 119993 ENSMUSG00000045333.15 ENSMUSG00000045333 ENSMUST00000173092 Zfp423 protein_coding Interval_111847 chr4 31937211 31938968 + 0 NA Intergenic Intergenic -47578 ENSMUSG00000028284.13 ENSMUSG00000028284 ENSMUST00000131310 Map3k7 protein_coding Interval_102414 chr3 25033727 25034875 + 0 NA intron (ENSMUSG00000102758.3, intron 1 of 2) protein_coding-intron (ENSMUSG00000102758.3, intron 1 of 2) -26596 ENSMUSG00000105009.1 ENSMUSG00000105009 ENSMUST00000198854 Gm42774 processed_pseudogene Interval_171698 chr9 120215318 120216196 + 0 NA intron (ENSMUSG00000111360.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000111360.1, intron 1 of 2) -20884 ENSMUSG00000111360.1 ENSMUSG00000111360 ENSMUST00000216718 Gm38642 lincRNA Interval_3980 chr1 65352450 65352713 + 0 NA intron (ENSMUSG00000025946.13, intron 8 of 12) protein_coding-intron (ENSMUSG00000025946.13, intron 8 of 12) 68540 ENSMUSG00000100503.1 ENSMUSG00000100503 ENSMUST00000191528 Gm28927 unprocessed_pseudogene Interval_124880 chr5 58777143 58778167 + 0 NA Intergenic Intergenic 223338 ENSMUSG00000106509.1 ENSMUSG00000106509 ENSMUST00000198671 Gm43394 processed_pseudogene Interval_78141 chr18 9273818 9274404 + 0 NA Intergenic Intergenic 8698 ENSMUSG00000036855.3 ENSMUSG00000036855 ENSMUST00000041007 Gjd4 protein_coding Interval_66620 chr16 35695784 35696833 + 0 NA exon (ENSMUSG00000022848.8, exon 9 of 9) protein_coding-exon (ENSMUSG00000022848.8, exon 9 of 9) 25925 ENSMUSG00000087793.1 ENSMUSG00000087793 ENSMUST00000157168 Gm25967 snoRNA Interval_103770 chr3 52562687 52563014 + 0 NA Intergenic Intergenic 45886 ENSMUSG00000103965.1 ENSMUSG00000103965 ENSMUST00000195035 Gm30173 lincRNA Interval_58143 chr15 29002283 29002974 + 0 NA Intergenic Intergenic 147624 ENSMUSG00000115459.1 ENSMUSG00000115459 ENSMUST00000226719 Gm49280 TEC Interval_171669 chr9 120041472 120041726 + 0 NA intron (ENSMUSG00000052336.7, intron 2 of 2) protein_coding-intron (ENSMUSG00000052336.7, intron 2 of 2) -21784 ENSMUSG00000079243.4 ENSMUSG00000079243 ENSMUST00000238557 Xirp1 protein_coding Interval_4542 chr1 74891687 74893832 + 0 NA exon (ENSMUSG00000006546.3, exon 2 of 5) protein_coding-exon (ENSMUSG00000006546.3, exon 2 of 5) 133 ENSMUSG00000006546.3 ENSMUSG00000006546 ENSMUST00000133833 Cryba2 protein_coding Interval_5720 chr1 91217158 91217351 + 0 NA intron (ENSMUSG00000034353.14, intron 2 of 2) protein_coding-intron (ENSMUSG00000034353.14, intron 2 of 2) -33402 ENSMUSG00000034343.14 ENSMUSG00000034343 ENSMUST00000185697 Ube2f protein_coding Interval_47257 chr13 79829831 79830069 + 0 NA Intergenic Intergenic -8127 ENSMUSG00000114505.1 ENSMUSG00000114505 ENSMUST00000223593 Gm48471 processed_pseudogene Interval_1190 chr1 16790746 16791139 + 0 NA Intergenic Intergenic -20804 ENSMUSG00000091020.3 ENSMUSG00000091020 ENSMUST00000071842 Gm5828 processed_pseudogene Interval_69599 chr16 94542628 94543567 + 0 NA Intergenic Intergenic -27810 ENSMUSG00000022897.15 ENSMUSG00000022897 ENSMUST00000134383 Dyrk1a protein_coding Interval_7067 chr1 125286315 125286789 + 0 NA Intergenic Intergenic -89097 ENSMUSG00000099574.1 ENSMUSG00000099574 ENSMUST00000187796 1700121L03Rik lincRNA Interval_44870 chr13 49234533 49235553 + 0 NA intron (ENSMUSG00000021384.14, intron 3 of 3) protein_coding-intron (ENSMUSG00000021384.14, intron 4 of 4) 5575 ENSMUSG00000021384.14 ENSMUSG00000021384 ENSMUST00000131880 Susd3 protein_coding Interval_45776 chr13 58007086 58008090 + 0 NA intron (ENSMUSG00000014164.15, intron 14 of 14) protein_coding-intron (ENSMUSG00000014164.15, intron 16 of 16) 15612 ENSMUSG00000077962.1 ENSMUSG00000077962 ENSMUST00000104769 Mir874 miRNA Interval_118413 chr4 131266875 131267446 + 0 NA Intergenic Intergenic 27883 ENSMUSG00000088041.1 ENSMUSG00000088041 ENSMUST00000157416 Gm25261 snoRNA Interval_91924 chr2 51532971 51533163 + 0 NA Intergenic Intergenic -11908 ENSMUSG00000084334.1 ENSMUSG00000084334 ENSMUST00000120828 Gm13494 processed_pseudogene Interval_77425 chr17 88613104 88613778 + 0 NA intron (ENSMUSG00000033855.15, intron 1 of 2) protein_coding-intron (ENSMUSG00000033855.15, intron 1 of 1) -4897 ENSMUSG00000117398.1 ENSMUSG00000117398 ENSMUST00000234525 Gm9406 processed_pseudogene Interval_64356 chr16 10767112 10767657 + 0 NA Intergenic Intergenic 18152 ENSMUSG00000038037.5 ENSMUSG00000038037 ENSMUST00000038099 Socs1 protein_coding Interval_21863 chr11 4821348 4823119 + 0 NA intron (ENSMUSG00000009073.16, intron 1 of 8) protein_coding-intron (ENSMUSG00000009073.16, intron 1 of 16) 26892 ENSMUSG00000009073.16 ENSMUSG00000009073 ENSMUST00000172305 Nf2 protein_coding Interval_89186 chr2 17932447 17933751 + 0 NA Intergenic Intergenic 63859 ENSMUSG00000062651.4 ENSMUSG00000062651 ENSMUST00000105001 H2al2a protein_coding Interval_28602 chr11 77077462 77079050 + 0 NA promoter-TSS (ENSMUSG00000065518.2) miRNA-promoter-TSS (ENSMUSG00000065518.2) -84 ENSMUSG00000065518.2 ENSMUSG00000065518 ENSMUST00000083584 Mir423 miRNA Interval_153123 chr7 141480867 141482839 + 0 NA promoter-TSS (ENSMUSG00000025511.15) protein_coding-promoter-TSS (ENSMUSG00000025511.15) -211 ENSMUSG00000025511.15 ENSMUSG00000025511 ENSMUST00000130402 Tspan4 protein_coding Interval_164776 chr9 41612172 41613141 + 0 NA TTS (ENSMUSG00000074415.14) processed_transcript-TTS (ENSMUSG00000074415.14) -6336 ENSMUSG00000111107.1 ENSMUSG00000111107 ENSMUST00000216975 Gm48737 TEC Interval_31223 chr11 98990201 98990721 + 0 NA Intergenic Intergenic 5263 ENSMUSG00000020914.17 ENSMUSG00000020914 ENSMUST00000129777 Top2a protein_coding Interval_148024 chr7 78397664 78399078 + 0 NA intron (ENSMUSG00000059146.12, intron 3 of 3) protein_coding-intron (ENSMUSG00000059146.12, intron 11 of 16) 144075 ENSMUSG00000108788.1 ENSMUSG00000108788 ENSMUST00000206993 4921513I08Rik antisense Interval_115900 chr4 106063703 106064035 + 0 NA Intergenic Intergenic -35055 ENSMUSG00000082768.1 ENSMUSG00000082768 ENSMUST00000119885 Gm12727 processed_pseudogene Interval_42356 chr13 12314542 12315661 + 0 NA intron (ENSMUSG00000052374.16, intron 2 of 21) protein_coding-intron (ENSMUSG00000052374.16, intron 1 of 20) -41005 ENSMUSG00000052374.16 ENSMUSG00000052374 ENSMUST00000110616 Actn2 protein_coding Interval_144697 chr7 27586570 27587335 + 0 NA Intergenic Intergenic -4794 ENSMUSG00000004056.15 ENSMUSG00000004056 ENSMUST00000136981 Akt2 protein_coding Interval_12288 chr1 191406824 191407957 + 0 NA promoter-TSS (ENSMUSG00000103433.1) processed_pseudogene-promoter-TSS (ENSMUSG00000103433.1) -276 ENSMUSG00000103433.1 ENSMUSG00000103433 ENSMUST00000194903 Gm2272 processed_pseudogene Interval_12908 chr10 7925345 7925957 + 0 NA intron (ENSMUSG00000015755.16, intron 1 of 6) protein_coding-intron (ENSMUSG00000015755.16, intron 1 of 6) 30242 ENSMUSG00000015755.16 ENSMUSG00000015755 ENSMUST00000130322 Tab2 protein_coding Interval_171233 chr9 115450823 115451215 + 0 NA Intergenic Intergenic -12438 ENSMUSG00000074034.1 ENSMUSG00000074034 ENSMUST00000075898 Gm5921 processed_pseudogene Interval_138724 chr6 91453083 91453452 + 0 NA Intergenic Intergenic -6401 ENSMUSG00000108810.1 ENSMUSG00000108810 ENSMUST00000206951 Gm44629 processed_pseudogene Interval_42148 chr13 9181800 9182299 + 0 NA Intergenic Intergenic -41168 ENSMUSG00000099428.1 ENSMUSG00000099428 ENSMUST00000191066 Gm28155 processed_pseudogene Interval_8870 chr1 151680254 151680595 + 0 NA intron (ENSMUSG00000026483.13, intron 1 of 9) protein_coding-intron (ENSMUSG00000026483.13, intron 1 of 9) 74594 ENSMUSG00000100594.1 ENSMUSG00000100594 ENSMUST00000186444 2810414N06Rik lincRNA Interval_48548 chr13 100035047 100035336 + 0 NA exon (ENSMUSG00000049658.13, exon 34 of 39) protein_coding-exon (ENSMUSG00000049658.13, exon 34 of 39) 31260 ENSMUSG00000049658.13 ENSMUSG00000049658 ENSMUST00000163097 Bdp1 protein_coding Interval_8874 chr1 151705787 151706751 + 0 NA intron (ENSMUSG00000026483.13, intron 11 of 13) protein_coding-intron (ENSMUSG00000026483.13, intron 7 of 9) 48749 ENSMUSG00000100594.1 ENSMUSG00000100594 ENSMUST00000186444 2810414N06Rik lincRNA Interval_45622 chr13 56309323 56309774 + 0 NA Intergenic Intergenic 10786 ENSMUSG00000114911.1 ENSMUSG00000114911 ENSMUST00000224089 Gm17878 processed_pseudogene Interval_71168 chr17 20718625 20719696 + 0 NA Intergenic Intergenic -10683 ENSMUSG00000067951.5 ENSMUSG00000067951 ENSMUST00000088829 Vmn1r227 protein_coding Interval_32847 chr11 111894038 111894267 + 0 NA Intergenic Intergenic -93276 ENSMUSG00000086752.1 ENSMUSG00000086752 ENSMUST00000124855 Gm11674 lincRNA Interval_68251 chr16 71153744 71154156 + 0 NA Intergenic Intergenic 20978 ENSMUSG00000096043.1 ENSMUSG00000096043 ENSMUST00000179817 Gm24968 snRNA Interval_47276 chr13 80488075 80488701 + 0 NA Intergenic Intergenic -4621 ENSMUSG00000114528.1 ENSMUSG00000114528 ENSMUST00000223876 Gm46388 processed_pseudogene Interval_19120 chr10 94807277 94807594 + 0 NA intron (ENSMUSG00000074785.5, intron 23 of 30) protein_coding-intron (ENSMUSG00000074785.5, intron 23 of 30) 14220 ENSMUSG00000088608.1 ENSMUSG00000088608 ENSMUST00000157983 Gm24186 rRNA Interval_1739 chr1 33291494 33291823 + 0 NA Intergenic Intergenic -2018 ENSMUSG00000065223.1 ENSMUSG00000065223 ENSMUST00000083289 Gm25792 snRNA Interval_47796 chr13 92992692 92993193 + 0 NA Intergenic Intergenic -80437 ENSMUSG00000114382.1 ENSMUSG00000114382 ENSMUST00000225665 Gm4814 antisense Interval_70806 chr17 14885910 14886142 + 0 NA intron (ENSMUSG00000046991.12, intron 21 of 24) protein_coding-intron (ENSMUSG00000046991.12, intron 20 of 22) -55939 ENSMUSG00000092577.1 ENSMUSG00000092577 ENSMUST00000172650 Gm7393 processed_pseudogene Interval_142258 chr6 140132407 140132712 + 0 NA TTS (ENSMUSG00000107407.1) processed_pseudogene-TTS (ENSMUSG00000107407.1) 492 ENSMUSG00000107407.1 ENSMUSG00000107407 ENSMUST00000204065 Gm44159 processed_pseudogene Interval_78322 chr18 11966547 11967489 + 0 NA intron (ENSMUSG00000049411.15, intron 9 of 9) protein_coding-intron (ENSMUSG00000049411.15, intron 9 of 9) 53887 ENSMUSG00000117430.1 ENSMUSG00000117430 ENSMUST00000234828 Gm49968 TEC Interval_130020 chr5 123727933 123728180 + 0 NA TTS (ENSMUSG00000029422.15) protein_coding-TTS (ENSMUSG00000029422.15) -7282 ENSMUSG00000029427.11 ENSMUSG00000029427 ENSMUST00000200503 Zcchc8 protein_coding Interval_115062 chr4 89143738 89144078 + 0 NA intron (ENSMUSG00000062937.7, intron 1 of 7) protein_coding-intron (ENSMUSG00000062937.7, intron 1 of 7) -15682 ENSMUSG00000085569.1 ENSMUSG00000085569 ENSMUST00000138655 Gm12602 processed_transcript Interval_69554 chr16 94193348 94193554 + 0 NA intron (ENSMUSG00000040820.16, intron 2 of 6) protein_coding-intron (ENSMUSG00000040820.16, intron 5 of 9) 18910 ENSMUSG00000115246.1 ENSMUSG00000115246 ENSMUST00000228762 Gm48984 antisense Interval_145183 chr7 30501913 30502164 + 0 NA intron (ENSMUSG00000036892.12, intron 3 of 5) protein_coding-intron (ENSMUSG00000036892.12, intron 4 of 9) 8379 ENSMUSG00000036892.12 ENSMUSG00000036892 ENSMUST00000122876 Prodh2 protein_coding Interval_61930 chr15 85319551 85320358 + 0 NA Intergenic Intergenic -16291 ENSMUSG00000016541.10 ENSMUSG00000016541 ENSMUST00000163242 Atxn10 protein_coding Interval_7604 chr1 132476744 132478152 + 0 NA promoter-TSS (ENSMUSG00000026439.14) protein_coding-promoter-TSS (ENSMUSG00000026439.14) 81 ENSMUSG00000026439.14 ENSMUSG00000026439 ENSMUST00000187834 Rbbp5 protein_coding Interval_36357 chr12 41904741 41904949 + 0 NA intron (ENSMUSG00000056899.10, intron 5 of 5) protein_coding-intron (ENSMUSG00000056899.10, intron 6 of 6) -76322 ENSMUSG00000113105.1 ENSMUSG00000113105 ENSMUST00000221020 Gm47371 antisense Interval_14804 chr10 40042261 40043108 + 0 NA intron (ENSMUSG00000019838.11, intron 3 of 4) protein_coding-intron (ENSMUSG00000019838.11, intron 4 of 5) -17489 ENSMUSG00000038522.7 ENSMUSG00000038522 ENSMUST00000239109 Mfsd4b1 protein_coding Interval_151452 chr7 122621966 122622971 + 0 NA intron (ENSMUSG00000052889.11, intron 16 of 16) protein_coding-intron (ENSMUSG00000052889.11, intron 16 of 16) -10980 ENSMUSG00000052889.11 ENSMUSG00000052889 ENSMUST00000206495 Prkcb protein_coding Interval_53914 chr14 63368062 63368344 + 0 NA Intergenic Intergenic 8215 ENSMUSG00000014453.4 ENSMUSG00000014453 ENSMUST00000224965 Blk protein_coding Interval_82086 chr18 67656730 67657506 + 0 NA Intergenic Intergenic 15510 ENSMUSG00000024537.5 ENSMUSG00000024537 ENSMUST00000236522 Psmg2 protein_coding Interval_120251 chr4 144916422 144917906 + 0 NA intron (ENSMUSG00000066026.14, intron 2 of 6) protein_coding-intron (ENSMUSG00000066026.14, intron 1 of 5) 24337 ENSMUSG00000066026.14 ENSMUSG00000066026 ENSMUST00000133265 Dhrs3 protein_coding Interval_76021 chr17 74424517 74425837 + 0 NA TTS (ENSMUSG00000024069.14) protein_coding-TTS (ENSMUSG00000024069.14) 13462 ENSMUSG00000117187.1 ENSMUSG00000117187 ENSMUST00000233026 Gm4708 processed_pseudogene Interval_34462 chr12 4390645 4393050 + 0 NA intron (ENSMUSG00000020647.10, intron 1 of 22) protein_coding-intron (ENSMUSG00000020647.10, intron 2 of 22) -2635 ENSMUSG00000084597.1 ENSMUSG00000084597 ENSMUST00000122648 Gm22343 misc_RNA Interval_26994 chr11 62269092 62269494 + 0 NA intron (ENSMUSG00000014243.5, intron 3 of 4) protein_coding-intron (ENSMUSG00000014243.5, intron 3 of 4) 12082 ENSMUSG00000014243.5 ENSMUSG00000014243 ENSMUST00000072916 Zswim7 protein_coding Interval_103598 chr3 51070523 51071430 + 0 NA intron (ENSMUSG00000102067.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000102067.1, intron 1 of 2) 3880 ENSMUSG00000102067.1 ENSMUSG00000102067 ENSMUST00000189687 Gm29230 lincRNA Interval_64362 chr16 10834949 10835742 + 0 NA exon (ENSMUSG00000037991.9, exon 1 of 2) protein_coding-exon (ENSMUSG00000037991.9, exon 1 of 2) 277 ENSMUSG00000037991.9 ENSMUSG00000037991 ENSMUST00000181721 Rmi2 protein_coding Interval_22056 chr11 6038029 6039644 + 0 NA intron (ENSMUSG00000057897.14, intron 1 of 5) protein_coding-intron (ENSMUSG00000057897.14, intron 1 of 18) -54698 ENSMUSG00000057897.14 ENSMUSG00000057897 ENSMUST00000129098 Camk2b protein_coding Interval_155422 chr8 33475519 33476153 + 0 NA Intergenic Intergenic -8360 ENSMUSG00000109750.1 ENSMUSG00000109750 ENSMUST00000210634 Hmgb1-rs17 unprocessed_pseudogene Interval_160583 chr8 110845871 110847466 + 0 NA promoter-TSS (ENSMUSG00000031753.16) protein_coding-promoter-TSS (ENSMUSG00000031753.16) 59 ENSMUSG00000033732.10 ENSMUSG00000033732 ENSMUST00000212843 Sf3b3 protein_coding Interval_20066 chr10 113027520 113027762 + 0 NA exon (ENSMUSG00000111979.1, exon 1 of 1) TEC-exon (ENSMUSG00000111979.1, exon 1 of 1) 2140 ENSMUSG00000111979.1 ENSMUSG00000111979 ENSMUST00000219265 Gm47522 TEC Interval_67414 chr16 48435137 48435998 + 0 NA intron (ENSMUSG00000022652.7, intron 1 of 26) protein_coding-intron (ENSMUSG00000022652.7, intron 1 of 26) -23151 ENSMUSG00000110573.1 ENSMUSG00000110573 ENSMUST00000212197 Gm5485 protein_coding Interval_21181 chr10 127085021 127085663 + 0 NA intron (ENSMUSG00000025422.10, intron 6 of 18) protein_coding-intron (ENSMUSG00000025422.10, intron 6 of 18) 10058 ENSMUSG00000025422.10 ENSMUSG00000025422 ENSMUST00000217941 Agap2 protein_coding Interval_134126 chr6 21026521 21027705 + 0 NA Intergenic Intergenic -13871 ENSMUSG00000087831.1 ENSMUSG00000087831 ENSMUST00000157206 Gm23960 snoRNA Interval_173114 chrX 72240264 72241204 + 0 NA Intergenic Intergenic 10744 ENSMUSG00000114356.1 ENSMUSG00000114356 ENSMUST00000223746 Gm47265 unprocessed_pseudogene Interval_15175 chr10 43100753 43100957 + 0 NA intron (ENSMUSG00000038248.8, intron 4 of 6) protein_coding-intron (ENSMUSG00000038248.8, intron 4 of 6) -53361 ENSMUSG00000099893.1 ENSMUSG00000099893 ENSMUST00000187332 Gm29245 TEC Interval_70725 chr17 13893266 13893817 + 0 NA intron (ENSMUSG00000068036.16, intron 30 of 30) protein_coding-intron (ENSMUSG00000068036.16, intron 1 of 2) -17707 ENSMUSG00000115221.1 ENSMUSG00000115221 ENSMUST00000227377 Gm49121 unitary_pseudogene Interval_24767 chr11 37046854 37047454 + 0 NA intron (ENSMUSG00000049336.16, intron 2 of 3) protein_coding-intron (ENSMUSG00000049336.16, intron 2 of 30) -102988 ENSMUSG00000049336.16 ENSMUSG00000049336 ENSMUST00000157030 Tenm2 protein_coding Interval_11247 chr1 180454950 180455170 + 0 NA intron (ENSMUSG00000053963.7, intron 1 of 2) protein_coding-intron (ENSMUSG00000053963.7, intron 1 of 3) 10821 ENSMUSG00000053963.7 ENSMUSG00000053963 ENSMUST00000211782 Stum protein_coding Interval_16682 chr10 67010092 67011391 + 0 NA TTS (ENSMUSG00000019873.8) protein_coding-TTS (ENSMUSG00000019873.8) 5666 ENSMUSG00000112925.1 ENSMUSG00000112925 ENSMUST00000218205 Gm31763 antisense Interval_163161 chr9 16159337 16159778 + 0 NA intron (ENSMUSG00000074505.6, intron 3 of 25) protein_coding-intron (ENSMUSG00000074505.6, intron 2 of 24) 275838 ENSMUSG00000111652.1 ENSMUSG00000111652 ENSMUST00000215220 Gm48726 TEC Interval_5952 chr1 93463038 93463337 + 0 NA intron (ENSMUSG00000034088.15, intron 1 of 5) protein_coding-intron (ENSMUSG00000034088.15, intron 1 of 27) -15806 ENSMUSG00000116048.1 ENSMUSG00000116048 ENSMUST00000168776 Septin2 protein_coding Interval_100111 chr2 167128549 167130883 + 0 NA intron (ENSMUSG00000050556.9, intron 1 of 1) protein_coding-intron (ENSMUSG00000050556.9, intron 2 of 2) 36157 ENSMUSG00000083436.1 ENSMUSG00000083436 ENSMUST00000121824 Gm11471 processed_pseudogene Interval_104012 chr3 57277434 57278021 + 0 NA Intergenic Intergenic -5358 ENSMUSG00000104534.1 ENSMUSG00000104534 ENSMUST00000199542 Gm18660 processed_pseudogene Interval_142464 chr6 142544515 142545214 + 0 NA Intergenic Intergenic 26750 ENSMUSG00000030247.9 ENSMUSG00000030247 ENSMUST00000032374 Kcnj8 protein_coding Interval_103214 chr3 36883577 36883871 + 0 NA intron (ENSMUSG00000037270.18, intron 4 of 47) protein_coding-intron (ENSMUSG00000037270.18, intron 6 of 85) 13696 ENSMUSG00000037270.18 ENSMUSG00000037270 ENSMUST00000196036 4932438A13Rik protein_coding Interval_30822 chr11 96705585 96706458 + 0 NA intron (ENSMUSG00000057058.16, intron 6 of 12) protein_coding-intron (ENSMUSG00000057058.16, intron 6 of 11) -60781 ENSMUSG00000085242.1 ENSMUSG00000085242 ENSMUST00000124865 Gm11537 antisense Interval_142172 chr6 137786610 137787705 + 0 NA intron (ENSMUSG00000030225.11, intron 2 of 4) protein_coding-intron (ENSMUSG00000030225.11, intron 2 of 4) 42117 ENSMUSG00000030224.10 ENSMUSG00000030224 ENSMUST00000137235 Strap protein_coding Interval_138223 chr6 86427923 86428134 + 0 NA TTS (ENSMUSG00000071337.11) protein_coding-TTS (ENSMUSG00000071337.11) 1370 ENSMUSG00000107539.1 ENSMUSG00000107539 ENSMUST00000204137 Gm44790 protein_coding Interval_70096 chr17 5287242 5287449 + 0 NA intron (ENSMUSG00000069729.14, intron 7 of 19) protein_coding-intron (ENSMUSG00000069729.14, intron 7 of 18) -101418 ENSMUSG00000101133.1 ENSMUSG00000101133 ENSMUST00000190732 Gm29050 antisense Interval_153961 chr8 11511852 11513048 + 0 NA promoter-TSS (ENSMUSG00000031505.11) protein_coding-promoter-TSS (ENSMUSG00000031505.11) 64 ENSMUSG00000031505.11 ENSMUSG00000031505 ENSMUST00000210316 Naxd protein_coding Interval_76987 chr17 85400952 85401274 + 0 NA intron (ENSMUSG00000071037.6, intron 6 of 10) protein_coding-intron (ENSMUSG00000071037.6, intron 6 of 10) -97520 ENSMUSG00000097803.1 ENSMUSG00000097803 ENSMUST00000181130 Rpl31-ps16 processed_pseudogene Interval_74512 chr17 52611144 52612039 + 0 NA intron (ENSMUSG00000035580.10, intron 1 of 15) protein_coding-intron (ENSMUSG00000035580.10, intron 1 of 15) -8931 ENSMUSG00000098552.1 ENSMUSG00000098552 ENSMUST00000183438 Gm27217 antisense Interval_159896 chr8 104824996 104825582 + 0 NA Intergenic Intergenic -6312 ENSMUSG00000050097.6 ENSMUSG00000050097 ENSMUST00000163042 Ces2b protein_coding Interval_92403 chr2 59562852 59563045 + 0 NA Intergenic Intergenic 1736 ENSMUSG00000081157.1 ENSMUSG00000081157 ENSMUST00000118837 Gm13552 processed_pseudogene Interval_126285 chr5 86074205 86074419 + 0 NA intron (ENSMUSG00000029254.16, intron 1 of 8) protein_coding-intron (ENSMUSG00000029254.16, intron 1 of 7) 2566 ENSMUSG00000029254.16 ENSMUSG00000029254 ENSMUST00000138076 Stap1 protein_coding Interval_10835 chr1 175875586 175875813 + 0 NA Intergenic Intergenic -5095 ENSMUSG00000039748.11 ENSMUSG00000039748 ENSMUST00000192378 Exo1 protein_coding Interval_17286 chr10 75585869 75587064 + 0 NA TTS (ENSMUSG00000006345.10) protein_coding-TTS (ENSMUSG00000006345.10) 1361 ENSMUSG00000006345.10 ENSMUSG00000006345 ENSMUST00000156487 Ggt1 protein_coding Interval_125962 chr5 76235973 76236198 + 0 NA intron (ENSMUSG00000029238.11, intron 17 of 17) protein_coding-intron (ENSMUSG00000029238.11, intron 17 of 22) -3015 ENSMUSG00000106831.1 ENSMUSG00000106831 ENSMUST00000201768 Ube2n-ps1 processed_pseudogene Interval_16415 chr10 62800718 62800930 + 0 NA Intergenic Intergenic -17637 ENSMUSG00000112806.1 ENSMUSG00000112806 ENSMUST00000218355 Gm48146 TEC Interval_107556 chr3 108481775 108482162 + 0 NA intron (ENSMUSG00000040412.17, intron 3 of 20) protein_coding-intron (ENSMUSG00000040412.17, intron 3 of 20) -16150 ENSMUSG00000080673.1 ENSMUSG00000080673 ENSMUST00000117023 Gm23336 snRNA Interval_55272 chr14 79890302 79891096 + 0 NA promoter-TSS (ENSMUSG00000097927.2) lincRNA-promoter-TSS (ENSMUSG00000097927.2) -372 ENSMUSG00000097927.2 ENSMUSG00000097927 ENSMUST00000232826 Gm6999 lincRNA Interval_3847 chr1 63609268 63609998 + 0 NA Intergenic Intergenic -6335 ENSMUSG00000115378.1 ENSMUSG00000115378 ENSMUST00000226288 Gm39653 protein_coding Interval_131465 chr5 137397040 137397282 + 0 NA intron (ENSMUSG00000079173.11, intron 67 of 86) protein_coding-intron (ENSMUSG00000079173.11, intron 68 of 87) 4577 ENSMUSG00000079173.11 ENSMUSG00000079173 ENSMUST00000130056 Zan protein_coding Interval_112064 chr4 33908386 33909395 + 0 NA Intergenic Intergenic -15703 ENSMUSG00000044288.6 ENSMUSG00000044288 ENSMUST00000084736 Cnr1 protein_coding Interval_63863 chr16 4059068 4059853 + 0 NA intron (ENSMUSG00000005981.11, intron 4 of 4) protein_coding-intron (ENSMUSG00000005981.11, intron 6 of 17) -1963 ENSMUSG00000093262.1 ENSMUSG00000093262 ENSMUST00000175521 Gm23413 miRNA Interval_132930 chr5 148794339 148794934 + 0 NA Intergenic Intergenic 16673 ENSMUSG00000085740.1 ENSMUSG00000085740 ENSMUST00000155504 4930505K14Rik lincRNA Interval_47680 chr13 91175175 91175597 + 0 NA intron (ENSMUSG00000021619.6, intron 2 of 6) protein_coding-intron (ENSMUSG00000021619.6, intron 2 of 7) -45066 ENSMUSG00000091419.2 ENSMUSG00000091419 ENSMUST00000164671 Gm17450 pseudogene Interval_152739 chr7 137065630 137066986 + 0 NA intron (ENSMUSG00000054612.4, intron 2 of 4) protein_coding-intron (ENSMUSG00000054612.4, intron 2 of 4) -101512 ENSMUSG00000110174.1 ENSMUSG00000110174 ENSMUST00000211656 Gm45499 processed_pseudogene Interval_98803 chr2 155100404 155101132 + 0 NA promoter-TSS (ENSMUSG00000087254.1) lincRNA-promoter-TSS (ENSMUSG00000087254.1) -687 ENSMUSG00000087254.1 ENSMUSG00000087254 ENSMUST00000142569 2310005A03Rik lincRNA Interval_75563 chr17 68082680 68083511 + 0 NA intron (ENSMUSG00000117243.1, intron 1 of 3) lincRNA-intron (ENSMUSG00000117243.1, intron 1 of 3) 31291 ENSMUSG00000117208.1 ENSMUSG00000117208 ENSMUST00000233735 Gm49945 lincRNA Interval_121475 chr4 156033674 156035415 + 0 NA TTS (ENSMUSG00000029074.14) protein_coding-TTS (ENSMUSG00000029074.14) 8212 ENSMUSG00000041954.18 ENSMUSG00000041954 ENSMUST00000125100 Tnfrsf18 protein_coding Interval_172617 chrX 38451576 38452318 + 0 NA TTS (ENSMUSG00000016534.15) protein_coding-TTS (ENSMUSG00000016534.15) 4467 ENSMUSG00000016534.15 ENSMUSG00000016534 ENSMUST00000144663 Lamp2 protein_coding Interval_119325 chr4 136877008 136877255 + 0 NA Intergenic Intergenic 9056 ENSMUSG00000036905.8 ENSMUSG00000036905 ENSMUST00000046384 C1qb protein_coding Interval_74511 chr17 52600747 52602750 + 0 NA promoter-TSS (ENSMUSG00000035580.10) protein_coding-promoter-TSS (ENSMUSG00000035580.10) 912 ENSMUSG00000098552.1 ENSMUSG00000098552 ENSMUST00000183438 Gm27217 antisense Interval_72840 chr17 32496026 32496533 + 0 NA Intergenic Intergenic -9771 ENSMUSG00000091586.2 ENSMUSG00000091586 ENSMUST00000236129 Cyp4f17 protein_coding Interval_159985 chr8 105596225 105597275 + 0 NA intron (ENSMUSG00000005705.10, intron 1 of 5) protein_coding-intron (ENSMUSG00000005705.10, intron 1 of 5) -8505 ENSMUSG00000038604.9 ENSMUSG00000038604 ENSMUST00000043531 Ripor1 protein_coding Interval_29428 chr11 83941751 83942726 + 0 NA exon (ENSMUSG00000020677.7, exon 1 of 15) protein_coding-exon (ENSMUSG00000020677.7, exon 1 of 15) -4017 ENSMUSG00000020677.7 ENSMUSG00000020677 ENSMUST00000130982 Ddx52 protein_coding Interval_73329 chr17 36237183 36238000 + 0 NA promoter-TSS (ENSMUSG00000092363.1) unprocessed_pseudogene-promoter-TSS (ENSMUSG00000092363.1) -232 ENSMUSG00000092363.1 ENSMUSG00000092363 ENSMUST00000174722 Gm20391 unprocessed_pseudogene Interval_86876 chr19 44562483 44563299 + 0 NA promoter-TSS (ENSMUSG00000036450.4) protein_coding-promoter-TSS (ENSMUSG00000036450.4) 41 ENSMUSG00000036450.4 ENSMUSG00000036450 ENSMUST00000040455 Hif1an protein_coding Interval_12796 chr10 5514381 5514699 + 0 NA intron (ENSMUSG00000096054.3, intron 2 of 145) protein_coding-intron (ENSMUSG00000096054.3, intron 2 of 31) -79235 ENSMUSG00000046916.9 ENSMUSG00000046916 ENSMUST00000051809 Myct1 protein_coding Interval_114104 chr4 63461095 63461703 + 0 NA promoter-TSS (ENSMUSG00000039137.18) protein_coding-promoter-TSS (ENSMUSG00000039137.18) -28077 ENSMUSG00000039137.18 ENSMUSG00000039137 ENSMUST00000140720 Whrn protein_coding Interval_86672 chr19 42455386 42456386 + 0 NA Intergenic Intergenic -24101 ENSMUSG00000042401.8 ENSMUSG00000042401 ENSMUST00000238182 Crtac1 protein_coding Interval_74360 chr17 49439847 49440624 + 0 NA intron (ENSMUSG00000064120.14, intron 4 of 10) protein_coding-intron (ENSMUSG00000064120.14, intron 4 of 10) -10995 ENSMUSG00000092268.1 ENSMUSG00000092268 ENSMUST00000172972 Gm20540 processed_transcript Interval_82273 chr18 69848373 69848571 + 0 NA Intergenic Intergenic 62252 ENSMUSG00000118028.1 ENSMUSG00000118028 ENSMUST00000235804 Gm50215 lincRNA Interval_27479 chr11 68127761 68128066 + 0 NA intron (ENSMUSG00000020903.13, intron 6 of 6) protein_coding-intron (ENSMUSG00000020903.13, intron 7 of 7) -31949 ENSMUSG00000083924.1 ENSMUSG00000083924 ENSMUST00000120312 Gm12304 processed_pseudogene Interval_11255 chr1 180499524 180500326 + 0 NA Intergenic Intergenic 19802 ENSMUSG00000102608.1 ENSMUSG00000102608 ENSMUST00000194222 Gm37267 lincRNA Interval_84920 chr19 18758014 18759332 + 0 NA promoter-TSS (ENSMUSG00000024727.9) protein_coding-promoter-TSS (ENSMUSG00000024727.9) 48 ENSMUSG00000024727.9 ENSMUSG00000024727 ENSMUST00000237020 Trpm6 protein_coding Interval_47211 chr13 78138848 78140276 + 0 NA intron (ENSMUSG00000114401.1, intron 1 of 1) protein_coding-intron (ENSMUSG00000064138.14, intron 9 of 9) 18492 ENSMUSG00000114622.1 ENSMUSG00000114622 ENSMUST00000225009 Gm18990 processed_pseudogene Interval_29788 chr11 86812830 86813227 + 0 NA Intergenic Intergenic -11940 ENSMUSG00000018425.18 ENSMUSG00000018425 ENSMUST00000131798 Dhx40 protein_coding Interval_1065 chr1 14739768 14740367 + 0 NA Intergenic Intergenic -12870 ENSMUSG00000054493.2 ENSMUSG00000054493 ENSMUST00000067599 Gm9947 antisense Interval_41244 chr12 112100876 112101241 + 0 NA Intergenic Intergenic -5621 ENSMUSG00000037686.6 ENSMUSG00000037686 ENSMUST00000222970 Aspg protein_coding Interval_155072 chr8 26145164 26145786 + 0 NA intron (ENSMUSG00000109850.1, intron 5 of 5) protein_coding-intron (ENSMUSG00000109850.1, intron 5 of 5) 10004 ENSMUSG00000110317.1 ENSMUSG00000110317 ENSMUST00000209414 Gm45250 lincRNA Interval_19702 chr10 108194749 108195611 + 0 NA intron (ENSMUSG00000019907.10, intron 1 of 24) protein_coding-intron (ENSMUSG00000019907.10, intron 1 of 25) -52748 ENSMUSG00000112401.1 ENSMUSG00000112401 ENSMUST00000219675 Gm47999 processed_pseudogene Interval_15138 chr10 42841298 42842743 + 0 NA Intergenic Intergenic -18523 ENSMUSG00000044770.14 ENSMUSG00000044770 ENSMUST00000127675 Scml4 protein_coding Interval_2603 chr1 41810449 41810940 + 0 NA intron (ENSMUSG00000100832.1, intron 1 of 5) lincRNA-intron (ENSMUSG00000100832.1, intron 1 of 5) -107658 ENSMUSG00000100832.1 ENSMUSG00000100832 ENSMUST00000187227 Gm29260 lincRNA Interval_72273 chr17 28909163 28910689 + 0 NA intron (ENSMUSG00000048905.5, intron 1 of 11) protein_coding-intron (ENSMUSG00000048905.5, intron 1 of 11) -4226 ENSMUSG00000048905.5 ENSMUSG00000048905 ENSMUST00000228025 Bnip5 protein_coding Interval_68129 chr16 65526355 65526885 + 0 NA promoter-TSS (ENSMUSG00000116699.1) lincRNA-promoter-TSS (ENSMUSG00000116699.1) -449 ENSMUSG00000116699.1 ENSMUSG00000116699 ENSMUST00000232553 Gm49631 lincRNA Interval_119229 chr4 136333279 136333659 + 0 NA intron (ENSMUSG00000066037.14, intron 8 of 10) protein_coding-intron (ENSMUSG00000066037.14, intron 7 of 9) -5550 ENSMUSG00000066037.14 ENSMUSG00000066037 ENSMUST00000180855 Hnrnpr protein_coding Interval_56961 chr14 124148229 124148456 + 0 NA intron (ENSMUSG00000025551.13, intron 1 of 4) protein_coding-intron (ENSMUSG00000025551.13, intron 1 of 4) 160707 ENSMUSG00000099994.1 ENSMUSG00000099994 ENSMUST00000190088 1700024B18Rik antisense Interval_102877 chr3 32490193 32490520 + 0 NA intron (ENSMUSG00000091091.2, intron 1 of 3) protein_coding-intron (ENSMUSG00000091091.2, intron 1 of 3) 1875 ENSMUSG00000091091.2 ENSMUSG00000091091 ENSMUST00000164954 Kcnmb3 protein_coding Interval_15612 chr10 52301770 52302605 + 0 NA intron (ENSMUSG00000019891.15, intron 4 of 9) protein_coding-intron (ENSMUSG00000019891.15, intron 5 of 10) 41470 ENSMUSG00000112550.1 ENSMUSG00000112550 ENSMUST00000218299 Gm6627 processed_pseudogene Interval_150217 chr7 108232836 108234229 + 0 NA Intergenic Intergenic -18896 ENSMUSG00000095929.2 ENSMUSG00000095929 ENSMUST00000081996 Olfr487 protein_coding Interval_33097 chr11 114415991 114416501 + 0 NA exon (ENSMUSG00000062391.3, exon 2 of 2) lincRNA-exon (ENSMUSG00000062391.3, exon 2 of 2) 32614 ENSMUSG00000062391.3 ENSMUSG00000062391 ENSMUST00000141088 4932435O22Rik lincRNA Interval_83229 chr18 82890637 82891224 + 0 NA Intergenic Intergenic -11148 ENSMUSG00000117762.1 ENSMUSG00000117762 ENSMUST00000236957 Gm30889 lincRNA Interval_30654 chr11 95702599 95702961 + 0 NA intron (ENSMUSG00000086191.1, intron 1 of 1) antisense-intron (ENSMUSG00000086191.1, intron 1 of 1) -3637 ENSMUSG00000045075.3 ENSMUSG00000045075 ENSMUST00000191115 Gm9796 lincRNA Interval_129549 chr5 120853114 120853678 + 0 NA intron (ENSMUSG00000053765.4, intron 3 of 5) protein_coding-intron (ENSMUSG00000053765.4, intron 3 of 5) -1100 ENSMUSG00000092939.1 ENSMUSG00000092939 ENSMUST00000175198 Gm22907 miRNA Interval_1652 chr1 30816026 30816598 + 0 NA exon (ENSMUSG00000048874.15, exon 6 of 6) protein_coding-exon (ENSMUSG00000048874.15, exon 6 of 6) -5600 ENSMUSG00000048874.15 ENSMUSG00000048874 ENSMUST00000185604 Phf3 protein_coding Interval_139363 chr6 99453829 99454514 + 0 NA intron (ENSMUSG00000030068.4, intron 1 of 1) protein_coding-intron (ENSMUSG00000030068.4, intron 3 of 5) 30531 ENSMUSG00000088699.1 ENSMUSG00000088699 ENSMUST00000158074 Gm22328 miRNA Interval_142348 chr6 140765529 140767024 + 0 NA Intergenic Intergenic 18428 ENSMUSG00000108039.1 ENSMUSG00000108039 ENSMUST00000203498 Gm43925 processed_pseudogene Interval_31625 chr11 101806572 101807886 + 0 NA Intergenic Intergenic -21919 ENSMUSG00000017724.14 ENSMUSG00000017724 ENSMUST00000154512 Etv4 protein_coding Interval_2904 chr1 48897961 48898204 + 0 NA Intergenic Intergenic 16369 ENSMUSG00000097883.1 ENSMUSG00000097883 ENSMUST00000181115 Gm8357 processed_pseudogene Interval_38575 chr12 80208545 80211157 + 0 NA intron (ENSMUSG00000015143.15, intron 1 of 20) protein_coding-intron (ENSMUSG00000015143.15, intron 1 of 20) 608 ENSMUSG00000112852.1 ENSMUSG00000112852 ENSMUST00000218235 Gm47767 antisense Interval_67695 chr16 56009774 56010136 + 0 NA intron (ENSMUSG00000071533.11, intron 4 of 4) protein_coding-intron (ENSMUSG00000071533.11, intron 4 of 4) 4763 ENSMUSG00000022601.11 ENSMUSG00000022601 ENSMUST00000184618 Zbtb11 protein_coding Interval_135950 chr6 49047701 49047972 + 0 NA exon (ENSMUSG00000029816.10, exon 6 of 11) protein_coding-exon (ENSMUSG00000029816.10, exon 6 of 11) 11290 ENSMUSG00000029816.10 ENSMUSG00000029816 ENSMUST00000204460 Gpnmb protein_coding Interval_131828 chr5 140166168 140166406 + 0 NA TTS (ENSMUSG00000029554.15) protein_coding-TTS (ENSMUSG00000029554.15) 8631 ENSMUSG00000029554.15 ENSMUSG00000029554 ENSMUST00000132832 Mad1l1 protein_coding Interval_24323 chr11 32357194 32357815 + 0 NA intron (ENSMUSG00000040711.8, intron 1 of 13) protein_coding-intron (ENSMUSG00000040711.8, intron 1 of 12) 9684 ENSMUSG00000040711.8 ENSMUSG00000040711 ENSMUST00000138771 Sh3pxd2b protein_coding Interval_154983 chr8 25483660 25483919 + 0 NA intron (ENSMUSG00000110063.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000110063.1, intron 1 of 2) 3796 ENSMUSG00000110063.1 ENSMUSG00000110063 ENSMUST00000211266 Gm31045 lincRNA Interval_26342 chr11 56762344 56763140 + 0 NA Intergenic Intergenic 279793 ENSMUSG00000088228.1 ENSMUSG00000088228 ENSMUST00000157603 Gm22603 snoRNA Interval_1907 chr1 34468177 34468675 + 0 NA TTS (ENSMUSG00000100280.2) processed_transcript-TTS (ENSMUSG00000100280.2) 2008 ENSMUSG00000100280.2 ENSMUSG00000100280 ENSMUST00000185881 Gm28417 processed_transcript Interval_745 chr1 10441971 10442504 + 0 NA intron (ENSMUSG00000042501.12, intron 5 of 9) protein_coding-intron (ENSMUSG00000042501.12, intron 6 of 10) 9752 ENSMUSG00000103810.1 ENSMUSG00000103810 ENSMUST00000194845 Gm38005 TEC Interval_39550 chr12 90390733 90391584 + 0 NA Intergenic Intergenic 7504 ENSMUSG00000113539.1 ENSMUSG00000113539 ENSMUST00000221123 Gm47684 lincRNA Interval_36440 chr12 44622549 44624260 + 0 NA promoter-TSS (ENSMUSG00000112823.1) processed_pseudogene-promoter-TSS (ENSMUSG00000112823.1) -742 ENSMUSG00000112823.1 ENSMUSG00000112823 ENSMUST00000217983 Gm6125 processed_pseudogene Interval_69121 chr16 90782050 90782828 + 0 NA TTS (ENSMUSG00000039929.14) protein_coding-TTS (ENSMUSG00000039929.14) 27953 ENSMUSG00000039929.14 ENSMUSG00000039929 ENSMUST00000128989 Urb1 protein_coding Interval_98161 chr2 148900232 148900652 + 0 NA Intergenic Intergenic -10154 ENSMUSG00000103559.1 ENSMUSG00000103559 ENSMUST00000195146 Gm38221 TEC Interval_73511 chr17 38430070 38430253 + 0 NA Intergenic Intergenic -9976 ENSMUSG00000092322.8 ENSMUSG00000092322 ENSMUST00000177882 Esp36 protein_coding Interval_52974 chr14 52517130 52517670 + 0 NA Intergenic Intergenic -8318 ENSMUSG00000106131.2 ENSMUSG00000106131 ENSMUST00000198892 Gm36382 processed_pseudogene Interval_86215 chr19 37855865 37856070 + 0 NA Intergenic Intergenic -14303 ENSMUSG00000118115.1 ENSMUSG00000118115 ENSMUST00000237198 Gm4757 processed_pseudogene Interval_166402 chr9 59057479 59058602 + 0 NA Intergenic Intergenic -21613 ENSMUSG00000032340.8 ENSMUSG00000032340 ENSMUST00000216964 Neo1 protein_coding Interval_165891 chr9 54307199 54307499 + 0 NA intron (ENSMUSG00000046167.5, intron 1 of 9) protein_coding-intron (ENSMUSG00000046167.5, intron 1 of 9) -5779 ENSMUSG00000074343.3 ENSMUSG00000074343 ENSMUST00000149237 Gldnos antisense Interval_2286 chr1 37678116 37678647 + 0 NA intron (ENSMUSG00000026090.16, intron 1 of 3) protein_coding-intron (ENSMUSG00000026090.16, intron 1 of 3) 17659 ENSMUSG00000104365.1 ENSMUSG00000104365 ENSMUST00000192005 4930470B04Rik TEC Interval_33546 chr11 117129104 117130207 + 0 NA TTS (ENSMUSG00000020823.16) protein_coding-TTS (ENSMUSG00000020823.16) -2835 ENSMUSG00000089343.1 ENSMUSG00000089343 ENSMUST00000158718 Gm22667 misc_RNA Interval_24148 chr11 30734233 30736893 + 0 NA Intergenic Intergenic -15269 ENSMUSG00000087474.1 ENSMUSG00000087474 ENSMUST00000150255 Gm12100 processed_transcript Interval_103320 chr3 38712411 38712786 + 0 NA Intergenic Intergenic 98351 ENSMUSG00000106168.1 ENSMUSG00000106168 ENSMUST00000200416 Gm43538 lincRNA Interval_160617 chr8 111073636 111074038 + 0 NA intron (ENSMUSG00000033633.15, intron 7 of 18) protein_coding-intron (ENSMUSG00000033633.15, intron 7 of 12) 8251 ENSMUSG00000033633.15 ENSMUSG00000033633 ENSMUST00000190222 Clec18a protein_coding Interval_161676 chr8 121949904 121951573 + 0 NA promoter-TSS (ENSMUSG00000098184.1) bidirectional_promoter_lncRNA-promoter-TSS (ENSMUSG00000098184.1) -93 ENSMUSG00000098184.1 ENSMUSG00000098184 ENSMUST00000182352 Gm27011 bidirectional_promoter_lncRNA Interval_38875 chr12 83548838 83549636 + 0 NA intron (ENSMUSG00000042628.8, intron 12 of 12) protein_coding-intron (ENSMUSG00000042628.8, intron 11 of 11) 23237 ENSMUSG00000021222.9 ENSMUSG00000021222 ENSMUST00000221944 Dcaf4 protein_coding Interval_101430 chr2 181332426 181334430 + 0 NA intron (ENSMUSG00000038685.18, intron 2 of 27) protein_coding-intron (ENSMUSG00000038685.18, intron 8 of 32) -2508 ENSMUSG00000038685.18 ENSMUSG00000038685 ENSMUST00000134651 Rtel1 protein_coding Interval_75345 chr17 66036433 66037038 + 0 NA TTS (ENSMUSG00000034647.15) protein_coding-TTS (ENSMUSG00000034647.15) 31030 ENSMUSG00000117074.1 ENSMUSG00000117074 ENSMUST00000233477 Gm49925 processed_pseudogene Interval_29168 chr11 80958177 80958978 + 0 NA intron (ENSMUSG00000020704.13, intron 2 of 9) protein_coding-intron (ENSMUSG00000020704.13, intron 2 of 9) -88217 ENSMUSG00000082027.1 ENSMUSG00000082027 ENSMUST00000119111 Gm11416 processed_pseudogene Interval_26975 chr11 62001944 62002514 + 0 NA intron (ENSMUSG00000042331.13, intron 1 of 3) protein_coding-intron (ENSMUSG00000042331.13, intron 1 of 2) -16635 ENSMUSG00000042331.13 ENSMUSG00000042331 ENSMUST00000202179 Specc1 protein_coding Interval_129882 chr5 122907128 122908013 + 0 NA exon (ENSMUSG00000105979.1, exon 1 of 1) TEC-exon (ENSMUSG00000105979.1, exon 1 of 1) 830 ENSMUSG00000105979.1 ENSMUSG00000105979 ENSMUST00000196235 Gm43411 TEC Interval_99707 chr2 164418616 164419769 + 0 NA Intergenic Intergenic -14579 ENSMUSG00000016995.17 ENSMUSG00000016995 ENSMUST00000154940 Matn4 protein_coding Interval_44703 chr13 47288223 47288987 + 0 NA Intergenic Intergenic 52334 ENSMUSG00000114958.1 ENSMUSG00000114958 ENSMUST00000224746 Gm48612 lincRNA Interval_63817 chr16 3699052 3699940 + 0 NA Intergenic Intergenic 18589 ENSMUSG00000022534.14 ENSMUSG00000022534 ENSMUST00000100222 Mefv protein_coding Interval_153227 chr7 142636545 142637005 + 0 NA Intergenic Intergenic 18221 ENSMUSG00000070140.1 ENSMUSG00000070140 ENSMUST00000093631 Mir483 miRNA Interval_136289 chr6 52577199 52577527 + 0 NA intron (ENSMUSG00000029776.11, intron 3 of 5) protein_coding-intron (ENSMUSG00000029776.11, intron 4 of 7) 16811 ENSMUSG00000107647.1 ENSMUSG00000107647 ENSMUST00000204075 Gm44445 TEC Interval_6739 chr1 119090032 119090251 + 0 NA Intergenic Intergenic 31672 ENSMUSG00000097408.1 ENSMUSG00000097408 ENSMUST00000181458 Gm26831 lincRNA Interval_117050 chr4 119227084 119227661 + 0 NA intron (ENSMUSG00000078584.9, intron 3 of 4) protein_coding-intron (ENSMUSG00000078584.9, intron 4 of 5) 4198 ENSMUSG00000085626.1 ENSMUSG00000085626 ENSMUST00000144407 Gm12898 processed_transcript Interval_101023 chr2 174299240 174300933 + 0 NA exon (ENSMUSG00000027523.20, exon 1 of 12) protein_coding-exon (ENSMUSG00000027523.20, exon 1 of 12) -4650 ENSMUSG00000086537.7 ENSMUSG00000086537 ENSMUST00000143738 Gnasas1 antisense Interval_7195 chr1 127695904 127697156 + 0 NA Intergenic Intergenic -16982 ENSMUSG00000026347.13 ENSMUSG00000026347 ENSMUST00000162406 Tmem163 protein_coding Interval_80290 chr18 38888187 38888807 + 0 NA intron (ENSMUSG00000036585.16, intron 1 of 4) protein_coding-intron (ENSMUSG00000036585.16, intron 1 of 3) -4220 ENSMUSG00000117994.1 ENSMUSG00000117994 ENSMUST00000156167 Gm5820 lincRNA Interval_46850 chr13 72497099 72498007 + 0 NA Intergenic Intergenic -24984 ENSMUSG00000113858.1 ENSMUSG00000113858 ENSMUST00000221407 Gm4057 processed_pseudogene Interval_9923 chr1 164128609 164128828 + 0 NA intron (ENSMUSG00000026580.16, intron 5 of 15) protein_coding-intron (ENSMUSG00000026580.16, intron 5 of 15) 13454 ENSMUSG00000026580.16 ENSMUSG00000026580 ENSMUST00000162102 Selp protein_coding Interval_123440 chr5 32584688 32585107 + 0 NA intron (ENSMUSG00000085234.1, intron 1 of 3) antisense-intron (ENSMUSG00000085234.1, intron 1 of 3) -26274 ENSMUSG00000014932.15 ENSMUSG00000014932 ENSMUST00000200999 Yes1 protein_coding Interval_499 chr1 6440819 6441926 + 0 NA promoter-TSS (ENSMUSG00000103845.1) processed_pseudogene-promoter-TSS (ENSMUSG00000103845.1) -76 ENSMUSG00000103845.1 ENSMUSG00000103845 ENSMUST00000194240 Gm19026 processed_pseudogene Interval_31964 chr11 104209058 104209407 + 0 NA Intergenic Intergenic -22347 ENSMUSG00000018411.17 ENSMUSG00000018411 ENSMUST00000126820 Mapt protein_coding Interval_82955 chr18 79986671 79986960 + 0 NA Intergenic Intergenic -25575 ENSMUSG00000117759.1 ENSMUSG00000117759 ENSMUST00000235145 AA684185 transcribed_processed_pseudogene Interval_90578 chr2 31230317 31231795 + 0 NA Intergenic Intergenic -15110 ENSMUSG00000062661.6 ENSMUSG00000062661 ENSMUST00000150670 Ncs1 protein_coding Interval_94569 chr2 92322677 92323227 + 0 NA intron (ENSMUSG00000058318.15, intron 3 of 13) protein_coding-intron (ENSMUSG00000058318.15, intron 5 of 15) 10798 ENSMUSG00000081730.1 ENSMUSG00000081730 ENSMUST00000119099 Gm13785 processed_pseudogene Interval_2253 chr1 37401654 37403065 + 0 NA intron (ENSMUSG00000026113.17, intron 9 of 9) protein_coding-intron (ENSMUSG00000026113.17, intron 25 of 25) 27641 ENSMUSG00000026112.7 ENSMUSG00000026112 ENSMUST00000192179 Coa5 protein_coding Interval_49702 chr13 114087857 114088871 + 0 NA intron (ENSMUSG00000042348.10, intron 5 of 5) protein_coding-intron (ENSMUSG00000042348.10, intron 4 of 4) 32052 ENSMUSG00000114696.1 ENSMUSG00000114696 ENSMUST00000223997 Gm47479 TEC Interval_173499 chrX 96072940 96073274 + 0 NA Intergenic Intergenic -22950 ENSMUSG00000031207.16 ENSMUSG00000031207 ENSMUST00000135027 Msn protein_coding Interval_38383 chr12 78233442 78234343 + 0 NA intron (ENSMUSG00000047454.12, intron 1 of 22) protein_coding-intron (ENSMUSG00000047454.12, intron 1 of 23) -7367 ENSMUSG00000112302.1 ENSMUSG00000112302 ENSMUST00000219034 Gm48226 bidirectional_promoter_lncRNA Interval_37263 chr12 63761030 63761415 + 0 NA Intergenic Intergenic 151354 ENSMUSG00000064958.1 ENSMUSG00000064958 ENSMUST00000083024 Gm24921 snRNA Interval_150654 chr7 113119297 113119611 + 0 NA promoter-TSS (ENSMUSG00000088671.1) rRNA-promoter-TSS (ENSMUSG00000088671.1) -244 ENSMUSG00000088671.1 ENSMUSG00000088671 ENSMUST00000158046 Gm23662 rRNA Interval_5848 chr1 92520055 92520448 + 0 NA Intergenic Intergenic -1832 ENSMUSG00000042849.11 ENSMUSG00000042849 ENSMUST00000189174 Olfr1414 protein_coding Interval_78279 chr18 11486221 11487406 + 0 NA Intergenic Intergenic -138102 ENSMUSG00000117535.1 ENSMUSG00000117535 ENSMUST00000234170 Gm50067 processed_pseudogene Interval_1482 chr1 23993694 23995768 + 0 NA Intergenic Intergenic -10776 ENSMUSG00000102495.1 ENSMUSG00000102495 ENSMUST00000195143 Gm26524 TEC Interval_98843 chr2 155495795 155496021 + 0 NA TTS (ENSMUSG00000027603.15) protein_coding-TTS (ENSMUSG00000027603.15) -9539 ENSMUSG00000083341.1 ENSMUSG00000083341 ENSMUST00000120227 Gm14238 processed_pseudogene Interval_39692 chr12 92707852 92708379 + 0 NA Intergenic Intergenic -234154 ENSMUSG00000113499.1 ENSMUSG00000113499 ENSMUST00000223493 Gm18500 processed_pseudogene Interval_39969 chr12 100154339 100154581 + 0 NA intron (ENSMUSG00000021179.8, intron 1 of 4) protein_coding-intron (ENSMUSG00000021179.8, intron 1 of 13) -24688 ENSMUSG00000021179.8 ENSMUSG00000021179 ENSMUST00000221954 Nrde2 protein_coding Interval_52499 chr14 47093162 47093605 + 0 NA intron (ENSMUSG00000021838.17, intron 11 of 12) protein_coding-intron (ENSMUSG00000021838.17, intron 11 of 12) 22688 ENSMUSG00000072589.4 ENSMUSG00000072589 ENSMUST00000228010 Gm10371 antisense Interval_79570 chr18 33822148 33822978 + 0 NA intron (ENSMUSG00000024376.7, intron 6 of 7) protein_coding-intron (ENSMUSG00000024376.7, intron 18 of 23) 27399 ENSMUSG00000092819.1 ENSMUSG00000092819 ENSMUST00000175078 Gm23639 snoRNA Interval_82492 chr18 74463761 74464203 + 0 NA intron (ENSMUSG00000025885.18, intron 1 of 39) protein_coding-intron (ENSMUSG00000025885.18, intron 1 of 38) 43177 ENSMUSG00000118303.1 ENSMUSG00000118303 ENSMUST00000235981 Gm50168 processed_pseudogene Interval_151535 chr7 123335938 123337530 + 0 NA intron (ENSMUSG00000030766.15, intron 1 of 19) protein_coding-intron (ENSMUSG00000030766.15, intron 1 of 18) 33117 ENSMUSG00000030766.15 ENSMUSG00000030766 ENSMUST00000205805 Arhgap17 protein_coding Interval_49932 chr13 118454047 118454303 + 0 NA Intergenic Intergenic 56738 ENSMUSG00000114668.1 ENSMUSG00000114668 ENSMUST00000225301 Gm47563 processed_pseudogene Interval_55927 chr14 102810231 102810526 + 0 NA Intergenic Intergenic 4279 ENSMUSG00000088971.1 ENSMUSG00000088971 ENSMUST00000158346 Gm23764 rRNA Interval_37358 chr12 65464441 65464628 + 0 NA Intergenic Intergenic -58564 ENSMUSG00000077590.1 ENSMUSG00000077590 ENSMUST00000104402 Gm26015 snoRNA Interval_2234 chr1 37250621 37251106 + 0 NA intron (ENSMUSG00000026114.14, intron 4 of 6) protein_coding-intron (ENSMUSG00000026114.14, intron 3 of 5) 32484 ENSMUSG00000026114.14 ENSMUSG00000026114 ENSMUST00000027288 Cnga3 protein_coding Interval_145933 chr7 42450388 42451394 + 0 NA Intergenic Intergenic -2788 ENSMUSG00000030463.5 ENSMUSG00000030463 ENSMUST00000206593 4933421I07Rik protein_coding Interval_60326 chr15 72917146 72917859 + 0 NA intron (ENSMUSG00000047921.17, intron 15 of 16) protein_coding-intron (ENSMUSG00000047921.17, intron 15 of 21) 4145 ENSMUSG00000096173.2 ENSMUSG00000096173 ENSMUST00000166418 Gm3150 processed_pseudogene Interval_67631 chr16 54464809 54465491 + 0 NA Intergenic Intergenic 110688 ENSMUSG00000064727.1 ENSMUSG00000064727 ENSMUST00000082793 Gm25853 snoRNA Interval_172572 chrX 36877928 36878165 + 0 NA intron (ENSMUSG00000016308.12, intron 3 of 4) protein_coding-intron (ENSMUSG00000016308.12, intron 3 of 5) 3715 ENSMUSG00000016308.12 ENSMUSG00000016308 ENSMUST00000201050 Ube2a protein_coding Interval_42803 chr13 19721559 19721809 + 0 NA Intergenic Intergenic 11267 ENSMUSG00000047462.9 ENSMUSG00000047462 ENSMUST00000151029 Gpr141b protein_coding Interval_148607 chr7 83185643 83186944 + 0 NA intron (ENSMUSG00000108861.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000108861.1, intron 1 of 1) 14031 ENSMUSG00000108861.1 ENSMUSG00000108861 ENSMUST00000207572 5930435M05Rik lincRNA Interval_54203 chr14 66207929 66208526 + 0 NA intron (ENSMUSG00000059456.13, intron 1 of 29) protein_coding-intron (ENSMUSG00000059456.13, intron 2 of 30) 5325 ENSMUSG00000059456.13 ENSMUSG00000059456 ENSMUST00000127083 Ptk2b protein_coding Interval_89238 chr2 18299310 18299579 + 0 NA intron (ENSMUSG00000026740.12, intron 1 of 6) protein_coding-intron (ENSMUSG00000026740.12, intron 5 of 10) 39545 ENSMUSG00000082520.2 ENSMUSG00000082520 ENSMUST00000118436 Gm13349 processed_pseudogene Interval_138108 chr6 85234707 85235027 + 0 NA intron (ENSMUSG00000033720.12, intron 3 of 4) protein_coding-intron (ENSMUSG00000033720.12, intron 11 of 13) 41348 ENSMUSG00000033726.8 ENSMUSG00000033726 ENSMUST00000173919 Emx1 protein_coding Interval_146584 chr7 47041344 47041549 + 0 NA Intergenic Intergenic 8850 ENSMUSG00000109634.1 ENSMUSG00000109634 ENSMUST00000209471 Gm45474 lincRNA Interval_47967 chr13 94717272 94718409 + 0 NA Intergenic Intergenic -15122 ENSMUSG00000113904.1 ENSMUSG00000113904 ENSMUST00000220503 Gm32351 lincRNA Interval_56818 chr14 122257656 122259434 + 0 NA intron (ENSMUSG00000025545.10, intron 1 of 7) protein_coding-intron (ENSMUSG00000025545.10, intron 1 of 7) 504 ENSMUSG00000025545.10 ENSMUSG00000025545 ENSMUST00000226136 Clybl protein_coding Interval_123130 chr5 29997952 29999499 + 0 NA intron (ENSMUSG00000105439.1, intron 2 of 2) lincRNA-intron (ENSMUSG00000105439.1, intron 2 of 2) 10073 ENSMUSG00000105439.1 ENSMUSG00000105439 ENSMUST00000199600 A230098N10Rik lincRNA Interval_49374 chr13 111540974 111542530 + 0 NA intron (ENSMUSG00000085634.2, intron 1 of 1) lincRNA-intron (ENSMUSG00000085634.2, intron 1 of 1) 8159 ENSMUSG00000085634.2 ENSMUSG00000085634 ENSMUST00000132880 Gm15290 lincRNA Interval_73423 chr17 37130149 37130458 + 0 NA promoter-TSS (ENSMUSG00000092223.1) processed_pseudogene-promoter-TSS (ENSMUSG00000092223.1) -606 ENSMUSG00000092223.1 ENSMUSG00000092223 ENSMUST00000173971 Gm19807 processed_pseudogene Interval_126284 chr5 86065062 86067152 + 0 NA promoter-TSS (ENSMUSG00000029253.12) protein_coding-promoter-TSS (ENSMUSG00000029253.12) -556 ENSMUSG00000029253.12 ENSMUSG00000029253 ENSMUST00000199141 Cenpc1 protein_coding Interval_19350 chr10 97427760 97428225 + 0 NA Intergenic Intergenic 4514 ENSMUSG00000105557.1 ENSMUSG00000105557 ENSMUST00000198473 Mir3966 miRNA Interval_55415 chr14 86982288 86982563 + 0 NA intron (ENSMUSG00000022021.14, intron 11 of 15) protein_coding-intron (ENSMUSG00000022021.14, intron 12 of 27) -61714 ENSMUSG00000077948.2 ENSMUSG00000077948 ENSMUST00000104755 Gm23438 miRNA Interval_158088 chr8 78649103 78649274 + 0 NA intron (ENSMUSG00000031684.11, intron 1 of 2) protein_coding-intron (ENSMUSG00000031684.11, intron 5 of 11) 44894 ENSMUSG00000110244.1 ENSMUSG00000110244 ENSMUST00000211775 Gm2253 processed_pseudogene Interval_144938 chr7 29017002 29017771 + 0 NA intron (ENSMUSG00000030592.18, intron 96 of 108) protein_coding-intron (ENSMUSG00000030592.18, intron 93 of 105) -11637 ENSMUSG00000109017.1 ENSMUSG00000109017 ENSMUST00000207099 Gm38979 antisense Interval_81901 chr18 65697730 65698803 + 0 NA promoter-TSS (ENSMUSG00000046610.15) protein_coding-promoter-TSS (ENSMUSG00000046610.15) -18 ENSMUSG00000046610.15 ENSMUSG00000046610 ENSMUST00000134343 Oacyl protein_coding Interval_159873 chr8 104540466 104541762 + 0 NA promoter-TSS (ENSMUSG00000031883.13) protein_coding-promoter-TSS (ENSMUSG00000031883.13) 6425 ENSMUSG00000031883.13 ENSMUSG00000031883 ENSMUST00000162399 Car7 protein_coding Interval_36893 chr12 55006232 55006756 + 0 NA intron (ENSMUSG00000035021.13, intron 1 of 3) protein_coding-intron (ENSMUSG00000035021.13, intron 1 of 3) 9422 ENSMUSG00000088922.1 ENSMUSG00000088922 ENSMUST00000158297 Gm24296 snRNA Interval_169415 chr9 97073717 97074420 + 0 NA TTS (ENSMUSG00000032449.13) protein_coding-TTS (ENSMUSG00000032449.13) -6761 ENSMUSG00000101365.1 ENSMUSG00000101365 ENSMUST00000186238 Gm19325 lincRNA Interval_101804 chr3 9629397 9630719 + 0 NA Intergenic Intergenic -26462 ENSMUSG00000103876.1 ENSMUSG00000103876 ENSMUST00000195844 Gm17806 processed_pseudogene Interval_61837 chr15 84538546 84539615 + 0 NA Intergenic Intergenic 18743 ENSMUSG00000055745.4 ENSMUSG00000055745 ENSMUST00000069476 Rtl6 protein_coding Interval_48474 chr13 99317182 99317461 + 0 NA Intergenic Intergenic 27384 ENSMUSG00000021650.7 ENSMUSG00000021650 ENSMUST00000022153 Ptcd2 protein_coding Interval_102602 chr3 28220098 28220806 + 0 NA Intergenic Intergenic -25071 ENSMUSG00000103729.1 ENSMUSG00000103729 ENSMUST00000192290 Gm37098 processed_pseudogene Interval_9088 chr1 153507654 153508299 + 0 NA intron (ENSMUSG00000042684.8, intron 11 of 11) protein_coding-intron (ENSMUSG00000042684.8, intron 11 of 11) -29837 ENSMUSG00000042699.11 ENSMUSG00000042699 ENSMUST00000189425 Dhx9 protein_coding Interval_88342 chr2 4153153 4153555 + 0 NA intron (ENSMUSG00000026657.17, intron 1 of 22) protein_coding-intron (ENSMUSG00000026657.17, intron 1 of 22) -12213 ENSMUSG00000084859.7 ENSMUSG00000084859 ENSMUST00000154360 1700080N15Rik antisense Interval_63981 chr16 4987241 4987428 + 0 NA TTS (ENSMUSG00000022542.7) protein_coding-TTS (ENSMUSG00000022542.7) 10429 ENSMUSG00000022542.7 ENSMUSG00000022542 ENSMUST00000230878 Septin12 protein_coding Interval_73597 chr17 40925362 40926120 + 0 NA TTS (ENSMUSG00000023919.8) protein_coding-TTS (ENSMUSG00000023919.8) -8054 ENSMUSG00000088473.1 ENSMUSG00000088473 ENSMUST00000157848 Gm23078 snRNA Interval_103563 chr3 49710978 49711195 + 0 NA Intergenic Intergenic 46197 ENSMUSG00000037892.13 ENSMUSG00000037892 ENSMUST00000195086 Pcdh18 protein_coding Interval_154028 chr8 12036294 12037036 + 0 NA Intergenic Intergenic 88326 ENSMUSG00000109995.1 ENSMUSG00000109995 ENSMUST00000209977 B020031H02Rik lincRNA Interval_70390 chr17 9679727 9679986 + 0 NA Intergenic Intergenic -10139 ENSMUSG00000046173.3 ENSMUSG00000046173 ENSMUST00000057190 Pabpc6 protein_coding Interval_26520 chr11 58345169 58346292 + 0 NA intron (ENSMUSG00000013646.17, intron 4 of 4) protein_coding-intron (ENSMUSG00000013646.17, intron 6 of 6) 14455 ENSMUSG00000013646.17 ENSMUSG00000013646 ENSMUST00000127119 Sh3bp5l protein_coding Interval_126368 chr5 87349602 87350738 + 0 NA Intergenic Intergenic -5665 ENSMUSG00000105192.1 ENSMUSG00000105192 ENSMUST00000199913 Gm42796 TEC Interval_11272 chr1 180620896 180621196 + 0 NA Intergenic Intergenic 22058 ENSMUSG00000026496.11 ENSMUSG00000026496 ENSMUST00000195560 Parp1 protein_coding Interval_28856 chr11 78798544 78800050 + 0 NA Intergenic Intergenic -25090 ENSMUSG00000088748.1 ENSMUSG00000088748 ENSMUST00000158123 Gm23219 snRNA Interval_76858 chr17 84566264 84567988 + 0 NA promoter-TSS (ENSMUSG00000117391.1) antisense-promoter-TSS (ENSMUSG00000117391.1) -8424 ENSMUSG00000040852.6 ENSMUSG00000040852 ENSMUST00000235090 Plekhh2 protein_coding Interval_113437 chr4 54986217 54988198 + 0 NA intron (ENSMUSG00000060206.11, intron 1 of 12) protein_coding-intron (ENSMUSG00000060206.11, intron 1 of 12) 42159 ENSMUSG00000060206.11 ENSMUSG00000060206 ENSMUST00000079605 Zfp462 protein_coding Interval_160615 chr8 111061880 111062869 + 0 NA exon (ENSMUSG00000033633.15, exon 16 of 19) protein_coding-exon (ENSMUSG00000033633.15, exon 16 of 19) 2034 ENSMUSG00000118613.1 ENSMUSG00000118613 ENSMUST00000214924 AC093451.1 unitary_pseudogene Interval_162770 chr9 8851481 8851784 + 0 NA Intergenic Intergenic -48201 ENSMUSG00000031870.16 ENSMUSG00000031870 ENSMUST00000098986 Pgr protein_coding Interval_53476 chr14 57732411 57733279 + 0 NA intron (ENSMUSG00000021959.16, intron 2 of 8) protein_coding-intron (ENSMUSG00000021959.16, intron 2 of 7) 13258 ENSMUSG00000114942.1 ENSMUSG00000114942 ENSMUST00000174694 Gm49361 protein_coding Interval_5222 chr1 86533584 86534114 + 0 NA Intergenic Intergenic 7112 ENSMUSG00000026238.14 ENSMUSG00000026238 ENSMUST00000188533 Ptma protein_coding Interval_123910 chr5 36452826 36453951 + 0 NA intron (ENSMUSG00000039563.6, intron 2 of 2) lincRNA-intron (ENSMUSG00000039563.6, intron 2 of 2) 11465 ENSMUSG00000039563.6 ENSMUSG00000039563 ENSMUST00000151434 2210406O10Rik lincRNA Interval_133088 chr5 149731731 149732012 + 0 NA intron (ENSMUSG00000051950.10, intron 7 of 14) protein_coding-intron (ENSMUSG00000051950.10, intron 7 of 14) -7661 ENSMUSG00000051950.10 ENSMUSG00000051950 ENSMUST00000201088 B3glct protein_coding Interval_59412 chr15 52642532 52642769 + 0 NA Intergenic Intergenic -69758 ENSMUSG00000038622.8 ENSMUSG00000038622 ENSMUST00000037115 Med30 protein_coding Interval_57094 chr15 6209442 6209950 + 0 NA Intergenic Intergenic -58348 ENSMUSG00000094402.1 ENSMUSG00000094402 ENSMUST00000179454 Gm23139 snoRNA Interval_139764 chr6 108512839 108513081 + 0 NA TTS (ENSMUSG00000030102.11) protein_coding-TTS (ENSMUSG00000030102.11) 12727 ENSMUSG00000107458.1 ENSMUSG00000107458 ENSMUST00000203360 Gm44040 antisense Interval_161277 chr8 119454336 119454537 + 0 NA exon (ENSMUSG00000031837.14, exon 5 of 13) protein_coding-exon (ENSMUSG00000031837.14, exon 5 of 13) 2004 ENSMUSG00000031837.14 ENSMUSG00000031837 ENSMUST00000148328 Necab2 protein_coding Interval_109380 chr3 140990880 140991125 + 0 NA Intergenic Intergenic 39126 ENSMUSG00000106540.1 ENSMUSG00000106540 ENSMUST00000196030 4930590L14Rik lincRNA Interval_144072 chr7 19303713 19304049 + 0 NA TTS (ENSMUSG00000003545.3) protein_coding-TTS (ENSMUSG00000003545.3) -3111 ENSMUSG00000097266.1 ENSMUSG00000097266 ENSMUST00000181066 Gm26802 lincRNA Interval_62027 chr15 85981854 85982575 + 0 NA intron (ENSMUSG00000016028.11, intron 1 of 34) protein_coding-intron (ENSMUSG00000016028.11, intron 1 of 34) -80015 ENSMUSG00000016028.11 ENSMUSG00000016028 ENSMUST00000227450 Celsr1 protein_coding Interval_53559 chr14 59230073 59230430 + 0 NA TTS (ENSMUSG00000035469.17) protein_coding-TTS (ENSMUSG00000035469.17) 12646 ENSMUSG00000035469.17 ENSMUSG00000035469 ENSMUST00000147280 Rcbtb1 protein_coding Interval_33725 chr11 118102687 118104647 + 0 NA intron (ENSMUSG00000033987.16, intron 20 of 80) protein_coding-intron (ENSMUSG00000033987.16, intron 19 of 80) -11188 ENSMUSG00000085511.1 ENSMUSG00000085511 ENSMUST00000134069 Gm11738 antisense Interval_117107 chr4 119580995 119581412 + 0 NA intron (ENSMUSG00000032998.16, intron 3 of 4) protein_coding-intron (ENSMUSG00000032998.16, intron 3 of 12) -27145 ENSMUSG00000081678.1 ENSMUSG00000081678 ENSMUST00000119396 Gm12959 processed_pseudogene Interval_20319 chr10 116865430 116865705 + 0 NA intron (ENSMUSG00000034057.8, intron 1 of 24) protein_coding-intron (ENSMUSG00000034057.8, intron 1 of 24) 31352 ENSMUSG00000034057.8 ENSMUSG00000034057 ENSMUST00000048229 Myrfl protein_coding Interval_30531 chr11 94964035 94964386 + 0 NA intron (ENSMUSG00000001508.15, intron 9 of 9) protein_coding-intron (ENSMUSG00000001508.15, intron 8 of 9) -3383 ENSMUSG00000038994.6 ENSMUSG00000038994 ENSMUST00000038928 Hils1 protein_coding Interval_119747 chr4 139643868 139644472 + 0 NA TTS (ENSMUSG00000098569.1) miRNA-TTS (ENSMUSG00000098569.1) 128 ENSMUSG00000098569.1 ENSMUSG00000098569 ENSMUST00000183787 Mir7020 miRNA Interval_116009 chr4 106955154 106956959 + 0 NA exon (ENSMUSG00000061887.14, exon 1 of 14) protein_coding-exon (ENSMUSG00000061887.14, exon 1 of 14) 66443 ENSMUSG00000085581.1 ENSMUSG00000085581 ENSMUST00000129617 Gm12786 antisense Interval_36336 chr12 41518804 41519015 + 0 NA intron (ENSMUSG00000056899.10, intron 3 of 5) protein_coding-intron (ENSMUSG00000056899.10, intron 4 of 6) -26482 ENSMUSG00000113766.1 ENSMUSG00000113766 ENSMUST00000222596 Gm47374 TEC Interval_144533 chr7 25745842 25746059 + 0 NA intron (ENSMUSG00000040725.13, intron 4 of 14) protein_coding-intron (ENSMUSG00000040725.13, intron 4 of 14) 8807 ENSMUSG00000040725.13 ENSMUSG00000040725 ENSMUST00000206041 Hnrnpul1 protein_coding Interval_119544 chr4 138291469 138292219 + 0 NA intron (ENSMUSG00000028758.12, intron 8 of 11) protein_coding-intron (ENSMUSG00000028758.12, intron 10 of 14) -12886 ENSMUSG00000028757.4 ENSMUSG00000028757 ENSMUST00000030538 Ddost protein_coding Interval_162458 chr8 128987472 128988007 + 0 NA intron (ENSMUSG00000025808.17, intron 11 of 55) protein_coding-intron (ENSMUSG00000025808.17, intron 11 of 13) -30151 ENSMUSG00000077538.1 ENSMUSG00000077538 ENSMUST00000104350 Gm22545 snoRNA Interval_72465 chr17 29981207 29982124 + 0 NA intron (ENSMUSG00000117528.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000117528.1, intron 1 of 1) 2323 ENSMUSG00000117639.1 ENSMUSG00000117639 ENSMUST00000235061 Gm50018 processed_pseudogene Interval_57478 chr15 11626608 11627169 + 0 NA intron (ENSMUSG00000115076.1, intron 2 of 2) lincRNA-intron (ENSMUSG00000115076.1, intron 2 of 2) -3841 ENSMUSG00000115804.1 ENSMUSG00000115804 ENSMUST00000228129 Gm49107 lincRNA Interval_111650 chr4 25234399 25236225 + 0 NA intron (ENSMUSG00000028259.13, intron 1 of 5) protein_coding-intron (ENSMUSG00000028259.13, intron 1 of 5) 7564 ENSMUSG00000028259.13 ENSMUSG00000028259 ENSMUST00000108204 Fhl5 protein_coding Interval_172842 chrX 51684509 51685156 + 0 NA Intergenic Intergenic -4267 ENSMUSG00000062184.11 ENSMUSG00000062184 ENSMUST00000140145 Hs6st2 protein_coding Interval_78278 chr18 11466819 11467131 + 0 NA Intergenic Intergenic -157940 ENSMUSG00000117535.1 ENSMUSG00000117535 ENSMUST00000234170 Gm50067 processed_pseudogene Interval_142908 chr6 146846188 146847569 + 0 NA exon (ENSMUSG00000107964.1, exon 1 of 1) TEC-exon (ENSMUSG00000107964.1, exon 1 of 1) 325 ENSMUSG00000107964.1 ENSMUSG00000107964 ENSMUST00000204503 4930447C11Rik TEC Interval_33730 chr11 118146301 118147046 + 0 NA intron (ENSMUSG00000017132.17, intron 12 of 13) protein_coding-intron (ENSMUSG00000017132.17, intron 12 of 13) 31818 ENSMUSG00000085511.1 ENSMUSG00000085511 ENSMUST00000134069 Gm11738 antisense Interval_64213 chr16 9229056 9230817 + 0 NA Intergenic Intergenic 71166 ENSMUSG00000116123.1 ENSMUSG00000116123 ENSMUST00000229655 Gm49451 lincRNA Interval_39516 chr12 89134165 89134626 + 0 NA intron (ENSMUSG00000066392.12, intron 2 of 19) protein_coding-intron (ENSMUSG00000066392.12, intron 2 of 19) 120966 ENSMUSG00000103136.1 ENSMUSG00000103136 ENSMUST00000194420 Gm37980 TEC Interval_44735 chr13 48045948 48047037 + 0 NA exon (ENSMUSG00000097622.2, exon 2 of 3) antisense-exon (ENSMUSG00000097622.2, exon 2 of 3) 14719 ENSMUSG00000114810.1 ENSMUSG00000114810 ENSMUST00000223995 Gm36101 lincRNA Interval_69140 chr16 90896743 90897481 + 0 NA intron (ENSMUSG00000039903.18, intron 8 of 9) protein_coding-intron (ENSMUSG00000039903.18, intron 6 of 7) -18068 ENSMUSG00000083226.2 ENSMUSG00000083226 ENSMUST00000117990 Gm7831 processed_pseudogene Interval_101308 chr2 180292266 180293357 + 0 NA Intergenic Intergenic -2932 ENSMUSG00000038980.1 ENSMUSG00000038980 ENSMUST00000038529 Rbbp8nl protein_coding Interval_33408 chr11 116403094 116404984 + 0 NA exon (ENSMUSG00000052949.14, exon 2 of 2) protein_coding-exon (ENSMUSG00000052949.14, exon 2 of 2) 21289 ENSMUSG00000081929.1 ENSMUSG00000081929 ENSMUST00000121547 Rps11-ps2 processed_pseudogene Interval_158386 chr8 83289497 83290743 + 0 NA promoter-TSS (ENSMUSG00000031710.4) protein_coding-promoter-TSS (ENSMUSG00000031710.4) -232 ENSMUSG00000031710.4 ENSMUSG00000031710 ENSMUST00000034146 Ucp1 protein_coding Interval_39499 chr12 88704147 88705083 + 0 NA intron (ENSMUSG00000114001.1, intron 1 of 3) lincRNA-intron (ENSMUSG00000114001.1, intron 1 of 3) 72346 ENSMUSG00000113997.1 ENSMUSG00000113997 ENSMUST00000222440 1700040E09Rik lincRNA Interval_81673 chr18 63098599 63098859 + 0 NA intron (ENSMUSG00000041482.17, intron 18 of 53) protein_coding-intron (ENSMUSG00000041482.17, intron 18 of 53) 69743 ENSMUSG00000118039.1 ENSMUSG00000118039 ENSMUST00000237782 Gm50171 TEC Interval_63809 chr15 103654984 103656373 + 0 NA TTS (ENSMUSG00000115329.1) lincRNA-TTS (ENSMUSG00000115329.1) -2161 ENSMUSG00000115279.1 ENSMUSG00000115279 ENSMUST00000228191 Gm49273 processed_pseudogene Interval_41099 chr12 111164396 111167184 + 0 NA promoter-TSS (ENSMUSG00000021277.16) protein_coding-promoter-TSS (ENSMUSG00000021277.16) 18701 ENSMUSG00000083193.1 ENSMUSG00000083193 ENSMUST00000121608 4930595D18Rik protein_coding Interval_10105 chr1 165840808 165841386 + 0 NA intron (ENSMUSG00000005763.15, intron 1 of 8) protein_coding-intron (ENSMUSG00000005763.15, intron 1 of 7) 3511 ENSMUSG00000102363.1 ENSMUSG00000102363 ENSMUST00000192693 Gm32999 TEC Interval_146106 chr7 43937269 43937616 + 0 NA TTS (ENSMUSG00000108432.1) antisense-TTS (ENSMUSG00000108432.1) 3649 ENSMUSG00000055193.4 ENSMUSG00000055193 ENSMUST00000206955 Klk15 protein_coding Interval_166138 chr9 56972903 56974238 + 0 NA intron (ENSMUSG00000055334.4, intron 5 of 8) protein_coding-intron (ENSMUSG00000055334.4, intron 5 of 8) 22692 ENSMUSG00000055334.4 ENSMUSG00000055334 ENSMUST00000068856 Snupn protein_coding Interval_14263 chr10 30018050 30018237 + 0 NA Intergenic Intergenic 7192 ENSMUSG00000111554.1 ENSMUSG00000111554 ENSMUST00000216549 Gm232 unprocessed_pseudogene Interval_43187 chr13 24949203 24950022 + 0 NA intron (ENSMUSG00000021340.13, intron 3 of 25) protein_coding-intron (ENSMUSG00000021340.13, intron 3 of 25) -11951 ENSMUSG00000035936.6 ENSMUSG00000035936 ENSMUST00000037615 Aldh5a1 protein_coding Interval_16056 chr10 60390031 60391107 + 0 NA intron (ENSMUSG00000012819.15, intron 2 of 8) protein_coding-intron (ENSMUSG00000012819.15, intron 28 of 66) -9335 ENSMUSG00000090439.3 ENSMUSG00000090439 ENSMUST00000218360 Gm17455 protein_coding Interval_7530 chr1 132016828 132017471 + 0 NA promoter-TSS (ENSMUSG00000026436.15) protein_coding-promoter-TSS (ENSMUSG00000026436.15) -659 ENSMUSG00000026436.15 ENSMUSG00000026436 ENSMUST00000131159 Elk4 protein_coding Interval_46611 chr13 67562922 67563134 + 0 NA intron (ENSMUSG00000097360.8, intron 3 of 3) antisense-intron (ENSMUSG00000097360.8, intron 3 of 3) -9198 ENSMUSG00000095432.9 ENSMUSG00000095432 ENSMUST00000053289 Zfp748 protein_coding Interval_50909 chr14 20713776 20714683 + 0 NA exon (ENSMUSG00000021819.11, exon 10 of 26) protein_coding-exon (ENSMUSG00000021819.11, exon 10 of 26) -7382 ENSMUSG00000021819.11 ENSMUSG00000021819 ENSMUST00000225911 Zswim8 protein_coding Interval_45832 chr13 58416200 58416959 + 0 NA Intergenic Intergenic 14331 ENSMUSG00000035367.9 ENSMUSG00000035367 ENSMUST00000224479 Rmi1 protein_coding Interval_17448 chr10 76825786 76826092 + 0 NA promoter-TSS (ENSMUSG00000001120.15) protein_coding-promoter-TSS (ENSMUSG00000001120.15) -37517 ENSMUSG00000001120.15 ENSMUSG00000001120 ENSMUST00000165571 Pcbp3 protein_coding Interval_173487 chrX 95365182 95366073 + 0 NA Intergenic Intergenic 16853 ENSMUSG00000080283.2 ENSMUSG00000080283 ENSMUST00000116606 Gm14806 processed_pseudogene Interval_107043 chr3 103120431 103120875 + 0 NA intron (ENSMUSG00000007379.15, intron 1 of 17) protein_coding-intron (ENSMUSG00000007379.15, intron 1 of 11) 23907 ENSMUSG00000105731.1 ENSMUSG00000105731 ENSMUST00000198198 Gm43063 sense_intronic Interval_7192 chr1 127661104 127661435 + 0 NA intron (ENSMUSG00000026347.13, intron 2 of 7) protein_coding-intron (ENSMUSG00000026347.13, intron 2 of 8) 18279 ENSMUSG00000026347.13 ENSMUSG00000026347 ENSMUST00000162406 Tmem163 protein_coding Interval_114718 chr4 84269791 84269991 + 0 NA Intergenic Intergenic 22039 ENSMUSG00000028487.18 ENSMUSG00000028487 ENSMUST00000176370 Bnc2 protein_coding Interval_25554 chr11 49734486 49734793 + 0 NA Intergenic Intergenic 36759 ENSMUSG00000081570.1 ENSMUSG00000081570 ENSMUST00000120146 Gm12192 processed_pseudogene Interval_143414 chr7 6529255 6529479 + 0 NA Intergenic Intergenic 5144 ENSMUSG00000109466.1 ENSMUSG00000109466 ENSMUST00000207618 Gm7587 processed_pseudogene Interval_45253 chr13 53533238 53534191 + 0 NA promoter-TSS (ENSMUSG00000113834.1) lincRNA-promoter-TSS (ENSMUSG00000113834.1) -457 ENSMUSG00000113834.1 ENSMUSG00000113834 ENSMUST00000223156 Gm34022 lincRNA Interval_81439 chr18 60761605 60761806 + 0 NA intron (ENSMUSG00000024608.11, intron 1 of 5) protein_coding-intron (ENSMUSG00000024608.11, intron 1 of 5) 14607 ENSMUSG00000024608.11 ENSMUSG00000024608 ENSMUST00000122279 Rps14 protein_coding Interval_18537 chr10 87093557 87094998 + 0 NA intron (ENSMUSG00000047129.11, intron 2 of 4) protein_coding-intron (ENSMUSG00000047129.11, intron 2 of 5) 93980 ENSMUSG00000089666.1 ENSMUSG00000089666 ENSMUST00000160532 Gm16269 processed_pseudogene Interval_72209 chr17 28592798 28594283 + 0 NA promoter-TSS (ENSMUSG00000004865.16) protein_coding-promoter-TSS (ENSMUSG00000004865.16) 17780 ENSMUSG00000062252.9 ENSMUSG00000062252 ENSMUST00000232974 Lhfpl5 protein_coding Interval_14661 chr10 38224169 38224985 + 0 NA Intergenic Intergenic -7705 ENSMUSG00000111048.1 ENSMUSG00000111048 ENSMUST00000213786 Gm48173 processed_pseudogene Interval_60948 chr15 78095140 78096193 + 0 NA intron (ENSMUSG00000019146.2, intron 1 of 3) protein_coding-intron (ENSMUSG00000019146.2, intron 1 of 3) -24040 ENSMUSG00000092375.1 ENSMUSG00000092375 ENSMUST00000174277 A730060N03Rik antisense Interval_152618 chr7 135397681 135398326 + 0 NA exon (ENSMUSG00000073803.3, exon 1 of 1) TEC-exon (ENSMUSG00000073803.3, exon 1 of 1) 1668 ENSMUSG00000073803.3 ENSMUSG00000073803 ENSMUST00000097982 4930544L04Rik TEC Interval_81362 chr18 59159108 59159401 + 0 NA Intergenic Intergenic -16199 ENSMUSG00000058152.8 ENSMUSG00000058152 ENSMUST00000080721 Chsy3 protein_coding Interval_102511 chr3 27384980 27385485 + 0 NA Intergenic Intergenic 13881 ENSMUSG00000051136.1 ENSMUSG00000051136 ENSMUST00000057186 Ghsr protein_coding Interval_155008 chr8 25641663 25641880 + 0 NA intron (ENSMUSG00000054823.16, intron 2 of 9) protein_coding-intron (ENSMUSG00000054823.16, intron 1 of 22) 9821 ENSMUSG00000088037.1 ENSMUSG00000088037 ENSMUST00000157412 Gm24992 snoRNA Interval_22568 chr11 11832117 11832335 + 0 NA intron (ENSMUSG00000020182.16, intron 9 of 14) protein_coding-intron (ENSMUSG00000020182.16, intron 9 of 14) -23264 ENSMUSG00000035455.12 ENSMUSG00000035455 ENSMUST00000150714 Fignl1 protein_coding Interval_91288 chr2 37442602 37443741 + 0 NA promoter-TSS (ENSMUSG00000035437.15) protein_coding-promoter-TSS (ENSMUSG00000035437.15) 0 ENSMUSG00000066798.3 ENSMUSG00000066798 ENSMUST00000112932 Zbtb6 protein_coding Interval_28324 chr11 75204438 75205232 + 0 NA intron (ENSMUSG00000045287.6, intron 1 of 1) protein_coding-intron (ENSMUSG00000045287.6, intron 1 of 1) 11052 ENSMUSG00000045287.6 ENSMUSG00000045287 ENSMUST00000102514 Rtn4rl1 protein_coding Interval_91328 chr2 37792938 37794503 + 0 NA TTS (ENSMUSG00000035403.10) protein_coding-TTS (ENSMUSG00000035403.10) 2549 ENSMUSG00000035403.10 ENSMUSG00000035403 ENSMUST00000137693 Crb2 protein_coding Interval_144420 chr7 25042911 25044845 + 0 NA intron (ENSMUSG00000003378.9, intron 13 of 20) protein_coding-intron (ENSMUSG00000003378.9, intron 12 of 19) 28468 ENSMUSG00000003378.9 ENSMUSG00000003378 ENSMUST00000205993 Grik5 protein_coding Interval_140977 chr6 123696619 123697913 + 0 NA Intergenic Intergenic -5404 ENSMUSG00000091620.3 ENSMUSG00000091620 ENSMUST00000233395 Vmn2r23 protein_coding Interval_172167 chrX 8140608 8141501 + 0 NA exon (ENSMUSG00000031167.16, exon 7 of 7) protein_coding-exon (ENSMUSG00000031167.16, exon 7 of 7) 1864 ENSMUSG00000031167.16 ENSMUSG00000031167 ENSMUST00000145450 Rbm3 protein_coding Interval_58012 chr15 26075896 26076557 + 0 NA Intergenic Intergenic -13788 ENSMUSG00000115335.1 ENSMUSG00000115335 ENSMUST00000227975 Gm41279 lincRNA Interval_82367 chr18 73162224 73162507 + 0 NA Intergenic Intergenic -241275 ENSMUSG00000118316.1 ENSMUSG00000118316 ENSMUST00000236243 Gm31908 lincRNA Interval_169109 chr9 92577135 92577350 + 0 NA intron (ENSMUSG00000032374.14, intron 3 of 19) protein_coding-intron (ENSMUSG00000032374.14, intron 3 of 18) -24100 ENSMUSG00000032374.14 ENSMUSG00000032374 ENSMUST00000190075 Plod2 protein_coding Interval_42002 chr13 6312323 6313008 + 0 NA Intergenic Intergenic -17951 ENSMUSG00000114097.1 ENSMUSG00000114097 ENSMUST00000221255 Gm35615 lincRNA Interval_171252 chr9 115666595 115666879 + 0 NA exon (ENSMUSG00000111398.1, exon 1 of 1) processed_transcript-exon (ENSMUSG00000111398.1, exon 1 of 1) 823 ENSMUSG00000111398.1 ENSMUSG00000111398 ENSMUST00000215827 D330037F02Rik processed_transcript Interval_148314 chr7 80451574 80453287 + 0 NA Intergenic Intergenic 8394 ENSMUSG00000030528.12 ENSMUSG00000030528 ENSMUST00000205584 Blm protein_coding Interval_55984 chr14 103679593 103680777 + 0 NA intron (ENSMUSG00000055717.13, intron 1 of 5) protein_coding-intron (ENSMUSG00000055717.13, intron 2 of 6) 19257 ENSMUSG00000089707.1 ENSMUSG00000089707 ENSMUST00000160117 Slain1os antisense Interval_103763 chr3 52436707 52437548 + 0 NA Intergenic Intergenic 11719 ENSMUSG00000103454.1 ENSMUSG00000103454 ENSMUST00000194115 Gm38098 processed_pseudogene Interval_12368 chr1 192700140 192700559 + 0 NA intron (ENSMUSG00000037375.16, intron 7 of 11) protein_coding-intron (ENSMUSG00000037375.16, intron 7 of 11) -45222 ENSMUSG00000094131.1 ENSMUSG00000094131 ENSMUST00000082947 Gm22265 snRNA Interval_125067 chr5 64229714 64231017 + 0 NA promoter-TSS (ENSMUSG00000029174.18) protein_coding-promoter-TSS (ENSMUSG00000029174.18) -3565 ENSMUSG00000104947.1 ENSMUSG00000104947 ENSMUST00000199677 Gm43721 TEC Interval_88214 chr19 60729889 60731787 + 0 NA Intergenic Intergenic -25149 ENSMUSG00000072437.4 ENSMUSG00000072437 ENSMUST00000088237 Nanos1 protein_coding Interval_37386 chr12 66289491 66289848 + 0 NA Intergenic Intergenic -5268 ENSMUSG00000060499.7 ENSMUSG00000060499 ENSMUST00000081908 Rpl10l protein_coding Interval_80419 chr18 42049344 42050162 + 0 NA Intergenic Intergenic -50704 ENSMUSG00000073574.4 ENSMUSG00000073574 ENSMUST00000097591 Grxcr2 protein_coding Interval_8965 chr1 152792955 152794502 + 0 NA Intergenic Intergenic -14109 ENSMUSG00000026480.12 ENSMUSG00000026480 ENSMUST00000187235 Ncf2 protein_coding Interval_80469 chr18 42467261 42468171 + 0 NA Intergenic Intergenic -19372 ENSMUSG00000118058.1 ENSMUSG00000118058 ENSMUST00000237473 Gm3631 processed_pseudogene Interval_159068 chr8 89356974 89357191 + 0 NA Intergenic Intergenic -169522 ENSMUSG00000069962.3 ENSMUSG00000069962 ENSMUST00000093326 Gm5356 processed_pseudogene Interval_1737 chr1 33277146 33277330 + 0 NA Intergenic Intergenic -16438 ENSMUSG00000065223.1 ENSMUSG00000065223 ENSMUST00000083289 Gm25792 snRNA Interval_156908 chr8 61590015 61591790 + 0 NA intron (ENSMUSG00000058056.16, intron 10 of 21) protein_coding-intron (ENSMUSG00000058056.16, intron 10 of 19) -75002 ENSMUSG00000058056.16 ENSMUSG00000058056 ENSMUST00000123523 Palld protein_coding Interval_94243 chr2 86270554 86270824 + 0 NA Intergenic Intergenic -1864 ENSMUSG00000083969.1 ENSMUSG00000083969 ENSMUST00000119802 Olfr1050-ps1 unprocessed_pseudogene Interval_44196 chr13 41845806 41846591 + 0 NA intron (ENSMUSG00000099672.1, intron 1 of 1) protein_coding-intron (ENSMUSG00000058022.14, intron 1 of 6) 3184 ENSMUSG00000099672.1 ENSMUSG00000099672 ENSMUST00000190864 Gm28564 antisense Interval_91646 chr2 45208412 45209248 + 0 NA Intergenic Intergenic 51905 ENSMUSG00000100135.1 ENSMUSG00000100135 ENSMUST00000188811 Gm28643 lincRNA Interval_106371 chr3 95689637 95689896 + 0 NA Intergenic Intergenic -12615 ENSMUSG00000015850.11 ENSMUSG00000015850 ENSMUST00000148854 Adamtsl4 protein_coding Interval_66864 chr16 38183668 38183878 + 0 NA intron (ENSMUSG00000022812.14, intron 3 of 5) protein_coding-intron (ENSMUSG00000022812.14, intron 3 of 10) 23818 ENSMUSG00000098908.1 ENSMUSG00000098908 ENSMUST00000184976 Gm27931 snoRNA Interval_135782 chr6 47306273 47306462 + 0 NA Intergenic Intergenic 126722 ENSMUSG00000107853.1 ENSMUSG00000107853 ENSMUST00000203098 Gm18584 processed_pseudogene Interval_150199 chr7 107929197 107929686 + 0 NA Intergenic Intergenic -1005 ENSMUSG00000095212.4 ENSMUSG00000095212 ENSMUST00000084761 Olfr473 protein_coding Interval_64160 chr16 8776519 8777414 + 0 NA intron (ENSMUSG00000022710.17, intron 1 of 31) protein_coding-intron (ENSMUSG00000022710.17, intron 1 of 31) -10690 ENSMUSG00000084737.1 ENSMUSG00000084737 ENSMUST00000122788 Gm25805 snRNA Interval_26743 chr11 60160770 60161867 + 0 NA intron (ENSMUSG00000062115.15, intron 2 of 4) protein_coding-intron (ENSMUSG00000062115.15, intron 2 of 5) 21236 ENSMUSG00000062115.15 ENSMUSG00000062115 ENSMUST00000102688 Rai1 protein_coding Interval_51373 chr14 27070253 27071256 + 0 NA intron (ENSMUSG00000040717.6, intron 2 of 13) protein_coding-intron (ENSMUSG00000040717.6, intron 1 of 12) 3357 ENSMUSG00000040717.6 ENSMUSG00000040717 ENSMUST00000225829 Il17rd protein_coding Interval_72427 chr17 29746722 29747983 + 0 NA Intergenic Intergenic 30280 ENSMUSG00000117434.1 ENSMUSG00000117434 ENSMUST00000234637 1810014P07Rik bidirectional_promoter_lncRNA Interval_139571 chr6 101358935 101360134 + 0 NA intron (ENSMUSG00000035357.17, intron 2 of 3) protein_coding-intron (ENSMUSG00000035357.17, intron 2 of 9) -10704 ENSMUSG00000107720.1 ENSMUSG00000107720 ENSMUST00000204058 Gm43946 TEC Interval_146430 chr7 45841630 45841999 + 0 NA intron (ENSMUSG00000002771.12, intron 10 of 12) protein_coding-intron (ENSMUSG00000002771.12, intron 9 of 11) 7948 ENSMUSG00000110020.1 ENSMUSG00000110020 ENSMUST00000210177 Gm45441 antisense Interval_157963 chr8 77357132 77357368 + 0 NA intron (ENSMUSG00000037148.8, intron 15 of 21) protein_coding-intron (ENSMUSG00000037148.8, intron 15 of 22) 15266 ENSMUSG00000109873.1 ENSMUSG00000109873 ENSMUST00000209499 Gm45407 TEC Interval_64698 chr16 14272129 14272347 + 0 NA intron (ENSMUSG00000018830.10, intron 2 of 41) protein_coding-intron (ENSMUSG00000018830.10, intron 2 of 40) 19127 ENSMUSG00000018830.10 ENSMUSG00000018830 ENSMUST00000230643 Myh11 protein_coding Interval_73681 chr17 42777998 42778402 + 0 NA Intergenic Intergenic -36021 ENSMUSG00000057899.7 ENSMUSG00000057899 ENSMUST00000113614 Adgrf2 protein_coding Interval_63769 chr15 103313637 103315651 + 0 NA exon (ENSMUSG00000000552.10, exon 8 of 8) protein_coding-exon (ENSMUSG00000000552.10, exon 8 of 8) -4032 ENSMUSG00000063234.5 ENSMUSG00000063234 ENSMUST00000079824 Gpr84 protein_coding Interval_89432 chr2 20652866 20653626 + 0 NA intron (ENSMUSG00000036617.17, intron 4 of 5) protein_coding-intron (ENSMUSG00000036617.17, intron 3 of 18) 59988 ENSMUSG00000086418.1 ENSMUSG00000086418 ENSMUST00000137186 Gm13362 antisense Interval_90203 chr2 29003817 29004619 + 0 NA intron (ENSMUSG00000079502.8, intron 1 of 6) protein_coding-intron (ENSMUSG00000079502.8, intron 1 of 5) 35142 ENSMUSG00000079502.8 ENSMUSG00000079502 ENSMUST00000113843 Cfap77 protein_coding Interval_136058 chr6 50378105 50379036 + 0 NA intron (ENSMUSG00000029822.15, intron 1 of 5) protein_coding-intron (ENSMUSG00000029822.15, intron 2 of 21) -26613 ENSMUSG00000029822.15 ENSMUSG00000029822 ENSMUST00000154333 Osbpl3 protein_coding Interval_10416 chr1 170632364 170633020 + 0 NA Intergenic Intergenic 1771 ENSMUSG00000102193.1 ENSMUSG00000102193 ENSMUST00000194441 Gm7299 processed_pseudogene Interval_130447 chr5 127699970 127701397 + 0 NA intron (ENSMUSG00000049971.17, intron 11 of 11) protein_coding-intron (ENSMUSG00000049971.17, intron 11 of 11) 68421 ENSMUSG00000049971.17 ENSMUSG00000049971 ENSMUST00000134529 Glt1d1 protein_coding Interval_27274 chr11 65152412 65152754 + 0 NA exon (ENSMUSG00000020548.10, exon 4 of 4) protein_coding-exon (ENSMUSG00000020548.10, exon 4 of 4) 7308 ENSMUSG00000020548.10 ENSMUSG00000020548 ENSMUST00000108696 1700086D15Rik protein_coding Interval_13853 chr10 23915611 23916167 + 0 NA Intergenic Intergenic -4467 ENSMUSG00000056379.3 ENSMUSG00000056379 ENSMUST00000051532 Taar1 protein_coding Interval_96776 chr2 128125594 128128275 + 0 NA promoter-TSS (ENSMUSG00000027381.16) protein_coding-promoter-TSS (ENSMUSG00000027381.16) 896 ENSMUSG00000027381.16 ENSMUSG00000027381 ENSMUST00000132201 Bcl2l11 protein_coding Interval_50005 chr13 119640465 119640980 + 0 NA intron (ENSMUSG00000074715.3, intron 1 of 2) protein_coding-intron (ENSMUSG00000074715.3, intron 1 of 2) -8794 ENSMUSG00000074715.3 ENSMUSG00000074715 ENSMUST00000225880 Ccl28 protein_coding Interval_24000 chr11 29323311 29323521 + 0 NA Intergenic Intergenic 10906 ENSMUSG00000083298.1 ENSMUSG00000083298 ENSMUST00000119263 Gm12085 processed_pseudogene Interval_89561 chr2 22773770 22774856 + 0 NA promoter-TSS (ENSMUSG00000026786.14) protein_coding-promoter-TSS (ENSMUSG00000026786.14) -77 ENSMUSG00000026786.14 ENSMUSG00000026786 ENSMUST00000132993 Apbb1ip protein_coding Interval_9558 chr1 159395837 159397037 + 0 NA Intergenic Intergenic 18033 ENSMUSG00000103289.1 ENSMUSG00000103289 ENSMUST00000194705 Gm31256 processed_pseudogene Interval_162056 chr8 124774521 124776191 + 0 NA Intergenic Intergenic -6377 ENSMUSG00000110550.1 ENSMUSG00000110550 ENSMUST00000212752 Gm45856 processed_pseudogene Interval_65788 chr16 28858336 28859162 + 0 NA intron (ENSMUSG00000051065.9, intron 1 of 1) protein_coding-intron (ENSMUSG00000051065.9, intron 1 of 1) -22382 ENSMUSG00000051065.9 ENSMUSG00000051065 ENSMUST00000232571 Mb21d2 protein_coding Interval_117280 chr4 121239540 121241797 + 0 NA Intergenic Intergenic -13195 ENSMUSG00000080706.1 ENSMUSG00000080706 ENSMUST00000120885 Gm12890 processed_pseudogene Interval_58203 chr15 30718996 30719760 + 0 NA intron (ENSMUSG00000022240.10, intron 1 of 2) protein_coding-intron (ENSMUSG00000022240.10, intron 9 of 22) -92757 ENSMUSG00000115337.1 ENSMUSG00000115337 ENSMUST00000228499 4930570B17Rik antisense Interval_37409 chr12 67651555 67652174 + 0 NA intron (ENSMUSG00000114010.1, intron 1 of 3) lincRNA-intron (ENSMUSG00000114010.1, intron 1 of 3) 479 ENSMUSG00000114010.1 ENSMUSG00000114010 ENSMUST00000222891 Gm47432 lincRNA Interval_78875 chr18 21090788 21091132 + 0 NA intron (ENSMUSG00000024313.8, intron 9 of 14) protein_coding-intron (ENSMUSG00000024313.8, intron 9 of 14) -13851 ENSMUSG00000062962.5 ENSMUSG00000062962 ENSMUST00000084199 Gm6378 processed_pseudogene Interval_169706 chr9 100533724 100533998 + 0 NA intron (ENSMUSG00000032475.15, intron 1 of 2) protein_coding-intron (ENSMUSG00000032475.15, intron 1 of 3) -2790 ENSMUSG00000100176.1 ENSMUSG00000100176 ENSMUST00000189857 Gm28586 sense_intronic Interval_103796 chr3 53028973 53029489 + 0 NA Intergenic Intergenic -12013 ENSMUSG00000027742.13 ENSMUSG00000027742 ENSMUST00000193043 Cog6 protein_coding Interval_8657 chr1 146357070 146357942 + 0 NA Intergenic Intergenic -62930 ENSMUSG00000090323.2 ENSMUSG00000090323 ENSMUST00000163646 Gm5263 processed_pseudogene Interval_35670 chr12 27288293 27288565 + 0 NA Intergenic Intergenic -21862 ENSMUSG00000114083.1 ENSMUSG00000114083 ENSMUST00000221503 Gm47860 transcribed_processed_pseudogene Interval_44198 chr13 41892604 41892881 + 0 NA intron (ENSMUSG00000113856.1, intron 3 of 6) processed_transcript-intron (ENSMUSG00000113856.1, intron 3 of 3) -8909 ENSMUSG00000089035.1 ENSMUSG00000089035 ENSMUST00000158410 Gm22157 snRNA Interval_100791 chr2 172546806 172547664 + 0 NA Intergenic Intergenic -3756 ENSMUSG00000028640.11 ENSMUSG00000028640 ENSMUST00000142633 Tfap2c protein_coding Interval_142089 chr6 137096009 137096405 + 0 NA intron (ENSMUSG00000030222.13, intron 2 of 4) protein_coding-intron (ENSMUSG00000030222.13, intron 2 of 4) 43856 ENSMUSG00000030222.13 ENSMUSG00000030222 ENSMUST00000149100 Rerg protein_coding Interval_1612 chr1 29921559 29921791 + 0 NA Intergenic Intergenic -8419 ENSMUSG00000101726.1 ENSMUSG00000101726 ENSMUST00000190177 Gm7858 processed_pseudogene Interval_148011 chr7 77929983 77930454 + 0 NA Intergenic Intergenic -19898 ENSMUSG00000064940.1 ENSMUSG00000064940 ENSMUST00000083006 Gm23239 snRNA Interval_145011 chr7 29411103 29411648 + 0 NA intron (ENSMUSG00000030583.16, intron 3 of 22) protein_coding-intron (ENSMUSG00000030583.16, intron 3 of 22) -33770 ENSMUSG00000030583.16 ENSMUSG00000030583 ENSMUST00000183085 Sipa1l3 protein_coding Interval_113952 chr4 61718415 61719779 + 0 NA Intergenic Intergenic 20256 ENSMUSG00000083304.1 ENSMUSG00000083304 ENSMUST00000121741 Mup-ps15 unprocessed_pseudogene Interval_120937 chr4 151764020 151764586 + 0 NA intron (ENSMUSG00000014592.21, intron 2 of 7) protein_coding-intron (ENSMUSG00000014592.21, intron 3 of 23) 97401 ENSMUSG00000014592.21 ENSMUSG00000014592 ENSMUST00000135780 Camta1 protein_coding Interval_48944 chr13 105272744 105272952 + 0 NA intron (ENSMUSG00000021720.11, intron 1 of 3) protein_coding-intron (ENSMUSG00000021720.11, intron 1 of 7) 21554 ENSMUSG00000021720.11 ENSMUSG00000021720 ENSMUST00000224749 Rnf180 protein_coding Interval_54995 chr14 76734991 76736163 + 0 NA Intergenic Intergenic -24554 ENSMUSG00000115709.1 ENSMUSG00000115709 ENSMUST00000228541 4930431P22Rik lincRNA Interval_174765 chrX 166206345 166207262 + 0 NA TTS (ENSMUSG00000084080.1) processed_pseudogene-TTS (ENSMUSG00000084080.1) 949 ENSMUSG00000084080.1 ENSMUSG00000084080 ENSMUST00000121844 Gm15227 processed_pseudogene Interval_3635 chr1 60152648 60152940 + 0 NA exon (ENSMUSG00000026017.13, exon 15 of 15) protein_coding-exon (ENSMUSG00000026017.13, exon 15 of 15) 35539 ENSMUSG00000082609.1 ENSMUSG00000082609 ENSMUST00000118718 Gm15464 processed_pseudogene Interval_90077 chr2 27762469 27762877 + 0 NA exon (ENSMUSG00000015846.15, exon 10 of 10) protein_coding-exon (ENSMUSG00000015846.15, exon 10 of 10) 37454 ENSMUSG00000015846.15 ENSMUSG00000015846 ENSMUST00000148756 Rxra protein_coding Interval_15016 chr10 41934725 41935461 + 0 NA intron (ENSMUSG00000071324.11, intron 11 of 16) protein_coding-intron (ENSMUSG00000071324.11, intron 12 of 17) 36720 ENSMUSG00000038332.13 ENSMUSG00000038332 ENSMUST00000214835 Sesn1 protein_coding Interval_163350 chr9 21007943 21009024 + 0 NA TTS (ENSMUSG00000003299.10) protein_coding-TTS (ENSMUSG00000003299.10) 5568 ENSMUSG00000003299.10 ENSMUSG00000003299 ENSMUST00000216466 Mrpl4 protein_coding Interval_66492 chr16 34289764 34290066 + 0 NA intron (ENSMUSG00000061751.16, intron 9 of 48) protein_coding-intron (ENSMUSG00000061751.16, intron 10 of 59) -193887 ENSMUSG00000061751.16 ENSMUSG00000061751 ENSMUST00000132569 Kalrn protein_coding Interval_92800 chr2 65514146 65515268 + 0 NA exon (ENSMUSG00000057182.15, exon 11 of 27) protein_coding-exon (ENSMUSG00000057182.15, exon 11 of 27) 5442 ENSMUSG00000086701.1 ENSMUSG00000086701 ENSMUST00000145994 Gm13595 antisense Interval_80603 chr18 44555896 44556080 + 0 NA intron (ENSMUSG00000071856.10, intron 3 of 18) protein_coding-intron (ENSMUSG00000071856.10, intron 3 of 18) -106115 ENSMUSG00000097610.2 ENSMUSG00000097610 ENSMUST00000202771 A930012L18Rik antisense Interval_34308 chr12 3287772 3288034 + 0 NA intron (ENSMUSG00000020671.9, intron 1 of 5) protein_coding-intron (ENSMUSG00000020671.9, intron 1 of 5) 22066 ENSMUSG00000020671.9 ENSMUSG00000020671 ENSMUST00000021001 Rab10 protein_coding Interval_38387 chr12 78470960 78471143 + 0 NA intron (ENSMUSG00000047454.12, intron 5 of 22) protein_coding-intron (ENSMUSG00000047454.12, intron 5 of 23) 29456 ENSMUSG00000112391.1 ENSMUSG00000112391 ENSMUST00000218041 Gm48230 TEC Interval_107851 chr3 116251264 116253369 + 0 NA TTS (ENSMUSG00000068696.6) protein_coding-TTS (ENSMUSG00000068696.6) 1147 ENSMUSG00000068696.6 ENSMUSG00000068696 ENSMUST00000199128 Gpr88 protein_coding Interval_79900 chr18 35796287 35796544 + 0 NA intron (ENSMUSG00000091896.8, intron 2 of 2) protein_coding-intron (ENSMUSG00000091896.8, intron 2 of 7) -3427 ENSMUSG00000117841.1 ENSMUSG00000117841 ENSMUST00000235919 Gm50371 processed_transcript Interval_16571 chr10 64079753 64079940 + 0 NA intron (ENSMUSG00000042846.8, intron 1 of 1) protein_coding-intron (ENSMUSG00000060843.11, intron 6 of 16) 10401 ENSMUSG00000042846.8 ENSMUSG00000042846 ENSMUST00000133588 Lrrtm3 protein_coding Interval_77505 chr17 90420635 90420847 + 0 NA intron (ENSMUSG00000024109.18, intron 3 of 3) protein_coding-intron (ENSMUSG00000024109.18, intron 15 of 20) -34148 ENSMUSG00000073367.5 ENSMUSG00000073367 ENSMUST00000097270 Gm10493 processed_pseudogene Interval_60616 chr15 75711765 75712628 + 0 NA promoter-TSS (ENSMUSG00000022580.13) protein_coding-promoter-TSS (ENSMUSG00000022580.13) 1457 ENSMUSG00000022580.13 ENSMUSG00000022580 ENSMUST00000229670 Rhpn1 protein_coding Interval_128313 chr5 112485115 112485771 + 0 NA intron (ENSMUSG00000058153.15, intron 1 of 14) protein_coding-intron (ENSMUSG00000058153.15, intron 1 of 16) 36017 ENSMUSG00000072722.2 ENSMUSG00000072722 ENSMUST00000100882 Gm6588 protein_coding Interval_104999 chr3 79608393 79608587 + 0 NA intron (ENSMUSG00000027809.14, intron 10 of 12) protein_coding-intron (ENSMUSG00000027809.14, intron 10 of 12) 3336 ENSMUSG00000102370.1 ENSMUSG00000102370 ENSMUST00000195767 Gm37973 TEC Interval_145277 chr7 31105322 31105656 + 0 NA intron (ENSMUSG00000001249.14, intron 4 of 12) protein_coding-intron (ENSMUSG00000001249.14, intron 4 of 12) -2975 ENSMUSG00000001249.14 ENSMUSG00000001249 ENSMUST00000168623 Hpn protein_coding Interval_26106 chr11 54311964 54312668 + 0 NA intron (ENSMUSG00000020333.17, intron 1 of 20) protein_coding-intron (ENSMUSG00000020333.17, intron 1 of 19) -7836 ENSMUSG00000020333.17 ENSMUSG00000020333 ENSMUST00000139484 Acsl6 protein_coding Interval_33824 chr11 118764645 118765354 + 0 NA intron (ENSMUSG00000025576.17, intron 2 of 14) protein_coding-intron (ENSMUSG00000025576.17, intron 2 of 14) -26373 ENSMUSG00000085059.1 ENSMUSG00000085059 ENSMUST00000146016 Gm11750 lincRNA Interval_104957 chr3 79272651 79272919 + 0 NA intron (ENSMUSG00000062232.14, intron 1 of 29) protein_coding-intron (ENSMUSG00000062232.14, intron 1 of 29) 13732 ENSMUSG00000062232.14 ENSMUSG00000062232 ENSMUST00000136126 Rapgef2 protein_coding Interval_17798 chr10 80147758 80150243 + 0 NA promoter-TSS (ENSMUSG00000035621.13) protein_coding-promoter-TSS (ENSMUSG00000035621.13) -1457 ENSMUSG00000035621.13 ENSMUSG00000035621 ENSMUST00000144526 Midn protein_coding Interval_127300 chr5 102266716 102266909 + 0 NA Intergenic Intergenic 104521 ENSMUSG00000106189.1 ENSMUSG00000106189 ENSMUST00000196547 Gm42933 processed_pseudogene Interval_123583 chr5 33628886 33630337 + 0 NA promoter-TSS (ENSMUSG00000037339.17) protein_coding-promoter-TSS (ENSMUSG00000037339.17) -314 ENSMUSG00000097271.1 ENSMUSG00000097271 ENSMUST00000181102 Gm9903 protein_coding Interval_75645 chr17 69727926 69728136 + 0 NA Intergenic Intergenic 47981 ENSMUSG00000117124.1 ENSMUSG00000117124 ENSMUST00000233218 Gm49895 lincRNA Interval_78126 chr18 8859263 8860937 + 0 NA Intergenic Intergenic -68135 ENSMUSG00000103172.1 ENSMUSG00000103172 ENSMUST00000195097 Gm37148 TEC Interval_51700 chr14 31494570 31495767 + 0 NA promoter-TSS (ENSMUSG00000021891.8) protein_coding-promoter-TSS (ENSMUSG00000021891.8) -28 ENSMUSG00000021890.6 ENSMUSG00000021890 ENSMUST00000227551 Eaf1 protein_coding Interval_6748 chr1 119160235 119160832 + 0 NA Intergenic Intergenic 2947 ENSMUSG00000096939.1 ENSMUSG00000096939 ENSMUST00000181691 Gm8321 processed_pseudogene Interval_22693 chr11 13140764 13141258 + 0 NA Intergenic Intergenic 143345 ENSMUSG00000084055.1 ENSMUSG00000084055 ENSMUST00000117869 Gm12004 processed_pseudogene Interval_138053 chr6 84736734 84738045 + 0 NA intron (ENSMUSG00000033769.16, intron 20 of 21) protein_coding-intron (ENSMUSG00000033769.16, intron 20 of 21) -74851 ENSMUSG00000098142.1 ENSMUSG00000098142 ENSMUST00000183053 Gm7507 processed_pseudogene Interval_122254 chr5 20701588 20703172 + 0 NA TTS (ENSMUSG00000040003.18) protein_coding-TTS (ENSMUSG00000040003.18) 103 ENSMUSG00000073174.6 ENSMUSG00000073174 ENSMUST00000189302 Gm29254 3prime_overlapping_ncRNA Interval_35725 chr12 28661801 28662156 + 0 NA Intergenic Intergenic 12354 ENSMUSG00000020630.9 ENSMUSG00000020630 ENSMUST00000221496 Rnaseh1 protein_coding Interval_78282 chr18 11546431 11546884 + 0 NA Intergenic Intergenic -78258 ENSMUSG00000117535.1 ENSMUSG00000117535 ENSMUST00000234170 Gm50067 processed_pseudogene Interval_27399 chr11 67350327 67350619 + 0 NA exon (ENSMUSG00000060180.12, exon 20 of 39) protein_coding-exon (ENSMUSG00000060180.12, exon 20 of 39) -13617 ENSMUSG00000084567.1 ENSMUSG00000084567 ENSMUST00000122618 Gm26476 misc_RNA Interval_123170 chr5 30288899 30289502 + 0 NA intron (ENSMUSG00000073102.7, intron 1 of 16) protein_coding-intron (ENSMUSG00000073102.7, intron 1 of 16) -48752 ENSMUSG00000085099.1 ENSMUSG00000085099 ENSMUST00000137940 Gm16288 processed_pseudogene Interval_34174 chr11 121099476 121100046 + 0 NA Intergenic Intergenic -2554 ENSMUSG00000084853.1 ENSMUSG00000084853 ENSMUST00000139327 Gm11791 lincRNA Interval_147841 chr7 74068645 74068912 + 0 NA Intergenic Intergenic -25040 ENSMUSG00000108725.1 ENSMUSG00000108725 ENSMUST00000205302 Gm45004 lincRNA Interval_98313 chr2 150947532 150948961 + 0 NA intron (ENSMUSG00000068115.13, intron 1 of 5) protein_coding-intron (ENSMUSG00000068115.13, intron 17 of 23) -1437 ENSMUSG00000084264.1 ENSMUSG00000084264 ENSMUST00000117833 Gm14142 processed_pseudogene Interval_148634 chr7 83631458 83632648 + 0 NA promoter-TSS (ENSMUSG00000046027.17) protein_coding-promoter-TSS (ENSMUSG00000046027.17) 37 ENSMUSG00000046027.17 ENSMUSG00000046027 ENSMUST00000130723 Stard5 protein_coding Interval_145174 chr7 30456417 30457984 + 0 NA promoter-TSS (ENSMUSG00000036915.17) protein_coding-promoter-TSS (ENSMUSG00000036915.17) -6336 ENSMUSG00000036915.17 ENSMUSG00000036915 ENSMUST00000117923 Kirrel2 protein_coding Interval_109535 chr3 144198509 144199077 + 0 NA exon (ENSMUSG00000104969.1, exon 1 of 1) sense_intronic-exon (ENSMUSG00000104969.1, exon 1 of 1) 469 ENSMUSG00000104969.1 ENSMUSG00000104969 ENSMUST00000198564 Gm43445 sense_intronic Interval_77405 chr17 88494355 88494994 + 0 NA Intergenic Intergenic -38353 ENSMUSG00000103075.1 ENSMUSG00000103075 ENSMUST00000195386 Gm38109 TEC Interval_150436 chr7 110613812 110616022 + 0 NA promoter-TSS (ENSMUSG00000038371.15) protein_coding-promoter-TSS (ENSMUSG00000038371.15) -13111 ENSMUSG00000030790.15 ENSMUSG00000030790 ENSMUST00000185766 Adm protein_coding Interval_89980 chr2 27027554 27028503 + 0 NA promoter-TSS (ENSMUSG00000036067.12) protein_coding-promoter-TSS (ENSMUSG00000036067.12) -37 ENSMUSG00000036067.12 ENSMUSG00000036067 ENSMUST00000153388 Slc2a6 protein_coding Interval_40287 chr12 103182948 103183541 + 0 NA intron (ENSMUSG00000021198.16, intron 51 of 51) protein_coding-intron (ENSMUSG00000021198.16, intron 46 of 46) 55055 ENSMUSG00000098628.1 ENSMUSG00000098628 ENSMUST00000183635 Gm27976 misc_RNA Interval_65086 chr16 18940989 18941898 + 0 NA promoter-TSS (ENSMUSG00000022702.16) protein_coding-promoter-TSS (ENSMUSG00000022702.16) -103 ENSMUSG00000022702.16 ENSMUSG00000022702 ENSMUST00000232419 Hira protein_coding Interval_90170 chr2 28713493 28714183 + 0 NA intron (ENSMUSG00000026807.8, intron 5 of 7) protein_coding-intron (ENSMUSG00000026807.8, intron 4 of 12) -14164 ENSMUSG00000026809.15 ENSMUSG00000026809 ENSMUST00000145014 Spaca9 protein_coding Interval_137922 chr6 83385678 83385999 + 0 NA intron (ENSMUSG00000034832.15, intron 5 of 11) protein_coding-intron (ENSMUSG00000034832.15, intron 4 of 10) 15264 ENSMUSG00000099045.1 ENSMUSG00000099045 ENSMUST00000184003 Mir6374 miRNA Interval_9693 chr1 161082508 161082723 + 0 NA intron (ENSMUSG00000026708.16, intron 4 of 4) protein_coding-intron (ENSMUSG00000026708.16, intron 3 of 3) 11599 ENSMUSG00000026708.16 ENSMUSG00000026708 ENSMUST00000155808 Cenpl protein_coding Interval_48190 chr13 97081775 97083228 + 0 NA intron (ENSMUSG00000041817.14, intron 1 of 12) protein_coding-intron (ENSMUSG00000041817.14, intron 1 of 12) 15215 ENSMUSG00000041817.14 ENSMUSG00000041817 ENSMUST00000042517 Fam169a protein_coding Interval_17734 chr10 79806887 79807277 + 0 NA exon (ENSMUSG00000035863.14, exon 3 of 9) protein_coding-exon (ENSMUSG00000035863.14, exon 3 of 9) -7588 ENSMUSG00000035863.14 ENSMUSG00000035863 ENSMUST00000220365 Palm protein_coding Interval_88738 chr2 10098760 10099026 + 0 NA intron (ENSMUSG00000037254.18, intron 16 of 20) protein_coding-intron (ENSMUSG00000037254.18, intron 16 of 20) 8596 ENSMUSG00000037262.7 ENSMUSG00000037262 ENSMUST00000142773 Kin protein_coding Interval_157387 chr8 70050435 70050891 + 0 NA intron (ENSMUSG00000011306.7, intron 2 of 3) protein_coding-intron (ENSMUSG00000011306.7, intron 2 of 13) 7614 ENSMUSG00000011306.7 ENSMUSG00000011306 ENSMUST00000213035 Sugp1 protein_coding Interval_57226 chr15 7983973 7984795 + 0 NA intron (ENSMUSG00000039828.7, intron 9 of 17) protein_coding-intron (ENSMUSG00000039828.7, intron 9 of 17) 9056 ENSMUSG00000098281.1 ENSMUSG00000098281 ENSMUST00000184975 Gm27529 miRNA Interval_119964 chr4 141133831 141134150 + 0 NA intron (ENSMUSG00000040842.17, intron 1 of 3) protein_coding-intron (ENSMUSG00000040842.17, intron 1 of 2) 5737 ENSMUSG00000040842.17 ENSMUSG00000040842 ENSMUST00000128444 Szrd1 protein_coding Interval_25673 chr11 50688708 50689557 + 0 NA intron (ENSMUSG00000036545.9, intron 3 of 20) protein_coding-intron (ENSMUSG00000036545.9, intron 3 of 21) 29783 ENSMUSG00000087080.1 ENSMUSG00000087080 ENSMUST00000137567 Gm12199 antisense Interval_138562 chr6 89334069 89334711 + 0 NA exon (ENSMUSG00000030084.11, exon 14 of 32) protein_coding-exon (ENSMUSG00000030084.11, exon 14 of 32) -10750 ENSMUSG00000107570.1 ENSMUSG00000107570 ENSMUST00000204568 Gm44207 TEC Interval_29820 chr11 87032072 87032285 + 0 NA Intergenic Intergenic -34915 ENSMUSG00000088816.1 ENSMUSG00000088816 ENSMUST00000158191 Gm22387 scaRNA Interval_66090 chr16 31545476 31547272 + 0 NA Intergenic Intergenic 37987 ENSMUSG00000116762.1 ENSMUSG00000116762 ENSMUST00000231805 Gm46560 lincRNA Interval_108935 chr3 133491408 133491948 + 0 NA intron (ENSMUSG00000040943.12, intron 2 of 2) protein_coding-intron (ENSMUSG00000040943.12, intron 2 of 10) -10996 ENSMUSG00000040943.12 ENSMUSG00000040943 ENSMUST00000195913 Tet2 protein_coding Interval_31063 chr11 97949131 97950694 + 0 NA intron (ENSMUSG00000017417.14, intron 6 of 7) protein_coding-intron (ENSMUSG00000017417.14, intron 7 of 13) -8172 ENSMUSG00000093013.1 ENSMUSG00000093013 ENSMUST00000175272 Gm22461 miRNA Interval_8036 chr1 135343434 135344324 + 0 NA intron (ENSMUSG00000048096.7, intron 1 of 2) protein_coding-intron (ENSMUSG00000048096.7, intron 1 of 2) 9943 ENSMUSG00000087859.1 ENSMUSG00000087859 ENSMUST00000157234 Gm22796 snRNA Interval_26741 chr11 60126955 60127287 + 0 NA intron (ENSMUSG00000062115.15, intron 1 of 4) protein_coding-intron (ENSMUSG00000062115.15, intron 1 of 5) -11891 ENSMUSG00000051008.5 ENSMUSG00000051008 ENSMUST00000130746 4930412M03Rik lincRNA Interval_87878 chr19 56799812 56800037 + 0 NA TTS (ENSMUSG00000035173.14) protein_coding-TTS (ENSMUSG00000035173.14) 1062 ENSMUSG00000035173.14 ENSMUSG00000035173 ENSMUST00000140184 Ccdc186 protein_coding Interval_80591 chr18 44470330 44470899 + 0 NA intron (ENSMUSG00000071856.10, intron 9 of 16) protein_coding-intron (ENSMUSG00000071856.10, intron 11 of 18) 90112 ENSMUSG00000024472.9 ENSMUSG00000024472 ENSMUST00000025350 Dcp2 protein_coding Interval_116187 chr4 108506899 108507249 + 0 NA intron (ENSMUSG00000034610.14, intron 8 of 15) protein_coding-intron (ENSMUSG00000034610.14, intron 10 of 30) -6707 ENSMUSG00000085093.1 ENSMUSG00000085093 ENSMUST00000142835 Gm12737 sense_intronic Interval_158897 chr8 87804258 87805120 + 0 NA promoter-TSS (ENSMUSG00000045333.15) protein_coding-promoter-TSS (ENSMUSG00000045333.15) 149173 ENSMUSG00000045333.15 ENSMUSG00000045333 ENSMUST00000173092 Zfp423 protein_coding Interval_82910 chr18 78972868 78973764 + 0 NA intron (ENSMUSG00000024548.11, intron 2 of 5) protein_coding-intron (ENSMUSG00000024548.11, intron 2 of 5) 136075 ENSMUSG00000024548.11 ENSMUSG00000024548 ENSMUST00000025430 Setbp1 protein_coding Interval_163664 chr9 23581142 23581506 + 0 NA Intergenic Intergenic -195168 ENSMUSG00000111041.1 ENSMUSG00000111041 ENSMUST00000215669 Gm3011 processed_pseudogene Interval_37742 chr12 71569703 71569951 + 0 NA Intergenic Intergenic -8138 ENSMUSG00000114028.1 ENSMUSG00000114028 ENSMUST00000222033 9630002D21Rik lincRNA Interval_118189 chr4 129432483 129432952 + 0 NA promoter-TSS (ENSMUSG00000048485.12) protein_coding-promoter-TSS (ENSMUSG00000048485.12) -188 ENSMUSG00000048485.12 ENSMUSG00000048485 ENSMUST00000124364 Zbtb8b protein_coding Interval_11346 chr1 181110507 181111047 + 0 NA intron (ENSMUSG00000026516.8, intron 15 of 22) protein_coding-intron (ENSMUSG00000026516.8, intron 15 of 22) -15252 ENSMUSG00000026516.8 ENSMUSG00000026516 ENSMUST00000193758 Nvl protein_coding Interval_83962 chr19 5823119 5823728 + 0 NA Intergenic Intergenic 1284 ENSMUSG00000098865.1 ENSMUSG00000098865 ENSMUST00000184512 Gm27702 sRNA Interval_72241 chr17 28768919 28770428 + 0 NA intron (ENSMUSG00000004864.13, intron 1 of 9) protein_coding-intron (ENSMUSG00000004864.13, intron 1 of 9) 376 ENSMUSG00000004864.13 ENSMUSG00000004864 ENSMUST00000004986 Mapk13 protein_coding Interval_13497 chr10 18743314 18744129 + 0 NA promoter-TSS (ENSMUSG00000019852.7) protein_coding-promoter-TSS (ENSMUSG00000019852.7) 228 ENSMUSG00000019852.7 ENSMUSG00000019852 ENSMUST00000019999 Arfgef3 protein_coding Interval_97452 chr2 136691731 136691962 + 0 NA Intergenic Intergenic 11885 ENSMUSG00000103066.1 ENSMUSG00000103066 ENSMUST00000193814 Gm36967 TEC Interval_57706 chr15 16260561 16260937 + 0 NA Intergenic Intergenic -52796 ENSMUSG00000115434.1 ENSMUSG00000115434 ENSMUST00000227564 Gm6479 processed_pseudogene Interval_42558 chr13 15462675 15464807 + 0 NA promoter-TSS (ENSMUSG00000021318.15) protein_coding-promoter-TSS (ENSMUSG00000021318.15) -5 ENSMUSG00000097806.3 ENSMUSG00000097806 ENSMUST00000193256 Gm6556 processed_transcript Interval_131817 chr5 140073297 140074299 + 0 NA promoter-TSS (ENSMUSG00000085673.1) antisense-promoter-TSS (ENSMUSG00000085673.1) -307 ENSMUSG00000085673.1 ENSMUSG00000085673 ENSMUST00000142625 Gm16122 antisense Interval_87722 chr19 55430737 55430939 + 0 NA intron (ENSMUSG00000024983.10, intron 5 of 7) protein_coding-intron (ENSMUSG00000024983.10, intron 5 of 7) 114511 ENSMUSG00000024983.10 ENSMUSG00000024983 ENSMUST00000224396 Vti1a protein_coding Interval_76581 chr17 81669204 81670692 + 0 NA intron (ENSMUSG00000054640.15, intron 1 of 11) protein_coding-intron (ENSMUSG00000054640.15, intron 1 of 10) 68429 ENSMUSG00000054640.15 ENSMUSG00000054640 ENSMUST00000234923 Slc8a1 protein_coding Interval_34487 chr12 4577109 4577881 + 0 NA promoter-TSS (ENSMUSG00000112505.1) lincRNA-promoter-TSS (ENSMUSG00000112505.1) -739 ENSMUSG00000112505.1 ENSMUSG00000112505 ENSMUST00000218537 Gm48610 lincRNA Interval_69494 chr16 93856963 93858529 + 0 NA intron (ENSMUSG00000039456.10, intron 9 of 13) protein_coding-intron (ENSMUSG00000039456.10, intron 9 of 16) -2767 ENSMUSG00000039456.10 ENSMUSG00000039456 ENSMUST00000232639 Morc3 protein_coding Interval_95203 chr2 104763625 104764113 + 0 NA intron (ENSMUSG00000074994.6, intron 10 of 12) protein_coding-intron (ENSMUSG00000074994.6, intron 9 of 11) -40714 ENSMUSG00000027173.7 ENSMUSG00000027173 ENSMUST00000144133 Depdc7 protein_coding Interval_171931 chr9 122687141 122687371 + 0 NA exon (ENSMUSG00000111577.1, exon 2 of 2) lincRNA-exon (ENSMUSG00000111577.1, exon 2 of 2) -2373 ENSMUSG00000111068.1 ENSMUSG00000111068 ENSMUST00000215101 Gm35501 lincRNA Interval_31102 chr11 98143207 98143431 + 0 NA intron (ENSMUSG00000020883.18, intron 1 of 7) protein_coding-intron (ENSMUSG00000020883.18, intron 1 of 14) 7084 ENSMUSG00000020883.18 ENSMUSG00000020883 ENSMUST00000148473 Fbxl20 protein_coding Interval_33812 chr11 118696556 118697279 + 0 NA intron (ENSMUSG00000025576.17, intron 2 of 14) protein_coding-intron (ENSMUSG00000025576.17, intron 2 of 14) -94455 ENSMUSG00000085059.1 ENSMUSG00000085059 ENSMUST00000146016 Gm11750 lincRNA Interval_164485 chr9 37429399 37429694 + 0 NA exon (ENSMUSG00000032128.15, exon 1 of 27) protein_coding-exon (ENSMUSG00000032128.15, exon 1 of 27) -6943 ENSMUSG00000032128.15 ENSMUSG00000032128 ENSMUST00000167216 Robo3 protein_coding Interval_10394 chr1 170378862 170379187 + 0 NA intron (ENSMUSG00000038473.14, intron 3 of 7) protein_coding-intron (ENSMUSG00000038473.14, intron 3 of 3) -58244 ENSMUSG00000038473.14 ENSMUSG00000038473 ENSMUST00000159665 Nos1ap protein_coding Interval_145328 chr7 33689036 33690517 + 0 NA Intergenic Intergenic -7494 ENSMUSG00000094079.1 ENSMUSG00000094079 ENSMUST00000179178 Rpl23a-ps12 processed_pseudogene Interval_122497 chr5 23450223 23450775 + 0 NA intron (ENSMUSG00000029004.15, intron 2 of 12) protein_coding-intron (ENSMUSG00000029004.15, intron 2 of 25) -17190 ENSMUSG00000073147.3 ENSMUSG00000073147 ENSMUST00000189045 5031425E22Rik lincRNA Interval_88504 chr2 5668896 5670841 + 0 NA intron (ENSMUSG00000039145.16, intron 1 of 1) protein_coding-intron (ENSMUSG00000039145.16, intron 1 of 10) 44635 ENSMUSG00000039145.16 ENSMUSG00000039145 ENSMUST00000155927 Camk1d protein_coding Interval_97434 chr2 136158900 136159118 + 0 NA intron (ENSMUSG00000039913.12, intron 3 of 9) protein_coding-intron (ENSMUSG00000039913.12, intron 4 of 10) 22003 ENSMUSG00000085383.1 ENSMUSG00000085383 ENSMUST00000137802 Gm14218 antisense Interval_29664 chr11 85889884 85891574 + 0 NA intron (ENSMUSG00000000094.12, intron 2 of 8) protein_coding-intron (ENSMUSG00000000094.12, intron 1 of 7) 4307 ENSMUSG00000000094.12 ENSMUSG00000000094 ENSMUST00000108045 Tbx4 protein_coding Interval_173302 chrX 77602687 77602967 + 0 NA intron (ENSMUSG00000025246.13, intron 2 of 12) protein_coding-intron (ENSMUSG00000025246.13, intron 1 of 15) 23340 ENSMUSG00000088278.1 ENSMUSG00000088278 ENSMUST00000157653 Gm23121 snRNA Interval_78575 chr18 14850417 14851470 + 0 NA intron (ENSMUSG00000054321.7, intron 13 of 14) protein_coding-intron (ENSMUSG00000054321.7, intron 13 of 14) 20275 ENSMUSG00000117530.1 ENSMUSG00000117530 ENSMUST00000234669 Gm21055 processed_pseudogene Interval_48837 chr13 103913942 103914590 + 0 NA intron (ENSMUSG00000021709.14, intron 1 of 26) protein_coding-intron (ENSMUSG00000021709.14, intron 1 of 25) 6029 ENSMUSG00000021709.14 ENSMUSG00000021709 ENSMUST00000189323 Erbin protein_coding Interval_50628 chr14 16813676 16813920 + 0 NA intron (ENSMUSG00000017491.9, intron 1 of 3) protein_coding-intron (ENSMUSG00000017491.9, intron 1 of 3) -132861 ENSMUSG00000114890.1 ENSMUSG00000114890 ENSMUST00000223705 Tpi-rs9 processed_pseudogene Interval_16284 chr10 61956161 61956957 + 0 NA intron (ENSMUSG00000058806.15, intron 2 of 40) protein_coding-intron (ENSMUSG00000058806.15, intron 2 of 33) -3065 ENSMUSG00000112574.1 ENSMUSG00000112574 ENSMUST00000218711 Gm5750 processed_pseudogene Interval_37021 chr12 56504434 56504645 + 0 NA exon (ENSMUSG00000112343.1, exon 1 of 5) processed_transcript-exon (ENSMUSG00000112343.1, exon 1 of 5) -3711 ENSMUSG00000112468.1 ENSMUSG00000112468 ENSMUST00000219957 Gm47720 TEC Interval_119868 chr4 140599160 140600772 + 0 NA intron (ENSMUSG00000040964.16, intron 3 of 4) protein_coding-intron (ENSMUSG00000040964.16, intron 4 of 27) 17099 ENSMUSG00000040964.16 ENSMUSG00000040964 ENSMUST00000154979 Arhgef10l protein_coding Interval_84636 chr19 14560135 14560489 + 0 NA intron (ENSMUSG00000024642.17, intron 3 of 3) protein_coding-intron (ENSMUSG00000024642.17, intron 5 of 19) 35227 ENSMUSG00000024642.17 ENSMUSG00000024642 ENSMUST00000235975 Tle4 protein_coding Interval_43972 chr13 38570911 38571265 + 0 NA Intergenic Intergenic 16223 ENSMUSG00000114866.1 ENSMUSG00000114866 ENSMUST00000225387 Gm40922 lincRNA Interval_127240 chr5 101821400 101822807 + 0 NA TTS (ENSMUSG00000029330.8) protein_coding-TTS (ENSMUSG00000029330.8) 11611 ENSMUSG00000105632.1 ENSMUSG00000105632 ENSMUST00000200599 Gm43272 TEC Interval_120637 chr4 149815341 149815953 + 0 NA promoter-TSS (ENSMUSG00000083173.1) processed_pseudogene-promoter-TSS (ENSMUSG00000083173.1) -425 ENSMUSG00000083173.1 ENSMUSG00000083173 ENSMUST00000119125 Gm13064 processed_pseudogene Interval_106018 chr3 90657565 90657941 + 0 NA exon (ENSMUSG00000063767.4, exon 3 of 3) protein_coding-exon (ENSMUSG00000063767.4, exon 3 of 3) 3736 ENSMUSG00000063767.4 ENSMUSG00000063767 ENSMUST00000079286 S100a7a protein_coding Interval_63856 chr16 4022473 4023382 + 0 NA Intergenic Intergenic -14228 ENSMUSG00000005980.15 ENSMUSG00000005980 ENSMUST00000175755 Dnase1 protein_coding Interval_71840 chr17 26444378 26445067 + 0 NA exon (ENSMUSG00000034413.14, exon 5 of 5) protein_coding-exon (ENSMUSG00000034413.14, exon 5 of 5) 19435 ENSMUSG00000118232.1 ENSMUSG00000118232 ENSMUST00000236943 Gm50269 lincRNA Interval_26836 chr11 60953049 60954578 + 0 NA Intergenic Intergenic 21759 ENSMUSG00000018932.9 ENSMUSG00000018932 ENSMUST00000137609 Map2k3 protein_coding Interval_64547 chr16 13216799 13217053 + 0 NA Intergenic Intergenic 84535 ENSMUSG00000022545.13 ENSMUSG00000022545 ENSMUST00000156393 Ercc4 protein_coding Interval_63392 chr15 100782617 100783471 + 0 NA exon (ENSMUSG00000023032.12, exon 3 of 25) protein_coding-exon (ENSMUSG00000023032.12, exon 3 of 25) -19704 ENSMUSG00000023032.12 ENSMUSG00000023032 ENSMUST00000162744 Slc4a8 protein_coding Interval_99526 chr2 162967220 162967465 + 0 NA exon (ENSMUSG00000035576.13, exon 19 of 23) protein_coding-exon (ENSMUSG00000035576.13, exon 19 of 23) 15919 ENSMUSG00000080962.1 ENSMUSG00000080962 ENSMUST00000117318 Gm11453 processed_pseudogene Interval_48357 chr13 98494345 98494866 + 0 NA Intergenic Intergenic -2604 ENSMUSG00000092116.1 ENSMUSG00000092116 ENSMUST00000170205 Gm10320 protein_coding Interval_151736 chr7 126338641 126340266 + 0 NA Intergenic Intergenic 12144 ENSMUSG00000108417.1 ENSMUSG00000108417 ENSMUST00000205858 Gm30928 lincRNA Interval_22242 chr11 7927026 7927646 + 0 NA Intergenic Intergenic -40831 ENSMUSG00000098853.1 ENSMUSG00000098853 ENSMUST00000157263 Gm27393 snRNA Interval_103855 chr3 53721797 53722372 + 0 NA Intergenic Intergenic -3393 ENSMUSG00000105168.1 ENSMUSG00000105168 ENSMUST00000199488 Gm30735 lincRNA Interval_39306 chr12 86556141 86557679 + 0 NA Intergenic Intergenic 86793 ENSMUSG00000021255.17 ENSMUSG00000021255 ENSMUST00000136464 Esrrb protein_coding Interval_81052 chr18 53336677 53336843 + 0 NA intron (ENSMUSG00000024535.16, intron 3 of 3) protein_coding-intron (ENSMUSG00000024535.16, intron 2 of 7) 81355 ENSMUSG00000024538.8 ENSMUSG00000024538 ENSMUST00000025419 Ppic protein_coding Interval_34056 chr11 120230987 120232973 + 0 NA promoter-TSS (ENSMUSG00000039741.15) protein_coding-promoter-TSS (ENSMUSG00000039741.15) -395 ENSMUSG00000043993.6 ENSMUSG00000043993 ENSMUST00000139014 2900052L18Rik processed_transcript Interval_7306 chr1 128695972 128696166 + 0 NA Intergenic Intergenic -54857 ENSMUSG00000099403.1 ENSMUSG00000099403 ENSMUST00000185285 Gm29599 processed_pseudogene Interval_128210 chr5 111760558 111762311 + 0 NA intron (ENSMUSG00000085271.7, intron 1 of 4) lincRNA-intron (ENSMUSG00000085271.7, intron 1 of 4) 269 ENSMUSG00000085271.7 ENSMUSG00000085271 ENSMUST00000129146 E130006D01Rik lincRNA Interval_165487 chr9 48630398 48631534 + 0 NA Intergenic Intergenic -33591 ENSMUSG00000032271.13 ENSMUSG00000032271 ENSMUST00000128076 Nnmt protein_coding Interval_100586 chr2 170274259 170274593 + 0 NA Intergenic Intergenic -10609 ENSMUSG00000084013.1 ENSMUSG00000084013 ENSMUST00000118388 Gm14270 processed_pseudogene Interval_130597 chr5 129101281 129102612 + 0 NA intron (ENSMUSG00000044017.16, intron 2 of 24) protein_coding-intron (ENSMUSG00000044017.16, intron 2 of 25) 5189 ENSMUSG00000044017.16 ENSMUSG00000044017 ENSMUST00000156437 Adgrd1 protein_coding Interval_64165 chr16 8791773 8792668 + 0 NA promoter-TSS (ENSMUSG00000022710.17) protein_coding-promoter-TSS (ENSMUSG00000022710.17) -25944 ENSMUSG00000084737.1 ENSMUSG00000084737 ENSMUST00000122788 Gm25805 snRNA Interval_120153 chr4 143091953 143092943 + 0 NA Intergenic Intergenic -18682 ENSMUSG00000110067.2 ENSMUSG00000110067 ENSMUST00000238915 6330411D24Rik protein_coding Interval_7255 chr1 128261959 128263089 + 0 NA intron (ENSMUSG00000026353.9, intron 2 of 5) protein_coding-intron (ENSMUSG00000026353.9, intron 7 of 12) 18560 ENSMUSG00000026353.9 ENSMUSG00000026353 ENSMUST00000189895 Ubxn4 protein_coding Interval_2434 chr1 39326082 39326592 + 0 NA intron (ENSMUSG00000026077.15, intron 10 of 20) protein_coding-intron (ENSMUSG00000026077.15, intron 10 of 20) 11438 ENSMUSG00000092563.1 ENSMUSG00000092563 ENSMUST00000173076 Gm3617 processed_pseudogene Interval_125112 chr5 64597123 64598007 + 0 NA intron (ENSMUSG00000105402.4, intron 3 of 3) lincRNA-intron (ENSMUSG00000105402.4, intron 3 of 3) 13135 ENSMUSG00000105402.4 ENSMUSG00000105402 ENSMUST00000196283 Gm3716 lincRNA Interval_59724 chr15 58917028 58917544 + 0 NA intron (ENSMUSG00000050891.10, intron 6 of 11) protein_coding-intron (ENSMUSG00000050891.10, intron 6 of 11) -1108 ENSMUSG00000050891.10 ENSMUSG00000050891 ENSMUST00000228230 Tatdn1 protein_coding Interval_65743 chr16 26885980 26886195 + 0 NA Intergenic Intergenic 82158 ENSMUSG00000068428.7 ENSMUSG00000068428 ENSMUST00000231299 Gmnc protein_coding Interval_116253 chr4 109058311 109058635 + 0 NA promoter-TSS (ENSMUSG00000053510.12) protein_coding-promoter-TSS (ENSMUSG00000053510.12) 34267 ENSMUSG00000053510.12 ENSMUSG00000053510 ENSMUST00000125063 Nrd1 protein_coding Interval_148935 chr7 90175695 90176038 + 0 NA intron (ENSMUSG00000039361.11, intron 9 of 19) protein_coding-intron (ENSMUSG00000039361.11, intron 9 of 20) -10061 ENSMUSG00000109005.1 ENSMUSG00000109005 ENSMUST00000207822 Gm45221 TEC Interval_59012 chr15 41676864 41677133 + 0 NA intron (ENSMUSG00000022307.16, intron 3 of 15) protein_coding-intron (ENSMUSG00000022307.16, intron 3 of 15) 111913 ENSMUSG00000097232.1 ENSMUSG00000097232 ENSMUST00000180418 Gm26854 antisense Interval_77666 chr17 93904954 93906387 + 0 NA Intergenic Intergenic -224636 ENSMUSG00000117537.1 ENSMUSG00000117537 ENSMUST00000234228 Gm50003 processed_pseudogene Interval_146844 chr7 53107364 53109234 + 0 NA Intergenic Intergenic 181229 ENSMUSG00000070203.1 ENSMUSG00000070203 ENSMUST00000093693 Gm22444 snRNA Interval_116011 chr4 106964645 106965019 + 0 NA intron (ENSMUSG00000061887.14, intron 1 of 13) protein_coding-intron (ENSMUSG00000061887.14, intron 4 of 17) 57667 ENSMUSG00000085581.1 ENSMUSG00000085581 ENSMUST00000129617 Gm12786 antisense Interval_13404 chr10 17820113 17821524 + 0 NA intron (ENSMUSG00000039891.6, intron 4 of 9) protein_coding-intron (ENSMUSG00000039891.6, intron 4 of 9) 3439 ENSMUSG00000093537.1 ENSMUSG00000093537 ENSMUST00000175829 Gm7584 processed_pseudogene Interval_126745 chr5 92485992 92486180 + 0 NA intron (ENSMUSG00000029426.8, intron 1 of 11) protein_coding-intron (ENSMUSG00000029426.8, intron 1 of 11) 20747 ENSMUSG00000029426.8 ENSMUSG00000029426 ENSMUST00000201253 Scarb2 protein_coding Interval_91412 chr2 38635007 38635191 + 0 NA intron (ENSMUSG00000026750.6, intron 4 of 5) protein_coding-intron (ENSMUSG00000026750.6, intron 4 of 7) 2044 ENSMUSG00000095278.2 ENSMUSG00000095278 ENSMUST00000175060 Gm27634 miRNA Interval_133840 chr6 13197501 13198275 + 0 NA intron (ENSMUSG00000079679.3, intron 3 of 3) protein_coding-intron (ENSMUSG00000079679.3, intron 6 of 11) -20826 ENSMUSG00000079679.3 ENSMUSG00000079679 ENSMUST00000204339 Vwde protein_coding Interval_26140 chr11 54716254 54716938 + 0 NA TTS (ENSMUSG00000052298.12) protein_coding-TTS (ENSMUSG00000052298.12) -12081 ENSMUSG00000086039.1 ENSMUSG00000086039 ENSMUST00000147847 Gm12227 antisense Interval_133831 chr6 13012760 13013074 + 0 NA Intergenic Intergenic 43680 ENSMUSG00000098052.1 ENSMUSG00000098052 ENSMUST00000182201 Gm5300 processed_pseudogene Interval_165871 chr9 53990890 53993119 + 0 NA Intergenic Intergenic -51308 ENSMUSG00000111379.1 ENSMUSG00000111379 ENSMUST00000217574 Gm48346 lincRNA Interval_14307 chr10 30727525 30727867 + 0 NA intron (ENSMUSG00000039697.16, intron 1 of 13) protein_coding-intron (ENSMUSG00000039697.16, intron 2 of 15) 16266 ENSMUSG00000110894.1 ENSMUSG00000110894 ENSMUST00000215097 Gm48335 TEC Interval_110864 chr4 9142300 9142504 + 0 NA Intergenic Intergenic -67601 ENSMUSG00000075958.1 ENSMUSG00000075958 ENSMUST00000082782 Gm23423 snRNA Interval_91442 chr2 38899802 38900252 + 0 NA intron (ENSMUSG00000063972.13, intron 1 of 5) protein_coding-intron (ENSMUSG00000063972.13, intron 1 of 10) -31951 ENSMUSG00000046618.7 ENSMUSG00000046618 ENSMUST00000057279 Olfml2a protein_coding Interval_62088 chr15 86385167 86385536 + 0 NA intron (ENSMUSG00000051864.10, intron 10 of 12) protein_coding-intron (ENSMUSG00000051864.10, intron 10 of 12) 89747 ENSMUSG00000115918.1 ENSMUSG00000115918 ENSMUST00000229685 A930001M01Rik antisense Interval_164170 chr9 32142773 32143682 + 0 NA intron (ENSMUSG00000041444.14, intron 1 of 5) protein_coding-intron (ENSMUSG00000041444.14, intron 2 of 21) 31941 ENSMUSG00000111382.1 ENSMUSG00000111382 ENSMUST00000213983 Gm47536 processed_pseudogene Interval_63038 chr15 98773998 98774322 + 0 NA exon (ENSMUSG00000022996.15, exon 4 of 5) protein_coding-exon (ENSMUSG00000022996.15, exon 4 of 5) 2869 ENSMUSG00000022996.15 ENSMUSG00000022996 ENSMUST00000226846 Wnt10b protein_coding Interval_79685 chr18 34511807 34512361 + 0 NA Intergenic Intergenic 2347 ENSMUSG00000084467.1 ENSMUSG00000084467 ENSMUST00000122518 n-R5s24 rRNA Interval_747 chr1 10534882 10535322 + 0 NA intron (ENSMUSG00000042501.12, intron 2 of 10) protein_coding-intron (ENSMUSG00000042501.12, intron 2 of 10) 20451 ENSMUSG00000083422.1 ENSMUSG00000083422 ENSMUST00000118350 Gm15604 processed_pseudogene Interval_24309 chr11 32267041 32268311 + 0 NA promoter-TSS (ENSMUSG00000020289.15) protein_coding-promoter-TSS (ENSMUSG00000020289.15) -18 ENSMUSG00000020289.15 ENSMUSG00000020289 ENSMUST00000132856 Nprl3 protein_coding Interval_117102 chr4 119538956 119540508 + 0 NA promoter-TSS (ENSMUSG00000032998.16) protein_coding-promoter-TSS (ENSMUSG00000032998.16) -203 ENSMUSG00000087385.8 ENSMUSG00000087385 ENSMUST00000177165 Frg2f1 protein_coding Interval_50006 chr13 119649057 119649765 + 0 NA promoter-TSS (ENSMUSG00000074715.3) protein_coding-promoter-TSS (ENSMUSG00000074715.3) -105 ENSMUSG00000074715.3 ENSMUSG00000074715 ENSMUST00000225880 Ccl28 protein_coding Interval_35381 chr12 21186726 21187082 + 0 NA intron (ENSMUSG00000052632.16, intron 8 of 9) protein_coding-intron (ENSMUSG00000052632.16, intron 3 of 26) 60419 ENSMUSG00000118655.1 ENSMUSG00000118655 ENSMUST00000172962 AC156032.1 processed_transcript Interval_95025 chr2 103265806 103266224 + 0 NA TTS (ENSMUSG00000012350.15) protein_coding-TTS (ENSMUSG00000012350.15) -33051 ENSMUSG00000084385.1 ENSMUSG00000084385 ENSMUST00000119208 Gm13873 processed_pseudogene Interval_48124 chr13 96425006 96425213 + 0 NA intron (ENSMUSG00000047117.13, intron 10 of 13) protein_coding-intron (ENSMUSG00000047117.13, intron 11 of 14) 20606 ENSMUSG00000021671.9 ENSMUSG00000021671 ENSMUST00000222792 Poc5 protein_coding Interval_43054 chr13 23506067 23507731 + 0 NA Intergenic Intergenic -11243 ENSMUSG00000104750.1 ENSMUSG00000104750 ENSMUST00000199903 n-TStga1 miRNA Interval_14351 chr10 31346851 31347471 + 0 NA intron (ENSMUSG00000000296.8, intron 3 of 5) protein_coding-intron (ENSMUSG00000000296.8, intron 3 of 6) 25743 ENSMUSG00000111664.1 ENSMUSG00000111664 ENSMUST00000214047 Gm48865 TEC Interval_47 GL456212.1 72746 73944 + 0 NA NA NA NA NA Interval_18378 chr10 85425566 85425822 + 0 NA intron (ENSMUSG00000020042.15, intron 1 of 16) protein_coding-intron (ENSMUSG00000020042.15, intron 1 of 9) 91793 ENSMUSG00000087895.1 ENSMUSG00000087895 ENSMUST00000157270 Gm25281 miRNA Interval_9383 chr1 156700706 156701216 + 0 NA TTS (ENSMUSG00000033557.17) protein_coding-TTS (ENSMUSG00000033557.17) -2076 ENSMUSG00000033557.17 ENSMUSG00000033557 ENSMUST00000147931 Fam20b protein_coding Interval_128971 chr5 116389839 116390481 + 0 NA TTS (ENSMUSG00000086945.1) lincRNA-TTS (ENSMUSG00000086945.1) 2640 ENSMUSG00000086945.1 ENSMUSG00000086945 ENSMUST00000153818 4930562A09Rik lincRNA Interval_130262 chr5 125273687 125274122 + 0 NA Intergenic Intergenic -1089 ENSMUSG00000105039.1 ENSMUSG00000105039 ENSMUST00000198586 Gm32585 lincRNA Interval_91916 chr2 51412437 51412682 + 0 NA Intergenic Intergenic 25341 ENSMUSG00000086007.1 ENSMUSG00000086007 ENSMUST00000154530 1700057H21Rik lincRNA Interval_167840 chr9 73012651 73012869 + 0 NA TTS (ENSMUSG00000034563.16) protein_coding-TTS (ENSMUSG00000034563.16) 7559 ENSMUSG00000098589.2 ENSMUSG00000098589 ENSMUST00000184712 Gm27353 miRNA Interval_123154 chr5 30160786 30160986 + 0 NA intron (ENSMUSG00000059447.13, intron 1 of 15) protein_coding-intron (ENSMUSG00000059447.13, intron 1 of 15) 5583 ENSMUSG00000059447.13 ENSMUSG00000059447 ENSMUST00000141236 Hadhb protein_coding Interval_169192 chr9 95433077 95433377 + 0 NA Intergenic Intergenic 7597 ENSMUSG00000101459.1 ENSMUSG00000101459 ENSMUST00000190263 Gm19193 processed_pseudogene Interval_152998 chr7 140717548 140717769 + 0 NA intron (ENSMUSG00000110199.2, intron 1 of 1) transcribed_unprocessed_pseudogene-intron (ENSMUSG00000110199.2, intron 1 of 1) 185 ENSMUSG00000110199.2 ENSMUSG00000110199 ENSMUST00000211706 Olfr542-ps1 transcribed_unprocessed_pseudogene Interval_15833 chr10 57782000 57782268 + 0 NA promoter-TSS (ENSMUSG00000093552.1) processed_pseudogene-promoter-TSS (ENSMUSG00000093552.1) -220 ENSMUSG00000093552.1 ENSMUSG00000093552 ENSMUST00000177265 Gm5777 processed_pseudogene Interval_171074 chr9 114394055 114395697 + 0 NA Intergenic Intergenic -6229 ENSMUSG00000079260.3 ENSMUSG00000079260 ENSMUST00000111820 Tmppe protein_coding Interval_7466 chr1 131579626 131579841 + 0 NA Intergenic Intergenic -19990 ENSMUSG00000026432.7 ENSMUSG00000026432 ENSMUST00000190410 Avpr1b protein_coding Interval_132277 chr5 143890571 143891390 + 0 NA exon (ENSMUSG00000029607.14, exon 3 of 3) protein_coding-exon (ENSMUSG00000029607.14, exon 3 of 3) 6705 ENSMUSG00000029607.14 ENSMUSG00000029607 ENSMUST00000110718 Ankrd61 protein_coding Interval_110136 chr3 153645437 153646010 + 0 NA intron (ENSMUSG00000052544.9, intron 1 of 4) protein_coding-intron (ENSMUSG00000052544.9, intron 1 of 2) 24021 ENSMUSG00000089376.1 ENSMUSG00000089376 ENSMUST00000158751 Gm22136 misc_RNA Interval_56983 chr14 124731600 124731847 + 0 NA intron (ENSMUSG00000115490.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000115490.1, intron 1 of 1) 11074 ENSMUSG00000115490.1 ENSMUSG00000115490 ENSMUST00000226645 4930404O17Rik lincRNA Interval_100353 chr2 168589722 168591463 + 0 NA promoter-TSS (ENSMUSG00000027544.16) protein_coding-promoter-TSS (ENSMUSG00000027544.16) 11063 ENSMUSG00000027544.16 ENSMUSG00000027544 ENSMUST00000138546 Nfatc2 protein_coding Interval_29529 chr11 84709067 84709888 + 0 NA Intergenic Intergenic 10955 ENSMUSG00000085044.1 ENSMUSG00000085044 ENSMUST00000150735 1700109G15Rik lincRNA Interval_66676 chr16 36055549 36056622 + 0 NA intron (ENSMUSG00000003955.8, intron 1 of 2) protein_coding-intron (ENSMUSG00000003955.8, intron 1 of 4) -3691 ENSMUSG00000003955.8 ENSMUSG00000003955 ENSMUST00000231379 Fam162a protein_coding Interval_167201 chr9 66124236 66125483 + 0 NA promoter-TSS (ENSMUSG00000032382.14) protein_coding-promoter-TSS (ENSMUSG00000032382.14) -1752 ENSMUSG00000032381.5 ENSMUSG00000032381 ENSMUST00000034945 Ciao2a protein_coding Interval_102645 chr3 28841900 28843401 + 0 NA Intergenic Intergenic 11607 ENSMUSG00000104275.1 ENSMUSG00000104275 ENSMUST00000192066 Gm37867 lincRNA Interval_31177 chr11 98721486 98721731 + 0 NA intron (ENSMUSG00000017210.14, intron 3 of 3) protein_coding-intron (ENSMUSG00000017210.14, intron 3 of 25) -10519 ENSMUSG00000088169.1 ENSMUSG00000088169 ENSMUST00000157544 Gm22059 snoRNA Interval_136381 chr6 53993926 53994764 + 0 NA intron (ENSMUSG00000108060.2, intron 1 of 1) processed_transcript-intron (ENSMUSG00000108060.2, intron 1 of 3) 15616 ENSMUSG00000108060.2 ENSMUSG00000108060 ENSMUST00000203047 4921529L05Rik processed_transcript Interval_24690 chr11 35933503 35934003 + 0 NA intron (ENSMUSG00000018849.6, intron 1 of 22) protein_coding-intron (ENSMUSG00000018849.6, intron 1 of 22) -62301 ENSMUSG00000081571.1 ENSMUSG00000081571 ENSMUST00000117261 Gm12125 processed_pseudogene Interval_1147 chr1 16129740 16131033 + 0 NA promoter-TSS (ENSMUSG00000025921.7) protein_coding-promoter-TSS (ENSMUSG00000025921.7) -116 ENSMUSG00000025921.7 ENSMUSG00000025921 ENSMUST00000152626 Rdh10 protein_coding Interval_80979 chr18 52135605 52135808 + 0 NA Intergenic Intergenic 18901 ENSMUSG00000096863.1 ENSMUSG00000096863 ENSMUST00000178926 Gm22259 snRNA Interval_16670 chr10 66942267 66943222 + 0 NA Intergenic Intergenic 22442 ENSMUSG00000097921.2 ENSMUSG00000097921 ENSMUST00000181018 Gm26576 lincRNA Interval_161853 chr8 123205862 123206763 + 0 NA promoter-TSS (ENSMUSG00000069862.6) processed_pseudogene-promoter-TSS (ENSMUSG00000069862.6) -311 ENSMUSG00000069862.6 ENSMUSG00000069862 ENSMUST00000139165 Rps12-ps9 processed_pseudogene Interval_96223 chr2 120655768 120656999 + 0 NA intron (ENSMUSG00000033705.17, intron 3 of 31) protein_coding-intron (ENSMUSG00000033705.17, intron 3 of 33) -12577 ENSMUSG00000033705.17 ENSMUSG00000033705 ENSMUST00000129384 Stard9 protein_coding Interval_146024 chr7 43271916 43272249 + 0 NA Intergenic Intergenic 41212 ENSMUSG00000012640.16 ENSMUSG00000012640 ENSMUST00000135130 Zfp715 protein_coding Interval_73747 chr17 43161268 43161585 + 0 NA Intergenic Intergenic -3160 ENSMUSG00000117011.1 ENSMUSG00000117011 ENSMUST00000232795 E130008D07Rik lincRNA Interval_25558 chr11 49755311 49755699 + 0 NA Intergenic Intergenic -16328 ENSMUSG00000092894.1 ENSMUSG00000092894 ENSMUST00000175153 Gm23813 miRNA Interval_148270 chr7 80207194 80208497 + 0 NA intron (ENSMUSG00000030539.13, intron 1 of 13) protein_coding-intron (ENSMUSG00000030539.13, intron 2 of 14) -1549 ENSMUSG00000108389.1 ENSMUSG00000108389 ENSMUST00000206885 Gm45206 TEC Interval_112028 chr4 33328062 33329376 + 0 NA intron (ENSMUSG00000028274.17, intron 2 of 5) protein_coding-intron (ENSMUSG00000028274.17, intron 4 of 15) 3821 ENSMUSG00000028274.17 ENSMUSG00000028274 ENSMUST00000146870 Rngtt protein_coding Interval_160681 chr8 111560162 111560353 + 0 NA intron (ENSMUSG00000033545.14, intron 1 of 3) protein_coding-intron (ENSMUSG00000033545.14, intron 1 of 3) 22679 ENSMUSG00000033545.14 ENSMUSG00000033545 ENSMUST00000173819 Znrf1 protein_coding Interval_100909 chr2 173284569 173285745 + 0 NA Intergenic Intergenic 8459 ENSMUSG00000087600.1 ENSMUSG00000087600 ENSMUST00000150185 Pmepa1os antisense Interval_76058 chr17 74627658 74627998 + 0 NA intron (ENSMUSG00000024073.16, intron 38 of 72) protein_coding-intron (ENSMUSG00000024073.16, intron 38 of 72) -7894 ENSMUSG00000024073.16 ENSMUSG00000024073 ENSMUST00000182157 Birc6 protein_coding Interval_32362 chr11 107153387 107155381 + 0 NA Intergenic Intergenic -3024 ENSMUSG00000087596.1 ENSMUSG00000087596 ENSMUST00000129501 Gm11715 antisense Interval_8126 chr1 135850869 135851148 + 0 NA intron (ENSMUSG00000026414.13, intron 13 of 15) protein_coding-intron (ENSMUSG00000026414.13, intron 11 of 13) 14618 ENSMUSG00000026414.13 ENSMUSG00000026414 ENSMUST00000188098 Tnnt2 protein_coding Interval_28083 chr11 72708659 72709060 + 0 NA intron (ENSMUSG00000020790.14, intron 1 of 24) protein_coding-intron (ENSMUSG00000020790.14, intron 1 of 24) 18853 ENSMUSG00000020790.14 ENSMUSG00000020790 ENSMUST00000132889 Ankfy1 protein_coding Interval_5352 chr1 87807452 87808082 + 0 NA intron (ENSMUSG00000056055.13, intron 2 of 15) protein_coding-intron (ENSMUSG00000056055.13, intron 2 of 15) 4087 ENSMUSG00000056055.13 ENSMUSG00000056055 ENSMUST00000145385 Sag protein_coding Interval_164880 chr9 42764963 42765227 + 0 NA intron (ENSMUSG00000032017.14, intron 3 of 20) protein_coding-intron (ENSMUSG00000032017.14, intron 1 of 18) 97034 ENSMUSG00000076355.2 ENSMUSG00000076355 ENSMUST00000102400 Gm27509 miRNA Interval_11732 chr1 184963390 184963727 + 0 NA intron (ENSMUSG00000026620.11, intron 1 of 17) protein_coding-intron (ENSMUSG00000026620.11, intron 1 of 17) 35917 ENSMUSG00000026620.11 ENSMUSG00000026620 ENSMUST00000192657 Mark1 protein_coding Interval_48767 chr13 102925827 102926056 + 0 NA intron (ENSMUSG00000034751.17, intron 3 of 27) protein_coding-intron (ENSMUSG00000034751.17, intron 2 of 27) 163506 ENSMUSG00000090329.1 ENSMUSG00000090329 ENSMUST00000170645 Gm17160 antisense Interval_128760 chr5 115126404 115127430 + 0 NA intron (ENSMUSG00000046562.5, intron 2 of 2) protein_coding-intron (ENSMUSG00000046562.5, intron 4 of 4) -7607 ENSMUSG00000029545.13 ENSMUSG00000029545 ENSMUST00000141142 Acads protein_coding Interval_138991 chr6 94054006 94054245 + 0 NA intron (ENSMUSG00000045095.16, intron 1 of 24) protein_coding-intron (ENSMUSG00000045095.16, intron 1 of 21) -141621 ENSMUSG00000045095.16 ENSMUSG00000045095 ENSMUST00000203034 Magi1 protein_coding Interval_133370 chr6 4066837 4067246 + 0 NA Intergenic Intergenic -19456 ENSMUSG00000107681.1 ENSMUSG00000107681 ENSMUST00000204264 4930528H21Rik lincRNA Interval_78358 chr18 12158748 12160923 + 0 NA Intergenic Intergenic -3603 ENSMUSG00000084748.1 ENSMUSG00000084748 ENSMUST00000122799 Gm25289 snRNA Interval_108812 chr3 131748800 131749150 + 0 NA Intergenic Intergenic -10830 ENSMUSG00000105331.1 ENSMUSG00000105331 ENSMUST00000197726 Gm29865 lincRNA Interval_84116 chr19 7301995 7302776 + 0 NA intron (ENSMUSG00000091558.1, intron 1 of 1) protein_coding-intron (ENSMUSG00000024969.15, intron 1 of 17) 4727 ENSMUSG00000091558.1 ENSMUSG00000091558 ENSMUST00000166590 Gm17227 antisense Interval_14298 chr10 30617899 30618804 + 0 NA promoter-TSS (ENSMUSG00000019791.12) protein_coding-promoter-TSS (ENSMUSG00000019791.12) -3799 ENSMUSG00000019791.12 ENSMUSG00000019791 ENSMUST00000214782 Hint3 protein_coding Interval_82290 chr18 70227208 70228010 + 0 NA Intergenic Intergenic 16973 ENSMUSG00000024512.4 ENSMUSG00000024512 ENSMUST00000025390 Dynap protein_coding Interval_117446 chr4 123730848 123731133 + 0 NA Intergenic Intergenic -12809 ENSMUSG00000028648.13 ENSMUSG00000028648 ENSMUST00000137312 Ndufs5 protein_coding Interval_109923 chr3 151713516 151713798 + 0 NA Intergenic Intergenic 36225 ENSMUSG00000028037.13 ENSMUSG00000028037 ENSMUST00000127733 Ifi44 protein_coding Interval_128655 chr5 114541557 114542583 + 0 NA Intergenic Intergenic -9219 ENSMUSG00000086302.1 ENSMUSG00000086302 ENSMUST00000156209 Gm13790 lincRNA Interval_7046 chr1 123759599 123760805 + 0 NA intron (ENSMUSG00000036815.17, intron 3 of 25) protein_coding-intron (ENSMUSG00000036815.17, intron 3 of 25) 3644 ENSMUSG00000101985.1 ENSMUSG00000101985 ENSMUST00000185330 Gm28929 processed_pseudogene Interval_90833 chr2 32877760 32878791 + 0 NA intron (ENSMUSG00000026796.16, intron 1 of 13) protein_coding-intron (ENSMUSG00000026796.16, intron 1 of 13) -2274 ENSMUSG00000087496.1 ENSMUSG00000087496 ENSMUST00000151820 Gm13523 antisense Interval_16136 chr10 60952549 60952840 + 0 NA Intergenic Intergenic -8029 ENSMUSG00000080526.1 ENSMUSG00000080526 ENSMUST00000116876 Mir466j miRNA Interval_5977 chr1 93679600 93680585 + 0 NA Intergenic Intergenic -5610 ENSMUSG00000026278.14 ENSMUSG00000026278 ENSMUST00000185685 Bok protein_coding Interval_154568 chr8 19940580 19940837 + 0 NA Intergenic Intergenic 2557 ENSMUSG00000110460.1 ENSMUSG00000110460 ENSMUST00000212649 Gm20786 processed_pseudogene Interval_84871 chr19 18445371 18445941 + 0 NA Intergenic Intergenic -34420 ENSMUSG00000118192.1 ENSMUSG00000118192 ENSMUST00000237767 Gm50183 processed_pseudogene Interval_150226 chr7 108529174 108530641 + 0 NA promoter-TSS (ENSMUSG00000109250.1) processed_pseudogene-promoter-TSS (ENSMUSG00000109250.1) -833 ENSMUSG00000109250.1 ENSMUSG00000109250 ENSMUST00000208361 Gm5053 processed_pseudogene Interval_27798 chr11 70055398 70056193 + 0 NA promoter-TSS (ENSMUSG00000020884.15) protein_coding-promoter-TSS (ENSMUSG00000020884.15) 1710 ENSMUSG00000020884.15 ENSMUSG00000020884 ENSMUST00000123369 Asgr1 protein_coding Interval_56170 chr14 110151627 110151872 + 0 NA Intergenic Intergenic -10086 ENSMUSG00000065102.1 ENSMUSG00000065102 ENSMUST00000083168 n-R5s50 rRNA Interval_72235 chr17 28733107 28733596 + 0 NA intron (ENSMUSG00000053436.15, intron 8 of 11) protein_coding-intron (ENSMUSG00000053436.15, intron 8 of 11) 7268 ENSMUSG00000117145.1 ENSMUSG00000117145 ENSMUST00000233003 Gm4356 protein_coding Interval_11905 chr1 186956416 186956796 + 0 NA Intergenic Intergenic -3902 ENSMUSG00000097935.1 ENSMUSG00000097935 ENSMUST00000180973 Gm3809 processed_pseudogene Interval_40364 chr12 104418198 104419684 + 0 NA TTS (ENSMUSG00000077398.1) snoRNA-TTS (ENSMUSG00000077398.1) 459 ENSMUSG00000077398.1 ENSMUSG00000077398 ENSMUST00000104210 Gm24334 snoRNA Interval_163442 chr9 21454884 21457408 + 0 NA promoter-TSS (ENSMUSG00000033335.17) protein_coding-promoter-TSS (ENSMUSG00000033335.17) 31178 ENSMUSG00000033335.17 ENSMUSG00000033335 ENSMUST00000174243 Dnm2 protein_coding Interval_121742 chr5 6314989 6315633 + 0 NA Intergenic Intergenic -1320 ENSMUSG00000105370.1 ENSMUSG00000105370 ENSMUST00000197319 Gm42718 processed_pseudogene Interval_150034 chr7 105224786 105226508 + 0 NA Intergenic Intergenic -20492 ENSMUSG00000048425.3 ENSMUSG00000048425 ENSMUST00000050157 Olfr686 protein_coding Interval_153177 chr7 142094394 142096015 + 0 NA promoter-TSS (ENSMUSG00000037887.11) protein_coding-promoter-TSS (ENSMUSG00000037887.11) -554 ENSMUSG00000109958.1 ENSMUSG00000109958 ENSMUST00000211351 Gm32786 bidirectional_promoter_lncRNA Interval_64816 chr16 16117660 16118254 + 0 NA intron (ENSMUSG00000041974.10, intron 4 of 16) protein_coding-intron (ENSMUSG00000041974.10, intron 4 of 19) 18359 ENSMUSG00000116385.1 ENSMUSG00000116385 ENSMUST00000230117 Gm18334 processed_pseudogene Interval_167609 chr9 71073894 71074121 + 0 NA Intergenic Intergenic -52835 ENSMUSG00000111618.1 ENSMUSG00000111618 ENSMUST00000213527 Gm47268 processed_pseudogene Interval_71498 chr17 24168480 24170815 + 0 NA promoter-TSS (ENSMUSG00000024121.13) protein_coding-promoter-TSS (ENSMUSG00000024121.13) -581 ENSMUSG00000024121.13 ENSMUSG00000024121 ENSMUST00000150647 Atp6v0c protein_coding Interval_2238 chr1 37272007 37273298 + 0 NA Intergenic Intergenic 27045 ENSMUSG00000102231.1 ENSMUSG00000102231 ENSMUST00000192404 1700074A21Rik TEC Interval_21906 chr11 5125520 5125810 + 0 NA intron (ENSMUSG00000034164.17, intron 12 of 14) protein_coding-intron (ENSMUSG00000034164.17, intron 12 of 14) 26189 ENSMUSG00000034175.13 ENSMUSG00000034175 ENSMUST00000129016 Rhbdd3 protein_coding Interval_22438 chr11 10102301 10103900 + 0 NA Intergenic Intergenic -136237 ENSMUSG00000082312.1 ENSMUSG00000082312 ENSMUST00000117538 Gm11996 processed_pseudogene Interval_173362 chrX 85048035 85048999 + 0 NA intron (ENSMUSG00000045103.19, intron 1 of 12) protein_coding-intron (ENSMUSG00000045103.19, intron 1 of 17) 168630 ENSMUSG00000084281.1 ENSMUSG00000084281 ENSMUST00000122197 Gm14770 processed_pseudogene Interval_172028 chr9 123656849 123657049 + 0 NA intron (ENSMUSG00000036814.13, intron 4 of 9) protein_coding-intron (ENSMUSG00000036814.13, intron 5 of 10) -9962 ENSMUSG00000111340.1 ENSMUSG00000111340 ENSMUST00000216052 Gm47171 TEC Interval_5314 chr1 87489049 87489327 + 0 NA intron (ENSMUSG00000026259.14, intron 6 of 14) protein_coding-intron (ENSMUSG00000026259.14, intron 4 of 12) -3011 ENSMUSG00000026259.14 ENSMUSG00000026259 ENSMUST00000166463 Ngef protein_coding Interval_86268 chr19 38271119 38271520 + 0 NA intron (ENSMUSG00000067242.11, intron 2 of 2) protein_coding-intron (ENSMUSG00000067242.11, intron 2 of 7) 6742 ENSMUSG00000067242.11 ENSMUSG00000067242 ENSMUST00000130039 Lgi1 protein_coding Interval_28520 chr11 76472771 76473063 + 0 NA intron (ENSMUSG00000017631.19, intron 4 of 22) protein_coding-intron (ENSMUSG00000017631.19, intron 4 of 22) -41152 ENSMUSG00000080763.2 ENSMUSG00000080763 ENSMUST00000119724 Gm12341 processed_pseudogene Interval_148902 chr7 89939813 89941737 + 0 NA exon (ENSMUSG00000062797.14, exon 1 of 1) protein_coding-exon (ENSMUSG00000062797.14, exon 1 of 1) 424 ENSMUSG00000062797.14 ENSMUSG00000062797 ENSMUST00000207695 Hikeshi protein_coding Interval_153272 chr7 143116554 143116780 + 0 NA intron (ENSMUSG00000009545.14, intron 1 of 1) protein_coding-intron (ENSMUSG00000009545.14, intron 1 of 15) 7473 ENSMUSG00000009545.14 ENSMUSG00000009545 ENSMUST00000187213 Kcnq1 protein_coding Interval_69654 chr16 94902117 94902689 + 0 NA intron (ENSMUSG00000043301.16, intron 2 of 3) protein_coding-intron (ENSMUSG00000043301.16, intron 2 of 4) 32939 ENSMUSG00000095435.1 ENSMUSG00000095435 ENSMUST00000175509 Gm22745 miRNA Interval_169159 chr9 94696849 94697449 + 0 NA exon (ENSMUSG00000089709.1, exon 2 of 2) antisense-exon (ENSMUSG00000089709.1, exon 2 of 2) 5170 ENSMUSG00000089709.1 ENSMUSG00000089709 ENSMUST00000162306 Gm16262 antisense Interval_132160 chr5 143004243 143005169 + 0 NA intron (ENSMUSG00000045078.12, intron 15 of 16) protein_coding-intron (ENSMUSG00000045078.12, intron 15 of 16) 44330 ENSMUSG00000029581.14 ENSMUSG00000029581 ENSMUST00000135293 Fscn1 protein_coding Interval_124996 chr5 63565423 63566833 + 0 NA Intergenic Intergenic 84766 ENSMUSG00000104868.1 ENSMUSG00000104868 ENSMUST00000067917 Gm9954 TEC Interval_97537 chr2 139424702 139424891 + 0 NA intron (ENSMUSG00000085071.1, intron 2 of 5) processed_transcript-intron (ENSMUSG00000085071.1, intron 2 of 5) -40456 ENSMUSG00000081799.1 ENSMUSG00000081799 ENSMUST00000117817 Gm14071 processed_pseudogene Interval_26380 chr11 57508042 57508334 + 0 NA promoter-TSS (ENSMUSG00000020523.14) protein_coding-promoter-TSS (ENSMUSG00000020523.14) 10414 ENSMUSG00000020523.14 ENSMUSG00000020523 ENSMUST00000130596 Fam114a2 protein_coding Interval_75601 chr17 69225734 69226493 + 0 NA intron (ENSMUSG00000024044.19, intron 3 of 21) protein_coding-intron (ENSMUSG00000024044.19, intron 3 of 21) 51095 ENSMUSG00000100572.1 ENSMUSG00000100572 ENSMUST00000187090 2410021H03Rik antisense Interval_43957 chr13 38407715 38408480 + 0 NA intron (ENSMUSG00000039004.6, intron 1 of 3) protein_coding-intron (ENSMUSG00000039004.6, intron 1 of 6) 53708 ENSMUSG00000114895.1 ENSMUSG00000114895 ENSMUST00000225893 4930579J19Rik antisense Interval_103661 chr3 51445534 51445735 + 0 NA intron (ENSMUSG00000063273.11, intron 6 of 19) protein_coding-intron (ENSMUSG00000063273.11, intron 6 of 19) 4717 ENSMUSG00000063273.11 ENSMUSG00000063273 ENSMUST00000193267 Naa15 protein_coding Interval_45484 chr13 55393023 55393911 + 0 NA Intergenic Intergenic -14852 ENSMUSG00000021490.11 ENSMUSG00000021490 ENSMUST00000223954 Slc34a1 protein_coding Interval_88178 chr19 60348272 60348607 + 0 NA Intergenic Intergenic 106586 ENSMUSG00000099678.1 ENSMUSG00000099678 ENSMUST00000186261 Gm28351 lincRNA Interval_88546 chr2 6037038 6037398 + 0 NA intron (ENSMUSG00000043241.14, intron 5 of 10) protein_coding-intron (ENSMUSG00000043241.14, intron 16 of 21) -13209 ENSMUSG00000043241.14 ENSMUSG00000043241 ENSMUST00000144901 Upf2 protein_coding Interval_172981 chrX 59703885 59704117 + 0 NA Intergenic Intergenic -10452 ENSMUSG00000105367.1 ENSMUSG00000105367 ENSMUST00000200242 Gm44500 miRNA Interval_165637 chr9 50580349 50580550 + 0 NA intron (ENSMUSG00000039217.13, intron 5 of 5) protein_coding-intron (ENSMUSG00000039217.13, intron 4 of 4) 15075 ENSMUSG00000039217.13 ENSMUSG00000039217 ENSMUST00000059081 Il18 protein_coding Interval_78559 chr18 14706036 14706861 + 0 NA exon (ENSMUSG00000036743.4, exon 1 of 7) protein_coding-exon (ENSMUSG00000036743.4, exon 1 of 7) -20098 ENSMUSG00000036743.4 ENSMUSG00000036743 ENSMUST00000235037 Psma8 protein_coding Interval_32137 chr11 105489401 105489837 + 0 NA Intergenic Intergenic 55174 ENSMUSG00000086089.1 ENSMUSG00000086089 ENSMUST00000155987 Gm11640 antisense Interval_62236 chr15 89075384 89076579 + 0 NA promoter-TSS (ENSMUSG00000015363.13) protein_coding-promoter-TSS (ENSMUSG00000015363.13) -1684 ENSMUSG00000087331.8 ENSMUSG00000087331 ENSMUST00000150364 1810021B22Rik antisense Interval_18725 chr10 89708757 89709427 + 0 NA Intergenic Intergenic 22721 ENSMUSG00000097383.1 ENSMUSG00000097383 ENSMUST00000181598 1500026H17Rik bidirectional_promoter_lncRNA Interval_89922 chr2 26507263 26508068 + 0 NA intron (ENSMUSG00000026923.15, intron 2 of 3) protein_coding-intron (ENSMUSG00000026923.15, intron 2 of 3) -37546 ENSMUSG00000098548.1 ENSMUSG00000098548 ENSMUST00000183922 Mir6996 miRNA Interval_45215 chr13 53233456 53235401 + 0 NA intron (ENSMUSG00000021464.14, intron 1 of 8) protein_coding-intron (ENSMUSG00000021464.14, intron 1 of 8) 41230 ENSMUSG00000021464.14 ENSMUSG00000021464 ENSMUST00000149299 Ror2 protein_coding Interval_152002 chr7 128126465 128126825 + 0 NA promoter-TSS (ENSMUSG00000108578.1) processed_pseudogene-promoter-TSS (ENSMUSG00000108578.1) -190 ENSMUSG00000108578.1 ENSMUSG00000108578 ENSMUST00000205866 Gm45700 processed_pseudogene Interval_86227 chr19 37945836 37946929 + 0 NA intron (ENSMUSG00000048612.16, intron 26 of 53) protein_coding-intron (ENSMUSG00000048612.16, intron 25 of 52) 76112 ENSMUSG00000118115.1 ENSMUSG00000118115 ENSMUST00000237198 Gm4757 processed_pseudogene Interval_127126 chr5 100461671 100462006 + 0 NA intron (ENSMUSG00000035310.15, intron 2 of 10) protein_coding-intron (ENSMUSG00000035310.15, intron 4 of 12) 32112 ENSMUSG00000106391.1 ENSMUSG00000106391 ENSMUST00000197921 Gm42690 TEC Interval_109624 chr3 145419186 145419458 + 0 NA promoter-TSS (ENSMUSG00000105959.1) sense_overlapping-promoter-TSS (ENSMUSG00000105959.1) -4 ENSMUSG00000105959.1 ENSMUSG00000105959 ENSMUST00000199255 D530037P16Rik sense_overlapping Interval_159091 chr8 90293652 90293902 + 0 NA intron (ENSMUSG00000043668.13, intron 1 of 5) protein_coding-intron (ENSMUSG00000043668.13, intron 1 of 6) 54354 ENSMUSG00000043668.13 ENSMUSG00000043668 ENSMUST00000176034 Tox3 protein_coding Interval_153067 chr7 141155691 141155961 + 0 NA TTS (ENSMUSG00000025495.15) protein_coding-TTS (ENSMUSG00000025495.15) 12365 ENSMUSG00000038650.15 ENSMUSG00000038650 ENSMUST00000210979 Rnh1 protein_coding Interval_65126 chr16 19993077 19993272 + 0 NA Intergenic Intergenic -26855 ENSMUSG00000043008.9 ENSMUSG00000043008 ENSMUST00000165530 Klhl6 protein_coding Interval_8000 chr1 135154092 135154999 + 0 NA TTS (ENSMUSG00000026426.10) protein_coding-TTS (ENSMUSG00000026426.10) 363 ENSMUSG00000026426.10 ENSMUSG00000026426 ENSMUST00000141177 Arl8a protein_coding Interval_106009 chr3 90612111 90613522 + 0 NA promoter-TSS (ENSMUSG00000001025.8) protein_coding-promoter-TSS (ENSMUSG00000001025.8) -944 ENSMUSG00000001025.8 ENSMUSG00000001025 ENSMUST00000200289 S100a6 protein_coding Interval_57249 chr15 8127496 8128511 + 0 NA intron (ENSMUSG00000022142.8, intron 12 of 33) protein_coding-intron (ENSMUSG00000022142.8, intron 12 of 34) -23080 ENSMUSG00000022142.8 ENSMUSG00000022142 ENSMUST00000230647 Nup155 protein_coding Interval_28489 chr11 76309009 76310147 + 0 NA intron (ENSMUSG00000020844.6, intron 1 of 7) protein_coding-intron (ENSMUSG00000020844.6, intron 1 of 7) 60366 ENSMUSG00000038046.4 ENSMUSG00000038046 ENSMUST00000155526 Mrm3 protein_coding Interval_142642 chr6 144523116 144523726 + 0 NA intron (ENSMUSG00000041540.16, intron 3 of 6) protein_coding-intron (ENSMUSG00000041540.16, intron 3 of 13) 42196 ENSMUSG00000087157.1 ENSMUSG00000087157 ENSMUST00000156443 Sox5os2 antisense Interval_98996 chr2 156532702 156533733 + 0 NA promoter-TSS (ENSMUSG00000027624.20) protein_coding-promoter-TSS (ENSMUSG00000027624.20) -14393 ENSMUSG00000027628.10 ENSMUSG00000027628 ENSMUST00000126250 Aar2 protein_coding Interval_23028 chr11 19081973 19083294 + 0 NA Intergenic Intergenic 17357 ENSMUSG00000086025.1 ENSMUSG00000086025 ENSMUST00000144854 4933406G16Rik lincRNA Interval_118813 chr4 133846702 133846915 + 0 NA TTS (ENSMUSG00000003644.17) protein_coding-TTS (ENSMUSG00000003644.17) -25674 ENSMUSG00000085009.1 ENSMUSG00000085009 ENSMUST00000134799 Gm12977 antisense Interval_84424 chr19 10812140 10812378 + 0 NA intron (ENSMUSG00000024670.17, intron 1 of 5) protein_coding-intron (ENSMUSG00000024670.17, intron 1 of 11) 17667 ENSMUSG00000024670.17 ENSMUSG00000024670 ENSMUST00000236355 Cd6 protein_coding Interval_65294 chr16 21295799 21296078 + 0 NA intron (ENSMUSG00000096918.2, intron 1 of 4) lincRNA-intron (ENSMUSG00000096918.2, intron 1 of 4) 934 ENSMUSG00000096918.2 ENSMUSG00000096918 ENSMUST00000181476 Gm16863 lincRNA Interval_78554 chr18 14669230 14669432 + 0 NA intron (ENSMUSG00000037013.17, intron 2 of 9) protein_coding-intron (ENSMUSG00000037013.17, intron 3 of 10) -21401 ENSMUSG00000094306.1 ENSMUSG00000094306 ENSMUST00000084007 Gm24924 snRNA Interval_71550 chr17 24504788 24505441 + 0 NA exon (ENSMUSG00000033597.9, exon 18 of 20) protein_coding-exon (ENSMUSG00000033597.9, exon 18 of 20) 3436 ENSMUSG00000033597.9 ENSMUSG00000033597 ENSMUST00000235032 Caskin1 protein_coding Interval_11372 chr1 181334948 181335225 + 0 NA Intergenic Intergenic -18340 ENSMUSG00000026514.14 ENSMUSG00000026514 ENSMUST00000209607 Cnih3 protein_coding Interval_117793 chr4 126254946 126256915 + 0 NA intron (ENSMUSG00000028849.17, intron 1 of 17) protein_coding-intron (ENSMUSG00000028849.17, intron 1 of 16) -6470 ENSMUSG00000028847.8 ENSMUSG00000028847 ENSMUST00000126786 Trappc3 protein_coding Interval_143972 chr7 18702691 18703474 + 0 NA Intergenic Intergenic -10508 ENSMUSG00000108882.1 ENSMUSG00000108882 ENSMUST00000207958 Gm44563 unprocessed_pseudogene Interval_123076 chr5 29434542 29435497 + 0 NA exon (ENSMUSG00000001569.10, exon 1 of 11) protein_coding-exon (ENSMUSG00000001569.10, exon 1 of 11) -6299 ENSMUSG00000001569.10 ENSMUSG00000001569 ENSMUST00000146347 Nom1 protein_coding Interval_45848 chr13 58534271 58535103 + 0 NA Intergenic Intergenic -11341 ENSMUSG00000114234.1 ENSMUSG00000114234 ENSMUST00000223882 Gm3131 processed_pseudogene Interval_7877 chr1 134328944 134329146 + 0 NA intron (ENSMUSG00000026458.13, intron 2 of 27) protein_coding-intron (ENSMUSG00000026458.13, intron 2 of 28) -24237 ENSMUSG00000026458.13 ENSMUSG00000026458 ENSMUST00000186553 Ppfia4 protein_coding Interval_128928 chr5 116138863 116139194 + 0 NA intron (ENSMUSG00000043913.14, intron 9 of 13) protein_coding-intron (ENSMUSG00000043913.14, intron 9 of 13) 15414 ENSMUSG00000086655.1 ENSMUSG00000086655 ENSMUST00000127792 C330018A13Rik antisense Interval_174449 chrX 152590684 152591326 + 0 NA Intergenic Intergenic 25793 ENSMUSG00000081993.1 ENSMUSG00000081993 ENSMUST00000118211 Gm8475 processed_pseudogene Interval_109959 chr3 152176477 152176681 + 0 NA Intergenic Intergenic 11205 ENSMUSG00000097293.1 ENSMUSG00000097293 ENSMUST00000181854 D630002J18Rik TEC Interval_163869 chr9 27316981 27317617 + 0 NA intron (ENSMUSG00000034275.18, intron 3 of 19) protein_coding-intron (ENSMUSG00000034275.18, intron 3 of 14) 18095 ENSMUSG00000034275.18 ENSMUSG00000034275 ENSMUST00000214187 Igsf9b protein_coding Interval_103701 chr3 51728801 51729534 + 0 NA intron (ENSMUSG00000061143.15, intron 2 of 4) protein_coding-intron (ENSMUSG00000061143.15, intron 1 of 3) 32921 ENSMUSG00000102732.1 ENSMUSG00000102732 ENSMUST00000194588 Gm37342 TEC Interval_166360 chr9 58595585 58596298 + 0 NA intron (ENSMUSG00000032336.17, intron 1 of 4) protein_coding-intron (ENSMUSG00000032336.17, intron 1 of 7) 13567 ENSMUSG00000032336.17 ENSMUSG00000032336 ENSMUST00000177020 Nptn protein_coding Interval_172469 chrX 20847947 20849050 + 0 NA promoter-TSS (ENSMUSG00000001127.12) protein_coding-promoter-TSS (ENSMUSG00000001127.12) -66 ENSMUSG00000001127.12 ENSMUSG00000001127 ENSMUST00000128250 Araf protein_coding Interval_24545 chr11 34236293 34236908 + 0 NA intron (ENSMUSG00000020143.15, intron 46 of 51) protein_coding-intron (ENSMUSG00000020143.15, intron 46 of 51) -28511 ENSMUSG00000047861.2 ENSMUSG00000047861 ENSMUST00000060271 Foxi1 protein_coding Interval_138485 chr6 88577653 88578739 + 0 NA intron (ENSMUSG00000033182.12, intron 4 of 4) protein_coding-intron (ENSMUSG00000033182.12, intron 5 of 5) 40326 ENSMUSG00000033182.12 ENSMUSG00000033182 ENSMUST00000184664 Kbtbd12 protein_coding Interval_165396 chr9 47362796 47363430 + 0 NA promoter-TSS (ENSMUSG00000109844.2) lincRNA-promoter-TSS (ENSMUSG00000109844.2) -92370 ENSMUSG00000109844.2 ENSMUSG00000109844 ENSMUST00000209906 Gm31816 lincRNA Interval_13156 chr10 12595306 12595566 + 0 NA intron (ENSMUSG00000019820.11, intron 51 of 74) protein_coding-intron (ENSMUSG00000019820.11, intron 50 of 73) 93426 ENSMUSG00000019820.11 ENSMUSG00000019820 ENSMUST00000219135 Utrn protein_coding Interval_64802 chr16 15909424 15910358 + 0 NA intron (ENSMUSG00000041974.10, intron 14 of 16) protein_coding-intron (ENSMUSG00000041974.10, intron 14 of 19) 21475 ENSMUSG00000071637.5 ENSMUSG00000071637 ENSMUST00000210772 Cebpd protein_coding Interval_3150 chr1 54025913 54026514 + 0 NA intron (ENSMUSG00000042807.15, intron 2 of 3) protein_coding-intron (ENSMUSG00000042807.15, intron 2 of 28) 128883 ENSMUSG00000102868.1 ENSMUSG00000102868 ENSMUST00000192858 Gm37633 TEC Interval_115121 chr4 91189674 91189985 + 0 NA Intergenic Intergenic 33147 ENSMUSG00000081876.1 ENSMUSG00000081876 ENSMUST00000119935 Gm12644 processed_pseudogene Interval_38169 chr12 76132589 76133785 + 0 NA intron (ENSMUSG00000021055.14, intron 8 of 9) protein_coding-intron (ENSMUSG00000021055.14, intron 7 of 8) 19440 ENSMUSG00000046580.10 ENSMUSG00000046580 ENSMUST00000121461 Gm7862 processed_pseudogene Interval_47951 chr13 94575622 94577336 + 0 NA Intergenic Intergenic -42801 ENSMUSG00000103438.1 ENSMUSG00000103438 ENSMUST00000191800 Gm36991 TEC Interval_39349 chr12 86850572 86850971 + 0 NA Intergenic Intergenic -4304 ENSMUSG00000113555.1 ENSMUSG00000113555 ENSMUST00000222765 Gm10095 processed_pseudogene Interval_16456 chr10 62979875 62981064 + 0 NA promoter-TSS (ENSMUSG00000020070.18) protein_coding-promoter-TSS (ENSMUSG00000020070.18) -959 ENSMUSG00000020070.18 ENSMUSG00000020070 ENSMUST00000143726 Rufy2 protein_coding Interval_52206 chr14 40509660 40509887 + 0 NA Intergenic Intergenic -47465 ENSMUSG00000098169.1 ENSMUSG00000098169 ENSMUST00000182253 Gm5205 processed_pseudogene Interval_87143 chr19 46426681 46426923 + 0 NA intron (ENSMUSG00000025231.17, intron 2 of 5) protein_coding-intron (ENSMUSG00000025231.17, intron 3 of 11) 25678 ENSMUSG00000025231.17 ENSMUSG00000025231 ENSMUST00000144341 Sufu protein_coding Interval_96964 chr2 130058078 130058710 + 0 NA Intergenic Intergenic -13330 ENSMUSG00000089152.1 ENSMUSG00000089152 ENSMUST00000158527 Gm22424 snoRNA Interval_72119 chr17 28149701 28150905 + 0 NA intron (ENSMUSG00000038677.14, intron 1 of 21) protein_coding-intron (ENSMUSG00000038677.14, intron 1 of 21) 7985 ENSMUSG00000038677.14 ENSMUSG00000038677 ENSMUST00000142170 Scube3 protein_coding Interval_91226 chr2 36084716 36085200 + 0 NA intron (ENSMUSG00000026890.19, intron 8 of 8) protein_coding-intron (ENSMUSG00000026890.19, intron 9 of 9) 2540 ENSMUSG00000098312.1 ENSMUSG00000098312 ENSMUST00000185171 Gm27953 misc_RNA Interval_35918 chr12 31926588 31927331 + 0 NA TTS (ENSMUSG00000035933.5) protein_coding-TTS (ENSMUSG00000035933.5) 1265 ENSMUSG00000035933.5 ENSMUSG00000035933 ENSMUST00000219837 Cog5 protein_coding Interval_114585 chr4 82745737 82746912 + 0 NA Intergenic Intergenic -40574 ENSMUSG00000008575.17 ENSMUSG00000008575 ENSMUST00000152588 Nfib protein_coding Interval_168557 chr9 83550864 83551262 + 0 NA intron (ENSMUSG00000032261.16, intron 1 of 3) protein_coding-intron (ENSMUSG00000032261.16, intron 1 of 3) 2734 ENSMUSG00000032261.16 ENSMUSG00000032261 ENSMUST00000185664 Sh3bgrl2 protein_coding Interval_124775 chr5 53866152 53866366 + 0 NA intron (ENSMUSG00000039178.9, intron 13 of 20) protein_coding-intron (ENSMUSG00000039178.9, intron 13 of 20) -24845 ENSMUSG00000039178.9 ENSMUSG00000039178 ENSMUST00000202880 Tbc1d19 protein_coding Interval_161008 chr8 116881426 116881882 + 0 NA Intergenic Intergenic 12870 ENSMUSG00000014633.15 ENSMUSG00000014633 ENSMUST00000128304 Cmc2 protein_coding Interval_132575 chr5 146410666 146411325 + 0 NA intron (ENSMUSG00000029636.11, intron 1 of 9) protein_coding-intron (ENSMUSG00000029636.11, intron 1 of 9) -44614 ENSMUSG00000029636.11 ENSMUSG00000029636 ENSMUST00000238592 Wasf3 protein_coding Interval_138343 chr6 87443474 87444509 + 0 NA Intergenic Intergenic 14997 ENSMUSG00000030046.6 ENSMUSG00000030046 ENSMUST00000032125 Bmp10 protein_coding Interval_107430 chr3 107605230 107606085 + 0 NA TTS (ENSMUSG00000014603.3) protein_coding-TTS (ENSMUSG00000014603.3) 5221 ENSMUSG00000014603.3 ENSMUSG00000014603 ENSMUST00000233202 Alx3 protein_coding Interval_83904 chr19 5473557 5475156 + 0 NA promoter-TSS (ENSMUSG00000024909.15) protein_coding-promoter-TSS (ENSMUSG00000024909.15) -568 ENSMUSG00000024909.15 ENSMUSG00000024909 ENSMUST00000168330 Efemp2 protein_coding Interval_89665 chr2 24367094 24368701 + 0 NA intron (ENSMUSG00000026979.16, intron 1 of 1) protein_coding-intron (ENSMUSG00000026979.16, intron 1 of 17) -18720 ENSMUSG00000026979.16 ENSMUSG00000026979 ENSMUST00000132924 Psd4 protein_coding Interval_129390 chr5 119685525 119687603 + 0 NA intron (ENSMUSG00000086847.1, intron 2 of 2) lincRNA-intron (ENSMUSG00000086847.1, intron 2 of 2) 4654 ENSMUSG00000086847.1 ENSMUSG00000086847 ENSMUST00000135385 Tbx3os2 lincRNA Interval_108186 chr3 122280074 122280306 + 0 NA promoter-TSS (ENSMUSG00000039756.12) protein_coding-promoter-TSS (ENSMUSG00000039756.12) 3417 ENSMUSG00000039756.12 ENSMUSG00000039756 ENSMUST00000196338 Dnttip2 protein_coding Interval_132849 chr5 148302916 148304329 + 0 NA intron (ENSMUSG00000029651.16, intron 2 of 3) protein_coding-intron (ENSMUSG00000029651.16, intron 5 of 6) 67630 ENSMUSG00000029651.16 ENSMUSG00000029651 ENSMUST00000085554 Mtus2 protein_coding Interval_169072 chr9 91476785 91477510 + 0 NA intron (ENSMUSG00000100341.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000100341.1, intron 1 of 2) 72673 ENSMUSG00000100341.1 ENSMUSG00000100341 ENSMUST00000191272 Gm29478 lincRNA Interval_138126 chr6 85353665 85354203 + 0 NA intron (ENSMUSG00000051343.11, intron 1 of 5) protein_coding-intron (ENSMUSG00000051343.11, intron 1 of 4) -12297 ENSMUSG00000051343.11 ENSMUSG00000051343 ENSMUST00000204504 Rab11fip5 protein_coding Interval_102098 chr3 17305780 17305946 + 0 NA Intergenic Intergenic 28562 ENSMUSG00000104411.1 ENSMUSG00000104411 ENSMUST00000191898 Gm30340 lincRNA Interval_91028 chr2 34530285 34530959 + 0 NA intron (ENSMUSG00000038696.14, intron 6 of 11) protein_coding-intron (ENSMUSG00000038696.14, intron 5 of 10) -34377 ENSMUSG00000081992.1 ENSMUSG00000081992 ENSMUST00000119822 Gm13408 processed_pseudogene Interval_113060 chr4 47282293 47282527 + 0 NA intron (ENSMUSG00000028339.17, intron 19 of 39) protein_coding-intron (ENSMUSG00000028339.17, intron 18 of 38) 23875 ENSMUSG00000028339.17 ENSMUSG00000028339 ENSMUST00000107730 Col15a1 protein_coding Interval_50398 chr14 12461458 12461686 + 0 NA intron (ENSMUSG00000054423.14, intron 20 of 28) protein_coding-intron (ENSMUSG00000054423.14, intron 20 of 28) -33931 ENSMUSG00000084541.1 ENSMUSG00000084541 ENSMUST00000122592 n-R5s45 rRNA Interval_167367 chr9 67846529 67847402 + 0 NA intron (ENSMUSG00000035284.10, intron 1 of 26) protein_coding-intron (ENSMUSG00000035284.10, intron 1 of 84) 6553 ENSMUSG00000035284.10 ENSMUSG00000035284 ENSMUST00000215524 Vps13c protein_coding Interval_131644 chr5 139046565 139046768 + 0 NA intron (ENSMUSG00000025855.13, intron 6 of 6) protein_coding-intron (ENSMUSG00000025855.13, intron 7 of 10) 51610 ENSMUSG00000075585.3 ENSMUSG00000075585 ENSMUST00000187923 6330403L08Rik antisense Interval_118427 chr4 131436776 131437043 + 0 NA Intergenic Intergenic -50288 ENSMUSG00000078531.3 ENSMUSG00000078531 ENSMUST00000149942 Gm831 lincRNA Interval_119003 chr4 134950530 134950787 + 0 NA Intergenic Intergenic 19756 ENSMUSG00000028821.8 ENSMUSG00000028821 ENSMUST00000144037 Syf2 protein_coding Interval_150537 chr7 112144370 112144624 + 0 NA intron (ENSMUSG00000030772.6, intron 4 of 7) protein_coding-intron (ENSMUSG00000030772.6, intron 4 of 7) 14560 ENSMUSG00000030772.6 ENSMUSG00000030772 ENSMUST00000033036 Dkk3 protein_coding Interval_14270 chr10 30181328 30181689 + 0 NA Intergenic Intergenic 1782 ENSMUSG00000110776.1 ENSMUSG00000110776 ENSMUST00000213121 Gm2829 unprocessed_pseudogene Interval_114935 chr4 87248621 87249106 + 0 NA Intergenic Intergenic -18396 ENSMUSG00000037996.17 ENSMUSG00000037996 ENSMUST00000155361 Slc24a2 protein_coding Interval_38915 chr12 83770665 83772499 + 0 NA intron (ENSMUSG00000021223.13, intron 3 of 16) protein_coding-intron (ENSMUSG00000021223.13, intron 3 of 26) 7920 ENSMUSG00000021223.13 ENSMUSG00000021223 ENSMUST00000152904 Papln protein_coding Interval_90240 chr2 29230720 29230936 + 0 NA TTS (ENSMUSG00000035513.19) protein_coding-TTS (ENSMUSG00000035513.19) 17297 ENSMUSG00000035513.19 ENSMUSG00000035513 ENSMUST00000149096 Ntng2 protein_coding Interval_41053 chr12 110834471 110834679 + 0 NA intron (ENSMUSG00000056458.16, intron 1 of 3) protein_coding-intron (ENSMUSG00000056458.16, intron 1 of 5) 6352 ENSMUSG00000056458.16 ENSMUSG00000056458 ENSMUST00000177224 Mok protein_coding Interval_126381 chr5 87689690 87690083 + 0 NA Intergenic Intergenic 6770 ENSMUSG00000063157.9 ENSMUSG00000063157 ENSMUST00000199716 Csn2 protein_coding Interval_110442 chr3 158210173 158210439 + 0 NA intron (ENSMUSG00000028176.13, intron 8 of 24) protein_coding-intron (ENSMUSG00000028176.13, intron 9 of 27) 3437 ENSMUSG00000104647.1 ENSMUSG00000104647 ENSMUST00000199292 Gm43485 TEC Interval_28089 chr11 72746692 72746914 + 0 NA intron (ENSMUSG00000020790.14, intron 10 of 24) protein_coding-intron (ENSMUSG00000020790.14, intron 8 of 22) 49038 ENSMUSG00000057778.14 ENSMUSG00000057778 ENSMUST00000169476 Cyb5d2 protein_coding Interval_1207 chr1 17105329 17105563 + 0 NA Intergenic Intergenic -19301 ENSMUSG00000100110.1 ENSMUSG00000100110 ENSMUST00000188872 Gm28783 lincRNA Interval_93527 chr2 73807407 73808448 + 0 NA Intergenic Intergenic -1235 ENSMUSG00000081062.1 ENSMUSG00000081062 ENSMUST00000118445 Gm13640 processed_pseudogene Interval_89014 chr2 14540243 14540490 + 0 NA intron (ENSMUSG00000084901.6, intron 4 of 4) processed_transcript-intron (ENSMUSG00000084901.6, intron 4 of 4) 27767 ENSMUSG00000084901.6 ENSMUSG00000084901 ENSMUST00000193364 Gm13266 processed_transcript Interval_4061 chr1 67005070 67005797 + 0 NA intron (ENSMUSG00000026000.16, intron 7 of 9) protein_coding-intron (ENSMUSG00000026000.16, intron 7 of 9) 16785 ENSMUSG00000026000.16 ENSMUSG00000026000 ENSMUST00000189210 Lancl1 protein_coding Interval_88271 chr2 3160838 3161101 + 0 NA intron (ENSMUSG00000050530.14, intron 1 of 7) protein_coding-intron (ENSMUSG00000050530.14, intron 1 of 7) 42587 ENSMUSG00000050530.14 ENSMUSG00000050530 ENSMUST00000062934 Fam171a1 protein_coding Interval_36553 chr12 49400757 49402066 + 0 NA intron (ENSMUSG00000104861.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000104861.1, intron 2 of 2) 10752 ENSMUSG00000104861.1 ENSMUSG00000104861 ENSMUST00000145291 3110039M20Rik lincRNA Interval_155606 chr8 35109853 35110593 + 0 NA Intergenic Intergenic 15678 ENSMUSG00000110130.1 ENSMUSG00000110130 ENSMUST00000211383 Gm34419 lincRNA Interval_2136 chr1 36644241 36644483 + 0 NA exon (ENSMUSG00000046337.17, exon 4 of 10) protein_coding-exon (ENSMUSG00000046337.17, exon 4 of 10) -19603 ENSMUSG00000077939.1 ENSMUSG00000077939 ENSMUST00000104746 Gm24133 miRNA Interval_146227 chr7 44848287 44850411 + 0 NA promoter-TSS (ENSMUSG00000038520.15) protein_coding-promoter-TSS (ENSMUSG00000038520.15) -350 ENSMUSG00000076051.1 ENSMUSG00000076051 ENSMUST00000102096 Mir707 miRNA Interval_125739 chr5 73698642 73698858 + 0 NA Intergenic Intergenic 39489 ENSMUSG00000029155.16 ENSMUSG00000029155 ENSMUST00000178631 Spata18 protein_coding Interval_101805 chr3 9634570 9634973 + 0 NA Intergenic Intergenic -21749 ENSMUSG00000103876.1 ENSMUSG00000103876 ENSMUST00000195844 Gm17806 processed_pseudogene Interval_41620 chr12 117053846 117054534 + 0 NA intron (ENSMUSG00000056553.14, intron 13 of 13) protein_coding-intron (ENSMUSG00000056553.14, intron 12 of 22) 97025 ENSMUSG00000099907.1 ENSMUSG00000099907 ENSMUST00000186114 Gm10421 processed_transcript Interval_99885 chr2 165601382 165602058 + 0 NA promoter-TSS (ENSMUSG00000100796.1) lincRNA-promoter-TSS (ENSMUSG00000100796.1) 67 ENSMUSG00000100796.1 ENSMUSG00000100796 ENSMUST00000187099 Gm28163 lincRNA Interval_106767 chr3 100568491 100569164 + 0 NA intron (ENSMUSG00000008763.16, intron 12 of 12) protein_coding-intron (ENSMUSG00000008763.16, intron 12 of 12) 18700 ENSMUSG00000105824.1 ENSMUSG00000105824 ENSMUST00000197836 Gm43466 sense_intronic Interval_9523 chr1 158501145 158501666 + 0 NA intron (ENSMUSG00000103971.1, intron 1 of 3) protein_coding-intron (ENSMUSG00000026587.15, intron 2 of 22) -4220 ENSMUSG00000070103.2 ENSMUSG00000070103 ENSMUST00000093595 Mir488 miRNA Interval_28393 chr11 75605034 75606518 + 0 NA intron (ENSMUSG00000017781.17, intron 5 of 11) protein_coding-intron (ENSMUSG00000017781.17, intron 4 of 9) -5822 ENSMUSG00000081485.5 ENSMUSG00000081485 ENSMUST00000122170 Gm12338 processed_pseudogene Interval_98446 chr2 152410914 152411626 + 0 NA TTS (ENSMUSG00000074682.4) protein_coding-TTS (ENSMUSG00000074682.4) 3757 ENSMUSG00000074682.4 ENSMUSG00000074682 ENSMUST00000099207 Zcchc3 protein_coding Interval_108123 chr3 121692523 121693898 + 0 NA Intergenic Intergenic 17036 ENSMUSG00000106036.1 ENSMUSG00000106036 ENSMUST00000197703 Gm43608 lincRNA Interval_98136 chr2 148680785 148681708 + 0 NA promoter-TSS (ENSMUSG00000027439.9) protein_coding-promoter-TSS (ENSMUSG00000027439.9) -3366 ENSMUSG00000027439.9 ENSMUSG00000027439 ENSMUST00000151362 Gzf1 protein_coding Interval_87521 chr19 53219601 53219889 + 0 NA intron (ENSMUSG00000025026.15, intron 3 of 14) protein_coding-intron (ENSMUSG00000025026.15, intron 3 of 15) 35445 ENSMUSG00000118314.1 ENSMUSG00000118314 ENSMUST00000237379 1700001K23Rik lincRNA Interval_51415 chr14 27360376 27360691 + 0 NA promoter-TSS (ENSMUSG00000021895.10) protein_coding-promoter-TSS (ENSMUSG00000021895.10) 20317 ENSMUSG00000093034.1 ENSMUSG00000093034 ENSMUST00000175293 Gm23633 miRNA Interval_145618 chr7 36075985 36076531 + 0 NA Intergenic Intergenic -21120 ENSMUSG00000108711.1 ENSMUSG00000108711 ENSMUST00000205504 Gm38991 lincRNA Interval_6015 chr1 93979183 93979367 + 0 NA intron (ENSMUSG00000099624.1, intron 3 of 5) unprocessed_pseudogene-intron (ENSMUSG00000099624.1, intron 3 of 5) 3922 ENSMUSG00000099624.1 ENSMUSG00000099624 ENSMUST00000185591 Gm7889 unprocessed_pseudogene Interval_144523 chr7 25674585 25675639 + 0 NA promoter-TSS (ENSMUSG00000061702.10) protein_coding-promoter-TSS (ENSMUSG00000061702.10) -1639 ENSMUSG00000061702.10 ENSMUSG00000061702 ENSMUST00000126983 Tmem91 protein_coding Interval_117784 chr4 126214569 126214955 + 0 NA Intergenic Intergenic -13485 ENSMUSG00000084504.1 ENSMUSG00000084504 ENSMUST00000122555 Gm25323 snRNA Interval_46909 chr13 73333457 73334196 + 0 NA Intergenic Intergenic 2800 ENSMUSG00000021607.9 ENSMUSG00000021607 ENSMUST00000222030 Mrpl36 protein_coding Interval_153035 chr7 140996459 140996707 + 0 NA Intergenic Intergenic -3070 ENSMUSG00000110355.1 ENSMUSG00000110355 ENSMUST00000209475 Gm7514 processed_pseudogene Interval_8138 chr1 135958451 135959022 + 0 NA intron (ENSMUSG00000051985.12, intron 23 of 26) protein_coding-intron (ENSMUSG00000051985.12, intron 18 of 20) -39594 ENSMUSG00000026413.12 ENSMUSG00000026413 ENSMUST00000132793 Pkp1 protein_coding Interval_58481 chr15 35017201 35017401 + 0 NA intron (ENSMUSG00000022329.15, intron 6 of 10) protein_coding-intron (ENSMUSG00000022329.15, intron 6 of 10) -57064 ENSMUSG00000022329.15 ENSMUSG00000022329 ENSMUST00000138841 Stk3 protein_coding Interval_97890 chr2 144907129 144907360 + 0 NA Intergenic Intergenic 24434 ENSMUSG00000082858.1 ENSMUSG00000082858 ENSMUST00000119843 Gm11746 processed_pseudogene Interval_107670 chr3 109936554 109937051 + 0 NA intron (ENSMUSG00000059857.15, intron 1 of 4) protein_coding-intron (ENSMUSG00000059857.15, intron 1 of 6) 29418 ENSMUSG00000082624.1 ENSMUSG00000082624 ENSMUST00000121025 Gm12535 processed_pseudogene Interval_142269 chr6 140289305 140290850 + 0 NA Intergenic Intergenic 6379 ENSMUSG00000107572.1 ENSMUSG00000107572 ENSMUST00000204425 Gm3961 TEC Interval_77069 chr17 86203605 86204261 + 0 NA intron (ENSMUSG00000045038.14, intron 1 of 14) protein_coding-intron (ENSMUSG00000045038.14, intron 2 of 15) 28358 ENSMUSG00000117546.1 ENSMUSG00000117546 ENSMUST00000234087 AC154542.1 TEC Interval_72046 chr17 27707828 27708538 + 0 NA TTS (ENSMUSG00000040276.15) protein_coding-TTS (ENSMUSG00000040276.15) 10166 ENSMUSG00000024215.14 ENSMUSG00000024215 ENSMUST00000138970 Spdef protein_coding Interval_144926 chr7 28945253 28946804 + 0 NA intron (ENSMUSG00000054808.15, intron 1 of 21) protein_coding-intron (ENSMUSG00000054808.15, intron 1 of 20) -2500 ENSMUSG00000109314.1 ENSMUSG00000109314 ENSMUST00000208229 Gm44699 sense_intronic Interval_8270 chr1 136866690 136867196 + 0 NA intron (ENSMUSG00000026398.14, intron 8 of 8) protein_coding-intron (ENSMUSG00000026398.14, intron 8 of 8) -67984 ENSMUSG00000104261.1 ENSMUSG00000104261 ENSMUST00000195232 Gm17781 processed_pseudogene Interval_153955 chr8 11476336 11477226 + 0 NA intron (ENSMUSG00000031504.6, intron 1 of 1) protein_coding-intron (ENSMUSG00000031504.6, intron 1 of 1) -1148 ENSMUSG00000096957.1 ENSMUSG00000096957 ENSMUST00000180408 E230013L22Rik bidirectional_promoter_lncRNA Interval_4708 chr1 77468640 77469327 + 0 NA intron (ENSMUSG00000026235.14, intron 2 of 15) protein_coding-intron (ENSMUSG00000026235.14, intron 3 of 17) 27785 ENSMUSG00000099141.1 ENSMUSG00000099141 ENSMUST00000184495 Mir6352 miRNA Interval_120236 chr4 144652269 144653534 + 0 NA Intergenic Intergenic 33467 ENSMUSG00000078505.1 ENSMUSG00000078505 ENSMUST00000105747 Aadacl4fm4 protein_coding Interval_108827 chr3 132066812 132067382 + 0 NA Intergenic Intergenic 15295 ENSMUSG00000064992.1 ENSMUSG00000064992 ENSMUST00000083058 Gm22421 snRNA Interval_144637 chr7 27273623 27274404 + 0 NA exon (ENSMUSG00000063160.12, exon 7 of 10) protein_coding-exon (ENSMUSG00000063160.12, exon 7 of 10) -1621 ENSMUSG00000083622.1 ENSMUSG00000083622 ENSMUST00000122093 Gm15570 processed_pseudogene Interval_57607 chr15 12795325 12796481 + 0 NA Intergenic Intergenic 9270 ENSMUSG00000115024.1 ENSMUSG00000115024 ENSMUST00000228527 Gm49277 processed_pseudogene Interval_39990 chr12 100289940 100291511 + 0 NA intron (ENSMUSG00000113679.1, intron 2 of 3) processed_transcript-intron (ENSMUSG00000113679.1, intron 1 of 3) 469 ENSMUSG00000113679.1 ENSMUSG00000113679 ENSMUST00000220721 Gm10432 processed_transcript Interval_152109 chr7 129444105 129444717 + 0 NA Intergenic Intergenic -41321 ENSMUSG00000108713.1 ENSMUSG00000108713 ENSMUST00000206093 Gm33027 lincRNA Interval_4161 chr1 71047082 71047316 + 0 NA intron (ENSMUSG00000026196.7, intron 8 of 10) protein_coding-intron (ENSMUSG00000026196.7, intron 8 of 10) -7169 ENSMUSG00000089965.1 ENSMUSG00000089965 ENSMUST00000159588 Gm16236 processed_pseudogene Interval_164510 chr9 37576537 37576953 + 0 NA intron (ENSMUSG00000001942.8, intron 2 of 10) protein_coding-intron (ENSMUSG00000001942.8, intron 2 of 10) -30607 ENSMUSG00000053310.11 ENSMUSG00000053310 ENSMUST00000182070 Nrgn protein_coding Interval_5849 chr1 92521219 92521888 + 0 NA Intergenic Intergenic -3134 ENSMUSG00000042849.11 ENSMUSG00000042849 ENSMUST00000189174 Olfr1414 protein_coding Interval_149405 chr7 98169761 98171730 + 0 NA intron (ENSMUSG00000035547.14, intron 1 of 12) protein_coding-intron (ENSMUSG00000035547.14, intron 1 of 12) -5783 ENSMUSG00000035547.14 ENSMUSG00000035547 ENSMUST00000129430 Capn5 protein_coding Interval_154901 chr8 24938513 24940250 + 0 NA TTS (ENSMUSG00000088736.1) snRNA-TTS (ENSMUSG00000088736.1) 1081 ENSMUSG00000088736.1 ENSMUSG00000088736 ENSMUST00000158111 Gm23898 snRNA Interval_155729 chr8 36547509 36550985 + 0 NA Intergenic Intergenic 60056 ENSMUSG00000039620.17 ENSMUSG00000039620 ENSMUST00000125492 Trmt9b protein_coding Interval_148812 chr7 88401056 88401285 + 0 NA Intergenic Intergenic -29224 ENSMUSG00000030559.8 ENSMUSG00000030559 ENSMUST00000208478 Rab38 protein_coding Interval_21937 chr11 5296572 5297193 + 0 NA intron (ENSMUSG00000041961.14, intron 3 of 8) protein_coding-intron (ENSMUSG00000041961.14, intron 2 of 8) 22797 ENSMUSG00000118486.1 ENSMUSG00000118486 ENSMUST00000238466 Gm30172 unitary_pseudogene Interval_135833 chr6 47790772 47791719 + 0 NA Intergenic Intergenic -3065 ENSMUSG00000065701.1 ENSMUSG00000065701 ENSMUST00000083767 Rny1 misc_RNA Interval_123820 chr5 35746912 35747245 + 0 NA Intergenic Intergenic -7091 ENSMUSG00000036553.16 ENSMUSG00000036553 ENSMUST00000154118 Sh3tc1 protein_coding Interval_87877 chr19 56785314 56785690 + 0 NA Intergenic Intergenic 15484 ENSMUSG00000035173.14 ENSMUSG00000035173 ENSMUST00000140184 Ccdc186 protein_coding Interval_2612 chr1 42230116 42231285 + 0 NA exon (ENSMUSG00000053640.2, exon 1 of 1) lincRNA-exon (ENSMUSG00000053640.2, exon 1 of 1) 973 ENSMUSG00000053640.2 ENSMUSG00000053640 ENSMUST00000188087 Gm9915 lincRNA Interval_117548 chr4 124621403 124622091 + 0 NA intron (ENSMUSG00000098760.1, intron 1 of 1) antisense-intron (ENSMUSG00000098760.1, intron 1 of 1) -35060 ENSMUSG00000090125.3 ENSMUSG00000090125 ENSMUST00000053491 Pou3f1 protein_coding Interval_93290 chr2 71718058 71719899 + 0 NA promoter-TSS (ENSMUSG00000064263.6) lincRNA-promoter-TSS (ENSMUSG00000064263.6) -439 ENSMUSG00000064263.6 ENSMUSG00000064263 ENSMUST00000079720 Platr26 lincRNA Interval_65774 chr16 28751804 28752037 + 0 NA intron (ENSMUSG00000022523.10, intron 1 of 4) protein_coding-intron (ENSMUSG00000022523.10, intron 1 of 4) 84447 ENSMUSG00000051065.9 ENSMUSG00000051065 ENSMUST00000232571 Mb21d2 protein_coding Interval_31847 chr11 103326734 103327391 + 0 NA Intergenic Intergenic 6333 ENSMUSG00000034255.17 ENSMUSG00000034255 ENSMUST00000092557 Arhgap27 protein_coding Interval_19679 chr10 107804885 107805686 + 0 NA intron (ENSMUSG00000091455.4, intron 33 of 57) protein_coding-intron (ENSMUSG00000091455.4, intron 33 of 57) -85258 ENSMUSG00000035916.8 ENSMUSG00000035916 ENSMUST00000218399 Ptprq protein_coding Interval_116938 chr4 118324876 118325122 + 0 NA Intergenic Intergenic -33725 ENSMUSG00000033295.14 ENSMUSG00000033295 ENSMUST00000222620 Ptprf protein_coding Interval_129936 chr5 123156853 123158833 + 0 NA exon (ENSMUSG00000038384.16, exon 9 of 16) protein_coding-exon (ENSMUSG00000038384.16, exon 9 of 16) 15650 ENSMUSG00000038384.16 ENSMUSG00000038384 ENSMUST00000162839 Setd1b protein_coding Interval_123014 chr5 28453504 28453886 + 0 NA Intergenic Intergenic -13289 ENSMUSG00000097726.7 ENSMUSG00000097726 ENSMUST00000181202 9530036O11Rik antisense Interval_113464 chr4 55175954 55176207 + 0 NA intron (ENSMUSG00000087614.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000087614.1, intron 1 of 2) 13072 ENSMUSG00000081177.1 ENSMUSG00000081177 ENSMUST00000118033 Gm12509 processed_pseudogene Interval_71607 chr17 24827154 24827372 + 0 NA intron (ENSMUSG00000024155.8, intron 6 of 13) protein_coding-intron (ENSMUSG00000024155.8, intron 6 of 13) 22904 ENSMUSG00000024155.8 ENSMUSG00000024155 ENSMUST00000234455 Meiob protein_coding Interval_63231 chr15 99845796 99846012 + 0 NA intron (ENSMUSG00000023022.14, intron 1 of 1) protein_coding-intron (ENSMUSG00000023022.14, intron 1 of 10) 26884 ENSMUSG00000090500.1 ENSMUSG00000090500 ENSMUST00000169887 Gm17057 antisense Interval_122549 chr5 23753474 23753770 + 0 NA intron (ENSMUSG00000057541.14, intron 1 of 2) protein_coding-intron (ENSMUSG00000057541.14, intron 8 of 15) 22046 ENSMUSG00000057541.14 ENSMUSG00000057541 ENSMUST00000195909 Pus7 protein_coding Interval_139855 chr6 111487809 111488624 + 0 NA intron (ENSMUSG00000056755.13, intron 9 of 9) protein_coding-intron (ENSMUSG00000056755.13, intron 8 of 10) -7528 ENSMUSG00000056755.13 ENSMUSG00000056755 ENSMUST00000174310 Grm7 protein_coding Interval_30762 chr11 96325634 96327206 + 0 NA intron (ENSMUSG00000048763.11, intron 1 of 3) protein_coding-intron (ENSMUSG00000048763.11, intron 1 of 3) 8153 ENSMUSG00000038692.8 ENSMUSG00000038692 ENSMUST00000049241 Hoxb4 protein_coding Interval_18905 chr10 93000741 93000985 + 0 NA intron (ENSMUSG00000020014.17, intron 23 of 67) protein_coding-intron (ENSMUSG00000020014.17, intron 23 of 66) 32099 ENSMUSG00000020014.17 ENSMUSG00000020014 ENSMUST00000171781 Cfap54 protein_coding Interval_136912 chr6 64357452 64358301 + 0 NA intron (ENSMUSG00000071424.10, intron 11 of 15) protein_coding-intron (ENSMUSG00000071424.10, intron 11 of 15) -55772 ENSMUSG00000064775.1 ENSMUSG00000064775 ENSMUST00000082841 Gm25205 snRNA Interval_152858 chr7 138856264 138857524 + 0 NA intron (ENSMUSG00000041769.13, intron 3 of 4) protein_coding-intron (ENSMUSG00000041769.13, intron 2 of 8) -3943 ENSMUSG00000041769.13 ENSMUSG00000041769 ENSMUST00000172764 Ppp2r2d protein_coding Interval_68165 chr16 66139816 66140225 + 0 NA Intergenic Intergenic -114766 ENSMUSG00000095506.1 ENSMUSG00000095506 ENSMUST00000179254 Gm22448 snRNA Interval_104272 chr3 62463571 62464982 + 0 NA Intergenic Intergenic 37096 ENSMUSG00000036885.14 ENSMUSG00000036885 ENSMUST00000192138 Arhgef26 protein_coding Interval_57351 chr15 9435430 9436782 + 0 NA promoter-TSS (ENSMUSG00000039676.4) protein_coding-promoter-TSS (ENSMUSG00000039676.4) 78 ENSMUSG00000039676.4 ENSMUSG00000039676 ENSMUST00000226688 Capsl protein_coding Interval_68171 chr16 66585546 66586157 + 0 NA Intergenic Intergenic -71267 ENSMUSG00000092599.1 ENSMUSG00000092599 ENSMUST00000174502 1700010K23Rik antisense Interval_8002 chr1 135167119 135167626 + 0 NA exon (ENSMUSG00000026424.8, exon 1 of 2) protein_coding-exon (ENSMUSG00000026424.8, exon 1 of 2) 309 ENSMUSG00000026424.8 ENSMUSG00000026424 ENSMUST00000027682 Gpr37l1 protein_coding Interval_53451 chr14 57604173 57604578 + 0 NA exon (ENSMUSG00000021952.16, exon 11 of 23) protein_coding-exon (ENSMUSG00000021952.16, exon 11 of 23) 32761 ENSMUSG00000097933.2 ENSMUSG00000097933 ENSMUST00000180397 1700039M10Rik bidirectional_promoter_lncRNA Interval_104337 chr3 63609648 63610781 + 0 NA Intergenic Intergenic 121221 ENSMUSG00000088957.1 ENSMUSG00000088957 ENSMUST00000158332 Gm24946 snRNA Interval_57808 chr15 21119153 21119378 + 0 NA intron (ENSMUSG00000040452.9, intron 2 of 12) protein_coding-intron (ENSMUSG00000040452.9, intron 1 of 11) 4896 ENSMUSG00000095678.1 ENSMUSG00000095678 ENSMUST00000179057 Gm25101 snRNA Interval_222 KV575235.1 63389 64167 + 0 NA NA NA NA NA Interval_32756 chr11 110369427 110369988 + 0 NA Intergenic Intergenic -31991 ENSMUSG00000018800.14 ENSMUSG00000018800 ENSMUST00000148984 Abca5 protein_coding Interval_55052 chr14 77518156 77520614 + 0 NA intron (ENSMUSG00000022012.9, intron 6 of 6) protein_coding-intron (ENSMUSG00000022012.9, intron 7 of 18) -11013 ENSMUSG00000084431.1 ENSMUSG00000084431 ENSMUST00000122482 n-R5s48 rRNA Interval_160232 chr8 107300451 107301214 + 0 NA intron (ENSMUSG00000003847.16, intron 2 of 14) protein_coding-intron (ENSMUSG00000003847.16, intron 1 of 12) 7362 ENSMUSG00000003847.16 ENSMUSG00000003847 ENSMUST00000147588 Nfat5 protein_coding Interval_35828 chr12 30883506 30885349 + 0 NA exon (ENSMUSG00000054204.6, exon 1 of 5) protein_coding-exon (ENSMUSG00000054204.6, exon 1 of 5) 105 ENSMUSG00000054204.6 ENSMUSG00000054204 ENSMUST00000067087 Alkal2 protein_coding Interval_15785 chr10 56509915 56510354 + 0 NA Intergenic Intergenic 12793 ENSMUSG00000112825.1 ENSMUSG00000112825 ENSMUST00000219246 Gm9118 processed_pseudogene Interval_50215 chr14 10262010 10262231 + 0 NA intron (ENSMUSG00000060579.13, intron 1 of 5) protein_coding-intron (ENSMUSG00000060579.13, intron 5 of 9) 83500 ENSMUSG00000114391.1 ENSMUSG00000114391 ENSMUST00000225711 Gm48439 antisense Interval_115692 chr4 102261454 102262193 + 0 NA intron (ENSMUSG00000028525.16, intron 1 of 14) protein_coding-intron (ENSMUSG00000028525.16, intron 1 of 5) 6593 ENSMUSG00000028525.16 ENSMUSG00000028525 ENSMUST00000106901 Pde4b protein_coding Interval_82340 chr18 71211719 71212041 + 0 NA Intergenic Intergenic -304229 ENSMUSG00000118271.1 ENSMUSG00000118271 ENSMUST00000236972 Gm50262 processed_pseudogene Interval_76496 chr17 80599217 80600245 + 0 NA intron (ENSMUSG00000024242.15, intron 13 of 18) protein_coding-intron (ENSMUSG00000024242.15, intron 28 of 33) -21918 ENSMUSG00000033966.8 ENSMUSG00000033966 ENSMUST00000234349 Cdkl4 protein_coding Interval_138405 chr6 87913071 87914703 + 0 NA promoter-TSS (ENSMUSG00000030060.14) protein_coding-promoter-TSS (ENSMUSG00000030060.14) -63 ENSMUSG00000030060.14 ENSMUSG00000030060 ENSMUST00000148914 Hmces protein_coding Interval_163525 chr9 21862113 21862496 + 0 NA Intergenic Intergenic -9686 ENSMUSG00000032198.9 ENSMUSG00000032198 ENSMUST00000213775 Dock6 protein_coding Interval_55166 chr14 78860941 78861861 + 0 NA intron (ENSMUSG00000058997.8, intron 1 of 12) protein_coding-intron (ENSMUSG00000058997.8, intron 1 of 44) -30131 ENSMUSG00000115290.1 ENSMUSG00000115290 ENSMUST00000226127 Gm19098 processed_pseudogene Interval_54651 chr14 72845252 72848519 + 0 NA intron (ENSMUSG00000115611.1, intron 1 of 1) transcribed_processed_pseudogene-intron (ENSMUSG00000115611.1, intron 1 of 1) -5641 ENSMUSG00000115611.1 ENSMUSG00000115611 ENSMUST00000228906 Gm4606 transcribed_processed_pseudogene Interval_26712 chr11 59908333 59909259 + 0 NA Intergenic Intergenic 10422 ENSMUSG00000084766.1 ENSMUSG00000084766 ENSMUST00000143391 Gm12714 lincRNA Interval_86860 chr19 44426610 44428319 + 0 NA intron (ENSMUSG00000118076.1, intron 3 of 3) lincRNA-intron (ENSMUSG00000118076.1, intron 3 of 3) 7854 ENSMUSG00000118076.1 ENSMUSG00000118076 ENSMUST00000237516 Gm50337 lincRNA Interval_15111 chr10 42636867 42637514 + 0 NA intron (ENSMUSG00000038280.12, intron 2 of 6) protein_coding-intron (ENSMUSG00000038280.12, intron 2 of 5) -41776 ENSMUSG00000038280.12 ENSMUSG00000038280 ENSMUST00000154048 Ostm1 protein_coding Interval_56953 chr14 123994245 123994714 + 0 NA intron (ENSMUSG00000099994.1, intron 1 of 3) protein_coding-intron (ENSMUSG00000025551.13, intron 3 of 4) 6844 ENSMUSG00000099994.1 ENSMUSG00000099994 ENSMUST00000190088 1700024B18Rik antisense Interval_55227 chr14 79507970 79508465 + 0 NA intron (ENSMUSG00000036461.16, intron 1 of 8) protein_coding-intron (ENSMUSG00000036461.16, intron 1 of 8) -7469 ENSMUSG00000036461.16 ENSMUSG00000036461 ENSMUST00000227104 Elf1 protein_coding Interval_26313 chr11 56040490 56041308 + 0 NA exon (ENSMUSG00000037393.2, exon 1 of 4) protein_coding-exon (ENSMUSG00000037393.2, exon 1 of 4) 111 ENSMUSG00000037393.2 ENSMUSG00000037393 ENSMUST00000037682 Nmur2 protein_coding Interval_169913 chr9 102917721 102917948 + 0 NA Intergenic Intergenic 19279 ENSMUSG00000032547.12 ENSMUSG00000032547 ENSMUST00000177274 Ryk protein_coding Interval_22509 chr11 11250858 11251043 + 0 NA intron (ENSMUSG00000050830.17, intron 3 of 4) protein_coding-intron (ENSMUSG00000050830.17, intron 2 of 3) -61483 ENSMUSG00000082875.1 ENSMUSG00000082875 ENSMUST00000117333 Gm12598 processed_pseudogene Interval_145827 chr7 39693777 39694196 + 0 NA Intergenic Intergenic -30977 ENSMUSG00000100912.1 ENSMUSG00000100912 ENSMUST00000190623 Gm2021 processed_pseudogene Interval_137988 chr6 83992945 83993378 + 0 NA Intergenic Intergenic 18960 ENSMUSG00000107682.1 ENSMUSG00000107682 ENSMUST00000203143 Gm33024 antisense Interval_129624 chr5 121405078 121405580 + 0 NA TTS (ENSMUSG00000106115.1) TEC-TTS (ENSMUSG00000106115.1) 2671 ENSMUSG00000106115.1 ENSMUSG00000106115 ENSMUST00000198012 Gm43420 TEC Interval_149559 chr7 99565431 99565742 + 0 NA intron (ENSMUSG00000018909.15, intron 1 of 4) protein_coding-intron (ENSMUSG00000018909.15, intron 1 of 14) 5254 ENSMUSG00000108850.1 ENSMUSG00000108850 ENSMUST00000207191 Gm44914 TEC Interval_149827 chr7 101843616 101843860 + 0 NA TTS (ENSMUSG00000073985.2) antisense-TTS (ENSMUSG00000073985.2) -2562 ENSMUSG00000032725.10 ENSMUSG00000032725 ENSMUST00000211566 Folr2 protein_coding Interval_6433 chr1 108537202 108537811 + 0 NA Intergenic Intergenic 75008 ENSMUSG00000101231.1 ENSMUSG00000101231 ENSMUST00000185509 Gm28283 processed_pseudogene Interval_111940 chr4 32699653 32699934 + 0 NA intron (ENSMUSG00000058006.12, intron 29 of 101) protein_coding-intron (ENSMUSG00000058006.12, intron 29 of 101) 42674 ENSMUSG00000058006.12 ENSMUSG00000058006 ENSMUST00000124361 Mdn1 protein_coding Interval_152204 chr7 130634227 130634654 + 0 NA intron (ENSMUSG00000030852.18, intron 4 of 6) protein_coding-intron (ENSMUSG00000030852.18, intron 2 of 20) 19952 ENSMUSG00000109225.1 ENSMUSG00000109225 ENSMUST00000207466 4930513N20Rik TEC Interval_113864 chr4 59431208 59431718 + 0 NA intron (ENSMUSG00000038578.15, intron 1 of 16) protein_coding-intron (ENSMUSG00000038578.15, intron 1 of 16) -62597 ENSMUSG00000083979.1 ENSMUSG00000083979 ENSMUST00000117967 Gm12527 processed_pseudogene Interval_159791 chr8 103588266 103588959 + 0 NA Intergenic Intergenic -15187 ENSMUSG00000110336.1 ENSMUSG00000110336 ENSMUST00000211119 4933400L20Rik lincRNA Interval_59943 chr15 62128575 62128923 + 0 NA intron (ENSMUSG00000097039.8, intron 2 of 6) lincRNA-intron (ENSMUSG00000097039.8, intron 2 of 8) 21562 ENSMUSG00000099295.1 ENSMUSG00000099295 ENSMUST00000183721 Gm27718 misc_RNA Interval_59985 chr15 62770166 62771981 + 0 NA intron (ENSMUSG00000115862.1, intron 3 of 3) lincRNA-intron (ENSMUSG00000115862.1, intron 3 of 3) -22128 ENSMUSG00000088897.1 ENSMUSG00000088897 ENSMUST00000158272 Gm22521 snoRNA Interval_67701 chr16 56066025 56066255 + 0 NA intron (ENSMUSG00000052917.15, intron 3 of 5) protein_coding-intron (ENSMUSG00000052917.15, intron 3 of 5) -4423 ENSMUSG00000076360.1 ENSMUSG00000076360 ENSMUST00000102405 Gm24047 miRNA Interval_12021 chr1 188896951 188897340 + 0 NA intron (ENSMUSG00000026609.15, intron 60 of 70) protein_coding-intron (ENSMUSG00000026609.15, intron 60 of 70) 110696 ENSMUSG00000026608.13 ENSMUSG00000026608 ENSMUST00000193273 Kctd3 protein_coding Interval_150499 chr7 111249762 111250089 + 0 NA Intergenic Intergenic -116373 ENSMUSG00000109808.1 ENSMUSG00000109808 ENSMUST00000211799 5430402P08Rik lincRNA Interval_37670 chr12 70995669 70995935 + 0 NA TTS (ENSMUSG00000060073.9) protein_coding-TTS (ENSMUSG00000060073.9) 19793 ENSMUSG00000085622.9 ENSMUSG00000085622 ENSMUST00000222159 3110056K07Rik processed_transcript Interval_151321 chr7 121008246 121008825 + 0 NA intron (ENSMUSG00000030877.11, intron 3 of 3) protein_coding-intron (ENSMUSG00000030877.11, intron 7 of 7) 7098 ENSMUSG00000058050.5 ENSMUSG00000058050 ENSMUST00000077747 Gm9234 processed_pseudogene Interval_857 chr1 12724277 12725149 + 0 NA intron (ENSMUSG00000016918.15, intron 1 of 3) protein_coding-intron (ENSMUSG00000016918.15, intron 1 of 21) 5249 ENSMUSG00000016918.15 ENSMUSG00000016918 ENSMUST00000185780 Sulf1 protein_coding Interval_44424 chr13 44764006 44765398 + 0 NA intron (ENSMUSG00000038518.15, intron 2 of 4) protein_coding-intron (ENSMUSG00000038518.15, intron 2 of 18) 33332 ENSMUSG00000038518.15 ENSMUSG00000038518 ENSMUST00000173003 Jarid2 protein_coding Interval_83366 chr18 84625240 84625573 + 0 NA promoter-TSS (ENSMUSG00000117676.1) antisense-promoter-TSS (ENSMUSG00000117676.1) -339 ENSMUSG00000117676.1 ENSMUSG00000117676 ENSMUST00000236074 Gm50314 antisense Interval_64405 chr16 11174899 11176926 + 0 NA promoter-TSS (ENSMUSG00000037965.14) protein_coding-promoter-TSS (ENSMUSG00000037965.14) -2264 ENSMUSG00000096959.1 ENSMUSG00000096959 ENSMUST00000181206 4930509G22Rik lincRNA Interval_19093 chr10 94461506 94462109 + 0 NA intron (ENSMUSG00000020023.18, intron 2 of 2) protein_coding-intron (ENSMUSG00000020023.18, intron 2 of 2) 52916 ENSMUSG00000085409.1 ENSMUSG00000085409 ENSMUST00000155180 Gm16155 sense_intronic Interval_63520 chr15 101704026 101704867 + 0 NA Intergenic Intergenic -5828 ENSMUSG00000105682.1 ENSMUSG00000105682 ENSMUST00000198689 Gm44323 miRNA Interval_133367 chr6 3967808 3968826 + 0 NA promoter-TSS (ENSMUSG00000029664.10) protein_coding-promoter-TSS (ENSMUSG00000029664.10) 20541 ENSMUSG00000029664.10 ENSMUSG00000029664 ENSMUST00000183682 Tfpi2 protein_coding Interval_15597 chr10 52216642 52218222 + 0 NA Intergenic Intergenic -16205 ENSMUSG00000019891.15 ENSMUSG00000019891 ENSMUST00000218582 Dcbld1 protein_coding Interval_170024 chr9 103724467 103724717 + 0 NA intron (ENSMUSG00000042757.16, intron 2 of 3) protein_coding-intron (ENSMUSG00000042757.16, intron 2 of 5) 37237 ENSMUSG00000042757.16 ENSMUSG00000042757 ENSMUST00000186455 Tmem108 protein_coding Interval_169177 chr9 95197141 95198146 + 0 NA intron (ENSMUSG00000031129.9, intron 14 of 15) protein_coding-intron (ENSMUSG00000031129.9, intron 14 of 15) -204959 ENSMUSG00000111087.1 ENSMUSG00000111087 ENSMUST00000214362 Gm47168 processed_pseudogene Interval_28354 chr11 75341440 75341782 + 0 NA TTS (ENSMUSG00000000751.13) protein_coding-TTS (ENSMUSG00000000751.13) 6684 ENSMUSG00000000751.13 ENSMUSG00000000751 ENSMUST00000149365 Rpa1 protein_coding Interval_154865 chr8 24489763 24491458 + 0 NA Intergenic Intergenic -15820 ENSMUSG00000109237.1 ENSMUSG00000109237 ENSMUST00000208727 9130214F15Rik TEC Interval_173443 chrX 93831580 93832778 + 0 NA promoter-TSS (ENSMUSG00000035232.8) protein_coding-promoter-TSS (ENSMUSG00000035232.8) -63059 ENSMUSG00000035232.8 ENSMUSG00000035232 ENSMUST00000134502 Pdk3 protein_coding Interval_153827 chr8 9233019 9233782 + 0 NA intron (ENSMUSG00000079157.4, intron 1 of 3) protein_coding-intron (ENSMUSG00000079157.4, intron 1 of 2) -15990 ENSMUSG00000109040.1 ENSMUSG00000109040 ENSMUST00000208677 Gm44542 TEC Interval_59673 chr15 57810971 57811256 + 0 NA intron (ENSMUSG00000071757.10, intron 2 of 2) protein_coding-intron (ENSMUSG00000071757.10, intron 2 of 3) -72447 ENSMUSG00000047807.10 ENSMUSG00000047807 ENSMUST00000176703 9330154K18Rik antisense Interval_76340 chr17 79206734 79207152 + 0 NA Intergenic Intergenic 51106 ENSMUSG00000117047.1 ENSMUSG00000117047 ENSMUST00000232946 Gm5230 processed_pseudogene Interval_5704 chr1 91068078 91068871 + 0 NA intron (ENSMUSG00000026305.15, intron 1 of 24) protein_coding-intron (ENSMUSG00000026305.15, intron 1 of 12) 14888 ENSMUSG00000026305.15 ENSMUSG00000026305 ENSMUST00000187532 Lrrfip1 protein_coding Interval_75808 chr17 71539161 71539371 + 0 NA intron (ENSMUSG00000079356.10, intron 4 of 5) transcribed_unprocessed_pseudogene-intron (ENSMUSG00000079356.10, intron 4 of 6) 12370 ENSMUSG00000079356.10 ENSMUSG00000079356 ENSMUST00000127676 Mettl4-ps1 transcribed_unprocessed_pseudogene Interval_25038 chr11 43437374 43437611 + 0 NA exon (ENSMUSG00000020409.10, exon 2 of 16) protein_coding-exon (ENSMUSG00000020409.10, exon 2 of 16) 149 ENSMUSG00000020409.10 ENSMUSG00000020409 ENSMUST00000136541 Slu7 protein_coding Interval_54648 chr14 72782908 72783524 + 0 NA Intergenic Intergenic -6137 ENSMUSG00000115532.1 ENSMUSG00000115532 ENSMUST00000227565 Gm41206 lincRNA Interval_100592 chr2 170308509 170309626 + 0 NA Intergenic Intergenic 24032 ENSMUSG00000084013.1 ENSMUSG00000084013 ENSMUST00000118388 Gm14270 processed_pseudogene Interval_93013 chr2 69591870 69593348 + 0 NA Intergenic Intergenic -54621 ENSMUSG00000063145.10 ENSMUSG00000063145 ENSMUST00000127806 Bbs5 protein_coding Interval_28700 chr11 77821490 77823190 + 0 NA intron (ENSMUSG00000000631.20, intron 11 of 41) protein_coding-intron (ENSMUSG00000000631.20, intron 9 of 39) 20990 ENSMUSG00000000631.20 ENSMUSG00000000631 ENSMUST00000142571 Myo18a protein_coding Interval_137675 chr6 78840314 78841995 + 0 NA Intergenic Intergenic -70013 ENSMUSG00000094980.1 ENSMUSG00000094980 ENSMUST00000083352 Gm23727 snRNA Interval_25855 chr11 52166103 52168623 + 0 NA exon (ENSMUSG00000108218.2, exon 1 of 3) transcribed_unprocessed_pseudogene-exon (ENSMUSG00000108218.2, exon 1 of 3) 796 ENSMUSG00000108218.2 ENSMUSG00000108218 ENSMUST00000121007 Olfr1372-ps1 transcribed_unprocessed_pseudogene Interval_61955 chr15 85470873 85471250 + 0 NA Intergenic Intergenic 32166 ENSMUSG00000096607.1 ENSMUSG00000096607 ENSMUST00000178942 7530416G11Rik protein_coding Interval_93833 chr2 77313168 77314602 + 0 NA promoter-TSS (ENSMUSG00000085277.1) lincRNA-promoter-TSS (ENSMUSG00000085277.1) -866 ENSMUSG00000085277.1 ENSMUSG00000085277 ENSMUST00000144043 Gm13943 lincRNA Interval_99697 chr2 164372320 164372826 + 0 NA intron (ENSMUSG00000017002.14, intron 1 of 2) protein_coding-intron (ENSMUSG00000017002.14, intron 1 of 2) 16522 ENSMUSG00000017002.14 ENSMUSG00000017002 ENSMUST00000167427 Slpi protein_coding Interval_17121 chr10 71447536 71449277 + 0 NA Intergenic Intergenic -34675 ENSMUSG00000112608.1 ENSMUSG00000112608 ENSMUST00000217831 Gm46233 processed_pseudogene Interval_102916 chr3 32752955 32753141 + 0 NA Intergenic Intergenic -15443 ENSMUSG00000037531.8 ENSMUSG00000037531 ENSMUST00000192021 Mrpl47 protein_coding Interval_122143 chr5 18081848 18084349 + 0 NA Intergenic Intergenic 120549 ENSMUSG00000028777.8 ENSMUSG00000028777 ENSMUST00000030561 Gnat3 protein_coding Interval_32818 chr11 111052202 111052434 + 0 NA Intergenic Intergenic -13846 ENSMUSG00000041695.2 ENSMUSG00000041695 ENSMUST00000042970 Kcnj2 protein_coding Interval_166740 chr9 62353853 62354351 + 0 NA intron (ENSMUSG00000032249.14, intron 1 of 4) protein_coding-intron (ENSMUSG00000032249.14, intron 1 of 6) 11638 ENSMUSG00000032249.14 ENSMUSG00000032249 ENSMUST00000145679 Anp32a protein_coding Interval_39241 chr12 86145380 86146475 + 0 NA intron (ENSMUSG00000007867.9, intron 5 of 8) protein_coding-intron (ENSMUSG00000007867.9, intron 4 of 7) -23414 ENSMUSG00000097543.1 ENSMUSG00000097543 ENSMUST00000181667 Gm805 lincRNA Interval_22479 chr11 10919721 10920075 + 0 NA Intergenic Intergenic -196587 ENSMUSG00000050830.17 ENSMUSG00000050830 ENSMUST00000154155 Vwc2 protein_coding Interval_158658 chr8 84997521 84998631 + 0 NA promoter-TSS (ENSMUSG00000052566.8) protein_coding-promoter-TSS (ENSMUSG00000052566.8) 7434 ENSMUSG00000052566.8 ENSMUSG00000052566 ENSMUST00000209652 Hook2 protein_coding Interval_111452 chr4 21744641 21746491 + 0 NA intron (ENSMUSG00000028252.20, intron 8 of 10) protein_coding-intron (ENSMUSG00000028252.20, intron 9 of 12) 17808 ENSMUSG00000028252.20 ENSMUSG00000028252 ENSMUST00000133712 Ccnc protein_coding Interval_128099 chr5 110862692 110862886 + 0 NA intron (ENSMUSG00000029521.7, intron 7 of 13) protein_coding-intron (ENSMUSG00000029521.7, intron 8 of 14) -13814 ENSMUSG00000104602.1 ENSMUSG00000104602 ENSMUST00000198807 Gm42779 processed_pseudogene Interval_46472 chr13 66429393 66429686 + 0 NA TTS (ENSMUSG00000074832.11) protein_coding-TTS (ENSMUSG00000074832.11) 11579 ENSMUSG00000074832.11 ENSMUSG00000074832 ENSMUST00000172579 2410141K09Rik protein_coding Interval_156775 chr8 58911396 58913778 + 0 NA promoter-TSS (ENSMUSG00000096914.3) protein_coding-promoter-TSS (ENSMUSG00000096914.3) 330 ENSMUSG00000049946.7 ENSMUSG00000049946 ENSMUST00000160055 BC030500 protein_coding Interval_33822 chr11 118742798 118743386 + 0 NA intron (ENSMUSG00000025576.17, intron 2 of 14) protein_coding-intron (ENSMUSG00000025576.17, intron 2 of 14) -48280 ENSMUSG00000085059.1 ENSMUSG00000085059 ENSMUST00000146016 Gm11750 lincRNA Interval_134660 chr6 30190549 30192040 + 0 NA Intergenic Intergenic 18401 ENSMUSG00000103108.2 ENSMUSG00000103108 ENSMUST00000194541 Rncr4 lincRNA Interval_131842 chr5 140306125 140306548 + 0 NA intron (ENSMUSG00000029554.15, intron 4 of 16) protein_coding-intron (ENSMUSG00000029554.15, intron 4 of 17) -15320 ENSMUSG00000036639.12 ENSMUSG00000036639 ENSMUST00000145898 Nudt1 protein_coding Interval_65434 chr16 22315579 22316251 + 0 NA Intergenic Intergenic 19777 ENSMUSG00000116857.2 ENSMUSG00000116857 ENSMUST00000231661 Gm49582 unprocessed_pseudogene Interval_68205 chr16 68187908 68188271 + 0 NA Intergenic Intergenic -23234 ENSMUSG00000116638.1 ENSMUSG00000116638 ENSMUST00000232077 Gm49650 processed_pseudogene Interval_140369 chr6 117407900 117408356 + 0 NA Intergenic Intergenic 15489 ENSMUSG00000107434.1 ENSMUSG00000107434 ENSMUST00000203927 Gm4640 lincRNA Interval_8061 chr1 135507590 135508390 + 0 NA intron (ENSMUSG00000009418.16, intron 6 of 30) protein_coding-intron (ENSMUSG00000009418.16, intron 3 of 29) 17348 ENSMUSG00000104524.1 ENSMUSG00000104524 ENSMUST00000192904 Gm37333 TEC Interval_85216 chr19 23879600 23879961 + 0 NA intron (ENSMUSG00000024897.9, intron 1 of 12) protein_coding-intron (ENSMUSG00000024897.9, intron 1 of 12) -24677 ENSMUSG00000024897.9 ENSMUSG00000024897 ENSMUST00000237688 Apba1 protein_coding Interval_62195 chr15 88724867 88725170 + 0 NA intron (ENSMUSG00000022387.17, intron 2 of 12) protein_coding-intron (ENSMUSG00000022387.17, intron 2 of 7) -5863 ENSMUSG00000022387.17 ENSMUSG00000022387 ENSMUST00000139515 Brd1 protein_coding Interval_125125 chr5 64714208 64715343 + 0 NA promoter-TSS (ENSMUSG00000097640.7) processed_transcript-promoter-TSS (ENSMUSG00000097640.7) -16254 ENSMUSG00000097668.2 ENSMUSG00000097668 ENSMUST00000180650 Gm26761 lincRNA Interval_57324 chr15 8747056 8747517 + 0 NA Intergenic Intergenic -36877 ENSMUSG00000005360.14 ENSMUSG00000005360 ENSMUST00000126747 Slc1a3 protein_coding Interval_46975 chr13 73879717 73880237 + 0 NA Intergenic Intergenic -32365 ENSMUSG00000021567.15 ENSMUSG00000021567 ENSMUST00000221679 Nkd2 protein_coding Interval_123214 chr5 30684079 30684585 + 0 NA Intergenic Intergenic 17334 ENSMUSG00000029177.9 ENSMUSG00000029177 ENSMUST00000134372 Cenpa protein_coding Interval_371 chr1 4659967 4661252 + 0 NA Intergenic Intergenic 28794 ENSMUSG00000098104.1 ENSMUSG00000098104 ENSMUST00000182774 Gm6085 processed_pseudogene Interval_148354 chr7 80702175 80702746 + 0 NA Intergenic Intergenic -49362 ENSMUSG00000108321.1 ENSMUSG00000108321 ENSMUST00000205608 Gm44649 antisense Interval_25019 chr11 43208462 43208758 + 0 NA intron (ENSMUSG00000055415.8, intron 8 of 20) protein_coding-intron (ENSMUSG00000055415.8, intron 9 of 21) 23654 ENSMUSG00000086170.1 ENSMUSG00000086170 ENSMUST00000136288 Gm12144 antisense Interval_96835 chr2 128728907 128729474 + 0 NA exon (ENSMUSG00000014361.5, exon 2 of 19) protein_coding-exon (ENSMUSG00000014361.5, exon 2 of 19) 24515 ENSMUSG00000085036.1 ENSMUSG00000085036 ENSMUST00000145178 Gm14011 antisense Interval_59603 chr15 55871100 55871711 + 0 NA intron (ENSMUSG00000060429.12, intron 1 of 1) protein_coding-intron (ENSMUSG00000060429.12, intron 1 of 6) 34905 ENSMUSG00000060429.12 ENSMUSG00000060429 ENSMUST00000140574 Sntb1 protein_coding Interval_15615 chr10 52325861 52326631 + 0 NA Intergenic Intergenic 17411 ENSMUSG00000112550.1 ENSMUSG00000112550 ENSMUST00000218299 Gm6627 processed_pseudogene Interval_57442 chr15 10981377 10982270 + 0 NA promoter-TSS (ENSMUSG00000022244.7) protein_coding-promoter-TSS (ENSMUSG00000022244.7) -1583 ENSMUSG00000022244.7 ENSMUSG00000022244 ENSMUST00000228886 Amacr protein_coding Interval_121082 chr4 152731105 152732186 + 0 NA Intergenic Intergenic 34105 ENSMUSG00000073699.3 ENSMUSG00000073699 ENSMUST00000143133 Gm833 lincRNA Interval_174080 chrX 134474628 134476120 + 0 NA promoter-TSS (ENSMUSG00000009596.9) protein_coding-promoter-TSS (ENSMUSG00000009596.9) -386 ENSMUSG00000009596.9 ENSMUSG00000009596 ENSMUST00000131311 Taf7l protein_coding Interval_97895 chr2 145087439 145087652 + 0 NA Intergenic Intergenic -80374 ENSMUSG00000063873.10 ENSMUSG00000063873 ENSMUST00000131123 Slc24a3 protein_coding Interval_129907 chr5 123023233 123023990 + 0 NA intron (ENSMUSG00000049686.14, intron 1 of 1) protein_coding-intron (ENSMUSG00000049686.14, intron 1 of 2) 8273 ENSMUSG00000049686.14 ENSMUSG00000049686 ENSMUST00000152213 Orai1 protein_coding Interval_131950 chr5 140997875 140999022 + 0 NA intron (ENSMUSG00000036526.8, intron 1 of 2) protein_coding-intron (ENSMUSG00000036526.8, intron 1 of 24) 2023 ENSMUSG00000036526.8 ENSMUSG00000036526 ENSMUST00000199091 Card11 protein_coding Interval_10154 chr1 166141964 166143354 + 0 NA intron (ENSMUSG00000000544.14, intron 1 of 2) protein_coding-intron (ENSMUSG00000000544.14, intron 1 of 3) 12192 ENSMUSG00000000544.14 ENSMUSG00000000544 ENSMUST00000166860 Gpa33 protein_coding Interval_30583 chr11 95244921 95245935 + 0 NA Intergenic Intergenic -16101 ENSMUSG00000020872.4 ENSMUSG00000020872 ENSMUST00000021242 Tac4 protein_coding Interval_165830 chr9 53629836 53630247 + 0 NA intron (ENSMUSG00000032030.16, intron 10 of 17) protein_coding-intron (ENSMUSG00000032030.16, intron 11 of 18) -9936 ENSMUSG00000064622.1 ENSMUSG00000064622 ENSMUST00000082688 Gm22304 snoRNA Interval_159541 chr8 95339204 95340715 + 0 NA intron (ENSMUSG00000031792.15, intron 3 of 4) protein_coding-intron (ENSMUSG00000031792.15, intron 3 of 6) 7656 ENSMUSG00000031792.15 ENSMUSG00000031792 ENSMUST00000151223 Usb1 protein_coding Interval_136900 chr6 63679414 63679624 + 0 NA intron (ENSMUSG00000071424.10, intron 2 of 8) protein_coding-intron (ENSMUSG00000071424.10, intron 2 of 15) 104548 ENSMUSG00000108068.1 ENSMUSG00000108068 ENSMUST00000204208 Gm44075 processed_pseudogene Interval_130563 chr5 128844225 128844443 + 0 NA intron (ENSMUSG00000029420.14, intron 1 of 20) protein_coding-intron (ENSMUSG00000029420.14, intron 2 of 21) -68784 ENSMUSG00000106522.1 ENSMUSG00000106522 ENSMUST00000199333 Gm42871 sense_intronic Interval_67845 chr16 57753855 57755841 + 0 NA promoter-TSS (ENSMUSG00000068196.5) protein_coding-promoter-TSS (ENSMUSG00000068196.5) -133 ENSMUSG00000068196.5 ENSMUSG00000068196 ENSMUST00000232382 Col8a1 protein_coding Interval_138337 chr6 87365487 87366126 + 0 NA Intergenic Intergenic -7551 ENSMUSG00000030049.5 ENSMUSG00000030049 ENSMUST00000032128 Gkn2 protein_coding Interval_118947 chr4 134633682 134634794 + 0 NA intron (ENSMUSG00000037306.13, intron 2 of 8) protein_coding-intron (ENSMUSG00000037306.13, intron 3 of 12) -66387 ENSMUSG00000099289.1 ENSMUSG00000099289 ENSMUST00000185007 Mir6403 miRNA Interval_70793 chr17 14586701 14588155 + 0 NA Intergenic Intergenic 83438 ENSMUSG00000023885.9 ENSMUSG00000023885 ENSMUST00000232616 Thbs2 protein_coding Interval_85567 chr19 28648988 28651748 + 0 NA intron (ENSMUSG00000052942.13, intron 2 of 10) protein_coding-intron (ENSMUSG00000052942.13, intron 2 of 9) -27860 ENSMUSG00000097735.7 ENSMUSG00000097735 ENSMUST00000181625 D930032P07Rik lincRNA Interval_111147 chr4 13157416 13157647 + 0 NA Intergenic Intergenic 81391 ENSMUSG00000086227.1 ENSMUSG00000086227 ENSMUST00000139614 Gm11820 lincRNA Interval_133264 chr5 150943707 150943978 + 0 NA Intergenic Intergenic -8862 ENSMUSG00000058488.7 ENSMUSG00000058488 ENSMUST00000202096 Kl protein_coding Interval_75770 chr17 71194507 71195052 + 0 NA intron (ENSMUSG00000024052.17, intron 1 of 19) protein_coding-intron (ENSMUSG00000024052.17, intron 1 of 19) 11223 ENSMUSG00000024052.17 ENSMUSG00000024052 ENSMUST00000125665 Lpin2 protein_coding Interval_147656 chr7 70754823 70755182 + 0 NA Intergenic Intergenic 2586 ENSMUSG00000089401.1 ENSMUSG00000089401 ENSMUST00000158776 Gm24880 rRNA Interval_162869 chr9 10763627 10764145 + 0 NA intron (ENSMUSG00000039488.15, intron 1 of 20) protein_coding-intron (ENSMUSG00000039488.15, intron 1 of 24) 29246 ENSMUSG00000111209.1 ENSMUSG00000111209 ENSMUST00000213753 Gm7529 processed_pseudogene Interval_22887 chr11 17118105 17118753 + 0 NA Intergenic Intergenic -22785 ENSMUSG00000082099.1 ENSMUSG00000082099 ENSMUST00000121971 Gm12013 processed_pseudogene Interval_46241 chr13 62901543 62901834 + 0 NA Intergenic Intergenic -28930 ENSMUSG00000069805.10 ENSMUSG00000069805 ENSMUST00000134814 Fbp1 protein_coding Interval_129802 chr5 122439074 122439406 + 0 NA promoter-TSS (ENSMUSG00000079906.2) processed_pseudogene-promoter-TSS (ENSMUSG00000079906.2) -325 ENSMUSG00000079906.2 ENSMUSG00000079906 ENSMUST00000116022 Gm15846 processed_pseudogene Interval_156599 chr8 54190124 54190328 + 0 NA Intergenic Intergenic 112447 ENSMUSG00000031520.6 ENSMUSG00000031520 ENSMUST00000210831 Vegfc protein_coding Interval_111690 chr4 25817763 25817971 + 0 NA Intergenic Intergenic 1906 ENSMUSG00000065048.1 ENSMUSG00000065048 ENSMUST00000083114 Gm24042 snRNA Interval_81520 chr18 61357550 61357881 + 0 NA intron (ENSMUSG00000033871.14, intron 1 of 11) protein_coding-intron (ENSMUSG00000033871.14, intron 2 of 12) -40098 ENSMUSG00000093026.1 ENSMUSG00000093026 ENSMUST00000175285 Gm25301 miRNA Interval_56877 chr14 122718907 122719264 + 0 NA intron (ENSMUSG00000041650.15, intron 2 of 2) protein_coding-intron (ENSMUSG00000041650.15, intron 18 of 23) 32769 ENSMUSG00000115264.1 ENSMUSG00000115264 ENSMUST00000226674 Gm49260 TEC Interval_105825 chr3 89544163 89544374 + 0 NA intron (ENSMUSG00000000794.9, intron 1 of 7) protein_coding-intron (ENSMUSG00000000794.9, intron 1 of 7) 89727 ENSMUSG00000027952.16 ENSMUSG00000027952 ENSMUST00000184515 Pmvk protein_coding Interval_170217 chr9 106258919 106260998 + 0 NA Intergenic Intergenic 11998 ENSMUSG00000097592.2 ENSMUSG00000097592 ENSMUST00000180701 4930500F10Rik antisense Interval_87662 chr19 54075923 54076546 + 0 NA Intergenic Intergenic -8325 ENSMUSG00000117921.1 ENSMUSG00000117921 ENSMUST00000236398 Gm50186 lincRNA Interval_99761 chr2 164760909 164762743 + 0 NA TTS (ENSMUSG00000017299.13) protein_coding-TTS (ENSMUSG00000017299.13) 167 ENSMUSG00000088226.1 ENSMUSG00000088226 ENSMUST00000157601 Gm22596 misc_RNA Interval_168215 chr9 77992502 77992696 + 0 NA promoter-TSS (ENSMUSG00000111610.1) lincRNA-promoter-TSS (ENSMUSG00000111610.1) 0 ENSMUSG00000111610.1 ENSMUSG00000111610 ENSMUST00000216017 Gm34829 lincRNA Interval_131662 chr5 139133340 139134489 + 0 NA intron (ENSMUSG00000025855.13, intron 1 of 2) protein_coding-intron (ENSMUSG00000025855.13, intron 1 of 2) 16087 ENSMUSG00000025855.13 ENSMUSG00000025855 ENSMUST00000130180 Prkar1b protein_coding Interval_128872 chr5 115788783 115789143 + 0 NA Intergenic Intergenic 13196 ENSMUSG00000083833.4 ENSMUSG00000083833 ENSMUST00000118829 Gm13841 processed_pseudogene Interval_149451 chr7 98685721 98686573 + 0 NA intron (ENSMUSG00000086477.3, intron 3 of 3) transcribed_unitary_pseudogene-intron (ENSMUSG00000086477.3, intron 3 of 3) -5500 ENSMUSG00000109101.1 ENSMUSG00000109101 ENSMUST00000207234 Gm45132 TEC Interval_79443 chr18 31910418 31911466 + 0 NA exon (ENSMUSG00000044982.7, exon 1 of 1) protein_coding-exon (ENSMUSG00000044982.7, exon 1 of 1) 882 ENSMUSG00000044982.7 ENSMUSG00000044982 ENSMUST00000054984 Sft2d3 protein_coding Interval_172045 chr9 123850680 123851842 + 0 NA intron (ENSMUSG00000025241.16, intron 1 of 18) protein_coding-intron (ENSMUSG00000025241.16, intron 1 of 18) -6655 ENSMUSG00000025241.16 ENSMUSG00000025241 ENSMUST00000216136 Fyco1 protein_coding Interval_137017 chr6 66464623 66465366 + 0 NA intron (ENSMUSG00000107479.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000107479.1, intron 1 of 1) 705 ENSMUSG00000107479.1 ENSMUSG00000107479 ENSMUST00000203449 2610300M13Rik lincRNA Interval_41726 chr12 118374927 118375201 + 0 NA Intergenic Intergenic -73696 ENSMUSG00000025323.10 ENSMUSG00000025323 ENSMUST00000221844 Sp4 protein_coding Interval_125110 chr5 64579607 64580548 + 0 NA Intergenic Intergenic -15258 ENSMUSG00000104806.1 ENSMUSG00000104806 ENSMUST00000197120 Gm42566 TEC Interval_49570 chr13 113034820 113036375 + 0 NA promoter-TSS (ENSMUSG00000076146.1) miRNA-promoter-TSS (ENSMUSG00000076146.1) 210 ENSMUSG00000078926.8 ENSMUSG00000078926 ENSMUST00000181741 Cdc20b protein_coding Interval_149571 chr7 99689939 99690969 + 0 NA TTS (ENSMUSG00000030737.17) protein_coding-TTS (ENSMUSG00000030737.17) 1315 ENSMUSG00000030737.17 ENSMUSG00000030737 ENSMUST00000207090 Slco2b1 protein_coding Interval_78794 chr18 20674546 20675215 + 0 NA TTS (ENSMUSG00000061808.4) protein_coding-TTS (ENSMUSG00000061808.4) 8083 ENSMUSG00000091449.3 ENSMUSG00000091449 ENSMUST00000165229 Gm10269 processed_pseudogene Interval_128143 chr5 111269454 111270190 + 0 NA intron (ENSMUSG00000033209.17, intron 13 of 22) protein_coding-intron (ENSMUSG00000033209.17, intron 14 of 23) 5272 ENSMUSG00000099130.1 ENSMUSG00000099130 ENSMUST00000183861 Gm27602 misc_RNA Interval_71931 chr17 27071545 27071986 + 0 NA intron (ENSMUSG00000042644.9, intron 1 of 57) protein_coding-intron (ENSMUSG00000042644.9, intron 1 of 57) -19480 ENSMUSG00000098826.1 ENSMUSG00000098826 ENSMUST00000184226 Mir7677 miRNA Interval_116865 chr4 117811104 117811329 + 0 NA Intergenic Intergenic 14440 ENSMUSG00000083507.1 ENSMUSG00000083507 ENSMUST00000117298 Gm12842 processed_pseudogene Interval_49324 chr13 110805703 110806127 + 0 NA Intergenic Intergenic 37206 ENSMUSG00000114587.1 ENSMUSG00000114587 ENSMUST00000225026 Gm48533 processed_pseudogene Interval_90121 chr2 28304599 28305513 + 0 NA Intergenic Intergenic 18994 ENSMUSG00000087196.1 ENSMUSG00000087196 ENSMUST00000144634 Gm13373 lincRNA Interval_92489 chr2 60077294 60078245 + 0 NA intron (ENSMUSG00000026987.16, intron 1 of 2) protein_coding-intron (ENSMUSG00000026987.16, intron 1 of 34) 20945 ENSMUSG00000087181.3 ENSMUSG00000087181 ENSMUST00000140763 Gm13570 processed_pseudogene Interval_22054 chr11 6030398 6030788 + 0 NA intron (ENSMUSG00000057897.14, intron 1 of 5) protein_coding-intron (ENSMUSG00000057897.14, intron 1 of 18) -46455 ENSMUSG00000057897.14 ENSMUSG00000057897 ENSMUST00000129098 Camk2b protein_coding Interval_170039 chr9 103980414 103981052 + 0 NA Intergenic Intergenic -20598 ENSMUSG00000099722.3 ENSMUSG00000099722 ENSMUST00000213265 Gm29154 lincRNA Interval_113936 chr4 59997558 59998509 + 0 NA intron (ENSMUSG00000078689.8, intron 1 of 6) protein_coding-intron (ENSMUSG00000078689.8, intron 1 of 6) 33739 ENSMUSG00000078689.8 ENSMUSG00000078689 ENSMUST00000107520 Mup6 protein_coding Interval_135596 chr6 41150618 41151218 + 0 NA promoter-TSS (ENSMUSG00000076473.3) TR_V_gene-promoter-TSS (ENSMUSG00000076473.3) -822 ENSMUSG00000076473.3 ENSMUSG00000076473 ENSMUST00000103274 Trbv16 TR_V_gene Interval_45378 chr13 54757900 54758896 + 0 NA TTS (ENSMUSG00000034891.13) protein_coding-TTS (ENSMUSG00000034891.13) 4669 ENSMUSG00000034891.13 ENSMUSG00000034891 ENSMUST00000138067 Sncb protein_coding Interval_95344 chr2 106807516 106807734 + 0 NA intron (ENSMUSG00000016386.15, intron 4 of 6) protein_coding-intron (ENSMUSG00000016386.15, intron 4 of 6) -1710 ENSMUSG00000105886.1 ENSMUSG00000105886 ENSMUST00000200346 Gm22813 scaRNA Interval_77792 chr18 3541799 3543209 + 0 NA Intergenic Intergenic -16171 ENSMUSG00000117454.1 ENSMUSG00000117454 ENSMUST00000234359 Gm50090 processed_pseudogene Interval_93075 chr2 69955748 69956256 + 0 NA exon (ENSMUSG00000044308.17, exon 18 of 39) protein_coding-exon (ENSMUSG00000044308.17, exon 18 of 39) -32784 ENSMUSG00000044308.17 ENSMUSG00000044308 ENSMUST00000123890 Ubr3 protein_coding Interval_126216 chr5 82639704 82640183 + 0 NA Intergenic Intergenic 159122 ENSMUSG00000080586.1 ENSMUSG00000080586 ENSMUST00000116936 Mir1187 miRNA Interval_112297 chr4 40187853 40190784 + 0 NA intron (ENSMUSG00000028405.9, intron 16 of 20) protein_coding-intron (ENSMUSG00000028405.9, intron 16 of 20) 25599 ENSMUSG00000028405.9 ENSMUSG00000028405 ENSMUST00000135787 Aco1 protein_coding Interval_164552 chr9 38505720 38506086 + 0 NA Intergenic Intergenic -5270 ENSMUSG00000077240.1 ENSMUSG00000077240 ENSMUST00000104052 Gm23271 snoRNA Interval_125226 chr5 65518091 65518491 + 0 NA intron (ENSMUSG00000037822.12, intron 1 of 2) protein_coding-intron (ENSMUSG00000037822.12, intron 1 of 1) 17469 ENSMUSG00000105601.1 ENSMUSG00000105601 ENSMUST00000199296 Gm42725 TEC Interval_167670 chr9 71747042 71748237 + 0 NA intron (ENSMUSG00000032232.14, intron 1 of 17) protein_coding-intron (ENSMUSG00000032232.14, intron 1 of 18) 79898 ENSMUSG00000099220.1 ENSMUSG00000099220 ENSMUST00000183453 Gm27220 processed_pseudogene Interval_57108 chr15 6564565 6566048 + 0 NA intron (ENSMUSG00000022148.16, intron 1 of 1) protein_coding-intron (ENSMUSG00000022148.16, intron 1 of 1) -4221 ENSMUSG00000022148.16 ENSMUSG00000022148 ENSMUST00000161947 Fyb protein_coding Interval_106147 chr3 93688678 93689170 + 0 NA promoter-TSS (ENSMUSG00000104144.1) unprocessed_pseudogene-promoter-TSS (ENSMUSG00000104144.1) -917 ENSMUSG00000104144.1 ENSMUSG00000104144 ENSMUST00000192747 Gm18433 unprocessed_pseudogene Interval_87050 chr19 45804641 45805255 + 0 NA intron (ENSMUSG00000025221.16, intron 1 of 9) protein_coding-intron (ENSMUSG00000025221.16, intron 1 of 8) -1374 ENSMUSG00000025221.16 ENSMUSG00000025221 ENSMUST00000159446 Kcnip2 protein_coding Interval_144515 chr7 25636305 25636515 + 0 NA intron (ENSMUSG00000060376.7, intron 4 of 8) protein_coding-intron (ENSMUSG00000060376.7, intron 4 of 8) -4667 ENSMUSG00000060376.7 ENSMUSG00000060376 ENSMUST00000071329 Bckdha protein_coding Interval_49709 chr13 114142264 114142464 + 0 NA intron (ENSMUSG00000114213.1, intron 7 of 13) protein_coding-intron (ENSMUSG00000042348.10, intron 4 of 4) 9228 ENSMUSG00000114213.1 ENSMUSG00000114213 ENSMUST00000225044 A430090L17Rik antisense Interval_3474 chr1 58689425 58690338 + 0 NA intron (ENSMUSG00000047528.13, intron 3 of 13) protein_coding-intron (ENSMUSG00000047528.13, intron 4 of 14) 2561 ENSMUSG00000047528.13 ENSMUSG00000047528 ENSMUST00000188839 Flacc1 protein_coding Interval_22344 chr11 8973477 8973717 + 0 NA promoter-TSS (ENSMUSG00000046634.12) protein_coding-promoter-TSS (ENSMUSG00000046634.12) -23058 ENSMUSG00000046634.12 ENSMUSG00000046634 ENSMUST00000155886 Pkd1l1 protein_coding Interval_109121 chr3 135934900 135936373 + 0 NA intron (ENSMUSG00000104710.1, intron 1 of 3) antisense-intron (ENSMUSG00000104710.1, intron 1 of 3) 7404 ENSMUSG00000104710.1 ENSMUSG00000104710 ENSMUST00000198354 Gm31243 antisense Interval_33259 chr11 115513162 115514677 + 0 NA exon (ENSMUSG00000020737.12, exon 1 of 2) protein_coding-exon (ENSMUSG00000020737.12, exon 1 of 2) 452 ENSMUSG00000020737.12 ENSMUSG00000020737 ENSMUST00000142238 Jpt1 protein_coding Interval_88111 chr19 59218815 59220483 + 0 NA exon (ENSMUSG00000040901.8, exon 1 of 3) protein_coding-exon (ENSMUSG00000040901.8, exon 1 of 3) 435 ENSMUSG00000040901.8 ENSMUSG00000040901 ENSMUST00000065204 Kcnk18 protein_coding Interval_50769 chr14 19698778 19699876 + 0 NA Intergenic Intergenic -2118 ENSMUSG00000114199.1 ENSMUSG00000114199 ENSMUST00000223660 Gm49341 processed_pseudogene Interval_150244 chr7 108940617 108940848 + 0 NA TTS (ENSMUSG00000031029.6) protein_coding-TTS (ENSMUSG00000031029.6) 2337 ENSMUSG00000031029.6 ENSMUSG00000031029 ENSMUST00000147369 Eif3f protein_coding Interval_166758 chr9 62467106 62467699 + 0 NA intron (ENSMUSG00000041729.15, intron 2 of 3) protein_coding-intron (ENSMUSG00000041729.15, intron 2 of 11) -18254 ENSMUSG00000041729.15 ENSMUSG00000041729 ENSMUST00000123379 Coro2b protein_coding Interval_25007 chr11 42952482 42952731 + 0 NA Intergenic Intergenic 55111 ENSMUSG00000084627.1 ENSMUSG00000084627 ENSMUST00000122678 Gm25543 misc_RNA Interval_79461 chr18 32074846 32075476 + 0 NA intron (ENSMUSG00000024384.4, intron 2 of 14) protein_coding-intron (ENSMUSG00000024384.4, intron 2 of 13) -8105 ENSMUSG00000024384.4 ENSMUSG00000024384 ENSMUST00000212458 Iws1 protein_coding Interval_138428 chr6 88123468 88124871 + 0 NA Intergenic Intergenic -19911 ENSMUSG00000099095.1 ENSMUSG00000099095 ENSMUST00000185149 Mir6376 miRNA Interval_142587 chr6 143609226 143609622 + 0 NA intron (ENSMUSG00000086887.1, intron 4 of 4) lincRNA-intron (ENSMUSG00000086887.1, intron 4 of 4) 41864 ENSMUSG00000086887.1 ENSMUSG00000086887 ENSMUST00000150559 1700060C16Rik lincRNA Interval_131906 chr5 140726983 140727463 + 0 NA intron (ENSMUSG00000050022.16, intron 2 of 7) protein_coding-intron (ENSMUSG00000050022.16, intron 2 of 7) 3085 ENSMUSG00000050022.16 ENSMUSG00000050022 ENSMUST00000176035 Amz1 protein_coding Interval_158516 chr8 84193974 84195085 + 0 NA intron (ENSMUSG00000097120.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000097120.1, intron 1 of 1) 3138 ENSMUSG00000097120.1 ENSMUSG00000097120 ENSMUST00000181282 Gm26887 lincRNA Interval_139820 chr6 109201949 109203136 + 0 NA Intergenic Intergenic -11700 ENSMUSG00000107641.1 ENSMUSG00000107641 ENSMUST00000205246 Gm32858 processed_pseudogene Interval_90590 chr2 31304223 31306376 + 0 NA Intergenic Intergenic -9116 ENSMUSG00000055632.18 ENSMUSG00000055632 ENSMUST00000141294 Hmcn2 protein_coding Interval_125504 chr5 67757807 67758778 + 0 NA exon (ENSMUSG00000106859.1, exon 1 of 1) TEC-exon (ENSMUSG00000106859.1, exon 1 of 1) 1038 ENSMUSG00000106859.1 ENSMUSG00000106859 ENSMUST00000201074 Gm42737 TEC Interval_174836 chrX 169285045 169285348 + 0 NA intron (ENSMUSG00000031355.16, intron 10 of 12) protein_coding-intron (ENSMUSG00000031355.16, intron 10 of 12) -9813 ENSMUSG00000099179.1 ENSMUSG00000099179 ENSMUST00000184094 Gm27980 misc_RNA Interval_107266 chr3 105070742 105071068 + 0 NA intron (ENSMUSG00000051788.4, intron 2 of 4) protein_coding-intron (ENSMUSG00000051788.4, intron 2 of 4) 4061 ENSMUSG00000051788.4 ENSMUSG00000051788 ENSMUST00000070584 4930564D02Rik protein_coding Interval_86488 chr19 41026058 41026369 + 0 NA Intergenic Intergenic -3172 ENSMUSG00000025014.13 ENSMUSG00000025014 ENSMUST00000237959 Dntt protein_coding Interval_98067 chr2 147367851 147368699 + 0 NA promoter-TSS (ENSMUSG00000037034.16) protein_coding-promoter-TSS (ENSMUSG00000037034.16) -7 ENSMUSG00000037034.16 ENSMUSG00000037034 ENSMUST00000156584 Pax1 protein_coding Interval_124942 chr5 61287944 61288914 + 0 NA Intergenic Intergenic 50304 ENSMUSG00000106370.2 ENSMUSG00000106370 ENSMUST00000198954 Gm43382 processed_pseudogene Interval_65392 chr16 22097016 22098444 + 0 NA intron (ENSMUSG00000033581.17, intron 2 of 14) protein_coding-intron (ENSMUSG00000033581.17, intron 2 of 15) 23506 ENSMUSG00000033581.17 ENSMUSG00000033581 ENSMUST00000127696 Igf2bp2 protein_coding Interval_792 chr1 11329414 11331130 + 0 NA Intergenic Intergenic 36692 ENSMUSG00000103494.1 ENSMUSG00000103494 ENSMUST00000193623 Gm37410 TEC Interval_6725 chr1 119013746 119015199 + 0 NA intron (ENSMUSG00000048402.14, intron 1 of 6) protein_coding-intron (ENSMUSG00000048402.14, intron 1 of 13) 38867 ENSMUSG00000048402.14 ENSMUSG00000048402 ENSMUST00000159678 Gli2 protein_coding Interval_21391 chr10 128327772 128328215 + 0 NA TTS (ENSMUSG00000025381.3) protein_coding-TTS (ENSMUSG00000025381.3) 5479 ENSMUSG00000025381.3 ENSMUSG00000025381 ENSMUST00000219199 Cnpy2 protein_coding Interval_121146 chr4 153511410 153511948 + 0 NA Intergenic Intergenic -29500 ENSMUSG00000039546.9 ENSMUSG00000039546 ENSMUST00000149177 Ajap1 protein_coding Interval_169114 chr9 92697304 92697572 + 0 NA Intergenic Intergenic 5495 ENSMUSG00000101822.1 ENSMUSG00000101822 ENSMUST00000185659 Gm29396 processed_pseudogene Interval_64598 chr16 13586103 13586546 + 0 NA intron (ENSMUSG00000022685.9, intron 22 of 23) protein_coding-intron (ENSMUSG00000022685.9, intron 21 of 23) -54773 ENSMUSG00000077488.1 ENSMUSG00000077488 ENSMUST00000104300 Gm25276 snoRNA Interval_160412 chr8 109099627 109100075 + 0 NA intron (ENSMUSG00000097393.8, intron 1 of 5) lincRNA-intron (ENSMUSG00000097393.8, intron 1 of 4) 24606 ENSMUSG00000097393.8 ENSMUSG00000097393 ENSMUST00000181098 D030068K23Rik lincRNA Interval_156293 chr8 47058025 47059446 + 0 NA intron (ENSMUSG00000038173.15, intron 3 of 6) protein_coding-intron (ENSMUSG00000038173.15, intron 3 of 7) -20558 ENSMUSG00000086190.1 ENSMUSG00000086190 ENSMUST00000130943 4930579M01Rik antisense Interval_169014 chr9 90204574 90204763 + 0 NA exon (ENSMUSG00000037410.13, exon 13 of 13) protein_coding-exon (ENSMUSG00000037410.13, exon 13 of 13) 16957 ENSMUSG00000081520.1 ENSMUSG00000081520 ENSMUST00000120385 Gm16200 processed_pseudogene Interval_141144 chr6 125236289 125236837 + 0 NA exon (ENSMUSG00000030336.14, exon 2 of 6) protein_coding-exon (ENSMUSG00000030336.14, exon 2 of 6) 440 ENSMUSG00000030336.14 ENSMUSG00000030336 ENSMUST00000152650 Cd27 protein_coding Interval_113197 chr4 49559922 49560506 + 0 NA Intergenic Intergenic -21348 ENSMUSG00000028307.9 ENSMUSG00000028307 ENSMUST00000144372 Aldob protein_coding Interval_9176 chr1 154744785 154745653 + 0 NA intron (ENSMUSG00000004110.17, intron 1 of 3) protein_coding-intron (ENSMUSG00000004110.17, intron 1 of 3) 71722 ENSMUSG00000004110.17 ENSMUSG00000004110 ENSMUST00000186256 Cacna1e protein_coding Interval_133533 chr6 6185064 6185690 + 0 NA intron (ENSMUSG00000015112.15, intron 2 of 17) protein_coding-intron (ENSMUSG00000015112.15, intron 2 of 17) -11426 ENSMUSG00000015112.15 ENSMUSG00000015112 ENSMUST00000177698 Slc25a13 protein_coding Interval_17559 chr10 77743456 77743709 + 0 NA promoter-TSS (ENSMUSG00000112864.1) protein_coding-promoter-TSS (ENSMUSG00000112864.1) -944 ENSMUSG00000112864.1 ENSMUSG00000112864 ENSMUST00000218133 Gm18596 protein_coding Interval_58957 chr15 40898413 40898626 + 0 NA intron (ENSMUSG00000022306.9, intron 4 of 7) protein_coding-intron (ENSMUSG00000022306.9, intron 4 of 7) -9046 ENSMUSG00000116397.1 ENSMUSG00000116397 ENSMUST00000230162 Gm49525 TEC Interval_32105 chr11 105272429 105272622 + 0 NA intron (ENSMUSG00000020694.17, intron 17 of 17) protein_coding-intron (ENSMUSG00000020694.17, intron 18 of 20) 63672 ENSMUSG00000020694.17 ENSMUSG00000020694 ENSMUST00000146910 Tlk2 protein_coding Interval_123330 chr5 31494425 31495528 + 0 NA promoter-TSS (ENSMUSG00000064037.13) protein_coding-promoter-TSS (ENSMUSG00000064037.13) -7028 ENSMUSG00000107142.1 ENSMUSG00000107142 ENSMUST00000201177 4930566F21Rik antisense Interval_53074 chr14 54244432 54244735 + 0 NA intron (ENSMUSG00000022174.8, intron 1 of 1) protein_coding-intron (ENSMUSG00000022174.8, intron 1 of 2) 9331 ENSMUSG00000022174.8 ENSMUSG00000022174 ENSMUST00000128231 Dad1 protein_coding Interval_151493 chr7 123063101 123064172 + 0 NA intron (ENSMUSG00000110230.1, intron 2 of 2) lincRNA-intron (ENSMUSG00000109814.1, intron 2 of 3) 32221 ENSMUSG00000109814.1 ENSMUSG00000109814 ENSMUST00000209402 Gm45847 lincRNA Interval_11491 chr1 182176850 182177217 + 0 NA Intergenic Intergenic -12547 ENSMUSG00000091013.3 ENSMUSG00000091013 ENSMUST00000169123 Vmn1r1 protein_coding Interval_17619 chr10 78243845 78245389 + 0 NA promoter-TSS (ENSMUSG00000000374.8) protein_coding-promoter-TSS (ENSMUSG00000000374.8) 11494 ENSMUSG00000112433.1 ENSMUSG00000112433 ENSMUST00000218143 Gm30122 lincRNA Interval_47084 chr13 75501135 75501920 + 0 NA Intergenic Intergenic -7752 ENSMUSG00000113270.1 ENSMUSG00000113270 ENSMUST00000222039 Gm48235 processed_pseudogene Interval_67809 chr16 57348057 57348706 + 0 NA intron (ENSMUSG00000022748.8, intron 1 of 9) protein_coding-intron (ENSMUSG00000022748.8, intron 1 of 9) -4712 ENSMUSG00000043336.14 ENSMUSG00000043336 ENSMUST00000159414 Filip1l protein_coding Interval_13031 chr10 9770422 9770656 + 0 NA promoter-TSS (ENSMUSG00000019790.17) protein_coding-promoter-TSS (ENSMUSG00000019790.17) -21380 ENSMUSG00000112200.1 ENSMUSG00000112200 ENSMUST00000217958 Gm19161 processed_pseudogene Interval_91905 chr2 51165572 51166977 + 0 NA Intergenic Intergenic -17164 ENSMUSG00000017144.8 ENSMUSG00000017144 ENSMUST00000140864 Rnd3 protein_coding Interval_58379 chr15 34021493 34022560 + 0 NA TTS (ENSMUSG00000115428.1) lincRNA-TTS (ENSMUSG00000115428.1) 9374 ENSMUSG00000115605.1 ENSMUSG00000115605 ENSMUST00000228920 Gm9643 processed_pseudogene Interval_136042 chr6 50261094 50262470 + 0 NA promoter-TSS (ENSMUSG00000029821.15) protein_coding-promoter-TSS (ENSMUSG00000029821.15) 193 ENSMUSG00000029821.15 ENSMUSG00000029821 ENSMUST00000204700 Gsdme protein_coding Interval_123474 chr5 32750878 32752382 + 0 NA intron (ENSMUSG00000093574.1, intron 7 of 11) protein_coding-intron (ENSMUSG00000023452.19, intron 3 of 7) -10776 ENSMUSG00000023452.19 ENSMUSG00000023452 ENSMUST00000145759 Pisd protein_coding Interval_120949 chr4 151890195 151890453 + 0 NA Intergenic Intergenic 26090 ENSMUSG00000104142.1 ENSMUSG00000104142 ENSMUST00000191938 Gm37141 TEC Interval_127055 chr5 99986272 99987066 + 0 NA Intergenic Intergenic -7731 ENSMUSG00000000568.15 ENSMUSG00000000568 ENSMUST00000170912 Hnrnpd protein_coding Interval_136233 chr6 52202903 52206291 + 0 NA promoter-TSS (ENSMUSG00000038253.6) protein_coding-promoter-TSS (ENSMUSG00000038253.6) -10 ENSMUSG00000038253.6 ENSMUSG00000038253 ENSMUST00000048794 Hoxa5 protein_coding Interval_166781 chr9 62615864 62617218 + 0 NA Intergenic Intergenic -61319 ENSMUSG00000032243.8 ENSMUSG00000032243 ENSMUST00000159012 Itga11 protein_coding Interval_62413 chr15 92230934 92231633 + 0 NA intron (ENSMUSG00000055022.14, intron 4 of 23) protein_coding-intron (ENSMUSG00000055022.14, intron 4 of 23) -113076 ENSMUSG00000097068.2 ENSMUSG00000097068 ENSMUST00000181901 Gm26760 lincRNA Interval_37746 chr12 71629926 71631142 + 0 NA intron (ENSMUSG00000114028.1, intron 2 of 5) lincRNA-intron (ENSMUSG00000114028.1, intron 2 of 5) 52569 ENSMUSG00000114028.1 ENSMUSG00000114028 ENSMUST00000222033 9630002D21Rik lincRNA Interval_66051 chr16 31255689 31256693 + 0 NA intron (ENSMUSG00000047714.14, intron 5 of 5) protein_coding-intron (ENSMUSG00000047714.14, intron 5 of 5) -5314 ENSMUSG00000098403.1 ENSMUSG00000098403 ENSMUST00000183720 Gm27415 miRNA Interval_149287 chr7 96951152 96952241 + 0 NA promoter-TSS (ENSMUSG00000085560.2) processed_transcript-promoter-TSS (ENSMUSG00000085560.2) -1556 ENSMUSG00000085560.2 ENSMUSG00000085560 ENSMUST00000137923 C230038L03Rik processed_transcript Interval_140885 chr6 122592981 122593200 + 0 NA intron (ENSMUSG00000040613.14, intron 2 of 6) protein_coding-intron (ENSMUSG00000040613.14, intron 3 of 7) 7348 ENSMUSG00000040613.14 ENSMUSG00000040613 ENSMUST00000204035 Apobec1 protein_coding Interval_110393 chr3 157704756 157705233 + 0 NA Intergenic Intergenic 21414 ENSMUSG00000106632.1 ENSMUSG00000106632 ENSMUST00000199819 Gm33466 lincRNA Interval_11702 chr1 184786227 184787100 + 0 NA TTS (ENSMUSG00000026621.13) protein_coding-TTS (ENSMUSG00000026621.13) 22190 ENSMUSG00000026621.13 ENSMUSG00000026621 ENSMUST00000189492 Mtarc1 protein_coding Interval_34448 chr12 4235926 4236238 + 0 NA intron (ENSMUSG00000096199.2, intron 1 of 1) protein_coding-intron (ENSMUSG00000096199.2, intron 1 of 1) -1630 ENSMUSG00000112829.1 ENSMUSG00000112829 ENSMUST00000219209 Gm29696 processed_pseudogene Interval_117580 chr4 124817554 124819134 + 0 NA intron (ENSMUSG00000028890.13, intron 3 of 3) protein_coding-intron (ENSMUSG00000028890.13, intron 2 of 10) -2477 ENSMUSG00000084526.1 ENSMUSG00000084526 ENSMUST00000122577 n-R5s192 rRNA Interval_114772 chr4 85035038 85035760 + 0 NA intron (ENSMUSG00000038070.15, intron 13 of 25) protein_coding-intron (ENSMUSG00000038070.15, intron 13 of 25) -111210 ENSMUSG00000080303.2 ENSMUSG00000080303 ENSMUST00000116649 Gm12419 processed_pseudogene Interval_23523 chr11 23114197 23115568 + 0 NA Intergenic Intergenic -37258 ENSMUSG00000086366.1 ENSMUSG00000086366 ENSMUST00000141678 1700061J23Rik lincRNA Interval_169966 chr9 103305488 103306844 + 0 NA TTS (ENSMUSG00000032555.10) protein_coding-TTS (ENSMUSG00000032555.10) -37770 ENSMUSG00000032555.10 ENSMUSG00000032555 ENSMUST00000185972 Topbp1 protein_coding Interval_85642 chr19 29272000 29273430 + 0 NA intron (ENSMUSG00000024789.13, intron 3 of 23) protein_coding-intron (ENSMUSG00000024789.13, intron 3 of 23) 20274 ENSMUSG00000024789.13 ENSMUSG00000024789 ENSMUST00000238009 Jak2 protein_coding Interval_85180 chr19 23447006 23448431 + 0 NA intron (ENSMUSG00000033207.7, intron 1 of 12) protein_coding-intron (ENSMUSG00000033207.7, intron 1 of 13) 724 ENSMUSG00000033207.7 ENSMUSG00000033207 ENSMUST00000236349 Mamdc2 protein_coding Interval_109837 chr3 148823266 148823577 + 0 NA promoter-TSS (ENSMUSG00000028184.12) protein_coding-promoter-TSS (ENSMUSG00000028184.12) -165731 ENSMUSG00000104786.1 ENSMUSG00000104786 ENSMUST00000196445 Gm43573 antisense Interval_57224 chr15 7966570 7966852 + 0 NA intron (ENSMUSG00000039828.7, intron 10 of 17) protein_coding-intron (ENSMUSG00000039828.7, intron 10 of 17) -8364 ENSMUSG00000116090.1 ENSMUSG00000116090 ENSMUST00000229131 Rpl19-ps6 processed_pseudogene Interval_148121 chr7 79359931 79360465 + 0 NA exon (ENSMUSG00000039202.12, exon 11 of 11) protein_coding-exon (ENSMUSG00000039202.12, exon 11 of 11) -7453 ENSMUSG00000089453.1 ENSMUSG00000089453 ENSMUST00000158828 Gm24224 misc_RNA Interval_136516 chr6 55093050 55094014 + 0 NA intron (ENSMUSG00000003476.16, intron 8 of 11) protein_coding-intron (ENSMUSG00000003476.16, intron 9 of 12) 24381 ENSMUSG00000003476.16 ENSMUSG00000003476 ENSMUST00000169777 Crhr2 protein_coding Interval_91686 chr2 47756418 47756692 + 0 NA Intergenic Intergenic 214571 ENSMUSG00000092853.1 ENSMUSG00000092853 ENSMUST00000175112 Gm25959 miRNA Interval_84146 chr19 7523298 7523505 + 0 NA intron (ENSMUSG00000024759.14, intron 8 of 12) protein_coding-intron (ENSMUSG00000024759.14, intron 8 of 12) 29206 ENSMUSG00000024759.14 ENSMUSG00000024759 ENSMUST00000236382 Atl3 protein_coding Interval_80961 chr18 51188638 51189141 + 0 NA intron (ENSMUSG00000073565.5, intron 1 of 2) protein_coding-intron (ENSMUSG00000073565.5, intron 1 of 1) 65386 ENSMUSG00000095482.1 ENSMUSG00000095482 ENSMUST00000082886 Gm25739 snRNA Interval_125015 chr5 63874545 63875230 + 0 NA intron (ENSMUSG00000060512.7, intron 1 of 4) protein_coding-intron (ENSMUSG00000060512.7, intron 1 of 3) -2589 ENSMUSG00000060512.7 ENSMUSG00000060512 ENSMUST00000199667 0610040J01Rik protein_coding Interval_145166 chr7 30411112 30411331 + 0 NA Intergenic Intergenic -2631 ENSMUSG00000030579.10 ENSMUSG00000030579 ENSMUST00000208125 Tyrobp protein_coding Interval_66281 chr16 32838909 32839467 + 0 NA promoter-TSS (ENSMUSG00000035629.19) protein_coding-promoter-TSS (ENSMUSG00000035629.19) -2617 ENSMUSG00000035629.19 ENSMUSG00000035629 ENSMUST00000149621 Rubcn protein_coding Interval_90054 chr2 27558498 27558838 + 0 NA Intergenic Intergenic 18242 ENSMUSG00000085929.1 ENSMUSG00000085929 ENSMUST00000132898 Gm13421 processed_transcript Interval_134356 chr6 26389613 26389850 + 0 NA Intergenic Intergenic 70699 ENSMUSG00000088387.1 ENSMUSG00000088387 ENSMUST00000157762 Gm24691 snRNA Interval_16252 chr10 61730320 61730559 + 0 NA intron (ENSMUSG00000020085.15, intron 1 of 2) protein_coding-intron (ENSMUSG00000020085.15, intron 5 of 9) 2291 ENSMUSG00000020085.15 ENSMUSG00000020085 ENSMUST00000140664 Aifm2 protein_coding Interval_114855 chr4 86398538 86398783 + 0 NA intron (ENSMUSG00000066113.16, intron 23 of 28) protein_coding-intron (ENSMUSG00000066113.16, intron 10 of 15) 43681 ENSMUSG00000083272.1 ENSMUSG00000083272 ENSMUST00000118478 Gm12550 processed_pseudogene Interval_54488 chr14 70188570 70189123 + 0 NA intron (ENSMUSG00000022091.6, intron 18 of 21) protein_coding-intron (ENSMUSG00000022091.6, intron 16 of 20) -12027 ENSMUSG00000022090.10 ENSMUSG00000022090 ENSMUST00000123125 Pdlim2 protein_coding Interval_12778 chr10 5250669 5251334 + 0 NA intron (ENSMUSG00000096054.3, intron 65 of 145) protein_coding-intron (ENSMUSG00000096054.3, intron 65 of 145) -65475 ENSMUSG00000096054.3 ENSMUSG00000096054 ENSMUST00000214945 Syne1 protein_coding Interval_94420 chr2 91096305 91097320 + 0 NA promoter-TSS (ENSMUSG00000002111.8) protein_coding-promoter-TSS (ENSMUSG00000002111.8) 14422 ENSMUSG00000002111.8 ENSMUSG00000002111 ENSMUST00000132741 Spi1 protein_coding Interval_33466 chr11 116694166 116695417 + 0 NA promoter-TSS (ENSMUSG00000057286.6) protein_coding-promoter-TSS (ENSMUSG00000057286.6) -182 ENSMUSG00000057286.6 ENSMUSG00000057286 ENSMUST00000145441 St6galnac2 protein_coding Interval_109625 chr3 145442433 145444046 + 0 NA intron (ENSMUSG00000028197.4, intron 31 of 59) protein_coding-intron (ENSMUSG00000028197.4, intron 31 of 59) 23913 ENSMUSG00000105959.1 ENSMUSG00000105959 ENSMUST00000199255 D530037P16Rik sense_overlapping Interval_89322 chr2 19315296 19316489 + 0 NA Intergenic Intergenic -28946 ENSMUSG00000087674.7 ENSMUSG00000087674 ENSMUST00000136456 4930447M23Rik lincRNA Interval_116148 chr4 108144795 108146251 + 0 NA promoter-TSS (ENSMUSG00000028603.15) protein_coding-promoter-TSS (ENSMUSG00000028603.15) -27019 ENSMUSG00000028603.15 ENSMUSG00000028603 ENSMUST00000130776 Scp2 protein_coding Interval_102218 chr3 19542689 19543297 + 0 NA intron (ENSMUSG00000027606.12, intron 1 of 4) protein_coding-intron (ENSMUSG00000027606.12, intron 1 of 4) 11746 ENSMUSG00000027606.12 ENSMUSG00000027606 ENSMUST00000165693 Dnajc5b protein_coding Interval_132860 chr5 148365803 148366921 + 0 NA intron (ENSMUSG00000041313.14, intron 1 of 5) protein_coding-intron (ENSMUSG00000041313.14, intron 1 of 12) 33429 ENSMUSG00000041313.14 ENSMUSG00000041313 ENSMUST00000201348 Slc7a1 protein_coding Interval_62487 chr15 93426869 93427216 + 0 NA intron (ENSMUSG00000036167.16, intron 3 of 7) protein_coding-intron (ENSMUSG00000036167.16, intron 4 of 9) 27834 ENSMUSG00000036167.16 ENSMUSG00000036167 ENSMUST00000229721 Pphln1 protein_coding Interval_65324 chr16 21537535 21537994 + 0 NA intron (ENSMUSG00000033653.18, intron 34 of 46) protein_coding-intron (ENSMUSG00000033653.18, intron 33 of 43) 4652 ENSMUSG00000033653.18 ENSMUSG00000033653 ENSMUST00000127903 Vps8 protein_coding Interval_87024 chr19 45607621 45607985 + 0 NA intron (ENSMUSG00000040913.11, intron 1 of 1) protein_coding-intron (ENSMUSG00000040913.11, intron 5 of 8) -15961 ENSMUSG00000040913.11 ENSMUSG00000040913 ENSMUST00000159590 Fbxw4 protein_coding Interval_21594 chr10 130395575 130395768 + 0 NA Intergenic Intergenic -1339 ENSMUSG00000070601.5 ENSMUSG00000070601 ENSMUST00000233031 Vmn2r84 protein_coding Interval_122712 chr5 24828708 24828902 + 0 NA intron (ENSMUSG00000028945.9, intron 1 of 2) protein_coding-intron (ENSMUSG00000028945.9, intron 1 of 7) -7968 ENSMUSG00000089475.1 ENSMUSG00000089475 ENSMUST00000158850 Gm25363 misc_RNA Interval_50808 chr14 19962597 19962799 + 0 NA intron (ENSMUSG00000043004.13, intron 1 of 3) protein_coding-intron (ENSMUSG00000043004.13, intron 2 of 5) 14486 ENSMUSG00000043004.13 ENSMUSG00000043004 ENSMUST00000161247 Gng2 protein_coding Interval_78637 chr18 16037950 16039856 + 0 NA Intergenic Intergenic 5157 ENSMUSG00000088818.1 ENSMUSG00000088818 ENSMUST00000158193 Gm22389 misc_RNA Interval_14464 chr10 34110673 34111731 + 0 NA Intergenic Intergenic -14683 ENSMUSG00000049872.8 ENSMUSG00000049872 ENSMUST00000069125 Calhm5 protein_coding Interval_139684 chr6 106991301 106992595 + 0 NA Intergenic Intergenic -9504 ENSMUSG00000094963.1 ENSMUSG00000094963 ENSMUST00000180326 Gm22418 snRNA Interval_97845 chr2 144399128 144400265 + 0 NA intron (ENSMUSG00000027425.18, intron 7 of 10) protein_coding-intron (ENSMUSG00000027425.18, intron 7 of 10) 30700 ENSMUSG00000098387.2 ENSMUSG00000098387 ENSMUST00000183618 Pet117 protein_coding Interval_20537 chr10 118675799 118676540 + 0 NA Intergenic Intergenic 39557 ENSMUSG00000112029.1 ENSMUSG00000112029 ENSMUST00000219594 Gm33337 lincRNA Interval_51065 chr14 21903472 21903681 + 0 NA Intergenic Intergenic -13810 ENSMUSG00000114352.1 ENSMUSG00000114352 ENSMUST00000224374 4931407E12Rik lincRNA Interval_172147 chrX 8008395 8009585 + 0 NA intron (ENSMUSG00000031163.2, intron 2 of 3) protein_coding-intron (ENSMUSG00000031163.2, intron 2 of 3) 9502 ENSMUSG00000031163.2 ENSMUSG00000031163 ENSMUST00000033503 Glod5 protein_coding Interval_91054 chr2 34718038 34718606 + 0 NA intron (ENSMUSG00000026867.18, intron 5 of 13) protein_coding-intron (ENSMUSG00000026867.18, intron 7 of 25) -17223 ENSMUSG00000026867.18 ENSMUSG00000026867 ENSMUST00000142436 Gapvd1 protein_coding Interval_13048 chr10 10320886 10321604 + 0 NA Intergenic Intergenic -21870 ENSMUSG00000083257.1 ENSMUSG00000083257 ENSMUST00000118589 Gm15568 processed_pseudogene Interval_5011 chr1 84187230 84187524 + 0 NA intron (ENSMUSG00000045658.16, intron 1 of 2) protein_coding-intron (ENSMUSG00000045658.16, intron 1 of 2) 19189 ENSMUSG00000101934.1 ENSMUSG00000101934 ENSMUST00000189162 Gm18304 processed_pseudogene Interval_70846 chr17 15314864 15315774 + 0 NA Intergenic Intergenic 6563 ENSMUSG00000116647.1 ENSMUSG00000116647 ENSMUST00000232519 Gm7423 processed_pseudogene Interval_168639 chr9 84843675 84844466 + 0 NA intron (ENSMUSG00000099724.2, intron 4 of 4) lincRNA-intron (ENSMUSG00000099724.2, intron 4 of 4) -14637 ENSMUSG00000111500.1 ENSMUSG00000111500 ENSMUST00000213542 Gm48820 lincRNA Interval_11835 chr1 186102155 186102363 + 0 NA intron (ENSMUSG00000039246.8, intron 2 of 4) protein_coding-intron (ENSMUSG00000039246.8, intron 2 of 4) 10114 ENSMUSG00000103056.1 ENSMUSG00000103056 ENSMUST00000195813 Gm38268 TEC Interval_145879 chr7 41336981 41337895 + 0 NA exon (ENSMUSG00000082080.3, exon 1 of 1) processed_pseudogene-exon (ENSMUSG00000082080.3, exon 1 of 1) 2054 ENSMUSG00000082080.3 ENSMUSG00000082080 ENSMUST00000117587 Gm9246 processed_pseudogene Interval_140857 chr6 122387158 122387400 + 0 NA intron (ENSMUSG00000118448.1, intron 13 of 21) unitary_pseudogene-intron (ENSMUSG00000118448.1, intron 13 of 21) -4100 ENSMUSG00000040657.3 ENSMUSG00000040657 ENSMUST00000043553 1700063H04Rik lincRNA Interval_4843 chr1 80184253 80184817 + 0 NA promoter-TSS (ENSMUSG00000099552.1) lincRNA-promoter-TSS (ENSMUSG00000099552.1) -184 ENSMUSG00000099552.1 ENSMUSG00000099552 ENSMUST00000185548 9830004L10Rik lincRNA Interval_95308 chr2 106102802 106103046 + 0 NA intron (ENSMUSG00000074981.13, intron 8 of 8) transcribed_unitary_pseudogene-intron (ENSMUSG00000074981.13, intron 6 of 35) -62428 ENSMUSG00000100156.1 ENSMUSG00000100156 ENSMUST00000187484 Gm29053 lincRNA Interval_103695 chr3 51685619 51685859 + 0 NA TTS (ENSMUSG00000061143.15) protein_coding-TTS (ENSMUSG00000061143.15) 4117 ENSMUSG00000074604.9 ENSMUSG00000074604 ENSMUST00000195423 Mgst2 protein_coding Interval_103705 chr3 51749929 51750225 + 0 NA intron (ENSMUSG00000061143.15, intron 2 of 4) protein_coding-intron (ENSMUSG00000061143.15, intron 1 of 3) 12011 ENSMUSG00000102732.1 ENSMUSG00000102732 ENSMUST00000194588 Gm37342 TEC Interval_127117 chr5 100393737 100394075 + 0 NA intron (ENSMUSG00000035325.16, intron 1 of 18) protein_coding-intron (ENSMUSG00000035325.16, intron 8 of 27) -1293 ENSMUSG00000035325.16 ENSMUSG00000035325 ENSMUST00000182144 Sec31a protein_coding Interval_157909 chr8 75530359 75530757 + 0 NA intron (ENSMUSG00000031620.16, intron 3 of 14) protein_coding-intron (ENSMUSG00000031620.16, intron 1 of 12) 65627 ENSMUSG00000103054.1 ENSMUSG00000103054 ENSMUST00000192721 Gm38270 TEC Interval_90699 chr2 31998614 31999029 + 0 NA TTS (ENSMUSG00000001855.15) protein_coding-TTS (ENSMUSG00000001855.15) 4000 ENSMUSG00000001855.15 ENSMUSG00000001855 ENSMUST00000124455 Nup214 protein_coding Interval_173681 chrX 101887827 101888172 + 0 NA intron (ENSMUSG00000079481.11, intron 1 of 7) protein_coding-intron (ENSMUSG00000079481.11, intron 1 of 7) 24725 ENSMUSG00000087712.1 ENSMUSG00000087712 ENSMUST00000157087 Gm25828 snRNA Interval_17996 chr10 81279299 81280106 + 0 NA intron (ENSMUSG00000034917.8, intron 9 of 20) protein_coding-intron (ENSMUSG00000034917.8, intron 9 of 20) 8105 ENSMUSG00000092781.1 ENSMUSG00000092781 ENSMUST00000175040 Mir3057 miRNA Interval_130757 chr5 130187095 130188162 + 0 NA promoter-TSS (ENSMUSG00000080893.1) processed_pseudogene-promoter-TSS (ENSMUSG00000080893.1) 420 ENSMUSG00000025340.14 ENSMUSG00000025340 ENSMUST00000143865 Rabgef1 protein_coding Interval_30545 chr11 95032907 95034124 + 0 NA intron (ENSMUSG00000087630.1, intron 1 of 2) protein_coding-intron (ENSMUSG00000038967.13, intron 2 of 10) 756 ENSMUSG00000087630.1 ENSMUSG00000087630 ENSMUST00000138855 Gm11513 antisense Interval_110036 chr3 152698599 152699913 + 0 NA Intergenic Intergenic -14867 ENSMUSG00000039047.17 ENSMUSG00000039047 ENSMUST00000160651 Pigk protein_coding Interval_116217 chr4 108798395 108799730 + 0 NA Intergenic Intergenic -18559 ENSMUSG00000034557.14 ENSMUSG00000034557 ENSMUST00000042185 Zfyve9 protein_coding Interval_91820 chr2 49872927 49873323 + 0 NA intron (ENSMUSG00000026765.12, intron 4 of 4) protein_coding-intron (ENSMUSG00000026765.12, intron 3 of 9) 33755 ENSMUSG00000088825.1 ENSMUSG00000088825 ENSMUST00000158200 Gm25223 misc_RNA Interval_106062 chr3 92117913 92118401 + 0 NA intron (ENSMUSG00000106143.1, intron 1 of 1) sense_overlapping-intron (ENSMUSG00000104791.1, intron 1 of 5) 4965 ENSMUSG00000106143.1 ENSMUSG00000106143 ENSMUST00000198245 Gm43735 antisense Interval_121337 chr4 155077981 155078222 + 0 NA intron (ENSMUSG00000029048.3, intron 5 of 7) protein_coding-intron (ENSMUSG00000029048.3, intron 4 of 6) 8270 ENSMUSG00000029048.3 ENSMUSG00000029048 ENSMUST00000125357 Rer1 protein_coding Interval_70443 chr17 10275291 10275809 + 0 NA intron (ENSMUSG00000062078.15, intron 2 of 6) protein_coding-intron (ENSMUSG00000062078.15, intron 2 of 6) 43811 ENSMUSG00000062078.15 ENSMUSG00000062078 ENSMUST00000233684 Qk protein_coding Interval_31262 chr11 99192304 99193023 + 0 NA Intergenic Intergenic 20780 ENSMUSG00000037935.16 ENSMUSG00000037935 ENSMUST00000128215 Smarce1 protein_coding Interval_12045 chr1 189070262 189070669 + 0 NA Intergenic Intergenic 5570 ENSMUSG00000103370.1 ENSMUSG00000103370 ENSMUST00000194962 Gm37178 TEC Interval_163426 chr9 21390753 21391465 + 0 NA intron (ENSMUSG00000032178.14, intron 2 of 6) protein_coding-intron (ENSMUSG00000032178.14, intron 4 of 19) 2557 ENSMUSG00000032178.14 ENSMUSG00000032178 ENSMUST00000214200 Ilf3 protein_coding Interval_26707 chr11 59871910 59872337 + 0 NA intron (ENSMUSG00000032615.14, intron 3 of 4) protein_coding-intron (ENSMUSG00000032615.14, intron 3 of 4) -26251 ENSMUSG00000084766.1 ENSMUSG00000084766 ENSMUST00000143391 Gm12714 lincRNA Interval_87086 chr19 46036609 46037819 + 0 NA intron (ENSMUSG00000025223.15, intron 1 of 10) protein_coding-intron (ENSMUSG00000025223.15, intron 1 of 10) 7997 ENSMUSG00000025223.15 ENSMUSG00000025223 ENSMUST00000136203 Ldb1 protein_coding Interval_73645 chr17 42280575 42281445 + 0 NA Intergenic Intergenic -34979 ENSMUSG00000042256.5 ENSMUSG00000042256 ENSMUST00000232968 Ptchd4 protein_coding Interval_165662 chr9 50762172 50762471 + 0 NA TTS (ENSMUSG00000037971.10) protein_coding-TTS (ENSMUSG00000037971.10) 5800 ENSMUSG00000037971.10 ENSMUSG00000037971 ENSMUST00000176160 1110032A03Rik protein_coding Interval_171994 chr9 123297651 123298100 + 0 NA Intergenic Intergenic -9209 ENSMUSG00000111371.1 ENSMUSG00000111371 ENSMUST00000213385 Gm47162 lincRNA Interval_146583 chr7 47034060 47034407 + 0 NA Intergenic Intergenic 16063 ENSMUSG00000109634.1 ENSMUSG00000109634 ENSMUST00000209471 Gm45474 lincRNA Interval_138803 chr6 92027356 92028488 + 0 NA intron (ENSMUSG00000034037.14, intron 2 of 19) protein_coding-intron (ENSMUSG00000034037.14, intron 3 of 20) -11805 ENSMUSG00000087317.1 ENSMUSG00000087317 ENSMUST00000144105 4930466I24Rik antisense Interval_138318 chr6 87156027 87156222 + 0 NA intron (ENSMUSG00000033420.12, intron 16 of 16) protein_coding-intron (ENSMUSG00000033420.12, intron 17 of 17) -15272 ENSMUSG00000108195.1 ENSMUSG00000108195 ENSMUST00000204151 Gm44415 TEC Interval_128617 chr5 114328964 114329317 + 0 NA intron (ENSMUSG00000066952.11, intron 7 of 30) protein_coding-intron (ENSMUSG00000066952.11, intron 7 of 28) 14199 ENSMUSG00000066952.11 ENSMUSG00000066952 ENSMUST00000125230 Myo1h protein_coding Interval_46202 chr13 62460380 62460631 + 0 NA intron (ENSMUSG00000055228.8, intron 1 of 2) protein_coding-intron (ENSMUSG00000055228.8, intron 1 of 2) 6301 ENSMUSG00000113450.1 ENSMUSG00000113450 ENSMUST00000221951 Gm49359 protein_coding Interval_129444 chr5 120201178 120201455 + 0 NA Intergenic Intergenic 25591 ENSMUSG00000029594.12 ENSMUSG00000029594 ENSMUST00000202788 Rbm19 protein_coding Interval_120920 chr4 151637274 151637942 + 0 NA intron (ENSMUSG00000014592.21, intron 3 of 24) protein_coding-intron (ENSMUSG00000014592.21, intron 3 of 23) 224096 ENSMUSG00000014592.21 ENSMUSG00000014592 ENSMUST00000135780 Camta1 protein_coding Interval_112820 chr4 45285061 45286496 + 0 NA exon (ENSMUSG00000035615.12, exon 16 of 16) protein_coding-exon (ENSMUSG00000035615.12, exon 16 of 16) -28320 ENSMUSG00000035601.9 ENSMUSG00000035601 ENSMUST00000145756 Trmt10b protein_coding Interval_81298 chr18 57626922 57627856 + 0 NA intron (ENSMUSG00000058925.11, intron 5 of 5) protein_coding-intron (ENSMUSG00000058925.11, intron 5 of 6) 11196 ENSMUSG00000118322.1 ENSMUSG00000118322 ENSMUST00000236285 2210409D07Rik antisense Interval_89730 chr2 25042235 25042546 + 0 NA intron (ENSMUSG00000036833.16, intron 24 of 33) protein_coding-intron (ENSMUSG00000036833.16, intron 25 of 34) -9276 ENSMUSG00000036833.16 ENSMUSG00000036833 ENSMUST00000141584 Pnpla7 protein_coding Interval_645 chr1 9469353 9471022 + 0 NA Intergenic Intergenic 11517 ENSMUSG00000065625.1 ENSMUSG00000065625 ENSMUST00000083691 Gm24765 snRNA Interval_35274 chr12 19423280 19424976 + 0 NA intron (ENSMUSG00000093908.2, intron 1 of 1) lincRNA-intron (ENSMUSG00000093908.2, intron 1 of 1) -10401 ENSMUSG00000116775.1 ENSMUSG00000116775 ENSMUST00000231385 Gm49769 lincRNA Interval_20609 chr10 119427903 119428194 + 0 NA Intergenic Intergenic 14604 ENSMUSG00000100558.1 ENSMUSG00000100558 ENSMUST00000185238 1700025F24Rik lincRNA Interval_90149 chr2 28547499 28548284 + 0 NA TTS (ENSMUSG00000026821.16) protein_coding-TTS (ENSMUSG00000026821.16) -14306 ENSMUSG00000087667.8 ENSMUSG00000087667 ENSMUST00000131370 Gm13381 antisense Interval_84894 chr19 18655241 18656526 + 0 NA Intergenic Intergenic -15446 ENSMUSG00000024726.10 ENSMUSG00000024726 ENSMUST00000236401 Carnmt1 protein_coding Interval_76108 chr17 75052655 75052872 + 0 NA intron (ENSMUSG00000001870.16, intron 2 of 34) protein_coding-intron (ENSMUSG00000001870.16, intron 2 of 33) 47195 ENSMUSG00000001870.16 ENSMUSG00000001870 ENSMUST00000135750 Ltbp1 protein_coding Interval_117634 chr4 125160345 125160966 + 0 NA Intergenic Intergenic -38135 ENSMUSG00000042677.7 ENSMUSG00000042677 ENSMUST00000131685 Zc3h12a protein_coding Interval_52629 chr14 48127932 48128224 + 0 NA intron (ENSMUSG00000021846.9, intron 1 of 2) protein_coding-intron (ENSMUSG00000021846.9, intron 1 of 5) 2085 ENSMUSG00000115790.1 ENSMUSG00000115790 ENSMUST00000228011 9530086P17Rik TEC Interval_89044 chr2 14985248 14985953 + 0 NA exon (ENSMUSG00000057914.15, exon 13 of 13) protein_coding-exon (ENSMUSG00000057914.15, exon 13 of 13) 19402 ENSMUSG00000104271.1 ENSMUSG00000104271 ENSMUST00000195585 Gm37891 TEC Interval_172657 chrX 41231844 41232675 + 0 NA Intergenic Intergenic -16316 ENSMUSG00000081880.1 ENSMUSG00000081880 ENSMUST00000118988 Gm5385 processed_pseudogene Interval_183 JH792828.1 203931 204835 + 0 NA NA NA NA NA Interval_117590 chr4 124872196 124873533 + 0 NA Intergenic Intergenic -10693 ENSMUSG00000042763.9 ENSMUSG00000042763 ENSMUST00000064444 Maneal protein_coding Interval_161779 chr8 122737130 122737535 + 0 NA intron (ENSMUSG00000110523.1, intron 1 of 6) protein_coding-intron (ENSMUSG00000092329.1, intron 1 of 15) 14993 ENSMUSG00000110523.1 ENSMUSG00000110523 ENSMUST00000212334 C230057M02Rik lincRNA Interval_90031 chr2 27411412 27412590 + 0 NA intron (ENSMUSG00000009621.18, intron 1 of 27) protein_coding-intron (ENSMUSG00000009621.18, intron 1 of 27) 10149 ENSMUSG00000076364.1 ENSMUSG00000076364 ENSMUST00000102409 Gm24049 miRNA Interval_103254 chr3 37556123 37556474 + 0 NA exon (ENSMUSG00000080723.1, exon 1 of 1) processed_pseudogene-exon (ENSMUSG00000080723.1, exon 1 of 1) 205 ENSMUSG00000080723.1 ENSMUSG00000080723 ENSMUST00000119860 Gm12564 processed_pseudogene Interval_61265 chr15 80350263 80350951 + 0 NA intron (ENSMUSG00000022416.15, intron 6 of 36) protein_coding-intron (ENSMUSG00000022416.15, intron 6 of 36) -38721 ENSMUSG00000022416.15 ENSMUSG00000022416 ENSMUST00000160175 Cacna1i protein_coding Interval_50146 chr14 8280734 8281341 + 0 NA Intergenic Intergenic -22883 ENSMUSG00000021751.13 ENSMUSG00000021751 ENSMUST00000171175 Acox2 protein_coding Interval_172026 chr9 123634985 123635239 + 0 NA promoter-TSS (ENSMUSG00000091172.1) antisense-promoter-TSS (ENSMUSG00000091172.1) -276 ENSMUSG00000091172.1 ENSMUSG00000091172 ENSMUST00000164734 Gm17120 antisense Interval_107722 chr3 111988431 111988637 + 0 NA intron (ENSMUSG00000104543.1, intron 2 of 3) lincRNA-intron (ENSMUSG00000104543.1, intron 2 of 3) 106631 ENSMUSG00000104543.1 ENSMUSG00000104543 ENSMUST00000198910 Gm6602 lincRNA Interval_69922 chr17 3212399 3213674 + 0 NA intron (ENSMUSG00000116858.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000116858.1, intron 1 of 2) -18235 ENSMUSG00000116858.1 ENSMUSG00000116858 ENSMUST00000232042 Gm49797 lincRNA Interval_90068 chr2 27703087 27703538 + 0 NA intron (ENSMUSG00000015846.15, intron 2 of 10) protein_coding-intron (ENSMUSG00000015846.15, intron 1 of 9) -21907 ENSMUSG00000015846.15 ENSMUSG00000015846 ENSMUST00000148756 Rxra protein_coding Interval_142972 chr6 147773684 147775079 + 0 NA Intergenic Intergenic -54930 ENSMUSG00000086019.1 ENSMUSG00000086019 ENSMUST00000126447 Gm15762 lincRNA Interval_28839 chr11 78663727 78664355 + 0 NA intron (ENSMUSG00000017376.15, intron 1 of 2) protein_coding-intron (ENSMUSG00000017376.15, intron 1 of 10) 45720 ENSMUSG00000085115.1 ENSMUSG00000085115 ENSMUST00000145158 Gm11197 processed_pseudogene Interval_115919 chr4 106293424 106294163 + 0 NA exon (ENSMUSG00000104192.1, exon 2 of 3) TEC-exon (ENSMUSG00000104192.1, exon 2 of 3) 600 ENSMUSG00000104192.1 ENSMUSG00000104192 ENSMUST00000195679 Gm37253 TEC Interval_59038 chr15 41936585 41937585 + 0 NA Intergenic Intergenic -11912 ENSMUSG00000088469.1 ENSMUSG00000088469 ENSMUST00000157844 Gm24751 snoRNA Interval_136602 chr6 56480795 56481517 + 0 NA intron (ENSMUSG00000004347.17, intron 2 of 19) protein_coding-intron (ENSMUSG00000004347.17, intron 1 of 18) 102690 ENSMUSG00000096087.1 ENSMUSG00000096087 ENSMUST00000104123 Gm24709 snoRNA Interval_110487 chr3 159482462 159483426 + 0 NA Intergenic Intergenic -8474 ENSMUSG00000104864.1 ENSMUSG00000104864 ENSMUST00000197367 Gm43655 processed_pseudogene Interval_66709 chr16 36521294 36522143 + 0 NA intron (ENSMUSG00000051980.13, intron 2 of 2) protein_coding-intron (ENSMUSG00000051980.13, intron 1 of 6) -9068 ENSMUSG00000089118.1 ENSMUSG00000089118 ENSMUST00000158493 Gm25902 misc_RNA Interval_132874 chr5 148445408 148445903 + 0 NA Intergenic Intergenic -11183 ENSMUSG00000106956.1 ENSMUSG00000106956 ENSMUST00000202977 Gm19617 unprocessed_pseudogene Interval_114779 chr4 85207807 85209256 + 0 NA intron (ENSMUSG00000028488.15, intron 1 of 7) protein_coding-intron (ENSMUSG00000028488.15, intron 1 of 8) 32004 ENSMUSG00000084267.1 ENSMUSG00000084267 ENSMUST00000119153 Gm12417 processed_pseudogene Interval_46596 chr13 67458332 67458627 + 0 NA Intergenic Intergenic -1521 ENSMUSG00000097244.1 ENSMUSG00000097244 ENSMUST00000181249 Gm7928 processed_pseudogene Interval_93359 chr2 72397864 72398523 + 0 NA intron (ENSMUSG00000004085.14, intron 10 of 11) protein_coding-intron (ENSMUSG00000004085.14, intron 10 of 19) 37946 ENSMUSG00000084261.1 ENSMUSG00000084261 ENSMUST00000121019 Rpl36a-ps4 processed_pseudogene Interval_87739 chr19 55545243 55546257 + 0 NA intron (ENSMUSG00000024983.10, intron 8 of 8) protein_coding-intron (ENSMUSG00000024983.10, intron 7 of 7) -196514 ENSMUSG00000024985.20 ENSMUSG00000024985 ENSMUST00000148666 Tcf7l2 protein_coding Interval_148639 chr7 83675745 83676407 + 0 NA intron (ENSMUSG00000001741.12, intron 7 of 12) protein_coding-intron (ENSMUSG00000001741.12, intron 6 of 18) 16501 ENSMUSG00000085080.1 ENSMUSG00000085080 ENSMUST00000125131 2310044K18Rik antisense Interval_50512 chr14 14476837 14477315 + 0 NA Intergenic Intergenic -28132 ENSMUSG00000114737.1 ENSMUSG00000114737 ENSMUST00000224271 Gm8483 processed_pseudogene Interval_36676 chr12 51963484 51963709 + 0 NA intron (ENSMUSG00000035181.6, intron 1 of 12) protein_coding-intron (ENSMUSG00000035181.6, intron 1 of 35) -23646 ENSMUSG00000035181.6 ENSMUSG00000035181 ENSMUST00000219277 Heatr5a protein_coding Interval_152092 chr7 129130602 129131566 + 0 NA Intergenic Intergenic -76008 ENSMUSG00000108785.1 ENSMUSG00000108785 ENSMUST00000206489 Gm4259 processed_pseudogene Interval_150038 chr7 105309530 105309958 + 0 NA Intergenic Intergenic -1421 ENSMUSG00000073907.3 ENSMUSG00000073907 ENSMUST00000098153 Olfr689 protein_coding Interval_109602 chr3 145008858 145009485 + 0 NA promoter-TSS (ENSMUSG00000028255.6) protein_coding-promoter-TSS (ENSMUSG00000028255.6) 9744 ENSMUSG00000028255.6 ENSMUSG00000028255 ENSMUST00000198832 Clca1 protein_coding Interval_38214 chr12 76391074 76391868 + 0 NA exon (ENSMUSG00000033454.6, exon 2 of 2) protein_coding-exon (ENSMUSG00000033454.6, exon 2 of 2) 12511 ENSMUSG00000097323.2 ENSMUSG00000097323 ENSMUST00000180709 4930426I24Rik lincRNA Interval_55141 chr14 78589258 78590815 + 0 NA intron (ENSMUSG00000034731.11, intron 18 of 27) protein_coding-intron (ENSMUSG00000034731.11, intron 20 of 28) 10440 ENSMUSG00000115087.1 ENSMUSG00000115087 ENSMUST00000228170 Gm48998 TEC Interval_105477 chr3 86884125 86885017 + 0 NA intron (ENSMUSG00000028078.14, intron 2 of 15) protein_coding-intron (ENSMUSG00000028078.14, intron 2 of 15) 20079 ENSMUSG00000104074.1 ENSMUSG00000104074 ENSMUST00000195159 Gm37025 processed_pseudogene Interval_165895 chr9 54375472 54376357 + 0 NA intron (ENSMUSG00000041268.17, intron 5 of 10) protein_coding-intron (ENSMUSG00000041268.17, intron 37 of 43) 5979 ENSMUSG00000041268.17 ENSMUSG00000041268 ENSMUST00000149709 Dmxl2 protein_coding Interval_170159 chr9 105678287 105679301 + 0 NA exon (ENSMUSG00000032571.14, exon 15 of 15) protein_coding-exon (ENSMUSG00000032571.14, exon 15 of 15) -2999 ENSMUSG00000032571.14 ENSMUSG00000032571 ENSMUST00000214254 Pik3r4 protein_coding Interval_6493 chr1 112378004 112378980 + 0 NA Intergenic Intergenic 26363 ENSMUSG00000101054.1 ENSMUSG00000101054 ENSMUST00000185872 Gm18406 processed_pseudogene Interval_134962 chr6 34160118 34161113 + 0 NA TTS (ENSMUSG00000018999.14) protein_coding-TTS (ENSMUSG00000018999.14) 2867 ENSMUSG00000018999.14 ENSMUSG00000018999 ENSMUST00000138250 Slc35b4 protein_coding Interval_18931 chr10 93217449 93218182 + 0 NA intron (ENSMUSG00000020015.10, intron 4 of 6) protein_coding-intron (ENSMUSG00000020015.10, intron 4 of 16) -21208 ENSMUSG00000020015.10 ENSMUSG00000020015 ENSMUST00000216729 Cdk17 protein_coding Interval_91733 chr2 48903525 48903866 + 0 NA TTS (ENSMUSG00000052155.5) protein_coding-TTS (ENSMUSG00000052155.5) 6318 ENSMUSG00000026761.12 ENSMUSG00000026761 ENSMUST00000123271 Orc4 protein_coding Interval_76661 chr17 83267387 83267896 + 0 NA Intergenic Intergenic -2330 ENSMUSG00000088410.1 ENSMUSG00000088410 ENSMUST00000157785 Gm24240 snoRNA Interval_148579 chr7 82799425 82799910 + 0 NA Intergenic Intergenic -44023 ENSMUSG00000086690.1 ENSMUSG00000086690 ENSMUST00000144828 4933406J10Rik antisense Interval_10089 chr1 165729713 165729935 + 0 NA Intergenic Intergenic 5837 ENSMUSG00000103242.1 ENSMUSG00000103242 ENSMUST00000191813 Gm34767 processed_pseudogene Interval_154251 chr8 13800056 13800367 + 0 NA Intergenic Intergenic 14576 ENSMUSG00000038398.8 ENSMUSG00000038398 ENSMUST00000211643 Upf3a protein_coding Interval_73040 chr17 34309636 34310797 + 0 NA intron (ENSMUSG00000060586.11, intron 2 of 5) protein_coding-intron (ENSMUSG00000060586.11, intron 2 of 5) -2146 ENSMUSG00000092415.2 ENSMUSG00000092415 ENSMUST00000236664 Gm20513 antisense Interval_95498 chr2 110314464 110314696 + 0 NA promoter-TSS (ENSMUSG00000041660.8) protein_coding-promoter-TSS (ENSMUSG00000041660.8) -20 ENSMUSG00000041660.8 ENSMUSG00000041660 ENSMUST00000133608 Bbox1 protein_coding Interval_168519 chr9 82974045 82976098 + 0 NA promoter-TSS (ENSMUSG00000032253.13) protein_coding-promoter-TSS (ENSMUSG00000032253.13) -33532 ENSMUSG00000111839.1 ENSMUSG00000111839 ENSMUST00000216894 Gm39383 lincRNA Interval_101061 chr2 174768445 174769626 + 0 NA promoter-TSS (ENSMUSG00000027524.9) protein_coding-promoter-TSS (ENSMUSG00000027524.9) -887 ENSMUSG00000027524.9 ENSMUSG00000027524 ENSMUST00000162473 Edn3 protein_coding Interval_137913 chr6 83316942 83318102 + 0 NA promoter-TSS (ENSMUSG00000005667.8) protein_coding-promoter-TSS (ENSMUSG00000005667.8) -579 ENSMUSG00000108053.1 ENSMUSG00000108053 ENSMUST00000203437 Gm43890 TEC Interval_143935 chr7 18210897 18211327 + 0 NA Intergenic Intergenic -18665 ENSMUSG00000108798.1 ENSMUSG00000108798 ENSMUST00000206656 Gm9521 processed_pseudogene Interval_22197 chr11 7082994 7083270 + 0 NA intron (ENSMUSG00000020431.5, intron 2 of 19) protein_coding-intron (ENSMUSG00000020431.5, intron 2 of 19) -76750 ENSMUSG00000020431.5 ENSMUSG00000020431 ENSMUST00000135398 Adcy1 protein_coding Interval_167235 chr9 66479851 66480270 + 0 NA intron (ENSMUSG00000038664.16, intron 59 of 77) protein_coding-intron (ENSMUSG00000038664.16, intron 59 of 77) 34549 ENSMUSG00000050503.9 ENSMUSG00000050503 ENSMUST00000056890 Fbxl22 protein_coding Interval_3870 chr1 64020650 64021426 + 0 NA Intergenic Intergenic 21463 ENSMUSG00000098487.1 ENSMUSG00000098487 ENSMUST00000184798 Mir6899 miRNA Interval_168761 chr9 86746143 86746487 + 0 NA intron (ENSMUSG00000033491.13, intron 1 of 2) protein_coding-intron (ENSMUSG00000033491.13, intron 1 of 1) 2666 ENSMUSG00000033491.13 ENSMUSG00000033491 ENSMUST00000036426 Prss35 protein_coding Interval_94147 chr2 84677627 84678807 + 0 NA promoter-TSS (ENSMUSG00000050043.16) protein_coding-promoter-TSS (ENSMUSG00000050043.16) -176 ENSMUSG00000101645.1 ENSMUSG00000101645 ENSMUST00000189772 Gm28635 protein_coding Interval_121637 chr5 4103813 4105071 + 0 NA promoter-TSS (ENSMUSG00000001467.5) protein_coding-promoter-TSS (ENSMUSG00000001467.5) -21 ENSMUSG00000001467.5 ENSMUSG00000001467 ENSMUST00000199909 Cyp51 protein_coding Interval_19561 chr10 103322930 103324074 + 0 NA Intergenic Intergenic -69948 ENSMUSG00000019894.14 ENSMUSG00000019894 ENSMUST00000219936 Slc6a15 protein_coding Interval_157635 chr8 71940698 71941122 + 0 NA Intergenic Intergenic -12537 ENSMUSG00000052446.17 ENSMUSG00000052446 ENSMUST00000151168 Zfp961 protein_coding Interval_73405 chr17 37017338 37017808 + 0 NA exon (ENSMUSG00000076439.12, exon 3 of 8) protein_coding-exon (ENSMUSG00000076439.12, exon 3 of 8) 2230 ENSMUSG00000088819.1 ENSMUSG00000088819 ENSMUST00000158194 Gm22388 misc_RNA Interval_14803 chr10 40024316 40025756 + 0 NA exon (ENSMUSG00000038522.7, exon 1 of 4) protein_coding-exon (ENSMUSG00000038522.7, exon 1 of 4) 159 ENSMUSG00000038522.7 ENSMUSG00000038522 ENSMUST00000239109 Mfsd4b1 protein_coding Interval_101678 chr3 8881189 8882085 + 0 NA TTS (ENSMUSG00000081594.1) processed_pseudogene-TTS (ENSMUSG00000081594.1) 438 ENSMUSG00000081594.1 ENSMUSG00000081594 ENSMUST00000120582 Gm15467 processed_pseudogene Interval_101924 chr3 11590200 11590886 + 0 NA Intergenic Intergenic 68967 ENSMUSG00000098085.1 ENSMUSG00000098085 ENSMUST00000182028 Gm8919 processed_pseudogene Interval_128854 chr5 115614527 115615177 + 0 NA promoter-TSS (ENSMUSG00000041638.18) protein_coding-promoter-TSS (ENSMUSG00000041638.18) 16964 ENSMUSG00000107121.1 ENSMUSG00000107121 ENSMUST00000201728 1110006O24Rik lincRNA Interval_49163 chr13 108939068 108939264 + 0 NA intron (ENSMUSG00000021699.17, intron 1 of 15) protein_coding-intron (ENSMUSG00000021699.17, intron 2 of 16) 79000 ENSMUSG00000021699.17 ENSMUSG00000021699 ENSMUST00000155459 Pde4d protein_coding Interval_137706 chr6 80814278 80814690 + 0 NA Intergenic Intergenic -12654 ENSMUSG00000108040.1 ENSMUSG00000108040 ENSMUST00000204868 Gm43900 TEC Interval_171732 chr9 120569868 120572111 + 0 NA promoter-TSS (ENSMUSG00000025794.9) protein_coding-promoter-TSS (ENSMUSG00000025794.9) -1106 ENSMUSG00000025794.9 ENSMUSG00000025794 ENSMUST00000215063 Rpl14 protein_coding Interval_154915 chr8 25021871 25022557 + 0 NA intron (ENSMUSG00000031556.6, intron 3 of 3) protein_coding-intron (ENSMUSG00000031556.6, intron 3 of 3) 4955 ENSMUSG00000031556.6 ENSMUSG00000031556 ENSMUST00000210536 Tm2d2 protein_coding Interval_51994 chr14 34485999 34486360 + 0 NA intron (ENSMUSG00000021796.15, intron 1 of 4) protein_coding-intron (ENSMUSG00000021796.15, intron 1 of 12) -15536 ENSMUSG00000090779.1 ENSMUSG00000090779 ENSMUST00000171248 Gm17110 antisense Interval_18342 chr10 85050499 85053055 + 0 NA Intergenic Intergenic 50718 ENSMUSG00000050035.7 ENSMUSG00000050035 ENSMUST00000216889 Fhl4 protein_coding Interval_134528 chr6 29347460 29348611 + 0 NA promoter-TSS (ENSMUSG00000029767.16) protein_coding-promoter-TSS (ENSMUSG00000029767.16) -8436 ENSMUSG00000029767.16 ENSMUSG00000029767 ENSMUST00000138523 Calu protein_coding Interval_130080 chr5 124126985 124128094 + 0 NA promoter-TSS (ENSMUSG00000029406.15) protein_coding-promoter-TSS (ENSMUSG00000029406.15) 10228 ENSMUSG00000029404.15 ENSMUSG00000029404 ENSMUST00000196401 Arl6ip4 protein_coding Interval_7539 chr1 132103229 132104587 + 0 NA exon (ENSMUSG00000103966.1, exon 1 of 1) TEC-exon (ENSMUSG00000103966.1, exon 1 of 1) 1543 ENSMUSG00000103966.1 ENSMUSG00000103966 ENSMUST00000193350 Gm37120 TEC Interval_15236 chr10 43570039 43570448 + 0 NA Intergenic Intergenic -8041 ENSMUSG00000047139.9 ENSMUSG00000047139 ENSMUST00000214476 Cd24a protein_coding Interval_3548 chr1 59491259 59491825 + 0 NA exon (ENSMUSG00000097819.1, exon 2 of 2) lincRNA-exon (ENSMUSG00000097819.1, exon 2 of 2) 1063 ENSMUSG00000097819.1 ENSMUSG00000097819 ENSMUST00000180778 Gm26813 lincRNA Interval_166015 chr9 55493113 55493399 + 0 NA intron (ENSMUSG00000032314.14, intron 5 of 7) protein_coding-intron (ENSMUSG00000032314.14, intron 4 of 11) 18864 ENSMUSG00000032314.14 ENSMUSG00000032314 ENSMUST00000142587 Etfa protein_coding Interval_30641 chr11 95633241 95634252 + 0 NA Intergenic Intergenic 11086 ENSMUSG00000084856.1 ENSMUSG00000084856 ENSMUST00000156822 Gm11528 lincRNA Interval_126563 chr5 90298377 90299069 + 0 NA intron (ENSMUSG00000055204.15, intron 3 of 26) protein_coding-intron (ENSMUSG00000055204.15, intron 3 of 33) 67462 ENSMUSG00000055204.15 ENSMUSG00000055204 ENSMUST00000202226 Ankrd17 protein_coding Interval_157214 chr8 67986588 67986980 + 0 NA intron (ENSMUSG00000030465.19, intron 3 of 16) protein_coding-intron (ENSMUSG00000030465.19, intron 2 of 9) -23556 ENSMUSG00000077545.1 ENSMUSG00000077545 ENSMUST00000104357 Gm22018 snoRNA Interval_91056 chr2 34732434 34733069 + 0 NA intron (ENSMUSG00000026867.18, intron 1 of 3) protein_coding-intron (ENSMUSG00000026867.18, intron 1 of 25) -31652 ENSMUSG00000026867.18 ENSMUSG00000026867 ENSMUST00000142436 Gapvd1 protein_coding Interval_18140 chr10 82923123 82923508 + 0 NA Intergenic Intergenic -31029 ENSMUSG00000071151.3 ENSMUSG00000071151 ENSMUST00000095396 Gm4799 processed_pseudogene Interval_125992 chr5 76657298 76658639 + 0 NA promoter-TSS (ENSMUSG00000036377.19) protein_coding-promoter-TSS (ENSMUSG00000036377.19) -362 ENSMUSG00000036377.19 ENSMUSG00000036377 ENSMUST00000149216 C530008M17Rik protein_coding Interval_153363 chr7 143977808 143979523 + 0 NA Intergenic Intergenic -30589 ENSMUSG00000093221.1 ENSMUSG00000093221 ENSMUST00000175480 Mir3105 miRNA Interval_97422 chr2 136016105 136016610 + 0 NA Intergenic Intergenic 9894 ENSMUSG00000064444.1 ENSMUSG00000064444 ENSMUST00000082510 Gm26227 snRNA Interval_61703 chr15 83490897 83491668 + 0 NA TTS (ENSMUSG00000022442.16) protein_coding-TTS (ENSMUSG00000022442.16) 19511 ENSMUSG00000022442.16 ENSMUSG00000022442 ENSMUST00000154401 Ttll1 protein_coding Interval_10757 chr1 174331967 174332203 + 0 NA intron (ENSMUSG00000026531.4, intron 1 of 1) protein_coding-intron (ENSMUSG00000026531.4, intron 1 of 1) 1567 ENSMUSG00000026531.4 ENSMUSG00000026531 ENSMUST00000027816 Mptx1 protein_coding Interval_60565 chr15 75113558 75114325 + 0 NA Intergenic Intergenic -2004 ENSMUSG00000022584.14 ENSMUSG00000022584 ENSMUST00000191451 Ly6c2 protein_coding Interval_137170 chr6 68931964 68932291 + 0 NA Intergenic Intergenic -1393 ENSMUSG00000079543.3 ENSMUSG00000079543 ENSMUST00000114212 Igkv13-85 IG_V_gene Interval_129935 chr5 123149578 123151583 + 0 NA TTS (ENSMUSG00000038384.16) protein_coding-TTS (ENSMUSG00000038384.16) 8387 ENSMUSG00000038384.16 ENSMUSG00000038384 ENSMUST00000162839 Setd1b protein_coding Interval_18096 chr10 82353909 82354814 + 0 NA promoter-TSS (ENSMUSG00000073427.4) protein_coding-promoter-TSS (ENSMUSG00000073427.4) 106 ENSMUSG00000073427.4 ENSMUSG00000073427 ENSMUST00000165906 Gm4924 protein_coding Interval_168976 chr9 89900260 89900937 + 0 NA Intergenic Intergenic -9314 ENSMUSG00000032356.12 ENSMUSG00000032356 ENSMUST00000190073 Rasgrf1 protein_coding Interval_87629 chr19 53821014 53822056 + 0 NA exon (ENSMUSG00000089679.1, exon 2 of 2) antisense-exon (ENSMUSG00000089679.1, exon 2 of 2) 3593 ENSMUSG00000089679.1 ENSMUSG00000089679 ENSMUST00000162724 Gm16299 antisense Interval_73546 chr17 40223297 40223678 + 0 NA intron (ENSMUSG00000025433.7, intron 7 of 7) protein_coding-intron (ENSMUSG00000025433.7, intron 7 of 7) -14847 ENSMUSG00000031233.6 ENSMUSG00000031233 ENSMUST00000033585 Pgk2 protein_coding Interval_87713 chr19 55332503 55333571 + 0 NA TTS (ENSMUSG00000024983.10) protein_coding-TTS (ENSMUSG00000024983.10) 16710 ENSMUSG00000024983.10 ENSMUSG00000024983 ENSMUST00000224396 Vti1a protein_coding Interval_38131 chr12 75859175 75860874 + 0 NA intron (ENSMUSG00000063450.14, intron 2 of 12) protein_coding-intron (ENSMUSG00000063450.14, intron 2 of 115) 41674 ENSMUSG00000063450.14 ENSMUSG00000063450 ENSMUST00000151286 Syne2 protein_coding Interval_148319 chr7 80483335 80483560 + 0 NA intron (ENSMUSG00000030528.12, intron 11 of 14) protein_coding-intron (ENSMUSG00000030528.12, intron 12 of 21) -22623 ENSMUSG00000030528.12 ENSMUSG00000030528 ENSMUST00000205584 Blm protein_coding Interval_8979 chr1 152868720 152869063 + 0 NA intron (ENSMUSG00000042772.15, intron 2 of 22) protein_coding-intron (ENSMUSG00000042772.15, intron 2 of 22) 11407 ENSMUSG00000100394.1 ENSMUSG00000100394 ENSMUST00000185888 Gm28791 sense_intronic Interval_113924 chr4 59880785 59881523 + 0 NA intron (ENSMUSG00000028385.14, intron 4 of 8) protein_coding-intron (ENSMUSG00000028385.14, intron 4 of 8) -3540 ENSMUSG00000028385.14 ENSMUSG00000028385 ENSMUST00000143185 Snx30 protein_coding Interval_167809 chr9 72812180 72813475 + 0 NA intron (ENSMUSG00000036030.9, intron 2 of 19) protein_coding-intron (ENSMUSG00000036030.9, intron 2 of 19) 14736 ENSMUSG00000098471.1 ENSMUSG00000098471 ENSMUST00000183677 Gm27203 processed_pseudogene Interval_48223 chr13 97281234 97283420 + 0 NA promoter-TSS (ENSMUSG00000097932.2) lincRNA-promoter-TSS (ENSMUSG00000097932.2) -856 ENSMUSG00000097932.2 ENSMUSG00000097932 ENSMUST00000181148 C430039J16Rik lincRNA Interval_144629 chr7 27227831 27228999 + 0 NA exon (ENSMUSG00000003752.9, exon 1 of 7) protein_coding-exon (ENSMUSG00000003752.9, exon 1 of 7) 246 ENSMUSG00000003752.9 ENSMUSG00000003752 ENSMUST00000206441 Itpkc protein_coding Interval_125558 chr5 70896435 70897175 + 0 NA Intergenic Intergenic -54491 ENSMUSG00000001260.10 ENSMUSG00000001260 ENSMUST00000200126 Gabrg1 protein_coding Interval_87804 chr19 55997595 55998969 + 0 NA Intergenic Intergenic -14247 ENSMUSG00000117833.1 ENSMUSG00000117833 ENSMUST00000236015 Gm50135 processed_pseudogene Interval_117295 chr4 122781886 122782199 + 0 NA intron (ENSMUSG00000083494.1, intron 1 of 3) unprocessed_pseudogene-intron (ENSMUSG00000083494.1, intron 1 of 3) 11707 ENSMUSG00000083494.1 ENSMUSG00000083494 ENSMUST00000119988 Gm12873 unprocessed_pseudogene Interval_14945 chr10 41375842 41377423 + 0 NA intron (ENSMUSG00000091415.5, intron 20 of 39) protein_coding-intron (ENSMUSG00000091415.5, intron 20 of 39) 4249 ENSMUSG00000111601.1 ENSMUSG00000111601 ENSMUST00000216029 Gm18986 processed_pseudogene Interval_149396 chr7 98119334 98121060 + 0 NA promoter-TSS (ENSMUSG00000030761.16) protein_coding-promoter-TSS (ENSMUSG00000030761.16) 25305 ENSMUSG00000074006.3 ENSMUSG00000074006 ENSMUST00000098281 Omp protein_coding Interval_128471 chr5 113510945 113511153 + 0 NA intron (ENSMUSG00000063430.9, intron 1 of 1) protein_coding-intron (ENSMUSG00000063430.9, intron 1 of 8) -67739 ENSMUSG00000063430.9 ENSMUSG00000063430 ENSMUST00000198673 Wscd2 protein_coding Interval_100144 chr2 167313396 167315274 + 0 NA promoter-TSS (ENSMUSG00000017929.13) protein_coding-promoter-TSS (ENSMUSG00000017929.13) -480 ENSMUSG00000017929.13 ENSMUSG00000017929 ENSMUST00000133557 B4galt5 protein_coding Interval_133032 chr5 149417150 149417791 + 0 NA intron (ENSMUSG00000029659.16, intron 1 of 4) protein_coding-intron (ENSMUSG00000029659.16, intron 1 of 4) 5698 ENSMUSG00000029659.16 ENSMUSG00000029659 ENSMUST00000201083 Medag protein_coding Interval_114773 chr4 85161907 85163559 + 0 NA Intergenic Intergenic -13794 ENSMUSG00000084267.1 ENSMUSG00000084267 ENSMUST00000119153 Gm12417 processed_pseudogene Interval_18146 chr10 83014316 83014584 + 0 NA intron (ENSMUSG00000034612.7, intron 1 of 2) protein_coding-intron (ENSMUSG00000034612.7, intron 1 of 2) 17245 ENSMUSG00000112084.1 ENSMUSG00000112084 ENSMUST00000218071 Gm10773 TEC Interval_158865 chr8 87538353 87538594 + 0 NA Intergenic Intergenic -25380 ENSMUSG00000069971.5 ENSMUSG00000069971 ENSMUST00000093342 4933402J07Rik protein_coding Interval_170780 chr9 110716655 110717384 + 0 NA Intergenic Intergenic 7008 ENSMUSG00000019659.8 ENSMUSG00000019659 ENSMUST00000196542 Ccdc12 protein_coding Interval_71330 chr17 22335574 22335892 + 0 NA Intergenic Intergenic -2739 ENSMUSG00000117164.1 ENSMUSG00000117164 ENSMUST00000232725 Gm49951 processed_pseudogene Interval_127343 chr5 103276955 103277630 + 0 NA intron (ENSMUSG00000104956.1, intron 4 of 6) lincRNA-intron (ENSMUSG00000104956.1, intron 4 of 6) 3383 ENSMUSG00000104688.1 ENSMUSG00000104688 ENSMUST00000196923 Gm18702 processed_pseudogene Interval_159053 chr8 89112690 89112911 + 0 NA Intergenic Intergenic 34258 ENSMUSG00000094790.2 ENSMUSG00000094790 ENSMUST00000177870 Gm6625 processed_pseudogene Interval_56004 chr14 104027048 104027834 + 0 NA promoter-TSS (ENSMUSG00000115727.1) lincRNA-promoter-TSS (ENSMUSG00000115727.1) -299 ENSMUSG00000115727.1 ENSMUSG00000115727 ENSMUST00000227414 4930432J09Rik lincRNA Interval_44091 chr13 40825957 40826997 + 0 NA Intergenic Intergenic 12179 ENSMUSG00000114263.1 ENSMUSG00000114263 ENSMUST00000225513 Gm7201 processed_pseudogene Interval_84652 chr19 14670418 14671274 + 0 NA Intergenic Intergenic 12179 ENSMUSG00000103488.1 ENSMUSG00000103488 ENSMUST00000193515 Gm37997 TEC Interval_14670 chr10 38609529 38610704 + 0 NA Intergenic Intergenic 5365 ENSMUSG00000094521.1 ENSMUSG00000094521 ENSMUST00000177920 Gm22911 snRNA Interval_36975 chr12 55825727 55826333 + 0 NA Intergenic Intergenic -4877 ENSMUSG00000092949.1 ENSMUSG00000092949 ENSMUST00000175208 Gm23394 miRNA Interval_74383 chr17 49787566 49789145 + 0 NA intron (ENSMUSG00000023999.14, intron 13 of 22) protein_coding-intron (ENSMUSG00000023999.14, intron 13 of 22) 33470 ENSMUSG00000090012.1 ENSMUSG00000090012 ENSMUST00000159971 Gm16555 antisense Interval_172014 chr9 123506950 123507944 + 0 NA intron (ENSMUSG00000025239.3, intron 2 of 3) protein_coding-intron (ENSMUSG00000025239.3, intron 2 of 7) -22312 ENSMUSG00000025240.10 ENSMUSG00000025240 ENSMUST00000215004 Sacm1l protein_coding Interval_108535 chr3 128161901 128162089 + 0 NA intron (ENSMUSG00000105816.4, intron 2 of 5) processed_transcript-intron (ENSMUSG00000105816.4, intron 2 of 2) -28635 ENSMUSG00000105816.4 ENSMUSG00000105816 ENSMUST00000198275 D030025E07Rik processed_transcript Interval_128156 chr5 111366402 111366692 + 0 NA intron (ENSMUSG00000050017.11, intron 7 of 10) protein_coding-intron (ENSMUSG00000050017.11, intron 7 of 11) 21742 ENSMUSG00000104559.1 ENSMUSG00000104559 ENSMUST00000199149 Gm43118 antisense Interval_90692 chr2 31948472 31948775 + 0 NA Intergenic Intergenic -13296 ENSMUSG00000001864.13 ENSMUSG00000001864 ENSMUST00000145137 Aif1l protein_coding Interval_105138 chr3 82364564 82365595 + 0 NA intron (ENSMUSG00000033900.13, intron 4 of 13) protein_coding-intron (ENSMUSG00000033900.13, intron 4 of 13) -14994 ENSMUSG00000033900.13 ENSMUSG00000033900 ENSMUST00000195793 Map9 protein_coding Interval_27093 chr11 62834198 62834399 + 0 NA intron (ENSMUSG00000047821.16, intron 1 of 3) protein_coding-intron (ENSMUSG00000047821.16, intron 3 of 5) -12825 ENSMUSG00000090173.8 ENSMUSG00000090173 ENSMUST00000127646 Fbxw10 protein_coding Interval_109055 chr3 135492322 135492537 + 0 NA intron (ENSMUSG00000028164.15, intron 1 of 2) protein_coding-intron (ENSMUSG00000028164.15, intron 1 of 16) -3224 ENSMUSG00000083045.1 ENSMUSG00000083045 ENSMUST00000120489 Gm16100 processed_pseudogene Interval_172068 chrX 5435621 5436252 + 0 NA Intergenic Intergenic 33329 ENSMUSG00000044597.4 ENSMUSG00000044597 ENSMUST00000058404 Mycs protein_coding Interval_13275 chr10 13964560 13967752 + 0 NA promoter-TSS (ENSMUSG00000015501.10) protein_coding-promoter-TSS (ENSMUSG00000015501.10) -868 ENSMUSG00000015501.10 ENSMUSG00000015501 ENSMUST00000191464 Hivep2 protein_coding Interval_150699 chr7 113513061 113514595 + 0 NA promoter-TSS (ENSMUSG00000030759.16) protein_coding-promoter-TSS (ENSMUSG00000030759.16) -34 ENSMUSG00000030759.16 ENSMUSG00000030759 ENSMUST00000151133 Far1 protein_coding Interval_50813 chr14 19988242 19988991 + 0 NA Intergenic Intergenic -11432 ENSMUSG00000043004.13 ENSMUSG00000043004 ENSMUST00000161247 Gng2 protein_coding Interval_169475 chr9 97976473 97976940 + 0 NA intron (ENSMUSG00000032452.12, intron 1 of 16) protein_coding-intron (ENSMUSG00000032452.12, intron 1 of 17) -26714 ENSMUSG00000090255.7 ENSMUSG00000090255 ENSMUST00000162911 4921534H16Rik antisense Interval_441 chr1 5309245 5309453 + 0 NA exon (ENSMUSG00000104046.1, exon 1 of 1) TEC-exon (ENSMUSG00000104046.1, exon 1 of 1) 1610 ENSMUSG00000104046.1 ENSMUSG00000104046 ENSMUST00000193241 Gm37567 TEC Interval_167584 chr9 70678481 70680002 + 0 NA exon (ENSMUSG00000054693.14, exon 1 of 16) protein_coding-exon (ENSMUSG00000054693.14, exon 1 of 16) -22094 ENSMUSG00000042444.10 ENSMUSG00000042444 ENSMUST00000214293 Mindy2 protein_coding Interval_70177 chr17 5980854 5981107 + 0 NA intron (ENSMUSG00000023805.17, intron 1 of 16) protein_coding-intron (ENSMUSG00000023805.17, intron 1 of 25) -27054 ENSMUSG00000023805.17 ENSMUSG00000023805 ENSMUST00000126881 Synj2 protein_coding Interval_20311 chr10 116796387 116796866 + 0 NA intron (ENSMUSG00000034057.8, intron 16 of 24) protein_coding-intron (ENSMUSG00000034057.8, intron 16 of 24) 67373 ENSMUSG00000112924.1 ENSMUSG00000112924 ENSMUST00000218193 4930579P08Rik lincRNA Interval_111976 chr4 32929818 32930337 + 0 NA intron (ENSMUSG00000040183.13, intron 1 of 15) protein_coding-intron (ENSMUSG00000040183.13, intron 1 of 14) -34811 ENSMUSG00000094344.1 ENSMUSG00000094344 ENSMUST00000180255 Gm11942 processed_pseudogene Interval_65763 chr16 28038160 28039511 + 0 NA Intergenic Intergenic -68490 ENSMUSG00000116978.1 ENSMUSG00000116978 ENSMUST00000231476 Gm49765 processed_pseudogene Interval_147112 chr7 63321866 63322666 + 0 NA Intergenic Intergenic -109697 ENSMUSG00000030525.8 ENSMUSG00000030525 ENSMUST00000208304 Chrna7 protein_coding Interval_14673 chr10 38800468 38801558 + 0 NA Intergenic Intergenic 20766 ENSMUSG00000094311.1 ENSMUSG00000094311 ENSMUST00000179279 Rfpl4b protein_coding Interval_105595 chr3 87986800 87988219 + 0 NA TTS (ENSMUSG00000004892.13) protein_coding-TTS (ENSMUSG00000004892.13) 6946 ENSMUSG00000004892.13 ENSMUSG00000004892 ENSMUST00000194193 Bcan protein_coding Interval_151307 chr7 120875029 120875914 + 0 NA promoter-TSS (ENSMUSG00000035064.17) protein_coding-promoter-TSS (ENSMUSG00000035064.17) -173 ENSMUSG00000085118.2 ENSMUSG00000085118 ENSMUST00000141810 Gm15774 antisense Interval_171483 chr9 118694027 118695003 + 0 NA intron (ENSMUSG00000039115.13, intron 2 of 5) protein_coding-intron (ENSMUSG00000039115.13, intron 14 of 27) -104320 ENSMUSG00000110676.1 ENSMUSG00000110676 ENSMUST00000212679 Gm45897 lincRNA Interval_119579 chr4 138479875 138480141 + 0 NA Intergenic Intergenic 25694 ENSMUSG00000046447.3 ENSMUSG00000046447 ENSMUST00000050918 Camk2n1 protein_coding Interval_18740 chr10 89823876 89824397 + 0 NA Intergenic Intergenic -2690 ENSMUSG00000093967.1 ENSMUSG00000093967 ENSMUST00000179942 Gm26180 snRNA Interval_96481 chr2 124792682 124792868 + 0 NA Intergenic Intergenic 84120 ENSMUSG00000087450.1 ENSMUSG00000087450 ENSMUST00000137397 Gm13994 lincRNA Interval_21848 chr11 4727887 4728241 + 0 NA promoter-TSS (ENSMUSG00000009076.10) protein_coding-promoter-TSS (ENSMUSG00000009076.10) 18714 ENSMUSG00000009075.2 ENSMUSG00000009075 ENSMUST00000009219 Cabp7 protein_coding Interval_143600 chr7 13054019 13055083 + 0 NA promoter-TSS (ENSMUSG00000030380.17) protein_coding-promoter-TSS (ENSMUSG00000030380.17) -2171 ENSMUSG00000030380.17 ENSMUSG00000030380 ENSMUST00000183176 Mzf1 protein_coding Interval_99703 chr2 164402738 164403490 + 0 NA promoter-TSS (ENSMUSG00000017007.9) protein_coding-promoter-TSS (ENSMUSG00000017007.9) -27 ENSMUSG00000017007.9 ENSMUSG00000017007 ENSMUST00000109356 Rbpjl protein_coding Interval_57881 chr15 24555048 24555340 + 0 NA Intergenic Intergenic 50284 ENSMUSG00000115004.1 ENSMUSG00000115004 ENSMUST00000226982 Gm48920 processed_pseudogene Interval_56157 chr14 108314805 108315015 + 0 NA Intergenic Intergenic -64654 ENSMUSG00000092834.1 ENSMUSG00000092834 ENSMUST00000175093 Gm24818 miRNA Interval_138961 chr6 93848934 93849778 + 0 NA intron (ENSMUSG00000045095.16, intron 2 of 24) protein_coding-intron (ENSMUSG00000045095.16, intron 2 of 21) -41259 ENSMUSG00000089069.1 ENSMUSG00000089069 ENSMUST00000158444 Gm22840 snoRNA Interval_107738 chr3 112430935 112431555 + 0 NA Intergenic Intergenic -99473 ENSMUSG00000105073.1 ENSMUSG00000105073 ENSMUST00000197055 Gm9317 processed_pseudogene Interval_121231 chr4 154246183 154247634 + 0 NA intron (ENSMUSG00000057751.14, intron 2 of 27) protein_coding-intron (ENSMUSG00000057751.14, intron 5 of 36) -2388 ENSMUSG00000057751.14 ENSMUSG00000057751 ENSMUST00000142110 Megf6 protein_coding Interval_126767 chr5 92767624 92769819 + 0 NA intron (ENSMUSG00000029381.16, intron 1 of 11) protein_coding-intron (ENSMUSG00000029381.16, intron 1 of 10) 19841 ENSMUSG00000089268.1 ENSMUSG00000089268 ENSMUST00000158643 Mir1961 miRNA Interval_2515 chr1 39906877 39907433 + 0 NA intron (ENSMUSG00000026074.15, intron 2 of 31) protein_coding-intron (ENSMUSG00000026074.15, intron 2 of 30) 5976 ENSMUSG00000026074.15 ENSMUSG00000026074 ENSMUST00000191657 Map4k4 protein_coding Interval_99826 chr2 165159151 165159480 + 0 NA promoter-TSS (ENSMUSG00000086630.1) antisense-promoter-TSS (ENSMUSG00000086630.1) -97 ENSMUSG00000086630.1 ENSMUSG00000086630 ENSMUST00000124728 Gm14397 antisense Interval_138542 chr6 89046722 89047776 + 0 NA intron (ENSMUSG00000055403.13, intron 1 of 2) lincRNA-intron (ENSMUSG00000055403.13, intron 1 of 2) -93745 ENSMUSG00000090254.7 ENSMUSG00000090254 ENSMUST00000160361 Gm1965 lincRNA Interval_90011 chr2 27320953 27322215 + 0 NA intron (ENSMUSG00000009621.18, intron 2 of 29) protein_coding-intron (ENSMUSG00000009621.18, intron 3 of 27) -5120 ENSMUSG00000086669.1 ENSMUSG00000086669 ENSMUST00000156020 AA645442 antisense Interval_40367 chr12 104432745 104434538 + 0 NA Intergenic Intergenic -14241 ENSMUSG00000077398.1 ENSMUSG00000077398 ENSMUST00000104210 Gm24334 snoRNA Interval_6124 chr1 97698825 97699232 + 0 NA Intergenic Intergenic 17518 ENSMUSG00000040648.14 ENSMUSG00000040648 ENSMUST00000152788 Ppip5k2 protein_coding Interval_69930 chr17 3273576 3275529 + 0 NA intron (ENSMUSG00000116874.1, intron 2 of 3) lincRNA-intron (ENSMUSG00000116874.1, intron 2 of 3) 8655 ENSMUSG00000116874.1 ENSMUSG00000116874 ENSMUST00000231652 Gm34035 lincRNA Interval_128350 chr5 112680204 112680471 + 0 NA intron (ENSMUSG00000104807.1, intron 2 of 2) lincRNA-intron (ENSMUSG00000104807.1, intron 2 of 2) 4962 ENSMUSG00000104807.1 ENSMUSG00000104807 ENSMUST00000197981 Gm42865 lincRNA Interval_42473 chr13 13965079 13965908 + 0 NA promoter-TSS (ENSMUSG00000039242.10) protein_coding-promoter-TSS (ENSMUSG00000039242.10) 5844 ENSMUSG00000096192.2 ENSMUSG00000096192 ENSMUST00000221021 Gm18856 transcribed_processed_pseudogene Interval_55694 chr14 99074716 99075245 + 0 NA TTS (ENSMUSG00000022070.7) protein_coding-TTS (ENSMUSG00000022070.7) 3703 ENSMUSG00000033166.11 ENSMUSG00000033166 ENSMUST00000227001 Dis3 protein_coding Interval_70361 chr17 8988039 8988740 + 0 NA promoter-TSS (ENSMUSG00000023873.13) protein_coding-promoter-TSS (ENSMUSG00000023873.13) 47 ENSMUSG00000023873.13 ENSMUSG00000023873 ENSMUST00000136954 1700010I14Rik protein_coding Interval_11725 chr1 184897018 184897977 + 0 NA exon (ENSMUSG00000026620.11, exon 18 of 18) protein_coding-exon (ENSMUSG00000026620.11, exon 18 of 18) -14279 ENSMUSG00000039349.5 ENSMUSG00000039349 ENSMUST00000048308 C130074G19Rik protein_coding Interval_126215 chr5 82543697 82544034 + 0 NA Intergenic Intergenic 207014 ENSMUSG00000106926.1 ENSMUSG00000106926 ENSMUST00000200912 Rpl7-ps7 processed_pseudogene Interval_137290 chr6 71095936 71096693 + 0 NA Intergenic Intergenic 10197 ENSMUSG00000107446.1 ENSMUSG00000107446 ENSMUST00000203194 Gm43906 TEC Interval_47391 chr13 83105631 83106063 + 0 NA intron (ENSMUSG00000114372.1, intron 3 of 3) lincRNA-intron (ENSMUSG00000114372.1, intron 3 of 3) 40390 ENSMUSG00000114372.1 ENSMUSG00000114372 ENSMUST00000225970 2310067P03Rik lincRNA Interval_129183 chr5 118039273 118041136 + 0 NA intron (ENSMUSG00000029359.13, intron 1 of 7) protein_coding-intron (ENSMUSG00000029359.13, intron 1 of 7) 4173 ENSMUSG00000029359.13 ENSMUSG00000029359 ENSMUST00000145526 Tesc protein_coding Interval_4709 chr1 77471284 77471616 + 0 NA intron (ENSMUSG00000026235.14, intron 2 of 15) protein_coding-intron (ENSMUSG00000026235.14, intron 3 of 17) 25318 ENSMUSG00000099141.1 ENSMUSG00000099141 ENSMUST00000184495 Mir6352 miRNA Interval_18126 chr10 82836661 82837162 + 0 NA intron (ENSMUSG00000020250.10, intron 1 of 14) protein_coding-intron (ENSMUSG00000020250.10, intron 1 of 14) 15736 ENSMUSG00000112889.1 ENSMUSG00000112889 ENSMUST00000220118 Gm47073 TEC Interval_43455 chr13 31327617 31328300 + 0 NA exon (ENSMUSG00000087662.2, exon 3 of 4) lincRNA-exon (ENSMUSG00000087662.2, exon 3 of 4) 2809 ENSMUSG00000087662.2 ENSMUSG00000087662 ENSMUST00000129791 Gm11373 lincRNA Interval_164203 chr9 32456296 32456897 + 0 NA intron (ENSMUSG00000016087.13, intron 4 of 6) protein_coding-intron (ENSMUSG00000016087.13, intron 4 of 8) -9668 ENSMUSG00000064492.1 ENSMUSG00000064492 ENSMUST00000082558 Gm22060 snRNA Interval_123987 chr5 37036762 37037333 + 0 NA intron (ENSMUSG00000063646.18, intron 2 of 2) protein_coding-intron (ENSMUSG00000063646.18, intron 1 of 2) 4599 ENSMUSG00000097686.1 ENSMUSG00000097686 ENSMUST00000180816 Gm26647 antisense Interval_80310 chr18 39091546 39091820 + 0 NA intron (ENSMUSG00000036452.18, intron 1 of 22) protein_coding-intron (ENSMUSG00000036452.18, intron 1 of 22) -97491 ENSMUSG00000086991.1 ENSMUSG00000086991 ENSMUST00000131421 Gm15334 antisense Interval_37159 chr12 59072198 59072517 + 0 NA TTS (ENSMUSG00000020994.5) protein_coding-TTS (ENSMUSG00000020994.5) 5414 ENSMUSG00000020994.5 ENSMUSG00000020994 ENSMUST00000217676 Pnn protein_coding Interval_36958 chr12 55592956 55593335 + 0 NA Intergenic Intergenic -6282 ENSMUSG00000045440.4 ENSMUSG00000045440 ENSMUST00000051857 Insm2 protein_coding Interval_106569 chr3 97332095 97332406 + 0 NA Intergenic Intergenic -34333 ENSMUSG00000038256.15 ENSMUSG00000038256 ENSMUST00000127319 Bcl9 protein_coding Interval_122606 chr5 24169783 24170643 + 0 NA TTS (ENSMUSG00000048439.15) protein_coding-TTS (ENSMUSG00000048439.15) 2705 ENSMUSG00000048439.15 ENSMUSG00000048439 ENSMUST00000124150 Nupl2 protein_coding Interval_150575 chr7 112571970 112572803 + 0 NA intron (ENSMUSG00000030770.15, intron 1 of 5) protein_coding-intron (ENSMUSG00000030770.15, intron 6 of 12) -36703 ENSMUSG00000085049.1 ENSMUSG00000085049 ENSMUST00000154848 Parvaos antisense Interval_97391 chr2 135717106 135718284 + 0 NA intron (ENSMUSG00000039943.16, intron 1 of 2) protein_coding-intron (ENSMUSG00000039943.16, intron 1 of 28) -24135 ENSMUSG00000039943.16 ENSMUSG00000039943 ENSMUST00000147122 Plcb4 protein_coding Interval_27825 chr11 70237348 70238404 + 0 NA promoter-TSS (ENSMUSG00000020831.18) protein_coding-promoter-TSS (ENSMUSG00000020831.18) 36 ENSMUSG00000020831.18 ENSMUSG00000020831 ENSMUST00000150504 0610010K14Rik protein_coding Interval_79330 chr18 30603288 30603578 + 0 NA Intergenic Intergenic 5457 ENSMUSG00000117526.1 ENSMUSG00000117526 ENSMUST00000235078 Gm41780 processed_pseudogene Interval_56194 chr14 111778074 111778467 + 0 NA Intergenic Intergenic 67672 ENSMUSG00000118534.1 ENSMUSG00000118534 ENSMUST00000238868 AC102368.1 processed_pseudogene Interval_98974 chr2 156429936 156430344 + 0 NA intron (ENSMUSG00000027624.20, intron 1 of 21) protein_coding-intron (ENSMUSG00000027624.20, intron 1 of 21) 17468 ENSMUSG00000086872.1 ENSMUSG00000086872 ENSMUST00000142310 Gm14225 antisense Interval_23599 chr11 23678783 23679701 + 0 NA intron (ENSMUSG00000020280.12, intron 4 of 17) protein_coding-intron (ENSMUSG00000020280.12, intron 4 of 17) 12731 ENSMUSG00000020280.12 ENSMUSG00000020280 ENSMUST00000142287 Pus10 protein_coding Interval_168813 chr9 87419284 87419781 + 0 NA Intergenic Intergenic 25282 ENSMUSG00000099385.1 ENSMUSG00000099385 ENSMUST00000188230 Gm9540 processed_pseudogene Interval_117576 chr4 124766625 124767125 + 0 NA intron (ENSMUSG00000028894.18, intron 7 of 24) protein_coding-intron (ENSMUSG00000028894.18, intron 7 of 23) -15521 ENSMUSG00000086589.1 ENSMUSG00000086589 ENSMUST00000131381 Gm12915 processed_transcript Interval_104929 chr3 79094278 79094922 + 0 NA intron (ENSMUSG00000062232.14, intron 12 of 29) protein_coding-intron (ENSMUSG00000062232.14, intron 6 of 23) -101774 ENSMUSG00000064693.1 ENSMUSG00000064693 ENSMUST00000082759 Gm24150 snRNA Interval_36755 chr12 53072412 53072663 + 0 NA intron (ENSMUSG00000061603.8, intron 10 of 11) protein_coding-intron (ENSMUSG00000061603.8, intron 11 of 13) -25711 ENSMUSG00000070192.1 ENSMUSG00000070192 ENSMUST00000093682 n-R5s58 rRNA Interval_137664 chr6 78239488 78239760 + 0 NA Intergenic Intergenic 23746 ENSMUSG00000108045.1 ENSMUSG00000108045 ENSMUST00000075809 Gm5576 processed_pseudogene Interval_8879 chr1 151754835 151756138 + 0 NA promoter-TSS (ENSMUSG00000100594.1) lincRNA-promoter-TSS (ENSMUSG00000100594.1) 26 ENSMUSG00000043019.12 ENSMUSG00000043019 ENSMUST00000191070 Edem3 protein_coding Interval_94507 chr2 91740579 91742504 + 0 NA intron (ENSMUSG00000040506.16, intron 1 of 8) protein_coding-intron (ENSMUSG00000040506.16, intron 1 of 17) 11359 ENSMUSG00000040506.16 ENSMUSG00000040506 ENSMUST00000142224 Ambra1 protein_coding Interval_159968 chr8 105471060 105471881 + 0 NA promoter-TSS (ENSMUSG00000014846.12) protein_coding-promoter-TSS (ENSMUSG00000014846.12) -2060 ENSMUSG00000014846.12 ENSMUSG00000014846 ENSMUST00000176419 Tppp3 protein_coding Interval_88615 chr2 6747723 6749893 + 0 NA intron (ENSMUSG00000002107.18, intron 2 of 13) protein_coding-intron (ENSMUSG00000002107.18, intron 3 of 15) 123789 ENSMUSG00000002107.18 ENSMUSG00000002107 ENSMUST00000182037 Celf2 protein_coding Interval_67063 chr16 42369147 42369896 + 0 NA Intergenic Intergenic -66052 ENSMUSG00000098300.1 ENSMUSG00000098300 ENSMUST00000184886 Mir6540 miRNA Interval_52637 chr14 48164734 48165515 + 0 NA intron (ENSMUSG00000021846.9, intron 1 of 2) protein_coding-intron (ENSMUSG00000021846.9, intron 1 of 5) -19882 ENSMUSG00000021846.9 ENSMUSG00000021846 ENSMUST00000081029 Peli2 protein_coding Interval_53932 chr14 63485038 63485269 + 0 NA Intergenic Intergenic -8546 ENSMUSG00000090374.1 ENSMUSG00000090374 ENSMUST00000164515 Gm17232 antisense Interval_46130 chr13 61897036 61898363 + 0 NA Intergenic Intergenic -19850 ENSMUSG00000113887.1 ENSMUSG00000113887 ENSMUST00000222548 Gm35619 processed_pseudogene Interval_174846 chrX 169740499 169740829 + 0 NA intron (ENSMUSG00000035299.16, intron 1 of 9) protein_coding-intron (ENSMUSG00000035299.16, intron 1 of 9) 38893 ENSMUSG00000055357.8 ENSMUSG00000055357 ENSMUST00000112102 4933400A11Rik protein_coding Interval_105031 chr3 79910424 79910729 + 0 NA intron (ENSMUSG00000027955.16, intron 2 of 2) protein_coding-intron (ENSMUSG00000027955.16, intron 2 of 3) -23770 ENSMUSG00000102191.1 ENSMUSG00000102191 ENSMUST00000195082 Gm36569 antisense Interval_13080 chr10 11211074 11211482 + 0 NA intron (ENSMUSG00000090112.8, intron 19 of 20) protein_coding-intron (ENSMUSG00000090112.8, intron 28 of 29) 1701 ENSMUSG00000090070.1 ENSMUSG00000090070 ENSMUST00000161579 Gm16577 antisense Interval_92753 chr2 65131508 65131760 + 0 NA intron (ENSMUSG00000034903.18, intron 5 of 14) protein_coding-intron (ENSMUSG00000034903.18, intron 4 of 12) -107122 ENSMUSG00000086881.1 ENSMUSG00000086881 ENSMUST00000137582 Gm13594 antisense Interval_21796 chr11 4413810 4414071 + 0 NA intron (ENSMUSG00000020419.11, intron 7 of 10) protein_coding-intron (ENSMUSG00000020419.11, intron 8 of 11) 13322 ENSMUSG00000020419.11 ENSMUSG00000020419 ENSMUST00000124249 Hormad2 protein_coding Interval_84973 chr19 20797641 20797969 + 0 NA intron (ENSMUSG00000024749.9, intron 3 of 6) protein_coding-intron (ENSMUSG00000024749.9, intron 17 of 20) 16862 ENSMUSG00000024749.9 ENSMUSG00000024749 ENSMUST00000235546 Tmc1 protein_coding Interval_47067 chr13 75138411 75138853 + 0 NA Intergenic Intergenic 27814 ENSMUSG00000021587.5 ENSMUSG00000021587 ENSMUST00000222727 Pcsk1 protein_coding Interval_7272 chr1 128349453 128349658 + 0 NA intron (ENSMUSG00000026355.11, intron 4 of 15) protein_coding-intron (ENSMUSG00000026355.11, intron 4 of 16) -3513 ENSMUSG00000026355.11 ENSMUSG00000026355 ENSMUST00000188755 Mcm6 protein_coding Interval_9987 chr1 164576945 164577681 + 0 NA exon (ENSMUSG00000102389.1, exon 1 of 1) TEC-exon (ENSMUSG00000102389.1, exon 1 of 1) 1858 ENSMUSG00000102389.1 ENSMUSG00000102389 ENSMUST00000191913 D630023O14Rik TEC Interval_162273 chr8 126596131 126596567 + 0 NA Intergenic Intergenic -2363 ENSMUSG00000051495.7 ENSMUSG00000051495 ENSMUST00000054960 Irf2bp2 protein_coding Interval_60944 chr15 78065644 78066780 + 0 NA intron (ENSMUSG00000019146.2, intron 1 of 3) protein_coding-intron (ENSMUSG00000019146.2, intron 1 of 3) -53494 ENSMUSG00000092375.1 ENSMUSG00000092375 ENSMUST00000174277 A730060N03Rik antisense Interval_132706 chr5 147299094 147300156 + 0 NA Intergenic Intergenic 7645 ENSMUSG00000029646.3 ENSMUSG00000029646 ENSMUST00000031650 Cdx2 protein_coding Interval_47640 chr13 90604390 90604621 + 0 NA Intergenic Intergenic 21176 ENSMUSG00000094277.2 ENSMUSG00000094277 ENSMUST00000179654 Gm21726 processed_pseudogene Interval_40440 chr12 104898892 104899438 + 0 NA Intergenic Intergenic 27524 ENSMUSG00000100975.2 ENSMUSG00000100975 ENSMUST00000185486 Gm28875 lincRNA Interval_30624 chr11 95540376 95541535 + 0 NA Intergenic Intergenic -26385 ENSMUSG00000046719.7 ENSMUSG00000046719 ENSMUST00000058866 Nxph3 protein_coding Interval_133140 chr5 150137907 150138343 + 0 NA intron (ENSMUSG00000056602.12, intron 1 of 6) protein_coding-intron (ENSMUSG00000056602.12, intron 1 of 4) -55330 ENSMUSG00000107384.1 ENSMUSG00000107384 ENSMUST00000202037 Gm42557 antisense Interval_18463 chr10 86337769 86338803 + 0 NA intron (ENSMUSG00000020044.13, intron 1 of 2) protein_coding-intron (ENSMUSG00000020044.13, intron 1 of 4) 37732 ENSMUSG00000020044.13 ENSMUSG00000020044 ENSMUST00000132307 Timp3 protein_coding Interval_160262 chr8 107535658 107535980 + 0 NA intron (ENSMUSG00000031930.11, intron 8 of 22) protein_coding-intron (ENSMUSG00000031930.11, intron 9 of 23) -15425 ENSMUSG00000065439.1 ENSMUSG00000065439 ENSMUST00000083505 Mir140 miRNA Interval_113424 chr4 54925871 54927464 + 0 NA Intergenic Intergenic -18381 ENSMUSG00000060206.11 ENSMUSG00000060206 ENSMUST00000079605 Zfp462 protein_coding Interval_102796 chr3 31094064 31095890 + 0 NA promoter-TSS (ENSMUSG00000027660.16) protein_coding-promoter-TSS (ENSMUSG00000027660.16) -84 ENSMUSG00000027660.16 ENSMUSG00000027660 ENSMUST00000118204 Skil protein_coding Interval_173651 chrX 101486658 101487167 + 0 NA Intergenic Intergenic 7564 ENSMUSG00000083897.1 ENSMUSG00000083897 ENSMUST00000119596 Gm14843 processed_pseudogene Interval_78217 chr18 10253435 10253752 + 0 NA Intergenic Intergenic -8614 ENSMUSG00000117552.1 ENSMUSG00000117552 ENSMUST00000234693 Gm5686 processed_pseudogene Interval_6865 chr1 120204828 120205228 + 0 NA intron (ENSMUSG00000026389.16, intron 4 of 4) protein_coding-intron (ENSMUSG00000026389.16, intron 4 of 4) 54429 ENSMUSG00000026388.15 ENSMUSG00000026388 ENSMUST00000128578 3110009E18Rik protein_coding Interval_139066 chr6 94729649 94730398 + 0 NA Intergenic Intergenic -29865 ENSMUSG00000030029.14 ENSMUSG00000030029 ENSMUST00000124165 Lrig1 protein_coding Interval_58777 chr15 38015344 38015753 + 0 NA promoter-TSS (ENSMUSG00000037487.7) protein_coding-promoter-TSS (ENSMUSG00000037487.7) -42737 ENSMUSG00000065852.1 ENSMUSG00000065852 ENSMUST00000083918 Gm22353 snoRNA Interval_11147 chr1 179650068 179652189 + 0 NA Intergenic Intergenic -32717 ENSMUSG00000038936.13 ENSMUSG00000038936 ENSMUST00000192611 Sccpdh protein_coding Interval_30920 chr11 97232301 97232684 + 0 NA promoter-TSS (ENSMUSG00000001441.13) protein_coding-promoter-TSS (ENSMUSG00000001441.13) -47636 ENSMUSG00000086680.2 ENSMUSG00000086680 ENSMUST00000133160 Gm11592 antisense Interval_134236 chr6 23406167 23406443 + 0 NA intron (ENSMUSG00000017978.18, intron 14 of 29) protein_coding-intron (ENSMUSG00000017978.18, intron 13 of 29) -113441 ENSMUSG00000098877.1 ENSMUSG00000098877 ENSMUST00000185172 Gm27959 rRNA Interval_17222 chr10 75100383 75100723 + 0 NA intron (ENSMUSG00000009681.10, intron 1 of 22) protein_coding-intron (ENSMUSG00000009681.10, intron 1 of 22) 63464 ENSMUSG00000020175.15 ENSMUSG00000020175 ENSMUST00000151432 Rab36 protein_coding Interval_124928 chr5 60963922 60964619 + 0 NA Intergenic Intergenic -18621 ENSMUSG00000105903.1 ENSMUSG00000105903 ENSMUST00000199566 1700014F14Rik lincRNA Interval_62084 chr15 86337869 86338301 + 0 NA intron (ENSMUSG00000051864.10, intron 8 of 12) protein_coding-intron (ENSMUSG00000051864.10, intron 8 of 12) 102580 ENSMUSG00000051864.10 ENSMUSG00000051864 ENSMUST00000229242 Tbc1d22a protein_coding Interval_95129 chr2 104122491 104123547 + 0 NA exon (ENSMUSG00000032671.5, exon 1 of 2) protein_coding-exon (ENSMUSG00000032671.5, exon 1 of 2) 250 ENSMUSG00000032671.5 ENSMUSG00000032671 ENSMUST00000040374 A930018P22Rik protein_coding Interval_19880 chr10 110854397 110857275 + 0 NA intron (ENSMUSG00000101801.6, intron 2 of 2) antisense-intron (ENSMUSG00000101801.6, intron 2 of 2) 36583 ENSMUSG00000088447.1 ENSMUSG00000088447 ENSMUST00000157822 Gm22186 snoRNA Interval_158560 chr8 84474634 84475746 + 0 NA intron (ENSMUSG00000034656.18, intron 5 of 48) protein_coding-intron (ENSMUSG00000034656.18, intron 3 of 46) -94609 ENSMUSG00000064392.1 ENSMUSG00000064392 ENSMUST00000082458 Gm23626 snoRNA Interval_2012 chr1 35885933 35886221 + 0 NA Intergenic Intergenic 6232 ENSMUSG00000102531.1 ENSMUSG00000102531 ENSMUST00000194261 1110002O04Rik lincRNA Interval_91098 chr2 35012252 35012581 + 0 NA intron (ENSMUSG00000085599.1, intron 2 of 2) protein_coding-intron (ENSMUSG00000026874.10, intron 25 of 40) 7229 ENSMUSG00000026874.10 ENSMUSG00000026874 ENSMUST00000151628 Hc protein_coding Interval_38631 chr12 80681481 80681985 + 0 NA exon (ENSMUSG00000048833.9, exon 7 of 7) protein_coding-exon (ENSMUSG00000048833.9, exon 7 of 7) 10733 ENSMUSG00000044062.7 ENSMUSG00000044062 ENSMUST00000153297 Plekhd1os antisense Interval_58694 chr15 37172343 37173568 + 0 NA promoter-TSS (ENSMUSG00000115848.1) processed_pseudogene-promoter-TSS (ENSMUSG00000115848.1) -551 ENSMUSG00000115848.1 ENSMUSG00000115848 ENSMUST00000227699 Gm9509 processed_pseudogene Interval_61146 chr15 79491448 79491919 + 0 NA intron (ENSMUSG00000044216.7, intron 1 of 1) protein_coding-intron (ENSMUSG00000044216.7, intron 1 of 1) -9009 ENSMUSG00000116081.1 ENSMUSG00000116081 ENSMUST00000229365 Gm49593 TEC Interval_66464 chr16 34030681 34030915 + 0 NA intron (ENSMUSG00000061751.16, intron 11 of 15) protein_coding-intron (ENSMUSG00000061751.16, intron 45 of 59) -23341 ENSMUSG00000116835.1 ENSMUSG00000116835 ENSMUST00000231993 Gm49594 processed_pseudogene Interval_20563 chr10 119054293 119054845 + 0 NA Intergenic Intergenic -4070 ENSMUSG00000112778.1 ENSMUSG00000112778 ENSMUST00000220074 Gm33677 lincRNA Interval_125093 chr5 64389815 64390028 + 0 NA Intergenic Intergenic 6467 ENSMUSG00000105443.1 ENSMUSG00000105443 ENSMUST00000200306 Gm43837 lincRNA Interval_16261 chr10 61781902 61784304 + 0 NA intron (ENSMUSG00000020086.6, intron 1 of 8) protein_coding-intron (ENSMUSG00000020086.6, intron 1 of 8) 1044 ENSMUSG00000020086.6 ENSMUSG00000020086 ENSMUST00000020283 Macroh2a2 protein_coding Interval_159713 chr8 98730616 98732549 + 0 NA Intergenic Intergenic -56380 ENSMUSG00000080480.1 ENSMUSG00000080480 ENSMUST00000116830 Gm23494 snRNA Interval_65284 chr16 21217165 21217447 + 0 NA exon (ENSMUSG00000005958.15, exon 4 of 16) protein_coding-exon (ENSMUSG00000005958.15, exon 4 of 16) 6782 ENSMUSG00000005958.15 ENSMUSG00000005958 ENSMUST00000160053 Ephb3 protein_coding Interval_32947 chr11 113299115 113300000 + 0 NA intron (ENSMUSG00000041654.15, intron 7 of 9) protein_coding-intron (ENSMUSG00000041654.15, intron 8 of 10) -89888 ENSMUSG00000085421.1 ENSMUSG00000085421 ENSMUST00000130373 4732490B19Rik lincRNA Interval_97167 chr2 131949977 131951011 + 0 NA promoter-TSS (ENSMUSG00000027338.16) protein_coding-promoter-TSS (ENSMUSG00000027338.16) -368 ENSMUSG00000027338.16 ENSMUSG00000027338 ENSMUST00000110169 Prnd protein_coding Interval_7074 chr1 125424575 125425424 + 0 NA intron (ENSMUSG00000026341.16, intron 1 of 10) protein_coding-intron (ENSMUSG00000026341.16, intron 2 of 12) 10482 ENSMUSG00000026341.16 ENSMUSG00000026341 ENSMUST00000188827 Actr3 protein_coding Interval_133615 chr6 7683460 7683876 + 0 NA intron (ENSMUSG00000029752.12, intron 3 of 3) protein_coding-intron (ENSMUSG00000029752.12, intron 3 of 11) 9204 ENSMUSG00000029752.12 ENSMUSG00000029752 ENSMUST00000148349 Asns protein_coding Interval_170062 chr9 104144387 104145446 + 0 NA Intergenic Intergenic 22166 ENSMUSG00000090150.10 ENSMUSG00000090150 ENSMUST00000128714 Acad11 protein_coding Interval_165642 chr9 50625924 50628211 + 0 NA Intergenic Intergenic 9546 ENSMUSG00000000167.14 ENSMUSG00000000167 ENSMUST00000125606 Pih1d2 protein_coding Interval_34549 chr12 5030631 5030807 + 0 NA intron (ENSMUSG00000052812.5, intron 27 of 30) protein_coding-intron (ENSMUSG00000052812.5, intron 27 of 30) -31351 ENSMUSG00000087780.1 ENSMUSG00000087780 ENSMUST00000157155 Gm23167 snRNA Interval_3827 chr1 63303232 63303506 + 0 NA exon (ENSMUSG00000027520.16, exon 3 of 3) protein_coding-exon (ENSMUSG00000027520.16, exon 3 of 3) -2986 ENSMUSG00000094214.1 ENSMUSG00000094214 ENSMUST00000083151 Gm23448 snRNA Interval_138684 chr6 91153584 91154048 + 0 NA Intergenic Intergenic 5440 ENSMUSG00000085624.1 ENSMUSG00000085624 ENSMUST00000150544 Gm14573 antisense Interval_21211 chr10 127237979 127239424 + 0 NA intron (ENSMUSG00000074657.5, intron 15 of 27) protein_coding-intron (ENSMUSG00000074657.5, intron 15 of 28) 24394 ENSMUSG00000074657.5 ENSMUSG00000074657 ENSMUST00000218298 Kif5a protein_coding Interval_8469 chr1 139675891 139677419 + 0 NA Intergenic Intergenic 5051 ENSMUSG00000096117.1 ENSMUSG00000096117 ENSMUST00000158349 Gm26271 snRNA Interval_143523 chr7 11821053 11822605 + 0 NA Intergenic Intergenic -12151 ENSMUSG00000047655.2 ENSMUSG00000047655 ENSMUST00000050416 Vmn1r74 protein_coding Interval_93677 chr2 75776882 75777854 + 0 NA intron (ENSMUSG00000086813.1, intron 1 of 3) processed_transcript-intron (ENSMUSG00000086813.1, intron 1 of 3) 180 ENSMUSG00000086813.1 ENSMUSG00000086813 ENSMUST00000135682 Gm13657 processed_transcript Interval_103629 chr3 51301896 51302300 + 0 NA TTS (ENSMUSG00000104200.1) TEC-TTS (ENSMUSG00000104200.1) 805 ENSMUSG00000104200.1 ENSMUSG00000104200 ENSMUST00000195224 Gm37399 TEC Interval_46268 chr13 63239385 63241087 + 0 NA TTS (ENSMUSG00000021458.17) protein_coding-TTS (ENSMUSG00000021458.17) -3985 ENSMUSG00000113326.1 ENSMUSG00000113326 ENSMUST00000220806 Gm47586 TEC Interval_6106 chr1 97038317 97038740 + 0 NA Intergenic Intergenic -12963 ENSMUSG00000100454.1 ENSMUSG00000100454 ENSMUST00000188810 Gm28901 lincRNA Interval_14294 chr10 30546668 30547773 + 0 NA intron (ENSMUSG00000019792.8, intron 10 of 10) protein_coding-intron (ENSMUSG00000019792.8, intron 12 of 12) -15190 ENSMUSG00000111211.1 ENSMUSG00000111211 ENSMUST00000214092 Gm48233 TEC Interval_46029 chr13 60417736 60418008 + 0 NA Intergenic Intergenic 16859 ENSMUSG00000114274.1 ENSMUSG00000114274 ENSMUST00000225281 Gm35333 lincRNA Interval_11783 chr1 185401124 185401311 + 0 NA exon (ENSMUSG00000026615.14, exon 1 of 1) protein_coding-exon (ENSMUSG00000026615.14, exon 1 of 1) -30796 ENSMUSG00000118510.1 ENSMUSG00000118510 ENSMUST00000238834 AC131980.1 processed_pseudogene Interval_69092 chr16 90581048 90582027 + 0 NA Intergenic Intergenic -15236 ENSMUSG00000116830.1 ENSMUSG00000116830 ENSMUST00000231619 Gm49714 lincRNA Interval_116405 chr4 111553244 111553768 + 0 NA intron (ENSMUSG00000061298.14, intron 4 of 6) protein_coding-intron (ENSMUSG00000061298.14, intron 8 of 12) -13189 ENSMUSG00000061298.14 ENSMUSG00000061298 ENSMUST00000142460 Agbl4 protein_coding Interval_105408 chr3 86047914 86049350 + 0 NA intron (ENSMUSG00000028082.14, intron 1 of 20) protein_coding-intron (ENSMUSG00000028082.14, intron 1 of 19) -35858 ENSMUSG00000028082.14 ENSMUSG00000028082 ENSMUST00000183202 Sh3d19 protein_coding Interval_108487 chr3 127580277 127582442 + 0 NA intron (ENSMUSG00000051278.12, intron 8 of 24) protein_coding-intron (ENSMUSG00000051278.12, intron 8 of 25) -23798 ENSMUSG00000105104.1 ENSMUSG00000105104 ENSMUST00000196949 Gm43729 antisense Interval_136934 chr6 64719403 64719939 + 0 NA Intergenic Intergenic -9454 ENSMUSG00000073043.5 ENSMUSG00000073043 ENSMUST00000101351 Atoh1 protein_coding Interval_76674 chr17 83377490 83378727 + 0 NA intron (ENSMUSG00000032624.16, intron 1 of 22) protein_coding-intron (ENSMUSG00000032624.16, intron 1 of 20) -78193 ENSMUSG00000032624.16 ENSMUSG00000032624 ENSMUST00000235121 Eml4 protein_coding Interval_169307 chr9 96285571 96285800 + 0 NA intron (ENSMUSG00000032411.15, intron 2 of 6) protein_coding-intron (ENSMUSG00000032411.15, intron 2 of 6) -2672 ENSMUSG00000032411.15 ENSMUSG00000032411 ENSMUST00000191133 Tfdp2 protein_coding Interval_84370 chr19 10425968 10426609 + 0 NA intron (ENSMUSG00000024743.16, intron 4 of 9) protein_coding-intron (ENSMUSG00000024743.16, intron 3 of 8) -13609 ENSMUSG00000118310.1 ENSMUSG00000118310 ENSMUST00000238123 Gm50268 TEC Interval_82101 chr18 67734990 67735911 + 0 NA Intergenic Intergenic 39407 ENSMUSG00000097835.1 ENSMUSG00000097835 ENSMUST00000180450 Gm26910 bidirectional_promoter_lncRNA Interval_154211 chr8 13465508 13466200 + 0 NA exon (ENSMUSG00000031451.6, exon 15 of 15) protein_coding-exon (ENSMUSG00000031451.6, exon 15 of 15) 28636 ENSMUSG00000031451.6 ENSMUSG00000031451 ENSMUST00000033828 Gas6 protein_coding Interval_23381 chr11 22064490 22064841 + 0 NA intron (ENSMUSG00000042302.14, intron 16 of 24) protein_coding-intron (ENSMUSG00000042302.14, intron 15 of 23) -62955 ENSMUSG00000005917.15 ENSMUSG00000005917 ENSMUST00000147486 Otx1 protein_coding Interval_6476 chr1 111278216 111278941 + 0 NA Intergenic Intergenic -107340 ENSMUSG00000101846.1 ENSMUSG00000101846 ENSMUST00000185792 Gm19927 processed_pseudogene Interval_71719 chr17 25671208 25671521 + 0 NA Intergenic Intergenic 22856 ENSMUSG00000096451.1 ENSMUSG00000096451 ENSMUST00000180010 Gm22645 snRNA Interval_51439 chr14 27560421 27560719 + 0 NA Intergenic Intergenic -8412 ENSMUSG00000114482.1 ENSMUSG00000114482 ENSMUST00000225617 Gm7604 processed_pseudogene Interval_157773 chr8 72966674 72968595 + 0 NA intron (ENSMUSG00000004383.18, intron 7 of 15) protein_coding-intron (ENSMUSG00000004383.18, intron 6 of 14) -48878 ENSMUSG00000093140.1 ENSMUSG00000093140 ENSMUST00000175399 Mir28b miRNA Interval_2692 chr1 43475277 43475478 + 0 NA intron (ENSMUSG00000066877.11, intron 1 of 4) protein_coding-intron (ENSMUSG00000066877.11, intron 1 of 4) -13070 ENSMUSG00000103422.1 ENSMUSG00000103422 ENSMUST00000194710 Gm37536 TEC Interval_331 chr1 4142152 4142461 + 0 NA intron (ENSMUSG00000025900.13, intron 22 of 29) protein_coding-intron (ENSMUSG00000025900.13, intron 22 of 29) 118213 ENSMUSG00000102948.1 ENSMUSG00000102948 ENSMUST00000195384 Gm6101 processed_pseudogene Interval_22658 chr11 12601342 12602300 + 0 NA Intergenic Intergenic -75112 ENSMUSG00000089034.1 ENSMUSG00000089034 ENSMUST00000158409 Gm22156 snoRNA Interval_124137 chr5 38607608 38608702 + 0 NA Intergenic Intergenic 33124 ENSMUSG00000086422.1 ENSMUSG00000086422 ENSMUST00000147322 4930421P07Rik processed_pseudogene Interval_118991 chr4 134891426 134891626 + 0 NA intron (ENSMUSG00000028825.7, intron 7 of 9) protein_coding-intron (ENSMUSG00000028825.7, intron 7 of 9) 11716 ENSMUSG00000028825.7 ENSMUSG00000028825 ENSMUST00000136163 Rhd protein_coding Interval_80912 chr18 50112318 50113302 + 0 NA Intergenic Intergenic -15684 ENSMUSG00000024507.6 ENSMUSG00000024507 ENSMUST00000127325 Hsd17b4 protein_coding Interval_18227 chr10 83929095 83930108 + 0 NA Intergenic Intergenic 27749 ENSMUSG00000112133.1 ENSMUSG00000112133 ENSMUST00000217741 Gm47247 processed_pseudogene Interval_67916 chr16 59498754 59499136 + 0 NA intron (ENSMUSG00000022723.16, intron 4 of 6) protein_coding-intron (ENSMUSG00000022723.16, intron 16 of 18) 26877 ENSMUSG00000022724.15 ENSMUSG00000022724 ENSMUST00000131272 Riox2 protein_coding Interval_9810 chr1 162570187 162571320 + 0 NA promoter-TSS (ENSMUSG00000026696.15) protein_coding-promoter-TSS (ENSMUSG00000026696.15) -16 ENSMUSG00000026696.15 ENSMUSG00000026696 ENSMUST00000138499 Vamp4 protein_coding Interval_172457 chrX 20690324 20690554 + 0 NA intron (ENSMUSG00000031065.14, intron 1 of 15) protein_coding-intron (ENSMUSG00000031065.14, intron 1 of 15) -5966 ENSMUSG00000031065.14 ENSMUSG00000031065 ENSMUST00000129914 Cdk16 protein_coding Interval_123827 chr5 35782709 35784401 + 0 NA intron (ENSMUSG00000029095.17, intron 1 of 21) protein_coding-intron (ENSMUSG00000029095.17, intron 1 of 19) -43568 ENSMUSG00000036553.16 ENSMUSG00000036553 ENSMUST00000154118 Sh3tc1 protein_coding Interval_49158 chr13 108812972 108813788 + 0 NA intron (ENSMUSG00000021699.17, intron 3 of 3) protein_coding-intron (ENSMUSG00000021699.17, intron 1 of 16) -46786 ENSMUSG00000021699.17 ENSMUSG00000021699 ENSMUST00000155459 Pde4d protein_coding Interval_90123 chr2 28321153 28322017 + 0 NA intron (ENSMUSG00000087196.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000087196.1, intron 1 of 2) 2465 ENSMUSG00000087196.1 ENSMUSG00000087196 ENSMUST00000144634 Gm13373 lincRNA Interval_20133 chr10 115178149 115178516 + 0 NA intron (ENSMUSG00000006764.8, intron 4 of 10) protein_coding-intron (ENSMUSG00000006764.8, intron 4 of 10) -2774 ENSMUSG00000006764.8 ENSMUSG00000006764 ENSMUST00000155794 Tph2 protein_coding Interval_154414 chr8 15920029 15920404 + 0 NA intron (ENSMUSG00000060924.15, intron 11 of 20) protein_coding-intron (ENSMUSG00000060924.15, intron 59 of 69) 42552 ENSMUSG00000109757.1 ENSMUSG00000109757 ENSMUST00000211639 Gm7128 processed_pseudogene Interval_16094 chr10 60712192 60712425 + 0 NA exon (ENSMUSG00000020100.15, exon 6 of 6) protein_coding-exon (ENSMUSG00000020100.15, exon 6 of 6) 40475 ENSMUSG00000020100.15 ENSMUSG00000020100 ENSMUST00000144989 Slc29a3 protein_coding Interval_76726 chr17 83708905 83709189 + 0 NA intron (ENSMUSG00000055817.18, intron 2 of 15) protein_coding-intron (ENSMUSG00000055817.18, intron 2 of 16) -20117 ENSMUSG00000055817.18 ENSMUSG00000055817 ENSMUST00000175920 Mta3 protein_coding Interval_29242 chr11 82047911 82048301 + 0 NA TTS (ENSMUSG00000035373.2) protein_coding-TTS (ENSMUSG00000035373.2) 2394 ENSMUSG00000035373.2 ENSMUSG00000035373 ENSMUST00000021011 Ccl7 protein_coding Interval_132322 chr5 144172571 144172813 + 0 NA intron (ENSMUSG00000038970.7, intron 10 of 13) protein_coding-intron (ENSMUSG00000038970.7, intron 10 of 13) -17594 ENSMUSG00000052271.7 ENSMUSG00000052271 ENSMUST00000060747 Bhlha15 protein_coding Interval_11238 chr1 180380794 180381167 + 0 NA intron (ENSMUSG00000038855.10, intron 2 of 7) protein_coding-intron (ENSMUSG00000038855.10, intron 2 of 7) 4536 ENSMUSG00000103772.1 ENSMUSG00000103772 ENSMUST00000194945 Gm36933 TEC Interval_112978 chr4 46600980 46602463 + 0 NA intron (ENSMUSG00000028337.14, intron 1 of 1) protein_coding-intron (ENSMUSG00000028337.14, intron 1 of 11) 170 ENSMUSG00000028337.14 ENSMUSG00000028337 ENSMUST00000127304 Coro2a protein_coding Interval_25269 chr11 46016000 46016335 + 0 NA intron (ENSMUSG00000040489.5, intron 4 of 4) protein_coding-intron (ENSMUSG00000040489.5, intron 4 of 4) -20273 ENSMUSG00000082870.1 ENSMUSG00000082870 ENSMUST00000117047 Gm12165 processed_pseudogene Interval_103776 chr3 52663028 52663721 + 0 NA Intergenic Intergenic 50539 ENSMUSG00000070490.4 ENSMUSG00000070490 ENSMUST00000076317 Gm10293 processed_pseudogene Interval_62660 chr15 96021963 96022699 + 0 NA Intergenic Intergenic -28202 ENSMUSG00000115049.1 ENSMUSG00000115049 ENSMUST00000227616 Gm49172 processed_transcript Interval_108516 chr3 127867770 127869310 + 0 NA TTS (ENSMUSG00000050549.8) protein_coding-TTS (ENSMUSG00000050549.8) -4682 ENSMUSG00000105008.1 ENSMUSG00000105008 ENSMUST00000196219 Gm43652 TEC Interval_37545 chr12 69751576 69752595 + 0 NA intron (ENSMUSG00000020990.5, intron 7 of 9) protein_coding-intron (ENSMUSG00000020990.5, intron 7 of 9) 11859 ENSMUSG00000076065.1 ENSMUSG00000076065 ENSMUST00000102111 Mir681 miRNA Interval_24488 chr11 33649884 33650190 + 0 NA intron (ENSMUSG00000053519.17, intron 1 of 7) protein_coding-intron (ENSMUSG00000053519.17, intron 1 of 7) 42057 ENSMUSG00000073052.4 ENSMUSG00000073052 ENSMUST00000238565 D130052B06Rik lincRNA Interval_123788 chr5 35525160 35526023 + 0 NA promoter-TSS (ENSMUSG00000036596.6) protein_coding-promoter-TSS (ENSMUSG00000036596.6) -20 ENSMUSG00000036596.6 ENSMUSG00000036596 ENSMUST00000132959 Cpz protein_coding Interval_77421 chr17 88586920 88588467 + 0 NA exon (ENSMUSG00000034709.8, exon 22 of 22) protein_coding-exon (ENSMUSG00000034709.8, exon 22 of 22) 20851 ENSMUSG00000117398.1 ENSMUSG00000117398 ENSMUST00000234525 Gm9406 processed_pseudogene Interval_85848 chr19 32335604 32336989 + 0 NA intron (ENSMUSG00000040451.18, intron 2 of 2) protein_coding-intron (ENSMUSG00000040451.18, intron 2 of 9) -52920 ENSMUSG00000097787.2 ENSMUSG00000097787 ENSMUST00000181612 2700046G09Rik bidirectional_promoter_lncRNA Interval_20787 chr10 120949603 120951034 + 0 NA intron (ENSMUSG00000048661.14, intron 2 of 12) protein_coding-intron (ENSMUSG00000048661.14, intron 2 of 13) 22132 ENSMUSG00000082936.1 ENSMUSG00000082936 ENSMUST00000118291 Gm16166 processed_pseudogene Interval_162235 chr8 126336281 126337802 + 0 NA intron (ENSMUSG00000057060.8, intron 3 of 7) protein_coding-intron (ENSMUSG00000057060.8, intron 2 of 6) -85487 ENSMUSG00000051671.7 ENSMUSG00000051671 ENSMUST00000211868 Coa6 protein_coding Interval_37637 chr12 70686513 70687845 + 0 NA intron (ENSMUSG00000114005.1, intron 2 of 2) lincRNA-intron (ENSMUSG00000114005.1, intron 2 of 2) -5329 ENSMUSG00000112950.1 ENSMUSG00000112950 ENSMUST00000222630 Gm32369 lincRNA Interval_72381 chr17 29496853 29497099 + 0 NA TTS (ENSMUSG00000024014.8) protein_coding-TTS (ENSMUSG00000024014.8) 3939 ENSMUSG00000024014.8 ENSMUSG00000024014 ENSMUST00000234270 Pim1 protein_coding Interval_127435 chr5 103910395 103911734 + 0 NA intron (ENSMUSG00000029312.12, intron 1 of 9) protein_coding-intron (ENSMUSG00000029312.12, intron 1 of 9) 12185 ENSMUSG00000095133.1 ENSMUSG00000095133 ENSMUST00000179033 Gm24897 snRNA Interval_112250 chr4 38371077 38371398 + 0 NA Intergenic Intergenic 107319 ENSMUSG00000084148.1 ENSMUSG00000084148 ENSMUST00000119012 Gm12380 processed_pseudogene Interval_96114 chr2 119855323 119858967 + 0 NA Intergenic Intergenic 21258 ENSMUSG00000081056.1 ENSMUSG00000081056 ENSMUST00000120952 Gm13998 processed_pseudogene Interval_110615 chr4 4729576 4730024 + 0 NA TTS (ENSMUSG00000095971.1) snoRNA-TTS (ENSMUSG00000095971.1) 227 ENSMUSG00000095971.1 ENSMUSG00000095971 ENSMUST00000180325 Gm26436 snoRNA Interval_120739 chr4 150362093 150363112 + 0 NA intron (ENSMUSG00000039852.17, intron 1 of 22) protein_coding-intron (ENSMUSG00000039852.17, intron 1 of 22) 41409 ENSMUSG00000089292.1 ENSMUSG00000089292 ENSMUST00000158667 Gm23209 snRNA Interval_144463 chr7 25301115 25301547 + 0 NA promoter-TSS (ENSMUSG00000058741.4) protein_coding-promoter-TSS (ENSMUSG00000058741.4) -80 ENSMUSG00000058741.4 ENSMUSG00000058741 ENSMUST00000080288 Prr19 protein_coding Interval_117281 chr4 121254438 121256236 + 0 NA Intergenic Intergenic -27864 ENSMUSG00000080706.1 ENSMUSG00000080706 ENSMUST00000120885 Gm12890 processed_pseudogene Interval_77310 chr17 87968498 87969088 + 0 NA TTS (ENSMUSG00000117522.1) processed_pseudogene-TTS (ENSMUSG00000117522.1) 427 ENSMUSG00000117522.1 ENSMUSG00000117522 ENSMUST00000234265 Gm50041 processed_pseudogene Interval_121276 chr4 154654331 154656390 + 0 NA promoter-TSS (ENSMUSG00000086810.1) processed_transcript-promoter-TSS (ENSMUSG00000086810.1) -42 ENSMUSG00000086810.1 ENSMUSG00000086810 ENSMUST00000138077 Gm13110 processed_transcript Interval_124339 chr5 44187378 44187615 + 0 NA intron (ENSMUSG00000046985.11, intron 7 of 12) protein_coding-intron (ENSMUSG00000046985.11, intron 8 of 13) 29763 ENSMUSG00000105519.1 ENSMUSG00000105519 ENSMUST00000198875 E430021H15Rik TEC Interval_10966 chr1 177640164 177640877 + 0 NA Intergenic Intergenic 2423 ENSMUSG00000101746.1 ENSMUSG00000101746 ENSMUST00000189507 2310043L19Rik lincRNA Interval_102501 chr3 27237173 27238415 + 0 NA intron (ENSMUSG00000027698.14, intron 3 of 4) protein_coding-intron (ENSMUSG00000027698.14, intron 3 of 4) -40266 ENSMUSG00000102186.1 ENSMUSG00000102186 ENSMUST00000193346 Gm37191 processed_pseudogene Interval_47861 chr13 93924589 93925261 + 0 NA intron (ENSMUSG00000042082.7, intron 6 of 7) protein_coding-intron (ENSMUSG00000042082.7, intron 6 of 7) -1614 ENSMUSG00000093106.1 ENSMUSG00000093106 ENSMUST00000175365 Gm25534 miRNA Interval_84734 chr19 16021326 16022367 + 0 NA Intergenic Intergenic -3605 ENSMUSG00000117711.1 ENSMUSG00000117711 ENSMUST00000235413 Rpl37-ps1 processed_pseudogene Interval_143760 chr7 16147618 16148060 + 0 NA intron (ENSMUSG00000030376.8, intron 4 of 9) protein_coding-intron (ENSMUSG00000030376.8, intron 4 of 8) 18013 ENSMUSG00000030376.8 ENSMUSG00000030376 ENSMUST00000168693 Slc8a2 protein_coding Interval_167760 chr9 72580354 72580769 + 0 NA intron (ENSMUSG00000037674.15, intron 3 of 5) protein_coding-intron (ENSMUSG00000037674.15, intron 2 of 8) -14362 ENSMUSG00000102672.1 ENSMUSG00000102672 ENSMUST00000192251 Gm37105 TEC Interval_125172 chr5 65068884 65070060 + 0 NA intron (ENSMUSG00000037913.12, intron 7 of 7) protein_coding-intron (ENSMUSG00000037913.12, intron 5 of 5) 22660 ENSMUSG00000037913.12 ENSMUSG00000037913 ENSMUST00000203117 Tmem156 protein_coding Interval_109933 chr3 151913895 151915069 + 0 NA Intergenic Intergenic 11927 ENSMUSG00000087997.1 ENSMUSG00000087997 ENSMUST00000157372 Gm25056 snRNA Interval_83290 chr18 83688179 83688404 + 0 NA Intergenic Intergenic -50206 ENSMUSG00000118200.1 ENSMUSG00000118200 ENSMUST00000237789 Gm31621 lincRNA Interval_94823 chr2 95015586 95015948 + 0 NA Intergenic Intergenic -223431 ENSMUSG00000077281.1 ENSMUSG00000077281 ENSMUST00000104093 Gm26396 snoRNA Interval_59959 chr15 62228472 62228822 + 0 NA intron (ENSMUSG00000097039.8, intron 1 of 2) lincRNA-intron (ENSMUSG00000097039.8, intron 5 of 8) -9315 ENSMUSG00000101167.1 ENSMUSG00000101167 ENSMUST00000151919 Macroh2a3 processed_pseudogene Interval_134374 chr6 27262064 27263526 + 0 NA Intergenic Intergenic 181158 ENSMUSG00000107377.1 ENSMUSG00000107377 ENSMUST00000202562 Gm42801 TEC Interval_90916 chr2 33460525 33461949 + 0 NA intron (ENSMUSG00000026788.13, intron 1 of 1) protein_coding-intron (ENSMUSG00000026788.13, intron 2 of 2) 3845 ENSMUSG00000026788.13 ENSMUSG00000026788 ENSMUST00000126442 Zbtb43 protein_coding Interval_42577 chr13 15724690 15724931 + 0 NA exon (ENSMUSG00000021318.15, exon 15 of 15) protein_coding-exon (ENSMUSG00000021318.15, exon 15 of 15) 45310 ENSMUSG00000113309.1 ENSMUSG00000113309 ENSMUST00000222341 Gm48408 TEC Interval_9321 chr1 156217260 156218132 + 0 NA Intergenic Intergenic 9597 ENSMUSG00000102932.1 ENSMUSG00000102932 ENSMUST00000193704 Gm38113 processed_pseudogene Interval_55038 chr14 77387638 77387864 + 0 NA intron (ENSMUSG00000022012.9, intron 3 of 6) protein_coding-intron (ENSMUSG00000022012.9, intron 4 of 18) -43565 ENSMUSG00000115733.1 ENSMUSG00000115733 ENSMUST00000227726 Gm49001 transcribed_processed_pseudogene Interval_161515 chr8 120859637 120861256 + 0 NA intron (ENSMUSG00000092329.1, intron 1 of 15) protein_coding-intron (ENSMUSG00000092329.1, intron 1 of 15) -19760 ENSMUSG00000097087.1 ENSMUSG00000097087 ENSMUST00000181778 Gm26878 lincRNA Interval_144155 chr7 19691393 19692727 + 0 NA TTS (ENSMUSG00000040564.14) protein_coding-TTS (ENSMUSG00000040564.14) 544 ENSMUSG00000040564.14 ENSMUSG00000040564 ENSMUST00000207500 Apoc1 protein_coding Interval_35048 chr12 16855978 16856464 + 0 NA Intergenic Intergenic -5340 ENSMUSG00000114018.1 ENSMUSG00000114018 ENSMUST00000221201 Gm36495 lincRNA Interval_85135 chr19 23098528 23099126 + 0 NA Intergenic Intergenic -22903 ENSMUSG00000097930.2 ENSMUSG00000097930 ENSMUST00000181623 C330002G04Rik lincRNA Interval_91756 chr2 49286990 49287327 + 0 NA intron (ENSMUSG00000036792.12, intron 1 of 3) protein_coding-intron (ENSMUSG00000036792.12, intron 7 of 9) -20997 ENSMUSG00000081272.1 ENSMUSG00000081272 ENSMUST00000119733 Ap2m1-ps processed_pseudogene Interval_101675 chr3 8857613 8857836 + 0 NA intron (ENSMUSG00000040269.5, intron 2 of 2) protein_coding-intron (ENSMUSG00000040269.5, intron 2 of 2) -23475 ENSMUSG00000081594.1 ENSMUSG00000081594 ENSMUST00000120582 Gm15467 processed_pseudogene Interval_46884 chr13 73098829 73100592 + 0 NA Intergenic Intergenic -133685 ENSMUSG00000113952.1 ENSMUSG00000113952 ENSMUST00000223231 Rpl31-ps2 processed_pseudogene Interval_131876 chr5 140536716 140537018 + 0 NA Intergenic Intergenic 9525 ENSMUSG00000105845.1 ENSMUSG00000105845 ENSMUST00000198212 Gm42808 lincRNA Interval_121218 chr4 154133437 154134424 + 0 NA promoter-TSS (ENSMUSG00000088774.1) snoRNA-promoter-TSS (ENSMUSG00000088774.1) -100 ENSMUSG00000088774.1 ENSMUSG00000088774 ENSMUST00000158149 Gm26036 snoRNA Interval_174335 chrX 144687842 144689822 + 0 NA promoter-TSS (ENSMUSG00000041710.4) protein_coding-promoter-TSS (ENSMUSG00000041710.4) -75 ENSMUSG00000071679.4 ENSMUSG00000071679 ENSMUST00000096301 Rtl4 protein_coding Interval_80280 chr18 38773374 38773612 + 0 NA intron (ENSMUSG00000118257.1, intron 2 of 2) lincRNA-intron (ENSMUSG00000118257.1, intron 3 of 3) -1146 ENSMUSG00000081773.1 ENSMUSG00000081773 ENSMUST00000119217 Gm8302 processed_pseudogene Interval_31351 chr11 100203342 100204044 + 0 NA intron (ENSMUSG00000045545.8, intron 7 of 7) protein_coding-intron (ENSMUSG00000045545.8, intron 7 of 7) 2337 ENSMUSG00000045545.8 ENSMUSG00000045545 ENSMUST00000007272 Krt14 protein_coding Interval_32380 chr11 107241450 107242283 + 0 NA intron (ENSMUSG00000040430.18, intron 6 of 7) protein_coding-intron (ENSMUSG00000040430.18, intron 5 of 7) 50772 ENSMUSG00000081360.1 ENSMUSG00000081360 ENSMUST00000119942 Gm11718 processed_pseudogene Interval_118023 chr4 128275287 128275702 + 0 NA intron (ENSMUSG00000028804.20, intron 5 of 70) protein_coding-intron (ENSMUSG00000028804.20, intron 5 of 12) 14450 ENSMUSG00000085717.1 ENSMUSG00000085717 ENSMUST00000131581 Hmgb4os antisense Interval_107001 chr3 102734352 102735854 + 0 NA promoter-TSS (ENSMUSG00000027858.13) protein_coding-promoter-TSS (ENSMUSG00000027858.13) 314 ENSMUSG00000086745.1 ENSMUSG00000086745 ENSMUST00000146624 Tspan2os antisense Interval_2466 chr1 39553644 39554035 + 0 NA intron (ENSMUSG00000048234.13, intron 5 of 5) protein_coding-intron (ENSMUSG00000048234.13, intron 6 of 6) -1837 ENSMUSG00000085894.1 ENSMUSG00000085894 ENSMUST00000146314 Gm15832 processed_transcript Interval_110365 chr3 157464808 157465454 + 0 NA Intergenic Intergenic 55114 ENSMUSG00000104555.1 ENSMUSG00000104555 ENSMUST00000197739 Gm5983 processed_pseudogene Interval_69927 chr17 3242640 3242839 + 0 NA intron (ENSMUSG00000116858.1, intron 1 of 3) lincRNA-intron (ENSMUSG00000116858.1, intron 1 of 3) 11468 ENSMUSG00000116858.1 ENSMUSG00000116858 ENSMUST00000232042 Gm49797 lincRNA Interval_134681 chr6 30336582 30337732 + 0 NA Intergenic Intergenic 10309 ENSMUSG00000087846.1 ENSMUSG00000087846 ENSMUST00000157221 Gm25625 rRNA Interval_39823 chr12 98737078 98738322 + 0 NA promoter-TSS (ENSMUSG00000021009.15) protein_coding-promoter-TSS (ENSMUSG00000021009.15) -22143 ENSMUSG00000021012.16 ENSMUSG00000021012 ENSMUST00000220660 Zc3h14 protein_coding Interval_152806 chr7 137930217 137930981 + 0 NA Intergenic Intergenic -131407 ENSMUSG00000109834.1 ENSMUSG00000109834 ENSMUST00000209641 Gm5650 processed_pseudogene Interval_12520 chr1 194781842 194782883 + 0 NA intron (ENSMUSG00000026640.12, intron 4 of 4) protein_coding-intron (ENSMUSG00000026640.12, intron 13 of 31) 37725 ENSMUSG00000103597.1 ENSMUSG00000103597 ENSMUST00000191940 Gm19777 processed_pseudogene Interval_132974 chr5 149045257 149046150 + 0 NA TTS (ENSMUSG00000066551.12) protein_coding-TTS (ENSMUSG00000066551.12) -29890 ENSMUSG00000085971.4 ENSMUSG00000085971 ENSMUST00000202128 Gm15411 processed_transcript Interval_10 GL456210.1 117940 118356 + 0 NA NA NA NA NA Interval_108849 chr3 132611371 132611702 + 0 NA Intergenic Intergenic -18286 ENSMUSG00000091721.4 ENSMUSG00000091721 ENSMUST00000196701 Gimd1 protein_coding Interval_69444 chr16 93486972 93487168 + 0 NA promoter-TSS (ENSMUSG00000116595.1) lincRNA-promoter-TSS (ENSMUSG00000116595.1) 4 ENSMUSG00000116595.1 ENSMUSG00000116595 ENSMUST00000231757 Gm30695 lincRNA Interval_45542 chr13 55733407 55734510 + 0 NA intron (ENSMUSG00000021496.12, intron 2 of 3) protein_coding-intron (ENSMUSG00000021496.12, intron 2 of 3) 6590 ENSMUSG00000021496.12 ENSMUSG00000021496 ENSMUST00000124968 Pcbd2 protein_coding Interval_69007 chr16 90085180 90085576 + 0 NA intron (ENSMUSG00000002489.16, intron 1 of 11) protein_coding-intron (ENSMUSG00000002489.16, intron 1 of 11) -4605 ENSMUSG00000116536.1 ENSMUSG00000116536 ENSMUST00000232386 Gm2805 processed_pseudogene Interval_131069 chr5 134917647 134918690 + 0 NA Intergenic Intergenic -1620 ENSMUSG00000107322.1 ENSMUSG00000107322 ENSMUST00000200866 4933439J24Rik lincRNA Interval_170569 chr9 108752311 108754069 + 0 NA Intergenic Intergenic -14332 ENSMUSG00000065674.1 ENSMUSG00000065674 ENSMUST00000083740 Gm24259 snRNA Interval_27861 chr11 70465046 70466308 + 0 NA exon (ENSMUSG00000040829.14, exon 11 of 11) protein_coding-exon (ENSMUSG00000040829.14, exon 11 of 11) 5737 ENSMUSG00000040829.14 ENSMUSG00000040829 ENSMUST00000092958 Zmynd15 protein_coding Interval_57628 chr15 12920213 12920475 + 0 NA intron (ENSMUSG00000022191.16, intron 29 of 34) protein_coding-intron (ENSMUSG00000022191.16, intron 29 of 34) -35378 ENSMUSG00000115807.1 ENSMUSG00000115807 ENSMUST00000226269 Gm49100 unprocessed_pseudogene Interval_52442 chr14 46418375 46419960 + 0 NA Intergenic Intergenic -17688 ENSMUSG00000086168.1 ENSMUSG00000086168 ENSMUST00000144439 Gm15221 lincRNA Interval_44499 chr13 45442519 45443348 + 0 NA Intergenic Intergenic 11931 ENSMUSG00000113446.1 ENSMUSG00000113446 ENSMUST00000222635 Gm47455 processed_pseudogene Interval_32082 chr11 105164566 105167076 + 0 NA exon (ENSMUSG00000081965.1, exon 1 of 1) processed_pseudogene-exon (ENSMUSG00000081965.1, exon 1 of 1) 799 ENSMUSG00000081965.1 ENSMUSG00000081965 ENSMUST00000118770 Gm11620 processed_pseudogene Interval_14165 chr10 28240869 28241104 + 0 NA intron (ENSMUSG00000019889.10, intron 2 of 2) protein_coding-intron (ENSMUSG00000019889.10, intron 2 of 31) -26865 ENSMUSG00000076377.1 ENSMUSG00000076377 ENSMUST00000102422 Gm22370 miRNA Interval_125314 chr5 66150733 66152129 + 0 NA promoter-TSS (ENSMUSG00000070780.11) protein_coding-promoter-TSS (ENSMUSG00000070780.11) 219 ENSMUSG00000097092.2 ENSMUSG00000097092 ENSMUST00000180652 Gm26725 antisense Interval_123912 chr5 36474172 36475313 + 0 NA TTS (ENSMUSG00000029198.3) protein_coding-TTS (ENSMUSG00000029198.3) 9370 ENSMUSG00000029196.9 ENSMUSG00000029196 ENSMUST00000119916 Tada2b protein_coding Interval_147968 chr7 75950500 75952202 + 0 NA Intergenic Intergenic -49473 ENSMUSG00000108495.1 ENSMUSG00000108495 ENSMUST00000206543 Gm45139 TEC Interval_156258 chr8 46589762 46590951 + 0 NA intron (ENSMUSG00000038225.15, intron 8 of 14) protein_coding-intron (ENSMUSG00000038225.15, intron 8 of 14) -14393 ENSMUSG00000110270.1 ENSMUSG00000110270 ENSMUST00000211143 Gm45607 antisense Interval_49966 chr13 119020986 119021189 + 0 NA Intergenic Intergenic -162673 ENSMUSG00000114868.1 ENSMUSG00000114868 ENSMUST00000224309 Gm47335 processed_pseudogene Interval_162222 chr8 126099993 126100296 + 0 NA Intergenic Intergenic -38851 ENSMUSG00000057060.8 ENSMUSG00000057060 ENSMUST00000108759 Slc35f3 protein_coding Interval_43692 chr13 35074865 35075294 + 0 NA intron (ENSMUSG00000113738.1, intron 1 of 4) lincRNA-intron (ENSMUSG00000113738.1, intron 1 of 4) -3410 ENSMUSG00000113738.1 ENSMUSG00000113738 ENSMUST00000223077 Gm40910 lincRNA Interval_85713 chr19 29984556 29985342 + 0 NA Intergenic Intergenic -1150 ENSMUSG00000087937.1 ENSMUSG00000087937 ENSMUST00000157312 Gm26046 snRNA Interval_60193 chr15 67251435 67251695 + 0 NA intron (ENSMUSG00000102069.1, intron 3 of 8) lincRNA-intron (ENSMUSG00000102069.1, intron 3 of 8) 24796 ENSMUSG00000102069.1 ENSMUSG00000102069 ENSMUST00000187233 1700012I11Rik lincRNA Interval_25630 chr11 50303091 50303426 + 0 NA intron (ENSMUSG00000020368.15, intron 8 of 14) protein_coding-intron (ENSMUSG00000020368.15, intron 8 of 14) -11454 ENSMUSG00000050567.16 ENSMUSG00000050567 ENSMUST00000059458 Maml1 protein_coding Interval_119505 chr4 137992802 137994440 + 0 NA exon (ENSMUSG00000028760.16, exon 1 of 10) protein_coding-exon (ENSMUSG00000028760.16, exon 1 of 10) 108 ENSMUSG00000028760.16 ENSMUSG00000028760 ENSMUST00000148074 Eif4g3 protein_coding Interval_156588 chr8 53612313 53612555 + 0 NA promoter-TSS (ENSMUSG00000039396.11) protein_coding-promoter-TSS (ENSMUSG00000039396.11) -20829 ENSMUSG00000039396.11 ENSMUSG00000039396 ENSMUST00000135443 Neil3 protein_coding Interval_113199 chr4 49567584 49568073 + 0 NA Intergenic Intergenic 26062 ENSMUSG00000039611.2 ENSMUSG00000039611 ENSMUST00000151542 Tmem246 protein_coding Interval_76386 chr17 79807283 79808662 + 0 NA Intergenic Intergenic -3741 ENSMUSG00000117394.1 ENSMUSG00000117394 ENSMUST00000234236 1700106O07Rik lincRNA Interval_118737 chr4 133458188 133458755 + 0 NA Intergenic Intergenic -21661 ENSMUSG00000046694.6 ENSMUSG00000046694 ENSMUST00000051676 Tent5b protein_coding Interval_8743 chr1 150337897 150338618 + 0 NA intron (ENSMUSG00000099447.1, intron 2 of 3) antisense-intron (ENSMUSG00000099447.1, intron 2 of 3) 8514 ENSMUSG00000099447.1 ENSMUSG00000099447 ENSMUST00000186460 2310030A07Rik antisense Interval_38523 chr12 79851511 79852943 + 0 NA Intergenic Intergenic 73267 ENSMUSG00000112765.1 ENSMUSG00000112765 ENSMUST00000219857 9430078K24Rik lincRNA Interval_135378 chr6 38720149 38720476 + 0 NA intron (ENSMUSG00000061436.15, intron 10 of 14) protein_coding-intron (ENSMUSG00000061436.15, intron 10 of 14) 56433 ENSMUSG00000079598.4 ENSMUSG00000079598 ENSMUST00000238216 Clec2l protein_coding Interval_66629 chr16 35743928 35744414 + 0 NA intron (ENSMUSG00000022848.8, intron 1 of 7) protein_coding-intron (ENSMUSG00000022848.8, intron 2 of 8) -21938 ENSMUSG00000087793.1 ENSMUSG00000087793 ENSMUST00000157168 Gm25967 snoRNA Interval_28469 chr11 76187066 76187343 + 0 NA intron (ENSMUSG00000069808.13, intron 1 of 4) protein_coding-intron (ENSMUSG00000069808.13, intron 1 of 2) -7570 ENSMUSG00000017288.15 ENSMUSG00000017288 ENSMUST00000129256 Vps53 protein_coding Interval_81613 chr18 62100816 62101504 + 0 NA Intergenic Intergenic -41458 ENSMUSG00000118370.1 ENSMUSG00000118370 ENSMUST00000236502 Gm41750 lincRNA Interval_8377 chr1 138512046 138512618 + 0 NA intron (ENSMUSG00000026393.10, intron 7 of 9) protein_coding-intron (ENSMUSG00000026393.10, intron 7 of 7) -3283 ENSMUSG00000099510.2 ENSMUSG00000099510 ENSMUST00000188729 Gm28501 antisense Interval_166021 chr9 55534581 55535202 + 0 NA Intergenic Intergenic -3781 ENSMUSG00000032318.12 ENSMUSG00000032318 ENSMUST00000165302 Isl2 protein_coding Interval_159824 chr8 104098858 104100169 + 0 NA intron (ENSMUSG00000110053.1, intron 1 of 2) antisense-intron (ENSMUSG00000110053.1, intron 1 of 2) 6360 ENSMUSG00000110053.1 ENSMUSG00000110053 ENSMUST00000210896 Gm29682 antisense Interval_125122 chr5 64686827 64687061 + 0 NA Intergenic Intergenic 11577 ENSMUSG00000097668.2 ENSMUSG00000097668 ENSMUST00000180650 Gm26761 lincRNA Interval_56925 chr14 123544810 123545027 + 0 NA intron (ENSMUSG00000000197.8, intron 7 of 10) protein_coding-intron (ENSMUSG00000000197.8, intron 7 of 43) 82226 ENSMUSG00000000197.8 ENSMUSG00000000197 ENSMUST00000228766 Nalcn protein_coding Interval_18899 chr10 92890895 92891185 + 0 NA intron (ENSMUSG00000020014.17, intron 51 of 67) protein_coding-intron (ENSMUSG00000020014.17, intron 50 of 66) 141922 ENSMUSG00000020014.17 ENSMUSG00000020014 ENSMUST00000171781 Cfap54 protein_coding Interval_31453 chr11 100770350 100771379 + 0 NA promoter-TSS (ENSMUSG00000017747.13) protein_coding-promoter-TSS (ENSMUSG00000017747.13) -2151 ENSMUSG00000017747.13 ENSMUSG00000017747 ENSMUST00000139341 Ghdc protein_coding Interval_52722 chr14 48998408 48999507 + 0 NA Intergenic Intergenic 2879 ENSMUSG00000087754.1 ENSMUSG00000087754 ENSMUST00000157129 Gm23470 snRNA Interval_133941 chr6 15996816 15998364 + 0 NA Intergenic Intergenic 92369 ENSMUSG00000108201.1 ENSMUSG00000108201 ENSMUST00000203751 Gm43991 processed_pseudogene Interval_58374 chr15 33996261 33996514 + 0 NA Intergenic Intergenic -16265 ENSMUSG00000115605.1 ENSMUSG00000115605 ENSMUST00000228920 Gm9643 processed_pseudogene Interval_27280 chr11 65211199 65211434 + 0 NA intron (ENSMUSG00000020542.18, intron 5 of 13) protein_coding-intron (ENSMUSG00000020542.18, intron 1 of 9) -29159 ENSMUSG00000020542.18 ENSMUSG00000020542 ENSMUST00000150823 Myocd protein_coding Interval_46317 chr13 63907619 63908096 + 0 NA Intergenic Intergenic 38664 ENSMUSG00000113340.1 ENSMUSG00000113340 ENSMUST00000220900 Gm7695 processed_pseudogene Interval_9838 chr1 162858854 162860101 + 0 NA exon (ENSMUSG00000040181.14, exon 2 of 9) protein_coding-exon (ENSMUSG00000040181.14, exon 2 of 9) 21254 ENSMUSG00000040170.13 ENSMUSG00000040170 ENSMUST00000147617 Fmo2 protein_coding Interval_5099 chr1 84923864 84924581 + 0 NA intron (ENSMUSG00000026220.6, intron 2 of 4) protein_coding-intron (ENSMUSG00000026220.6, intron 2 of 4) 10635 ENSMUSG00000026220.6 ENSMUSG00000026220 ENSMUST00000186980 Slc16a14 protein_coding Interval_167914 chr9 74187292 74187955 + 0 NA intron (ENSMUSG00000044976.17, intron 14 of 19) protein_coding-intron (ENSMUSG00000044976.17, intron 14 of 19) 77267 ENSMUSG00000044976.17 ENSMUSG00000044976 ENSMUST00000149439 Wdr72 protein_coding Interval_43345 chr13 29456405 29456664 + 0 NA intron (ENSMUSG00000006191.17, intron 2 of 2) protein_coding-intron (ENSMUSG00000006191.17, intron 12 of 15) 60920 ENSMUSG00000006191.17 ENSMUSG00000006191 ENSMUST00000129231 Cdkal1 protein_coding Interval_136551 chr6 55473681 55474188 + 0 NA intron (ENSMUSG00000029778.12, intron 3 of 12) protein_coding-intron (ENSMUSG00000029778.12, intron 4 of 16) 13698 ENSMUSG00000029778.12 ENSMUSG00000029778 ENSMUST00000165786 Adcyap1r1 protein_coding Interval_102434 chr3 25858042 25858233 + 0 NA intron (ENSMUSG00000063887.13, intron 5 of 7) protein_coding-intron (ENSMUSG00000063887.13, intron 3 of 5) 126894 ENSMUSG00000104295.1 ENSMUSG00000104295 ENSMUST00000192273 Gm6197 processed_pseudogene Interval_100709 chr2 171868854 171869165 + 0 NA Intergenic Intergenic 93122 ENSMUSG00000086823.7 ENSMUSG00000086823 ENSMUST00000125465 1700028P15Rik processed_transcript Interval_63431 chr15 101046030 101047561 + 0 NA TTS (ENSMUSG00000023033.14) protein_coding-TTS (ENSMUSG00000023033.14) 602 ENSMUSG00000113558.1 ENSMUSG00000113558 ENSMUST00000222611 Tmdd1 protein_coding Interval_96298 chr2 121372351 121372600 + 0 NA TTS (ENSMUSG00000033498.14) protein_coding-TTS (ENSMUSG00000033498.14) 2314 ENSMUSG00000033498.14 ENSMUSG00000033498 ENSMUST00000149219 Strc protein_coding Interval_128863 chr5 115692968 115695411 + 0 NA intron (ENSMUSG00000041609.16, intron 2 of 4) protein_coding-intron (ENSMUSG00000041609.16, intron 2 of 8) -44395 ENSMUSG00000041609.16 ENSMUSG00000041609 ENSMUST00000148840 Bicdl1 protein_coding Interval_126673 chr5 91971595 91972374 + 0 NA TTS (ENSMUSG00000102644.5) transcribed_unitary_pseudogene-TTS (ENSMUSG00000102644.5) -9258 ENSMUSG00000029397.15 ENSMUSG00000029397 ENSMUST00000200905 Rchy1 protein_coding Interval_77272 chr17 87699312 87700378 + 0 NA intron (ENSMUSG00000024151.13, intron 1 of 3) protein_coding-intron (ENSMUSG00000024151.13, intron 8 of 15) 3304 ENSMUSG00000024151.13 ENSMUSG00000024151 ENSMUST00000174703 Msh2 protein_coding Interval_6023 chr1 94052327 94052652 + 0 NA promoter-TSS (ENSMUSG00000026285.7) protein_coding-promoter-TSS (ENSMUSG00000026285.7) 64 ENSMUSG00000026285.7 ENSMUSG00000026285 ENSMUST00000027507 Pdcd1 protein_coding Interval_50740 chr14 18795535 18796444 + 0 NA intron (ENSMUSG00000058317.12, intron 3 of 4) protein_coding-intron (ENSMUSG00000058317.12, intron 2 of 4) -18180 ENSMUSG00000077689.1 ENSMUSG00000077689 ENSMUST00000104501 Gm22499 snoRNA Interval_43165 chr13 24792407 24793688 + 0 NA Intergenic Intergenic -8973 ENSMUSG00000019132.11 ENSMUSG00000019132 ENSMUST00000155575 BC005537 protein_coding Interval_30010 chr11 88670292 88671698 + 0 NA intron (ENSMUSG00000069769.13, intron 5 of 5) protein_coding-intron (ENSMUSG00000069769.13, intron 5 of 13) -47650 ENSMUSG00000087574.1 ENSMUSG00000087574 ENSMUST00000125967 C030037D09Rik lincRNA Interval_131049 chr5 134753496 134753764 + 0 NA intron (ENSMUSG00000107318.1, intron 1 of 4) antisense-intron (ENSMUSG00000107318.1, intron 1 of 4) 6588 ENSMUSG00000107318.1 ENSMUSG00000107318 ENSMUST00000200700 Gm30003 antisense Interval_6239 chr1 103800126 103801564 + 0 NA Intergenic Intergenic 76500 ENSMUSG00000102325.1 ENSMUSG00000102325 ENSMUST00000192862 Gm37789 TEC Interval_93631 chr2 75233484 75233885 + 0 NA intron (ENSMUSG00000100303.3, intron 2 of 5) lincRNA-intron (ENSMUSG00000100303.3, intron 2 of 5) 41407 ENSMUSG00000075276.5 ENSMUSG00000075276 ENSMUST00000122260 Gm13653 processed_pseudogene Interval_137392 chr6 71876111 71877290 + 0 NA intron (ENSMUSG00000052337.15, intron 13 of 13) protein_coding-intron (ENSMUSG00000052337.15, intron 3 of 3) 5567 ENSMUSG00000052337.15 ENSMUSG00000052337 ENSMUST00000205628 Immt protein_coding Interval_164477 chr9 37367429 37369436 + 0 NA intron (ENSMUSG00000046240.8, intron 1 of 4) protein_coding-intron (ENSMUSG00000046240.8, intron 1 of 6) 796 ENSMUSG00000046240.8 ENSMUSG00000046240 ENSMUST00000215951 Hepacam protein_coding Interval_98528 chr2 153014790 153016015 + 0 NA promoter-TSS (ENSMUSG00000027472.14) protein_coding-promoter-TSS (ENSMUSG00000027472.14) -56 ENSMUSG00000027472.14 ENSMUSG00000027472 ENSMUST00000140325 Pdrg1 protein_coding Interval_134341 chr6 25788448 25788661 + 0 NA intron (ENSMUSG00000029676.15, intron 2 of 14) protein_coding-intron (ENSMUSG00000029676.15, intron 5 of 9) 9463 ENSMUSG00000029676.15 ENSMUSG00000029676 ENSMUST00000147970 Pot1a protein_coding Interval_15115 chr10 42649356 42649713 + 0 NA intron (ENSMUSG00000038280.12, intron 2 of 6) protein_coding-intron (ENSMUSG00000038280.12, intron 2 of 5) -29432 ENSMUSG00000038280.12 ENSMUSG00000038280 ENSMUST00000154048 Ostm1 protein_coding Interval_46512 chr13 66743031 66743262 + 0 NA Intergenic Intergenic -1833 ENSMUSG00000114839.1 ENSMUSG00000114839 ENSMUST00000225542 Gm40989 processed_pseudogene Interval_142308 chr6 140565610 140566065 + 0 NA intron (ENSMUSG00000030231.11, intron 10 of 19) protein_coding-intron (ENSMUSG00000030231.11, intron 10 of 19) 2269 ENSMUSG00000030231.11 ENSMUSG00000030231 ENSMUST00000204528 Plekha5 protein_coding Interval_8155 chr1 136130990 136131939 + 0 NA promoter-TSS (ENSMUSG00000041642.18) protein_coding-promoter-TSS (ENSMUSG00000041642.18) -293 ENSMUSG00000086264.9 ENSMUSG00000086264 ENSMUST00000165464 Gm15850 processed_transcript Interval_5661 chr1 90621877 90624146 + 0 NA Intergenic Intergenic 19535 ENSMUSG00000034432.11 ENSMUSG00000034432 ENSMUST00000186882 Cops8 protein_coding Interval_30397 chr11 94129772 94130275 + 0 NA Intergenic Intergenic -3479 ENSMUSG00000086003.7 ENSMUSG00000086003 ENSMUST00000125406 B230206L02Rik processed_transcript Interval_31497 chr11 101026965 101027175 + 0 NA intron (ENSMUSG00000019302.16, intron 6 of 21) protein_coding-intron (ENSMUSG00000019302.16, intron 6 of 21) -3270 ENSMUSG00000098415.1 ENSMUSG00000098415 ENSMUST00000185166 Mir6928 miRNA Interval_83597 chr18 90452000 90452257 + 0 NA Intergenic Intergenic 31332 ENSMUSG00000117805.1 ENSMUSG00000117805 ENSMUST00000237124 Gm18280 lincRNA Interval_47671 chr13 91015259 91015587 + 0 NA intron (ENSMUSG00000021619.6, intron 4 of 6) protein_coding-intron (ENSMUSG00000021619.6, intron 5 of 7) 92206 ENSMUSG00000049517.8 ENSMUSG00000049517 ENSMUST00000224430 Rps23 protein_coding Interval_152034 chr7 128453044 128453352 + 0 NA intron (ENSMUSG00000030846.15, intron 1 of 8) protein_coding-intron (ENSMUSG00000030846.15, intron 2 of 11) 8011 ENSMUSG00000030846.15 ENSMUSG00000030846 ENSMUST00000136782 Tial1 protein_coding Interval_111284 chr4 17134213 17134691 + 0 NA Intergenic Intergenic -88400 ENSMUSG00000082552.1 ENSMUSG00000082552 ENSMUST00000119679 Gm11850 processed_pseudogene Interval_115682 chr4 102049166 102049570 + 0 NA promoter-TSS (ENSMUSG00000082264.1) processed_pseudogene-promoter-TSS (ENSMUSG00000082264.1) -241 ENSMUSG00000082264.1 ENSMUSG00000082264 ENSMUST00000118151 Gm12799 processed_pseudogene Interval_46087 chr13 61463536 61464123 + 0 NA Intergenic Intergenic 19864 ENSMUSG00000114405.1 ENSMUSG00000114405 ENSMUST00000224020 Gm47825 processed_pseudogene Interval_112221 chr4 36391576 36391772 + 0 NA intron (ENSMUSG00000045083.14, intron 3 of 6) protein_coding-intron (ENSMUSG00000045083.14, intron 3 of 7) -52396 ENSMUSG00000084352.1 ENSMUSG00000084352 ENSMUST00000117809 Gm12370 processed_pseudogene Interval_72603 chr17 30970091 30970505 + 0 NA promoter-TSS (ENSMUSG00000118169.1) antisense-promoter-TSS (ENSMUSG00000118169.1) -293 ENSMUSG00000118169.1 ENSMUSG00000118169 ENSMUST00000236274 Gm50249 antisense Interval_72844 chr17 32527984 32529523 + 0 NA exon (ENSMUSG00000091586.2, exon 13 of 13) protein_coding-exon (ENSMUSG00000091586.2, exon 13 of 13) -7833 ENSMUSG00000048440.16 ENSMUSG00000048440 ENSMUST00000168285 Cyp4f16 protein_coding Interval_116671 chr4 116585858 116586362 + 0 NA intron (ENSMUSG00000034042.16, intron 1 of 2) protein_coding-intron (ENSMUSG00000034042.16, intron 7 of 11) 4757 ENSMUSG00000034042.16 ENSMUSG00000034042 ENSMUST00000138837 Gpbp1l1 protein_coding Interval_74160 chr17 46845505 46847789 + 0 NA intron (ENSMUSG00000036568.7, intron 1 of 4) protein_coding-intron (ENSMUSG00000036568.7, intron 1 of 4) -14333 ENSMUSG00000036568.7 ENSMUSG00000036568 ENSMUST00000233455 Bicral protein_coding Interval_57212 chr15 7815173 7815907 + 0 NA intron (ENSMUSG00000022144.4, intron 1 of 2) protein_coding-intron (ENSMUSG00000022144.4, intron 1 of 2) 4694 ENSMUSG00000022144.4 ENSMUSG00000022144 ENSMUST00000022744 Gdnf protein_coding Interval_88191 chr19 60553297 60553817 + 0 NA intron (ENSMUSG00000033417.16, intron 3 of 7) protein_coding-intron (ENSMUSG00000033417.16, intron 3 of 8) -16008 ENSMUSG00000033417.16 ENSMUSG00000033417 ENSMUST00000237682 Cacul1 protein_coding Interval_166439 chr9 59476589 59477385 + 0 NA intron (ENSMUSG00000025234.11, intron 1 of 13) protein_coding-intron (ENSMUSG00000025234.11, intron 1 of 11) -4754 ENSMUSG00000090516.1 ENSMUSG00000090516 ENSMUST00000171632 Rps11-ps1 processed_pseudogene Interval_103883 chr3 54399807 54400229 + 0 NA Intergenic Intergenic 16911 ENSMUSG00000027750.16 ENSMUSG00000027750 ENSMUST00000150868 Postn protein_coding Interval_65084 chr16 18924536 18924830 + 0 NA promoter-TSS (ENSMUSG00000022702.16) protein_coding-promoter-TSS (ENSMUSG00000022702.16) -12718 ENSMUSG00000082130.1 ENSMUSG00000082130 ENSMUST00000120899 Gm15799 processed_pseudogene Interval_50222 chr14 10526487 10527288 + 0 NA intron (ENSMUSG00000060579.13, intron 3 of 4) protein_coding-intron (ENSMUSG00000060579.13, intron 4 of 9) 48213 ENSMUSG00000065328.1 ENSMUSG00000065328 ENSMUST00000083394 Gm22053 snoRNA Interval_50696 chr14 18304460 18304893 + 0 NA intron (ENSMUSG00000021774.13, intron 3 of 5) protein_coding-intron (ENSMUSG00000021774.13, intron 3 of 5) 27068 ENSMUSG00000021774.13 ENSMUSG00000021774 ENSMUST00000161580 Ube2e1 protein_coding Interval_153261 chr7 142996909 142997917 + 0 NA intron (ENSMUSG00000052281.14, intron 1 of 4) antisense-intron (ENSMUSG00000052281.14, intron 1 of 4) -6635 ENSMUSG00000052281.14 ENSMUSG00000052281 ENSMUST00000131740 Tspan32os antisense Interval_30449 chr11 94433621 94434284 + 0 NA exon (ENSMUSG00000020866.17, exon 16 of 35) protein_coding-exon (ENSMUSG00000020866.17, exon 16 of 35) 39689 ENSMUSG00000020866.17 ENSMUSG00000020866 ENSMUST00000152811 Cacna1g protein_coding Interval_64490 chr16 12569644 12570206 + 0 NA Intergenic Intergenic -134443 ENSMUSG00000116197.1 ENSMUSG00000116197 ENSMUST00000230690 Gm38619 lincRNA Interval_19664 chr10 107488755 107489436 + 0 NA Intergenic Intergenic -2961 ENSMUSG00000000435.1 ENSMUSG00000000435 ENSMUST00000000445 Myf5 protein_coding Interval_169281 chr9 96127924 96128428 + 0 NA intron (ENSMUSG00000041440.18, intron 1 of 3) protein_coding-intron (ENSMUSG00000041440.18, intron 1 of 15) -42740 ENSMUSG00000041440.18 ENSMUSG00000041440 ENSMUST00000189249 Gk5 protein_coding Interval_37129 chr12 58756384 58756629 + 0 NA Intergenic Intergenic -7400 ENSMUSG00000112487.1 ENSMUSG00000112487 ENSMUST00000219517 Gm18873 processed_pseudogene Interval_170801 chr9 110857609 110858396 + 0 NA promoter-TSS (ENSMUSG00000048752.7) protein_coding-promoter-TSS (ENSMUSG00000048752.7) -3364 ENSMUSG00000048752.7 ENSMUSG00000048752 ENSMUST00000196027 Prss50 protein_coding Interval_142941 chr6 147116486 147117049 + 0 NA Intergenic Intergenic 11453 ENSMUSG00000040102.10 ENSMUSG00000040102 ENSMUST00000203441 Klhl42 protein_coding Interval_150352 chr7 109843935 109845981 + 0 NA intron (ENSMUSG00000007279.14, intron 5 of 21) protein_coding-intron (ENSMUSG00000007279.14, intron 5 of 21) -36727 ENSMUSG00000007279.14 ENSMUSG00000007279 ENSMUST00000138946 Scube2 protein_coding Interval_146561 chr7 46837803 46839653 + 0 NA Intergenic Intergenic 6264 ENSMUSG00000109663.1 ENSMUSG00000109663 ENSMUST00000210610 Gm45308 processed_pseudogene Interval_112369 chr4 40875694 40877743 + 0 NA Intergenic Intergenic -22713 ENSMUSG00000028413.13 ENSMUSG00000028413 ENSMUST00000108096 B4galt1 protein_coding Interval_107434 chr3 107637554 107637930 + 0 NA Intergenic Intergenic 6420 ENSMUSG00000078604.1 ENSMUSG00000078604 ENSMUST00000106703 Gm10961 protein_coding Interval_35812 chr12 30167123 30167661 + 0 NA Intergenic Intergenic -35493 ENSMUSG00000020673.14 ENSMUSG00000020673 ENSMUST00000155263 Tpo protein_coding Interval_83044 chr18 80729137 80730106 + 0 NA Intergenic Intergenic 24431 ENSMUSG00000118265.1 ENSMUSG00000118265 ENSMUST00000237404 Gm50211 antisense Interval_78098 chr18 8026877 8027329 + 0 NA Intergenic Intergenic -24100 ENSMUSG00000117428.1 ENSMUSG00000117428 ENSMUST00000235002 Gm4833 processed_pseudogene Interval_48566 chr13 100349295 100349906 + 0 NA intron (ENSMUSG00000082956.4, intron 8 of 12) unprocessed_pseudogene-intron (ENSMUSG00000082956.4, intron 8 of 12) 29360 ENSMUSG00000082956.4 ENSMUSG00000082956 ENSMUST00000118082 Naip3 unprocessed_pseudogene Interval_116008 chr4 106953021 106953327 + 0 NA intron (ENSMUSG00000061887.14, intron 1 of 13) protein_coding-intron (ENSMUSG00000061887.14, intron 4 of 17) 69325 ENSMUSG00000085581.1 ENSMUSG00000085581 ENSMUST00000129617 Gm12786 antisense Interval_71542 chr17 24461540 24461832 + 0 NA intron (ENSMUSG00000024137.9, intron 1 of 12) protein_coding-intron (ENSMUSG00000024137.9, intron 1 of 12) -8749 ENSMUSG00000043445.7 ENSMUSG00000043445 ENSMUST00000234216 Pgp protein_coding Interval_132760 chr5 147709349 147709698 + 0 NA intron (ENSMUSG00000029648.13, intron 1 of 12) protein_coding-intron (ENSMUSG00000029648.13, intron 1 of 11) -35993 ENSMUSG00000106845.1 ENSMUSG00000106845 ENSMUST00000202338 Gm43156 lincRNA Interval_161219 chr8 118777236 118778285 + 0 NA intron (ENSMUSG00000031841.19, intron 4 of 7) protein_coding-intron (ENSMUSG00000031841.19, intron 4 of 13) 50860 ENSMUSG00000087707.1 ENSMUSG00000087707 ENSMUST00000157082 Gm22999 snoRNA Interval_39665 chr12 91891280 91891481 + 0 NA promoter-TSS (ENSMUSG00000066389.1) processed_pseudogene-promoter-TSS (ENSMUSG00000066389.1) -107 ENSMUSG00000066389.1 ENSMUSG00000066389 ENSMUST00000085128 Rpl31-ps1 processed_pseudogene Interval_70405 chr17 9837090 9837973 + 0 NA Intergenic Intergenic 11657 ENSMUSG00000117290.1 ENSMUSG00000117290 ENSMUST00000232698 Gm34883 TEC Interval_25902 chr11 52421164 52421842 + 0 NA Intergenic Intergenic 16187 ENSMUSG00000080951.1 ENSMUSG00000080951 ENSMUST00000122004 Gm12208 processed_pseudogene Interval_126689 chr5 92073436 92074984 + 0 NA promoter-TSS (ENSMUSG00000029405.16) protein_coding-promoter-TSS (ENSMUSG00000029405.16) -6678 ENSMUSG00000029405.16 ENSMUSG00000029405 ENSMUST00000202125 G3bp2 protein_coding Interval_142938 chr6 147099171 147100319 + 0 NA intron (ENSMUSG00000040102.10, intron 1 of 2) protein_coding-intron (ENSMUSG00000040102.10, intron 1 of 2) -5569 ENSMUSG00000040102.10 ENSMUSG00000040102 ENSMUST00000203441 Klhl42 protein_coding Interval_133844 chr6 13248334 13249044 + 0 NA Intergenic Intergenic -15056 ENSMUSG00000118525.1 ENSMUSG00000118525 ENSMUST00000238854 AC121573.1 processed_pseudogene Interval_85332 chr19 24871175 24871957 + 0 NA Intergenic Intergenic -4120 ENSMUSG00000058927.6 ENSMUSG00000058927 ENSMUST00000073080 Gm10053 protein_coding Interval_11549 chr1 182637796 182639150 + 0 NA Intergenic Intergenic -41466 ENSMUSG00000104376.1 ENSMUSG00000104376 ENSMUST00000192593 Gm37516 TEC Interval_100142 chr2 167305628 167306066 + 0 NA promoter-TSS (ENSMUSG00000017929.13) protein_coding-promoter-TSS (ENSMUSG00000017929.13) 8008 ENSMUSG00000017929.13 ENSMUSG00000017929 ENSMUST00000133557 B4galt5 protein_coding Interval_55140 chr14 78576122 78576372 + 0 NA intron (ENSMUSG00000034731.11, intron 26 of 27) protein_coding-intron (ENSMUSG00000034731.11, intron 28 of 28) 24229 ENSMUSG00000115087.1 ENSMUSG00000115087 ENSMUST00000228170 Gm48998 TEC Interval_33946 chr11 119593282 119594303 + 0 NA Intergenic Intergenic 45162 ENSMUSG00000087675.1 ENSMUSG00000087675 ENSMUST00000135630 Gm11762 processed_transcript Interval_158638 chr8 84912653 84914251 + 0 NA promoter-TSS (ENSMUSG00000003812.13) protein_coding-promoter-TSS (ENSMUSG00000003812.13) 4805 ENSMUSG00000003812.13 ENSMUSG00000003812 ENSMUST00000148573 Dnase2a protein_coding Interval_122281 chr5 20924744 20925035 + 0 NA intron (ENSMUSG00000039968.9, intron 2 of 2) protein_coding-intron (ENSMUSG00000039968.9, intron 2 of 7) -2490 ENSMUSG00000039968.9 ENSMUSG00000039968 ENSMUST00000197089 Rsbn1l protein_coding Interval_75717 chr17 70838114 70838487 + 0 NA Intergenic Intergenic 3636 ENSMUSG00000093622.1 ENSMUSG00000093622 ENSMUST00000175668 Gm20703 lincRNA Interval_27799 chr11 70059947 70060420 + 0 NA Intergenic Intergenic 6098 ENSMUSG00000020884.15 ENSMUSG00000020884 ENSMUST00000123369 Asgr1 protein_coding Interval_84154 chr19 7590535 7590824 + 0 NA Intergenic Intergenic 16514 ENSMUSG00000024972.16 ENSMUSG00000024972 ENSMUST00000079902 Lgals12 protein_coding Interval_133578 chr6 7002302 7003133 + 0 NA intron (ENSMUSG00000042505.6, intron 1 of 1) protein_coding-intron (ENSMUSG00000042505.6, intron 1 of 1) 46710 ENSMUSG00000042505.6 ENSMUSG00000042505 ENSMUST00000123848 Sdhaf3 protein_coding Interval_133261 chr5 150920067 150920277 + 0 NA Intergenic Intergenic -32532 ENSMUSG00000058488.7 ENSMUSG00000058488 ENSMUST00000202096 Kl protein_coding Interval_77779 chr18 3441929 3442506 + 0 NA Intergenic Intergenic -4597 ENSMUSG00000117370.1 ENSMUSG00000117370 ENSMUST00000235096 Gm6235 processed_pseudogene Interval_162865 chr9 10666425 10666651 + 0 NA intron (ENSMUSG00000039488.15, intron 1 of 20) protein_coding-intron (ENSMUSG00000039488.15, intron 1 of 24) -68102 ENSMUSG00000111209.1 ENSMUSG00000111209 ENSMUST00000213753 Gm7529 processed_pseudogene Interval_96307 chr2 121433629 121434138 + 0 NA TTS (ENSMUSG00000027248.13) protein_coding-TTS (ENSMUSG00000027248.13) 7268 ENSMUSG00000027246.12 ENSMUSG00000027246 ENSMUST00000153866 Ell3 protein_coding Interval_38652 chr12 80827264 80827887 + 0 NA intron (ENSMUSG00000021133.9, intron 1 of 6) protein_coding-intron (ENSMUSG00000021133.9, intron 1 of 5) 37065 ENSMUSG00000021133.9 ENSMUSG00000021133 ENSMUST00000219720 Susd6 protein_coding Interval_106197 chr3 94533895 94534637 + 0 NA exon (ENSMUSG00000106061.1, exon 1 of 1) sense_intronic-exon (ENSMUSG00000106061.1, exon 1 of 1) 1700 ENSMUSG00000106061.1 ENSMUSG00000106061 ENSMUST00000198548 Gm43773 sense_intronic Interval_43872 chr13 37761278 37762603 + 0 NA exon (ENSMUSG00000114800.1, exon 1 of 2) lincRNA-exon (ENSMUSG00000114800.1, exon 1 of 2) 192 ENSMUSG00000114800.1 ENSMUSG00000114800 ENSMUST00000224394 Gm31600 lincRNA Interval_128406 chr5 113155112 113155430 + 0 NA TTS (ENSMUSG00000106659.1) lincRNA-TTS (ENSMUSG00000106659.1) 9943 ENSMUSG00000106659.1 ENSMUSG00000106659 ENSMUST00000196278 Gm42161 lincRNA Interval_156493 chr8 48727888 48729674 + 0 NA intron (ENSMUSG00000031561.16, intron 1 of 2) protein_coding-intron (ENSMUSG00000031561.16, intron 1 of 2) -97612 ENSMUSG00000110509.1 ENSMUSG00000110509 ENSMUST00000212961 Gm45772 processed_pseudogene Interval_65473 chr16 22564144 22565342 + 0 NA intron (ENSMUSG00000022861.17, intron 16 of 19) protein_coding-intron (ENSMUSG00000022861.17, intron 15 of 23) 16190 ENSMUSG00000089663.1 ENSMUSG00000089663 ENSMUST00000159953 Gm15651 antisense Interval_114059 chr4 62805775 62805981 + 0 NA Intergenic Intergenic -6550 ENSMUSG00000077161.1 ENSMUSG00000077161 ENSMUST00000103973 Gm24117 snoRNA Interval_137387 chr6 71848425 71848695 + 0 NA intron (ENSMUSG00000052337.15, intron 3 of 13) protein_coding-intron (ENSMUSG00000052337.15, intron 3 of 14) -16850 ENSMUSG00000108466.1 ENSMUSG00000108466 ENSMUST00000206975 Gm44771 TEC Interval_128620 chr5 114343224 114344083 + 0 NA intron (ENSMUSG00000066952.11, intron 14 of 30) protein_coding-intron (ENSMUSG00000066952.11, intron 14 of 28) 26554 ENSMUSG00000001098.15 ENSMUSG00000001098 ENSMUST00000123538 Kctd10 protein_coding Interval_152337 chr7 131992125 131992578 + 0 NA exon (ENSMUSG00000040125.4, exon 3 of 3) protein_coding-exon (ENSMUSG00000040125.4, exon 3 of 3) 25891 ENSMUSG00000040125.4 ENSMUSG00000040125 ENSMUST00000045840 Gpr26 protein_coding Interval_135225 chr6 37653711 37654196 + 0 NA Intergenic Intergenic 33242 ENSMUSG00000107035.1 ENSMUSG00000107035 ENSMUST00000201305 Ybx1-ps2 processed_pseudogene Interval_34857 chr12 12766135 12767763 + 0 NA Intergenic Intergenic -21036 ENSMUSG00000091430.1 ENSMUSG00000091430 ENSMUST00000171380 Platr19 lincRNA Interval_83825 chr19 4907769 4908749 + 0 NA TTS (ENSMUSG00000063904.4) protein_coding-TTS (ENSMUSG00000063904.4) -1631 ENSMUSG00000006464.9 ENSMUSG00000006464 ENSMUST00000237638 Bbs1 protein_coding Interval_83438 chr18 85509910 85511967 + 0 NA Intergenic Intergenic 205787 ENSMUSG00000117854.1 ENSMUSG00000117854 ENSMUST00000237113 Gm7612 processed_pseudogene Interval_114314 chr4 72403191 72403811 + 0 NA Intergenic Intergenic -139165 ENSMUSG00000083372.1 ENSMUSG00000083372 ENSMUST00000117763 Gm11235 processed_pseudogene Interval_87924 chr19 57141492 57142460 + 0 NA intron (ENSMUSG00000025085.16, intron 4 of 20) protein_coding-intron (ENSMUSG00000025085.16, intron 4 of 25) -131984 ENSMUSG00000117684.1 ENSMUSG00000117684 ENSMUST00000237596 4930449E18Rik antisense Interval_73446 chr17 37324543 37325447 + 0 NA Intergenic Intergenic -7941 ENSMUSG00000091531.2 ENSMUSG00000091531 ENSMUST00000169373 Olfr102 protein_coding Interval_68940 chr16 89517558 89518275 + 0 NA Intergenic Intergenic -9593 ENSMUSG00000056706.3 ENSMUSG00000056706 ENSMUST00000056118 Krtap7-1 protein_coding Interval_169552 chr9 99088831 99089161 + 0 NA intron (ENSMUSG00000032462.14, intron 7 of 23) protein_coding-intron (ENSMUSG00000032462.14, intron 7 of 23) 50929 ENSMUSG00000032462.14 ENSMUSG00000032462 ENSMUST00000124723 Pik3cb protein_coding Interval_37219 chr12 60721149 60721403 + 0 NA Intergenic Intergenic -14222 ENSMUSG00000089603.1 ENSMUSG00000089603 ENSMUST00000158978 Gm23059 snRNA Interval_22308 chr11 8651764 8654269 + 0 NA intron (ENSMUSG00000020422.14, intron 1 of 30) protein_coding-intron (ENSMUSG00000020422.14, intron 1 of 30) 11665 ENSMUSG00000020422.14 ENSMUSG00000020422 ENSMUST00000134823 Tns3 protein_coding Interval_15945 chr10 59545325 59545582 + 0 NA intron (ENSMUSG00000009647.13, intron 3 of 3) protein_coding-intron (ENSMUSG00000009647.13, intron 1 of 7) -70611 ENSMUSG00000071280.2 ENSMUSG00000071280 ENSMUST00000238281 Gm10322 antisense Interval_91051 chr2 34692410 34693495 + 0 NA TTS (ENSMUSG00000026867.18) protein_coding-TTS (ENSMUSG00000026867.18) 8147 ENSMUSG00000026867.18 ENSMUSG00000026867 ENSMUST00000142436 Gapvd1 protein_coding Interval_155379 chr8 33015978 33016359 + 0 NA intron (ENSMUSG00000110214.1, intron 3 of 3) lincRNA-intron (ENSMUSG00000110214.1, intron 3 of 3) 39923 ENSMUSG00000110214.1 ENSMUSG00000110214 ENSMUST00000211548 Gm45587 lincRNA Interval_135723 chr6 45174416 45174842 + 0 NA intron (ENSMUSG00000039419.17, intron 2 of 3) protein_coding-intron (ENSMUSG00000039419.17, intron 1 of 23) -20247 ENSMUSG00000107643.1 ENSMUSG00000107643 ENSMUST00000204928 Gm43885 TEC Interval_170543 chr9 108608478 108608712 + 0 NA promoter-TSS (ENSMUSG00000064145.12) protein_coding-promoter-TSS (ENSMUSG00000064145.12) -11019 ENSMUSG00000006675.10 ENSMUSG00000006675 ENSMUST00000193621 P4htm protein_coding Interval_31188 chr11 98783175 98783618 + 0 NA Intergenic Intergenic -12970 ENSMUSG00000020889.11 ENSMUSG00000020889 ENSMUST00000139220 Nr1d1 protein_coding Interval_30627 chr11 95556141 95557983 + 0 NA Intergenic Intergenic 30673 ENSMUSG00000000120.6 ENSMUSG00000000120 ENSMUST00000000122 Ngfr protein_coding Interval_10952 chr1 177501481 177501892 + 0 NA Intergenic Intergenic 34308 ENSMUSG00000103043.1 ENSMUSG00000103043 ENSMUST00000193447 Gm37306 lincRNA Interval_8269 chr1 136858877 136859194 + 0 NA intron (ENSMUSG00000026398.14, intron 8 of 8) protein_coding-intron (ENSMUSG00000026398.14, intron 8 of 8) -60076 ENSMUSG00000104261.1 ENSMUSG00000104261 ENSMUST00000195232 Gm17781 processed_pseudogene Interval_140913 chr6 122726378 122728722 + 0 NA TTS (ENSMUSG00000003153.10) protein_coding-TTS (ENSMUSG00000003153.10) 20061 ENSMUSG00000012396.12 ENSMUSG00000012396 ENSMUST00000012540 Nanog protein_coding Interval_117300 chr4 122835676 122838200 + 0 NA intron (ENSMUSG00000028657.14, intron 1 of 4) protein_coding-intron (ENSMUSG00000028657.14, intron 1 of 8) 692 ENSMUSG00000028657.14 ENSMUSG00000028657 ENSMUST00000097902 Ppt1 protein_coding Interval_114077 chr4 63158915 63159454 + 0 NA Intergenic Intergenic -4385 ENSMUSG00000028356.4 ENSMUSG00000028356 ENSMUST00000142901 Ambp protein_coding Interval_2251 chr1 37368916 37369489 + 0 NA promoter-TSS (ENSMUSG00000026113.17) protein_coding-promoter-TSS (ENSMUSG00000026113.17) 11805 ENSMUSG00000026113.17 ENSMUSG00000026113 ENSMUST00000123124 Inpp4a protein_coding Interval_60615 chr15 75708909 75709393 + 0 NA intron (ENSMUSG00000022580.13, intron 3 of 13) protein_coding-intron (ENSMUSG00000022580.13, intron 3 of 14) -1588 ENSMUSG00000022580.13 ENSMUSG00000022580 ENSMUST00000229670 Rhpn1 protein_coding Interval_28715 chr11 77887279 77887570 + 0 NA intron (ENSMUSG00000017453.4, intron 2 of 7) protein_coding-intron (ENSMUSG00000017453.4, intron 2 of 7) -2880 ENSMUSG00000017453.4 ENSMUSG00000017453 ENSMUST00000155401 Pipox protein_coding Interval_77238 chr17 87521620 87522862 + 0 NA Intergenic Intergenic 8503 ENSMUSG00000117361.1 ENSMUSG00000117361 ENSMUST00000234692 Gm30984 lincRNA Interval_144051 chr7 19198181 19198405 + 0 NA intron (ENSMUSG00000040811.15, intron 11 of 16) protein_coding-intron (ENSMUSG00000040811.15, intron 11 of 18) -14245 ENSMUSG00000044317.7 ENSMUSG00000044317 ENSMUST00000060225 Gpr4 protein_coding Interval_96210 chr2 120546088 120547137 + 0 NA intron (ENSMUSG00000027288.16, intron 1 of 2) protein_coding-intron (ENSMUSG00000027288.16, intron 2 of 21) -6752 ENSMUSG00000027288.16 ENSMUSG00000027288 ENSMUST00000147353 Zfp106 protein_coding Interval_153564 chr8 3439256 3439996 + 0 NA exon (ENSMUSG00000004568.13, exon 8 of 20) protein_coding-exon (ENSMUSG00000004568.13, exon 8 of 20) -18413 ENSMUSG00000108955.1 ENSMUSG00000108955 ENSMUST00000207266 Gm44775 TEC Interval_43092 chr13 23832897 23833450 + 0 NA Intergenic Intergenic -6417 ENSMUSG00000036083.15 ENSMUSG00000036083 ENSMUST00000225076 Slc17a3 protein_coding Interval_34965 chr12 15814792 15817472 + 0 NA promoter-TSS (ENSMUSG00000097580.1) bidirectional_promoter_lncRNA-promoter-TSS (ENSMUSG00000097580.1) 790 ENSMUSG00000020601.8 ENSMUSG00000020601 ENSMUST00000151100 Trib2 protein_coding Interval_155912 chr8 40992976 40993313 + 0 NA exon (ENSMUSG00000045636.16, exon 10 of 10) protein_coding-exon (ENSMUSG00000045636.16, exon 10 of 10) 23611 ENSMUSG00000045636.16 ENSMUSG00000045636 ENSMUST00000155055 Mtus1 protein_coding Interval_142578 chr6 143488970 143489608 + 0 NA Intergenic Intergenic -23892 ENSMUSG00000077241.1 ENSMUSG00000077241 ENSMUST00000104053 Gm23272 snoRNA Interval_46211 chr13 62553030 62553356 + 0 NA intron (ENSMUSG00000074865.11, intron 1 of 1) protein_coding-intron (ENSMUSG00000055228.8, intron 1 of 2) 5318 ENSMUSG00000055228.8 ENSMUSG00000055228 ENSMUST00000076195 Zfp935 protein_coding Interval_116099 chr4 107673665 107674660 + 0 NA Intergenic Intergenic 9418 ENSMUSG00000028610.16 ENSMUSG00000028610 ENSMUST00000131508 Dmrtb1 protein_coding Interval_133451 chr6 5178522 5178743 + 0 NA intron (ENSMUSG00000002588.13, intron 5 of 8) protein_coding-intron (ENSMUSG00000002588.13, intron 5 of 8) 15152 ENSMUSG00000002588.13 ENSMUSG00000002588 ENSMUST00000176933 Pon1 protein_coding Interval_95635 chr2 113234452 113234908 + 0 NA Intergenic Intergenic -51052 ENSMUSG00000041255.2 ENSMUSG00000041255 ENSMUST00000040856 Tmco5b protein_coding Interval_53641 chr14 60506574 60506824 + 0 NA exon (ENSMUSG00000101797.1, exon 2 of 3) lincRNA-exon (ENSMUSG00000101797.1, exon 2 of 3) 21491 ENSMUSG00000101797.1 ENSMUSG00000101797 ENSMUST00000190392 Gm29266 lincRNA Interval_96212 chr2 120550749 120551560 + 0 NA intron (ENSMUSG00000027288.16, intron 1 of 2) protein_coding-intron (ENSMUSG00000027288.16, intron 2 of 21) -11294 ENSMUSG00000027288.16 ENSMUSG00000027288 ENSMUST00000147353 Zfp106 protein_coding Interval_135842 chr6 47857759 47857988 + 0 NA intron (ENSMUSG00000062519.13, intron 2 of 5) protein_coding-intron (ENSMUSG00000062519.13, intron 2 of 5) 10130 ENSMUSG00000107604.1 ENSMUSG00000107604 ENSMUST00000203678 Gm44041 processed_pseudogene Interval_83245 chr18 82971464 82973029 + 0 NA intron (ENSMUSG00000058881.13, intron 2 of 5) protein_coding-intron (ENSMUSG00000058881.13, intron 2 of 5) -39657 ENSMUSG00000118094.1 ENSMUSG00000118094 ENSMUST00000236941 AC142100.1 processed_transcript Interval_33485 chr11 116832516 116833183 + 0 NA Intergenic Intergenic -4846 ENSMUSG00000020814.13 ENSMUSG00000020814 ENSMUST00000150015 Mxra7 protein_coding Interval_35410 chr12 21428811 21429387 + 0 NA Intergenic Intergenic 11220 ENSMUSG00000097055.2 ENSMUSG00000097055 ENSMUST00000227598 Gm4419 antisense Interval_88145 chr19 59588123 59588391 + 0 NA Intergenic Intergenic 47806 ENSMUSG00000118118.1 ENSMUSG00000118118 ENSMUST00000238140 Gm18161 processed_pseudogene Interval_12072 chr1 189521033 189521467 + 0 NA Intergenic Intergenic 118984 ENSMUSG00000103087.1 ENSMUSG00000103087 ENSMUST00000192679 Gm38122 TEC Interval_95978 chr2 118896259 118897742 + 0 NA Intergenic Intergenic -3377 ENSMUSG00000040007.8 ENSMUSG00000040007 ENSMUST00000036578 Bahd1 protein_coding Interval_14095 chr10 26936113 26936500 + 0 NA Intergenic Intergenic -13434 ENSMUSG00000112751.1 ENSMUSG00000112751 ENSMUST00000220276 Gm48084 antisense Interval_78176 chr18 9817252 9818154 + 0 NA intron (ENSMUSG00000036103.9, intron 2 of 9) protein_coding-intron (ENSMUSG00000036103.9, intron 2 of 10) -1081 ENSMUSG00000117619.1 ENSMUSG00000117619 ENSMUST00000234767 Gm50079 TEC Interval_152077 chr7 128841803 128843172 + 0 NA intron (ENSMUSG00000108600.1, intron 1 of 5) lincRNA-intron (ENSMUSG00000108600.1, intron 1 of 5) 16140 ENSMUSG00000080363.1 ENSMUSG00000080363 ENSMUST00000116713 Gm25778 miRNA Interval_34898 chr12 13091645 13092286 + 0 NA Intergenic Intergenic -10880 ENSMUSG00000112988.1 ENSMUSG00000112988 ENSMUST00000222719 Gm35298 lincRNA Interval_4679 chr1 76637302 76637548 + 0 NA Intergenic Intergenic 127865 ENSMUSG00000098611.1 ENSMUSG00000098611 ENSMUST00000183584 Mir6343 miRNA Interval_41567 chr12 116349909 116350438 + 0 NA intron (ENSMUSG00000021171.8, intron 13 of 22) protein_coding-intron (ENSMUSG00000021171.8, intron 13 of 21) 2421 ENSMUSG00000021171.8 ENSMUSG00000021171 ENSMUST00000223150 Esyt2 protein_coding Interval_9769 chr1 161993325 161993814 + 0 NA exon (ENSMUSG00000040265.16, exon 1 of 1) protein_coding-exon (ENSMUSG00000040265.16, exon 1 of 1) -11400 ENSMUSG00000090260.1 ENSMUSG00000090260 ENSMUST00000160555 2810442N19Rik antisense Interval_95225 chr2 104996683 104996894 + 0 NA intron (ENSMUSG00000045106.12, intron 2 of 2) protein_coding-intron (ENSMUSG00000045106.12, intron 17 of 17) 10035 ENSMUSG00000027170.12 ENSMUSG00000027170 ENSMUST00000111110 Eif3m protein_coding Interval_317 chr1 3681261 3681985 + 0 NA exon (ENSMUSG00000102348.1, exon 1 of 1) TEC-exon (ENSMUSG00000102348.1, exon 1 of 1) 1468 ENSMUSG00000102348.1 ENSMUSG00000102348 ENSMUST00000193244 Gm10568 TEC Interval_108651 chr3 129788194 129789319 + 0 NA exon (ENSMUSG00000093865.7, exon 4 of 4) protein_coding-exon (ENSMUSG00000093865.7, exon 4 of 4) 11765 ENSMUSG00000093865.7 ENSMUSG00000093865 ENSMUST00000188978 Lrit3 protein_coding Interval_6412 chr1 107421166 107421378 + 0 NA intron (ENSMUSG00000067001.11, intron 1 of 3) protein_coding-intron (ENSMUSG00000067001.11, intron 1 of 3) 18905 ENSMUSG00000089278.1 ENSMUSG00000089278 ENSMUST00000158653 Gm24553 snoRNA Interval_138203 chr6 86222110 86222758 + 0 NA intron (ENSMUSG00000029999.14, intron 1 of 5) protein_coding-intron (ENSMUSG00000029999.14, intron 1 of 5) 10840 ENSMUSG00000029999.14 ENSMUSG00000029999 ENSMUST00000194449 Tgfa protein_coding Interval_60335 chr15 72987119 72988020 + 0 NA intron (ENSMUSG00000047921.17, intron 8 of 16) protein_coding-intron (ENSMUSG00000047921.17, intron 8 of 21) 73476 ENSMUSG00000047921.17 ENSMUSG00000047921 ENSMUST00000228960 Trappc9 protein_coding Interval_63567 chr15 102087711 102087891 + 0 NA intron (ENSMUSG00000058655.9, intron 6 of 8) protein_coding-intron (ENSMUSG00000058655.9, intron 6 of 14) 13937 ENSMUSG00000058655.9 ENSMUSG00000058655 ENSMUST00000229254 Eif4b protein_coding Interval_56705 chr14 121491828 121493023 + 0 NA promoter-TSS (ENSMUSG00000025557.10) protein_coding-promoter-TSS (ENSMUSG00000025557.10) 44 ENSMUSG00000025557.10 ENSMUSG00000025557 ENSMUST00000227372 Slc15a1 protein_coding Interval_27039 chr11 62502074 62503344 + 0 NA intron (ENSMUSG00000014245.8, intron 2 of 6) protein_coding-intron (ENSMUSG00000014245.8, intron 2 of 6) 19912 ENSMUSG00000086310.1 ENSMUSG00000086310 ENSMUST00000153718 Gm12278 antisense Interval_167631 chr9 71369736 71370022 + 0 NA Intergenic Intergenic -90694 ENSMUSG00000111181.1 ENSMUSG00000111181 ENSMUST00000214975 Gm48124 processed_pseudogene Interval_100517 chr2 169839895 169840259 + 0 NA intron (ENSMUSG00000047907.11, intron 1 of 2) protein_coding-intron (ENSMUSG00000047907.11, intron 1 of 1) -44816 ENSMUSG00000047907.11 ENSMUSG00000047907 ENSMUST00000140699 Tshz2 protein_coding Interval_56134 chr14 106540034 106540855 + 0 NA Intergenic Intergenic 15799 ENSMUSG00000115695.1 ENSMUSG00000115695 ENSMUST00000227281 Gm48973 processed_pseudogene Interval_3032 chr1 52361912 52362131 + 0 NA Intergenic Intergenic -72926 ENSMUSG00000099648.1 ENSMUSG00000099648 ENSMUST00000185256 Gm5975 processed_pseudogene Interval_157158 chr8 66589647 66589981 + 0 NA promoter-TSS (ENSMUSG00000085082.1) processed_pseudogene-promoter-TSS (ENSMUSG00000085082.1) -806 ENSMUSG00000085082.1 ENSMUSG00000085082 ENSMUST00000128324 Gm16330 processed_pseudogene Interval_96973 chr2 130178458 130179869 + 0 NA intron (ENSMUSG00000027404.15, intron 1 of 1) protein_coding-intron (ENSMUSG00000027404.15, intron 1 of 6) 171 ENSMUSG00000027404.15 ENSMUSG00000027404 ENSMUST00000150835 Snrpb protein_coding Interval_131951 chr5 141024331 141025080 + 0 NA Intergenic Intergenic -5223 ENSMUSG00000104683.1 ENSMUSG00000104683 ENSMUST00000198781 Gm44385 miRNA Interval_85360 chr19 25186140 25188809 + 0 NA intron (ENSMUSG00000052085.7, intron 43 of 47) protein_coding-intron (ENSMUSG00000052085.7, intron 43 of 47) -21258 ENSMUSG00000065634.1 ENSMUSG00000065634 ENSMUST00000083700 Gm24252 snoRNA Interval_7217 chr1 127931133 127931374 + 0 NA intron (ENSMUSG00000036104.12, intron 17 of 24) protein_coding-intron (ENSMUSG00000036104.12, intron 17 of 23) -28263 ENSMUSG00000099760.1 ENSMUSG00000099760 ENSMUST00000186230 Gm28800 antisense Interval_89772 chr2 25338546 25339048 + 0 NA promoter-TSS (ENSMUSG00000088171.1) snRNA-promoter-TSS (ENSMUSG00000088171.1) -854 ENSMUSG00000088171.1 ENSMUSG00000088171 ENSMUST00000157546 Gm25220 snRNA Interval_115684 chr4 102086991 102088726 + 0 NA intron (ENSMUSG00000028525.16, intron 1 of 6) protein_coding-intron (ENSMUSG00000028525.16, intron 1 of 16) -38731 ENSMUSG00000082264.1 ENSMUSG00000082264 ENSMUST00000118151 Gm12799 processed_pseudogene Interval_109807 chr3 147694771 147695249 + 0 NA Intergenic Intergenic -59363 ENSMUSG00000103349.1 ENSMUSG00000103349 ENSMUST00000195819 Gm36888 lincRNA Interval_60122 chr15 65903701 65904689 + 0 NA intron (ENSMUSG00000015001.17, intron 2 of 12) protein_coding-intron (ENSMUSG00000015001.17, intron 2 of 14) -2634 ENSMUSG00000015001.17 ENSMUSG00000015001 ENSMUST00000147776 Oc90 protein_coding Interval_38591 chr12 80317845 80318097 + 0 NA Intergenic Intergenic 58528 ENSMUSG00000112336.1 ENSMUSG00000112336 ENSMUST00000218666 Gm47766 antisense Interval_77268 chr17 87677004 87678103 + 0 NA intron (ENSMUSG00000024151.13, intron 1 of 1) protein_coding-intron (ENSMUSG00000024151.13, intron 1 of 15) -18988 ENSMUSG00000024151.13 ENSMUSG00000024151 ENSMUST00000174703 Msh2 protein_coding Interval_70276 chr17 7945298 7946471 + 0 NA promoter-TSS (ENSMUSG00000090069.2) antisense-promoter-TSS (ENSMUSG00000090069.2) 5 ENSMUSG00000090069.2 ENSMUSG00000090069 ENSMUST00000159947 E430024P14Rik antisense Interval_154173 chr8 13205935 13206926 + 0 NA intron (ENSMUSG00000099338.1, intron 2 of 2) bidirectional_promoter_lncRNA-intron (ENSMUSG00000099338.1, intron 1 of 1) 5710 ENSMUSG00000099338.1 ENSMUSG00000099338 ENSMUST00000187595 2810030D12Rik bidirectional_promoter_lncRNA Interval_44409 chr13 44677991 44679838 + 0 NA Intergenic Intergenic -52456 ENSMUSG00000038518.15 ENSMUSG00000038518 ENSMUST00000173003 Jarid2 protein_coding Interval_145032 chr7 29540653 29542180 + 0 NA Intergenic Intergenic 16873 ENSMUSG00000074224.3 ENSMUSG00000074224 ENSMUST00000098602 4932431P20Rik transcribed_unitary_pseudogene Interval_136083 chr6 50560615 50561017 + 0 NA Intergenic Intergenic 5722 ENSMUSG00000063694.5 ENSMUSG00000063694 ENSMUST00000077766 Cycs protein_coding Interval_1309 chr1 20264863 20265106 + 0 NA intron (ENSMUSG00000043760.16, intron 52 of 66) protein_coding-intron (ENSMUSG00000043760.16, intron 52 of 66) -91468 ENSMUSG00000089914.2 ENSMUSG00000089914 ENSMUST00000161509 4930486I03Rik antisense Interval_5354 chr1 87820801 87821427 + 0 NA exon (ENSMUSG00000056055.13, exon 1 of 3) protein_coding-exon (ENSMUSG00000056055.13, exon 1 of 3) 17434 ENSMUSG00000056055.13 ENSMUSG00000056055 ENSMUST00000145385 Sag protein_coding Interval_121322 chr4 154979930 154980355 + 0 NA TTS (ENSMUSG00000029056.13) protein_coding-TTS (ENSMUSG00000029056.13) 10143 ENSMUSG00000029056.13 ENSMUSG00000029056 ENSMUST00000129386 Pank4 protein_coding Interval_137530 chr6 72914020 72914718 + 0 NA Intergenic Intergenic -14666 ENSMUSG00000055239.10 ENSMUSG00000055239 ENSMUST00000204708 Kcmf1 protein_coding Interval_51742 chr14 31829784 31831378 + 0 NA promoter-TSS (ENSMUSG00000014496.8) protein_coding-promoter-TSS (ENSMUSG00000014496.8) -203 ENSMUSG00000014496.8 ENSMUSG00000014496 ENSMUST00000227937 Ankrd28 protein_coding Interval_90548 chr2 31094580 31095255 + 0 NA intron (ENSMUSG00000075415.13, intron 4 of 6) protein_coding-intron (ENSMUSG00000075415.13, intron 4 of 13) 21395 ENSMUSG00000075415.13 ENSMUSG00000075415 ENSMUST00000136085 Fnbp1 protein_coding Interval_65450 chr16 22401183 22401444 + 0 NA TTS (ENSMUSG00000013089.15) protein_coding-TTS (ENSMUSG00000013089.15) 516 ENSMUSG00000013089.15 ENSMUSG00000013089 ENSMUST00000170393 Etv5 protein_coding Interval_23699 chr11 24731073 24731738 + 0 NA promoter-TSS (ENSMUSG00000073103.2) lincRNA-promoter-TSS (ENSMUSG00000073103.2) -683 ENSMUSG00000073103.2 ENSMUSG00000073103 ENSMUST00000101450 Gm10466 lincRNA Interval_145191 chr7 30551591 30553034 + 0 NA promoter-TSS (ENSMUSG00000036854.14) protein_coding-promoter-TSS (ENSMUSG00000036854.14) -45 ENSMUSG00000036864.16 ENSMUSG00000036864 ENSMUST00000208706 Proser3 protein_coding Interval_28622 chr11 77283765 77283977 + 0 NA intron (ENSMUSG00000037926.15, intron 2 of 3) protein_coding-intron (ENSMUSG00000037926.15, intron 1 of 14) -9573 ENSMUSG00000083899.2 ENSMUSG00000083899 ENSMUST00000121455 Gm12346 transcribed_processed_pseudogene Interval_78791 chr18 20656202 20656413 + 0 NA intron (ENSMUSG00000085595.1, intron 1 of 2) antisense-intron (ENSMUSG00000085595.1, intron 1 of 2) 8953 ENSMUSG00000085595.1 ENSMUSG00000085595 ENSMUST00000130296 Gm16090 antisense Interval_93029 chr2 69665737 69666170 + 0 NA TTS (ENSMUSG00000063145.10) protein_coding-TTS (ENSMUSG00000063145.10) -4167 ENSMUSG00000075307.3 ENSMUSG00000075307 ENSMUST00000100050 Klhl41 protein_coding Interval_67278 chr16 45330243 45330704 + 0 NA Intergenic Intergenic 78534 ENSMUSG00000022661.14 ENSMUSG00000022661 ENSMUST00000172091 Cd200 protein_coding Interval_116178 chr4 108405698 108407194 + 0 NA intron (ENSMUSG00000028597.11, intron 1 of 2) protein_coding-intron (ENSMUSG00000028597.11, intron 1 of 2) 278 ENSMUSG00000028597.11 ENSMUSG00000028597 ENSMUST00000184609 Gpx7 protein_coding Interval_26191 chr11 54984061 54984721 + 0 NA intron (ENSMUSG00000018340.13, intron 23 of 25) protein_coding-intron (ENSMUSG00000018340.13, intron 22 of 24) -28344 ENSMUSG00000020400.17 ENSMUSG00000020400 ENSMUST00000132776 Tnip1 protein_coding Interval_101199 chr2 179412051 179412366 + 0 NA Intergenic Intergenic -2728 ENSMUSG00000039138.1 ENSMUSG00000039138 ENSMUST00000041998 4930591A17Rik lincRNA Interval_78347 chr18 12090780 12090995 + 0 NA intron (ENSMUSG00000049411.15, intron 3 of 3) protein_coding-intron (ENSMUSG00000049411.15, intron 3 of 12) 30593 ENSMUSG00000049411.15 ENSMUSG00000049411 ENSMUST00000234833 Tmem241 protein_coding Interval_37151 chr12 59011463 59013763 + 0 NA promoter-TSS (ENSMUSG00000020986.13) protein_coding-promoter-TSS (ENSMUSG00000020986.13) -12053 ENSMUSG00000060121.15 ENSMUSG00000060121 ENSMUST00000182710 Gemin2 protein_coding Interval_78882 chr18 21115990 21116783 + 0 NA Intergenic Intergenic -39277 ENSMUSG00000062962.5 ENSMUSG00000062962 ENSMUST00000084199 Gm6378 processed_pseudogene Interval_128654 chr5 114537728 114537954 + 0 NA Intergenic Intergenic -13448 ENSMUSG00000086302.1 ENSMUSG00000086302 ENSMUST00000156209 Gm13790 lincRNA Interval_124642 chr5 52753353 52753614 + 0 NA intron (ENSMUSG00000029186.12, intron 5 of 9) protein_coding-intron (ENSMUSG00000029186.12, intron 5 of 9) -1119 ENSMUSG00000029186.12 ENSMUSG00000029186 ENSMUST00000145825 Pi4k2b protein_coding Interval_163697 chr9 24489589 24489854 + 0 NA intron (ENSMUSG00000043067.15, intron 1 of 21) protein_coding-intron (ENSMUSG00000043067.15, intron 3 of 5) 13419 ENSMUSG00000043067.15 ENSMUSG00000043067 ENSMUST00000129048 Dpy19l1 protein_coding Interval_60832 chr15 77029317 77029909 + 0 NA intron (ENSMUSG00000018893.15, intron 1 of 3) protein_coding-intron (ENSMUSG00000018893.15, intron 1 of 3) -7650 ENSMUSG00000018893.15 ENSMUSG00000018893 ENSMUST00000229125 Mb protein_coding Interval_28333 chr11 75251411 75252249 + 0 NA intron (ENSMUSG00000045287.6, intron 1 of 1) protein_coding-intron (ENSMUSG00000045287.6, intron 1 of 1) 58047 ENSMUSG00000045287.6 ENSMUSG00000045287 ENSMUST00000102514 Rtn4rl1 protein_coding Interval_99362 chr2 160232108 160232356 + 0 NA Intergenic Intergenic 101930 ENSMUSG00000074623.4 ENSMUSG00000074623 ENSMUST00000099127 Gm826 protein_coding Interval_153718 chr8 5110753 5111048 + 0 NA Intergenic Intergenic -5549 ENSMUSG00000023073.2 ENSMUSG00000023073 ENSMUST00000023835 Slc10a2 protein_coding Interval_65296 chr16 21310458 21311638 + 0 NA Intergenic Intergenic -14176 ENSMUSG00000096918.2 ENSMUSG00000096918 ENSMUST00000181476 Gm16863 lincRNA Interval_151368 chr7 121840414 121841359 + 0 NA Intergenic Intergenic -1821 ENSMUSG00000108410.1 ENSMUSG00000108410 ENSMUST00000205603 Gm44740 TEC Interval_86267 chr19 38263653 38264637 + 0 NA promoter-TSS (ENSMUSG00000067242.11) protein_coding-promoter-TSS (ENSMUSG00000067242.11) -432 ENSMUSG00000067242.11 ENSMUSG00000067242 ENSMUST00000130039 Lgi1 protein_coding Interval_34641 chr12 8297833 8299127 + 0 NA exon (ENSMUSG00000037660.5, exon 2 of 2) protein_coding-exon (ENSMUSG00000037660.5, exon 2 of 2) 3474 ENSMUSG00000037660.5 ENSMUSG00000037660 ENSMUST00000037313 Gdf7 protein_coding Interval_50738 chr14 18753256 18753732 + 0 NA intron (ENSMUSG00000058317.12, intron 3 of 4) protein_coding-intron (ENSMUSG00000058317.12, intron 2 of 4) -60675 ENSMUSG00000077689.1 ENSMUSG00000077689 ENSMUST00000104501 Gm22499 snoRNA Interval_22598 chr11 12128875 12129459 + 0 NA Intergenic Intergenic -1169 ENSMUSG00000083527.1 ENSMUSG00000083527 ENSMUST00000121727 Gm12001 processed_pseudogene Interval_88942 chr2 13276006 13276699 + 0 NA TTS (ENSMUSG00000026726.10) protein_coding-TTS (ENSMUSG00000026726.10) 4750 ENSMUSG00000086358.2 ENSMUSG00000086358 ENSMUST00000193685 Gm13270 processed_transcript Interval_14942 chr10 41302742 41304296 + 0 NA promoter-TSS (ENSMUSG00000038417.4) protein_coding-promoter-TSS (ENSMUSG00000038417.4) -259 ENSMUSG00000038417.4 ENSMUSG00000038417 ENSMUST00000043814 Fig4 protein_coding Interval_89948 chr2 26646862 26648123 + 0 NA Intergenic Intergenic 3603 ENSMUSG00000086775.7 ENSMUSG00000086775 ENSMUST00000147986 Snhg7os antisense Interval_4899 chr1 81769942 81770111 + 0 NA Intergenic Intergenic -27057 ENSMUSG00000087008.4 ENSMUSG00000087008 ENSMUST00000117185 Gm5530 processed_pseudogene Interval_46519 chr13 66790310 66791879 + 0 NA TTS (ENSMUSG00000114353.1) transcribed_processed_pseudogene-TTS (ENSMUSG00000114353.1) -8203 ENSMUSG00000114314.1 ENSMUSG00000114314 ENSMUST00000224105 Gm48413 processed_pseudogene Interval_108847 chr3 132573035 132573460 + 0 NA Intergenic Intergenic -35582 ENSMUSG00000089510.1 ENSMUSG00000089510 ENSMUST00000158885 Gm25307 snRNA Interval_93704 chr2 75999822 76000032 + 0 NA intron (ENSMUSG00000075270.11, intron 19 of 19) protein_coding-intron (ENSMUSG00000075270.11, intron 19 of 19) -17960 ENSMUSG00000075271.4 ENSMUSG00000075271 ENSMUST00000099994 Ttc30a1 protein_coding Interval_57558 chr15 12334869 12335077 + 0 NA intron (ENSMUSG00000022200.8, intron 1 of 1) protein_coding-intron (ENSMUSG00000022200.8, intron 1 of 3) -13074 ENSMUSG00000097221.1 ENSMUSG00000097221 ENSMUST00000180521 1810049J17Rik protein_coding Interval_173584 chrX 99986787 99987122 + 0 NA intron (ENSMUSG00000059327.9, intron 1 of 1) protein_coding-intron (ENSMUSG00000059327.9, intron 1 of 6) 165933 ENSMUSG00000071719.2 ENSMUSG00000071719 ENSMUST00000096363 Tmem28 protein_coding Interval_83164 chr18 82474710 82476402 + 0 NA intron (ENSMUSG00000041607.17, intron 1 of 5) protein_coding-intron (ENSMUSG00000041607.17, intron 1 of 6) 48465 ENSMUSG00000061684.6 ENSMUSG00000061684 ENSMUST00000130005 Rpl21-ps8 processed_pseudogene Interval_149772 chr7 101373074 101373497 + 0 NA TTS (ENSMUSG00000032812.18) protein_coding-TTS (ENSMUSG00000032812.18) -12323 ENSMUSG00000032812.18 ENSMUSG00000032812 ENSMUST00000124637 Arap1 protein_coding Interval_56450 chr14 118836663 118836962 + 0 NA intron (ENSMUSG00000022132.15, intron 1 of 3) protein_coding-intron (ENSMUSG00000022132.15, intron 1 of 4) -9781 ENSMUSG00000077661.1 ENSMUSG00000077661 ENSMUST00000104473 n-R5s51 rRNA Interval_11370 chr1 181282901 181283257 + 0 NA exon (ENSMUSG00000103260.1, exon 1 of 1) processed_pseudogene-exon (ENSMUSG00000103260.1, exon 1 of 1) 1033 ENSMUSG00000103260.1 ENSMUSG00000103260 ENSMUST00000192106 Gm8146 processed_pseudogene Interval_105466 chr3 86822416 86822685 + 0 NA intron (ENSMUSG00000028078.14, intron 6 of 17) protein_coding-intron (ENSMUSG00000028078.14, intron 5 of 15) -41942 ENSMUSG00000104074.1 ENSMUSG00000104074 ENSMUST00000195159 Gm37025 processed_pseudogene Interval_62225 chr15 88939180 88940305 + 0 NA intron (ENSMUSG00000022388.14, intron 1 of 11) protein_coding-intron (ENSMUSG00000022388.14, intron 1 of 11) 14317 ENSMUSG00000022388.14 ENSMUSG00000022388 ENSMUST00000137740 Ttll8 protein_coding Interval_70614 chr17 12349332 12349600 + 0 NA Intergenic Intergenic -7016 ENSMUSG00000117197.1 ENSMUSG00000117197 ENSMUST00000232948 Gm6618 processed_pseudogene Interval_91528 chr2 41186785 41187383 + 0 NA intron (ENSMUSG00000049252.17, intron 31 of 62) protein_coding-intron (ENSMUSG00000049252.17, intron 34 of 90) 188227 ENSMUSG00000083260.1 ENSMUSG00000083260 ENSMUST00000121274 Gm13460 processed_pseudogene Interval_61830 chr15 84471025 84471396 + 0 NA Intergenic Intergenic -24113 ENSMUSG00000062760.11 ENSMUSG00000062760 ENSMUST00000186527 Shisal1 protein_coding Interval_134591 chr6 29814625 29814851 + 0 NA intron (ENSMUSG00000029772.17, intron 1 of 17) protein_coding-intron (ENSMUSG00000029772.17, intron 1 of 16) -61941 ENSMUSG00000029772.17 ENSMUSG00000029772 ENSMUST00000128837 Ahcyl2 protein_coding Interval_71618 chr17 24886074 24887306 + 0 NA promoter-TSS (ENSMUSG00000024160.16) protein_coding-promoter-TSS (ENSMUSG00000024160.16) 16 ENSMUSG00000024160.16 ENSMUSG00000024160 ENSMUST00000144430 Spsb3 protein_coding Interval_43610 chr13 34086985 34087981 + 0 NA intron (ENSMUSG00000114067.1, intron 2 of 3) transcribed_unprocessed_pseudogene-intron (ENSMUSG00000114067.1, intron 2 of 3) 1544 ENSMUSG00000114067.1 ENSMUSG00000114067 ENSMUST00000221908 Gm47065 transcribed_unprocessed_pseudogene Interval_69918 chr17 3197719 3197965 + 0 NA promoter-TSS (ENSMUSG00000116858.1) lincRNA-promoter-TSS (ENSMUSG00000116858.1) -33429 ENSMUSG00000116858.1 ENSMUSG00000116858 ENSMUST00000232042 Gm49797 lincRNA Interval_44277 chr13 43292665 43293365 + 0 NA intron (ENSMUSG00000051335.6, intron 1 of 1) protein_coding-intron (ENSMUSG00000051335.6, intron 1 of 1) 10390 ENSMUSG00000051335.6 ENSMUSG00000051335 ENSMUST00000222779 Gfod1 protein_coding Interval_150657 chr7 113131683 113133048 + 0 NA intron (ENSMUSG00000110009.1, intron 2 of 5) lincRNA-intron (ENSMUSG00000110009.1, intron 2 of 4) 9650 ENSMUSG00000110009.1 ENSMUSG00000110009 ENSMUST00000210408 4930543E12Rik lincRNA Interval_72173 chr17 28417185 28419770 + 0 NA promoter-TSS (ENSMUSG00000024222.17) protein_coding-promoter-TSS (ENSMUSG00000024222.17) 7953 ENSMUSG00000117313.1 ENSMUSG00000117313 ENSMUST00000233201 Gm49838 sense_intronic Interval_19008 chr10 93757416 93758706 + 0 NA Intergenic Intergenic -20599 ENSMUSG00000090610.3 ENSMUSG00000090610 ENSMUST00000170703 Gm3571 processed_pseudogene Interval_28734 chr11 77981652 77983217 + 0 NA promoter-TSS (ENSMUSG00000037791.15) protein_coding-promoter-TSS (ENSMUSG00000037791.15) -41195 ENSMUSG00000037791.15 ENSMUSG00000037791 ENSMUST00000125079 Phf12 protein_coding Interval_105007 chr3 79674628 79675395 + 0 NA exon (ENSMUSG00000098204.1, exon 1 of 1) sense_intronic-exon (ENSMUSG00000098204.1, exon 1 of 1) 1865 ENSMUSG00000098204.1 ENSMUSG00000098204 ENSMUST00000182345 Gm26984 sense_intronic Interval_113596 chr4 56912619 56912933 + 0 NA promoter-TSS (ENSMUSG00000064595.1) snoRNA-promoter-TSS (ENSMUSG00000064595.1) -866 ENSMUSG00000064595.1 ENSMUSG00000064595 ENSMUST00000082661 Gm22300 snoRNA Interval_66026 chr16 31024690 31026269 + 0 NA intron (ENSMUSG00000047434.14, intron 2 of 2) protein_coding-intron (ENSMUSG00000047434.14, intron 2 of 3) 44347 ENSMUSG00000047434.14 ENSMUSG00000047434 ENSMUST00000142870 Xxylt1 protein_coding Interval_22690 chr11 13035510 13036014 + 0 NA Intergenic Intergenic 38096 ENSMUSG00000084055.1 ENSMUSG00000084055 ENSMUST00000117869 Gm12004 processed_pseudogene Interval_91005 chr2 34131260 34132469 + 0 NA Intergenic Intergenic -20420 ENSMUSG00000103413.1 ENSMUSG00000103413 ENSMUST00000147871 Gm38389 lincRNA Interval_20108 chr10 114854787 114855812 + 0 NA Intergenic Intergenic -19708 ENSMUSG00000111883.1 ENSMUSG00000111883 ENSMUST00000219061 Gm31182 lincRNA Interval_21720 chr11 3931339 3932302 + 0 NA promoter-TSS (ENSMUSG00000020432.12) protein_coding-promoter-TSS (ENSMUSG00000020432.12) 339 ENSMUSG00000020432.12 ENSMUSG00000020432 ENSMUST00000109993 Tcn2 protein_coding Interval_58531 chr15 35770585 35771584 + 0 NA intron (ENSMUSG00000037646.10, intron 36 of 61) protein_coding-intron (ENSMUSG00000037646.10, intron 36 of 61) -16070 ENSMUSG00000115837.1 ENSMUSG00000115837 ENSMUST00000228829 9130002K18Rik TEC Interval_21759 chr11 4177921 4178179 + 0 NA exon (ENSMUSG00000002129.11, exon 1 of 3) protein_coding-exon (ENSMUSG00000002129.11, exon 1 of 3) 502 ENSMUSG00000002129.11 ENSMUSG00000002129 ENSMUST00000133095 Sf3a1 protein_coding Interval_46156 chr13 62077630 62079302 + 0 NA intron (ENSMUSG00000114036.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000114036.1, intron 1 of 1) -19304 ENSMUSG00000113566.1 ENSMUSG00000113566 ENSMUST00000221554 Gm40977 lincRNA Interval_29595 chr11 85243213 85243501 + 0 NA Intergenic Intergenic -8227 ENSMUSG00000018481.9 ENSMUSG00000018481 ENSMUST00000018625 Appbp2 protein_coding Interval_132204 chr5 143328474 143330080 + 0 NA promoter-TSS (ENSMUSG00000001844.10) protein_coding-promoter-TSS (ENSMUSG00000001844.10) -31 ENSMUSG00000089889.2 ENSMUSG00000089889 ENSMUST00000162890 0610040B10Rik antisense Interval_65549 chr16 23256107 23256520 + 0 NA intron (ENSMUSG00000022885.16, intron 1 of 7) protein_coding-intron (ENSMUSG00000022885.16, intron 1 of 7) 30292 ENSMUSG00000022885.16 ENSMUSG00000022885 ENSMUST00000115335 St6gal1 protein_coding Interval_4602 chr1 75381034 75382999 + 0 NA promoter-TSS (ENSMUSG00000026207.16) protein_coding-promoter-TSS (ENSMUSG00000026207.16) -110 ENSMUSG00000026207.16 ENSMUSG00000026207 ENSMUST00000143679 Speg protein_coding Interval_72728 chr17 31789155 31791025 + 0 NA intron (ENSMUSG00000117355.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000117355.1, intron 1 of 1) 564 ENSMUSG00000117355.1 ENSMUSG00000117355 ENSMUST00000234824 Gm49999 lincRNA Interval_44263 chr13 43182803 43184118 + 0 NA Intergenic Intergenic -23908 ENSMUSG00000021368.15 ENSMUSG00000021368 ENSMUST00000221095 Tbc1d7 protein_coding Interval_8307 chr1 137136129 137136403 + 0 NA Intergenic Intergenic 79381 ENSMUSG00000077207.1 ENSMUSG00000077207 ENSMUST00000104019 Gm25609 snRNA Interval_135829 chr6 47633404 47634358 + 0 NA Intergenic Intergenic -1416 ENSMUSG00000108180.1 ENSMUSG00000108180 ENSMUST00000204231 Gm44141 TEC Interval_103690 chr3 51648101 51648781 + 0 NA Intergenic Intergenic -11513 ENSMUSG00000104166.1 ENSMUSG00000104166 ENSMUST00000194675 Gm38247 processed_pseudogene Interval_73602 chr17 40964742 40966136 + 0 NA Intergenic Intergenic 10251 ENSMUSG00000023921.9 ENSMUSG00000023921 ENSMUST00000233222 Mmut protein_coding Interval_30068 chr11 88986547 88986958 + 0 NA promoter-TSS (ENSMUSG00000033983.14) protein_coding-promoter-TSS (ENSMUSG00000033983.14) -827 ENSMUSG00000033983.14 ENSMUSG00000033983 ENSMUST00000140549 Coil protein_coding Interval_164404 chr9 36778408 36778711 + 0 NA TTS (ENSMUSG00000062762.17) protein_coding-TTS (ENSMUSG00000062762.17) 10672 ENSMUSG00000096993.3 ENSMUSG00000096993 ENSMUST00000180474 Gm26787 antisense Interval_114320 chr4 72646718 72647357 + 0 NA Intergenic Intergenic 104371 ENSMUSG00000083372.1 ENSMUSG00000083372 ENSMUST00000117763 Gm11235 processed_pseudogene Interval_77188 chr17 87212219 87212702 + 0 NA Intergenic Intergenic -17518 ENSMUSG00000117384.1 ENSMUSG00000117384 ENSMUST00000234580 C330024C12Rik lincRNA Interval_21496 chr10 128921069 128921388 + 0 NA intron (ENSMUSG00000090247.7, intron 2 of 3) protein_coding-intron (ENSMUSG00000090247.7, intron 2 of 3) -1931 ENSMUSG00000025350.15 ENSMUSG00000025350 ENSMUST00000135161 Rdh5 protein_coding Interval_21610 chr11 3216315 3216931 + 0 NA intron (ENSMUSG00000020454.17, intron 3 of 15) protein_coding-intron (ENSMUSG00000020454.17, intron 4 of 17) 13628 ENSMUSG00000020454.17 ENSMUSG00000020454 ENSMUST00000147534 Eif4enif1 protein_coding Interval_47525 chr13 86344868 86346142 + 0 NA Intergenic Intergenic 109678 ENSMUSG00000098152.1 ENSMUSG00000098152 ENSMUST00000182392 Gm27025 processed_pseudogene Interval_133970 chr6 17064741 17066055 + 0 NA promoter-TSS (ENSMUSG00000084772.1) lincRNA-promoter-TSS (ENSMUSG00000084772.1) 238 ENSMUSG00000029552.19 ENSMUSG00000029552 ENSMUST00000076654 Tes protein_coding Interval_1434 chr1 23307196 23307735 + 0 NA Intergenic Intergenic 13736 ENSMUSG00000100775.1 ENSMUSG00000100775 ENSMUST00000190910 Gm29107 lincRNA Interval_25638 chr11 50345418 50346757 + 0 NA Intergenic Intergenic -1541 ENSMUSG00000082545.1 ENSMUSG00000082545 ENSMUST00000120954 Gm12196 processed_pseudogene Interval_110483 chr3 159385294 159385630 + 0 NA Intergenic Intergenic -105956 ENSMUSG00000104864.1 ENSMUSG00000104864 ENSMUST00000197367 Gm43655 processed_pseudogene Interval_135165 chr6 37119995 37121084 + 0 NA intron (ENSMUSG00000038665.15, intron 3 of 32) protein_coding-intron (ENSMUSG00000038665.15, intron 3 of 32) 163689 ENSMUSG00000107310.1 ENSMUSG00000107310 ENSMUST00000202891 Gm7452 transcribed_processed_pseudogene Interval_136580 chr6 56025295 56025727 + 0 NA intron (ENSMUSG00000002930.6, intron 2 of 4) protein_coding-intron (ENSMUSG00000002930.6, intron 2 of 4) 8014 ENSMUSG00000002930.6 ENSMUSG00000002930 ENSMUST00000052827 Ppp1r17 protein_coding Interval_98087 chr2 147807769 147808653 + 0 NA Intergenic Intergenic 66667 ENSMUSG00000065791.1 ENSMUSG00000065791 ENSMUST00000083857 Gm25516 snRNA Interval_91392 chr2 38511372 38512479 + 0 NA exon (ENSMUSG00000026749.11, exon 1 of 10) protein_coding-exon (ENSMUSG00000026749.11, exon 1 of 10) -2701 ENSMUSG00000026749.11 ENSMUSG00000026749 ENSMUST00000156726 Nek6 protein_coding Interval_98181 chr2 149548920 149549108 + 0 NA Intergenic Intergenic 17271 ENSMUSG00000089270.1 ENSMUSG00000089270 ENSMUST00000158645 Gm24551 snoRNA Interval_126129 chr5 77826764 77827188 + 0 NA Intergenic Intergenic 82484 ENSMUSG00000106960.1 ENSMUSG00000106960 ENSMUST00000202676 Gm42673 processed_pseudogene Interval_100138 chr2 167291593 167291950 + 0 NA Intergenic Intergenic -9994 ENSMUSG00000083661.1 ENSMUSG00000083661 ENSMUST00000118980 Gm11473 processed_pseudogene Interval_16426 chr10 62830183 62830802 + 0 NA intron (ENSMUSG00000047146.17, intron 6 of 12) protein_coding-intron (ENSMUSG00000047146.17, intron 5 of 10) 29502 ENSMUSG00000112309.1 ENSMUSG00000112309 ENSMUST00000220243 Gm48353 TEC Interval_16438 chr10 62865110 62866795 + 0 NA promoter-TSS (ENSMUSG00000047146.17) protein_coding-promoter-TSS (ENSMUSG00000047146.17) -5958 ENSMUSG00000112309.1 ENSMUSG00000112309 ENSMUST00000220243 Gm48353 TEC Interval_37336 chr12 65204634 65205229 + 0 NA intron (ENSMUSG00000113233.1, intron 1 of 3) lincRNA-intron (ENSMUSG00000113233.1, intron 1 of 3) 8570 ENSMUSG00000113233.1 ENSMUSG00000113233 ENSMUST00000222636 Gm31063 lincRNA Interval_92113 chr2 53372620 53373060 + 0 NA Intergenic Intergenic 25647 ENSMUSG00000082472.1 ENSMUSG00000082472 ENSMUST00000118477 Gm13501 processed_pseudogene Interval_115054 chr4 88937833 88939009 + 0 NA promoter-TSS (ENSMUSG00000117123.1) lincRNA-promoter-TSS (ENSMUSG00000117123.1) 100 ENSMUSG00000117123.1 ENSMUSG00000117123 ENSMUST00000233522 Gm49890 lincRNA Interval_108898 chr3 133090974 133092510 + 0 NA promoter-TSS (ENSMUSG00000028016.9) protein_coding-promoter-TSS (ENSMUSG00000028016.9) -8614 ENSMUSG00000028018.15 ENSMUSG00000028018 ENSMUST00000197381 Gstcd protein_coding Interval_173955 chrX 115414542 115415073 + 0 NA Intergenic Intergenic 15992 ENSMUSG00000098405.1 ENSMUSG00000098405 ENSMUST00000185033 Gm27414 scaRNA Interval_4116 chr1 69164500 69165428 + 0 NA Intergenic Intergenic -33665 ENSMUSG00000084332.1 ENSMUSG00000084332 ENSMUST00000122454 Gm8840 processed_pseudogene Interval_69584 chr16 94438206 94438393 + 0 NA intron (ENSMUSG00000040785.19, intron 31 of 32) protein_coding-intron (ENSMUSG00000040785.19, intron 31 of 45) 9226 ENSMUSG00000075829.1 ENSMUSG00000075829 ENSMUST00000101881 Gm23692 snRNA Interval_115217 chr4 94523148 94523545 + 0 NA intron (ENSMUSG00000028578.8, intron 4 of 5) protein_coding-intron (ENSMUSG00000028578.8, intron 4 of 5) 26314 ENSMUSG00000083359.1 ENSMUSG00000083359 ENSMUST00000118149 Gm12656 processed_pseudogene Interval_74890 chr17 57087117 57087954 + 0 NA exon (ENSMUSG00000062591.5, exon 1 of 4) protein_coding-exon (ENSMUSG00000062591.5, exon 1 of 4) 247 ENSMUSG00000062591.5 ENSMUSG00000062591 ENSMUST00000071135 Tubb4a protein_coding Interval_135252 chr6 37857001 37858397 + 0 NA Intergenic Intergenic 8865 ENSMUSG00000106853.1 ENSMUSG00000106853 ENSMUST00000201745 Gm7492 processed_pseudogene Interval_107861 chr3 116354435 116355728 + 0 NA intron (ENSMUSG00000033502.15, intron 5 of 14) protein_coding-intron (ENSMUSG00000033502.15, intron 5 of 15) 4978 ENSMUSG00000106005.1 ENSMUSG00000106005 ENSMUST00000196669 Gm29151 antisense Interval_38126 chr12 75817937 75819589 + 0 NA intron (ENSMUSG00000063450.14, intron 1 of 12) protein_coding-intron (ENSMUSG00000063450.14, intron 1 of 115) 413 ENSMUSG00000063450.14 ENSMUSG00000063450 ENSMUST00000151286 Syne2 protein_coding Interval_96732 chr2 127538857 127540133 + 0 NA TTS (ENSMUSG00000027376.15) protein_coding-TTS (ENSMUSG00000027376.15) 1919 ENSMUSG00000027376.15 ENSMUSG00000027376 ENSMUST00000155581 Prom2 protein_coding Interval_43201 chr13 25144257 25144442 + 0 NA intron (ENSMUSG00000035910.15, intron 7 of 9) protein_coding-intron (ENSMUSG00000035910.15, intron 7 of 9) -13285 ENSMUSG00000082667.1 ENSMUSG00000082667 ENSMUST00000118813 Gm11348 processed_pseudogene Interval_61366 chr15 81106624 81106896 + 0 NA intron (ENSMUSG00000042292.18, intron 2 of 13) protein_coding-intron (ENSMUSG00000042292.18, intron 2 of 3) 9085 ENSMUSG00000116321.1 ENSMUSG00000116321 ENSMUST00000230595 Gm49522 TEC Interval_26162 chr11 54826911 54827227 + 0 NA intron (ENSMUSG00000020268.14, intron 7 of 7) protein_coding-intron (ENSMUSG00000020268.14, intron 7 of 7) -2642 ENSMUSG00000088231.1 ENSMUSG00000088231 ENSMUST00000157606 Gm25426 snRNA Interval_86954 chr19 45169605 45170338 + 0 NA Intergenic Intergenic -10667 ENSMUSG00000092346.1 ENSMUSG00000092346 ENSMUST00000173437 Tlx1os antisense Interval_2862 chr1 46907586 46908012 + 0 NA Intergenic Intergenic -10920 ENSMUSG00000100160.1 ENSMUSG00000100160 ENSMUST00000185210 Gm28527 processed_pseudogene Interval_28001 chr11 72097183 72097787 + 0 NA intron (ENSMUSG00000040543.16, intron 3 of 7) protein_coding-intron (ENSMUSG00000040543.16, intron 3 of 19) 38293 ENSMUSG00000040543.16 ENSMUSG00000040543 ENSMUST00000142471 Pitpnm3 protein_coding Interval_47472 chr13 84950635 84951330 + 0 NA Intergenic Intergenic 23335 ENSMUSG00000114338.1 ENSMUSG00000114338 ENSMUST00000225386 Gm4059 processed_pseudogene Interval_149978 chr7 104166929 104168280 + 0 NA exon (ENSMUSG00000083513.2, exon 1 of 1) unprocessed_pseudogene-exon (ENSMUSG00000083513.2, exon 1 of 1) 738 ENSMUSG00000083513.2 ENSMUSG00000083513 ENSMUST00000121599 Olfr647-ps1 unprocessed_pseudogene Interval_150982 chr7 117375568 117376192 + 0 NA Intergenic Intergenic -5982 ENSMUSG00000108693.1 ENSMUSG00000108693 ENSMUST00000205957 Gm45153 TEC Interval_4134 chr1 69973511 69973686 + 0 NA intron (ENSMUSG00000053153.14, intron 1 of 4) protein_coding-intron (ENSMUSG00000053153.14, intron 10 of 16) -18469 ENSMUSG00000080524.1 ENSMUSG00000080524 ENSMUST00000116874 Gm23879 snRNA Interval_132968 chr5 149005966 149007631 + 0 NA promoter-TSS (ENSMUSG00000086610.1) lincRNA-promoter-TSS (ENSMUSG00000086610.1) -164 ENSMUSG00000086610.1 ENSMUSG00000086610 ENSMUST00000124198 Gm15408 lincRNA Interval_68230 chr16 69951448 69952189 + 0 NA Intergenic Intergenic -91332 ENSMUSG00000063163.13 ENSMUSG00000063163 ENSMUST00000164146 Speer2 protein_coding Interval_86743 chr19 43530093 43531163 + 0 NA intron (ENSMUSG00000118221.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000118221.1, intron 1 of 1) 2316 ENSMUSG00000118221.1 ENSMUSG00000118221 ENSMUST00000236043 Gm50194 lincRNA Interval_134427 chr6 28584984 28585394 + 0 NA intron (ENSMUSG00000001424.14, intron 1 of 4) protein_coding-intron (ENSMUSG00000001424.14, intron 10 of 23) 17117 ENSMUSG00000103132.1 ENSMUSG00000103132 ENSMUST00000194736 Gm37978 TEC Interval_141371 chr6 127757743 127758038 + 0 NA intron (ENSMUSG00000030350.8, intron 1 of 9) protein_coding-intron (ENSMUSG00000030350.8, intron 1 of 9) -5858 ENSMUSG00000106833.1 ENSMUSG00000106833 ENSMUST00000200687 Gm42739 processed_pseudogene Interval_20372 chr10 117162728 117162959 + 0 NA Intergenic Intergenic -14348 ENSMUSG00000020170.4 ENSMUSG00000020170 ENSMUST00000219104 Frs2 protein_coding Interval_74583 chr17 53536009 53536743 + 0 NA intron (ENSMUSG00000044957.3, intron 1 of 2) protein_coding-intron (ENSMUSG00000044957.3, intron 1 of 2) 3075 ENSMUSG00000044957.3 ENSMUSG00000044957 ENSMUST00000056198 Pp2d1 protein_coding Interval_97286 chr2 133020207 133021142 + 0 NA Intergenic Intergenic 12187 ENSMUSG00000065050.1 ENSMUSG00000065050 ENSMUST00000083116 Gm25704 snRNA Interval_13954 chr10 25000015 25001373 + 0 NA intron (ENSMUSG00000111970.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000111970.1, intron 1 of 1) 674 ENSMUSG00000111970.1 ENSMUSG00000111970 ENSMUST00000218700 Gm47715 lincRNA Interval_110105 chr3 153341051 153341668 + 0 NA intron (ENSMUSG00000052544.9, intron 3 of 4) protein_coding-intron (ENSMUSG00000052544.9, intron 2 of 2) 27646 ENSMUSG00000099114.1 ENSMUSG00000099114 ENSMUST00000184201 Gm27405 miRNA Interval_124952 chr5 61777478 61779040 + 0 NA Intergenic Intergenic -30557 ENSMUSG00000089992.3 ENSMUSG00000089992 ENSMUST00000053876 G6pd2 protein_coding Interval_33365 chr11 116138312 116139144 + 0 NA promoter-TSS (ENSMUSG00000020775.13) protein_coding-promoter-TSS (ENSMUSG00000020775.13) -4272 ENSMUSG00000020775.13 ENSMUSG00000020775 ENSMUST00000138457 Mrpl38 protein_coding Interval_73420 chr17 37108944 37109421 + 0 NA Intergenic Intergenic -4673 ENSMUSG00000092339.1 ENSMUSG00000092339 ENSMUST00000174626 Gm4831 processed_pseudogene Interval_95443 chr2 109389997 109390186 + 0 NA Intergenic Intergenic 68642 ENSMUSG00000084167.1 ENSMUSG00000084167 ENSMUST00000119899 Gm13924 processed_pseudogene Interval_167566 chr9 70497098 70497513 + 0 NA intron (ENSMUSG00000032217.13, intron 1 of 4) protein_coding-intron (ENSMUSG00000032217.13, intron 2 of 14) -19895 ENSMUSG00000088284.1 ENSMUSG00000088284 ENSMUST00000157659 Gm23588 snRNA Interval_71730 chr17 25732189 25732695 + 0 NA TTS (ENSMUSG00000041199.3) protein_coding-TTS (ENSMUSG00000041199.3) -3600 ENSMUSG00000041062.7 ENSMUSG00000041062 ENSMUST00000047098 Mslnl protein_coding Interval_155723 chr8 36520286 36521340 + 0 NA Intergenic Intergenic 31622 ENSMUSG00000039620.17 ENSMUSG00000039620 ENSMUST00000125492 Trmt9b protein_coding Interval_12516 chr1 194746502 194747505 + 0 NA intron (ENSMUSG00000026640.12, intron 5 of 31) protein_coding-intron (ENSMUSG00000026640.12, intron 5 of 31) 14296 ENSMUSG00000103776.1 ENSMUSG00000103776 ENSMUST00000194966 2900035J10Rik TEC Interval_155717 chr8 36402790 36403852 + 0 NA Intergenic Intergenic 2923 ENSMUSG00000088051.1 ENSMUSG00000088051 ENSMUST00000157426 Gm26150 snRNA Interval_21005 chr10 123161002 123161331 + 0 NA TTS (ENSMUSG00000020124.10) protein_coding-TTS (ENSMUSG00000020124.10) 17518 ENSMUSG00000112879.1 ENSMUSG00000112879 ENSMUST00000219693 Gm47726 processed_pseudogene Interval_77249 chr17 87576950 87577395 + 0 NA Intergenic Intergenic -5518 ENSMUSG00000117414.1 ENSMUSG00000117414 ENSMUST00000234992 Gm46587 lincRNA Interval_4394 chr1 73797785 73797990 + 0 NA intron (ENSMUSG00000101344.1, intron 7 of 7) lincRNA-intron (ENSMUSG00000101344.1, intron 7 of 7) 34177 ENSMUSG00000088666.1 ENSMUSG00000088666 ENSMUST00000158041 Gm25329 rRNA Interval_102178 chr3 19227713 19228587 + 0 NA intron (ENSMUSG00000069094.12, intron 1 of 1) protein_coding-intron (ENSMUSG00000069094.12, intron 12 of 12) 370 ENSMUSG00000087108.1 ENSMUSG00000087108 ENSMUST00000141455 Gm16093 antisense Interval_51292 chr14 25794153 25795384 + 0 NA Intergenic Intergenic 15113 ENSMUSG00000099057.1 ENSMUSG00000099057 ENSMUST00000184296 Gm27185 processed_pseudogene Interval_161690 chr8 122074128 122075198 + 0 NA intron (ENSMUSG00000092329.1, intron 1 of 15) protein_coding-intron (ENSMUSG00000092329.1, intron 1 of 15) 96639 ENSMUSG00000099140.1 ENSMUSG00000099140 ENSMUST00000184699 Mir7237 miRNA Interval_36001 chr12 33200913 33203750 + 0 NA intron (ENSMUSG00000079143.3, intron 3 of 4) protein_coding-intron (ENSMUSG00000020564.17, intron 1 of 2) 26523 ENSMUSG00000079143.3 ENSMUSG00000079143 ENSMUST00000155877 Atxn7l1os1 antisense Interval_130860 chr5 132700681 132701756 + 0 NA Intergenic Intergenic -94935 ENSMUSG00000103500.1 ENSMUSG00000103500 ENSMUST00000192042 Gm38373 TEC Interval_66809 chr16 37802726 37803336 + 0 NA intron (ENSMUSG00000022816.11, intron 1 of 2) protein_coding-intron (ENSMUSG00000022816.11, intron 2 of 10) 25976 ENSMUSG00000022816.11 ENSMUSG00000022816 ENSMUST00000123077 Fstl1 protein_coding Interval_127564 chr5 105353525 105355257 + 0 NA Intergenic Intergenic -10462 ENSMUSG00000092021.8 ENSMUSG00000092021 ENSMUST00000171587 Gbp11 polymorphic_pseudogene Interval_48639 chr13 100780327 100780535 + 0 NA exon (ENSMUSG00000041431.16, exon 1 of 2) protein_coding-exon (ENSMUSG00000041431.16, exon 1 of 2) -4648 ENSMUSG00000045273.8 ENSMUSG00000045273 ENSMUST00000136694 Cenph protein_coding Interval_4403 chr1 73938957 73939187 + 0 NA intron (ENSMUSG00000055322.16, intron 21 of 32) protein_coding-intron (ENSMUSG00000055322.16, intron 21 of 34) -83497 ENSMUSG00000098504.1 ENSMUSG00000098504 ENSMUST00000183826 Mir6351 miRNA Interval_55507 chr14 89609362 89610329 + 0 NA Intergenic Intergenic -96960 ENSMUSG00000077408.1 ENSMUSG00000077408 ENSMUST00000104220 Gm25415 snoRNA Interval_170660 chr9 109941761 109942062 + 0 NA intron (ENSMUSG00000032479.15, intron 1 of 3) protein_coding-intron (ENSMUSG00000032479.15, intron 1 of 18) -17161 ENSMUSG00000105191.1 ENSMUSG00000105191 ENSMUST00000197587 Gm4644 processed_pseudogene Interval_99033 chr2 156763189 156765179 + 0 NA exon (ENSMUSG00000061689.15, exon 7 of 7) protein_coding-exon (ENSMUSG00000061689.15, exon 7 of 7) -11270 ENSMUSG00000067818.6 ENSMUSG00000067818 ENSMUST00000131622 Myl9 protein_coding Interval_26277 chr11 55607199 55608819 + 0 NA promoter-TSS (ENSMUSG00000000263.15) protein_coding-promoter-TSS (ENSMUSG00000000263.15) -276 ENSMUSG00000000263.15 ENSMUSG00000000263 ENSMUST00000102716 Glra1 protein_coding Interval_101578 chr3 7082659 7083407 + 0 NA Intergenic Intergenic 105765 ENSMUSG00000089220.1 ENSMUSG00000089220 ENSMUST00000158595 Gm22074 snoRNA Interval_149264 chr7 96795729 96795950 + 0 NA promoter-TSS (ENSMUSG00000048078.16) protein_coding-promoter-TSS (ENSMUSG00000048078.16) -802 ENSMUSG00000048078.16 ENSMUSG00000048078 ENSMUST00000147659 Tenm4 protein_coding Interval_139934 chr6 112897250 112897488 + 0 NA intron (ENSMUSG00000030257.16, intron 1 of 21) protein_coding-intron (ENSMUSG00000030257.16, intron 1 of 9) -49668 ENSMUSG00000108103.1 ENSMUSG00000108103 ENSMUST00000204406 Gm44081 lincRNA Interval_121112 chr4 153187658 153189975 + 0 NA Intergenic Intergenic -29360 ENSMUSG00000087454.1 ENSMUSG00000087454 ENSMUST00000126141 Gm13174 lincRNA Interval_171889 chr9 122127245 122127555 + 0 NA exon (ENSMUSG00000111605.1, exon 1 of 1) TEC-exon (ENSMUSG00000111605.1, exon 1 of 1) 106 ENSMUSG00000111605.1 ENSMUSG00000111605 ENSMUST00000217287 4632418H02Rik TEC Interval_105188 chr3 83591306 83591563 + 0 NA Intergenic Intergenic -17312 ENSMUSG00000101334.1 ENSMUSG00000101334 ENSMUST00000185938 1700028M03Rik lincRNA Interval_7477 chr1 131712069 131712815 + 0 NA TTS (ENSMUSG00000052688.12) protein_coding-TTS (ENSMUSG00000052688.12) 23704 ENSMUSG00000052688.12 ENSMUSG00000052688 ENSMUST00000130848 Rab7b protein_coding Interval_46846 chr13 72345277 72346785 + 0 NA Intergenic Intergenic -4190 ENSMUSG00000113594.1 ENSMUSG00000113594 ENSMUST00000220890 Gm4052 processed_pseudogene Interval_155036 chr8 25847083 25848570 + 0 NA promoter-TSS (ENSMUSG00000031575.18) protein_coding-promoter-TSS (ENSMUSG00000031575.18) -14281 ENSMUSG00000031575.18 ENSMUSG00000031575 ENSMUST00000211188 Ash2l protein_coding Interval_11268 chr1 180596974 180597484 + 0 NA promoter-TSS (ENSMUSG00000026496.11) protein_coding-promoter-TSS (ENSMUSG00000026496.11) -1759 ENSMUSG00000026496.11 ENSMUSG00000026496 ENSMUST00000195560 Parp1 protein_coding Interval_173633 chrX 101303649 101304437 + 0 NA intron (ENSMUSG00000031302.16, intron 3 of 7) protein_coding-intron (ENSMUSG00000031302.16, intron 2 of 6) 4849 ENSMUSG00000031302.16 ENSMUSG00000031302 ENSMUST00000144860 Nlgn3 protein_coding Interval_5542 chr1 89701302 89701592 + 0 NA intron (ENSMUSG00000055013.16, intron 9 of 16) protein_coding-intron (ENSMUSG00000055013.16, intron 9 of 17) 16645 ENSMUSG00000088775.1 ENSMUSG00000088775 ENSMUST00000158150 Gm26037 misc_RNA Interval_23474 chr11 22824257 22825046 + 0 NA intron (ENSMUSG00000051650.11, intron 1 of 5) protein_coding-intron (ENSMUSG00000051650.11, intron 1 of 5) -14648 ENSMUSG00000092455.1 ENSMUSG00000092455 ENSMUST00000174690 Gm20456 processed_transcript Interval_91487 chr2 39351570 39352110 + 0 NA Intergenic Intergenic -43573 ENSMUSG00000083401.1 ENSMUSG00000083401 ENSMUST00000120391 Gm13506 unprocessed_pseudogene Interval_89236 chr2 18285399 18285623 + 0 NA intron (ENSMUSG00000026740.12, intron 1 of 4) protein_coding-intron (ENSMUSG00000026740.12, intron 6 of 10) -35668 ENSMUSG00000083070.2 ENSMUSG00000083070 ENSMUST00000120519 Gm13350 processed_pseudogene Interval_101273 chr2 180098026 180098381 + 0 NA Intergenic Intergenic -1710 ENSMUSG00000090589.1 ENSMUSG00000090589 ENSMUST00000172211 Gm17180 antisense Interval_48517 chr13 99653651 99654669 + 0 NA Intergenic Intergenic 12186 ENSMUSG00000103545.1 ENSMUSG00000103545 ENSMUST00000193492 1700012J22Rik TEC Interval_133325 chr5 151726767 151728250 + 0 NA Intergenic Intergenic -25040 ENSMUSG00000092806.2 ENSMUSG00000092806 ENSMUST00000175065 Gm26463 miRNA Interval_11503 chr1 182296952 182298008 + 0 NA intron (ENSMUSG00000100147.2, intron 1 of 2) lincRNA-intron (ENSMUSG00000100147.2, intron 1 of 2) 9490 ENSMUSG00000100147.2 ENSMUSG00000100147 ENSMUST00000185216 1700047M11Rik lincRNA Interval_31068 chr11 97972335 97972914 + 0 NA intron (ENSMUSG00000017417.14, intron 2 of 13) protein_coding-intron (ENSMUSG00000017417.14, intron 2 of 13) 3832 ENSMUSG00000082715.1 ENSMUSG00000082715 ENSMUST00000118176 Gm11633 processed_pseudogene Interval_129672 chr5 121639649 121640717 + 0 NA TTS (ENSMUSG00000029456.12) protein_coding-TTS (ENSMUSG00000029456.12) -7404 ENSMUSG00000029456.12 ENSMUSG00000029456 ENSMUST00000137231 Acad10 protein_coding Interval_86982 chr19 45329211 45330718 + 0 NA intron (ENSMUSG00000100417.2, intron 6 of 6) lincRNA-intron (ENSMUSG00000100417.2, intron 1 of 3) 12071 ENSMUSG00000102057.1 ENSMUSG00000102057 ENSMUST00000191181 Gm29594 lincRNA Interval_17959 chr10 81073365 81073842 + 0 NA exon (ENSMUSG00000004929.12, exon 2 of 2) protein_coding-exon (ENSMUSG00000004929.12, exon 2 of 2) 3444 ENSMUSG00000004929.12 ENSMUSG00000004929 ENSMUST00000166404 Thop1 protein_coding Interval_79441 chr18 31902295 31902715 + 0 NA intron (ENSMUSG00000024400.16, intron 19 of 21) protein_coding-intron (ENSMUSG00000024400.16, intron 19 of 21) 9319 ENSMUSG00000044982.7 ENSMUSG00000044982 ENSMUST00000054984 Sft2d3 protein_coding Interval_36784 chr12 53924378 53924592 + 0 NA intron (ENSMUSG00000021010.9, intron 4 of 10) protein_coding-intron (ENSMUSG00000021010.9, intron 5 of 11) 154907 ENSMUSG00000099407.1 ENSMUSG00000099407 ENSMUST00000185390 1700060O08Rik antisense Interval_93501 chr2 73580255 73580450 + 0 NA promoter-TSS (ENSMUSG00000027107.3) protein_coding-promoter-TSS (ENSMUSG00000027107.3) -14 ENSMUSG00000027107.3 ENSMUSG00000027107 ENSMUST00000028515 Chrna1 protein_coding Interval_124505 chr5 49667735 49668088 + 0 NA Intergenic Intergenic 115753 ENSMUSG00000083477.2 ENSMUSG00000083477 ENSMUST00000120352 Gm5555 processed_pseudogene Interval_127842 chr5 108143710 108144807 + 0 NA TTS (ENSMUSG00000105554.1) processed_pseudogene-TTS (ENSMUSG00000105554.1) 2649 ENSMUSG00000105554.1 ENSMUSG00000105554 ENSMUST00000200167 Gm7118 processed_pseudogene Interval_53401 chr14 56963562 56965237 + 0 NA Intergenic Intergenic 14845 ENSMUSG00000021945.9 ENSMUSG00000021945 ENSMUST00000226025 Zmym2 protein_coding Interval_11819 chr1 185779738 185779937 + 0 NA Intergenic Intergenic 35034 ENSMUSG00000103799.1 ENSMUSG00000103799 ENSMUST00000195210 Gm38093 lincRNA Interval_113423 chr4 54897005 54897219 + 0 NA Intergenic Intergenic 43984 ENSMUSG00000082111.1 ENSMUSG00000082111 ENSMUST00000120731 Gm12479 processed_pseudogene Interval_159394 chr8 94277987 94279001 + 0 NA intron (ENSMUSG00000032939.14, intron 1 of 20) protein_coding-intron (ENSMUSG00000032939.14, intron 3 of 21) 5068 ENSMUSG00000110442.1 ENSMUSG00000110442 ENSMUST00000212137 Gm45804 TEC Interval_58622 chr15 36625381 36626209 + 0 NA Intergenic Intergenic -3365 ENSMUSG00000115037.1 ENSMUSG00000115037 ENSMUST00000228278 Gm49262 lincRNA Interval_77627 chr17 93312650 93314076 + 0 NA Intergenic Intergenic 3898 ENSMUSG00000117362.1 ENSMUSG00000117362 ENSMUST00000234454 Gm9665 processed_pseudogene Interval_94187 chr2 84918845 84919230 + 0 NA Intergenic Intergenic -9037 ENSMUSG00000092843.1 ENSMUSG00000092843 ENSMUST00000175102 Gm24332 miRNA Interval_86002 chr19 34851203 34852874 + 0 NA intron (ENSMUSG00000033610.16, intron 1 of 6) protein_coding-intron (ENSMUSG00000033610.16, intron 1 of 6) 25815 ENSMUSG00000033610.16 ENSMUSG00000033610 ENSMUST00000237577 Pank1 protein_coding Interval_28702 chr11 77827327 77828324 + 0 NA TTS (ENSMUSG00000000631.20) protein_coding-TTS (ENSMUSG00000000631.20) 26475 ENSMUSG00000000631.20 ENSMUSG00000000631 ENSMUST00000142571 Myo18a protein_coding Interval_161141 chr8 117740488 117741115 + 0 NA intron (ENSMUSG00000031844.8, intron 2 of 2) protein_coding-intron (ENSMUSG00000031844.8, intron 2 of 4) 7459 ENSMUSG00000110494.1 ENSMUSG00000110494 ENSMUST00000212910 Gm31774 antisense Interval_154189 chr8 13299838 13300551 + 0 NA intron (ENSMUSG00000038497.7, intron 4 of 4) protein_coding-intron (ENSMUSG00000038497.7, intron 6 of 12) 11956 ENSMUSG00000038497.7 ENSMUSG00000038497 ENSMUST00000210750 Tmco3 protein_coding Interval_22015 chr11 5787981 5789361 + 0 NA intron (ENSMUSG00000020476.14, intron 1 of 12) protein_coding-intron (ENSMUSG00000020476.14, intron 1 of 12) 183 ENSMUSG00000020476.14 ENSMUSG00000020476 ENSMUST00000102928 Dbnl protein_coding Interval_4561 chr1 75033418 75034652 + 0 NA intron (ENSMUSG00000026162.7, intron 2 of 4) protein_coding-intron (ENSMUSG00000026162.7, intron 2 of 4) 79783 ENSMUSG00000103145.1 ENSMUSG00000103145 ENSMUST00000194616 Gm37744 TEC Interval_92426 chr2 59660872 59661078 + 0 NA intron (ENSMUSG00000035168.16, intron 1 of 25) protein_coding-intron (ENSMUSG00000035168.16, intron 2 of 26) -96291 ENSMUSG00000081157.1 ENSMUSG00000081157 ENSMUST00000118837 Gm13552 processed_pseudogene Interval_8401 chr1 138856239 138857104 + 0 NA exon (ENSMUSG00000079283.2, exon 1 of 3) protein_coding-exon (ENSMUSG00000079283.2, exon 1 of 3) -2321 ENSMUSG00000079283.2 ENSMUSG00000079283 ENSMUST00000193374 2310009B15Rik protein_coding Interval_19911 chr10 111156229 111156877 + 0 NA exon (ENSMUSG00000111968.1, exon 1 of 1) processed_pseudogene-exon (ENSMUSG00000111968.1, exon 1 of 1) 337 ENSMUSG00000111968.1 ENSMUSG00000111968 ENSMUST00000217847 Gm8873 processed_pseudogene Interval_154817 chr8 23669219 23670225 + 0 NA promoter-TSS (ENSMUSG00000037492.16) protein_coding-promoter-TSS (ENSMUSG00000037492.16) 61 ENSMUSG00000037492.16 ENSMUSG00000037492 ENSMUST00000146774 Zmat4 protein_coding Interval_66855 chr16 38150098 38151260 + 0 NA intron (ENSMUSG00000022812.14, intron 2 of 5) protein_coding-intron (ENSMUSG00000022812.14, intron 2 of 10) -7329 ENSMUSG00000095395.2 ENSMUSG00000095395 ENSMUST00000179548 Gm25617 snoRNA Interval_12166 chr1 190363237 190363980 + 0 NA Intergenic Intergenic -40037 ENSMUSG00000103644.1 ENSMUSG00000103644 ENSMUST00000193966 Gm29678 lincRNA Interval_84112 chr19 7267347 7269412 + 0 NA promoter-TSS (ENSMUSG00000024968.14) protein_coding-promoter-TSS (ENSMUSG00000024968.14) 1054 ENSMUSG00000024968.14 ENSMUSG00000024968 ENSMUST00000134167 Rcor2 protein_coding Interval_93561 chr2 74201132 74202080 + 0 NA Intergenic Intergenic 65849 ENSMUSG00000084791.1 ENSMUSG00000084791 ENSMUST00000132332 Gm13667 lincRNA Interval_12275 chr1 191325514 191326951 + 0 NA intron (ENSMUSG00000026627.7, intron 1 of 7) protein_coding-intron (ENSMUSG00000026627.7, intron 1 of 7) 320 ENSMUSG00000026627.7 ENSMUSG00000026627 ENSMUST00000027940 Pacc1 protein_coding Interval_114140 chr4 64293225 64294181 + 0 NA Intergenic Intergenic -17100 ENSMUSG00000085032.1 ENSMUSG00000085032 ENSMUST00000141162 Gm11217 lincRNA Interval_165452 chr9 48238168 48238773 + 0 NA intron (ENSMUSG00000044229.9, intron 2 of 8) protein_coding-intron (ENSMUSG00000044229.9, intron 1 of 10) -79505 ENSMUSG00000110924.1 ENSMUSG00000110924 ENSMUST00000214538 Gm40518 lincRNA Interval_51350 chr14 26911842 26912268 + 0 NA exon (ENSMUSG00000021898.16, exon 8 of 10) protein_coding-exon (ENSMUSG00000021898.16, exon 8 of 10) -14400 ENSMUSG00000114785.1 ENSMUSG00000114785 ENSMUST00000223843 Gm41115 processed_pseudogene Interval_54945 chr14 76413852 76415968 + 0 NA promoter-TSS (ENSMUSG00000022010.19) protein_coding-promoter-TSS (ENSMUSG00000022010.19) -3918 ENSMUSG00000022010.19 ENSMUSG00000022010 ENSMUST00000133224 Tsc22d1 protein_coding Interval_72183 chr17 28466473 28467225 + 0 NA intron (ENSMUSG00000024222.17, intron 1 of 10) protein_coding-intron (ENSMUSG00000024222.17, intron 1 of 10) -5754 ENSMUSG00000117294.1 ENSMUSG00000117294 ENSMUST00000233091 Gm49839 TEC Interval_136183 chr6 51838294 51838601 + 0 NA Intergenic Intergenic 33482 ENSMUSG00000059182.7 ENSMUSG00000059182 ENSMUST00000203313 Skap2 protein_coding Interval_158812 chr8 86820408 86821524 + 0 NA intron (ENSMUSG00000031652.11, intron 1 of 1) protein_coding-intron (ENSMUSG00000031652.11, intron 1 of 1) 31454 ENSMUSG00000031652.11 ENSMUSG00000031652 ENSMUST00000210029 N4bp1 protein_coding Interval_75431 chr17 66512407 66512663 + 0 NA intron (ENSMUSG00000023460.13, intron 1 of 5) protein_coding-intron (ENSMUSG00000023460.13, intron 1 of 5) 7135 ENSMUSG00000023460.13 ENSMUSG00000023460 ENSMUST00000146279 Rab12 protein_coding Interval_84355 chr19 10340733 10341675 + 0 NA Intergenic Intergenic -48279 ENSMUSG00000024743.16 ENSMUSG00000024743 ENSMUST00000235717 Syt7 protein_coding Interval_130026 chr5 123755606 123755821 + 0 NA exon (ENSMUSG00000029414.11, exon 3 of 64) protein_coding-exon (ENSMUSG00000029414.11, exon 3 of 64) 5997 ENSMUSG00000029414.11 ENSMUSG00000029414 ENSMUST00000197002 Kntc1 protein_coding Interval_110476 chr3 159126318 159126528 + 0 NA intron (ENSMUSG00000106053.1, intron 2 of 4) lincRNA-intron (ENSMUSG00000106053.1, intron 2 of 4) 50059 ENSMUSG00000106053.1 ENSMUSG00000106053 ENSMUST00000197341 Gm20752 lincRNA Interval_6070 chr1 95762240 95762468 + 0 NA Intergenic Intergenic 24158 ENSMUSG00000102718.1 ENSMUSG00000102718 ENSMUST00000194989 Gm37761 TEC Interval_13734 chr10 21551369 21551675 + 0 NA Intergenic Intergenic -64798 ENSMUSG00000050844.5 ENSMUSG00000050844 ENSMUST00000186635 1700020N01Rik protein_coding Interval_160525 chr8 110301212 110301508 + 0 NA intron (ENSMUSG00000059854.8, intron 4 of 25) protein_coding-intron (ENSMUSG00000059854.8, intron 4 of 86) -33898 ENSMUSG00000097409.1 ENSMUSG00000097409 ENSMUST00000181456 Gm26832 antisense Interval_166122 chr9 56866299 56866670 + 0 NA intron (ENSMUSG00000032911.6, intron 1 of 4) protein_coding-intron (ENSMUSG00000032911.6, intron 1 of 9) -1805 ENSMUSG00000045620.7 ENSMUSG00000045620 ENSMUST00000215694 Odf3l1 protein_coding Interval_84065 chr19 7027005 7028191 + 0 NA intron (ENSMUSG00000024966.9, intron 8 of 13) protein_coding-intron (ENSMUSG00000024966.9, intron 8 of 13) -8253 ENSMUSG00000024965.9 ENSMUSG00000024965 ENSMUST00000238171 Fermt3 protein_coding Interval_21559 chr10 129907712 129908374 + 0 NA Intergenic Intergenic -2176 ENSMUSG00000061961.3 ENSMUSG00000061961 ENSMUST00000071557 Olfr815 protein_coding Interval_134515 chr6 29278477 29279261 + 0 NA promoter-TSS (ENSMUSG00000079652.8) protein_coding-promoter-TSS (ENSMUSG00000079652.8) -2274 ENSMUSG00000079652.8 ENSMUSG00000079652 ENSMUST00000167608 Fam71f2 protein_coding Interval_116021 chr4 107051374 107051610 + 0 NA Intergenic Intergenic 8458 ENSMUSG00000028622.11 ENSMUSG00000028622 ENSMUST00000138788 Mrpl37 protein_coding Interval_26855 chr11 61104033 61104902 + 0 NA Intergenic Intergenic -22291 ENSMUSG00000010142.12 ENSMUSG00000010142 ENSMUST00000123378 Tnfrsf13b protein_coding Interval_20179 chr10 115444822 115445507 + 0 NA Intergenic Intergenic 16657 ENSMUSG00000034163.10 ENSMUSG00000034163 ENSMUST00000141246 Zfc3h1 protein_coding Interval_2143 chr1 36700789 36701153 + 0 NA TTS (ENSMUSG00000037351.9) protein_coding-TTS (ENSMUSG00000037351.9) 8976 ENSMUSG00000037351.9 ENSMUSG00000037351 ENSMUST00000162662 Actr1b protein_coding Interval_174374 chrX 150656099 150657533 + 0 NA promoter-TSS (ENSMUSG00000025272.16) protein_coding-promoter-TSS (ENSMUSG00000025272.16) -5096 ENSMUSG00000025272.16 ENSMUSG00000025272 ENSMUST00000148604 Tro protein_coding Interval_117439 chr4 123686335 123687633 + 0 NA Intergenic Intergenic 21103 ENSMUSG00000087307.1 ENSMUSG00000087307 ENSMUST00000138861 Gm12925 antisense Interval_107176 chr3 104326828 104327710 + 0 NA Intergenic Intergenic 39344 ENSMUSG00000022187.2 ENSMUSG00000022187 ENSMUST00000056145 Gm5546 lincRNA Interval_90483 chr2 30733706 30734717 + 0 NA Intergenic Intergenic 13001 ENSMUSG00000093091.1 ENSMUSG00000093091 ENSMUST00000175350 Mir3089 miRNA Interval_82315 chr18 70579155 70579389 + 0 NA intron (ENSMUSG00000024513.16, intron 1 of 2) protein_coding-intron (ENSMUSG00000024513.16, intron 1 of 6) -13983 ENSMUSG00000024513.16 ENSMUSG00000024513 ENSMUST00000128555 Mbd2 protein_coding Interval_15859 chr10 58478937 58479121 + 0 NA exon (ENSMUSG00000003226.7, exon 20 of 29) protein_coding-exon (ENSMUSG00000003226.7, exon 20 of 29) -19176 ENSMUSG00000038010.9 ENSMUSG00000038010 ENSMUST00000217992 Ccdc138 protein_coding Interval_170176 chr9 105940840 105941899 + 0 NA intron (ENSMUSG00000091345.9, intron 3 of 40) protein_coding-intron (ENSMUSG00000091345.9, intron 3 of 39) 19274 ENSMUSG00000091345.9 ENSMUSG00000091345 ENSMUST00000189127 Col6a5 protein_coding Interval_91776 chr2 49481099 49482356 + 0 NA intron (ENSMUSG00000069495.12, intron 1 of 13) protein_coding-intron (ENSMUSG00000069495.12, intron 1 of 13) -47148 ENSMUSG00000069495.12 ENSMUSG00000069495 ENSMUST00000152485 Epc2 protein_coding Interval_41882 chr13 3865208 3866668 + 0 NA Intergenic Intergenic 11670 ENSMUSG00000099269.3 ENSMUSG00000099269 ENSMUST00000184271 Calm5 protein_coding Interval_96575 chr2 125840457 125840977 + 0 NA intron (ENSMUSG00000027206.13, intron 6 of 12) protein_coding-intron (ENSMUSG00000027206.13, intron 6 of 12) 18346 ENSMUSG00000027206.13 ENSMUSG00000027206 ENSMUST00000152683 Cops2 protein_coding Interval_87838 chr19 56396811 56397887 + 0 NA promoter-TSS (ENSMUSG00000025076.11) protein_coding-promoter-TSS (ENSMUSG00000025076.11) -17484 ENSMUSG00000049134.15 ENSMUSG00000049134 ENSMUST00000166203 Nrap protein_coding Interval_160856 chr8 113883528 113885120 + 0 NA Intergenic Intergenic -39020 ENSMUSG00000053399.9 ENSMUSG00000053399 ENSMUST00000212527 Adamts18 protein_coding Interval_117194 chr4 120431994 120433531 + 0 NA intron (ENSMUSG00000000085.16, intron 1 of 1) protein_coding-intron (ENSMUSG00000000085.16, intron 1 of 16) 27381 ENSMUSG00000000085.16 ENSMUSG00000000085 ENSMUST00000133169 Scmh1 protein_coding Interval_55349 chr14 84263621 84264395 + 0 NA Intergenic Intergenic -127302 ENSMUSG00000115227.1 ENSMUSG00000115227 ENSMUST00000227972 Gm49057 processed_pseudogene Interval_86495 chr19 41103293 41103538 + 0 NA intron (ENSMUSG00000025013.15, intron 13 of 20) protein_coding-intron (ENSMUSG00000025013.15, intron 13 of 20) -35292 ENSMUSG00000050121.9 ENSMUSG00000050121 ENSMUST00000087176 Opalin protein_coding Interval_18659 chr10 88855708 88855934 + 0 NA Intergenic Intergenic -29038 ENSMUSG00000004356.8 ENSMUSG00000004356 ENSMUST00000220439 Utp20 protein_coding Interval_89159 chr2 17714817 17716037 + 0 NA intron (ENSMUSG00000053702.16, intron 2 of 6) protein_coding-intron (ENSMUSG00000053702.16, intron 2 of 6) 82557 ENSMUSG00000081851.1 ENSMUSG00000081851 ENSMUST00000120245 Gm13323 processed_pseudogene Interval_48240 chr13 97372414 97372982 + 0 NA Intergenic Intergenic -3536 ENSMUSG00000114425.1 ENSMUSG00000114425 ENSMUST00000223964 Gm33447 lincRNA Interval_64683 chr16 14158932 14160047 + 0 NA promoter-TSS (ENSMUSG00000060657.8) protein_coding-promoter-TSS (ENSMUSG00000060657.8) -137 ENSMUSG00000070074.1 ENSMUSG00000070074 ENSMUST00000093566 Mir484 miRNA Interval_162768 chr9 8795697 8795884 + 0 NA Intergenic Intergenic -54802 ENSMUSG00000111602.1 ENSMUSG00000111602 ENSMUST00000214779 Gm32014 lincRNA Interval_158319 chr8 81161149 81161648 + 0 NA Intergenic Intergenic 36950 ENSMUSG00000094615.2 ENSMUSG00000094615 ENSMUST00000178708 Gm4899 processed_pseudogene Interval_166592 chr9 61151156 61151362 + 0 NA Intergenic Intergenic 12744 ENSMUSG00000110998.1 ENSMUSG00000110998 ENSMUST00000216012 I730028E13Rik lincRNA Interval_62823 chr15 97236536 97237136 + 0 NA Intergenic Intergenic 10286 ENSMUSG00000048218.6 ENSMUSG00000048218 ENSMUST00000053106 Amigo2 protein_coding Interval_5551 chr1 89756112 89758022 + 0 NA intron (ENSMUSG00000055013.16, intron 11 of 16) protein_coding-intron (ENSMUSG00000055013.16, intron 11 of 17) -32096 ENSMUSG00000055013.16 ENSMUSG00000055013 ENSMUST00000212924 Agap1 protein_coding Interval_40599 chr12 105947502 105948600 + 0 NA Intergenic Intergenic 48210 ENSMUSG00000113835.1 ENSMUSG00000113835 ENSMUST00000220934 Gm19554 lincRNA Interval_83022 chr18 80554848 80555703 + 0 NA Intergenic Intergenic -11260 ENSMUSG00000118319.1 ENSMUSG00000118319 ENSMUST00000237325 Gm2176 transcribed_processed_pseudogene Interval_141786 chr6 134489333 134490084 + 0 NA intron (ENSMUSG00000030201.15, intron 7 of 22) protein_coding-intron (ENSMUSG00000030201.15, intron 7 of 22) -21947 ENSMUSG00000030201.15 ENSMUSG00000030201 ENSMUST00000203235 Lrp6 protein_coding Interval_58096 chr15 27859769 27861079 + 0 NA intron (ENSMUSG00000022263.10, intron 10 of 35) protein_coding-intron (ENSMUSG00000022263.10, intron 11 of 56) 4117 ENSMUSG00000115641.1 ENSMUSG00000115641 ENSMUST00000228765 Gm9891 TEC Interval_35545 chr12 24650794 24652424 + 0 NA promoter-TSS (ENSMUSG00000020653.12) protein_coding-promoter-TSS (ENSMUSG00000020653.12) -287 ENSMUSG00000020653.12 ENSMUSG00000020653 ENSMUST00000144046 Klf11 protein_coding Interval_172149 chrX 8015770 8016117 + 0 NA intron (ENSMUSG00000031163.2, intron 1 of 3) protein_coding-intron (ENSMUSG00000031163.2, intron 1 of 3) 2549 ENSMUSG00000031163.2 ENSMUSG00000031163 ENSMUST00000033503 Glod5 protein_coding Interval_1211 chr1 17163559 17163966 + 0 NA exon (ENSMUSG00000025777.8, exon 6 of 6) protein_coding-exon (ENSMUSG00000025777.8, exon 6 of 6) -4641 ENSMUSG00000099899.1 ENSMUSG00000099899 ENSMUST00000187817 Gm28784 lincRNA Interval_23988 chr11 29199995 29200277 + 0 NA intron (ENSMUSG00000020463.15, intron 2 of 2) protein_coding-intron (ENSMUSG00000020463.15, intron 8 of 15) 26389 ENSMUSG00000020463.15 ENSMUSG00000020463 ENSMUST00000148759 Ppp4r3b protein_coding Interval_170160 chr9 105692513 105694254 + 0 NA intron (ENSMUSG00000043719.14, intron 36 of 36) protein_coding-intron (ENSMUSG00000043719.14, intron 36 of 36) 11590 ENSMUSG00000032571.14 ENSMUSG00000032571 ENSMUST00000214254 Pik3r4 protein_coding Interval_84883 chr19 18598823 18599367 + 0 NA intron (ENSMUSG00000024725.13, intron 2 of 10) protein_coding-intron (ENSMUSG00000024725.13, intron 2 of 9) 17640 ENSMUSG00000080783.1 ENSMUSG00000080783 ENSMUST00000117398 Gm8250 processed_pseudogene Interval_42608 chr13 16696174 16697138 + 0 NA Intergenic Intergenic -57166 ENSMUSG00000113862.1 ENSMUSG00000113862 ENSMUST00000221660 Gm7537 processed_pseudogene Interval_154249 chr8 13797388 13797583 + 0 NA intron (ENSMUSG00000038398.8, intron 8 of 8) protein_coding-intron (ENSMUSG00000038398.8, intron 8 of 8) 11850 ENSMUSG00000038398.8 ENSMUSG00000038398 ENSMUST00000211643 Upf3a protein_coding Interval_70010 chr17 4402497 4402879 + 0 NA Intergenic Intergenic -232290 ENSMUSG00000116767.1 ENSMUSG00000116767 ENSMUST00000232624 4930517M08Rik lincRNA Interval_62543 chr15 94536926 94537302 + 0 NA intron (ENSMUSG00000033356.3, intron 2 of 2) protein_coding-intron (ENSMUSG00000033356.3, intron 2 of 8) 6379 ENSMUSG00000033356.3 ENSMUSG00000033356 ENSMUST00000134061 Pus7l protein_coding Interval_112800 chr4 45084008 45085140 + 0 NA promoter-TSS (ENSMUSG00000048232.12) protein_coding-promoter-TSS (ENSMUSG00000048232.12) 23540 ENSMUSG00000078713.8 ENSMUSG00000078713 ENSMUST00000107807 Tomm5 protein_coding Interval_19436 chr10 99235909 99236229 + 0 NA intron (ENSMUSG00000112902.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000111923.1, intron 2 of 3) 1547 ENSMUSG00000112902.1 ENSMUSG00000112902 ENSMUST00000220253 Gm48884 lincRNA Interval_42712 chr13 18457834 18459870 + 0 NA Intergenic Intergenic -61166 ENSMUSG00000009734.18 ENSMUSG00000009734 ENSMUST00000222900 Pou6f2 protein_coding Interval_77481 chr17 89751482 89752517 + 0 NA intron (ENSMUSG00000117511.1, intron 1 of 4) lincRNA-intron (ENSMUSG00000117511.1, intron 1 of 4) 527 ENSMUSG00000117511.1 ENSMUSG00000117511 ENSMUST00000234973 Gm50061 lincRNA Interval_145965 chr7 42712586 42712830 + 0 NA intron (ENSMUSG00000091594.2, intron 1 of 3) protein_coding-intron (ENSMUSG00000091594.2, intron 1 of 3) -6339 ENSMUSG00000091594.2 ENSMUSG00000091594 ENSMUST00000180131 Gm17067 protein_coding Interval_62728 chr15 96491326 96492598 + 0 NA Intergenic Intergenic -2615 ENSMUSG00000116253.1 ENSMUSG00000116253 ENSMUST00000229198 Gm41392 lincRNA Interval_49340 chr13 111345962 111346148 + 0 NA Intergenic Intergenic 15620 ENSMUSG00000081277.1 ENSMUSG00000081277 ENSMUST00000119271 Gm15285 processed_pseudogene Interval_162234 chr8 126327755 126328027 + 0 NA intron (ENSMUSG00000057060.8, intron 3 of 7) protein_coding-intron (ENSMUSG00000057060.8, intron 2 of 6) -94637 ENSMUSG00000051671.7 ENSMUSG00000051671 ENSMUST00000211868 Coa6 protein_coding Interval_152687 chr7 136265344 136266128 + 0 NA Intergenic Intergenic -2588 ENSMUSG00000110027.1 ENSMUSG00000110027 ENSMUST00000210209 C030029H02Rik lincRNA Interval_49113 chr13 108151738 108153181 + 0 NA intron (ENSMUSG00000068184.7, intron 1 of 3) protein_coding-intron (ENSMUSG00000068184.7, intron 1 of 3) 6025 ENSMUSG00000068184.7 ENSMUSG00000068184 ENSMUST00000225830 Ndufaf2 protein_coding Interval_38589 chr12 80299781 80299970 + 0 NA Intergenic Intergenic 40432 ENSMUSG00000112336.1 ENSMUSG00000112336 ENSMUST00000218666 Gm47766 antisense Interval_81656 chr18 62921865 62923337 + 0 NA promoter-TSS (ENSMUSG00000117671.1) bidirectional_promoter_lncRNA-promoter-TSS (ENSMUSG00000117671.1) 95 ENSMUSG00000071847.13 ENSMUSG00000071847 ENSMUST00000236605 Apcdd1 protein_coding Interval_34639 chr12 8281140 8281904 + 0 NA exon (ENSMUSG00000037669.15, exon 5 of 5) protein_coding-exon (ENSMUSG00000037669.15, exon 5 of 5) 12172 ENSMUSG00000112441.1 ENSMUSG00000112441 ENSMUST00000217967 Gm48898 lincRNA Interval_95420 chr2 109031977 109032338 + 0 NA Intergenic Intergenic 9470 ENSMUSG00000087544.1 ENSMUSG00000087544 ENSMUST00000153283 Gm13923 lincRNA Interval_56812 chr14 122234407 122235370 + 0 NA intron (ENSMUSG00000025545.10, intron 1 of 7) protein_coding-intron (ENSMUSG00000025545.10, intron 1 of 7) -1234 ENSMUSG00000100585.1 ENSMUSG00000100585 ENSMUST00000187423 1700108J01Rik antisense Interval_15046 chr10 42196682 42197881 + 0 NA TTS (ENSMUSG00000048756.11) protein_coding-TTS (ENSMUSG00000048756.11) 61085 ENSMUSG00000048756.11 ENSMUSG00000048756 ENSMUST00000105501 Foxo3 protein_coding Interval_146445 chr7 45951406 45951600 + 0 NA Intergenic Intergenic 17653 ENSMUSG00000109673.1 ENSMUSG00000109673 ENSMUST00000210842 Gm9712 processed_pseudogene Interval_93649 chr2 75608100 75608314 + 0 NA Intergenic Intergenic 25175 ENSMUSG00000082152.1 ENSMUSG00000082152 ENSMUST00000119695 Gm13655 processed_pseudogene Interval_172591 chrX 37159719 37159938 + 0 NA intron (ENSMUSG00000036551.6, intron 3 of 5) protein_coding-intron (ENSMUSG00000036551.6, intron 3 of 5) 9014 ENSMUSG00000036551.6 ENSMUSG00000036551 ENSMUST00000046557 Akap14 protein_coding Interval_118499 chr4 132128295 132129587 + 0 NA intron (ENSMUSG00000050511.1, intron 1 of 2) protein_coding-intron (ENSMUSG00000050511.1, intron 1 of 2) 15545 ENSMUSG00000050511.1 ENSMUSG00000050511 ENSMUST00000056336 Oprd1 protein_coding Interval_154585 chr8 21174392 21174741 + 0 NA Intergenic Intergenic 2306 ENSMUSG00000095431.1 ENSMUSG00000095431 ENSMUST00000101893 Gm26240 snRNA Interval_20326 chr10 116900285 116900570 + 0 NA Intergenic Intergenic -3508 ENSMUSG00000034057.8 ENSMUSG00000034057 ENSMUST00000048229 Myrfl protein_coding Interval_155692 chr8 36183956 36184599 + 0 NA Intergenic Intergenic -4095 ENSMUSG00000110176.1 ENSMUSG00000110176 ENSMUST00000209235 Gm35520 lincRNA Interval_42100 chr13 8780063 8781229 + 0 NA Intergenic Intergenic 17756 ENSMUSG00000113391.1 ENSMUSG00000113391 ENSMUST00000221553 Gm48327 TEC Interval_102202 chr3 19426232 19426427 + 0 NA Intergenic Intergenic 95556 ENSMUSG00000089149.1 ENSMUSG00000089149 ENSMUST00000158524 Gm22282 misc_RNA Interval_44296 chr13 43439287 43439614 + 0 NA intron (ENSMUSG00000038546.9, intron 2 of 13) protein_coding-intron (ENSMUSG00000038546.9, intron 2 of 13) -13600 ENSMUSG00000065315.1 ENSMUSG00000065315 ENSMUST00000083381 Gm26064 snRNA Interval_167434 chr9 69301633 69302398 + 0 NA intron (ENSMUSG00000032238.17, intron 1 of 9) protein_coding-intron (ENSMUSG00000032238.17, intron 2 of 10) 62232 ENSMUSG00000086648.1 ENSMUSG00000086648 ENSMUST00000152570 Gm15511 antisense Interval_140168 chr6 114961501 114961721 + 0 NA intron (ENSMUSG00000030315.15, intron 1 of 4) protein_coding-intron (ENSMUSG00000030315.15, intron 1 of 4) -39795 ENSMUSG00000030315.15 ENSMUSG00000030315 ENSMUST00000204693 Vgll4 protein_coding Interval_4637 chr1 75588523 75589534 + 0 NA Intergenic Intergenic 20945 ENSMUSG00000083244.1 ENSMUSG00000083244 ENSMUST00000117745 Gm15180 processed_pseudogene Interval_97744 chr2 143702708 143702998 + 0 NA intron (ENSMUSG00000027419.9, intron 5 of 11) protein_coding-intron (ENSMUSG00000027419.9, intron 5 of 11) 93112 ENSMUSG00000087115.7 ENSMUSG00000087115 ENSMUST00000156362 Pcsk2os2 antisense Interval_145185 chr7 30515073 30515845 + 0 NA promoter-TSS (ENSMUSG00000062132.10) protein_coding-promoter-TSS (ENSMUSG00000062132.10) -240 ENSMUSG00000062132.10 ENSMUSG00000062132 ENSMUST00000238768 Arhgap33os protein_coding Interval_429 chr1 5169631 5171054 + 0 NA Intergenic Intergenic 87210 ENSMUSG00000033793.12 ENSMUSG00000033793 ENSMUST00000192142 Atp6v1h protein_coding Interval_169815 chr9 102100868 102101357 + 0 NA intron (ENSMUSG00000032537.15, intron 3 of 4) protein_coding-intron (ENSMUSG00000032537.15, intron 3 of 15) -26776 ENSMUSG00000065107.1 ENSMUSG00000065107 ENSMUST00000083173 n-R5s88 rRNA Interval_42657 chr13 17746089 17746796 + 0 NA intron (ENSMUSG00000041297.8, intron 7 of 13) protein_coding-intron (ENSMUSG00000041297.8, intron 7 of 13) -1031 ENSMUSG00000080574.1 ENSMUSG00000080574 ENSMUST00000116924 Mir466i miRNA Interval_37964 chr12 73400484 73401021 + 0 NA intron (ENSMUSG00000056359.6, intron 1 of 3) lincRNA-intron (ENSMUSG00000056359.6, intron 1 of 3) 8805 ENSMUSG00000056359.6 ENSMUSG00000056359 ENSMUST00000221180 D830013O20Rik lincRNA Interval_144351 chr7 24630219 24630588 + 0 NA TTS (ENSMUSG00000097215.1) antisense-TTS (ENSMUSG00000097215.1) -6147 ENSMUSG00000057454.5 ENSMUSG00000057454 ENSMUST00000080718 Lypd3 protein_coding Interval_150319 chr7 109571515 109571812 + 0 NA intron (ENSMUSG00000031024.13, intron 2 of 2) protein_coding-intron (ENSMUSG00000031024.13, intron 1 of 19) 45090 ENSMUSG00000031024.13 ENSMUSG00000031024 ENSMUST00000208734 Denn2b protein_coding Interval_132875 chr5 148450743 148452070 + 0 NA Intergenic Intergenic -5432 ENSMUSG00000106956.1 ENSMUSG00000106956 ENSMUST00000202977 Gm19617 unprocessed_pseudogene Interval_74564 chr17 53465486 53465999 + 0 NA TTS (ENSMUSG00000117111.1) processed_pseudogene-TTS (ENSMUSG00000117111.1) 1573 ENSMUSG00000117111.1 ENSMUSG00000117111 ENSMUST00000232903 Tpt1-ps7 processed_pseudogene Interval_100033 chr2 166655562 166657143 + 0 NA intron (ENSMUSG00000039621.13, intron 1 of 2) protein_coding-intron (ENSMUSG00000039621.13, intron 1 of 39) -1210 ENSMUSG00000093063.1 ENSMUSG00000093063 ENSMUST00000175322 Gm23152 rRNA Interval_164931 chr9 43191390 43192212 + 0 NA intron (ENSMUSG00000032015.16, intron 2 of 12) protein_coding-intron (ENSMUSG00000032015.16, intron 2 of 12) -25321 ENSMUSG00000111864.1 ENSMUSG00000111864 ENSMUST00000216693 Rpl26-ps6 processed_pseudogene Interval_59074 chr15 43195620 43196150 + 0 NA Intergenic Intergenic 22276 ENSMUSG00000098002.1 ENSMUSG00000098002 ENSMUST00000182757 Gm9658 processed_pseudogene Interval_124547 chr5 50293887 50294199 + 0 NA intron (ENSMUSG00000105020.1, intron 2 of 4) unprocessed_pseudogene-intron (ENSMUSG00000105020.1, intron 2 of 4) -3557 ENSMUSG00000095857.1 ENSMUSG00000095857 ENSMUST00000179376 Gm22618 snRNA Interval_101843 chr3 9945350 9945556 + 0 NA Intergenic Intergenic 26548 ENSMUSG00000103698.1 ENSMUSG00000103698 ENSMUST00000192578 Gm17877 processed_pseudogene Interval_33383 chr11 116237788 116238992 + 0 NA promoter-TSS (ENSMUSG00000034282.3) protein_coding-promoter-TSS (ENSMUSG00000034282.3) -313 ENSMUSG00000034282.3 ENSMUSG00000034282 ENSMUST00000037007 Evpl protein_coding Interval_174180 chrX 137569666 137571644 + 0 NA promoter-TSS (ENSMUSG00000059203.10) protein_coding-promoter-TSS (ENSMUSG00000059203.10) -364 ENSMUSG00000059203.10 ENSMUSG00000059203 ENSMUST00000075471 Il1rapl2 protein_coding Interval_148957 chr7 90387008 90387268 + 0 NA promoter-TSS (ENSMUSG00000030616.16) protein_coding-promoter-TSS (ENSMUSG00000030616.16) 38439 ENSMUSG00000030616.16 ENSMUSG00000030616 ENSMUST00000189194 Sytl2 protein_coding Interval_153101 chr7 141361486 141362090 + 0 NA TTS (ENSMUSG00000025504.14) protein_coding-TTS (ENSMUSG00000025504.14) 3294 ENSMUSG00000086844.1 ENSMUSG00000086844 ENSMUST00000129373 B230206H07Rik processed_transcript Interval_110764 chr4 8133214 8133765 + 0 NA Intergenic Intergenic 14869 ENSMUSG00000083068.1 ENSMUSG00000083068 ENSMUST00000120050 Gm11800 processed_pseudogene Interval_42907 chr13 21265679 21266013 + 0 NA Intergenic Intergenic 26885 ENSMUSG00000004344.12 ENSMUSG00000004344 ENSMUST00000110491 Gpx5 protein_coding Interval_8834 chr1 151450863 151451114 + 0 NA TTS (ENSMUSG00000053286.11) protein_coding-TTS (ENSMUSG00000053286.11) 5683 ENSMUSG00000103928.1 ENSMUSG00000103928 ENSMUST00000192826 Gm37893 TEC Interval_106920 chr3 101907176 101908053 + 0 NA intron (ENSMUSG00000033147.16, intron 2 of 8) protein_coding-intron (ENSMUSG00000033147.16, intron 2 of 11) 16835 ENSMUSG00000033147.16 ENSMUSG00000033147 ENSMUST00000182040 Slc22a15 protein_coding Interval_139156 chr6 96420653 96420949 + 0 NA intron (ENSMUSG00000059187.12, intron 2 of 4) protein_coding-intron (ENSMUSG00000059187.12, intron 1 of 3) 48730 ENSMUSG00000065239.1 ENSMUSG00000065239 ENSMUST00000083305 Gm22971 snRNA Interval_139498 chr6 100562583 100564455 + 0 NA Intergenic Intergenic 36119 ENSMUSG00000101553.1 ENSMUSG00000101553 ENSMUST00000187986 1700049E22Rik lincRNA Interval_135025 chr6 34755650 34756030 + 0 NA TTS (ENSMUSG00000029761.16) protein_coding-TTS (ENSMUSG00000029761.16) -7020 ENSMUSG00000029761.16 ENSMUSG00000029761 ENSMUST00000132331 Cald1 protein_coding Interval_142469 chr6 142654603 142654906 + 0 NA intron (ENSMUSG00000030249.15, intron 16 of 38) protein_coding-intron (ENSMUSG00000030249.15, intron 16 of 39) 40159 ENSMUSG00000104234.1 ENSMUSG00000104234 ENSMUST00000194811 5330439B14Rik antisense Interval_128521 chr5 113806522 113806801 + 0 NA Intergenic Intergenic -6215 ENSMUSG00000054675.5 ENSMUSG00000054675 ENSMUST00000160374 Tmem119 protein_coding Interval_161498 chr8 120741595 120741944 + 0 NA exon (ENSMUSG00000041515.10, exon 2 of 2) protein_coding-exon (ENSMUSG00000041515.10, exon 2 of 2) 5410 ENSMUSG00000041515.10 ENSMUSG00000041515 ENSMUST00000160594 Irf8 protein_coding Interval_150484 chr7 111082016 111083638 + 0 NA promoter-TSS (ENSMUSG00000005610.17) protein_coding-promoter-TSS (ENSMUSG00000005610.17) -6600 ENSMUSG00000088948.1 ENSMUSG00000088948 ENSMUST00000158323 Gm23262 snoRNA Interval_96628 chr2 126626615 126627019 + 0 NA TTS (ENSMUSG00000027361.15) protein_coding-TTS (ENSMUSG00000027361.15) -7518 ENSMUSG00000027360.5 ENSMUSG00000027360 ENSMUST00000148591 Hdc protein_coding Interval_2229 chr1 37234468 37236288 + 0 NA intron (ENSMUSG00000026114.14, intron 2 of 5) protein_coding-intron (ENSMUSG00000026114.14, intron 2 of 5) 16999 ENSMUSG00000026114.14 ENSMUSG00000026114 ENSMUST00000027288 Cnga3 protein_coding Interval_59848 chr15 59764497 59765132 + 0 NA Intergenic Intergenic 30145 ENSMUSG00000115426.1 ENSMUSG00000115426 ENSMUST00000228865 Gm19510 lincRNA Interval_124717 chr5 53538812 53539080 + 0 NA intron (ENSMUSG00000039191.12, intron 1 of 6) protein_coding-intron (ENSMUSG00000039191.12, intron 1 of 6) 8376 ENSMUSG00000107111.1 ENSMUSG00000107111 ENSMUST00000202154 Gm40304 antisense Interval_86526 chr19 41410896 41411083 + 0 NA Intergenic Intergenic -25887 ENSMUSG00000025017.10 ENSMUSG00000025017 ENSMUST00000235978 Pik3ap1 protein_coding Interval_32516 chr11 108050897 108051141 + 0 NA intron (ENSMUSG00000050965.14, intron 5 of 16) protein_coding-intron (ENSMUSG00000050965.14, intron 5 of 16) -38214 ENSMUSG00000050965.14 ENSMUSG00000050965 ENSMUST00000134725 Prkca protein_coding Interval_69683 chr16 95488764 95489028 + 0 NA intron (ENSMUSG00000040732.20, intron 2 of 10) protein_coding-intron (ENSMUSG00000040732.20, intron 2 of 9) 41469 ENSMUSG00000040732.20 ENSMUSG00000040732 ENSMUST00000121809 Erg protein_coding Interval_109118 chr3 135916285 135916465 + 0 NA intron (ENSMUSG00000104710.1, intron 2 of 3) antisense-intron (ENSMUSG00000104710.1, intron 2 of 3) -11857 ENSMUSG00000104710.1 ENSMUSG00000104710 ENSMUST00000198354 Gm31243 antisense Interval_126119 chr5 77642806 77643265 + 0 NA Intergenic Intergenic 26811 ENSMUSG00000089415.1 ENSMUSG00000089415 ENSMUST00000158790 Gm22011 snoRNA Interval_51525 chr14 29787969 29788272 + 0 NA intron (ENSMUSG00000114774.1, intron 1 of 3) lincRNA-intron (ENSMUSG00000114774.1, intron 1 of 3) 50192 ENSMUSG00000114815.1 ENSMUSG00000114815 ENSMUST00000225158 Gm41118 lincRNA Interval_140653 chr6 120317952 120318717 + 0 NA Intergenic Intergenic -23775 ENSMUSG00000041372.10 ENSMUSG00000041372 ENSMUST00000212457 B4galnt3 protein_coding Interval_166575 chr9 61019915 61021283 + 0 NA TTS (ENSMUSG00000111290.1) lincRNA-TTS (ENSMUSG00000111290.1) 3530 ENSMUSG00000111290.1 ENSMUSG00000111290 ENSMUST00000216854 Gm5122 lincRNA Interval_136379 chr6 53973928 53974212 + 0 NA intron (ENSMUSG00000052955.5, intron 2 of 12) protein_coding-intron (ENSMUSG00000052955.5, intron 2 of 12) 4592 ENSMUSG00000052955.5 ENSMUSG00000052955 ENSMUST00000166545 Cpvl protein_coding Interval_16065 chr10 60447810 60447999 + 0 NA intron (ENSMUSG00000012819.15, intron 12 of 65) protein_coding-intron (ENSMUSG00000012819.15, intron 12 of 66) 48000 ENSMUSG00000090439.3 ENSMUSG00000090439 ENSMUST00000218360 Gm17455 protein_coding Interval_83459 chr18 85880115 85880396 + 0 NA Intergenic Intergenic -31526 ENSMUSG00000118241.1 ENSMUSG00000118241 ENSMUST00000237360 Gm5824 processed_pseudogene Interval_169757 chr9 100999067 100999522 + 0 NA intron (ENSMUSG00000032527.13, intron 5 of 13) protein_coding-intron (ENSMUSG00000032527.13, intron 6 of 14) 35587 ENSMUSG00000032527.13 ENSMUSG00000032527 ENSMUST00000189498 Pccb protein_coding Interval_27552 chr11 68639771 68640332 + 0 NA Intergenic Intergenic -52103 ENSMUSG00000020900.15 ENSMUSG00000020900 ENSMUST00000139059 Myh10 protein_coding Interval_37718 chr12 71371996 71372333 + 0 NA intron (ENSMUSG00000113441.1, intron 2 of 5) lincRNA-intron (ENSMUSG00000113441.1, intron 2 of 5) 12044 ENSMUSG00000100668.1 ENSMUSG00000100668 ENSMUST00000190526 1700083H02Rik lincRNA Interval_65840 chr16 29722355 29723874 + 0 NA Intergenic Intergenic 31198 ENSMUSG00000116814.1 ENSMUSG00000116814 ENSMUST00000232037 Gm49636 lincRNA Interval_9882 chr1 163779325 163780105 + 0 NA exon (ENSMUSG00000026585.13, exon 1 of 20) protein_coding-exon (ENSMUSG00000026585.13, exon 1 of 20) 132 ENSMUSG00000026585.13 ENSMUSG00000026585 ENSMUST00000027877 Kifap3 protein_coding Interval_29396 chr11 83709629 83710017 + 0 NA intron (ENSMUSG00000000983.13, intron 1 of 1) protein_coding-intron (ENSMUSG00000000983.13, intron 1 of 2) 698 ENSMUSG00000000983.13 ENSMUSG00000000983 ENSMUST00000139762 Wfdc18 protein_coding Interval_143094 chr6 149308071 149310065 + 0 NA promoter-TSS (ENSMUSG00000032712.16) protein_coding-promoter-TSS (ENSMUSG00000032712.16) -2348 ENSMUSG00000032712.16 ENSMUSG00000032712 ENSMUST00000189837 Resf1 protein_coding Interval_150758 chr7 114143255 114143657 + 0 NA Intergenic Intergenic -25692 ENSMUSG00000055723.6 ENSMUSG00000055723 ENSMUST00000210075 Rras2 protein_coding Interval_46585 chr13 67382285 67382544 + 0 NA Intergenic Intergenic -6681 ENSMUSG00000098692.1 ENSMUSG00000098692 ENSMUST00000166080 Gm28041 protein_coding Interval_78147 chr18 9328144 9328435 + 0 NA intron (ENSMUSG00000024286.8, intron 6 of 7) protein_coding-intron (ENSMUSG00000024286.8, intron 8 of 9) 23654 ENSMUSG00000117644.1 ENSMUSG00000117644 ENSMUST00000234891 Gm50053 processed_pseudogene Interval_41424 chr12 113701568 113702391 + 0 NA TTS (ENSMUSG00000095429.1) IG_V_gene-TTS (ENSMUSG00000095429.1) 599 ENSMUSG00000095429.1 ENSMUSG00000095429 ENSMUST00000103450 Ighv5-12 IG_V_gene Interval_78617 chr18 15335384 15335718 + 0 NA Intergenic Intergenic -16383 ENSMUSG00000117645.1 ENSMUSG00000117645 ENSMUST00000234122 A830021F12Rik lincRNA Interval_34044 chr11 120163368 120164855 + 0 NA Intergenic Intergenic -12799 ENSMUSG00000061306.16 ENSMUSG00000061306 ENSMUST00000152859 Slc38a10 protein_coding Interval_148349 chr7 80665267 80665735 + 0 NA intron (ENSMUSG00000030527.15, intron 2 of 14) protein_coding-intron (ENSMUSG00000030527.15, intron 2 of 14) 29484 ENSMUSG00000084821.1 ENSMUSG00000084821 ENSMUST00000142678 Gm15880 antisense Interval_126760 chr5 92682611 92684165 + 0 NA promoter-TSS (ENSMUSG00000029381.16) protein_coding-promoter-TSS (ENSMUSG00000029381.16) -39504 ENSMUSG00000050050.17 ENSMUSG00000050050 ENSMUST00000150359 Ccdc158 protein_coding Interval_45139 chr13 52610849 52611077 + 0 NA exon (ENSMUSG00000021457.14, exon 2 of 14) protein_coding-exon (ENSMUSG00000021457.14, exon 2 of 14) 27460 ENSMUSG00000021457.14 ENSMUSG00000021457 ENSMUST00000140339 Syk protein_coding Interval_14309 chr10 30730972 30731796 + 0 NA intron (ENSMUSG00000039697.16, intron 1 of 13) protein_coding-intron (ENSMUSG00000039697.16, intron 2 of 15) 12578 ENSMUSG00000110894.1 ENSMUSG00000110894 ENSMUST00000215097 Gm48335 TEC Interval_86247 chr19 38056458 38057274 + 0 NA intron (ENSMUSG00000024989.15, intron 1 of 9) protein_coding-intron (ENSMUSG00000024989.15, intron 1 of 8) 1777 ENSMUSG00000024989.15 ENSMUSG00000024989 ENSMUST00000237408 Cep55 protein_coding Interval_91798 chr2 49701783 49702033 + 0 NA intron (ENSMUSG00000026764.15, intron 2 of 6) protein_coding-intron (ENSMUSG00000026764.15, intron 10 of 25) 21409 ENSMUSG00000082879.1 ENSMUSG00000082879 ENSMUST00000120607 Gm13525 processed_pseudogene Interval_65659 chr16 24932045 24932611 + 0 NA intron (ENSMUSG00000033306.15, intron 5 of 7) protein_coding-intron (ENSMUSG00000033306.15, intron 10 of 12) 48155 ENSMUSG00000077602.1 ENSMUSG00000077602 ENSMUST00000104414 Gm22672 snoRNA Interval_173818 chrX 105020530 105020854 + 0 NA promoter-TSS (ENSMUSG00000088960.1) snRNA-promoter-TSS (ENSMUSG00000088960.1) -314 ENSMUSG00000088960.1 ENSMUSG00000088960 ENSMUST00000158335 Gm22090 snRNA Interval_170138 chr9 105455912 105456242 + 0 NA intron (ENSMUSG00000032570.17, intron 2 of 23) protein_coding-intron (ENSMUSG00000032570.17, intron 8 of 27) -14443 ENSMUSG00000099373.1 ENSMUSG00000099373 ENSMUST00000188984 Gm19667 antisense Interval_53529 chr14 58499915 58500780 + 0 NA Intergenic Intergenic 150053 ENSMUSG00000077201.1 ENSMUSG00000077201 ENSMUST00000104013 Gm25614 snoRNA Interval_87960 chr19 57391363 57391576 + 0 NA Intergenic Intergenic 30439 ENSMUSG00000033478.5 ENSMUSG00000033478 ENSMUST00000237170 Fam160b1 protein_coding Interval_132421 chr5 144835817 144836487 + 0 NA intron (ENSMUSG00000045482.16, intron 56 of 70) protein_coding-intron (ENSMUSG00000045482.16, intron 55 of 69) 60664 ENSMUSG00000098822.1 ENSMUSG00000098822 ENSMUST00000183852 Mir7039 miRNA Interval_165661 chr9 50751158 50753385 + 0 NA promoter-TSS (ENSMUSG00000032060.10) protein_coding-promoter-TSS (ENSMUSG00000032060.10) 83 ENSMUSG00000038086.4 ENSMUSG00000038086 ENSMUST00000217159 Hspb2 protein_coding Interval_29596 chr11 85247921 85248750 + 0 NA Intergenic Intergenic -13205 ENSMUSG00000018481.9 ENSMUSG00000018481 ENSMUST00000018625 Appbp2 protein_coding Interval_158147 chr8 79209254 79210678 + 0 NA TTS (ENSMUSG00000031682.5) protein_coding-TTS (ENSMUSG00000031682.5) -15964 ENSMUSG00000110388.1 ENSMUSG00000110388 ENSMUST00000211572 Gm30329 antisense Interval_37070 chr12 57379112 57379380 + 0 NA intron (ENSMUSG00000047022.18, intron 9 of 12) protein_coding-intron (ENSMUSG00000047022.18, intron 8 of 10) 70874 ENSMUSG00000086372.1 ENSMUSG00000086372 ENSMUST00000145464 Gm16246 antisense Interval_174606 chrX 159962894 159963460 + 0 NA intron (ENSMUSG00000040990.17, intron 3 of 5) protein_coding-intron (ENSMUSG00000040990.17, intron 17 of 19) -25256 ENSMUSG00000031303.8 ENSMUSG00000031303 ENSMUST00000033665 Map3k15 protein_coding Interval_2367 chr1 38601228 38601951 + 0 NA intron (ENSMUSG00000037138.18, intron 1 of 22) protein_coding-intron (ENSMUSG00000037138.18, intron 2 of 7) 25612 ENSMUSG00000037138.18 ENSMUSG00000037138 ENSMUST00000134963 Aff3 protein_coding Interval_28894 chr11 79112055 79113227 + 0 NA intron (ENSMUSG00000018334.18, intron 1 of 12) protein_coding-intron (ENSMUSG00000018334.18, intron 1 of 18) -52805 ENSMUSG00000018334.18 ENSMUSG00000018334 ENSMUST00000129463 Ksr1 protein_coding Interval_122173 chr5 18754857 18756059 + 0 NA Intergenic Intergenic -58746 ENSMUSG00000105930.1 ENSMUSG00000105930 ENSMUST00000198410 Gm17889 processed_pseudogene Interval_16930 chr10 69981490 69982194 + 0 NA promoter-TSS (ENSMUSG00000069601.14) protein_coding-promoter-TSS (ENSMUSG00000069601.14) -193169 ENSMUSG00000048701.13 ENSMUSG00000048701 ENSMUST00000135607 Ccdc6 protein_coding Interval_167123 chr9 65508660 65508933 + 0 NA intron (ENSMUSG00000066510.5, intron 6 of 14) protein_coding-intron (ENSMUSG00000066510.5, intron 5 of 13) 11397 ENSMUSG00000066510.5 ENSMUSG00000066510 ENSMUST00000217646 Ankdd1a protein_coding Interval_77071 chr17 86213624 86213895 + 0 NA intron (ENSMUSG00000045038.14, intron 1 of 14) protein_coding-intron (ENSMUSG00000045038.14, intron 2 of 15) 38184 ENSMUSG00000117546.1 ENSMUSG00000117546 ENSMUST00000234087 AC154542.1 TEC Interval_85732 chr19 30166866 30167566 + 0 NA intron (ENSMUSG00000024827.10, intron 2 of 18) protein_coding-intron (ENSMUSG00000024827.10, intron 2 of 24) 6596 ENSMUSG00000058607.4 ENSMUSG00000058607 ENSMUST00000080982 Rpl31-ps20 processed_pseudogene Interval_147238 chr7 64950268 64950933 + 0 NA intron (ENSMUSG00000030518.17, intron 2 of 9) protein_coding-intron (ENSMUSG00000030518.17, intron 2 of 9) 5976 ENSMUSG00000093212.1 ENSMUSG00000093212 ENSMUST00000175471 Gm25249 miRNA Interval_82832 chr18 77277113 77277657 + 0 NA Intergenic Intergenic -4573 ENSMUSG00000032818.16 ENSMUSG00000032818 ENSMUST00000123166 Loxhd1 protein_coding Interval_170926 chr9 112259572 112259855 + 0 NA intron (ENSMUSG00000087038.9, intron 1 of 3) lincRNA-intron (ENSMUSG00000087038.9, intron 1 of 3) 3139 ENSMUSG00000087038.9 ENSMUSG00000087038 ENSMUST00000163302 2900079G21Rik lincRNA Interval_163015 chr9 14542861 14545205 + 0 NA exon (ENSMUSG00000013076.17, exon 13 of 13) protein_coding-exon (ENSMUSG00000013076.17, exon 13 of 13) -18272 ENSMUSG00000111612.1 ENSMUSG00000111612 ENSMUST00000213361 Gm47090 processed_pseudogene Interval_89471 chr2 20860192 20862017 + 0 NA promoter-TSS (ENSMUSG00000036591.16) protein_coding-promoter-TSS (ENSMUSG00000036591.16) -1308 ENSMUSG00000036591.16 ENSMUSG00000036591 ENSMUST00000173654 Arhgap21 protein_coding Interval_85680 chr19 29642186 29642826 + 0 NA intron (ENSMUSG00000046324.12, intron 1 of 12) protein_coding-intron (ENSMUSG00000046324.12, intron 2 of 13) 3521 ENSMUSG00000046324.12 ENSMUSG00000046324 ENSMUST00000160907 Ermp1 protein_coding Interval_42617 chr13 16829689 16831154 + 0 NA Intergenic Intergenic 29051 ENSMUSG00000087872.1 ENSMUSG00000087872 ENSMUST00000157247 Gm26098 misc_RNA Interval_122757 chr5 25162810 25163419 + 0 NA Intergenic Intergenic 5350 ENSMUSG00000077832.1 ENSMUSG00000077832 ENSMUST00000104642 Gm26051 miRNA Interval_41282 chr12 112408651 112409665 + 0 NA Intergenic Intergenic -3364 ENSMUSG00000113120.1 ENSMUSG00000113120 ENSMUST00000221094 E330035G20Rik lincRNA Interval_62302 chr15 89573821 89574264 + 0 NA TTS (ENSMUSG00000022622.5) protein_coding-TTS (ENSMUSG00000022622.5) 5679 ENSMUSG00000022622.5 ENSMUSG00000022622 ENSMUST00000230978 Acr protein_coding Interval_125078 chr5 64297194 64299091 + 0 NA promoter-TSS (ENSMUSG00000029174.18) protein_coding-promoter-TSS (ENSMUSG00000029174.18) -22114 ENSMUSG00000083100.1 ENSMUSG00000083100 ENSMUST00000121819 Gm6044 processed_pseudogene Interval_162746 chr9 8320249 8320724 + 0 NA Intergenic Intergenic 73700 ENSMUSG00000084747.1 ENSMUSG00000084747 ENSMUST00000122798 Mir1899 miRNA Interval_110485 chr3 159445781 159447222 + 0 NA Intergenic Intergenic -44917 ENSMUSG00000104864.1 ENSMUSG00000104864 ENSMUST00000197367 Gm43655 processed_pseudogene Interval_111489 chr4 22109382 22109719 + 0 NA Intergenic Intergenic 7982 ENSMUSG00000082490.1 ENSMUSG00000082490 ENSMUST00000117612 Gm11880 processed_pseudogene Interval_161602 chr8 121513085 121514083 + 0 NA intron (ENSMUSG00000092329.1, intron 1 of 15) protein_coding-intron (ENSMUSG00000092329.1, intron 1 of 15) 28285 ENSMUSG00000031809.10 ENSMUSG00000031809 ENSMUST00000182460 1700018B08Rik protein_coding Interval_2165 chr1 36803687 36805085 + 0 NA intron (ENSMUSG00000026116.11, intron 33 of 41) protein_coding-intron (ENSMUSG00000026116.11, intron 32 of 40) 25402 ENSMUSG00000026117.10 ENSMUSG00000026117 ENSMUST00000190128 Zap70 protein_coding Interval_61559 chr15 82330293 82330536 + 0 NA TTS (ENSMUSG00000022453.8) protein_coding-TTS (ENSMUSG00000022453.8) 2271 ENSMUSG00000022453.8 ENSMUSG00000022453 ENSMUST00000230269 Naga protein_coding Interval_32202 chr11 106105835 106106198 + 0 NA intron (ENSMUSG00000020700.11, intron 2 of 15) protein_coding-intron (ENSMUSG00000020700.11, intron 2 of 15) 21335 ENSMUSG00000085229.1 ENSMUSG00000085229 ENSMUST00000140380 Gm11672 antisense Interval_90975 chr2 33875403 33875605 + 0 NA intron (ENSMUSG00000038740.9, intron 1 of 2) protein_coding-intron (ENSMUSG00000038740.9, intron 1 of 9) 62547 ENSMUSG00000089596.1 ENSMUSG00000089596 ENSMUST00000158971 Nron misc_RNA Interval_11028 chr1 178527290 178531047 + 0 NA promoter-TSS (ENSMUSG00000026494.12) protein_coding-promoter-TSS (ENSMUSG00000026494.12) 43 ENSMUSG00000026494.12 ENSMUSG00000026494 ENSMUST00000160789 Kif26b protein_coding Interval_39038 chr12 84602327 84603229 + 0 NA TTS (ENSMUSG00000021240.6) protein_coding-TTS (ENSMUSG00000021240.6) 14635 ENSMUSG00000021240.6 ENSMUSG00000021240 ENSMUST00000221070 Abcd4 protein_coding Interval_105013 chr3 79798250 79798529 + 0 NA Intergenic Intergenic -36544 ENSMUSG00000077461.1 ENSMUSG00000077461 ENSMUST00000104273 Gm26420 snRNA Interval_26464 chr11 58001410 58001607 + 0 NA Intergenic Intergenic -7556 ENSMUSG00000037331.15 ENSMUSG00000037331 ENSMUST00000140500 Larp1 protein_coding Interval_97996 chr2 146518261 146518557 + 0 NA Intergenic Intergenic -6065 ENSMUSG00000037110.20 ENSMUSG00000037110 ENSMUST00000124709 Ralgapa2 protein_coding Interval_53112 chr14 54525376 54525704 + 0 NA Intergenic Intergenic -8147 ENSMUSG00000023110.12 ENSMUSG00000023110 ENSMUST00000132801 Prmt5 protein_coding Interval_90524 chr2 30942405 30943275 + 0 NA Intergenic Intergenic -12413 ENSMUSG00000026848.14 ENSMUSG00000026848 ENSMUST00000195010 Tor1b protein_coding Interval_108444 chr3 127257214 127258666 + 0 NA intron (ENSMUSG00000032826.19, intron 2 of 15) protein_coding-intron (ENSMUSG00000032826.19, intron 2 of 14) -14165 ENSMUSG00000105733.1 ENSMUSG00000105733 ENSMUST00000197913 Gm42973 TEC Interval_60589 chr15 75515891 75516137 + 0 NA Intergenic Intergenic -1195 ENSMUSG00000116155.1 ENSMUSG00000116155 ENSMUST00000229260 Gm34646 unprocessed_pseudogene Interval_28786 chr11 78315371 78315627 + 0 NA promoter-TSS (ENSMUSG00000002055.9) protein_coding-promoter-TSS (ENSMUSG00000002055.9) 142 ENSMUSG00000002055.9 ENSMUSG00000002055 ENSMUST00000125477 Spag5 protein_coding Interval_135248 chr6 37815314 37815846 + 0 NA Intergenic Intergenic 9494 ENSMUSG00000080242.5 ENSMUSG00000080242 ENSMUST00000122373 Atp6v0c-ps2 processed_pseudogene Interval_36710 chr12 52367101 52367945 + 0 NA Intergenic Intergenic 80602 ENSMUSG00000112139.1 ENSMUSG00000112139 ENSMUST00000218097 Gm47431 lincRNA Interval_78686 chr18 17318492 17318868 + 0 NA intron (ENSMUSG00000117460.1, intron 1 of 4) transcribed_processed_pseudogene-intron (ENSMUSG00000117460.1, intron 1 of 4) -83227 ENSMUSG00000117460.1 ENSMUSG00000117460 ENSMUST00000234739 4921533I20Rik transcribed_processed_pseudogene Interval_74201 chr17 47427123 47429436 + 0 NA intron (ENSMUSG00000047150.8, intron 3 of 3) protein_coding-intron (ENSMUSG00000047150.8, intron 3 of 3) -6399 ENSMUSG00000118471.1 ENSMUSG00000118471 ENSMUST00000238764 Gm50461 protein_coding Interval_124962 chr5 62298217 62298712 + 0 NA Intergenic Intergenic -130255 ENSMUSG00000105285.1 ENSMUSG00000105285 ENSMUST00000196463 Gm43238 TEC Interval_74318 chr17 48880486 48880834 + 0 NA Intergenic Intergenic -51719 ENSMUSG00000040490.4 ENSMUSG00000040490 ENSMUST00000046254 Lrfn2 protein_coding Interval_63017 chr15 98662219 98663376 + 0 NA promoter-TSS (ENSMUSG00000003360.15) protein_coding-promoter-TSS (ENSMUSG00000003360.15) 97 ENSMUSG00000003360.15 ENSMUSG00000003360 ENSMUST00000228973 Ddx23 protein_coding Interval_119380 chr4 137349806 137351098 + 0 NA intron (ENSMUSG00000006699.17, intron 1 of 5) protein_coding-intron (ENSMUSG00000006699.17, intron 1 of 5) 7268 ENSMUSG00000006699.17 ENSMUSG00000006699 ENSMUST00000030417 Cdc42 protein_coding Interval_131862 chr5 140456508 140457356 + 0 NA exon (ENSMUSG00000106350.2, exon 3 of 20) protein_coding-exon (ENSMUSG00000106350.2, exon 3 of 20) -3041 ENSMUSG00000105056.1 ENSMUSG00000105056 ENSMUST00000196158 Gm42805 processed_pseudogene Interval_102297 chr3 21232129 21232450 + 0 NA Intergenic Intergenic 36801 ENSMUSG00000101897.1 ENSMUSG00000101897 ENSMUST00000190301 Gm29137 lincRNA Interval_50544 chr14 14876749 14877066 + 0 NA intron (ENSMUSG00000042567.20, intron 22 of 35) protein_coding-intron (ENSMUSG00000042567.20, intron 4 of 12) 73492 ENSMUSG00000042567.20 ENSMUSG00000042567 ENSMUST00000136826 Nek10 protein_coding Interval_4044 chr1 66799733 66800198 + 0 NA TTS (ENSMUSG00000026004.15) protein_coding-TTS (ENSMUSG00000026004.15) 832 ENSMUSG00000103756.1 ENSMUSG00000103756 ENSMUST00000194465 Gm37285 TEC Interval_37194 chr12 59430050 59430303 + 0 NA Intergenic Intergenic -74567 ENSMUSG00000111978.1 ENSMUSG00000111978 ENSMUST00000219779 Gm48268 processed_pseudogene Interval_36375 chr12 42629130 42630167 + 0 NA Intergenic Intergenic 347932 ENSMUSG00000093214.1 ENSMUSG00000093214 ENSMUST00000175473 Gm25248 miRNA Interval_41935 chr13 4797725 4798347 + 0 NA intron (ENSMUSG00000053499.4, intron 1 of 2) lincRNA-intron (ENSMUSG00000053499.4, intron 1 of 2) 26385 ENSMUSG00000053499.4 ENSMUSG00000053499 ENSMUST00000065956 Gm5444 lincRNA Interval_1719 chr1 32573808 32574041 + 0 NA intron (ENSMUSG00000026058.11, intron 6 of 8) protein_coding-intron (ENSMUSG00000026058.11, intron 6 of 8) -5503 ENSMUSG00000089489.1 ENSMUSG00000089489 ENSMUST00000158864 Gm24732 snRNA Interval_162290 chr8 126819385 126820119 + 0 NA intron (ENSMUSG00000110697.1, intron 3 of 4) lincRNA-intron (ENSMUSG00000110697.1, intron 6 of 8) -19481 ENSMUSG00000110498.1 ENSMUSG00000110498 ENSMUST00000212914 A630001O12Rik lincRNA Interval_101963 chr3 13560995 13561511 + 0 NA intron (ENSMUSG00000039717.16, intron 1 of 5) protein_coding-intron (ENSMUSG00000039717.16, intron 2 of 2) 88033 ENSMUSG00000039717.16 ENSMUSG00000039717 ENSMUST00000108372 Ralyl protein_coding Interval_45254 chr13 53548582 53548933 + 0 NA Intergenic Intergenic -15500 ENSMUSG00000113834.1 ENSMUSG00000113834 ENSMUST00000223156 Gm34022 lincRNA Interval_57763 chr15 19220572 19220982 + 0 NA Intergenic Intergenic 16531 ENSMUSG00000115588.1 ENSMUSG00000115588 ENSMUST00000226404 Gm18533 processed_pseudogene Interval_164032 chr9 31051111 31052101 + 0 NA intron (ENSMUSG00000047412.16, intron 1 of 5) protein_coding-intron (ENSMUSG00000047412.16, intron 1 of 5) -1633 ENSMUSG00000047412.16 ENSMUSG00000047412 ENSMUST00000213202 Zbtb44 protein_coding Interval_127185 chr5 100912843 100913651 + 0 NA intron (ENSMUSG00000106255.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000106255.1, intron 1 of 2) 460 ENSMUSG00000106255.1 ENSMUSG00000106255 ENSMUST00000199211 Gm36793 lincRNA Interval_33154 chr11 114801806 114803443 + 0 NA intron (ENSMUSG00000034677.9, intron 1 of 2) protein_coding-intron (ENSMUSG00000034677.9, intron 1 of 2) 3700 ENSMUSG00000034677.9 ENSMUSG00000034677 ENSMUST00000106584 Gpr142 protein_coding Interval_162774 chr9 8918851 8919125 + 0 NA intron (ENSMUSG00000031870.16, intron 2 of 7) protein_coding-intron (ENSMUSG00000031870.16, intron 2 of 7) 19155 ENSMUSG00000031870.16 ENSMUSG00000031870 ENSMUST00000098986 Pgr protein_coding Interval_129072 chr5 117242889 117243473 + 0 NA intron (ENSMUSG00000061288.13, intron 14 of 20) protein_coding-intron (ENSMUSG00000061288.13, intron 13 of 19) 44387 ENSMUSG00000032959.12 ENSMUSG00000032959 ENSMUST00000139913 Pebp1 protein_coding Interval_166911 chr9 63881412 63881958 + 0 NA Intergenic Intergenic -16580 ENSMUSG00000110768.1 ENSMUSG00000110768 ENSMUST00000215935 Gm18541 processed_pseudogene Interval_166895 chr9 63756704 63759432 + 0 NA promoter-TSS (ENSMUSG00000032402.12) protein_coding-promoter-TSS (ENSMUSG00000032402.12) 43729 ENSMUSG00000111137.1 ENSMUSG00000111137 ENSMUST00000215986 Gm2553 processed_pseudogene Interval_144945 chr7 29043868 29044887 + 0 NA TTS (ENSMUSG00000030592.18) protein_coding-TTS (ENSMUSG00000030592.18) -1251 ENSMUSG00000105563.1 ENSMUSG00000105563 ENSMUST00000200205 Gm44408 miRNA Interval_49892 chr13 117899800 117900380 + 0 NA intron (ENSMUSG00000021730.8, intron 4 of 7) protein_coding-intron (ENSMUSG00000021730.8, intron 4 of 7) -136524 ENSMUSG00000088155.1 ENSMUSG00000088155 ENSMUST00000157530 Gm26349 snoRNA Interval_58976 chr15 41220629 41221497 + 0 NA Intergenic Intergenic 22095 ENSMUSG00000116178.1 ENSMUSG00000116178 ENSMUST00000229823 Gm49529 processed_pseudogene Interval_154245 chr8 13749181 13749605 + 0 NA Intergenic Intergenic -1915 ENSMUSG00000109617.1 ENSMUSG00000109617 ENSMUST00000210184 Gm7669 processed_pseudogene Interval_171907 chr9 122372600 122372953 + 0 NA intron (ENSMUSG00000032540.16, intron 2 of 3) protein_coding-intron (ENSMUSG00000032540.16, intron 4 of 7) 20987 ENSMUSG00000032540.16 ENSMUSG00000032540 ENSMUST00000154161 Abhd5 protein_coding Interval_161320 chr8 119717336 119718049 + 0 NA intron (ENSMUSG00000034112.9, intron 1 of 5) protein_coding-intron (ENSMUSG00000034112.9, intron 1 of 26) 3238 ENSMUSG00000110445.1 ENSMUSG00000110445 ENSMUST00000212203 Gm45747 TEC Interval_93520 chr2 73761231 73761452 + 0 NA intron (ENSMUSG00000056486.18, intron 1 of 9) protein_coding-intron (ENSMUSG00000056486.18, intron 1 of 12) -47821 ENSMUSG00000081062.1 ENSMUSG00000081062 ENSMUST00000118445 Gm13640 processed_pseudogene Interval_60298 chr15 72619430 72619759 + 0 NA intron (ENSMUSG00000047921.17, intron 20 of 21) protein_coding-intron (ENSMUSG00000047921.17, intron 20 of 21) 31311 ENSMUSG00000116088.1 ENSMUSG00000116088 ENSMUST00000230426 Gm49460 antisense Interval_153954 chr8 11476067 11476285 + 0 NA intron (ENSMUSG00000031504.6, intron 1 of 1) protein_coding-intron (ENSMUSG00000031504.6, intron 1 of 1) -1753 ENSMUSG00000096957.1 ENSMUSG00000096957 ENSMUST00000180408 E230013L22Rik bidirectional_promoter_lncRNA Interval_67639 chr16 55039755 55040042 + 0 NA Intergenic Intergenic 67467 ENSMUSG00000064549.1 ENSMUSG00000064549 ENSMUST00000082615 Gm22977 snRNA Interval_148771 chr7 86715891 86716105 + 0 NA Intergenic Intergenic 27668 ENSMUSG00000060688.4 ENSMUSG00000060688 ENSMUST00000080165 Olfr292 protein_coding Interval_41598 chr12 116679062 116679502 + 0 NA intron (ENSMUSG00000056553.14, intron 2 of 4) protein_coding-intron (ENSMUSG00000056553.14, intron 2 of 22) 82029 ENSMUSG00000101814.1 ENSMUSG00000101814 ENSMUST00000186869 Gm17807 processed_pseudogene Interval_12199 chr1 190796982 190797770 + 0 NA exon (ENSMUSG00000089872.10, exon 4 of 4) protein_coding-exon (ENSMUSG00000089872.10, exon 4 of 4) 102341 ENSMUSG00000089872.10 ENSMUSG00000089872 ENSMUST00000159066 Rps6kc1 protein_coding Interval_66142 chr16 31926181 31927159 + 0 NA TTS (ENSMUSG00000083890.1) processed_pseudogene-TTS (ENSMUSG00000083890.1) 1681 ENSMUSG00000083890.1 ENSMUSG00000083890 ENSMUST00000120250 Gm15703 processed_pseudogene Interval_40819 chr12 108632185 108632458 + 0 NA intron (ENSMUSG00000021262.15, intron 1 of 12) protein_coding-intron (ENSMUSG00000021262.15, intron 1 of 13) -26299 ENSMUSG00000065436.1 ENSMUSG00000065436 ENSMUST00000083502 Mir342 miRNA Interval_52729 chr14 49132441 49133413 + 0 NA Intergenic Intergenic -10225 ENSMUSG00000115737.1 ENSMUSG00000115737 ENSMUST00000227008 Rpl19-ps3 transcribed_processed_pseudogene Interval_48534 chr13 99910180 99910825 + 0 NA Intergenic Intergenic -9411 ENSMUSG00000021647.7 ENSMUSG00000021647 ENSMUST00000224142 Cartpt protein_coding Interval_119995 chr4 141286684 141287423 + 0 NA Intergenic Intergenic 8614 ENSMUSG00000085395.1 ENSMUSG00000085395 ENSMUST00000142429 Gm13056 lincRNA Interval_106415 chr3 96065997 96066427 + 0 NA Intergenic Intergenic -8493 ENSMUSG00000015747.5 ENSMUSG00000015747 ENSMUST00000140518 Vps45 protein_coding Interval_101319 chr2 180417656 180418048 + 0 NA Intergenic Intergenic 19473 ENSMUSG00000065460.1 ENSMUSG00000065460 ENSMUST00000083526 Mir133a-2 miRNA Interval_11254 chr1 180494877 180495369 + 0 NA Intergenic Intergenic -18036 ENSMUSG00000104210.1 ENSMUSG00000104210 ENSMUST00000191641 Gm37984 TEC Interval_95383 chr2 107514823 107516035 + 0 NA Intergenic Intergenic 85110 ENSMUSG00000052005.8 ENSMUSG00000052005 ENSMUST00000090043 Gm9864 pseudogene Interval_173293 chrX 77431535 77431838 + 0 NA Intergenic Intergenic -24900 ENSMUSG00000081622.1 ENSMUSG00000081622 ENSMUST00000119715 Gm5937 processed_pseudogene Interval_160738 chr8 111896541 111896766 + 0 NA intron (ENSMUSG00000031952.5, intron 1 of 1) protein_coding-intron (ENSMUSG00000031952.5, intron 1 of 1) 13794 ENSMUSG00000031952.5 ENSMUSG00000031952 ENSMUST00000034430 Chst5 protein_coding Interval_14741 chr10 39525451 39526220 + 0 NA intron (ENSMUSG00000019843.14, intron 6 of 12) protein_coding-intron (ENSMUSG00000019843.14, intron 7 of 13) 32227 ENSMUSG00000087014.1 ENSMUSG00000087014 ENSMUST00000153722 Gm16364 antisense Interval_107543 chr3 108395965 108396208 + 0 NA exon (ENSMUSG00000068740.13, exon 24 of 34) protein_coding-exon (ENSMUSG00000068740.13, exon 24 of 34) 6503 ENSMUSG00000068740.13 ENSMUSG00000068740 ENSMUST00000147565 Celsr2 protein_coding Interval_161073 chr8 117301874 117302560 + 0 NA intron (ENSMUSG00000034390.16, intron 1 of 10) protein_coding-intron (ENSMUSG00000034390.16, intron 1 of 20) -121199 ENSMUSG00000034390.16 ENSMUSG00000034390 ENSMUST00000212884 Cmip protein_coding Interval_62742 chr15 96576486 96577246 + 0 NA intron (ENSMUSG00000023169.15, intron 15 of 15) protein_coding-intron (ENSMUSG00000023169.15, intron 15 of 15) 65347 ENSMUSG00000023169.15 ENSMUSG00000023169 ENSMUST00000229253 Slc38a1 protein_coding Interval_118193 chr4 129455142 129456117 + 0 NA Intergenic Intergenic -2722 ENSMUSG00000064613.1 ENSMUSG00000064613 ENSMUST00000082679 Gm24621 snRNA Interval_148044 chr7 78798665 78798956 + 0 NA Intergenic Intergenic -15279 ENSMUSG00000030612.6 ENSMUSG00000030612 ENSMUST00000133949 Mrpl46 protein_coding Interval_128644 chr5 114473312 114473512 + 0 NA Intergenic Intergenic 20992 ENSMUSG00000041939.14 ENSMUSG00000041939 ENSMUST00000139420 Mvk protein_coding Interval_1259 chr1 18472192 18473529 + 0 NA Intergenic Intergenic -207780 ENSMUSG00000067773.6 ENSMUSG00000067773 ENSMUST00000097817 Defb41 protein_coding Interval_115413 chr4 98746968 98748515 + 0 NA Intergenic Intergenic 2006 ENSMUSG00000090718.1 ENSMUSG00000090718 ENSMUST00000166016 Gm17376 pseudogene Interval_105405 chr3 86025538 86026152 + 0 NA intron (ENSMUSG00000028082.14, intron 1 of 20) protein_coding-intron (ENSMUSG00000028082.14, intron 1 of 20) -23354 ENSMUSG00000049013.3 ENSMUSG00000049013 ENSMUST00000061343 Prss48 protein_coding Interval_95114 chr2 103992410 103994279 + 0 NA intron (ENSMUSG00000046085.7, intron 4 of 4) protein_coding-intron (ENSMUSG00000046085.7, intron 4 of 4) -34504 ENSMUSG00000027180.12 ENSMUSG00000027180 ENSMUST00000102565 Fbxo3 protein_coding Interval_102359 chr3 22155906 22157146 + 0 NA intron (ENSMUSG00000027630.13, intron 2 of 2) protein_coding-intron (ENSMUSG00000027630.13, intron 2 of 15) -75411 ENSMUSG00000103293.1 ENSMUSG00000103293 ENSMUST00000195073 Gm5842 processed_pseudogene Interval_103135 chr3 35816989 35817266 + 0 NA intron (ENSMUSG00000037400.17, intron 18 of 21) protein_coding-intron (ENSMUSG00000037400.17, intron 18 of 29) -21922 ENSMUSG00000037400.17 ENSMUSG00000037400 ENSMUST00000197764 Atp11b protein_coding Interval_38429 chr12 78992275 78992726 + 0 NA intron (ENSMUSG00000046157.13, intron 1 of 2) protein_coding-intron (ENSMUSG00000046157.13, intron 1 of 2) 14840 ENSMUSG00000046157.13 ENSMUSG00000046157 ENSMUST00000173095 Tmem229b protein_coding Interval_20695 chr10 120270963 120272179 + 0 NA Intergenic Intergenic -9669 ENSMUSG00000112322.1 ENSMUSG00000112322 ENSMUST00000219103 Gm48115 TEC Interval_56670 chr14 121288732 121289231 + 0 NA intron (ENSMUSG00000063410.8, intron 10 of 10) protein_coding-intron (ENSMUSG00000063410.8, intron 10 of 10) 40275 ENSMUSG00000085133.2 ENSMUSG00000085133 ENSMUST00000130256 B930095G15Rik sense_intronic Interval_156722 chr8 57599645 57600733 + 0 NA intron (ENSMUSG00000031608.13, intron 1 of 5) protein_coding-intron (ENSMUSG00000031608.13, intron 1 of 11) 6967 ENSMUSG00000110405.1 ENSMUSG00000110405 ENSMUST00000211449 Gm45534 TEC Interval_25433 chr11 48362885 48363579 + 0 NA Intergenic Intergenic -72919 ENSMUSG00000081952.1 ENSMUSG00000081952 ENSMUST00000120545 Gm12178 processed_pseudogene Interval_6847 chr1 120077876 120078386 + 0 NA Intergenic Intergenic -4057 ENSMUSG00000050777.7 ENSMUSG00000050777 ENSMUST00000056089 Tmem37 protein_coding Interval_132412 chr5 144780121 144780851 + 0 NA intron (ENSMUSG00000045482.16, intron 5 of 70) protein_coding-intron (ENSMUSG00000045482.16, intron 5 of 69) 6061 ENSMUSG00000088685.1 ENSMUSG00000088685 ENSMUST00000158060 Gm23995 snoRNA Interval_115195 chr4 94202386 94203424 + 0 NA intron (ENSMUSG00000085931.1, intron 2 of 5) lincRNA-intron (ENSMUSG00000085931.1, intron 2 of 5) 104615 ENSMUSG00000077622.1 ENSMUSG00000077622 ENSMUST00000104434 Gm23836 snoRNA Interval_6018 chr1 94013799 94014252 + 0 NA exon (ENSMUSG00000073608.4, exon 8 of 8) protein_coding-exon (ENSMUSG00000073608.4, exon 8 of 8) -6426 ENSMUSG00000034000.15 ENSMUSG00000034000 ENSMUST00000050890 Neu4 protein_coding Interval_18976 chr10 93525792 93526152 + 0 NA exon (ENSMUSG00000015890.2, exon 8 of 9) protein_coding-exon (ENSMUSG00000015890.2, exon 8 of 9) 14061 ENSMUSG00000015890.2 ENSMUSG00000015890 ENSMUST00000016034 Amdhd1 protein_coding Interval_21479 chr10 128837457 128837872 + 0 NA intron (ENSMUSG00000078427.3, intron 2 of 11) protein_coding-intron (ENSMUSG00000078427.3, intron 2 of 10) 15732 ENSMUSG00000078427.3 ENSMUSG00000078427 ENSMUST00000220381 Sarnp protein_coding Interval_3487 chr1 58802660 58802960 + 0 NA intron (ENSMUSG00000026029.14, intron 1 of 8) protein_coding-intron (ENSMUSG00000026029.14, intron 1 of 8) 5027 ENSMUSG00000102719.1 ENSMUSG00000102719 ENSMUST00000194726 Gm37760 TEC Interval_80678 chr18 46250063 46250847 + 0 NA intron (ENSMUSG00000024477.4, intron 6 of 8) protein_coding-intron (ENSMUSG00000024477.4, intron 5 of 7) 30372 ENSMUSG00000024477.4 ENSMUSG00000024477 ENSMUST00000236205 Pggt1b protein_coding Interval_52497 chr14 47073519 47074951 + 0 NA intron (ENSMUSG00000021838.17, intron 7 of 12) protein_coding-intron (ENSMUSG00000021838.17, intron 7 of 12) 41836 ENSMUSG00000072589.4 ENSMUSG00000072589 ENSMUST00000228010 Gm10371 antisense Interval_94030 chr2 81130312 81131165 + 0 NA Intergenic Intergenic -146549 ENSMUSG00000065261.1 ENSMUSG00000065261 ENSMUST00000083327 Gm23452 snRNA Interval_80736 chr18 46692419 46693428 + 0 NA Intergenic Intergenic 35432 ENSMUSG00000033022.8 ENSMUSG00000033022 ENSMUST00000234222 Cdo1 protein_coding Interval_105209 chr3 83868389 83868770 + 0 NA Intergenic Intergenic -26812 ENSMUSG00000027995.10 ENSMUSG00000027995 ENSMUST00000029623 Tlr2 protein_coding Interval_174523 chrX 155903091 155903418 + 0 NA intron (ENSMUSG00000055109.5, intron 2 of 6) protein_coding-intron (ENSMUSG00000055109.5, intron 2 of 6) -19663 ENSMUSG00000081386.1 ENSMUSG00000081386 ENSMUST00000120553 Gm15160 processed_pseudogene Interval_9445 chr1 157174043 157174259 + 0 NA exon (ENSMUSG00000070565.11, exon 9 of 18) protein_coding-exon (ENSMUSG00000070565.11, exon 9 of 18) 55203 ENSMUSG00000109913.1 ENSMUSG00000109913 ENSMUST00000209278 Gm30694 unitary_pseudogene Interval_140305 chr6 116286905 116287338 + 0 NA intron (ENSMUSG00000042213.17, intron 1 of 2) protein_coding-intron (ENSMUSG00000042213.17, intron 4 of 9) 22856 ENSMUSG00000042213.17 ENSMUSG00000042213 ENSMUST00000221824 Zfand4 protein_coding Interval_112269 chr4 39508474 39508796 + 0 NA Intergenic Intergenic 58340 ENSMUSG00000028287.4 ENSMUSG00000028287 ENSMUST00000029955 1700009N14Rik protein_coding Interval_43520 chr13 32544974 32545609 + 0 NA Intergenic Intergenic -8876 ENSMUSG00000113449.1 ENSMUSG00000113449 ENSMUST00000221163 Gm48073 lincRNA Interval_174422 chrX 152143872 152145266 + 0 NA exon (ENSMUSG00000041115.16, exon 1 of 14) protein_coding-exon (ENSMUSG00000041115.16, exon 1 of 14) 301 ENSMUSG00000041115.16 ENSMUSG00000041115 ENSMUST00000096275 Iqsec2 protein_coding Interval_54342 chr14 67809266 67809505 + 0 NA intron (ENSMUSG00000044447.5, intron 21 of 51) protein_coding-intron (ENSMUSG00000044447.5, intron 21 of 51) -44426 ENSMUSG00000044447.5 ENSMUSG00000044447 ENSMUST00000224823 Dock5 protein_coding Interval_68729 chr16 85129180 85129514 + 0 NA intron (ENSMUSG00000022892.11, intron 1 of 13) protein_coding-intron (ENSMUSG00000022892.11, intron 1 of 15) -19482 ENSMUSG00000114988.1 ENSMUSG00000114988 ENSMUST00000227036 Gm49226 antisense Interval_43142 chr13 24626659 24626956 + 0 NA intron (ENSMUSG00000036006.20, intron 1 of 12) protein_coding-intron (ENSMUSG00000036006.20, intron 1 of 13) -22040 ENSMUSG00000085603.3 ENSMUSG00000085603 ENSMUST00000127863 Gm11346 transcribed_processed_pseudogene Interval_105753 chr3 89150065 89150322 + 0 NA intron (ENSMUSG00000028051.10, intron 2 of 3) protein_coding-intron (ENSMUSG00000028051.10, intron 5 of 7) 9787 ENSMUSG00000028051.10 ENSMUSG00000028051 ENSMUST00000133368 Hcn3 protein_coding Interval_53815 chr14 62226443 62227160 + 0 NA Intergenic Intergenic -22449 ENSMUSG00000098096.1 ENSMUSG00000098096 ENSMUST00000183203 Gm26969 lincRNA Interval_150309 chr7 109523169 109525280 + 0 NA exon (ENSMUSG00000031024.13, exon 20 of 20) protein_coding-exon (ENSMUSG00000031024.13, exon 20 of 20) 2944 ENSMUSG00000077575.1 ENSMUSG00000077575 ENSMUST00000104387 Gm24888 snoRNA Interval_25717 chr11 51058922 51060265 + 0 NA promoter-TSS (ENSMUSG00000020364.14) protein_coding-promoter-TSS (ENSMUSG00000020364.14) 334 ENSMUSG00000020364.14 ENSMUSG00000020364 ENSMUST00000020628 Zfp354a protein_coding Interval_69175 chr16 91127980 91128826 + 0 NA Intergenic Intergenic 5026 ENSMUSG00000116981.1 ENSMUSG00000116981 ENSMUST00000231448 Gm49611 processed_pseudogene Interval_89575 chr2 22930571 22930874 + 0 NA intron (ENSMUSG00000026784.14, intron 9 of 10) protein_coding-intron (ENSMUSG00000026784.14, intron 9 of 10) -16890 ENSMUSG00000081861.1 ENSMUSG00000081861 ENSMUST00000121960 Gm14441 processed_pseudogene Interval_144289 chr7 24316171 24317232 + 0 NA promoter-TSS (ENSMUSG00000074282.10) protein_coding-promoter-TSS (ENSMUSG00000074282.10) -119 ENSMUSG00000074282.10 ENSMUSG00000074282 ENSMUST00000154309 Zfp94 protein_coding Interval_149557 chr7 99556032 99556372 + 0 NA intron (ENSMUSG00000018909.15, intron 1 of 4) protein_coding-intron (ENSMUSG00000018909.15, intron 1 of 14) 3933 ENSMUSG00000065571.1 ENSMUSG00000065571 ENSMUST00000083637 Mir326 miRNA Interval_166972 chr9 64256544 64256964 + 0 NA Intergenic Intergenic 21553 ENSMUSG00000035337.3 ENSMUSG00000035337 ENSMUST00000039011 Uchl4 protein_coding Interval_126964 chr5 98541408 98541791 + 0 NA TTS (ENSMUSG00000077424.1) snoRNA-TTS (ENSMUSG00000077424.1) 115 ENSMUSG00000077424.1 ENSMUSG00000077424 ENSMUST00000104236 Gm24279 snoRNA Interval_115540 chr4 100478369 100479268 + 0 NA promoter-TSS (ENSMUSG00000069733.11) protein_coding-promoter-TSS (ENSMUSG00000069733.11) -31 ENSMUSG00000069733.11 ENSMUSG00000069733 ENSMUST00000092730 Ube2u protein_coding Interval_38483 chr12 79351237 79351424 + 0 NA intron (ENSMUSG00000059060.15, intron 1 of 2) protein_coding-intron (ENSMUSG00000059060.15, intron 7 of 7) 23977 ENSMUSG00000059060.15 ENSMUSG00000059060 ENSMUST00000221257 Rad51b protein_coding Interval_170442 chr9 108013374 108014197 + 0 NA intron (ENSMUSG00000102540.1, intron 1 of 1) protein_coding-intron (ENSMUSG00000032594.11, intron 1 of 5) 2823 ENSMUSG00000102540.1 ENSMUSG00000102540 ENSMUST00000191858 Gm38134 antisense Interval_163272 chr9 20453414 20454639 + 0 NA intron (ENSMUSG00000063108.15, intron 1 of 3) protein_coding-intron (ENSMUSG00000063108.15, intron 2 of 7) 3145 ENSMUSG00000111626.1 ENSMUSG00000111626 ENSMUST00000215252 Gm48738 processed_pseudogene Interval_124865 chr5 57586580 57587452 + 0 NA intron (ENSMUSG00000097216.3, intron 4 of 4) processed_transcript-intron (ENSMUSG00000097216.3, intron 4 of 4) -21553 ENSMUSG00000051116.6 ENSMUSG00000051116 ENSMUST00000153583 Gm8121 processed_pseudogene Interval_142416 chr6 141797582 141798352 + 0 NA Intergenic Intergenic -24157 ENSMUSG00000084927.1 ENSMUSG00000084927 ENSMUST00000148411 Gm5724 protein_coding Interval_95541 chr2 112037476 112039160 + 0 NA exon (ENSMUSG00000074947.3, exon 4 of 4) protein_coding-exon (ENSMUSG00000074947.3, exon 4 of 4) 11920 ENSMUSG00000074947.3 ENSMUSG00000074947 ENSMUST00000099600 Olfr1312 protein_coding Interval_138762 chr6 91690631 91691621 + 0 NA exon (ENSMUSG00000108784.1, exon 1 of 1) TEC-exon (ENSMUSG00000108784.1, exon 1 of 1) 482 ENSMUSG00000108784.1 ENSMUSG00000108784 ENSMUST00000206152 4930517G19Rik TEC Interval_35632 chr12 26342808 26344110 + 0 NA intron (ENSMUSG00000020642.13, intron 4 of 7) protein_coding-intron (ENSMUSG00000020642.13, intron 3 of 9) -3258 ENSMUSG00000114048.1 ENSMUSG00000114048 ENSMUST00000221235 4930549C15Rik antisense Interval_22388 chr11 9383064 9383884 + 0 NA intron (ENSMUSG00000004668.14, intron 31 of 61) protein_coding-intron (ENSMUSG00000004668.14, intron 31 of 61) 190023 ENSMUSG00000004668.14 ENSMUSG00000004668 ENSMUST00000151522 Abca13 protein_coding Interval_117159 chr4 120132037 120132296 + 0 NA exon (ENSMUSG00000028634.17, exon 8 of 9) protein_coding-exon (ENSMUSG00000028634.17, exon 8 of 9) -29040 ENSMUSG00000028635.7 ENSMUSG00000028635 ENSMUST00000030384 Edn2 protein_coding Interval_87750 chr19 55619616 55619820 + 0 NA intron (ENSMUSG00000024983.10, intron 8 of 8) protein_coding-intron (ENSMUSG00000024983.10, intron 7 of 7) -122546 ENSMUSG00000024985.20 ENSMUSG00000024985 ENSMUST00000148666 Tcf7l2 protein_coding Interval_16734 chr10 67729204 67729744 + 0 NA Intergenic Intergenic -11435 ENSMUSG00000112619.1 ENSMUSG00000112619 ENSMUST00000218164 1700030E10Rik lincRNA Interval_6606 chr1 118248220 118248481 + 0 NA Intergenic Intergenic -1513 ENSMUSG00000099870.1 ENSMUSG00000099870 ENSMUST00000188426 Gm7200 processed_pseudogene Interval_132450 chr5 144998426 144999179 + 0 NA intron (ENSMUSG00000038770.17, intron 2 of 3) protein_coding-intron (ENSMUSG00000038770.17, intron 7 of 12) -21376 ENSMUSG00000105177.1 ENSMUSG00000105177 ENSMUST00000196761 Gm43563 unprocessed_pseudogene Interval_144453 chr7 25237353 25239532 + 0 NA promoter-TSS (ENSMUSG00000057177.12) protein_coding-promoter-TSS (ENSMUSG00000057177.12) -7198 ENSMUSG00000057177.12 ENSMUSG00000057177 ENSMUST00000206654 Gsk3a protein_coding Interval_42707 chr13 18267218 18267452 + 0 NA intron (ENSMUSG00000009734.18, intron 2 of 5) protein_coding-intron (ENSMUSG00000009734.18, intron 2 of 7) 130351 ENSMUSG00000009734.18 ENSMUSG00000009734 ENSMUST00000222900 Pou6f2 protein_coding Interval_86094 chr19 36538099 36539288 + 0 NA Intergenic Intergenic -46796 ENSMUSG00000041180.13 ENSMUSG00000041180 ENSMUST00000142404 Hectd2 protein_coding Interval_35250 chr12 18983071 18983265 + 0 NA Intergenic Intergenic -8315 ENSMUSG00000113040.1 ENSMUSG00000113040 ENSMUST00000221420 Gm9249 unprocessed_pseudogene Interval_172402 chrX 17751064 17752989 + 0 NA Intergenic Intergenic -75742 ENSMUSG00000081614.1 ENSMUSG00000081614 ENSMUST00000120949 Gm9436 processed_pseudogene Interval_173413 chrX 91210210 91210872 + 0 NA Intergenic Intergenic 42206 ENSMUSG00000080427.1 ENSMUSG00000080427 ENSMUST00000116777 Gm24835 miRNA Interval_2858 chr1 46845226 46845432 + 0 NA intron (ENSMUSG00000025986.6, intron 1 of 1) protein_coding-intron (ENSMUSG00000025986.6, intron 1 of 9) 5150 ENSMUSG00000100213.1 ENSMUSG00000100213 ENSMUST00000189404 Gm28151 lincRNA Interval_45068 chr13 51836603 51837034 + 0 NA Intergenic Intergenic -9926 ENSMUSG00000021453.2 ENSMUSG00000021453 ENSMUST00000132480 Gadd45g protein_coding Interval_169956 chr9 103201312 103202261 + 0 NA intron (ENSMUSG00000032553.14, intron 1 of 5) protein_coding-intron (ENSMUSG00000032553.14, intron 1 of 6) -9474 ENSMUSG00000032553.14 ENSMUSG00000032553 ENSMUST00000190760 Srprb protein_coding Interval_122207 chr5 19787303 19788243 + 0 NA intron (ENSMUSG00000040003.18, intron 2 of 20) protein_coding-intron (ENSMUSG00000040003.18, intron 2 of 22) -272266 ENSMUSG00000088668.1 ENSMUSG00000088668 ENSMUST00000158043 Gm25335 snRNA Interval_20645 chr10 119943778 119944435 + 0 NA intron (ENSMUSG00000034813.18, intron 6 of 23) protein_coding-intron (ENSMUSG00000034813.18, intron 6 of 22) -91829 ENSMUSG00000085418.1 ENSMUSG00000085418 ENSMUST00000135940 Grip1os1 antisense Interval_159552 chr8 95409452 95409674 + 0 NA Intergenic Intergenic 25281 ENSMUSG00000031796.7 ENSMUSG00000031796 ENSMUST00000212131 Cfap20 protein_coding Interval_47683 chr13 91211086 91211835 + 0 NA intron (ENSMUSG00000021619.6, intron 1 of 6) protein_coding-intron (ENSMUSG00000021619.6, intron 1 of 7) -8992 ENSMUSG00000091419.2 ENSMUSG00000091419 ENSMUST00000164671 Gm17450 pseudogene Interval_30278 chr11 92781656 92782192 + 0 NA Intergenic Intergenic -10951 ENSMUSG00000081363.2 ENSMUSG00000081363 ENSMUST00000118237 Gm11500 processed_pseudogene Interval_62342 chr15 90608787 90609026 + 0 NA intron (ENSMUSG00000052560.15, intron 5 of 19) protein_coding-intron (ENSMUSG00000052560.15, intron 5 of 19) 47559 ENSMUSG00000078847.1 ENSMUSG00000078847 ENSMUST00000108774 Gm6746 processed_pseudogene Interval_131314 chr5 136375028 136375971 + 0 NA TTS (ENSMUSG00000106479.1) miRNA-TTS (ENSMUSG00000106479.1) 304 ENSMUSG00000106479.1 ENSMUSG00000106479 ENSMUST00000200230 Mir721 miRNA Interval_13787 chr10 22125297 22125982 + 0 NA TTS (ENSMUSG00000097795.1) processed_pseudogene-TTS (ENSMUSG00000097795.1) 1143 ENSMUSG00000097795.1 ENSMUSG00000097795 ENSMUST00000181879 Gm7678 processed_pseudogene Interval_80074 chr18 37307387 37308256 + 0 NA exon (ENSMUSG00000045689.3, exon 1 of 1) protein_coding-exon (ENSMUSG00000045689.3, exon 1 of 1) 366 ENSMUSG00000045689.3 ENSMUSG00000045689 ENSMUST00000056712 Pcdhb4 protein_coding Interval_169183 chr9 95329936 95330148 + 0 NA Intergenic Intergenic 76680 ENSMUSG00000033350.7 ENSMUSG00000033350 ENSMUST00000036267 Chst2 protein_coding Interval_64649 chr16 13874228 13874686 + 0 NA intron (ENSMUSG00000022680.14, intron 6 of 22) protein_coding-intron (ENSMUSG00000022680.14, intron 6 of 23) 28525 ENSMUSG00000022680.14 ENSMUSG00000022680 ENSMUST00000137715 Pdxdc1 protein_coding Interval_1591 chr1 28565222 28565593 + 0 NA Intergenic Intergenic -4511 ENSMUSG00000103241.1 ENSMUSG00000103241 ENSMUST00000193585 Gm38089 TEC Interval_142900 chr6 146795370 146796601 + 0 NA promoter-TSS (ENSMUSG00000040187.15) protein_coding-promoter-TSS (ENSMUSG00000040187.15) 13516 ENSMUSG00000107788.1 ENSMUSG00000107788 ENSMUST00000203844 Gm6266 processed_pseudogene Interval_168194 chr9 77896712 77896969 + 0 NA Intergenic Intergenic -4689 ENSMUSG00000110724.1 ENSMUSG00000110724 ENSMUST00000217099 Gm47824 TEC Interval_11420 chr1 181845005 181845847 + 0 NA Intergenic Intergenic -2567 ENSMUSG00000004880.11 ENSMUSG00000004880 ENSMUST00000193028 Lbr protein_coding Interval_99342 chr2 159646356 159646666 + 0 NA Intergenic Intergenic 131696 ENSMUSG00000083451.1 ENSMUSG00000083451 ENSMUST00000119101 Gm11445 processed_pseudogene Interval_1070 chr1 14839936 14840535 + 0 NA promoter-TSS (ENSMUSG00000081201.1) processed_pseudogene-promoter-TSS (ENSMUSG00000081201.1) -79 ENSMUSG00000081201.1 ENSMUSG00000081201 ENSMUST00000121569 Smt3h2-ps4 processed_pseudogene Interval_33038 chr11 113809680 113810217 + 0 NA intron (ENSMUSG00000041592.16, intron 1 of 4) protein_coding-intron (ENSMUSG00000041592.16, intron 37 of 44) 475 ENSMUSG00000041592.16 ENSMUSG00000041592 ENSMUST00000144301 Sdk2 protein_coding Interval_54693 chr14 73384629 73385587 + 0 NA promoter-TSS (ENSMUSG00000022108.8) protein_coding-promoter-TSS (ENSMUSG00000022108.8) -15984 ENSMUSG00000022108.8 ENSMUSG00000022108 ENSMUST00000228637 Itm2b protein_coding Interval_12803 chr10 5634359 5634970 + 0 NA Intergenic Intergenic -5688 ENSMUSG00000019772.5 ENSMUSG00000019772 ENSMUST00000217331 Vip protein_coding Interval_97788 chr2 144085032 144087113 + 0 NA Intergenic Intergenic -17289 ENSMUSG00000086384.1 ENSMUSG00000086384 ENSMUST00000145504 Banf2os antisense Interval_128914 chr5 116042872 116043753 + 0 NA intron (ENSMUSG00000079278.2, intron 2 of 2) protein_coding-intron (ENSMUSG00000079278.2, intron 2 of 2) -10999 ENSMUSG00000090728.1 ENSMUSG00000090728 ENSMUST00000164753 Gm17420 pseudogene Interval_104562 chr3 68243198 68243737 + 0 NA intron (ENSMUSG00000027777.15, intron 1 of 6) protein_coding-intron (ENSMUSG00000027777.15, intron 1 of 7) -89729 ENSMUSG00000102846.1 ENSMUSG00000102846 ENSMUST00000193165 Gm10292 processed_pseudogene Interval_97759 chr2 143889838 143891562 + 0 NA Intergenic Intergenic 9523 ENSMUSG00000080711.3 ENSMUSG00000080711 ENSMUST00000122397 Gm11686 processed_pseudogene Interval_86584 chr19 41886223 41887361 + 0 NA intron (ENSMUSG00000035049.4, intron 8 of 33) protein_coding-intron (ENSMUSG00000035049.4, intron 8 of 33) 9381 ENSMUSG00000035049.4 ENSMUSG00000035049 ENSMUST00000038677 Rrp12 protein_coding Interval_64492 chr16 12608284 12608760 + 0 NA Intergenic Intergenic -95846 ENSMUSG00000116197.1 ENSMUSG00000116197 ENSMUST00000230690 Gm38619 lincRNA Interval_28234 chr11 74581263 74581802 + 0 NA intron (ENSMUSG00000038807.19, intron 2 of 25) protein_coding-intron (ENSMUSG00000038807.19, intron 2 of 25) 29383 ENSMUSG00000038807.19 ENSMUSG00000038807 ENSMUST00000145524 Rap1gap2 protein_coding Interval_112654 chr4 43848816 43849092 + 0 NA Intergenic Intergenic -2611 ENSMUSG00000071000.3 ENSMUSG00000071000 ENSMUST00000095108 Olfr155 protein_coding Interval_65220 chr16 20629517 20630939 + 0 NA promoter-TSS (ENSMUSG00000022842.18) protein_coding-promoter-TSS (ENSMUSG00000022842.18) -8941 ENSMUSG00000051146.2 ENSMUSG00000051146 ENSMUST00000052939 Camk2n2 protein_coding Interval_114694 chr4 83888314 83888981 + 0 NA intron (ENSMUSG00000085378.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000085378.1, intron 1 of 2) 211 ENSMUSG00000085378.1 ENSMUSG00000085378 ENSMUST00000128214 Gm11415 lincRNA Interval_39173 chr12 85610527 85610770 + 0 NA intron (ENSMUSG00000034271.16, intron 2 of 3) protein_coding-intron (ENSMUSG00000034271.16, intron 2 of 3) 8426 ENSMUSG00000034271.16 ENSMUSG00000034271 ENSMUST00000222689 Jdp2 protein_coding Interval_43349 chr13 29505452 29505764 + 0 NA intron (ENSMUSG00000006191.17, intron 1 of 2) protein_coding-intron (ENSMUSG00000006191.17, intron 11 of 15) 11846 ENSMUSG00000006191.17 ENSMUSG00000006191 ENSMUST00000129231 Cdkal1 protein_coding Interval_129130 chr5 117604375 117604677 + 0 NA intron (ENSMUSG00000061578.8, intron 4 of 20) protein_coding-intron (ENSMUSG00000061578.8, intron 4 of 20) 83827 ENSMUSG00000107199.1 ENSMUSG00000107199 ENSMUST00000201553 Gm42550 TEC Interval_3764 chr1 62929319 62930033 + 0 NA Intergenic Intergenic -96066 ENSMUSG00000104991.1 ENSMUSG00000104991 ENSMUST00000199516 Gm44468 miRNA Interval_48259 chr13 97491407 97495890 + 0 NA intron (ENSMUSG00000078952.9, intron 2 of 2) lincRNA-intron (ENSMUSG00000078952.9, intron 1 of 1) 10693 ENSMUSG00000078952.9 ENSMUSG00000078952 ENSMUST00000180371 Lncenc1 lincRNA Interval_1071 chr1 14918149 14920312 + 0 NA promoter-TSS (ENSMUSG00000032769.5) protein_coding-promoter-TSS (ENSMUSG00000032769.5) -395 ENSMUSG00000032769.5 ENSMUSG00000032769 ENSMUST00000235071 Trpa1 protein_coding Interval_19377 chr10 98618968 98619179 + 0 NA Intergenic Intergenic 80637 ENSMUSG00000112647.1 ENSMUSG00000112647 ENSMUST00000217680 Gm5427 lincRNA Interval_115406 chr4 98711661 98712117 + 0 NA intron (ENSMUSG00000061859.17, intron 44 of 44) protein_coding-intron (ENSMUSG00000061859.17, intron 43 of 43) -21314 ENSMUSG00000087166.9 ENSMUSG00000087166 ENSMUST00000173659 L1td1 protein_coding Interval_148106 chr7 79262138 79263483 + 0 NA Intergenic Intergenic 10001 ENSMUSG00000108387.1 ENSMUSG00000108387 ENSMUST00000206434 Gm31510 bidirectional_promoter_lncRNA Interval_58202 chr15 30716099 30716871 + 0 NA intron (ENSMUSG00000022240.10, intron 1 of 2) protein_coding-intron (ENSMUSG00000022240.10, intron 9 of 22) -89864 ENSMUSG00000115337.1 ENSMUSG00000115337 ENSMUST00000228499 4930570B17Rik antisense Interval_89347 chr2 19600933 19601249 + 0 NA Intergenic Intergenic 35895 ENSMUSG00000086621.1 ENSMUSG00000086621 ENSMUST00000147324 Gm13348 antisense Interval_6613 chr1 118310777 118312381 + 0 NA promoter-TSS (ENSMUSG00000026374.14) protein_coding-promoter-TSS (ENSMUSG00000026374.14) -117 ENSMUSG00000026374.14 ENSMUSG00000026374 ENSMUST00000186163 Tsn protein_coding Interval_163967 chr9 29938845 29939051 + 0 NA intron (ENSMUSG00000059974.10, intron 1 of 2) protein_coding-intron (ENSMUSG00000059974.10, intron 1 of 7) 124771 ENSMUSG00000111175.1 ENSMUSG00000111175 ENSMUST00000214849 Gm19640 processed_pseudogene Interval_7120 chr1 126431778 126432062 + 0 NA intron (ENSMUSG00000049690.15, intron 2 of 10) protein_coding-intron (ENSMUSG00000049690.15, intron 1 of 12) 60822 ENSMUSG00000049690.15 ENSMUSG00000049690 ENSMUST00000162647 Nckap5 protein_coding Interval_33554 chr11 117183720 117184234 + 0 NA Intergenic Intergenic 28908 ENSMUSG00000020823.16 ENSMUSG00000020823 ENSMUST00000153437 Sec14l1 protein_coding Interval_47191 chr13 77639760 77640391 + 0 NA Intergenic Intergenic 30400 ENSMUSG00000114809.1 ENSMUSG00000114809 ENSMUST00000223639 Atp5c1-ps processed_pseudogene Interval_23787 chr11 26255262 26255647 + 0 NA Intergenic Intergenic 53214 ENSMUSG00000099015.1 ENSMUSG00000099015 ENSMUST00000185114 Mir6372 miRNA Interval_163847 chr9 27115864 27116169 + 0 NA intron (ENSMUSG00000031990.15, intron 1 of 2) protein_coding-intron (ENSMUSG00000031990.15, intron 1 of 8) 10534 ENSMUSG00000031990.15 ENSMUSG00000031990 ENSMUST00000213682 Jam3 protein_coding Interval_26288 chr11 55810667 55811209 + 0 NA intron (ENSMUSG00000086020.1, intron 1 of 4) antisense-intron (ENSMUSG00000086020.1, intron 1 of 4) 38850 ENSMUSG00000086020.1 ENSMUSG00000086020 ENSMUST00000134285 Gm12239 antisense Interval_140626 chr6 120185088 120185980 + 0 NA intron (ENSMUSG00000041377.12, intron 1 of 3) protein_coding-intron (ENSMUSG00000041377.12, intron 1 of 3) -41784 ENSMUSG00000095086.1 ENSMUSG00000095086 ENSMUST00000180263 Gm25327 snRNA Interval_42238 chr13 10636902 10637151 + 0 NA intron (ENSMUSG00000097009.2, intron 3 of 10) antisense-intron (ENSMUSG00000097009.2, intron 6 of 7) -44460 ENSMUSG00000093260.1 ENSMUSG00000093260 ENSMUST00000175519 Gm23415 miRNA Interval_127958 chr5 109848718 109849628 + 0 NA Intergenic Intergenic -15028 ENSMUSG00000105044.1 ENSMUSG00000105044 ENSMUST00000197379 Gm10416 TEC Interval_164574 chr9 39115803 39115972 + 0 NA Intergenic Intergenic -10904 ENSMUSG00000111018.1 ENSMUSG00000111018 ENSMUST00000215258 Olfr941-ps1 unprocessed_pseudogene Interval_36983 chr12 55877973 55878361 + 0 NA Intergenic Intergenic 32756 ENSMUSG00000065244.1 ENSMUSG00000065244 ENSMUST00000083310 Gm22296 snRNA Interval_167093 chr9 65201213 65202302 + 0 NA promoter-TSS (ENSMUSG00000095892.1) snRNA-promoter-TSS (ENSMUSG00000095892.1) 84 ENSMUSG00000095892.1 ENSMUSG00000095892 ENSMUST00000093721 Rnu5g snRNA Interval_61006 chr15 78717966 78720678 + 0 NA promoter-TSS (ENSMUSG00000043460.7) protein_coding-promoter-TSS (ENSMUSG00000043460.7) -44096 ENSMUSG00000043460.7 ENSMUSG00000043460 ENSMUST00000229550 Elfn2 protein_coding Interval_148414 chr7 81118120 81118398 + 0 NA intron (ENSMUSG00000025726.11, intron 4 of 17) protein_coding-intron (ENSMUSG00000025726.11, intron 4 of 17) 3409 ENSMUSG00000025726.11 ENSMUSG00000025726 ENSMUST00000119083 Slc28a1 protein_coding Interval_132050 chr5 142489020 142489223 + 0 NA intron (ENSMUSG00000029576.17, intron 9 of 13) protein_coding-intron (ENSMUSG00000029576.17, intron 9 of 14) -1552 ENSMUSG00000029576.17 ENSMUSG00000029576 ENSMUST00000129212 Radil protein_coding Interval_38025 chr12 74089461 74089691 + 0 NA intron (ENSMUSG00000044912.11, intron 1 of 3) protein_coding-intron (ENSMUSG00000044912.11, intron 1 of 7) -72641 ENSMUSG00000044912.11 ENSMUSG00000044912 ENSMUST00000238790 Syt16 protein_coding Interval_8058 chr1 135495052 135495680 + 0 NA intron (ENSMUSG00000009418.16, intron 6 of 30) protein_coding-intron (ENSMUSG00000009418.16, intron 3 of 29) -13952 ENSMUSG00000102474.1 ENSMUSG00000102474 ENSMUST00000193434 2610012C04Rik TEC Interval_170561 chr9 108702117 108705204 + 0 NA intron (ENSMUSG00000032601.13, intron 1 of 9) protein_coding-intron (ENSMUSG00000032601.13, intron 1 of 10) 11203 ENSMUSG00000032601.13 ENSMUSG00000032601 ENSMUST00000195263 Prkar2a protein_coding Interval_11280 chr1 180672479 180672820 + 0 NA intron (ENSMUSG00000058729.13, intron 5 of 5) protein_coding-intron (ENSMUSG00000058729.13, intron 10 of 11) -8238 ENSMUSG00000058729.13 ENSMUSG00000058729 ENSMUST00000194847 Lin9 protein_coding Interval_16897 chr10 69607593 69607982 + 0 NA intron (ENSMUSG00000069601.14, intron 2 of 2) protein_coding-intron (ENSMUSG00000069601.14, intron 1 of 16) -41426 ENSMUSG00000112729.1 ENSMUSG00000112729 ENSMUST00000220152 Gm46231 processed_pseudogene Interval_82286 chr18 70104427 70104624 + 0 NA intron (ENSMUSG00000024511.15, intron 2 of 6) protein_coding-intron (ENSMUSG00000024511.15, intron 2 of 6) 34302 ENSMUSG00000117678.1 ENSMUSG00000117678 ENSMUST00000237601 Gm50219 processed_pseudogene Interval_64274 chr16 10113506 10113835 + 0 NA Intergenic Intergenic -56556 ENSMUSG00000039209.12 ENSMUSG00000039209 ENSMUST00000044103 Rpl39l protein_coding Interval_2298 chr1 37889461 37890782 + 0 NA promoter-TSS (ENSMUSG00000026087.11) protein_coding-promoter-TSS (ENSMUSG00000026087.11) 286 ENSMUSG00000026088.15 ENSMUSG00000026088 ENSMUST00000138806 Mitd1 protein_coding Interval_115710 chr4 102874022 102874575 + 0 NA intron (ENSMUSG00000028524.21, intron 7 of 10) protein_coding-intron (ENSMUSG00000028524.21, intron 7 of 23) -104393 ENSMUSG00000028523.14 ENSMUSG00000028523 ENSMUST00000139883 Tctex1d1 protein_coding Interval_116759 chr4 117131760 117132345 + 0 NA intron (ENSMUSG00000028680.14, intron 5 of 14) protein_coding-intron (ENSMUSG00000028680.14, intron 5 of 14) 1747 ENSMUSG00000028680.14 ENSMUSG00000028680 ENSMUST00000147730 Plk3 protein_coding Interval_141912 chr6 135309603 135310402 + 0 NA exon (ENSMUSG00000047104.5, exon 1 of 1) protein_coding-exon (ENSMUSG00000047104.5, exon 1 of 1) 403 ENSMUSG00000047104.5 ENSMUSG00000047104 ENSMUST00000050471 Pbp2 protein_coding Interval_163409 chr9 21308994 21309916 + 0 NA intron (ENSMUSG00000003309.14, intron 2 of 9) protein_coding-intron (ENSMUSG00000003309.14, intron 2 of 10) 2861 ENSMUSG00000003309.14 ENSMUSG00000003309 ENSMUST00000213250 Ap1m2 protein_coding Interval_136466 chr6 54708508 54709124 + 0 NA Intergenic Intergenic 15170 ENSMUSG00000108283.1 ENSMUSG00000108283 ENSMUST00000204345 Gm44008 TEC Interval_55261 chr14 79754308 79755002 + 0 NA Intergenic Intergenic -15253 ENSMUSG00000102774.1 ENSMUSG00000102774 ENSMUST00000193759 Gm9748 antisense Interval_78113 chr18 8379728 8379988 + 0 NA Intergenic Intergenic -35271 ENSMUSG00000117484.1 ENSMUSG00000117484 ENSMUST00000234117 Gm5500 processed_pseudogene Interval_19613 chr10 105785850 105786067 + 0 NA intron (ENSMUSG00000036009.16, intron 9 of 12) protein_coding-intron (ENSMUSG00000036009.16, intron 8 of 11) 18239 ENSMUSG00000084545.1 ENSMUSG00000084545 ENSMUST00000122596 n-R5s80 rRNA Interval_49045 chr13 107325873 107326143 + 0 NA Intergenic Intergenic -22196 ENSMUSG00000114459.1 ENSMUSG00000114459 ENSMUST00000224355 Gm2736 processed_pseudogene Interval_98043 chr2 147083687 147085702 + 0 NA intron (ENSMUSG00000054160.2, intron 1 of 1) protein_coding-intron (ENSMUSG00000054160.2, intron 1 of 1) 751 ENSMUSG00000054160.2 ENSMUSG00000054160 ENSMUST00000067020 Nkx2-4 protein_coding Interval_20301 chr10 116740563 116741322 + 0 NA Intergenic Intergenic 11689 ENSMUSG00000112924.1 ENSMUSG00000112924 ENSMUST00000218193 4930579P08Rik lincRNA Interval_81939 chr18 66052178 66052452 + 0 NA intron (ENSMUSG00000046318.16, intron 9 of 9) protein_coding-intron (ENSMUSG00000046318.16, intron 9 of 9) 15488 ENSMUSG00000117907.1 ENSMUSG00000117907 ENSMUST00000235539 Gm50142 lincRNA Interval_80117 chr18 37722018 37722801 + 0 NA exon (ENSMUSG00000103585.1, exon 1 of 2) protein_coding-exon (ENSMUSG00000103585.1, exon 1 of 2) 2040 ENSMUSG00000103585.1 ENSMUSG00000103585 ENSMUST00000195069 Pcdhgb4 protein_coding Interval_110600 chr4 4467326 4467846 + 0 NA Intergenic Intergenic 61133 ENSMUSG00000085155.3 ENSMUSG00000085155 ENSMUST00000136880 Gm11780 processed_pseudogene Interval_35151 chr12 17620018 17620685 + 0 NA Intergenic Intergenic -15045 ENSMUSG00000114062.1 ENSMUSG00000114062 ENSMUST00000222628 Gm48313 lincRNA Interval_119068 chr4 135312490 135314236 + 0 NA Intergenic Intergenic -5393 ENSMUSG00000082833.1 ENSMUSG00000082833 ENSMUST00000117408 Gm12982 processed_pseudogene Interval_79114 chr18 24671117 24671571 + 0 NA intron (ENSMUSG00000039616.10, intron 5 of 11) protein_coding-intron (ENSMUSG00000039616.10, intron 5 of 14) 14938 ENSMUSG00000084472.1 ENSMUSG00000084472 ENSMUST00000122523 n-R5s23 rRNA Interval_139131 chr6 95701684 95702671 + 0 NA intron (ENSMUSG00000061838.7, intron 1 of 10) protein_coding-intron (ENSMUSG00000061838.7, intron 1 of 1) -44709 ENSMUSG00000061838.7 ENSMUSG00000061838 ENSMUST00000203109 Suclg2 protein_coding Interval_80977 chr18 51988256 51988937 + 0 NA Intergenic Intergenic -61086 ENSMUSG00000118334.1 ENSMUSG00000118334 ENSMUST00000237836 Gm50446 lincRNA Interval_155881 chr8 40593665 40594181 + 0 NA intron (ENSMUSG00000039431.16, intron 4 of 11) protein_coding-intron (ENSMUSG00000039431.16, intron 4 of 14) 40874 ENSMUSG00000039431.16 ENSMUSG00000039431 ENSMUST00000174537 Mtmr7 protein_coding Interval_94544 chr2 92058184 92060354 + 0 NA promoter-TSS (ENSMUSG00000087018.1) lincRNA-promoter-TSS (ENSMUSG00000087018.1) 100 ENSMUSG00000087018.1 ENSMUSG00000087018 ENSMUST00000123840 2900072N19Rik lincRNA Interval_144442 chr7 25192168 25192757 + 0 NA Intergenic Intergenic 25263 ENSMUSG00000098325.1 ENSMUSG00000098325 ENSMUST00000184632 Mir7048 miRNA Interval_77176 chr17 87106717 87108361 + 0 NA promoter-TSS (ENSMUSG00000037104.9) protein_coding-promoter-TSS (ENSMUSG00000037104.9) -152 ENSMUSG00000037104.9 ENSMUSG00000037104 ENSMUST00000234421 Socs5 protein_coding Interval_118379 chr4 130988409 130988794 + 0 NA intron (ENSMUSG00000085804.1, intron 2 of 3) lincRNA-intron (ENSMUSG00000085804.1, intron 2 of 3) 13811 ENSMUSG00000085804.1 ENSMUSG00000085804 ENSMUST00000143967 Gm12973 lincRNA Interval_20547 chr10 118802973 118805018 + 0 NA TTS (ENSMUSG00000112198.1) lincRNA-TTS (ENSMUSG00000112198.1) 1264 ENSMUSG00000112198.1 ENSMUSG00000112198 ENSMUST00000218715 Gm4065 lincRNA Interval_160737 chr8 111891807 111892611 + 0 NA intron (ENSMUSG00000031952.5, intron 1 of 1) protein_coding-intron (ENSMUSG00000031952.5, intron 1 of 1) 12905 ENSMUSG00000089000.1 ENSMUSG00000089000 ENSMUST00000158375 Gm23853 snRNA Interval_167370 chr9 67877304 67877500 + 0 NA intron (ENSMUSG00000035284.10, intron 10 of 26) protein_coding-intron (ENSMUSG00000035284.10, intron 10 of 84) 36990 ENSMUSG00000035284.10 ENSMUSG00000035284 ENSMUST00000215524 Vps13c protein_coding Interval_112324 chr4 40500492 40501154 + 0 NA intron (ENSMUSG00000086355.1, intron 3 of 6) lincRNA-intron (ENSMUSG00000086355.1, intron 3 of 6) 24725 ENSMUSG00000086355.1 ENSMUSG00000086355 ENSMUST00000146043 4933428C19Rik lincRNA Interval_20294 chr10 116707436 116707700 + 0 NA Intergenic Intergenic 21609 ENSMUSG00000100198.1 ENSMUSG00000100198 ENSMUST00000185546 1700030O20Rik lincRNA Interval_74856 chr17 56897203 56898329 + 0 NA intron (ENSMUSG00000024212.9, intron 2 of 2) protein_coding-intron (ENSMUSG00000024212.9, intron 6 of 11) 7980 ENSMUSG00000024212.9 ENSMUSG00000024212 ENSMUST00000233063 Mllt1 protein_coding Interval_62723 chr15 96474554 96474742 + 0 NA Intergenic Intergenic -19929 ENSMUSG00000116253.1 ENSMUSG00000116253 ENSMUST00000229198 Gm41392 lincRNA Interval_61719 chr15 83569558 83570844 + 0 NA intron (ENSMUSG00000041736.7, intron 1 of 2) protein_coding-intron (ENSMUSG00000041736.7, intron 1 of 3) 6326 ENSMUSG00000041736.7 ENSMUSG00000041736 ENSMUST00000208463 Tspo protein_coding Interval_158090 chr8 78660424 78660635 + 0 NA intron (ENSMUSG00000031684.11, intron 1 of 2) protein_coding-intron (ENSMUSG00000031684.11, intron 5 of 11) 56235 ENSMUSG00000110244.1 ENSMUSG00000110244 ENSMUST00000211775 Gm2253 processed_pseudogene Interval_155659 chr8 35765236 35766506 + 0 NA promoter-TSS (ENSMUSG00000109372.1) protein_coding-promoter-TSS (ENSMUSG00000109372.1) 81 ENSMUSG00000109372.1 ENSMUSG00000109372 ENSMUST00000207505 Gm19410 protein_coding Interval_10954 chr1 177545217 177546070 + 0 NA Intergenic Intergenic 48879 ENSMUSG00000102885.1 ENSMUSG00000102885 ENSMUST00000194583 Gm37280 lincRNA Interval_85316 chr19 24619629 24620475 + 0 NA Intergenic Intergenic -53956 ENSMUSG00000048572.5 ENSMUSG00000048572 ENSMUST00000057243 Tmem252 protein_coding Interval_122445 chr5 22731521 22733217 + 0 NA intron (ENSMUSG00000097207.7, intron 4 of 4) lincRNA-intron (ENSMUSG00000097207.7, intron 4 of 4) -6201 ENSMUSG00000104913.1 ENSMUSG00000104913 ENSMUST00000198588 Gm6560 processed_pseudogene Interval_77245 chr17 87555991 87556360 + 0 NA Intergenic Intergenic 15479 ENSMUSG00000117414.1 ENSMUSG00000117414 ENSMUST00000234992 Gm46587 lincRNA Interval_54021 chr14 64571083 64571313 + 0 NA Intergenic Intergenic -18497 ENSMUSG00000097545.7 ENSMUSG00000097545 ENSMUST00000186703 Mir124a-1hg lincRNA Interval_108351 chr3 124765323 124765970 + 0 NA Intergenic Intergenic -73863 ENSMUSG00000106423.1 ENSMUSG00000106423 ENSMUST00000198883 Gm42825 lincRNA Interval_158613 chr8 84757488 84759564 + 0 NA intron (ENSMUSG00000001911.16, intron 2 of 9) protein_coding-intron (ENSMUSG00000001911.16, intron 2 of 8) 35519 ENSMUSG00000074203.4 ENSMUSG00000074203 ENSMUST00000098571 G430095P16Rik protein_coding Interval_126378 chr5 87643000 87643282 + 0 NA Intergenic Intergenic -23067 ENSMUSG00000070702.9 ENSMUSG00000070702 ENSMUST00000197788 Csn1s1 protein_coding Interval_101395 chr2 181026424 181026692 + 0 NA intron (ENSMUSG00000027577.14, intron 1 of 2) protein_coding-intron (ENSMUSG00000027577.14, intron 5 of 5) 1770 ENSMUSG00000027577.14 ENSMUSG00000027577 ENSMUST00000124400 Chrna4 protein_coding Interval_55243 chr14 79598331 79598592 + 0 NA intron (ENSMUSG00000022024.10, intron 4 of 10) protein_coding-intron (ENSMUSG00000022024.10, intron 5 of 12) 10652 ENSMUSG00000022024.10 ENSMUSG00000022024 ENSMUST00000226320 Sugt1 protein_coding Interval_153506 chr7 145283611 145284323 + 0 NA promoter-TSS (ENSMUSG00000048677.9) protein_coding-promoter-TSS (ENSMUSG00000048677.9) -45 ENSMUSG00000048677.9 ENSMUSG00000048677 ENSMUST00000209156 Tpcn2 protein_coding Interval_28793 chr11 78359811 78360930 + 0 NA intron (ENSMUSG00000002057.4, intron 8 of 8) protein_coding-intron (ENSMUSG00000002057.4, intron 8 of 8) 13459 ENSMUSG00000002058.13 ENSMUSG00000002058 ENSMUST00000125720 Unc119 protein_coding Interval_113633 chr4 57153228 57154176 + 0 NA Intergenic Intergenic -18369 ENSMUSG00000085967.1 ENSMUSG00000085967 ENSMUST00000152074 Gm12530 antisense Interval_129136 chr5 117662341 117662923 + 0 NA intron (ENSMUSG00000061578.8, intron 5 of 20) protein_coding-intron (ENSMUSG00000061578.8, intron 5 of 20) 141933 ENSMUSG00000107199.1 ENSMUSG00000107199 ENSMUST00000201553 Gm42550 TEC Interval_108458 chr3 127408198 127409433 + 0 NA intron (ENSMUSG00000032826.19, intron 1 of 1) protein_coding-intron (ENSMUSG00000032826.19, intron 1 of 14) -15109 ENSMUSG00000105822.1 ENSMUSG00000105822 ENSMUST00000199858 Gm42969 TEC Interval_48375 chr13 98600371 98601251 + 0 NA Intergenic Intergenic -12690 ENSMUSG00000114733.1 ENSMUSG00000114733 ENSMUST00000223936 Gm4815 processed_pseudogene Interval_72322 chr17 29193400 29194296 + 0 NA intron (ENSMUSG00000024008.16, intron 9 of 13) protein_coding-intron (ENSMUSG00000024008.16, intron 8 of 20) -29448 ENSMUSG00000117610.1 ENSMUSG00000117610 ENSMUST00000235091 Gm50054 TEC Interval_144734 chr7 27865790 27866111 + 0 NA intron (ENSMUSG00000020420.8, intron 5 of 5) protein_coding-intron (ENSMUSG00000020420.8, intron 3 of 3) 8423 ENSMUSG00000020420.8 ENSMUSG00000020420 ENSMUST00000053722 Zfp607a protein_coding Interval_99439 chr2 161090001 161090711 + 0 NA intron (ENSMUSG00000057133.14, intron 1 of 16) protein_coding-intron (ENSMUSG00000057133.14, intron 1 of 36) -19055 ENSMUSG00000109780.1 ENSMUSG00000109780 ENSMUST00000209874 Gm45447 antisense Interval_142346 chr6 140732849 140734082 + 0 NA intron (ENSMUSG00000079264.1, intron 1 of 1) protein_coding-intron (ENSMUSG00000079264.1, intron 1 of 1) 4181 ENSMUSG00000079264.1 ENSMUSG00000079264 ENSMUST00000111844 Gm11077 protein_coding Interval_140247 chr6 115772440 115772871 + 0 NA Intergenic Intergenic -1883 ENSMUSG00000030319.8 ENSMUSG00000030319 ENSMUST00000075995 Cand2 protein_coding Interval_78082 chr18 7810916 7811887 + 0 NA Intergenic Intergenic -23776 ENSMUSG00000064822.1 ENSMUSG00000064822 ENSMUST00000082888 Gm24292 snRNA Interval_70457 chr17 10355544 10357046 + 0 NA Intergenic Intergenic 31693 ENSMUSG00000099384.6 ENSMUSG00000099384 ENSMUST00000188715 1700110C19Rik lincRNA Interval_71231 chr17 21449714 21450682 + 0 NA promoter-TSS (ENSMUSG00000023892.8) protein_coding-promoter-TSS (ENSMUSG00000023892.8) 69 ENSMUSG00000116771.1 ENSMUSG00000116771 ENSMUST00000232563 Gm49691 antisense Interval_73385 chr17 36916278 36916512 + 0 NA Intergenic Intergenic -7397 ENSMUSG00000092239.1 ENSMUSG00000092239 ENSMUST00000174380 1700031A10Rik antisense Interval_16939 chr10 70023528 70023723 + 0 NA intron (ENSMUSG00000069601.14, intron 42 of 42) protein_coding-intron (ENSMUSG00000069601.14, intron 19 of 19) -151386 ENSMUSG00000048701.13 ENSMUSG00000048701 ENSMUST00000135607 Ccdc6 protein_coding Interval_83629 chr19 3315769 3316993 + 0 NA TTS (ENSMUSG00000118213.1) processed_pseudogene-TTS (ENSMUSG00000118213.1) 1200 ENSMUSG00000118213.1 ENSMUSG00000118213 ENSMUST00000237542 Gm50307 processed_pseudogene Interval_56059 chr14 105225481 105226120 + 0 NA Intergenic Intergenic -24210 ENSMUSG00000094275.1 ENSMUSG00000094275 ENSMUST00000177655 Gm22290 snRNA Interval_129490 chr5 120522437 120523221 + 0 NA TTS (ENSMUSG00000032754.14) protein_coding-TTS (ENSMUSG00000032754.14) 11559 ENSMUSG00000032754.14 ENSMUSG00000032754 ENSMUST00000123326 Slc8b1 protein_coding Interval_81360 chr18 59115125 59116008 + 0 NA Intergenic Intergenic 53100 ENSMUSG00000050875.11 ENSMUSG00000050875 ENSMUST00000175830 Minar2 protein_coding Interval_110787 chr4 8392010 8393002 + 0 NA Intergenic Intergenic 61741 ENSMUSG00000103127.1 ENSMUSG00000103127 ENSMUST00000194755 Gm37386 TEC Interval_38627 chr12 80654193 80654421 + 0 NA intron (ENSMUSG00000048833.9, intron 1 of 5) protein_coding-intron (ENSMUSG00000048833.9, intron 1 of 6) -5096 ENSMUSG00000112263.1 ENSMUSG00000112263 ENSMUST00000217770 Gm47874 processed_pseudogene Interval_171304 chr9 116234313 116234634 + 0 NA intron (ENSMUSG00000111324.1, intron 3 of 3) lincRNA-intron (ENSMUSG00000111324.1, intron 3 of 3) 15671 ENSMUSG00000111324.1 ENSMUSG00000111324 ENSMUST00000217302 Gm31410 lincRNA Interval_69804 chr16 96718014 96718657 + 0 NA intron (ENSMUSG00000050272.10, intron 11 of 32) protein_coding-intron (ENSMUSG00000050272.10, intron 11 of 32) -5177 ENSMUSG00000117000.1 ENSMUSG00000117000 ENSMUST00000233368 Gm32509 processed_transcript Interval_64628 chr16 13754208 13755213 + 0 NA exon (ENSMUSG00000118559.2, exon 1 of 1) protein_coding-exon (ENSMUSG00000118559.2, exon 1 of 1) 144 ENSMUSG00000118559.2 ENSMUSG00000118559 ENSMUST00000239037 A930007A09Rik protein_coding Interval_128561 chr5 114031201 114032637 + 0 NA intron (ENSMUSG00000042078.14, intron 12 of 14) protein_coding-intron (ENSMUSG00000042078.14, intron 13 of 15) 22028 ENSMUSG00000042096.15 ENSMUSG00000042096 ENSMUST00000162214 Dao protein_coding Interval_159248 chr8 92216276 92216835 + 0 NA Intergenic Intergenic -16570 ENSMUSG00000110134.1 ENSMUSG00000110134 ENSMUST00000211118 Gm45334 lincRNA Interval_171960 chr9 122960838 122961189 + 0 NA exon (ENSMUSG00000036768.6, exon 3 of 3) protein_coding-intron (ENSMUSG00000036768.6, intron 3 of 3) -10037 ENSMUSG00000032551.7 ENSMUSG00000032551 ENSMUST00000215129 1110059G10Rik protein_coding Interval_160018 chr8 105798647 105800290 + 0 NA intron (ENSMUSG00000037415.7, intron 3 of 13) protein_coding-intron (ENSMUSG00000037415.7, intron 3 of 13) 27882 ENSMUSG00000037415.7 ENSMUSG00000037415 ENSMUST00000212856 Ranbp10 protein_coding Interval_128282 chr5 112265370 112266197 + 0 NA intron (ENSMUSG00000029343.17, intron 4 of 5) protein_coding-intron (ENSMUSG00000029343.17, intron 4 of 5) 9938 ENSMUSG00000029343.17 ENSMUSG00000029343 ENSMUST00000112375 Crybb1 protein_coding Interval_86977 chr19 45295081 45296595 + 0 NA Intergenic Intergenic 8345 ENSMUSG00000100417.2 ENSMUSG00000100417 ENSMUST00000235311 Gm28578 lincRNA Interval_137993 chr6 84029726 84030233 + 0 NA intron (ENSMUSG00000033788.15, intron 1 of 55) protein_coding-intron (ENSMUSG00000033788.15, intron 1 of 54) -1609 ENSMUSG00000108142.1 ENSMUSG00000108142 ENSMUST00000203282 Gm7498 processed_pseudogene Interval_92409 chr2 59593870 59594115 + 0 NA Intergenic Intergenic -29308 ENSMUSG00000081157.1 ENSMUSG00000081157 ENSMUST00000118837 Gm13552 processed_pseudogene Interval_93507 chr2 73619417 73620078 + 0 NA intron (ENSMUSG00000056486.18, intron 4 of 6) protein_coding-intron (ENSMUSG00000056486.18, intron 3 of 5) 12816 ENSMUSG00000056486.18 ENSMUSG00000056486 ENSMUST00000230959 Chn1 protein_coding Interval_94392 chr2 90707308 90709212 + 0 NA intron (ENSMUSG00000051329.13, intron 20 of 36) protein_coding-intron (ENSMUSG00000051329.13, intron 20 of 36) 23089 ENSMUSG00000051329.13 ENSMUSG00000051329 ENSMUST00000126503 Nup160 protein_coding Interval_153046 chr7 141041712 141041973 + 0 NA Intergenic Intergenic -9747 ENSMUSG00000109703.1 ENSMUSG00000109703 ENSMUST00000210199 Gm45299 transcribed_processed_pseudogene Interval_134509 chr6 29234142 29234823 + 0 NA promoter-TSS (ENSMUSG00000089289.1) snoRNA-promoter-TSS (ENSMUSG00000089289.1) 48 ENSMUSG00000089289.1 ENSMUSG00000089289 ENSMUST00000158664 Gm26021 snoRNA Interval_68595 chr16 80231374 80231575 + 0 NA Intergenic Intergenic 94122 ENSMUSG00000088476.1 ENSMUSG00000088476 ENSMUST00000157851 Gm23083 snoRNA Interval_69321 chr16 92183144 92184488 + 0 NA intron (ENSMUSG00000116747.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000116747.1, intron 1 of 2) 5687 ENSMUSG00000116784.1 ENSMUSG00000116784 ENSMUST00000232093 Gm49716 processed_pseudogene Interval_8800 chr1 151250840 151252021 + 0 NA Intergenic Intergenic 9484 ENSMUSG00000088498.1 ENSMUSG00000088498 ENSMUST00000157873 Gm24402 snRNA Interval_108280 chr3 123264692 123265131 + 0 NA Intergenic Intergenic -2579 ENSMUSG00000039234.11 ENSMUSG00000039234 ENSMUST00000196482 Sec24d protein_coding Interval_160603 chr8 110970029 110971452 + 0 NA TTS (ENSMUSG00000031749.12) protein_coding-TTS (ENSMUSG00000031749.12) -19269 ENSMUSG00000118587.1 ENSMUSG00000118587 ENSMUST00000239383 AC132945.1 unprocessed_pseudogene Interval_30909 chr11 97180210 97180478 + 0 NA intron (ENSMUSG00000001440.5, intron 5 of 21) protein_coding-intron (ENSMUSG00000001440.5, intron 5 of 21) -14944 ENSMUSG00000001440.5 ENSMUSG00000001440 ENSMUST00000153727 Kpnb1 protein_coding Interval_81372 chr18 59696330 59697480 + 0 NA Intergenic Intergenic 41452 ENSMUSG00000089285.1 ENSMUSG00000089285 ENSMUST00000158660 Gm26028 misc_RNA Interval_78878 chr18 21098013 21098308 + 0 NA intron (ENSMUSG00000024313.8, intron 14 of 14) protein_coding-intron (ENSMUSG00000024313.8, intron 14 of 14) -21051 ENSMUSG00000062962.5 ENSMUSG00000062962 ENSMUST00000084199 Gm6378 processed_pseudogene Interval_81638 chr18 62722053 62722431 + 0 NA intron (ENSMUSG00000073551.5, intron 1 of 4) protein_coding-intron (ENSMUSG00000073551.5, intron 1 of 4) 34073 ENSMUSG00000041789.7 ENSMUSG00000041789 ENSMUST00000048109 2700046A07Rik lincRNA Interval_159504 chr8 95130590 95131802 + 0 NA intron (ENSMUSG00000031788.14, intron 4 of 4) protein_coding-intron (ENSMUSG00000031788.14, intron 3 of 19) 4530 ENSMUSG00000110428.1 ENSMUSG00000110428 ENSMUST00000212199 Gm45812 antisense Interval_142537 chr6 143146925 143147446 + 0 NA intron (ENSMUSG00000108094.1, intron 5 of 8) lincRNA-intron (ENSMUSG00000108094.1, intron 5 of 8) 6746 ENSMUSG00000108094.1 ENSMUSG00000108094 ENSMUST00000204101 Gm31108 lincRNA Interval_124705 chr5 53466538 53467846 + 0 NA intron (ENSMUSG00000039191.12, intron 1 of 6) protein_coding-intron (ENSMUSG00000039191.12, intron 1 of 6) 48619 ENSMUSG00000088646.1 ENSMUSG00000088646 ENSMUST00000158021 Gm26486 rRNA Interval_72198 chr17 28533458 28533929 + 0 NA intron (ENSMUSG00000024223.3, intron 3 of 5) protein_coding-intron (ENSMUSG00000024223.3, intron 3 of 5) 2887 ENSMUSG00000024223.3 ENSMUSG00000024223 ENSMUST00000233114 Armc12 protein_coding Interval_152864 chr7 138898168 138899669 + 0 NA promoter-TSS (ENSMUSG00000078566.8) protein_coding-promoter-TSS (ENSMUSG00000078566.8) -470 ENSMUSG00000110237.1 ENSMUSG00000110237 ENSMUST00000210413 Gm18258 processed_pseudogene Interval_107093 chr3 103480650 103480842 + 0 NA Intergenic Intergenic -34946 ENSMUSG00000065029.1 ENSMUSG00000065029 ENSMUST00000083095 Gm25199 snRNA Interval_85777 chr19 30985893 30986114 + 0 NA intron (ENSMUSG00000052920.16, intron 4 of 17) protein_coding-intron (ENSMUSG00000052920.16, intron 4 of 17) -96834 ENSMUSG00000053536.7 ENSMUSG00000053536 ENSMUST00000066039 Cstf2t protein_coding Interval_156988 chr8 63909073 63909291 + 0 NA Intergenic Intergenic -23982 ENSMUSG00000109818.1 ENSMUSG00000109818 ENSMUST00000210516 Gm35713 processed_pseudogene Interval_86274 chr19 38323586 38325096 + 0 NA Intergenic Intergenic -9071 ENSMUSG00000105709.1 ENSMUSG00000105709 ENSMUST00000199966 Gm42723 antisense Interval_24703 chr11 35995580 35995834 + 0 NA promoter-TSS (ENSMUSG00000081571.1) processed_pseudogene-promoter-TSS (ENSMUSG00000081571.1) -347 ENSMUSG00000081571.1 ENSMUSG00000081571 ENSMUST00000117261 Gm12125 processed_pseudogene Interval_94225 chr2 85427901 85428106 + 0 NA Intergenic Intergenic 7866 ENSMUSG00000087973.1 ENSMUSG00000087973 ENSMUST00000157348 Gm23716 snoRNA Interval_141021 chr6 124436225 124437015 + 0 NA TTS (ENSMUSG00000008153.12) protein_coding-TTS (ENSMUSG00000008153.12) -3120 ENSMUSG00000008153.12 ENSMUSG00000008153 ENSMUST00000150774 Clstn3 protein_coding Interval_47546 chr13 87593719 87594672 + 0 NA Intergenic Intergenic 137417 ENSMUSG00000076958.1 ENSMUSG00000076958 ENSMUST00000103770 Gm24935 miRNA Interval_40740 chr12 108072838 108073071 + 0 NA Intergenic Intergenic -69540 ENSMUSG00000048251.15 ENSMUSG00000048251 ENSMUST00000109891 Bcl11b protein_coding Interval_119273 chr4 136585942 136586371 + 0 NA intron (ENSMUSG00000036940.15, intron 2 of 19) protein_coding-intron (ENSMUSG00000036940.15, intron 2 of 16) -1496 ENSMUSG00000082711.1 ENSMUSG00000082711 ENSMUST00000118562 Gm12987 processed_pseudogene Interval_116273 chr4 109217558 109219267 + 0 NA Intergenic Intergenic -16178 ENSMUSG00000028559.17 ENSMUSG00000028559 ENSMUST00000159758 Osbpl9 protein_coding Interval_8709 chr1 149474090 149474355 + 0 NA Intergenic Intergenic -24271 ENSMUSG00000101011.6 ENSMUSG00000101011 ENSMUST00000186355 Gm29398 lincRNA Interval_17739 chr10 79823925 79825050 + 0 NA promoter-TSS (ENSMUSG00000035852.11) protein_coding-promoter-TSS (ENSMUSG00000035852.11) -200 ENSMUSG00000035852.11 ENSMUSG00000035852 ENSMUST00000218531 Misp protein_coding Interval_30533 chr11 94978728 94979698 + 0 NA Intergenic Intergenic -2886 ENSMUSG00000001508.15 ENSMUSG00000001508 ENSMUST00000152042 Sgca protein_coding Interval_65467 chr16 22515134 22515898 + 0 NA intron (ENSMUSG00000089874.1, intron 1 of 1) protein_coding-intron (ENSMUSG00000022861.17, intron 20 of 23) 4036 ENSMUSG00000089874.1 ENSMUSG00000089874 ENSMUST00000159309 9230117E06Rik antisense Interval_80666 chr18 46040295 46040774 + 0 NA intron (ENSMUSG00000098284.8, intron 2 of 3) antisense-intron (ENSMUSG00000098284.8, intron 2 of 3) 72725 ENSMUSG00000104009.1 ENSMUSG00000104009 ENSMUST00000193986 Gm38337 TEC Interval_119986 chr4 141247046 141249360 + 0 NA TTS (ENSMUSG00000028919.11) protein_coding-TTS (ENSMUSG00000028919.11) 1277 ENSMUSG00000028919.11 ENSMUSG00000028919 ENSMUST00000184162 Arhgef19 protein_coding Interval_122698 chr5 24730037 24731594 + 0 NA promoter-TSS (ENSMUSG00000055235.11) protein_coding-promoter-TSS (ENSMUSG00000055235.11) -17438 ENSMUSG00000055235.11 ENSMUSG00000055235 ENSMUST00000127320 Wdr86 protein_coding Interval_124035 chr5 37695727 37696090 + 0 NA intron (ENSMUSG00000029123.8, intron 1 of 11) protein_coding-intron (ENSMUSG00000029123.8, intron 1 of 11) 21263 ENSMUSG00000029123.8 ENSMUSG00000029123 ENSMUST00000094836 Stk32b protein_coding Interval_88769 chr2 10434102 10434319 + 0 NA intron (ENSMUSG00000061186.15, intron 6 of 22) protein_coding-intron (ENSMUSG00000061186.15, intron 5 of 22) -31077 ENSMUSG00000080500.1 ENSMUSG00000080500 ENSMUST00000116850 Gm22072 miRNA Interval_34242 chr11 121550350 121550601 + 0 NA intron (ENSMUSG00000039230.14, intron 2 of 10) protein_coding-intron (ENSMUSG00000039230.14, intron 15 of 38) -31142 ENSMUSG00000039238.6 ENSMUSG00000039238 ENSMUST00000092298 Zfp750 protein_coding Interval_91816 chr2 49837352 49837807 + 0 NA intron (ENSMUSG00000026765.12, intron 1 of 9) protein_coding-intron (ENSMUSG00000026765.12, intron 1 of 9) -24631 ENSMUSG00000085357.1 ENSMUSG00000085357 ENSMUST00000125095 Gm13480 lincRNA Interval_114781 chr4 85219327 85219922 + 0 NA intron (ENSMUSG00000028488.15, intron 1 of 7) protein_coding-intron (ENSMUSG00000028488.15, intron 1 of 8) 26138 ENSMUSG00000081862.1 ENSMUSG00000081862 ENSMUST00000121508 Gm12413 processed_pseudogene Interval_29780 chr11 86741286 86741616 + 0 NA intron (ENSMUSG00000047126.17, intron 1 of 31) protein_coding-intron (ENSMUSG00000047126.17, intron 1 of 31) -14968 ENSMUSG00000047126.17 ENSMUSG00000047126 ENSMUST00000133501 Cltc protein_coding Interval_150515 chr7 111712718 111712911 + 0 NA intron (ENSMUSG00000038296.14, intron 1 of 10) protein_coding-intron (ENSMUSG00000038296.14, intron 1 of 10) 67163 ENSMUSG00000038296.14 ENSMUSG00000038296 ENSMUST00000106663 Galnt18 protein_coding Interval_137224 chr6 70343348 70343619 + 0 NA Intergenic Intergenic -2030 ENSMUSG00000096594.2 ENSMUSG00000096594 ENSMUST00000196599 Igkv8-19 IG_V_gene Interval_164079 chr9 31344198 31344555 + 0 NA intron (ENSMUSG00000042496.18, intron 10 of 20) protein_coding-intron (ENSMUSG00000042496.18, intron 9 of 20) 30823 ENSMUSG00000042496.18 ENSMUSG00000042496 ENSMUST00000074510 Prdm10 protein_coding Interval_89384 chr2 20276275 20276534 + 0 NA intron (ENSMUSG00000036617.17, intron 2 of 7) protein_coding-intron (ENSMUSG00000036617.17, intron 2 of 7) -4115 ENSMUSG00000065253.1 ENSMUSG00000065253 ENSMUST00000083319 Gm23970 snRNA Interval_5878 chr1 92902766 92903159 + 0 NA promoter-TSS (ENSMUSG00000034212.14) protein_coding-promoter-TSS (ENSMUSG00000034212.14) -4019 ENSMUSG00000047067.7 ENSMUSG00000047067 ENSMUST00000060913 Dusp28 protein_coding Interval_132263 chr5 143711249 143711903 + 0 NA intron (ENSMUSG00000051306.7, intron 17 of 17) protein_coding-intron (ENSMUSG00000051306.7, intron 17 of 17) 16441 ENSMUSG00000051306.7 ENSMUSG00000051306 ENSMUST00000129606 Usp42 protein_coding Interval_81126 chr18 54446820 54447294 + 0 NA intron (ENSMUSG00000096982.2, intron 1 of 2) lincRNA-intron (ENSMUSG00000096982.2, intron 1 of 2) 24762 ENSMUSG00000096982.2 ENSMUSG00000096982 ENSMUST00000181269 Redrum lincRNA Interval_40079 chr12 101038566 101039131 + 0 NA promoter-TSS (ENSMUSG00000114113.1) antisense-promoter-TSS (ENSMUSG00000114113.1) -244 ENSMUSG00000114113.1 ENSMUSG00000114113 ENSMUST00000220642 Gm47639 antisense Interval_46936 chr13 73560164 73560600 + 0 NA intron (ENSMUSG00000021609.6, intron 6 of 14) protein_coding-intron (ENSMUSG00000021609.6, intron 6 of 14) 23635 ENSMUSG00000021609.6 ENSMUSG00000021609 ENSMUST00000022100 Slc6a3 protein_coding Interval_545 chr1 7139354 7139971 + 0 NA intron (ENSMUSG00000051285.17, intron 2 of 5) protein_coding-intron (ENSMUSG00000051285.17, intron 2 of 5) -3076 ENSMUSG00000098201.1 ENSMUSG00000098201 ENSMUST00000182051 Gm26983 processed_pseudogene Interval_165397 chr9 47367303 47368846 + 0 NA intron (ENSMUSG00000109844.2, intron 1 of 5) lincRNA-intron (ENSMUSG00000109844.2, intron 1 of 5) -97331 ENSMUSG00000109844.2 ENSMUSG00000109844 ENSMUST00000209906 Gm31816 lincRNA Interval_14925 chr10 41197328 41197746 + 0 NA intron (ENSMUSG00000038417.4, intron 22 of 22) protein_coding-intron (ENSMUSG00000038417.4, intron 22 of 22) -18508 ENSMUSG00000093933.1 ENSMUSG00000093933 ENSMUST00000104332 Gm25526 snoRNA Interval_156279 chr8 46900859 46901579 + 0 NA Intergenic Intergenic 47580 ENSMUSG00000109759.1 ENSMUSG00000109759 ENSMUST00000210613 1700011L03Rik lincRNA Interval_164598 chr9 39904057 39904281 + 0 NA Intergenic Intergenic -3167 ENSMUSG00000095390.2 ENSMUSG00000095390 ENSMUST00000076802 Olfr229 protein_coding Interval_102728 chr3 30635609 30635915 + 0 NA intron (ENSMUSG00000027702.7, intron 6 of 10) protein_coding-intron (ENSMUSG00000027702.7, intron 6 of 10) -9568 ENSMUSG00000027703.16 ENSMUSG00000027703 ENSMUST00000108265 Lrriq4 protein_coding Interval_75666 chr17 70395754 70395945 + 0 NA intron (ENSMUSG00000003279.17, intron 4 of 8) protein_coding-intron (ENSMUSG00000003279.17, intron 4 of 14) 359733 ENSMUSG00000097282.1 ENSMUSG00000097282 ENSMUST00000181546 5031415H12Rik antisense Interval_165181 chr9 45048557 45048962 + 0 NA intron (ENSMUSG00000032092.5, intron 5 of 5) protein_coding-intron (ENSMUSG00000032092.5, intron 4 of 5) 6585 ENSMUSG00000110899.1 ENSMUSG00000110899 ENSMUST00000214803 Gm48840 TEC Interval_115159 chr4 92344237 92344564 + 0 NA Intergenic Intergenic 28948 ENSMUSG00000083296.1 ENSMUSG00000083296 ENSMUST00000119531 Gm12638 processed_pseudogene Interval_72106 chr17 28074132 28074724 + 0 NA TTS (ENSMUSG00000085521.4) transcribed_processed_pseudogene-TTS (ENSMUSG00000085521.4) 393 ENSMUSG00000062859.15 ENSMUSG00000062859 ENSMUST00000233878 Tcp11 protein_coding Interval_164461 chr9 37216278 37216489 + 0 NA intron (ENSMUSG00000032121.9, intron 1 of 3) protein_coding-intron (ENSMUSG00000032121.9, intron 1 of 3) 8160 ENSMUSG00000032121.9 ENSMUSG00000032121 ENSMUST00000034632 Tmem218 protein_coding Interval_98940 chr2 156170471 156172063 + 0 NA intron (ENSMUSG00000027620.16, intron 2 of 2) protein_coding-intron (ENSMUSG00000027620.16, intron 4 of 16) 8909 ENSMUSG00000027620.16 ENSMUSG00000027620 ENSMUST00000137340 Rbm39 protein_coding Interval_158448 chr8 83782912 83783882 + 0 NA Intergenic Intergenic 30479 ENSMUSG00000084682.1 ENSMUSG00000084682 ENSMUST00000122733 Gm22024 misc_RNA Interval_163338 chr9 20946129 20946413 + 0 NA intron (ENSMUSG00000004099.16, intron 1 of 38) protein_coding-intron (ENSMUSG00000004099.16, intron 1 of 38) 6334 ENSMUSG00000004099.16 ENSMUSG00000004099 ENSMUST00000216135 Dnmt1 protein_coding Interval_130756 chr5 130180120 130181125 + 0 NA intron (ENSMUSG00000025340.14, intron 1 of 6) protein_coding-intron (ENSMUSG00000025340.14, intron 1 of 8) -6586 ENSMUSG00000025340.14 ENSMUSG00000025340 ENSMUST00000143865 Rabgef1 protein_coding Interval_56360 chr14 118057096 118058439 + 0 NA Intergenic Intergenic 12793 ENSMUSG00000115689.1 ENSMUSG00000115689 ENSMUST00000228171 4930435M08Rik antisense Interval_51085 chr14 22286516 22286722 + 0 NA intron (ENSMUSG00000063458.13, intron 2 of 3) protein_coding-intron (ENSMUSG00000063458.13, intron 2 of 6) -250516 ENSMUSG00000114205.1 ENSMUSG00000114205 ENSMUST00000225573 Gm7480 antisense Interval_91040 chr2 34627171 34628192 + 0 NA Intergenic Intergenic 22559 ENSMUSG00000087635.3 ENSMUSG00000087635 ENSMUST00000117516 Gm13414 processed_pseudogene Interval_107781 chr3 114244875 114245096 + 0 NA Intergenic Intergenic 115596 ENSMUSG00000027966.20 ENSMUSG00000027966 ENSMUST00000184978 Col11a1 protein_coding Interval_166554 chr9 60857643 60858899 + 0 NA intron (ENSMUSG00000034485.10, intron 9 of 19) protein_coding-intron (ENSMUSG00000034485.10, intron 9 of 18) -20072 ENSMUSG00000052143.8 ENSMUSG00000052143 ENSMUST00000063858 Gm9869 antisense Interval_4583 chr1 75246615 75247172 + 0 NA TTS (ENSMUSG00000026204.15) protein_coding-TTS (ENSMUSG00000026204.15) -5429 ENSMUSG00000101840.1 ENSMUSG00000101840 ENSMUST00000191154 Gm28294 antisense Interval_3432 chr1 58303518 58304764 + 0 NA intron (ENSMUSG00000079554.2, intron 13 of 35) protein_coding-intron (ENSMUSG00000079554.2, intron 13 of 35) 11515 ENSMUSG00000089822.1 ENSMUSG00000089822 ENSMUST00000161126 Gm15759 antisense Interval_51988 chr14 34453395 34454468 + 0 NA intron (ENSMUSG00000021796.15, intron 3 of 4) protein_coding-intron (ENSMUSG00000021796.15, intron 2 of 12) -47784 ENSMUSG00000090779.1 ENSMUSG00000090779 ENSMUST00000171248 Gm17110 antisense Interval_38897 chr12 83669300 83669700 + 0 NA intron (ENSMUSG00000010608.15, intron 11 of 17) protein_coding-intron (ENSMUSG00000010608.15, intron 12 of 18) 6524 ENSMUSG00000010608.15 ENSMUSG00000010608 ENSMUST00000183181 Rbm25 protein_coding Interval_8415 chr1 138994751 138995223 + 0 NA intron (ENSMUSG00000056268.15, intron 1 of 20) protein_coding-intron (ENSMUSG00000056268.15, intron 1 of 20) -2918 ENSMUSG00000085361.2 ENSMUSG00000085361 ENSMUST00000140747 Gm16305 processed_pseudogene Interval_55713 chr14 99247539 99248281 + 0 NA intron (ENSMUSG00000022064.10, intron 8 of 8) protein_coding-intron (ENSMUSG00000022064.10, intron 17 of 17) 43726 ENSMUSG00000100172.1 ENSMUSG00000100172 ENSMUST00000186660 Gm4412 processed_pseudogene Interval_31602 chr11 101634949 101635973 + 0 NA intron (ENSMUSG00000010362.9, intron 2 of 2) protein_coding-intron (ENSMUSG00000010362.9, intron 6 of 6) 1724 ENSMUSG00000010362.9 ENSMUSG00000010362 ENSMUST00000155222 Rdm1 protein_coding Interval_172015 chr9 123519100 123519437 + 0 NA TTS (ENSMUSG00000025239.3) protein_coding-TTS (ENSMUSG00000025239.3) -10491 ENSMUSG00000025240.10 ENSMUSG00000025240 ENSMUST00000215004 Sacm1l protein_coding Interval_6690 chr1 118771402 118772592 + 0 NA Intergenic Intergenic -38139 ENSMUSG00000100040.1 ENSMUSG00000100040 ENSMUST00000190981 Gm28467 processed_pseudogene Interval_107391 chr3 107210478 107210693 + 0 NA TTS (ENSMUSG00000046213.9) protein_coding-TTS (ENSMUSG00000046213.9) 11147 ENSMUSG00000046213.9 ENSMUSG00000046213 ENSMUST00000029504 Cym protein_coding Interval_80207 chr18 38259765 38261104 + 0 NA intron (ENSMUSG00000024442.6, intron 2 of 3) protein_coding-intron (ENSMUSG00000024442.6, intron 11 of 12) 10179 ENSMUSG00000024442.6 ENSMUSG00000024442 ENSMUST00000236841 Dele1 protein_coding Interval_114891 chr4 86741732 86743075 + 0 NA Intergenic Intergenic -31852 ENSMUSG00000038024.17 ENSMUSG00000038024 ENSMUST00000128710 Dennd4c protein_coding Interval_114080 chr4 63213955 63216823 + 0 NA promoter-TSS (ENSMUSG00000045672.15) protein_coding-promoter-TSS (ENSMUSG00000045672.15) -18897 ENSMUSG00000045672.15 ENSMUSG00000045672 ENSMUST00000151992 Col27a1 protein_coding Interval_64748 chr16 15052634 15054493 + 0 NA Intergenic Intergenic 53241 ENSMUSG00000116317.1 ENSMUSG00000116317 ENSMUST00000230174 Gm49536 processed_pseudogene Interval_82586 chr18 75306638 75310461 + 0 NA Intergenic Intergenic -11232 ENSMUSG00000102047.1 ENSMUSG00000102047 ENSMUST00000186356 2010010A06Rik transcribed_processed_pseudogene Interval_135443 chr6 39388898 39389183 + 0 NA intron (ENSMUSG00000029923.4, intron 3 of 3) protein_coding-intron (ENSMUSG00000029923.4, intron 3 of 3) 7865 ENSMUSG00000029923.4 ENSMUSG00000029923 ENSMUST00000031986 Rab19 protein_coding Interval_102177 chr3 19221152 19221950 + 0 NA TTS (ENSMUSG00000027601.13) protein_coding-TTS (ENSMUSG00000027601.13) -6229 ENSMUSG00000087108.1 ENSMUSG00000087108 ENSMUST00000141455 Gm16093 antisense Interval_118177 chr4 129373081 129375334 + 0 NA intron (ENSMUSG00000028807.2, intron 1 of 4) protein_coding-intron (ENSMUSG00000028807.2, intron 1 of 4) 3909 ENSMUSG00000028807.2 ENSMUSG00000028807 ENSMUST00000030610 Zbtb8a protein_coding Interval_111121 chr4 12348007 12348909 + 0 NA Intergenic Intergenic 77059 ENSMUSG00000085909.1 ENSMUSG00000085909 ENSMUST00000155156 Gm11846 lincRNA Interval_47953 chr13 94599406 94600209 + 0 NA Intergenic Intergenic -19473 ENSMUSG00000103438.1 ENSMUSG00000103438 ENSMUST00000191800 Gm36991 TEC Interval_78395 chr18 12462743 12462957 + 0 NA intron (ENSMUSG00000024421.16, intron 23 of 74) protein_coding-intron (ENSMUSG00000024421.16, intron 23 of 74) 36612 ENSMUSG00000100090.1 ENSMUSG00000100090 ENSMUST00000187766 Gm29199 processed_pseudogene Interval_143963 chr7 18606318 18606820 + 0 NA exon (ENSMUSG00000074359.2, exon 5 of 5) protein_coding-exon (ENSMUSG00000074359.2, exon 5 of 5) 9932 ENSMUSG00000074359.2 ENSMUSG00000074359 ENSMUST00000057810 Psg23 protein_coding Interval_82836 chr18 77308054 77308597 + 0 NA intron (ENSMUSG00000032818.16, intron 1 of 20) protein_coding-intron (ENSMUSG00000032818.16, intron 1 of 20) -9647 ENSMUSG00000118108.1 ENSMUSG00000118108 ENSMUST00000238018 Gm50284 antisense Interval_59589 chr15 55659970 55660478 + 0 NA intron (ENSMUSG00000060429.12, intron 4 of 6) protein_coding-intron (ENSMUSG00000060429.12, intron 4 of 6) 42637 ENSMUSG00000022369.13 ENSMUSG00000022369 ENSMUST00000166449 Mtbp protein_coding Interval_85513 chr19 27739063 27739398 + 0 NA Intergenic Intergenic -35223 ENSMUSG00000088266.1 ENSMUSG00000088266 ENSMUST00000157641 Gm24782 snoRNA Interval_77368 chr17 88273989 88274505 + 0 NA intron (ENSMUSG00000117351.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000117351.1, intron 1 of 1) 31131 ENSMUSG00000117497.1 ENSMUSG00000117497 ENSMUST00000234925 1700116H05Rik lincRNA Interval_64740 chr16 14705235 14706461 + 0 NA promoter-TSS (ENSMUSG00000022676.7) protein_coding-promoter-TSS (ENSMUSG00000022676.7) -4 ENSMUSG00000022676.7 ENSMUSG00000022676 ENSMUST00000023356 Snai2 protein_coding Interval_151511 chr7 123177125 123177858 + 0 NA intron (ENSMUSG00000052707.8, intron 8 of 8) protein_coding-intron (ENSMUSG00000052707.8, intron 10 of 23) 5845 ENSMUSG00000052707.8 ENSMUSG00000052707 ENSMUST00000206126 Tnrc6a protein_coding Interval_19095 chr10 94513875 94515702 + 0 NA promoter-TSS (ENSMUSG00000020023.18) protein_coding-promoter-TSS (ENSMUSG00000020023.18) -36064 ENSMUSG00000020023.18 ENSMUSG00000020023 ENSMUST00000117929 Tmcc3 protein_coding Interval_20933 chr10 122234784 122235140 + 0 NA Intergenic Intergenic 35812 ENSMUSG00000112305.1 ENSMUSG00000112305 ENSMUST00000220445 Gm48875 processed_pseudogene Interval_15106 chr10 42628141 42628928 + 0 NA intron (ENSMUSG00000038280.12, intron 2 of 6) protein_coding-intron (ENSMUSG00000038280.12, intron 2 of 5) -47760 ENSMUSG00000019803.11 ENSMUSG00000019803 ENSMUST00000143891 Nr2e1 protein_coding Interval_67435 chr16 48622840 48623718 + 0 NA exon (ENSMUSG00000022652.7, exon 5 of 6) protein_coding-exon (ENSMUSG00000022652.7, exon 5 of 6) 127169 ENSMUSG00000116640.1 ENSMUSG00000116640 ENSMUST00000231404 Gm8670 processed_pseudogene Interval_78716 chr18 18735977 18736548 + 0 NA Intergenic Intergenic -396955 ENSMUSG00000117378.1 ENSMUSG00000117378 ENSMUST00000234128 Gm31086 lincRNA Interval_160751 chr8 111946600 111946796 + 0 NA intron (ENSMUSG00000031950.7, intron 2 of 2) protein_coding-intron (ENSMUSG00000031950.7, intron 3 of 3) 5630 ENSMUSG00000031950.7 ENSMUSG00000031950 ENSMUST00000133628 Gabarapl2 protein_coding Interval_43933 chr13 38140514 38141175 + 0 NA Intergenic Intergenic 10948 ENSMUSG00000103789.1 ENSMUSG00000103789 ENSMUST00000191991 Gm10129 TEC Interval_82088 chr18 67664285 67664560 + 0 NA Intergenic Intergenic 22814 ENSMUSG00000024537.5 ENSMUSG00000024537 ENSMUST00000236522 Psmg2 protein_coding Interval_82948 chr18 79926113 79926652 + 0 NA Intergenic Intergenic -7950 ENSMUSG00000117669.1 ENSMUSG00000117669 ENSMUST00000235834 Gm5509 processed_pseudogene Interval_88973 chr2 13801535 13802797 + 0 NA Intergenic Intergenic -8873 ENSMUSG00000003418.11 ENSMUSG00000003418 ENSMUST00000150781 St8sia6 protein_coding Interval_54090 chr14 65169728 65170799 + 0 NA TTS (ENSMUSG00000114658.1) lincRNA-TTS (ENSMUSG00000114658.1) 3349 ENSMUSG00000114944.1 ENSMUSG00000114944 ENSMUST00000224037 Gm48299 processed_pseudogene Interval_6459 chr1 109982101 109983515 + 0 NA promoter-TSS (ENSMUSG00000026312.17) protein_coding-promoter-TSS (ENSMUSG00000026312.17) -929 ENSMUSG00000026312.17 ENSMUSG00000026312 ENSMUST00000134301 Cdh7 protein_coding Interval_122329 chr5 21383288 21384425 + 0 NA intron (ENSMUSG00000064280.14, intron 2 of 18) protein_coding-intron (ENSMUSG00000064280.14, intron 2 of 7) 11214 ENSMUSG00000039899.5 ENSMUSG00000039899 ENSMUST00000035799 Fgl2 protein_coding Interval_170009 chr9 103607043 103607659 + 0 NA intron (ENSMUSG00000042757.16, intron 3 of 3) protein_coding-intron (ENSMUSG00000042757.16, intron 2 of 4) -7187 ENSMUSG00000102441.1 ENSMUSG00000102441 ENSMUST00000195052 Gm38032 TEC Interval_77118 chr17 86693690 86694193 + 0 NA Intergenic Intergenic -8445 ENSMUSG00000117568.1 ENSMUSG00000117568 ENSMUST00000234033 Gm18832 processed_pseudogene Interval_138552 chr6 89242206 89242798 + 0 NA Intergenic Intergenic 7100 ENSMUSG00000087799.1 ENSMUSG00000087799 ENSMUST00000157174 Gm25961 rRNA Interval_146418 chr7 45778582 45779659 + 0 NA intron (ENSMUSG00000003271.17, intron 1 of 6) protein_coding-intron (ENSMUSG00000003271.17, intron 1 of 6) 5347 ENSMUSG00000003271.17 ENSMUSG00000003271 ENSMUST00000211779 Sult2b1 protein_coding Interval_17995 chr10 81277353 81278084 + 0 NA TTS (ENSMUSG00000034917.8) protein_coding-TTS (ENSMUSG00000034917.8) 6121 ENSMUSG00000092781.1 ENSMUSG00000092781 ENSMUST00000175040 Mir3057 miRNA Interval_9977 chr1 164489574 164490668 + 0 NA TTS (ENSMUSG00000103226.1) processed_pseudogene-TTS (ENSMUSG00000103226.1) 1061 ENSMUSG00000103226.1 ENSMUSG00000103226 ENSMUST00000194377 Gm37732 processed_pseudogene Interval_17159 chr10 73011120 73012363 + 0 NA intron (ENSMUSG00000111994.1, intron 2 of 4) lincRNA-intron (ENSMUSG00000111994.1, intron 2 of 4) -61949 ENSMUSG00000112168.1 ENSMUSG00000112168 ENSMUST00000219415 Gm34776 lincRNA Interval_109618 chr3 145292317 145293835 + 0 NA exon (ENSMUSG00000028197.4, exon 1 of 60) protein_coding-exon (ENSMUSG00000028197.4, exon 1 of 60) 124968 ENSMUSG00000105619.1 ENSMUSG00000105619 ENSMUST00000197919 9530034A14Rik antisense Interval_91335 chr2 37849714 37850137 + 0 NA intron (ENSMUSG00000035392.17, intron 17 of 18) protein_coding-intron (ENSMUSG00000035392.17, intron 18 of 21) 58754 ENSMUSG00000035403.10 ENSMUSG00000035403 ENSMUST00000137693 Crb2 protein_coding Interval_161827 chr8 123041618 123042958 + 0 NA promoter-TSS (ENSMUSG00000035569.17) protein_coding-promoter-TSS (ENSMUSG00000035569.17) -11 ENSMUSG00000035569.17 ENSMUSG00000035569 ENSMUST00000212937 Ankrd11 protein_coding Interval_48391 chr13 98705687 98706687 + 0 NA Intergenic Intergenic 10323 ENSMUSG00000114689.1 ENSMUSG00000114689 ENSMUST00000224536 Gm9465 lincRNA Interval_102845 chr3 32088518 32088795 + 0 NA intron (ENSMUSG00000037610.15, intron 2 of 6) protein_coding-intron (ENSMUSG00000037610.15, intron 1 of 4) -67458 ENSMUSG00000037610.15 ENSMUSG00000037610 ENSMUST00000194796 Kcnmb2 protein_coding Interval_46223 chr13 62712352 62712808 + 0 NA intron (ENSMUSG00000074863.5, intron 1 of 6) protein_coding-intron (ENSMUSG00000074863.5, intron 2 of 4) 11629 ENSMUSG00000074863.5 ENSMUSG00000074863 ENSMUST00000220864 Platr25 protein_coding Interval_41167 chr12 111587358 111588670 + 0 NA promoter-TSS (ENSMUSG00000007411.16) protein_coding-promoter-TSS (ENSMUSG00000007411.16) -13674 ENSMUSG00000096995.2 ENSMUSG00000096995 ENSMUST00000221597 2810029C07Rik bidirectional_promoter_lncRNA Interval_110788 chr4 8397855 8399408 + 0 NA Intergenic Intergenic 55616 ENSMUSG00000103127.1 ENSMUSG00000103127 ENSMUST00000194755 Gm37386 TEC Interval_137696 chr6 80056869 80057454 + 0 NA intron (ENSMUSG00000052581.13, intron 2 of 2) protein_coding-intron (ENSMUSG00000052581.13, intron 3 of 3) 8485 ENSMUSG00000107498.1 ENSMUSG00000107498 ENSMUST00000204015 Gm44240 TEC Interval_173503 chrX 96134628 96135818 + 0 NA intron (ENSMUSG00000031207.16, intron 1 of 3) protein_coding-intron (ENSMUSG00000031207.16, intron 1 of 12) 15749 ENSMUSG00000088146.1 ENSMUSG00000088146 ENSMUST00000157521 Gm24718 scaRNA Interval_119777 chr4 139905874 139906390 + 0 NA Intergenic Intergenic -4356 ENSMUSG00000087646.1 ENSMUSG00000087646 ENSMUST00000151651 Gm1667 lincRNA Interval_156361 chr8 47698545 47699301 + 0 NA Intergenic Intergenic -14343 ENSMUSG00000097706.1 ENSMUSG00000097706 ENSMUST00000180928 E030037K01Rik antisense Interval_3519 chr1 59261702 59262098 + 0 NA intron (ENSMUSG00000026023.16, intron 3 of 13) protein_coding-intron (ENSMUSG00000026023.16, intron 3 of 13) -37036 ENSMUSG00000026023.16 ENSMUSG00000026023 ENSMUST00000162906 Cdk15 protein_coding Interval_30712 chr11 96051812 96052113 + 0 NA intron (ENSMUSG00000014349.7, intron 5 of 6) protein_coding-intron (ENSMUSG00000014349.7, intron 5 of 6) 13426 ENSMUSG00000014349.7 ENSMUSG00000014349 ENSMUST00000100528 Ube2z protein_coding Interval_30129 chr11 89531357 89531722 + 0 NA intron (ENSMUSG00000047773.15, intron 5 of 21) protein_coding-intron (ENSMUSG00000047773.15, intron 3 of 16) 228816 ENSMUSG00000085798.1 ENSMUSG00000085798 ENSMUST00000140754 Gm2018 lincRNA Interval_3029 chr1 52331560 52331747 + 0 NA Intergenic Intergenic -42558 ENSMUSG00000099648.1 ENSMUSG00000099648 ENSMUST00000185256 Gm5975 processed_pseudogene Interval_162017 chr8 124459656 124460000 + 0 NA Intergenic Intergenic -20170 ENSMUSG00000050751.14 ENSMUSG00000050751 ENSMUST00000140126 Pgbd5 protein_coding Interval_89278 chr2 18736416 18737536 + 0 NA intron (ENSMUSG00000037708.16, intron 7 of 10) protein_coding-intron (ENSMUSG00000037708.16, intron 7 of 10) -22008 ENSMUSG00000081139.1 ENSMUSG00000081139 ENSMUST00000119424 Gm13333 processed_pseudogene Interval_70197 chr17 6097668 6098489 + 0 NA Intergenic Intergenic -8780 ENSMUSG00000034377.10 ENSMUSG00000034377 ENSMUST00000137063 Tulp4 protein_coding Interval_46677 chr13 68622975 68623490 + 0 NA intron (ENSMUSG00000021536.7, intron 24 of 24) protein_coding-intron (ENSMUSG00000021536.7, intron 24 of 24) 25793 ENSMUSG00000021534.8 ENSMUSG00000021534 ENSMUST00000222604 1700001L19Rik protein_coding Interval_169075 chr9 91570502 91570704 + 0 NA Intergenic Intergenic 166129 ENSMUSG00000100341.1 ENSMUSG00000100341 ENSMUST00000191272 Gm29478 lincRNA Interval_28890 chr11 79093078 79094256 + 0 NA intron (ENSMUSG00000018334.18, intron 1 of 12) protein_coding-intron (ENSMUSG00000018334.18, intron 1 of 18) -33831 ENSMUSG00000018334.18 ENSMUSG00000018334 ENSMUST00000129463 Ksr1 protein_coding Interval_167883 chr9 73448858 73449469 + 0 NA Intergenic Intergenic 104707 ENSMUSG00000103832.1 ENSMUSG00000103832 ENSMUST00000195250 Gm37611 TEC Interval_28394 chr11 75609688 75610557 + 0 NA intron (ENSMUSG00000017781.17, intron 6 of 11) protein_coding-intron (ENSMUSG00000017781.17, intron 4 of 9) -10168 ENSMUSG00000081485.5 ENSMUSG00000081485 ENSMUST00000122170 Gm12338 processed_pseudogene Interval_89860 chr2 26066869 26068775 + 0 NA intron (ENSMUSG00000026932.14, intron 2 of 2) protein_coding-intron (ENSMUSG00000026932.14, intron 2 of 5) 8812 ENSMUSG00000087515.1 ENSMUSG00000087515 ENSMUST00000137349 Gm13554 antisense Interval_155850 chr8 40203144 40203360 + 0 NA Intergenic Intergenic 104677 ENSMUSG00000098431.1 ENSMUSG00000098431 ENSMUST00000183849 Mir7666 miRNA Interval_12855 chr10 6726056 6726393 + 0 NA Intergenic Intergenic 35537 ENSMUSG00000078488.1 ENSMUSG00000078488 ENSMUST00000105596 Gm10945 protein_coding Interval_174270 chrX 142726977 142727167 + 0 NA intron (ENSMUSG00000047045.17, intron 2 of 8) protein_coding-intron (ENSMUSG00000047045.17, intron 2 of 6) -11928 ENSMUSG00000076011.1 ENSMUSG00000076011 ENSMUST00000102057 Mir652 miRNA Interval_126758 chr5 92667437 92668215 + 0 NA intron (ENSMUSG00000050050.17, intron 3 of 9) protein_coding-intron (ENSMUSG00000050050.17, intron 3 of 24) -23942 ENSMUSG00000050050.17 ENSMUSG00000050050 ENSMUST00000150359 Ccdc158 protein_coding Interval_167903 chr9 73968245 73969131 + 0 NA exon (ENSMUSG00000062151.13, exon 1 of 33) protein_coding-exon (ENSMUSG00000062151.13, exon 1 of 33) 278 ENSMUSG00000062151.13 ENSMUSG00000062151 ENSMUST00000075245 Unc13c protein_coding Interval_44659 chr13 46986107 46986676 + 0 NA exon (ENSMUSG00000051606.5, exon 2 of 3) processed_transcript-exon (ENSMUSG00000051606.5, exon 2 of 3) 5671 ENSMUSG00000089131.1 ENSMUSG00000089131 ENSMUST00000158506 Gm24769 snoRNA Interval_154347 chr8 14896826 14897326 + 0 NA exon (ENSMUSG00000026317.7, exon 3 of 3) protein_coding-exon (ENSMUSG00000026317.7, exon 3 of 3) 8072 ENSMUSG00000026317.7 ENSMUSG00000026317 ENSMUST00000128839 Cln8 protein_coding Interval_20064 chr10 112964381 112965395 + 0 NA Intergenic Intergenic 4700 ENSMUSG00000112807.1 ENSMUSG00000112807 ENSMUST00000219465 Gm47519 TEC Interval_99412 chr2 160749305 160750374 + 0 NA exon (ENSMUSG00000035877.17, exon 3 of 3) protein_coding-exon (ENSMUSG00000035877.17, exon 3 of 3) 2070 ENSMUSG00000098889.1 ENSMUSG00000098889 ENSMUST00000154038 Gm27206 antisense Interval_68051 chr16 64756885 64757932 + 0 NA intron (ENSMUSG00000059920.9, intron 1 of 1) protein_coding-intron (ENSMUSG00000059920.9, intron 1 of 1) 9248 ENSMUSG00000059920.9 ENSMUSG00000059920 ENSMUST00000076991 4930453N24Rik protein_coding Interval_139585 chr6 101670275 101671214 + 0 NA Intergenic Intergenic 18510 ENSMUSG00000107738.1 ENSMUSG00000107738 ENSMUST00000204183 Gm32453 processed_pseudogene Interval_147896 chr7 75245374 75245643 + 0 NA intron (ENSMUSG00000053025.13, intron 1 of 12) protein_coding-intron (ENSMUSG00000053025.13, intron 1 of 12) -29581 ENSMUSG00000088683.1 ENSMUSG00000088683 ENSMUST00000158058 Gm24858 misc_RNA Interval_44029 chr13 39963373 39963773 + 0 NA Intergenic Intergenic -79192 ENSMUSG00000114957.1 ENSMUSG00000114957 ENSMUST00000224937 Gm47316 lincRNA Interval_49220 chr13 109581211 109581791 + 0 NA promoter-TSS (ENSMUSG00000021699.17) protein_coding-promoter-TSS (ENSMUSG00000021699.17) 256757 ENSMUSG00000076946.2 ENSMUSG00000076946 ENSMUST00000103758 Mir582 miRNA Interval_44056 chr13 40617441 40618526 + 0 NA Intergenic Intergenic -11504 ENSMUSG00000114198.1 ENSMUSG00000114198 ENSMUST00000223618 Gm47039 lincRNA Interval_133576 chr6 6968656 6969192 + 0 NA intron (ENSMUSG00000042505.6, intron 1 of 1) protein_coding-intron (ENSMUSG00000042505.6, intron 1 of 1) 12917 ENSMUSG00000042505.6 ENSMUSG00000042505 ENSMUST00000123848 Sdhaf3 protein_coding Interval_92994 chr2 69308157 69308718 + 0 NA intron (ENSMUSG00000027048.15, intron 7 of 28) protein_coding-intron (ENSMUSG00000027048.15, intron 7 of 28) -21302 ENSMUSG00000083592.1 ENSMUSG00000083592 ENSMUST00000117306 Gm13614 processed_pseudogene Interval_81541 chr18 61591876 61592138 + 0 NA Intergenic Intergenic 36668 ENSMUSG00000024576.14 ENSMUSG00000024576 ENSMUST00000170482 Csnk1a1 protein_coding Interval_117250 chr4 120986184 120987040 + 0 NA intron (ENSMUSG00000032870.8, intron 1 of 9) protein_coding-intron (ENSMUSG00000032870.8, intron 1 of 9) -10904 ENSMUSG00000032870.8 ENSMUSG00000032870 ENSMUST00000151615 Smap2 protein_coding Interval_117900 chr4 126958823 126959540 + 0 NA intron (ENSMUSG00000042446.16, intron 1 of 3) protein_coding-intron (ENSMUSG00000042446.16, intron 1 of 29) 8718 ENSMUSG00000042446.16 ENSMUSG00000042446 ENSMUST00000123597 Zmym4 protein_coding Interval_76618 chr17 82681463 82681808 + 0 NA Intergenic Intergenic 142375 ENSMUSG00000073371.4 ENSMUSG00000073371 ENSMUST00000097278 Gm6594 processed_pseudogene Interval_77324 chr17 88007002 88007236 + 0 NA intron (ENSMUSG00000005371.15, intron 11 of 22) protein_coding-intron (ENSMUSG00000005371.15, intron 11 of 22) 32024 ENSMUSG00000005370.4 ENSMUSG00000005370 ENSMUST00000234756 Msh6 protein_coding Interval_130131 chr5 124458437 124458678 + 0 NA intron (ENSMUSG00000049327.17, intron 5 of 6) protein_coding-intron (ENSMUSG00000049327.17, intron 6 of 7) -13870 ENSMUSG00000082402.1 ENSMUSG00000082402 ENSMUST00000119162 Gm15621 processed_pseudogene Interval_49918 chr13 118258161 118258413 + 0 NA Intergenic Intergenic -128343 ENSMUSG00000097411.2 ENSMUSG00000097411 ENSMUST00000181168 B430218F22Rik antisense Interval_80098 chr18 37498552 37499413 + 0 NA exon (ENSMUSG00000043313.6, exon 1 of 1) protein_coding-exon (ENSMUSG00000043313.6, exon 1 of 1) 1991 ENSMUSG00000043313.6 ENSMUSG00000043313 ENSMUST00000059571 Pcdhb19 protein_coding Interval_149090 chr7 93079525 93081291 + 0 NA exon (ENSMUSG00000051515.9, exon 1 of 1) protein_coding-exon (ENSMUSG00000051515.9, exon 1 of 1) 386 ENSMUSG00000054061.8 ENSMUSG00000054061 ENSMUST00000191246 Gm9934 antisense Interval_111038 chr4 11416669 11417280 + 0 NA Intergenic Intergenic 3790 ENSMUSG00000082255.1 ENSMUSG00000082255 ENSMUST00000119177 Gm11822 processed_pseudogene Interval_165855 chr9 53835902 53836491 + 0 NA Intergenic Intergenic -13968 ENSMUSG00000042045.6 ENSMUSG00000042045 ENSMUST00000048485 Sln protein_coding Interval_23288 chr11 21184556 21185710 + 0 NA Intergenic Intergenic 12843 ENSMUSG00000088223.1 ENSMUSG00000088223 ENSMUST00000157598 Gm22600 misc_RNA Interval_62577 chr15 94813799 94815350 + 0 NA intron (ENSMUSG00000063296.5, intron 3 of 7) protein_coding-intron (ENSMUSG00000063296.5, intron 3 of 7) -133188 ENSMUSG00000095169.1 ENSMUSG00000095169 ENSMUST00000103977 Gm25546 snoRNA Interval_98378 chr2 151964210 151964969 + 0 NA Intergenic Intergenic 3028 ENSMUSG00000088491.1 ENSMUSG00000088491 ENSMUST00000157866 Mir1953 miRNA Interval_166531 chr9 60674647 60674956 + 0 NA intron (ENSMUSG00000047766.15, intron 6 of 16) protein_coding-intron (ENSMUSG00000047766.15, intron 6 of 16) 12733 ENSMUSG00000047766.15 ENSMUSG00000047766 ENSMUST00000132366 Lrrc49 protein_coding Interval_148330 chr7 80549756 80550101 + 0 NA Intergenic Intergenic 42141 ENSMUSG00000091989.1 ENSMUSG00000091989 ENSMUST00000166096 Ndufab1-ps processed_pseudogene Interval_163371 chr9 21120814 21122008 + 0 NA exon (ENSMUSG00000032175.11, exon 5 of 23) protein_coding-exon (ENSMUSG00000032175.11, exon 5 of 23) 9821 ENSMUSG00000032175.11 ENSMUSG00000032175 ENSMUST00000214615 Tyk2 protein_coding Interval_152997 chr7 140708175 140708412 + 0 NA Intergenic Intergenic -9180 ENSMUSG00000110199.2 ENSMUSG00000110199 ENSMUST00000211706 Olfr542-ps1 transcribed_unprocessed_pseudogene Interval_50662 chr14 17741050 17741671 + 0 NA intron (ENSMUSG00000021779.17, intron 1 of 1) protein_coding-intron (ENSMUSG00000021779.17, intron 1 of 9) 29762 ENSMUSG00000114281.1 ENSMUSG00000114281 ENSMUST00000225878 Gm48320 processed_pseudogene Interval_398 chr1 4881576 4883018 + 0 NA intron (ENSMUSG00000033813.15, intron 3 of 9) protein_coding-intron (ENSMUSG00000033813.15, intron 3 of 9) -1646 ENSMUSG00000062588.4 ENSMUSG00000062588 ENSMUST00000078030 Gm6104 processed_pseudogene Interval_38745 chr12 81802806 81803966 + 0 NA Intergenic Intergenic 22028 ENSMUSG00000113303.1 ENSMUSG00000113303 ENSMUST00000221909 4930423D22Rik bidirectional_promoter_lncRNA Interval_9566 chr1 159459941 159461429 + 0 NA Intergenic Intergenic 31725 ENSMUSG00000103389.1 ENSMUSG00000103389 ENSMUST00000193072 Gm37757 processed_pseudogene Interval_161084 chr8 117360814 117361405 + 0 NA intron (ENSMUSG00000034390.16, intron 1 of 20) protein_coding-intron (ENSMUSG00000034390.16, intron 1 of 20) -62307 ENSMUSG00000034390.16 ENSMUSG00000034390 ENSMUST00000212884 Cmip protein_coding Interval_89619 chr2 23381188 23381572 + 0 NA intron (ENSMUSG00000069132.3, intron 1 of 1) protein_coding-intron (ENSMUSG00000069132.3, intron 1 of 1) 60134 ENSMUSG00000069132.3 ENSMUSG00000069132 ENSMUST00000102945 Nxph2 protein_coding Interval_12842 chr10 6164299 6165544 + 0 NA Intergenic Intergenic -202755 ENSMUSG00000112179.1 ENSMUSG00000112179 ENSMUST00000219296 Gm3213 processed_pseudogene Interval_56153 chr14 107849616 107850184 + 0 NA Intergenic Intergenic -25502 ENSMUSG00000115661.1 ENSMUSG00000115661 ENSMUST00000227378 Gm48976 processed_pseudogene Interval_65560 chr16 23307777 23308265 + 0 NA intron (ENSMUSG00000022885.16, intron 1 of 6) protein_coding-intron (ENSMUSG00000022885.16, intron 2 of 7) 82000 ENSMUSG00000022885.16 ENSMUSG00000022885 ENSMUST00000115335 St6gal1 protein_coding Interval_49211 chr13 109505713 109506022 + 0 NA intron (ENSMUSG00000021699.17, intron 1 of 14) protein_coding-intron (ENSMUSG00000021699.17, intron 1 of 14) 181123 ENSMUSG00000076946.2 ENSMUSG00000076946 ENSMUST00000103758 Mir582 miRNA Interval_32599 chr11 109037533 109037898 + 0 NA Intergenic Intergenic 29375 ENSMUSG00000064691.1 ENSMUSG00000064691 ENSMUST00000082757 Gm24149 snRNA Interval_55163 chr14 78775320 78777044 + 0 NA Intergenic Intergenic 14079 ENSMUSG00000115514.1 ENSMUSG00000115514 ENSMUST00000226762 Gm49009 processed_pseudogene Interval_171764 chr9 120853955 120855057 + 0 NA Intergenic Intergenic 5299 ENSMUSG00000111233.1 ENSMUSG00000111233 ENSMUST00000215206 Gm47069 lincRNA Interval_115851 chr4 105230805 105231580 + 0 NA exon (ENSMUSG00000028517.8, exon 6 of 6) protein_coding-exon (ENSMUSG00000028517.8, exon 6 of 6) 73845 ENSMUSG00000028517.8 ENSMUSG00000028517 ENSMUST00000064139 Plpp3 protein_coding Interval_133401 chr6 4677256 4678242 + 0 NA TTS (ENSMUSG00000004631.15) protein_coding-TTS (ENSMUSG00000004631.15) 46622 ENSMUSG00000015189.12 ENSMUSG00000015189 ENSMUST00000204372 Casd1 protein_coding Interval_157239 chr8 68322864 68323098 + 0 NA intron (ENSMUSG00000053886.4, intron 3 of 7) protein_coding-intron (ENSMUSG00000053886.4, intron 4 of 8) -4901 ENSMUSG00000110650.1 ENSMUSG00000110650 ENSMUST00000212440 Gm19170 processed_pseudogene Interval_14159 chr10 28178917 28179611 + 0 NA intron (ENSMUSG00000019889.10, intron 1 of 2) protein_coding-intron (ENSMUSG00000019889.10, intron 1 of 31) 34857 ENSMUSG00000076377.1 ENSMUSG00000076377 ENSMUST00000102422 Gm22370 miRNA Interval_61048 chr15 78947323 78948673 + 0 NA promoter-TSS (ENSMUSG00000033088.19) protein_coding-promoter-TSS (ENSMUSG00000033088.19) 79 ENSMUSG00000033088.19 ENSMUSG00000033088 ENSMUST00000129922 Triobp protein_coding Interval_98712 chr2 154463578 154463823 + 0 NA intron (ENSMUSG00000038533.15, intron 1 of 2) protein_coding-intron (ENSMUSG00000038533.15, intron 1 of 10) 26858 ENSMUSG00000038533.15 ENSMUSG00000038533 ENSMUST00000139506 Cbfa2t2 protein_coding Interval_125931 chr5 75908316 75908568 + 0 NA Intergenic Intergenic -1385 ENSMUSG00000088783.1 ENSMUSG00000088783 ENSMUST00000158158 Gm25374 miRNA Interval_137350 chr6 71600686 71601317 + 0 NA exon (ENSMUSG00000053470.13, exon 1 of 4) protein_coding-exon (ENSMUSG00000053470.13, exon 1 of 4) 31989 ENSMUSG00000053470.13 ENSMUSG00000053470 ENSMUST00000206597 Kdm3a protein_coding Interval_101979 chr3 14249523 14249986 + 0 NA Intergenic Intergenic 17685 ENSMUSG00000089231.1 ENSMUSG00000089231 ENSMUST00000158606 Gm23112 snoRNA Interval_96866 chr2 129110006 129111709 + 0 NA intron (ENSMUSG00000027395.15, intron 7 of 14) protein_coding-intron (ENSMUSG00000027395.15, intron 7 of 12) -10854 ENSMUSG00000027395.15 ENSMUSG00000027395 ENSMUST00000147727 Polr1b protein_coding Interval_101844 chr3 9947504 9948326 + 0 NA Intergenic Intergenic 24086 ENSMUSG00000103698.1 ENSMUSG00000103698 ENSMUST00000192578 Gm17877 processed_pseudogene Interval_95041 chr2 103407024 103407217 + 0 NA Intergenic Intergenic -4568 ENSMUSG00000027186.15 ENSMUSG00000027186 ENSMUST00000152055 Elf5 protein_coding Interval_165045 chr9 44124122 44124939 + 0 NA exon (ENSMUSG00000097617.2, exon 2 of 2) antisense-exon (ENSMUSG00000097617.2, exon 2 of 2) 6408 ENSMUSG00000097467.2 ENSMUSG00000097467 ENSMUST00000213646 Gm26737 antisense Interval_113712 chr4 57807770 57808052 + 0 NA intron (ENSMUSG00000038729.24, intron 1 of 1) protein_coding-intron (ENSMUSG00000038729.24, intron 2 of 2) -13139 ENSMUSG00000038729.24 ENSMUSG00000038729 ENSMUST00000102902 Pakap protein_coding Interval_68582 chr16 79236921 79237392 + 0 NA Intergenic Intergenic -146059 ENSMUSG00000022857.13 ENSMUSG00000022857 ENSMUST00000060402 Tmprss15 protein_coding Interval_102170 chr3 19127413 19127614 + 0 NA Intergenic Intergenic 16386 ENSMUSG00000103135.1 ENSMUSG00000103135 ENSMUST00000193065 Gm37979 TEC Interval_123230 chr5 30774511 30775521 + 0 NA intron (ENSMUSG00000029168.14, intron 2 of 12) protein_coding-intron (ENSMUSG00000029168.14, intron 2 of 12) -13174 ENSMUSG00000029168.14 ENSMUSG00000029168 ENSMUST00000138625 Dpysl5 protein_coding Interval_72546 chr17 30617782 30618182 + 0 NA intron (ENSMUSG00000024026.13, intron 1 of 8) protein_coding-intron (ENSMUSG00000024026.13, intron 1 of 7) -5413 ENSMUSG00000024026.13 ENSMUSG00000024026 ENSMUST00000237063 Glo1 protein_coding Interval_85145 chr19 23159452 23160030 + 0 NA intron (ENSMUSG00000033863.2, intron 1 of 1) protein_coding-intron (ENSMUSG00000033863.2, intron 1 of 1) 10310 ENSMUSG00000080626.1 ENSMUSG00000080626 ENSMUST00000116976 Mir1192 miRNA Interval_81583 chr18 61827805 61828318 + 0 NA intron (ENSMUSG00000032735.15, intron 8 of 23) protein_coding-intron (ENSMUSG00000032735.15, intron 7 of 22) -41450 ENSMUSG00000033032.15 ENSMUSG00000033032 ENSMUST00000147278 Afap1l1 protein_coding Interval_117705 chr4 125664160 125665266 + 0 NA intron (ENSMUSG00000001985.9, intron 9 of 15) protein_coding-intron (ENSMUSG00000001985.9, intron 9 of 15) 159964 ENSMUSG00000094403.1 ENSMUSG00000094403 ENSMUST00000102081 Mir692-2 miRNA Interval_102112 chr3 17797997 17798661 + 0 NA exon (ENSMUSG00000100252.6, exon 1 of 1) lincRNA-exon (ENSMUSG00000100252.6, exon 1 of 1) 2667 ENSMUSG00000093073.1 ENSMUSG00000093073 ENSMUST00000175332 Mir124a-2 miRNA Interval_145359 chr7 34218056 34219140 + 0 NA intron (ENSMUSG00000036427.5, intron 7 of 8) protein_coding-intron (ENSMUSG00000036427.5, intron 7 of 17) 11665 ENSMUSG00000036427.5 ENSMUSG00000036427 ENSMUST00000138773 Gpi1 protein_coding Interval_151003 chr7 117566063 117566261 + 0 NA intron (ENSMUSG00000030657.11, intron 3 of 6) protein_coding-intron (ENSMUSG00000030657.11, intron 3 of 11) 90670 ENSMUSG00000030657.11 ENSMUSG00000030657 ENSMUST00000161889 Xylt1 protein_coding Interval_141899 chr6 135218981 135220080 + 0 NA intron (ENSMUSG00000030207.15, intron 5 of 13) protein_coding-intron (ENSMUSG00000030207.15, intron 5 of 12) -12071 ENSMUSG00000030207.15 ENSMUSG00000030207 ENSMUST00000151951 Fam234b protein_coding Interval_155613 chr8 35177416 35177640 + 0 NA Intergenic Intergenic 6358 ENSMUSG00000110314.1 ENSMUSG00000110314 ENSMUST00000209412 Gm45625 lincRNA Interval_74222 chr17 47541820 47543129 + 0 NA intron (ENSMUSG00000034165.16, intron 1 of 6) protein_coding-intron (ENSMUSG00000034165.16, intron 1 of 6) -40202 ENSMUSG00000023980.7 ENSMUSG00000023980 ENSMUST00000233675 Taf8 protein_coding Interval_108996 chr3 134259466 134259798 + 0 NA TTS (ENSMUSG00000044365.15) protein_coding-TTS (ENSMUSG00000044365.15) 12878 ENSMUSG00000104779.1 ENSMUSG00000104779 ENSMUST00000198755 Gm43559 processed_pseudogene Interval_100993 chr2 174008182 174009163 + 0 NA Intergenic Intergenic -23981 ENSMUSG00000081700.1 ENSMUSG00000081700 ENSMUST00000120437 Atp5k-ps2 processed_pseudogene Interval_55667 chr14 98621011 98621589 + 0 NA Intergenic Intergenic -2890 ENSMUSG00000096444.1 ENSMUSG00000096444 ENSMUST00000180098 Gm26139 snRNA Interval_137760 chr6 82181259 82181666 + 0 NA Intergenic Intergenic -60712 ENSMUSG00000108224.1 ENSMUSG00000108224 ENSMUST00000204563 Gm31861 processed_pseudogene Interval_38213 chr12 76389656 76389994 + 0 NA exon (ENSMUSG00000033454.6, exon 2 of 2) protein_coding-exon (ENSMUSG00000033454.6, exon 2 of 2) 14157 ENSMUSG00000097323.2 ENSMUSG00000097323 ENSMUST00000180709 4930426I24Rik lincRNA Interval_112645 chr4 43761530 43761981 + 0 NA Intergenic Intergenic 6022 ENSMUSG00000083417.1 ENSMUSG00000083417 ENSMUST00000120783 Olfr269-ps1 unprocessed_pseudogene Interval_4466 chr1 74375634 74375818 + 0 NA promoter-TSS (ENSMUSG00000026177.11) protein_coding-promoter-TSS (ENSMUSG00000026177.11) 531 ENSMUSG00000026177.11 ENSMUSG00000026177 ENSMUST00000134189 Slc11a1 protein_coding Interval_167692 chr9 72060723 72061560 + 0 NA exon (ENSMUSG00000098915.1, exon 1 of 1) processed_pseudogene-exon (ENSMUSG00000098915.1, exon 1 of 1) 204 ENSMUSG00000098915.1 ENSMUSG00000098915 ENSMUST00000184247 Rpl15-ps2 processed_pseudogene Interval_168156 chr9 77609907 77610095 + 0 NA Intergenic Intergenic -26499 ENSMUSG00000044938.8 ENSMUSG00000044938 ENSMUST00000057781 Klhl31 protein_coding Interval_42722 chr13 18580913 18581618 + 0 NA Intergenic Intergenic 64084 ENSMUSG00000114118.1 ENSMUSG00000114118 ENSMUST00000221183 Gm48829 lincRNA Interval_134082 chr6 19007730 19008297 + 0 NA Intergenic Intergenic -38824 ENSMUSG00000084650.1 ENSMUSG00000084650 ENSMUST00000122701 Gm22718 misc_RNA Interval_143465 chr7 7004940 7005955 + 0 NA Intergenic Intergenic 10062 ENSMUSG00000070837.5 ENSMUSG00000070837 ENSMUST00000207660 Aurkc protein_coding Interval_107953 chr3 117359695 117360758 + 0 NA promoter-TSS (ENSMUSG00000044667.12) protein_coding-promoter-TSS (ENSMUSG00000044667.12) 22 ENSMUSG00000044667.12 ENSMUSG00000044667 ENSMUST00000197743 Plppr4 protein_coding Interval_132778 chr5 147818787 147820408 + 0 NA Intergenic Intergenic -2648 ENSMUSG00000107065.1 ENSMUSG00000107065 ENSMUST00000202661 Gm43155 processed_pseudogene Interval_158672 chr8 85070479 85072596 + 0 NA promoter-TSS (ENSMUSG00000060038.14) protein_coding-promoter-TSS (ENSMUSG00000060038.14) -1521 ENSMUSG00000060038.14 ENSMUSG00000060038 ENSMUST00000132356 Dhps protein_coding Interval_96318 chr2 121579180 121579967 + 0 NA intron (ENSMUSG00000027238.17, intron 4 of 14) protein_coding-intron (ENSMUSG00000027238.17, intron 4 of 13) -28222 ENSMUSG00000027238.17 ENSMUSG00000027238 ENSMUST00000153704 Frmd5 protein_coding Interval_98928 chr2 156077678 156077944 + 0 NA TTS (ENSMUSG00000074643.12) protein_coding-TTS (ENSMUSG00000074643.12) -1532 ENSMUSG00000074643.12 ENSMUSG00000074643 ENSMUST00000184152 Cpne1 protein_coding Interval_42200 chr13 9817258 9817791 + 0 NA Intergenic Intergenic -2987 ENSMUSG00000113754.1 ENSMUSG00000113754 ENSMUST00000223507 Gm47401 processed_pseudogene Interval_112709 chr4 44292243 44293577 + 0 NA Intergenic Intergenic -10658 ENSMUSG00000035683.13 ENSMUSG00000035683 ENSMUST00000137759 Melk protein_coding Interval_140108 chr6 114270404 114270678 + 0 NA Intergenic Intergenic -12249 ENSMUSG00000030310.10 ENSMUSG00000030310 ENSMUST00000204540 Slc6a1 protein_coding Interval_69929 chr17 3267831 3268184 + 0 NA intron (ENSMUSG00000116858.1, intron 1 of 3) lincRNA-intron (ENSMUSG00000116858.1, intron 1 of 3) 15200 ENSMUSG00000116874.1 ENSMUSG00000116874 ENSMUST00000231652 Gm34035 lincRNA Interval_127449 chr5 104025112 104025473 + 0 NA Intergenic Intergenic -3454 ENSMUSG00000029311.16 ENSMUSG00000029311 ENSMUST00000119025 Hsd17b11 protein_coding Interval_132514 chr5 145657696 145658073 + 0 NA Intergenic Intergenic -23891 ENSMUSG00000106040.1 ENSMUSG00000106040 ENSMUST00000196626 Cyp3a63-ps unprocessed_pseudogene Interval_22058 chr11 6046913 6047160 + 0 NA intron (ENSMUSG00000057897.14, intron 1 of 5) protein_coding-intron (ENSMUSG00000057897.14, intron 1 of 18) -62898 ENSMUSG00000057897.14 ENSMUSG00000057897 ENSMUST00000129098 Camk2b protein_coding Interval_91076 chr2 34836530 34836898 + 0 NA intron (ENSMUSG00000107167.3, intron 1 of 2) protein_coding-intron (ENSMUSG00000107167.3, intron 1 of 2) 3707 ENSMUSG00000107167.3 ENSMUSG00000107167 ENSMUST00000201786 Gm34653 protein_coding Interval_100055 chr2 166775456 166777212 + 0 NA Intergenic Intergenic 7589 ENSMUSG00000088063.1 ENSMUSG00000088063 ENSMUST00000157438 Gm24477 snRNA Interval_170910 chr9 111957621 111958064 + 0 NA Intergenic Intergenic -39176 ENSMUSG00000111054.1 ENSMUSG00000111054 ENSMUST00000215688 4930545L08Rik lincRNA Interval_59026 chr15 41830587 41831058 + 0 NA promoter-TSS (ENSMUSG00000022307.16) protein_coding-promoter-TSS (ENSMUSG00000022307.16) -171 ENSMUSG00000022307.16 ENSMUSG00000022307 ENSMUST00000230126 Oxr1 protein_coding Interval_10070 chr1 165601840 165602610 + 0 NA intron (ENSMUSG00000026566.15, intron 4 of 5) protein_coding-intron (ENSMUSG00000026566.15, intron 4 of 4) 6304 ENSMUSG00000026566.15 ENSMUSG00000026566 ENSMUST00000193172 Mpzl1 protein_coding Interval_60079 chr15 64661434 64662385 + 0 NA Intergenic Intergenic -28401 ENSMUSG00000115328.1 ENSMUSG00000115328 ENSMUST00000227641 Gm30691 lincRNA Interval_141910 chr6 135287211 135287889 + 0 NA Intergenic Intergenic -1809 ENSMUSG00000108276.1 ENSMUSG00000108276 ENSMUST00000203686 Gm36640 antisense Interval_8396 chr1 138822965 138823179 + 0 NA Intergenic Intergenic 19382 ENSMUSG00000019230.14 ENSMUSG00000019230 ENSMUST00000194557 Lhx9 protein_coding Interval_41133 chr12 111376912 111378465 + 0 NA promoter-TSS (ENSMUSG00000021279.5) protein_coding-promoter-TSS (ENSMUSG00000021279.5) -29121 ENSMUSG00000087075.2 ENSMUSG00000087075 ENSMUST00000150384 Lbhd2 protein_coding Interval_104398 chr3 65268514 65268776 + 0 NA intron (ENSMUSG00000027827.17, intron 2 of 13) protein_coding-intron (ENSMUSG00000027827.17, intron 2 of 13) 34040 ENSMUSG00000104093.1 ENSMUSG00000104093 ENSMUST00000195489 A330015K06Rik antisense Interval_82470 chr18 74274385 74276657 + 0 NA TTS (ENSMUSG00000024561.11) protein_coding-TTS (ENSMUSG00000024561.11) 7346 ENSMUSG00000024561.11 ENSMUSG00000024561 ENSMUST00000237568 Mbd1 protein_coding Interval_70416 chr17 9976198 9977560 + 0 NA Intergenic Intergenic 29042 ENSMUSG00000117206.1 ENSMUSG00000117206 ENSMUST00000233132 Gm49809 processed_pseudogene Interval_3429 chr1 58290064 58290588 + 0 NA intron (ENSMUSG00000079554.2, intron 7 of 35) protein_coding-intron (ENSMUSG00000079554.2, intron 7 of 35) 12000 ENSMUSG00000079554.2 ENSMUSG00000079554 ENSMUST00000114366 Aox2 protein_coding Interval_167478 chr9 69747858 69749181 + 0 NA Intergenic Intergenic 12421 ENSMUSG00000059246.4 ENSMUSG00000059246 ENSMUST00000071281 Foxb1 protein_coding Interval_62798 chr15 97060730 97061059 + 0 NA Intergenic Intergenic -40943 ENSMUSG00000022464.14 ENSMUSG00000022464 ENSMUST00000230907 Slc38a4 protein_coding Interval_89021 chr2 14627417 14627890 + 0 NA promoter-TSS (ENSMUSG00000070271.7) processed_pseudogene-promoter-TSS (ENSMUSG00000070271.7) -332 ENSMUSG00000070271.7 ENSMUSG00000070271 ENSMUST00000117485 Gm13268 processed_pseudogene Interval_14507 chr10 34472934 34473763 + 0 NA Intergenic Intergenic -10184 ENSMUSG00000019779.15 ENSMUSG00000019779 ENSMUST00000215594 Frk protein_coding Interval_71019 chr17 17230592 17230925 + 0 NA Intergenic Intergenic -31592 ENSMUSG00000116802.1 ENSMUSG00000116802 ENSMUST00000231376 Gm5165 lincRNA Interval_113489 chr4 55317806 55318622 + 0 NA Intergenic Intergenic -18369 ENSMUSG00000077403.2 ENSMUSG00000077403 ENSMUST00000104215 Gm25419 snoRNA Interval_86934 chr19 44996528 44996938 + 0 NA exon (ENSMUSG00000025207.16, exon 6 of 15) protein_coding-exon (ENSMUSG00000025207.16, exon 6 of 15) 7472 ENSMUSG00000025207.16 ENSMUSG00000025207 ENSMUST00000179305 Sema4g protein_coding Interval_122346 chr5 21586761 21588633 + 0 NA intron (ENSMUSG00000048520.16, intron 7 of 18) protein_coding-intron (ENSMUSG00000048520.16, intron 7 of 19) -11043 ENSMUSG00000106135.1 ENSMUSG00000106135 ENSMUST00000197353 Gm6543 processed_pseudogene Interval_87464 chr19 52435066 52435453 + 0 NA Intergenic Intergenic 98094 ENSMUSG00000118114.1 ENSMUSG00000118114 ENSMUST00000236031 Gm50332 lincRNA Interval_117402 chr4 123510373 123510972 + 0 NA exon (ENSMUSG00000028649.21, exon 13 of 93) protein_coding-exon (ENSMUSG00000028649.21, exon 13 of 93) 20441 ENSMUSG00000089588.1 ENSMUSG00000089588 ENSMUST00000158963 Gm23548 misc_RNA Interval_38802 chr12 82454221 82455162 + 0 NA Intergenic Intergenic 41846 ENSMUSG00000094374.2 ENSMUSG00000094374 ENSMUST00000179295 Gm5435 processed_pseudogene Interval_101431 chr2 181346454 181346905 + 0 NA intron (ENSMUSG00000038685.18, intron 6 of 7) protein_coding-intron (ENSMUSG00000038685.18, intron 14 of 32) -10243 ENSMUSG00000118593.1 ENSMUSG00000118593 ENSMUST00000239235 AL928965.1 unitary_pseudogene Interval_168069 chr9 75846763 75846948 + 0 NA intron (ENSMUSG00000032179.7, intron 3 of 6) protein_coding-intron (ENSMUSG00000032179.7, intron 3 of 6) 18833 ENSMUSG00000032179.7 ENSMUSG00000032179 ENSMUST00000137213 Bmp5 protein_coding Interval_81124 chr18 54358873 54359682 + 0 NA Intergenic Intergenic -63018 ENSMUSG00000096982.2 ENSMUSG00000096982 ENSMUST00000181269 Redrum lincRNA Interval_128673 chr5 114638957 114640095 + 0 NA intron (ENSMUSG00000014158.12, intron 2 of 3) protein_coding-intron (ENSMUSG00000014158.12, intron 3 of 15) 5373 ENSMUSG00000014158.12 ENSMUSG00000014158 ENSMUST00000212469 Trpv4 protein_coding Interval_39215 chr12 85902559 85902775 + 0 NA intron (ENSMUSG00000012609.19, intron 17 of 31) protein_coding-intron (ENSMUSG00000012609.19, intron 17 of 33) -59334 ENSMUSG00000012609.19 ENSMUSG00000012609 ENSMUST00000220906 Ttll5 protein_coding Interval_164767 chr9 41558661 41559754 + 0 NA promoter-TSS (ENSMUSG00000111854.1) lincRNA-promoter-TSS (ENSMUSG00000111854.1) 52 ENSMUSG00000111854.1 ENSMUSG00000111854 ENSMUST00000213560 Gm48740 lincRNA Interval_102345 chr3 22066797 22067070 + 0 NA Intergenic Intergenic 9209 ENSMUSG00000106019.1 ENSMUSG00000106019 ENSMUST00000199072 Gm43672 lincRNA Interval_33320 chr11 115904322 115905346 + 0 NA intron (ENSMUSG00000048442.15, intron 2 of 3) protein_coding-intron (ENSMUSG00000020752.11, intron 7 of 18) 4868 ENSMUSG00000048442.15 ENSMUSG00000048442 ENSMUST00000131566 Smim5 protein_coding Interval_44650 chr13 46925936 46926185 + 0 NA intron (ENSMUSG00000021375.11, intron 2 of 2) protein_coding-intron (ENSMUSG00000021375.11, intron 2 of 37) 19633 ENSMUSG00000114449.1 ENSMUSG00000114449 ENSMUST00000224563 Gm48325 processed_pseudogene Interval_98093 chr2 147967873 147969462 + 0 NA intron (ENSMUSG00000086141.7, intron 2 of 6) lincRNA-intron (ENSMUSG00000086141.7, intron 2 of 6) 71536 ENSMUSG00000086141.7 ENSMUSG00000086141 ENSMUST00000132070 9030622O22Rik lincRNA Interval_33363 chr11 116127109 116127594 + 0 NA promoter-TSS (ENSMUSG00000020773.11) protein_coding-promoter-TSS (ENSMUSG00000020773.11) 3777 ENSMUSG00000054517.9 ENSMUSG00000054517 ENSMUST00000154061 Trim65 protein_coding Interval_18857 chr10 91354865 91355053 + 0 NA Intergenic Intergenic 44614 ENSMUSG00000111525.1 ENSMUSG00000111525 ENSMUST00000214371 Gm47082 lincRNA Interval_63150 chr15 99399286 99400077 + 0 NA exon (ENSMUSG00000023010.15, exon 2 of 11) protein_coding-exon (ENSMUSG00000023010.15, exon 2 of 11) -7586 ENSMUSG00000023010.15 ENSMUSG00000023010 ENSMUST00000231173 Tmbim6 protein_coding Interval_27207 chr11 64110588 64111707 + 0 NA Intergenic Intergenic 31565 ENSMUSG00000087497.7 ENSMUSG00000087497 ENSMUST00000146333 2810001G20Rik antisense Interval_3167 chr1 54381213 54381966 + 0 NA Intergenic Intergenic 42465 ENSMUSG00000041303.7 ENSMUSG00000041303 ENSMUST00000189906 Gtf3c3 protein_coding Interval_54770 chr14 74921273 74922415 + 0 NA intron (ENSMUSG00000068015.8, intron 1 of 18) protein_coding-intron (ENSMUSG00000068015.8, intron 1 of 19) -4601 ENSMUSG00000115002.1 ENSMUSG00000115002 ENSMUST00000227773 Gm10847 antisense Interval_54294 chr14 67231967 67232351 + 0 NA TTS (ENSMUSG00000093744.1) lincRNA-TTS (ENSMUSG00000093744.1) 970 ENSMUSG00000093744.1 ENSMUSG00000093744 ENSMUST00000175861 Gm20675 lincRNA Interval_39641 chr12 91749609 91749947 + 0 NA intron (ENSMUSG00000020961.15, intron 1 of 6) protein_coding-intron (ENSMUSG00000020961.15, intron 1 of 6) 21392 ENSMUSG00000020961.15 ENSMUSG00000020961 ENSMUST00000166008 Ston2 protein_coding Interval_1712 chr1 32073264 32075217 + 0 NA Intergenic Intergenic -98489 ENSMUSG00000026058.11 ENSMUSG00000026058 ENSMUST00000186984 Khdrbs2 protein_coding Interval_138130 chr6 85362937 85364000 + 0 NA intron (ENSMUSG00000051343.11, intron 1 of 5) protein_coding-intron (ENSMUSG00000051343.11, intron 1 of 4) -21831 ENSMUSG00000051343.11 ENSMUSG00000051343 ENSMUST00000204504 Rab11fip5 protein_coding Interval_123604 chr5 33730678 33732270 + 0 NA exon (ENSMUSG00000054252.18, exon 6 of 7) protein_coding-exon (ENSMUSG00000054252.18, exon 6 of 7) -1778 ENSMUSG00000054252.18 ENSMUSG00000054252 ENSMUST00000142860 Fgfr3 protein_coding Interval_101953 chr3 12999130 12999356 + 0 NA Intergenic Intergenic 23884 ENSMUSG00000103735.1 ENSMUSG00000103735 ENSMUST00000195564 Gm38317 processed_pseudogene Interval_153636 chr8 4165502 4167022 + 0 NA promoter-TSS (ENSMUSG00000011832.16) protein_coding-promoter-TSS (ENSMUSG00000011832.16) -305 ENSMUSG00000011832.16 ENSMUSG00000011832 ENSMUST00000176645 Evi5l protein_coding Interval_80051 chr18 36967531 36968242 + 0 NA exon (ENSMUSG00000103384.1, exon 1 of 2) antisense-exon (ENSMUSG00000103384.1, exon 1 of 2) 236 ENSMUSG00000103707.5 ENSMUSG00000103707 ENSMUST00000194751 Pcdha6 protein_coding Interval_10361 chr1 169956325 169956913 + 0 NA intron (ENSMUSG00000026675.12, intron 4 of 5) protein_coding-intron (ENSMUSG00000026675.12, intron 7 of 8) 9104 ENSMUSG00000026675.12 ENSMUSG00000026675 ENSMUST00000123230 Hsd17b7 protein_coding Interval_16302 chr10 62062675 62063159 + 0 NA Intergenic Intergenic -8206 ENSMUSG00000046687.6 ENSMUSG00000046687 ENSMUST00000053865 Gm5424 processed_pseudogene Interval_172536 chrX 35906932 35907371 + 0 NA intron (ENSMUSG00000031093.14, intron 1 of 52) protein_coding-intron (ENSMUSG00000031093.14, intron 1 of 52) -67737 ENSMUSG00000031093.14 ENSMUSG00000031093 ENSMUST00000115264 Dock11 protein_coding Interval_103497 chr3 45117158 45118307 + 0 NA Intergenic Intergenic -42963 ENSMUSG00000099285.1 ENSMUSG00000099285 ENSMUST00000184721 Gm27989 miRNA Interval_160716 chr8 111774054 111775028 + 0 NA intron (ENSMUSG00000031954.6, intron 6 of 6) protein_coding-intron (ENSMUSG00000031954.6, intron 6 of 6) -42405 ENSMUSG00000031955.10 ENSMUSG00000031955 ENSMUST00000212147 Bcar1 protein_coding Interval_30670 chr11 95791657 95792606 + 0 NA intron (ENSMUSG00000075595.9, intron 5 of 6) protein_coding-intron (ENSMUSG00000075595.9, intron 5 of 6) 30640 ENSMUSG00000082981.1 ENSMUSG00000082981 ENSMUST00000120170 Polr2k-ps processed_pseudogene Interval_167712 chr9 72237695 72237967 + 0 NA Intergenic Intergenic -7525 ENSMUSG00000099190.1 ENSMUSG00000099190 ENSMUST00000184383 Gm27188 lincRNA Interval_18125 chr10 82829678 82830342 + 0 NA Intergenic Intergenic 17887 ENSMUSG00000056821.13 ENSMUSG00000056821 ENSMUST00000076984 1700028I16Rik lincRNA Interval_111651 chr4 25247716 25248049 + 0 NA TTS (ENSMUSG00000040359.14) protein_coding-TTS (ENSMUSG00000040359.14) -5006 ENSMUSG00000028259.13 ENSMUSG00000028259 ENSMUST00000108204 Fhl5 protein_coding Interval_72127 chr17 28195872 28196111 + 0 NA intron (ENSMUSG00000024220.14, intron 4 of 12) protein_coding-intron (ENSMUSG00000024220.14, intron 5 of 14) -11835 ENSMUSG00000002257.8 ENSMUSG00000002257 ENSMUST00000233534 Def6 protein_coding Interval_99403 chr2 160655528 160657983 + 0 NA intron (ENSMUSG00000070544.6, intron 2 of 20) protein_coding-intron (ENSMUSG00000070544.6, intron 2 of 20) -28914 ENSMUSG00000070544.6 ENSMUSG00000070544 ENSMUST00000150039 Top1 protein_coding Interval_162858 chr9 10467799 10468658 + 0 NA intron (ENSMUSG00000039488.15, intron 2 of 20) protein_coding-intron (ENSMUSG00000039488.15, intron 2 of 24) -7707 ENSMUSG00000111648.1 ENSMUSG00000111648 ENSMUST00000217614 Gm46103 processed_pseudogene Interval_83226 chr18 82871158 82872594 + 0 NA Intergenic Intergenic 15982 ENSMUSG00000097738.2 ENSMUSG00000097738 ENSMUST00000180631 4930445N18Rik lincRNA Interval_133606 chr6 7543628 7543926 + 0 NA Intergenic Intergenic 2823 ENSMUSG00000107493.1 ENSMUSG00000107493 ENSMUST00000204531 Gm44048 processed_pseudogene Interval_156199 chr8 45918529 45918780 + 0 NA intron (ENSMUSG00000031636.7, intron 7 of 7) protein_coding-intron (ENSMUSG00000031636.7, intron 6 of 6) -2218 ENSMUSG00000110071.1 ENSMUSG00000110071 ENSMUST00000210432 Gm45512 TEC Interval_24033 chr11 29669081 29671081 + 0 NA Intergenic Intergenic 19754 ENSMUSG00000083917.1 ENSMUSG00000083917 ENSMUST00000120906 Gm12093 processed_pseudogene Interval_94000 chr2 80604290 80604710 + 0 NA Intergenic Intergenic 1767 ENSMUSG00000083284.1 ENSMUSG00000083284 ENSMUST00000121557 Gm13688 processed_pseudogene Interval_84840 chr19 17364748 17365236 + 0 NA intron (ENSMUSG00000038843.18, intron 1 of 2) protein_coding-intron (ENSMUSG00000038843.18, intron 1 of 2) 7852 ENSMUSG00000038843.18 ENSMUSG00000038843 ENSMUST00000174137 Gcnt1 protein_coding Interval_15889 chr10 58878555 58879786 + 0 NA intron (ENSMUSG00000037990.18, intron 1 of 9) protein_coding-intron (ENSMUSG00000037990.18, intron 1 of 2) 65712 ENSMUSG00000037990.18 ENSMUSG00000037990 ENSMUST00000152924 Sh3rf3 protein_coding Interval_104491 chr3 66669757 66670383 + 0 NA Intergenic Intergenic -106519 ENSMUSG00000103600.1 ENSMUSG00000103600 ENSMUST00000193914 Gm17952 processed_pseudogene Interval_152868 chr7 138918792 138920001 + 0 NA Intergenic Intergenic 5008 ENSMUSG00000098199.1 ENSMUSG00000098199 ENSMUST00000183067 Gm9358 processed_pseudogene Interval_133231 chr5 150732478 150732672 + 0 NA intron (ENSMUSG00000034021.15, intron 7 of 34) protein_coding-intron (ENSMUSG00000034021.15, intron 7 of 34) -19518 ENSMUSG00000107048.1 ENSMUSG00000107048 ENSMUST00000200678 Gm43807 sense_intronic Interval_153771 chr8 8130768 8133258 + 0 NA intron (ENSMUSG00000109127.1, intron 3 of 5) lincRNA-intron (ENSMUSG00000109127.1, intron 3 of 5) 65347 ENSMUSG00000109566.1 ENSMUSG00000109566 ENSMUST00000207352 Gm31401 lincRNA Interval_79320 chr18 30443821 30444157 + 0 NA Intergenic Intergenic -14128 ENSMUSG00000117419.1 ENSMUSG00000117419 ENSMUST00000234371 Gm7930 unprocessed_pseudogene Interval_59194 chr15 47439472 47439888 + 0 NA Intergenic Intergenic 17765 ENSMUSG00000115534.1 ENSMUSG00000115534 ENSMUST00000227510 Gm7508 processed_pseudogene Interval_100148 chr2 167333350 167333608 + 0 NA intron (ENSMUSG00000017929.13, intron 1 of 8) protein_coding-intron (ENSMUSG00000017929.13, intron 1 of 8) -19624 ENSMUSG00000017929.13 ENSMUSG00000017929 ENSMUST00000133557 B4galt5 protein_coding Interval_76564 chr17 81146947 81148131 + 0 NA Intergenic Intergenic -82457 ENSMUSG00000024246.9 ENSMUSG00000024246 ENSMUST00000234801 Thumpd2 protein_coding Interval_38224 chr12 76465878 76466554 + 0 NA Intergenic Intergenic 16518 ENSMUSG00000073000.3 ENSMUSG00000073000 ENSMUST00000220043 Gm10451 lincRNA Interval_95461 chr2 109809418 109809810 + 0 NA Intergenic Intergenic -17080 ENSMUSG00000083915.1 ENSMUSG00000083915 ENSMUST00000120873 Gm13932 processed_pseudogene Interval_41970 chr13 5779385 5779632 + 0 NA Intergenic Intergenic 42350 ENSMUSG00000080562.2 ENSMUSG00000080562 ENSMUST00000116912 Gm26043 miRNA Interval_140533 chr6 119347862 119348951 + 0 NA intron (ENSMUSG00000041460.16, intron 35 of 37) protein_coding-intron (ENSMUSG00000041460.16, intron 35 of 37) -19202 ENSMUSG00000055003.14 ENSMUSG00000055003 ENSMUST00000124192 Lrtm2 protein_coding Interval_131514 chr5 137658820 137660328 + 0 NA intron (ENSMUSG00000029722.15, intron 2 of 2) protein_coding-intron (ENSMUSG00000029722.15, intron 6 of 11) 4742 ENSMUSG00000029722.15 ENSMUSG00000029722 ENSMUST00000138604 Agfg2 protein_coding Interval_163760 chr9 25377975 25378832 + 0 NA Intergenic Intergenic 28905 ENSMUSG00000111558.1 ENSMUSG00000111558 ENSMUST00000216734 Gm18891 processed_pseudogene Interval_35205 chr12 18135370 18136585 + 0 NA promoter-TSS (ENSMUSG00000113199.1) unprocessed_pseudogene-promoter-TSS (ENSMUSG00000113199.1) -209 ENSMUSG00000113199.1 ENSMUSG00000113199 ENSMUST00000222777 Gm9229 unprocessed_pseudogene Interval_130072 chr5 124084493 124085361 + 0 NA intron (ENSMUSG00000029408.13, intron 1 of 8) protein_coding-intron (ENSMUSG00000029408.13, intron 2 of 11) -5796 ENSMUSG00000029408.13 ENSMUSG00000029408 ENSMUST00000126970 Abcb9 protein_coding Interval_66861 chr16 38171538 38171705 + 0 NA intron (ENSMUSG00000022812.14, intron 3 of 5) protein_coding-intron (ENSMUSG00000022812.14, intron 3 of 10) 13613 ENSMUSG00000105863.1 ENSMUSG00000105863 ENSMUST00000198387 Gm25617 snoRNA Interval_91084 chr2 34903054 34903334 + 0 NA exon (ENSMUSG00000026873.9, exon 9 of 15) protein_coding-exon (ENSMUSG00000026873.9, exon 9 of 15) -9677 ENSMUSG00000086001.1 ENSMUSG00000086001 ENSMUST00000143469 Gm13448 processed_transcript Interval_40935 chr12 110009172 110009729 + 0 NA intron (ENSMUSG00000113063.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000113063.1, intron 1 of 2) 14423 ENSMUSG00000113063.1 ENSMUSG00000113063 ENSMUST00000222974 Gm34667 lincRNA Interval_62632 chr15 95819473 95820841 + 0 NA intron (ENSMUSG00000064210.7, intron 1 of 4) protein_coding-intron (ENSMUSG00000064210.7, intron 1 of 19) 9915 ENSMUSG00000078648.3 ENSMUSG00000078648 ENSMUST00000168960 Gm17546 antisense Interval_131212 chr5 135844785 135846310 + 0 NA promoter-TSS (ENSMUSG00000085026.1) antisense-promoter-TSS (ENSMUSG00000085026.1) -601 ENSMUSG00000085026.1 ENSMUSG00000085026 ENSMUST00000131896 Srrm3os antisense Interval_551 chr1 7218854 7219079 + 0 NA Intergenic Intergenic -29047 ENSMUSG00000103709.1 ENSMUSG00000103709 ENSMUST00000195269 Nras-ps2 processed_pseudogene Interval_45944 chr13 59519641 59520234 + 0 NA intron (ENSMUSG00000021557.15, intron 8 of 17) protein_coding-intron (ENSMUSG00000021557.15, intron 8 of 25) -37629 ENSMUSG00000114526.1 ENSMUSG00000114526 ENSMUST00000225984 A930015P04Rik TEC Interval_47944 chr13 94545775 94546414 + 0 NA intron (ENSMUSG00000021686.6, intron 10 of 11) protein_coding-intron (ENSMUSG00000021686.6, intron 25 of 26) 28932 ENSMUSG00000084423.1 ENSMUSG00000084423 ENSMUST00000122474 Gm25109 miRNA Interval_20499 chr10 117979010 117979541 + 0 NA Intergenic Intergenic -25663 ENSMUSG00000102896.1 ENSMUSG00000102896 ENSMUST00000193027 Gm37852 TEC Interval_33585 chr11 117370312 117370640 + 0 NA Intergenic Intergenic 38048 ENSMUSG00000059248.13 ENSMUSG00000059248 ENSMUST00000129387 Septin9 protein_coding Interval_41332 chr12 112897801 112898642 + 0 NA Intergenic Intergenic 12147 ENSMUSG00000002799.6 ENSMUSG00000002799 ENSMUST00000222402 Jag2 protein_coding Interval_54028 chr14 64610641 64611024 + 0 NA Intergenic Intergenic 19647 ENSMUSG00000092972.1 ENSMUSG00000092972 ENSMUST00000175231 Mir3078 miRNA Interval_149110 chr7 93505868 93506274 + 0 NA Intergenic Intergenic -16989 ENSMUSG00000109195.1 ENSMUSG00000109195 ENSMUST00000207537 Gm45038 processed_pseudogene Interval_134820 chr6 31845939 31846496 + 0 NA intron (ENSMUSG00000087379.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000087379.1, intron 1 of 2) 59542 ENSMUSG00000087379.1 ENSMUSG00000087379 ENSMUST00000153328 Gm13849 lincRNA Interval_150339 chr7 109715787 109715986 + 0 NA TTS (ENSMUSG00000031022.15) protein_coding-TTS (ENSMUSG00000031022.15) 5130 ENSMUSG00000031022.15 ENSMUSG00000031022 ENSMUST00000145211 BC051019 protein_coding Interval_27495 chr11 68238616 68239107 + 0 NA intron (ENSMUSG00000020902.12, intron 6 of 7) protein_coding-intron (ENSMUSG00000020902.12, intron 5 of 6) 17969 ENSMUSG00000099174.1 ENSMUSG00000099174 ENSMUST00000183592 Mir6406 miRNA Interval_112598 chr4 43483325 43483750 + 0 NA promoter-TSS (ENSMUSG00000028460.6) protein_coding-promoter-TSS (ENSMUSG00000028460.6) -315 ENSMUSG00000028460.6 ENSMUSG00000028460 ENSMUST00000123526 Sit1 protein_coding Interval_100357 chr2 168622742 168623083 + 0 NA Intergenic Intergenic 17847 ENSMUSG00000105496.1 ENSMUSG00000105496 ENSMUST00000200215 Mir7004 miRNA Interval_134946 chr6 34013229 34013494 + 0 NA Intergenic Intergenic -16087 ENSMUSG00000056215.13 ENSMUSG00000056215 ENSMUST00000141078 Lrguk protein_coding Interval_6873 chr1 120258609 120259199 + 0 NA intron (ENSMUSG00000026389.16, intron 2 of 5) protein_coding-intron (ENSMUSG00000026389.16, intron 1 of 4) 6351 ENSMUSG00000026389.16 ENSMUSG00000026389 ENSMUST00000112643 Steap3 protein_coding Interval_35527 chr12 24498201 24499227 + 0 NA promoter-TSS (ENSMUSG00000059669.8) protein_coding-promoter-TSS (ENSMUSG00000059669.8) 85 ENSMUSG00000059669.8 ENSMUSG00000059669 ENSMUST00000221372 Taf1b protein_coding Interval_142847 chr6 146403077 146403736 + 0 NA intron (ENSMUSG00000030287.15, intron 9 of 13) protein_coding-intron (ENSMUSG00000030287.15, intron 10 of 56) 26989 ENSMUSG00000107743.1 ENSMUSG00000107743 ENSMUST00000204247 Gm44087 TEC Interval_173908 chrX 109052992 109053421 + 0 NA Intergenic Intergenic -29744 ENSMUSG00000064574.1 ENSMUSG00000064574 ENSMUST00000082640 Gm25797 snRNA Interval_18436 chr10 85935307 85937117 + 0 NA intron (ENSMUSG00000085111.3, intron 1 of 2) protein_coding-intron (ENSMUSG00000085111.3, intron 1 of 2) 8531 ENSMUSG00000085111.3 ENSMUSG00000085111 ENSMUST00000156605 Ascl4 protein_coding Interval_62905 chr15 97813245 97813458 + 0 NA intron (ENSMUSG00000022475.19, intron 1 of 21) protein_coding-intron (ENSMUSG00000022475.19, intron 1 of 24) 18143 ENSMUSG00000022475.19 ENSMUSG00000022475 ENSMUST00000134258 Hdac7 protein_coding Interval_54345 chr14 67831792 67832263 + 0 NA intron (ENSMUSG00000044447.5, intron 11 of 17) protein_coding-intron (ENSMUSG00000044447.5, intron 11 of 51) 27718 ENSMUSG00000098866.1 ENSMUSG00000098866 ENSMUST00000183732 Mir6539 miRNA Interval_155210 chr8 27579340 27579909 + 0 NA intron (ENSMUSG00000110333.1, intron 51 of 65) protein_coding-intron (ENSMUSG00000110333.1, intron 52 of 69) -24753 ENSMUSG00000074404.6 ENSMUSG00000074404 ENSMUST00000211230 Gm1698 lincRNA Interval_34154 chr11 120941009 120941209 + 0 NA Intergenic Intergenic -7972 ENSMUSG00000025161.16 ENSMUSG00000025161 ENSMUST00000134540 Slc16a3 protein_coding Interval_33085 chr11 114303659 114304265 + 0 NA Intergenic Intergenic 52119 ENSMUSG00000075431.6 ENSMUSG00000075431 ENSMUST00000130963 Gm11691 lincRNA Interval_83156 chr18 82377144 82377506 + 0 NA Intergenic Intergenic -15725 ENSMUSG00000118057.1 ENSMUSG00000118057 ENSMUST00000235445 B020010K11Rik lincRNA Interval_9976 chr1 164483762 164484844 + 0 NA Intergenic Intergenic -4757 ENSMUSG00000103226.1 ENSMUSG00000103226 ENSMUST00000194377 Gm37732 processed_pseudogene Interval_158157 chr8 79305760 79306498 + 0 NA TTS (ENSMUSG00000097174.2) bidirectional_promoter_lncRNA-TTS (ENSMUSG00000097174.2) 10761 ENSMUSG00000097174.2 ENSMUSG00000097174 ENSMUST00000209627 Gm4890 bidirectional_promoter_lncRNA Interval_39799 chr12 98530947 98532088 + 0 NA intron (ENSMUSG00000033854.10, intron 1 of 4) protein_coding-intron (ENSMUSG00000033854.10, intron 1 of 6) 545 ENSMUSG00000033854.10 ENSMUSG00000033854 ENSMUST00000221906 Kcnk10 protein_coding Interval_75417 chr17 66451316 66451726 + 0 NA exon (ENSMUSG00000117003.1, exon 1 of 1) bidirectional_promoter_lncRNA-exon (ENSMUSG00000117003.1, exon 1 of 1) 1667 ENSMUSG00000117003.1 ENSMUSG00000117003 ENSMUST00000233518 Gm49937 bidirectional_promoter_lncRNA Interval_77879 chr18 4990152 4990438 + 0 NA intron (ENSMUSG00000024236.18, intron 3 of 35) protein_coding-intron (ENSMUSG00000024236.18, intron 1 of 37) -44871 ENSMUSG00000024236.18 ENSMUSG00000024236 ENSMUST00000129543 Svil protein_coding Interval_83934 chr19 5704439 5706249 + 0 NA intron (ENSMUSG00000024936.8, intron 1 of 2) protein_coding-intron (ENSMUSG00000024936.8, intron 1 of 2) 373 ENSMUSG00000024936.8 ENSMUSG00000024936 ENSMUST00000235419 Kcnk7 protein_coding Interval_76941 chr17 85080437 85081703 + 0 NA exon (ENSMUSG00000024127.15, exon 4 of 14) protein_coding-exon (ENSMUSG00000024127.15, exon 4 of 14) -3596 ENSMUSG00000024127.15 ENSMUSG00000024127 ENSMUST00000234393 Prepl protein_coding Interval_26534 chr11 58602886 58603435 + 0 NA Intergenic Intergenic 8032 ENSMUSG00000056564.7 ENSMUSG00000056564 ENSMUST00000054683 Olfr324 protein_coding Interval_42730 chr13 18646518 18647356 + 0 NA Intergenic Intergenic -1588 ENSMUSG00000114118.1 ENSMUSG00000114118 ENSMUST00000221183 Gm48829 lincRNA Interval_122931 chr5 27460036 27460298 + 0 NA intron (ENSMUSG00000061576.15, intron 4 of 25) protein_coding-intron (ENSMUSG00000061576.15, intron 4 of 25) 41195 ENSMUSG00000048703.9 ENSMUSG00000048703 ENSMUST00000124535 Speer4b protein_coding Interval_55511 chr14 89715596 89715802 + 0 NA Intergenic Intergenic 8894 ENSMUSG00000077408.1 ENSMUSG00000077408 ENSMUST00000104220 Gm25415 snoRNA Interval_164150 chr9 31997017 31998130 + 0 NA intron (ENSMUSG00000111771.1, intron 1 of 3) lincRNA-intron (ENSMUSG00000111771.1, intron 1 of 3) 7887 ENSMUSG00000111771.1 ENSMUSG00000111771 ENSMUST00000216368 Gm47465 lincRNA Interval_172714 chrX 47436287 47436612 + 0 NA Intergenic Intergenic -35359 ENSMUSG00000083094.2 ENSMUSG00000083094 ENSMUST00000121923 Gm4908 processed_pseudogene Interval_54236 chr14 66778412 66778625 + 0 NA Intergenic Intergenic -5990 ENSMUSG00000057913.3 ENSMUSG00000057913 ENSMUST00000225384 Gm10032 lincRNA Interval_3850 chr1 63659571 63659985 + 0 NA intron (ENSMUSG00000069085.5, intron 9 of 14) protein_coding-intron (ENSMUSG00000069085.5, intron 9 of 14) -11690 ENSMUSG00000083066.1 ENSMUSG00000083066 ENSMUST00000120763 Gm12748 processed_pseudogene Interval_100345 chr2 168545698 168546814 + 0 NA intron (ENSMUSG00000027544.16, intron 3 of 6) protein_coding-intron (ENSMUSG00000027544.16, intron 3 of 6) 55399 ENSMUSG00000027544.16 ENSMUSG00000027544 ENSMUST00000138546 Nfatc2 protein_coding Interval_174748 chrX 165002768 165003948 + 0 NA TTS (ENSMUSG00000079600.2) protein_coding-TTS (ENSMUSG00000079600.2) 1471 ENSMUSG00000079600.2 ENSMUSG00000079600 ENSMUST00000114890 Gm17604 protein_coding Interval_60014 chr15 63923109 63925151 + 0 NA TTS (ENSMUSG00000100127.6) transcribed_unprocessed_pseudogene-TTS (ENSMUSG00000100127.6) 9682 ENSMUSG00000100127.6 ENSMUSG00000100127 ENSMUST00000188344 Gsdmcl-ps transcribed_unprocessed_pseudogene Interval_89468 chr2 20841262 20841610 + 0 NA Intergenic Intergenic 18360 ENSMUSG00000036591.16 ENSMUSG00000036591 ENSMUST00000173654 Arhgap21 protein_coding Interval_29229 chr11 81790275 81790493 + 0 NA intron (ENSMUSG00000020704.13, intron 1 of 9) protein_coding-intron (ENSMUSG00000020704.13, intron 1 of 9) -70289 ENSMUSG00000020703.3 ENSMUSG00000020703 ENSMUST00000021044 5530401A14Rik protein_coding Interval_37790 chr12 71994941 71995441 + 0 NA Intergenic Intergenic 54068 ENSMUSG00000114155.1 ENSMUSG00000114155 ENSMUST00000221336 Gm7986 processed_pseudogene Interval_18787 chr10 90771319 90772295 + 0 NA intron (ENSMUSG00000058589.14, intron 4 of 11) protein_coding-intron (ENSMUSG00000058589.14, intron 3 of 11) -20741 ENSMUSG00000112507.1 ENSMUSG00000112507 ENSMUST00000219326 Gm47589 processed_pseudogene Interval_93555 chr2 74123372 74123938 + 0 NA Intergenic Intergenic -6526 ENSMUSG00000099502.1 ENSMUSG00000099502 ENSMUST00000190918 Gm28640 lincRNA Interval_108818 chr3 131921303 131921807 + 0 NA intron (ENSMUSG00000105331.1, intron 1 of 3) lincRNA-intron (ENSMUSG00000105331.1, intron 1 of 3) 3296 ENSMUSG00000087877.1 ENSMUSG00000087877 ENSMUST00000157252 Gm26103 snRNA Interval_72834 chr17 32468503 32468941 + 0 NA intron (ENSMUSG00000061126.5, intron 3 of 13) protein_coding-intron (ENSMUSG00000061126.5, intron 1 of 11) 15999 ENSMUSG00000061126.5 ENSMUSG00000061126 ENSMUST00000235903 Cyp4f39 protein_coding Interval_131038 chr5 134704249 134704768 + 0 NA intron (ENSMUSG00000029675.12, intron 24 of 24) protein_coding-intron (ENSMUSG00000029675.12, intron 36 of 36) 24598 ENSMUSG00000029675.12 ENSMUSG00000029675 ENSMUST00000201399 Eln protein_coding Interval_72942 chr17 33684528 33685937 + 0 NA TTS (ENSMUSG00000079557.11) protein_coding-TTS (ENSMUSG00000079557.11) 169 ENSMUSG00000059208.15 ENSMUSG00000059208 ENSMUST00000127598 Hnrnpm protein_coding Interval_111844 chr4 31854043 31854379 + 0 NA Intergenic Intergenic -131456 ENSMUSG00000028284.13 ENSMUSG00000028284 ENSMUST00000131310 Map3k7 protein_coding Interval_10199 chr1 167069736 167070000 + 0 NA intron (ENSMUSG00000060568.14, intron 1 of 2) protein_coding-intron (ENSMUSG00000060568.14, intron 1 of 2) 68451 ENSMUSG00000060568.14 ENSMUSG00000060568 ENSMUST00000128373 Fam78b protein_coding Interval_67327 chr16 46317699 46318561 + 0 NA Intergenic Intergenic 98294 ENSMUSG00000095796.1 ENSMUSG00000095796 ENSMUST00000179464 Gm26297 snoRNA Interval_18966 chr10 93444244 93444774 + 0 NA Intergenic Intergenic 11402 ENSMUSG00000098679.1 ENSMUSG00000098679 ENSMUST00000183565 Mir7688 miRNA Interval_34016 chr11 120040550 120041187 + 0 NA intron (ENSMUSG00000025375.15, intron 1 of 13) protein_coding-intron (ENSMUSG00000025375.15, intron 1 of 13) 6299 ENSMUSG00000025375.15 ENSMUSG00000025375 ENSMUST00000134319 Aatk protein_coding Interval_96460 chr2 123869419 123869657 + 0 NA Intergenic Intergenic 260418 ENSMUSG00000085496.1 ENSMUSG00000085496 ENSMUST00000129584 4930517E11Rik lincRNA Interval_112806 chr4 45125365 45125701 + 0 NA Intergenic Intergenic 11075 ENSMUSG00000082628.1 ENSMUSG00000082628 ENSMUST00000121479 Gm12566 processed_pseudogene Interval_68550 chr16 78576160 78577381 + 0 NA promoter-TSS (ENSMUSG00000022864.14) protein_coding-promoter-TSS (ENSMUSG00000022864.14) -136 ENSMUSG00000022864.14 ENSMUSG00000022864 ENSMUST00000232329 D16Ertd472e protein_coding Interval_133621 chr6 7711899 7713387 + 0 NA Intergenic Intergenic -19771 ENSMUSG00000029752.12 ENSMUSG00000029752 ENSMUST00000148349 Asns protein_coding Interval_112184 chr4 35276515 35277055 + 0 NA Intergenic Intergenic -50610 ENSMUSG00000028300.14 ENSMUSG00000028300 ENSMUST00000149138 C9orf72 protein_coding Interval_13739 chr10 21685638 21686185 + 0 NA promoter-TSS (ENSMUSG00000056716.10) lincRNA-promoter-TSS (ENSMUSG00000056716.10) -500 ENSMUSG00000056716.10 ENSMUSG00000056716 ENSMUST00000071008 Gm5420 lincRNA Interval_43517 chr13 32491735 32492014 + 0 NA Intergenic Intergenic 44541 ENSMUSG00000113449.1 ENSMUSG00000113449 ENSMUST00000221163 Gm48073 lincRNA Interval_164440 chr9 37047259 37047991 + 0 NA intron (ENSMUSG00000035934.16, intron 2 of 4) protein_coding-intron (ENSMUSG00000035934.16, intron 2 of 12) 21226 ENSMUSG00000077401.1 ENSMUSG00000077401 ENSMUST00000104213 n-R5s82 rRNA Interval_70632 chr17 12557253 12557709 + 0 NA Intergenic Intergenic -26712 ENSMUSG00000040966.10 ENSMUSG00000040966 ENSMUST00000233066 Slc22a2 protein_coding Interval_9812 chr1 162597560 162598562 + 0 NA exon (ENSMUSG00000026696.15, exon 8 of 8) protein_coding-exon (ENSMUSG00000026696.15, exon 8 of 8) 27292 ENSMUSG00000026696.15 ENSMUSG00000026696 ENSMUST00000138499 Vamp4 protein_coding Interval_113479 chr4 55285587 55285917 + 0 NA Intergenic Intergenic -3472 ENSMUSG00000081542.1 ENSMUSG00000081542 ENSMUST00000119620 Gm12512 processed_pseudogene Interval_108779 chr3 131227842 131228440 + 0 NA Intergenic Intergenic 43883 ENSMUSG00000027984.8 ENSMUSG00000027984 ENSMUST00000152427 Hadh protein_coding Interval_120228 chr4 144551192 144551663 + 0 NA Intergenic Intergenic -2859 ENSMUSG00000082418.1 ENSMUSG00000082418 ENSMUST00000117079 Gm13126 processed_pseudogene Interval_86218 chr19 37871571 37872163 + 0 NA TTS (ENSMUSG00000118115.1) processed_pseudogene-TTS (ENSMUSG00000118115.1) 1597 ENSMUSG00000118115.1 ENSMUSG00000118115 ENSMUST00000237198 Gm4757 processed_pseudogene Interval_90341 chr2 29868812 29870456 + 0 NA promoter-TSS (ENSMUSG00000039787.13) protein_coding-promoter-TSS (ENSMUSG00000039787.13) 683 ENSMUSG00000039798.2 ENSMUSG00000039798 ENSMUST00000047607 2600006K01Rik antisense Interval_163316 chr9 20814750 20815489 + 0 NA promoter-TSS (ENSMUSG00000004098.7) protein_coding-promoter-TSS (ENSMUSG00000004098.7) -52 ENSMUSG00000004098.7 ENSMUSG00000004098 ENSMUST00000145974 Col5a3 protein_coding Interval_78961 chr18 23059815 23060038 + 0 NA Intergenic Intergenic -20987 ENSMUSG00000041923.15 ENSMUSG00000041923 ENSMUST00000097652 Nol4 protein_coding Interval_96714 chr2 127376060 127376367 + 0 NA Intergenic Intergenic 13005 ENSMUSG00000058620.5 ENSMUSG00000058620 ENSMUST00000071902 Adra2b protein_coding Interval_118329 chr4 130319521 130320295 + 0 NA intron (ENSMUSG00000028772.19, intron 5 of 5) protein_coding-intron (ENSMUSG00000028772.19, intron 7 of 7) -11235 ENSMUSG00000073752.2 ENSMUSG00000073752 ENSMUST00000097865 Gm10570 antisense Interval_44936 chr13 50353569 50353793 + 0 NA intron (ENSMUSG00000101136.1, intron 1 of 1) antisense-intron (ENSMUSG00000101136.1, intron 1 of 1) -77440 ENSMUSG00000037816.10 ENSMUSG00000037816 ENSMUST00000176543 Fbxw17 protein_coding Interval_99455 chr2 161339081 161340175 + 0 NA Intergenic Intergenic 8314 ENSMUSG00000087031.1 ENSMUSG00000087031 ENSMUST00000151260 Gm14241 lincRNA Interval_142503 chr6 142910646 142911675 + 0 NA intron (ENSMUSG00000030283.7, intron 2 of 4) protein_coding-intron (ENSMUSG00000030283.7, intron 2 of 4) 52981 ENSMUSG00000030283.7 ENSMUSG00000030283 ENSMUST00000147058 St8sia1 protein_coding Interval_46861 chr13 72750095 72750462 + 0 NA Intergenic Intergenic -19153 ENSMUSG00000113837.1 ENSMUSG00000113837 ENSMUST00000221207 Gm47902 lincRNA Interval_44672 chr13 47048933 47050151 + 0 NA intron (ENSMUSG00000038080.17, intron 4 of 6) protein_coding-intron (ENSMUSG00000038080.17, intron 3 of 20) 5972 ENSMUSG00000038080.17 ENSMUSG00000038080 ENSMUST00000128977 Kdm1b protein_coding Interval_153736 chr8 5756109 5757068 + 0 NA Intergenic Intergenic 51161 ENSMUSG00000093281.1 ENSMUSG00000093281 ENSMUST00000175540 Gm22565 miRNA Interval_26038 chr11 53627662 53628260 + 0 NA Intergenic Intergenic 6741 ENSMUSG00000020383.1 ENSMUSG00000020383 ENSMUST00000020650 Il13 protein_coding Interval_88034 chr19 58144018 58144847 + 0 NA Intergenic Intergenic -48401 ENSMUSG00000117871.1 ENSMUSG00000117871 ENSMUST00000235250 Gm50287 lincRNA Interval_11442 chr1 181951250 181951467 + 0 NA exon (ENSMUSG00000103722.1, exon 1 of 1) TEC-exon (ENSMUSG00000103722.1, exon 1 of 1) 2017 ENSMUSG00000103722.1 ENSMUSG00000103722 ENSMUST00000194331 2700078F05Rik TEC Interval_106859 chr3 101356118 101356319 + 0 NA Intergenic Intergenic -20865 ENSMUSG00000042035.11 ENSMUSG00000042035 ENSMUST00000195164 Igsf3 protein_coding Interval_126269 chr5 85700770 85700990 + 0 NA Intergenic Intergenic -19894 ENSMUSG00000104878.1 ENSMUSG00000104878 ENSMUST00000197581 Gm43567 lincRNA Interval_36355 chr12 41836951 41837251 + 0 NA intron (ENSMUSG00000056899.10, intron 5 of 5) protein_coding-intron (ENSMUSG00000056899.10, intron 6 of 6) -8578 ENSMUSG00000113105.1 ENSMUSG00000113105 ENSMUST00000221020 Gm47371 antisense Interval_156246 chr8 46523581 46524065 + 0 NA intron (ENSMUSG00000018796.13, intron 10 of 19) protein_coding-intron (ENSMUSG00000018796.13, intron 11 of 20) -28215 ENSMUSG00000031629.14 ENSMUSG00000031629 ENSMUST00000136724 Cenpu protein_coding Interval_114294 chr4 71316619 71317649 + 0 NA Intergenic Intergenic 31192 ENSMUSG00000082017.1 ENSMUSG00000082017 ENSMUST00000121993 Gm11229 processed_pseudogene Interval_122054 chr5 14817266 14817587 + 0 NA intron (ENSMUSG00000061601.15, intron 20 of 22) protein_coding-intron (ENSMUSG00000061601.15, intron 22 of 24) 12525 ENSMUSG00000104672.1 ENSMUSG00000104672 ENSMUST00000198672 Gm43665 TEC Interval_686 chr1 9888264 9892057 + 0 NA intron (ENSMUSG00000025915.14, intron 16 of 17) protein_coding-intron (ENSMUSG00000025915.14, intron 15 of 16) 6693 ENSMUSG00000025915.14 ENSMUSG00000025915 ENSMUST00000188486 Sgk3 protein_coding Interval_149371 chr7 97768930 97769541 + 0 NA Intergenic Intergenic -30946 ENSMUSG00000042797.9 ENSMUSG00000042797 ENSMUST00000205932 Aqp11 protein_coding Interval_89129 chr2 16994421 16994660 + 0 NA Intergenic Intergenic -14709 ENSMUSG00000082235.3 ENSMUSG00000082235 ENSMUST00000118730 Gm13326 processed_pseudogene Interval_70833 chr17 15189971 15190411 + 0 NA Intergenic Intergenic 38032 ENSMUSG00000116655.1 ENSMUSG00000116655 ENSMUST00000231330 Gm35455 lincRNA Interval_149368 chr7 97753900 97755829 + 0 NA Intergenic Intergenic -16575 ENSMUSG00000042797.9 ENSMUSG00000042797 ENSMUST00000205932 Aqp11 protein_coding Interval_38128 chr12 75836052 75837014 + 0 NA intron (ENSMUSG00000063450.14, intron 2 of 15) protein_coding-intron (ENSMUSG00000063450.14, intron 1 of 115) 18183 ENSMUSG00000063450.14 ENSMUSG00000063450 ENSMUST00000151286 Syne2 protein_coding Interval_54623 chr14 72341705 72342406 + 0 NA Intergenic Intergenic -146359 ENSMUSG00000115061.1 ENSMUSG00000115061 ENSMUST00000228357 Gm49290 processed_pseudogene Interval_156474 chr8 48520418 48520655 + 0 NA intron (ENSMUSG00000031561.16, intron 2 of 26) protein_coding-intron (ENSMUSG00000031561.16, intron 2 of 28) 34777 ENSMUSG00000031561.16 ENSMUSG00000031561 ENSMUST00000211812 Tenm3 protein_coding Interval_53188 chr14 55014657 55016104 + 0 NA promoter-TSS (ENSMUSG00000022204.9) protein_coding-promoter-TSS (ENSMUSG00000022204.9) -5509 ENSMUSG00000022204.9 ENSMUSG00000022204 ENSMUST00000226258 Ngdn protein_coding Interval_34466 chr12 4430572 4431694 + 0 NA intron (ENSMUSG00000020647.10, intron 1 of 22) protein_coding-intron (ENSMUSG00000020647.10, intron 1 of 22) 36651 ENSMUSG00000084597.1 ENSMUSG00000084597 ENSMUST00000122648 Gm22343 misc_RNA Interval_65217 chr16 20603740 20605312 + 0 NA promoter-TSS (ENSMUSG00000080669.1) miRNA-promoter-TSS (ENSMUSG00000080669.1) 74 ENSMUSG00000080669.1 ENSMUSG00000080669 ENSMUST00000117019 Mir1224 miRNA Interval_126546 chr5 90159614 90161037 + 0 NA Intergenic Intergenic 28096 ENSMUSG00000043618.9 ENSMUSG00000043618 ENSMUST00000135410 Eif5al3-ps processed_pseudogene Interval_161723 chr8 122342847 122344761 + 0 NA TTS (ENSMUSG00000109957.1) lincRNA-TTS (ENSMUSG00000109957.1) 4633 ENSMUSG00000109957.1 ENSMUSG00000109957 ENSMUST00000210581 Gm45353 lincRNA Interval_136523 chr6 55145858 55146566 + 0 NA Intergenic Intergenic -8247 ENSMUSG00000108285.1 ENSMUSG00000108285 ENSMUST00000204585 Gm34358 lincRNA Interval_38420 chr12 78918329 78919767 + 0 NA Intergenic Intergenic -12084 ENSMUSG00000021118.7 ENSMUSG00000021118 ENSMUST00000021544 Plek2 protein_coding Interval_4659 chr1 75771842 75772084 + 0 NA Intergenic Intergenic 135573 ENSMUSG00000082012.1 ENSMUSG00000082012 ENSMUST00000121823 Gm5257 processed_pseudogene Interval_131711 chr5 139447623 139448254 + 0 NA intron (ENSMUSG00000053553.11, intron 1 of 2) protein_coding-intron (ENSMUSG00000053553.11, intron 2 of 4) 4339 ENSMUSG00000095016.1 ENSMUSG00000095016 ENSMUST00000177923 Gm26285 snRNA Interval_122059 chr5 15750894 15751700 + 0 NA Intergenic Intergenic -37026 ENSMUSG00000073208.12 ENSMUSG00000073208 ENSMUST00000179506 Speer4c protein_coding Interval_152379 chr7 132596858 132597943 + 0 NA promoter-TSS (ENSMUSG00000087657.8) antisense-promoter-TSS (ENSMUSG00000087657.8) 13 ENSMUSG00000087657.8 ENSMUSG00000087657 ENSMUST00000148931 Gm16764 antisense Interval_75577 chr17 68596004 68596194 + 0 NA intron (ENSMUSG00000041565.17, intron 14 of 15) protein_coding-intron (ENSMUSG00000041565.17, intron 14 of 19) -102812 ENSMUSG00000117274.1 ENSMUSG00000117274 ENSMUST00000233538 Gm17921 processed_pseudogene Interval_54310 chr14 67548773 67549107 + 0 NA Intergenic Intergenic -17910 ENSMUSG00000077647.1 ENSMUSG00000077647 ENSMUST00000104459 Gm24981 snoRNA Interval_47564 chr13 88804045 88804848 + 0 NA Intergenic Intergenic -17042 ENSMUSG00000034488.14 ENSMUSG00000034488 ENSMUST00000043111 Edil3 protein_coding Interval_122892 chr5 26990941 26992574 + 0 NA intron (ENSMUSG00000061576.15, intron 1 of 25) protein_coding-intron (ENSMUSG00000061576.15, intron 1 of 25) 15864 ENSMUSG00000081970.1 ENSMUSG00000081970 ENSMUST00000120811 Gm16057 processed_pseudogene Interval_118501 chr4 132133876 132134435 + 0 NA intron (ENSMUSG00000050511.1, intron 1 of 2) protein_coding-intron (ENSMUSG00000050511.1, intron 1 of 2) 10331 ENSMUSG00000050511.1 ENSMUSG00000050511 ENSMUST00000056336 Oprd1 protein_coding Interval_140209 chr6 115564163 115564642 + 0 NA intron (ENSMUSG00000042389.13, intron 6 of 11) protein_coding-intron (ENSMUSG00000042389.13, intron 6 of 11) -10046 ENSMUSG00000042389.13 ENSMUSG00000042389 ENSMUST00000143520 Tsen2 protein_coding Interval_114562 chr4 82489824 82490376 + 0 NA intron (ENSMUSG00000008575.17, intron 2 of 4) protein_coding-intron (ENSMUSG00000008575.17, intron 2 of 11) -17916 ENSMUSG00000087413.1 ENSMUSG00000087413 ENSMUST00000139835 Gm11266 antisense Interval_128686 chr5 114707269 114708566 + 0 NA promoter-TSS (ENSMUSG00000002486.15) protein_coding-promoter-TSS (ENSMUSG00000002486.15) 8203 ENSMUSG00000107340.1 ENSMUSG00000107340 ENSMUST00000202276 Gm42789 antisense Interval_57348 chr15 9362568 9363031 + 0 NA TTS (ENSMUSG00000049152.11) protein_coding-TTS (ENSMUSG00000049152.11) 27210 ENSMUSG00000049152.11 ENSMUSG00000049152 ENSMUST00000144755 Ugt3a2 protein_coding Interval_124373 chr5 44973382 44973573 + 0 NA intron (ENSMUSG00000062496.9, intron 7 of 9) lincRNA-intron (ENSMUSG00000062496.9, intron 7 of 9) 7277 ENSMUSG00000062496.9 ENSMUSG00000062496 ENSMUST00000079389 4930431F12Rik lincRNA Interval_53566 chr14 59357472 59357680 + 0 NA intron (ENSMUSG00000068245.14, intron 3 of 8) protein_coding-intron (ENSMUSG00000068245.14, intron 3 of 10) 7864 ENSMUSG00000068245.14 ENSMUSG00000068245 ENSMUST00000161031 Phf11d protein_coding Interval_107928 chr3 116905585 116906777 + 0 NA exon (ENSMUSG00000033386.10, exon 15 of 15) protein_coding-exon (ENSMUSG00000033386.10, exon 15 of 15) 38149 ENSMUSG00000106073.1 ENSMUSG00000106073 ENSMUST00000196227 Gm42892 TEC Interval_76752 chr17 83831000 83831207 + 0 NA TTS (ENSMUSG00000000673.9) protein_coding-TTS (ENSMUSG00000000673.9) 15686 ENSMUSG00000000673.9 ENSMUSG00000000673 ENSMUST00000234312 Haao protein_coding Interval_15310 chr10 44422198 44422608 + 0 NA intron (ENSMUSG00000111078.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000111078.1, intron 1 of 2) 1921 ENSMUSG00000111078.1 ENSMUSG00000111078 ENSMUST00000215400 Gm35028 lincRNA Interval_61661 chr15 83254426 83255410 + 0 NA Intergenic Intergenic 3179 ENSMUSG00000116416.1 ENSMUSG00000116416 ENSMUST00000230161 Gm32886 processed_pseudogene Interval_47533 chr13 86759011 86759454 + 0 NA Intergenic Intergenic -33300 ENSMUSG00000095933.1 ENSMUSG00000095933 ENSMUST00000177693 Gm25700 miRNA Interval_110156 chr3 153838806 153839777 + 0 NA intron (ENSMUSG00000086438.2, intron 1 of 2) antisense-intron (ENSMUSG00000086438.2, intron 1 of 2) -4975 ENSMUSG00000038997.4 ENSMUSG00000038997 ENSMUST00000198849 Asb17 protein_coding Interval_2714 chr1 43757588 43757787 + 0 NA intron (ENSMUSG00000057363.12, intron 11 of 14) protein_coding-intron (ENSMUSG00000057363.12, intron 11 of 14) -11405 ENSMUSG00000100480.1 ENSMUSG00000100480 ENSMUST00000187764 Gm29156 lincRNA Interval_137125 chr6 67806268 67806436 + 0 NA Intergenic Intergenic -1842 ENSMUSG00000087917.1 ENSMUSG00000087917 ENSMUST00000157292 Gm24911 snoRNA Interval_148342 chr7 80616178 80616412 + 0 NA intron (ENSMUSG00000030527.15, intron 3 of 7) protein_coding-intron (ENSMUSG00000030527.15, intron 6 of 14) -12512 ENSMUSG00000108643.1 ENSMUSG00000108643 ENSMUST00000206056 Gm44931 TEC Interval_136133 chr6 51401415 51402207 + 0 NA exon (ENSMUSG00000108236.1, exon 1 of 3) lincRNA-exon (ENSMUSG00000108236.1, exon 1 of 3) 408 ENSMUSG00000108236.1 ENSMUSG00000108236 ENSMUST00000204546 0610033M10Rik lincRNA Interval_77382 chr17 88339639 88340785 + 0 NA intron (ENSMUSG00000117351.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000117351.1, intron 1 of 1) 2270 ENSMUSG00000088791.1 ENSMUSG00000088791 ENSMUST00000158166 Gm22542 snRNA Interval_71130 chr17 19235395 19236081 + 0 NA Intergenic Intergenic -22192 ENSMUSG00000116587.1 ENSMUSG00000116587 ENSMUST00000232641 Gm49753 lincRNA Interval_82438 chr18 73996900 73997948 + 0 NA intron (ENSMUSG00000024558.12, intron 1 of 1) protein_coding-intron (ENSMUSG00000024558.12, intron 1 of 5) -20483 ENSMUSG00000090263.1 ENSMUSG00000090263 ENSMUST00000159260 D730045A05Rik lincRNA Interval_82720 chr18 76184581 76186630 + 0 NA Intergenic Intergenic 15053 ENSMUSG00000098276.1 ENSMUSG00000098276 ENSMUST00000184549 Mir6358 miRNA Interval_97899 chr2 145167045 145168630 + 0 NA promoter-TSS (ENSMUSG00000063873.10) protein_coding-promoter-TSS (ENSMUSG00000063873.10) -82 ENSMUSG00000063873.10 ENSMUSG00000063873 ENSMUST00000131123 Slc24a3 protein_coding Interval_77106 chr17 86610308 86611093 + 0 NA intron (ENSMUSG00000045038.14, intron 11 of 14) protein_coding-intron (ENSMUSG00000045038.14, intron 12 of 15) 74796 ENSMUSG00000117568.1 ENSMUSG00000117568 ENSMUST00000234033 Gm18832 processed_pseudogene Interval_96484 chr2 124896236 124897620 + 0 NA Intergenic Intergenic -183427 ENSMUSG00000035183.14 ENSMUSG00000035183 ENSMUST00000149963 Slc24a5 protein_coding Interval_166532 chr9 60681104 60681784 + 0 NA intron (ENSMUSG00000047766.15, intron 3 of 16) protein_coding-intron (ENSMUSG00000047766.15, intron 3 of 16) 6090 ENSMUSG00000047766.15 ENSMUSG00000047766 ENSMUST00000132366 Lrrc49 protein_coding Interval_59535 chr15 55106837 55107070 + 0 NA intron (ENSMUSG00000053749.12, intron 2 of 2) processed_transcript-intron (ENSMUSG00000053749.12, intron 2 of 2) 6724 ENSMUSG00000053749.12 ENSMUSG00000053749 ENSMUST00000137301 Gm9920 processed_transcript Interval_144538 chr7 25777107 25777517 + 0 NA intron (ENSMUSG00000002602.16, intron 6 of 13) protein_coding-intron (ENSMUSG00000002602.16, intron 6 of 19) 9754 ENSMUSG00000002602.16 ENSMUSG00000002602 ENSMUST00000137383 Axl protein_coding Interval_92952 chr2 68924225 68924489 + 0 NA intron (ENSMUSG00000027035.10, intron 1 of 10) protein_coding-intron (ENSMUSG00000027035.10, intron 1 of 9) 18354 ENSMUSG00000103747.1 ENSMUSG00000103747 ENSMUST00000192661 Gm38236 TEC Interval_147110 chr7 63224826 63226057 + 0 NA Intergenic Intergenic -12872 ENSMUSG00000030525.8 ENSMUSG00000030525 ENSMUST00000208304 Chrna7 protein_coding Interval_94603 chr2 92587566 92587826 + 0 NA Intergenic Intergenic -4510 ENSMUSG00000099223.1 ENSMUSG00000099223 ENSMUST00000184009 Mir7221 miRNA Interval_33095 chr11 114398208 114398407 + 0 NA Intergenic Intergenic 41178 ENSMUSG00000081548.1 ENSMUSG00000081548 ENSMUST00000122121 Gm11692 processed_pseudogene Interval_167236 chr9 66503887 66505108 + 0 NA intron (ENSMUSG00000038664.16, intron 2 of 2) protein_coding-intron (ENSMUSG00000038664.16, intron 76 of 77) 10112 ENSMUSG00000050503.9 ENSMUSG00000050503 ENSMUST00000056890 Fbxl22 protein_coding Interval_70257 chr17 7299393 7300011 + 0 NA intron (ENSMUSG00000023809.10, intron 20 of 20) protein_coding-intron (ENSMUSG00000023809.10, intron 20 of 20) 16144 ENSMUSG00000116935.1 ENSMUSG00000116935 ENSMUST00000231254 Gpr31a processed_pseudogene Interval_29796 chr11 86874724 86875935 + 0 NA Intergenic Intergenic -74241 ENSMUSG00000018425.18 ENSMUSG00000018425 ENSMUST00000131798 Dhx40 protein_coding Interval_63044 chr15 98797819 98798345 + 0 NA Intergenic Intergenic 8225 ENSMUSG00000022997.9 ENSMUSG00000022997 ENSMUST00000023734 Wnt1 protein_coding Interval_605 chr1 8743918 8745153 + 0 NA intron (ENSMUSG00000025909.16, intron 5 of 8) protein_coding-intron (ENSMUSG00000025909.16, intron 2 of 16) 47627 ENSMUSG00000084353.1 ENSMUSG00000084353 ENSMUST00000119877 Gm15452 processed_pseudogene Interval_58157 chr15 30027413 30027911 + 0 NA Intergenic Intergenic 15368 ENSMUSG00000115080.1 ENSMUSG00000115080 ENSMUST00000226317 Gm5212 processed_pseudogene Interval_119290 chr4 136678589 136679911 + 0 NA intron (ENSMUSG00000028664.14, intron 2 of 5) protein_coding-intron (ENSMUSG00000028664.14, intron 6 of 15) 14790 ENSMUSG00000028664.14 ENSMUSG00000028664 ENSMUST00000144573 Ephb2 protein_coding Interval_23487 chr11 22899904 22900491 + 0 NA intron (ENSMUSG00000051355.18, intron 1 of 1) protein_coding-intron (ENSMUSG00000051355.18, intron 3 of 3) 31296 ENSMUSG00000065869.1 ENSMUSG00000065869 ENSMUST00000083935 Gm24917 snRNA Interval_134278 chr6 24412689 24413018 + 0 NA Intergenic Intergenic 102214 ENSMUSG00000046192.4 ENSMUSG00000046192 ENSMUST00000052277 Iqub protein_coding Interval_89185 chr2 17922213 17922728 + 0 NA Intergenic Intergenic 74488 ENSMUSG00000062651.4 ENSMUSG00000062651 ENSMUST00000105001 H2al2a protein_coding Interval_43977 chr13 38625952 38626254 + 0 NA intron (ENSMUSG00000038982.10, intron 2 of 4) protein_coding-intron (ENSMUSG00000038982.10, intron 2 of 4) -8868 ENSMUSG00000114830.1 ENSMUSG00000114830 ENSMUST00000224644 Gm47400 antisense Interval_5144 chr1 86021759 86022384 + 0 NA promoter-TSS (ENSMUSG00000026226.16) protein_coding-promoter-TSS (ENSMUSG00000026226.16) 111 ENSMUSG00000026226.16 ENSMUSG00000026226 ENSMUST00000131151 Spata3 protein_coding Interval_8588 chr1 143610095 143610610 + 0 NA intron (ENSMUSG00000026361.9, intron 6 of 7) protein_coding-intron (ENSMUSG00000026361.9, intron 15 of 16) -30312 ENSMUSG00000033849.3 ENSMUSG00000033849 ENSMUST00000038252 B3galt2 protein_coding Interval_40021 chr12 100527714 100528202 + 0 NA Intergenic Intergenic 46018 ENSMUSG00000113687.1 ENSMUSG00000113687 ENSMUST00000223531 Gm49703 TEC Interval_132890 chr5 148552243 148553063 + 0 NA promoter-TSS (ENSMUSG00000001687.15) protein_coding-promoter-TSS (ENSMUSG00000001687.15) -997 ENSMUSG00000001687.15 ENSMUSG00000001687 ENSMUST00000201597 Ubl3 protein_coding Interval_146424 chr7 45808103 45809229 + 0 NA intron (ENSMUSG00000003269.17, intron 9 of 12) protein_coding-intron (ENSMUSG00000003269.17, intron 8 of 11) 2222 ENSMUSG00000003269.17 ENSMUSG00000003269 ENSMUST00000210898 Cyth2 protein_coding Interval_98330 chr2 151550297 151550993 + 0 NA intron (ENSMUSG00000032966.14, intron 3 of 5) protein_coding-intron (ENSMUSG00000032966.14, intron 2 of 4) 7908 ENSMUSG00000032966.14 ENSMUSG00000032966 ENSMUST00000132614 Fkbp1a protein_coding Interval_171692 chr9 120184356 120185173 + 0 NA intron (ENSMUSG00000111219.1, intron 1 of 2) processed_transcript-intron (ENSMUSG00000111219.1, intron 1 of 2) 2200 ENSMUSG00000104494.1 ENSMUSG00000104494 ENSMUST00000193250 Gm37111 TEC Interval_78868 chr18 21047298 21049327 + 0 NA Intergenic Intergenic -24032 ENSMUSG00000024313.8 ENSMUSG00000024313 ENSMUST00000082235 Mep1b protein_coding Interval_155675 chr8 36025516 36025924 + 0 NA promoter-TSS (ENSMUSG00000098181.1) processed_pseudogene-promoter-TSS (ENSMUSG00000098181.1) -33 ENSMUSG00000098181.1 ENSMUSG00000098181 ENSMUST00000182321 Rps12-ps24 processed_pseudogene Interval_146540 chr7 46722402 46724556 + 0 NA Intergenic Intergenic 9124 ENSMUSG00000040017.8 ENSMUSG00000040017 ENSMUST00000006952 Saa4 protein_coding Interval_107581 chr3 108652987 108654525 + 0 NA promoter-TSS (ENSMUSG00000027884.16) protein_coding-promoter-TSS (ENSMUSG00000027884.16) -14095 ENSMUSG00000027884.16 ENSMUSG00000027884 ENSMUST00000156811 Clcc1 protein_coding Interval_103139 chr3 35872661 35872885 + 0 NA Intergenic Intergenic 8896 ENSMUSG00000097713.1 ENSMUSG00000097713 ENSMUST00000181445 Gm7741 processed_pseudogene Interval_156678 chr8 56913470 56913717 + 0 NA Intergenic Intergenic -24703 ENSMUSG00000110000.1 ENSMUSG00000110000 ENSMUST00000209983 Gm33501 lincRNA Interval_8033 chr1 135324088 135325535 + 0 NA promoter-TSS (ENSMUSG00000048096.7) protein_coding-promoter-TSS (ENSMUSG00000048096.7) 4 ENSMUSG00000048096.7 ENSMUSG00000048096 ENSMUST00000059352 Lmod1 protein_coding Interval_29724 chr11 86412294 86413080 + 0 NA Intergenic Intergenic 3861 ENSMUSG00000088091.1 ENSMUSG00000088091 ENSMUST00000157466 Gm23667 rRNA Interval_47059 chr13 74928648 74929565 + 0 NA Intergenic Intergenic 64801 ENSMUSG00000086743.2 ENSMUSG00000086743 ENSMUST00000129154 Hnrnpa1l2-ps processed_pseudogene Interval_60426 chr15 73680284 73681625 + 0 NA Intergenic Intergenic 26551 ENSMUSG00000045281.5 ENSMUSG00000045281 ENSMUST00000064166 Gpr20 protein_coding Interval_147482 chr7 67660740 67661131 + 0 NA TTS (ENSMUSG00000030555.16) protein_coding-TTS (ENSMUSG00000030555.16) -9117 ENSMUSG00000030555.16 ENSMUSG00000030555 ENSMUST00000154697 Ttc23 protein_coding Interval_1353 chr1 20912613 20913573 + 0 NA intron (ENSMUSG00000025931.15, intron 1 of 2) protein_coding-intron (ENSMUSG00000025931.15, intron 1 of 2) 2447 ENSMUSG00000077314.1 ENSMUSG00000077314 ENSMUST00000104126 Gm24171 snoRNA Interval_53097 chr14 54430541 54434125 + 0 NA promoter-TSS (ENSMUSG00000000957.11) protein_coding-promoter-TSS (ENSMUSG00000000957.11) 5421 ENSMUSG00000010406.12 ENSMUSG00000010406 ENSMUST00000196273 Mrpl52 protein_coding Interval_40215 chr12 102590141 102591015 + 0 NA exon (ENSMUSG00000102953.1, exon 1 of 1) TEC-exon (ENSMUSG00000102953.1, exon 1 of 1) 832 ENSMUSG00000102953.1 ENSMUSG00000102953 ENSMUST00000192133 Gm37019 TEC Interval_94930 chr2 101905346 101906494 + 0 NA Intergenic Intergenic 19657 ENSMUSG00000027163.13 ENSMUSG00000027163 ENSMUST00000156799 Commd9 protein_coding Interval_465 chr1 5944633 5944843 + 0 NA Intergenic Intergenic -27340 ENSMUSG00000033774.4 ENSMUSG00000033774 ENSMUST00000044180 Npbwr1 protein_coding Interval_127634 chr5 105982961 105983562 + 0 NA Intergenic Intergenic -2079 ENSMUSG00000105129.1 ENSMUSG00000105129 ENSMUST00000199576 Gm19566 processed_pseudogene Interval_38989 chr12 84316516 84317683 + 0 NA promoter-TSS (ENSMUSG00000042472.11) protein_coding-promoter-TSS (ENSMUSG00000042472.11) -19 ENSMUSG00000042472.11 ENSMUSG00000042472 ENSMUST00000220832 Zfp410 protein_coding Interval_155695 chr8 36209770 36210260 + 0 NA Intergenic Intergenic 21643 ENSMUSG00000110176.1 ENSMUSG00000110176 ENSMUST00000209235 Gm35520 lincRNA Interval_28168 chr11 73395297 73395936 + 0 NA exon (ENSMUSG00000069823.11, exon 3 of 3) protein_coding-exon (ENSMUSG00000069823.11, exon 3 of 3) -3402 ENSMUSG00000069824.5 ENSMUSG00000069824 ENSMUST00000134011 Olfr377-ps1 polymorphic_pseudogene Interval_80155 chr18 37901330 37902354 + 0 NA intron (ENSMUSG00000024456.16, intron 6 of 26) protein_coding-intron (ENSMUSG00000024456.16, intron 7 of 27) -3900 ENSMUSG00000024456.16 ENSMUSG00000024456 ENSMUST00000129688 Diaph1 protein_coding Interval_39407 chr12 87224455 87225507 + 0 NA exon (ENSMUSG00000072919.4, exon 3 of 6) protein_coding-exon (ENSMUSG00000072919.4, exon 3 of 6) 13751 ENSMUSG00000072919.4 ENSMUSG00000072919 ENSMUST00000221768 Noxred1 protein_coding Interval_50994 chr14 21534699 21534893 + 0 NA intron (ENSMUSG00000021767.19, intron 2 of 5) protein_coding-intron (ENSMUSG00000021767.19, intron 2 of 16) 17921 ENSMUSG00000021767.19 ENSMUSG00000021767 ENSMUST00000226589 Kat6b protein_coding Interval_1134 chr1 15933983 15935092 + 0 NA Intergenic Intergenic -41815 ENSMUSG00000032719.4 ENSMUSG00000032719 ENSMUST00000040695 Sbspon protein_coding Interval_122657 chr5 24504512 24505518 + 0 NA exon (ENSMUSG00000067724.5, exon 2 of 2) protein_coding-exon (ENSMUSG00000067724.5, exon 2 of 2) 22187 ENSMUSG00000067724.5 ENSMUSG00000067724 ENSMUST00000088311 Gbx1 protein_coding Interval_26832 chr11 60927363 60927654 + 0 NA intron (ENSMUSG00000042549.10, intron 1 of 1) antisense-intron (ENSMUSG00000042549.10, intron 1 of 1) 4359 ENSMUSG00000042549.10 ENSMUSG00000042549 ENSMUST00000123544 Map2k3os antisense Interval_82415 chr18 73824113 73824977 + 0 NA Intergenic Intergenic -9096 ENSMUSG00000024556.4 ENSMUSG00000024556 ENSMUST00000235595 Me2 protein_coding Interval_146271 chr7 45078762 45079136 + 0 NA TTS (ENSMUSG00000003421.13) protein_coding-TTS (ENSMUSG00000003421.13) 9658 ENSMUSG00000019539.11 ENSMUSG00000019539 ENSMUST00000210355 Rcn3 protein_coding Interval_126208 chr5 82346408 82346931 + 0 NA Intergenic Intergenic 9818 ENSMUSG00000106926.1 ENSMUSG00000106926 ENSMUST00000200912 Rpl7-ps7 processed_pseudogene Interval_91482 chr2 39202622 39204560 + 0 NA intron (ENSMUSG00000026753.5, intron 2 of 4) protein_coding-intron (ENSMUSG00000026753.5, intron 4 of 6) 13703 ENSMUSG00000083157.1 ENSMUSG00000083157 ENSMUST00000121167 Gm13511 processed_pseudogene Interval_25307 chr11 46223505 46223800 + 0 NA intron (ENSMUSG00000020340.16, intron 24 of 30) protein_coding-intron (ENSMUSG00000020340.16, intron 24 of 30) -11879 ENSMUSG00000048721.2 ENSMUSG00000048721 ENSMUST00000060185 Fndc9 protein_coding Interval_111340 chr4 19386893 19387137 + 0 NA intron (ENSMUSG00000056494.7, intron 8 of 17) protein_coding-intron (ENSMUSG00000056494.7, intron 8 of 17) 88682 ENSMUSG00000082320.1 ENSMUSG00000082320 ENSMUST00000118921 Gm11877 processed_pseudogene Interval_8785 chr1 151066572 151067260 + 0 NA Intergenic Intergenic -4806 ENSMUSG00000096851.1 ENSMUSG00000096851 ENSMUST00000180118 Gm22756 snRNA Interval_123998 chr5 37079577 37080355 + 0 NA intron (ENSMUSG00000063646.18, intron 1 of 1) protein_coding-intron (ENSMUSG00000063646.18, intron 1 of 12) -5404 ENSMUSG00000117286.1 ENSMUSG00000117286 ENSMUST00000094840 Gm1043 protein_coding Interval_114112 chr4 63514643 63515445 + 0 NA Intergenic Intergenic -29728 ENSMUSG00000039105.6 ENSMUSG00000039105 ENSMUST00000035301 Atp6v1g1 protein_coding Interval_118172 chr4 129350428 129351475 + 0 NA intron (ENSMUSG00000057572.15, intron 6 of 7) protein_coding-intron (ENSMUSG00000057572.15, intron 6 of 7) 15256 ENSMUSG00000057572.15 ENSMUSG00000057572 ENSMUST00000140272 Zbtb8os protein_coding Interval_169206 chr9 95499092 95500742 + 0 NA intron (ENSMUSG00000032407.14, intron 1 of 2) protein_coding-intron (ENSMUSG00000032407.14, intron 2 of 26) 11968 ENSMUSG00000032407.14 ENSMUSG00000032407 ENSMUST00000188017 U2surp protein_coding Interval_53254 chr14 55606038 55606296 + 0 NA TTS (ENSMUSG00000002325.15) protein_coding-TTS (ENSMUSG00000002325.15) -1651 ENSMUSG00000002325.15 ENSMUSG00000002325 ENSMUST00000226275 Irf9 protein_coding Interval_170989 chr9 113519362 113520266 + 0 NA intron (ENSMUSG00000109890.2, intron 2 of 4) lincRNA-intron (ENSMUSG00000109890.2, intron 2 of 4) -10415 ENSMUSG00000111388.1 ENSMUSG00000111388 ENSMUST00000213870 Gm7183 processed_pseudogene Interval_24043 chr11 29732317 29732604 + 0 NA intron (ENSMUSG00000020458.16, intron 1 of 6) protein_coding-intron (ENSMUSG00000020458.16, intron 1 of 6) 39512 ENSMUSG00000020458.16 ENSMUSG00000020458 ENSMUST00000126162 Rtn4 protein_coding Interval_82770 chr18 76977818 76978934 + 0 NA TTS (ENSMUSG00000025420.13) protein_coding-TTS (ENSMUSG00000025420.13) 33992 ENSMUSG00000025421.15 ENSMUSG00000025421 ENSMUST00000148955 Hdhd2 protein_coding Interval_52554 chr14 47457715 47458038 + 0 NA intron (ENSMUSG00000037536.14, intron 1 of 3) protein_coding-intron (ENSMUSG00000037536.14, intron 1 of 3) -15241 ENSMUSG00000037536.14 ENSMUSG00000037536 ENSMUST00000228634 Fbxo34 protein_coding Interval_7905 chr1 134500795 134502576 + 0 NA intron (ENSMUSG00000042229.9, intron 1 of 1) protein_coding-intron (ENSMUSG00000042229.9, intron 1 of 1) -3653 ENSMUSG00000077202.1 ENSMUSG00000077202 ENSMUST00000104014 Gm25612 snoRNA Interval_97448 chr2 136670560 136670833 + 0 NA Intergenic Intergenic -9265 ENSMUSG00000103066.1 ENSMUSG00000103066 ENSMUST00000193814 Gm36967 TEC Interval_166365 chr9 58659255 58659567 + 0 NA promoter-TSS (ENSMUSG00000074269.10) protein_coding-promoter-TSS (ENSMUSG00000074269.10) 4858 ENSMUSG00000074269.10 ENSMUSG00000074269 ENSMUST00000186960 Rec114 protein_coding Interval_93605 chr2 74777849 74778679 + 0 NA Intergenic Intergenic 15284 ENSMUSG00000042448.5 ENSMUSG00000042448 ENSMUST00000047793 Hoxd1 protein_coding Interval_101602 chr3 7566655 7568605 + 0 NA Intergenic Intergenic -45075 ENSMUSG00000097804.1 ENSMUSG00000097804 ENSMUST00000181286 Gm16685 antisense Interval_86665 chr19 42403749 42404648 + 0 NA intron (ENSMUSG00000042401.8, intron 2 of 14) protein_coding-intron (ENSMUSG00000042401.8, intron 2 of 14) -6196 ENSMUSG00000117728.1 ENSMUSG00000117728 ENSMUST00000235253 Gm34299 antisense Interval_146101 chr7 43914746 43915579 + 0 NA Intergenic Intergenic -2895 ENSMUSG00000108444.1 ENSMUSG00000108444 ENSMUST00000206865 Klk2-ps transcribed_unprocessed_pseudogene Interval_82535 chr18 74994459 74995063 + 0 NA Intergenic Intergenic -3797 ENSMUSG00000062328.8 ENSMUSG00000062328 ENSMUST00000079716 Rpl17 protein_coding Interval_87866 chr19 56680564 56681553 + 0 NA Intergenic Intergenic 8439 ENSMUSG00000117859.1 ENSMUSG00000117859 ENSMUST00000237417 Gm32492 processed_transcript Interval_126531 chr5 89827668 89828263 + 0 NA promoter-TSS (ENSMUSG00000077175.1) snoRNA-promoter-TSS (ENSMUSG00000077175.1) -906 ENSMUSG00000077175.1 ENSMUSG00000077175 ENSMUST00000103987 Gm25758 snoRNA Interval_165404 chr9 47543961 47544411 + 0 NA intron (ENSMUSG00000032076.20, intron 1 of 8) protein_coding-intron (ENSMUSG00000032076.20, intron 1 of 8) 13834 ENSMUSG00000032076.20 ENSMUSG00000032076 ENSMUST00000034581 Cadm1 protein_coding Interval_168332 chr9 78807513 78807799 + 0 NA Intergenic Intergenic 14182 ENSMUSG00000059422.5 ENSMUSG00000059422 ENSMUST00000182917 Gm8116 processed_pseudogene Interval_55339 chr14 83823050 83823624 + 0 NA Intergenic Intergenic 70689 ENSMUSG00000115780.1 ENSMUSG00000115780 ENSMUST00000226600 Gm49053 processed_pseudogene Interval_40262 chr12 102866323 102868073 + 0 NA exon (ENSMUSG00000114184.1, exon 1 of 1) processed_pseudogene-exon (ENSMUSG00000114184.1, exon 1 of 1) 291 ENSMUSG00000114184.1 ENSMUSG00000114184 ENSMUST00000222811 Gm7143 processed_pseudogene Interval_27068 chr11 62660541 62661561 + 0 NA exon (ENSMUSG00000048497.11, exon 3 of 3) protein_coding-intron (ENSMUSG00000048497.11, intron 2 of 2) 12216 ENSMUSG00000048497.11 ENSMUSG00000048497 ENSMUST00000129162 Mmgt2 protein_coding Interval_135116 chr6 35578503 35580071 + 0 NA Intergenic Intergenic 36382 ENSMUSG00000107110.1 ENSMUSG00000107110 ENSMUST00000201009 Gm42931 lincRNA Interval_21983 chr11 5559395 5559744 + 0 NA Intergenic Intergenic 1166 ENSMUSG00000077304.1 ENSMUSG00000077304 ENSMUST00000104116 Gm22471 snoRNA Interval_135576 chr6 40688982 40689507 + 0 NA intron (ENSMUSG00000068587.10, intron 33 of 92) protein_coding-intron (ENSMUSG00000068587.10, intron 31 of 47) 46265 ENSMUSG00000068587.10 ENSMUSG00000068587 ENSMUST00000202311 Mgam protein_coding Interval_127838 chr5 108110953 108111529 + 0 NA intron (ENSMUSG00000063406.11, intron 2 of 2) protein_coding-intron (ENSMUSG00000063406.11, intron 2 of 2) 21289 ENSMUSG00000063406.11 ENSMUSG00000063406 ENSMUST00000119784 Tmed5 protein_coding Interval_93852 chr2 77499302 77499479 + 0 NA intron (ENSMUSG00000027016.17, intron 2 of 4) protein_coding-intron (ENSMUSG00000027016.17, intron 2 of 7) 36721 ENSMUSG00000085845.7 ENSMUSG00000085845 ENSMUST00000126572 Gm13944 antisense Interval_74676 chr17 55878267 55879621 + 0 NA promoter-TSS (ENSMUSG00000057835.7) protein_coding-promoter-TSS (ENSMUSG00000057835.7) -14 ENSMUSG00000057835.7 ENSMUSG00000057835 ENSMUST00000079642 Zfp119a protein_coding Interval_121571 chr5 3526382 3526597 + 0 NA exon (ENSMUSG00000040274.11, exon 8 of 8) protein_coding-exon (ENSMUSG00000040274.11, exon 8 of 8) -17548 ENSMUSG00000105656.1 ENSMUSG00000105656 ENSMUST00000198296 Gm43017 sense_intronic Interval_4693 chr1 77373869 77374771 + 0 NA intron (ENSMUSG00000026235.14, intron 15 of 15) protein_coding-intron (ENSMUSG00000026235.14, intron 16 of 17) 122448 ENSMUSG00000099141.1 ENSMUSG00000099141 ENSMUST00000184495 Mir6352 miRNA Interval_111668 chr4 25651721 25651957 + 0 NA intron (ENSMUSG00000055373.8, intron 1 of 1) protein_coding-intron (ENSMUSG00000055373.8, intron 2 of 2) -85017 ENSMUSG00000065040.1 ENSMUSG00000065040 ENSMUST00000083106 Gm24977 snRNA Interval_127241 chr5 101825583 101825803 + 0 NA Intergenic Intergenic -11759 ENSMUSG00000092354.7 ENSMUSG00000092354 ENSMUST00000174312 Gm20548 antisense Interval_35018 chr12 16696512 16696800 + 0 NA exon (ENSMUSG00000036523.16, exon 22 of 33) protein_coding-exon (ENSMUSG00000036523.16, exon 22 of 33) 24416 ENSMUSG00000114049.1 ENSMUSG00000114049 ENSMUST00000223113 Gm48140 antisense Interval_89211 chr2 18087075 18088280 + 0 NA intron (ENSMUSG00000026743.16, intron 4 of 5) protein_coding-intron (ENSMUSG00000026743.16, intron 3 of 22) 22836 ENSMUSG00000026743.16 ENSMUSG00000026743 ENSMUST00000149786 Mllt10 protein_coding Interval_60133 chr15 66033670 66034609 + 0 NA intron (ENSMUSG00000056258.9, intron 1 of 14) protein_coding-intron (ENSMUSG00000056258.9, intron 1 of 14) -40413 ENSMUSG00000099013.1 ENSMUSG00000099013 ENSMUST00000184492 Gm27153 antisense Interval_45598 chr13 56167429 56168236 + 0 NA TTS (ENSMUSG00000077799.1) snoRNA-TTS (ENSMUSG00000077799.1) 232 ENSMUSG00000077799.1 ENSMUSG00000077799 ENSMUST00000104611 Gm25148 snoRNA Interval_173787 chrX 104166960 104167539 + 0 NA intron (ENSMUSG00000046449.15, intron 1 of 4) protein_coding-intron (ENSMUSG00000046449.15, intron 1 of 3) 33936 ENSMUSG00000046449.15 ENSMUSG00000046449 ENSMUST00000056502 Nexmif protein_coding Interval_90009 chr2 27288785 27289627 + 0 NA intron (ENSMUSG00000009621.18, intron 11 of 29) protein_coding-intron (ENSMUSG00000009621.18, intron 11 of 27) -37498 ENSMUSG00000086669.1 ENSMUSG00000086669 ENSMUST00000156020 AA645442 antisense Interval_38339 chr12 77517853 77518131 + 0 NA Intergenic Intergenic 8406 ENSMUSG00000111939.1 ENSMUSG00000111939 ENSMUST00000219567 Gm48177 processed_pseudogene Interval_45286 chr13 54035590 54035979 + 0 NA Intergenic Intergenic 18996 ENSMUSG00000021478.6 ENSMUSG00000021478 ENSMUST00000222706 Drd1 protein_coding Interval_54754 chr14 74755422 74755879 + 0 NA TTS (ENSMUSG00000068015.8) protein_coding-TTS (ENSMUSG00000068015.8) 23331 ENSMUSG00000021996.16 ENSMUSG00000021996 ENSMUST00000176726 Esd protein_coding Interval_104128 chr3 58876651 58877091 + 0 NA intron (ENSMUSG00000043850.15, intron 1 of 3) protein_coding-intron (ENSMUSG00000043850.15, intron 1 of 2) -11074 ENSMUSG00000043850.15 ENSMUSG00000043850 ENSMUST00000161419 Clrn1 protein_coding Interval_89438 chr2 20676619 20676826 + 0 NA intron (ENSMUSG00000036617.17, intron 5 of 5) protein_coding-intron (ENSMUSG00000036617.17, intron 4 of 18) 36512 ENSMUSG00000086418.1 ENSMUSG00000086418 ENSMUST00000137186 Gm13362 antisense Interval_102967 chr3 33843841 33844577 + 0 NA promoter-TSS (ENSMUSG00000027676.11) protein_coding-promoter-TSS (ENSMUSG00000027676.11) -17669 ENSMUSG00000027676.11 ENSMUSG00000027676 ENSMUST00000197230 Ccdc39 protein_coding Interval_57441 chr15 10976660 10977759 + 0 NA intron (ENSMUSG00000058914.12, intron 5 of 5) protein_coding-intron (ENSMUSG00000058914.12, intron 5 of 5) -6197 ENSMUSG00000022244.7 ENSMUSG00000022244 ENSMUST00000228886 Amacr protein_coding Interval_63920 chr16 4569128 4569480 + 0 NA Intergenic Intergenic -10521 ENSMUSG00000005718.8 ENSMUSG00000005718 ENSMUST00000229956 Tfap4 protein_coding Interval_13964 chr10 25140056 25140627 + 0 NA Intergenic Intergenic 80350 ENSMUSG00000039166.16 ENSMUSG00000039166 ENSMUST00000176231 Akap7 protein_coding Interval_112209 chr4 35739461 35739677 + 0 NA intron (ENSMUSG00000045083.14, intron 2 of 2) protein_coding-intron (ENSMUSG00000045083.14, intron 2 of 2) 105635 ENSMUSG00000045083.14 ENSMUSG00000045083 ENSMUST00000125128 Lingo2 protein_coding Interval_144470 chr7 25339102 25339420 + 0 NA intron (ENSMUSG00000045039.9, intron 14 of 40) protein_coding-intron (ENSMUSG00000045039.9, intron 14 of 40) -6720 ENSMUSG00000045039.9 ENSMUSG00000045039 ENSMUST00000153077 Megf8 protein_coding Interval_55380 chr14 86342429 86343339 + 0 NA Intergenic Intergenic 22599 ENSMUSG00000115089.1 ENSMUSG00000115089 ENSMUST00000226132 Gm4350 processed_pseudogene Interval_460 chr1 5684134 5684833 + 0 NA Intergenic Intergenic -39738 ENSMUSG00000093015.1 ENSMUSG00000093015 ENSMUST00000175274 Gm22463 miRNA Interval_73373 chr17 36850518 36850780 + 0 NA intron (ENSMUSG00000024457.16, intron 2 of 9) protein_coding-intron (ENSMUSG00000024457.16, intron 2 of 9) -8297 ENSMUSG00000065651.1 ENSMUSG00000065651 ENSMUST00000083717 Gm25973 snoRNA Interval_124625 chr5 52526521 52526826 + 0 NA Intergenic Intergenic -12158 ENSMUSG00000104829.1 ENSMUSG00000104829 ENSMUST00000198876 Gm43685 antisense Interval_85254 chr19 24183775 24184295 + 0 NA intron (ENSMUSG00000024812.11, intron 1 of 22) protein_coding-intron (ENSMUSG00000024812.11, intron 1 of 22) 29965 ENSMUSG00000118371.1 ENSMUSG00000118371 ENSMUST00000237530 Gm50308 processed_pseudogene Interval_93018 chr2 69614893 69615370 + 0 NA Intergenic Intergenic -32099 ENSMUSG00000063145.10 ENSMUSG00000063145 ENSMUST00000127806 Bbs5 protein_coding Interval_50213 chr14 10205954 10206958 + 0 NA intron (ENSMUSG00000060579.13, intron 1 of 5) protein_coding-intron (ENSMUSG00000060579.13, intron 5 of 9) 27836 ENSMUSG00000114391.1 ENSMUSG00000114391 ENSMUST00000225711 Gm48439 antisense Interval_65254 chr16 20895754 20896017 + 0 NA Intergenic Intergenic -2326 ENSMUSG00000116850.1 ENSMUSG00000116850 ENSMUST00000232124 Gm49742 lincRNA Interval_106425 chr3 96115295 96115552 + 0 NA intron (ENSMUSG00000038495.14, intron 2 of 12) protein_coding-intron (ENSMUSG00000038495.14, intron 1 of 11) 10877 ENSMUSG00000038495.14 ENSMUSG00000038495 ENSMUST00000135263 Otud7b protein_coding Interval_33245 chr11 115451773 115452117 + 0 NA Intergenic Intergenic -3885 ENSMUSG00000093096.1 ENSMUSG00000093096 ENSMUST00000175355 Mir3968 miRNA Interval_113214 chr4 50277592 50277917 + 0 NA Intergenic Intergenic -8992 ENSMUSG00000095394.1 ENSMUSG00000095394 ENSMUST00000104120 Gm25485 snoRNA Interval_35534 chr12 24590146 24590676 + 0 NA intron (ENSMUSG00000020656.16, intron 6 of 13) protein_coding-intron (ENSMUSG00000020656.16, intron 6 of 13) 9692 ENSMUSG00000020656.16 ENSMUSG00000020656 ENSMUST00000020985 Grhl1 protein_coding Interval_41819 chr12 119881694 119881944 + 0 NA Intergenic Intergenic 5166 ENSMUSG00000112946.1 ENSMUSG00000112946 ENSMUST00000223155 Gm9280 unprocessed_pseudogene Interval_51 GL456212.1 84117 86644 + 0 NA NA NA NA NA Interval_54331 chr14 67723138 67724264 + 0 NA intron (ENSMUSG00000034327.17, intron 1 of 11) protein_coding-intron (ENSMUSG00000034327.17, intron 1 of 10) 7416 ENSMUSG00000034327.17 ENSMUSG00000034327 ENSMUST00000156700 Kctd9 protein_coding Interval_136274 chr6 52460333 52460633 + 0 NA Intergenic Intergenic -31968 ENSMUSG00000107895.1 ENSMUSG00000107895 ENSMUST00000203771 1700094M24Rik lincRNA Interval_118807 chr4 133820770 133821877 + 0 NA Intergenic Intergenic 4903 ENSMUSG00000084789.1 ENSMUSG00000084789 ENSMUST00000129875 Gm12974 lincRNA Interval_73551 chr17 40289076 40289538 + 0 NA Intergenic Intergenic 29900 ENSMUSG00000025431.4 ENSMUSG00000025431 ENSMUST00000026498 Crisp1 protein_coding Interval_114934 chr4 87229621 87230852 + 0 NA intron (ENSMUSG00000037996.17, intron 1 of 2) protein_coding-intron (ENSMUSG00000037996.17, intron 1 of 10) 231 ENSMUSG00000037996.17 ENSMUSG00000037996 ENSMUST00000155361 Slc24a2 protein_coding Interval_143900 chr7 17036040 17036258 + 0 NA intron (ENSMUSG00000004328.15, intron 14 of 14) protein_coding-intron (ENSMUSG00000004328.15, intron 14 of 14) -8255 ENSMUSG00000003099.11 ENSMUSG00000003099 ENSMUST00000145997 Ppp5c protein_coding Interval_136564 chr6 55717346 55718153 + 0 NA Intergenic Intergenic 33178 ENSMUSG00000108063.1 ENSMUSG00000108063 ENSMUST00000203099 Gm3279 lincRNA Interval_85875 chr19 32621984 32622201 + 0 NA intron (ENSMUSG00000024899.7, intron 1 of 11) protein_coding-intron (ENSMUSG00000024899.7, intron 1 of 12) 2087 ENSMUSG00000024899.7 ENSMUSG00000024899 ENSMUST00000025833 Papss2 protein_coding Interval_96873 chr2 129166508 129167692 + 0 NA intron (ENSMUSG00000084826.7, intron 1 of 1) antisense-intron (ENSMUSG00000084826.7, intron 1 of 1) -1600 ENSMUSG00000082274.1 ENSMUSG00000082274 ENSMUST00000120625 Gm14026 processed_pseudogene Interval_9837 chr1 162853172 162853726 + 0 NA intron (ENSMUSG00000040181.14, intron 2 of 5) protein_coding-intron (ENSMUSG00000040181.14, intron 2 of 8) -18777 ENSMUSG00000040181.14 ENSMUSG00000040181 ENSMUST00000111518 Fmo1 protein_coding Interval_105191 chr3 83706637 83707152 + 0 NA Intergenic Intergenic 4642 ENSMUSG00000088597.1 ENSMUSG00000088597 ENSMUST00000157972 Gm24584 snRNA Interval_86980 chr19 45310518 45311717 + 0 NA promoter-TSS (ENSMUSG00000100417.2) lincRNA-promoter-TSS (ENSMUSG00000100417.2) -6776 ENSMUSG00000102057.1 ENSMUSG00000102057 ENSMUST00000191181 Gm29594 lincRNA Interval_1058 chr1 14650009 14651340 + 0 NA Intergenic Intergenic -102263 ENSMUSG00000054493.2 ENSMUSG00000054493 ENSMUST00000067599 Gm9947 antisense Interval_52154 chr14 37203785 37204545 + 0 NA Intergenic Intergenic -20704 ENSMUSG00000077306.1 ENSMUSG00000077306 ENSMUST00000104118 Gm22469 snoRNA Interval_55686 chr14 99037714 99039804 + 0 NA intron (ENSMUSG00000033186.9, intron 1 of 1) protein_coding-intron (ENSMUSG00000033186.9, intron 2 of 2) 7375 ENSMUSG00000033186.9 ENSMUSG00000033186 ENSMUST00000227197 Mzt1 protein_coding Interval_55722 chr14 99312755 99313639 + 0 NA exon (ENSMUSG00000005148.8, exon 4 of 4) protein_coding-exon (ENSMUSG00000005148.8, exon 4 of 4) 14043 ENSMUSG00000005148.8 ENSMUSG00000005148 ENSMUST00000226784 Klf5 protein_coding Interval_42257 chr13 11106313 11107431 + 0 NA Intergenic Intergenic 132449 ENSMUSG00000113673.1 ENSMUSG00000113673 ENSMUST00000221075 Gm47486 lincRNA Interval_118497 chr4 132113223 132114154 + 0 NA exon (ENSMUSG00000050511.1, exon 3 of 3) protein_coding-exon (ENSMUSG00000050511.1, exon 3 of 3) -4325 ENSMUSG00000102796.1 ENSMUSG00000102796 ENSMUST00000194907 Gm37711 TEC Interval_70103 chr17 5331324 5331985 + 0 NA intron (ENSMUSG00000069729.14, intron 15 of 19) protein_coding-intron (ENSMUSG00000069729.14, intron 14 of 18) -57109 ENSMUSG00000101133.1 ENSMUSG00000101133 ENSMUST00000190732 Gm29050 antisense Interval_40737 chr12 108049152 108050197 + 0 NA Intergenic Intergenic -46260 ENSMUSG00000048251.15 ENSMUSG00000048251 ENSMUST00000109891 Bcl11b protein_coding Interval_18219 chr10 83806601 83807848 + 0 NA Intergenic Intergenic 4341 ENSMUSG00000112077.1 ENSMUSG00000112077 ENSMUST00000218819 Gm47245 processed_pseudogene Interval_69454 chr16 93575913 93577839 + 0 NA Intergenic Intergenic 9755 ENSMUSG00000022948.16 ENSMUSG00000022948 ENSMUST00000156298 Setd4 protein_coding Interval_25737 chr11 51233760 51234400 + 0 NA promoter-TSS (ENSMUSG00000061469.3) protein_coding-promoter-TSS (ENSMUSG00000061469.3) 13607 ENSMUSG00000061469.3 ENSMUSG00000061469 ENSMUST00000074198 Gm12569 protein_coding Interval_129921 chr5 123067575 123068245 + 0 NA promoter-TSS (ENSMUSG00000054434.14) protein_coding-promoter-TSS (ENSMUSG00000054434.14) 1668 ENSMUSG00000080836.1 ENSMUSG00000080836 ENSMUST00000119611 Gm6444 processed_pseudogene Interval_154836 chr8 24148643 24148911 + 0 NA intron (ENSMUSG00000037492.16, intron 7 of 7) protein_coding-intron (ENSMUSG00000037492.16, intron 7 of 7) -25127 ENSMUSG00000053979.4 ENSMUSG00000053979 ENSMUST00000066740 A730045E13Rik lincRNA Interval_11621 chr1 183388564 183389469 + 0 NA promoter-TSS (ENSMUSG00000072258.10) protein_coding-promoter-TSS (ENSMUSG00000072258.10) 17940 ENSMUSG00000103415.1 ENSMUSG00000103415 ENSMUST00000194142 Gm37339 processed_pseudogene Interval_86413 chr19 40325126 40326724 + 0 NA exon (ENSMUSG00000025006.18, exon 18 of 27) protein_coding-exon (ENSMUSG00000025006.18, exon 18 of 27) 27954 ENSMUSG00000114796.1 ENSMUSG00000114796 ENSMUST00000225358 A930028N01Rik antisense Interval_1985 chr1 35566256 35566858 + 0 NA Intergenic Intergenic 84740 ENSMUSG00000104417.1 ENSMUSG00000104417 ENSMUST00000195168 Gm37068 lincRNA Interval_80295 chr18 38928936 38929266 + 0 NA promoter-TSS (ENSMUSG00000036585.16) protein_coding-promoter-TSS (ENSMUSG00000036585.16) 36384 ENSMUSG00000117994.1 ENSMUSG00000117994 ENSMUST00000156167 Gm5820 lincRNA Interval_151838 chr7 127020968 127022002 + 0 NA promoter-TSS (ENSMUSG00000045114.10) protein_coding-promoter-TSS (ENSMUSG00000045114.10) -1130 ENSMUSG00000045114.10 ENSMUSG00000045114 ENSMUST00000202936 Prrt2 protein_coding Interval_66235 chr16 32484258 32485258 + 0 NA intron (ENSMUSG00000035699.8, intron 2 of 6) protein_coding-intron (ENSMUSG00000035699.8, intron 2 of 8) 2945 ENSMUSG00000035699.8 ENSMUSG00000035699 ENSMUST00000232418 Slc51a protein_coding Interval_44606 chr13 46669098 46670541 + 0 NA exon (ENSMUSG00000069237.8, exon 1 of 5) protein_coding-exon (ENSMUSG00000069237.8, exon 1 of 5) -1372 ENSMUSG00000069237.8 ENSMUSG00000069237 ENSMUST00000150376 Fam8a1 protein_coding Interval_83501 chr18 88065580 88065967 + 0 NA Intergenic Intergenic 30777 ENSMUSG00000117801.1 ENSMUSG00000117801 ENSMUST00000237897 Gm50391 processed_pseudogene Interval_5327 chr1 87607403 87609159 + 0 NA Intergenic Intergenic 34254 ENSMUSG00000079434.8 ENSMUSG00000079434 ENSMUST00000070898 Neu2 protein_coding Interval_115883 chr4 105658514 105659088 + 0 NA Intergenic Intergenic 80461 ENSMUSG00000082061.1 ENSMUSG00000082061 ENSMUST00000121621 Gm12726 processed_pseudogene Interval_35793 chr12 29889605 29890523 + 0 NA intron (ENSMUSG00000061911.15, intron 19 of 24) protein_coding-intron (ENSMUSG00000061911.15, intron 19 of 24) 38516 ENSMUSG00000061911.15 ENSMUSG00000061911 ENSMUST00000219744 Myt1l protein_coding Interval_126931 chr5 97391490 97392945 + 0 NA promoter-TSS (ENSMUSG00000097516.7) lincRNA-promoter-TSS (ENSMUSG00000097516.7) 162 ENSMUSG00000046000.5 ENSMUSG00000046000 ENSMUST00000060265 Naa11 protein_coding Interval_92414 chr2 59617102 59617647 + 0 NA intron (ENSMUSG00000035168.16, intron 1 of 1) protein_coding-intron (ENSMUSG00000035168.16, intron 1 of 26) -52690 ENSMUSG00000081157.1 ENSMUSG00000081157 ENSMUST00000118837 Gm13552 processed_pseudogene Interval_136487 chr6 54886077 54886736 + 0 NA intron (ENSMUSG00000058446.14, intron 4 of 4) protein_coding-intron (ENSMUSG00000058446.14, intron 4 of 4) -16016 ENSMUSG00000107841.1 ENSMUSG00000107841 ENSMUST00000204539 Gm44185 TEC Interval_153110 chr7 141416427 141416767 + 0 NA Intergenic Intergenic -6679 ENSMUSG00000051007.15 ENSMUSG00000051007 ENSMUST00000142852 Gatd1 protein_coding Interval_136033 chr6 50127180 50127391 + 0 NA intron (ENSMUSG00000038388.14, intron 1 of 9) protein_coding-intron (ENSMUSG00000038388.14, intron 1 of 13) 17007 ENSMUSG00000038388.14 ENSMUSG00000038388 ENSMUST00000167319 Mpp6 protein_coding Interval_169100 chr9 92457454 92458406 + 0 NA intron (ENSMUSG00000032377.8, intron 1 of 5) protein_coding-intron (ENSMUSG00000032377.8, intron 1 of 8) 536 ENSMUSG00000032377.8 ENSMUSG00000032377 ENSMUST00000143866 Plscr4 protein_coding Interval_106685 chr3 98778911 98779762 + 0 NA Intergenic Intergenic -16932 ENSMUSG00000062410.14 ENSMUSG00000062410 ENSMUST00000125483 Hsd3b3 protein_coding Interval_116805 chr4 117369641 117370221 + 0 NA intron (ENSMUSG00000028677.19, intron 2 of 2) protein_coding-intron (ENSMUSG00000028677.19, intron 2 of 14) 73787 ENSMUSG00000085749.1 ENSMUSG00000085749 ENSMUST00000139618 Gm12843 antisense Interval_15743 chr10 55669857 55670334 + 0 NA Intergenic Intergenic 431908 ENSMUSG00000112528.1 ENSMUSG00000112528 ENSMUST00000218919 Gm29794 processed_pseudogene Interval_85014 chr19 21502627 21503210 + 0 NA Intergenic Intergenic -49286 ENSMUSG00000079382.3 ENSMUSG00000079382 ENSMUST00000112772 Gm3443 transcribed_unitary_pseudogene Interval_46694 chr13 69384749 69384980 + 0 NA Intergenic Intergenic -10719 ENSMUSG00000113595.1 ENSMUSG00000113595 ENSMUST00000221615 Gm35514 lincRNA Interval_155187 chr8 27274270 27274470 + 0 NA intron (ENSMUSG00000031490.6, intron 4 of 4) protein_coding-intron (ENSMUSG00000031490.6, intron 2 of 2) -5071 ENSMUSG00000109953.1 ENSMUSG00000109953 ENSMUST00000209427 5430430B14Rik TEC Interval_72087 chr17 27962911 27964080 + 0 NA intron (ENSMUSG00000085846.1, intron 1 of 2) protein_coding-intron (ENSMUSG00000024219.16, intron 1 of 24) 1821 ENSMUSG00000085846.1 ENSMUSG00000085846 ENSMUST00000145924 Gm15597 antisense Interval_123692 chr5 34549210 34550174 + 0 NA promoter-TSS (ENSMUSG00000054520.15) protein_coding-promoter-TSS (ENSMUSG00000054520.15) -1853 ENSMUSG00000054520.15 ENSMUSG00000054520 ENSMUST00000202745 Sh3bp2 protein_coding Interval_82489 chr18 74442041 74444628 + 0 NA intron (ENSMUSG00000025885.18, intron 1 of 39) protein_coding-intron (ENSMUSG00000025885.18, intron 1 of 38) 22529 ENSMUSG00000118303.1 ENSMUSG00000118303 ENSMUST00000235981 Gm50168 processed_pseudogene Interval_71451 chr17 23828367 23829882 + 0 NA promoter-TSS (ENSMUSG00000055839.6) protein_coding-promoter-TSS (ENSMUSG00000055839.6) -249 ENSMUSG00000055839.6 ENSMUSG00000055839 ENSMUST00000233882 Elob protein_coding Interval_163894 chr9 27766848 27767202 + 0 NA Intergenic Intergenic -24122 ENSMUSG00000062257.13 ENSMUSG00000062257 ENSMUST00000126845 Opcml protein_coding Interval_2770 chr1 44568301 44568703 + 0 NA intron (ENSMUSG00000056870.9, intron 2 of 3) protein_coding-intron (ENSMUSG00000056870.9, intron 1 of 10) 7617 ENSMUSG00000102319.1 ENSMUSG00000102319 ENSMUST00000194332 Gm37626 TEC Interval_156862 chr8 61283382 61283730 + 0 NA intron (ENSMUSG00000099419.1, intron 1 of 4) protein_coding-intron (ENSMUSG00000031642.9, intron 2 of 11) 5316 ENSMUSG00000099419.1 ENSMUSG00000099419 ENSMUST00000188654 1700001D01Rik antisense Interval_113961 chr4 61855546 61856412 + 0 NA intron (ENSMUSG00000081755.1, intron 1 of 1) processed_pseudogene-intron (ENSMUSG00000081755.1, intron 1 of 1) 575 ENSMUSG00000081755.1 ENSMUSG00000081755 ENSMUST00000118063 Mup-ps23 processed_pseudogene Interval_13558 chr10 19601664 19601901 + 0 NA TTS (ENSMUSG00000020009.13) protein_coding-TTS (ENSMUSG00000020009.13) 9720 ENSMUSG00000020009.13 ENSMUSG00000020009 ENSMUST00000168074 Ifngr1 protein_coding Interval_98599 chr2 153508845 153509971 + 0 NA intron (ENSMUSG00000061411.12, intron 1 of 10) protein_coding-intron (ENSMUSG00000061411.12, intron 1 of 10) 16618 ENSMUSG00000079001.1 ENSMUSG00000079001 ENSMUST00000109783 4930404H24Rik protein_coding Interval_145383 chr7 34352034 34352455 + 0 NA intron (ENSMUSG00000066568.12, intron 8 of 9) protein_coding-intron (ENSMUSG00000066568.12, intron 8 of 10) 1251 ENSMUSG00000066568.12 ENSMUSG00000066568 ENSMUST00000206715 Lsm14a protein_coding Interval_86718 chr19 42949855 42950238 + 0 NA intron (ENSMUSG00000074852.4, intron 6 of 8) protein_coding-intron (ENSMUSG00000074852.4, intron 6 of 11) 170936 ENSMUSG00000090235.1 ENSMUSG00000090235 ENSMUST00000160001 Gm16244 processed_transcript Interval_60081 chr15 64686937 64687770 + 0 NA Intergenic Intergenic -53845 ENSMUSG00000115328.1 ENSMUSG00000115328 ENSMUST00000227641 Gm30691 lincRNA Interval_107293 chr3 105495840 105496324 + 0 NA intron (ENSMUSG00000040896.16, intron 2 of 4) protein_coding-intron (ENSMUSG00000040896.16, intron 1 of 6) -6825 ENSMUSG00000105753.1 ENSMUSG00000105753 ENSMUST00000200070 Gm43847 sense_intronic Interval_114678 chr4 83711896 83713463 + 0 NA intron (ENSMUSG00000052407.17, intron 21 of 25) protein_coding-intron (ENSMUSG00000052407.17, intron 21 of 25) 11595 ENSMUSG00000080793.1 ENSMUSG00000080793 ENSMUST00000118595 Cbx3-ps3 processed_pseudogene Interval_2753 chr1 44173477 44174651 + 0 NA intron (ENSMUSG00000026048.16, intron 9 of 13) protein_coding-intron (ENSMUSG00000026048.16, intron 10 of 14) 26320 ENSMUSG00000026048.16 ENSMUSG00000026048 ENSMUST00000155862 Ercc5 protein_coding Interval_9359 chr1 156577942 156578166 + 0 NA intron (ENSMUSG00000026596.13, intron 1 of 2) protein_coding-intron (ENSMUSG00000026596.13, intron 1 of 11) -5054 ENSMUSG00000104293.1 ENSMUSG00000104293 ENSMUST00000195501 Gm38043 TEC Interval_92333 chr2 58942706 58942938 + 0 NA intron (ENSMUSG00000036641.9, intron 10 of 14) protein_coding-intron (ENSMUSG00000036641.9, intron 10 of 14) 16885 ENSMUSG00000082989.1 ENSMUSG00000082989 ENSMUST00000120771 Gm13557 processed_pseudogene Interval_34923 chr12 13516404 13516588 + 0 NA intron (ENSMUSG00000020576.10, intron 2 of 2) protein_coding-intron (ENSMUSG00000020576.10, intron 45 of 51) -8528 ENSMUSG00000096633.1 ENSMUSG00000096633 ENSMUST00000097247 Gm22170 snRNA Interval_98773 chr2 154868798 154871589 + 0 NA intron (ENSMUSG00000027596.10, intron 1 of 4) protein_coding-intron (ENSMUSG00000027596.10, intron 1 of 4) 22589 ENSMUSG00000074656.12 ENSMUSG00000074656 ENSMUST00000135524 Eif2s2 protein_coding Interval_23643 chr11 24049171 24050014 + 0 NA intron (ENSMUSG00000055010.1, intron 2 of 2) protein_coding-intron (ENSMUSG00000055010.1, intron 2 of 2) 25462 ENSMUSG00000055010.1 ENSMUSG00000055010 ENSMUST00000068360 A830031A19Rik protein_coding Interval_32442 chr11 107559214 107559414 + 0 NA intron (ENSMUSG00000020721.16, intron 3 of 4) protein_coding-intron (ENSMUSG00000020721.16, intron 2 of 31) -10941 ENSMUSG00000059706.4 ENSMUSG00000059706 ENSMUST00000147445 A830035A12Rik processed_transcript Interval_62795 chr15 97048137 97050666 + 0 NA intron (ENSMUSG00000022464.14, intron 1 of 15) protein_coding-intron (ENSMUSG00000022464.14, intron 1 of 15) -29450 ENSMUSG00000022464.14 ENSMUSG00000022464 ENSMUST00000230907 Slc38a4 protein_coding Interval_62015 chr15 85896250 85897279 + 0 NA TTS (ENSMUSG00000022386.12) protein_coding-TTS (ENSMUSG00000022386.12) 5435 ENSMUSG00000016028.11 ENSMUSG00000016028 ENSMUST00000227450 Celsr1 protein_coding Interval_85892 chr19 32785159 32785838 + 0 NA intron (ENSMUSG00000013663.7, intron 2 of 4) protein_coding-intron (ENSMUSG00000013663.7, intron 2 of 8) -25727 ENSMUSG00000013663.7 ENSMUSG00000013663 ENSMUST00000154806 Pten protein_coding Interval_66277 chr16 32821881 32822391 + 0 NA exon (ENSMUSG00000035629.19, exon 19 of 19) protein_coding-exon (ENSMUSG00000035629.19, exon 19 of 19) -11659 ENSMUSG00000094430.2 ENSMUSG00000094430 ENSMUST00000179384 Smbd1 protein_coding Interval_116164 chr4 108318358 108320024 + 0 NA Intergenic Intergenic -3147 ENSMUSG00000081734.1 ENSMUSG00000081734 ENSMUST00000118794 Gm12740 processed_pseudogene Interval_101818 chr3 9699679 9700071 + 0 NA intron (ENSMUSG00000027508.15, intron 6 of 8) protein_coding-intron (ENSMUSG00000027508.15, intron 5 of 7) 43355 ENSMUSG00000103876.1 ENSMUSG00000103876 ENSMUST00000195844 Gm17806 processed_pseudogene Interval_89513 chr2 21381878 21382221 + 0 NA intron (ENSMUSG00000045967.11, intron 1 of 7) protein_coding-intron (ENSMUSG00000045967.11, intron 1 of 10) -12938 ENSMUSG00000085680.1 ENSMUSG00000085680 ENSMUST00000133391 Gm13327 antisense Interval_105122 chr3 81922781 81923861 + 0 NA exon (ENSMUSG00000056023.3, exon 1 of 1) processed_transcript-exon (ENSMUSG00000056023.3, exon 1 of 1) 1077 ENSMUSG00000056023.3 ENSMUSG00000056023 ENSMUST00000069880 Gm9989 processed_transcript Interval_83893 chr19 5399493 5401423 + 0 NA exon (ENSMUSG00000039330.5, exon 3 of 8) protein_coding-exon (ENSMUSG00000039330.5, exon 3 of 8) 2068 ENSMUSG00000039330.5 ENSMUSG00000039330 ENSMUST00000235569 Tsga10ip protein_coding Interval_174197 chrX 139372590 139372780 + 0 NA Intergenic Intergenic 14217 ENSMUSG00000084205.1 ENSMUSG00000084205 ENSMUST00000122380 Gm8061 processed_pseudogene Interval_34835 chr12 12396082 12396676 + 0 NA Intergenic Intergenic -3764 ENSMUSG00000114136.1 ENSMUSG00000114136 ENSMUST00000220545 4921511I17Rik antisense Interval_143214 chr7 4526246 4527370 + 0 NA exon (ENSMUSG00000085725.2, exon 1 of 2) antisense-exon (ENSMUSG00000085725.2, exon 1 of 2) 174 ENSMUSG00000085725.2 ENSMUSG00000085725 ENSMUST00000205662 Gm15873 antisense Interval_163093 chr9 15237594 15239615 + 0 NA promoter-TSS (ENSMUSG00000031937.7) protein_coding-promoter-TSS (ENSMUSG00000031937.7) -441 ENSMUSG00000031937.7 ENSMUSG00000031937 ENSMUST00000034413 Vstm5 protein_coding Interval_9633 chr1 160517112 160517346 + 0 NA intron (ENSMUSG00000026721.16, intron 13 of 20) protein_coding-intron (ENSMUSG00000026721.16, intron 13 of 20) 56581 ENSMUSG00000104026.1 ENSMUSG00000104026 ENSMUST00000192582 Gm37212 TEC Interval_149154 chr7 95416933 95418282 + 0 NA Intergenic Intergenic 24850 ENSMUSG00000065875.1 ENSMUSG00000065875 ENSMUST00000083941 Gm25684 snRNA Interval_65808 chr16 29022366 29023357 + 0 NA Intergenic Intergenic -71506 ENSMUSG00000116861.1 ENSMUSG00000116861 ENSMUST00000232466 Gm8253 processed_pseudogene Interval_134740 chr6 31113676 31114051 + 0 NA intron (ENSMUSG00000044471.12, intron 2 of 5) lincRNA-intron (ENSMUSG00000044471.12, intron 3 of 3) -2943 ENSMUSG00000104030.1 ENSMUSG00000104030 ENSMUST00000195672 5330406M23Rik TEC Interval_37224 chr12 61471073 61471663 + 0 NA Intergenic Intergenic 12858 ENSMUSG00000100476.1 ENSMUSG00000100476 ENSMUST00000190988 Nanog-ps2 processed_pseudogene Interval_167739 chr9 72421449 72423129 + 0 NA Intergenic Intergenic 9354 ENSMUSG00000099019.1 ENSMUSG00000099019 ENSMUST00000183926 Gm27254 processed_pseudogene Interval_35913 chr12 31869117 31869509 + 0 NA intron (ENSMUSG00000035933.5, intron 14 of 22) protein_coding-intron (ENSMUSG00000035933.5, intron 14 of 22) 10855 ENSMUSG00000088242.1 ENSMUSG00000088242 ENSMUST00000157617 Gm25913 scaRNA Interval_162244 chr8 126398147 126398910 + 0 NA Intergenic Intergenic -24000 ENSMUSG00000051671.7 ENSMUSG00000051671 ENSMUST00000211868 Coa6 protein_coding Interval_162263 chr8 126518454 126519048 + 0 NA Intergenic Intergenic -42339 ENSMUSG00000074026.3 ENSMUSG00000074026 ENSMUST00000098307 Gm6091 processed_pseudogene Interval_109368 chr3 140483775 140484217 + 0 NA Intergenic Intergenic 23271 ENSMUSG00000104596.1 ENSMUSG00000104596 ENSMUST00000196082 Gm19080 processed_pseudogene Interval_118514 chr4 132198134 132198857 + 0 NA intron (ENSMUSG00000040025.17, intron 3 of 3) protein_coding-intron (ENSMUSG00000040025.17, intron 3 of 3) 12314 ENSMUSG00000040025.17 ENSMUSG00000040025 ENSMUST00000102570 Ythdf2 protein_coding Interval_243 KZ289068.1 278969 279637 + 0 NA NA NA NA NA Interval_37027 chr12 56559705 56560222 + 0 NA intron (ENSMUSG00000098172.7, intron 2 of 2) antisense-intron (ENSMUSG00000098172.7, intron 2 of 2) 8504 ENSMUSG00000077177.1 ENSMUSG00000077177 ENSMUST00000103989 Gm25760 snoRNA Interval_78418 chr18 12692665 12693094 + 0 NA intron (ENSMUSG00000024424.15, intron 4 of 7) protein_coding-intron (ENSMUSG00000024424.15, intron 4 of 13) -21932 ENSMUSG00000087950.1 ENSMUSG00000087950 ENSMUST00000157325 Mir1948 miRNA Interval_70315 chr17 8423080 8423945 + 0 NA TTS (ENSMUSG00000058159.14) protein_coding-TTS (ENSMUSG00000058159.14) -11899 ENSMUSG00000062327.10 ENSMUSG00000062327 ENSMUST00000177118 T protein_coding Interval_154098 chr8 12671395 12672753 + 0 NA promoter-TSS (ENSMUSG00000054910.5) processed_transcript-promoter-TSS (ENSMUSG00000054910.5) -115 ENSMUSG00000000759.14 ENSMUSG00000000759 ENSMUST00000172056 Tubgcp3 protein_coding Interval_164096 chr9 31449246 31450257 + 0 NA intron (ENSMUSG00000041737.8, intron 1 of 5) protein_coding-intron (ENSMUSG00000041737.8, intron 1 of 5) -9984 ENSMUSG00000111468.1 ENSMUSG00000111468 ENSMUST00000213948 5033425B01Rik TEC Interval_148427 chr7 81188929 81189588 + 0 NA Intergenic Intergenic -15752 ENSMUSG00000109323.1 ENSMUSG00000109323 ENSMUST00000207652 Gm44968 lincRNA Interval_7798 chr1 133762891 133763831 + 0 NA intron (ENSMUSG00000026463.17, intron 1 of 20) protein_coding-intron (ENSMUSG00000026463.17, intron 2 of 2) 15060 ENSMUSG00000102509.1 ENSMUSG00000102509 ENSMUST00000193173 Gm37368 TEC Interval_52219 chr14 40776874 40777084 + 0 NA Intergenic Intergenic 29752 ENSMUSG00000114933.1 ENSMUSG00000114933 ENSMUST00000225171 Gm48040 processed_pseudogene Interval_18050 chr10 81551494 81552088 + 0 NA Intergenic Intergenic -7697 ENSMUSG00000054452.10 ENSMUSG00000054452 ENSMUST00000218432 Tle5 protein_coding Interval_8684 chr1 147699905 147700080 + 0 NA Intergenic Intergenic 184266 ENSMUSG00000104331.1 ENSMUSG00000104331 ENSMUST00000194803 Gm38284 TEC Interval_74008 chr17 46018758 46019170 + 0 NA intron (ENSMUSG00000023951.18, intron 2 of 2) protein_coding-intron (ENSMUSG00000023951.18, intron 5 of 5) 5900 ENSMUSG00000023951.18 ENSMUSG00000023951 ENSMUST00000146149 Vegfa protein_coding Interval_98005 chr2 146605773 146605983 + 0 NA Intergenic Intergenic 62947 ENSMUSG00000085796.1 ENSMUSG00000085796 ENSMUST00000147212 4933406D12Rik lincRNA Interval_111052 chr4 11516550 11517237 + 0 NA exon (ENSMUSG00000040720.15, exon 9 of 25) protein_coding-exon (ENSMUSG00000040720.15, exon 9 of 25) -14054 ENSMUSG00000086625.1 ENSMUSG00000086625 ENSMUST00000141538 Gm11831 antisense Interval_6520 chr1 114078750 114079079 + 0 NA Intergenic Intergenic -114780 ENSMUSG00000097648.1 ENSMUSG00000097648 ENSMUST00000180837 9330185C12Rik lincRNA Interval_23125 chr11 20063985 20065166 + 0 NA exon (ENSMUSG00000020152.7, exon 9 of 9) protein_coding-exon (ENSMUSG00000020152.7, exon 9 of 9) 48334 ENSMUSG00000020152.7 ENSMUSG00000020152 ENSMUST00000134779 Actr2 protein_coding Interval_51033 chr14 21682549 21683224 + 0 NA intron (ENSMUSG00000063821.6, intron 3 of 3) protein_coding-intron (ENSMUSG00000063821.6, intron 3 of 3) 20216 ENSMUSG00000063821.6 ENSMUSG00000063821 ENSMUST00000224735 Dupd1 protein_coding Interval_139011 chr6 94201762 94201984 + 0 NA intron (ENSMUSG00000045095.16, intron 2 of 2) protein_coding-intron (ENSMUSG00000045095.16, intron 1 of 21) 122161 ENSMUSG00000107545.1 ENSMUSG00000107545 ENSMUST00000204466 Gm44307 processed_pseudogene Interval_155411 chr8 33376905 33377236 + 0 NA intron (ENSMUSG00000031583.13, intron 1 of 8) protein_coding-intron (ENSMUSG00000031583.13, intron 1 of 33) -9255 ENSMUSG00000049184.6 ENSMUSG00000049184 ENSMUST00000078058 Purg protein_coding Interval_135517 chr6 39848666 39849534 + 0 NA Intergenic Intergenic -4805 ENSMUSG00000106827.1 ENSMUSG00000106827 ENSMUST00000201178 Gm7556 processed_pseudogene Interval_35430 chr12 21613899 21614797 + 0 NA Intergenic Intergenic 16102 ENSMUSG00000113498.1 ENSMUSG00000113498 ENSMUST00000220842 Gm4036 unprocessed_pseudogene Interval_121479 chr4 156064004 156064394 + 0 NA Intergenic Intergenic -4397 ENSMUSG00000086549.1 ENSMUSG00000086549 ENSMUST00000138361 Gm13648 processed_transcript Interval_19592 chr10 104650659 104651568 + 0 NA Intergenic Intergenic -179906 ENSMUSG00000089182.1 ENSMUSG00000089182 ENSMUST00000158557 Gm22945 snRNA Interval_146263 chr7 45037835 45038668 + 0 NA intron (ENSMUSG00000046574.8, intron 6 of 13) protein_coding-intron (ENSMUSG00000046574.8, intron 6 of 13) -3857 ENSMUSG00000046574.8 ENSMUSG00000046574 ENSMUST00000210410 Prr12 protein_coding Interval_65998 chr16 30800530 30800952 + 0 NA Intergenic Intergenic -7486 ENSMUSG00000116570.1 ENSMUSG00000116570 ENSMUST00000231445 Gm49754 lincRNA Interval_152630 chr7 135551390 135551613 + 0 NA intron (ENSMUSG00000041836.10, intron 1 of 19) protein_coding-intron (ENSMUSG00000041836.10, intron 1 of 20) -14661 ENSMUSG00000088141.1 ENSMUSG00000088141 ENSMUST00000157516 Mir1962 miRNA Interval_142237 chr6 139592115 139592742 + 0 NA intron (ENSMUSG00000030228.18, intron 2 of 6) protein_coding-intron (ENSMUSG00000030228.18, intron 1 of 1) -15223 ENSMUSG00000108147.1 ENSMUSG00000108147 ENSMUST00000203475 4930443G03Rik TEC Interval_72395 chr17 29586586 29587315 + 0 NA TTS (ENSMUSG00000089900.2) antisense-TTS (ENSMUSG00000089900.2) -8588 ENSMUSG00000098764.1 ENSMUSG00000098764 ENSMUST00000183866 Mir7667 miRNA Interval_117449 chr4 123738342 123738641 + 0 NA TTS (ENSMUSG00000023075.9) protein_coding-TTS (ENSMUSG00000023075.9) 11740 ENSMUSG00000023075.9 ENSMUSG00000023075 ENSMUST00000153472 Akirin1 protein_coding Interval_89343 chr2 19568326 19568562 + 0 NA Intergenic Intergenic -14530 ENSMUSG00000026734.9 ENSMUSG00000026734 ENSMUST00000131199 4921504E06Rik protein_coding Interval_74921 chr17 57311409 57312235 + 0 NA promoter-TSS (ENSMUSG00000034116.17) protein_coding-promoter-TSS (ENSMUSG00000034116.17) 8758 ENSMUSG00000034116.17 ENSMUSG00000034116 ENSMUST00000008847 Vav1 protein_coding Interval_93187 chr2 70959819 70960808 + 0 NA Intergenic Intergenic 21871 ENSMUSG00000041975.17 ENSMUSG00000041975 ENSMUST00000124273 Mettl8 protein_coding Interval_115364 chr4 98194748 98195772 + 0 NA Intergenic Intergenic 40030 ENSMUSG00000082388.1 ENSMUSG00000082388 ENSMUST00000121092 Gm12692 processed_pseudogene Interval_155073 chr8 26157647 26159201 + 0 NA promoter-TSS (ENSMUSG00000037214.12) protein_coding-promoter-TSS (ENSMUSG00000037214.12) -369 ENSMUSG00000037214.12 ENSMUSG00000037214 ENSMUST00000209926 Thap1 protein_coding Interval_82949 chr18 79932514 79933323 + 0 NA Intergenic Intergenic -1414 ENSMUSG00000117669.1 ENSMUSG00000117669 ENSMUST00000235834 Gm5509 processed_pseudogene Interval_67964 chr16 61715909 61716120 + 0 NA Intergenic Intergenic 255052 ENSMUSG00000090448.1 ENSMUSG00000090448 ENSMUST00000169031 Gm17192 processed_pseudogene Interval_2052 chr1 36131989 36132774 + 0 NA intron (ENSMUSG00000102202.1, intron 1 of 3) lincRNA-intron (ENSMUSG00000102202.1, intron 1 of 3) 339 ENSMUSG00000102202.1 ENSMUSG00000102202 ENSMUST00000193983 Gm33280 lincRNA Interval_24894 chr11 40927088 40927805 + 0 NA Intergenic Intergenic 107677 ENSMUSG00000065916.1 ENSMUSG00000065916 ENSMUST00000083982 Gm24446 snRNA Interval_137800 chr6 82613000 82614294 + 0 NA Intergenic Intergenic -66485 ENSMUSG00000107453.1 ENSMUSG00000107453 ENSMUST00000203711 Gm44145 antisense Interval_169609 chr9 99423840 99424507 + 0 NA intron (ENSMUSG00000032470.17, intron 1 of 5) protein_coding-intron (ENSMUSG00000032470.17, intron 1 of 5) -27302 ENSMUSG00000046242.8 ENSMUSG00000046242 ENSMUST00000056103 Nme9 protein_coding Interval_14104 chr10 27172429 27173222 + 0 NA intron (ENSMUSG00000019899.17, intron 29 of 64) protein_coding-intron (ENSMUSG00000019899.17, intron 29 of 64) 39429 ENSMUSG00000019899.17 ENSMUSG00000019899 ENSMUST00000187535 Lama2 protein_coding Interval_108027 chr3 120271165 120271360 + 0 NA Intergenic Intergenic 46727 ENSMUSG00000065684.1 ENSMUSG00000065684 ENSMUST00000083750 Gm23733 snRNA Interval_173987 chrX 122724479 122725799 + 0 NA Intergenic Intergenic -43730 ENSMUSG00000083490.1 ENSMUSG00000083490 ENSMUST00000119309 Gm14940 processed_pseudogene Interval_146261 chr7 45027741 45027937 + 0 NA TTS (ENSMUSG00000046574.8) protein_coding-TTS (ENSMUSG00000046574.8) 6555 ENSMUSG00000046574.8 ENSMUSG00000046574 ENSMUST00000210410 Prr12 protein_coding Interval_55233 chr14 79524333 79524609 + 0 NA intron (ENSMUSG00000036461.16, intron 1 of 7) protein_coding-intron (ENSMUSG00000036461.16, intron 1 of 8) 8785 ENSMUSG00000036461.16 ENSMUSG00000036461 ENSMUST00000227104 Elf1 protein_coding Interval_138443 chr6 88235836 88236809 + 0 NA intron (ENSMUSG00000048206.6, intron 2 of 3) protein_coding-intron (ENSMUSG00000048206.6, intron 2 of 3) -12683 ENSMUSG00000047046.8 ENSMUSG00000047046 ENSMUST00000156018 1700031F10Rik antisense Interval_126207 chr5 82343050 82343287 + 0 NA Intergenic Intergenic 6317 ENSMUSG00000106926.1 ENSMUSG00000106926 ENSMUST00000200912 Rpl7-ps7 processed_pseudogene Interval_30459 chr11 94498370 94498624 + 0 NA promoter-TSS (ENSMUSG00000010080.15) protein_coding-promoter-TSS (ENSMUSG00000010080.15) 623 ENSMUSG00000010080.15 ENSMUSG00000010080 ENSMUST00000150526 Epn3 protein_coding Interval_15936 chr10 59459597 59459940 + 0 NA intron (ENSMUSG00000009647.13, intron 4 of 7) protein_coding-intron (ENSMUSG00000009647.13, intron 4 of 7) -28682 ENSMUSG00000009654.4 ENSMUSG00000009654 ENSMUST00000162493 Oit3 protein_coding Interval_135594 chr6 41136458 41137995 + 0 NA Intergenic Intergenic 2081 ENSMUSG00000076471.3 ENSMUSG00000076471 ENSMUST00000103272 Trbv14 TR_V_gene Interval_46069 chr13 60745916 60746267 + 0 NA intron (ENSMUSG00000021559.14, intron 19 of 26) protein_coding-intron (ENSMUSG00000021559.14, intron 19 of 26) -25584 ENSMUSG00000096874.2 ENSMUSG00000096874 ENSMUST00000078515 Gm10312 processed_pseudogene Interval_120439 chr4 148632132 148634255 + 0 NA Intergenic Intergenic -6435 ENSMUSG00000041459.15 ENSMUSG00000041459 ENSMUST00000190478 Tardbp protein_coding Interval_74881 chr17 57047045 57048116 + 0 NA TTS (ENSMUSG00000091390.1) antisense-TTS (ENSMUSG00000091390.1) 5805 ENSMUSG00000091390.1 ENSMUSG00000091390 ENSMUST00000169146 Gm17168 antisense Interval_37221 chr12 61268825 61269145 + 0 NA Intergenic Intergenic 5154 ENSMUSG00000114039.1 ENSMUSG00000114039 ENSMUST00000222708 Gm48305 processed_pseudogene Interval_102350 chr3 22093096 22093801 + 0 NA intron (ENSMUSG00000027630.13, intron 2 of 16) protein_coding-intron (ENSMUSG00000027630.13, intron 1 of 15) -12333 ENSMUSG00000103293.1 ENSMUSG00000103293 ENSMUST00000195073 Gm5842 processed_pseudogene Interval_118569 chr4 132556379 132557045 + 0 NA Intergenic Intergenic -7355 ENSMUSG00000056529.7 ENSMUSG00000056529 ENSMUST00000070690 Ptafr protein_coding Interval_36885 chr12 54962094 54962534 + 0 NA promoter-TSS (ENSMUSG00000098026.2) processed_pseudogene-promoter-TSS (ENSMUSG00000098026.2) -750 ENSMUSG00000098026.2 ENSMUSG00000098026 ENSMUST00000182658 Gm27014 processed_pseudogene Interval_63832 chr16 3849967 3850229 + 0 NA intron (ENSMUSG00000054939.6, intron 2 of 2) protein_coding-intron (ENSMUSG00000054939.6, intron 2 of 2) 2830 ENSMUSG00000054939.6 ENSMUSG00000054939 ENSMUST00000041778 Zfp174 protein_coding Interval_118824 chr4 133916761 133917095 + 0 NA Intergenic Intergenic -30645 ENSMUSG00000003644.17 ENSMUSG00000003644 ENSMUST00000173961 Rps6ka1 protein_coding Interval_114682 chr4 83724753 83725762 + 0 NA intron (ENSMUSG00000052407.17, intron 21 of 25) protein_coding-intron (ENSMUSG00000052407.17, intron 21 of 25) -18420 ENSMUSG00000097942.1 ENSMUSG00000097942 ENSMUST00000182894 Gm26968 sense_intronic Interval_119480 chr4 137851669 137851882 + 0 NA Intergenic Intergenic 32162 ENSMUSG00000085823.7 ENSMUSG00000085823 ENSMUST00000156022 Gm13012 antisense Interval_171209 chr9 115234791 115235158 + 0 NA Intergenic Intergenic 34576 ENSMUSG00000097967.1 ENSMUSG00000097967 ENSMUST00000182789 Gm27002 sense_intronic Interval_24875 chr11 40691672 40693201 + 0 NA intron (ENSMUSG00000042032.13, intron 1 of 1) protein_coding-intron (ENSMUSG00000042032.13, intron 1 of 6) -6619 ENSMUSG00000042032.13 ENSMUSG00000042032 ENSMUST00000135617 Mat2b protein_coding Interval_47146 chr13 76296022 76296903 + 0 NA intron (ENSMUSG00000109228.2, intron 1 of 10) protein_coding-intron (ENSMUSG00000109228.2, intron 1 of 10) 24817 ENSMUSG00000092732.1 ENSMUSG00000092732 ENSMUST00000174991 Gm24025 miRNA Interval_97512 chr2 138273765 138274095 + 0 NA intron (ENSMUSG00000062098.11, intron 1 of 3) protein_coding-intron (ENSMUSG00000062098.11, intron 1 of 4) 17268 ENSMUSG00000062098.11 ENSMUSG00000062098 ENSMUST00000075410 Btbd3 protein_coding Interval_159666 chr8 96363167 96363452 + 0 NA Intergenic Intergenic 40553 ENSMUSG00000110633.1 ENSMUSG00000110633 ENSMUST00000212119 Gm32122 lincRNA Interval_140171 chr6 114987826 114988407 + 0 NA Intergenic Intergenic 49739 ENSMUSG00000030316.13 ENSMUSG00000030316 ENSMUST00000144445 Tamm41 protein_coding Interval_85609 chr19 29058082 29058529 + 0 NA Intergenic Intergenic -9042 ENSMUSG00000118038.1 ENSMUSG00000118038 ENSMUST00000235636 Gm9895 lincRNA Interval_113319 chr4 53445256 53445625 + 0 NA intron (ENSMUSG00000028412.17, intron 1 of 3) protein_coding-intron (ENSMUSG00000028412.17, intron 1 of 15) 4769 ENSMUSG00000028412.17 ENSMUSG00000028412 ENSMUST00000133582 Slc44a1 protein_coding Interval_115018 chr4 88516131 88516327 + 0 NA Intergenic Intergenic 6545 ENSMUSG00000048806.4 ENSMUSG00000048806 ENSMUST00000055671 Ifnb1 protein_coding Interval_44968 chr13 51022164 51023979 + 0 NA Intergenic Intergenic 8985 ENSMUSG00000084609.2 ENSMUSG00000084609 ENSMUST00000122660 Gm22199 misc_RNA Interval_27770 chr11 69880613 69881671 + 0 NA promoter-TSS (ENSMUSG00000046731.5) protein_coding-promoter-TSS (ENSMUSG00000046731.5) -157 ENSMUSG00000046731.5 ENSMUSG00000046731 ENSMUST00000238978 Kctd11 protein_coding Interval_64957 chr16 17518444 17518677 + 0 NA exon (ENSMUSG00000022761.12, exon 7 of 21) protein_coding-exon (ENSMUSG00000022761.12, exon 7 of 21) 9527 ENSMUSG00000022761.12 ENSMUSG00000022761 ENSMUST00000231746 Lztr1 protein_coding Interval_99030 chr2 156747690 156748813 + 0 NA exon (ENSMUSG00000061689.15, exon 2 of 5) protein_coding-exon (ENSMUSG00000061689.15, exon 2 of 5) 27191 ENSMUSG00000061689.15 ENSMUSG00000061689 ENSMUST00000123730 Dlgap4 protein_coding Interval_150867 chr7 116039259 116040743 + 0 NA intron (ENSMUSG00000030663.12, intron 1 of 7) protein_coding-intron (ENSMUSG00000030663.12, intron 1 of 4) 289 ENSMUSG00000030663.12 ENSMUSG00000030663 ENSMUST00000151254 1110004F10Rik protein_coding Interval_27307 chr11 65820313 65821429 + 0 NA intron (ENSMUSG00000018347.16, intron 4 of 6) protein_coding-intron (ENSMUSG00000018347.16, intron 5 of 7) 13696 ENSMUSG00000018347.16 ENSMUSG00000018347 ENSMUST00000018491 Zkscan6 protein_coding Interval_153643 chr8 4231144 4231396 + 0 NA promoter-TSS (ENSMUSG00000046589.7) protein_coding-promoter-TSS (ENSMUSG00000046589.7) 63 ENSMUSG00000046589.7 ENSMUSG00000046589 ENSMUST00000207770 Lrrc8e protein_coding Interval_53273 chr14 55727758 55728505 + 0 NA Intergenic Intergenic -5950 ENSMUSG00000040472.15 ENSMUSG00000040472 ENSMUST00000227132 Rabggta protein_coding Interval_49562 chr13 112979356 112979560 + 0 NA Intergenic Intergenic -8346 ENSMUSG00000042417.5 ENSMUSG00000042417 ENSMUST00000224100 Ccno protein_coding Interval_46812 chr13 71008605 71008824 + 0 NA Intergenic Intergenic 63012 ENSMUSG00000102303.1 ENSMUSG00000102303 ENSMUST00000194509 Gm38191 TEC Interval_16176 chr10 61231171 61231717 + 0 NA intron (ENSMUSG00000059901.12, intron 4 of 21) protein_coding-intron (ENSMUSG00000059901.12, intron 4 of 21) 41798 ENSMUSG00000059901.12 ENSMUSG00000059901 ENSMUST00000120336 Adamts14 protein_coding Interval_82450 chr18 74107658 74108377 + 0 NA Intergenic Intergenic 42915 ENSMUSG00000053861.1 ENSMUSG00000053861 ENSMUST00000066583 Gm9925 protein_coding Interval_165256 chr9 45815361 45816030 + 0 NA intron (ENSMUSG00000043987.18, intron 2 of 31) protein_coding-intron (ENSMUSG00000043987.18, intron 3 of 29) -16635 ENSMUSG00000110997.1 ENSMUSG00000110997 ENSMUST00000215216 2610028D06Rik TEC Interval_147669 chr7 71455857 71457332 + 0 NA Intergenic Intergenic 105143 ENSMUSG00000099558.1 ENSMUSG00000099558 ENSMUST00000190004 Gm29295 lincRNA Interval_67736 chr16 56701735 56702133 + 0 NA intron (ENSMUSG00000022757.19, intron 2 of 6) protein_coding-intron (ENSMUSG00000022757.19, intron 4 of 7) 15248 ENSMUSG00000022757.19 ENSMUSG00000022757 ENSMUST00000141404 Tfg protein_coding Interval_58206 chr15 30745799 30746277 + 0 NA intron (ENSMUSG00000022240.10, intron 1 of 2) protein_coding-intron (ENSMUSG00000022240.10, intron 9 of 22) -119417 ENSMUSG00000115337.1 ENSMUSG00000115337 ENSMUST00000228499 4930570B17Rik antisense Interval_327 chr1 3997820 3998760 + 0 NA Intergenic Intergenic -12075 ENSMUSG00000102343.1 ENSMUSG00000102343 ENSMUST00000192427 Gm37381 lincRNA Interval_123354 chr5 31661753 31662121 + 0 NA intron (ENSMUSG00000029136.9, intron 4 of 4) protein_coding-intron (ENSMUSG00000029136.9, intron 4 of 7) 5403 ENSMUSG00000099301.1 ENSMUSG00000099301 ENSMUST00000183932 Mir3473e miRNA Interval_171502 chr9 118881285 118881945 + 0 NA intron (ENSMUSG00000039115.13, intron 2 of 3) protein_coding-intron (ENSMUSG00000039115.13, intron 26 of 27) 9546 ENSMUSG00000039115.13 ENSMUSG00000039115 ENSMUST00000155437 Itga9 protein_coding Interval_36741 chr12 52847666 52848776 + 0 NA intron (ENSMUSG00000061603.8, intron 1 of 11) protein_coding-intron (ENSMUSG00000061603.8, intron 2 of 13) 52385 ENSMUSG00000061603.8 ENSMUSG00000061603 ENSMUST00000219786 Akap6 protein_coding Interval_81165 chr18 55446380 55447396 + 0 NA Intergenic Intergenic 70226 ENSMUSG00000103555.1 ENSMUSG00000103555 ENSMUST00000192601 Gm37337 TEC Interval_16583 chr10 64529024 64529387 + 0 NA intron (ENSMUSG00000060843.11, intron 11 of 17) protein_coding-intron (ENSMUSG00000060843.11, intron 10 of 16) -224461 ENSMUSG00000089003.1 ENSMUSG00000089003 ENSMUST00000158378 Gm23854 snRNA Interval_114602 chr4 83003208 83004631 + 0 NA intron (ENSMUSG00000059049.14, intron 7 of 36) protein_coding-intron (ENSMUSG00000059049.14, intron 6 of 35) 48248 ENSMUSG00000059049.14 ENSMUSG00000059049 ENSMUST00000131102 Frem1 protein_coding Interval_11947 chr1 187391432 187392460 + 0 NA Intergenic Intergenic -14477 ENSMUSG00000104245.1 ENSMUSG00000104245 ENSMUST00000192285 Gm38155 antisense Interval_45763 chr13 57845324 57845608 + 0 NA intron (ENSMUSG00000056222.15, intron 2 of 10) protein_coding-intron (ENSMUSG00000056222.15, intron 1 of 9) 62866 ENSMUSG00000056222.15 ENSMUSG00000056222 ENSMUST00000185905 Spock1 protein_coding Interval_42108 chr13 8849487 8849831 + 0 NA promoter-TSS (ENSMUSG00000021147.17) protein_coding-promoter-TSS (ENSMUSG00000021147.17) -2954 ENSMUSG00000021147.17 ENSMUSG00000021147 ENSMUST00000177404 Wdr37 protein_coding Interval_34287 chr12 3098267 3098796 + 0 NA Intergenic Intergenic 15864 ENSMUSG00000092168.1 ENSMUSG00000092168 ENSMUST00000168738 Gm9075 unprocessed_pseudogene Interval_56225 chr14 113786258 113786443 + 0 NA Intergenic Intergenic -115677 ENSMUSG00000115269.1 ENSMUSG00000115269 ENSMUST00000226804 Gm5209 processed_pseudogene Interval_53486 chr14 57797543 57799022 + 0 NA promoter-TSS (ENSMUSG00000021963.17) protein_coding-promoter-TSS (ENSMUSG00000021963.17) -142 ENSMUSG00000092784.1 ENSMUSG00000092784 ENSMUST00000175043 Mir3077 miRNA Interval_137900 chr6 83234228 83234611 + 0 NA intron (ENSMUSG00000068323.12, intron 3 of 26) protein_coding-intron (ENSMUSG00000068323.12, intron 3 of 26) 39876 ENSMUSG00000031865.16 ENSMUSG00000031865 ENSMUST00000153793 Dctn1 protein_coding Interval_27308 chr11 65852224 65852851 + 0 NA intron (ENSMUSG00000056752.16, intron 25 of 30) protein_coding-intron (ENSMUSG00000056752.16, intron 63 of 68) 45362 ENSMUSG00000018347.16 ENSMUSG00000018347 ENSMUST00000018491 Zkscan6 protein_coding Interval_136514 chr6 55084625 55085159 + 0 NA Intergenic Intergenic 33021 ENSMUSG00000003476.16 ENSMUSG00000003476 ENSMUST00000169777 Crhr2 protein_coding Interval_353 chr1 4471090 4472357 + 0 NA Intergenic Intergenic 25034 ENSMUSG00000025902.13 ENSMUSG00000025902 ENSMUST00000192913 Sox17 protein_coding Interval_121210 chr4 154081453 154082827 + 0 NA intron (ENSMUSG00000029026.17, intron 3 of 13) protein_coding-intron (ENSMUSG00000029026.17, intron 1 of 9) -11339 ENSMUSG00000087071.1 ENSMUSG00000087071 ENSMUST00000143429 Trp73os antisense Interval_97675 chr2 142631200 142631579 + 0 NA intron (ENSMUSG00000038844.10, intron 26 of 26) protein_coding-intron (ENSMUSG00000038844.10, intron 25 of 25) 54461 ENSMUSG00000083215.3 ENSMUSG00000083215 ENSMUST00000119377 Rbmx2-ps processed_pseudogene Interval_32394 chr11 107331982 107332289 + 0 NA intron (ENSMUSG00000040430.18, intron 1 of 2) protein_coding-intron (ENSMUSG00000040430.18, intron 1 of 7) 1427 ENSMUSG00000081995.1 ENSMUSG00000081995 ENSMUST00000119399 Gm11719 processed_pseudogene Interval_93970 chr2 80315014 80316278 + 0 NA exon (ENSMUSG00000027006.13, exon 1 of 23) protein_coding-exon (ENSMUSG00000027006.13, exon 1 of 23) 23174 ENSMUSG00000050114.7 ENSMUSG00000050114 ENSMUST00000057072 Prdx6b protein_coding Interval_117106 chr4 119578967 119579291 + 0 NA intron (ENSMUSG00000032998.16, intron 3 of 4) protein_coding-intron (ENSMUSG00000032998.16, intron 3 of 12) -25071 ENSMUSG00000081678.1 ENSMUSG00000081678 ENSMUST00000119396 Gm12959 processed_pseudogene Interval_55423 chr14 87086704 87089236 + 0 NA intron (ENSMUSG00000022021.14, intron 3 of 3) protein_coding-intron (ENSMUSG00000022021.14, intron 3 of 27) 53265 ENSMUSG00000022021.14 ENSMUSG00000022021 ENSMUST00000226134 Diaph3 protein_coding Interval_3103 chr1 53352246 53353076 + 0 NA promoter-TSS (ENSMUSG00000026095.15) protein_coding-promoter-TSS (ENSMUSG00000026095.15) 6 ENSMUSG00000099913.1 ENSMUSG00000099913 ENSMUST00000144660 Gm28551 protein_coding Interval_144990 chr7 29301153 29301542 + 0 NA Intergenic Intergenic 12039 ENSMUSG00000037166.5 ENSMUSG00000037166 ENSMUST00000048187 Ppp1r14a protein_coding Interval_55238 chr14 79562681 79563339 + 0 NA promoter-TSS (ENSMUSG00000093684.2) miRNA-promoter-TSS (ENSMUSG00000093684.2) -718 ENSMUSG00000093684.2 ENSMUSG00000093684 ENSMUST00000176930 Gm27857 miRNA Interval_40419 chr12 104757790 104758643 + 0 NA Intergenic Intergenic -36164 ENSMUSG00000041415.10 ENSMUSG00000041415 ENSMUST00000222002 Dicer1 protein_coding Interval_80696 chr18 46403248 46403942 + 0 NA intron (ENSMUSG00000118002.1, intron 2 of 2) lincRNA-intron (ENSMUSG00000118002.1, intron 2 of 2) 23448 ENSMUSG00000118002.1 ENSMUSG00000118002 ENSMUST00000237447 Gm4107 lincRNA Interval_136548 chr6 55457693 55458351 + 0 NA intron (ENSMUSG00000029778.12, intron 1 of 1) protein_coding-intron (ENSMUSG00000029778.12, intron 1 of 16) -2214 ENSMUSG00000029778.12 ENSMUSG00000029778 ENSMUST00000165786 Adcyap1r1 protein_coding Interval_69958 chr17 3505340 3507383 + 0 NA intron (ENSMUSG00000023800.15, intron 3 of 5) protein_coding-intron (ENSMUSG00000023800.15, intron 17 of 26) 24153 ENSMUSG00000023800.15 ENSMUSG00000023800 ENSMUST00000226434 Tiam2 protein_coding Interval_52232 chr14 40902356 40903513 + 0 NA Intergenic Intergenic -9668 ENSMUSG00000037833.14 ENSMUSG00000037833 ENSMUST00000225854 Sh2d4b protein_coding Interval_25491 chr11 49194291 49195098 + 0 NA Intergenic Intergenic -7657 ENSMUSG00000040283.14 ENSMUSG00000040283 ENSMUST00000128462 Btnl9 protein_coding Interval_29077 chr11 80185319 80186137 + 0 NA intron (ENSMUSG00000020707.6, intron 1 of 2) protein_coding-intron (ENSMUSG00000020707.6, intron 1 of 4) 1505 ENSMUSG00000020707.6 ENSMUSG00000020707 ENSMUST00000134909 Rnf135 protein_coding Interval_7512 chr1 131927920 131928516 + 0 NA promoter-TSS (ENSMUSG00000026434.12) protein_coding-promoter-TSS (ENSMUSG00000026434.12) 4752 ENSMUSG00000103975.1 ENSMUSG00000103975 ENSMUST00000195496 Gm37676 TEC Interval_105839 chr3 89647101 89648219 + 0 NA intron (ENSMUSG00000000794.9, intron 4 of 7) protein_coding-intron (ENSMUSG00000000794.9, intron 4 of 7) -14858 ENSMUSG00000000794.9 ENSMUSG00000000794 ENSMUST00000124584 Kcnn3 protein_coding Interval_38784 chr12 82325298 82326251 + 0 NA intron (ENSMUSG00000042700.16, intron 2 of 21) protein_coding-intron (ENSMUSG00000042700.16, intron 1 of 20) 156298 ENSMUSG00000042700.16 ENSMUSG00000042700 ENSMUST00000221327 Sipa1l1 protein_coding Interval_46095 chr13 61643118 61643520 + 0 NA Intergenic Intergenic -11984 ENSMUSG00000113295.1 ENSMUSG00000113295 ENSMUST00000222397 Gm49357 lincRNA Interval_128867 chr5 115731009 115733078 + 0 NA promoter-TSS (ENSMUSG00000041609.16) protein_coding-promoter-TSS (ENSMUSG00000041609.16) 70116 ENSMUSG00000083833.4 ENSMUSG00000083833 ENSMUST00000118829 Gm13841 processed_pseudogene Interval_127587 chr5 105635928 105637500 + 0 NA Intergenic Intergenic 56274 ENSMUSG00000085771.1 ENSMUSG00000085771 ENSMUST00000150195 C230066G23Rik sense_intronic Interval_29408 chr11 83801112 83801295 + 0 NA TTS (ENSMUSG00000081342.1) processed_pseudogene-TTS (ENSMUSG00000081342.1) 739 ENSMUSG00000081342.1 ENSMUSG00000081342 ENSMUST00000122379 Gm11434 processed_pseudogene Interval_78725 chr18 19449537 19449722 + 0 NA Intergenic Intergenic -77831 ENSMUSG00000117636.1 ENSMUSG00000117636 ENSMUST00000234485 Gm38432 processed_pseudogene Interval_41405 chr12 113411254 113411465 + 0 NA intron (ENSMUSG00000104213.5, intron 3 of 3) IG_C_gene-intron (ENSMUSG00000104213.5, intron 3 of 3) 4965 ENSMUSG00000104213.5 ENSMUSG00000104213 ENSMUST00000192250 Ighd IG_C_gene Interval_76864 chr17 84607071 84607480 + 0 NA intron (ENSMUSG00000040852.6, intron 25 of 29) protein_coding-intron (ENSMUSG00000040852.6, intron 25 of 29) -17127 ENSMUSG00000065319.1 ENSMUSG00000065319 ENSMUST00000083385 Gm26066 snRNA Interval_19078 chr10 94298923 94299495 + 0 NA promoter-TSS (ENSMUSG00000053420.6) protein_coding-promoter-TSS (ENSMUSG00000053420.6) -506 ENSMUSG00000053420.6 ENSMUSG00000053420 ENSMUST00000065826 Gm4792 protein_coding Interval_130591 chr5 129068132 129068503 + 0 NA Intergenic Intergenic -28440 ENSMUSG00000044017.16 ENSMUSG00000044017 ENSMUST00000156437 Adgrd1 protein_coding Interval_47400 chr13 83523368 83524935 + 0 NA promoter-TSS (ENSMUSG00000005583.16) protein_coding-promoter-TSS (ENSMUSG00000005583.16) -140 ENSMUSG00000005583.16 ENSMUSG00000005583 ENSMUST00000197145 Mef2c protein_coding Interval_8954 chr1 152691559 152692507 + 0 NA intron (ENSMUSG00000026482.13, intron 1 of 18) protein_coding-intron (ENSMUSG00000026482.13, intron 1 of 17) -4532 ENSMUSG00000086145.1 ENSMUSG00000086145 ENSMUST00000139309 Gm15479 sense_intronic Interval_79487 chr18 32280600 32280908 + 0 NA Intergenic Intergenic -12596 ENSMUSG00000089529.1 ENSMUSG00000089529 ENSMUST00000158904 Gm22325 misc_RNA Interval_143373 chr7 6203881 6205153 + 0 NA intron (ENSMUSG00000034660.8, intron 1 of 1) protein_coding-intron (ENSMUSG00000034660.8, intron 2 of 5) 1716 ENSMUSG00000034660.8 ENSMUSG00000034660 ENSMUST00000130076 Galp protein_coding Interval_26558 chr11 58866764 58867889 + 0 NA promoter-TSS (ENSMUSG00000020491.15) protein_coding-promoter-TSS (ENSMUSG00000020491.15) 59 ENSMUSG00000020491.15 ENSMUSG00000020491 ENSMUST00000132570 2810021J22Rik protein_coding Interval_90430 chr2 30399271 30400383 + 0 NA TTS (ENSMUSG00000026853.15) protein_coding-TTS (ENSMUSG00000026853.15) 7387 ENSMUSG00000026856.14 ENSMUSG00000026856 ENSMUST00000152303 Dolpp1 protein_coding Interval_104360 chr3 64039406 64040945 + 0 NA Intergenic Intergenic 15435 ENSMUSG00000090303.3 ENSMUSG00000090303 ENSMUST00000176077 Vmn2r-ps3 unprocessed_pseudogene Interval_171533 chr9 119067758 119068089 + 0 NA exon (ENSMUSG00000038775.14, exon 14 of 18) protein_coding-exon (ENSMUSG00000038775.14, exon 14 of 18) 4468 ENSMUSG00000038775.14 ENSMUSG00000038775 ENSMUST00000151638 Vill protein_coding Interval_21423 chr10 128515617 128517525 + 0 NA exon (ENSMUSG00000025366.8, exon 20 of 31) protein_coding-exon (ENSMUSG00000025366.8, exon 20 of 31) 3735 ENSMUSG00000025366.8 ENSMUSG00000025366 ENSMUST00000220045 Esyt1 protein_coding Interval_129058 chr5 117125617 117126289 + 0 NA promoter-TSS (ENSMUSG00000061288.13) protein_coding-promoter-TSS (ENSMUSG00000061288.13) -4370 ENSMUSG00000107225.1 ENSMUSG00000107225 ENSMUST00000202206 Gm43637 TEC Interval_83020 chr18 80533175 80533952 + 0 NA Intergenic Intergenic 10452 ENSMUSG00000118319.1 ENSMUSG00000118319 ENSMUST00000237325 Gm2176 transcribed_processed_pseudogene Interval_53650 chr14 60588430 60589777 + 0 NA intron (ENSMUSG00000101797.1, intron 2 of 2) lincRNA-intron (ENSMUSG00000101797.1, intron 2 of 2) 7799 ENSMUSG00000114408.1 ENSMUSG00000114408 ENSMUST00000224210 Gm47810 processed_pseudogene Interval_112011 chr4 33224491 33225279 + 0 NA intron (ENSMUSG00000054679.8, intron 2 of 4) protein_coding-intron (ENSMUSG00000054679.8, intron 1 of 2) 15622 ENSMUSG00000054679.8 ENSMUSG00000054679 ENSMUST00000108159 Srsf12 protein_coding Interval_74635 chr17 54010323 54011847 + 0 NA Intergenic Intergenic 8713 ENSMUSG00000104810.1 ENSMUSG00000104810 ENSMUST00000198419 Gm5684 processed_pseudogene Interval_69566 chr16 94323094 94323963 + 0 NA Intergenic Intergenic -4892 ENSMUSG00000022941.8 ENSMUSG00000022941 ENSMUST00000023660 Ripply3 protein_coding Interval_37371 chr12 65593081 65594518 + 0 NA Intergenic Intergenic 27709 ENSMUSG00000077270.1 ENSMUSG00000077270 ENSMUST00000104082 Gm22782 snoRNA Interval_144601 chr7 26822995 26823185 + 0 NA Intergenic Intergenic 6795 ENSMUSG00000049685.8 ENSMUSG00000049685 ENSMUST00000205273 Cyp2g1 protein_coding Interval_160714 chr8 111764980 111766405 + 0 NA Intergenic Intergenic -33556 ENSMUSG00000031955.10 ENSMUSG00000031955 ENSMUST00000212147 Bcar1 protein_coding Interval_101983 chr3 14389699 14390133 + 0 NA Intergenic Intergenic -5516 ENSMUSG00000103626.1 ENSMUSG00000103626 ENSMUST00000195492 Gm37358 processed_pseudogene Interval_120331 chr4 147936090 147938164 + 0 NA promoter-TSS (ENSMUSG00000019055.15) protein_coding-promoter-TSS (ENSMUSG00000019055.15) -3768 ENSMUSG00000044496.6 ENSMUSG00000044496 ENSMUST00000103232 2510039O18Rik protein_coding Interval_23665 chr11 24227183 24227819 + 0 NA Intergenic Intergenic -24877 ENSMUSG00000086117.1 ENSMUSG00000086117 ENSMUST00000149592 Gm12065 lincRNA Interval_139217 chr6 97250518 97251450 + 0 NA intron (ENSMUSG00000044086.8, intron 1 of 2) protein_coding-intron (ENSMUSG00000044086.8, intron 1 of 2) 1775 ENSMUSG00000044086.8 ENSMUSG00000044086 ENSMUST00000095655 Lmod3 protein_coding Interval_126514 chr5 89447004 89447922 + 0 NA intron (ENSMUSG00000035540.12, intron 1 of 12) protein_coding-intron (ENSMUSG00000035540.12, intron 1 of 12) -11835 ENSMUSG00000035540.12 ENSMUSG00000035540 ENSMUST00000200534 Gc protein_coding Interval_165950 chr9 54888055 54888721 + 0 NA intron (ENSMUSG00000032293.8, intron 8 of 21) protein_coding-intron (ENSMUSG00000032293.8, intron 8 of 21) -9085 ENSMUSG00000032293.8 ENSMUSG00000032293 ENSMUST00000213482 Ireb2 protein_coding Interval_90639 chr2 31613664 31614235 + 0 NA promoter-TSS (ENSMUSG00000026843.15) protein_coding-promoter-TSS (ENSMUSG00000026843.15) 1528 ENSMUSG00000098904.1 ENSMUSG00000098904 ENSMUST00000183343 Mir6998 miRNA Interval_134600 chr6 29862399 29863288 + 0 NA intron (ENSMUSG00000029772.17, intron 2 of 17) protein_coding-intron (ENSMUSG00000029772.17, intron 1 of 16) -13836 ENSMUSG00000029772.17 ENSMUSG00000029772 ENSMUST00000128837 Ahcyl2 protein_coding Interval_29166 chr11 80917804 80918086 + 0 NA intron (ENSMUSG00000020704.13, intron 3 of 9) protein_coding-intron (ENSMUSG00000020704.13, intron 3 of 9) 59580 ENSMUSG00000053184.15 ENSMUSG00000053184 ENSMUST00000103222 Spaca3 protein_coding Interval_164698 chr9 40652304 40653403 + 0 NA Intergenic Intergenic 16254 ENSMUSG00000110992.1 ENSMUSG00000110992 ENSMUST00000216204 Gm35371 lincRNA Interval_86556 chr19 41678881 41679209 + 0 NA intron (ENSMUSG00000025020.11, intron 3 of 11) protein_coding-intron (ENSMUSG00000025020.11, intron 4 of 36) 64441 ENSMUSG00000025020.11 ENSMUSG00000025020 ENSMUST00000171586 Slit1 protein_coding Interval_53121 chr14 54575226 54578377 + 0 NA exon (ENSMUSG00000022178.11, exon 1 of 8) protein_coding-exon (ENSMUSG00000022178.11, exon 1 of 8) -4376 ENSMUSG00000064742.1 ENSMUSG00000064742 ENSMUST00000082808 Gm24705 snRNA Interval_157931 chr8 76506918 76507471 + 0 NA Intergenic Intergenic -92154 ENSMUSG00000110485.1 ENSMUSG00000110485 ENSMUST00000212103 Gm45740 lincRNA Interval_18808 chr10 91033702 91034445 + 0 NA intron (ENSMUSG00000019979.12, intron 16 of 26) protein_coding-intron (ENSMUSG00000019979.12, intron 16 of 26) 28332 ENSMUSG00000087966.1 ENSMUSG00000087966 ENSMUST00000157341 Gm25390 snRNA Interval_71162 chr17 20570805 20571257 + 0 NA exon (ENSMUSG00000071273.4, exon 1 of 1) processed_pseudogene-exon (ENSMUSG00000071273.4, exon 1 of 1) 662 ENSMUSG00000071273.4 ENSMUSG00000071273 ENSMUST00000095633 Gm5145 processed_pseudogene Interval_67374 chr16 48199315 48199725 + 0 NA Intergenic Intergenic -19085 ENSMUSG00000048164.9 ENSMUSG00000048164 ENSMUST00000062591 Gm7204 processed_pseudogene Interval_91436 chr2 38863792 38864443 + 0 NA exon (ENSMUSG00000107468.1, exon 1 of 1) TEC-exon (ENSMUSG00000107468.1, exon 1 of 1) 1954 ENSMUSG00000107468.1 ENSMUSG00000107468 ENSMUST00000204297 5730507A11Rik TEC Interval_4145 chr1 70635833 70636042 + 0 NA intron (ENSMUSG00000053153.14, intron 7 of 7) protein_coding-intron (ENSMUSG00000053153.14, intron 16 of 16) 39122 ENSMUSG00000075952.1 ENSMUSG00000075952 ENSMUST00000102000 Gm23422 snRNA Interval_8351 chr1 137695440 137696190 + 0 NA Intergenic Intergenic -38503 ENSMUSG00000088715.1 ENSMUSG00000088715 ENSMUST00000158090 Gm22727 snoRNA Interval_51280 chr14 25718452 25720191 + 0 NA intron (ENSMUSG00000055538.7, intron 1 of 1) protein_coding-intron (ENSMUSG00000055538.7, intron 3 of 3) 471 ENSMUSG00000055538.7 ENSMUSG00000055538 ENSMUST00000184642 Zcchc24 protein_coding Interval_55424 chr14 87093634 87093915 + 0 NA intron (ENSMUSG00000022021.14, intron 1 of 15) protein_coding-intron (ENSMUSG00000022021.14, intron 2 of 27) 47461 ENSMUSG00000022021.14 ENSMUSG00000022021 ENSMUST00000226134 Diaph3 protein_coding Interval_167480 chr9 69768067 69770740 + 0 NA intron (ENSMUSG00000097623.7, intron 1 of 4) antisense-intron (ENSMUSG00000097623.7, intron 1 of 5) 8257 ENSMUSG00000097623.7 ENSMUSG00000097623 ENSMUST00000180914 B230323A14Rik antisense Interval_10431 chr1 170819049 170820682 + 0 NA intron (ENSMUSG00000026663.6, intron 7 of 15) protein_coding-intron (ENSMUSG00000026663.6, intron 7 of 15) 13006 ENSMUSG00000096547.1 ENSMUSG00000096547 ENSMUST00000179933 Gm25235 snRNA Interval_53627 chr14 60264870 60265811 + 0 NA promoter-TSS (ENSMUSG00000021987.9) protein_coding-promoter-TSS (ENSMUSG00000021987.9) 67 ENSMUSG00000021987.9 ENSMUSG00000021987 ENSMUST00000224164 Mtmr6 protein_coding Interval_12513 chr1 194685353 194685630 + 0 NA intron (ENSMUSG00000026640.12, intron 3 of 31) protein_coding-intron (ENSMUSG00000026640.12, intron 3 of 31) 8489 ENSMUSG00000102841.1 ENSMUSG00000102841 ENSMUST00000194586 Gm38036 TEC Interval_140984 chr6 123818094 123819075 + 0 NA exon (ENSMUSG00000072780.3, exon 6 of 6) protein_coding-exon (ENSMUSG00000072780.3, exon 6 of 6) -10363 ENSMUSG00000088472.1 ENSMUSG00000088472 ENSMUST00000157847 Gm23079 snoRNA Interval_114405 chr4 75300612 75301353 + 0 NA Intergenic Intergenic -20227 ENSMUSG00000065884.1 ENSMUSG00000065884 ENSMUST00000083950 Gm22864 snoRNA Interval_31391 chr11 100389643 100390600 + 0 NA intron (ENSMUSG00000001552.14, intron 1 of 2) protein_coding-intron (ENSMUSG00000001552.14, intron 1 of 13) 7642 ENSMUSG00000001552.14 ENSMUSG00000001552 ENSMUST00000123903 Jup protein_coding Interval_115663 chr4 101825033 101825494 + 0 NA Intergenic Intergenic 18760 ENSMUSG00000035201.15 ENSMUSG00000035201 ENSMUST00000084386 B020004J07Rik protein_coding Interval_47555 chr13 88399304 88399529 + 0 NA Intergenic Intergenic 17070 ENSMUSG00000114565.1 ENSMUSG00000114565 ENSMUST00000225629 Gm47651 processed_pseudogene Interval_164750 chr9 41072938 41073409 + 0 NA intron (ENSMUSG00000032020.15, intron 1 of 3) protein_coding-intron (ENSMUSG00000032020.15, intron 1 of 13) 6333 ENSMUSG00000032020.15 ENSMUSG00000032020 ENSMUST00000132996 Ubash3b protein_coding Interval_39838 chr12 98929244 98929708 + 0 NA intron (ENSMUSG00000021013.16, intron 1 of 8) protein_coding-intron (ENSMUSG00000021013.16, intron 1 of 14) -14027 ENSMUSG00000021013.16 ENSMUSG00000021013 ENSMUST00000139298 Ttc8 protein_coding Interval_76600 chr17 82293453 82293681 + 0 NA Intergenic Intergenic 57690 ENSMUSG00000094390.1 ENSMUSG00000094390 ENSMUST00000174994 Gm23400 miRNA Interval_131959 chr5 141098696 141099304 + 0 NA Intergenic Intergenic 18569 ENSMUSG00000093344.1 ENSMUSG00000093344 ENSMUST00000175603 Gm26113 miRNA Interval_73812 chr17 44025644 44026374 + 0 NA promoter-TSS (ENSMUSG00000039601.16) protein_coding-promoter-TSS (ENSMUSG00000039601.16) -701 ENSMUSG00000039601.16 ENSMUSG00000039601 ENSMUST00000229939 Rcan2 protein_coding Interval_71711 chr17 25618138 25619050 + 0 NA intron (ENSMUSG00000002279.19, intron 4 of 6) protein_coding-intron (ENSMUSG00000002279.19, intron 4 of 10) 39274 ENSMUSG00000002279.19 ENSMUSG00000002279 ENSMUST00000156868 Lmf1 protein_coding Interval_28396 chr11 75630464 75631676 + 0 NA promoter-TSS (ENSMUSG00000006127.9) protein_coding-promoter-TSS (ENSMUSG00000006127.9) 15 ENSMUSG00000006127.9 ENSMUSG00000006127 ENSMUST00000139856 Inpp5k protein_coding Interval_70262 chr17 7799424 7800271 + 0 NA intron (ENSMUSG00000071984.11, intron 1 of 3) protein_coding-intron (ENSMUSG00000071984.11, intron 1 of 19) 27455 ENSMUSG00000071984.11 ENSMUSG00000071984 ENSMUST00000167580 Fndc1 protein_coding Interval_80868 chr18 49725280 49725772 + 0 NA intron (ENSMUSG00000024505.16, intron 2 of 4) protein_coding-intron (ENSMUSG00000024505.16, intron 2 of 3) 30041 ENSMUSG00000024505.16 ENSMUSG00000024505 ENSMUST00000237137 Dtwd2 protein_coding Interval_120732 chr4 150327447 150328115 + 0 NA intron (ENSMUSG00000039852.17, intron 1 of 22) protein_coding-intron (ENSMUSG00000039852.17, intron 1 of 22) 6588 ENSMUSG00000089292.1 ENSMUSG00000089292 ENSMUST00000158667 Gm23209 snRNA Interval_74203 chr17 47440100 47440898 + 0 NA intron (ENSMUSG00000034382.14, intron 1 of 4) protein_coding-intron (ENSMUSG00000034382.14, intron 1 of 4) -3123 ENSMUSG00000047150.8 ENSMUSG00000047150 ENSMUST00000160678 1700001C19Rik protein_coding Interval_49745 chr13 114443242 114444474 + 0 NA Intergenic Intergenic -5644 ENSMUSG00000114520.1 ENSMUSG00000114520 ENSMUST00000224609 Gm41073 processed_pseudogene Interval_85832 chr19 32230278 32231580 + 0 NA intron (ENSMUSG00000040451.18, intron 2 of 10) protein_coding-intron (ENSMUSG00000040451.18, intron 4 of 9) -21656 ENSMUSG00000118064.1 ENSMUSG00000118064 ENSMUST00000235377 Gm50210 sense_intronic Interval_149260 chr7 96768852 96770231 + 0 NA intron (ENSMUSG00000048078.16, intron 11 of 32) protein_coding-intron (ENSMUSG00000048078.16, intron 13 of 32) -27100 ENSMUSG00000048078.16 ENSMUSG00000048078 ENSMUST00000147659 Tenm4 protein_coding Interval_36949 chr12 55538814 55540051 + 0 NA Intergenic Intergenic -25807 ENSMUSG00000063129.1 ENSMUSG00000063129 ENSMUST00000080123 Aldoart2 protein_coding Interval_28757 chr11 78133107 78133811 + 0 NA intron (ENSMUSG00000037750.16, intron 1 of 2) protein_coding-intron (ENSMUSG00000037750.16, intron 1 of 2) 15979 ENSMUSG00000060727.4 ENSMUSG00000060727 ENSMUST00000118132 Gm12571 processed_pseudogene Interval_127615 chr5 105799915 105800930 + 0 NA intron (ENSMUSG00000046079.16, intron 1 of 2) protein_coding-intron (ENSMUSG00000046079.16, intron 2 of 2) -2709 ENSMUSG00000067058.7 ENSMUSG00000067058 ENSMUST00000132586 Rps15a-ps5 processed_pseudogene Interval_68659 chr16 83898266 83898601 + 0 NA Intergenic Intergenic 158951 ENSMUSG00000116745.1 ENSMUSG00000116745 ENSMUST00000231610 Gm41481 lincRNA Interval_13596 chr10 20105691 20106465 + 0 NA TTS (ENSMUSG00000071369.11) protein_coding-TTS (ENSMUSG00000071369.11) -18723 ENSMUSG00000071369.11 ENSMUSG00000071369 ENSMUST00000156369 Map3k5 protein_coding Interval_30486 chr11 94669642 94670923 + 0 NA intron (ENSMUSG00000020868.15, intron 1 of 4) protein_coding-intron (ENSMUSG00000020868.15, intron 2 of 10) 7131 ENSMUSG00000020868.15 ENSMUSG00000020868 ENSMUST00000174178 Xylt2 protein_coding Interval_30769 chr11 96363626 96364129 + 0 NA Intergenic Intergenic -2381 ENSMUSG00000018973.2 ENSMUSG00000018973 ENSMUST00000123805 Hoxb1 protein_coding Interval_41955 chr13 5444697 5445527 + 0 NA Intergenic Intergenic -9797 ENSMUSG00000114098.1 ENSMUSG00000114098 ENSMUST00000223343 Gm40660 lincRNA Interval_126686 chr5 92049923 92050146 + 0 NA Intergenic Intergenic -6151 ENSMUSG00000029403.14 ENSMUSG00000029403 ENSMUST00000201895 Cdkl2 protein_coding Interval_3581 chr1 59728120 59729824 + 0 NA Intergenic Intergenic 24182 ENSMUSG00000089093.3 ENSMUSG00000089093 ENSMUST00000158468 Snord11 snoRNA Interval_51896 chr14 33446526 33447608 + 0 NA promoter-TSS (ENSMUSG00000021936.14) protein_coding-promoter-TSS (ENSMUSG00000021936.14) 14934 ENSMUSG00000115745.1 ENSMUSG00000115745 ENSMUST00000228189 Gm46448 processed_pseudogene Interval_160884 chr8 114564177 114564525 + 0 NA intron (ENSMUSG00000004637.15, intron 5 of 8) protein_coding-intron (ENSMUSG00000004637.15, intron 5 of 8) 30549 ENSMUSG00000090217.1 ENSMUSG00000090217 ENSMUST00000159472 Gm16116 antisense Interval_35294 chr12 19968046 19968232 + 0 NA TTS (ENSMUSG00000112956.1) processed_pseudogene-TTS (ENSMUSG00000112956.1) 495 ENSMUSG00000112956.1 ENSMUSG00000112956 ENSMUST00000221058 Gm48645 processed_pseudogene Interval_76316 chr17 78992114 78992345 + 0 NA intron (ENSMUSG00000024070.15, intron 2 of 18) protein_coding-intron (ENSMUSG00000024070.15, intron 1 of 17) 28587 ENSMUSG00000024070.15 ENSMUSG00000024070 ENSMUST00000130070 Prkd3 protein_coding Interval_158649 chr8 84952600 84953302 + 0 NA exon (ENSMUSG00000048617.16, exon 4 of 6) protein_coding-exon (ENSMUSG00000048617.16, exon 4 of 6) 1770 ENSMUSG00000048617.16 ENSMUSG00000048617 ENSMUST00000152378 Rtbdn protein_coding Interval_20249 chr10 116429581 116429956 + 0 NA intron (ENSMUSG00000054934.10, intron 2 of 2) protein_coding-intron (ENSMUSG00000054934.10, intron 2 of 2) 11716 ENSMUSG00000020164.7 ENSMUSG00000020164 ENSMUST00000134586 Kcnmb4os1 antisense Interval_52535 chr14 47359721 47359948 + 0 NA Intergenic Intergenic -14082 ENSMUSG00000050335.17 ENSMUSG00000050335 ENSMUST00000146468 Lgals3 protein_coding Interval_161150 chr8 117801515 117802645 + 0 NA promoter-TSS (ENSMUSG00000031843.2) protein_coding-promoter-TSS (ENSMUSG00000031843.2) 18 ENSMUSG00000074065.4 ENSMUSG00000074065 ENSMUST00000098368 Gm10617 pseudogene Interval_77146 chr17 86905376 86906895 + 0 NA Intergenic Intergenic -12274 ENSMUSG00000037689.6 ENSMUSG00000037689 ENSMUST00000202221 Tmem247 protein_coding Interval_33749 chr11 118257487 118257733 + 0 NA Intergenic Intergenic 32462 ENSMUSG00000033909.17 ENSMUSG00000033909 ENSMUST00000151433 Usp36 protein_coding Interval_165751 chr9 52160682 52160874 + 0 NA intron (ENSMUSG00000035164.8, intron 1 of 5) protein_coding-intron (ENSMUSG00000035164.8, intron 1 of 5) 7794 ENSMUSG00000035164.8 ENSMUSG00000035164 ENSMUST00000165519 Zc3h12c protein_coding Interval_76212 chr17 77332747 77332954 + 0 NA Intergenic Intergenic 30360 ENSMUSG00000117578.1 ENSMUSG00000117578 ENSMUST00000234215 Rpsa-ps8 processed_pseudogene Interval_117963 chr4 127357579 127359887 + 0 NA promoter-TSS (ENSMUSG00000042357.2) protein_coding-promoter-TSS (ENSMUSG00000042357.2) -552 ENSMUSG00000042357.2 ENSMUSG00000042357 ENSMUST00000046498 Gjb5 protein_coding Interval_138963 chr6 93855868 93857064 + 0 NA intron (ENSMUSG00000045095.16, intron 2 of 24) protein_coding-intron (ENSMUSG00000045095.16, intron 2 of 21) -34149 ENSMUSG00000089069.1 ENSMUSG00000089069 ENSMUST00000158444 Gm22840 snoRNA Interval_72846 chr17 32550507 32552036 + 0 NA TTS (ENSMUSG00000048440.16) protein_coding-TTS (ENSMUSG00000048440.16) 14685 ENSMUSG00000048440.16 ENSMUSG00000048440 ENSMUST00000168285 Cyp4f16 protein_coding Interval_132507 chr5 145625781 145626329 + 0 NA intron (ENSMUSG00000106040.1, intron 4 of 4) unprocessed_pseudogene-intron (ENSMUSG00000106040.1, intron 4 of 4) -2688 ENSMUSG00000105474.1 ENSMUSG00000105474 ENSMUST00000197069 Selenok-ps7 processed_pseudogene Interval_35786 chr12 29628106 29628616 + 0 NA intron (ENSMUSG00000061911.15, intron 2 of 4) protein_coding-intron (ENSMUSG00000061911.15, intron 2 of 24) 58084 ENSMUSG00000112663.1 ENSMUSG00000112663 ENSMUST00000218114 C630031E19Rik antisense Interval_108221 chr3 122571672 122571888 + 0 NA intron (ENSMUSG00000039735.16, intron 2 of 14) protein_coding-intron (ENSMUSG00000039735.16, intron 2 of 13) 5292 ENSMUSG00000106364.1 ENSMUSG00000106364 ENSMUST00000195964 Gm42994 TEC Interval_167368 chr9 67854100 67854914 + 0 NA intron (ENSMUSG00000035284.10, intron 3 of 26) protein_coding-intron (ENSMUSG00000035284.10, intron 3 of 84) 14095 ENSMUSG00000035284.10 ENSMUSG00000035284 ENSMUST00000215524 Vps13c protein_coding Interval_29958 chr11 88380970 88381379 + 0 NA intron (ENSMUSG00000069769.13, intron 5 of 5) protein_coding-intron (ENSMUSG00000069769.13, intron 10 of 13) 24883 ENSMUSG00000085246.1 ENSMUSG00000085246 ENSMUST00000143208 Gm15893 antisense Interval_101325 chr2 180455827 180456862 + 0 NA promoter-TSS (ENSMUSG00000038963.15) protein_coding-promoter-TSS (ENSMUSG00000038963.15) 10 ENSMUSG00000038963.15 ENSMUSG00000038963 ENSMUST00000128367 Slco4a1 protein_coding Interval_31336 chr11 100097876 100098071 + 0 NA Intergenic Intergenic -1732 ENSMUSG00000048013.9 ENSMUSG00000048013 ENSMUST00000173988 Krt35 protein_coding Interval_157615 chr8 71725049 71725953 + 0 NA intron (ENSMUSG00000070000.13, intron 1 of 8) protein_coding-intron (ENSMUSG00000070000.13, intron 1 of 25) 203 ENSMUSG00000070000.13 ENSMUSG00000070000 ENSMUST00000125092 Fcho1 protein_coding Interval_13250 chr10 13576447 13577292 + 0 NA Intergenic Intergenic -23727 ENSMUSG00000019809.16 ENSMUSG00000019809 ENSMUST00000145337 Pex3 protein_coding Interval_44018 chr13 39647197 39647784 + 0 NA promoter-TSS (ENSMUSG00000114300.1) lincRNA-promoter-TSS (ENSMUSG00000114300.1) -243 ENSMUSG00000114300.1 ENSMUSG00000114300 ENSMUST00000224216 Gm32243 lincRNA Interval_70573 chr17 12087349 12087758 + 0 NA Intergenic Intergenic -31776 ENSMUSG00000023827.8 ENSMUSG00000023827 ENSMUST00000167905 Agpat4 protein_coding Interval_54247 chr14 66855020 66855446 + 0 NA intron (ENSMUSG00000022048.8, intron 3 of 13) protein_coding-intron (ENSMUSG00000022048.8, intron 3 of 13) 13455 ENSMUSG00000022048.8 ENSMUSG00000022048 ENSMUST00000022629 Dpysl2 protein_coding Interval_152354 chr7 132242443 132243372 + 0 NA intron (ENSMUSG00000030930.14, intron 6 of 7) protein_coding-intron (ENSMUSG00000030930.14, intron 6 of 7) 71171 ENSMUSG00000109555.1 ENSMUSG00000109555 ENSMUST00000208817 Gm44891 TEC Interval_173904 chrX 108850847 108851071 + 0 NA intron (ENSMUSG00000086629.8, intron 2 of 3) processed_transcript-intron (ENSMUSG00000086629.8, intron 2 of 5) -16611 ENSMUSG00000063663.11 ENSMUSG00000063663 ENSMUST00000101283 Brwd3 protein_coding Interval_101194 chr2 179307348 179309062 + 0 NA Intergenic Intergenic -56088 ENSMUSG00000081882.1 ENSMUSG00000081882 ENSMUST00000119749 Gm14294 processed_pseudogene Interval_75135 chr17 63833409 63833598 + 0 NA Intergenic Intergenic -29559 ENSMUSG00000000127.15 ENSMUSG00000000127 ENSMUST00000038080 Fer protein_coding Interval_173334 chrX 80639283 80640176 + 0 NA Intergenic Intergenic -26584 ENSMUSG00000084300.1 ENSMUSG00000084300 ENSMUST00000117416 Gm6954 processed_pseudogene Interval_162262 chr8 126516506 126517448 + 0 NA Intergenic Intergenic -40565 ENSMUSG00000074026.3 ENSMUSG00000074026 ENSMUST00000098307 Gm6091 processed_pseudogene Interval_95002 chr2 102900952 102901790 + 0 NA promoter-TSS (ENSMUSG00000005087.17) protein_coding-promoter-TSS (ENSMUSG00000005087.17) 87 ENSMUSG00000005087.17 ENSMUSG00000005087 ENSMUST00000124624 Cd44 protein_coding Interval_111885 chr4 32249978 32251341 + 0 NA intron (ENSMUSG00000040270.16, intron 1 of 1) protein_coding-intron (ENSMUSG00000040270.16, intron 1 of 7) -1102 ENSMUSG00000087049.1 ENSMUSG00000087049 ENSMUST00000133451 Bach2it1 sense_intronic Interval_97610 chr2 140500909 140501265 + 0 NA intron (ENSMUSG00000068205.14, intron 3 of 3) protein_coding-intron (ENSMUSG00000068205.14, intron 3 of 17) -60440 ENSMUSG00000065769.1 ENSMUSG00000065769 ENSMUST00000083835 Gm23846 snRNA Interval_108782 chr3 131247647 131248942 + 0 NA exon (ENSMUSG00000027984.8, exon 3 of 3) protein_coding-exon (ENSMUSG00000027984.8, exon 3 of 3) 23730 ENSMUSG00000027984.8 ENSMUSG00000027984 ENSMUST00000152427 Hadh protein_coding Interval_97554 chr2 139778386 139779013 + 0 NA Intergenic Intergenic -84598 ENSMUSG00000084207.1 ENSMUSG00000084207 ENSMUST00000120773 Gm14070 processed_pseudogene Interval_138827 chr6 92246060 92248140 + 0 NA Intergenic Intergenic -2450 ENSMUSG00000005892.4 ENSMUSG00000005892 ENSMUST00000006046 Trh protein_coding Interval_149127 chr7 94359238 94359955 + 0 NA intron (ENSMUSG00000108532.1, intron 2 of 2) lincRNA-intron (ENSMUSG00000108532.1, intron 2 of 2) 12976 ENSMUSG00000108315.1 ENSMUSG00000108315 ENSMUST00000206678 Gm44601 lincRNA Interval_75516 chr17 67710367 67711997 + 0 NA intron (ENSMUSG00000032796.8, intron 1 of 15) protein_coding-intron (ENSMUSG00000032796.8, intron 1 of 62) 13917 ENSMUSG00000032796.8 ENSMUSG00000032796 ENSMUST00000233224 Lama1 protein_coding Interval_160195 chr8 107069305 107069874 + 0 NA TTS (ENSMUSG00000031921.17) protein_coding-TTS (ENSMUSG00000031921.17) -3945 ENSMUSG00000031919.6 ENSMUSG00000031919 ENSMUST00000034393 Tmed6 protein_coding Interval_11012 chr1 178360005 178361446 + 0 NA Intergenic Intergenic 2796 ENSMUSG00000099303.1 ENSMUSG00000099303 ENSMUST00000185108 Gm27458 miRNA Interval_25346 chr11 46560865 46561611 + 0 NA promoter-TSS (ENSMUSG00000082749.1) processed_pseudogene-promoter-TSS (ENSMUSG00000082749.1) -793 ENSMUSG00000082749.1 ENSMUSG00000082749 ENSMUST00000120821 Rpl9-ps2 processed_pseudogene Interval_129419 chr5 119978174 119978651 + 0 NA Intergenic Intergenic 19169 ENSMUSG00000107063.1 ENSMUSG00000107063 ENSMUST00000201639 Gm38554 lincRNA Interval_27448 chr11 67873354 67873770 + 0 NA intron (ENSMUSG00000020905.11, intron 2 of 2) protein_coding-intron (ENSMUSG00000020905.11, intron 14 of 14) 47647 ENSMUSG00000020905.11 ENSMUSG00000020905 ENSMUST00000152120 Usp43 protein_coding Interval_121597 chr5 3766280 3767219 + 0 NA intron (ENSMUSG00000040351.11, intron 3 of 18) protein_coding-intron (ENSMUSG00000040351.11, intron 3 of 19) -11172 ENSMUSG00000105950.1 ENSMUSG00000105950 ENSMUST00000197051 Gm43679 TEC Interval_1660 chr1 30860012 30860209 + 0 NA intron (ENSMUSG00000048874.15, intron 2 of 6) protein_coding-intron (ENSMUSG00000048874.15, intron 1 of 14) 8428 ENSMUSG00000104315.1 ENSMUSG00000104315 ENSMUST00000192050 Gm37906 TEC Interval_170725 chr9 110350477 110350755 + 0 NA intron (ENSMUSG00000032485.14, intron 1 of 1) protein_coding-intron (ENSMUSG00000032485.14, intron 1 of 22) -11001 ENSMUSG00000032485.14 ENSMUSG00000032485 ENSMUST00000196424 Scap protein_coding Interval_57843 chr15 22974063 22974605 + 0 NA intron (ENSMUSG00000040420.15, intron 1 of 6) protein_coding-intron (ENSMUSG00000040420.15, intron 1 of 6) 38847 ENSMUSG00000091194.1 ENSMUSG00000091194 ENSMUST00000169624 Gm19840 processed_pseudogene Interval_142544 chr6 143174059 143175714 + 0 NA intron (ENSMUSG00000030275.6, intron 1 of 6) protein_coding-intron (ENSMUSG00000030275.6, intron 1 of 7) 7632 ENSMUSG00000030275.6 ENSMUSG00000030275 ENSMUST00000205256 Etnk1 protein_coding Interval_122002 chr5 13618906 13619129 + 0 NA Intergenic Intergenic -1202 ENSMUSG00000104905.1 ENSMUSG00000104905 ENSMUST00000197524 Gm43718 TEC Interval_66749 chr16 36989654 36990767 + 0 NA exon (ENSMUSG00000047746.14, exon 1 of 4) protein_coding-exon (ENSMUSG00000047746.14, exon 1 of 4) -6417 ENSMUSG00000116773.1 ENSMUSG00000116773 ENSMUST00000232121 Gm49605 processed_pseudogene Interval_165227 chr9 45517770 45518712 + 0 NA intron (ENSMUSG00000032087.11, intron 3 of 32) protein_coding-intron (ENSMUSG00000032087.11, intron 3 of 32) -86511 ENSMUSG00000097074.2 ENSMUSG00000097074 ENSMUST00000215652 4833428L15Rik antisense Interval_20622 chr10 119646091 119647191 + 0 NA intron (ENSMUSG00000034813.18, intron 1 of 21) protein_coding-intron (ENSMUSG00000034813.18, intron 1 of 22) -7423 ENSMUSG00000112106.1 ENSMUSG00000112106 ENSMUST00000218068 Gm47026 TEC Interval_43543 chr13 32954633 32954944 + 0 NA Intergenic Intergenic -16097 ENSMUSG00000074973.4 ENSMUSG00000074973 ENSMUST00000140484 Gm11382 unprocessed_pseudogene Interval_80589 chr18 44459582 44459980 + 0 NA intron (ENSMUSG00000071856.10, intron 12 of 16) protein_coding-intron (ENSMUSG00000071856.10, intron 14 of 18) 79279 ENSMUSG00000024472.9 ENSMUSG00000024472 ENSMUST00000025350 Dcp2 protein_coding Interval_49276 chr13 110046205 110046392 + 0 NA Intergenic Intergenic 142489 ENSMUSG00000084651.1 ENSMUSG00000084651 ENSMUST00000122702 Mir1904 miRNA Interval_109817 chr3 148097203 148097444 + 0 NA Intergenic Intergenic -32921 ENSMUSG00000106285.1 ENSMUSG00000106285 ENSMUST00000196226 Gm43574 processed_transcript Interval_107464 chr3 107881552 107881777 + 0 NA TTS (ENSMUSG00000040600.9) protein_coding-TTS (ENSMUSG00000040600.9) -4302 ENSMUSG00000105456.1 ENSMUSG00000105456 ENSMUST00000198085 Gm43745 TEC Interval_22554 chr11 11745251 11745556 + 0 NA intron (ENSMUSG00000018654.17, intron 4 of 8) protein_coding-intron (ENSMUSG00000018654.17, intron 3 of 6) -48964 ENSMUSG00000073145.6 ENSMUSG00000073145 ENSMUST00000132007 Gm12000 antisense Interval_168901 chr9 88474743 88474972 + 0 NA intron (ENSMUSG00000032423.12, intron 3 of 3) protein_coding-intron (ENSMUSG00000032423.12, intron 6 of 11) 6367 ENSMUSG00000032423.12 ENSMUSG00000032423 ENSMUST00000172508 Syncrip protein_coding Interval_75552 chr17 67971242 67971448 + 0 NA intron (ENSMUSG00000024043.13, intron 1 of 17) protein_coding-intron (ENSMUSG00000024043.13, intron 1 of 17) -98297 ENSMUSG00000024043.13 ENSMUSG00000024043 ENSMUST00000170581 Arhgap28 protein_coding Interval_93549 chr2 74041784 74042544 + 0 NA Intergenic Intergenic 60178 ENSMUSG00000085387.1 ENSMUSG00000085387 ENSMUST00000151443 A630050E04Rik lincRNA Interval_145456 chr7 34869595 34870067 + 0 NA Intergenic Intergenic 74154 ENSMUSG00000077469.1 ENSMUSG00000077469 ENSMUST00000104281 Gm25922 snoRNA Interval_59641 chr15 57184617 57185024 + 0 NA Intergenic Intergenic 54293 ENSMUSG00000094730.1 ENSMUSG00000094730 ENSMUST00000177706 Gm26178 snRNA Interval_32062 chr11 104965837 104966441 + 0 NA intron (ENSMUSG00000040838.10, intron 121 of 187) protein_coding-intron (ENSMUSG00000040838.10, intron 121 of 187) 37923 ENSMUSG00000080694.1 ENSMUSG00000080694 ENSMUST00000118253 Gm11621 processed_pseudogene Interval_76332 chr17 79140272 79140670 + 0 NA Intergenic Intergenic -36727 ENSMUSG00000117054.1 ENSMUSG00000117054 ENSMUST00000232888 Gm49869 processed_pseudogene Interval_147400 chr7 66474393 66475387 + 0 NA Intergenic Intergenic 33004 ENSMUSG00000109114.1 ENSMUSG00000109114 ENSMUST00000208297 Gm44753 lincRNA Interval_62641 chr15 95880234 95881185 + 0 NA promoter-TSS (ENSMUSG00000092978.1) miRNA-promoter-TSS (ENSMUSG00000092978.1) -892 ENSMUSG00000092978.1 ENSMUSG00000092978 ENSMUST00000175237 Gm25070 miRNA Interval_168111 chr9 76789491 76789860 + 0 NA Intergenic Intergenic -16151 ENSMUSG00000084502.1 ENSMUSG00000084502 ENSMUST00000122553 Gm23791 misc_RNA Interval_64499 chr16 12775631 12776572 + 0 NA intron (ENSMUSG00000116520.1, intron 2 of 11) lincRNA-intron (ENSMUSG00000116520.1, intron 2 of 11) -14735 ENSMUSG00000091416.2 ENSMUSG00000091416 ENSMUST00000171185 Gm6327 processed_pseudogene Interval_50121 chr14 8111585 8112290 + 0 NA intron (ENSMUSG00000033885.15, intron 1 of 2) protein_coding-intron (ENSMUSG00000033885.15, intron 1 of 17) 13714 ENSMUSG00000033885.15 ENSMUSG00000033885 ENSMUST00000224462 Pxk protein_coding Interval_94759 chr2 94048866 94049845 + 0 NA intron (ENSMUSG00000027195.10, intron 4 of 7) protein_coding-intron (ENSMUSG00000027195.10, intron 7 of 10) 17409 ENSMUSG00000027195.10 ENSMUSG00000027195 ENSMUST00000141955 Hsd17b12 protein_coding Interval_164533 chr9 37872290 37872510 + 0 NA Intergenic Intergenic 18131 ENSMUSG00000066749.3 ENSMUSG00000066749 ENSMUST00000086063 Olfr877 protein_coding Interval_52981 chr14 52583603 52584409 + 0 NA Intergenic Intergenic 3341 ENSMUSG00000076760.2 ENSMUSG00000076760 ENSMUST00000103569 Trav3-1 TR_V_gene Interval_48055 chr13 95607740 95608078 + 0 NA intron (ENSMUSG00000048376.6, intron 1 of 1) protein_coding-intron (ENSMUSG00000048376.6, intron 1 of 1) 10578 ENSMUSG00000048376.6 ENSMUSG00000048376 ENSMUST00000059193 F2r protein_coding Interval_109204 chr3 137875592 137876044 + 0 NA TTS (ENSMUSG00000106629.1) antisense-TTS (ENSMUSG00000106629.1) 2308 ENSMUSG00000106629.1 ENSMUSG00000106629 ENSMUST00000198291 Gm40155 antisense Interval_106025 chr3 90759409 90759672 + 0 NA TTS (ENSMUSG00000105892.1) processed_pseudogene-TTS (ENSMUSG00000105892.1) 808 ENSMUSG00000105892.1 ENSMUSG00000105892 ENSMUST00000197218 Gm35013 processed_pseudogene Interval_80309 chr18 39067298 39069029 + 0 NA intron (ENSMUSG00000036452.18, intron 1 of 22) protein_coding-intron (ENSMUSG00000036452.18, intron 1 of 22) -73971 ENSMUSG00000086991.1 ENSMUSG00000086991 ENSMUST00000131421 Gm15334 antisense Interval_106746 chr3 100358960 100359480 + 0 NA Intergenic Intergenic -54340 ENSMUSG00000081440.2 ENSMUSG00000081440 ENSMUST00000121385 Gm12464 processed_pseudogene Interval_117696 chr4 125598335 125600179 + 0 NA intron (ENSMUSG00000001985.9, intron 1 of 15) protein_coding-intron (ENSMUSG00000001985.9, intron 1 of 15) 94508 ENSMUSG00000094403.1 ENSMUSG00000094403 ENSMUST00000102081 Mir692-2 miRNA Interval_70857 chr17 15431790 15432304 + 0 NA exon (ENSMUSG00000014763.8, exon 11 of 11) protein_coding-exon (ENSMUSG00000014763.8, exon 11 of 11) 2918 ENSMUSG00000116718.1 ENSMUSG00000116718 ENSMUST00000231947 Gm49668 lincRNA Interval_152563 chr7 134587901 134588113 + 0 NA Intergenic Intergenic -72328 ENSMUSG00000108702.1 ENSMUSG00000108702 ENSMUST00000205452 Gm9333 processed_pseudogene Interval_141018 chr6 124414197 124416173 + 0 NA promoter-TSS (ENSMUSG00000005069.12) protein_coding-promoter-TSS (ENSMUSG00000005069.12) -15571 ENSMUSG00000005069.12 ENSMUSG00000005069 ENSMUST00000150812 Pex5 protein_coding Interval_74996 chr17 59281320 59281795 + 0 NA Intergenic Intergenic -55714 ENSMUSG00000077629.1 ENSMUSG00000077629 ENSMUST00000104441 Gm23769 snoRNA Interval_124498 chr5 49368526 49369966 + 0 NA intron (ENSMUSG00000029088.16, intron 1 of 8) protein_coding-intron (ENSMUSG00000029088.16, intron 1 of 8) 42586 ENSMUSG00000105700.1 ENSMUSG00000105700 ENSMUST00000199945 Gm42772 TEC Interval_143959 chr7 18555583 18555896 + 0 NA TTS (ENSMUSG00000070797.4) protein_coding-TTS (ENSMUSG00000070797.4) 6654 ENSMUSG00000065313.1 ENSMUSG00000065313 ENSMUST00000083379 Gm26062 snRNA Interval_73935 chr17 45563699 45565018 + 0 NA promoter-TSS (ENSMUSG00000037089.11) protein_coding-promoter-TSS (ENSMUSG00000037089.11) 334 ENSMUSG00000037089.11 ENSMUSG00000037089 ENSMUST00000224341 Slc35b2 protein_coding Interval_154332 chr8 14689459 14690000 + 0 NA intron (ENSMUSG00000047495.15, intron 3 of 14) protein_coding-intron (ENSMUSG00000047495.15, intron 3 of 14) 57698 ENSMUSG00000084945.1 ENSMUSG00000084945 ENSMUST00000155211 C030037F17Rik antisense Interval_170285 chr9 106685302 106687984 + 0 NA promoter-TSS (ENSMUSG00000040813.16) protein_coding-promoter-TSS (ENSMUSG00000040813.16) -1341 ENSMUSG00000040813.16 ENSMUSG00000040813 ENSMUST00000185645 Tex264 protein_coding Interval_159980 chr8 105554128 105556138 + 0 NA intron (ENSMUSG00000013160.7, intron 1 of 7) protein_coding-intron (ENSMUSG00000013160.7, intron 1 of 7) -11191 ENSMUSG00000104168.1 ENSMUSG00000104168 ENSMUST00000192691 Gm38250 antisense Interval_35532 chr12 24564860 24566428 + 0 NA Intergenic Intergenic -15075 ENSMUSG00000020656.16 ENSMUSG00000020656 ENSMUST00000020985 Grhl1 protein_coding Interval_146930 chr7 55968306 55969678 + 0 NA intron (ENSMUSG00000087178.7, intron 1 of 2) processed_transcript-intron (ENSMUSG00000087178.7, intron 1 of 5) 5850 ENSMUSG00000108358.1 ENSMUSG00000108358 ENSMUST00000205400 Gm44509 TEC Interval_123931 chr5 36683404 36683898 + 0 NA intron (ENSMUSG00000029190.19, intron 1 of 2) protein_coding-intron (ENSMUSG00000029190.19, intron 1 of 8) 11993 ENSMUSG00000089197.1 ENSMUSG00000089197 ENSMUST00000158572 Gm25767 snoRNA Interval_169063 chr9 91381387 91382157 + 0 NA promoter-TSS (ENSMUSG00000036972.14) protein_coding-promoter-TSS (ENSMUSG00000036972.14) -370 ENSMUSG00000102803.1 ENSMUSG00000102803 ENSMUST00000195215 Gm37477 TEC Interval_117358 chr4 123219678 123220500 + 0 NA Intergenic Intergenic -13764 ENSMUSG00000032744.4 ENSMUSG00000032744 ENSMUST00000127172 Heyl protein_coding Interval_93121 chr2 70379374 70380473 + 0 NA intron (ENSMUSG00000042064.13, intron 31 of 33) protein_coding-intron (ENSMUSG00000042064.13, intron 32 of 34) -79059 ENSMUSG00000047965.9 ENSMUSG00000047965 ENSMUST00000140507 Rpl9-ps7 processed_pseudogene Interval_169606 chr9 99414444 99415582 + 0 NA intron (ENSMUSG00000032470.17, intron 1 of 5) protein_coding-intron (ENSMUSG00000032470.17, intron 1 of 5) -20318 ENSMUSG00000032470.17 ENSMUSG00000032470 ENSMUST00000123771 Mras protein_coding Interval_152548 chr7 134238867 134239096 + 0 NA Intergenic Intergenic -6850 ENSMUSG00000054555.11 ENSMUSG00000054555 ENSMUST00000154144 Adam12 protein_coding Interval_110572 chr4 4048336 4049676 + 0 NA Intergenic Intergenic 28516 ENSMUSG00000071019.11 ENSMUSG00000071019 ENSMUST00000108383 Sdr16c6 protein_coding Interval_127553 chr5 105172947 105173144 + 0 NA Intergenic Intergenic -33501 ENSMUSG00000079363.7 ENSMUSG00000079363 ENSMUST00000198278 Gbp4 protein_coding Interval_27604 chr11 68996399 68996672 + 0 NA TTS (ENSMUSG00000084522.1) snRNA-TTS (ENSMUSG00000084522.1) 533 ENSMUSG00000084522.1 ENSMUSG00000084522 ENSMUST00000122573 Gm25819 snRNA Interval_28359 chr11 75361705 75362154 + 0 NA intron (ENSMUSG00000018809.2, intron 2 of 2) protein_coding-intron (ENSMUSG00000018809.2, intron 2 of 10) 13434 ENSMUSG00000018809.2 ENSMUSG00000018809 ENSMUST00000135774 Smyd4 protein_coding Interval_113498 chr4 55364181 55364858 + 0 NA intron (ENSMUSG00000028426.10, intron 1 of 1) protein_coding-intron (ENSMUSG00000028426.10, intron 1 of 9) 14429 ENSMUSG00000028426.10 ENSMUSG00000028426 ENSMUST00000156263 Rad23b protein_coding Interval_45270 chr13 53775761 53776388 + 0 NA promoter-TSS (ENSMUSG00000114143.1) lincRNA-promoter-TSS (ENSMUSG00000114143.1) -553 ENSMUSG00000114143.1 ENSMUSG00000114143 ENSMUST00000221931 Gm48548 lincRNA Interval_116614 chr4 116066023 116066389 + 0 NA TTS (ENSMUSG00000063882.12) protein_coding-TTS (ENSMUSG00000063882.12) -1062 ENSMUSG00000078238.4 ENSMUSG00000078238 ENSMUST00000128518 Gm12854 processed_pseudogene Interval_24059 chr11 29866876 29867252 + 0 NA intron (ENSMUSG00000044072.14, intron 7 of 41) protein_coding-intron (ENSMUSG00000044072.14, intron 7 of 41) 17603 ENSMUSG00000088135.1 ENSMUSG00000088135 ENSMUST00000157510 Gm22588 snoRNA Interval_166290 chr9 58097680 58098926 + 0 NA intron (ENSMUSG00000037716.15, intron 1 of 6) protein_coding-intron (ENSMUSG00000037716.15, intron 2 of 18) -19512 ENSMUSG00000085753.1 ENSMUSG00000085753 ENSMUST00000131007 Gm16131 antisense Interval_171830 chr9 121493578 121494796 + 0 NA promoter-TSS (ENSMUSG00000032532.7) protein_coding-promoter-TSS (ENSMUSG00000032532.7) 323 ENSMUSG00000032532.7 ENSMUSG00000032532 ENSMUST00000217581 Cck protein_coding Interval_141886 chr6 135144454 135144929 + 0 NA intron (ENSMUSG00000042770.8, intron 3 of 3) protein_coding-intron (ENSMUSG00000042770.8, intron 3 of 3) -3957 ENSMUSG00000088372.1 ENSMUSG00000088372 ENSMUST00000157747 Gm22881 snoRNA Interval_111568 chr4 23572934 23573711 + 0 NA Intergenic Intergenic 53423 ENSMUSG00000089323.1 ENSMUSG00000089323 ENSMUST00000158698 Gm25978 miRNA Interval_30924 chr11 97246298 97247436 + 0 NA intron (ENSMUSG00000001441.13, intron 4 of 5) protein_coding-intron (ENSMUSG00000001441.13, intron 4 of 22) -33261 ENSMUSG00000086680.2 ENSMUSG00000086680 ENSMUST00000133160 Gm11592 antisense Interval_62817 chr15 97188787 97189178 + 0 NA Intergenic Intergenic -21738 ENSMUSG00000116295.1 ENSMUSG00000116295 ENSMUST00000229491 Gm32885 lincRNA Interval_41365 chr12 113102521 113102944 + 0 NA intron (ENSMUSG00000021144.14, intron 1 of 20) protein_coding-intron (ENSMUSG00000021144.14, intron 1 of 20) 27954 ENSMUSG00000012211.13 ENSMUSG00000012211 ENSMUST00000155492 Tex22 protein_coding Interval_66226 chr16 32437591 32437830 + 0 NA intron (ENSMUSG00000005615.15, intron 1 of 8) protein_coding-intron (ENSMUSG00000005615.15, intron 1 of 8) 17915 ENSMUSG00000014075.15 ENSMUSG00000014075 ENSMUST00000131204 Tctex1d2 protein_coding Interval_79991 chr18 36519148 36519482 + 0 NA Intergenic Intergenic -2568 ENSMUSG00000118214.1 ENSMUSG00000118214 ENSMUST00000235275 Gm50199 lincRNA Interval_163402 chr9 21273182 21273966 + 0 NA TTS (ENSMUSG00000035047.9) protein_coding-TTS (ENSMUSG00000035047.9) 5496 ENSMUSG00000002820.6 ENSMUSG00000002820 ENSMUST00000217591 Atg4d protein_coding Interval_138804 chr6 92034738 92035039 + 0 NA intron (ENSMUSG00000034037.14, intron 2 of 19) protein_coding-intron (ENSMUSG00000034037.14, intron 3 of 20) -18771 ENSMUSG00000087317.1 ENSMUSG00000087317 ENSMUST00000144105 4930466I24Rik antisense Interval_17309 chr10 75763870 75765381 + 0 NA promoter-TSS (ENSMUSG00000020196.10) protein_coding-promoter-TSS (ENSMUSG00000020196.10) -2536 ENSMUSG00000112789.1 ENSMUSG00000112789 ENSMUST00000219818 Gm19326 processed_pseudogene Interval_10097 chr1 165771236 165772391 + 0 NA intron (ENSMUSG00000040713.12, intron 4 of 4) protein_coding-intron (ENSMUSG00000040713.12, intron 3 of 3) 5342 ENSMUSG00000104306.1 ENSMUSG00000104306 ENSMUST00000194000 Gm36972 lincRNA Interval_94439 chr2 91223225 91223806 + 0 NA intron (ENSMUSG00000002109.14, intron 3 of 8) protein_coding-intron (ENSMUSG00000002109.14, intron 3 of 9) 11816 ENSMUSG00000002109.14 ENSMUSG00000002109 ENSMUST00000028696 Ddb2 protein_coding Interval_115481 chr4 99298782 99299268 + 0 NA Intergenic Intergenic 3125 ENSMUSG00000070891.2 ENSMUSG00000070891 ENSMUST00000094955 Gm12689 protein_coding Interval_105689 chr3 88579338 88579865 + 0 NA promoter-TSS (ENSMUSG00000041355.13) protein_coding-promoter-TSS (ENSMUSG00000041355.13) -7 ENSMUSG00000041355.13 ENSMUSG00000041355 ENSMUST00000035785 Ssr2 protein_coding Interval_35685 chr12 27434087 27434716 + 0 NA Intergenic Intergenic -91827 ENSMUSG00000063632.6 ENSMUSG00000063632 ENSMUST00000079063 Sox11 protein_coding Interval_109294 chr3 138730628 138731614 + 0 NA Intergenic Intergenic -4137 ENSMUSG00000105838.1 ENSMUSG00000105838 ENSMUST00000197761 4930425O10Rik lincRNA Interval_97694 chr2 142870155 142870477 + 0 NA intron (ENSMUSG00000038844.10, intron 1 of 26) protein_coding-intron (ENSMUSG00000038844.10, intron 1 of 25) 31203 ENSMUSG00000038844.10 ENSMUSG00000038844 ENSMUST00000212106 Kif16b protein_coding Interval_3027 chr1 52308096 52308445 + 0 NA Intergenic Intergenic -19175 ENSMUSG00000099648.1 ENSMUSG00000099648 ENSMUST00000185256 Gm5975 processed_pseudogene Interval_122113 chr5 17223547 17223985 + 0 NA TTS (ENSMUSG00000091273.1) unprocessed_pseudogene-TTS (ENSMUSG00000091273.1) 4168 ENSMUSG00000091273.1 ENSMUSG00000091273 ENSMUST00000166114 Gm6673 unprocessed_pseudogene Interval_75663 chr17 70302037 70302909 + 0 NA intron (ENSMUSG00000003279.17, intron 3 of 8) protein_coding-intron (ENSMUSG00000003279.17, intron 3 of 14) -376642 ENSMUSG00000117078.1 ENSMUSG00000117078 ENSMUST00000232868 Gm4561 processed_pseudogene Interval_156097 chr8 44456355 44456630 + 0 NA Intergenic Intergenic 91582 ENSMUSG00000092685.1 ENSMUSG00000092685 ENSMUST00000174944 Gm26241 miRNA Interval_165938 chr9 54821028 54822352 + 0 NA Intergenic Intergenic 3592 ENSMUSG00000111686.1 ENSMUSG00000111686 ENSMUST00000213253 Rab7-ps1 processed_pseudogene Interval_1996 chr1 35783047 35783632 + 0 NA Intergenic Intergenic 21737 ENSMUSG00000064601.1 ENSMUSG00000064601 ENSMUST00000082667 Gm25634 snRNA Interval_12840 chr10 6133539 6134989 + 0 NA Intergenic Intergenic -211878 ENSMUSG00000019775.17 ENSMUSG00000019775 ENSMUST00000019909 Rgs17 protein_coding Interval_98642 chr2 153753651 153753897 + 0 NA intron (ENSMUSG00000027479.14, intron 2 of 3) protein_coding-intron (ENSMUSG00000027479.14, intron 2 of 6) 12172 ENSMUSG00000027479.14 ENSMUSG00000027479 ENSMUST00000123570 Mapre1 protein_coding Interval_81547 chr18 61620875 61622260 + 0 NA Intergenic Intergenic -18086 ENSMUSG00000098098.7 ENSMUSG00000098098 ENSMUST00000183087 Bvht lincRNA Interval_37270 chr12 64104198 64104414 + 0 NA Intergenic Intergenic -39442 ENSMUSG00000113208.1 ENSMUSG00000113208 ENSMUST00000222001 Gm48421 lincRNA Interval_85279 chr19 24317076 24318484 + 0 NA promoter-TSS (ENSMUSG00000024867.14) protein_coding-promoter-TSS (ENSMUSG00000024867.14) 28064 ENSMUSG00000082107.1 ENSMUSG00000082107 ENSMUST00000118970 Gm16216 processed_pseudogene Interval_75190 chr17 64521623 64522655 + 0 NA intron (ENSMUSG00000073377.9, intron 1 of 2) lincRNA-intron (ENSMUSG00000073377.9, intron 1 of 3) 33521 ENSMUSG00000073377.9 ENSMUSG00000073377 ENSMUST00000168379 AU016765 lincRNA Interval_110290 chr3 156052624 156053181 + 0 NA Intergenic Intergenic -7046 ENSMUSG00000104826.1 ENSMUSG00000104826 ENSMUST00000198230 Gm42947 lincRNA Interval_158383 chr8 83265586 83266293 + 0 NA intron (ENSMUSG00000031709.15, intron 3 of 6) protein_coding-intron (ENSMUSG00000031709.15, intron 14 of 17) -1147 ENSMUSG00000110422.1 ENSMUSG00000110422 ENSMUST00000211568 Gm17999 processed_pseudogene Interval_74861 chr17 56934952 56936193 + 0 NA promoter-TSS (ENSMUSG00000024212.9) protein_coding-promoter-TSS (ENSMUSG00000024212.9) -22748 ENSMUSG00000117245.1 ENSMUSG00000117245 ENSMUST00000232883 Gm49887 lincRNA Interval_67041 chr16 41975955 41976168 + 0 NA intron (ENSMUSG00000061080.11, intron 5 of 8) protein_coding-intron (ENSMUSG00000061080.11, intron 3 of 5) 208856 ENSMUSG00000116841.1 ENSMUSG00000116841 ENSMUST00000232237 Gm49737 processed_pseudogene Interval_73339 chr17 36284238 36284491 + 0 NA exon (ENSMUSG00000023083.7, exon 5 of 5) protein_coding-exon (ENSMUSG00000023083.7, exon 5 of 5) 2126 ENSMUSG00000023083.7 ENSMUSG00000023083 ENSMUST00000023845 H2-M10.2 protein_coding Interval_121238 chr4 154297596 154298253 + 0 NA intron (ENSMUSG00000029032.12, intron 1 of 4) protein_coding-intron (ENSMUSG00000029032.12, intron 1 of 14) 3739 ENSMUSG00000029032.12 ENSMUSG00000029032 ENSMUST00000152947 Arhgef16 protein_coding Interval_105127 chr3 82046650 82047548 + 0 NA intron (ENSMUSG00000028005.13, intron 4 of 13) protein_coding-intron (ENSMUSG00000028005.13, intron 4 of 13) 27590 ENSMUSG00000028005.13 ENSMUSG00000028005 ENSMUST00000193085 Gucy1b1 protein_coding Interval_47397 chr13 83306708 83307407 + 0 NA Intergenic Intergenic -117348 ENSMUSG00000114735.1 ENSMUSG00000114735 ENSMUST00000224835 Gm48156 processed_pseudogene Interval_79671 chr18 34430169 34430409 + 0 NA exon (ENSMUSG00000014503.15, exon 9 of 15) protein_coding-exon (ENSMUSG00000014503.15, exon 9 of 15) 21800 ENSMUSG00000014503.15 ENSMUSG00000014503 ENSMUST00000166156 Pkd2l2 protein_coding Interval_76326 chr17 79081004 79081282 + 0 NA intron (ENSMUSG00000024084.8, intron 4 of 5) protein_coding-intron (ENSMUSG00000024084.8, intron 5 of 6) 22601 ENSMUSG00000117054.1 ENSMUSG00000117054 ENSMUST00000232888 Gm49869 processed_pseudogene Interval_54850 chr14 75813791 75814449 + 0 NA Intergenic Intergenic -27115 ENSMUSG00000022003.7 ENSMUSG00000022003 ENSMUST00000228379 Slc25a30 protein_coding Interval_17205 chr10 74966549 74968274 + 0 NA intron (ENSMUSG00000040009.6, intron 1 of 1) protein_coding-intron (ENSMUSG00000009070.14, intron 4 of 6) 202 ENSMUSG00000040009.6 ENSMUSG00000040009 ENSMUST00000159991 Gnaz protein_coding Interval_2271 chr1 37579456 37579839 + 0 NA Intergenic Intergenic -34612 ENSMUSG00000089767.1 ENSMUSG00000089767 ENSMUST00000160659 4930556I23Rik antisense Interval_12096 chr1 189727361 189729648 + 0 NA exon (ENSMUSG00000026604.17, exon 1 of 19) protein_coding-exon (ENSMUSG00000026604.17, exon 1 of 19) 43176 ENSMUSG00000103374.1 ENSMUSG00000103374 ENSMUST00000193510 Gm37239 processed_pseudogene Interval_1484 chr1 24030088 24030386 + 0 NA exon (ENSMUSG00000026153.15, exon 14 of 21) protein_coding-exon (ENSMUSG00000026153.15, exon 14 of 21) -24607 ENSMUSG00000026154.4 ENSMUSG00000026154 ENSMUST00000155767 Sdhaf4 protein_coding Interval_84493 chr19 11856304 11857083 + 0 NA promoter-TSS (ENSMUSG00000060556.4) protein_coding-promoter-TSS (ENSMUSG00000060556.4) 4373 ENSMUSG00000060556.4 ENSMUSG00000060556 ENSMUST00000079875 Olfr1418 protein_coding Interval_12615 chr10 3920793 3921054 + 0 NA intron (ENSMUSG00000040624.18, intron 4 of 15) protein_coding-intron (ENSMUSG00000040624.18, intron 4 of 15) 13954 ENSMUSG00000089392.1 ENSMUSG00000089392 ENSMUST00000158767 Gm23023 rRNA Interval_118787 chr4 133697840 133698257 + 0 NA intron (ENSMUSG00000007880.16, intron 4 of 19) protein_coding-intron (ENSMUSG00000007880.16, intron 4 of 19) 19060 ENSMUSG00000104566.1 ENSMUSG00000104566 ENSMUST00000200408 Mir7227 miRNA Interval_36298 chr12 40893601 40894353 + 0 NA exon (ENSMUSG00000113337.1, exon 1 of 1) processed_pseudogene-exon (ENSMUSG00000113337.1, exon 1 of 1) 492 ENSMUSG00000113337.1 ENSMUSG00000113337 ENSMUST00000222682 Gm19220 processed_pseudogene Interval_65736 chr16 26424612 26424986 + 0 NA Intergenic Intergenic -38336 ENSMUSG00000038148.13 ENSMUSG00000038148 ENSMUST00000115302 Cldn16 protein_coding Interval_118904 chr4 134381618 134382577 + 0 NA intron (ENSMUSG00000028838.11, intron 1 of 5) protein_coding-intron (ENSMUSG00000028838.11, intron 1 of 5) -15226 ENSMUSG00000037366.14 ENSMUSG00000037366 ENSMUST00000145626 Pafah2 protein_coding Interval_53162 chr14 54817985 54818295 + 0 NA intron (ENSMUSG00000112858.2, intron 2 of 13) protein_coding-intron (ENSMUSG00000112858.2, intron 2 of 14) 3990 ENSMUSG00000112858.2 ENSMUSG00000112858 ENSMUST00000219496 Rnf212b protein_coding Interval_113500 chr4 55376085 55376755 + 0 NA intron (ENSMUSG00000028426.10, intron 4 of 5) protein_coding-intron (ENSMUSG00000028426.10, intron 4 of 9) 16281 ENSMUSG00000084144.1 ENSMUSG00000084144 ENSMUST00000120819 Gm12516 processed_pseudogene Interval_80125 chr18 37749066 37749513 + 0 NA exon (ENSMUSG00000097330.2, exon 2 of 2) processed_transcript-exon (ENSMUSG00000097330.2, exon 2 of 2) 2296 ENSMUSG00000102222.1 ENSMUSG00000102222 ENSMUST00000193404 Pcdhga10 protein_coding Interval_35688 chr12 27502814 27503733 + 0 NA Intergenic Intergenic -94928 ENSMUSG00000113421.1 ENSMUSG00000113421 ENSMUST00000220893 Gm4166 lincRNA Interval_37984 chr12 73591803 73592406 + 0 NA intron (ENSMUSG00000021108.18, intron 1 of 12) protein_coding-intron (ENSMUSG00000021108.18, intron 1 of 13) 7308 ENSMUSG00000021108.18 ENSMUSG00000021108 ENSMUST00000220898 Prkch protein_coding Interval_41052 chr12 110829910 110831899 + 0 NA intron (ENSMUSG00000056458.16, intron 2 of 11) protein_coding-intron (ENSMUSG00000056458.16, intron 1 of 5) 10023 ENSMUSG00000056458.16 ENSMUSG00000056458 ENSMUST00000177224 Mok protein_coding Interval_87343 chr19 47842545 47843349 + 0 NA intron (ENSMUSG00000044948.17, intron 1 of 13) protein_coding-intron (ENSMUSG00000044948.17, intron 1 of 13) -12091 ENSMUSG00000025068.8 ENSMUSG00000025068 ENSMUST00000143694 Gsto1 protein_coding Interval_115834 chr4 105156790 105159749 + 0 NA intron (ENSMUSG00000028517.8, intron 1 of 5) protein_coding-intron (ENSMUSG00000028517.8, intron 1 of 5) 922 ENSMUSG00000028517.8 ENSMUSG00000028517 ENSMUST00000064139 Plpp3 protein_coding Interval_3601 chr1 59924441 59924935 + 0 NA intron (ENSMUSG00000041040.12, intron 1 of 7) protein_coding-intron (ENSMUSG00000041040.12, intron 1 of 7) -5000 ENSMUSG00000103696.1 ENSMUSG00000103696 ENSMUST00000191628 Gm37531 TEC Interval_25639 chr11 50354056 50354316 + 0 NA promoter-TSS (ENSMUSG00000050087.3) protein_coding-promoter-TSS (ENSMUSG00000050087.3) -276 ENSMUSG00000050087.3 ENSMUSG00000050087 ENSMUST00000052596 Cby3 protein_coding Interval_131652 chr5 139074856 139075415 + 0 NA intron (ENSMUSG00000025855.13, intron 3 of 6) protein_coding-intron (ENSMUSG00000025855.13, intron 4 of 10) 74866 ENSMUSG00000025855.13 ENSMUSG00000025855 ENSMUST00000130180 Prkar1b protein_coding Interval_135073 chr6 35188335 35188887 + 0 NA intron (ENSMUSG00000038759.15, intron 3 of 14) protein_coding-intron (ENSMUSG00000038759.15, intron 3 of 42) 10995 ENSMUSG00000038759.15 ENSMUSG00000038759 ENSMUST00000200739 Nup205 protein_coding Interval_168820 chr9 87510018 87511089 + 0 NA Intergenic Intergenic 12441 ENSMUSG00000102683.1 ENSMUSG00000102683 ENSMUST00000193859 Gm37375 TEC Interval_36148 chr12 36381274 36382891 + 0 NA promoter-TSS (ENSMUSG00000091007.1) lincRNA-promoter-TSS (ENSMUSG00000091007.1) 99 ENSMUSG00000091007.1 ENSMUSG00000091007 ENSMUST00000171007 D630036H23Rik lincRNA Interval_162592 chr9 5498170 5498541 + 0 NA Intergenic Intergenic 152879 ENSMUSG00000025887.10 ENSMUSG00000025887 ENSMUST00000151332 Casp12 protein_coding Interval_80371 chr18 40228046 40229120 + 0 NA Intergenic Intergenic -9240 ENSMUSG00000024487.5 ENSMUSG00000024487 ENSMUST00000237176 Yipf5 protein_coding Interval_99923 chr2 165833404 165834104 + 0 NA intron (ENSMUSG00000039671.18, intron 9 of 22) protein_coding-intron (ENSMUSG00000039671.18, intron 10 of 23) -23930 ENSMUSG00000085274.1 ENSMUSG00000085274 ENSMUST00000155786 BC046401 processed_transcript Interval_136913 chr6 64383677 64384752 + 0 NA intron (ENSMUSG00000071424.10, intron 11 of 15) protein_coding-intron (ENSMUSG00000071424.10, intron 11 of 15) -29434 ENSMUSG00000064775.1 ENSMUSG00000064775 ENSMUST00000082841 Gm25205 snRNA Interval_160254 chr8 107488757 107489190 + 0 NA intron (ENSMUSG00000031930.11, intron 6 of 7) protein_coding-intron (ENSMUSG00000031930.11, intron 6 of 23) -44281 ENSMUSG00000110501.1 ENSMUSG00000110501 ENSMUST00000211879 Gm45900 processed_pseudogene Interval_135026 chr6 34759070 34759330 + 0 NA intron (ENSMUSG00000029761.16, intron 6 of 12) protein_coding-intron (ENSMUSG00000029761.16, intron 7 of 12) -3660 ENSMUSG00000029761.16 ENSMUSG00000029761 ENSMUST00000132331 Cald1 protein_coding Interval_118917 chr4 134447693 134448342 + 0 NA TTS (ENSMUSG00000087343.1) antisense-TTS (ENSMUSG00000087343.1) 2154 ENSMUSG00000087343.1 ENSMUSG00000087343 ENSMUST00000131110 1700021N21Rik antisense Interval_119966 chr4 141142358 141142811 + 0 NA Intergenic Intergenic -2857 ENSMUSG00000040842.17 ENSMUSG00000040842 ENSMUST00000128444 Szrd1 protein_coding Interval_137901 chr6 83237204 83237732 + 0 NA promoter-TSS (ENSMUSG00000068323.12) protein_coding-promoter-TSS (ENSMUSG00000068323.12) -39925 ENSMUSG00000068323.12 ENSMUSG00000068323 ENSMUST00000131432 Slc4a5 protein_coding Interval_56851 chr14 122433798 122434831 + 0 NA TTS (ENSMUSG00000064052.3) processed_transcript-TTS (ENSMUSG00000064052.3) 2581 ENSMUSG00000064052.3 ENSMUSG00000064052 ENSMUST00000238321 Gm5089 processed_transcript Interval_142159 chr6 137704336 137704764 + 0 NA Intergenic Intergenic -40490 ENSMUSG00000030224.10 ENSMUSG00000030224 ENSMUST00000137235 Strap protein_coding Interval_137870 chr6 83064595 83064815 + 0 NA intron (ENSMUSG00000009145.6, intron 9 of 11) protein_coding-intron (ENSMUSG00000009145.6, intron 9 of 11) 5520 ENSMUSG00000068327.5 ENSMUSG00000068327 ENSMUST00000089641 Tlx2 protein_coding Interval_79908 chr18 35847818 35850396 + 0 NA intron (ENSMUSG00000046668.9, intron 1 of 1) protein_coding-intron (ENSMUSG00000046668.9, intron 1 of 2) -13144 ENSMUSG00000117840.1 ENSMUSG00000117840 ENSMUST00000236587 Gm50399 lincRNA Interval_20116 chr10 115005461 115006504 + 0 NA Intergenic Intergenic 14441 ENSMUSG00000096208.1 ENSMUSG00000096208 ENSMUST00000178475 Gm22070 snRNA Interval_131731 chr5 139546317 139547796 + 0 NA exon (ENSMUSG00000029546.12, exon 3 of 3) protein_coding-exon (ENSMUSG00000029546.12, exon 3 of 3) 3158 ENSMUSG00000029546.12 ENSMUSG00000029546 ENSMUST00000174792 Uncx protein_coding Interval_35963 chr12 32893354 32893558 + 0 NA Intergenic Intergenic 15151 ENSMUSG00000112166.1 ENSMUSG00000112166 ENSMUST00000219636 Gm47948 lincRNA Interval_124215 chr5 41489443 41490474 + 0 NA Intergenic Intergenic -67914 ENSMUSG00000107135.1 ENSMUSG00000107135 ENSMUST00000201766 Gm43806 processed_pseudogene Interval_74241 chr17 47651889 47652135 + 0 NA TTS (ENSMUSG00000023984.17) protein_coding-TTS (ENSMUSG00000023984.17) -20708 ENSMUSG00000090115.7 ENSMUSG00000090115 ENSMUST00000131550 Usp49 protein_coding Interval_100970 chr2 173737251 173738065 + 0 NA exon (ENSMUSG00000054455.5, exon 1 of 6) protein_coding-exon (ENSMUSG00000054455.5, exon 1 of 6) -12280 ENSMUSG00000118399.1 ENSMUSG00000118399 ENSMUST00000238291 Gm18917 processed_pseudogene Interval_89656 chr2 24123359 24123969 + 0 NA Intergenic Intergenic -27132 ENSMUSG00000061809.8 ENSMUSG00000061809 ENSMUST00000153338 Tbpl2 protein_coding Interval_146362 chr7 45521605 45523318 + 0 NA TTS (ENSMUSG00000023467.18) protein_coding-TTS (ENSMUSG00000023467.18) 1308 ENSMUSG00000040435.12 ENSMUSG00000040435 ENSMUST00000167273 Ppp1r15a protein_coding Interval_154005 chr8 11819959 11820236 + 0 NA intron (ENSMUSG00000031511.16, intron 17 of 18) protein_coding-intron (ENSMUSG00000031511.16, intron 17 of 17) 20303 ENSMUSG00000086500.1 ENSMUSG00000086500 ENSMUST00000152264 Gm15875 bidirectional_promoter_lncRNA Interval_96057 chr2 119494501 119494783 + 0 NA Intergenic Intergenic 14587 ENSMUSG00000082369.1 ENSMUSG00000082369 ENSMUST00000119645 Gm14208 processed_pseudogene Interval_90850 chr2 32961206 32962488 + 0 NA promoter-TSS (ENSMUSG00000026792.16) protein_coding-promoter-TSS (ENSMUSG00000026792.16) 118 ENSMUSG00000038900.17 ENSMUSG00000038900 ENSMUST00000144644 Rpl12 protein_coding Interval_73909 chr17 45432872 45434306 + 0 NA promoter-TSS (ENSMUSG00000097119.2) bidirectional_promoter_lncRNA-promoter-TSS (ENSMUSG00000097119.2) -48 ENSMUSG00000023932.9 ENSMUSG00000023932 ENSMUST00000232910 Cdc5l protein_coding Interval_83275 chr18 83347153 83348190 + 0 NA Intergenic Intergenic 7693 ENSMUSG00000088143.1 ENSMUSG00000088143 ENSMUST00000157518 Gm24720 snRNA Interval_4643 chr1 75616705 75617136 + 0 NA Intergenic Intergenic -7734 ENSMUSG00000082528.1 ENSMUSG00000082528 ENSMUST00000120832 Gm15182 processed_pseudogene Interval_170348 chr9 107326694 107327931 + 0 NA TTS (ENSMUSG00000032579.14) protein_coding-TTS (ENSMUSG00000032579.14) 3488 ENSMUSG00000032579.14 ENSMUSG00000032579 ENSMUST00000128895 Hemk1 protein_coding Interval_126054 chr5 77130330 77130854 + 0 NA Intergenic Intergenic -8244 ENSMUSG00000085858.1 ENSMUSG00000085858 ENSMUST00000156195 Gm15831 lincRNA Interval_11380 chr1 181393707 181393929 + 0 NA intron (ENSMUSG00000026514.14, intron 1 of 5) protein_coding-intron (ENSMUSG00000026514.14, intron 1 of 5) 6938 ENSMUSG00000089888.1 ENSMUSG00000089888 ENSMUST00000159474 Gm16547 processed_pseudogene Interval_31523 chr11 101155421 101156843 + 0 NA exon (ENSMUSG00000045007.9, exon 1 of 11) protein_coding-exon (ENSMUSG00000045007.9, exon 1 of 11) 225 ENSMUSG00000045007.9 ENSMUSG00000045007 ENSMUST00000043654 Tubg2 protein_coding Interval_167095 chr9 65214428 65215817 + 0 NA promoter-TSS (ENSMUSG00000032392.11) protein_coding-promoter-TSS (ENSMUSG00000032392.11) -13281 ENSMUSG00000095892.1 ENSMUSG00000095892 ENSMUST00000093721 Rnu5g snRNA Interval_147367 chr7 66190572 66190803 + 0 NA exon (ENSMUSG00000108686.1, exon 1 of 1) processed_pseudogene-exon (ENSMUSG00000108686.1, exon 1 of 1) 132 ENSMUSG00000108686.1 ENSMUSG00000108686 ENSMUST00000206648 Gm45080 processed_pseudogene Interval_174618 chrX 160146592 160147294 + 0 NA Intergenic Intergenic -17978 ENSMUSG00000031299.10 ENSMUSG00000031299 ENSMUST00000127535 Pdha1 protein_coding Interval_136871 chr6 62041987 62042472 + 0 NA intron (ENSMUSG00000039578.17, intron 10 of 10) protein_coding-intron (ENSMUSG00000039578.17, intron 9 of 9) 67131 ENSMUSG00000108246.1 ENSMUSG00000108246 ENSMUST00000203440 Gm43896 TEC Interval_22569 chr11 11836496 11837709 + 0 NA promoter-TSS (ENSMUSG00000020182.16) protein_coding-promoter-TSS (ENSMUSG00000020182.16) -28140 ENSMUSG00000035455.12 ENSMUSG00000035455 ENSMUST00000150714 Fignl1 protein_coding Interval_95594 chr2 112609715 112610285 + 0 NA intron (ENSMUSG00000003604.14, intron 1 of 4) protein_coding-intron (ENSMUSG00000003604.14, intron 2 of 5) -4030 ENSMUSG00000105420.1 ENSMUSG00000105420 ENSMUST00000199821 Gm44374 miRNA Interval_172348 chrX 13303558 13303946 + 0 NA exon (ENSMUSG00000081255.1, exon 1 of 1) processed_pseudogene-exon (ENSMUSG00000081255.1, exon 1 of 1) 1467 ENSMUSG00000081255.1 ENSMUSG00000081255 ENSMUST00000119296 Gm5380 processed_pseudogene Interval_135151 chr6 36943048 36943262 + 0 NA intron (ENSMUSG00000029837.2, intron 2 of 4) antisense-intron (ENSMUSG00000029837.2, intron 2 of 4) 6107 ENSMUSG00000029837.2 ENSMUSG00000029837 ENSMUST00000031863 1700111E14Rik antisense Interval_147351 chr7 66045924 66046166 + 0 NA intron (ENSMUSG00000108793.1, intron 1 of 2) protein_coding-intron (ENSMUSG00000030513.14, intron 20 of 21) 2443 ENSMUSG00000108793.1 ENSMUSG00000108793 ENSMUST00000206065 Gm45213 protein_coding Interval_144160 chr7 19722639 19722984 + 0 NA intron (ENSMUSG00000062300.14, intron 5 of 8) protein_coding-intron (ENSMUSG00000062300.14, intron 5 of 8) 7795 ENSMUSG00000092381.1 ENSMUSG00000092381 ENSMUST00000172483 Gm20512 antisense Interval_174152 chrX 136707746 136709096 + 0 NA intron (ENSMUSG00000049536.5, intron 1 of 1) protein_coding-intron (ENSMUSG00000049536.5, intron 1 of 1) 439 ENSMUSG00000049536.5 ENSMUSG00000049536 ENSMUST00000055104 Tceal1 protein_coding Interval_90090 chr2 27895230 27896034 + 0 NA intron (ENSMUSG00000026837.16, intron 1 of 65) protein_coding-intron (ENSMUSG00000026837.16, intron 1 of 65) -8580 ENSMUSG00000085766.1 ENSMUSG00000085766 ENSMUST00000154246 2810430I11Rik processed_transcript Interval_34679 chr12 8640750 8641608 + 0 NA Intergenic Intergenic -32955 ENSMUSG00000020594.14 ENSMUSG00000020594 ENSMUST00000171608 Pum2 protein_coding Interval_171123 chr9 114648662 114648882 + 0 NA promoter-TSS (ENSMUSG00000111744.1) processed_pseudogene-promoter-TSS (ENSMUSG00000111744.1) -737 ENSMUSG00000111744.1 ENSMUSG00000111744 ENSMUST00000214787 Gm7780 processed_pseudogene Interval_168253 chr9 78210760 78211870 + 0 NA Intergenic Intergenic 3530 ENSMUSG00000111015.1 ENSMUSG00000111015 ENSMUST00000216513 Gm3126 processed_pseudogene Interval_146798 chr7 51815775 51816205 + 0 NA Intergenic Intergenic -34314 ENSMUSG00000108842.1 ENSMUSG00000108842 ENSMUST00000208279 Gm45001 TEC Interval_127713 chr5 106994453 106995251 + 0 NA Intergenic Intergenic 20306 ENSMUSG00000029283.17 ENSMUSG00000029283 ENSMUST00000123546 Cdc7 protein_coding Interval_15601 chr10 52252150 52252341 + 0 NA intron (ENSMUSG00000019891.15, intron 1 of 9) protein_coding-intron (ENSMUSG00000019891.15, intron 1 of 10) 18608 ENSMUSG00000019891.15 ENSMUSG00000019891 ENSMUST00000218582 Dcbld1 protein_coding Interval_152862 chr7 138884560 138885899 + 0 NA Intergenic Intergenic -5735 ENSMUSG00000109881.1 ENSMUSG00000109881 ENSMUST00000210611 Gm45507 antisense Interval_120972 chr4 151999391 151999904 + 0 NA Intergenic Intergenic -3389 ENSMUSG00000047777.9 ENSMUSG00000047777 ENSMUST00000055688 Phf13 protein_coding Interval_146545 chr7 46753929 46754174 + 0 NA exon (ENSMUSG00000057465.5, exon 4 of 4) protein_coding-exon (ENSMUSG00000057465.5, exon 4 of 4) 2180 ENSMUSG00000057465.5 ENSMUSG00000057465 ENSMUST00000211766 Saa2 protein_coding Interval_69180 chr16 91166734 91167330 + 0 NA Intergenic Intergenic -7943 ENSMUSG00000116763.1 ENSMUSG00000116763 ENSMUST00000231396 Gm41492 lincRNA Interval_17889 chr10 80610930 80611449 + 0 NA TTS (ENSMUSG00000113949.1) protein_coding-TTS (ENSMUSG00000113949.1) 1929 ENSMUSG00000099283.1 ENSMUSG00000099283 ENSMUST00000184456 Mir6912 miRNA Interval_62298 chr15 89547415 89549101 + 0 NA exon (ENSMUSG00000022623.17, exon 1 of 3) protein_coding-exon (ENSMUSG00000022623.17, exon 1 of 3) -8444 ENSMUSG00000022623.17 ENSMUSG00000022623 ENSMUST00000238458 Shank3 protein_coding Interval_31377 chr11 100330171 100330566 + 0 NA Intergenic Intergenic -4039 ENSMUSG00000017165.1 ENSMUSG00000017165 ENSMUST00000017309 Gast protein_coding Interval_129252 chr5 118448986 118449799 + 0 NA Intergenic Intergenic -30574 ENSMUSG00000093041.1 ENSMUSG00000093041 ENSMUST00000175300 Gm26455 miRNA Interval_106148 chr3 93694012 93695834 + 0 NA Intergenic Intergenic -1853 ENSMUSG00000103350.1 ENSMUSG00000103350 ENSMUST00000193565 Tdpoz6 protein_coding Interval_121577 chr5 3549379 3549582 + 0 NA intron (ENSMUSG00000058503.11, intron 1 of 10) protein_coding-intron (ENSMUSG00000058503.11, intron 1 of 10) 5443 ENSMUSG00000105656.1 ENSMUSG00000105656 ENSMUST00000198296 Gm43017 sense_intronic Interval_84088 chr19 7142022 7142471 + 0 NA intron (ENSMUSG00000036278.7, intron 3 of 10) protein_coding-intron (ENSMUSG00000036278.7, intron 3 of 10) -36517 ENSMUSG00000047787.8 ENSMUSG00000047787 ENSMUST00000113383 Flrt1 protein_coding Interval_129782 chr5 122318051 122320112 + 0 NA intron (ENSMUSG00000038582.15, intron 4 of 5) protein_coding-intron (ENSMUSG00000038582.15, intron 4 of 5) 16659 ENSMUSG00000083909.1 ENSMUSG00000083909 ENSMUST00000120513 Gm15842 processed_pseudogene Interval_173648 chrX 101451168 101452171 + 0 NA promoter-TSS (ENSMUSG00000031312.5) protein_coding-promoter-TSS (ENSMUSG00000031312.5) -442 ENSMUSG00000031312.5 ENSMUSG00000031312 ENSMUST00000143946 Itgb1bp2 protein_coding Interval_49679 chr13 113949543 113949798 + 0 NA intron (ENSMUSG00000042348.10, intron 4 of 5) protein_coding-intron (ENSMUSG00000042348.10, intron 3 of 4) 155077 ENSMUSG00000042348.10 ENSMUSG00000042348 ENSMUST00000224068 Arl15 protein_coding Interval_145662 chr7 36974009 36975688 + 0 NA Intergenic Intergenic 153844 ENSMUSG00000101342.1 ENSMUSG00000101342 ENSMUST00000190381 Gm28078 lincRNA Interval_158214 chr8 79879344 79879631 + 0 NA Intergenic Intergenic -15408 ENSMUSG00000110188.1 ENSMUSG00000110188 ENSMUST00000210391 Gm45432 processed_pseudogene Interval_154921 chr8 25074517 25076385 + 0 NA intron (ENSMUSG00000031557.16, intron 1 of 4) protein_coding-intron (ENSMUSG00000031557.16, intron 2 of 11) 26703 ENSMUSG00000031557.16 ENSMUSG00000031557 ENSMUST00000125466 Plekha2 protein_coding Interval_54445 chr14 69812997 69813455 + 0 NA Intergenic Intergenic -8001 ENSMUSG00000022075.7 ENSMUSG00000022075 ENSMUST00000225088 Rhobtb2 protein_coding Interval_141191 chr6 125494150 125495377 + 0 NA promoter-TSS (ENSMUSG00000030342.8) protein_coding-promoter-TSS (ENSMUSG00000030342.8) 335 ENSMUSG00000101162.2 ENSMUSG00000101162 ENSMUST00000185268 Gm26728 processed_transcript Interval_11583 chr1 182974862 182975771 + 0 NA promoter-TSS (ENSMUSG00000104367.1) lincRNA-promoter-TSS (ENSMUSG00000104367.1) -960 ENSMUSG00000104367.1 ENSMUSG00000104367 ENSMUST00000195603 Gm38079 lincRNA Interval_86727 chr19 43427068 43427978 + 0 NA Intergenic Intergenic 12937 ENSMUSG00000114742.1 ENSMUSG00000114742 ENSMUST00000225283 Gm47936 antisense Interval_139919 chr6 112728612 112729428 + 0 NA intron (ENSMUSG00000030257.16, intron 20 of 21) protein_coding-intron (ENSMUSG00000030257.16, intron 20 of 21) -32387 ENSMUSG00000030254.16 ENSMUSG00000030254 ENSMUST00000135092 Rad18 protein_coding Interval_21014 chr10 123257601 123257958 + 0 NA Intergenic Intergenic -6297 ENSMUSG00000044071.9 ENSMUSG00000044071 ENSMUST00000219723 Tafa2 protein_coding Interval_151091 chr7 118497720 118497923 + 0 NA Intergenic Intergenic -5846 ENSMUSG00000095115.2 ENSMUSG00000095115 ENSMUST00000178344 Itpripl2 protein_coding Interval_129358 chr5 119482713 119483189 + 0 NA Intergenic Intergenic 45003 ENSMUSG00000106938.1 ENSMUSG00000106938 ENSMUST00000201435 Gm31314 lincRNA Interval_46275 chr13 63304295 63305862 + 0 NA exon (ENSMUSG00000021461.17, exon 16 of 16) protein_coding-exon (ENSMUSG00000021461.17, exon 16 of 16) -3795 ENSMUSG00000092741.2 ENSMUSG00000092741 ENSMUST00000175000 Mir3074-1 miRNA Interval_116694 chr4 116696086 116696631 + 0 NA intron (ENSMUSG00000028691.12, intron 5 of 5) protein_coding-intron (ENSMUSG00000028691.12, intron 4 of 4) 10759 ENSMUSG00000028691.12 ENSMUSG00000028691 ENSMUST00000030454 Prdx1 protein_coding Interval_42228 chr13 10359469 10361357 + 0 NA exon (ENSMUSG00000046159.16, exon 1 of 5) protein_coding-exon (ENSMUSG00000046159.16, exon 1 of 5) 434 ENSMUSG00000046159.16 ENSMUSG00000046159 ENSMUST00000190395 Chrm3 protein_coding Interval_121979 chr5 12910805 12911098 + 0 NA Intergenic Intergenic -29419 ENSMUSG00000094310.1 ENSMUSG00000094310 ENSMUST00000180047 Gm23243 miRNA Interval_127643 chr5 106055229 106055598 + 0 NA Intergenic Intergenic 17020 ENSMUSG00000095052.1 ENSMUSG00000095052 ENSMUST00000180111 Gm25672 snRNA Interval_117612 chr4 125054957 125055204 + 0 NA TTS (ENSMUSG00000042707.6) protein_coding-TTS (ENSMUSG00000042707.6) 1929 ENSMUSG00000028869.13 ENSMUSG00000028869 ENSMUST00000147550 Gnl2 protein_coding Interval_34259 chr11 121701920 121703876 + 0 NA intron (ENSMUSG00000039208.15, intron 1 of 3) protein_coding-intron (ENSMUSG00000039208.15, intron 1 of 3) 135 ENSMUSG00000039208.15 ENSMUSG00000039208 ENSMUST00000125580 Metrnl protein_coding Interval_124872 chr5 58088550 58088760 + 0 NA intron (ENSMUSG00000029108.14, intron 3 of 3) protein_coding-intron (ENSMUSG00000029108.14, intron 2 of 2) -32784 ENSMUSG00000105049.1 ENSMUSG00000105049 ENSMUST00000200369 Gm42486 TEC Interval_57031 chr15 4775350 4776097 + 0 NA intron (ENSMUSG00000022181.16, intron 1 of 3) protein_coding-intron (ENSMUSG00000022181.16, intron 8 of 15) 9778 ENSMUSG00000022181.16 ENSMUSG00000022181 ENSMUST00000162729 C6 protein_coding Interval_150663 chr7 113171961 113173684 + 0 NA Intergenic Intergenic -30807 ENSMUSG00000110009.1 ENSMUSG00000110009 ENSMUST00000210408 4930543E12Rik lincRNA Interval_17413 chr10 76450575 76451033 + 0 NA intron (ENSMUSG00000009114.17, intron 2 of 7) protein_coding-intron (ENSMUSG00000009114.17, intron 2 of 7) 477 ENSMUSG00000009114.17 ENSMUSG00000009114 ENSMUST00000105415 2610028H24Rik protein_coding Interval_60223 chr15 68385031 68385248 + 0 NA Intergenic Intergenic -21963 ENSMUSG00000093387.1 ENSMUSG00000093387 ENSMUST00000175699 Gm20732 lincRNA Interval_35470 chr12 22880181 22880938 + 0 NA Intergenic Intergenic 1783 ENSMUSG00000113060.1 ENSMUSG00000113060 ENSMUST00000220571 Gm48041 processed_pseudogene Interval_171616 chr9 119571062 119572071 + 0 NA intron (ENSMUSG00000032511.17, intron 1 of 27) protein_coding-intron (ENSMUSG00000032511.17, intron 1 of 27) -8063 ENSMUSG00000032511.17 ENSMUSG00000032511 ENSMUST00000138934 Scn5a protein_coding Interval_70190 chr17 6046222 6046671 + 0 NA intron (ENSMUSG00000015659.12, intron 2 of 3) protein_coding-intron (ENSMUSG00000015659.12, intron 14 of 15) 3609 ENSMUSG00000015659.12 ENSMUSG00000015659 ENSMUST00000139542 Serac1 protein_coding Interval_105873 chr3 89853573 89854086 + 0 NA intron (ENSMUSG00000046280.9, intron 5 of 5) protein_coding-intron (ENSMUSG00000046280.9, intron 5 of 5) 15940 ENSMUSG00000046280.9 ENSMUSG00000046280 ENSMUST00000197454 She protein_coding Interval_171855 chr9 121791163 121792113 + 0 NA promoter-TSS (ENSMUSG00000032523.11) protein_coding-promoter-TSS (ENSMUSG00000032523.11) 216 ENSMUSG00000032523.11 ENSMUSG00000032523 ENSMUST00000217652 Hhatl protein_coding Interval_163573 chr9 22290579 22290794 + 0 NA intron (ENSMUSG00000066829.7, intron 3 of 3) protein_coding-intron (ENSMUSG00000066829.7, intron 3 of 7) 4886 ENSMUSG00000111292.1 ENSMUSG00000111292 ENSMUST00000216615 Gm48627 TEC Interval_25243 chr11 45835431 45836431 + 0 NA intron (ENSMUSG00000086686.1, intron 2 of 3) processed_transcript-intron (ENSMUSG00000086686.1, intron 2 of 3) 6152 ENSMUSG00000076031.1 ENSMUSG00000076031 ENSMUST00000102077 Gm22751 miRNA Interval_27379 chr11 67085387 67085714 + 0 NA intron (ENSMUSG00000020908.14, intron 9 of 39) protein_coding-intron (ENSMUSG00000020908.14, intron 9 of 39) 7250 ENSMUSG00000020908.14 ENSMUSG00000020908 ENSMUST00000165221 Myh3 protein_coding Interval_68506 chr16 78280569 78280902 + 0 NA intron (ENSMUSG00000109841.2, intron 1 of 2) processed_transcript-intron (ENSMUSG00000109841.2, intron 1 of 2) 14252 ENSMUSG00000109841.2 ENSMUSG00000109841 ENSMUST00000210555 E330011O21Rik processed_transcript Interval_135983 chr6 49237956 49238241 + 0 NA Intergenic Intergenic -16753 ENSMUSG00000107962.1 ENSMUSG00000107962 ENSMUST00000204899 Gm43980 TEC Interval_7004 chr1 121737065 121738541 + 0 NA Intergenic Intergenic 31288 ENSMUSG00000102488.1 ENSMUSG00000102488 ENSMUST00000192952 Gm37920 TEC Interval_81812 chr18 64945811 64946051 + 0 NA intron (ENSMUSG00000024589.18, intron 1 of 29) protein_coding-intron (ENSMUSG00000024589.18, intron 1 of 29) 55244 ENSMUSG00000117895.1 ENSMUSG00000117895 ENSMUST00000237218 Gm50368 antisense Interval_143879 chr7 16894858 16895384 + 0 NA exon (ENSMUSG00000063594.5, exon 1 of 1) protein_coding-exon (ENSMUSG00000063594.5, exon 1 of 1) 176 ENSMUSG00000063594.5 ENSMUSG00000063594 ENSMUST00000206998 Gng8 protein_coding Interval_44615 chr13 46726823 46728831 + 0 NA exon (ENSMUSG00000021374.10, exon 1 of 22) protein_coding-exon (ENSMUSG00000021374.10, exon 1 of 22) -20010 ENSMUSG00000021374.10 ENSMUSG00000021374 ENSMUST00000183299 Nup153 protein_coding Interval_136050 chr6 50328529 50329683 + 0 NA intron (ENSMUSG00000029822.15, intron 11 of 19) protein_coding-intron (ENSMUSG00000029822.15, intron 11 of 21) 22851 ENSMUSG00000029822.15 ENSMUSG00000029822 ENSMUST00000154333 Osbpl3 protein_coding Interval_103123 chr3 35719776 35722310 + 0 NA Intergenic Intergenic -14330 ENSMUSG00000064834.1 ENSMUSG00000064834 ENSMUST00000082900 Gm25696 snRNA Interval_48088 chr13 95921020 95922345 + 0 NA Intergenic Intergenic -24562 ENSMUSG00000065866.1 ENSMUSG00000065866 ENSMUST00000083932 Gm24032 snRNA Interval_149146 chr7 95038224 95038470 + 0 NA Intergenic Intergenic -133517 ENSMUSG00000084636.1 ENSMUSG00000084636 ENSMUST00000122687 Gm23884 misc_RNA Interval_14041 chr10 25908211 25908558 + 0 NA Intergenic Intergenic 9105 ENSMUSG00000112324.1 ENSMUSG00000112324 ENSMUST00000219283 Gm47939 lincRNA Interval_61213 chr15 80005083 80006002 + 0 NA exon (ENSMUSG00000000489.7, exon 2 of 7) protein_coding-exon (ENSMUSG00000000489.7, exon 2 of 7) -6516 ENSMUSG00000099222.1 ENSMUSG00000099222 ENSMUST00000183847 Mir7213 miRNA Interval_157014 chr8 64446722 64447063 + 0 NA Intergenic Intergenic -29792 ENSMUSG00000109579.1 ENSMUSG00000109579 ENSMUST00000211285 Gm35521 lincRNA Interval_23123 chr11 20057475 20057839 + 0 NA Intergenic Intergenic 55252 ENSMUSG00000020152.7 ENSMUSG00000020152 ENSMUST00000134779 Actr2 protein_coding Interval_64899 chr16 17074684 17075187 + 0 NA intron (ENSMUSG00000022773.19, intron 2 of 2) protein_coding-intron (ENSMUSG00000022773.19, intron 1 of 4) -2901 ENSMUSG00000022773.19 ENSMUSG00000022773 ENSMUST00000239090 Ypel1 protein_coding Interval_78008 chr18 6638093 6639911 + 0 NA TTS (ENSMUSG00000039540.9) protein_coding-TTS (ENSMUSG00000039540.9) 35373 ENSMUSG00000039540.9 ENSMUSG00000039540 ENSMUST00000234337 4921524L21Rik protein_coding Interval_12509 chr1 194618892 194620935 + 0 NA promoter-TSS (ENSMUSG00000026640.12) protein_coding-promoter-TSS (ENSMUSG00000026640.12) 1695 ENSMUSG00000026640.12 ENSMUSG00000026640 ENSMUST00000124785 Plxna2 protein_coding Interval_21304 chr10 127749208 127750808 + 0 NA exon (ENSMUSG00000058396.7, exon 2 of 2) protein_coding-exon (ENSMUSG00000058396.7, exon 2 of 2) 1724 ENSMUSG00000058396.7 ENSMUSG00000058396 ENSMUST00000079692 Gpr182 protein_coding Interval_20230 chr10 116301256 116302159 + 0 NA intron (ENSMUSG00000020154.10, intron 1 of 31) protein_coding-intron (ENSMUSG00000020154.10, intron 1 of 31) 17158 ENSMUSG00000112461.1 ENSMUSG00000112461 ENSMUST00000219933 Gm47625 TEC Interval_172283 chrX 12308180 12308450 + 0 NA Intergenic Intergenic 46681 ENSMUSG00000087591.7 ENSMUSG00000087591 ENSMUST00000137281 Gm14635 lincRNA Interval_38117 chr12 75746056 75746319 + 0 NA Intergenic Intergenic -10491 ENSMUSG00000021054.6 ENSMUSG00000021054 ENSMUST00000220285 Sgpp1 protein_coding Interval_14564 chr10 35852368 35852629 + 0 NA intron (ENSMUSG00000111550.1, intron 9 of 9) processed_pseudogene-intron (ENSMUSG00000110865.1, intron 1 of 1) 6952 ENSMUSG00000110865.1 ENSMUSG00000110865 ENSMUST00000213320 Gm47046 processed_pseudogene Interval_164495 chr9 37470830 37471036 + 0 NA Intergenic Intergenic 7710 ENSMUSG00000111702.1 ENSMUSG00000111702 ENSMUST00000214167 Gm47945 unprocessed_pseudogene Interval_44367 chr13 44316818 44318258 + 0 NA Intergenic Intergenic -37089 ENSMUSG00000113689.1 ENSMUSG00000113689 ENSMUST00000222409 Gm29676 lincRNA Interval_103154 chr3 36046137 36046549 + 0 NA intron (ENSMUSG00000047696.16, intron 3 of 11) protein_coding-intron (ENSMUSG00000047696.16, intron 3 of 10) 7204 ENSMUSG00000047696.16 ENSMUSG00000047696 ENSMUST00000196964 Ccdc144b protein_coding Interval_32359 chr11 107144102 107144663 + 0 NA Intergenic Intergenic -13026 ENSMUSG00000087596.1 ENSMUSG00000087596 ENSMUST00000129501 Gm11715 antisense Interval_53164 chr14 54835535 54836346 + 0 NA intron (ENSMUSG00000112858.2, intron 4 of 15) protein_coding-intron (ENSMUSG00000112858.2, intron 4 of 14) -9264 ENSMUSG00000086420.1 ENSMUSG00000086420 ENSMUST00000125697 Gm8865 processed_pseudogene Interval_41980 chr13 5849048 5849272 + 0 NA Intergenic Intergenic 8401 ENSMUSG00000100625.7 ENSMUSG00000100625 ENSMUST00000223142 1700016G22Rik lincRNA Interval_123893 chr5 36351914 36352150 + 0 NA intron (ENSMUSG00000029093.14, intron 1 of 4) protein_coding-intron (ENSMUSG00000029093.14, intron 1 of 26) 13886 ENSMUSG00000029093.14 ENSMUSG00000029093 ENSMUST00000141508 Sorcs2 protein_coding Interval_77971 chr18 6268727 6270361 + 0 NA Intergenic Intergenic -28408 ENSMUSG00000006740.14 ENSMUSG00000006740 ENSMUST00000170959 Kif5b protein_coding Interval_30999 chr11 97644818 97645929 + 0 NA exon (ENSMUSG00000085586.1, exon 3 of 4) processed_transcript-exon (ENSMUSG00000085586.1, exon 3 of 4) 14954 ENSMUSG00000093004.1 ENSMUSG00000093004 ENSMUST00000175263 Gm24158 miRNA Interval_125653 chr5 73056252 73057124 + 0 NA intron (ENSMUSG00000070733.13, intron 7 of 20) protein_coding-intron (ENSMUSG00000070733.13, intron 46 of 59) -11534 ENSMUSG00000107171.1 ENSMUSG00000107171 ENSMUST00000202292 Gm42572 TEC Interval_15842 chr10 58346181 58346414 + 0 NA intron (ENSMUSG00000019920.18, intron 1 of 9) protein_coding-intron (ENSMUSG00000019920.18, intron 1 of 9) 3307 ENSMUSG00000070214.1 ENSMUSG00000070214 ENSMUST00000093703 Gm23058 snRNA Interval_163532 chr9 21936598 21937405 + 0 NA promoter-TSS (ENSMUSG00000040563.13) protein_coding-promoter-TSS (ENSMUSG00000040563.13) -1273 ENSMUSG00000040563.13 ENSMUSG00000040563 ENSMUST00000188468 Plppr2 protein_coding Interval_16349 chr10 62398158 62399077 + 0 NA exon (ENSMUSG00000020080.8, exon 12 of 18) protein_coding-exon (ENSMUSG00000020080.8, exon 12 of 18) 23791 ENSMUSG00000020080.8 ENSMUSG00000020080 ENSMUST00000159579 Hkdc1 protein_coding Interval_72857 chr17 32711260 32711681 + 0 NA Intergenic Intergenic -19540 ENSMUSG00000117651.1 ENSMUSG00000117651 ENSMUST00000233998 Gm6452 processed_pseudogene Interval_8622 chr1 144179701 144179922 + 0 NA Intergenic Intergenic -2536 ENSMUSG00000051079.8 ENSMUSG00000051079 ENSMUST00000111941 Rgs13 protein_coding Interval_171557 chr9 119194062 119194270 + 0 NA intron (ENSMUSG00000074028.4, intron 8 of 9) protein_coding-intron (ENSMUSG00000074028.4, intron 8 of 9) 14932 ENSMUSG00000074028.4 ENSMUSG00000074028 ENSMUST00000084797 Slc22a13 protein_coding Interval_167043 chr9 64779482 64780035 + 0 NA Intergenic Intergenic -53028 ENSMUSG00000104953.1 ENSMUSG00000104953 ENSMUST00000197528 Gm47308 miRNA Interval_128361 chr5 112773518 112773941 + 0 NA exon (ENSMUSG00000072720.9, exon 29 of 29) protein_coding-exon (ENSMUSG00000072720.9, exon 29 of 29) -19603 ENSMUSG00000098230.7 ENSMUSG00000098230 ENSMUST00000189887 1700095B10Rik antisense Interval_59250 chr15 49844213 49845264 + 0 NA Intergenic Intergenic -68644 ENSMUSG00000115446.1 ENSMUSG00000115446 ENSMUST00000227486 Gm49186 processed_pseudogene Interval_41435 chr12 113896337 113896784 + 0 NA exon (ENSMUSG00000076665.4, exon 2 of 2) IG_V_gene-exon (ENSMUSG00000076665.4, exon 2 of 2) 386 ENSMUSG00000076665.4 ENSMUSG00000076665 ENSMUST00000103474 Ighv7-1 IG_V_gene Interval_118936 chr4 134549849 134550154 + 0 NA intron (ENSMUSG00000050989.9, intron 2 of 11) protein_coding-intron (ENSMUSG00000050989.9, intron 2 of 11) -8979 ENSMUSG00000050989.9 ENSMUSG00000050989 ENSMUST00000127585 Selenon protein_coding Interval_94612 chr2 92658386 92658970 + 0 NA Intergenic Intergenic 58971 ENSMUSG00000027221.5 ENSMUSG00000027221 ENSMUST00000065797 Chst1 protein_coding Interval_162002 chr8 124367966 124368461 + 0 NA TTS (ENSMUSG00000050751.14) protein_coding-TTS (ENSMUSG00000050751.14) 10975 ENSMUSG00000064664.1 ENSMUSG00000064664 ENSMUST00000082730 Gm24459 snRNA Interval_152331 chr7 131897541 131897851 + 0 NA intron (ENSMUSG00000030849.18, intron 2 of 6) protein_coding-intron (ENSMUSG00000030849.18, intron 2 of 6) 34958 ENSMUSG00000109340.1 ENSMUSG00000109340 ENSMUST00000208929 Gm44548 processed_pseudogene Interval_29052 chr11 80069357 80070115 + 0 NA intron (ENSMUSG00000017561.16, intron 1 of 3) protein_coding-intron (ENSMUSG00000017561.16, intron 1 of 7) 11125 ENSMUSG00000017561.16 ENSMUSG00000017561 ENSMUST00000178280 Crlf3 protein_coding Interval_60756 chr15 76552625 76553447 + 0 NA Intergenic Intergenic 14072 ENSMUSG00000022560.9 ENSMUSG00000022560 ENSMUST00000230994 Slc52a2 protein_coding Interval_29410 chr11 83802327 83802518 + 0 NA Intergenic Intergenic 1958 ENSMUSG00000081342.1 ENSMUSG00000081342 ENSMUST00000122379 Gm11434 processed_pseudogene Interval_128663 chr5 114590679 114590882 + 0 NA intron (ENSMUSG00000041930.7, intron 1 of 1) protein_coding-intron (ENSMUSG00000041930.7, intron 1 of 2) 22763 ENSMUSG00000041930.7 ENSMUSG00000041930 ENSMUST00000130983 Fam222a protein_coding Interval_63474 chr15 101291251 101291931 + 0 NA TTS (ENSMUSG00000037204.7) protein_coding-TTS (ENSMUSG00000037204.7) -1641 ENSMUSG00000075408.5 ENSMUSG00000075408 ENSMUST00000191426 Smim41 protein_coding Interval_137551 chr6 73132759 73133652 + 0 NA intron (ENSMUSG00000052861.13, intron 32 of 75) protein_coding-intron (ENSMUSG00000052861.13, intron 33 of 76) 8475 ENSMUSG00000065072.1 ENSMUSG00000065072 ENSMUST00000083138 Gm24533 snoRNA Interval_173013 chrX 62747613 62748032 + 0 NA Intergenic Intergenic 28863 ENSMUSG00000081752.3 ENSMUSG00000081752 ENSMUST00000121773 Sms-ps processed_pseudogene Interval_162980 chr9 14089637 14090230 + 0 NA promoter-TSS (ENSMUSG00000111489.1) lincRNA-promoter-TSS (ENSMUSG00000111489.1) 313 ENSMUSG00000111489.1 ENSMUSG00000111489 ENSMUST00000214881 1700019J19Rik lincRNA Interval_57726 chr15 16914668 16915801 + 0 NA Intergenic Intergenic -64270 ENSMUSG00000115460.1 ENSMUSG00000115460 ENSMUST00000227900 Gm49127 antisense Interval_116834 chr4 117574671 117574946 + 0 NA intron (ENSMUSG00000033423.16, intron 1 of 7) protein_coding-intron (ENSMUSG00000033423.16, intron 3 of 8) 4674 ENSMUSG00000087807.1 ENSMUSG00000087807 ENSMUST00000157182 Gm25559 miRNA Interval_54092 chr14 65173498 65174235 + 0 NA promoter-TSS (ENSMUSG00000114693.1) lincRNA-promoter-TSS (ENSMUSG00000114693.1) -203 ENSMUSG00000114693.1 ENSMUSG00000114693 ENSMUST00000225755 Gm41177 lincRNA Interval_13830 chr10 23450577 23451387 + 0 NA Intergenic Intergenic -100196 ENSMUSG00000010461.15 ENSMUSG00000010461 ENSMUST00000218956 Eya4 protein_coding Interval_125815 chr5 74535259 74536065 + 0 NA promoter-TSS (ENSMUSG00000029227.15) protein_coding-promoter-TSS (ENSMUSG00000029227.15) -40285 ENSMUSG00000107165.1 ENSMUSG00000107165 ENSMUST00000201412 Gm43747 TEC Interval_103109 chr3 35437600 35439363 + 0 NA Intergenic Intergenic 24648 ENSMUSG00000106512.1 ENSMUSG00000106512 ENSMUST00000197222 Gm43078 TEC Interval_158917 chr8 87937860 87940086 + 0 NA intron (ENSMUSG00000045333.15, intron 1 of 7) protein_coding-intron (ENSMUSG00000045333.15, intron 1 of 7) 14889 ENSMUSG00000045333.15 ENSMUSG00000045333 ENSMUST00000173092 Zfp423 protein_coding Interval_26502 chr11 58194042 58194360 + 0 NA Intergenic Intergenic -5387 ENSMUSG00000078853.8 ENSMUSG00000078853 ENSMUST00000168280 Igtp protein_coding Interval_138068 chr6 84942230 84942510 + 0 NA intron (ENSMUSG00000033769.16, intron 5 of 13) protein_coding-intron (ENSMUSG00000033769.16, intron 6 of 16) 21247 ENSMUSG00000108012.1 ENSMUSG00000108012 ENSMUST00000204154 Gm44012 antisense Interval_143752 chr7 16078698 16078979 + 0 NA exon (ENSMUSG00000078796.4, exon 3 of 16) protein_coding-exon (ENSMUSG00000078796.4, exon 3 of 16) 6917 ENSMUSG00000078796.4 ENSMUSG00000078796 ENSMUST00000108509 Zfp541 protein_coding Interval_174016 chrX 129728753 129729281 + 0 NA Intergenic Intergenic -20725 ENSMUSG00000034480.18 ENSMUSG00000034480 ENSMUST00000133457 Diaph2 protein_coding Interval_156133 chr8 45023248 45023736 + 0 NA exon (ENSMUSG00000070047.14, exon 9 of 26) protein_coding-exon (ENSMUSG00000070047.14, exon 9 of 26) -1107 ENSMUSG00000097491.1 ENSMUSG00000097491 ENSMUST00000180753 Gm2366 antisense Interval_162920 chr9 13219267 13219482 + 0 NA Intergenic Intergenic 26455 ENSMUSG00000079083.3 ENSMUSG00000079083 ENSMUST00000110582 Jrkl protein_coding Interval_30783 chr11 96436323 96436764 + 0 NA Intergenic Intergenic 28004 ENSMUSG00000075586.4 ENSMUSG00000075586 ENSMUST00000153012 Gm11529 processed_transcript Interval_99196 chr2 157943543 157944804 + 0 NA exon (ENSMUSG00000037843.6, exon 4 of 4) protein_coding-exon (ENSMUSG00000037843.6, exon 4 of 4) 29520 ENSMUSG00000037843.6 ENSMUSG00000037843 ENSMUST00000109523 Vstm2l protein_coding Interval_40856 chr12 108893535 108894722 + 0 NA promoter-TSS (ENSMUSG00000040877.16) protein_coding-promoter-TSS (ENSMUSG00000040877.16) 15359 ENSMUSG00000112981.1 ENSMUSG00000112981 ENSMUST00000221779 5033424D13Rik TEC Interval_30452 chr11 94468394 94469836 + 0 NA intron (ENSMUSG00000020866.17, intron 1 of 22) protein_coding-intron (ENSMUSG00000020866.17, intron 1 of 34) 4526 ENSMUSG00000020866.17 ENSMUSG00000020866 ENSMUST00000152811 Cacna1g protein_coding Interval_6447 chr1 109087086 109087278 + 0 NA Intergenic Intergenic -88422 ENSMUSG00000100831.1 ENSMUSG00000100831 ENSMUST00000188261 Gm17847 processed_pseudogene Interval_58621 chr15 36619124 36619461 + 0 NA Intergenic Intergenic -9868 ENSMUSG00000115037.1 ENSMUSG00000115037 ENSMUST00000228278 Gm49262 lincRNA Interval_107335 chr3 105951270 105951587 + 0 NA intron (ENSMUSG00000000563.17, intron 6 of 7) protein_coding-intron (ENSMUSG00000000563.17, intron 6 of 7) 2753 ENSMUSG00000000563.17 ENSMUSG00000000563 ENSMUST00000123959 Atp5pb protein_coding Interval_87831 chr19 56343788 56344430 + 0 NA exon (ENSMUSG00000049134.15, exon 28 of 41) protein_coding-exon (ENSMUSG00000049134.15, exon 28 of 41) -20153 ENSMUSG00000090990.1 ENSMUSG00000090990 ENSMUST00000163160 Gm17197 antisense Interval_26564 chr11 58927822 58928941 + 0 NA Intergenic Intergenic 10429 ENSMUSG00000020490.16 ENSMUSG00000020490 ENSMUST00000108818 Btnl10 protein_coding Interval_158715 chr8 85517664 85518235 + 0 NA intron (ENSMUSG00000031700.11, intron 1 of 3) protein_coding-intron (ENSMUSG00000031700.11, intron 7 of 11) -1460 ENSMUSG00000031700.11 ENSMUSG00000031700 ENSMUST00000143846 Gpt2 protein_coding Interval_31604 chr11 101645050 101646434 + 0 NA TTS (ENSMUSG00000065251.1) snRNA-TTS (ENSMUSG00000065251.1) 188 ENSMUSG00000065251.1 ENSMUSG00000065251 ENSMUST00000083317 Gm23971 snRNA Interval_156364 chr8 47726751 47728673 + 0 NA Intergenic Intergenic 8466 ENSMUSG00000064508.1 ENSMUSG00000064508 ENSMUST00000082574 n-R5s96 rRNA Interval_108724 chr3 130729396 130731390 + 0 NA promoter-TSS (ENSMUSG00000062006.12) protein_coding-promoter-TSS (ENSMUSG00000062006.12) -47 ENSMUSG00000062006.12 ENSMUSG00000062006 ENSMUST00000200517 Rpl34 protein_coding Interval_111901 chr4 32365176 32365608 + 0 NA intron (ENSMUSG00000040270.16, intron 2 of 3) protein_coding-intron (ENSMUSG00000040270.16, intron 2 of 7) -52043 ENSMUSG00000040270.16 ENSMUSG00000040270 ENSMUST00000125263 Bach2 protein_coding Interval_77350 chr17 88123056 88123521 + 0 NA Intergenic Intergenic -2224 ENSMUSG00000058869.9 ENSMUSG00000058869 ENSMUST00000182679 Gm4832 transcribed_processed_pseudogene Interval_12163 chr1 190323855 190324224 + 0 NA Intergenic Intergenic -79606 ENSMUSG00000103644.1 ENSMUSG00000103644 ENSMUST00000193966 Gm29678 lincRNA Interval_4302 chr1 72569099 72569808 + 0 NA Intergenic Intergenic -13798 ENSMUSG00000039354.16 ENSMUSG00000039354 ENSMUST00000126832 Smarcal1 protein_coding Interval_102527 chr3 27500219 27500829 + 0 NA TTS (ENSMUSG00000039286.12) protein_coding-TTS (ENSMUSG00000039286.12) -46117 ENSMUSG00000106625.1 ENSMUSG00000106625 ENSMUST00000198723 Gm43344 TEC Interval_49860 chr13 117245625 117246305 + 0 NA intron (ENSMUSG00000021728.8, intron 3 of 3) protein_coding-intron (ENSMUSG00000021728.8, intron 2 of 8) -24893 ENSMUSG00000091423.2 ENSMUSG00000091423 ENSMUST00000238456 Gm17509 antisense Interval_18772 chr10 90421568 90421819 + 0 NA intron (ENSMUSG00000058589.14, intron 12 of 25) protein_coding-intron (ENSMUSG00000058589.14, intron 12 of 17) -29217 ENSMUSG00000088221.1 ENSMUSG00000088221 ENSMUST00000157596 Gm22602 snRNA Interval_20570 chr10 119114961 119115625 + 0 NA intron (ENSMUSG00000112609.1, intron 2 of 2) lincRNA-intron (ENSMUSG00000112609.1, intron 2 of 2) 3669 ENSMUSG00000112609.1 ENSMUSG00000112609 ENSMUST00000220151 Gm47480 lincRNA Interval_164733 chr9 40871402 40872446 + 0 NA Intergenic Intergenic -2203 ENSMUSG00000054360.4 ENSMUSG00000054360 ENSMUST00000067375 Bsx protein_coding Interval_167778 chr9 72674883 72675445 + 0 NA intron (ENSMUSG00000032216.15, intron 3 of 29) protein_coding-intron (ENSMUSG00000032216.15, intron 3 of 28) -12060 ENSMUSG00000104273.1 ENSMUSG00000104273 ENSMUST00000195338 A530064N14Rik TEC Interval_95154 chr2 104388708 104389494 + 0 NA intron (ENSMUSG00000068373.15, intron 1 of 20) protein_coding-intron (ENSMUSG00000068373.15, intron 1 of 20) 21912 ENSMUSG00000068373.15 ENSMUSG00000068373 ENSMUST00000149165 D430041D05Rik protein_coding Interval_123724 chr5 34908170 34909521 + 0 NA exon (ENSMUSG00000029104.15, exon 67 of 67) protein_coding-exon (ENSMUSG00000029104.15, exon 67 of 67) -6243 ENSMUSG00000051246.3 ENSMUSG00000051246 ENSMUST00000202205 Msantd1 protein_coding Interval_79211 chr18 25685226 25685700 + 0 NA intron (ENSMUSG00000024268.16, intron 1 of 12) protein_coding-intron (ENSMUSG00000024268.16, intron 1 of 12) -28307 ENSMUSG00000114511.1 ENSMUSG00000114511 ENSMUST00000224766 0710001A04Rik antisense Interval_110224 chr3 154570802 154572779 + 0 NA Intergenic Intergenic 25308 ENSMUSG00000047583.9 ENSMUSG00000047583 ENSMUST00000122976 Tyw3 protein_coding Interval_171895 chr9 122184826 122185532 + 0 NA intron (ENSMUSG00000037949.8, intron 12 of 12) protein_coding-intron (ENSMUSG00000037949.8, intron 12 of 12) 42730 ENSMUSG00000111434.1 ENSMUSG00000111434 ENSMUST00000213905 Gm47121 sense_intronic Interval_133099 chr5 149799752 149800268 + 0 NA Intergenic Intergenic 11741 ENSMUSG00000106740.1 ENSMUSG00000106740 ENSMUST00000202876 Gm21221 lincRNA Interval_3462 chr1 58562296 58563100 + 0 NA exon (ENSMUSG00000038174.14, exon 3 of 5) protein_coding-exon (ENSMUSG00000038174.14, exon 3 of 5) 2522 ENSMUSG00000038174.14 ENSMUSG00000038174 ENSMUST00000159185 Fam126b protein_coding Interval_110814 chr4 8703557 8703805 + 0 NA intron (ENSMUSG00000041235.12, intron 1 of 37) protein_coding-intron (ENSMUSG00000041235.12, intron 1 of 37) -30099 ENSMUSG00000082122.1 ENSMUSG00000082122 ENSMUST00000120923 Gm11809 processed_pseudogene Interval_66293 chr16 32939901 32940721 + 0 NA intron (ENSMUSG00000022801.13, intron 1 of 17) protein_coding-intron (ENSMUSG00000022801.13, intron 1 of 20) 17093 ENSMUSG00000091997.1 ENSMUSG00000091997 ENSMUST00000163830 Gm6611 processed_pseudogene Interval_69239 chr16 91618511 91619318 + 0 NA promoter-TSS (ENSMUSG00000039763.10) protein_coding-promoter-TSS (ENSMUSG00000039763.10) 85 ENSMUSG00000039763.10 ENSMUSG00000039763 ENSMUST00000133731 Dnajc28 protein_coding Interval_164618 chr9 40117141 40117896 + 0 NA Intergenic Intergenic -3312 ENSMUSG00000045812.5 ENSMUSG00000045812 ENSMUST00000056795 Olfr984 protein_coding Interval_90118 chr2 28251601 28252228 + 0 NA Intergenic Intergenic 58922 ENSMUSG00000026833.18 ENSMUSG00000026833 ENSMUST00000028177 Olfm1 protein_coding Interval_107441 chr3 107716202 107716492 + 0 NA Intergenic Intergenic -20384 ENSMUSG00000027893.14 ENSMUSG00000027893 ENSMUST00000138116 Ahcyl1 protein_coding Interval_85489 chr19 27416385 27417563 + 0 NA intron (ENSMUSG00000041360.8, intron 10 of 17) protein_coding-intron (ENSMUSG00000041360.8, intron 10 of 17) 3125 ENSMUSG00000041360.8 ENSMUSG00000041360 ENSMUST00000236702 Pum3 protein_coding Interval_141712 chr6 133960915 133961118 + 0 NA Intergenic Intergenic -28607 ENSMUSG00000107771.1 ENSMUSG00000107771 ENSMUST00000203939 Gm8956 processed_pseudogene Interval_99921 chr2 165825581 165826156 + 0 NA intron (ENSMUSG00000039671.18, intron 11 of 22) protein_coding-intron (ENSMUSG00000039671.18, intron 12 of 23) -31816 ENSMUSG00000085274.1 ENSMUSG00000085274 ENSMUST00000155786 BC046401 processed_transcript Interval_91998 chr2 52406455 52406665 + 0 NA intron (ENSMUSG00000036093.7, intron 1 of 2) protein_coding-intron (ENSMUSG00000036093.7, intron 4 of 5) 5755 ENSMUSG00000036093.7 ENSMUSG00000036093 ENSMUST00000130357 Arl5a protein_coding Interval_40472 chr12 105070621 105071188 + 0 NA Intergenic Intergenic 38216 ENSMUSG00000021102.4 ENSMUSG00000021102 ENSMUST00000220494 Glrx5 protein_coding Interval_36265 chr12 40463989 40464781 + 0 NA intron (ENSMUSG00000035954.10, intron 1 of 5) protein_coding-intron (ENSMUSG00000035954.10, intron 1 of 52) 18302 ENSMUSG00000035954.10 ENSMUSG00000035954 ENSMUST00000220850 Dock4 protein_coding Interval_134538 chr6 29411419 29411724 + 0 NA promoter-TSS (ENSMUSG00000029769.16) protein_coding-promoter-TSS (ENSMUSG00000029769.16) 1466 ENSMUSG00000029769.16 ENSMUSG00000029769 ENSMUST00000143599 Ccdc136 protein_coding Interval_10641 chr1 172398043 172398232 + 0 NA Intergenic Intergenic -7148 ENSMUSG00000102278.1 ENSMUSG00000102278 ENSMUST00000193540 Gm37145 TEC Interval_165717 chr9 51570875 51571281 + 0 NA Intergenic Intergenic -51667 ENSMUSG00000111162.1 ENSMUSG00000111162 ENSMUST00000216682 Gm7293 processed_pseudogene Interval_152072 chr7 128779081 128779714 + 0 NA intron (ENSMUSG00000055319.8, intron 17 of 18) protein_coding-intron (ENSMUSG00000055319.8, intron 17 of 18) -4434 ENSMUSG00000077283.1 ENSMUSG00000077283 ENSMUST00000104095 n-R5s158 rRNA Interval_71770 chr17 25972513 25973264 + 0 NA intron (ENSMUSG00000037326.10, intron 1 of 10) protein_coding-intron (ENSMUSG00000037326.10, intron 1 of 11) 12792 ENSMUSG00000037326.10 ENSMUSG00000037326 ENSMUST00000212702 Capn15 protein_coding Interval_166274 chr9 57960220 57961843 + 0 NA intron (ENSMUSG00000038264.8, intron 13 of 13) protein_coding-intron (ENSMUSG00000038264.8, intron 13 of 13) 20919 ENSMUSG00000038264.8 ENSMUSG00000038264 ENSMUST00000043059 Sema7a protein_coding Interval_135600 chr6 41192188 41192646 + 0 NA Intergenic Intergenic 4144 ENSMUSG00000076476.1 ENSMUSG00000076476 ENSMUST00000103277 Trbv20 TR_V_gene Interval_137391 chr6 71868979 71869489 + 0 NA promoter-TSS (ENSMUSG00000052337.15) protein_coding-promoter-TSS (ENSMUSG00000052337.15) 771 ENSMUSG00000108681.1 ENSMUSG00000108681 ENSMUST00000206836 Gm17825 processed_pseudogene Interval_150347 chr7 109780943 109782204 + 0 NA promoter-TSS (ENSMUSG00000034825.14) protein_coding-promoter-TSS (ENSMUSG00000034825.14) -30 ENSMUSG00000034825.14 ENSMUSG00000034825 ENSMUST00000207400 Nrip3 protein_coding Interval_161347 chr8 119886817 119887542 + 0 NA Intergenic Intergenic -23662 ENSMUSG00000092329.1 ENSMUSG00000092329 ENSMUST00000127664 Galnt2l protein_coding Interval_59137 chr15 44643195 44643553 + 0 NA Intergenic Intergenic 23945 ENSMUSG00000022339.9 ENSMUSG00000022339 ENSMUST00000022964 Ebag9 protein_coding Interval_76030 chr17 74475530 74476516 + 0 NA Intergenic Intergenic -15821 ENSMUSG00000024072.9 ENSMUSG00000024072 ENSMUST00000234853 Yipf4 protein_coding Interval_16697 chr10 67079104 67079650 + 0 NA intron (ENSMUSG00000019873.8, intron 1 of 8) protein_coding-intron (ENSMUSG00000019873.8, intron 1 of 7) -42055 ENSMUSG00000019873.8 ENSMUSG00000019873 ENSMUST00000219431 Reep3 protein_coding Interval_108834 chr3 132180943 132181227 + 0 NA TTS (ENSMUSG00000028031.6) protein_coding-TTS (ENSMUSG00000028031.6) 95793 ENSMUSG00000028031.6 ENSMUSG00000028031 ENSMUST00000029665 Dkk2 protein_coding Interval_109823 chr3 148342971 148344272 + 0 NA Intergenic Intergenic 10597 ENSMUSG00000077441.1 ENSMUSG00000077441 ENSMUST00000104253 Gm23131 snoRNA Interval_157757 chr8 72780291 72781147 + 0 NA intron (ENSMUSG00000110585.1, intron 1 of 3) unprocessed_pseudogene-intron (ENSMUSG00000110585.1, intron 1 of 3) 3614 ENSMUSG00000110585.1 ENSMUSG00000110585 ENSMUST00000212582 Gm45704 unprocessed_pseudogene Interval_120130 chr4 142772737 142773822 + 0 NA intron (ENSMUSG00000110067.2, intron 2 of 2) protein_coding-intron (ENSMUSG00000110067.2, intron 2 of 2) -17529 ENSMUSG00000103678.1 ENSMUSG00000103678 ENSMUST00000193751 Gm37624 TEC Interval_134301 chr6 24673341 24673936 + 0 NA Intergenic Intergenic -13269 ENSMUSG00000106946.1 ENSMUSG00000106946 ENSMUST00000200848 Gm42856 TEC Interval_160854 chr8 113848119 113849140 + 0 NA promoter-TSS (ENSMUSG00000053399.9) protein_coding-promoter-TSS (ENSMUSG00000053399.9) -3325 ENSMUSG00000053399.9 ENSMUSG00000053399 ENSMUST00000212527 Adamts18 protein_coding Interval_154296 chr8 14095374 14097430 + 0 NA intron (ENSMUSG00000047495.15, intron 1 of 14) protein_coding-intron (ENSMUSG00000047495.15, intron 1 of 15) 537 ENSMUSG00000047495.15 ENSMUSG00000047495 ENSMUST00000129119 Dlgap2 protein_coding Interval_90154 chr2 28596975 28599020 + 0 NA Intergenic Intergenic 2870 ENSMUSG00000089055.1 ENSMUSG00000089055 ENSMUST00000158430 Gm22675 snRNA Interval_67928 chr16 59606934 59607669 + 0 NA Intergenic Intergenic 31828 ENSMUSG00000022722.18 ENSMUSG00000022722 ENSMUST00000149797 Arl6 protein_coding Interval_106099 chr3 93050142 93050398 + 0 NA Intergenic Intergenic 14694 ENSMUSG00000104298.1 ENSMUSG00000104298 ENSMUST00000193505 Gm38040 unprocessed_pseudogene Interval_157261 chr8 68782736 68783072 + 0 NA Intergenic Intergenic -15963 ENSMUSG00000081745.1 ENSMUSG00000081745 ENSMUST00000121595 Gm15549 processed_pseudogene Interval_43078 chr13 23697553 23698860 + 0 NA exon (ENSMUSG00000060678.5, exon 1 of 1) protein_coding-exon (ENSMUSG00000060678.5, exon 1 of 1) 248 ENSMUSG00000060678.5 ENSMUSG00000060678 ENSMUST00000102967 H4c3 protein_coding Interval_39884 chr12 99358469 99359112 + 0 NA intron (ENSMUSG00000033731.9, intron 2 of 3) protein_coding-intron (ENSMUSG00000033713.12, intron 2 of 5) 3238 ENSMUSG00000113106.1 ENSMUSG00000113106 ENSMUST00000221888 Gm47139 TEC Interval_19901 chr10 111094492 111094855 + 0 NA Intergenic Intergenic 8198 ENSMUSG00000112165.1 ENSMUSG00000112165 ENSMUST00000218334 Gm48851 processed_pseudogene Interval_88010 chr19 57867532 57867963 + 0 NA intron (ENSMUSG00000054843.9, intron 26 of 28) protein_coding-intron (ENSMUSG00000054843.9, intron 26 of 28) -183420 ENSMUSG00000093757.1 ENSMUSG00000093757 ENSMUST00000176631 Mir5623 miRNA Interval_128874 chr5 115804834 115805197 + 0 NA Intergenic Intergenic -2856 ENSMUSG00000083833.4 ENSMUSG00000083833 ENSMUST00000118829 Gm13841 processed_pseudogene Interval_24408 chr11 33057979 33058415 + 0 NA Intergenic Intergenic -10354 ENSMUSG00000087318.1 ENSMUSG00000087318 ENSMUST00000147896 Gm12114 lincRNA Interval_159483 chr8 95000750 95002491 + 0 NA intron (ENSMUSG00000031785.16, intron 1 of 3) protein_coding-intron (ENSMUSG00000031785.16, intron 1 of 13) 7142 ENSMUSG00000031785.16 ENSMUSG00000031785 ENSMUST00000211911 Adgrg1 protein_coding Interval_35620 chr12 25864619 25864795 + 0 NA Intergenic Intergenic -6446 ENSMUSG00000113827.1 ENSMUSG00000113827 ENSMUST00000221959 Gm47733 lincRNA Interval_88353 chr2 4298819 4299078 + 0 NA intron (ENSMUSG00000087355.7, intron 2 of 4) protein_coding-intron (ENSMUSG00000026657.17, intron 1 of 22) 2219 ENSMUSG00000087355.7 ENSMUSG00000087355 ENSMUST00000156609 Gm13187 processed_transcript Interval_52302 chr14 44247448 44249016 + 0 NA intron (ENSMUSG00000115536.1, intron 2 of 3) lincRNA-intron (ENSMUSG00000115536.1, intron 1 of 1) -16812 ENSMUSG00000115160.1 ENSMUSG00000115160 ENSMUST00000226572 Gm6532 unprocessed_pseudogene Interval_69739 chr16 95955954 95956849 + 0 NA Intergenic Intergenic 34489 ENSMUSG00000022913.16 ENSMUSG00000022913 ENSMUST00000233134 Psmg1 protein_coding Interval_66862 chr16 38178328 38178576 + 0 NA intron (ENSMUSG00000022812.14, intron 3 of 5) protein_coding-intron (ENSMUSG00000022812.14, intron 3 of 10) 20444 ENSMUSG00000105863.1 ENSMUSG00000105863 ENSMUST00000198387 Gm25617 snoRNA Interval_9564 chr1 159446048 159446756 + 0 NA Intergenic Intergenic 17442 ENSMUSG00000103389.1 ENSMUSG00000103389 ENSMUST00000193072 Gm37757 processed_pseudogene Interval_141847 chr6 134897104 134898779 + 0 NA promoter-TSS (ENSMUSG00000032641.18) protein_coding-promoter-TSS (ENSMUSG00000032641.18) -20 ENSMUSG00000100876.1 ENSMUSG00000100876 ENSMUST00000189942 2810454H06Rik antisense Interval_50616 chr14 16604459 16604825 + 0 NA intron (ENSMUSG00000017491.9, intron 1 of 1) protein_coding-intron (ENSMUSG00000017491.9, intron 2 of 3) -28815 ENSMUSG00000017491.9 ENSMUSG00000017491 ENSMUST00000225245 Rarb protein_coding Interval_81413 chr18 60617720 60617971 + 0 NA intron (ENSMUSG00000043079.17, intron 1 of 2) protein_coding-intron (ENSMUSG00000043079.17, intron 1 of 2) 6417 ENSMUSG00000043079.17 ENSMUSG00000043079 ENSMUST00000139236 Synpo protein_coding Interval_102467 chr3 27063088 27065403 + 0 NA Intergenic Intergenic -16292 ENSMUSG00000102908.1 ENSMUSG00000102908 ENSMUST00000193221 Gm7558 processed_pseudogene Interval_58092 chr15 27817753 27818481 + 0 NA exon (ENSMUSG00000022263.10, exon 33 of 57) protein_coding-exon (ENSMUSG00000022263.10, exon 33 of 57) -38190 ENSMUSG00000115641.1 ENSMUSG00000115641 ENSMUST00000228765 Gm9891 TEC Interval_66930 chr16 38584791 38585660 + 0 NA promoter-TSS (ENSMUSG00000002845.14) protein_coding-promoter-TSS (ENSMUSG00000002845.14) -11925 ENSMUSG00000091238.1 ENSMUSG00000091238 ENSMUST00000168897 Gm17103 antisense Interval_101922 chr3 11553326 11553827 + 0 NA Intergenic Intergenic 105934 ENSMUSG00000098085.1 ENSMUSG00000098085 ENSMUST00000182028 Gm8919 processed_pseudogene Interval_92037 chr2 52785113 52785361 + 0 NA Intergenic Intergenic -43047 ENSMUSG00000055371.17 ENSMUSG00000055371 ENSMUST00000138290 Stam2 protein_coding Interval_129759 chr5 122157778 122158850 + 0 NA promoter-TSS (ENSMUSG00000004455.16) protein_coding-promoter-TSS (ENSMUSG00000004455.16) -279 ENSMUSG00000004455.16 ENSMUSG00000004455 ENSMUST00000134719 Ppp1cc protein_coding Interval_147376 chr7 66263707 66265009 + 0 NA intron (ENSMUSG00000015133.17, intron 11 of 14) protein_coding-intron (ENSMUSG00000015133.17, intron 31 of 33) -1888 ENSMUSG00000015133.17 ENSMUSG00000015133 ENSMUST00000154893 Lrrk1 protein_coding Interval_94487 chr2 91603682 91603946 + 0 NA intron (ENSMUSG00000040549.16, intron 34 of 41) protein_coding-intron (ENSMUSG00000040549.16, intron 34 of 42) 7744 ENSMUSG00000077221.1 ENSMUSG00000077221 ENSMUST00000104033 Snord67 snoRNA Interval_63523 chr15 101720116 101720325 + 0 NA Intergenic Intergenic -7322 ENSMUSG00000061527.7 ENSMUSG00000061527 ENSMUST00000023709 Krt5 protein_coding Interval_62895 chr15 97776333 97776995 + 0 NA Intergenic Intergenic -1856 ENSMUSG00000081534.3 ENSMUSG00000081534 ENSMUST00000229084 Slc48a1 protein_coding Interval_21137 chr10 126820281 126821278 + 0 NA Intergenic Intergenic -10479 ENSMUSG00000112492.1 ENSMUSG00000112492 ENSMUST00000219394 Gm9111 processed_pseudogene Interval_83447 chr18 85620864 85621782 + 0 NA Intergenic Intergenic 95402 ENSMUSG00000117854.1 ENSMUSG00000117854 ENSMUST00000237113 Gm7612 processed_pseudogene Interval_29490 chr11 84413360 84414624 + 0 NA Intergenic Intergenic 99530 ENSMUSG00000018697.14 ENSMUSG00000018697 ENSMUST00000148434 Aatf protein_coding Interval_111985 chr4 32994300 32996494 + 0 NA intron (ENSMUSG00000028278.14, intron 2 of 7) protein_coding-intron (ENSMUSG00000028278.14, intron 2 of 7) 6924 ENSMUSG00000081025.1 ENSMUSG00000081025 ENSMUST00000119473 Gm11943 processed_pseudogene Interval_145487 chr7 35156184 35157008 + 0 NA Intergenic Intergenic -15147 ENSMUSG00000108575.1 ENSMUSG00000108575 ENSMUST00000206742 Gm35665 lincRNA Interval_39562 chr12 90728422 90730105 + 0 NA exon (ENSMUSG00000007682.6, exon 2 of 2) protein_coding-exon (ENSMUSG00000007682.6, exon 2 of 2) -8956 ENSMUSG00000097157.2 ENSMUSG00000097157 ENSMUST00000220857 Gm26512 bidirectional_promoter_lncRNA Interval_165453 chr9 48252172 48252836 + 0 NA intron (ENSMUSG00000044229.9, intron 2 of 8) protein_coding-intron (ENSMUSG00000044229.9, intron 1 of 10) 88350 ENSMUSG00000032028.15 ENSMUSG00000032028 ENSMUST00000142667 Nxpe2 protein_coding Interval_131727 chr5 139523153 139523931 + 0 NA promoter-TSS (ENSMUSG00000106056.1) lincRNA-promoter-TSS (ENSMUSG00000106056.1) -207 ENSMUSG00000106056.1 ENSMUSG00000106056 ENSMUST00000198000 4930500L23Rik lincRNA Interval_128198 chr5 111649193 111649615 + 0 NA Intergenic Intergenic 55788 ENSMUSG00000104833.1 ENSMUSG00000104833 ENSMUST00000198964 Gm42489 lincRNA Interval_157042 chr8 64733156 64733946 + 0 NA promoter-TSS (ENSMUSG00000031604.10) protein_coding-promoter-TSS (ENSMUSG00000031604.10) -2492 ENSMUSG00000031604.10 ENSMUSG00000031604 ENSMUST00000141021 Msmo1 protein_coding Interval_15829 chr10 57743087 57744359 + 0 NA Intergenic Intergenic -38631 ENSMUSG00000093552.1 ENSMUSG00000093552 ENSMUST00000177265 Gm5777 processed_pseudogene Interval_16962 chr10 70163624 70164049 + 0 NA intron (ENSMUSG00000048701.13, intron 3 of 8) protein_coding-intron (ENSMUSG00000048701.13, intron 3 of 8) -11175 ENSMUSG00000048701.13 ENSMUSG00000048701 ENSMUST00000135607 Ccdc6 protein_coding Interval_67393 chr16 48296444 48296789 + 0 NA Intergenic Intergenic -7292 ENSMUSG00000072419.5 ENSMUSG00000072419 ENSMUST00000097175 Dppa2 protein_coding Interval_156240 chr8 46445907 46446807 + 0 NA Intergenic Intergenic 5947 ENSMUSG00000109912.1 ENSMUSG00000109912 ENSMUST00000210082 Gm45245 processed_pseudogene Interval_80756 chr18 46860162 46860370 + 0 NA intron (ENSMUSG00000024481.5, intron 1 of 8) protein_coding-intron (ENSMUSG00000024481.5, intron 1 of 19) 10227 ENSMUSG00000024481.5 ENSMUSG00000024481 ENSMUST00000234519 Lvrn protein_coding Interval_91018 chr2 34387167 34387989 + 0 NA Intergenic Intergenic -19294 ENSMUSG00000038696.14 ENSMUSG00000038696 ENSMUST00000129633 Mapkap1 protein_coding Interval_119245 chr4 136431085 136431740 + 0 NA intron (ENSMUSG00000070687.11, intron 1 of 1) protein_coding-intron (ENSMUSG00000070687.11, intron 1 of 1) 6800 ENSMUSG00000070687.11 ENSMUSG00000070687 ENSMUST00000133818 Htr1d protein_coding Interval_26047 chr11 53745499 53745678 + 0 NA Intergenic Intergenic 12009 ENSMUSG00000083986.1 ENSMUSG00000083986 ENSMUST00000119924 Gm12213 processed_pseudogene Interval_135781 chr6 47294011 47295027 + 0 NA intron (ENSMUSG00000039419.17, intron 2 of 3) protein_coding-intron (ENSMUSG00000039419.17, intron 2 of 3) 138570 ENSMUSG00000107853.1 ENSMUSG00000107853 ENSMUST00000203098 Gm18584 processed_pseudogene Interval_159660 chr8 96238060 96239425 + 0 NA Intergenic Intergenic -70777 ENSMUSG00000110623.1 ENSMUSG00000110623 ENSMUST00000212446 Gm32005 lincRNA Interval_136568 chr6 55777530 55777903 + 0 NA Intergenic Intergenic 93145 ENSMUSG00000108063.1 ENSMUSG00000108063 ENSMUST00000203099 Gm3279 lincRNA Interval_21615 chr11 3250449 3250883 + 0 NA intron (ENSMUSG00000020457.13, intron 2 of 2) protein_coding-intron (ENSMUSG00000020457.13, intron 8 of 8) 15726 ENSMUSG00000020457.13 ENSMUSG00000020457 ENSMUST00000132159 Drg1 protein_coding Interval_25034 chr11 43417039 43417672 + 0 NA Intergenic Intergenic 8626 ENSMUSG00000020415.16 ENSMUSG00000020415 ENSMUST00000148130 Pttg1 protein_coding Interval_13329 chr10 15160605 15160814 + 0 NA Intergenic Intergenic 24806 ENSMUSG00000112475.1 ENSMUSG00000112475 ENSMUST00000218676 Gm47703 processed_pseudogene Interval_24712 chr11 36069914 36070143 + 0 NA intron (ENSMUSG00000049336.16, intron 15 of 28) protein_coding-intron (ENSMUSG00000049336.16, intron 15 of 28) -10636 ENSMUSG00000087245.1 ENSMUSG00000087245 ENSMUST00000147717 Gm12126 antisense Interval_159045 chr8 89041047 89041424 + 0 NA intron (ENSMUSG00000031665.7, intron 2 of 3) protein_coding-intron (ENSMUSG00000031665.7, intron 2 of 3) 2927 ENSMUSG00000031665.7 ENSMUSG00000031665 ENSMUST00000034090 Sall1 protein_coding Interval_75314 chr17 65842647 65843079 + 0 NA TTS (ENSMUSG00000061950.17) protein_coding-TTS (ENSMUSG00000061950.17) 13915 ENSMUSG00000061950.17 ENSMUSG00000061950 ENSMUST00000162703 Ppp4r1 protein_coding Interval_70036 chr17 4873856 4874145 + 0 NA intron (ENSMUSG00000116813.1, intron 2 of 2) lincRNA-intron (ENSMUSG00000116813.1, intron 2 of 2) -6626 ENSMUSG00000116620.1 ENSMUSG00000116620 ENSMUST00000231980 Gm4828 processed_pseudogene Interval_102787 chr3 31019454 31019819 + 0 NA intron (ENSMUSG00000037643.14, intron 2 of 7) protein_coding-intron (ENSMUSG00000037643.14, intron 2 of 17) -18814 ENSMUSG00000037643.14 ENSMUSG00000037643 ENSMUST00000130706 Prkci protein_coding Interval_54107 chr14 65368778 65369254 + 0 NA intron (ENSMUSG00000034522.10, intron 1 of 2) protein_coding-intron (ENSMUSG00000034522.10, intron 1 of 9) -9606 ENSMUSG00000114357.1 ENSMUSG00000114357 ENSMUST00000225691 Gm48449 antisense Interval_128853 chr5 115609906 115611710 + 0 NA TTS (ENSMUSG00000041638.18) protein_coding-TTS (ENSMUSG00000041638.18) 21008 ENSMUSG00000107121.1 ENSMUSG00000107121 ENSMUST00000201728 1110006O24Rik lincRNA Interval_98486 chr2 152734567 152737086 + 0 NA promoter-TSS (ENSMUSG00000042745.9) protein_coding-promoter-TSS (ENSMUSG00000042745.9) -425 ENSMUSG00000042745.9 ENSMUSG00000042745 ENSMUST00000109824 Id1 protein_coding Interval_22674 chr11 12818678 12819375 + 0 NA Intergenic Intergenic 118912 ENSMUSG00000083859.1 ENSMUSG00000083859 ENSMUST00000118518 Gm12003 processed_pseudogene Interval_45255 chr13 53560951 53561158 + 0 NA Intergenic Intergenic -27797 ENSMUSG00000113834.1 ENSMUSG00000113834 ENSMUST00000223156 Gm34022 lincRNA Interval_68148 chr16 65723955 65724130 + 0 NA Intergenic Intergenic -69329 ENSMUSG00000116622.1 ENSMUSG00000116622 ENSMUST00000231905 Gm5221 processed_pseudogene Interval_154148 chr8 13060314 13061010 + 0 NA promoter-TSS (ENSMUSG00000031445.5) protein_coding-promoter-TSS (ENSMUSG00000031445.5) -281 ENSMUSG00000031445.5 ENSMUSG00000031445 ENSMUST00000033822 Proz protein_coding Interval_29225 chr11 81714328 81714554 + 0 NA intron (ENSMUSG00000020704.13, intron 1 of 9) protein_coding-intron (ENSMUSG00000020704.13, intron 1 of 9) 127080 ENSMUSG00000087534.1 ENSMUSG00000087534 ENSMUST00000156193 Gm11418 antisense Interval_21801 chr11 4450536 4451591 + 0 NA Intergenic Intergenic -23801 ENSMUSG00000020419.11 ENSMUSG00000020419 ENSMUST00000124249 Hormad2 protein_coding Interval_157222 chr8 68120847 68121727 + 0 NA promoter-TSS (ENSMUSG00000030465.19) protein_coding-promoter-TSS (ENSMUSG00000030465.19) 90740 ENSMUSG00000030465.19 ENSMUSG00000030465 ENSMUST00000178529 Psd3 protein_coding Interval_48975 chr13 106607340 106608749 + 0 NA Intergenic Intergenic -60984 ENSMUSG00000059877.3 ENSMUSG00000059877 ENSMUST00000076359 Dph3b-ps processed_pseudogene Interval_16927 chr10 69964747 69965291 + 0 NA intron (ENSMUSG00000069601.14, intron 29 of 42) protein_coding-intron (ENSMUSG00000069601.14, intron 4 of 16) -209992 ENSMUSG00000048701.13 ENSMUSG00000048701 ENSMUST00000135607 Ccdc6 protein_coding Interval_101406 chr2 181091015 181091846 + 0 NA intron (ENSMUSG00000016346.17, intron 10 of 14) protein_coding-intron (ENSMUSG00000016346.17, intron 10 of 16) 18326 ENSMUSG00000016346.17 ENSMUSG00000016346 ENSMUST00000140789 Kcnq2 protein_coding Interval_100214 chr2 167695596 167696248 + 0 NA exon (ENSMUSG00000006462.6, exon 2 of 2) lincRNA-exon (ENSMUSG00000006462.6, exon 2 of 2) 4745 ENSMUSG00000006462.6 ENSMUSG00000006462 ENSMUST00000130679 A530013C23Rik lincRNA Interval_116374 chr4 110587455 110587875 + 0 NA intron (ENSMUSG00000061298.14, intron 3 of 12) protein_coding-intron (ENSMUSG00000061298.14, intron 3 of 12) -73933 ENSMUSG00000082348.1 ENSMUSG00000082348 ENSMUST00000121546 Gm12807 processed_pseudogene Interval_61638 chr15 83085823 83086200 + 0 NA Intergenic Intergenic -14252 ENSMUSG00000058586.12 ENSMUSG00000058586 ENSMUST00000169461 Serhl protein_coding Interval_133581 chr6 7081443 7081635 + 0 NA Intergenic Intergenic 112633 ENSMUSG00000098421.1 ENSMUSG00000098421 ENSMUST00000184890 Gm27190 processed_pseudogene Interval_25520 chr11 49504927 49505186 + 0 NA Intergenic Intergenic -1668 ENSMUSG00000044170.5 ENSMUSG00000044170 ENSMUST00000060434 Olfr1384 protein_coding Interval_61813 chr15 84331906 84332312 + 0 NA intron (ENSMUSG00000022439.9, intron 6 of 12) protein_coding-intron (ENSMUSG00000022439.9, intron 6 of 12) 5990 ENSMUSG00000022439.9 ENSMUSG00000022439 ENSMUST00000163667 Parvg protein_coding Interval_159464 chr8 94875758 94877076 + 0 NA promoter-TSS (ENSMUSG00000040631.8) protein_coding-promoter-TSS (ENSMUSG00000040631.8) -5213 ENSMUSG00000040631.8 ENSMUSG00000040631 ENSMUST00000212745 Dok4 protein_coding Interval_135069 chr6 35161157 35161788 + 0 NA Intergenic Intergenic -16144 ENSMUSG00000038759.15 ENSMUSG00000038759 ENSMUST00000200739 Nup205 protein_coding Interval_165534 chr9 49096388 49096604 + 0 NA intron (ENSMUSG00000032268.13, intron 1 of 13) protein_coding-intron (ENSMUSG00000032268.13, intron 1 of 13) -6232 ENSMUSG00000032268.13 ENSMUSG00000032268 ENSMUST00000170426 Tmprss5 protein_coding Interval_173288 chrX 76511869 76512057 + 0 NA Intergenic Intergenic 27575 ENSMUSG00000081175.3 ENSMUSG00000081175 ENSMUST00000119393 Gm5793 unprocessed_pseudogene Interval_146010 chr7 43101239 43102518 + 0 NA Intergenic Intergenic 2159 ENSMUSG00000071952.3 ENSMUSG00000071952 ENSMUST00000087694 Gm10351 TEC Interval_49796 chr13 115504143 115504579 + 0 NA Intergenic Intergenic 25411 ENSMUSG00000114551.1 ENSMUSG00000114551 ENSMUST00000225901 Gm6035 processed_pseudogene Interval_111769 chr4 28298773 28299169 + 0 NA Intergenic Intergenic -54812 ENSMUSG00000082703.1 ENSMUSG00000082703 ENSMUST00000118918 Gm11907 processed_pseudogene Interval_57047 chr15 5107860 5109223 + 0 NA promoter-TSS (ENSMUSG00000041849.7) protein_coding-promoter-TSS (ENSMUSG00000041849.7) -57 ENSMUSG00000041849.7 ENSMUSG00000041849 ENSMUST00000141020 Card6 protein_coding Interval_125629 chr5 72887926 72888995 + 0 NA Intergenic Intergenic -26208 ENSMUSG00000036087.18 ENSMUSG00000036087 ENSMUST00000145939 Slain2 protein_coding Interval_49845 chr13 117048640 117048917 + 0 NA Intergenic Intergenic -1956 ENSMUSG00000114609.1 ENSMUSG00000114609 ENSMUST00000224367 Gm29767 processed_pseudogene Interval_126192 chr5 81934256 81934991 + 0 NA Intergenic Intergenic 107807 ENSMUSG00000106746.1 ENSMUSG00000106746 ENSMUST00000202166 2900064F13Rik TEC Interval_64389 chr16 11051388 11051631 + 0 NA intron (ENSMUSG00000022500.15, intron 1 of 2) protein_coding-intron (ENSMUSG00000022500.15, intron 1 of 2) 4605 ENSMUSG00000116274.1 ENSMUSG00000116274 ENSMUST00000229230 Gm18724 processed_pseudogene Interval_28860 chr11 78813988 78814644 + 0 NA Intergenic Intergenic -10071 ENSMUSG00000088748.1 ENSMUSG00000088748 ENSMUST00000158123 Gm23219 snRNA Interval_169737 chr9 100793685 100794137 + 0 NA intron (ENSMUSG00000037286.15, intron 5 of 5) protein_coding-intron (ENSMUSG00000037286.15, intron 7 of 32) -83180 ENSMUSG00000103624.1 ENSMUSG00000103624 ENSMUST00000193413 Gm3081 TEC Interval_47922 chr13 94394549 94395507 + 0 NA intron (ENSMUSG00000021686.6, intron 3 of 26) protein_coding-intron (ENSMUSG00000021686.6, intron 3 of 26) -36105 ENSMUSG00000042857.3 ENSMUSG00000042857 ENSMUST00000221110 Gm9776 bidirectional_promoter_lncRNA Interval_5880 chr1 92910524 92911450 + 0 NA promoter-TSS (ENSMUSG00000026269.14) protein_coding-promoter-TSS (ENSMUSG00000026269.14) 134 ENSMUSG00000026269.14 ENSMUSG00000026269 ENSMUST00000179531 Rnpepl1 protein_coding Interval_118766 chr4 133607256 133607533 + 0 NA exon (ENSMUSG00000037553.14, exon 8 of 8) protein_coding-exon (ENSMUSG00000037553.14, exon 8 of 8) -5226 ENSMUSG00000047281.3 ENSMUSG00000047281 ENSMUST00000057311 Sfn protein_coding Interval_56189 chr14 111606120 111606393 + 0 NA Intergenic Intergenic 62055 ENSMUSG00000115818.1 ENSMUSG00000115818 ENSMUST00000227161 Gm18580 processed_pseudogene Interval_103507 chr3 45426839 45427308 + 0 NA intron (ENSMUSG00000100799.2, intron 2 of 3) protein_coding-intron (ENSMUSG00000049100.15, intron 4 of 4) -11307 ENSMUSG00000103713.1 ENSMUSG00000103713 ENSMUST00000193945 Gm2136 TEC Interval_160058 chr8 106075374 106075641 + 0 NA intron (ENSMUSG00000031902.10, intron 1 of 3) protein_coding-intron (ENSMUSG00000031902.10, intron 1 of 9) -3633 ENSMUSG00000093345.2 ENSMUSG00000093345 ENSMUST00000175604 Gm27956 misc_RNA Interval_97775 chr2 143963317 143964114 + 0 NA intron (ENSMUSG00000027422.15, intron 2 of 3) protein_coding-intron (ENSMUSG00000027422.15, intron 8 of 23) -6070 ENSMUSG00000027422.15 ENSMUSG00000027422 ENSMUST00000037875 Rrbp1 protein_coding Interval_81599 chr18 61981228 61981789 + 0 NA intron (ENSMUSG00000045629.8, intron 1 of 9) protein_coding-intron (ENSMUSG00000045629.8, intron 8 of 16) 3549 ENSMUSG00000045629.8 ENSMUSG00000045629 ENSMUST00000236759 Sh3tc2 protein_coding Interval_58548 chr15 36001536 36001754 + 0 NA Intergenic Intergenic -27253 ENSMUSG00000088786.1 ENSMUSG00000088786 ENSMUST00000158161 Gm25372 misc_RNA Interval_163373 chr9 21137323 21137722 + 0 NA exon (ENSMUSG00000019471.10, exon 8 of 8) protein_coding-exon (ENSMUSG00000019471.10, exon 8 of 8) 5672 ENSMUSG00000019471.10 ENSMUSG00000019471 ENSMUST00000215866 Cdc37 protein_coding Interval_155243 chr8 28594362 28595641 + 0 NA TTS (ENSMUSG00000097776.1) lincRNA-TTS (ENSMUSG00000097776.1) 1469 ENSMUSG00000097776.1 ENSMUSG00000097776 ENSMUST00000181267 Gm26795 lincRNA Interval_165079 chr9 44435666 44436056 + 0 NA exon (ENSMUSG00000074397.5, exon 3 of 5) protein_coding-exon (ENSMUSG00000074397.5, exon 3 of 5) 5154 ENSMUSG00000074397.5 ENSMUSG00000074397 ENSMUST00000215980 Foxr1 protein_coding Interval_3337 chr1 57070164 57071225 + 0 NA Intergenic Intergenic -56646 ENSMUSG00000099945.1 ENSMUSG00000099945 ENSMUST00000185283 1700126A01Rik lincRNA Interval_66789 chr16 37650478 37651820 + 0 NA intron (ENSMUSG00000022820.4, intron 1 of 2) protein_coding-intron (ENSMUSG00000022820.4, intron 1 of 2) 3217 ENSMUSG00000022820.4 ENSMUSG00000022820 ENSMUST00000231881 Ndufb4 protein_coding Interval_87984 chr19 57576790 57577606 + 0 NA Intergenic Intergenic -7563 ENSMUSG00000117978.1 ENSMUSG00000117978 ENSMUST00000237779 Gm50286 processed_pseudogene Interval_118577 chr4 132596711 132596944 + 0 NA Intergenic Intergenic 32760 ENSMUSG00000056529.7 ENSMUSG00000056529 ENSMUST00000070690 Ptafr protein_coding Interval_60686 chr15 76157807 76159218 + 0 NA Intergenic Intergenic 8144 ENSMUSG00000116475.1 ENSMUSG00000116475 ENSMUST00000229700 Gm19945 processed_pseudogene Interval_109584 chr3 144689283 144689859 + 0 NA exon (ENSMUSG00000037062.13, exon 9 of 9) protein_coding-exon (ENSMUSG00000037062.13, exon 9 of 9) 17062 ENSMUSG00000037062.13 ENSMUSG00000037062 ENSMUST00000200532 Sh3glb1 protein_coding Interval_41226 chr12 111957987 111959580 + 0 NA Intergenic Intergenic 3925 ENSMUSG00000021290.6 ENSMUSG00000021290 ENSMUST00000222405 Atp5mpl protein_coding Interval_167496 chr9 70036477 70037350 + 0 NA exon (ENSMUSG00000032226.5, exon 2 of 3) protein_coding-exon (ENSMUSG00000032226.5, exon 2 of 3) 1175 ENSMUSG00000032226.5 ENSMUSG00000032226 ENSMUST00000034751 Gcnt3 protein_coding Interval_162806 chr9 9277770 9278695 + 0 NA Intergenic Intergenic -23159 ENSMUSG00000088076.1 ENSMUSG00000088076 ENSMUST00000157451 Gm22815 snRNA Interval_8991 chr1 152954831 152956645 + 0 NA intron (ENSMUSG00000042751.14, intron 1 of 4) protein_coding-intron (ENSMUSG00000042751.14, intron 1 of 10) -5641 ENSMUSG00000100702.1 ENSMUSG00000100702 ENSMUST00000187136 Gm8976 processed_pseudogene Interval_77799 chr18 3762953 3763148 + 0 NA Intergenic Intergenic 7754 ENSMUSG00000088480.1 ENSMUSG00000088480 ENSMUST00000157855 Gm23643 snRNA Interval_119578 chr4 138475313 138476992 + 0 NA Intergenic Intergenic 21838 ENSMUSG00000046447.3 ENSMUSG00000046447 ENSMUST00000050918 Camk2n1 protein_coding Interval_104805 chr3 73968583 73968811 + 0 NA Intergenic Intergenic 35651 ENSMUSG00000102859.1 ENSMUSG00000102859 ENSMUST00000194185 Gm8625 processed_pseudogene Interval_79607 chr18 33980261 33980538 + 0 NA intron (ENSMUSG00000024376.7, intron 2 of 2) protein_coding-intron (ENSMUSG00000024376.7, intron 2 of 23) 26567 ENSMUSG00000024376.7 ENSMUSG00000024376 ENSMUST00000237971 Epb41l4a protein_coding Interval_3867 chr1 63996051 63996248 + 0 NA Intergenic Intergenic 31422 ENSMUSG00000044689.5 ENSMUSG00000044689 ENSMUST00000133244 Gm13749 lincRNA Interval_156007 chr8 41909049 41909429 + 0 NA intron (ENSMUSG00000102046.1, intron 3 of 5) lincRNA-intron (ENSMUSG00000102046.1, intron 3 of 5) -14281 ENSMUSG00000108069.1 ENSMUSG00000108069 ENSMUST00000203513 Hspd1-ps1 processed_pseudogene Interval_38870 chr12 83520085 83520985 + 0 NA promoter-TSS (ENSMUSG00000021222.9) protein_coding-promoter-TSS (ENSMUSG00000021222.9) -5465 ENSMUSG00000021222.9 ENSMUSG00000021222 ENSMUST00000221944 Dcaf4 protein_coding Interval_90685 chr2 31884550 31885004 + 0 NA Intergenic Intergenic -2514 ENSMUSG00000026840.14 ENSMUSG00000026840 ENSMUST00000135995 Lamc3 protein_coding Interval_65283 chr16 21214570 21215192 + 0 NA TTS (ENSMUSG00000005958.15) protein_coding-TTS (ENSMUSG00000005958.15) 4357 ENSMUSG00000005958.15 ENSMUSG00000005958 ENSMUST00000160053 Ephb3 protein_coding Interval_38726 chr12 81630627 81632214 + 0 NA promoter-TSS (ENSMUSG00000042734.6) protein_coding-promoter-TSS (ENSMUSG00000042734.6) 171 ENSMUSG00000042734.6 ENSMUSG00000042734 ENSMUST00000036116 Ttc9 protein_coding Interval_90606 chr2 31425189 31425387 + 0 NA intron (ENSMUSG00000055632.18, intron 72 of 97) protein_coding-intron (ENSMUSG00000055632.18, intron 72 of 97) -75438 ENSMUSG00000076441.9 ENSMUSG00000076441 ENSMUST00000130195 Ass1 protein_coding Interval_21310 chr10 127881170 127881640 + 0 NA Intergenic Intergenic 6925 ENSMUSG00000040134.8 ENSMUSG00000040134 ENSMUST00000130374 Rdh7 protein_coding Interval_161956 chr8 124034303 124034815 + 0 NA intron (ENSMUSG00000031976.14, intron 4 of 9) protein_coding-intron (ENSMUSG00000031976.14, intron 3 of 8) 11918 ENSMUSG00000088414.1 ENSMUSG00000088414 ENSMUST00000157789 Mir1967 miRNA Interval_161201 chr8 118517150 118519072 + 0 NA intron (ENSMUSG00000031841.19, intron 2 of 7) protein_coding-intron (ENSMUSG00000031841.19, intron 2 of 13) -91512 ENSMUSG00000064801.1 ENSMUSG00000064801 ENSMUST00000082867 Gm24035 snRNA Interval_19320 chr10 96658875 96659516 + 0 NA Intergenic Intergenic 41641 ENSMUSG00000036478.8 ENSMUSG00000036478 ENSMUST00000218953 Btg1 protein_coding Interval_121441 chr4 155822628 155823530 + 0 NA intron (ENSMUSG00000029068.16, intron 10 of 10) protein_coding-intron (ENSMUSG00000029068.16, intron 10 of 10) -8540 ENSMUSG00000065990.12 ENSMUSG00000065990 ENSMUST00000105591 Aurkaip1 protein_coding Interval_100409 chr2 168872166 168872905 + 0 NA Intergenic Intergenic 9633 ENSMUSG00000077761.1 ENSMUSG00000077761 ENSMUST00000104573 Gm25214 snoRNA Interval_48337 chr13 98291544 98292084 + 0 NA intron (ENSMUSG00000096330.8, intron 2 of 5) protein_coding-intron (ENSMUSG00000096330.8, intron 3 of 3) -10690 ENSMUSG00000096330.8 ENSMUSG00000096330 ENSMUST00000186911 Gm21976 protein_coding Interval_103961 chr3 55542367 55542950 + 0 NA Intergenic Intergenic -5788 ENSMUSG00000064904.1 ENSMUSG00000064904 ENSMUST00000082970 Gm25404 snRNA Interval_68555 chr16 78617288 78618310 + 0 NA Intergenic Intergenic -6948 ENSMUSG00000093988.1 ENSMUSG00000093988 ENSMUST00000083459 Gm24861 snRNA Interval_82005 chr18 67087970 67089799 + 0 NA exon (ENSMUSG00000024524.17, exon 1 of 1) protein_coding-exon (ENSMUSG00000024524.17, exon 1 of 1) 586 ENSMUSG00000024524.17 ENSMUSG00000024524 ENSMUST00000236918 Gnal protein_coding Interval_152345 chr7 132153876 132155554 + 0 NA promoter-TSS (ENSMUSG00000030862.13) protein_coding-promoter-TSS (ENSMUSG00000030862.13) 544 ENSMUSG00000086814.1 ENSMUSG00000086814 ENSMUST00000152302 Gm15677 antisense Interval_76779 chr17 83997599 83998876 + 0 NA promoter-TSS (ENSMUSG00000117431.1) lincRNA-promoter-TSS (ENSMUSG00000117431.1) -10657 ENSMUSG00000117431.1 ENSMUSG00000117431 ENSMUST00000235072 8430430B14Rik lincRNA Interval_168913 chr9 88561455 88562759 + 0 NA intron (ENSMUSG00000032425.15, intron 3 of 4) protein_coding-intron (ENSMUSG00000032425.15, intron 4 of 4) 8871 ENSMUSG00000092805.2 ENSMUSG00000092805 ENSMUST00000175064 Gm26461 misc_RNA Interval_2220 chr1 37129766 37130690 + 0 NA intron (ENSMUSG00000050122.19, intron 14 of 26) protein_coding-intron (ENSMUSG00000050122.19, intron 13 of 24) 3036 ENSMUSG00000103603.1 ENSMUSG00000103603 ENSMUST00000195303 Gm37020 antisense Interval_106997 chr3 102714964 102715680 + 0 NA exon (ENSMUSG00000105570.1, exon 1 of 1) lincRNA-exon (ENSMUSG00000105570.1, exon 1 of 1) 1070 ENSMUSG00000105570.1 ENSMUSG00000105570 ENSMUST00000198349 Gm42682 lincRNA Interval_60310 chr15 72746887 72747339 + 0 NA intron (ENSMUSG00000047921.17, intron 17 of 21) protein_coding-intron (ENSMUSG00000047921.17, intron 17 of 21) 21709 ENSMUSG00000116314.1 ENSMUSG00000116314 ENSMUST00000229330 Gm49459 processed_pseudogene Interval_144532 chr7 25744095 25744290 + 0 NA exon (ENSMUSG00000040725.13, exon 1 of 1) protein_coding-exon (ENSMUSG00000040725.13, exon 1 of 1) 10565 ENSMUSG00000040725.13 ENSMUSG00000040725 ENSMUST00000206041 Hnrnpul1 protein_coding Interval_57528 chr15 12115747 12116302 + 0 NA Intergenic Intergenic -1827 ENSMUSG00000022201.16 ENSMUSG00000022201 ENSMUST00000140787 Zfr protein_coding Interval_121314 chr4 154933472 154933750 + 0 NA Intergenic Intergenic -5534 ENSMUSG00000042333.16 ENSMUSG00000042333 ENSMUST00000145296 Tnfrsf14 protein_coding Interval_84486 chr19 11799659 11801978 + 0 NA intron (ENSMUSG00000041488.16, intron 2 of 10) protein_coding-intron (ENSMUSG00000041488.16, intron 2 of 11) 18075 ENSMUSG00000041488.16 ENSMUSG00000041488 ENSMUST00000209304 Stx3 protein_coding Interval_92086 chr2 53110250 53110566 + 0 NA intron (ENSMUSG00000036053.17, intron 15 of 26) protein_coding-intron (ENSMUSG00000036053.17, intron 15 of 26) 80779 ENSMUSG00000061136.16 ENSMUSG00000061136 ENSMUST00000132031 Prpf40a protein_coding Interval_59936 chr15 62092207 62093991 + 0 NA intron (ENSMUSG00000097039.8, intron 1 of 6) lincRNA-intron (ENSMUSG00000097039.8, intron 1 of 8) 12854 ENSMUSG00000098308.1 ENSMUSG00000098308 ENSMUST00000185059 Gm27782 misc_RNA Interval_43743 chr13 35939590 35941919 + 0 NA Intergenic Intergenic -2921 ENSMUSG00000114910.1 ENSMUSG00000114910 ENSMUST00000226038 Gm48756 processed_pseudogene Interval_29402 chr11 83775276 83776765 + 0 NA intron (ENSMUSG00000000976.13, intron 2 of 4) protein_coding-intron (ENSMUSG00000000976.13, intron 15 of 19) 1596 ENSMUSG00000000976.13 ENSMUSG00000000976 ENSMUST00000136572 Heatr6 protein_coding Interval_86873 chr19 44531277 44532049 + 0 NA intron (ENSMUSG00000051984.13, intron 9 of 24) protein_coding-intron (ENSMUSG00000051984.13, intron 10 of 25) -11070 ENSMUSG00000051984.13 ENSMUSG00000051984 ENSMUST00000165758 Sec31b protein_coding Interval_107929 chr3 116924768 116925081 + 0 NA intron (ENSMUSG00000033377.14, intron 6 of 6) protein_coding-intron (ENSMUSG00000033377.14, intron 6 of 7) 19406 ENSMUSG00000106073.1 ENSMUSG00000106073 ENSMUST00000196227 Gm42892 TEC Interval_83631 chr19 3336022 3336208 + 0 NA intron (ENSMUSG00000024900.5, intron 1 of 4) protein_coding-intron (ENSMUSG00000024900.5, intron 1 of 18) -18534 ENSMUSG00000118213.1 ENSMUSG00000118213 ENSMUST00000237542 Gm50307 processed_pseudogene Interval_171539 chr9 119093083 119094110 + 0 NA promoter-TSS (ENSMUSG00000010660.3) protein_coding-promoter-TSS (ENSMUSG00000010660.3) -8882 ENSMUSG00000038060.15 ENSMUSG00000038060 ENSMUST00000148611 Dlec1 protein_coding Interval_27450 chr11 67886046 67886484 + 0 NA intron (ENSMUSG00000020905.11, intron 8 of 14) protein_coding-intron (ENSMUSG00000020905.11, intron 8 of 14) 34944 ENSMUSG00000020905.11 ENSMUSG00000020905 ENSMUST00000152120 Usp43 protein_coding Interval_166755 chr9 62448086 62448593 + 0 NA intron (ENSMUSG00000041729.15, intron 3 of 3) protein_coding-intron (ENSMUSG00000041729.15, intron 3 of 11) 809 ENSMUSG00000041729.15 ENSMUSG00000041729 ENSMUST00000123379 Coro2b protein_coding Interval_50111 chr14 8062028 8062568 + 0 NA Intergenic Intergenic -27780 ENSMUSG00000023156.4 ENSMUSG00000023156 ENSMUST00000180369 Rpp14 protein_coding Interval_87860 chr19 56636821 56637854 + 0 NA Intergenic Intergenic 27274 ENSMUSG00000117890.1 ENSMUSG00000117890 ENSMUST00000237615 Gm32441 lincRNA Interval_71299 chr17 22019664 22020451 + 0 NA intron (ENSMUSG00000053347.15, intron 5 of 5) protein_coding-intron (ENSMUSG00000053347.15, intron 5 of 5) -12458 ENSMUSG00000040775.6 ENSMUSG00000040775 ENSMUST00000075018 Gm9772 processed_pseudogene Interval_70937 chr17 16344138 16344350 + 0 NA Intergenic Intergenic -23144 ENSMUSG00000116614.1 ENSMUSG00000116614 ENSMUST00000231650 Gm46610 processed_pseudogene Interval_170501 chr9 108326951 108328064 + 0 NA intron (ENSMUSG00000007815.13, intron 2 of 5) protein_coding-intron (ENSMUSG00000007815.13, intron 2 of 5) -3739 ENSMUSG00000102554.1 ENSMUSG00000102554 ENSMUST00000191755 Gm37568 processed_pseudogene Interval_108602 chr3 129520221 129521589 + 0 NA Intergenic Intergenic -11450 ENSMUSG00000041220.10 ENSMUSG00000041220 ENSMUST00000198369 Elovl6 protein_coding Interval_169935 chr9 103070915 103071125 + 0 NA intron (ENSMUSG00000032548.14, intron 6 of 13) protein_coding-intron (ENSMUSG00000032548.14, intron 6 of 13) 14506 ENSMUSG00000110765.1 ENSMUSG00000110765 ENSMUST00000216778 Gm47468 antisense Interval_131549 chr5 138084973 138085655 + 0 NA intron (ENSMUSG00000029729.12, intron 1 of 3) protein_coding-intron (ENSMUSG00000029729.12, intron 1 of 5) 194 ENSMUSG00000029729.12 ENSMUSG00000029729 ENSMUST00000110962 Zkscan1 protein_coding Interval_9749 chr1 161746138 161746996 + 0 NA exon (ENSMUSG00000102399.1, exon 1 of 1) processed_pseudogene-exon (ENSMUSG00000102399.1, exon 1 of 1) 511 ENSMUSG00000102399.1 ENSMUSG00000102399 ENSMUST00000195878 Gm5049 processed_pseudogene Interval_111754 chr4 27449879 27450207 + 0 NA Intergenic Intergenic -93135 ENSMUSG00000084163.1 ENSMUSG00000084163 ENSMUST00000120412 Gm11901 processed_pseudogene Interval_61166 chr15 79619693 79620377 + 0 NA TTS (ENSMUSG00000042564.13) protein_coding-TTS (ENSMUSG00000042564.13) -25242 ENSMUSG00000093223.3 ENSMUSG00000093223 ENSMUST00000175482 Gm27903 miRNA Interval_49803 chr13 115842979 115843361 + 0 NA Intergenic Intergenic 72234 ENSMUSG00000114324.1 ENSMUSG00000114324 ENSMUST00000224201 Gm18135 processed_pseudogene Interval_72780 chr17 32125269 32125772 + 0 NA intron (ENSMUSG00000038146.8, intron 2 of 3) protein_coding-intron (ENSMUSG00000038146.8, intron 31 of 32) 8245 ENSMUSG00000038146.8 ENSMUSG00000038146 ENSMUST00000235816 Notch3 protein_coding Interval_96748 chr2 127714373 127715323 + 0 NA intron (ENSMUSG00000027377.2, intron 1 of 3) protein_coding-intron (ENSMUSG00000027377.2, intron 1 of 3) 15084 ENSMUSG00000027377.2 ENSMUSG00000027377 ENSMUST00000028856 Mall protein_coding Interval_4587 chr1 75277048 75278161 + 0 NA intron (ENSMUSG00000033061.15, intron 1 of 2) protein_coding-intron (ENSMUSG00000033061.15, intron 1 of 5) -3341 ENSMUSG00000033061.15 ENSMUSG00000033061 ENSMUST00000189203 Resp18 protein_coding Interval_119797 chr4 140047717 140048437 + 0 NA intron (ENSMUSG00000040972.8, intron 4 of 9) protein_coding-intron (ENSMUSG00000040972.8, intron 4 of 9) -80051 ENSMUSG00000078234.6 ENSMUSG00000078234 ENSMUST00000105031 Klhdc7a protein_coding Interval_65905 chr16 30145468 30145895 + 0 NA Intergenic Intergenic -3736 ENSMUSG00000084444.1 ENSMUSG00000084444 ENSMUST00000122495 n-R5s32 rRNA Interval_39170 chr12 85571246 85572767 + 0 NA Intergenic Intergenic 27185 ENSMUSG00000113165.1 ENSMUSG00000113165 ENSMUST00000223391 Gm47863 bidirectional_promoter_lncRNA Interval_2349 chr1 38291374 38292172 + 0 NA intron (ENSMUSG00000037138.18, intron 9 of 22) protein_coding-intron (ENSMUSG00000037138.18, intron 9 of 22) -16129 ENSMUSG00000085280.1 ENSMUSG00000085280 ENSMUST00000129696 Gm16151 antisense Interval_38780 chr12 82276558 82277132 + 0 NA intron (ENSMUSG00000042700.16, intron 3 of 23) protein_coding-intron (ENSMUSG00000042700.16, intron 2 of 22) 107369 ENSMUSG00000042700.16 ENSMUSG00000042700 ENSMUST00000221327 Sipa1l1 protein_coding Interval_86076 chr19 36368444 36368967 + 0 NA intron (ENSMUSG00000024805.16, intron 1 of 8) protein_coding-intron (ENSMUSG00000024805.16, intron 1 of 8) 7362 ENSMUSG00000114285.1 ENSMUSG00000114285 ENSMUST00000224612 Gm47773 processed_pseudogene Interval_22135 chr11 6546100 6547448 + 0 NA promoter-TSS (ENSMUSG00000000378.15) protein_coding-promoter-TSS (ENSMUSG00000000378.15) -539 ENSMUSG00000088688.1 ENSMUSG00000088688 ENSMUST00000158063 Gm24000 snoRNA Interval_74911 chr17 57233891 57234146 + 0 NA TTS (ENSMUSG00000005823.9) protein_coding-TTS (ENSMUSG00000005823.9) -11191 ENSMUSG00000024164.15 ENSMUSG00000024164 ENSMUST00000176457 C3 protein_coding Interval_134503 chr6 29193665 29194552 + 0 NA Intergenic Intergenic -14524 ENSMUSG00000079654.3 ENSMUSG00000079654 ENSMUST00000159200 Prrt4 protein_coding Interval_133903 chr6 14689367 14689554 + 0 NA Intergenic Intergenic 65814 ENSMUSG00000042717.5 ENSMUSG00000042717 ENSMUST00000045096 Ppp1r3a protein_coding Interval_3652 chr1 60426524 60426846 + 0 NA intron (ENSMUSG00000026782.15, intron 1 of 4) protein_coding-intron (ENSMUSG00000026782.15, intron 1 of 8) 16904 ENSMUSG00000026782.15 ENSMUSG00000026782 ENSMUST00000190158 Abi2 protein_coding Interval_33606 chr11 117466470 117467586 + 0 NA Intergenic Intergenic 15569 ENSMUSG00000110653.1 ENSMUSG00000110653 ENSMUST00000212879 Gm34418 lincRNA Interval_152506 chr7 133659294 133659798 + 0 NA intron (ENSMUSG00000039990.16, intron 2 of 8) protein_coding-intron (ENSMUSG00000039990.16, intron 18 of 24) 2889 ENSMUSG00000039990.16 ENSMUSG00000039990 ENSMUST00000137338 Edrf1 protein_coding Interval_139695 chr6 107229772 107230507 + 0 NA intron (ENSMUSG00000107714.1, intron 1 of 3) lincRNA-intron (ENSMUSG00000107714.1, intron 1 of 3) 46599 ENSMUSG00000107714.1 ENSMUSG00000107714 ENSMUST00000203245 Gm34933 lincRNA Interval_154067 chr8 12445319 12446800 + 0 NA Intergenic Intergenic 20905 ENSMUSG00000109921.1 ENSMUSG00000109921 ENSMUST00000209741 Gm33326 lincRNA Interval_110133 chr3 153620823 153621067 + 0 NA promoter-TSS (ENSMUSG00000089376.1) misc_RNA-promoter-TSS (ENSMUSG00000089376.1) -757 ENSMUSG00000089376.1 ENSMUSG00000089376 ENSMUST00000158751 Gm22136 misc_RNA Interval_142940 chr6 147114370 147115535 + 0 NA Intergenic Intergenic 9638 ENSMUSG00000040102.10 ENSMUSG00000040102 ENSMUST00000203441 Klhl42 protein_coding Interval_46261 chr13 63101873 63102130 + 0 NA intron (ENSMUSG00000021458.17, intron 1 of 7) protein_coding-intron (ENSMUSG00000021458.17, intron 4 of 15) -32050 ENSMUSG00000113257.1 ENSMUSG00000113257 ENSMUST00000223302 Gm30409 sense_intronic Interval_81956 chr18 66403112 66405474 + 0 NA Intergenic Intergenic 2617 ENSMUSG00000118228.1 ENSMUSG00000118228 ENSMUST00000236577 Gm50153 TEC Interval_104270 chr3 62455745 62455913 + 0 NA intron (ENSMUSG00000036885.14, intron 6 of 7) protein_coding-intron (ENSMUSG00000036885.14, intron 11 of 13) 28649 ENSMUSG00000036885.14 ENSMUSG00000036885 ENSMUST00000192138 Arhgef26 protein_coding Interval_67955 chr16 60730236 60731408 + 0 NA Intergenic Intergenic -31531 ENSMUSG00000098819.1 ENSMUSG00000098819 ENSMUST00000184926 Gm27784 miRNA Interval_155915 chr8 41016352 41017059 + 0 NA promoter-TSS (ENSMUSG00000045636.16) protein_coding-promoter-TSS (ENSMUSG00000045636.16) 50 ENSMUSG00000045636.16 ENSMUSG00000045636 ENSMUST00000155055 Mtus1 protein_coding Interval_170909 chr9 111939489 111940348 + 0 NA Intergenic Intergenic -21252 ENSMUSG00000111054.1 ENSMUSG00000111054 ENSMUST00000215688 4930545L08Rik lincRNA Interval_64509 chr16 12900919 12901170 + 0 NA intron (ENSMUSG00000116520.1, intron 1 of 11) lincRNA-intron (ENSMUSG00000116520.1, intron 1 of 11) 44891 ENSMUSG00000116520.1 ENSMUSG00000116520 ENSMUST00000230696 4930414F18Rik lincRNA Interval_149399 chr7 98141314 98142197 + 0 NA intron (ENSMUSG00000035547.14, intron 3 of 12) protein_coding-intron (ENSMUSG00000035547.14, intron 3 of 12) 3747 ENSMUSG00000074006.3 ENSMUSG00000074006 ENSMUST00000098281 Omp protein_coding Interval_15989 chr10 59957498 59958768 + 0 NA Intergenic Intergenic -6299 ENSMUSG00000020108.4 ENSMUSG00000020108 ENSMUST00000020308 Ddit4 protein_coding Interval_32850 chr11 111967659 111967957 + 0 NA Intergenic Intergenic 75770 ENSMUSG00000081088.1 ENSMUSG00000081088 ENSMUST00000121830 Gm11679 processed_pseudogene Interval_44015 chr13 39537330 39538411 + 0 NA Intergenic Intergenic -4767 ENSMUSG00000114221.1 ENSMUSG00000114221 ENSMUST00000224895 Gm47351 lincRNA Interval_52331 chr14 45166866 45167983 + 0 NA TTS (ENSMUSG00000021830.14) protein_coding-TTS (ENSMUSG00000021830.14) 15687 ENSMUSG00000021830.14 ENSMUSG00000021830 ENSMUST00000123118 Txndc16 protein_coding Interval_71819 chr17 26285753 26287553 + 0 NA exon (ENSMUSG00000084893.3, exon 2 of 3) unprocessed_pseudogene-exon (ENSMUSG00000084893.3, exon 2 of 3) 408 ENSMUSG00000084893.3 ENSMUSG00000084893 ENSMUST00000128900 Hba-ps4 unprocessed_pseudogene Interval_79518 chr18 32671952 32672172 + 0 NA Intergenic Intergenic -50006 ENSMUSG00000087715.1 ENSMUSG00000087715 ENSMUST00000157090 Gm25826 snoRNA Interval_99107 chr2 157254169 157254405 + 0 NA intron (ENSMUSG00000074627.11, intron 3 of 3) protein_coding-intron (ENSMUSG00000074627.11, intron 7 of 24) 25262 ENSMUSG00000074627.11 ENSMUSG00000074627 ENSMUST00000150035 Mroh8 protein_coding Interval_67417 chr16 48486981 48487819 + 0 NA intron (ENSMUSG00000022652.7, intron 2 of 8) protein_coding-intron (ENSMUSG00000022652.7, intron 9 of 26) 7768 ENSMUSG00000022652.7 ENSMUSG00000022652 ENSMUST00000232195 Morc1 protein_coding Interval_149711 chr7 100848314 100849186 + 0 NA intron (ENSMUSG00000008318.10, intron 7 of 10) protein_coding-intron (ENSMUSG00000008318.10, intron 7 of 10) 6679 ENSMUSG00000008318.10 ENSMUSG00000008318 ENSMUST00000142885 Relt protein_coding Interval_20825 chr10 121330997 121331297 + 0 NA intron (ENSMUSG00000052302.6, intron 2 of 5) protein_coding-intron (ENSMUSG00000052302.6, intron 2 of 5) -12029 ENSMUSG00000111940.1 ENSMUSG00000111940 ENSMUST00000218322 Gm4478 processed_pseudogene Interval_84763 chr19 16359057 16359318 + 0 NA intron (ENSMUSG00000024639.5, intron 5 of 6) protein_coding-intron (ENSMUSG00000024639.5, intron 5 of 6) -44183 ENSMUSG00000098718.1 ENSMUSG00000098718 ENSMUST00000184935 Mir496b miRNA Interval_16321 chr10 62194274 62195814 + 0 NA promoter-TSS (ENSMUSG00000099185.1) miRNA-promoter-TSS (ENSMUSG00000099185.1) -817 ENSMUSG00000099185.1 ENSMUSG00000099185 ENSMUST00000184761 Mir7662 miRNA Interval_123898 chr5 36373154 36374292 + 0 NA intron (ENSMUSG00000029093.14, intron 1 of 7) protein_coding-intron (ENSMUSG00000029093.14, intron 1 of 26) -7805 ENSMUSG00000029093.14 ENSMUSG00000029093 ENSMUST00000141508 Sorcs2 protein_coding Interval_137864 chr6 83031756 83032020 + 0 NA TTS (ENSMUSG00000068335.6) protein_coding-TTS (ENSMUSG00000068335.6) 673 ENSMUSG00000068335.6 ENSMUSG00000068335 ENSMUST00000204900 Dok1 protein_coding Interval_107353 chr3 106482069 106483597 + 0 NA exon (ENSMUSG00000091575.2, exon 1 of 1) processed_transcript-exon (ENSMUSG00000091575.2, exon 1 of 1) 628 ENSMUSG00000091575.2 ENSMUSG00000091575 ENSMUST00000187757 2010016I18Rik processed_transcript Interval_124828 chr5 55844037 55844292 + 0 NA Intergenic Intergenic -51277 ENSMUSG00000105678.1 ENSMUSG00000105678 ENSMUST00000195958 Gm43705 TEC Interval_36004 chr12 33225188 33225408 + 0 NA intron (ENSMUSG00000020564.17, intron 3 of 12) protein_coding-intron (ENSMUSG00000020564.17, intron 2 of 2) 3556 ENSMUSG00000079143.3 ENSMUSG00000079143 ENSMUST00000155877 Atxn7l1os1 antisense Interval_157467 chr8 70554756 70555704 + 0 NA intron (ENSMUSG00000070002.7, intron 1 of 11) protein_coding-intron (ENSMUSG00000070002.7, intron 1 of 11) 15773 ENSMUSG00000070002.7 ENSMUSG00000070002 ENSMUST00000093454 Ell protein_coding Interval_141761 chr6 134275376 134275825 + 0 NA Intergenic Intergenic -29234 ENSMUSG00000108263.1 ENSMUSG00000108263 ENSMUST00000204426 1700051K13Rik TEC Interval_100680 chr2 171285492 171286479 + 0 NA Intergenic Intergenic 20446 ENSMUSG00000088505.1 ENSMUSG00000088505 ENSMUST00000157880 Gm26489 scaRNA Interval_162225 chr8 126157462 126158047 + 0 NA intron (ENSMUSG00000057060.8, intron 1 of 5) protein_coding-intron (ENSMUSG00000057060.8, intron 1 of 5) 18759 ENSMUSG00000057060.8 ENSMUSG00000057060 ENSMUST00000108759 Slc35f3 protein_coding Interval_90848 chr2 32945278 32947078 + 0 NA intron (ENSMUSG00000026792.16, intron 11 of 25) protein_coding-intron (ENSMUSG00000026792.16, intron 10 of 24) -7379 ENSMUSG00000026792.16 ENSMUSG00000026792 ENSMUST00000138015 Lrsam1 protein_coding Interval_61401 chr15 81355176 81355811 + 0 NA intron (ENSMUSG00000022404.8, intron 1 of 4) protein_coding-intron (ENSMUSG00000022404.8, intron 1 of 8) 5284 ENSMUSG00000022404.8 ENSMUSG00000022404 ENSMUST00000231078 Slc25a17 protein_coding Interval_69905 chr17 3095185 3095418 + 0 NA Intergenic Intergenic -1717 ENSMUSG00000116817.1 ENSMUSG00000116817 ENSMUST00000231620 Gm5679 processed_pseudogene Interval_169049 chr9 91166910 91167432 + 0 NA Intergenic Intergenic -36653 ENSMUSG00000103938.1 ENSMUSG00000103938 ENSMUST00000195491 Gm36960 TEC Interval_87615 chr19 53746165 53746390 + 0 NA intron (ENSMUSG00000043639.15, intron 1 of 13) protein_coding-intron (ENSMUSG00000043639.15, intron 1 of 13) 22033 ENSMUSG00000089807.1 ENSMUSG00000089807 ENSMUST00000161107 Gm16298 processed_pseudogene Interval_24352 chr11 32618746 32619512 + 0 NA intron (ENSMUSG00000020272.8, intron 18 of 18) protein_coding-intron (ENSMUSG00000020272.8, intron 18 of 18) -23775 ENSMUSG00000020271.17 ENSMUSG00000020271 ENSMUST00000143290 Fbxw11 protein_coding Interval_132970 chr5 149020445 149021258 + 0 NA Intergenic Intergenic -5038 ENSMUSG00000085971.4 ENSMUSG00000085971 ENSMUST00000202128 Gm15411 processed_transcript Interval_35278 chr12 19616155 19617393 + 0 NA intron (ENSMUSG00000113957.1, intron 1 of 1) unprocessed_pseudogene-intron (ENSMUSG00000113957.1, intron 1 of 1) 9845 ENSMUSG00000113957.1 ENSMUSG00000113957 ENSMUST00000221254 Gm9257 unprocessed_pseudogene Interval_122063 chr5 15838033 15838855 + 0 NA Intergenic Intergenic -31803 ENSMUSG00000105916.1 ENSMUSG00000105916 ENSMUST00000200477 Gm42453 processed_pseudogene Interval_125643 chr5 72985581 72985780 + 0 NA Intergenic Intergenic -10978 ENSMUSG00000063656.6 ENSMUSG00000063656 ENSMUST00000043711 Gm10135 protein_coding Interval_33156 chr11 114812666 114813174 + 0 NA Intergenic Intergenic 13996 ENSMUSG00000034677.9 ENSMUSG00000034677 ENSMUST00000106584 Gpr142 protein_coding Interval_46797 chr13 70625382 70627000 + 0 NA intron (ENSMUSG00000034525.7, intron 1 of 11) protein_coding-intron (ENSMUSG00000034525.7, intron 1 of 18) -23953 ENSMUSG00000113334.1 ENSMUSG00000113334 ENSMUST00000222964 D030007L05Rik lincRNA Interval_142665 chr6 144908030 144908876 + 0 NA Intergenic Intergenic -104821 ENSMUSG00000087850.1 ENSMUSG00000087850 ENSMUST00000157225 Gm22792 snoRNA Interval_45641 chr13 56432869 56433954 + 0 NA exon (ENSMUSG00000110477.1, exon 4 of 4) protein_coding-exon (ENSMUSG00000110477.1, exon 4 of 4) -4944 ENSMUSG00000021509.5 ENSMUSG00000021509 ENSMUST00000021971 Slc25a48 protein_coding Interval_62571 chr15 94768919 94769885 + 0 NA intron (ENSMUSG00000063296.5, intron 3 of 7) protein_coding-intron (ENSMUSG00000063296.5, intron 3 of 7) -88016 ENSMUSG00000095169.1 ENSMUSG00000095169 ENSMUST00000103977 Gm25546 snoRNA Interval_141660 chr6 132646115 132646920 + 0 NA intron (ENSMUSG00000067541.7, intron 1 of 5) protein_coding-intron (ENSMUSG00000067541.7, intron 1 of 5) 5009 ENSMUSG00000067541.7 ENSMUSG00000067541 ENSMUST00000205081 A630073D07Rik protein_coding Interval_6274 chr1 105102972 105103176 + 0 NA Intergenic Intergenic -13380 ENSMUSG00000099669.1 ENSMUSG00000099669 ENSMUST00000187882 Gm29012 lincRNA Interval_20045 chr10 112563960 112564154 + 0 NA Intergenic Intergenic 107801 ENSMUSG00000035681.7 ENSMUSG00000035681 ENSMUST00000218827 Kcnc2 protein_coding Interval_128666 chr5 114608433 114608744 + 0 NA intron (ENSMUSG00000041930.7, intron 2 of 2) protein_coding-intron (ENSMUSG00000041930.7, intron 2 of 2) 36311 ENSMUSG00000014158.12 ENSMUSG00000014158 ENSMUST00000212469 Trpv4 protein_coding Interval_159130 chr8 90887091 90887423 + 0 NA intron (ENSMUSG00000056608.14, intron 2 of 39) protein_coding-intron (ENSMUSG00000056608.14, intron 2 of 39) -5898 ENSMUSG00000109863.1 ENSMUSG00000109863 ENSMUST00000211364 Gm45643 TEC Interval_83678 chr19 3679245 3679867 + 0 NA intron (ENSMUSG00000024913.16, intron 1 of 22) protein_coding-intron (ENSMUSG00000024913.16, intron 1 of 22) 7005 ENSMUSG00000024913.16 ENSMUSG00000024913 ENSMUST00000176867 Lrp5 protein_coding Interval_36459 chr12 45161836 45162266 + 0 NA TTS (ENSMUSG00000112112.1) lincRNA-TTS (ENSMUSG00000112112.1) 53044 ENSMUSG00000088852.1 ENSMUSG00000088852 ENSMUST00000158227 Gm24731 snoRNA Interval_149838 chr7 101928367 101928695 + 0 NA intron (ENSMUSG00000064307.13, intron 1 of 4) protein_coding-intron (ENSMUSG00000064307.13, intron 1 of 5) -7757 ENSMUSG00000064307.13 ENSMUSG00000064307 ENSMUST00000106963 Lrrc51 protein_coding Interval_14208 chr10 28879178 28879530 + 0 NA intron (ENSMUSG00000049109.15, intron 5 of 5) protein_coding-intron (ENSMUSG00000049109.15, intron 5 of 5) -41143 ENSMUSG00000111991.1 ENSMUSG00000111991 ENSMUST00000219942 Gm47835 unprocessed_pseudogene Interval_103749 chr3 52322348 52323163 + 0 NA intron (ENSMUSG00000044167.6, intron 1 of 2) protein_coding-intron (ENSMUSG00000044167.6, intron 1 of 2) 40514 ENSMUSG00000102844.1 ENSMUSG00000102844 ENSMUST00000193915 Gm38034 TEC Interval_73805 chr17 43894343 43894745 + 0 NA intron (ENSMUSG00000039601.16, intron 2 of 4) protein_coding-intron (ENSMUSG00000039601.16, intron 2 of 4) 67297 ENSMUSG00000088576.1 ENSMUSG00000088576 ENSMUST00000157951 Gm24532 misc_RNA Interval_14181 chr10 28425325 28426130 + 0 NA intron (ENSMUSG00000019889.10, intron 7 of 14) protein_coding-intron (ENSMUSG00000019889.10, intron 7 of 31) -161266 ENSMUSG00000019889.10 ENSMUSG00000019889 ENSMUST00000220404 Ptprk protein_coding Interval_104257 chr3 62226309 62226787 + 0 NA Intergenic Intergenic 103341 ENSMUSG00000103322.1 ENSMUSG00000103322 ENSMUST00000195726 Gm37404 TEC Interval_25504 chr11 49308154 49309143 + 0 NA intron (ENSMUSG00000100923.2, intron 1 of 1) protein_coding-intron (ENSMUSG00000100923.2, intron 1 of 1) 3907 ENSMUSG00000100923.2 ENSMUSG00000100923 ENSMUST00000187570 Olfr10 protein_coding Interval_25057 chr11 43563865 43564063 + 0 NA intron (ENSMUSG00000044707.7, intron 3 of 5) protein_coding-intron (ENSMUSG00000044707.7, intron 3 of 5) 17152 ENSMUSG00000085239.1 ENSMUSG00000085239 ENSMUST00000130874 Gm12150 antisense Interval_30437 chr11 94351467 94352641 + 0 NA promoter-TSS (ENSMUSG00000020865.16) protein_coding-promoter-TSS (ENSMUSG00000020865.16) 18601 ENSMUSG00000020864.13 ENSMUSG00000020864 ENSMUST00000124087 Ankrd40 protein_coding Interval_15370 chr10 45145803 45147003 + 0 NA intron (ENSMUSG00000019849.11, intron 10 of 14) protein_coding-intron (ENSMUSG00000019849.11, intron 10 of 14) -31695 ENSMUSG00000019848.14 ENSMUSG00000019848 ENSMUST00000161803 Popdc3 protein_coding Interval_43162 chr13 24782527 24783173 + 0 NA Intergenic Intergenic -19170 ENSMUSG00000019132.11 ENSMUSG00000019132 ENSMUST00000155575 BC005537 protein_coding Interval_124230 chr5 41776042 41776272 + 0 NA Intergenic Intergenic -11656 ENSMUSG00000049691.8 ENSMUSG00000049691 ENSMUST00000060820 Nkx3-2 protein_coding Interval_14306 chr10 30718458 30720969 + 0 NA intron (ENSMUSG00000039697.16, intron 1 of 5) protein_coding-intron (ENSMUSG00000039697.16, intron 3 of 15) 24249 ENSMUSG00000110894.1 ENSMUSG00000110894 ENSMUST00000215097 Gm48335 TEC Interval_106818 chr3 101084790 101085741 + 0 NA exon (ENSMUSG00000105717.1, exon 1 of 1) sense_intronic-exon (ENSMUSG00000105717.1, exon 1 of 1) 2128 ENSMUSG00000105717.1 ENSMUSG00000105717 ENSMUST00000200367 Gm43465 sense_intronic Interval_91068 chr2 34799316 34800072 + 0 NA promoter-TSS (ENSMUSG00000070953.13) protein_coding-promoter-TSS (ENSMUSG00000070953.13) 218 ENSMUSG00000070953.13 ENSMUSG00000070953 ENSMUST00000144113 Rabepk protein_coding Interval_38357 chr12 77732061 77732262 + 0 NA Intergenic Intergenic 49100 ENSMUSG00000111903.1 ENSMUSG00000111903 ENSMUST00000219952 4930458K08Rik lincRNA Interval_137257 chr6 70804675 70806471 + 0 NA Intergenic Intergenic -13570 ENSMUSG00000053604.5 ENSMUSG00000053604 ENSMUST00000129244 Rpia protein_coding Interval_135414 chr6 39223534 39223913 + 0 NA Intergenic Intergenic -16391 ENSMUSG00000107365.1 ENSMUSG00000107365 ENSMUST00000200801 Gm43479 lincRNA Interval_132678 chr5 147109835 147110860 + 0 NA intron (ENSMUSG00000029642.11, intron 1 of 1) protein_coding-intron (ENSMUSG00000029642.11, intron 2 of 2) -9294 ENSMUSG00000083988.1 ENSMUSG00000083988 ENSMUST00000120308 Rps10-ps4 processed_pseudogene Interval_13994 chr10 25359330 25360671 + 0 NA intron (ENSMUSG00000019978.16, intron 1 of 17) protein_coding-intron (ENSMUSG00000019978.16, intron 1 of 19) 56185 ENSMUSG00000112445.1 ENSMUSG00000112445 ENSMUST00000219193 Gm47830 processed_pseudogene Interval_147771 chr7 73469104 73469393 + 0 NA promoter-TSS (ENSMUSG00000078671.11) protein_coding-promoter-TSS (ENSMUSG00000078671.11) -8615 ENSMUSG00000108741.1 ENSMUSG00000108741 ENSMUST00000206316 Gm44553 TEC Interval_27145 chr11 63322461 63322754 + 0 NA Intergenic Intergenic -9296 ENSMUSG00000081600.3 ENSMUSG00000081600 ENSMUST00000119246 Gm12286 processed_pseudogene Interval_51426 chr14 27419201 27419693 + 0 NA Intergenic Intergenic -38597 ENSMUSG00000093034.1 ENSMUSG00000093034 ENSMUST00000175293 Gm23633 miRNA Interval_164381 chr9 36570435 36570665 + 0 NA Intergenic Intergenic 2849 ENSMUSG00000110880.1 ENSMUSG00000110880 ENSMUST00000214753 Gm48431 unprocessed_pseudogene Interval_23555 chr11 23345639 23345879 + 0 NA intron (ENSMUSG00000056342.16, intron 6 of 79) protein_coding-intron (ENSMUSG00000056342.16, intron 6 of 79) 38864 ENSMUSG00000056342.16 ENSMUSG00000056342 ENSMUST00000125701 Usp34 protein_coding Interval_11076 chr1 179205220 179205702 + 0 NA intron (ENSMUSG00000055067.15, intron 5 of 11) protein_coding-intron (ENSMUSG00000055067.15, intron 2 of 8) -287847 ENSMUSG00000089713.1 ENSMUSG00000089713 ENSMUST00000162545 Gm16564 antisense Interval_31345 chr11 100168208 100170126 + 0 NA Intergenic Intergenic 24079 ENSMUSG00000051617.3 ENSMUSG00000051617 ENSMUST00000059707 Krt9 protein_coding Interval_1564 chr1 26364274 26364662 + 0 NA Intergenic Intergenic -101768 ENSMUSG00000099458.1 ENSMUSG00000099458 ENSMUST00000190716 Gm19123 processed_pseudogene Interval_77007 chr17 85612673 85613177 + 0 NA promoter-TSS (ENSMUSG00000038805.10) protein_coding-promoter-TSS (ENSMUSG00000038805.10) -457 ENSMUSG00000099159.1 ENSMUSG00000099159 ENSMUST00000184174 Gm27801 misc_RNA Interval_108328 chr3 124054704 124054883 + 0 NA Intergenic Intergenic -69689 ENSMUSG00000081939.2 ENSMUSG00000081939 ENSMUST00000118055 Gm15399 processed_pseudogene Interval_116048 chr4 107223331 107224251 + 0 NA Intergenic Intergenic 14611 ENSMUSG00000070877.4 ENSMUSG00000070877 ENSMUST00000094916 Ldlrad1 protein_coding Interval_144103 chr7 19429124 19429924 + 0 NA exon (ENSMUSG00000030397.11, exon 15 of 17) protein_coding-exon (ENSMUSG00000030397.11, exon 15 of 17) -8107 ENSMUSG00000040705.2 ENSMUSG00000040705 ENSMUST00000047020 A930016O22Rik antisense Interval_157465 chr8 70530461 70530793 + 0 NA promoter-TSS (ENSMUSG00000019428.16) protein_coding-promoter-TSS (ENSMUSG00000019428.16) 2865 ENSMUSG00000019428.16 ENSMUSG00000019428 ENSMUST00000134893 Fkbp8 protein_coding Interval_104539 chr3 67541246 67541744 + 0 NA Intergenic Intergenic 11930 ENSMUSG00000103718.1 ENSMUSG00000103718 ENSMUST00000195865 Gm35299 lincRNA Interval_137986 chr6 83985718 83985966 + 0 NA exon (ENSMUSG00000030016.14, exon 2 of 2) protein_coding-exon (ENSMUSG00000030016.14, exon 2 of 2) 23565 ENSMUSG00000107534.1 ENSMUSG00000107534 ENSMUST00000204953 Gm43920 sense_intronic Interval_161010 chr8 116905620 116906157 + 0 NA intron (ENSMUSG00000014633.15, intron 2 of 4) protein_coding-intron (ENSMUSG00000014633.15, intron 2 of 2) -11364 ENSMUSG00000014633.15 ENSMUSG00000014633 ENSMUST00000128304 Cmc2 protein_coding Interval_105816 chr3 89481254 89481981 + 0 NA Intergenic Intergenic 27076 ENSMUSG00000027952.16 ENSMUSG00000027952 ENSMUST00000184515 Pmvk protein_coding Interval_93552 chr2 74073186 74074206 + 0 NA Intergenic Intergenic 28646 ENSMUSG00000085387.1 ENSMUSG00000085387 ENSMUST00000151443 A630050E04Rik lincRNA Interval_99680 chr2 164161701 164162634 + 0 NA Intergenic Intergenic -4646 ENSMUSG00000084446.1 ENSMUSG00000084446 ENSMUST00000122497 n-R5s207 rRNA Interval_123390 chr5 32132818 32133837 + 0 NA promoter-TSS (ENSMUSG00000102759.1) TEC-promoter-TSS (ENSMUSG00000102759.1) -156 ENSMUSG00000102759.1 ENSMUSG00000102759 ENSMUST00000195772 Gm10463 TEC Interval_858 chr1 12732377 12733205 + 0 NA intron (ENSMUSG00000016918.15, intron 2 of 3) protein_coding-intron (ENSMUSG00000016918.15, intron 2 of 21) 13327 ENSMUSG00000016918.15 ENSMUSG00000016918 ENSMUST00000185780 Sulf1 protein_coding Interval_156570 chr8 52308010 52308206 + 0 NA Intergenic Intergenic -28637 ENSMUSG00000098231.1 ENSMUSG00000098231 ENSMUST00000182090 Gm6463 processed_pseudogene Interval_29584 chr11 85175759 85176613 + 0 NA intron (ENSMUSG00000018479.12, intron 3 of 4) protein_coding-intron (ENSMUSG00000018479.12, intron 4 of 5) 5782 ENSMUSG00000018479.12 ENSMUSG00000018479 ENSMUST00000018623 1700125H20Rik protein_coding Interval_43916 chr13 38024963 38026404 + 0 NA exon (ENSMUSG00000044566.15, exon 4 of 13) protein_coding-exon (ENSMUSG00000044566.15, exon 4 of 13) 11254 ENSMUSG00000044566.15 ENSMUSG00000044566 ENSMUST00000131066 Cage1 protein_coding Interval_146442 chr7 45929172 45929849 + 0 NA exon (ENSMUSG00000040189.18, exon 4 of 4) protein_coding-exon (ENSMUSG00000040189.18, exon 4 of 4) 1112 ENSMUSG00000040189.18 ENSMUSG00000040189 ENSMUST00000210867 Ccdc114 protein_coding Interval_4569 chr1 75159053 75159675 + 0 NA Intergenic Intergenic -9564 ENSMUSG00000026197.12 ENSMUSG00000026197 ENSMUST00000186227 Zfand2b protein_coding Interval_22689 chr11 13021999 13022365 + 0 NA Intergenic Intergenic 24516 ENSMUSG00000084055.1 ENSMUSG00000084055 ENSMUST00000117869 Gm12004 processed_pseudogene Interval_120206 chr4 144264616 144264849 + 0 NA Intergenic Intergenic 15747 ENSMUSG00000036749.15 ENSMUSG00000036749 ENSMUST00000133357 Pramel5 protein_coding Interval_63324 chr15 100307114 100308183 + 0 NA intron (ENSMUSG00000054619.7, intron 1 of 1) protein_coding-intron (ENSMUSG00000054619.7, intron 1 of 1) 3420 ENSMUSG00000054619.7 ENSMUSG00000054619 ENSMUST00000230018 Mettl7a1 protein_coding Interval_104461 chr3 65974275 65975548 + 0 NA Intergenic Intergenic 4997 ENSMUSG00000102652.1 ENSMUSG00000102652 ENSMUST00000193314 Gm37078 TEC Interval_162099 chr8 125087938 125088743 + 0 NA exon (ENSMUSG00000043051.17, exon 2 of 13) protein_coding-exon (ENSMUSG00000043051.17, exon 2 of 13) 353 ENSMUSG00000043051.17 ENSMUSG00000043051 ENSMUST00000126111 Disc1 protein_coding Interval_74545 chr17 53209779 53210553 + 0 NA Intergenic Intergenic 13715 ENSMUSG00000117244.1 ENSMUSG00000117244 ENSMUST00000233156 Gm9210 processed_pseudogene Interval_89381 chr2 20208758 20210085 + 0 NA intron (ENSMUSG00000036617.17, intron 2 of 7) protein_coding-intron (ENSMUSG00000036617.17, intron 2 of 7) 26643 ENSMUSG00000081128.1 ENSMUSG00000081128 ENSMUST00000120816 Gm13328 processed_pseudogene Interval_59406 chr15 52477639 52478767 + 0 NA promoter-TSS (ENSMUSG00000057262.2) processed_pseudogene-promoter-TSS (ENSMUSG00000057262.2) 25 ENSMUSG00000057262.2 ENSMUSG00000057262 ENSMUST00000081993 Rpl15-ps6 processed_pseudogene Interval_162205 chr8 125949638 125951058 + 0 NA Intergenic Intergenic 39898 ENSMUSG00000031853.5 ENSMUSG00000031853 ENSMUST00000034316 Map3k21 protein_coding Interval_18644 chr10 88768888 88769281 + 0 NA intron (ENSMUSG00000004356.8, intron 40 of 61) protein_coding-intron (ENSMUSG00000004356.8, intron 40 of 61) -37983 ENSMUSG00000069540.4 ENSMUSG00000069540 ENSMUST00000092231 Gm4925 transcribed_processed_pseudogene Interval_47914 chr13 94344400 94345032 + 0 NA Intergenic Intergenic 14207 ENSMUSG00000042857.3 ENSMUSG00000042857 ENSMUST00000221110 Gm9776 bidirectional_promoter_lncRNA Interval_71989 chr17 27457726 27458518 + 0 NA intron (ENSMUSG00000063239.17, intron 2 of 9) protein_coding-intron (ENSMUSG00000063239.17, intron 3 of 10) 10767 ENSMUSG00000116568.1 ENSMUSG00000116568 ENSMUST00000231818 Gm49790 TEC Interval_20159 chr10 115329894 115330367 + 0 NA Intergenic Intergenic 14484 ENSMUSG00000112301.1 ENSMUSG00000112301 ENSMUST00000218348 Gm10752 TEC Interval_135090 chr6 35323287 35323747 + 0 NA intron (ENSMUSG00000047420.8, intron 1 of 2) protein_coding-intron (ENSMUSG00000047420.8, intron 1 of 2) 2624 ENSMUSG00000047420.8 ENSMUSG00000047420 ENSMUST00000051176 Fam180a protein_coding Interval_112493 chr4 41602767 41603096 + 0 NA exon (ENSMUSG00000061322.15, exon 6 of 20) protein_coding-exon (ENSMUSG00000061322.15, exon 6 of 20) -28713 ENSMUSG00000061322.15 ENSMUSG00000061322 ENSMUST00000119127 Dnaic1 protein_coding Interval_78000 chr18 6553597 6553870 + 0 NA Intergenic Intergenic -3397 ENSMUSG00000117425.1 ENSMUSG00000117425 ENSMUST00000234402 Gm7464 processed_pseudogene Interval_66969 chr16 38916834 38917270 + 0 NA intron (ENSMUSG00000022790.14, intron 1 of 6) protein_coding-intron (ENSMUSG00000022790.14, intron 1 of 6) -10157 ENSMUSG00000089607.1 ENSMUSG00000089607 ENSMUST00000158982 Gm22500 snRNA Interval_118249 chr4 129810621 129811993 + 0 NA promoter-TSS (ENSMUSG00000028788.14) protein_coding-promoter-TSS (ENSMUSG00000028788.14) -9401 ENSMUSG00000028788.14 ENSMUSG00000028788 ENSMUST00000141754 Ptp4a2 protein_coding Interval_126567 chr5 90323121 90323769 + 0 NA intron (ENSMUSG00000055204.15, intron 1 of 26) protein_coding-intron (ENSMUSG00000055204.15, intron 1 of 33) 42740 ENSMUSG00000055204.15 ENSMUSG00000055204 ENSMUST00000202226 Ankrd17 protein_coding Interval_74567 chr17 53478598 53480049 + 0 NA promoter-TSS (ENSMUSG00000017831.8) protein_coding-promoter-TSS (ENSMUSG00000017831.8) 36 ENSMUSG00000017831.8 ENSMUSG00000017831 ENSMUST00000233347 Rab5a protein_coding Interval_8634 chr1 145254964 145255688 + 0 NA Intergenic Intergenic 36154 ENSMUSG00000088579.1 ENSMUSG00000088579 ENSMUST00000157954 Gm25460 snoRNA Interval_104111 chr3 58677292 58677835 + 0 NA intron (ENSMUSG00000036432.8, intron 1 of 1) protein_coding-intron (ENSMUSG00000036432.8, intron 1 of 1) 8474 ENSMUSG00000036432.8 ENSMUSG00000036432 ENSMUST00000145032 Siah2 protein_coding Interval_154265 chr8 13924462 13925221 + 0 NA intron (ENSMUSG00000038365.8, intron 5 of 10) protein_coding-intron (ENSMUSG00000038365.8, intron 5 of 9) -2138 ENSMUSG00000038365.8 ENSMUSG00000038365 ENSMUST00000209310 Fbxo25 protein_coding Interval_15239 chr10 43593119 43593827 + 0 NA promoter-TSS (ENSMUSG00000075184.3) lincRNA-promoter-TSS (ENSMUSG00000075184.3) 34 ENSMUSG00000075184.3 ENSMUSG00000075184 ENSMUST00000215845 F930017D23Rik lincRNA Interval_11144 chr1 179627719 179628914 + 0 NA TTS (ENSMUSG00000038949.8) protein_coding-TTS (ENSMUSG00000038949.8) -55529 ENSMUSG00000038936.13 ENSMUSG00000038936 ENSMUST00000192611 Sccpdh protein_coding Interval_166735 chr9 62338072 62339105 + 0 NA Intergenic Intergenic -3876 ENSMUSG00000032249.14 ENSMUSG00000032249 ENSMUST00000145679 Anp32a protein_coding Interval_133482 chr6 5564162 5564686 + 0 NA Intergenic Intergenic -68163 ENSMUSG00000019577.6 ENSMUSG00000019577 ENSMUST00000134068 Pdk4 protein_coding Interval_64338 chr16 10606789 10607012 + 0 NA intron (ENSMUSG00000068663.14, intron 1 of 14) protein_coding-intron (ENSMUSG00000068663.14, intron 10 of 20) 61536 ENSMUSG00000068663.14 ENSMUSG00000068663 ENSMUST00000145866 Clec16a protein_coding Interval_136139 chr6 51441915 51442823 + 0 NA intron (ENSMUSG00000029832.16, intron 1 of 2) protein_coding-intron (ENSMUSG00000029832.16, intron 1 of 3) 9620 ENSMUSG00000029832.16 ENSMUSG00000029832 ENSMUST00000160133 Nfe2l3 protein_coding Interval_67224 chr16 44538482 44538698 + 0 NA intron (ENSMUSG00000022687.12, intron 1 of 18) protein_coding-intron (ENSMUSG00000022687.12, intron 1 of 18) 19539 ENSMUSG00000093046.1 ENSMUSG00000093046 ENSMUST00000175305 Mir3081 miRNA Interval_69433 chr16 93423002 93424943 + 0 NA intron (ENSMUSG00000099968.7, intron 1 of 2) lincRNA-intron (ENSMUSG00000099968.7, intron 1 of 2) 34833 ENSMUSG00000099968.7 ENSMUSG00000099968 ENSMUST00000231859 1700029J03Rik lincRNA Interval_108920 chr3 133350309 133350827 + 0 NA intron (ENSMUSG00000028013.16, intron 7 of 8) protein_coding-intron (ENSMUSG00000028013.16, intron 7 of 11) 29100 ENSMUSG00000028013.16 ENSMUSG00000028013 ENSMUST00000196807 Ppa2 protein_coding Interval_93198 chr2 71096323 71096542 + 0 NA TTS (ENSMUSG00000041966.18) protein_coding-TTS (ENSMUSG00000041966.18) -21491 ENSMUSG00000027015.4 ENSMUSG00000027015 ENSMUST00000028403 Cybrd1 protein_coding Interval_3659 chr1 60477642 60477877 + 0 NA TTS (ENSMUSG00000026782.15) protein_coding-TTS (ENSMUSG00000026782.15) 25506 ENSMUSG00000026014.15 ENSMUSG00000026014 ENSMUST00000142258 Raph1 protein_coding Interval_89846 chr2 25947880 25948315 + 0 NA intron (ENSMUSG00000026933.17, intron 3 of 14) protein_coding-intron (ENSMUSG00000026933.17, intron 5 of 16) 35185 ENSMUSG00000026933.17 ENSMUSG00000026933 ENSMUST00000127823 Camsap1 protein_coding Interval_149150 chr7 95285421 95286176 + 0 NA Intergenic Intergenic 113934 ENSMUSG00000084636.1 ENSMUSG00000084636 ENSMUST00000122687 Gm23884 misc_RNA Interval_128771 chr5 115173082 115173325 + 0 NA exon (ENSMUSG00000029544.16, exon 5 of 7) protein_coding-exon (ENSMUSG00000029544.16, exon 5 of 7) 10941 ENSMUSG00000029544.16 ENSMUSG00000029544 ENSMUST00000201900 Cabp1 protein_coding Interval_79217 chr18 25752881 25755611 + 0 NA promoter-TSS (ENSMUSG00000024268.16) protein_coding-promoter-TSS (ENSMUSG00000024268.16) 40476 ENSMUSG00000114511.1 ENSMUSG00000114511 ENSMUST00000224766 0710001A04Rik antisense Interval_59719 chr15 58888216 58889828 + 0 NA promoter-TSS (ENSMUSG00000037075.7) protein_coding-promoter-TSS (ENSMUSG00000037075.7) -276 ENSMUSG00000115463.1 ENSMUSG00000115463 ENSMUST00000228787 Gm49356 protein_coding Interval_24024 chr11 29596430 29597896 + 0 NA intron (ENSMUSG00000086707.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000086707.1, intron 1 of 1) 1376 ENSMUSG00000086707.1 ENSMUSG00000086707 ENSMUST00000137364 Gm12088 lincRNA Interval_149544 chr7 99471626 99472120 + 0 NA promoter-TSS (ENSMUSG00000035298.8) protein_coding-promoter-TSS (ENSMUSG00000035298.8) 2910 ENSMUSG00000035298.8 ENSMUSG00000035298 ENSMUST00000152424 Klhl35 protein_coding Interval_102633 chr3 28723327 28723973 + 0 NA intron (ENSMUSG00000027690.13, intron 1 of 3) protein_coding-intron (ENSMUSG00000027690.13, intron 8 of 10) 2133 ENSMUSG00000027690.13 ENSMUSG00000027690 ENSMUST00000169047 Slc2a2 protein_coding Interval_123655 chr5 34319914 34320668 + 0 NA intron (ENSMUSG00000109572.1, intron 11 of 15) lincRNA-intron (ENSMUSG00000107287.1, intron 1 of 1) 7239 ENSMUSG00000107287.1 ENSMUSG00000107287 ENSMUST00000200791 Gm43458 lincRNA Interval_54720 chr14 73570019 73570747 + 0 NA intron (ENSMUSG00000022110.13, intron 4 of 10) protein_coding-intron (ENSMUSG00000022110.13, intron 4 of 11) 17751 ENSMUSG00000022110.13 ENSMUSG00000022110 ENSMUST00000159165 Sucla2 protein_coding Interval_132075 chr5 142636658 142637296 + 0 NA intron (ENSMUSG00000029578.15, intron 1 of 5) protein_coding-intron (ENSMUSG00000029578.15, intron 1 of 11) 9279 ENSMUSG00000029578.15 ENSMUSG00000029578 ENSMUST00000143980 Wipi2 protein_coding Interval_52837 chr14 50973606 50974052 + 0 NA Intergenic Intergenic 5107 ENSMUSG00000115312.1 ENSMUSG00000115312 ENSMUST00000228819 Gm8518 processed_pseudogene Interval_57190 chr15 7263630 7264575 + 0 NA intron (ENSMUSG00000042961.13, intron 6 of 15) protein_coding-intron (ENSMUSG00000042961.13, intron 6 of 21) -9334 ENSMUSG00000042961.13 ENSMUSG00000042961 ENSMUST00000159726 Egflam protein_coding Interval_69098 chr16 90639129 90639638 + 0 NA Intergenic Intergenic -28944 ENSMUSG00000116591.1 ENSMUSG00000116591 ENSMUST00000231764 Gm49715 lincRNA Interval_118640 chr4 132939024 132939909 + 0 NA Intergenic Intergenic -8149 ENSMUSG00000087911.1 ENSMUSG00000087911 ENSMUST00000157286 Gm24913 snRNA Interval_91461 chr2 39034131 39035211 + 0 NA intron (ENSMUSG00000026754.16, intron 13 of 23) protein_coding-intron (ENSMUSG00000026754.16, intron 13 of 22) 6894 ENSMUSG00000065127.1 ENSMUSG00000065127 ENSMUST00000083193 Gm26127 snRNA Interval_10908 chr1 176868819 176869125 + 0 NA intron (ENSMUSG00000026504.17, intron 11 of 18) protein_coding-intron (ENSMUSG00000026504.17, intron 10 of 17) -10862 ENSMUSG00000093132.1 ENSMUSG00000093132 ENSMUST00000175391 Gm25993 miRNA Interval_161231 chr8 118925445 118926265 + 0 NA intron (ENSMUSG00000031841.19, intron 5 of 7) protein_coding-intron (ENSMUSG00000031841.19, intron 5 of 13) 198955 ENSMUSG00000087707.1 ENSMUSG00000087707 ENSMUST00000157082 Gm22999 snoRNA Interval_110076 chr3 153051222 153052388 + 0 NA Intergenic Intergenic -69753 ENSMUSG00000039037.5 ENSMUSG00000039037 ENSMUST00000161757 St6galnac5 protein_coding Interval_55960 chr14 103289834 103290102 + 0 NA intron (ENSMUSG00000033004.16, intron 10 of 84) protein_coding-intron (ENSMUSG00000033004.16, intron 10 of 84) 56832 ENSMUSG00000033004.16 ENSMUSG00000033004 ENSMUST00000162537 Mycbp2 protein_coding Interval_81108 chr18 53925201 53926125 + 0 NA intron (ENSMUSG00000073563.3, intron 6 of 12) protein_coding-intron (ENSMUSG00000073563.3, intron 6 of 12) -58658 ENSMUSG00000069376.2 ENSMUSG00000069376 ENSMUST00000091897 Gm5507 processed_pseudogene Interval_34891 chr12 13028018 13028331 + 0 NA Intergenic Intergenic 26555 ENSMUSG00000113928.1 ENSMUSG00000113928 ENSMUST00000220969 Gm48209 lincRNA Interval_115618 chr4 101426003 101427244 + 0 NA intron (ENSMUSG00000028527.18, intron 1 of 4) protein_coding-intron (ENSMUSG00000028527.18, intron 2 of 5) -20600 ENSMUSG00000028527.18 ENSMUSG00000028527 ENSMUST00000155749 Ak4 protein_coding Interval_58650 chr15 36811370 36812083 + 0 NA Intergenic Intergenic -12955 ENSMUSG00000093021.1 ENSMUSG00000093021 ENSMUST00000175280 Gm25303 miRNA Interval_167194 chr9 66084619 66085591 + 0 NA Intergenic Intergenic -15390 ENSMUSG00000039452.6 ENSMUSG00000039452 ENSMUST00000214332 Snx22 protein_coding Interval_53376 chr14 56757932 56758335 + 0 NA intron (ENSMUSG00000021938.12, intron 4 of 4) protein_coding-intron (ENSMUSG00000021938.12, intron 5 of 8) 19794 ENSMUSG00000021938.12 ENSMUSG00000021938 ENSMUST00000168575 Pspc1 protein_coding Interval_107098 chr3 103524767 103525094 + 0 NA Intergenic Intergenic -50448 ENSMUSG00000027849.19 ENSMUSG00000027849 ENSMUST00000118563 Syt6 protein_coding Interval_150850 chr7 115685709 115686118 + 0 NA intron (ENSMUSG00000051910.13, intron 5 of 11) protein_coding-intron (ENSMUSG00000051910.13, intron 5 of 16) 160238 ENSMUSG00000051910.13 ENSMUSG00000051910 ENSMUST00000206912 Sox6 protein_coding Interval_69882 chr16 97859199 97860854 + 0 NA intron (ENSMUSG00000045975.8, intron 3 of 3) protein_coding-intron (ENSMUSG00000045975.8, intron 13 of 13) 17265 ENSMUSG00000105138.1 ENSMUSG00000105138 ENSMUST00000200252 Mir6964 miRNA Interval_26914 chr11 61537518 61537864 + 0 NA intron (ENSMUSG00000001036.17, intron 3 of 10) protein_coding-intron (ENSMUSG00000001036.17, intron 2 of 9) 9936 ENSMUSG00000085459.1 ENSMUSG00000085459 ENSMUST00000138136 Gm12272 antisense Interval_42835 chr13 20136860 20138194 + 0 NA intron (ENSMUSG00000041112.17, intron 1 of 13) protein_coding-intron (ENSMUSG00000041112.17, intron 1 of 21) -134378 ENSMUSG00000113649.1 ENSMUSG00000113649 ENSMUST00000222367 Gm47665 TEC Interval_163785 chr9 25655415 25656808 + 0 NA Intergenic Intergenic 29252 ENSMUSG00000110857.1 ENSMUSG00000110857 ENSMUST00000215641 Gm48330 processed_pseudogene Interval_147034 chr7 58836674 58837720 + 0 NA exon (ENSMUSG00000086926.2, exon 1 of 1) processed_pseudogene-exon (ENSMUSG00000086926.2, exon 1 of 1) 741 ENSMUSG00000086926.2 ENSMUSG00000086926 ENSMUST00000117765 Gm6226 processed_pseudogene Interval_101672 chr3 8805522 8806574 + 0 NA intron (ENSMUSG00000040269.5, intron 2 of 2) protein_coding-intron (ENSMUSG00000040269.5, intron 2 of 2) -59224 ENSMUSG00000103256.1 ENSMUSG00000103256 ENSMUST00000194556 Gm37647 TEC Interval_169349 chr9 96603299 96604315 + 0 NA intron (ENSMUSG00000032413.12, intron 3 of 19) protein_coding-intron (ENSMUSG00000032413.12, intron 3 of 23) 19504 ENSMUSG00000100522.1 ENSMUSG00000100522 ENSMUST00000190191 Gm19280 processed_pseudogene Interval_137478 chr6 72684526 72685403 + 0 NA intron (ENSMUSG00000055799.13, intron 2 of 5) protein_coding-intron (ENSMUSG00000055799.13, intron 3 of 11) -13560 ENSMUSG00000055799.13 ENSMUSG00000055799 ENSMUST00000182651 Tcf7l1 protein_coding Interval_167933 chr9 74694877 74695242 + 0 NA Intergenic Intergenic -14203 ENSMUSG00000098272.1 ENSMUSG00000098272 ENSMUST00000184030 Gm27233 processed_pseudogene Interval_80152 chr18 37891036 37891275 + 0 NA exon (ENSMUSG00000024456.16, exon 16 of 28) protein_coding-exon (ENSMUSG00000024456.16, exon 16 of 28) 6787 ENSMUSG00000024456.16 ENSMUSG00000024456 ENSMUST00000129688 Diaph1 protein_coding Interval_31841 chr11 103277182 103277445 + 0 NA Intergenic Intergenic -9568 ENSMUSG00000078635.3 ENSMUSG00000078635 ENSMUST00000139621 1700028N14Rik processed_transcript Interval_159012 chr8 88795890 88796273 + 0 NA Intergenic Intergenic -10310 ENSMUSG00000056772.3 ENSMUSG00000056772 ENSMUST00000079841 Rps6-ps2 processed_pseudogene Interval_132782 chr5 147838903 147839945 + 0 NA Intergenic Intergenic 17179 ENSMUSG00000107065.1 ENSMUSG00000107065 ENSMUST00000202661 Gm43155 processed_pseudogene Interval_97267 chr2 132751314 132752123 + 0 NA TTS (ENSMUSG00000044991.10) protein_coding-TTS (ENSMUSG00000044991.10) -29560 ENSMUSG00000027350.8 ENSMUSG00000027350 ENSMUST00000028826 Chgb protein_coding Interval_57356 chr15 9463395 9464071 + 0 NA intron (ENSMUSG00000039676.4, intron 4 of 4) protein_coding-intron (ENSMUSG00000039676.4, intron 4 of 4) -11769 ENSMUSG00000118411.1 ENSMUSG00000118411 ENSMUST00000238688 Gm50456 unprocessed_pseudogene Interval_158624 chr8 84831605 84833146 + 0 NA promoter-TSS (ENSMUSG00000053226.7) protein_coding-promoter-TSS (ENSMUSG00000053226.7) 34 ENSMUSG00000053226.7 ENSMUSG00000053226 ENSMUST00000238279 Dand5 protein_coding Interval_120198 chr4 144156539 144156777 + 0 NA TTS (ENSMUSG00000050810.8) protein_coding-TTS (ENSMUSG00000050810.8) 6005 ENSMUSG00000050810.8 ENSMUSG00000050810 ENSMUST00000050933 Oog3 protein_coding Interval_133114 chr5 149926152 149926344 + 0 NA Intergenic Intergenic 15996 ENSMUSG00000107112.1 ENSMUSG00000107112 ENSMUST00000201713 Gm36241 processed_transcript Interval_89753 chr2 25228307 25228880 + 0 NA TTS (ENSMUSG00000006469.13) protein_coding-TTS (ENSMUSG00000006469.13) -3939 ENSMUSG00000036752.4 ENSMUSG00000036752 ENSMUST00000145607 Tubb4b protein_coding Interval_65049 chr16 18703478 18704393 + 0 NA Intergenic Intergenic -21719 ENSMUSG00000116825.1 ENSMUSG00000116825 ENSMUST00000231787 Rps2-ps7 processed_pseudogene Interval_33331 chr11 115969332 115971437 + 0 NA Intergenic Intergenic -4341 ENSMUSG00000020758.15 ENSMUSG00000020758 ENSMUST00000130286 Itgb4 protein_coding Interval_5820 chr1 92179658 92181178 + 0 NA promoter-TSS (ENSMUSG00000026313.16) protein_coding-promoter-TSS (ENSMUSG00000026313.16) 15276 ENSMUSG00000026313.16 ENSMUSG00000026313 ENSMUST00000212408 Hdac4 protein_coding Interval_120407 chr4 148419681 148420043 + 0 NA Intergenic Intergenic 23623 ENSMUSG00000064648.2 ENSMUSG00000064648 ENSMUST00000082714 Gm23303 snRNA Interval_56696 chr14 121439954 121441286 + 0 NA Intergenic Intergenic 15142 ENSMUSG00000115123.1 ENSMUSG00000115123 ENSMUST00000227451 Gm33299 lincRNA Interval_128886 chr5 115887509 115887737 + 0 NA TTS (ENSMUSG00000029516.19) protein_coding-TTS (ENSMUSG00000029516.19) 1205 ENSMUSG00000029516.19 ENSMUSG00000029516 ENSMUST00000134609 Cit protein_coding Interval_9833 chr1 162805087 162805630 + 0 NA intron (ENSMUSG00000026692.12, intron 2 of 3) protein_coding-intron (ENSMUSG00000026692.12, intron 4 of 8) 3116 ENSMUSG00000026692.12 ENSMUSG00000026692 ENSMUST00000140274 Fmo4 protein_coding Interval_124839 chr5 56210050 56210266 + 0 NA Intergenic Intergenic 52820 ENSMUSG00000105685.1 ENSMUSG00000105685 ENSMUST00000198120 Gm43315 processed_pseudogene Interval_310 chr1 3531483 3531904 + 0 NA promoter-TSS (ENSMUSG00000103147.1) processed_pseudogene-promoter-TSS (ENSMUSG00000103147.1) -102 ENSMUSG00000103147.1 ENSMUSG00000103147 ENSMUST00000192183 Gm7341 processed_pseudogene Interval_58155 chr15 29860690 29861322 + 0 NA Intergenic Intergenic 27468 ENSMUSG00000088621.1 ENSMUSG00000088621 ENSMUST00000157996 Gm23033 snoRNA Interval_37226 chr12 61522572 61524841 + 0 NA promoter-TSS (ENSMUSG00000035653.16) protein_coding-promoter-TSS (ENSMUSG00000035653.16) -1886 ENSMUSG00000113429.1 ENSMUSG00000113429 ENSMUST00000220757 Gm20063 lincRNA Interval_142200 chr6 138238543 138238845 + 0 NA Intergenic Intergenic 98140 ENSMUSG00000008540.11 ENSMUSG00000008540 ENSMUST00000125810 Mgst1 protein_coding Interval_54100 chr14 65278075 65278464 + 0 NA intron (ENSMUSG00000034532.9, intron 2 of 8) protein_coding-intron (ENSMUSG00000034532.9, intron 2 of 6) 11532 ENSMUSG00000034532.9 ENSMUSG00000034532 ENSMUST00000226005 Fbxo16 protein_coding Interval_159055 chr8 89134225 89135180 + 0 NA Intergenic Intergenic 12356 ENSMUSG00000094790.2 ENSMUSG00000094790 ENSMUST00000177870 Gm6625 processed_pseudogene Interval_100098 chr2 167062463 167063559 + 0 NA promoter-TSS (ENSMUSG00000039501.14) protein_coding-promoter-TSS (ENSMUSG00000039501.14) -5 ENSMUSG00000098430.1 ENSMUSG00000098430 ENSMUST00000184735 Gm27494 misc_RNA Interval_8689 chr1 148227531 148228154 + 0 NA Intergenic Intergenic 20536 ENSMUSG00000099629.1 ENSMUSG00000099629 ENSMUST00000188273 Gm29515 lincRNA Interval_12434 chr1 193410830 193411079 + 0 NA Intergenic Intergenic -40729 ENSMUSG00000016179.11 ENSMUSG00000016179 ENSMUST00000165718 Camk1g protein_coding Interval_133778 chr6 12026776 12027006 + 0 NA intron (ENSMUSG00000029629.17, intron 16 of 17) protein_coding-intron (ENSMUSG00000029629.17, intron 16 of 17) -17488 ENSMUSG00000029629.17 ENSMUSG00000029629 ENSMUST00000214543 Phf14 protein_coding Interval_131519 chr5 137690496 137690944 + 0 NA promoter-TSS (ENSMUSG00000079163.3) lincRNA-promoter-TSS (ENSMUSG00000079163.3) 31 ENSMUSG00000079163.3 ENSMUSG00000079163 ENSMUST00000126693 Gm15498 lincRNA Interval_63266 chr15 100009912 100010150 + 0 NA intron (ENSMUSG00000023025.16, intron 14 of 15) protein_coding-intron (ENSMUSG00000023025.16, intron 14 of 15) -36744 ENSMUSG00000100084.2 ENSMUSG00000100084 ENSMUST00000188271 2310068J16Rik antisense Interval_34203 chr11 121266181 121266683 + 0 NA intron (ENSMUSG00000039275.9, intron 1 of 8) protein_coding-intron (ENSMUSG00000039275.9, intron 1 of 8) 21894 ENSMUSG00000000056.7 ENSMUSG00000000056 ENSMUST00000151088 Narf protein_coding Interval_54066 chr14 64960075 64960851 + 0 NA intron (ENSMUSG00000021975.9, intron 1 of 16) protein_coding-intron (ENSMUSG00000021975.9, intron 1 of 16) 10418 ENSMUSG00000021975.9 ENSMUSG00000021975 ENSMUST00000225790 Ints9 protein_coding Interval_93110 chr2 70315757 70316001 + 0 NA intron (ENSMUSG00000042064.13, intron 28 of 33) protein_coding-intron (ENSMUSG00000042064.13, intron 29 of 34) -143103 ENSMUSG00000047965.9 ENSMUSG00000047965 ENSMUST00000140507 Rpl9-ps7 processed_pseudogene Interval_4919 chr1 82586313 82587846 + 0 NA promoter-TSS (ENSMUSG00000067158.9) protein_coding-promoter-TSS (ENSMUSG00000067158.9) -287 ENSMUSG00000067158.9 ENSMUSG00000067158 ENSMUST00000135271 Col4a4 protein_coding Interval_70507 chr17 11211129 11211403 + 0 NA intron (ENSMUSG00000023826.16, intron 3 of 3) protein_coding-intron (ENSMUSG00000023826.16, intron 2 of 6) -38078 ENSMUSG00000103324.1 ENSMUSG00000103324 ENSMUST00000194525 Gm37402 TEC Interval_153476 chr7 145056361 145056720 + 0 NA Intergenic Intergenic -106456 ENSMUSG00000108967.1 ENSMUSG00000108967 ENSMUST00000207878 Gm45181 lincRNA Interval_17489 chr10 77206655 77207347 + 0 NA Intergenic Intergenic 52222 ENSMUSG00000078444.3 ENSMUSG00000078444 ENSMUST00000105408 Gm10941 bidirectional_promoter_lncRNA Interval_84989 chr19 21036953 21038400 + 0 NA Intergenic Intergenic -67034 ENSMUSG00000118047.1 ENSMUSG00000118047 ENSMUST00000237768 4930554I06Rik lincRNA Interval_46064 chr13 60707438 60707684 + 0 NA intron (ENSMUSG00000021559.14, intron 1 of 7) protein_coding-intron (ENSMUSG00000021559.14, intron 3 of 26) -64114 ENSMUSG00000096874.2 ENSMUSG00000096874 ENSMUST00000078515 Gm10312 processed_pseudogene Interval_93438 chr2 73059678 73060569 + 0 NA Intergenic Intergenic -56625 ENSMUSG00000082455.3 ENSMUSG00000082455 ENSMUST00000120830 Gm13665 processed_pseudogene Interval_62951 chr15 98120614 98121902 + 0 NA TTS (ENSMUSG00000033065.14) protein_coding-TTS (ENSMUSG00000033065.14) 27975 ENSMUSG00000097150.1 ENSMUSG00000097150 ENSMUST00000181802 Gm26513 antisense Interval_123122 chr5 29823541 29823968 + 0 NA Intergenic Intergenic 9553 ENSMUSG00000106551.1 ENSMUSG00000106551 ENSMUST00000198125 Gm1969 processed_pseudogene Interval_60259 chr15 70921028 70921349 + 0 NA Intergenic Intergenic 41276 ENSMUSG00000116168.1 ENSMUSG00000116168 ENSMUST00000229766 Gm49430 processed_pseudogene Interval_169971 chr9 103335106 103335312 + 0 NA exon (ENSMUSG00000032555.10, exon 4 of 4) protein_coding-exon (ENSMUSG00000032555.10, exon 4 of 4) -8727 ENSMUSG00000032555.10 ENSMUSG00000032555 ENSMUST00000185972 Topbp1 protein_coding Interval_59324 chr15 51679164 51680147 + 0 NA Intergenic Intergenic -50020 ENSMUSG00000115563.1 ENSMUSG00000115563 ENSMUST00000227000 Gm34562 lincRNA Interval_125152 chr5 64883611 64884218 + 0 NA Intergenic Intergenic 15055 ENSMUSG00000118495.1 ENSMUSG00000118495 ENSMUST00000238830 AC161757.1 processed_pseudogene Interval_159792 chr8 103623377 103624389 + 0 NA TTS (ENSMUSG00000110336.1) lincRNA-TTS (ENSMUSG00000110336.1) 20084 ENSMUSG00000110336.1 ENSMUSG00000110336 ENSMUST00000211119 4933400L20Rik lincRNA Interval_77978 chr18 6307859 6309068 + 0 NA Intergenic Intergenic -24169 ENSMUSG00000073640.3 ENSMUSG00000073640 ENSMUST00000097682 Rpl27-ps3 processed_pseudogene Interval_117012 chr4 119006967 119009154 + 0 NA Intergenic Intergenic -7575 ENSMUSG00000087464.1 ENSMUSG00000087464 ENSMUST00000150754 Gm12862 lincRNA Interval_105943 chr3 90213268 90214208 + 0 NA promoter-TSS (ENSMUSG00000027935.14) protein_coding-promoter-TSS (ENSMUSG00000027935.14) 28 ENSMUSG00000027935.14 ENSMUSG00000027935 ENSMUST00000065418 Rab13 protein_coding Interval_97876 chr2 144690309 144690658 + 0 NA intron (ENSMUSG00000027430.12, intron 2 of 2) protein_coding-intron (ENSMUSG00000027430.12, intron 4 of 5) -65846 ENSMUSG00000084306.1 ENSMUSG00000084306 ENSMUST00000117385 Gm11743 processed_pseudogene Interval_37610 chr12 70292845 70293430 + 0 NA intron (ENSMUSG00000021071.17, intron 1 of 9) protein_coding-intron (ENSMUSG00000021071.17, intron 1 of 11) -36010 ENSMUSG00000021071.17 ENSMUSG00000021071 ENSMUST00000220557 Trim9 protein_coding Interval_1879 chr1 34258318 34258764 + 0 NA intron (ENSMUSG00000026131.20, intron 12 of 22) protein_coding-intron (ENSMUSG00000026131.20, intron 67 of 97) 12587 ENSMUSG00000103001.1 ENSMUSG00000103001 ENSMUST00000194920 A930005N03Rik TEC Interval_59254 chr15 50069943 50070217 + 0 NA Intergenic Intergenic 156698 ENSMUSG00000115446.1 ENSMUSG00000115446 ENSMUST00000227486 Gm49186 processed_pseudogene Interval_74294 chr17 48615851 48617081 + 0 NA Intergenic Intergenic -1357 ENSMUSG00000077708.1 ENSMUSG00000077708 ENSMUST00000104520 Gm24071 snoRNA Interval_132878 chr5 148476729 148477219 + 0 NA Intergenic Intergenic 20136 ENSMUSG00000106956.1 ENSMUSG00000106956 ENSMUST00000202977 Gm19617 unprocessed_pseudogene Interval_59701 chr15 58726974 58727377 + 0 NA Intergenic Intergenic 54776 ENSMUSG00000093677.1 ENSMUSG00000093677 ENSMUST00000176387 Gm20712 sense_overlapping Interval_83312 chr18 84087395 84088544 + 0 NA promoter-TSS (ENSMUSG00000049090.3) protein_coding-promoter-TSS (ENSMUSG00000049090.3) -263 ENSMUSG00000046982.11 ENSMUSG00000046982 ENSMUST00000237918 Tshz1 protein_coding Interval_39763 chr12 97678041 97678548 + 0 NA promoter-TSS (ENSMUSG00000112004.1) processed_pseudogene-promoter-TSS (ENSMUSG00000112004.1) -753 ENSMUSG00000112004.1 ENSMUSG00000112004 ENSMUST00000220259 Gm8785 processed_pseudogene Interval_171020 chr9 113775238 113776294 + 0 NA TTS (ENSMUSG00000087992.1) snoRNA-TTS (ENSMUSG00000087992.1) 532 ENSMUSG00000087992.1 ENSMUSG00000087992 ENSMUST00000157367 Gm25059 snoRNA Interval_74951 chr17 57869880 57870188 + 0 NA intron (ENSMUSG00000038048.8, intron 1 of 23) protein_coding-intron (ENSMUSG00000038048.8, intron 1 of 23) -30813 ENSMUSG00000071052.4 ENSMUSG00000071052 ENSMUST00000095218 Rpl7a-ps5 processed_pseudogene Interval_105597 chr3 87996936 87997692 + 0 NA promoter-TSS (ENSMUSG00000004892.13) protein_coding-promoter-TSS (ENSMUSG00000004892.13) -2859 ENSMUSG00000004892.13 ENSMUSG00000004892 ENSMUST00000194193 Bcan protein_coding Interval_19471 chr10 99758343 99759658 + 0 NA promoter-TSS (ENSMUSG00000112304.1) antisense-promoter-TSS (ENSMUSG00000112304.1) -506 ENSMUSG00000112304.1 ENSMUSG00000112304 ENSMUST00000217945 Gm35206 antisense Interval_127841 chr5 108131913 108133282 + 0 NA promoter-TSS (ENSMUSG00000063406.11) protein_coding-promoter-TSS (ENSMUSG00000063406.11) -67 ENSMUSG00000063406.11 ENSMUSG00000063406 ENSMUST00000119784 Tmed5 protein_coding Interval_128568 chr5 114075926 114076145 + 0 NA intron (ENSMUSG00000042078.14, intron 1 of 6) protein_coding-intron (ENSMUSG00000042078.14, intron 1 of 15) 10521 ENSMUSG00000029592.11 ENSMUSG00000029592 ENSMUST00000198457 Usp30 protein_coding Interval_158260 chr8 80679997 80681725 + 0 NA intron (ENSMUSG00000042353.9, intron 5 of 7) protein_coding-intron (ENSMUSG00000042353.9, intron 5 of 7) 30000 ENSMUSG00000031715.14 ENSMUSG00000031715 ENSMUST00000148455 Smarca5 protein_coding Interval_142548 chr6 143196866 143197367 + 0 NA intron (ENSMUSG00000030275.6, intron 5 of 6) protein_coding-intron (ENSMUSG00000030275.6, intron 5 of 7) 24332 ENSMUSG00000107802.1 ENSMUSG00000107802 ENSMUST00000204351 1700126G02Rik antisense Interval_172448 chrX 20419287 20420472 + 0 NA Intergenic Intergenic -5838 ENSMUSG00000037315.15 ENSMUSG00000037315 ENSMUST00000043693 Jade3 protein_coding Interval_158461 chr8 83860721 83861673 + 0 NA Intergenic Intergenic -39538 ENSMUSG00000013033.16 ENSMUSG00000013033 ENSMUST00000131018 Adgrl1 protein_coding Interval_119570 chr4 138429930 138430136 + 0 NA Intergenic Intergenic 4245 ENSMUSG00000083326.4 ENSMUSG00000083326 ENSMUST00000117723 Rpl38-ps1 processed_pseudogene Interval_74785 chr17 56522048 56522251 + 0 NA Intergenic Intergenic -9718 ENSMUSG00000044526.3 ENSMUSG00000044526 ENSMUST00000052211 Znrf4 protein_coding Interval_95876 chr2 117779979 117780529 + 0 NA Intergenic Intergenic 23410 ENSMUSG00000101394.1 ENSMUSG00000101394 ENSMUST00000191321 Gm28183 lincRNA Interval_172169 chrX 8155243 8157174 + 0 NA intron (ENSMUSG00000039201.10, intron 5 of 5) protein_coding-intron (ENSMUSG00000039201.10, intron 5 of 5) 10291 ENSMUSG00000055188.12 ENSMUSG00000055188 ENSMUST00000133616 Rbm3os antisense Interval_131480 chr5 137485347 137485954 + 0 NA intron (ENSMUSG00000029711.13, intron 1 of 4) protein_coding-intron (ENSMUSG00000029711.13, intron 1 of 4) 166 ENSMUSG00000029711.13 ENSMUSG00000029711 ENSMUST00000111039 Epo protein_coding Interval_32375 chr11 107214929 107215693 + 0 NA intron (ENSMUSG00000040430.18, intron 7 of 7) protein_coding-intron (ENSMUSG00000040430.18, intron 7 of 7) 24217 ENSMUSG00000081360.1 ENSMUSG00000081360 ENSMUST00000119942 Gm11718 processed_pseudogene Interval_113345 chr4 53631035 53632098 + 0 NA promoter-TSS (ENSMUSG00000054752.16) protein_coding-promoter-TSS (ENSMUSG00000054752.16) -11714 ENSMUSG00000054752.16 ENSMUSG00000054752 ENSMUST00000180164 Fsd1l protein_coding Interval_137236 chr6 70596572 70596744 + 0 NA Intergenic Intergenic 7783 ENSMUSG00000104760.1 ENSMUSG00000104760 ENSMUST00000197635 Igkv3-8 IG_V_pseudogene Interval_88764 chr2 10381440 10381799 + 0 NA intron (ENSMUSG00000061186.15, intron 3 of 3) protein_coding-intron (ENSMUSG00000061186.15, intron 2 of 22) -7578 ENSMUSG00000086748.1 ENSMUSG00000086748 ENSMUST00000137351 Gm13261 processed_transcript Interval_72977 chr17 33915334 33916601 + 0 NA promoter-TSS (ENSMUSG00000051390.10) protein_coding-promoter-TSS (ENSMUSG00000051390.10) 63 ENSMUSG00000051390.10 ENSMUSG00000051390 ENSMUST00000053429 Zbtb22 protein_coding Interval_37375 chr12 65915150 65915447 + 0 NA Intergenic Intergenic -53078 ENSMUSG00000113785.1 ENSMUSG00000113785 ENSMUST00000222655 Gm47975 TEC Interval_7665 chr1 132917901 132919445 + 0 NA intron (ENSMUSG00000026443.3, intron 1 of 1) protein_coding-intron (ENSMUSG00000026443.3, intron 1 of 1) 5071 ENSMUSG00000106377.1 ENSMUSG00000106377 ENSMUST00000196792 Gm44300 miRNA Interval_91801 chr2 49717483 49718545 + 0 NA intron (ENSMUSG00000026764.15, intron 3 of 6) protein_coding-intron (ENSMUSG00000026764.15, intron 11 of 25) -14597 ENSMUSG00000026764.15 ENSMUSG00000026764 ENSMUST00000132968 Kif5c protein_coding Interval_170574 chr9 108956776 108957684 + 0 NA exon (ENSMUSG00000025650.13, exon 12 of 118) protein_coding-exon (ENSMUSG00000025650.13, exon 12 of 118) -6689 ENSMUSG00000103754.1 ENSMUSG00000103754 ENSMUST00000193607 Gm37284 TEC Interval_115419 chr4 98789967 98790852 + 0 NA intron (ENSMUSG00000035407.8, intron 1 of 9) protein_coding-intron (ENSMUSG00000035407.8, intron 1 of 9) -3359 ENSMUSG00000085843.1 ENSMUSG00000085843 ENSMUST00000133455 Kank4os antisense Interval_41436 chr12 113906211 113906629 + 0 NA Intergenic Intergenic 6063 ENSMUSG00000076653.4 ENSMUSG00000076653 ENSMUST00000103462 Ighv7-2 IG_V_gene Interval_42035 chr13 6663751 6664744 + 0 NA Intergenic Intergenic -1353 ENSMUSG00000068324.5 ENSMUSG00000068324 ENSMUST00000089635 Gm10029 processed_pseudogene Interval_156428 chr8 48097160 48097772 + 0 NA Intergenic Intergenic -12696 ENSMUSG00000031562.15 ENSMUSG00000031562 ENSMUST00000174379 Dctd protein_coding Interval_58388 chr15 34072999 34074044 + 0 NA Intergenic Intergenic 20403 ENSMUSG00000115440.1 ENSMUSG00000115440 ENSMUST00000227515 Gm49091 processed_pseudogene Interval_111983 chr4 32956373 32957019 + 0 NA Intergenic Intergenic -8192 ENSMUSG00000094344.1 ENSMUSG00000094344 ENSMUST00000180255 Gm11942 processed_pseudogene Interval_37491 chr12 69342192 69343230 + 0 NA promoter-TSS (ENSMUSG00000020982.9) protein_coding-promoter-TSS (ENSMUSG00000020982.9) 14427 ENSMUSG00000020982.9 ENSMUSG00000020982 ENSMUST00000222065 Nemf protein_coding Interval_99723 chr2 164510482 164511262 + 0 NA Intergenic Intergenic 13311 ENSMUSG00000017721.15 ENSMUSG00000017721 ENSMUST00000131976 Pigt protein_coding Interval_95554 chr2 112223973 112224840 + 0 NA Intergenic Intergenic -17079 ENSMUSG00000027134.4 ENSMUSG00000027134 ENSMUST00000129503 Lpcat4 protein_coding Interval_160705 chr8 111716936 111718216 + 0 NA intron (ENSMUSG00000031955.10, intron 2 of 6) protein_coding-intron (ENSMUSG00000031955.10, intron 2 of 6) 14560 ENSMUSG00000031955.10 ENSMUSG00000031955 ENSMUST00000212147 Bcar1 protein_coding Interval_110706 chr4 6679396 6680069 + 0 NA Intergenic Intergenic -8437 ENSMUSG00000086052.1 ENSMUSG00000086052 ENSMUST00000137749 Gm11802 antisense Interval_107596 chr3 108792263 108792948 + 0 NA TTS (ENSMUSG00000027882.18) protein_coding-TTS (ENSMUSG00000027882.18) 40079 ENSMUSG00000049565.16 ENSMUSG00000049565 ENSMUST00000147916 Aknad1 protein_coding Interval_143542 chr7 12387406 12387916 + 0 NA Intergenic Intergenic 5222 ENSMUSG00000092331.1 ENSMUSG00000092331 ENSMUST00000173436 Vmn1r-ps66 unprocessed_pseudogene Interval_123194 chr5 30519892 30520431 + 0 NA intron (ENSMUSG00000053194.2, intron 3 of 6) protein_coding-intron (ENSMUSG00000053194.2, intron 3 of 6) -5477 ENSMUSG00000088327.1 ENSMUSG00000088327 ENSMUST00000157702 Gm25666 snRNA Interval_149872 chr7 102132244 102133133 + 0 NA exon (ENSMUSG00000063550.8, exon 24 of 33) protein_coding-exon (ENSMUSG00000063550.8, exon 24 of 33) -15860 ENSMUSG00000066279.3 ENSMUSG00000066279 ENSMUST00000211408 Chrna10 protein_coding Interval_114949 chr4 87497005 87497399 + 0 NA Intergenic Intergenic 64930 ENSMUSG00000093065.1 ENSMUSG00000093065 ENSMUST00000175324 Gm23154 miRNA Interval_164085 chr9 31385411 31386762 + 0 NA promoter-TSS (ENSMUSG00000042185.14) protein_coding-promoter-TSS (ENSMUSG00000042185.14) -10065 ENSMUSG00000042185.14 ENSMUSG00000042185 ENSMUST00000143558 Nfrkb protein_coding Interval_113124 chr4 48490672 48492076 + 0 NA Intergenic Intergenic -17952 ENSMUSG00000028345.15 ENSMUSG00000028345 ENSMUST00000132911 Tex10 protein_coding Interval_95001 chr2 102888504 102889545 + 0 NA intron (ENSMUSG00000005087.17, intron 1 of 4) protein_coding-intron (ENSMUSG00000005087.17, intron 1 of 18) -8936 ENSMUSG00000065683.1 ENSMUSG00000065683 ENSMUST00000083749 Gm23731 snRNA Interval_128768 chr5 115157730 115158994 + 0 NA promoter-TSS (ENSMUSG00000048578.11) protein_coding-promoter-TSS (ENSMUSG00000048578.11) -7316 ENSMUSG00000048578.11 ENSMUSG00000048578 ENSMUST00000124678 Mlec protein_coding Interval_118833 chr4 133941851 133942158 + 0 NA Intergenic Intergenic 25887 ENSMUSG00000003038.15 ENSMUSG00000003038 ENSMUST00000136859 Hmgn2 protein_coding Interval_58144 chr15 29024622 29024932 + 0 NA Intergenic Intergenic 169773 ENSMUSG00000115459.1 ENSMUSG00000115459 ENSMUST00000226719 Gm49280 TEC Interval_66290 chr16 32924402 32924679 + 0 NA TTS (ENSMUSG00000091997.1) processed_pseudogene-TTS (ENSMUSG00000091997.1) 1322 ENSMUSG00000091997.1 ENSMUSG00000091997 ENSMUST00000163830 Gm6611 processed_pseudogene Interval_9073 chr1 153424343 153425638 + 0 NA promoter-TSS (ENSMUSG00000042708.12) protein_coding-promoter-TSS (ENSMUSG00000042708.12) -10757 ENSMUSG00000073538.10 ENSMUSG00000073538 ENSMUST00000188717 E330020D12Rik processed_transcript Interval_142376 chr6 141136899 141138169 + 0 NA promoter-TSS (ENSMUSG00000107462.1) processed_pseudogene-promoter-TSS (ENSMUSG00000107462.1) -513 ENSMUSG00000107462.1 ENSMUSG00000107462 ENSMUST00000203682 Gm7384 processed_pseudogene Interval_123954 chr5 36848488 36848818 + 0 NA Intergenic Intergenic -20010 ENSMUSG00000029120.10 ENSMUSG00000029120 ENSMUST00000138124 Ppp2r2c protein_coding Interval_96188 chr2 120381521 120382393 + 0 NA exon (ENSMUSG00000033808.16, exon 7 of 7) protein_coding-exon (ENSMUSG00000033808.16, exon 7 of 7) 22156 ENSMUSG00000033808.16 ENSMUSG00000033808 ENSMUST00000143182 Tmem87a protein_coding Interval_126188 chr5 81676461 81677326 + 0 NA intron (ENSMUSG00000037605.16, intron 12 of 12) protein_coding-intron (ENSMUSG00000037605.16, intron 11 of 24) -59034 ENSMUSG00000106611.1 ENSMUSG00000106611 ENSMUST00000104721 Gm22048 miRNA Interval_45090 chr13 52046726 52047028 + 0 NA Intergenic Intergenic -24950 ENSMUSG00000102173.1 ENSMUSG00000102173 ENSMUST00000192362 Gm37872 TEC Interval_65326 chr16 21577457 21578014 + 0 NA intron (ENSMUSG00000033653.18, intron 5 of 5) protein_coding-intron (ENSMUSG00000033653.18, intron 43 of 43) 44623 ENSMUSG00000033653.18 ENSMUSG00000033653 ENSMUST00000127903 Vps8 protein_coding Interval_116297 chr4 109430456 109431704 + 0 NA intron (ENSMUSG00000028555.15, intron 9 of 17) protein_coding-intron (ENSMUSG00000028555.15, intron 9 of 17) 16304 ENSMUSG00000028555.15 ENSMUSG00000028555 ENSMUST00000139237 Ttc39a protein_coding Interval_18816 chr10 91110034 91110317 + 0 NA Intergenic Intergenic 8361 ENSMUSG00000077167.1 ENSMUSG00000077167 ENSMUST00000103979 Gm24119 snoRNA Interval_136148 chr6 51509227 51511583 + 0 NA Intergenic Intergenic 32947 ENSMUSG00000029836.15 ENSMUSG00000029836 ENSMUST00000203404 Cbx3 protein_coding Interval_58898 chr15 39823959 39824499 + 0 NA exon (ENSMUSG00000022304.13, exon 7 of 10) protein_coding-exon (ENSMUSG00000022304.13, exon 7 of 10) 27184 ENSMUSG00000087695.1 ENSMUSG00000087695 ENSMUST00000147378 Gm16291 antisense Interval_46306 chr13 63572448 63574185 + 0 NA exon (ENSMUSG00000021466.12, exon 1 of 24) protein_coding-exon (ENSMUSG00000021466.12, exon 1 of 24) -4494 ENSMUSG00000113459.1 ENSMUSG00000113459 ENSMUST00000222732 Gm30655 lincRNA Interval_33487 chr11 116837398 116837691 + 0 NA TTS (ENSMUSG00000056962.11) protein_coding-TTS (ENSMUSG00000056962.11) 2422 ENSMUSG00000098792.1 ENSMUSG00000098792 ENSMUST00000184052 Gm27401 misc_RNA Interval_120286 chr4 145196698 145197004 + 0 NA Intergenic Intergenic -41365 ENSMUSG00000020220.16 ENSMUSG00000020220 ENSMUST00000132700 Vps13d protein_coding Interval_115893 chr4 105929119 105929376 + 0 NA Intergenic Intergenic 46638 ENSMUSG00000089065.1 ENSMUSG00000089065 ENSMUST00000158440 Gm24363 misc_RNA Interval_119769 chr4 139837431 139837799 + 0 NA Intergenic Intergenic -4608 ENSMUSG00000028736.13 ENSMUSG00000028736 ENSMUST00000174681 Pax7 protein_coding Interval_6740 chr1 119093667 119094022 + 0 NA Intergenic Intergenic 35375 ENSMUSG00000097408.1 ENSMUSG00000097408 ENSMUST00000181458 Gm26831 lincRNA Interval_64270 chr16 10078362 10078817 + 0 NA Intergenic Intergenic -32624 ENSMUSG00000098170.1 ENSMUSG00000098170 ENSMUST00000182416 Gm3890 processed_pseudogene Interval_69134 chr16 90860222 90861288 + 0 NA intron (ENSMUSG00000039903.18, intron 1 of 4) protein_coding-intron (ENSMUSG00000039903.18, intron 1 of 7) -9792 ENSMUSG00000116543.1 ENSMUSG00000116543 ENSMUST00000232254 Gm36363 antisense Interval_170216 chr9 106250060 106250951 + 0 NA Intergenic Intergenic 2545 ENSMUSG00000097592.2 ENSMUSG00000097592 ENSMUST00000180701 4930500F10Rik antisense Interval_145144 chr7 30291241 30292211 + 0 NA promoter-TSS (ENSMUSG00000013921.15) protein_coding-promoter-TSS (ENSMUSG00000013921.15) -3 ENSMUSG00000013921.15 ENSMUSG00000013921 ENSMUST00000132844 Clip3 protein_coding Interval_169723 chr9 100693576 100693973 + 0 NA intron (ENSMUSG00000037286.15, intron 2 of 6) protein_coding-intron (ENSMUSG00000037286.15, intron 1 of 32) -9439 ENSMUSG00000104272.1 ENSMUSG00000104272 ENSMUST00000195122 Gm38297 TEC Interval_172250 chrX 11926833 11927676 + 0 NA Intergenic Intergenic -13965 ENSMUSG00000083439.1 ENSMUSG00000083439 ENSMUST00000121919 Gm14491 processed_pseudogene Interval_137586 chr6 73773247 73773630 + 0 NA Intergenic Intergenic 112411 ENSMUSG00000107646.1 ENSMUSG00000107646 ENSMUST00000203582 Gm44225 processed_pseudogene Interval_62849 chr15 97404013 97405193 + 0 NA Intergenic Intergenic 43401 ENSMUSG00000044250.8 ENSMUSG00000044250 ENSMUST00000226495 Pced1b protein_coding Interval_9418 chr1 156944972 156945177 + 0 NA Intergenic Intergenic 5236 ENSMUSG00000101905.1 ENSMUSG00000101905 ENSMUST00000186765 4930439D14Rik antisense Interval_136029 chr6 50109436 50110967 + 0 NA promoter-TSS (ENSMUSG00000038388.14) protein_coding-promoter-TSS (ENSMUSG00000038388.14) -77 ENSMUSG00000038388.14 ENSMUSG00000038388 ENSMUST00000167319 Mpp6 protein_coding Interval_157289 chr8 69027346 69029190 + 0 NA Intergenic Intergenic -16486 ENSMUSG00000089995.2 ENSMUSG00000089995 ENSMUST00000162457 Gm15716 antisense Interval_20166 chr10 115358795 115359294 + 0 NA TTS (ENSMUSG00000069520.6) protein_coding-TTS (ENSMUSG00000069520.6) 3449 ENSMUSG00000069520.6 ENSMUSG00000069520 ENSMUST00000219597 Tmem19 protein_coding Interval_52127 chr14 36914648 36914964 + 0 NA intron (ENSMUSG00000058690.14, intron 3 of 7) protein_coding-intron (ENSMUSG00000058690.14, intron 5 of 9) -5625 ENSMUSG00000058690.14 ENSMUSG00000058690 ENSMUST00000182635 Ccser2 protein_coding Interval_788 chr1 11233856 11234084 + 0 NA intron (ENSMUSG00000048960.13, intron 35 of 39) protein_coding-intron (ENSMUSG00000048960.13, intron 35 of 39) -9796 ENSMUSG00000101827.1 ENSMUSG00000101827 ENSMUST00000187404 Gm28686 processed_pseudogene Interval_132061 chr5 142550233 142551447 + 0 NA intron (ENSMUSG00000029576.17, intron 1 of 13) protein_coding-intron (ENSMUSG00000029576.17, intron 1 of 14) -5604 ENSMUSG00000105213.1 ENSMUSG00000105213 ENSMUST00000196808 Gm43037 unprocessed_pseudogene Interval_114251 chr4 70086964 70087663 + 0 NA Intergenic Intergenic 40156 ENSMUSG00000082368.1 ENSMUSG00000082368 ENSMUST00000118903 Gm11225 processed_pseudogene Interval_169169 chr9 94955767 94955978 + 0 NA intron (ENSMUSG00000031129.9, intron 8 of 15) protein_coding-intron (ENSMUSG00000031129.9, intron 8 of 15) 36812 ENSMUSG00000111087.1 ENSMUSG00000111087 ENSMUST00000214362 Gm47168 processed_pseudogene Interval_128398 chr5 113115830 113116394 + 0 NA intron (ENSMUSG00000051339.10, intron 6 of 12) protein_coding-intron (ENSMUSG00000051339.10, intron 1 of 7) 3352 ENSMUSG00000104576.1 ENSMUSG00000104576 ENSMUST00000197638 F830115B05Rik TEC Interval_87880 chr19 56821566 56823102 + 0 NA promoter-TSS (ENSMUSG00000035173.14) protein_coding-promoter-TSS (ENSMUSG00000035173.14) -3952 ENSMUSG00000025081.13 ENSMUSG00000025081 ENSMUST00000111604 Tdrd1 protein_coding Interval_158009 chr8 77970032 77971083 + 0 NA Intergenic Intergenic -73453 ENSMUSG00000110382.1 ENSMUSG00000110382 ENSMUST00000209933 Gm29895 lincRNA Interval_94049 chr2 82596709 82597391 + 0 NA Intergenic Intergenic -26163 ENSMUSG00000081122.1 ENSMUSG00000081122 ENSMUST00000118926 Gm13678 processed_pseudogene Interval_99924 chr2 165838448 165838839 + 0 NA intron (ENSMUSG00000039671.18, intron 7 of 22) protein_coding-intron (ENSMUSG00000039671.18, intron 8 of 23) -19041 ENSMUSG00000085274.1 ENSMUSG00000085274 ENSMUST00000155786 BC046401 processed_transcript Interval_116729 chr4 116960367 116960722 + 0 NA intron (ENSMUSG00000033948.3, intron 3 of 13) protein_coding-intron (ENSMUSG00000033948.3, intron 3 of 13) -14010 ENSMUSG00000082207.1 ENSMUSG00000082207 ENSMUST00000122445 Gm12998 processed_pseudogene Interval_167928 chr9 74461184 74461504 + 0 NA Intergenic Intergenic -96281 ENSMUSG00000098313.1 ENSMUSG00000098313 ENSMUST00000183844 Nr1h2-ps processed_pseudogene Interval_149988 chr7 104234987 104235490 + 0 NA TTS (ENSMUSG00000072244.11) protein_coding-TTS (ENSMUSG00000072244.11) -9219 ENSMUSG00000056144.14 ENSMUSG00000056144 ENSMUST00000106848 Trim34a protein_coding Interval_56669 chr14 121284092 121284538 + 0 NA TTS (ENSMUSG00000025555.14) protein_coding-TTS (ENSMUSG00000025555.14) 35609 ENSMUSG00000085133.2 ENSMUSG00000085133 ENSMUST00000130256 B930095G15Rik sense_intronic Interval_67632 chr16 54577213 54577522 + 0 NA Intergenic Intergenic 5830 ENSMUSG00000116662.1 ENSMUSG00000116662 ENSMUST00000232022 Gm46541 processed_pseudogene Interval_127193 chr5 101005220 101005823 + 0 NA Intergenic Intergenic -91814 ENSMUSG00000106255.1 ENSMUSG00000106255 ENSMUST00000199211 Gm36793 lincRNA Interval_147380 chr7 66282894 66283910 + 0 NA intron (ENSMUSG00000015133.17, intron 21 of 33) protein_coding-intron (ENSMUSG00000015133.17, intron 21 of 33) -20932 ENSMUSG00000015133.17 ENSMUSG00000015133 ENSMUST00000154893 Lrrk1 protein_coding Interval_43020 chr13 23176576 23177233 + 0 NA Intergenic Intergenic 11071 ENSMUSG00000096099.2 ENSMUSG00000096099 ENSMUST00000072385 Vmn1r220 protein_coding Interval_93741 chr2 76399750 76400780 + 0 NA Intergenic Intergenic 30281 ENSMUSG00000042369.8 ENSMUSG00000042369 ENSMUST00000046389 Rbm45 protein_coding Interval_69030 chr16 90217946 90218244 + 0 NA Intergenic Intergenic -2659 ENSMUSG00000022982.10 ENSMUSG00000022982 ENSMUST00000232505 Sod1 protein_coding Interval_143307 chr7 5060271 5062803 + 0 NA promoter-TSS (ENSMUSG00000030435.16) protein_coding-promoter-TSS (ENSMUSG00000030435.16) 512 ENSMUSG00000109274.1 ENSMUSG00000109274 ENSMUST00000207548 Gm45133 TEC Interval_84428 chr19 10835460 10836525 + 0 NA Intergenic Intergenic -3735 ENSMUSG00000024737.2 ENSMUSG00000024737 ENSMUST00000138263 Slc15a3 protein_coding Interval_37389 chr12 66329199 66329794 + 0 NA Intergenic Intergenic 38889 ENSMUSG00000114093.1 ENSMUSG00000114093 ENSMUST00000221562 Gm47979 lincRNA Interval_117065 chr4 119307483 119308262 + 0 NA exon (ENSMUSG00000060288.13, exon 10 of 10) protein_coding-exon (ENSMUSG00000060288.13, exon 10 of 10) -12411 ENSMUSG00000102819.1 ENSMUSG00000102819 ENSMUST00000195276 Gm37817 TEC Interval_24100 chr11 30237951 30238386 + 0 NA intron (ENSMUSG00000020315.18, intron 1 of 1) protein_coding-intron (ENSMUSG00000020315.18, intron 1 of 35) -29296 ENSMUSG00000073073.4 ENSMUSG00000073073 ENSMUST00000146985 Gm8098 processed_transcript Interval_79555 chr18 33748234 33748457 + 0 NA Intergenic Intergenic -46594 ENSMUSG00000087590.2 ENSMUSG00000087590 ENSMUST00000179138 Epb41l4aos lincRNA Interval_27506 chr11 68285953 68287857 + 0 NA intron (ENSMUSG00000020902.12, intron 3 of 7) protein_coding-intron (ENSMUSG00000020902.12, intron 2 of 6) -16026 ENSMUSG00000084993.1 ENSMUSG00000084993 ENSMUST00000151817 Gm12305 sense_intronic Interval_29498 chr11 84462295 84462670 + 0 NA intron (ENSMUSG00000018697.14, intron 5 of 8) protein_coding-intron (ENSMUSG00000018697.14, intron 9 of 12) 51040 ENSMUSG00000018697.14 ENSMUSG00000018697 ENSMUST00000148434 Aatf protein_coding Interval_122301 chr5 21043904 21044935 + 0 NA intron (ENSMUSG00000028771.13, intron 1 of 17) protein_coding-intron (ENSMUSG00000028771.13, intron 1 of 17) 11478 ENSMUSG00000028771.13 ENSMUSG00000028771 ENSMUST00000140057 Ptpn12 protein_coding Interval_152234 chr7 130812176 130813259 + 0 NA intron (ENSMUSG00000040298.6, intron 10 of 15) protein_coding-intron (ENSMUSG00000040298.6, intron 10 of 15) 38550 ENSMUSG00000040298.6 ENSMUSG00000040298 ENSMUST00000208593 Btbd16 protein_coding Interval_127444 chr5 103982773 103983018 + 0 NA Intergenic Intergenic -5569 ENSMUSG00000034528.15 ENSMUSG00000034528 ENSMUST00000112803 Hsd17b13 protein_coding Interval_4207 chr1 71623062 71624155 + 0 NA intron (ENSMUSG00000026193.15, intron 20 of 43) protein_coding-intron (ENSMUSG00000026193.15, intron 20 of 45) -29280 ENSMUSG00000073652.10 ENSMUSG00000073652 ENSMUST00000125934 Apol7d antisense Interval_129277 chr5 118612796 118614119 + 0 NA intron (ENSMUSG00000018076.12, intron 2 of 4) protein_coding-intron (ENSMUSG00000018076.12, intron 2 of 30) -4837 ENSMUSG00000106798.1 ENSMUSG00000106798 ENSMUST00000202053 Gm43275 TEC Interval_42040 chr13 6702993 6703420 + 0 NA Intergenic Intergenic 30067 ENSMUSG00000113545.1 ENSMUSG00000113545 ENSMUST00000223351 Gm48238 processed_pseudogene Interval_54786 chr14 75050723 75051081 + 0 NA intron (ENSMUSG00000034959.8, intron 8 of 8) protein_coding-intron (ENSMUSG00000034959.8, intron 13 of 13) 14280 ENSMUSG00000034959.8 ENSMUSG00000034959 ENSMUST00000228689 Rubcnl protein_coding Interval_148086 chr7 79139134 79141213 + 0 NA intron (ENSMUSG00000030605.15, intron 3 of 5) protein_coding-intron (ENSMUSG00000030605.15, intron 7 of 9) 8058 ENSMUSG00000030605.15 ENSMUSG00000030605 ENSMUST00000206844 Mfge8 protein_coding Interval_47173 chr13 77080021 77080239 + 0 NA intron (ENSMUSG00000021597.16, intron 14 of 20) protein_coding-intron (ENSMUSG00000021597.16, intron 14 of 20) 55335 ENSMUSG00000021597.16 ENSMUSG00000021597 ENSMUST00000162320 Slf1 protein_coding Interval_7453 chr1 131478836 131479374 + 0 NA intron (ENSMUSG00000026425.15, intron 2 of 4) protein_coding-intron (ENSMUSG00000026425.15, intron 2 of 22) 19697 ENSMUSG00000076287.1 ENSMUSG00000076287 ENSMUST00000102332 Gm24273 miRNA Interval_140775 chr6 121210544 121211829 + 0 NA intron (ENSMUSG00000030137.8, intron 1 of 4) protein_coding-intron (ENSMUSG00000030137.8, intron 1 of 4) 490 ENSMUSG00000030137.8 ENSMUSG00000030137 ENSMUST00000032233 Tuba8 protein_coding Interval_71340 chr17 22410089 22411186 + 0 NA Intergenic Intergenic -40486 ENSMUSG00000071266.13 ENSMUSG00000071266 ENSMUST00000167740 Zfp946 protein_coding Interval_40869 chr12 108994539 108995191 + 0 NA intron (ENSMUSG00000040877.16, intron 4 of 6) protein_coding-intron (ENSMUSG00000040877.16, intron 5 of 7) -3214 ENSMUSG00000113478.1 ENSMUSG00000113478 ENSMUST00000220743 Gm18405 processed_pseudogene Interval_115453 chr4 99068920 99069402 + 0 NA intron (ENSMUSG00000028556.15, intron 9 of 47) protein_coding-intron (ENSMUSG00000028556.15, intron 9 of 48) -2050 ENSMUSG00000028556.15 ENSMUSG00000028556 ENSMUST00000206604 Dock7 protein_coding Interval_106697 chr3 99154964 99155519 + 0 NA intron (ENSMUSG00000004233.14, intron 1 of 3) protein_coding-intron (ENSMUSG00000004233.14, intron 1 of 5) 10638 ENSMUSG00000105472.1 ENSMUSG00000105472 ENSMUST00000196770 Gm43024 sense_intronic Interval_130426 chr5 127522584 127523447 + 0 NA intron (ENSMUSG00000034324.16, intron 4 of 8) protein_coding-intron (ENSMUSG00000034324.16, intron 4 of 8) -30239 ENSMUSG00000034324.16 ENSMUSG00000034324 ENSMUST00000145748 Tmem132c protein_coding Interval_56858 chr14 122473645 122476417 + 0 NA promoter-TSS (ENSMUSG00000061524.8) protein_coding-promoter-TSS (ENSMUSG00000061524.8) 168 ENSMUSG00000085555.9 ENSMUSG00000085555 ENSMUST00000177306 2610035F20Rik processed_transcript Interval_160627 chr8 111157309 111158122 + 0 NA TTS (ENSMUSG00000003316.14) protein_coding-TTS (ENSMUSG00000003316.14) -12235 ENSMUSG00000084808.7 ENSMUSG00000084808 ENSMUST00000143719 9430091E24Rik processed_transcript Interval_14654 chr10 38047377 38047706 + 0 NA Intergenic Intergenic 74520 ENSMUSG00000111488.1 ENSMUSG00000111488 ENSMUST00000213538 Gm31378 lincRNA Interval_40075 chr12 101014589 101015040 + 0 NA TTS (ENSMUSG00000113634.1) antisense-TTS (ENSMUSG00000113634.1) 6954 ENSMUSG00000080575.2 ENSMUSG00000080575 ENSMUST00000116925 Mir1190 miRNA Interval_18057 chr10 81580429 81580996 + 0 NA promoter-TSS (ENSMUSG00000034771.15) protein_coding-promoter-TSS (ENSMUSG00000034771.15) -4772 ENSMUSG00000090034.1 ENSMUSG00000090034 ENSMUST00000162771 Gm15917 antisense Interval_37981 chr12 73564921 73566095 + 0 NA Intergenic Intergenic 17030 ENSMUSG00000113800.1 ENSMUSG00000113800 ENSMUST00000222490 2210039B01Rik lincRNA Interval_167949 chr9 74870934 74871133 + 0 NA intron (ENSMUSG00000043013.10, intron 1 of 1) protein_coding-intron (ENSMUSG00000043013.10, intron 1 of 1) 4549 ENSMUSG00000043013.10 ENSMUSG00000043013 ENSMUST00000160499 Onecut1 protein_coding Interval_125948 chr5 76146374 76146801 + 0 NA promoter-TSS (ENSMUSG00000029233.15) protein_coding-promoter-TSS (ENSMUSG00000029233.15) 5887 ENSMUSG00000029233.15 ENSMUSG00000029233 ENSMUST00000124217 Srd5a3 protein_coding Interval_54799 chr14 75200198 75200544 + 0 NA TTS (ENSMUSG00000021998.16) protein_coding-TTS (ENSMUSG00000021998.16) -1100 ENSMUSG00000090054.1 ENSMUSG00000090054 ENSMUST00000161819 Gm15629 antisense Interval_107568 chr3 108527983 108528724 + 0 NA intron (ENSMUSG00000040412.17, intron 1 of 1) protein_coding-intron (ENSMUSG00000040412.17, intron 1 of 20) -5797 ENSMUSG00000027886.7 ENSMUSG00000027886 ENSMUST00000029485 1700013F07Rik protein_coding Interval_42440 chr13 13568274 13568728 + 0 NA Intergenic Intergenic 53763 ENSMUSG00000114068.1 ENSMUSG00000114068 ENSMUST00000221249 Gm48783 TEC Interval_131597 chr5 138594442 138594847 + 0 NA Intergenic Intergenic -12055 ENSMUSG00000092916.1 ENSMUSG00000092916 ENSMUST00000175175 Gm24082 miRNA Interval_111130 chr4 12560249 12560764 + 0 NA Intergenic Intergenic -36882 ENSMUSG00000104211.1 ENSMUSG00000104211 ENSMUST00000194728 Gm37985 TEC Interval_106091 chr3 92920105 92920949 + 0 NA Intergenic Intergenic 5703 ENSMUSG00000054325.5 ENSMUSG00000054325 ENSMUST00000067318 Lce3a protein_coding Interval_2381 chr1 38847967 38848323 + 0 NA Intergenic Intergenic -11771 ENSMUSG00000048814.11 ENSMUSG00000048814 ENSMUST00000191724 Lonrf2 protein_coding Interval_4932 chr1 82770626 82771546 + 0 NA exon (ENSMUSG00000114299.1, exon 1 of 1) protein_coding-exon (ENSMUSG00000114299.1, exon 1 of 1) 157 ENSMUSG00000114299.1 ENSMUSG00000114299 ENSMUST00000223838 Gm47791 protein_coding Interval_99010 chr2 156652767 156653340 + 0 NA intron (ENSMUSG00000061689.15, intron 1 of 12) protein_coding-intron (ENSMUSG00000061689.15, intron 1 of 12) -19585 ENSMUSG00000083498.1 ENSMUSG00000083498 ENSMUST00000118255 Gm14172 processed_pseudogene Interval_118325 chr4 130304692 130305101 + 0 NA Intergenic Intergenic -3699 ENSMUSG00000028773.8 ENSMUSG00000028773 ENSMUST00000070532 Fabp3 protein_coding Interval_129731 chr5 122005907 122006488 + 0 NA intron (ENSMUSG00000042589.18, intron 1 of 6) protein_coding-intron (ENSMUSG00000042589.18, intron 2 of 22) -19133 ENSMUSG00000105795.1 ENSMUSG00000105795 ENSMUST00000198001 Gm3970 antisense Interval_167688 chr9 71974650 71975014 + 0 NA intron (ENSMUSG00000032228.16, intron 1 of 8) protein_coding-intron (ENSMUSG00000032228.16, intron 5 of 19) 16439 ENSMUSG00000104469.1 ENSMUSG00000104469 ENSMUST00000191887 Gm37663 TEC Interval_20970 chr10 122883697 122884759 + 0 NA intron (ENSMUSG00000034613.12, intron 6 of 8) protein_coding-intron (ENSMUSG00000034613.12, intron 6 of 9) -11140 ENSMUSG00000034613.12 ENSMUSG00000034613 ENSMUST00000162969 Ppm1h protein_coding Interval_167252 chr9 66691565 66692119 + 0 NA Intergenic Intergenic -21887 ENSMUSG00000032373.15 ENSMUSG00000032373 ENSMUST00000134829 Car12 protein_coding Interval_28548 chr11 76655238 76656017 + 0 NA Intergenic Intergenic -16843 ENSMUSG00000044243.3 ENSMUSG00000044243 ENSMUST00000056184 Bhlha9 protein_coding Interval_133780 chr6 12091832 12092174 + 0 NA Intergenic Intergenic 8266 ENSMUSG00000057223.6 ENSMUSG00000057223 ENSMUST00000203684 Gm6578 transcribed_processed_pseudogene Interval_110695 chr4 6539417 6539614 + 0 NA promoter-TSS (ENSMUSG00000081388.1) processed_pseudogene-promoter-TSS (ENSMUSG00000081388.1) -46 ENSMUSG00000081388.1 ENSMUSG00000081388 ENSMUST00000117807 Gm11801 processed_pseudogene Interval_37325 chr12 65129030 65129879 + 0 NA intron (ENSMUSG00000055884.8, intron 22 of 22) protein_coding-intron (ENSMUSG00000055884.8, intron 22 of 22) -29448 ENSMUSG00000112992.1 ENSMUSG00000112992 ENSMUST00000223249 Gm47869 processed_pseudogene Interval_29670 chr11 85926503 85926937 + 0 NA Intergenic Intergenic -23775 ENSMUSG00000081632.1 ENSMUSG00000081632 ENSMUST00000118790 Gm11443 processed_pseudogene Interval_90133 chr2 28446092 28447560 + 0 NA promoter-TSS (ENSMUSG00000035829.13) protein_coding-promoter-TSS (ENSMUSG00000035829.13) -1115 ENSMUSG00000035829.13 ENSMUSG00000035829 ENSMUST00000040324 Ppp1r26 protein_coding Interval_138384 chr6 87780752 87781278 + 0 NA Intergenic Intergenic 2943 ENSMUSG00000030054.4 ENSMUSG00000030054 ENSMUST00000032133 Gp9 protein_coding Interval_125513 chr5 67841721 67842685 + 0 NA TTS (ENSMUSG00000107136.1) TEC-TTS (ENSMUSG00000107136.1) 2217 ENSMUSG00000107136.1 ENSMUSG00000107136 ENSMUST00000202099 Gm42466 TEC Interval_164661 chr9 40397040 40398985 + 0 NA intron (ENSMUSG00000040111.17, intron 2 of 20) protein_coding-intron (ENSMUSG00000040111.17, intron 2 of 19) -31110 ENSMUSG00000110928.1 ENSMUSG00000110928 ENSMUST00000214407 Gm48114 TEC Interval_7348 chr1 130350264 130350475 + 0 NA Intergenic Intergenic -69111 ENSMUSG00000086633.1 ENSMUSG00000086633 ENSMUST00000155992 Gm16081 lincRNA Interval_124955 chr5 61938633 61938888 + 0 NA Intergenic Intergenic -65460 ENSMUSG00000106530.2 ENSMUSG00000106530 ENSMUST00000197209 Gm42430 processed_pseudogene Interval_164216 chr9 32644997 32646496 + 0 NA intron (ENSMUSG00000032035.16, intron 1 of 9) protein_coding-intron (ENSMUSG00000032035.16, intron 1 of 3) 9498 ENSMUSG00000032035.16 ENSMUSG00000032035 ENSMUST00000184364 Ets1 protein_coding Interval_56864 chr14 122537995 122538454 + 0 NA intron (ENSMUSG00000041650.15, intron 1 of 4) protein_coding-intron (ENSMUSG00000041650.15, intron 1 of 23) -24395 ENSMUSG00000115652.1 ENSMUSG00000115652 ENSMUST00000228120 Gm18143 processed_pseudogene Interval_12919 chr10 8134897 8135482 + 0 NA Intergenic Intergenic -40942 ENSMUSG00000112109.1 ENSMUSG00000112109 ENSMUST00000219578 Gm30906 lincRNA Interval_23358 chr11 21808831 21809053 + 0 NA intron (ENSMUSG00000020319.9, intron 13 of 17) protein_coding-intron (ENSMUSG00000020319.9, intron 13 of 17) 69008 ENSMUSG00000084004.1 ENSMUSG00000084004 ENSMUST00000117561 Gm12047 processed_pseudogene Interval_100036 chr2 166683487 166684617 + 0 NA intron (ENSMUSG00000039621.13, intron 1 of 2) protein_coding-intron (ENSMUSG00000039621.13, intron 1 of 39) 1978 ENSMUSG00000089145.1 ENSMUSG00000089145 ENSMUST00000158520 Gm25265 misc_RNA Interval_72784 chr17 32165500 32167383 + 0 NA intron (ENSMUSG00000038146.8, intron 1 of 32) protein_coding-intron (ENSMUSG00000038146.8, intron 1 of 32) 16896 ENSMUSG00000117925.1 ENSMUSG00000117925 ENSMUST00000236191 Gm50127 processed_pseudogene Interval_46155 chr13 62063603 62064088 + 0 NA intron (ENSMUSG00000114036.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000114036.1, intron 1 of 1) 28423 ENSMUSG00000074868.2 ENSMUSG00000074868 ENSMUST00000099450 Gm6478 processed_pseudogene Interval_140541 chr6 119402456 119403286 + 0 NA intron (ENSMUSG00000030168.13, intron 1 of 3) protein_coding-intron (ENSMUSG00000030168.13, intron 1 of 7) 14604 ENSMUSG00000030168.13 ENSMUSG00000030168 ENSMUST00000189710 Adipor2 protein_coding Interval_89556 chr2 22734387 22735114 + 0 NA Intergenic Intergenic 21239 ENSMUSG00000083453.1 ENSMUSG00000083453 ENSMUST00000120235 Gm13338 processed_pseudogene Interval_63812 chr16 3542219 3542443 + 0 NA Intergenic Intergenic -6720 ENSMUSG00000088225.1 ENSMUSG00000088225 ENSMUST00000157600 Gm22598 snoRNA Interval_112421 chr4 41156662 41158379 + 0 NA intron (ENSMUSG00000036241.3, intron 1 of 4) protein_coding-intron (ENSMUSG00000036241.3, intron 1 of 4) -11126 ENSMUSG00000082186.2 ENSMUSG00000082186 ENSMUST00000121384 Gm12403 processed_pseudogene Interval_113056 chr4 47255637 47256106 + 0 NA intron (ENSMUSG00000028339.17, intron 6 of 39) protein_coding-intron (ENSMUSG00000028339.17, intron 6 of 38) -2664 ENSMUSG00000028339.17 ENSMUSG00000028339 ENSMUST00000107730 Col15a1 protein_coding Interval_156480 chr8 48578160 48580405 + 0 NA intron (ENSMUSG00000031561.16, intron 2 of 26) protein_coding-intron (ENSMUSG00000031561.16, intron 2 of 28) -23969 ENSMUSG00000031561.16 ENSMUSG00000031561 ENSMUST00000211812 Tenm3 protein_coding Interval_50329 chr14 11868689 11869430 + 0 NA exon (ENSMUSG00000114431.1, exon 1 of 1) TEC-exon (ENSMUSG00000114431.1, exon 1 of 1) 1465 ENSMUSG00000114431.1 ENSMUSG00000114431 ENSMUST00000224051 Gm48601 TEC Interval_29808 chr11 86976128 86976345 + 0 NA intron (ENSMUSG00000018427.8, intron 1 of 4) protein_coding-intron (ENSMUSG00000018427.8, intron 1 of 4) -4212 ENSMUSG00000018427.8 ENSMUSG00000018427 ENSMUST00000238921 Ypel2 protein_coding Interval_132477 chr5 145190912 145192062 + 0 NA promoter-TSS (ENSMUSG00000038690.15) protein_coding-promoter-TSS (ENSMUSG00000038690.15) 41 ENSMUSG00000038690.15 ENSMUSG00000038690 ENSMUST00000200584 Atp5j2 protein_coding Interval_9364 chr1 156596860 156598965 + 0 NA intron (ENSMUSG00000026596.13, intron 1 of 2) protein_coding-intron (ENSMUSG00000026596.13, intron 1 of 11) 14804 ENSMUSG00000104293.1 ENSMUSG00000104293 ENSMUST00000195501 Gm38043 TEC Interval_74685 chr17 55953933 55954462 + 0 NA TTS (ENSMUSG00000097077.1) antisense-TTS (ENSMUSG00000097077.1) 1557 ENSMUSG00000003206.7 ENSMUSG00000003206 ENSMUST00000003274 Ebi3 protein_coding Interval_91127 chr2 35288728 35289602 + 0 NA intron (ENSMUSG00000026879.14, intron 5 of 14) protein_coding-intron (ENSMUSG00000026879.14, intron 3 of 16) 8775 ENSMUSG00000106961.1 ENSMUSG00000106961 ENSMUST00000202212 Gm43128 TEC Interval_15831 chr10 57766412 57767052 + 0 NA Intergenic Intergenic -15622 ENSMUSG00000093552.1 ENSMUSG00000093552 ENSMUST00000177265 Gm5777 processed_pseudogene Interval_83345 chr18 84427876 84428291 + 0 NA intron (ENSMUSG00000048410.17, intron 4 of 8) protein_coding-intron (ENSMUSG00000048410.17, intron 2 of 2) 6852 ENSMUSG00000048410.17 ENSMUSG00000048410 ENSMUST00000182297 Zfp407 protein_coding Interval_78912 chr18 21492751 21492999 + 0 NA exon (ENSMUSG00000117386.1, exon 1 of 1) processed_pseudogene-exon (ENSMUSG00000117386.1, exon 1 of 1) 1224 ENSMUSG00000117386.1 ENSMUSG00000117386 ENSMUST00000234227 Gm4837 processed_pseudogene Interval_101122 chr2 178137629 178137967 + 0 NA intron (ENSMUSG00000027525.18, intron 1 of 12) protein_coding-intron (ENSMUSG00000027525.18, intron 1 of 12) -59373 ENSMUSG00000078861.8 ENSMUSG00000078861 ENSMUST00000108923 Zfp931 protein_coding Interval_122201 chr5 19429277 19429551 + 0 NA intron (ENSMUSG00000040003.18, intron 1 of 2) protein_coding-intron (ENSMUSG00000040003.18, intron 1 of 22) 76709 ENSMUSG00000106204.1 ENSMUSG00000106204 ENSMUST00000197169 Gm21009 processed_pseudogene Interval_105656 chr3 88407010 88407300 + 0 NA intron (ENSMUSG00000028066.15, intron 1 of 3) protein_coding-intron (ENSMUSG00000028066.15, intron 1 of 4) -7445 ENSMUSG00000028066.15 ENSMUSG00000028066 ENSMUST00000191622 Pmf1 protein_coding Interval_46272 chr13 63293460 63294913 + 0 NA intron (ENSMUSG00000021461.17, intron 13 of 13) protein_coding-intron (ENSMUSG00000021458.17, intron 13 of 15) -6298 ENSMUSG00000065599.2 ENSMUSG00000065599 ENSMUST00000083665 Mir23b miRNA Interval_134380 chr6 27657677 27657985 + 0 NA intron (ENSMUSG00000024211.15, intron 5 of 9) protein_coding-intron (ENSMUSG00000024211.15, intron 5 of 9) -10256 ENSMUSG00000088391.1 ENSMUSG00000088391 ENSMUST00000157766 Gm26310 snoRNA Interval_144084 chr7 19359245 19362015 + 0 NA promoter-TSS (ENSMUSG00000040734.14) protein_coding-promoter-TSS (ENSMUSG00000040734.14) 881 ENSMUSG00000040734.14 ENSMUSG00000040734 ENSMUST00000132655 Ppp1r13l protein_coding Interval_2021 chr1 35941496 35942107 + 0 NA Intergenic Intergenic -17118 ENSMUSG00000103096.1 ENSMUSG00000103096 ENSMUST00000191763 Gm8022 processed_pseudogene Interval_35164 chr12 17716073 17716387 + 0 NA intron (ENSMUSG00000071379.2, intron 1 of 3) protein_coding-intron (ENSMUSG00000071379.2, intron 1 of 3) -11996 ENSMUSG00000071379.2 ENSMUSG00000071379 ENSMUST00000222944 Hpcal1 protein_coding Interval_119044 chr4 135178887 135179872 + 0 NA Intergenic Intergenic 26441 ENSMUSG00000070691.10 ENSMUSG00000070691 ENSMUST00000127109 Runx3 protein_coding Interval_129246 chr5 118422021 118422841 + 0 NA Intergenic Intergenic -3613 ENSMUSG00000093041.1 ENSMUSG00000093041 ENSMUST00000175300 Gm26455 miRNA Interval_132140 chr5 142923665 142925004 + 0 NA Intergenic Intergenic -20680 ENSMUSG00000029580.14 ENSMUSG00000029580 ENSMUST00000164765 Actb protein_coding Interval_74932 chr17 57471908 57472196 + 0 NA intron (ENSMUSG00000004730.15, intron 18 of 21) protein_coding-intron (ENSMUSG00000004730.15, intron 18 of 22) 73453 ENSMUSG00000090655.2 ENSMUSG00000090655 ENSMUST00000234162 Vmn2r120 protein_coding Interval_28387 chr11 75551791 75552513 + 0 NA TTS (ENSMUSG00000093100.1) miRNA-TTS (ENSMUSG00000093100.1) 723 ENSMUSG00000093100.1 ENSMUSG00000093100 ENSMUST00000175359 Mir3971 miRNA Interval_164975 chr9 43549162 43549514 + 0 NA Intergenic Intergenic -33506 ENSMUSG00000111110.1 ENSMUSG00000111110 ENSMUST00000216439 Gm36855 lincRNA Interval_97225 chr2 132346974 132347992 + 0 NA intron (ENSMUSG00000050558.13, intron 2 of 2) protein_coding-intron (ENSMUSG00000050558.13, intron 2 of 2) 37938 ENSMUSG00000050558.13 ENSMUSG00000050558 ENSMUST00000145995 Prokr2 protein_coding Interval_116501 chr4 114793823 114794124 + 0 NA Intergenic Intergenic -27749 ENSMUSG00000055198.3 ENSMUSG00000055198 ENSMUST00000137570 Gm12830 protein_coding Interval_136508 chr6 55056464 55056685 + 0 NA intron (ENSMUSG00000029777.10, intron 4 of 4) protein_coding-intron (ENSMUSG00000029777.10, intron 7 of 16) 8511 ENSMUSG00000029777.10 ENSMUSG00000029777 ENSMUST00000203334 Gars protein_coding Interval_31679 chr11 102209731 102210046 + 0 NA intron (ENSMUSG00000008855.17, intron 1 of 4) protein_coding-intron (ENSMUSG00000008855.17, intron 5 of 28) 17863 ENSMUSG00000034793.15 ENSMUSG00000034793 ENSMUST00000153178 G6pc3 protein_coding Interval_35528 chr12 24516148 24517294 + 0 NA intron (ENSMUSG00000059669.8, intron 6 of 11) protein_coding-intron (ENSMUSG00000059669.8, intron 6 of 14) -3882 ENSMUSG00000113692.1 ENSMUSG00000113692 ENSMUST00000220562 Gm47482 processed_pseudogene Interval_46404 chr13 64674191 64674540 + 0 NA TTS (ENSMUSG00000114168.1) lincRNA-TTS (ENSMUSG00000114168.1) 502 ENSMUSG00000113405.1 ENSMUSG00000113405 ENSMUST00000221316 Gm4935 processed_pseudogene Interval_72737 chr17 31833639 31834086 + 0 NA Intergenic Intergenic 17713 ENSMUSG00000024042.7 ENSMUSG00000024042 ENSMUST00000234142 Sik1 protein_coding Interval_65874 chr16 29972054 29973483 + 0 NA intron (ENSMUSG00000075286.4, intron 1 of 5) lincRNA-intron (ENSMUSG00000075286.4, intron 1 of 5) 6416 ENSMUSG00000075286.4 ENSMUSG00000075286 ENSMUST00000100016 Gm1968 lincRNA Interval_41518 chr12 115709742 115709969 + 0 NA Intergenic Intergenic -14061 ENSMUSG00000098336.1 ENSMUSG00000098336 ENSMUST00000184417 Mir6388 miRNA Interval_23315 chr11 21314061 21314650 + 0 NA exon (ENSMUSG00000020128.15, exon 1 of 2) protein_coding-exon (ENSMUSG00000020128.15, exon 1 of 2) 1850 ENSMUSG00000020128.15 ENSMUSG00000020128 ENSMUST00000153159 Vps54 protein_coding Interval_81018 chr18 53015141 53015648 + 0 NA Intergenic Intergenic 62845 ENSMUSG00000118195.1 ENSMUSG00000118195 ENSMUST00000235787 Gm8572 processed_pseudogene Interval_50627 chr14 16805699 16806351 + 0 NA intron (ENSMUSG00000017491.9, intron 1 of 3) protein_coding-intron (ENSMUSG00000017491.9, intron 1 of 3) -140634 ENSMUSG00000114890.1 ENSMUSG00000114890 ENSMUST00000223705 Tpi-rs9 processed_pseudogene Interval_7353 chr1 130372137 130372579 + 0 NA Intergenic Intergenic 50382 ENSMUSG00000026401.15 ENSMUSG00000026401 ENSMUST00000136497 Cd55b protein_coding Interval_20722 chr10 120535689 120536035 + 0 NA Intergenic Intergenic -59393 ENSMUSG00000056758.14 ENSMUSG00000056758 ENSMUST00000159310 Hmga2 protein_coding Interval_131682 chr5 139274633 139275392 + 0 NA promoter-TSS (ENSMUSG00000056413.16) protein_coding-promoter-TSS (ENSMUSG00000056413.16) 21515 ENSMUSG00000025858.12 ENSMUSG00000025858 ENSMUST00000124420 Get4 protein_coding Interval_29113 chr11 80406654 80408382 + 0 NA Intergenic Intergenic -21168 ENSMUSG00000017428.16 ENSMUSG00000017428 ENSMUST00000125591 Psmd11 protein_coding Interval_146355 chr7 45480907 45482091 + 0 NA promoter-TSS (ENSMUSG00000023467.18) protein_coding-promoter-TSS (ENSMUSG00000023467.18) -378 ENSMUSG00000023467.18 ENSMUSG00000023467 ENSMUST00000209763 Tulp2 protein_coding Interval_51649 chr14 31080955 31081632 + 0 NA intron (ENSMUSG00000042323.17, intron 17 of 25) protein_coding-intron (ENSMUSG00000042323.17, intron 17 of 27) -3858 ENSMUSG00000090305.2 ENSMUSG00000090305 ENSMUST00000171235 Gm5459 processed_pseudogene Interval_154194 chr8 13326695 13326918 + 0 NA Intergenic Intergenic -12015 ENSMUSG00000038482.11 ENSMUSG00000038482 ENSMUST00000209945 Tfdp1 protein_coding Interval_115957 chr4 106593450 106593948 + 0 NA intron (ENSMUSG00000054362.9, intron 9 of 10) protein_coding-intron (ENSMUSG00000054362.9, intron 9 of 10) -4591 ENSMUSG00000085023.1 ENSMUSG00000085023 ENSMUST00000146976 Gm12744 antisense Interval_19494 chr10 100402104 100402529 + 0 NA Intergenic Intergenic -5246 ENSMUSG00000112453.1 ENSMUSG00000112453 ENSMUST00000167995 Gm4781 unprocessed_pseudogene Interval_62809 chr15 97141007 97141241 + 0 NA Intergenic Intergenic 26120 ENSMUSG00000116295.1 ENSMUSG00000116295 ENSMUST00000229491 Gm32885 lincRNA Interval_60690 chr15 76186653 76187431 + 0 NA intron (ENSMUSG00000022565.15, intron 20 of 20) protein_coding-intron (ENSMUSG00000022565.15, intron 19 of 31) 19279 ENSMUSG00000022565.15 ENSMUSG00000022565 ENSMUST00000165135 Plec protein_coding Interval_167726 chr9 72307131 72307357 + 0 NA promoter-TSS (ENSMUSG00000038535.17) protein_coding-promoter-TSS (ENSMUSG00000038535.17) -4897 ENSMUSG00000038535.17 ENSMUSG00000038535 ENSMUST00000183468 Zfp280d protein_coding Interval_96949 chr2 129817696 129817940 + 0 NA intron (ENSMUSG00000037885.18, intron 3 of 3) protein_coding-intron (ENSMUSG00000037885.18, intron 3 of 3) 17301 ENSMUSG00000037885.18 ENSMUSG00000037885 ENSMUST00000166282 Stk35 protein_coding Interval_117684 chr4 125533861 125536220 + 0 NA intron (ENSMUSG00000001985.9, intron 1 of 15) protein_coding-intron (ENSMUSG00000001985.9, intron 1 of 15) 30291 ENSMUSG00000094403.1 ENSMUSG00000094403 ENSMUST00000102081 Mir692-2 miRNA Interval_67554 chr16 50753891 50754127 + 0 NA Intergenic Intergenic -21326 ENSMUSG00000022639.14 ENSMUSG00000022639 ENSMUST00000169791 Dubr lincRNA Interval_78911 chr18 21446068 21446266 + 0 NA Intergenic Intergenic 47932 ENSMUSG00000117386.1 ENSMUSG00000117386 ENSMUST00000234227 Gm4837 processed_pseudogene Interval_161433 chr8 120439322 120440516 + 0 NA intron (ENSMUSG00000031822.20, intron 2 of 2) protein_coding-intron (ENSMUSG00000092329.1, intron 1 of 15) 3630 ENSMUSG00000080549.2 ENSMUSG00000080549 ENSMUST00000116899 Gm22715 miRNA Interval_174398 chrX 151168444 151169956 + 0 NA promoter-TSS (ENSMUSG00000086286.1) lincRNA-promoter-TSS (ENSMUSG00000086286.1) -500 ENSMUSG00000086286.1 ENSMUSG00000086286 ENSMUST00000151778 Gm15138 lincRNA Interval_60552 chr15 74896307 74898451 + 0 NA promoter-TSS (ENSMUSG00000063522.5) protein_coding-promoter-TSS (ENSMUSG00000063522.5) -358 ENSMUSG00000063522.5 ENSMUSG00000063522 ENSMUST00000077004 Ly6m protein_coding Interval_100873 chr2 173046419 173047012 + 0 NA Intergenic Intergenic -12135 ENSMUSG00000087442.1 ENSMUSG00000087442 ENSMUST00000139677 Gm14453 antisense Interval_149222 chr7 96398806 96399615 + 0 NA intron (ENSMUSG00000048078.16, intron 2 of 2) protein_coding-intron (ENSMUSG00000048078.16, intron 2 of 32) 36807 ENSMUSG00000082780.2 ENSMUSG00000082780 ENSMUST00000117302 Rps11-ps5 processed_pseudogene Interval_122545 chr5 23711840 23713146 + 0 NA intron (ENSMUSG00000105987.4, intron 1 of 3) processed_transcript-intron (ENSMUSG00000105987.4, intron 1 of 2) 173 ENSMUSG00000105987.4 ENSMUSG00000105987 ENSMUST00000197153 AI506816 processed_transcript Interval_118928 chr4 134506301 134506928 + 0 NA exon (ENSMUSG00000037348.15, exon 2 of 3) protein_coding-exon (ENSMUSG00000037348.15, exon 2 of 3) -4385 ENSMUSG00000078521.2 ENSMUSG00000078521 ENSMUST00000105866 Aunip protein_coding Interval_104947 chr3 79218335 79219472 + 0 NA intron (ENSMUSG00000062232.14, intron 1 of 29) protein_coding-intron (ENSMUSG00000062232.14, intron 1 of 29) 5984 ENSMUSG00000104585.1 ENSMUSG00000104585 ENSMUST00000200412 4921511C10Rik antisense Interval_147361 chr7 66115164 66115384 + 0 NA intron (ENSMUSG00000032640.10, intron 1 of 2) protein_coding-intron (ENSMUSG00000032640.10, intron 1 of 2) 4129 ENSMUSG00000065800.1 ENSMUSG00000065800 ENSMUST00000083866 Gm23042 snRNA Interval_99872 chr2 165415984 165416703 + 0 NA intron (ENSMUSG00000018459.15, intron 1 of 1) protein_coding-intron (ENSMUSG00000018459.15, intron 10 of 12) -15938 ENSMUSG00000027670.4 ENSMUSG00000027670 ENSMUST00000029213 Ocstamp protein_coding Interval_29429 chr11 83947585 83948791 + 0 NA intron (ENSMUSG00000020677.7, intron 1 of 4) protein_coding-intron (ENSMUSG00000020677.7, intron 4 of 14) 1933 ENSMUSG00000020677.7 ENSMUSG00000020677 ENSMUST00000130982 Ddx52 protein_coding Interval_81254 chr18 56763471 56763810 + 0 NA intron (ENSMUSG00000032656.14, intron 4 of 4) protein_coding-intron (ENSMUSG00000032656.14, intron 4 of 4) -6077 ENSMUSG00000087597.1 ENSMUSG00000087597 ENSMUST00000128240 Gm15345 antisense Interval_19460 chr10 99599485 99600204 + 0 NA Intergenic Intergenic -9327 ENSMUSG00000111962.1 ENSMUSG00000111962 ENSMUST00000218263 Gm20110 lincRNA Interval_124020 chr5 37309051 37310038 + 0 NA intron (ENSMUSG00000029122.11, intron 2 of 7) protein_coding-intron (ENSMUSG00000029122.11, intron 15 of 20) 8828 ENSMUSG00000029122.11 ENSMUSG00000029122 ENSMUST00000133376 Evc protein_coding Interval_169108 chr9 92549875 92550448 + 0 NA intron (ENSMUSG00000032374.14, intron 1 of 19) protein_coding-intron (ENSMUSG00000032374.14, intron 1 of 18) -7292 ENSMUSG00000103622.1 ENSMUSG00000103622 ENSMUST00000191720 Gm38391 TEC Interval_42165 chr13 9389463 9391209 + 0 NA intron (ENSMUSG00000048264.16, intron 1 of 36) protein_coding-intron (ENSMUSG00000048264.16, intron 1 of 38) -22181 ENSMUSG00000112955.1 ENSMUSG00000112955 ENSMUST00000221027 Gm48889 TEC Interval_27397 chr11 67314263 67315142 + 0 NA Intergenic Intergenic 34711 ENSMUSG00000055775.16 ENSMUSG00000055775 ENSMUST00000139052 Myh8 protein_coding Interval_161877 chr8 123376201 123376405 + 0 NA intron (ENSMUSG00000001472.17, intron 1 of 17) protein_coding-intron (ENSMUSG00000001472.17, intron 1 of 17) -23027 ENSMUSG00000001472.17 ENSMUSG00000001472 ENSMUST00000212996 Tcf25 protein_coding Interval_9048 chr1 153279239 153279640 + 0 NA intron (ENSMUSG00000026478.14, intron 1 of 27) protein_coding-intron (ENSMUSG00000026478.14, intron 1 of 27) 7751 ENSMUSG00000103818.1 ENSMUSG00000103818 ENSMUST00000194884 Gm38009 TEC Interval_41212 chr12 111813454 111814612 + 0 NA promoter-TSS (ENSMUSG00000021286.8) protein_coding-promoter-TSS (ENSMUSG00000021286.8) -175 ENSMUSG00000021286.8 ENSMUSG00000021286 ENSMUST00000221313 Zfyve21 protein_coding Interval_136743 chr6 58921761 58922259 + 0 NA Intergenic Intergenic -15337 ENSMUSG00000055430.4 ENSMUSG00000055430 ENSMUST00000205101 Nap1l5 protein_coding Interval_164575 chr9 39127395 39128047 + 0 NA promoter-TSS (ENSMUSG00000049708.9) protein_coding-promoter-TSS (ENSMUSG00000049708.9) -410 ENSMUSG00000049708.9 ENSMUSG00000049708 ENSMUST00000214052 Olfr27 protein_coding Interval_99751 chr2 164700376 164701326 + 0 NA exon (ENSMUSG00000017310.7, exon 3 of 4) protein_coding-exon (ENSMUSG00000017310.7, exon 3 of 4) 2350 ENSMUSG00000017310.7 ENSMUSG00000017310 ENSMUST00000017454 Spint4 protein_coding Interval_162698 chr9 7897412 7898017 + 0 NA Intergenic Intergenic -37388 ENSMUSG00000032000.17 ENSMUSG00000032000 ENSMUST00000159672 Birc3 protein_coding Interval_83214 chr18 82806287 82807102 + 0 NA Intergenic Intergenic -47653 ENSMUSG00000101773.1 ENSMUSG00000101773 ENSMUST00000188435 2210420H20Rik lincRNA Interval_38268 chr12 76809632 76810422 + 0 NA intron (ENSMUSG00000021062.15, intron 1 of 6) protein_coding-intron (ENSMUSG00000021062.15, intron 1 of 6) 12881 ENSMUSG00000021062.15 ENSMUSG00000021062 ENSMUST00000134124 Rab15 protein_coding Interval_26949 chr11 61772124 61772523 + 0 NA Intergenic Intergenic -10235 ENSMUSG00000020528.14 ENSMUSG00000020528 ENSMUST00000123575 Prpsap2 protein_coding Interval_163851 chr9 27137407 27138014 + 0 NA intron (ENSMUSG00000031990.15, intron 1 of 2) protein_coding-intron (ENSMUSG00000031990.15, intron 1 of 8) -11160 ENSMUSG00000031990.15 ENSMUSG00000031990 ENSMUST00000213682 Jam3 protein_coding Interval_63470 chr15 101255973 101256623 + 0 NA intron (ENSMUSG00000023034.7, intron 1 of 7) protein_coding-intron (ENSMUSG00000023034.7, intron 1 of 7) -16563 ENSMUSG00000023034.7 ENSMUSG00000023034 ENSMUST00000231153 Nr4a1 protein_coding Interval_141661 chr6 132690336 132690710 + 0 NA Intergenic Intergenic 10484 ENSMUSG00000071150.1 ENSMUSG00000071150 ENSMUST00000095395 Tas2r121 protein_coding Interval_73133 chr17 34996376 34997105 + 0 NA Intergenic Intergenic -4577 ENSMUSG00000007029.16 ENSMUSG00000007029 ENSMUST00000174084 Vars protein_coding Interval_152452 chr7 133082683 133082953 + 0 NA intron (ENSMUSG00000030970.16, intron 1 of 6) protein_coding-intron (ENSMUSG00000030970.16, intron 1 of 10) 37453 ENSMUSG00000110282.1 ENSMUSG00000110282 ENSMUST00000209529 B930086L07Rik TEC Interval_67575 chr16 51129098 51129834 + 0 NA Intergenic Intergenic 78336 ENSMUSG00000116706.1 ENSMUSG00000116706 ENSMUST00000231893 Gm32431 lincRNA Interval_45677 chr13 56780515 56780823 + 0 NA intron (ENSMUSG00000021541.14, intron 9 of 10) protein_coding-intron (ENSMUSG00000021541.14, intron 10 of 11) -26842 ENSMUSG00000110086.1 ENSMUSG00000110086 ENSMUST00000210744 Gm45623 protein_coding Interval_142020 chr6 136583079 136583647 + 0 NA TTS (ENSMUSG00000030213.12) protein_coding-TTS (ENSMUSG00000030213.12) -37269 ENSMUSG00000107760.1 ENSMUSG00000107760 ENSMUST00000204462 Gm44401 TEC Interval_104839 chr3 75715092 75715569 + 0 NA TTS (ENSMUSG00000088638.1) snoRNA-TTS (ENSMUSG00000088638.1) 540 ENSMUSG00000088638.1 ENSMUSG00000088638 ENSMUST00000158013 Gm25846 snoRNA Interval_71187 chr17 21008453 21009910 + 0 NA intron (ENSMUSG00000067942.6, intron 1 of 4) protein_coding-intron (ENSMUSG00000067942.6, intron 1 of 4) 137 ENSMUSG00000067942.6 ENSMUSG00000067942 ENSMUST00000232663 Zfp160 protein_coding Interval_150434 chr7 110573111 110573620 + 0 NA intron (ENSMUSG00000038371.15, intron 1 of 18) protein_coding-intron (ENSMUSG00000038371.15, intron 1 of 40) 46573 ENSMUSG00000060777.4 ENSMUSG00000060777 ENSMUST00000167650 Gm10087 processed_pseudogene Interval_44550 chr13 45976736 45977503 + 0 NA Intergenic Intergenic 11768 ENSMUSG00000038152.4 ENSMUSG00000038152 ENSMUST00000189843 5033430I15Rik lincRNA Interval_9965 chr1 164433953 164434163 + 0 NA intron (ENSMUSG00000026575.15, intron 14 of 15) protein_coding-intron (ENSMUSG00000026575.15, intron 12 of 12) 9345 ENSMUSG00000103493.1 ENSMUSG00000103493 ENSMUST00000194180 Gm37411 TEC Interval_63423 chr15 100974377 100975352 + 0 NA TTS (ENSMUSG00000023033.14) protein_coding-TTS (ENSMUSG00000023033.14) 4742 ENSMUSG00000023033.14 ENSMUSG00000023033 ENSMUST00000201246 Scn8a protein_coding Interval_9066 chr1 153368769 153369316 + 0 NA Intergenic Intergenic 45191 ENSMUSG00000073538.10 ENSMUSG00000073538 ENSMUST00000188717 E330020D12Rik processed_transcript Interval_173128 chrX 73032131 73032435 + 0 NA TTS (ENSMUSG00000031351.15) protein_coding-TTS (ENSMUSG00000031351.15) 3820 ENSMUSG00000050424.9 ENSMUSG00000050424 ENSMUST00000051569 Pnma5 protein_coding Interval_128509 chr5 113723917 113725062 + 0 NA intron (ENSMUSG00000042184.11, intron 1 of 2) protein_coding-intron (ENSMUSG00000042184.11, intron 1 of 2) 283 ENSMUSG00000042184.11 ENSMUSG00000042184 ENSMUST00000047891 1700069L16Rik protein_coding Interval_36514 chr12 48035157 48035675 + 0 NA Intergenic Intergenic 12118 ENSMUSG00000111984.1 ENSMUSG00000111984 ENSMUST00000218240 Gm46327 unprocessed_pseudogene Interval_5955 chr1 93511449 93512603 + 0 NA promoter-TSS (ENSMUSG00000034066.13) protein_coding-promoter-TSS (ENSMUSG00000034066.13) -86 ENSMUSG00000034066.13 ENSMUSG00000034066 ENSMUST00000122402 Farp2 protein_coding Interval_155644 chr8 35508879 35509183 + 0 NA Intergenic Intergenic -27623 ENSMUSG00000031527.7 ENSMUSG00000031527 ENSMUST00000210483 Eri1 protein_coding Interval_9682 chr1 160999659 161000497 + 0 NA TTS (ENSMUSG00000103680.1) TEC-TTS (ENSMUSG00000103680.1) 1767 ENSMUSG00000103680.1 ENSMUSG00000103680 ENSMUST00000194570 Gm37072 TEC Interval_24484 chr11 33598478 33598979 + 0 NA promoter-TSS (ENSMUSG00000073052.4) lincRNA-promoter-TSS (ENSMUSG00000073052.4) -9252 ENSMUSG00000073052.4 ENSMUSG00000073052 ENSMUST00000238565 D130052B06Rik lincRNA Interval_161070 chr8 117292475 117292858 + 0 NA intron (ENSMUSG00000034390.16, intron 1 of 10) protein_coding-intron (ENSMUSG00000034390.16, intron 1 of 20) -130750 ENSMUSG00000034390.16 ENSMUSG00000034390 ENSMUST00000212884 Cmip protein_coding Interval_122930 chr5 27453256 27454695 + 0 NA intron (ENSMUSG00000061576.15, intron 4 of 25) protein_coding-intron (ENSMUSG00000061576.15, intron 4 of 25) 47387 ENSMUSG00000048703.9 ENSMUSG00000048703 ENSMUST00000124535 Speer4b protein_coding Interval_156132 chr8 45015586 45015862 + 0 NA intron (ENSMUSG00000070047.14, intron 7 of 28) protein_coding-intron (ENSMUSG00000070047.14, intron 6 of 25) 6661 ENSMUSG00000097491.1 ENSMUSG00000097491 ENSMUST00000180753 Gm2366 antisense Interval_60494 chr15 74387221 74388163 + 0 NA Intergenic Intergenic 52752 ENSMUSG00000118581.1 ENSMUSG00000118581 ENSMUST00000239328 AC119183.1 unitary_pseudogene Interval_134403 chr6 28369169 28369783 + 0 NA intron (ENSMUSG00000039841.14, intron 1 of 6) protein_coding-intron (ENSMUSG00000039841.14, intron 1 of 6) -6311 ENSMUSG00000083107.1 ENSMUSG00000083107 ENSMUST00000117943 Gm5303 processed_pseudogene Interval_57088 chr15 6016638 6017258 + 0 NA Intergenic Intergenic -18013 ENSMUSG00000115093.1 ENSMUSG00000115093 ENSMUST00000227373 Gm8047 processed_pseudogene Interval_112057 chr4 33778254 33778460 + 0 NA Intergenic Intergenic -96866 ENSMUSG00000077397.1 ENSMUSG00000077397 ENSMUST00000104209 Gm24341 snoRNA Interval_67547 chr16 50576811 50577428 + 0 NA Intergenic Intergenic -13384 ENSMUSG00000116848.1 ENSMUSG00000116848 ENSMUST00000231324 4930542D17Rik antisense Interval_47176 chr13 77122168 77122485 + 0 NA intron (ENSMUSG00000021597.16, intron 4 of 5) protein_coding-intron (ENSMUSG00000021597.16, intron 4 of 20) 13139 ENSMUSG00000021597.16 ENSMUSG00000021597 ENSMUST00000162320 Slf1 protein_coding Interval_148705 chr7 84360831 84361914 + 0 NA intron (ENSMUSG00000015709.9, intron 3 of 19) protein_coding-intron (ENSMUSG00000015709.9, intron 2 of 18) 6539 ENSMUSG00000015709.9 ENSMUSG00000015709 ENSMUST00000208863 Arnt2 protein_coding Interval_100451 chr2 169077319 169077705 + 0 NA Intergenic Intergenic 16392 ENSMUSG00000080415.1 ENSMUSG00000080415 ENSMUST00000116765 Gm26469 miRNA Interval_97681 chr2 142708696 142708980 + 0 NA intron (ENSMUSG00000038844.10, intron 20 of 26) protein_coding-intron (ENSMUSG00000038844.10, intron 19 of 25) -78058 ENSMUSG00000088134.1 ENSMUSG00000088134 ENSMUST00000157509 Gm22310 snoRNA Interval_80871 chr18 49758925 49759300 + 0 NA Intergenic Intergenic 3318 ENSMUSG00000087020.1 ENSMUSG00000087020 ENSMUST00000149935 Gm16283 processed_transcript Interval_150304 chr7 109480874 109481105 + 0 NA exon (ENSMUSG00000031026.15, exon 7 of 20) protein_coding-exon (ENSMUSG00000031026.15, exon 7 of 20) -5855 ENSMUSG00000031026.15 ENSMUSG00000031026 ENSMUST00000137704 Trim66 protein_coding Interval_172442 chrX 20364005 20365138 + 0 NA promoter-TSS (ENSMUSG00000060090.16) protein_coding-promoter-TSS (ENSMUSG00000060090.16) -4 ENSMUSG00000060090.16 ENSMUSG00000060090 ENSMUST00000133619 Rp2 protein_coding Interval_45540 chr13 55726838 55728107 + 0 NA exon (ENSMUSG00000021496.12, exon 1 of 4) protein_coding-exon (ENSMUSG00000021496.12, exon 1 of 4) 104 ENSMUSG00000021496.12 ENSMUSG00000021496 ENSMUST00000124968 Pcbd2 protein_coding Interval_92626 chr2 61661959 61662895 + 0 NA Intergenic Intergenic 18596 ENSMUSG00000064289.15 ENSMUSG00000064289 ENSMUST00000154693 Tank protein_coding Interval_153107 chr7 141401225 141403920 + 0 NA TTS (ENSMUSG00000025503.5) protein_coding-TTS (ENSMUSG00000025503.5) 3144 ENSMUSG00000025503.5 ENSMUSG00000025503 ENSMUST00000125597 Taldo1 protein_coding Interval_108730 chr3 130769095 130769283 + 0 NA intron (ENSMUSG00000105789.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000105789.1, intron 1 of 1) 9924 ENSMUSG00000105716.1 ENSMUSG00000105716 ENSMUST00000196697 Gm43522 lincRNA Interval_172824 chrX 50617147 50617478 + 0 NA intron (ENSMUSG00000085396.7, intron 3 of 19) processed_transcript-intron (ENSMUSG00000085396.7, intron 3 of 6) -52429 ENSMUSG00000085396.7 ENSMUSG00000085396 ENSMUST00000148530 Firre processed_transcript Interval_101647 chr3 8509145 8511803 + 0 NA intron (ENSMUSG00000027500.10, intron 1 of 1) protein_coding-intron (ENSMUSG00000027500.10, intron 1 of 4) 888 ENSMUSG00000027500.10 ENSMUSG00000027500 ENSMUST00000194307 Stmn2 protein_coding Interval_59155 chr15 45092447 45092830 + 0 NA Intergenic Intergenic 22282 ENSMUSG00000022342.6 ENSMUSG00000022342 ENSMUST00000228536 Kcnv1 protein_coding Interval_23516 chr11 23063387 23065543 + 0 NA Intergenic Intergenic -1233 ENSMUSG00000088010.1 ENSMUSG00000088010 ENSMUST00000157385 Gm23740 rRNA Interval_22831 chr11 16441239 16441667 + 0 NA Intergenic Intergenic 2199 ENSMUSG00000083925.1 ENSMUSG00000083925 ENSMUST00000118857 Gm12012 processed_pseudogene Interval_98473 chr2 152669310 152670333 + 0 NA intron (ENSMUSG00000019188.16, intron 1 of 2) protein_coding-intron (ENSMUSG00000019188.16, intron 1 of 10) 335 ENSMUSG00000019188.16 ENSMUSG00000019188 ENSMUST00000129439 H13 protein_coding Interval_13560 chr10 19607786 19608011 + 0 NA intron (ENSMUSG00000020009.13, intron 2 of 2) protein_coding-intron (ENSMUSG00000020009.13, intron 6 of 6) -14100 ENSMUSG00000039760.8 ENSMUSG00000039760 ENSMUST00000036564 Il22ra2 protein_coding Interval_87048 chr19 45795770 45797192 + 0 NA promoter-TSS (ENSMUSG00000025221.16) protein_coding-promoter-TSS (ENSMUSG00000025221.16) 7093 ENSMUSG00000025221.16 ENSMUSG00000025221 ENSMUST00000159446 Kcnip2 protein_coding Interval_46424 chr13 65152326 65152638 + 0 NA exon (ENSMUSG00000049806.4, exon 1 of 1) protein_coding-exon (ENSMUSG00000049806.4, exon 1 of 1) 2242 ENSMUSG00000049806.4 ENSMUSG00000049806 ENSMUST00000058907 Olfr466 protein_coding Interval_34824 chr12 12307326 12307612 + 0 NA intron (ENSMUSG00000020589.17, intron 3 of 12) protein_coding-intron (ENSMUSG00000020589.17, intron 2 of 11) 45286 ENSMUSG00000020589.17 ENSMUSG00000020589 ENSMUST00000222357 Fam49a protein_coding Interval_167339 chr9 67573622 67575685 + 0 NA Intergenic Intergenic -125528 ENSMUSG00000111819.1 ENSMUSG00000111819 ENSMUST00000216655 Gm47110 processed_pseudogene Interval_70185 chr17 6032828 6033067 + 0 NA TTS (ENSMUSG00000023805.17) protein_coding-TTS (ENSMUSG00000023805.17) 17108 ENSMUSG00000015659.12 ENSMUSG00000015659 ENSMUST00000139542 Serac1 protein_coding Interval_126840 chr5 94045783 94046376 + 0 NA Intergenic Intergenic 24466 ENSMUSG00000072822.2 ENSMUSG00000072822 ENSMUST00000094587 BC061212 protein_coding Interval_22645 chr11 12457167 12458911 + 0 NA intron (ENSMUSG00000020173.17, intron 1 of 11) protein_coding-intron (ENSMUSG00000020173.17, intron 1 of 14) -45895 ENSMUSG00000020173.17 ENSMUSG00000020173 ENSMUST00000146067 Cobl protein_coding Interval_52975 chr14 52517716 52518001 + 0 NA Intergenic Intergenic -8776 ENSMUSG00000106131.2 ENSMUSG00000106131 ENSMUST00000198892 Gm36382 processed_pseudogene Interval_61499 chr15 81997046 81997586 + 0 NA intron (ENSMUSG00000022472.16, intron 5 of 5) protein_coding-intron (ENSMUSG00000022472.16, intron 6 of 6) 16776 ENSMUSG00000061633.3 ENSMUSG00000061633 ENSMUST00000074608 1700029P11Rik protein_coding Interval_8640 chr1 145824730 145825875 + 0 NA Intergenic Intergenic -498611 ENSMUSG00000103055.1 ENSMUSG00000103055 ENSMUST00000194549 Gm38269 TEC Interval_143545 chr7 12478010 12479478 + 0 NA intron (ENSMUSG00000030386.19, intron 1 of 7) protein_coding-intron (ENSMUSG00000030386.19, intron 1 of 6) 381 ENSMUSG00000030386.19 ENSMUSG00000030386 ENSMUST00000133515 Zfp606 protein_coding Interval_51935 chr14 34077233 34077475 + 0 NA TTS (ENSMUSG00000047441.4) protein_coding-TTS (ENSMUSG00000047441.4) -7399 ENSMUSG00000115489.1 ENSMUSG00000115489 ENSMUST00000227780 Gm49129 processed_pseudogene Interval_144770 chr7 28145350 28146191 + 0 NA intron (ENSMUSG00000078776.9, intron 6 of 18) protein_coding-intron (ENSMUSG00000078776.9, intron 7 of 19) 15954 ENSMUSG00000078776.9 ENSMUSG00000078776 ENSMUST00000150948 9530053A07Rik protein_coding Interval_16772 chr10 68071007 68071469 + 0 NA Intergenic Intergenic -44612 ENSMUSG00000086838.1 ENSMUSG00000086838 ENSMUST00000143555 Gm16212 antisense Interval_105793 chr3 89359848 89360298 + 0 NA intron (ENSMUSG00000042672.15, intron 2 of 4) protein_coding-intron (ENSMUSG00000042672.15, intron 3 of 15) -1902 ENSMUSG00000109293.1 ENSMUSG00000109293 ENSMUST00000208216 Dcst2 protein_coding Interval_164745 chr9 41013960 41014846 + 0 NA TTS (ENSMUSG00000032020.15) protein_coding-TTS (ENSMUSG00000032020.15) -9817 ENSMUSG00000032021.14 ENSMUSG00000032021 ENSMUST00000034519 Crtam protein_coding Interval_89253 chr2 18472416 18472741 + 0 NA Intergenic Intergenic -95548 ENSMUSG00000081181.1 ENSMUSG00000081181 ENSMUST00000120891 Gm13353 processed_pseudogene Interval_134478 chr6 29025869 29026456 + 0 NA exon (ENSMUSG00000092090.2, exon 2 of 2) lincRNA-exon (ENSMUSG00000092090.2, exon 2 of 2) 3543 ENSMUSG00000065469.1 ENSMUSG00000065469 ENSMUST00000083535 Mir129-1 miRNA Interval_55157 chr14 78712372 78713136 + 0 NA intron (ENSMUSG00000034731.11, intron 2 of 29) protein_coding-intron (ENSMUSG00000034731.11, intron 1 of 28) 8944 ENSMUSG00000115107.1 ENSMUSG00000115107 ENSMUST00000228480 Gm18368 processed_pseudogene Interval_146701 chr7 49548283 49548561 + 0 NA exon (ENSMUSG00000052512.17, exon 14 of 38) protein_coding-exon (ENSMUSG00000052512.17, exon 14 of 38) 78710 ENSMUSG00000102148.1 ENSMUSG00000102148 ENSMUST00000193746 Gm38059 TEC Interval_58281 chr15 31601061 31602987 + 0 NA promoter-TSS (ENSMUSG00000022234.15) protein_coding-promoter-TSS (ENSMUSG00000022234.15) -94 ENSMUSG00000039065.11 ENSMUSG00000039065 ENSMUST00000161061 Atpsckmt protein_coding Interval_76497 chr17 80601381 80602265 + 0 NA intron (ENSMUSG00000024242.15, intron 13 of 18) protein_coding-intron (ENSMUSG00000024242.15, intron 28 of 33) 23163 ENSMUSG00000024242.15 ENSMUSG00000024242 ENSMUST00000234486 Map4k3 protein_coding Interval_94015 chr2 80707634 80708189 + 0 NA TTS (ENSMUSG00000077404.1) snoRNA-TTS (ENSMUSG00000077404.1) 322 ENSMUSG00000077404.1 ENSMUSG00000077404 ENSMUST00000104216 Gm25420 snoRNA Interval_73746 chr17 43157876 43158857 + 0 NA promoter-TSS (ENSMUSG00000117011.1) lincRNA-promoter-TSS (ENSMUSG00000117011.1) -100 ENSMUSG00000117011.1 ENSMUSG00000117011 ENSMUST00000232795 E130008D07Rik lincRNA Interval_18298 chr10 84685484 84687611 + 0 NA intron (ENSMUSG00000034453.8, intron 19 of 27) protein_coding-intron (ENSMUSG00000034453.8, intron 19 of 27) 48413 ENSMUSG00000034453.8 ENSMUSG00000034453 ENSMUST00000213543 Polr3b protein_coding Interval_166495 chr9 60082099 60082584 + 0 NA intron (ENSMUSG00000032289.15, intron 6 of 16) protein_coding-intron (ENSMUSG00000032289.15, intron 1 of 11) -40162 ENSMUSG00000088090.1 ENSMUSG00000088090 ENSMUST00000157465 Gm23668 rRNA Interval_51835 chr14 32609414 32610234 + 0 NA intron (ENSMUSG00000041730.14, intron 5 of 5) protein_coding-intron (ENSMUSG00000041730.14, intron 5 of 6) 9866 ENSMUSG00000041730.14 ENSMUSG00000041730 ENSMUST00000228878 Prrxl1 protein_coding Interval_93740 chr2 76384739 76385775 + 0 NA Intergenic Intergenic 15273 ENSMUSG00000042369.8 ENSMUSG00000042369 ENSMUST00000046389 Rbm45 protein_coding Interval_98847 chr2 155537949 155539006 + 0 NA intron (ENSMUSG00000027605.18, intron 2 of 12) protein_coding-intron (ENSMUSG00000027605.18, intron 2 of 17) -4170 ENSMUSG00000093624.1 ENSMUSG00000093624 ENSMUST00000177439 Mipep-ps processed_pseudogene Interval_130098 chr5 124247715 124250785 + 0 NA intron (ENSMUSG00000029406.15, intron 1 of 24) protein_coding-intron (ENSMUSG00000029406.15, intron 1 of 25) 510 ENSMUSG00000029406.15 ENSMUSG00000029406 ENSMUST00000161644 Pitpnm2 protein_coding Interval_93026 chr2 69646732 69648356 + 0 NA intron (ENSMUSG00000063145.10, intron 1 of 1) protein_coding-intron (ENSMUSG00000063145.10, intron 1 of 11) 314 ENSMUSG00000063145.10 ENSMUSG00000063145 ENSMUST00000127806 Bbs5 protein_coding Interval_153225 chr7 142605289 142605525 + 0 NA intron (ENSMUSG00000110125.1, intron 2 of 3) lincRNA-intron (ENSMUSG00000110125.1, intron 2 of 3) 13663 ENSMUSG00000110125.1 ENSMUSG00000110125 ENSMUST00000210835 Gm33148 lincRNA Interval_89066 chr2 15284428 15284790 + 0 NA Intergenic Intergenic -58016 ENSMUSG00000080930.2 ENSMUSG00000080930 ENSMUST00000119955 Gm13367 processed_pseudogene Interval_142779 chr6 145592330 145592530 + 0 NA intron (ENSMUSG00000054966.13, intron 1 of 1) protein_coding-intron (ENSMUSG00000054966.13, intron 1 of 1) -23327 ENSMUSG00000067338.6 ENSMUSG00000067338 ENSMUST00000087445 Tuba3b protein_coding Interval_9949 chr1 164322319 164323500 + 0 NA intron (ENSMUSG00000026575.15, intron 4 of 15) protein_coding-intron (ENSMUSG00000026575.15, intron 1 of 7) 15182 ENSMUSG00000026575.15 ENSMUSG00000026575 ENSMUST00000192710 Nme7 protein_coding Interval_106868 chr3 101418830 101419678 + 0 NA intron (ENSMUSG00000042035.11, intron 1 of 10) protein_coding-intron (ENSMUSG00000042035.11, intron 2 of 10) 6399 ENSMUSG00000106137.1 ENSMUSG00000106137 ENSMUST00000196233 Gm42538 antisense Interval_70880 chr17 15543924 15545065 + 0 NA TTS (ENSMUSG00000051977.16) protein_coding-TTS (ENSMUSG00000051977.16) -3322 ENSMUSG00000116950.1 ENSMUSG00000116950 ENSMUST00000231919 Gm18564 processed_pseudogene Interval_1176 chr1 16629591 16629822 + 0 NA Intergenic Intergenic -10394 ENSMUSG00000025939.19 ENSMUSG00000025939 ENSMUST00000132919 Ube2w protein_coding Interval_38473 chr12 79279766 79280719 + 0 NA intron (ENSMUSG00000066440.5, intron 11 of 19) protein_coding-intron (ENSMUSG00000066440.5, intron 11 of 41) -35831 ENSMUSG00000066440.5 ENSMUSG00000066440 ENSMUST00000219571 Zfyve26 protein_coding Interval_167881 chr9 73415730 73416902 + 0 NA Intergenic Intergenic 137554 ENSMUSG00000103832.1 ENSMUSG00000103832 ENSMUST00000195250 Gm37611 TEC Interval_72278 chr17 28941683 28942347 + 0 NA intron (ENSMUSG00000045378.5, intron 1 of 2) protein_coding-intron (ENSMUSG00000045378.5, intron 1 of 2) 249 ENSMUSG00000045378.5 ENSMUSG00000045378 ENSMUST00000232977 Pxt1 protein_coding Interval_60962 chr15 78256770 78258015 + 0 NA intron (ENSMUSG00000071715.12, intron 4 of 6) protein_coding-intron (ENSMUSG00000071715.12, intron 7 of 9) -3486 ENSMUSG00000071715.12 ENSMUSG00000071715 ENSMUST00000148646 Ncf4 protein_coding Interval_150397 chr7 110142305 110142597 + 0 NA exon (ENSMUSG00000031016.9, exon 11 of 11) protein_coding-exon (ENSMUSG00000031016.9, exon 11 of 11) 20405 ENSMUSG00000031016.9 ENSMUSG00000031016 ENSMUST00000033326 Wee1 protein_coding Interval_125960 chr5 76229413 76229620 + 0 NA exon (ENSMUSG00000029238.11, exon 21 of 23) protein_coding-exon (ENSMUSG00000029238.11, exon 21 of 23) 3554 ENSMUSG00000106831.1 ENSMUSG00000106831 ENSMUST00000201768 Ube2n-ps1 processed_pseudogene Interval_30022 chr11 88739390 88740510 + 0 NA Intergenic Intergenic 3419 ENSMUSG00000085646.1 ENSMUSG00000085646 ENSMUST00000134567 Gm11493 lincRNA Interval_81579 chr18 61793638 61794217 + 0 NA Intergenic Intergenic -7316 ENSMUSG00000033032.15 ENSMUSG00000033032 ENSMUST00000147278 Afap1l1 protein_coding Interval_118007 chr4 127913503 127913933 + 0 NA Intergenic Intergenic 57233 ENSMUSG00000028813.2 ENSMUSG00000028813 ENSMUST00000030614 CK137956 protein_coding Interval_24459 chr11 33434076 33434501 + 0 NA intron (ENSMUSG00000040594.19, intron 14 of 20) protein_coding-intron (ENSMUSG00000040594.19, intron 14 of 27) -4161 ENSMUSG00000083471.1 ENSMUSG00000083471 ENSMUST00000119766 Gm12118 processed_pseudogene Interval_156163 chr8 45344788 45345489 + 0 NA intron (ENSMUSG00000070044.15, intron 8 of 13) protein_coding-intron (ENSMUSG00000070044.15, intron 8 of 13) -11922 ENSMUSG00000079057.4 ENSMUSG00000079057 ENSMUST00000095328 Cyp4v3 protein_coding Interval_69332 chr16 92286517 92287258 + 0 NA Intergenic Intergenic -8729 ENSMUSG00000039672.12 ENSMUSG00000039672 ENSMUST00000113971 Kcne2 protein_coding Interval_52301 chr14 44216142 44216999 + 0 NA Intergenic Intergenic -3333 ENSMUSG00000115294.1 ENSMUSG00000115294 ENSMUST00000227115 1700047E10Rik antisense Interval_44722 chr13 47771794 47772216 + 0 NA Intergenic Intergenic 104455 ENSMUSG00000114509.1 ENSMUSG00000114509 ENSMUST00000223996 4930471G24Rik lincRNA Interval_148597 chr7 82980048 82980442 + 0 NA Intergenic Intergenic -13028 ENSMUSG00000109541.1 ENSMUSG00000109541 ENSMUST00000208037 Gm6112 processed_pseudogene Interval_28412 chr11 75713851 75714122 + 0 NA Intergenic Intergenic 34444 ENSMUSG00000017776.15 ENSMUSG00000017776 ENSMUST00000147718 Crk protein_coding Interval_39186 chr12 85676630 85677024 + 0 NA Intergenic Intergenic -12465 ENSMUSG00000034266.6 ENSMUSG00000034266 ENSMUST00000222781 Batf protein_coding Interval_162509 chr9 3439013 3440435 + 0 NA promoter-TSS (ENSMUSG00000025898.6) protein_coding-promoter-TSS (ENSMUSG00000025898.6) 35636 ENSMUSG00000025898.6 ENSMUSG00000025898 ENSMUST00000212101 Cwf19l2 protein_coding Interval_77369 chr17 88282788 88283242 + 0 NA intron (ENSMUSG00000117351.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000117351.1, intron 1 of 1) 22363 ENSMUSG00000117497.1 ENSMUSG00000117497 ENSMUST00000234925 1700116H05Rik lincRNA Interval_153309 chr7 143505414 143506966 + 0 NA Intergenic Intergenic -3040 ENSMUSG00000010760.5 ENSMUSG00000010760 ENSMUST00000207561 Phlda2 protein_coding Interval_169006 chr9 90162118 90164080 + 0 NA promoter-TSS (ENSMUSG00000032363.15) protein_coding-promoter-TSS (ENSMUSG00000032363.15) 21 ENSMUSG00000032363.15 ENSMUSG00000032363 ENSMUST00000124441 Adamts7 protein_coding Interval_94079 chr2 83698464 83699507 + 0 NA Intergenic Intergenic 2131 ENSMUSG00000085450.1 ENSMUSG00000085450 ENSMUST00000122851 Gm13686 antisense Interval_64939 chr16 17382142 17383041 + 0 NA intron (ENSMUSG00000041720.14, intron 3 of 54) protein_coding-intron (ENSMUSG00000041720.14, intron 3 of 54) -23395 ENSMUSG00000022765.10 ENSMUSG00000022765 ENSMUST00000023449 Snap29 protein_coding Interval_84525 chr19 12220692 12221251 + 0 NA Intergenic Intergenic 11625 ENSMUSG00000109022.2 ENSMUSG00000109022 ENSMUST00000180978 Olfr1432 protein_coding Interval_53131 chr14 54624923 54626126 + 0 NA TTS (ENSMUSG00000072423.5) protein_coding-TTS (ENSMUSG00000072423.5) 4091 ENSMUSG00000072423.5 ENSMUSG00000072423 ENSMUST00000097177 Psmb11 protein_coding Interval_164011 chr9 30872221 30872786 + 0 NA Intergenic Intergenic 37154 ENSMUSG00000033453.8 ENSMUSG00000033453 ENSMUST00000216215 Adamts15 protein_coding Interval_112164 chr4 35065159 35066322 + 0 NA intron (ENSMUSG00000073910.10, intron 2 of 3) protein_coding-intron (ENSMUSG00000073910.10, intron 2 of 3) -86316 ENSMUSG00000042993.6 ENSMUSG00000042993 ENSMUST00000058595 Ifnk protein_coding Interval_105184 chr3 83480085 83480616 + 0 NA Intergenic Intergenic 76948 ENSMUSG00000103459.1 ENSMUSG00000103459 ENSMUST00000193692 Gm38096 lincRNA Interval_66334 chr16 33214022 33214451 + 0 NA intron (ENSMUSG00000022807.9, intron 5 of 12) protein_coding-intron (ENSMUSG00000022807.9, intron 5 of 12) 29165 ENSMUSG00000022807.9 ENSMUSG00000022807 ENSMUST00000231617 Osbpl11 protein_coding Interval_59805 chr15 59404519 59405563 + 0 NA intron (ENSMUSG00000059586.10, intron 2 of 7) protein_coding-intron (ENSMUSG00000059586.10, intron 2 of 6) 30756 ENSMUSG00000059586.10 ENSMUSG00000059586 ENSMUST00000079703 Nsmce2 protein_coding Interval_154010 chr8 11858063 11858380 + 0 NA Intergenic Intergenic -15938 ENSMUSG00000109772.1 ENSMUSG00000109772 ENSMUST00000210446 Gm39132 lincRNA Interval_139408 chr6 99903615 99904317 + 0 NA Intergenic Intergenic -7121 ENSMUSG00000107204.1 ENSMUSG00000107204 ENSMUST00000201580 Gm43067 lincRNA Interval_26301 chr11 55946134 55947424 + 0 NA intron (ENSMUSG00000086020.1, intron 1 of 4) antisense-intron (ENSMUSG00000086020.1, intron 1 of 4) 94231 ENSMUSG00000037393.2 ENSMUSG00000037393 ENSMUST00000037682 Nmur2 protein_coding Interval_172993 chrX 60212692 60212911 + 0 NA Intergenic Intergenic -44751 ENSMUSG00000094896.1 ENSMUSG00000094896 ENSMUST00000083197 Gm22287 snRNA Interval_116875 chr4 117891576 117892448 + 0 NA promoter-TSS (ENSMUSG00000028540.6) protein_coding-promoter-TSS (ENSMUSG00000028540.6) 11 ENSMUSG00000028540.6 ENSMUSG00000028540 ENSMUST00000126554 Dph2 protein_coding Interval_89140 chr2 17210474 17210852 + 0 NA Intergenic Intergenic -25176 ENSMUSG00000085193.1 ENSMUSG00000085193 ENSMUST00000152803 Gm13322 lincRNA Interval_114656 chr4 83507282 83508355 + 0 NA Intergenic Intergenic -2280 ENSMUSG00000066116.3 ENSMUSG00000066116 ENSMUST00000084445 Gm10154 processed_pseudogene Interval_80936 chr18 50703972 50704177 + 0 NA Intergenic Intergenic -102655 ENSMUSG00000048875.3 ENSMUSG00000048875 ENSMUST00000056460 Pudp protein_coding Interval_102890 chr3 32576372 32578165 + 0 NA TTS (ENSMUSG00000027668.13) protein_coding-TTS (ENSMUSG00000027668.13) 3050 ENSMUSG00000027668.13 ENSMUSG00000027668 ENSMUST00000195334 Mfn1 protein_coding Interval_84056 chr19 6992163 6993117 + 0 NA promoter-TSS (ENSMUSG00000024963.12) protein_coding-promoter-TSS (ENSMUSG00000024963.12) -2832 ENSMUSG00000024963.12 ENSMUSG00000024963 ENSMUST00000235481 Dnajc4 protein_coding Interval_91338 chr2 37906775 37906991 + 0 NA intron (ENSMUSG00000035392.17, intron 12 of 18) protein_coding-intron (ENSMUSG00000035392.17, intron 13 of 21) 112284 ENSMUSG00000107586.1 ENSMUSG00000107586 ENSMUST00000204461 Gm44283 TEC Interval_27766 chr11 69858366 69859198 + 0 NA promoter-TSS (ENSMUSG00000001583.13) protein_coding-promoter-TSS (ENSMUSG00000001583.13) -3180 ENSMUSG00000001583.13 ENSMUSG00000001583 ENSMUST00000125571 Tnk1 protein_coding Interval_152451 chr7 133078504 133079533 + 0 NA intron (ENSMUSG00000030970.16, intron 2 of 3) protein_coding-intron (ENSMUSG00000030970.16, intron 2 of 10) 41253 ENSMUSG00000110282.1 ENSMUSG00000110282 ENSMUST00000209529 B930086L07Rik TEC Interval_156577 chr8 52849244 52849592 + 0 NA Intergenic Intergenic 75287 ENSMUSG00000109983.1 ENSMUSG00000109983 ENSMUST00000211275 Gm9685 processed_pseudogene Interval_59850 chr15 59783065 59784660 + 0 NA Intergenic Intergenic 11097 ENSMUSG00000115426.1 ENSMUSG00000115426 ENSMUST00000228865 Gm19510 lincRNA Interval_61982 chr15 85625127 85626462 + 0 NA Intergenic Intergenic -20289 ENSMUSG00000116004.1 ENSMUSG00000116004 ENSMUST00000230234 Gm49539 lincRNA Interval_162748 chr9 8430315 8430566 + 0 NA Intergenic Intergenic -45833 ENSMUSG00000110828.1 ENSMUSG00000110828 ENSMUST00000216605 Gm47517 processed_pseudogene Interval_153443 chr7 144832506 144832887 + 0 NA Intergenic Intergenic -5387 ENSMUSG00000031074.14 ENSMUSG00000031074 ENSMUST00000105898 Fgf3 protein_coding Interval_101716 chr3 9103196 9103647 + 0 NA Intergenic Intergenic 30654 ENSMUSG00000103011.1 ENSMUSG00000103011 ENSMUST00000193160 Gm8860 processed_pseudogene Interval_16536 chr10 63428912 63430451 + 0 NA promoter-TSS (ENSMUSG00000060843.11) protein_coding-promoter-TSS (ENSMUSG00000060843.11) -7892 ENSMUSG00000048185.5 ENSMUSG00000048185 ENSMUST00000054760 Gm7075 protein_coding Interval_9797 chr1 162477249 162478412 + 0 NA exon (ENSMUSG00000040265.16, exon 1 of 20) protein_coding-exon (ENSMUSG00000040265.16, exon 1 of 20) 150 ENSMUSG00000066752.4 ENSMUSG00000066752 ENSMUST00000159707 Gm10176 TEC Interval_44379 chr13 44458642 44459882 + 0 NA intron (ENSMUSG00000098144.8, intron 4 of 7) lincRNA-intron (ENSMUSG00000098144.8, intron 4 of 7) -3959 ENSMUSG00000098107.1 ENSMUSG00000098107 ENSMUST00000183264 Gm27007 lincRNA Interval_130343 chr5 126230342 126231489 + 0 NA Intergenic Intergenic 158739 ENSMUSG00000094875.1 ENSMUSG00000094875 ENSMUST00000178061 Gm23151 snRNA Interval_24233 chr11 31684873 31685930 + 0 NA Intergenic Intergenic -13247 ENSMUSG00000103635.1 ENSMUSG00000103635 ENSMUST00000192490 Gm38061 TEC Interval_171789 chr9 121148396 121151167 + 0 NA intron (ENSMUSG00000040936.15, intron 25 of 33) protein_coding-intron (ENSMUSG00000040936.15, intron 27 of 33) -92561 ENSMUSG00000084706.1 ENSMUSG00000084706 ENSMUST00000122757 Gm22987 misc_RNA Interval_148471 chr7 81533571 81534937 + 0 NA exon (ENSMUSG00000038663.7, exon 13 of 13) protein_coding-exon (ENSMUSG00000038663.7, exon 13 of 13) -1733 ENSMUSG00000104453.1 ENSMUSG00000104453 ENSMUST00000193864 Gm37829 TEC Interval_138217 chr6 86388517 86388927 + 0 NA TTS (ENSMUSG00000029998.14) protein_coding-TTS (ENSMUSG00000029998.14) 8419 ENSMUSG00000029998.14 ENSMUSG00000029998 ENSMUST00000203960 Pcyox1 protein_coding Interval_28980 chr11 79696441 79697099 + 0 NA exon (ENSMUSG00000017639.13, exon 15 of 15) protein_coding-exon (ENSMUSG00000017639.13, exon 15 of 15) -7860 ENSMUSG00000084969.1 ENSMUSG00000084969 ENSMUST00000137738 Gm11205 lincRNA Interval_106872 chr3 101439834 101441938 + 0 NA intron (ENSMUSG00000042035.11, intron 7 of 10) protein_coding-intron (ENSMUSG00000042035.11, intron 7 of 10) -15233 ENSMUSG00000106137.1 ENSMUSG00000106137 ENSMUST00000196233 Gm42538 antisense Interval_665 chr1 9711993 9712194 + 0 NA Intergenic Intergenic -12439 ENSMUSG00000025912.16 ENSMUSG00000025912 ENSMUST00000188212 Mybl1 protein_coding Interval_86858 chr19 44407442 44408894 + 0 NA promoter-TSS (ENSMUSG00000037071.3) protein_coding-promoter-TSS (ENSMUSG00000037071.3) -1478 ENSMUSG00000037071.3 ENSMUSG00000037071 ENSMUST00000235741 Scd1 protein_coding Interval_24041 chr11 29721169 29721362 + 0 NA intron (ENSMUSG00000020458.16, intron 1 of 6) protein_coding-intron (ENSMUSG00000020458.16, intron 1 of 6) 28317 ENSMUSG00000020458.16 ENSMUSG00000020458 ENSMUST00000126162 Rtn4 protein_coding Interval_25979 chr11 53290669 53291967 + 0 NA intron (ENSMUSG00000020361.13, intron 2 of 15) protein_coding-intron (ENSMUSG00000020361.13, intron 2 of 18) 9093 ENSMUSG00000020361.13 ENSMUSG00000020361 ENSMUST00000151854 Hspa4 protein_coding Interval_115065 chr4 89148537 89148778 + 0 NA intron (ENSMUSG00000062937.7, intron 2 of 7) protein_coding-intron (ENSMUSG00000062937.7, intron 2 of 7) 13534 ENSMUSG00000083989.2 ENSMUSG00000083989 ENSMUST00000120724 Gm12607 processed_pseudogene Interval_90605 chr2 31422353 31423101 + 0 NA intron (ENSMUSG00000055632.18, intron 67 of 97) protein_coding-intron (ENSMUSG00000055632.18, intron 67 of 97) -77999 ENSMUSG00000076441.9 ENSMUSG00000076441 ENSMUST00000130195 Ass1 protein_coding Interval_77024 chr17 85715247 85716336 + 0 NA Intergenic Intergenic 22162 ENSMUSG00000117422.1 ENSMUSG00000117422 ENSMUST00000235073 CJ186046Rik lincRNA Interval_157964 chr8 77367166 77367579 + 0 NA intron (ENSMUSG00000037148.8, intron 12 of 21) protein_coding-intron (ENSMUSG00000037148.8, intron 13 of 22) 5144 ENSMUSG00000109873.1 ENSMUSG00000109873 ENSMUST00000209499 Gm45407 TEC Interval_75656 chr17 70068322 70068623 + 0 NA intron (ENSMUSG00000003279.17, intron 1 of 1) protein_coding-intron (ENSMUSG00000003279.17, intron 1 of 14) -142641 ENSMUSG00000117078.1 ENSMUSG00000117078 ENSMUST00000232868 Gm4561 processed_pseudogene Interval_71876 chr17 26675536 26677119 + 0 NA promoter-TSS (ENSMUSG00000015575.15) protein_coding-promoter-TSS (ENSMUSG00000015575.15) 170 ENSMUSG00000015575.15 ENSMUSG00000015575 ENSMUST00000167352 Atp6v0e protein_coding Interval_94589 chr2 92464837 92465057 + 0 NA Intergenic Intergenic -5238 ENSMUSG00000049922.8 ENSMUSG00000049922 ENSMUST00000136718 Slc35c1 protein_coding Interval_149820 chr7 101817870 101818683 + 0 NA promoter-TSS (ENSMUSG00000007946.11) protein_coding-promoter-TSS (ENSMUSG00000007946.11) -2470 ENSMUSG00000007946.11 ENSMUSG00000007946 ENSMUST00000209878 Phox2a protein_coding Interval_66076 chr16 31456785 31457019 + 0 NA TTS (ENSMUSG00000046598.15) protein_coding-TTS (ENSMUSG00000046598.15) -13024 ENSMUSG00000116572.1 ENSMUSG00000116572 ENSMUST00000232608 Gm49695 lincRNA Interval_134010 chr6 17696473 17697077 + 0 NA promoter-TSS (ENSMUSG00000099244.1) misc_RNA-promoter-TSS (ENSMUSG00000099244.1) -119 ENSMUSG00000099244.1 ENSMUSG00000099244 ENSMUST00000184184 Gm27542 misc_RNA Interval_40010 chr12 100470469 100470680 + 0 NA intron (ENSMUSG00000033530.8, intron 3 of 9) protein_coding-intron (ENSMUSG00000033530.8, intron 3 of 19) -4276 ENSMUSG00000033530.8 ENSMUSG00000033530 ENSMUST00000220614 Ttc7b protein_coding Interval_174227 chrX 140427790 140428506 + 0 NA exon (ENSMUSG00000042425.18, exon 14 of 15) protein_coding-exon (ENSMUSG00000042425.18, exon 14 of 15) 18234 ENSMUSG00000082031.1 ENSMUSG00000082031 ENSMUST00000117903 Gm8097 processed_pseudogene Interval_84357 chr19 10347789 10348391 + 0 NA Intergenic Intergenic -41393 ENSMUSG00000024743.16 ENSMUSG00000024743 ENSMUST00000235717 Syt7 protein_coding Interval_48168 chr13 96923221 96926755 + 0 NA intron (ENSMUSG00000091387.2, intron 1 of 2) protein_coding-intron (ENSMUSG00000091387.2, intron 1 of 2) 299 ENSMUSG00000091387.2 ENSMUSG00000091387 ENSMUST00000171324 Gcnt4 protein_coding Interval_164604 chr9 39960916 39961431 + 0 NA promoter-TSS (ENSMUSG00000047352.6) protein_coding-promoter-TSS (ENSMUSG00000047352.6) -1468 ENSMUSG00000047352.6 ENSMUSG00000047352 ENSMUST00000217360 Olfr976 protein_coding Interval_103203 chr3 36634902 36635802 + 0 NA intron (ENSMUSG00000027716.13, intron 9 of 11) protein_coding-intron (ENSMUSG00000027716.13, intron 9 of 11) 54815 ENSMUSG00000027716.13 ENSMUSG00000027716 ENSMUST00000146475 Trpc3 protein_coding Interval_63320 chr15 100291765 100292843 + 0 NA intron (ENSMUSG00000045631.10, intron 4 of 4) protein_coding-intron (ENSMUSG00000045631.10, intron 4 of 4) -4867 ENSMUSG00000116182.1 ENSMUSG00000116182 ENSMUST00000230632 Gm33666 processed_pseudogene Interval_129269 chr5 118567982 118569340 + 0 NA intron (ENSMUSG00000018076.12, intron 1 of 1) protein_coding-intron (ENSMUSG00000018076.12, intron 1 of 30) -5560 ENSMUSG00000106912.1 ENSMUSG00000106912 ENSMUST00000201036 Gm43785 TEC Interval_90661 chr2 31749187 31749892 + 0 NA intron (ENSMUSG00000026842.16, intron 2 of 11) protein_coding-intron (ENSMUSG00000026842.16, intron 1 of 10) 60421 ENSMUSG00000118600.1 ENSMUSG00000118600 ENSMUST00000239231 AL929275.1 protein_coding Interval_26782 chr11 60465537 60466359 + 0 NA intron (ENSMUSG00000020537.9, intron 11 of 12) protein_coding-intron (ENSMUSG00000020537.9, intron 11 of 12) 4441 ENSMUSG00000020537.9 ENSMUSG00000020537 ENSMUST00000155731 Drg2 protein_coding Interval_138537 chr6 89008054 89009385 + 0 NA intron (ENSMUSG00000055403.13, intron 1 of 2) lincRNA-intron (ENSMUSG00000055403.13, intron 1 of 2) 58036 ENSMUSG00000055403.13 ENSMUSG00000055403 ENSMUST00000153981 4933427D06Rik lincRNA Interval_95839 chr2 117130398 117131201 + 0 NA intron (ENSMUSG00000027351.14, intron 1 of 4) protein_coding-intron (ENSMUSG00000027351.14, intron 1 of 6) 9161 ENSMUSG00000027351.14 ENSMUSG00000027351 ENSMUST00000110901 Spred1 protein_coding Interval_54526 chr14 70473710 70474005 + 0 NA TTS (ENSMUSG00000022098.10) protein_coding-TTS (ENSMUSG00000022098.10) 12782 ENSMUSG00000022098.10 ENSMUSG00000022098 ENSMUST00000226539 Bmp1 protein_coding Interval_144518 chr7 25647605 25648035 + 0 NA intron (ENSMUSG00000060376.7, intron 1 of 8) protein_coding-intron (ENSMUSG00000060376.7, intron 1 of 8) -11371 ENSMUSG00000061286.7 ENSMUSG00000061286 ENSMUST00000205614 Exosc5 protein_coding Interval_82161 chr18 68189524 68190228 + 0 NA intron (ENSMUSG00000024544.9, intron 3 of 5) protein_coding-intron (ENSMUSG00000024544.9, intron 3 of 5) -20909 ENSMUSG00000118306.1 ENSMUSG00000118306 ENSMUST00000237336 Gm18149 processed_pseudogene Interval_3846 chr1 63575835 63576035 + 0 NA promoter-TSS (ENSMUSG00000087823.1) snRNA-promoter-TSS (ENSMUSG00000087823.1) -345 ENSMUSG00000087823.1 ENSMUSG00000087823 ENSMUST00000157198 Gm22281 snRNA Interval_19174 chr10 95298613 95300331 + 0 NA intron (ENSMUSG00000045867.10, intron 2 of 2) protein_coding-intron (ENSMUSG00000045867.10, intron 2 of 2) 15381 ENSMUSG00000112744.1 ENSMUSG00000112744 ENSMUST00000219461 Gm48880 TEC Interval_43398 chr13 30069028 30070262 + 0 NA Intergenic Intergenic 10968 ENSMUSG00000085188.1 ENSMUSG00000085188 ENSMUST00000139576 Gm11368 lincRNA Interval_103133 chr3 35765734 35766704 + 0 NA intron (ENSMUSG00000037400.17, intron 1 of 21) protein_coding-intron (ENSMUSG00000037400.17, intron 1 of 29) 30846 ENSMUSG00000064834.1 ENSMUSG00000064834 ENSMUST00000082900 Gm25696 snRNA Interval_101073 chr2 174932145 174933242 + 0 NA Intergenic Intergenic 76404 ENSMUSG00000086177.1 ENSMUSG00000086177 ENSMUST00000131690 Gm14616 lincRNA Interval_35707 chr12 28551665 28552617 + 0 NA promoter-TSS (ENSMUSG00000020633.14) protein_coding-promoter-TSS (ENSMUSG00000020633.14) 258 ENSMUSG00000020633.14 ENSMUSG00000020633 ENSMUST00000020963 Dcdc2c protein_coding Interval_30063 chr11 88954961 88956017 + 0 NA promoter-TSS (ENSMUSG00000000278.10) protein_coding-promoter-TSS (ENSMUSG00000000278.10) -24 ENSMUSG00000000278.10 ENSMUSG00000000278 ENSMUST00000000287 Scpep1 protein_coding Interval_52134 chr14 36968126 36969428 + 0 NA promoter-TSS (ENSMUSG00000058690.14) protein_coding-promoter-TSS (ENSMUSG00000058690.14) 55757 ENSMUSG00000114739.1 ENSMUSG00000114739 ENSMUST00000223806 Gm47885 processed_pseudogene Interval_163369 chr9 21115802 21116648 + 0 NA exon (ENSMUSG00000032175.11, exon 8 of 23) protein_coding-exon (ENSMUSG00000032175.11, exon 8 of 23) 15007 ENSMUSG00000032175.11 ENSMUSG00000032175 ENSMUST00000214615 Tyk2 protein_coding Interval_170145 chr9 105537054 105538480 + 0 NA Intergenic Intergenic 8060 ENSMUSG00000101464.1 ENSMUSG00000101464 ENSMUST00000187229 Gm7436 processed_pseudogene Interval_153568 chr8 3459659 3460573 + 0 NA TTS (ENSMUSG00000108955.1) TEC-TTS (ENSMUSG00000108955.1) 2077 ENSMUSG00000108955.1 ENSMUSG00000108955 ENSMUST00000207266 Gm44775 TEC Interval_117850 chr4 126609213 126610530 + 0 NA promoter-TSS (ENSMUSG00000073755.4) protein_coding-promoter-TSS (ENSMUSG00000073755.4) 17 ENSMUSG00000073755.4 ENSMUSG00000073755 ENSMUST00000164362 5730409E04Rik protein_coding Interval_82552 chr18 75117579 75118682 + 0 NA intron (ENSMUSG00000035765.10, intron 1 of 4) protein_coding-intron (ENSMUSG00000035765.10, intron 9 of 16) -7295 ENSMUSG00000035765.10 ENSMUSG00000035765 ENSMUST00000236840 Dym protein_coding Interval_8813 chr1 151353089 151353482 + 0 NA intron (ENSMUSG00000023150.14, intron 5 of 14) protein_coding-intron (ENSMUSG00000023150.14, intron 5 of 14) -7962 ENSMUSG00000023150.14 ENSMUSG00000023150 ENSMUST00000190872 Ivns1abp protein_coding Interval_51812 chr14 32379375 32380511 + 0 NA intron (ENSMUSG00000072473.4, intron 1 of 2) protein_coding-intron (ENSMUSG00000072473.4, intron 1 of 2) 8448 ENSMUSG00000072473.4 ENSMUSG00000072473 ENSMUST00000100723 1700024G13Rik protein_coding Interval_27982 chr11 71874537 71874822 + 0 NA Intergenic Intergenic -26473 ENSMUSG00000077456.1 ENSMUSG00000077456 ENSMUST00000104268 Gm22927 snoRNA Interval_171312 chr9 116292328 116293568 + 0 NA Intergenic Intergenic -38220 ENSMUSG00000110752.1 ENSMUSG00000110752 ENSMUST00000217456 D730003K21Rik lincRNA Interval_85129 chr19 23071248 23071457 + 0 NA intron (ENSMUSG00000097930.2, intron 1 of 6) lincRNA-intron (ENSMUSG00000097930.2, intron 1 of 6) 4572 ENSMUSG00000097930.2 ENSMUSG00000097930 ENSMUST00000181623 C330002G04Rik lincRNA Interval_36915 chr12 55321193 55322367 + 0 NA intron (ENSMUSG00000021023.14, intron 3 of 6) protein_coding-intron (ENSMUSG00000021023.14, intron 3 of 6) 22203 ENSMUSG00000021023.14 ENSMUSG00000021023 ENSMUST00000183654 Prorp protein_coding Interval_39455 chr12 87548104 87549393 + 0 NA Intergenic Intergenic -5497 ENSMUSG00000113803.1 ENSMUSG00000113803 ENSMUST00000222919 Gm18615 processed_pseudogene Interval_121052 chr4 152447931 152449036 + 0 NA intron (ENSMUSG00000028931.12, intron 1 of 16) protein_coding-intron (ENSMUSG00000028931.12, intron 1 of 14) 28956 ENSMUSG00000028931.12 ENSMUSG00000028931 ENSMUST00000162017 Kcnab2 protein_coding Interval_40580 chr12 105829176 105830077 + 0 NA TTS (ENSMUSG00000021111.15) protein_coding-TTS (ENSMUSG00000021111.15) 559 ENSMUSG00000021111.15 ENSMUSG00000021111 ENSMUST00000172089 Papola protein_coding Interval_168939 chr9 89227583 89228086 + 0 NA TTS (ENSMUSG00000066442.17) protein_coding-TTS (ENSMUSG00000066442.17) 28455 ENSMUSG00000100838.1 ENSMUSG00000100838 ENSMUST00000138109 Gm29094 protein_coding Interval_46170 chr13 62181613 62183478 + 0 NA intron (ENSMUSG00000074867.4, intron 1 of 3) protein_coding-intron (ENSMUSG00000074867.4, intron 1 of 4) 31375 ENSMUSG00000113690.1 ENSMUSG00000113690 ENSMUST00000221857 Gm36501 processed_pseudogene Interval_85952 chr19 34105558 34105790 + 0 NA intron (ENSMUSG00000056078.6, intron 2 of 8) protein_coding-intron (ENSMUSG00000056078.6, intron 2 of 9) 4741 ENSMUSG00000056078.6 ENSMUSG00000056078 ENSMUST00000235239 Lipm protein_coding Interval_35889 chr12 31631354 31631560 + 0 NA intron (ENSMUSG00000020650.15, intron 2 of 7) protein_coding-intron (ENSMUSG00000020650.15, intron 1 of 6) 23319 ENSMUSG00000020648.3 ENSMUSG00000020648 ENSMUST00000219855 Dus4l protein_coding Interval_3744 chr1 62722442 62723928 + 0 NA intron (ENSMUSG00000025969.15, intron 2 of 2) protein_coding-intron (ENSMUSG00000025969.15, intron 2 of 15) -5112 ENSMUSG00000100811.1 ENSMUSG00000100811 ENSMUST00000189205 Gm29083 antisense Interval_4888 chr1 81577674 81577962 + 0 NA Intergenic Intergenic -20335 ENSMUSG00000101986.1 ENSMUSG00000101986 ENSMUST00000191337 Gm6198 processed_pseudogene Interval_53840 chr14 62573551 62573903 + 0 NA intron (ENSMUSG00000035184.15, intron 2 of 2) protein_coding-intron (ENSMUSG00000035184.15, intron 2 of 3) -6806 ENSMUSG00000100486.7 ENSMUSG00000100486 ENSMUST00000209021 Gm4131 protein_coding Interval_141217 chr6 125689918 125690959 + 0 NA promoter-TSS (ENSMUSG00000038115.16) protein_coding-promoter-TSS (ENSMUSG00000038115.16) -20188 ENSMUSG00000038115.16 ENSMUSG00000038115 ENSMUST00000159984 Ano2 protein_coding Interval_30369 chr11 93918805 93919037 + 0 NA exon (ENSMUSG00000059474.13, exon 2 of 11) protein_coding-exon (ENSMUSG00000059474.13, exon 2 of 11) -6619 ENSMUSG00000059474.13 ENSMUSG00000059474 ENSMUST00000155841 Mbtd1 protein_coding Interval_110311 chr3 156576065 156577141 + 0 NA intron (ENSMUSG00000040037.13, intron 1 of 6) protein_coding-intron (ENSMUSG00000040037.13, intron 1 of 6) 14457 ENSMUSG00000040037.13 ENSMUSG00000040037 ENSMUST00000175773 Negr1 protein_coding Interval_140902 chr6 122669299 122670544 + 0 NA Intergenic Intergenic -26080 ENSMUSG00000072789.4 ENSMUSG00000072789 ENSMUST00000121713 Gm10420 processed_pseudogene Interval_159098 chr8 90508579 90508751 + 0 NA Intergenic Intergenic -160534 ENSMUSG00000043668.13 ENSMUSG00000043668 ENSMUST00000176034 Tox3 protein_coding Interval_94431 chr2 91167523 91167877 + 0 NA TTS (ENSMUSG00000040687.16) protein_coding-TTS (ENSMUSG00000040687.16) 27325 ENSMUSG00000002108.10 ENSMUSG00000002108 ENSMUST00000136234 Nr1h3 protein_coding Interval_63590 chr15 102224189 102225275 + 0 NA TTS (ENSMUSG00000001281.10) protein_coding-TTS (ENSMUSG00000001281.10) 7176 ENSMUSG00000001281.10 ENSMUSG00000001281 ENSMUST00000127014 Itgb7 protein_coding Interval_24351 chr11 32613660 32615769 + 0 NA intron (ENSMUSG00000020272.8, intron 16 of 18) protein_coding-intron (ENSMUSG00000020272.8, intron 16 of 18) 26119 ENSMUSG00000020272.8 ENSMUSG00000020272 ENSMUST00000143397 Stk10 protein_coding Interval_161541 chr8 121089165 121090222 + 0 NA intron (ENSMUSG00000092329.1, intron 1 of 15) protein_coding-intron (ENSMUSG00000092329.1, intron 1 of 15) -4987 ENSMUSG00000098560.1 ENSMUSG00000098560 ENSMUST00000184096 Gm27530 miRNA Interval_26227 chr11 55272960 55273287 + 0 NA exon (ENSMUSG00000055333.14, exon 13 of 24) protein_coding-exon (ENSMUSG00000055333.14, exon 13 of 24) 39134 ENSMUSG00000055333.14 ENSMUSG00000055333 ENSMUST00000108864 Fat2 protein_coding Interval_46473 chr13 66435822 66436091 + 0 NA intron (ENSMUSG00000074832.11, intron 1 of 4) protein_coding-intron (ENSMUSG00000074832.11, intron 1 of 3) 5162 ENSMUSG00000074832.11 ENSMUSG00000074832 ENSMUST00000172579 2410141K09Rik protein_coding Interval_37177 chr12 59193768 59194250 + 0 NA Intergenic Intergenic 10427 ENSMUSG00000035329.7 ENSMUSG00000035329 ENSMUST00000161351 Fbxo33 protein_coding Interval_77612 chr17 93084305 93084658 + 0 NA Intergenic Intergenic -84031 ENSMUSG00000117591.1 ENSMUSG00000117591 ENSMUST00000234088 Gm49997 processed_pseudogene Interval_106368 chr3 95673754 95677086 + 0 NA TTS (ENSMUSG00000015850.11) protein_coding-TTS (ENSMUSG00000015850.11) 1731 ENSMUSG00000015850.11 ENSMUSG00000015850 ENSMUST00000148854 Adamtsl4 protein_coding Interval_120005 chr4 141329711 141330612 + 0 NA TTS (ENSMUSG00000006445.3) protein_coding-TTS (ENSMUSG00000006445.3) 13248 ENSMUSG00000006445.3 ENSMUSG00000006445 ENSMUST00000149002 Epha2 protein_coding Interval_78796 chr18 20681418 20683108 + 0 NA TTS (ENSMUSG00000091449.3) processed_pseudogene-TTS (ENSMUSG00000091449.3) 700 ENSMUSG00000091449.3 ENSMUSG00000091449 ENSMUST00000165229 Gm10269 processed_pseudogene Interval_168474 chr9 81637530 81638291 + 0 NA intron (ENSMUSG00000097466.8, intron 2 of 3) antisense-intron (ENSMUSG00000097466.8, intron 2 of 3) -4082 ENSMUSG00000049511.5 ENSMUSG00000049511 ENSMUST00000051005 Htr1b protein_coding Interval_19815 chr10 109550238 109550546 + 0 NA Intergenic Intergenic -98387 ENSMUSG00000112260.1 ENSMUSG00000112260 ENSMUST00000219153 3110043J17Rik TEC Interval_169785 chr9 101270415 101271285 + 0 NA Intergenic Intergenic 10923 ENSMUSG00000101001.1 ENSMUSG00000101001 ENSMUST00000187086 Gm3121 processed_pseudogene Interval_58725 chr15 37365110 37365954 + 0 NA TTS (ENSMUSG00000051359.15) protein_coding-TTS (ENSMUSG00000051359.15) -1673 ENSMUSG00000101671.1 ENSMUSG00000101671 ENSMUST00000185617 Gm28221 antisense Interval_66543 chr16 35000710 35001633 + 0 NA exon (ENSMUSG00000022836.11, exon 32 of 32) protein_coding-exon (ENSMUSG00000022836.11, exon 32 of 32) 21729 ENSMUSG00000116840.1 ENSMUSG00000116840 ENSMUST00000232358 Gm21691 antisense Interval_67811 chr16 57380390 57380631 + 0 NA intron (ENSMUSG00000043336.14, intron 1 of 4) protein_coding-intron (ENSMUSG00000043336.14, intron 1 of 4) 27417 ENSMUSG00000043336.14 ENSMUSG00000043336 ENSMUST00000159414 Filip1l protein_coding Interval_147862 chr7 74383834 74384078 + 0 NA intron (ENSMUSG00000025790.14, intron 1 of 1) protein_coding-intron (ENSMUSG00000025790.14, intron 2 of 9) -8742 ENSMUSG00000085161.1 ENSMUSG00000085161 ENSMUST00000132826 Gm7580 antisense Interval_21582 chr10 130282134 130282565 + 0 NA Intergenic Intergenic -2109 ENSMUSG00000048015.4 ENSMUSG00000048015 ENSMUST00000061571 Neurod4 protein_coding Interval_20873 chr10 121657217 121657878 + 0 NA intron (ENSMUSG00000047642.15, intron 3 of 13) protein_coding-intron (ENSMUSG00000047642.15, intron 2 of 12) 15959 ENSMUSG00000047642.15 ENSMUSG00000047642 ENSMUST00000132744 D930020B18Rik protein_coding Interval_138328 chr6 87262191 87263184 + 0 NA intron (ENSMUSG00000033420.12, intron 2 of 6) protein_coding-intron (ENSMUSG00000033420.12, intron 9 of 17) -7079 ENSMUSG00000107865.1 ENSMUSG00000107865 ENSMUST00000203298 Gm44417 TEC Interval_170571 chr9 108765069 108765491 + 0 NA Intergenic Intergenic -18585 ENSMUSG00000032599.12 ENSMUSG00000032599 ENSMUST00000193970 Ip6k2 protein_coding Interval_33126 chr11 114618544 114619924 + 0 NA Intergenic Intergenic -45374 ENSMUSG00000083769.1 ENSMUSG00000083769 ENSMUST00000120766 Gm11689 processed_pseudogene Interval_162820 chr9 9547088 9547453 + 0 NA intron (ENSMUSG00000111061.1, intron 1 of 3) lincRNA-intron (ENSMUSG00000111061.1, intron 1 of 3) -16817 ENSMUSG00000111284.1 ENSMUSG00000111284 ENSMUST00000215363 Gm47334 lincRNA Interval_92328 chr2 58794790 58795046 + 0 NA Intergenic Intergenic 54279 ENSMUSG00000080985.1 ENSMUSG00000080985 ENSMUST00000120476 Gm13559 processed_pseudogene Interval_58146 chr15 29427098 29427340 + 0 NA Intergenic Intergenic 286185 ENSMUSG00000092639.1 ENSMUSG00000092639 ENSMUST00000174898 Mir3964 miRNA Interval_137872 chr6 83068133 83071716 + 0 NA exon (ENSMUSG00000068327.5, exon 1 of 3) protein_coding-exon (ENSMUSG00000068327.5, exon 1 of 3) 301 ENSMUSG00000068327.5 ENSMUSG00000068327 ENSMUST00000089641 Tlx2 protein_coding Interval_107342 chr3 106000650 106001971 + 0 NA promoter-TSS (ENSMUSG00000106093.1) antisense-promoter-TSS (ENSMUSG00000106093.1) 187 ENSMUSG00000010136.14 ENSMUSG00000010136 ENSMUST00000066319 Pifo protein_coding Interval_115989 chr4 106837930 106840509 + 0 NA Intergenic Intergenic 8701 ENSMUSG00000086940.1 ENSMUSG00000086940 ENSMUST00000151369 Gm12746 lincRNA Interval_18331 chr10 84986152 84988206 + 0 NA intron (ENSMUSG00000035620.15, intron 6 of 7) protein_coding-intron (ENSMUSG00000035620.15, intron 7 of 9) 49786 ENSMUSG00000035620.15 ENSMUSG00000035620 ENSMUST00000214820 Ric8b protein_coding Interval_131082 chr5 134973009 134974252 + 0 NA Intergenic Intergenic -12584 ENSMUSG00000070473.4 ENSMUSG00000070473 ENSMUST00000094245 Cldn3 protein_coding Interval_30904 chr11 97163934 97164413 + 0 NA promoter-TSS (ENSMUSG00000001440.5) protein_coding-promoter-TSS (ENSMUSG00000001440.5) 1227 ENSMUSG00000001440.5 ENSMUSG00000001440 ENSMUST00000153727 Kpnb1 protein_coding Interval_51728 chr14 31671766 31672238 + 0 NA Intergenic Intergenic 30974 ENSMUSG00000021900.10 ENSMUSG00000021900 ENSMUST00000090147 Btd protein_coding Interval_105819 chr3 89499894 89500133 + 0 NA Intergenic Intergenic 45472 ENSMUSG00000027952.16 ENSMUSG00000027952 ENSMUST00000184515 Pmvk protein_coding Interval_39022 chr12 84524663 84526283 + 0 NA intron (ENSMUSG00000085793.2, intron 4 of 4) protein_coding-intron (ENSMUSG00000085793.2, intron 5 of 5) -4571 ENSMUSG00000085793.2 ENSMUSG00000085793 ENSMUST00000222741 Lin52 protein_coding Interval_73190 chr17 35496518 35497630 + 0 NA Intergenic Intergenic -11747 ENSMUSG00000024406.16 ENSMUSG00000024406 ENSMUST00000174782 Pou5f1 protein_coding Interval_62575 chr15 94803070 94803380 + 0 NA intron (ENSMUSG00000063296.5, intron 3 of 7) protein_coding-intron (ENSMUSG00000063296.5, intron 3 of 7) -121839 ENSMUSG00000095169.1 ENSMUSG00000095169 ENSMUST00000103977 Gm25546 snoRNA Interval_151100 chr7 118548873 118549550 + 0 NA intron (ENSMUSG00000042246.5, intron 9 of 10) protein_coding-intron (ENSMUSG00000042246.5, intron 9 of 15) -15914 ENSMUSG00000030652.11 ENSMUSG00000030652 ENSMUST00000127700 Coq7 protein_coding Interval_36280 chr12 40593969 40594383 + 0 NA intron (ENSMUSG00000035954.10, intron 1 of 5) protein_coding-intron (ENSMUSG00000035954.10, intron 1 of 52) 148093 ENSMUSG00000035954.10 ENSMUSG00000035954 ENSMUST00000220850 Dock4 protein_coding Interval_51922 chr14 33951531 33951878 + 0 NA Intergenic Intergenic -2299 ENSMUSG00000041534.9 ENSMUSG00000041534 ENSMUST00000035695 Rbp3 protein_coding Interval_77821 chr18 4084032 4084222 + 0 NA Intergenic Intergenic -31591 ENSMUSG00000117565.1 ENSMUSG00000117565 ENSMUST00000234182 Gm6248 processed_pseudogene Interval_135181 chr6 37335607 37337623 + 0 NA promoter-TSS (ENSMUSG00000038648.5) protein_coding-promoter-TSS (ENSMUSG00000038648.5) -80 ENSMUSG00000038648.5 ENSMUSG00000038648 ENSMUST00000128534 Creb3l2 protein_coding Interval_36453 chr12 45045732 45046053 + 0 NA intron (ENSMUSG00000046314.16, intron 1 of 1) protein_coding-intron (ENSMUSG00000046314.16, intron 1 of 5) 28334 ENSMUSG00000046314.16 ENSMUSG00000046314 ENSMUST00000218249 Stxbp6 protein_coding Interval_147452 chr7 67387577 67387868 + 0 NA Intergenic Intergenic -16742 ENSMUSG00000109363.1 ENSMUSG00000109363 ENSMUST00000207911 Gm44668 TEC Interval_22007 chr11 5740644 5741544 + 0 NA promoter-TSS (ENSMUSG00000049680.17) protein_coding-promoter-TSS (ENSMUSG00000049680.17) -21056 ENSMUSG00000083844.8 ENSMUSG00000083844 ENSMUST00000135394 Ube2d-ps transcribed_unprocessed_pseudogene Interval_1877 chr1 34250668 34251274 + 0 NA intron (ENSMUSG00000026131.20, intron 7 of 22) protein_coding-intron (ENSMUSG00000026131.20, intron 62 of 97) 20157 ENSMUSG00000103001.1 ENSMUSG00000103001 ENSMUST00000194920 A930005N03Rik TEC Interval_161831 chr8 123087470 123087969 + 0 NA intron (ENSMUSG00000000738.18, intron 6 of 6) protein_coding-intron (ENSMUSG00000000738.18, intron 10 of 16) -6802 ENSMUSG00000000738.18 ENSMUSG00000000738 ENSMUST00000212364 Spg7 protein_coding Interval_30862 chr11 96943636 96944569 + 0 NA promoter-TSS (ENSMUSG00000018659.12) protein_coding-promoter-TSS (ENSMUSG00000018659.12) -210 ENSMUSG00000078700.10 ENSMUSG00000078700 ENSMUST00000186326 D030028A08Rik processed_transcript Interval_13883 chr10 24213428 24214210 + 0 NA Intergenic Intergenic -9726 ENSMUSG00000020000.7 ENSMUSG00000020000 ENSMUST00000154916 Moxd1 protein_coding Interval_120425 chr4 148542021 148542979 + 0 NA intron (ENSMUSG00000028991.15, intron 46 of 57) protein_coding-intron (ENSMUSG00000028991.15, intron 46 of 57) -1913 ENSMUSG00000028991.15 ENSMUSG00000028991 ENSMUST00000129715 Mtor protein_coding Interval_51743 chr14 31856851 31857851 + 0 NA Intergenic Intergenic -20170 ENSMUSG00000093191.2 ENSMUSG00000093191 ENSMUST00000175450 Gm22876 misc_RNA Interval_117795 chr4 126262134 126262680 + 0 NA promoter-TSS (ENSMUSG00000028847.8) protein_coding-promoter-TSS (ENSMUSG00000028847.8) 7 ENSMUSG00000028847.8 ENSMUSG00000028847 ENSMUST00000126786 Trappc3 protein_coding Interval_160091 chr8 106311583 106312152 + 0 NA intron (ENSMUSG00000031906.9, intron 1 of 8) protein_coding-intron (ENSMUSG00000031906.9, intron 1 of 8) 28560 ENSMUSG00000074113.4 ENSMUSG00000074113 ENSMUST00000137706 Gm10629 lincRNA Interval_162796 chr9 9180877 9181333 + 0 NA intron (ENSMUSG00000050730.17, intron 1 of 5) protein_coding-intron (ENSMUSG00000050730.17, intron 1 of 22) -55183 ENSMUSG00000085253.3 ENSMUSG00000085253 ENSMUST00000150263 Gm16833 antisense Interval_64238 chr16 9617396 9618575 + 0 NA intron (ENSMUSG00000059003.12, intron 11 of 13) protein_coding-intron (ENSMUSG00000059003.12, intron 9 of 11) 376938 ENSMUSG00000059003.12 ENSMUSG00000059003 ENSMUST00000197242 Grin2a protein_coding Interval_164281 chr9 34988235 34988694 + 0 NA intron (ENSMUSG00000032036.15, intron 4 of 13) protein_coding-intron (ENSMUSG00000032036.15, intron 5 of 16) 28445 ENSMUSG00000089465.1 ENSMUSG00000089465 ENSMUST00000158840 Gm23702 rRNA Interval_1800 chr1 33864283 33864503 + 0 NA intron (ENSMUSG00000042182.16, intron 3 of 3) protein_coding-intron (ENSMUSG00000042182.16, intron 4 of 6) 19087 ENSMUSG00000042182.16 ENSMUSG00000042182 ENSMUST00000139700 Bend6 protein_coding Interval_100087 chr2 167004252 167005052 + 0 NA Intergenic Intergenic 4387 ENSMUSG00000082665.1 ENSMUSG00000082665 ENSMUST00000118868 Gm11470 processed_pseudogene Interval_30634 chr11 95583432 95583668 + 0 NA intron (ENSMUSG00000000120.6, intron 1 of 5) protein_coding-intron (ENSMUSG00000000120.6, intron 1 of 5) 4185 ENSMUSG00000000120.6 ENSMUSG00000000120 ENSMUST00000000122 Ngfr protein_coding Interval_117116 chr4 119667283 119667984 + 0 NA Intergenic Intergenic -8852 ENSMUSG00000032978.14 ENSMUSG00000032978 ENSMUST00000044426 Guca2b protein_coding Interval_90347 chr2 29908487 29909214 + 0 NA intron (ENSMUSG00000026790.19, intron 8 of 19) protein_coding-intron (ENSMUSG00000026790.19, intron 8 of 16) 19052 ENSMUSG00000026790.19 ENSMUSG00000026790 ENSMUST00000152026 Odf2 protein_coding Interval_68112 chr16 65215234 65215505 + 0 NA Intergenic Intergenic -18920 ENSMUSG00000116833.1 ENSMUSG00000116833 ENSMUST00000232619 Gm9584 processed_pseudogene Interval_114543 chr4 82405704 82406233 + 0 NA intron (ENSMUSG00000008575.17, intron 2 of 4) protein_coding-intron (ENSMUSG00000008575.17, intron 2 of 11) -33442 ENSMUSG00000084595.1 ENSMUSG00000084595 ENSMUST00000122646 n-R5s188 rRNA Interval_97475 chr2 137073817 137075496 + 0 NA Intergenic Intergenic 11293 ENSMUSG00000027276.7 ENSMUSG00000027276 ENSMUST00000133640 Jag1 protein_coding Interval_93033 chr2 69676815 69677143 + 0 NA intron (ENSMUSG00000075307.3, intron 3 of 5) protein_coding-intron (ENSMUSG00000075307.3, intron 3 of 5) 6859 ENSMUSG00000075307.3 ENSMUSG00000075307 ENSMUST00000100050 Klhl41 protein_coding Interval_162019 chr8 124476994 124477799 + 0 NA Intergenic Intergenic -37738 ENSMUSG00000050751.14 ENSMUSG00000050751 ENSMUST00000140126 Pgbd5 protein_coding Interval_136084 chr6 50566047 50567172 + 0 NA promoter-TSS (ENSMUSG00000063694.5) protein_coding-promoter-TSS (ENSMUSG00000063694.5) -34 ENSMUSG00000085776.8 ENSMUSG00000085776 ENSMUST00000126537 5430402O13Rik antisense Interval_88380 chr2 4587244 4587982 + 0 NA promoter-TSS (ENSMUSG00000086018.7) antisense-promoter-TSS (ENSMUSG00000086018.7) -326 ENSMUSG00000086018.7 ENSMUSG00000086018 ENSMUST00000137801 Gm13179 antisense Interval_87366 chr19 47966181 47966649 + 0 NA intron (ENSMUSG00000046585.9, intron 9 of 17) protein_coding-intron (ENSMUSG00000046585.9, intron 9 of 17) 28740 ENSMUSG00000046585.9 ENSMUSG00000046585 ENSMUST00000066308 Cfap58 protein_coding Interval_43790 chr13 36461281 36461565 + 0 NA intron (ENSMUSG00000021420.13, intron 6 of 7) protein_coding-intron (ENSMUSG00000021420.13, intron 6 of 6) -2143 ENSMUSG00000114714.1 ENSMUSG00000114714 ENSMUST00000224213 Gm48763 TEC Interval_157735 chr8 72591471 72591660 + 0 NA Intergenic Intergenic 19510 ENSMUSG00000031791.8 ENSMUSG00000031791 ENSMUST00000211914 Tmem38a protein_coding Interval_36144 chr12 36317003 36317673 + 0 NA exon (ENSMUSG00000036169.6, exon 2 of 2) protein_coding-exon (ENSMUSG00000036169.6, exon 2 of 2) 3199 ENSMUSG00000036169.6 ENSMUSG00000036169 ENSMUST00000041407 Sostdc1 protein_coding Interval_6411 chr1 107384640 107385083 + 0 NA TTS (ENSMUSG00000087210.1) lincRNA-TTS (ENSMUSG00000087210.1) 2551 ENSMUSG00000087210.1 ENSMUSG00000087210 ENSMUST00000147509 Gm15391 lincRNA Interval_142041 chr6 136699817 136700024 + 0 NA intron (ENSMUSG00000042638.14, intron 24 of 25) protein_coding-intron (ENSMUSG00000042638.14, intron 25 of 26) -4637 ENSMUSG00000107850.1 ENSMUSG00000107850 ENSMUST00000203395 Gm4714 processed_pseudogene Interval_11790 chr1 185460180 185460385 + 0 NA intron (ENSMUSG00000026614.7, intron 2 of 3) protein_coding-intron (ENSMUSG00000026614.7, intron 2 of 3) -4714 ENSMUSG00000097615.1 ENSMUSG00000097615 ENSMUST00000180623 Gm2061 antisense Interval_44381 chr13 44469222 44469515 + 0 NA TTS (ENSMUSG00000098144.8) lincRNA-TTS (ENSMUSG00000098144.8) -14065 ENSMUSG00000098107.1 ENSMUSG00000098107 ENSMUST00000183264 Gm27007 lincRNA Interval_92279 chr2 58028239 58030480 + 0 NA intron (ENSMUSG00000026828.11, intron 7 of 10) protein_coding-intron (ENSMUSG00000026828.11, intron 7 of 9) 23505 ENSMUSG00000026830.9 ENSMUSG00000026830 ENSMUST00000090940 Ermn protein_coding Interval_93856 chr2 77520081 77520305 + 0 NA promoter-TSS (ENSMUSG00000027016.17) protein_coding-promoter-TSS (ENSMUSG00000027016.17) 57524 ENSMUSG00000085845.7 ENSMUSG00000085845 ENSMUST00000126572 Gm13944 antisense Interval_61236 chr15 80143743 80144261 + 0 NA intron (ENSMUSG00000022414.8, intron 1 of 1) protein_coding-intron (ENSMUSG00000022414.8, intron 1 of 10) 10875 ENSMUSG00000022414.8 ENSMUSG00000022414 ENSMUST00000229320 Tab1 protein_coding Interval_133568 chr6 6878345 6879712 + 0 NA intron (ENSMUSG00000029755.10, intron 2 of 2) protein_coding-intron (ENSMUSG00000029755.10, intron 2 of 2) 3054 ENSMUSG00000029755.10 ENSMUSG00000029755 ENSMUST00000204014 Dlx5 protein_coding Interval_165688 chr9 50980303 50982457 + 0 NA intron (ENSMUSG00000037112.16, intron 3 of 3) protein_coding-intron (ENSMUSG00000037112.16, intron 3 of 15) 27620 ENSMUSG00000037112.16 ENSMUSG00000037112 ENSMUST00000176327 Sik2 protein_coding Interval_104978 chr3 79459270 79459511 + 0 NA TTS (ENSMUSG00000061175.12) protein_coding-TTS (ENSMUSG00000061175.12) 72486 ENSMUSG00000061175.12 ENSMUSG00000061175 ENSMUST00000139171 Fnip2 protein_coding Interval_69643 chr16 94798096 94799152 + 0 NA intron (ENSMUSG00000043301.16, intron 3 of 3) protein_coding-intron (ENSMUSG00000043301.16, intron 3 of 4) 58048 ENSMUSG00000043301.16 ENSMUSG00000043301 ENSMUST00000231744 Kcnj6 protein_coding Interval_95945 chr2 118597784 118599362 + 0 NA intron (ENSMUSG00000040084.9, intron 1 of 22) protein_coding-intron (ENSMUSG00000040084.9, intron 1 of 22) 4494 ENSMUSG00000080747.1 ENSMUSG00000080747 ENSMUST00000119095 Gm14016 processed_pseudogene Interval_110782 chr4 8336651 8337221 + 0 NA Intergenic Intergenic -97895 ENSMUSG00000041261.9 ENSMUSG00000041261 ENSMUST00000066674 Car8 protein_coding Interval_38088 chr12 75579436 75579663 + 0 NA promoter-TSS (ENSMUSG00000112459.1) antisense-promoter-TSS (ENSMUSG00000112459.1) -316 ENSMUSG00000112459.1 ENSMUSG00000112459 ENSMUST00000219909 Gm47689 antisense Interval_82225 chr18 69394827 69397105 + 0 NA intron (ENSMUSG00000053477.17, intron 1 of 6) protein_coding-intron (ENSMUSG00000053477.17, intron 3 of 20) -126484 ENSMUSG00000053477.17 ENSMUSG00000053477 ENSMUST00000136019 Tcf4 protein_coding Interval_164650 chr9 40330599 40333945 + 0 NA intron (ENSMUSG00000040111.17, intron 2 of 18) protein_coding-intron (ENSMUSG00000040111.17, intron 3 of 19) -1202 ENSMUSG00000087047.8 ENSMUSG00000087047 ENSMUST00000156511 1700110K17Rik antisense Interval_152482 chr7 133358865 133359062 + 0 NA Intergenic Intergenic -25762 ENSMUSG00000109619.1 ENSMUSG00000109619 ENSMUST00000209700 Gm45672 lincRNA Interval_96826 chr2 128642393 128642831 + 0 NA exon (ENSMUSG00000014355.10, exon 28 of 48) protein_coding-exon (ENSMUSG00000014355.10, exon 28 of 48) -13973 ENSMUSG00000014355.10 ENSMUSG00000014355 ENSMUST00000110332 Anapc1 protein_coding Interval_27219 chr11 64203281 64203830 + 0 NA Intergenic Intergenic 38982 ENSMUSG00000087622.1 ENSMUSG00000087622 ENSMUST00000145095 Gm12290 lincRNA Interval_129240 chr5 118393816 118394608 + 0 NA Intergenic Intergenic 3118 ENSMUSG00000106812.1 ENSMUSG00000106812 ENSMUST00000201179 Gm28563 lincRNA Interval_7354 chr1 130377532 130377983 + 0 NA Intergenic Intergenic 44983 ENSMUSG00000026401.15 ENSMUSG00000026401 ENSMUST00000136497 Cd55b protein_coding Interval_157639 chr8 71960295 71960588 + 0 NA intron (ENSMUSG00000052446.17, intron 1 of 3) protein_coding-intron (ENSMUSG00000052446.17, intron 1 of 3) 6994 ENSMUSG00000052446.17 ENSMUSG00000052446 ENSMUST00000151168 Zfp961 protein_coding Interval_142126 chr6 137455383 137456196 + 0 NA intron (ENSMUSG00000030223.14, intron 13 of 14) protein_coding-intron (ENSMUSG00000030223.14, intron 25 of 26) 24484 ENSMUSG00000107759.1 ENSMUSG00000107759 ENSMUST00000204925 Gm44258 sense_intronic Interval_169059 chr9 91364040 91366290 + 0 NA exon (ENSMUSG00000032368.14, exon 1 of 3) protein_coding-exon (ENSMUSG00000032368.14, exon 1 of 3) -2111 ENSMUSG00000032368.14 ENSMUSG00000032368 ENSMUST00000173121 Zic1 protein_coding Interval_149212 chr7 96300684 96302282 + 0 NA intron (ENSMUSG00000048078.16, intron 1 of 32) protein_coding-intron (ENSMUSG00000048078.16, intron 1 of 32) -4184 ENSMUSG00000099030.1 ENSMUSG00000099030 ENSMUST00000184738 Mir6394 miRNA Interval_52776 chr14 49782825 49783944 + 0 NA promoter-TSS (ENSMUSG00000036242.15) protein_coding-promoter-TSS (ENSMUSG00000036242.15) -4900 ENSMUSG00000088938.1 ENSMUSG00000088938 ENSMUST00000158313 Gm22989 snRNA Interval_136556 chr6 55551006 55551946 + 0 NA Intergenic Intergenic 17970 ENSMUSG00000104746.1 ENSMUSG00000104746 ENSMUST00000196358 Gm44352 miRNA Interval_81994 chr18 66975549 66976856 + 0 NA exon (ENSMUSG00000117798.1, exon 2 of 2) lincRNA-exon (ENSMUSG00000117798.1, exon 2 of 2) 2037 ENSMUSG00000117798.1 ENSMUSG00000117798 ENSMUST00000237275 Gm50164 lincRNA Interval_114786 chr4 85258507 85258816 + 0 NA intron (ENSMUSG00000028488.15, intron 1 of 7) protein_coding-intron (ENSMUSG00000028488.15, intron 1 of 8) -12899 ENSMUSG00000081862.1 ENSMUSG00000081862 ENSMUST00000121508 Gm12413 processed_pseudogene Interval_54715 chr14 73524664 73525362 + 0 NA promoter-TSS (ENSMUSG00000022110.13) protein_coding-promoter-TSS (ENSMUSG00000022110.13) 198 ENSMUSG00000033405.4 ENSMUSG00000033405 ENSMUST00000226903 Nudt15 protein_coding Interval_169156 chr9 94674423 94675285 + 0 NA intron (ENSMUSG00000031129.9, intron 1 of 4) protein_coding-intron (ENSMUSG00000031129.9, intron 1 of 15) 4922 ENSMUSG00000031129.9 ENSMUSG00000031129 ENSMUST00000162329 Slc9a9 protein_coding Interval_170002 chr9 103550645 103551267 + 0 NA intron (ENSMUSG00000042757.16, intron 3 of 3) protein_coding-intron (ENSMUSG00000042757.16, intron 2 of 4) -6134 ENSMUSG00000099616.1 ENSMUSG00000099616 ENSMUST00000190332 4932413F04Rik antisense Interval_144814 chr7 28399768 28400733 + 0 NA TTS (ENSMUSG00000003437.14) protein_coding-TTS (ENSMUSG00000003437.14) 5487 ENSMUSG00000003437.14 ENSMUSG00000003437 ENSMUST00000146913 Paf1 protein_coding Interval_106590 chr3 97555151 97556423 + 0 NA Intergenic Intergenic -54145 ENSMUSG00000105004.1 ENSMUSG00000105004 ENSMUST00000198613 Gm43075 TEC Interval_69517 chr16 94000932 94002139 + 0 NA intron (ENSMUSG00000047109.13, intron 1 of 2) protein_coding-intron (ENSMUSG00000047109.13, intron 1 of 2) -9906 ENSMUSG00000116947.1 ENSMUSG00000116947 ENSMUST00000231382 2410003I16Rik lincRNA Interval_132753 chr5 147607640 147608929 + 0 NA intron (ENSMUSG00000029648.13, intron 2 of 2) protein_coding-intron (ENSMUSG00000029648.13, intron 15 of 29) 38523 ENSMUSG00000029648.13 ENSMUSG00000029648 ENSMUST00000031652 Flt1 protein_coding Interval_14989 chr10 41745216 41745419 + 0 NA exon (ENSMUSG00000019813.16, exon 2 of 2) protein_coding-exon (ENSMUSG00000019813.16, exon 2 of 2) -1404 ENSMUSG00000102114.2 ENSMUSG00000102114 ENSMUST00000190793 BC048559 antisense Interval_131292 chr5 136201810 136202286 + 0 NA Intergenic Intergenic -3085 ENSMUSG00000039737.11 ENSMUSG00000039737 ENSMUST00000149151 Prkrip1 protein_coding Interval_59170 chr15 46012451 46012950 + 0 NA Intergenic Intergenic -32663 ENSMUSG00000096157.2 ENSMUSG00000096157 ENSMUST00000178604 Gm5472 processed_pseudogene Interval_105582 chr3 87892901 87894576 + 0 NA Intergenic Intergenic -8130 ENSMUSG00000004895.9 ENSMUSG00000004895 ENSMUST00000005015 Prcc protein_coding Interval_81184 chr18 56018246 56018487 + 0 NA Intergenic Intergenic -30839 ENSMUSG00000088617.1 ENSMUSG00000088617 ENSMUST00000157992 Gm22484 misc_RNA Interval_78941 chr18 22247913 22248449 + 0 NA Intergenic Intergenic -76739 ENSMUSG00000024306.13 ENSMUSG00000024306 ENSMUST00000234661 Ccdc178 protein_coding Interval_92163 chr2 54981598 54981975 + 0 NA intron (ENSMUSG00000060988.12, intron 8 of 11) protein_coding-intron (ENSMUSG00000060988.12, intron 7 of 10) -22199 ENSMUSG00000089352.1 ENSMUSG00000089352 ENSMUST00000158727 Gm25489 snRNA Interval_168203 chr9 77949693 77949963 + 0 NA intron (ENSMUSG00000032349.13, intron 1 of 2) protein_coding-intron (ENSMUSG00000032349.13, intron 1 of 7) 32394 ENSMUSG00000032349.13 ENSMUSG00000032349 ENSMUST00000134072 Elovl5 protein_coding Interval_181 JH792828.1 190323 194107 + 0 NA NA NA NA NA Interval_167016 chr9 64557213 64557563 + 0 NA intron (ENSMUSG00000036466.17, intron 1 of 1) protein_coding-intron (ENSMUSG00000036466.17, intron 5 of 24) 168332 ENSMUSG00000004771.12 ENSMUSG00000004771 ENSMUST00000165083 Rab11a protein_coding Interval_115846 chr4 105209749 105210285 + 0 NA intron (ENSMUSG00000028517.8, intron 4 of 5) protein_coding-intron (ENSMUSG00000028517.8, intron 4 of 5) 52670 ENSMUSG00000028517.8 ENSMUSG00000028517 ENSMUST00000064139 Plpp3 protein_coding Interval_165680 chr9 50886852 50887697 + 0 NA promoter-TSS (ENSMUSG00000088708.1) snRNA-promoter-TSS (ENSMUSG00000088708.1) -676 ENSMUSG00000088708.1 ENSMUSG00000088708 ENSMUST00000158083 Gm25558 snRNA Interval_30169 chr11 90084621 90084947 + 0 NA Intergenic Intergenic 54436 ENSMUSG00000069763.3 ENSMUSG00000069763 ENSMUST00000092788 Tmem100 protein_coding Interval_31708 chr11 102364894 102365122 + 0 NA intron (ENSMUSG00000006574.15, intron 1 of 4) protein_coding-intron (ENSMUSG00000006574.15, intron 1 of 19) 1195 ENSMUSG00000006574.15 ENSMUSG00000006574 ENSMUST00000151050 Slc4a1 protein_coding Interval_22148 chr11 6623758 6626764 + 0 NA intron (ENSMUSG00000000384.15, intron 1 of 3) protein_coding-intron (ENSMUSG00000000384.15, intron 1 of 11) 806 ENSMUSG00000000384.15 ENSMUSG00000000384 ENSMUST00000144463 Tbrg4 protein_coding Interval_66040 chr16 31141656 31142078 + 0 NA intron (ENSMUSG00000049076.12, intron 3 of 21) protein_coding-intron (ENSMUSG00000049076.12, intron 3 of 21) -16003 ENSMUSG00000116943.1 ENSMUSG00000116943 ENSMUST00000231868 Gm18237 processed_pseudogene Interval_135370 chr6 38676350 38678075 + 0 NA intron (ENSMUSG00000079598.4, intron 3 of 3) protein_coding-intron (ENSMUSG00000079598.4, intron 3 of 4) 13333 ENSMUSG00000079598.4 ENSMUSG00000079598 ENSMUST00000238216 Clec2l protein_coding Interval_3823 chr1 63272373 63274110 + 0 NA promoter-TSS (ENSMUSG00000027520.16) protein_coding-promoter-TSS (ENSMUSG00000027520.16) -24 ENSMUSG00000027520.16 ENSMUSG00000027520 ENSMUST00000029025 Zdbf2 protein_coding Interval_66285 chr16 32867828 32868997 + 0 NA promoter-TSS (ENSMUSG00000035629.19) protein_coding-promoter-TSS (ENSMUSG00000035629.19) -9395 ENSMUSG00000022800.14 ENSMUSG00000022800 ENSMUST00000127493 Fyttd1 protein_coding Interval_162054 chr8 124757702 124759088 + 0 NA Intergenic Intergenic -6563 ENSMUSG00000043068.6 ENSMUSG00000043068 ENSMUST00000055257 Fam89a protein_coding Interval_15100 chr10 42574471 42575387 + 0 NA intron (ENSMUSG00000019803.11, intron 2 of 3) protein_coding-intron (ENSMUSG00000019803.11, intron 2 of 8) 5845 ENSMUSG00000019803.11 ENSMUSG00000019803 ENSMUST00000143891 Nr2e1 protein_coding Interval_159970 chr8 105476993 105477286 + 0 NA intron (ENSMUSG00000039199.6, intron 6 of 13) protein_coding-intron (ENSMUSG00000039199.6, intron 3 of 10) -7729 ENSMUSG00000014846.12 ENSMUSG00000014846 ENSMUST00000176419 Tppp3 protein_coding Interval_22500 chr11 11153973 11154163 + 0 NA intron (ENSMUSG00000050830.17, intron 2 of 4) protein_coding-intron (ENSMUSG00000050830.17, intron 1 of 3) 13554 ENSMUSG00000088861.1 ENSMUSG00000088861 ENSMUST00000158236 Gm23065 rRNA Interval_47963 chr13 94685750 94686354 + 0 NA exon (ENSMUSG00000112934.1, exon 5 of 5) lincRNA-exon (ENSMUSG00000112934.1, exon 5 of 5) 14304 ENSMUSG00000112934.1 ENSMUSG00000112934 ENSMUST00000221742 Gm32305 lincRNA Interval_4159 chr1 71034964 71035896 + 0 NA intron (ENSMUSG00000026196.7, intron 9 of 10) protein_coding-intron (ENSMUSG00000026196.7, intron 9 of 10) 4600 ENSMUSG00000089965.1 ENSMUSG00000089965 ENSMUST00000159588 Gm16236 processed_pseudogene Interval_25354 chr11 46619994 46620602 + 0 NA intron (ENSMUSG00000064010.12, intron 2 of 5) protein_coding-intron (ENSMUSG00000064010.12, intron 3 of 6) 8963 ENSMUSG00000064010.12 ENSMUSG00000064010 ENSMUST00000109227 Dppa1 protein_coding Interval_92957 chr2 68966582 68967327 + 0 NA intron (ENSMUSG00000027035.10, intron 1 of 3) protein_coding-intron (ENSMUSG00000027035.10, intron 3 of 9) 4737 ENSMUSG00000103734.1 ENSMUSG00000103734 ENSMUST00000194679 Gm37651 TEC Interval_65163 chr16 20283721 20284129 + 0 NA promoter-TSS (ENSMUSG00000033918.16) protein_coding-promoter-TSS (ENSMUSG00000033918.16) 18454 ENSMUSG00000033918.16 ENSMUSG00000033918 ENSMUST00000153275 Parl protein_coding Interval_42678 chr13 17899913 17900149 + 0 NA intron (ENSMUSG00000008859.8, intron 1 of 4) protein_coding-intron (ENSMUSG00000008859.8, intron 1 of 4) 5176 ENSMUSG00000114177.1 ENSMUSG00000114177 ENSMUST00000221786 Gm18362 processed_pseudogene Interval_18496 chr10 86742638 86743436 + 0 NA intron (ENSMUSG00000044937.15, intron 1 of 7) protein_coding-intron (ENSMUSG00000044937.15, intron 8 of 15) 6151 ENSMUSG00000044937.15 ENSMUSG00000044937 ENSMUST00000219070 Ttc41 protein_coding Interval_121768 chr5 7719344 7719919 + 0 NA intron (ENSMUSG00000105068.1, intron 3 of 5) lincRNA-intron (ENSMUSG00000105068.1, intron 3 of 5) -137477 ENSMUSG00000081226.1 ENSMUSG00000081226 ENSMUST00000118633 Gm8802 processed_pseudogene Interval_130846 chr5 131280493 131281080 + 0 NA intron (ENSMUSG00000034040.16, intron 1 of 1) protein_coding-intron (ENSMUSG00000034040.16, intron 1 of 10) 27292 ENSMUSG00000034040.16 ENSMUSG00000034040 ENSMUST00000162966 Galnt17 protein_coding Interval_171637 chr9 119768355 119769154 + 0 NA intron (ENSMUSG00000034115.10, intron 22 of 26) protein_coding-intron (ENSMUSG00000034115.10, intron 22 of 26) 55106 ENSMUSG00000034115.10 ENSMUSG00000034115 ENSMUST00000070617 Scn11a protein_coding Interval_45316 chr13 54302409 54304080 + 0 NA intron (ENSMUSG00000112941.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000112941.1, intron 1 of 2) 686 ENSMUSG00000112941.1 ENSMUSG00000112941 ENSMUST00000223430 Gm48623 lincRNA Interval_128648 chr5 114494569 114495363 + 0 NA Intergenic Intergenic 42546 ENSMUSG00000041939.14 ENSMUSG00000041939 ENSMUST00000139420 Mvk protein_coding Interval_173494 chrX 95956599 95957491 + 0 NA promoter-TSS (ENSMUSG00000057421.12) protein_coding-promoter-TSS (ENSMUSG00000057421.12) -8842 ENSMUSG00000057421.12 ENSMUSG00000057421 ENSMUST00000139717 Las1l protein_coding Interval_141613 chr6 131325803 131326268 + 0 NA intron (ENSMUSG00000032899.14, intron 1 of 3) protein_coding-intron (ENSMUSG00000032899.14, intron 1 of 3) 27562 ENSMUSG00000032899.14 ENSMUSG00000032899 ENSMUST00000204371 Styk1 protein_coding Interval_25732 chr11 51201587 51203151 + 0 NA intron (ENSMUSG00000086646.7, intron 1 of 3) lincRNA-intron (ENSMUSG00000086646.7, intron 1 of 3) 18049 ENSMUSG00000086646.7 ENSMUSG00000086646 ENSMUST00000137964 Platr20 lincRNA Interval_60269 chr15 71763577 71764306 + 0 NA Intergenic Intergenic -30245 ENSMUSG00000104552.1 ENSMUSG00000104552 ENSMUST00000197446 Gm47309 miRNA Interval_36257 chr12 40377199 40377873 + 0 NA intron (ENSMUSG00000055917.15, intron 3 of 12) protein_coding-intron (ENSMUSG00000055917.15, intron 2 of 11) -48558 ENSMUSG00000055917.15 ENSMUSG00000055917 ENSMUST00000221847 Zfp277 protein_coding Interval_126292 chr5 86180431 86180878 + 0 NA TTS (ENSMUSG00000029255.8) protein_coding-TTS (ENSMUSG00000029255.8) -7915 ENSMUSG00000035898.13 ENSMUSG00000035898 ENSMUST00000147734 Uba6 protein_coding Interval_9267 chr1 155676783 155677581 + 0 NA intron (ENSMUSG00000033701.13, intron 6 of 7) protein_coding-intron (ENSMUSG00000033701.13, intron 6 of 7) 74502 ENSMUSG00000026468.14 ENSMUSG00000026468 ENSMUST00000195275 Lhx4 protein_coding Interval_37502 chr12 69390215 69390520 + 0 NA Intergenic Intergenic -17899 ENSMUSG00000052673.2 ENSMUSG00000052673 ENSMUST00000053451 Gm9887 antisense Interval_123157 chr5 30184870 30185150 + 0 NA TTS (ENSMUSG00000059447.13) protein_coding-TTS (ENSMUSG00000059447.13) 14271 ENSMUSG00000088113.1 ENSMUSG00000088113 ENSMUST00000157488 Mir1960 miRNA Interval_65534 chr16 23113347 23115920 + 0 NA TTS (ENSMUSG00000022884.16) protein_coding-TTS (ENSMUSG00000022884.16) 111 ENSMUSG00000022881.15 ENSMUSG00000022881 ENSMUST00000115337 Rfc4 protein_coding Interval_58569 chr15 36210366 36211180 + 0 NA promoter-TSS (ENSMUSG00000115811.1) antisense-promoter-TSS (ENSMUSG00000115811.1) -68 ENSMUSG00000115811.1 ENSMUSG00000115811 ENSMUST00000227302 Gm41293 antisense Interval_122588 chr5 24046002 24046533 + 0 NA Intergenic Intergenic -35855 ENSMUSG00000105866.1 ENSMUSG00000105866 ENSMUST00000199216 Gm6745 processed_pseudogene Interval_68215 chr16 68628120 68629018 + 0 NA Intergenic Intergenic 117634 ENSMUSG00000116859.1 ENSMUSG00000116859 ENSMUST00000231403 Gm49651 processed_pseudogene Interval_148794 chr7 87701887 87702083 + 0 NA intron (ENSMUSG00000049583.15, intron 3 of 3) protein_coding-intron (ENSMUSG00000049583.15, intron 1 of 7) -70582 ENSMUSG00000108983.1 ENSMUSG00000108983 ENSMUST00000207898 Gm44926 TEC Interval_86313 chr19 38638910 38639188 + 0 NA intron (ENSMUSG00000024998.17, intron 2 of 2) protein_coding-intron (ENSMUSG00000024998.17, intron 2 of 31) 65275 ENSMUSG00000117935.1 ENSMUSG00000117935 ENSMUST00000237606 Gm8717 processed_pseudogene Interval_39972 chr12 100167798 100168974 + 0 NA Intergenic Intergenic -18625 ENSMUSG00000113335.1 ENSMUSG00000113335 ENSMUST00000220866 Gm48296 TEC Interval_16131 chr10 60900731 60901312 + 0 NA Intergenic Intergenic -22002 ENSMUSG00000099279.1 ENSMUSG00000099279 ENSMUST00000183643 Mir6408 miRNA Interval_146568 chr7 46884695 46885093 + 0 NA Intergenic Intergenic 23608 ENSMUSG00000030851.15 ENSMUSG00000030851 ENSMUST00000126004 Ldhc protein_coding Interval_29680 chr11 85996594 85996827 + 0 NA Intergenic Intergenic 46215 ENSMUSG00000081632.1 ENSMUSG00000081632 ENSMUST00000118790 Gm11443 processed_pseudogene Interval_99237 chr2 158316128 158317581 + 0 NA intron (ENSMUSG00000016024.9, intron 5 of 7) protein_coding-intron (ENSMUSG00000016024.9, intron 5 of 14) 10361 ENSMUSG00000016024.9 ENSMUSG00000016024 ENSMUST00000129811 Lbp protein_coding Interval_58547 chr15 35991022 35992169 + 0 NA Intergenic Intergenic -37303 ENSMUSG00000088786.1 ENSMUSG00000088786 ENSMUST00000158161 Gm25372 misc_RNA Interval_12239 chr1 191062485 191063483 + 0 NA promoter-TSS (ENSMUSG00000026632.17) protein_coding-promoter-TSS (ENSMUSG00000026632.17) -40 ENSMUSG00000062510.12 ENSMUSG00000062510 ENSMUST00000078259 Nsl1 protein_coding Interval_72214 chr17 28613835 28615074 + 0 NA intron (ENSMUSG00000004865.16, intron 2 of 14) protein_coding-intron (ENSMUSG00000004865.16, intron 2 of 15) 8029 ENSMUSG00000004865.16 ENSMUSG00000004865 ENSMUST00000114767 Srpk1 protein_coding Interval_75139 chr17 63863311 63864823 + 0 NA promoter-TSS (ENSMUSG00000045506.3) protein_coding-promoter-TSS (ENSMUSG00000045506.3) -276 ENSMUSG00000045506.3 ENSMUSG00000045506 ENSMUST00000050753 A930002H24Rik protein_coding Interval_7519 chr1 131956646 131957045 + 0 NA Intergenic Intergenic -6109 ENSMUSG00000100037.1 ENSMUSG00000100037 ENSMUST00000191034 Gm29103 processed_transcript Interval_164040 chr9 31089775 31090726 + 0 NA intron (ENSMUSG00000031995.9, intron 18 of 18) protein_coding-intron (ENSMUSG00000031995.9, intron 18 of 18) -3952 ENSMUSG00000081343.1 ENSMUSG00000081343 ENSMUST00000119589 Gm16071 processed_pseudogene Interval_72205 chr17 28580368 28581404 + 0 NA intron (ENSMUSG00000062252.9, intron 2 of 3) protein_coding-intron (ENSMUSG00000062252.9, intron 2 of 3) 5126 ENSMUSG00000062252.9 ENSMUSG00000062252 ENSMUST00000232974 Lhfpl5 protein_coding Interval_168114 chr9 77083501 77083888 + 0 NA Intergenic Intergenic -13497 ENSMUSG00000099138.1 ENSMUSG00000099138 ENSMUST00000183550 Gm5746 processed_pseudogene Interval_109549 chr3 144380875 144381734 + 0 NA Intergenic Intergenic 46368 ENSMUSG00000106416.1 ENSMUSG00000106416 ENSMUST00000198953 Gm5857 processed_pseudogene Interval_51828 chr14 32532707 32533301 + 0 NA intron (ENSMUSG00000054051.7, intron 5 of 5) protein_coding-intron (ENSMUSG00000054051.7, intron 5 of 20) -19571 ENSMUSG00000054051.7 ENSMUSG00000054051 ENSMUST00000228549 Ercc6 protein_coding Interval_24968 chr11 42213721 42213887 + 0 NA Intergenic Intergenic -31700 ENSMUSG00000010803.13 ENSMUSG00000010803 ENSMUST00000206085 Gabra1 protein_coding Interval_138424 chr6 88074683 88075640 + 0 NA Intergenic Intergenic -9402 ENSMUSG00000030062.7 ENSMUSG00000030062 ENSMUST00000204164 Rpn1 protein_coding Interval_173239 chrX 75103355 75104457 + 0 NA intron (ENSMUSG00000031403.14, intron 4 of 5) protein_coding-intron (ENSMUSG00000031403.14, intron 9 of 14) 2497 ENSMUSG00000089014.1 ENSMUSG00000089014 ENSMUST00000158389 Gm25520 snoRNA Interval_4620 chr1 75480834 75481213 + 0 NA intron (ENSMUSG00000051703.14, intron 2 of 2) protein_coding-intron (ENSMUSG00000051703.14, intron 1 of 3) 1319 ENSMUSG00000051703.14 ENSMUSG00000051703 ENSMUST00000187411 Tmem198 protein_coding Interval_134108 chr6 20433459 20433762 + 0 NA Intergenic Intergenic 537380 ENSMUSG00000106763.1 ENSMUSG00000106763 ENSMUST00000201133 Gm19102 processed_pseudogene Interval_152718 chr7 136804665 136804878 + 0 NA Intergenic Intergenic -6138 ENSMUSG00000110126.1 ENSMUSG00000110126 ENSMUST00000211473 Gm9347 processed_pseudogene Interval_56941 chr14 123801747 123801962 + 0 NA intron (ENSMUSG00000032925.16, intron 2 of 10) protein_coding-intron (ENSMUSG00000032925.16, intron 2 of 10) -103266 ENSMUSG00000082793.2 ENSMUSG00000082793 ENSMUST00000119073 Gm9308 processed_pseudogene Interval_119580 chr4 138480956 138481260 + 0 NA Intergenic Intergenic 26794 ENSMUSG00000046447.3 ENSMUSG00000046447 ENSMUST00000050918 Camk2n1 protein_coding Interval_50132 chr14 8174585 8175117 + 0 NA Intergenic Intergenic -7755 ENSMUSG00000021748.9 ENSMUSG00000021748 ENSMUST00000224690 Pdhb protein_coding Interval_80570 chr18 44310967 44311946 + 0 NA Intergenic Intergenic -4251 ENSMUSG00000117919.1 ENSMUSG00000117919 ENSMUST00000236086 Gm41717 lincRNA Interval_69928 chr17 3253364 3254118 + 0 NA intron (ENSMUSG00000116858.1, intron 1 of 3) lincRNA-intron (ENSMUSG00000116858.1, intron 1 of 3) 22470 ENSMUSG00000116858.1 ENSMUSG00000116858 ENSMUST00000232042 Gm49797 lincRNA Interval_33063 chr11 114066131 114067504 + 0 NA promoter-TSS (ENSMUSG00000041592.16) protein_coding-promoter-TSS (ENSMUSG00000041592.16) -24589 ENSMUSG00000086760.1 ENSMUSG00000086760 ENSMUST00000129365 1700025D23Rik lincRNA Interval_53286 chr14 55783215 55784118 + 0 NA promoter-TSS (ENSMUSG00000022220.14) protein_coding-promoter-TSS (ENSMUSG00000022220.14) 2686 ENSMUSG00000022221.14 ENSMUSG00000022221 ENSMUST00000226203 Ripk3 protein_coding Interval_163131 chr9 15520403 15520786 + 0 NA promoter-TSS (ENSMUSG00000058173.12) protein_coding-promoter-TSS (ENSMUSG00000058173.12) 27162 ENSMUSG00000058173.12 ENSMUSG00000058173 ENSMUST00000178999 Smco4 protein_coding Interval_153221 chr7 142555165 142555441 + 0 NA exon (ENSMUSG00000087090.7, exon 2 of 2) processed_transcript-exon (ENSMUSG00000087090.7, exon 2 of 2) 3293 ENSMUSG00000087090.7 ENSMUSG00000087090 ENSMUST00000123668 Nctc1 processed_transcript Interval_143983 chr7 18759732 18760898 + 0 NA promoter-TSS (ENSMUSG00000109234.1) unprocessed_pseudogene-promoter-TSS (ENSMUSG00000109234.1) -543 ENSMUSG00000109234.1 ENSMUSG00000109234 ENSMUST00000208869 Gm44561 unprocessed_pseudogene Interval_64458 chr16 11541897 11542854 + 0 NA intron (ENSMUSG00000071669.14, intron 14 of 20) protein_coding-intron (ENSMUSG00000071669.14, intron 7 of 13) -46069 ENSMUSG00000082653.1 ENSMUSG00000082653 ENSMUST00000117770 Gm15897 processed_pseudogene Interval_58132 chr15 28286469 28286726 + 0 NA intron (ENSMUSG00000022262.8, intron 22 of 78) protein_coding-intron (ENSMUSG00000022262.8, intron 22 of 78) 82845 ENSMUSG00000022262.8 ENSMUSG00000022262 ENSMUST00000067048 Dnah5 protein_coding Interval_31621 chr11 101777089 101777515 + 0 NA intron (ENSMUSG00000017724.14, intron 4 of 12) protein_coding-intron (ENSMUSG00000017724.14, intron 4 of 12) 8008 ENSMUSG00000017724.14 ENSMUSG00000017724 ENSMUST00000154512 Etv4 protein_coding Interval_116934 chr4 118303588 118304702 + 0 NA Intergenic Intergenic -12871 ENSMUSG00000033295.14 ENSMUSG00000033295 ENSMUST00000222620 Ptprf protein_coding Interval_61335 chr15 80920330 80922516 + 0 NA intron (ENSMUSG00000047888.10, intron 13 of 16) protein_coding-intron (ENSMUSG00000047888.10, intron 21 of 24) -1641 ENSMUSG00000047888.10 ENSMUSG00000047888 ENSMUST00000228525 Tnrc6b protein_coding Interval_74698 chr17 56036252 56037106 + 0 NA promoter-TSS (ENSMUSG00000003200.10) protein_coding-promoter-TSS (ENSMUSG00000003200.10) -103 ENSMUSG00000003200.10 ENSMUSG00000003200 ENSMUST00000233034 Sh3gl1 protein_coding Interval_51127 chr14 23896385 23897022 + 0 NA intron (ENSMUSG00000063142.15, intron 1 of 16) protein_coding-intron (ENSMUSG00000063142.15, intron 1 of 29) -108288 ENSMUSG00000114953.1 ENSMUSG00000114953 ENSMUST00000223837 4930519K11Rik bidirectional_promoter_lncRNA Interval_94852 chr2 97246062 97246728 + 0 NA intron (ENSMUSG00000050587.14, intron 5 of 7) protein_coding-intron (ENSMUSG00000050587.14, intron 4 of 6) 8577 ENSMUSG00000088633.1 ENSMUSG00000088633 ENSMUST00000158008 Gm22313 snoRNA Interval_5035 chr1 84513220 84513895 + 0 NA intron (ENSMUSG00000036766.12, intron 5 of 12) protein_coding-intron (ENSMUSG00000036766.12, intron 5 of 12) 110284 ENSMUSG00000036766.12 ENSMUSG00000036766 ENSMUST00000191546 Dner protein_coding Interval_80574 chr18 44384886 44385120 + 0 NA intron (ENSMUSG00000024472.9, intron 1 of 1) protein_coding-intron (ENSMUSG00000024472.9, intron 1 of 10) 4501 ENSMUSG00000024472.9 ENSMUSG00000024472 ENSMUST00000025350 Dcp2 protein_coding Interval_115504 chr4 99561219 99562291 + 0 NA Intergenic Intergenic -7745 ENSMUSG00000087332.1 ENSMUSG00000087332 ENSMUST00000132108 Gm12690 lincRNA Interval_12569 chr10 3329640 3329861 + 0 NA Intergenic Intergenic 26701 ENSMUSG00000111114.1 ENSMUSG00000111114 ENSMUST00000215318 Gm18703 processed_pseudogene Interval_39764 chr12 97732619 97732860 + 0 NA Intergenic Intergenic 7505 ENSMUSG00000112524.1 ENSMUSG00000112524 ENSMUST00000217709 Gm35274 lincRNA Interval_140067 chr6 113761593 113762331 + 0 NA intron (ENSMUSG00000030302.16, intron 15 of 19) protein_coding-intron (ENSMUSG00000030302.16, intron 15 of 19) -21235 ENSMUSG00000030298.10 ENSMUSG00000030298 ENSMUST00000205135 Sec13 protein_coding Interval_173459 chrX 94129638 94130927 + 0 NA Intergenic Intergenic -6907 ENSMUSG00000079509.10 ENSMUSG00000079509 ENSMUST00000130312 Zfx protein_coding Interval_148326 chr7 80523497 80524219 + 0 NA intron (ENSMUSG00000030528.12, intron 1 of 21) protein_coding-intron (ENSMUSG00000030528.12, intron 1 of 21) 16071 ENSMUSG00000091989.1 ENSMUSG00000091989 ENSMUST00000166096 Ndufab1-ps processed_pseudogene Interval_64986 chr16 17702042 17702830 + 0 NA promoter-TSS (ENSMUSG00000116561.1) processed_pseudogene-promoter-TSS (ENSMUSG00000116561.1) -491 ENSMUSG00000116561.1 ENSMUSG00000116561 ENSMUST00000231388 Gm18335 processed_pseudogene Interval_64819 chr16 16146309 16147199 + 0 NA promoter-TSS (ENSMUSG00000041974.10) protein_coding-promoter-TSS (ENSMUSG00000041974.10) 50 ENSMUSG00000041974.10 ENSMUSG00000041974 ENSMUST00000229846 Spidr protein_coding Interval_97740 chr2 143679201 143680488 + 0 NA intron (ENSMUSG00000027419.9, intron 2 of 11) protein_coding-intron (ENSMUSG00000027419.9, intron 2 of 11) 116121 ENSMUSG00000087115.7 ENSMUSG00000087115 ENSMUST00000156362 Pcsk2os2 antisense Interval_6784 chr1 119458148 119458472 + 0 NA Intergenic Intergenic -36062 ENSMUSG00000037035.5 ENSMUSG00000037035 ENSMUST00000038765 Inhbb protein_coding Interval_97872 chr2 144624301 144624827 + 0 NA intron (ENSMUSG00000027430.12, intron 2 of 4) protein_coding-intron (ENSMUSG00000027430.12, intron 3 of 5) -6331 ENSMUSG00000092833.1 ENSMUSG00000092833 ENSMUST00000175092 Gm24823 miRNA Interval_59635 chr15 56885377 56886162 + 0 NA intron (ENSMUSG00000115172.1, intron 2 of 2) lincRNA-intron (ENSMUSG00000115172.1, intron 2 of 2) -102341 ENSMUSG00000115493.1 ENSMUSG00000115493 ENSMUST00000228866 Gm5673 processed_pseudogene Interval_35846 chr12 31207834 31208067 + 0 NA Intergenic Intergenic -8460 ENSMUSG00000111944.1 ENSMUSG00000111944 ENSMUST00000218516 Gm18024 processed_pseudogene Interval_13438 chr10 18224755 18225004 + 0 NA intron (ENSMUSG00000059554.12, intron 2 of 4) protein_coding-intron (ENSMUSG00000059554.12, intron 3 of 4) -8544 ENSMUSG00000059554.12 ENSMUSG00000059554 ENSMUST00000052648 Ccdc28a protein_coding Interval_11558 chr1 182678365 182680384 + 0 NA promoter-TSS (ENSMUSG00000104376.1) TEC-promoter-TSS (ENSMUSG00000104376.1) -565 ENSMUSG00000104376.1 ENSMUSG00000104376 ENSMUST00000192593 Gm37516 TEC Interval_103386 chr3 41099264 41100573 + 0 NA Intergenic Intergenic -29248 ENSMUSG00000049940.7 ENSMUSG00000049940 ENSMUST00000124636 Pgrmc2 protein_coding Interval_115212 chr4 94482609 94483492 + 0 NA Intergenic Intergenic -4833 ENSMUSG00000088677.1 ENSMUSG00000088677 ENSMUST00000158052 Gm22804 snoRNA Interval_157834 chr8 74807716 74809121 + 0 NA intron (ENSMUSG00000079011.9, intron 2 of 2) lincRNA-intron (ENSMUSG00000079011.9, intron 4 of 9) 25519 ENSMUSG00000079011.9 ENSMUSG00000079011 ENSMUST00000137218 Gm11033 lincRNA Interval_87835 chr19 56356266 56357262 + 0 NA intron (ENSMUSG00000049134.15, intron 13 of 20) protein_coding-intron (ENSMUSG00000049134.15, intron 20 of 40) -7498 ENSMUSG00000090990.1 ENSMUSG00000090990 ENSMUST00000163160 Gm17197 antisense Interval_50735 chr14 18709500 18709703 + 0 NA intron (ENSMUSG00000058317.12, intron 4 of 4) protein_coding-intron (ENSMUSG00000058317.12, intron 2 of 4) -104568 ENSMUSG00000077689.1 ENSMUSG00000077689 ENSMUST00000104501 Gm22499 snoRNA Interval_134922 chr6 33665409 33666037 + 0 NA intron (ENSMUSG00000029763.17, intron 10 of 12) protein_coding-intron (ENSMUSG00000029763.17, intron 10 of 17) 26431 ENSMUSG00000107103.1 ENSMUSG00000107103 ENSMUST00000202529 Gm43164 TEC Interval_66743 chr16 36944561 36945596 + 0 NA intron (ENSMUSG00000022831.14, intron 2 of 8) protein_coding-intron (ENSMUSG00000022831.14, intron 3 of 13) 7791 ENSMUSG00000022831.14 ENSMUSG00000022831 ENSMUST00000163755 Hcls1 protein_coding Interval_169321 chr9 96381378 96381647 + 0 NA Intergenic Intergenic -37931 ENSMUSG00000032412.8 ENSMUSG00000032412 ENSMUST00000187341 Atp1b3 protein_coding Interval_3229 chr1 55017712 55018842 + 0 NA intron (ENSMUSG00000025982.13, intron 2 of 6) protein_coding-intron (ENSMUSG00000025982.13, intron 2 of 24) 9117 ENSMUSG00000025982.13 ENSMUSG00000025982 ENSMUST00000188419 Sf3b1 protein_coding Interval_97736 chr2 143646545 143646948 + 0 NA intron (ENSMUSG00000027419.9, intron 2 of 11) protein_coding-intron (ENSMUSG00000027419.9, intron 2 of 11) 100475 ENSMUSG00000027419.9 ENSMUSG00000027419 ENSMUST00000124751 Pcsk2 protein_coding Interval_81087 chr18 53744180 53745629 + 0 NA promoter-TSS (ENSMUSG00000048799.8) protein_coding-promoter-TSS (ENSMUSG00000048799.8) -341 ENSMUSG00000048799.8 ENSMUSG00000048799 ENSMUST00000235928 Cep120 protein_coding Interval_123032 chr5 28839180 28839460 + 0 NA intron (ENSMUSG00000097726.7, intron 3 of 6) antisense-intron (ENSMUSG00000097726.7, intron 3 of 6) 262047 ENSMUSG00000104587.1 ENSMUSG00000104587 ENSMUST00000197020 Gm43161 TEC Interval_67002 chr16 39264763 39265213 + 0 NA Intergenic Intergenic -76082 ENSMUSG00000116965.1 ENSMUSG00000116965 ENSMUST00000231748 Gm36742 lincRNA Interval_43267 chr13 28370822 28371622 + 0 NA Intergenic Intergenic 48641 ENSMUSG00000113216.1 ENSMUSG00000113216 ENSMUST00000221933 Gm40841 lincRNA Interval_98784 chr2 154916043 154917079 + 0 NA intron (ENSMUSG00000027596.10, intron 1 of 4) protein_coding-intron (ENSMUSG00000027596.10, intron 1 of 4) -23779 ENSMUSG00000074656.12 ENSMUSG00000074656 ENSMUST00000135524 Eif2s2 protein_coding Interval_20416 chr10 117423709 117424447 + 0 NA Intergenic Intergenic -5540 ENSMUSG00000095826.1 ENSMUSG00000095826 ENSMUST00000178437 Gm9002 processed_pseudogene Interval_32475 chr11 107736609 107737044 + 0 NA exon (ENSMUSG00000020723.3, exon 3 of 4) protein_coding-exon (ENSMUSG00000020723.3, exon 3 of 4) 5253 ENSMUSG00000020723.3 ENSMUSG00000020723 ENSMUST00000134076 Cacng4 protein_coding Interval_88372 chr2 4528993 4529773 + 0 NA intron (ENSMUSG00000026657.17, intron 8 of 24) protein_coding-intron (ENSMUSG00000026657.17, intron 7 of 23) 57904 ENSMUSG00000086018.7 ENSMUSG00000086018 ENSMUST00000137801 Gm13179 antisense Interval_168765 chr9 86782861 86783998 + 0 NA exon (ENSMUSG00000033419.16, exon 23 of 29) protein_coding-exon (ENSMUSG00000033419.16, exon 23 of 29) 3426 ENSMUSG00000103891.1 ENSMUSG00000103891 ENSMUST00000192170 Gm37941 TEC Interval_112847 chr4 45489503 45490808 + 0 NA promoter-TSS (ENSMUSG00000044813.15) protein_coding-promoter-TSS (ENSMUSG00000044813.15) -7353 ENSMUSG00000044813.15 ENSMUSG00000044813 ENSMUST00000147448 Shb protein_coding Interval_42376 chr13 12460847 12462133 + 0 NA promoter-TSS (ENSMUSG00000057554.13) protein_coding-promoter-TSS (ENSMUSG00000057554.13) -4967 ENSMUSG00000057554.13 ENSMUSG00000057554 ENSMUST00000152478 Lgals8 protein_coding Interval_98668 chr2 154097697 154097955 + 0 NA Intergenic Intergenic -10412 ENSMUSG00000081013.1 ENSMUSG00000081013 ENSMUST00000119537 Gm14497 processed_pseudogene Interval_164304 chr9 35175341 35176463 + 0 NA promoter-TSS (ENSMUSG00000032040.15) protein_coding-promoter-TSS (ENSMUSG00000032040.15) 91 ENSMUSG00000032040.15 ENSMUSG00000032040 ENSMUST00000155139 Dcps protein_coding Interval_8322 chr1 137330263 137330440 + 0 NA Intergenic Intergenic -4509 ENSMUSG00000102738.1 ENSMUSG00000102738 ENSMUST00000191810 1700006P03Rik TEC Interval_152936 chr7 139908152 139908638 + 0 NA intron (ENSMUSG00000066129.15, intron 3 of 29) protein_coding-intron (ENSMUSG00000066129.15, intron 3 of 30) -20044 ENSMUSG00000109710.1 ENSMUSG00000109710 ENSMUST00000209974 Gm4974 processed_pseudogene Interval_153556 chr8 3408162 3408617 + 0 NA intron (ENSMUSG00000004568.13, intron 1 of 3) protein_coding-intron (ENSMUSG00000004568.13, intron 1 of 19) -49650 ENSMUSG00000108955.1 ENSMUSG00000108955 ENSMUST00000207266 Gm44775 TEC Interval_120402 chr4 148384309 148384512 + 0 NA Intergenic Intergenic -24950 ENSMUSG00000086326.1 ENSMUSG00000086326 ENSMUST00000138802 Gm13200 lincRNA Interval_35325 chr12 20651754 20652858 + 0 NA intron (ENSMUSG00000113157.2, intron 1 of 1) processed_transcript-intron (ENSMUSG00000113157.2, intron 1 of 1) -14035 ENSMUSG00000116635.1 ENSMUSG00000116635 ENSMUST00000232444 Gm49699 transcribed_unprocessed_pseudogene Interval_115797 chr4 104538765 104539062 + 0 NA intron (ENSMUSG00000028519.16, intron 1 of 5) protein_coding-intron (ENSMUSG00000028519.16, intron 1 of 5) -66383 ENSMUSG00000028519.16 ENSMUSG00000028519 ENSMUST00000149672 Dab1 protein_coding Interval_155116 chr8 26705459 26705679 + 0 NA Intergenic Intergenic -37263 ENSMUSG00000109680.1 ENSMUSG00000109680 ENSMUST00000211305 Gm32098 lincRNA Interval_134496 chr6 29133172 29133403 + 0 NA intron (ENSMUSG00000029701.15, intron 7 of 11) protein_coding-intron (ENSMUSG00000029701.15, intron 14 of 18) 17392 ENSMUSG00000095596.1 ENSMUSG00000095596 ENSMUST00000178237 Gm24303 miRNA Interval_55634 chr14 96996484 96997385 + 0 NA Intergenic Intergenic -4641 ENSMUSG00000115601.1 ENSMUSG00000115601 ENSMUST00000227308 Gm49007 lincRNA Interval_132884 chr5 148509043 148509920 + 0 NA intron (ENSMUSG00000001687.15, intron 2 of 2) protein_coding-intron (ENSMUSG00000001687.15, intron 2 of 4) 42175 ENSMUSG00000001687.15 ENSMUSG00000001687 ENSMUST00000201597 Ubl3 protein_coding Interval_79929 chr18 36004599 36005312 + 0 NA intron (ENSMUSG00000024347.16, intron 9 of 14) protein_coding-intron (ENSMUSG00000024347.16, intron 9 of 14) 39888 ENSMUSG00000024347.16 ENSMUSG00000024347 ENSMUST00000175720 Psd2 protein_coding Interval_54991 chr14 76708483 76709693 + 0 NA Intergenic Intergenic 31434 ENSMUSG00000101009.6 ENSMUSG00000101009 ENSMUST00000191384 1700108F19Rik processed_transcript Interval_27911 chr11 70800645 70800945 + 0 NA exon (ENSMUSG00000057135.12, exon 2 of 5) protein_coding-exon (ENSMUSG00000057135.12, exon 2 of 5) 11791 ENSMUSG00000057135.12 ENSMUSG00000057135 ENSMUST00000074572 Scimp protein_coding Interval_7346 chr1 130192634 130192833 + 0 NA intron (ENSMUSG00000042581.14, intron 7 of 9) protein_coding-intron (ENSMUSG00000042581.14, intron 25 of 27) -3247 ENSMUSG00000100623.1 ENSMUSG00000100623 ENSMUST00000190086 Gm29428 processed_pseudogene Interval_58988 chr15 41408896 41410114 + 0 NA Intergenic Intergenic -166347 ENSMUSG00000116178.1 ENSMUSG00000116178 ENSMUST00000229823 Gm49529 processed_pseudogene Interval_40013 chr12 100489785 100490065 + 0 NA intron (ENSMUSG00000033530.8, intron 3 of 9) protein_coding-intron (ENSMUSG00000033530.8, intron 3 of 19) -23627 ENSMUSG00000033530.8 ENSMUSG00000033530 ENSMUST00000220614 Ttc7b protein_coding Interval_146832 chr7 52768469 52769872 + 0 NA Intergenic Intergenic 13705 ENSMUSG00000074092.5 ENSMUSG00000074092 ENSMUST00000117187 Gm6181 processed_pseudogene Interval_36684 chr12 51994132 51994369 + 0 NA promoter-TSS (ENSMUSG00000112064.1) processed_pseudogene-promoter-TSS (ENSMUSG00000112064.1) -786 ENSMUSG00000112064.1 ENSMUSG00000112064 ENSMUST00000218223 Gm47399 processed_pseudogene Interval_49642 chr13 113735318 113736684 + 0 NA Intergenic Intergenic 26127 ENSMUSG00000114962.1 ENSMUSG00000114962 ENSMUST00000225360 Gm6343 processed_pseudogene Interval_995 chr1 13706352 13706572 + 0 NA Intergenic Intergenic 37691 ENSMUSG00000067813.3 ENSMUSG00000067813 ENSMUST00000088542 Xkr9 protein_coding Interval_124478 chr5 48622402 48623551 + 0 NA intron (ENSMUSG00000029088.16, intron 1 of 8) protein_coding-intron (ENSMUSG00000029088.16, intron 1 of 8) 4177 ENSMUSG00000105574.1 ENSMUSG00000105574 ENSMUST00000197775 Gm43648 TEC Interval_137810 chr6 82701425 82701916 + 0 NA intron (ENSMUSG00000030042.15, intron 1 of 3) protein_coding-intron (ENSMUSG00000030042.15, intron 1 of 3) 3695 ENSMUSG00000030042.15 ENSMUSG00000030042 ENSMUST00000140281 Pole4 protein_coding Interval_139633 chr6 103959714 103959954 + 0 NA Intergenic Intergenic 4805 ENSMUSG00000108172.1 ENSMUSG00000108172 ENSMUST00000203981 Gm21054 processed_pseudogene Interval_89750 chr2 25213237 25213997 + 0 NA promoter-TSS (ENSMUSG00000036770.11) protein_coding-promoter-TSS (ENSMUSG00000036770.11) 34 ENSMUSG00000036770.11 ENSMUSG00000036770 ENSMUST00000149509 Stpg3 protein_coding Interval_95475 chr2 109930510 109931220 + 0 NA intron (ENSMUSG00000050199.13, intron 1 of 16) protein_coding-intron (ENSMUSG00000050199.13, intron 1 of 17) -17546 ENSMUSG00000063751.6 ENSMUSG00000063751 ENSMUST00000146110 Platr8 processed_transcript Interval_133354 chr6 3620289 3621292 + 0 NA Intergenic Intergenic 32739 ENSMUSG00000001376.17 ENSMUSG00000001376 ENSMUST00000184411 Vps50 protein_coding Interval_78112 chr18 8377064 8377528 + 0 NA Intergenic Intergenic -37833 ENSMUSG00000117484.1 ENSMUSG00000117484 ENSMUST00000234117 Gm5500 processed_pseudogene Interval_56293 chr14 116656526 116656900 + 0 NA Intergenic Intergenic -93502 ENSMUSG00000104296.1 ENSMUSG00000104296 ENSMUST00000193536 Gm38045 TEC Interval_131809 chr5 140016119 140017533 + 0 NA intron (ENSMUSG00000029554.15, intron 6 of 6) protein_coding-intron (ENSMUSG00000029554.15, intron 17 of 17) 15350 ENSMUSG00000105453.1 ENSMUSG00000105453 ENSMUST00000198772 Gm43702 TEC Interval_8866 chr1 151654407 151655491 + 0 NA intron (ENSMUSG00000026483.13, intron 5 of 13) protein_coding-intron (ENSMUSG00000026483.13, intron 5 of 14) 83576 ENSMUSG00000026483.13 ENSMUSG00000026483 ENSMUST00000086267 Fam129a protein_coding Interval_144960 chr7 29117912 29118879 + 0 NA intron (ENSMUSG00000030592.18, intron 2 of 108) protein_coding-intron (ENSMUSG00000030592.18, intron 2 of 105) 6620 ENSMUSG00000030592.18 ENSMUSG00000030592 ENSMUST00000208922 Ryr1 protein_coding Interval_128830 chr5 115495442 115495945 + 0 NA Intergenic Intergenic -3238 ENSMUSG00000081282.2 ENSMUSG00000081282 ENSMUST00000121159 Gm13836 processed_pseudogene Interval_62348 chr15 90784458 90784920 + 0 NA Intergenic Intergenic -20033 ENSMUSG00000067870.5 ENSMUSG00000067870 ENSMUST00000181935 Rpl31-ps8 processed_pseudogene Interval_119061 chr4 135283251 135284111 + 0 NA Intergenic Intergenic 6994 ENSMUSG00000087270.2 ENSMUSG00000087270 ENSMUST00000120974 Gm12983 processed_pseudogene Interval_76203 chr17 77071460 77072113 + 0 NA Intergenic Intergenic 135146 ENSMUSG00000117388.1 ENSMUSG00000117388 ENSMUST00000235006 Gm6496 processed_pseudogene Interval_18960 chr10 93418795 93420153 + 0 NA Intergenic Intergenic -13633 ENSMUSG00000098679.1 ENSMUSG00000098679 ENSMUST00000183565 Mir7688 miRNA Interval_81919 chr18 65873105 65874237 + 0 NA exon (ENSMUSG00000024517.17, exon 1 of 3) protein_coding-exon (ENSMUSG00000024517.17, exon 1 of 3) 851 ENSMUSG00000024517.17 ENSMUSG00000024517 ENSMUST00000173530 Grp protein_coding Interval_22092 chr11 6304510 6304733 + 0 NA intron (ENSMUSG00000020456.17, intron 2 of 2) protein_coding-intron (ENSMUSG00000020456.17, intron 2 of 22) 12636 ENSMUSG00000020456.17 ENSMUSG00000020456 ENSMUST00000081894 Ogdh protein_coding Interval_73863 chr17 44789408 44789672 + 0 NA intron (ENSMUSG00000038954.14, intron 2 of 2) protein_coding-intron (ENSMUSG00000038954.14, intron 2 of 11) 12215 ENSMUSG00000038954.14 ENSMUSG00000038954 ENSMUST00000129416 Supt3 protein_coding Interval_30964 chr11 97462636 97463802 + 0 NA intron (ENSMUSG00000049807.16, intron 5 of 18) protein_coding-intron (ENSMUSG00000049807.16, intron 6 of 18) 26934 ENSMUSG00000049807.16 ENSMUSG00000049807 ENSMUST00000093940 Arhgap23 protein_coding Interval_151131 chr7 118739922 118741281 + 0 NA promoter-TSS (ENSMUSG00000030982.19) protein_coding-promoter-TSS (ENSMUSG00000030982.19) 580 ENSMUSG00000108979.1 ENSMUSG00000108979 ENSMUST00000209027 1700016B15Rik TEC Interval_2376 chr1 38769997 38770643 + 0 NA Intergenic Intergenic 3136 ENSMUSG00000103531.1 ENSMUSG00000103531 ENSMUST00000192930 2610300A13Rik TEC Interval_144210 chr7 19963787 19964054 + 0 NA Intergenic Intergenic 10137 ENSMUSG00000070778.5 ENSMUSG00000070778 ENSMUST00000094754 Rpl7a-ps8 processed_pseudogene Interval_117715 chr4 125733823 125734105 + 0 NA Intergenic Intergenic 188453 ENSMUSG00000085562.7 ENSMUSG00000085562 ENSMUST00000144539 2610028E06Rik lincRNA Interval_112058 chr4 33798866 33799490 + 0 NA Intergenic Intergenic -117687 ENSMUSG00000077397.1 ENSMUSG00000077397 ENSMUST00000104209 Gm24341 snoRNA Interval_71001 chr17 17083768 17084018 + 0 NA intron (ENSMUSG00000096696.1, intron 1 of 3) protein_coding-intron (ENSMUSG00000096696.1, intron 1 of 3) 19780 ENSMUSG00000096696.1 ENSMUSG00000096696 ENSMUST00000127027 Zfp960 protein_coding Interval_102125 chr3 18215697 18216003 + 0 NA intron (ENSMUSG00000039519.6, intron 1 of 5) protein_coding-intron (ENSMUSG00000039519.6, intron 1 of 5) 27488 ENSMUSG00000039519.6 ENSMUSG00000039519 ENSMUST00000035625 Cyp7b1 protein_coding Interval_70062 chr17 5089244 5090085 + 0 NA intron (ENSMUSG00000069729.14, intron 2 of 19) protein_coding-intron (ENSMUSG00000069729.14, intron 2 of 18) 22446 ENSMUSG00000081783.2 ENSMUSG00000081783 ENSMUST00000122283 Gm15599 processed_pseudogene Interval_158307 chr8 80991556 80992199 + 0 NA intron (ENSMUSG00000038250.9, intron 6 of 9) protein_coding-intron (ENSMUSG00000038250.9, intron 6 of 9) 23036 ENSMUSG00000038250.9 ENSMUSG00000038250 ENSMUST00000211538 Usp38 protein_coding Interval_110952 chr4 10805902 10806193 + 0 NA Intergenic Intergenic -7496 ENSMUSG00000083997.1 ENSMUSG00000083997 ENSMUST00000121818 Gm12920 processed_pseudogene Interval_123314 chr5 31325863 31328777 + 0 NA TTS (ENSMUSG00000059434.9) protein_coding-TTS (ENSMUSG00000059434.9) 29475 ENSMUSG00000106935.1 ENSMUSG00000106935 ENSMUST00000200995 Gm19457 processed_pseudogene Interval_29283 chr11 82646048 82646257 + 0 NA Intergenic Intergenic 12799 ENSMUSG00000069796.3 ENSMUSG00000069796 ENSMUST00000125600 Gm11426 lincRNA Interval_102580 chr3 27954247 27955027 + 0 NA intron (ENSMUSG00000027695.16, intron 2 of 4) protein_coding-intron (ENSMUSG00000027695.16, intron 2 of 26) -58269 ENSMUSG00000043164.3 ENSMUSG00000043164 ENSMUST00000058077 Tmem212 protein_coding Interval_159127 chr8 90869375 90870784 + 0 NA intron (ENSMUSG00000056608.14, intron 2 of 39) protein_coding-intron (ENSMUSG00000056608.14, intron 2 of 39) -6502 ENSMUSG00000109812.1 ENSMUSG00000109812 ENSMUST00000210665 Gm45640 TEC Interval_68343 chr16 73651429 73652920 + 0 NA Intergenic Intergenic -48122 ENSMUSG00000116642.1 ENSMUSG00000116642 ENSMUST00000231958 Gm18168 unprocessed_pseudogene Interval_8910 chr1 152044819 152045595 + 0 NA intron (ENSMUSG00000032666.16, intron 1 of 6) protein_coding-intron (ENSMUSG00000032666.16, intron 1 of 5) 44763 ENSMUSG00000032666.16 ENSMUSG00000032666 ENSMUST00000121533 1700025G04Rik protein_coding Interval_70030 chr17 4769886 4771512 + 0 NA Intergenic Intergenic 22260 ENSMUSG00000116649.1 ENSMUSG00000116649 ENSMUST00000232212 Gm49780 processed_pseudogene Interval_25330 chr11 46421018 46421290 + 0 NA Intergenic Intergenic -15807 ENSMUSG00000020397.15 ENSMUSG00000020397 ENSMUST00000133635 Med7 protein_coding Interval_112241 chr4 37902112 37902866 + 0 NA Intergenic Intergenic -12571 ENSMUSG00000083983.1 ENSMUSG00000083983 ENSMUST00000119331 Gm12375 processed_pseudogene Interval_25409 chr11 47751205 47751383 + 0 NA intron (ENSMUSG00000020354.15, intron 1 of 2) protein_coding-intron (ENSMUSG00000020354.15, intron 1 of 2) -113825 ENSMUSG00000020354.15 ENSMUSG00000020354 ENSMUST00000128558 Sgcd protein_coding Interval_76240 chr17 78370419 78370657 + 0 NA exon (ENSMUSG00000056121.16, exon 8 of 8) protein_coding-exon (ENSMUSG00000056121.16, exon 8 of 8) 31997 ENSMUSG00000056121.16 ENSMUSG00000056121 ENSMUST00000234900 Fez2 protein_coding Interval_19548 chr10 102981713 102982025 + 0 NA Intergenic Intergenic 47247 ENSMUSG00000036602.14 ENSMUSG00000036602 ENSMUST00000218508 Alx1 protein_coding Interval_161417 chr8 120341045 120341798 + 0 NA intron (ENSMUSG00000031822.20, intron 1 of 2) protein_coding-intron (ENSMUSG00000092329.1, intron 1 of 15) 102128 ENSMUSG00000080549.2 ENSMUSG00000080549 ENSMUST00000116899 Gm22715 miRNA Interval_150433 chr7 110570695 110571023 + 0 NA intron (ENSMUSG00000038371.15, intron 1 of 18) protein_coding-intron (ENSMUSG00000038371.15, intron 1 of 40) 44067 ENSMUSG00000060777.4 ENSMUSG00000060777 ENSMUST00000167650 Gm10087 processed_pseudogene Interval_126046 chr5 77086121 77086826 + 0 NA TTS (ENSMUSG00000059325.14) protein_coding-TTS (ENSMUSG00000059325.14) -8059 ENSMUSG00000087541.1 ENSMUSG00000087541 ENSMUST00000148568 Hopxos antisense Interval_123413 chr5 32353574 32353942 + 0 NA promoter-TSS (ENSMUSG00000029134.14) protein_coding-promoter-TSS (ENSMUSG00000029134.14) 1125 ENSMUSG00000107078.1 ENSMUSG00000107078 ENSMUST00000202688 Gm36840 antisense Interval_51394 chr14 27193758 27194029 + 0 NA intron (ENSMUSG00000021895.10, intron 3 of 13) protein_coding-intron (ENSMUSG00000021895.10, intron 3 of 13) -16504 ENSMUSG00000114349.1 ENSMUSG00000114349 ENSMUST00000225776 Gm7591 processed_pseudogene Interval_29782 chr11 86748973 86749922 + 0 NA intron (ENSMUSG00000047126.17, intron 1 of 31) protein_coding-intron (ENSMUSG00000047126.17, intron 1 of 31) -22964 ENSMUSG00000047126.17 ENSMUSG00000047126 ENSMUST00000133501 Cltc protein_coding Interval_109836 chr3 148819495 148820246 + 0 NA TTS (ENSMUSG00000028184.12) protein_coding-TTS (ENSMUSG00000028184.12) 166810 ENSMUSG00000105934.1 ENSMUSG00000105934 ENSMUST00000196420 Gm43575 processed_pseudogene Interval_103105 chr3 35391773 35393586 + 0 NA Intergenic Intergenic -21154 ENSMUSG00000106512.1 ENSMUSG00000106512 ENSMUST00000197222 Gm43078 TEC Interval_9995 chr1 164780534 164780957 + 0 NA Intergenic Intergenic -15899 ENSMUSG00000026574.5 ENSMUSG00000026574 ENSMUST00000027861 Dpt protein_coding Interval_71749 chr17 25853671 25853874 + 0 NA TTS (ENSMUSG00000073434.12) protein_coding-TTS (ENSMUSG00000073434.12) -7191 ENSMUSG00000073434.12 ENSMUSG00000073434 ENSMUST00000176678 Wdr90 protein_coding Interval_30868 chr11 96979810 96980423 + 0 NA intron (ENSMUSG00000018678.13, intron 2 of 7) protein_coding-intron (ENSMUSG00000018678.13, intron 2 of 7) -2405 ENSMUSG00000018678.13 ENSMUSG00000018678 ENSMUST00000062652 Sp2 protein_coding Interval_22664 chr11 12662948 12663322 + 0 NA Intergenic Intergenic -13798 ENSMUSG00000089034.1 ENSMUSG00000089034 ENSMUST00000158409 Gm22156 snoRNA Interval_116592 chr4 115938504 115938765 + 0 NA intron (ENSMUSG00000028707.15, intron 1 of 4) protein_coding-intron (ENSMUSG00000028707.15, intron 1 of 4) 1292 ENSMUSG00000028707.15 ENSMUSG00000028707 ENSMUST00000084338 Dmbx1 protein_coding Interval_70017 chr17 4581593 4582229 + 0 NA Intergenic Intergenic -53067 ENSMUSG00000116767.1 ENSMUSG00000116767 ENSMUST00000232624 4930517M08Rik lincRNA Interval_92075 chr2 53013902 53014117 + 0 NA intron (ENSMUSG00000036053.17, intron 1 of 26) protein_coding-intron (ENSMUSG00000036053.17, intron 1 of 26) 156149 ENSMUSG00000036053.17 ENSMUSG00000036053 ENSMUST00000050719 Fmnl2 protein_coding Interval_134623 chr6 30018571 30018937 + 0 NA Intergenic Intergenic 30366 ENSMUSG00000095989.1 ENSMUSG00000095989 ENSMUST00000178068 Gm23049 miRNA Interval_145868 chr7 40873099 40873867 + 0 NA intron (ENSMUSG00000100600.6, intron 2 of 2) antisense-intron (ENSMUSG00000100600.6, intron 4 of 4) -3060 ENSMUSG00000101643.1 ENSMUSG00000101643 ENSMUST00000190685 Gm28307 lincRNA Interval_164636 chr9 40216549 40217243 + 0 NA Intergenic Intergenic 24567 ENSMUSG00000025602.13 ENSMUSG00000025602 ENSMUST00000168832 Zfp202 protein_coding Interval_74753 chr17 56325318 56326422 + 0 NA promoter-TSS (ENSMUSG00000024201.12) protein_coding-promoter-TSS (ENSMUSG00000024201.12) 21463 ENSMUSG00000001228.14 ENSMUSG00000001228 ENSMUST00000139654 Uhrf1 protein_coding Interval_39082 chr12 84919222 84919501 + 0 NA TTS (ENSMUSG00000092006.1) antisense-TTS (ENSMUSG00000092006.1) 1213 ENSMUSG00000092006.1 ENSMUSG00000092006 ENSMUST00000163802 Gm17139 antisense Interval_141496 chr6 128629930 128630744 + 0 NA Intergenic Intergenic -7424 ENSMUSG00000030361.16 ENSMUSG00000030361 ENSMUST00000203150 Klrb1a protein_coding Interval_96046 chr2 119413990 119414281 + 0 NA intron (ENSMUSG00000034154.15, intron 25 of 27) protein_coding-intron (ENSMUSG00000034154.15, intron 25 of 35) 25545 ENSMUSG00000034154.15 ENSMUSG00000034154 ENSMUST00000138707 Ino80 protein_coding Interval_19682 chr10 107883668 107883951 + 0 NA intron (ENSMUSG00000091455.4, intron 10 of 57) protein_coding-intron (ENSMUSG00000091455.4, intron 10 of 57) 28325 ENSMUSG00000091455.4 ENSMUSG00000091455 ENSMUST00000165341 Otogl protein_coding Interval_134763 chr6 31300708 31301068 + 0 NA intron (ENSMUSG00000087380.7, intron 2 of 3) processed_transcript-intron (ENSMUSG00000087380.7, intron 3 of 6) 8354 ENSMUSG00000087380.7 ENSMUSG00000087380 ENSMUST00000124811 2210408F21Rik processed_transcript Interval_153760 chr8 7285533 7287310 + 0 NA Intergenic Intergenic 55187 ENSMUSG00000108914.1 ENSMUSG00000108914 ENSMUST00000208610 Gm44908 processed_pseudogene Interval_137163 chr6 68772105 68772348 + 0 NA Intergenic Intergenic -3123 ENSMUSG00000076532.3 ENSMUSG00000076532 ENSMUST00000103333 Igkv4-91 IG_V_gene Interval_612 chr1 8924938 8926251 + 0 NA intron (ENSMUSG00000025909.16, intron 3 of 20) protein_coding-intron (ENSMUSG00000025909.16, intron 3 of 19) 26828 ENSMUSG00000025909.16 ENSMUSG00000025909 ENSMUST00000126083 Sntg1 protein_coding Interval_69661 chr16 95004437 95005042 + 0 NA Intergenic Intergenic -97665 ENSMUSG00000116667.1 ENSMUSG00000116667 ENSMUST00000232306 Gm49641 processed_pseudogene Interval_77248 chr17 87569406 87571904 + 0 NA intron (ENSMUSG00000117414.1, intron 1 of 3) lincRNA-intron (ENSMUSG00000117414.1, intron 1 of 3) 999 ENSMUSG00000117414.1 ENSMUSG00000117414 ENSMUST00000234992 Gm46587 lincRNA Interval_46589 chr13 67415453 67417064 + 0 NA intron (ENSMUSG00000055560.8, intron 1 of 2) protein_coding-intron (ENSMUSG00000055560.8, intron 1 of 3) 5150 ENSMUSG00000055560.8 ENSMUSG00000055560 ENSMUST00000224496 Zfp459 protein_coding Interval_62907 chr15 97817493 97817783 + 0 NA intron (ENSMUSG00000022475.19, intron 1 of 21) protein_coding-intron (ENSMUSG00000022475.19, intron 1 of 24) 13856 ENSMUSG00000022475.19 ENSMUSG00000022475 ENSMUST00000134258 Hdac7 protein_coding Interval_100246 chr2 167924713 167926018 + 0 NA Intergenic Intergenic -7007 ENSMUSG00000027540.13 ENSMUSG00000027540 ENSMUST00000142717 Ptpn1 protein_coding Interval_59045 chr15 42136377 42137191 + 0 NA Intergenic Intergenic 25091 ENSMUSG00000116008.1 ENSMUSG00000116008 ENSMUST00000230267 Gm49440 processed_pseudogene Interval_9580 chr1 159649905 159650689 + 0 NA intron (ENSMUSG00000073528.7, intron 1 of 1) processed_transcript-intron (ENSMUSG00000073528.7, intron 1 of 1) -31365 ENSMUSG00000073528.7 ENSMUSG00000073528 ENSMUST00000194909 Gm10530 processed_transcript Interval_58995 chr15 41499783 41500404 + 0 NA intron (ENSMUSG00000022307.16, intron 1 of 15) protein_coding-intron (ENSMUSG00000022307.16, intron 1 of 15) -256935 ENSMUSG00000116178.1 ENSMUSG00000116178 ENSMUST00000229823 Gm49529 processed_pseudogene Interval_164731 chr9 40858963 40860059 + 0 NA Intergenic Intergenic -14616 ENSMUSG00000054360.4 ENSMUSG00000054360 ENSMUST00000067375 Bsx protein_coding Interval_140514 chr6 119129586 119129857 + 0 NA intron (ENSMUSG00000051331.16, intron 1 of 3) protein_coding-intron (ENSMUSG00000051331.16, intron 1 of 46) -62635 ENSMUSG00000041477.14 ENSMUSG00000041477 ENSMUST00000127059 Dcp1b protein_coding Interval_96312 chr2 121544807 121545009 + 0 NA TTS (ENSMUSG00000027238.17) protein_coding-TTS (ENSMUSG00000027238.17) 6443 ENSMUSG00000027238.17 ENSMUSG00000027238 ENSMUST00000153704 Frmd5 protein_coding Interval_38492 chr12 79507118 79507311 + 0 NA intron (ENSMUSG00000059060.15, intron 1 of 2) protein_coding-intron (ENSMUSG00000059060.15, intron 7 of 7) 179861 ENSMUSG00000059060.15 ENSMUSG00000059060 ENSMUST00000221257 Rad51b protein_coding Interval_28916 chr11 79253241 79255212 + 0 NA intron (ENSMUSG00000017677.11, intron 1 of 4) protein_coding-intron (ENSMUSG00000017677.11, intron 1 of 8) -11277 ENSMUSG00000017677.11 ENSMUSG00000017677 ENSMUST00000137890 Wsb1 protein_coding Interval_113813 chr4 58995034 58996056 + 0 NA intron (ENSMUSG00000070972.13, intron 2 of 3) protein_coding-intron (ENSMUSG00000070972.13, intron 2 of 3) -7648 ENSMUSG00000070972.13 ENSMUSG00000070972 ENSMUST00000153467 Dnajc25 protein_coding Interval_91493 chr2 39399741 39400419 + 0 NA TTS (ENSMUSG00000083401.1) unprocessed_pseudogene-TTS (ENSMUSG00000083401.1) 4667 ENSMUSG00000083401.1 ENSMUSG00000083401 ENSMUST00000120391 Gm13506 unprocessed_pseudogene Interval_146912 chr7 55822350 55822601 + 0 NA intron (ENSMUSG00000033790.11, intron 18 of 20) protein_coding-intron (ENSMUSG00000033790.11, intron 18 of 22) 28310 ENSMUSG00000033790.11 ENSMUSG00000033790 ENSMUST00000206133 Tubgcp5 protein_coding Interval_148403 chr7 81051350 81051877 + 0 NA Intergenic Intergenic -7500 ENSMUSG00000085194.1 ENSMUSG00000085194 ENSMUST00000148597 Platr32 sense_intronic Interval_68268 chr16 71793149 71793371 + 0 NA Intergenic Intergenic 62527 ENSMUSG00000116664.1 ENSMUSG00000116664 ENSMUST00000232521 Gm18549 processed_pseudogene Interval_73355 chr17 36571977 36573028 + 0 NA Intergenic Intergenic 13881 ENSMUSG00000092332.1 ENSMUSG00000092332 ENSMUST00000173591 Gm8868 unprocessed_pseudogene Interval_116287 chr4 109331721 109332200 + 0 NA intron (ENSMUSG00000028552.13, intron 12 of 24) protein_coding-intron (ENSMUSG00000028552.13, intron 12 of 24) -38588 ENSMUSG00000028552.13 ENSMUSG00000028552 ENSMUST00000177140 Eps15 protein_coding Interval_141006 chr6 124302769 124303524 + 0 NA Intergenic Intergenic 1282 ENSMUSG00000095732.1 ENSMUSG00000095732 ENSMUST00000104136 Gm25311 snoRNA Interval_58829 chr15 38383930 38385223 + 0 NA Intergenic Intergenic 19578 ENSMUSG00000115405.1 ENSMUSG00000115405 ENSMUST00000227422 Gm41307 lincRNA Interval_172115 chrX 7713871 7715064 + 0 NA exon (ENSMUSG00000039382.12, exon 1 of 2) protein_coding-exon (ENSMUSG00000039382.12, exon 1 of 2) -7778 ENSMUSG00000109493.1 ENSMUSG00000109493 ENSMUST00000207461 Gm45208 protein_coding Interval_103182 chr3 36440330 36440966 + 0 NA Intergenic Intergenic 19072 ENSMUSG00000105792.1 ENSMUSG00000105792 ENSMUST00000200194 Gm17887 processed_pseudogene Interval_147745 chr7 73322103 73324066 + 0 NA intron (ENSMUSG00000097756.2, intron 1 of 1) antisense-intron (ENSMUSG00000097756.2, intron 1 of 1) 12554 ENSMUSG00000108530.1 ENSMUSG00000108530 ENSMUST00000205600 4930429H19Rik lincRNA Interval_43495 chr13 31887248 31887813 + 0 NA intron (ENSMUSG00000038372.14, intron 9 of 10) protein_coding-intron (ENSMUSG00000038372.14, intron 9 of 10) 3305 ENSMUSG00000083149.2 ENSMUSG00000083149 ENSMUST00000118067 Gm11380 processed_pseudogene Interval_100004 chr2 166414999 166415769 + 0 NA Intergenic Intergenic -17227 ENSMUSG00000087617.1 ENSMUSG00000087617 ENSMUST00000132465 Gm14268 lincRNA Interval_142933 chr6 147074863 147075229 + 0 NA TTS (ENSMUSG00000072662.2) protein_coding-TTS (ENSMUSG00000072662.2) 11955 ENSMUSG00000072662.2 ENSMUSG00000072662 ENSMUST00000123367 Mansc4 protein_coding Interval_32143 chr11 105550826 105551112 + 0 NA Intergenic Intergenic -46656 ENSMUSG00000080681.1 ENSMUSG00000080681 ENSMUST00000117031 Gm23990 miRNA Interval_73827 chr17 44219823 44220058 + 0 NA intron (ENSMUSG00000023959.10, intron 1 of 5) protein_coding-intron (ENSMUSG00000023959.10, intron 1 of 5) 85172 ENSMUSG00000023959.10 ENSMUSG00000023959 ENSMUST00000233193 Clic5 protein_coding Interval_126280 chr5 86005388 86006165 + 0 NA promoter-TSS (ENSMUSG00000106225.1) processed_pseudogene-promoter-TSS (ENSMUSG00000106225.1) -159 ENSMUSG00000106225.1 ENSMUSG00000106225 ENSMUST00000196185 Gm43564 processed_pseudogene Interval_102193 chr3 19315620 19316350 + 0 NA Intergenic Intergenic -4933 ENSMUSG00000069094.12 ENSMUSG00000069094 ENSMUST00000143120 Pde7a protein_coding Interval_106944 chr3 102103384 102104573 + 0 NA intron (ENSMUSG00000027861.13, intron 1 of 11) protein_coding-intron (ENSMUSG00000027861.13, intron 1 of 10) 17432 ENSMUSG00000027861.13 ENSMUSG00000027861 ENSMUST00000159833 Casq2 protein_coding Interval_147562 chr7 68286114 68286661 + 0 NA intron (ENSMUSG00000074071.11, intron 1 of 4) protein_coding-intron (ENSMUSG00000074071.11, intron 1 of 8) 10392 ENSMUSG00000074071.11 ENSMUSG00000074071 ENSMUST00000153458 Fam169b protein_coding Interval_5629 chr1 90412271 90414024 + 0 NA Intergenic Intergenic 41354 ENSMUSG00000101997.1 ENSMUSG00000101997 ENSMUST00000187630 Gm28722 lincRNA Interval_89586 chr2 23018226 23018866 + 0 NA TTS (ENSMUSG00000083650.1) processed_pseudogene-TTS (ENSMUSG00000083650.1) 1121 ENSMUSG00000083650.1 ENSMUSG00000083650 ENSMUST00000120528 Gm13357 processed_pseudogene Interval_53537 chr14 58610611 58610945 + 0 NA Intergenic Intergenic 39622 ENSMUSG00000077201.1 ENSMUSG00000077201 ENSMUST00000104013 Gm25614 snoRNA Interval_158495 chr8 84058952 84059703 + 0 NA Intergenic Intergenic 5810 ENSMUSG00000074215.2 ENSMUSG00000074215 ENSMUST00000098592 Gm10643 protein_coding Interval_64497 chr16 12758252 12759086 + 0 NA intron (ENSMUSG00000116520.1, intron 4 of 11) lincRNA-intron (ENSMUSG00000116520.1, intron 4 of 11) 2697 ENSMUSG00000091416.2 ENSMUSG00000091416 ENSMUST00000171185 Gm6327 processed_pseudogene Interval_163672 chr9 23721616 23721802 + 0 NA Intergenic Intergenic -54783 ENSMUSG00000111041.1 ENSMUSG00000111041 ENSMUST00000215669 Gm3011 processed_pseudogene Interval_53010 chr14 53439308 53440082 + 0 NA Intergenic Intergenic -3554 ENSMUSG00000096908.3 ENSMUSG00000096908 ENSMUST00000177622 Trav7-3 TR_V_gene Interval_47599 chr13 89761370 89761871 + 0 NA intron (ENSMUSG00000089940.1, intron 1 of 1) antisense-intron (ENSMUSG00000089940.1, intron 1 of 1) -21223 ENSMUSG00000021614.16 ENSMUSG00000021614 ENSMUST00000162715 Vcan protein_coding Interval_165254 chr9 45803832 45804151 + 0 NA promoter-TSS (ENSMUSG00000043987.18) protein_coding-promoter-TSS (ENSMUSG00000043987.18) -4931 ENSMUSG00000110997.1 ENSMUSG00000110997 ENSMUST00000215216 2610028D06Rik TEC Interval_118130 chr4 129120768 129121936 + 0 NA promoter-TSS (ENSMUSG00000028785.13) protein_coding-promoter-TSS (ENSMUSG00000028785.13) 388 ENSMUSG00000028785.13 ENSMUSG00000028785 ENSMUST00000135763 Hpca protein_coding Interval_50246 chr14 11235678 11236276 + 0 NA Intergenic Intergenic 8425 ENSMUSG00000072714.2 ENSMUSG00000072714 ENSMUST00000080237 Rpl21-ps4 processed_pseudogene Interval_10236 chr1 167379506 167380058 + 0 NA intron (ENSMUSG00000026688.5, intron 1 of 5) protein_coding-intron (ENSMUSG00000026688.5, intron 1 of 5) 14059 ENSMUSG00000026688.5 ENSMUSG00000026688 ENSMUST00000028005 Mgst3 protein_coding Interval_111756 chr4 27531538 27531918 + 0 NA Intergenic Intergenic -11450 ENSMUSG00000084163.1 ENSMUSG00000084163 ENSMUST00000120412 Gm11901 processed_pseudogene Interval_107979 chr3 118561772 118562723 + 0 NA promoter-TSS (ENSMUSG00000033308.16) protein_coding-promoter-TSS (ENSMUSG00000033308.16) 61 ENSMUSG00000033308.16 ENSMUSG00000033308 ENSMUST00000129148 Dpyd protein_coding Interval_149003 chr7 91431657 91432336 + 0 NA intron (ENSMUSG00000052572.19, intron 1 of 13) protein_coding-intron (ENSMUSG00000052572.19, intron 1 of 22) -39307 ENSMUSG00000088216.1 ENSMUSG00000088216 ENSMUST00000157591 Gm22080 snRNA Interval_174168 chrX 137040058 137040294 + 0 NA Intergenic Intergenic -9418 ENSMUSG00000042595.7 ENSMUSG00000042595 ENSMUST00000047852 Fam199x protein_coding Interval_10315 chr1 168629416 168630060 + 0 NA Intergenic Intergenic 46144 ENSMUSG00000103463.1 ENSMUSG00000103463 ENSMUST00000194611 1700063I16Rik TEC Interval_19953 chr10 111488465 111489218 + 0 NA intron (ENSMUSG00000058799.16, intron 4 of 13) protein_coding-intron (ENSMUSG00000058799.16, intron 4 of 15) 7348 ENSMUSG00000087819.1 ENSMUSG00000087819 ENSMUST00000157194 Gm25117 snoRNA Interval_85992 chr19 34801006 34801554 + 0 NA Intergenic Intergenic -2982 ENSMUSG00000117945.1 ENSMUSG00000117945 ENSMUST00000237604 Gm50116 processed_pseudogene Interval_135099 chr6 35351684 35352259 + 0 NA Intergenic Intergenic 21125 ENSMUSG00000107341.1 ENSMUSG00000107341 ENSMUST00000201560 1700065J11Rik lincRNA Interval_124664 chr5 52974983 52975992 + 0 NA intron (ENSMUSG00000106352.4, intron 2 of 2) processed_transcript-intron (ENSMUSG00000106352.4, intron 2 of 2) -6550 ENSMUSG00000106538.1 ENSMUSG00000106538 ENSMUST00000199474 Gm30301 lincRNA Interval_121468 chr4 156004112 156004668 + 0 NA intron (ENSMUSG00000029076.14, intron 5 of 7) protein_coding-intron (ENSMUSG00000029076.14, intron 4 of 6) -4120 ENSMUSG00000029076.14 ENSMUSG00000029076 ENSMUST00000149971 Sdf4 protein_coding Interval_147982 chr7 76227747 76228212 + 0 NA Intergenic Intergenic -1908 ENSMUSG00000025754.11 ENSMUSG00000025754 ENSMUST00000107442 Agbl1 protein_coding Interval_172883 chrX 52775253 52776583 + 0 NA Intergenic Intergenic -3169 ENSMUSG00000083621.1 ENSMUSG00000083621 ENSMUST00000119571 Gm14586 processed_pseudogene Interval_47918 chr13 94378530 94379420 + 0 NA intron (ENSMUSG00000021686.6, intron 1 of 26) protein_coding-intron (ENSMUSG00000021686.6, intron 1 of 26) -20052 ENSMUSG00000042857.3 ENSMUSG00000042857 ENSMUST00000221110 Gm9776 bidirectional_promoter_lncRNA Interval_133512 chr6 6069504 6070875 + 0 NA intron (ENSMUSG00000015112.15, intron 2 of 2) protein_coding-intron (ENSMUSG00000015112.15, intron 14 of 17) -92796 ENSMUSG00000085416.1 ENSMUSG00000085416 ENSMUST00000130004 1700019G24Rik antisense Interval_90705 chr2 32019399 32019890 + 0 NA intron (ENSMUSG00000001855.15, intron 23 of 35) protein_coding-intron (ENSMUSG00000001855.15, intron 23 of 35) -2300 ENSMUSG00000086192.1 ENSMUSG00000086192 ENSMUST00000141023 Gm13609 antisense Interval_92531 chr2 60375224 60377212 + 0 NA exon (ENSMUSG00000026980.15, exon 2 of 35) protein_coding-exon (ENSMUSG00000026980.15, exon 2 of 35) 7085 ENSMUSG00000026980.15 ENSMUSG00000026980 ENSMUST00000028362 Ly75 protein_coding Interval_24197 chr11 31181855 31182168 + 0 NA TTS (ENSMUSG00000091195.1) protein_coding-TTS (ENSMUSG00000091195.1) 451 ENSMUSG00000091195.1 ENSMUSG00000091195 ENSMUST00000165626 Gm17332 protein_coding Interval_132112 chr5 142813267 142814077 + 0 NA intron (ENSMUSG00000039477.16, intron 2 of 2) protein_coding-intron (ENSMUSG00000039477.16, intron 2 of 15) 39527 ENSMUSG00000082308.1 ENSMUSG00000082308 ENSMUST00000117498 Gm15770 processed_pseudogene Interval_155481 chr8 33850103 33850269 + 0 NA intron (ENSMUSG00000031586.17, intron 4 of 5) protein_coding-intron (ENSMUSG00000031586.17, intron 4 of 7) 35561 ENSMUSG00000098166.1 ENSMUSG00000098166 ENSMUST00000182843 Gm26978 sense_intronic Interval_114121 chr4 63651819 63653153 + 0 NA Intergenic Intergenic 10893 ENSMUSG00000099294.1 ENSMUSG00000099294 ENSMUST00000184810 Gm11214 protein_coding Interval_111162 chr4 13564735 13566412 + 0 NA Intergenic Intergenic -40461 ENSMUSG00000081063.1 ENSMUSG00000081063 ENSMUST00000120710 Gm11825 processed_pseudogene Interval_168260 chr9 78225945 78226361 + 0 NA Intergenic Intergenic -8850 ENSMUSG00000074183.3 ENSMUSG00000074183 ENSMUST00000127192 Gsta1 protein_coding Interval_161200 chr8 118514878 118515098 + 0 NA intron (ENSMUSG00000031841.19, intron 2 of 7) protein_coding-intron (ENSMUSG00000031841.19, intron 2 of 13) -88389 ENSMUSG00000064801.1 ENSMUSG00000064801 ENSMUST00000082867 Gm24035 snRNA Interval_94037 chr2 81714535 81715201 + 0 NA Intergenic Intergenic -171526 ENSMUSG00000088194.1 ENSMUSG00000088194 ENSMUST00000157569 Gm23900 rRNA Interval_161217 chr8 118751691 118752112 + 0 NA intron (ENSMUSG00000031841.19, intron 3 of 7) protein_coding-intron (ENSMUSG00000031841.19, intron 3 of 13) 25001 ENSMUSG00000087707.1 ENSMUSG00000087707 ENSMUST00000157082 Gm22999 snoRNA Interval_130884 chr5 133320935 133321251 + 0 NA Intergenic Intergenic -122249 ENSMUSG00000106097.1 ENSMUSG00000106097 ENSMUST00000198611 Gm42625 TEC Interval_151551 chr7 123465419 123466418 + 0 NA intron (ENSMUSG00000030762.11, intron 3 of 4) protein_coding-intron (ENSMUSG00000030762.11, intron 4 of 5) 2167 ENSMUSG00000030762.11 ENSMUSG00000030762 ENSMUST00000206106 Aqp8 protein_coding Interval_114473 chr4 80515276 80515539 + 0 NA Intergenic Intergenic 75009 ENSMUSG00000082555.1 ENSMUSG00000082555 ENSMUST00000117418 Gm11406 processed_pseudogene Interval_114219 chr4 68667982 68668675 + 0 NA Intergenic Intergenic 173079 ENSMUSG00000028351.5 ENSMUSG00000028351 ENSMUST00000140572 Brinp1 protein_coding Interval_57487 chr15 11713117 11713394 + 0 NA Intergenic Intergenic -9552 ENSMUSG00000115585.1 ENSMUSG00000115585 ENSMUST00000228108 Gm41271 processed_transcript Interval_72390 chr17 29540259 29540507 + 0 NA intron (ENSMUSG00000079580.9, intron 1 of 1) protein_coding-intron (ENSMUSG00000079580.9, intron 2 of 2) 9255 ENSMUSG00000091614.2 ENSMUSG00000091614 ENSMUST00000168877 Gm17657 protein_coding Interval_116555 chr4 115561128 115561573 + 0 NA Intergenic Intergenic -2299 ENSMUSG00000028712.12 ENSMUSG00000028712 ENSMUST00000030480 Cyp4a31 protein_coding Interval_99828 chr2 165166671 165167336 + 0 NA intron (ENSMUSG00000053166.14, intron 2 of 10) protein_coding-intron (ENSMUSG00000053166.14, intron 3 of 11) 7591 ENSMUSG00000086630.1 ENSMUSG00000086630 ENSMUST00000124728 Gm14397 antisense Interval_73198 chr17 35533869 35534917 + 0 NA exon (ENSMUSG00000024409.8, exon 2 of 2) protein_coding-exon (ENSMUSG00000024409.8, exon 2 of 2) 1192 ENSMUSG00000024409.8 ENSMUSG00000024409 ENSMUST00000025273 Psors1c2 protein_coding Interval_9906 chr1 164004140 164005105 + 0 NA Intergenic Intergenic 9733 ENSMUSG00000041396.13 ENSMUSG00000041396 ENSMUST00000111490 Mettl18 protein_coding Interval_163115 chr9 15368666 15369038 + 0 NA Intergenic Intergenic -12515 ENSMUSG00000111763.1 ENSMUSG00000111763 ENSMUST00000217087 Gm34973 lincRNA Interval_136087 chr6 50679006 50679439 + 0 NA Intergenic Intergenic -24783 ENSMUSG00000029831.7 ENSMUSG00000029831 ENSMUST00000031853 Npvf protein_coding Interval_68654 chr16 83615188 83615402 + 0 NA Intergenic Intergenic 49768 ENSMUSG00000116533.1 ENSMUSG00000116533 ENSMUST00000232058 Gm49561 processed_pseudogene Interval_28840 chr11 78668379 78669056 + 0 NA intron (ENSMUSG00000017376.15, intron 1 of 2) protein_coding-intron (ENSMUSG00000017376.15, intron 1 of 10) 41044 ENSMUSG00000085115.1 ENSMUSG00000085115 ENSMUST00000145158 Gm11197 processed_pseudogene Interval_87037 chr19 45736900 45737679 + 0 NA intron (ENSMUSG00000025219.13, intron 4 of 4) protein_coding-intron (ENSMUSG00000025219.13, intron 5 of 5) 5626 ENSMUSG00000025219.13 ENSMUSG00000025219 ENSMUST00000111925 Fgf8 protein_coding Interval_158763 chr8 86013139 86013637 + 0 NA intron (ENSMUSG00000036879.15, intron 17 of 31) protein_coding-intron (ENSMUSG00000036879.15, intron 17 of 31) 19143 ENSMUSG00000098439.1 ENSMUSG00000098439 ENSMUST00000183645 Hm629797 sense_intronic Interval_108314 chr3 123603569 123604412 + 0 NA intron (ENSMUSG00000027977.15, intron 2 of 6) protein_coding-intron (ENSMUSG00000027977.15, intron 4 of 12) -43861 ENSMUSG00000027977.15 ENSMUSG00000027977 ENSMUST00000132896 Ndst3 protein_coding Interval_153016 chr7 140888660 140889994 + 0 NA promoter-TSS (ENSMUSG00000025487.15) protein_coding-promoter-TSS (ENSMUSG00000025487.15) -1560 ENSMUSG00000083396.1 ENSMUSG00000083396 ENSMUST00000121585 Gm15542 processed_pseudogene Interval_90637 chr2 31604721 31605222 + 0 NA intron (ENSMUSG00000026843.15, intron 2 of 8) protein_coding-intron (ENSMUSG00000026843.15, intron 10 of 17) -7450 ENSMUSG00000098904.1 ENSMUSG00000098904 ENSMUST00000183343 Mir6998 miRNA Interval_170959 chr9 113295507 113295775 + 0 NA intron (ENSMUSG00000111022.1, intron 1 of 3) lincRNA-intron (ENSMUSG00000111022.1, intron 1 of 3) 7934 ENSMUSG00000111022.1 ENSMUSG00000111022 ENSMUST00000217623 Gm36367 lincRNA Interval_144216 chr7 20038121 20039188 + 0 NA intron (ENSMUSG00000060508.16, intron 4 of 7) protein_coding-intron (ENSMUSG00000060508.16, intron 5 of 9) -28452 ENSMUSG00000070150.1 ENSMUSG00000070150 ENSMUST00000093641 n-R5s152 rRNA Interval_51461 chr14 27715590 27715797 + 0 NA exon (ENSMUSG00000114653.1, exon 1 of 1) processed_pseudogene-exon (ENSMUSG00000114653.1, exon 1 of 1) 1316 ENSMUSG00000114653.1 ENSMUSG00000114653 ENSMUST00000224481 Gm18398 processed_pseudogene Interval_33397 chr11 116343505 116344182 + 0 NA intron (ENSMUSG00000052949.14, intron 3 of 4) protein_coding-intron (ENSMUSG00000052949.14, intron 18 of 18) 4075 ENSMUSG00000052949.14 ENSMUSG00000052949 ENSMUST00000149682 Rnf157 protein_coding Interval_135062 chr6 35073750 35076098 + 0 NA intron (ENSMUSG00000038784.13, intron 3 of 10) protein_coding-intron (ENSMUSG00000038784.13, intron 3 of 10) 58763 ENSMUSG00000038784.13 ENSMUSG00000038784 ENSMUST00000202666 Cnot4 protein_coding Interval_135254 chr6 37870338 37871717 + 0 NA exon (ENSMUSG00000029833.17, exon 1 of 19) protein_coding-exon (ENSMUSG00000029833.17, exon 1 of 19) 216 ENSMUSG00000029833.17 ENSMUSG00000029833 ENSMUST00000135387 Trim24 protein_coding Interval_32527 chr11 108165927 108166345 + 0 NA intron (ENSMUSG00000050965.14, intron 3 of 16) protein_coding-intron (ENSMUSG00000050965.14, intron 3 of 16) -15714 ENSMUSG00000084978.1 ENSMUSG00000084978 ENSMUST00000153899 Gm11655 antisense Interval_22759 chr11 14868235 14868410 + 0 NA Intergenic Intergenic 88295 ENSMUSG00000082156.1 ENSMUSG00000082156 ENSMUST00000117791 Gm12008 processed_pseudogene Interval_40360 chr12 104351603 104352383 + 0 NA intron (ENSMUSG00000079012.11, intron 1 of 4) protein_coding-intron (ENSMUSG00000079012.11, intron 1 of 4) -6010 ENSMUSG00000091157.1 ENSMUSG00000091157 ENSMUST00000163975 Serpina3l-ps unprocessed_pseudogene Interval_167922 chr9 74326164 74326355 + 0 NA Intergenic Intergenic -36351 ENSMUSG00000084725.2 ENSMUSG00000084725 ENSMUST00000122776 Gm24141 snRNA Interval_132881 chr5 148489203 148489911 + 0 NA Intergenic Intergenic 32719 ENSMUSG00000106956.1 ENSMUSG00000106956 ENSMUST00000202977 Gm19617 unprocessed_pseudogene Interval_66695 chr16 36243897 36244973 + 0 NA intron (ENSMUSG00000095620.7, intron 2 of 4) protein_coding-intron (ENSMUSG00000095620.7, intron 2 of 4) -8738 ENSMUSG00000075228.1 ENSMUSG00000075228 ENSMUST00000099936 Gm10813 pseudogene Interval_150129 chr7 107207851 107208300 + 0 NA Intergenic Intergenic -1370 ENSMUSG00000073894.1 ENSMUSG00000073894 ENSMUST00000098135 Rbmxl2 protein_coding Interval_170632 chr9 109760581 109760878 + 0 NA Intergenic Intergenic -14640 ENSMUSG00000059547.3 ENSMUSG00000059547 ENSMUST00000071917 Fbxw26 protein_coding Interval_58810 chr15 38226053 38226500 + 0 NA exon (ENSMUSG00000061923.4, exon 2 of 2) protein_coding-exon (ENSMUSG00000061923.4, exon 2 of 2) 7073 ENSMUSG00000061923.4 ENSMUSG00000061923 ENSMUST00000081966 Odf1 protein_coding Interval_99744 chr2 164621953 164622489 + 0 NA TTS (ENSMUSG00000077671.1) snoRNA-TTS (ENSMUSG00000077671.1) 299 ENSMUSG00000077671.1 ENSMUSG00000077671 ENSMUST00000104483 Gm24473 snoRNA Interval_144403 chr7 24950077 24950734 + 0 NA Intergenic Intergenic -4512 ENSMUSG00000108675.1 ENSMUSG00000108675 ENSMUST00000206318 Gm44970 lincRNA Interval_22913 chr11 17313515 17313740 + 0 NA Intergenic Intergenic -15208 ENSMUSG00000082797.3 ENSMUSG00000082797 ENSMUST00000117065 Gm12015 processed_pseudogene Interval_158458 chr8 83837169 83837937 + 0 NA Intergenic Intergenic -63182 ENSMUSG00000013033.16 ENSMUSG00000013033 ENSMUST00000131018 Adgrl1 protein_coding Interval_102768 chr3 30906312 30906558 + 0 NA TTS (ENSMUSG00000037652.15) protein_coding-TTS (ENSMUSG00000037652.15) 50442 ENSMUSG00000037661.14 ENSMUSG00000037661 ENSMUST00000147697 Gpr160 protein_coding Interval_109375 chr3 140870920 140871275 + 0 NA TTS (ENSMUSG00000104790.1) processed_pseudogene-TTS (ENSMUSG00000104790.1) 439 ENSMUSG00000104790.1 ENSMUSG00000104790 ENSMUST00000199712 Gm43276 processed_pseudogene Interval_11163 chr1 179777718 179778426 + 0 NA intron (ENSMUSG00000026491.13, intron 17 of 35) protein_coding-intron (ENSMUSG00000026491.13, intron 17 of 35) 24000 ENSMUSG00000026491.13 ENSMUSG00000026491 ENSMUST00000147137 Ahctf1 protein_coding Interval_14064 chr10 26397766 26397980 + 0 NA Intergenic Intergenic -13779 ENSMUSG00000112045.1 ENSMUSG00000112045 ENSMUST00000217918 Gm5649 processed_pseudogene Interval_71036 chr17 17343451 17344187 + 0 NA intron (ENSMUSG00000116590.1, intron 6 of 6) lincRNA-intron (ENSMUSG00000116590.1, intron 6 of 6) 2321 ENSMUSG00000043801.7 ENSMUSG00000043801 ENSMUST00000052440 Oaz1-ps processed_pseudogene Interval_133893 chr6 14485771 14487504 + 0 NA Intergenic Intergenic -29487 ENSMUSG00000077334.1 ENSMUSG00000077334 ENSMUST00000104146 Gm23013 snRNA Interval_140195 chr6 115267519 115268340 + 0 NA intron (ENSMUSG00000009394.13, intron 5 of 6) protein_coding-intron (ENSMUSG00000009394.13, intron 10 of 12) 14934 ENSMUSG00000009394.13 ENSMUSG00000009394 ENSMUST00000204726 Syn2 protein_coding Interval_172592 chrX 37167030 37167338 + 0 NA intron (ENSMUSG00000036551.6, intron 1 of 5) protein_coding-intron (ENSMUSG00000036551.6, intron 1 of 5) 1658 ENSMUSG00000036551.6 ENSMUSG00000036551 ENSMUST00000046557 Akap14 protein_coding Interval_129416 chr5 119866472 119867438 + 0 NA intron (ENSMUSG00000018263.11, intron 7 of 8) protein_coding-intron (ENSMUSG00000018263.11, intron 7 of 8) 34287 ENSMUSG00000018263.11 ENSMUSG00000018263 ENSMUST00000202504 Tbx5 protein_coding Interval_20587 chr10 119229540 119230515 + 0 NA intron (ENSMUSG00000020114.12, intron 1 of 14) protein_coding-intron (ENSMUSG00000020114.12, intron 1 of 14) -17418 ENSMUSG00000020114.12 ENSMUSG00000020114 ENSMUST00000126373 Cand1 protein_coding Interval_13304 chr10 14397469 14397699 + 0 NA Intergenic Intergenic 70173 ENSMUSG00000112225.1 ENSMUSG00000112225 ENSMUST00000218527 Gm48854 lincRNA Interval_30065 chr11 88972248 88975275 + 0 NA promoter-TSS (ENSMUSG00000033983.14) protein_coding-promoter-TSS (ENSMUSG00000033983.14) 1104 ENSMUSG00000081766.3 ENSMUSG00000081766 ENSMUST00000122062 2210409E12Rik transcribed_processed_pseudogene Interval_17292 chr10 75642769 75644382 + 0 NA intron (ENSMUSG00000006342.15, intron 1 of 12) protein_coding-intron (ENSMUSG00000006342.15, intron 1 of 12) 433 ENSMUSG00000006342.15 ENSMUSG00000006342 ENSMUST00000077610 Susd2 protein_coding Interval_55868 chr14 101666157 101666715 + 0 NA exon (ENSMUSG00000022111.9, exon 2 of 5) protein_coding-exon (ENSMUSG00000022111.9, exon 2 of 5) 12411 ENSMUSG00000022111.9 ENSMUSG00000022111 ENSMUST00000226340 Uchl3 protein_coding Interval_168130 chr9 77410625 77411128 + 0 NA Intergenic Intergenic -11458 ENSMUSG00000099170.1 ENSMUSG00000099170 ENSMUST00000183878 5730403I07Rik lincRNA Interval_171961 chr9 122962060 122962591 + 0 NA TTS (ENSMUSG00000036768.6) protein_coding-TTS (ENSMUSG00000036768.6) -11349 ENSMUSG00000032551.7 ENSMUSG00000032551 ENSMUST00000215129 1110059G10Rik protein_coding Interval_167917 chr9 74249439 74249649 + 0 NA intron (ENSMUSG00000044976.17, intron 18 of 19) protein_coding-intron (ENSMUSG00000044976.17, intron 18 of 19) -113066 ENSMUSG00000084725.2 ENSMUSG00000084725 ENSMUST00000122776 Gm24141 snRNA Interval_8052 chr1 135452039 135452686 + 0 NA TTS (ENSMUSG00000009418.16) protein_coding-TTS (ENSMUSG00000009418.16) 2321 ENSMUSG00000093515.1 ENSMUSG00000093515 ENSMUST00000175639 Mir1231 miRNA Interval_70530 chr17 11584581 11584858 + 0 NA intron (ENSMUSG00000023826.16, intron 5 of 10) protein_coding-intron (ENSMUSG00000023826.16, intron 3 of 3) -38921 ENSMUSG00000099618.1 ENSMUSG00000099618 ENSMUST00000185957 Gm28118 processed_pseudogene Interval_136361 chr6 53782770 53783441 + 0 NA Intergenic Intergenic 5721 ENSMUSG00000107984.1 ENSMUSG00000107984 ENSMUST00000203325 Gm5306 processed_pseudogene Interval_119831 chr4 140283487 140283682 + 0 NA Intergenic Intergenic -36800 ENSMUSG00000040972.8 ENSMUSG00000040972 ENSMUST00000039331 Igsf21 protein_coding Interval_1340 chr1 20796635 20796976 + 0 NA Intergenic Intergenic 8128 ENSMUSG00000041859.10 ENSMUSG00000041859 ENSMUST00000190421 Mcm3 protein_coding Interval_62703 chr15 96367358 96367972 + 0 NA intron (ENSMUSG00000033237.19, intron 12 of 20) protein_coding-intron (ENSMUSG00000033237.19, intron 12 of 20) -11149 ENSMUSG00000033237.19 ENSMUSG00000033237 ENSMUST00000176739 Arid2 protein_coding Interval_125416 chr5 66865090 66865739 + 0 NA intron (ENSMUSG00000037736.20, intron 2 of 31) protein_coding-intron (ENSMUSG00000037736.20, intron 2 of 25) -24952 ENSMUSG00000082420.2 ENSMUSG00000082420 ENSMUST00000121056 Gm6517 processed_pseudogene Interval_81270 chr18 57238940 57239580 + 0 NA intron (ENSMUSG00000024593.15, intron 5 of 23) protein_coding-intron (ENSMUSG00000024593.15, intron 5 of 24) 75880 ENSMUSG00000118230.1 ENSMUSG00000118230 ENSMUST00000235284 Gm50200 processed_pseudogene Interval_14135 chr10 27988346 27988541 + 0 NA Intergenic Intergenic 52079 ENSMUSG00000064208.6 ENSMUSG00000064208 ENSMUST00000077776 Gm10145 processed_pseudogene Interval_40252 chr12 102777966 102778322 + 0 NA TTS (ENSMUSG00000041712.7) protein_coding-TTS (ENSMUSG00000041712.7) -13432 ENSMUSG00000114106.1 ENSMUSG00000114106 ENSMUST00000221771 Gm47042 processed_pseudogene Interval_44706 chr13 47298081 47298342 + 0 NA Intergenic Intergenic 42728 ENSMUSG00000114958.1 ENSMUSG00000114958 ENSMUST00000224746 Gm48612 lincRNA Interval_63471 chr15 101266090 101268350 + 0 NA intron (ENSMUSG00000023034.7, intron 1 of 6) protein_coding-intron (ENSMUSG00000023034.7, intron 1 of 6) -5641 ENSMUSG00000023034.7 ENSMUSG00000023034 ENSMUST00000231153 Nr4a1 protein_coding Interval_165774 chr9 52622418 52624209 + 0 NA Intergenic Intergenic 56467 ENSMUSG00000078307.3 ENSMUSG00000078307 ENSMUST00000213843 AI593442 protein_coding Interval_76915 chr17 84968544 84969173 + 0 NA intron (ENSMUSG00000061130.13, intron 1 of 7) protein_coding-intron (ENSMUSG00000061130.13, intron 1 of 5) -11619 ENSMUSG00000097047.2 ENSMUSG00000097047 ENSMUST00000181147 1110020A21Rik bidirectional_promoter_lncRNA Interval_143378 chr7 6228356 6229348 + 0 NA intron (ENSMUSG00000058028.14, intron 2 of 5) protein_coding-intron (ENSMUSG00000058028.14, intron 2 of 5) -1327 ENSMUSG00000058028.14 ENSMUSG00000058028 ENSMUST00000165445 Zscan5b protein_coding Interval_137272 chr6 70934388 70934723 + 0 NA Intergenic Intergenic -15628 ENSMUSG00000051896.4 ENSMUSG00000051896 ENSMUST00000063456 Tex37 protein_coding Interval_150020 chr7 105022713 105023083 + 0 NA exon (ENSMUSG00000096773.4, exon 2 of 2) protein_coding-exon (ENSMUSG00000096773.4, exon 2 of 2) 5562 ENSMUSG00000096773.4 ENSMUSG00000096773 ENSMUST00000073102 Olfr675 protein_coding Interval_139268 chr6 97724247 97724732 + 0 NA Intergenic Intergenic -5950 ENSMUSG00000094510.1 ENSMUSG00000094510 ENSMUST00000180099 Gm24565 snRNA Interval_120556 chr4 149344251 149344536 + 0 NA intron (ENSMUSG00000028960.20, intron 24 of 29) protein_coding-intron (ENSMUSG00000028960.20, intron 21 of 26) -3492 ENSMUSG00000085819.7 ENSMUSG00000085819 ENSMUST00000141259 Ube4bos1 antisense Interval_57287 chr15 8435588 8436015 + 0 NA intron (ENSMUSG00000022141.7, intron 1 of 46) protein_coding-intron (ENSMUSG00000022141.7, intron 1 of 46) 8662 ENSMUSG00000022141.7 ENSMUSG00000022141 ENSMUST00000052965 Nipbl protein_coding Interval_124088 chr5 38203293 38203533 + 0 NA TTS (ENSMUSG00000029127.15) protein_coding-TTS (ENSMUSG00000029127.15) 384 ENSMUSG00000029127.15 ENSMUSG00000029127 ENSMUST00000137577 Zbtb49 protein_coding Interval_107251 chr3 104961259 104962665 + 0 NA promoter-TSS (ENSMUSG00000027840.5) protein_coding-promoter-TSS (ENSMUSG00000027840.5) -241 ENSMUSG00000027840.5 ENSMUSG00000027840 ENSMUST00000198108 Wnt2b protein_coding Interval_29624 chr11 85529235 85530009 + 0 NA intron (ENSMUSG00000059439.15, intron 6 of 14) protein_coding-intron (ENSMUSG00000059439.15, intron 15 of 24) 35863 ENSMUSG00000087779.1 ENSMUSG00000087779 ENSMUST00000157154 Gm23765 snRNA Interval_23111 chr11 19993147 19993393 + 0 NA intron (ENSMUSG00000045671.17, intron 1 of 5) protein_coding-intron (ENSMUSG00000045671.17, intron 1 of 5) 38700 ENSMUSG00000045671.17 ENSMUSG00000045671 ENSMUST00000123036 Spred2 protein_coding Interval_88906 chr2 12466765 12467598 + 0 NA Intergenic Intergenic -45155 ENSMUSG00000083547.2 ENSMUSG00000083547 ENSMUST00000117101 Gm13321 processed_pseudogene Interval_157386 chr8 70041833 70043545 + 0 NA promoter-TSS (ENSMUSG00000011306.7) protein_coding-promoter-TSS (ENSMUSG00000011306.7) 6 ENSMUSG00000031858.16 ENSMUSG00000031858 ENSMUST00000212596 Mau2 protein_coding Interval_18110 chr10 82690233 82691583 + 0 NA promoter-TSS (ENSMUSG00000020251.13) protein_coding-promoter-TSS (ENSMUSG00000020251.13) -8303 ENSMUSG00000020246.13 ENSMUSG00000020246 ENSMUST00000160681 Hcfc2 protein_coding Interval_123286 chr5 31122250 31122666 + 0 NA intron (ENSMUSG00000062077.14, intron 1 of 8) protein_coding-intron (ENSMUSG00000062077.14, intron 1 of 8) 5724 ENSMUSG00000062077.14 ENSMUSG00000062077 ENSMUST00000202769 Trim54 protein_coding Interval_126890 chr5 96769258 96769554 + 0 NA intron (ENSMUSG00000034687.8, intron 66 of 73) protein_coding-intron (ENSMUSG00000034687.8, intron 66 of 73) -24035 ENSMUSG00000029484.12 ENSMUSG00000029484 ENSMUST00000196126 Anxa3 protein_coding Interval_81129 chr18 54551960 54552203 + 0 NA Intergenic Intergenic -55497 ENSMUSG00000118103.1 ENSMUSG00000118103 ENSMUST00000237202 4933434P08Rik lincRNA Interval_75062 chr17 62770282 62770714 + 0 NA intron (ENSMUSG00000048915.12, intron 1 of 3) protein_coding-intron (ENSMUSG00000048915.12, intron 1 of 4) 110646 ENSMUSG00000048915.12 ENSMUSG00000048915 ENSMUST00000078839 Efna5 protein_coding Interval_63335 chr15 100410814 100411901 + 0 NA intron (ENSMUSG00000023030.16, intron 2 of 4) protein_coding-intron (ENSMUSG00000023030.16, intron 2 of 16) -11836 ENSMUSG00000087444.1 ENSMUSG00000087444 ENSMUST00000148928 Gm5475 protein_coding Interval_115599 chr4 101291997 101293720 + 0 NA intron (ENSMUSG00000085721.1, intron 2 of 2) lincRNA-intron (ENSMUSG00000085721.1, intron 2 of 2) 8637 ENSMUSG00000085863.1 ENSMUSG00000085863 ENSMUST00000153228 Gm12801 lincRNA Interval_35591 chr12 25108375 25109255 + 0 NA Intergenic Intergenic -12728 ENSMUSG00000020644.9 ENSMUSG00000020644 ENSMUST00000222667 Id2 protein_coding Interval_67967 chr16 62025894 62026073 + 0 NA Intergenic Intergenic -71478 ENSMUSG00000116619.1 ENSMUSG00000116619 ENSMUST00000232249 Gm49615 lincRNA Interval_34383 chr12 3756071 3756314 + 0 NA intron (ENSMUSG00000071454.13, intron 16 of 20) protein_coding-intron (ENSMUSG00000071454.13, intron 15 of 18) 5954 ENSMUSG00000092286.1 ENSMUSG00000092286 ENSMUST00000173847 Dtnbos antisense Interval_59051 chr15 42607952 42608136 + 0 NA intron (ENSMUSG00000022309.9, intron 1 of 8) protein_coding-intron (ENSMUSG00000022309.9, intron 1 of 8) -68281 ENSMUSG00000097805.2 ENSMUSG00000097805 ENSMUST00000228544 Gm17473 antisense Interval_167414 chr9 68880428 68881360 + 0 NA intron (ENSMUSG00000032238.17, intron 1 of 5) protein_coding-intron (ENSMUSG00000032238.17, intron 1 of 10) 227003 ENSMUSG00000032238.17 ENSMUSG00000032238 ENSMUST00000113624 Rora protein_coding Interval_11974 chr1 187975656 187975937 + 0 NA intron (ENSMUSG00000026610.13, intron 3 of 3) protein_coding-intron (ENSMUSG00000026610.13, intron 2 of 7) 33194 ENSMUSG00000103577.1 ENSMUSG00000103577 ENSMUST00000195397 9330162B11Rik antisense Interval_9242 chr1 155416617 155417609 + 0 NA intron (ENSMUSG00000026469.14, intron 1 of 6) protein_coding-intron (ENSMUSG00000026469.14, intron 1 of 14) 101147 ENSMUSG00000093286.1 ENSMUSG00000093286 ENSMUST00000175545 Gm22569 miRNA Interval_25113 chr11 44232769 44232977 + 0 NA Intergenic Intergenic 34336 ENSMUSG00000086738.1 ENSMUSG00000086738 ENSMUST00000145584 Gm12154 lincRNA Interval_159440 chr8 94702781 94704645 + 0 NA Intergenic Intergenic -5428 ENSMUSG00000088331.1 ENSMUSG00000088331 ENSMUST00000157706 Gm22846 misc_RNA Interval_7805 chr1 133825457 133826196 + 0 NA Intergenic Intergenic -3702 ENSMUSG00000103166.1 ENSMUSG00000103166 ENSMUST00000192625 Gm10537 TEC Interval_31861 chr11 103417936 103418408 + 0 NA Intergenic Intergenic -3564 ENSMUSG00000110636.1 ENSMUSG00000110636 ENSMUST00000212331 Gm39397 lincRNA Interval_8387 chr1 138608326 138609726 + 0 NA intron (ENSMUSG00000026393.10, intron 1 of 9) protein_coding-intron (ENSMUSG00000026393.10, intron 1 of 7) 10678 ENSMUSG00000026393.10 ENSMUSG00000026393 ENSMUST00000191549 Nek7 protein_coding Interval_97636 chr2 141412872 141413121 + 0 NA intron (ENSMUSG00000068205.14, intron 5 of 16) protein_coding-intron (ENSMUSG00000068205.14, intron 5 of 17) -126005 ENSMUSG00000086450.1 ENSMUSG00000086450 ENSMUST00000151538 Macrod2os1 antisense Interval_164872 chr9 42661268 42661919 + 0 NA intron (ENSMUSG00000032017.14, intron 6 of 20) protein_coding-intron (ENSMUSG00000032017.14, intron 4 of 18) -140762 ENSMUSG00000093745.1 ENSMUSG00000093745 ENSMUST00000176676 Gm24420 misc_RNA Interval_153642 chr8 4226359 4227501 + 0 NA exon (ENSMUSG00000046589.7, exon 1 of 3) protein_coding-exon (ENSMUSG00000046589.7, exon 1 of 3) -4277 ENSMUSG00000046589.7 ENSMUSG00000046589 ENSMUST00000207770 Lrrc8e protein_coding Interval_136209 chr6 52048035 52048330 + 0 NA Intergenic Intergenic 35581 ENSMUSG00000108244.1 ENSMUSG00000108244 ENSMUST00000203453 Gm44077 lincRNA Interval_14765 chr10 39674282 39675467 + 0 NA intron (ENSMUSG00000087177.7, intron 2 of 3) antisense-intron (ENSMUSG00000087177.7, intron 1 of 3) 12785 ENSMUSG00000111847.1 ENSMUSG00000111847 ENSMUST00000214635 Gm8899 processed_pseudogene Interval_72525 chr17 30454674 30455084 + 0 NA intron (ENSMUSG00000117835.1, intron 1 of 1) protein_coding-intron (ENSMUSG00000062202.14, intron 6 of 11) 4481 ENSMUSG00000117835.1 ENSMUSG00000117835 ENSMUST00000237696 Gm50250 processed_transcript Interval_106465 chr3 96537650 96537985 + 0 NA Intergenic Intergenic 12645 ENSMUSG00000038403.10 ENSMUSG00000038403 ENSMUST00000049208 Hjv protein_coding Interval_141523 chr6 128867233 128867714 + 0 NA intron (ENSMUSG00000090164.8, intron 2 of 2) protein_coding-intron (ENSMUSG00000090164.8, intron 2 of 2) -2279 ENSMUSG00000107633.1 ENSMUSG00000107633 ENSMUST00000204652 Gm44078 TEC Interval_91039 chr2 34620074 34621320 + 0 NA intron (ENSMUSG00000038696.14, intron 11 of 11) protein_coding-intron (ENSMUSG00000038696.14, intron 10 of 10) 29543 ENSMUSG00000087635.3 ENSMUSG00000087635 ENSMUST00000117516 Gm13414 processed_pseudogene Interval_174481 chrX 153220178 153220546 + 0 NA promoter-TSS (ENSMUSG00000082733.1) processed_pseudogene-promoter-TSS (ENSMUSG00000082733.1) -808 ENSMUSG00000082733.1 ENSMUSG00000082733 ENSMUST00000119867 Gm15153 processed_pseudogene Interval_38813 chr12 82557507 82557796 + 0 NA Intergenic Intergenic 14015 ENSMUSG00000091668.3 ENSMUSG00000091668 ENSMUST00000167222 Gm8358 processed_pseudogene Interval_40060 chr12 100935743 100937217 + 0 NA intron (ENSMUSG00000021182.16, intron 20 of 29) protein_coding-intron (ENSMUSG00000021182.16, intron 20 of 29) -5377 ENSMUSG00000097160.2 ENSMUSG00000097160 ENSMUST00000221309 A630072L19Rik antisense Interval_92213 chr2 56798717 56801636 + 0 NA Intergenic Intergenic 14365 ENSMUSG00000098437.1 ENSMUSG00000098437 ENSMUST00000184814 Mir195b miRNA Interval_13418 chr10 18055049 18056675 + 0 NA promoter-TSS (ENSMUSG00000019854.17) protein_coding-promoter-TSS (ENSMUSG00000019854.17) -32772 ENSMUSG00000078453.3 ENSMUSG00000078453 ENSMUST00000220433 Abracl protein_coding Interval_163649 chr9 23204146 23204922 + 0 NA Intergenic Intergenic -18752 ENSMUSG00000031963.8 ENSMUSG00000031963 ENSMUST00000214050 Bmper protein_coding Interval_77935 chr18 5818989 5820506 + 0 NA Intergenic Intergenic -125436 ENSMUSG00000117508.1 ENSMUSG00000117508 ENSMUST00000234953 Gm34804 lincRNA Interval_161558 chr8 121190042 121190277 + 0 NA intron (ENSMUSG00000092329.1, intron 1 of 15) protein_coding-intron (ENSMUSG00000092329.1, intron 1 of 15) 13443 ENSMUSG00000097097.2 ENSMUSG00000097097 ENSMUST00000212635 5033426O07Rik lincRNA Interval_36823 chr12 54399645 54400501 + 0 NA promoter-TSS (ENSMUSG00000112053.1) lincRNA-promoter-TSS (ENSMUSG00000112053.1) -103 ENSMUSG00000112053.1 ENSMUSG00000112053 ENSMUST00000217924 Gm46328 lincRNA Interval_161308 chr8 119653472 119654404 + 0 NA Intergenic Intergenic -12427 ENSMUSG00000023336.6 ENSMUSG00000023336 ENSMUST00000024107 Wfdc1 protein_coding Interval_148751 chr7 85175094 85175326 + 0 NA Intergenic Intergenic -16987 ENSMUSG00000092259.1 ENSMUSG00000092259 ENSMUST00000173880 Vmn2r-ps68 unprocessed_pseudogene Interval_120416 chr4 148461948 148462274 + 0 NA intron (ENSMUSG00000028991.15, intron 8 of 57) protein_coding-intron (ENSMUSG00000028991.15, intron 8 of 57) -17350 ENSMUSG00000047719.2 ENSMUSG00000047719 ENSMUST00000156686 Ubiad1 protein_coding Interval_78208 chr18 10141261 10141469 + 0 NA intron (ENSMUSG00000024290.9, intron 2 of 13) protein_coding-intron (ENSMUSG00000024290.9, intron 2 of 32) 4600 ENSMUSG00000058567.6 ENSMUSG00000058567 ENSMUST00000075609 Gm2531 pseudogene Interval_92977 chr2 69126170 69126567 + 0 NA Intergenic Intergenic -52937 ENSMUSG00000034738.8 ENSMUSG00000034738 ENSMUST00000141276 Nostrin protein_coding Interval_61356 chr15 81034022 81034529 + 0 NA intron (ENSMUSG00000042292.18, intron 2 of 2) protein_coding-intron (ENSMUSG00000042292.18, intron 2 of 12) -5368 ENSMUSG00000064587.1 ENSMUSG00000064587 ENSMUST00000082653 Gm25131 snRNA Interval_13817 chr10 22859364 22859608 + 0 NA Intergenic Intergenic -39327 ENSMUSG00000045680.8 ENSMUSG00000045680 ENSMUST00000218002 Tcf21 protein_coding Interval_113143 chr4 48597931 48598575 + 0 NA intron (ENSMUSG00000028347.14, intron 1 of 9) protein_coding-intron (ENSMUSG00000028347.14, intron 1 of 9) -38681 ENSMUSG00000028347.14 ENSMUSG00000028347 ENSMUST00000141720 Tmeff1 protein_coding Interval_36520 chr12 48211296 48211729 + 0 NA Intergenic Intergenic -163978 ENSMUSG00000111984.1 ENSMUSG00000111984 ENSMUST00000218240 Gm46327 unprocessed_pseudogene Interval_94036 chr2 81711034 81711444 + 0 NA Intergenic Intergenic -167897 ENSMUSG00000088194.1 ENSMUSG00000088194 ENSMUST00000157569 Gm23900 rRNA Interval_62445 chr15 93023931 93024815 + 0 NA Intergenic Intergenic 22041 ENSMUSG00000109770.1 ENSMUSG00000109770 ENSMUST00000209724 Gm30085 lincRNA Interval_154730 chr8 22895982 22896345 + 0 NA intron (ENSMUSG00000031540.14, intron 2 of 17) protein_coding-intron (ENSMUSG00000031540.14, intron 3 of 17) 22574 ENSMUSG00000109652.1 ENSMUSG00000109652 ENSMUST00000210028 Gm45555 TEC Interval_27410 chr11 67442932 67443717 + 0 NA Intergenic Intergenic 78539 ENSMUSG00000060180.12 ENSMUSG00000060180 ENSMUST00000181027 Myh13 protein_coding Interval_158038 chr8 78224400 78224598 + 0 NA intron (ENSMUSG00000037101.16, intron 2 of 10) protein_coding-intron (ENSMUSG00000037101.16, intron 5 of 13) 11149 ENSMUSG00000037101.16 ENSMUSG00000037101 ENSMUST00000124713 Ttc29 protein_coding Interval_121149 chr4 153525492 153525830 + 0 NA Intergenic Intergenic -43482 ENSMUSG00000039546.9 ENSMUSG00000039546 ENSMUST00000149177 Ajap1 protein_coding Interval_64896 chr16 17050464 17052877 + 0 NA Intergenic Intergenic 4150 ENSMUSG00000084792.1 ENSMUSG00000084792 ENSMUST00000141875 1700056N10Rik lincRNA Interval_150386 chr7 110063835 110064499 + 0 NA intron (ENSMUSG00000061079.14, intron 1 of 15) protein_coding-intron (ENSMUSG00000061079.14, intron 1 of 15) 2457 ENSMUSG00000061079.14 ENSMUSG00000061079 ENSMUST00000209252 Zfp143 protein_coding Interval_273 KZ289068.1 473112 475143 + 0 NA NA NA NA NA Interval_163321 chr9 20852492 20852736 + 0 NA intron (ENSMUSG00000118527.1, intron 14 of 19) unprocessed_pseudogene-intron (ENSMUSG00000118527.1, intron 14 of 19) 13086 ENSMUSG00000118527.1 ENSMUSG00000118527 ENSMUST00000238827 AC170598.1 unprocessed_pseudogene Interval_125580 chr5 72175541 72175856 + 0 NA Intergenic Intergenic -3410 ENSMUSG00000105016.1 ENSMUSG00000105016 ENSMUST00000200539 Gm42569 processed_pseudogene Interval_104343 chr3 63823040 63824530 + 0 NA intron (ENSMUSG00000036834.16, intron 2 of 22) protein_coding-intron (ENSMUSG00000036834.16, intron 1 of 21) -2009 ENSMUSG00000090131.1 ENSMUSG00000090131 ENSMUST00000162296 Gm16162 processed_pseudogene Interval_13903 chr10 24520461 24520812 + 0 NA Intergenic Intergenic -6125 ENSMUSG00000083196.1 ENSMUSG00000083196 ENSMUST00000120865 Gm15272 processed_pseudogene Interval_69747 chr16 96014448 96015331 + 0 NA intron (ENSMUSG00000022914.17, intron 7 of 8) protein_coding-intron (ENSMUSG00000022914.17, intron 36 of 41) -21201 ENSMUSG00000085884.1 ENSMUSG00000085884 ENSMUST00000146222 Gm15342 processed_transcript Interval_147508 chr7 67835680 67836278 + 0 NA exon (ENSMUSG00000109193.1, exon 2 of 3) lincRNA-exon (ENSMUSG00000109193.1, exon 2 of 3) 13653 ENSMUSG00000109193.1 ENSMUSG00000109193 ENSMUST00000208560 Gm39027 lincRNA Interval_58540 chr15 35926241 35926555 + 0 NA intron (ENSMUSG00000014313.15, intron 2 of 2) protein_coding-intron (ENSMUSG00000037646.10, intron 61 of 61) 10771 ENSMUSG00000014313.15 ENSMUSG00000014313 ENSMUST00000227231 Cox6c protein_coding Interval_4185 chr1 71455079 71455882 + 0 NA Intergenic Intergenic 38334 ENSMUSG00000101617.1 ENSMUSG00000101617 ENSMUST00000186254 Gm6947 processed_pseudogene Interval_6224 chr1 102859309 102859558 + 0 NA Intergenic Intergenic 94115 ENSMUSG00000087908.1 ENSMUSG00000087908 ENSMUST00000157283 Gm22034 snoRNA Interval_21103 chr10 126377805 126378003 + 0 NA Intergenic Intergenic 5929 ENSMUSG00000112482.1 ENSMUSG00000112482 ENSMUST00000218075 1700025K04Rik lincRNA Interval_119816 chr4 140174442 140174657 + 0 NA intron (ENSMUSG00000040972.8, intron 1 of 9) protein_coding-intron (ENSMUSG00000040972.8, intron 1 of 9) 31676 ENSMUSG00000086164.1 ENSMUSG00000086164 ENSMUST00000137283 Gm13029 antisense Interval_67401 chr16 48334168 48335812 + 0 NA Intergenic Intergenic 31082 ENSMUSG00000072419.5 ENSMUSG00000072419 ENSMUST00000097175 Dppa2 protein_coding Interval_140082 chr6 113929261 113929679 + 0 NA intron (ENSMUSG00000030302.16, intron 2 of 3) protein_coding-intron (ENSMUSG00000030302.16, intron 1 of 23) -8269 ENSMUSG00000087053.1 ENSMUSG00000087053 ENSMUST00000147045 Gm15082 antisense Interval_127333 chr5 103132554 103133864 + 0 NA intron (ENSMUSG00000046709.18, intron 2 of 13) protein_coding-intron (ENSMUSG00000046709.18, intron 2 of 13) 78125 ENSMUSG00000046709.18 ENSMUSG00000046709 ENSMUST00000136595 Mapk10 protein_coding Interval_26942 chr11 61733837 61734030 + 0 NA intron (ENSMUSG00000020528.14, intron 9 of 10) protein_coding-intron (ENSMUSG00000020528.14, intron 10 of 11) -13987 ENSMUSG00000042371.12 ENSMUSG00000042371 ENSMUST00000148584 Slc5a10 protein_coding Interval_93361 chr2 72408355 72409219 + 0 NA intron (ENSMUSG00000004085.14, intron 11 of 19) protein_coding-intron (ENSMUSG00000004085.14, intron 11 of 19) 48540 ENSMUSG00000084261.1 ENSMUSG00000084261 ENSMUST00000121019 Rpl36a-ps4 processed_pseudogene Interval_126653 chr5 91739733 91739964 + 0 NA Intergenic Intergenic -1769 ENSMUSG00000107261.1 ENSMUSG00000107261 ENSMUST00000202320 Trmt112-ps1 processed_pseudogene Interval_147615 chr7 70047105 70047794 + 0 NA Intergenic Intergenic -89545 ENSMUSG00000077166.1 ENSMUSG00000077166 ENSMUST00000103978 Gm24120 snoRNA Interval_22122 chr11 6474878 6477319 + 0 NA promoter-TSS (ENSMUSG00000094483.2) protein_coding-promoter-TSS (ENSMUSG00000094483.2) -181 ENSMUSG00000094483.2 ENSMUSG00000094483 ENSMUST00000179343 Purb protein_coding Interval_107694 chr3 111160048 111160340 + 0 NA Intergenic Intergenic 51694 ENSMUSG00000106487.1 ENSMUSG00000106487 ENSMUST00000199816 Gm43407 processed_pseudogene Interval_79807 chr18 35226250 35226774 + 0 NA intron (ENSMUSG00000037815.7, intron 7 of 15) protein_coding-intron (ENSMUSG00000037815.7, intron 9 of 17) -11488 ENSMUSG00000071862.3 ENSMUSG00000071862 ENSMUST00000236680 Lrrtm2 protein_coding Interval_38936 chr12 83957271 83957570 + 0 NA intron (ENSMUSG00000090843.2, intron 11 of 14) protein_coding-intron (ENSMUSG00000090843.2, intron 11 of 14) -6567 ENSMUSG00000096953.2 ENSMUSG00000096953 ENSMUST00000181399 Gm26571 antisense Interval_84073 chr19 7064548 7065011 + 0 NA intron (ENSMUSG00000036278.7, intron 1 of 10) protein_coding-intron (ENSMUSG00000036278.7, intron 1 of 10) 7969 ENSMUSG00000036278.7 ENSMUSG00000036278 ENSMUST00000040261 Macrod1 protein_coding Interval_46785 chr13 70386878 70387265 + 0 NA Intergenic Intergenic 35710 ENSMUSG00000114054.1 ENSMUSG00000114054 ENSMUST00000220989 Gm47706 processed_pseudogene Interval_58395 chr15 34105345 34105543 + 0 NA intron (ENSMUSG00000022255.16, intron 2 of 5) protein_coding-intron (ENSMUSG00000022255.16, intron 2 of 11) -21500 ENSMUSG00000115276.1 ENSMUSG00000115276 ENSMUST00000228274 9930017N22Rik TEC Interval_170010 chr9 103611535 103611795 + 0 NA intron (ENSMUSG00000042757.16, intron 2 of 3) protein_coding-intron (ENSMUSG00000042757.16, intron 1 of 4) -11501 ENSMUSG00000102441.1 ENSMUSG00000102441 ENSMUST00000195052 Gm38032 TEC Interval_54029 chr14 64612114 64612689 + 0 NA Intergenic Intergenic 21216 ENSMUSG00000092972.1 ENSMUSG00000092972 ENSMUST00000175231 Mir3078 miRNA Interval_167045 chr9 64810886 64812096 + 0 NA promoter-TSS (ENSMUSG00000053641.9) protein_coding-promoter-TSS (ENSMUSG00000053641.9) 70434 ENSMUSG00000089336.1 ENSMUSG00000089336 ENSMUST00000158711 Gm24347 snoRNA Interval_164923 chr9 43122348 43122915 + 0 NA Intergenic Intergenic -6095 ENSMUSG00000048503.7 ENSMUSG00000048503 ENSMUST00000216126 Tlcd5 protein_coding Interval_42083 chr13 8202337 8203569 + 0 NA promoter-TSS (ENSMUSG00000052551.16) protein_coding-promoter-TSS (ENSMUSG00000052551.16) 75 ENSMUSG00000052551.16 ENSMUSG00000052551 ENSMUST00000223148 Adarb2 protein_coding Interval_46780 chr13 70299883 70300133 + 0 NA Intergenic Intergenic 67186 ENSMUSG00000113463.1 ENSMUSG00000113463 ENSMUST00000222622 4930520P13Rik lincRNA Interval_68615 chr16 81459360 81459629 + 0 NA intron (ENSMUSG00000022762.18, intron 6 of 8) protein_coding-intron (ENSMUSG00000022762.18, intron 6 of 15) -6129 ENSMUSG00000022762.18 ENSMUSG00000022762 ENSMUST00000232550 Ncam2 protein_coding Interval_28122 chr11 72997731 72998398 + 0 NA Intergenic Intergenic -11727 ENSMUSG00000020787.14 ENSMUSG00000020787 ENSMUST00000148964 P2rx1 protein_coding Interval_97604 chr2 140359327 140360801 + 0 NA intron (ENSMUSG00000074764.11, intron 1 of 19) protein_coding-intron (ENSMUSG00000074764.11, intron 1 of 3) -63236 ENSMUSG00000074764.11 ENSMUSG00000074764 ENSMUST00000120133 Sel1l2 protein_coding Interval_81021 chr18 53033364 53033611 + 0 NA Intergenic Intergenic 80938 ENSMUSG00000118195.1 ENSMUSG00000118195 ENSMUST00000235787 Gm8572 processed_pseudogene Interval_13847 chr10 23811900 23813819 + 0 NA intron (ENSMUSG00000037455.16, intron 6 of 13) protein_coding-intron (ENSMUSG00000037455.16, intron 6 of 13) 15873 ENSMUSG00000037455.16 ENSMUSG00000037455 ENSMUST00000143931 Slc18b1 protein_coding Interval_13495 chr10 18669539 18669800 + 0 NA intron (ENSMUSG00000019852.7, intron 5 of 33) protein_coding-intron (ENSMUSG00000019852.7, intron 5 of 32) -73800 ENSMUSG00000111474.1 ENSMUSG00000111474 ENSMUST00000214043 Gm32926 antisense Interval_141571 chr6 129389099 129389421 + 0 NA Intergenic Intergenic -3386 ENSMUSG00000030158.12 ENSMUSG00000030158 ENSMUST00000112082 Clec12b protein_coding Interval_85465 chr19 26753727 26754350 + 0 NA intron (ENSMUSG00000024921.17, intron 1 of 5) protein_coding-intron (ENSMUSG00000024921.17, intron 28 of 32) 5636 ENSMUSG00000024921.17 ENSMUSG00000024921 ENSMUST00000208984 Smarca2 protein_coding Interval_4955 chr1 82924639 82925447 + 0 NA exon (ENSMUSG00000113973.1, exon 1 of 1) protein_coding-exon (ENSMUSG00000113973.1, exon 1 of 1) 126 ENSMUSG00000113973.1 ENSMUSG00000113973 ENSMUST00000223400 A030014E15Rik protein_coding Interval_5776 chr1 91742639 91744106 + 0 NA Intergenic Intergenic -58098 ENSMUSG00000007805.4 ENSMUSG00000007805 ENSMUST00000186075 Twist2 protein_coding Interval_164360 chr9 35864970 35865161 + 0 NA Intergenic Intergenic -14812 ENSMUSG00000098705.8 ENSMUSG00000098705 ENSMUST00000184555 Gm3428 processed_transcript Interval_38892 chr12 83649331 83649670 + 0 NA exon (ENSMUSG00000010608.15, exon 1 of 1) protein_coding-exon (ENSMUSG00000010608.15, exon 1 of 1) -13476 ENSMUSG00000010608.15 ENSMUSG00000010608 ENSMUST00000183181 Rbm25 protein_coding Interval_148311 chr7 80430259 80430529 + 0 NA exon (ENSMUSG00000081664.1, exon 1 of 1) processed_pseudogene-exon (ENSMUSG00000081664.1, exon 1 of 1) 1184 ENSMUSG00000081664.1 ENSMUSG00000081664 ENSMUST00000118776 Gm15544 processed_pseudogene Interval_16370 chr10 62526629 62526827 + 0 NA intron (ENSMUSG00000020077.14, intron 1 of 3) protein_coding-intron (ENSMUSG00000020077.14, intron 1 of 3) 697 ENSMUSG00000020077.14 ENSMUSG00000020077 ENSMUST00000162956 Srgn protein_coding Interval_34735 chr12 9040813 9041286 + 0 NA intron (ENSMUSG00000066637.2, intron 3 of 3) protein_coding-intron (ENSMUSG00000066637.2, intron 3 of 3) 11022 ENSMUSG00000066637.2 ENSMUSG00000066637 ENSMUST00000219470 Ttc32 protein_coding Interval_47237 chr13 78880962 78881233 + 0 NA Intergenic Intergenic 73695 ENSMUSG00000114557.1 ENSMUSG00000114557 ENSMUST00000225033 Gm8345 processed_pseudogene Interval_35877 chr12 31527633 31528059 + 0 NA intron (ENSMUSG00000020651.8, intron 17 of 20) protein_coding-intron (ENSMUSG00000020651.8, intron 17 of 20) 8727 ENSMUSG00000020651.8 ENSMUSG00000020651 ENSMUST00000218992 Slc26a4 protein_coding Interval_41543 chr12 116158905 116159110 + 0 NA Intergenic Intergenic 4802 ENSMUSG00000113002.1 ENSMUSG00000113002 ENSMUST00000222637 Gm48620 unprocessed_pseudogene Interval_71702 chr17 25555405 25556933 + 0 NA intron (ENSMUSG00000117445.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000117445.1, intron 1 of 1) 5044 ENSMUSG00000117445.1 ENSMUSG00000117445 ENSMUST00000235087 Gm50026 lincRNA Interval_129755 chr5 122142740 122143399 + 0 NA Intergenic Intergenic -15524 ENSMUSG00000004455.16 ENSMUSG00000004455 ENSMUST00000134719 Ppp1cc protein_coding Interval_41456 chr12 114357700 114357916 + 0 NA TTS (ENSMUSG00000076671.5) IG_V_gene-TTS (ENSMUSG00000076671.5) 252 ENSMUSG00000076671.5 ENSMUSG00000076671 ENSMUST00000125484 Ighv13-2 IG_V_gene Interval_144574 chr7 26251876 26253392 + 0 NA Intergenic Intergenic -2446 ENSMUSG00000092514.1 ENSMUSG00000092514 ENSMUST00000174052 Vmn1r-ps86 unprocessed_pseudogene Interval_171740 chr9 120645919 120646164 + 0 NA Intergenic Intergenic -28364 ENSMUSG00000111533.1 ENSMUSG00000111533 ENSMUST00000214671 Gm39458 processed_transcript Interval_42885 chr13 21068213 21069041 + 0 NA TTS (ENSMUSG00000042869.2) protein_coding-TTS (ENSMUSG00000042869.2) 6320 ENSMUSG00000042869.2 ENSMUSG00000042869 ENSMUST00000058168 Olfr1370 protein_coding Interval_130276 chr5 125364537 125365240 + 0 NA intron (ENSMUSG00000104932.1, intron 2 of 2) lincRNA-intron (ENSMUSG00000104932.1, intron 2 of 2) 3713 ENSMUSG00000104932.1 ENSMUSG00000104932 ENSMUST00000200649 Gm40323 lincRNA Interval_155042 chr8 25909849 25911001 + 0 NA intron (ENSMUSG00000031576.16, intron 19 of 26) protein_coding-intron (ENSMUSG00000031576.16, intron 19 of 26) 47989 ENSMUSG00000031576.16 ENSMUSG00000031576 ENSMUST00000126226 Kcnu1 protein_coding Interval_65238 chr16 20765294 20765918 + 0 NA Intergenic Intergenic 20298 ENSMUSG00000065372.1 ENSMUSG00000065372 ENSMUST00000083438 Gm22741 snRNA Interval_140526 chr6 119313866 119314127 + 0 NA intron (ENSMUSG00000041460.16, intron 26 of 37) protein_coding-intron (ENSMUSG00000041460.16, intron 26 of 37) 15208 ENSMUSG00000055003.14 ENSMUSG00000055003 ENSMUST00000124192 Lrtm2 protein_coding Interval_14762 chr10 39658870 39660228 + 0 NA intron (ENSMUSG00000087177.7, intron 2 of 3) antisense-intron (ENSMUSG00000087177.7, intron 1 of 3) -1123 ENSMUSG00000111358.1 ENSMUSG00000111358 ENSMUST00000214556 2900078I11Rik TEC Interval_78698 chr18 17874546 17875154 + 0 NA Intergenic Intergenic 46031 ENSMUSG00000117439.1 ENSMUSG00000117439 ENSMUST00000234539 Gm50083 processed_pseudogene Interval_134431 chr6 28603461 28603935 + 0 NA intron (ENSMUSG00000001424.14, intron 1 of 4) protein_coding-intron (ENSMUSG00000001424.14, intron 10 of 23) 35626 ENSMUSG00000103132.1 ENSMUSG00000103132 ENSMUST00000194736 Gm37978 TEC Interval_48798 chr13 103370620 103370826 + 0 NA Intergenic Intergenic 14471 ENSMUSG00000047643.5 ENSMUSG00000047643 ENSMUST00000052030 Gm5454 processed_pseudogene Interval_102651 chr3 28896882 28897242 + 0 NA intron (ENSMUSG00000074655.1, intron 2 of 14) protein_coding-intron (ENSMUSG00000074655.1, intron 2 of 14) 4445 ENSMUSG00000074655.1 ENSMUSG00000074655 ENSMUST00000099170 Gm1527 protein_coding Interval_99076 chr2 157026851 157027567 + 0 NA intron (ENSMUSG00000055485.6, intron 1 of 3) protein_coding-intron (ENSMUSG00000055485.6, intron 11 of 14) 263 ENSMUSG00000055485.6 ENSMUSG00000055485 ENSMUST00000133571 Soga1 protein_coding Interval_126146 chr5 79213266 79214459 + 0 NA Intergenic Intergenic -226335 ENSMUSG00000107308.1 ENSMUSG00000107308 ENSMUST00000200713 Gm43234 processed_pseudogene Interval_42229 chr13 10424140 10424344 + 0 NA intron (ENSMUSG00000097009.2, intron 5 of 7) antisense-intron (ENSMUSG00000097009.2, intron 5 of 7) -63395 ENSMUSG00000046159.16 ENSMUSG00000046159 ENSMUST00000190395 Chrm3 protein_coding Interval_149077 chr7 92916407 92917712 + 0 NA intron (ENSMUSG00000061119.7, intron 4 of 8) protein_coding-intron (ENSMUSG00000061119.7, intron 4 of 8) 14880 ENSMUSG00000109268.1 ENSMUSG00000109268 ENSMUST00000208883 9530078K11Rik TEC Interval_138165 chr6 85798945 85799285 + 0 NA intron (ENSMUSG00000090098.7, intron 6 of 8) transcribed_unprocessed_pseudogene-intron (ENSMUSG00000090098.7, intron 5 of 7) -8881 ENSMUSG00000105002.1 ENSMUSG00000105002 ENSMUST00000197176 Mir6375 miRNA Interval_158720 chr8 85534984 85535285 + 0 NA Intergenic Intergenic 15725 ENSMUSG00000031700.11 ENSMUSG00000031700 ENSMUST00000143846 Gpt2 protein_coding Interval_74154 chr17 46822885 46825235 + 0 NA intron (ENSMUSG00000036568.7, intron 5 of 11) protein_coding-intron (ENSMUSG00000036568.7, intron 4 of 10) 8254 ENSMUSG00000036568.7 ENSMUSG00000036568 ENSMUST00000233455 Bicral protein_coding Interval_63238 chr15 99872316 99873315 + 0 NA intron (ENSMUSG00000023022.14, intron 1 of 1) protein_coding-intron (ENSMUSG00000023022.14, intron 1 of 10) 1856 ENSMUSG00000023022.14 ENSMUSG00000023022 ENSMUST00000171450 Lima1 protein_coding Interval_53750 chr14 61497897 61498799 + 0 NA intron (ENSMUSG00000115656.1, intron 2 of 2) lincRNA-intron (ENSMUSG00000115656.1, intron 1 of 3) 5660 ENSMUSG00000115656.1 ENSMUSG00000115656 ENSMUST00000227369 4930556J02Rik lincRNA Interval_51545 chr14 30027531 30027945 + 0 NA TTS (ENSMUSG00000015970.19) protein_coding-TTS (ENSMUSG00000015970.19) 613 ENSMUSG00000114705.1 ENSMUSG00000114705 ENSMUST00000225370 Gm18760 processed_pseudogene Interval_40164 chr12 102157309 102157567 + 0 NA intron (ENSMUSG00000041771.14, intron 2 of 16) protein_coding-intron (ENSMUSG00000041771.14, intron 2 of 16) -27532 ENSMUSG00000090050.1 ENSMUSG00000090050 ENSMUST00000160954 Gm16339 antisense Interval_123809 chr5 35691309 35691511 + 0 NA Intergenic Intergenic -12316 ENSMUSG00000029096.15 ENSMUSG00000029096 ENSMUST00000200810 Htra3 protein_coding Interval_22083 chr11 6228746 6229217 + 0 NA exon (ENSMUSG00000020447.5, exon 2 of 19) protein_coding-exon (ENSMUSG00000020447.5, exon 2 of 19) 1162 ENSMUSG00000020447.5 ENSMUSG00000020447 ENSMUST00000004505 Npc1l1 protein_coding Interval_51490 chr14 28451727 28452034 + 0 NA intron (ENSMUSG00000040640.11, intron 15 of 15) protein_coding-intron (ENSMUSG00000040640.11, intron 15 of 15) -3641 ENSMUSG00000040640.11 ENSMUSG00000040640 ENSMUST00000224045 Erc2 protein_coding Interval_39806 chr12 98615679 98616839 + 0 NA Intergenic Intergenic -16751 ENSMUSG00000021007.14 ENSMUSG00000021007 ENSMUST00000152482 Spata7 protein_coding Interval_164961 chr9 43440787 43441086 + 0 NA intron (ENSMUSG00000111829.1, intron 2 of 2) lincRNA-intron (ENSMUSG00000111829.1, intron 2 of 2) 3502 ENSMUSG00000111829.1 ENSMUSG00000111829 ENSMUST00000216533 Gm47475 lincRNA Interval_72577 chr17 30764814 30765475 + 0 NA intron (ENSMUSG00000033826.10, intron 60 of 90) protein_coding-intron (ENSMUSG00000033826.10, intron 62 of 92) 16985 ENSMUSG00000094785.1 ENSMUSG00000094785 ENSMUST00000083205 Gm24661 snRNA Interval_48857 chr13 104089317 104089997 + 0 NA intron (ENSMUSG00000021710.11, intron 1 of 11) protein_coding-intron (ENSMUSG00000021710.11, intron 1 of 12) -20116 ENSMUSG00000042743.13 ENSMUSG00000042743 ENSMUST00000159574 Sgtb protein_coding Interval_160157 chr8 106801422 106803075 + 0 NA intron (ENSMUSG00000041949.6, intron 15 of 17) protein_coding-intron (ENSMUSG00000041949.6, intron 15 of 17) -68588 ENSMUSG00000031910.14 ENSMUSG00000031910 ENSMUST00000175987 Has3 protein_coding Interval_99966 chr2 166154024 166158110 + 0 NA promoter-TSS (ENSMUSG00000006800.14) protein_coding-promoter-TSS (ENSMUSG00000006800.14) -404 ENSMUSG00000006800.14 ENSMUSG00000006800 ENSMUST00000133395 Sulf2 protein_coding Interval_68158 chr16 66006371 66006789 + 0 NA Intergenic Intergenic 45355 ENSMUSG00000088181.1 ENSMUSG00000088181 ENSMUST00000157556 Gm22217 misc_RNA Interval_133016 chr5 149291390 149291682 + 0 NA Intergenic Intergenic -3668 ENSMUSG00000107317.1 ENSMUSG00000107317 ENSMUST00000200934 Gm19719 antisense Interval_78674 chr18 16743108 16744097 + 0 NA intron (ENSMUSG00000024304.14, intron 2 of 15) protein_coding-intron (ENSMUSG00000024304.14, intron 2 of 15) 14869 ENSMUSG00000085575.1 ENSMUSG00000085575 ENSMUST00000149095 Gm15485 antisense Interval_107519 chr3 108272886 108273320 + 0 NA intron (ENSMUSG00000068749.9, intron 3 of 3) protein_coding-intron (ENSMUSG00000068749.9, intron 8 of 8) 4228 ENSMUSG00000068749.9 ENSMUSG00000068749 ENSMUST00000129708 Psma5 protein_coding Interval_144034 chr7 19085673 19087404 + 0 NA promoter-TSS (ENSMUSG00000030409.16) protein_coding-promoter-TSS (ENSMUSG00000030409.16) -290 ENSMUSG00000092659.1 ENSMUSG00000092659 ENSMUST00000174918 Mir3100 miRNA Interval_86320 chr19 38699961 38700225 + 0 NA intron (ENSMUSG00000024998.17, intron 5 of 32) protein_coding-intron (ENSMUSG00000024998.17, intron 4 of 31) 4231 ENSMUSG00000117935.1 ENSMUSG00000117935 ENSMUST00000237606 Gm8717 processed_pseudogene Interval_149253 chr7 96703988 96704260 + 0 NA exon (ENSMUSG00000048078.16, exon 10 of 33) protein_coding-exon (ENSMUSG00000048078.16, exon 10 of 33) -75055 ENSMUSG00000085792.2 ENSMUSG00000085792 ENSMUST00000155217 Gm15414 antisense Interval_114214 chr4 67941095 67941733 + 0 NA Intergenic Intergenic 10533 ENSMUSG00000083087.1 ENSMUSG00000083087 ENSMUST00000117071 Gm11249 processed_pseudogene Interval_29973 chr11 88471686 88472284 + 0 NA intron (ENSMUSG00000069769.13, intron 2 of 5) protein_coding-intron (ENSMUSG00000069769.13, intron 7 of 13) -38471 ENSMUSG00000084411.2 ENSMUSG00000084411 ENSMUST00000120278 Gm11510 processed_pseudogene Interval_104026 chr3 57499709 57499930 + 0 NA intron (ENSMUSG00000027803.14, intron 3 of 6) protein_coding-intron (ENSMUSG00000027803.14, intron 3 of 6) -28413 ENSMUSG00000083538.1 ENSMUSG00000083538 ENSMUST00000120831 Gm16016 processed_pseudogene Interval_173792 chrX 104260023 104261718 + 0 NA Intergenic Intergenic -59685 ENSMUSG00000046449.15 ENSMUSG00000046449 ENSMUST00000056502 Nexmif protein_coding Interval_144894 chr7 28802014 28803491 + 0 NA Intergenic Intergenic 7745 ENSMUSG00000109420.1 ENSMUSG00000109420 ENSMUST00000209194 Gm44702 antisense Interval_59838 chr15 59637704 59638862 + 0 NA Intergenic Intergenic -10370 ENSMUSG00000032501.9 ENSMUSG00000032501 ENSMUST00000118228 Trib1 protein_coding Interval_105950 chr3 90264937 90266529 + 0 NA promoter-TSS (ENSMUSG00000042404.16) protein_coding-promoter-TSS (ENSMUSG00000042404.16) -1728 ENSMUSG00000042404.16 ENSMUSG00000042404 ENSMUST00000141139 Dennd4b protein_coding Interval_160127 chr8 106610932 106611172 + 0 NA intron (ENSMUSG00000000303.12, intron 2 of 16) protein_coding-intron (ENSMUSG00000000303.12, intron 2 of 15) 7673 ENSMUSG00000000303.12 ENSMUSG00000000303 ENSMUST00000136580 Cdh1 protein_coding Interval_23436 chr11 22613401 22613975 + 0 NA Intergenic Intergenic -3720 ENSMUSG00000086256.1 ENSMUSG00000086256 ENSMUST00000142151 Gm12052 lincRNA Interval_166456 chr9 59641059 59641493 + 0 NA exon (ENSMUSG00000025237.16, exon 10 of 14) protein_coding-intron (ENSMUSG00000025237.16, intron 19 of 22) -6921 ENSMUSG00000025237.16 ENSMUSG00000025237 ENSMUST00000217284 Parp6 protein_coding Interval_122502 chr5 23461868 23462332 + 0 NA intron (ENSMUSG00000029004.15, intron 2 of 12) protein_coding-intron (ENSMUSG00000029004.15, intron 2 of 25) -16455 ENSMUSG00000029004.15 ENSMUSG00000029004 ENSMUST00000194010 Kmt2e protein_coding Interval_174088 chrX 134591406 134591818 + 0 NA intron (ENSMUSG00000031266.7, intron 5 of 6) protein_coding-intron (ENSMUSG00000031266.7, intron 5 of 6) 5923 ENSMUSG00000079435.9 ENSMUSG00000079435 ENSMUST00000152266 Rpl36a protein_coding Interval_100889 chr2 173173899 173174393 + 0 NA Intergenic Intergenic 21073 ENSMUSG00000027513.11 ENSMUSG00000027513 ENSMUST00000136885 Pck1 protein_coding Interval_24365 chr11 32687261 32687458 + 0 NA intron (ENSMUSG00000020271.17, intron 3 of 4) protein_coding-intron (ENSMUSG00000020271.17, intron 2 of 13) 44455 ENSMUSG00000020271.17 ENSMUSG00000020271 ENSMUST00000143290 Fbxw11 protein_coding Interval_9578 chr1 159621539 159621767 + 0 NA intron (ENSMUSG00000073528.7, intron 1 of 1) processed_transcript-intron (ENSMUSG00000073528.7, intron 1 of 1) 26505 ENSMUSG00000103225.1 ENSMUSG00000103225 ENSMUST00000194545 Gm37731 TEC Interval_35394 chr12 21292108 21292320 + 0 NA intron (ENSMUSG00000054309.9, intron 3 of 12) protein_coding-intron (ENSMUSG00000054309.9, intron 3 of 17) 4287 ENSMUSG00000070166.1 ENSMUSG00000070166 ENSMUST00000093657 Gm25821 snoRNA Interval_150984 chr7 117401718 117401952 + 0 NA intron (ENSMUSG00000030657.11, intron 1 of 6) protein_coding-intron (ENSMUSG00000030657.11, intron 1 of 11) 19973 ENSMUSG00000108693.1 ENSMUSG00000108693 ENSMUST00000205957 Gm45153 TEC Interval_120465 chr4 148802279 148802512 + 0 NA Intergenic Intergenic 88692 ENSMUSG00000087273.1 ENSMUSG00000087273 ENSMUST00000139895 Gm13203 lincRNA Interval_80437 chr18 42211434 42211722 + 0 NA intron (ENSMUSG00000024493.9, intron 2 of 4) protein_coding-intron (ENSMUSG00000024493.9, intron 29 of 31) 3723 ENSMUSG00000024493.9 ENSMUSG00000024493 ENSMUST00000237520 Lars protein_coding Interval_74651 chr17 54351090 54351301 + 0 NA Intergenic Intergenic -3602 ENSMUSG00000117006.1 ENSMUSG00000117006 ENSMUST00000233783 Gm9224 processed_pseudogene Interval_120031 chr4 141440631 141442253 + 0 NA Intergenic Intergenic -3264 ENSMUSG00000006215.12 ENSMUSG00000006215 ENSMUST00000130482 Zbtb17 protein_coding Interval_132603 chr5 146674703 146675837 + 0 NA Intergenic Intergenic -31352 ENSMUSG00000106020.1 ENSMUSG00000106020 ENSMUST00000197707 4930573C15Rik lincRNA Interval_130627 chr5 129315487 129316043 + 0 NA Intergenic Intergenic -48355 ENSMUSG00000104681.1 ENSMUSG00000104681 ENSMUST00000199076 Gm43001 lincRNA Interval_88447 chr2 5125476 5125757 + 0 NA Intergenic Intergenic -12160 ENSMUSG00000026676.7 ENSMUSG00000026676 ENSMUST00000027988 Ccdc3 protein_coding Interval_61848 chr15 84631564 84632254 + 0 NA Intergenic Intergenic -37711 ENSMUSG00000036106.15 ENSMUSG00000036106 ENSMUST00000065499 Prr5 protein_coding Interval_56995 chr15 3676912 3678174 + 0 NA Intergenic Intergenic 69332 ENSMUSG00000098177.1 ENSMUSG00000098177 ENSMUST00000181990 Gm4823 processed_pseudogene Interval_130442 chr5 127659260 127661608 + 0 NA intron (ENSMUSG00000049971.17, intron 4 of 10) protein_coding-intron (ENSMUSG00000049971.17, intron 4 of 11) 28172 ENSMUSG00000049971.17 ENSMUSG00000049971 ENSMUST00000134529 Glt1d1 protein_coding Interval_89427 chr2 20622857 20623576 + 0 NA intron (ENSMUSG00000036617.17, intron 1 of 2) protein_coding-intron (ENSMUSG00000036617.17, intron 3 of 18) 63412 ENSMUSG00000098575.1 ENSMUSG00000098575 ENSMUST00000183963 Gm27446 misc_RNA Interval_103050 chr3 34734632 34735580 + 0 NA Intergenic Intergenic -18444 ENSMUSG00000105153.4 ENSMUSG00000105153 ENSMUST00000198364 Gm3143 lincRNA Interval_74466 chr17 51262338 51263295 + 0 NA Intergenic Intergenic -25754 ENSMUSG00000117168.1 ENSMUSG00000117168 ENSMUST00000233846 Gm49908 processed_pseudogene Interval_58749 chr15 37765809 37766303 + 0 NA promoter-TSS (ENSMUSG00000086313.1) sense_intronic-promoter-TSS (ENSMUSG00000086313.1) -655 ENSMUSG00000086313.1 ENSMUSG00000086313 ENSMUST00000156011 Gm15940 sense_intronic Interval_155333 chr8 31520614 31521719 + 0 NA Intergenic Intergenic 23520 ENSMUSG00000088162.1 ENSMUSG00000088162 ENSMUST00000157537 Gm23539 misc_RNA Interval_20515 chr10 118152947 118153207 + 0 NA TTS (ENSMUSG00000020212.14) protein_coding-TTS (ENSMUSG00000020212.14) 11266 ENSMUSG00000020212.14 ENSMUSG00000020212 ENSMUST00000217767 Mdm1 protein_coding Interval_108474 chr3 127512897 127513136 + 0 NA exon (ENSMUSG00000104957.1, exon 1 of 1) processed_pseudogene-exon (ENSMUSG00000104957.1, exon 1 of 1) 116 ENSMUSG00000104957.1 ENSMUSG00000104957 ENSMUST00000196862 Gm43354 processed_pseudogene Interval_170644 chr9 109870749 109871406 + 0 NA Intergenic Intergenic -12527 ENSMUSG00000032477.14 ENSMUSG00000032477 ENSMUST00000198219 Cdc25a protein_coding Interval_88947 chr2 13370169 13371219 + 0 NA intron (ENSMUSG00000026726.10, intron 31 of 66) protein_coding-intron (ENSMUSG00000026726.10, intron 31 of 66) 84933 ENSMUSG00000026726.10 ENSMUSG00000026726 ENSMUST00000148506 Cubn protein_coding Interval_169477 chr9 98027196 98027401 + 0 NA intron (ENSMUSG00000032452.12, intron 1 of 16) protein_coding-intron (ENSMUSG00000032452.12, intron 1 of 17) 5685 ENSMUSG00000032452.12 ENSMUSG00000032452 ENSMUST00000162295 Clstn2 protein_coding Interval_32762 chr11 110394461 110395351 + 0 NA Intergenic Intergenic -57190 ENSMUSG00000018800.14 ENSMUSG00000018800 ENSMUST00000148984 Abca5 protein_coding Interval_117899 chr4 126957579 126958218 + 0 NA intron (ENSMUSG00000042446.16, intron 1 of 3) protein_coding-intron (ENSMUSG00000042446.16, intron 1 of 29) 10001 ENSMUSG00000042446.16 ENSMUSG00000042446 ENSMUST00000123597 Zmym4 protein_coding Interval_60851 chr15 77140360 77141721 + 0 NA intron (ENSMUSG00000033565.18, intron 1 of 3) protein_coding-intron (ENSMUSG00000033565.18, intron 2 of 12) -25238 ENSMUSG00000116298.1 ENSMUSG00000116298 ENSMUST00000230697 4833412C15Rik TEC Interval_127416 chr5 103797834 103798163 + 0 NA intron (ENSMUSG00000029313.18, intron 3 of 12) protein_coding-intron (ENSMUSG00000029313.18, intron 3 of 19) 43434 ENSMUSG00000029313.18 ENSMUSG00000029313 ENSMUST00000152145 Aff1 protein_coding Interval_59050 chr15 42584271 42586182 + 0 NA intron (ENSMUSG00000022309.9, intron 1 of 8) protein_coding-intron (ENSMUSG00000022309.9, intron 1 of 8) -91099 ENSMUSG00000097805.2 ENSMUSG00000097805 ENSMUST00000228544 Gm17473 antisense Interval_135235 chr6 37691203 37692225 + 0 NA Intergenic Intergenic -4519 ENSMUSG00000107035.1 ENSMUSG00000107035 ENSMUST00000201305 Ybx1-ps2 processed_pseudogene Interval_161838 chr8 123119642 123119909 + 0 NA exon (ENSMUSG00000034796.14, exon 2 of 15) protein_coding-exon (ENSMUSG00000034796.14, exon 2 of 15) 2401 ENSMUSG00000034796.14 ENSMUSG00000034796 ENSMUST00000127431 Cpne7 protein_coding Interval_142875 chr6 146618916 146619459 + 0 NA TTS (ENSMUSG00000040234.16) protein_coding-TTS (ENSMUSG00000040234.16) -23404 ENSMUSG00000030291.12 ENSMUSG00000030291 ENSMUST00000075077 Med21 protein_coding Interval_127479 chr5 104339864 104340630 + 0 NA Intergenic Intergenic 14918 ENSMUSG00000053863.3 ENSMUSG00000053863 ENSMUST00000066207 Mepe protein_coding Interval_35404 chr12 21382505 21382704 + 0 NA Intergenic Intergenic 8839 ENSMUSG00000116819.1 ENSMUSG00000116819 ENSMUST00000232122 Gm49586 bidirectional_promoter_lncRNA Interval_87631 chr19 53830541 53831435 + 0 NA intron (ENSMUSG00000043639.15, intron 5 of 13) protein_coding-intron (ENSMUSG00000043639.15, intron 5 of 13) -5860 ENSMUSG00000089679.1 ENSMUSG00000089679 ENSMUST00000162724 Gm16299 antisense Interval_55849 chr14 101477010 101477578 + 0 NA intron (ENSMUSG00000033083.16, intron 9 of 20) protein_coding-intron (ENSMUSG00000033083.16, intron 9 of 13) 95720 ENSMUSG00000115319.1 ENSMUSG00000115319 ENSMUST00000228293 Gm34417 processed_pseudogene Interval_174347 chrX 146315251 146316557 + 0 NA Intergenic Intergenic -22069 ENSMUSG00000088050.1 ENSMUSG00000088050 ENSMUST00000157425 Gm26151 snRNA Interval_120687 chr4 150112231 150113340 + 0 NA TTS (ENSMUSG00000118596.1) unprocessed_pseudogene-TTS (ENSMUSG00000118596.1) 360 ENSMUSG00000118596.1 ENSMUSG00000118596 ENSMUST00000239356 AL606971.1 unprocessed_pseudogene Interval_97235 chr2 132485417 132485674 + 0 NA intron (ENSMUSG00000086250.1, intron 2 of 2) lincRNA-intron (ENSMUSG00000086250.1, intron 2 of 2) -5183 ENSMUSG00000086379.7 ENSMUSG00000086379 ENSMUST00000144501 1700026D11Rik antisense Interval_165006 chr9 43827567 43828431 + 0 NA intron (ENSMUSG00000032012.9, intron 2 of 2) protein_coding-intron (ENSMUSG00000032012.9, intron 2 of 2) 78003 ENSMUSG00000088044.1 ENSMUSG00000088044 ENSMUST00000157419 Gm23326 snRNA Interval_118844 chr4 134011189 134012520 + 0 NA intron (ENSMUSG00000050966.9, intron 1 of 1) protein_coding-intron (ENSMUSG00000050966.9, intron 2 of 3) -6293 ENSMUSG00000087288.1 ENSMUSG00000087288 ENSMUST00000137962 Gm13061 processed_transcript Interval_118056 chr4 128670512 128670969 + 0 NA intron (ENSMUSG00000028796.17, intron 1 of 6) protein_coding-intron (ENSMUSG00000028796.17, intron 1 of 14) 33269 ENSMUSG00000084891.1 ENSMUSG00000084891 ENSMUST00000141242 Gm12958 lincRNA Interval_116223 chr4 108832978 108835001 + 0 NA promoter-TSS (ENSMUSG00000028567.8) protein_coding-promoter-TSS (ENSMUSG00000028567.8) -3438 ENSMUSG00000028568.16 ENSMUSG00000028568 ENSMUST00000139464 Btf3l4 protein_coding Interval_70873 chr17 15510746 15511302 + 0 NA intron (ENSMUSG00000014767.17, intron 4 of 7) protein_coding-intron (ENSMUSG00000014767.17, intron 5 of 8) 8035 ENSMUSG00000014767.17 ENSMUSG00000014767 ENSMUST00000149518 Tbp protein_coding Interval_105698 chr3 88631881 88632396 + 0 NA promoter-TSS (ENSMUSG00000028059.16) protein_coding-promoter-TSS (ENSMUSG00000028059.16) -11077 ENSMUSG00000093390.1 ENSMUSG00000093390 ENSMUST00000177314 Gm20652 antisense Interval_119161 chr4 135920108 135921225 + 0 NA promoter-TSS (ENSMUSG00000028673.10) protein_coding-promoter-TSS (ENSMUSG00000028673.10) -9170 ENSMUSG00000028673.10 ENSMUSG00000028673 ENSMUST00000142111 Fuca1 protein_coding Interval_27412 chr11 67467225 67469356 + 0 NA intron (ENSMUSG00000033066.16, intron 1 of 6) protein_coding-intron (ENSMUSG00000033066.16, intron 1 of 13) 103505 ENSMUSG00000060180.12 ENSMUSG00000060180 ENSMUST00000181027 Myh13 protein_coding Interval_28587 chr11 76996916 76998970 + 0 NA promoter-TSS (ENSMUSG00000020838.12) protein_coding-promoter-TSS (ENSMUSG00000020838.12) 11930 ENSMUSG00000087398.1 ENSMUSG00000087398 ENSMUST00000138817 Gm12343 antisense Interval_153963 chr8 11529889 11530850 + 0 NA exon (ENSMUSG00000056228.10, exon 7 of 15) protein_coding-exon (ENSMUSG00000056228.10, exon 7 of 15) 17983 ENSMUSG00000031505.11 ENSMUSG00000031505 ENSMUST00000210316 Naxd protein_coding Interval_12469 chr1 193762405 193762627 + 0 NA Intergenic Intergenic -104493 ENSMUSG00000104182.1 ENSMUSG00000104182 ENSMUST00000194272 Gm21362 processed_pseudogene Interval_42531 chr13 14629892 14631404 + 0 NA intron (ENSMUSG00000039182.6, intron 1 of 1) protein_coding-intron (ENSMUSG00000039182.6, intron 1 of 1) 371 ENSMUSG00000039182.6 ENSMUSG00000039182 ENSMUST00000222052 AW209491 protein_coding Interval_141425 chr6 128179531 128179961 + 0 NA intron (ENSMUSG00000107879.2, intron 2 of 2) translated_unprocessed_pseudogene-intron (ENSMUSG00000107879.2, intron 2 of 2) -5531 ENSMUSG00000107810.1 ENSMUSG00000107810 ENSMUST00000203370 Gm18609 processed_pseudogene Interval_8744 chr1 150360128 150360444 + 0 NA Intergenic Intergenic -13515 ENSMUSG00000099447.1 ENSMUSG00000099447 ENSMUST00000186460 2310030A07Rik antisense Interval_35432 chr12 21645130 21645355 + 0 NA Intergenic Intergenic -14792 ENSMUSG00000113498.1 ENSMUSG00000113498 ENSMUST00000220842 Gm4036 unprocessed_pseudogene Interval_124408 chr5 45611800 45612141 + 0 NA intron (ENSMUSG00000015879.8, intron 1 of 15) protein_coding-intron (ENSMUSG00000015879.8, intron 1 of 15) -27411 ENSMUSG00000097825.5 ENSMUSG00000097825 ENSMUST00000200144 9630001P10Rik antisense Interval_15402 chr10 45485581 45487067 + 0 NA promoter-TSS (ENSMUSG00000063804.8) protein_coding-promoter-TSS (ENSMUSG00000063804.8) 71 ENSMUSG00000063804.8 ENSMUSG00000063804 ENSMUST00000214555 Lin28b protein_coding Interval_38066 chr12 75458301 75459358 + 0 NA TTS (ENSMUSG00000021051.10) protein_coding-TTS (ENSMUSG00000021051.10) -42048 ENSMUSG00000048982.3 ENSMUSG00000048982 ENSMUST00000051079 Gphb5 protein_coding Interval_74898 chr17 57148670 57149819 + 0 NA intron (ENSMUSG00000019489.7, intron 1 of 2) protein_coding-intron (ENSMUSG00000019489.7, intron 1 of 2) 533 ENSMUSG00000019489.7 ENSMUSG00000019489 ENSMUST00000019633 Cd70 protein_coding Interval_153522 chr8 3094988 3095354 + 0 NA TTS (ENSMUSG00000090795.1) unprocessed_pseudogene-TTS (ENSMUSG00000090795.1) 1802 ENSMUSG00000090795.1 ENSMUSG00000090795 ENSMUST00000169661 Gm7346 unprocessed_pseudogene Interval_31839 chr11 103253607 103253855 + 0 NA intron (ENSMUSG00000020941.7, intron 1 of 15) protein_coding-intron (ENSMUSG00000020941.7, intron 1 of 15) -13597 ENSMUSG00000020941.7 ENSMUSG00000020941 ENSMUST00000152677 Map3k14 protein_coding Interval_108521 chr3 127929429 127930810 + 0 NA intron (ENSMUSG00000104763.1, intron 3 of 4) lincRNA-intron (ENSMUSG00000104763.1, intron 3 of 4) 13947 ENSMUSG00000104763.1 ENSMUSG00000104763 ENSMUST00000198240 9830132P13Rik lincRNA Interval_34946 chr12 14963722 14964200 + 0 NA Intergenic Intergenic 33854 ENSMUSG00000114066.1 ENSMUSG00000114066 ENSMUST00000223036 Gm9202 processed_pseudogene Interval_89029 chr2 14738949 14740551 + 0 NA promoter-TSS (ENSMUSG00000104106.1) antisense-promoter-TSS (ENSMUSG00000104106.1) -28 ENSMUSG00000104106.1 ENSMUSG00000104106 ENSMUST00000192361 Gm10848 antisense Interval_91726 chr2 48885959 48886330 + 0 NA intron (ENSMUSG00000052155.5, intron 4 of 10) protein_coding-intron (ENSMUSG00000052155.5, intron 4 of 10) -4245 ENSMUSG00000052155.5 ENSMUSG00000052155 ENSMUST00000156681 Acvr2a protein_coding Interval_20831 chr10 121374141 121374758 + 0 NA exon (ENSMUSG00000034707.7, exon 3 of 14) protein_coding-exon (ENSMUSG00000034707.7, exon 3 of 14) -2625 ENSMUSG00000034707.7 ENSMUSG00000034707 ENSMUST00000219216 Gns protein_coding Interval_37822 chr12 72267739 72268232 + 0 NA intron (ENSMUSG00000021087.18, intron 3 of 8) protein_coding-intron (ENSMUSG00000021087.18, intron 3 of 8) -31437 ENSMUSG00000021087.18 ENSMUSG00000021087 ENSMUST00000221756 Rtn1 protein_coding Interval_78153 chr18 9419689 9419892 + 0 NA intron (ENSMUSG00000024286.8, intron 1 of 7) protein_coding-intron (ENSMUSG00000024286.8, intron 1 of 9) 17060 ENSMUSG00000117448.1 ENSMUSG00000117448 ENSMUST00000234877 Gm50055 TEC Interval_98560 chr2 153231682 153232376 + 0 NA exon (ENSMUSG00000051413.17, exon 3 of 3) protein_coding-exon (ENSMUSG00000051413.17, exon 3 of 3) 5879 ENSMUSG00000051413.17 ENSMUSG00000051413 ENSMUST00000109795 Plagl2 protein_coding Interval_54956 chr14 76471284 76472406 + 0 NA intron (ENSMUSG00000022010.19, intron 3 of 4) protein_coding-intron (ENSMUSG00000022010.19, intron 1 of 2) 53017 ENSMUSG00000022010.19 ENSMUSG00000022010 ENSMUST00000133224 Tsc22d1 protein_coding Interval_38249 chr12 76640669 76640884 + 0 NA intron (ENSMUSG00000021061.15, intron 2 of 31) protein_coding-intron (ENSMUSG00000021061.15, intron 2 of 35) -51204 ENSMUSG00000088356.1 ENSMUSG00000088356 ENSMUST00000157731 Gm24010 misc_RNA Interval_116655 chr4 116408333 116408953 + 0 NA intron (ENSMUSG00000003810.13, intron 2 of 5) protein_coding-intron (ENSMUSG00000003810.13, intron 3 of 28) -36911 ENSMUSG00000003810.13 ENSMUSG00000003810 ENSMUST00000151347 Mast2 protein_coding Interval_57760 chr15 19095620 19096126 + 0 NA Intergenic Intergenic -29304 ENSMUSG00000115815.1 ENSMUSG00000115815 ENSMUST00000226382 Gm8328 processed_pseudogene Interval_101756 chr3 9429428 9430592 + 0 NA exon (ENSMUSG00000040209.12, exon 9 of 9) protein_coding-exon (ENSMUSG00000040209.12, exon 9 of 9) 26930 ENSMUSG00000097365.7 ENSMUSG00000097365 ENSMUST00000181930 C030034L19Rik lincRNA Interval_83173 chr18 82537945 82538650 + 0 NA intron (ENSMUSG00000041607.17, intron 3 of 5) protein_coding-intron (ENSMUSG00000041607.17, intron 3 of 6) -14276 ENSMUSG00000061684.6 ENSMUSG00000061684 ENSMUST00000130005 Rpl21-ps8 processed_pseudogene Interval_68746 chr16 85448701 85449496 + 0 NA intron (ENSMUSG00000041134.15, intron 2 of 2) protein_coding-intron (ENSMUSG00000041134.15, intron 2 of 2) 101319 ENSMUSG00000041134.15 ENSMUSG00000041134 ENSMUST00000162621 Cyyr1 protein_coding Interval_140357 chr6 117166752 117169584 + 0 NA promoter-TSS (ENSMUSG00000061353.11) protein_coding-promoter-TSS (ENSMUSG00000061353.11) -409 ENSMUSG00000061353.11 ENSMUSG00000061353 ENSMUST00000073043 Cxcl12 protein_coding Interval_44799 chr13 48723654 48724003 + 0 NA Intergenic Intergenic 39753 ENSMUSG00000113297.1 ENSMUSG00000113297 ENSMUST00000222192 Rpl17-ps6 processed_pseudogene Interval_32208 chr11 106167021 106168301 + 0 NA TTS (ENSMUSG00000069631.14) protein_coding-TTS (ENSMUSG00000069631.14) 7468 ENSMUSG00000075480.2 ENSMUSG00000075480 ENSMUST00000100326 Gm10840 TEC Interval_134945 chr6 34002661 34004082 + 0 NA Intergenic Intergenic -10960 ENSMUSG00000087441.1 ENSMUSG00000087441 ENSMUST00000155496 Gm13853 lincRNA Interval_159826 chr8 104118266 104118577 + 0 NA intron (ENSMUSG00000031871.9, intron 2 of 11) protein_coding-intron (ENSMUSG00000031871.9, intron 2 of 11) 7114 ENSMUSG00000031871.9 ENSMUSG00000031871 ENSMUST00000209911 Cdh5 protein_coding Interval_169042 chr9 90905832 90906080 + 0 NA Intergenic Intergenic 2241 ENSMUSG00000102076.1 ENSMUSG00000102076 ENSMUST00000188131 Gm20561 processed_pseudogene Interval_13581 chr10 19914984 19915795 + 0 NA Intergenic Intergenic -7738 ENSMUSG00000020003.16 ENSMUSG00000020003 ENSMUST00000214951 Pex7 protein_coding Interval_30396 chr11 94127219 94128307 + 0 NA Intergenic Intergenic -5739 ENSMUSG00000086003.7 ENSMUSG00000086003 ENSMUST00000125406 B230206L02Rik processed_transcript Interval_104502 chr3 66924118 66924453 + 0 NA Intergenic Intergenic -16519 ENSMUSG00000103318.1 ENSMUSG00000103318 ENSMUST00000194313 Gm38356 processed_pseudogene Interval_81045 chr18 53274054 53274256 + 0 NA intron (ENSMUSG00000024535.16, intron 1 of 3) protein_coding-intron (ENSMUSG00000024535.16, intron 1 of 7) 28427 ENSMUSG00000024535.16 ENSMUSG00000024535 ENSMUST00000025417 Snx24 protein_coding Interval_168731 chr9 86502887 86503791 + 0 NA promoter-TSS (ENSMUSG00000034973.16) protein_coding-promoter-TSS (ENSMUSG00000034973.16) 36185 ENSMUSG00000034973.16 ENSMUSG00000034973 ENSMUST00000187427 Dop1a protein_coding Interval_140684 chr6 120548112 120549122 + 0 NA Intergenic Intergenic -6179 ENSMUSG00000107744.1 ENSMUSG00000107744 ENSMUST00000204672 1700072O05Rik lincRNA Interval_79993 chr18 36524748 36525862 + 0 NA TTS (ENSMUSG00000118214.1) lincRNA-TTS (ENSMUSG00000118214.1) -2846 ENSMUSG00000024485.16 ENSMUSG00000024485 ENSMUST00000235382 Slc4a9 protein_coding Interval_32106 chr11 105275196 105275405 + 0 NA intron (ENSMUSG00000020694.17, intron 17 of 17) protein_coding-intron (ENSMUSG00000020694.17, intron 18 of 20) -65532 ENSMUSG00000020695.14 ENSMUSG00000020695 ENSMUST00000151135 Mrc2 protein_coding Interval_10268 chr1 167708812 167709249 + 0 NA intron (ENSMUSG00000026686.14, intron 3 of 8) protein_coding-intron (ENSMUSG00000026686.14, intron 2 of 7) 19793 ENSMUSG00000026686.14 ENSMUSG00000026686 ENSMUST00000028003 Lmx1a protein_coding Interval_93297 chr2 71750153 71752044 + 0 NA TTS (ENSMUSG00000086641.1) processed_transcript-TTS (ENSMUSG00000086641.1) 1173 ENSMUSG00000084794.1 ENSMUSG00000084794 ENSMUST00000157059 Gm13662 processed_transcript Interval_28846 chr11 78730536 78731188 + 0 NA Intergenic Intergenic 20867 ENSMUSG00000049489.5 ENSMUSG00000049489 ENSMUST00000059468 Ccnq protein_coding Interval_78633 chr18 15959218 15959710 + 0 NA Intergenic Intergenic -28904 ENSMUSG00000043223.7 ENSMUSG00000043223 ENSMUST00000155839 Gm4835 processed_pseudogene Interval_133653 chr6 8090029 8090289 + 0 NA intron (ENSMUSG00000068794.7, intron 18 of 34) protein_coding-intron (ENSMUSG00000068794.7, intron 18 of 34) 90015 ENSMUSG00000068794.7 ENSMUSG00000068794 ENSMUST00000213284 Col28a1 protein_coding Interval_150041 chr7 105339595 105340311 + 0 NA intron (ENSMUSG00000043948.2, intron 1 of 1) protein_coding-intron (ENSMUSG00000043948.2, intron 1 of 1) 2317 ENSMUSG00000043948.2 ENSMUSG00000043948 ENSMUST00000057528 Olfr691 protein_coding Interval_17667 chr10 78752327 78753323 + 0 NA exon (ENSMUSG00000078442.3, exon 1 of 7) protein_coding-exon (ENSMUSG00000078442.3, exon 1 of 7) 240 ENSMUSG00000078442.3 ENSMUSG00000078442 ENSMUST00000105383 Ccdc105 protein_coding Interval_132211 chr5 143369643 143370410 + 0 NA promoter-TSS (ENSMUSG00000010825.17) protein_coding-promoter-TSS (ENSMUSG00000010825.17) -2948 ENSMUSG00000010825.17 ENSMUSG00000010825 ENSMUST00000138948 Grid2ip protein_coding Interval_132153 chr5 142985250 142986099 + 0 NA Intergenic Intergenic 25298 ENSMUSG00000029581.14 ENSMUSG00000029581 ENSMUST00000135293 Fscn1 protein_coding Interval_60084 chr15 64852447 64852634 + 0 NA intron (ENSMUSG00000022376.8, intron 2 of 6) protein_coding-intron (ENSMUSG00000022376.8, intron 2 of 17) 34846 ENSMUSG00000094296.1 ENSMUSG00000094296 ENSMUST00000180105 Gm21798 protein_coding Interval_37649 chr12 70818066 70819429 + 0 NA intron (ENSMUSG00000113900.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000113900.1, intron 1 of 2) 6598 ENSMUSG00000113900.1 ENSMUSG00000113900 ENSMUST00000222338 Gm40437 lincRNA Interval_15875 chr10 58651247 58653501 + 0 NA intron (ENSMUSG00000003227.4, intron 1 of 11) protein_coding-intron (ENSMUSG00000003227.4, intron 1 of 11) 23280 ENSMUSG00000003227.4 ENSMUSG00000003227 ENSMUST00000003312 Edar protein_coding Interval_140193 chr6 115227316 115227969 + 0 NA intron (ENSMUSG00000092004.1, intron 1 of 1) protein_coding-intron (ENSMUSG00000009394.13, intron 1 of 12) 299 ENSMUSG00000092004.1 ENSMUSG00000092004 ENSMUST00000166681 Gm17482 protein_coding Interval_12992 chr10 8929186 8929567 + 0 NA intron (ENSMUSG00000111731.1, intron 2 of 3) lincRNA-intron (ENSMUSG00000111731.1, intron 2 of 3) -22573 ENSMUSG00000111674.1 ENSMUSG00000111674 ENSMUST00000213841 Gm48728 lincRNA Interval_80164 chr18 37969273 37970291 + 0 NA promoter-TSS (ENSMUSG00000038524.13) protein_coding-promoter-TSS (ENSMUSG00000038524.13) -254 ENSMUSG00000038524.13 ENSMUSG00000038524 ENSMUST00000171253 Fchsd1 protein_coding Interval_142643 chr6 144526353 144526844 + 0 NA intron (ENSMUSG00000041540.16, intron 3 of 6) protein_coding-intron (ENSMUSG00000041540.16, intron 3 of 13) 45373 ENSMUSG00000087157.1 ENSMUSG00000087157 ENSMUST00000156443 Sox5os2 antisense Interval_43577 chr13 33748849 33749045 + 0 NA Intergenic Intergenic 7707 ENSMUSG00000097054.1 ENSMUSG00000097054 ENSMUST00000181011 Gm11395 unprocessed_pseudogene Interval_124776 chr5 53871678 53872410 + 0 NA intron (ENSMUSG00000039178.9, intron 13 of 20) protein_coding-intron (ENSMUSG00000039178.9, intron 13 of 20) -19060 ENSMUSG00000039178.9 ENSMUSG00000039178 ENSMUST00000202880 Tbc1d19 protein_coding Interval_51655 chr14 31150215 31150696 + 0 NA exon (ENSMUSG00000042286.13, exon 33 of 69) protein_coding-exon (ENSMUSG00000042286.13, exon 33 of 69) -7458 ENSMUSG00000042286.13 ENSMUSG00000042286 ENSMUST00000159532 Stab1 protein_coding Interval_40749 chr12 108127067 108127301 + 0 NA intron (ENSMUSG00000056770.15, intron 1 of 2) protein_coding-intron (ENSMUSG00000056770.15, intron 6 of 12) 35825 ENSMUSG00000056770.15 ENSMUSG00000056770 ENSMUST00000125916 Setd3 protein_coding Interval_72368 chr17 29439622 29439849 + 0 NA intron (ENSMUSG00000117427.1, intron 2 of 2) lincRNA-intron (ENSMUSG00000117427.1, intron 1 of 3) -4978 ENSMUSG00000117575.1 ENSMUSG00000117575 ENSMUST00000234181 Gm36486 processed_transcript Interval_10632 chr1 172340657 172341609 + 0 NA promoter-TSS (ENSMUSG00000044708.5) protein_coding-promoter-TSS (ENSMUSG00000044708.5) -77 ENSMUSG00000044708.5 ENSMUSG00000044708 ENSMUST00000056136 Kcnj10 protein_coding Interval_5534 chr1 89633857 89634529 + 0 NA exon (ENSMUSG00000055013.16, exon 6 of 18) protein_coding-exon (ENSMUSG00000055013.16, exon 6 of 18) 49701 ENSMUSG00000102009.6 ENSMUSG00000102009 ENSMUST00000187011 4933400F21Rik processed_transcript Interval_130042 chr5 123864196 123864700 + 0 NA exon (ENSMUSG00000045502.6, exon 1 of 1) protein_coding-exon (ENSMUSG00000045502.6, exon 1 of 1) 1051 ENSMUSG00000045502.6 ENSMUSG00000045502 ENSMUST00000057145 Hcar2 protein_coding Interval_149942 chr7 103004228 103004822 + 0 NA intron (ENSMUSG00000110033.1, intron 1 of 1) unprocessed_pseudogene-intron (ENSMUSG00000110033.1, intron 1 of 1) 672 ENSMUSG00000110033.1 ENSMUSG00000110033 ENSMUST00000210954 AC161520.1 unprocessed_pseudogene Interval_148710 chr7 84427390 84427706 + 0 NA Intergenic Intergenic 11678 ENSMUSG00000108864.1 ENSMUSG00000108864 ENSMUST00000208637 Gm44933 lincRNA Interval_5121 chr1 85814063 85814781 + 0 NA intron (ENSMUSG00000036707.16, intron 2 of 3) protein_coding-intron (ENSMUSG00000036707.16, intron 2 of 9) -28658 ENSMUSG00000036707.16 ENSMUSG00000036707 ENSMUST00000187623 Cab39 protein_coding Interval_63935 chr16 4648081 4650297 + 0 NA exon (ENSMUSG00000039646.5, exon 2 of 2) protein_coding-exon (ENSMUSG00000039646.5, exon 2 of 2) 9221 ENSMUSG00000039646.5 ENSMUSG00000039646 ENSMUST00000138044 Vasn protein_coding Interval_21346 chr10 128094534 128095400 + 0 NA intron (ENSMUSG00000040054.17, intron 1 of 13) protein_coding-intron (ENSMUSG00000040054.17, intron 1 of 29) 3385 ENSMUSG00000040054.17 ENSMUSG00000040054 ENSMUST00000219980 Baz2a protein_coding Interval_81368 chr18 59565606 59565941 + 0 NA Intergenic Intergenic -13857 ENSMUSG00000098287.1 ENSMUSG00000098287 ENSMUST00000183687 Mir6355 miRNA Interval_61716 chr15 83545633 83546549 + 0 NA TTS (ENSMUSG00000048755.9) protein_coding-TTS (ENSMUSG00000048755.9) -7415 ENSMUSG00000116217.1 ENSMUSG00000116217 ENSMUST00000229232 Gm46495 processed_pseudogene Interval_1738 chr1 33289116 33289321 + 0 NA Intergenic Intergenic -4458 ENSMUSG00000065223.1 ENSMUSG00000065223 ENSMUST00000083289 Gm25792 snRNA Interval_114215 chr4 68022888 68023310 + 0 NA promoter-TSS (ENSMUSG00000086364.1) lincRNA-promoter-TSS (ENSMUSG00000086364.1) 68 ENSMUSG00000086364.1 ENSMUSG00000086364 ENSMUST00000126187 Gm11751 lincRNA Interval_30723 chr11 96127122 96128395 + 0 NA Intergenic Intergenic -6028 ENSMUSG00000038756.13 ENSMUSG00000038756 ENSMUST00000107680 Ttll6 protein_coding Interval_91852 chr2 50296184 50297219 + 0 NA promoter-TSS (ENSMUSG00000026766.16) protein_coding-promoter-TSS (ENSMUSG00000026766.16) -204 ENSMUSG00000085862.2 ENSMUSG00000085862 ENSMUST00000228816 Gm13483 lincRNA Interval_28729 chr11 77965326 77966287 + 0 NA intron (ENSMUSG00000000632.13, intron 4 of 15) protein_coding-intron (ENSMUSG00000000632.13, intron 4 of 15) 34767 ENSMUSG00000000632.13 ENSMUSG00000000632 ENSMUST00000126866 Sez6 protein_coding Interval_78171 chr18 9723598 9724098 + 0 NA intron (ENSMUSG00000036103.9, intron 2 of 9) protein_coding-intron (ENSMUSG00000036103.9, intron 2 of 10) 2822 ENSMUSG00000091285.2 ENSMUSG00000091285 ENSMUST00000171339 Gm17430 processed_pseudogene Interval_36829 chr12 54482498 54483148 + 0 NA Intergenic Intergenic 34256 ENSMUSG00000113947.1 ENSMUSG00000113947 ENSMUST00000223133 Gm10465 lincRNA Interval_61233 chr15 80129027 80129321 + 0 NA Intergenic Intergenic -3953 ENSMUSG00000022414.8 ENSMUSG00000022414 ENSMUST00000229320 Tab1 protein_coding Interval_90374 chr2 30058454 30058700 + 0 NA intron (ENSMUSG00000054766.13, intron 1 of 6) protein_coding-intron (ENSMUSG00000054766.13, intron 1 of 6) -3177 ENSMUSG00000054766.13 ENSMUSG00000054766 ENSMUST00000147590 Set protein_coding Interval_8470 chr1 139680439 139680896 + 0 NA Intergenic Intergenic 9063 ENSMUSG00000096117.1 ENSMUSG00000096117 ENSMUST00000158349 Gm26271 snRNA Interval_29115 chr11 80410264 80411308 + 0 NA Intergenic Intergenic -17900 ENSMUSG00000017428.16 ENSMUSG00000017428 ENSMUST00000125591 Psmd11 protein_coding Interval_145112 chr7 30099268 30099632 + 0 NA exon (ENSMUSG00000049421.13, exon 1 of 1) protein_coding-exon (ENSMUSG00000049421.13, exon 1 of 1) 1293 ENSMUSG00000049421.13 ENSMUSG00000049421 ENSMUST00000182136 Zfp260 protein_coding Interval_74749 chr17 56302928 56304822 + 0 NA promoter-TSS (ENSMUSG00000001228.14) protein_coding-promoter-TSS (ENSMUSG00000001228.14) -532 ENSMUSG00000001228.14 ENSMUSG00000001228 ENSMUST00000139654 Uhrf1 protein_coding Interval_140210 chr6 115564692 115564924 + 0 NA intron (ENSMUSG00000042389.13, intron 6 of 11) protein_coding-intron (ENSMUSG00000042389.13, intron 6 of 11) -9640 ENSMUSG00000042389.13 ENSMUSG00000042389 ENSMUST00000143520 Tsen2 protein_coding Interval_86629 chr19 42151903 42152465 + 0 NA TTS (ENSMUSG00000044345.9) protein_coding-TTS (ENSMUSG00000044345.9) 4476 ENSMUSG00000044345.9 ENSMUSG00000044345 ENSMUST00000184186 Marveld1 protein_coding Interval_122699 chr5 24732960 24734766 + 0 NA Intergenic Intergenic 17461 ENSMUSG00000038135.4 ENSMUSG00000038135 ENSMUST00000047119 Crygn protein_coding Interval_144199 chr7 19914300 19915272 + 0 NA promoter-TSS (ENSMUSG00000040511.14) protein_coding-promoter-TSS (ENSMUSG00000040511.14) -24 ENSMUSG00000040511.14 ENSMUSG00000040511 ENSMUST00000159261 Pvr protein_coding Interval_83440 chr18 85539364 85539744 + 0 NA Intergenic Intergenic 177171 ENSMUSG00000117854.1 ENSMUSG00000117854 ENSMUST00000237113 Gm7612 processed_pseudogene Interval_48458 chr13 99169592 99170742 + 0 NA Intergenic Intergenic -14656 ENSMUSG00000050919.9 ENSMUSG00000050919 ENSMUST00000056558 Zfp366 protein_coding Interval_19718 chr10 108286334 108287817 + 0 NA Intergenic Intergenic 37481 ENSMUSG00000019907.10 ENSMUSG00000019907 ENSMUST00000219559 Ppp1r12a protein_coding Interval_138063 chr6 84925972 84926274 + 0 NA intron (ENSMUSG00000033769.16, intron 5 of 13) protein_coding-intron (ENSMUSG00000033769.16, intron 6 of 16) 5000 ENSMUSG00000108012.1 ENSMUSG00000108012 ENSMUST00000204154 Gm44012 antisense Interval_161912 chr8 123715664 123716388 + 0 NA intron (ENSMUSG00000092329.1, intron 1 of 15) protein_coding-intron (ENSMUSG00000092329.1, intron 1 of 15) -17932 ENSMUSG00000110599.1 ENSMUSG00000110599 ENSMUST00000212339 6030466F02Rik lincRNA Interval_68137 chr16 65601956 65602135 + 0 NA Intergenic Intergenic 11374 ENSMUSG00000116578.1 ENSMUSG00000116578 ENSMUST00000232570 Gm49633 processed_pseudogene Interval_75593 chr17 69120363 69121460 + 0 NA intron (ENSMUSG00000024044.19, intron 1 of 3) protein_coding-intron (ENSMUSG00000024044.19, intron 1 of 3) -6089 ENSMUSG00000024044.19 ENSMUSG00000024044 ENSMUST00000223565 Epb41l3 protein_coding Interval_165429 chr9 47803385 47804546 + 0 NA intron (ENSMUSG00000032076.20, intron 5 of 8) protein_coding-intron (ENSMUSG00000032076.20, intron 5 of 8) -27228 ENSMUSG00000111155.1 ENSMUSG00000111155 ENSMUST00000216522 Gm47197 TEC Interval_123669 chr5 34397002 34398506 + 0 NA intron (ENSMUSG00000037210.16, intron 1 of 20) protein_coding-intron (ENSMUSG00000037210.16, intron 1 of 20) -33465 ENSMUSG00000037210.16 ENSMUSG00000037210 ENSMUST00000181379 Fam193a protein_coding Interval_47930 chr13 94454287 94454476 + 0 NA intron (ENSMUSG00000021686.6, intron 13 of 26) protein_coding-intron (ENSMUSG00000021686.6, intron 13 of 26) -18482 ENSMUSG00000021686.6 ENSMUSG00000021686 ENSMUST00000220505 Ap3b1 protein_coding Interval_71321 chr17 22207439 22207755 + 0 NA intron (ENSMUSG00000096433.2, intron 2 of 4) protein_coding-intron (ENSMUSG00000096433.2, intron 2 of 4) 18019 ENSMUSG00000096433.2 ENSMUSG00000096433 ENSMUST00000179996 Zfp994 protein_coding Interval_63762 chr15 103283110 103285020 + 0 NA intron (ENSMUSG00000060992.9, intron 1 of 7) protein_coding-intron (ENSMUSG00000060992.9, intron 1 of 8) -1060 ENSMUSG00000065560.1 ENSMUSG00000065560 ENSMUST00000083626 Mir148b miRNA Interval_149158 chr7 95494452 95495029 + 0 NA Intergenic Intergenic 19794 ENSMUSG00000108429.1 ENSMUSG00000108429 ENSMUST00000206820 Gm44603 processed_pseudogene Interval_90479 chr2 30711605 30712458 + 0 NA Intergenic Intergenic 8026 ENSMUSG00000075416.5 ENSMUSG00000075416 ENSMUST00000131207 Gm14488 processed_transcript Interval_95365 chr2 106958826 106959108 + 0 NA Intergenic Intergenic 10310 ENSMUSG00000027122.15 ENSMUSG00000027122 ENSMUST00000124598 Arl14ep protein_coding Interval_117131 chr4 119834050 119834630 + 0 NA intron (ENSMUSG00000028634.17, intron 1 of 1) protein_coding-intron (ENSMUSG00000028634.17, intron 1 of 8) -175559 ENSMUSG00000032978.14 ENSMUSG00000032978 ENSMUST00000044426 Guca2b protein_coding Interval_173449 chrX 93968497 93968986 + 0 NA promoter-TSS (ENSMUSG00000081044.8) protein_coding-promoter-TSS (ENSMUSG00000081044.8) 59 ENSMUSG00000081044.8 ENSMUSG00000081044 ENSMUST00000120624 AU015836 protein_coding Interval_125159 chr5 64992091 64992745 + 0 NA intron (ENSMUSG00000029185.14, intron 2 of 3) protein_coding-intron (ENSMUSG00000029185.14, intron 2 of 13) 19768 ENSMUSG00000106186.1 ENSMUSG00000106186 ENSMUST00000197119 Gm43627 TEC Interval_150761 chr7 114171240 114172329 + 0 NA Intergenic Intergenic 37304 ENSMUSG00000110407.1 ENSMUSG00000110407 ENSMUST00000211484 Gm45454 processed_pseudogene Interval_133911 chr6 15163817 15164420 + 0 NA intron (ENSMUSG00000029563.16, intron 3 of 3) protein_coding-intron (ENSMUSG00000029563.16, intron 3 of 18) -240863 ENSMUSG00000093317.1 ENSMUSG00000093317 ENSMUST00000175576 Gm25470 miRNA Interval_133281 chr5 151075426 151075782 + 0 NA intron (ENSMUSG00000107011.1, intron 4 of 5) protein_coding-intron (ENSMUSG00000016128.14, intron 3 of 13) 33131 ENSMUSG00000016128.14 ENSMUSG00000016128 ENSMUST00000202866 Stard13 protein_coding Interval_36796 chr12 54110379 54111650 + 0 NA Intergenic Intergenic -4129 ENSMUSG00000112549.1 ENSMUSG00000112549 ENSMUST00000219480 Gm35818 lincRNA Interval_23687 chr11 24604889 24605113 + 0 NA intron (ENSMUSG00000087085.1, intron 2 of 3) lincRNA-intron (ENSMUSG00000087085.1, intron 2 of 3) -50943 ENSMUSG00000088502.1 ENSMUSG00000088502 ENSMUST00000157877 Gm22787 snRNA Interval_2716 chr1 43809028 43810529 + 0 NA intron (ENSMUSG00000057363.12, intron 1 of 6) protein_coding-intron (ENSMUSG00000057363.12, intron 1 of 14) 17972 ENSMUSG00000057363.12 ENSMUSG00000057363 ENSMUST00000128261 Uxs1 protein_coding Interval_155891 chr8 40675038 40675471 + 0 NA intron (ENSMUSG00000046723.4, intron 1 of 1) protein_coding-intron (ENSMUSG00000046723.4, intron 1 of 1) 177 ENSMUSG00000046723.4 ENSMUSG00000046723 ENSMUST00000051614 Adam24 protein_coding Interval_163231 chr9 18779049 18780121 + 0 NA Intergenic Intergenic -15589 ENSMUSG00000054141.5 ENSMUSG00000054141 ENSMUST00000066997 Olfr24 protein_coding Interval_29185 chr11 81220425 81220799 + 0 NA intron (ENSMUSG00000020704.13, intron 1 of 9) protein_coding-intron (ENSMUSG00000020704.13, intron 1 of 9) 148209 ENSMUSG00000085130.1 ENSMUSG00000085130 ENSMUST00000150536 Gm11417 antisense Interval_48086 chr13 95900503 95901240 + 0 NA Intergenic Intergenic -3751 ENSMUSG00000065866.1 ENSMUSG00000065866 ENSMUST00000083932 Gm24032 snRNA Interval_19823 chr10 109764864 109765069 + 0 NA promoter-TSS (ENSMUSG00000020181.18) protein_coding-promoter-TSS (ENSMUSG00000020181.18) 116187 ENSMUSG00000112260.1 ENSMUSG00000112260 ENSMUST00000219153 3110043J17Rik TEC Interval_130548 chr5 128720325 128721072 + 0 NA intron (ENSMUSG00000029423.10, intron 2 of 13) protein_coding-intron (ENSMUSG00000029423.10, intron 2 of 13) 15331 ENSMUSG00000105483.1 ENSMUSG00000105483 ENSMUST00000196722 4930553I04Rik TEC Interval_121144 chr4 153496852 153497583 + 0 NA Intergenic Intergenic -15038 ENSMUSG00000039546.9 ENSMUSG00000039546 ENSMUST00000149177 Ajap1 protein_coding Interval_124078 chr5 38102828 38104273 + 0 NA intron (ENSMUSG00000029125.14, intron 2 of 8) protein_coding-intron (ENSMUSG00000029125.14, intron 2 of 10) 32547 ENSMUSG00000107276.1 ENSMUSG00000107276 ENSMUST00000202512 Gm42858 TEC Interval_127522 chr5 104824964 104825641 + 0 NA intron (ENSMUSG00000072774.10, intron 1 of 4) protein_coding-intron (ENSMUSG00000072774.10, intron 1 of 4) 34491 ENSMUSG00000072774.10 ENSMUSG00000072774 ENSMUST00000191135 Zfp951 protein_coding Interval_115748 chr4 103272257 103273780 + 0 NA intron (ENSMUSG00000028520.12, intron 1 of 7) protein_coding-intron (ENSMUSG00000028520.12, intron 2 of 8) 17845 ENSMUSG00000028520.12 ENSMUSG00000028520 ENSMUST00000097944 4921539E11Rik protein_coding Interval_100200 chr2 167604912 167605833 + 0 NA intron (ENSMUSG00000085596.1, intron 3 of 3) processed_transcript-intron (ENSMUSG00000085596.1, intron 3 of 3) 13977 ENSMUSG00000081511.1 ENSMUSG00000081511 ENSMUST00000118482 Gm11475 processed_pseudogene Interval_51106 chr14 23266678 23267003 + 0 NA Intergenic Intergenic -54304 ENSMUSG00000114803.1 ENSMUSG00000114803 ENSMUST00000225611 Gm46443 processed_pseudogene Interval_24114 chr11 30460090 30460496 + 0 NA intron (ENSMUSG00000040919.13, intron 1 of 5) protein_coding-intron (ENSMUSG00000040919.13, intron 1 of 4) 11534 ENSMUSG00000040919.13 ENSMUSG00000040919 ENSMUST00000152718 4930505A04Rik protein_coding Interval_139618 chr6 103372630 103372956 + 0 NA Intergenic Intergenic -92807 ENSMUSG00000108296.1 ENSMUSG00000108296 ENSMUST00000203805 Gm44295 processed_pseudogene Interval_60135 chr15 66107599 66107968 + 0 NA intron (ENSMUSG00000056258.9, intron 1 of 14) protein_coding-intron (ENSMUSG00000056258.9, intron 1 of 14) 33231 ENSMUSG00000099013.1 ENSMUSG00000099013 ENSMUST00000184492 Gm27153 antisense Interval_136686 chr6 57747205 57747432 + 0 NA intron (ENSMUSG00000037788.14, intron 4 of 4) protein_coding-intron (ENSMUSG00000037788.14, intron 4 of 4) 44231 ENSMUSG00000062190.12 ENSMUSG00000062190 ENSMUST00000153777 Lancl2 protein_coding Interval_133168 chr5 150289566 150289940 + 0 NA intron (ENSMUSG00000106719.1, intron 3 of 3) protein_coding-intron (ENSMUSG00000056602.12, intron 1 of 60) -5635 ENSMUSG00000056602.12 ENSMUSG00000056602 ENSMUST00000201628 Fry protein_coding Interval_76271 chr17 78637369 78637804 + 0 NA Intergenic Intergenic 63658 ENSMUSG00000024076.10 ENSMUSG00000024076 ENSMUST00000232864 Vit protein_coding Interval_127137 chr5 100524619 100525278 + 0 NA intron (ENSMUSG00000035297.14, intron 2 of 5) protein_coding-intron (ENSMUSG00000035297.14, intron 1 of 9) 6491 ENSMUSG00000035297.14 ENSMUSG00000035297 ENSMUST00000123559 Cops4 protein_coding Interval_169835 chr9 102375453 102375938 + 0 NA Intergenic Intergenic 2577 ENSMUSG00000088138.1 ENSMUSG00000088138 ENSMUST00000157513 Gm22894 snRNA Interval_172170 chrX 8161887 8162648 + 0 NA intron (ENSMUSG00000039201.10, intron 2 of 4) protein_coding-intron (ENSMUSG00000039201.10, intron 3 of 5) 13914 ENSMUSG00000039201.10 ENSMUSG00000039201 ENSMUST00000143984 Tbc1d25 protein_coding Interval_125821 chr5 74641263 74641716 + 0 NA intron (ENSMUSG00000029228.15, intron 2 of 10) protein_coding-intron (ENSMUSG00000029228.15, intron 1 of 10) 36140 ENSMUSG00000029228.15 ENSMUSG00000029228 ENSMUST00000140084 Lnx1 protein_coding Interval_26349 chr11 57026617 57026898 + 0 NA intron (ENSMUSG00000020524.16, intron 2 of 15) protein_coding-intron (ENSMUSG00000020524.16, intron 2 of 15) -149761 ENSMUSG00000020524.16 ENSMUSG00000020524 ENSMUST00000173531 Gria1 protein_coding Interval_39154 chr12 85487462 85487966 + 0 NA Intergenic Intergenic 13023 ENSMUSG00000021250.13 ENSMUSG00000021250 ENSMUST00000134311 Fos protein_coding Interval_71217 chr17 21252244 21253174 + 0 NA Intergenic Intergenic -3702 ENSMUSG00000050102.6 ENSMUSG00000050102 ENSMUST00000060603 Vmn1r235 protein_coding Interval_154199 chr8 13361487 13362314 + 0 NA intron (ENSMUSG00000038482.11, intron 3 of 10) protein_coding-intron (ENSMUSG00000038482.11, intron 2 of 10) 23079 ENSMUSG00000038482.11 ENSMUSG00000038482 ENSMUST00000209945 Tfdp1 protein_coding Interval_158186 chr8 79615465 79616130 + 0 NA Intergenic Intergenic -45287 ENSMUSG00000036990.13 ENSMUSG00000036990 ENSMUST00000172614 Otud4 protein_coding Interval_105919 chr3 90090566 90092109 + 0 NA TTS (ENSMUSG00000027940.18) protein_coding-TTS (ENSMUSG00000027940.18) 3898 ENSMUSG00000027940.18 ENSMUSG00000027940 ENSMUST00000136125 Tpm3 protein_coding Interval_82550 chr18 75084005 75086373 + 0 NA intron (ENSMUSG00000035765.10, intron 8 of 16) protein_coding-intron (ENSMUSG00000035765.10, intron 8 of 16) -40236 ENSMUSG00000035765.10 ENSMUSG00000035765 ENSMUST00000236840 Dym protein_coding Interval_11015 chr1 178405640 178407040 + 0 NA intron (ENSMUSG00000026495.8, intron 1 of 6) protein_coding-intron (ENSMUSG00000026495.8, intron 1 of 6) 255 ENSMUSG00000026495.8 ENSMUSG00000026495 ENSMUST00000192905 Efcab2 protein_coding Interval_23468 chr11 22798700 22800854 + 0 NA intron (ENSMUSG00000051650.11, intron 2 of 5) protein_coding-intron (ENSMUSG00000051650.11, intron 2 of 5) -12530 ENSMUSG00000082576.1 ENSMUSG00000082576 ENSMUST00000118614 Gm12058 processed_pseudogene Interval_110888 chr4 9585439 9585957 + 0 NA intron (ENSMUSG00000028207.18, intron 2 of 3) protein_coding-intron (ENSMUSG00000028207.18, intron 12 of 23) 58019 ENSMUSG00000028207.18 ENSMUSG00000028207 ENSMUST00000130617 Asph protein_coding Interval_75537 chr17 67861453 67862363 + 0 NA intron (ENSMUSG00000024043.13, intron 5 of 7) protein_coding-intron (ENSMUSG00000024043.13, intron 11 of 17) -10845 ENSMUSG00000090955.1 ENSMUSG00000090955 ENSMUST00000166414 Gm17097 processed_pseudogene Interval_171728 chr9 120542154 120542538 + 0 NA intron (ENSMUSG00000041608.8, intron 2 of 10) protein_coding-intron (ENSMUSG00000041608.8, intron 2 of 10) -15688 ENSMUSG00000041608.8 ENSMUSG00000041608 ENSMUST00000143579 Entpd3 protein_coding Interval_82727 chr18 76222012 76222760 + 0 NA Intergenic Intergenic 1797 ENSMUSG00000118294.1 ENSMUSG00000118294 ENSMUST00000237277 Gm9028 processed_pseudogene Interval_10879 chr1 176598556 176598846 + 0 NA Intergenic Intergenic 43857 ENSMUSG00000103471.1 ENSMUSG00000103471 ENSMUST00000193453 Gm17966 processed_pseudogene Interval_91868 chr2 50770391 50770850 + 0 NA Intergenic Intergenic -112553 ENSMUSG00000082846.1 ENSMUSG00000082846 ENSMUST00000120738 Gm13484 processed_pseudogene Interval_149332 chr7 97492393 97492603 + 0 NA intron (ENSMUSG00000025133.9, intron 4 of 11) protein_coding-intron (ENSMUSG00000025133.9, intron 4 of 22) -29310 ENSMUSG00000065360.1 ENSMUSG00000065360 ENSMUST00000083426 Gm24412 snoRNA Interval_80281 chr18 38795818 38796661 + 0 NA intron (ENSMUSG00000118193.1, intron 1 of 5) protein_coding-intron (ENSMUSG00000118193.1, intron 1 of 5) -23892 ENSMUSG00000081773.1 ENSMUSG00000081773 ENSMUST00000119217 Gm8302 processed_pseudogene Interval_32684 chr11 109622290 109623047 + 0 NA intron (ENSMUSG00000086733.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000086733.1, intron 1 of 1) 6348 ENSMUSG00000086733.1 ENSMUSG00000086733 ENSMUST00000141559 Gm11685 lincRNA Interval_134603 chr6 29881997 29882478 + 0 NA intron (ENSMUSG00000029772.17, intron 4 of 14) protein_coding-intron (ENSMUSG00000029772.17, intron 6 of 16) 5558 ENSMUSG00000029772.17 ENSMUSG00000029772 ENSMUST00000128837 Ahcyl2 protein_coding Interval_93867 chr2 77750552 77750866 + 0 NA intron (ENSMUSG00000027016.17, intron 1 of 3) protein_coding-intron (ENSMUSG00000027016.17, intron 1 of 3) -47437 ENSMUSG00000027016.17 ENSMUSG00000027016 ENSMUST00000129077 Zfp385b protein_coding Interval_141671 chr6 133084330 133085454 + 0 NA Intergenic Intergenic 2996 ENSMUSG00000107602.1 ENSMUSG00000107602 ENSMUST00000203593 Gm18691 unprocessed_pseudogene Interval_142318 chr6 140617458 140618136 + 0 NA Intergenic Intergenic 4626 ENSMUSG00000107750.1 ENSMUSG00000107750 ENSMUST00000204392 Gm44013 TEC Interval_29439 chr11 84025902 84026790 + 0 NA promoter-TSS (ENSMUSG00000034940.15) protein_coding-promoter-TSS (ENSMUSG00000034940.15) 7145 ENSMUSG00000034940.15 ENSMUSG00000034940 ENSMUST00000132887 Synrg protein_coding Interval_109722 chr3 146317869 146318078 + 0 NA Intergenic Intergenic -6447 ENSMUSG00000105209.1 ENSMUSG00000105209 ENSMUST00000197740 Gm43334 TEC Interval_155523 chr8 34091336 34091542 + 0 NA intron (ENSMUSG00000031516.11, intron 3 of 3) protein_coding-intron (ENSMUSG00000031516.11, intron 6 of 6) 3599 ENSMUSG00000031516.11 ENSMUSG00000031516 ENSMUST00000143411 Dctn6 protein_coding Interval_74405 chr17 49967346 49969063 + 0 NA Intergenic Intergenic -4623 ENSMUSG00000118535.1 ENSMUSG00000118535 ENSMUST00000239097 AC133946.1 unitary_pseudogene Interval_75166 chr17 64248486 64248884 + 0 NA Intergenic Intergenic 72930 ENSMUSG00000080455.1 ENSMUSG00000080455 ENSMUST00000116805 Gm24194 miRNA Interval_101606 chr3 7651200 7652510 + 0 NA intron (ENSMUSG00000097804.1, intron 1 of 2) antisense-intron (ENSMUSG00000097804.1, intron 1 of 2) -38128 ENSMUSG00000040329.14 ENSMUSG00000040329 ENSMUST00000191681 Il7 protein_coding Interval_105032 chr3 79921099 79921305 + 0 NA intron (ENSMUSG00000027955.16, intron 2 of 2) protein_coding-intron (ENSMUSG00000027955.16, intron 2 of 3) -34396 ENSMUSG00000102191.1 ENSMUSG00000102191 ENSMUST00000195082 Gm36569 antisense Interval_132100 chr5 142764408 142764732 + 0 NA exon (ENSMUSG00000039477.16, exon 3 of 3) protein_coding-exon (ENSMUSG00000039477.16, exon 3 of 3) 1452 ENSMUSG00000039477.16 ENSMUSG00000039477 ENSMUST00000198181 Tnrc18 protein_coding Interval_155163 chr8 27150616 27150978 + 0 NA exon (ENSMUSG00000031488.14, exon 4 of 5) protein_coding-exon (ENSMUSG00000031488.14, exon 4 of 5) 7887 ENSMUSG00000097262.2 ENSMUSG00000097262 ENSMUST00000181424 4933416M07Rik antisense Interval_34267 chr11 121837724 121838173 + 0 NA intron (ENSMUSG00000039198.8, intron 3 of 3) protein_coding-intron (ENSMUSG00000039198.8, intron 3 of 3) 7701 ENSMUSG00000039198.8 ENSMUSG00000039198 ENSMUST00000036690 Ptchd3 protein_coding Interval_95555 chr2 112239058 112240659 + 0 NA exon (ENSMUSG00000027134.4, exon 1 of 14) protein_coding-exon (ENSMUSG00000027134.4, exon 1 of 14) -1627 ENSMUSG00000027134.4 ENSMUSG00000027134 ENSMUST00000129503 Lpcat4 protein_coding Interval_147782 chr7 73534969 73535817 + 0 NA intron (ENSMUSG00000078671.11, intron 1 of 4) protein_coding-intron (ENSMUSG00000078671.11, intron 2 of 8) -2620 ENSMUSG00000108563.1 ENSMUSG00000108563 ENSMUST00000206776 Gm44686 antisense Interval_63552 chr15 101990348 101991163 + 0 NA Intergenic Intergenic -13457 ENSMUSG00000116010.1 ENSMUSG00000116010 ENSMUST00000230247 Gm36026 lincRNA Interval_157843 chr8 74872210 74872638 + 0 NA promoter-TSS (ENSMUSG00000031621.9) protein_coding-promoter-TSS (ENSMUSG00000031621.9) -1116 ENSMUSG00000031621.9 ENSMUSG00000031621 ENSMUST00000174427 Isx protein_coding Interval_10642 chr1 172402838 172403145 + 0 NA Intergenic Intergenic -12002 ENSMUSG00000102278.1 ENSMUSG00000102278 ENSMUST00000193540 Gm37145 TEC Interval_88687 chr2 9749369 9749606 + 0 NA Intergenic Intergenic -118146 ENSMUSG00000104276.1 ENSMUSG00000104276 ENSMUST00000191950 Gm37866 TEC Interval_114181 chr4 66078151 66078451 + 0 NA intron (ENSMUSG00000028373.16, intron 3 of 21) protein_coding-intron (ENSMUSG00000028373.16, intron 4 of 22) -275548 ENSMUSG00000083080.1 ENSMUSG00000083080 ENSMUST00000119808 Gm11484 processed_pseudogene Interval_167790 chr9 72720668 72721576 + 0 NA TTS (ENSMUSG00000032216.15) protein_coding-TTS (ENSMUSG00000032216.15) 4162 ENSMUSG00000104066.1 ENSMUSG00000104066 ENSMUST00000195098 Gm37955 TEC Interval_21000 chr10 123133956 123134713 + 0 NA intron (ENSMUSG00000020124.10, intron 8 of 21) protein_coding-intron (ENSMUSG00000020124.10, intron 7 of 20) 44350 ENSMUSG00000112879.1 ENSMUSG00000112879 ENSMUST00000219693 Gm47726 processed_pseudogene Interval_68220 chr16 69254330 69255284 + 0 NA Intergenic Intergenic 255361 ENSMUSG00000116931.1 ENSMUSG00000116931 ENSMUST00000232625 Gm18496 processed_pseudogene Interval_1066 chr1 14742520 14744197 + 0 NA Intergenic Intergenic -9579 ENSMUSG00000054493.2 ENSMUSG00000054493 ENSMUST00000067599 Gm9947 antisense Interval_123557 chr5 33480607 33482435 + 0 NA Intergenic Intergenic -44057 ENSMUSG00000107248.1 ENSMUSG00000107248 ENSMUST00000200726 Gm43851 lincRNA Interval_166032 chr9 55616123 55616311 + 0 NA intron (ENSMUSG00000034007.10, intron 26 of 32) protein_coding-intron (ENSMUSG00000034007.10, intron 24 of 30) -60505 ENSMUSG00000064472.1 ENSMUSG00000064472 ENSMUST00000082538 Gm23407 snRNA Interval_123212 chr5 30675220 30676878 + 0 NA Intergenic Intergenic 9051 ENSMUSG00000029177.9 ENSMUSG00000029177 ENSMUST00000134372 Cenpa protein_coding Interval_65716 chr16 25947407 25947774 + 0 NA Intergenic Intergenic -8885 ENSMUSG00000090257.1 ENSMUSG00000090257 ENSMUST00000161614 Gm4524 antisense Interval_9348 chr1 156489840 156490593 + 0 NA Intergenic Intergenic -15976 ENSMUSG00000026600.12 ENSMUSG00000026600 ENSMUST00000188027 Soat1 protein_coding Interval_93525 chr2 73791664 73794658 + 0 NA Intergenic Intergenic -16001 ENSMUSG00000081062.1 ENSMUSG00000081062 ENSMUST00000118445 Gm13640 processed_pseudogene Interval_23515 chr11 23056111 23056678 + 0 NA Intergenic Intergenic 6838 ENSMUSG00000088010.1 ENSMUSG00000088010 ENSMUST00000157385 Gm23740 rRNA Interval_18873 chr10 91633560 91633794 + 0 NA Intergenic Intergenic 7213 ENSMUSG00000111782.1 ENSMUSG00000111782 ENSMUST00000216093 Gm47091 processed_pseudogene Interval_15205 chr10 43360778 43361301 + 0 NA intron (ENSMUSG00000038240.13, intron 3 of 7) protein_coding-intron (ENSMUSG00000038240.13, intron 3 of 7) -1971 ENSMUSG00000110903.1 ENSMUSG00000110903 ENSMUST00000213353 Gm47857 TEC Interval_166586 chr9 61110026 61110878 + 0 NA promoter-TSS (ENSMUSG00000111169.1) lincRNA-promoter-TSS (ENSMUSG00000111169.1) 66 ENSMUSG00000111169.1 ENSMUSG00000111169 ENSMUST00000215586 Gm34004 lincRNA Interval_44454 chr13 44915718 44916462 + 0 NA intron (ENSMUSG00000038518.15, intron 14 of 15) protein_coding-intron (ENSMUSG00000038518.15, intron 17 of 18) -77807 ENSMUSG00000088189.1 ENSMUSG00000088189 ENSMUST00000157564 Gm22213 snoRNA Interval_81629 chr18 62536312 62537301 + 0 NA intron (ENSMUSG00000042211.7, intron 3 of 5) protein_coding-intron (ENSMUSG00000042211.7, intron 2 of 21) -16077 ENSMUSG00000042211.7 ENSMUSG00000042211 ENSMUST00000235807 Fbxo38 protein_coding Interval_109798 chr3 147224951 147225723 + 0 NA Intergenic Intergenic -32419 ENSMUSG00000103099.1 ENSMUSG00000103099 ENSMUST00000193340 Gm6074 processed_pseudogene Interval_53518 chr14 58070379 58072669 + 0 NA intron (ENSMUSG00000021974.15, intron 1 of 2) protein_coding-intron (ENSMUSG00000021974.15, intron 1 of 2) -4983 ENSMUSG00000021974.15 ENSMUSG00000021974 ENSMUST00000166770 Fgf9 protein_coding Interval_158468 chr8 83897236 83897451 + 0 NA Intergenic Intergenic -3392 ENSMUSG00000013033.16 ENSMUSG00000013033 ENSMUST00000131018 Adgrl1 protein_coding Interval_26809 chr11 60752411 60752803 + 0 NA promoter-TSS (ENSMUSG00000002814.15) protein_coding-promoter-TSS (ENSMUSG00000002814.15) 16746 ENSMUSG00000089581.1 ENSMUSG00000089581 ENSMUST00000158956 Gm23341 snRNA Interval_109074 chr3 135580303 135582253 + 0 NA Intergenic Intergenic 18087 ENSMUSG00000028164.15 ENSMUSG00000028164 ENSMUST00000153412 Manba protein_coding Interval_143559 chr7 12802365 12804162 + 0 NA intron (ENSMUSG00000070822.5, intron 1 of 6) protein_coding-intron (ENSMUSG00000070822.5, intron 1 of 6) -4099 ENSMUSG00000109724.1 ENSMUSG00000109724 ENSMUST00000210455 Gm18194 transcribed_processed_pseudogene Interval_146469 chr7 46179427 46180471 + 0 NA promoter-TSS (ENSMUSG00000040136.10) protein_coding-promoter-TSS (ENSMUSG00000040136.10) 84 ENSMUSG00000040136.10 ENSMUSG00000040136 ENSMUST00000210511 Abcc8 protein_coding Interval_128538 chr5 113896305 113896529 + 0 NA intron (ENSMUSG00000004530.12, intron 1 of 1) protein_coding-intron (ENSMUSG00000004530.12, intron 1 of 10) 8481 ENSMUSG00000105071.1 ENSMUSG00000105071 ENSMUST00000200487 Gm43336 TEC Interval_81128 chr18 54527416 54528142 + 0 NA Intergenic Intergenic -31195 ENSMUSG00000118103.1 ENSMUSG00000118103 ENSMUST00000237202 4933434P08Rik lincRNA Interval_118082 chr4 128857456 128859038 + 0 NA intron (ENSMUSG00000085701.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000085701.1, intron 1 of 1) 11149 ENSMUSG00000084011.1 ENSMUSG00000084011 ENSMUST00000120199 Gm12969 processed_pseudogene Interval_22837 chr11 16513969 16516934 + 0 NA exon (ENSMUSG00000084347.3, exon 1 of 1) processed_pseudogene-exon (ENSMUSG00000084347.3, exon 1 of 1) 918 ENSMUSG00000084347.3 ENSMUSG00000084347 ENSMUST00000120718 Akt2-ps processed_pseudogene Interval_167849 chr9 73055050 73056282 + 0 NA intron (ENSMUSG00000032202.11, intron 1 of 3) protein_coding-intron (ENSMUSG00000032202.11, intron 1 of 5) -5285 ENSMUSG00000098468.1 ENSMUSG00000098468 ENSMUST00000184223 Gm27186 processed_pseudogene Interval_152642 chr7 135651794 135652250 + 0 NA promoter-TSS (ENSMUSG00000041836.10) protein_coding-promoter-TSS (ENSMUSG00000041836.10) 261 ENSMUSG00000097471.8 ENSMUSG00000097471 ENSMUST00000210953 5830432E09Rik antisense Interval_166166 chr9 57201170 57201560 + 0 NA Intergenic Intergenic 26090 ENSMUSG00000100282.1 ENSMUSG00000100282 ENSMUST00000185243 1700041C23Rik lincRNA Interval_105918 chr3 90086375 90087118 + 0 NA promoter-TSS (ENSMUSG00000027940.18) protein_coding-promoter-TSS (ENSMUSG00000027940.18) -693 ENSMUSG00000027940.18 ENSMUSG00000027940 ENSMUST00000136125 Tpm3 protein_coding Interval_174561 chrX 157817251 157819146 + 0 NA promoter-TSS (ENSMUSG00000047485.6) protein_coding-promoter-TSS (ENSMUSG00000047485.6) -237 ENSMUSG00000047485.6 ENSMUSG00000047485 ENSMUST00000087157 Klhl34 protein_coding Interval_149858 chr7 102041324 102041590 + 0 NA intron (ENSMUSG00000070426.12, intron 2 of 3) protein_coding-intron (ENSMUSG00000070426.12, intron 2 of 8) -23298 ENSMUSG00000070427.4 ENSMUSG00000070427 ENSMUST00000211502 Il18bp protein_coding Interval_104109 chr3 58656974 58657546 + 0 NA Intergenic Intergenic 5207 ENSMUSG00000105021.1 ENSMUSG00000105021 ENSMUST00000198523 Gm8234 processed_pseudogene Interval_107511 chr3 108210003 108211187 + 0 NA promoter-TSS (ENSMUSG00000048997.17) protein_coding-promoter-TSS (ENSMUSG00000048997.17) -127 ENSMUSG00000048997.17 ENSMUSG00000048997 ENSMUST00000196823 Atxn7l2 protein_coding Interval_151116 chr7 118639447 118640599 + 0 NA intron (ENSMUSG00000030650.18, intron 6 of 20) protein_coding-intron (ENSMUSG00000030650.18, intron 3 of 17) 17509 ENSMUSG00000030650.18 ENSMUSG00000030650 ENSMUST00000057320 Tmc5 protein_coding Interval_148165 chr7 79577744 79579507 + 0 NA exon (ENSMUSG00000108373.1, exon 1 of 2) lincRNA-exon (ENSMUSG00000108373.1, exon 1 of 2) 443 ENSMUSG00000108373.1 ENSMUSG00000108373 ENSMUST00000205591 Gm45168 lincRNA Interval_54743 chr14 74618909 74619270 + 0 NA Intergenic Intergenic -21751 ENSMUSG00000034997.5 ENSMUSG00000034997 ENSMUST00000036653 Htr2a protein_coding Interval_50097 chr14 7963150 7963551 + 0 NA Intergenic Intergenic 6062 ENSMUSG00000109649.1 ENSMUSG00000109649 ENSMUST00000211339 Gm45521 protein_coding Interval_30543 chr11 95022587 95023346 + 0 NA intron (ENSMUSG00000047181.12, intron 7 of 9) protein_coding-intron (ENSMUSG00000047181.12, intron 7 of 9) -9793 ENSMUSG00000087630.1 ENSMUSG00000087630 ENSMUST00000138855 Gm11513 antisense Interval_67220 chr16 44511044 44511307 + 0 NA intron (ENSMUSG00000022687.12, intron 3 of 18) protein_coding-intron (ENSMUSG00000022687.12, intron 3 of 18) 46954 ENSMUSG00000093046.1 ENSMUSG00000093046 ENSMUST00000175305 Mir3081 miRNA Interval_98565 chr2 153274768 153277057 + 0 NA Intergenic Intergenic -15501 ENSMUSG00000027475.9 ENSMUSG00000027475 ENSMUST00000028977 Kif3b protein_coding Interval_41340 chr12 112938153 112939404 + 0 NA exon (ENSMUSG00000002804.4, exon 3 of 4) protein_coding-exon (ENSMUSG00000002804.4, exon 3 of 4) 226 ENSMUSG00000002804.4 ENSMUSG00000002804 ENSMUST00000221497 Nudt14 protein_coding Interval_86715 chr19 42905823 42907868 + 0 NA intron (ENSMUSG00000074852.4, intron 9 of 11) protein_coding-intron (ENSMUSG00000074852.4, intron 9 of 11) 127735 ENSMUSG00000090235.1 ENSMUSG00000090235 ENSMUST00000160001 Gm16244 processed_transcript Interval_3776 chr1 63044594 63044826 + 0 NA intron (ENSMUSG00000040865.15, intron 9 of 12) protein_coding-intron (ENSMUSG00000040865.15, intron 9 of 12) 6496 ENSMUSG00000081617.1 ENSMUSG00000081617 ENSMUST00000122045 Rps13-ps7 processed_pseudogene Interval_81874 chr18 65561694 65562058 + 0 NA Intergenic Intergenic 15768 ENSMUSG00000118179.1 ENSMUSG00000118179 ENSMUST00000237213 Gm50247 processed_pseudogene Interval_17317 chr10 75832073 75832465 + 0 NA TTS (ENSMUSG00000033318.7) protein_coding-TTS (ENSMUSG00000033318.7) 5098 ENSMUSG00000033318.7 ENSMUSG00000033318 ENSMUST00000218745 Gstt2 protein_coding Interval_136301 chr6 52782142 52782554 + 0 NA intron (ENSMUSG00000063568.11, intron 3 of 4) protein_coding-intron (ENSMUSG00000063568.11, intron 3 of 4) -59418 ENSMUSG00000108036.1 ENSMUSG00000108036 ENSMUST00000203787 Gm43967 processed_pseudogene Interval_44701 chr13 47277721 47277971 + 0 NA Intergenic Intergenic 63093 ENSMUSG00000114958.1 ENSMUSG00000114958 ENSMUST00000224746 Gm48612 lincRNA Interval_125195 chr5 65264473 65264735 + 0 NA intron (ENSMUSG00000029191.16, intron 4 of 4) protein_coding-intron (ENSMUSG00000029191.16, intron 23 of 24) 9063 ENSMUSG00000029191.16 ENSMUSG00000029191 ENSMUST00000203644 Rfc1 protein_coding Interval_42945 chr13 21727725 21729823 + 0 NA Intergenic Intergenic -6290 ENSMUSG00000067455.5 ENSMUSG00000067455 ENSMUST00000087714 H4c11 protein_coding Interval_89831 chr2 25812983 25813893 + 0 NA intron (ENSMUSG00000036401.5, intron 2 of 4) protein_coding-intron (ENSMUSG00000036401.5, intron 2 of 4) 2393 ENSMUSG00000036401.5 ENSMUSG00000036401 ENSMUST00000130316 Glt6d1 protein_coding Interval_9451 chr1 157281324 157281536 + 0 NA intron (ENSMUSG00000070565.11, intron 3 of 17) protein_coding-intron (ENSMUSG00000070565.11, intron 3 of 17) -50239 ENSMUSG00000070565.11 ENSMUSG00000070565 ENSMUST00000143080 Rasal2 protein_coding Interval_79956 chr18 36260972 36262170 + 0 NA Intergenic Intergenic -19526 ENSMUSG00000043991.5 ENSMUSG00000043991 ENSMUST00000051301 Pura protein_coding Interval_54320 chr14 67633419 67634354 + 0 NA Intergenic Intergenic 41220 ENSMUSG00000093726.1 ENSMUSG00000093726 ENSMUST00000175674 Gm20667 sense_overlapping Interval_149547 chr7 99482629 99484114 + 0 NA promoter-TSS (ENSMUSG00000065822.1) snoRNA-promoter-TSS (ENSMUSG00000065822.1) 265 ENSMUSG00000030744.13 ENSMUSG00000030744 ENSMUST00000128174 Rps3 protein_coding Interval_151386 chr7 122002295 122002595 + 0 NA promoter-TSS (ENSMUSG00000030872.14) protein_coding-promoter-TSS (ENSMUSG00000030872.14) 18735 ENSMUSG00000030872.14 ENSMUSG00000030872 ENSMUST00000131081 Gga2 protein_coding Interval_150686 chr7 113311574 113312232 + 0 NA intron (ENSMUSG00000055116.8, intron 18 of 19) protein_coding-intron (ENSMUSG00000055116.8, intron 18 of 19) -12355 ENSMUSG00000082183.1 ENSMUSG00000082183 ENSMUST00000118029 Gm15994 processed_pseudogene Interval_46498 chr13 66630190 66631008 + 0 NA Intergenic Intergenic -7694 ENSMUSG00000114814.1 ENSMUSG00000114814 ENSMUST00000223830 Gm48361 processed_pseudogene Interval_90659 chr2 31741700 31742372 + 0 NA intron (ENSMUSG00000026842.16, intron 2 of 11) protein_coding-intron (ENSMUSG00000026842.16, intron 1 of 10) 52918 ENSMUSG00000118600.1 ENSMUSG00000118600 ENSMUST00000239231 AL929275.1 protein_coding Interval_3837 chr1 63445452 63446655 + 0 NA promoter-TSS (ENSMUSG00000025964.15) protein_coding-promoter-TSS (ENSMUSG00000025964.15) -24566 ENSMUSG00000025964.15 ENSMUSG00000025964 ENSMUST00000141545 Adam23 protein_coding Interval_27700 chr11 69552707 69553213 + 0 NA Intergenic Intergenic 7245 ENSMUSG00000003934.5 ENSMUSG00000003934 ENSMUST00000004036 Efnb3 protein_coding Interval_126615 chr5 90950984 90951974 + 0 NA intron (ENSMUSG00000029376.8, intron 2 of 4) protein_coding-intron (ENSMUSG00000029376.8, intron 3 of 7) 20362 ENSMUSG00000029376.8 ENSMUSG00000029376 ENSMUST00000201851 Mthfd2l protein_coding Interval_170818 chr9 110959917 110961666 + 0 NA promoter-TSS (ENSMUSG00000032495.8) protein_coding-promoter-TSS (ENSMUSG00000032495.8) 6992 ENSMUSG00000032495.8 ENSMUSG00000032495 ENSMUST00000196598 Lrrc2 protein_coding Interval_143104 chr6 149364460 149365265 + 0 NA Intergenic Intergenic 3176 ENSMUSG00000081126.1 ENSMUSG00000081126 ENSMUST00000120260 Gm15784 processed_pseudogene Interval_23747 chr11 25767323 25768126 + 0 NA intron (ENSMUSG00000032985.15, intron 2 of 5) protein_coding-intron (ENSMUSG00000032985.15, intron 4 of 6) 1417 ENSMUSG00000032985.15 ENSMUSG00000032985 ENSMUST00000125987 5730522E02Rik protein_coding Interval_9640 chr1 160649891 160650621 + 0 NA promoter-TSS (ENSMUSG00000102172.1) TEC-promoter-TSS (ENSMUSG00000102172.1) 46 ENSMUSG00000102172.1 ENSMUSG00000102172 ENSMUST00000194571 Gm37873 TEC Interval_67024 chr16 40968080 40968801 + 0 NA intron (ENSMUSG00000061080.11, intron 2 of 8) protein_coding-intron (ENSMUSG00000061080.11, intron 2 of 8) 98136 ENSMUSG00000099168.1 ENSMUSG00000099168 ENSMUST00000183933 Gm27717 misc_RNA Interval_111164 chr4 13675218 13676287 + 0 NA Intergenic Intergenic -52989 ENSMUSG00000092822.2 ENSMUSG00000092822 ENSMUST00000175081 Gm23162 miRNA Interval_481 chr1 6214120 6215410 + 0 NA promoter-TSS (ENSMUSG00000090031.2) antisense-promoter-TSS (ENSMUSG00000090031.2) 528 ENSMUSG00000090031.2 ENSMUSG00000090031 ENSMUST00000097832 4732440D04Rik antisense Interval_131455 chr5 137349164 137350523 + 0 NA promoter-TSS (ENSMUSG00000029710.15) protein_coding-promoter-TSS (ENSMUSG00000029710.15) -587 ENSMUSG00000029710.15 ENSMUSG00000029710 ENSMUST00000111054 Ephb4 protein_coding Interval_121172 chr4 153764001 153764258 + 0 NA Intergenic Intergenic -112255 ENSMUSG00000077519.1 ENSMUSG00000077519 ENSMUST00000104331 Gm25880 snoRNA Interval_74674 chr17 55863629 55864407 + 0 NA TTS (ENSMUSG00000057835.7) protein_coding-TTS (ENSMUSG00000057835.7) -12889 ENSMUSG00000093740.1 ENSMUSG00000093740 ENSMUST00000176564 Gm18417 unprocessed_pseudogene Interval_31393 chr11 100408025 100408687 + 0 NA TTS (ENSMUSG00000006931.15) protein_coding-TTS (ENSMUSG00000006931.15) 3518 ENSMUSG00000006931.15 ENSMUSG00000006931 ENSMUST00000141840 P3h4 protein_coding Interval_139379 chr6 99644025 99645120 + 0 NA intron (ENSMUSG00000093661.1, intron 2 of 6) protein_coding-intron (ENSMUSG00000093661.1, intron 2 of 6) -12196 ENSMUSG00000030068.4 ENSMUSG00000030068 ENSMUST00000176255 Gm20696 protein_coding Interval_41943 chr13 4982555 4983826 + 0 NA Intergenic Intergenic -40138 ENSMUSG00000113866.1 ENSMUSG00000113866 ENSMUST00000222131 Gm47450 lincRNA Interval_16732 chr10 67720745 67720931 + 0 NA Intergenic Intergenic -2799 ENSMUSG00000112619.1 ENSMUSG00000112619 ENSMUST00000218164 1700030E10Rik lincRNA Interval_29485 chr11 84362753 84363091 + 0 NA intron (ENSMUSG00000020532.18, intron 45 of 55) protein_coding-intron (ENSMUSG00000020532.18, intron 43 of 53) 150600 ENSMUSG00000018697.14 ENSMUSG00000018697 ENSMUST00000148434 Aatf protein_coding Interval_108937 chr3 133498236 133498625 + 0 NA intron (ENSMUSG00000040943.12, intron 2 of 2) protein_coding-intron (ENSMUSG00000040943.12, intron 2 of 10) -17748 ENSMUSG00000040943.12 ENSMUSG00000040943 ENSMUST00000195913 Tet2 protein_coding Interval_11298 chr1 180806467 180806925 + 0 NA intron (ENSMUSG00000060743.12, intron 4 of 4) protein_coding-intron (ENSMUSG00000060743.12, intron 3 of 3) -7080 ENSMUSG00000073485.3 ENSMUSG00000073485 ENSMUST00000097448 H3f3aos antisense Interval_167706 chr9 72183639 72184904 + 0 NA Intergenic Intergenic -4513 ENSMUSG00000099020.1 ENSMUSG00000099020 ENSMUST00000185132 Gm27159 lincRNA Interval_4816 chr1 79694874 79695050 + 0 NA Intergenic Intergenic -22990 ENSMUSG00000054702.14 ENSMUSG00000054702 ENSMUST00000160706 Ap1s3 protein_coding Interval_88148 chr19 59747930 59748249 + 0 NA Intergenic Intergenic 57355 ENSMUSG00000118190.1 ENSMUSG00000118190 ENSMUST00000235911 Gm50411 lincRNA Interval_585 chr1 8122582 8123718 + 0 NA Intergenic Intergenic 330341 ENSMUSG00000102647.1 ENSMUSG00000102647 ENSMUST00000192338 Gm38024 TEC Interval_26638 chr11 59379585 59380064 + 0 NA TTS (ENSMUSG00000086910.1) antisense-TTS (ENSMUSG00000086910.1) -4167 ENSMUSG00000049291.6 ENSMUSG00000049291 ENSMUST00000061481 Prss38 protein_coding Interval_113296 chr4 53226204 53226642 + 0 NA Intergenic Intergenic -8862 ENSMUSG00000087192.7 ENSMUSG00000087192 ENSMUST00000139222 4930412L05Rik processed_transcript Interval_151123 chr7 118689905 118690761 + 0 NA intron (ENSMUSG00000033917.15, intron 5 of 5) protein_coding-intron (ENSMUSG00000033917.15, intron 5 of 5) 1788 ENSMUSG00000109357.1 ENSMUSG00000109357 ENSMUST00000208632 Gm45236 TEC Interval_127591 chr5 105654544 105655604 + 0 NA Intergenic Intergenic 74634 ENSMUSG00000085771.1 ENSMUSG00000085771 ENSMUST00000150195 C230066G23Rik sense_intronic Interval_32256 chr11 106542721 106544203 + 0 NA TTS (ENSMUSG00000040548.16) protein_coding-TTS (ENSMUSG00000040548.16) 23648 ENSMUSG00000040548.16 ENSMUSG00000040548 ENSMUST00000153870 Tex2 protein_coding Interval_33580 chr11 117334322 117335077 + 0 NA intron (ENSMUSG00000059248.13, intron 1 of 8) protein_coding-intron (ENSMUSG00000059248.13, intron 2 of 10) 2271 ENSMUSG00000059248.13 ENSMUSG00000059248 ENSMUST00000129387 Septin9 protein_coding Interval_107387 chr3 107188394 107189051 + 0 NA intron (ENSMUSG00000042861.7, intron 1 of 1) protein_coding-intron (ENSMUSG00000042861.7, intron 1 of 1) 5578 ENSMUSG00000042861.7 ENSMUSG00000042861 ENSMUST00000169751 Kcna10 protein_coding Interval_5187 chr1 86347200 86349948 + 0 NA exon (ENSMUSG00000026234.12, exon 14 of 14) protein_coding-exon (ENSMUSG00000026234.12, exon 14 of 14) 2727 ENSMUSG00000064837.1 ENSMUSG00000064837 ENSMUST00000082903 Snora75 snoRNA Interval_87105 chr19 46135229 46137830 + 0 NA TTS (ENSMUSG00000025229.15) protein_coding-TTS (ENSMUSG00000025229.15) 760 ENSMUSG00000025229.15 ENSMUSG00000025229 ENSMUST00000172971 Pitx3 protein_coding Interval_121916 chr5 9569709 9570780 + 0 NA exon (ENSMUSG00000003974.6, exon 3 of 6) protein_coding-exon (ENSMUSG00000003974.6, exon 3 of 6) 32363 ENSMUSG00000106637.1 ENSMUSG00000106637 ENSMUST00000199761 Gm42455 TEC Interval_21226 chr10 127310872 127312851 + 0 NA promoter-TSS (ENSMUSG00000040354.14) protein_coding-promoter-TSS (ENSMUSG00000040354.14) -75 ENSMUSG00000040354.14 ENSMUSG00000040354 ENSMUST00000128369 Mars1 protein_coding Interval_18256 chr10 84371697 84372644 + 0 NA exon (ENSMUSG00000020032.14, exon 7 of 7) protein_coding-exon (ENSMUSG00000020032.14, exon 7 of 7) 20218 ENSMUSG00000020032.14 ENSMUSG00000020032 ENSMUST00000129355 Nuak1 protein_coding Interval_7507 chr1 131903319 131903780 + 0 NA Intergenic Intergenic -3616 ENSMUSG00000100026.1 ENSMUSG00000100026 ENSMUST00000187256 Gm29105 unprocessed_pseudogene Interval_133724 chr6 9897366 9897940 + 0 NA Intergenic Intergenic 275201 ENSMUSG00000107459.1 ENSMUSG00000107459 ENSMUST00000203122 Gm5110 processed_pseudogene Interval_169030 chr9 90491671 90492035 + 0 NA Intergenic Intergenic 139858 ENSMUSG00000065881.1 ENSMUSG00000065881 ENSMUST00000083947 Gm22866 snRNA Interval_62385 chr15 91477904 91478270 + 0 NA intron (ENSMUSG00000036298.10, intron 3 of 9) protein_coding-intron (ENSMUSG00000036298.10, intron 3 of 9) 54279 ENSMUSG00000084240.1 ENSMUSG00000084240 ENSMUST00000121889 Gm15383 processed_pseudogene Interval_79795 chr18 35148044 35148384 + 0 NA intron (ENSMUSG00000037815.7, intron 2 of 9) protein_coding-intron (ENSMUSG00000037815.7, intron 1 of 17) -60591 ENSMUSG00000117727.1 ENSMUSG00000117727 ENSMUST00000238134 Gm3587 lincRNA Interval_27027 chr11 62448909 62449354 + 0 NA intron (ENSMUSG00000018501.17, intron 1 of 4) protein_coding-intron (ENSMUSG00000018501.17, intron 1 of 45) -9477 ENSMUSG00000014245.8 ENSMUSG00000014245 ENSMUST00000147918 Pigl protein_coding Interval_119546 chr4 138304116 138305156 + 0 NA promoter-TSS (ENSMUSG00000028757.4) protein_coding-promoter-TSS (ENSMUSG00000028757.4) -94 ENSMUSG00000028757.4 ENSMUSG00000028757 ENSMUST00000030538 Ddost protein_coding Interval_16243 chr10 61665722 61666051 + 0 NA TTS (ENSMUSG00000020089.8) protein_coding-TTS (ENSMUSG00000020089.8) 2197 ENSMUSG00000020089.8 ENSMUSG00000020089 ENSMUST00000162028 Ppa1 protein_coding Interval_20653 chr10 120048586 120048807 + 0 NA intron (ENSMUSG00000034813.18, intron 9 of 14) protein_coding-intron (ENSMUSG00000034813.18, intron 18 of 22) 64169 ENSMUSG00000020228.11 ENSMUSG00000020228 ENSMUST00000154501 Helb protein_coding Interval_12158 chr1 190219997 190220341 + 0 NA Intergenic Intergenic -49489 ENSMUSG00000010175.13 ENSMUSG00000010175 ENSMUST00000177288 Prox1 protein_coding Interval_44815 chr13 48856415 48858315 + 0 NA intron (ENSMUSG00000038025.8, intron 1 of 21) protein_coding-intron (ENSMUSG00000038025.8, intron 1 of 21) -13747 ENSMUSG00000086889.1 ENSMUSG00000086889 ENSMUST00000123212 Phf2os1 antisense Interval_154465 chr8 18395726 18396692 + 0 NA Intergenic Intergenic -61871 ENSMUSG00000110056.1 ENSMUSG00000110056 ENSMUST00000211704 1700014L14Rik lincRNA Interval_70272 chr17 7875821 7876457 + 0 NA Intergenic Intergenic -48837 ENSMUSG00000071984.11 ENSMUSG00000071984 ENSMUST00000167580 Fndc1 protein_coding Interval_40365 chr12 104423002 104423643 + 0 NA Intergenic Intergenic -3922 ENSMUSG00000077398.1 ENSMUSG00000077398 ENSMUST00000104210 Gm24334 snoRNA Interval_32533 chr11 108208125 108208440 + 0 NA intron (ENSMUSG00000050965.14, intron 2 of 2) protein_coding-intron (ENSMUSG00000050965.14, intron 2 of 16) 26432 ENSMUSG00000084978.1 ENSMUSG00000084978 ENSMUST00000153899 Gm11655 antisense Interval_58846 chr15 38560355 38560987 + 0 NA intron (ENSMUSG00000102106.2, intron 2 of 2) lincRNA-intron (ENSMUSG00000102106.2, intron 2 of 2) -13325 ENSMUSG00000115587.1 ENSMUSG00000115587 ENSMUST00000226494 Gm29697 processed_pseudogene Interval_8345 chr1 137586856 137588263 + 0 NA Intergenic Intergenic -56329 ENSMUSG00000103070.1 ENSMUSG00000103070 ENSMUST00000192122 Gm37903 TEC Interval_76730 chr17 83727430 83729535 + 0 NA promoter-TSS (ENSMUSG00000055817.18) protein_coding-promoter-TSS (ENSMUSG00000055817.18) -682 ENSMUSG00000055817.18 ENSMUSG00000055817 ENSMUST00000175920 Mta3 protein_coding Interval_147285 chr7 65485754 65486917 + 0 NA intron (ENSMUSG00000030516.14, intron 2 of 4) protein_coding-intron (ENSMUSG00000030516.14, intron 2 of 4) -5114 ENSMUSG00000108533.1 ENSMUSG00000108533 ENSMUST00000207008 Gm44792 TEC Interval_99319 chr2 158912496 158913406 + 0 NA Intergenic Intergenic 85533 ENSMUSG00000027655.14 ENSMUSG00000027655 ENSMUST00000143195 Dhx35 protein_coding Interval_123336 chr5 31551365 31551593 + 0 NA intron (ENSMUSG00000029141.16, intron 13 of 13) protein_coding-intron (ENSMUSG00000029141.16, intron 12 of 12) 17593 ENSMUSG00000107352.1 ENSMUSG00000107352 ENSMUST00000200956 Gm43660 lincRNA Interval_155609 chr8 35123149 35124132 + 0 NA Intergenic Intergenic 9892 ENSMUSG00000097106.1 ENSMUSG00000097106 ENSMUST00000180440 Rpl31-ps23 processed_pseudogene Interval_55552 chr14 91730597 91731440 + 0 NA TTS (ENSMUSG00000115171.1) unprocessed_pseudogene-TTS (ENSMUSG00000115171.1) 54570 ENSMUSG00000115171.1 ENSMUSG00000115171 ENSMUST00000227750 Gm48943 unprocessed_pseudogene Interval_86133 chr19 36939953 36940269 + 0 NA intron (ENSMUSG00000040565.8, intron 1 of 37) protein_coding-intron (ENSMUSG00000040565.8, intron 1 of 37) -20074 ENSMUSG00000040565.8 ENSMUSG00000040565 ENSMUST00000236343 Btaf1 protein_coding Interval_52937 chr14 52131359 52132516 + 0 NA intron (ENSMUSG00000057132.16, intron 9 of 25) protein_coding-intron (ENSMUSG00000057132.16, intron 9 of 24) -17670 ENSMUSG00000057132.16 ENSMUSG00000057132 ENSMUST00000181736 Rpgrip1 protein_coding Interval_136436 chr6 54435432 54436622 + 0 NA intron (ENSMUSG00000086040.8, intron 1 of 8) protein_coding-intron (ENSMUSG00000086040.8, intron 1 of 7) -16856 ENSMUSG00000086040.8 ENSMUSG00000086040 ENSMUST00000131043 Wipf3 protein_coding Interval_167180 chr9 65953277 65953701 + 0 NA intron (ENSMUSG00000032384.16, intron 3 of 7) protein_coding-intron (ENSMUSG00000032384.16, intron 2 of 13) -1044 ENSMUSG00000077385.1 ENSMUSG00000077385 ENSMUST00000104197 Gm22657 snoRNA Interval_22686 chr11 12995479 12995749 + 0 NA Intergenic Intergenic -2052 ENSMUSG00000084055.1 ENSMUSG00000084055 ENSMUST00000117869 Gm12004 processed_pseudogene Interval_26490 chr11 58134830 58135239 + 0 NA intron (ENSMUSG00000037275.14, intron 20 of 27) protein_coding-intron (ENSMUSG00000037275.14, intron 20 of 27) 8966 ENSMUSG00000087629.1 ENSMUSG00000087629 ENSMUST00000129126 Gm12246 antisense Interval_68982 chr16 89920480 89920847 + 0 NA intron (ENSMUSG00000002489.16, intron 2 of 27) protein_coding-intron (ENSMUSG00000002489.16, intron 2 of 27) -125381 ENSMUSG00000002489.16 ENSMUSG00000002489 ENSMUST00000136760 Tiam1 protein_coding Interval_92253 chr2 57333187 57333876 + 0 NA intron (ENSMUSG00000026827.12, intron 6 of 16) protein_coding-intron (ENSMUSG00000026827.12, intron 6 of 16) -57845 ENSMUSG00000084292.1 ENSMUSG00000084292 ENSMUST00000118714 Gm13535 processed_pseudogene Interval_139312 chr6 98525466 98527852 + 0 NA intron (ENSMUSG00000107614.1, intron 2 of 4) lincRNA-intron (ENSMUSG00000107614.1, intron 2 of 4) 25448 ENSMUSG00000107929.1 ENSMUSG00000107929 ENSMUST00000204069 4930595L18Rik lincRNA Interval_173064 chrX 70184490 70184907 + 0 NA Intergenic Intergenic -41110 ENSMUSG00000100511.1 ENSMUSG00000100511 ENSMUST00000188663 1700111N16Rik antisense Interval_155946 chr8 41217410 41218705 + 0 NA promoter-TSS (ENSMUSG00000085445.1) processed_transcript-promoter-TSS (ENSMUSG00000085445.1) -82 ENSMUSG00000085445.1 ENSMUSG00000085445 ENSMUST00000142897 Gm16348 processed_transcript Interval_91253 chr2 36595620 36596256 + 0 NA Intergenic Intergenic 29276 ENSMUSG00000096822.2 ENSMUSG00000096822 ENSMUST00000075474 Olfr344 protein_coding Interval_29914 chr11 87719120 87719576 + 0 NA TTS (ENSMUSG00000034177.15) protein_coding-TTS (ENSMUSG00000034177.15) 17225 ENSMUSG00000085972.1 ENSMUSG00000085972 ENSMUST00000142895 1110028F11Rik sense_intronic Interval_95086 chr2 103776104 103776449 + 0 NA promoter-TSS (ENSMUSG00000027184.14) protein_coding-promoter-TSS (ENSMUSG00000027184.14) -15081 ENSMUSG00000027185.15 ENSMUSG00000027185 ENSMUST00000148798 Nat10 protein_coding Interval_4721 chr1 77708437 77708770 + 0 NA Intergenic Intergenic 137931 ENSMUSG00000101506.1 ENSMUSG00000101506 ENSMUST00000185671 Gm28385 processed_pseudogene Interval_30301 chr11 93243677 93243951 + 0 NA intron (ENSMUSG00000056158.14, intron 2 of 8) protein_coding-intron (ENSMUSG00000056158.14, intron 3 of 9) 145786 ENSMUSG00000056158.14 ENSMUSG00000056158 ENSMUST00000107863 Car10 protein_coding Interval_57521 chr15 12047740 12048130 + 0 NA Intergenic Intergenic -16008 ENSMUSG00000107344.1 ENSMUSG00000107344 ENSMUST00000201323 Gm2559 processed_pseudogene Interval_62355 chr15 90972080 90972690 + 0 NA intron (ENSMUSG00000022629.17, intron 12 of 32) protein_coding-intron (ENSMUSG00000022629.17, intron 12 of 35) 14389 ENSMUSG00000116113.1 ENSMUSG00000116113 ENSMUST00000229864 Gm49545 processed_pseudogene Interval_84868 chr19 18335940 18336235 + 0 NA Intergenic Intergenic -130292 ENSMUSG00000117774.1 ENSMUSG00000117774 ENSMUST00000237977 Gm18610 processed_pseudogene Interval_42895 chr13 21199836 21200924 + 0 NA Intergenic Intergenic -12824 ENSMUSG00000113104.1 ENSMUSG00000113104 ENSMUST00000220690 Gm47806 antisense Interval_130021 chr5 123731875 123732465 + 0 NA intron (ENSMUSG00000029422.15, intron 9 of 10) protein_coding-intron (ENSMUSG00000029422.15, intron 9 of 11) -11396 ENSMUSG00000029427.11 ENSMUSG00000029427 ENSMUST00000200503 Zcchc8 protein_coding Interval_15153 chr10 42934900 42935279 + 0 NA TTS (ENSMUSG00000044770.14) protein_coding-TTS (ENSMUSG00000044770.14) -46292 ENSMUSG00000111086.1 ENSMUSG00000111086 ENSMUST00000214070 Gm48671 lincRNA Interval_18021 chr10 81401048 81403185 + 0 NA intron (ENSMUSG00000055053.18, intron 2 of 2) protein_coding-intron (ENSMUSG00000055053.18, intron 9 of 9) -7459 ENSMUSG00000085327.1 ENSMUSG00000085327 ENSMUST00000156260 Gm16104 antisense Interval_167639 chr9 71465938 71466719 + 0 NA Intergenic Intergenic 19577 ENSMUSG00000032199.13 ENSMUSG00000032199 ENSMUST00000233263 Polr2m protein_coding Interval_55271 chr14 79877098 79878102 + 0 NA intron (ENSMUSG00000097927.2, intron 1 of 4) lincRNA-intron (ENSMUSG00000097927.2, intron 1 of 4) -8424 ENSMUSG00000095959.2 ENSMUSG00000095959 ENSMUST00000179430 Gm10845 lincRNA Interval_84196 chr19 8695038 8695823 + 0 NA Intergenic Intergenic -13267 ENSMUSG00000087830.1 ENSMUSG00000087830 ENSMUST00000157205 Gm22820 misc_RNA Interval_83248 chr18 82986571 82987429 + 0 NA promoter-TSS (ENSMUSG00000058881.13) protein_coding-promoter-TSS (ENSMUSG00000058881.13) -24903 ENSMUSG00000118094.1 ENSMUSG00000118094 ENSMUST00000236941 AC142100.1 processed_transcript Interval_24228 chr11 31657096 31657815 + 0 NA Intergenic Intergenic 14272 ENSMUSG00000044502.16 ENSMUSG00000044502 ENSMUST00000109415 Bod1 protein_coding Interval_14389 chr10 32498908 32499252 + 0 NA intron (ENSMUSG00000069670.8, intron 1 of 3) protein_coding-intron (ENSMUSG00000069670.8, intron 1 of 6) -12081 ENSMUSG00000112075.1 ENSMUSG00000112075 ENSMUST00000219777 Gm47700 TEC Interval_60885 chr15 77484804 77485688 + 0 NA intron (ENSMUSG00000050982.13, intron 3 of 3) protein_coding-intron (ENSMUSG00000050982.13, intron 3 of 3) 8199 ENSMUSG00000050982.13 ENSMUSG00000050982 ENSMUST00000060551 Apol10a protein_coding Interval_52293 chr14 43992940 43993289 + 0 NA TTS (ENSMUSG00000090109.1) unprocessed_pseudogene-TTS (ENSMUSG00000090109.1) 1400 ENSMUSG00000090109.1 ENSMUSG00000090109 ENSMUST00000161871 Ear-ps10 unprocessed_pseudogene Interval_79253 chr18 27725907 27726982 + 0 NA Intergenic Intergenic -19877 ENSMUSG00000117529.1 ENSMUSG00000117529 ENSMUST00000234608 Gm49978 lincRNA Interval_155568 chr8 34640320 34640504 + 0 NA promoter-TSS (ENSMUSG00000109819.1) lincRNA-promoter-TSS (ENSMUSG00000109819.1) -96 ENSMUSG00000109819.1 ENSMUSG00000109819 ENSMUST00000211381 B930018H19Rik lincRNA Interval_147848 chr7 74182108 74183043 + 0 NA Intergenic Intergenic -52983 ENSMUSG00000098303.1 ENSMUSG00000098303 ENSMUST00000184860 Gm27459 miRNA Interval_139437 chr6 100180441 100181647 + 0 NA Intergenic Intergenic -37230 ENSMUSG00000107558.1 ENSMUSG00000107558 ENSMUST00000204605 2010109P13Rik TEC Interval_152421 chr7 132958460 132958859 + 0 NA intron (ENSMUSG00000030967.15, intron 2 of 9) protein_coding-intron (ENSMUSG00000030967.15, intron 1 of 8) 10491 ENSMUSG00000030967.15 ENSMUSG00000030967 ENSMUST00000153335 Zranb1 protein_coding Interval_24506 chr11 33829054 33830012 + 0 NA intron (ENSMUSG00000053519.17, intron 1 of 8) protein_coding-intron (ENSMUSG00000053519.17, intron 1 of 7) 123983 ENSMUSG00000087328.1 ENSMUSG00000087328 ENSMUST00000125068 Gm12120 antisense Interval_25909 chr11 52479918 52481341 + 0 NA Intergenic Intergenic -1526 ENSMUSG00000081297.1 ENSMUSG00000081297 ENSMUST00000120089 Gm12209 processed_pseudogene Interval_133815 chr6 12646278 12646949 + 0 NA intron (ENSMUSG00000107422.1, intron 3 of 3) protein_coding-intron (ENSMUSG00000032625.14, intron 1 of 27) 37617 ENSMUSG00000107422.1 ENSMUSG00000107422 ENSMUST00000203511 Gm44129 lincRNA Interval_97994 chr2 146502824 146504234 + 0 NA intron (ENSMUSG00000037110.20, intron 1 of 41) protein_coding-intron (ENSMUSG00000037110.20, intron 1 of 15) 8815 ENSMUSG00000037110.20 ENSMUSG00000037110 ENSMUST00000124709 Ralgapa2 protein_coding Interval_152006 chr7 128167154 128167740 + 0 NA intron (ENSMUSG00000070369.13, intron 2 of 30) protein_coding-intron (ENSMUSG00000070369.13, intron 2 of 30) 13428 ENSMUSG00000108729.1 ENSMUSG00000108729 ENSMUST00000205579 Gm17831 processed_pseudogene Interval_155808 chr8 39011778 39012339 + 0 NA intron (ENSMUSG00000039530.17, intron 1 of 7) protein_coding-intron (ENSMUSG00000039530.17, intron 1 of 9) 6150 ENSMUSG00000039530.17 ENSMUSG00000039530 ENSMUST00000210890 Tusc3 protein_coding Interval_33464 chr11 116682477 116683440 + 0 NA intron (ENSMUSG00000057286.6, intron 1 of 1) protein_coding-intron (ENSMUSG00000057286.6, intron 5 of 8) -1668 ENSMUSG00000110170.1 ENSMUSG00000110170 ENSMUST00000144398 St6galnac2 protein_coding Interval_141979 chr6 136305680 136306130 + 0 NA Intergenic Intergenic -22625 ENSMUSG00000094973.2 ENSMUSG00000094973 ENSMUST00000077886 Eif4a3l1 protein_coding Interval_150092 chr7 105772742 105773036 + 0 NA exon (ENSMUSG00000036862.15, exon 2 of 21) protein_coding-exon (ENSMUSG00000036862.15, exon 2 of 21) 14663 ENSMUSG00000036862.15 ENSMUSG00000036862 ENSMUST00000154659 Dchs1 protein_coding Interval_28000 chr11 72094613 72095286 + 0 NA intron (ENSMUSG00000040543.16, intron 3 of 7) protein_coding-intron (ENSMUSG00000040543.16, intron 3 of 19) 40829 ENSMUSG00000040543.16 ENSMUSG00000040543 ENSMUST00000142471 Pitpnm3 protein_coding Interval_150028 chr7 105148562 105148831 + 0 NA Intergenic Intergenic -1684 ENSMUSG00000044120.5 ENSMUSG00000044120 ENSMUST00000061284 Olfr683 protein_coding Interval_30988 chr11 97602323 97602906 + 0 NA intron (ENSMUSG00000085860.1, intron 1 of 3) processed_transcript-intron (ENSMUSG00000085860.1, intron 1 of 3) -12368 ENSMUSG00000085860.1 ENSMUSG00000085860 ENSMUST00000145262 2410003L11Rik processed_transcript Interval_172010 chr9 123486589 123486868 + 0 NA intron (ENSMUSG00000025239.3, intron 1 of 3) protein_coding-intron (ENSMUSG00000025239.3, intron 1 of 7) 6118 ENSMUSG00000025239.3 ENSMUSG00000025239 ENSMUST00000214309 Limd1 protein_coding Interval_44668 chr13 47028234 47028538 + 0 NA TTS (ENSMUSG00000021376.11) protein_coding-TTS (ENSMUSG00000021376.11) 546 ENSMUSG00000021376.11 ENSMUSG00000021376 ENSMUST00000124948 Tpmt protein_coding Interval_123317 chr5 31357768 31358204 + 0 NA Intergenic Intergenic -1191 ENSMUSG00000106935.1 ENSMUSG00000106935 ENSMUST00000200995 Gm19457 processed_pseudogene Interval_57596 chr15 12689660 12690354 + 0 NA intron (ENSMUSG00000022197.16, intron 2 of 4) protein_coding-intron (ENSMUSG00000022197.16, intron 2 of 4) -5117 ENSMUSG00000095842.1 ENSMUSG00000095842 ENSMUST00000178350 Gm24302 miRNA Interval_144325 chr7 24483048 24483939 + 0 NA intron (ENSMUSG00000054793.8, intron 1 of 8) protein_coding-intron (ENSMUSG00000054793.8, intron 1 of 8) -16468 ENSMUSG00000054793.8 ENSMUSG00000054793 ENSMUST00000205820 Cadm4 protein_coding Interval_172225 chrX 10650570 10651071 + 0 NA Intergenic Intergenic -9702 ENSMUSG00000068200.6 ENSMUSG00000068200 ENSMUST00000121308 Gm5931 processed_pseudogene Interval_15401 chr10 45477764 45478184 + 0 NA intron (ENSMUSG00000063804.8, intron 1 of 3) protein_coding-intron (ENSMUSG00000063804.8, intron 1 of 3) 8421 ENSMUSG00000063804.8 ENSMUSG00000063804 ENSMUST00000214555 Lin28b protein_coding Interval_107739 chr3 112431962 112432440 + 0 NA Intergenic Intergenic -100429 ENSMUSG00000105073.1 ENSMUSG00000105073 ENSMUST00000197055 Gm9317 processed_pseudogene Interval_1846 chr1 34111047 34111323 + 0 NA intron (ENSMUSG00000026131.20, intron 1 of 3) protein_coding-intron (ENSMUSG00000026131.20, intron 2 of 97) -6174 ENSMUSG00000105982.1 ENSMUSG00000105982 ENSMUST00000198033 Mir6896 miRNA Interval_38752 chr12 81917664 81919401 + 0 NA promoter-TSS (ENSMUSG00000021140.9) protein_coding-promoter-TSS (ENSMUSG00000021140.9) -54655 ENSMUSG00000021140.9 ENSMUSG00000021140 ENSMUST00000222468 Pcnx protein_coding Interval_102207 chr3 19458790 19459146 + 0 NA Intergenic Intergenic -72279 ENSMUSG00000027606.12 ENSMUSG00000027606 ENSMUST00000165693 Dnajc5b protein_coding Interval_147256 chr7 65184335 65184700 + 0 NA Intergenic Intergenic -10326 ENSMUSG00000108445.1 ENSMUSG00000108445 ENSMUST00000205315 Gm17918 processed_pseudogene Interval_31088 chr11 98057275 98058735 + 0 NA Intergenic Intergenic -5883 ENSMUSG00000084079.1 ENSMUSG00000084079 ENSMUST00000119220 Gm11631 processed_pseudogene Interval_21067 chr10 125844982 125845709 + 0 NA Intergenic Intergenic -120889 ENSMUSG00000020105.9 ENSMUSG00000020105 ENSMUST00000219974 Lrig3 protein_coding Interval_22975 chr11 18275088 18276296 + 0 NA Intergenic Intergenic 51979 ENSMUSG00000081302.1 ENSMUSG00000081302 ENSMUST00000119030 Gm12020 processed_pseudogene Interval_89374 chr2 20135035 20135510 + 0 NA intron (ENSMUSG00000036617.17, intron 2 of 7) protein_coding-intron (ENSMUSG00000036617.17, intron 2 of 7) -97378 ENSMUSG00000082164.1 ENSMUSG00000082164 ENSMUST00000121607 Gm13360 processed_pseudogene Interval_33376 chr11 116198391 116199504 + 0 NA promoter-TSS (ENSMUSG00000020778.12) protein_coding-promoter-TSS (ENSMUSG00000020778.12) -12 ENSMUSG00000020778.12 ENSMUSG00000020778 ENSMUST00000135460 Ten1 protein_coding Interval_44938 chr13 50355186 50355825 + 0 NA intron (ENSMUSG00000101136.1, intron 1 of 1) antisense-intron (ENSMUSG00000101136.1, intron 1 of 1) -75616 ENSMUSG00000037816.10 ENSMUSG00000037816 ENSMUST00000176543 Fbxw17 protein_coding Interval_128661 chr5 114577809 114578289 + 0 NA intron (ENSMUSG00000041930.7, intron 1 of 1) protein_coding-intron (ENSMUSG00000041930.7, intron 1 of 2) 10032 ENSMUSG00000041930.7 ENSMUSG00000041930 ENSMUST00000130983 Fam222a protein_coding Interval_166801 chr9 62792349 62792586 + 0 NA exon (ENSMUSG00000032244.9, exon 2 of 2) protein_coding-exon (ENSMUSG00000032244.9, exon 2 of 2) 2563 ENSMUSG00000111537.1 ENSMUSG00000111537 ENSMUST00000214567 Gm7653 processed_pseudogene Interval_125453 chr5 67266280 67266595 + 0 NA intron (ENSMUSG00000037720.16, intron 3 of 4) protein_coding-intron (ENSMUSG00000037720.16, intron 4 of 7) -5175 ENSMUSG00000107319.1 ENSMUSG00000107319 ENSMUST00000201816 Gm42670 antisense Interval_157937 chr8 76781072 76781394 + 0 NA intron (ENSMUSG00000074235.4, intron 1 of 1) bidirectional_promoter_lncRNA-intron (ENSMUSG00000074235.4, intron 1 of 1) 81815 ENSMUSG00000087321.1 ENSMUSG00000087321 ENSMUST00000139800 Gm5353 processed_pseudogene Interval_77463 chr17 89159500 89159818 + 0 NA intron (ENSMUSG00000032937.5, intron 1 of 9) protein_coding-intron (ENSMUSG00000032937.5, intron 1 of 9) 41016 ENSMUSG00000032937.5 ENSMUSG00000032937 ENSMUST00000035701 Fshr protein_coding Interval_50033 chr13 119861627 119862234 + 0 NA Intergenic Intergenic 11145 ENSMUSG00000103877.2 ENSMUSG00000103877 ENSMUST00000191645 Gm21358 processed_pseudogene Interval_41686 chr12 117740526 117741613 + 0 NA exon (ENSMUSG00000041992.9, exon 1 of 1) protein_coding-exon (ENSMUSG00000041992.9, exon 1 of 1) 17097 ENSMUSG00000113840.1 ENSMUSG00000113840 ENSMUST00000223173 Gm18955 processed_pseudogene Interval_160602 chr8 110956832 110958709 + 0 NA TTS (ENSMUSG00000031749.12) protein_coding-TTS (ENSMUSG00000031749.12) -6299 ENSMUSG00000118587.1 ENSMUSG00000118587 ENSMUST00000239383 AC132945.1 unprocessed_pseudogene Interval_107182 chr3 104399876 104400192 + 0 NA intron (ENSMUSG00000032913.13, intron 1 of 1) protein_coding-intron (ENSMUSG00000032913.13, intron 1 of 1) -9127 ENSMUSG00000104768.1 ENSMUSG00000104768 ENSMUST00000199205 Gm38412 antisense Interval_5113 chr1 85758132 85759060 + 0 NA intron (ENSMUSG00000052760.16, intron 3 of 7) protein_coding-intron (ENSMUSG00000052760.16, intron 3 of 7) -5198 ENSMUSG00000094834.1 ENSMUSG00000094834 ENSMUST00000175454 Gm25472 miRNA Interval_143178 chr7 4213033 4214434 + 0 NA Intergenic Intergenic 5901 ENSMUSG00000083309.1 ENSMUSG00000083309 ENSMUST00000120492 Gm15926 unprocessed_pseudogene Interval_67641 chr16 55103037 55103251 + 0 NA Intergenic Intergenic 130713 ENSMUSG00000064549.1 ENSMUSG00000064549 ENSMUST00000082615 Gm22977 snRNA Interval_157791 chr8 73260817 73261169 + 0 NA intron (ENSMUSG00000004383.18, intron 1 of 14) protein_coding-intron (ENSMUSG00000004383.18, intron 1 of 14) -85735 ENSMUSG00000089447.1 ENSMUSG00000089447 ENSMUST00000158822 Gm22532 snoRNA Interval_51266 chr14 25630895 25631783 + 0 NA intron (ENSMUSG00000007817.15, intron 1 of 4) protein_coding-intron (ENSMUSG00000007817.15, intron 6 of 23) -62855 ENSMUSG00000021868.7 ENSMUSG00000021868 ENSMUST00000223872 Ppif protein_coding Interval_161187 chr8 118334958 118335452 + 0 NA intron (ENSMUSG00000031841.19, intron 2 of 8) protein_coding-intron (ENSMUSG00000031841.19, intron 1 of 13) 46986 ENSMUSG00000110662.1 ENSMUSG00000110662 ENSMUST00000213075 Gm45722 processed_pseudogene Interval_67459 chr16 48999251 48999657 + 0 NA intron (ENSMUSG00000033031.13, intron 2 of 3) protein_coding-intron (ENSMUSG00000033031.13, intron 3 of 20) -16383 ENSMUSG00000033031.13 ENSMUSG00000033031 ENSMUST00000149004 Cip2a protein_coding Interval_126125 chr5 77793916 77794136 + 0 NA Intergenic Intergenic 106650 ENSMUSG00000106996.1 ENSMUSG00000106996 ENSMUST00000201516 Gm31049 unprocessed_pseudogene Interval_128624 chr5 114362713 114363752 + 0 NA promoter-TSS (ENSMUSG00000066952.11) protein_coding-promoter-TSS (ENSMUSG00000066952.11) 6975 ENSMUSG00000001098.15 ENSMUSG00000001098 ENSMUST00000123538 Kctd10 protein_coding Interval_150210 chr7 108080958 108081193 + 0 NA promoter-TSS (ENSMUSG00000109670.1) unprocessed_pseudogene-promoter-TSS (ENSMUSG00000109670.1) -789 ENSMUSG00000109670.1 ENSMUSG00000109670 ENSMUST00000210338 Gm45375 unprocessed_pseudogene Interval_99047 chr2 156841777 156842754 + 0 NA intron (ENSMUSG00000062175.13, intron 1 of 3) protein_coding-intron (ENSMUSG00000062175.13, intron 1 of 3) -2373 ENSMUSG00000087179.8 ENSMUSG00000087179 ENSMUST00000134838 Gm14230 lincRNA Interval_47852 chr13 93793472 93793927 + 0 NA intron (ENSMUSG00000042082.7, intron 2 of 5) protein_coding-intron (ENSMUSG00000042082.7, intron 2 of 7) 2922 ENSMUSG00000093480.1 ENSMUSG00000093480 ENSMUST00000176635 Mir5624 miRNA Interval_58813 chr15 38246698 38248264 + 0 NA intron (ENSMUSG00000115307.1, intron 2 of 2) lincRNA-intron (ENSMUSG00000115307.1, intron 2 of 2) -3233 ENSMUSG00000115057.1 ENSMUSG00000115057 ENSMUST00000228373 Gm8705 processed_pseudogene Interval_150934 chr7 116455207 116456040 + 0 NA Intergenic Intergenic 12048 ENSMUSG00000108461.1 ENSMUSG00000108461 ENSMUST00000206201 AV356131 bidirectional_promoter_lncRNA Interval_18628 chr10 88671929 88673407 + 0 NA promoter-TSS (ENSMUSG00000112885.1) processed_pseudogene-promoter-TSS (ENSMUSG00000112885.1) -351 ENSMUSG00000112885.1 ENSMUSG00000112885 ENSMUST00000220161 Gm29807 processed_pseudogene Interval_40688 chr12 107303398 107303813 + 0 NA Intergenic Intergenic -97539 ENSMUSG00000082362.1 ENSMUSG00000082362 ENSMUST00000117317 Gm5187 processed_pseudogene Interval_22845 chr11 16590444 16593215 + 0 NA Intergenic Intergenic 44237 ENSMUSG00000101316.1 ENSMUSG00000101316 ENSMUST00000118481 Gm12663 processed_pseudogene Interval_91951 chr2 51995905 51996140 + 0 NA Intergenic Intergenic -22528 ENSMUSG00000026946.9 ENSMUSG00000026946 ENSMUST00000123521 Nmi protein_coding Interval_119244 chr4 136424239 136425910 + 0 NA intron (ENSMUSG00000070687.11, intron 1 of 1) protein_coding-intron (ENSMUSG00000070687.11, intron 1 of 1) 462 ENSMUSG00000070687.11 ENSMUSG00000070687 ENSMUST00000133818 Htr1d protein_coding Interval_73810 chr17 43981805 43982044 + 0 NA intron (ENSMUSG00000039601.16, intron 1 of 2) protein_coding-intron (ENSMUSG00000039601.16, intron 1 of 3) -20083 ENSMUSG00000088576.1 ENSMUSG00000088576 ENSMUST00000157951 Gm24532 misc_RNA Interval_156187 chr8 45795028 45795380 + 0 NA TTS (ENSMUSG00000031626.18) protein_coding-TTS (ENSMUSG00000031626.18) -10449 ENSMUSG00000031626.18 ENSMUSG00000031626 ENSMUST00000156549 Sorbs2 protein_coding Interval_174624 chrX 160245883 160246118 + 0 NA Intergenic Intergenic 23963 ENSMUSG00000082500.1 ENSMUSG00000082500 ENSMUST00000118775 Gm15195 processed_pseudogene Interval_108568 chr3 129194702 129195130 + 0 NA Intergenic Intergenic -15090 ENSMUSG00000098515.1 ENSMUSG00000098515 ENSMUST00000184283 Gm27195 sense_intronic Interval_120902 chr4 151434408 151435047 + 0 NA intron (ENSMUSG00000014592.21, intron 5 of 24) protein_coding-intron (ENSMUSG00000014592.21, intron 5 of 23) 58257 ENSMUSG00000085593.1 ENSMUSG00000085593 ENSMUST00000129097 4930589P08Rik antisense Interval_81701 chr18 63691755 63692922 + 0 NA promoter-TSS (ENSMUSG00000024583.3) protein_coding-promoter-TSS (ENSMUSG00000024583.3) 16456 ENSMUSG00000024583.3 ENSMUSG00000024583 ENSMUST00000236253 Txnl1 protein_coding Interval_150604 chr7 112753164 112753688 + 0 NA intron (ENSMUSG00000055320.18, intron 1 of 13) protein_coding-intron (ENSMUSG00000055320.18, intron 1 of 13) 39475 ENSMUSG00000106046.1 ENSMUSG00000106046 ENSMUST00000199696 Gm44462 miRNA Interval_145770 chr7 38182655 38184391 + 0 NA promoter-TSS (ENSMUSG00000054676.15) protein_coding-promoter-TSS (ENSMUSG00000054676.15) -375 ENSMUSG00000054676.15 ENSMUSG00000054676 ENSMUST00000179503 1600014C10Rik protein_coding Interval_14690 chr10 39056968 39057154 + 0 NA exon (ENSMUSG00000019846.11, exon 2 of 2) protein_coding-exon (ENSMUSG00000019846.11, exon 2 of 2) -48720 ENSMUSG00000019846.11 ENSMUSG00000019846 ENSMUST00000163036 Lama4 protein_coding Interval_54589 chr14 70865631 70866006 + 0 NA intron (ENSMUSG00000099528.1, intron 2 of 3) lincRNA-intron (ENSMUSG00000099528.1, intron 2 of 3) 12885 ENSMUSG00000099528.1 ENSMUSG00000099528 ENSMUST00000190896 2410012E07Rik lincRNA Interval_10689 chr1 172902572 172902771 + 0 NA Intergenic Intergenic -7630 ENSMUSG00000026542.6 ENSMUSG00000026542 ENSMUST00000027824 Apcs protein_coding Interval_40133 chr12 101861342 101863351 + 0 NA intron (ENSMUSG00000021188.14, intron 10 of 14) protein_coding-intron (ENSMUSG00000021188.14, intron 16 of 20) -4603 ENSMUSG00000093758.1 ENSMUSG00000093758 ENSMUST00000176082 Gm20701 processed_pseudogene Interval_113920 chr4 59854114 59854461 + 0 NA intron (ENSMUSG00000028385.14, intron 1 of 8) protein_coding-intron (ENSMUSG00000028385.14, intron 1 of 8) 20610 ENSMUSG00000080772.1 ENSMUSG00000080772 ENSMUST00000120410 Gm12543 transcribed_processed_pseudogene Interval_87589 chr19 53599806 53601130 + 0 NA promoter-TSS (ENSMUSG00000024974.10) protein_coding-promoter-TSS (ENSMUSG00000024974.10) -1057 ENSMUSG00000118159.1 ENSMUSG00000118159 ENSMUST00000236407 Gm50402 TEC Interval_41630 chr12 117199795 117200878 + 0 NA intron (ENSMUSG00000056553.14, intron 14 of 22) protein_coding-intron (ENSMUSG00000056553.14, intron 14 of 22) -49121 ENSMUSG00000099907.1 ENSMUSG00000099907 ENSMUST00000186114 Gm10421 processed_transcript Interval_89324 chr2 19344393 19345667 + 0 NA promoter-TSS (ENSMUSG00000087674.7) lincRNA-promoter-TSS (ENSMUSG00000087674.7) 192 ENSMUSG00000087674.7 ENSMUSG00000087674 ENSMUST00000136456 4930447M23Rik lincRNA Interval_86314 chr19 38642336 38642694 + 0 NA intron (ENSMUSG00000024998.17, intron 2 of 2) protein_coding-intron (ENSMUSG00000024998.17, intron 2 of 31) 61809 ENSMUSG00000117935.1 ENSMUSG00000117935 ENSMUST00000237606 Gm8717 processed_pseudogene Interval_115726 chr4 103079705 103080550 + 0 NA intron (ENSMUSG00000035126.19, intron 7 of 14) protein_coding-intron (ENSMUSG00000035126.19, intron 7 of 15) -23400 ENSMUSG00000080744.1 ENSMUSG00000080744 ENSMUST00000119011 Gm12710 processed_pseudogene Interval_149874 chr7 102142461 102143817 + 0 NA intron (ENSMUSG00000063550.8, intron 20 of 22) protein_coding-intron (ENSMUSG00000063550.8, intron 20 of 22) -26311 ENSMUSG00000066279.3 ENSMUSG00000066279 ENSMUST00000211408 Chrna10 protein_coding Interval_84128 chr19 7386052 7386610 + 0 NA Intergenic Intergenic 3794 ENSMUSG00000099923.2 ENSMUSG00000099923 ENSMUST00000186160 1700105P06Rik antisense Interval_38371 chr12 77961587 77962865 + 0 NA Intergenic Intergenic 142644 ENSMUSG00000112551.1 ENSMUSG00000112551 ENSMUST00000218309 Gm8219 processed_pseudogene Interval_140354 chr6 117080881 117081749 + 0 NA Intergenic Intergenic -63010 ENSMUSG00000107903.1 ENSMUSG00000107903 ENSMUST00000203868 Gm43930 TEC Interval_32606 chr11 109102029 109102280 + 0 NA Intergenic Intergenic -35064 ENSMUSG00000064691.1 ENSMUSG00000064691 ENSMUST00000082757 Gm24149 snRNA Interval_6779 chr1 119423569 119424022 + 0 NA Intergenic Intergenic -1547 ENSMUSG00000037035.5 ENSMUSG00000037035 ENSMUST00000038765 Inhbb protein_coding Interval_129272 chr5 118590973 118591263 + 0 NA intron (ENSMUSG00000018076.12, intron 1 of 1) protein_coding-intron (ENSMUSG00000018076.12, intron 1 of 30) -11598 ENSMUSG00000107286.1 ENSMUSG00000107286 ENSMUST00000201539 Gm43788 TEC Interval_161371 chr8 120009662 120010104 + 0 NA intron (ENSMUSG00000031825.16, intron 1 of 14) protein_coding-intron (ENSMUSG00000031825.16, intron 1 of 14) -3325 ENSMUSG00000031825.16 ENSMUSG00000031825 ENSMUST00000144801 Crispld2 protein_coding Interval_5785 chr1 91800413 91803097 + 0 NA exon (ENSMUSG00000007805.4, exon 1 of 2) protein_coding-exon (ENSMUSG00000007805.4, exon 1 of 2) 285 ENSMUSG00000007805.4 ENSMUSG00000007805 ENSMUST00000186075 Twist2 protein_coding Interval_123859 chr5 36018141 36019111 + 0 NA exon (ENSMUSG00000029093.14, exon 27 of 27) protein_coding-exon (ENSMUSG00000029093.14, exon 27 of 27) 34438 ENSMUSG00000029094.12 ENSMUSG00000029094 ENSMUST00000201482 Afap1 protein_coding Interval_155756 chr8 36897496 36898373 + 0 NA intron (ENSMUSG00000031523.16, intron 2 of 2) protein_coding-intron (ENSMUSG00000031523.16, intron 2 of 3) 54502 ENSMUSG00000031523.16 ENSMUSG00000031523 ENSMUST00000179501 Dlc1 protein_coding Interval_71111 chr17 18482396 18482594 + 0 NA Intergenic Intergenic -5841 ENSMUSG00000117305.1 ENSMUSG00000117305 ENSMUST00000233112 Gm49963 processed_pseudogene Interval_29696 chr11 86171327 86171544 + 0 NA intron (ENSMUSG00000034329.16, intron 6 of 19) protein_coding-intron (ENSMUSG00000034329.16, intron 6 of 19) -13894 ENSMUSG00000080823.1 ENSMUSG00000080823 ENSMUST00000121382 Atp5l-ps2 processed_pseudogene Interval_81374 chr18 59729390 59731514 + 0 NA Intergenic Intergenic 7905 ENSMUSG00000089285.1 ENSMUSG00000089285 ENSMUST00000158660 Gm26028 misc_RNA Interval_153676 chr8 4471572 4471843 + 0 NA Intergenic Intergenic 6118 ENSMUSG00000108860.1 ENSMUSG00000108860 ENSMUST00000207275 Gm6070 processed_pseudogene Interval_135264 chr6 37921860 37922193 + 0 NA TTS (ENSMUSG00000029833.17) protein_coding-TTS (ENSMUSG00000029833.17) 51215 ENSMUSG00000029833.17 ENSMUSG00000029833 ENSMUST00000135387 Trim24 protein_coding Interval_56759 chr14 121888066 121888645 + 0 NA intron (ENSMUSG00000041765.6, intron 1 of 5) protein_coding-intron (ENSMUSG00000041765.6, intron 1 of 8) -9851 ENSMUSG00000102112.1 ENSMUSG00000102112 ENSMUST00000185880 1810041H14Rik antisense Interval_50374 chr14 12191420 12191614 + 0 NA intron (ENSMUSG00000021745.14, intron 3 of 3) protein_coding-intron (ENSMUSG00000021745.14, intron 15 of 29) 37534 ENSMUSG00000021745.14 ENSMUSG00000021745 ENSMUST00000134290 Ptprg protein_coding Interval_140284 chr6 116128838 116129231 + 0 NA intron (ENSMUSG00000030126.17, intron 1 of 2) protein_coding-intron (ENSMUSG00000030126.17, intron 1 of 4) 21384 ENSMUSG00000092625.2 ENSMUSG00000092625 ENSMUST00000174032 Gm20404 antisense Interval_3815 chr1 63232886 63233196 + 0 NA Intergenic Intergenic 15458 ENSMUSG00000102536.1 ENSMUSG00000102536 ENSMUST00000194370 1700039I01Rik TEC Interval_28645 chr11 77512760 77513917 + 0 NA promoter-TSS (ENSMUSG00000044328.13) protein_coding-promoter-TSS (ENSMUSG00000044328.13) 2642 ENSMUSG00000044328.13 ENSMUSG00000044328 ENSMUST00000139195 Trp53i13 protein_coding Interval_55176 chr14 79017903 79018923 + 0 NA intron (ENSMUSG00000058997.8, intron 17 of 25) protein_coding-intron (ENSMUSG00000058997.8, intron 17 of 44) -51845 ENSMUSG00000115539.1 ENSMUSG00000115539 ENSMUST00000227296 Gm6997 processed_pseudogene Interval_160271 chr8 107587737 107588930 + 0 NA exon (ENSMUSG00000039067.5, exon 1 of 7) protein_coding-exon (ENSMUSG00000039067.5, exon 1 of 7) 125 ENSMUSG00000039067.5 ENSMUSG00000039067 ENSMUST00000213080 Psmd7 protein_coding Interval_38582 chr12 80259346 80261313 + 0 NA promoter-TSS (ENSMUSG00000015143.15) protein_coding-promoter-TSS (ENSMUSG00000015143.15) 886 ENSMUSG00000112336.1 ENSMUSG00000112336 ENSMUST00000218666 Gm47766 antisense Interval_126998 chr5 99375697 99376066 + 0 NA exon (ENSMUSG00000089809.9, exon 3 of 3) protein_coding-exon (ENSMUSG00000089809.9, exon 3 of 3) 101786 ENSMUSG00000105686.1 ENSMUSG00000105686 ENSMUST00000196434 Gm35394 lincRNA Interval_64443 chr16 11426239 11426921 + 0 NA intron (ENSMUSG00000071669.14, intron 11 of 20) protein_coding-intron (ENSMUSG00000071669.14, intron 4 of 13) 69726 ENSMUSG00000082653.1 ENSMUSG00000082653 ENSMUST00000117770 Gm15897 processed_pseudogene Interval_9493 chr1 157745592 157746077 + 0 NA Intergenic Intergenic -123698 ENSMUSG00000103962.1 ENSMUSG00000103962 ENSMUST00000193203 Gm38213 processed_pseudogene Interval_141431 chr6 128236784 128237753 + 0 NA intron (ENSMUSG00000030353.15, intron 8 of 11) protein_coding-intron (ENSMUSG00000030353.15, intron 9 of 11) -23254 ENSMUSG00000108280.1 ENSMUSG00000108280 ENSMUST00000203793 Gm8703 processed_pseudogene Interval_117064 chr4 119305475 119306021 + 0 NA TTS (ENSMUSG00000060288.13) protein_coding-TTS (ENSMUSG00000060288.13) -10287 ENSMUSG00000102819.1 ENSMUSG00000102819 ENSMUST00000195276 Gm37817 TEC Interval_51805 chr14 32321862 32323497 + 0 NA intron (ENSMUSG00000021913.8, intron 1 of 23) protein_coding-intron (ENSMUSG00000021913.8, intron 1 of 23) 660 ENSMUSG00000021913.8 ENSMUSG00000021913 ENSMUST00000228286 Ogdhl protein_coding Interval_22385 chr11 9364875 9365442 + 0 NA intron (ENSMUSG00000004668.14, intron 29 of 61) protein_coding-intron (ENSMUSG00000004668.14, intron 29 of 61) 171707 ENSMUSG00000004668.14 ENSMUSG00000004668 ENSMUST00000151522 Abca13 protein_coding Interval_39353 chr12 86876800 86877519 + 0 NA Intergenic Intergenic 7639 ENSMUSG00000034168.7 ENSMUSG00000034168 ENSMUST00000038422 Irf2bpl protein_coding Interval_108212 chr3 122502548 122502753 + 0 NA intron (ENSMUSG00000028121.8, intron 1 of 2) protein_coding-intron (ENSMUSG00000028121.8, intron 3 of 11) 37923 ENSMUSG00000087743.1 ENSMUSG00000087743 ENSMUST00000157118 Gm25153 snRNA Interval_138101 chr6 85186942 85188472 + 0 NA exon (ENSMUSG00000033726.8, exon 1 of 3) protein_coding-exon (ENSMUSG00000033726.8, exon 1 of 3) -5812 ENSMUSG00000033726.8 ENSMUSG00000033726 ENSMUST00000173919 Emx1 protein_coding Interval_49061 chr13 107641709 107642705 + 0 NA Intergenic Intergenic -29358 ENSMUSG00000114807.1 ENSMUSG00000114807 ENSMUST00000224826 Gm32090 lincRNA Interval_150157 chr7 107462705 107463954 + 0 NA intron (ENSMUSG00000062542.11, intron 3 of 6) protein_coding-intron (ENSMUSG00000062542.11, intron 3 of 6) -40733 ENSMUSG00000062542.11 ENSMUSG00000062542 ENSMUST00000127444 Syt9 protein_coding Interval_154163 chr8 13174382 13174908 + 0 NA TTS (ENSMUSG00000031447.7) protein_coding-TTS (ENSMUSG00000031447.7) 1464 ENSMUSG00000031447.7 ENSMUSG00000031447 ENSMUST00000209709 Lamp1 protein_coding Interval_37126 chr12 58648417 58648778 + 0 NA Intergenic Intergenic -115309 ENSMUSG00000112487.1 ENSMUSG00000112487 ENSMUST00000219517 Gm18873 processed_pseudogene Interval_44762 chr13 48394072 48395167 + 0 NA intron (ENSMUSG00000114695.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000114695.1, intron 1 of 2) 13893 ENSMUSG00000114695.1 ENSMUSG00000114695 ENSMUST00000225569 Gm48648 lincRNA Interval_15532 chr10 50852255 50852546 + 0 NA TTS (ENSMUSG00000038774.9) protein_coding-TTS (ENSMUSG00000038774.9) 13964 ENSMUSG00000084635.1 ENSMUSG00000084635 ENSMUST00000122686 Gm23883 misc_RNA Interval_89295 chr2 18955594 18955995 + 0 NA intron (ENSMUSG00000026737.12, intron 1 of 9) protein_coding-intron (ENSMUSG00000026737.12, intron 1 of 9) -42549 ENSMUSG00000026736.2 ENSMUSG00000026736 ENSMUST00000238778 4930426L09Rik bidirectional_promoter_lncRNA Interval_68794 chr16 86756272 86756783 + 0 NA Intergenic Intergenic -2372 ENSMUSG00000116906.1 ENSMUSG00000116906 ENSMUST00000232053 Gm49572 processed_pseudogene Interval_162661 chr9 7603061 7603871 + 0 NA Intergenic Intergenic 3972 ENSMUSG00000111764.1 ENSMUSG00000111764 ENSMUST00000214781 Gm47616 processed_pseudogene Interval_153210 chr7 142440480 142441820 + 0 NA promoter-TSS (ENSMUSG00000031097.15) protein_coding-promoter-TSS (ENSMUSG00000031097.15) 1790 ENSMUSG00000031098.18 ENSMUSG00000031098 ENSMUST00000210746 Syt8 protein_coding Interval_109360 chr3 139812750 139812989 + 0 NA promoter-TSS (ENSMUSG00000105880.1) lincRNA-promoter-TSS (ENSMUSG00000105880.1) -105 ENSMUSG00000105880.1 ENSMUSG00000105880 ENSMUST00000197774 Gm43678 lincRNA Interval_19798 chr10 109129010 109129634 + 0 NA Intergenic Intergenic -39047 ENSMUSG00000088554.1 ENSMUSG00000088554 ENSMUST00000157929 Gm22097 misc_RNA Interval_156284 chr8 46952819 46954062 + 0 NA Intergenic Intergenic -4641 ENSMUSG00000109759.1 ENSMUSG00000109759 ENSMUST00000210613 1700011L03Rik lincRNA Interval_128241 chr5 111972276 111972530 + 0 NA Intergenic Intergenic -28168 ENSMUSG00000106060.1 ENSMUSG00000106060 ENSMUST00000197648 Gm42488 lincRNA Interval_50147 chr14 8283825 8285601 + 0 NA Intergenic Intergenic 25082 ENSMUSG00000021750.16 ENSMUSG00000021750 ENSMUST00000137133 Fam107a protein_coding Interval_85340 chr19 24980446 24981180 + 0 NA Intergenic Intergenic -38446 ENSMUSG00000095097.1 ENSMUSG00000095097 ENSMUST00000083233 Gm23658 snoRNA Interval_72754 chr17 31933686 31934469 + 0 NA Intergenic Intergenic -16457 ENSMUSG00000091548.2 ENSMUSG00000091548 ENSMUST00000171455 Gm17572 processed_pseudogene Interval_136963 chr6 65111281 65111565 + 0 NA intron (ENSMUSG00000029920.9, intron 20 of 21) protein_coding-intron (ENSMUSG00000029920.9, intron 22 of 23) 11504 ENSMUSG00000029919.5 ENSMUSG00000029919 ENSMUST00000170252 Hpgds protein_coding Interval_91697 chr2 48318172 48319177 + 0 NA intron (ENSMUSG00000086353.1, intron 1 of 5) lincRNA-intron (ENSMUSG00000086353.1, intron 1 of 5) 19766 ENSMUSG00000083966.1 ENSMUSG00000083966 ENSMUST00000119842 Gm13482 processed_pseudogene Interval_18017 chr10 81378135 81379159 + 0 NA promoter-TSS (ENSMUSG00000020235.16) protein_coding-promoter-TSS (ENSMUSG00000020235.16) -5819 ENSMUSG00000113262.1 ENSMUSG00000113262 ENSMUST00000131968 Gm48551 protein_coding Interval_167605 chr9 71041759 71041954 + 0 NA Intergenic Intergenic -84986 ENSMUSG00000111618.1 ENSMUSG00000111618 ENSMUST00000213527 Gm47268 processed_pseudogene Interval_111311 chr4 18394776 18396330 + 0 NA Intergenic Intergenic -11796 ENSMUSG00000087402.1 ENSMUSG00000087402 ENSMUST00000133363 Gm11867 processed_transcript Interval_119476 chr4 137828980 137830420 + 0 NA Intergenic Intergenic -47509 ENSMUSG00000028766.10 ENSMUSG00000028766 ENSMUST00000143757 Alpl protein_coding Interval_160435 chr8 109480719 109480974 + 0 NA Intergenic Intergenic -14198 ENSMUSG00000031727.8 ENSMUSG00000031727 ENSMUST00000212003 Pmfbp1 protein_coding Interval_53069 chr14 54222370 54222764 + 0 NA intron (ENSMUSG00000076928.5, intron 2 of 3) TR_C_gene-intron (ENSMUSG00000076928.5, intron 2 of 2) 2046 ENSMUSG00000076928.5 ENSMUSG00000076928 ENSMUST00000198398 Trac TR_C_gene Interval_23529 chr11 23156643 23156898 + 0 NA intron (ENSMUSG00000086366.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000086366.1, intron 1 of 2) 4630 ENSMUSG00000086366.1 ENSMUSG00000086366 ENSMUST00000141678 1700061J23Rik lincRNA Interval_33001 chr11 113605454 113605925 + 0 NA intron (ENSMUSG00000041654.15, intron 1 of 4) protein_coding-intron (ENSMUSG00000041654.15, intron 1 of 2) -13653 ENSMUSG00000047904.6 ENSMUSG00000047904 ENSMUST00000067591 Sstr2 protein_coding Interval_105847 chr3 89688678 89689165 + 0 NA Intergenic Intergenic -26101 ENSMUSG00000027951.16 ENSMUSG00000027951 ENSMUST00000131030 Adar protein_coding Interval_95951 chr2 118642529 118643471 + 0 NA Intergenic Intergenic 12423 ENSMUSG00000040084.9 ENSMUSG00000040084 ENSMUST00000126013 Bub1b protein_coding Interval_116789 chr4 117303423 117306033 + 0 NA intron (ENSMUSG00000028677.19, intron 2 of 13) protein_coding-intron (ENSMUSG00000028677.19, intron 3 of 14) 8584 ENSMUSG00000085749.1 ENSMUSG00000085749 ENSMUST00000139618 Gm12843 antisense Interval_169240 chr9 95712759 95713019 + 0 NA intron (ENSMUSG00000032839.13, intron 7 of 10) protein_coding-intron (ENSMUSG00000032839.13, intron 8 of 11) 32583 ENSMUSG00000015354.8 ENSMUSG00000015354 ENSMUST00000151210 Pcolce2 protein_coding Interval_34940 chr12 14394347 14395194 + 0 NA Intergenic Intergenic 98474 ENSMUSG00000113961.1 ENSMUSG00000113961 ENSMUST00000220577 Gm48498 processed_pseudogene Interval_101811 chr3 9660398 9663282 + 0 NA Intergenic Intergenic 5320 ENSMUSG00000103876.1 ENSMUSG00000103876 ENSMUST00000195844 Gm17806 processed_pseudogene Interval_84286 chr19 9860637 9861647 + 0 NA Intergenic Intergenic 5823 ENSMUSG00000076370.1 ENSMUSG00000076370 ENSMUST00000102415 Gm22369 miRNA Interval_164893 chr9 42870425 42870850 + 0 NA intron (ENSMUSG00000032017.14, intron 1 of 20) protein_coding-intron (ENSMUSG00000032017.14, intron 1 of 20) -8508 ENSMUSG00000076355.2 ENSMUSG00000076355 ENSMUST00000102400 Gm27509 miRNA Interval_111530 chr4 22497266 22498955 + 0 NA Intergenic Intergenic 7562 ENSMUSG00000107859.1 ENSMUSG00000107859 ENSMUST00000203909 Gm30731 lincRNA Interval_26841 chr11 60982025 60982363 + 0 NA Intergenic Intergenic 50140 ENSMUSG00000018932.9 ENSMUSG00000018932 ENSMUST00000137609 Map2k3 protein_coding Interval_64955 chr16 17502268 17503219 + 0 NA promoter-TSS (ENSMUSG00000022763.18) protein_coding-promoter-TSS (ENSMUSG00000022763.18) -149 ENSMUSG00000022763.18 ENSMUSG00000022763 ENSMUST00000232421 Aifm3 protein_coding Interval_77028 chr17 85777077 85777375 + 0 NA Intergenic Intergenic 46818 ENSMUSG00000100345.1 ENSMUSG00000100345 ENSMUST00000186162 Gm29418 lincRNA Interval_169350 chr9 96611767 96613254 + 0 NA intron (ENSMUSG00000032413.12, intron 1 of 19) protein_coding-intron (ENSMUSG00000032413.12, intron 1 of 23) 28207 ENSMUSG00000100522.1 ENSMUSG00000100522 ENSMUST00000190191 Gm19280 processed_pseudogene Interval_152617 chr7 135396198 135396714 + 0 NA exon (ENSMUSG00000073803.3, exon 1 of 1) TEC-exon (ENSMUSG00000073803.3, exon 1 of 1) 121 ENSMUSG00000073803.3 ENSMUSG00000073803 ENSMUST00000097982 4930544L04Rik TEC Interval_145423 chr7 34674887 34676551 + 0 NA TTS (ENSMUSG00000060402.8) protein_coding-TTS (ENSMUSG00000060402.8) -1720 ENSMUSG00000087127.1 ENSMUSG00000087127 ENSMUST00000126294 Gm12756 lincRNA Interval_72374 chr17 29465501 29466047 + 0 NA promoter-TSS (ENSMUSG00000097125.2) antisense-promoter-TSS (ENSMUSG00000097125.2) 3857 ENSMUSG00000097125.2 ENSMUSG00000097125 ENSMUST00000234684 Gm26885 antisense Interval_93511 chr2 73663650 73663883 + 0 NA intron (ENSMUSG00000056486.18, intron 5 of 7) protein_coding-intron (ENSMUSG00000056486.18, intron 6 of 12) 5496 ENSMUSG00000085838.1 ENSMUSG00000085838 ENSMUST00000123613 Chn1os1 antisense Interval_112492 chr4 41598731 41598920 + 0 NA intron (ENSMUSG00000061322.15, intron 4 of 19) protein_coding-intron (ENSMUSG00000061322.15, intron 4 of 19) -29287 ENSMUSG00000028439.14 ENSMUSG00000028439 ENSMUST00000146276 Fam219a protein_coding Interval_50538 chr14 14787179 14787524 + 0 NA TTS (ENSMUSG00000021733.11) protein_coding-TTS (ENSMUSG00000021733.11) -16064 ENSMUSG00000042567.20 ENSMUSG00000042567 ENSMUST00000136826 Nek10 protein_coding Interval_55320 chr14 82629514 82629738 + 0 NA Intergenic Intergenic -140765 ENSMUSG00000115051.1 ENSMUSG00000115051 ENSMUST00000227503 Gm49049 processed_pseudogene Interval_48380 chr13 98629321 98629527 + 0 NA Intergenic Intergenic 7986 ENSMUSG00000046082.4 ENSMUSG00000046082 ENSMUST00000050389 Tmem174 protein_coding Interval_99220 chr2 158180936 158181825 + 0 NA Intergenic Intergenic -10628 ENSMUSG00000078957.3 ENSMUSG00000078957 ENSMUST00000109506 1700060C20Rik antisense Interval_140692 chr6 120612556 120613082 + 0 NA Intergenic Intergenic -32643 ENSMUSG00000107580.1 ENSMUSG00000107580 ENSMUST00000204159 Gm44124 TEC Interval_134053 chr6 18170264 18170914 + 0 NA promoter-TSS (ENSMUSG00000041301.15) protein_coding-promoter-TSS (ENSMUSG00000041301.15) -13469 ENSMUSG00000082289.1 ENSMUSG00000082289 ENSMUST00000121139 Gm15596 processed_pseudogene Interval_158104 chr8 78745749 78746227 + 0 NA Intergenic Intergenic 28557 ENSMUSG00000112190.1 ENSMUSG00000112190 ENSMUST00000218647 Gm47209 unitary_pseudogene Interval_73219 chr17 35638715 35639307 + 0 NA intron (ENSMUSG00000073408.2, intron 1 of 2) protein_coding-intron (ENSMUSG00000073408.2, intron 1 of 2) 4684 ENSMUSG00000073408.2 ENSMUSG00000073408 ENSMUST00000095467 Mucl3 protein_coding Interval_90998 chr2 34065001 34065487 + 0 NA intron (ENSMUSG00000087461.2, intron 1 of 3) lincRNA-intron (ENSMUSG00000087461.2, intron 1 of 3) 42491 ENSMUSG00000087461.2 ENSMUSG00000087461 ENSMUST00000149707 C230014O12Rik lincRNA Interval_126672 chr5 91970986 91971502 + 0 NA TTS (ENSMUSG00000102644.5) transcribed_unitary_pseudogene-TTS (ENSMUSG00000102644.5) -8518 ENSMUSG00000029397.15 ENSMUSG00000029397 ENSMUST00000200905 Rchy1 protein_coding Interval_37961 chr12 73380041 73380767 + 0 NA intron (ENSMUSG00000056359.6, intron 2 of 3) lincRNA-intron (ENSMUSG00000056359.6, intron 2 of 3) 25323 ENSMUSG00000113425.1 ENSMUSG00000113425 ENSMUST00000222671 Gm48653 lincRNA Interval_42387 chr13 12541761 12542789 + 0 NA intron (ENSMUSG00000114115.1, intron 2 of 2) lincRNA-intron (ENSMUSG00000114115.1, intron 2 of 2) -1125 ENSMUSG00000114115.1 ENSMUSG00000114115 ENSMUST00000223193 Gm30239 lincRNA Interval_45501 chr13 55507844 55508350 + 0 NA promoter-TSS (ENSMUSG00000099096.1) miRNA-promoter-TSS (ENSMUSG00000099096.1) -405 ENSMUSG00000099096.1 ENSMUSG00000099096 ENSMUST00000184300 Mir6945 miRNA Interval_31902 chr11 103721318 103722960 + 0 NA intron (ENSMUSG00000085154.7, intron 2 of 2) processed_transcript-intron (ENSMUSG00000085154.7, intron 2 of 2) -1811 ENSMUSG00000086794.1 ENSMUSG00000086794 ENSMUST00000150442 Gm11642 processed_transcript Interval_113326 chr4 53478964 53479221 + 0 NA intron (ENSMUSG00000028412.17, intron 1 of 3) protein_coding-intron (ENSMUSG00000028412.17, intron 1 of 15) 38421 ENSMUSG00000028412.17 ENSMUSG00000028412 ENSMUST00000133582 Slc44a1 protein_coding Interval_62011 chr15 85873702 85873910 + 0 NA exon (ENSMUSG00000022385.11, exon 9 of 12) protein_coding-exon (ENSMUSG00000022385.11, exon 9 of 12) 5284 ENSMUSG00000116435.1 ENSMUSG00000116435 ENSMUST00000229871 Gm49548 bidirectional_promoter_lncRNA Interval_39029 chr12 84562328 84562771 + 0 NA Intergenic Intergenic -7291 ENSMUSG00000021239.12 ENSMUSG00000021239 ENSMUST00000169934 Vsx2 protein_coding Interval_107249 chr3 104942724 104943159 + 0 NA Intergenic Intergenic 15432 ENSMUSG00000105925.1 ENSMUSG00000105925 ENSMUST00000200502 Gm43846 sense_intronic Interval_36133 chr12 36205537 36206825 + 0 NA Intergenic Intergenic 12037 ENSMUSG00000020545.14 ENSMUSG00000020545 ENSMUST00000222145 Lrrc72 protein_coding Interval_17129 chr10 71734063 71735604 + 0 NA Intergenic Intergenic -17076 ENSMUSG00000112717.1 ENSMUSG00000112717 ENSMUST00000217686 Gm6362 processed_pseudogene Interval_23376 chr11 22003675 22003895 + 0 NA promoter-TSS (ENSMUSG00000005917.15) protein_coding-promoter-TSS (ENSMUSG00000005917.15) -2075 ENSMUSG00000005917.15 ENSMUSG00000005917 ENSMUST00000147486 Otx1 protein_coding Interval_154647 chr8 22302975 22303553 + 0 NA intron (ENSMUSG00000031481.8, intron 4 of 28) protein_coding-intron (ENSMUSG00000031481.8, intron 4 of 27) 19823 ENSMUSG00000031481.8 ENSMUSG00000031481 ENSMUST00000077194 Tpte protein_coding Interval_116998 chr4 118859653 118860441 + 0 NA Intergenic Intergenic -4607 ENSMUSG00000073769.4 ENSMUSG00000073769 ENSMUST00000094831 Olfr1331 protein_coding Interval_172773 chrX 48513028 48514071 + 0 NA promoter-TSS (ENSMUSG00000036932.14) protein_coding-promoter-TSS (ENSMUSG00000036932.14) -5736 ENSMUSG00000031104.2 ENSMUSG00000031104 ENSMUST00000033430 Rab33a protein_coding Interval_1951 chr1 34874123 34874419 + 0 NA TTS (ENSMUSG00000026123.11) protein_coding-TTS (ENSMUSG00000026123.11) -3385 ENSMUSG00000026123.11 ENSMUSG00000026123 ENSMUST00000191722 Plekhb2 protein_coding Interval_5384 chr1 88328102 88329047 + 0 NA intron (ENSMUSG00000036251.16, intron 5 of 24) protein_coding-intron (ENSMUSG00000036251.16, intron 6 of 25) 9661 ENSMUSG00000036251.16 ENSMUSG00000036251 ENSMUST00000171176 Trpm8 protein_coding Interval_14766 chr10 39683778 39684878 + 0 NA intron (ENSMUSG00000087177.7, intron 1 of 1) antisense-intron (ENSMUSG00000087177.7, intron 1 of 3) 22239 ENSMUSG00000111847.1 ENSMUSG00000111847 ENSMUST00000214635 Gm8899 processed_pseudogene Interval_59108 chr15 44045787 44046036 + 0 NA Intergenic Intergenic -151056 ENSMUSG00000038760.14 ENSMUSG00000038760 ENSMUST00000227505 Trhr protein_coding Interval_110019 chr3 152514909 152515283 + 0 NA intron (ENSMUSG00000039058.11, intron 1 of 6) protein_coding-intron (ENSMUSG00000039058.11, intron 8 of 13) 11656 ENSMUSG00000039058.11 ENSMUSG00000039058 ENSMUST00000198552 Ak5 protein_coding Interval_78968 chr18 23333045 23333338 + 0 NA Intergenic Intergenic 116522 ENSMUSG00000117475.1 ENSMUSG00000117475 ENSMUST00000234562 Gm7788 processed_pseudogene Interval_172712 chrX 46677754 46677955 + 0 NA intron (ENSMUSG00000101233.1, intron 1 of 3) lincRNA-intron (ENSMUSG00000101233.1, intron 1 of 3) 96245 ENSMUSG00000101233.1 ENSMUSG00000101233 ENSMUST00000186570 Gm29242 lincRNA Interval_15498 chr10 49753006 49753200 + 0 NA intron (ENSMUSG00000056073.16, intron 2 of 7) protein_coding-intron (ENSMUSG00000056073.16, intron 1 of 15) -35724 ENSMUSG00000111934.1 ENSMUSG00000111934 ENSMUST00000218448 Gm48123 TEC Interval_73304 chr17 36093340 36094761 + 0 NA promoter-TSS (ENSMUSG00000092304.2) unprocessed_pseudogene-promoter-TSS (ENSMUSG00000092304.2) -131 ENSMUSG00000092304.2 ENSMUSG00000092304 ENSMUST00000174261 Gm20530 unprocessed_pseudogene Interval_142180 chr6 137878335 137878501 + 0 NA Intergenic Intergenic 41553 ENSMUSG00000094466.1 ENSMUSG00000094466 ENSMUST00000177773 Gm24308 miRNA Interval_6207 chr1 101756310 101757893 + 0 NA Intergenic Intergenic -2558 ENSMUSG00000100065.1 ENSMUSG00000100065 ENSMUST00000189423 Gm18969 processed_pseudogene Interval_127255 chr5 101896251 101896543 + 0 NA intron (ENSMUSG00000043940.15, intron 32 of 64) protein_coding-intron (ENSMUSG00000043940.15, intron 35 of 66) 58945 ENSMUSG00000092354.7 ENSMUSG00000092354 ENSMUST00000174312 Gm20548 antisense Interval_71579 chr17 24657215 24658627 + 0 NA intron (ENSMUSG00000071230.7, intron 1 of 1) protein_coding-intron (ENSMUSG00000071230.7, intron 1 of 1) 536 ENSMUSG00000071230.7 ENSMUSG00000071230 ENSMUST00000095544 Npw protein_coding Interval_162690 chr9 7836444 7837937 + 0 NA promoter-TSS (ENSMUSG00000057367.12) protein_coding-promoter-TSS (ENSMUSG00000057367.12) -385 ENSMUSG00000057367.12 ENSMUSG00000057367 ENSMUST00000054878 Birc2 protein_coding Interval_132528 chr5 145764612 145765015 + 0 NA Intergenic Intergenic 4268 ENSMUSG00000105661.1 ENSMUSG00000105661 ENSMUST00000198575 Gm43626 processed_pseudogene Interval_152026 chr7 128372154 128372581 + 0 NA Intergenic Intergenic 31900 ENSMUSG00000108608.1 ENSMUSG00000108608 ENSMUST00000205523 Gm6916 transcribed_processed_pseudogene Interval_15736 chr10 55408007 55408258 + 0 NA Intergenic Intergenic 283770 ENSMUSG00000112755.1 ENSMUSG00000112755 ENSMUST00000219650 Gm46190 processed_pseudogene Interval_97545 chr2 139700413 139700876 + 0 NA intron (ENSMUSG00000074766.10, intron 1 of 5) protein_coding-intron (ENSMUSG00000074766.10, intron 1 of 5) 22466 ENSMUSG00000074766.10 ENSMUSG00000074766 ENSMUST00000099307 Ism1 protein_coding Interval_124301 chr5 43754355 43754649 + 0 NA promoter-TSS (ENSMUSG00000104728.1) TEC-promoter-TSS (ENSMUSG00000104728.1) -231 ENSMUSG00000104728.1 ENSMUSG00000104728 ENSMUST00000196543 Gm42462 TEC Interval_167112 chr9 65390351 65391795 + 0 NA exon (ENSMUSG00000054978.3, exon 1 of 1) protein_coding-exon (ENSMUSG00000054978.3, exon 1 of 1) 579 ENSMUSG00000054978.3 ENSMUSG00000054978 ENSMUST00000068307 Kbtbd13 protein_coding Interval_83219 chr18 82827840 82829281 + 0 NA Intergenic Intergenic -27334 ENSMUSG00000097738.2 ENSMUSG00000097738 ENSMUST00000180631 4930445N18Rik lincRNA Interval_130949 chr5 134216087 134216844 + 0 NA TTS (ENSMUSG00000015942.9) protein_coding-TTS (ENSMUSG00000015942.9) 5757 ENSMUSG00000015950.13 ENSMUSG00000015950 ENSMUST00000126934 Ncf1 protein_coding Interval_160808 chr8 112569618 112570064 + 0 NA promoter-TSS (ENSMUSG00000031772.17) protein_coding-promoter-TSS (ENSMUSG00000031772.17) -266 ENSMUSG00000098075.1 ENSMUSG00000098075 ENSMUST00000182027 Gm26994 antisense Interval_26876 chr11 61237411 61237663 + 0 NA intron (ENSMUSG00000010025.19, intron 9 of 9) protein_coding-intron (ENSMUSG00000010025.19, intron 9 of 9) 13473 ENSMUSG00000010025.19 ENSMUSG00000010025 ENSMUST00000149298 Aldh3a2 protein_coding Interval_47093 chr13 75650170 75650467 + 0 NA Intergenic Intergenic 5272 ENSMUSG00000076236.1 ENSMUSG00000076236 ENSMUST00000102281 Mir682 miRNA Interval_155576 chr8 34739825 34741208 + 0 NA Intergenic Intergenic -66781 ENSMUSG00000031530.6 ENSMUSG00000031530 ENSMUST00000033930 Dusp4 protein_coding Interval_15624 chr10 52417046 52418363 + 0 NA exon (ENSMUSG00000023068.16, exon 1 of 5) protein_coding-exon (ENSMUSG00000023068.16, exon 1 of 5) -11227 ENSMUSG00000023068.16 ENSMUSG00000023068 ENSMUST00000218983 Nus1 protein_coding Interval_5155 chr1 86087811 86088241 + 0 NA TTS (ENSMUSG00000077274.1) snoRNA-TTS (ENSMUSG00000077274.1) 725 ENSMUSG00000077274.1 ENSMUSG00000077274 ENSMUST00000104086 Gm22786 snoRNA Interval_120252 chr4 144930123 144930944 + 0 NA Intergenic Intergenic 28315 ENSMUSG00000103911.1 ENSMUSG00000103911 ENSMUST00000193467 Gm38074 TEC Interval_133636 chr6 7856435 7857614 + 0 NA intron (ENSMUSG00000042460.5, intron 1 of 3) protein_coding-intron (ENSMUSG00000042460.5, intron 1 of 3) 3153 ENSMUSG00000107549.1 ENSMUSG00000107549 ENSMUST00000203289 Gm43961 TEC Interval_13572 chr10 19849364 19852016 + 0 NA exon (ENSMUSG00000050473.5, exon 1 of 2) protein_coding-exon (ENSMUSG00000050473.5, exon 1 of 2) 769 ENSMUSG00000050473.5 ENSMUSG00000050473 ENSMUST00000059805 Slc35d3 protein_coding Interval_83218 chr18 82825630 82826418 + 0 NA Intergenic Intergenic -29870 ENSMUSG00000097738.2 ENSMUSG00000097738 ENSMUST00000180631 4930445N18Rik lincRNA Interval_59353 chr15 51830174 51830547 + 0 NA intron (ENSMUSG00000022312.11, intron 2 of 2) protein_coding-intron (ENSMUSG00000022312.11, intron 2 of 7) 5897 ENSMUSG00000022312.11 ENSMUSG00000022312 ENSMUST00000228583 Eif3h protein_coding Interval_31561 chr11 101370930 101371137 + 0 NA intron (ENSMUSG00000078650.2, intron 2 of 4) protein_coding-intron (ENSMUSG00000078650.2, intron 2 of 4) 3472 ENSMUSG00000078650.2 ENSMUSG00000078650 ENSMUST00000019469 G6pc protein_coding Interval_22267 chr11 8438620 8439110 + 0 NA intron (ENSMUSG00000020422.14, intron 27 of 30) protein_coding-intron (ENSMUSG00000020422.14, intron 27 of 30) -55012 ENSMUSG00000083553.1 ENSMUSG00000083553 ENSMUST00000117240 Gm11989 processed_pseudogene Interval_83728 chr19 3986213 3986700 + 0 NA promoter-TSS (ENSMUSG00000024866.10) protein_coding-promoter-TSS (ENSMUSG00000024866.10) -115 ENSMUSG00000024866.10 ENSMUSG00000024866 ENSMUST00000235592 Acy3 protein_coding Interval_87272 chr19 47327716 47328753 + 0 NA intron (ENSMUSG00000053617.12, intron 6 of 13) protein_coding-intron (ENSMUSG00000053617.12, intron 6 of 14) -54645 ENSMUSG00000098786.1 ENSMUSG00000098786 ENSMUST00000183658 Mir6995 miRNA Interval_130490 chr5 128289641 128291676 + 0 NA intron (ENSMUSG00000034310.8, intron 1 of 8) protein_coding-intron (ENSMUSG00000034310.8, intron 1 of 8) 8210 ENSMUSG00000105772.1 ENSMUSG00000105772 ENSMUST00000197976 Gm42496 TEC Interval_163572 chr9 22285801 22286182 + 0 NA intron (ENSMUSG00000066829.7, intron 4 of 6) protein_coding-intron (ENSMUSG00000066829.7, intron 4 of 7) 9581 ENSMUSG00000111292.1 ENSMUSG00000111292 ENSMUST00000216615 Gm48627 TEC Interval_97206 chr2 132240199 132240967 + 0 NA exon (ENSMUSG00000027341.10, exon 4 of 4) protein_coding-exon (ENSMUSG00000027341.10, exon 4 of 4) 7205 ENSMUSG00000027341.10 ENSMUSG00000027341 ENSMUST00000141813 Tmem230 protein_coding Interval_69486 chr16 93826053 93827035 + 0 NA intron (ENSMUSG00000116927.1, intron 1 of 2) antisense-intron (ENSMUSG00000116927.1, intron 1 of 2) 6475 ENSMUSG00000116927.1 ENSMUSG00000116927 ENSMUST00000231503 Gm30881 antisense Interval_112585 chr4 43414813 43415273 + 0 NA TTS (ENSMUSG00000035969.15) protein_coding-TTS (ENSMUSG00000035969.15) 347 ENSMUSG00000035969.15 ENSMUSG00000035969 ENSMUST00000123447 Rusc2 protein_coding Interval_17910 chr10 80765865 80767362 + 0 NA TTS (ENSMUSG00000075558.3) antisense-TTS (ENSMUSG00000075558.3) 2374 ENSMUSG00000075558.3 ENSMUSG00000075558 ENSMUST00000105760 Gm17151 antisense Interval_81978 chr18 66706773 66706973 + 0 NA Intergenic Intergenic 30512 ENSMUSG00000088187.1 ENSMUSG00000088187 ENSMUST00000157562 Gm50110 misc_RNA Interval_94365 chr2 90532067 90532450 + 0 NA intron (ENSMUSG00000025314.16, intron 1 of 23) protein_coding-intron (ENSMUSG00000025314.16, intron 1 of 23) 48389 ENSMUSG00000025314.16 ENSMUSG00000025314 ENSMUST00000168621 Ptprj protein_coding Interval_66418 chr16 33744692 33745644 + 0 NA intron (ENSMUSG00000075254.12, intron 12 of 16) protein_coding-intron (ENSMUSG00000075254.12, intron 12 of 16) -48869 ENSMUSG00000022824.12 ENSMUSG00000022824 ENSMUST00000023520 Muc13 protein_coding Interval_127659 chr5 106367440 106368408 + 0 NA Intergenic Intergenic -1075 ENSMUSG00000106594.1 ENSMUSG00000106594 ENSMUST00000198220 4930432H08Rik lincRNA Interval_46142 chr13 61986848 61987189 + 0 NA Intergenic Intergenic -19650 ENSMUSG00000113014.1 ENSMUSG00000113014 ENSMUST00000221926 Selenok-ps8 processed_pseudogene Interval_104064 chr3 57988275 57988581 + 0 NA Intergenic Intergenic 26234 ENSMUSG00000106246.1 ENSMUSG00000106246 ENSMUST00000198022 Gm18867 processed_pseudogene Interval_27932 chr11 70962208 70962474 + 0 NA promoter-TSS (ENSMUSG00000040667.11) protein_coding-promoter-TSS (ENSMUSG00000040667.11) -5428 ENSMUSG00000040667.11 ENSMUSG00000040667 ENSMUST00000145336 Nup88 protein_coding Interval_7293 chr1 128480478 128481387 + 0 NA Intergenic Intergenic -9108 ENSMUSG00000088196.1 ENSMUSG00000088196 ENSMUST00000157571 Gm23902 snoRNA Interval_28914 chr11 79241441 79241634 + 0 NA intron (ENSMUSG00000017677.11, intron 3 of 4) protein_coding-intron (ENSMUSG00000017677.11, intron 7 of 8) 1412 ENSMUSG00000017677.11 ENSMUSG00000017677 ENSMUST00000137890 Wsb1 protein_coding Interval_155309 chr8 31135100 31136027 + 0 NA Intergenic Intergenic 14404 ENSMUSG00000088252.1 ENSMUSG00000088252 ENSMUST00000157627 Snord13 snoRNA Interval_54596 chr14 70954494 70954837 + 0 NA intron (ENSMUSG00000022103.10, intron 1 of 6) protein_coding-intron (ENSMUSG00000022103.10, intron 4 of 8) 64137 ENSMUSG00000022103.10 ENSMUSG00000022103 ENSMUST00000227633 Gfra2 protein_coding Interval_86528 chr19 41474026 41474239 + 0 NA Intergenic Intergenic 14319 ENSMUSG00000044065.3 ENSMUSG00000044065 ENSMUST00000057038 Gm9788 processed_pseudogene Interval_95413 chr2 108827047 108828144 + 0 NA Intergenic Intergenic 47663 ENSMUSG00000083424.3 ENSMUSG00000083424 ENSMUST00000121779 Rpl35a-ps4 processed_pseudogene Interval_168387 chr9 79924120 79924356 + 0 NA intron (ENSMUSG00000034898.17, intron 1 of 1) protein_coding-intron (ENSMUSG00000034898.17, intron 1 of 5) 11038 ENSMUSG00000092581.1 ENSMUSG00000092581 ENSMUST00000172721 Gm3211 processed_transcript Interval_73375 chr17 36859878 36860097 + 0 NA TTS (ENSMUSG00000050747.14) protein_coding-TTS (ENSMUSG00000050747.14) 7223 ENSMUSG00000050747.14 ENSMUSG00000050747 ENSMUST00000173639 Trim15 protein_coding Interval_102551 chr3 27695476 27695938 + 0 NA intron (ENSMUSG00000039286.12, intron 1 of 26) protein_coding-intron (ENSMUSG00000039286.12, intron 1 of 25) 14691 ENSMUSG00000039286.12 ENSMUSG00000039286 ENSMUST00000193779 Fndc3b protein_coding Interval_123050 chr5 29253635 29254370 + 0 NA intron (ENSMUSG00000010721.15, intron 13 of 14) protein_coding-intron (ENSMUSG00000010721.15, intron 14 of 16) 26295 ENSMUSG00000105741.1 ENSMUSG00000105741 ENSMUST00000199610 C79130 TEC Interval_59594 chr15 55766799 55766968 + 0 NA intron (ENSMUSG00000060429.12, intron 2 of 6) protein_coding-intron (ENSMUSG00000060429.12, intron 2 of 6) 139427 ENSMUSG00000060429.12 ENSMUSG00000060429 ENSMUST00000140574 Sntb1 protein_coding Interval_161068 chr8 117289411 117290403 + 0 NA intron (ENSMUSG00000034390.16, intron 1 of 10) protein_coding-intron (ENSMUSG00000034390.16, intron 1 of 20) 131770 ENSMUSG00000052557.11 ENSMUSG00000052557 ENSMUST00000162997 Gan protein_coding Interval_61941 chr15 85376827 85377070 + 0 NA intron (ENSMUSG00000016541.10, intron 5 of 11) protein_coding-intron (ENSMUSG00000016541.10, intron 5 of 11) -25694 ENSMUSG00000064764.1 ENSMUSG00000064764 ENSMUST00000082830 Gm23517 snRNA Interval_17149 chr10 72666021 72666229 + 0 NA intron (ENSMUSG00000019923.14, intron 7 of 7) protein_coding-intron (ENSMUSG00000019923.14, intron 7 of 7) 9881 ENSMUSG00000019923.14 ENSMUSG00000019923 ENSMUST00000219352 Zwint protein_coding Interval_19083 chr10 94341692 94341925 + 0 NA intron (ENSMUSG00000020023.18, intron 2 of 2) protein_coding-intron (ENSMUSG00000020023.18, intron 1 of 2) -43105 ENSMUSG00000053420.6 ENSMUSG00000053420 ENSMUST00000065826 Gm4792 protein_coding Interval_29060 chr11 80105775 80106113 + 0 NA intron (ENSMUSG00000017550.14, intron 1 of 2) protein_coding-intron (ENSMUSG00000017550.14, intron 6 of 22) 2941 ENSMUSG00000017550.14 ENSMUSG00000017550 ENSMUST00000154168 Atad5 protein_coding Interval_107493 chr3 108089318 108090241 + 0 NA Intergenic Intergenic -3359 ENSMUSG00000009108.15 ENSMUSG00000009108 ENSMUST00000130013 Gnat2 protein_coding Interval_65361 chr16 21835017 21835253 + 0 NA intron (ENSMUSG00000116862.1, intron 2 of 2) protein_coding-intron (ENSMUSG00000033618.7, intron 2 of 14) 1420 ENSMUSG00000116862.1 ENSMUSG00000116862 ENSMUST00000232439 Gm49607 lincRNA Interval_38623 chr12 80620584 80620831 + 0 NA intron (ENSMUSG00000021130.8, intron 3 of 3) protein_coding-intron (ENSMUSG00000021130.8, intron 3 of 3) 2226 ENSMUSG00000089074.1 ENSMUSG00000089074 ENSMUST00000158449 Gm23817 snRNA Interval_172380 chrX 15795734 15796534 + 0 NA Intergenic Intergenic 88352 ENSMUSG00000093014.1 ENSMUSG00000093014 ENSMUST00000175273 Gm22464 miRNA Interval_18831 chr10 91156655 91157077 + 0 NA TTS (ENSMUSG00000019961.17) protein_coding-TTS (ENSMUSG00000019961.17) 13596 ENSMUSG00000019961.17 ENSMUSG00000019961 ENSMUST00000213270 Tmpo protein_coding Interval_156516 chr8 49084526 49084895 + 0 NA Intergenic Intergenic 20831 ENSMUSG00000110606.1 ENSMUSG00000110606 ENSMUST00000212466 Gm45829 lincRNA Interval_96925 chr2 129584736 129585428 + 0 NA Intergenic Intergenic -7757 ENSMUSG00000037902.18 ENSMUSG00000037902 ENSMUST00000162764 Sirpa protein_coding Interval_163151 chr9 15850712 15851526 + 0 NA intron (ENSMUSG00000050901.6, intron 2 of 2) protein_coding-intron (ENSMUSG00000050901.6, intron 2 of 2) 23437 ENSMUSG00000050901.6 ENSMUSG00000050901 ENSMUST00000057920 Mtnr1b protein_coding Interval_157290 chr8 69033307 69033678 + 0 NA Intergenic Intergenic -11262 ENSMUSG00000089995.2 ENSMUSG00000089995 ENSMUST00000162457 Gm15716 antisense Interval_35852 chr12 31238805 31240031 + 0 NA Intergenic Intergenic -1352 ENSMUSG00000112187.1 ENSMUSG00000112187 ENSMUST00000219110 Gm6993 protein_coding Interval_81266 chr18 56974786 56975852 + 0 NA promoter-TSS (ENSMUSG00000024592.15) protein_coding-promoter-TSS (ENSMUSG00000024592.15) -73 ENSMUSG00000024592.15 ENSMUSG00000024592 ENSMUST00000152087 C330018D20Rik protein_coding Interval_169777 chr9 101181704 101182750 + 0 NA intron (ENSMUSG00000043154.15, intron 3 of 11) protein_coding-intron (ENSMUSG00000043154.15, intron 3 of 12) 5681 ENSMUSG00000102452.1 ENSMUSG00000102452 ENSMUST00000195306 Gm38344 TEC Interval_124435 chr5 46908264 46909404 + 0 NA Intergenic Intergenic 114154 ENSMUSG00000107113.1 ENSMUSG00000107113 ENSMUST00000202986 Gm43092 TEC Interval_58774 chr15 38004489 38005097 + 0 NA intron (ENSMUSG00000037487.7, intron 28 of 58) protein_coding-intron (ENSMUSG00000037487.7, intron 28 of 58) -34178 ENSMUSG00000037487.7 ENSMUSG00000037487 ENSMUST00000227143 Ubr5 protein_coding Interval_71500 chr17 24189902 24190698 + 0 NA intron (ENSMUSG00000036473.16, intron 1 of 7) protein_coding-intron (ENSMUSG00000036473.16, intron 1 of 7) 15196 ENSMUSG00000036473.16 ENSMUSG00000036473 ENSMUST00000201716 Tbc1d24 protein_coding Interval_171381 chr9 117188240 117188606 + 0 NA intron (ENSMUSG00000039607.17, intron 1 of 13) protein_coding-intron (ENSMUSG00000039607.17, intron 1 of 12) -64113 ENSMUSG00000079669.2 ENSMUSG00000079669 ENSMUST00000172075 Gm17396 processed_transcript Interval_120709 chr4 150219680 150221425 + 0 NA Intergenic Intergenic -7483 ENSMUSG00000082140.1 ENSMUSG00000082140 ENSMUST00000117930 Gm13094 processed_pseudogene Interval_22316 chr11 8711141 8711662 + 0 NA Intergenic Intergenic -46720 ENSMUSG00000020422.14 ENSMUSG00000020422 ENSMUST00000134823 Tns3 protein_coding Interval_25820 chr11 51931857 51932424 + 0 NA Intergenic Intergenic -32242 ENSMUSG00000093325.1 ENSMUSG00000093325 ENSMUST00000175584 Gm26061 snRNA Interval_9085 chr1 153493151 153494828 + 0 NA Intergenic Intergenic -15850 ENSMUSG00000042699.11 ENSMUSG00000042699 ENSMUST00000189425 Dhx9 protein_coding Interval_164693 chr9 40635339 40636338 + 0 NA Intergenic Intergenic -19452 ENSMUSG00000111504.1 ENSMUSG00000111504 ENSMUST00000216936 Gm48284 lincRNA Interval_152177 chr7 130428063 130428349 + 0 NA intron (ENSMUSG00000030850.17, intron 11 of 12) protein_coding-intron (ENSMUSG00000030850.17, intron 10 of 11) 29467 ENSMUSG00000108940.1 ENSMUSG00000108940 ENSMUST00000207954 Gm45719 TEC Interval_54427 chr14 69390935 69391552 + 0 NA intron (ENSMUSG00000094526.1, intron 1 of 13) unprocessed_pseudogene-intron (ENSMUSG00000094526.1, intron 1 of 13) 389 ENSMUSG00000094526.1 ENSMUSG00000094526 ENSMUST00000111062 Gm21451 unprocessed_pseudogene Interval_145708 chr7 37567840 37569970 + 0 NA promoter-TSS (ENSMUSG00000043456.17) protein_coding-promoter-TSS (ENSMUSG00000043456.17) -515 ENSMUSG00000043456.17 ENSMUSG00000043456 ENSMUST00000206332 Zfp536 protein_coding Interval_127021 chr5 99649455 99649949 + 0 NA intron (ENSMUSG00000089809.9, intron 1 of 16) protein_coding-intron (ENSMUSG00000089809.9, intron 1 of 1) -5999 ENSMUSG00000087791.1 ENSMUSG00000087791 ENSMUST00000157166 Gm25969 snoRNA Interval_30333 chr11 93677155 93677415 + 0 NA Intergenic Intergenic -17797 ENSMUSG00000080872.1 ENSMUSG00000080872 ENSMUST00000122414 Gm11506 processed_pseudogene Interval_137355 chr6 71645394 71645754 + 0 NA Intergenic Intergenic -3478 ENSMUSG00000108772.1 ENSMUSG00000108772 ENSMUST00000206958 Gm6063 processed_pseudogene Interval_97204 chr2 132226904 132227954 + 0 NA Intergenic Intergenic 20359 ENSMUSG00000027341.10 ENSMUSG00000027341 ENSMUST00000141813 Tmem230 protein_coding Interval_112969 chr4 46519023 46519284 + 0 NA intron (ENSMUSG00000039853.18, intron 3 of 4) protein_coding-intron (ENSMUSG00000039853.18, intron 4 of 5) -16748 ENSMUSG00000085990.1 ENSMUSG00000085990 ENSMUST00000132432 Gm16731 processed_transcript Interval_97692 chr2 142859008 142860857 + 0 NA intron (ENSMUSG00000038844.10, intron 3 of 26) protein_coding-intron (ENSMUSG00000038844.10, intron 3 of 25) 41587 ENSMUSG00000038844.10 ENSMUSG00000038844 ENSMUST00000212106 Kif16b protein_coding Interval_72494 chr17 30188202 30188907 + 0 NA intron (ENSMUSG00000044477.12, intron 2 of 3) protein_coding-intron (ENSMUSG00000044477.12, intron 3 of 4) 11079 ENSMUSG00000117974.1 ENSMUSG00000117974 ENSMUST00000236459 Tuba-rs1 transcribed_processed_pseudogene Interval_145532 chr7 35412457 35412774 + 0 NA intron (ENSMUSG00000023072.14, intron 5 of 19) protein_coding-intron (ENSMUSG00000023072.14, intron 5 of 18) 15485 ENSMUSG00000023072.14 ENSMUSG00000023072 ENSMUST00000150421 Cep89 protein_coding Interval_81645 chr18 62810563 62812135 + 0 NA Intergenic Intergenic -55034 ENSMUSG00000041789.7 ENSMUSG00000041789 ENSMUST00000048109 2700046A07Rik lincRNA Interval_43717 chr13 35756936 35757483 + 0 NA intron (ENSMUSG00000059288.14, intron 1 of 6) protein_coding-intron (ENSMUSG00000059288.14, intron 3 of 9) -5603 ENSMUSG00000059288.14 ENSMUSG00000059288 ENSMUST00000226071 Cdyl protein_coding Interval_40991 chr12 110480717 110481307 + 0 NA intron (ENSMUSG00000113585.1, intron 2 of 2) protein_coding-intron (ENSMUSG00000017843.14, intron 3 of 7) 4604 ENSMUSG00000113585.1 ENSMUSG00000113585 ENSMUST00000222863 Gm19605 processed_transcript Interval_148843 chr7 89232815 89233221 + 0 NA intron (ENSMUSG00000039428.11, intron 3 of 5) protein_coding-intron (ENSMUSG00000039428.11, intron 5 of 14) -15921 ENSMUSG00000109576.1 ENSMUSG00000109576 ENSMUST00000208963 Gm44704 TEC Interval_40790 chr12 108443111 108445473 + 0 NA intron (ENSMUSG00000058070.14, intron 1 of 20) protein_coding-intron (ENSMUSG00000058070.14, intron 1 of 21) -3022 ENSMUSG00000082203.1 ENSMUSG00000082203 ENSMUST00000119205 Gm15636 processed_pseudogene Interval_58010 chr15 25997524 25997922 + 0 NA TTS (ENSMUSG00000052253.6) protein_coding-TTS (ENSMUSG00000052253.6) 13357 ENSMUSG00000052253.6 ENSMUSG00000052253 ENSMUST00000227093 Zfp622 protein_coding Interval_154285 chr8 14032305 14033446 + 0 NA TTS (ENSMUSG00000051978.9) protein_coding-TTS (ENSMUSG00000051978.9) 33935 ENSMUSG00000110058.1 ENSMUSG00000110058 ENSMUST00000210969 Gm5907 lincRNA Interval_70802 chr17 14799256 14800037 + 0 NA Intergenic Intergenic -7642 ENSMUSG00000089053.1 ENSMUSG00000089053 ENSMUST00000158428 Gm23352 snRNA Interval_116740 chr4 117025072 117025320 + 0 NA intron (ENSMUSG00000028683.14, intron 2 of 11) protein_coding-intron (ENSMUSG00000028683.14, intron 1 of 9) -2015 ENSMUSG00000088349.1 ENSMUSG00000088349 ENSMUST00000157724 Gm22335 snRNA Interval_8245 chr1 136698198 136699144 + 0 NA intron (ENSMUSG00000097448.1, intron 1 of 4) lincRNA-intron (ENSMUSG00000097448.1, intron 1 of 4) 1297 ENSMUSG00000092912.1 ENSMUSG00000092912 ENSMUST00000175171 Gm24086 snRNA Interval_98472 chr2 152657119 152658249 + 0 NA Intergenic Intergenic -3354 ENSMUSG00000087148.1 ENSMUSG00000087148 ENSMUST00000139912 1700030C14Rik antisense Interval_15576 chr10 51677310 51678498 + 0 NA promoter-TSS (ENSMUSG00000019900.19) protein_coding-promoter-TSS (ENSMUSG00000019900.19) 10915 ENSMUSG00000112878.1 ENSMUSG00000112878 ENSMUST00000219017 1700042O05Rik lincRNA Interval_167899 chr9 73840737 73841403 + 0 NA intron (ENSMUSG00000062151.13, intron 2 of 32) protein_coding-intron (ENSMUSG00000062151.13, intron 1 of 31) 19108 ENSMUSG00000103202.1 ENSMUSG00000103202 ENSMUST00000192828 Gm37326 TEC Interval_43547 chr13 33004312 33005755 + 0 NA intron (ENSMUSG00000045827.10, intron 2 of 7) protein_coding-intron (ENSMUSG00000045827.10, intron 1 of 6) 1783 ENSMUSG00000045827.10 ENSMUSG00000045827 ENSMUST00000006391 Serpinb9 protein_coding Interval_146160 chr7 44433349 44433962 + 0 NA intron (ENSMUSG00000047085.14, intron 1 of 2) protein_coding-intron (ENSMUSG00000047085.14, intron 1 of 2) -9082 ENSMUSG00000047085.14 ENSMUSG00000047085 ENSMUST00000156093 Lrrc4b protein_coding Interval_86262 chr19 38232285 38233035 + 0 NA Intergenic Intergenic -8522 ENSMUSG00000054237.6 ENSMUSG00000054237 ENSMUST00000238154 Fra10ac1 protein_coding Interval_171303 chr9 116233144 116233608 + 0 NA intron (ENSMUSG00000111324.1, intron 3 of 3) lincRNA-intron (ENSMUSG00000111324.1, intron 3 of 3) 14574 ENSMUSG00000111324.1 ENSMUSG00000111324 ENSMUST00000217302 Gm31410 lincRNA Interval_162144 chr8 125498423 125499358 + 0 NA intron (ENSMUSG00000001995.9, intron 2 of 22) protein_coding-intron (ENSMUSG00000001995.9, intron 2 of 21) 70918 ENSMUSG00000001995.9 ENSMUSG00000001995 ENSMUST00000212604 Sipa1l2 protein_coding Interval_51212 chr14 25061079 25061349 + 0 NA Intergenic Intergenic 13230 ENSMUSG00000114924.1 ENSMUSG00000114924 ENSMUST00000224815 Gm38408 lincRNA Interval_45927 chr13 59357639 59358094 + 0 NA Intergenic Intergenic -27623 ENSMUSG00000114240.1 ENSMUSG00000114240 ENSMUST00000224237 Gm47360 lincRNA Interval_93688 chr2 75860846 75862288 + 0 NA intron (ENSMUSG00000042410.16, intron 7 of 19) protein_coding-intron (ENSMUSG00000042410.16, intron 7 of 19) -38774 ENSMUSG00000082187.1 ENSMUSG00000082187 ENSMUST00000120947 Gm13670 processed_pseudogene Interval_95478 chr2 109941714 109943370 + 0 NA intron (ENSMUSG00000050199.13, intron 1 of 16) protein_coding-intron (ENSMUSG00000050199.13, intron 1 of 17) -29223 ENSMUSG00000063751.6 ENSMUSG00000063751 ENSMUST00000146110 Platr8 processed_transcript Interval_17161 chr10 73039479 73040058 + 0 NA intron (ENSMUSG00000111994.1, intron 1 of 4) lincRNA-intron (ENSMUSG00000111994.1, intron 1 of 2) 46937 ENSMUSG00000111994.1 ENSMUSG00000111994 ENSMUST00000219920 A330049N07Rik lincRNA Interval_89756 chr2 25240595 25242812 + 0 NA intron (ENSMUSG00000036731.7, intron 1 of 1) protein_coding-intron (ENSMUSG00000036731.7, intron 1 of 1) -1226 ENSMUSG00000044628.5 ENSMUSG00000044628 ENSMUST00000060818 Rnf208 protein_coding Interval_74157 chr17 46838508 46838959 + 0 NA intron (ENSMUSG00000036568.7, intron 1 of 4) protein_coding-intron (ENSMUSG00000036568.7, intron 1 of 4) -6419 ENSMUSG00000036568.7 ENSMUSG00000036568 ENSMUST00000233455 Bicral protein_coding Interval_154699 chr8 22668330 22669984 + 0 NA promoter-TSS (ENSMUSG00000031537.15) protein_coding-promoter-TSS (ENSMUSG00000031537.15) -15722 ENSMUSG00000031536.6 ENSMUSG00000031536 ENSMUST00000210950 Polb protein_coding Interval_59229 chr15 49192261 49193035 + 0 NA Intergenic Intergenic -1689 ENSMUSG00000115775.1 ENSMUSG00000115775 ENSMUST00000228245 Gm41318 lincRNA Interval_151485 chr7 123017140 123018428 + 0 NA Intergenic Intergenic 7672 ENSMUSG00000108396.1 ENSMUSG00000108396 ENSMUST00000205729 Gm6905 processed_pseudogene Interval_166537 chr9 60712614 60713706 + 0 NA exon (ENSMUSG00000034839.5, exon 1 of 3) protein_coding-exon (ENSMUSG00000034839.5, exon 1 of 3) 171 ENSMUSG00000034839.5 ENSMUSG00000034839 ENSMUST00000038407 Larp6 protein_coding Interval_50010 chr13 119689988 119691046 + 0 NA promoter-TSS (ENSMUSG00000093930.2) protein_coding-promoter-TSS (ENSMUSG00000093930.2) 55 ENSMUSG00000093930.2 ENSMUSG00000093930 ENSMUST00000224188 Hmgcs1 protein_coding Interval_164601 chr9 39935967 39936586 + 0 NA Intergenic Intergenic -1225 ENSMUSG00000051493.7 ENSMUSG00000051493 ENSMUST00000062833 Olfr974 protein_coding Interval_34026 chr11 120086277 120087401 + 0 NA promoter-TSS (ENSMUSG00000039781.14) protein_coding-promoter-TSS (ENSMUSG00000039781.14) -12 ENSMUSG00000039781.14 ENSMUSG00000039781 ENSMUST00000144128 Cep131 protein_coding Interval_138869 chr6 92762504 92762711 + 0 NA Intergenic Intergenic -65025 ENSMUSG00000048636.7 ENSMUSG00000048636 ENSMUST00000133858 A730049H05Rik protein_coding Interval_7416 chr1 131146009 131146458 + 0 NA Intergenic Intergenic -7988 ENSMUSG00000016526.8 ENSMUSG00000016526 ENSMUST00000189756 Dyrk3 protein_coding Interval_4034 chr1 66743522 66743835 + 0 NA intron (ENSMUSG00000026004.15, intron 5 of 13) protein_coding-intron (ENSMUSG00000026004.15, intron 6 of 13) 25053 ENSMUSG00000102559.1 ENSMUSG00000102559 ENSMUST00000195411 Gm37570 TEC Interval_169172 chr9 95052246 95052958 + 0 NA intron (ENSMUSG00000031129.9, intron 11 of 15) protein_coding-intron (ENSMUSG00000031129.9, intron 11 of 15) -59918 ENSMUSG00000111087.1 ENSMUSG00000111087 ENSMUST00000214362 Gm47168 processed_pseudogene Interval_131397 chr5 136935792 136936767 + 0 NA exon (ENSMUSG00000097908.7, exon 4 of 4) lincRNA-exon (ENSMUSG00000097908.7, exon 4 of 4) 17098 ENSMUSG00000097908.7 ENSMUSG00000097908 ENSMUST00000181190 4933404O12Rik lincRNA Interval_22508 chr11 11239136 11239891 + 0 NA intron (ENSMUSG00000050830.17, intron 3 of 4) protein_coding-intron (ENSMUSG00000050830.17, intron 2 of 3) -72920 ENSMUSG00000082875.1 ENSMUSG00000082875 ENSMUST00000117333 Gm12598 processed_pseudogene Interval_91361 chr2 38223769 38223943 + 0 NA intron (ENSMUSG00000035392.17, intron 2 of 5) protein_coding-intron (ENSMUSG00000035392.17, intron 2 of 21) 1266 ENSMUSG00000105046.1 ENSMUSG00000105046 ENSMUST00000200061 Gm44455 miRNA Interval_160200 chr8 107095709 107096884 + 0 NA promoter-TSS (ENSMUSG00000031921.17) protein_coding-promoter-TSS (ENSMUSG00000031921.17) -190 ENSMUSG00000098671.1 ENSMUSG00000098671 ENSMUST00000184187 Mir7075 miRNA Interval_69305 chr16 92070568 92071201 + 0 NA intron (ENSMUSG00000039680.10, intron 1 of 2) protein_coding-intron (ENSMUSG00000039680.10, intron 1 of 2) -7178 ENSMUSG00000089774.2 ENSMUSG00000089774 ENSMUST00000131098 Slc5a3 protein_coding Interval_20177 chr10 115436175 115436808 + 0 NA Intergenic Intergenic 7984 ENSMUSG00000034163.10 ENSMUSG00000034163 ENSMUST00000141246 Zfc3h1 protein_coding Interval_128288 chr5 112297288 112297691 + 0 NA intron (ENSMUSG00000029344.15, intron 1 of 2) protein_coding-intron (ENSMUSG00000029344.15, intron 1 of 6) 20782 ENSMUSG00000029344.15 ENSMUSG00000029344 ENSMUST00000139482 Tpst2 protein_coding Interval_149409 chr7 98204330 98204726 + 0 NA Intergenic Intergenic -5047 ENSMUSG00000074004.3 ENSMUSG00000074004 ENSMUST00000098278 B3gnt6 protein_coding Interval_118738 chr4 133463947 133464762 + 0 NA Intergenic Intergenic -15778 ENSMUSG00000046694.6 ENSMUSG00000046694 ENSMUST00000051676 Tent5b protein_coding Interval_92815 chr2 65848105 65849130 + 0 NA intron (ENSMUSG00000044647.16, intron 1 of 4) protein_coding-intron (ENSMUSG00000044647.16, intron 1 of 5) 12002 ENSMUSG00000052865.5 ENSMUSG00000052865 ENSMUST00000155722 Gm13619 antisense Interval_105231 chr3 84022731 84023289 + 0 NA intron (ENSMUSG00000033767.14, intron 3 of 33) protein_coding-intron (ENSMUSG00000033767.14, intron 3 of 33) 40442 ENSMUSG00000103261.1 ENSMUSG00000103261 ENSMUST00000192340 Gm36981 TEC Interval_130203 chr5 124908784 124909124 + 0 NA Intergenic Intergenic 34802 ENSMUSG00000079215.8 ENSMUSG00000079215 ENSMUST00000134473 Zfp664 protein_coding Interval_992 chr1 13675694 13675967 + 0 NA intron (ENSMUSG00000067813.3, intron 2 of 3) protein_coding-intron (ENSMUSG00000067813.3, intron 2 of 3) 7059 ENSMUSG00000067813.3 ENSMUSG00000067813 ENSMUST00000088542 Xkr9 protein_coding Interval_121744 chr5 6393591 6393799 + 0 NA Intergenic Intergenic -16743 ENSMUSG00000088380.1 ENSMUSG00000088380 ENSMUST00000157755 Gm24686 snRNA Interval_162410 chr8 128235234 128237243 + 0 NA Intergenic Intergenic 41987 ENSMUSG00000099326.1 ENSMUSG00000099326 ENSMUST00000184910 Mir21c miRNA Interval_18715 chr10 89634652 89635592 + 0 NA Intergenic Intergenic -35307 ENSMUSG00000019935.16 ENSMUSG00000019935 ENSMUST00000105295 Slc17a8 protein_coding Interval_143395 chr7 6362269 6363529 + 0 NA promoter-TSS (ENSMUSG00000055150.15) protein_coding-promoter-TSS (ENSMUSG00000055150.15) -433 ENSMUSG00000055150.15 ENSMUSG00000055150 ENSMUST00000108559 Zfp78 protein_coding Interval_118411 chr4 131241581 131243101 + 0 NA Intergenic Intergenic 3064 ENSMUSG00000088041.1 ENSMUSG00000088041 ENSMUST00000157416 Gm25261 snoRNA Interval_127224 chr5 101647438 101648980 + 0 NA Intergenic Intergenic 16787 ENSMUSG00000035187.10 ENSMUSG00000035187 ENSMUST00000044125 Nkx6-1 protein_coding Interval_12379 chr1 192783844 192784670 + 0 NA Intergenic Intergenic -13265 ENSMUSG00000037375.16 ENSMUSG00000037375 ENSMUST00000192946 Hhat protein_coding Interval_2951 chr1 51572505 51573452 + 0 NA intron (ENSMUSG00000099413.1, intron 3 of 3) lincRNA-intron (ENSMUSG00000099413.1, intron 3 of 3) -43609 ENSMUSG00000103424.1 ENSMUSG00000103424 ENSMUST00000194442 Gm37535 TEC Interval_151282 chr7 120653122 120653319 + 0 NA intron (ENSMUSG00000030884.12, intron 1 of 3) protein_coding-intron (ENSMUSG00000030884.12, intron 10 of 13) -17076 ENSMUSG00000108935.1 ENSMUSG00000108935 ENSMUST00000208075 4930588G17Rik antisense Interval_68857 chr16 87623909 87626430 + 0 NA Intergenic Intergenic -4049 ENSMUSG00000064670.1 ENSMUSG00000064670 ENSMUST00000082736 Gm22808 snRNA Interval_79894 chr18 35783973 35784247 + 0 NA intron (ENSMUSG00000091896.8, intron 1 of 2) protein_coding-intron (ENSMUSG00000091896.8, intron 1 of 7) 12522 ENSMUSG00000091896.8 ENSMUSG00000091896 ENSMUST00000237482 Ube2d2a protein_coding Interval_87410 chr19 49258035 49258718 + 0 NA Intergenic Intergenic 167703 ENSMUSG00000118111.1 ENSMUSG00000118111 ENSMUST00000236912 Gm50442 lincRNA Interval_40009 chr12 100468148 100468634 + 0 NA TTS (ENSMUSG00000113895.1) antisense-TTS (ENSMUSG00000113895.1) -2093 ENSMUSG00000033530.8 ENSMUSG00000033530 ENSMUST00000220614 Ttc7b protein_coding Interval_163051 chr9 14826540 14826862 + 0 NA intron (ENSMUSG00000031928.15, intron 15 of 18) protein_coding-intron (ENSMUSG00000031928.15, intron 16 of 19) -18661 ENSMUSG00000111817.1 ENSMUSG00000111817 ENSMUST00000216810 Gm47154 processed_pseudogene Interval_94462 chr2 91395968 91396863 + 0 NA intron (ENSMUSG00000040591.18, intron 1 of 7) protein_coding-intron (ENSMUSG00000040591.18, intron 2 of 8) 10721 ENSMUSG00000080507.2 ENSMUSG00000080507 ENSMUST00000116857 Gm22071 miRNA Interval_165112 chr9 44624597 44625062 + 0 NA intron (ENSMUSG00000032097.10, intron 6 of 13) protein_coding-intron (ENSMUSG00000032097.10, intron 6 of 13) 6576 ENSMUSG00000111264.1 ENSMUSG00000111264 ENSMUST00000215131 E030022I16Rik TEC Interval_13385 chr10 17633301 17634493 + 0 NA intron (ENSMUSG00000112629.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000112629.1, intron 1 of 2) 24616 ENSMUSG00000112629.1 ENSMUSG00000112629 ENSMUST00000219966 Gm47771 lincRNA Interval_49361 chr13 111461165 111461638 + 0 NA intron (ENSMUSG00000116016.1, intron 2 of 7) protein_coding-intron (ENSMUSG00000032745.18, intron 3 of 12) -7978 ENSMUSG00000032745.18 ENSMUSG00000032745 ENSMUST00000129638 Gpbp1 protein_coding Interval_169722 chr9 100686342 100686716 + 0 NA intron (ENSMUSG00000037286.15, intron 2 of 6) protein_coding-intron (ENSMUSG00000037286.15, intron 1 of 32) -16684 ENSMUSG00000104272.1 ENSMUSG00000104272 ENSMUST00000195122 Gm38297 TEC Interval_156503 chr8 48775046 48777206 + 0 NA intron (ENSMUSG00000031561.16, intron 1 of 2) protein_coding-intron (ENSMUSG00000031561.16, intron 1 of 2) -67596 ENSMUSG00000100706.6 ENSMUSG00000100706 ENSMUST00000188936 Gm19744 processed_transcript Interval_491 chr1 6377338 6377620 + 0 NA intron (ENSMUSG00000087247.3, intron 1 of 4) protein_coding-intron (ENSMUSG00000087247.3, intron 1 of 4) -2915 ENSMUSG00000103355.1 ENSMUSG00000103355 ENSMUST00000193588 Gm2147 processed_pseudogene Interval_19178 chr10 95315496 95316036 + 0 NA promoter-TSS (ENSMUSG00000112744.1) TEC-promoter-TSS (ENSMUSG00000112744.1) -913 ENSMUSG00000112744.1 ENSMUSG00000112744 ENSMUST00000219461 Gm48880 TEC Interval_133380 chr6 4417359 4417594 + 0 NA Intergenic Intergenic 26556 ENSMUSG00000107450.1 ENSMUSG00000107450 ENSMUST00000204280 Gm2522 processed_pseudogene Interval_73287 chr17 35981774 35982123 + 0 NA TTS (ENSMUSG00000024429.9) protein_coding-TTS (ENSMUSG00000024429.9) 1560 ENSMUSG00000024429.9 ENSMUSG00000024429 ENSMUST00000174275 Gnl1 protein_coding Interval_110576 chr4 4130744 4131752 + 0 NA Intergenic Intergenic -7073 ENSMUSG00000085996.1 ENSMUSG00000085996 ENSMUST00000131498 A830012C17Rik processed_transcript Interval_37477 chr12 69220829 69221202 + 0 NA intron (ENSMUSG00000020974.6, intron 5 of 18) protein_coding-intron (ENSMUSG00000020974.6, intron 5 of 18) -6911 ENSMUSG00000113190.1 ENSMUSG00000113190 ENSMUST00000220745 Gm47545 antisense Interval_138996 chr6 94103917 94104256 + 0 NA intron (ENSMUSG00000045095.16, intron 1 of 24) protein_coding-intron (ENSMUSG00000045095.16, intron 1 of 21) -191582 ENSMUSG00000045095.16 ENSMUSG00000045095 ENSMUST00000203034 Magi1 protein_coding Interval_123481 chr5 32806328 32806609 + 0 NA intron (ENSMUSG00000054280.14, intron 3 of 4) protein_coding-intron (ENSMUSG00000054280.14, intron 9 of 10) -5503 ENSMUSG00000105429.1 ENSMUSG00000105429 ENSMUST00000198236 Gm43692 TEC Interval_49356 chr13 111440351 111440873 + 0 NA TTS (ENSMUSG00000032745.18) protein_coding-TTS (ENSMUSG00000032745.18) 12811 ENSMUSG00000032745.18 ENSMUSG00000032745 ENSMUST00000129638 Gpbp1 protein_coding Interval_107109 chr3 103631487 103631897 + 0 NA TTS (ENSMUSG00000027849.19) protein_coding-TTS (ENSMUSG00000027849.19) 14376 ENSMUSG00000087119.4 ENSMUSG00000087119 ENSMUST00000117271 Atg4a-ps protein_coding Interval_159429 chr8 94571949 94572260 + 0 NA Intergenic Intergenic 16590 ENSMUSG00000034361.10 ENSMUSG00000034361 ENSMUST00000156377 Cpne2 protein_coding Interval_138847 chr6 92522068 92522385 + 0 NA intron (ENSMUSG00000030020.13, intron 2 of 8) protein_coding-intron (ENSMUSG00000030020.13, intron 2 of 8) -39551 ENSMUSG00000098130.1 ENSMUSG00000098130 ENSMUST00000182175 Gm17797 processed_pseudogene Interval_130196 chr5 124869162 124869614 + 0 NA intron (ENSMUSG00000079215.8, intron 2 of 3) protein_coding-intron (ENSMUSG00000079215.8, intron 2 of 3) -4764 ENSMUSG00000079215.8 ENSMUSG00000079215 ENSMUST00000134473 Zfp664 protein_coding Interval_101934 chr3 12341173 12342008 + 0 NA Intergenic Intergenic 43019 ENSMUSG00000103339.1 ENSMUSG00000103339 ENSMUST00000191859 Gm37996 processed_pseudogene Interval_70948 chr17 16668955 16670231 + 0 NA exon (ENSMUSG00000116864.1, exon 1 of 1) processed_pseudogene-exon (ENSMUSG00000116864.1, exon 1 of 1) 593 ENSMUSG00000116864.1 ENSMUSG00000116864 ENSMUST00000231447 Gm3320 processed_pseudogene Interval_132991 chr5 149143438 149144316 + 0 NA promoter-TSS (ENSMUSG00000107388.1) lincRNA-promoter-TSS (ENSMUSG00000107388.1) -386 ENSMUSG00000107388.1 ENSMUSG00000107388 ENSMUST00000201604 Gm42788 lincRNA Interval_15437 chr10 46615269 46615662 + 0 NA Intergenic Intergenic 43173 ENSMUSG00000077361.1 ENSMUSG00000077361 ENSMUST00000104173 Gm23481 snoRNA Interval_163486 chr9 21677710 21678072 + 0 NA promoter-TSS (ENSMUSG00000099192.1) misc_RNA-promoter-TSS (ENSMUSG00000099192.1) -22 ENSMUSG00000099192.1 ENSMUSG00000099192 ENSMUST00000184017 Gm27373 misc_RNA Interval_83098 chr18 81244072 81244282 + 0 NA Intergenic Intergenic -8111 ENSMUSG00000097181.1 ENSMUSG00000097181 ENSMUST00000181204 4930594M17Rik lincRNA Interval_94693 chr2 93418483 93419773 + 0 NA TTS (ENSMUSG00000027215.13) protein_coding-TTS (ENSMUSG00000027215.13) 2879 ENSMUSG00000099238.1 ENSMUSG00000099238 ENSMUST00000184769 Mir7001 miRNA Interval_48425 chr13 98932973 98933903 + 0 NA Intergenic Intergenic 12478 ENSMUSG00000114569.1 ENSMUSG00000114569 ENSMUST00000223733 Gm35215 lincRNA Interval_32949 chr11 113318846 113319592 + 0 NA intron (ENSMUSG00000041654.15, intron 6 of 9) protein_coding-intron (ENSMUSG00000041654.15, intron 7 of 10) -109550 ENSMUSG00000085421.1 ENSMUSG00000085421 ENSMUST00000130373 4732490B19Rik lincRNA Interval_53772 chr14 61634887 61635066 + 0 NA TTS (ENSMUSG00000097589.9) processed_transcript-TTS (ENSMUSG00000097589.9) -2866 ENSMUSG00000093007.1 ENSMUSG00000093007 ENSMUST00000175266 Mir15a miRNA Interval_30721 chr11 96116509 96117007 + 0 NA Intergenic Intergenic -4796 ENSMUSG00000006056.13 ENSMUSG00000006056 ENSMUST00000097162 Calcoco2 protein_coding Interval_103494 chr3 44903642 44904063 + 0 NA Intergenic Intergenic -79348 ENSMUSG00000088535.1 ENSMUSG00000088535 ENSMUST00000157910 Gm24997 snRNA Interval_83656 chr19 3524307 3525072 + 0 NA intron (ENSMUSG00000024908.15, intron 3 of 12) protein_coding-intron (ENSMUSG00000024908.15, intron 3 of 22) -2415 ENSMUSG00000114302.1 ENSMUSG00000114302 ENSMUST00000223977 Gm48683 antisense Interval_141527 chr6 128880333 128880580 + 0 NA intron (ENSMUSG00000090164.8, intron 2 of 2) protein_coding-intron (ENSMUSG00000090164.8, intron 2 of 2) -3396 ENSMUSG00000107733.1 ENSMUSG00000107733 ENSMUST00000203621 Gm8774 processed_pseudogene Interval_102175 chr3 19207253 19207491 + 0 NA intron (ENSMUSG00000027601.13, intron 3 of 3) protein_coding-intron (ENSMUSG00000027601.13, intron 3 of 8) 19098 ENSMUSG00000027601.13 ENSMUSG00000027601 ENSMUST00000131053 Mtfr1 protein_coding Interval_105921 chr3 90102218 90103433 + 0 NA Intergenic Intergenic -1309 ENSMUSG00000027939.11 ENSMUSG00000027939 ENSMUST00000200410 Nup210l protein_coding Interval_171511 chr9 118960095 118960440 + 0 NA intron (ENSMUSG00000047409.13, intron 1 of 5) protein_coding-intron (ENSMUSG00000047409.13, intron 1 of 7) 30400 ENSMUSG00000047409.13 ENSMUSG00000047409 ENSMUST00000174132 Ctdspl protein_coding Interval_108345 chr3 124600086 124600316 + 0 NA Intergenic Intergenic -11044 ENSMUSG00000106009.1 ENSMUSG00000106009 ENSMUST00000196790 Gm9379 processed_pseudogene Interval_65199 chr16 20473790 20475595 + 0 NA Intergenic Intergenic -14096 ENSMUSG00000093381.1 ENSMUSG00000093381 ENSMUST00000177503 Gm20615 unprocessed_pseudogene Interval_166555 chr9 60865689 60866496 + 0 NA promoter-TSS (ENSMUSG00000034485.10) protein_coding-promoter-TSS (ENSMUSG00000034485.10) -27893 ENSMUSG00000052143.8 ENSMUSG00000052143 ENSMUST00000063858 Gm9869 antisense Interval_166702 chr9 62121800 62123232 + 0 NA promoter-TSS (ENSMUSG00000092696.1) miRNA-promoter-TSS (ENSMUSG00000092696.1) 78 ENSMUSG00000092696.1 ENSMUSG00000092696 ENSMUST00000174955 Mir5133 miRNA Interval_52861 chr14 51176117 51176925 + 0 NA Intergenic Intergenic -8096 ENSMUSG00000115136.1 ENSMUSG00000115136 ENSMUST00000228894 Ear-ps1 unprocessed_pseudogene Interval_81381 chr18 59975769 59977397 + 0 NA Intergenic Intergenic 79029 ENSMUSG00000117999.1 ENSMUSG00000117999 ENSMUST00000237612 Gm18217 processed_pseudogene Interval_19376 chr10 98589614 98590460 + 0 NA Intergenic Intergenic 52555 ENSMUSG00000112874.1 ENSMUSG00000112874 ENSMUST00000220028 Gm34297 lincRNA Interval_48512 chr13 99592653 99593400 + 0 NA Intergenic Intergenic 31584 ENSMUSG00000114578.1 ENSMUSG00000114578 ENSMUST00000224215 Gm47158 processed_pseudogene Interval_35998 chr12 33188037 33188364 + 0 NA intron (ENSMUSG00000020564.17, intron 2 of 12) protein_coding-intron (ENSMUSG00000020564.17, intron 1 of 2) -40604 ENSMUSG00000052125.16 ENSMUSG00000052125 ENSMUST00000172344 F730043M19Rik bidirectional_promoter_lncRNA Interval_23551 chr11 23313885 23314657 + 0 NA intron (ENSMUSG00000056342.16, intron 1 of 79) protein_coding-intron (ENSMUSG00000056342.16, intron 1 of 79) 7376 ENSMUSG00000056342.16 ENSMUSG00000056342 ENSMUST00000125701 Usp34 protein_coding Interval_41558 chr12 116268960 116269141 + 0 NA Intergenic Intergenic -6064 ENSMUSG00000042050.8 ENSMUSG00000042050 ENSMUST00000221029 Wdr60 protein_coding Interval_168436 chr9 80332205 80332796 + 0 NA intron (ENSMUSG00000032343.15, intron 14 of 16) protein_coding-intron (ENSMUSG00000032343.15, intron 13 of 15) -67050 ENSMUSG00000099016.1 ENSMUSG00000099016 ENSMUST00000183413 Gm27227 antisense Interval_22976 chr11 18297057 18297695 + 0 NA Intergenic Intergenic 30295 ENSMUSG00000081302.1 ENSMUSG00000081302 ENSMUST00000119030 Gm12020 processed_pseudogene Interval_123079 chr5 29452697 29453025 + 0 NA exon (ENSMUSG00000001569.10, exon 11 of 11) protein_coding-exon (ENSMUSG00000001569.10, exon 11 of 11) 11543 ENSMUSG00000001569.10 ENSMUSG00000001569 ENSMUST00000146347 Nom1 protein_coding Interval_73740 chr17 43100541 43100810 + 0 NA Intergenic Intergenic 57591 ENSMUSG00000117011.1 ENSMUSG00000117011 ENSMUST00000232795 E130008D07Rik lincRNA Interval_134568 chr6 29649134 29650284 + 0 NA Intergenic Intergenic -58319 ENSMUSG00000001763.14 ENSMUSG00000001763 ENSMUST00000137925 Tspan33 protein_coding Interval_127572 chr5 105472895 105473179 + 0 NA intron (ENSMUSG00000070639.5, intron 2 of 4) protein_coding-intron (ENSMUSG00000070639.5, intron 2 of 4) -22433 ENSMUSG00000105826.1 ENSMUSG00000105826 ENSMUST00000196534 Gm42141 TEC Interval_40808 chr12 108536076 108537427 + 0 NA TTS (ENSMUSG00000097788.2) antisense-TTS (ENSMUSG00000097788.2) 18713 ENSMUSG00000097788.2 ENSMUSG00000097788 ENSMUST00000220796 Gm16596 antisense Interval_7300 chr1 128590792 128593821 + 0 NA promoter-TSS (ENSMUSG00000045382.6) protein_coding-promoter-TSS (ENSMUSG00000045382.6) -13 ENSMUSG00000045382.6 ENSMUSG00000045382 ENSMUST00000142893 Cxcr4 protein_coding Interval_167120 chr9 65489148 65489381 + 0 NA TTS (ENSMUSG00000032388.7) protein_coding-TTS (ENSMUSG00000032388.7) 20475 ENSMUSG00000032388.7 ENSMUSG00000032388 ENSMUST00000216992 Spg21 protein_coding Interval_463 chr1 5904756 5905281 + 0 NA Intergenic Intergenic 12380 ENSMUSG00000033774.4 ENSMUSG00000033774 ENSMUST00000044180 Npbwr1 protein_coding Interval_65181 chr16 20384034 20384912 + 0 NA intron (ENSMUSG00000022822.16, intron 5 of 6) protein_coding-intron (ENSMUSG00000022822.16, intron 12 of 29) 14475 ENSMUSG00000022822.16 ENSMUSG00000022822 ENSMUST00000231522 Abcc5 protein_coding Interval_82653 chr18 75654742 75655590 + 0 NA intron (ENSMUSG00000052928.9, intron 1 of 11) protein_coding-intron (ENSMUSG00000052928.9, intron 1 of 11) -17893 ENSMUSG00000052928.9 ENSMUSG00000052928 ENSMUST00000235147 Ctif protein_coding Interval_174823 chrX 168140566 168141759 + 0 NA intron (ENSMUSG00000049176.16, intron 3 of 19) protein_coding-intron (ENSMUSG00000049176.16, intron 3 of 19) -16872 ENSMUSG00000049176.16 ENSMUSG00000049176 ENSMUST00000239138 Frmpd4 protein_coding Interval_155882 chr8 40604855 40605332 + 0 NA intron (ENSMUSG00000039431.16, intron 3 of 11) protein_coding-intron (ENSMUSG00000039431.16, intron 3 of 14) 29704 ENSMUSG00000039431.16 ENSMUSG00000039431 ENSMUST00000174537 Mtmr7 protein_coding Interval_84602 chr19 14258734 14258956 + 0 NA Intergenic Intergenic -240474 ENSMUSG00000098074.1 ENSMUSG00000098074 ENSMUST00000182766 Gm26993 processed_pseudogene Interval_98824 chr2 155336933 155337672 + 0 NA intron (ENSMUSG00000038383.16, intron 2 of 11) protein_coding-intron (ENSMUSG00000038383.16, intron 2 of 11) -19515 ENSMUSG00000076216.1 ENSMUSG00000076216 ENSMUST00000102261 Mir695 miRNA Interval_18001 chr10 81307234 81307483 + 0 NA intron (ENSMUSG00000034902.17, intron 5 of 16) protein_coding-intron (ENSMUSG00000034902.17, intron 5 of 18) -4441 ENSMUSG00000090230.1 ENSMUSG00000090230 ENSMUST00000163009 Gm16315 antisense Interval_102528 chr3 27507453 27507806 + 0 NA intron (ENSMUSG00000039286.12, intron 8 of 26) protein_coding-intron (ENSMUSG00000039286.12, intron 7 of 25) -39012 ENSMUSG00000106625.1 ENSMUSG00000106625 ENSMUST00000198723 Gm43344 TEC Interval_166458 chr9 59655926 59657581 + 0 NA promoter-TSS (ENSMUSG00000032294.17) protein_coding-promoter-TSS (ENSMUSG00000032294.17) 94 ENSMUSG00000032294.17 ENSMUSG00000032294 ENSMUST00000213220 Pkm protein_coding Interval_48110 chr13 96156115 96156302 + 0 NA Intergenic Intergenic 22839 ENSMUSG00000100475.1 ENSMUSG00000100475 ENSMUST00000188138 Gm29543 lincRNA Interval_53072 chr14 54233247 54234724 + 0 NA Intergenic Intergenic 13464 ENSMUSG00000076928.5 ENSMUSG00000076928 ENSMUST00000198398 Trac TR_C_gene Interval_112932 chr4 46168045 46168311 + 0 NA intron (ENSMUSG00000028330.8, intron 3 of 7) protein_coding-intron (ENSMUSG00000028330.8, intron 18 of 22) 2982 ENSMUSG00000028330.8 ENSMUSG00000028330 ENSMUST00000133286 Ncbp1 protein_coding Interval_71569 chr17 24606735 24607178 + 0 NA promoter-TSS (ENSMUSG00000002496.10) protein_coding-promoter-TSS (ENSMUSG00000002496.10) -446 ENSMUSG00000002496.10 ENSMUSG00000002496 ENSMUST00000227509 Tsc2 protein_coding Interval_45176 chr13 52948067 52949884 + 0 NA Intergenic Intergenic 15757 ENSMUSG00000065771.1 ENSMUSG00000065771 ENSMUST00000083837 n-R5s54 rRNA Interval_50145 chr14 8274452 8275801 + 0 NA Intergenic Intergenic -16972 ENSMUSG00000021751.13 ENSMUSG00000021751 ENSMUST00000171175 Acox2 protein_coding Interval_151458 chr7 122755003 122755214 + 0 NA intron (ENSMUSG00000066189.9, intron 2 of 2) protein_coding-intron (ENSMUSG00000066189.9, intron 2 of 3) -53190 ENSMUSG00000108718.1 ENSMUSG00000108718 ENSMUST00000206285 Gm44749 TEC Interval_93640 chr2 75434901 75435514 + 0 NA promoter-TSS (ENSMUSG00000087504.1) lincRNA-promoter-TSS (ENSMUSG00000087504.1) -850 ENSMUSG00000087504.1 ENSMUSG00000087504 ENSMUST00000135329 Gm13658 lincRNA Interval_73529 chr17 39363081 39363957 + 0 NA Intergenic Intergenic 13889 ENSMUSG00000117267.1 ENSMUSG00000117267 ENSMUST00000232809 Gm49830 unprocessed_pseudogene Interval_170998 chr9 113615744 113616103 + 0 NA Intergenic Intergenic 26131 ENSMUSG00000111364.1 ENSMUSG00000111364 ENSMUST00000213455 Gm36745 lincRNA Interval_102429 chr3 25498190 25498463 + 0 NA intron (ENSMUSG00000063887.13, intron 5 of 7) protein_coding-intron (ENSMUSG00000063887.13, intron 3 of 5) -47694 ENSMUSG00000087945.1 ENSMUSG00000087945 ENSMUST00000157320 Gm24250 rRNA Interval_39338 chr12 86805622 86806422 + 0 NA Intergenic Intergenic -3935 ENSMUSG00000088403.1 ENSMUSG00000088403 ENSMUST00000157778 Gm25888 misc_RNA Interval_15738 chr10 55469933 55470136 + 0 NA Intergenic Intergenic 345672 ENSMUSG00000112755.1 ENSMUSG00000112755 ENSMUST00000219650 Gm46190 processed_pseudogene Interval_77454 chr17 88953482 88954773 + 0 NA Intergenic Intergenic -97505 ENSMUSG00000117566.1 ENSMUSG00000117566 ENSMUST00000234561 Gm9407 processed_pseudogene Interval_128829 chr5 115491912 115492265 + 0 NA exon (ENSMUSG00000081282.2, exon 1 of 1) processed_pseudogene-exon (ENSMUSG00000081282.2, exon 1 of 1) 367 ENSMUSG00000081282.2 ENSMUSG00000081282 ENSMUST00000121159 Gm13836 processed_pseudogene Interval_136332 chr6 53181892 53182628 + 0 NA Intergenic Intergenic -10525 ENSMUSG00000108028.1 ENSMUSG00000108028 ENSMUST00000203654 Gm8143 processed_pseudogene Interval_147154 chr7 63902905 63903268 + 0 NA intron (ENSMUSG00000052040.10, intron 1 of 1) protein_coding-intron (ENSMUSG00000052040.10, intron 1 of 1) 5112 ENSMUSG00000098708.7 ENSMUSG00000098708 ENSMUST00000184360 Gm27252 processed_transcript Interval_167179 chr9 65951453 65951897 + 0 NA TTS (ENSMUSG00000077385.1) snoRNA-TTS (ENSMUSG00000077385.1) 770 ENSMUSG00000077385.1 ENSMUSG00000077385 ENSMUST00000104197 Gm22657 snoRNA Interval_136904 chr6 63924640 63924931 + 0 NA intron (ENSMUSG00000071424.10, intron 3 of 8) protein_coding-intron (ENSMUSG00000071424.10, intron 3 of 15) 116772 ENSMUSG00000107864.1 ENSMUSG00000107864 ENSMUST00000203666 Gm44072 antisense Interval_24104 chr11 30289222 30290188 + 0 NA Intergenic Intergenic -21530 ENSMUSG00000020315.18 ENSMUSG00000020315 ENSMUST00000149117 Sptbn1 protein_coding Interval_75585 chr17 68881614 68882235 + 0 NA Intergenic Intergenic 37899 ENSMUSG00000117093.1 ENSMUSG00000117093 ENSMUST00000232893 Gm49949 TEC Interval_109999 chr3 152405988 152406658 + 0 NA intron (ENSMUSG00000039068.16, intron 1 of 13) protein_coding-intron (ENSMUSG00000039068.16, intron 1 of 13) 10191 ENSMUSG00000039068.16 ENSMUSG00000039068 ENSMUST00000135044 Zzz3 protein_coding Interval_81242 chr18 56714261 56714781 + 0 NA intron (ENSMUSG00000024590.8, intron 1 of 10) protein_coding-intron (ENSMUSG00000024590.8, intron 1 of 10) -13920 ENSMUSG00000024590.8 ENSMUSG00000024590 ENSMUST00000128651 Lmnb1 protein_coding Interval_81765 chr18 64503243 64503527 + 0 NA TTS (ENSMUSG00000024587.10) protein_coding-TTS (ENSMUSG00000024587.10) 8492 ENSMUSG00000024587.10 ENSMUSG00000024587 ENSMUST00000237027 Nars protein_coding Interval_30096 chr11 89152628 89154564 + 0 NA Intergenic Intergenic -16830 ENSMUSG00000089485.1 ENSMUSG00000089485 ENSMUST00000158860 Gm24734 misc_RNA Interval_459 chr1 5681149 5681830 + 0 NA Intergenic Intergenic -36744 ENSMUSG00000093015.1 ENSMUSG00000093015 ENSMUST00000175274 Gm22463 miRNA Interval_8264 chr1 136826417 136826784 + 0 NA Intergenic Intergenic -27641 ENSMUSG00000104261.1 ENSMUSG00000104261 ENSMUST00000195232 Gm17781 processed_pseudogene Interval_78181 chr18 9869016 9869217 + 0 NA intron (ENSMUSG00000036103.9, intron 8 of 9) protein_coding-intron (ENSMUSG00000036103.9, intron 9 of 10) -40077 ENSMUSG00000117453.1 ENSMUSG00000117453 ENSMUST00000234777 Gm2424 processed_pseudogene Interval_87898 chr19 56968045 56968215 + 0 NA intron (ENSMUSG00000025083.18, intron 1 of 20) protein_coding-intron (ENSMUSG00000025083.18, intron 2 of 19) -30892 ENSMUSG00000025083.18 ENSMUSG00000025083 ENSMUST00000132851 Afap1l2 protein_coding Interval_20860 chr10 121586167 121587281 + 0 NA promoter-TSS (ENSMUSG00000020115.3) protein_coding-promoter-TSS (ENSMUSG00000020115.3) 14089 ENSMUSG00000034667.8 ENSMUSG00000034667 ENSMUST00000217865 Xpot protein_coding Interval_138619 chr6 90498582 90499200 + 0 NA intron (ENSMUSG00000030088.15, intron 1 of 2) protein_coding-intron (ENSMUSG00000030088.15, intron 1 of 2) 12498 ENSMUSG00000108111.1 ENSMUSG00000108111 ENSMUST00000203807 Gm45901 lincRNA Interval_21916 chr11 5166916 5167584 + 0 NA Intergenic Intergenic -15010 ENSMUSG00000034164.17 ENSMUSG00000034164 ENSMUST00000138551 Emid1 protein_coding Interval_59707 chr15 58775914 58776574 + 0 NA Intergenic Intergenic 5707 ENSMUSG00000093677.1 ENSMUSG00000093677 ENSMUST00000176387 Gm20712 sense_overlapping Interval_41771 chr12 118924100 118924353 + 0 NA intron (ENSMUSG00000072791.11, intron 13 of 27) protein_coding-intron (ENSMUSG00000072791.11, intron 13 of 27) -33467 ENSMUSG00000072791.11 ENSMUSG00000072791 ENSMUST00000100982 Abcb5 protein_coding Interval_143644 chr7 13674751 13675083 + 0 NA Intergenic Intergenic 20921 ENSMUSG00000099400.1 ENSMUSG00000099400 ENSMUST00000187624 Kat6b-ps1 processed_pseudogene Interval_56710 chr14 121547183 121548386 + 0 NA intron (ENSMUSG00000025558.19, intron 52 of 55) protein_coding-intron (ENSMUSG00000025558.19, intron 51 of 53) 24240 ENSMUSG00000115408.1 ENSMUSG00000115408 ENSMUST00000226518 Gm4529 processed_pseudogene Interval_151854 chr7 127129210 127130250 + 0 NA Intergenic Intergenic 6836 ENSMUSG00000051457.7 ENSMUSG00000051457 ENSMUST00000049931 Spn protein_coding Interval_6247 chr1 104609578 104610125 + 0 NA intron (ENSMUSG00000100935.1, intron 1 of 1) unprocessed_pseudogene-intron (ENSMUSG00000100935.1, intron 1 of 1) 327 ENSMUSG00000100935.1 ENSMUSG00000100935 ENSMUST00000189434 Gm29592 unprocessed_pseudogene Interval_147102 chr7 62924445 62925061 + 0 NA Intergenic Intergenic -101080 ENSMUSG00000109344.1 ENSMUSG00000109344 ENSMUST00000207359 A26c2 protein_coding Interval_128701 chr5 114806526 114806830 + 0 NA TTS (ENSMUSG00000041870.16) protein_coding-TTS (ENSMUSG00000041870.16) 7107 ENSMUSG00000041870.16 ENSMUSG00000041870 ENSMUST00000200704 Ankrd13a protein_coding Interval_95492 chr2 110179638 110180541 + 0 NA Intergenic Intergenic -16800 ENSMUSG00000085444.1 ENSMUSG00000085444 ENSMUST00000130416 Gm13936 antisense Interval_154948 chr8 25226583 25226959 + 0 NA intron (ENSMUSG00000065954.11, intron 1 of 4) protein_coding-intron (ENSMUSG00000065954.11, intron 1 of 2) -25322 ENSMUSG00000065954.11 ENSMUSG00000065954 ENSMUST00000211218 Tacc1 protein_coding Interval_92534 chr2 60396606 60396953 + 0 NA Intergenic Intergenic -13476 ENSMUSG00000026980.15 ENSMUSG00000026980 ENSMUST00000028362 Ly75 protein_coding Interval_78985 chr18 23643318 23643546 + 0 NA intron (ENSMUSG00000024302.16, intron 20 of 24) protein_coding-intron (ENSMUSG00000024302.16, intron 16 of 20) 8405 ENSMUSG00000114088.1 ENSMUSG00000114088 ENSMUST00000220789 Gm47898 antisense Interval_122492 chr5 23418279 23419929 + 0 NA intron (ENSMUSG00000073147.3, intron 1 of 4) lincRNA-intron (ENSMUSG00000073147.3, intron 1 of 6) 14205 ENSMUSG00000073147.3 ENSMUSG00000073147 ENSMUST00000189045 5031425E22Rik lincRNA Interval_65643 chr16 24582111 24582488 + 0 NA intron (ENSMUSG00000033306.15, intron 4 of 6) protein_coding-intron (ENSMUSG00000033306.15, intron 4 of 12) 52905 ENSMUSG00000116875.1 ENSMUSG00000116875 ENSMUST00000231737 Morf4l1-ps1 processed_pseudogene Interval_165359 chr9 46602243 46602510 + 0 NA Intergenic Intergenic -4879 ENSMUSG00000111649.1 ENSMUSG00000111649 ENSMUST00000217349 Gm48945 lincRNA Interval_78382 chr18 12335706 12336017 + 0 NA intron (ENSMUSG00000024421.16, intron 1 of 74) protein_coding-intron (ENSMUSG00000024421.16, intron 1 of 74) -29938 ENSMUSG00000099663.1 ENSMUSG00000099663 ENSMUST00000189120 Gm29201 processed_pseudogene Interval_128053 chr5 110538167 110538461 + 0 NA Intergenic Intergenic 23370 ENSMUSG00000048215.14 ENSMUSG00000048215 ENSMUST00000129007 A630023P12Rik lincRNA Interval_29078 chr11 80193867 80194976 + 0 NA intron (ENSMUSG00000020707.6, intron 3 of 4) protein_coding-intron (ENSMUSG00000020707.6, intron 3 of 4) 10198 ENSMUSG00000020707.6 ENSMUSG00000020707 ENSMUST00000134909 Rnf135 protein_coding Interval_117396 chr4 123451741 123452217 + 0 NA intron (ENSMUSG00000028649.21, intron 44 of 93) protein_coding-intron (ENSMUSG00000028649.21, intron 43 of 92) 16362 ENSMUSG00000081528.1 ENSMUSG00000081528 ENSMUST00000121747 Gm12924 processed_pseudogene Interval_39656 chr12 91823956 91824577 + 0 NA TTS (ENSMUSG00000020964.14) protein_coding-TTS (ENSMUSG00000020964.14) 24891 ENSMUSG00000020964.14 ENSMUSG00000020964 ENSMUST00000169843 Sel1l protein_coding Interval_114752 chr4 84767861 84768381 + 0 NA Intergenic Intergenic 26646 ENSMUSG00000086413.1 ENSMUSG00000086413 ENSMUST00000141637 Gm12415 lincRNA Interval_111593 chr4 24226314 24226550 + 0 NA Intergenic Intergenic -11668 ENSMUSG00000083154.1 ENSMUSG00000083154 ENSMUST00000117711 Gm11892 processed_pseudogene Interval_116721 chr4 116839078 116841391 + 0 NA promoter-TSS (ENSMUSG00000075390.5) processed_pseudogene-promoter-TSS (ENSMUSG00000075390.5) -13 ENSMUSG00000075390.5 ENSMUSG00000075390 ENSMUST00000121187 Rpl36-ps8 processed_pseudogene Interval_150192 chr7 107770077 107771835 + 0 NA Intergenic Intergenic -9983 ENSMUSG00000109402.1 ENSMUSG00000109402 ENSMUST00000208448 Gm45040 antisense Interval_44987 chr13 51157955 51158981 + 0 NA Intergenic Intergenic -12591 ENSMUSG00000021396.5 ENSMUSG00000021396 ENSMUST00000221339 Nxnl2 protein_coding Interval_17172 chr10 73764613 73765692 + 0 NA intron (ENSMUSG00000052613.16, intron 3 of 13) protein_coding-intron (ENSMUSG00000052613.16, intron 3 of 13) -74347 ENSMUSG00000093548.1 ENSMUSG00000093548 ENSMUST00000176468 Gm6407 processed_pseudogene Interval_29888 chr11 87527921 87528627 + 0 NA intron (ENSMUSG00000010342.16, intron 19 of 30) protein_coding-intron (ENSMUSG00000010342.16, intron 19 of 30) -38379 ENSMUSG00000020486.19 ENSMUSG00000020486 ENSMUST00000143950 Septin4 protein_coding Interval_155788 chr8 37845575 37845780 + 0 NA intron (ENSMUSG00000039539.13, intron 2 of 9) protein_coding-intron (ENSMUSG00000039539.13, intron 2 of 7) -56985 ENSMUSG00000081316.1 ENSMUSG00000081316 ENSMUST00000117720 Gm16205 processed_pseudogene Interval_101044 chr2 174482013 174482259 + 0 NA Intergenic Intergenic 3440 ENSMUSG00000080158.2 ENSMUSG00000080158 ENSMUST00000116315 Gm14385 processed_pseudogene Interval_105807 chr3 89429915 89430908 + 0 NA promoter-TSS (ENSMUSG00000047824.13) protein_coding-promoter-TSS (ENSMUSG00000047824.13) -13 ENSMUSG00000047824.13 ENSMUSG00000047824 ENSMUST00000125830 Pygo2 protein_coding Interval_169897 chr9 102800141 102800339 + 0 NA Intergenic Intergenic 20710 ENSMUSG00000111395.1 ENSMUSG00000111395 ENSMUST00000214802 Gm18655 processed_pseudogene Interval_133332 chr6 3365246 3365914 + 0 NA Intergenic Intergenic 19426 ENSMUSG00000047735.14 ENSMUSG00000047735 ENSMUST00000201638 Samd9l protein_coding Interval_66361 chr16 33386947 33388219 + 0 NA intron (ENSMUSG00000022811.17, intron 1 of 2) protein_coding-intron (ENSMUSG00000022811.17, intron 1 of 8) 6720 ENSMUSG00000022811.17 ENSMUSG00000022811 ENSMUST00000089677 Zfp148 protein_coding Interval_100816 chr2 172683359 172683597 + 0 NA Intergenic Intergenic 132487 ENSMUSG00000028640.11 ENSMUSG00000028640 ENSMUST00000142633 Tfap2c protein_coding Interval_96939 chr2 129715624 129715921 + 0 NA Intergenic Intergenic -15928 ENSMUSG00000027400.11 ENSMUSG00000027400 ENSMUST00000152113 Pdyn protein_coding Interval_29263 chr11 82437401 82437974 + 0 NA promoter-TSS (ENSMUSG00000020701.12) protein_coding-promoter-TSS (ENSMUSG00000020701.12) -570 ENSMUSG00000020701.12 ENSMUSG00000020701 ENSMUST00000202598 Tmem132e protein_coding Interval_72595 chr17 30889693 30890120 + 0 NA intron (ENSMUSG00000118341.1, intron 1 of 6) processed_transcript-intron (ENSMUSG00000118341.1, intron 1 of 6) 9435 ENSMUSG00000118281.1 ENSMUSG00000118281 ENSMUST00000235757 Gm50242 lincRNA Interval_110625 chr4 5012344 5012517 + 0 NA Intergenic Intergenic -33556 ENSMUSG00000083228.1 ENSMUSG00000083228 ENSMUST00000118541 Gm11779 processed_pseudogene Interval_169852 chr9 102493244 102493499 + 0 NA Intergenic Intergenic 6581 ENSMUSG00000111859.1 ENSMUSG00000111859 ENSMUST00000213941 Gm47983 TEC Interval_73603 chr17 41000497 41000708 + 0 NA Intergenic Intergenic 5704 ENSMUSG00000117119.1 ENSMUSG00000117119 ENSMUST00000233262 Gm49854 processed_pseudogene Interval_61179 chr15 79782183 79782538 + 0 NA Intergenic Intergenic -17479 ENSMUSG00000022420.16 ENSMUSG00000022420 ENSMUST00000161646 Dnal4 protein_coding Interval_29916 chr11 87725916 87726725 + 0 NA intron (ENSMUSG00000034177.15, intron 3 of 9) protein_coding-intron (ENSMUSG00000034177.15, intron 2 of 8) -11232 ENSMUSG00000020485.14 ENSMUSG00000020485 ENSMUST00000141169 Supt4a protein_coding Interval_43816 chr13 36991130 36991583 + 0 NA intron (ENSMUSG00000039109.16, intron 3 of 5) protein_coding-intron (ENSMUSG00000039109.16, intron 3 of 14) 28117 ENSMUSG00000114329.1 ENSMUSG00000114329 ENSMUST00000224527 Gm30489 antisense Interval_97193 chr2 132161361 132162344 + 0 NA intron (ENSMUSG00000086756.1, intron 2 of 2) antisense-intron (ENSMUSG00000086756.1, intron 2 of 2) 17319 ENSMUSG00000086756.1 ENSMUSG00000086756 ENSMUST00000131603 Gm14051 antisense Interval_132114 chr5 142817087 142818297 + 0 NA promoter-TSS (ENSMUSG00000039477.16) protein_coding-promoter-TSS (ENSMUSG00000039477.16) 35507 ENSMUSG00000082308.1 ENSMUSG00000082308 ENSMUST00000117498 Gm15770 processed_pseudogene Interval_156127 chr8 44991756 44993890 + 0 NA intron (ENSMUSG00000070047.14, intron 2 of 28) protein_coding-intron (ENSMUSG00000070047.14, intron 2 of 25) 29562 ENSMUSG00000097491.1 ENSMUSG00000097491 ENSMUST00000180753 Gm2366 antisense Interval_166356 chr9 58566046 58566259 + 0 NA Intergenic Intergenic 11353 ENSMUSG00000103486.1 ENSMUSG00000103486 ENSMUST00000193528 Gm10657 TEC Interval_49089 chr13 107888603 107891571 + 0 NA promoter-TSS (ENSMUSG00000032846.10) protein_coding-promoter-TSS (ENSMUSG00000032846.10) -23 ENSMUSG00000032846.10 ENSMUSG00000032846 ENSMUST00000224719 Zswim6 protein_coding Interval_98781 chr2 154903798 154904846 + 0 NA intron (ENSMUSG00000027596.10, intron 1 of 4) protein_coding-intron (ENSMUSG00000027596.10, intron 1 of 4) -11540 ENSMUSG00000074656.12 ENSMUSG00000074656 ENSMUST00000135524 Eif2s2 protein_coding Interval_96646 chr2 126767757 126768625 + 0 NA intron (ENSMUSG00000027364.14, intron 2 of 2) protein_coding-intron (ENSMUSG00000027364.14, intron 6 of 6) 15267 ENSMUSG00000027364.14 ENSMUSG00000027364 ENSMUST00000151140 Usp50 protein_coding Interval_65393 chr16 22107458 22108691 + 0 NA intron (ENSMUSG00000033581.17, intron 1 of 4) protein_coding-intron (ENSMUSG00000033581.17, intron 2 of 15) 13162 ENSMUSG00000033581.17 ENSMUSG00000033581 ENSMUST00000127696 Igf2bp2 protein_coding Interval_90841 chr2 32917700 32918025 + 0 NA promoter-TSS (ENSMUSG00000026796.16) protein_coding-promoter-TSS (ENSMUSG00000026796.16) 3151 ENSMUSG00000026796.16 ENSMUSG00000026796 ENSMUST00000151607 Fam129b protein_coding Interval_112162 chr4 35056220 35056502 + 0 NA intron (ENSMUSG00000073910.10, intron 2 of 3) protein_coding-intron (ENSMUSG00000073910.10, intron 2 of 3) 94141 ENSMUSG00000086792.1 ENSMUSG00000086792 ENSMUST00000144419 Gm12364 antisense Interval_82735 chr18 76304791 76305013 + 0 NA TTS (ENSMUSG00000024563.16) protein_coding-TTS (ENSMUSG00000024563.16) -16922 ENSMUSG00000117816.1 ENSMUSG00000117816 ENSMUST00000235901 Gm50360 processed_pseudogene Interval_124000 chr5 37087780 37088967 + 0 NA intron (ENSMUSG00000063646.18, intron 1 of 17) protein_coding-intron (ENSMUSG00000063646.18, intron 2 of 12) 3003 ENSMUSG00000117286.1 ENSMUSG00000117286 ENSMUST00000094840 Gm1043 protein_coding Interval_136537 chr6 55310354 55311143 + 0 NA intron (ENSMUSG00000038022.11, intron 7 of 7) protein_coding-intron (ENSMUSG00000038022.11, intron 17 of 17) -1843 ENSMUSG00000093878.1 ENSMUSG00000093878 ENSMUST00000178981 Gm25458 miRNA Interval_88565 chr2 6187116 6187546 + 0 NA Intergenic Intergenic -5920 ENSMUSG00000087125.1 ENSMUSG00000087125 ENSMUST00000151782 A230108P19Rik antisense Interval_114988 chr4 88094220 88095262 + 0 NA promoter-TSS (ENSMUSG00000038368.16) protein_coding-promoter-TSS (ENSMUSG00000038368.16) -27299 ENSMUSG00000070077.2 ENSMUSG00000070077 ENSMUST00000093569 Mir491 miRNA Interval_171089 chr9 114487013 114487999 + 0 NA Intergenic Intergenic 17410 ENSMUSG00000047898.7 ENSMUSG00000047898 ENSMUST00000215959 Ccr4 protein_coding Interval_36219 chr12 39828419 39829331 + 0 NA Intergenic Intergenic -46575 ENSMUSG00000113761.1 ENSMUSG00000113761 ENSMUST00000221392 Gm4263 transcribed_processed_pseudogene Interval_76461 chr17 80353544 80354586 + 0 NA promoter-TSS (ENSMUSG00000054901.7) protein_coding-promoter-TSS (ENSMUSG00000054901.7) 19476 ENSMUSG00000066938.1 ENSMUSG00000066938 ENSMUST00000086549 Gm10190 protein_coding Interval_162779 chr9 9026790 9028311 + 0 NA intron (ENSMUSG00000050730.17, intron 11 of 15) protein_coding-intron (ENSMUSG00000050730.17, intron 11 of 22) 55759 ENSMUSG00000078117.2 ENSMUSG00000078117 ENSMUST00000104915 Gm16485 TEC Interval_67981 chr16 62638730 62639117 + 0 NA Intergenic Intergenic 37540 ENSMUSG00000116962.1 ENSMUSG00000116962 ENSMUST00000232576 Gm19000 processed_pseudogene Interval_142753 chr6 145347602 145348996 + 0 NA Intergenic Intergenic -18559 ENSMUSG00000088362.1 ENSMUSG00000088362 ENSMUST00000157737 Gm23498 snoRNA Interval_15315 chr10 44449893 44450369 + 0 NA exon (ENSMUSG00000038151.13, exon 4 of 8) protein_coding-exon (ENSMUSG00000038151.13, exon 4 of 8) 7079 ENSMUSG00000038151.13 ENSMUSG00000038151 ENSMUST00000167340 Prdm1 protein_coding Interval_63996 chr16 5119992 5120346 + 0 NA intron (ENSMUSG00000039457.4, intron 1 of 15) protein_coding-intron (ENSMUSG00000039457.4, intron 1 of 21) 12241 ENSMUSG00000039457.4 ENSMUSG00000039457 ENSMUST00000230554 Ppl protein_coding Interval_96865 chr2 129100574 129101763 + 0 NA exon (ENSMUSG00000027395.15, exon 1 of 13) protein_coding-exon (ENSMUSG00000027395.15, exon 1 of 13) -20543 ENSMUSG00000027395.15 ENSMUSG00000027395 ENSMUST00000147727 Polr1b protein_coding Interval_62393 chr15 91709284 91710215 + 0 NA intron (ENSMUSG00000036273.15, intron 13 of 50) protein_coding-intron (ENSMUSG00000036273.15, intron 13 of 50) -92312 ENSMUSG00000087965.1 ENSMUSG00000087965 ENSMUST00000157340 Gm25389 misc_RNA Interval_83043 chr18 80712387 80715570 + 0 NA promoter-TSS (ENSMUSG00000033016.16) protein_coding-promoter-TSS (ENSMUSG00000033016.16) 8788 ENSMUSG00000118265.1 ENSMUSG00000118265 ENSMUST00000237404 Gm50211 antisense Interval_132835 chr5 148236269 148236895 + 0 NA exon (ENSMUSG00000029651.16, exon 1 of 1) protein_coding-exon (ENSMUSG00000029651.16, exon 1 of 1) 590 ENSMUSG00000029651.16 ENSMUSG00000029651 ENSMUST00000085554 Mtus2 protein_coding Interval_48712 chr13 101800989 101801962 + 0 NA Intergenic Intergenic 40831 ENSMUSG00000114223.1 ENSMUSG00000114223 ENSMUST00000225177 Gm19108 processed_pseudogene Interval_30667 chr11 95777661 95779245 + 0 NA intron (ENSMUSG00000075595.9, intron 5 of 6) protein_coding-intron (ENSMUSG00000075595.9, intron 5 of 6) 16962 ENSMUSG00000082981.1 ENSMUSG00000082981 ENSMUST00000120170 Polr2k-ps processed_pseudogene Interval_126747 chr5 92495433 92496217 + 0 NA intron (ENSMUSG00000029426.8, intron 1 of 11) protein_coding-intron (ENSMUSG00000029426.8, intron 1 of 11) 11008 ENSMUSG00000029426.8 ENSMUSG00000029426 ENSMUST00000201253 Scarb2 protein_coding Interval_23911 chr11 28211800 28212169 + 0 NA Intergenic Intergenic 127830 ENSMUSG00000032889.7 ENSMUSG00000032889 ENSMUST00000042595 Gm6685 processed_pseudogene Interval_97348 chr2 135209269 135209462 + 0 NA intron (ENSMUSG00000085247.1, intron 2 of 5) protein_coding-intron (ENSMUSG00000051177.16, intron 3 of 31) 6251 ENSMUSG00000085247.1 ENSMUSG00000085247 ENSMUST00000138303 4930545L23Rik antisense Interval_59534 chr15 55104854 55105658 + 0 NA intron (ENSMUSG00000053749.12, intron 2 of 2) processed_transcript-intron (ENSMUSG00000053749.12, intron 2 of 2) 8421 ENSMUSG00000053749.12 ENSMUSG00000053749 ENSMUST00000137301 Gm9920 processed_transcript Interval_33968 chr11 119726646 119727588 + 0 NA intron (ENSMUSG00000025583.15, intron 4 of 32) protein_coding-intron (ENSMUSG00000025583.15, intron 4 of 33) -19284 ENSMUSG00000088670.1 ENSMUSG00000088670 ENSMUST00000158045 Gm23663 snoRNA Interval_128820 chr5 115450842 115451035 + 0 NA TTS (ENSMUSG00000054256.11) protein_coding-TTS (ENSMUSG00000054256.11) -14294 ENSMUSG00000107353.1 ENSMUSG00000107353 ENSMUST00000202251 4930430O22Rik antisense Interval_142813 chr6 145978131 145978330 + 0 NA Intergenic Intergenic -20696 ENSMUSG00000085414.1 ENSMUSG00000085414 ENSMUST00000139089 Sspnos antisense Interval_115326 chr4 96553163 96554319 + 0 NA promoter-TSS (ENSMUSG00000052914.4) protein_coding-promoter-TSS (ENSMUSG00000052914.4) -80 ENSMUSG00000052914.4 ENSMUSG00000052914 ENSMUST00000030303 Cyp2j6 protein_coding Interval_3120 chr1 53642395 53642744 + 0 NA intron (ENSMUSG00000096141.2, intron 10 of 65) protein_coding-intron (ENSMUSG00000096141.2, intron 10 of 65) 64215 ENSMUSG00000096141.2 ENSMUSG00000096141 ENSMUST00000189677 Dnah7a protein_coding Interval_20943 chr10 122558799 122560233 + 0 NA Intergenic Intergenic 10375 ENSMUSG00000112095.1 ENSMUSG00000112095 ENSMUST00000219429 A130077B15Rik lincRNA Interval_45965 chr13 59685078 59685460 + 0 NA Intergenic Intergenic -3102 ENSMUSG00000114727.1 ENSMUSG00000114727 ENSMUST00000225788 Gm47269 processed_pseudogene Interval_96313 chr2 121546164 121546494 + 0 NA exon (ENSMUSG00000027238.17, exon 15 of 15) protein_coding-exon (ENSMUSG00000027238.17, exon 15 of 15) 5022 ENSMUSG00000027238.17 ENSMUSG00000027238 ENSMUST00000153704 Frmd5 protein_coding Interval_170987 chr9 113508283 113508827 + 0 NA promoter-TSS (ENSMUSG00000109890.2) lincRNA-promoter-TSS (ENSMUSG00000109890.2) -200 ENSMUSG00000109890.2 ENSMUSG00000109890 ENSMUST00000209716 AU023762 lincRNA Interval_142539 chr6 143154832 143157607 + 0 NA Intergenic Intergenic -2288 ENSMUSG00000108094.1 ENSMUSG00000108094 ENSMUST00000204101 Gm31108 lincRNA Interval_128890 chr5 115919928 115920395 + 0 NA intron (ENSMUSG00000029516.19, intron 10 of 10) protein_coding-intron (ENSMUSG00000029516.19, intron 9 of 46) 17731 ENSMUSG00000107263.1 ENSMUSG00000107263 ENSMUST00000201457 Gm42471 TEC Interval_138259 chr6 86676904 86677592 + 0 NA intron (ENSMUSG00000001158.13, intron 4 of 5) protein_coding-intron (ENSMUSG00000001158.13, intron 4 of 5) 7269 ENSMUSG00000001158.13 ENSMUSG00000001158 ENSMUST00000133404 Snrnp27 protein_coding Interval_30873 chr11 97000690 97001409 + 0 NA Intergenic Intergenic -17684 ENSMUSG00000038560.7 ENSMUSG00000038560 ENSMUST00000107622 Sp6 protein_coding Interval_71851 chr17 26507896 26509452 + 0 NA promoter-TSS (ENSMUSG00000024190.7) protein_coding-promoter-TSS (ENSMUSG00000024190.7) -202 ENSMUSG00000024190.7 ENSMUSG00000024190 ENSMUST00000011196 Dusp1 protein_coding Interval_52817 chr14 50855509 50856602 + 0 NA intron (ENSMUSG00000006281.8, intron 9 of 54) protein_coding-intron (ENSMUSG00000006281.8, intron 9 of 54) -14329 ENSMUSG00000097431.2 ENSMUSG00000097431 ENSMUST00000228254 Gm26782 antisense Interval_141129 chr6 125160030 125162277 + 0 NA TTS (ENSMUSG00000057666.18) protein_coding-TTS (ENSMUSG00000057666.18) 3850 ENSMUSG00000057666.18 ENSMUSG00000057666 ENSMUST00000144588 Gapdh protein_coding Interval_50466 chr14 13761347 13761801 + 0 NA Intergenic Intergenic 16577 ENSMUSG00000098694.1 ENSMUSG00000098694 ENSMUST00000184558 Gm27506 miRNA Interval_9168 chr1 154448996 154449221 + 0 NA intron (ENSMUSG00000004110.17, intron 26 of 46) protein_coding-intron (ENSMUSG00000004110.17, intron 26 of 46) -125500 ENSMUSG00000100031.1 ENSMUSG00000100031 ENSMUST00000185981 Gm18727 processed_pseudogene Interval_120485 chr4 148907846 148909039 + 0 NA intron (ENSMUSG00000028977.17, intron 2 of 3) protein_coding-intron (ENSMUSG00000028977.17, intron 4 of 15) 5882 ENSMUSG00000086766.1 ENSMUSG00000086766 ENSMUST00000151967 Gm15969 antisense Interval_31397 chr11 100434519 100436162 + 0 NA intron (ENSMUSG00000017176.17, intron 3 of 4) protein_coding-intron (ENSMUSG00000017176.17, intron 5 of 8) 5589 ENSMUSG00000017176.17 ENSMUSG00000017176 ENSMUST00000130666 Nt5c3b protein_coding Interval_100261 chr2 168032085 168032287 + 0 NA Intergenic Intergenic 21657 ENSMUSG00000086411.1 ENSMUSG00000086411 ENSMUST00000142374 Gm14236 antisense Interval_42007 chr13 6465756 6466435 + 0 NA Intergenic Intergenic -64500 ENSMUSG00000114195.1 ENSMUSG00000114195 ENSMUST00000221776 2900042G08Rik TEC Interval_121941 chr5 10700072 10700312 + 0 NA Intergenic Intergenic 6972 ENSMUSG00000105295.1 ENSMUSG00000105295 ENSMUST00000196845 Gm42834 processed_pseudogene Interval_174627 chrX 160448170 160449603 + 0 NA intron (ENSMUSG00000031298.15, intron 3 of 3) protein_coding-intron (ENSMUSG00000031298.15, intron 4 of 27) 50984 ENSMUSG00000087505.1 ENSMUSG00000087505 ENSMUST00000125700 Gm15241 antisense Interval_172215 chrX 9747283 9747827 + 0 NA Intergenic Intergenic -84552 ENSMUSG00000031176.8 ENSMUSG00000031176 ENSMUST00000140019 Dynlt3 protein_coding Interval_58028 chr15 26639830 26640007 + 0 NA intron (ENSMUSG00000115433.1, intron 5 of 5) protein_coding-intron (ENSMUSG00000043556.10, intron 2 of 3) 5371 ENSMUSG00000115399.1 ENSMUSG00000115399 ENSMUST00000227714 9430068D22Rik TEC Interval_138540 chr6 89033712 89034322 + 0 NA intron (ENSMUSG00000055403.13, intron 1 of 2) lincRNA-intron (ENSMUSG00000055403.13, intron 1 of 2) 83334 ENSMUSG00000055403.13 ENSMUSG00000055403 ENSMUST00000153981 4933427D06Rik lincRNA Interval_169126 chr9 93001825 93002462 + 0 NA intron (ENSMUSG00000100294.6, intron 2 of 2) lincRNA-intron (ENSMUSG00000100294.6, intron 2 of 3) 3596 ENSMUSG00000100294.6 ENSMUSG00000100294 ENSMUST00000188921 1700034K08Rik lincRNA Interval_51668 chr14 31233827 31234911 + 0 NA Intergenic Intergenic 16509 ENSMUSG00000021904.6 ENSMUSG00000021904 ENSMUST00000090180 Sema3g protein_coding Interval_40783 chr12 108352502 108353369 + 0 NA TTS (ENSMUSG00000021259.5) protein_coding-TTS (ENSMUSG00000021259.5) 6850 ENSMUSG00000021259.5 ENSMUSG00000021259 ENSMUST00000222240 Cyp46a1 protein_coding Interval_40908 chr12 109749341 109751036 + 0 NA TTS (ENSMUSG00000097391.8) lincRNA-TTS (ENSMUSG00000097391.8) 2310 ENSMUSG00000093351.1 ENSMUSG00000093351 ENSMUST00000175610 Mir3072 miRNA Interval_31836 chr11 103233066 103233379 + 0 NA intron (ENSMUSG00000020941.7, intron 6 of 15) protein_coding-intron (ENSMUSG00000020941.7, intron 6 of 15) 6912 ENSMUSG00000020941.7 ENSMUSG00000020941 ENSMUST00000152677 Map3k14 protein_coding Interval_133696 chr6 8827891 8828653 + 0 NA Intergenic Intergenic -69873 ENSMUSG00000062995.12 ENSMUSG00000062995 ENSMUST00000151758 Ica1 protein_coding Interval_3963 chr1 65111736 65112961 + 0 NA intron (ENSMUSG00000044816.10, intron 4 of 6) protein_coding-intron (ENSMUSG00000044816.10, intron 5 of 7) 7210 ENSMUSG00000100846.1 ENSMUSG00000100846 ENSMUST00000144760 Gm28845 protein_coding Interval_21683 chr11 3667722 3668470 + 0 NA intron (ENSMUSG00000034543.15, intron 4 of 5) protein_coding-intron (ENSMUSG00000034543.15, intron 4 of 26) -11305 ENSMUSG00000088250.1 ENSMUSG00000088250 ENSMUST00000157625 Gm26393 snRNA Interval_150162 chr7 107481585 107481793 + 0 NA intron (ENSMUSG00000062542.11, intron 3 of 6) protein_coding-intron (ENSMUSG00000062542.11, intron 3 of 6) -22373 ENSMUSG00000062542.11 ENSMUSG00000062542 ENSMUST00000127444 Syt9 protein_coding Interval_22488 chr11 11034540 11034814 + 0 NA Intergenic Intergenic -81808 ENSMUSG00000050830.17 ENSMUSG00000050830 ENSMUST00000154155 Vwc2 protein_coding Interval_139780 chr6 108643986 108644853 + 0 NA intron (ENSMUSG00000087341.4, intron 1 of 6) antisense-intron (ENSMUSG00000087341.4, intron 1 of 6) -12626 ENSMUSG00000090576.2 ENSMUSG00000090576 ENSMUST00000204397 Gm17055 processed_transcript Interval_159021 chr8 88867561 88868046 + 0 NA Intergenic Intergenic -4729 ENSMUSG00000109778.1 ENSMUSG00000109778 ENSMUST00000211407 Gm45504 TEC Interval_149242 chr7 96609900 96610253 + 0 NA intron (ENSMUSG00000085792.2, intron 1 of 2) protein_coding-intron (ENSMUSG00000048078.16, intron 6 of 32) 18993 ENSMUSG00000085792.2 ENSMUSG00000085792 ENSMUST00000155217 Gm15414 antisense Interval_91353 chr2 38149374 38149683 + 0 NA intron (ENSMUSG00000035392.17, intron 2 of 18) protein_coding-intron (ENSMUSG00000035392.17, intron 3 of 21) 18291 ENSMUSG00000035392.17 ENSMUSG00000035392 ENSMUST00000128492 Dennd1a protein_coding Interval_51009 chr14 21586142 21587734 + 0 NA intron (ENSMUSG00000021767.19, intron 2 of 5) protein_coding-intron (ENSMUSG00000021767.19, intron 2 of 16) 70063 ENSMUSG00000021767.19 ENSMUSG00000021767 ENSMUST00000226589 Kat6b protein_coding Interval_38480 chr12 79330463 79331052 + 0 NA intron (ENSMUSG00000059060.15, intron 1 of 2) protein_coding-intron (ENSMUSG00000059060.15, intron 7 of 7) 3404 ENSMUSG00000059060.15 ENSMUSG00000059060 ENSMUST00000221257 Rad51b protein_coding Interval_59970 chr15 62422370 62422945 + 0 NA Intergenic Intergenic -145318 ENSMUSG00000115862.1 ENSMUSG00000115862 ENSMUST00000230029 Gm41333 lincRNA Interval_139590 chr6 101816245 101816760 + 0 NA Intergenic Intergenic -24693 ENSMUSG00000107579.1 ENSMUSG00000107579 ENSMUST00000204336 Gm44176 lincRNA Interval_82022 chr18 67241688 67242214 + 0 NA intron (ENSMUSG00000062526.4, intron 2 of 4) protein_coding-intron (ENSMUSG00000062526.4, intron 2 of 10) 3490 ENSMUSG00000062526.4 ENSMUSG00000062526 ENSMUST00000237631 Mppe1 protein_coding Interval_78421 chr18 12713826 12714665 + 0 NA promoter-TSS (ENSMUSG00000087950.1) miRNA-promoter-TSS (ENSMUSG00000087950.1) -566 ENSMUSG00000087950.1 ENSMUSG00000087950 ENSMUST00000157325 Mir1948 miRNA Interval_3115 chr1 53613508 53613972 + 0 NA intron (ENSMUSG00000096141.2, intron 19 of 65) protein_coding-intron (ENSMUSG00000096141.2, intron 19 of 65) 93044 ENSMUSG00000096141.2 ENSMUSG00000096141 ENSMUST00000189677 Dnah7a protein_coding Interval_29682 chr11 86010472 86010693 + 0 NA Intergenic Intergenic 60087 ENSMUSG00000081632.1 ENSMUSG00000081632 ENSMUST00000118790 Gm11443 processed_pseudogene Interval_25647 chr11 50391036 50392003 + 0 NA intron (ENSMUSG00000020375.9, intron 16 of 17) protein_coding-intron (ENSMUSG00000020375.9, intron 16 of 17) 8340 ENSMUSG00000007850.16 ENSMUSG00000007850 ENSMUST00000151537 Hnrnph1 protein_coding Interval_138181 chr6 85975138 85975576 + 0 NA intron (ENSMUSG00000107230.1, intron 2 of 2) antisense-intron (ENSMUSG00000107230.1, intron 2 of 2) -13715 ENSMUSG00000030002.15 ENSMUSG00000030002 ENSMUST00000202379 Dusp11 protein_coding Interval_14295 chr10 30584328 30584775 + 0 NA intron (ENSMUSG00000019792.8, intron 2 of 5) protein_coding-intron (ENSMUSG00000019792.8, intron 7 of 12) 16126 ENSMUSG00000019792.8 ENSMUSG00000019792 ENSMUST00000216638 Trmt11 protein_coding Interval_171478 chr9 118670889 118671135 + 0 NA intron (ENSMUSG00000039115.13, intron 9 of 27) protein_coding-intron (ENSMUSG00000039115.13, intron 9 of 27) -80817 ENSMUSG00000110676.1 ENSMUSG00000110676 ENSMUST00000212679 Gm45897 lincRNA Interval_13561 chr10 19692702 19693863 + 0 NA Intergenic Intergenic -19352 ENSMUSG00000020007.4 ENSMUSG00000020007 ENSMUST00000217389 Il20ra protein_coding Interval_42725 chr13 18600125 18600917 + 0 NA Intergenic Intergenic 44828 ENSMUSG00000114118.1 ENSMUSG00000114118 ENSMUST00000221183 Gm48829 lincRNA Interval_24606 chr11 35151173 35152342 + 0 NA intron (ENSMUSG00000056427.10, intron 1 of 35) protein_coding-intron (ENSMUSG00000056427.10, intron 1 of 35) -19872 ENSMUSG00000056427.10 ENSMUSG00000056427 ENSMUST00000124438 Slit3 protein_coding Interval_80822 chr18 47575679 47576298 + 0 NA intron (ENSMUSG00000118259.1, intron 1 of 5) lincRNA-intron (ENSMUSG00000118259.1, intron 1 of 5) 38253 ENSMUSG00000118259.1 ENSMUSG00000118259 ENSMUST00000236621 Gm5095 lincRNA Interval_53671 chr14 60770882 60771434 + 0 NA intron (ENSMUSG00000071347.3, intron 1 of 3) protein_coding-intron (ENSMUSG00000071347.3, intron 1 of 3) 3024 ENSMUSG00000071347.3 ENSMUSG00000071347 ENSMUST00000025940 C1qtnf9 protein_coding Interval_93331 chr2 72003036 72003297 + 0 NA intron (ENSMUSG00000049044.16, intron 1 of 5) protein_coding-intron (ENSMUSG00000049044.16, intron 1 of 30) -3374 ENSMUSG00000088297.1 ENSMUSG00000088297 ENSMUST00000157672 Gm26408 snoRNA Interval_124855 chr5 56992944 56993298 + 0 NA Intergenic Intergenic -117703 ENSMUSG00000088751.1 ENSMUSG00000088751 ENSMUST00000158126 Gm24902 snoRNA Interval_10494 chr1 171306764 171307717 + 0 NA promoter-TSS (ENSMUSG00000087747.1) snoRNA-promoter-TSS (ENSMUSG00000087747.1) -807 ENSMUSG00000087747.1 ENSMUSG00000087747 ENSMUST00000157122 Gm25151 snoRNA Interval_165384 chr9 47076963 47078344 + 0 NA Intergenic Intergenic 78912 ENSMUSG00000094893.2 ENSMUSG00000094893 ENSMUST00000178065 Gm4791 protein_coding Interval_41486 chr12 114989146 114990225 + 0 NA Intergenic Intergenic 1895 ENSMUSG00000076709.2 ENSMUSG00000076709 ENSMUST00000194865 Ighv1-47 IG_V_gene Interval_29515 chr11 84585524 84587288 + 0 NA Intergenic Intergenic 60746 ENSMUSG00000087211.7 ENSMUSG00000087211 ENSMUST00000128121 Lhx1os lincRNA Interval_23488 chr11 22906316 22907209 + 0 NA intron (ENSMUSG00000051355.18, intron 1 of 1) protein_coding-intron (ENSMUSG00000051355.18, intron 3 of 3) 37861 ENSMUSG00000065869.1 ENSMUSG00000065869 ENSMUST00000083935 Gm24917 snRNA Interval_107267 chr3 105078034 105078751 + 0 NA exon (ENSMUSG00000051788.4, exon 5 of 5) protein_coding-exon (ENSMUSG00000051788.4, exon 5 of 5) 11548 ENSMUSG00000051788.4 ENSMUSG00000051788 ENSMUST00000070584 4930564D02Rik protein_coding Interval_18829 chr10 91150936 91151168 + 0 NA intron (ENSMUSG00000019961.17, intron 8 of 8) protein_coding-intron (ENSMUSG00000019961.17, intron 8 of 8) 19410 ENSMUSG00000019961.17 ENSMUSG00000019961 ENSMUST00000213270 Tmpo protein_coding Interval_67605 chr16 52186031 52186374 + 0 NA exon (ENSMUSG00000022637.11, exon 15 of 18) protein_coding-exon (ENSMUSG00000022637.11, exon 15 of 18) 33676 ENSMUSG00000022637.11 ENSMUSG00000022637 ENSMUST00000228247 Cblb protein_coding Interval_127400 chr5 103726338 103726808 + 0 NA intron (ENSMUSG00000029313.18, intron 2 of 6) protein_coding-intron (ENSMUSG00000029313.18, intron 2 of 6) -27991 ENSMUSG00000029313.18 ENSMUSG00000029313 ENSMUST00000152145 Aff1 protein_coding Interval_98262 chr2 150637538 150638609 + 0 NA promoter-TSS (ENSMUSG00000027452.11) protein_coding-promoter-TSS (ENSMUSG00000027452.11) 42 ENSMUSG00000027452.11 ENSMUSG00000027452 ENSMUST00000141785 Acss1 protein_coding Interval_165433 chr9 47853509 47854100 + 0 NA TTS (ENSMUSG00000032076.20) protein_coding-TTS (ENSMUSG00000032076.20) -77067 ENSMUSG00000111155.1 ENSMUSG00000111155 ENSMUST00000216522 Gm47197 TEC Interval_60431 chr15 73707279 73708098 + 0 NA promoter-TSS (ENSMUSG00000045281.5) protein_coding-promoter-TSS (ENSMUSG00000045281.5) -183 ENSMUSG00000045281.5 ENSMUSG00000045281 ENSMUST00000064166 Gpr20 protein_coding Interval_60406 chr15 73553492 73555492 + 0 NA intron (ENSMUSG00000036661.14, intron 13 of 23) protein_coding-intron (ENSMUSG00000036661.14, intron 13 of 22) 34470 ENSMUSG00000079020.9 ENSMUSG00000079020 ENSMUST00000150409 Slc45a4 protein_coding Interval_137264 chr6 70892575 70893957 + 0 NA exon (ENSMUSG00000031668.14, exon 11 of 11) protein_coding-exon (ENSMUSG00000031668.14, exon 11 of 11) -7464 ENSMUSG00000105776.1 ENSMUSG00000105776 ENSMUST00000199580 Gm43292 TEC Interval_44746 chr13 48170818 48172265 + 0 NA intron (ENSMUSG00000114457.1, intron 2 of 3) antisense-intron (ENSMUSG00000097622.2, intron 1 of 2) 65710 ENSMUSG00000114457.1 ENSMUSG00000114457 ENSMUST00000225626 Gm36346 lincRNA Interval_146066 chr7 43635522 43636462 + 0 NA intron (ENSMUSG00000030472.9, intron 1 of 5) protein_coding-intron (ENSMUSG00000030472.9, intron 1 of 5) 1285 ENSMUSG00000030472.9 ENSMUSG00000030472 ENSMUST00000032663 Ceacam18 protein_coding Interval_52439 chr14 46397530 46400170 + 0 NA Intergenic Intergenic 11297 ENSMUSG00000086746.2 ENSMUSG00000086746 ENSMUST00000228667 Gm15222 antisense Interval_133886 chr6 14270841 14271032 + 0 NA Intergenic Intergenic 119115 ENSMUSG00000107403.1 ENSMUSG00000107403 ENSMUST00000204077 Gm8820 processed_pseudogene Interval_149538 chr7 99438781 99439170 + 0 NA intron (ENSMUSG00000035314.10, intron 2 of 15) protein_coding-intron (ENSMUSG00000035314.10, intron 5 of 17) 14862 ENSMUSG00000035314.10 ENSMUSG00000035314 ENSMUST00000208061 Gdpd5 protein_coding Interval_139536 chr6 100858202 100858981 + 0 NA intron (ENSMUSG00000052144.8, intron 1 of 3) protein_coding-intron (ENSMUSG00000052144.8, intron 3 of 8) 6106 ENSMUSG00000052144.8 ENSMUSG00000052144 ENSMUST00000203067 Ppp4r2 protein_coding Interval_110588 chr4 4268564 4269540 + 0 NA Intergenic Intergenic -130233 ENSMUSG00000045573.9 ENSMUSG00000045573 ENSMUST00000133567 Penk protein_coding Interval_100259 chr2 168016940 168017554 + 0 NA Intergenic Intergenic 6718 ENSMUSG00000086411.1 ENSMUSG00000086411 ENSMUST00000142374 Gm14236 antisense Interval_79902 chr18 35810551 35810912 + 0 NA intron (ENSMUSG00000117841.1, intron 4 of 4) processed_transcript-intron (ENSMUSG00000117841.1, intron 4 of 4) 10889 ENSMUSG00000117841.1 ENSMUSG00000117841 ENSMUST00000235919 Gm50371 processed_transcript Interval_9522 chr1 158408394 158408668 + 0 NA intron (ENSMUSG00000026587.15, intron 1 of 21) protein_coding-intron (ENSMUSG00000026587.15, intron 1 of 22) 32595 ENSMUSG00000103762.1 ENSMUSG00000103762 ENSMUST00000193534 Gm37861 TEC Interval_167044 chr9 64784734 64785266 + 0 NA Intergenic Intergenic -58270 ENSMUSG00000104953.1 ENSMUSG00000104953 ENSMUST00000197528 Gm47308 miRNA Interval_171267 chr9 115840098 115841914 + 0 NA Intergenic Intergenic -96136 ENSMUSG00000056880.12 ENSMUSG00000056880 ENSMUST00000121770 Gadl1 protein_coding Interval_37354 chr12 65401869 65402696 + 0 NA Intergenic Intergenic 3688 ENSMUSG00000077590.1 ENSMUSG00000077590 ENSMUST00000104402 Gm26015 snoRNA Interval_131248 chr5 135984409 135984932 + 0 NA intron (ENSMUSG00000004948.12, intron 3 of 4) protein_coding-intron (ENSMUSG00000004948.12, intron 4 of 7) 4502 ENSMUSG00000004948.12 ENSMUSG00000004948 ENSMUST00000131563 Zp3 protein_coding Interval_32166 chr11 105884665 105885114 + 0 NA intron (ENSMUSG00000053580.16, intron 13 of 25) protein_coding-intron (ENSMUSG00000053580.16, intron 13 of 25) 8984 ENSMUSG00000081270.1 ENSMUSG00000081270 ENSMUST00000119992 Gm11653 processed_pseudogene Interval_108239 chr3 122871852 122872065 + 0 NA intron (ENSMUSG00000097852.5, intron 5 of 6) antisense-intron (ENSMUSG00000097852.5, intron 5 of 6) 10045 ENSMUSG00000106059.1 ENSMUSG00000106059 ENSMUST00000199220 Gm9364 processed_pseudogene Interval_29805 chr11 86963924 86964460 + 0 NA intron (ENSMUSG00000018427.8, intron 1 of 3) protein_coding-intron (ENSMUSG00000018427.8, intron 2 of 4) 7832 ENSMUSG00000018427.8 ENSMUSG00000018427 ENSMUST00000238921 Ypel2 protein_coding Interval_33197 chr11 115162643 115164128 + 0 NA promoter-TSS (ENSMUSG00000020733.3) protein_coding-promoter-TSS (ENSMUSG00000020733.3) 44 ENSMUSG00000020733.3 ENSMUSG00000020733 ENSMUST00000021077 Slc9a3r1 protein_coding Interval_156366 chr8 47742512 47744483 + 0 NA Intergenic Intergenic 6637 ENSMUSG00000110665.1 ENSMUSG00000110665 ENSMUST00000212428 Gm31786 lincRNA Interval_56305 chr14 116939066 116939719 + 0 NA intron (ENSMUSG00000058571.11, intron 1 of 9) protein_coding-intron (ENSMUSG00000058571.11, intron 1 of 8) 13861 ENSMUSG00000058571.11 ENSMUSG00000058571 ENSMUST00000078849 Gpc6 protein_coding Interval_63997 chr16 5121608 5122353 + 0 NA intron (ENSMUSG00000039457.4, intron 1 of 15) protein_coding-intron (ENSMUSG00000039457.4, intron 1 of 21) 10430 ENSMUSG00000039457.4 ENSMUSG00000039457 ENSMUST00000230554 Ppl protein_coding Interval_152222 chr7 130734385 130734997 + 0 NA intron (ENSMUSG00000030852.18, intron 4 of 6) protein_coding-intron (ENSMUSG00000030852.18, intron 5 of 17) 21014 ENSMUSG00000030852.18 ENSMUSG00000030852 ENSMUST00000207230 Tacc2 protein_coding Interval_164083 chr9 31376303 31377248 + 0 NA intron (ENSMUSG00000042496.18, intron 20 of 20) protein_coding-intron (ENSMUSG00000042496.18, intron 20 of 20) -19376 ENSMUSG00000042185.14 ENSMUSG00000042185 ENSMUST00000143558 Nfrkb protein_coding Interval_133681 chr6 8508982 8510484 + 0 NA promoter-TSS (ENSMUSG00000087305.8) processed_transcript-promoter-TSS (ENSMUSG00000087305.8) -655 ENSMUSG00000087305.8 ENSMUSG00000087305 ENSMUST00000144568 A430035B10Rik processed_transcript Interval_67346 chr16 46926185 46926387 + 0 NA Intergenic Intergenic -147912 ENSMUSG00000081624.1 ENSMUSG00000081624 ENSMUST00000117218 Gm6912 processed_pseudogene Interval_78925 chr18 21734053 21734276 + 0 NA Intergenic Intergenic -79446 ENSMUSG00000042514.11 ENSMUSG00000042514 ENSMUST00000122333 Klhl14 protein_coding Interval_126260 chr5 84901626 84901951 + 0 NA Intergenic Intergenic -34943 ENSMUSG00000106389.1 ENSMUSG00000106389 ENSMUST00000196930 Gm21006 processed_pseudogene Interval_3393 chr1 57911866 57912142 + 0 NA intron (ENSMUSG00000091283.1, intron 1 of 1) protein_coding-intron (ENSMUSG00000038305.15, intron 7 of 11) 5107 ENSMUSG00000091283.1 ENSMUSG00000091283 ENSMUST00000172128 Gm17234 antisense Interval_135045 chr6 34929789 34930037 + 0 NA intron (ENSMUSG00000029848.11, intron 2 of 8) protein_coding-intron (ENSMUSG00000029848.11, intron 3 of 9) 8909 ENSMUSG00000029848.11 ENSMUSG00000029848 ENSMUST00000114997 Stra8 protein_coding Interval_72688 chr17 31563954 31565893 + 0 NA promoter-TSS (ENSMUSG00000006705.13) protein_coding-promoter-TSS (ENSMUSG00000006705.13) 120 ENSMUSG00000093323.1 ENSMUSG00000093323 ENSMUST00000175582 Gm24970 miRNA Interval_144388 chr7 24852744 24854446 + 0 NA Intergenic Intergenic -7351 ENSMUSG00000108302.1 ENSMUSG00000108302 ENSMUST00000205486 Gm18207 processed_pseudogene Interval_107763 chr3 113623591 113624024 + 0 NA intron (ENSMUSG00000027981.14, intron 3 of 13) protein_coding-intron (ENSMUSG00000027981.14, intron 3 of 14) 6093 ENSMUSG00000027981.14 ENSMUSG00000027981 ENSMUST00000127068 Rnpc3 protein_coding Interval_134833 chr6 31975441 31975623 + 0 NA Intergenic Intergenic -74714 ENSMUSG00000029766.7 ENSMUSG00000029766 ENSMUST00000156267 1700012A03Rik protein_coding Interval_71475 chr17 24021243 24023740 + 0 NA TTS (ENSMUSG00000077184.1) snoRNA-TTS (ENSMUSG00000077184.1) 837 ENSMUSG00000077184.1 ENSMUSG00000077184 ENSMUST00000103996 Gm25092 snoRNA Interval_86321 chr19 38716691 38717295 + 0 NA exon (ENSMUSG00000024998.17, exon 7 of 32) protein_coding-exon (ENSMUSG00000024998.17, exon 7 of 32) -12669 ENSMUSG00000117935.1 ENSMUSG00000117935 ENSMUST00000237606 Gm8717 processed_pseudogene Interval_95415 chr2 108843153 108844871 + 0 NA Intergenic Intergenic 31246 ENSMUSG00000083424.3 ENSMUSG00000083424 ENSMUST00000121779 Rpl35a-ps4 processed_pseudogene Interval_152766 chr7 137373961 137374507 + 0 NA TTS (ENSMUSG00000109843.1) processed_pseudogene-TTS (ENSMUSG00000109843.1) 3398 ENSMUSG00000109843.1 ENSMUSG00000109843 ENSMUST00000210711 Gm17841 processed_pseudogene Interval_99233 chr2 158284321 158285149 + 0 NA TTS (ENSMUSG00000052922.9) protein_coding-TTS (ENSMUSG00000052922.9) -21758 ENSMUSG00000016024.9 ENSMUSG00000016024 ENSMUST00000129811 Lbp protein_coding Interval_7850 chr1 134119563 134120614 + 0 NA intron (ENSMUSG00000026450.14, intron 1 of 10) protein_coding-intron (ENSMUSG00000026450.14, intron 1 of 11) 8846 ENSMUSG00000026450.14 ENSMUSG00000026450 ENSMUST00000086475 Chit1 protein_coding Interval_65656 chr16 24875575 24876300 + 0 NA intron (ENSMUSG00000033306.15, intron 1 of 3) protein_coding-intron (ENSMUSG00000033306.15, intron 9 of 12) -8236 ENSMUSG00000077602.1 ENSMUSG00000077602 ENSMUST00000104414 Gm22672 snoRNA Interval_11167 chr1 179802693 179804164 + 0 NA promoter-TSS (ENSMUSG00000073486.2) antisense-promoter-TSS (ENSMUSG00000073486.2) 52 ENSMUSG00000073486.2 ENSMUSG00000073486 ENSMUST00000097454 Gm10518 antisense Interval_54834 chr14 75700343 75701289 + 0 NA Intergenic Intergenic 32171 ENSMUSG00000034893.9 ENSMUSG00000034893 ENSMUST00000228081 Cog3 protein_coding Interval_67911 chr16 59457296 59459720 + 0 NA intron (ENSMUSG00000074991.5, intron 8 of 8) protein_coding-intron (ENSMUSG00000074991.5, intron 8 of 8) 10730 ENSMUSG00000099983.1 ENSMUSG00000099983 ENSMUST00000188342 1700022E09Rik lincRNA Interval_20711 chr10 120422187 120423139 + 0 NA intron (ENSMUSG00000056758.14, intron 3 of 5) protein_coding-intron (ENSMUSG00000056758.14, intron 3 of 4) 25447 ENSMUSG00000076448.1 ENSMUSG00000076448 ENSMUST00000103249 Mir763 miRNA Interval_157186 chr8 67320409 67320778 + 0 NA Intergenic Intergenic 9906 ENSMUSG00000110632.1 ENSMUSG00000110632 ENSMUST00000213041 Gm45880 processed_pseudogene Interval_157572 chr8 71485631 71486080 + 0 NA exon (ENSMUSG00000034863.9, exon 1 of 17) protein_coding-exon (ENSMUSG00000034863.9, exon 1 of 17) 108 ENSMUSG00000034863.9 ENSMUSG00000034863 ENSMUST00000213016 Ano8 protein_coding Interval_7002 chr1 121706461 121707142 + 0 NA exon (ENSMUSG00000102488.1, exon 1 of 1) TEC-exon (ENSMUSG00000102488.1, exon 1 of 1) 286 ENSMUSG00000102488.1 ENSMUSG00000102488 ENSMUST00000192952 Gm37920 TEC Interval_167959 chr9 74975654 74976564 + 0 NA promoter-TSS (ENSMUSG00000034858.16) protein_coding-promoter-TSS (ENSMUSG00000034858.16) 23225 ENSMUSG00000034858.16 ENSMUSG00000034858 ENSMUST00000081746 Fam214a protein_coding Interval_152802 chr7 137835448 137835896 + 0 NA Intergenic Intergenic 101406 ENSMUSG00000110090.1 ENSMUSG00000110090 ENSMUST00000209434 Gm45682 lincRNA Interval_149754 chr7 101281406 101283426 + 0 NA intron (ENSMUSG00000030691.15, intron 19 of 19) protein_coding-intron (ENSMUSG00000030691.15, intron 20 of 20) 19633 ENSMUSG00000047767.17 ENSMUSG00000047767 ENSMUST00000209093 Atg16l2 protein_coding Interval_16707 chr10 67119150 67119770 + 0 NA intron (ENSMUSG00000037876.17, intron 1 of 9) protein_coding-intron (ENSMUSG00000037876.17, intron 1 of 1) -66288 ENSMUSG00000037876.17 ENSMUSG00000037876 ENSMUST00000173236 Jmjd1c protein_coding Interval_67956 chr16 60747336 60748481 + 0 NA Intergenic Intergenic -48617 ENSMUSG00000098819.1 ENSMUSG00000098819 ENSMUST00000184926 Gm27784 miRNA Interval_173326 chrX 79717592 79718254 + 0 NA Intergenic Intergenic -82341 ENSMUSG00000046942.17 ENSMUSG00000046942 ENSMUST00000052283 Mageb16 protein_coding Interval_94952 chr2 102129875 102130843 + 0 NA intron (ENSMUSG00000048058.17, intron 1 of 5) protein_coding-intron (ENSMUSG00000048058.17, intron 1 of 5) 7760 ENSMUSG00000048058.17 ENSMUSG00000048058 ENSMUST00000127888 Ldlrad3 protein_coding Interval_111768 chr4 28297212 28297460 + 0 NA Intergenic Intergenic -56447 ENSMUSG00000082703.1 ENSMUSG00000082703 ENSMUST00000118918 Gm11907 processed_pseudogene Interval_43774 chr13 36309295 36309565 + 0 NA intron (ENSMUSG00000021420.13, intron 4 of 7) protein_coding-intron (ENSMUSG00000021420.13, intron 4 of 6) -17528 ENSMUSG00000021420.13 ENSMUSG00000021420 ENSMUST00000225048 Fars2 protein_coding Interval_96839 chr2 128786411 128786925 + 0 NA intron (ENSMUSG00000014361.5, intron 7 of 10) protein_coding-intron (ENSMUSG00000014361.5, intron 15 of 18) 6292 ENSMUSG00000087785.1 ENSMUSG00000087785 ENSMUST00000157160 Gm23172 snoRNA Interval_139753 chr6 108398808 108399152 + 0 NA intron (ENSMUSG00000030102.11, intron 9 of 10) protein_coding-intron (ENSMUSG00000030102.11, intron 30 of 61) 11546 ENSMUSG00000030102.11 ENSMUSG00000030102 ENSMUST00000205005 Itpr1 protein_coding Interval_61887 chr15 84957944 84958805 + 0 NA intron (ENSMUSG00000036046.14, intron 2 of 3) protein_coding-intron (ENSMUSG00000036046.14, intron 2 of 9) -6751 ENSMUSG00000080441.1 ENSMUSG00000080441 ENSMUST00000116791 Mir1249 miRNA Interval_94872 chr2 98843939 98844909 + 0 NA Intergenic Intergenic -177123 ENSMUSG00000075014.1 ENSMUSG00000075014 ENSMUST00000099683 Gm10800 protein_coding Interval_84176 chr19 8470928 8471447 + 0 NA Intergenic Intergenic -66082 ENSMUSG00000052562.15 ENSMUSG00000052562 ENSMUST00000120540 Slc22a30 protein_coding Interval_108952 chr3 133563500 133563758 + 0 NA intron (ENSMUSG00000105085.1, intron 1 of 2) antisense-intron (ENSMUSG00000105085.1, intron 1 of 2) 16272 ENSMUSG00000105595.1 ENSMUSG00000105595 ENSMUST00000197855 Gm49316 processed_pseudogene Interval_133399 chr6 4661063 4661250 + 0 NA Intergenic Intergenic 30029 ENSMUSG00000015189.12 ENSMUSG00000015189 ENSMUST00000204372 Casd1 protein_coding Interval_170905 chr9 111897996 111898506 + 0 NA Intergenic Intergenic 20415 ENSMUSG00000111054.1 ENSMUSG00000111054 ENSMUST00000215688 4930545L08Rik lincRNA Interval_162397 chr8 127991038 127991740 + 0 NA Intergenic Intergenic 286836 ENSMUSG00000099326.1 ENSMUSG00000099326 ENSMUST00000184910 Mir21c miRNA Interval_117859 chr4 126685553 126685996 + 0 NA intron (ENSMUSG00000028837.8, intron 2 of 4) protein_coding-intron (ENSMUSG00000028837.8, intron 2 of 5) 8070 ENSMUSG00000028837.8 ENSMUSG00000028837 ENSMUST00000150372 Psmb2 protein_coding Interval_21535 chr10 129340596 129341400 + 0 NA Intergenic Intergenic -7852 ENSMUSG00000095075.2 ENSMUSG00000095075 ENSMUST00000077024 Olfr782 protein_coding Interval_87598 chr19 53653774 53654762 + 0 NA Intergenic Intergenic 10910 ENSMUSG00000024974.10 ENSMUSG00000024974 ENSMUST00000171083 Smc3 protein_coding Interval_73365 chr17 36786322 36786847 + 0 NA Intergenic Intergenic 13674 ENSMUSG00000037246.6 ENSMUSG00000037246 ENSMUST00000041531 H2-M10.5 protein_coding Interval_27589 chr11 68897052 68897383 + 0 NA Intergenic Intergenic -4418 ENSMUSG00000060938.14 ENSMUSG00000060938 ENSMUST00000138973 Rpl26 protein_coding Interval_151026 chr7 117908751 117908992 + 0 NA Intergenic Intergenic 132077 ENSMUSG00000088116.1 ENSMUSG00000088116 ENSMUST00000157491 Gm24063 miRNA Interval_161156 chr8 117859727 117860427 + 0 NA Intergenic Intergenic 58015 ENSMUSG00000074065.4 ENSMUSG00000074065 ENSMUST00000098368 Gm10617 pseudogene Interval_168514 chr9 82908755 82909038 + 0 NA promoter-TSS (ENSMUSG00000032253.13) protein_coding-promoter-TSS (ENSMUSG00000032253.13) -7783 ENSMUSG00000032253.13 ENSMUSG00000032253 ENSMUST00000190838 Phip protein_coding Interval_168169 chr9 77741536 77742192 + 0 NA Intergenic Intergenic -8596 ENSMUSG00000111014.1 ENSMUSG00000111014 ENSMUST00000215539 Gm47795 lincRNA Interval_69151 chr16 90986115 90986348 + 0 NA exon (ENSMUSG00000085279.1, exon 2 of 2) antisense-exon (ENSMUSG00000085279.1, exon 2 of 2) 2324 ENSMUSG00000085279.1 ENSMUSG00000085279 ENSMUST00000123318 Gm15965 antisense Interval_93122 chr2 70412887 70414321 + 0 NA intron (ENSMUSG00000042064.13, intron 31 of 33) protein_coding-intron (ENSMUSG00000042064.13, intron 32 of 34) -45378 ENSMUSG00000047965.9 ENSMUSG00000047965 ENSMUST00000140507 Rpl9-ps7 processed_pseudogene Interval_56998 chr15 3748021 3749059 + 0 NA Intergenic Intergenic -1665 ENSMUSG00000098177.1 ENSMUSG00000098177 ENSMUST00000181990 Gm4823 processed_pseudogene Interval_167385 chr9 68151741 68152738 + 0 NA Intergenic Intergenic -82790 ENSMUSG00000101345.1 ENSMUSG00000101345 ENSMUST00000186992 Gm28195 lincRNA Interval_174202 chrX 139516029 139516618 + 0 NA intron (ENSMUSG00000042498.16, intron 10 of 13) protein_coding-intron (ENSMUSG00000042498.16, intron 10 of 13) 35952 ENSMUSG00000042498.16 ENSMUSG00000042498 ENSMUST00000113030 Radx protein_coding Interval_18410 chr10 85597676 85599341 + 0 NA promoter-TSS (ENSMUSG00000020042.15) protein_coding-promoter-TSS (ENSMUSG00000020042.15) -46695 ENSMUSG00000020042.15 ENSMUSG00000020042 ENSMUST00000145433 Btbd11 protein_coding Interval_54259 chr14 66953209 66953705 + 0 NA Intergenic Intergenic -13725 ENSMUSG00000114558.1 ENSMUSG00000114558 ENSMUST00000224795 Gm9570 processed_pseudogene Interval_31764 chr11 102709410 102709908 + 0 NA Intergenic Intergenic -11925 ENSMUSG00000020925.16 ENSMUSG00000020925 ENSMUST00000138147 Ccdc43 protein_coding Interval_50360 chr14 12046436 12046862 + 0 NA intron (ENSMUSG00000021745.14, intron 5 of 29) protein_coding-intron (ENSMUSG00000021745.14, intron 5 of 29) -65441 ENSMUSG00000085883.2 ENSMUSG00000085883 ENSMUST00000151564 Gm3848 antisense Interval_61299 chr15 80693523 80693819 + 0 NA TTS (ENSMUSG00000116220.1) antisense-TTS (ENSMUSG00000116220.1) 3939 ENSMUSG00000116220.1 ENSMUSG00000116220 ENSMUST00000230325 A430088P11Rik antisense Interval_71133 chr17 19430259 19430509 + 0 NA intron (ENSMUSG00000116984.1, intron 2 of 7) lincRNA-intron (ENSMUSG00000116984.1, intron 2 of 7) 14953 ENSMUSG00000116984.1 ENSMUSG00000116984 ENSMUST00000231951 4930549P19Rik lincRNA Interval_11460 chr1 182010046 182010275 + 0 NA intron (ENSMUSG00000022995.16, intron 1 of 13) protein_coding-intron (ENSMUSG00000022995.16, intron 1 of 14) -2474 ENSMUSG00000102760.1 ENSMUSG00000102760 ENSMUST00000191734 Gm37258 TEC Interval_78056 chr18 7583077 7584412 + 0 NA intron (ENSMUSG00000057440.8, intron 3 of 15) protein_coding-intron (ENSMUSG00000057440.8, intron 1 of 16) 2228 ENSMUSG00000094334.2 ENSMUSG00000094334 ENSMUST00000072582 Fabp5l2 processed_pseudogene Interval_147875 chr7 74844449 74845367 + 0 NA intron (ENSMUSG00000108652.1, intron 2 of 2) lincRNA-intron (ENSMUSG00000108652.1, intron 2 of 2) 6490 ENSMUSG00000108642.1 ENSMUSG00000108642 ENSMUST00000206840 Gm44903 processed_pseudogene Interval_156047 chr8 43203715 43203920 + 0 NA Intergenic Intergenic 3849 ENSMUSG00000109974.1 ENSMUSG00000109974 ENSMUST00000209342 Gm2221 processed_pseudogene Interval_92300 chr2 58537921 58538792 + 0 NA promoter-TSS (ENSMUSG00000026836.15) protein_coding-promoter-TSS (ENSMUSG00000026836.15) -22084 ENSMUSG00000026836.15 ENSMUSG00000026836 ENSMUST00000126407 Acvr1 protein_coding Interval_123909 chr5 36451262 36451655 + 0 NA intron (ENSMUSG00000039563.6, intron 2 of 2) lincRNA-intron (ENSMUSG00000039563.6, intron 2 of 2) 13395 ENSMUSG00000039563.6 ENSMUSG00000039563 ENSMUST00000151434 2210406O10Rik lincRNA Interval_126628 chr5 91198283 91199063 + 0 NA Intergenic Intergenic 19331 ENSMUSG00000094938.1 ENSMUSG00000094938 ENSMUST00000178688 Gm23092 snRNA Interval_126614 chr5 90938339 90938616 + 0 NA TTS (ENSMUSG00000029376.8) protein_coding-TTS (ENSMUSG00000029376.8) 7360 ENSMUSG00000029376.8 ENSMUSG00000029376 ENSMUST00000201851 Mthfd2l protein_coding Interval_17313 chr10 75794906 75795730 + 0 NA intron (ENSMUSG00000001663.10, intron 2 of 3) protein_coding-intron (ENSMUSG00000001663.10, intron 2 of 4) 2413 ENSMUSG00000001663.10 ENSMUSG00000001663 ENSMUST00000139724 Gstt1 protein_coding Interval_35411 chr12 21431913 21432544 + 0 NA Intergenic Intergenic 14349 ENSMUSG00000097055.2 ENSMUSG00000097055 ENSMUST00000227598 Gm4419 antisense Interval_140417 chr6 117952076 117952710 + 0 NA Intergenic Intergenic -16440 ENSMUSG00000004988.9 ENSMUSG00000004988 ENSMUST00000203842 Fxyd4 protein_coding Interval_41285 chr12 112450693 112451404 + 0 NA Intergenic Intergenic -15710 ENSMUSG00000113189.1 ENSMUSG00000113189 ENSMUST00000223085 B020018J22Rik lincRNA Interval_27988 chr11 71995587 71996863 + 0 NA Intergenic Intergenic -26530 ENSMUSG00000080577.1 ENSMUSG00000080577 ENSMUST00000116927 Gm23226 snRNA Interval_210 KQ030492.1 930 1129 + 0 NA NA NA NA NA Interval_66601 chr16 35564385 35564861 + 0 NA intron (ENSMUSG00000052133.16, intron 1 of 5) protein_coding-intron (ENSMUSG00000052133.16, intron 1 of 21) 8933 ENSMUSG00000052192.5 ENSMUSG00000052192 ENSMUST00000143451 Gm5963 processed_pseudogene Interval_37748 chr12 71686609 71687245 + 0 NA intron (ENSMUSG00000114028.1, intron 2 of 5) lincRNA-intron (ENSMUSG00000114028.1, intron 2 of 5) -37725 ENSMUSG00000084463.1 ENSMUSG00000084463 ENSMUST00000122514 Gm22959 misc_RNA Interval_42611 chr13 16763517 16764185 + 0 NA Intergenic Intergenic 95621 ENSMUSG00000087872.1 ENSMUSG00000087872 ENSMUST00000157247 Gm26098 misc_RNA Interval_34268 chr11 121838245 121838450 + 0 NA intron (ENSMUSG00000039198.8, intron 3 of 3) protein_coding-intron (ENSMUSG00000039198.8, intron 3 of 3) 8100 ENSMUSG00000039198.8 ENSMUSG00000039198 ENSMUST00000036690 Ptchd3 protein_coding Interval_16984 chr10 70286903 70287309 + 0 NA exon (ENSMUSG00000052426.4, exon 1 of 2) pseudogene-exon (ENSMUSG00000052426.4, exon 1 of 2) 1070 ENSMUSG00000052426.4 ENSMUSG00000052426 ENSMUST00000064271 Gm9877 pseudogene Interval_97813 chr2 144227184 144227773 + 0 NA Intergenic Intergenic -15763 ENSMUSG00000085127.1 ENSMUSG00000085127 ENSMUST00000146746 4930444E06Rik antisense Interval_138140 chr6 85423590 85424411 + 0 NA promoter-TSS (ENSMUSG00000068302.8) protein_coding-promoter-TSS (ENSMUSG00000068302.8) -68 ENSMUSG00000068302.8 ENSMUSG00000068302 ENSMUST00000174469 Noto protein_coding Interval_31669 chr11 102155729 102156878 + 0 NA promoter-TSS (ENSMUSG00000020921.6) protein_coding-promoter-TSS (ENSMUSG00000020921.6) 44 ENSMUSG00000020921.6 ENSMUSG00000020921 ENSMUST00000136434 Tmem101 protein_coding Interval_85028 chr19 21667167 21668083 + 0 NA intron (ENSMUSG00000047368.4, intron 1 of 3) protein_coding-intron (ENSMUSG00000047368.4, intron 1 of 3) -13009 ENSMUSG00000047368.4 ENSMUSG00000047368 ENSMUST00000236549 Abhd17b protein_coding Interval_26632 chr11 59330492 59331325 + 0 NA exon (ENSMUSG00000000126.11, exon 4 of 4) protein_coding-exon (ENSMUSG00000000126.11, exon 4 of 4) 6238 ENSMUSG00000093572.1 ENSMUSG00000093572 ENSMUST00000177002 Gm24756 miRNA Interval_104549 chr3 67606029 67606588 + 0 NA TTS (ENSMUSG00000103206.1) processed_pseudogene-TTS (ENSMUSG00000103206.1) 1473 ENSMUSG00000103206.1 ENSMUSG00000103206 ENSMUST00000194852 Gm8515 processed_pseudogene Interval_161218 chr8 118766202 118766802 + 0 NA intron (ENSMUSG00000031841.19, intron 4 of 7) protein_coding-intron (ENSMUSG00000031841.19, intron 4 of 13) 39602 ENSMUSG00000087707.1 ENSMUSG00000087707 ENSMUST00000157082 Gm22999 snoRNA Interval_9399 chr1 156808473 156809250 + 0 NA exon (ENSMUSG00000026594.14, exon 20 of 20) protein_coding-exon (ENSMUSG00000026594.14, exon 20 of 20) 15349 ENSMUSG00000046057.4 ENSMUSG00000046057 ENSMUST00000121352 Gm15428 processed_pseudogene Interval_62533 chr15 94471438 94471683 + 0 NA Intergenic Intergenic -67302 ENSMUSG00000022449.14 ENSMUSG00000022449 ENSMUST00000128797 Adamts20 protein_coding Interval_44055 chr13 40605299 40607017 + 0 NA intron (ENSMUSG00000114198.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000114198.1, intron 1 of 1) 321 ENSMUSG00000114198.1 ENSMUSG00000114198 ENSMUST00000223618 Gm47039 lincRNA Interval_94552 chr2 92164084 92164799 + 0 NA intron (ENSMUSG00000058318.15, intron 1 of 16) protein_coding-intron (ENSMUSG00000058318.15, intron 1 of 15) -19861 ENSMUSG00000058318.15 ENSMUSG00000058318 ENSMUST00000161044 Phf21a protein_coding Interval_21446 chr10 128644199 128646842 + 0 NA promoter-TSS (ENSMUSG00000097372.1) lincRNA-promoter-TSS (ENSMUSG00000097372.1) -364 ENSMUSG00000097372.1 ENSMUSG00000097372 ENSMUST00000180875 Gm26876 lincRNA Interval_122682 chr5 24632008 24632238 + 0 NA Intergenic Intergenic -8987 ENSMUSG00000028949.13 ENSMUSG00000028949 ENSMUST00000199393 Smarcd3 protein_coding Interval_76973 chr17 85276900 85277128 + 0 NA intron (ENSMUSG00000071037.6, intron 3 of 10) protein_coding-intron (ENSMUSG00000071037.6, intron 3 of 10) 186408 ENSMUSG00000071037.6 ENSMUSG00000071037 ENSMUST00000234501 Camkmt protein_coding Interval_130804 chr5 130806478 130806948 + 0 NA intron (ENSMUSG00000060371.12, intron 4 of 5) protein_coding-intron (ENSMUSG00000060371.12, intron 5 of 6) 24012 ENSMUSG00000088972.2 ENSMUSG00000088972 ENSMUST00000158347 Gm23761 snRNA Interval_107379 chr3 107074541 107074724 + 0 NA intron (ENSMUSG00000098108.7, intron 1 of 5) antisense-intron (ENSMUSG00000098108.7, intron 1 of 5) -16250 ENSMUSG00000050179.3 ENSMUSG00000050179 ENSMUST00000182132 A930002I21Rik lincRNA Interval_153209 chr7 142435353 142436000 + 0 NA intron (ENSMUSG00000031098.18, intron 1 of 5) protein_coding-intron (ENSMUSG00000031098.18, intron 1 of 8) -3684 ENSMUSG00000031098.18 ENSMUSG00000031098 ENSMUST00000210746 Syt8 protein_coding Interval_2975 chr1 51795240 51796355 + 0 NA promoter-TSS (ENSMUSG00000018417.14) protein_coding-promoter-TSS (ENSMUSG00000018417.14) 53321 ENSMUSG00000101724.1 ENSMUSG00000101724 ENSMUST00000186428 Gm29453 sense_intronic Interval_151602 chr7 124960055 124960297 + 0 NA Intergenic Intergenic 52567 ENSMUSG00000108623.1 ENSMUSG00000108623 ENSMUST00000205944 Gm45092 lincRNA Interval_56657 chr14 121214633 121215365 + 0 NA intron (ENSMUSG00000025555.14, intron 2 of 7) protein_coding-intron (ENSMUSG00000025555.14, intron 3 of 26) -33707 ENSMUSG00000085133.2 ENSMUSG00000085133 ENSMUST00000130256 B930095G15Rik sense_intronic Interval_16574 chr10 64096194 64096792 + 0 NA intron (ENSMUSG00000060843.11, intron 7 of 17) protein_coding-intron (ENSMUSG00000060843.11, intron 6 of 16) -6246 ENSMUSG00000042846.8 ENSMUSG00000042846 ENSMUST00000133588 Lrrtm3 protein_coding Interval_71202 chr17 21107800 21107997 + 0 NA Intergenic Intergenic 7637 ENSMUSG00000102080.2 ENSMUSG00000102080 ENSMUST00000232348 Gm5092 lincRNA Interval_5709 chr1 91107503 91107972 + 0 NA intron (ENSMUSG00000026305.15, intron 6 of 7) protein_coding-intron (ENSMUSG00000026305.15, intron 7 of 12) -37352 ENSMUSG00000070732.2 ENSMUSG00000070732 ENSMUST00000185229 Rbm44 protein_coding Interval_134043 chr6 17977142 17977570 + 0 NA Intergenic Intergenic 53229 ENSMUSG00000010797.6 ENSMUSG00000010797 ENSMUST00000010941 Wnt2 protein_coding Interval_64043 chr16 6211362 6211556 + 0 NA intron (ENSMUSG00000008658.16, intron 2 of 11) protein_coding-intron (ENSMUSG00000008658.16, intron 2 of 11) 235874 ENSMUSG00000101481.1 ENSMUSG00000101481 ENSMUST00000190515 1700123O21Rik sense_intronic Interval_61749 chr15 83794537 83794891 + 0 NA intron (ENSMUSG00000041708.12, intron 1 of 4) protein_coding-intron (ENSMUSG00000041708.12, intron 2 of 6) 2700 ENSMUSG00000041708.12 ENSMUSG00000041708 ENSMUST00000148868 Mpped1 protein_coding Interval_51821 chr14 32504680 32504945 + 0 NA Intergenic Intergenic -38855 ENSMUSG00000021919.8 ENSMUSG00000021919 ENSMUST00000228511 Chat protein_coding Interval_66000 chr16 30820666 30822335 + 0 NA Intergenic Intergenic 7338 ENSMUSG00000095791.1 ENSMUSG00000095791 ENSMUST00000179690 Gm26295 snRNA Interval_36706 chr12 52298215 52298420 + 0 NA intron (ENSMUSG00000035142.18, intron 8 of 10) protein_coding-intron (ENSMUSG00000035142.18, intron 8 of 10) 122230 ENSMUSG00000035142.18 ENSMUSG00000035142 ENSMUST00000162111 Nubpl protein_coding Interval_160676 chr8 111544007 111544280 + 0 NA intron (ENSMUSG00000033545.14, intron 1 of 3) protein_coding-intron (ENSMUSG00000033545.14, intron 1 of 3) 6565 ENSMUSG00000033545.14 ENSMUSG00000033545 ENSMUST00000173819 Znrf1 protein_coding Interval_35253 chr12 19043872 19045032 + 0 NA promoter-TSS (ENSMUSG00000114188.1) lincRNA-promoter-TSS (ENSMUSG00000114188.1) -254 ENSMUSG00000114188.1 ENSMUSG00000114188 ENSMUST00000222330 Gm40849 lincRNA Interval_82983 chr18 80160342 80160669 + 0 NA intron (ENSMUSG00000118373.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000118373.1, intron 1 of 1) 2057 ENSMUSG00000118373.1 ENSMUSG00000118373 ENSMUST00000237583 Gm41787 lincRNA Interval_94109 chr2 84343689 84343892 + 0 NA intron (ENSMUSG00000059588.13, intron 9 of 12) protein_coding-intron (ENSMUSG00000059588.13, intron 13 of 15) -25479 ENSMUSG00000084198.1 ENSMUSG00000084198 ENSMUST00000119708 Gm13711 unprocessed_pseudogene Interval_18068 chr10 82075174 82075965 + 0 NA Intergenic Intergenic -7784 ENSMUSG00000112160.1 ENSMUSG00000112160 ENSMUST00000220287 BC024063 protein_coding Interval_45715 chr13 57236334 57237132 + 0 NA Intergenic Intergenic -3114 ENSMUSG00000114363.1 ENSMUSG00000114363 ENSMUST00000225562 Gm48174 processed_pseudogene Interval_132852 chr5 148324775 148326376 + 0 NA Intergenic Intergenic 74216 ENSMUSG00000041313.14 ENSMUSG00000041313 ENSMUST00000201348 Slc7a1 protein_coding Interval_18551 chr10 87492330 87495062 + 0 NA promoter-TSS (ENSMUSG00000020052.9) protein_coding-promoter-TSS (ENSMUSG00000020052.9) -36 ENSMUSG00000020052.9 ENSMUSG00000020052 ENSMUST00000020243 Ascl1 protein_coding Interval_129888 chr5 122925048 122926562 + 0 NA intron (ENSMUSG00000029475.17, intron 10 of 12) protein_coding-intron (ENSMUSG00000029475.17, intron 11 of 22) -4257 ENSMUSG00000029475.17 ENSMUSG00000029475 ENSMUST00000150543 Kdm2b protein_coding Interval_100828 chr2 172758634 172758864 + 0 NA Intergenic Intergenic 105592 ENSMUSG00000093160.1 ENSMUSG00000093160 ENSMUST00000175419 Gm22773 miRNA Interval_56548 chr14 120277710 120279183 + 0 NA intron (ENSMUSG00000022139.17, intron 1 of 1) protein_coding-intron (ENSMUSG00000022139.17, intron 1 of 8) -100795 ENSMUSG00000022139.17 ENSMUSG00000022139 ENSMUST00000227153 Mbnl2 protein_coding Interval_124155 chr5 38708846 38709836 + 0 NA intron (ENSMUSG00000039315.15, intron 18 of 18) protein_coding-intron (ENSMUSG00000039315.15, intron 18 of 18) -9529 ENSMUSG00000077273.1 ENSMUSG00000077273 ENSMUST00000104085 Gm22779 snRNA Interval_57059 chr15 5196197 5196431 + 0 NA intron (ENSMUSG00000022151.16, intron 2 of 3) protein_coding-intron (ENSMUSG00000022151.16, intron 2 of 4) 10156 ENSMUSG00000022151.16 ENSMUSG00000022151 ENSMUST00000141167 Ttc33 protein_coding Interval_104168 chr3 59477840 59478478 + 0 NA Intergenic Intergenic -4064 ENSMUSG00000103211.1 ENSMUSG00000103211 ENSMUST00000195330 Gm38288 processed_pseudogene Interval_21709 chr11 3849273 3849931 + 0 NA intron (ENSMUSG00000020435.17, intron 1 of 2) protein_coding-intron (ENSMUSG00000020435.17, intron 1 of 13) -23353 ENSMUSG00000084077.1 ENSMUSG00000084077 ENSMUST00000121172 Gm11952 processed_pseudogene Interval_40988 chr12 110463894 110465652 + 0 NA intron (ENSMUSG00000017843.14, intron 2 of 12) protein_coding-intron (ENSMUSG00000017843.14, intron 2 of 7) 17466 ENSMUSG00000017843.14 ENSMUSG00000017843 ENSMUST00000221074 Ppp2r5c protein_coding Interval_92892 chr2 68234372 68235519 + 0 NA intron (ENSMUSG00000027030.15, intron 1 of 2) protein_coding-intron (ENSMUSG00000027030.15, intron 16 of 17) 151736 ENSMUSG00000027030.15 ENSMUSG00000027030 ENSMUST00000149581 Stk39 protein_coding Interval_74213 chr17 47503698 47504400 + 0 NA Intergenic Intergenic -1777 ENSMUSG00000023980.7 ENSMUSG00000023980 ENSMUST00000233675 Taf8 protein_coding Interval_167091 chr9 65193199 65193505 + 0 NA Intergenic Intergenic -2001 ENSMUSG00000032392.11 ENSMUSG00000032392 ENSMUST00000213766 Parp16 protein_coding Interval_63696 chr15 102920268 102922285 + 0 NA exon (ENSMUSG00000001655.6, exon 1 of 2) protein_coding-exon (ENSMUSG00000001655.6, exon 1 of 2) 173 ENSMUSG00000001655.6 ENSMUSG00000001655 ENSMUST00000001700 Hoxc13 protein_coding Interval_26915 chr11 61539301 61539569 + 0 NA intron (ENSMUSG00000001036.17, intron 3 of 10) protein_coding-intron (ENSMUSG00000001036.17, intron 2 of 9) 11680 ENSMUSG00000085459.1 ENSMUSG00000085459 ENSMUST00000138136 Gm12272 antisense Interval_64139 chr16 8684851 8687426 + 0 NA Intergenic Intergenic 3308 ENSMUSG00000107252.1 ENSMUSG00000107252 ENSMUST00000202157 Gm5767 protein_coding Interval_130205 chr5 124922757 124924015 + 0 NA Intergenic Intergenic 49234 ENSMUSG00000079215.8 ENSMUSG00000079215 ENSMUST00000134473 Zfp664 protein_coding Interval_34882 chr12 12937183 12937742 + 0 NA exon (ENSMUSG00000037169.15, exon 3 of 3) protein_coding-exon (ENSMUSG00000037169.15, exon 3 of 3) 4363 ENSMUSG00000037169.15 ENSMUSG00000037169 ENSMUST00000151534 Mycn protein_coding Interval_136443 chr6 54542132 54542424 + 0 NA intron (ENSMUSG00000019124.10, intron 2 of 2) protein_coding-intron (ENSMUSG00000019124.10, intron 2 of 7) -32917 ENSMUSG00000019124.10 ENSMUSG00000019124 ENSMUST00000140235 Scrn1 protein_coding Interval_80563 chr18 44263823 44264288 + 0 NA Intergenic Intergenic -6072 ENSMUSG00000038071.3 ENSMUSG00000038071 ENSMUST00000042747 Npy6r protein_coding Interval_173372 chrX 85566212 85566447 + 0 NA Intergenic Intergenic -7710 ENSMUSG00000035476.9 ENSMUSG00000035476 ENSMUST00000146063 Tab3 protein_coding Interval_63785 chr15 103395287 103395511 + 0 NA Intergenic Intergenic 17328 ENSMUSG00000104327.1 ENSMUSG00000104327 ENSMUST00000193409 Gm37322 TEC Interval_18975 chr10 93515292 93516536 + 0 NA intron (ENSMUSG00000020017.14, intron 4 of 4) protein_coding-intron (ENSMUSG00000020017.14, intron 18 of 18) 14789 ENSMUSG00000020017.14 ENSMUSG00000020017 ENSMUST00000152883 Hal protein_coding Interval_79148 chr18 25022096 25022817 + 0 NA intron (ENSMUSG00000034295.10, intron 11 of 26) protein_coding-intron (ENSMUSG00000034295.10, intron 11 of 26) 146238 ENSMUSG00000024269.11 ENSMUSG00000024269 ENSMUST00000115817 Tpgs2 protein_coding Interval_53859 chr14 62851385 62851575 + 0 NA intron (ENSMUSG00000014547.10, intron 1 of 3) protein_coding-intron (ENSMUSG00000014547.10, intron 1 of 11) 13759 ENSMUSG00000099245.1 ENSMUSG00000099245 ENSMUST00000184011 Mir8098 miRNA Interval_147211 chr7 64568953 64570102 + 0 NA intron (ENSMUSG00000030519.14, intron 2 of 2) protein_coding-intron (ENSMUSG00000030519.14, intron 2 of 14) 40102 ENSMUSG00000108721.1 ENSMUSG00000108721 ENSMUST00000206978 Gm44721 TEC Interval_85849 chr19 32343990 32345133 + 0 NA intron (ENSMUSG00000040451.18, intron 2 of 2) protein_coding-intron (ENSMUSG00000040451.18, intron 2 of 9) -44655 ENSMUSG00000097787.2 ENSMUSG00000097787 ENSMUST00000181612 2700046G09Rik bidirectional_promoter_lncRNA Interval_20687 chr10 120239244 120239758 + 0 NA Intergenic Intergenic 12399 ENSMUSG00000020224.15 ENSMUSG00000020224 ENSMUST00000130198 Llph protein_coding Interval_118897 chr4 134342370 134345082 + 0 NA promoter-TSS (ENSMUSG00000028836.14) protein_coding-promoter-TSS (ENSMUSG00000028836.14) 520 ENSMUSG00000028836.14 ENSMUSG00000028836 ENSMUST00000081094 Slc30a2 protein_coding Interval_4858 chr1 80314447 80316838 + 0 NA intron (ENSMUSG00000004364.14, intron 1 of 14) protein_coding-intron (ENSMUSG00000004364.14, intron 2 of 15) 12352 ENSMUSG00000103525.1 ENSMUSG00000103525 ENSMUST00000192816 Gm37262 TEC Interval_116173 chr4 108370204 108370732 + 0 NA intron (ENSMUSG00000059816.5, intron 2 of 2) protein_coding-intron (ENSMUSG00000059816.5, intron 2 of 2) 12881 ENSMUSG00000059816.5 ENSMUSG00000059816 ENSMUST00000053157 Shisal2a protein_coding Interval_86601 chr19 41980524 41982162 + 0 NA promoter-TSS (ENSMUSG00000025159.8) protein_coding-promoter-TSS (ENSMUSG00000025159.8) -204 ENSMUSG00000025159.8 ENSMUSG00000025159 ENSMUST00000169765 Mms19 protein_coding Interval_105833 chr3 89598222 89599452 + 0 NA intron (ENSMUSG00000000794.9, intron 2 of 7) protein_coding-intron (ENSMUSG00000000794.9, intron 2 of 7) -63681 ENSMUSG00000000794.9 ENSMUSG00000000794 ENSMUST00000124584 Kcnn3 protein_coding Interval_154472 chr8 18512336 18512629 + 0 NA TTS (ENSMUSG00000077675.1) snoRNA-TTS (ENSMUSG00000077675.1) 163 ENSMUSG00000077675.1 ENSMUSG00000077675 ENSMUST00000104487 Gm24469 snoRNA Interval_53555 chr14 59109834 59110345 + 0 NA Intergenic Intergenic -22971 ENSMUSG00000114289.1 ENSMUSG00000114289 ENSMUST00000223800 Gm48453 lincRNA Interval_3545 chr1 59471970 59473575 + 0 NA Intergenic Intergenic -9652 ENSMUSG00000041075.8 ENSMUSG00000041075 ENSMUST00000114246 Fzd7 protein_coding Interval_167351 chr9 67699863 67700493 + 0 NA promoter-TSS (ENSMUSG00000111819.1) processed_pseudogene-promoter-TSS (ENSMUSG00000111819.1) -3 ENSMUSG00000111819.1 ENSMUSG00000111819 ENSMUST00000216655 Gm47110 processed_pseudogene Interval_97937 chr2 145905613 145906277 + 0 NA intron (ENSMUSG00000002728.14, intron 1 of 3) protein_coding-intron (ENSMUSG00000002728.14, intron 1 of 5) 2688 ENSMUSG00000002728.14 ENSMUSG00000002728 ENSMUST00000129502 Naa20 protein_coding Interval_34414 chr12 3942036 3943125 + 0 NA Intergenic Intergenic -10540 ENSMUSG00000112271.1 ENSMUSG00000112271 ENSMUST00000220237 Gm9088 processed_pseudogene Interval_142186 chr6 137962917 137963476 + 0 NA Intergenic Intergenic -43225 ENSMUSG00000094466.1 ENSMUSG00000094466 ENSMUST00000177773 Gm24308 miRNA Interval_137455 chr6 72552427 72553567 + 0 NA promoter-TSS (ENSMUSG00000056737.14) protein_coding-promoter-TSS (ENSMUSG00000056737.14) 3539 ENSMUSG00000056737.14 ENSMUSG00000056737 ENSMUST00000127770 Capg protein_coding Interval_87882 chr19 56858098 56858470 + 0 NA intron (ENSMUSG00000025081.13, intron 18 of 25) protein_coding-intron (ENSMUSG00000025081.13, intron 18 of 25) -15965 ENSMUSG00000025082.8 ENSMUSG00000025082 ENSMUST00000026068 Vwa2 protein_coding Interval_146839 chr7 52915921 52916369 + 0 NA Intergenic Intergenic -10925 ENSMUSG00000070203.1 ENSMUSG00000070203 ENSMUST00000093693 Gm22444 snRNA Interval_79574 chr18 33834800 33836756 + 0 NA intron (ENSMUSG00000024376.7, intron 13 of 23) protein_coding-intron (ENSMUSG00000024376.7, intron 13 of 23) 40614 ENSMUSG00000092819.1 ENSMUSG00000092819 ENSMUST00000175078 Gm23639 snoRNA Interval_5632 chr1 90444692 90444938 + 0 NA Intergenic Intergenic 9686 ENSMUSG00000101997.1 ENSMUSG00000101997 ENSMUST00000187630 Gm28722 lincRNA Interval_47492 chr13 85288278 85289834 + 0 NA promoter-TSS (ENSMUSG00000021549.14) protein_coding-promoter-TSS (ENSMUSG00000021549.14) 74 ENSMUSG00000021549.14 ENSMUSG00000021549 ENSMUST00000132711 Rasa1 protein_coding Interval_37990 chr12 73667682 73668166 + 0 NA intron (ENSMUSG00000021108.18, intron 3 of 14) protein_coding-intron (ENSMUSG00000021108.18, intron 2 of 13) 83128 ENSMUSG00000021108.18 ENSMUSG00000021108 ENSMUST00000220898 Prkch protein_coding Interval_90889 chr2 33230625 33232051 + 0 NA intron (ENSMUSG00000004105.8, intron 2 of 2) protein_coding-intron (ENSMUSG00000004105.8, intron 2 of 4) 15221 ENSMUSG00000004105.8 ENSMUSG00000004105 ENSMUST00000193373 Angptl2 protein_coding Interval_43720 chr13 35769695 35770437 + 0 NA intron (ENSMUSG00000059288.14, intron 1 of 2) protein_coding-intron (ENSMUSG00000059288.14, intron 3 of 9) 6830 ENSMUSG00000114373.1 ENSMUSG00000114373 ENSMUST00000224745 Gm48708 antisense Interval_51776 chr14 32133740 32134851 + 0 NA Intergenic Intergenic -13292 ENSMUSG00000021907.13 ENSMUSG00000021907 ENSMUST00000130397 Msmb protein_coding Interval_51952 chr14 34200755 34202388 + 0 NA promoter-TSS (ENSMUSG00000071531.3) protein_coding-promoter-TSS (ENSMUSG00000071531.3) 62 ENSMUSG00000071531.3 ENSMUSG00000071531 ENSMUST00000096019 Gprin2 protein_coding Interval_151667 chr7 125854516 125855085 + 0 NA intron (ENSMUSG00000032743.15, intron 5 of 14) protein_coding-intron (ENSMUSG00000032743.15, intron 18 of 27) 146883 ENSMUSG00000032743.15 ENSMUSG00000032743 ENSMUST00000155059 D430042O09Rik protein_coding Interval_171978 chr9 123133637 123133854 + 0 NA intron (ENSMUSG00000025785.5, intron 4 of 4) protein_coding-intron (ENSMUSG00000025785.5, intron 7 of 7) -4721 ENSMUSG00000111490.1 ENSMUSG00000111490 ENSMUST00000216113 Gm47159 TEC Interval_134495 chr6 29132116 29132470 + 0 NA promoter-TSS (ENSMUSG00000029701.15) protein_coding-promoter-TSS (ENSMUSG00000029701.15) 18386 ENSMUSG00000095596.1 ENSMUSG00000095596 ENSMUST00000178237 Gm24303 miRNA Interval_89737 chr2 25126309 25127797 + 0 NA intron (ENSMUSG00000118563.1, intron 2 of 13) lincRNA-intron (ENSMUSG00000087028.7, intron 2 of 2) 10772 ENSMUSG00000118563.1 ENSMUSG00000118563 ENSMUST00000238850 AL732309.1 unitary_pseudogene Interval_174652 chrX 162345107 162345612 + 0 NA Intergenic Intergenic -6237 ENSMUSG00000082625.1 ENSMUSG00000082625 ENSMUST00000119454 Gm15204 processed_pseudogene Interval_108598 chr3 129454487 129455027 + 0 NA Intergenic Intergenic -7215 ENSMUSG00000106258.1 ENSMUSG00000106258 ENSMUST00000198361 Rpl7a-ps7 processed_pseudogene Interval_106407 chr3 95972979 95973327 + 0 NA Intergenic Intergenic -8765 ENSMUSG00000106640.1 ENSMUSG00000106640 ENSMUST00000197308 Gm20940 processed_pseudogene Interval_58480 chr15 34993449 34994021 + 0 NA intron (ENSMUSG00000022329.15, intron 8 of 10) protein_coding-intron (ENSMUSG00000022329.15, intron 8 of 10) -33498 ENSMUSG00000022329.15 ENSMUSG00000022329 ENSMUST00000138841 Stk3 protein_coding Interval_111614 chr4 24576573 24577735 + 0 NA intron (ENSMUSG00000045751.16, intron 14 of 16) protein_coding-intron (ENSMUSG00000045751.16, intron 13 of 22) 80703 ENSMUSG00000045751.16 ENSMUSG00000045751 ENSMUST00000123984 Mms22l protein_coding Interval_163987 chr9 30435969 30436522 + 0 NA intron (ENSMUSG00000031993.7, intron 4 of 9) protein_coding-intron (ENSMUSG00000031993.7, intron 5 of 10) 7000 ENSMUSG00000031993.7 ENSMUSG00000031993 ENSMUST00000216545 Snx19 protein_coding Interval_56793 chr14 122125108 122125421 + 0 NA intron (ENSMUSG00000025544.13, intron 2 of 12) protein_coding-intron (ENSMUSG00000025544.13, intron 2 of 16) 3711 ENSMUSG00000090674.1 ENSMUSG00000090674 ENSMUST00000166043 Gm17082 processed_pseudogene Interval_29474 chr11 84224516 84224840 + 0 NA intron (ENSMUSG00000020532.18, intron 6 of 8) protein_coding-intron (ENSMUSG00000020532.18, intron 5 of 53) 35085 ENSMUSG00000103122.1 ENSMUSG00000103122 ENSMUST00000194891 Gm37391 TEC Interval_171881 chr9 121989299 121990457 + 0 NA intron (ENSMUSG00000066235.7, intron 1 of 1) protein_coding-intron (ENSMUSG00000066235.7, intron 1 of 1) 6135 ENSMUSG00000066235.7 ENSMUSG00000066235 ENSMUST00000215008 Pomgnt2 protein_coding Interval_80432 chr18 42156348 42156676 + 0 NA TTS (ENSMUSG00000057719.11) protein_coding-TTS (ENSMUSG00000057719.11) 13479 ENSMUSG00000057719.11 ENSMUSG00000057719 ENSMUST00000236947 Sh3rf2 protein_coding Interval_144159 chr7 19715002 19716264 + 0 NA promoter-TSS (ENSMUSG00000002984.17) protein_coding-promoter-TSS (ENSMUSG00000002984.17) 617 ENSMUSG00000092381.1 ENSMUSG00000092381 ENSMUST00000172483 Gm20512 antisense Interval_134925 chr6 33713925 33714462 + 0 NA intron (ENSMUSG00000029763.17, intron 1 of 4) protein_coding-intron (ENSMUSG00000029763.17, intron 10 of 17) -22039 ENSMUSG00000107103.1 ENSMUSG00000107103 ENSMUST00000202529 Gm43164 TEC Interval_8485 chr1 139984246 139985070 + 0 NA intron (ENSMUSG00000085867.1, intron 2 of 5) unprocessed_pseudogene-intron (ENSMUSG00000085867.1, intron 2 of 5) 9547 ENSMUSG00000085867.1 ENSMUSG00000085867 ENSMUST00000126680 Gm5834 unprocessed_pseudogene Interval_14941 chr10 41299547 41300895 + 0 NA intron (ENSMUSG00000038417.4, intron 1 of 22) protein_coding-intron (ENSMUSG00000038417.4, intron 1 of 22) 3039 ENSMUSG00000038417.4 ENSMUSG00000038417 ENSMUST00000043814 Fig4 protein_coding Interval_4793 chr1 78731086 78731297 + 0 NA Intergenic Intergenic 40928 ENSMUSG00000032883.15 ENSMUSG00000032883 ENSMUST00000148608 Acsl3 protein_coding Interval_139215 chr6 97247063 97247599 + 0 NA exon (ENSMUSG00000044086.8, exon 2 of 3) protein_coding-exon (ENSMUSG00000044086.8, exon 2 of 3) 5428 ENSMUSG00000044086.8 ENSMUSG00000044086 ENSMUST00000095655 Lmod3 protein_coding Interval_46139 chr13 61969211 61969417 + 0 NA Intergenic Intergenic -37354 ENSMUSG00000113014.1 ENSMUSG00000113014 ENSMUST00000221926 Selenok-ps8 processed_pseudogene Interval_152716 chr7 136792157 136792387 + 0 NA Intergenic Intergenic -18637 ENSMUSG00000110126.1 ENSMUSG00000110126 ENSMUST00000211473 Gm9347 processed_pseudogene Interval_114724 chr4 84413966 84414176 + 0 NA intron (ENSMUSG00000028487.18, intron 2 of 2) protein_coding-intron (ENSMUSG00000028487.18, intron 5 of 7) 15053 ENSMUSG00000083743.1 ENSMUSG00000083743 ENSMUST00000119071 Gm12421 processed_pseudogene Interval_88461 chr2 5315945 5316322 + 0 NA intron (ENSMUSG00000039145.16, intron 6 of 10) protein_coding-intron (ENSMUSG00000039145.16, intron 6 of 10) 32483 ENSMUSG00000080820.1 ENSMUSG00000080820 ENSMUST00000117204 Gm13197 processed_pseudogene Interval_21429 chr10 128555941 128557927 + 0 NA TTS (ENSMUSG00000025364.13) protein_coding-TTS (ENSMUSG00000025364.13) 2385 ENSMUSG00000105001.1 ENSMUSG00000105001 ENSMUST00000197964 Gm47275 miRNA Interval_91390 chr2 38492326 38492527 + 0 NA Intergenic Intergenic 2322 ENSMUSG00000084124.1 ENSMUSG00000084124 ENSMUST00000120026 Gm13588 processed_pseudogene Interval_131209 chr5 135830430 135830918 + 0 NA intron (ENSMUSG00000039860.19, intron 1 of 14) protein_coding-intron (ENSMUSG00000039860.19, intron 1 of 15) 6698 ENSMUSG00000094486.1 ENSMUSG00000094486 ENSMUST00000175494 Gm23268 miRNA Interval_11793 chr1 185469202 185469844 + 0 NA TTS (ENSMUSG00000026614.7) protein_coding-TTS (ENSMUSG00000026614.7) -13955 ENSMUSG00000097615.1 ENSMUSG00000097615 ENSMUST00000180623 Gm2061 antisense Interval_5649 chr1 90543246 90544997 + 0 NA Intergenic Intergenic 23625 ENSMUSG00000103292.1 ENSMUSG00000103292 ENSMUST00000192105 Gm35048 TEC Interval_119885 chr4 140684199 140685317 + 0 NA TTS (ENSMUSG00000086159.1) lincRNA-TTS (ENSMUSG00000086159.1) 5005 ENSMUSG00000086159.1 ENSMUSG00000086159 ENSMUST00000141469 Gm13025 lincRNA Interval_146035 chr7 43345820 43346883 + 0 NA Intergenic Intergenic 1801 ENSMUSG00000108300.1 ENSMUSG00000108300 ENSMUST00000206010 Gm44539 processed_pseudogene Interval_11544 chr1 182584850 182585694 + 0 NA intron (ENSMUSG00000038599.14, intron 2 of 9) protein_coding-intron (ENSMUSG00000038599.14, intron 2 of 20) 20265 ENSMUSG00000038599.14 ENSMUSG00000038599 ENSMUST00000192671 Capn8 protein_coding Interval_2235 chr1 37258198 37258618 + 0 NA intron (ENSMUSG00000026114.14, intron 6 of 6) protein_coding-intron (ENSMUSG00000026114.14, intron 5 of 5) 40029 ENSMUSG00000026114.14 ENSMUSG00000026114 ENSMUST00000027288 Cnga3 protein_coding Interval_120233 chr4 144600352 144601853 + 0 NA Intergenic Intergenic -12605 ENSMUSG00000070609.3 ENSMUSG00000070609 ENSMUST00000094510 Aadacl4 protein_coding Interval_34547 chr12 5013189 5013483 + 0 NA intron (ENSMUSG00000052812.5, intron 7 of 7) protein_coding-intron (ENSMUSG00000052812.5, intron 23 of 30) -13968 ENSMUSG00000087780.1 ENSMUSG00000087780 ENSMUST00000157155 Gm23167 snRNA Interval_99415 chr2 160780710 160781227 + 0 NA TTS (ENSMUSG00000035877.17) protein_coding-TTS (ENSMUSG00000035877.17) -29059 ENSMUSG00000098889.1 ENSMUSG00000098889 ENSMUST00000154038 Gm27206 antisense Interval_253 KZ289068.1 328336 328751 + 0 NA NA NA NA NA Interval_101116 chr2 178081636 178082734 + 0 NA Intergenic Intergenic -3760 ENSMUSG00000078861.8 ENSMUSG00000078861 ENSMUST00000108923 Zfp931 protein_coding Interval_104429 chr3 65565851 65566701 + 0 NA Intergenic Intergenic 20236 ENSMUSG00000034640.9 ENSMUSG00000034640 ENSMUST00000154094 Tiparp protein_coding Interval_107485 chr3 108036057 108036337 + 0 NA Intergenic Intergenic 2171 ENSMUSG00000064569.1 ENSMUSG00000064569 ENSMUST00000082635 Gm25592 snoRNA Interval_141498 chr6 128648824 128649243 + 0 NA promoter-TSS (ENSMUSG00000107831.1) processed_pseudogene-promoter-TSS (ENSMUSG00000107831.1) 32 ENSMUSG00000107831.1 ENSMUSG00000107831 ENSMUST00000203669 Gm44420 processed_pseudogene Interval_51017 chr14 21618666 21619143 + 0 NA exon (ENSMUSG00000021767.19, exon 4 of 17) protein_coding-exon (ENSMUSG00000021767.19, exon 4 of 17) 84198 ENSMUSG00000063821.6 ENSMUSG00000063821 ENSMUST00000224735 Dupd1 protein_coding Interval_97065 chr2 130919041 130919587 + 0 NA intron (ENSMUSG00000027312.14, intron 1 of 2) protein_coding-intron (ENSMUSG00000027312.14, intron 1 of 28) 12383 ENSMUSG00000027312.14 ENSMUSG00000027312 ENSMUST00000151364 Atrn protein_coding Interval_105979 chr3 90422006 90422282 + 0 NA intron (ENSMUSG00000027933.11, intron 2 of 8) protein_coding-intron (ENSMUSG00000027933.11, intron 2 of 29) -18930 ENSMUSG00000027933.11 ENSMUSG00000027933 ENSMUST00000198562 Ints3 protein_coding Interval_169530 chr9 98924366 98924833 + 0 NA TTS (ENSMUSG00000101240.1) processed_pseudogene-TTS (ENSMUSG00000101240.1) 1013 ENSMUSG00000101240.1 ENSMUSG00000101240 ENSMUST00000191410 Gm28266 processed_pseudogene Interval_141919 chr6 135368517 135368879 + 0 NA intron (ENSMUSG00000030208.15, intron 1 of 4) protein_coding-intron (ENSMUSG00000030208.15, intron 1 of 4) 6153 ENSMUSG00000030208.15 ENSMUSG00000030208 ENSMUST00000111907 Emp1 protein_coding Interval_66236 chr16 32487276 32488320 + 0 NA promoter-TSS (ENSMUSG00000035699.8) protein_coding-promoter-TSS (ENSMUSG00000035699.8) -95 ENSMUSG00000035699.8 ENSMUSG00000035699 ENSMUST00000232418 Slc51a protein_coding Interval_60224 chr15 68393704 68395246 + 0 NA Intergenic Intergenic -31299 ENSMUSG00000093387.1 ENSMUSG00000093387 ENSMUST00000175699 Gm20732 lincRNA Interval_145284 chr7 31135557 31135800 + 0 NA exon (ENSMUSG00000001248.15, exon 13 of 19) protein_coding-exon (ENSMUSG00000001248.15, exon 13 of 19) -1410 ENSMUSG00000001248.15 ENSMUSG00000001248 ENSMUST00000186723 Gramd1a protein_coding Interval_106456 chr3 96465904 96466339 + 0 NA exon (ENSMUSG00000106641.1, exon 1 of 1) TEC-exon (ENSMUSG00000106641.1, exon 1 of 1) 803 ENSMUSG00000106641.1 ENSMUSG00000106641 ENSMUST00000197685 Gm43534 TEC Interval_168224 chr9 78035321 78035730 + 0 NA Intergenic Intergenic 7580 ENSMUSG00000111850.1 ENSMUSG00000111850 ENSMUST00000216404 Gm47829 processed_pseudogene Interval_161244 chr8 119163991 119164317 + 0 NA intron (ENSMUSG00000031841.19, intron 1 of 3) protein_coding-intron (ENSMUSG00000031841.19, intron 7 of 13) 12689 ENSMUSG00000031841.19 ENSMUSG00000031841 ENSMUST00000151842 Cdh13 protein_coding Interval_114720 chr4 84298282 84298601 + 0 NA intron (ENSMUSG00000028487.18, intron 5 of 5) protein_coding-intron (ENSMUSG00000028487.18, intron 6 of 7) -6511 ENSMUSG00000028487.18 ENSMUSG00000028487 ENSMUST00000176370 Bnc2 protein_coding Interval_4975 chr1 83135973 83136227 + 0 NA Intergenic Intergenic 19307 ENSMUSG00000026166.14 ENSMUSG00000026166 ENSMUST00000186832 Ccl20 protein_coding Interval_9954 chr1 164353426 164353630 + 0 NA intron (ENSMUSG00000026575.15, intron 2 of 3) protein_coding-intron (ENSMUSG00000026575.15, intron 8 of 12) 45801 ENSMUSG00000026575.15 ENSMUSG00000026575 ENSMUST00000192710 Nme7 protein_coding Interval_39056 chr12 84733124 84733418 + 0 NA Intergenic Intergenic 29269 ENSMUSG00000021242.9 ENSMUSG00000021242 ENSMUST00000221056 Npc2 protein_coding Interval_82115 chr18 67812649 67813247 + 0 NA intron (ENSMUSG00000024542.9, intron 7 of 15) protein_coding-intron (ENSMUSG00000024542.9, intron 7 of 45) -13005 ENSMUSG00000118134.1 ENSMUSG00000118134 ENSMUST00000237968 4930549G23Rik antisense Interval_25015 chr11 43124194 43124454 + 0 NA Intergenic Intergenic -8030 ENSMUSG00000085951.1 ENSMUSG00000085951 ENSMUST00000142108 Gm12145 lincRNA Interval_155392 chr8 33184400 33185259 + 0 NA Intergenic Intergenic 7467 ENSMUSG00000083557.1 ENSMUSG00000083557 ENSMUST00000119347 Gm6877 processed_pseudogene Interval_162525 chr9 3870148 3872701 + 0 NA intron (ENSMUSG00000041624.10, intron 7 of 7) protein_coding-intron (ENSMUSG00000041624.10, intron 7 of 7) 338536 ENSMUSG00000041624.10 ENSMUSG00000041624 ENSMUST00000212705 Gucy1a2 protein_coding Interval_82825 chr18 77234850 77235072 + 0 NA intron (ENSMUSG00000025425.18, intron 2 of 6) protein_coding-intron (ENSMUSG00000025425.18, intron 3 of 7) -15634 ENSMUSG00000082784.1 ENSMUSG00000082784 ENSMUST00000118893 Gm15957 processed_pseudogene Interval_99084 chr2 157072544 157072770 + 0 NA intron (ENSMUSG00000055485.6, intron 1 of 14) protein_coding-intron (ENSMUSG00000055485.6, intron 1 of 14) -14398 ENSMUSG00000074628.9 ENSMUSG00000074628 ENSMUST00000099140 Tldc2 protein_coding Interval_68415 chr16 76292104 76293189 + 0 NA exon (ENSMUSG00000048490.14, exon 4 of 4) protein_coding-exon (ENSMUSG00000048490.14, exon 4 of 4) 81180 ENSMUSG00000048490.14 ENSMUSG00000048490 ENSMUST00000145649 Nrip1 protein_coding Interval_125356 chr5 66393009 66393476 + 0 NA intron (ENSMUSG00000029207.16, intron 6 of 17) protein_coding-intron (ENSMUSG00000029207.16, intron 6 of 17) 36324 ENSMUSG00000106910.1 ENSMUSG00000106910 ENSMUST00000202238 Gm16273 processed_pseudogene Interval_121741 chr5 6298580 6299129 + 0 NA Intergenic Intergenic 15137 ENSMUSG00000105370.1 ENSMUSG00000105370 ENSMUST00000197319 Gm42718 processed_pseudogene Interval_51151 chr14 24190757 24191549 + 0 NA exon (ENSMUSG00000021782.14, exon 3 of 31) protein_coding-exon (ENSMUSG00000021782.14, exon 3 of 31) -20167 ENSMUSG00000114880.1 ENSMUSG00000114880 ENSMUST00000224920 Gm49098 TEC Interval_124641 chr5 52741284 52742446 + 0 NA exon (ENSMUSG00000029186.12, exon 1 of 10) protein_coding-exon (ENSMUSG00000029186.12, exon 1 of 10) -12737 ENSMUSG00000029186.12 ENSMUSG00000029186 ENSMUST00000145825 Pi4k2b protein_coding Interval_47910 chr13 94319574 94319859 + 0 NA Intergenic Intergenic -19857 ENSMUSG00000114056.1 ENSMUSG00000114056 ENSMUST00000220897 Gm5668 processed_pseudogene Interval_128984 chr5 116445947 116447146 + 0 NA exon (ENSMUSG00000063919.11, exon 12 of 13) protein_coding-exon (ENSMUSG00000063919.11, exon 12 of 13) 7826 ENSMUSG00000086219.7 ENSMUSG00000086219 ENSMUST00000126959 Srrm4os antisense Interval_119510 chr4 138017291 138017571 + 0 NA intron (ENSMUSG00000028760.16, intron 2 of 8) protein_coding-intron (ENSMUSG00000028760.16, intron 2 of 9) 23918 ENSMUSG00000028760.16 ENSMUSG00000028760 ENSMUST00000148074 Eif4g3 protein_coding Interval_95722 chr2 114954806 114955463 + 0 NA intron (ENSMUSG00000085222.1, intron 5 of 8) lincRNA-intron (ENSMUSG00000085222.1, intron 5 of 8) 16564 ENSMUSG00000099361.1 ENSMUSG00000099361 ENSMUST00000190899 Gm28492 sense_intronic Interval_47142 chr13 76256660 76256918 + 0 NA intron (ENSMUSG00000114242.1, intron 1 of 2) protein_coding-intron (ENSMUSG00000109228.2, intron 4 of 10) 823 ENSMUSG00000114242.1 ENSMUSG00000114242 ENSMUST00000225095 Gm31219 antisense Interval_170328 chr9 107146244 107146473 + 0 NA intron (ENSMUSG00000039716.12, intron 2 of 4) protein_coding-intron (ENSMUSG00000039716.12, intron 3 of 52) -18619 ENSMUSG00000077494.1 ENSMUSG00000077494 ENSMUST00000104306 Gm23595 snoRNA Interval_44820 chr13 48909092 48909457 + 0 NA intron (ENSMUSG00000038014.7, intron 10 of 17) protein_coding-intron (ENSMUSG00000038014.7, intron 10 of 17) -38155 ENSMUSG00000038025.8 ENSMUSG00000038025 ENSMUST00000035540 Phf2 protein_coding Interval_4146 chr1 70698045 70698325 + 0 NA intron (ENSMUSG00000053153.14, intron 7 of 7) protein_coding-intron (ENSMUSG00000053153.14, intron 16 of 16) -27738 ENSMUSG00000045648.15 ENSMUSG00000045648 ENSMUST00000162182 Vwc2l protein_coding Interval_100152 chr2 167363401 167364045 + 0 NA Intergenic Intergenic -49868 ENSMUSG00000017929.13 ENSMUSG00000017929 ENSMUST00000133557 B4galt5 protein_coding Interval_82564 chr18 75185257 75185673 + 0 NA intron (ENSMUSG00000035765.10, intron 13 of 16) protein_coding-intron (ENSMUSG00000035765.10, intron 13 of 16) -2651 ENSMUSG00000094153.2 ENSMUSG00000094153 ENSMUST00000179328 Gm8807 processed_pseudogene Interval_111903 chr4 32386718 32389177 + 0 NA intron (ENSMUSG00000040270.16, intron 2 of 3) protein_coding-intron (ENSMUSG00000040270.16, intron 2 of 7) -29488 ENSMUSG00000040270.16 ENSMUSG00000040270 ENSMUST00000125263 Bach2 protein_coding Interval_120088 chr4 141746821 141747319 + 0 NA exon (ENSMUSG00000040706.4, exon 1 of 7) protein_coding-exon (ENSMUSG00000040706.4, exon 1 of 7) 398 ENSMUSG00000040706.4 ENSMUSG00000040706 ENSMUST00000038161 Agmat protein_coding Interval_94587 chr2 92452162 92452361 + 0 NA TTS (ENSMUSG00000049922.8) protein_coding-TTS (ENSMUSG00000049922.8) 7448 ENSMUSG00000049922.8 ENSMUSG00000049922 ENSMUST00000136718 Slc35c1 protein_coding Interval_165980 chr9 55160599 55160945 + 0 NA intron (ENSMUSG00000032307.16, intron 1 of 12) protein_coding-intron (ENSMUSG00000032307.16, intron 1 of 12) -34073 ENSMUSG00000032307.16 ENSMUSG00000032307 ENSMUST00000148468 Ube2q2 protein_coding Interval_160836 chr8 113514399 113516011 + 0 NA Intergenic Intergenic 4401 ENSMUSG00000077289.1 ENSMUSG00000077289 ENSMUST00000104101 Gm25766 snoRNA Interval_43981 chr13 38668130 38668899 + 0 NA Intergenic Intergenic 6052 ENSMUSG00000114651.1 ENSMUSG00000114651 ENSMUST00000224206 Gm6200 processed_pseudogene Interval_142743 chr6 145291414 145291677 + 0 NA Intergenic Intergenic -3288 ENSMUSG00000087852.1 ENSMUSG00000087852 ENSMUST00000157227 Gm22793 misc_RNA Interval_49608 chr13 113507544 113508610 + 0 NA Intergenic Intergenic -5233 ENSMUSG00000114790.1 ENSMUSG00000114790 ENSMUST00000223835 4921509O07Rik lincRNA Interval_111926 chr4 32614892 32615940 + 0 NA promoter-TSS (ENSMUSG00000028282.12) protein_coding-promoter-TSS (ENSMUSG00000028282.12) -57 ENSMUSG00000028282.12 ENSMUSG00000028282 ENSMUST00000108178 Casp8ap2 protein_coding Interval_32927 chr11 113175425 113176360 + 0 NA intron (ENSMUSG00000087259.7, intron 1 of 2) lincRNA-intron (ENSMUSG00000087259.7, intron 1 of 2) -2815 ENSMUSG00000087259.7 ENSMUSG00000087259 ENSMUST00000150712 2610035D17Rik lincRNA Interval_101257 chr2 179903299 179904069 + 0 NA Intergenic Intergenic -72309 ENSMUSG00000085704.1 ENSMUSG00000085704 ENSMUST00000150145 4921531C22Rik processed_transcript Interval_88830 chr2 11501036 11503672 + 0 NA promoter-TSS (ENSMUSG00000026773.19) protein_coding-promoter-TSS (ENSMUSG00000026773.19) -19352 ENSMUSG00000102329.1 ENSMUSG00000102329 ENSMUST00000192087 Gm10851 antisense Interval_78932 chr18 22020121 22020668 + 0 NA intron (ENSMUSG00000024306.13, intron 19 of 23) protein_coding-intron (ENSMUSG00000024306.13, intron 18 of 22) 151048 ENSMUSG00000024306.13 ENSMUSG00000024306 ENSMUST00000234661 Ccdc178 protein_coding Interval_61666 chr15 83278667 83279853 + 0 NA Intergenic Intergenic -21163 ENSMUSG00000116416.1 ENSMUSG00000116416 ENSMUST00000230161 Gm32886 processed_pseudogene Interval_110975 chr4 10983544 10986035 + 0 NA Intergenic Intergenic 23138 ENSMUSG00000049969.3 ENSMUSG00000049969 ENSMUST00000137891 Plekhf2 protein_coding Interval_138439 chr6 88209660 88210661 + 0 NA Intergenic Intergenic 6342 ENSMUSG00000107776.1 ENSMUSG00000107776 ENSMUST00000204350 Gm44388 TEC Interval_70222 chr17 6794811 6795027 + 0 NA Intergenic Intergenic 4126 ENSMUSG00000116893.1 ENSMUSG00000116893 ENSMUST00000231691 Gm49717 processed_pseudogene Interval_143223 chr7 4608563 4608798 + 0 NA Intergenic Intergenic -2955 ENSMUSG00000108392.1 ENSMUSG00000108392 ENSMUST00000206707 Gm9463 processed_pseudogene Interval_34774 chr12 10904221 10904427 + 0 NA Intergenic Intergenic -4084 ENSMUSG00000066632.3 ENSMUSG00000066632 ENSMUST00000085735 Pgk1-rs7 processed_pseudogene Interval_56751 chr14 121851169 121851762 + 0 NA Intergenic Intergenic 20451 ENSMUSG00000115443.1 ENSMUSG00000115443 ENSMUST00000228932 Gm9395 processed_pseudogene Interval_121186 chr4 153883589 153884496 + 0 NA Intergenic Intergenic 7658 ENSMUSG00000077519.1 ENSMUSG00000077519 ENSMUST00000104331 Gm25880 snoRNA Interval_12599 chr10 3812619 3812903 + 0 NA intron (ENSMUSG00000040624.18, intron 2 of 7) protein_coding-intron (ENSMUSG00000040624.18, intron 2 of 16) -22118 ENSMUSG00000040624.18 ENSMUSG00000040624 ENSMUST00000141367 Plekhg1 protein_coding Interval_157226 chr8 68220631 68221510 + 0 NA Intergenic Intergenic -9043 ENSMUSG00000030465.19 ENSMUSG00000030465 ENSMUST00000178529 Psd3 protein_coding Interval_148269 chr7 80197870 80200725 + 0 NA intron (ENSMUSG00000030539.13, intron 1 of 13) protein_coding-intron (ENSMUSG00000030539.13, intron 2 of 14) 856 ENSMUSG00000030539.13 ENSMUSG00000030539 ENSMUST00000123023 Sema4b protein_coding Interval_154792 chr8 23404114 23404841 + 0 NA Intergenic Intergenic -7025 ENSMUSG00000031548.7 ENSMUSG00000031548 ENSMUST00000033952 Sfrp1 protein_coding Interval_6379 chr1 106566454 106566759 + 0 NA intron (ENSMUSG00000057329.7, intron 1 of 1) protein_coding-intron (ENSMUSG00000057329.7, intron 1 of 1) -19975 ENSMUSG00000098344.1 ENSMUSG00000098344 ENSMUST00000183743 Mir3473f miRNA Interval_11767 chr1 185292205 185292837 + 0 NA intron (ENSMUSG00000026618.11, intron 18 of 22) protein_coding-intron (ENSMUSG00000026618.11, intron 18 of 22) 14723 ENSMUSG00000039318.12 ENSMUSG00000039318 ENSMUST00000195534 Rab3gap2 protein_coding Interval_170693 chr9 110131101 110132682 + 0 NA promoter-TSS (ENSMUSG00000032481.17) protein_coding-promoter-TSS (ENSMUSG00000032481.17) -10075 ENSMUSG00000105187.1 ENSMUSG00000105187 ENSMUST00000196828 Gm23377 snoRNA Interval_39115 chr12 85176890 85177716 + 0 NA promoter-TSS (ENSMUSG00000004791.7) protein_coding-promoter-TSS (ENSMUSG00000004791.7) 487 ENSMUSG00000004791.7 ENSMUSG00000004791 ENSMUST00000222850 Pgf protein_coding Interval_76356 chr17 79410537 79411894 + 0 NA Intergenic Intergenic 56516 ENSMUSG00000118651.1 ENSMUSG00000118651 ENSMUST00000239444 CT030740.1 antisense Interval_86574 chr19 41801585 41802432 + 0 NA promoter-TSS (ENSMUSG00000025154.15) protein_coding-promoter-TSS (ENSMUSG00000025154.15) 39 ENSMUSG00000025154.15 ENSMUSG00000025154 ENSMUST00000177495 Arhgap19 protein_coding Interval_86615 chr19 42068401 42069348 + 0 NA intron (ENSMUSG00000025176.14, intron 2 of 2) protein_coding-intron (ENSMUSG00000025176.14, intron 6 of 6) 10259 ENSMUSG00000049670.9 ENSMUSG00000049670 ENSMUST00000051772 Morn4 protein_coding Interval_29730 chr11 86443521 86444740 + 0 NA Intergenic Intergenic -6715 ENSMUSG00000064526.1 ENSMUSG00000064526 ENSMUST00000082592 Gm26439 snRNA Interval_104569 chr3 68336102 68336901 + 0 NA intron (ENSMUSG00000027777.15, intron 1 of 6) protein_coding-intron (ENSMUSG00000027777.15, intron 1 of 7) 3305 ENSMUSG00000102846.1 ENSMUSG00000102846 ENSMUST00000193165 Gm10292 processed_pseudogene Interval_81191 chr18 56216071 56216458 + 0 NA Intergenic Intergenic -5570 ENSMUSG00000092866.1 ENSMUSG00000092866 ENSMUST00000175125 Gm25476 miRNA Interval_142221 chr6 139176503 139176705 + 0 NA Intergenic Intergenic 19627 ENSMUSG00000088903.1 ENSMUSG00000088903 ENSMUST00000158278 Gm25434 scaRNA Interval_138980 chr6 93984638 93985518 + 0 NA intron (ENSMUSG00000045095.16, intron 1 of 24) protein_coding-intron (ENSMUSG00000045095.16, intron 1 of 21) -72574 ENSMUSG00000045095.16 ENSMUSG00000045095 ENSMUST00000203034 Magi1 protein_coding Interval_17580 chr10 77916450 77917346 + 0 NA TTS (ENSMUSG00000009292.18) protein_coding-TTS (ENSMUSG00000009292.18) -3047 ENSMUSG00000093443.1 ENSMUSG00000093443 ENSMUST00000177097 Gm22871 snoRNA Interval_92493 chr2 60098493 60098784 + 0 NA promoter-TSS (ENSMUSG00000087181.3) processed_pseudogene-promoter-TSS (ENSMUSG00000087181.3) 76 ENSMUSG00000087181.3 ENSMUSG00000087181 ENSMUST00000140763 Gm13570 processed_pseudogene Interval_114839 chr4 86092123 86092332 + 0 NA intron (ENSMUSG00000066113.16, intron 3 of 3) protein_coding-intron (ENSMUSG00000066113.16, intron 2 of 12) -48733 ENSMUSG00000064687.1 ENSMUSG00000064687 ENSMUST00000082753 Gm25811 snRNA Interval_172656 chrX 41180228 41181217 + 0 NA Intergenic Intergenic -67853 ENSMUSG00000081880.1 ENSMUSG00000081880 ENSMUST00000118988 Gm5385 processed_pseudogene Interval_124317 chr5 43879917 43881655 + 0 NA intron (ENSMUSG00000029084.5, intron 1 of 7) protein_coding-intron (ENSMUSG00000029084.5, intron 1 of 7) 4756 ENSMUSG00000086479.2 ENSMUSG00000086479 ENSMUST00000123363 Gm16014 sense_intronic Interval_27539 chr11 68544638 68544999 + 0 NA TTS (ENSMUSG00000046207.14) protein_coding-TTS (ENSMUSG00000046207.14) -11368 ENSMUSG00000048329.7 ENSMUSG00000048329 ENSMUST00000053211 Mfsd6l protein_coding Interval_26008 chr11 53447293 53447939 + 0 NA Intergenic Intergenic 9494 ENSMUSG00000072963.2 ENSMUSG00000072963 ENSMUST00000084653 Gm10447 bidirectional_promoter_lncRNA Interval_108419 chr3 126943872 126944416 + 0 NA exon (ENSMUSG00000032826.19, exon 38 of 46) protein_coding-exon (ENSMUSG00000032826.19, exon 38 of 46) 23375 ENSMUSG00000105469.1 ENSMUSG00000105469 ENSMUST00000196018 A930036I15Rik TEC Interval_6983 chr1 121539820 121540114 + 0 NA Intergenic Intergenic -11502 ENSMUSG00000050534.8 ENSMUSG00000050534 ENSMUST00000055884 Htr5b protein_coding Interval_103433 chr3 41535077 41536594 + 0 NA Intergenic Intergenic -7361 ENSMUSG00000106223.1 ENSMUSG00000106223 ENSMUST00000197509 2400006E01Rik lincRNA Interval_44106 chr13 40915200 40918180 + 0 NA promoter-TSS (ENSMUSG00000021360.16) protein_coding-promoter-TSS (ENSMUSG00000021360.16) 1205 ENSMUSG00000114662.1 ENSMUSG00000114662 ENSMUST00000224935 Gm31683 antisense Interval_65621 chr16 24300021 24300514 + 0 NA intron (ENSMUSG00000115852.2, intron 3 of 4) transcribed_processed_pseudogene-intron (ENSMUSG00000115852.2, intron 3 of 4) 69965 ENSMUSG00000116785.1 ENSMUSG00000116785 ENSMUST00000231939 Gm41434 processed_pseudogene Interval_172519 chrX 23692384 23693871 + 0 NA promoter-TSS (ENSMUSG00000036769.14) protein_coding-promoter-TSS (ENSMUSG00000036769.14) -32 ENSMUSG00000036769.14 ENSMUSG00000036769 ENSMUST00000135445 Wdr44 protein_coding Interval_12742 chr10 4626579 4627730 + 0 NA intron (ENSMUSG00000019768.16, intron 1 of 8) protein_coding-intron (ENSMUSG00000019768.16, intron 1 of 8) 15561 ENSMUSG00000019768.16 ENSMUSG00000019768 ENSMUST00000137012 Esr1 protein_coding Interval_18438 chr10 85948571 85949918 + 0 NA exon (ENSMUSG00000001783.3, exon 4 of 4) protein_coding-exon (ENSMUSG00000001783.3, exon 4 of 4) -5716 ENSMUSG00000112613.1 ENSMUSG00000112613 ENSMUST00000218274 Gm48175 processed_pseudogene Interval_73277 chr17 35937356 35938165 + 0 NA Intergenic Intergenic -1810 ENSMUSG00000049832.6 ENSMUSG00000049832 ENSMUST00000173786 Rbx1-ps processed_pseudogene Interval_94380 chr2 90631517 90632790 + 0 NA Intergenic Intergenic -51506 ENSMUSG00000025314.16 ENSMUSG00000025314 ENSMUST00000168621 Ptprj protein_coding Interval_115233 chr4 94673521 94675734 + 0 NA intron (ENSMUSG00000028576.12, intron 13 of 19) protein_coding-intron (ENSMUSG00000028576.12, intron 13 of 19) -4553 ENSMUSG00000028576.12 ENSMUSG00000028576 ENSMUST00000152289 Ift74 protein_coding Interval_131883 chr5 140581416 140581925 + 0 NA Intergenic Intergenic -16599 ENSMUSG00000036586.6 ENSMUSG00000036586 ENSMUST00000042993 Grifin protein_coding Interval_120432 chr4 148589673 148589872 + 0 NA Intergenic Intergenic -2146 ENSMUSG00000006442.10 ENSMUSG00000006442 ENSMUST00000140129 Srm protein_coding Interval_39649 chr12 91772866 91773094 + 0 NA intron (ENSMUSG00000020961.15, intron 1 of 6) protein_coding-intron (ENSMUSG00000020961.15, intron 1 of 6) -1810 ENSMUSG00000020961.15 ENSMUSG00000020961 ENSMUST00000166008 Ston2 protein_coding Interval_132516 chr5 145666501 145666757 + 0 NA Intergenic Intergenic -32636 ENSMUSG00000106040.1 ENSMUSG00000106040 ENSMUST00000196626 Cyp3a63-ps unprocessed_pseudogene Interval_118779 chr4 133658799 133661340 + 0 NA TTS (ENSMUSG00000043257.15) protein_coding-TTS (ENSMUSG00000043257.15) 6067 ENSMUSG00000093031.2 ENSMUSG00000093031 ENSMUST00000175290 Gm22662 misc_RNA Interval_101123 chr2 178141386 178143021 + 0 NA exon (ENSMUSG00000027525.18, exon 1 of 13) protein_coding-exon (ENSMUSG00000027525.18, exon 1 of 13) -63778 ENSMUSG00000078861.8 ENSMUSG00000078861 ENSMUST00000108923 Zfp931 protein_coding Interval_136263 chr6 52380314 52380570 + 0 NA Intergenic Intergenic -22618 ENSMUSG00000084282.1 ENSMUSG00000084282 ENSMUST00000117393 Gm15054 processed_pseudogene Interval_103338 chr3 39568333 39569780 + 0 NA Intergenic Intergenic -67003 ENSMUSG00000106786.1 ENSMUSG00000106786 ENSMUST00000201317 Gm42781 TEC Interval_114283 chr4 70601461 70601774 + 0 NA Intergenic Intergenic -66689 ENSMUSG00000039270.9 ENSMUSG00000039270 ENSMUST00000037881 Megf9 protein_coding Interval_10172 chr1 166360070 166360609 + 0 NA Intergenic Intergenic -18985 ENSMUSG00000026563.13 ENSMUSG00000026563 ENSMUST00000132817 Tada1 protein_coding Interval_123856 chr5 35986548 35986753 + 0 NA promoter-TSS (ENSMUSG00000029094.12) protein_coding-promoter-TSS (ENSMUSG00000029094.12) 2462 ENSMUSG00000029094.12 ENSMUSG00000029094 ENSMUST00000201482 Afap1 protein_coding Interval_92521 chr2 60261057 60261638 + 0 NA intron (ENSMUSG00000060703.12, intron 2 of 5) protein_coding-intron (ENSMUSG00000060703.12, intron 2 of 4) 14227 ENSMUSG00000080198.2 ENSMUSG00000080198 ENSMUST00000116410 Rpl10a-ps4 processed_pseudogene Interval_61365 chr15 81104758 81105419 + 0 NA promoter-TSS (ENSMUSG00000042292.18) protein_coding-promoter-TSS (ENSMUSG00000042292.18) 10757 ENSMUSG00000116321.1 ENSMUSG00000116321 ENSMUST00000230595 Gm49522 TEC Interval_27860 chr11 70459151 70460399 + 0 NA promoter-TSS (ENSMUSG00000040829.14) protein_coding-promoter-TSS (ENSMUSG00000040829.14) 57 ENSMUSG00000018920.11 ENSMUSG00000018920 ENSMUST00000154475 Cxcl16 protein_coding Interval_25253 chr11 45900305 45900552 + 0 NA intron (ENSMUSG00000006169.20, intron 7 of 7) protein_coding-intron (ENSMUSG00000006169.20, intron 8 of 11) 18031 ENSMUSG00000006169.20 ENSMUSG00000006169 ENSMUST00000133715 Clint1 protein_coding Interval_115876 chr4 105459650 105461308 + 0 NA Intergenic Intergenic -50753 ENSMUSG00000083128.1 ENSMUSG00000083128 ENSMUST00000120700 Gm12723 processed_pseudogene Interval_38367 chr12 77855576 77856086 + 0 NA Intergenic Intergenic 36249 ENSMUSG00000112551.1 ENSMUSG00000112551 ENSMUST00000218309 Gm8219 processed_pseudogene Interval_125396 chr5 66665850 66666068 + 0 NA intron (ENSMUSG00000087601.3, intron 1 of 3) antisense-intron (ENSMUSG00000087601.3, intron 1 of 4) 10074 ENSMUSG00000087601.3 ENSMUSG00000087601 ENSMUST00000177319 Uchl1os antisense Interval_14337 chr10 31012929 31013212 + 0 NA intron (ENSMUSG00000111778.1, intron 3 of 4) lincRNA-intron (ENSMUSG00000111778.1, intron 4 of 4) 53172 ENSMUSG00000111778.1 ENSMUSG00000111778 ENSMUST00000217645 Gm30676 lincRNA Interval_152405 chr7 132808753 132809752 + 0 NA intron (ENSMUSG00000030956.15, intron 1 of 3) protein_coding-intron (ENSMUSG00000030956.15, intron 1 of 3) -6502 ENSMUSG00000030956.15 ENSMUSG00000030956 ENSMUST00000148303 Fam53b protein_coding Interval_21644 chr11 3408536 3409672 + 0 NA promoter-TSS (ENSMUSG00000020451.17) protein_coding-promoter-TSS (ENSMUSG00000020451.17) 43230 ENSMUSG00000020448.16 ENSMUSG00000020448 ENSMUST00000144055 Rnf185 protein_coding Interval_72424 chr17 29732801 29733886 + 0 NA Intergenic Intergenic 16271 ENSMUSG00000117434.1 ENSMUSG00000117434 ENSMUST00000234637 1810014P07Rik bidirectional_promoter_lncRNA Interval_168870 chr9 88255434 88256297 + 0 NA Intergenic Intergenic -4030 ENSMUSG00000100782.1 ENSMUSG00000100782 ENSMUST00000190118 Gm28231 lincRNA Interval_146661 chr7 49254412 49255452 + 0 NA intron (ENSMUSG00000052512.17, intron 1 of 10) protein_coding-intron (ENSMUSG00000052512.17, intron 1 of 37) 59391 ENSMUSG00000103834.1 ENSMUSG00000103834 ENSMUST00000195677 Gm37613 TEC Interval_135772 chr6 47201394 47203020 + 0 NA intron (ENSMUSG00000039419.17, intron 21 of 23) protein_coding-intron (ENSMUSG00000039419.17, intron 21 of 23) 157051 ENSMUSG00000107952.1 ENSMUSG00000107952 ENSMUST00000203583 Gm6352 processed_pseudogene Interval_138313 chr6 87123658 87124042 + 0 NA Intergenic Intergenic 17002 ENSMUSG00000108195.1 ENSMUSG00000108195 ENSMUST00000204151 Gm44415 TEC Interval_108475 chr3 127521017 127521313 + 0 NA Intergenic Intergenic 8265 ENSMUSG00000104957.1 ENSMUSG00000104957 ENSMUST00000196862 Gm43354 processed_pseudogene Interval_48376 chr13 98607634 98608371 + 0 NA TTS (ENSMUSG00000114521.1) processed_transcript-TTS (ENSMUSG00000114521.1) -5499 ENSMUSG00000114733.1 ENSMUSG00000114733 ENSMUST00000223936 Gm4815 processed_pseudogene Interval_117485 chr4 124075671 124076965 + 0 NA Intergenic Intergenic 150084 ENSMUSG00000082515.1 ENSMUSG00000082515 ENSMUST00000118389 Gm12902 processed_pseudogene Interval_7538 chr1 132095364 132096834 + 0 NA Intergenic Intergenic -4540 ENSMUSG00000088779.1 ENSMUSG00000088779 ENSMUST00000158154 Gm26034 snRNA Interval_128315 chr5 112493198 112493973 + 0 NA intron (ENSMUSG00000058153.15, intron 1 of 14) protein_coding-intron (ENSMUSG00000058153.15, intron 1 of 16) 44159 ENSMUSG00000072722.2 ENSMUSG00000072722 ENSMUST00000100882 Gm6588 protein_coding Interval_20672 chr10 120153812 120154159 + 0 NA intron (ENSMUSG00000020227.10, intron 8 of 11) protein_coding-intron (ENSMUSG00000020227.10, intron 8 of 11) -14664 ENSMUSG00000112894.1 ENSMUSG00000112894 ENSMUST00000220425 Gm47009 antisense Interval_107724 chr3 112043332 112043979 + 0 NA intron (ENSMUSG00000104543.1, intron 2 of 3) lincRNA-intron (ENSMUSG00000104543.1, intron 2 of 3) 155386 ENSMUSG00000089017.1 ENSMUSG00000089017 ENSMUST00000158392 Gm25519 snoRNA Interval_147100 chr7 62879425 62879646 + 0 NA Intergenic Intergenic -55862 ENSMUSG00000109344.1 ENSMUSG00000109344 ENSMUST00000207359 A26c2 protein_coding Interval_21224 chr10 127302918 127303750 + 0 NA intron (ENSMUSG00000040354.14, intron 10 of 21) protein_coding-intron (ENSMUSG00000040354.14, intron 10 of 20) 8452 ENSMUSG00000040354.14 ENSMUSG00000040354 ENSMUST00000128369 Mars1 protein_coding Interval_57209 chr15 7803556 7804940 + 0 NA Intergenic Intergenic -6598 ENSMUSG00000022144.4 ENSMUSG00000022144 ENSMUST00000022744 Gdnf protein_coding Interval_55346 chr14 84222726 84223750 + 0 NA Intergenic Intergenic -96364 ENSMUSG00000115612.1 ENSMUSG00000115612 ENSMUST00000228759 Gm29800 processed_pseudogene Interval_156148 chr8 45120145 45120355 + 0 NA intron (ENSMUSG00000110260.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000110260.1, intron 1 of 2) 35083 ENSMUSG00000054764.9 ENSMUSG00000054764 ENSMUST00000209488 Mtnr1a protein_coding Interval_13769 chr10 21920540 21920801 + 0 NA intron (ENSMUSG00000019970.15, intron 1 of 13) protein_coding-intron (ENSMUSG00000019970.15, intron 1 of 13) -41778 ENSMUSG00000080607.1 ENSMUSG00000080607 ENSMUST00000116957 Gm23839 snoRNA Interval_65680 chr16 25088228 25088491 + 0 NA Intergenic Intergenic 28720 ENSMUSG00000096960.1 ENSMUSG00000096960 ENSMUST00000181655 A230028O05Rik lincRNA Interval_112717 chr4 44371196 44372075 + 0 NA Intergenic Intergenic -11287 ENSMUSG00000083803.1 ENSMUSG00000083803 ENSMUST00000121242 Gm12455 processed_pseudogene Interval_127736 chr5 107216887 107218160 + 0 NA intron (ENSMUSG00000029287.14, intron 2 of 6) protein_coding-intron (ENSMUSG00000029287.14, intron 2 of 16) -24100 ENSMUSG00000084218.1 ENSMUSG00000084218 ENSMUST00000118220 Gm8145 processed_pseudogene Interval_169868 chr9 102636279 102637726 + 0 NA Intergenic Intergenic 8490 ENSMUSG00000035048.13 ENSMUSG00000035048 ENSMUST00000190354 Anapc13 protein_coding Interval_94854 chr2 97533860 97534620 + 0 NA intron (ENSMUSG00000050587.14, intron 1 of 1) protein_coding-intron (ENSMUSG00000050587.14, intron 1 of 2) 66151 ENSMUSG00000050587.14 ENSMUSG00000050587 ENSMUST00000170144 Lrrc4c protein_coding Interval_134916 chr6 33562582 33562844 + 0 NA intron (ENSMUSG00000029763.17, intron 9 of 12) protein_coding-intron (ENSMUSG00000029763.17, intron 9 of 17) 129441 ENSMUSG00000107103.1 ENSMUSG00000107103 ENSMUST00000202529 Gm43164 TEC Interval_47069 chr13 75227582 75228216 + 0 NA Intergenic Intergenic 28685 ENSMUSG00000113264.1 ENSMUSG00000113264 ENSMUST00000220533 Gm19095 processed_pseudogene Interval_140997 chr6 124142280 124142734 + 0 NA TTS (ENSMUSG00000088443.1) snoRNA-TTS (ENSMUSG00000088443.1) 322 ENSMUSG00000088443.1 ENSMUSG00000088443 ENSMUST00000157818 Gm23554 snoRNA Interval_101655 chr3 8594053 8595110 + 0 NA Intergenic Intergenic 21923 ENSMUSG00000098047.1 ENSMUSG00000098047 ENSMUST00000182857 Gm18822 processed_pseudogene Interval_375 chr1 4753369 4753586 + 0 NA Intergenic Intergenic -17654 ENSMUSG00000103922.1 ENSMUSG00000103922 ENSMUST00000193658 Gm6123 processed_pseudogene Interval_154724 chr8 22869268 22869773 + 0 NA intron (ENSMUSG00000031540.14, intron 2 of 17) protein_coding-intron (ENSMUSG00000031540.14, intron 3 of 17) -4069 ENSMUSG00000109652.1 ENSMUSG00000109652 ENSMUST00000210028 Gm45555 TEC Interval_151923 chr7 127562900 127563114 + 0 NA intron (ENSMUSG00000101845.1, intron 1 of 3) protein_coding-intron (ENSMUSG00000106715.3, intron 1 of 2) 1428 ENSMUSG00000106715.3 ENSMUSG00000106715 ENSMUST00000190278 Tmem265 protein_coding Interval_172740 chrX 48151920 48152919 + 0 NA intron (ENSMUSG00000031101.6, intron 1 of 7) protein_coding-intron (ENSMUSG00000031101.6, intron 1 of 7) 5983 ENSMUSG00000031101.6 ENSMUSG00000031101 ENSMUST00000033427 Sash3 protein_coding Interval_158836 chr8 87035960 87036525 + 0 NA Intergenic Intergenic -11447 ENSMUSG00000066362.5 ENSMUSG00000066362 ENSMUST00000183478 Rps13-ps1 processed_pseudogene Interval_19615 chr10 105799029 105800354 + 0 NA intron (ENSMUSG00000036009.16, intron 6 of 12) protein_coding-intron (ENSMUSG00000036009.16, intron 5 of 11) 4506 ENSMUSG00000084545.1 ENSMUSG00000084545 ENSMUST00000122596 n-R5s80 rRNA Interval_171857 chr9 121799329 121799711 + 0 NA intron (ENSMUSG00000079235.10, intron 3 of 4) protein_coding-intron (ENSMUSG00000079235.10, intron 4 of 5) -7666 ENSMUSG00000032523.11 ENSMUSG00000032523 ENSMUST00000217652 Hhatl protein_coding Interval_61318 chr15 80815570 80815965 + 0 NA intron (ENSMUSG00000047888.10, intron 1 of 17) protein_coding-intron (ENSMUSG00000047888.10, intron 4 of 24) 103496 ENSMUSG00000116480.1 ENSMUSG00000116480 ENSMUST00000230620 Gm49512 sense_intronic Interval_35002 chr12 16570301 16571945 + 0 NA intron (ENSMUSG00000020593.16, intron 6 of 20) protein_coding-intron (ENSMUSG00000020593.16, intron 6 of 20) 39843 ENSMUSG00000020593.16 ENSMUSG00000020593 ENSMUST00000221146 Lpin1 protein_coding Interval_16363 chr10 62496162 62496494 + 0 NA intron (ENSMUSG00000020077.14, intron 3 of 3) protein_coding-intron (ENSMUSG00000020077.14, intron 2 of 2) -9596 ENSMUSG00000020078.16 ENSMUSG00000020078 ENSMUST00000217868 Vps26a protein_coding Interval_100364 chr2 168660507 168660929 + 0 NA intron (ENSMUSG00000027546.15, intron 15 of 27) protein_coding-intron (ENSMUSG00000027546.15, intron 15 of 27) -19959 ENSMUSG00000105496.1 ENSMUSG00000105496 ENSMUST00000200215 Mir7004 miRNA Interval_80262 chr18 38600765 38602896 + 0 NA promoter-TSS (ENSMUSG00000024427.7) protein_coding-promoter-TSS (ENSMUSG00000024427.7) -415 ENSMUSG00000024427.7 ENSMUSG00000024427 ENSMUST00000025295 Spry4 protein_coding Interval_60023 chr15 64038683 64039281 + 0 NA intron (ENSMUSG00000022378.14, intron 1 of 12) protein_coding-intron (ENSMUSG00000022378.14, intron 1 of 11) 13034 ENSMUSG00000065936.1 ENSMUSG00000065936 ENSMUST00000084002 Gm25628 snRNA Interval_158179 chr8 79561524 79563305 + 0 NA Intergenic Intergenic -11666 ENSMUSG00000097975.1 ENSMUSG00000097975 ENSMUST00000182695 Gm8079 processed_pseudogene Interval_171935 chr9 122733282 122733573 + 0 NA Intergenic Intergenic -17176 ENSMUSG00000094985.2 ENSMUSG00000094985 ENSMUST00000213519 Topaz1 protein_coding Interval_97405 chr2 135802960 135803151 + 0 NA intron (ENSMUSG00000039943.16, intron 1 of 4) protein_coding-intron (ENSMUSG00000039943.16, intron 1 of 36) 9872 ENSMUSG00000086928.1 ENSMUSG00000086928 ENSMUST00000140949 Gm14210 lincRNA Interval_68325 chr16 73155217 73156312 + 0 NA intron (ENSMUSG00000116976.1, intron 2 of 2) processed_transcript-intron (ENSMUSG00000116976.1, intron 2 of 2) 83389 ENSMUSG00000116976.1 ENSMUSG00000116976 ENSMUST00000231486 4930500H12Rik processed_transcript Interval_36203 chr12 38906873 38907149 + 0 NA promoter-TSS (ENSMUSG00000113933.1) lincRNA-promoter-TSS (ENSMUSG00000113933.1) -58 ENSMUSG00000113933.1 ENSMUSG00000113933 ENSMUST00000223252 Gm34611 lincRNA Interval_116687 chr4 116655110 116655381 + 0 NA Intergenic Intergenic -5771 ENSMUSG00000028692.14 ENSMUSG00000028692 ENSMUST00000128059 Akr1a1 protein_coding Interval_133984 chr6 17316455 17317083 + 0 NA intron (ENSMUSG00000007655.16, intron 2 of 2) protein_coding-intron (ENSMUSG00000007655.16, intron 2 of 2) 10358 ENSMUSG00000007655.16 ENSMUSG00000007655 ENSMUST00000133065 Cav1 protein_coding Interval_76049 chr17 74583599 74584660 + 0 NA intron (ENSMUSG00000024073.16, intron 9 of 72) protein_coding-intron (ENSMUSG00000024073.16, intron 9 of 72) 32990 ENSMUSG00000097546.1 ENSMUSG00000097546 ENSMUST00000181387 Gm26749 antisense Interval_137053 chr6 66984945 66986785 + 0 NA intron (ENSMUSG00000036402.13, intron 3 of 4) protein_coding-intron (ENSMUSG00000036402.13, intron 3 of 4) 22548 ENSMUSG00000107634.1 ENSMUSG00000107634 ENSMUST00000204824 Gm36816 antisense Interval_95852 chr2 117275459 117276117 + 0 NA Intergenic Intergenic 17006 ENSMUSG00000027349.5 ENSMUSG00000027349 ENSMUST00000143612 Fam98b protein_coding Interval_118425 chr4 131409773 131410312 + 0 NA Intergenic Intergenic -77155 ENSMUSG00000078531.3 ENSMUSG00000078531 ENSMUST00000149942 Gm831 lincRNA Interval_29817 chr11 87022883 87023817 + 0 NA Intergenic Intergenic -26087 ENSMUSG00000088816.1 ENSMUSG00000088816 ENSMUST00000158191 Gm22387 scaRNA Interval_125242 chr5 65611062 65612060 + 0 NA exon (ENSMUSG00000029202.12, exon 1 of 1) protein_coding-exon (ENSMUSG00000029202.12, exon 1 of 1) -5388 ENSMUSG00000106767.1 ENSMUSG00000106767 ENSMUST00000202446 Gm42727 TEC Interval_79989 chr18 36515309 36516364 + 0 NA promoter-TSS (ENSMUSG00000024486.6) protein_coding-promoter-TSS (ENSMUSG00000024486.6) -469 ENSMUSG00000024486.6 ENSMUSG00000024486 ENSMUST00000236520 Hbegf protein_coding Interval_84622 chr19 14494765 14495016 + 0 NA intron (ENSMUSG00000024642.17, intron 7 of 19) protein_coding-intron (ENSMUSG00000024642.17, intron 8 of 19) 100649 ENSMUSG00000024642.17 ENSMUSG00000024642 ENSMUST00000235975 Tle4 protein_coding Interval_146447 chr7 45986234 45987552 + 0 NA intron (ENSMUSG00000030834.7, intron 22 of 30) protein_coding-intron (ENSMUSG00000030834.7, intron 22 of 30) 14176 ENSMUSG00000030834.7 ENSMUSG00000030834 ENSMUST00000211780 Abcc6 protein_coding Interval_130066 chr5 124050140 124050417 + 0 NA intron (ENSMUSG00000106261.1, intron 3 of 4) lincRNA-intron (ENSMUSG00000106261.1, intron 3 of 4) 2074 ENSMUSG00000104818.1 ENSMUSG00000104818 ENSMUST00000199099 Gm43661 lincRNA Interval_155288 chr8 30893227 30893948 + 0 NA Intergenic Intergenic -110321 ENSMUSG00000109614.1 ENSMUSG00000109614 ENSMUST00000211579 Gm45252 processed_pseudogene Interval_131413 chr5 137024323 137025600 + 0 NA Intergenic Intergenic -1431 ENSMUSG00000037428.14 ENSMUSG00000037428 ENSMUST00000187382 Vgf protein_coding Interval_100491 chr2 169556112 169556395 + 0 NA Intergenic Intergenic 31492 ENSMUSG00000078912.2 ENSMUSG00000078912 ENSMUST00000109160 Gm11011 protein_coding Interval_27610 chr11 69035602 69037983 + 0 NA TTS (ENSMUSG00000020898.18) protein_coding-TTS (ENSMUSG00000020898.18) 2271 ENSMUSG00000020898.18 ENSMUSG00000020898 ENSMUST00000161271 Ctc1 protein_coding Interval_40270 chr12 102947967 102950056 + 0 NA promoter-TSS (ENSMUSG00000021198.16) protein_coding-promoter-TSS (ENSMUSG00000021198.16) -38818 ENSMUSG00000105998.1 ENSMUSG00000105998 ENSMUST00000198517 Gm44324 miRNA Interval_142092 chr6 137107301 137108334 + 0 NA intron (ENSMUSG00000030222.13, intron 2 of 4) protein_coding-intron (ENSMUSG00000030222.13, intron 2 of 4) 32246 ENSMUSG00000030222.13 ENSMUSG00000030222 ENSMUST00000149100 Rerg protein_coding Interval_157786 chr8 73177364 73179106 + 0 NA intron (ENSMUSG00000004383.18, intron 3 of 15) protein_coding-intron (ENSMUSG00000004383.18, intron 2 of 14) -2977 ENSMUSG00000089447.1 ENSMUSG00000089447 ENSMUST00000158822 Gm22532 snoRNA Interval_43513 chr13 32338037 32339247 + 0 NA promoter-TSS (ENSMUSG00000038372.14) protein_coding-promoter-TSS (ENSMUSG00000038372.14) -18 ENSMUSG00000038372.14 ENSMUSG00000038372 ENSMUST00000179717 Gmds protein_coding Interval_61654 chr15 83223304 83224262 + 0 NA Intergenic Intergenic 27946 ENSMUSG00000047878.13 ENSMUSG00000047878 ENSMUST00000229454 A4galt protein_coding Interval_86510 chr19 41266075 41266948 + 0 NA Intergenic Intergenic -2531 ENSMUSG00000025016.11 ENSMUSG00000025016 ENSMUST00000237871 Tm9sf3 protein_coding Interval_35878 chr12 31531840 31532467 + 0 NA TTS (ENSMUSG00000020651.8) protein_coding-TTS (ENSMUSG00000020651.8) 4420 ENSMUSG00000020651.8 ENSMUSG00000020651 ENSMUST00000218992 Slc26a4 protein_coding Interval_27065 chr11 62645278 62646414 + 0 NA intron (ENSMUSG00000046417.14, intron 1 of 3) protein_coding-intron (ENSMUSG00000046417.14, intron 1 of 3) 2203 ENSMUSG00000046417.14 ENSMUSG00000046417 ENSMUST00000143262 Lrrc75a protein_coding Interval_29909 chr11 87689640 87690893 + 0 NA intron (ENSMUSG00000034177.15, intron 1 of 7) protein_coding-intron (ENSMUSG00000034177.15, intron 1 of 8) 4315 ENSMUSG00000087792.1 ENSMUSG00000087792 ENSMUST00000157167 Gm25968 snRNA Interval_82830 chr18 77272515 77273147 + 0 NA Intergenic Intergenic -9127 ENSMUSG00000032818.16 ENSMUSG00000032818 ENSMUST00000123166 Loxhd1 protein_coding Interval_161384 chr8 120113515 120114818 + 0 NA promoter-TSS (ENSMUSG00000031824.15) protein_coding-promoter-TSS (ENSMUSG00000031824.15) 14 ENSMUSG00000031824.15 ENSMUSG00000031824 ENSMUST00000212268 6430548M08Rik protein_coding Interval_137343 chr6 71543598 71544962 + 0 NA promoter-TSS (ENSMUSG00000053119.11) protein_coding-promoter-TSS (ENSMUSG00000053119.11) -166 ENSMUSG00000107406.1 ENSMUSG00000107406 ENSMUST00000205011 1700040L08Rik antisense Interval_81489 chr18 61085869 61086326 + 0 NA Intergenic Intergenic -14501 ENSMUSG00000024621.16 ENSMUSG00000024621 ENSMUST00000237485 Csf1r protein_coding Interval_171567 chr9 119236402 119236653 + 0 NA intron (ENSMUSG00000070280.13, intron 1 of 10) protein_coding-intron (ENSMUSG00000070280.13, intron 1 of 10) -4835 ENSMUSG00000092212.3 ENSMUSG00000092212 ENSMUST00000173185 Slc22a13b polymorphic_pseudogene Interval_85079 chr19 22320898 22321155 + 0 NA intron (ENSMUSG00000052387.16, intron 1 of 24) protein_coding-intron (ENSMUSG00000052387.16, intron 1 of 24) -85408 ENSMUSG00000088558.1 ENSMUSG00000088558 ENSMUST00000157933 Gm22506 snoRNA Interval_81209 chr18 56498641 56499053 + 0 NA intron (ENSMUSG00000001700.10, intron 13 of 13) protein_coding-intron (ENSMUSG00000001700.10, intron 13 of 13) -19393 ENSMUSG00000118186.1 ENSMUSG00000118186 ENSMUST00000235656 Gm8642 processed_pseudogene Interval_22644 chr11 12456859 12457123 + 0 NA intron (ENSMUSG00000020173.17, intron 1 of 11) protein_coding-intron (ENSMUSG00000020173.17, intron 1 of 14) -44847 ENSMUSG00000020173.17 ENSMUSG00000020173 ENSMUST00000146067 Cobl protein_coding Interval_27802 chr11 70074397 70075097 + 0 NA Intergenic Intergenic 20662 ENSMUSG00000020884.15 ENSMUSG00000020884 ENSMUST00000123369 Asgr1 protein_coding Interval_152455 chr7 133095339 133096300 + 0 NA intron (ENSMUSG00000030970.16, intron 1 of 6) protein_coding-intron (ENSMUSG00000030970.16, intron 1 of 10) 24452 ENSMUSG00000110282.1 ENSMUSG00000110282 ENSMUST00000209529 B930086L07Rik TEC Interval_3912 chr1 64731679 64734058 + 0 NA exon (ENSMUSG00000045005.9, exon 2 of 2) protein_coding-exon (ENSMUSG00000045005.9, exon 2 of 2) -3372 ENSMUSG00000102140.1 ENSMUSG00000102140 ENSMUST00000194323 Gm38058 TEC Interval_17077 chr10 71215951 71218687 + 0 NA Intergenic Intergenic 19723 ENSMUSG00000003923.14 ENSMUSG00000003923 ENSMUST00000152505 Tfam protein_coding Interval_148180 chr7 79676609 79676934 + 0 NA intron (ENSMUSG00000046591.10, intron 5 of 12) protein_coding-intron (ENSMUSG00000046591.10, intron 6 of 21) 5850 ENSMUSG00000046591.10 ENSMUSG00000046591 ENSMUST00000206677 Ticrr protein_coding Interval_111434 chr4 21619674 21620804 + 0 NA Intergenic Intergenic -6141 ENSMUSG00000083654.1 ENSMUSG00000083654 ENSMUST00000118187 Gm11875 processed_pseudogene Interval_120304 chr4 145304542 145306796 + 0 NA intron (ENSMUSG00000028602.12, intron 1 of 12) protein_coding-intron (ENSMUSG00000028602.12, intron 1 of 12) 9495 ENSMUSG00000028602.12 ENSMUSG00000028602 ENSMUST00000123027 Tnfrsf8 protein_coding Interval_57368 chr15 10060472 10060683 + 0 NA Intergenic Intergenic 8751 ENSMUSG00000088156.1 ENSMUSG00000088156 ENSMUST00000157531 Gm26350 misc_RNA Interval_99357 chr2 160110687 160111791 + 0 NA Intergenic Intergenic 94586 ENSMUSG00000086653.1 ENSMUSG00000086653 ENSMUST00000140319 9130015L21Rik lincRNA Interval_131418 chr5 137054004 137054595 + 0 NA Intergenic Intergenic -16649 ENSMUSG00000004849.14 ENSMUSG00000004849 ENSMUST00000129356 Ap1s1 protein_coding Interval_36413 chr12 44166535 44167194 + 0 NA Intergenic Intergenic 36307 ENSMUSG00000111920.1 ENSMUSG00000111920 ENSMUST00000219471 Gm7370 processed_pseudogene Interval_56731 chr14 121716689 121717498 + 0 NA intron (ENSMUSG00000025558.19, intron 1 of 52) protein_coding-intron (ENSMUSG00000025558.19, intron 1 of 52) 21768 ENSMUSG00000025558.19 ENSMUSG00000025558 ENSMUST00000238406 Dock9 protein_coding Interval_97474 chr2 136995540 136996378 + 0 NA intron (ENSMUSG00000027281.16, intron 4 of 4) protein_coding-intron (ENSMUSG00000027281.16, intron 2 of 5) 89990 ENSMUSG00000027276.7 ENSMUSG00000027276 ENSMUST00000133640 Jag1 protein_coding Interval_78874 chr18 21083372 21086283 + 0 NA TTS (ENSMUSG00000024313.8) protein_coding-TTS (ENSMUSG00000024313.8) -7718 ENSMUSG00000062962.5 ENSMUSG00000062962 ENSMUST00000084199 Gm6378 processed_pseudogene Interval_75836 chr17 71707711 71708672 + 0 NA intron (ENSMUSG00000045761.16, intron 13 of 19) protein_coding-intron (ENSMUSG00000045761.16, intron 13 of 19) 9626 ENSMUSG00000089779.1 ENSMUSG00000089779 ENSMUST00000161407 Gm15641 antisense Interval_18964 chr10 93431966 93433022 + 0 NA promoter-TSS (ENSMUSG00000098679.1) miRNA-promoter-TSS (ENSMUSG00000098679.1) -613 ENSMUSG00000098679.1 ENSMUSG00000098679 ENSMUST00000183565 Mir7688 miRNA Interval_140524 chr6 119233145 119233528 + 0 NA Intergenic Intergenic -3190 ENSMUSG00000041460.16 ENSMUSG00000041460 ENSMUST00000185965 Cacna2d4 protein_coding Interval_86416 chr19 40338306 40338686 + 0 NA intron (ENSMUSG00000025006.18, intron 8 of 19) protein_coding-intron (ENSMUSG00000025006.18, intron 11 of 21) 38378 ENSMUSG00000025006.18 ENSMUSG00000025006 ENSMUST00000225293 Sorbs1 protein_coding Interval_150062 chr7 105521820 105522128 + 0 NA Intergenic Intergenic -33717 ENSMUSG00000037049.9 ENSMUSG00000037049 ENSMUST00000211307 Smpd1 protein_coding Interval_18363 chr10 85220590 85221885 + 0 NA exon (ENSMUSG00000111752.1, exon 3 of 3) processed_transcript-exon (ENSMUSG00000111752.1, exon 3 of 3) 45085 ENSMUSG00000111752.1 ENSMUSG00000111752 ENSMUST00000213881 Gm38575 processed_transcript Interval_94267 chr2 87217529 87217900 + 0 NA Intergenic Intergenic -8329 ENSMUSG00000111248.1 ENSMUSG00000111248 ENSMUST00000213896 Olfr1114-ps1 unprocessed_pseudogene Interval_65504 chr16 22876374 22876787 + 0 NA intron (ENSMUSG00000116831.1, intron 3 of 3) protein_coding-intron (ENSMUSG00000004460.17, intron 10 of 10) 17806 ENSMUSG00000116831.1 ENSMUSG00000116831 ENSMUST00000231692 Gm30505 antisense Interval_13432 chr10 18194202 18195058 + 0 NA intron (ENSMUSG00000071392.6, intron 2 of 20) protein_coding-intron (ENSMUSG00000071392.6, intron 3 of 20) 21705 ENSMUSG00000059554.12 ENSMUSG00000059554 ENSMUST00000052648 Ccdc28a protein_coding Interval_25428 chr11 48177146 48177381 + 0 NA Intergenic Intergenic 113050 ENSMUSG00000081952.1 ENSMUSG00000081952 ENSMUST00000120545 Gm12178 processed_pseudogene Interval_93085 chr2 70006641 70006865 + 0 NA intron (ENSMUSG00000044308.17, intron 5 of 5) protein_coding-intron (ENSMUSG00000044308.17, intron 31 of 38) 17967 ENSMUSG00000044308.17 ENSMUSG00000044308 ENSMUST00000123890 Ubr3 protein_coding Interval_76968 chr17 85244200 85244430 + 0 NA intron (ENSMUSG00000071037.6, intron 3 of 10) protein_coding-intron (ENSMUSG00000071037.6, intron 3 of 10) 153709 ENSMUSG00000071037.6 ENSMUSG00000071037 ENSMUST00000234501 Camkmt protein_coding Interval_169371 chr9 96751884 96754238 + 0 NA promoter-TSS (ENSMUSG00000040433.16) protein_coding-promoter-TSS (ENSMUSG00000040433.16) -230 ENSMUSG00000040433.16 ENSMUSG00000040433 ENSMUST00000143403 Zbtb38 protein_coding Interval_137382 chr6 71830932 71832057 + 0 NA promoter-TSS (ENSMUSG00000052337.15) protein_coding-promoter-TSS (ENSMUSG00000052337.15) 216 ENSMUSG00000108466.1 ENSMUSG00000108466 ENSMUST00000206975 Gm44771 TEC Interval_109466 chr3 142710796 142711051 + 0 NA intron (ENSMUSG00000040213.13, intron 2 of 13) protein_coding-intron (ENSMUSG00000040213.13, intron 2 of 13) 9837 ENSMUSG00000040213.13 ENSMUSG00000040213 ENSMUST00000128096 Kyat3 protein_coding Interval_110367 chr3 157494868 157495255 + 0 NA Intergenic Intergenic 39029 ENSMUSG00000105834.1 ENSMUSG00000105834 ENSMUST00000196791 4930592C13Rik antisense Interval_80764 chr18 46918789 46922389 + 0 NA Intergenic Intergenic -1226 ENSMUSG00000073568.2 ENSMUSG00000073568 ENSMUST00000097580 Arl14epl protein_coding Interval_116037 chr4 107156454 107157381 + 0 NA intron (ENSMUSG00000028619.15, intron 2 of 3) protein_coding-intron (ENSMUSG00000028619.15, intron 3 of 4) 21291 ENSMUSG00000028619.15 ENSMUSG00000028619 ENSMUST00000131474 Tceanc2 protein_coding Interval_108437 chr3 127205122 127205773 + 0 NA intron (ENSMUSG00000032826.19, intron 1 of 31) protein_coding-intron (ENSMUSG00000032826.19, intron 3 of 14) -21474 ENSMUSG00000105202.1 ENSMUSG00000105202 ENSMUST00000197856 C230031I18Rik TEC Interval_118143 chr4 129209370 129210019 + 0 NA exon (ENSMUSG00000028811.12, exon 7 of 13) protein_coding-exon (ENSMUSG00000028811.12, exon 7 of 13) -2550 ENSMUSG00000028811.12 ENSMUSG00000028811 ENSMUST00000147248 Yars protein_coding Interval_68884 chr16 87768026 87768546 + 0 NA Intergenic Intergenic -6643 ENSMUSG00000088684.1 ENSMUSG00000088684 ENSMUST00000158059 Gm23994 snoRNA Interval_102387 chr3 23271867 23272075 + 0 NA Intergenic Intergenic 103346 ENSMUSG00000102214.1 ENSMUSG00000102214 ENSMUST00000191948 Gm37492 processed_pseudogene Interval_55539 chr14 91279679 91280162 + 0 NA Intergenic Intergenic -80042 ENSMUSG00000115225.1 ENSMUSG00000115225 ENSMUST00000226887 Gm7272 processed_pseudogene Interval_129218 chr5 118261329 118261571 + 0 NA exon (ENSMUSG00000032840.7, exon 5 of 5) protein_coding-exon (ENSMUSG00000032840.7, exon 5 of 5) -4999 ENSMUSG00000095477.1 ENSMUSG00000095477 ENSMUST00000104098 Gm25076 snoRNA Interval_155809 chr8 39014906 39015919 + 0 NA intron (ENSMUSG00000039530.17, intron 1 of 7) protein_coding-intron (ENSMUSG00000039530.17, intron 1 of 9) 9504 ENSMUSG00000039530.17 ENSMUSG00000039530 ENSMUST00000210890 Tusc3 protein_coding Interval_109982 chr3 152291395 152291610 + 0 NA intron (ENSMUSG00000054942.13, intron 1 of 1) protein_coding-intron (ENSMUSG00000054942.13, intron 8 of 13) -25734 ENSMUSG00000039103.12 ENSMUSG00000039103 ENSMUST00000199752 Nexn protein_coding Interval_48479 chr13 99352996 99353838 + 0 NA intron (ENSMUSG00000041632.7, intron 2 of 5) protein_coding-intron (ENSMUSG00000041632.7, intron 2 of 10) 7873 ENSMUSG00000041632.7 ENSMUSG00000041632 ENSMUST00000225973 Mrps27 protein_coding Interval_32774 chr11 110463884 110464791 + 0 NA intron (ENSMUSG00000020623.11, intron 1 of 11) protein_coding-intron (ENSMUSG00000020623.11, intron 1 of 11) -13040 ENSMUSG00000020623.11 ENSMUSG00000020623 ENSMUST00000133920 Map2k6 protein_coding Interval_92831 chr2 66047401 66047663 + 0 NA Intergenic Intergenic 47692 ENSMUSG00000026994.9 ENSMUSG00000026994 ENSMUST00000153563 Galnt3 protein_coding Interval_154790 chr8 23387327 23388167 + 0 NA Intergenic Intergenic -23755 ENSMUSG00000031548.7 ENSMUSG00000031548 ENSMUST00000033952 Sfrp1 protein_coding Interval_31856 chr11 103396589 103396967 + 0 NA intron (ENSMUSG00000034247.9, intron 3 of 11) protein_coding-intron (ENSMUSG00000034247.9, intron 3 of 11) -2010 ENSMUSG00000034247.9 ENSMUSG00000034247 ENSMUST00000184350 Plekhm1 protein_coding Interval_16400 chr10 62736305 62738427 + 0 NA Intergenic Intergenic -11565 ENSMUSG00000036923.12 ENSMUSG00000036923 ENSMUST00000126979 Stox1 protein_coding Interval_112483 chr4 41526824 41527294 + 0 NA intron (ENSMUSG00000028439.14, intron 1 of 5) protein_coding-intron (ENSMUSG00000028439.14, intron 1 of 5) 6365 ENSMUSG00000087623.1 ENSMUSG00000087623 ENSMUST00000122839 Gm12404 processed_transcript Interval_37075 chr12 57468270 57468469 + 0 NA intron (ENSMUSG00000047022.18, intron 11 of 11) protein_coding-intron (ENSMUSG00000047022.18, intron 10 of 10) -18249 ENSMUSG00000086372.1 ENSMUSG00000086372 ENSMUST00000145464 Gm16246 antisense Interval_138758 chr6 91665884 91667459 + 0 NA Intergenic Intergenic 12552 ENSMUSG00000108751.1 ENSMUSG00000108751 ENSMUST00000206576 Gm45217 TEC Interval_25321 chr11 46300924 46302127 + 0 NA intron (ENSMUSG00000020340.16, intron 1 of 30) protein_coding-intron (ENSMUSG00000020340.16, intron 1 of 30) 10833 ENSMUSG00000020340.16 ENSMUSG00000020340 ENSMUST00000129474 Cyfip2 protein_coding Interval_107835 chr3 116016063 116016339 + 0 NA intron (ENSMUSG00000027963.14, intron 3 of 3) protein_coding-intron (ENSMUSG00000027963.14, intron 2 of 4) 8373 ENSMUSG00000027963.14 ENSMUSG00000027963 ENSMUST00000106502 Extl2 protein_coding Interval_91923 chr2 51530871 51531855 + 0 NA Intergenic Intergenic -13612 ENSMUSG00000084334.1 ENSMUSG00000084334 ENSMUST00000120828 Gm13494 processed_pseudogene Interval_82028 chr18 67260038 67260658 + 0 NA Intergenic Intergenic -14907 ENSMUSG00000062526.4 ENSMUSG00000062526 ENSMUST00000237631 Mppe1 protein_coding Interval_132316 chr5 144117828 144118695 + 0 NA intron (ENSMUSG00000038970.7, intron 1 of 13) protein_coding-intron (ENSMUSG00000038970.7, intron 1 of 13) -6489 ENSMUSG00000098039.1 ENSMUSG00000098039 ENSMUST00000182470 Gm26925 processed_pseudogene Interval_6182 chr1 99970560 99971078 + 0 NA intron (ENSMUSG00000067028.11, intron 3 of 23) protein_coding-intron (ENSMUSG00000067028.11, intron 3 of 23) -35202 ENSMUSG00000100662.1 ENSMUSG00000100662 ENSMUST00000189923 Gm19029 processed_pseudogene Interval_60748 chr15 76504775 76505012 + 0 NA promoter-TSS (ENSMUSG00000022555.12) protein_coding-promoter-TSS (ENSMUSG00000022555.12) 5246 ENSMUSG00000022556.11 ENSMUSG00000022556 ENSMUST00000228688 Hsf1 protein_coding Interval_133214 chr5 150614182 150614470 + 0 NA intron (ENSMUSG00000029655.17, intron 3 of 3) protein_coding-intron (ENSMUSG00000029655.17, intron 3 of 3) -7443 ENSMUSG00000107096.3 ENSMUSG00000107096 ENSMUST00000202860 Gm43597 lincRNA Interval_50384 chr14 12333633 12333874 + 0 NA TTS (ENSMUSG00000077158.1) snoRNA-TTS (ENSMUSG00000077158.1) 151 ENSMUSG00000077158.1 ENSMUSG00000077158 ENSMUST00000103970 Gm24578 snoRNA Interval_59663 chr15 57712305 57712503 + 0 NA intron (ENSMUSG00000071757.10, intron 1 of 2) protein_coding-intron (ENSMUSG00000071757.10, intron 1 of 3) -3477 ENSMUSG00000090002.1 ENSMUSG00000090002 ENSMUST00000160938 Gm16006 antisense Interval_14937 chr10 41278267 41279084 + 0 NA intron (ENSMUSG00000038417.4, intron 3 of 22) protein_coding-intron (ENSMUSG00000038417.4, intron 3 of 22) 24585 ENSMUSG00000038417.4 ENSMUSG00000038417 ENSMUST00000043814 Fig4 protein_coding Interval_144233 chr7 23431891 23432219 + 0 NA intron (ENSMUSG00000015721.18, intron 10 of 13) protein_coding-intron (ENSMUSG00000015721.18, intron 12 of 15) 14171 ENSMUSG00000015721.18 ENSMUSG00000015721 ENSMUST00000207536 Nlrp5 protein_coding Interval_159580 chr8 95599857 95600138 + 0 NA intron (ENSMUSG00000110447.1, intron 1 of 3) lincRNA-intron (ENSMUSG00000110447.1, intron 1 of 4) -1522 ENSMUSG00000110447.1 ENSMUSG00000110447 ENSMUST00000213069 Gm31518 lincRNA Interval_158586 chr8 84638528 84639927 + 0 NA intron (ENSMUSG00000034656.18, intron 1 of 1) protein_coding-intron (ENSMUSG00000034656.18, intron 46 of 46) -22043 ENSMUSG00000086067.1 ENSMUSG00000086067 ENSMUST00000127527 Gm16183 antisense Interval_48439 chr13 99037077 99039306 + 0 NA Intergenic Intergenic 2459 ENSMUSG00000089488.1 ENSMUSG00000089488 ENSMUST00000158863 Gm24733 misc_RNA Interval_27253 chr11 64969730 64969972 + 0 NA Intergenic Intergenic -9221 ENSMUSG00000020549.14 ENSMUSG00000020549 ENSMUST00000128693 Elac2 protein_coding Interval_96187 chr2 120380294 120380515 + 0 NA TTS (ENSMUSG00000033808.16) protein_coding-TTS (ENSMUSG00000033808.16) 23709 ENSMUSG00000033808.16 ENSMUSG00000033808 ENSMUST00000143182 Tmem87a protein_coding Interval_126955 chr5 98310200 98310809 + 0 NA Intergenic Intergenic -18852 ENSMUSG00000057816.7 ENSMUSG00000057816 ENSMUST00000196339 Cfap299 protein_coding Interval_82725 chr18 76209335 76209884 + 0 NA Intergenic Intergenic 14574 ENSMUSG00000118294.1 ENSMUSG00000118294 ENSMUST00000237277 Gm9028 processed_pseudogene Interval_68218 chr16 68915533 68916529 + 0 NA Intergenic Intergenic 14135 ENSMUSG00000088288.1 ENSMUSG00000088288 ENSMUST00000157663 Gm23591 misc_RNA Interval_49877 chr13 117547156 117547829 + 0 NA Intergenic Intergenic -54828 ENSMUSG00000021730.8 ENSMUSG00000021730 ENSMUST00000006991 Hcn1 protein_coding Interval_89346 chr2 19596104 19596768 + 0 NA Intergenic Intergenic 40550 ENSMUSG00000086621.1 ENSMUSG00000086621 ENSMUST00000147324 Gm13348 antisense Interval_163160 chr9 16014095 16014441 + 0 NA intron (ENSMUSG00000074505.6, intron 7 of 25) protein_coding-intron (ENSMUSG00000074505.6, intron 6 of 24) -139712 ENSMUSG00000050901.6 ENSMUSG00000050901 ENSMUST00000057920 Mtnr1b protein_coding Interval_69871 chr16 97763003 97764181 + 0 NA exon (ENSMUSG00000005251.15, exon 1 of 8) protein_coding-exon (ENSMUSG00000005251.15, exon 1 of 8) 195 ENSMUSG00000005251.15 ENSMUSG00000005251 ENSMUST00000019386 Ripk4 protein_coding Interval_97200 chr2 132208230 132208701 + 0 NA intron (ENSMUSG00000086756.1, intron 2 of 2) antisense-intron (ENSMUSG00000086756.1, intron 2 of 2) 39323 ENSMUSG00000027341.10 ENSMUSG00000027341 ENSMUST00000141813 Tmem230 protein_coding Interval_125322 chr5 66190233 66191337 + 0 NA intron (ENSMUSG00000107014.1, intron 1 of 2) antisense-intron (ENSMUSG00000107014.1, intron 1 of 2) 551 ENSMUSG00000107014.1 ENSMUSG00000107014 ENSMUST00000201903 1700126H18Rik antisense Interval_89516 chr2 21492725 21493509 + 0 NA intron (ENSMUSG00000045967.11, intron 2 of 7) protein_coding-intron (ENSMUSG00000045967.11, intron 2 of 10) -49588 ENSMUSG00000080846.1 ENSMUSG00000080846 ENSMUST00000118053 Gm13379 processed_pseudogene Interval_61217 chr15 80049970 80050528 + 0 NA Intergenic Intergenic 28342 ENSMUSG00000077734.1 ENSMUSG00000077734 ENSMUST00000104546 Snord83b snoRNA Interval_112306 chr4 40238464 40240465 + 0 NA intron (ENSMUSG00000040296.15, intron 1 of 3) protein_coding-intron (ENSMUSG00000040296.15, intron 1 of 17) 361 ENSMUSG00000040296.15 ENSMUSG00000040296 ENSMUST00000149539 Ddx58 protein_coding Interval_145951 chr7 42591316 42593424 + 0 NA intron (ENSMUSG00000092335.1, intron 1 of 3) protein_coding-intron (ENSMUSG00000092335.1, intron 1 of 3) 177 ENSMUSG00000092335.1 ENSMUSG00000092335 ENSMUST00000173283 Zfp977 protein_coding Interval_57559 chr15 12341616 12341879 + 0 NA intron (ENSMUSG00000022200.8, intron 2 of 4) protein_coding-intron (ENSMUSG00000022200.8, intron 2 of 3) -19848 ENSMUSG00000097221.1 ENSMUSG00000097221 ENSMUST00000180521 1810049J17Rik protein_coding Interval_54661 chr14 73031394 73031698 + 0 NA intron (ENSMUSG00000033470.12, intron 5 of 7) protein_coding-intron (ENSMUSG00000033470.12, intron 5 of 5) 17568 ENSMUSG00000033470.12 ENSMUSG00000033470 ENSMUST00000228821 Cysltr2 protein_coding Interval_95764 chr2 115968870 115970116 + 0 NA intron (ENSMUSG00000027210.20, intron 3 of 3) protein_coding-intron (ENSMUSG00000027210.20, intron 8 of 11) 97951 ENSMUSG00000086328.1 ENSMUSG00000086328 ENSMUST00000140185 2700033N17Rik lincRNA Interval_60981 chr15 78479875 78480671 + 0 NA exon (ENSMUSG00000068227.9, exon 10 of 10) protein_coding-exon (ENSMUSG00000068227.9, exon 10 of 10) 13483 ENSMUSG00000068227.9 ENSMUSG00000068227 ENSMUST00000163494 Il2rb protein_coding Interval_49898 chr13 118022374 118023862 + 0 NA Intergenic Intergenic -13496 ENSMUSG00000088155.1 ENSMUSG00000088155 ENSMUST00000157530 Gm26349 snoRNA Interval_135153 chr6 36992499 36993264 + 0 NA intron (ENSMUSG00000038665.15, intron 20 of 32) protein_coding-intron (ENSMUSG00000038665.15, intron 20 of 32) 36031 ENSMUSG00000107310.1 ENSMUSG00000107310 ENSMUST00000202891 Gm7452 transcribed_processed_pseudogene Interval_9514 chr1 158294698 158295966 + 0 NA TTS (ENSMUSG00000004031.13) protein_coding-TTS (ENSMUSG00000004031.13) 60897 ENSMUSG00000004031.13 ENSMUSG00000004031 ENSMUST00000192709 Brinp2 protein_coding Interval_24334 chr11 32468106 32468826 + 0 NA intron (ENSMUSG00000044949.4, intron 1 of 2) protein_coding-intron (ENSMUSG00000044949.4, intron 1 of 2) 13096 ENSMUSG00000044949.4 ENSMUSG00000044949 ENSMUST00000051053 Ubtd2 protein_coding Interval_42997 chr13 22748672 22748920 + 0 NA Intergenic Intergenic -10131 ENSMUSG00000080730.1 ENSMUSG00000080730 ENSMUST00000118779 Gm11313 processed_pseudogene Interval_81832 chr18 65113740 65114116 + 0 NA intron (ENSMUSG00000024589.18, intron 1 of 1) protein_coding-intron (ENSMUSG00000024589.18, intron 4 of 29) 30874 ENSMUSG00000024589.18 ENSMUSG00000024589 ENSMUST00000236100 Nedd4l protein_coding Interval_173060 chrX 69147052 69147668 + 0 NA Intergenic Intergenic -197676 ENSMUSG00000065689.1 ENSMUSG00000065689 ENSMUST00000083755 n-R5s7 rRNA Interval_142778 chr6 145578433 145578850 + 0 NA intron (ENSMUSG00000054966.13, intron 1 of 10) protein_coding-intron (ENSMUSG00000054966.13, intron 1 of 1) -37116 ENSMUSG00000067338.6 ENSMUSG00000067338 ENSMUST00000087445 Tuba3b protein_coding Interval_141342 chr6 127453265 127454226 + 0 NA promoter-TSS (ENSMUSG00000037997.12) protein_coding-promoter-TSS (ENSMUSG00000037997.12) -17782 ENSMUSG00000037997.12 ENSMUSG00000037997 ENSMUST00000134018 Parp11 protein_coding Interval_142027 chr6 136610799 136611169 + 0 NA TTS (ENSMUSG00000030213.12) protein_coding-TTS (ENSMUSG00000030213.12) -9648 ENSMUSG00000107760.1 ENSMUSG00000107760 ENSMUST00000204462 Gm44401 TEC Interval_113720 chr4 57841620 57842729 + 0 NA intron (ENSMUSG00000038729.24, intron 1 of 1) protein_coding-intron (ENSMUSG00000038729.24, intron 2 of 2) 21124 ENSMUSG00000038729.24 ENSMUSG00000038729 ENSMUST00000102902 Pakap protein_coding Interval_23636 chr11 24001636 24001826 + 0 NA Intergenic Intergenic -12924 ENSMUSG00000104783.1 ENSMUSG00000104783 ENSMUST00000199670 Gm44381 miRNA Interval_14315 chr10 30780504 30781463 + 0 NA exon (ENSMUSG00000110744.1, exon 1 of 1) processed_pseudogene-exon (ENSMUSG00000110744.1, exon 1 of 1) 1288 ENSMUSG00000110744.1 ENSMUSG00000110744 ENSMUST00000214944 Gm5171 processed_pseudogene Interval_149111 chr7 93564912 93565182 + 0 NA exon (ENSMUSG00000109077.1, exon 1 of 1) processed_pseudogene-exon (ENSMUSG00000109077.1, exon 1 of 1) 648 ENSMUSG00000109077.1 ENSMUSG00000109077 ENSMUST00000208293 Gm8285 processed_pseudogene Interval_153468 chr7 145010276 145011239 + 0 NA Intergenic Intergenic -70832 ENSMUSG00000070348.5 ENSMUSG00000070348 ENSMUST00000135985 Ccnd1 protein_coding Interval_130795 chr5 130592970 130593181 + 0 NA intron (ENSMUSG00000060371.12, intron 2 of 2) protein_coding-intron (ENSMUSG00000060371.12, intron 3 of 6) 25476 ENSMUSG00000106849.1 ENSMUSG00000106849 ENSMUST00000201334 Gm43418 TEC Interval_70069 chr17 5125186 5126228 + 0 NA intron (ENSMUSG00000069729.14, intron 3 of 19) protein_coding-intron (ENSMUSG00000069729.14, intron 3 of 18) -13597 ENSMUSG00000081783.2 ENSMUSG00000081783 ENSMUST00000122283 Gm15599 processed_pseudogene Interval_163787 chr9 25743703 25744856 + 0 NA Intergenic Intergenic -13276 ENSMUSG00000111416.1 ENSMUSG00000111416 ENSMUST00000215068 Gm48331 processed_pseudogene Interval_58411 chr15 34284386 34285600 + 0 NA TTS (ENSMUSG00000022257.4) protein_coding-TTS (ENSMUSG00000022257.4) 3877 ENSMUSG00000084738.2 ENSMUSG00000084738 ENSMUST00000122789 Gm25809 snoRNA Interval_86870 chr19 44505395 44505593 + 0 NA intron (ENSMUSG00000036961.5, intron 1 of 5) protein_coding-intron (ENSMUSG00000036961.5, intron 1 of 5) -4827 ENSMUSG00000036961.5 ENSMUSG00000036961 ENSMUST00000237970 Wnt8b protein_coding Interval_156098 chr8 44472163 44472494 + 0 NA Intergenic Intergenic 75746 ENSMUSG00000092685.1 ENSMUSG00000092685 ENSMUST00000174944 Gm26241 miRNA Interval_90839 chr2 32912374 32912709 + 0 NA TTS (ENSMUSG00000026796.16) protein_coding-TTS (ENSMUSG00000026796.16) -2170 ENSMUSG00000026796.16 ENSMUSG00000026796 ENSMUST00000151607 Fam129b protein_coding Interval_69250 chr16 91676055 91676777 + 0 NA TTS (ENSMUSG00000022960.13) protein_coding-TTS (ENSMUSG00000022960.13) 4153 ENSMUSG00000022961.18 ENSMUSG00000022961 ENSMUST00000151503 Son protein_coding Interval_109411 chr3 142002469 142003928 + 0 NA intron (ENSMUSG00000052430.15, intron 1 of 11) protein_coding-intron (ENSMUSG00000052430.15, intron 2 of 11) -71690 ENSMUSG00000052430.15 ENSMUSG00000052430 ENSMUST00000106230 Bmpr1b protein_coding Interval_139419 chr6 99987686 99988073 + 0 NA intron (ENSMUSG00000108151.1, intron 1 of 3) lincRNA-intron (ENSMUSG00000108151.1, intron 1 of 3) 3336 ENSMUSG00000108151.1 ENSMUSG00000108151 ENSMUST00000204791 Gm33201 lincRNA Interval_141632 chr6 131528460 131529024 + 0 NA intron (ENSMUSG00000094113.7, intron 3 of 4) protein_coding-intron (ENSMUSG00000094113.7, intron 3 of 4) -4180 ENSMUSG00000077015.1 ENSMUSG00000077015 ENSMUST00000103827 Gm22190 miRNA Interval_42786 chr13 19459974 19460168 + 0 NA Intergenic Intergenic 44296 ENSMUSG00000114189.1 ENSMUSG00000114189 ENSMUST00000221601 9330199G10Rik lincRNA Interval_47291 chr13 80810366 80810713 + 0 NA Intergenic Intergenic 74985 ENSMUSG00000089827.1 ENSMUSG00000089827 ENSMUST00000161006 1700023H06Rik processed_transcript Interval_49757 chr13 114594131 114594427 + 0 NA intron (ENSMUSG00000114879.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000114879.1, intron 1 of 1) 12805 ENSMUSG00000114879.1 ENSMUSG00000114879 ENSMUST00000224961 4930467J12Rik lincRNA Interval_75318 chr17 65850069 65850266 + 0 NA exon (ENSMUSG00000024096.17, exon 10 of 10) protein_coding-exon (ENSMUSG00000024096.17, exon 10 of 10) 21219 ENSMUSG00000061950.17 ENSMUSG00000061950 ENSMUST00000162703 Ppp4r1 protein_coding Interval_51463 chr14 27740274 27740458 + 0 NA intron (ENSMUSG00000040640.11, intron 1 of 7) protein_coding-intron (ENSMUSG00000040640.11, intron 2 of 15) 25989 ENSMUSG00000114653.1 ENSMUSG00000114653 ENSMUST00000224481 Gm18398 processed_pseudogene Interval_13910 chr10 24584794 24585576 + 0 NA intron (ENSMUSG00000087400.8, intron 1 of 3) processed_transcript-intron (ENSMUSG00000087400.8, intron 1 of 3) -10541 ENSMUSG00000019997.11 ENSMUSG00000019997 ENSMUST00000129142 Ccn2 protein_coding Interval_88024 chr19 58060664 58061173 + 0 NA intron (ENSMUSG00000054843.9, intron 28 of 28) protein_coding-intron (ENSMUSG00000054843.9, intron 28 of 28) 9751 ENSMUSG00000093757.1 ENSMUSG00000093757 ENSMUST00000176631 Mir5623 miRNA Interval_11321 chr1 180945135 180946111 + 0 NA promoter-TSS (ENSMUSG00000026519.16) protein_coding-promoter-TSS (ENSMUSG00000026519.16) 3165 ENSMUSG00000026519.16 ENSMUSG00000026519 ENSMUST00000161942 Tmem63a protein_coding Interval_132430 chr5 144879081 144879798 + 0 NA exon (ENSMUSG00000038780.14, exon 18 of 18) protein_coding-exon (ENSMUSG00000038780.14, exon 18 of 18) 17377 ENSMUSG00000098822.1 ENSMUSG00000098822 ENSMUST00000183852 Mir7039 miRNA Interval_73579 chr17 40719634 40719948 + 0 NA Intergenic Intergenic -7329 ENSMUSG00000073396.5 ENSMUSG00000073396 ENSMUST00000161110 Esp1 protein_coding Interval_174653 chrX 162447703 162448874 + 0 NA intron (ENSMUSG00000040855.15, intron 12 of 15) protein_coding-intron (ENSMUSG00000040855.15, intron 14 of 17) 96692 ENSMUSG00000082625.1 ENSMUSG00000082625 ENSMUST00000119454 Gm15204 processed_pseudogene Interval_54153 chr14 65768222 65768882 + 0 NA Intergenic Intergenic -37385 ENSMUSG00000022033.9 ENSMUSG00000022033 ENSMUST00000139644 Pbk protein_coding Interval_146488 chr7 46313554 46313766 + 0 NA Intergenic Intergenic 35713 ENSMUSG00000109962.1 ENSMUSG00000109962 ENSMUST00000210215 1700025L06Rik lincRNA Interval_7528 chr1 132002863 132003334 + 0 NA intron (ENSMUSG00000100037.1, intron 2 of 2) processed_transcript-intron (ENSMUSG00000100037.1, intron 2 of 2) -14710 ENSMUSG00000026436.15 ENSMUSG00000026436 ENSMUST00000131159 Elk4 protein_coding Interval_158524 chr8 84236532 84238108 + 0 NA promoter-TSS (ENSMUSG00000035671.6) protein_coding-promoter-TSS (ENSMUSG00000035671.6) -265 ENSMUSG00000035671.6 ENSMUSG00000035671 ENSMUST00000039480 Zswim4 protein_coding Interval_29541 chr11 84786568 84786766 + 0 NA Intergenic Intergenic -8838 ENSMUSG00000087407.1 ENSMUSG00000087407 ENSMUST00000155046 Gm11431 lincRNA Interval_46348 chr13 64128935 64129854 + 0 NA promoter-TSS (ENSMUSG00000033114.11) protein_coding-promoter-TSS (ENSMUSG00000033114.11) -58 ENSMUSG00000033114.11 ENSMUSG00000033114 ENSMUST00000222168 Slc35d2 protein_coding Interval_24899 chr11 40991470 40992651 + 0 NA Intergenic Intergenic 43063 ENSMUSG00000065916.1 ENSMUSG00000065916 ENSMUST00000083982 Gm24446 snRNA Interval_171473 chr9 118606395 118608912 + 0 NA intron (ENSMUSG00000039115.13, intron 1 of 27) protein_coding-intron (ENSMUSG00000039115.13, intron 1 of 27) -17458 ENSMUSG00000110676.1 ENSMUSG00000110676 ENSMUST00000212679 Gm45897 lincRNA Interval_134095 chr6 19855234 19855861 + 0 NA Intergenic Intergenic 67494 ENSMUSG00000107067.1 ENSMUSG00000107067 ENSMUST00000201774 Gm42581 processed_pseudogene Interval_102675 chr3 29611118 29611422 + 0 NA intron (ENSMUSG00000063600.14, intron 2 of 4) protein_coding-intron (ENSMUSG00000063600.14, intron 6 of 12) -25474 ENSMUSG00000098315.1 ENSMUSG00000098315 ENSMUST00000184317 Mir21b miRNA Interval_45161 chr13 52852202 52853164 + 0 NA intron (ENSMUSG00000021460.17, intron 5 of 9) protein_coding-intron (ENSMUSG00000021460.17, intron 6 of 9) 60263 ENSMUSG00000021460.17 ENSMUSG00000021460 ENSMUST00000151469 Auh protein_coding Interval_138686 chr6 91164998 91165827 + 0 NA promoter-TSS (ENSMUSG00000034245.10) protein_coding-promoter-TSS (ENSMUSG00000034245.10) -239 ENSMUSG00000034245.10 ENSMUSG00000034245 ENSMUST00000134154 Hdac11 protein_coding Interval_46390 chr13 64438965 64439576 + 0 NA TTS (ENSMUSG00000021483.8) protein_coding-TTS (ENSMUSG00000021483.8) 2623 ENSMUSG00000021483.8 ENSMUSG00000021483 ENSMUST00000223279 Cdk20 protein_coding Interval_112295 chr4 40174853 40176607 + 0 NA exon (ENSMUSG00000028405.9, exon 5 of 21) protein_coding-exon (ENSMUSG00000028405.9, exon 5 of 21) 12011 ENSMUSG00000028405.9 ENSMUSG00000028405 ENSMUST00000135787 Aco1 protein_coding Interval_134783 chr6 31516859 31517118 + 0 NA TTS (ENSMUSG00000025609.15) protein_coding-TTS (ENSMUSG00000025609.15) 7323 ENSMUSG00000025608.9 ENSMUSG00000025608 ENSMUST00000136877 Podxl protein_coding Interval_128703 chr5 114813114 114814412 + 0 NA intron (ENSMUSG00000072694.8, intron 1 of 1) protein_coding-intron (ENSMUSG00000072694.8, intron 1 of 1) 9705 ENSMUSG00000072694.8 ENSMUSG00000072694 ENSMUST00000100850 1500011B03Rik protein_coding Interval_65824 chr16 29550169 29550406 + 0 NA Intergenic Intergenic -5489 ENSMUSG00000038094.15 ENSMUSG00000038094 ENSMUST00000182694 Atp13a4 protein_coding Interval_141003 chr6 124279854 124280734 + 0 NA intron (ENSMUSG00000107773.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000107773.1, intron 1 of 1) 809 ENSMUSG00000107773.1 ENSMUSG00000107773 ENSMUST00000205010 Gm43971 lincRNA Interval_29609 chr11 85352421 85353638 + 0 NA promoter-TSS (ENSMUSG00000059439.15) protein_coding-promoter-TSS (ENSMUSG00000059439.15) 40865 ENSMUSG00000020525.17 ENSMUSG00000020525 ENSMUST00000127717 Ppm1d protein_coding Interval_107277 chr3 105224703 105225585 + 0 NA Intergenic Intergenic 158300 ENSMUSG00000051788.4 ENSMUSG00000051788 ENSMUST00000070584 4930564D02Rik protein_coding Interval_25424 chr11 48117905 48118099 + 0 NA Intergenic Intergenic 172311 ENSMUSG00000081952.1 ENSMUSG00000081952 ENSMUST00000120545 Gm12178 processed_pseudogene Interval_51847 chr14 32835350 32836501 + 0 NA exon (ENSMUSG00000078127.3, exon 2 of 2) protein_coding-exon (ENSMUSG00000078127.3, exon 2 of 2) 1604 ENSMUSG00000078127.3 ENSMUSG00000078127 ENSMUST00000227787 Fam170b protein_coding Interval_149969 chr7 103915574 103915742 + 0 NA Intergenic Intergenic 12023 ENSMUSG00000110259.2 ENSMUSG00000110259 ENSMUST00000209528 Olfr65 protein_coding Interval_147993 chr7 76629291 76630143 + 0 NA intron (ENSMUSG00000025754.11, intron 18 of 22) protein_coding-intron (ENSMUSG00000025754.11, intron 12 of 12) 18652 ENSMUSG00000108514.1 ENSMUSG00000108514 ENSMUST00000206600 2310001K20Rik TEC Interval_150691 chr7 113377422 113378818 + 0 NA Intergenic Intergenic 10450 ENSMUSG00000059077.6 ENSMUSG00000059077 ENSMUST00000079793 Pth protein_coding Interval_59241 chr15 49474098 49474478 + 0 NA Intergenic Intergenic -63907 ENSMUSG00000065760.1 ENSMUSG00000065760 ENSMUST00000083826 Gm23848 snRNA Interval_32602 chr11 109067995 109069472 + 0 NA Intergenic Intergenic -1643 ENSMUSG00000064691.1 ENSMUSG00000064691 ENSMUST00000082757 Gm24149 snRNA Interval_122526 chr5 23603325 23603549 + 0 NA intron (ENSMUSG00000062604.11, intron 2 of 5) protein_coding-intron (ENSMUSG00000062604.11, intron 1 of 14) -61319 ENSMUSG00000062604.11 ENSMUSG00000062604 ENSMUST00000196592 Srpk2 protein_coding Interval_14815 chr10 40237249 40238195 + 0 NA intron (ENSMUSG00000038510.12, intron 2 of 7) protein_coding-intron (ENSMUSG00000038510.12, intron 4 of 9) 9314 ENSMUSG00000038510.12 ENSMUSG00000038510 ENSMUST00000183114 Rpf2 protein_coding Interval_64368 chr16 10879520 10879917 + 0 NA intron (ENSMUSG00000117309.1, intron 28 of 45) protein_coding-intron (ENSMUSG00000037991.9, intron 1 of 5) 44650 ENSMUSG00000037991.9 ENSMUSG00000037991 ENSMUST00000181721 Rmi2 protein_coding Interval_119689 chr4 139232486 139233386 + 0 NA promoter-TSS (ENSMUSG00000028745.18) protein_coding-promoter-TSS (ENSMUSG00000028745.18) 38825 ENSMUSG00000028745.18 ENSMUSG00000028745 ENSMUST00000132385 Capzb protein_coding Interval_135000 chr6 34447022 34447246 + 0 NA Intergenic Intergenic -4020 ENSMUSG00000084965.1 ENSMUSG00000084965 ENSMUST00000141091 Gm13857 transcribed_processed_pseudogene Interval_86881 chr19 44589924 44590224 + 0 NA Intergenic Intergenic -24688 ENSMUSG00000117911.1 ENSMUSG00000117911 ENSMUST00000236677 Gm35460 lincRNA Interval_162092 chr8 125034554 125035010 + 0 NA TTS (ENSMUSG00000056820.7) protein_coding-TTS (ENSMUSG00000056820.7) -15611 ENSMUSG00000110683.1 ENSMUSG00000110683 ENSMUST00000212423 Gm45874 processed_pseudogene Interval_143161 chr7 4013635 4013841 + 0 NA intron (ENSMUSG00000055541.17, intron 2 of 6) protein_coding-intron (ENSMUSG00000055541.17, intron 2 of 6) 13310 ENSMUSG00000055541.17 ENSMUSG00000055541 ENSMUST00000119711 Lair1 protein_coding Interval_65811 chr16 29165634 29165853 + 0 NA Intergenic Intergenic -44365 ENSMUSG00000022525.13 ENSMUSG00000022525 ENSMUST00000161294 Plaat1 protein_coding Interval_132480 chr5 145208256 145208669 + 0 NA promoter-TSS (ENSMUSG00000055991.15) protein_coding-promoter-TSS (ENSMUSG00000055991.15) 858 ENSMUSG00000055991.15 ENSMUSG00000055991 ENSMUST00000160162 Zkscan5 protein_coding Interval_22937 chr11 17640161 17640504 + 0 NA Intergenic Intergenic -1149 ENSMUSG00000082411.1 ENSMUSG00000082411 ENSMUST00000119079 Gm12016 processed_pseudogene Interval_31411 chr11 100533766 100535458 + 0 NA Intergenic Intergenic -11014 ENSMUSG00000020917.17 ENSMUSG00000020917 ENSMUST00000107385 Acly protein_coding Interval_156392 chr8 47896414 47896790 + 0 NA intron (ENSMUSG00000031563.8, intron 4 of 22) protein_coding-intron (ENSMUSG00000031563.8, intron 4 of 22) -2580 ENSMUSG00000064519.1 ENSMUSG00000064519 ENSMUST00000082585 n-R5s97 rRNA Interval_155083 chr8 26264953 26265962 + 0 NA Intergenic Intergenic -1520 ENSMUSG00000110417.1 ENSMUSG00000110417 ENSMUST00000210102 Gm31727 lincRNA Interval_160625 chr8 111144944 111146125 + 0 NA promoter-TSS (ENSMUSG00000084808.7) processed_transcript-promoter-TSS (ENSMUSG00000084808.7) -54 ENSMUSG00000084808.7 ENSMUSG00000084808 ENSMUST00000143719 9430091E24Rik processed_transcript Interval_25128 chr11 44390208 44390454 + 0 NA Intergenic Intergenic -3057 ENSMUSG00000082790.1 ENSMUSG00000082790 ENSMUST00000121267 Gm12155 processed_pseudogene Interval_155178 chr8 27222734 27224386 + 0 NA intron (ENSMUSG00000039720.7, intron 1 of 1) protein_coding-intron (ENSMUSG00000039720.7, intron 1 of 1) 268 ENSMUSG00000039720.7 ENSMUSG00000039720 ENSMUST00000209299 Got1l1 protein_coding Interval_55758 chr14 99633576 99634474 + 0 NA Intergenic Intergenic -3359 ENSMUSG00000115366.1 ENSMUSG00000115366 ENSMUST00000228944 Gm9298 processed_pseudogene Interval_109850 chr3 148952475 148952784 + 0 NA intron (ENSMUSG00000028184.12, intron 2 of 19) protein_coding-intron (ENSMUSG00000028184.12, intron 2 of 2) -36523 ENSMUSG00000104786.1 ENSMUSG00000104786 ENSMUST00000196445 Gm43573 antisense Interval_155450 chr8 33660243 33660826 + 0 NA intron (ENSMUSG00000031584.16, intron 1 of 12) protein_coding-intron (ENSMUSG00000031584.16, intron 1 of 12) 8011 ENSMUSG00000031584.16 ENSMUSG00000031584 ENSMUST00000149528 Gsr protein_coding Interval_36198 chr12 38812590 38813298 + 0 NA intron (ENSMUSG00000004151.17, intron 3 of 10) protein_coding-intron (ENSMUSG00000004151.17, intron 5 of 12) -6599 ENSMUSG00000004151.17 ENSMUSG00000004151 ENSMUST00000161591 Etv1 protein_coding Interval_152986 chr7 140443480 140444834 + 0 NA Intergenic Intergenic -19235 ENSMUSG00000056883.5 ENSMUSG00000056883 ENSMUST00000071755 Olfr533 protein_coding Interval_44546 chr13 45953472 45953922 + 0 NA intron (ENSMUSG00000046876.16, intron 1 of 2) protein_coding-intron (ENSMUSG00000046876.16, intron 2 of 7) 11279 ENSMUSG00000046876.16 ENSMUSG00000046876 ENSMUST00000222610 Atxn1 protein_coding Interval_72279 chr17 28944295 28945442 + 0 NA Intergenic Intergenic 2327 ENSMUSG00000117116.1 ENSMUSG00000117116 ENSMUST00000233293 Gm49868 processed_pseudogene Interval_72086 chr17 27948982 27949565 + 0 NA intron (ENSMUSG00000024219.16, intron 1 of 23) protein_coding-intron (ENSMUSG00000024219.16, intron 1 of 24) 16043 ENSMUSG00000085846.1 ENSMUSG00000085846 ENSMUST00000145924 Gm15597 antisense Interval_65595 chr16 23913544 23913871 + 0 NA Intergenic Intergenic 18687 ENSMUSG00000047531.9 ENSMUSG00000047531 ENSMUST00000231038 Rtp2 protein_coding Interval_51260 chr14 25590276 25591934 + 0 NA intron (ENSMUSG00000007817.15, intron 6 of 23) protein_coding-intron (ENSMUSG00000007817.15, intron 6 of 23) 56666 ENSMUSG00000093081.1 ENSMUSG00000093081 ENSMUST00000175340 Mir3075 miRNA Interval_153142 chr7 141624304 141624554 + 0 NA intron (ENSMUSG00000002957.11, intron 15 of 21) protein_coding-intron (ENSMUSG00000002957.11, intron 15 of 21) 3728 ENSMUSG00000098759.1 ENSMUSG00000098759 ENSMUST00000184158 Mir7063 miRNA Interval_122095 chr5 16938768 16939164 + 0 NA Intergenic Intergenic -42070 ENSMUSG00000105706.1 ENSMUSG00000105706 ENSMUST00000197388 Gm42855 processed_pseudogene Interval_47224 chr13 78239915 78240153 + 0 NA intron (ENSMUSG00000087143.9, intron 1 of 1) antisense-intron (ENSMUSG00000087143.9, intron 1 of 1) 33918 ENSMUSG00000114592.1 ENSMUSG00000114592 ENSMUST00000224369 Gm5042 processed_pseudogene Interval_77414 chr17 88549176 88550278 + 0 NA intron (ENSMUSG00000034709.8, intron 5 of 21) protein_coding-intron (ENSMUSG00000034709.8, intron 5 of 21) -12390 ENSMUSG00000034709.8 ENSMUSG00000034709 ENSMUST00000185400 Ppp1r21 protein_coding Interval_48239 chr13 97370885 97371196 + 0 NA Intergenic Intergenic -5194 ENSMUSG00000114425.1 ENSMUSG00000114425 ENSMUST00000223964 Gm33447 lincRNA Interval_60974 chr15 78422257 78422849 + 0 NA intron (ENSMUSG00000115854.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000115854.1, intron 1 of 1) 1640 ENSMUSG00000115854.1 ENSMUSG00000115854 ENSMUST00000229780 Gm36644 lincRNA Interval_1242 chr1 17982141 17983223 + 0 NA Intergenic Intergenic -11131 ENSMUSG00000099591.1 ENSMUSG00000099591 ENSMUST00000185706 Gm17969 processed_pseudogene Interval_151296 chr7 120764941 120765234 + 0 NA intron (ENSMUSG00000030889.14, intron 6 of 22) protein_coding-intron (ENSMUSG00000030889.14, intron 6 of 33) -17530 ENSMUSG00000030889.14 ENSMUSG00000030889 ENSMUST00000166083 Vwa3a protein_coding Interval_37298 chr12 64930571 64930798 + 0 NA Intergenic Intergenic 9900 ENSMUSG00000047227.5 ENSMUSG00000047227 ENSMUST00000220928 Gm527 protein_coding Interval_132197 chr5 143287654 143288467 + 0 NA exon (ENSMUSG00000093910.2, exon 3 of 3) protein_coding-exon (ENSMUSG00000093910.2, exon 3 of 3) 5563 ENSMUSG00000093910.2 ENSMUSG00000093910 ENSMUST00000180336 Zfp853 protein_coding Interval_121039 chr4 152367669 152368169 + 0 NA exon (ENSMUSG00000005045.16, exon 15 of 41) protein_coding-exon (ENSMUSG00000005045.16, exon 15 of 41) -14278 ENSMUSG00000085179.1 ENSMUSG00000085179 ENSMUST00000145163 Gm13645 processed_transcript Interval_76254 chr17 78521535 78521990 + 0 NA intron (ENSMUSG00000024076.10, intron 1 of 12) protein_coding-intron (ENSMUSG00000024076.10, intron 1 of 13) 12251 ENSMUSG00000087959.1 ENSMUSG00000087959 ENSMUST00000157334 Gm22562 rRNA Interval_76180 chr17 76218401 76218801 + 0 NA Intergenic Intergenic 66260 ENSMUSG00000066958.1 ENSMUSG00000066958 ENSMUST00000086601 Gm16391 processed_pseudogene Interval_95844 chr2 117206361 117206996 + 0 NA Intergenic Intergenic 21551 ENSMUSG00000076376.1 ENSMUSG00000076376 ENSMUST00000102421 Mir674 miRNA Interval_161493 chr8 120705253 120705690 + 0 NA intron (ENSMUSG00000092329.1, intron 1 of 15) protein_coding-intron (ENSMUSG00000092329.1, intron 1 of 15) 12283 ENSMUSG00000088416.1 ENSMUSG00000088416 ENSMUST00000157791 Gm24239 misc_RNA Interval_64794 chr16 15852935 15853468 + 0 NA intron (ENSMUSG00000022671.13, intron 1 of 1) protein_coding-intron (ENSMUSG00000022671.13, intron 2 of 2) 10109 ENSMUSG00000022671.13 ENSMUSG00000022671 ENSMUST00000117136 Mzt2 protein_coding Interval_25620 chr11 50245154 50245522 + 0 NA intron (ENSMUSG00000097887.2, intron 1 of 2) antisense-intron (ENSMUSG00000097887.2, intron 1 of 2) -6822 ENSMUSG00000020377.15 ENSMUSG00000020377 ENSMUST00000221081 Ltc4s protein_coding Interval_132328 chr5 144209879 144210273 + 0 NA exon (ENSMUSG00000066621.12, exon 10 of 25) protein_coding-exon (ENSMUSG00000066621.12, exon 10 of 25) 13447 ENSMUSG00000066621.12 ENSMUSG00000066621 ENSMUST00000196360 Tecpr1 protein_coding Interval_165867 chr9 53954855 53955043 + 0 NA intron (ENSMUSG00000041986.16, intron 1 of 8) protein_coding-intron (ENSMUSG00000041986.16, intron 1 of 10) -27923 ENSMUSG00000041986.16 ENSMUSG00000041986 ENSMUST00000213111 Elmod1 protein_coding Interval_160428 chr8 109436499 109437528 + 0 NA Intergenic Intergenic -11269 ENSMUSG00000092821.1 ENSMUSG00000092821 ENSMUST00000175080 Gm23163 miRNA Interval_167810 chr9 72824202 72824643 + 0 NA intron (ENSMUSG00000036030.9, intron 2 of 19) protein_coding-intron (ENSMUSG00000036030.9, intron 2 of 19) 3141 ENSMUSG00000098471.1 ENSMUSG00000098471 ENSMUST00000183677 Gm27203 processed_pseudogene Interval_70424 chr17 10078613 10080550 + 0 NA Intergenic Intergenic 131744 ENSMUSG00000117206.1 ENSMUSG00000117206 ENSMUST00000233132 Gm49809 processed_pseudogene Interval_19239 chr10 95689160 95690290 + 0 NA Intergenic Intergenic 13737 ENSMUSG00000112025.1 ENSMUSG00000112025 ENSMUST00000218734 Gm47669 processed_pseudogene Interval_72362 chr17 29425568 29425779 + 0 NA Intergenic Intergenic 9084 ENSMUSG00000117575.1 ENSMUSG00000117575 ENSMUST00000234181 Gm36486 processed_transcript Interval_86853 chr19 44373092 44373427 + 0 NA Intergenic Intergenic 33431 ENSMUSG00000037071.3 ENSMUSG00000037071 ENSMUST00000235741 Scd1 protein_coding Interval_9199 chr1 155029135 155029693 + 0 NA intron (ENSMUSG00000101880.1, intron 1 of 3) lincRNA-intron (ENSMUSG00000101880.1, intron 1 of 3) -2325 ENSMUSG00000101433.1 ENSMUSG00000101433 ENSMUST00000191584 Gm29441 processed_pseudogene Interval_126206 chr5 82323393 82323697 + 0 NA Intergenic Intergenic -13306 ENSMUSG00000106926.1 ENSMUSG00000106926 ENSMUST00000200912 Rpl7-ps7 processed_pseudogene Interval_71038 chr17 17353525 17353812 + 0 NA intron (ENSMUSG00000116590.1, intron 6 of 6) lincRNA-intron (ENSMUSG00000116590.1, intron 6 of 6) -7528 ENSMUSG00000043801.7 ENSMUSG00000043801 ENSMUST00000052440 Oaz1-ps processed_pseudogene Interval_5492 chr1 89207152 89207549 + 0 NA Intergenic Intergenic 49631 ENSMUSG00000102083.1 ENSMUSG00000102083 ENSMUST00000191231 Gm5259 processed_pseudogene Interval_164785 chr9 41860529 41862352 + 0 NA intron (ENSMUSG00000111511.1, intron 4 of 5) processed_transcript-intron (ENSMUSG00000111511.1, intron 3 of 3) -14879 ENSMUSG00000111156.1 ENSMUSG00000111156 ENSMUST00000213590 Gm48814 bidirectional_promoter_lncRNA Interval_124168 chr5 38824016 38825571 + 0 NA intron (ENSMUSG00000039315.15, intron 2 of 18) protein_coding-intron (ENSMUSG00000039315.15, intron 2 of 18) 52019 ENSMUSG00000039315.15 ENSMUSG00000039315 ENSMUST00000171633 Clnk protein_coding Interval_154240 chr8 13676840 13678224 + 0 NA promoter-TSS (ENSMUSG00000031453.16) protein_coding-promoter-TSS (ENSMUSG00000031453.16) -81 ENSMUSG00000031453.16 ENSMUSG00000031453 ENSMUST00000132439 Rasa3 protein_coding Interval_86412 chr19 40318469 40319326 + 0 NA intron (ENSMUSG00000025006.18, intron 22 of 29) protein_coding-intron (ENSMUSG00000025006.18, intron 15 of 21) 20926 ENSMUSG00000114796.1 ENSMUSG00000114796 ENSMUST00000225358 A930028N01Rik antisense Interval_161858 chr8 123245165 123246020 + 0 NA TTS (ENSMUSG00000001062.18) protein_coding-TTS (ENSMUSG00000001062.18) 8517 ENSMUSG00000001062.18 ENSMUSG00000001062 ENSMUST00000129591 Vps9d1 protein_coding Interval_153926 chr8 11248584 11249021 + 0 NA intron (ENSMUSG00000031502.11, intron 2 of 52) protein_coding-intron (ENSMUSG00000031502.11, intron 2 of 51) 42465 ENSMUSG00000109358.1 ENSMUSG00000109358 ENSMUST00000209007 Gm44716 TEC Interval_73976 chr17 45791311 45791629 + 0 NA Intergenic Intergenic 24275 ENSMUSG00000097727.8 ENSMUSG00000097727 ENSMUST00000233473 F630040K05Rik lincRNA Interval_18104 chr10 82629144 82630544 + 0 NA promoter-TSS (ENSMUSG00000034674.18) protein_coding-promoter-TSS (ENSMUSG00000034674.18) -6616 ENSMUSG00000063320.11 ENSMUSG00000063320 ENSMUST00000183416 1190007I07Rik protein_coding Interval_43043 chr13 23453136 23454133 + 0 NA Intergenic Intergenic -7699 ENSMUSG00000113440.1 ENSMUSG00000113440 ENSMUST00000221461 Gm46404 lincRNA Interval_90909 chr2 33430792 33431757 + 0 NA promoter-TSS (ENSMUSG00000068966.10) protein_coding-promoter-TSS (ENSMUSG00000068966.10) 43 ENSMUSG00000068966.10 ENSMUSG00000068966 ENSMUST00000134589 Zbtb34 protein_coding Interval_2761 chr1 44331201 44332918 + 0 NA Intergenic Intergenic -1023 ENSMUSG00000100966.1 ENSMUSG00000100966 ENSMUST00000191483 Gm5700 processed_pseudogene Interval_149020 chr7 92102914 92103509 + 0 NA intron (ENSMUSG00000109382.1, intron 3 of 6) protein_coding-intron (ENSMUSG00000052572.19, intron 12 of 22) 16300 ENSMUSG00000109382.1 ENSMUSG00000109382 ENSMUST00000207593 4930567K12Rik antisense Interval_42534 chr13 14649249 14649516 + 0 NA intron (ENSMUSG00000015671.11, intron 6 of 6) protein_coding-intron (ENSMUSG00000015671.11, intron 6 of 6) 19105 ENSMUSG00000039182.6 ENSMUSG00000039182 ENSMUST00000222052 AW209491 protein_coding Interval_76722 chr17 83693796 83694553 + 0 NA Intergenic Intergenic -34990 ENSMUSG00000055817.18 ENSMUSG00000055817 ENSMUST00000175920 Mta3 protein_coding Interval_169188 chr9 95405414 95407996 + 0 NA promoter-TSS (ENSMUSG00000033350.7) protein_coding-promoter-TSS (ENSMUSG00000033350.7) 17 ENSMUSG00000033350.7 ENSMUSG00000033350 ENSMUST00000036267 Chst2 protein_coding Interval_137486 chr6 72720859 72721372 + 0 NA intron (ENSMUSG00000055799.13, intron 2 of 5) protein_coding-intron (ENSMUSG00000055799.13, intron 3 of 11) 21901 ENSMUSG00000079524.2 ENSMUSG00000079524 ENSMUST00000114051 Gm15402 antisense Interval_1254 chr1 18287371 18287831 + 0 NA Intergenic Intergenic -22521 ENSMUSG00000067773.6 ENSMUSG00000067773 ENSMUST00000097817 Defb41 protein_coding Interval_52001 chr14 34533406 34534787 + 0 NA intron (ENSMUSG00000021798.14, intron 13 of 13) protein_coding-intron (ENSMUSG00000021798.14, intron 13 of 13) -11295 ENSMUSG00000021797.2 ENSMUSG00000021797 ENSMUST00000022325 9230112D13Rik protein_coding Interval_20735 chr10 120634123 120634334 + 0 NA intron (ENSMUSG00000112716.1, intron 2 of 2) lincRNA-intron (ENSMUSG00000112716.1, intron 1 of 1) 28691 ENSMUSG00000088924.1 ENSMUSG00000088924 ENSMUST00000158299 Gm24298 snoRNA Interval_138041 chr6 84543426 84544172 + 0 NA Intergenic Intergenic 7923 ENSMUSG00000107926.1 ENSMUSG00000107926 ENSMUST00000204799 4930504D19Rik lincRNA Interval_69297 chr16 91997607 91999334 + 0 NA Intergenic Intergenic 11941 ENSMUSG00000116834.1 ENSMUSG00000116834 ENSMUST00000232327 Gm18020 processed_pseudogene Interval_11116 chr1 179475874 179477651 + 0 NA intron (ENSMUSG00000055067.15, intron 1 of 11) protein_coding-intron (ENSMUSG00000055067.15, intron 1 of 5) 41243 ENSMUSG00000055067.15 ENSMUSG00000055067 ENSMUST00000194237 Smyd3 protein_coding Interval_78046 chr18 7437693 7437962 + 0 NA intron (ENSMUSG00000057440.8, intron 15 of 15) protein_coding-intron (ENSMUSG00000057440.8, intron 11 of 16) -111160 ENSMUSG00000117556.1 ENSMUSG00000117556 ENSMUST00000234527 Gm18948 processed_pseudogene Interval_114745 chr4 84687661 84688091 + 0 NA Intergenic Intergenic -9987 ENSMUSG00000081775.1 ENSMUSG00000081775 ENSMUST00000119869 Gm12420 processed_pseudogene Interval_71879 chr17 26686459 26687255 + 0 NA intron (ENSMUSG00000015575.15, intron 2 of 3) protein_coding-intron (ENSMUSG00000015575.15, intron 2 of 3) 10700 ENSMUSG00000015575.15 ENSMUSG00000015575 ENSMUST00000167352 Atp6v0e protein_coding Interval_42637 chr13 17531430 17532357 + 0 NA intron (ENSMUSG00000055137.7, intron 8 of 13) protein_coding-intron (ENSMUSG00000055137.7, intron 8 of 13) 91103 ENSMUSG00000094665.1 ENSMUSG00000094665 ENSMUST00000179101 Gm24873 snRNA Interval_43213 chr13 25346455 25346672 + 0 NA Intergenic Intergenic -76593 ENSMUSG00000048978.14 ENSMUSG00000048978 ENSMUST00000126348 Nrsn1 protein_coding Interval_15231 chr10 43527277 43528666 + 0 NA intron (ENSMUSG00000019797.11, intron 3 of 3) protein_coding-intron (ENSMUSG00000019797.11, intron 3 of 3) 3865 ENSMUSG00000045886.7 ENSMUSG00000045886 ENSMUST00000216543 Gm9803 protein_coding Interval_63050 chr15 98830826 98831937 + 0 NA promoter-TSS (ENSMUSG00000067713.7) protein_coding-promoter-TSS (ENSMUSG00000067713.7) -410 ENSMUSG00000067713.7 ENSMUSG00000067713 ENSMUST00000229853 Prkag1 protein_coding Interval_72734 chr17 31818737 31821792 + 0 NA Intergenic Intergenic 30738 ENSMUSG00000117355.1 ENSMUSG00000117355 ENSMUST00000234824 Gm49999 lincRNA Interval_123016 chr5 28464361 28465431 + 0 NA intron (ENSMUSG00000002633.4, intron 1 of 2) protein_coding-intron (ENSMUSG00000002633.4, intron 1 of 2) -2088 ENSMUSG00000097726.7 ENSMUSG00000097726 ENSMUST00000181202 9530036O11Rik antisense Interval_17971 chr10 81141371 81142142 + 0 NA intron (ENSMUSG00000035011.15, intron 1 of 2) protein_coding-intron (ENSMUSG00000035011.15, intron 1 of 2) 5190 ENSMUSG00000035011.15 ENSMUSG00000035011 ENSMUST00000117956 Zbtb7a protein_coding Interval_19064 chr10 94152631 94152883 + 0 NA intron (ENSMUSG00000005897.14, intron 2 of 14) protein_coding-intron (ENSMUSG00000005897.14, intron 2 of 14) 4734 ENSMUSG00000005897.14 ENSMUSG00000005897 ENSMUST00000099343 Nr2c1 protein_coding Interval_164914 chr9 43055162 43055404 + 0 NA intron (ENSMUSG00000059495.14, intron 1 of 4) protein_coding-intron (ENSMUSG00000059495.14, intron 1 of 41) -28623 ENSMUSG00000059495.14 ENSMUSG00000059495 ENSMUST00000214175 Arhgef12 protein_coding Interval_144434 chr7 25132523 25133757 + 0 NA promoter-TSS (ENSMUSG00000008496.19) protein_coding-promoter-TSS (ENSMUSG00000008496.19) -628 ENSMUSG00000008496.19 ENSMUSG00000008496 ENSMUST00000175754 Pou2f2 protein_coding Interval_141770 chr6 134353845 134354213 + 0 NA intron (ENSMUSG00000107666.1, intron 3 of 8) antisense-intron (ENSMUSG00000107666.1, intron 3 of 8) -44611 ENSMUSG00000030200.13 ENSMUSG00000030200 ENSMUST00000142612 Bcl2l14 protein_coding Interval_163497 chr9 21729223 21729697 + 0 NA intron (ENSMUSG00000032193.9, intron 1 of 9) protein_coding-intron (ENSMUSG00000032193.9, intron 1 of 17) -6010 ENSMUSG00000097155.1 ENSMUSG00000097155 ENSMUST00000181400 Gm26511 lincRNA Interval_92234 chr2 57237577 57239263 + 0 NA promoter-TSS (ENSMUSG00000026827.12) protein_coding-promoter-TSS (ENSMUSG00000026827.12) 88 ENSMUSG00000054181.11 ENSMUSG00000054181 ENSMUST00000146529 A930012O16Rik processed_transcript Interval_129567 chr5 120975655 120976620 + 0 NA intron (ENSMUSG00000029608.10, intron 4 of 21) protein_coding-intron (ENSMUSG00000029608.10, intron 4 of 21) -3790 ENSMUSG00000106841.1 ENSMUSG00000106841 ENSMUST00000201506 Gm42656 TEC Interval_101661 chr3 8677195 8677743 + 0 NA Intergenic Intergenic 2008 ENSMUSG00000088094.1 ENSMUSG00000088094 ENSMUST00000157469 Gm23670 snoRNA Interval_147568 chr7 68315328 68315582 + 0 NA TTS (ENSMUSG00000109453.1) TEC-TTS (ENSMUSG00000109453.1) 1577 ENSMUSG00000109453.1 ENSMUSG00000109453 ENSMUST00000207912 4930405G09Rik TEC Interval_45881 chr13 58753953 58754182 + 0 NA exon (ENSMUSG00000114384.1, exon 6 of 6) lincRNA-exon (ENSMUSG00000114384.1, exon 6 of 6) -2484 ENSMUSG00000114325.1 ENSMUSG00000114325 ENSMUST00000225684 Rpl13-ps2 processed_pseudogene Interval_21044 chr10 125213693 125215136 + 0 NA Intergenic Intergenic -94498 ENSMUSG00000109803.1 ENSMUSG00000109803 ENSMUST00000209665 Gm45604 antisense Interval_130215 chr5 125003158 125004110 + 0 NA exon (ENSMUSG00000037962.7, exon 2 of 4) protein_coding-exon (ENSMUSG00000037962.7, exon 2 of 4) 159 ENSMUSG00000037962.7 ENSMUSG00000037962 ENSMUST00000145946 Rflna protein_coding Interval_137841 chr6 82875541 82876151 + 0 NA Intergenic Intergenic 5986 ENSMUSG00000100291.6 ENSMUSG00000100291 ENSMUST00000191170 2310069B03Rik lincRNA Interval_159309 chr8 93176488 93177104 + 0 NA intron (ENSMUSG00000056973.6, intron 9 of 13) protein_coding-intron (ENSMUSG00000056973.6, intron 9 of 13) -1507 ENSMUSG00000056973.6 ENSMUSG00000056973 ENSMUST00000129987 Ces1d protein_coding Interval_15275 chr10 44024483 44025440 + 0 NA intron (ENSMUSG00000019866.15, intron 2 of 21) protein_coding-intron (ENSMUSG00000019866.15, intron 2 of 21) 20807 ENSMUSG00000075162.3 ENSMUSG00000075162 ENSMUST00000099864 Gm10812 pseudogene Interval_35466 chr12 22782858 22783504 + 0 NA Intergenic Intergenic -37770 ENSMUSG00000113574.1 ENSMUSG00000113574 ENSMUST00000223354 Gm48037 processed_pseudogene Interval_151623 chr7 125437530 125438166 + 0 NA Intergenic Intergenic -6836 ENSMUSG00000030752.8 ENSMUSG00000030752 ENSMUST00000135129 Kdm8 protein_coding Interval_105254 chr3 84228271 84229341 + 0 NA intron (ENSMUSG00000027993.16, intron 1 of 4) protein_coding-intron (ENSMUSG00000027993.16, intron 1 of 11) 54702 ENSMUSG00000104043.1 ENSMUSG00000104043 ENSMUST00000193882 Gm6525 protein_coding Interval_25723 chr11 51129919 51130480 + 0 NA Intergenic Intergenic -12333 ENSMUSG00000083312.1 ENSMUSG00000083312 ENSMUST00000120114 Olfr1374-ps1 unprocessed_pseudogene Interval_81291 chr18 57490252 57490550 + 0 NA intron (ENSMUSG00000086607.7, intron 2 of 3) antisense-intron (ENSMUSG00000086607.7, intron 2 of 3) 17948 ENSMUSG00000069372.3 ENSMUSG00000069372 ENSMUST00000209786 Ctxn3 protein_coding Interval_59617 chr15 56336358 56337085 + 0 NA Intergenic Intergenic -78292 ENSMUSG00000115064.1 ENSMUSG00000115064 ENSMUST00000228801 Gm49213 processed_pseudogene Interval_72135 chr17 28225953 28226340 + 0 NA TTS (ENSMUSG00000002257.8) protein_coding-TTS (ENSMUSG00000002257.8) -1979 ENSMUSG00000117028.1 ENSMUSG00000117028 ENSMUST00000232711 Gm49874 antisense Interval_126406 chr5 88137639 88137848 + 0 NA Intergenic Intergenic -6961 ENSMUSG00000105807.1 ENSMUSG00000105807 ENSMUST00000197229 Gm42622 processed_pseudogene Interval_49612 chr13 113553665 113554564 + 0 NA intron (ENSMUSG00000114715.1, intron 1 of 5) lincRNA-intron (ENSMUSG00000114715.1, intron 1 of 5) 13653 ENSMUSG00000114715.1 ENSMUSG00000114715 ENSMUST00000225395 Gm34471 lincRNA Interval_143377 chr7 6222702 6222940 + 0 NA intron (ENSMUSG00000058028.14, intron 1 of 2) protein_coding-intron (ENSMUSG00000058028.14, intron 1 of 5) -7358 ENSMUSG00000058028.14 ENSMUSG00000058028 ENSMUST00000165445 Zscan5b protein_coding Interval_14390 chr10 32535839 32536089 + 0 NA intron (ENSMUSG00000069670.8, intron 1 of 3) protein_coding-intron (ENSMUSG00000069670.8, intron 1 of 6) -48965 ENSMUSG00000112075.1 ENSMUSG00000112075 ENSMUST00000219777 Gm47700 TEC Interval_122327 chr5 21372111 21373305 + 0 NA promoter-TSS (ENSMUSG00000039899.5) protein_coding-promoter-TSS (ENSMUSG00000039899.5) 66 ENSMUSG00000039899.5 ENSMUSG00000039899 ENSMUST00000035799 Fgl2 protein_coding Interval_166744 chr9 62373281 62375445 + 0 NA TTS (ENSMUSG00000032249.14) protein_coding-TTS (ENSMUSG00000032249.14) 31899 ENSMUSG00000032249.14 ENSMUSG00000032249 ENSMUST00000145679 Anp32a protein_coding Interval_63849 chr16 3974490 3977192 + 0 NA intron (ENSMUSG00000049871.14, intron 1 of 17) protein_coding-intron (ENSMUSG00000049871.14, intron 1 of 13) -10201 ENSMUSG00000049871.14 ENSMUSG00000049871 ENSMUST00000163478 Nlrc3 protein_coding Interval_101926 chr3 11651542 11651753 + 0 NA Intergenic Intergenic 7863 ENSMUSG00000098085.1 ENSMUSG00000098085 ENSMUST00000182028 Gm8919 processed_pseudogene Interval_111439 chr4 21674101 21674550 + 0 NA Intergenic Intergenic 3285 ENSMUSG00000082672.1 ENSMUSG00000082672 ENSMUST00000120002 Gm11876 processed_pseudogene Interval_37258 chr12 63335978 63336271 + 0 NA Intergenic Intergenic -19660 ENSMUSG00000114123.1 ENSMUSG00000114123 ENSMUST00000222999 Gm48416 processed_pseudogene Interval_164973 chr9 43530976 43531289 + 0 NA Intergenic Intergenic -15300 ENSMUSG00000111110.1 ENSMUSG00000111110 ENSMUST00000216439 Gm36855 lincRNA Interval_13126 chr10 11832490 11833337 + 0 NA intron (ENSMUSG00000111995.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000111995.1, intron 1 of 1) 5982 ENSMUSG00000112233.1 ENSMUSG00000112233 ENSMUST00000219464 Gm48698 processed_pseudogene Interval_65444 chr16 22376178 22376842 + 0 NA Intergenic Intergenic 25319 ENSMUSG00000013089.15 ENSMUSG00000013089 ENSMUST00000170393 Etv5 protein_coding Interval_8372 chr1 138385209 138386237 + 0 NA Intergenic Intergenic 8459 ENSMUSG00000101793.1 ENSMUSG00000101793 ENSMUST00000190286 Gm28500 processed_pseudogene Interval_27540 chr11 68549743 68550673 + 0 NA intron (ENSMUSG00000046207.14, intron 18 of 19) protein_coding-intron (ENSMUSG00000046207.14, intron 18 of 19) -5978 ENSMUSG00000048329.7 ENSMUSG00000048329 ENSMUST00000053211 Mfsd6l protein_coding Interval_174401 chrX 151238221 151238424 + 0 NA intron (ENSMUSG00000041245.13, intron 9 of 21) protein_coding-intron (ENSMUSG00000041245.13, intron 9 of 21) -22673 ENSMUSG00000083596.4 ENSMUSG00000083596 ENSMUST00000121545 Rpl21-ps15 processed_pseudogene Interval_93907 chr2 78914830 78915350 + 0 NA TTS (ENSMUSG00000027011.14) protein_coding-TTS (ENSMUSG00000027011.14) 45850 ENSMUSG00000027011.14 ENSMUSG00000027011 ENSMUST00000153266 Ube2e3 protein_coding Interval_40371 chr12 104452594 104453888 + 0 NA Intergenic Intergenic 20089 ENSMUSG00000021095.5 ENSMUSG00000021095 ENSMUST00000021513 Gsc protein_coding Interval_49410 chr13 111780118 111780505 + 0 NA intron (ENSMUSG00000021754.17, intron 1 of 19) protein_coding-intron (ENSMUSG00000021754.17, intron 1 of 19) -28938 ENSMUSG00000021754.17 ENSMUSG00000021754 ENSMUST00000145055 Map3k1 protein_coding Interval_79463 chr18 32099852 32100595 + 0 NA exon (ENSMUSG00000024384.4, exon 14 of 14) protein_coding-exon (ENSMUSG00000024384.4, exon 14 of 14) 12084 ENSMUSG00000117481.1 ENSMUSG00000117481 ENSMUST00000235012 Gm49966 processed_pseudogene Interval_132554 chr5 146286703 146288219 + 0 NA intron (ENSMUSG00000029635.15, intron 6 of 6) protein_coding-intron (ENSMUSG00000029635.15, intron 6 of 12) 1285 ENSMUSG00000029635.15 ENSMUSG00000029635 ENSMUST00000160924 Cdk8 protein_coding Interval_42721 chr13 18575025 18576730 + 0 NA Intergenic Intergenic 69472 ENSMUSG00000114118.1 ENSMUSG00000114118 ENSMUST00000221183 Gm48829 lincRNA Interval_152847 chr7 138799474 138799996 + 0 NA Intergenic Intergenic -21010 ENSMUSG00000110241.1 ENSMUSG00000110241 ENSMUST00000211620 Gm45506 processed_pseudogene Interval_133467 chr6 5403177 5403568 + 0 NA intron (ENSMUSG00000042607.15, intron 3 of 5) protein_coding-intron (ENSMUSG00000042607.15, intron 3 of 5) 12945 ENSMUSG00000042607.15 ENSMUSG00000042607 ENSMUST00000183358 Asb4 protein_coding Interval_73181 chr17 35319804 35321806 + 0 NA intron (ENSMUSG00000079507.10, intron 1 of 3) protein_coding-intron (ENSMUSG00000079507.10, intron 1 of 7) 400 ENSMUSG00000079507.10 ENSMUSG00000079507 ENSMUST00000073208 H2-Q1 protein_coding Interval_84086 chr19 7121666 7121962 + 0 NA intron (ENSMUSG00000036278.7, intron 3 of 10) protein_coding-intron (ENSMUSG00000036278.7, intron 3 of 10) -16085 ENSMUSG00000047787.8 ENSMUSG00000047787 ENSMUST00000113383 Flrt1 protein_coding Interval_79878 chr18 35696276 35697323 + 0 NA intron (ENSMUSG00000024350.6, intron 5 of 6) protein_coding-intron (ENSMUSG00000024350.6, intron 3 of 7) -6426 ENSMUSG00000073598.3 ENSMUSG00000073598 ENSMUST00000097617 1700066B19Rik protein_coding Interval_101518 chr3 3536618 3537256 + 0 NA intron (ENSMUSG00000017688.14, intron 1 of 9) protein_coding-intron (ENSMUSG00000017688.14, intron 1 of 9) -9431 ENSMUSG00000102283.1 ENSMUSG00000102283 ENSMUST00000193058 Gm37000 unprocessed_pseudogene Interval_58770 chr15 37984027 37984595 + 0 NA promoter-TSS (ENSMUSG00000037487.7) protein_coding-promoter-TSS (ENSMUSG00000037487.7) -13696 ENSMUSG00000037487.7 ENSMUSG00000037487 ENSMUST00000227143 Ubr5 protein_coding Interval_46574 chr13 67298093 67299139 + 0 NA intron (ENSMUSG00000055341.10, intron 1 of 3) protein_coding-intron (ENSMUSG00000055341.10, intron 1 of 3) -6982 ENSMUSG00000055341.10 ENSMUSG00000055341 ENSMUST00000192242 Zfp457 protein_coding Interval_64417 chr16 11235729 11236041 + 0 NA intron (ENSMUSG00000062203.15, intron 5 of 14) protein_coding-intron (ENSMUSG00000062203.15, intron 5 of 14) 18440 ENSMUSG00000062203.15 ENSMUSG00000062203 ENSMUST00000229660 Gspt1 protein_coding Interval_36881 chr12 54926367 54926617 + 0 NA intron (ENSMUSG00000035021.13, intron 3 of 4) protein_coding-intron (ENSMUSG00000035021.13, intron 12 of 26) 3847 ENSMUSG00000035021.13 ENSMUSG00000035021 ENSMUST00000173529 Baz1a protein_coding Interval_48900 chr13 104563416 104564365 + 0 NA Intergenic Intergenic -121041 ENSMUSG00000084860.1 ENSMUSG00000084860 ENSMUST00000131215 2610204G07Rik antisense Interval_90464 chr2 30610930 30611290 + 0 NA Intergenic Intergenic 5893 ENSMUSG00000047363.4 ENSMUSG00000047363 ENSMUST00000129719 Cstad protein_coding Interval_15078 chr10 42405586 42405905 + 0 NA intron (ENSMUSG00000038302.14, intron 4 of 10) protein_coding-intron (ENSMUSG00000038302.14, intron 6 of 12) -30144 ENSMUSG00000083429.2 ENSMUSG00000083429 ENSMUST00000117283 Gm15198 processed_pseudogene Interval_59365 chr15 51924718 51925278 + 0 NA Intergenic Intergenic 27911 ENSMUSG00000115616.1 ENSMUSG00000115616 ENSMUST00000226818 Gm48923 lincRNA Interval_156608 chr8 54521152 54521434 + 0 NA exon (ENSMUSG00000054408.9, exon 5 of 5) protein_coding-exon (ENSMUSG00000054408.9, exon 5 of 5) -7143 ENSMUSG00000110403.1 ENSMUSG00000110403 ENSMUST00000209929 Gm45553 TEC Interval_95620 chr2 112930836 112932386 + 0 NA intron (ENSMUSG00000057378.15, intron 10 of 103) protein_coding-intron (ENSMUSG00000057378.15, intron 10 of 102) -275063 ENSMUSG00000057378.15 ENSMUSG00000057378 ENSMUST00000208135 Ryr3 protein_coding Interval_165029 chr9 44034202 44034816 + 0 NA intron (ENSMUSG00000111229.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000111229.1, intron 1 of 2) 6550 ENSMUSG00000111229.1 ENSMUSG00000111229 ENSMUST00000215913 Gm39323 lincRNA Interval_105038 chr3 79984290 79984816 + 0 NA Intergenic Intergenic -70339 ENSMUSG00000103181.1 ENSMUSG00000103181 ENSMUST00000194077 A330069K06Rik lincRNA Interval_99743 chr2 164617779 164618001 + 0 NA exon (ENSMUSG00000070531.4, exon 4 of 4) protein_coding-exon (ENSMUSG00000070531.4, exon 4 of 4) -4032 ENSMUSG00000077671.1 ENSMUSG00000077671 ENSMUST00000104483 Gm24473 snoRNA Interval_166701 chr9 62104942 62105356 + 0 NA intron (ENSMUSG00000032252.14, intron 1 of 4) protein_coding-intron (ENSMUSG00000032252.14, intron 1 of 2) 17445 ENSMUSG00000092696.1 ENSMUSG00000092696 ENSMUST00000174955 Mir5133 miRNA Interval_24511 chr11 33871654 33873654 + 0 NA intron (ENSMUSG00000053519.17, intron 1 of 7) protein_coding-intron (ENSMUSG00000053519.17, intron 1 of 3) -90359 ENSMUSG00000020155.2 ENSMUSG00000020155 ENSMUST00000020362 Kcnmb1 protein_coding Interval_131323 chr5 136457086 136457273 + 0 NA intron (ENSMUSG00000029705.17, intron 1 of 20) protein_coding-intron (ENSMUSG00000029705.17, intron 2 of 23) 79298 ENSMUSG00000104369.1 ENSMUSG00000104369 ENSMUST00000192800 Gm38082 TEC Interval_118561 chr4 132509583 132510737 + 0 NA promoter-TSS (ENSMUSG00000086997.1) antisense-promoter-TSS (ENSMUSG00000086997.1) 341 ENSMUSG00000028893.8 ENSMUSG00000028893 ENSMUST00000030724 Sesn2 protein_coding Interval_89886 chr2 26227876 26228483 + 0 NA intron (ENSMUSG00000036327.18, intron 2 of 12) protein_coding-intron (ENSMUSG00000036327.18, intron 2 of 12) -2808 ENSMUSG00000036327.18 ENSMUSG00000036327 ENSMUST00000036187 Qsox2 protein_coding Interval_109338 chr3 139124093 139124715 + 0 NA Intergenic Intergenic 4367 ENSMUSG00000090801.1 ENSMUSG00000090801 ENSMUST00000170405 Gm4862 processed_pseudogene Interval_93176 chr2 70852894 70853512 + 0 NA Intergenic Intergenic -3486 ENSMUSG00000082303.1 ENSMUSG00000082303 ENSMUST00000120668 Gm13633 processed_pseudogene Interval_49712 chr13 114157745 114159477 + 0 NA Intergenic Intergenic -7019 ENSMUSG00000114213.1 ENSMUSG00000114213 ENSMUST00000225044 A430090L17Rik antisense Interval_19599 chr10 105373275 105373490 + 0 NA intron (ENSMUSG00000036019.8, intron 2 of 8) protein_coding-intron (ENSMUSG00000036019.8, intron 2 of 11) 4094 ENSMUSG00000112176.1 ENSMUSG00000112176 ENSMUST00000218706 Gm48205 TEC Interval_3879 chr1 64225831 64227045 + 0 NA intron (ENSMUSG00000101895.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000101895.1, intron 1 of 1) 76237 ENSMUSG00000086721.2 ENSMUSG00000086721 ENSMUST00000117621 Gm13750 processed_pseudogene Interval_3359 chr1 57405834 57407285 + 0 NA promoter-TSS (ENSMUSG00000048495.16) protein_coding-promoter-TSS (ENSMUSG00000048495.16) -200 ENSMUSG00000025971.6 ENSMUSG00000025971 ENSMUST00000185709 Maip1 protein_coding Interval_122616 chr5 24232600 24233280 + 0 NA exon (ENSMUSG00000105141.1, exon 1 of 1) processed_pseudogene-exon (ENSMUSG00000105141.1, exon 1 of 1) 531 ENSMUSG00000105141.1 ENSMUSG00000105141 ENSMUST00000196890 Gm43828 processed_pseudogene Interval_15214 chr10 43409667 43409872 + 0 NA intron (ENSMUSG00000038240.13, intron 2 of 2) protein_coding-intron (ENSMUSG00000038240.13, intron 6 of 7) -2762 ENSMUSG00000110772.1 ENSMUSG00000110772 ENSMUST00000216518 Gm47856 TEC Interval_166044 chr9 56029487 56030202 + 0 NA exon (ENSMUSG00000110989.1, exon 1 of 1) processed_pseudogene-exon (ENSMUSG00000110989.1, exon 1 of 1) 2102 ENSMUSG00000110989.1 ENSMUSG00000110989 ENSMUST00000217455 Gm7444 processed_pseudogene Interval_151722 chr7 126258995 126259240 + 0 NA intron (ENSMUSG00000042978.11, intron 1 of 3) protein_coding-intron (ENSMUSG00000042978.11, intron 1 of 3) 10255 ENSMUSG00000042978.11 ENSMUSG00000042978 ENSMUST00000206541 Sbk1 protein_coding Interval_23793 chr11 26301012 26301352 + 0 NA Intergenic Intergenic 36521 ENSMUSG00000065889.1 ENSMUSG00000065889 ENSMUST00000083955 Gm22868 snRNA Interval_118450 chr4 131696016 131696705 + 0 NA intron (ENSMUSG00000086856.1, intron 3 of 4) lincRNA-intron (ENSMUSG00000086856.1, intron 3 of 4) 14148 ENSMUSG00000086856.1 ENSMUSG00000086856 ENSMUST00000152128 Gm16080 lincRNA Interval_31006 chr11 97676111 97676542 + 0 NA promoter-TSS (ENSMUSG00000098881.1) miRNA-promoter-TSS (ENSMUSG00000098881.1) -734 ENSMUSG00000098881.1 ENSMUSG00000098881 ENSMUST00000184494 Mir6927 miRNA Interval_155875 chr8 40556466 40556994 + 0 NA intron (ENSMUSG00000039431.16, intron 11 of 14) protein_coding-intron (ENSMUSG00000039431.16, intron 11 of 14) 13306 ENSMUSG00000031600.11 ENSMUSG00000031600 ENSMUST00000238628 Vps37a protein_coding Interval_101619 chr3 7918582 7919087 + 0 NA Intergenic Intergenic 25499 ENSMUSG00000103399.1 ENSMUSG00000103399 ENSMUST00000194764 Gm29747 processed_pseudogene Interval_34881 chr12 12926788 12928138 + 0 NA Intergenic Intergenic 14362 ENSMUSG00000037169.15 ENSMUSG00000037169 ENSMUST00000151534 Mycn protein_coding Interval_36065 chr12 34906093 34907758 + 0 NA promoter-TSS (ENSMUSG00000004698.11) protein_coding-promoter-TSS (ENSMUSG00000004698.11) 11901 ENSMUSG00000077264.1 ENSMUSG00000077264 ENSMUST00000104076 Gm24429 snoRNA Interval_64470 chr16 11742679 11743442 + 0 NA intron (ENSMUSG00000071669.14, intron 20 of 20) protein_coding-intron (ENSMUSG00000071669.14, intron 13 of 13) -35369 ENSMUSG00000115936.1 ENSMUSG00000115936 ENSMUST00000229695 4833415N18Rik lincRNA Interval_152052 chr7 128591380 128591836 + 0 NA exon (ENSMUSG00000108795.1, exon 2 of 2) lincRNA-exon (ENSMUSG00000108795.1, exon 2 of 2) 1735 ENSMUSG00000108795.1 ENSMUSG00000108795 ENSMUST00000205396 Gm45121 lincRNA Interval_151760 chr7 126481601 126483156 + 0 NA Intergenic Intergenic -6993 ENSMUSG00000073838.10 ENSMUSG00000073838 ENSMUST00000206572 Tufm protein_coding Interval_144850 chr7 28596408 28598608 + 0 NA intron (ENSMUSG00000030602.13, intron 1 of 3) protein_coding-intron (ENSMUSG00000109336.1, intron 1 of 12) 578 ENSMUSG00000030602.13 ENSMUSG00000030602 ENSMUST00000150454 Pak4 protein_coding Interval_86596 chr19 41960994 41961330 + 0 NA intron (ENSMUSG00000025159.8, intron 8 of 25) protein_coding-intron (ENSMUSG00000025159.8, intron 7 of 29) -14026 ENSMUSG00000089102.1 ENSMUSG00000089102 ENSMUST00000158477 Gm23113 snRNA Interval_100393 chr2 168779467 168781469 + 0 NA Intergenic Intergenic 14325 ENSMUSG00000085322.2 ENSMUSG00000085322 ENSMUST00000145105 Gm14261 antisense Interval_86455 chr19 40664921 40665310 + 0 NA intron (ENSMUSG00000048120.16, intron 1 of 3) protein_coding-intron (ENSMUSG00000048120.16, intron 1 of 9) 20969 ENSMUSG00000117952.1 ENSMUSG00000117952 ENSMUST00000235613 Gm50132 sense_intronic Interval_106592 chr3 97569653 97570589 + 0 NA TTS (ENSMUSG00000028089.5) protein_coding-TTS (ENSMUSG00000028089.5) -39811 ENSMUSG00000105004.1 ENSMUSG00000105004 ENSMUST00000198613 Gm43075 TEC Interval_91375 chr2 38368712 38369251 + 0 NA exon (ENSMUSG00000000247.11, exon 5 of 5) protein_coding-exon (ENSMUSG00000000247.11, exon 5 of 5) -5001 ENSMUSG00000087539.1 ENSMUSG00000087539 ENSMUST00000137134 Gm13584 antisense Interval_154360 chr8 14975172 14975848 + 0 NA intron (ENSMUSG00000071176.10, intron 10 of 18) protein_coding-intron (ENSMUSG00000071176.10, intron 19 of 28) -13924 ENSMUSG00000090024.1 ENSMUSG00000090024 ENSMUST00000162958 Gm16350 antisense Interval_68237 chr16 70232890 70233116 + 0 NA Intergenic Intergenic 43041 ENSMUSG00000116794.1 ENSMUSG00000116794 ENSMUST00000231873 Gm49656 processed_pseudogene Interval_80480 chr18 42578777 42580014 + 0 NA exon (ENSMUSG00000042816.4, exon 1 of 1) protein_coding-exon (ENSMUSG00000042816.4, exon 1 of 1) 257 ENSMUSG00000042816.4 ENSMUSG00000042816 ENSMUST00000054738 Gpr151 protein_coding Interval_121340 chr4 155092678 155092874 + 0 NA intron (ENSMUSG00000029049.14, intron 5 of 5) protein_coding-intron (ENSMUSG00000029049.14, intron 5 of 13) 6187 ENSMUSG00000029049.14 ENSMUSG00000029049 ENSMUST00000129415 Morn1 protein_coding Interval_88204 chr19 60643541 60644221 + 0 NA Intergenic Intergenic 32594 ENSMUSG00000117790.1 ENSMUSG00000117790 ENSMUST00000236155 Gm46652 lincRNA Interval_49496 chr13 112429568 112430446 + 0 NA intron (ENSMUSG00000114468.1, intron 2 of 2) lincRNA-intron (ENSMUSG00000114468.1, intron 2 of 2) -3667 ENSMUSG00000114869.1 ENSMUSG00000114869 ENSMUST00000224307 Gm48876 lincRNA Interval_66790 chr16 37653950 37654953 + 0 NA promoter-TSS (ENSMUSG00000022820.4) protein_coding-promoter-TSS (ENSMUSG00000022820.4) -85 ENSMUSG00000022820.4 ENSMUSG00000022820 ENSMUST00000231881 Ndufb4 protein_coding Interval_32772 chr11 110447929 110449595 + 0 NA intron (ENSMUSG00000020623.11, intron 1 of 11) protein_coding-intron (ENSMUSG00000020623.11, intron 1 of 11) -28615 ENSMUSG00000020623.11 ENSMUSG00000020623 ENSMUST00000133920 Map2k6 protein_coding Interval_70955 chr17 16741631 16742764 + 0 NA Intergenic Intergenic 15744 ENSMUSG00000116944.1 ENSMUSG00000116944 ENSMUST00000231367 Gm7477 processed_pseudogene Interval_41904 chr13 4167987 4168203 + 0 NA TTS (ENSMUSG00000112986.1) processed_pseudogene-TTS (ENSMUSG00000112986.1) 1592 ENSMUSG00000113744.1 ENSMUSG00000113744 ENSMUST00000221474 Gm47925 lincRNA Interval_70563 chr17 12043971 12044724 + 0 NA intron (ENSMUSG00000023826.16, intron 1 of 2) protein_coding-intron (ENSMUSG00000023826.16, intron 1 of 2) -74982 ENSMUSG00000023827.8 ENSMUSG00000023827 ENSMUST00000167905 Agpat4 protein_coding Interval_173048 chrX 68491644 68492683 + 0 NA Intergenic Intergenic -10963 ENSMUSG00000082794.1 ENSMUSG00000082794 ENSMUST00000120092 Gm6806 processed_pseudogene Interval_101210 chr2 179526620 179527730 + 0 NA intron (ENSMUSG00000000305.12, intron 2 of 2) protein_coding-intron (ENSMUSG00000000305.12, intron 2 of 15) 86392 ENSMUSG00000083410.1 ENSMUSG00000083410 ENSMUST00000120800 Gm14300 processed_pseudogene Interval_27660 chr11 69355000 69355552 + 0 NA promoter-TSS (ENSMUSG00000018474.18) protein_coding-promoter-TSS (ENSMUSG00000018474.18) -4615 ENSMUSG00000087881.1 ENSMUSG00000087881 ENSMUST00000157256 Gm22442 scaRNA Interval_151715 chr7 126220224 126221260 + 0 NA Intergenic Intergenic 21885 ENSMUSG00000108309.1 ENSMUSG00000108309 ENSMUST00000205724 Gm44703 processed_pseudogene Interval_38715 chr12 81496748 81497668 + 0 NA TTS (ENSMUSG00000090935.10) protein_coding-TTS (ENSMUSG00000090935.10) -4032 ENSMUSG00000088651.1 ENSMUSG00000088651 ENSMUST00000158026 Gm24853 snoRNA Interval_96803 chr2 128422691 128423598 + 0 NA promoter-TSS (ENSMUSG00000079053.3) lincRNA-promoter-TSS (ENSMUSG00000079053.3) -510 ENSMUSG00000079053.3 ENSMUSG00000079053 ENSMUST00000131961 Gm14010 lincRNA Interval_157430 chr8 70309455 70309884 + 0 NA intron (ENSMUSG00000055681.14, intron 5 of 7) protein_coding-intron (ENSMUSG00000055681.14, intron 6 of 9) -6106 ENSMUSG00000087408.10 ENSMUSG00000087408 ENSMUST00000136257 Cers1 protein_coding Interval_64290 chr16 10272046 10272802 + 0 NA Intergenic Intergenic -1326 ENSMUSG00000093251.1 ENSMUSG00000093251 ENSMUST00000175510 Gm22932 miRNA Interval_81329 chr18 58095053 58095682 + 0 NA intron (ENSMUSG00000024598.9, intron 16 of 64) protein_coding-intron (ENSMUSG00000024598.9, intron 16 of 64) 114559 ENSMUSG00000024598.9 ENSMUSG00000024598 ENSMUST00000235779 Fbn2 protein_coding Interval_33672 chr11 117857188 117858275 + 0 NA Intergenic Intergenic -3021 ENSMUSG00000070330.2 ENSMUSG00000070330 ENSMUST00000093905 Tmem235 protein_coding Interval_139555 chr6 100984319 100985453 + 0 NA Intergenic Intergenic 23897 ENSMUSG00000108056.1 ENSMUSG00000108056 ENSMUST00000203303 Gm43941 processed_pseudogene Interval_49233 chr13 109682993 109683402 + 0 NA intron (ENSMUSG00000021699.17, intron 1 of 14) protein_coding-intron (ENSMUSG00000021699.17, intron 1 of 14) -220612 ENSMUSG00000084651.1 ENSMUSG00000084651 ENSMUST00000122702 Mir1904 miRNA Interval_51179 chr14 24490161 24491458 + 0 NA promoter-TSS (ENSMUSG00000025290.17) protein_coding-promoter-TSS (ENSMUSG00000025290.17) 91 ENSMUSG00000025290.17 ENSMUSG00000025290 ENSMUST00000224699 Rps24 protein_coding Interval_7206 chr1 127796458 127797118 + 0 NA TTS (ENSMUSG00000026349.14) protein_coding-TTS (ENSMUSG00000026349.14) 217 ENSMUSG00000026349.14 ENSMUSG00000026349 ENSMUST00000153359 Ccnt2 protein_coding Interval_81626 chr18 62348863 62350090 + 0 NA intron (ENSMUSG00000026322.9, intron 1 of 5) protein_coding-intron (ENSMUSG00000026322.9, intron 2 of 6) 8426 ENSMUSG00000026322.9 ENSMUSG00000026322 ENSMUST00000236691 Htr4 protein_coding Interval_76313 chr17 78970722 78970985 + 0 NA TTS (ENSMUSG00000024070.15) protein_coding-TTS (ENSMUSG00000024070.15) 25826 ENSMUSG00000024082.5 ENSMUSG00000024082 ENSMUST00000232821 Ndufaf7 protein_coding Interval_129062 chr5 117148192 117148397 + 0 NA intron (ENSMUSG00000061288.13, intron 1 of 12) protein_coding-intron (ENSMUSG00000061288.13, intron 1 of 19) 14706 ENSMUSG00000061288.13 ENSMUSG00000061288 ENSMUST00000111975 Taok3 protein_coding Interval_11534 chr1 182509388 182509743 + 0 NA intron (ENSMUSG00000026509.15, intron 2 of 9) protein_coding-intron (ENSMUSG00000026509.15, intron 2 of 20) 15409 ENSMUSG00000104415.1 ENSMUSG00000104415 ENSMUST00000192742 Gm37069 TEC Interval_32831 chr11 111323831 111324103 + 0 NA Intergenic Intergenic 47867 ENSMUSG00000082272.1 ENSMUSG00000082272 ENSMUST00000121873 Gm11675 processed_pseudogene Interval_76374 chr17 79708055 79708494 + 0 NA exon (ENSMUSG00000024087.4, exon 3 of 3) protein_coding-exon (ENSMUSG00000024087.4, exon 3 of 3) 5381 ENSMUSG00000024087.4 ENSMUSG00000024087 ENSMUST00000024894 Cyp1b1 protein_coding Interval_52040 chr14 34773833 34774572 + 0 NA Intergenic Intergenic -4147 ENSMUSG00000115109.1 ENSMUSG00000115109 ENSMUST00000228194 Gm49032 lincRNA Interval_171067 chr9 114091830 114092512 + 0 NA intron (ENSMUSG00000086596.2, intron 4 of 4) protein_coding-intron (ENSMUSG00000086596.2, intron 4 of 4) 24506 ENSMUSG00000118582.1 ENSMUSG00000118582 ENSMUST00000239187 AC157997.1 unprocessed_pseudogene Interval_161954 chr8 124026133 124026363 + 0 NA intron (ENSMUSG00000031976.14, intron 3 of 9) protein_coding-intron (ENSMUSG00000031976.14, intron 2 of 8) 3607 ENSMUSG00000088414.1 ENSMUSG00000088414 ENSMUST00000157789 Mir1967 miRNA Interval_92514 chr2 60239446 60239698 + 0 NA intron (ENSMUSG00000026977.17, intron 6 of 8) protein_coding-intron (ENSMUSG00000026977.17, intron 6 of 9) 29659 ENSMUSG00000026977.17 ENSMUSG00000026977 ENSMUST00000136367 Marchf7 protein_coding Interval_96064 chr2 119530250 119530550 + 0 NA intron (ENSMUSG00000048647.9, intron 5 of 10) protein_coding-intron (ENSMUSG00000048647.9, intron 7 of 12) 11113 ENSMUSG00000048647.9 ENSMUSG00000048647 ENSMUST00000133668 Exd1 protein_coding Interval_129526 chr5 120714099 120714848 + 0 NA Intergenic Intergenic 21102 ENSMUSG00000032690.16 ENSMUSG00000032690 ENSMUST00000146101 Oas2 protein_coding Interval_132177 chr5 143129015 143129465 + 0 NA Intergenic Intergenic 8960 ENSMUSG00000090981.6 ENSMUSG00000090981 ENSMUST00000218872 Olfr718-ps1 protein_coding Interval_72774 chr17 32074841 32075619 + 0 NA TTS (ENSMUSG00000002791.17) transcribed_unprocessed_pseudogene-TTS (ENSMUSG00000002791.17) 15025 ENSMUSG00000002791.17 ENSMUSG00000002791 ENSMUST00000235497 Pdxk-ps transcribed_unprocessed_pseudogene Interval_41000 chr12 110531724 110533643 + 0 NA intron (ENSMUSG00000017843.14, intron 4 of 12) protein_coding-intron (ENSMUSG00000017843.14, intron 2 of 13) -47067 ENSMUSG00000113585.1 ENSMUSG00000113585 ENSMUST00000222863 Gm19605 processed_transcript Interval_100735 chr2 172221771 172222210 + 0 NA Intergenic Intergenic -26502 ENSMUSG00000038537.1 ENSMUSG00000038537 ENSMUST00000038532 Mc3r protein_coding Interval_3664 chr1 60488727 60489157 + 0 NA exon (ENSMUSG00000026014.15, exon 14 of 14) protein_coding-exon (ENSMUSG00000026014.15, exon 14 of 14) 14323 ENSMUSG00000026014.15 ENSMUSG00000026014 ENSMUST00000142258 Raph1 protein_coding Interval_124384 chr5 45414377 45415489 + 0 NA intron (ENSMUSG00000029092.9, intron 1 of 5) lincRNA-intron (ENSMUSG00000029092.9, intron 1 of 5) -19456 ENSMUSG00000105255.1 ENSMUSG00000105255 ENSMUST00000196216 Gm42413 antisense Interval_33484 chr11 116827471 116828458 + 0 NA promoter-TSS (ENSMUSG00000020814.13) protein_coding-promoter-TSS (ENSMUSG00000020814.13) 39 ENSMUSG00000020814.13 ENSMUSG00000020814 ENSMUST00000150015 Mxra7 protein_coding Interval_60956 chr15 78173714 78174745 + 0 NA promoter-TSS (ENSMUSG00000016637.7) protein_coding-promoter-TSS (ENSMUSG00000016637.7) -232 ENSMUSG00000116697.1 ENSMUSG00000116697 ENSMUST00000231923 Gm49694 lincRNA Interval_100476 chr2 169304293 169304904 + 0 NA Intergenic Intergenic 69607 ENSMUSG00000085369.1 ENSMUSG00000085369 ENSMUST00000152494 9430093N23Rik lincRNA Interval_162106 chr8 125176434 125177707 + 0 NA intron (ENSMUSG00000043051.17, intron 10 of 13) protein_coding-intron (ENSMUSG00000043051.17, intron 9 of 12) 50253 ENSMUSG00000086694.1 ENSMUSG00000086694 ENSMUST00000156666 Gm16237 antisense Interval_75316 chr17 65844648 65844890 + 0 NA Intergenic Intergenic 15821 ENSMUSG00000061950.17 ENSMUSG00000061950 ENSMUST00000162703 Ppp4r1 protein_coding Interval_54672 chr14 73162571 73163376 + 0 NA TTS (ENSMUSG00000022106.14) protein_coding-TTS (ENSMUSG00000022106.14) 20110 ENSMUSG00000022106.14 ENSMUSG00000022106 ENSMUST00000170278 Rcbtb2 protein_coding Interval_170274 chr9 106614792 106615801 + 0 NA Intergenic Intergenic -10685 ENSMUSG00000091129.3 ENSMUSG00000091129 ENSMUST00000171091 Iqcf6 protein_coding Interval_68985 chr16 89945169 89946074 + 0 NA intron (ENSMUSG00000002489.16, intron 2 of 27) protein_coding-intron (ENSMUSG00000002489.16, intron 2 of 27) -144362 ENSMUSG00000116536.1 ENSMUSG00000116536 ENSMUST00000232386 Gm2805 processed_pseudogene Interval_83123 chr18 81674587 81675454 + 0 NA Intergenic Intergenic -26079 ENSMUSG00000118172.1 ENSMUSG00000118172 ENSMUST00000235996 Gm50414 lincRNA Interval_59507 chr15 54776677 54776869 + 0 NA Intergenic Intergenic -11260 ENSMUSG00000098237.1 ENSMUSG00000098237 ENSMUST00000182543 Gm7577 processed_pseudogene Interval_169692 chr9 100424905 100425990 + 0 NA Intergenic Intergenic 20952 ENSMUSG00000100122.1 ENSMUSG00000100122 ENSMUST00000191093 Gm28267 processed_pseudogene Interval_44046 chr13 40467575 40467872 + 0 NA Intergenic Intergenic -28465 ENSMUSG00000114248.1 ENSMUSG00000114248 ENSMUST00000226074 Gm8352 processed_pseudogene Interval_110749 chr4 8025498 8026864 + 0 NA Intergenic Intergenic -92439 ENSMUSG00000083068.1 ENSMUSG00000083068 ENSMUST00000120050 Gm11800 processed_pseudogene Interval_159263 chr8 92444521 92444940 + 0 NA Intergenic Intergenic -21037 ENSMUSG00000110290.1 ENSMUSG00000110290 ENSMUST00000210010 Gm45336 lincRNA Interval_38578 chr12 80227804 80228421 + 0 NA intron (ENSMUSG00000015143.15, intron 1 of 20) protein_coding-intron (ENSMUSG00000015143.15, intron 1 of 20) 18869 ENSMUSG00000112852.1 ENSMUSG00000112852 ENSMUST00000218235 Gm47767 antisense Interval_35494 chr12 23069920 23070959 + 0 NA Intergenic Intergenic 22954 ENSMUSG00000113751.1 ENSMUSG00000113751 ENSMUST00000223096 Gm9293 unprocessed_pseudogene Interval_108403 chr3 126681474 126681843 + 0 NA intron (ENSMUSG00000053819.16, intron 2 of 20) protein_coding-intron (ENSMUSG00000053819.16, intron 2 of 18) -12614 ENSMUSG00000086679.2 ENSMUSG00000086679 ENSMUST00000132762 Gm15551 antisense Interval_64934 chr16 17330972 17331186 + 0 NA promoter-TSS (ENSMUSG00000022766.14) protein_coding-promoter-TSS (ENSMUSG00000022766.14) -304 ENSMUSG00000022766.14 ENSMUSG00000022766 ENSMUST00000231884 Serpind1 protein_coding Interval_70963 chr17 16872656 16872929 + 0 NA Intergenic Intergenic 3874 ENSMUSG00000116623.1 ENSMUSG00000116623 ENSMUST00000231561 Gm49775 processed_pseudogene Interval_114956 chr4 87662997 87663523 + 0 NA Intergenic Intergenic 82471 ENSMUSG00000082443.1 ENSMUSG00000082443 ENSMUST00000118382 Gm12604 processed_pseudogene Interval_60103 chr15 65637452 65638029 + 0 NA Intergenic Intergenic 50408 ENSMUSG00000115402.1 ENSMUSG00000115402 ENSMUST00000227091 Gm49243 processed_pseudogene Interval_146235 chr7 44880328 44881426 + 0 NA TTS (ENSMUSG00000002968.9) protein_coding-TTS (ENSMUSG00000002968.9) 3833 ENSMUSG00000002968.9 ENSMUSG00000002968 ENSMUST00000207196 Med25 protein_coding Interval_35570 chr12 24888420 24888727 + 0 NA intron (ENSMUSG00000020646.17, intron 3 of 11) protein_coding-intron (ENSMUSG00000020646.17, intron 1 of 9) 56942 ENSMUSG00000020646.17 ENSMUSG00000020646 ENSMUST00000222994 Mboat2 protein_coding Interval_13383 chr10 17605561 17606218 + 0 NA intron (ENSMUSG00000112629.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000112629.1, intron 1 of 2) 52624 ENSMUSG00000112629.1 ENSMUSG00000112629 ENSMUST00000219966 Gm47771 lincRNA Interval_88570 chr2 6236780 6237943 + 0 NA intron (ENSMUSG00000087125.1, intron 1 of 6) antisense-intron (ENSMUSG00000087125.1, intron 1 of 6) 19905 ENSMUSG00000087485.1 ENSMUSG00000087485 ENSMUST00000131190 Gm13383 lincRNA Interval_130708 chr5 129918083 129919629 + 0 NA Intergenic Intergenic 10316 ENSMUSG00000095789.6 ENSMUSG00000095789 ENSMUST00000192787 Nupr1l protein_coding Interval_134953 chr6 34085230 34085687 + 0 NA intron (ENSMUSG00000056215.13, intron 11 of 15) protein_coding-intron (ENSMUSG00000056215.13, intron 11 of 19) 56010 ENSMUSG00000056215.13 ENSMUSG00000056215 ENSMUST00000141078 Lrguk protein_coding Interval_87993 chr19 57642305 57643211 + 0 NA intron (ENSMUSG00000054843.9, intron 5 of 28) protein_coding-intron (ENSMUSG00000054843.9, intron 5 of 28) 31724 ENSMUSG00000054843.9 ENSMUSG00000054843 ENSMUST00000077282 Atrnl1 protein_coding Interval_98801 chr2 155091043 155092138 + 0 NA intron (ENSMUSG00000109877.1, intron 1 of 1) antisense-intron (ENSMUSG00000109877.1, intron 1 of 1) 8491 ENSMUSG00000087254.1 ENSMUSG00000087254 ENSMUST00000142569 2310005A03Rik lincRNA Interval_72740 chr17 31855086 31856372 + 0 NA promoter-TSS (ENSMUSG00000024042.7) protein_coding-promoter-TSS (ENSMUSG00000024042.7) -4154 ENSMUSG00000024042.7 ENSMUSG00000024042 ENSMUST00000234142 Sik1 protein_coding Interval_12755 chr10 4870208 4870517 + 0 NA intron (ENSMUSG00000019768.16, intron 6 of 9) protein_coding-intron (ENSMUSG00000019768.16, intron 5 of 8) 166094 ENSMUSG00000093189.1 ENSMUSG00000093189 ENSMUST00000175448 Gm25694 ribozyme Interval_107892 chr3 116632363 116632563 + 0 NA TTS (ENSMUSG00000089911.4) protein_coding-TTS (ENSMUSG00000089911.4) 792 ENSMUSG00000105339.1 ENSMUSG00000105339 ENSMUST00000197572 Gm42457 antisense Interval_102408 chr3 24705563 24706385 + 0 NA intron (ENSMUSG00000102758.3, intron 2 of 2) protein_coding-intron (ENSMUSG00000102758.3, intron 1 of 13) -12742 ENSMUSG00000088115.1 ENSMUSG00000088115 ENSMUST00000157490 Gm24062 misc_RNA Interval_112352 chr4 40772947 40775018 + 0 NA Intergenic Intergenic 1582 ENSMUSG00000056412.6 ENSMUSG00000056412 ENSMUST00000121600 Psenen-ps processed_pseudogene Interval_7742 chr1 133379306 133381005 + 0 NA exon (ENSMUSG00000070644.13, exon 7 of 7) protein_coding-exon (ENSMUSG00000070644.13, exon 7 of 7) 14391 ENSMUSG00000070644.13 ENSMUSG00000070644 ENSMUST00000131450 Etnk2 protein_coding Interval_145567 chr7 35648768 35649387 + 0 NA Intergenic Intergenic -6033 ENSMUSG00000030417.15 ENSMUSG00000030417 ENSMUST00000130340 Pdcd5 protein_coding Interval_161086 chr8 117372212 117372442 + 0 NA intron (ENSMUSG00000034390.16, intron 1 of 20) protein_coding-intron (ENSMUSG00000034390.16, intron 1 of 20) -51089 ENSMUSG00000034390.16 ENSMUSG00000034390 ENSMUST00000212884 Cmip protein_coding Interval_68732 chr16 85151543 85152096 + 0 NA intron (ENSMUSG00000114988.1, intron 2 of 2) protein_coding-intron (ENSMUSG00000022892.11, intron 1 of 15) 2990 ENSMUSG00000114988.1 ENSMUSG00000114988 ENSMUST00000227036 Gm49226 antisense Interval_37498 chr12 69371337 69373305 + 0 NA exon (ENSMUSG00000052673.2, exon 1 of 1) antisense-exon (ENSMUSG00000052673.2, exon 1 of 1) 147 ENSMUSG00000052673.2 ENSMUSG00000052673 ENSMUST00000053451 Gm9887 antisense Interval_41262 chr12 112231471 112231702 + 0 NA Intergenic Intergenic -26433 ENSMUSG00000113282.1 ENSMUSG00000113282 ENSMUST00000220716 Gm20368 processed_pseudogene Interval_135773 chr6 47214630 47215773 + 0 NA intron (ENSMUSG00000039419.17, intron 21 of 23) protein_coding-intron (ENSMUSG00000039419.17, intron 21 of 23) 170045 ENSMUSG00000107952.1 ENSMUSG00000107952 ENSMUST00000203583 Gm6352 processed_pseudogene Interval_151339 chr7 121205495 121205775 + 0 NA Intergenic Intergenic 18359 ENSMUSG00000108502.1 ENSMUSG00000108502 ENSMUST00000206527 Gm9240 processed_pseudogene Interval_15344 chr10 44861777 44862011 + 0 NA exon (ENSMUSG00000111868.1, exon 2 of 3) lincRNA-exon (ENSMUSG00000111868.1, exon 2 of 3) 4892 ENSMUSG00000111868.1 ENSMUSG00000111868 ENSMUST00000215415 Gm47398 lincRNA Interval_42375 chr13 12446996 12448366 + 0 NA intron (ENSMUSG00000057554.13, intron 8 of 9) protein_coding-intron (ENSMUSG00000057554.13, intron 8 of 9) 8842 ENSMUSG00000057554.13 ENSMUSG00000057554 ENSMUST00000152478 Lgals8 protein_coding Interval_787 chr1 11151449 11151783 + 0 NA intron (ENSMUSG00000048960.13, intron 2 of 4) protein_coding-intron (ENSMUSG00000048960.13, intron 19 of 39) -17378 ENSMUSG00000077318.1 ENSMUSG00000077318 ENSMUST00000104130 Gm24173 snoRNA Interval_156640 chr8 56232091 56232665 + 0 NA Intergenic Intergenic -62207 ENSMUSG00000031613.9 ENSMUSG00000031613 ENSMUST00000034026 Hpgd protein_coding Interval_83705 chr19 3864771 3865250 + 0 NA exon (ENSMUSG00000024843.15, exon 2 of 2) protein_coding-exon (ENSMUSG00000024843.15, exon 2 of 2) 2663 ENSMUSG00000117912.1 ENSMUSG00000117912 ENSMUST00000235621 Gm50383 antisense Interval_65066 chr16 18811010 18812762 + 0 NA promoter-TSS (ENSMUSG00000000028.15) protein_coding-promoter-TSS (ENSMUSG00000000028.15) 62 ENSMUSG00000005262.13 ENSMUSG00000005262 ENSMUST00000170325 Ufd1 protein_coding Interval_137817 chr6 82735075 82735558 + 0 NA exon (ENSMUSG00000000628.10, exon 11 of 18) protein_coding-exon (ENSMUSG00000000628.10, exon 11 of 18) -28966 ENSMUSG00000090293.1 ENSMUSG00000090293 ENSMUST00000168990 Gm17034 antisense Interval_160355 chr8 108713870 108715819 + 0 NA exon (ENSMUSG00000038872.10, exon 1 of 10) protein_coding-exon (ENSMUSG00000038872.10, exon 1 of 10) -22749 ENSMUSG00000104292.1 ENSMUSG00000104292 ENSMUST00000191614 Gm38042 TEC Interval_33241 chr11 115439840 115440143 + 0 NA promoter-TSS (ENSMUSG00000070332.4) protein_coding-promoter-TSS (ENSMUSG00000070332.4) -554 ENSMUSG00000070332.4 ENSMUSG00000070332 ENSMUST00000093914 Trim80 protein_coding Interval_132667 chr5 147051351 147052514 + 0 NA intron (ENSMUSG00000016520.7, intron 1 of 9) protein_coding-intron (ENSMUSG00000016520.7, intron 1 of 9) -25632 ENSMUSG00000029642.11 ENSMUSG00000029642 ENSMUST00000196288 Polr1d protein_coding Interval_98893 chr2 155840811 155841570 + 0 NA Intergenic Intergenic -6336 ENSMUSG00000074647.4 ENSMUSG00000074647 ENSMUST00000239423 Fam83c protein_coding Interval_64302 chr16 10350784 10351844 + 0 NA Intergenic Intergenic -20029 ENSMUSG00000116270.1 ENSMUSG00000116270 ENSMUST00000229862 Gm1600 lincRNA Interval_153653 chr8 4292888 4293136 + 0 NA intron (ENSMUSG00000040028.10, intron 5 of 5) protein_coding-intron (ENSMUSG00000040028.10, intron 5 of 5) -17130 ENSMUSG00000002949.15 ENSMUSG00000002949 ENSMUST00000160371 Timm44 protein_coding Interval_84803 chr19 16870625 16871189 + 0 NA promoter-TSS (ENSMUSG00000118126.1) lincRNA-promoter-TSS (ENSMUSG00000118126.1) 2898 ENSMUSG00000056829.4 ENSMUSG00000056829 ENSMUST00000072915 Foxb2 protein_coding Interval_83799 chr19 4766351 4766747 + 0 NA TTS (ENSMUSG00000033760.17) protein_coding-TTS (ENSMUSG00000033760.17) -1378 ENSMUSG00000103651.1 ENSMUSG00000103651 ENSMUST00000195512 Gm37206 TEC Interval_158092 chr8 78670743 78671101 + 0 NA intron (ENSMUSG00000031684.11, intron 6 of 10) protein_coding-intron (ENSMUSG00000031684.11, intron 6 of 11) 66628 ENSMUSG00000110244.1 ENSMUSG00000110244 ENSMUST00000211775 Gm2253 processed_pseudogene Interval_52228 chr14 40886770 40887436 + 0 NA intron (ENSMUSG00000037833.14, intron 1 of 3) protein_coding-intron (ENSMUSG00000037833.14, intron 1 of 7) 6163 ENSMUSG00000037833.14 ENSMUSG00000037833 ENSMUST00000225854 Sh2d4b protein_coding Interval_153972 chr8 11570160 11570424 + 0 NA Intergenic Intergenic 14721 ENSMUSG00000045969.8 ENSMUSG00000045969 ENSMUST00000209565 Ing1 protein_coding Interval_148589 chr7 82869606 82869952 + 0 NA exon (ENSMUSG00000057706.7, exon 2 of 2) protein_coding-exon (ENSMUSG00000057706.7, exon 2 of 2) 2446 ENSMUSG00000057706.7 ENSMUSG00000057706 ENSMUST00000082237 Mex3b protein_coding Interval_97805 chr2 144186502 144186867 + 0 NA intron (ENSMUSG00000074758.10, intron 1 of 3) lincRNA-intron (ENSMUSG00000074758.10, intron 1 of 3) 4367 ENSMUSG00000074758.10 ENSMUSG00000074758 ENSMUST00000209482 Gm5535 lincRNA Interval_62549 chr15 94574289 94574993 + 0 NA intron (ENSMUSG00000059883.16, intron 11 of 11) protein_coding-intron (ENSMUSG00000059883.16, intron 11 of 11) 10834 ENSMUSG00000022451.12 ENSMUSG00000022451 ENSMUST00000152590 Twf1 protein_coding Interval_89789 chr2 25446720 25446893 + 0 NA TTS (ENSMUSG00000026944.18) protein_coding-TTS (ENSMUSG00000026944.18) 4027 ENSMUSG00000104741.1 ENSMUSG00000104741 ENSMUST00000199405 Mir3087 miRNA Interval_172834 chrX 50924721 50925337 + 0 NA intron (ENSMUSG00000036131.12, intron 1 of 10) protein_coding-intron (ENSMUSG00000036131.12, intron 1 of 11) 17681 ENSMUSG00000036131.12 ENSMUSG00000036131 ENSMUST00000060650 Frmd7 protein_coding Interval_172347 chrX 13294476 13297854 + 0 NA Intergenic Intergenic -6120 ENSMUSG00000081255.1 ENSMUSG00000081255 ENSMUST00000119296 Gm5380 processed_pseudogene Interval_71057 chr17 17542643 17543334 + 0 NA intron (ENSMUSG00000023845.7, intron 12 of 17) protein_coding-intron (ENSMUSG00000023845.7, intron 13 of 17) 42645 ENSMUSG00000116532.1 ENSMUSG00000116532 ENSMUST00000232178 Gm5232 processed_pseudogene Interval_104514 chr3 67165964 67166191 + 0 NA intron (ENSMUSG00000034544.17, intron 4 of 8) protein_coding-intron (ENSMUSG00000034544.17, intron 3 of 8) 110119 ENSMUSG00000065245.1 ENSMUSG00000065245 ENSMUST00000083311 Gm22295 snRNA Interval_2598 chr1 41389983 41390845 + 0 NA Intergenic Intergenic 139129 ENSMUSG00000100185.1 ENSMUSG00000100185 ENSMUST00000191087 Gm28634 lincRNA Interval_29143 chr11 80622842 80623218 + 0 NA intron (ENSMUSG00000035441.14, intron 16 of 20) protein_coding-intron (ENSMUSG00000035441.14, intron 16 of 21) -113924 ENSMUSG00000085078.1 ENSMUSG00000085078 ENSMUST00000133400 C030013C21Rik sense_intronic Interval_21831 chr11 4628916 4630235 + 0 NA intron (ENSMUSG00000056288.11, intron 1 of 3) antisense-intron (ENSMUSG00000056288.11, intron 1 of 3) 436 ENSMUSG00000056288.11 ENSMUSG00000056288 ENSMUST00000141157 Gm11961 antisense Interval_109076 chr3 135593715 135594670 + 0 NA intron (ENSMUSG00000028163.17, intron 19 of 24) protein_coding-intron (ENSMUSG00000028163.17, intron 19 of 24) 9667 ENSMUSG00000028163.17 ENSMUSG00000028163 ENSMUST00000196246 Nfkb1 protein_coding Interval_99019 chr2 156701030 156701442 + 0 NA exon (ENSMUSG00000061689.15, exon 1 of 11) protein_coding-exon (ENSMUSG00000061689.15, exon 1 of 11) 19673 ENSMUSG00000086638.7 ENSMUSG00000086638 ENSMUST00000130089 4930405A21Rik processed_transcript Interval_132117 chr5 142823103 142824011 + 0 NA Intergenic Intergenic 29642 ENSMUSG00000082308.1 ENSMUSG00000082308 ENSMUST00000117498 Gm15770 processed_pseudogene Interval_55814 chr14 100461418 100461828 + 0 NA intron (ENSMUSG00000115821.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000115821.1, intron 1 of 1) 2200 ENSMUSG00000115821.1 ENSMUSG00000115821 ENSMUST00000227740 6330576A10Rik lincRNA Interval_87567 chr19 53490078 53490343 + 0 NA Intergenic Intergenic 6716 ENSMUSG00000118378.1 ENSMUSG00000118378 ENSMUST00000235451 Gm50393 TEC Interval_168259 chr9 78225373 78225687 + 0 NA Intergenic Intergenic -9473 ENSMUSG00000074183.3 ENSMUSG00000074183 ENSMUST00000127192 Gsta1 protein_coding Interval_2948 chr1 51486338 51487383 + 0 NA Intergenic Intergenic -8461 ENSMUSG00000026107.11 ENSMUSG00000026107 ENSMUST00000188303 Nabp1 protein_coding Interval_35760 chr12 29071596 29072205 + 0 NA Intergenic Intergenic 34837 ENSMUSG00000113544.1 ENSMUSG00000113544 ENSMUST00000222186 4833405L11Rik lincRNA Interval_64550 chr16 13229887 13230262 + 0 NA Intergenic Intergenic 97683 ENSMUSG00000022545.13 ENSMUSG00000022545 ENSMUST00000156393 Ercc4 protein_coding Interval_105020 chr3 79838692 79838982 + 0 NA TTS (ENSMUSG00000027956.11) protein_coding-TTS (ENSMUSG00000027956.11) 3904 ENSMUSG00000077461.1 ENSMUSG00000077461 ENSMUST00000104273 Gm26420 snRNA Interval_15429 chr10 46283643 46283850 + 0 NA intron (ENSMUSG00000111182.1, intron 3 of 3) lincRNA-intron (ENSMUSG00000111182.1, intron 3 of 3) -17071 ENSMUSG00000111182.1 ENSMUSG00000111182 ENSMUST00000217441 Gm35430 lincRNA Interval_156776 chr8 58935355 58936662 + 0 NA Intergenic Intergenic 23751 ENSMUSG00000049946.7 ENSMUSG00000049946 ENSMUST00000160055 BC030500 protein_coding Interval_16449 chr10 62928331 62929059 + 0 NA exon (ENSMUSG00000071253.8, exon 2 of 2) protein_coding-exon (ENSMUSG00000071253.8, exon 2 of 2) -5171 ENSMUSG00000088875.1 ENSMUSG00000088875 ENSMUST00000158250 Gm25862 snoRNA Interval_72233 chr17 28721963 28722358 + 0 NA intron (ENSMUSG00000053436.15, intron 4 of 12) protein_coding-intron (ENSMUSG00000053436.15, intron 3 of 11) -3923 ENSMUSG00000117145.1 ENSMUSG00000117145 ENSMUST00000233003 Gm4356 protein_coding Interval_46224 chr13 62737102 62737367 + 0 NA promoter-TSS (ENSMUSG00000113078.1) TEC-promoter-TSS (ENSMUSG00000113078.1) -39 ENSMUSG00000113078.1 ENSMUSG00000113078 ENSMUST00000222940 Gm48734 TEC Interval_136778 chr6 59928118 59928548 + 0 NA Intergenic Intergenic -14018 ENSMUSG00000108110.1 ENSMUSG00000108110 ENSMUST00000204558 Gm18012 processed_pseudogene Interval_78255 chr18 10826440 10827423 + 0 NA Intergenic Intergenic -32749 ENSMUSG00000117593.1 ENSMUSG00000117593 ENSMUST00000235066 Gm18764 processed_pseudogene Interval_122186 chr5 19154083 19155085 + 0 NA Intergenic Intergenic 47021 ENSMUSG00000106498.1 ENSMUSG00000106498 ENSMUST00000197967 Gm43032 TEC Interval_83687 chr19 3730865 3732219 + 0 NA promoter-TSS (ENSMUSG00000118231.1) processed_pseudogene-promoter-TSS (ENSMUSG00000118231.1) -530 ENSMUSG00000118231.1 ENSMUSG00000118231 ENSMUST00000237464 Gm2141 processed_pseudogene Interval_130329 chr5 125799635 125800544 + 0 NA Intergenic Intergenic 48651 ENSMUSG00000091970.3 ENSMUSG00000091970 ENSMUST00000164138 Gm4868 processed_pseudogene Interval_92655 chr2 62046592 62048451 + 0 NA intron (ENSMUSG00000026904.17, intron 1 of 26) protein_coding-intron (ENSMUSG00000026904.17, intron 1 of 24) -76849 ENSMUSG00000083018.1 ENSMUSG00000083018 ENSMUST00000121668 Gm13555 processed_pseudogene Interval_120688 chr4 150117483 150119530 + 0 NA promoter-TSS (ENSMUSG00000028976.10) protein_coding-promoter-TSS (ENSMUSG00000028976.10) 757 ENSMUSG00000087094.1 ENSMUSG00000087094 ENSMUST00000126212 Gm13093 lincRNA Interval_59768 chr15 59119933 59121753 + 0 NA Intergenic Intergenic -38838 ENSMUSG00000022353.10 ENSMUSG00000022353 ENSMUST00000227797 Mtss1 protein_coding Interval_9593 chr1 160025130 160025401 + 0 NA Intergenic Intergenic 19066 ENSMUSG00000104111.1 ENSMUSG00000104111 ENSMUST00000193461 Gm37294 lincRNA Interval_103475 chr3 42290926 42291131 + 0 NA Intergenic Intergenic 71749 ENSMUSG00000104089.1 ENSMUSG00000104089 ENSMUST00000195689 Gm38274 processed_pseudogene Interval_48463 chr13 99201865 99202333 + 0 NA intron (ENSMUSG00000050919.9, intron 1 of 4) protein_coding-intron (ENSMUSG00000050919.9, intron 1 of 4) 17276 ENSMUSG00000050919.9 ENSMUSG00000050919 ENSMUST00000056558 Zfp366 protein_coding Interval_77244 chr17 87550337 87551186 + 0 NA Intergenic Intergenic -20017 ENSMUSG00000117361.1 ENSMUSG00000117361 ENSMUST00000234692 Gm30984 lincRNA Interval_45228 chr13 53309268 53310492 + 0 NA Intergenic Intergenic -34222 ENSMUSG00000021464.14 ENSMUSG00000021464 ENSMUST00000149299 Ror2 protein_coding Interval_82797 chr18 77100633 77101342 + 0 NA intron (ENSMUSG00000025423.16, intron 2 of 14) protein_coding-intron (ENSMUSG00000025423.16, intron 2 of 12) 35742 ENSMUSG00000025423.16 ENSMUSG00000025423 ENSMUST00000168882 Pias2 protein_coding Interval_112110 chr4 34756792 34757223 + 0 NA promoter-TSS (ENSMUSG00000071015.2) protein_coding-promoter-TSS (ENSMUSG00000071015.2) -744 ENSMUSG00000071015.2 ENSMUSG00000071015 ENSMUST00000095129 Gm136 protein_coding Interval_18958 chr10 93397347 93397884 + 0 NA promoter-TSS (ENSMUSG00000111316.1) processed_pseudogene-promoter-TSS (ENSMUSG00000111316.1) -342 ENSMUSG00000111316.1 ENSMUSG00000111316 ENSMUST00000214319 Gm47344 processed_pseudogene Interval_22719 chr11 13903465 13904274 + 0 NA Intergenic Intergenic -258210 ENSMUSG00000081631.1 ENSMUSG00000081631 ENSMUST00000121451 Gm12005 processed_pseudogene Interval_119007 chr4 134968041 134968965 + 0 NA Intergenic Intergenic 37601 ENSMUSG00000028821.8 ENSMUSG00000028821 ENSMUST00000144037 Syf2 protein_coding Interval_44858 chr13 49156570 49156898 + 0 NA Intergenic Intergenic -8722 ENSMUSG00000037989.15 ENSMUSG00000037989 ENSMUST00000159633 Wnk2 protein_coding Interval_79325 chr18 30518909 30520455 + 0 NA Intergenic Intergenic -24309 ENSMUSG00000055771.2 ENSMUSG00000055771 ENSMUST00000069529 Gm7936 processed_pseudogene Interval_141259 chr6 126598763 126599819 + 0 NA Intergenic Intergenic -43122 ENSMUSG00000110390.1 ENSMUSG00000110390 ENSMUST00000210335 Gm45869 lincRNA Interval_63517 chr15 101655268 101655702 + 0 NA Intergenic Intergenic -8105 ENSMUSG00000095241.2 ENSMUSG00000095241 ENSMUST00000100184 Gm5478 protein_coding Interval_4140 chr1 70381726 70382043 + 0 NA intron (ENSMUSG00000053153.14, intron 5 of 7) protein_coding-intron (ENSMUSG00000053153.14, intron 14 of 16) -68973 ENSMUSG00000103052.1 ENSMUSG00000103052 ENSMUST00000194431 Gm38272 TEC Interval_99083 chr2 157058021 157059637 + 0 NA intron (ENSMUSG00000055485.6, intron 2 of 14) protein_coding-intron (ENSMUSG00000055485.6, intron 2 of 14) -28226 ENSMUSG00000074628.9 ENSMUSG00000074628 ENSMUST00000099140 Tldc2 protein_coding Interval_112942 chr4 46271010 46271717 + 0 NA Intergenic Intergenic 3477 ENSMUSG00000081483.1 ENSMUSG00000081483 ENSMUST00000117947 Gm12445 processed_pseudogene Interval_171634 chr9 119731444 119732083 + 0 NA Intergenic Intergenic -43724 ENSMUSG00000034533.10 ENSMUSG00000034533 ENSMUST00000213401 Scn10a protein_coding Interval_41338 chr12 112924259 112924484 + 0 NA intron (ENSMUSG00000002799.6, intron 2 of 25) protein_coding-intron (ENSMUSG00000002799.6, intron 2 of 25) -3830 ENSMUSG00000098338.1 ENSMUSG00000098338 ENSMUST00000184711 Mir6941 miRNA Interval_54669 chr14 73142443 73143965 + 0 NA promoter-TSS (ENSMUSG00000022106.14) protein_coding-promoter-TSS (ENSMUSG00000022106.14) 341 ENSMUSG00000022106.14 ENSMUSG00000022106 ENSMUST00000170278 Rcbtb2 protein_coding Interval_62754 chr15 96647584 96647889 + 0 NA Intergenic Intergenic -5523 ENSMUSG00000023169.15 ENSMUSG00000023169 ENSMUST00000229253 Slc38a1 protein_coding Interval_51399 chr14 27221108 27221949 + 0 NA intron (ENSMUSG00000021895.10, intron 4 of 13) protein_coding-intron (ENSMUSG00000021895.10, intron 4 of 13) 11131 ENSMUSG00000114349.1 ENSMUSG00000114349 ENSMUST00000225776 Gm7591 processed_pseudogene Interval_27128 chr11 63171975 63172222 + 0 NA Intergenic Intergenic -1816 ENSMUSG00000085532.1 ENSMUSG00000085532 ENSMUST00000123420 B430319H21Rik lincRNA Interval_146329 chr7 45366647 45367849 + 0 NA promoter-TSS (ENSMUSG00000003863.18) protein_coding-promoter-TSS (ENSMUSG00000003863.18) -929 ENSMUSG00000110070.1 ENSMUSG00000110070 ENSMUST00000210360 Gm45619 lincRNA Interval_116548 chr4 115453888 115454155 + 0 NA promoter-TSS (ENSMUSG00000080142.2) processed_pseudogene-promoter-TSS (ENSMUSG00000080142.2) 95 ENSMUSG00000080142.2 ENSMUSG00000080142 ENSMUST00000116278 Gm12838 processed_pseudogene Interval_43715 chr13 35751933 35752299 + 0 NA intron (ENSMUSG00000059288.14, intron 1 of 6) protein_coding-intron (ENSMUSG00000059288.14, intron 3 of 9) -10696 ENSMUSG00000059288.14 ENSMUSG00000059288 ENSMUST00000226071 Cdyl protein_coding Interval_16888 chr10 69523225 69523506 + 0 NA intron (ENSMUSG00000069601.14, intron 2 of 42) protein_coding-intron (ENSMUSG00000069601.14, intron 2 of 2) 42996 ENSMUSG00000112729.1 ENSMUSG00000112729 ENSMUST00000220152 Gm46231 processed_pseudogene Interval_46593 chr13 67433640 67434965 + 0 NA intron (ENSMUSG00000069206.14, intron 3 of 4) protein_coding-intron (ENSMUSG00000069206.14, intron 3 of 4) -12894 ENSMUSG00000055560.8 ENSMUSG00000055560 ENSMUST00000224496 Zfp459 protein_coding Interval_81536 chr18 61540679 61540916 + 0 NA Intergenic Intergenic -4222 ENSMUSG00000045094.8 ENSMUSG00000045094 ENSMUST00000237557 Arhgef37 protein_coding Interval_83967 chr19 5845214 5847212 + 0 NA promoter-TSS (ENSMUSG00000092274.3) lincRNA-promoter-TSS (ENSMUSG00000092274.3) 590 ENSMUSG00000043488.5 ENSMUSG00000043488 ENSMUST00000135347 Frmd8os antisense Interval_174854 chrX 169927214 169927730 + 0 NA promoter-TSS (ENSMUSG00000035299.16) protein_coding-promoter-TSS (ENSMUSG00000035299.16) 521 ENSMUSG00000035299.16 ENSMUSG00000035299 ENSMUST00000079443 Mid1 protein_coding Interval_26434 chr11 57829282 57830537 + 0 NA intron (ENSMUSG00000037335.13, intron 2 of 2) protein_coding-intron (ENSMUSG00000037335.13, intron 1 of 1) 2909 ENSMUSG00000037335.13 ENSMUSG00000037335 ENSMUST00000108845 Hand1 protein_coding Interval_99496 chr2 162606571 162607378 + 0 NA intron (ENSMUSG00000053141.16, intron 1 of 29) protein_coding-intron (ENSMUSG00000053141.16, intron 1 of 30) -54189 ENSMUSG00000054457.5 ENSMUSG00000054457 ENSMUST00000145985 9430021M05Rik processed_transcript Interval_26943 chr11 61734048 61735110 + 0 NA intron (ENSMUSG00000020528.14, intron 9 of 10) protein_coding-intron (ENSMUSG00000020528.14, intron 10 of 11) -14633 ENSMUSG00000042371.12 ENSMUSG00000042371 ENSMUST00000148584 Slc5a10 protein_coding Interval_150935 chr7 116459001 116459318 + 0 NA Intergenic Intergenic 15584 ENSMUSG00000108461.1 ENSMUSG00000108461 ENSMUST00000206201 AV356131 bidirectional_promoter_lncRNA Interval_129139 chr5 117687489 117688572 + 0 NA intron (ENSMUSG00000061578.8, intron 9 of 20) protein_coding-intron (ENSMUSG00000061578.8, intron 9 of 20) 167331 ENSMUSG00000107199.1 ENSMUSG00000107199 ENSMUST00000201553 Gm42550 TEC Interval_10493 chr1 171305187 171305587 + 0 NA exon (ENSMUSG00000079137.3, exon 1 of 1) processed_pseudogene-exon (ENSMUSG00000079137.3, exon 1 of 1) 107 ENSMUSG00000079137.3 ENSMUSG00000079137 ENSMUST00000088784 Rpl27-ps1 processed_pseudogene Interval_95931 chr2 118511790 118513151 + 0 NA Intergenic Intergenic -28293 ENSMUSG00000084028.1 ENSMUSG00000084028 ENSMUST00000118018 Gm13983 processed_pseudogene Interval_99448 chr2 161196198 161197571 + 0 NA intron (ENSMUSG00000067745.4, intron 2 of 2) lincRNA-intron (ENSMUSG00000067745.4, intron 2 of 2) 10396 ENSMUSG00000085469.1 ENSMUSG00000085469 ENSMUST00000145204 Gm14242 lincRNA Interval_27921 chr11 70875193 70875905 + 0 NA intron (ENSMUSG00000020817.16, intron 2 of 4) protein_coding-intron (ENSMUSG00000020817.16, intron 2 of 17) -3879 ENSMUSG00000081968.1 ENSMUSG00000081968 ENSMUST00000119375 Rpl23a-ps2 processed_pseudogene Interval_140572 chr6 119674130 119674666 + 0 NA intron (ENSMUSG00000030172.15, intron 11 of 15) protein_coding-intron (ENSMUSG00000030172.15, intron 15 of 18) -52293 ENSMUSG00000030172.15 ENSMUSG00000030172 ENSMUST00000183741 Erc1 protein_coding Interval_119601 chr4 138664313 138664683 + 0 NA Intergenic Intergenic -57968 ENSMUSG00000028753.12 ENSMUSG00000028753 ENSMUST00000133319 Vwa5b1 protein_coding Interval_58616 chr15 36594739 36595036 + 0 NA TTS (ENSMUSG00000022283.15) protein_coding-TTS (ENSMUSG00000022283.15) 10579 ENSMUSG00000022283.15 ENSMUSG00000022283 ENSMUST00000226496 Pabpc1 protein_coding Interval_134229 chr6 23259814 23261646 + 0 NA Intergenic Intergenic 9597 ENSMUSG00000106775.1 ENSMUSG00000106775 ENSMUST00000202489 C130093G08Rik TEC Interval_52352 chr14 45364157 45365690 + 0 NA intron (ENSMUSG00000053205.9, intron 3 of 3) protein_coding-intron (ENSMUSG00000053205.9, intron 4 of 11) 13701 ENSMUSG00000053205.9 ENSMUSG00000053205 ENSMUST00000228321 Styx protein_coding Interval_150975 chr7 117090888 117091421 + 0 NA Intergenic Intergenic -138453 ENSMUSG00000108303.1 ENSMUSG00000108303 ENSMUST00000206031 Gm39075 lincRNA Interval_85565 chr19 28634799 28635858 + 0 NA intron (ENSMUSG00000052942.13, intron 2 of 10) protein_coding-intron (ENSMUSG00000052942.13, intron 2 of 9) -42900 ENSMUSG00000097735.7 ENSMUSG00000097735 ENSMUST00000181625 D930032P07Rik lincRNA Interval_87730 chr19 55490806 55492622 + 0 NA intron (ENSMUSG00000024983.10, intron 5 of 7) protein_coding-intron (ENSMUSG00000024983.10, intron 5 of 7) 175387 ENSMUSG00000024983.10 ENSMUSG00000024983 ENSMUST00000224396 Vti1a protein_coding Interval_135830 chr6 47635028 47635761 + 0 NA promoter-TSS (ENSMUSG00000108180.1) TEC-promoter-TSS (ENSMUSG00000108180.1) 97 ENSMUSG00000108180.1 ENSMUSG00000108180 ENSMUST00000204231 Gm44141 TEC Interval_135228 chr6 37668558 37669030 + 0 NA Intergenic Intergenic 18401 ENSMUSG00000107035.1 ENSMUSG00000107035 ENSMUST00000201305 Ybx1-ps2 processed_pseudogene Interval_159430 chr8 94579435 94579652 + 0 NA exon (ENSMUSG00000031774.8, exon 1 of 2) protein_coding-exon (ENSMUSG00000031774.8, exon 1 of 2) 22147 ENSMUSG00000031774.8 ENSMUSG00000031774 ENSMUST00000212429 Fam192a protein_coding Interval_133117 chr5 149970287 149970682 + 0 NA Intergenic Intergenic 32830 ENSMUSG00000107056.1 ENSMUSG00000107056 ENSMUST00000202470 Gm21048 processed_pseudogene Interval_78919 chr18 21593711 21594038 + 0 NA intron (ENSMUSG00000042514.11, intron 3 of 8) protein_coding-intron (ENSMUSG00000042514.11, intron 2 of 7) -57574 ENSMUSG00000043168.12 ENSMUSG00000043168 ENSMUST00000139804 4930426D05Rik antisense Interval_116547 chr4 115395951 115397131 + 0 NA Intergenic Intergenic -15083 ENSMUSG00000078597.2 ENSMUSG00000078597 ENSMUST00000094887 Cyp4a12b protein_coding Interval_67619 chr16 52892785 52892973 + 0 NA intron (ENSMUSG00000116689.1, intron 3 of 5) lincRNA-intron (ENSMUSG00000116689.1, intron 3 of 5) 54050 ENSMUSG00000077718.1 ENSMUSG00000077718 ENSMUST00000104530 Gm25723 snoRNA Interval_117971 chr4 127399788 127400821 + 0 NA Intergenic Intergenic 8494 ENSMUSG00000079998.2 ENSMUSG00000079998 ENSMUST00000116114 Gm12947 processed_pseudogene Interval_66287 chr16 32887598 32888675 + 0 NA exon (ENSMUSG00000022800.14, exon 3 of 10) protein_coding-exon (ENSMUSG00000022800.14, exon 3 of 10) 10329 ENSMUSG00000022800.14 ENSMUSG00000022800 ENSMUST00000127493 Fyttd1 protein_coding Interval_141962 chr6 136113340 136114782 + 0 NA intron (ENSMUSG00000030209.14, intron 1 of 1) protein_coding-intron (ENSMUSG00000030209.14, intron 2 of 13) -59000 ENSMUSG00000097496.1 ENSMUSG00000097496 ENSMUST00000181537 Gm26653 antisense Interval_148760 chr7 86152513 86152951 + 0 NA intron (ENSMUSG00000090436.2, intron 5 of 5) protein_coding-intron (ENSMUSG00000090436.2, intron 5 of 5) 19046 ENSMUSG00000090436.2 ENSMUSG00000090436 ENSMUST00000167830 Vmn2r75 protein_coding Interval_19408 chr10 99013825 99014151 + 0 NA promoter-TSS (ENSMUSG00000019943.10) protein_coding-promoter-TSS (ENSMUSG00000019943.10) 23108 ENSMUSG00000019943.10 ENSMUSG00000019943 ENSMUST00000218419 Atp2b1 protein_coding Interval_83268 chr18 83230209 83231086 + 0 NA Intergenic Intergenic 95237 ENSMUSG00000118333.1 ENSMUSG00000118333 ENSMUST00000236997 4921531P14Rik lincRNA Interval_17406 chr10 76405309 76405577 + 0 NA intron (ENSMUSG00000001151.10, intron 6 of 29) protein_coding-intron (ENSMUSG00000001151.10, intron 18 of 41) 11469 ENSMUSG00000001151.10 ENSMUSG00000001151 ENSMUST00000219701 Pcnt protein_coding Interval_57286 chr15 8429673 8430901 + 0 NA intron (ENSMUSG00000022141.7, intron 1 of 46) protein_coding-intron (ENSMUSG00000022141.7, intron 1 of 46) 14176 ENSMUSG00000022141.7 ENSMUSG00000022141 ENSMUST00000052965 Nipbl protein_coding Interval_172089 chrX 7306910 7307632 + 0 NA intron (ENSMUSG00000004317.14, intron 3 of 3) protein_coding-intron (ENSMUSG00000004317.14, intron 3 of 14) -58774 ENSMUSG00000070139.1 ENSMUSG00000070139 ENSMUST00000093630 Mir532 miRNA Interval_86369 chr19 39096550 39096945 + 0 NA Intergenic Intergenic -17163 ENSMUSG00000067229.3 ENSMUSG00000067229 ENSMUST00000146494 Cyp2c66 protein_coding Interval_31706 chr11 102352592 102353169 + 0 NA intron (ENSMUSG00000006574.15, intron 16 of 19) protein_coding-intron (ENSMUSG00000006574.15, intron 16 of 19) 13323 ENSMUSG00000006574.15 ENSMUSG00000006574 ENSMUST00000151050 Slc4a1 protein_coding Interval_23556 chr11 23355612 23356114 + 0 NA intron (ENSMUSG00000056342.16, intron 10 of 79) protein_coding-intron (ENSMUSG00000056342.16, intron 10 of 79) 48968 ENSMUSG00000056342.16 ENSMUSG00000056342 ENSMUST00000125701 Usp34 protein_coding Interval_44920 chr13 49762015 49762807 + 0 NA Intergenic Intergenic -1917 ENSMUSG00000113823.1 ENSMUSG00000113823 ENSMUST00000223010 Gm270 processed_pseudogene Interval_126288 chr5 86098491 86099204 + 0 NA intron (ENSMUSG00000029254.16, intron 8 of 8) protein_coding-intron (ENSMUSG00000029254.16, intron 7 of 7) 19081 ENSMUSG00000064859.1 ENSMUSG00000064859 ENSMUST00000082925 Gm24524 snRNA Interval_17479 chr10 77144956 77147130 + 0 NA intron (ENSMUSG00000001435.15, intron 2 of 41) protein_coding-intron (ENSMUSG00000001435.15, intron 2 of 41) 8943 ENSMUSG00000112612.1 ENSMUSG00000112612 ENSMUST00000218871 Gm7775 processed_pseudogene Interval_72811 chr17 32302612 32303127 + 0 NA TTS (ENSMUSG00000024045.6) protein_coding-TTS (ENSMUSG00000024045.6) 13252 ENSMUSG00000024045.6 ENSMUSG00000024045 ENSMUST00000235702 Akap8 protein_coding Interval_71002 chr17 17091692 17091904 + 0 NA Intergenic Intergenic 27685 ENSMUSG00000096696.1 ENSMUSG00000096696 ENSMUST00000127027 Zfp960 protein_coding Interval_43010 chr13 22988110 22988377 + 0 NA Intergenic Intergenic 8257 ENSMUSG00000079064.2 ENSMUSG00000079064 ENSMUST00000110449 Vmn1r-ps123 unprocessed_pseudogene Interval_58090 chr15 27800562 27801626 + 0 NA intron (ENSMUSG00000022263.10, intron 33 of 35) protein_coding-intron (ENSMUSG00000022263.10, intron 34 of 56) -55213 ENSMUSG00000115641.1 ENSMUSG00000115641 ENSMUST00000228765 Gm9891 TEC Interval_163419 chr9 21375039 21375278 + 0 NA intron (ENSMUSG00000032178.14, intron 1 of 20) protein_coding-intron (ENSMUSG00000032178.14, intron 1 of 19) -5974 ENSMUSG00000110915.1 ENSMUSG00000110915 ENSMUST00000217490 Gm36198 antisense Interval_162517 chr9 3551592 3551865 + 0 NA intron (ENSMUSG00000041624.10, intron 1 of 4) protein_coding-intron (ENSMUSG00000041624.10, intron 1 of 7) 18840 ENSMUSG00000041624.10 ENSMUSG00000041624 ENSMUST00000212705 Gucy1a2 protein_coding Interval_68019 chr16 63863354 63864955 + 0 NA promoter-TSS (ENSMUSG00000052504.7) protein_coding-promoter-TSS (ENSMUSG00000052504.7) 3 ENSMUSG00000052504.7 ENSMUSG00000052504 ENSMUST00000232370 Epha3 protein_coding Interval_26389 chr11 57566322 57567912 + 0 NA Intergenic Intergenic -5395 ENSMUSG00000086028.1 ENSMUSG00000086028 ENSMUST00000128521 Gm12243 lincRNA Interval_103456 chr3 41685566 41686180 + 0 NA intron (ENSMUSG00000059834.12, intron 4 of 6) protein_coding-intron (ENSMUSG00000059834.12, intron 9 of 20) -36623 ENSMUSG00000102436.1 ENSMUSG00000102436 ENSMUST00000193690 Gm38047 TEC Interval_3139 chr1 53924836 53926068 + 0 NA exon (ENSMUSG00000042807.15, exon 9 of 29) protein_coding-exon (ENSMUSG00000042807.15, exon 9 of 29) -38511 ENSMUSG00000087949.1 ENSMUSG00000087949 ENSMUST00000157324 Gm24251 snRNA Interval_167088 chr9 65177976 65179236 + 0 NA intron (ENSMUSG00000032394.6, intron 5 of 13) protein_coding-intron (ENSMUSG00000032394.6, intron 5 of 13) -16747 ENSMUSG00000032392.11 ENSMUSG00000032392 ENSMUST00000213766 Parp16 protein_coding Interval_55322 chr14 82757069 82757844 + 0 NA Intergenic Intergenic -12935 ENSMUSG00000115051.1 ENSMUSG00000115051 ENSMUST00000227503 Gm49049 processed_pseudogene Interval_159138 chr8 90964419 90965181 + 0 NA intron (ENSMUSG00000056608.14, intron 3 of 4) protein_coding-intron (ENSMUSG00000056608.14, intron 4 of 39) -56384 ENSMUSG00000074171.2 ENSMUSG00000074171 ENSMUST00000098517 Gm6658 TEC Interval_65594 chr16 23908441 23909168 + 0 NA Intergenic Intergenic -17846 ENSMUSG00000004366.4 ENSMUSG00000004366 ENSMUST00000004480 Sst protein_coding Interval_87633 chr19 53841877 53842357 + 0 NA intron (ENSMUSG00000043639.15, intron 8 of 13) protein_coding-intron (ENSMUSG00000043639.15, intron 8 of 13) -16989 ENSMUSG00000089679.1 ENSMUSG00000089679 ENSMUST00000162724 Gm16299 antisense Interval_7288 chr1 128444223 128444593 + 0 NA Intergenic Intergenic -45632 ENSMUSG00000088196.1 ENSMUSG00000088196 ENSMUST00000157571 Gm23902 snoRNA Interval_60907 chr15 77775234 77776178 + 0 NA intron (ENSMUSG00000022443.17, intron 3 of 5) protein_coding-intron (ENSMUSG00000022443.17, intron 21 of 40) 5427 ENSMUSG00000022443.17 ENSMUSG00000022443 ENSMUST00000134878 Myh9 protein_coding Interval_10446 chr1 170919855 170920278 + 0 NA TTS (ENSMUSG00000038421.13) protein_coding-TTS (ENSMUSG00000038421.13) 5578 ENSMUSG00000089838.1 ENSMUSG00000089838 ENSMUST00000159266 Gm2962 processed_pseudogene Interval_8007 chr1 135183153 135184438 + 0 NA Intergenic Intergenic -16114 ENSMUSG00000026424.8 ENSMUSG00000026424 ENSMUST00000027682 Gpr37l1 protein_coding Interval_145248 chr7 30908375 30909579 + 0 NA TTS (ENSMUSG00000036634.15) protein_coding-TTS (ENSMUSG00000036634.15) 5868 ENSMUSG00000036634.15 ENSMUSG00000036634 ENSMUST00000191486 Mag protein_coding Interval_98962 chr2 156352961 156354425 + 0 NA intron (ENSMUSG00000038085.13, intron 9 of 12) protein_coding-intron (ENSMUSG00000038085.13, intron 9 of 12) -5853 ENSMUSG00000082321.3 ENSMUSG00000082321 ENSMUST00000122112 Gm14253 processed_pseudogene Interval_160839 chr8 113532689 113533535 + 0 NA Intergenic Intergenic -4441 ENSMUSG00000088258.1 ENSMUSG00000088258 ENSMUST00000157633 Gm24291 snRNA Interval_169872 chr9 102668285 102669773 + 0 NA Intergenic Intergenic -23856 ENSMUSG00000099491.1 ENSMUSG00000099491 ENSMUST00000185478 4930533D04Rik lincRNA Interval_113356 chr4 53779010 53780514 + 0 NA promoter-TSS (ENSMUSG00000028417.3) protein_coding-promoter-TSS (ENSMUSG00000028417.3) 57 ENSMUSG00000028417.3 ENSMUSG00000028417 ENSMUST00000030124 Tal2 protein_coding Interval_116931 chr4 118289791 118291528 + 0 NA intron (ENSMUSG00000033295.14, intron 1 of 9) protein_coding-intron (ENSMUSG00000033295.14, intron 1 of 32) 615 ENSMUSG00000033295.14 ENSMUSG00000033295 ENSMUST00000222620 Ptprf protein_coding Interval_27226 chr11 64400605 64400938 + 0 NA Intergenic Intergenic -34561 ENSMUSG00000047759.6 ENSMUSG00000047759 ENSMUST00000058652 Hs3st3a1 protein_coding Interval_133063 chr5 149589208 149590334 + 0 NA intron (ENSMUSG00000029658.17, intron 15 of 22) protein_coding-intron (ENSMUSG00000029658.17, intron 15 of 22) 46567 ENSMUSG00000029657.15 ENSMUSG00000029657 ENSMUST00000201666 Hsph1 protein_coding Interval_50366 chr14 12107259 12109409 + 0 NA intron (ENSMUSG00000021745.14, intron 2 of 3) protein_coding-intron (ENSMUSG00000021745.14, intron 6 of 29) 44250 ENSMUSG00000114246.1 ENSMUSG00000114246 ENSMUST00000225204 Gm48603 TEC Interval_89193 chr2 17973444 17974772 + 0 NA Intergenic Intergenic 22850 ENSMUSG00000062651.4 ENSMUSG00000062651 ENSMUST00000105001 H2al2a protein_coding Interval_964 chr1 13506595 13508002 + 0 NA Intergenic Intergenic 82577 ENSMUSG00000025935.10 ENSMUSG00000025935 ENSMUST00000188377 Tram1 protein_coding Interval_24092 chr11 30182686 30183625 + 0 NA intron (ENSMUSG00000020315.18, intron 2 of 30) protein_coding-intron (ENSMUSG00000020315.18, intron 2 of 35) 76761 ENSMUSG00000101872.1 ENSMUSG00000101872 ENSMUST00000186216 Gm29237 antisense Interval_160891 chr8 114686176 114687548 + 0 NA intron (ENSMUSG00000004637.15, intron 6 of 8) protein_coding-intron (ENSMUSG00000004637.15, intron 6 of 8) 21144 ENSMUSG00000089797.1 ENSMUSG00000089797 ENSMUST00000161914 Gm16118 antisense Interval_145286 chr7 31144792 31145473 + 0 NA intron (ENSMUSG00000001248.15, intron 2 of 5) protein_coding-intron (ENSMUSG00000001248.15, intron 1 of 18) -4396 ENSMUSG00000097149.1 ENSMUSG00000097149 ENSMUST00000181958 G630030J09Rik antisense Interval_140291 chr6 116198309 116198796 + 0 NA TTS (ENSMUSG00000108030.1) bidirectional_promoter_lncRNA-TTS (ENSMUSG00000108030.1) -2694 ENSMUSG00000082474.3 ENSMUSG00000082474 ENSMUST00000118191 Gm8213 processed_pseudogene Interval_151343 chr7 121258601 121259785 + 0 NA exon (ENSMUSG00000108697.1, exon 1 of 1) TEC-exon (ENSMUSG00000108697.1, exon 1 of 1) 202 ENSMUSG00000108697.1 ENSMUSG00000108697 ENSMUST00000206668 4930486N12Rik TEC Interval_14492 chr10 34307413 34307845 + 0 NA intron (ENSMUSG00000039480.14, intron 10 of 10) protein_coding-intron (ENSMUSG00000039480.14, intron 11 of 11) 8373 ENSMUSG00000039485.8 ENSMUSG00000039485 ENSMUST00000213791 Tspyl4 protein_coding Interval_81294 chr18 57590401 57590766 + 0 NA intron (ENSMUSG00000058925.11, intron 3 of 5) protein_coding-intron (ENSMUSG00000058925.11, intron 3 of 6) -38704 ENSMUSG00000086607.7 ENSMUSG00000086607 ENSMUST00000151209 4930511M06Rik antisense Interval_111146 chr4 13131693 13132079 + 0 NA Intergenic Intergenic 55746 ENSMUSG00000086227.1 ENSMUSG00000086227 ENSMUST00000139614 Gm11820 lincRNA Interval_104692 chr3 69488473 69488783 + 0 NA intron (ENSMUSG00000027784.10, intron 1 of 3) protein_coding-intron (ENSMUSG00000027784.10, intron 1 of 3) -8585 ENSMUSG00000027784.10 ENSMUSG00000027784 ENSMUST00000128637 Ppm1l protein_coding Interval_3647 chr1 60356016 60356325 + 0 NA intron (ENSMUSG00000049439.13, intron 3 of 11) protein_coding-intron (ENSMUSG00000049439.13, intron 4 of 12) 3051 ENSMUSG00000103822.1 ENSMUSG00000103822 ENSMUST00000191764 6030460B20Rik TEC Interval_10408 chr1 170531235 170531571 + 0 NA intron (ENSMUSG00000038473.14, intron 1 of 7) protein_coding-intron (ENSMUSG00000038473.14, intron 1 of 3) -99518 ENSMUSG00000102193.1 ENSMUSG00000102193 ENSMUST00000194441 Gm7299 processed_pseudogene Interval_102740 chr3 30706000 30706259 + 0 NA Intergenic Intergenic -6361 ENSMUSG00000074653.10 ENSMUSG00000074653 ENSMUST00000130731 Lrrc31 protein_coding Interval_142490 chr6 142832869 142833207 + 0 NA exon (ENSMUSG00000072683.3, exon 7 of 7) processed_transcript-exon (ENSMUSG00000072683.3, exon 7 of 7) 18653 ENSMUSG00000072683.3 ENSMUSG00000072683 ENSMUST00000159599 Gm7457 processed_transcript Interval_110763 chr4 8125628 8126970 + 0 NA Intergenic Intergenic 7679 ENSMUSG00000083068.1 ENSMUSG00000083068 ENSMUST00000120050 Gm11800 processed_pseudogene Interval_168689 chr9 85939581 85939800 + 0 NA Intergenic Intergenic 3510 ENSMUSG00000110946.1 ENSMUSG00000110946 ENSMUST00000213921 Gm47604 lincRNA Interval_70355 chr17 8929409 8929807 + 0 NA intron (ENSMUSG00000023868.17, intron 4 of 20) protein_coding-intron (ENSMUSG00000023868.17, intron 4 of 21) -58734 ENSMUSG00000023873.13 ENSMUSG00000023873 ENSMUST00000136954 1700010I14Rik protein_coding Interval_89296 chr2 18977524 18977952 + 0 NA intron (ENSMUSG00000026737.12, intron 1 of 9) protein_coding-intron (ENSMUSG00000026737.12, intron 1 of 9) -20605 ENSMUSG00000026736.2 ENSMUSG00000026736 ENSMUST00000238778 4930426L09Rik bidirectional_promoter_lncRNA Interval_25736 chr11 51225880 51226812 + 0 NA intron (ENSMUSG00000061469.3, intron 1 of 5) protein_coding-intron (ENSMUSG00000061469.3, intron 1 of 5) 5873 ENSMUSG00000061469.3 ENSMUSG00000061469 ENSMUST00000074198 Gm12569 protein_coding Interval_50918 chr14 20758915 20759325 + 0 NA intron (ENSMUSG00000021820.18, intron 5 of 10) protein_coding-intron (ENSMUSG00000021820.18, intron 12 of 20) -28802 ENSMUSG00000039308.6 ENSMUSG00000039308 ENSMUST00000225320 Ndst2 protein_coding Interval_42013 chr13 6533953 6534154 + 0 NA Intergenic Intergenic 3458 ENSMUSG00000114195.1 ENSMUSG00000114195 ENSMUST00000221776 2900042G08Rik TEC Interval_110566 chr4 3945883 3946370 + 0 NA promoter-TSS (ENSMUSG00000042198.12) protein_coding-promoter-TSS (ENSMUSG00000042198.12) -682 ENSMUSG00000042198.12 ENSMUSG00000042198 ENSMUST00000151519 Chchd7 protein_coding Interval_85510 chr19 27717981 27719301 + 0 NA Intergenic Intergenic -14634 ENSMUSG00000088266.1 ENSMUSG00000088266 ENSMUST00000157641 Gm24782 snoRNA Interval_83261 chr18 83068747 83068966 + 0 NA intron (ENSMUSG00000118094.1, intron 4 of 6) processed_transcript-intron (ENSMUSG00000118094.1, intron 4 of 6) 39004 ENSMUSG00000100430.2 ENSMUSG00000100430 ENSMUST00000236396 1700095A13Rik lincRNA Interval_150438 chr7 110638561 110639341 + 0 NA intron (ENSMUSG00000099803.1, intron 1 of 2) antisense-intron (ENSMUSG00000099803.1, intron 1 of 2) 407 ENSMUSG00000099803.1 ENSMUSG00000099803 ENSMUST00000186888 Gm28863 antisense Interval_86117 chr19 36857873 36858150 + 0 NA intron (ENSMUSG00000024811.11, intron 1 of 5) protein_coding-intron (ENSMUSG00000024811.11, intron 8 of 26) 8640 ENSMUSG00000024811.11 ENSMUSG00000024811 ENSMUST00000168654 Tnks2 protein_coding Interval_150400 chr7 110156593 110157687 + 0 NA Intergenic Intergenic 35094 ENSMUSG00000031016.9 ENSMUSG00000031016 ENSMUST00000033326 Wee1 protein_coding Interval_135843 chr6 47865700 47866941 + 0 NA exon (ENSMUSG00000062519.13, exon 6 of 6) protein_coding-exon (ENSMUSG00000062519.13, exon 6 of 6) -11336 ENSMUSG00000025821.9 ENSMUSG00000025821 ENSMUST00000125957 Zfp282 protein_coding Interval_50732 chr14 18678094 18678848 + 0 NA intron (ENSMUSG00000058317.12, intron 4 of 4) protein_coding-intron (ENSMUSG00000058317.12, intron 2 of 4) -133339 ENSMUSG00000114529.1 ENSMUSG00000114529 ENSMUST00000224515 Gm4939 processed_pseudogene Interval_39793 chr12 98387945 98388306 + 0 NA Intergenic Intergenic 60209 ENSMUSG00000113927.1 ENSMUSG00000113927 ENSMUST00000222069 5330409N07Rik TEC Interval_84856 chr19 17568187 17568397 + 0 NA exon (ENSMUSG00000024713.16, exon 17 of 38) protein_coding-exon (ENSMUSG00000024713.16, exon 17 of 38) -124471 ENSMUSG00000118270.1 ENSMUSG00000118270 ENSMUST00000237894 Gm17819 processed_pseudogene Interval_173099 chrX 71622212 71622788 + 0 NA Intergenic Intergenic -41466 ENSMUSG00000056380.13 ENSMUSG00000056380 ENSMUST00000131554 Gpr50 protein_coding Interval_42251 chr13 11004902 11006194 + 0 NA Intergenic Intergenic 31125 ENSMUSG00000113673.1 ENSMUSG00000113673 ENSMUST00000221075 Gm47486 lincRNA Interval_156789 chr8 59880750 59881200 + 0 NA Intergenic Intergenic 55326 ENSMUSG00000110406.1 ENSMUSG00000110406 ENSMUST00000209438 4930470O06Rik lincRNA Interval_55692 chr14 99069500 99070059 + 0 NA intron (ENSMUSG00000022070.7, intron 11 of 12) protein_coding-intron (ENSMUSG00000022070.7, intron 10 of 11) 8904 ENSMUSG00000033166.11 ENSMUSG00000033166 ENSMUST00000227001 Dis3 protein_coding Interval_117151 chr4 120079459 120079730 + 0 NA intron (ENSMUSG00000115115.1, intron 1 of 1) protein_coding-intron (ENSMUSG00000028634.17, intron 3 of 8) 14598 ENSMUSG00000115115.1 ENSMUSG00000115115 ENSMUST00000226560 AL607142.1 protein_coding Interval_62899 chr15 97789969 97790354 + 0 NA TTS (ENSMUSG00000081534.3) protein_coding-TTS (ENSMUSG00000081534.3) 11641 ENSMUSG00000081534.3 ENSMUSG00000081534 ENSMUST00000229084 Slc48a1 protein_coding Interval_152576 chr7 134754645 134755119 + 0 NA intron (ENSMUSG00000058325.6, intron 11 of 20) protein_coding-intron (ENSMUSG00000058325.6, intron 11 of 51) 84195 ENSMUSG00000058325.6 ENSMUSG00000058325 ENSMUST00000210121 Dock1 protein_coding Interval_39787 chr12 98326242 98326498 + 0 NA Intergenic Intergenic -46709 ENSMUSG00000112510.1 ENSMUSG00000112510 ENSMUST00000218404 Gm47566 antisense Interval_15767 chr10 56360743 56361030 + 0 NA Intergenic Intergenic -5812 ENSMUSG00000071303.4 ENSMUSG00000071303 ENSMUST00000172445 Rps8-ps1 processed_pseudogene Interval_158 JH584304.1 18852 22697 + 0 NA NA NA NA NA Interval_158510 chr8 84177512 84177790 + 0 NA intron (ENSMUSG00000056155.6, intron 1 of 1) protein_coding-intron (ENSMUSG00000056155.6, intron 1 of 1) 1136 ENSMUSG00000076338.1 ENSMUSG00000076338 ENSMUST00000102383 Mir181d miRNA Interval_955 chr1 13426491 13427569 + 0 NA Intergenic Intergenic -19375 ENSMUSG00000101171.1 ENSMUSG00000101171 ENSMUST00000187246 Gm7593 processed_pseudogene Interval_21762 chr11 4212863 4213291 + 0 NA intron (ENSMUSG00000034412.13, intron 6 of 8) protein_coding-intron (ENSMUSG00000034412.13, intron 6 of 8) -5148 ENSMUSG00000020424.3 ENSMUSG00000020424 ENSMUST00000020699 Castor1 protein_coding Interval_92455 chr2 59817606 59817895 + 0 NA intron (ENSMUSG00000035168.16, intron 17 of 25) protein_coding-intron (ENSMUSG00000035168.16, intron 18 of 26) 11682 ENSMUSG00000035168.16 ENSMUSG00000035168 ENSMUST00000147650 Tanc1 protein_coding Interval_30047 chr11 88876679 88877794 + 0 NA intron (ENSMUSG00000092399.1, intron 3 of 4) antisense-intron (ENSMUSG00000092399.1, intron 3 of 4) 25632 ENSMUSG00000092399.1 ENSMUSG00000092399 ENSMUST00000173677 4930556N13Rik antisense Interval_60126 chr15 65940605 65940792 + 0 NA intron (ENSMUSG00000072511.3, intron 11 of 17) protein_coding-intron (ENSMUSG00000072511.3, intron 11 of 16) -11765 ENSMUSG00000092454.1 ENSMUSG00000092454 ENSMUST00000173338 Gm2991 processed_pseudogene Interval_58140 chr15 28654177 28654512 + 0 NA Intergenic Intergenic 65742 ENSMUSG00000115795.1 ENSMUSG00000115795 ENSMUST00000227687 Gm8484 processed_pseudogene Interval_165111 chr9 44622909 44623368 + 0 NA intron (ENSMUSG00000032097.10, intron 4 of 13) protein_coding-intron (ENSMUSG00000032097.10, intron 4 of 13) 4885 ENSMUSG00000111264.1 ENSMUSG00000111264 ENSMUST00000215131 E030022I16Rik TEC Interval_81016 chr18 52956217 52956989 + 0 NA Intergenic Intergenic 4054 ENSMUSG00000118195.1 ENSMUSG00000118195 ENSMUST00000235787 Gm8572 processed_pseudogene Interval_12845 chr10 6305272 6305636 + 0 NA Intergenic Intergenic -62222 ENSMUSG00000112179.1 ENSMUSG00000112179 ENSMUST00000219296 Gm3213 processed_pseudogene Interval_13170 chr10 12785233 12785611 + 0 NA intron (ENSMUSG00000019820.11, intron 2 of 17) protein_coding-intron (ENSMUSG00000019820.11, intron 1 of 73) 8552 ENSMUSG00000088516.1 ENSMUSG00000088516 ENSMUST00000157891 Gm23044 snRNA Interval_105455 chr3 86768958 86769424 + 0 NA exon (ENSMUSG00000104108.1, exon 2 of 2) antisense-exon (ENSMUSG00000104108.1, exon 2 of 2) 9462 ENSMUSG00000104108.1 ENSMUSG00000104108 ENSMUST00000194490 Gm37876 antisense Interval_153088 chr7 141278439 141279659 + 0 NA promoter-TSS (ENSMUSG00000038580.13) protein_coding-promoter-TSS (ENSMUSG00000038580.13) 82 ENSMUSG00000038580.13 ENSMUSG00000038580 ENSMUST00000167790 Sct protein_coding Interval_86886 chr19 44642754 44643096 + 0 NA intron (ENSMUSG00000117911.1, intron 6 of 7) lincRNA-intron (ENSMUSG00000117911.1, intron 5 of 6) 28163 ENSMUSG00000117911.1 ENSMUSG00000117911 ENSMUST00000236677 Gm35460 lincRNA Interval_116508 chr4 114886160 114886869 + 0 NA intron (ENSMUSG00000085323.1, intron 1 of 1) antisense-intron (ENSMUSG00000085323.1, intron 1 of 1) 16345 ENSMUSG00000085323.1 ENSMUSG00000085323 ENSMUST00000155499 9130410C08Rik antisense Interval_86646 chr19 42268289 42268827 + 0 NA exon (ENSMUSG00000042532.14, exon 5 of 5) protein_coding-exon (ENSMUSG00000042532.14, exon 5 of 5) -6406 ENSMUSG00000076323.1 ENSMUSG00000076323 ENSMUST00000102368 Gm26339 miRNA Interval_13854 chr10 23937756 23938451 + 0 NA promoter-TSS (ENSMUSG00000059763.4) protein_coding-promoter-TSS (ENSMUSG00000059763.4) -469 ENSMUSG00000059763.4 ENSMUSG00000059763 ENSMUST00000079134 Taar2 protein_coding Interval_52070 chr14 35093493 35094258 + 0 NA intron (ENSMUSG00000041078.7, intron 4 of 15) protein_coding-intron (ENSMUSG00000041078.7, intron 4 of 15) 125563 ENSMUSG00000115826.1 ENSMUSG00000115826 ENSMUST00000227262 Gm49034 processed_pseudogene Interval_11095 chr1 179330724 179331128 + 0 NA intron (ENSMUSG00000055067.15, intron 5 of 11) protein_coding-intron (ENSMUSG00000055067.15, intron 5 of 11) 187079 ENSMUSG00000055067.15 ENSMUSG00000055067 ENSMUST00000194237 Smyd3 protein_coding Interval_145673 chr7 37213161 37214640 + 0 NA Intergenic Intergenic 73359 ENSMUSG00000100905.1 ENSMUSG00000100905 ENSMUST00000189179 Gm28075 lincRNA Interval_143988 chr7 18792217 18792960 + 0 NA exon (ENSMUSG00000004542.15, exon 4 of 5) protein_coding-exon (ENSMUSG00000004542.15, exon 4 of 5) 5922 ENSMUSG00000004542.15 ENSMUSG00000004542 ENSMUST00000182916 Psg19 protein_coding Interval_121685 chr5 5274252 5276176 + 0 NA intron (ENSMUSG00000028926.15, intron 1 of 2) protein_coding-intron (ENSMUSG00000028926.15, intron 2 of 14) 31788 ENSMUSG00000106202.1 ENSMUSG00000106202 ENSMUST00000198021 Gm43727 sense_intronic Interval_28701 chr11 77825788 77826211 + 0 NA intron (ENSMUSG00000000631.20, intron 16 of 41) protein_coding-intron (ENSMUSG00000000631.20, intron 14 of 39) 24649 ENSMUSG00000000631.20 ENSMUSG00000000631 ENSMUST00000142571 Myo18a protein_coding Interval_42289 chr13 11829690 11830015 + 0 NA promoter-TSS (ENSMUSG00000021313.16) protein_coding-promoter-TSS (ENSMUSG00000021313.16) -8118 ENSMUSG00000113269.1 ENSMUSG00000113269 ENSMUST00000221204 Gm47494 TEC Interval_139150 chr6 96296782 96297416 + 0 NA intron (ENSMUSG00000059187.12, intron 2 of 4) protein_coding-intron (ENSMUSG00000059187.12, intron 1 of 3) -130856 ENSMUSG00000072878.4 ENSMUSG00000072878 ENSMUST00000090061 1700123L14Rik protein_coding Interval_34060 chr11 120242371 120242985 + 0 NA intron (ENSMUSG00000039741.15, intron 2 of 27) protein_coding-intron (ENSMUSG00000039741.15, intron 2 of 27) -6556 ENSMUSG00000085501.1 ENSMUSG00000085501 ENSMUST00000136542 Gm11772 antisense Interval_99494 chr2 162568691 162568944 + 0 NA intron (ENSMUSG00000053141.16, intron 1 of 29) protein_coding-intron (ENSMUSG00000053141.16, intron 1 of 30) -92346 ENSMUSG00000054457.5 ENSMUSG00000054457 ENSMUST00000145985 9430021M05Rik processed_transcript Interval_59273 chr15 50653586 50653961 + 0 NA TTS (ENSMUSG00000038679.16) protein_coding-TTS (ENSMUSG00000038679.16) 235341 ENSMUSG00000084458.1 ENSMUSG00000084458 ENSMUST00000122509 Mir1907 miRNA Interval_166325 chr9 58344609 58345552 + 0 NA Intergenic Intergenic 25289 ENSMUSG00000036244.5 ENSMUSG00000036244 ENSMUST00000213847 Tbc1d21 protein_coding Interval_5418 chr1 88638677 88640504 + 0 NA Intergenic Intergenic -13495 ENSMUSG00000104057.1 ENSMUSG00000104057 ENSMUST00000194311 Gm38130 TEC Interval_171813 chr9 121403135 121404355 + 0 NA exon (ENSMUSG00000032536.12, exon 1 of 7) protein_coding-exon (ENSMUSG00000032536.12, exon 1 of 7) 57189 ENSMUSG00000110738.1 ENSMUSG00000110738 ENSMUST00000214815 Gm47092 TEC Interval_44161 chr13 41335986 41336246 + 0 NA intron (ENSMUSG00000021365.15, intron 2 of 3) protein_coding-intron (ENSMUSG00000021365.15, intron 3 of 7) -23855 ENSMUSG00000097373.1 ENSMUSG00000097373 ENSMUST00000180728 Gm26877 antisense Interval_99232 chr2 158281497 158282278 + 0 NA intron (ENSMUSG00000052922.9, intron 13 of 14) protein_coding-intron (ENSMUSG00000052922.9, intron 13 of 14) 23793 ENSMUSG00000052922.9 ENSMUSG00000052922 ENSMUST00000065039 Bpi protein_coding Interval_64823 chr16 16197096 16198811 + 0 NA Intergenic Intergenic -15365 ENSMUSG00000041957.15 ENSMUSG00000041957 ENSMUST00000039408 Pkp2 protein_coding Interval_105229 chr3 84012921 84014070 + 0 NA intron (ENSMUSG00000033767.14, intron 3 of 33) protein_coding-intron (ENSMUSG00000033767.14, intron 3 of 33) 49957 ENSMUSG00000103261.1 ENSMUSG00000103261 ENSMUST00000192340 Gm36981 TEC Interval_146825 chr7 52567638 52568137 + 0 NA Intergenic Intergenic 156434 ENSMUSG00000109099.1 ENSMUSG00000109099 ENSMUST00000208144 Gm20074 processed_pseudogene Interval_65521 chr16 23055538 23056163 + 0 NA Intergenic Intergenic -2015 ENSMUSG00000022875.18 ENSMUSG00000022875 ENSMUST00000089902 Kng1 protein_coding Interval_92476 chr2 60020883 60022257 + 0 NA intron (ENSMUSG00000026987.16, intron 1 of 34) protein_coding-intron (ENSMUSG00000026987.16, intron 1 of 34) -15571 ENSMUSG00000085975.1 ENSMUSG00000085975 ENSMUST00000153675 Gm13572 lincRNA Interval_23994 chr11 29238208 29238734 + 0 NA intron (ENSMUSG00000020462.14, intron 3 of 6) protein_coding-intron (ENSMUSG00000020462.14, intron 3 of 9) 8597 ENSMUSG00000020462.14 ENSMUSG00000020462 ENSMUST00000127940 Cfap36 protein_coding Interval_167515 chr9 70191722 70192951 + 0 NA Intergenic Intergenic -15014 ENSMUSG00000032220.10 ENSMUSG00000032220 ENSMUST00000034745 Myo1e protein_coding Interval_115144 chr4 91399242 91401132 + 0 NA promoter-TSS (ENSMUSG00000008489.18) protein_coding-promoter-TSS (ENSMUSG00000008489.18) -26824 ENSMUSG00000098563.1 ENSMUSG00000098563 ENSMUST00000183406 Mir6402 miRNA Interval_13058 chr10 10740278 10740487 + 0 NA intron (ENSMUSG00000019828.13, intron 6 of 9) protein_coding-intron (ENSMUSG00000019828.13, intron 6 of 8) 9753 ENSMUSG00000112772.1 ENSMUSG00000112772 ENSMUST00000220033 Gm48400 processed_pseudogene Interval_131295 chr5 136224855 136225264 + 0 NA intron (ENSMUSG00000005057.13, intron 4 of 5) protein_coding-intron (ENSMUSG00000005057.13, intron 4 of 8) -2397 ENSMUSG00000005057.13 ENSMUSG00000005057 ENSMUST00000196245 Sh2b2 protein_coding Interval_16192 chr10 61343674 61344591 + 0 NA exon (ENSMUSG00000020092.9, exon 11 of 20) protein_coding-exon (ENSMUSG00000020092.9, exon 11 of 20) -1805 ENSMUSG00000020092.9 ENSMUSG00000020092 ENSMUST00000219132 Pald1 protein_coding Interval_129801 chr5 122431701 122432059 + 0 NA intron (ENSMUSG00000029466.11, intron 4 of 11) protein_coding-intron (ENSMUSG00000029466.11, intron 3 of 10) 7035 ENSMUSG00000079906.2 ENSMUSG00000079906 ENSMUST00000116022 Gm15846 processed_pseudogene Interval_71492 chr17 24131713 24135001 + 0 NA intron (ENSMUSG00000024122.16, intron 1 of 6) protein_coding-intron (ENSMUSG00000024122.16, intron 1 of 13) -12563 ENSMUSG00000024122.16 ENSMUSG00000024122 ENSMUST00000128997 Pdpk1 protein_coding Interval_93058 chr2 69868148 69868387 + 0 NA promoter-TSS (ENSMUSG00000068882.13) protein_coding-promoter-TSS (ENSMUSG00000068882.13) 3935 ENSMUSG00000089902.1 ENSMUSG00000089902 ENSMUST00000149283 Gm13625 processed_transcript Interval_64136 chr16 8671413 8672476 + 0 NA intron (ENSMUSG00000008393.9, intron 1 of 3) protein_coding-intron (ENSMUSG00000008393.9, intron 1 of 3) 211 ENSMUSG00000008393.9 ENSMUSG00000008393 ENSMUST00000008537 Carhsp1 protein_coding Interval_90765 chr2 32488327 32489390 + 0 NA exon (ENSMUSG00000103175.1, exon 1 of 1) TEC-exon (ENSMUSG00000103175.1, exon 1 of 1) 870 ENSMUSG00000103175.1 ENSMUSG00000103175 ENSMUST00000195599 Gm37169 TEC Interval_98445 chr2 152405800 152406786 + 0 NA Intergenic Intergenic -8230 ENSMUSG00000051817.8 ENSMUSG00000051817 ENSMUST00000063332 Sox12 protein_coding Interval_138380 chr6 87750608 87750920 + 0 NA intron (ENSMUSG00000068263.11, intron 4 of 7) protein_coding-intron (ENSMUSG00000068263.11, intron 4 of 7) 15440 ENSMUSG00000068262.4 ENSMUSG00000068262 ENSMUST00000089501 Gm5879 processed_pseudogene Interval_86631 chr19 42159727 42160655 + 0 NA intron (ENSMUSG00000117856.1, intron 1 of 1) processed_pseudogene-intron (ENSMUSG00000117856.1, intron 1 of 1) 522 ENSMUSG00000117856.1 ENSMUSG00000117856 ENSMUST00000235531 Gm6937 processed_pseudogene Interval_49724 chr13 114260861 114261248 + 0 NA Intergenic Intergenic -18414 ENSMUSG00000114655.1 ENSMUSG00000114655 ENSMUST00000225060 4631422I05Rik TEC Interval_102326 chr3 21937985 21938652 + 0 NA Intergenic Intergenic 60150 ENSMUSG00000106321.1 ENSMUSG00000106321 ENSMUST00000196313 Gm43674 lincRNA Interval_28583 chr11 76972313 76973884 + 0 NA promoter-TSS (ENSMUSG00000088913.1) snRNA-promoter-TSS (ENSMUSG00000088913.1) -988 ENSMUSG00000088913.1 ENSMUSG00000088913 ENSMUST00000158288 Gm22611 snRNA Interval_109970 chr3 152240856 152241080 + 0 NA intron (ENSMUSG00000039103.12, intron 3 of 3) protein_coding-intron (ENSMUSG00000039103.12, intron 10 of 12) 11835 ENSMUSG00000104621.1 ENSMUSG00000104621 ENSMUST00000197507 Gm43185 TEC Interval_149433 chr7 98480769 98481472 + 0 NA Intergenic Intergenic -8577 ENSMUSG00000090958.2 ENSMUSG00000090958 ENSMUST00000165205 Lrrc32 protein_coding Interval_145560 chr7 35625889 35626404 + 0 NA intron (ENSMUSG00000034867.16, intron 4 of 4) protein_coding-intron (ENSMUSG00000034867.16, intron 22 of 28) 6667 ENSMUSG00000034867.16 ENSMUSG00000034867 ENSMUST00000206632 Ankrd27 protein_coding Interval_129051 chr5 117099733 117100158 + 0 NA intron (ENSMUSG00000066900.11, intron 1 of 2) protein_coding-intron (ENSMUSG00000066900.11, intron 7 of 11) 4456 ENSMUSG00000066900.11 ENSMUSG00000066900 ENSMUST00000201287 Suds3 protein_coding Interval_170962 chr9 113319154 113319493 + 0 NA Intergenic Intergenic 31616 ENSMUSG00000111022.1 ENSMUSG00000111022 ENSMUST00000217623 Gm36367 lincRNA Interval_119501 chr4 137960246 137960615 + 0 NA intron (ENSMUSG00000057530.14, intron 18 of 19) protein_coding-intron (ENSMUSG00000057530.14, intron 18 of 19) -33083 ENSMUSG00000028760.16 ENSMUSG00000028760 ENSMUST00000148074 Eif4g3 protein_coding Interval_164302 chr9 35147080 35148317 + 0 NA intron (ENSMUSG00000032040.15, intron 2 of 6) protein_coding-intron (ENSMUSG00000032040.15, intron 2 of 5) 3062 ENSMUSG00000088056.1 ENSMUSG00000088056 ENSMUST00000157431 Gm24262 snoRNA Interval_27990 chr11 72024219 72024705 + 0 NA Intergenic Intergenic 1707 ENSMUSG00000080577.1 ENSMUSG00000080577 ENSMUST00000116927 Gm23226 snRNA Interval_156496 chr8 48740171 48741387 + 0 NA intron (ENSMUSG00000031561.16, intron 1 of 2) protein_coding-intron (ENSMUSG00000031561.16, intron 1 of 2) -102943 ENSMUSG00000100706.6 ENSMUSG00000100706 ENSMUST00000188936 Gm19744 processed_transcript Interval_173932 chrX 113171155 113171774 + 0 NA intron (ENSMUSG00000025531.14, intron 1 of 12) protein_coding-intron (ENSMUSG00000025531.14, intron 1 of 14) 55856 ENSMUSG00000081831.1 ENSMUSG00000081831 ENSMUST00000121476 Gm7405 processed_pseudogene Interval_22585 chr11 11948378 11949487 + 0 NA TTS (ENSMUSG00000020176.17) protein_coding-TTS (ENSMUSG00000020176.17) -35184 ENSMUSG00000087990.2 ENSMUSG00000087990 ENSMUST00000157365 Gm25058 scaRNA Interval_75756 chr17 71069261 71069456 + 0 NA intron (ENSMUSG00000024049.15, intron 13 of 17) protein_coding-intron (ENSMUSG00000024049.15, intron 13 of 36) 66725 ENSMUSG00000024049.15 ENSMUSG00000024049 ENSMUST00000233790 Myom1 protein_coding Interval_147191 chr7 64287207 64288147 + 0 NA promoter-TSS (ENSMUSG00000030522.14) protein_coding-promoter-TSS (ENSMUSG00000030522.14) 24 ENSMUSG00000030522.14 ENSMUSG00000030522 ENSMUST00000206680 Mtmr10 protein_coding Interval_115619 chr4 101431880 101432617 + 0 NA intron (ENSMUSG00000028527.18, intron 1 of 4) protein_coding-intron (ENSMUSG00000028527.18, intron 2 of 5) -14975 ENSMUSG00000028527.18 ENSMUSG00000028527 ENSMUST00000155749 Ak4 protein_coding Interval_58308 chr15 32198924 32199124 + 0 NA Intergenic Intergenic 21735 ENSMUSG00000045267.3 ENSMUSG00000045267 ENSMUST00000057633 Tas2r119 protein_coding Interval_135889 chr6 48443659 48445869 + 0 NA promoter-TSS (ENSMUSG00000068551.12) protein_coding-promoter-TSS (ENSMUSG00000068551.12) 594 ENSMUSG00000068551.12 ENSMUSG00000068551 ENSMUST00000140198 Zfp467 protein_coding Interval_142347 chr6 140743642 140743907 + 0 NA intron (ENSMUSG00000079264.1, intron 1 of 1) protein_coding-intron (ENSMUSG00000079264.1, intron 1 of 1) 3398 ENSMUSG00000080921.4 ENSMUSG00000080921 ENSMUST00000117356 Rpl38-ps2 processed_pseudogene Interval_143085 chr6 149151608 149151948 + 0 NA TTS (ENSMUSG00000039958.17) protein_coding-TTS (ENSMUSG00000039958.17) 10265 ENSMUSG00000039958.17 ENSMUSG00000039958 ENSMUST00000111551 Etfbkmt protein_coding Interval_124862 chr5 57551816 57552134 + 0 NA Intergenic Intergenic -56594 ENSMUSG00000051116.6 ENSMUSG00000051116 ENSMUST00000153583 Gm8121 processed_pseudogene Interval_90514 chr2 30890742 30891593 + 0 NA exon (ENSMUSG00000050737.13, exon 3 of 3) protein_coding-exon (ENSMUSG00000050737.13, exon 3 of 3) 33190 ENSMUSG00000084143.1 ENSMUSG00000084143 ENSMUST00000117436 Gm13400 processed_pseudogene Interval_21182 chr10 127090600 127092200 + 0 NA exon (ENSMUSG00000025422.10, exon 18 of 19) protein_coding-exon (ENSMUSG00000025422.10, exon 18 of 19) 16116 ENSMUSG00000025422.10 ENSMUSG00000025422 ENSMUST00000217941 Agap2 protein_coding Interval_40244 chr12 102719699 102720293 + 0 NA TTS (ENSMUSG00000098530.1) protein_coding-TTS (ENSMUSG00000098530.1) 7326 ENSMUSG00000100006.1 ENSMUSG00000100006 ENSMUST00000180187 Gm21971 lincRNA Interval_28536 chr11 76581263 76581522 + 0 NA intron (ENSMUSG00000017631.19, intron 1 of 22) protein_coding-intron (ENSMUSG00000017631.19, intron 1 of 3) -19927 ENSMUSG00000024205.7 ENSMUSG00000024205 ENSMUST00000136893 Rpl36-ps2 processed_pseudogene Interval_36503 chr12 46651127 46651482 + 0 NA Intergenic Intergenic 14405 ENSMUSG00000112174.1 ENSMUSG00000112174 ENSMUST00000217951 Gm48535 lincRNA Interval_5059 chr1 84733592 84734765 + 0 NA intron (ENSMUSG00000026219.14, intron 10 of 17) protein_coding-intron (ENSMUSG00000026219.14, intron 33 of 40) -5302 ENSMUSG00000026219.14 ENSMUSG00000026219 ENSMUST00000187818 Trip12 protein_coding Interval_117902 chr4 126960441 126961152 + 0 NA intron (ENSMUSG00000042446.16, intron 1 of 3) protein_coding-intron (ENSMUSG00000042446.16, intron 1 of 29) 7103 ENSMUSG00000042446.16 ENSMUSG00000042446 ENSMUST00000123597 Zmym4 protein_coding Interval_162969 chr9 13846482 13847446 + 0 NA TTS (ENSMUSG00000037808.13) protein_coding-TTS (ENSMUSG00000037808.13) 10087 ENSMUSG00000037808.13 ENSMUSG00000037808 ENSMUST00000213416 Fam76b protein_coding Interval_48792 chr13 103321157 103321879 + 0 NA intron (ENSMUSG00000034751.17, intron 1 of 3) protein_coding-intron (ENSMUSG00000034751.17, intron 1 of 4) -34734 ENSMUSG00000047643.5 ENSMUSG00000047643 ENSMUST00000052030 Gm5454 processed_pseudogene Interval_90662 chr2 31758706 31760414 + 0 NA promoter-TSS (ENSMUSG00000026842.16) protein_coding-promoter-TSS (ENSMUSG00000026842.16) 51020 ENSMUSG00000043102.2 ENSMUSG00000043102 ENSMUST00000057407 Qrfp protein_coding Interval_113950 chr4 61713653 61714627 + 0 NA Intergenic Intergenic 15299 ENSMUSG00000083304.1 ENSMUSG00000083304 ENSMUST00000121741 Mup-ps15 unprocessed_pseudogene Interval_42292 chr13 11865355 11866159 + 0 NA intron (ENSMUSG00000021313.16, intron 9 of 24) protein_coding-intron (ENSMUSG00000021313.16, intron 10 of 104) -44023 ENSMUSG00000113269.1 ENSMUSG00000113269 ENSMUST00000221204 Gm47494 TEC Interval_1381 chr1 21206291 21206859 + 0 NA Intergenic Intergenic -12000 ENSMUSG00000025933.15 ENSMUSG00000025933 ENSMUST00000027064 Tmem14a protein_coding Interval_78829 chr18 20856852 20857844 + 0 NA promoter-TSS (ENSMUSG00000033382.15) protein_coding-promoter-TSS (ENSMUSG00000033382.15) -12756 ENSMUSG00000088549.1 ENSMUSG00000088549 ENSMUST00000157924 Gm24959 snRNA Interval_6867 chr1 120212936 120213533 + 0 NA intron (ENSMUSG00000026389.16, intron 4 of 4) protein_coding-intron (ENSMUSG00000026389.16, intron 4 of 4) 52021 ENSMUSG00000026389.16 ENSMUSG00000026389 ENSMUST00000112643 Steap3 protein_coding Interval_113779 chr4 58545963 58546973 + 0 NA intron (ENSMUSG00000038668.14, intron 1 of 3) protein_coding-intron (ENSMUSG00000038668.14, intron 1 of 3) 1933 ENSMUSG00000038668.14 ENSMUSG00000038668 ENSMUST00000145361 Lpar1 protein_coding Interval_62008 chr15 85853969 85854370 + 0 NA intron (ENSMUSG00000035944.17, intron 13 of 13) protein_coding-intron (ENSMUSG00000035944.17, intron 12 of 12) -5777 ENSMUSG00000022385.11 ENSMUSG00000022385 ENSMUST00000231074 Gtse1 protein_coding Interval_48869 chr13 104177952 104179320 + 0 NA promoter-TSS (ENSMUSG00000021711.17) protein_coding-promoter-TSS (ENSMUSG00000021711.17) -197 ENSMUSG00000118537.1 ENSMUSG00000118537 ENSMUST00000133280 Shld3 protein_coding Interval_70811 chr17 14918262 14919189 + 0 NA intron (ENSMUSG00000046991.12, intron 10 of 24) protein_coding-intron (ENSMUSG00000046991.12, intron 9 of 22) -23240 ENSMUSG00000092577.1 ENSMUSG00000092577 ENSMUST00000172650 Gm7393 processed_pseudogene Interval_132973 chr5 149039744 149040384 + 0 NA Intergenic Intergenic -24251 ENSMUSG00000085971.4 ENSMUSG00000085971 ENSMUST00000202128 Gm15411 processed_transcript Interval_126079 chr5 77253966 77254822 + 0 NA Intergenic Intergenic -11802 ENSMUSG00000029249.15 ENSMUSG00000029249 ENSMUST00000113449 Rest protein_coding Interval_85328 chr19 24799858 24800457 + 0 NA intron (ENSMUSG00000041731.13, intron 6 of 10) protein_coding-intron (ENSMUSG00000041731.13, intron 6 of 10) -56039 ENSMUSG00000117934.1 ENSMUSG00000117934 ENSMUST00000235519 Gm50342 unprocessed_pseudogene Interval_68930 chr16 89286335 89286536 + 0 NA Intergenic Intergenic 80574 ENSMUSG00000091039.2 ENSMUSG00000091039 ENSMUST00000169954 Krtap20-2 protein_coding Interval_114412 chr4 75542985 75543468 + 0 NA Intergenic Intergenic 162466 ENSMUSG00000084026.1 ENSMUSG00000084026 ENSMUST00000120554 Gm11259 processed_pseudogene Interval_172391 chrX 17403973 17404855 + 0 NA Intergenic Intergenic 79099 ENSMUSG00000065242.1 ENSMUSG00000065242 ENSMUST00000083308 Gm22294 snRNA Interval_96413 chr2 122297782 122299151 + 0 NA promoter-TSS (ENSMUSG00000027225.7) protein_coding-promoter-TSS (ENSMUSG00000027225.7) -17 ENSMUSG00000068452.8 ENSMUSG00000068452 ENSMUST00000155820 Duox2 protein_coding Interval_69964 chr17 3551655 3552395 + 0 NA exon (ENSMUSG00000036983.7, exon 3 of 3) protein_coding-exon (ENSMUSG00000036983.7, exon 3 of 3) 5729 ENSMUSG00000036983.7 ENSMUSG00000036983 ENSMUST00000232051 Tfb1m protein_coding Interval_138666 chr6 90987775 90989512 + 0 NA promoter-TSS (ENSMUSG00000034312.15) protein_coding-promoter-TSS (ENSMUSG00000034312.15) 82824 ENSMUSG00000099662.1 ENSMUSG00000099662 ENSMUST00000117103 Ppp1r2-ps2 processed_pseudogene Interval_65779 chr16 28807395 28807612 + 0 NA Intergenic Intergenic 28864 ENSMUSG00000051065.9 ENSMUSG00000051065 ENSMUST00000232571 Mb21d2 protein_coding Interval_105380 chr3 85773255 85773922 + 0 NA intron (ENSMUSG00000051000.17, intron 2 of 11) protein_coding-intron (ENSMUSG00000051000.17, intron 2 of 11) -99600 ENSMUSG00000051000.17 ENSMUSG00000051000 ENSMUST00000094148 Fam160a1 protein_coding Interval_119590 chr4 138555476 138556084 + 0 NA Intergenic Intergenic 31949 ENSMUSG00000088589.1 ENSMUSG00000088589 ENSMUST00000157964 Gm22961 snRNA Interval_22531 chr11 11549390 11550146 + 0 NA Intergenic Intergenic -7653 ENSMUSG00000087452.1 ENSMUSG00000087452 ENSMUST00000146304 Gm11998 antisense Interval_26652 chr11 59482464 59483436 + 0 NA TTS (ENSMUSG00000083234.1) processed_pseudogene-TTS (ENSMUSG00000083234.1) 977 ENSMUSG00000083234.1 ENSMUSG00000083234 ENSMUST00000119915 Gm12262 processed_pseudogene Interval_24616 chr11 35294710 35295645 + 0 NA intron (ENSMUSG00000056427.10, intron 2 of 3) protein_coding-intron (ENSMUSG00000056427.10, intron 4 of 35) 28493 ENSMUSG00000082309.3 ENSMUSG00000082309 ENSMUST00000120348 Gm12123 processed_pseudogene Interval_14042 chr10 25927960 25929672 + 0 NA intron (ENSMUSG00000049420.9, intron 2 of 2) protein_coding-intron (ENSMUSG00000049420.9, intron 2 of 2) 29537 ENSMUSG00000112324.1 ENSMUSG00000112324 ENSMUST00000219283 Gm47939 lincRNA Interval_97281 chr2 132939134 132940158 + 0 NA intron (ENSMUSG00000027356.8, intron 1 of 1) protein_coding-intron (ENSMUSG00000027356.8, intron 2 of 14) 2451 ENSMUSG00000027356.8 ENSMUSG00000027356 ENSMUST00000143981 Fermt1 protein_coding Interval_98898 chr2 155879128 155879335 + 0 NA intron (ENSMUSG00000005882.18, intron 7 of 7) protein_coding-intron (ENSMUSG00000005882.18, intron 4 of 6) -44377 ENSMUSG00000074647.4 ENSMUSG00000074647 ENSMUST00000239423 Fam83c protein_coding Interval_12225 chr1 190948596 190949403 + 0 NA exon (ENSMUSG00000037568.12, exon 8 of 8) protein_coding-exon (ENSMUSG00000037568.12, exon 8 of 8) 11747 ENSMUSG00000026634.16 ENSMUSG00000026634 ENSMUST00000146048 Angel2 protein_coding Interval_18188 chr10 83513137 83515688 + 0 NA promoter-TSS (ENSMUSG00000020256.14) protein_coding-promoter-TSS (ENSMUSG00000020256.14) -18395 ENSMUSG00000020256.14 ENSMUSG00000020256 ENSMUST00000125193 Aldh1l2 protein_coding Interval_146069 chr7 43646622 43647592 + 0 NA intron (ENSMUSG00000030472.9, intron 5 of 5) protein_coding-intron (ENSMUSG00000030472.9, intron 5 of 5) 12246 ENSMUSG00000030474.9 ENSMUSG00000030474 ENSMUST00000206421 Siglece protein_coding Interval_108063 chr3 121305960 121306138 + 0 NA intron (ENSMUSG00000039887.11, intron 2 of 2) protein_coding-intron (ENSMUSG00000039887.11, intron 2 of 3) 14222 ENSMUSG00000039887.11 ENSMUSG00000039887 ENSMUST00000198341 Alg14 protein_coding Interval_146098 chr7 43873185 43873908 + 0 NA Intergenic Intergenic -7614 ENSMUSG00000006948.7 ENSMUSG00000006948 ENSMUST00000007161 Klk4 protein_coding Interval_24444 chr11 33293086 33293327 + 0 NA intron (ENSMUSG00000040594.19, intron 9 of 9) protein_coding-intron (ENSMUSG00000040594.19, intron 20 of 27) -16469 ENSMUSG00000098456.1 ENSMUSG00000098456 ENSMUST00000183831 Gm12117 protein_coding Interval_82237 chr18 69501943 69502343 + 0 NA intron (ENSMUSG00000053477.17, intron 1 of 5) protein_coding-intron (ENSMUSG00000053477.17, intron 6 of 20) -20307 ENSMUSG00000053477.17 ENSMUSG00000053477 ENSMUST00000136019 Tcf4 protein_coding Interval_1998 chr1 35811260 35811960 + 0 NA Intergenic Intergenic 4636 ENSMUSG00000101714.1 ENSMUSG00000101714 ENSMUST00000187528 Gm28415 lincRNA Interval_76701 chr17 83578685 83579596 + 0 NA Intergenic Intergenic 52755 ENSMUSG00000045053.2 ENSMUSG00000045053 ENSMUST00000051482 Kcng3 protein_coding Interval_97425 chr2 136065491 136066163 + 0 NA intron (ENSMUSG00000027270.14, intron 3 of 3) protein_coding-intron (ENSMUSG00000027270.14, intron 5 of 5) 7575 ENSMUSG00000027270.14 ENSMUSG00000027270 ENSMUST00000123436 Lamp5 protein_coding Interval_1306 chr1 19799137 19799866 + 0 NA Intergenic Intergenic 185232 ENSMUSG00000102597.1 ENSMUSG00000102597 ENSMUST00000193790 Gm38382 TEC Interval_60932 chr15 77965138 77965514 + 0 NA exon (ENSMUSG00000097057.1, exon 2 of 2) antisense-exon (ENSMUSG00000097057.1, exon 2 of 2) -1554 ENSMUSG00000016554.9 ENSMUSG00000016554 ENSMUST00000229713 Eif3d protein_coding Interval_112503 chr4 41658175 41659180 + 0 NA intron (ENSMUSG00000028444.17, intron 8 of 9) protein_coding-intron (ENSMUSG00000028444.17, intron 8 of 9) 5357 ENSMUSG00000028444.17 ENSMUSG00000028444 ENSMUST00000145379 Cntfr protein_coding Interval_2662 chr1 43091753 43093114 + 0 NA promoter-TSS (ENSMUSG00000041878.3) antisense-promoter-TSS (ENSMUSG00000041878.3) -155 ENSMUSG00000041878.3 ENSMUSG00000041878 ENSMUST00000039080 8430432A02Rik antisense Interval_44946 chr13 50459994 50461608 + 0 NA intron (ENSMUSG00000101136.1, intron 1 of 1) antisense-intron (ENSMUSG00000101136.1, intron 1 of 1) -6506 ENSMUSG00000071909.2 ENSMUSG00000071909 ENSMUST00000096633 Nutm2 protein_coding Interval_80906 chr18 50052863 50053919 + 0 NA TTS (ENSMUSG00000062210.13) protein_coding-TTS (ENSMUSG00000062210.13) 453 ENSMUSG00000086600.8 ENSMUSG00000086600 ENSMUST00000147073 C030005K06Rik processed_transcript Interval_148723 chr7 84650760 84652027 + 0 NA intron (ENSMUSG00000030629.15, intron 1 of 3) protein_coding-intron (ENSMUSG00000030629.15, intron 2 of 7) 38490 ENSMUSG00000030629.15 ENSMUSG00000030629 ENSMUST00000207975 Zfand6 protein_coding Interval_161037 chr8 117067534 117068520 + 0 NA intron (ENSMUSG00000034416.18, intron 6 of 42) protein_coding-intron (ENSMUSG00000034416.18, intron 6 of 42) -27971 ENSMUSG00000031845.15 ENSMUSG00000031845 ENSMUST00000176860 Bco1 protein_coding Interval_83216 chr18 82815340 82816605 + 0 NA Intergenic Intergenic -39922 ENSMUSG00000097738.2 ENSMUSG00000097738 ENSMUST00000180631 4930445N18Rik lincRNA Interval_61054 chr15 78973519 78973722 + 0 NA promoter-TSS (ENSMUSG00000033088.19) protein_coding-promoter-TSS (ENSMUSG00000033088.19) 25701 ENSMUSG00000033088.19 ENSMUSG00000033088 ENSMUST00000129922 Triobp protein_coding Interval_31960 chr11 104169813 104172381 + 0 NA intron (ENSMUSG00000018634.10, intron 8 of 12) protein_coding-intron (ENSMUSG00000018634.10, intron 8 of 12) -15230 ENSMUSG00000049506.7 ENSMUSG00000049506 ENSMUST00000059448 Sppl2c protein_coding Interval_111140 chr4 13027992 13028396 + 0 NA Intergenic Intergenic -47946 ENSMUSG00000086227.1 ENSMUSG00000086227 ENSMUST00000139614 Gm11820 lincRNA Interval_91601 chr2 44483076 44484156 + 0 NA Intergenic Intergenic 54681 ENSMUSG00000088124.1 ENSMUSG00000088124 ENSMUST00000157499 Gm22867 snRNA Interval_57262 chr15 8208200 8208774 + 0 NA intron (ENSMUSG00000039801.7, intron 21 of 52) protein_coding-intron (ENSMUSG00000039801.7, intron 21 of 52) -11517 ENSMUSG00000064566.1 ENSMUSG00000064566 ENSMUST00000082632 Gm24144 snRNA Interval_80922 chr18 50184805 50185695 + 0 NA intron (ENSMUSG00000024507.6, intron 22 of 23) protein_coding-intron (ENSMUSG00000024507.6, intron 22 of 23) 23894 ENSMUSG00000117714.1 ENSMUSG00000117714 ENSMUST00000238008 Gm50439 processed_pseudogene Interval_22134 chr11 6535809 6536598 + 0 NA Intergenic Intergenic -7424 ENSMUSG00000085156.8 ENSMUSG00000085156 ENSMUST00000134527 Snhg15 lincRNA Interval_117960 chr4 127344738 127346117 + 0 NA Intergenic Intergenic 8654 ENSMUSG00000046623.8 ENSMUSG00000046623 ENSMUST00000060419 Gjb4 protein_coding Interval_105329 chr3 84994250 84994456 + 0 NA intron (ENSMUSG00000102805.5, intron 3 of 9) protein_coding-intron (ENSMUSG00000102805.5, intron 3 of 9) 120462 ENSMUSG00000102919.1 ENSMUSG00000102919 ENSMUST00000193246 Gm37726 TEC Interval_106669 chr3 98338591 98340190 + 0 NA intron (ENSMUSG00000053398.11, intron 1 of 11) protein_coding-intron (ENSMUSG00000053398.11, intron 1 of 11) -5820 ENSMUSG00000053398.11 ENSMUSG00000053398 ENSMUST00000148488 Phgdh protein_coding Interval_131677 chr5 139236200 139236471 + 0 NA TTS (ENSMUSG00000036817.14) protein_coding-TTS (ENSMUSG00000036817.14) 12657 ENSMUSG00000036817.14 ENSMUSG00000036817 ENSMUST00000127310 Sun1 protein_coding Interval_28592 chr11 77028407 77028594 + 0 NA intron (ENSMUSG00000020838.12, intron 14 of 14) protein_coding-intron (ENSMUSG00000020838.12, intron 13 of 13) 10323 ENSMUSG00000020838.12 ENSMUSG00000020838 ENSMUST00000137819 Slc6a4 protein_coding Interval_21321 chr10 127945109 127945994 + 0 NA Intergenic Intergenic 3009 ENSMUSG00000090036.1 ENSMUSG00000090036 ENSMUST00000161584 Gm15900 processed_pseudogene Interval_166297 chr9 58143492 58143727 + 0 NA intron (ENSMUSG00000032327.14, intron 8 of 18) protein_coding-intron (ENSMUSG00000032327.14, intron 8 of 18) 9534 ENSMUSG00000032327.14 ENSMUSG00000032327 ENSMUST00000134450 Stra6 protein_coding Interval_168082 chr9 76026506 76026711 + 0 NA intron (ENSMUSG00000007908.14, intron 1 of 1) protein_coding-intron (ENSMUSG00000007908.14, intron 1 of 8) -11416 ENSMUSG00000097836.1 ENSMUSG00000097836 ENSMUST00000180749 Gm26903 antisense Interval_173875 chrX 106602382 106603441 + 0 NA intron (ENSMUSG00000073010.9, intron 1 of 3) protein_coding-intron (ENSMUSG00000073010.9, intron 1 of 6) 768 ENSMUSG00000052821.3 ENSMUSG00000052821 ENSMUST00000064892 Cysltr1 protein_coding Interval_33868 chr11 119085441 119086786 + 0 NA exon (ENSMUSG00000039989.7, exon 1 of 5) protein_coding-exon (ENSMUSG00000039989.7, exon 1 of 5) 108 ENSMUSG00000039989.7 ENSMUSG00000039989 ENSMUST00000145058 Cbx4 protein_coding Interval_105350 chr3 85357545 85358643 + 0 NA intron (ENSMUSG00000102805.5, intron 3 of 9) protein_coding-intron (ENSMUSG00000102805.5, intron 3 of 9) 40575 ENSMUSG00000099995.1 ENSMUSG00000099995 ENSMUST00000189046 1700036G14Rik antisense Interval_19766 chr10 108582231 108582635 + 0 NA intron (ENSMUSG00000035864.14, intron 10 of 11) protein_coding-intron (ENSMUSG00000035864.14, intron 9 of 10) 99783 ENSMUSG00000112065.1 ENSMUSG00000112065 ENSMUST00000217917 Gm47466 processed_pseudogene Interval_11643 chr1 183710293 183710823 + 0 NA Intergenic Intergenic -28427 ENSMUSG00000090533.2 ENSMUSG00000090533 ENSMUST00000172123 Gm8214 processed_pseudogene Interval_104500 chr3 66901805 66902661 + 0 NA Intergenic Intergenic 5533 ENSMUSG00000103318.1 ENSMUSG00000103318 ENSMUST00000194313 Gm38356 processed_pseudogene Interval_18837 chr10 91187443 91189512 + 0 NA Intergenic Intergenic -18015 ENSMUSG00000019961.17 ENSMUSG00000019961 ENSMUST00000213270 Tmpo protein_coding Interval_19750 chr10 108460142 108460362 + 0 NA Intergenic Intergenic 13650 ENSMUSG00000112532.1 ENSMUSG00000112532 ENSMUST00000220211 Gm36283 lincRNA Interval_77370 chr17 88292918 88293579 + 0 NA intron (ENSMUSG00000117351.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000117351.1, intron 1 of 1) 12130 ENSMUSG00000117497.1 ENSMUSG00000117497 ENSMUST00000234925 1700116H05Rik lincRNA Interval_166354 chr9 58554534 58555722 + 0 NA exon (ENSMUSG00000035914.11, exon 1 of 8) protein_coding-exon (ENSMUSG00000035914.11, exon 1 of 8) 329 ENSMUSG00000103486.1 ENSMUSG00000103486 ENSMUST00000193528 Gm10657 TEC Interval_57860 chr15 23416819 23417097 + 0 NA intron (ENSMUSG00000040420.15, intron 7 of 8) protein_coding-intron (ENSMUSG00000040420.15, intron 8 of 9) -2501 ENSMUSG00000115560.1 ENSMUSG00000115560 ENSMUST00000226326 Gm49191 antisense Interval_160248 chr8 107446902 107447161 + 0 NA intron (ENSMUSG00000031930.11, intron 1 of 7) protein_coding-intron (ENSMUSG00000031930.11, intron 1 of 23) -2339 ENSMUSG00000110501.1 ENSMUSG00000110501 ENSMUST00000211879 Gm45900 processed_pseudogene Interval_103164 chr3 36150878 36151648 + 0 NA exon (ENSMUSG00000033883.11, exon 1 of 3) protein_coding-exon (ENSMUSG00000033883.11, exon 1 of 3) 101 ENSMUSG00000033883.11 ENSMUSG00000033883 ENSMUST00000165956 Zfp267 protein_coding Interval_87270 chr19 47322004 47322632 + 0 NA intron (ENSMUSG00000053617.12, intron 6 of 13) protein_coding-intron (ENSMUSG00000053617.12, intron 6 of 14) -48729 ENSMUSG00000098786.1 ENSMUSG00000098786 ENSMUST00000183658 Mir6995 miRNA Interval_47329 chr13 81472532 81472944 + 0 NA intron (ENSMUSG00000069170.14, intron 56 of 89) protein_coding-intron (ENSMUSG00000069170.14, intron 56 of 89) -28064 ENSMUSG00000114454.1 ENSMUSG00000114454 ENSMUST00000224788 Gm48567 processed_pseudogene Interval_35171 chr12 17761582 17762901 + 0 NA intron (ENSMUSG00000071379.2, intron 1 of 4) protein_coding-intron (ENSMUSG00000071379.2, intron 1 of 3) 34015 ENSMUSG00000071379.2 ENSMUSG00000071379 ENSMUST00000222944 Hpcal1 protein_coding Interval_10664 chr1 172532312 172533012 + 0 NA TTS (ENSMUSG00000026546.16) protein_coding-TTS (ENSMUSG00000026546.16) 11861 ENSMUSG00000026546.16 ENSMUSG00000026546 ENSMUST00000160303 Cfap45 protein_coding Interval_110833 chr4 8834055 8835139 + 0 NA intron (ENSMUSG00000041235.12, intron 15 of 37) protein_coding-intron (ENSMUSG00000041235.12, intron 15 of 37) -20634 ENSMUSG00000041235.12 ENSMUSG00000041235 ENSMUST00000222546 Chd7 protein_coding Interval_47343 chr13 81694701 81695160 + 0 NA intron (ENSMUSG00000035834.11, intron 2 of 2) protein_coding-intron (ENSMUSG00000035834.11, intron 2 of 7) -7645 ENSMUSG00000035834.11 ENSMUSG00000035834 ENSMUST00000160331 Polr3g protein_coding Interval_150315 chr7 109556561 109556981 + 0 NA TTS (ENSMUSG00000031024.13) protein_coding-TTS (ENSMUSG00000031024.13) 35491 ENSMUSG00000077575.1 ENSMUSG00000077575 ENSMUST00000104387 Gm24888 snoRNA Interval_77703 chr17 94481243 94481510 + 0 NA Intergenic Intergenic -126809 ENSMUSG00000117476.1 ENSMUSG00000117476 ENSMUST00000234959 Gm9416 processed_pseudogene Interval_52428 chr14 46256312 46256998 + 0 NA Intergenic Intergenic -124472 ENSMUSG00000079261.2 ENSMUSG00000079261 ENSMUST00000147092 Gm15217 protein_coding Interval_61373 chr15 81180229 81180914 + 0 NA intron (ENSMUSG00000042292.18, intron 1 of 14) protein_coding-intron (ENSMUSG00000042292.18, intron 1 of 3) -10282 ENSMUSG00000047938.7 ENSMUSG00000047938 ENSMUST00000138715 4930483J18Rik processed_transcript Interval_148990 chr7 90864275 90865606 + 0 NA intron (ENSMUSG00000052572.19, intron 5 of 27) protein_coding-intron (ENSMUSG00000052572.19, intron 5 of 27) -6663 ENSMUSG00000109242.1 ENSMUSG00000109242 ENSMUST00000208672 A930002H02Rik TEC Interval_126147 chr5 79249004 79249472 + 0 NA Intergenic Intergenic -190959 ENSMUSG00000107308.1 ENSMUSG00000107308 ENSMUST00000200713 Gm43234 processed_pseudogene Interval_81953 chr18 66290938 66292367 + 0 NA promoter-TSS (ENSMUSG00000085055.2) antisense-promoter-TSS (ENSMUSG00000085055.2) 180 ENSMUSG00000046318.16 ENSMUSG00000046318 ENSMUST00000151343 Ccbe1 protein_coding Interval_81377 chr18 59842944 59843894 + 0 NA intron (ENSMUSG00000117701.1, intron 2 of 4) lincRNA-intron (ENSMUSG00000117701.1, intron 2 of 4) -11703 ENSMUSG00000117940.1 ENSMUSG00000117940 ENSMUST00000235963 Gm50235 processed_pseudogene Interval_27206 chr11 64103475 64103883 + 0 NA Intergenic Intergenic 24097 ENSMUSG00000087497.7 ENSMUSG00000087497 ENSMUST00000146333 2810001G20Rik antisense Interval_1729 chr1 33019686 33021301 + 0 NA Intergenic Intergenic 9797 ENSMUSG00000100497.1 ENSMUSG00000100497 ENSMUST00000186430 Gm28624 processed_pseudogene Interval_655 chr1 9610844 9611106 + 0 NA intron (ENSMUSG00000067879.3, intron 2 of 5) protein_coding-intron (ENSMUSG00000067879.3, intron 2 of 5) 9776 ENSMUSG00000067879.3 ENSMUSG00000067879 ENSMUST00000088666 Vxn protein_coding Interval_168126 chr9 77385614 77385830 + 0 NA intron (ENSMUSG00000099170.1, intron 2 of 3) lincRNA-intron (ENSMUSG00000099170.1, intron 2 of 3) 13696 ENSMUSG00000099170.1 ENSMUSG00000099170 ENSMUST00000183878 5730403I07Rik lincRNA Interval_122943 chr5 27687310 27687596 + 0 NA intron (ENSMUSG00000061576.15, intron 12 of 12) protein_coding-intron (ENSMUSG00000061576.15, intron 16 of 25) 104238 ENSMUSG00000002221.11 ENSMUSG00000002221 ENSMUST00000199714 Paxip1 protein_coding Interval_89973 chr2 26952039 26952259 + 0 NA intron (ENSMUSG00000049897.14, intron 16 of 18) protein_coding-intron (ENSMUSG00000049897.14, intron 16 of 18) 3535 ENSMUSG00000052406.14 ENSMUSG00000052406 ENSMUST00000128401 Rexo4 protein_coding Interval_11266 chr1 180589896 180590125 + 0 NA intron (ENSMUSG00000026496.11, intron 1 of 1) protein_coding-intron (ENSMUSG00000026496.11, intron 13 of 22) 2809 ENSMUSG00000098926.1 ENSMUSG00000098926 ENSMUST00000183443 Mir6904 miRNA Interval_7336 chr1 129436217 129437002 + 0 NA intron (ENSMUSG00000042581.14, intron 2 of 3) protein_coding-intron (ENSMUSG00000042581.14, intron 2 of 15) 64305 ENSMUSG00000103637.1 ENSMUSG00000103637 ENSMUST00000192743 Gm38330 TEC Interval_169189 chr9 95413755 95414128 + 0 NA Intergenic Intergenic -2285 ENSMUSG00000101281.1 ENSMUSG00000101281 ENSMUST00000185532 Gm8449 processed_pseudogene Interval_162429 chr8 128653735 128655049 + 0 NA promoter-TSS (ENSMUSG00000110654.1) TEC-promoter-TSS (ENSMUSG00000110654.1) 79 ENSMUSG00000110654.1 ENSMUSG00000110654 ENSMUST00000212623 Gm45746 TEC Interval_162350 chr8 127330623 127330884 + 0 NA intron (ENSMUSG00000025812.18, intron 5 of 15) protein_coding-intron (ENSMUSG00000025812.18, intron 5 of 23) 159349 ENSMUSG00000025812.18 ENSMUSG00000025812 ENSMUST00000159940 Pard3 protein_coding Interval_122265 chr5 20791722 20793092 + 0 NA TTS (ENSMUSG00000039987.15) protein_coding-TTS (ENSMUSG00000039987.15) -13683 ENSMUSG00000082716.1 ENSMUSG00000082716 ENSMUST00000118086 Rpl31-ps5 processed_pseudogene Interval_65380 chr16 22021816 22022853 + 0 NA intron (ENSMUSG00000022855.9, intron 4 of 15) protein_coding-intron (ENSMUSG00000022855.9, intron 5 of 16) 12773 ENSMUSG00000022855.9 ENSMUSG00000022855 ENSMUST00000232263 Senp2 protein_coding Interval_29158 chr11 80817869 80818851 + 0 NA intron (ENSMUSG00000035413.8, intron 5 of 6) protein_coding-intron (ENSMUSG00000035413.8, intron 5 of 6) 4833 ENSMUSG00000081663.1 ENSMUSG00000081663 ENSMUST00000117824 Gm11207 processed_pseudogene Interval_34306 chr12 3267454 3267725 + 0 NA intron (ENSMUSG00000020671.9, intron 1 of 5) protein_coding-intron (ENSMUSG00000020671.9, intron 1 of 5) 31674 ENSMUSG00000079179.9 ENSMUSG00000079179 ENSMUST00000049684 Rab10os antisense Interval_126905 chr5 96972261 96973382 + 0 NA Intergenic Intergenic 24543 ENSMUSG00000105006.1 ENSMUSG00000105006 ENSMUST00000195892 Gm9484 lincRNA Interval_13947 chr10 24916066 24918428 + 0 NA promoter-TSS (ENSMUSG00000019987.9) protein_coding-promoter-TSS (ENSMUSG00000019987.9) 6583 ENSMUSG00000099181.1 ENSMUSG00000099181 ENSMUST00000184228 Mir6905 miRNA Interval_169404 chr9 97001270 97002331 + 0 NA intron (ENSMUSG00000046997.5, intron 1 of 1) protein_coding-intron (ENSMUSG00000046997.5, intron 1 of 2) -14166 ENSMUSG00000085541.1 ENSMUSG00000085541 ENSMUST00000124366 Gm16010 antisense Interval_121299 chr4 154825378 154826466 + 0 NA Intergenic Intergenic -11537 ENSMUSG00000046637.3 ENSMUSG00000046637 ENSMUST00000137684 Ttc34 protein_coding Interval_140200 chr6 115360799 115362465 + 0 NA promoter-TSS (ENSMUSG00000000440.12) protein_coding-promoter-TSS (ENSMUSG00000000440.12) -22067 ENSMUSG00000000440.12 ENSMUSG00000000440 ENSMUST00000203896 Pparg protein_coding Interval_71228 chr17 21422578 21423612 + 0 NA promoter-TSS (ENSMUSG00000023882.15) protein_coding-promoter-TSS (ENSMUSG00000023882.15) -163 ENSMUSG00000023882.15 ENSMUSG00000023882 ENSMUST00000167749 Zfp54 protein_coding Interval_125232 chr5 65553520 65553710 + 0 NA intron (ENSMUSG00000029203.16, intron 1 of 4) protein_coding-intron (ENSMUSG00000029203.16, intron 1 of 6) 11686 ENSMUSG00000107362.1 ENSMUSG00000107362 ENSMUST00000202699 Gm40309 TEC Interval_48960 chr13 106055820 106056022 + 0 NA Intergenic Intergenic 13797 ENSMUSG00000114899.1 ENSMUSG00000114899 ENSMUST00000224697 Gm48214 processed_pseudogene Interval_145544 chr7 35503305 35503510 + 0 NA intron (ENSMUSG00000030491.16, intron 2 of 4) protein_coding-intron (ENSMUSG00000030491.16, intron 9 of 11) 1601 ENSMUSG00000030491.16 ENSMUSG00000030491 ENSMUST00000127472 Tdrd12 protein_coding Interval_43358 chr13 29641532 29641814 + 0 NA intron (ENSMUSG00000006191.17, intron 8 of 11) protein_coding-intron (ENSMUSG00000006191.17, intron 8 of 15) -124219 ENSMUSG00000006191.17 ENSMUSG00000006191 ENSMUST00000129231 Cdkal1 protein_coding Interval_111899 chr4 32351300 32351539 + 0 NA intron (ENSMUSG00000040270.16, intron 2 of 3) protein_coding-intron (ENSMUSG00000040270.16, intron 2 of 7) -66016 ENSMUSG00000040270.16 ENSMUSG00000040270 ENSMUST00000125263 Bach2 protein_coding Interval_157059 chr8 64871868 64872272 + 0 NA Intergenic Intergenic -22146 ENSMUSG00000031605.8 ENSMUSG00000031605 ENSMUST00000209544 Klhl2 protein_coding Interval_95276 chr2 105504121 105504592 + 0 NA Intergenic Intergenic 27855 ENSMUSG00000086764.1 ENSMUSG00000086764 ENSMUST00000130677 4930527A07Rik lincRNA Interval_36528 chr12 48454031 48454342 + 0 NA Intergenic Intergenic -41033 ENSMUSG00000112085.1 ENSMUSG00000112085 ENSMUST00000218671 Gm48587 unprocessed_pseudogene Interval_74012 chr17 46052754 46053003 + 0 NA Intergenic Intergenic -28014 ENSMUSG00000023951.18 ENSMUSG00000023951 ENSMUST00000146149 Vegfa protein_coding Interval_116730 chr4 116965599 116965796 + 0 NA exon (ENSMUSG00000033948.3, exon 5 of 14) protein_coding-exon (ENSMUSG00000033948.3, exon 5 of 14) -19163 ENSMUSG00000082207.1 ENSMUSG00000082207 ENSMUST00000122445 Gm12998 processed_pseudogene Interval_33028 chr11 113763403 113764791 + 0 NA Intergenic Intergenic 7395 ENSMUSG00000083090.1 ENSMUSG00000083090 ENSMUST00000121468 Gm11736 processed_pseudogene Interval_122680 chr5 24625818 24626248 + 0 NA Intergenic Intergenic -2897 ENSMUSG00000028949.13 ENSMUSG00000028949 ENSMUST00000199393 Smarcd3 protein_coding Interval_109627 chr3 145463958 145464345 + 0 NA intron (ENSMUSG00000028197.4, intron 37 of 59) protein_coding-intron (ENSMUSG00000028197.4, intron 37 of 59) 44825 ENSMUSG00000105959.1 ENSMUSG00000105959 ENSMUST00000199255 D530037P16Rik sense_overlapping Interval_28249 chr11 74679852 74680836 + 0 NA intron (ENSMUSG00000020745.15, intron 9 of 9) protein_coding-intron (ENSMUSG00000020745.15, intron 9 of 10) 30804 ENSMUSG00000020741.17 ENSMUSG00000020741 ENSMUST00000128155 Cluh protein_coding Interval_40947 chr12 110150513 110151579 + 0 NA TTS (ENSMUSG00000113331.1) lincRNA-TTS (ENSMUSG00000113331.1) 7031 ENSMUSG00000113331.1 ENSMUSG00000113331 ENSMUST00000223217 3110009F21Rik lincRNA Interval_39953 chr12 100090821 100091087 + 0 NA intron (ENSMUSG00000113268.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000113268.1, intron 1 of 1) 6264 ENSMUSG00000113268.1 ENSMUSG00000113268 ENSMUST00000223195 4930477G07Rik lincRNA Interval_95232 chr2 105059135 105059345 + 0 NA Intergenic Intergenic -26953 ENSMUSG00000083487.1 ENSMUSG00000083487 ENSMUST00000119148 Gm13888 processed_pseudogene Interval_23072 chr11 19728567 19728806 + 0 NA Intergenic Intergenic 8331 ENSMUSG00000082100.1 ENSMUSG00000082100 ENSMUST00000120291 Glns-ps1 processed_pseudogene Interval_107946 chr3 117111875 117112076 + 0 NA Intergenic Intergenic -10461 ENSMUSG00000106343.1 ENSMUSG00000106343 ENSMUST00000197534 Gm18430 processed_pseudogene Interval_160080 chr8 106244774 106244947 + 0 NA TTS (ENSMUSG00000060098.11) protein_coding-TTS (ENSMUSG00000060098.11) 10335 ENSMUSG00000060098.11 ENSMUSG00000060098 ENSMUST00000134151 Prmt7 protein_coding Interval_91117 chr2 35214378 35215578 + 0 NA Intergenic Intergenic -9555 ENSMUSG00000084768.2 ENSMUSG00000084768 ENSMUST00000124489 Gm13605 lincRNA Interval_26811 chr11 60770509 60770721 + 0 NA intron (ENSMUSG00000002814.15, intron 1 of 17) protein_coding-intron (ENSMUSG00000002814.15, intron 1 of 18) 6684 ENSMUSG00000002814.15 ENSMUSG00000002814 ENSMUST00000130068 Top3a protein_coding Interval_14416 chr10 33352837 33353907 + 0 NA intron (ENSMUSG00000019787.9, intron 20 of 37) protein_coding-intron (ENSMUSG00000019787.9, intron 20 of 37) -25597 ENSMUSG00000112855.1 ENSMUSG00000112855 ENSMUST00000220106 Gm47842 processed_pseudogene Interval_102035 chr3 15359694 15360136 + 0 NA Intergenic Intergenic -27613 ENSMUSG00000078783.1 ENSMUSG00000078783 ENSMUST00000108361 Gm9733 protein_coding Interval_16565 chr10 63741320 63742089 + 0 NA intron (ENSMUSG00000060843.11, intron 5 of 17) protein_coding-intron (ENSMUSG00000060843.11, intron 4 of 16) -79351 ENSMUSG00000060843.11 ENSMUSG00000060843 ENSMUST00000135474 Ctnna3 protein_coding Interval_91702 chr2 48432880 48434707 + 0 NA intron (ENSMUSG00000086353.1, intron 1 of 5) lincRNA-intron (ENSMUSG00000086353.1, intron 1 of 5) 23452 ENSMUSG00000086353.1 ENSMUSG00000086353 ENSMUST00000127672 Gm13481 lincRNA Interval_46905 chr13 73317689 73318849 + 0 NA TTS (ENSMUSG00000066407.3) processed_pseudogene-TTS (ENSMUSG00000066407.3) 425 ENSMUSG00000066407.3 ENSMUSG00000066407 ENSMUST00000085163 Gm10263 processed_pseudogene Interval_90236 chr2 29206284 29206509 + 0 NA intron (ENSMUSG00000035513.19, intron 3 of 6) protein_coding-intron (ENSMUSG00000035513.19, intron 3 of 8) 41729 ENSMUSG00000035513.19 ENSMUSG00000035513 ENSMUST00000149096 Ntng2 protein_coding Interval_68259 chr16 71445742 71446527 + 0 NA Intergenic Intergenic 196250 ENSMUSG00000116982.1 ENSMUSG00000116982 ENSMUST00000231541 4930567J20Rik lincRNA Interval_52533 chr14 47350989 47351747 + 0 NA Intergenic Intergenic -22548 ENSMUSG00000050335.17 ENSMUSG00000050335 ENSMUST00000146468 Lgals3 protein_coding Interval_124194 chr5 39720015 39721165 + 0 NA intron (ENSMUSG00000051022.7, intron 2 of 2) protein_coding-intron (ENSMUSG00000051022.7, intron 2 of 2) -75993 ENSMUSG00000051022.7 ENSMUSG00000051022 ENSMUST00000152057 Hs3st1 protein_coding Interval_140295 chr6 116213603 116213831 + 0 NA intron (ENSMUSG00000024104.11, intron 2 of 24) protein_coding-intron (ENSMUSG00000024104.11, intron 3 of 30) -5724 ENSMUSG00000108030.1 ENSMUSG00000108030 ENSMUST00000203332 9530062K07Rik bidirectional_promoter_lncRNA Interval_108418 chr3 126932040 126932512 + 0 NA TTS (ENSMUSG00000032826.19) protein_coding-TTS (ENSMUSG00000032826.19) 35243 ENSMUSG00000105469.1 ENSMUSG00000105469 ENSMUST00000196018 A930036I15Rik TEC Interval_87737 chr19 55537655 55538176 + 0 NA intron (ENSMUSG00000024983.10, intron 8 of 8) protein_coding-intron (ENSMUSG00000024983.10, intron 7 of 7) -204349 ENSMUSG00000024985.20 ENSMUSG00000024985 ENSMUST00000148666 Tcf7l2 protein_coding Interval_131913 chr5 140751121 140751470 + 0 NA intron (ENSMUSG00000050022.16, intron 1 of 3) protein_coding-intron (ENSMUSG00000050022.16, intron 7 of 7) 27157 ENSMUSG00000050022.16 ENSMUSG00000050022 ENSMUST00000176035 Amz1 protein_coding Interval_166229 chr9 57633538 57633860 + 0 NA intron (ENSMUSG00000032312.7, intron 1 of 4) protein_coding-intron (ENSMUSG00000032312.7, intron 1 of 12) 368 ENSMUSG00000032312.7 ENSMUSG00000032312 ENSMUST00000213943 Csk protein_coding Interval_89205 chr2 18039002 18041722 + 0 NA TTS (ENSMUSG00000085319.1) antisense-TTS (ENSMUSG00000085319.1) 4210 ENSMUSG00000054074.9 ENSMUSG00000054074 ENSMUST00000152908 Skida1 protein_coding Interval_85753 chr19 30427180 30427934 + 0 NA Intergenic Intergenic 63728 ENSMUSG00000118374.1 ENSMUSG00000118374 ENSMUST00000236809 Gm17885 processed_pseudogene Interval_80114 chr18 37706965 37707906 + 0 NA exon (ENSMUSG00000103793.1, exon 1 of 4) protein_coding-exon (ENSMUSG00000103793.1, exon 1 of 4) 396 ENSMUSG00000103793.1 ENSMUSG00000103793 ENSMUST00000195823 Pcdhga6 protein_coding Interval_57169 chr15 7123698 7123975 + 0 NA intron (ENSMUSG00000054263.12, intron 1 of 4) protein_coding-intron (ENSMUSG00000054263.12, intron 1 of 4) 33222 ENSMUSG00000054263.12 ENSMUSG00000054263 ENSMUST00000171588 Lifr protein_coding Interval_62595 chr15 95154245 95154942 + 0 NA intron (ENSMUSG00000100603.6, intron 1 of 3) sense_intronic-intron (ENSMUSG00000100603.6, intron 1 of 3) 7801 ENSMUSG00000100603.6 ENSMUSG00000100603 ENSMUST00000185302 1700129L04Rik sense_intronic Interval_63775 chr15 103347375 103347932 + 0 NA intron (ENSMUSG00000000555.8, intron 28 of 30) protein_coding-intron (ENSMUSG00000000555.8, intron 27 of 29) 2872 ENSMUSG00000098419.1 ENSMUSG00000098419 ENSMUST00000183535 Mir6963 miRNA Interval_51197 chr14 24778886 24779849 + 0 NA intron (ENSMUSG00000089887.2, intron 3 of 5) lincRNA-intron (ENSMUSG00000089887.2, intron 3 of 5) -54268 ENSMUSG00000114965.1 ENSMUSG00000114965 ENSMUST00000223735 Gm47906 lincRNA Interval_133022 chr5 149343391 149344440 + 0 NA Intergenic Intergenic -24561 ENSMUSG00000107314.1 ENSMUSG00000107314 ENSMUST00000201641 Gm20488 processed_transcript Interval_174642 chrX 161925881 161926936 + 0 NA intron (ENSMUSG00000059493.13, intron 1 of 8) protein_coding-intron (ENSMUSG00000059493.13, intron 1 of 7) 18185 ENSMUSG00000087571.1 ENSMUSG00000087571 ENSMUST00000154188 Gm15202 antisense Interval_17352 chr10 76032028 76033059 + 0 NA promoter-TSS (ENSMUSG00000049764.8) protein_coding-promoter-TSS (ENSMUSG00000049764.8) -107 ENSMUSG00000049764.8 ENSMUSG00000049764 ENSMUST00000061617 Zfp280b protein_coding Interval_142099 chr6 137144569 137144980 + 0 NA intron (ENSMUSG00000030222.13, intron 2 of 2) protein_coding-intron (ENSMUSG00000030222.13, intron 2 of 4) 2155 ENSMUSG00000107567.1 ENSMUSG00000107567 ENSMUST00000203679 4930480K02Rik TEC Interval_23060 chr11 19533491 19533973 + 0 NA Intergenic Intergenic 94329 ENSMUSG00000086911.1 ENSMUSG00000086911 ENSMUST00000146531 Gm12027 lincRNA Interval_20237 chr10 116346387 116346989 + 0 NA intron (ENSMUSG00000020154.10, intron 16 of 33) protein_coding-intron (ENSMUSG00000020154.10, intron 14 of 31) 6105 ENSMUSG00000065086.1 ENSMUSG00000065086 ENSMUST00000083152 Gm26495 snoRNA Interval_30503 chr11 94808371 94808622 + 0 NA Intergenic Intergenic 4852 ENSMUSG00000081478.1 ENSMUSG00000081478 ENSMUST00000121794 AA623943 unprocessed_pseudogene Interval_141317 chr6 127147840 127148155 + 0 NA TTS (ENSMUSG00000000184.12) protein_coding-TTS (ENSMUSG00000000184.12) -1392 ENSMUSG00000097166.1 ENSMUSG00000097166 ENSMUST00000180569 9330179D12Rik antisense Interval_112741 chr4 44543647 44544792 + 0 NA intron (ENSMUSG00000014030.15, intron 6 of 7) protein_coding-intron (ENSMUSG00000014030.15, intron 6 of 7) 63349 ENSMUSG00000092761.1 ENSMUSG00000092761 ENSMUST00000175020 Mir5120 miRNA Interval_150651 chr7 113105583 113105797 + 0 NA intron (ENSMUSG00000110009.1, intron 3 of 5) lincRNA-intron (ENSMUSG00000110009.1, intron 3 of 4) -14008 ENSMUSG00000088671.1 ENSMUSG00000088671 ENSMUST00000158046 Gm23662 rRNA Interval_123754 chr5 35225214 35225933 + 0 NA Intergenic Intergenic -52746 ENSMUSG00000045318.6 ENSMUSG00000045318 ENSMUST00000049545 Adra2c protein_coding Interval_164542 chr9 38202610 38202837 + 0 NA Intergenic Intergenic -6489 ENSMUSG00000093901.3 ENSMUSG00000093901 ENSMUST00000212815 Olfr893 protein_coding Interval_60909 chr15 77790679 77791440 + 0 NA exon (ENSMUSG00000022443.17, exon 8 of 41) protein_coding-exon (ENSMUSG00000022443.17, exon 8 of 41) -9926 ENSMUSG00000022443.17 ENSMUSG00000022443 ENSMUST00000134878 Myh9 protein_coding Interval_69935 chr17 3297886 3298122 + 0 NA intron (ENSMUSG00000116858.1, intron 3 of 3) lincRNA-intron (ENSMUSG00000116858.1, intron 3 of 3) -14797 ENSMUSG00000116874.1 ENSMUSG00000116874 ENSMUST00000231652 Gm34035 lincRNA Interval_110052 chr3 152783726 152784568 + 0 NA intron (ENSMUSG00000039047.17, intron 10 of 14) protein_coding-intron (ENSMUSG00000039047.17, intron 11 of 11) -2086 ENSMUSG00000090095.1 ENSMUSG00000090095 ENSMUST00000161849 Rpl29-ps1 processed_pseudogene Interval_174615 chrX 160135378 160136347 + 0 NA intron (ENSMUSG00000031299.10, intron 1 of 4) protein_coding-intron (ENSMUSG00000031299.10, intron 1 of 10) -6897 ENSMUSG00000031299.10 ENSMUSG00000031299 ENSMUST00000127535 Pdha1 protein_coding Interval_44967 chr13 51016851 51018547 + 0 NA Intergenic Intergenic 3613 ENSMUSG00000084609.2 ENSMUSG00000084609 ENSMUST00000122660 Gm22199 misc_RNA Interval_62344 chr15 90628726 90628923 + 0 NA intron (ENSMUSG00000052560.15, intron 3 of 18) protein_coding-intron (ENSMUSG00000052560.15, intron 3 of 19) 50552 ENSMUSG00000052560.15 ENSMUSG00000052560 ENSMUST00000154569 Cpne8 protein_coding Interval_11965 chr1 187823416 187823620 + 0 NA intron (ENSMUSG00000026610.13, intron 3 of 3) protein_coding-intron (ENSMUSG00000026610.13, intron 2 of 7) 110713 ENSMUSG00000118492.1 ENSMUSG00000118492 ENSMUST00000238811 AC121143.1 processed_pseudogene Interval_12689 chr10 4332325 4334948 + 0 NA promoter-TSS (ENSMUSG00000038587.10) protein_coding-promoter-TSS (ENSMUSG00000038587.10) -909 ENSMUSG00000038587.10 ENSMUSG00000038587 ENSMUST00000215696 Akap12 protein_coding Interval_24718 chr11 36147167 36147468 + 0 NA intron (ENSMUSG00000049336.16, intron 9 of 28) protein_coding-intron (ENSMUSG00000049336.16, intron 9 of 28) 66653 ENSMUSG00000087245.1 ENSMUSG00000087245 ENSMUST00000147717 Gm12126 antisense Interval_25193 chr11 45046232 45047351 + 0 NA Intergenic Intergenic 70137 ENSMUSG00000084773.1 ENSMUSG00000084773 ENSMUST00000143869 Gm12159 lincRNA Interval_164877 chr9 42747540 42748013 + 0 NA intron (ENSMUSG00000032017.14, intron 3 of 20) protein_coding-intron (ENSMUSG00000032017.14, intron 1 of 18) 114353 ENSMUSG00000076355.2 ENSMUSG00000076355 ENSMUST00000102400 Gm27509 miRNA Interval_173389 chrX 86374060 86374786 + 0 NA Intergenic Intergenic -2593 ENSMUSG00000085577.1 ENSMUSG00000085577 ENSMUST00000126612 Mageb6-ps unprocessed_pseudogene Interval_33695 chr11 117949413 117950258 + 0 NA Intergenic Intergenic 19616 ENSMUSG00000053113.3 ENSMUSG00000053113 ENSMUST00000132295 Socs3 protein_coding Interval_40473 chr12 105073816 105074299 + 0 NA Intergenic Intergenic 41369 ENSMUSG00000021102.4 ENSMUSG00000021102 ENSMUST00000220494 Glrx5 protein_coding Interval_18710 chr10 89542463 89542689 + 0 NA Intergenic Intergenic -8991 ENSMUSG00000047638.15 ENSMUSG00000047638 ENSMUST00000105297 Nr1h4 protein_coding Interval_148536 chr7 82249200 82249648 + 0 NA intron (ENSMUSG00000030638.13, intron 1 of 5) protein_coding-intron (ENSMUSG00000030638.13, intron 1 of 8) 74268 ENSMUSG00000030638.13 ENSMUSG00000030638 ENSMUST00000178526 Sh3gl3 protein_coding Interval_124575 chr5 51495484 51495767 + 0 NA TTS (ENSMUSG00000029167.13) protein_coding-TTS (ENSMUSG00000029167.13) -2709 ENSMUSG00000105622.1 ENSMUSG00000105622 ENSMUST00000197704 Gm42615 TEC Interval_26807 chr11 60731174 60731527 + 0 NA TTS (ENSMUSG00000018599.5) protein_coding-TTS (ENSMUSG00000018599.5) 2687 ENSMUSG00000092734.1 ENSMUSG00000092734 ENSMUST00000174993 Mir5100 miRNA Interval_158798 chr8 86723029 86723434 + 0 NA TTS (ENSMUSG00000036840.5) protein_coding-TTS (ENSMUSG00000036840.5) -22222 ENSMUSG00000074178.3 ENSMUSG00000074178 ENSMUST00000098532 Gm10638 antisense Interval_124166 chr5 38787812 38788061 + 0 NA intron (ENSMUSG00000039315.15, intron 3 of 18) protein_coding-intron (ENSMUSG00000039315.15, intron 3 of 18) 51952 ENSMUSG00000079528.9 ENSMUSG00000079528 ENSMUST00000177682 Clnkos antisense Interval_60120 chr15 65891023 65891627 + 0 NA intron (ENSMUSG00000015001.17, intron 4 of 11) protein_coding-intron (ENSMUSG00000015001.17, intron 6 of 14) 10236 ENSMUSG00000015001.17 ENSMUSG00000015001 ENSMUST00000147776 Oc90 protein_coding Interval_143933 chr7 18180718 18181135 + 0 NA intron (ENSMUSG00000066756.5, intron 3 of 3) protein_coding-intron (ENSMUSG00000066756.5, intron 3 of 3) 4432 ENSMUSG00000066756.5 ENSMUSG00000066756 ENSMUST00000152973 Igfl3 protein_coding Interval_31697 chr11 102308815 102311547 + 0 NA promoter-TSS (ENSMUSG00000020923.17) protein_coding-promoter-TSS (ENSMUSG00000020923.17) 8915 ENSMUSG00000020923.17 ENSMUSG00000020923 ENSMUST00000128016 Ubtf protein_coding Interval_125183 chr5 65150069 65150276 + 0 NA intron (ENSMUSG00000054920.12, intron 4 of 9) protein_coding-intron (ENSMUSG00000054920.12, intron 5 of 10) 13870 ENSMUSG00000087748.1 ENSMUSG00000087748 ENSMUST00000157123 Gm25154 rRNA Interval_21634 chr11 3360696 3361624 + 0 NA intron (ENSMUSG00000020451.17, intron 2 of 3) protein_coding-intron (ENSMUSG00000020451.17, intron 2 of 15) -6249 ENSMUSG00000087055.1 ENSMUSG00000087055 ENSMUST00000142322 Gm11948 sense_intronic Interval_112284 chr4 40014455 40015024 + 0 NA Intergenic Intergenic -33181 ENSMUSG00000088526.1 ENSMUSG00000088526 ENSMUST00000157901 Gm26087 snRNA Interval_119042 chr4 135166271 135168552 + 0 NA intron (ENSMUSG00000070691.10, intron 3 of 4) protein_coding-intron (ENSMUSG00000070691.10, intron 4 of 5) 14473 ENSMUSG00000070691.10 ENSMUSG00000070691 ENSMUST00000127109 Runx3 protein_coding Interval_54807 chr14 75303755 75304345 + 0 NA intron (ENSMUSG00000022000.11, intron 4 of 18) protein_coding-intron (ENSMUSG00000022000.11, intron 4 of 18) 31701 ENSMUSG00000021999.9 ENSMUSG00000021999 ENSMUST00000227817 Cpb2 protein_coding Interval_144002 chr7 18896746 18897096 + 0 NA intron (ENSMUSG00000074358.9, intron 5 of 13) protein_coding-intron (ENSMUSG00000074358.9, intron 5 of 13) -4569 ENSMUSG00000074358.9 ENSMUSG00000074358 ENSMUST00000139077 Ccdc61 protein_coding Interval_54323 chr14 67674779 67677373 + 0 NA promoter-TSS (ENSMUSG00000093726.1) sense_overlapping-promoter-TSS (ENSMUSG00000093726.1) -970 ENSMUSG00000093726.1 ENSMUSG00000093726 ENSMUST00000175674 Gm20667 sense_overlapping Interval_150570 chr7 112511469 112512825 + 0 NA intron (ENSMUSG00000030770.15, intron 2 of 4) protein_coding-intron (ENSMUSG00000030770.15, intron 1 of 12) 23536 ENSMUSG00000085049.1 ENSMUSG00000085049 ENSMUST00000154848 Parvaos antisense Interval_153354 chr7 143856078 143856402 + 0 NA Intergenic Intergenic -10631 ENSMUSG00000031085.16 ENSMUSG00000031085 ENSMUST00000207388 Acte1 protein_coding Interval_123930 chr5 36678743 36679015 + 0 NA intron (ENSMUSG00000029190.19, intron 1 of 2) protein_coding-intron (ENSMUSG00000029190.19, intron 1 of 8) 7221 ENSMUSG00000089197.1 ENSMUSG00000089197 ENSMUST00000158572 Gm25767 snoRNA Interval_93900 chr2 78616489 78616925 + 0 NA Intergenic Intergenic 19038 ENSMUSG00000082046.1 ENSMUSG00000082046 ENSMUST00000119658 Gm14464 processed_pseudogene Interval_9147 chr1 154061163 154062027 + 0 NA intron (ENSMUSG00000100627.6, intron 3 of 3) lincRNA-intron (ENSMUSG00000100627.6, intron 2 of 2) 18604 ENSMUSG00000088669.1 ENSMUSG00000088669 ENSMUST00000158044 Gm25336 snoRNA Interval_91934 chr2 51742917 51743581 + 0 NA Intergenic Intergenic -11240 ENSMUSG00000085014.1 ENSMUSG00000085014 ENSMUST00000143870 Gm13490 lincRNA Interval_57526 chr15 12098340 12099917 + 0 NA Intergenic Intergenic -13931 ENSMUSG00000115441.1 ENSMUSG00000115441 ENSMUST00000227908 Gm34759 lincRNA Interval_79052 chr18 24180917 24181158 + 0 NA Intergenic Intergenic -51560 ENSMUSG00000000420.15 ENSMUSG00000000420 ENSMUST00000170191 Galnt1 protein_coding Interval_158884 chr8 87693684 87695527 + 0 NA intron (ENSMUSG00000045333.15, intron 3 of 5) protein_coding-intron (ENSMUSG00000045333.15, intron 4 of 6) 57948 ENSMUSG00000089301.1 ENSMUSG00000089301 ENSMUST00000158676 Gm24841 misc_RNA Interval_81791 chr18 64743381 64743657 + 0 NA Intergenic Intergenic 15453 ENSMUSG00000095778.1 ENSMUSG00000095778 ENSMUST00000158431 Gm23016 snRNA Interval_95614 chr2 112826528 112826731 + 0 NA intron (ENSMUSG00000057378.15, intron 37 of 103) protein_coding-intron (ENSMUSG00000057378.15, intron 37 of 102) -170081 ENSMUSG00000057378.15 ENSMUSG00000057378 ENSMUST00000208135 Ryr3 protein_coding Interval_30111 chr11 89269741 89270214 + 0 NA Intergenic Intergenic 32355 ENSMUSG00000048616.4 ENSMUSG00000048616 ENSMUST00000061728 Nog protein_coding Interval_9070 chr1 153401683 153402621 + 0 NA Intergenic Intergenic 12081 ENSMUSG00000073538.10 ENSMUSG00000073538 ENSMUST00000188717 E330020D12Rik processed_transcript Interval_163863 chr9 27269157 27269544 + 0 NA Intergenic Intergenic 23994 ENSMUSG00000111387.1 ENSMUSG00000111387 ENSMUST00000217080 Gm48803 lincRNA Interval_63995 chr16 5113416 5114382 + 0 NA intron (ENSMUSG00000039457.4, intron 1 of 15) protein_coding-intron (ENSMUSG00000039457.4, intron 1 of 21) 18511 ENSMUSG00000039457.4 ENSMUSG00000039457 ENSMUST00000230554 Ppl protein_coding Interval_33794 chr11 118551274 118553452 + 0 NA intron (ENSMUSG00000025576.17, intron 3 of 13) protein_coding-intron (ENSMUSG00000025576.17, intron 4 of 14) -45010 ENSMUSG00000025576.17 ENSMUSG00000025576 ENSMUST00000134774 Rbfox3 protein_coding Interval_104812 chr3 74470614 74471523 + 0 NA Intergenic Intergenic -147076 ENSMUSG00000104227.1 ENSMUSG00000104227 ENSMUST00000193464 Gm37050 processed_pseudogene Interval_112486 chr4 41542236 41542916 + 0 NA intron (ENSMUSG00000028439.14, intron 1 of 5) protein_coding-intron (ENSMUSG00000028439.14, intron 1 of 5) 21882 ENSMUSG00000087623.1 ENSMUSG00000087623 ENSMUST00000122839 Gm12404 processed_transcript Interval_111822 chr4 31546511 31546825 + 0 NA Intergenic Intergenic 166196 ENSMUSG00000082254.1 ENSMUSG00000082254 ENSMUST00000118967 Gm11922 processed_pseudogene Interval_157101 chr8 65193747 65195112 + 0 NA Intergenic Intergenic 10185 ENSMUSG00000110283.1 ENSMUSG00000110283 ENSMUST00000211021 Gm45249 processed_pseudogene Interval_113772 chr4 58491547 58492270 + 0 NA intron (ENSMUSG00000038668.14, intron 3 of 3) protein_coding-intron (ENSMUSG00000038668.14, intron 2 of 3) -8083 ENSMUSG00000083834.1 ENSMUSG00000083834 ENSMUST00000119701 Gm12577 processed_pseudogene Interval_120814 chr4 150786760 150787162 + 0 NA Intergenic Intergenic -38772 ENSMUSG00000085097.1 ENSMUSG00000085097 ENSMUST00000133196 Gm13049 lincRNA Interval_158005 chr8 77869020 77869231 + 0 NA Intergenic Intergenic 61590 ENSMUSG00000087761.1 ENSMUSG00000087761 ENSMUST00000157136 Gm23981 snRNA Interval_143299 chr7 5014222 5015862 + 0 NA promoter-TSS (ENSMUSG00000061374.14) protein_coding-promoter-TSS (ENSMUSG00000061374.14) -454 ENSMUSG00000109129.1 ENSMUSG00000109129 ENSMUST00000207050 Gm44973 protein_coding Interval_41049 chr12 110814725 110815550 + 0 NA exon (ENSMUSG00000056458.16, exon 2 of 6) protein_coding-exon (ENSMUSG00000056458.16, exon 2 of 6) 25790 ENSMUSG00000056458.16 ENSMUSG00000056458 ENSMUST00000177224 Mok protein_coding Interval_142606 chr6 144224771 144225741 + 0 NA intron (ENSMUSG00000041540.16, intron 4 of 6) protein_coding-intron (ENSMUSG00000041540.16, intron 4 of 13) -15688 ENSMUSG00000041540.16 ENSMUSG00000041540 ENSMUST00000150087 Sox5 protein_coding Interval_84987 chr19 21011590 21011850 + 0 NA Intergenic Intergenic 89328 ENSMUSG00000118293.1 ENSMUSG00000118293 ENSMUST00000238088 Gm32750 antisense Interval_125184 chr5 65156942 65159060 + 0 NA intron (ENSMUSG00000054920.12, intron 5 of 9) protein_coding-intron (ENSMUSG00000054920.12, intron 6 of 10) 21699 ENSMUSG00000087748.1 ENSMUSG00000087748 ENSMUST00000157123 Gm25154 rRNA Interval_106258 chr3 94962298 94963273 + 0 NA promoter-TSS (ENSMUSG00000087660.1) antisense-promoter-TSS (ENSMUSG00000087660.1) -737 ENSMUSG00000087660.1 ENSMUSG00000087660 ENSMUST00000125186 B230398E01Rik antisense Interval_126130 chr5 77851459 77851850 + 0 NA Intergenic Intergenic 57806 ENSMUSG00000106960.1 ENSMUSG00000106960 ENSMUST00000202676 Gm42673 processed_pseudogene Interval_113029 chr4 47036776 47037597 + 0 NA intron (ENSMUSG00000066191.12, intron 8 of 15) protein_coding-intron (ENSMUSG00000066191.12, intron 8 of 14) -4412 ENSMUSG00000081561.1 ENSMUSG00000081561 ENSMUST00000119580 Gm12425 processed_pseudogene Interval_78063 chr18 7614826 7615061 + 0 NA intron (ENSMUSG00000057440.8, intron 1 of 2) protein_coding-intron (ENSMUSG00000057440.8, intron 1 of 16) 11911 ENSMUSG00000057440.8 ENSMUSG00000057440 ENSMUST00000233992 Mpp7 protein_coding Interval_151743 chr7 126369043 126370173 + 0 NA promoter-TSS (ENSMUSG00000030742.7) protein_coding-promoter-TSS (ENSMUSG00000030742.7) -67 ENSMUSG00000030742.7 ENSMUSG00000030742 ENSMUST00000206731 Lat protein_coding Interval_30801 chr11 96563720 96563975 + 0 NA intron (ENSMUSG00000057058.16, intron 4 of 7) protein_coding-intron (ENSMUSG00000057058.16, intron 4 of 11) 80065 ENSMUSG00000057058.16 ENSMUSG00000057058 ENSMUST00000123814 Skap1 protein_coding Interval_1023 chr1 14177331 14177697 + 0 NA intron (ENSMUSG00000025932.14, intron 16 of 16) protein_coding-intron (ENSMUSG00000025932.14, intron 17 of 17) -5064 ENSMUSG00000095853.1 ENSMUSG00000095853 ENSMUST00000179783 Gm22616 miRNA Interval_144498 chr7 25479423 25479642 + 0 NA intron (ENSMUSG00000053714.8, intron 4 of 6) antisense-intron (ENSMUSG00000053714.8, intron 4 of 6) -1949 ENSMUSG00000074272.10 ENSMUSG00000074272 ENSMUST00000206981 Ceacam1 protein_coding Interval_40794 chr12 108465555 108466286 + 0 NA intron (ENSMUSG00000058070.14, intron 2 of 6) protein_coding-intron (ENSMUSG00000058070.14, intron 2 of 21) -5933 ENSMUSG00000058070.14 ENSMUSG00000058070 ENSMUST00000123035 Eml1 protein_coding Interval_92936 chr2 68818405 68819670 + 0 NA Intergenic Intergenic -11980 ENSMUSG00000082836.1 ENSMUSG00000082836 ENSMUST00000119276 Gm13612 processed_pseudogene Interval_169933 chr9 103062804 103063088 + 0 NA intron (ENSMUSG00000032548.14, intron 3 of 13) protein_coding-intron (ENSMUSG00000032548.14, intron 3 of 13) 22580 ENSMUSG00000110765.1 ENSMUSG00000110765 ENSMUST00000216778 Gm47468 antisense Interval_55076 chr14 77738644 77739072 + 0 NA Intergenic Intergenic -42116 ENSMUSG00000115257.1 ENSMUSG00000115257 ENSMUST00000227970 Gm30467 lincRNA Interval_18930 chr10 93213205 93214284 + 0 NA intron (ENSMUSG00000020015.10, intron 3 of 6) protein_coding-intron (ENSMUSG00000020015.10, intron 3 of 16) -25279 ENSMUSG00000020015.10 ENSMUSG00000020015 ENSMUST00000216729 Cdk17 protein_coding Interval_96533 chr2 125429137 125429452 + 0 NA intron (ENSMUSG00000027204.13, intron 5 of 9) protein_coding-intron (ENSMUSG00000027204.13, intron 6 of 65) -75795 ENSMUSG00000053615.1 ENSMUSG00000053615 ENSMUST00000066157 Gm9913 antisense Interval_42598 chr13 16490438 16490962 + 0 NA Intergenic Intergenic 43121 ENSMUSG00000113972.1 ENSMUSG00000113972 ENSMUST00000222545 Gm48497 processed_pseudogene Interval_32992 chr11 113559188 113559433 + 0 NA TTS (ENSMUSG00000041654.15) protein_coding-TTS (ENSMUSG00000041654.15) 6469 ENSMUSG00000041654.15 ENSMUSG00000041654 ENSMUST00000123153 Slc39a11 protein_coding Interval_39399 chr12 87163729 87164156 + 0 NA TTS (ENSMUSG00000021033.11) protein_coding-TTS (ENSMUSG00000021033.11) -8456 ENSMUSG00000113918.1 ENSMUSG00000113918 ENSMUST00000221468 Gm6566 antisense Interval_21630 chr11 3337396 3338219 + 0 NA intron (ENSMUSG00000034614.14, intron 4 of 4) protein_coding-intron (ENSMUSG00000034614.14, intron 5 of 5) -6629 ENSMUSG00000053263.3 ENSMUSG00000053263 ENSMUST00000155332 Gm12592 processed_transcript Interval_101962 chr3 13470739 13473542 + 0 NA promoter-TSS (ENSMUSG00000102215.1) lincRNA-promoter-TSS (ENSMUSG00000102215.1) -311 ENSMUSG00000102215.1 ENSMUSG00000102215 ENSMUST00000194841 Gm2464 lincRNA Interval_35580 chr12 25020072 25021238 + 0 NA intron (ENSMUSG00000036333.11, intron 1 of 3) protein_coding-intron (ENSMUSG00000036333.11, intron 22 of 31) -44037 ENSMUSG00000114148.1 ENSMUSG00000114148 ENSMUST00000220747 Gm47701 lincRNA Interval_137821 chr6 82750061 82751026 + 0 NA intron (ENSMUSG00000000628.10, intron 2 of 17) protein_coding-intron (ENSMUSG00000000628.10, intron 2 of 17) -13739 ENSMUSG00000090293.1 ENSMUSG00000090293 ENSMUST00000168990 Gm17034 antisense Interval_120659 chr4 149948474 149949972 + 0 NA intron (ENSMUSG00000039911.13, intron 1 of 1) protein_coding-intron (ENSMUSG00000039911.13, intron 1 of 2) -26752 ENSMUSG00000039911.13 ENSMUSG00000039911 ENSMUST00000135896 Spsb1 protein_coding Interval_74416 chr17 50067896 50068996 + 0 NA intron (ENSMUSG00000039316.14, intron 4 of 6) protein_coding-intron (ENSMUSG00000039316.14, intron 4 of 9) -45573 ENSMUSG00000117117.1 ENSMUSG00000117117 ENSMUST00000233275 Gm49901 lincRNA Interval_118293 chr4 130101897 130103091 + 0 NA promoter-TSS (ENSMUSG00000028779.16) protein_coding-promoter-TSS (ENSMUSG00000028779.16) -64 ENSMUSG00000028779.16 ENSMUSG00000028779 ENSMUST00000030563 Pef1 protein_coding Interval_14904 chr10 40972001 40972592 + 0 NA Intergenic Intergenic -62899 ENSMUSG00000111098.1 ENSMUSG00000111098 ENSMUST00000214667 Gm48057 lincRNA Interval_49182 chr13 109230408 109230965 + 0 NA intron (ENSMUSG00000021699.17, intron 1 of 14) protein_coding-intron (ENSMUSG00000021699.17, intron 1 of 14) -94058 ENSMUSG00000076946.2 ENSMUSG00000076946 ENSMUST00000103758 Mir582 miRNA Interval_119149 chr4 135850668 135850935 + 0 NA Intergenic Intergenic -2877 ENSMUSG00000081672.1 ENSMUSG00000081672 ENSMUST00000120937 Gm13000 processed_pseudogene Interval_107944 chr3 117067470 117068406 + 0 NA intron (ENSMUSG00000028009.7, intron 3 of 8) lincRNA-intron (ENSMUSG00000028009.7, intron 3 of 8) 9827 ENSMUSG00000028009.7 ENSMUSG00000028009 ENSMUST00000029642 1700061I17Rik lincRNA Interval_51315 chr14 26352851 26353106 + 0 NA Intergenic Intergenic -11410 ENSMUSG00000021874.12 ENSMUSG00000021874 ENSMUST00000168234 4933413J09Rik lincRNA Interval_45898 chr13 58954216 58955767 + 0 NA intron (ENSMUSG00000055254.15, intron 12 of 17) protein_coding-intron (ENSMUSG00000055254.15, intron 12 of 17) 119176 ENSMUSG00000055254.15 ENSMUSG00000055254 ENSMUST00000223636 Ntrk2 protein_coding Interval_46344 chr13 64098977 64100636 + 0 NA intron (ENSMUSG00000033114.11, intron 10 of 12) protein_coding-intron (ENSMUSG00000033114.11, intron 9 of 11) -10605 ENSMUSG00000033122.14 ENSMUSG00000033122 ENSMUST00000222810 Hsd17b3 protein_coding Interval_104215 chr3 60660525 60660878 + 0 NA Intergenic Intergenic 56317 ENSMUSG00000104125.1 ENSMUSG00000104125 ENSMUST00000195434 Gm37488 TEC Interval_155563 chr8 34547217 34547602 + 0 NA Intergenic Intergenic 24091 ENSMUSG00000110015.1 ENSMUSG00000110015 ENSMUST00000211015 Gm33968 lincRNA Interval_26573 chr11 58977212 58982315 + 0 NA intron (ENSMUSG00000020455.16, intron 1 of 6) protein_coding-intron (ENSMUSG00000020455.16, intron 1 of 5) 1648 ENSMUSG00000020455.16 ENSMUSG00000020455 ENSMUST00000093061 Trim11 protein_coding Interval_151049 chr7 118169751 118171109 + 0 NA intron (ENSMUSG00000030655.15, intron 29 of 60) protein_coding-intron (ENSMUSG00000030655.15, intron 31 of 62) 16950 ENSMUSG00000065874.1 ENSMUSG00000065874 ENSMUST00000083940 Gm25683 snoRNA Interval_142904 chr6 146820369 146820794 + 0 NA exon (ENSMUSG00000040187.15, exon 7 of 15) protein_coding-exon (ENSMUSG00000040187.15, exon 7 of 15) -9943 ENSMUSG00000040187.15 ENSMUSG00000040187 ENSMUST00000204578 Arntl2 protein_coding Interval_56603 chr14 120765975 120766719 + 0 NA Intergenic Intergenic 17162 ENSMUSG00000090284.2 ENSMUSG00000090284 ENSMUST00000138893 Gm17613 lincRNA Interval_109236 chr3 138154366 138154783 + 0 NA exon (ENSMUSG00000004127.12, exon 6 of 6) protein_coding-exon (ENSMUSG00000004127.12, exon 6 of 6) -9606 ENSMUSG00000028158.14 ENSMUSG00000028158 ENSMUST00000197680 Mttp protein_coding Interval_172242 chrX 11745949 11746761 + 0 NA Intergenic Intergenic -62231 ENSMUSG00000080811.1 ENSMUSG00000080811 ENSMUST00000117403 Gm14513 processed_pseudogene Interval_24859 chr11 40536116 40536864 + 0 NA Intergenic Intergenic 30892 ENSMUSG00000081097.1 ENSMUSG00000081097 ENSMUST00000119170 Gm12135 processed_pseudogene Interval_7265 chr1 128321956 128322553 + 0 NA intron (ENSMUSG00000026354.8, intron 1 of 16) protein_coding-intron (ENSMUSG00000026354.8, intron 1 of 16) 23788 ENSMUSG00000026355.11 ENSMUSG00000026355 ENSMUST00000188755 Mcm6 protein_coding Interval_33578 chr11 117325421 117326769 + 0 NA promoter-TSS (ENSMUSG00000059248.13) protein_coding-promoter-TSS (ENSMUSG00000059248.13) -6333 ENSMUSG00000059248.13 ENSMUSG00000059248 ENSMUST00000129387 Septin9 protein_coding Interval_120542 chr4 149240980 149241488 + 0 NA intron (ENSMUSG00000063077.15, intron 20 of 20) protein_coding-intron (ENSMUSG00000063077.15, intron 20 of 20) 66458 ENSMUSG00000063077.15 ENSMUSG00000063077 ENSMUST00000132072 Kif1b protein_coding Interval_27696 chr11 69535079 69535566 + 0 NA intron (ENSMUSG00000005237.14, intron 3 of 13) protein_coding-intron (ENSMUSG00000005237.14, intron 2 of 84) -16933 ENSMUSG00000005237.14 ENSMUSG00000005237 ENSMUST00000154985 Dnah2 protein_coding Interval_148447 chr7 81324135 81324384 + 0 NA intron (ENSMUSG00000025584.17, intron 18 of 21) protein_coding-intron (ENSMUSG00000025584.17, intron 18 of 21) 17566 ENSMUSG00000025584.17 ENSMUSG00000025584 ENSMUST00000130494 Pde8a protein_coding Interval_96151 chr2 120084657 120085323 + 0 NA intron (ENSMUSG00000074899.6, intron 2 of 65) protein_coding-intron (ENSMUSG00000074899.6, intron 2 of 65) 688 ENSMUSG00000074899.6 ENSMUSG00000074899 ENSMUST00000156159 Sptbn5 protein_coding Interval_61668 chr15 83283807 83285166 + 0 NA Intergenic Intergenic -26389 ENSMUSG00000116416.1 ENSMUSG00000116416 ENSMUST00000230161 Gm32886 processed_pseudogene Interval_55922 chr14 102469117 102469652 + 0 NA Intergenic Intergenic 32361 ENSMUSG00000115696.1 ENSMUSG00000115696 ENSMUST00000228104 Gm49292 lincRNA Interval_106945 chr3 102112536 102112727 + 0 NA intron (ENSMUSG00000027861.13, intron 2 of 8) protein_coding-intron (ENSMUSG00000027861.13, intron 2 of 10) -17307 ENSMUSG00000105342.1 ENSMUSG00000105342 ENSMUST00000196994 Gm43244 sense_intronic Interval_107250 chr3 104952995 104954147 + 0 NA intron (ENSMUSG00000027840.5, intron 2 of 4) protein_coding-intron (ENSMUSG00000027840.5, intron 2 of 4) 4802 ENSMUSG00000105925.1 ENSMUSG00000105925 ENSMUST00000200502 Gm43846 sense_intronic Interval_79430 chr18 31853231 31854129 + 0 NA intron (ENSMUSG00000024400.16, intron 7 of 21) protein_coding-intron (ENSMUSG00000024400.16, intron 7 of 21) -33161 ENSMUSG00000091561.3 ENSMUSG00000091561 ENSMUST00000165131 Gm6665 processed_pseudogene Interval_20440 chr10 117639229 117640410 + 0 NA intron (ENSMUSG00000020183.11, intron 2 of 3) protein_coding-intron (ENSMUSG00000020183.11, intron 2 of 8) 22569 ENSMUSG00000096357.1 ENSMUSG00000096357 ENSMUST00000178844 Gm25709 snRNA Interval_49506 chr13 112501285 112501667 + 0 NA TTS (ENSMUSG00000021756.12) protein_coding-TTS (ENSMUSG00000021756.12) 26430 ENSMUSG00000021756.12 ENSMUSG00000021756 ENSMUST00000184949 Il6st protein_coding Interval_166587 chr9 61111285 61112967 + 0 NA intron (ENSMUSG00000111354.1, intron 3 of 6) lincRNA-intron (ENSMUSG00000111354.1, intron 3 of 6) 1740 ENSMUSG00000111169.1 ENSMUSG00000111169 ENSMUST00000215586 Gm34004 lincRNA Interval_119413 chr4 137529370 137529816 + 0 NA TTS (ENSMUSG00000028763.18) protein_coding-TTS (ENSMUSG00000028763.18) 7134 ENSMUSG00000028763.18 ENSMUSG00000028763 ENSMUST00000155648 Hspg2 protein_coding Interval_108106 chr3 121531893 121532674 + 0 NA exon (ENSMUSG00000039865.8, exon 1 of 15) protein_coding-exon (ENSMUSG00000039865.8, exon 1 of 15) 654 ENSMUSG00000097124.2 ENSMUSG00000097124 ENSMUST00000180804 A530020G20Rik antisense Interval_33065 chr11 114112551 114113479 + 0 NA Intergenic Intergenic 21609 ENSMUSG00000086760.1 ENSMUSG00000086760 ENSMUST00000129365 1700025D23Rik lincRNA Interval_129732 chr5 122011302 122012286 + 0 NA intron (ENSMUSG00000042589.18, intron 1 of 6) protein_coding-intron (ENSMUSG00000042589.18, intron 2 of 22) -13536 ENSMUSG00000105795.1 ENSMUSG00000105795 ENSMUST00000198001 Gm3970 antisense Interval_34737 chr12 9052002 9053373 + 0 NA Intergenic Intergenic 22660 ENSMUSG00000066637.2 ENSMUSG00000066637 ENSMUST00000219470 Ttc32 protein_coding Interval_26521 chr11 58350667 58350991 + 0 NA Intergenic Intergenic 19554 ENSMUSG00000013646.17 ENSMUSG00000013646 ENSMUST00000127119 Sh3bp5l protein_coding Interval_72321 chr17 29189006 29189597 + 0 NA intron (ENSMUSG00000024008.16, intron 9 of 13) protein_coding-intron (ENSMUSG00000024008.16, intron 8 of 20) -29796 ENSMUSG00000024008.16 ENSMUSG00000024008 ENSMUST00000126755 Cpne5 protein_coding Interval_136535 chr6 55245430 55245891 + 0 NA intron (ENSMUSG00000038022.11, intron 5 of 10) protein_coding-intron (ENSMUSG00000038022.11, intron 5 of 17) 42277 ENSMUSG00000038022.11 ENSMUSG00000038022 ENSMUST00000203225 Mindy4 protein_coding Interval_150035 chr7 105256377 105256911 + 0 NA Intergenic Intergenic -16208 ENSMUSG00000073908.5 ENSMUSG00000073908 ENSMUST00000098154 Olfr687 transcribed_unprocessed_pseudogene Interval_8268 chr1 136856257 136856629 + 0 NA intron (ENSMUSG00000026398.14, intron 8 of 8) protein_coding-intron (ENSMUSG00000026398.14, intron 8 of 8) -57484 ENSMUSG00000104261.1 ENSMUSG00000104261 ENSMUST00000195232 Gm17781 processed_pseudogene Interval_9371 chr1 156631136 156631367 + 0 NA intron (ENSMUSG00000026596.13, intron 5 of 12) protein_coding-intron (ENSMUSG00000026596.13, intron 5 of 11) 15328 ENSMUSG00000026596.13 ENSMUSG00000026596 ENSMUST00000190749 Abl2 protein_coding Interval_48586 chr13 100523180 100523864 + 0 NA intron (ENSMUSG00000021638.12, intron 4 of 8) protein_coding-intron (ENSMUSG00000021638.12, intron 4 of 8) 28959 ENSMUSG00000021638.12 ENSMUSG00000021638 ENSMUST00000159515 Ocln protein_coding Interval_40526 chr12 105511088 105511322 + 0 NA Intergenic Intergenic -2275 ENSMUSG00000113535.1 ENSMUSG00000113535 ENSMUST00000223443 AU015791 lincRNA Interval_155303 chr8 31096207 31097429 + 0 NA TTS (ENSMUSG00000039661.14) protein_coding-TTS (ENSMUSG00000039661.14) 7180 ENSMUSG00000039661.14 ENSMUSG00000039661 ENSMUST00000160700 Dusp26 protein_coding Interval_129340 chr5 119300040 119300345 + 0 NA Intergenic Intergenic 2947 ENSMUSG00000084548.1 ENSMUSG00000084548 ENSMUST00000122599 n-R5s175 rRNA Interval_52060 chr14 34952119 34952405 + 0 NA intron (ENSMUSG00000041078.7, intron 3 of 15) protein_coding-intron (ENSMUSG00000041078.7, intron 3 of 15) 57653 ENSMUSG00000065481.1 ENSMUSG00000065481 ENSMUST00000083547 Mir346 miRNA Interval_165287 chr9 46035273 46036219 + 0 NA intron (ENSMUSG00000034135.15, intron 1 of 24) protein_coding-intron (ENSMUSG00000034135.15, intron 1 of 22) -50963 ENSMUSG00000003131.7 ENSMUSG00000003131 ENSMUST00000214996 Pafah1b2 protein_coding Interval_118093 chr4 128919057 128921062 + 0 NA Intergenic Intergenic -15946 ENSMUSG00000085961.1 ENSMUSG00000085961 ENSMUST00000154515 Gm15904 antisense Interval_138119 chr6 85296096 85296328 + 0 NA intron (ENSMUSG00000033720.12, intron 3 of 3) protein_coding-intron (ENSMUSG00000033720.12, intron 3 of 13) 37210 ENSMUSG00000033720.12 ENSMUSG00000033720 ENSMUST00000203035 Sfxn5 protein_coding Interval_139364 chr6 99481422 99481934 + 0 NA intron (ENSMUSG00000030068.4, intron 1 of 1) protein_coding-intron (ENSMUSG00000030068.4, intron 3 of 5) 3024 ENSMUSG00000088699.1 ENSMUSG00000088699 ENSMUST00000158074 Gm22328 miRNA Interval_31591 chr11 101562066 101564073 + 0 NA intron (ENSMUSG00000017119.19, intron 1 of 2) protein_coding-intron (ENSMUSG00000017119.19, intron 4 of 20) 3550 ENSMUSG00000017119.19 ENSMUSG00000017119 ENSMUST00000141170 Nbr1 protein_coding Interval_14419 chr10 33375251 33376450 + 0 NA intron (ENSMUSG00000019787.9, intron 21 of 37) protein_coding-intron (ENSMUSG00000019787.9, intron 21 of 37) -36226 ENSMUSG00000112521.1 ENSMUSG00000112521 ENSMUST00000218403 Gm29884 processed_pseudogene Interval_127737 chr5 107219680 107220456 + 0 NA intron (ENSMUSG00000029287.14, intron 2 of 6) protein_coding-intron (ENSMUSG00000029287.14, intron 2 of 16) -21555 ENSMUSG00000084218.1 ENSMUSG00000084218 ENSMUST00000118220 Gm8145 processed_pseudogene Interval_120029 chr4 141436134 141436307 + 0 NA promoter-TSS (ENSMUSG00000070637.2) protein_coding-promoter-TSS (ENSMUSG00000070637.2) -115 ENSMUSG00000070637.2 ENSMUSG00000070637 ENSMUST00000094544 Srarp protein_coding Interval_81842 chr18 65199967 65200860 + 0 NA intron (ENSMUSG00000024589.18, intron 22 of 28) protein_coding-intron (ENSMUSG00000024589.18, intron 23 of 29) -43874 ENSMUSG00000118017.1 ENSMUSG00000118017 ENSMUST00000235231 Gm29966 lincRNA Interval_44312 chr13 43559571 43561260 + 0 NA promoter-TSS (ENSMUSG00000021371.5) protein_coding-promoter-TSS (ENSMUSG00000021371.5) -224 ENSMUSG00000021371.5 ENSMUSG00000021371 ENSMUST00000223353 Mcur1 protein_coding Interval_95397 chr2 108034483 108035049 + 0 NA Intergenic Intergenic 45276 ENSMUSG00000077411.1 ENSMUSG00000077411 ENSMUST00000104223 Gm23749 snoRNA Interval_123035 chr5 28955187 28955445 + 0 NA Intergenic Intergenic -241271 ENSMUSG00000029130.12 ENSMUSG00000029130 ENSMUST00000163050 Rnf32 protein_coding Interval_141784 chr6 134454031 134454357 + 0 NA intron (ENSMUSG00000030201.15, intron 9 of 10) protein_coding-intron (ENSMUSG00000030201.15, intron 21 of 22) 13567 ENSMUSG00000030201.15 ENSMUSG00000030201 ENSMUST00000203235 Lrp6 protein_coding Interval_2815 chr1 45816795 45817120 + 0 NA intron (ENSMUSG00000025995.16, intron 13 of 19) protein_coding-intron (ENSMUSG00000025995.16, intron 13 of 20) -5601 ENSMUSG00000025995.16 ENSMUSG00000025995 ENSMUST00000186651 Wdr75 protein_coding Interval_105534 chr3 87477936 87479952 + 0 NA intron (ENSMUSG00000048031.15, intron 11 of 11) protein_coding-intron (ENSMUSG00000048031.15, intron 11 of 11) 43171 ENSMUSG00000048031.15 ENSMUSG00000048031 ENSMUST00000178261 Fcrl5 protein_coding Interval_118566 chr4 132535482 132536148 + 0 NA promoter-TSS (ENSMUSG00000054405.14) protein_coding-promoter-TSS (ENSMUSG00000054405.14) -2327 ENSMUSG00000054428.12 ENSMUSG00000054428 ENSMUST00000145795 Atpif1 protein_coding Interval_21252 chr10 127481112 127481788 + 0 NA exon (ENSMUSG00000025404.15, exon 1 of 3) protein_coding-exon (ENSMUSG00000025404.15, exon 1 of 3) 21915 ENSMUSG00000025404.15 ENSMUSG00000025404 ENSMUST00000171426 R3hdm2 protein_coding Interval_150679 chr7 113267739 113268854 + 0 NA intron (ENSMUSG00000055116.8, intron 3 of 20) protein_coding-intron (ENSMUSG00000055116.8, intron 2 of 19) 27041 ENSMUSG00000109959.1 ENSMUSG00000109959 ENSMUST00000211342 Gm45355 antisense Interval_125823 chr5 74703820 74704948 + 0 NA intron (ENSMUSG00000085657.7, intron 1 of 2) antisense-intron (ENSMUSG00000085657.7, intron 1 of 2) 1786 ENSMUSG00000085657.7 ENSMUSG00000085657 ENSMUST00000155864 Gm15984 antisense Interval_1587 chr1 28287488 28288253 + 0 NA Intergenic Intergenic -282048 ENSMUSG00000103241.1 ENSMUSG00000103241 ENSMUST00000193585 Gm38089 TEC Interval_90838 chr2 32908182 32909147 + 0 NA intron (ENSMUSG00000026796.16, intron 2 of 2) protein_coding-intron (ENSMUSG00000026796.16, intron 2 of 13) -6047 ENSMUSG00000026796.16 ENSMUSG00000026796 ENSMUST00000151607 Fam129b protein_coding Interval_19157 chr10 95215144 95215647 + 0 NA intron (ENSMUSG00000045867.10, intron 2 of 2) protein_coding-intron (ENSMUSG00000045867.10, intron 2 of 2) 55034 ENSMUSG00000112682.1 ENSMUSG00000112682 ENSMUST00000220149 Gm48874 TEC Interval_163677 chr9 24064176 24064443 + 0 NA Intergenic Intergenic 27593 ENSMUSG00000111135.1 ENSMUSG00000111135 ENSMUST00000213615 Gm47670 processed_pseudogene Interval_142401 chr6 141583898 141585521 + 0 NA Intergenic Intergenic -49749 ENSMUSG00000030236.10 ENSMUSG00000030236 ENSMUST00000160179 Slco1b2 protein_coding Interval_23019 chr11 18985664 18986706 + 0 NA TTS (ENSMUSG00000020160.18) protein_coding-TTS (ENSMUSG00000020160.18) 20288 ENSMUSG00000103828.1 ENSMUSG00000103828 ENSMUST00000193315 2610001A08Rik TEC Interval_24158 chr11 30792263 30793474 + 0 NA intron (ENSMUSG00000040850.17, intron 3 of 4) protein_coding-intron (ENSMUSG00000040850.17, intron 3 of 46) 29802 ENSMUSG00000086986.3 ENSMUSG00000086986 ENSMUST00000121892 Gm12103 processed_pseudogene Interval_88625 chr2 7094706 7095486 + 0 NA intron (ENSMUSG00000002107.18, intron 2 of 11) protein_coding-intron (ENSMUSG00000002107.18, intron 2 of 15) -18682 ENSMUSG00000065824.1 ENSMUSG00000065824 ENSMUST00000083890 Gm26315 misc_RNA Interval_20 GL456211.1 102375 102792 + 0 NA NA NA NA NA Interval_112729 chr4 44452354 44452626 + 0 NA Intergenic Intergenic -39895 ENSMUSG00000077587.1 ENSMUSG00000077587 ENSMUST00000104399 Gm24376 snoRNA Interval_21375 chr10 128246810 128247913 + 0 NA promoter-TSS (ENSMUSG00000039994.15) protein_coding-promoter-TSS (ENSMUSG00000039994.15) 4953 ENSMUSG00000039994.15 ENSMUSG00000039994 ENSMUST00000129147 Timeless protein_coding Interval_70619 chr17 12382202 12382905 + 0 NA intron (ENSMUSG00000059481.5, intron 2 of 4) protein_coding-intron (ENSMUSG00000059481.5, intron 2 of 18) 3894 ENSMUSG00000059481.5 ENSMUSG00000059481 ENSMUST00000232767 Plg protein_coding Interval_114974 chr4 87953380 87953596 + 0 NA intron (ENSMUSG00000028496.17, intron 2 of 4) protein_coding-intron (ENSMUSG00000028496.17, intron 2 of 10) -80013 ENSMUSG00000084809.1 ENSMUSG00000084809 ENSMUST00000130576 Gm12631 antisense Interval_50151 chr14 8300029 8300712 + 0 NA intron (ENSMUSG00000021750.16, intron 2 of 2) protein_coding-intron (ENSMUSG00000021750.16, intron 2 of 3) 9425 ENSMUSG00000021750.16 ENSMUSG00000021750 ENSMUST00000137133 Fam107a protein_coding Interval_117354 chr4 123194498 123194974 + 0 NA TTS (ENSMUSG00000046093.9) protein_coding-TTS (ENSMUSG00000046093.9) -6768 ENSMUSG00000054958.6 ENSMUSG00000054958 ENSMUST00000068262 Nt5c1a protein_coding Interval_138244 chr6 86565391 86565634 + 0 NA intron (ENSMUSG00000097048.7, intron 1 of 2) antisense-intron (ENSMUSG00000097048.7, intron 1 of 2) 8649 ENSMUSG00000093162.1 ENSMUSG00000093162 ENSMUST00000175421 Gm22184 miRNA Interval_25103 chr11 43960016 43960929 + 0 NA intron (ENSMUSG00000087172.1, intron 1 of 6) lincRNA-intron (ENSMUSG00000087172.1, intron 1 of 6) 1383 ENSMUSG00000087172.1 ENSMUSG00000087172 ENSMUST00000148504 Gm12153 lincRNA Interval_73673 chr17 42658406 42659723 + 0 NA intron (ENSMUSG00000023918.12, intron 9 of 9) protein_coding-intron (ENSMUSG00000023918.12, intron 9 of 9) 33198 ENSMUSG00000023918.12 ENSMUSG00000023918 ENSMUST00000164524 Adgrf4 protein_coding Interval_87694 chr19 55098539 55100021 + 0 NA promoter-TSS (ENSMUSG00000118099.1) antisense-promoter-TSS (ENSMUSG00000118099.1) -222 ENSMUSG00000118099.1 ENSMUSG00000118099 ENSMUST00000237370 Gm31356 antisense Interval_12293 chr1 191461847 191462312 + 0 NA intron (ENSMUSG00000103114.1, intron 2 of 5) lincRNA-intron (ENSMUSG00000103114.1, intron 2 of 5) 2969 ENSMUSG00000103114.1 ENSMUSG00000103114 ENSMUST00000192778 Gm32200 lincRNA Interval_114263 chr4 70307105 70307948 + 0 NA intron (ENSMUSG00000039298.16, intron 14 of 36) protein_coding-intron (ENSMUSG00000039298.16, intron 11 of 33) -58153 ENSMUSG00000080902.1 ENSMUSG00000080902 ENSMUST00000120944 Ywhaq-ps3 transcribed_processed_pseudogene Interval_90488 chr2 30756704 30759456 + 0 NA Intergenic Intergenic 36870 ENSMUSG00000093091.1 ENSMUSG00000093091 ENSMUST00000175350 Mir3089 miRNA Interval_79560 chr18 33777448 33777654 + 0 NA Intergenic Intergenic -17388 ENSMUSG00000087590.2 ENSMUSG00000087590 ENSMUST00000179138 Epb41l4aos lincRNA Interval_82806 chr18 77148363 77148568 + 0 NA intron (ENSMUSG00000025423.16, intron 13 of 14) protein_coding-intron (ENSMUSG00000025423.16, intron 12 of 13) 37898 ENSMUSG00000073532.3 ENSMUSG00000073532 ENSMUST00000097520 Gm7276 bidirectional_promoter_lncRNA Interval_139276 chr6 97791429 97792105 + 0 NA Intergenic Intergenic 1255 ENSMUSG00000089464.1 ENSMUSG00000089464 ENSMUST00000158839 Gm23703 snoRNA Interval_150094 chr7 105778577 105778761 + 0 NA intron (ENSMUSG00000036862.15, intron 1 of 6) protein_coding-intron (ENSMUSG00000036862.15, intron 1 of 20) 8883 ENSMUSG00000036862.15 ENSMUSG00000036862 ENSMUST00000154659 Dchs1 protein_coding Interval_158860 chr8 87459224 87460206 + 0 NA promoter-TSS (ENSMUSG00000098295.1) lincRNA-promoter-TSS (ENSMUSG00000098295.1) -754 ENSMUSG00000098295.1 ENSMUSG00000098295 ENSMUST00000183446 Gm19872 lincRNA Interval_121989 chr5 13079253 13079461 + 0 NA Intergenic Intergenic -1471 ENSMUSG00000104577.1 ENSMUSG00000104577 ENSMUST00000196100 Gm6641 processed_pseudogene Interval_114163 chr4 65516212 65516576 + 0 NA intron (ENSMUSG00000028373.16, intron 18 of 21) protein_coding-intron (ENSMUSG00000028373.16, intron 19 of 22) -88855 ENSMUSG00000051675.13 ENSMUSG00000051675 ENSMUST00000156922 Trim32 protein_coding Interval_93750 chr2 76586041 76587082 + 0 NA intron (ENSMUSG00000042359.18, intron 13 of 20) protein_coding-intron (ENSMUSG00000042359.18, intron 20 of 26) 38221 ENSMUSG00000042359.18 ENSMUSG00000042359 ENSMUST00000124601 Osbpl6 protein_coding Interval_62325 chr15 90192388 90193571 + 0 NA Intergenic Intergenic -31370 ENSMUSG00000075470.2 ENSMUSG00000075470 ENSMUST00000231200 Alg10b protein_coding Interval_6965 chr1 121440587 121441860 + 0 NA intron (ENSMUSG00000026339.18, intron 3 of 5) protein_coding-intron (ENSMUSG00000026339.18, intron 3 of 23) 10148 ENSMUSG00000026339.18 ENSMUSG00000026339 ENSMUST00000152959 Ccdc93 protein_coding Interval_23067 chr11 19607054 19608282 + 0 NA Intergenic Intergenic 20393 ENSMUSG00000086911.1 ENSMUSG00000086911 ENSMUST00000146531 Gm12027 lincRNA Interval_160290 chr8 107777060 107777717 + 0 NA Intergenic Intergenic -63569 ENSMUSG00000095727.1 ENSMUSG00000095727 ENSMUST00000178119 Gm23646 miRNA Interval_137926 chr6 83418548 83418796 + 0 NA exon (ENSMUSG00000108780.1, exon 1 of 1) TEC-exon (ENSMUSG00000108780.1, exon 1 of 1) 2320 ENSMUSG00000108780.1 ENSMUSG00000108780 ENSMUST00000206080 5430434F05Rik TEC Interval_23133 chr11 20104276 20104685 + 0 NA intron (ENSMUSG00000020152.7, intron 1 of 1) protein_coding-intron (ENSMUSG00000020152.7, intron 1 of 8) 8429 ENSMUSG00000020152.7 ENSMUSG00000020152 ENSMUST00000134779 Actr2 protein_coding Interval_42909 chr13 21275024 21276985 + 0 NA Intergenic Intergenic 16727 ENSMUSG00000004344.12 ENSMUSG00000004344 ENSMUST00000110491 Gpx5 protein_coding Interval_44694 chr13 47224291 47226683 + 0 NA intron (ENSMUSG00000038068.15, intron 3 of 7) protein_coding-intron (ENSMUSG00000038068.15, intron 3 of 7) 31662 ENSMUSG00000038068.15 ENSMUSG00000038068 ENSMUST00000110111 Rnf144b protein_coding Interval_1868 chr1 34206877 34207125 + 0 NA intron (ENSMUSG00000026131.20, intron 30 of 83) protein_coding-intron (ENSMUSG00000026131.20, intron 45 of 97) -28555 ENSMUSG00000096992.3 ENSMUSG00000096992 ENSMUST00000187268 Gm26788 processed_transcript Interval_16866 chr10 69352132 69353372 + 0 NA intron (ENSMUSG00000019942.13, intron 1 of 8) protein_coding-intron (ENSMUSG00000019942.13, intron 1 of 7) -1922 ENSMUSG00000019942.13 ENSMUSG00000019942 ENSMUST00000124054 Cdk1 protein_coding Interval_130806 chr5 130811319 130812190 + 0 NA intron (ENSMUSG00000060371.12, intron 4 of 5) protein_coding-intron (ENSMUSG00000060371.12, intron 5 of 6) 29053 ENSMUSG00000088972.2 ENSMUSG00000088972 ENSMUST00000158347 Gm23761 snRNA Interval_92743 chr2 65012504 65012695 + 0 NA intron (ENSMUSG00000026888.14, intron 2 of 13) protein_coding-intron (ENSMUSG00000026888.14, intron 2 of 13) -36830 ENSMUSG00000026888.14 ENSMUSG00000026888 ENSMUST00000146807 Grb14 protein_coding Interval_137094 chr6 67303275 67303544 + 0 NA intron (ENSMUSG00000018341.12, intron 6 of 9) protein_coding-intron (ENSMUSG00000018341.12, intron 12 of 15) 36285 ENSMUSG00000018341.12 ENSMUSG00000018341 ENSMUST00000018485 Il12rb2 protein_coding Interval_78740 chr18 20042453 20043380 + 0 NA intron (ENSMUSG00000024331.11, intron 10 of 17) protein_coding-intron (ENSMUSG00000024331.11, intron 9 of 16) -4777 ENSMUSG00000024331.11 ENSMUSG00000024331 ENSMUST00000128464 Dsc2 protein_coding Interval_56726 chr14 121675283 121676779 + 0 NA intron (ENSMUSG00000025558.19, intron 2 of 55) protein_coding-intron (ENSMUSG00000025558.19, intron 2 of 53) 62830 ENSMUSG00000025558.19 ENSMUSG00000025558 ENSMUST00000238406 Dock9 protein_coding Interval_114200 chr4 66990625 66990880 + 0 NA Intergenic Intergenic 162550 ENSMUSG00000039005.13 ENSMUSG00000039005 ENSMUST00000147008 Tlr4 protein_coding Interval_17730 chr10 79793255 79795019 + 0 NA exon (ENSMUSG00000112828.1, exon 2 of 2) antisense-exon (ENSMUSG00000112828.1, exon 2 of 2) 519 ENSMUSG00000112828.1 ENSMUSG00000112828 ENSMUST00000219552 Gm48495 antisense Interval_9805 chr1 162545688 162546236 + 0 NA TTS (ENSMUSG00000026694.19) protein_coding-TTS (ENSMUSG00000026694.19) 2567 ENSMUSG00000026694.19 ENSMUSG00000026694 ENSMUST00000195027 Eef1aknmt protein_coding Interval_159234 chr8 92028228 92028723 + 0 NA intron (ENSMUSG00000101613.1, intron 1 of 3) lincRNA-intron (ENSMUSG00000101613.1, intron 1 of 3) 4033 ENSMUSG00000101613.1 ENSMUSG00000101613 ENSMUST00000190257 Gm28516 lincRNA Interval_167306 chr9 67189906 67190172 + 0 NA intron (ENSMUSG00000111556.1, intron 2 of 2) lincRNA-intron (ENSMUSG00000111556.1, intron 2 of 2) 46687 ENSMUSG00000076379.2 ENSMUSG00000076379 ENSMUST00000102424 Mir190a miRNA Interval_132909 chr5 148687280 148687565 + 0 NA Intergenic Intergenic -24044 ENSMUSG00000106733.1 ENSMUSG00000106733 ENSMUST00000200820 Gm36186 lincRNA Interval_30016 chr11 88708351 88709337 + 0 NA intron (ENSMUSG00000069769.13, intron 5 of 7) protein_coding-intron (ENSMUSG00000069769.13, intron 5 of 13) -9801 ENSMUSG00000087574.1 ENSMUSG00000087574 ENSMUST00000125967 C030037D09Rik lincRNA Interval_66904 chr16 38434270 38435550 + 0 NA Intergenic Intergenic -17116 ENSMUSG00000002847.7 ENSMUSG00000002847 ENSMUST00000232224 Pla1a protein_coding Interval_33718 chr11 118073209 118074235 + 0 NA exon (ENSMUSG00000033987.16, exon 47 of 81) protein_coding-exon (ENSMUSG00000033987.16, exon 47 of 81) 15472 ENSMUSG00000033987.16 ENSMUSG00000033987 ENSMUST00000018719 Dnah17 protein_coding Interval_123071 chr5 29403312 29403626 + 0 NA Intergenic Intergenic 24770 ENSMUSG00000097561.1 ENSMUSG00000097561 ENSMUST00000181005 4632411P08Rik lincRNA Interval_5618 chr1 90257896 90259196 + 0 NA intron (ENSMUSG00000101951.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000101951.1, intron 1 of 1) 1574 ENSMUSG00000101951.1 ENSMUSG00000101951 ENSMUST00000187649 Gm28721 lincRNA Interval_115376 chr4 98331901 98332762 + 0 NA TTS (ENSMUSG00000046683.16) antisense-TTS (ENSMUSG00000046683.16) 10883 ENSMUSG00000046683.16 ENSMUSG00000046683 ENSMUST00000180374 0610025J13Rik antisense Interval_17652 chr10 78493372 78493693 + 0 NA exon (ENSMUSG00000112842.2, exon 8 of 10) transcribed_unprocessed_pseudogene-exon (ENSMUSG00000112842.2, exon 8 of 10) -5690 ENSMUSG00000055704.4 ENSMUSG00000055704 ENSMUST00000069431 Gm9978 TEC Interval_107593 chr3 108772259 108772922 + 0 NA intron (ENSMUSG00000049565.16, intron 2 of 2) protein_coding-intron (ENSMUSG00000049565.16, intron 8 of 9) 20064 ENSMUSG00000049565.16 ENSMUSG00000049565 ENSMUST00000147916 Aknad1 protein_coding Interval_122149 chr5 18311060 18311387 + 0 NA intron (ENSMUSG00000057614.6, intron 1 of 7) protein_coding-intron (ENSMUSG00000057614.6, intron 1 of 7) -39125 ENSMUSG00000104540.1 ENSMUSG00000104540 ENSMUST00000198905 Gm3527 processed_pseudogene Interval_145658 chr7 36888508 36889719 + 0 NA Intergenic Intergenic -137640 ENSMUSG00000089273.1 ENSMUSG00000089273 ENSMUST00000158648 Gm24550 misc_RNA Interval_10771 chr1 174536904 174537627 + 0 NA intron (ENSMUSG00000028354.13, intron 1 of 2) protein_coding-intron (ENSMUSG00000028354.13, intron 2 of 17) -72544 ENSMUSG00000028354.13 ENSMUSG00000028354 ENSMUST00000193905 Fmn2 protein_coding Interval_39874 chr12 99264307 99264650 + 0 NA intron (ENSMUSG00000033713.12, intron 1 of 3) protein_coding-intron (ENSMUSG00000033713.12, intron 4 of 5) 18807 ENSMUSG00000093419.1 ENSMUSG00000093419 ENSMUST00000177490 Gm19898 processed_pseudogene Interval_159880 chr8 104580038 104581268 + 0 NA Intergenic Intergenic -10798 ENSMUSG00000048371.8 ENSMUSG00000048371 ENSMUST00000059588 Pdp2 protein_coding Interval_92503 chr2 60169751 60170223 + 0 NA intron (ENSMUSG00000026987.16, intron 1 of 3) protein_coding-intron (ENSMUSG00000026987.16, intron 1 of 3) 35932 ENSMUSG00000082330.1 ENSMUSG00000082330 ENSMUST00000119390 Ldha-ps processed_pseudogene Interval_48155 chr13 96712030 96712603 + 0 NA Intergenic Intergenic -34193 ENSMUSG00000113351.1 ENSMUSG00000113351 ENSMUST00000221591 Gm48575 processed_pseudogene Interval_110853 chr4 9002567 9002909 + 0 NA Intergenic Intergenic 61479 ENSMUSG00000083786.1 ENSMUSG00000083786 ENSMUST00000119493 Rps18-ps2 processed_pseudogene Interval_111204 chr4 14814418 14814732 + 0 NA intron (ENSMUSG00000040550.17, intron 5 of 6) protein_coding-intron (ENSMUSG00000040550.17, intron 5 of 6) 12012 ENSMUSG00000040550.17 ENSMUSG00000040550 ENSMUST00000151012 Otud6b protein_coding Interval_101950 chr3 12908193 12909109 + 0 NA Intergenic Intergenic -15237 ENSMUSG00000103950.1 ENSMUSG00000103950 ENSMUST00000192577 Gm8939 processed_pseudogene Interval_98543 chr2 153124370 153124744 + 0 NA intron (ENSMUSG00000003283.15, intron 2 of 12) protein_coding-intron (ENSMUSG00000003283.15, intron 2 of 12) 16089 ENSMUSG00000003283.15 ENSMUSG00000003283 ENSMUST00000003370 Hck protein_coding Interval_152675 chr7 136120773 136121648 + 0 NA Intergenic Intergenic 52086 ENSMUSG00000110396.1 ENSMUSG00000110396 ENSMUST00000209653 Gm36737 lincRNA Interval_110395 chr3 157709752 157710200 + 0 NA Intergenic Intergenic 16432 ENSMUSG00000106632.1 ENSMUSG00000106632 ENSMUST00000199819 Gm33466 lincRNA Interval_161267 chr8 119403717 119404137 + 0 NA intron (ENSMUSG00000074064.6, intron 2 of 3) protein_coding-intron (ENSMUSG00000074064.6, intron 3 of 4) 9029 ENSMUSG00000074064.6 ENSMUSG00000074064 ENSMUST00000145121 Mlycd protein_coding Interval_29678 chr11 85989683 85990706 + 0 NA Intergenic Intergenic 39699 ENSMUSG00000081632.1 ENSMUSG00000081632 ENSMUST00000118790 Gm11443 processed_pseudogene Interval_163996 chr9 30597012 30598441 + 0 NA Intergenic Intergenic 34861 ENSMUSG00000111413.1 ENSMUSG00000111413 ENSMUST00000216883 Gm47716 lincRNA Interval_53564 chr14 59337960 59338274 + 0 NA intron (ENSMUSG00000091649.3, intron 2 of 8) protein_coding-intron (ENSMUSG00000091649.3, intron 2 of 8) 3234 ENSMUSG00000091649.3 ENSMUSG00000091649 ENSMUST00000166121 Phf11b protein_coding Interval_108581 chr3 129265788 129266322 + 0 NA Intergenic Intergenic -19214 ENSMUSG00000106417.1 ENSMUSG00000106417 ENSMUST00000198498 Gm42628 processed_pseudogene Interval_154243 chr8 13694963 13695206 + 0 NA Intergenic Intergenic -10883 ENSMUSG00000090336.5 ENSMUSG00000090336 ENSMUST00000208283 Cfap97d2 protein_coding Interval_65533 chr16 23107080 23109062 + 0 NA promoter-TSS (ENSMUSG00000022884.16) protein_coding-promoter-TSS (ENSMUSG00000022884.16) 312 ENSMUSG00000022884.16 ENSMUSG00000022884 ENSMUST00000144493 Eif4a2 protein_coding Interval_50378 chr14 12233366 12233595 + 0 NA intron (ENSMUSG00000021745.14, intron 28 of 29) protein_coding-intron (ENSMUSG00000021745.14, intron 28 of 29) -50496 ENSMUSG00000114378.1 ENSMUSG00000114378 ENSMUST00000225871 Gm49355 protein_coding Interval_142800 chr6 145797799 145798009 + 0 NA intron (ENSMUSG00000030259.12, intron 1 of 2) protein_coding-intron (ENSMUSG00000030259.12, intron 1 of 4) 47333 ENSMUSG00000030259.12 ENSMUSG00000030259 ENSMUST00000058538 Rassf8 protein_coding Interval_29272 chr11 82569675 82570355 + 0 NA Intergenic Intergenic 26164 ENSMUSG00000065201.1 ENSMUSG00000065201 ENSMUST00000083267 Gm24612 snRNA Interval_145457 chr7 34876298 34877151 + 0 NA Intergenic Intergenic 67261 ENSMUSG00000077469.1 ENSMUSG00000077469 ENSMUST00000104281 Gm25922 snoRNA Interval_130382 chr5 127192013 127192268 + 0 NA Intergenic Intergenic 8957 ENSMUSG00000104778.1 ENSMUSG00000104778 ENSMUST00000197873 Gm43476 lincRNA Interval_116412 chr4 111638168 111638950 + 0 NA intron (ENSMUSG00000061298.14, intron 3 of 3) protein_coding-intron (ENSMUSG00000061298.14, intron 11 of 12) 71864 ENSMUSG00000061298.14 ENSMUSG00000061298 ENSMUST00000142460 Agbl4 protein_coding Interval_70996 chr17 17059303 17060143 + 0 NA Intergenic Intergenic -4390 ENSMUSG00000096696.1 ENSMUSG00000096696 ENSMUST00000127027 Zfp960 protein_coding Interval_31955 chr11 104105666 104105969 + 0 NA Intergenic Intergenic -27038 ENSMUSG00000018634.10 ENSMUSG00000018634 ENSMUST00000093925 Crhr1 protein_coding Interval_16414 chr10 62791232 62793425 + 0 NA promoter-TSS (ENSMUSG00000020074.7) protein_coding-promoter-TSS (ENSMUSG00000020074.7) -9141 ENSMUSG00000112806.1 ENSMUSG00000112806 ENSMUST00000218355 Gm48146 TEC Interval_125260 chr5 65723934 65725353 + 0 NA Intergenic Intergenic 39223 ENSMUSG00000106978.1 ENSMUSG00000106978 ENSMUST00000202069 N4bp2os processed_transcript Interval_16849 chr10 69235385 69237780 + 0 NA intron (ENSMUSG00000019944.14, intron 1 of 2) protein_coding-intron (ENSMUSG00000019944.14, intron 2 of 10) 17197 ENSMUSG00000019944.14 ENSMUSG00000019944 ENSMUST00000165765 Rhobtb1 protein_coding Interval_28872 chr11 78923178 78925934 + 0 NA promoter-TSS (ENSMUSG00000020826.9) protein_coding-promoter-TSS (ENSMUSG00000020826.9) -620 ENSMUSG00000020826.9 ENSMUSG00000020826 ENSMUST00000214397 Nos2 protein_coding Interval_154264 chr8 13922584 13922834 + 0 NA intron (ENSMUSG00000038365.8, intron 4 of 10) protein_coding-intron (ENSMUSG00000038365.8, intron 4 of 9) -4270 ENSMUSG00000038365.8 ENSMUSG00000038365 ENSMUST00000209310 Fbxo25 protein_coding Interval_54017 chr14 64536834 64537046 + 0 NA intron (ENSMUSG00000114680.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000114680.1, intron 1 of 2) 598 ENSMUSG00000114680.1 ENSMUSG00000114680 ENSMUST00000223738 Gm47202 lincRNA Interval_74052 chr17 46287551 46288508 + 0 NA Intergenic Intergenic -5024 ENSMUSG00000012296.16 ENSMUSG00000012296 ENSMUST00000224445 Tjap1 protein_coding Interval_92874 chr2 67544635 67545024 + 0 NA Intergenic Intergenic -21042 ENSMUSG00000034780.6 ENSMUSG00000034780 ENSMUST00000112346 B3galt1 protein_coding Interval_103569 chr3 49822594 49822833 + 0 NA Intergenic Intergenic -41826 ENSMUSG00000102943.1 ENSMUSG00000102943 ENSMUST00000193230 Gm37550 processed_pseudogene Interval_136584 chr6 56107099 56108330 + 0 NA intron (ENSMUSG00000004347.17, intron 16 of 16) protein_coding-intron (ENSMUSG00000004347.17, intron 16 of 18) 65317 ENSMUSG00000106152.1 ENSMUSG00000106152 ENSMUST00000198921 Gm44413 miRNA Interval_45121 chr13 52493417 52493920 + 0 NA Intergenic Intergenic 37611 ENSMUSG00000047842.7 ENSMUSG00000047842 ENSMUST00000057442 Diras2 protein_coding Interval_44361 chr13 44182687 44183241 + 0 NA Intergenic Intergenic 32369 ENSMUSG00000113458.1 ENSMUSG00000113458 ENSMUST00000221119 Gm33684 lincRNA Interval_155546 chr8 34252574 34253459 + 0 NA Intergenic Intergenic 36157 ENSMUSG00000100605.1 ENSMUSG00000100605 ENSMUST00000188318 Gm29243 lincRNA Interval_59897 chr15 61175053 61175884 + 0 NA Intergenic Intergenic -8683 ENSMUSG00000116000.1 ENSMUSG00000116000 ENSMUST00000229129 Gm49497 lincRNA Interval_44308 chr13 43537280 43538233 + 0 NA TTS (ENSMUSG00000021371.5) protein_coding-TTS (ENSMUSG00000021371.5) 7536 ENSMUSG00000112983.1 ENSMUSG00000112983 ENSMUST00000222336 Gm32939 lincRNA Interval_106334 chr3 95426251 95428752 + 0 NA promoter-TSS (ENSMUSG00000097532.2) transcribed_unprocessed_pseudogene-promoter-TSS (ENSMUSG00000097532.2) -1062 ENSMUSG00000097532.2 ENSMUSG00000097532 ENSMUST00000238767 Gm4349 transcribed_unprocessed_pseudogene Interval_79699 chr18 34591150 34592411 + 0 NA intron (ENSMUSG00000049357.11, intron 2 of 6) protein_coding-intron (ENSMUSG00000049357.11, intron 2 of 5) 5565 ENSMUSG00000049357.11 ENSMUSG00000049357 ENSMUST00000129566 Brd8dc protein_coding Interval_153237 chr7 142690316 142690580 + 0 NA intron (ENSMUSG00000000215.11, intron 3 of 4) protein_coding-intron (ENSMUSG00000000215.11, intron 1 of 2) -20506 ENSMUSG00000115302.1 ENSMUSG00000115302 ENSMUST00000228850 Gm49394 protein_coding Interval_63024 chr15 98695956 98696862 + 0 NA promoter-TSS (ENSMUSG00000116482.1) lincRNA-promoter-TSS (ENSMUSG00000116482.1) -218 ENSMUSG00000116482.1 ENSMUSG00000116482 ENSMUST00000230172 Gm34152 lincRNA Interval_105339 chr3 85126082 85127491 + 0 NA intron (ENSMUSG00000102805.5, intron 3 of 9) protein_coding-intron (ENSMUSG00000102805.5, intron 3 of 9) 25910 ENSMUSG00000104290.1 ENSMUSG00000104290 ENSMUST00000194445 Gm38041 processed_pseudogene Interval_153878 chr8 10534675 10535023 + 0 NA intron (ENSMUSG00000039057.11, intron 28 of 34) protein_coding-intron (ENSMUSG00000039057.11, intron 27 of 34) 142064 ENSMUSG00000109258.1 ENSMUSG00000109258 ENSMUST00000208649 5330413D20Rik lincRNA Interval_79726 chr18 34750895 34752228 + 0 NA promoter-TSS (ENSMUSG00000044201.10) protein_coding-promoter-TSS (ENSMUSG00000044201.10) -4440 ENSMUSG00000097755.2 ENSMUSG00000097755 ENSMUST00000236940 2010110K18Rik lincRNA Interval_82906 chr18 78768057 78768563 + 0 NA intron (ENSMUSG00000024548.11, intron 5 of 5) protein_coding-intron (ENSMUSG00000024548.11, intron 5 of 5) 120182 ENSMUSG00000088733.1 ENSMUSG00000088733 ENSMUST00000158108 Gm23895 snRNA Interval_120603 chr4 149643386 149643953 + 0 NA exon (ENSMUSG00000039953.13, exon 13 of 19) protein_coding-exon (ENSMUSG00000039953.13, exon 13 of 19) 11898 ENSMUSG00000098580.1 ENSMUSG00000098580 ENSMUST00000185093 Mir7023 miRNA Interval_113722 chr4 57846822 57847450 + 0 NA intron (ENSMUSG00000038729.24, intron 1 of 3) protein_coding-intron (ENSMUSG00000038729.24, intron 2 of 2) 26086 ENSMUSG00000038729.24 ENSMUSG00000038729 ENSMUST00000102902 Pakap protein_coding Interval_120515 chr4 149089735 149090571 + 0 NA intron (ENSMUSG00000028975.16, intron 1 of 3) protein_coding-intron (ENSMUSG00000028975.16, intron 1 of 8) -6230 ENSMUSG00000081086.1 ENSMUSG00000081086 ENSMUST00000118516 Gm9506 processed_pseudogene Interval_159708 chr8 98619967 98620389 + 0 NA Intergenic Intergenic 55024 ENSMUSG00000080480.1 ENSMUSG00000080480 ENSMUST00000116830 Gm23494 snRNA Interval_48881 chr13 104255722 104256222 + 0 NA Intergenic Intergenic 20097 ENSMUSG00000021714.15 ENSMUSG00000021714 ENSMUST00000224098 Cenpk protein_coding Interval_169905 chr9 102856408 102857209 + 0 NA intron (ENSMUSG00000032547.12, intron 1 of 1) protein_coding-intron (ENSMUSG00000032547.12, intron 1 of 14) 4973 ENSMUSG00000110877.1 ENSMUSG00000110877 ENSMUST00000214076 Gm47427 TEC Interval_11926 chr1 187215157 187216092 + 0 NA promoter-TSS (ENSMUSG00000026611.17) protein_coding-promoter-TSS (ENSMUSG00000026611.17) 86 ENSMUSG00000039210.16 ENSMUSG00000039210 ENSMUST00000160570 Gpatch2 protein_coding Interval_127948 chr5 109750966 109752611 + 0 NA promoter-TSS (ENSMUSG00000072762.9) protein_coding-promoter-TSS (ENSMUSG00000072762.9) -191 ENSMUSG00000072762.9 ENSMUSG00000072762 ENSMUST00000100937 4930522L14Rik protein_coding Interval_125403 chr5 66705001 66705521 + 0 NA Intergenic Intergenic -13109 ENSMUSG00000107284.1 ENSMUSG00000107284 ENSMUST00000202958 Gm43280 TEC Interval_46851 chr13 72498547 72498867 + 0 NA Intergenic Intergenic -26138 ENSMUSG00000113858.1 ENSMUSG00000113858 ENSMUST00000221407 Gm4057 processed_pseudogene Interval_146728 chr7 49762375 49763415 + 0 NA TTS (ENSMUSG00000039745.8) protein_coding-TTS (ENSMUSG00000039745.8) 3780 ENSMUSG00000039745.8 ENSMUSG00000039745 ENSMUST00000207895 Htatip2 protein_coding Interval_36103 chr12 35850060 35850319 + 0 NA Intergenic Intergenic -30925 ENSMUSG00000114090.1 ENSMUSG00000114090 ENSMUST00000221625 Gm9472 processed_pseudogene Interval_48929 chr13 104940750 104942064 + 0 NA Intergenic Intergenic 22627 ENSMUSG00000114326.1 ENSMUSG00000114326 ENSMUST00000171334 Gm4938 processed_pseudogene Interval_35092 chr12 17256917 17257184 + 0 NA Intergenic Intergenic -9545 ENSMUSG00000020571.13 ENSMUSG00000020571 ENSMUST00000163000 Pdia6 protein_coding Interval_67051 chr16 42174976 42175608 + 0 NA TTS (ENSMUSG00000061080.11) protein_coding-TTS (ENSMUSG00000061080.11) 9625 ENSMUSG00000116841.1 ENSMUSG00000116841 ENSMUST00000232237 Gm49737 processed_pseudogene Interval_68946 chr16 89612221 89612722 + 0 NA Intergenic Intergenic 21669 ENSMUSG00000116651.1 ENSMUSG00000116651 ENSMUST00000232201 Gm17844 processed_pseudogene Interval_54256 chr14 66931536 66932437 + 0 NA Intergenic Intergenic -5379 ENSMUSG00000104220.1 ENSMUSG00000104220 ENSMUST00000193416 4930578I07Rik TEC Interval_27805 chr11 70092235 70092445 + 0 NA promoter-TSS (ENSMUSG00000040963.15) protein_coding-promoter-TSS (ENSMUSG00000040963.15) -5352 ENSMUSG00000040963.15 ENSMUSG00000040963 ENSMUST00000179757 Asgr2 protein_coding Interval_124714 chr5 53524392 53526321 + 0 NA intron (ENSMUSG00000039191.12, intron 1 of 6) protein_coding-intron (ENSMUSG00000039191.12, intron 1 of 6) -2625 ENSMUSG00000106807.1 ENSMUSG00000106807 ENSMUST00000200950 Gm10441 antisense Interval_24288 chr11 32128597 32129099 + 0 NA Intergenic Intergenic -27620 ENSMUSG00000086386.1 ENSMUSG00000086386 ENSMUST00000145338 Gm12108 lincRNA Interval_82398 chr18 73693393 73694199 + 0 NA intron (ENSMUSG00000024515.13, intron 1 of 11) protein_coding-intron (ENSMUSG00000024515.13, intron 1 of 11) -17532 ENSMUSG00000117985.1 ENSMUSG00000117985 ENSMUST00000237598 Gm32548 lincRNA Interval_22265 chr11 8434238 8434812 + 0 NA exon (ENSMUSG00000020422.14, exon 31 of 31) protein_coding-exon (ENSMUSG00000020422.14, exon 31 of 31) -50672 ENSMUSG00000083553.1 ENSMUSG00000083553 ENSMUST00000117240 Gm11989 processed_pseudogene Interval_16564 chr10 63736741 63737056 + 0 NA intron (ENSMUSG00000060843.11, intron 5 of 17) protein_coding-intron (ENSMUSG00000060843.11, intron 4 of 16) -84157 ENSMUSG00000060843.11 ENSMUSG00000060843 ENSMUST00000135474 Ctnna3 protein_coding Interval_75917 chr17 73036894 73037798 + 0 NA Intergenic Intergenic -8268 ENSMUSG00000117096.1 ENSMUSG00000117096 ENSMUST00000233236 Gm30420 lincRNA Interval_150825 chr7 115193752 115193997 + 0 NA Intergenic Intergenic 21601 ENSMUSG00000099211.1 ENSMUSG00000099211 ENSMUST00000183778 Gm27684 miRNA Interval_1012 chr1 14026628 14027619 + 0 NA Intergenic Intergenic 85696 ENSMUSG00000104209.1 ENSMUSG00000104209 ENSMUST00000193148 Gm37400 TEC Interval_167046 chr9 64822712 64823285 + 0 NA intron (ENSMUSG00000053641.9, intron 1 of 9) protein_coding-intron (ENSMUSG00000053641.9, intron 1 of 33) 58927 ENSMUSG00000089336.1 ENSMUSG00000089336 ENSMUST00000158711 Gm24347 snoRNA Interval_135063 chr6 35100785 35101181 + 0 NA intron (ENSMUSG00000038784.13, intron 1 of 10) protein_coding-intron (ENSMUSG00000038784.13, intron 1 of 10) 32704 ENSMUSG00000038784.13 ENSMUSG00000038784 ENSMUST00000202666 Cnot4 protein_coding Interval_30318 chr11 93577675 93577890 + 0 NA intron (ENSMUSG00000056158.14, intron 4 of 8) protein_coding-intron (ENSMUSG00000056158.14, intron 5 of 9) -72977 ENSMUSG00000082453.1 ENSMUSG00000082453 ENSMUST00000120917 Gm11502 processed_pseudogene Interval_13283 chr10 14081920 14083039 + 0 NA intron (ENSMUSG00000015501.10, intron 3 of 4) protein_coding-intron (ENSMUSG00000015501.10, intron 2 of 8) 71967 ENSMUSG00000101014.1 ENSMUSG00000101014 ENSMUST00000189331 Gm28289 antisense Interval_171385 chr9 117223419 117223633 + 0 NA intron (ENSMUSG00000039607.17, intron 1 of 13) protein_coding-intron (ENSMUSG00000039607.17, intron 1 of 12) -29010 ENSMUSG00000079669.2 ENSMUSG00000079669 ENSMUST00000172075 Gm17396 processed_transcript Interval_125749 chr5 73872836 73873047 + 0 NA Intergenic Intergenic -39955 ENSMUSG00000107027.1 ENSMUSG00000107027 ENSMUST00000202487 1700019F05Rik lincRNA Interval_163974 chr9 30100686 30101270 + 0 NA Intergenic Intergenic -37259 ENSMUSG00000111175.1 ENSMUSG00000111175 ENSMUST00000214849 Gm19640 processed_pseudogene Interval_14260 chr10 29935676 29936518 + 0 NA Intergenic Intergenic 65335 ENSMUSG00000111195.1 ENSMUSG00000111195 ENSMUST00000213166 Gm48215 lincRNA Interval_56950 chr14 123986964 123987732 + 0 NA promoter-TSS (ENSMUSG00000099994.1) antisense-promoter-TSS (ENSMUSG00000099994.1) -287 ENSMUSG00000099994.1 ENSMUSG00000099994 ENSMUST00000190088 1700024B18Rik antisense Interval_146008 chr7 43089969 43090310 + 0 NA intron (ENSMUSG00000107181.1, intron 1 of 3) lincRNA-intron (ENSMUSG00000107181.1, intron 1 of 3) -7481 ENSMUSG00000108492.1 ENSMUSG00000108492 ENSMUST00000206176 Rpl18a-ps4 processed_pseudogene Interval_84166 chr19 8050519 8050728 + 0 NA Intergenic Intergenic 74783 ENSMUSG00000118036.1 ENSMUSG00000118036 ENSMUST00000236487 Gm6386 processed_pseudogene Interval_28308 chr11 75085153 75085711 + 0 NA intron (ENSMUSG00000038290.15, intron 4 of 4) protein_coding-intron (ENSMUSG00000038290.15, intron 13 of 18) -14219 ENSMUSG00000082481.1 ENSMUSG00000082481 ENSMUST00000119773 Rps12-ps19 processed_pseudogene Interval_150957 chr7 116721810 116722148 + 0 NA Intergenic Intergenic -30494 ENSMUSG00000088234.1 ENSMUSG00000088234 ENSMUST00000157609 Gm25423 snRNA Interval_135895 chr6 48524661 48525198 + 0 NA TTS (ENSMUSG00000107476.3) transcribed_unitary_pseudogene-TTS (ENSMUSG00000107476.3) 161 ENSMUSG00000044211.9 ENSMUSG00000044211 ENSMUST00000056948 Gm7887 processed_pseudogene Interval_103977 chr3 55976856 55978064 + 0 NA intron (ENSMUSG00000027799.12, intron 30 of 57) protein_coding-intron (ENSMUSG00000027799.12, intron 30 of 57) -20547 ENSMUSG00000077276.1 ENSMUSG00000077276 ENSMUST00000104088 Gm22784 snoRNA Interval_144845 chr7 28571304 28571593 + 0 NA intron (ENSMUSG00000030602.13, intron 1 of 3) protein_coding-intron (ENSMUSG00000109336.1, intron 1 of 12) -10464 ENSMUSG00000098558.1 ENSMUSG00000098558 ENSMUST00000183983 Mir7049 miRNA Interval_36443 chr12 44674682 44675206 + 0 NA Intergenic Intergenic -52282 ENSMUSG00000112823.1 ENSMUSG00000112823 ENSMUST00000217983 Gm6125 processed_pseudogene Interval_93264 chr2 71545665 71547034 + 0 NA promoter-TSS (ENSMUSG00000023391.8) protein_coding-promoter-TSS (ENSMUSG00000023391.8) -399 ENSMUSG00000023391.8 ENSMUSG00000023391 ENSMUST00000134249 Dlx2 protein_coding Interval_96440 chr2 122764979 122765903 + 0 NA promoter-TSS (ENSMUSG00000005803.14) protein_coding-promoter-TSS (ENSMUSG00000005803.14) -6277 ENSMUSG00000005803.14 ENSMUSG00000005803 ENSMUST00000176343 Sqor protein_coding Interval_87129 chr19 46348515 46349906 + 0 NA exon (ENSMUSG00000099655.2, exon 2 of 2) protein_coding-exon (ENSMUSG00000099655.2, exon 2 of 2) 1092 ENSMUSG00000099655.2 ENSMUSG00000099655 ENSMUST00000189008 2310034G01Rik protein_coding Interval_104833 chr3 75650281 75652233 + 0 NA intron (ENSMUSG00000099370.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000099370.1, intron 1 of 2) -2600 ENSMUSG00000099370.1 ENSMUSG00000099370 ENSMUST00000191479 Platr10 lincRNA Interval_107349 chr3 106363921 106364372 + 0 NA Intergenic Intergenic -9060 ENSMUSG00000105436.1 ENSMUSG00000105436 ENSMUST00000198208 Gm43212 unprocessed_pseudogene Interval_18650 chr10 88804503 88804994 + 0 NA intron (ENSMUSG00000004356.8, intron 17 of 61) protein_coding-intron (ENSMUSG00000004356.8, intron 17 of 61) 22035 ENSMUSG00000004356.8 ENSMUSG00000004356 ENSMUST00000220439 Utp20 protein_coding Interval_83673 chr19 3634833 3636607 + 0 NA intron (ENSMUSG00000024913.16, intron 6 of 22) protein_coding-intron (ENSMUSG00000024913.16, intron 5 of 22) 50841 ENSMUSG00000024913.16 ENSMUSG00000024913 ENSMUST00000176867 Lrp5 protein_coding Interval_92370 chr2 59312995 59314006 + 0 NA intron (ENSMUSG00000026991.20, intron 8 of 12) protein_coding-intron (ENSMUSG00000026991.20, intron 9 of 21) 73971 ENSMUSG00000087455.7 ENSMUSG00000087455 ENSMUST00000155111 5330411J11Rik processed_transcript Interval_51592 chr14 30568159 30568440 + 0 NA exon (ENSMUSG00000021957.7, exon 7 of 14) protein_coding-exon (ENSMUSG00000021957.7, exon 7 of 14) -3850 ENSMUSG00000093156.1 ENSMUSG00000093156 ENSMUST00000175415 Mir3076 miRNA Interval_117806 chr4 126325080 126326293 + 0 NA promoter-TSS (ENSMUSG00000028845.15) protein_coding-promoter-TSS (ENSMUSG00000028845.15) -56 ENSMUSG00000028845.15 ENSMUSG00000028845 ENSMUST00000141990 Tekt2 protein_coding Interval_15366 chr10 45114392 45114899 + 0 NA intron (ENSMUSG00000019849.11, intron 7 of 14) protein_coding-intron (ENSMUSG00000019849.11, intron 7 of 14) -18937 ENSMUSG00000077082.1 ENSMUSG00000077082 ENSMUST00000103894 Gm23766 miRNA Interval_61268 chr15 80369728 80369953 + 0 NA intron (ENSMUSG00000022416.15, intron 12 of 36) protein_coding-intron (ENSMUSG00000022416.15, intron 12 of 36) -19488 ENSMUSG00000022416.15 ENSMUSG00000022416 ENSMUST00000160175 Cacna1i protein_coding Interval_97345 chr2 135084497 135084744 + 0 NA intron (ENSMUSG00000051177.16, intron 3 of 6) protein_coding-intron (ENSMUSG00000051177.16, intron 3 of 31) 130996 ENSMUSG00000085247.1 ENSMUSG00000085247 ENSMUST00000138303 4930545L23Rik antisense Interval_143274 chr7 4900929 4902788 + 0 NA intron (ENSMUSG00000110221.1, intron 1 of 1) protein_coding-intron (ENSMUSG00000110221.1, intron 1 of 1) 4658 ENSMUSG00000110221.1 ENSMUSG00000110221 ENSMUST00000210663 Gm36210 protein_coding Interval_91497 chr2 39420326 39421451 + 0 NA Intergenic Intergenic 25475 ENSMUSG00000083401.1 ENSMUSG00000083401 ENSMUST00000120391 Gm13506 unprocessed_pseudogene Interval_150674 chr7 113245363 113245630 + 0 NA intron (ENSMUSG00000055116.8, intron 3 of 20) protein_coding-intron (ENSMUSG00000055116.8, intron 2 of 19) 10873 ENSMUSG00000055116.8 ENSMUSG00000055116 ENSMUST00000211547 Arntl protein_coding Interval_75903 chr17 72889714 72891225 + 0 NA Intergenic Intergenic -30719 ENSMUSG00000024063.13 ENSMUSG00000024063 ENSMUST00000148556 Lbh protein_coding Interval_5590 chr1 90020528 90021362 + 0 NA Intergenic Intergenic -24493 ENSMUSG00000067081.13 ENSMUSG00000067081 ENSMUST00000151330 Asb18 protein_coding Interval_174190 chrX 139230966 139231653 + 0 NA exon (ENSMUSG00000042515.13, exon 3 of 5) protein_coding-exon (ENSMUSG00000042515.13, exon 3 of 5) 14143 ENSMUSG00000042515.13 ENSMUSG00000042515 ENSMUST00000113042 Pwwp3b protein_coding Interval_170971 chr9 113415260 113415894 + 0 NA intron (ENSMUSG00000111532.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000111532.1, intron 1 of 2) 4483 ENSMUSG00000111532.1 ENSMUSG00000111532 ENSMUST00000214286 Gm36485 lincRNA Interval_85623 chr19 29130009 29130797 + 0 NA intron (ENSMUSG00000024785.7, intron 6 of 8) protein_coding-intron (ENSMUSG00000024785.7, intron 6 of 8) -4876 ENSMUSG00000065556.1 ENSMUSG00000065556 ENSMUST00000083622 Mir101b miRNA Interval_137164 chr6 68799047 68799481 + 0 NA Intergenic Intergenic 8444 ENSMUSG00000076533.3 ENSMUSG00000076533 ENSMUST00000103334 Igkv4-90 IG_V_gene Interval_166901 chr9 63823729 63824585 + 0 NA Intergenic Intergenic -22360 ENSMUSG00000111137.1 ENSMUSG00000111137 ENSMUST00000215986 Gm2553 processed_pseudogene Interval_116895 chr4 118053669 118054860 + 0 NA intron (ENSMUSG00000028538.12, intron 2 of 10) protein_coding-intron (ENSMUSG00000028538.12, intron 3 of 11) -22382 ENSMUSG00000028538.12 ENSMUSG00000028538 ENSMUST00000126336 St3gal3 protein_coding Interval_124643 chr5 52763337 52763557 + 0 NA intron (ENSMUSG00000029186.12, intron 9 of 9) protein_coding-intron (ENSMUSG00000029186.12, intron 9 of 9) 8845 ENSMUSG00000029186.12 ENSMUSG00000029186 ENSMUST00000145825 Pi4k2b protein_coding Interval_128612 chr5 114299479 114300031 + 0 NA intron (ENSMUSG00000066952.11, intron 1 of 31) protein_coding-intron (ENSMUSG00000066952.11, intron 1 of 31) -15186 ENSMUSG00000066952.11 ENSMUSG00000066952 ENSMUST00000125230 Myo1h protein_coding Interval_78787 chr18 20631800 20632293 + 0 NA intron (ENSMUSG00000085595.1, intron 1 of 2) antisense-intron (ENSMUSG00000085595.1, intron 1 of 2) 33214 ENSMUSG00000085595.1 ENSMUSG00000085595 ENSMUST00000130296 Gm16090 antisense Interval_65150 chr16 20195246 20195762 + 0 NA intron (ENSMUSG00000041215.16, intron 1 of 2) protein_coding-intron (ENSMUSG00000041215.16, intron 14 of 29) -18492 ENSMUSG00000084838.3 ENSMUSG00000084838 ENSMUST00000117664 Gm10241 processed_pseudogene Interval_112936 chr4 46195737 46196666 + 0 NA exon (ENSMUSG00000028329.13, exon 1 of 6) protein_coding-exon (ENSMUSG00000028329.13, exon 1 of 6) 103 ENSMUSG00000028329.13 ENSMUSG00000028329 ENSMUST00000130051 Xpa protein_coding Interval_124737 chr5 53615789 53616176 + 0 NA intron (ENSMUSG00000039191.12, intron 3 of 12) protein_coding-intron (ENSMUSG00000039191.12, intron 1 of 10) -22650 ENSMUSG00000039191.12 ENSMUSG00000039191 ENSMUST00000202092 Rbpj protein_coding Interval_22747 chr11 14420333 14420736 + 0 NA Intergenic Intergenic -67079 ENSMUSG00000080734.1 ENSMUSG00000080734 ENSMUST00000120786 Gm12006 processed_pseudogene Interval_27368 chr11 67017559 67018678 + 0 NA Intergenic Intergenic -7036 ENSMUSG00000050270.12 ENSMUSG00000050270 ENSMUST00000061786 Tmem220 protein_coding Interval_90219 chr2 29087978 29088430 + 0 NA promoter-TSS (ENSMUSG00000086519.1) lincRNA-promoter-TSS (ENSMUSG00000086519.1) -462 ENSMUSG00000086519.1 ENSMUSG00000086519 ENSMUST00000141935 Gm13393 lincRNA Interval_110262 chr3 155092993 155093992 + 0 NA promoter-TSS (ENSMUSG00000028182.14) protein_coding-promoter-TSS (ENSMUSG00000028182.14) 58 ENSMUSG00000028182.14 ENSMUSG00000028182 ENSMUST00000194376 Lrriq3 protein_coding Interval_59858 chr15 59887872 59888114 + 0 NA Intergenic Intergenic 42297 ENSMUSG00000115734.1 ENSMUSG00000115734 ENSMUST00000227398 Gm7708 processed_pseudogene Interval_79064 chr18 24258655 24259411 + 0 NA TTS (ENSMUSG00000091363.1) processed_pseudogene-TTS (ENSMUSG00000091363.1) 1655 ENSMUSG00000091363.1 ENSMUSG00000091363 ENSMUST00000163185 Gm7701 processed_pseudogene Interval_148393 chr7 81001015 81002132 + 0 NA intron (ENSMUSG00000005621.11, intron 1 of 9) protein_coding-intron (ENSMUSG00000005621.11, intron 1 of 9) 6890 ENSMUSG00000109302.1 ENSMUSG00000109302 ENSMUST00000207047 Gm44967 TEC Interval_10768 chr1 174490064 174490346 + 0 NA Intergenic Intergenic 48123 ENSMUSG00000066671.4 ENSMUSG00000066671 ENSMUST00000085861 Olfr220 protein_coding Interval_170195 chr9 106115452 106116263 + 0 NA Intergenic Intergenic 6042 ENSMUSG00000099717.1 ENSMUSG00000099717 ENSMUST00000188491 Gm9451 processed_pseudogene Interval_168261 chr9 78298691 78299213 + 0 NA exon (ENSMUSG00000074179.11, exon 5 of 8) protein_coding-exon (ENSMUSG00000074179.11, exon 5 of 8) 934 ENSMUSG00000074179.11 ENSMUSG00000074179 ENSMUST00000126625 Gm10639 protein_coding Interval_30564 chr11 95142828 95143684 + 0 NA TTS (ENSMUSG00000020871.8) protein_coding-TTS (ENSMUSG00000020871.8) -1796 ENSMUSG00000086552.3 ENSMUSG00000086552 ENSMUST00000156477 Dlx4os antisense Interval_133498 chr6 5858572 5860138 + 0 NA intron (ENSMUSG00000029757.16, intron 6 of 16) protein_coding-intron (ENSMUSG00000029757.16, intron 5 of 15) 101936 ENSMUSG00000029757.16 ENSMUSG00000029757 ENSMUST00000203520 Dync1i1 protein_coding Interval_143145 chr7 3657383 3658378 + 0 NA promoter-TSS (ENSMUSG00000035632.16) protein_coding-promoter-TSS (ENSMUSG00000035632.16) 1918 ENSMUSG00000093290.1 ENSMUSG00000093290 ENSMUST00000175549 Mir3572 miRNA Interval_120602 chr4 149626935 149628749 + 0 NA TTS (ENSMUSG00000039953.13) protein_coding-TTS (ENSMUSG00000039953.13) 712 ENSMUSG00000039953.13 ENSMUSG00000039953 ENSMUST00000151895 Clstn1 protein_coding Interval_99277 chr2 158613533 158615165 + 0 NA exon (ENSMUSG00000037771.11, exon 2 of 2) protein_coding-exon (ENSMUSG00000037771.11, exon 2 of 2) -2529 ENSMUSG00000087563.1 ENSMUSG00000087563 ENSMUST00000138427 Gm14205 antisense Interval_7252 chr1 128238373 128238829 + 0 NA TTS (ENSMUSG00000056211.13) protein_coding-TTS (ENSMUSG00000056211.13) -5363 ENSMUSG00000026353.9 ENSMUSG00000026353 ENSMUST00000189895 Ubxn4 protein_coding Interval_121173 chr4 153789472 153789863 + 0 NA Intergenic Intergenic -86717 ENSMUSG00000077519.1 ENSMUSG00000077519 ENSMUST00000104331 Gm25880 snoRNA Interval_138837 chr6 92437208 92437525 + 0 NA intron (ENSMUSG00000030020.13, intron 2 of 7) protein_coding-intron (ENSMUSG00000030020.13, intron 3 of 8) -124411 ENSMUSG00000098130.1 ENSMUSG00000098130 ENSMUST00000182175 Gm17797 processed_pseudogene Interval_92629 chr2 61711154 61713338 + 0 NA intron (ENSMUSG00000026914.15, intron 1 of 4) protein_coding-intron (ENSMUSG00000026914.15, intron 1 of 11) -4655 ENSMUSG00000081954.1 ENSMUSG00000081954 ENSMUST00000119435 Gm13626 processed_pseudogene Interval_152329 chr7 131882015 131883029 + 0 NA intron (ENSMUSG00000109014.1, intron 3 of 3) protein_coding-intron (ENSMUSG00000030849.18, intron 2 of 6) 50132 ENSMUSG00000109340.1 ENSMUSG00000109340 ENSMUST00000208929 Gm44548 processed_pseudogene Interval_3111 chr1 53532372 53532618 + 0 NA intron (ENSMUSG00000096141.2, intron 34 of 65) protein_coding-intron (ENSMUSG00000096141.2, intron 34 of 65) -89100 ENSMUSG00000092657.1 ENSMUSG00000092657 ENSMUST00000174916 Gm25240 miRNA Interval_57789 chr15 19994306 19995566 + 0 NA Intergenic Intergenic 23929 ENSMUSG00000115830.1 ENSMUSG00000115830 ENSMUST00000226614 Gm49176 processed_pseudogene Interval_29289 chr11 82719577 82721099 + 0 NA intron (ENSMUSG00000020698.11, intron 12 of 13) protein_coding-intron (ENSMUSG00000020698.11, intron 12 of 13) -4805 ENSMUSG00000083203.1 ENSMUSG00000083203 ENSMUST00000122124 Gm11421 processed_pseudogene Interval_36743 chr12 52867803 52868486 + 0 NA intron (ENSMUSG00000061603.8, intron 1 of 11) protein_coding-intron (ENSMUSG00000061603.8, intron 2 of 13) 72308 ENSMUSG00000061603.8 ENSMUSG00000061603 ENSMUST00000219786 Akap6 protein_coding Interval_65460 chr16 22455875 22457631 + 0 NA Intergenic Intergenic -54727 ENSMUSG00000089874.1 ENSMUSG00000089874 ENSMUST00000159309 9230117E06Rik antisense Interval_85269 chr19 24259469 24260370 + 0 NA Intergenic Intergenic 18252 ENSMUSG00000059363.10 ENSMUSG00000059363 ENSMUST00000132688 Fxn protein_coding Interval_20387 chr10 117235233 117235549 + 0 NA intron (ENSMUSG00000020177.12, intron 3 of 4) protein_coding-intron (ENSMUSG00000020177.12, intron 3 of 3) 3263 ENSMUSG00000020177.12 ENSMUSG00000020177 ENSMUST00000020392 9530003J23Rik protein_coding Interval_26633 chr11 59350226 59350750 + 0 NA Intergenic Intergenic -13342 ENSMUSG00000093572.1 ENSMUSG00000093572 ENSMUST00000177002 Gm24756 miRNA Interval_107714 chr3 111767411 111768338 + 0 NA Intergenic Intergenic -21618 ENSMUSG00000105882.1 ENSMUSG00000105882 ENSMUST00000196237 Gm42905 TEC Interval_123335 chr5 31535044 31535722 + 0 NA promoter-TSS (ENSMUSG00000029141.16) protein_coding-promoter-TSS (ENSMUSG00000029141.16) -7576 ENSMUSG00000053134.13 ENSMUSG00000053134 ENSMUST00000201692 Supt7l protein_coding Interval_121856 chr5 8868166 8868530 + 0 NA Intergenic Intergenic 16961 ENSMUSG00000028970.9 ENSMUSG00000028970 ENSMUST00000196048 Abcb1b protein_coding Interval_35710 chr12 28566959 28567841 + 0 NA intron (ENSMUSG00000020636.14, intron 4 of 11) protein_coding-intron (ENSMUSG00000020636.14, intron 4 of 11) -15001 ENSMUSG00000020633.14 ENSMUSG00000020633 ENSMUST00000020963 Dcdc2c protein_coding Interval_125073 chr5 64265287 64266541 + 0 NA intron (ENSMUSG00000029174.18, intron 7 of 20) protein_coding-intron (ENSMUSG00000029174.18, intron 6 of 21) -12689 ENSMUSG00000081143.2 ENSMUSG00000081143 ENSMUST00000064305 Gm15823 processed_pseudogene Interval_107752 chr3 113166268 113166470 + 0 NA Intergenic Intergenic -9642 ENSMUSG00000083079.4 ENSMUSG00000083079 ENSMUST00000120184 Amy2b unprocessed_pseudogene Interval_92719 chr2 63931129 63931683 + 0 NA Intergenic Intergenic 166604 ENSMUSG00000075324.13 ENSMUSG00000075324 ENSMUST00000153538 Fign protein_coding Interval_94353 chr2 90452125 90452908 + 0 NA intron (ENSMUSG00000025314.16, intron 13 of 23) protein_coding-intron (ENSMUSG00000025314.16, intron 11 of 21) -26734 ENSMUSG00000085471.1 ENSMUSG00000085471 ENSMUST00000126953 4933423P22Rik antisense Interval_48955 chr13 105747305 105747501 + 0 NA Intergenic Intergenic 86275 ENSMUSG00000114671.1 ENSMUSG00000114671 ENSMUST00000225365 Gm48211 processed_pseudogene Interval_32295 chr11 106732133 106732939 + 0 NA intron (ENSMUSG00000020717.19, intron 1 of 15) protein_coding-intron (ENSMUSG00000020717.19, intron 1 of 15) -18729 ENSMUSG00000040528.15 ENSMUSG00000040528 ENSMUST00000182479 Milr1 protein_coding Interval_39408 chr12 87226810 87227336 + 0 NA exon (ENSMUSG00000072919.4, exon 2 of 6) protein_coding-exon (ENSMUSG00000072919.4, exon 2 of 6) 11659 ENSMUSG00000072919.4 ENSMUSG00000072919 ENSMUST00000221768 Noxred1 protein_coding Interval_29752 chr11 86575465 86577609 + 0 NA Intergenic Intergenic 7621 ENSMUSG00000065455.1 ENSMUSG00000065455 ENSMUST00000083521 Mir21a miRNA Interval_114622 chr4 83265429 83266674 + 0 NA promoter-TSS (ENSMUSG00000038172.14) protein_coding-promoter-TSS (ENSMUSG00000038172.14) 19118 ENSMUSG00000038172.14 ENSMUSG00000038172 ENSMUST00000148811 Ttc39b protein_coding Interval_161223 chr8 118820590 118821507 + 0 NA intron (ENSMUSG00000031841.19, intron 6 of 8) protein_coding-intron (ENSMUSG00000031841.19, intron 4 of 13) 94148 ENSMUSG00000087707.1 ENSMUSG00000087707 ENSMUST00000157082 Gm22999 snoRNA Interval_61632 chr15 83055699 83057751 + 0 NA Intergenic Intergenic -33642 ENSMUSG00000058099.16 ENSMUSG00000058099 ENSMUST00000231204 Nfam1 protein_coding Interval_115714 chr4 102967869 102968273 + 0 NA TTS (ENSMUSG00000028524.21) protein_coding-TTS (ENSMUSG00000028524.21) -10620 ENSMUSG00000028523.14 ENSMUSG00000028523 ENSMUST00000139883 Tctex1d1 protein_coding Interval_33876 chr11 119128759 119129769 + 0 NA intron (ENSMUSG00000086547.1, intron 2 of 5) lincRNA-intron (ENSMUSG00000086547.1, intron 2 of 5) 9157 ENSMUSG00000086547.1 ENSMUSG00000086547 ENSMUST00000144096 Gm11755 lincRNA Interval_119230 chr4 136336432 136337427 + 0 NA intron (ENSMUSG00000066037.14, intron 1 of 1) protein_coding-intron (ENSMUSG00000066037.14, intron 8 of 9) -2090 ENSMUSG00000066037.14 ENSMUSG00000066037 ENSMUST00000180855 Hnrnpr protein_coding Interval_88785 chr2 10706778 10707063 + 0 NA Intergenic Intergenic -186789 ENSMUSG00000103237.1 ENSMUSG00000103237 ENSMUST00000192439 Gm18547 processed_pseudogene Interval_60314 chr15 72793569 72793757 + 0 NA intron (ENSMUSG00000047921.17, intron 16 of 21) protein_coding-intron (ENSMUSG00000047921.17, intron 16 of 21) 16661 ENSMUSG00000106847.1 ENSMUSG00000106847 ENSMUST00000202826 Peg13 sense_intronic Interval_103900 chr3 54734434 54735950 + 0 NA promoter-TSS (ENSMUSG00000036632.9) protein_coding-promoter-TSS (ENSMUSG00000036632.9) -157 ENSMUSG00000027752.15 ENSMUSG00000027752 ENSMUST00000198780 Exosc8 protein_coding Interval_24068 chr11 29925005 29925824 + 0 NA intron (ENSMUSG00000044072.14, intron 2 of 41) protein_coding-intron (ENSMUSG00000044072.14, intron 2 of 41) -57000 ENSMUSG00000080906.1 ENSMUSG00000080906 ENSMUST00000121962 Gm12095 processed_pseudogene Interval_115659 chr4 101771970 101772977 + 0 NA intron (ENSMUSG00000057722.17, intron 1 of 4) protein_coding-intron (ENSMUSG00000057722.17, intron 11 of 18) 1105 ENSMUSG00000057722.17 ENSMUSG00000057722 ENSMUST00000151733 Lepr protein_coding Interval_1726 chr1 32835850 32836573 + 0 NA Intergenic Intergenic 109572 ENSMUSG00000089395.1 ENSMUSG00000089395 ENSMUST00000158770 Gm23024 misc_RNA Interval_23433 chr11 22603556 22603781 + 0 NA Intergenic Intergenic -13740 ENSMUSG00000086256.1 ENSMUSG00000086256 ENSMUST00000142151 Gm12052 lincRNA Interval_171470 chr9 118584968 118585580 + 0 NA exon (ENSMUSG00000110676.1, exon 2 of 2) lincRNA-exon (ENSMUSG00000110676.1, exon 2 of 2) 4921 ENSMUSG00000110676.1 ENSMUSG00000110676 ENSMUST00000212679 Gm45897 lincRNA Interval_103913 chr3 54914992 54916429 + 0 NA promoter-TSS (ENSMUSG00000056306.5) protein_coding-promoter-TSS (ENSMUSG00000056306.5) -679 ENSMUSG00000056306.5 ENSMUSG00000056306 ENSMUST00000070342 Sertm1 protein_coding Interval_67058 chr16 42297671 42298010 + 0 NA intron (ENSMUSG00000047261.9, intron 1 of 2) protein_coding-intron (ENSMUSG00000047261.9, intron 1 of 2) 5629 ENSMUSG00000098300.1 ENSMUSG00000098300 ENSMUST00000184886 Mir6540 miRNA Interval_63104 chr15 99093184 99094690 + 0 NA intron (ENSMUSG00000038009.7, intron 1 of 2) protein_coding-intron (ENSMUSG00000038009.7, intron 1 of 2) 767 ENSMUSG00000038009.7 ENSMUSG00000038009 ENSMUST00000061295 Dnajc22 protein_coding Interval_9442 chr1 157137074 157137342 + 0 NA exon (ENSMUSG00000070565.11, exon 18 of 18) protein_coding-exon (ENSMUSG00000070565.11, exon 18 of 18) 18260 ENSMUSG00000109913.1 ENSMUSG00000109913 ENSMUST00000209278 Gm30694 unitary_pseudogene Interval_74118 chr17 46617711 46619554 + 0 NA intron (ENSMUSG00000023972.10, intron 1 of 19) protein_coding-intron (ENSMUSG00000023972.10, intron 1 of 19) 27390 ENSMUSG00000003546.10 ENSMUSG00000003546 ENSMUST00000003642 Klc4 protein_coding Interval_60493 chr15 74382703 74382939 + 0 NA Intergenic Intergenic 57623 ENSMUSG00000118581.1 ENSMUSG00000118581 ENSMUST00000239328 AC119183.1 unitary_pseudogene Interval_55862 chr14 101621285 101621555 + 0 NA Intergenic Intergenic -12934 ENSMUSG00000033083.16 ENSMUSG00000033083 ENSMUST00000160473 Tbc1d4 protein_coding Interval_109056 chr3 135497821 135498498 + 0 NA intron (ENSMUSG00000028164.15, intron 1 of 2) protein_coding-intron (ENSMUSG00000028164.15, intron 1 of 16) 2506 ENSMUSG00000083045.1 ENSMUSG00000083045 ENSMUST00000120489 Gm16100 processed_pseudogene Interval_96671 chr2 127022243 127023077 + 0 NA intron (ENSMUSG00000001998.15, intron 4 of 15) protein_coding-intron (ENSMUSG00000001998.15, intron 4 of 20) 13906 ENSMUSG00000001998.15 ENSMUSG00000001998 ENSMUST00000142740 Ap4e1 protein_coding Interval_91543 chr2 42318071 42318310 + 0 NA intron (ENSMUSG00000049252.17, intron 2 of 2) protein_coding-intron (ENSMUSG00000049252.17, intron 2 of 90) 129378 ENSMUSG00000098660.1 ENSMUSG00000098660 ENSMUST00000183581 Mir6336 miRNA Interval_125482 chr5 67478166 67478443 + 0 NA TTS (ENSMUSG00000107385.3) processed_transcript-TTS (ENSMUSG00000107385.3) 14401 ENSMUSG00000107385.3 ENSMUSG00000107385 ENSMUST00000202828 C330024D21Rik processed_transcript Interval_8815 chr1 151364783 151365106 + 0 NA TTS (ENSMUSG00000023150.14) protein_coding-TTS (ENSMUSG00000023150.14) 3697 ENSMUSG00000023150.14 ENSMUSG00000023150 ENSMUST00000190872 Ivns1abp protein_coding Interval_119307 chr4 136770881 136771837 + 0 NA exon (ENSMUSG00000028664.14, exon 3 of 16) protein_coding-exon (ENSMUSG00000028664.14, exon 3 of 16) -77319 ENSMUSG00000028664.14 ENSMUSG00000028664 ENSMUST00000144573 Ephb2 protein_coding Interval_12405 chr1 193105873 193106471 + 0 NA exon (ENSMUSG00000016181.9, exon 12 of 12) protein_coding-exon (ENSMUSG00000016181.9, exon 12 of 12) 24035 ENSMUSG00000016181.9 ENSMUSG00000016181 ENSMUST00000194124 Utp25 protein_coding Interval_119392 chr4 137427312 137427622 + 0 NA intron (ENSMUSG00000023433.8, intron 2 of 7) protein_coding-intron (ENSMUSG00000023433.8, intron 2 of 7) -4676 ENSMUSG00000023433.8 ENSMUSG00000023433 ENSMUST00000134565 Cela3b protein_coding Interval_14525 chr10 34887447 34888392 + 0 NA intron (ENSMUSG00000111042.1, intron 2 of 3) transcribed_processed_pseudogene-intron (ENSMUSG00000111042.1, intron 2 of 3) 6511 ENSMUSG00000111042.1 ENSMUSG00000111042 ENSMUST00000215855 Gm18252 transcribed_processed_pseudogene Interval_62161 chr15 88393687 88394202 + 0 NA Intergenic Intergenic -78312 ENSMUSG00000115880.1 ENSMUSG00000115880 ENSMUST00000230151 4930445N06Rik lincRNA Interval_63393 chr15 100787094 100787355 + 0 NA exon (ENSMUSG00000023032.12, exon 6 of 25) protein_coding-exon (ENSMUSG00000023032.12, exon 6 of 25) -15524 ENSMUSG00000023032.12 ENSMUSG00000023032 ENSMUST00000162744 Slc4a8 protein_coding Interval_144674 chr7 27446298 27449670 + 0 NA promoter-TSS (ENSMUSG00000040466.16) protein_coding-promoter-TSS (ENSMUSG00000040466.16) -77 ENSMUSG00000040466.16 ENSMUSG00000040466 ENSMUST00000153644 Blvrb protein_coding Interval_106324 chr3 95384994 95385338 + 0 NA Intergenic Intergenic 17675 ENSMUSG00000105734.1 ENSMUSG00000105734 ENSMUST00000196239 4930558C23Rik protein_coding Interval_48988 chr13 106773106 106773351 + 0 NA Intergenic Intergenic 6992 ENSMUSG00000064854.1 ENSMUSG00000064854 ENSMUST00000082920 Gm24527 snRNA Interval_75278 chr17 65654392 65655394 + 0 NA intron (ENSMUSG00000056515.9, intron 6 of 6) protein_coding-intron (ENSMUSG00000056515.9, intron 6 of 6) 6685 ENSMUSG00000117114.1 ENSMUSG00000117114 ENSMUST00000233942 Gm49867 processed_pseudogene Interval_135390 chr6 38906056 38907627 + 0 NA intron (ENSMUSG00000029925.13, intron 1 of 5) protein_coding-intron (ENSMUSG00000029925.13, intron 1 of 5) -30918 ENSMUSG00000061436.15 ENSMUSG00000061436 ENSMUST00000114855 Hipk2 protein_coding Interval_111945 chr4 32733689 32733911 + 0 NA intron (ENSMUSG00000058006.12, intron 61 of 101) protein_coding-intron (ENSMUSG00000058006.12, intron 61 of 101) -66479 ENSMUSG00000045854.4 ENSMUSG00000045854 ENSMUST00000130321 Lyrm2 protein_coding Interval_139355 chr6 99319672 99320159 + 0 NA intron (ENSMUSG00000030067.17, intron 2 of 3) protein_coding-intron (ENSMUSG00000030067.17, intron 1 of 18) 68584 ENSMUSG00000093559.1 ENSMUSG00000093559 ENSMUST00000177278 Gm20705 sense_intronic Interval_155497 chr8 33915954 33917276 + 0 NA intron (ENSMUSG00000031586.17, intron 1 of 8) protein_coding-intron (ENSMUSG00000031586.17, intron 1 of 7) 12777 ENSMUSG00000031586.17 ENSMUSG00000031586 ENSMUST00000231942 Rbpms protein_coding Interval_156590 chr8 53663993 53664190 + 0 NA Intergenic Intergenic -72486 ENSMUSG00000039396.11 ENSMUSG00000039396 ENSMUST00000135443 Neil3 protein_coding Interval_42404 chr13 13237600 13238033 + 0 NA Intergenic Intergenic -4923 ENSMUSG00000061724.5 ENSMUSG00000061724 ENSMUST00000074863 Gm2423 processed_pseudogene Interval_71591 chr17 24722489 24724774 + 0 NA promoter-TSS (ENSMUSG00000040048.14) protein_coding-promoter-TSS (ENSMUSG00000040048.14) 763 ENSMUSG00000040048.14 ENSMUSG00000040048 ENSMUST00000147648 Ndufb10 protein_coding Interval_103425 chr3 41479497 41479910 + 0 NA intron (ENSMUSG00000105260.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000105260.1, intron 1 of 1) 2182 ENSMUSG00000105260.1 ENSMUSG00000105260 ENSMUST00000196123 Gm40040 lincRNA Interval_128271 chr5 112210077 112210540 + 0 NA TTS (ENSMUSG00000101683.6) lincRNA-TTS (ENSMUSG00000101683.6) 3502 ENSMUSG00000101683.6 ENSMUSG00000101683 ENSMUST00000187272 1700028D13Rik lincRNA Interval_55855 chr14 101557776 101558203 + 0 NA intron (ENSMUSG00000033083.16, intron 1 of 20) protein_coding-intron (ENSMUSG00000033083.16, intron 1 of 13) 15025 ENSMUSG00000115319.1 ENSMUSG00000115319 ENSMUST00000228293 Gm34417 processed_pseudogene Interval_83953 chr19 5792756 5795932 + 0 NA Intergenic Intergenic 2608 ENSMUSG00000092341.3 ENSMUSG00000092341 ENSMUST00000173499 Malat1 lincRNA Interval_166140 chr9 56980492 56980742 + 0 NA intron (ENSMUSG00000055334.4, intron 7 of 8) protein_coding-intron (ENSMUSG00000055334.4, intron 7 of 8) 29739 ENSMUSG00000055334.4 ENSMUSG00000055334 ENSMUST00000068856 Snupn protein_coding Interval_169558 chr9 99121023 99121453 + 0 NA intron (ENSMUSG00000032462.14, intron 2 of 23) protein_coding-intron (ENSMUSG00000032462.14, intron 2 of 23) 18687 ENSMUSG00000032462.14 ENSMUSG00000032462 ENSMUST00000124723 Pik3cb protein_coding Interval_87432 chr19 50388737 50389048 + 0 NA intron (ENSMUSG00000043531.16, intron 2 of 25) protein_coding-intron (ENSMUSG00000043531.16, intron 3 of 26) 241954 ENSMUSG00000110007.2 ENSMUSG00000110007 ENSMUST00000210140 Gm45352 antisense Interval_8561 chr1 142463961 142464199 + 0 NA Intergenic Intergenic -8266 ENSMUSG00000099671.2 ENSMUSG00000099671 ENSMUST00000191024 Gm18183 processed_pseudogene Interval_18527 chr10 86971708 86972662 + 0 NA promoter-TSS (ENSMUSG00000089656.1) antisense-promoter-TSS (ENSMUSG00000089656.1) -31 ENSMUSG00000089656.1 ENSMUSG00000089656 ENSMUST00000162837 Gm16271 antisense Interval_112916 chr4 46038907 46040567 + 0 NA intron (ENSMUSG00000028328.13, intron 1 of 3) protein_coding-intron (ENSMUSG00000028328.13, intron 1 of 9) 528 ENSMUSG00000028328.13 ENSMUSG00000028328 ENSMUST00000155730 Tmod1 protein_coding Interval_84374 chr19 10449357 10450392 + 0 NA TTS (ENSMUSG00000024743.16) protein_coding-TTS (ENSMUSG00000024743.16) 7599 ENSMUSG00000090291.3 ENSMUSG00000090291 ENSMUST00000171400 Lrrc10b protein_coding Interval_84753 chr19 16260386 16260852 + 0 NA intron (ENSMUSG00000024639.5, intron 2 of 2) protein_coding-intron (ENSMUSG00000024639.5, intron 2 of 6) 7002 ENSMUSG00000075268.2 ENSMUSG00000075268 ENSMUST00000099988 Gm10819 processed_pseudogene Interval_80329 chr18 39303270 39303640 + 0 NA promoter-TSS (ENSMUSG00000086312.1) antisense-promoter-TSS (ENSMUSG00000086312.1) -765 ENSMUSG00000086312.1 ENSMUSG00000086312 ENSMUST00000128894 Gm15336 antisense Interval_98249 chr2 150464856 150465158 + 0 NA Intergenic Intergenic 5158 ENSMUSG00000082740.1 ENSMUSG00000082740 ENSMUST00000117906 Gm14127 processed_pseudogene Interval_171845 chr9 121704393 121705521 + 0 NA promoter-TSS (ENSMUSG00000061536.13) protein_coding-promoter-TSS (ENSMUSG00000061536.13) -5510 ENSMUSG00000032526.11 ENSMUSG00000032526 ENSMUST00000217579 Ss18l2 protein_coding Interval_23485 chr11 22879717 22880606 + 0 NA intron (ENSMUSG00000098650.1, intron 2 of 2) protein_coding-intron (ENSMUSG00000098650.1, intron 2 of 2) 11260 ENSMUSG00000065869.1 ENSMUSG00000065869 ENSMUST00000083935 Gm24917 snRNA Interval_31724 chr11 102478450 102478884 + 0 NA exon (ENSMUSG00000034621.14, exon 6 of 6) protein_coding-exon (ENSMUSG00000034621.14, exon 6 of 6) 13942 ENSMUSG00000082487.1 ENSMUSG00000082487 ENSMUST00000117568 Gm11628 processed_pseudogene Interval_7446 chr1 131408036 131408592 + 0 NA exon (ENSMUSG00000101778.1, exon 1 of 1) sense_intronic-exon (ENSMUSG00000101778.1, exon 1 of 1) 899 ENSMUSG00000101778.1 ENSMUSG00000101778 ENSMUST00000191427 Gm29488 sense_intronic Interval_36787 chr12 53992333 53992599 + 0 NA intron (ENSMUSG00000021010.9, intron 5 of 10) protein_coding-intron (ENSMUSG00000021010.9, intron 6 of 11) 86926 ENSMUSG00000099407.1 ENSMUSG00000099407 ENSMUST00000185390 1700060O08Rik antisense Interval_50898 chr14 20640021 20641691 + 0 NA promoter-TSS (ENSMUSG00000099966.1) antisense-promoter-TSS (ENSMUSG00000099966.1) -153 ENSMUSG00000099966.1 ENSMUSG00000099966 ENSMUST00000190699 2810402E24Rik antisense Interval_157567 chr8 71463223 71465384 + 0 NA promoter-TSS (ENSMUSG00000007950.9) protein_coding-promoter-TSS (ENSMUSG00000007950.9) -656 ENSMUSG00000034880.7 ENSMUSG00000034880 ENSMUST00000048914 Mrpl34 protein_coding Interval_111989 chr4 33052605 33053218 + 0 NA TTS (ENSMUSG00000082851.1) processed_pseudogene-TTS (ENSMUSG00000082851.1) 1373 ENSMUSG00000082851.1 ENSMUSG00000082851 ENSMUST00000121630 Gm11931 processed_pseudogene Interval_61779 chr15 84072343 84075020 + 0 NA Intergenic Intergenic 31928 ENSMUSG00000018865.9 ENSMUSG00000018865 ENSMUST00000229826 Sult4a1 protein_coding Interval_97400 chr2 135769941 135771077 + 0 NA intron (ENSMUSG00000039943.16, intron 1 of 4) protein_coding-intron (ENSMUSG00000039943.16, intron 1 of 36) 28679 ENSMUSG00000039943.16 ENSMUSG00000039943 ENSMUST00000147122 Plcb4 protein_coding Interval_127533 chr5 104868932 104869146 + 0 NA Intergenic Intergenic -9246 ENSMUSG00000072774.10 ENSMUSG00000072774 ENSMUST00000191135 Zfp951 protein_coding Interval_53116 chr14 54540753 54541711 + 0 NA TTS (ENSMUSG00000022177.9) protein_coding-TTS (ENSMUSG00000022177.9) 13213 ENSMUSG00000022177.9 ENSMUSG00000022177 ENSMUST00000228043 Haus4 protein_coding Interval_84005 chr19 6057335 6058451 + 0 NA promoter-TSS (ENSMUSG00000007338.10) protein_coding-promoter-TSS (ENSMUSG00000007338.10) -49 ENSMUSG00000038274.13 ENSMUSG00000038274 ENSMUST00000237840 Fau protein_coding Interval_42711 chr13 18397724 18398649 + 0 NA promoter-TSS (ENSMUSG00000009734.18) protein_coding-promoter-TSS (ENSMUSG00000009734.18) -500 ENSMUSG00000009734.18 ENSMUSG00000009734 ENSMUST00000222900 Pou6f2 protein_coding Interval_107371 chr3 106957154 106957379 + 0 NA intron (ENSMUSG00000098108.7, intron 2 of 5) antisense-intron (ENSMUSG00000098108.7, intron 2 of 5) -77905 ENSMUSG00000105102.1 ENSMUSG00000105102 ENSMUST00000197932 Gm35507 lincRNA Interval_69524 chr16 94038277 94038994 + 0 NA Intergenic Intergenic 22693 ENSMUSG00000116939.1 ENSMUSG00000116939 ENSMUST00000232441 Gm49619 processed_pseudogene Interval_6135 chr1 97821544 97821907 + 0 NA TTS (ENSMUSG00000026335.16) protein_coding-TTS (ENSMUSG00000026335.16) 44326 ENSMUSG00000026333.14 ENSMUSG00000026333 ENSMUST00000189031 Gin1 protein_coding Interval_169674 chr9 100203896 100204801 + 0 NA Intergenic Intergenic -30202 ENSMUSG00000103407.1 ENSMUSG00000103407 ENSMUST00000192569 4930540E01Rik TEC Interval_126193 chr5 82023975 82024439 + 0 NA Intergenic Intergenic 97155 ENSMUSG00000106860.1 ENSMUSG00000106860 ENSMUST00000201220 1700008H02Rik TEC Interval_170769 chr9 110638078 110638735 + 0 NA TTS (ENSMUSG00000056724.15) protein_coding-TTS (ENSMUSG00000056724.15) -2291 ENSMUSG00000099275.1 ENSMUSG00000099275 ENSMUST00000184024 Mir8107 miRNA Interval_135930 chr6 48840914 48841797 + 0 NA promoter-TSS (ENSMUSG00000023367.14) protein_coding-promoter-TSS (ENSMUSG00000023367.14) -167 ENSMUSG00000023367.14 ENSMUSG00000023367 ENSMUST00000204309 Tmem176a protein_coding Interval_95188 chr2 104624270 104625463 + 0 NA intron (ENSMUSG00000027176.8, intron 3 of 20) protein_coding-intron (ENSMUSG00000027176.8, intron 3 of 20) 34248 ENSMUSG00000027176.8 ENSMUSG00000027176 ENSMUST00000126539 Cstf3 protein_coding Interval_60311 chr15 72761685 72762169 + 0 NA intron (ENSMUSG00000047921.17, intron 16 of 21) protein_coding-intron (ENSMUSG00000047921.17, intron 16 of 21) 36523 ENSMUSG00000116314.1 ENSMUSG00000116314 ENSMUST00000229330 Gm49459 processed_pseudogene Interval_159910 chr8 105123728 105124301 + 0 NA Intergenic Intergenic -7786 ENSMUSG00000060560.8 ENSMUSG00000060560 ENSMUST00000161289 Ces4a protein_coding Interval_26933 chr11 61671701 61672045 + 0 NA TTS (ENSMUSG00000042371.12) protein_coding-TTS (ENSMUSG00000042371.12) 2827 ENSMUSG00000004837.2 ENSMUSG00000004837 ENSMUST00000155380 Grap protein_coding Interval_58970 chr15 41154826 41156014 + 0 NA Intergenic Intergenic -18067 ENSMUSG00000048559.5 ENSMUSG00000048559 ENSMUST00000060066 4930555K19Rik processed_pseudogene Interval_37540 chr12 69701479 69702560 + 0 NA intron (ENSMUSG00000020988.9, intron 7 of 9) protein_coding-intron (ENSMUSG00000020988.9, intron 7 of 9) 22754 ENSMUSG00000020988.9 ENSMUSG00000020988 ENSMUST00000223387 L2hgdh protein_coding Interval_106806 chr3 100989642 100990446 + 0 NA Intergenic Intergenic -30049 ENSMUSG00000033222.16 ENSMUSG00000033222 ENSMUST00000200506 Ttf2 protein_coding Interval_61594 chr15 82851554 82852966 + 0 NA exon (ENSMUSG00000041852.15, exon 2 of 5) protein_coding-exon (ENSMUSG00000041852.15, exon 2 of 5) -46820 ENSMUSG00000100199.1 ENSMUSG00000100199 ENSMUST00000186291 Gm20324 antisense Interval_2410 chr1 39086186 39086559 + 0 NA Intergenic Intergenic -3034 ENSMUSG00000103182.1 ENSMUSG00000103182 ENSMUST00000195455 Gm37091 TEC Interval_69116 chr16 90762764 90763258 + 0 NA intron (ENSMUSG00000039929.14, intron 30 of 38) protein_coding-intron (ENSMUSG00000039929.14, intron 30 of 38) 24687 ENSMUSG00000039956.9 ENSMUSG00000039956 ENSMUST00000038197 Mrap protein_coding Interval_145722 chr7 37775448 37775908 + 0 NA Intergenic Intergenic 48669 ENSMUSG00000064591.1 ENSMUSG00000064591 ENSMUST00000082657 Gm22302 snRNA Interval_91770 chr2 49412446 49413140 + 0 NA Intergenic Intergenic -14278 ENSMUSG00000077769.1 ENSMUSG00000077769 ENSMUST00000104581 Gm25215 snoRNA Interval_118937 chr4 134551574 134552527 + 0 NA exon (ENSMUSG00000050989.9, exon 1 of 12) protein_coding-exon (ENSMUSG00000050989.9, exon 1 of 12) -11028 ENSMUSG00000050989.9 ENSMUSG00000050989 ENSMUST00000127585 Selenon protein_coding Interval_50534 chr14 14749705 14750282 + 0 NA intron (ENSMUSG00000021733.11, intron 8 of 23) protein_coding-intron (ENSMUSG00000021733.11, intron 8 of 24) 46914 ENSMUSG00000021733.11 ENSMUSG00000021733 ENSMUST00000225613 Slc4a7 protein_coding Interval_108057 chr3 121200311 121201605 + 0 NA TTS (ENSMUSG00000028132.15) protein_coding-TTS (ENSMUSG00000028132.15) -19861 ENSMUSG00000098042.1 ENSMUSG00000098042 ENSMUST00000183020 Gm5710 processed_pseudogene Interval_135729 chr6 45325266 45325464 + 0 NA intron (ENSMUSG00000039419.17, intron 2 of 3) protein_coding-intron (ENSMUSG00000039419.17, intron 1 of 23) -1037 ENSMUSG00000107433.1 ENSMUSG00000107433 ENSMUST00000204871 Gm43882 TEC Interval_70076 chr17 5150659 5151150 + 0 NA intron (ENSMUSG00000069729.14, intron 4 of 19) protein_coding-intron (ENSMUSG00000069729.14, intron 4 of 18) -38794 ENSMUSG00000081783.2 ENSMUSG00000081783 ENSMUST00000122283 Gm15599 processed_pseudogene Interval_83472 chr18 86438269 86438549 + 0 NA intron (ENSMUSG00000050321.3, intron 4 of 10) protein_coding-intron (ENSMUSG00000050321.3, intron 4 of 10) 35520 ENSMUSG00000117778.1 ENSMUSG00000117778 ENSMUST00000236142 Gm50384 antisense Interval_20163 chr10 115350577 115351246 + 0 NA intron (ENSMUSG00000069520.6, intron 3 of 6) protein_coding-intron (ENSMUSG00000069520.6, intron 3 of 6) 11582 ENSMUSG00000069520.6 ENSMUSG00000069520 ENSMUST00000219597 Tmem19 protein_coding Interval_96938 chr2 129699457 129700023 + 0 NA promoter-TSS (ENSMUSG00000027400.11) protein_coding-promoter-TSS (ENSMUSG00000027400.11) 104 ENSMUSG00000027400.11 ENSMUSG00000027400 ENSMUST00000152113 Pdyn protein_coding Interval_93413 chr2 72934422 72934654 + 0 NA Intergenic Intergenic 16449 ENSMUSG00000092851.1 ENSMUSG00000092851 ENSMUST00000175110 Gm25960 miRNA Interval_80397 chr18 41755412 41755607 + 0 NA exon (ENSMUSG00000117745.1, exon 3 of 4) lincRNA-exon (ENSMUSG00000117745.1, exon 3 of 4) 115715 ENSMUSG00000117708.1 ENSMUSG00000117708 ENSMUST00000237940 Gm18530 processed_pseudogene Interval_7094 chr1 125687558 125688985 + 0 NA intron (ENSMUSG00000026343.6, intron 1 of 1) protein_coding-intron (ENSMUSG00000026343.6, intron 1 of 1) -19655 ENSMUSG00000101015.1 ENSMUSG00000101015 ENSMUST00000191239 Gm18444 processed_pseudogene Interval_124070 chr5 38029454 38029704 + 0 NA Intergenic Intergenic -1570 ENSMUSG00000107129.1 ENSMUSG00000107129 ENSMUST00000201521 Gm43762 TEC Interval_19998 chr10 111841594 111844242 + 0 NA intron (ENSMUSG00000112430.1, intron 3 of 3) lincRNA-intron (ENSMUSG00000112430.1, intron 3 of 3) -12974 ENSMUSG00000112321.1 ENSMUSG00000112321 ENSMUST00000220048 Gm47866 processed_pseudogene Interval_44239 chr13 42720172 42720911 + 0 NA intron (ENSMUSG00000054728.17, intron 3 of 13) protein_coding-intron (ENSMUSG00000054728.17, intron 1 of 11) 67717 ENSMUSG00000089710.1 ENSMUSG00000089710 ENSMUST00000160241 Gm15810 antisense Interval_39468 chr12 88068887 88069137 + 0 NA Intergenic Intergenic 2469 ENSMUSG00000113419.1 ENSMUSG00000113419 ENSMUST00000222643 Gm5789 processed_pseudogene Interval_63062 chr15 98895311 98896307 + 0 NA TTS (ENSMUSG00000116033.1) antisense-TTS (ENSMUSG00000116033.1) 2458 ENSMUSG00000116033.1 ENSMUSG00000116033 ENSMUST00000230242 Gm49442 antisense Interval_124353 chr5 44386322 44386672 + 0 NA Intergenic Intergenic 20096 ENSMUSG00000104923.1 ENSMUSG00000104923 ENSMUST00000198713 Gm5865 processed_pseudogene Interval_65357 chr16 21818077 21818850 + 0 NA intron (ENSMUSG00000033618.7, intron 2 of 14) protein_coding-intron (ENSMUSG00000033618.7, intron 2 of 14) -7479 ENSMUSG00000033618.7 ENSMUSG00000033618 ENSMUST00000042065 Map3k13 protein_coding Interval_145617 chr7 36048123 36048620 + 0 NA Intergenic Intergenic -49007 ENSMUSG00000108711.1 ENSMUSG00000108711 ENSMUST00000205504 Gm38991 lincRNA Interval_44143 chr13 41187536 41188311 + 0 NA intron (ENSMUSG00000021364.16, intron 5 of 7) protein_coding-intron (ENSMUSG00000021364.16, intron 5 of 7) 11035 ENSMUSG00000114388.1 ENSMUSG00000114388 ENSMUST00000225455 Gm48510 lincRNA Interval_19910 chr10 111144068 111144789 + 0 NA Intergenic Intergenic -11788 ENSMUSG00000111968.1 ENSMUSG00000111968 ENSMUST00000217847 Gm8873 processed_pseudogene Interval_69980 chr17 3792759 3793517 + 0 NA Intergenic Intergenic -96877 ENSMUSG00000023802.4 ENSMUSG00000023802 ENSMUST00000115800 Nox3 protein_coding Interval_138065 chr6 84932714 84933019 + 0 NA intron (ENSMUSG00000033769.16, intron 5 of 13) protein_coding-intron (ENSMUSG00000033769.16, intron 6 of 16) 11743 ENSMUSG00000108012.1 ENSMUSG00000108012 ENSMUST00000204154 Gm44012 antisense Interval_161064 chr8 117256097 117257513 + 0 NA promoter-TSS (ENSMUSG00000034390.16) protein_coding-promoter-TSS (ENSMUSG00000034390.16) 98668 ENSMUSG00000052557.11 ENSMUSG00000052557 ENSMUST00000162997 Gan protein_coding Interval_136464 chr6 54698692 54699848 + 0 NA exon (ENSMUSG00000038065.13, exon 3 of 3) protein_coding-exon (ENSMUSG00000038065.13, exon 3 of 3) 5624 ENSMUSG00000108283.1 ENSMUSG00000108283 ENSMUST00000204345 Gm44008 TEC Interval_9545 chr1 159252881 159253462 + 0 NA intron (ENSMUSG00000040782.12, intron 5 of 5) protein_coding-intron (ENSMUSG00000040782.12, intron 6 of 19) 17461 ENSMUSG00000103572.1 ENSMUSG00000103572 ENSMUST00000193750 Gm37115 TEC Interval_124292 chr5 43663374 43663567 + 0 NA intron (ENSMUSG00000039765.15, intron 1 of 39) protein_coding-intron (ENSMUSG00000039765.15, intron 1 of 39) -8819 ENSMUSG00000039765.15 ENSMUSG00000039765 ENSMUST00000127355 Cc2d2a protein_coding Interval_171116 chr9 114616953 114617344 + 0 NA TTS (ENSMUSG00000056167.8) protein_coding-TTS (ENSMUSG00000056167.8) -14956 ENSMUSG00000087925.1 ENSMUSG00000087925 ENSMUST00000157300 Gm23232 snRNA Interval_79707 chr18 34637243 34640078 + 0 NA promoter-TSS (ENSMUSG00000024370.17) protein_coding-promoter-TSS (ENSMUSG00000024370.17) -789 ENSMUSG00000024370.17 ENSMUSG00000024370 ENSMUST00000135208 Cdc23 protein_coding Interval_35024 chr12 16718699 16719554 + 0 NA intron (ENSMUSG00000036523.16, intron 9 of 34) protein_coding-intron (ENSMUSG00000036523.16, intron 7 of 32) 46886 ENSMUSG00000114049.1 ENSMUSG00000114049 ENSMUST00000223113 Gm48140 antisense Interval_167772 chr9 72654943 72655514 + 0 NA Intergenic Intergenic -7118 ENSMUSG00000032216.15 ENSMUSG00000032216 ENSMUST00000184287 Nedd4 protein_coding Interval_144625 chr7 27202541 27203853 + 0 NA intron (ENSMUSG00000078786.9, intron 5 of 5) protein_coding-intron (ENSMUSG00000078786.9, intron 6 of 7) -2339 ENSMUSG00000080533.1 ENSMUSG00000080533 ENSMUST00000116883 Mir1191 miRNA Interval_138045 chr6 84579050 84579254 + 0 NA intron (ENSMUSG00000063415.12, intron 1 of 4) protein_coding-intron (ENSMUSG00000063415.12, intron 3 of 6) 8528 ENSMUSG00000063415.12 ENSMUSG00000063415 ENSMUST00000204109 Cyp26b1 protein_coding Interval_119883 chr4 140673390 140674817 + 0 NA Intergenic Intergenic -5650 ENSMUSG00000086159.1 ENSMUSG00000086159 ENSMUST00000141469 Gm13025 lincRNA Interval_96259 chr2 121025126 121025509 + 0 NA intron (ENSMUSG00000023216.13, intron 3 of 6) protein_coding-intron (ENSMUSG00000023216.13, intron 9 of 9) 11428 ENSMUSG00000023216.13 ENSMUSG00000023216 ENSMUST00000152217 Epb42 protein_coding Interval_23374 chr11 21996026 21997292 + 0 NA TTS (ENSMUSG00000005917.15) protein_coding-TTS (ENSMUSG00000005917.15) 5051 ENSMUSG00000005917.15 ENSMUSG00000005917 ENSMUST00000147486 Otx1 protein_coding Interval_163528 chr9 21870734 21871562 + 0 NA Intergenic Intergenic -1126 ENSMUSG00000111766.1 ENSMUSG00000111766 ENSMUST00000216356 Gm47873 unitary_pseudogene Interval_119403 chr4 137488668 137490171 + 0 NA intron (ENSMUSG00000028763.18, intron 1 of 96) protein_coding-intron (ENSMUSG00000028763.18, intron 1 of 96) -33040 ENSMUSG00000028763.18 ENSMUSG00000028763 ENSMUST00000155648 Hspg2 protein_coding Interval_77005 chr17 85595299 85596519 + 0 NA Intergenic Intergenic -3624 ENSMUSG00000098438.1 ENSMUSG00000098438 ENSMUST00000184962 Gm27178 processed_pseudogene Interval_30703 chr11 95998967 95999516 + 0 NA intron (ENSMUSG00000013415.9, intron 2 of 14) protein_coding-intron (ENSMUSG00000013415.9, intron 2 of 14) -6648 ENSMUSG00000099928.1 ENSMUSG00000099928 ENSMUST00000191263 Gm29202 antisense Interval_169705 chr9 100528535 100528784 + 0 NA intron (ENSMUSG00000032475.15, intron 1 of 2) protein_coding-intron (ENSMUSG00000032475.15, intron 1 of 3) 2412 ENSMUSG00000100176.1 ENSMUSG00000100176 ENSMUST00000189857 Gm28586 sense_intronic Interval_75225 chr17 64908699 64909027 + 0 NA Intergenic Intergenic 32662 ENSMUSG00000117203.1 ENSMUSG00000117203 ENSMUST00000233516 Gm4701 processed_pseudogene Interval_40736 chr12 108041696 108042372 + 0 NA Intergenic Intergenic -38620 ENSMUSG00000048251.15 ENSMUSG00000048251 ENSMUST00000109891 Bcl11b protein_coding Interval_123726 chr5 34933252 34933738 + 0 NA Intergenic Intergenic 18407 ENSMUSG00000051246.3 ENSMUSG00000051246 ENSMUST00000202205 Msantd1 protein_coding Interval_27510 chr11 68313593 68314213 + 0 NA intron (ENSMUSG00000020902.12, intron 3 of 7) protein_coding-intron (ENSMUSG00000020902.12, intron 2 of 6) -43024 ENSMUSG00000084993.1 ENSMUSG00000084993 ENSMUST00000151817 Gm12305 sense_intronic Interval_107852 chr3 116282324 116282645 + 0 NA intron (ENSMUSG00000033502.15, intron 13 of 13) protein_coding-intron (ENSMUSG00000033502.15, intron 15 of 15) -29021 ENSMUSG00000068696.6 ENSMUSG00000068696 ENSMUST00000199128 Gpr88 protein_coding Interval_42727 chr13 18614702 18615455 + 0 NA Intergenic Intergenic 30271 ENSMUSG00000114118.1 ENSMUSG00000114118 ENSMUST00000221183 Gm48829 lincRNA Interval_65396 chr16 22116066 22116465 + 0 NA intron (ENSMUSG00000033581.17, intron 1 of 4) protein_coding-intron (ENSMUSG00000033581.17, intron 2 of 15) 4971 ENSMUSG00000033581.17 ENSMUSG00000033581 ENSMUST00000127696 Igf2bp2 protein_coding Interval_71374 chr17 22775893 22776122 + 0 NA Intergenic Intergenic 31729 ENSMUSG00000117333.1 ENSMUSG00000117333 ENSMUST00000233975 Gm16386 processed_pseudogene Interval_160640 chr8 111264958 111265400 + 0 NA Intergenic Intergenic -5963 ENSMUSG00000003316.14 ENSMUSG00000003316 ENSMUST00000003404 Glg1 protein_coding Interval_152955 chr7 140035942 140037244 + 0 NA promoter-TSS (ENSMUSG00000025474.9) protein_coding-promoter-TSS (ENSMUSG00000025474.9) 76 ENSMUSG00000025474.9 ENSMUSG00000025474 ENSMUST00000209574 Tubgcp2 protein_coding Interval_25617 chr11 50224435 50226029 + 0 NA promoter-TSS (ENSMUSG00000036620.14) protein_coding-promoter-TSS (ENSMUSG00000036620.14) -5508 ENSMUSG00000036620.14 ENSMUSG00000036620 ENSMUST00000122977 Mgat4b protein_coding Interval_165225 chr9 45501679 45502758 + 0 NA intron (ENSMUSG00000032087.11, intron 3 of 32) protein_coding-intron (ENSMUSG00000032087.11, intron 3 of 32) -70488 ENSMUSG00000097074.2 ENSMUSG00000097074 ENSMUST00000215652 4833428L15Rik antisense Interval_126694 chr5 92101190 92102452 + 0 NA Intergenic Intergenic 16462 ENSMUSG00000088949.1 ENSMUSG00000088949 ENSMUST00000158324 Gm24931 rRNA Interval_95206 chr2 104784562 104785045 + 0 NA intron (ENSMUSG00000074994.6, intron 4 of 12) protein_coding-intron (ENSMUSG00000074994.6, intron 3 of 11) 31957 ENSMUSG00000074994.6 ENSMUSG00000074994 ENSMUST00000238887 Qser1 protein_coding Interval_22203 chr11 7144506 7145057 + 0 NA exon (ENSMUSG00000020431.5, exon 9 of 20) protein_coding-exon (ENSMUSG00000020431.5, exon 9 of 20) -15101 ENSMUSG00000020431.5 ENSMUSG00000020431 ENSMUST00000135398 Adcy1 protein_coding Interval_143850 chr7 16750049 16750711 + 0 NA Intergenic Intergenic 11842 ENSMUSG00000008036.11 ENSMUSG00000008036 ENSMUST00000141496 Ap2s1 protein_coding Interval_141066 chr6 124779340 124780115 + 0 NA promoter-TSS (ENSMUSG00000030125.11) protein_coding-promoter-TSS (ENSMUSG00000030125.11) -23 ENSMUSG00000030125.11 ENSMUSG00000030125 ENSMUST00000147669 Lrrc23 protein_coding Interval_15857 chr10 58453898 58454115 + 0 NA intron (ENSMUSG00000003226.7, intron 3 of 7) protein_coding-intron (ENSMUSG00000003226.7, intron 3 of 28) 6811 ENSMUSG00000003226.7 ENSMUSG00000003226 ENSMUST00000220131 Ranbp2 protein_coding Interval_131086 chr5 135008363 135010152 + 0 NA promoter-TSS (ENSMUSG00000040532.14) protein_coding-promoter-TSS (ENSMUSG00000040532.14) -156 ENSMUSG00000040532.14 ENSMUSG00000040532 ENSMUST00000148831 Abhd11 protein_coding Interval_53776 chr14 61680878 61683220 + 0 NA promoter-TSS (ENSMUSG00000102151.1) TEC-promoter-TSS (ENSMUSG00000102151.1) -555 ENSMUSG00000102151.1 ENSMUSG00000102151 ENSMUST00000192342 Gm37472 TEC Interval_8294 chr1 136979609 136980960 + 0 NA Intergenic Intergenic 9986 ENSMUSG00000088970.1 ENSMUSG00000088970 ENSMUST00000158345 Gm23763 snRNA Interval_128208 chr5 111741552 111742102 + 0 NA intron (ENSMUSG00000085271.7, intron 2 of 4) lincRNA-intron (ENSMUSG00000085271.7, intron 2 of 4) -1022 ENSMUSG00000085919.1 ENSMUSG00000085919 ENSMUST00000149538 Gm16019 lincRNA Interval_10135 chr1 166001381 166003667 + 0 NA promoter-TSS (ENSMUSG00000026565.18) protein_coding-promoter-TSS (ENSMUSG00000026565.18) -436 ENSMUSG00000097196.2 ENSMUSG00000097196 ENSMUST00000181378 Gm26665 lincRNA Interval_42560 chr13 15475959 15476378 + 0 NA intron (ENSMUSG00000021318.15, intron 1 of 9) protein_coding-intron (ENSMUSG00000021318.15, intron 1 of 14) -12432 ENSMUSG00000097806.3 ENSMUSG00000097806 ENSMUST00000193256 Gm6556 processed_transcript Interval_1572 chr1 27032376 27033583 + 0 NA Intergenic Intergenic -73758 ENSMUSG00000095256.1 ENSMUSG00000095256 ENSMUST00000179494 n-R5s209 rRNA Interval_85402 chr19 25516683 25518347 + 0 NA intron (ENSMUSG00000024837.15, intron 2 of 3) protein_coding-intron (ENSMUSG00000024837.15, intron 2 of 4) 11808 ENSMUSG00000024837.15 ENSMUSG00000024837 ENSMUST00000160814 Dmrt1 protein_coding Interval_134174 chr6 22361141 22361411 + 0 NA Intergenic Intergenic -17363 ENSMUSG00000029672.16 ENSMUSG00000029672 ENSMUST00000168965 Fam3c protein_coding Interval_136375 chr6 53924312 53925559 + 0 NA intron (ENSMUSG00000052955.5, intron 11 of 12) protein_coding-intron (ENSMUSG00000052955.5, intron 11 of 12) -52787 ENSMUSG00000094527.1 ENSMUSG00000094527 ENSMUST00000178568 Gm22910 snoRNA Interval_107008 chr3 102865570 102866831 + 0 NA intron (ENSMUSG00000027855.13, intron 22 of 32) protein_coding-intron (ENSMUSG00000027855.13, intron 22 of 32) -14580 ENSMUSG00000105938.1 ENSMUSG00000105938 ENSMUST00000196911 Gm33866 processed_pseudogene Interval_146453 chr7 46032836 46034498 + 0 NA promoter-TSS (ENSMUSG00000030835.6) protein_coding-promoter-TSS (ENSMUSG00000030835.6) -20493 ENSMUSG00000030835.6 ENSMUSG00000030835 ENSMUST00000182305 Nomo1 protein_coding Interval_113394 chr4 54328670 54329229 + 0 NA Intergenic Intergenic -93073 ENSMUSG00000083624.1 ENSMUSG00000083624 ENSMUST00000117623 Gm12469 processed_pseudogene Interval_68662 chr16 84008959 84010027 + 0 NA Intergenic Intergenic 47891 ENSMUSG00000116745.1 ENSMUSG00000116745 ENSMUST00000231610 Gm41481 lincRNA Interval_16996 chr10 70330415 70330877 + 0 NA Intergenic Intergenic -7656 ENSMUSG00000112676.1 ENSMUSG00000112676 ENSMUST00000219977 Gm20108 processed_pseudogene Interval_158296 chr8 80911498 80912083 + 0 NA Intergenic Intergenic -21887 ENSMUSG00000098223.1 ENSMUSG00000098223 ENSMUST00000182279 Gm4891 processed_pseudogene Interval_130280 chr5 125384498 125385587 + 0 NA TTS (ENSMUSG00000008348.9) protein_coding-TTS (ENSMUSG00000008348.9) -4280 ENSMUSG00000072612.3 ENSMUSG00000072612 ENSMUST00000238478 Gm10382 antisense Interval_60811 chr15 76903818 76905023 + 0 NA exon (ENSMUSG00000003970.9, exon 2 of 6) protein_coding-exon (ENSMUSG00000003970.9, exon 2 of 6) 117 ENSMUSG00000003970.9 ENSMUSG00000003970 ENSMUST00000229591 Rpl8 protein_coding Interval_37785 chr12 71976777 71976998 + 0 NA intron (ENSMUSG00000034574.10, intron 20 of 25) protein_coding-intron (ENSMUSG00000034574.10, intron 20 of 25) 72372 ENSMUSG00000114155.1 ENSMUSG00000114155 ENSMUST00000221336 Gm7986 processed_pseudogene Interval_94144 chr2 84663008 84663311 + 0 NA intron (ENSMUSG00000086598.9, intron 4 of 4) protein_coding-intron (ENSMUSG00000086598.9, intron 4 of 4) 4080 ENSMUSG00000086598.9 ENSMUSG00000086598 ENSMUST00000133437 Btbd18 protein_coding Interval_141131 chr6 125171796 125173055 + 0 NA promoter-TSS (ENSMUSG00000038252.13) protein_coding-promoter-TSS (ENSMUSG00000038252.13) 4313 ENSMUSG00000038252.13 ENSMUSG00000038252 ENSMUST00000189959 Ncapd2 protein_coding Interval_43470 chr13 31629091 31630164 + 0 NA intron (ENSMUSG00000038402.2, intron 1 of 1) protein_coding-intron (ENSMUSG00000038402.2, intron 1 of 1) -3084 ENSMUSG00000098266.1 ENSMUSG00000098266 ENSMUST00000184237 Gm27516 miRNA Interval_48248 chr13 97432408 97436646 + 0 NA promoter-TSS (ENSMUSG00000078952.9) lincRNA-promoter-TSS (ENSMUSG00000078952.9) 24550 ENSMUSG00000098238.1 ENSMUSG00000098238 ENSMUST00000183250 Gm8756 processed_pseudogene Interval_21887 chr11 4986540 4987564 + 0 NA intron (ENSMUSG00000009090.17, intron 1 of 2) protein_coding-intron (ENSMUSG00000009090.17, intron 1 of 20) -38988 ENSMUSG00000020396.8 ENSMUSG00000020396 ENSMUST00000093369 Nefh protein_coding Interval_52591 chr14 47751606 47752045 + 0 NA Intergenic Intergenic 5668 ENSMUSG00000115719.1 ENSMUSG00000115719 ENSMUST00000226197 4930538L07Rik lincRNA Interval_143185 chr7 4312921 4313999 + 0 NA Intergenic Intergenic 12112 ENSMUSG00000108743.1 ENSMUSG00000108743 ENSMUST00000205425 Gm44881 processed_pseudogene Interval_77629 chr17 93323446 93324746 + 0 NA Intergenic Intergenic -6835 ENSMUSG00000117362.1 ENSMUSG00000117362 ENSMUST00000234454 Gm9665 processed_pseudogene Interval_26144 chr11 54731921 54732178 + 0 NA intron (ENSMUSG00000086039.1, intron 3 of 3) protein_coding-intron (ENSMUSG00000052298.12, intron 3 of 5) 3372 ENSMUSG00000086039.1 ENSMUSG00000086039 ENSMUST00000147847 Gm12227 antisense Interval_155023 chr8 25763101 25764227 + 0 NA TTS (ENSMUSG00000037316.9) protein_coding-TTS (ENSMUSG00000037316.9) 9184 ENSMUSG00000091514.2 ENSMUSG00000091514 ENSMUST00000167899 Gm17484 lincRNA Interval_171454 chr9 118462413 118462775 + 0 NA Intergenic Intergenic 4470 ENSMUSG00000084515.1 ENSMUSG00000084515 ENSMUST00000122566 Gm22479 snRNA Interval_87448 chr19 51348381 51349144 + 0 NA Intergenic Intergenic -108966 ENSMUSG00000065143.1 ENSMUSG00000065143 ENSMUST00000083209 Gm25644 snRNA Interval_120104 chr4 141857208 141858079 + 0 NA TTS (ENSMUSG00000040659.3) protein_coding-TTS (ENSMUSG00000040659.3) -11380 ENSMUSG00000062478.16 ENSMUSG00000062478 ENSMUST00000136064 Ctrc protein_coding Interval_126243 chr5 83866604 83866840 + 0 NA Intergenic Intergenic 3559 ENSMUSG00000106576.1 ENSMUSG00000106576 ENSMUST00000197408 Gm4866 unprocessed_pseudogene Interval_10109 chr1 165860938 165862238 + 0 NA TTS (ENSMUSG00000005763.15) protein_coding-TTS (ENSMUSG00000005763.15) -12544 ENSMUSG00000102154.1 ENSMUSG00000102154 ENSMUST00000193728 Gm37469 antisense Interval_66633 chr16 35768801 35771588 + 0 NA promoter-TSS (ENSMUSG00000022848.8) protein_coding-promoter-TSS (ENSMUSG00000022848.8) -213 ENSMUSG00000022849.5 ENSMUSG00000022849 ENSMUST00000023555 Hspbap1 protein_coding Interval_98191 chr2 149666859 149667072 + 0 NA Intergenic Intergenic -76210 ENSMUSG00000081494.1 ENSMUSG00000081494 ENSMUST00000118417 Gm14130 processed_pseudogene Interval_99874 chr2 165428495 165428934 + 0 NA intron (ENSMUSG00000018459.15, intron 5 of 11) protein_coding-intron (ENSMUSG00000018459.15, intron 6 of 12) -13550 ENSMUSG00000085358.1 ENSMUSG00000085358 ENSMUST00000152284 Gm14437 antisense Interval_85719 chr19 30017566 30018304 + 0 NA Intergenic Intergenic 14145 ENSMUSG00000024815.5 ENSMUSG00000024815 ENSMUST00000025727 Trpd52l3 protein_coding Interval_111361 chr4 19689618 19689892 + 0 NA intron (ENSMUSG00000041058.15, intron 1 of 24) protein_coding-intron (ENSMUSG00000041058.15, intron 1 of 24) 19238 ENSMUSG00000041058.15 ENSMUSG00000041058 ENSMUST00000035982 Wwp1 protein_coding Interval_74030 chr17 46168592 46168784 + 0 NA TTS (ENSMUSG00000023952.13) protein_coding-TTS (ENSMUSG00000023952.13) 7622 ENSMUSG00000023952.13 ENSMUSG00000023952 ENSMUST00000166663 Gtpbp2 protein_coding Interval_27395 chr11 67298339 67298602 + 0 NA exon (ENSMUSG00000055775.16, exon 27 of 40) protein_coding-exon (ENSMUSG00000055775.16, exon 27 of 40) 18479 ENSMUSG00000055775.16 ENSMUSG00000055775 ENSMUST00000139052 Myh8 protein_coding Interval_40821 chr12 108653396 108654255 + 0 NA intron (ENSMUSG00000021262.15, intron 3 of 12) protein_coding-intron (ENSMUSG00000021262.15, intron 3 of 13) -4795 ENSMUSG00000065436.1 ENSMUSG00000065436 ENSMUST00000083502 Mir342 miRNA Interval_152891 chr7 139518056 139518944 + 0 NA exon (ENSMUSG00000025477.14, exon 1 of 1) protein_coding-exon (ENSMUSG00000025477.14, exon 1 of 1) 1841 ENSMUSG00000025477.14 ENSMUSG00000025477 ENSMUST00000152475 Inpp5a protein_coding Interval_76693 chr17 83538203 83539467 + 0 NA Intergenic Intergenic -34329 ENSMUSG00000024248.14 ENSMUSG00000024248 ENSMUST00000234258 Cox7a2l protein_coding Interval_117565 chr4 124695963 124696418 + 0 NA Intergenic Intergenic 1417 ENSMUSG00000088067.1 ENSMUSG00000088067 ENSMUST00000157442 Gm24480 snRNA Interval_16792 chr10 68196081 68196885 + 0 NA intron (ENSMUSG00000019947.10, intron 3 of 9) protein_coding-intron (ENSMUSG00000019947.10, intron 3 of 10) 82257 ENSMUSG00000019947.10 ENSMUSG00000019947 ENSMUST00000218425 Arid5b protein_coding Interval_51304 chr14 25864137 25864723 + 0 NA intron (ENSMUSG00000098609.1, intron 1 of 1) protein_coding-intron (ENSMUSG00000021866.15, intron 1 of 14) 5836 ENSMUSG00000098609.1 ENSMUSG00000098609 ENSMUST00000184083 Anxa11os antisense Interval_53533 chr14 58567566 58568016 + 0 NA Intergenic Intergenic 82609 ENSMUSG00000077201.1 ENSMUSG00000077201 ENSMUST00000104013 Gm25614 snoRNA Interval_149369 chr7 97757156 97758175 + 0 NA Intergenic Intergenic -19376 ENSMUSG00000042797.9 ENSMUSG00000042797 ENSMUST00000205932 Aqp11 protein_coding Interval_31907 chr11 103759961 103760264 + 0 NA Intergenic Intergenic -10291 ENSMUSG00000018486.2 ENSMUSG00000018486 ENSMUST00000018630 Wnt9b protein_coding Interval_60289 chr15 72434027 72434206 + 0 NA Intergenic Intergenic 56903 ENSMUSG00000095149.1 ENSMUSG00000095149 ENSMUST00000179578 Gm24390 snRNA Interval_92788 chr2 65433881 65434343 + 0 NA Intergenic Intergenic -57830 ENSMUSG00000088197.1 ENSMUSG00000088197 ENSMUST00000157572 Gm24138 snoRNA Interval_97850 chr2 144433719 144433997 + 0 NA Intergenic Intergenic -30537 ENSMUSG00000083674.3 ENSMUSG00000083674 ENSMUST00000137929 Zfp133-ps transcribed_unitary_pseudogene Interval_51402 chr14 27237654 27239008 + 0 NA exon (ENSMUSG00000114888.1, exon 1 of 1) TEC-exon (ENSMUSG00000114888.1, exon 1 of 1) 269 ENSMUSG00000114888.1 ENSMUSG00000114888 ENSMUST00000225718 Gm49616 TEC Interval_151893 chr7 127375328 127376556 + 0 NA promoter-TSS (ENSMUSG00000054381.5) protein_coding-promoter-TSS (ENSMUSG00000054381.5) 74 ENSMUSG00000054381.5 ENSMUSG00000054381 ENSMUST00000206942 Zfp747 protein_coding Interval_122304 chr5 21068101 21068439 + 0 NA Intergenic Intergenic -12373 ENSMUSG00000028771.13 ENSMUSG00000028771 ENSMUST00000140057 Ptpn12 protein_coding Interval_26268 chr11 55520920 55521179 + 0 NA exon (ENSMUSG00000000263.15, exon 8 of 9) protein_coding-exon (ENSMUSG00000000263.15, exon 8 of 9) 6203 ENSMUSG00000086460.1 ENSMUSG00000086460 ENSMUST00000152968 Gm12236 antisense Interval_31402 chr11 100471749 100473297 + 0 NA exon (ENSMUSG00000048732.5, exon 1 of 2) protein_coding-exon (ENSMUSG00000048732.5, exon 1 of 2) 218 ENSMUSG00000048732.5 ENSMUSG00000048732 ENSMUST00000056665 Klhl11 protein_coding Interval_111183 chr4 14448584 14449196 + 0 NA Intergenic Intergenic 14999 ENSMUSG00000081239.3 ENSMUSG00000081239 ENSMUST00000121022 Gm11836 processed_pseudogene Interval_36299 chr12 40898561 40899937 + 0 NA Intergenic Intergenic 5764 ENSMUSG00000113337.1 ENSMUSG00000113337 ENSMUST00000222682 Gm19220 processed_pseudogene Interval_53055 chr14 54059903 54060484 + 0 NA Intergenic Intergenic -14712 ENSMUSG00000076867.2 ENSMUSG00000076867 ENSMUST00000103679 Trdv4 TR_V_gene Interval_34962 chr12 15764542 15766428 + 0 NA Intergenic Intergenic 35616 ENSMUSG00000098480.1 ENSMUSG00000098480 ENSMUST00000184042 Mir6387 miRNA Interval_116579 chr4 115846868 115847360 + 0 NA intron (ENSMUSG00000028708.16, intron 2 of 7) protein_coding-intron (ENSMUSG00000028708.16, intron 1 of 12) 7881 ENSMUSG00000028708.16 ENSMUSG00000028708 ENSMUST00000135209 Mknk1 protein_coding Interval_72627 chr17 31144087 31145102 + 0 NA promoter-TSS (ENSMUSG00000024028.7) protein_coding-promoter-TSS (ENSMUSG00000024028.7) -312 ENSMUSG00000024028.7 ENSMUSG00000024028 ENSMUST00000024826 Tff2 protein_coding Interval_173263 chrX 75744350 75744965 + 0 NA intron (ENSMUSG00000087396.7, intron 2 of 4) processed_transcript-intron (ENSMUSG00000087396.7, intron 2 of 3) 20985 ENSMUSG00000081996.1 ENSMUSG00000081996 ENSMUST00000117092 Gm7153 processed_pseudogene Interval_91245 chr2 36317022 36317198 + 0 NA Intergenic Intergenic -6214 ENSMUSG00000082583.2 ENSMUSG00000082583 ENSMUST00000120897 Olfr336-ps1 unprocessed_pseudogene Interval_160823 chr8 112832388 112833155 + 0 NA intron (ENSMUSG00000031772.17, intron 15 of 20) protein_coding-intron (ENSMUSG00000031772.17, intron 15 of 23) 59117 ENSMUSG00000031772.17 ENSMUSG00000031772 ENSMUST00000140753 Cntnap4 protein_coding Interval_35546 chr12 24667715 24668407 + 0 NA TTS (ENSMUSG00000062563.15) protein_coding-TTS (ENSMUSG00000062563.15) 13734 ENSMUSG00000062563.15 ENSMUSG00000062563 ENSMUST00000172771 Cys1 protein_coding Interval_31567 chr11 101416443 101417730 + 0 NA exon (ENSMUSG00000075528.13, exon 2 of 2) protein_coding-exon (ENSMUSG00000075528.13, exon 2 of 2) 2167 ENSMUSG00000098600.1 ENSMUSG00000098600 ENSMUST00000185077 Mir6929 miRNA Interval_28525 chr11 76506951 76507306 + 0 NA intron (ENSMUSG00000017631.19, intron 2 of 22) protein_coding-intron (ENSMUSG00000017631.19, intron 2 of 22) -6941 ENSMUSG00000080763.2 ENSMUSG00000080763 ENSMUST00000119724 Gm12341 processed_pseudogene Interval_140438 chr6 118087864 118088860 + 0 NA intron (ENSMUSG00000030134.11, intron 10 of 12) protein_coding-intron (ENSMUSG00000030134.11, intron 10 of 12) 3170 ENSMUSG00000098583.1 ENSMUSG00000098583 ENSMUST00000184597 Mir7044 miRNA Interval_107386 chr3 107159476 107160495 + 0 NA Intergenic Intergenic -23159 ENSMUSG00000042861.7 ENSMUSG00000042861 ENSMUST00000169751 Kcna10 protein_coding Interval_11488 chr1 182157661 182157968 + 0 NA exon (ENSMUSG00000091013.3, exon 1 of 1) protein_coding-exon (ENSMUSG00000091013.3, exon 1 of 1) 6672 ENSMUSG00000091013.3 ENSMUSG00000091013 ENSMUST00000169123 Vmn1r1 protein_coding Interval_63891 chr16 4292950 4293739 + 0 NA intron (ENSMUSG00000005580.11, intron 11 of 11) protein_coding-intron (ENSMUSG00000005580.11, intron 9 of 9) 27336 ENSMUSG00000084304.1 ENSMUSG00000084304 ENSMUST00000120290 Gm6142 processed_pseudogene Interval_171736 chr9 120593218 120594274 + 0 NA Intergenic Intergenic 13611 ENSMUSG00000110962.1 ENSMUSG00000110962 ENSMUST00000213466 Gm47062 unprocessed_pseudogene Interval_110978 chr4 10995636 10996722 + 0 NA intron (ENSMUSG00000049969.3, intron 1 of 1) protein_coding-intron (ENSMUSG00000049969.3, intron 1 of 1) 11748 ENSMUSG00000049969.3 ENSMUSG00000049969 ENSMUST00000137891 Plekhf2 protein_coding Interval_126924 chr5 97222665 97222996 + 0 NA Intergenic Intergenic 27244 ENSMUSG00000105850.1 ENSMUSG00000105850 ENSMUST00000199885 Gm2861 lincRNA Interval_136689 chr6 57785762 57786234 + 0 NA intron (ENSMUSG00000037788.14, intron 1 of 2) protein_coding-intron (ENSMUSG00000037788.14, intron 2 of 4) 39152 ENSMUSG00000037788.14 ENSMUSG00000037788 ENSMUST00000143953 Vopp1 protein_coding Interval_87647 chr19 53981795 53982321 + 0 NA intron (ENSMUSG00000117981.1, intron 3 of 4) protein_coding-intron (ENSMUSG00000024976.14, intron 1 of 8) -6115 ENSMUSG00000024976.14 ENSMUSG00000024976 ENSMUST00000237801 Shoc2 protein_coding Interval_1391 chr1 21259960 21260540 + 0 NA intron (ENSMUSG00000025934.15, intron 6 of 7) protein_coding-intron (ENSMUSG00000025934.15, intron 5 of 6) 6729 ENSMUSG00000025934.15 ENSMUSG00000025934 ENSMUST00000190711 Gsta3 protein_coding Interval_76143 chr17 75534375 75535534 + 0 NA Intergenic Intergenic 16919 ENSMUSG00000002017.10 ENSMUSG00000002017 ENSMUST00000141969 Fam98a protein_coding Interval_138378 chr6 87742836 87743426 + 0 NA intron (ENSMUSG00000068263.11, intron 1 of 2) protein_coding-intron (ENSMUSG00000068263.11, intron 2 of 7) -11983 ENSMUSG00000108079.1 ENSMUSG00000108079 ENSMUST00000205253 Gm44210 antisense Interval_173025 chrX 65023865 65024224 + 0 NA Intergenic Intergenic -23600 ENSMUSG00000031181.2 ENSMUSG00000031181 ENSMUST00000033524 Ctag2 protein_coding Interval_155399 chr8 33253204 33254159 + 0 NA intron (ENSMUSG00000031583.13, intron 24 of 27) protein_coding-intron (ENSMUSG00000031583.13, intron 30 of 33) -61385 ENSMUSG00000083557.1 ENSMUSG00000083557 ENSMUST00000119347 Gm6877 processed_pseudogene Interval_46298 chr13 63522872 63523145 + 0 NA exon (ENSMUSG00000021466.12, exon 18 of 23) protein_coding-exon (ENSMUSG00000021466.12, exon 18 of 23) 16670 ENSMUSG00000021466.12 ENSMUSG00000021466 ENSMUST00000220588 Ptch1 protein_coding Interval_86395 chr19 40225222 40225929 + 0 NA intron (ENSMUSG00000055044.12, intron 1 of 2) protein_coding-intron (ENSMUSG00000055044.12, intron 5 of 6) 5230 ENSMUSG00000055044.12 ENSMUSG00000055044 ENSMUST00000182636 Pdlim1 protein_coding Interval_174154 chrX 136761199 136761902 + 0 NA intron (ENSMUSG00000087368.7, intron 7 of 9) protein_coding-intron (ENSMUSG00000018595.6, intron 8 of 8) 18591 ENSMUSG00000018595.6 ENSMUSG00000018595 ENSMUST00000154833 Glra4 protein_coding Interval_3242 chr1 55102499 55103579 + 0 NA Intergenic Intergenic 14725 ENSMUSG00000073676.4 ENSMUSG00000073676 ENSMUST00000134628 Hspe1 protein_coding Interval_46251 chr13 63032842 63033557 + 0 NA intron (ENSMUSG00000021458.17, intron 2 of 15) protein_coding-intron (ENSMUSG00000021458.17, intron 2 of 15) 23240 ENSMUSG00000113708.1 ENSMUSG00000113708 ENSMUST00000220958 Gm47584 TEC Interval_78863 chr18 21033345 21033659 + 0 NA Intergenic Intergenic 31407 ENSMUSG00000024317.15 ENSMUSG00000024317 ENSMUST00000234169 Rnf138 protein_coding Interval_69166 chr16 91081610 91082059 + 0 NA intron (ENSMUSG00000039851.11, intron 1 of 1) protein_coding-intron (ENSMUSG00000039851.11, intron 1 of 1) 13288 ENSMUSG00000039851.11 ENSMUSG00000039851 ENSMUST00000146047 4932438H23Rik protein_coding Interval_166959 chr9 64151057 64151421 + 0 NA promoter-TSS (ENSMUSG00000032400.18) protein_coding-promoter-TSS (ENSMUSG00000032400.18) 21674 ENSMUSG00000032400.18 ENSMUSG00000032400 ENSMUST00000151428 Zwilch protein_coding Interval_90144 chr2 28517298 28518525 + 0 NA intron (ENSMUSG00000026821.16, intron 1 of 3) protein_coding-intron (ENSMUSG00000026821.16, intron 1 of 17) -9939 ENSMUSG00000026821.16 ENSMUSG00000026821 ENSMUST00000140704 Ralgds protein_coding Interval_50934 chr14 20849129 20849485 + 0 NA Intergenic Intergenic 7114 ENSMUSG00000114728.1 ENSMUSG00000114728 ENSMUST00000225216 Gm6128 processed_pseudogene Interval_101849 chr3 10009069 10009823 + 0 NA Intergenic Intergenic -3159 ENSMUSG00000027533.10 ENSMUSG00000027533 ENSMUST00000123744 Fabp5 protein_coding Interval_20481 chr10 117852787 117853039 + 0 NA Intergenic Intergenic -11757 ENSMUSG00000112458.1 ENSMUSG00000112458 ENSMUST00000218113 Gm40773 lincRNA Interval_8208 chr1 136518956 136519162 + 0 NA intron (ENSMUSG00000041498.13, intron 23 of 27) protein_coding-intron (ENSMUSG00000041498.13, intron 25 of 29) -4825 ENSMUSG00000101413.1 ENSMUSG00000101413 ENSMUST00000190220 Gm29485 processed_pseudogene Interval_92901 chr2 68321215 68321454 + 0 NA intron (ENSMUSG00000027030.15, intron 3 of 10) protein_coding-intron (ENSMUSG00000027030.15, intron 10 of 17) 65347 ENSMUSG00000027030.15 ENSMUSG00000027030 ENSMUST00000149581 Stk39 protein_coding Interval_1947 chr1 34849792 34851763 + 0 NA intron (ENSMUSG00000026123.11, intron 1 of 6) protein_coding-intron (ENSMUSG00000026123.11, intron 1 of 7) -7743 ENSMUSG00000037503.12 ENSMUSG00000037503 ENSMUST00000140534 Fam168b protein_coding Interval_38464 chr12 79218198 79218873 + 0 NA intron (ENSMUSG00000021123.12, intron 4 of 5) protein_coding-intron (ENSMUSG00000021123.12, intron 5 of 6) 9588 ENSMUSG00000021123.12 ENSMUSG00000021123 ENSMUST00000140823 Rdh12 protein_coding Interval_64866 chr16 16789224 16789724 + 0 NA intron (ENSMUSG00000022783.11, intron 2 of 7) protein_coding-intron (ENSMUSG00000022783.11, intron 3 of 10) 30649 ENSMUSG00000116648.1 ENSMUSG00000116648 ENSMUST00000231756 Rpl31-ps12 processed_pseudogene Interval_7696 chr1 133105796 133106247 + 0 NA exon (ENSMUSG00000026447.17, exon 33 of 33) protein_coding-exon (ENSMUSG00000026447.17, exon 33 of 33) -25323 ENSMUSG00000046062.5 ENSMUSG00000046062 ENSMUST00000122956 Ppp1r15b protein_coding Interval_20282 chr10 116645268 116646534 + 0 NA Intergenic Intergenic 6609 ENSMUSG00000112436.1 ENSMUSG00000112436 ENSMUST00000218860 Gm48403 processed_pseudogene Interval_60543 chr15 74760348 74761444 + 0 NA Intergenic Intergenic 2724 ENSMUSG00000034634.7 ENSMUSG00000034634 ENSMUST00000040404 Ly6d protein_coding Interval_37307 chr12 65039077 65039449 + 0 NA intron (ENSMUSG00000035597.19, intron 1 of 14) protein_coding-intron (ENSMUSG00000035597.19, intron 1 of 13) -4027 ENSMUSG00000035597.19 ENSMUSG00000035597 ENSMUST00000220729 Prpf39 protein_coding Interval_154150 chr8 13067558 13068319 + 0 NA TTS (ENSMUSG00000031445.5) protein_coding-TTS (ENSMUSG00000031445.5) 6995 ENSMUSG00000031445.5 ENSMUSG00000031445 ENSMUST00000033822 Proz protein_coding Interval_112736 chr4 44507966 44508628 + 0 NA Intergenic Intergenic -95702 ENSMUSG00000077587.1 ENSMUSG00000077587 ENSMUST00000104399 Gm24376 snoRNA Interval_109377 chr3 140909993 140910177 + 0 NA intron (ENSMUSG00000118659.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000118659.1, intron 1 of 1) -1618 ENSMUSG00000104544.4 ENSMUSG00000104544 ENSMUST00000199504 Gm32754 lincRNA Interval_159632 chr8 95871948 95872498 + 0 NA exon (ENSMUSG00000031672.8, exon 5 of 10) protein_coding-exon (ENSMUSG00000031672.8, exon 5 of 10) 1409 ENSMUSG00000110711.1 ENSMUSG00000110711 ENSMUST00000212190 Gm45760 TEC Interval_46435 chr13 65240122 65242024 + 0 NA promoter-TSS (ENSMUSG00000110393.2) lincRNA-promoter-TSS (ENSMUSG00000110393.2) -1062 ENSMUSG00000110393.2 ENSMUSG00000110393 ENSMUST00000211729 Gm36445 lincRNA Interval_39759 chr12 97561958 97562166 + 0 NA Intergenic Intergenic 3006 ENSMUSG00000112590.1 ENSMUSG00000112590 ENSMUST00000218781 Gm5186 processed_pseudogene Interval_129145 chr5 117815059 117815364 + 0 NA intron (ENSMUSG00000029361.18, intron 1 of 3) protein_coding-intron (ENSMUSG00000029361.18, intron 1 of 3) -51908 ENSMUSG00000029361.18 ENSMUSG00000029361 ENSMUST00000138554 Nos1 protein_coding Interval_12321 chr1 191698328 191698653 + 0 NA Intergenic Intergenic -19537 ENSMUSG00000026623.16 ENSMUSG00000026623 ENSMUST00000130876 Lpgat1 protein_coding Interval_166361 chr9 58618206 58619295 + 0 NA exon (ENSMUSG00000032336.17, exon 2 of 8) protein_coding-exon (ENSMUSG00000032336.17, exon 2 of 8) 36376 ENSMUSG00000032336.17 ENSMUSG00000032336 ENSMUST00000177020 Nptn protein_coding Interval_84690 chr19 15307806 15308722 + 0 NA Intergenic Intergenic -347498 ENSMUSG00000063586.1 ENSMUSG00000063586 ENSMUST00000072982 Gm5513 processed_pseudogene Interval_62588 chr15 95029002 95029294 + 0 NA intron (ENSMUSG00000063296.5, intron 6 of 7) protein_coding-intron (ENSMUSG00000063296.5, intron 6 of 7) -42010 ENSMUSG00000077447.1 ENSMUSG00000077447 ENSMUST00000104259 Gm23129 snoRNA Interval_46807 chr13 70903774 70904044 + 0 NA Intergenic Intergenic 20961 ENSMUSG00000021600.5 ENSMUSG00000021600 ENSMUST00000225672 8030423J24Rik lincRNA Interval_172214 chrX 9662422 9663275 + 0 NA intron (ENSMUSG00000031176.8, intron 1 of 3) protein_coding-intron (ENSMUSG00000031176.8, intron 1 of 4) 155 ENSMUSG00000031176.8 ENSMUSG00000031176 ENSMUST00000140019 Dynlt3 protein_coding Interval_9724 chr1 161286650 161288985 + 0 NA Intergenic Intergenic 11197 ENSMUSG00000104163.1 ENSMUSG00000104163 ENSMUST00000194329 Gm19057 processed_pseudogene Interval_120177 chr4 143198326 143198676 + 0 NA intron (ENSMUSG00000057637.13, intron 1 of 3) protein_coding-intron (ENSMUSG00000057637.13, intron 1 of 9) -5564 ENSMUSG00000087903.1 ENSMUSG00000087903 ENSMUST00000157278 Gm22039 snoRNA Interval_121622 chr5 4008166 4009212 + 0 NA intron (ENSMUSG00000040407.18, intron 20 of 47) protein_coding-intron (ENSMUSG00000040407.18, intron 20 of 47) -14726 ENSMUSG00000040407.18 ENSMUSG00000040407 ENSMUST00000196837 Akap9 protein_coding Interval_100535 chr2 169999520 170000036 + 0 NA intron (ENSMUSG00000047907.11, intron 1 of 1) protein_coding-intron (ENSMUSG00000047907.11, intron 1 of 1) -36591 ENSMUSG00000103935.1 ENSMUSG00000103935 ENSMUST00000194482 AY702102 TEC Interval_95503 chr2 110435071 110436710 + 0 NA Intergenic Intergenic -16271 ENSMUSG00000083320.1 ENSMUSG00000083320 ENSMUST00000121859 Gm13935 processed_pseudogene Interval_5412 chr1 88605382 88606387 + 0 NA Intergenic Intergenic -47201 ENSMUSG00000104057.1 ENSMUSG00000104057 ENSMUST00000194311 Gm38130 TEC Interval_119212 chr4 136235937 136236607 + 0 NA intron (ENSMUSG00000036995.7, intron 10 of 24) protein_coding-intron (ENSMUSG00000036995.7, intron 10 of 24) -11701 ENSMUSG00000001604.14 ENSMUSG00000001604 ENSMUST00000143942 Tcea3 protein_coding Interval_162113 chr8 125253375 125255078 + 0 NA intron (ENSMUSG00000043051.17, intron 11 of 11) protein_coding-intron (ENSMUSG00000043051.17, intron 12 of 12) -26903 ENSMUSG00000086694.1 ENSMUSG00000086694 ENSMUST00000156666 Gm16237 antisense Interval_126016 chr5 76856134 76858934 + 0 NA exon (ENSMUSG00000036377.19, exon 6 of 9) protein_coding-exon (ENSMUSG00000036377.19, exon 6 of 9) 37544 ENSMUSG00000055923.16 ENSMUSG00000055923 ENSMUST00000134805 Aasdh protein_coding Interval_86061 chr19 36123607 36125189 + 0 NA Intergenic Intergenic -4488 ENSMUSG00000024803.9 ENSMUSG00000024803 ENSMUST00000235221 Ankrd1 protein_coding Interval_115775 chr4 103838306 103838891 + 0 NA intron (ENSMUSG00000028519.16, intron 1 of 3) protein_coding-intron (ENSMUSG00000028519.16, intron 1 of 9) 100943 ENSMUSG00000080913.1 ENSMUSG00000080913 ENSMUST00000118859 Gm12719 processed_pseudogene Interval_161726 chr8 122369629 122370282 + 0 NA intron (ENSMUSG00000092329.1, intron 1 of 15) protein_coding-intron (ENSMUSG00000092329.1, intron 1 of 15) -4082 ENSMUSG00000093682.1 ENSMUSG00000093682 ENSMUST00000176061 Gm20681 lincRNA Interval_1468 chr1 23842029 23842951 + 0 NA intron (ENSMUSG00000026156.8, intron 2 of 3) protein_coding-intron (ENSMUSG00000026156.8, intron 2 of 3) 67246 ENSMUSG00000026155.13 ENSMUSG00000026155 ENSMUST00000133398 Smap1 protein_coding Interval_79606 chr18 33975276 33975577 + 0 NA intron (ENSMUSG00000024376.7, intron 2 of 2) protein_coding-intron (ENSMUSG00000024376.7, intron 2 of 23) 31540 ENSMUSG00000024376.7 ENSMUSG00000024376 ENSMUST00000237971 Epb41l4a protein_coding Interval_21130 chr10 126770923 126771173 + 0 NA Intergenic Intergenic 22662 ENSMUSG00000112832.1 ENSMUSG00000112832 ENSMUST00000218870 4930484H19Rik lincRNA Interval_98912 chr2 155969973 155970201 + 0 NA exon (ENSMUSG00000038241.16, exon 11 of 33) protein_coding-exon (ENSMUSG00000038241.16, exon 11 of 33) -15796 ENSMUSG00000038241.16 ENSMUSG00000038241 ENSMUST00000128683 Cep250 protein_coding Interval_24265 chr11 31948546 31950620 + 0 NA Intergenic Intergenic -16009 ENSMUSG00000020299.6 ENSMUSG00000020299 ENSMUST00000102829 4930524B15Rik protein_coding Interval_75363 chr17 66136729 66137023 + 0 NA intron (ENSMUSG00000035842.10, intron 9 of 25) protein_coding-intron (ENSMUSG00000035842.10, intron 9 of 26) -6833 ENSMUSG00000035842.10 ENSMUSG00000035842 ENSMUST00000226095 Ddx11 protein_coding Interval_143856 chr7 16773004 16773212 + 0 NA Intergenic Intergenic -9290 ENSMUSG00000001918.17 ENSMUSG00000001918 ENSMUST00000141349 Slc1a5 protein_coding Interval_32991 chr11 113556074 113557116 + 0 NA intron (ENSMUSG00000041654.15, intron 3 of 4) protein_coding-intron (ENSMUSG00000041654.15, intron 3 of 10) 9184 ENSMUSG00000041654.15 ENSMUSG00000041654 ENSMUST00000123153 Slc39a11 protein_coding Interval_53593 chr14 59648513 59649817 + 0 NA intron (ENSMUSG00000021983.16, intron 35 of 35) protein_coding-intron (ENSMUSG00000021983.16, intron 35 of 35) 6617 ENSMUSG00000114593.1 ENSMUSG00000114593 ENSMUST00000224256 Gm19716 transcribed_processed_pseudogene Interval_57165 chr15 7107512 7108899 + 0 NA intron (ENSMUSG00000054263.12, intron 1 of 4) protein_coding-intron (ENSMUSG00000054263.12, intron 1 of 4) 17591 ENSMUSG00000054263.12 ENSMUSG00000054263 ENSMUST00000171588 Lifr protein_coding Interval_38359 chr12 77781004 77781717 + 0 NA Intergenic Intergenic 33449 ENSMUSG00000077707.1 ENSMUSG00000077707 ENSMUST00000104519 Gm24070 snoRNA Interval_50501 chr14 14225548 14225808 + 0 NA Intergenic Intergenic 28372 ENSMUSG00000114909.1 ENSMUSG00000114909 ENSMUST00000225081 Csnk2a1-ps1 processed_pseudogene Interval_139473 chr6 100408016 100409318 + 0 NA Intergenic Intergenic 86147 ENSMUSG00000087929.1 ENSMUSG00000087929 ENSMUST00000157304 Gm23234 snoRNA Interval_169975 chr9 103369065 103369801 + 0 NA Intergenic Intergenic -4454 ENSMUSG00000032803.15 ENSMUSG00000032803 ENSMUST00000190127 Cdv3 protein_coding Interval_54413 chr14 69052763 69053105 + 0 NA Intergenic Intergenic -23282 ENSMUSG00000114833.1 ENSMUSG00000114833 ENSMUST00000224911 Gm41192 antisense Interval_77464 chr17 89169575 89169790 + 0 NA intron (ENSMUSG00000032937.5, intron 1 of 9) protein_coding-intron (ENSMUSG00000032937.5, intron 1 of 9) 30993 ENSMUSG00000032937.5 ENSMUSG00000032937 ENSMUST00000035701 Fshr protein_coding Interval_121122 chr4 153241879 153242649 + 0 NA Intergenic Intergenic 24088 ENSMUSG00000087454.1 ENSMUSG00000087454 ENSMUST00000126141 Gm13174 lincRNA Interval_37014 chr12 56404537 56405280 + 0 NA Intergenic Intergenic 5649 ENSMUSG00000112626.1 ENSMUSG00000112626 ENSMUST00000218947 Gm18027 processed_pseudogene Interval_174728 chrX 164221773 164222250 + 0 NA intron (ENSMUSG00000031377.11, intron 9 of 18) protein_coding-intron (ENSMUSG00000031377.11, intron 9 of 18) 36182 ENSMUSG00000031377.11 ENSMUSG00000031377 ENSMUST00000112263 Bmx protein_coding Interval_71761 chr17 25919272 25920648 + 0 NA promoter-TSS (ENSMUSG00000025730.14) protein_coding-promoter-TSS (ENSMUSG00000025730.14) -318 ENSMUSG00000025730.14 ENSMUSG00000025730 ENSMUST00000164738 Rab40c protein_coding Interval_104576 chr3 68467930 68469588 + 0 NA intron (ENSMUSG00000027777.15, intron 1 of 7) protein_coding-intron (ENSMUSG00000027777.15, intron 1 of 7) -24732 ENSMUSG00000027777.15 ENSMUSG00000027777 ENSMUST00000182360 Schip1 protein_coding Interval_55366 chr14 85372323 85372569 + 0 NA Intergenic Intergenic -106580 ENSMUSG00000115239.1 ENSMUSG00000115239 ENSMUST00000227214 Gm9264 processed_pseudogene Interval_160241 chr8 107396984 107398067 + 0 NA intron (ENSMUSG00000003849.8, intron 1 of 5) protein_coding-intron (ENSMUSG00000003849.8, intron 1 of 5) 5681 ENSMUSG00000003849.8 ENSMUSG00000003849 ENSMUST00000003947 Nqo1 protein_coding Interval_107289 chr3 105474176 105474398 + 0 NA intron (ENSMUSG00000040896.16, intron 2 of 4) protein_coding-intron (ENSMUSG00000040896.16, intron 1 of 6) -22560 ENSMUSG00000074346.6 ENSMUSG00000074346 ENSMUST00000130683 Kcnd3os antisense Interval_23176 chr11 20348323 20348962 + 0 NA Intergenic Intergenic -12629 ENSMUSG00000078965.5 ENSMUSG00000078965 ENSMUST00000180654 Gm12033 processed_pseudogene Interval_152093 chr7 129137968 129138835 + 0 NA Intergenic Intergenic -83325 ENSMUSG00000108785.1 ENSMUSG00000108785 ENSMUST00000206489 Gm4259 processed_pseudogene Interval_4101 chr1 68236177 68236441 + 0 NA intron (ENSMUSG00000062209.15, intron 19 of 26) protein_coding-intron (ENSMUSG00000062209.15, intron 19 of 27) 57417 ENSMUSG00000083795.1 ENSMUSG00000083795 ENSMUST00000117740 Gm15670 processed_pseudogene Interval_163839 chr9 27064127 27064865 + 0 NA intron (ENSMUSG00000035024.16, intron 19 of 34) protein_coding-intron (ENSMUSG00000035024.16, intron 20 of 35) -34055 ENSMUSG00000111390.1 ENSMUSG00000111390 ENSMUST00000217654 Gm48796 antisense Interval_102610 chr3 28333871 28334206 + 0 NA intron (ENSMUSG00000027692.16, intron 1 of 30) protein_coding-intron (ENSMUSG00000027692.16, intron 1 of 30) 9681 ENSMUSG00000103420.1 ENSMUSG00000103420 ENSMUST00000192154 Gm37537 TEC Interval_149206 chr7 96274652 96275223 + 0 NA intron (ENSMUSG00000048078.16, intron 1 of 32) protein_coding-intron (ENSMUSG00000048078.16, intron 1 of 32) 25513 ENSMUSG00000076143.1 ENSMUSG00000076143 ENSMUST00000102189 Mir708 miRNA Interval_59855 chr15 59822862 59824525 + 0 NA Intergenic Intergenic -28734 ENSMUSG00000115426.1 ENSMUSG00000115426 ENSMUST00000228865 Gm19510 lincRNA Interval_112629 chr4 43695199 43696253 + 0 NA exon (ENSMUSG00000050215.6, exon 2 of 2) protein_coding-exon (ENSMUSG00000050215.6, exon 2 of 2) 3040 ENSMUSG00000088947.1 ENSMUSG00000088947 ENSMUST00000158322 Gm23257 rRNA Interval_98195 chr2 149725818 149726087 + 0 NA Intergenic Intergenic -17223 ENSMUSG00000081494.1 ENSMUSG00000081494 ENSMUST00000118417 Gm14130 processed_pseudogene Interval_9898 chr1 163941917 163942336 + 0 NA intron (ENSMUSG00000026584.14, intron 7 of 13) protein_coding-intron (ENSMUSG00000026584.14, intron 7 of 13) 12336 ENSMUSG00000026584.14 ENSMUSG00000026584 ENSMUST00000162920 Scyl3 protein_coding Interval_174472 chrX 153006412 153007857 + 0 NA intron (ENSMUSG00000067215.5, intron 1 of 1) protein_coding-intron (ENSMUSG00000067215.5, intron 1 of 1) 665 ENSMUSG00000067215.5 ENSMUSG00000067215 ENSMUST00000095755 Usp51 protein_coding Interval_61937 chr15 85352073 85352623 + 0 NA intron (ENSMUSG00000016541.10, intron 1 of 11) protein_coding-intron (ENSMUSG00000016541.10, intron 1 of 11) -1094 ENSMUSG00000064764.1 ENSMUSG00000064764 ENSMUST00000082830 Gm23517 snRNA Interval_102816 chr3 31405151 31406660 + 0 NA Intergenic Intergenic 64893 ENSMUSG00000103998.1 ENSMUSG00000103998 ENSMUST00000193926 Gm38025 lincRNA Interval_159664 chr8 96327347 96327524 + 0 NA intron (ENSMUSG00000110623.1, intron 1 of 4) lincRNA-intron (ENSMUSG00000110623.1, intron 1 of 4) -8817 ENSMUSG00000077272.1 ENSMUSG00000077272 ENSMUST00000104084 Gm22780 snoRNA Interval_62738 chr15 96561096 96562076 + 0 NA Intergenic Intergenic 63684 ENSMUSG00000116160.1 ENSMUSG00000116160 ENSMUST00000229356 Gm41392 lincRNA Interval_100313 chr2 168321779 168322513 + 0 NA Intergenic Intergenic -13554 ENSMUSG00000064961.1 ENSMUSG00000064961 ENSMUST00000083027 Gm22704 snoRNA Interval_100878 chr2 173073259 173074919 + 0 NA Intergenic Intergenic -39509 ENSMUSG00000087442.1 ENSMUSG00000087442 ENSMUST00000139677 Gm14453 antisense Interval_167963 chr9 75019013 75020067 + 0 NA intron (ENSMUSG00000034858.16, intron 10 of 12) protein_coding-intron (ENSMUSG00000034858.16, intron 9 of 11) -32437 ENSMUSG00000007656.13 ENSMUSG00000007656 ENSMUST00000166549 Arpp19 protein_coding Interval_12674 chr10 4270593 4270788 + 0 NA intron (ENSMUSG00000038587.10, intron 1 of 3) protein_coding-intron (ENSMUSG00000038587.10, intron 1 of 3) -57576 ENSMUSG00000111266.1 ENSMUSG00000111266 ENSMUST00000213553 Gm30570 lincRNA Interval_57158 chr15 7071160 7071756 + 0 NA Intergenic Intergenic -19156 ENSMUSG00000054263.12 ENSMUSG00000054263 ENSMUST00000171588 Lifr protein_coding Interval_5846 chr1 92473171 92474524 + 0 NA promoter-TSS (ENSMUSG00000026260.12) protein_coding-promoter-TSS (ENSMUSG00000026260.12) -80 ENSMUSG00000026260.12 ENSMUSG00000026260 ENSMUST00000189582 Ndufa10 protein_coding Interval_34579 chr12 5386658 5387016 + 0 NA intron (ENSMUSG00000037735.7, intron 1 of 1) lincRNA-intron (ENSMUSG00000037735.7, intron 1 of 1) -24804 ENSMUSG00000037735.7 ENSMUSG00000037735 ENSMUST00000163627 2810032G03Rik lincRNA Interval_148601 chr7 83037153 83037364 + 0 NA Intergenic Intergenic 42423 ENSMUSG00000077149.1 ENSMUSG00000077149 ENSMUST00000103961 Gm22934 snoRNA Interval_163698 chr9 24496747 24497018 + 0 NA intron (ENSMUSG00000043067.15, intron 1 of 5) protein_coding-intron (ENSMUSG00000043067.15, intron 1 of 5) 6258 ENSMUSG00000043067.15 ENSMUSG00000043067 ENSMUST00000129048 Dpy19l1 protein_coding Interval_113716 chr4 57820761 57822812 + 0 NA intron (ENSMUSG00000038729.24, intron 1 of 1) protein_coding-intron (ENSMUSG00000038729.24, intron 2 of 2) 736 ENSMUSG00000038729.24 ENSMUSG00000038729 ENSMUST00000102902 Pakap protein_coding Interval_94635 chr2 92882438 92884312 + 0 NA intron (ENSMUSG00000086980.1, intron 1 of 1) processed_transcript-intron (ENSMUSG00000086980.1, intron 1 of 1) -10066 ENSMUSG00000082700.1 ENSMUSG00000082700 ENSMUST00000121350 Gm13792 processed_pseudogene Interval_64885 chr16 16994562 16995068 + 0 NA intron (ENSMUSG00000063358.17, intron 1 of 8) protein_coding-intron (ENSMUSG00000063358.17, intron 1 of 8) 11386 ENSMUSG00000087951.1 ENSMUSG00000087951 ENSMUST00000157326 Gm22558 snRNA Interval_118675 chr4 133138358 133139113 + 0 NA intron (ENSMUSG00000028868.13, intron 1 of 8) protein_coding-intron (ENSMUSG00000028868.13, intron 1 of 8) 8195 ENSMUSG00000028868.13 ENSMUSG00000028868 ENSMUST00000136637 Wasf2 protein_coding Interval_133113 chr5 149917547 149917767 + 0 NA Intergenic Intergenic 7405 ENSMUSG00000107112.1 ENSMUSG00000107112 ENSMUST00000201713 Gm36241 processed_transcript Interval_79029 chr18 24050002 24053126 + 0 NA Intergenic Intergenic 30360 ENSMUSG00000117500.1 ENSMUSG00000117500 ENSMUST00000234749 Gm18085 processed_pseudogene Interval_172501 chrX 21714694 21715162 + 0 NA promoter-TSS (ENSMUSG00000031089.7) protein_coding-promoter-TSS (ENSMUSG00000031089.7) 32 ENSMUSG00000031089.7 ENSMUSG00000031089 ENSMUST00000033414 Slc6a14 protein_coding Interval_134553 chr6 29509184 29509541 + 0 NA exon (ENSMUSG00000097137.1, exon 2 of 2) antisense-exon (ENSMUSG00000097137.1, exon 2 of 2) 1637 ENSMUSG00000097137.1 ENSMUSG00000097137 ENSMUST00000181540 Gm26627 antisense Interval_68497 chr16 78237807 78239030 + 0 NA Intergenic Intergenic -1840 ENSMUSG00000077451.1 ENSMUSG00000077451 ENSMUST00000104263 Gm25916 snoRNA Interval_19039 chr10 93997965 93998662 + 0 NA intron (ENSMUSG00000036099.16, intron 4 of 8) protein_coding-intron (ENSMUSG00000036099.16, intron 4 of 11) -29768 ENSMUSG00000111349.1 ENSMUSG00000111349 ENSMUST00000216926 Gm48191 processed_pseudogene Interval_150632 chr7 112953531 112955798 + 0 NA exon (ENSMUSG00000098132.1, exon 1 of 1) protein_coding-exon (ENSMUSG00000098132.1, exon 1 of 1) 702 ENSMUSG00000098132.1 ENSMUSG00000098132 ENSMUST00000182858 Rassf10 protein_coding Interval_37212 chr12 59847712 59848148 + 0 NA Intergenic Intergenic -127601 ENSMUSG00000112355.1 ENSMUSG00000112355 ENSMUST00000219078 Gm48285 TEC Interval_7052 chr1 123873463 123873977 + 0 NA intron (ENSMUSG00000036815.17, intron 2 of 25) protein_coding-intron (ENSMUSG00000036815.17, intron 2 of 25) -43561 ENSMUSG00000102940.1 ENSMUSG00000102940 ENSMUST00000195556 Gm37551 TEC Interval_56058 chr14 105224762 105225119 + 0 NA Intergenic Intergenic -23841 ENSMUSG00000115247.1 ENSMUSG00000115247 ENSMUST00000226852 Gm6201 processed_pseudogene Interval_172210 chrX 9334888 9335292 + 0 NA Intergenic Intergenic -6982 ENSMUSG00000083670.1 ENSMUSG00000083670 ENSMUST00000119858 Gm6829 processed_pseudogene Interval_65701 chr16 25608850 25609645 + 0 NA Intergenic Intergenic -74518 ENSMUSG00000022510.14 ENSMUSG00000022510 ENSMUST00000115306 Trp63 protein_coding Interval_1386 chr1 21231371 21232328 + 0 NA Intergenic Intergenic -2873 ENSMUSG00000102633.1 ENSMUSG00000102633 ENSMUST00000191648 Gm38224 TEC Interval_106486 chr3 96651721 96652741 + 0 NA exon (ENSMUSG00000090210.7, exon 12 of 30) protein_coding-exon (ENSMUSG00000090210.7, exon 12 of 30) -5207 ENSMUSG00000090210.7 ENSMUSG00000090210 ENSMUST00000127607 Itga10 protein_coding Interval_123364 chr5 31803368 31805599 + 0 NA intron (ENSMUSG00000052139.18, intron 6 of 6) protein_coding-intron (ENSMUSG00000052139.18, intron 6 of 13) -65563 ENSMUSG00000088514.1 ENSMUSG00000088514 ENSMUST00000157889 Gm24436 misc_RNA Interval_127781 chr5 107773832 107774155 + 0 NA intron (ENSMUSG00000011831.16, intron 6 of 7) protein_coding-intron (ENSMUSG00000011831.16, intron 16 of 17) 33714 ENSMUSG00000106288.1 ENSMUSG00000106288 ENSMUST00000198605 Gm43593 TEC Interval_111351 chr4 19584257 19585240 + 0 NA intron (ENSMUSG00000028229.11, intron 2 of 5) protein_coding-intron (ENSMUSG00000028229.11, intron 2 of 9) 9586 ENSMUSG00000028229.11 ENSMUSG00000028229 ENSMUST00000029888 Rmdn1 protein_coding Interval_140754 chr6 121072652 121073363 + 0 NA intron (ENSMUSG00000051586.17, intron 1 of 14) protein_coding-intron (ENSMUSG00000051586.17, intron 1 of 17) 8411 ENSMUSG00000097011.2 ENSMUSG00000097011 ENSMUST00000203697 Gm4651 processed_transcript Interval_10280 chr1 167928108 167928444 + 0 NA Intergenic Intergenic -75863 ENSMUSG00000093538.2 ENSMUSG00000093538 ENSMUST00000177351 Gm20711 antisense Interval_53311 chr14 55952993 55953294 + 0 NA promoter-TSS (ENSMUSG00000115592.1) transcribed_unprocessed_pseudogene-promoter-TSS (ENSMUSG00000115592.1) -793 ENSMUSG00000115592.1 ENSMUSG00000115592 ENSMUST00000228685 Mcpt-ps1 transcribed_unprocessed_pseudogene Interval_93894 chr2 78179095 78179299 + 0 NA intron (ENSMUSG00000085431.7, intron 2 of 6) lincRNA-intron (ENSMUSG00000085431.7, intron 2 of 6) -122495 ENSMUSG00000054510.5 ENSMUSG00000054510 ENSMUST00000166653 Gm14461 lincRNA Interval_119591 chr4 138562148 138562532 + 0 NA Intergenic Intergenic 25389 ENSMUSG00000088589.1 ENSMUSG00000088589 ENSMUST00000157964 Gm22961 snRNA Interval_58688 chr15 37052900 37053645 + 0 NA Intergenic Intergenic 45689 ENSMUSG00000097259.2 ENSMUSG00000097259 ENSMUST00000227544 Gm26766 antisense Interval_103774 chr3 52633610 52633943 + 0 NA Intergenic Intergenic 20941 ENSMUSG00000070490.4 ENSMUSG00000070490 ENSMUST00000076317 Gm10293 processed_pseudogene Interval_40620 chr12 106070611 106071522 + 0 NA exon (ENSMUSG00000021115.15, exon 12 of 14) protein_coding-exon (ENSMUSG00000021115.15, exon 12 of 14) -13304 ENSMUSG00000113427.1 ENSMUSG00000113427 ENSMUST00000222979 Gm46378 lincRNA Interval_155635 chr8 35423608 35424438 + 0 NA Intergenic Intergenic -14517 ENSMUSG00000110384.1 ENSMUSG00000110384 ENSMUST00000211359 Gm45301 lincRNA Interval_5941 chr1 93373618 93374455 + 0 NA TTS (ENSMUSG00000026275.13) protein_coding-TTS (ENSMUSG00000026275.13) 10781 ENSMUSG00000064389.1 ENSMUSG00000064389 ENSMUST00000082455 Gm26446 snRNA Interval_156693 chr8 57348651 57349295 + 0 NA exon (ENSMUSG00000097910.2, exon 2 of 2) lincRNA-exon (ENSMUSG00000097910.2, exon 2 of 2) 8173 ENSMUSG00000097910.2 ENSMUSG00000097910 ENSMUST00000210633 5033428I22Rik lincRNA Interval_123515 chr5 33107091 33108623 + 0 NA intron (ENSMUSG00000011034.6, intron 1 of 14) protein_coding-intron (ENSMUSG00000011034.6, intron 1 of 14) 3638 ENSMUSG00000011034.6 ENSMUSG00000011034 ENSMUST00000011178 Slc5a1 protein_coding Interval_103447 chr3 41611261 41614884 + 0 NA intron (ENSMUSG00000025764.14, intron 10 of 10) protein_coding-intron (ENSMUSG00000025764.14, intron 10 of 10) 36178 ENSMUSG00000102436.1 ENSMUSG00000102436 ENSMUST00000193690 Gm38047 TEC Interval_101702 chr3 9027509 9028547 + 0 NA Intergenic Intergenic 19464 ENSMUSG00000103461.1 ENSMUSG00000103461 ENSMUST00000193974 Gm37616 processed_pseudogene Interval_122461 chr5 23102480 23102990 + 0 NA intron (ENSMUSG00000106379.1, intron 2 of 2) protein_coding-intron (ENSMUSG00000106379.1, intron 2 of 2) 121061 ENSMUSG00000104866.1 ENSMUSG00000104866 ENSMUST00000199085 Gm42948 antisense Interval_79101 chr18 24549702 24549990 + 0 NA Intergenic Intergenic -8756 ENSMUSG00000095437.1 ENSMUSG00000095437 ENSMUST00000116938 Gm23606 miRNA Interval_10322 chr1 169091119 169091490 + 0 NA Intergenic Intergenic -72215 ENSMUSG00000098829.1 ENSMUSG00000098829 ENSMUST00000184979 Mir6354 miRNA Interval_86958 chr19 45216233 45216563 + 0 NA Intergenic Intergenic 19414 ENSMUSG00000025216.9 ENSMUSG00000025216 ENSMUST00000099401 Lbx1 protein_coding Interval_171076 chr9 114414851 114416292 + 0 NA intron (ENSMUSG00000045594.10, intron 1 of 14) protein_coding-intron (ENSMUSG00000045594.10, intron 1 of 15) 14463 ENSMUSG00000045594.10 ENSMUSG00000045594 ENSMUST00000217583 Glb1 protein_coding Interval_124556 chr5 50523938 50524140 + 0 NA intron (ENSMUSG00000105423.4, intron 6 of 10) processed_transcript-intron (ENSMUSG00000105423.4, intron 6 of 10) 6566 ENSMUSG00000106345.1 ENSMUSG00000106345 ENSMUST00000199679 Gm42459 processed_pseudogene Interval_69301 chr16 92027698 92027979 + 0 NA Intergenic Intergenic -14839 ENSMUSG00000089293.1 ENSMUSG00000089293 ENSMUST00000158668 Gm23210 snRNA Interval_18008 chr10 81335215 81335446 + 0 NA TTS (ENSMUSG00000034872.6) protein_coding-TTS (ENSMUSG00000034872.6) 6599 ENSMUSG00000034881.8 ENSMUSG00000034881 ENSMUST00000220312 Tbxa2r protein_coding Interval_76704 chr17 83592975 83593205 + 0 NA intron (ENSMUSG00000045053.2, intron 1 of 1) protein_coding-intron (ENSMUSG00000045053.2, intron 1 of 1) 38805 ENSMUSG00000045053.2 ENSMUSG00000045053 ENSMUST00000051482 Kcng3 protein_coding Interval_83768 chr19 4497432 4498717 + 0 NA intron (ENSMUSG00000042041.7, intron 1 of 1) protein_coding-intron (ENSMUSG00000042041.7, intron 1 of 1) 509 ENSMUSG00000042041.7 ENSMUSG00000042041 ENSMUST00000048482 2010003K11Rik protein_coding Interval_123225 chr5 30755148 30755360 + 0 NA intron (ENSMUSG00000029168.14, intron 2 of 12) protein_coding-intron (ENSMUSG00000029168.14, intron 2 of 12) -3778 ENSMUSG00000106173.1 ENSMUSG00000106173 ENSMUST00000197835 Gm42764 sense_intronic Interval_70560 chr17 12030341 12031917 + 0 NA intron (ENSMUSG00000023826.16, intron 1 of 2) protein_coding-intron (ENSMUSG00000023826.16, intron 1 of 2) -88200 ENSMUSG00000023827.8 ENSMUSG00000023827 ENSMUST00000167905 Agpat4 protein_coding Interval_64013 chr16 5262963 5263964 + 0 NA intron (ENSMUSG00000087168.1, intron 1 of 1) antisense-intron (ENSMUSG00000087168.1, intron 1 of 1) -7531 ENSMUSG00000022544.14 ENSMUSG00000022544 ENSMUST00000140718 Eef2kmt protein_coding Interval_98645 chr2 153777611 153779725 + 0 NA Intergenic Intergenic -2224 ENSMUSG00000044083.12 ENSMUSG00000044083 ENSMUST00000175856 Efcab8 protein_coding Interval_33857 chr11 119037063 119037289 + 0 NA exon (ENSMUSG00000025578.9, exon 5 of 5) protein_coding-exon (ENSMUSG00000025578.9, exon 5 of 5) 3735 ENSMUSG00000025578.9 ENSMUSG00000025578 ENSMUST00000143831 Cbx8 protein_coding Interval_45939 chr13 59477081 59478269 + 0 NA intron (ENSMUSG00000021557.15, intron 17 of 22) protein_coding-intron (ENSMUSG00000021557.15, intron 17 of 22) -12387 ENSMUSG00000021557.15 ENSMUSG00000021557 ENSMUST00000163284 Agtpbp1 protein_coding Interval_154680 chr8 22544442 22545562 + 0 NA intron (ENSMUSG00000037656.9, intron 4 of 10) protein_coding-intron (ENSMUSG00000037656.9, intron 4 of 10) 38776 ENSMUSG00000037656.9 ENSMUSG00000037656 ENSMUST00000210388 Slc20a2 protein_coding Interval_133539 chr6 6233485 6233809 + 0 NA Intergenic Intergenic -15012 ENSMUSG00000093482.8 ENSMUSG00000093482 ENSMUST00000181343 Gm20619 lincRNA Interval_164075 chr9 31315886 31316107 + 0 NA exon (ENSMUSG00000042496.18, exon 1 of 5) protein_coding-exon (ENSMUSG00000042496.18, exon 1 of 5) 2443 ENSMUSG00000042496.18 ENSMUSG00000042496 ENSMUST00000074510 Prdm10 protein_coding Interval_124129 chr5 38546475 38547479 + 0 NA TTS (ENSMUSG00000064419.1) snRNA-TTS (ENSMUSG00000064419.1) 519 ENSMUSG00000064419.1 ENSMUSG00000064419 ENSMUST00000082485 Gm22249 snRNA Interval_86415 chr19 40331699 40332844 + 0 NA intron (ENSMUSG00000025006.18, intron 9 of 19) protein_coding-intron (ENSMUSG00000025006.18, intron 12 of 21) 34300 ENSMUSG00000114796.1 ENSMUSG00000114796 ENSMUST00000225358 A930028N01Rik antisense Interval_41124 chr12 111334091 111334827 + 0 NA intron (ENSMUSG00000021279.5, intron 5 of 36) protein_coding-intron (ENSMUSG00000021279.5, intron 5 of 36) -19922 ENSMUSG00000021279.5 ENSMUSG00000021279 ENSMUST00000222196 Cdc42bpb protein_coding Interval_72062 chr17 27790900 27791230 + 0 NA intron (ENSMUSG00000056692.13, intron 2 of 4) protein_coding-intron (ENSMUSG00000056692.13, intron 2 of 3) 6686 ENSMUSG00000080731.2 ENSMUSG00000080731 ENSMUST00000121414 Rps2-ps9 transcribed_processed_pseudogene Interval_107842 chr3 116073701 116073962 + 0 NA Intergenic Intergenic -7912 ENSMUSG00000077741.1 ENSMUSG00000077741 ENSMUST00000104553 Gm26344 snoRNA Interval_71077 chr17 17719112 17719323 + 0 NA intron (ENSMUSG00000092120.2, intron 3 of 5) protein_coding-intron (ENSMUSG00000092120.2, intron 3 of 5) 15470 ENSMUSG00000092120.2 ENSMUSG00000092120 ENSMUST00000232113 Vmn2r90 protein_coding Interval_55546 chr14 91477742 91479262 + 0 NA Intergenic Intergenic 169337 ENSMUSG00000115368.1 ENSMUSG00000115368 ENSMUST00000227213 Gm48942 lincRNA Interval_150213 chr7 108154524 108154841 + 0 NA Intergenic Intergenic 5189 ENSMUSG00000108995.1 ENSMUSG00000108995 ENSMUST00000208296 Olfr485 protein_coding Interval_7679 chr1 133000515 133000787 + 0 NA TTS (ENSMUSG00000054387.13) protein_coding-TTS (ENSMUSG00000054387.13) 24706 ENSMUSG00000054387.13 ENSMUSG00000054387 ENSMUST00000186645 Mdm4 protein_coding Interval_117999 chr4 127672144 127672503 + 0 NA Intergenic Intergenic 139850 ENSMUSG00000087510.1 ENSMUSG00000087510 ENSMUST00000141892 1700112K13Rik lincRNA Interval_22810 chr11 16113582 16114918 + 0 NA Intergenic Intergenic 76457 ENSMUSG00000104323.1 ENSMUSG00000104323 ENSMUST00000193500 Gm37319 TEC Interval_150044 chr7 105376980 105377811 + 0 NA promoter-TSS (ENSMUSG00000078611.3) protein_coding-promoter-TSS (ENSMUSG00000078611.3) 2357 ENSMUSG00000078611.3 ENSMUSG00000078611 ENSMUST00000209233 Gm5901 protein_coding Interval_8825 chr1 151399392 151399851 + 0 NA intron (ENSMUSG00000052748.14, intron 1 of 3) protein_coding-intron (ENSMUSG00000052748.14, intron 11 of 19) 4986 ENSMUSG00000052748.14 ENSMUSG00000052748 ENSMUST00000185247 Swt1 protein_coding Interval_82834 chr18 77281549 77282767 + 0 NA intron (ENSMUSG00000032818.16, intron 1 of 39) protein_coding-intron (ENSMUSG00000032818.16, intron 1 of 38) 200 ENSMUSG00000032818.16 ENSMUSG00000032818 ENSMUST00000123166 Loxhd1 protein_coding Interval_171798 chr9 121268452 121268645 + 0 NA intron (ENSMUSG00000040936.15, intron 2 of 36) protein_coding-intron (ENSMUSG00000040936.15, intron 2 of 33) -9228 ENSMUSG00000110863.1 ENSMUSG00000110863 ENSMUST00000215259 Gm34655 bidirectional_promoter_lncRNA Interval_46728 chr13 69674155 69674589 + 0 NA Intergenic Intergenic -5428 ENSMUSG00000114171.1 ENSMUSG00000114171 ENSMUST00000221036 Gm18313 processed_pseudogene Interval_119174 chr4 135986525 135987671 + 0 NA promoter-TSS (ENSMUSG00000028669.15) protein_coding-promoter-TSS (ENSMUSG00000028669.15) -1160 ENSMUSG00000028669.15 ENSMUSG00000028669 ENSMUST00000125394 Pithd1 protein_coding Interval_85867 chr19 32531219 32532031 + 0 NA Intergenic Intergenic -11723 ENSMUSG00000118168.1 ENSMUSG00000118168 ENSMUST00000237957 Gm36419 lincRNA Interval_173614 chrX 100987615 100987895 + 0 NA intron (ENSMUSG00000009670.11, intron 9 of 29) protein_coding-intron (ENSMUSG00000009670.11, intron 9 of 29) -18066 ENSMUSG00000089205.1 ENSMUSG00000089205 ENSMUST00000158580 Gm24577 snRNA Interval_76382 chr17 79757316 79757717 + 0 NA Intergenic Intergenic -14446 ENSMUSG00000117616.1 ENSMUSG00000117616 ENSMUST00000234208 Gm49984 lincRNA Interval_138417 chr6 88012513 88013830 + 0 NA intron (ENSMUSG00000079477.9, intron 3 of 4) protein_coding-intron (ENSMUSG00000079477.9, intron 2 of 5) -18992 ENSMUSG00000108227.1 ENSMUSG00000108227 ENSMUST00000203702 4933412L11Rik TEC Interval_67258 chr16 44893738 44894451 + 0 NA intron (ENSMUSG00000090176.1, intron 2 of 5) protein_coding-intron (ENSMUSG00000090176.1, intron 2 of 5) 1798 ENSMUSG00000116820.1 ENSMUSG00000116820 ENSMUST00000231755 Gm17928 processed_pseudogene Interval_14618 chr10 37077558 37078672 + 0 NA Intergenic Intergenic -51629 ENSMUSG00000103299.1 ENSMUSG00000103299 ENSMUST00000192030 Gm38231 TEC Interval_85321 chr19 24673972 24674300 + 0 NA exon (ENSMUSG00000048572.5, exon 1 of 2) protein_coding-exon (ENSMUSG00000048572.5, exon 1 of 2) 128 ENSMUSG00000048572.5 ENSMUSG00000048572 ENSMUST00000057243 Tmem252 protein_coding Interval_74783 chr17 56510027 56512101 + 0 NA TTS (ENSMUSG00000044526.3) protein_coding-TTS (ENSMUSG00000044526.3) 1367 ENSMUSG00000044526.3 ENSMUSG00000044526 ENSMUST00000052211 Znrf4 protein_coding Interval_17037 chr10 70738922 70740434 + 0 NA promoter-TSS (ENSMUSG00000112607.1) lincRNA-promoter-TSS (ENSMUSG00000112607.1) -834 ENSMUSG00000112607.1 ENSMUSG00000112607 ENSMUST00000219486 Gm33979 lincRNA Interval_25612 chr11 50201514 50201861 + 0 NA TTS (ENSMUSG00000015837.15) protein_coding-TTS (ENSMUSG00000015837.15) 5632 ENSMUSG00000015837.15 ENSMUSG00000015837 ENSMUST00000154805 Sqstm1 protein_coding Interval_162114 chr8 125264430 125264743 + 0 NA Intergenic Intergenic -37263 ENSMUSG00000086694.1 ENSMUSG00000086694 ENSMUST00000156666 Gm16237 antisense Interval_170173 chr9 105893885 105894343 + 0 NA intron (ENSMUSG00000091345.9, intron 29 of 40) protein_coding-intron (ENSMUSG00000091345.9, intron 29 of 39) -66029 ENSMUSG00000043719.14 ENSMUSG00000043719 ENSMUST00000060896 Col6a6 protein_coding Interval_111980 chr4 32940933 32941770 + 0 NA intron (ENSMUSG00000040183.13, intron 1 of 15) protein_coding-intron (ENSMUSG00000040183.13, intron 1 of 14) -23537 ENSMUSG00000094344.1 ENSMUSG00000094344 ENSMUST00000180255 Gm11942 processed_pseudogene Interval_137073 chr6 67168238 67169411 + 0 NA TTS (ENSMUSG00000097603.3) processed_transcript-TTS (ENSMUSG00000097603.3) -36795 ENSMUSG00000047905.10 ENSMUSG00000047905 ENSMUST00000120174 Gm8566 processed_pseudogene Interval_140401 chr6 117862013 117863669 + 0 NA promoter-TSS (ENSMUSG00000042097.17) protein_coding-promoter-TSS (ENSMUSG00000042097.17) -236 ENSMUSG00000042097.17 ENSMUSG00000042097 ENSMUST00000112857 Zfp239 protein_coding Interval_114472 chr4 80294118 80294962 + 0 NA Intergenic Intergenic -145858 ENSMUSG00000082555.1 ENSMUSG00000082555 ENSMUST00000117418 Gm11406 processed_pseudogene Interval_133747 chr6 11161534 11162000 + 0 NA Intergenic Intergenic -187389 ENSMUSG00000107948.2 ENSMUSG00000107948 ENSMUST00000205141 AA545190 lincRNA Interval_174215 chrX 139870462 139871995 + 0 NA promoter-TSS (ENSMUSG00000031434.15) protein_coding-promoter-TSS (ENSMUSG00000031434.15) -21706 ENSMUSG00000081374.1 ENSMUSG00000081374 ENSMUST00000117724 Gm15011 processed_pseudogene Interval_13536 chr10 19300141 19301095 + 0 NA intron (ENSMUSG00000110917.1, intron 3 of 4) lincRNA-intron (ENSMUSG00000110917.1, intron 3 of 4) 9629 ENSMUSG00000110917.1 ENSMUSG00000110917 ENSMUST00000213234 Gm33056 lincRNA Interval_46690 chr13 69242447 69242700 + 0 NA Intergenic Intergenic 101344 ENSMUSG00000097522.1 ENSMUSG00000097522 ENSMUST00000181690 Gm26844 lincRNA Interval_102233 chr3 19759648 19760075 + 0 NA Intergenic Intergenic -9012 ENSMUSG00000106182.1 ENSMUSG00000106182 ENSMUST00000197778 Gm7442 processed_pseudogene Interval_4980 chr1 83187081 83187413 + 0 NA intron (ENSMUSG00000053161.16, intron 5 of 9) protein_coding-intron (ENSMUSG00000053161.16, intron 5 of 12) 25637 ENSMUSG00000101896.1 ENSMUSG00000101896 ENSMUST00000178732 Gm6244 processed_pseudogene Interval_84906 chr19 18698046 18698350 + 0 NA intron (ENSMUSG00000024726.10, intron 6 of 7) protein_coding-intron (ENSMUSG00000024726.10, intron 6 of 7) -14995 ENSMUSG00000047044.7 ENSMUSG00000047044 ENSMUST00000055792 D030056L22Rik protein_coding Interval_146719 chr7 49688046 49689848 + 0 NA Intergenic Intergenic -52098 ENSMUSG00000030507.6 ENSMUSG00000030507 ENSMUST00000032717 Dbx1 protein_coding Interval_1240 chr1 17978221 17978913 + 0 NA Intergenic Intergenic -15246 ENSMUSG00000099591.1 ENSMUSG00000099591 ENSMUST00000185706 Gm17969 processed_pseudogene Interval_18074 chr10 82117205 82117901 + 0 NA Intergenic Intergenic -10460 ENSMUSG00000078435.5 ENSMUSG00000078435 ENSMUST00000105314 AU041133 protein_coding Interval_125818 chr5 74591358 74591836 + 0 NA TTS (ENSMUSG00000029228.15) protein_coding-TTS (ENSMUSG00000029228.15) 6815 ENSMUSG00000029227.15 ENSMUSG00000029227 ENSMUST00000125129 Fip1l1 protein_coding Interval_65832 chr16 29644649 29645730 + 0 NA intron (ENSMUSG00000038084.16, intron 28 of 28) protein_coding-intron (ENSMUSG00000038084.16, intron 28 of 29) 58175 ENSMUSG00000038084.16 ENSMUSG00000038084 ENSMUST00000160101 Opa1 protein_coding Interval_10847 chr1 175923548 175924495 + 0 NA Intergenic Intergenic 3692 ENSMUSG00000104158.2 ENSMUSG00000104158 ENSMUST00000194391 Gm38100 protein_coding Interval_100653 chr2 170791558 170792101 + 0 NA intron (ENSMUSG00000027560.4, intron 1 of 7) protein_coding-intron (ENSMUSG00000027560.4, intron 1 of 7) 60022 ENSMUSG00000027560.4 ENSMUSG00000027560 ENSMUST00000029075 Dok5 protein_coding Interval_166348 chr9 58494941 58495209 + 0 NA intron (ENSMUSG00000066607.5, intron 1 of 1) protein_coding-intron (ENSMUSG00000066607.5, intron 2 of 2) 6113 ENSMUSG00000066607.5 ENSMUSG00000066607 ENSMUST00000216294 Insyn1 protein_coding Interval_101826 chr3 9779495 9780376 + 0 NA intron (ENSMUSG00000089794.1, intron 1 of 1) protein_coding-intron (ENSMUSG00000027508.15, intron 1 of 7) 22328 ENSMUSG00000089794.1 ENSMUSG00000089794 ENSMUST00000160368 Gm16337 lincRNA Interval_59655 chr15 57607186 57607372 + 0 NA Intergenic Intergenic -88450 ENSMUSG00000071757.10 ENSMUSG00000071757 ENSMUST00000160990 Zhx2 protein_coding Interval_148952 chr7 90302115 90303433 + 0 NA intron (ENSMUSG00000030616.16, intron 1 of 6) protein_coding-intron (ENSMUSG00000030616.16, intron 1 of 6) 9040 ENSMUSG00000084480.1 ENSMUSG00000084480 ENSMUST00000122531 n-R5s155 rRNA Interval_1733 chr1 33215930 33216417 + 0 NA promoter-TSS (ENSMUSG00000104230.1) lincRNA-promoter-TSS (ENSMUSG00000104230.1) -698 ENSMUSG00000104230.1 ENSMUSG00000104230 ENSMUST00000193283 Gm37591 lincRNA Interval_6769 chr1 119363493 119363714 + 0 NA intron (ENSMUSG00000101179.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000101179.1, intron 1 of 2) 34403 ENSMUSG00000101179.1 ENSMUSG00000101179 ENSMUST00000186504 Gm29455 lincRNA Interval_133095 chr5 149765586 149766022 + 0 NA Intergenic Intergenic 26272 ENSMUSG00000051950.10 ENSMUSG00000051950 ENSMUST00000201088 B3glct protein_coding Interval_104443 chr3 65711283 65711620 + 0 NA intron (ENSMUSG00000074579.14, intron 3 of 12) protein_coding-intron (ENSMUSG00000074579.14, intron 3 of 6) 33065 ENSMUSG00000104037.1 ENSMUSG00000104037 ENSMUST00000193471 Gm37776 TEC Interval_114529 chr4 82303529 82304853 + 0 NA intron (ENSMUSG00000008575.17, intron 8 of 8) protein_coding-intron (ENSMUSG00000008575.17, intron 11 of 11) -135219 ENSMUSG00000084595.1 ENSMUSG00000084595 ENSMUST00000122646 n-R5s188 rRNA Interval_72764 chr17 32027520 32028119 + 0 NA promoter-TSS (ENSMUSG00000088406.1) misc_RNA-promoter-TSS (ENSMUSG00000088406.1) -119 ENSMUSG00000088406.1 ENSMUSG00000088406 ENSMUST00000157781 Gm25883 misc_RNA Interval_9141 chr1 153997398 153997687 + 0 NA Intergenic Intergenic 8675 ENSMUSG00000101903.1 ENSMUSG00000101903 ENSMUST00000186055 Gm29291 lincRNA Interval_68944 chr16 89585814 89586490 + 0 NA Intergenic Intergenic 1617 ENSMUSG00000116870.1 ENSMUSG00000116870 ENSMUST00000231309 Gm49696 lincRNA Interval_56285 chr14 116325273 116325952 + 0 NA intron (ENSMUSG00000022112.14, intron 7 of 7) protein_coding-intron (ENSMUSG00000022112.14, intron 7 of 7) -424603 ENSMUSG00000104296.1 ENSMUSG00000104296 ENSMUST00000193536 Gm38045 TEC Interval_60776 chr15 76675953 76676824 + 0 NA intron (ENSMUSG00000033819.16, intron 1 of 10) protein_coding-intron (ENSMUSG00000033819.16, intron 1 of 10) -6586 ENSMUSG00000033837.5 ENSMUSG00000033837 ENSMUST00000230207 Foxh1 protein_coding Interval_80118 chr18 37725616 37726576 + 0 NA promoter-TSS (ENSMUSG00000104512.1) antisense-promoter-TSS (ENSMUSG00000104512.1) 25 ENSMUSG00000104512.1 ENSMUSG00000104512 ENSMUST00000193815 Gm37165 antisense Interval_60063 chr15 64358632 64359440 + 0 NA intron (ENSMUSG00000022377.16, intron 1 of 30) protein_coding-intron (ENSMUSG00000022377.16, intron 1 of 30) -30019 ENSMUSG00000115646.1 ENSMUSG00000115646 ENSMUST00000228336 Gm10926 TEC Interval_94861 chr2 98106799 98107174 + 0 NA Intergenic Intergenic -157307 ENSMUSG00000082820.3 ENSMUSG00000082820 ENSMUST00000117547 Gm13803 processed_pseudogene Interval_76733 chr17 83737782 83738507 + 0 NA intron (ENSMUSG00000055817.18, intron 1 of 2) protein_coding-intron (ENSMUSG00000055817.18, intron 3 of 16) 8980 ENSMUSG00000055817.18 ENSMUSG00000055817 ENSMUST00000175920 Mta3 protein_coding Interval_155315 chr8 31186874 31188589 + 0 NA intron (ENSMUSG00000046152.16, intron 1 of 3) protein_coding-intron (ENSMUSG00000046152.16, intron 1 of 4) -13538 ENSMUSG00000046152.16 ENSMUSG00000046152 ENSMUST00000162162 Fut10 protein_coding Interval_101883 chr3 10366586 10368538 + 0 NA intron (ENSMUSG00000027536.6, intron 1 of 4) protein_coding-intron (ENSMUSG00000027536.6, intron 1 of 4) 604 ENSMUSG00000027536.6 ENSMUSG00000027536 ENSMUST00000191826 Chmp4c protein_coding Interval_157645 chr8 71986077 71986785 + 0 NA exon (ENSMUSG00000110529.1, exon 1 of 1) TEC-exon (ENSMUSG00000110529.1, exon 1 of 1) 2528 ENSMUSG00000110529.1 ENSMUSG00000110529 ENSMUST00000212022 Gm45694 TEC Interval_44002 chr13 39011499 39012463 + 0 NA Intergenic Intergenic 51362 ENSMUSG00000096932.2 ENSMUSG00000096932 ENSMUST00000181376 5033403F01Rik antisense Interval_153405 chr7 144461705 144462089 + 0 NA intron (ENSMUSG00000031078.15, intron 4 of 17) protein_coding-intron (ENSMUSG00000031078.15, intron 4 of 16) 8096 ENSMUSG00000085228.1 ENSMUSG00000085228 ENSMUST00000145297 Gm14376 sense_intronic Interval_118043 chr4 128579315 128579586 + 0 NA Intergenic Intergenic 26875 ENSMUSG00000028804.20 ENSMUSG00000028804 ENSMUST00000221199 Csmd2 protein_coding Interval_124268 chr5 43203892 43204237 + 0 NA intron (ENSMUSG00000085720.8, intron 1 of 5) antisense-intron (ENSMUSG00000085720.8, intron 1 of 7) 30921 ENSMUSG00000085720.8 ENSMUSG00000085720 ENSMUST00000140650 Gm7854 antisense Interval_112776 chr4 44920829 44921669 + 0 NA intron (ENSMUSG00000035649.17, intron 6 of 8) protein_coding-intron (ENSMUSG00000035649.17, intron 2 of 4) -22504 ENSMUSG00000084854.1 ENSMUSG00000084854 ENSMUST00000154177 Gm12678 lincRNA Interval_45125 chr13 52536137 52536371 + 0 NA Intergenic Intergenic -4975 ENSMUSG00000047842.7 ENSMUSG00000047842 ENSMUST00000057442 Diras2 protein_coding Interval_30385 chr11 94038019 94038214 + 0 NA promoter-TSS (ENSMUSG00000081604.5) processed_pseudogene-promoter-TSS (ENSMUSG00000081604.5) -488 ENSMUSG00000081604.5 ENSMUSG00000081604 ENSMUST00000118048 Gm11518 processed_pseudogene Interval_17883 chr10 80576511 80579154 + 0 NA promoter-TSS (ENSMUSG00000035397.8) protein_coding-promoter-TSS (ENSMUSG00000035397.8) -511 ENSMUSG00000035397.8 ENSMUSG00000035397 ENSMUST00000038558 Klf16 protein_coding Interval_81392 chr18 60462235 60462911 + 0 NA Intergenic Intergenic 20808 ENSMUSG00000063388.5 ENSMUSG00000063388 ENSMUST00000073997 BC023105 processed_pseudogene Interval_149092 chr7 93095132 93096794 + 0 NA intron (ENSMUSG00000097644.1, intron 3 of 3) sense_overlapping-intron (ENSMUSG00000097644.1, intron 3 of 3) -15169 ENSMUSG00000054061.8 ENSMUSG00000054061 ENSMUST00000191246 Gm9934 antisense Interval_143033 chr6 148756280 148757628 + 0 NA Intergenic Intergenic 42878 ENSMUSG00000040029.15 ENSMUSG00000040029 ENSMUST00000205196 Ipo8 protein_coding Interval_12481 chr1 194001890 194002271 + 0 NA Intergenic Intergenic 135071 ENSMUSG00000104182.1 ENSMUSG00000104182 ENSMUST00000194272 Gm21362 processed_pseudogene Interval_77473 chr17 89457127 89457338 + 0 NA Intergenic Intergenic 77991 ENSMUSG00000117524.1 ENSMUSG00000117524 ENSMUST00000234513 Gm4719 lincRNA Interval_73292 chr17 36015004 36016198 + 0 NA exon (ENSMUSG00000053835.17, exon 3 of 6) protein_coding-exon (ENSMUSG00000053835.17, exon 3 of 6) 4924 ENSMUSG00000053835.17 ENSMUSG00000053835 ENSMUST00000174063 H2-T24 protein_coding Interval_172276 chrX 12251801 12252942 + 0 NA Intergenic Intergenic -72304 ENSMUSG00000083486.1 ENSMUSG00000083486 ENSMUST00000119545 Gm14521 processed_pseudogene Interval_84430 chr19 10845851 10846304 + 0 NA intron (ENSMUSG00000024737.2, intron 1 of 5) protein_coding-intron (ENSMUSG00000024737.2, intron 1 of 7) -4315 ENSMUSG00000118027.1 ENSMUSG00000118027 ENSMUST00000235514 Gm10802 antisense Interval_123826 chr5 35778612 35778833 + 0 NA intron (ENSMUSG00000029095.17, intron 1 of 21) protein_coding-intron (ENSMUSG00000029095.17, intron 1 of 19) -38735 ENSMUSG00000036553.16 ENSMUSG00000036553 ENSMUST00000154118 Sh3tc1 protein_coding Interval_76919 chr17 84982546 84983138 + 0 NA intron (ENSMUSG00000061130.13, intron 2 of 7) protein_coding-intron (ENSMUSG00000061130.13, intron 1 of 5) -10838 ENSMUSG00000061130.13 ENSMUSG00000061130 ENSMUST00000234851 Ppm1b protein_coding Interval_82265 chr18 69763810 69764340 + 0 NA Intergenic Intergenic 13970 ENSMUSG00000064706.1 ENSMUSG00000064706 ENSMUST00000082772 Gm22508 misc_RNA Interval_132218 chr5 143403412 143404603 + 0 NA promoter-TSS (ENSMUSG00000093720.1) antisense-promoter-TSS (ENSMUSG00000093720.1) 169 ENSMUSG00000079111.3 ENSMUSG00000079111 ENSMUST00000110731 Kdelr2 protein_coding Interval_61532 chr15 82205899 82208066 + 0 NA TTS (ENSMUSG00000096883.2) protein_coding-TTS (ENSMUSG00000096883.2) 2958 ENSMUSG00000096883.2 ENSMUSG00000096883 ENSMUST00000229543 Shisa8 protein_coding Interval_83495 chr18 87552569 87552826 + 0 NA Intergenic Intergenic -23511 ENSMUSG00000117683.1 ENSMUSG00000117683 ENSMUST00000237348 Gm50389 processed_pseudogene Interval_111897 chr4 32337706 32338311 + 0 NA intron (ENSMUSG00000040270.16, intron 2 of 3) protein_coding-intron (ENSMUSG00000040270.16, intron 2 of 7) -79427 ENSMUSG00000040270.16 ENSMUSG00000040270 ENSMUST00000125263 Bach2 protein_coding Interval_137884 chr6 83136795 83138320 + 0 NA exon (ENSMUSG00000034930.16, exon 1 of 12) protein_coding-exon (ENSMUSG00000034930.16, exon 1 of 12) -12689 ENSMUSG00000030034.12 ENSMUSG00000030034 ENSMUST00000203085 Ino80b protein_coding Interval_2512 chr1 39895146 39895910 + 0 NA Intergenic Intergenic -5651 ENSMUSG00000026074.15 ENSMUSG00000026074 ENSMUST00000191657 Map4k4 protein_coding Interval_62879 chr15 97672257 97672700 + 0 NA Intergenic Intergenic 7875 ENSMUSG00000022466.6 ENSMUSG00000022466 ENSMUST00000229008 Rpap3 protein_coding Interval_131927 chr5 140836211 140836428 + 0 NA Intergenic Intergenic -6162 ENSMUSG00000000149.10 ENSMUSG00000000149 ENSMUST00000198447 Gna12 protein_coding Interval_102041 chr3 16043291 16043708 + 0 NA Intergenic Intergenic 29681 ENSMUSG00000094598.1 ENSMUSG00000094598 ENSMUST00000180054 Gm24694 miRNA Interval_165147 chr9 44836239 44836981 + 0 NA exon (ENSMUSG00000002028.13, exon 11 of 36) protein_coding-exon (ENSMUSG00000002028.13, exon 11 of 36) 22565 ENSMUSG00000111017.1 ENSMUSG00000111017 ENSMUST00000213541 Gm48314 TEC Interval_158671 chr8 85061978 85062276 + 0 NA promoter-TSS (ENSMUSG00000099076.1) miRNA-promoter-TSS (ENSMUSG00000099076.1) 41 ENSMUSG00000099076.1 ENSMUSG00000099076 ENSMUST00000183657 Mir7070 miRNA Interval_148631 chr7 83605283 83605718 + 0 NA intron (ENSMUSG00000038540.14, intron 11 of 21) protein_coding-intron (ENSMUSG00000038540.14, intron 11 of 22) 7973 ENSMUSG00000038540.14 ENSMUSG00000038540 ENSMUST00000171397 Tmc3 protein_coding Interval_131045 chr5 134742269 134742824 + 0 NA intron (ENSMUSG00000029675.12, intron 1 of 23) protein_coding-intron (ENSMUSG00000029675.12, intron 1 of 36) -4496 ENSMUSG00000107318.1 ENSMUSG00000107318 ENSMUST00000200700 Gm30003 antisense Interval_95542 chr2 112053508 112053943 + 0 NA Intergenic Intergenic -3487 ENSMUSG00000074947.3 ENSMUSG00000074947 ENSMUST00000099600 Olfr1312 protein_coding Interval_120817 chr4 150798915 150800662 + 0 NA Intergenic Intergenic -25945 ENSMUSG00000085097.1 ENSMUSG00000085097 ENSMUST00000133196 Gm13049 lincRNA Interval_169854 chr9 102511312 102511931 + 0 NA intron (ENSMUSG00000035606.8, intron 2 of 10) protein_coding-intron (ENSMUSG00000035606.8, intron 2 of 10) -9715 ENSMUSG00000035606.8 ENSMUSG00000035606 ENSMUST00000190609 Ky protein_coding Interval_114941 chr4 87401515 87402486 + 0 NA Intergenic Intergenic -30272 ENSMUSG00000093065.1 ENSMUSG00000093065 ENSMUST00000175324 Gm23154 miRNA Interval_28154 chr11 73281207 73282201 + 0 NA exon (ENSMUSG00000043029.2, exon 7 of 18) protein_coding-exon (ENSMUSG00000043029.2, exon 7 of 18) 14316 ENSMUSG00000043029.2 ENSMUSG00000043029 ENSMUST00000049676 Trpv3 protein_coding Interval_142906 chr6 146824619 146825683 + 0 NA intron (ENSMUSG00000040187.15, intron 10 of 14) protein_coding-intron (ENSMUSG00000040187.15, intron 10 of 14) -5373 ENSMUSG00000040187.15 ENSMUSG00000040187 ENSMUST00000204578 Arntl2 protein_coding Interval_76959 chr17 85162304 85163514 + 0 NA intron (ENSMUSG00000071037.6, intron 5 of 5) protein_coding-intron (ENSMUSG00000071037.6, intron 3 of 10) 72303 ENSMUSG00000071037.6 ENSMUSG00000071037 ENSMUST00000234501 Camkmt protein_coding Interval_21417 chr10 128489528 128490479 + 0 NA TTS (ENSMUSG00000025369.15) protein_coding-TTS (ENSMUSG00000025369.15) 3826 ENSMUSG00000090841.2 ENSMUSG00000090841 ENSMUST00000217913 Myl6 protein_coding Interval_41883 chr13 3876841 3877379 + 0 NA Intergenic Intergenic 22842 ENSMUSG00000099269.3 ENSMUSG00000099269 ENSMUST00000184271 Calm5 protein_coding Interval_100187 chr2 167540048 167541050 + 0 NA intron (ENSMUSG00000042821.7, intron 2 of 2) protein_coding-intron (ENSMUSG00000042821.7, intron 2 of 2) 2354 ENSMUSG00000042821.7 ENSMUSG00000042821 ENSMUST00000052631 Snai1 protein_coding Interval_138776 chr6 91762201 91762557 + 0 NA exon (ENSMUSG00000030098.15, exon 24 of 24) protein_coding-exon (ENSMUSG00000030098.15, exon 24 of 24) 12195 ENSMUSG00000030096.8 ENSMUSG00000030096 ENSMUST00000206988 Slc6a6 protein_coding Interval_65773 chr16 28593181 28593519 + 0 NA intron (ENSMUSG00000022523.10, intron 1 of 4) protein_coding-intron (ENSMUSG00000022523.10, intron 1 of 4) 6693 ENSMUSG00000076064.1 ENSMUSG00000076064 ENSMUST00000102110 Mir690 miRNA Interval_121116 chr4 153219582 153220812 + 0 NA Intergenic Intergenic 2021 ENSMUSG00000087454.1 ENSMUSG00000087454 ENSMUST00000126141 Gm13174 lincRNA Interval_95696 chr2 114354095 114354822 + 0 NA Intergenic Intergenic -81023 ENSMUSG00000101266.1 ENSMUSG00000101266 ENSMUST00000187452 Gm29234 lincRNA Interval_89920 chr2 26493136 26494014 + 0 NA intron (ENSMUSG00000026923.15, intron 2 of 33) protein_coding-intron (ENSMUSG00000026923.15, intron 2 of 33) -23456 ENSMUSG00000098548.1 ENSMUSG00000098548 ENSMUST00000183922 Mir6996 miRNA Interval_72409 chr17 29645718 29647228 + 0 NA intron (ENSMUSG00000098374.1, intron 7 of 27) protein_coding-intron (ENSMUSG00000098374.1, intron 7 of 27) 11863 ENSMUSG00000117534.1 ENSMUSG00000117534 ENSMUST00000234958 Gm20161 antisense Interval_52010 chr14 34611100 34611591 + 0 NA Intergenic Intergenic -19506 ENSMUSG00000021799.9 ENSMUSG00000021799 ENSMUST00000022331 Opn4 protein_coding Interval_85324 chr19 24701605 24701771 + 0 NA intron (ENSMUSG00000041731.13, intron 5 of 5) protein_coding-intron (ENSMUSG00000041731.13, intron 10 of 10) -8318 ENSMUSG00000097950.1 ENSMUSG00000097950 ENSMUST00000182466 Gm17800 processed_pseudogene Interval_84163 chr19 7684427 7684750 + 0 NA intron (ENSMUSG00000024757.7, intron 5 of 6) protein_coding-intron (ENSMUSG00000024757.7, intron 5 of 9) 12426 ENSMUSG00000083160.1 ENSMUSG00000083160 ENSMUST00000120027 Gm15967 processed_pseudogene Interval_116542 chr4 115242246 115242840 + 0 NA promoter-TSS (ENSMUSG00000081138.1) processed_pseudogene-promoter-TSS (ENSMUSG00000081138.1) 459 ENSMUSG00000083138.3 ENSMUSG00000083138 ENSMUST00000118278 Cyp4a29 protein_coding Interval_41605 chr12 116866917 116867145 + 0 NA intron (ENSMUSG00000056553.14, intron 6 of 22) protein_coding-intron (ENSMUSG00000056553.14, intron 6 of 22) -13929 ENSMUSG00000113795.1 ENSMUSG00000113795 ENSMUST00000220994 Gm48119 processed_pseudogene Interval_62689 chr15 96279739 96280023 + 0 NA intron (ENSMUSG00000097536.2, intron 1 of 6) lincRNA-intron (ENSMUSG00000097536.2, intron 1 of 6) 4614 ENSMUSG00000097536.2 ENSMUSG00000097536 ENSMUST00000185067 2610037D02Rik lincRNA Interval_87145 chr19 46435259 46436282 + 0 NA intron (ENSMUSG00000025231.17, intron 2 of 5) protein_coding-intron (ENSMUSG00000025231.17, intron 3 of 11) 34646 ENSMUSG00000025231.17 ENSMUSG00000025231 ENSMUST00000144341 Sufu protein_coding Interval_19211 chr10 95526592 95526946 + 0 NA intron (ENSMUSG00000074781.5, intron 1 of 2) protein_coding-intron (ENSMUSG00000074781.5, intron 1 of 3) 11115 ENSMUSG00000074781.5 ENSMUSG00000074781 ENSMUST00000217757 Ube2n protein_coding Interval_32980 chr11 113498615 113499872 + 0 NA intron (ENSMUSG00000041654.15, intron 4 of 4) protein_coding-intron (ENSMUSG00000041654.15, intron 5 of 10) 31266 ENSMUSG00000078251.2 ENSMUSG00000078251 ENSMUST00000105048 Gm16487 pseudogene Interval_52576 chr14 47634744 47635396 + 0 NA Intergenic Intergenic -28717 ENSMUSG00000021843.17 ENSMUSG00000021843 ENSMUST00000190857 Ktn1 protein_coding Interval_149192 chr7 96168660 96169726 + 0 NA Intergenic Intergenic 34343 ENSMUSG00000108528.1 ENSMUSG00000108528 ENSMUST00000205708 Gm8319 processed_pseudogene Interval_116216 chr4 108796558 108797378 + 0 NA Intergenic Intergenic -16465 ENSMUSG00000034557.14 ENSMUSG00000034557 ENSMUST00000042185 Zfyve9 protein_coding Interval_165000 chr9 43787608 43787825 + 0 NA intron (ENSMUSG00000032012.9, intron 1 of 7) protein_coding-intron (ENSMUSG00000032012.9, intron 1 of 5) 43072 ENSMUSG00000032012.9 ENSMUSG00000032012 ENSMUST00000180221 Nectin1 protein_coding Interval_149509 chr7 99232511 99232840 + 0 NA intron (ENSMUSG00000052396.7, intron 1 of 2) protein_coding-intron (ENSMUSG00000052396.7, intron 1 of 5) 5919 ENSMUSG00000052396.7 ENSMUSG00000052396 ENSMUST00000132343 Mogat2 protein_coding Interval_136797 chr6 60467077 60467258 + 0 NA Intergenic Intergenic -5053 ENSMUSG00000107863.1 ENSMUSG00000107863 ENSMUST00000203795 Gm44389 processed_pseudogene Interval_60234 chr15 68885056 68886102 + 0 NA Intergenic Intergenic -43118 ENSMUSG00000022332.8 ENSMUSG00000022332 ENSMUST00000230073 Khdrbs3 protein_coding Interval_12795 chr10 5512241 5512491 + 0 NA intron (ENSMUSG00000096054.3, intron 2 of 145) protein_coding-intron (ENSMUSG00000096054.3, intron 2 of 31) -81409 ENSMUSG00000046916.9 ENSMUSG00000046916 ENSMUST00000051809 Myct1 protein_coding Interval_8479 chr1 139843543 139844273 + 0 NA intron (ENSMUSG00000033898.17, intron 1 of 6) protein_coding-intron (ENSMUSG00000033898.17, intron 1 of 5) 14810 ENSMUSG00000033898.17 ENSMUSG00000033898 ENSMUST00000094489 Cfhr2 protein_coding Interval_52248 chr14 41004142 41004941 + 0 NA promoter-TSS (ENSMUSG00000021792.15) protein_coding-promoter-TSS (ENSMUSG00000021792.15) -8 ENSMUSG00000021792.15 ENSMUSG00000021792 ENSMUST00000152837 Prxl2a protein_coding Interval_136529 chr6 55180665 55180873 + 0 NA Intergenic Intergenic -5755 ENSMUSG00000003477.5 ENSMUSG00000003477 ENSMUST00000152720 Inmt protein_coding Interval_165769 chr9 52370804 52371004 + 0 NA Intergenic Intergenic -21593 ENSMUSG00000111561.1 ENSMUSG00000111561 ENSMUST00000214181 Gm47957 lincRNA Interval_46391 chr13 64443229 64443806 + 0 NA Intergenic Intergenic -5954 ENSMUSG00000113244.1 ENSMUSG00000113244 ENSMUST00000221428 Gm31218 lincRNA Interval_174419 chrX 151967438 151968049 + 0 NA Intergenic Intergenic -17567 ENSMUSG00000084637.1 ENSMUSG00000084637 ENSMUST00000122688 n-R5s14 rRNA Interval_173217 chrX 74296527 74297751 + 0 NA promoter-TSS (ENSMUSG00000019087.13) protein_coding-promoter-TSS (ENSMUSG00000019087.13) -6350 ENSMUSG00000019087.13 ENSMUSG00000019087 ENSMUST00000154630 Atp6ap1 protein_coding Interval_62480 chr15 93375717 93375941 + 0 NA Intergenic Intergenic 22472 ENSMUSG00000022635.9 ENSMUSG00000022635 ENSMUST00000159719 Zcrb1 protein_coding Interval_89885 chr2 26207937 26208593 + 0 NA promoter-TSS (ENSMUSG00000026934.15) protein_coding-promoter-TSS (ENSMUSG00000026934.15) 1563 ENSMUSG00000098977.1 ENSMUSG00000098977 ENSMUST00000184787 Gm27196 antisense Interval_28225 chr11 74522064 74524446 + 0 NA promoter-TSS (ENSMUSG00000038807.19) protein_coding-promoter-TSS (ENSMUSG00000038807.19) 87660 ENSMUSG00000038807.19 ENSMUSG00000038807 ENSMUST00000145524 Rap1gap2 protein_coding Interval_117901 chr4 126959552 126959848 + 0 NA intron (ENSMUSG00000042446.16, intron 1 of 3) protein_coding-intron (ENSMUSG00000042446.16, intron 1 of 29) 8199 ENSMUSG00000042446.16 ENSMUSG00000042446 ENSMUST00000123597 Zmym4 protein_coding Interval_58818 chr15 38298985 38301743 + 0 NA promoter-TSS (ENSMUSG00000037465.10) protein_coding-promoter-TSS (ENSMUSG00000037465.10) -569 ENSMUSG00000037465.10 ENSMUSG00000037465 ENSMUST00000228416 Klf10 protein_coding Interval_75152 chr17 64060549 64061046 + 0 NA intron (ENSMUSG00000000127.15, intron 14 of 17) protein_coding-intron (ENSMUSG00000000127.15, intron 14 of 17) -197006 ENSMUSG00000045506.3 ENSMUSG00000045506 ENSMUST00000050753 A930002H24Rik protein_coding Interval_76177 chr17 76118637 76118978 + 0 NA Intergenic Intergenic -7503 ENSMUSG00000065293.1 ENSMUSG00000065293 ENSMUST00000083359 Gm26124 misc_RNA Interval_4663 chr1 75802840 75803229 + 0 NA Intergenic Intergenic 166644 ENSMUSG00000082012.1 ENSMUSG00000082012 ENSMUST00000121823 Gm5257 processed_pseudogene Interval_125365 chr5 66473432 66474455 + 0 NA intron (ENSMUSG00000029207.16, intron 2 of 3) protein_coding-intron (ENSMUSG00000029207.16, intron 3 of 17) 18229 ENSMUSG00000029207.16 ENSMUSG00000029207 ENSMUST00000159847 Apbb2 protein_coding Interval_72686 chr17 31548082 31548496 + 0 NA Intergenic Intergenic 3968 ENSMUSG00000117818.1 ENSMUSG00000117818 ENSMUST00000235158 Gm50105 lincRNA Interval_45810 chr13 58230333 58230969 + 0 NA Intergenic Intergenic -1492 ENSMUSG00000114929.1 ENSMUSG00000114929 ENSMUST00000224942 Gm48441 antisense Interval_164554 chr9 38590738 38591990 + 0 NA Intergenic Intergenic -1395 ENSMUSG00000059189.3 ENSMUSG00000059189 ENSMUST00000081095 Olfr913 protein_coding Interval_100904 chr2 173261737 173262482 + 0 NA intron (ENSMUSG00000038400.15, intron 1 of 3) protein_coding-intron (ENSMUSG00000038400.15, intron 1 of 3) 14080 ENSMUSG00000038400.15 ENSMUSG00000038400 ENSMUST00000124124 Pmepa1 protein_coding Interval_25341 chr11 46528082 46528578 + 0 NA intron (ENSMUSG00000078924.1, intron 2 of 6) protein_coding-intron (ENSMUSG00000078924.1, intron 2 of 6) 4118 ENSMUSG00000078924.1 ENSMUSG00000078924 ENSMUST00000109228 Gm12169 protein_coding Interval_148886 chr7 89843238 89843773 + 0 NA intron (ENSMUSG00000030621.17, intron 7 of 10) protein_coding-intron (ENSMUSG00000030621.17, intron 2 of 8) 16287 ENSMUSG00000109150.1 ENSMUSG00000109150 ENSMUST00000207900 Gm45793 TEC Interval_168444 chr9 80506316 80506664 + 0 NA Intergenic Intergenic -41052 ENSMUSG00000032343.15 ENSMUSG00000032343 ENSMUST00000185068 Impg1 protein_coding Interval_1761 chr1 33607172 33607429 + 0 NA intron (ENSMUSG00000026134.11, intron 7 of 13) protein_coding-intron (ENSMUSG00000026134.11, intron 7 of 13) 9532 ENSMUSG00000102714.1 ENSMUSG00000102714 ENSMUST00000192891 Gm37618 TEC Interval_49707 chr13 114134571 114134870 + 0 NA intron (ENSMUSG00000114213.1, intron 7 of 13) protein_coding-intron (ENSMUSG00000042348.10, intron 4 of 4) -14304 ENSMUSG00000114696.1 ENSMUSG00000114696 ENSMUST00000223997 Gm47479 TEC Interval_7443 chr1 131382023 131382814 + 0 NA intron (ENSMUSG00000026425.15, intron 4 of 4) protein_coding-intron (ENSMUSG00000026425.15, intron 4 of 22) -3887 ENSMUSG00000104060.1 ENSMUSG00000104060 ENSMUST00000195400 Gm37954 TEC Interval_52549 chr14 47419572 47420318 + 0 NA exon (ENSMUSG00000115436.1, exon 1 of 1) processed_pseudogene-exon (ENSMUSG00000115436.1, exon 1 of 1) 244 ENSMUSG00000115436.1 ENSMUSG00000115436 ENSMUST00000226636 Gm8353 processed_pseudogene Interval_104068 chr3 58122485 58123668 + 0 NA intron (ENSMUSG00000104586.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000104586.1, intron 1 of 1) -18829 ENSMUSG00000069008.3 ENSMUSG00000069008 ENSMUST00000091117 Gm5537 processed_pseudogene Interval_6884 chr1 120357167 120357912 + 0 NA Intergenic Intergenic 16957 ENSMUSG00000036907.9 ENSMUSG00000036907 ENSMUST00000037286 C1ql2 protein_coding Interval_60464 chr15 73997064 73997804 + 0 NA exon (ENSMUSG00000116256.1, exon 3 of 5) lincRNA-exon (ENSMUSG00000116256.1, exon 3 of 5) 3479 ENSMUSG00000116256.1 ENSMUSG00000116256 ENSMUST00000230277 Gm32405 lincRNA Interval_156921 chr8 61695592 61695899 + 0 NA intron (ENSMUSG00000058056.16, intron 7 of 8) protein_coding-intron (ENSMUSG00000058056.16, intron 8 of 19) 125771 ENSMUSG00000110131.1 ENSMUSG00000110131 ENSMUST00000210904 Gm18066 processed_pseudogene Interval_50003 chr13 119485559 119486396 + 0 NA exon (ENSMUSG00000062822.8, exon 13 of 13) protein_coding-exon (ENSMUSG00000062822.8, exon 13 of 13) -2062 ENSMUSG00000074634.12 ENSMUSG00000074634 ENSMUST00000178948 Tmem267 protein_coding Interval_66294 chr16 32941752 32941985 + 0 NA intron (ENSMUSG00000022801.13, intron 1 of 17) protein_coding-intron (ENSMUSG00000022801.13, intron 1 of 20) 18650 ENSMUSG00000091997.1 ENSMUSG00000091997 ENSMUST00000163830 Gm6611 processed_pseudogene Interval_166111 chr9 56777050 56777245 + 0 NA intron (ENSMUSG00000049556.5, intron 1 of 3) protein_coding-intron (ENSMUSG00000049556.5, intron 1 of 3) -8024 ENSMUSG00000049556.5 ENSMUSG00000049556 ENSMUST00000210995 Lingo1 protein_coding Interval_128079 chr5 110748973 110749618 + 0 NA intron (ENSMUSG00000029505.17, intron 2 of 4) protein_coding-intron (ENSMUSG00000029505.17, intron 2 of 51) -7790 ENSMUSG00000096238.1 ENSMUSG00000096238 ENSMUST00000178031 Gm22583 snRNA Interval_107905 chr3 116711670 116712732 + 0 NA promoter-TSS (ENSMUSG00000027957.13) protein_coding-promoter-TSS (ENSMUSG00000027957.13) 11 ENSMUSG00000027957.13 ENSMUSG00000027957 ENSMUST00000169530 Slc35a3 protein_coding Interval_165965 chr9 55025678 55026788 + 0 NA intron (ENSMUSG00000032303.8, intron 1 of 5) protein_coding-intron (ENSMUSG00000032303.8, intron 1 of 5) 326 ENSMUSG00000032303.8 ENSMUSG00000032303 ENSMUST00000214204 Chrna3 protein_coding Interval_35508 chr12 24057450 24059345 + 0 NA intron (ENSMUSG00000073158.4, intron 3 of 3) protein_coding-intron (ENSMUSG00000073158.4, intron 3 of 3) 38849 ENSMUSG00000073158.4 ENSMUSG00000073158 ENSMUST00000101538 9030624G23Rik protein_coding Interval_114174 chr4 65791007 65791276 + 0 NA intron (ENSMUSG00000028373.16, intron 10 of 21) protein_coding-intron (ENSMUSG00000028373.16, intron 11 of 22) 185892 ENSMUSG00000051675.13 ENSMUSG00000051675 ENSMUST00000156922 Trim32 protein_coding Interval_115686 chr4 102139984 102140481 + 0 NA intron (ENSMUSG00000028525.16, intron 1 of 6) protein_coding-intron (ENSMUSG00000028525.16, intron 1 of 16) -91105 ENSMUSG00000082264.1 ENSMUSG00000082264 ENSMUST00000118151 Gm12799 processed_pseudogene Interval_62317 chr15 90042351 90042595 + 0 NA Intergenic Intergenic 12042 ENSMUSG00000095422.1 ENSMUSG00000095422 ENSMUST00000180218 Gm24415 snRNA Interval_25693 chr11 50817542 50817893 + 0 NA intron (ENSMUSG00000044807.13, intron 3 of 4) protein_coding-intron (ENSMUSG00000044807.13, intron 2 of 3) 8066 ENSMUSG00000088205.1 ENSMUSG00000088205 ENSMUST00000157580 Gm23392 rRNA Interval_24020 chr11 29559208 29560464 + 0 NA intron (ENSMUSG00000020461.10, intron 4 of 11) protein_coding-intron (ENSMUSG00000020461.10, intron 4 of 11) -6826 ENSMUSG00000081575.1 ENSMUSG00000081575 ENSMUST00000118692 Gm12090 processed_pseudogene Interval_87652 chr19 54009947 54010136 + 0 NA intron (ENSMUSG00000024976.14, intron 2 of 3) protein_coding-intron (ENSMUSG00000024976.14, intron 3 of 8) -8634 ENSMUSG00000117981.1 ENSMUSG00000117981 ENSMUST00000237905 4930484I04Rik antisense Interval_140922 chr6 122764352 122767108 + 0 NA intron (ENSMUSG00000003153.10, intron 2 of 4) protein_coding-intron (ENSMUSG00000003153.10, intron 2 of 4) 14227 ENSMUSG00000003153.10 ENSMUSG00000003153 ENSMUST00000168801 Slc2a3 protein_coding Interval_43405 chr13 30136066 30137317 + 0 NA exon (ENSMUSG00000038732.15, exon 1 of 13) protein_coding-exon (ENSMUSG00000038732.15, exon 1 of 13) 11690 ENSMUSG00000084669.1 ENSMUSG00000084669 ENSMUST00000122720 Gm23206 snRNA Interval_33796 chr11 118568746 118570715 + 0 NA exon (ENSMUSG00000025576.17, exon 1 of 5) protein_coding-exon (ENSMUSG00000025576.17, exon 1 of 5) -62377 ENSMUSG00000025576.17 ENSMUSG00000025576 ENSMUST00000134774 Rbfox3 protein_coding Interval_10221 chr1 167283907 167285559 + 0 NA promoter-TSS (ENSMUSG00000026558.13) protein_coding-promoter-TSS (ENSMUSG00000026558.13) -335 ENSMUSG00000102909.1 ENSMUSG00000102909 ENSMUST00000193383 Gm2453 lincRNA Interval_10066 chr1 165580393 165581039 + 0 NA Intergenic Intergenic -4467 ENSMUSG00000104474.1 ENSMUSG00000104474 ENSMUST00000191944 Gm38210 TEC Interval_65846 chr16 29754554 29754936 + 0 NA promoter-TSS (ENSMUSG00000116814.1) lincRNA-promoter-TSS (ENSMUSG00000116814.1) -433 ENSMUSG00000116814.1 ENSMUSG00000116814 ENSMUST00000232037 Gm49636 lincRNA Interval_2823 chr1 45882965 45884159 + 0 NA Intergenic Intergenic 6711 ENSMUSG00000098549.1 ENSMUSG00000098549 ENSMUST00000183590 Gm5269 protein_coding Interval_35244 chr12 18779294 18780040 + 0 NA Intergenic Intergenic 6173 ENSMUSG00000113646.1 ENSMUSG00000113646 ENSMUST00000220463 Gm46313 unprocessed_pseudogene Interval_13409 chr10 17915135 17916083 + 0 NA promoter-TSS (ENSMUSG00000039879.9) protein_coding-promoter-TSS (ENSMUSG00000039879.9) -407 ENSMUSG00000039879.9 ENSMUSG00000039879 ENSMUST00000218268 Heca protein_coding Interval_63315 chr15 100273934 100275643 + 0 NA Intergenic Intergenic -6053 ENSMUSG00000045631.10 ENSMUSG00000045631 ENSMUST00000230901 Tmprss12 protein_coding Interval_153607 chr8 3687760 3688311 + 0 NA intron (ENSMUSG00000005540.10, intron 6 of 9) protein_coding-intron (ENSMUSG00000005540.10, intron 8 of 11) 2792 ENSMUSG00000005540.10 ENSMUSG00000005540 ENSMUST00000207327 Fcer2a protein_coding Interval_122720 chr5 24876086 24876263 + 0 NA TTS (ENSMUSG00000087314.1) antisense-TTS (ENSMUSG00000087314.1) 2630 ENSMUSG00000087314.1 ENSMUSG00000087314 ENSMUST00000123610 Prkag2os2 antisense Interval_171309 chr9 116266806 116267153 + 0 NA Intergenic Intergenic 48177 ENSMUSG00000111324.1 ENSMUSG00000111324 ENSMUST00000217302 Gm31410 lincRNA Interval_157376 chr8 69954345 69954632 + 0 NA intron (ENSMUSG00000036180.15, intron 1 of 12) protein_coding-intron (ENSMUSG00000036180.15, intron 1 of 12) 41896 ENSMUSG00000036180.15 ENSMUSG00000036180 ENSMUST00000211960 Gatad2a protein_coding Interval_18466 chr10 86376136 86376575 + 0 NA intron (ENSMUSG00000059602.14, intron 4 of 8) protein_coding-intron (ENSMUSG00000059602.14, intron 4 of 13) 75801 ENSMUSG00000020044.13 ENSMUSG00000020044 ENSMUST00000132307 Timp3 protein_coding Interval_56259 chr14 115197634 115197978 + 0 NA intron (ENSMUSG00000022112.14, intron 2 of 7) protein_coding-intron (ENSMUSG00000022112.14, intron 2 of 7) 105591 ENSMUSG00000022112.14 ENSMUSG00000022112 ENSMUST00000022707 Gpc5 protein_coding Interval_26272 chr11 55571100 55571408 + 0 NA intron (ENSMUSG00000000263.15, intron 1 of 7) protein_coding-intron (ENSMUSG00000000263.15, intron 2 of 8) 16314 ENSMUSG00000083363.1 ENSMUSG00000083363 ENSMUST00000120158 Gm12237 processed_pseudogene Interval_94228 chr2 85718160 85718587 + 0 NA intron (ENSMUSG00000043226.5, intron 1 of 2) protein_coding-intron (ENSMUSG00000043226.5, intron 1 of 2) 2954 ENSMUSG00000043226.5 ENSMUSG00000043226 ENSMUST00000055517 Olfr1009 protein_coding Interval_105946 chr3 90231301 90232492 + 0 NA promoter-TSS (ENSMUSG00000027937.15) protein_coding-promoter-TSS (ENSMUSG00000027937.15) 262 ENSMUSG00000027937.15 ENSMUSG00000027937 ENSMUST00000123839 Jtb protein_coding Interval_61994 chr15 85715930 85716586 + 0 NA Intergenic Intergenic 8939 ENSMUSG00000065564.1 ENSMUSG00000065564 ENSMUST00000083630 Mirlet7b miRNA Interval_4160 chr1 71036746 71037321 + 0 NA intron (ENSMUSG00000026196.7, intron 9 of 10) protein_coding-intron (ENSMUSG00000026196.7, intron 9 of 10) 2997 ENSMUSG00000089965.1 ENSMUSG00000089965 ENSMUST00000159588 Gm16236 processed_pseudogene Interval_167984 chr9 75263648 75264629 + 0 NA intron (ENSMUSG00000033590.8, intron 13 of 29) protein_coding-intron (ENSMUSG00000033590.8, intron 12 of 40) 32062 ENSMUSG00000033590.8 ENSMUSG00000033590 ENSMUST00000216529 Myo5c protein_coding Interval_150077 chr7 105650553 105651445 + 0 NA intron (ENSMUSG00000030882.19, intron 1 of 43) protein_coding-intron (ENSMUSG00000110234.2, intron 3 of 3) 172 ENSMUSG00000030882.19 ENSMUSG00000030882 ENSMUST00000106776 Dnhd1 protein_coding Interval_63082 chr15 99001622 99002702 + 0 NA Intergenic Intergenic -3895 ENSMUSG00000064081.4 ENSMUSG00000064081 ENSMUST00000079818 Gm8973 processed_pseudogene Interval_161420 chr8 120363503 120364883 + 0 NA intron (ENSMUSG00000031822.20, intron 2 of 2) protein_coding-intron (ENSMUSG00000092329.1, intron 1 of 15) 79356 ENSMUSG00000080549.2 ENSMUSG00000080549 ENSMUST00000116899 Gm22715 miRNA Interval_56556 chr14 120330735 120331216 + 0 NA intron (ENSMUSG00000022139.17, intron 2 of 8) protein_coding-intron (ENSMUSG00000022139.17, intron 2 of 8) -48266 ENSMUSG00000022139.17 ENSMUSG00000022139 ENSMUST00000227153 Mbnl2 protein_coding Interval_107297 chr3 105538983 105539873 + 0 NA intron (ENSMUSG00000040896.16, intron 2 of 4) protein_coding-intron (ENSMUSG00000040896.16, intron 1 of 6) 36521 ENSMUSG00000105753.1 ENSMUSG00000105753 ENSMUST00000200070 Gm43847 sense_intronic Interval_50999 chr14 21553098 21553336 + 0 NA intron (ENSMUSG00000021767.19, intron 2 of 5) protein_coding-intron (ENSMUSG00000021767.19, intron 2 of 16) 36342 ENSMUSG00000021767.19 ENSMUSG00000021767 ENSMUST00000226589 Kat6b protein_coding Interval_16634 chr10 66640764 66641617 + 0 NA intron (ENSMUSG00000101338.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000101338.1, intron 1 of 1) 272 ENSMUSG00000101338.1 ENSMUSG00000101338 ENSMUST00000189480 Gm28139 lincRNA Interval_135030 chr6 34828499 34828714 + 0 NA intron (ENSMUSG00000038836.15, intron 14 of 17) protein_coding-intron (ENSMUSG00000038836.15, intron 15 of 19) -7707 ENSMUSG00000082446.1 ENSMUSG00000082446 ENSMUST00000118782 Gm13863 processed_pseudogene Interval_136948 chr6 65031182 65031785 + 0 NA Intergenic Intergenic -11184 ENSMUSG00000029920.9 ENSMUSG00000029920 ENSMUST00000203104 Smarcad1 protein_coding Interval_90267 chr2 29438593 29438928 + 0 NA intron (ENSMUSG00000026799.15, intron 3 of 4) protein_coding-intron (ENSMUSG00000026799.15, intron 3 of 7) -20434 ENSMUSG00000089597.1 ENSMUSG00000089597 ENSMUST00000158972 Gm24976 rRNA Interval_99502 chr2 162713187 162713387 + 0 NA Intergenic Intergenic 33832 ENSMUSG00000087536.1 ENSMUSG00000087536 ENSMUST00000155173 Gm14246 lincRNA Interval_80041 chr18 36882764 36882973 + 0 NA Intergenic Intergenic -37528 ENSMUSG00000063514.3 ENSMUSG00000063514 ENSMUST00000180647 Gm6756 processed_pseudogene Interval_155200 chr8 27409689 27410028 + 0 NA intron (ENSMUSG00000031491.10, intron 2 of 5) protein_coding-intron (ENSMUSG00000031491.10, intron 2 of 5) 4086 ENSMUSG00000031491.10 ENSMUSG00000031491 ENSMUST00000033882 Chrna6 protein_coding Interval_146647 chr7 49120969 49121905 + 0 NA TTS (ENSMUSG00000108950.1) antisense-TTS (ENSMUSG00000108950.1) 12839 ENSMUSG00000108950.1 ENSMUSG00000108950 ENSMUST00000208621 9130015G15Rik antisense Interval_51785 chr14 32186838 32187075 + 0 NA intron (ENSMUSG00000013701.13, intron 6 of 6) protein_coding-intron (ENSMUSG00000013701.13, intron 6 of 6) 5094 ENSMUSG00000077611.1 ENSMUSG00000077611 ENSMUST00000104423 Gm23946 snoRNA Interval_37316 chr12 65091673 65092048 + 0 NA intron (ENSMUSG00000055884.8, intron 5 of 10) protein_coding-intron (ENSMUSG00000055884.8, intron 5 of 22) 8146 ENSMUSG00000112992.1 ENSMUSG00000112992 ENSMUST00000223249 Gm47869 processed_pseudogene Interval_47792 chr13 92878877 92879272 + 0 NA Intergenic Intergenic -19212 ENSMUSG00000114823.1 ENSMUSG00000114823 ENSMUST00000225872 Gm31630 processed_transcript Interval_37717 chr12 71361444 71362360 + 0 NA intron (ENSMUSG00000113441.1, intron 2 of 5) lincRNA-intron (ENSMUSG00000113441.1, intron 2 of 5) 6461 ENSMUSG00000113441.1 ENSMUSG00000113441 ENSMUST00000221650 Gm40438 lincRNA Interval_70751 chr17 14166812 14167615 + 0 NA Intergenic Intergenic -36515 ENSMUSG00000117185.1 ENSMUSG00000117185 ENSMUST00000232962 Gm34510 antisense Interval_155482 chr8 33852961 33853917 + 0 NA intron (ENSMUSG00000031586.17, intron 4 of 5) protein_coding-intron (ENSMUSG00000031586.17, intron 4 of 7) 32308 ENSMUSG00000098166.1 ENSMUSG00000098166 ENSMUST00000182843 Gm26978 sense_intronic Interval_47144 chr13 76279545 76280252 + 0 NA TTS (ENSMUSG00000114242.1) antisense-TTS (ENSMUSG00000114242.1) 23932 ENSMUSG00000114242.1 ENSMUSG00000114242 ENSMUST00000225095 Gm31219 antisense Interval_84083 chr19 7108497 7108792 + 0 NA intron (ENSMUSG00000036278.7, intron 3 of 10) protein_coding-intron (ENSMUSG00000036278.7, intron 3 of 10) -2915 ENSMUSG00000047787.8 ENSMUSG00000047787 ENSMUST00000113383 Flrt1 protein_coding Interval_119101 chr4 135567830 135568197 + 0 NA intron (ENSMUSG00000037188.7, intron 1 of 15) protein_coding-intron (ENSMUSG00000037188.7, intron 1 of 15) 5617 ENSMUSG00000037188.7 ENSMUSG00000037188 ENSMUST00000105855 Grhl3 protein_coding Interval_35956 chr12 32824629 32825237 + 0 NA intron (ENSMUSG00000020572.8, intron 1 of 3) protein_coding-intron (ENSMUSG00000020572.8, intron 1 of 10) 5388 ENSMUSG00000020572.8 ENSMUSG00000020572 ENSMUST00000218491 Nampt protein_coding Interval_18714 chr10 89629660 89630656 + 0 NA Intergenic Intergenic -30343 ENSMUSG00000019935.16 ENSMUSG00000019935 ENSMUST00000105295 Slc17a8 protein_coding Interval_156346 chr8 47583001 47583570 + 0 NA Intergenic Intergenic -8383 ENSMUSG00000098402.1 ENSMUSG00000098402 ENSMUST00000184727 Gm27409 miRNA Interval_161020 chr8 116947724 116947970 + 0 NA intron (ENSMUSG00000047388.10, intron 1 of 3) protein_coding-intron (ENSMUSG00000047388.10, intron 1 of 3) 4454 ENSMUSG00000047388.10 ENSMUSG00000047388 ENSMUST00000109099 Atmin protein_coding Interval_113337 chr4 53542045 53542274 + 0 NA intron (ENSMUSG00000028412.17, intron 8 of 15) protein_coding-intron (ENSMUSG00000028412.17, intron 8 of 15) 22538 ENSMUSG00000084970.1 ENSMUSG00000084970 ENSMUST00000138377 1700060J05Rik antisense Interval_118875 chr4 134203552 134203815 + 0 NA promoter-TSS (ENSMUSG00000073747.2) protein_coding-promoter-TSS (ENSMUSG00000073747.2) -679 ENSMUSG00000073747.2 ENSMUSG00000073747 ENSMUST00000097849 Zpld2 protein_coding Interval_93675 chr2 75767392 75769417 + 0 NA Intergenic Intergenic -8784 ENSMUSG00000086813.1 ENSMUSG00000086813 ENSMUST00000135682 Gm13657 processed_transcript Interval_107915 chr3 116750710 116751583 + 0 NA intron (ENSMUSG00000033400.14, intron 29 of 32) protein_coding-intron (ENSMUSG00000033400.14, intron 30 of 33) -38934 ENSMUSG00000027957.13 ENSMUSG00000027957 ENSMUST00000169530 Slc35a3 protein_coding Interval_148365 chr7 80781131 80782570 + 0 NA intron (ENSMUSG00000030536.10, intron 2 of 13) protein_coding-intron (ENSMUSG00000030536.10, intron 2 of 37) 21413 ENSMUSG00000030536.10 ENSMUSG00000030536 ENSMUST00000205540 Iqgap1 protein_coding Interval_130716 chr5 129959486 129961071 + 0 NA intron (ENSMUSG00000066735.8, intron 1 of 1) protein_coding-intron (ENSMUSG00000066735.8, intron 1 of 2) -4088 ENSMUSG00000106757.1 ENSMUSG00000106757 ENSMUST00000202797 Gm43482 TEC Interval_130968 chr5 134322995 134324691 + 0 NA Intergenic Intergenic -2611 ENSMUSG00000093311.1 ENSMUSG00000093311 ENSMUST00000175570 Mir3965 miRNA Interval_158941 chr8 88137673 88138638 + 0 NA promoter-TSS (ENSMUSG00000099080.1) miRNA-promoter-TSS (ENSMUSG00000099080.1) -51 ENSMUSG00000099080.1 ENSMUSG00000099080 ENSMUST00000184847 Mir7071 miRNA Interval_6954 chr1 121340167 121340569 + 0 NA Intergenic Intergenic 12276 ENSMUSG00000104253.1 ENSMUSG00000104253 ENSMUST00000194699 Gm37174 TEC Interval_32572 chr11 108703087 108703283 + 0 NA intron (ENSMUSG00000020728.17, intron 1 of 4) protein_coding-intron (ENSMUSG00000020728.17, intron 22 of 27) -13298 ENSMUSG00000083723.1 ENSMUSG00000083723 ENSMUST00000118777 Rpl23a-ps14 processed_pseudogene Interval_149221 chr7 96391006 96391733 + 0 NA intron (ENSMUSG00000048078.16, intron 2 of 2) protein_coding-intron (ENSMUSG00000048078.16, intron 2 of 32) 44648 ENSMUSG00000082780.2 ENSMUSG00000082780 ENSMUST00000117302 Rps11-ps5 processed_pseudogene Interval_96858 chr2 129056408 129058078 + 0 NA Intergenic Intergenic 8443 ENSMUSG00000087151.1 ENSMUSG00000087151 ENSMUST00000143857 Gm14022 processed_transcript Interval_595 chr1 8472316 8472861 + 0 NA intron (ENSMUSG00000025909.16, intron 15 of 20) protein_coding-intron (ENSMUSG00000025909.16, intron 11 of 16) -3763 ENSMUSG00000086235.1 ENSMUSG00000086235 ENSMUST00000140995 Gm16284 processed_pseudogene Interval_2517 chr1 39911281 39911951 + 0 NA intron (ENSMUSG00000026074.15, intron 2 of 31) protein_coding-intron (ENSMUSG00000026074.15, intron 2 of 30) 10437 ENSMUSG00000026074.15 ENSMUSG00000026074 ENSMUST00000191657 Map4k4 protein_coding Interval_80206 chr18 38249893 38250920 + 0 NA promoter-TSS (ENSMUSG00000097080.8) lincRNA-promoter-TSS (ENSMUSG00000097080.8) 151 ENSMUSG00000024442.6 ENSMUSG00000024442 ENSMUST00000236841 Dele1 protein_coding Interval_84593 chr19 13981254 13981499 + 0 NA Intergenic Intergenic 36995 ENSMUSG00000098074.1 ENSMUSG00000098074 ENSMUST00000182766 Gm26993 processed_pseudogene Interval_144546 chr7 25813625 25814514 + 0 NA intron (ENSMUSG00000040703.11, intron 2 of 4) protein_coding-intron (ENSMUSG00000040703.11, intron 2 of 8) 1323 ENSMUSG00000040703.11 ENSMUSG00000040703 ENSMUST00000156714 Cyp2s1 protein_coding Interval_127106 chr5 100336729 100338319 + 0 NA intron (ENSMUSG00000085915.1, intron 1 of 4) unprocessed_pseudogene-intron (ENSMUSG00000085915.1, intron 1 of 4) 17595 ENSMUSG00000085915.1 ENSMUSG00000085915 ENSMUST00000150506 Gm8091 unprocessed_pseudogene Interval_78467 chr18 13064518 13065001 + 0 NA Intergenic Intergenic 57722 ENSMUSG00000037346.5 ENSMUSG00000037346 ENSMUST00000234565 Hrh4 protein_coding Interval_87441 chr19 50874963 50875270 + 0 NA Intergenic Intergenic 62792 ENSMUSG00000089094.1 ENSMUSG00000089094 ENSMUST00000158469 Gm25659 rRNA Interval_37040 chr12 56699919 56700500 + 0 NA intron (ENSMUSG00000001497.18, intron 4 of 4) protein_coding-intron (ENSMUSG00000001497.18, intron 3 of 3) -7245 ENSMUSG00000089894.2 ENSMUSG00000089894 ENSMUST00000159874 Gm15524 antisense Interval_113913 chr4 59824939 59825525 + 0 NA intron (ENSMUSG00000028385.14, intron 1 of 8) protein_coding-intron (ENSMUSG00000028385.14, intron 1 of 8) -8445 ENSMUSG00000080772.1 ENSMUSG00000080772 ENSMUST00000120410 Gm12543 transcribed_processed_pseudogene Interval_170509 chr9 108404507 108405411 + 0 NA exon (ENSMUSG00000047220.5, exon 7 of 7) protein_coding-exon (ENSMUSG00000047220.5, exon 7 of 7) 12154 ENSMUSG00000032611.9 ENSMUSG00000032611 ENSMUST00000035234 1700102P08Rik protein_coding Interval_137837 chr6 82854494 82856883 + 0 NA Intergenic Intergenic 24254 ENSMUSG00000108015.3 ENSMUSG00000108015 ENSMUST00000203038 Gm32591 lincRNA Interval_144046 chr7 19175588 19176788 + 0 NA promoter-TSS (ENSMUSG00000040811.15) protein_coding-promoter-TSS (ENSMUSG00000040811.15) -4993 ENSMUSG00000040811.15 ENSMUSG00000040811 ENSMUST00000146095 Eml2 protein_coding Interval_112052 chr4 33551615 33551923 + 0 NA Intergenic Intergenic 77192 ENSMUSG00000096184.1 ENSMUSG00000096184 ENSMUST00000180209 Gm23304 miRNA Interval_10277 chr1 167896032 167896756 + 0 NA Intergenic Intergenic -107745 ENSMUSG00000093538.2 ENSMUSG00000093538 ENSMUST00000177351 Gm20711 antisense Interval_76300 chr17 78894823 78895989 + 0 NA promoter-TSS (ENSMUSG00000038045.14) protein_coding-promoter-TSS (ENSMUSG00000038045.14) 11586 ENSMUSG00000038045.14 ENSMUSG00000038045 ENSMUST00000159710 Sult6b1 protein_coding Interval_67106 chr16 43142458 43143509 + 0 NA intron (ENSMUSG00000022708.16, intron 4 of 8) protein_coding-intron (ENSMUSG00000022708.16, intron 4 of 14) 16750 ENSMUSG00000094605.1 ENSMUSG00000094605 ENSMUST00000180317 Gm25873 snRNA Interval_136324 chr6 53032486 53032695 + 0 NA intron (ENSMUSG00000063568.11, intron 1 of 4) protein_coding-intron (ENSMUSG00000063568.11, intron 1 of 4) -13294 ENSMUSG00000080759.1 ENSMUSG00000080759 ENSMUST00000119487 Gm15573 processed_pseudogene Interval_55580 chr14 93472823 93473035 + 0 NA intron (ENSMUSG00000055421.8, intron 2 of 3) protein_coding-intron (ENSMUSG00000055421.8, intron 2 of 3) -145917 ENSMUSG00000115023.1 ENSMUSG00000115023 ENSMUST00000228155 Gm48967 TEC Interval_125524 chr5 68062163 68062881 + 0 NA intron (ENSMUSG00000068082.12, intron 1 of 3) protein_coding-intron (ENSMUSG00000068082.12, intron 1 of 3) 21852 ENSMUSG00000106747.1 ENSMUSG00000106747 ENSMUST00000201764 Gm43025 TEC Interval_110129 chr3 153580833 153582593 + 0 NA intron (ENSMUSG00000052544.9, intron 1 of 4) protein_coding-intron (ENSMUSG00000052544.9, intron 1 of 2) -39989 ENSMUSG00000089376.1 ENSMUSG00000089376 ENSMUST00000158751 Gm22136 misc_RNA Interval_129967 chr5 123366772 123367416 + 0 NA promoter-TSS (ENSMUSG00000104830.1) processed_transcript-promoter-TSS (ENSMUSG00000104830.1) 95 ENSMUSG00000104830.1 ENSMUSG00000104830 ENSMUST00000200118 5830487J09Rik processed_transcript Interval_15860 chr10 58479383 58479587 + 0 NA exon (ENSMUSG00000003226.7, exon 20 of 29) protein_coding-exon (ENSMUSG00000003226.7, exon 20 of 29) -18720 ENSMUSG00000038010.9 ENSMUSG00000038010 ENSMUST00000217992 Ccdc138 protein_coding Interval_103899 chr3 54729140 54729495 + 0 NA TTS (ENSMUSG00000027751.13) protein_coding-TTS (ENSMUSG00000027751.13) 5718 ENSMUSG00000027752.15 ENSMUSG00000027752 ENSMUST00000198780 Exosc8 protein_coding Interval_167110 chr9 65363527 65363810 + 0 NA intron (ENSMUSG00000086228.3, intron 1 of 6) protein_coding-intron (ENSMUSG00000086228.3, intron 1 of 6) -1219 ENSMUSG00000111092.1 ENSMUSG00000111092 ENSMUST00000216005 Gm17875 processed_pseudogene Interval_83503 chr18 88177192 88177510 + 0 NA Intergenic Intergenic -80801 ENSMUSG00000117801.1 ENSMUSG00000117801 ENSMUST00000237897 Gm50391 processed_pseudogene Interval_139007 chr6 94180429 94181077 + 0 NA intron (ENSMUSG00000045095.16, intron 2 of 2) protein_coding-intron (ENSMUSG00000045095.16, intron 1 of 21) 143281 ENSMUSG00000107545.1 ENSMUSG00000107545 ENSMUST00000204466 Gm44307 processed_pseudogene Interval_80815 chr18 47477403 47477737 + 0 NA promoter-TSS (ENSMUSG00000118180.1) lincRNA-promoter-TSS (ENSMUSG00000118180.1) 66 ENSMUSG00000118180.1 ENSMUSG00000118180 ENSMUST00000236646 Gm50223 lincRNA Interval_43997 chr13 38904250 38904509 + 0 NA intron (ENSMUSG00000114767.1, intron 6 of 6) lincRNA-intron (ENSMUSG00000114767.1, intron 6 of 6) -5792 ENSMUSG00000087909.1 ENSMUSG00000087909 ENSMUST00000157284 Gm22035 misc_RNA Interval_151951 chr7 127727407 127728194 + 0 NA intron (ENSMUSG00000060034.5, intron 1 of 2) protein_coding-intron (ENSMUSG00000060034.5, intron 1 of 2) 4366 ENSMUSG00000060034.5 ENSMUSG00000060034 ENSMUST00000206038 Ctf2 protein_coding Interval_164407 chr9 36792386 36792719 + 0 NA intron (ENSMUSG00000062762.17, intron 2 of 10) protein_coding-intron (ENSMUSG00000062762.17, intron 2 of 10) 4516 ENSMUSG00000062762.17 ENSMUSG00000062762 ENSMUST00000217339 Ei24 protein_coding Interval_138825 chr6 92241151 92241611 + 0 NA TTS (ENSMUSG00000005892.4) protein_coding-TTS (ENSMUSG00000005892.4) 3269 ENSMUSG00000005892.4 ENSMUSG00000005892 ENSMUST00000006046 Trh protein_coding Interval_116953 chr4 118417453 118417860 + 0 NA Intergenic Intergenic 7308 ENSMUSG00000006392.16 ENSMUSG00000006392 ENSMUST00000135201 Med8 protein_coding Interval_118984 chr4 134865182 134865379 + 0 NA intron (ENSMUSG00000028825.7, intron 1 of 9) protein_coding-intron (ENSMUSG00000028825.7, intron 1 of 9) -14530 ENSMUSG00000028825.7 ENSMUSG00000028825 ENSMUST00000136163 Rhd protein_coding Interval_121202 chr4 154011157 154012827 + 0 NA exon (ENSMUSG00000029028.14, exon 1 of 7) protein_coding-exon (ENSMUSG00000029028.14, exon 1 of 7) 261 ENSMUSG00000029028.14 ENSMUSG00000029028 ENSMUST00000163672 Lrrc47 protein_coding Interval_139826 chr6 109382706 109382962 + 0 NA Intergenic Intergenic 4088 ENSMUSG00000107404.1 ENSMUSG00000107404 ENSMUST00000203068 Gm44125 processed_pseudogene Interval_6938 chr1 121082777 121083098 + 0 NA Intergenic Intergenic -4534 ENSMUSG00000097881.7 ENSMUSG00000097881 ENSMUST00000181183 Celrr lincRNA Interval_81878 chr18 65580479 65582843 + 0 NA promoter-TSS (ENSMUSG00000042439.13) protein_coding-promoter-TSS (ENSMUSG00000042439.13) 215 ENSMUSG00000042439.13 ENSMUSG00000042439 ENSMUST00000183303 Zfp532 protein_coding Interval_138846 chr6 92501028 92501243 + 0 NA intron (ENSMUSG00000030020.13, intron 2 of 8) protein_coding-intron (ENSMUSG00000030020.13, intron 2 of 8) -60642 ENSMUSG00000098130.1 ENSMUSG00000098130 ENSMUST00000182175 Gm17797 processed_pseudogene Interval_44422 chr13 44761718 44761922 + 0 NA intron (ENSMUSG00000038518.15, intron 2 of 4) protein_coding-intron (ENSMUSG00000038518.15, intron 2 of 18) 30450 ENSMUSG00000038518.15 ENSMUSG00000038518 ENSMUST00000173003 Jarid2 protein_coding Interval_121033 chr4 152335044 152335419 + 0 NA Intergenic Intergenic -3420 ENSMUSG00000005045.16 ENSMUSG00000005045 ENSMUST00000124423 Chd5 protein_coding Interval_156542 chr8 50500486 50500809 + 0 NA intron (ENSMUSG00000109741.1, intron 2 of 3) lincRNA-intron (ENSMUSG00000109741.1, intron 2 of 3) 16995 ENSMUSG00000109741.1 ENSMUSG00000109741 ENSMUST00000211156 Gm45455 lincRNA Interval_99242 chr2 158347773 158348358 + 0 NA Intergenic Intergenic 8489 ENSMUSG00000065362.1 ENSMUSG00000065362 ENSMUST00000083428 Gm24411 snoRNA Interval_137288 chr6 71082035 71082596 + 0 NA Intergenic Intergenic 24196 ENSMUSG00000107446.1 ENSMUSG00000107446 ENSMUST00000203194 Gm43906 TEC Interval_166080 chr9 56488669 56489170 + 0 NA exon (ENSMUSG00000032329.4, exon 8 of 8) protein_coding-exon (ENSMUSG00000032329.4, exon 8 of 8) 17742 ENSMUSG00000111343.1 ENSMUSG00000111343 ENSMUST00000216940 Gm47175 TEC Interval_45106 chr13 52252148 52253458 + 0 NA Intergenic Intergenic 72392 ENSMUSG00000113399.1 ENSMUSG00000113399 ENSMUST00000222876 Gm48199 lincRNA Interval_113516 chr4 55471199 55471744 + 0 NA Intergenic Intergenic -2312 ENSMUSG00000077635.1 ENSMUSG00000077635 ENSMUST00000104447 Gm22150 snoRNA Interval_67670 chr16 55858302 55859126 + 0 NA intron (ENSMUSG00000075033.4, intron 4 of 5) protein_coding-intron (ENSMUSG00000075033.4, intron 4 of 5) 25777 ENSMUSG00000116919.1 ENSMUSG00000116919 ENSMUST00000232524 Gm17809 processed_pseudogene Interval_111128 chr4 12507040 12507313 + 0 NA Intergenic Intergenic -90212 ENSMUSG00000104211.1 ENSMUSG00000104211 ENSMUST00000194728 Gm37985 TEC Interval_80092 chr18 37477760 37477992 + 0 NA promoter-TSS (ENSMUSG00000047910.6) protein_coding-promoter-TSS (ENSMUSG00000047910.6) 62 ENSMUSG00000047910.6 ENSMUSG00000047910 ENSMUST00000051442 Pcdhb16 protein_coding Interval_47196 chr13 77798878 77799787 + 0 NA intron (ENSMUSG00000064138.14, intron 3 of 5) protein_coding-intron (ENSMUSG00000064138.14, intron 3 of 9) 97299 ENSMUSG00000064138.14 ENSMUSG00000064138 ENSMUST00000224013 Fam172a protein_coding Interval_126047 chr5 77088052 77088248 + 0 NA intron (ENSMUSG00000059325.14, intron 1 of 1) protein_coding-intron (ENSMUSG00000059325.14, intron 2 of 2) -6382 ENSMUSG00000087541.1 ENSMUSG00000087541 ENSMUST00000148568 Hopxos antisense Interval_19141 chr10 95059119 95060290 + 0 NA Intergenic Intergenic -56675 ENSMUSG00000112677.1 ENSMUSG00000112677 ENSMUST00000219913 Gm48868 TEC Interval_120843 chr4 150977347 150978428 + 0 NA intron (ENSMUSG00000014592.21, intron 24 of 24) protein_coding-intron (ENSMUSG00000014592.21, intron 24 of 24) 13152 ENSMUSG00000064476.1 ENSMUSG00000064476 ENSMUST00000082542 Gm23405 snRNA Interval_103936 chr3 55139680 55140585 + 0 NA promoter-TSS (ENSMUSG00000048655.17) protein_coding-promoter-TSS (ENSMUSG00000048655.17) -2156 ENSMUSG00000048655.17 ENSMUSG00000048655 ENSMUST00000161120 Ccdc169 protein_coding Interval_106974 chr3 102333008 102333287 + 0 NA intron (ENSMUSG00000105891.4, intron 2 of 4) lincRNA-intron (ENSMUSG00000105891.4, intron 2 of 4) -36015 ENSMUSG00000105966.1 ENSMUSG00000105966 ENSMUST00000199507 Gm43242 lincRNA Interval_468 chr1 6005545 6006852 + 0 NA Intergenic Intergenic 43847 ENSMUSG00000103090.1 ENSMUSG00000103090 ENSMUST00000191956 Gm19214 processed_pseudogene Interval_134726 chr6 30981744 30982048 + 0 NA Intergenic Intergenic -22818 ENSMUSG00000073209.4 ENSMUSG00000073209 ENSMUST00000101589 Klf14 protein_coding Interval_1577 chr1 27281096 27281484 + 0 NA Intergenic Intergenic 55478 ENSMUSG00000100310.1 ENSMUSG00000100310 ENSMUST00000188432 Gm19641 processed_pseudogene Interval_169896 chr9 102791961 102793725 + 0 NA Intergenic Intergenic 21348 ENSMUSG00000110884.1 ENSMUSG00000110884 ENSMUST00000217446 Gm47416 lincRNA Interval_90455 chr2 30565129 30565963 + 0 NA Intergenic Intergenic 30817 ENSMUSG00000085275.1 ENSMUSG00000085275 ENSMUST00000145413 Gm14487 lincRNA Interval_64407 chr16 11191268 11191569 + 0 NA promoter-TSS (ENSMUSG00000081052.1) processed_pseudogene-promoter-TSS (ENSMUSG00000081052.1) -153 ENSMUSG00000081052.1 ENSMUSG00000081052 ENSMUST00000121027 Gm6305 processed_pseudogene Interval_100538 chr2 170016879 170017512 + 0 NA intron (ENSMUSG00000047907.11, intron 1 of 1) protein_coding-intron (ENSMUSG00000047907.11, intron 1 of 1) -54008 ENSMUSG00000103935.1 ENSMUSG00000103935 ENSMUST00000194482 AY702102 TEC Interval_41245 chr12 112106293 112107714 + 0 NA promoter-TSS (ENSMUSG00000037686.6) protein_coding-promoter-TSS (ENSMUSG00000037686.6) 324 ENSMUSG00000037686.6 ENSMUSG00000037686 ENSMUST00000222970 Aspg protein_coding Interval_64330 chr16 10542599 10543279 + 0 NA exon (ENSMUSG00000038055.12, exon 1 of 2) protein_coding-exon (ENSMUSG00000038055.12, exon 1 of 2) 115 ENSMUSG00000038055.12 ENSMUSG00000038055 ENSMUST00000038281 Dexi protein_coding Interval_4111 chr1 68637340 68637732 + 0 NA intron (ENSMUSG00000062209.15, intron 2 of 18) protein_coding-intron (ENSMUSG00000062209.15, intron 2 of 27) 3293 ENSMUSG00000104508.1 ENSMUSG00000104508 ENSMUST00000193995 Gm37735 TEC Interval_111560 chr4 23287863 23289019 + 0 NA intron (ENSMUSG00000087098.1, intron 1 of 4) lincRNA-intron (ENSMUSG00000087098.1, intron 1 of 4) 27657 ENSMUSG00000087098.1 ENSMUSG00000087098 ENSMUST00000131639 Gm11884 lincRNA Interval_59031 chr15 41869097 41869764 + 0 NA exon (ENSMUSG00000042895.6, exon 1 of 2) protein_coding-exon (ENSMUSG00000042895.6, exon 1 of 2) 290 ENSMUSG00000042895.6 ENSMUSG00000042895 ENSMUST00000054742 Abra protein_coding Interval_135463 chr6 39450521 39451268 + 0 NA Intergenic Intergenic -28475 ENSMUSG00000064900.1 ENSMUSG00000064900 ENSMUST00000082966 Gm25402 snoRNA Interval_113493 chr4 55342351 55343379 + 0 NA Intergenic Intergenic -7225 ENSMUSG00000028426.10 ENSMUSG00000028426 ENSMUST00000156263 Rad23b protein_coding Interval_36678 chr12 51974331 51974671 + 0 NA Intergenic Intergenic -20535 ENSMUSG00000112064.1 ENSMUSG00000112064 ENSMUST00000218223 Gm47399 processed_pseudogene Interval_58069 chr15 27601133 27601967 + 0 NA intron (ENSMUSG00000046034.8, intron 1 of 1) protein_coding-intron (ENSMUSG00000046034.8, intron 1 of 1) 29128 ENSMUSG00000046034.8 ENSMUSG00000046034 ENSMUST00000228439 Otulin protein_coding Interval_86589 chr19 41918903 41920216 + 0 NA TTS (ENSMUSG00000011752.7) protein_coding-TTS (ENSMUSG00000011752.7) 7521 ENSMUSG00000011752.7 ENSMUSG00000011752 ENSMUST00000235468 Pgam1 protein_coding Interval_46878 chr13 73033014 73033647 + 0 NA Intergenic Intergenic -200065 ENSMUSG00000113952.1 ENSMUSG00000113952 ENSMUST00000223231 Rpl31-ps2 processed_pseudogene Interval_68770 chr16 85952004 85952235 + 0 NA Intergenic Intergenic -50291 ENSMUSG00000022894.6 ENSMUSG00000022894 ENSMUST00000023611 Adamts5 protein_coding Interval_157751 chr8 72739121 72739747 + 0 NA exon (ENSMUSG00000031622.16, exon 6 of 19) protein_coding-exon (ENSMUSG00000031622.16, exon 6 of 19) -1417 ENSMUSG00000031622.16 ENSMUSG00000031622 ENSMUST00000212677 Sin3b protein_coding Interval_58115 chr15 28051033 28051878 + 0 NA Intergenic Intergenic 10446 ENSMUSG00000115058.1 ENSMUSG00000115058 ENSMUST00000227963 Gm19883 processed_pseudogene Interval_160065 chr8 106136485 106138755 + 0 NA promoter-TSS (ENSMUSG00000084128.10) protein_coding-promoter-TSS (ENSMUSG00000084128.10) 555 ENSMUSG00000086390.7 ENSMUSG00000086390 ENSMUST00000145343 1810019D21Rik processed_transcript Interval_83227 chr18 82877295 82877828 + 0 NA Intergenic Intergenic 21667 ENSMUSG00000097738.2 ENSMUSG00000097738 ENSMUST00000180631 4930445N18Rik lincRNA Interval_141364 chr6 127692324 127692776 + 0 NA intron (ENSMUSG00000030350.8, intron 8 of 9) protein_coding-intron (ENSMUSG00000030350.8, intron 8 of 9) 48110 ENSMUSG00000107253.1 ENSMUSG00000107253 ENSMUST00000202671 Gm43634 lincRNA Interval_169013 chr9 90198416 90199005 + 0 NA intron (ENSMUSG00000032363.15, intron 23 of 23) protein_coding-intron (ENSMUSG00000032363.15, intron 23 of 23) 22915 ENSMUSG00000081520.1 ENSMUSG00000081520 ENSMUST00000120385 Gm16200 processed_pseudogene Interval_48920 chr13 104843490 104843680 + 0 NA Intergenic Intergenic 19834 ENSMUSG00000042655.5 ENSMUSG00000042655 ENSMUST00000225969 Shisal2b protein_coding Interval_160608 chr8 111027340 111028068 + 0 NA promoter-TSS (ENSMUSG00000033658.16) protein_coding-promoter-TSS (ENSMUSG00000033658.16) 4047 ENSMUSG00000033658.16 ENSMUSG00000033658 ENSMUST00000065784 Ddx19b protein_coding Interval_129366 chr5 119572347 119573212 + 0 NA intron (ENSMUSG00000087516.7, intron 3 of 5) antisense-intron (ENSMUSG00000087516.7, intron 1 of 3) 25425 ENSMUSG00000106991.1 ENSMUSG00000106991 ENSMUST00000202546 Gm43399 TEC Interval_114872 chr4 86596705 86597543 + 0 NA intron (ENSMUSG00000038047.18, intron 8 of 14) protein_coding-intron (ENSMUSG00000038047.18, intron 8 of 16) -10541 ENSMUSG00000088958.1 ENSMUSG00000088958 ENSMUST00000158333 Scarna8 scaRNA Interval_13636 chr10 20323161 20323661 + 0 NA promoter-TSS (ENSMUSG00000037608.16) protein_coding-promoter-TSS (ENSMUSG00000037608.16) 10879 ENSMUSG00000037608.16 ENSMUSG00000037608 ENSMUST00000188546 Bclaf1 protein_coding Interval_116031 chr4 107121164 107121542 + 0 NA Intergenic Intergenic -5260 ENSMUSG00000085304.1 ENSMUSG00000085304 ENSMUST00000145510 Gm12802 antisense Interval_9223 chr1 155217027 155217355 + 0 NA TTS (ENSMUSG00000033722.9) protein_coding-TTS (ENSMUSG00000033722.9) 8234 ENSMUSG00000033722.9 ENSMUSG00000033722 ENSMUST00000188492 BC034090 protein_coding Interval_98170 chr2 149203678 149204545 + 0 NA Intergenic Intergenic -53166 ENSMUSG00000086963.1 ENSMUSG00000086963 ENSMUST00000135438 Gm14135 lincRNA Interval_151213 chr7 119744061 119745426 + 0 NA promoter-TSS (ENSMUSG00000109404.1) processed_pseudogene-promoter-TSS (ENSMUSG00000109404.1) -633 ENSMUSG00000109404.1 ENSMUSG00000109404 ENSMUST00000208413 Gm19963 processed_pseudogene Interval_98495 chr2 152771972 152773655 + 0 NA promoter-TSS (ENSMUSG00000093306.1) miRNA-promoter-TSS (ENSMUSG00000093306.1) 76 ENSMUSG00000093306.1 ENSMUSG00000093306 ENSMUST00000175565 Gm23802 miRNA Interval_153023 chr7 140941335 140942217 + 0 NA promoter-TSS (ENSMUSG00000062031.13) protein_coding-promoter-TSS (ENSMUSG00000062031.13) 210 ENSMUSG00000062031.13 ENSMUSG00000062031 ENSMUST00000163094 Pgghg protein_coding Interval_127861 chr5 108304575 108304931 + 0 NA Intergenic Intergenic -7856 ENSMUSG00000029263.15 ENSMUSG00000029263 ENSMUST00000118910 Pigg protein_coding Interval_88261 chr19 61301703 61302087 + 0 NA Intergenic Intergenic 3385 ENSMUSG00000118197.1 ENSMUSG00000118197 ENSMUST00000237261 Gm20762 processed_pseudogene Interval_80353 chr18 39875667 39876300 + 0 NA Intergenic Intergenic 53391 ENSMUSG00000118015.1 ENSMUSG00000118015 ENSMUST00000237624 Gm41708 lincRNA Interval_48128 chr13 96465122 96465920 + 0 NA intron (ENSMUSG00000047117.13, intron 1 of 13) protein_coding-intron (ENSMUSG00000047117.13, intron 1 of 14) 5639 ENSMUSG00000047117.13 ENSMUSG00000047117 ENSMUST00000181613 Ankdd1b protein_coding Interval_121154 chr4 153585402 153586515 + 0 NA Intergenic Intergenic -103779 ENSMUSG00000039546.9 ENSMUSG00000039546 ENSMUST00000149177 Ajap1 protein_coding Interval_93002 chr2 69476541 69477198 + 0 NA intron (ENSMUSG00000027070.14, intron 46 of 78) protein_coding-intron (ENSMUSG00000027070.14, intron 46 of 78) 32276 ENSMUSG00000027070.14 ENSMUSG00000027070 ENSMUST00000092551 Lrp2 protein_coding Interval_126553 chr5 90213605 90214150 + 0 NA TTS (ENSMUSG00000035505.14) protein_coding-TTS (ENSMUSG00000035505.14) 2145 ENSMUSG00000035505.14 ENSMUSG00000035505 ENSMUST00000148480 Cox18 protein_coding Interval_10077 chr1 165652234 165653952 + 0 NA intron (ENSMUSG00000040723.14, intron 5 of 5) protein_coding-intron (ENSMUSG00000040723.14, intron 6 of 6) -8405 ENSMUSG00000104517.1 ENSMUSG00000104517 ENSMUST00000192126 Gm18407 processed_pseudogene Interval_2085 chr1 36307345 36308887 + 0 NA exon (ENSMUSG00000037447.16, exon 1 of 1) protein_coding-exon (ENSMUSG00000037447.16, exon 1 of 1) 358 ENSMUSG00000037447.16 ENSMUSG00000037447 ENSMUST00000141121 Arid5a protein_coding Interval_20345 chr10 117023919 117024807 + 0 NA exon (ENSMUSG00000020169.4, exon 10 of 10) protein_coding-exon (ENSMUSG00000020169.4, exon 10 of 10) -19383 ENSMUSG00000112242.1 ENSMUSG00000112242 ENSMUST00000217799 Gm10747 lincRNA Interval_137371 chr6 71757540 71757840 + 0 NA intron (ENSMUSG00000052852.8, intron 2 of 8) protein_coding-intron (ENSMUSG00000052852.8, intron 2 of 6) -32978 ENSMUSG00000108802.1 ENSMUSG00000108802 ENSMUST00000206120 Gm44769 TEC Interval_142142 chr6 137582489 137582702 + 0 NA intron (ENSMUSG00000015766.14, intron 1 of 20) protein_coding-intron (ENSMUSG00000015766.14, intron 2 of 21) 10980 ENSMUSG00000107878.1 ENSMUSG00000107878 ENSMUST00000203153 Gm44106 TEC Interval_66529 chr16 34897012 34897238 + 0 NA intron (ENSMUSG00000022836.11, intron 10 of 31) protein_coding-intron (ENSMUSG00000022836.11, intron 10 of 31) -8014 ENSMUSG00000022836.11 ENSMUSG00000022836 ENSMUST00000231589 Mylk protein_coding Interval_114169 chr4 65613526 65614662 + 0 NA TTS (ENSMUSG00000051675.13) protein_coding-TTS (ENSMUSG00000051675.13) 8845 ENSMUSG00000051675.13 ENSMUSG00000051675 ENSMUST00000156922 Trim32 protein_coding Interval_91858 chr2 50466088 50466336 + 0 NA Intergenic Intergenic 55648 ENSMUSG00000081457.1 ENSMUSG00000081457 ENSMUST00000120419 Gm13488 processed_pseudogene Interval_101544 chr3 4784139 4784398 + 0 NA Intergenic Intergenic -13290 ENSMUSG00000098659.7 ENSMUSG00000098659 ENSMUST00000183632 1110015O18Rik lincRNA Interval_81846 chr18 65257365 65257712 + 0 NA Intergenic Intergenic 8677 ENSMUSG00000065402.1 ENSMUSG00000065402 ENSMUST00000083468 Mir122 miRNA Interval_65273 chr16 21173727 21174047 + 0 NA Intergenic Intergenic -19887 ENSMUSG00000090356.2 ENSMUSG00000090356 ENSMUST00000170665 Teddm3 protein_coding Interval_87886 chr19 56880816 56881350 + 0 NA intron (ENSMUSG00000025082.8, intron 1 of 13) protein_coding-intron (ENSMUSG00000025082.8, intron 1 of 13) 6834 ENSMUSG00000025082.8 ENSMUSG00000025082 ENSMUST00000026068 Vwa2 protein_coding Interval_80500 chr18 42948166 42948391 + 0 NA intron (ENSMUSG00000117792.1, intron 2 of 3) protein_coding-intron (ENSMUSG00000024500.20, intron 1 of 8) 12808 ENSMUSG00000084959.1 ENSMUSG00000084959 ENSMUST00000151215 4933407I08Rik antisense Interval_112044 chr4 33465690 33466026 + 0 NA intron (ENSMUSG00000028274.17, intron 14 of 15) protein_coding-intron (ENSMUSG00000028274.17, intron 14 of 15) -12969 ENSMUSG00000081206.1 ENSMUSG00000081206 ENSMUST00000118608 Gm11935 processed_pseudogene Interval_166178 chr9 57278077 57278610 + 0 NA Intergenic Intergenic -16834 ENSMUSG00000032300.7 ENSMUSG00000032300 ENSMUST00000217657 1700017B05Rik protein_coding Interval_55717 chr14 99274933 99276174 + 0 NA Intergenic Intergenic 16083 ENSMUSG00000100172.1 ENSMUSG00000100172 ENSMUST00000186660 Gm4412 processed_pseudogene Interval_74631 chr17 53986990 53987201 + 0 NA intron (ENSMUSG00000023943.7, intron 1 of 7) protein_coding-intron (ENSMUSG00000023943.7, intron 1 of 7) 3579 ENSMUSG00000023943.7 ENSMUSG00000023943 ENSMUST00000024738 Sult1c1 protein_coding Interval_158405 chr8 83540825 83541896 + 0 NA exon (ENSMUSG00000047286.7, exon 1 of 1) protein_coding-exon (ENSMUSG00000047286.7, exon 1 of 1) -5080 ENSMUSG00000110478.1 ENSMUSG00000110478 ENSMUST00000212153 Gm18000 processed_pseudogene Interval_26882 chr11 61262373 61262930 + 0 NA promoter-TSS (ENSMUSG00000010025.19) protein_coding-promoter-TSS (ENSMUSG00000010025.19) -11641 ENSMUSG00000010025.19 ENSMUSG00000010025 ENSMUST00000149298 Aldh3a2 protein_coding Interval_6131 chr1 97780295 97781145 + 0 NA intron (ENSMUSG00000026333.14, intron 3 of 7) protein_coding-intron (ENSMUSG00000026333.14, intron 3 of 7) 3321 ENSMUSG00000026333.14 ENSMUSG00000026333 ENSMUST00000189031 Gin1 protein_coding Interval_23628 chr11 23956925 23957193 + 0 NA Intergenic Intergenic -28205 ENSMUSG00000084206.1 ENSMUSG00000084206 ENSMUST00000117533 Gm12062 processed_pseudogene Interval_96891 chr2 129244529 129248368 + 0 NA promoter-TSS (ENSMUSG00000085485.1) antisense-promoter-TSS (ENSMUSG00000085485.1) 72 ENSMUSG00000085485.1 ENSMUSG00000085485 ENSMUST00000141964 Gm14024 antisense Interval_69203 chr16 91314132 91314619 + 0 NA intron (ENSMUSG00000085865.2, intron 1 of 1) lincRNA-intron (ENSMUSG00000085865.2, intron 2 of 2) 14622 ENSMUSG00000085865.2 ENSMUSG00000085865 ENSMUST00000146994 Gm15966 lincRNA Interval_64184 chr16 8893756 8894870 + 0 NA Intergenic Intergenic -21142 ENSMUSG00000087982.1 ENSMUSG00000087982 ENSMUST00000157357 Gm22224 rRNA Interval_171642 chr9 119853925 119855188 + 0 NA Intergenic Intergenic -30696 ENSMUSG00000034115.10 ENSMUSG00000034115 ENSMUST00000070617 Scn11a protein_coding Interval_41319 chr12 112693046 112694108 + 0 NA promoter-TSS (ENSMUSG00000103898.1) TEC-promoter-TSS (ENSMUSG00000103898.1) 11 ENSMUSG00000103898.1 ENSMUSG00000103898 ENSMUST00000195528 Gm30238 TEC Interval_1281 chr1 19103661 19104914 + 0 NA intron (ENSMUSG00000042596.7, intron 1 of 7) protein_coding-intron (ENSMUSG00000042596.7, intron 1 of 7) 553 ENSMUSG00000089787.2 ENSMUSG00000089787 ENSMUST00000159108 Gm15825 antisense Interval_3108 chr1 53393676 53394638 + 0 NA Intergenic Intergenic 3742 ENSMUSG00000100069.1 ENSMUSG00000100069 ENSMUST00000190697 Gm6801 unprocessed_pseudogene Interval_25570 chr11 49846185 49847366 + 0 NA promoter-TSS (ENSMUSG00000020366.18) protein_coding-promoter-TSS (ENSMUSG00000020366.18) 24 ENSMUSG00000020366.18 ENSMUSG00000020366 ENSMUST00000043321 Mapk9 protein_coding Interval_171866 chr9 121872068 121872297 + 0 NA exon (ENSMUSG00000111465.1, exon 4 of 4) lincRNA-exon (ENSMUSG00000111465.1, exon 4 of 4) 2686 ENSMUSG00000111465.1 ENSMUSG00000111465 ENSMUST00000213591 Gm47113 lincRNA Interval_39025 chr12 84545859 84546568 + 0 NA TTS (ENSMUSG00000085793.2) protein_coding-TTS (ENSMUSG00000085793.2) 16169 ENSMUSG00000085793.2 ENSMUSG00000085793 ENSMUST00000222741 Lin52 protein_coding Interval_102407 chr3 24321614 24322451 + 0 NA intron (ENSMUSG00000102758.3, intron 5 of 13) protein_coding-intron (ENSMUSG00000102758.3, intron 5 of 13) -11036 ENSMUSG00000057036.7 ENSMUSG00000057036 ENSMUST00000077389 Gm7536 processed_pseudogene Interval_142755 chr6 145359855 145361734 + 0 NA Intergenic Intergenic -6064 ENSMUSG00000088362.1 ENSMUSG00000088362 ENSMUST00000157737 Gm23498 snoRNA Interval_66346 chr16 33288301 33288961 + 0 NA intron (ENSMUSG00000022808.5, intron 9 of 12) protein_coding-intron (ENSMUSG00000022808.5, intron 10 of 13) 37189 ENSMUSG00000022808.5 ENSMUSG00000022808 ENSMUST00000231242 Snx4 protein_coding Interval_73845 chr17 44511154 44512073 + 0 NA intron (ENSMUSG00000039153.17, intron 6 of 6) protein_coding-intron (ENSMUSG00000039153.17, intron 5 of 5) -50377 ENSMUSG00000090048.1 ENSMUSG00000090048 ENSMUST00000160203 Runx2os3 antisense Interval_120257 chr4 144981079 144981365 + 0 NA exon (ENSMUSG00000020220.16, exon 6 of 6) protein_coding-exon (ENSMUSG00000020220.16, exon 6 of 6) -22374 ENSMUSG00000103911.1 ENSMUSG00000103911 ENSMUST00000193467 Gm38074 TEC Interval_114827 chr4 85995547 85996294 + 0 NA intron (ENSMUSG00000066113.16, intron 2 of 3) protein_coding-intron (ENSMUSG00000066113.16, intron 2 of 3) 47574 ENSMUSG00000064687.1 ENSMUSG00000064687 ENSMUST00000082753 Gm25811 snRNA Interval_4571 chr1 75168198 75169403 + 0 NA promoter-TSS (ENSMUSG00000026197.12) protein_coding-promoter-TSS (ENSMUSG00000026197.12) -128 ENSMUSG00000026197.12 ENSMUSG00000026197 ENSMUST00000186227 Zfand2b protein_coding Interval_158928 chr8 88019381 88020391 + 0 NA Intergenic Intergenic 50924 ENSMUSG00000110719.1 ENSMUSG00000110719 ENSMUST00000212350 Gm2716 unitary_pseudogene Interval_67268 chr16 45145170 45145382 + 0 NA intron (ENSMUSG00000022664.11, intron 4 of 4) protein_coding-intron (ENSMUSG00000022664.11, intron 5 of 6) 13177 ENSMUSG00000022664.11 ENSMUSG00000022664 ENSMUST00000181377 Slc35a5 protein_coding Interval_11822 chr1 185829162 185830213 + 0 NA Intergenic Intergenic 49198 ENSMUSG00000102546.1 ENSMUSG00000102546 ENSMUST00000194568 Gm9722 processed_pseudogene Interval_133490 chr6 5725521 5726572 + 0 NA intron (ENSMUSG00000029757.16, intron 1 of 16) protein_coding-intron (ENSMUSG00000029757.16, intron 1 of 15) -31373 ENSMUSG00000029757.16 ENSMUSG00000029757 ENSMUST00000203520 Dync1i1 protein_coding Interval_67286 chr16 45467498 45467749 + 0 NA intron (ENSMUSG00000053182.11, intron 1 of 4) protein_coding-intron (ENSMUSG00000053182.11, intron 1 of 4) 25258 ENSMUSG00000053182.11 ENSMUSG00000053182 ENSMUST00000114585 Gm609 protein_coding Interval_82534 chr18 74990836 74991471 + 0 NA Intergenic Intergenic -7405 ENSMUSG00000062328.8 ENSMUSG00000062328 ENSMUST00000079716 Rpl17 protein_coding Interval_140498 chr6 118838488 118839935 + 0 NA intron (ENSMUSG00000051331.16, intron 3 of 47) protein_coding-intron (ENSMUSG00000051331.16, intron 3 of 46) 4311 ENSMUSG00000089115.1 ENSMUSG00000089115 ENSMUST00000158490 Gm25905 snRNA Interval_146037 chr7 43377662 43378902 + 0 NA Intergenic Intergenic 9662 ENSMUSG00000070606.4 ENSMUSG00000070606 ENSMUST00000074801 Gm10298 processed_pseudogene Interval_136354 chr6 53698246 53698822 + 0 NA exon (ENSMUSG00000053007.9, exon 11 of 11) protein_coding-exon (ENSMUSG00000053007.9, exon 11 of 11) 30764 ENSMUSG00000108004.1 ENSMUSG00000108004 ENSMUST00000204451 Gm44080 TEC Interval_108359 chr3 125625277 125625506 + 0 NA intron (ENSMUSG00000027971.16, intron 6 of 13) protein_coding-intron (ENSMUSG00000027971.16, intron 6 of 6) -84695 ENSMUSG00000027971.16 ENSMUSG00000027971 ENSMUST00000198101 Ndst4 protein_coding Interval_60498 chr15 74418827 74419012 + 0 NA intron (ENSMUSG00000118581.1, intron 2 of 4) unitary_pseudogene-intron (ENSMUSG00000118581.1, intron 2 of 4) 21525 ENSMUSG00000118581.1 ENSMUSG00000118581 ENSMUST00000239328 AC119183.1 unitary_pseudogene Interval_130256 chr5 125245323 125246368 + 0 NA intron (ENSMUSG00000105039.1, intron 2 of 3) lincRNA-intron (ENSMUSG00000105039.1, intron 2 of 3) 26970 ENSMUSG00000105039.1 ENSMUSG00000105039 ENSMUST00000198586 Gm32585 lincRNA Interval_137961 chr6 83750070 83750545 + 0 NA exon (ENSMUSG00000006269.7, exon 2 of 2) protein_coding-exon (ENSMUSG00000006269.7, exon 2 of 2) 7243 ENSMUSG00000006269.7 ENSMUSG00000006269 ENSMUST00000206052 Atp6v1b1 protein_coding Interval_152931 chr7 139864208 139864667 + 0 NA intron (ENSMUSG00000025475.17, intron 6 of 7) protein_coding-intron (ENSMUSG00000025475.17, intron 6 of 7) 23914 ENSMUSG00000109710.1 ENSMUSG00000109710 ENSMUST00000209974 Gm4974 processed_pseudogene Interval_123816 chr5 35717443 35718692 + 0 NA intron (ENSMUSG00000036553.16, intron 5 of 17) protein_coding-intron (ENSMUSG00000036553.16, intron 5 of 17) -4488 ENSMUSG00000087703.1 ENSMUSG00000087703 ENSMUST00000135451 Gm15650 antisense Interval_113471 chr4 55239402 55240769 + 0 NA intron (ENSMUSG00000087614.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000087614.1, intron 1 of 2) -14655 ENSMUSG00000081504.3 ENSMUSG00000081504 ENSMUST00000121282 Gm12508 processed_pseudogene Interval_153396 chr7 144409891 144410837 + 0 NA exon (ENSMUSG00000037541.22, exon 9 of 10) protein_coding-exon (ENSMUSG00000037541.22, exon 9 of 10) -3431 ENSMUSG00000085745.1 ENSMUSG00000085745 ENSMUST00000125355 Gm14372 antisense Interval_91035 chr2 34603794 34604114 + 0 NA intron (ENSMUSG00000038696.14, intron 10 of 11) protein_coding-intron (ENSMUSG00000038696.14, intron 9 of 10) 38955 ENSMUSG00000081992.1 ENSMUSG00000081992 ENSMUST00000119822 Gm13408 processed_pseudogene Interval_142765 chr6 145462918 145463134 + 0 NA intron (ENSMUSG00000054966.13, intron 2 of 10) protein_coding-intron (ENSMUSG00000054966.13, intron 2 of 10) -1163 ENSMUSG00000088781.1 ENSMUSG00000088781 ENSMUST00000158156 Gm25373 snoRNA Interval_10245 chr1 167497296 167498635 + 0 NA Intergenic Intergenic -31185 ENSMUSG00000040485.5 ENSMUSG00000040485 ENSMUST00000036643 Lrrc52 protein_coding Interval_25544 chr11 49685963 49686324 + 0 NA intron (ENSMUSG00000020362.13, intron 4 of 11) protein_coding-intron (ENSMUSG00000020362.13, intron 4 of 11) -3418 ENSMUSG00000020362.13 ENSMUSG00000020362 ENSMUST00000151090 Cnot6 protein_coding Interval_12705 chr10 4397304 4397676 + 0 NA Intergenic Intergenic 5903 ENSMUSG00000095123.1 ENSMUSG00000095123 ENSMUST00000178920 Gm21781 lincRNA Interval_147180 chr7 64165049 64165315 + 0 NA intron (ENSMUSG00000030523.18, intron 1 of 7) protein_coding-intron (ENSMUSG00000030523.18, intron 1 of 26) 37342 ENSMUSG00000108645.1 ENSMUSG00000108645 ENSMUST00000206473 Gm44722 TEC Interval_22429 chr11 9994792 9995133 + 0 NA Intergenic Intergenic -244375 ENSMUSG00000082312.1 ENSMUSG00000082312 ENSMUST00000117538 Gm11996 processed_pseudogene Interval_31253 chr11 99134669 99135308 + 0 NA Intergenic Intergenic 20089 ENSMUSG00000037944.8 ENSMUSG00000037944 ENSMUST00000103134 Ccr7 protein_coding Interval_3228 chr1 55012334 55012825 + 0 NA intron (ENSMUSG00000025982.13, intron 6 of 6) protein_coding-intron (ENSMUSG00000025982.13, intron 5 of 24) 14815 ENSMUSG00000025982.13 ENSMUSG00000025982 ENSMUST00000188419 Sf3b1 protein_coding Interval_22244 chr11 7989371 7989615 + 0 NA Intergenic Intergenic 6359 ENSMUSG00000084318.1 ENSMUSG00000084318 ENSMUST00000118524 Gm11987 unprocessed_pseudogene Interval_5257 chr1 87008101 87009069 + 0 NA intron (ENSMUSG00000053333.15, intron 14 of 20) protein_coding-intron (ENSMUSG00000053333.15, intron 13 of 20) 20315 ENSMUSG00000102956.1 ENSMUSG00000102956 ENSMUST00000195266 Gm37017 TEC Interval_160587 chr8 110883611 110883990 + 0 NA intron (ENSMUSG00000033703.9, intron 22 of 23) protein_coding-intron (ENSMUSG00000033703.9, intron 22 of 23) 18688 ENSMUSG00000033703.9 ENSMUSG00000033703 ENSMUST00000212568 Fcsk protein_coding Interval_20605 chr10 119352482 119352716 + 0 NA Intergenic Intergenic 10107 ENSMUSG00000112199.1 ENSMUSG00000112199 ENSMUST00000218187 Gm19090 processed_pseudogene Interval_58134 chr15 28323016 28323287 + 0 NA intron (ENSMUSG00000022262.8, intron 35 of 78) protein_coding-intron (ENSMUSG00000022262.8, intron 35 of 78) 119399 ENSMUSG00000022262.8 ENSMUSG00000022262 ENSMUST00000067048 Dnah5 protein_coding Interval_172080 chrX 6399556 6401772 + 0 NA intron (ENSMUSG00000068270.15, intron 1 of 8) protein_coding-intron (ENSMUSG00000068270.15, intron 1 of 8) -15078 ENSMUSG00000068270.15 ENSMUSG00000068270 ENSMUST00000089520 Shroom4 protein_coding Interval_159386 chr8 94224525 94224766 + 0 NA intron (ENSMUSG00000032939.14, intron 2 of 22) protein_coding-intron (ENSMUSG00000032939.14, intron 1 of 21) 1652 ENSMUSG00000110679.1 ENSMUSG00000110679 ENSMUST00000212707 Rpl10-ps5 processed_pseudogene Interval_39085 chr12 84941063 84941559 + 0 NA TTS (ENSMUSG00000042350.13) protein_coding-TTS (ENSMUSG00000042350.13) 5612 ENSMUSG00000042350.13 ENSMUSG00000042350 ENSMUST00000168713 Arel1 protein_coding Interval_133953 chr6 16384116 16384332 + 0 NA Intergenic Intergenic 85726 ENSMUSG00000108295.2 ENSMUSG00000108295 ENSMUST00000203052 Gm36406 processed_transcript Interval_135233 chr6 37686205 37687092 + 0 NA exon (ENSMUSG00000107035.1, exon 1 of 1) processed_pseudogene-exon (ENSMUSG00000107035.1, exon 1 of 1) 547 ENSMUSG00000107035.1 ENSMUSG00000107035 ENSMUST00000201305 Ybx1-ps2 processed_pseudogene Interval_108098 chr3 121480412 121481168 + 0 NA intron (ENSMUSG00000039865.8, intron 12 of 14) protein_coding-intron (ENSMUSG00000039865.8, intron 12 of 14) 23677 ENSMUSG00000053931.11 ENSMUSG00000053931 ENSMUST00000199499 Cnn3 protein_coding Interval_22276 chr11 8483530 8484269 + 0 NA intron (ENSMUSG00000020422.14, intron 17 of 30) protein_coding-intron (ENSMUSG00000020422.14, intron 17 of 30) -100046 ENSMUSG00000083553.1 ENSMUSG00000083553 ENSMUST00000117240 Gm11989 processed_pseudogene Interval_151764 chr7 126502002 126504020 + 0 NA promoter-TSS (ENSMUSG00000032637.15) protein_coding-promoter-TSS (ENSMUSG00000032637.15) 344 ENSMUSG00000032637.15 ENSMUSG00000032637 ENSMUST00000179818 Atxn2l protein_coding Interval_142613 chr6 144273145 144273968 + 0 NA intron (ENSMUSG00000041540.16, intron 4 of 6) protein_coding-intron (ENSMUSG00000041540.16, intron 4 of 13) -63988 ENSMUSG00000041540.16 ENSMUSG00000041540 ENSMUST00000150087 Sox5 protein_coding Interval_41016 chr12 110636507 110637682 + 0 NA intron (ENSMUSG00000018707.13, intron 32 of 76) protein_coding-intron (ENSMUSG00000018707.13, intron 32 of 76) -3430 ENSMUSG00000018707.13 ENSMUSG00000018707 ENSMUST00000166323 Dync1h1 protein_coding Interval_70926 chr17 16017175 16017511 + 0 NA Intergenic Intergenic -145808 ENSMUSG00000116839.1 ENSMUSG00000116839 ENSMUST00000232488 Gm49778 lincRNA Interval_36727 chr12 52610921 52612652 + 0 NA intron (ENSMUSG00000112412.1, intron 1 of 3) lincRNA-intron (ENSMUSG00000112412.1, intron 1 of 3) 4116 ENSMUSG00000112412.1 ENSMUSG00000112412 ENSMUST00000218346 Gm35239 lincRNA Interval_30750 chr11 96269830 96272905 + 0 NA promoter-TSS (ENSMUSG00000020875.9) protein_coding-promoter-TSS (ENSMUSG00000020875.9) -156 ENSMUSG00000020875.9 ENSMUSG00000020875 ENSMUST00000174042 Hoxb9 protein_coding Interval_10670 chr1 172586010 172586541 + 0 NA intron (ENSMUSG00000053318.7, intron 2 of 4) protein_coding-intron (ENSMUSG00000053318.7, intron 2 of 4) 4174 ENSMUSG00000053318.7 ENSMUSG00000053318 ENSMUST00000193843 Slamf8 protein_coding Interval_128467 chr5 113488874 113489071 + 0 NA Intergenic Intergenic -89816 ENSMUSG00000063430.9 ENSMUSG00000063430 ENSMUST00000198673 Wscd2 protein_coding Interval_104825 chr3 75551568 75551814 + 0 NA exon (ENSMUSG00000027835.11, exon 2 of 5) protein_coding-exon (ENSMUSG00000027835.11, exon 2 of 5) 5068 ENSMUSG00000027835.11 ENSMUSG00000027835 ENSMUST00000159217 Pdcd10 protein_coding Interval_60507 chr15 74529057 74531495 + 0 NA intron (ENSMUSG00000034730.17, intron 2 of 30) protein_coding-intron (ENSMUSG00000034730.17, intron 2 of 30) -33545 ENSMUSG00000093340.1 ENSMUSG00000093340 ENSMUST00000175599 Gm26117 miRNA Interval_59163 chr15 45689491 45690694 + 0 NA Intergenic Intergenic -272434 ENSMUSG00000115549.1 ENSMUSG00000115549 ENSMUST00000228018 Gm2203 processed_pseudogene Interval_106393 chr3 95881802 95883258 + 0 NA promoter-TSS (ENSMUSG00000038550.10) protein_coding-promoter-TSS (ENSMUSG00000038550.10) -456 ENSMUSG00000038550.10 ENSMUSG00000038550 ENSMUST00000161994 Ciart protein_coding Interval_837 chr1 12351292 12352097 + 0 NA Intergenic Intergenic -23242 ENSMUSG00000093864.1 ENSMUSG00000093864 ENSMUST00000179834 Gm22633 snRNA Interval_80838 chr18 48495516 48495888 + 0 NA Intergenic Intergenic -131002 ENSMUSG00000097965.1 ENSMUSG00000097965 ENSMUST00000182835 Gm5839 processed_pseudogene Interval_73227 chr17 35676842 35677952 + 0 NA Intergenic Intergenic -8637 ENSMUSG00000001524.14 ENSMUSG00000001524 ENSMUST00000159852 Gtf2h4 protein_coding Interval_102546 chr3 27663001 27663784 + 0 NA intron (ENSMUSG00000039286.12, intron 1 of 4) protein_coding-intron (ENSMUSG00000039286.12, intron 1 of 25) 47006 ENSMUSG00000039286.12 ENSMUSG00000039286 ENSMUST00000193779 Fndc3b protein_coding Interval_62594 chr15 95135952 95136346 + 0 NA intron (ENSMUSG00000100603.6, intron 3 of 3) sense_intronic-intron (ENSMUSG00000100603.6, intron 2 of 2) 26245 ENSMUSG00000100603.6 ENSMUSG00000100603 ENSMUST00000185302 1700129L04Rik sense_intronic Interval_161110 chr8 117526507 117526732 + 0 NA intron (ENSMUSG00000034330.10, intron 2 of 32) protein_coding-intron (ENSMUSG00000034330.10, intron 2 of 32) 20407 ENSMUSG00000092818.2 ENSMUSG00000092818 ENSMUST00000175077 Gm27361 miRNA Interval_66650 chr16 35867835 35868180 + 0 NA promoter-TSS (ENSMUSG00000116639.1) TEC-promoter-TSS (ENSMUSG00000116639.1) -56 ENSMUSG00000116639.1 ENSMUSG00000116639 ENSMUST00000231830 Gm49730 TEC Interval_6545 chr1 115704731 115704919 + 0 NA intron (ENSMUSG00000070695.4, intron 1 of 23) protein_coding-intron (ENSMUSG00000070695.4, intron 1 of 23) 20069 ENSMUSG00000070695.4 ENSMUSG00000070695 ENSMUST00000043725 Cntnap5a protein_coding Interval_20364 chr10 117126461 117126730 + 0 NA intron (ENSMUSG00000020170.4, intron 1 of 5) protein_coding-intron (ENSMUSG00000020170.4, intron 1 of 9) 21900 ENSMUSG00000020170.4 ENSMUSG00000020170 ENSMUST00000219104 Frs2 protein_coding Interval_12751 chr10 4774171 4774438 + 0 NA intron (ENSMUSG00000019768.16, intron 4 of 7) protein_coding-intron (ENSMUSG00000019768.16, intron 3 of 8) 162711 ENSMUSG00000019768.16 ENSMUSG00000019768 ENSMUST00000137012 Esr1 protein_coding Interval_116768 chr4 117181747 117183224 + 0 NA promoter-TSS (ENSMUSG00000028678.13) protein_coding-promoter-TSS (ENSMUSG00000028678.13) -3743 ENSMUSG00000028678.13 ENSMUSG00000028678 ENSMUST00000153953 Kif2c protein_coding Interval_19250 chr10 95772969 95774216 + 0 NA exon (ENSMUSG00000101517.6, exon 2 of 6) lincRNA-exon (ENSMUSG00000101517.6, exon 2 of 6) 27515 ENSMUSG00000101517.6 ENSMUSG00000101517 ENSMUST00000185499 4732465J04Rik lincRNA Interval_95384 chr2 107555459 107556432 + 0 NA Intergenic Intergenic 44594 ENSMUSG00000052005.8 ENSMUSG00000052005 ENSMUST00000090043 Gm9864 pseudogene Interval_10691 chr1 172970593 172971401 + 0 NA Intergenic Intergenic 20588 ENSMUSG00000037924.6 ENSMUSG00000037924 ENSMUST00000038432 Olfr16 protein_coding Interval_152654 chr7 135748763 135748969 + 0 NA intron (ENSMUSG00000109831.1, intron 1 of 3) lincRNA-intron (ENSMUSG00000109831.1, intron 1 of 3) 6190 ENSMUSG00000109831.1 ENSMUSG00000109831 ENSMUST00000209706 Gm36431 lincRNA Interval_113640 chr4 57202149 57203152 + 0 NA intron (ENSMUSG00000038764.14, intron 22 of 25) protein_coding-intron (ENSMUSG00000038764.14, intron 22 of 25) 30579 ENSMUSG00000085967.1 ENSMUSG00000085967 ENSMUST00000152074 Gm12530 antisense Interval_15558 chr10 51417320 51418754 + 0 NA Intergenic Intergenic -37943 ENSMUSG00000112212.1 ENSMUSG00000112212 ENSMUST00000219395 Gm46189 lincRNA Interval_53453 chr14 57611270 57611805 + 0 NA intron (ENSMUSG00000021952.16, intron 9 of 22) protein_coding-intron (ENSMUSG00000021952.16, intron 9 of 22) 39923 ENSMUSG00000097933.2 ENSMUSG00000097933 ENSMUST00000180397 1700039M10Rik bidirectional_promoter_lncRNA Interval_89808 chr2 25579235 25580388 + 0 NA promoter-TSS (ENSMUSG00000029419.8) protein_coding-promoter-TSS (ENSMUSG00000029419.8) 1946 ENSMUSG00000029419.8 ENSMUSG00000029419 ENSMUST00000187017 Ajm1 protein_coding Interval_107624 chr3 108961395 108961740 + 0 NA TTS (ENSMUSG00000045662.17) protein_coding-TTS (ENSMUSG00000045662.17) -21121 ENSMUSG00000051638.2 ENSMUSG00000051638 ENSMUST00000050914 Gm9857 antisense Interval_34419 chr12 3981041 3982100 + 0 NA intron (ENSMUSG00000020658.10, intron 1 of 3) protein_coding-intron (ENSMUSG00000020658.10, intron 10 of 22) 278 ENSMUSG00000020658.10 ENSMUSG00000020658 ENSMUST00000218545 Efr3b protein_coding Interval_36432 chr12 44525042 44525659 + 0 NA intron (ENSMUSG00000020598.16, intron 3 of 24) protein_coding-intron (ENSMUSG00000020598.16, intron 3 of 30) 97312 ENSMUSG00000112823.1 ENSMUSG00000112823 ENSMUST00000217983 Gm6125 processed_pseudogene Interval_84750 chr19 16198420 16198930 + 0 NA intron (ENSMUSG00000024639.5, intron 1 of 2) protein_coding-intron (ENSMUSG00000024639.5, intron 1 of 6) -33870 ENSMUSG00000057990.4 ENSMUSG00000057990 ENSMUST00000075293 E030024N20Rik processed_pseudogene Interval_152009 chr7 128236970 128239117 + 0 NA promoter-TSS (ENSMUSG00000062944.4) protein_coding-promoter-TSS (ENSMUSG00000062944.4) -12 ENSMUSG00000062944.4 ENSMUSG00000062944 ENSMUST00000078816 9130023H24Rik protein_coding Interval_155241 chr8 28587234 28587747 + 0 NA Intergenic Intergenic -6042 ENSMUSG00000097776.1 ENSMUSG00000097776 ENSMUST00000181267 Gm26795 lincRNA Interval_134277 chr6 24407924 24408163 + 0 NA Intergenic Intergenic 107024 ENSMUSG00000046192.4 ENSMUSG00000046192 ENSMUST00000052277 Iqub protein_coding Interval_114248 chr4 70028154 70028583 + 0 NA Intergenic Intergenic -18789 ENSMUSG00000082368.1 ENSMUSG00000082368 ENSMUST00000118903 Gm11225 processed_pseudogene Interval_20736 chr10 120646135 120647906 + 0 NA intron (ENSMUSG00000112716.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000112716.1, intron 1 of 2) 19997 ENSMUSG00000103213.1 ENSMUSG00000103213 ENSMUST00000194273 Gm38289 TEC Interval_119530 chr4 138167867 138169162 + 0 NA intron (ENSMUSG00000028760.16, intron 17 of 33) protein_coding-intron (ENSMUSG00000028760.16, intron 18 of 34) 5305 ENSMUSG00000098513.1 ENSMUSG00000098513 ENSMUST00000184050 Mir6399 miRNA Interval_87622 chr19 53779542 53780030 + 0 NA intron (ENSMUSG00000043639.15, intron 1 of 13) protein_coding-intron (ENSMUSG00000043639.15, intron 1 of 13) -11476 ENSMUSG00000089807.1 ENSMUSG00000089807 ENSMUST00000161107 Gm16298 processed_pseudogene Interval_72328 chr17 29231598 29232266 + 0 NA intron (ENSMUSG00000024008.16, intron 1 of 13) protein_coding-intron (ENSMUSG00000024008.16, intron 1 of 20) 8636 ENSMUSG00000117610.1 ENSMUSG00000117610 ENSMUST00000235091 Gm50054 TEC Interval_171384 chr9 117209724 117209907 + 0 NA intron (ENSMUSG00000039607.17, intron 1 of 13) protein_coding-intron (ENSMUSG00000039607.17, intron 1 of 12) -42721 ENSMUSG00000079669.2 ENSMUSG00000079669 ENSMUST00000172075 Gm17396 processed_transcript Interval_28546 chr11 76647197 76647884 + 0 NA Intergenic Intergenic -23982 ENSMUSG00000017631.19 ENSMUSG00000017631 ENSMUST00000137261 Abr protein_coding Interval_161296 chr8 119590210 119590554 + 0 NA intron (ENSMUSG00000031831.6, intron 6 of 11) protein_coding-intron (ENSMUSG00000031831.6, intron 6 of 11) 12243 ENSMUSG00000081378.1 ENSMUSG00000081378 ENSMUST00000117927 Rps13-ps4 processed_pseudogene Interval_157015 chr8 64453898 64454157 + 0 NA Intergenic Intergenic -36927 ENSMUSG00000109579.1 ENSMUSG00000109579 ENSMUST00000211285 Gm35521 lincRNA Interval_158198 chr8 79727912 79728291 + 0 NA intron (ENSMUSG00000036977.8, intron 3 of 4) protein_coding-intron (ENSMUSG00000036977.8, intron 3 of 4) 16250 ENSMUSG00000036977.8 ENSMUSG00000036977 ENSMUST00000210485 Anapc10 protein_coding Interval_98387 chr2 151999776 152000116 + 0 NA promoter-TSS (ENSMUSG00000027463.14) protein_coding-promoter-TSS (ENSMUSG00000027463.14) 81 ENSMUSG00000027463.14 ENSMUSG00000027463 ENSMUST00000109858 Slc52a3 protein_coding Interval_12142 chr1 190061570 190061923 + 0 NA Intergenic Intergenic -106924 ENSMUSG00000099404.1 ENSMUSG00000099404 ENSMUST00000189880 Gm28172 antisense Interval_17896 chr10 80655964 80657275 + 0 NA promoter-TSS (ENSMUSG00000003344.14) protein_coding-promoter-TSS (ENSMUSG00000003344.14) -8909 ENSMUSG00000003344.14 ENSMUSG00000003344 ENSMUST00000131876 Btbd2 protein_coding Interval_122542 chr5 23700155 23700384 + 0 NA promoter-TSS (ENSMUSG00000105987.4) processed_transcript-promoter-TSS (ENSMUSG00000105987.4) 10792 ENSMUSG00000096832.1 ENSMUSG00000096832 ENSMUST00000116685 Gm50451 snoRNA Interval_24880 chr11 40718073 40718589 + 0 NA intron (ENSMUSG00000020330.16, intron 7 of 17) protein_coding-intron (ENSMUSG00000020330.16, intron 7 of 17) 15085 ENSMUSG00000020330.16 ENSMUSG00000020330 ENSMUST00000152749 Hmmr protein_coding Interval_87463 chr19 52366691 52367143 + 0 NA Intergenic Intergenic 29752 ENSMUSG00000118114.1 ENSMUSG00000118114 ENSMUST00000236031 Gm50332 lincRNA Interval_152508 chr7 133672724 133673233 + 0 NA TTS (ENSMUSG00000039990.16) protein_coding-TTS (ENSMUSG00000039990.16) 7083 ENSMUSG00000030981.9 ENSMUSG00000030981 ENSMUST00000122136 Mmp21 protein_coding Interval_57462 chr15 11390809 11392788 + 0 NA exon (ENSMUSG00000022241.6, exon 3 of 3) protein_coding-exon (ENSMUSG00000022241.6, exon 3 of 3) 7803 ENSMUSG00000022241.6 ENSMUSG00000022241 ENSMUST00000226904 Tars protein_coding Interval_127604 chr5 105731415 105732786 + 0 NA promoter-TSS (ENSMUSG00000046079.16) protein_coding-promoter-TSS (ENSMUSG00000046079.16) 711 ENSMUSG00000046079.16 ENSMUSG00000046079 ENSMUST00000134605 Lrrc8d protein_coding Interval_38300 chr12 76989377 76989602 + 0 NA intron (ENSMUSG00000112857.1, intron 2 of 3) lincRNA-intron (ENSMUSG00000112857.1, intron 2 of 3) 17029 ENSMUSG00000112857.1 ENSMUSG00000112857 ENSMUST00000219581 Gm35041 lincRNA Interval_90470 chr2 30660448 30660973 + 0 NA intron (ENSMUSG00000087268.1, intron 2 of 3) lincRNA-intron (ENSMUSG00000087268.1, intron 2 of 3) 9198 ENSMUSG00000087268.1 ENSMUSG00000087268 ENSMUST00000144704 Gm14486 lincRNA Interval_35836 chr12 31073580 31075545 + 0 NA exon (ENSMUSG00000036136.9, exon 1 of 2) protein_coding-exon (ENSMUSG00000036136.9, exon 1 of 2) 701 ENSMUSG00000036136.9 ENSMUSG00000036136 ENSMUST00000041133 Fam110c protein_coding Interval_174367 chrX 150458359 150459731 + 0 NA exon (ENSMUSG00000041353.12, exon 1 of 3) protein_coding-exon (ENSMUSG00000041353.12, exon 1 of 3) 105 ENSMUSG00000041353.12 ENSMUSG00000041353 ENSMUST00000134601 Tmem29 protein_coding Interval_131224 chr5 135901440 135901910 + 0 NA Intergenic Intergenic -5189 ENSMUSG00000105047.1 ENSMUSG00000105047 ENSMUST00000196247 Gm42533 processed_pseudogene Interval_158046 chr8 78290030 78291161 + 0 NA intron (ENSMUSG00000037101.16, intron 6 of 10) protein_coding-intron (ENSMUSG00000037101.16, intron 9 of 13) 77245 ENSMUSG00000037101.16 ENSMUSG00000037101 ENSMUST00000124713 Ttc29 protein_coding Interval_167085 chr9 65162583 65163611 + 0 NA intron (ENSMUSG00000032394.6, intron 2 of 13) protein_coding-intron (ENSMUSG00000032394.6, intron 2 of 13) 21885 ENSMUSG00000032394.6 ENSMUSG00000032394 ENSMUST00000217135 Igdcc3 protein_coding Interval_96615 chr2 126540276 126540748 + 0 NA Intergenic Intergenic -24248 ENSMUSG00000027359.16 ENSMUSG00000027359 ENSMUST00000150947 Slc27a2 protein_coding Interval_109587 chr3 144737960 144738975 + 0 NA intron (ENSMUSG00000056025.12, intron 11 of 13) protein_coding-intron (ENSMUSG00000056025.12, intron 10 of 12) 10583 ENSMUSG00000106089.1 ENSMUSG00000106089 ENSMUST00000200672 Gm9419 processed_pseudogene Interval_14552 chr10 35427836 35429109 + 0 NA Intergenic Intergenic 56924 ENSMUSG00000111753.1 ENSMUSG00000111753 ENSMUST00000214107 1700054O05Rik lincRNA Interval_84859 chr19 17686069 17686306 + 0 NA intron (ENSMUSG00000024713.16, intron 5 of 7) protein_coding-intron (ENSMUSG00000024713.16, intron 5 of 37) -6576 ENSMUSG00000118270.1 ENSMUSG00000118270 ENSMUST00000237894 Gm17819 processed_pseudogene Interval_112774 chr4 44905731 44906670 + 0 NA intron (ENSMUSG00000035649.17, intron 5 of 5) protein_coding-intron (ENSMUSG00000035649.17, intron 5 of 5) -37553 ENSMUSG00000084854.1 ENSMUSG00000084854 ENSMUST00000154177 Gm12678 lincRNA Interval_83473 chr18 86456996 86457454 + 0 NA intron (ENSMUSG00000050321.3, intron 4 of 10) protein_coding-intron (ENSMUSG00000050321.3, intron 4 of 10) 16704 ENSMUSG00000117778.1 ENSMUSG00000117778 ENSMUST00000236142 Gm50384 antisense Interval_65837 chr16 29707717 29708243 + 0 NA Intergenic Intergenic 46332 ENSMUSG00000116814.1 ENSMUSG00000116814 ENSMUST00000232037 Gm49636 lincRNA Interval_9405 chr1 156854187 156854401 + 0 NA intron (ENSMUSG00000033544.6, intron 2 of 4) protein_coding-intron (ENSMUSG00000033544.6, intron 2 of 4) 4565 ENSMUSG00000103303.1 ENSMUSG00000103303 ENSMUST00000194998 Gm37802 TEC Interval_165654 chr9 50708995 50709398 + 0 NA TTS (ENSMUSG00000032064.17) protein_coding-TTS (ENSMUSG00000032064.17) -11425 ENSMUSG00000032064.17 ENSMUSG00000032064 ENSMUST00000118707 Dixdc1 protein_coding Interval_154174 chr8 13208618 13209602 + 0 NA Intergenic Intergenic 8390 ENSMUSG00000099338.1 ENSMUSG00000099338 ENSMUST00000187595 2810030D12Rik bidirectional_promoter_lncRNA Interval_156152 chr8 45186349 45187031 + 0 NA promoter-TSS (ENSMUSG00000110260.1) lincRNA-promoter-TSS (ENSMUSG00000110260.1) -51 ENSMUSG00000110260.1 ENSMUSG00000110260 ENSMUST00000209762 Gm30504 lincRNA Interval_28638 chr11 77488834 77490123 + 0 NA exon (ENSMUSG00000037907.16, exon 1 of 15) protein_coding-exon (ENSMUSG00000037907.16, exon 1 of 15) -9613 ENSMUSG00000011877.13 ENSMUSG00000011877 ENSMUST00000128796 Git1 protein_coding Interval_57507 chr15 11939259 11939869 + 0 NA Intergenic Intergenic -25766 ENSMUSG00000088803.1 ENSMUSG00000088803 ENSMUST00000158178 Gm24074 misc_RNA Interval_166221 chr9 57575507 57575996 + 0 NA intron (ENSMUSG00000040188.10, intron 1 of 2) protein_coding-intron (ENSMUSG00000040188.10, intron 1 of 8) -6099 ENSMUSG00000040188.10 ENSMUSG00000040188 ENSMUST00000216667 Scamp2 protein_coding Interval_131208 chr5 135814627 135815069 + 0 NA intron (ENSMUSG00000039860.19, intron 1 of 2) protein_coding-intron (ENSMUSG00000039860.19, intron 1 of 3) 22524 ENSMUSG00000094486.1 ENSMUSG00000094486 ENSMUST00000175494 Gm23268 miRNA Interval_51453 chr14 27669605 27670720 + 0 NA intron (ENSMUSG00000040640.11, intron 1 of 15) protein_coding-intron (ENSMUSG00000040640.11, intron 2 of 15) -44215 ENSMUSG00000114653.1 ENSMUSG00000114653 ENSMUST00000224481 Gm18398 processed_pseudogene Interval_42869 chr13 20821880 20822178 + 0 NA intron (ENSMUSG00000021322.8, intron 2 of 4) protein_coding-intron (ENSMUSG00000021322.8, intron 2 of 20) -5807 ENSMUSG00000114070.1 ENSMUSG00000114070 ENSMUST00000221287 Gm47727 processed_pseudogene Interval_168337 chr9 78859261 78859516 + 0 NA Intergenic Intergenic -37550 ENSMUSG00000059422.5 ENSMUSG00000059422 ENSMUST00000182917 Gm8116 processed_pseudogene Interval_11439 chr1 181941256 181941468 + 0 NA promoter-TSS (ENSMUSG00000022995.16) protein_coding-promoter-TSS (ENSMUSG00000022995.16) 12013 ENSMUSG00000103722.1 ENSMUSG00000103722 ENSMUST00000194331 2700078F05Rik TEC Interval_76037 chr17 74511068 74511518 + 0 NA Intergenic Intergenic 16351 ENSMUSG00000117358.1 ENSMUSG00000117358 ENSMUST00000234285 Gm31645 processed_transcript Interval_151509 chr7 123170769 123171175 + 0 NA promoter-TSS (ENSMUSG00000052707.8) protein_coding-promoter-TSS (ENSMUSG00000052707.8) -674 ENSMUSG00000052707.8 ENSMUSG00000052707 ENSMUST00000206126 Tnrc6a protein_coding Interval_82291 chr18 70261727 70262382 + 0 NA Intergenic Intergenic 14246 ENSMUSG00000118497.1 ENSMUSG00000118497 ENSMUST00000239144 AC124764.1 protein_coding Interval_130336 chr5 125963376 125964537 + 0 NA intron (ENSMUSG00000105593.4, intron 1 of 2) lincRNA-intron (ENSMUSG00000105593.4, intron 1 of 2) -1594 ENSMUSG00000106378.1 ENSMUSG00000106378 ENSMUST00000196825 Gm42945 lincRNA Interval_150410 chr7 110221194 110222329 + 0 NA promoter-TSS (ENSMUSG00000031015.8) protein_coding-promoter-TSS (ENSMUSG00000031015.8) 29 ENSMUSG00000031015.8 ENSMUSG00000031015 ENSMUST00000210513 Swap70 protein_coding Interval_94201 chr2 85050390 85051194 + 0 NA promoter-TSS (ENSMUSG00000033955.13) protein_coding-promoter-TSS (ENSMUSG00000033955.13) -10172 ENSMUSG00000033955.13 ENSMUSG00000033955 ENSMUST00000238769 Tnks1bp1 protein_coding Interval_11449 chr1 181979295 181979742 + 0 NA intron (ENSMUSG00000022995.16, intron 1 of 13) protein_coding-intron (ENSMUSG00000022995.16, intron 1 of 14) -9595 ENSMUSG00000103317.1 ENSMUSG00000103317 ENSMUST00000191884 Gm38359 TEC Interval_69368 chr16 92507435 92509070 + 0 NA intron (ENSMUSG00000022949.9, intron 1 of 5) protein_coding-intron (ENSMUSG00000022949.9, intron 1 of 5) 22516 ENSMUSG00000022949.9 ENSMUSG00000022949 ENSMUST00000023670 Clic6 protein_coding Interval_145652 chr7 36765739 36766465 + 0 NA intron (ENSMUSG00000021217.7, intron 1 of 1) protein_coding-intron (ENSMUSG00000021217.7, intron 1 of 1) -14629 ENSMUSG00000089273.1 ENSMUSG00000089273 ENSMUST00000158648 Gm24550 misc_RNA Interval_10337 chr1 169542383 169542653 + 0 NA Intergenic Intergenic -20136 ENSMUSG00000026683.14 ENSMUSG00000026683 ENSMUST00000194831 Nuf2 protein_coding Interval_155475 chr8 33818222 33819019 + 0 NA intron (ENSMUSG00000097442.1, intron 1 of 1) protein_coding-intron (ENSMUSG00000031586.17, intron 5 of 7) 5417 ENSMUSG00000097442.1 ENSMUSG00000097442 ENSMUST00000181120 Gm26632 antisense Interval_30173 chr11 90130231 90130988 + 0 NA Intergenic Intergenic 13015 ENSMUSG00000085074.1 ENSMUSG00000085074 ENSMUST00000142279 Gm11494 lincRNA Interval_82677 chr18 75857890 75859128 + 0 NA intron (ENSMUSG00000044646.15, intron 1 of 5) protein_coding-intron (ENSMUSG00000044646.15, intron 1 of 4) 38294 ENSMUSG00000044646.15 ENSMUSG00000044646 ENSMUST00000167921 Zbtb7c protein_coding Interval_19708 chr10 108226671 108227905 + 0 NA intron (ENSMUSG00000019907.10, intron 3 of 24) protein_coding-intron (ENSMUSG00000019907.10, intron 3 of 25) -22306 ENSMUSG00000019907.10 ENSMUSG00000019907 ENSMUST00000219559 Ppp1r12a protein_coding Interval_35335 chr12 20791503 20791691 + 0 NA Intergenic Intergenic 13111 ENSMUSG00000101813.1 ENSMUSG00000101813 ENSMUST00000185966 Gm28503 transcribed_processed_pseudogene Interval_71961 chr17 27240191 27241515 + 0 NA intron (ENSMUSG00000117916.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000117916.1, intron 1 of 1) -4001 ENSMUSG00000117794.1 ENSMUSG00000117794 ENSMUST00000236878 Gm50328 lincRNA Interval_158420 chr8 83622267 83622721 + 0 NA Intergenic Intergenic 13941 ENSMUSG00000005483.10 ENSMUSG00000005483 ENSMUST00000212300 Dnajb1 protein_coding Interval_154156 chr8 13104453 13106534 + 0 NA promoter-TSS (ENSMUSG00000031446.14) protein_coding-promoter-TSS (ENSMUSG00000031446.14) -672 ENSMUSG00000038542.14 ENSMUSG00000038542 ENSMUST00000172443 Pcid2 protein_coding Interval_36886 chr12 54964509 54965239 + 0 NA TTS (ENSMUSG00000098026.2) processed_pseudogene-TTS (ENSMUSG00000098026.2) 1810 ENSMUSG00000098026.2 ENSMUSG00000098026 ENSMUST00000182658 Gm27014 processed_pseudogene Interval_98916 chr2 155991791 155991999 + 0 NA exon (ENSMUSG00000038241.16, exon 28 of 33) protein_coding-exon (ENSMUSG00000038241.16, exon 28 of 33) 6012 ENSMUSG00000038241.16 ENSMUSG00000038241 ENSMUST00000128683 Cep250 protein_coding Interval_146210 chr7 44707376 44709487 + 0 NA promoter-TSS (ENSMUSG00000066500.5) protein_coding-promoter-TSS (ENSMUSG00000066500.5) -311 ENSMUSG00000066500.5 ENSMUSG00000066500 ENSMUST00000207182 Izumo2 protein_coding Interval_14324 chr10 30881050 30881564 + 0 NA TTS (ENSMUSG00000110918.1) processed_pseudogene-TTS (ENSMUSG00000110918.1) 790 ENSMUSG00000110918.1 ENSMUSG00000110918 ENSMUST00000215584 Gm48862 processed_pseudogene Interval_139532 chr6 100839002 100839517 + 0 NA intron (ENSMUSG00000052144.8, intron 2 of 8) protein_coding-intron (ENSMUSG00000052144.8, intron 2 of 8) -13226 ENSMUSG00000052144.8 ENSMUSG00000052144 ENSMUST00000203067 Ppp4r2 protein_coding Interval_36967 chr12 55745077 55745556 + 0 NA intron (ENSMUSG00000021027.17, intron 13 of 39) protein_coding-intron (ENSMUSG00000021027.17, intron 13 of 40) 71211 ENSMUSG00000112393.1 ENSMUSG00000112393 ENSMUST00000217762 Gm48655 TEC Interval_159497 chr8 95091814 95092026 + 0 NA intron (ENSMUSG00000031787.8, intron 3 of 16) protein_coding-intron (ENSMUSG00000031787.8, intron 4 of 19) -1244 ENSMUSG00000110516.1 ENSMUSG00000110516 ENSMUST00000212448 Gm45758 TEC Interval_125781 chr5 74105747 74105962 + 0 NA Intergenic Intergenic 12324 ENSMUSG00000093355.1 ENSMUSG00000093355 ENSMUST00000175614 Snora26 snoRNA Interval_106712 chr3 99287905 99288726 + 0 NA intron (ENSMUSG00000027868.11, intron 1 of 7) protein_coding-intron (ENSMUSG00000027868.11, intron 1 of 7) -27030 ENSMUSG00000105689.1 ENSMUSG00000105689 ENSMUST00000196228 Gm43120 antisense Interval_31518 chr11 101131708 101132901 + 0 NA Intergenic Intergenic 7804 ENSMUSG00000035198.9 ENSMUSG00000035198 ENSMUST00000137844 Tubg1 protein_coding Interval_71714 chr17 25643334 25644076 + 0 NA intron (ENSMUSG00000002279.19, intron 5 of 6) protein_coding-intron (ENSMUSG00000002279.19, intron 5 of 10) 50515 ENSMUSG00000096451.1 ENSMUSG00000096451 ENSMUST00000180010 Gm22645 snRNA Interval_111958 chr4 32833612 32834557 + 0 NA intron (ENSMUSG00000040183.13, intron 2 of 3) protein_coding-intron (ENSMUSG00000040183.13, intron 4 of 16) 26599 ENSMUSG00000040183.13 ENSMUSG00000040183 ENSMUST00000149650 Ankrd6 protein_coding Interval_123704 chr5 34619999 34621054 + 0 NA TTS (ENSMUSG00000029106.14) protein_coding-TTS (ENSMUSG00000029106.14) 3759 ENSMUSG00000029106.14 ENSMUSG00000029106 ENSMUST00000139044 Add1 protein_coding Interval_3674 chr1 60625908 60626782 + 0 NA Intergenic Intergenic -12542 ENSMUSG00000088973.1 ENSMUSG00000088973 ENSMUST00000158348 Gm23762 miRNA Interval_16331 chr10 62282635 62284096 + 0 NA intron (ENSMUSG00000037012.18, intron 12 of 17) protein_coding-intron (ENSMUSG00000037012.18, intron 14 of 19) 6964 ENSMUSG00000037012.18 ENSMUSG00000037012 ENSMUST00000149534 Hk1 protein_coding Interval_140635 chr6 120235935 120236724 + 0 NA intron (ENSMUSG00000041372.10, intron 1 of 19) protein_coding-intron (ENSMUSG00000041372.10, intron 1 of 19) 58230 ENSMUSG00000041372.10 ENSMUSG00000041372 ENSMUST00000212457 B4galnt3 protein_coding Interval_26103 chr11 54263362 54264997 + 0 NA Intergenic Intergenic 3098 ENSMUSG00000018914.5 ENSMUSG00000018914 ENSMUST00000019058 Il3 protein_coding Interval_142757 chr6 145367833 145368118 + 0 NA intron (ENSMUSG00000054966.13, intron 10 of 10) protein_coding-intron (ENSMUSG00000054966.13, intron 10 of 10) 1117 ENSMUSG00000088362.1 ENSMUSG00000088362 ENSMUST00000157737 Gm23498 snoRNA Interval_24956 chr11 42006971 42007246 + 0 NA Intergenic Intergenic -90485 ENSMUSG00000020436.17 ENSMUSG00000020436 ENSMUST00000109290 Gabrg2 protein_coding Interval_174598 chrX 159602221 159602932 + 0 NA Intergenic Intergenic 14111 ENSMUSG00000083906.1 ENSMUSG00000083906 ENSMUST00000119345 Gm15186 processed_pseudogene Interval_86673 chr19 42458450 42458907 + 0 NA Intergenic Intergenic -26893 ENSMUSG00000042401.8 ENSMUSG00000042401 ENSMUST00000238182 Crtac1 protein_coding Interval_78446 chr18 12896152 12896623 + 0 NA intron (ENSMUSG00000044252.18, intron 12 of 14) protein_coding-intron (ENSMUSG00000044252.18, intron 12 of 27) -2040 ENSMUSG00000080866.1 ENSMUSG00000080866 ENSMUST00000118252 Gm5687 processed_pseudogene Interval_173856 chrX 106011334 106012473 + 0 NA promoter-TSS (ENSMUSG00000031232.17) protein_coding-promoter-TSS (ENSMUSG00000031232.17) -4 ENSMUSG00000031232.17 ENSMUSG00000031232 ENSMUST00000139421 Magt1 protein_coding Interval_144860 chr7 28646809 28647583 + 0 NA intron (ENSMUSG00000108905.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000108905.1, intron 1 of 1) 4809 ENSMUSG00000108865.1 ENSMUSG00000108865 ENSMUST00000209122 Gm44617 processed_transcript Interval_43045 chr13 23463460 23467371 + 0 NA promoter-TSS (ENSMUSG00000000706.16) protein_coding-promoter-TSS (ENSMUSG00000000706.16) -6 ENSMUSG00000000706.16 ENSMUSG00000000706 ENSMUST00000225831 Btn1a1 protein_coding Interval_49779 chr13 114987242 114987828 + 0 NA intron (ENSMUSG00000042284.10, intron 16 of 18) protein_coding-intron (ENSMUSG00000042284.10, intron 16 of 28) -52467 ENSMUSG00000114703.1 ENSMUSG00000114703 ENSMUST00000225140 Gm47776 processed_pseudogene Interval_38585 chr12 80283748 80286216 + 0 NA Intergenic Intergenic 25539 ENSMUSG00000112336.1 ENSMUSG00000112336 ENSMUST00000218666 Gm47766 antisense Interval_153307 chr7 143498525 143498987 + 0 NA intron (ENSMUSG00000000154.16, intron 9 of 9) protein_coding-intron (ENSMUSG00000000154.16, intron 10 of 10) 4394 ENSMUSG00000010760.5 ENSMUSG00000010760 ENSMUST00000207561 Phlda2 protein_coding Interval_102617 chr3 28541360 28541549 + 0 NA intron (ENSMUSG00000027692.16, intron 6 of 30) protein_coding-intron (ENSMUSG00000027692.16, intron 6 of 30) 121511 ENSMUSG00000092990.1 ENSMUSG00000092990 ENSMUST00000175249 Mir466q miRNA Interval_122730 chr5 24933607 24934005 + 0 NA intron (ENSMUSG00000028944.14, intron 2 of 13) protein_coding-intron (ENSMUSG00000028944.14, intron 4 of 15) -25297 ENSMUSG00000028944.14 ENSMUSG00000028944 ENSMUST00000148531 Prkag2 protein_coding Interval_92165 chr2 55101394 55102061 + 0 NA intron (ENSMUSG00000060988.12, intron 11 of 11) protein_coding-intron (ENSMUSG00000060988.12, intron 10 of 10) 97742 ENSMUSG00000089352.1 ENSMUSG00000089352 ENSMUST00000158727 Gm25489 snRNA Interval_79355 chr18 31055866 31056231 + 0 NA intron (ENSMUSG00000057455.12, intron 4 of 4) protein_coding-intron (ENSMUSG00000057455.12, intron 3 of 3) 156684 ENSMUSG00000057455.12 ENSMUSG00000057455 ENSMUST00000139924 Rit2 protein_coding Interval_24187 chr11 31089713 31090887 + 0 NA intron (ENSMUSG00000020305.13, intron 9 of 9) protein_coding-intron (ENSMUSG00000020305.13, intron 9 of 9) -29703 ENSMUSG00000082049.1 ENSMUSG00000082049 ENSMUST00000120846 Gm12105 processed_pseudogene Interval_93367 chr2 72446531 72446987 + 0 NA Intergenic Intergenic -29494 ENSMUSG00000055612.15 ENSMUSG00000055612 ENSMUST00000137880 Cdca7 protein_coding Interval_155553 chr8 34353361 34353718 + 0 NA intron (ENSMUSG00000109964.1, intron 3 of 4) lincRNA-intron (ENSMUSG00000109964.1, intron 3 of 4) 9303 ENSMUSG00000109964.1 ENSMUSG00000109964 ENSMUST00000210560 Gm45350 lincRNA Interval_173855 chrX 105981407 105982157 + 0 NA intron (ENSMUSG00000031232.17, intron 7 of 9) protein_coding-intron (ENSMUSG00000031232.17, intron 7 of 10) 30117 ENSMUSG00000031232.17 ENSMUSG00000031232 ENSMUST00000139421 Magt1 protein_coding Interval_14070 chr10 26493895 26494874 + 0 NA intron (ENSMUSG00000112797.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000112797.1, intron 1 of 2) 1286 ENSMUSG00000112797.1 ENSMUSG00000112797 ENSMUST00000219589 Gm30034 lincRNA Interval_167156 chr9 65682189 65682890 + 0 NA intron (ENSMUSG00000040652.16, intron 1 of 5) protein_coding-intron (ENSMUSG00000040652.16, intron 1 of 5) 12827 ENSMUSG00000040652.16 ENSMUSG00000040652 ENSMUST00000128664 Oaz2 protein_coding Interval_130984 chr5 134402021 134402444 + 0 NA promoter-TSS (ENSMUSG00000023079.14) protein_coding-promoter-TSS (ENSMUSG00000023079.14) -14007 ENSMUSG00000077437.1 ENSMUSG00000077437 ENSMUST00000104249 n-R5s178 rRNA Interval_141510 chr6 128798500 128799996 + 0 NA intron (ENSMUSG00000107872.2, intron 3 of 5) protein_coding-intron (ENSMUSG00000107872.2, intron 3 of 5) -10033 ENSMUSG00000030325.16 ENSMUSG00000030325 ENSMUST00000174865 Klrb1c protein_coding Interval_58004 chr15 25950121 25951074 + 0 NA intron (ENSMUSG00000022270.16, intron 1 of 6) protein_coding-intron (ENSMUSG00000022270.16, intron 3 of 8) 2370 ENSMUSG00000098719.1 ENSMUSG00000098719 ENSMUST00000184098 Mir7212 miRNA Interval_3880 chr1 64288729 64289732 + 0 NA intron (ENSMUSG00000101895.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000101895.1, intron 1 of 1) 13813 ENSMUSG00000101895.1 ENSMUSG00000101895 ENSMUST00000190863 Gm28981 lincRNA Interval_79272 chr18 29346850 29348406 + 0 NA Intergenic Intergenic -94572 ENSMUSG00000117554.1 ENSMUSG00000117554 ENSMUST00000234621 4930527G23Rik lincRNA Interval_18663 chr10 88910895 88911315 + 0 NA intron (ENSMUSG00000020062.7, intron 9 of 14) protein_coding-intron (ENSMUSG00000020062.7, intron 9 of 14) 25113 ENSMUSG00000020062.7 ENSMUSG00000020062 ENSMUST00000020255 Slc5a8 protein_coding Interval_27109 chr11 62954874 62956281 + 0 NA intron (ENSMUSG00000042200.3, intron 1 of 1) protein_coding-intron (ENSMUSG00000042200.3, intron 1 of 1) 4384 ENSMUSG00000042200.3 ENSMUSG00000042200 ENSMUST00000035854 Cdrt4 protein_coding Interval_139503 chr6 100608183 100609257 + 0 NA intron (ENSMUSG00000035378.17, intron 10 of 10) protein_coding-intron (ENSMUSG00000035378.17, intron 7 of 7) 4037 ENSMUSG00000079224.5 ENSMUSG00000079224 ENSMUST00000121217 Gm6565 processed_pseudogene Interval_109566 chr3 144505790 144506596 + 0 NA intron (ENSMUSG00000040151.9, intron 1 of 6) protein_coding-intron (ENSMUSG00000040151.9, intron 1 of 6) -9021 ENSMUSG00000104903.1 ENSMUSG00000104903 ENSMUST00000196451 Gm43707 sense_intronic Interval_171548 chr9 119137261 119137563 + 0 NA intron (ENSMUSG00000038060.15, intron 23 of 36) protein_coding-intron (ENSMUSG00000038060.15, intron 17 of 26) 12651 ENSMUSG00000010651.4 ENSMUSG00000010651 ENSMUST00000127952 Acaa1b protein_coding Interval_134355 chr6 26338736 26339078 + 0 NA Intergenic Intergenic 121523 ENSMUSG00000088387.1 ENSMUSG00000088387 ENSMUST00000157762 Gm24691 snRNA Interval_111892 chr4 32303700 32304354 + 0 NA intron (ENSMUSG00000040270.16, intron 1 of 1) protein_coding-intron (ENSMUSG00000040270.16, intron 1 of 7) 52266 ENSMUSG00000087049.1 ENSMUSG00000087049 ENSMUST00000133451 Bach2it1 sense_intronic Interval_135586 chr6 41046274 41046757 + 0 NA promoter-TSS (ENSMUSG00000076462.2) TR_V_gene-promoter-TSS (ENSMUSG00000076462.2) -825 ENSMUSG00000076462.2 ENSMUSG00000076462 ENSMUST00000103263 Trbv2 TR_V_gene Interval_122618 chr5 24243923 24244883 + 0 NA Intergenic Intergenic 3891 ENSMUSG00000105713.1 ENSMUSG00000105713 ENSMUST00000200623 Gm43827 processed_pseudogene Interval_21377 chr10 128254310 128255078 + 0 NA exon (ENSMUSG00000051716.6, exon 2 of 2) protein_coding-exon (ENSMUSG00000051716.6, exon 2 of 2) 544 ENSMUSG00000051716.6 ENSMUSG00000051716 ENSMUST00000218722 Apon protein_coding Interval_28773 chr11 78237819 78238095 + 0 NA intron (ENSMUSG00000002052.6, intron 1 of 36) protein_coding-intron (ENSMUSG00000002052.6, intron 1 of 36) -12464 ENSMUSG00000002064.10 ENSMUSG00000002064 ENSMUST00000133020 Sdf2 protein_coding Interval_109944 chr3 152092552 152093584 + 0 NA TTS (ENSMUSG00000039131.15) protein_coding-TTS (ENSMUSG00000039131.15) -13371 ENSMUSG00000105698.1 ENSMUSG00000105698 ENSMUST00000198961 Gm31881 antisense Interval_24689 chr11 35930284 35931339 + 0 NA intron (ENSMUSG00000018849.6, intron 1 of 22) protein_coding-intron (ENSMUSG00000018849.6, intron 1 of 22) -65243 ENSMUSG00000081571.1 ENSMUSG00000081571 ENSMUST00000117261 Gm12125 processed_pseudogene Interval_23375 chr11 22000478 22002327 + 0 NA intron (ENSMUSG00000005917.15, intron 1 of 4) protein_coding-intron (ENSMUSG00000005917.15, intron 1 of 4) 308 ENSMUSG00000005917.15 ENSMUSG00000005917 ENSMUST00000147486 Otx1 protein_coding Interval_172660 chrX 41657757 41658073 + 0 NA intron (ENSMUSG00000001986.16, intron 14 of 14) protein_coding-intron (ENSMUSG00000001986.16, intron 13 of 15) 3681 ENSMUSG00000093206.2 ENSMUSG00000093206 ENSMUST00000175465 Gm22413 miRNA Interval_85357 chr19 25153570 25154068 + 0 NA intron (ENSMUSG00000052085.7, intron 1 of 1) protein_coding-intron (ENSMUSG00000052085.7, intron 26 of 47) 12397 ENSMUSG00000065634.1 ENSMUSG00000065634 ENSMUST00000083700 Gm24252 snoRNA Interval_102010 chr3 14932245 14932415 + 0 NA Intergenic Intergenic -38871 ENSMUSG00000098008.1 ENSMUSG00000098008 ENSMUST00000182586 A930001A20Rik lincRNA Interval_165500 chr9 48744819 48746332 + 0 NA intron (ENSMUSG00000066687.5, intron 2 of 6) protein_coding-intron (ENSMUSG00000066687.5, intron 2 of 6) 90647 ENSMUSG00000066687.5 ENSMUSG00000066687 ENSMUST00000216150 Zbtb16 protein_coding Interval_70868 chr17 15479336 15480121 + 0 NA intron (ENSMUSG00000014769.10, intron 4 of 5) protein_coding-intron (ENSMUSG00000014769.10, intron 4 of 5) 19923 ENSMUSG00000116985.1 ENSMUSG00000116985 ENSMUST00000231639 Gm49669 processed_pseudogene Interval_34224 chr11 121387726 121389209 + 0 NA promoter-TSS (ENSMUSG00000025170.13) protein_coding-promoter-TSS (ENSMUSG00000025170.13) -402 ENSMUSG00000025170.13 ENSMUSG00000025170 ENSMUST00000135290 Rab40b protein_coding Interval_403 chr1 4914444 4915016 + 0 NA intron (ENSMUSG00000002459.17, intron 2 of 3) protein_coding-intron (ENSMUSG00000002459.17, intron 3 of 4) -7869 ENSMUSG00000103280.1 ENSMUSG00000103280 ENSMUST00000194052 Gm37277 TEC Interval_123789 chr5 35530401 35532026 + 0 NA Intergenic Intergenic -5642 ENSMUSG00000036596.6 ENSMUSG00000036596 ENSMUST00000132959 Cpz protein_coding Interval_11134 chr1 179568800 179569734 + 0 NA intron (ENSMUSG00000038949.8, intron 1 of 3) protein_coding-intron (ENSMUSG00000038949.8, intron 1 of 10) 22758 ENSMUSG00000038949.8 ENSMUSG00000038949 ENSMUST00000143270 Cnst protein_coding Interval_147317 chr7 65786534 65787488 + 0 NA Intergenic Intergenic 2152 ENSMUSG00000068480.6 ENSMUSG00000068480 ENSMUST00000089593 Gm7551 processed_pseudogene Interval_10132 chr1 165988038 165988238 + 0 NA intron (ENSMUSG00000026565.18, intron 1 of 6) protein_coding-intron (ENSMUSG00000026565.18, intron 1 of 14) -14822 ENSMUSG00000097196.2 ENSMUSG00000097196 ENSMUST00000181378 Gm26665 lincRNA Interval_163852 chr9 27140978 27142146 + 0 NA intron (ENSMUSG00000031990.15, intron 1 of 2) protein_coding-intron (ENSMUSG00000031990.15, intron 1 of 8) -15012 ENSMUSG00000031990.15 ENSMUSG00000031990 ENSMUST00000213682 Jam3 protein_coding Interval_2218 chr1 37121011 37121436 + 0 NA intron (ENSMUSG00000050122.19, intron 12 of 26) protein_coding-intron (ENSMUSG00000050122.19, intron 11 of 24) 12041 ENSMUSG00000103603.1 ENSMUSG00000103603 ENSMUST00000195303 Gm37020 antisense Interval_52162 chr14 37520468 37521199 + 0 NA Intergenic Intergenic -52935 ENSMUSG00000114741.1 ENSMUSG00000114741 ENSMUST00000223601 Gm47971 TEC Interval_171203 chr9 115168476 115170283 + 0 NA intron (ENSMUSG00000040875.12, intron 5 of 11) protein_coding-intron (ENSMUSG00000040875.12, intron 3 of 9) 16679 ENSMUSG00000098127.1 ENSMUSG00000098127 ENSMUST00000183244 Gm4665 antisense Interval_164007 chr9 30833246 30833490 + 0 NA Intergenic Intergenic -51889 ENSMUSG00000111867.1 ENSMUSG00000111867 ENSMUST00000213576 Gm31013 lincRNA Interval_144749 chr7 27994026 27994392 + 0 NA intron (ENSMUSG00000096916.7, intron 5 of 5) protein_coding-intron (ENSMUSG00000096916.7, intron 3 of 3) -18841 ENSMUSG00000063047.9 ENSMUSG00000063047 ENSMUST00000207098 Zfp780b protein_coding Interval_6010 chr1 93875825 93876783 + 0 NA exon (ENSMUSG00000094651.2, exon 4 of 4) protein_coding-exon (ENSMUSG00000094651.2, exon 4 of 4) 14998 ENSMUSG00000094651.2 ENSMUSG00000094651 ENSMUST00000187896 Gal3st2 protein_coding Interval_65065 chr16 18803758 18804429 + 0 NA intron (ENSMUSG00000000028.15, intron 5 of 17) protein_coding-intron (ENSMUSG00000000028.15, intron 7 of 19) 7498 ENSMUSG00000000028.15 ENSMUSG00000000028 ENSMUST00000231819 Cdc45 protein_coding Interval_97 GL456221.1 128651 130662 + 0 NA NA NA NA NA Interval_123988 chr5 37040783 37041690 + 0 NA intron (ENSMUSG00000097686.1, intron 1 of 1) protein_coding-intron (ENSMUSG00000063646.18, intron 1 of 2) 410 ENSMUSG00000097686.1 ENSMUSG00000097686 ENSMUST00000180816 Gm26647 antisense Interval_76729 chr17 83723103 83723483 + 0 NA intron (ENSMUSG00000055817.18, intron 2 of 16) protein_coding-intron (ENSMUSG00000055817.18, intron 3 of 16) -5871 ENSMUSG00000055817.18 ENSMUSG00000055817 ENSMUST00000175920 Mta3 protein_coding Interval_129705 chr5 121878791 121879750 + 0 NA TTS (ENSMUSG00000042589.18) protein_coding-TTS (ENSMUSG00000042589.18) -13207 ENSMUSG00000042589.18 ENSMUSG00000042589 ENSMUST00000125267 Cux2 protein_coding Interval_97048 chr2 130783130 130783343 + 0 NA TTS (ENSMUSG00000027309.18) protein_coding-TTS (ENSMUSG00000027309.18) 20746 ENSMUSG00000089662.1 ENSMUSG00000089662 ENSMUST00000120631 Gm14057 transcribed_processed_pseudogene Interval_169820 chr9 102196979 102197443 + 0 NA intron (ENSMUSG00000032537.15, intron 2 of 4) protein_coding-intron (ENSMUSG00000032537.15, intron 2 of 15) 24473 ENSMUSG00000102963.1 ENSMUSG00000102963 ENSMUST00000192536 Gm37945 TEC Interval_75385 chr17 66284435 66286034 + 0 NA Intergenic Intergenic 34278 ENSMUSG00000117010.1 ENSMUSG00000117010 ENSMUST00000233050 Gm49933 processed_pseudogene Interval_124783 chr5 53961962 53962237 + 0 NA Intergenic Intergenic 43655 ENSMUSG00000107173.1 ENSMUSG00000107173 ENSMUST00000201049 Gm43266 TEC Interval_74812 chr17 56684267 56684875 + 0 NA intron (ENSMUSG00000002372.9, intron 1 of 5) protein_coding-intron (ENSMUSG00000002372.9, intron 1 of 15) 11187 ENSMUSG00000002372.9 ENSMUSG00000002372 ENSMUST00000232922 Ranbp3 protein_coding Interval_81187 chr18 56102529 56102833 + 0 NA Intergenic Intergenic -90318 ENSMUSG00000088440.1 ENSMUSG00000088440 ENSMUST00000157815 Gm23555 snoRNA Interval_132299 chr5 144014490 144015509 + 0 NA promoter-TSS (ENSMUSG00000029617.10) protein_coding-promoter-TSS (ENSMUSG00000029617.10) 1001 ENSMUSG00000093856.1 ENSMUSG00000093856 ENSMUST00000082570 Gm24311 snRNA Interval_41526 chr12 115971805 115972115 + 0 NA Intergenic Intergenic -7710 ENSMUSG00000105757.1 ENSMUSG00000105757 ENSMUST00000199643 Ighv1-83 IG_V_pseudogene Interval_95776 chr2 116074915 116076517 + 0 NA exon (ENSMUSG00000103562.1, exon 1 of 1) TEC-exon (ENSMUSG00000103562.1, exon 1 of 1) 380 ENSMUSG00000103562.1 ENSMUSG00000103562 ENSMUST00000195368 2810405F15Rik TEC Interval_31259 chr11 99171785 99172480 + 0 NA Intergenic Intergenic -17055 ENSMUSG00000037944.8 ENSMUSG00000037944 ENSMUST00000103134 Ccr7 protein_coding Interval_65343 chr16 21701452 21703190 + 0 NA Intergenic Intergenic -7741 ENSMUSG00000043391.10 ENSMUSG00000043391 ENSMUST00000232634 2510009E07Rik protein_coding Interval_171619 chr9 119587104 119587359 + 0 NA Intergenic Intergenic -23728 ENSMUSG00000032511.17 ENSMUSG00000032511 ENSMUST00000138934 Scn5a protein_coding Interval_65239 chr16 20770932 20771360 + 0 NA Intergenic Intergenic 25838 ENSMUSG00000065372.1 ENSMUSG00000065372 ENSMUST00000083438 Gm22741 snRNA Interval_21217 chr10 127270084 127270311 + 0 NA TTS (ENSMUSG00000025410.10) protein_coding-TTS (ENSMUSG00000025410.10) -6743 ENSMUSG00000025410.10 ENSMUSG00000025410 ENSMUST00000218752 Dctn2 protein_coding Interval_5942 chr1 93377449 93377778 + 0 NA intron (ENSMUSG00000034107.10, intron 3 of 23) protein_coding-intron (ENSMUSG00000034107.10, intron 3 of 23) 14358 ENSMUSG00000064389.1 ENSMUSG00000064389 ENSMUST00000082455 Gm26446 snRNA Interval_27061 chr11 62624284 62625068 + 0 NA intron (ENSMUSG00000046417.14, intron 1 of 3) protein_coding-intron (ENSMUSG00000046417.14, intron 1 of 3) -10028 ENSMUSG00000085170.1 ENSMUSG00000085170 ENSMUST00000142492 Lrrc75aos1 antisense Interval_130030 chr5 123794978 123795267 + 0 NA intron (ENSMUSG00000029414.11, intron 41 of 63) protein_coding-intron (ENSMUSG00000029414.11, intron 41 of 63) 45406 ENSMUSG00000029414.11 ENSMUSG00000029414 ENSMUST00000197002 Kntc1 protein_coding Interval_30915 chr11 97203966 97204316 + 0 NA Intergenic Intergenic -38741 ENSMUSG00000001440.5 ENSMUSG00000001440 ENSMUST00000153727 Kpnb1 protein_coding Interval_123487 chr5 32857855 32858053 + 0 NA Intergenic Intergenic 19825 ENSMUSG00000106654.1 ENSMUSG00000106654 ENSMUST00000199229 Gm2623 processed_pseudogene Interval_135997 chr6 49331474 49332517 + 0 NA intron (ENSMUSG00000050786.8, intron 1 of 3) protein_coding-intron (ENSMUSG00000050786.8, intron 1 of 2) 12688 ENSMUSG00000050786.8 ENSMUSG00000050786 ENSMUST00000114491 Ccdc126 protein_coding Interval_19888 chr10 110940813 110941256 + 0 NA TTS (ENSMUSG00000035798.14) protein_coding-TTS (ENSMUSG00000035798.14) 20844 ENSMUSG00000020186.7 ENSMUSG00000020186 ENSMUST00000220301 Csrp2 protein_coding Interval_58002 chr15 25940393 25941233 + 0 NA promoter-TSS (ENSMUSG00000022270.16) protein_coding-promoter-TSS (ENSMUSG00000022270.16) -7414 ENSMUSG00000098719.1 ENSMUSG00000098719 ENSMUST00000184098 Mir7212 miRNA Interval_78540 chr18 14603149 14604713 + 0 NA Intergenic Intergenic 33475 ENSMUSG00000037013.17 ENSMUSG00000037013 ENSMUST00000234544 Ss18 protein_coding Interval_85347 chr19 25070396 25071556 + 0 NA intron (ENSMUSG00000052085.7, intron 4 of 47) protein_coding-intron (ENSMUSG00000052085.7, intron 4 of 47) 18363 ENSMUSG00000052085.7 ENSMUSG00000052085 ENSMUST00000236576 Dock8 protein_coding Interval_14740 chr10 39522456 39523306 + 0 NA intron (ENSMUSG00000019843.14, intron 5 of 12) protein_coding-intron (ENSMUSG00000019843.14, intron 6 of 13) 35181 ENSMUSG00000087014.1 ENSMUSG00000087014 ENSMUST00000153722 Gm16364 antisense Interval_63534 chr15 101852486 101852970 + 0 NA Intergenic Intergenic -3767 ENSMUSG00000046834.7 ENSMUSG00000046834 ENSMUST00000230798 Krt1 protein_coding Interval_161105 chr8 117480088 117481146 + 0 NA Intergenic Intergenic -17674 ENSMUSG00000034330.10 ENSMUSG00000034330 ENSMUST00000081232 Plcg2 protein_coding Interval_121485 chr4 156101628 156101884 + 0 NA Intergenic Intergenic -8242 ENSMUSG00000059939.13 ENSMUSG00000059939 ENSMUST00000141882 9430015G10Rik protein_coding Interval_171431 chr9 118265588 118266719 + 0 NA Intergenic Intergenic -21633 ENSMUSG00000084608.1 ENSMUSG00000084608 ENSMUST00000122659 Gm22198 misc_RNA Interval_28047 chr11 72451848 72454117 + 0 NA exon (ENSMUSG00000040447.15, exon 13 of 13) protein_coding-exon (ENSMUSG00000040447.15, exon 13 of 13) 3368 ENSMUSG00000040447.15 ENSMUSG00000040447 ENSMUST00000147418 Spns2 protein_coding Interval_150458 chr7 110787132 110787319 + 0 NA intron (ENSMUSG00000005686.17, intron 2 of 2) protein_coding-intron (ENSMUSG00000005686.17, intron 2 of 14) -15256 ENSMUSG00000106468.1 ENSMUSG00000106468 ENSMUST00000195971 Gm47282 miRNA Interval_66987 chr16 39052650 39053204 + 0 NA Intergenic Intergenic 125718 ENSMUSG00000089607.1 ENSMUSG00000089607 ENSMUST00000158982 Gm22500 snRNA Interval_117974 chr4 127407744 127408691 + 0 NA TTS (ENSMUSG00000079998.2) processed_pseudogene-TTS (ENSMUSG00000079998.2) 581 ENSMUSG00000079998.2 ENSMUSG00000079998 ENSMUST00000116114 Gm12947 processed_pseudogene Interval_74666 chr17 55782553 55782778 + 0 NA intron (ENSMUSG00000032915.6, intron 4 of 16) protein_coding-intron (ENSMUSG00000032915.6, intron 4 of 16) -14194 ENSMUSG00000117045.1 ENSMUSG00000117045 ENSMUST00000233119 Gm18365 processed_pseudogene Interval_58999 chr15 41574759 41575255 + 0 NA intron (ENSMUSG00000022307.16, intron 2 of 15) protein_coding-intron (ENSMUSG00000022307.16, intron 2 of 15) 213904 ENSMUSG00000097232.1 ENSMUSG00000097232 ENSMUST00000180418 Gm26854 antisense Interval_79582 chr18 33870825 33872212 + 0 NA intron (ENSMUSG00000024376.7, intron 10 of 23) protein_coding-intron (ENSMUSG00000024376.7, intron 10 of 23) 76354 ENSMUSG00000092819.1 ENSMUSG00000092819 ENSMUST00000175078 Gm23639 snoRNA Interval_59204 chr15 48056078 48056394 + 0 NA intron (ENSMUSG00000022311.15, intron 13 of 70) protein_coding-intron (ENSMUSG00000022311.15, intron 13 of 70) 255563 ENSMUSG00000077752.1 ENSMUSG00000077752 ENSMUST00000104564 Gm23530 snoRNA Interval_7049 chr1 123820328 123820616 + 0 NA intron (ENSMUSG00000036815.17, intron 3 of 25) protein_coding-intron (ENSMUSG00000036815.17, intron 3 of 25) 9687 ENSMUSG00000102940.1 ENSMUSG00000102940 ENSMUST00000195556 Gm37551 TEC Interval_126771 chr5 92808669 92809757 + 0 NA promoter-TSS (ENSMUSG00000029381.16) protein_coding-promoter-TSS (ENSMUSG00000029381.16) -20651 ENSMUSG00000089268.1 ENSMUSG00000089268 ENSMUST00000158643 Mir1961 miRNA Interval_14152 chr10 28131988 28132203 + 0 NA intron (ENSMUSG00000019889.10, intron 1 of 2) protein_coding-intron (ENSMUSG00000019889.10, intron 1 of 31) -65905 ENSMUSG00000112432.1 ENSMUSG00000112432 ENSMUST00000218855 Gm18507 processed_pseudogene Interval_36955 chr12 55573265 55574588 + 0 NA Intergenic Intergenic 8687 ENSMUSG00000063129.1 ENSMUSG00000063129 ENSMUST00000080123 Aldoart2 protein_coding Interval_167211 chr9 66225632 66226572 + 0 NA intron (ENSMUSG00000032380.9, intron 3 of 9) protein_coding-intron (ENSMUSG00000032380.9, intron 3 of 11) 67876 ENSMUSG00000032380.9 ENSMUSG00000032380 ENSMUST00000129778 Dapk2 protein_coding Interval_43189 chr13 24958461 24959340 + 0 NA intron (ENSMUSG00000021340.13, intron 3 of 6) protein_coding-intron (ENSMUSG00000021340.13, intron 7 of 25) -3727 ENSMUSG00000021340.13 ENSMUSG00000021340 ENSMUST00000223873 Gpld1 protein_coding Interval_12269 chr1 191288743 191290014 + 0 NA TTS (ENSMUSG00000103174.1) lincRNA-TTS (ENSMUSG00000103174.1) 22200 ENSMUSG00000103174.1 ENSMUSG00000103174 ENSMUST00000192965 Gm37168 lincRNA Interval_101796 chr3 9597820 9598066 + 0 NA intron (ENSMUSG00000040209.12, intron 1 of 8) protein_coding-intron (ENSMUSG00000040209.12, intron 1 of 8) -32644 ENSMUSG00000040209.12 ENSMUSG00000040209 ENSMUST00000192832 Zfp704 protein_coding Interval_98769 chr2 154832416 154832894 + 0 NA intron (ENSMUSG00000027593.15, intron 2 of 2) protein_coding-intron (ENSMUSG00000027593.15, intron 2 of 9) 41301 ENSMUSG00000027593.15 ENSMUSG00000027593 ENSMUST00000151578 Raly protein_coding Interval_47719 chr13 91740814 91742810 + 0 NA promoter-TSS (ENSMUSG00000074782.3) antisense-promoter-TSS (ENSMUSG00000074782.3) -36 ENSMUSG00000074782.3 ENSMUSG00000074782 ENSMUST00000099331 4833422C13Rik antisense Interval_77571 chr17 91952812 91953020 + 0 NA Intergenic Intergenic -80777 ENSMUSG00000117433.1 ENSMUSG00000117433 ENSMUST00000234556 Gm41654 lincRNA Interval_102537 chr3 27588512 27589262 + 0 NA intron (ENSMUSG00000039286.12, intron 4 of 26) protein_coding-intron (ENSMUSG00000039286.12, intron 3 of 25) -3892 ENSMUSG00000092695.1 ENSMUSG00000092695 ENSMUST00000174954 Mir3092 miRNA Interval_159256 chr8 92385947 92386181 + 0 NA Intergenic Intergenic 28439 ENSMUSG00000031737.11 ENSMUSG00000031737 ENSMUST00000034184 Irx5 protein_coding Interval_90403 chr2 30197666 30197960 + 0 NA intron (ENSMUSG00000039648.14, intron 1 of 12) protein_coding-intron (ENSMUSG00000039648.14, intron 1 of 12) 7976 ENSMUSG00000039648.14 ENSMUSG00000039648 ENSMUST00000149522 Kyat1 protein_coding Interval_92038 chr2 52797565 52797954 + 0 NA Intergenic Intergenic -55569 ENSMUSG00000055371.17 ENSMUSG00000055371 ENSMUST00000138290 Stam2 protein_coding Interval_97837 chr2 144368332 144369669 + 0 NA promoter-TSS (ENSMUSG00000027425.18) protein_coding-promoter-TSS (ENSMUSG00000027425.18) 4 ENSMUSG00000098387.2 ENSMUSG00000098387 ENSMUST00000183618 Pet117 protein_coding Interval_148668 chr7 83976110 83976350 + 0 NA promoter-TSS (ENSMUSG00000052353.13) protein_coding-promoter-TSS (ENSMUSG00000052353.13) 81177 ENSMUSG00000038503.15 ENSMUSG00000038503 ENSMUST00000207373 Mesd protein_coding Interval_49068 chr13 107683829 107684463 + 0 NA Intergenic Intergenic -3251 ENSMUSG00000102000.6 ENSMUSG00000102000 ENSMUST00000188490 1700006H21Rik lincRNA Interval_76859 chr17 84571629 84572030 + 0 NA exon (ENSMUSG00000040852.6, exon 10 of 10) protein_coding-exon (ENSMUSG00000040852.6, exon 10 of 10) -3721 ENSMUSG00000040852.6 ENSMUSG00000040852 ENSMUST00000235090 Plekhh2 protein_coding Interval_137750 chr6 82065443 82065725 + 0 NA intron (ENSMUSG00000035104.14, intron 1 of 2) protein_coding-intron (ENSMUSG00000035104.14, intron 1 of 2) -13003 ENSMUSG00000087136.1 ENSMUSG00000087136 ENSMUST00000145950 Gm15864 antisense Interval_119825 chr4 140236824 140237027 + 0 NA intron (ENSMUSG00000040972.8, intron 1 of 9) protein_coding-intron (ENSMUSG00000040972.8, intron 1 of 9) 9859 ENSMUSG00000040972.8 ENSMUSG00000040972 ENSMUST00000039331 Igsf21 protein_coding Interval_110797 chr4 8485345 8485797 + 0 NA Intergenic Intergenic -29073 ENSMUSG00000082151.3 ENSMUSG00000082151 ENSMUST00000118311 Gm11810 processed_pseudogene Interval_150254 chr7 109020999 109022483 + 0 NA intron (ENSMUSG00000031028.14, intron 3 of 3) protein_coding-intron (ENSMUSG00000031028.14, intron 3 of 11) 36083 ENSMUSG00000048330.14 ENSMUSG00000048330 ENSMUST00000129629 Ric3 protein_coding Interval_76587 chr17 81800836 81801174 + 0 NA Intergenic Intergenic -9072 ENSMUSG00000097897.1 ENSMUSG00000097897 ENSMUST00000181557 Rpl31-ps25 processed_pseudogene Interval_4001 chr1 66099962 66100260 + 0 NA Intergenic Intergenic 37146 ENSMUSG00000083289.1 ENSMUSG00000083289 ENSMUST00000118496 Gm8812 processed_pseudogene Interval_17820 chr10 80264516 80265304 + 0 NA promoter-TSS (ENSMUSG00000069565.12) protein_coding-promoter-TSS (ENSMUSG00000069565.12) 3424 ENSMUSG00000069565.12 ENSMUSG00000069565 ENSMUST00000151619 Dazap1 protein_coding Interval_113123 chr4 48481043 48481888 + 0 NA Intergenic Intergenic -8043 ENSMUSG00000028345.15 ENSMUSG00000028345 ENSMUST00000132911 Tex10 protein_coding Interval_43441 chr13 30973497 30974710 + 0 NA promoter-TSS (ENSMUSG00000021357.14) protein_coding-promoter-TSS (ENSMUSG00000021357.14) -46 ENSMUSG00000021357.14 ENSMUSG00000021357 ENSMUST00000223216 Exoc2 protein_coding Interval_142319 chr6 140620910 140624852 + 0 NA promoter-TSS (ENSMUSG00000030232.18) protein_coding-promoter-TSS (ENSMUSG00000030232.18) -458 ENSMUSG00000107750.1 ENSMUSG00000107750 ENSMUST00000204392 Gm44013 TEC Interval_103570 chr3 49864888 49865143 + 0 NA Intergenic Intergenic -84128 ENSMUSG00000102943.1 ENSMUSG00000102943 ENSMUST00000193230 Gm37550 processed_pseudogene Interval_19707 chr10 108223489 108224696 + 0 NA intron (ENSMUSG00000019907.10, intron 3 of 24) protein_coding-intron (ENSMUSG00000019907.10, intron 3 of 25) -25502 ENSMUSG00000019907.10 ENSMUSG00000019907 ENSMUST00000219559 Ppp1r12a protein_coding Interval_104452 chr3 65863260 65864294 + 0 NA exon (ENSMUSG00000103440.1, exon 1 of 1) TEC-exon (ENSMUSG00000103440.1, exon 1 of 1) 1052 ENSMUSG00000103440.1 ENSMUSG00000103440 ENSMUST00000192502 Gm37131 TEC Interval_170221 chr9 106288766 106289401 + 0 NA intron (ENSMUSG00000023345.17, intron 6 of 10) protein_coding-intron (ENSMUSG00000023345.17, intron 6 of 10) 7473 ENSMUSG00000023345.17 ENSMUSG00000023345 ENSMUST00000186366 Poc1a protein_coding Interval_130529 chr5 128589013 128589922 + 0 NA intron (ENSMUSG00000072591.10, intron 1 of 2) lincRNA-intron (ENSMUSG00000072591.10, intron 2 of 6) 8489 ENSMUSG00000105059.1 ENSMUSG00000105059 ENSMUST00000199981 Gm42498 TEC Interval_9182 chr1 154798997 154799758 + 0 NA exon (ENSMUSG00000004110.17, exon 2 of 14) protein_coding-exon (ENSMUSG00000004110.17, exon 2 of 14) 17564 ENSMUSG00000004110.17 ENSMUSG00000004110 ENSMUST00000186256 Cacna1e protein_coding Interval_18775 chr10 90507161 90508165 + 0 NA intron (ENSMUSG00000058589.14, intron 12 of 25) protein_coding-intron (ENSMUSG00000058589.14, intron 12 of 17) 56753 ENSMUSG00000088221.1 ENSMUSG00000088221 ENSMUST00000157596 Gm22602 snRNA Interval_37951 chr12 73280548 73280923 + 0 NA intron (ENSMUSG00000034442.11, intron 1 of 1) protein_coding-intron (ENSMUSG00000034442.11, intron 4 of 4) 5975 ENSMUSG00000034442.11 ENSMUSG00000034442 ENSMUST00000221189 Trmt5 protein_coding Interval_150470 chr7 110941228 110942434 + 0 NA intron (ENSMUSG00000005611.15, intron 2 of 4) protein_coding-intron (ENSMUSG00000005611.15, intron 2 of 20) 36846 ENSMUSG00000087160.1 ENSMUSG00000087160 ENSMUST00000126011 Gm16336 antisense Interval_95798 chr2 116581762 116581944 + 0 NA Intergenic Intergenic -53363 ENSMUSG00000081787.1 ENSMUSG00000081787 ENSMUST00000120190 Gm13991 processed_pseudogene Interval_6281 chr1 105309773 105310653 + 0 NA intron (ENSMUSG00000047496.6, intron 1 of 1) protein_coding-intron (ENSMUSG00000047496.6, intron 2 of 2) -10908 ENSMUSG00000099582.1 ENSMUSG00000099582 ENSMUST00000191422 Gm29014 processed_pseudogene Interval_37894 chr12 72843322 72844591 + 0 NA Intergenic Intergenic 26244 ENSMUSG00000113779.1 ENSMUSG00000113779 ENSMUST00000222961 Gm33785 lincRNA Interval_137869 chr6 83057827 83058259 + 0 NA promoter-TSS (ENSMUSG00000009145.6) protein_coding-promoter-TSS (ENSMUSG00000009145.6) -54 ENSMUSG00000009145.6 ENSMUSG00000009145 ENSMUST00000204803 Dqx1 protein_coding Interval_10323 chr1 169156614 169157187 + 0 NA Intergenic Intergenic -137811 ENSMUSG00000098829.1 ENSMUSG00000098829 ENSMUST00000184979 Mir6354 miRNA Interval_72895 chr17 33015018 33015566 + 0 NA Intergenic Intergenic 17876 ENSMUSG00000067430.7 ENSMUSG00000067430 ENSMUST00000124465 Zfp763 protein_coding Interval_137767 chr6 82247550 82248230 + 0 NA Intergenic Intergenic 5716 ENSMUSG00000108224.1 ENSMUSG00000108224 ENSMUST00000204563 Gm31861 processed_pseudogene Interval_128838 chr5 115531152 115532512 + 0 NA intron (ENSMUSG00000029528.19, intron 1 of 10) protein_coding-intron (ENSMUSG00000029528.19, intron 1 of 10) 16569 ENSMUSG00000086849.1 ENSMUSG00000086849 ENSMUST00000149608 Gm13840 sense_intronic Interval_71487 chr17 24092127 24092831 + 0 NA intron (ENSMUSG00000024122.16, intron 2 of 3) protein_coding-intron (ENSMUSG00000024122.16, intron 9 of 13) 5615 ENSMUSG00000117523.1 ENSMUSG00000117523 ENSMUST00000234317 Gm50071 antisense Interval_79698 chr18 34589660 34589933 + 0 NA intron (ENSMUSG00000049357.11, intron 2 of 6) protein_coding-intron (ENSMUSG00000049357.11, intron 2 of 5) 7549 ENSMUSG00000049357.11 ENSMUSG00000049357 ENSMUST00000129566 Brd8dc protein_coding Interval_48730 chr13 102533444 102534439 + 0 NA Intergenic Intergenic 56344 ENSMUSG00000114846.1 ENSMUSG00000114846 ENSMUST00000225128 Gm29927 lincRNA Interval_15265 chr10 43927663 43928009 + 0 NA intron (ENSMUSG00000019864.14, intron 2 of 5) protein_coding-intron (ENSMUSG00000019864.14, intron 5 of 8) -20060 ENSMUSG00000019864.14 ENSMUSG00000019864 ENSMUST00000214453 Rtn4ip1 protein_coding Interval_37930 chr12 73103423 73104639 + 0 NA exon (ENSMUSG00000034460.9, exon 3 of 3) protein_coding-exon (ENSMUSG00000034460.9, exon 3 of 3) 9425 ENSMUSG00000034460.9 ENSMUSG00000034460 ENSMUST00000175693 Six4 protein_coding Interval_128662 chr5 114588021 114588478 + 0 NA intron (ENSMUSG00000041930.7, intron 1 of 1) protein_coding-intron (ENSMUSG00000041930.7, intron 1 of 2) 20232 ENSMUSG00000041930.7 ENSMUSG00000041930 ENSMUST00000130983 Fam222a protein_coding Interval_53805 chr14 62001582 62001867 + 0 NA Intergenic Intergenic -10595 ENSMUSG00000114368.1 ENSMUSG00000114368 ENSMUST00000224570 Gm47953 processed_pseudogene Interval_56147 chr14 107165546 107166017 + 0 NA Intergenic Intergenic 360463 ENSMUSG00000115510.1 ENSMUSG00000115510 ENSMUST00000227311 Gm9334 processed_pseudogene Interval_120665 chr4 149979746 149980394 + 0 NA exon (ENSMUSG00000028980.14, exon 5 of 5) protein_coding-exon (ENSMUSG00000028980.14, exon 5 of 5) 21195 ENSMUSG00000028980.14 ENSMUSG00000028980 ENSMUST00000152907 H6pd protein_coding Interval_162321 chr8 127079253 127079523 + 0 NA intron (ENSMUSG00000025812.18, intron 1 of 17) protein_coding-intron (ENSMUSG00000025812.18, intron 1 of 23) 32476 ENSMUSG00000088710.1 ENSMUSG00000088710 ENSMUST00000158085 Gm22730 snRNA Interval_160491 chr8 109968523 109969568 + 0 NA Intergenic Intergenic 5307 ENSMUSG00000110707.1 ENSMUSG00000110707 ENSMUST00000211847 Gm45795 processed_pseudogene Interval_48073 chr13 95781056 95782058 + 0 NA intron (ENSMUSG00000021676.10, intron 2 of 6) protein_coding-intron (ENSMUSG00000021676.10, intron 2 of 35) 44974 ENSMUSG00000118436.1 ENSMUSG00000118436 ENSMUST00000238548 Gm32880 antisense Interval_32781 chr11 110536767 110538326 + 0 NA Intergenic Intergenic -6961 ENSMUSG00000085985.1 ENSMUSG00000085985 ENSMUST00000144689 Gm11682 lincRNA Interval_54215 chr14 66324764 66325550 + 0 NA Intergenic Intergenic 16072 ENSMUSG00000114618.1 ENSMUSG00000114618 ENSMUST00000225213 Gm41183 lincRNA Interval_29214 chr11 81590847 81591133 + 0 NA intron (ENSMUSG00000087534.1, intron 1 of 3) protein_coding-intron (ENSMUSG00000020704.13, intron 1 of 9) 3629 ENSMUSG00000087534.1 ENSMUSG00000087534 ENSMUST00000156193 Gm11418 antisense Interval_83745 chr19 4338303 4338535 + 0 NA intron (ENSMUSG00000054611.17, intron 12 of 20) protein_coding-intron (ENSMUSG00000054611.17, intron 12 of 20) -10008 ENSMUSG00000054611.17 ENSMUSG00000054611 ENSMUST00000176495 Kdm2a protein_coding Interval_119697 chr4 139288952 139289642 + 0 NA intron (ENSMUSG00000028745.18, intron 1 of 1) protein_coding-intron (ENSMUSG00000028745.18, intron 8 of 8) 21368 ENSMUSG00000028744.15 ENSMUSG00000028744 ENSMUST00000141007 Pqlc2 protein_coding Interval_93175 chr2 70838067 70839002 + 0 NA Intergenic Intergenic -18155 ENSMUSG00000082303.1 ENSMUSG00000082303 ENSMUST00000120668 Gm13633 processed_pseudogene Interval_106595 chr3 97585080 97586102 + 0 NA intron (ENSMUSG00000028089.5, intron 11 of 15) protein_coding-intron (ENSMUSG00000028089.5, intron 12 of 22) -24341 ENSMUSG00000105004.1 ENSMUSG00000105004 ENSMUST00000198613 Gm43075 TEC Interval_152926 chr7 139805532 139806893 + 0 NA Intergenic Intergenic 27194 ENSMUSG00000098619.1 ENSMUSG00000098619 ENSMUST00000184499 Mir6401 miRNA Interval_92269 chr2 57698209 57699361 + 0 NA Intergenic Intergenic -44963 ENSMUSG00000087964.1 ENSMUSG00000087964 ENSMUST00000157339 Gm25388 snoRNA Interval_46568 chr13 67237727 67239809 + 0 NA Intergenic Intergenic -8799 ENSMUSG00000114771.1 ENSMUSG00000114771 ENSMUST00000225201 Gm49064 lincRNA Interval_50258 chr14 11495699 11495882 + 0 NA intron (ENSMUSG00000114786.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000114786.1, intron 1 of 1) -4132 ENSMUSG00000114850.1 ENSMUSG00000114850 ENSMUST00000224598 Gm8438 processed_pseudogene Interval_35531 chr12 24558962 24559397 + 0 NA TTS (ENSMUSG00000059669.8) protein_coding-TTS (ENSMUSG00000059669.8) -21540 ENSMUSG00000020656.16 ENSMUSG00000020656 ENSMUST00000020985 Grhl1 protein_coding Interval_100094 chr2 167044691 167045686 + 0 NA intron (ENSMUSG00000039501.14, intron 7 of 7) protein_coding-intron (ENSMUSG00000039501.14, intron 7 of 13) 15237 ENSMUSG00000039501.14 ENSMUSG00000039501 ENSMUST00000135967 Znfx1 protein_coding Interval_38878 chr12 83566880 83567639 + 0 NA intron (ENSMUSG00000042628.8, intron 5 of 12) protein_coding-intron (ENSMUSG00000042628.8, intron 4 of 11) 29563 ENSMUSG00000042628.8 ENSMUSG00000042628 ENSMUST00000223380 Zfyve1 protein_coding Interval_65724 chr16 26065128 26065959 + 0 NA intron (ENSMUSG00000038168.5, intron 1 of 14) protein_coding-intron (ENSMUSG00000038168.5, intron 1 of 14) -24275 ENSMUSG00000090203.2 ENSMUSG00000090203 ENSMUST00000159040 AU015336 sense_intronic Interval_144889 chr7 28780191 28780527 + 0 NA intron (ENSMUSG00000015149.14, intron 5 of 12) protein_coding-intron (ENSMUSG00000015149.14, intron 8 of 15) 4655 ENSMUSG00000015149.14 ENSMUSG00000015149 ENSMUST00000128961 Sirt2 protein_coding Interval_82312 chr18 70567928 70569279 + 0 NA exon (ENSMUSG00000024513.16, exon 1 of 7) protein_coding-exon (ENSMUSG00000024513.16, exon 1 of 7) -24652 ENSMUSG00000024513.16 ENSMUSG00000024513 ENSMUST00000128555 Mbd2 protein_coding Interval_165179 chr9 45034427 45034740 + 0 NA Intergenic Intergenic -5216 ENSMUSG00000032092.5 ENSMUSG00000032092 ENSMUST00000216777 Mpzl2 protein_coding Interval_42592 chr13 16115017 16115251 + 0 NA Intergenic Intergenic 69493 ENSMUSG00000113715.1 ENSMUSG00000113715 ENSMUST00000221903 Gm6562 processed_pseudogene Interval_34584 chr12 5553923 5554114 + 0 NA Intergenic Intergenic 36606 ENSMUSG00000097977.1 ENSMUSG00000097977 ENSMUST00000182336 Gm5652 processed_pseudogene Interval_170753 chr9 110540027 110540712 + 0 NA intron (ENSMUSG00000044791.16, intron 1 of 20) protein_coding-intron (ENSMUSG00000044791.16, intron 1 of 20) -2842 ENSMUSG00000104983.1 ENSMUSG00000104983 ENSMUST00000199595 Gm42763 TEC Interval_87734 chr19 55519742 55520056 + 0 NA intron (ENSMUSG00000024983.10, intron 8 of 8) protein_coding-intron (ENSMUSG00000024983.10, intron 7 of 7) 203572 ENSMUSG00000024983.10 ENSMUSG00000024983 ENSMUST00000224396 Vti1a protein_coding Interval_52736 chr14 49201271 49201993 + 0 NA Intergenic Intergenic -16147 ENSMUSG00000115772.1 ENSMUSG00000115772 ENSMUST00000226956 Gm48935 lincRNA Interval_11559 chr1 182686173 182687340 + 0 NA promoter-TSS (ENSMUSG00000102688.1) lincRNA-promoter-TSS (ENSMUSG00000102688.1) -974 ENSMUSG00000102688.1 ENSMUSG00000102688 ENSMUST00000192917 Gm37218 lincRNA Interval_74957 chr17 58099269 58099450 + 0 NA intron (ENSMUSG00000038048.8, intron 8 of 23) protein_coding-intron (ENSMUSG00000038048.8, intron 8 of 23) -260138 ENSMUSG00000071052.4 ENSMUSG00000071052 ENSMUST00000095218 Rpl7a-ps5 processed_pseudogene Interval_154945 chr8 25215064 25216714 + 0 NA intron (ENSMUSG00000065954.11, intron 1 of 4) protein_coding-intron (ENSMUSG00000065954.11, intron 1 of 2) -14440 ENSMUSG00000065954.11 ENSMUSG00000065954 ENSMUST00000211218 Tacc1 protein_coding Interval_20162 chr10 115348937 115349296 + 0 NA promoter-TSS (ENSMUSG00000069520.6) protein_coding-promoter-TSS (ENSMUSG00000069520.6) 13377 ENSMUSG00000069520.6 ENSMUSG00000069520 ENSMUST00000219597 Tmem19 protein_coding Interval_169712 chr9 100580235 100584143 + 0 NA Intergenic Intergenic 22799 ENSMUSG00000111164.1 ENSMUSG00000111164 ENSMUST00000215061 Gm47803 processed_pseudogene Interval_114130 chr4 63916141 63916404 + 0 NA Intergenic Intergenic -20173 ENSMUSG00000084345.3 ENSMUSG00000084345 ENSMUST00000120241 Rpl17-ps4 processed_pseudogene Interval_70513 chr17 11376458 11376823 + 0 NA intron (ENSMUSG00000023826.16, intron 3 of 10) protein_coding-intron (ENSMUSG00000023826.16, intron 4 of 6) -89875 ENSMUSG00000104527.1 ENSMUSG00000104527 ENSMUST00000195853 Gm37332 TEC Interval_17933 chr10 80890015 80890547 + 0 NA exon (ENSMUSG00000059406.8, exon 10 of 18) protein_coding-exon (ENSMUSG00000059406.8, exon 10 of 18) 10504 ENSMUSG00000020219.7 ENSMUSG00000020219 ENSMUST00000218149 Timm13 protein_coding Interval_151729 chr7 126287734 126288407 + 0 NA intron (ENSMUSG00000042978.11, intron 1 of 1) protein_coding-intron (ENSMUSG00000042978.11, intron 1 of 3) 11846 ENSMUSG00000066180.5 ENSMUSG00000066180 ENSMUST00000084598 Gm10155 processed_pseudogene Interval_110575 chr4 4064423 4064665 + 0 NA intron (ENSMUSG00000071019.11, intron 3 of 6) protein_coding-intron (ENSMUSG00000071019.11, intron 2 of 5) 12978 ENSMUSG00000071019.11 ENSMUSG00000071019 ENSMUST00000108383 Sdr16c6 protein_coding Interval_10156 chr1 166153242 166155358 + 0 NA TTS (ENSMUSG00000000544.14) protein_coding-TTS (ENSMUSG00000000544.14) 23833 ENSMUSG00000000544.14 ENSMUSG00000000544 ENSMUST00000166860 Gpa33 protein_coding Interval_150179 chr7 107645675 107645979 + 0 NA intron (ENSMUSG00000036528.16, intron 2 of 5) protein_coding-intron (ENSMUSG00000036528.16, intron 2 of 24) -19484 ENSMUSG00000036528.16 ENSMUSG00000036528 ENSMUST00000208159 Ppfibp2 protein_coding Interval_111450 chr4 21737940 21738234 + 0 NA exon (ENSMUSG00000028252.20, exon 6 of 6) protein_coding-exon (ENSMUSG00000028252.20, exon 6 of 6) 10329 ENSMUSG00000028252.20 ENSMUSG00000028252 ENSMUST00000133712 Ccnc protein_coding Interval_21639 chr11 3386755 3387445 + 0 NA intron (ENSMUSG00000020451.17, intron 1 of 4) protein_coding-intron (ENSMUSG00000020451.17, intron 2 of 15) -32189 ENSMUSG00000087055.1 ENSMUSG00000087055 ENSMUST00000142322 Gm11948 sense_intronic Interval_31489 chr11 100976794 100977084 + 0 NA Intergenic Intergenic -6388 ENSMUSG00000004044.9 ENSMUSG00000004044 ENSMUST00000132934 Cavin1 protein_coding Interval_140341 chr6 116715293 116716939 + 0 NA intron (ENSMUSG00000048108.13, intron 1 of 5) protein_coding-intron (ENSMUSG00000048108.13, intron 1 of 4) 613 ENSMUSG00000048108.13 ENSMUSG00000048108 ENSMUST00000129255 Tmem72 protein_coding Interval_14807 chr10 40087654 40087934 + 0 NA intron (ENSMUSG00000019838.11, intron 1 of 2) protein_coding-intron (ENSMUSG00000019838.11, intron 1 of 5) -21668 ENSMUSG00000077200.1 ENSMUSG00000077200 ENSMUST00000104012 Gm25613 snoRNA Interval_135912 chr6 48626815 48627849 + 0 NA promoter-TSS (ENSMUSG00000053297.14) protein_coding-promoter-TSS (ENSMUSG00000053297.14) 51 ENSMUSG00000053297.14 ENSMUSG00000053297 ENSMUST00000154570 AI854703 protein_coding Interval_161290 chr8 119546936 119547572 + 0 NA exon (ENSMUSG00000031835.16, exon 2 of 2) protein_coding-exon (ENSMUSG00000031835.16, exon 2 of 2) 11187 ENSMUSG00000031835.16 ENSMUSG00000031835 ENSMUST00000212813 Mbtps1 protein_coding Interval_23479 chr11 22842387 22843501 + 0 NA TTS (ENSMUSG00000092455.1) processed_transcript-TTS (ENSMUSG00000092455.1) 3645 ENSMUSG00000092455.1 ENSMUSG00000092455 ENSMUST00000174690 Gm20456 processed_transcript Interval_113803 chr4 58926827 58928485 + 0 NA Intergenic Intergenic -10369 ENSMUSG00000092753.1 ENSMUSG00000092753 ENSMUST00000175012 Gm26400 rRNA Interval_102454 chr3 26811449 26811625 + 0 NA intron (ENSMUSG00000039335.11, intron 4 of 9) protein_coding-intron (ENSMUSG00000039335.11, intron 4 of 10) 173887 ENSMUSG00000039335.11 ENSMUSG00000039335 ENSMUST00000108305 Spata16 protein_coding Interval_7269 chr1 128336448 128337091 + 0 NA intron (ENSMUSG00000026355.11, intron 13 of 15) protein_coding-intron (ENSMUSG00000026355.11, intron 13 of 16) 9273 ENSMUSG00000026355.11 ENSMUSG00000026355 ENSMUST00000188755 Mcm6 protein_coding Interval_26678 chr11 59645307 59645736 + 0 NA Intergenic Intergenic 34936 ENSMUSG00000044061.7 ENSMUSG00000044061 ENSMUST00000055276 Olfr225 polymorphic_pseudogene Interval_57778 chr15 19625923 19626552 + 0 NA Intergenic Intergenic -51995 ENSMUSG00000115413.1 ENSMUSG00000115413 ENSMUST00000226230 Gm49166 lincRNA Interval_90732 chr2 32174071 32175955 + 0 NA intron (ENSMUSG00000039262.16, intron 1 of 31) protein_coding-intron (ENSMUSG00000039262.16, intron 1 of 29) 1842 ENSMUSG00000099155.1 ENSMUSG00000099155 ENSMUST00000184513 Gm27805 miRNA Interval_49229 chr13 109673589 109674061 + 0 NA intron (ENSMUSG00000021699.17, intron 1 of 14) protein_coding-intron (ENSMUSG00000021699.17, intron 1 of 14) -229984 ENSMUSG00000084651.1 ENSMUSG00000084651 ENSMUST00000122702 Mir1904 miRNA Interval_88516 chr2 5770574 5770845 + 0 NA Intergenic Intergenic 52410 ENSMUSG00000039128.13 ENSMUSG00000039128 ENSMUST00000150876 Cdc123 protein_coding Interval_147675 chr7 71705044 71706228 + 0 NA promoter-TSS (ENSMUSG00000109388.1) TEC-promoter-TSS (ENSMUSG00000109388.1) -440 ENSMUSG00000109388.1 ENSMUSG00000109388 ENSMUST00000209083 Gm44688 TEC Interval_97882 chr2 144734246 144734503 + 0 NA intron (ENSMUSG00000027430.12, intron 1 of 2) protein_coding-intron (ENSMUSG00000027430.12, intron 4 of 5) -21955 ENSMUSG00000084306.1 ENSMUSG00000084306 ENSMUST00000117385 Gm11743 processed_pseudogene Interval_106109 chr3 93281507 93281823 + 0 NA exon (ENSMUSG00000102439.4, exon 1 of 1) protein_coding-exon (ENSMUSG00000102439.4, exon 1 of 1) 3524 ENSMUSG00000081640.1 ENSMUSG00000081640 ENSMUST00000122125 Rplp0-ps1 processed_pseudogene Interval_26481 chr11 58086159 58086533 + 0 NA intron (ENSMUSG00000086962.4, intron 1 of 8) protein_coding-intron (ENSMUSG00000086962.4, intron 1 of 8) 6788 ENSMUSG00000086962.4 ENSMUSG00000086962 ENSMUST00000137124 Gm12248 protein_coding Interval_1520 chr1 24677712 24679371 + 0 NA promoter-TSS (ENSMUSG00000073725.8) protein_coding-promoter-TSS (ENSMUSG00000073725.8) -89 ENSMUSG00000073725.8 ENSMUSG00000073725 ENSMUST00000190195 Lmbrd1 protein_coding Interval_148563 chr7 82699741 82700039 + 0 NA intron (ENSMUSG00000038563.14, intron 15 of 19) protein_coding-intron (ENSMUSG00000038563.14, intron 15 of 19) 4491 ENSMUSG00000108991.1 ENSMUSG00000108991 ENSMUST00000209142 Gm45807 TEC Interval_142361 chr6 140888394 140889023 + 0 NA Intergenic Intergenic -66927 ENSMUSG00000107638.2 ENSMUSG00000107638 ENSMUST00000204355 Gm30524 lincRNA Interval_134590 chr6 29806795 29808039 + 0 NA intron (ENSMUSG00000029772.17, intron 1 of 17) protein_coding-intron (ENSMUSG00000029772.17, intron 1 of 16) 56656 ENSMUSG00000081564.1 ENSMUSG00000081564 ENSMUST00000119868 Gm13717 processed_pseudogene Interval_114054 chr4 62771546 62772177 + 0 NA Intergenic Intergenic -40567 ENSMUSG00000077161.1 ENSMUSG00000077161 ENSMUST00000103973 Gm24117 snoRNA Interval_159599 chr8 95737811 95738989 + 0 NA exon (ENSMUSG00000036550.16, exon 1 of 1) protein_coding-exon (ENSMUSG00000036550.16, exon 1 of 1) 7795 ENSMUSG00000065089.1 ENSMUSG00000065089 ENSMUST00000083155 Gm26493 snoRNA Interval_147143 chr7 63834098 63834359 + 0 NA Intergenic Intergenic 7250 ENSMUSG00000108629.1 ENSMUSG00000108629 ENSMUST00000206076 Gm44720 processed_pseudogene Interval_45477 chr13 55346597 55347716 + 0 NA intron (ENSMUSG00000021484.8, intron 1 of 1) protein_coding-intron (ENSMUSG00000021484.8, intron 7 of 7) 15455 ENSMUSG00000021484.8 ENSMUSG00000021484 ENSMUST00000225366 Lman2 protein_coding Interval_14628 chr10 37218405 37219419 + 0 NA Intergenic Intergenic 44836 ENSMUSG00000110799.1 ENSMUSG00000110799 ENSMUST00000217044 4930543K20Rik lincRNA Interval_62356 chr15 91000457 91001782 + 0 NA intron (ENSMUSG00000022629.17, intron 1 of 32) protein_coding-intron (ENSMUSG00000022629.17, intron 1 of 35) 43123 ENSMUSG00000116113.1 ENSMUSG00000116113 ENSMUST00000229864 Gm49545 processed_pseudogene Interval_22748 chr11 14441805 14442074 + 0 NA Intergenic Intergenic -45674 ENSMUSG00000080734.1 ENSMUSG00000080734 ENSMUST00000120786 Gm12006 processed_pseudogene Interval_12535 chr1 194960390 194960754 + 0 NA exon (ENSMUSG00000016494.9, exon 8 of 8) protein_coding-exon (ENSMUSG00000016494.9, exon 8 of 8) 16388 ENSMUSG00000097325.2 ENSMUSG00000097325 ENSMUST00000180780 Gm16897 antisense Interval_119919 chr4 140914509 140914699 + 0 NA intron (ENSMUSG00000028927.6, intron 1 of 15) protein_coding-intron (ENSMUSG00000028927.6, intron 1 of 15) -4080 ENSMUSG00000064443.1 ENSMUSG00000064443 ENSMUST00000082509 Gm26226 snRNA Interval_100809 chr2 172643809 172644703 + 0 NA Intergenic Intergenic 93265 ENSMUSG00000028640.11 ENSMUSG00000028640 ENSMUST00000142633 Tfap2c protein_coding Interval_104698 chr3 69519681 69520691 + 0 NA intron (ENSMUSG00000027784.10, intron 2 of 3) protein_coding-intron (ENSMUSG00000027784.10, intron 2 of 3) 22973 ENSMUSG00000027784.10 ENSMUSG00000027784 ENSMUST00000128637 Ppm1l protein_coding Interval_172719 chrX 47908762 47908990 + 0 NA Intergenic Intergenic 8531 ENSMUSG00000068014.5 ENSMUSG00000068014 ENSMUST00000119328 Gm14648 processed_pseudogene Interval_120271 chr4 145075227 145075425 + 0 NA intron (ENSMUSG00000020220.16, intron 35 of 51) protein_coding-intron (ENSMUSG00000020220.16, intron 51 of 67) 80160 ENSMUSG00000020220.16 ENSMUSG00000020220 ENSMUST00000132700 Vps13d protein_coding Interval_54975 chr14 76604907 76605415 + 0 NA Intergenic Intergenic 31703 ENSMUSG00000115143.1 ENSMUSG00000115143 ENSMUST00000227724 Fkbp1a-ps1 processed_pseudogene Interval_34627 chr12 8107168 8107406 + 0 NA intron (ENSMUSG00000112694.1, intron 2 of 3) antisense-intron (ENSMUSG00000112694.1, intron 2 of 3) -100862 ENSMUSG00000037669.15 ENSMUSG00000037669 ENSMUST00000219532 Ldah protein_coding Interval_123327 chr5 31469721 31471109 + 0 NA exon (ENSMUSG00000062761.7, exon 8 of 14) protein_coding-exon (ENSMUSG00000062761.7, exon 8 of 14) 9393 ENSMUSG00000107120.1 ENSMUSG00000107120 ENSMUST00000202437 Gm43059 TEC Interval_21207 chr10 127219205 127219806 + 0 NA Intergenic Intergenic -7920 ENSMUSG00000025417.8 ENSMUSG00000025417 ENSMUST00000218386 Pip4k2c protein_coding Interval_78364 chr18 12188494 12189036 + 0 NA promoter-TSS (ENSMUSG00000024410.15) protein_coding-promoter-TSS (ENSMUSG00000024410.15) -406 ENSMUSG00000024410.15 ENSMUSG00000024410 ENSMUST00000234982 Rmc1 protein_coding Interval_81259 chr18 56816079 56816256 + 0 NA intron (ENSMUSG00000032656.14, intron 1 of 2) protein_coding-intron (ENSMUSG00000032656.14, intron 1 of 4) 46450 ENSMUSG00000087597.1 ENSMUSG00000087597 ENSMUST00000128240 Gm15345 antisense Interval_70718 chr17 13835322 13836122 + 0 NA intron (ENSMUSG00000068036.16, intron 12 of 32) protein_coding-intron (ENSMUSG00000068036.16, intron 12 of 18) 27081 ENSMUSG00000089883.1 ENSMUSG00000089883 ENSMUST00000160079 Gm3355 processed_pseudogene Interval_144037 chr7 19118081 19120404 + 0 NA promoter-TSS (ENSMUSG00000050428.7) protein_coding-promoter-TSS (ENSMUSG00000050428.7) -874 ENSMUSG00000085601.7 ENSMUSG00000085601 ENSMUST00000127433 Gm4969 protein_coding Interval_169919 chr9 102972109 102974369 + 0 NA Intergenic Intergenic -18656 ENSMUSG00000084539.1 ENSMUSG00000084539 ENSMUST00000122590 Gm25842 misc_RNA Interval_86941 chr19 45110685 45110896 + 0 NA TTS (ENSMUSG00000117848.1) lincRNA-TTS (ENSMUSG00000117848.1) 23739 ENSMUSG00000117848.1 ENSMUSG00000117848 ENSMUST00000237139 Gm35867 lincRNA Interval_146890 chr7 55327743 55328020 + 0 NA Intergenic Intergenic 51945 ENSMUSG00000108325.1 ENSMUSG00000108325 ENSMUST00000205934 Gm44898 TEC Interval_8285 chr1 136936078 136936819 + 0 NA intron (ENSMUSG00000026398.14, intron 6 of 8) protein_coding-intron (ENSMUSG00000026398.14, intron 6 of 8) 12725 ENSMUSG00000026398.14 ENSMUSG00000026398 ENSMUST00000195428 Nr5a2 protein_coding Interval_126625 chr5 91061260 91061824 + 0 NA intron (ENSMUSG00000107350.1, intron 1 of 1) antisense-intron (ENSMUSG00000107350.1, intron 1 of 1) -13080 ENSMUSG00000029377.5 ENSMUSG00000029377 ENSMUST00000031324 Ereg protein_coding Interval_125382 chr5 66582089 66582337 + 0 NA intron (ENSMUSG00000029207.16, intron 1 of 5) protein_coding-intron (ENSMUSG00000029207.16, intron 1 of 17) 13357 ENSMUSG00000106706.1 ENSMUSG00000106706 ENSMUST00000201865 C530043K16Rik TEC Interval_71977 chr17 27392616 27394049 + 0 NA Intergenic Intergenic -4815 ENSMUSG00000116970.1 ENSMUSG00000116970 ENSMUST00000232032 Gm49796 lincRNA Interval_159025 chr8 88917232 88917799 + 0 NA Intergenic Intergenic -54441 ENSMUSG00000109778.1 ENSMUSG00000109778 ENSMUST00000211407 Gm45504 TEC Interval_132037 chr5 142427684 142428768 + 0 NA intron (ENSMUSG00000056493.9, intron 1 of 8) protein_coding-intron (ENSMUSG00000056493.9, intron 1 of 8) 26729 ENSMUSG00000056493.9 ENSMUSG00000056493 ENSMUST00000072837 Foxk1 protein_coding Interval_48665 chr13 100989577 100989882 + 0 NA Intergenic Intergenic 24257 ENSMUSG00000098005.1 ENSMUSG00000098005 ENSMUST00000182472 Gm6114 processed_pseudogene Interval_165376 chr9 46891051 46892452 + 0 NA Intergenic Intergenic -21742 ENSMUSG00000099696.6 ENSMUSG00000099696 ENSMUST00000189828 2900052N01Rik lincRNA Interval_31034 chr11 97812560 97813469 + 0 NA intron (ENSMUSG00000038366.15, intron 1 of 1) protein_coding-intron (ENSMUSG00000038366.15, intron 2 of 6) -2234 ENSMUSG00000038366.15 ENSMUSG00000038366 ENSMUST00000107568 Lasp1 protein_coding Interval_9246 chr1 155457489 155457864 + 0 NA Intergenic Intergenic 69467 ENSMUSG00000073535.5 ENSMUSG00000073535 ENSMUST00000194133 Gm5532 lincRNA Interval_52147 chr14 37127612 37128429 + 0 NA intron (ENSMUSG00000041028.16, intron 5 of 5) protein_coding-intron (ENSMUSG00000041028.16, intron 5 of 8) 7234 ENSMUSG00000041028.16 ENSMUSG00000041028 ENSMUST00000223921 Ghitm protein_coding Interval_77720 chr17 94670730 94671954 + 0 NA Intergenic Intergenic 10945 ENSMUSG00000117382.1 ENSMUSG00000117382 ENSMUST00000234855 Gm50005 processed_pseudogene Interval_135094 chr6 35338402 35338673 + 0 NA Intergenic Intergenic 7691 ENSMUSG00000107341.1 ENSMUSG00000107341 ENSMUST00000201560 1700065J11Rik lincRNA Interval_164671 chr9 40469392 40469747 + 0 NA intron (ENSMUSG00000040111.17, intron 1 of 20) protein_coding-intron (ENSMUSG00000040111.17, intron 1 of 20) -18151 ENSMUSG00000111515.1 ENSMUSG00000111515 ENSMUST00000215697 Gm5055 processed_pseudogene Interval_22801 chr11 16009206 16009406 + 0 NA Intergenic Intergenic -28487 ENSMUSG00000104323.1 ENSMUSG00000104323 ENSMUST00000193500 Gm37319 TEC Interval_96432 chr2 122511977 122512286 + 0 NA intron (ENSMUSG00000079071.2, intron 5 of 17) protein_coding-intron (ENSMUSG00000079071.2, intron 5 of 17) 26214 ENSMUSG00000079071.2 ENSMUSG00000079071 ENSMUST00000132215 Slc28a2b protein_coding Interval_133646 chr6 7982192 7984114 + 0 NA exon (ENSMUSG00000096403.2, exon 1 of 1) processed_pseudogene-exon (ENSMUSG00000096403.2, exon 1 of 1) 230 ENSMUSG00000096403.2 ENSMUSG00000096403 ENSMUST00000178598 Rnps1-ps processed_pseudogene Interval_161459 chr8 120563553 120564749 + 0 NA TTS (ENSMUSG00000031822.20) protein_coding-TTS (ENSMUSG00000031822.20) 1528 ENSMUSG00000031822.20 ENSMUSG00000031822 ENSMUST00000141113 Gse1 protein_coding Interval_128054 chr5 110543832 110545016 + 0 NA promoter-TSS (ENSMUSG00000033316.14) protein_coding-promoter-TSS (ENSMUSG00000033316.14) 29480 ENSMUSG00000048215.14 ENSMUSG00000048215 ENSMUST00000129007 A630023P12Rik lincRNA Interval_26028 chr11 53551338 53552325 + 0 NA Intergenic Intergenic 15474 ENSMUSG00000086851.1 ENSMUSG00000086851 ENSMUST00000153461 A430108G06Rik processed_transcript Interval_150211 chr7 108120392 108122184 + 0 NA promoter-TSS (ENSMUSG00000088237.1) snRNA-promoter-TSS (ENSMUSG00000088237.1) -761 ENSMUSG00000088237.1 ENSMUSG00000088237 ENSMUST00000157612 Gm25424 snRNA Interval_72282 chr17 28967031 28967606 + 0 NA TTS (ENSMUSG00000005936.19) protein_coding-TTS (ENSMUSG00000005936.19) 14858 ENSMUSG00000005936.19 ENSMUSG00000005936 ENSMUST00000168507 Kctd20 protein_coding Interval_59009 chr15 41657047 41659698 + 0 NA intron (ENSMUSG00000022307.16, intron 3 of 15) protein_coding-intron (ENSMUSG00000022307.16, intron 3 of 15) 130539 ENSMUSG00000097232.1 ENSMUSG00000097232 ENSMUST00000180418 Gm26854 antisense Interval_59160 chr15 45651877 45652206 + 0 NA Intergenic Intergenic -310485 ENSMUSG00000115549.1 ENSMUSG00000115549 ENSMUST00000228018 Gm2203 processed_pseudogene Interval_23204 chr11 20552207 20552409 + 0 NA intron (ENSMUSG00000049800.13, intron 1 of 1) protein_coding-intron (ENSMUSG00000049800.13, intron 1 of 1) 9055 ENSMUSG00000049800.13 ENSMUSG00000049800 ENSMUST00000109585 Sertad2 protein_coding Interval_9093 chr1 153549351 153551032 + 0 NA promoter-TSS (ENSMUSG00000042684.8) protein_coding-promoter-TSS (ENSMUSG00000042684.8) -480 ENSMUSG00000042684.8 ENSMUSG00000042684 ENSMUST00000187747 Npl protein_coding Interval_72384 chr17 29514352 29514820 + 0 NA Intergenic Intergenic 21549 ENSMUSG00000024014.8 ENSMUSG00000024014 ENSMUST00000234270 Pim1 protein_coding Interval_2837 chr1 46135673 46135866 + 0 NA intron (ENSMUSG00000041144.12, intron 16 of 64) protein_coding-intron (ENSMUSG00000041144.12, intron 17 of 65) 68916 ENSMUSG00000041144.12 ENSMUSG00000041144 ENSMUST00000185879 Dnah7b protein_coding Interval_12486 chr1 194208268 194209569 + 0 NA Intergenic Intergenic 13841 ENSMUSG00000103692.1 ENSMUSG00000103692 ENSMUST00000193395 4930503O07Rik lincRNA Interval_59334 chr15 51749281 51749777 + 0 NA Intergenic Intergenic 86728 ENSMUSG00000022312.11 ENSMUSG00000022312 ENSMUST00000228583 Eif3h protein_coding Interval_59117 chr15 44338978 44339476 + 0 NA Intergenic Intergenic -6423 ENSMUSG00000088756.1 ENSMUSG00000088756 ENSMUST00000158131 Gm24903 snoRNA Interval_156016 chr8 42259246 42259467 + 0 NA Intergenic Intergenic 12445 ENSMUSG00000053038.8 ENSMUSG00000053038 ENSMUST00000065243 Gm6180 processed_pseudogene Interval_158437 chr8 83724422 83725621 + 0 NA promoter-TSS (ENSMUSG00000002885.14) protein_coding-promoter-TSS (ENSMUSG00000002885.14) -1037 ENSMUSG00000098465.1 ENSMUSG00000098465 ENSMUST00000184114 Mir1668 miRNA Interval_81545 chr18 61611153 61611395 + 0 NA Intergenic Intergenic -28379 ENSMUSG00000098098.7 ENSMUSG00000098098 ENSMUST00000183087 Bvht lincRNA Interval_140478 chr6 118609879 118610788 + 0 NA intron (ENSMUSG00000051331.16, intron 36 of 44) protein_coding-intron (ENSMUSG00000051331.16, intron 38 of 46) 8891 ENSMUSG00000100867.1 ENSMUSG00000100867 ENSMUST00000185373 Gm18981 processed_pseudogene Interval_119519 chr4 138089676 138089887 + 0 NA intron (ENSMUSG00000028760.16, intron 6 of 8) protein_coding-intron (ENSMUSG00000028760.16, intron 5 of 9) 48737 ENSMUSG00000084804.1 ENSMUSG00000084804 ENSMUST00000124620 1700095J12Rik antisense Interval_16705 chr10 67112558 67113078 + 0 NA intron (ENSMUSG00000037876.17, intron 1 of 9) protein_coding-intron (ENSMUSG00000037876.17, intron 1 of 1) -72930 ENSMUSG00000037876.17 ENSMUSG00000037876 ENSMUST00000173236 Jmjd1c protein_coding Interval_5162 chr1 86143233 86144607 + 0 NA intron (ENSMUSG00000094638.1, intron 2 of 5) protein_coding-intron (ENSMUSG00000094638.1, intron 2 of 5) 10283 ENSMUSG00000094638.1 ENSMUSG00000094638 ENSMUST00000135197 Gm21972 protein_coding Interval_134650 chr6 30153895 30154258 + 0 NA TTS (ENSMUSG00000058440.14) protein_coding-TTS (ENSMUSG00000058440.14) -9949 ENSMUSG00000065343.1 ENSMUSG00000065343 ENSMUST00000083409 Gm25580 misc_RNA Interval_37789 chr12 71992502 71992953 + 0 NA TTS (ENSMUSG00000034574.10) protein_coding-TTS (ENSMUSG00000034574.10) 56532 ENSMUSG00000114155.1 ENSMUSG00000114155 ENSMUST00000221336 Gm7986 processed_pseudogene Interval_167775 chr9 72665605 72665797 + 0 NA intron (ENSMUSG00000032216.15, intron 1 of 29) protein_coding-intron (ENSMUSG00000032216.15, intron 1 of 28) 3355 ENSMUSG00000032216.15 ENSMUSG00000032216 ENSMUST00000184287 Nedd4 protein_coding Interval_6675 chr1 118673978 118674580 + 0 NA intron (ENSMUSG00000026380.10, intron 13 of 14) protein_coding-intron (ENSMUSG00000026380.10, intron 13 of 14) -7542 ENSMUSG00000088363.1 ENSMUSG00000088363 ENSMUST00000157738 Gm23497 snRNA Interval_155707 chr8 36313736 36313958 + 0 NA Intergenic Intergenic 59786 ENSMUSG00000098154.2 ENSMUSG00000098154 ENSMUST00000183049 Gm5787 processed_pseudogene Interval_109701 chr3 146107354 146108479 + 0 NA exon (ENSMUSG00000043020.13, exon 1 of 23) protein_coding-exon (ENSMUSG00000043020.13, exon 1 of 23) 8338 ENSMUSG00000065937.1 ENSMUSG00000065937 ENSMUST00000084003 Gm25627 snRNA Interval_125044 chr5 64069981 64070561 + 0 NA Intergenic Intergenic 25293 ENSMUSG00000106219.1 ENSMUSG00000106219 ENSMUST00000198687 5830416I19Rik lincRNA Interval_147435 chr7 67183827 67185149 + 0 NA Intergenic Intergenic 4388 ENSMUSG00000109273.1 ENSMUSG00000109273 ENSMUST00000208327 Gm45101 processed_pseudogene Interval_62602 chr15 95289125 95289734 + 0 NA intron (ENSMUSG00000022454.17, intron 15 of 20) protein_coding-intron (ENSMUSG00000022454.17, intron 16 of 20) -127035 ENSMUSG00000100603.6 ENSMUSG00000100603 ENSMUST00000185302 1700129L04Rik sense_intronic Interval_44794 chr13 48679160 48679719 + 0 NA Intergenic Intergenic 16441 ENSMUSG00000021381.4 ENSMUSG00000021381 ENSMUST00000021813 Barx1 protein_coding Interval_27381 chr11 67099929 67101972 + 0 NA exon (ENSMUSG00000020908.14, exon 36 of 40) protein_coding-exon (ENSMUSG00000020908.14, exon 36 of 40) 1146 ENSMUSG00000098855.1 ENSMUSG00000098855 ENSMUST00000184592 Mir6923 miRNA Interval_78051 chr18 7518737 7518960 + 0 NA intron (ENSMUSG00000057440.8, intron 2 of 2) protein_coding-intron (ENSMUSG00000057440.8, intron 2 of 16) -30139 ENSMUSG00000117556.1 ENSMUSG00000117556 ENSMUST00000234527 Gm18948 processed_pseudogene Interval_83325 chr18 84217993 84218426 + 0 NA intron (ENSMUSG00000048410.17, intron 8 of 8) protein_coding-intron (ENSMUSG00000048410.17, intron 2 of 2) 15285 ENSMUSG00000118385.1 ENSMUSG00000118385 ENSMUST00000238064 Gm50311 antisense Interval_89588 chr2 23039249 23040804 + 0 NA promoter-TSS (ENSMUSG00000058835.14) protein_coding-promoter-TSS (ENSMUSG00000058835.14) 193 ENSMUSG00000058835.14 ENSMUSG00000058835 ENSMUST00000154162 Abi1 protein_coding Interval_32888 chr11 112820082 112820467 + 0 NA Intergenic Intergenic -4905 ENSMUSG00000020624.3 ENSMUSG00000020624 ENSMUST00000153429 4933434M16Rik lincRNA Interval_85839 chr19 32268793 32269212 + 0 NA intron (ENSMUSG00000040451.18, intron 2 of 9) protein_coding-intron (ENSMUSG00000040451.18, intron 3 of 9) 7962 ENSMUSG00000040451.18 ENSMUSG00000040451 ENSMUST00000141252 Sgms1 protein_coding Interval_56583 chr14 120499609 120500564 + 0 NA intron (ENSMUSG00000051615.14, intron 1 of 1) protein_coding-intron (ENSMUSG00000051615.14, intron 1 of 1) 21642 ENSMUSG00000051615.14 ENSMUSG00000051615 ENSMUST00000062117 Rap2a protein_coding Interval_146134 chr7 44262656 44263616 + 0 NA TTS (ENSMUSG00000101166.6) processed_transcript-TTS (ENSMUSG00000101166.6) 1606 ENSMUSG00000087376.3 ENSMUSG00000087376 ENSMUST00000147088 Gm15517 protein_coding Interval_73380 chr17 36883528 36884108 + 0 NA intron (ENSMUSG00000073399.9, intron 1 of 1) protein_coding-intron (ENSMUSG00000073399.9, intron 3 of 5) 6305 ENSMUSG00000073399.9 ENSMUSG00000073399 ENSMUST00000172640 Trim40 protein_coding Interval_58733 chr15 37458859 37459255 + 0 NA promoter-TSS (ENSMUSG00000051359.15) protein_coding-promoter-TSS (ENSMUSG00000051359.15) -22 ENSMUSG00000051359.15 ENSMUSG00000051359 ENSMUST00000123317 Ncald protein_coding Interval_64300 chr16 10336460 10338454 + 0 NA intron (ENSMUSG00000116270.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000116270.1, intron 1 of 1) -6172 ENSMUSG00000116270.1 ENSMUSG00000116270 ENSMUST00000229862 Gm1600 lincRNA Interval_46358 chr13 64180345 64181217 + 0 NA intron (ENSMUSG00000021476.9, intron 3 of 3) protein_coding-intron (ENSMUSG00000021476.9, intron 5 of 7) -3722 ENSMUSG00000021476.9 ENSMUSG00000021476 ENSMUST00000223377 Habp4 protein_coding Interval_71921 chr17 27011720 27013058 + 0 NA intron (ENSMUSG00000117819.1, intron 2 of 8) protein_coding-intron (ENSMUSG00000117819.1, intron 2 of 8) 16198 ENSMUSG00000057789.14 ENSMUSG00000057789 ENSMUST00000143158 Bak1 protein_coding Interval_96008 chr2 119139586 119140336 + 0 NA intron (ENSMUSG00000070730.11, intron 2 of 3) protein_coding-intron (ENSMUSG00000070730.11, intron 9 of 12) 7475 ENSMUSG00000070730.11 ENSMUSG00000070730 ENSMUST00000139519 Rmdn3 protein_coding Interval_171103 chr9 114546576 114550071 + 0 NA intron (ENSMUSG00000079259.2, intron 1 of 3) protein_coding-intron (ENSMUSG00000079259.2, intron 1 of 3) 16046 ENSMUSG00000079259.2 ENSMUSG00000079259 ENSMUST00000111816 Trim71 protein_coding Interval_71958 chr17 27222696 27222969 + 0 NA Intergenic Intergenic -5354 ENSMUSG00000118503.1 ENSMUSG00000118503 ENSMUST00000239096 AC141882.1 unitary_pseudogene Interval_95199 chr2 104714333 104714681 + 0 NA exon (ENSMUSG00000074997.3, exon 2 of 2) protein_coding-exon (ENSMUSG00000074997.3, exon 2 of 2) 1872 ENSMUSG00000074997.3 ENSMUSG00000074997 ENSMUST00000099659 Pin1rt1 protein_coding Interval_66429 chr16 33809269 33810249 + 0 NA intron (ENSMUSG00000022824.12, intron 7 of 12) protein_coding-intron (ENSMUSG00000022824.12, intron 6 of 11) -13663 ENSMUSG00000090214.8 ENSMUSG00000090214 ENSMUST00000159501 Gm15657 antisense Interval_159588 chr8 95663076 95663522 + 0 NA Intergenic Intergenic 12095 ENSMUSG00000110701.1 ENSMUSG00000110701 ENSMUST00000212264 Gm6013 processed_pseudogene Interval_78478 chr18 13499032 13500013 + 0 NA intron (ENSMUSG00000117608.1, intron 5 of 5) lincRNA-intron (ENSMUSG00000117608.1, intron 5 of 5) 101878 ENSMUSG00000117608.1 ENSMUSG00000117608 ENSMUST00000234112 AC103362.1 lincRNA Interval_132051 chr5 142495186 142495989 + 0 NA intron (ENSMUSG00000029576.17, intron 6 of 13) protein_coding-intron (ENSMUSG00000029576.17, intron 6 of 14) -8018 ENSMUSG00000029576.17 ENSMUSG00000029576 ENSMUST00000129212 Radil protein_coding Interval_173638 chrX 101343573 101344257 + 0 NA Intergenic Intergenic -39821 ENSMUSG00000047797.14 ENSMUSG00000047797 ENSMUST00000119190 Gjb1 protein_coding Interval_131868 chr5 140486740 140487274 + 0 NA intron (ENSMUSG00000106350.2, intron 15 of 19) protein_coding-intron (ENSMUSG00000106350.2, intron 15 of 19) -18568 ENSMUSG00000036599.10 ENSMUSG00000036599 ENSMUST00000124142 Chst12 protein_coding Interval_132290 chr5 143959452 143959666 + 0 NA promoter-TSS (ENSMUSG00000075569.10) protein_coding-promoter-TSS (ENSMUSG00000075569.10) -133 ENSMUSG00000075569.10 ENSMUSG00000075569 ENSMUST00000164604 Rsph10b protein_coding Interval_98404 chr2 152111843 152112617 + 0 NA TTS (ENSMUSG00000032802.8) protein_coding-TTS (ENSMUSG00000032802.8) 6714 ENSMUSG00000032802.8 ENSMUSG00000032802 ENSMUST00000041500 Srxn1 protein_coding Interval_170081 chr9 104276835 104277980 + 0 NA Intergenic Intergenic 15302 ENSMUSG00000104040.1 ENSMUSG00000104040 ENSMUST00000192580 Gm37563 TEC Interval_8179 chr1 136292484 136292670 + 0 NA intron (ENSMUSG00000041570.14, intron 7 of 17) protein_coding-intron (ENSMUSG00000041570.14, intron 8 of 18) -10827 ENSMUSG00000041570.14 ENSMUSG00000041570 ENSMUST00000194730 Camsap2 protein_coding Interval_119962 chr4 141129714 141130016 + 0 NA intron (ENSMUSG00000040842.17, intron 1 of 3) protein_coding-intron (ENSMUSG00000040842.17, intron 1 of 2) 9862 ENSMUSG00000040842.17 ENSMUSG00000040842 ENSMUST00000128444 Szrd1 protein_coding Interval_124335 chr5 44133279 44133529 + 0 NA promoter-TSS (ENSMUSG00000105373.1) TEC-promoter-TSS (ENSMUSG00000105373.1) -989 ENSMUSG00000105373.1 ENSMUSG00000105373 ENSMUST00000198579 Gm42429 TEC Interval_86774 chr19 43760541 43761766 + 0 NA intron (ENSMUSG00000025193.14, intron 5 of 8) protein_coding-intron (ENSMUSG00000025193.14, intron 5 of 8) 8016 ENSMUSG00000025193.14 ENSMUSG00000025193 ENSMUST00000123564 Cutc protein_coding Interval_64026 chr16 5493314 5495099 + 0 NA Intergenic Intergenic -170049 ENSMUSG00000084573.1 ENSMUSG00000084573 ENSMUST00000122624 n-R5s30 rRNA Interval_76196 chr17 76835184 76835470 + 0 NA Intergenic Intergenic -13837 ENSMUSG00000117498.1 ENSMUSG00000117498 ENSMUST00000234836 Gm18366 processed_pseudogene Interval_99366 chr2 160331796 160332028 + 0 NA intron (ENSMUSG00000074623.4, intron 1 of 2) protein_coding-intron (ENSMUSG00000074623.4, intron 1 of 2) 2250 ENSMUSG00000074623.4 ENSMUSG00000074623 ENSMUST00000099127 Gm826 protein_coding Interval_118153 chr4 129260515 129261209 + 0 NA intron (ENSMUSG00000050390.12, intron 1 of 3) protein_coding-intron (ENSMUSG00000050390.12, intron 1 of 3) -1103 ENSMUSG00000087575.7 ENSMUSG00000087575 ENSMUST00000150171 Gm12976 lincRNA Interval_34849 chr12 12683262 12685650 + 0 NA Intergenic Intergenic -1838 ENSMUSG00000098314.1 ENSMUSG00000098314 ENSMUST00000184748 Gm27952 rRNA Interval_51752 chr14 31954823 31955588 + 0 NA Intergenic Intergenic 48677 ENSMUSG00000046005.4 ENSMUSG00000046005 ENSMUST00000143315 D830044D21Rik lincRNA Interval_17502 chr10 77278775 77279158 + 0 NA Intergenic Intergenic 16518 ENSMUSG00000020260.9 ENSMUSG00000020260 ENSMUST00000218117 Pofut2 protein_coding Interval_124439 chr5 47235239 47235520 + 0 NA Intergenic Intergenic 81728 ENSMUSG00000104660.1 ENSMUSG00000104660 ENSMUST00000196294 Gm43601 TEC Interval_33406 chr11 116395886 116396246 + 0 NA intron (ENSMUSG00000052949.14, intron 2 of 17) protein_coding-intron (ENSMUSG00000052949.14, intron 2 of 18) 13316 ENSMUSG00000081929.1 ENSMUSG00000081929 ENSMUST00000121547 Rps11-ps2 processed_pseudogene Interval_164348 chr9 35569562 35570807 + 0 NA promoter-TSS (ENSMUSG00000074452.13) protein_coding-promoter-TSS (ENSMUSG00000074452.13) -87 ENSMUSG00000050555.9 ENSMUSG00000050555 ENSMUST00000132547 Hyls1 protein_coding Interval_63889 chr16 4281077 4281678 + 0 NA Intergenic Intergenic 39303 ENSMUSG00000084304.1 ENSMUSG00000084304 ENSMUST00000120290 Gm6142 processed_pseudogene Interval_74162 chr17 46852550 46853619 + 0 NA intron (ENSMUSG00000036568.7, intron 1 of 4) protein_coding-intron (ENSMUSG00000036568.7, intron 1 of 4) -20770 ENSMUSG00000036568.7 ENSMUSG00000036568 ENSMUST00000233455 Bicral protein_coding Interval_682 chr1 9857356 9857870 + 0 NA intron (ENSMUSG00000025915.14, intron 1 of 16) protein_coding-intron (ENSMUSG00000025915.14, intron 1 of 16) -23011 ENSMUSG00000088916.1 ENSMUSG00000088916 ENSMUST00000158291 Gm22607 snRNA Interval_72611 chr17 31033277 31033642 + 0 NA Intergenic Intergenic -24268 ENSMUSG00000024030.7 ENSMUSG00000024030 ENSMUST00000236241 Abcg1 protein_coding Interval_126662 chr5 91908384 91908835 + 0 NA Intergenic Intergenic 4794 ENSMUSG00000107301.1 ENSMUSG00000107301 ENSMUST00000202249 Gm43688 lincRNA Interval_147930 chr7 75677095 75677492 + 0 NA TTS (ENSMUSG00000066406.16) protein_coding-TTS (ENSMUSG00000066406.16) 8420 ENSMUSG00000087896.1 ENSMUSG00000087896 ENSMUST00000157271 Gm25282 snRNA Interval_43376 chr13 29855077 29856017 + 0 NA promoter-TSS (ENSMUSG00000006191.17) protein_coding-promoter-TSS (ENSMUSG00000006191.17) -84736 ENSMUSG00000086893.1 ENSMUSG00000086893 ENSMUST00000144277 Gm11365 antisense Interval_107641 chr3 109157087 109157683 + 0 NA intron (ENSMUSG00000040322.10, intron 4 of 4) protein_coding-intron (ENSMUSG00000040322.10, intron 5 of 9) 34223 ENSMUSG00000040322.10 ENSMUSG00000040322 ENSMUST00000140786 Slc25a24 protein_coding Interval_24348 chr11 32601712 32602399 + 0 NA intron (ENSMUSG00000020272.8, intron 10 of 18) protein_coding-intron (ENSMUSG00000020272.8, intron 10 of 18) 13460 ENSMUSG00000020272.8 ENSMUSG00000020272 ENSMUST00000143397 Stk10 protein_coding Interval_116429 chr4 111870399 111870841 + 0 NA Intergenic Intergenic 10007 ENSMUSG00000028544.14 ENSMUSG00000028544 ENSMUST00000131772 Slc5a9 protein_coding Interval_74841 chr17 56822138 56823057 + 0 NA intron (ENSMUSG00000024206.15, intron 1 of 4) protein_coding-intron (ENSMUSG00000024206.15, intron 1 of 17) 8342 ENSMUSG00000024206.15 ENSMUSG00000024206 ENSMUST00000233643 Rfx2 protein_coding Interval_4794 chr1 78734491 78734778 + 0 NA Intergenic Intergenic 44371 ENSMUSG00000032883.15 ENSMUSG00000032883 ENSMUST00000148608 Acsl3 protein_coding Interval_174427 chrX 152179073 152179342 + 0 NA intron (ENSMUSG00000041115.16, intron 1 of 2) protein_coding-intron (ENSMUSG00000041115.16, intron 1 of 2) 34939 ENSMUSG00000041115.16 ENSMUSG00000041115 ENSMUST00000096275 Iqsec2 protein_coding Interval_122436 chr5 22616368 22618202 + 0 NA intron (ENSMUSG00000097207.7, intron 3 of 4) lincRNA-intron (ENSMUSG00000097207.7, intron 3 of 4) -4103 ENSMUSG00000081855.4 ENSMUSG00000081855 ENSMUST00000121001 Rpl17-ps5 processed_pseudogene Interval_82408 chr18 73770731 73771711 + 0 NA intron (ENSMUSG00000024556.4, intron 15 of 15) protein_coding-intron (ENSMUSG00000024556.4, intron 15 of 15) -16742 ENSMUSG00000036941.2 ENSMUSG00000036941 ENSMUST00000041138 Elac1 protein_coding Interval_145338 chr7 34085552 34085831 + 0 NA Intergenic Intergenic -9740 ENSMUSG00000078752.3 ENSMUSG00000078752 ENSMUST00000108083 Scgb1b30 protein_coding Interval_130067 chr5 124050533 124052946 + 0 NA intron (ENSMUSG00000106261.1, intron 3 of 4) lincRNA-intron (ENSMUSG00000106261.1, intron 3 of 4) 613 ENSMUSG00000104818.1 ENSMUSG00000104818 ENSMUST00000199099 Gm43661 lincRNA Interval_16715 chr10 67165720 67166433 + 0 NA intron (ENSMUSG00000037876.17, intron 2 of 25) protein_coding-intron (ENSMUSG00000037876.17, intron 2 of 25) -19672 ENSMUSG00000037876.17 ENSMUSG00000037876 ENSMUST00000173236 Jmjd1c protein_coding Interval_99686 chr2 164199749 164200481 + 0 NA promoter-TSS (ENSMUSG00000051769.2) protein_coding-promoter-TSS (ENSMUSG00000051769.2) 15 ENSMUSG00000051769.2 ENSMUSG00000051769 ENSMUST00000063251 Wfdc15a protein_coding Interval_77689 chr17 94318888 94319299 + 0 NA Intergenic Intergenic 9770 ENSMUSG00000077433.1 ENSMUSG00000077433 ENSMUST00000104245 Gm22593 snRNA Interval_99750 chr2 164698624 164698892 + 0 NA intron (ENSMUSG00000017310.7, intron 1 of 3) protein_coding-intron (ENSMUSG00000017310.7, intron 1 of 3) 257 ENSMUSG00000017310.7 ENSMUSG00000017310 ENSMUST00000017454 Spint4 protein_coding Interval_121763 chr5 7364440 7365376 + 0 NA Intergenic Intergenic -20152 ENSMUSG00000092094.5 ENSMUSG00000092094 ENSMUST00000164784 Zfp804b protein_coding Interval_102133 chr3 18338782 18339919 + 0 NA Intergenic Intergenic 40040 ENSMUSG00000104801.1 ENSMUSG00000104801 ENSMUST00000197097 Gm43834 TEC Interval_49663 chr13 113858395 113859584 + 0 NA intron (ENSMUSG00000042348.10, intron 1 of 3) protein_coding-intron (ENSMUSG00000042348.10, intron 1 of 4) 64396 ENSMUSG00000042348.10 ENSMUSG00000042348 ENSMUST00000224068 Arl15 protein_coding Interval_109558 chr3 144443459 144443645 + 0 NA intron (ENSMUSG00000040151.9, intron 4 of 6) protein_coding-intron (ENSMUSG00000040151.9, intron 4 of 6) -15880 ENSMUSG00000106416.1 ENSMUSG00000106416 ENSMUST00000198953 Gm5857 processed_pseudogene Interval_120584 chr4 149532163 149532897 + 0 NA intron (ENSMUSG00000028988.13, intron 1 of 4) protein_coding-intron (ENSMUSG00000028988.13, intron 1 of 4) -5333 ENSMUSG00000093403.1 ENSMUSG00000093403 ENSMUST00000177217 Mir5616 miRNA Interval_87548 chr19 53378342 53378917 + 0 NA TTS (ENSMUSG00000025024.7) protein_coding-TTS (ENSMUSG00000025024.7) -6863 ENSMUSG00000067085.1 ENSMUSG00000067085 ENSMUST00000086887 Gm10197 protein_coding Interval_43889 chr13 37867036 37867328 + 0 NA intron (ENSMUSG00000039087.17, intron 1 of 3) protein_coding-intron (ENSMUSG00000039087.17, intron 1 of 9) -67392 ENSMUSG00000114370.1 ENSMUSG00000114370 ENSMUST00000224624 Gm46411 antisense Interval_58216 chr15 30978403 30978640 + 0 NA intron (ENSMUSG00000022240.10, intron 18 of 21) protein_coding-intron (ENSMUSG00000022240.10, intron 19 of 22) -15643 ENSMUSG00000115012.1 ENSMUSG00000115012 ENSMUST00000228332 9630009A06Rik antisense Interval_141951 chr6 135798276 135798472 + 0 NA intron (ENSMUSG00000030209.14, intron 6 of 14) protein_coding-intron (ENSMUSG00000030209.14, intron 5 of 13) 57377 ENSMUSG00000089263.1 ENSMUSG00000089263 ENSMUST00000158638 Gm22892 miRNA Interval_79826 chr18 35378315 35379467 + 0 NA intron (ENSMUSG00000024357.10, intron 2 of 2) protein_coding-intron (ENSMUSG00000024357.10, intron 3 of 9) -110213 ENSMUSG00000117731.1 ENSMUSG00000117731 ENSMUST00000237123 Gm50145 antisense Interval_114967 chr4 87778112 87779487 + 0 NA intron (ENSMUSG00000028496.17, intron 5 of 5) protein_coding-intron (ENSMUSG00000028496.17, intron 10 of 10) 27524 ENSMUSG00000028496.17 ENSMUSG00000028496 ENSMUST00000142454 Mllt3 protein_coding Interval_24966 chr11 42188861 42189538 + 0 NA Intergenic Intergenic -7095 ENSMUSG00000010803.13 ENSMUSG00000010803 ENSMUST00000206085 Gabra1 protein_coding Interval_165616 chr9 50437945 50439025 + 0 NA Intergenic Intergenic -56042 ENSMUSG00000032068.14 ENSMUSG00000032068 ENSMUST00000188047 Plet1 protein_coding Interval_56476 chr14 119012546 119013857 + 0 NA intron (ENSMUSG00000042104.18, intron 31 of 38) protein_coding-intron (ENSMUSG00000042104.18, intron 31 of 38) 22838 ENSMUSG00000042104.18 ENSMUSG00000042104 ENSMUST00000136924 Uggt2 protein_coding Interval_166014 chr9 55466713 55467900 + 0 NA intron (ENSMUSG00000032314.14, intron 9 of 11) protein_coding-intron (ENSMUSG00000032314.14, intron 9 of 11) 44814 ENSMUSG00000032314.14 ENSMUSG00000032314 ENSMUST00000142587 Etfa protein_coding Interval_130295 chr5 125475301 125476551 + 0 NA exon (ENSMUSG00000029482.4, exon 1 of 18) protein_coding-exon (ENSMUSG00000029482.4, exon 1 of 18) -3451 ENSMUSG00000098350.1 ENSMUSG00000098350 ENSMUST00000184258 Gm27551 miRNA Interval_118744 chr4 133489901 133490105 + 0 NA Intergenic Intergenic -7477 ENSMUSG00000086850.1 ENSMUSG00000086850 ENSMUST00000132840 Gm13257 antisense Interval_16436 chr10 62856850 62857468 + 0 NA TTS (ENSMUSG00000112309.1) TEC-TTS (ENSMUSG00000112309.1) 2835 ENSMUSG00000112309.1 ENSMUSG00000112309 ENSMUST00000220243 Gm48353 TEC Interval_11248 chr1 180458396 180458966 + 0 NA intron (ENSMUSG00000053963.7, intron 1 of 2) protein_coding-intron (ENSMUSG00000053963.7, intron 1 of 3) 7200 ENSMUSG00000053963.7 ENSMUSG00000053963 ENSMUST00000211782 Stum protein_coding Interval_13884 chr10 24216450 24216880 + 0 NA Intergenic Intergenic -6880 ENSMUSG00000020000.7 ENSMUSG00000020000 ENSMUST00000154916 Moxd1 protein_coding Interval_51797 chr14 32247169 32247478 + 0 NA intron (ENSMUSG00000021911.16, intron 6 of 14) protein_coding-intron (ENSMUSG00000021911.16, intron 9 of 17) 16477 ENSMUSG00000115833.1 ENSMUSG00000115833 ENSMUST00000228947 Gm49196 processed_pseudogene Interval_109057 chr3 135501875 135502091 + 0 NA intron (ENSMUSG00000028164.15, intron 1 of 2) protein_coding-intron (ENSMUSG00000028164.15, intron 1 of 16) 6330 ENSMUSG00000083045.1 ENSMUSG00000083045 ENSMUST00000120489 Gm16100 processed_pseudogene Interval_38941 chr12 83987538 83988807 + 0 NA exon (ENSMUSG00000021226.7, exon 1 of 3) protein_coding-exon (ENSMUSG00000021226.7, exon 1 of 3) 311 ENSMUSG00000021226.7 ENSMUSG00000021226 ENSMUST00000021649 Acot2 protein_coding Interval_100754 chr2 172369413 172371466 + 0 NA promoter-TSS (ENSMUSG00000027496.15) protein_coding-promoter-TSS (ENSMUSG00000027496.15) -242 ENSMUSG00000027498.14 ENSMUSG00000027498 ENSMUST00000116375 Cstf1 protein_coding Interval_156544 chr8 50580668 50581157 + 0 NA Intergenic Intergenic 17671 ENSMUSG00000087769.1 ENSMUSG00000087769 ENSMUST00000157144 Gm23986 snRNA Interval_163936 chr9 29320230 29320488 + 0 NA intron (ENSMUSG00000059974.10, intron 2 of 2) protein_coding-intron (ENSMUSG00000059974.10, intron 2 of 7) 260560 ENSMUSG00000085449.1 ENSMUSG00000085449 ENSMUST00000132097 Gm15520 antisense Interval_97023 chr2 130597260 130597888 + 0 NA intron (ENSMUSG00000027300.10, intron 4 of 5) protein_coding-intron (ENSMUSG00000027300.10, intron 4 of 5) -15020 ENSMUSG00000037727.6 ENSMUSG00000037727 ENSMUST00000046001 Avp protein_coding Interval_16014 chr10 60125655 60126866 + 0 NA promoter-TSS (ENSMUSG00000105468.1) miRNA-promoter-TSS (ENSMUSG00000105468.1) -516 ENSMUSG00000105468.1 ENSMUSG00000105468 ENSMUST00000198998 Mir6906 miRNA Interval_26048 chr11 53749522 53750284 + 0 NA Intergenic Intergenic 13751 ENSMUSG00000099153.1 ENSMUSG00000099153 ENSMUST00000184599 Mir7671 miRNA Interval_109916 chr3 151437244 151438294 + 0 NA promoter-TSS (ENSMUSG00000039167.12) protein_coding-promoter-TSS (ENSMUSG00000039167.12) -127 ENSMUSG00000039167.12 ENSMUSG00000039167 ENSMUST00000198893 Adgrl4 protein_coding Interval_5104 chr1 85679946 85680332 + 0 NA TTS (ENSMUSG00000026222.16) protein_coding-TTS (ENSMUSG00000026222.16) 5257 ENSMUSG00000064414.1 ENSMUSG00000064414 ENSMUST00000082480 n-R5s215 rRNA Interval_156790 chr8 59983605 59983886 + 0 NA Intergenic Intergenic -95845 ENSMUSG00000065727.1 ENSMUSG00000065727 ENSMUST00000083793 Gm26164 snRNA Interval_39233 chr12 86082433 86083183 + 0 NA intron (ENSMUSG00000007867.9, intron 1 of 8) protein_coding-intron (ENSMUSG00000007867.9, intron 1 of 7) 200 ENSMUSG00000007867.9 ENSMUSG00000007867 ENSMUST00000220711 Ift43 protein_coding Interval_165076 chr9 44423584 44424080 + 0 NA promoter-TSS (ENSMUSG00000111849.1) lincRNA-promoter-TSS (ENSMUSG00000111849.1) -441 ENSMUSG00000111849.1 ENSMUSG00000111849 ENSMUST00000213494 Gm47186 lincRNA Interval_51356 chr14 26981069 26982381 + 0 NA Intergenic Intergenic -11220 ENSMUSG00000040760.11 ENSMUSG00000040760 ENSMUST00000142261 Appl1 protein_coding Interval_91975 chr2 52112044 52112345 + 0 NA exon (ENSMUSG00000036202.16, exon 1 of 6) protein_coding-exon (ENSMUSG00000036202.16, exon 1 of 6) 61 ENSMUSG00000036202.16 ENSMUSG00000036202 ENSMUST00000152178 Rif1 protein_coding Interval_78820 chr18 20803889 20804592 + 0 NA Intergenic Intergenic 40352 ENSMUSG00000088549.1 ENSMUSG00000088549 ENSMUST00000157924 Gm24959 snRNA Interval_109083 chr3 135630597 135631378 + 0 NA intron (ENSMUSG00000028163.17, intron 4 of 22) protein_coding-intron (ENSMUSG00000028163.17, intron 6 of 24) 23579 ENSMUSG00000106149.1 ENSMUSG00000106149 ENSMUST00000196513 Gm43430 TEC Interval_141509 chr6 128773320 128773803 + 0 NA Intergenic Intergenic 15654 ENSMUSG00000030325.16 ENSMUSG00000030325 ENSMUST00000174865 Klrb1c protein_coding Interval_20335 chr10 116962342 116963395 + 0 NA exon (ENSMUSG00000112627.1, exon 4 of 4) bidirectional_promoter_lncRNA-exon (ENSMUSG00000112627.1, exon 4 of 4) -1872 ENSMUSG00000031294.9 ENSMUSG00000031294 ENSMUST00000033651 D630029K05Rik lincRNA Interval_1859 chr1 34177649 34178772 + 0 NA promoter-TSS (ENSMUSG00000096992.3) processed_transcript-promoter-TSS (ENSMUSG00000096992.3) 236 ENSMUSG00000096992.3 ENSMUSG00000096992 ENSMUST00000187268 Gm26788 processed_transcript Interval_93109 chr2 70292478 70293337 + 0 NA intron (ENSMUSG00000042064.13, intron 25 of 33) protein_coding-intron (ENSMUSG00000042064.13, intron 26 of 34) -166075 ENSMUSG00000047965.9 ENSMUSG00000047965 ENSMUST00000140507 Rpl9-ps7 processed_pseudogene Interval_78979 chr18 23526137 23526588 + 0 NA intron (ENSMUSG00000024302.16, intron 2 of 4) protein_coding-intron (ENSMUSG00000024302.16, intron 2 of 11) 29527 ENSMUSG00000024302.16 ENSMUSG00000024302 ENSMUST00000222726 Dtna protein_coding Interval_93327 chr2 71972210 71972436 + 0 NA Intergenic Intergenic 16270 ENSMUSG00000087345.1 ENSMUSG00000087345 ENSMUST00000133981 Gm13746 lincRNA Interval_121208 chr4 154065109 154065937 + 0 NA intron (ENSMUSG00000029026.17, intron 6 of 13) protein_coding-intron (ENSMUSG00000029026.17, intron 4 of 9) -17395 ENSMUSG00000082073.1 ENSMUSG00000082073 ENSMUST00000117605 Gm13114 processed_pseudogene Interval_46899 chr13 73285412 73285662 + 0 NA Intergenic Intergenic 12307 ENSMUSG00000113485.1 ENSMUSG00000113485 ENSMUST00000223190 Gm48000 TEC Interval_57234 chr15 8031377 8031712 + 0 NA intron (ENSMUSG00000039828.7, intron 8 of 17) protein_coding-intron (ENSMUSG00000039828.7, intron 8 of 17) 56216 ENSMUSG00000098281.1 ENSMUSG00000098281 ENSMUST00000184975 Gm27529 miRNA Interval_136574 chr6 55841107 55841538 + 0 NA intron (ENSMUSG00000037973.6, intron 1 of 13) protein_coding-intron (ENSMUSG00000037973.6, intron 1 of 13) -45503 ENSMUSG00000037973.6 ENSMUSG00000037973 ENSMUST00000169699 Itprid1 protein_coding Interval_166790 chr9 62726316 62727136 + 0 NA intron (ENSMUSG00000032243.8, intron 2 of 27) protein_coding-intron (ENSMUSG00000032243.8, intron 2 of 29) 48866 ENSMUSG00000032243.8 ENSMUSG00000032243 ENSMUST00000159012 Itga11 protein_coding Interval_54560 chr14 70675532 70675849 + 0 NA TTS (ENSMUSG00000115387.1) processed_pseudogene-TTS (ENSMUSG00000115387.1) 1240 ENSMUSG00000115387.1 ENSMUSG00000115387 ENSMUST00000228317 Gm49244 processed_pseudogene Interval_153510 chr7 145302374 145303282 + 0 NA intron (ENSMUSG00000031070.15, intron 1 of 3) protein_coding-intron (ENSMUSG00000031070.15, intron 1 of 2) 1929 ENSMUSG00000031070.15 ENSMUSG00000031070 ENSMUST00000117718 Mrgprf protein_coding Interval_82870 chr18 77613600 77613891 + 0 NA Intergenic Intergenic -68869 ENSMUSG00000077593.1 ENSMUSG00000077593 ENSMUST00000104405 Gm26014 snoRNA Interval_154984 chr8 25485432 25485742 + 0 NA intron (ENSMUSG00000110063.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000110063.1, intron 1 of 2) 1998 ENSMUSG00000110063.1 ENSMUSG00000110063 ENSMUST00000211266 Gm31045 lincRNA Interval_11251 chr1 180471327 180471876 + 0 NA intron (ENSMUSG00000053963.7, intron 1 of 2) protein_coding-intron (ENSMUSG00000053963.7, intron 1 of 3) 5486 ENSMUSG00000104210.1 ENSMUSG00000104210 ENSMUST00000191641 Gm37984 TEC Interval_147300 chr7 65663806 65664310 + 0 NA intron (ENSMUSG00000030515.9, intron 9 of 12) protein_coding-intron (ENSMUSG00000030515.9, intron 9 of 18) 5026 ENSMUSG00000030515.9 ENSMUSG00000030515 ENSMUST00000127354 Tarsl2 protein_coding Interval_1038 chr1 14288007 14288827 + 0 NA intron (ENSMUSG00000025932.14, intron 1 of 6) protein_coding-intron (ENSMUSG00000025932.14, intron 3 of 17) 16153 ENSMUSG00000025932.14 ENSMUSG00000025932 ENSMUST00000185329 Eya1 protein_coding Interval_38664 chr12 80922788 80923258 + 0 NA TTS (ENSMUSG00000101912.1) lincRNA-TTS (ENSMUSG00000101912.1) 1426 ENSMUSG00000101912.1 ENSMUSG00000101912 ENSMUST00000190431 1700052I22Rik lincRNA Interval_131858 chr5 140411289 140411799 + 0 NA Intergenic Intergenic -15795 ENSMUSG00000098319.1 ENSMUSG00000098319 ENSMUST00000184833 Mir7038 miRNA Interval_37181 chr12 59218716 59220407 + 0 NA promoter-TSS (ENSMUSG00000035329.7) protein_coding-promoter-TSS (ENSMUSG00000035329.7) -15125 ENSMUSG00000035329.7 ENSMUSG00000035329 ENSMUST00000161351 Fbxo33 protein_coding Interval_75066 chr17 62805105 62805827 + 0 NA intron (ENSMUSG00000048915.12, intron 1 of 3) protein_coding-intron (ENSMUSG00000048915.12, intron 1 of 4) 75678 ENSMUSG00000048915.12 ENSMUSG00000048915 ENSMUST00000078839 Efna5 protein_coding Interval_137937 chr6 83523355 83523860 + 0 NA intron (ENSMUSG00000059430.14, intron 3 of 6) protein_coding-intron (ENSMUSG00000059430.14, intron 3 of 8) 12616 ENSMUSG00000059430.14 ENSMUSG00000059430 ENSMUST00000152029 Actg2 protein_coding Interval_104209 chr3 60575032 60575467 + 0 NA intron (ENSMUSG00000027763.13, intron 2 of 3) protein_coding-intron (ENSMUSG00000027763.13, intron 2 of 9) -29135 ENSMUSG00000104125.1 ENSMUSG00000104125 ENSMUST00000195434 Gm37488 TEC Interval_168049 chr9 75610564 75611740 + 0 NA promoter-TSS (ENSMUSG00000032186.15) protein_coding-promoter-TSS (ENSMUSG00000032186.15) -12 ENSMUSG00000032186.15 ENSMUSG00000032186 ENSMUST00000217233 Tmod2 protein_coding Interval_150899 chr7 116240986 116241826 + 0 NA intron (ENSMUSG00000045659.18, intron 3 of 18) protein_coding-intron (ENSMUSG00000045659.18, intron 3 of 26) 41337 ENSMUSG00000108650.1 ENSMUSG00000108650 ENSMUST00000205675 Gm44867 sense_intronic Interval_128035 chr5 110428864 110429676 + 0 NA TTS (ENSMUSG00000043323.17) protein_coding-TTS (ENSMUSG00000043323.17) -18719 ENSMUSG00000105482.1 ENSMUSG00000105482 ENSMUST00000196305 Gm42596 antisense Interval_135815 chr6 47526493 47526791 + 0 NA TTS (ENSMUSG00000029686.15) protein_coding-TTS (ENSMUSG00000029686.15) 6946 ENSMUSG00000029686.15 ENSMUSG00000029686 ENSMUST00000149531 Cul1 protein_coding Interval_167788 chr9 72706865 72707901 + 0 NA intron (ENSMUSG00000032216.15, intron 1 of 20) protein_coding-intron (ENSMUSG00000032216.15, intron 6 of 28) -9577 ENSMUSG00000104066.1 ENSMUSG00000104066 ENSMUST00000195098 Gm37955 TEC Interval_158469 chr8 83899048 83901023 + 0 NA promoter-TSS (ENSMUSG00000013033.16) protein_coding-promoter-TSS (ENSMUSG00000013033.16) -700 ENSMUSG00000013033.16 ENSMUSG00000013033 ENSMUST00000131018 Adgrl1 protein_coding Interval_174226 chrX 140406353 140406878 + 0 NA intron (ENSMUSG00000042425.18, intron 12 of 14) protein_coding-intron (ENSMUSG00000042425.18, intron 12 of 14) 39767 ENSMUSG00000082031.1 ENSMUSG00000082031 ENSMUST00000117903 Gm8097 processed_pseudogene Interval_91534 chr2 41521420 41522264 + 0 NA intron (ENSMUSG00000049252.17, intron 4 of 62) protein_coding-intron (ENSMUSG00000049252.17, intron 7 of 90) 466987 ENSMUSG00000081999.3 ENSMUSG00000081999 ENSMUST00000120980 Gm13461 processed_pseudogene Interval_150197 chr7 107878732 107879095 + 0 NA Intergenic Intergenic 15874 ENSMUSG00000066245.5 ENSMUSG00000066245 ENSMUST00000122364 Gm10156 processed_pseudogene Interval_120306 chr4 145323118 145324085 + 0 NA Intergenic Intergenic -8437 ENSMUSG00000028602.12 ENSMUSG00000028602 ENSMUST00000123027 Tnfrsf8 protein_coding Interval_69481 chr16 93802553 93802835 + 0 NA intron (ENSMUSG00000022946.10, intron 2 of 3) protein_coding-intron (ENSMUSG00000022946.10, intron 31 of 36) -7793 ENSMUSG00000097768.2 ENSMUSG00000097768 ENSMUST00000180967 2310043M15Rik antisense Interval_162380 chr8 127588354 127589837 + 0 NA intron (ENSMUSG00000025812.18, intron 1 of 3) protein_coding-intron (ENSMUSG00000025812.18, intron 21 of 23) -8611 ENSMUSG00000088580.1 ENSMUSG00000088580 ENSMUST00000157955 Gm22968 rRNA Interval_6317 chr1 105826816 105827001 + 0 NA intron (ENSMUSG00000026321.7, intron 8 of 9) protein_coding-intron (ENSMUSG00000026321.7, intron 8 of 9) 46158 ENSMUSG00000026321.7 ENSMUSG00000026321 ENSMUST00000187658 Tnfrsf11a protein_coding Interval_170719 chr9 110306869 110308160 + 0 NA intron (ENSMUSG00000054836.12, intron 1 of 4) protein_coding-intron (ENSMUSG00000054836.12, intron 1 of 7) 2341 ENSMUSG00000054836.12 ENSMUSG00000054836 ENSMUST00000196855 Elp6 protein_coding Interval_36932 chr12 55446233 55447385 + 0 NA Intergenic Intergenic 45001 ENSMUSG00000021025.8 ENSMUSG00000021025 ENSMUST00000219869 Nfkbia protein_coding Interval_77574 chr17 92132878 92133097 + 0 NA Intergenic Intergenic -48078 ENSMUSG00000117584.1 ENSMUSG00000117584 ENSMUST00000234894 Gm49994 processed_pseudogene Interval_150967 chr7 116949272 116949468 + 0 NA Intergenic Intergenic 3325 ENSMUSG00000064971.1 ENSMUSG00000064971 ENSMUST00000083037 Gm26054 snRNA Interval_138110 chr6 85239057 85239601 + 0 NA intron (ENSMUSG00000033720.12, intron 2 of 4) protein_coding-intron (ENSMUSG00000033720.12, intron 10 of 13) 45810 ENSMUSG00000033726.8 ENSMUSG00000033726 ENSMUST00000173919 Emx1 protein_coding Interval_174587 chrX 159516442 159518220 + 0 NA Intergenic Intergenic -50207 ENSMUSG00000044150.12 ENSMUSG00000044150 ENSMUST00000154694 Bclaf3 protein_coding Interval_11639 chr1 183697026 183698004 + 0 NA Intergenic Intergenic -15384 ENSMUSG00000090533.2 ENSMUSG00000090533 ENSMUST00000172123 Gm8214 processed_pseudogene Interval_69342 chr16 92348513 92349386 + 0 NA exon (ENSMUSG00000039639.7, exon 2 of 2) protein_coding-exon (ENSMUSG00000039639.7, exon 2 of 2) 9925 ENSMUSG00000039639.7 ENSMUSG00000039639 ENSMUST00000166707 Kcne1 protein_coding Interval_155800 chr8 38747373 38747560 + 0 NA Intergenic Intergenic -8914 ENSMUSG00000118594.1 ENSMUSG00000118594 ENSMUST00000239372 AC163680.1 unprocessed_pseudogene Interval_60670 chr15 76057446 76058018 + 0 NA exon (ENSMUSG00000022568.17, exon 23 of 38) protein_coding-exon (ENSMUSG00000022568.17, exon 23 of 38) 7156 ENSMUSG00000098451.1 ENSMUSG00000098451 ENSMUST00000185092 Mir6952 miRNA Interval_14702 chr10 39163329 39163719 + 0 NA intron (ENSMUSG00000062074.7, intron 1 of 4) protein_coding-intron (ENSMUSG00000062074.7, intron 1 of 4) 270 ENSMUSG00000062074.7 ENSMUSG00000062074 ENSMUST00000076713 Ccn6 protein_coding Interval_69960 chr17 3521881 3522383 + 0 NA intron (ENSMUSG00000036983.7, intron 5 of 6) protein_coding-intron (ENSMUSG00000036983.7, intron 5 of 6) -10422 ENSMUSG00000091530.2 ENSMUSG00000091530 ENSMUST00000168560 Cldn20 protein_coding Interval_48688 chr13 101301315 101301794 + 0 NA intron (ENSMUSG00000100733.2, intron 5 of 8) lincRNA-intron (ENSMUSG00000100733.2, intron 5 of 8) -47198 ENSMUSG00000114295.1 ENSMUSG00000114295 ENSMUST00000226018 Gm2534 processed_pseudogene Interval_78037 chr18 7236456 7236725 + 0 NA intron (ENSMUSG00000061802.6, intron 2 of 3) protein_coding-intron (ENSMUSG00000061802.6, intron 11 of 20) -52517 ENSMUSG00000061802.6 ENSMUSG00000061802 ENSMUST00000234196 Armc4 protein_coding Interval_171253 chr9 115680986 115681710 + 0 NA intron (ENSMUSG00000110905.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000110905.1, intron 1 of 1) 605 ENSMUSG00000110905.1 ENSMUSG00000110905 ENSMUST00000215982 Gm48007 lincRNA Interval_120325 chr4 147885324 147886970 + 0 NA intron (ENSMUSG00000029020.13, intron 3 of 3) protein_coding-intron (ENSMUSG00000029020.13, intron 10 of 19) -7526 ENSMUSG00000083340.1 ENSMUSG00000083340 ENSMUST00000118348 Gm13156 processed_pseudogene Interval_144686 chr7 27525723 27526974 + 0 NA promoter-TSS (ENSMUSG00000040424.15) protein_coding-promoter-TSS (ENSMUSG00000040424.15) 3081 ENSMUSG00000040424.15 ENSMUSG00000040424 ENSMUST00000037134 Hipk4 protein_coding Interval_33586 chr11 117373258 117374778 + 0 NA Intergenic Intergenic -40371 ENSMUSG00000086588.1 ENSMUSG00000086588 ENSMUST00000124901 Gm11729 lincRNA Interval_40893 chr12 109178805 109179021 + 0 NA Intergenic Intergenic 80686 ENSMUSG00000113306.1 ENSMUSG00000113306 ENSMUST00000223357 Mif-ps7 processed_pseudogene Interval_64496 chr16 12753630 12754879 + 0 NA intron (ENSMUSG00000116520.1, intron 4 of 11) lincRNA-intron (ENSMUSG00000116520.1, intron 4 of 11) 7112 ENSMUSG00000091416.2 ENSMUSG00000091416 ENSMUST00000171185 Gm6327 processed_pseudogene Interval_10568 chr1 171925211 171926140 + 0 NA intron (ENSMUSG00000015314.10, intron 1 of 1) protein_coding-intron (ENSMUSG00000015314.10, intron 1 of 7) -6319 ENSMUSG00000104413.1 ENSMUSG00000104413 ENSMUST00000191636 Gm37065 antisense Interval_140815 chr6 121546768 121547872 + 0 NA TTS (ENSMUSG00000108223.1) processed_pseudogene-TTS (ENSMUSG00000108223.1) 540 ENSMUSG00000108223.1 ENSMUSG00000108223 ENSMUST00000203893 Gm43933 processed_pseudogene Interval_52693 chr14 48661410 48662995 + 0 NA promoter-TSS (ENSMUSG00000021848.16) protein_coding-promoter-TSS (ENSMUSG00000021848.16) 5316 ENSMUSG00000021848.16 ENSMUSG00000021848 ENSMUST00000228512 Otx2 protein_coding Interval_137453 chr6 72543973 72544885 + 0 NA promoter-TSS (ENSMUSG00000056737.14) protein_coding-promoter-TSS (ENSMUSG00000056737.14) -5029 ENSMUSG00000056737.14 ENSMUSG00000056737 ENSMUST00000127770 Capg protein_coding Interval_34061 chr11 120251568 120253640 + 0 NA intron (ENSMUSG00000039741.15, intron 2 of 27) protein_coding-intron (ENSMUSG00000039741.15, intron 2 of 27) -16482 ENSMUSG00000085501.1 ENSMUSG00000085501 ENSMUST00000136542 Gm11772 antisense Interval_131942 chr5 140941593 140941838 + 0 NA intron (ENSMUSG00000036526.8, intron 1 of 2) protein_coding-intron (ENSMUSG00000036526.8, intron 1 of 24) 58756 ENSMUSG00000036526.8 ENSMUSG00000036526 ENSMUST00000199091 Card11 protein_coding Interval_154131 chr8 12940535 12941644 + 0 NA intron (ENSMUSG00000031442.21, intron 1 of 2) protein_coding-intron (ENSMUSG00000031442.21, intron 2 of 29) -6852 ENSMUSG00000105030.1 ENSMUSG00000105030 ENSMUST00000200573 Gm38671 miRNA Interval_15346 chr10 44887062 44887759 + 0 NA Intergenic Intergenic -20624 ENSMUSG00000111868.1 ENSMUSG00000111868 ENSMUST00000215415 Gm47398 lincRNA Interval_81277 chr18 57330369 57331057 + 0 NA Intergenic Intergenic -3592 ENSMUSG00000117802.1 ENSMUSG00000117802 ENSMUST00000235699 Gm18929 unprocessed_pseudogene Interval_88257 chr19 61268398 61270064 + 0 NA Intergenic Intergenic -11442 ENSMUSG00000117951.1 ENSMUSG00000117951 ENSMUST00000237978 Gm50357 processed_pseudogene Interval_127576 chr5 105498510 105499678 + 0 NA Intergenic Intergenic 3624 ENSMUSG00000105826.1 ENSMUSG00000105826 ENSMUST00000196534 Gm42141 TEC Interval_31571 chr11 101446347 101446741 + 0 NA Intergenic Intergenic 1670 ENSMUSG00000063316.13 ENSMUSG00000063316 ENSMUST00000152162 Rpl27 protein_coding Interval_169796 chr9 101502231 101503018 + 0 NA Intergenic Intergenic -53271 ENSMUSG00000061486.7 ENSMUSG00000061486 ENSMUST00000075243 Gm5161 processed_pseudogene Interval_156244 chr8 46499406 46499862 + 0 NA intron (ENSMUSG00000018796.13, intron 3 of 5) protein_coding-intron (ENSMUSG00000018796.13, intron 2 of 20) -26044 ENSMUSG00000109807.1 ENSMUSG00000109807 ENSMUST00000211328 Gm45244 TEC Interval_35218 chr12 18386925 18388117 + 0 NA promoter-TSS (ENSMUSG00000113402.1) processed_pseudogene-promoter-TSS (ENSMUSG00000113402.1) -234 ENSMUSG00000113402.1 ENSMUSG00000113402 ENSMUST00000221998 Gm40848 processed_pseudogene Interval_139192 chr6 97063584 97064048 + 0 NA Intergenic Intergenic -3423 ENSMUSG00000046500.8 ENSMUSG00000046500 ENSMUST00000203930 Tafa4 protein_coding Interval_48149 chr13 96684789 96685519 + 0 NA Intergenic Intergenic -7031 ENSMUSG00000113351.1 ENSMUSG00000113351 ENSMUST00000221591 Gm48575 processed_pseudogene Interval_49678 chr13 113942198 113942450 + 0 NA intron (ENSMUSG00000042348.10, intron 4 of 5) protein_coding-intron (ENSMUSG00000042348.10, intron 3 of 4) 147731 ENSMUSG00000042348.10 ENSMUSG00000042348 ENSMUST00000224068 Arl15 protein_coding Interval_37558 chr12 69863632 69864014 + 0 NA intron (ENSMUSG00000034761.15, intron 1 of 29) protein_coding-intron (ENSMUSG00000034761.15, intron 2 of 30) 29280 ENSMUSG00000034761.15 ENSMUSG00000034761 ENSMUST00000147451 Map4k5 protein_coding Interval_21195 chr10 127147207 127147870 + 0 NA Intergenic Intergenic -8921 ENSMUSG00000088672.1 ENSMUSG00000088672 ENSMUST00000158047 Gm23664 snRNA Interval_10987 chr1 177766544 177767321 + 0 NA intron (ENSMUSG00000015961.8, intron 1 of 1) protein_coding-intron (ENSMUSG00000015961.8, intron 12 of 12) -19924 ENSMUSG00000089657.1 ENSMUSG00000089657 ENSMUST00000161442 Gm16585 processed_pseudogene Interval_127818 chr5 108022041 108022488 + 0 NA Intergenic Intergenic 20004 ENSMUSG00000084855.2 ENSMUSG00000084855 ENSMUST00000117916 Gm9850 processed_pseudogene Interval_109756 chr3 146643917 146644266 + 0 NA intron (ENSMUSG00000085810.7, intron 1 of 3) antisense-intron (ENSMUSG00000085810.7, intron 1 of 3) -4518 ENSMUSG00000085810.7 ENSMUSG00000085810 ENSMUST00000154128 Gm16325 antisense Interval_16937 chr10 70021772 70021976 + 0 NA intron (ENSMUSG00000069601.14, intron 42 of 42) protein_coding-intron (ENSMUSG00000069601.14, intron 19 of 19) -153137 ENSMUSG00000048701.13 ENSMUSG00000048701 ENSMUST00000135607 Ccdc6 protein_coding Interval_31073 chr11 97994060 97996266 + 0 NA intron (ENSMUSG00000038352.15, intron 1 of 2) protein_coding-intron (ENSMUSG00000038352.15, intron 1 of 5) 766 ENSMUSG00000038352.15 ENSMUSG00000038352 ENSMUST00000107563 Arl5c protein_coding Interval_142050 chr6 136793678 136794332 + 0 NA Intergenic Intergenic 10410 ENSMUSG00000096010.2 ENSMUSG00000096010 ENSMUST00000179285 H4f16 protein_coding Interval_71903 chr17 26906964 26907529 + 0 NA intron (ENSMUSG00000118147.1, intron 1 of 4) sense_overlapping-intron (ENSMUSG00000118147.1, intron 1 of 4) -9845 ENSMUSG00000024301.10 ENSMUSG00000024301 ENSMUST00000235206 Kifc5b protein_coding Interval_149056 chr7 92740900 92742135 + 0 NA promoter-TSS (ENSMUSG00000030643.14) protein_coding-promoter-TSS (ENSMUSG00000030643.14) -49 ENSMUSG00000074024.5 ENSMUSG00000074024 ENSMUST00000182408 4632427E13Rik bidirectional_promoter_lncRNA Interval_26713 chr11 59921212 59922161 + 0 NA intron (ENSMUSG00000085551.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000085551.1, intron 1 of 1) 187 ENSMUSG00000085551.1 ENSMUSG00000085551 ENSMUST00000130205 1810063I02Rik lincRNA Interval_56287 chr14 116465211 116466118 + 0 NA intron (ENSMUSG00000022112.14, intron 7 of 7) protein_coding-intron (ENSMUSG00000022112.14, intron 7 of 7) -284551 ENSMUSG00000104296.1 ENSMUSG00000104296 ENSMUST00000193536 Gm38045 TEC Interval_21799 chr11 4432740 4433334 + 0 NA intron (ENSMUSG00000020419.11, intron 2 of 4) protein_coding-intron (ENSMUSG00000020419.11, intron 2 of 11) -5775 ENSMUSG00000020419.11 ENSMUSG00000020419 ENSMUST00000124249 Hormad2 protein_coding Interval_29261 chr11 82416147 82416349 + 0 NA intron (ENSMUSG00000020701.12, intron 1 of 1) protein_coding-intron (ENSMUSG00000020701.12, intron 1 of 8) -22009 ENSMUSG00000020701.12 ENSMUSG00000020701 ENSMUST00000202598 Tmem132e protein_coding Interval_23755 chr11 25914174 25914825 + 0 NA intron (ENSMUSG00000032985.15, intron 2 of 2) protein_coding-intron (ENSMUSG00000032985.15, intron 2 of 6) -145358 ENSMUSG00000032985.15 ENSMUSG00000032985 ENSMUST00000125987 5730522E02Rik protein_coding Interval_39551 chr12 90413967 90415378 + 0 NA Intergenic Intergenic -5848 ENSMUSG00000113001.1 ENSMUSG00000113001 ENSMUST00000220610 Gm40538 lincRNA Interval_108652 chr3 129803525 129804409 + 0 NA promoter-TSS (ENSMUSG00000093865.7) protein_coding-promoter-TSS (ENSMUSG00000093865.7) -3446 ENSMUSG00000093865.7 ENSMUSG00000093865 ENSMUST00000188978 Lrit3 protein_coding Interval_100060 chr2 166844962 166846249 + 0 NA intron (ENSMUSG00000074582.10, intron 5 of 5) protein_coding-intron (ENSMUSG00000074582.10, intron 8 of 38) 17948 ENSMUSG00000074582.10 ENSMUSG00000074582 ENSMUST00000144847 Arfgef2 protein_coding Interval_27054 chr11 62582346 62583406 + 0 NA exon (ENSMUSG00000018507.16, exon 5 of 16) protein_coding-exon (ENSMUSG00000018507.16, exon 5 of 16) 1609 ENSMUSG00000018507.16 ENSMUSG00000018507 ENSMUST00000153486 Trpv2 protein_coding Interval_72150 chr17 28291528 28291747 + 0 NA intron (ENSMUSG00000002250.16, intron 3 of 5) protein_coding-intron (ENSMUSG00000002250.16, intron 3 of 7) -21940 ENSMUSG00000007570.16 ENSMUSG00000007570 ENSMUST00000156569 Fance protein_coding Interval_40413 chr12 104718687 104719455 + 0 NA intron (ENSMUSG00000041415.10, intron 8 of 26) protein_coding-intron (ENSMUSG00000041415.10, intron 8 of 26) 2981 ENSMUSG00000041415.10 ENSMUSG00000041415 ENSMUST00000222002 Dicer1 protein_coding Interval_106907 chr3 101778560 101779735 + 0 NA Intergenic Intergenic 31023 ENSMUSG00000105642.1 ENSMUSG00000105642 ENSMUST00000199434 Gm43134 lincRNA Interval_137777 chr6 82372141 82372423 + 0 NA Intergenic Intergenic -30052 ENSMUSG00000030043.11 ENSMUSG00000030043 ENSMUST00000203775 Tacr1 protein_coding Interval_52732 chr14 49155309 49156048 + 0 NA Intergenic Intergenic -16548 ENSMUSG00000036282.15 ENSMUSG00000036282 ENSMUST00000134984 Naa30 protein_coding Interval_15798 chr10 57029271 57030013 + 0 NA Intergenic Intergenic -47410 ENSMUSG00000112327.1 ENSMUSG00000112327 ENSMUST00000220080 Gm36827 lincRNA Interval_7421 chr1 131179656 131182235 + 0 NA TTS (ENSMUSG00000026427.16) protein_coding-TTS (ENSMUSG00000026427.16) 14566 ENSMUSG00000026427.16 ENSMUSG00000026427 ENSMUST00000153651 Eif2d protein_coding Interval_104831 chr3 75633396 75634169 + 0 NA intron (ENSMUSG00000027834.15, intron 6 of 8) protein_coding-intron (ENSMUSG00000027834.15, intron 6 of 8) 14435 ENSMUSG00000102625.1 ENSMUSG00000102625 ENSMUST00000192682 Gm37672 TEC Interval_127507 chr5 104716541 104717250 + 0 NA Intergenic Intergenic -58884 ENSMUSG00000048334.8 ENSMUSG00000048334 ENSMUST00000055593 Gm8258 processed_pseudogene Interval_23596 chr11 23658894 23659207 + 0 NA intron (ENSMUSG00000020283.5, intron 1 of 2) protein_coding-intron (ENSMUSG00000020283.5, intron 1 of 3) 6623 ENSMUSG00000020283.5 ENSMUSG00000020283 ENSMUST00000146533 Pex13 protein_coding Interval_153553 chr8 3392546 3393295 + 0 NA promoter-TSS (ENSMUSG00000004568.13) protein_coding-promoter-TSS (ENSMUSG00000004568.13) 39483 ENSMUSG00000004568.13 ENSMUSG00000004568 ENSMUST00000145360 Arhgef18 protein_coding Interval_86639 chr19 42211385 42212253 + 0 NA Intergenic Intergenic -9567 ENSMUSG00000018822.7 ENSMUSG00000018822 ENSMUST00000018966 Sfrp5 protein_coding Interval_98289 chr2 150828268 150829002 + 0 NA TTS (ENSMUSG00000033059.7) protein_coding-TTS (ENSMUSG00000033059.7) 13313 ENSMUSG00000033059.7 ENSMUSG00000033059 ENSMUST00000135717 Pygb protein_coding Interval_78132 chr18 9008826 9009375 + 0 NA Intergenic Intergenic 41356 ENSMUSG00000117549.1 ENSMUSG00000117549 ENSMUST00000234292 Gm7523 processed_pseudogene Interval_52215 chr14 40709343 40709608 + 0 NA Intergenic Intergenic -37752 ENSMUSG00000114933.1 ENSMUSG00000114933 ENSMUST00000225171 Gm48040 processed_pseudogene Interval_154705 chr8 22725114 22725534 + 0 NA Intergenic Intergenic -18784 ENSMUSG00000031537.15 ENSMUSG00000031537 ENSMUST00000150214 Ikbkb protein_coding Interval_3991 chr1 65727664 65728407 + 0 NA Intergenic Intergenic 175353 ENSMUSG00000082774.1 ENSMUSG00000082774 ENSMUST00000117848 Gm8805 processed_pseudogene Interval_92929 chr2 68749825 68750056 + 0 NA Intergenic Intergenic 33649 ENSMUSG00000079324.11 ENSMUSG00000079324 ENSMUST00000135023 4932414N04Rik protein_coding Interval_169041 chr9 90833690 90834509 + 0 NA Intergenic Intergenic -5239 ENSMUSG00000099512.1 ENSMUSG00000099512 ENSMUST00000185312 Gm28703 lincRNA Interval_125762 chr5 73947695 73948782 + 0 NA exon (ENSMUSG00000106968.1, exon 2 of 2) lincRNA-exon (ENSMUSG00000106968.1, exon 2 of 2) 1857 ENSMUSG00000106968.1 ENSMUSG00000106968 ENSMUST00000202711 C78283 lincRNA Interval_141535 chr6 128971305 128971537 + 0 NA intron (ENSMUSG00000000248.16, intron 1 of 5) protein_coding-intron (ENSMUSG00000000248.16, intron 2 of 6) 160 ENSMUSG00000000248.16 ENSMUSG00000000248 ENSMUST00000075789 Clec2g protein_coding Interval_109227 chr3 138077402 138077857 + 0 NA TTS (ENSMUSG00000090066.2) protein_coding-TTS (ENSMUSG00000090066.2) 6032 ENSMUSG00000090066.2 ENSMUSG00000090066 ENSMUST00000184925 1110002E22Rik protein_coding Interval_111720 chr4 26702147 26702353 + 0 NA intron (ENSMUSG00000086257.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000086257.1, intron 1 of 2) 3199 ENSMUSG00000086257.1 ENSMUSG00000086257 ENSMUST00000154459 4930548K13Rik lincRNA Interval_72971 chr17 33890225 33891022 + 0 NA promoter-TSS (ENSMUSG00000079553.11) protein_coding-promoter-TSS (ENSMUSG00000079553.11) 8 ENSMUSG00000079553.11 ENSMUSG00000079553 ENSMUST00000172608 Kifc1 protein_coding Interval_65580 chr16 23548209 23549126 + 0 NA intron (ENSMUSG00000109783.1, intron 4 of 4) processed_transcript-intron (ENSMUSG00000109783.1, intron 3 of 3) -28019 ENSMUSG00000022887.9 ENSMUSG00000022887 ENSMUST00000229152 Masp1 protein_coding Interval_13926 chr10 24718193 24718569 + 0 NA Intergenic Intergenic -6384 ENSMUSG00000037370.13 ENSMUSG00000037370 ENSMUST00000142974 Enpp1 protein_coding Interval_152270 chr7 131245124 131245442 + 0 NA intron (ENSMUSG00000006204.7, intron 24 of 70) protein_coding-intron (ENSMUSG00000006204.7, intron 20 of 22) 40351 ENSMUSG00000118585.1 ENSMUSG00000118585 ENSMUST00000239260 AC110885.1 unprocessed_pseudogene Interval_34212 chr11 121315892 121316470 + 0 NA Intergenic Intergenic 25007 ENSMUSG00000025173.13 ENSMUSG00000025173 ENSMUST00000127373 Wdr45b protein_coding Interval_134237 chr6 23410129 23411389 + 0 NA exon (ENSMUSG00000017978.18, exon 13 of 30) protein_coding-exon (ENSMUSG00000017978.18, exon 13 of 30) -108987 ENSMUSG00000098877.1 ENSMUSG00000098877 ENSMUST00000185172 Gm27959 rRNA Interval_25761 chr11 51572799 51573023 + 0 NA intron (ENSMUSG00000063564.13, intron 22 of 28) protein_coding-intron (ENSMUSG00000063564.13, intron 22 of 28) -1521 ENSMUSG00000063564.13 ENSMUSG00000063564 ENSMUST00000151098 Col23a1 protein_coding Interval_38386 chr12 78449365 78449717 + 0 NA intron (ENSMUSG00000047454.12, intron 4 of 22) protein_coding-intron (ENSMUSG00000047454.12, intron 4 of 23) 7946 ENSMUSG00000112391.1 ENSMUSG00000112391 ENSMUST00000218041 Gm48230 TEC Interval_53958 chr14 63794596 63795676 + 0 NA exon (ENSMUSG00000035067.9, exon 1 of 3) protein_coding-exon (ENSMUSG00000035067.9, exon 1 of 3) 67947 ENSMUSG00000076049.4 ENSMUSG00000076049 ENSMUST00000102094 Mir598 miRNA Interval_18607 chr10 88405414 88405623 + 0 NA intron (ENSMUSG00000035311.16, intron 3 of 5) protein_coding-intron (ENSMUSG00000035311.16, intron 2 of 20) -30526 ENSMUSG00000035311.16 ENSMUSG00000035311 ENSMUST00000155306 Gnptab protein_coding Interval_14887 chr10 40841670 40841970 + 0 NA intron (ENSMUSG00000038446.8, intron 2 of 3) protein_coding-intron (ENSMUSG00000038446.8, intron 10 of 14) 4117 ENSMUSG00000038446.8 ENSMUSG00000038446 ENSMUST00000215441 Cdc40 protein_coding Interval_42279 chr13 11586625 11587293 + 0 NA TTS (ENSMUSG00000021313.16) protein_coding-TTS (ENSMUSG00000021313.16) -2005 ENSMUSG00000021313.16 ENSMUSG00000021313 ENSMUST00000221341 Ryr2 protein_coding Interval_144774 chr7 28160842 28161647 + 0 NA intron (ENSMUSG00000078776.9, intron 16 of 18) protein_coding-intron (ENSMUSG00000078776.9, intron 17 of 19) 8383 ENSMUSG00000109015.1 ENSMUSG00000109015 ENSMUST00000207600 Gm31024 TEC Interval_49138 chr13 108382809 108383321 + 0 NA intron (ENSMUSG00000021697.12, intron 8 of 9) protein_coding-intron (ENSMUSG00000021697.12, intron 8 of 10) 25639 ENSMUSG00000021697.12 ENSMUSG00000021697 ENSMUST00000172402 Depdc1b protein_coding Interval_22673 chr11 12811107 12812543 + 0 NA Intergenic Intergenic 119012 ENSMUSG00000088509.1 ENSMUSG00000088509 ENSMUST00000157884 Gm22789 snoRNA Interval_145374 chr7 34291509 34292013 + 0 NA intron (ENSMUSG00000066571.13, intron 1 of 1) protein_coding-intron (ENSMUSG00000066571.13, intron 1 of 13) 21761 ENSMUSG00000066571.13 ENSMUSG00000066571 ENSMUST00000205618 4931406P16Rik protein_coding Interval_117289 chr4 122713388 122714209 + 0 NA Intergenic Intergenic 20935 ENSMUSG00000084082.1 ENSMUSG00000084082 ENSMUST00000121835 Gm12872 unprocessed_pseudogene Interval_156247 chr8 46537210 46537920 + 0 NA Intergenic Intergenic -14473 ENSMUSG00000031629.14 ENSMUSG00000031629 ENSMUST00000136724 Cenpu protein_coding Interval_4372 chr1 73323604 73324826 + 0 NA Intergenic Intergenic -12165 ENSMUSG00000100697.1 ENSMUSG00000100697 ENSMUST00000190038 Gm29184 processed_pseudogene Interval_63186 chr15 99619329 99619931 + 0 NA TTS (ENSMUSG00000023015.14) protein_coding-TTS (ENSMUSG00000023015.14) 18230 ENSMUSG00000043144.6 ENSMUSG00000043144 ENSMUST00000023754 Aqp6 protein_coding Interval_41274 chr12 112329168 112330434 + 0 NA Intergenic Intergenic 20266 ENSMUSG00000103080.1 ENSMUSG00000103080 ENSMUST00000194990 Gm38123 TEC Interval_113166 chr4 48801150 48801934 + 0 NA Intergenic Intergenic -38580 ENSMUSG00000093240.1 ENSMUSG00000093240 ENSMUST00000175499 Gm24573 rRNA Interval_55908 chr14 101963567 101964031 + 0 NA Intergenic Intergenic 18964 ENSMUSG00000115584.1 ENSMUSG00000115584 ENSMUST00000226515 Gm5854 processed_pseudogene Interval_73461 chr17 37483299 37483560 + 0 NA intron (ENSMUSG00000016283.13, intron 1 of 4) protein_coding-intron (ENSMUSG00000016283.13, intron 1 of 3) 123 ENSMUSG00000016283.13 ENSMUSG00000016283 ENSMUST00000171139 H2-M2 protein_coding Interval_47029 chr13 74475595 74475781 + 0 NA exon (ENSMUSG00000116765.1, exon 2 of 2) lincRNA-exon (ENSMUSG00000116765.1, exon 2 of 2) 1045 ENSMUSG00000116765.1 ENSMUSG00000116765 ENSMUST00000231729 Gm49762 lincRNA Interval_34645 chr12 8319813 8320878 + 0 NA intron (ENSMUSG00000020605.9, intron 2 of 2) protein_coding-intron (ENSMUSG00000020605.9, intron 2 of 6) 2734 ENSMUSG00000020605.9 ENSMUSG00000020605 ENSMUST00000220300 Hs1bp3 protein_coding Interval_5643 chr1 90497618 90498899 + 0 NA Intergenic Intergenic -22238 ENSMUSG00000103292.1 ENSMUSG00000103292 ENSMUST00000192105 Gm35048 TEC Interval_172134 chrX 7877537 7878929 + 0 NA promoter-TSS (ENSMUSG00000031155.17) protein_coding-promoter-TSS (ENSMUSG00000031155.17) -385 ENSMUSG00000031155.17 ENSMUSG00000031155 ENSMUST00000145177 Pim2 protein_coding Interval_123312 chr5 31315250 31316712 + 0 NA intron (ENSMUSG00000059434.9, intron 14 of 16) protein_coding-intron (ENSMUSG00000059434.9, intron 16 of 18) 18427 ENSMUSG00000059434.9 ENSMUSG00000059434 ENSMUST00000202242 Gckr protein_coding Interval_49806 chr13 116071455 116072795 + 0 NA Intergenic Intergenic -23910 ENSMUSG00000114956.1 ENSMUSG00000114956 ENSMUST00000224590 Gm47893 processed_pseudogene Interval_41635 chr12 117250386 117251079 + 0 NA promoter-TSS (ENSMUSG00000065538.1) miRNA-promoter-TSS (ENSMUSG00000065538.1) -85 ENSMUSG00000065538.1 ENSMUSG00000065538 ENSMUST00000083604 Mir153 miRNA Interval_44860 chr13 49159811 49160167 + 0 NA Intergenic Intergenic -11977 ENSMUSG00000037989.15 ENSMUSG00000037989 ENSMUST00000159633 Wnk2 protein_coding Interval_23568 chr11 23429819 23430322 + 0 NA intron (ENSMUSG00000056342.16, intron 44 of 79) protein_coding-intron (ENSMUSG00000056342.16, intron 6 of 23) 49597 ENSMUSG00000065591.1 ENSMUSG00000065591 ENSMUST00000083657 Gm22753 snRNA Interval_158896 chr8 87796163 87796433 + 0 NA intron (ENSMUSG00000045333.15, intron 3 of 3) protein_coding-intron (ENSMUSG00000045333.15, intron 2 of 6) 157564 ENSMUSG00000045333.15 ENSMUSG00000045333 ENSMUST00000173092 Zfp423 protein_coding Interval_16333 chr10 62289964 62290706 + 0 NA promoter-TSS (ENSMUSG00000037012.18) protein_coding-promoter-TSS (ENSMUSG00000037012.18) -6 ENSMUSG00000037012.18 ENSMUSG00000037012 ENSMUST00000149534 Hk1 protein_coding Interval_129874 chr5 122858563 122859010 + 0 NA intron (ENSMUSG00000029474.7, intron 1 of 1) protein_coding-intron (ENSMUSG00000029474.7, intron 1 of 5) 8629 ENSMUSG00000029474.7 ENSMUSG00000029474 ENSMUST00000198602 Rnf34 protein_coding Interval_14789 chr10 39908271 39909660 + 0 NA Intergenic Intergenic -2184 ENSMUSG00000111355.1 ENSMUSG00000111355 ENSMUST00000213986 Gm8911 processed_pseudogene Interval_128246 chr5 112012701 112013177 + 0 NA Intergenic Intergenic -68704 ENSMUSG00000106060.1 ENSMUSG00000106060 ENSMUST00000197648 Gm42488 lincRNA Interval_36293 chr12 40831831 40832506 + 0 NA intron (ENSMUSG00000035954.10, intron 44 of 51) protein_coding-intron (ENSMUSG00000035954.10, intron 44 of 52) -43369 ENSMUSG00000113435.1 ENSMUSG00000113435 ENSMUST00000221545 Gm19441 processed_pseudogene Interval_52633 chr14 48147670 48147926 + 0 NA intron (ENSMUSG00000021846.9, intron 1 of 2) protein_coding-intron (ENSMUSG00000021846.9, intron 1 of 5) 13574 ENSMUSG00000115686.1 ENSMUSG00000115686 ENSMUST00000228432 Gm49310 TEC Interval_87296 chr19 47435591 47437868 + 0 NA intron (ENSMUSG00000053617.12, intron 1 of 13) protein_coding-intron (ENSMUSG00000053617.12, intron 1 of 14) -26370 ENSMUSG00000053617.12 ENSMUSG00000053617 ENSMUST00000237828 Sh3pxd2a protein_coding Interval_111810 chr4 30777403 30778573 + 0 NA intron (ENSMUSG00000085522.1, intron 5 of 6) lincRNA-intron (ENSMUSG00000085522.1, intron 5 of 6) -75453 ENSMUSG00000082949.1 ENSMUSG00000082949 ENSMUST00000118491 Gm11920 processed_pseudogene Interval_88177 chr19 60345067 60346842 + 0 NA Intergenic Intergenic 104101 ENSMUSG00000099678.1 ENSMUSG00000099678 ENSMUST00000186261 Gm28351 lincRNA Interval_67141 chr16 43865927 43866867 + 0 NA intron (ENSMUSG00000022704.16, intron 7 of 7) protein_coding-intron (ENSMUSG00000022704.16, intron 7 of 7) 14816 ENSMUSG00000022704.16 ENSMUSG00000022704 ENSMUST00000124674 Qtrt2 protein_coding Interval_106144 chr3 93646544 93646771 + 0 NA Intergenic Intergenic 6029 ENSMUSG00000103362.1 ENSMUSG00000103362 ENSMUST00000191960 Tdpoz2 protein_coding Interval_157276 chr8 68880196 68881951 + 0 NA exon (ENSMUSG00000015568.16, exon 1 of 1) protein_coding-exon (ENSMUSG00000015568.16, exon 1 of 1) 518 ENSMUSG00000015568.16 ENSMUSG00000015568 ENSMUST00000169749 Lpl protein_coding Interval_155583 chr8 34824801 34826142 + 0 NA TTS (ENSMUSG00000031529.5) protein_coding-TTS (ENSMUSG00000031529.5) 18174 ENSMUSG00000031530.6 ENSMUSG00000031530 ENSMUST00000033930 Dusp4 protein_coding Interval_119225 chr4 136309614 136311725 + 0 NA promoter-TSS (ENSMUSG00000066037.14) protein_coding-promoter-TSS (ENSMUSG00000066037.14) -2783 ENSMUSG00000081330.1 ENSMUSG00000081330 ENSMUST00000119087 Gm13013 processed_pseudogene Interval_64134 chr16 8655511 8657028 + 0 NA intron (ENSMUSG00000022711.16, intron 8 of 8) protein_coding-intron (ENSMUSG00000022711.16, intron 8 of 8) 15886 ENSMUSG00000008393.9 ENSMUSG00000008393 ENSMUST00000008537 Carhsp1 protein_coding Interval_6516 chr1 113963167 113964931 + 0 NA promoter-TSS (ENSMUSG00000097648.1) lincRNA-promoter-TSS (ENSMUSG00000097648.1) 85 ENSMUSG00000097648.1 ENSMUSG00000097648 ENSMUST00000180837 9330185C12Rik lincRNA Interval_72225 chr17 28684599 28685016 + 0 NA exon (ENSMUSG00000036196.16, exon 2 of 20) protein_coding-exon (ENSMUSG00000036196.16, exon 2 of 20) 4982 ENSMUSG00000036196.16 ENSMUSG00000036196 ENSMUST00000233213 Slc26a8 protein_coding Interval_114994 chr4 88241423 88241662 + 0 NA intron (ENSMUSG00000038368.16, intron 13 of 41) protein_coding-intron (ENSMUSG00000038368.16, intron 15 of 43) 89846 ENSMUSG00000082597.1 ENSMUSG00000082597 ENSMUST00000117297 Gm12645 processed_pseudogene Interval_45665 chr13 56664500 56665266 + 0 NA Intergenic Intergenic 33670 ENSMUSG00000035493.10 ENSMUSG00000035493 ENSMUST00000226024 Tgfbi protein_coding Interval_11716 chr1 184845115 184846361 + 0 NA promoter-TSS (ENSMUSG00000073481.9) protein_coding-promoter-TSS (ENSMUSG00000073481.9) 12674 ENSMUSG00000088562.2 ENSMUSG00000088562 ENSMUST00000157937 Gm23780 misc_RNA Interval_36600 chr12 51211724 51212005 + 0 NA Intergenic Intergenic -77162 ENSMUSG00000112926.1 ENSMUSG00000112926 ENSMUST00000218047 Gm7172 processed_pseudogene Interval_138330 chr6 87289679 87290694 + 0 NA intron (ENSMUSG00000033420.12, intron 3 of 16) protein_coding-intron (ENSMUSG00000033420.12, intron 3 of 17) 9037 ENSMUSG00000084613.1 ENSMUSG00000084613 ENSMUST00000122664 n-R5s164 rRNA Interval_11502 chr1 182289716 182289993 + 0 NA intron (ENSMUSG00000100147.2, intron 1 of 2) lincRNA-intron (ENSMUSG00000100147.2, intron 1 of 2) 1864 ENSMUSG00000100147.2 ENSMUSG00000100147 ENSMUST00000185216 1700047M11Rik lincRNA Interval_74745 chr17 56280841 56281647 + 0 NA intron (ENSMUSG00000024197.10, intron 6 of 7) protein_coding-intron (ENSMUSG00000024197.10, intron 6 of 7) -4458 ENSMUSG00000047123.8 ENSMUSG00000047123 ENSMUST00000058136 Ticam1 protein_coding Interval_143231 chr7 4641941 4642222 + 0 NA TTS (ENSMUSG00000052296.7) protein_coding-TTS (ENSMUSG00000052296.7) 1203 ENSMUSG00000052296.7 ENSMUSG00000052296 ENSMUST00000205374 Ppp6r1 protein_coding Interval_111021 chr4 11270415 11271212 + 0 NA intron (ENSMUSG00000045205.16, intron 11 of 12) protein_coding-intron (ENSMUSG00000045205.16, intron 17 of 18) 8606 ENSMUSG00000089185.1 ENSMUSG00000089185 ENSMUST00000158560 Gm22940 snRNA Interval_36852 chr12 54676703 54678131 + 0 NA intron (ENSMUSG00000054302.15, intron 4 of 4) protein_coding-intron (ENSMUSG00000054302.15, intron 2 of 2) 2392 ENSMUSG00000113392.1 ENSMUSG00000113392 ENSMUST00000223274 Gm36262 processed_pseudogene Interval_160859 chr8 113984772 113985507 + 0 NA Intergenic Intergenic -139835 ENSMUSG00000053399.9 ENSMUSG00000053399 ENSMUST00000212527 Adamts18 protein_coding Interval_156149 chr8 45157873 45158395 + 0 NA intron (ENSMUSG00000110260.1, intron 4 of 4) lincRNA-intron (ENSMUSG00000110260.1, intron 4 of 4) 7085 ENSMUSG00000110231.1 ENSMUSG00000110231 ENSMUST00000209210 Gm6329 lincRNA Interval_128003 chr5 110219924 110220739 + 0 NA intron (ENSMUSG00000029502.14, intron 21 of 23) protein_coding-intron (ENSMUSG00000029502.14, intron 21 of 23) -10673 ENSMUSG00000029501.14 ENSMUSG00000029501 ENSMUST00000196821 Ankle2 protein_coding Interval_146260 chr7 45023751 45026976 + 0 NA Intergenic Intergenic 5893 ENSMUSG00000038387.9 ENSMUSG00000038387 ENSMUST00000210895 Rras protein_coding Interval_39119 chr12 85204282 85204591 + 0 NA Intergenic Intergenic -15110 ENSMUSG00000004788.11 ENSMUSG00000004788 ENSMUST00000130760 Eif2b2 protein_coding Interval_13598 chr10 20119956 20120141 + 0 NA intron (ENSMUSG00000071369.11, intron 22 of 28) protein_coding-intron (ENSMUSG00000071369.11, intron 23 of 29) -4753 ENSMUSG00000071369.11 ENSMUSG00000071369 ENSMUST00000156369 Map3k5 protein_coding Interval_65775 chr16 28752699 28753846 + 0 NA promoter-TSS (ENSMUSG00000022523.10) protein_coding-promoter-TSS (ENSMUSG00000022523.10) 83095 ENSMUSG00000051065.9 ENSMUSG00000051065 ENSMUST00000232571 Mb21d2 protein_coding Interval_115980 chr4 106770628 106771549 + 0 NA intron (ENSMUSG00000034853.16, intron 2 of 3) protein_coding-intron (ENSMUSG00000034853.16, intron 2 of 15) -3728 ENSMUSG00000081110.1 ENSMUSG00000081110 ENSMUST00000121767 Gm12745 processed_pseudogene Interval_115674 chr4 101934578 101935524 + 0 NA Intergenic Intergenic -5356 ENSMUSG00000070890.3 ENSMUSG00000070890 ENSMUST00000052027 Gm12794 protein_coding Interval_67471 chr16 49206266 49206876 + 0 NA Intergenic Intergenic 49201 ENSMUSG00000073976.10 ENSMUSG00000073976 ENSMUST00000098226 1700026J12Rik lincRNA Interval_139035 chr6 94400454 94401187 + 0 NA Intergenic Intergenic -17009 ENSMUSG00000107616.1 ENSMUSG00000107616 ENSMUST00000204046 Gm7825 processed_pseudogene Interval_51748 chr14 31928924 31930498 + 0 NA exon (ENSMUSG00000046005.4, exon 2 of 2) lincRNA-exon (ENSMUSG00000046005.4, exon 2 of 2) 23183 ENSMUSG00000046005.4 ENSMUSG00000046005 ENSMUST00000143315 D830044D21Rik lincRNA Interval_173164 chrX 73715638 73717154 + 0 NA promoter-TSS (ENSMUSG00000031378.14) protein_coding-promoter-TSS (ENSMUSG00000031378.14) -221 ENSMUSG00000002015.5 ENSMUSG00000002015 ENSMUST00000002091 Bcap31 protein_coding Interval_51076 chr14 22045859 22046290 + 0 NA intron (ENSMUSG00000063458.13, intron 2 of 3) protein_coding-intron (ENSMUSG00000063458.13, intron 2 of 6) -9971 ENSMUSG00000114205.1 ENSMUSG00000114205 ENSMUST00000225573 Gm7480 antisense Interval_99552 chr2 163101321 163102461 + 0 NA Intergenic Intergenic 8992 ENSMUSG00000096635.1 ENSMUSG00000096635 ENSMUST00000175050 Gm22174 miRNA Interval_91651 chr2 45646477 45646668 + 0 NA promoter-TSS (ENSMUSG00000083510.1) processed_pseudogene-promoter-TSS (ENSMUSG00000083510.1) -619 ENSMUSG00000083510.1 ENSMUSG00000083510 ENSMUST00000118312 Gm13478 processed_pseudogene Interval_53374 chr14 56740123 56740761 + 0 NA intron (ENSMUSG00000021938.12, intron 6 of 7) protein_coding-intron (ENSMUSG00000021938.12, intron 6 of 8) 37485 ENSMUSG00000021938.12 ENSMUSG00000021938 ENSMUST00000168575 Pspc1 protein_coding Interval_16289 chr10 61991173 61992224 + 0 NA Intergenic Intergenic -31706 ENSMUSG00000112018.1 ENSMUSG00000112018 ENSMUST00000220135 Gm47919 TEC Interval_157064 chr8 64890340 64890645 + 0 NA Intergenic Intergenic 21485 ENSMUSG00000109613.1 ENSMUSG00000109613 ENSMUST00000211544 Gm45405 processed_pseudogene Interval_168037 chr9 75537788 75538304 + 0 NA intron (ENSMUSG00000058587.9, intron 1 of 1) protein_coding-intron (ENSMUSG00000058587.9, intron 1 of 9) -17544 ENSMUSG00000111228.1 ENSMUSG00000111228 ENSMUST00000215151 Gm48789 processed_pseudogene Interval_101064 chr2 174839816 174840022 + 0 NA intron (ENSMUSG00000084795.1, intron 1 of 2) processed_transcript-intron (ENSMUSG00000084795.1, intron 1 of 3) -1285 ENSMUSG00000084795.1 ENSMUSG00000084795 ENSMUST00000144208 Gm14617 processed_transcript Interval_16429 chr10 62842008 62842399 + 0 NA intron (ENSMUSG00000047146.17, intron 3 of 12) protein_coding-intron (ENSMUSG00000047146.17, intron 2 of 10) 17791 ENSMUSG00000112309.1 ENSMUSG00000112309 ENSMUST00000220243 Gm48353 TEC Interval_155316 chr8 31194970 31195292 + 0 NA exon (ENSMUSG00000046152.16, exon 2 of 5) protein_coding-exon (ENSMUSG00000046152.16, exon 2 of 5) -6138 ENSMUSG00000046152.16 ENSMUSG00000046152 ENSMUST00000162162 Fut10 protein_coding Interval_111548 chr4 22833096 22834028 + 0 NA Intergenic Intergenic 86431 ENSMUSG00000088809.1 ENSMUSG00000088809 ENSMUST00000158184 Gm24078 miRNA Interval_101568 chr3 6696482 6697027 + 0 NA Intergenic Intergenic 55318 ENSMUSG00000103538.3 ENSMUSG00000103538 ENSMUST00000192834 Olfr289-ps1 unprocessed_pseudogene Interval_96135 chr2 119962164 119963204 + 0 NA TTS (ENSMUSG00000033943.15) protein_coding-TTS (ENSMUSG00000033943.15) -10219 ENSMUSG00000033902.12 ENSMUSG00000033902 ENSMUST00000148161 Mapkbp1 protein_coding Interval_112685 chr4 44061124 44063267 + 0 NA intron (ENSMUSG00000028479.18, intron 2 of 2) protein_coding-intron (ENSMUSG00000028479.18, intron 2 of 11) -6898 ENSMUSG00000028479.18 ENSMUSG00000028479 ENSMUST00000140724 Gne protein_coding Interval_68443 chr16 76865794 76866313 + 0 NA intron (ENSMUSG00000100857.2, intron 2 of 7) lincRNA-intron (ENSMUSG00000100857.2, intron 2 of 4) -24269 ENSMUSG00000102036.1 ENSMUSG00000102036 ENSMUST00000190306 1700063K16Rik transcribed_processed_pseudogene Interval_97856 chr2 144465739 144465979 + 0 NA exon (ENSMUSG00000083674.3, exon 2 of 2) transcribed_unitary_pseudogene-exon (ENSMUSG00000083674.3, exon 2 of 2) 1464 ENSMUSG00000083674.3 ENSMUSG00000083674 ENSMUST00000137929 Zfp133-ps transcribed_unitary_pseudogene Interval_93477 chr2 73419379 73419758 + 0 NA exon (ENSMUSG00000087176.1, exon 4 of 5) processed_transcript-exon (ENSMUSG00000087176.1, exon 4 of 5) -2341 ENSMUSG00000085768.1 ENSMUSG00000085768 ENSMUST00000123663 Gm13707 antisense Interval_9573 chr1 159535238 159536145 + 0 NA intron (ENSMUSG00000015829.13, intron 1 of 1) protein_coding-intron (ENSMUSG00000015829.13, intron 1 of 22) 11850 ENSMUSG00000015829.13 ENSMUSG00000015829 ENSMUST00000192457 Tnr protein_coding Interval_16777 chr10 68099937 68100678 + 0 NA intron (ENSMUSG00000019947.10, intron 9 of 9) protein_coding-intron (ENSMUSG00000019947.10, intron 10 of 10) -73681 ENSMUSG00000086838.1 ENSMUSG00000086838 ENSMUST00000143555 Gm16212 antisense Interval_162036 chr8 124616757 124617914 + 0 NA intron (ENSMUSG00000031981.7, intron 18 of 19) protein_coding-intron (ENSMUSG00000031981.7, intron 18 of 19) 3895 ENSMUSG00000031981.7 ENSMUSG00000031981 ENSMUST00000133583 Capn9 protein_coding Interval_165627 chr9 50495567 50496645 + 0 NA intron (ENSMUSG00000032068.14, intron 1 of 3) protein_coding-intron (ENSMUSG00000032068.14, intron 1 of 3) 1579 ENSMUSG00000032068.14 ENSMUSG00000032068 ENSMUST00000188047 Plet1 protein_coding Interval_121498 chr4 156197040 156198256 + 0 NA promoter-TSS (ENSMUSG00000041936.18) protein_coding-promoter-TSS (ENSMUSG00000041936.18) 3148 ENSMUSG00000035692.7 ENSMUSG00000035692 ENSMUST00000085425 Isg15 protein_coding Interval_44738 chr13 48112464 48113367 + 0 NA intron (ENSMUSG00000114457.1, intron 2 of 3) antisense-intron (ENSMUSG00000097622.2, intron 1 of 2) 81142 ENSMUSG00000114810.1 ENSMUSG00000114810 ENSMUST00000223995 Gm36101 lincRNA Interval_148046 chr7 78807172 78807533 + 0 NA Intergenic Intergenic -10933 ENSMUSG00000108603.1 ENSMUSG00000108603 ENSMUST00000205759 5330411O13Rik lincRNA Interval_2199 chr1 36982595 36984621 + 0 NA Intergenic Intergenic -21831 ENSMUSG00000095944.1 ENSMUSG00000095944 ENSMUST00000177688 n-R5s210 rRNA Interval_41448 chr12 114124564 114124802 + 0 NA Intergenic Intergenic 3301 ENSMUSG00000102515.1 ENSMUSG00000102515 ENSMUST00000191949 Ighv12-2 IG_V_pseudogene Interval_83981 chr19 5923754 5925273 + 0 NA intron (ENSMUSG00000045664.5, intron 1 of 1) protein_coding-intron (ENSMUSG00000045664.5, intron 1 of 1) 303 ENSMUSG00000045664.5 ENSMUSG00000045664 ENSMUST00000055458 Cdc42ep2 protein_coding Interval_115149 chr4 91576372 91576568 + 0 NA Intergenic Intergenic -50119 ENSMUSG00000085817.1 ENSMUSG00000085817 ENSMUST00000134966 Gm12668 lincRNA Interval_21537 chr10 129361820 129362675 + 0 NA Intergenic Intergenic 13397 ENSMUSG00000095075.2 ENSMUSG00000095075 ENSMUST00000077024 Olfr782 protein_coding Interval_149948 chr7 103397547 103397854 + 0 NA Intergenic Intergenic -11523 ENSMUSG00000059874.2 ENSMUSG00000059874 ENSMUST00000218246 Olfr603 protein_coding Interval_120876 chr4 151216849 151217266 + 0 NA intron (ENSMUSG00000014592.21, intron 6 of 24) protein_coding-intron (ENSMUSG00000014592.21, intron 6 of 23) 127487 ENSMUSG00000078491.2 ENSMUSG00000078491 ENSMUST00000105667 Gm13090 protein_coding Interval_164830 chr9 42316994 42317646 + 0 NA TTS (ENSMUSG00000096114.1) snoRNA-TTS (ENSMUSG00000096114.1) 361 ENSMUSG00000096114.1 ENSMUSG00000096114 ENSMUST00000179241 Gm26272 snoRNA Interval_143612 chr7 13166595 13167072 + 0 NA intron (ENSMUSG00000117853.1, intron 1 of 1) protein_coding-intron (ENSMUSG00000117853.1, intron 1 of 2) 7265 ENSMUSG00000117853.1 ENSMUSG00000117853 ENSMUST00000171783 Vmn1r88 protein_coding Interval_165944 chr9 54842051 54843083 + 0 NA Intergenic Intergenic -17285 ENSMUSG00000111686.1 ENSMUSG00000111686 ENSMUST00000213253 Rab7-ps1 processed_pseudogene Interval_15709 chr10 53964491 53964689 + 0 NA intron (ENSMUSG00000003746.16, intron 5 of 11) protein_coding-intron (ENSMUSG00000003746.16, intron 6 of 12) -99221 ENSMUSG00000112824.1 ENSMUSG00000112824 ENSMUST00000219148 Gm47917 antisense Interval_14674 chr10 38810812 38811297 + 0 NA Intergenic Intergenic 10725 ENSMUSG00000094311.1 ENSMUSG00000094311 ENSMUST00000179279 Rfpl4b protein_coding Interval_91529 chr2 41207716 41208080 + 0 NA intron (ENSMUSG00000049252.17, intron 29 of 62) protein_coding-intron (ENSMUSG00000049252.17, intron 32 of 90) 209041 ENSMUSG00000083260.1 ENSMUSG00000083260 ENSMUST00000121274 Gm13460 processed_pseudogene Interval_132028 chr5 142385366 142385576 + 0 NA Intergenic Intergenic -16026 ENSMUSG00000056493.9 ENSMUSG00000056493 ENSMUST00000072837 Foxk1 protein_coding Interval_17415 chr10 76461918 76463419 + 0 NA exon (ENSMUSG00000033126.5, exon 5 of 5) protein_coding-exon (ENSMUSG00000033126.5, exon 5 of 5) 6195 ENSMUSG00000033126.5 ENSMUSG00000033126 ENSMUST00000218564 Ybey protein_coding Interval_8411 chr1 138974799 138975581 + 0 NA intron (ENSMUSG00000056268.15, intron 1 of 20) protein_coding-intron (ENSMUSG00000056268.15, intron 1 of 20) -2466 ENSMUSG00000104900.1 ENSMUSG00000104900 ENSMUST00000200494 4930596I21Rik sense_intronic Interval_92482 chr2 60049134 60051255 + 0 NA intron (ENSMUSG00000026987.16, intron 1 of 34) protein_coding-intron (ENSMUSG00000026987.16, intron 1 of 34) 13053 ENSMUSG00000085975.1 ENSMUSG00000085975 ENSMUST00000153675 Gm13572 lincRNA Interval_5289 chr1 87263855 87265701 + 0 NA intron (ENSMUSG00000026255.15, intron 1 of 4) protein_coding-intron (ENSMUSG00000026255.15, intron 1 of 3) 396 ENSMUSG00000089821.1 ENSMUSG00000089821 ENSMUST00000138844 Efhd1os antisense Interval_166576 chr9 61031731 61032811 + 0 NA promoter-TSS (ENSMUSG00000111147.1) lincRNA-promoter-TSS (ENSMUSG00000111147.1) 59 ENSMUSG00000111147.1 ENSMUSG00000111147 ENSMUST00000216170 Gm33699 lincRNA Interval_133917 chr6 15517898 15518104 + 0 NA Intergenic Intergenic 113020 ENSMUSG00000093317.1 ENSMUSG00000093317 ENSMUST00000175576 Gm25470 miRNA Interval_134574 chr6 29679997 29680801 + 0 NA Intergenic Intergenic -27629 ENSMUSG00000001763.14 ENSMUSG00000001763 ENSMUST00000137925 Tspan33 protein_coding Interval_47032 chr13 74502778 74503566 + 0 NA Intergenic Intergenic 9029 ENSMUSG00000116646.1 ENSMUSG00000116646 ENSMUST00000231421 Gm49763 antisense Interval_130887 chr5 133559559 133560597 + 0 NA intron (ENSMUSG00000105227.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000105227.1, intron 1 of 1) 38328 ENSMUSG00000105227.1 ENSMUSG00000105227 ENSMUST00000196125 Gm36667 lincRNA Interval_33413 chr11 116429467 116429857 + 0 NA Intergenic Intergenic -4847 ENSMUSG00000050628.6 ENSMUSG00000050628 ENSMUST00000144310 Ubald2 protein_coding Interval_58504 chr15 35286911 35287623 + 0 NA Intergenic Intergenic -8844 ENSMUSG00000022330.5 ENSMUSG00000022330 ENSMUST00000228152 Osr2 protein_coding Interval_93487 chr2 73484424 73485799 + 0 NA intron (ENSMUSG00000075284.10, intron 1 of 7) protein_coding-intron (ENSMUSG00000075284.10, intron 1 of 7) 25406 ENSMUSG00000086069.1 ENSMUSG00000086069 ENSMUST00000145170 Gm13708 lincRNA Interval_129577 chr5 121078499 121079295 + 0 NA Intergenic Intergenic 64738 ENSMUSG00000043733.14 ENSMUSG00000043733 ENSMUST00000148871 Ptpn11 protein_coding Interval_36130 chr12 36182518 36184318 + 0 NA intron (ENSMUSG00000036188.4, intron 3 of 7) protein_coding-intron (ENSMUSG00000036188.4, intron 5 of 9) 11050 ENSMUSG00000113511.1 ENSMUSG00000113511 ENSMUST00000221263 Gm19046 processed_pseudogene Interval_33921 chr11 119408040 119408370 + 0 NA intron (ENSMUSG00000070327.14, intron 2 of 66) protein_coding-intron (ENSMUSG00000070327.14, intron 2 of 66) 17733 ENSMUSG00000088015.1 ENSMUSG00000088015 ENSMUST00000157390 Mir1932 miRNA Interval_166153 chr9 57116545 57118158 + 0 NA intron (ENSMUSG00000086728.2, intron 1 of 3) protein_coding-intron (ENSMUSG00000042557.14, intron 15 of 19) -13417 ENSMUSG00000032295.15 ENSMUSG00000032295 ENSMUST00000161875 Man2c1 protein_coding Interval_108579 chr3 129256287 129257335 + 0 NA Intergenic Intergenic -28458 ENSMUSG00000106417.1 ENSMUSG00000106417 ENSMUST00000198498 Gm42628 processed_pseudogene Interval_72658 chr17 31354833 31355172 + 0 NA Intergenic Intergenic 21385 ENSMUSG00000024036.16 ENSMUSG00000024036 ENSMUST00000235220 Slc37a1 protein_coding Interval_28892 chr11 79102414 79103307 + 0 NA intron (ENSMUSG00000018334.18, intron 1 of 12) protein_coding-intron (ENSMUSG00000018334.18, intron 1 of 18) -43024 ENSMUSG00000018334.18 ENSMUSG00000018334 ENSMUST00000129463 Ksr1 protein_coding Interval_169892 chr9 102779217 102780197 + 0 NA intron (ENSMUSG00000110884.1, intron 1 of 4) lincRNA-intron (ENSMUSG00000110884.1, intron 1 of 4) 8212 ENSMUSG00000110884.1 ENSMUSG00000110884 ENSMUST00000217446 Gm47416 lincRNA Interval_148672 chr7 84000883 84002899 + 0 NA intron (ENSMUSG00000052353.13, intron 2 of 23) protein_coding-intron (ENSMUSG00000052353.13, intron 2 of 28) 84611 ENSMUSG00000052353.13 ENSMUSG00000052353 ENSMUST00000147578 Cemip protein_coding Interval_92491 chr2 60084688 60085162 + 0 NA intron (ENSMUSG00000026987.16, intron 1 of 5) protein_coding-intron (ENSMUSG00000026987.16, intron 1 of 34) 13789 ENSMUSG00000087181.3 ENSMUSG00000087181 ENSMUST00000140763 Gm13570 processed_pseudogene Interval_36646 chr12 51734094 51736663 + 0 NA intron (ENSMUSG00000020955.9, intron 5 of 5) protein_coding-intron (ENSMUSG00000020955.9, intron 5 of 5) 4964 ENSMUSG00000089346.1 ENSMUSG00000089346 ENSMUST00000158721 Gm22663 snRNA Interval_99064 chr2 156967551 156969379 + 0 NA intron (ENSMUSG00000027634.14, intron 1 of 3) protein_coding-intron (ENSMUSG00000027634.14, intron 2 of 16) -4172 ENSMUSG00000098750.1 ENSMUSG00000098750 ENSMUST00000185037 Gm27653 scaRNA Interval_20369 chr10 117150010 117150700 + 0 NA Intergenic Intergenic -1860 ENSMUSG00000020170.4 ENSMUSG00000020170 ENSMUST00000219104 Frs2 protein_coding Interval_13338 chr10 15662897 15663262 + 0 NA intron (ENSMUSG00000112089.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000112089.1, intron 1 of 1) -7845 ENSMUSG00000112335.1 ENSMUSG00000112335 ENSMUST00000219927 Gm46188 processed_pseudogene Interval_50486 chr14 13988625 13989127 + 0 NA intron (ENSMUSG00000021738.5, intron 1 of 12) protein_coding-intron (ENSMUSG00000021738.5, intron 1 of 12) -24268 ENSMUSG00000021738.5 ENSMUSG00000021738 ENSMUST00000224315 Atxn7 protein_coding Interval_83092 chr18 81205562 81206248 + 0 NA Intergenic Intergenic 30161 ENSMUSG00000097181.1 ENSMUSG00000097181 ENSMUST00000181204 4930594M17Rik lincRNA Interval_123860 chr5 36033552 36034329 + 0 NA intron (ENSMUSG00000029093.14, intron 18 of 26) protein_coding-intron (ENSMUSG00000029093.14, intron 18 of 26) 49752 ENSMUSG00000029094.12 ENSMUSG00000029094 ENSMUST00000201482 Afap1 protein_coding Interval_104819 chr3 75287705 75287912 + 0 NA intron (ENSMUSG00000104301.3, intron 14 of 14) protein_coding-intron (ENSMUSG00000104301.3, intron 14 of 14) -17730 ENSMUSG00000034139.4 ENSMUSG00000034139 ENSMUST00000039047 Serpini2 protein_coding Interval_8955 chr1 152695491 152695782 + 0 NA intron (ENSMUSG00000026482.13, intron 1 of 18) protein_coding-intron (ENSMUSG00000026482.13, intron 1 of 17) -8135 ENSMUSG00000086145.1 ENSMUSG00000086145 ENSMUST00000139309 Gm15479 sense_intronic Interval_169200 chr9 95462850 95463178 + 0 NA intron (ENSMUSG00000032407.14, intron 26 of 27) protein_coding-intron (ENSMUSG00000032407.14, intron 25 of 26) 37384 ENSMUSG00000101459.1 ENSMUSG00000101459 ENSMUST00000190263 Gm19193 processed_pseudogene Interval_172891 chrX 52902650 52904283 + 0 NA Intergenic Intergenic 4878 ENSMUSG00000081684.4 ENSMUSG00000081684 ENSMUST00000117295 Rps2-ps13 processed_pseudogene Interval_109031 chr3 135280822 135281486 + 0 NA promoter-TSS (ENSMUSG00000028167.15) protein_coding-promoter-TSS (ENSMUSG00000028167.15) -129 ENSMUSG00000028167.15 ENSMUSG00000028167 ENSMUST00000154869 Bdh2 protein_coding Interval_34066 chr11 120283475 120283867 + 0 NA intron (ENSMUSG00000039741.15, intron 16 of 27) protein_coding-intron (ENSMUSG00000039741.15, intron 16 of 27) -6122 ENSMUSG00000039741.15 ENSMUSG00000039741 ENSMUST00000143667 Bahcc1 protein_coding Interval_115098 chr4 89695814 89696032 + 0 NA Intergenic Intergenic 16487 ENSMUSG00000043753.2 ENSMUSG00000043753 ENSMUST00000052478 Dmrta1 protein_coding Interval_163726 chr9 24939515 24939877 + 0 NA Intergenic Intergenic -13277 ENSMUSG00000110872.1 ENSMUSG00000110872 ENSMUST00000217324 Gm48255 processed_pseudogene Interval_65731 chr16 26198924 26199331 + 0 NA Intergenic Intergenic -157859 ENSMUSG00000090203.2 ENSMUSG00000090203 ENSMUST00000159040 AU015336 sense_intronic Interval_13725 chr10 21446302 21446765 + 0 NA promoter-TSS (ENSMUSG00000112738.1) processed_pseudogene-promoter-TSS (ENSMUSG00000112738.1) -897 ENSMUSG00000112738.1 ENSMUSG00000112738 ENSMUST00000219604 Gm48386 processed_pseudogene Interval_166612 chr9 61314533 61314879 + 0 NA Intergenic Intergenic -20897 ENSMUSG00000111658.1 ENSMUSG00000111658 ENSMUST00000213377 B930092H01Rik lincRNA Interval_73462 chr17 37487755 37488179 + 0 NA Intergenic Intergenic -4415 ENSMUSG00000016283.13 ENSMUSG00000016283 ENSMUST00000171139 H2-M2 protein_coding Interval_14447 chr10 33917014 33917296 + 0 NA Intergenic Intergenic 12044 ENSMUSG00000039552.14 ENSMUSG00000039552 ENSMUST00000169670 Rsph4a protein_coding Interval_51900 chr14 33573622 33574338 + 0 NA intron (ENSMUSG00000108841.1, intron 29 of 29) protein_coding-intron (ENSMUSG00000108841.1, intron 3 of 3) -29129 ENSMUSG00000021940.10 ENSMUSG00000021940 ENSMUST00000226512 Ptpn20 protein_coding Interval_130647 chr5 129429995 129430896 + 0 NA Intergenic Intergenic 66325 ENSMUSG00000104681.1 ENSMUSG00000104681 ENSMUST00000199076 Gm43001 lincRNA Interval_122800 chr5 25620832 25621102 + 0 NA Intergenic Intergenic -38842 ENSMUSG00000106144.1 ENSMUSG00000106144 ENSMUST00000181398 Gm43972 lincRNA Interval_92222 chr2 57111311 57111886 + 0 NA TTS (ENSMUSG00000026826.13) protein_coding-TTS (ENSMUSG00000026826.13) 12405 ENSMUSG00000026826.13 ENSMUSG00000026826 ENSMUST00000128776 Nr4a2 protein_coding Interval_168631 chr9 84510792 84510980 + 0 NA Intergenic Intergenic -67074 ENSMUSG00000111245.1 ENSMUSG00000111245 ENSMUST00000214502 Gm39388 lincRNA Interval_72592 chr17 30874308 30875042 + 0 NA exon (ENSMUSG00000118119.1, exon 1 of 1) antisense-exon (ENSMUSG00000118119.1, exon 1 of 1) 609 ENSMUSG00000118119.1 ENSMUSG00000118119 ENSMUST00000235890 Gm9937 antisense Interval_86993 chr19 45419966 45421295 + 0 NA intron (ENSMUSG00000025217.15, intron 2 of 13) protein_coding-intron (ENSMUSG00000025217.15, intron 1 of 14) 30565 ENSMUSG00000057605.4 ENSMUSG00000057605 ENSMUST00000077435 Gm6807 processed_pseudogene Interval_129951 chr5 123271225 123271569 + 0 NA promoter-TSS (ENSMUSG00000029442.18) protein_coding-promoter-TSS (ENSMUSG00000029442.18) -6731 ENSMUSG00000029442.18 ENSMUSG00000029442 ENSMUST00000125979 Wdr66 protein_coding Interval_174767 chrX 166243497 166243929 + 0 NA intron (ENSMUSG00000031342.17, intron 1 of 6) protein_coding-intron (ENSMUSG00000031342.17, intron 1 of 6) 37859 ENSMUSG00000084080.1 ENSMUSG00000084080 ENSMUST00000121844 Gm15227 processed_pseudogene Interval_168745 chr9 86611559 86611951 + 0 NA intron (ENSMUSG00000032418.15, intron 3 of 7) protein_coding-intron (ENSMUSG00000032418.15, intron 9 of 13) 6949 ENSMUSG00000032418.15 ENSMUSG00000032418 ENSMUST00000189847 Me1 protein_coding Interval_120753 chr4 150455268 150456010 + 0 NA intron (ENSMUSG00000039852.17, intron 4 of 22) protein_coding-intron (ENSMUSG00000039852.17, intron 4 of 22) 112905 ENSMUSG00000085213.1 ENSMUSG00000085213 ENSMUST00000128800 Gm13091 antisense Interval_101165 chr2 178702752 178702949 + 0 NA Intergenic Intergenic 242220 ENSMUSG00000039155.15 ENSMUSG00000039155 ENSMUST00000176869 Cdh26 protein_coding Interval_137329 chr6 71398186 71399437 + 0 NA intron (ENSMUSG00000002222.14, intron 1 of 5) protein_coding-intron (ENSMUSG00000002222.14, intron 5 of 8) 482 ENSMUSG00000002222.14 ENSMUSG00000002222 ENSMUST00000123947 Rmnd5a protein_coding Interval_46830 chr13 71820400 71820825 + 0 NA intron (ENSMUSG00000114038.1, intron 1 of 7) processed_transcript-intron (ENSMUSG00000114038.1, intron 1 of 7) -34717 ENSMUSG00000114038.1 ENSMUSG00000114038 ENSMUST00000223183 Gm40999 processed_transcript Interval_119017 chr4 135026886 135027871 + 0 NA Intergenic Intergenic 93069 ENSMUSG00000086884.1 ENSMUSG00000086884 ENSMUST00000146152 Gm16225 lincRNA Interval_128963 chr5 116331079 116331321 + 0 NA Intergenic Intergenic 18840 ENSMUSG00000086715.1 ENSMUSG00000086715 ENSMUST00000128473 B230112J18Rik lincRNA Interval_33801 chr11 118615137 118615474 + 0 NA intron (ENSMUSG00000025576.17, intron 3 of 14) protein_coding-intron (ENSMUSG00000025576.17, intron 3 of 14) -107952 ENSMUSG00000025576.17 ENSMUSG00000025576 ENSMUST00000134774 Rbfox3 protein_coding Interval_145785 chr7 38257986 38258511 + 0 NA Intergenic Intergenic 13079 ENSMUSG00000030423.7 ENSMUSG00000030423 ENSMUST00000206045 Pop4 protein_coding Interval_139316 chr6 98609092 98609557 + 0 NA intron (ENSMUSG00000107614.1, intron 2 of 4) lincRNA-intron (ENSMUSG00000107614.1, intron 2 of 4) -57217 ENSMUSG00000107929.1 ENSMUSG00000107929 ENSMUST00000204069 4930595L18Rik lincRNA Interval_143339 chr7 5882414 5882615 + 0 NA Intergenic Intergenic 2028 ENSMUSG00000118388.1 ENSMUSG00000118388 ENSMUST00000078475 Vmn1r64 protein_coding Interval_137593 chr6 74214713 74215548 + 0 NA Intergenic Intergenic -125820 ENSMUSG00000093964.1 ENSMUSG00000093964 ENSMUST00000177723 Gm26179 snoRNA Interval_104972 chr3 79427105 79427991 + 0 NA intron (ENSMUSG00000091685.6, intron 3 of 4) protein_coding-intron (ENSMUSG00000091685.6, intron 3 of 4) 82169 ENSMUSG00000091685.6 ENSMUSG00000091685 ENSMUST00000199658 Gm17359 protein_coding Interval_30969 chr11 97499960 97501390 + 0 NA promoter-TSS (ENSMUSG00000047988.1) protein_coding-promoter-TSS (ENSMUSG00000047988.1) -335 ENSMUSG00000047988.1 ENSMUSG00000047988 ENSMUST00000056955 4933428G20Rik protein_coding Interval_111803 chr4 30314336 30314604 + 0 NA Intergenic Intergenic -117642 ENSMUSG00000087180.1 ENSMUSG00000087180 ENSMUST00000152306 Gm11924 lincRNA Interval_126849 chr5 94369033 94369833 + 0 NA intron (ENSMUSG00000073497.6, intron 1 of 2) protein_coding-intron (ENSMUSG00000073497.6, intron 1 of 2) -7884 ENSMUSG00000073497.6 ENSMUSG00000073497 ENSMUST00000202253 AA792892 protein_coding Interval_29645 chr11 85784827 85786612 + 0 NA intron (ENSMUSG00000059439.15, intron 1 of 4) protein_coding-intron (ENSMUSG00000059439.15, intron 23 of 24) 6907 ENSMUSG00000089508.1 ENSMUSG00000089508 ENSMUST00000158883 Gm23473 rRNA Interval_131737 chr5 139572187 139572816 + 0 NA Intergenic Intergenic 28603 ENSMUSG00000029546.12 ENSMUSG00000029546 ENSMUST00000174792 Uncx protein_coding Interval_133263 chr5 150936077 150936354 + 0 NA Intergenic Intergenic -16489 ENSMUSG00000058488.7 ENSMUSG00000058488 ENSMUST00000202096 Kl protein_coding Interval_37841 chr12 72433209 72433492 + 0 NA Intergenic Intergenic -8685 ENSMUSG00000021090.16 ENSMUSG00000021090 ENSMUST00000221282 Lrrc9 protein_coding Interval_171901 chr9 122247526 122248475 + 0 NA TTS (ENSMUSG00000037949.8) protein_coding-TTS (ENSMUSG00000037949.8) 26028 ENSMUSG00000098922.1 ENSMUSG00000098922 ENSMUST00000184520 Mir8106 miRNA Interval_40460 chr12 105019360 105020069 + 0 NA Intergenic Intergenic -1645 ENSMUSG00000113995.1 ENSMUSG00000113995 ENSMUST00000222271 Gm47648 lincRNA Interval_25941 chr11 52820020 52821308 + 0 NA intron (ENSMUSG00000036264.9, intron 3 of 15) protein_coding-intron (ENSMUSG00000036264.9, intron 3 of 15) 56030 ENSMUSG00000036264.9 ENSMUSG00000036264 ENSMUST00000036796 Fstl4 protein_coding Interval_133925 chr6 15720066 15721743 + 0 NA promoter-TSS (ENSMUSG00000041390.18) protein_coding-promoter-TSS (ENSMUSG00000041390.18) 243 ENSMUSG00000041390.18 ENSMUSG00000041390 ENSMUST00000128849 Mdfic protein_coding Interval_9281 chr1 155800988 155801385 + 0 NA TTS (ENSMUSG00000033684.14) protein_coding-TTS (ENSMUSG00000033684.14) 12062 ENSMUSG00000102299.1 ENSMUSG00000102299 ENSMUST00000192644 Gm37539 TEC Interval_37107 chr12 58458040 58459403 + 0 NA Intergenic Intergenic -189431 ENSMUSG00000045930.3 ENSMUSG00000045930 ENSMUST00000062254 Clec14a protein_coding Interval_160120 chr8 106579014 106579677 + 0 NA Intergenic Intergenic -5995 ENSMUSG00000060019.6 ENSMUSG00000060019 ENSMUST00000073722 Gm10073 processed_pseudogene Interval_50734 chr14 18704336 18704637 + 0 NA intron (ENSMUSG00000058317.12, intron 4 of 4) protein_coding-intron (ENSMUSG00000058317.12, intron 2 of 4) -109683 ENSMUSG00000077689.1 ENSMUSG00000077689 ENSMUST00000104501 Gm22499 snoRNA Interval_3346 chr1 57331676 57332435 + 0 NA Intergenic Intergenic -39654 ENSMUSG00000101129.1 ENSMUSG00000101129 ENSMUST00000188353 Gm5254 processed_pseudogene Interval_88503 chr2 5667498 5667896 + 0 NA intron (ENSMUSG00000039145.16, intron 1 of 1) protein_coding-intron (ENSMUSG00000039145.16, intron 1 of 10) 46806 ENSMUSG00000039145.16 ENSMUSG00000039145 ENSMUST00000155927 Camk1d protein_coding Interval_119940 chr4 141031455 141032172 + 0 NA intron (ENSMUSG00000040860.16, intron 18 of 34) protein_coding-intron (ENSMUSG00000040860.16, intron 18 of 34) 21395 ENSMUSG00000060572.17 ENSMUSG00000060572 ENSMUST00000071977 Mfap2 protein_coding Interval_168621 chr9 84323551 84323820 + 0 NA Intergenic Intergenic 62870 ENSMUSG00000111616.1 ENSMUSG00000111616 ENSMUST00000215826 Gm18487 processed_pseudogene Interval_27429 chr11 67603966 67604380 + 0 NA exon (ENSMUSG00000033066.16, exon 2 of 2) protein_coding-exon (ENSMUSG00000033066.16, exon 2 of 2) 7609 ENSMUSG00000033066.16 ENSMUSG00000033066 ENSMUST00000133367 Gas7 protein_coding Interval_51921 chr14 33941218 33941493 + 0 NA exon (ENSMUSG00000072625.1, exon 1 of 2) protein_coding-exon (ENSMUSG00000072625.1, exon 1 of 2) 316 ENSMUSG00000072625.1 ENSMUSG00000072625 ENSMUST00000100720 Gdf2 protein_coding Interval_135472 chr6 39492980 39494114 + 0 NA intron (ENSMUSG00000038456.9, intron 7 of 18) protein_coding-intron (ENSMUSG00000038456.9, intron 7 of 18) -7091 ENSMUSG00000038456.9 ENSMUSG00000038456 ENSMUST00000154149 Dennd2a protein_coding Interval_37285 chr12 64799130 64799642 + 0 NA Intergenic Intergenic 13075 ENSMUSG00000091905.3 ENSMUSG00000091905 ENSMUST00000167639 Dnajb6-ps processed_pseudogene Interval_13756 chr10 21845486 21848727 + 0 NA Intergenic Intergenic -2255 ENSMUSG00000097107.1 ENSMUSG00000097107 ENSMUST00000180731 Platr6 lincRNA Interval_7911 chr1 134540533 134541569 + 0 NA TTS (ENSMUSG00000046367.10) protein_coding-TTS (ENSMUSG00000046367.10) 5899 ENSMUSG00000046367.10 ENSMUSG00000046367 ENSMUST00000185836 Mgat4e protein_coding Interval_34292 chr12 3143926 3144532 + 0 NA Intergenic Intergenic -27645 ENSMUSG00000110250.1 ENSMUSG00000110250 ENSMUST00000210657 Gm9077 unprocessed_pseudogene Interval_103992 chr3 56368490 56369538 + 0 NA Intergenic Intergenic 76398 ENSMUSG00000077710.1 ENSMUSG00000077710 ENSMUST00000104522 Gm25727 snoRNA Interval_171768 chr9 120905342 120905750 + 0 NA Intergenic Intergenic 9706 ENSMUSG00000100146.1 ENSMUSG00000100146 ENSMUST00000188320 1700020M21Rik lincRNA Interval_146061 chr7 43609862 43610064 + 0 NA promoter-TSS (ENSMUSG00000055102.15) protein_coding-promoter-TSS (ENSMUSG00000055102.15) 2754 ENSMUSG00000055102.15 ENSMUSG00000055102 ENSMUST00000116324 Zfp819 protein_coding Interval_42940 chr13 21651598 21652972 + 0 NA Intergenic Intergenic -9767 ENSMUSG00000036658.4 ENSMUSG00000036658 ENSMUST00000043081 Olfr11 protein_coding Interval_12707 chr10 4406490 4406832 + 0 NA intron (ENSMUSG00000019763.11, intron 1 of 2) protein_coding-intron (ENSMUSG00000019763.11, intron 11 of 12) -2372 ENSMUSG00000085687.1 ENSMUSG00000085687 ENSMUST00000132184 Gm16153 processed_transcript Interval_96159 chr2 120153782 120155014 + 0 NA promoter-TSS (ENSMUSG00000027293.13) protein_coding-promoter-TSS (ENSMUSG00000027293.13) -16838 ENSMUSG00000027293.13 ENSMUSG00000027293 ENSMUST00000148073 Ehd4 protein_coding Interval_129179 chr5 118014640 118015818 + 0 NA Intergenic Intergenic 12141 ENSMUSG00000107058.1 ENSMUSG00000107058 ENSMUST00000202755 Gm42545 TEC Interval_38325 chr12 77204921 77205805 + 0 NA Intergenic Intergenic 33300 ENSMUSG00000112150.1 ENSMUSG00000112150 ENSMUST00000219513 9530018F02Rik bidirectional_promoter_lncRNA Interval_55250 chr14 79636200 79637007 + 0 NA Intergenic Intergenic 8907 ENSMUSG00000022025.13 ENSMUSG00000022025 ENSMUST00000167524 Cnmd protein_coding Interval_112434 chr4 41245348 41246014 + 0 NA intron (ENSMUSG00000028433.14, intron 1 of 8) protein_coding-intron (ENSMUSG00000028433.14, intron 2 of 28) -6936 ENSMUSG00000081866.1 ENSMUSG00000081866 ENSMUST00000118435 Gm12401 processed_pseudogene Interval_77822 chr18 4097458 4098292 + 0 NA Intergenic Intergenic -45339 ENSMUSG00000117565.1 ENSMUSG00000117565 ENSMUST00000234182 Gm6248 processed_pseudogene Interval_157666 chr8 72171692 72172754 + 0 NA intron (ENSMUSG00000003037.16, intron 3 of 4) protein_coding-intron (ENSMUSG00000003037.16, intron 3 of 7) 10910 ENSMUSG00000003037.16 ENSMUSG00000003037 ENSMUST00000128203 Rab8a protein_coding Interval_108442 chr3 127248928 127249370 + 0 NA intron (ENSMUSG00000032826.19, intron 2 of 15) protein_coding-intron (ENSMUSG00000032826.19, intron 2 of 14) -5374 ENSMUSG00000105733.1 ENSMUSG00000105733 ENSMUST00000197913 Gm42973 TEC Interval_42545 chr13 15071713 15072179 + 0 NA Intergenic Intergenic 46685 ENSMUSG00000113240.1 ENSMUSG00000113240 ENSMUST00000221976 Gm48338 processed_pseudogene Interval_138582 chr6 89573180 89573706 + 0 NA intron (ENSMUSG00000030086.16, intron 2 of 2) protein_coding-intron (ENSMUSG00000030086.16, intron 2 of 7) 22161 ENSMUSG00000030086.16 ENSMUSG00000030086 ENSMUST00000204654 Chchd6 protein_coding Interval_54056 chr14 64832844 64833194 + 0 NA intron (ENSMUSG00000021972.14, intron 5 of 9) protein_coding-intron (ENSMUSG00000021972.14, intron 6 of 10) -6081 ENSMUSG00000098837.1 ENSMUSG00000098837 ENSMUST00000184830 Gm20111 processed_pseudogene Interval_123736 chr5 35032902 35033669 + 0 NA TTS (ENSMUSG00000029101.16) protein_coding-TTS (ENSMUSG00000029101.16) 160 ENSMUSG00000107040.1 ENSMUSG00000107040 ENSMUST00000202914 Gm43791 antisense Interval_124619 chr5 52475882 52477051 + 0 NA Intergenic Intergenic 35307 ENSMUSG00000106380.1 ENSMUSG00000106380 ENSMUST00000196113 Gm3519 antisense Interval_159527 chr8 95241226 95243121 + 0 NA intron (ENSMUSG00000031789.17, intron 20 of 20) protein_coding-intron (ENSMUSG00000031789.17, intron 32 of 32) 58493 ENSMUSG00000031789.17 ENSMUSG00000031789 ENSMUST00000212237 Cngb1 protein_coding Interval_368 chr1 4630921 4631255 + 0 NA Intergenic Intergenic 20617 ENSMUSG00000102735.1 ENSMUSG00000102735 ENSMUST00000192738 Gm7369 processed_pseudogene Interval_156761 chr8 58163775 58164267 + 0 NA intron (ENSMUSG00000096914.3, intron 5 of 12) protein_coding-intron (ENSMUSG00000096914.3, intron 5 of 12) -82566 ENSMUSG00000109963.1 ENSMUSG00000109963 ENSMUST00000211516 Gm45635 TEC Interval_139974 chr6 113142631 113142860 + 0 NA intron (ENSMUSG00000034269.12, intron 2 of 6) protein_coding-intron (ENSMUSG00000034269.12, intron 17 of 21) 32328 ENSMUSG00000034269.12 ENSMUSG00000034269 ENSMUST00000156048 Setd5 protein_coding Interval_123323 chr5 31432757 31435102 + 0 NA Intergenic Intergenic -16895 ENSMUSG00000106866.1 ENSMUSG00000106866 ENSMUST00000200894 Gm43659 processed_pseudogene Interval_97756 chr2 143862375 143863268 + 0 NA exon (ENSMUSG00000027420.13, exon 1 of 8) protein_coding-exon (ENSMUSG00000027420.13, exon 1 of 8) 122 ENSMUSG00000027420.13 ENSMUSG00000027420 ENSMUST00000028907 Bfsp1 protein_coding Interval_149716 chr7 100893989 100895148 + 0 NA exon (ENSMUSG00000032875.8, exon 1 of 21) protein_coding-exon (ENSMUSG00000032875.8, exon 1 of 21) 122 ENSMUSG00000032875.8 ENSMUSG00000032875 ENSMUST00000208735 Arhgef17 protein_coding Interval_67097 chr16 42911891 42912212 + 0 NA promoter-TSS (ENSMUSG00000116903.1) antisense-promoter-TSS (ENSMUSG00000116903.1) 14 ENSMUSG00000116903.1 ENSMUSG00000116903 ENSMUST00000231971 Gm19522 antisense Interval_72311 chr17 29099965 29101061 + 0 NA TTS (ENSMUSG00000023067.14) protein_coding-TTS (ENSMUSG00000023067.14) -6052 ENSMUSG00000117050.1 ENSMUSG00000117050 ENSMUST00000233069 1700023B13Rik TEC Interval_85244 chr19 24140298 24140694 + 0 NA intron (ENSMUSG00000024812.11, intron 1 of 22) protein_coding-intron (ENSMUSG00000024812.11, intron 1 of 22) 6571 ENSMUSG00000024812.11 ENSMUSG00000024812 ENSMUST00000237550 Tjp2 protein_coding Interval_155587 chr8 34903705 34904436 + 0 NA intron (ENSMUSG00000031529.5, intron 3 of 26) protein_coding-intron (ENSMUSG00000031529.5, intron 3 of 26) 14698 ENSMUSG00000031529.5 ENSMUSG00000031529 ENSMUST00000211065 Tnks protein_coding Interval_68886 chr16 87796774 87797154 + 0 NA intron (ENSMUSG00000055972.5, intron 1 of 5) lincRNA-intron (ENSMUSG00000055972.5, intron 1 of 5) 9392 ENSMUSG00000055972.5 ENSMUSG00000055972 ENSMUST00000189929 2810407A14Rik lincRNA Interval_161552 chr8 121147961 121148343 + 0 NA intron (ENSMUSG00000092329.1, intron 1 of 15) protein_coding-intron (ENSMUSG00000092329.1, intron 1 of 15) 7209 ENSMUSG00000103830.1 ENSMUSG00000103830 ENSMUST00000191778 Gm37609 TEC Interval_136810 chr6 60689365 60689801 + 0 NA Intergenic Intergenic 81476 ENSMUSG00000107755.1 ENSMUSG00000107755 ENSMUST00000204513 Mageb16-ps2 processed_pseudogene Interval_137122 chr6 67735231 67735606 + 0 NA exon (ENSMUSG00000104843.1, exon 1 of 1) processed_pseudogene-exon (ENSMUSG00000104843.1, exon 1 of 1) 186 ENSMUSG00000104843.1 ENSMUSG00000104843 ENSMUST00000196752 Gm5308 processed_pseudogene Interval_161878 chr8 123384599 123385367 + 0 NA intron (ENSMUSG00000001472.17, intron 5 of 17) protein_coding-intron (ENSMUSG00000001472.17, intron 5 of 17) -14347 ENSMUSG00000001472.17 ENSMUSG00000001472 ENSMUST00000212996 Tcf25 protein_coding Interval_161360 chr8 119944012 119945057 + 0 NA intron (ENSMUSG00000031826.20, intron 1 of 4) protein_coding-intron (ENSMUSG00000031826.20, intron 1 of 6) -1866 ENSMUSG00000031826.20 ENSMUSG00000031826 ENSMUST00000139648 Usp10 protein_coding Interval_46725 chr13 69646262 69647062 + 0 NA Intergenic Intergenic 8850 ENSMUSG00000113790.1 ENSMUSG00000113790 ENSMUST00000222550 Gm17872 processed_pseudogene Interval_75211 chr17 64736971 64737738 + 0 NA intron (ENSMUSG00000024085.13, intron 5 of 6) protein_coding-intron (ENSMUSG00000024085.13, intron 19 of 21) 16742 ENSMUSG00000091160.1 ENSMUSG00000091160 ENSMUST00000170636 Gm17133 antisense Interval_26376 chr11 57479390 57481203 + 0 NA Intergenic Intergenic 31189 ENSMUSG00000082476.1 ENSMUSG00000082476 ENSMUST00000118824 Gm12242 processed_pseudogene Interval_128256 chr5 112085301 112086118 + 0 NA Intergenic Intergenic -70528 ENSMUSG00000104538.1 ENSMUSG00000104538 ENSMUST00000197688 1700016B01Rik lincRNA Interval_87637 chr19 53858559 53859848 + 0 NA intron (ENSMUSG00000043639.15, intron 12 of 13) protein_coding-intron (ENSMUSG00000043639.15, intron 5 of 6) -24164 ENSMUSG00000117693.1 ENSMUSG00000117693 ENSMUST00000235418 Gm50272 processed_pseudogene Interval_13105 chr10 11410795 11411442 + 0 NA intron (ENSMUSG00000055493.4, intron 2 of 3) protein_coding-intron (ENSMUSG00000055493.4, intron 2 of 3) -23515 ENSMUSG00000090242.1 ENSMUSG00000090242 ENSMUST00000161946 Rpl17-ps11 processed_pseudogene Interval_170124 chr9 105068849 105069134 + 0 NA TTS (ENSMUSG00000104344.1) TEC-TTS (ENSMUSG00000104344.1) 4186 ENSMUSG00000032563.16 ENSMUSG00000032563 ENSMUST00000139022 Mrpl3 protein_coding Interval_45350 chr13 54610801 54611851 + 0 NA promoter-TSS (ENSMUSG00000047547.14) protein_coding-promoter-TSS (ENSMUSG00000047547.14) -34 ENSMUSG00000047547.14 ENSMUSG00000047547 ENSMUST00000146301 Cltb protein_coding Interval_107575 chr3 108587830 108588834 + 0 NA Intergenic Intergenic 14483 ENSMUSG00000081499.1 ENSMUSG00000081499 ENSMUST00000122082 Gm12517 processed_pseudogene Interval_30748 chr11 96255361 96256592 + 0 NA intron (ENSMUSG00000078706.4, intron 1 of 1) lincRNA-intron (ENSMUSG00000078706.4, intron 1 of 2) 4332 ENSMUSG00000078706.4 ENSMUSG00000078706 ENSMUST00000143887 Gm53 lincRNA Interval_95974 chr2 118844054 118844408 + 0 NA intron (ENSMUSG00000027331.15, intron 1 of 1) protein_coding-intron (ENSMUSG00000027331.15, intron 1 of 1) -10109 ENSMUSG00000086421.1 ENSMUSG00000086421 ENSMUST00000133534 Gm14091 antisense Interval_71534 chr17 24391141 24391634 + 0 NA intron (ENSMUSG00000024130.16, intron 18 of 24) protein_coding-intron (ENSMUSG00000024130.16, intron 18 of 32) 23020 ENSMUSG00000073437.10 ENSMUSG00000073437 ENSMUST00000180579 D330041H03Rik processed_transcript Interval_50045 chr13 120179614 120180034 + 0 NA Intergenic Intergenic 7391 ENSMUSG00000095653.2 ENSMUSG00000095653 ENSMUST00000178828 Gm21818 protein_coding Interval_15793 chr10 56795039 56796312 + 0 NA Intergenic Intergenic 33632 ENSMUSG00000112191.1 ENSMUSG00000112191 ENSMUST00000219666 Gm31931 processed_pseudogene Interval_153795 chr8 8674618 8675922 + 0 NA intron (ENSMUSG00000040459.11, intron 2 of 2) protein_coding-intron (ENSMUSG00000040459.11, intron 3 of 3) 13469 ENSMUSG00000040467.1 ENSMUSG00000040467 ENSMUST00000048606 4921522P10Rik lincRNA Interval_100676 chr2 171248817 171249082 + 0 NA intron (ENSMUSG00000084829.7, intron 1 of 3) lincRNA-intron (ENSMUSG00000084829.7, intron 1 of 3) -4335 ENSMUSG00000084829.7 ENSMUSG00000084829 ENSMUST00000146542 Gm14266 lincRNA Interval_15143 chr10 42869557 42869869 + 0 NA intron (ENSMUSG00000044770.14, intron 1 of 2) protein_coding-intron (ENSMUSG00000044770.14, intron 1 of 8) -5473 ENSMUSG00000111293.1 ENSMUSG00000111293 ENSMUST00000213985 Gm34006 antisense Interval_140493 chr6 118795553 118796424 + 0 NA intron (ENSMUSG00000051331.16, intron 3 of 47) protein_coding-intron (ENSMUSG00000051331.16, intron 3 of 46) -38912 ENSMUSG00000089115.1 ENSMUSG00000089115 ENSMUST00000158490 Gm25905 snRNA Interval_75349 chr17 66061140 66061816 + 0 NA intron (ENSMUSG00000034647.15, intron 1 of 8) protein_coding-intron (ENSMUSG00000034647.15, intron 1 of 12) -24616 ENSMUSG00000094158.1 ENSMUSG00000094158 ENSMUST00000083372 Gm23264 snRNA Interval_80388 chr18 41196557 41196842 + 0 NA Intergenic Intergenic 145672 ENSMUSG00000105169.1 ENSMUSG00000105169 ENSMUST00000196225 Gm44476 miRNA Interval_152614 chr7 135332274 135333502 + 0 NA Intergenic Intergenic -55742 ENSMUSG00000109891.1 ENSMUSG00000109891 ENSMUST00000210823 Gm45339 lincRNA Interval_147684 chr7 71966266 71966449 + 0 NA intron (ENSMUSG00000108800.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000108800.1, intron 1 of 2) -4339 ENSMUSG00000108480.1 ENSMUSG00000108480 ENSMUST00000205873 Gm36633 lincRNA Interval_45058 chr13 51776834 51777466 + 0 NA promoter-TSS (ENSMUSG00000021451.16) protein_coding-promoter-TSS (ENSMUSG00000021451.16) 11856 ENSMUSG00000092648.1 ENSMUSG00000092648 ENSMUST00000174907 Gm23566 miRNA Interval_79004 chr18 23868754 23869755 + 0 NA intron (ENSMUSG00000024277.14, intron 5 of 7) protein_coding-intron (ENSMUSG00000024277.14, intron 4 of 6) -51883 ENSMUSG00000089290.1 ENSMUSG00000089290 ENSMUST00000158665 Gm23207 snRNA Interval_74529 chr17 52988573 52989778 + 0 NA Intergenic Intergenic 39115 ENSMUSG00000035580.10 ENSMUSG00000035580 ENSMUST00000184279 Kcnh8 protein_coding Interval_36979 chr12 55860202 55861436 + 0 NA intron (ENSMUSG00000012076.8, intron 5 of 9) protein_coding-intron (ENSMUSG00000012076.8, intron 5 of 9) 24415 ENSMUSG00000012076.8 ENSMUSG00000012076 ENSMUST00000219575 Brms1l protein_coding Interval_66130 chr16 31850171 31850522 + 0 NA intron (ENSMUSG00000022770.17, intron 1 of 4) protein_coding-intron (ENSMUSG00000022770.17, intron 18 of 24) -28464 ENSMUSG00000022780.5 ENSMUSG00000022780 ENSMUST00000023464 Meltf protein_coding Interval_113698 chr4 57720964 57721385 + 0 NA intron (ENSMUSG00000038729.24, intron 1 of 2) protein_coding-intron (ENSMUSG00000038729.24, intron 1 of 2) -41433 ENSMUSG00000089286.1 ENSMUSG00000089286 ENSMUST00000158661 Gm24277 snRNA Interval_113967 chr4 62063291 62063614 + 0 NA Intergenic Intergenic -9294 ENSMUSG00000078672.2 ENSMUSG00000078672 ENSMUST00000074018 Mup20 protein_coding Interval_114201 chr4 67068056 67068277 + 0 NA Intergenic Intergenic -97313 ENSMUSG00000081435.1 ENSMUSG00000081435 ENSMUST00000122195 Gm11403 processed_pseudogene Interval_31120 chr11 98264862 98265602 + 0 NA intron (ENSMUSG00000003119.14, intron 6 of 7) protein_coding-intron (ENSMUSG00000003119.14, intron 2 of 2) 2626 ENSMUSG00000093176.1 ENSMUSG00000093176 ENSMUST00000175435 Mir5119 miRNA Interval_14267 chr10 30109729 30110007 + 0 NA Intergenic Intergenic -24534 ENSMUSG00000111001.1 ENSMUSG00000111001 ENSMUST00000215786 Gm8767 processed_pseudogene Interval_50115 chr14 8080047 8081370 + 0 NA intron (ENSMUSG00000023156.4, intron 1 of 5) protein_coding-intron (ENSMUSG00000023156.4, intron 1 of 5) -9370 ENSMUSG00000023156.4 ENSMUSG00000023156 ENSMUST00000180369 Rpp14 protein_coding Interval_164058 chr9 31221000 31221734 + 0 NA Intergenic Intergenic -53454 ENSMUSG00000091003.2 ENSMUSG00000091003 ENSMUST00000164658 Gm7244 processed_pseudogene Interval_36484 chr12 45832547 45835279 + 0 NA Intergenic Intergenic -97012 ENSMUSG00000112859.1 ENSMUSG00000112859 ENSMUST00000220114 Gm48522 lincRNA Interval_76445 chr17 80241554 80242128 + 0 NA intron (ENSMUSG00000035051.15, intron 23 of 23) protein_coding-intron (ENSMUSG00000035051.15, intron 22 of 22) -5261 ENSMUSG00000117440.1 ENSMUSG00000117440 ENSMUST00000234217 Gm50087 antisense Interval_97279 chr2 132903556 132903975 + 0 NA TTS (ENSMUSG00000027356.8) protein_coding-TTS (ENSMUSG00000027356.8) -22874 ENSMUSG00000043110.2 ENSMUSG00000043110 ENSMUST00000049787 Lrrn4 protein_coding Interval_118164 chr4 129306763 129307677 + 0 NA exon (ENSMUSG00000057236.10, exon 12 of 12) protein_coding-exon (ENSMUSG00000057236.10, exon 12 of 12) 19589 ENSMUSG00000001333.9 ENSMUSG00000001333 ENSMUST00000146448 Sync protein_coding Interval_46297 chr13 63512862 63513902 + 0 NA intron (ENSMUSG00000021466.12, intron 20 of 21) protein_coding-intron (ENSMUSG00000021466.12, intron 22 of 22) 26296 ENSMUSG00000021466.12 ENSMUSG00000021466 ENSMUST00000220588 Ptch1 protein_coding Interval_143543 chr7 12421769 12423181 + 0 NA promoter-TSS (ENSMUSG00000034071.15) protein_coding-promoter-TSS (ENSMUSG00000034071.15) -36 ENSMUSG00000034071.15 ENSMUSG00000034071 ENSMUST00000123877 Zfp551 protein_coding Interval_159886 chr8 104654352 104655622 + 0 NA intron (ENSMUSG00000023737.14, intron 1 of 2) antisense-intron (ENSMUSG00000023737.14, intron 1 of 2) -13022 ENSMUSG00000031879.14 ENSMUSG00000031879 ENSMUST00000093234 Ciao2b protein_coding Interval_20784 chr10 120929692 120929933 + 0 NA TTS (ENSMUSG00000082936.1) processed_pseudogene-TTS (ENSMUSG00000082936.1) 1626 ENSMUSG00000082936.1 ENSMUSG00000082936 ENSMUST00000118291 Gm16166 processed_pseudogene Interval_123049 chr5 29229146 29229608 + 0 NA TTS (ENSMUSG00000010721.15) protein_coding-TTS (ENSMUSG00000010721.15) 11653 ENSMUSG00000089975.2 ENSMUSG00000089975 ENSMUST00000162836 Gm7420 transcribed_processed_pseudogene Interval_83535 chr18 88945788 88946878 + 0 NA Intergenic Intergenic 8187 ENSMUSG00000117777.1 ENSMUSG00000117777 ENSMUST00000235800 Gm50267 processed_pseudogene Interval_162126 chr8 125354238 125354689 + 0 NA Intergenic Intergenic -127140 ENSMUSG00000086694.1 ENSMUSG00000086694 ENSMUST00000156666 Gm16237 antisense Interval_115946 chr4 106490527 106490885 + 0 NA intron (ENSMUSG00000118551.1, intron 2 of 3) protein_coding-intron (ENSMUSG00000025418.7, intron 1 of 3) 1577 ENSMUSG00000025418.7 ENSMUSG00000025418 ENSMUST00000054472 Bsnd protein_coding Interval_72821 chr17 32382671 32382992 + 0 NA intron (ENSMUSG00000024050.18, intron 1 of 10) protein_coding-intron (ENSMUSG00000024050.18, intron 1 of 7) 4857 ENSMUSG00000024050.18 ENSMUSG00000024050 ENSMUST00000170603 Wiz protein_coding Interval_57271 chr15 8262967 8264116 + 0 NA intron (ENSMUSG00000039801.7, intron 50 of 52) protein_coding-intron (ENSMUSG00000039801.7, intron 50 of 52) 40398 ENSMUSG00000039801.7 ENSMUSG00000039801 ENSMUST00000128772 Cplane1 protein_coding Interval_82133 chr18 67930528 67934252 + 0 NA promoter-TSS (ENSMUSG00000024544.9) protein_coding-promoter-TSS (ENSMUSG00000024544.9) 24762 ENSMUSG00000118326.1 ENSMUSG00000118326 ENSMUST00000235570 Gm8887 processed_pseudogene Interval_80174 chr18 38025010 38026400 + 0 NA intron (ENSMUSG00000118056.1, intron 2 of 3) lincRNA-intron (ENSMUSG00000118056.1, intron 2 of 3) 2176 ENSMUSG00000118056.1 ENSMUSG00000118056 ENSMUST00000236681 Gm30093 lincRNA Interval_151658 chr7 125752899 125753827 + 0 NA intron (ENSMUSG00000032743.15, intron 2 of 3) protein_coding-intron (ENSMUSG00000032743.15, intron 3 of 27) 45446 ENSMUSG00000032743.15 ENSMUSG00000032743 ENSMUST00000155059 D430042O09Rik protein_coding Interval_174818 chrX 167380111 167380395 + 0 NA intron (ENSMUSG00000025742.5, intron 1 of 2) protein_coding-intron (ENSMUSG00000025742.5, intron 1 of 6) 2457 ENSMUSG00000025742.5 ENSMUSG00000025742 ENSMUST00000145456 Prps2 protein_coding Interval_113953 chr4 61743997 61744822 + 0 NA Intergenic Intergenic -5666 ENSMUSG00000095307.1 ENSMUSG00000095307 ENSMUST00000118158 Gm12573 processed_pseudogene Interval_164346 chr9 35545666 35545949 + 0 NA intron (ENSMUSG00000032101.6, intron 10 of 11) protein_coding-intron (ENSMUSG00000032101.6, intron 10 of 11) 12721 ENSMUSG00000032101.6 ENSMUSG00000032101 ENSMUST00000034612 Ddx25 protein_coding Interval_2223 chr1 37154820 37155066 + 0 NA intron (ENSMUSG00000050122.19, intron 1 of 11) protein_coding-intron (ENSMUSG00000050122.19, intron 17 of 24) -21679 ENSMUSG00000103603.1 ENSMUSG00000103603 ENSMUST00000195303 Gm37020 antisense Interval_62119 chr15 87334426 87334681 + 0 NA Intergenic Intergenic 91003 ENSMUSG00000115930.1 ENSMUSG00000115930 ENSMUST00000229090 A930027H12Rik lincRNA Interval_59395 chr15 52125084 52125839 + 0 NA Intergenic Intergenic 36153 ENSMUSG00000115457.1 ENSMUSG00000115457 ENSMUST00000227885 Gm2387 processed_pseudogene Interval_470 chr1 6015517 6016070 + 0 NA Intergenic Intergenic 34252 ENSMUSG00000103090.1 ENSMUSG00000103090 ENSMUST00000191956 Gm19214 processed_pseudogene Interval_108800 chr3 131581188 131581425 + 0 NA intron (ENSMUSG00000028032.13, intron 5 of 14) protein_coding-intron (ENSMUSG00000028032.13, intron 2 of 11) 16407 ENSMUSG00000028032.13 ENSMUSG00000028032 ENSMUST00000196638 Papss1 protein_coding Interval_90032 chr2 27414035 27414936 + 0 NA intron (ENSMUSG00000009621.18, intron 1 of 27) protein_coding-intron (ENSMUSG00000009621.18, intron 1 of 27) 12427 ENSMUSG00000009621.18 ENSMUSG00000009621 ENSMUST00000132642 Vav2 protein_coding Interval_142208 chr6 138583474 138583750 + 0 NA intron (ENSMUSG00000100166.1, intron 2 of 3) antisense-intron (ENSMUSG00000100166.1, intron 2 of 3) 2988 ENSMUSG00000100166.1 ENSMUSG00000100166 ENSMUST00000190868 B230110G15Rik antisense Interval_9347 chr1 156487456 156487700 + 0 NA Intergenic Intergenic -13338 ENSMUSG00000026600.12 ENSMUSG00000026600 ENSMUST00000188027 Soat1 protein_coding Interval_45062 chr13 51807616 51808760 + 0 NA Intergenic Intergenic -14524 ENSMUSG00000021451.16 ENSMUSG00000021451 ENSMUST00000155896 Sema4d protein_coding Interval_130291 chr5 125454508 125454841 + 0 NA TTS (ENSMUSG00000037905.13) protein_coding-TTS (ENSMUSG00000037905.13) 12924 ENSMUSG00000037905.13 ENSMUSG00000037905 ENSMUST00000198811 Bri3bp protein_coding Interval_31224 chr11 98990814 98993161 + 0 NA TTS (ENSMUSG00000020914.17) protein_coding-TTS (ENSMUSG00000020914.17) 3737 ENSMUSG00000020914.17 ENSMUSG00000020914 ENSMUST00000129777 Top2a protein_coding Interval_90373 chr2 30056925 30057425 + 0 NA promoter-TSS (ENSMUSG00000054766.13) protein_coding-promoter-TSS (ENSMUSG00000054766.13) -4579 ENSMUSG00000054766.13 ENSMUSG00000054766 ENSMUST00000147590 Set protein_coding Interval_49636 chr13 113712192 113712590 + 0 NA Intergenic Intergenic 40073 ENSMUSG00000114417.1 ENSMUSG00000114417 ENSMUST00000223766 Gm34586 lincRNA Interval_170648 chr9 109892467 109893205 + 0 NA TTS (ENSMUSG00000032477.14) protein_coding-TTS (ENSMUSG00000032477.14) 3193 ENSMUSG00000098490.1 ENSMUSG00000098490 ENSMUST00000184522 Mir7089 miRNA Interval_124830 chr5 55935029 55935306 + 0 NA Intergenic Intergenic -142280 ENSMUSG00000105678.1 ENSMUSG00000105678 ENSMUST00000195958 Gm43705 TEC Interval_71613 chr17 24863800 24864515 + 0 NA TTS (ENSMUSG00000024158.17) protein_coding-TTS (ENSMUSG00000024158.17) -13499 ENSMUSG00000046070.9 ENSMUSG00000046070 ENSMUST00000234754 Igfals protein_coding Interval_50973 chr14 21439721 21440247 + 0 NA intron (ENSMUSG00000039197.10, intron 10 of 10) protein_coding-intron (ENSMUSG00000039197.10, intron 10 of 10) -10490 ENSMUSG00000088873.1 ENSMUSG00000088873 ENSMUST00000158248 Gm25864 snRNA Interval_99525 chr2 162961305 162961529 + 0 NA exon (ENSMUSG00000035576.13, exon 12 of 23) protein_coding-exon (ENSMUSG00000035576.13, exon 12 of 23) 17942 ENSMUSG00000035576.13 ENSMUSG00000035576 ENSMUST00000125296 L3mbtl1 protein_coding Interval_99965 chr2 166142276 166144444 + 0 NA intron (ENSMUSG00000006800.14, intron 1 of 21) protein_coding-intron (ENSMUSG00000006800.14, intron 1 of 20) 12303 ENSMUSG00000006800.14 ENSMUSG00000006800 ENSMUST00000133395 Sulf2 protein_coding Interval_42599 chr13 16499716 16500680 + 0 NA Intergenic Intergenic 33623 ENSMUSG00000113972.1 ENSMUSG00000113972 ENSMUST00000222545 Gm48497 processed_pseudogene Interval_144222 chr7 20448285 20448576 + 0 NA Intergenic Intergenic -5837 ENSMUSG00000094545.1 ENSMUSG00000094545 ENSMUST00000164245 Vmn1r101 protein_coding Interval_77323 chr17 88006015 88006606 + 0 NA intron (ENSMUSG00000005371.15, intron 11 of 22) protein_coding-intron (ENSMUSG00000005371.15, intron 11 of 22) 31215 ENSMUSG00000005370.4 ENSMUSG00000005370 ENSMUST00000234756 Msh6 protein_coding Interval_116522 chr4 115014208 115014772 + 0 NA intron (ENSMUSG00000028718.16, intron 5 of 5) protein_coding-intron (ENSMUSG00000028718.16, intron 9 of 16) 7729 ENSMUSG00000028718.16 ENSMUSG00000028718 ENSMUST00000144316 Stil protein_coding Interval_136154 chr6 51547455 51547963 + 0 NA intron (ENSMUSG00000038301.15, intron 1 of 6) protein_coding-intron (ENSMUSG00000038301.15, intron 1 of 6) 3186 ENSMUSG00000038301.15 ENSMUSG00000038301 ENSMUST00000149024 Snx10 protein_coding Interval_84595 chr19 14042726 14043052 + 0 NA Intergenic Intergenic -24518 ENSMUSG00000098074.1 ENSMUSG00000098074 ENSMUST00000182766 Gm26993 processed_pseudogene Interval_50163 chr14 8402865 8403937 + 0 NA Intergenic Intergenic -5516 ENSMUSG00000114533.1 ENSMUSG00000114533 ENSMUST00000224382 Gm8416 processed_pseudogene Interval_99204 chr2 158027812 158029296 + 0 NA promoter-TSS (ENSMUSG00000027650.12) protein_coding-promoter-TSS (ENSMUSG00000027650.12) -138 ENSMUSG00000027651.16 ENSMUSG00000027651 ENSMUST00000135603 Rprd1b protein_coding Interval_170360 chr9 107399325 107400497 + 0 NA promoter-TSS (ENSMUSG00000010066.15) protein_coding-promoter-TSS (ENSMUSG00000010066.15) 30656 ENSMUSG00000091816.1 ENSMUSG00000091816 ENSMUST00000167578 Gm17141 antisense Interval_74755 chr17 56338917 56339509 + 0 NA intron (ENSMUSG00000024201.12, intron 1 of 21) protein_coding-intron (ENSMUSG00000024201.12, intron 1 of 22) 34806 ENSMUSG00000001228.14 ENSMUSG00000001228 ENSMUST00000139654 Uhrf1 protein_coding Interval_129797 chr5 122409677 122410529 + 0 NA exon (ENSMUSG00000105895.1, exon 1 of 1) sense_intronic-exon (ENSMUSG00000105895.1, exon 1 of 1) 1613 ENSMUSG00000105895.1 ENSMUSG00000105895 ENSMUST00000198417 Gm42829 sense_intronic Interval_66735 chr16 36817153 36817651 + 0 NA intron (ENSMUSG00000022838.14, intron 3 of 6) protein_coding-intron (ENSMUSG00000022838.14, intron 2 of 5) -8697 ENSMUSG00000022838.14 ENSMUSG00000022838 ENSMUST00000134556 Eaf2 protein_coding Interval_21205 chr10 127211051 127212111 + 0 NA promoter-TSS (ENSMUSG00000025417.8) protein_coding-promoter-TSS (ENSMUSG00000025417.8) 4 ENSMUSG00000025417.8 ENSMUSG00000025417 ENSMUST00000218386 Pip4k2c protein_coding Interval_113998 chr4 62365990 62366895 + 0 NA intron (ENSMUSG00000066150.12, intron 1 of 4) protein_coding-intron (ENSMUSG00000066150.12, intron 1 of 4) -19059 ENSMUSG00000066150.12 ENSMUSG00000066150 ENSMUST00000122092 Slc31a1 protein_coding Interval_123640 chr5 34175114 34175823 + 0 NA promoter-TSS (ENSMUSG00000037235.13) protein_coding-promoter-TSS (ENSMUSG00000037235.13) 1581 ENSMUSG00000106702.1 ENSMUSG00000106702 ENSMUST00000201771 Gm42846 antisense Interval_132054 chr5 142506281 142506775 + 0 NA exon (ENSMUSG00000029576.17, exon 4 of 15) protein_coding-exon (ENSMUSG00000029576.17, exon 4 of 15) -18959 ENSMUSG00000029576.17 ENSMUSG00000029576 ENSMUST00000129212 Radil protein_coding Interval_78731 chr18 19757506 19758240 + 0 NA Intergenic Intergenic 50780 ENSMUSG00000087960.1 ENSMUSG00000087960 ENSMUST00000157335 Gm25392 misc_RNA Interval_30287 chr11 92910606 92911305 + 0 NA TTS (ENSMUSG00000087810.1) snoRNA-TTS (ENSMUSG00000087810.1) 658 ENSMUSG00000087810.1 ENSMUSG00000087810 ENSMUST00000157185 Gm25113 snoRNA Interval_103217 chr3 36967940 36968431 + 0 NA intron (ENSMUSG00000037270.18, intron 39 of 47) protein_coding-intron (ENSMUSG00000037270.18, intron 41 of 85) 91845 ENSMUSG00000086090.1 ENSMUSG00000086090 ENSMUST00000139667 Gm12531 antisense Interval_69771 chr16 96153410 96154011 + 0 NA exon (ENSMUSG00000023147.17, exon 3 of 4) protein_coding-exon (ENSMUSG00000023147.17, exon 3 of 4) -6126 ENSMUSG00000117129.1 ENSMUSG00000117129 ENSMUST00000233788 Gm49928 antisense Interval_129398 chr5 119736267 119736640 + 0 NA Intergenic Intergenic -45235 ENSMUSG00000086847.1 ENSMUSG00000086847 ENSMUST00000135385 Tbx3os2 lincRNA Interval_45052 chr13 51753603 51755360 + 0 NA intron (ENSMUSG00000021451.16, intron 2 of 16) protein_coding-intron (ENSMUSG00000021451.16, intron 2 of 15) -10813 ENSMUSG00000092648.1 ENSMUSG00000092648 ENSMUST00000174907 Gm23566 miRNA Interval_151915 chr7 127519009 127519592 + 0 NA promoter-TSS (ENSMUSG00000107023.2) protein_coding-promoter-TSS (ENSMUSG00000107023.2) 3152 ENSMUSG00000053877.12 ENSMUSG00000053877 ENSMUST00000189812 Srcap protein_coding Interval_32258 chr11 106555336 106557604 + 0 NA intron (ENSMUSG00000040548.16, intron 1 of 10) protein_coding-intron (ENSMUSG00000040548.16, intron 2 of 11) 10640 ENSMUSG00000040548.16 ENSMUSG00000040548 ENSMUST00000153870 Tex2 protein_coding Interval_44041 chr13 40402028 40402214 + 0 NA Intergenic Intergenic -94067 ENSMUSG00000114248.1 ENSMUSG00000114248 ENSMUST00000226074 Gm8352 processed_pseudogene Interval_46637 chr13 67825180 67825585 + 0 NA exon (ENSMUSG00000030446.17, exon 4 of 4) protein_coding-exon (ENSMUSG00000030446.17, exon 4 of 4) 5603 ENSMUSG00000097276.1 ENSMUSG00000097276 ENSMUST00000181912 4930525G20Rik antisense Interval_86799 chr19 43943327 43943717 + 0 NA Intergenic Intergenic 11206 ENSMUSG00000084641.1 ENSMUSG00000084641 ENSMUST00000122692 n-R5s21 rRNA Interval_164391 chr9 36714499 36714762 + 0 NA intron (ENSMUSG00000032113.16, intron 4 of 5) protein_coding-intron (ENSMUSG00000032113.16, intron 8 of 12) 8115 ENSMUSG00000032113.16 ENSMUSG00000032113 ENSMUST00000172742 Chek1 protein_coding Interval_99704 chr2 164404428 164405200 + 0 NA promoter-TSS (ENSMUSG00000016995.17) protein_coding-promoter-TSS (ENSMUSG00000016995.17) -201 ENSMUSG00000016995.17 ENSMUSG00000016995 ENSMUST00000154940 Matn4 protein_coding Interval_69729 chr16 95899739 95900454 + 0 NA promoter-TSS (ENSMUSG00000085903.1) lincRNA-promoter-TSS (ENSMUSG00000085903.1) -302 ENSMUSG00000085903.1 ENSMUSG00000085903 ENSMUST00000144984 Gm15340 lincRNA Interval_50176 chr14 8620709 8621924 + 0 NA intron (ENSMUSG00000021747.12, intron 4 of 12) protein_coding-intron (ENSMUSG00000021747.12, intron 4 of 15) 44923 ENSMUSG00000021747.12 ENSMUSG00000021747 ENSMUST00000225744 4930452B06Rik protein_coding Interval_80613 chr18 44596517 44596808 + 0 NA intron (ENSMUSG00000071856.10, intron 3 of 18) protein_coding-intron (ENSMUSG00000071856.10, intron 3 of 18) -65441 ENSMUSG00000097610.2 ENSMUSG00000097610 ENSMUST00000202771 A930012L18Rik antisense Interval_114901 chr4 86818235 86818570 + 0 NA exon (ENSMUSG00000082969.1, exon 1 of 1) processed_pseudogene-exon (ENSMUSG00000082969.1, exon 1 of 1) 175 ENSMUSG00000082969.1 ENSMUSG00000082969 ENSMUST00000121575 Gm12630 processed_pseudogene Interval_164895 chr9 42877859 42879008 + 0 NA intron (ENSMUSG00000032017.14, intron 1 of 20) protein_coding-intron (ENSMUSG00000032017.14, intron 1 of 20) -16304 ENSMUSG00000076355.2 ENSMUSG00000076355 ENSMUST00000102400 Gm27509 miRNA Interval_106150 chr3 93700513 93701927 + 0 NA Intergenic Intergenic -6852 ENSMUSG00000104229.1 ENSMUSG00000104229 ENSMUST00000195682 Gm18433 unprocessed_pseudogene Interval_82188 chr18 68632417 68633221 + 0 NA Intergenic Intergenic 50904 ENSMUSG00000118317.1 ENSMUSG00000118317 ENSMUST00000237857 Gm30641 lincRNA Interval_105252 chr3 84208956 84210153 + 0 NA exon (ENSMUSG00000027993.16, exon 2 of 2) protein_coding-exon (ENSMUSG00000027993.16, exon 2 of 2) 35450 ENSMUSG00000104043.1 ENSMUSG00000104043 ENSMUST00000193882 Gm6525 protein_coding Interval_13991 chr10 25319339 25319992 + 0 NA Intergenic Intergenic 21056 ENSMUSG00000112352.1 ENSMUSG00000112352 ENSMUST00000218840 Gm40617 antisense Interval_130324 chr5 125745889 125746129 + 0 NA intron (ENSMUSG00000070498.3, intron 4 of 8) protein_coding-intron (ENSMUSG00000070498.3, intron 4 of 8) 102731 ENSMUSG00000091970.3 ENSMUSG00000091970 ENSMUST00000164138 Gm4868 processed_pseudogene Interval_8750 chr1 150425790 150426909 + 0 NA intron (ENSMUSG00000006005.18, intron 2 of 3) protein_coding-intron (ENSMUSG00000006005.18, intron 28 of 50) -12583 ENSMUSG00000006005.18 ENSMUSG00000006005 ENSMUST00000130779 Tpr protein_coding Interval_46556 chr13 67114764 67115297 + 0 NA exon (ENSMUSG00000074824.3, exon 1 of 1) protein_coding-exon (ENSMUSG00000074824.3, exon 1 of 1) 1233 ENSMUSG00000074824.3 ENSMUSG00000074824 ENSMUST00000189620 Rslcan18 protein_coding Interval_135899 chr6 48546170 48546960 + 0 NA Intergenic Intergenic -8234 ENSMUSG00000073096.11 ENSMUSG00000073096 ENSMUST00000203627 Lrrc61 protein_coding Interval_109749 chr3 146534749 146535935 + 0 NA Intergenic Intergenic -26850 ENSMUSG00000028187.10 ENSMUSG00000028187 ENSMUST00000199079 Rpf1 protein_coding Interval_161081 chr8 117344556 117344947 + 0 NA intron (ENSMUSG00000034390.16, intron 1 of 10) protein_coding-intron (ENSMUSG00000034390.16, intron 1 of 20) -78665 ENSMUSG00000034390.16 ENSMUSG00000034390 ENSMUST00000212884 Cmip protein_coding Interval_55230 chr14 79515124 79515487 + 0 NA promoter-TSS (ENSMUSG00000036461.16) protein_coding-promoter-TSS (ENSMUSG00000036461.16) -381 ENSMUSG00000036461.16 ENSMUSG00000036461 ENSMUST00000227104 Elf1 protein_coding Interval_104779 chr3 73006018 73006281 + 0 NA Intergenic Intergenic 37690 ENSMUSG00000102753.1 ENSMUSG00000102753 ENSMUST00000192141 Gm37056 TEC Interval_82484 chr18 74402268 74402996 + 0 NA Intergenic Intergenic 2024 ENSMUSG00000117898.1 ENSMUSG00000117898 ENSMUST00000238045 Gm8986 processed_pseudogene Interval_124799 chr5 54195035 54195815 + 0 NA Intergenic Intergenic 79568 ENSMUSG00000039156.19 ENSMUSG00000039156 ENSMUST00000202342 Stim2 protein_coding Interval_158916 chr8 87926690 87927968 + 0 NA intron (ENSMUSG00000045333.15, intron 1 of 7) protein_coding-intron (ENSMUSG00000045333.15, intron 1 of 7) 26533 ENSMUSG00000045333.15 ENSMUSG00000045333 ENSMUST00000173092 Zfp423 protein_coding Interval_18757 chr10 90048934 90050126 + 0 NA intron (ENSMUSG00000058589.14, intron 1 of 3) protein_coding-intron (ENSMUSG00000058589.14, intron 3 of 17) 85287 ENSMUSG00000112140.1 ENSMUSG00000112140 ENSMUST00000217774 Gm5780 processed_pseudogene Interval_14089 chr10 26781180 26781459 + 0 NA intron (ENSMUSG00000039031.16, intron 1 of 14) protein_coding-intron (ENSMUSG00000039031.16, intron 1 of 14) 8772 ENSMUSG00000039031.16 ENSMUSG00000039031 ENSMUST00000142284 Arhgap18 protein_coding Interval_135273 chr6 37971240 37971957 + 0 NA Intergenic Intergenic 47013 ENSMUSG00000029830.15 ENSMUSG00000029830 ENSMUST00000040486 Svopl protein_coding Interval_79972 chr18 36366354 36366868 + 0 NA exon (ENSMUSG00000046727.13, exon 2 of 3) protein_coding-exon (ENSMUSG00000046727.13, exon 2 of 3) 24031 ENSMUSG00000046727.13 ENSMUSG00000046727 ENSMUST00000144158 Cystm1 protein_coding Interval_82773 chr18 77002551 77003358 + 0 NA intron (ENSMUSG00000025420.13, intron 5 of 11) protein_coding-intron (ENSMUSG00000025420.13, intron 9 of 13) 44333 ENSMUSG00000025420.13 ENSMUSG00000025420 ENSMUST00000123650 Katnal2 protein_coding Interval_130342 chr5 126217303 126218974 + 0 NA Intergenic Intergenic 171516 ENSMUSG00000094875.1 ENSMUSG00000094875 ENSMUST00000178061 Gm23151 snRNA Interval_142322 chr6 140636500 140637044 + 0 NA promoter-TSS (ENSMUSG00000030232.18) protein_coding-promoter-TSS (ENSMUSG00000030232.18) 34 ENSMUSG00000030232.18 ENSMUSG00000030232 ENSMUST00000160772 Aebp2 protein_coding Interval_165032 chr9 44048505 44049245 + 0 NA TTS (ENSMUSG00000032011.5) protein_coding-TTS (ENSMUSG00000032011.5) 3203 ENSMUSG00000032011.5 ENSMUSG00000032011 ENSMUST00000213733 Thy1 protein_coding Interval_66141 chr16 31924757 31925526 + 0 NA exon (ENSMUSG00000083890.1, exon 1 of 1) processed_pseudogene-exon (ENSMUSG00000083890.1, exon 1 of 1) 152 ENSMUSG00000083890.1 ENSMUSG00000083890 ENSMUST00000120250 Gm15703 processed_pseudogene Interval_42215 chr13 10040666 10041505 + 0 NA intron (ENSMUSG00000046159.16, intron 3 of 4) protein_coding-intron (ENSMUSG00000046159.16, intron 3 of 4) 10763 ENSMUSG00000113502.1 ENSMUSG00000113502 ENSMUST00000222830 Gm47411 TEC Interval_44755 chr13 48260617 48262706 + 0 NA exon (ENSMUSG00000021379.2, exon 1 of 3) protein_coding-exon (ENSMUSG00000021379.2, exon 1 of 3) 433 ENSMUSG00000021379.2 ENSMUSG00000021379 ENSMUST00000021810 Id4 protein_coding Interval_99213 chr2 158116152 158117110 + 0 NA promoter-TSS (ENSMUSG00000092283.1) processed_transcript-promoter-TSS (ENSMUSG00000092283.1) -523 ENSMUSG00000092283.1 ENSMUSG00000092283 ENSMUST00000173249 Gm20412 processed_transcript Interval_115928 chr4 106330406 106331493 + 0 NA intron (ENSMUSG00000028514.15, intron 1 of 67) protein_coding-intron (ENSMUSG00000028514.15, intron 1 of 67) 14736 ENSMUSG00000028514.15 ENSMUSG00000028514 ENSMUST00000150521 Usp24 protein_coding Interval_71404 chr17 23557627 23558476 + 0 NA exon (ENSMUSG00000071256.4, exon 6 of 6) protein_coding-exon (ENSMUSG00000071256.4, exon 6 of 6) -2347 ENSMUSG00000067882.14 ENSMUSG00000067882 ENSMUST00000088673 Casp16 polymorphic_pseudogene Interval_49226 chr13 109644069 109645835 + 0 NA intron (ENSMUSG00000021699.17, intron 1 of 14) protein_coding-intron (ENSMUSG00000021699.17, intron 1 of 14) -258857 ENSMUSG00000084651.1 ENSMUSG00000084651 ENSMUST00000122702 Mir1904 miRNA Interval_57909 chr15 25331779 25332915 + 0 NA intron (ENSMUSG00000115355.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000115355.1, intron 1 of 4) 301 ENSMUSG00000115355.1 ENSMUSG00000115355 ENSMUST00000228450 4930445E18Rik lincRNA Interval_123699 chr5 34589849 34591631 + 0 NA intron (ENSMUSG00000029106.14, intron 1 of 17) protein_coding-intron (ENSMUSG00000029106.14, intron 1 of 15) 15652 ENSMUSG00000107128.1 ENSMUSG00000107128 ENSMUST00000202995 Gm42867 TEC Interval_27269 chr11 65129064 65129603 + 0 NA intron (ENSMUSG00000033389.16, intron 1 of 20) protein_coding-intron (ENSMUSG00000033389.16, intron 1 of 20) 30558 ENSMUSG00000020548.10 ENSMUSG00000020548 ENSMUST00000108696 1700086D15Rik protein_coding Interval_124736 chr5 53613817 53614997 + 0 NA intron (ENSMUSG00000039191.12, intron 3 of 12) protein_coding-intron (ENSMUSG00000039191.12, intron 1 of 10) -24225 ENSMUSG00000039191.12 ENSMUSG00000039191 ENSMUST00000202092 Rbpj protein_coding Interval_112837 chr4 45426637 45427526 + 0 NA intron (ENSMUSG00000044813.15, intron 4 of 4) protein_coding-intron (ENSMUSG00000044813.15, intron 5 of 5) -18435 ENSMUSG00000045973.18 ENSMUSG00000045973 ENSMUST00000134714 Slc25a51 protein_coding Interval_136429 chr6 54388527 54389458 + 0 NA intron (ENSMUSG00000073067.10, intron 3 of 13) processed_transcript-intron (ENSMUSG00000073067.10, intron 3 of 13) -61651 ENSMUSG00000073067.10 ENSMUSG00000073067 ENSMUST00000135612 9130019P16Rik processed_transcript Interval_122735 chr5 24976288 24977882 + 0 NA intron (ENSMUSG00000028944.14, intron 3 of 15) protein_coding-intron (ENSMUSG00000028944.14, intron 3 of 15) -8757 ENSMUSG00000059631.6 ENSMUSG00000059631 ENSMUST00000075081 1500035N22Rik lincRNA Interval_735 chr1 10262821 10263193 + 0 NA Intergenic Intergenic -64205 ENSMUSG00000102556.1 ENSMUSG00000102556 ENSMUST00000192111 Gm37569 TEC Interval_87096 chr19 46075359 46076411 + 0 NA promoter-TSS (ENSMUSG00000015176.11) protein_coding-promoter-TSS (ENSMUSG00000015176.11) -104 ENSMUSG00000015176.11 ENSMUSG00000015176 ENSMUST00000224490 Nolc1 protein_coding Interval_69962 chr17 3533241 3533660 + 0 NA TTS (ENSMUSG00000091530.2) protein_coding-TTS (ENSMUSG00000091530.2) 896 ENSMUSG00000091530.2 ENSMUSG00000091530 ENSMUST00000168560 Cldn20 protein_coding Interval_109918 chr3 151565765 151566122 + 0 NA Intergenic Intergenic -42400 ENSMUSG00000065138.1 ENSMUSG00000065138 ENSMUST00000083204 Gm24458 snRNA Interval_106400 chr3 95942401 95943447 + 0 NA TTS (ENSMUSG00000106262.1) TEC-TTS (ENSMUSG00000106262.1) 2838 ENSMUSG00000106262.1 ENSMUSG00000106262 ENSMUST00000196705 Gm43375 TEC Interval_20125 chr10 115099923 115100245 + 0 NA intron (ENSMUSG00000006764.8, intron 8 of 10) protein_coding-intron (ENSMUSG00000006764.8, intron 8 of 10) 75474 ENSMUSG00000006764.8 ENSMUSG00000006764 ENSMUST00000155794 Tph2 protein_coding Interval_75833 chr17 71687179 71687882 + 0 NA intron (ENSMUSG00000045761.16, intron 1 of 18) protein_coding-intron (ENSMUSG00000045761.16, intron 2 of 19) 2725 ENSMUSG00000045761.16 ENSMUSG00000045761 ENSMUST00000129072 Togaram2 protein_coding Interval_48751 chr13 102736895 102738701 + 0 NA exon (ENSMUSG00000034751.17, exon 28 of 28) protein_coding-exon (ENSMUSG00000034751.17, exon 28 of 28) -22457 ENSMUSG00000091906.2 ENSMUSG00000091906 ENSMUST00000167834 1700099I09Rik antisense Interval_63125 chr15 99223368 99226429 + 0 NA promoter-TSS (ENSMUSG00000037579.7) protein_coding-promoter-TSS (ENSMUSG00000037579.7) -13007 ENSMUSG00000037579.7 ENSMUSG00000037579 ENSMUST00000230552 Kcnh3 protein_coding Interval_39079 chr12 84896451 84896775 + 0 NA Intergenic Intergenic 14789 ENSMUSG00000113079.1 ENSMUSG00000113079 ENSMUST00000221790 Gm48709 lincRNA Interval_90755 chr2 32311916 32312993 + 0 NA intron (ENSMUSG00000026825.17, intron 1 of 2) protein_coding-intron (ENSMUSG00000026825.17, intron 20 of 22) -5811 ENSMUSG00000092765.3 ENSMUSG00000092765 ENSMUST00000175024 Gm23363 miRNA Interval_67366 chr16 48078626 48078913 + 0 NA Intergenic Intergenic 5772 ENSMUSG00000067716.3 ENSMUSG00000067716 ENSMUST00000088296 Gm7275 processed_pseudogene Interval_58782 chr15 38048416 38048682 + 0 NA intron (ENSMUSG00000037487.7, intron 1 of 58) protein_coding-intron (ENSMUSG00000037487.7, intron 1 of 58) -9736 ENSMUSG00000065852.1 ENSMUSG00000065852 ENSMUST00000083918 Gm22353 snoRNA Interval_44435 chr13 44821324 44821613 + 0 NA intron (ENSMUSG00000038518.15, intron 2 of 4) protein_coding-intron (ENSMUSG00000038518.15, intron 2 of 18) 16815 ENSMUSG00000088189.1 ENSMUSG00000088189 ENSMUST00000157564 Gm22213 snoRNA Interval_136844 chr6 61311447 61312121 + 0 NA exon (ENSMUSG00000039578.17, exon 1 of 10) protein_coding-exon (ENSMUSG00000039578.17, exon 1 of 10) -88823 ENSMUSG00000107757.1 ENSMUSG00000107757 ENSMUST00000204456 Gm43898 processed_pseudogene Interval_160086 chr8 106288869 106289950 + 0 NA intron (ENSMUSG00000031906.9, intron 1 of 8) protein_coding-intron (ENSMUSG00000031906.9, intron 1 of 8) 6102 ENSMUSG00000074113.4 ENSMUSG00000074113 ENSMUST00000137706 Gm10629 lincRNA Interval_21943 chr11 5346699 5347139 + 0 NA intron (ENSMUSG00000041961.14, intron 1 of 3) protein_coding-intron (ENSMUSG00000041961.14, intron 1 of 8) 34821 ENSMUSG00000041961.14 ENSMUSG00000041961 ENSMUST00000143746 Znrf3 protein_coding Interval_115913 chr4 106228219 106228958 + 0 NA Intergenic Intergenic -12628 ENSMUSG00000086249.1 ENSMUSG00000086249 ENSMUST00000140196 Gm12724 processed_transcript Interval_105761 chr3 89196091 89196990 + 0 NA Intergenic Intergenic 4733 ENSMUSG00000094489.1 ENSMUSG00000094489 ENSMUST00000178701 Gm23269 snRNA Interval_57099 chr15 6339353 6340499 + 0 NA intron (ENSMUSG00000022150.16, intron 2 of 2) protein_coding-intron (ENSMUSG00000022150.16, intron 1 of 13) -10050 ENSMUSG00000115132.1 ENSMUSG00000115132 ENSMUST00000227844 Gm18888 processed_pseudogene Interval_111448 chr4 21726971 21728235 + 0 NA promoter-TSS (ENSMUSG00000028252.20) protein_coding-promoter-TSS (ENSMUSG00000028252.20) -155 ENSMUSG00000028252.20 ENSMUSG00000028252 ENSMUST00000133712 Ccnc protein_coding Interval_37570 chr12 69937630 69939532 + 0 NA intron (ENSMUSG00000021066.9, intron 6 of 13) protein_coding-intron (ENSMUSG00000021066.9, intron 7 of 14) 7677 ENSMUSG00000065327.1 ENSMUSG00000065327 ENSMUST00000083393 Gm22058 misc_RNA Interval_87700 chr19 55198215 55199286 + 0 NA exon (ENSMUSG00000055523.7, exon 21 of 21) protein_coding-exon (ENSMUSG00000055523.7, exon 21 of 21) 6072 ENSMUSG00000098289.1 ENSMUSG00000098289 ENSMUST00000184990 Mir6715 miRNA Interval_89839 chr2 25900524 25901278 + 0 NA promoter-TSS (ENSMUSG00000058740.14) protein_coding-promoter-TSS (ENSMUSG00000058740.14) 36933 ENSMUSG00000058740.14 ENSMUSG00000058740 ENSMUST00000199269 Kcnt1 protein_coding Interval_111929 chr4 32623850 32624110 + 0 NA promoter-TSS (ENSMUSG00000028282.12) protein_coding-promoter-TSS (ENSMUSG00000028282.12) 8507 ENSMUSG00000028282.12 ENSMUSG00000028282 ENSMUST00000108178 Casp8ap2 protein_coding Interval_76084 chr17 74805744 74806067 + 0 NA intron (ENSMUSG00000024078.7, intron 6 of 13) protein_coding-intron (ENSMUSG00000024078.7, intron 13 of 19) 14006 ENSMUSG00000117444.1 ENSMUSG00000117444 ENSMUST00000234963 Gm50020 antisense Interval_87958 chr19 57383787 57384004 + 0 NA intron (ENSMUSG00000033478.5, intron 11 of 14) protein_coding-intron (ENSMUSG00000033478.5, intron 13 of 16) 22865 ENSMUSG00000033478.5 ENSMUSG00000033478 ENSMUST00000237170 Fam160b1 protein_coding Interval_108986 chr3 133959471 133959714 + 0 NA intron (ENSMUSG00000097911.2, intron 2 of 2) antisense-intron (ENSMUSG00000097911.2, intron 2 of 2) -141074 ENSMUSG00000104645.1 ENSMUSG00000104645 ENSMUST00000200327 Gm30484 lincRNA Interval_24244 chr11 31754506 31754725 + 0 NA Intergenic Intergenic 55967 ENSMUSG00000103635.1 ENSMUSG00000103635 ENSMUST00000192490 Gm38061 TEC Interval_134460 chr6 28911274 28911539 + 0 NA intron (ENSMUSG00000001424.14, intron 16 of 16) protein_coding-intron (ENSMUSG00000001424.14, intron 16 of 16) -70228 ENSMUSG00000092090.2 ENSMUSG00000092090 ENSMUST00000164104 Gm3294 lincRNA Interval_13621 chr10 20230150 20230794 + 0 NA intron (ENSMUSG00000019996.17, intron 1 of 6) protein_coding-intron (ENSMUSG00000019996.17, intron 1 of 17) 21982 ENSMUSG00000111356.1 ENSMUSG00000111356 ENSMUST00000216127 Rpl32l processed_pseudogene Interval_132202 chr5 143311703 143312499 + 0 NA exon (ENSMUSG00000039244.10, exon 2 of 5) protein_coding-exon (ENSMUSG00000039244.10, exon 2 of 5) -2738 ENSMUSG00000105609.1 ENSMUSG00000105609 ENSMUST00000200220 Gm42501 TEC Interval_57034 chr15 4993014 4993447 + 0 NA intron (ENSMUSG00000079105.4, intron 16 of 17) protein_coding-intron (ENSMUSG00000079105.4, intron 16 of 17) -42130 ENSMUSG00000065714.1 ENSMUSG00000065714 ENSMUST00000083780 Gm25652 snRNA Interval_139358 chr6 99383995 99384329 + 0 NA TTS (ENSMUSG00000093559.1) sense_intronic-TTS (ENSMUSG00000093559.1) 4337 ENSMUSG00000093559.1 ENSMUSG00000093559 ENSMUST00000177278 Gm20705 sense_intronic Interval_83944 chr19 5740600 5740830 + 0 NA promoter-TSS (ENSMUSG00000024940.11) protein_coding-promoter-TSS (ENSMUSG00000024940.11) -9002 ENSMUSG00000118125.1 ENSMUSG00000118125 ENSMUST00000160852 Gm50387 protein_coding Interval_109309 chr3 138819139 138819460 + 0 NA intron (ENSMUSG00000028152.10, intron 1 of 7) protein_coding-intron (ENSMUSG00000028152.10, intron 1 of 7) 9863 ENSMUSG00000086123.3 ENSMUSG00000086123 ENSMUST00000153140 Gm16060 processed_pseudogene Interval_102442 chr3 26331106 26332127 + 0 NA promoter-TSS (ENSMUSG00000074664.3) antisense-promoter-TSS (ENSMUSG00000074664.3) -335 ENSMUSG00000074664.3 ENSMUSG00000074664 ENSMUST00000195446 A830092H15Rik antisense Interval_15846 chr10 58358346 58359599 + 0 NA intron (ENSMUSG00000019920.18, intron 1 of 9) protein_coding-intron (ENSMUSG00000019920.18, intron 1 of 9) -9368 ENSMUSG00000070214.1 ENSMUSG00000070214 ENSMUST00000093703 Gm23058 snRNA Interval_65689 chr16 25407347 25407861 + 0 NA intron (ENSMUSG00000048399.4, intron 4 of 5) protein_coding-intron (ENSMUSG00000048399.4, intron 4 of 5) 35669 ENSMUSG00000116828.1 ENSMUSG00000116828 ENSMUST00000232460 Gm18896 processed_pseudogene Interval_17921 chr10 80836875 80837924 + 0 NA intron (ENSMUSG00000051067.8, intron 1 of 1) protein_coding-intron (ENSMUSG00000051067.8, intron 1 of 1) 6399 ENSMUSG00000051067.8 ENSMUSG00000051067 ENSMUST00000219924 Lingo3 protein_coding Interval_3347 chr1 57333658 57334340 + 0 NA Intergenic Intergenic -41598 ENSMUSG00000101129.1 ENSMUSG00000101129 ENSMUST00000188353 Gm5254 processed_pseudogene Interval_34785 chr12 11187086 11187695 + 0 NA intron (ENSMUSG00000112041.1, intron 2 of 2) lincRNA-intron (ENSMUSG00000112041.1, intron 2 of 2) 16991 ENSMUSG00000112041.1 ENSMUSG00000112041 ENSMUST00000218368 9530020I12Rik lincRNA Interval_55172 chr14 78925208 78925468 + 0 NA exon (ENSMUSG00000058997.8, exon 5 of 45) protein_coding-exon (ENSMUSG00000058997.8, exon 5 of 45) 21889 ENSMUSG00000115090.1 ENSMUSG00000115090 ENSMUST00000228931 Gm49016 antisense Interval_2933 chr1 51265142 51266284 + 0 NA intron (ENSMUSG00000101799.1, intron 2 of 4) antisense-intron (ENSMUSG00000101799.1, intron 2 of 4) -23413 ENSMUSG00000045954.7 ENSMUSG00000045954 ENSMUST00000051572 Cavin2 protein_coding Interval_140434 chr6 118065080 118067212 + 0 NA promoter-TSS (ENSMUSG00000030134.11) protein_coding-promoter-TSS (ENSMUSG00000030134.11) -273 ENSMUSG00000030134.11 ENSMUSG00000030134 ENSMUST00000203482 Rasgef1a protein_coding Interval_32661 chr11 109482472 109483149 + 0 NA intron (ENSMUSG00000020604.13, intron 1 of 3) protein_coding-intron (ENSMUSG00000020604.13, intron 1 of 13) 9436 ENSMUSG00000020604.13 ENSMUSG00000020604 ENSMUST00000106696 Arsg protein_coding Interval_61710 chr15 83512425 83513127 + 0 NA Intergenic Intergenic -1983 ENSMUSG00000022442.16 ENSMUSG00000022442 ENSMUST00000154401 Ttll1 protein_coding Interval_30539 chr11 95009447 95010487 + 0 NA promoter-TSS (ENSMUSG00000047181.12) protein_coding-promoter-TSS (ENSMUSG00000047181.12) 85 ENSMUSG00000047181.12 ENSMUSG00000047181 ENSMUST00000124735 Samd14 protein_coding Interval_58048 chr15 27456224 27456857 + 0 NA Intergenic Intergenic 6909 ENSMUSG00000115138.1 ENSMUSG00000115138 ENSMUST00000227384 Gm36899 lincRNA Interval_47164 chr13 76818630 76818910 + 0 NA intron (ENSMUSG00000021596.16, intron 6 of 10) protein_coding-intron (ENSMUSG00000021596.16, intron 10 of 20) -6437 ENSMUSG00000021596.16 ENSMUSG00000021596 ENSMUST00000149028 Mctp1 protein_coding Interval_26679 chr11 59650916 59651151 + 0 NA Intergenic Intergenic 40448 ENSMUSG00000044061.7 ENSMUSG00000044061 ENSMUST00000055276 Olfr225 polymorphic_pseudogene Interval_140346 chr6 116795809 116796197 + 0 NA Intergenic Intergenic -30351 ENSMUSG00000088374.1 ENSMUSG00000088374 ENSMUST00000157749 Gm22882 snoRNA Interval_79714 chr18 34686604 34687364 + 0 NA Intergenic Intergenic 33403 ENSMUSG00000024366.8 ENSMUSG00000024366 ENSMUST00000025224 Gfra3 protein_coding Interval_125161 chr5 65002996 65003795 + 0 NA intron (ENSMUSG00000029185.14, intron 3 of 3) protein_coding-intron (ENSMUSG00000029185.14, intron 3 of 13) 30745 ENSMUSG00000106186.1 ENSMUSG00000106186 ENSMUST00000197119 Gm43627 TEC Interval_44133 chr13 41110469 41110808 + 0 NA promoter-TSS (ENSMUSG00000021362.7) protein_coding-promoter-TSS (ENSMUSG00000021362.7) -4955 ENSMUSG00000021362.7 ENSMUSG00000021362 ENSMUST00000225271 Gcm2 protein_coding Interval_169399 chr9 96957537 96957830 + 0 NA intron (ENSMUSG00000046997.5, intron 2 of 2) protein_coding-intron (ENSMUSG00000046997.5, intron 2 of 2) 26512 ENSMUSG00000046997.5 ENSMUSG00000046997 ENSMUST00000064445 Spsb4 protein_coding Interval_74960 chr17 58324587 58325171 + 0 NA intron (ENSMUSG00000038048.8, intron 18 of 23) protein_coding-intron (ENSMUSG00000038048.8, intron 18 of 23) -137446 ENSMUSG00000117281.1 ENSMUSG00000117281 ENSMUST00000233462 Gm49848 processed_pseudogene Interval_128311 chr5 112474428 112475909 + 0 NA promoter-TSS (ENSMUSG00000058153.15) protein_coding-promoter-TSS (ENSMUSG00000058153.15) 25742 ENSMUSG00000072722.2 ENSMUSG00000072722 ENSMUST00000100882 Gm6588 protein_coding Interval_151948 chr7 127712331 127713328 + 0 NA promoter-TSS (ENSMUSG00000042340.6) protein_coding-promoter-TSS (ENSMUSG00000042340.6) -108 ENSMUSG00000042340.6 ENSMUSG00000042340 ENSMUST00000205655 Ctf1 protein_coding Interval_78326 chr18 11987615 11988575 + 0 NA intron (ENSMUSG00000049411.15, intron 14 of 14) protein_coding-intron (ENSMUSG00000049411.15, intron 12 of 12) 74964 ENSMUSG00000117430.1 ENSMUSG00000117430 ENSMUST00000234828 Gm49968 TEC Interval_129553 chr5 120877485 120877686 + 0 NA intron (ENSMUSG00000066861.14, intron 5 of 6) protein_coding-intron (ENSMUSG00000066861.14, intron 5 of 6) 10028 ENSMUSG00000066861.14 ENSMUSG00000066861 ENSMUST00000161809 Oas1g protein_coding Interval_164936 chr9 43238683 43240543 + 0 NA exon (ENSMUSG00000032014.6, exon 1 of 4) protein_coding-exon (ENSMUSG00000032014.6, exon 1 of 4) -14521 ENSMUSG00000032014.6 ENSMUSG00000032014 ENSMUST00000215387 Oaf protein_coding Interval_56424 chr14 118662855 118663160 + 0 NA intron (ENSMUSG00000032849.14, intron 3 of 30) protein_coding-intron (ENSMUSG00000032849.14, intron 3 of 30) 36485 ENSMUSG00000032849.14 ENSMUSG00000032849 ENSMUST00000227480 Abcc4 protein_coding Interval_20148 chr10 115265712 115265944 + 0 NA Intergenic Intergenic -4150 ENSMUSG00000111964.1 ENSMUSG00000111964 ENSMUST00000217892 Gm8942 processed_pseudogene Interval_150759 chr7 114155285 114156081 + 0 NA Intergenic Intergenic -37919 ENSMUSG00000055723.6 ENSMUSG00000055723 ENSMUST00000210075 Rras2 protein_coding Interval_134378 chr6 27553966 27554707 + 0 NA intron (ENSMUSG00000024211.15, intron 6 of 9) protein_coding-intron (ENSMUSG00000024211.15, intron 6 of 9) -110383 ENSMUSG00000107377.1 ENSMUSG00000107377 ENSMUST00000202562 Gm42801 TEC Interval_35639 chr12 26459663 26459887 + 0 NA Intergenic Intergenic -4933 ENSMUSG00000020641.16 ENSMUSG00000020641 ENSMUST00000142732 Rsad2 protein_coding Interval_98982 chr2 156460696 156460921 + 0 NA intron (ENSMUSG00000027624.20, intron 2 of 6) protein_coding-intron (ENSMUSG00000027624.20, intron 1 of 21) -5157 ENSMUSG00000085524.1 ENSMUSG00000085524 ENSMUST00000147187 Gm14224 antisense Interval_104950 chr3 79231799 79232031 + 0 NA intron (ENSMUSG00000062232.14, intron 1 of 29) protein_coding-intron (ENSMUSG00000062232.14, intron 1 of 29) 18996 ENSMUSG00000104585.1 ENSMUSG00000104585 ENSMUST00000200412 4921511C10Rik antisense Interval_162534 chr9 4001288 4001480 + 0 NA Intergenic Intergenic -212538 ENSMUSG00000110691.1 ENSMUSG00000110691 ENSMUST00000211927 Gm5363 processed_pseudogene Interval_12004 chr1 188708214 188708922 + 0 NA intron (ENSMUSG00000026609.15, intron 37 of 70) protein_coding-intron (ENSMUSG00000026609.15, intron 37 of 70) -51908 ENSMUSG00000084550.1 ENSMUSG00000084550 ENSMUST00000122601 Gm25269 snRNA Interval_144144 chr7 19640165 19642920 + 0 NA intron (ENSMUSG00000002981.10, intron 5 of 12) protein_coding-intron (ENSMUSG00000002981.10, intron 5 of 13) -3796 ENSMUSG00000002981.10 ENSMUSG00000002981 ENSMUST00000208594 Clptm1 protein_coding Interval_154165 chr8 13179659 13180060 + 0 NA promoter-TSS (ENSMUSG00000038515.10) protein_coding-promoter-TSS (ENSMUSG00000038515.10) 6678 ENSMUSG00000031447.7 ENSMUSG00000031447 ENSMUST00000209709 Lamp1 protein_coding Interval_169771 chr9 101123287 101123970 + 0 NA TTS (ENSMUSG00000043154.15) protein_coding-TTS (ENSMUSG00000043154.15) 6927 ENSMUSG00000103672.1 ENSMUSG00000103672 ENSMUST00000194716 Gm37621 TEC Interval_14574 chr10 36181322 36182247 + 0 NA Intergenic Intergenic 85908 ENSMUSG00000110987.1 ENSMUSG00000110987 ENSMUST00000215218 Gm47048 processed_pseudogene Interval_131676 chr5 139226018 139226421 + 0 NA promoter-TSS (ENSMUSG00000036817.14) protein_coding-promoter-TSS (ENSMUSG00000036817.14) 2541 ENSMUSG00000036817.14 ENSMUSG00000036817 ENSMUST00000127310 Sun1 protein_coding Interval_155232 chr8 28441469 28441646 + 0 NA Intergenic Intergenic -79119 ENSMUSG00000110322.1 ENSMUSG00000110322 ENSMUST00000211297 Gm8110 lincRNA Interval_18495 chr10 86733455 86733809 + 0 NA exon (ENSMUSG00000044937.15, exon 7 of 16) protein_coding-exon (ENSMUSG00000044937.15, exon 7 of 16) -1244 ENSMUSG00000056366.5 ENSMUSG00000056366 ENSMUST00000070435 Fabp3-ps1 processed_pseudogene Interval_71192 chr17 21041879 21042402 + 0 NA TTS (ENSMUSG00000067942.6) protein_coding-TTS (ENSMUSG00000067942.6) 18636 ENSMUSG00000101511.1 ENSMUSG00000101511 ENSMUST00000189217 Gm5681 unprocessed_pseudogene Interval_129113 chr5 117481593 117482643 + 0 NA intron (ENSMUSG00000061578.8, intron 1 of 20) protein_coding-intron (ENSMUSG00000061578.8, intron 1 of 3) -38581 ENSMUSG00000107199.1 ENSMUSG00000107199 ENSMUST00000201553 Gm42550 TEC Interval_94908 chr2 101615456 101615689 + 0 NA intron (ENSMUSG00000027165.16, intron 1 of 1) protein_coding-intron (ENSMUSG00000027165.16, intron 1 of 6) -9174 ENSMUSG00000032864.4 ENSMUSG00000032864 ENSMUST00000111227 Rag2 protein_coding Interval_113110 chr4 48418964 48419313 + 0 NA intron (ENSMUSG00000028344.12, intron 11 of 13) protein_coding-intron (ENSMUSG00000028344.12, intron 13 of 16) 54284 ENSMUSG00000028345.15 ENSMUSG00000028345 ENSMUST00000132911 Tex10 protein_coding Interval_154193 chr8 13316525 13318244 + 0 NA promoter-TSS (ENSMUSG00000038497.7) protein_coding-promoter-TSS (ENSMUSG00000038497.7) -21437 ENSMUSG00000038482.11 ENSMUSG00000038482 ENSMUST00000209945 Tfdp1 protein_coding Interval_75446 chr17 66579124 66581213 + 0 NA intron (ENSMUSG00000024105.3, intron 2 of 3) protein_coding-intron (ENSMUSG00000024105.3, intron 2 of 3) 14453 ENSMUSG00000024105.3 ENSMUSG00000024105 ENSMUST00000024914 Themis3 protein_coding Interval_13064 chr10 10991608 10992316 + 0 NA intron (ENSMUSG00000019828.13, intron 2 of 9) protein_coding-intron (ENSMUSG00000019828.13, intron 2 of 8) -43954 ENSMUSG00000111921.1 ENSMUSG00000111921 ENSMUST00000218933 Gm48406 processed_pseudogene Interval_44817 chr13 48878111 48879178 + 0 NA TTS (ENSMUSG00000038014.7) protein_coding-TTS (ENSMUSG00000038014.7) -7525 ENSMUSG00000038025.8 ENSMUSG00000038025 ENSMUST00000035540 Phf2 protein_coding Interval_91554 chr2 43195518 43195941 + 0 NA Intergenic Intergenic 323669 ENSMUSG00000080994.2 ENSMUSG00000080994 ENSMUST00000119418 Gm13464 processed_pseudogene Interval_8444 chr1 139438540 139438724 + 0 NA intron (ENSMUSG00000033964.12, intron 6 of 8) protein_coding-intron (ENSMUSG00000033964.12, intron 6 of 10) -16140 ENSMUSG00000033952.14 ENSMUSG00000033952 ENSMUST00000196272 Aspm protein_coding Interval_43493 chr13 31863659 31863969 + 0 NA intron (ENSMUSG00000038372.14, intron 9 of 10) protein_coding-intron (ENSMUSG00000038372.14, intron 9 of 10) -20411 ENSMUSG00000083149.2 ENSMUSG00000083149 ENSMUST00000118067 Gm11380 processed_pseudogene Interval_40976 chr12 110381131 110382059 + 0 NA Intergenic Intergenic 56210 ENSMUSG00000114183.1 ENSMUSG00000114183 ENSMUST00000222991 Gm47195 processed_pseudogene Interval_65924 chr16 30280406 30281572 + 0 NA intron (ENSMUSG00000052316.9, intron 1 of 1) protein_coding-intron (ENSMUSG00000052316.9, intron 1 of 1) 2267 ENSMUSG00000052316.9 ENSMUSG00000052316 ENSMUST00000064606 Lrrc15 protein_coding Interval_71922 chr17 27017341 27019222 + 0 NA intron (ENSMUSG00000048731.15, intron 1 of 6) protein_coding-intron (ENSMUSG00000048731.15, intron 1 of 6) 10306 ENSMUSG00000057789.14 ENSMUSG00000057789 ENSMUST00000143158 Bak1 protein_coding Interval_45182 chr13 52994246 52994455 + 0 NA Intergenic Intergenic -13277 ENSMUSG00000056749.7 ENSMUSG00000056749 ENSMUST00000071065 Nfil3 protein_coding Interval_78135 chr18 9179495 9179694 + 0 NA Intergenic Intergenic -32569 ENSMUSG00000036904.6 ENSMUSG00000036904 ENSMUST00000041080 Fzd8 protein_coding Interval_116317 chr4 109688238 109688449 + 0 NA intron (ENSMUSG00000010517.7, intron 1 of 18) protein_coding-intron (ENSMUSG00000010517.7, intron 1 of 18) -21154 ENSMUSG00000028551.14 ENSMUSG00000028551 ENSMUST00000097921 Cdkn2c protein_coding Interval_104011 chr3 57267167 57268028 + 0 NA Intergenic Intergenic 4772 ENSMUSG00000104534.1 ENSMUSG00000104534 ENSMUST00000199542 Gm18660 processed_pseudogene Interval_150478 chr7 111024155 111024847 + 0 NA Intergenic Intergenic -29289 ENSMUSG00000005609.16 ENSMUSG00000005609 ENSMUST00000209912 Ctr9 protein_coding Interval_133980 chr6 17240654 17240938 + 0 NA intron (ENSMUSG00000085264.1, intron 1 of 4) antisense-intron (ENSMUSG00000085264.1, intron 1 of 4) -40563 ENSMUSG00000000058.6 ENSMUSG00000000058 ENSMUST00000115462 Cav2 protein_coding Interval_152661 chr7 135836960 135837544 + 0 NA Intergenic Intergenic -16430 ENSMUSG00000109898.1 ENSMUSG00000109898 ENSMUST00000211371 6330420H09Rik lincRNA Interval_46047 chr13 60572814 60573289 + 0 NA Intergenic Intergenic -28896 ENSMUSG00000021559.14 ENSMUSG00000021559 ENSMUST00000225952 Dapk1 protein_coding Interval_45264 chr13 53681380 53681843 + 0 NA TTS (ENSMUSG00000112965.1) lincRNA-TTS (ENSMUSG00000112965.1) 18806 ENSMUSG00000112965.1 ENSMUSG00000112965 ENSMUST00000220534 Gm34278 lincRNA Interval_29129 chr11 80490837 80491551 + 0 NA intron (ENSMUSG00000035441.14, intron 21 of 21) protein_coding-intron (ENSMUSG00000035441.14, intron 21 of 21) 14138 ENSMUSG00000048895.13 ENSMUSG00000048895 ENSMUST00000147694 Cdk5r1 protein_coding Interval_9333 chr1 156335070 156335501 + 0 NA intron (ENSMUSG00000026601.14, intron 22 of 24) protein_coding-intron (ENSMUSG00000026601.14, intron 19 of 21) 24272 ENSMUSG00000026602.9 ENSMUSG00000026602 ENSMUST00000193020 Nphs2 protein_coding Interval_104262 chr3 62352162 62353118 + 0 NA intron (ENSMUSG00000036885.14, intron 3 of 4) protein_coding-intron (ENSMUSG00000036885.14, intron 3 of 13) -12108 ENSMUSG00000103502.1 ENSMUSG00000103502 ENSMUST00000192267 9330121J05Rik antisense Interval_1249 chr1 18223512 18223736 + 0 NA promoter-TSS (ENSMUSG00000070977.4) unprocessed_pseudogene-promoter-TSS (ENSMUSG00000070977.4) -60 ENSMUSG00000070977.4 ENSMUSG00000070977 ENSMUST00000126871 Defb44-ps unprocessed_pseudogene Interval_158907 chr8 87866627 87867560 + 0 NA intron (ENSMUSG00000045333.15, intron 2 of 3) protein_coding-intron (ENSMUSG00000045333.15, intron 1 of 6) 86769 ENSMUSG00000045333.15 ENSMUSG00000045333 ENSMUST00000173092 Zfp423 protein_coding Interval_168250 chr9 78197790 78198663 + 0 NA intron (ENSMUSG00000032348.6, intron 2 of 5) protein_coding-intron (ENSMUSG00000032348.6, intron 1 of 6) 15452 ENSMUSG00000032348.6 ENSMUSG00000032348 ENSMUST00000034903 Gsta4 protein_coding Interval_48542 chr13 99970962 99972242 + 0 NA intron (ENSMUSG00000021646.9, intron 2 of 6) protein_coding-intron (ENSMUSG00000021646.9, intron 8 of 16) 3714 ENSMUSG00000021646.9 ENSMUSG00000021646 ENSMUST00000221846 Mccc2 protein_coding Interval_84559 chr19 12748027 12748298 + 0 NA Intergenic Intergenic 17470 ENSMUSG00000079415.2 ENSMUSG00000079415 ENSMUST00000112933 Cntf protein_coding Interval_3795 chr1 63117035 63117579 + 0 NA exon (ENSMUSG00000101599.1, exon 1 of 1) lincRNA-exon (ENSMUSG00000101599.1, exon 1 of 1) 189 ENSMUSG00000101599.1 ENSMUSG00000101599 ENSMUST00000185480 Gm20342 lincRNA Interval_22312 chr11 8676450 8677300 + 0 NA Intergenic Intergenic -12194 ENSMUSG00000020422.14 ENSMUSG00000020422 ENSMUST00000134823 Tns3 protein_coding Interval_82108 chr18 67790629 67790922 + 0 NA exon (ENSMUSG00000118134.1, exon 2 of 4) antisense-exon (ENSMUSG00000118134.1, exon 2 of 4) 9168 ENSMUSG00000118134.1 ENSMUSG00000118134 ENSMUST00000237968 4930549G23Rik antisense Interval_18480 chr10 86488974 86489316 + 0 NA intron (ENSMUSG00000059602.14, intron 1 of 6) protein_coding-intron (ENSMUSG00000059602.14, intron 1 of 13) 2752 ENSMUSG00000059602.14 ENSMUSG00000059602 ENSMUST00000139197 Syn3 protein_coding Interval_127505 chr5 104660725 104662712 + 0 NA Intergenic Intergenic -114061 ENSMUSG00000048334.8 ENSMUSG00000048334 ENSMUST00000055593 Gm8258 processed_pseudogene Interval_168283 chr9 78418774 78419990 + 0 NA intron (ENSMUSG00000070291.4, intron 14 of 16) protein_coding-intron (ENSMUSG00000070291.4, intron 14 of 16) -9063 ENSMUSG00000087052.1 ENSMUSG00000087052 ENSMUST00000144982 Gm8093 transcribed_processed_pseudogene Interval_33276 chr11 115666527 115668320 + 0 NA intron (ENSMUSG00000059923.13, intron 2 of 3) protein_coding-intron (ENSMUSG00000059923.13, intron 2 of 5) -9864 ENSMUSG00000084277.1 ENSMUSG00000084277 ENSMUST00000118223 Gm11702 processed_pseudogene Interval_111787 chr4 28966769 28968157 + 0 NA TTS (ENSMUSG00000028289.12) protein_coding-TTS (ENSMUSG00000028289.12) -100616 ENSMUSG00000087316.1 ENSMUSG00000087316 ENSMUST00000154813 Gm11917 lincRNA Interval_3201 chr1 54771430 54771714 + 0 NA intron (ENSMUSG00000052331.14, intron 4 of 7) protein_coding-intron (ENSMUSG00000052331.14, intron 4 of 27) 2354 ENSMUSG00000089245.1 ENSMUSG00000089245 ENSMUST00000158620 Gm24053 miRNA Interval_125339 chr5 66302240 66302993 + 0 NA exon (ENSMUSG00000029207.16, exon 18 of 18) protein_coding-exon (ENSMUSG00000029207.16, exon 18 of 18) 20401 ENSMUSG00000106818.1 ENSMUSG00000106818 ENSMUST00000202694 Gm43790 TEC Interval_109652 chr3 145740411 145740637 + 0 NA Intergenic Intergenic -1358 ENSMUSG00000105608.1 ENSMUSG00000105608 ENSMUST00000198263 Gm43408 processed_pseudogene Interval_66507 chr16 34572176 34574440 + 0 NA exon (ENSMUSG00000061751.16, exon 1 of 37) protein_coding-exon (ENSMUSG00000061751.16, exon 1 of 37) -93009 ENSMUSG00000022832.11 ENSMUSG00000022832 ENSMUST00000231612 Ropn1 protein_coding Interval_76134 chr17 75382301 75382545 + 0 NA intron (ENSMUSG00000001870.16, intron 32 of 34) protein_coding-intron (ENSMUSG00000001870.16, intron 31 of 33) -53473 ENSMUSG00000071042.12 ENSMUSG00000071042 ENSMUST00000234011 Rasgrp3 protein_coding Interval_836 chr1 12314315 12314525 + 0 NA Intergenic Intergenic -60516 ENSMUSG00000093864.1 ENSMUSG00000093864 ENSMUST00000179834 Gm22633 snRNA Interval_159739 chr8 99724628 99724945 + 0 NA intron (ENSMUSG00000052479.5, intron 4 of 4) lincRNA-intron (ENSMUSG00000052479.5, intron 4 of 4) 60767 ENSMUSG00000083586.2 ENSMUSG00000083586 ENSMUST00000118240 Gm8688 unprocessed_pseudogene Interval_37529 chr12 69594817 69595998 + 0 NA exon (ENSMUSG00000034801.13, exon 1 of 1) protein_coding-exon (ENSMUSG00000034801.13, exon 1 of 1) -9149 ENSMUSG00000065919.1 ENSMUSG00000065919 ENSMUST00000083985 Gm24449 snRNA Interval_32792 chr11 110682822 110683235 + 0 NA Intergenic Intergenic 138521 ENSMUSG00000085985.1 ENSMUSG00000085985 ENSMUST00000144689 Gm11682 lincRNA Interval_55684 chr14 99031228 99031807 + 0 NA Intergenic Intergenic 14617 ENSMUSG00000033186.9 ENSMUSG00000033186 ENSMUST00000227197 Mzt1 protein_coding Interval_11628 chr1 183440365 183440577 + 0 NA Intergenic Intergenic 19816 ENSMUSG00000104022.1 ENSMUSG00000104022 ENSMUST00000192860 Gm37214 sense_intronic Interval_60583 chr15 75441234 75441779 + 0 NA Intergenic Intergenic -7951 ENSMUSG00000093626.1 ENSMUSG00000093626 ENSMUST00000177479 Ly6l protein_coding Interval_52097 chr14 35860444 35860668 + 0 NA Intergenic Intergenic 39947 ENSMUSG00000115375.1 ENSMUSG00000115375 ENSMUST00000227206 Gm49039 processed_pseudogene Interval_99323 chr2 159012742 159013378 + 0 NA Intergenic Intergenic -56803 ENSMUSG00000104628.1 ENSMUSG00000104628 ENSMUST00000196974 Gm44319 miRNA Interval_110755 chr4 8093478 8094368 + 0 NA Intergenic Intergenic -24697 ENSMUSG00000083068.1 ENSMUSG00000083068 ENSMUST00000120050 Gm11800 processed_pseudogene Interval_135279 chr6 37997793 37999700 + 0 NA intron (ENSMUSG00000029830.15, intron 9 of 10) protein_coding-intron (ENSMUSG00000029830.15, intron 14 of 15) 19865 ENSMUSG00000029830.15 ENSMUSG00000029830 ENSMUST00000040486 Svopl protein_coding Interval_155753 chr8 36831449 36832321 + 0 NA intron (ENSMUSG00000031523.16, intron 4 of 17) protein_coding-intron (ENSMUSG00000031523.16, intron 4 of 17) 120551 ENSMUSG00000031523.16 ENSMUSG00000031523 ENSMUST00000179501 Dlc1 protein_coding Interval_55627 chr14 96517713 96519348 + 0 NA exon (ENSMUSG00000022076.10, exon 1 of 11) protein_coding-exon (ENSMUSG00000022076.10, exon 1 of 11) 572 ENSMUSG00000022076.10 ENSMUSG00000022076 ENSMUST00000022666 Klhl1 protein_coding Interval_69743 chr16 95977716 95979089 + 0 NA Intergenic Intergenic 12488 ENSMUSG00000022913.16 ENSMUSG00000022913 ENSMUST00000233134 Psmg1 protein_coding Interval_37186 chr12 59261322 59261745 + 0 NA Intergenic Intergenic -1140 ENSMUSG00000112385.1 ENSMUSG00000112385 ENSMUST00000217964 Gm48258 processed_pseudogene Interval_125640 chr5 72972632 72973382 + 0 NA intron (ENSMUSG00000063656.6, intron 1 of 1) protein_coding-intron (ENSMUSG00000063656.6, intron 1 of 1) 1695 ENSMUSG00000063656.6 ENSMUSG00000063656 ENSMUST00000043711 Gm10135 protein_coding Interval_104002 chr3 56981917 56982235 + 0 NA Intergenic Intergenic -72074 ENSMUSG00000077190.1 ENSMUSG00000077190 ENSMUST00000104002 Gm22269 snoRNA Interval_10167 chr1 166300549 166300995 + 0 NA intron (ENSMUSG00000040612.13, intron 6 of 8) protein_coding-intron (ENSMUSG00000040612.13, intron 6 of 9) 8813 ENSMUSG00000091393.1 ENSMUSG00000091393 ENSMUST00000168347 5330438I03Rik antisense Interval_116551 chr4 115523736 115524012 + 0 NA intron (ENSMUSG00000066072.13, intron 4 of 12) protein_coding-intron (ENSMUSG00000066072.13, intron 4 of 12) 5586 ENSMUSG00000066072.13 ENSMUSG00000066072 ENSMUST00000094886 Cyp4a10 protein_coding Interval_156614 chr8 54705944 54706146 + 0 NA intron (ENSMUSG00000039375.16, intron 1 of 4) protein_coding-intron (ENSMUSG00000039375.16, intron 1 of 6) -2990 ENSMUSG00000089719.1 ENSMUSG00000089719 ENSMUST00000162822 Gm15758 processed_transcript Interval_138642 chr6 90663226 90664044 + 0 NA intron (ENSMUSG00000034312.15, intron 1 of 1) protein_coding-intron (ENSMUSG00000034312.15, intron 13 of 13) 17885 ENSMUSG00000093052.2 ENSMUSG00000093052 ENSMUST00000175311 Gm24816 miRNA Interval_700 chr1 10008729 10009693 + 0 NA promoter-TSS (ENSMUSG00000025916.10) protein_coding-promoter-TSS (ENSMUSG00000025916.10) -81 ENSMUSG00000025916.10 ENSMUSG00000025916 ENSMUST00000155163 Ppp1r42 protein_coding Interval_54934 chr14 76335601 76336922 + 0 NA Intergenic Intergenic -82567 ENSMUSG00000022010.19 ENSMUSG00000022010 ENSMUST00000133224 Tsc22d1 protein_coding Interval_159722 chr8 99394255 99394871 + 0 NA intron (ENSMUSG00000036510.17, intron 2 of 12) protein_coding-intron (ENSMUSG00000036510.17, intron 2 of 12) 21864 ENSMUSG00000036510.17 ENSMUSG00000036510 ENSMUST00000142475 Cdh8 protein_coding Interval_64413 chr16 11216481 11217481 + 0 NA intron (ENSMUSG00000097537.2, intron 2 of 2) antisense-intron (ENSMUSG00000097537.2, intron 1 of 1) 13286 ENSMUSG00000097537.2 ENSMUSG00000097537 ENSMUST00000230245 2610020C07Rik antisense Interval_96702 chr2 127282662 127282857 + 0 NA intron (ENSMUSG00000027367.16, intron 2 of 3) protein_coding-intron (ENSMUSG00000027367.16, intron 1 of 2) -9352 ENSMUSG00000027367.16 ENSMUSG00000027367 ENSMUST00000154549 Stard7 protein_coding Interval_4401 chr1 73926421 73926912 + 0 NA intron (ENSMUSG00000055322.16, intron 23 of 32) protein_coding-intron (ENSMUSG00000055322.16, intron 25 of 34) -71091 ENSMUSG00000098504.1 ENSMUSG00000098504 ENSMUST00000183826 Mir6351 miRNA Interval_103311 chr3 38463008 38463285 + 0 NA intron (ENSMUSG00000044864.16, intron 1 of 3) protein_coding-intron (ENSMUSG00000044864.16, intron 2 of 3) -19514 ENSMUSG00000105516.4 ENSMUSG00000105516 ENSMUST00000196546 Gm36823 lincRNA Interval_8702 chr1 149127148 149127435 + 0 NA TTS (ENSMUSG00000102074.1) lincRNA-TTS (ENSMUSG00000102074.1) 21176 ENSMUSG00000102074.1 ENSMUSG00000102074 ENSMUST00000191166 Gm29020 lincRNA Interval_70323 chr17 8487422 8488448 + 0 NA Intergenic Intergenic 52524 ENSMUSG00000062327.10 ENSMUSG00000062327 ENSMUST00000177118 T protein_coding Interval_4166 chr1 71074752 71074949 + 0 NA exon (ENSMUSG00000026196.7, exon 4 of 11) protein_coding-exon (ENSMUSG00000026196.7, exon 4 of 11) 28296 ENSMUSG00000026196.7 ENSMUSG00000026196 ENSMUST00000027393 Bard1 protein_coding Interval_19904 chr10 111107346 111109419 + 0 NA Intergenic Intergenic -5511 ENSMUSG00000112165.1 ENSMUSG00000112165 ENSMUST00000218334 Gm48851 processed_pseudogene Interval_86316 chr19 38652645 38653582 + 0 NA intron (ENSMUSG00000024998.17, intron 4 of 32) protein_coding-intron (ENSMUSG00000024998.17, intron 3 of 31) 51211 ENSMUSG00000117935.1 ENSMUSG00000117935 ENSMUST00000237606 Gm8717 processed_pseudogene Interval_32686 chr11 109650161 109651966 + 0 NA exon (ENSMUSG00000020612.16, exon 1 of 11) protein_coding-exon (ENSMUSG00000020612.16, exon 1 of 11) -14881 ENSMUSG00000020612.16 ENSMUSG00000020612 ENSMUST00000155532 Prkar1a protein_coding Interval_119630 chr4 138856583 138857265 + 0 NA intron (ENSMUSG00000041193.15, intron 1 of 5) protein_coding-intron (ENSMUSG00000041193.15, intron 1 of 5) 17040 ENSMUSG00000078518.1 ENSMUSG00000078518 ENSMUST00000105805 Gm13030 protein_coding Interval_17540 chr10 77605482 77607593 + 0 NA promoter-TSS (ENSMUSG00000020265.16) protein_coding-promoter-TSS (ENSMUSG00000020265.16) 340 ENSMUSG00000112241.1 ENSMUSG00000112241 ENSMUST00000174113 Gm49325 protein_coding Interval_163000 chr9 14379027 14379295 + 0 NA TTS (ENSMUSG00000037419.9) protein_coding-TTS (ENSMUSG00000037419.9) 1822 ENSMUSG00000037419.9 ENSMUSG00000037419 ENSMUST00000214236 Endod1 protein_coding Interval_32276 chr11 106657541 106658415 + 0 NA intron (ENSMUSG00000020717.19, intron 13 of 13) protein_coding-intron (ENSMUSG00000020717.19, intron 14 of 14) 5348 ENSMUSG00000020717.19 ENSMUSG00000020717 ENSMUST00000124958 Pecam1 protein_coding Interval_118408 chr4 131234354 131234666 + 0 NA Intergenic Intergenic -4767 ENSMUSG00000088041.1 ENSMUSG00000088041 ENSMUST00000157416 Gm25261 snoRNA Interval_30719 chr11 96111104 96112263 + 0 NA intron (ENSMUSG00000006056.13, intron 1 of 6) protein_coding-intron (ENSMUSG00000006056.13, intron 1 of 5) 279 ENSMUSG00000006056.13 ENSMUSG00000006056 ENSMUST00000097162 Calcoco2 protein_coding Interval_163147 chr9 15746019 15746226 + 0 NA Intergenic Intergenic 19234 ENSMUSG00000043885.14 ENSMUSG00000043885 ENSMUST00000214954 Slc36a4 protein_coding Interval_91608 chr2 44554614 44555023 + 0 NA Intergenic Intergenic 125883 ENSMUSG00000088124.1 ENSMUSG00000088124 ENSMUST00000157499 Gm22867 snRNA Interval_42347 chr13 12264160 12264675 + 0 NA Intergenic Intergenic -4147 ENSMUSG00000113036.1 ENSMUSG00000113036 ENSMUST00000221517 Gm47021 processed_pseudogene Interval_124835 chr5 56012979 56013416 + 0 NA Intergenic Intergenic -144141 ENSMUSG00000105685.1 ENSMUSG00000105685 ENSMUST00000198120 Gm43315 processed_pseudogene Interval_131255 chr5 136028174 136028637 + 0 NA exon (ENSMUSG00000004947.15, exon 2 of 6) protein_coding-exon (ENSMUSG00000004947.15, exon 2 of 6) -10091 ENSMUSG00000042985.7 ENSMUSG00000042985 ENSMUST00000062606 Upk3b protein_coding Interval_98027 chr2 146899216 146899420 + 0 NA intron (ENSMUSG00000074749.10, intron 6 of 13) protein_coding-intron (ENSMUSG00000074749.10, intron 6 of 13) 43409 ENSMUSG00000074749.10 ENSMUSG00000074749 ENSMUST00000135595 Kiz protein_coding Interval_67980 chr16 62561808 62562828 + 0 NA Intergenic Intergenic -8718 ENSMUSG00000070173.1 ENSMUSG00000070173 ENSMUST00000093663 Gm24164 snRNA Interval_124450 chr5 48018860 48019407 + 0 NA intron (ENSMUSG00000031558.15, intron 3 of 8) protein_coding-intron (ENSMUSG00000031558.15, intron 4 of 35) 13349 ENSMUSG00000092559.1 ENSMUSG00000092559 ENSMUST00000174884 Gm20475 sense_intronic Interval_94830 chr2 95643410 95644254 + 0 NA Intergenic Intergenic -33885 ENSMUSG00000081757.1 ENSMUSG00000081757 ENSMUST00000118285 Gm13798 processed_pseudogene Interval_56831 chr14 122324050 122324601 + 0 NA intron (ENSMUSG00000025545.10, intron 2 of 7) protein_coding-intron (ENSMUSG00000025545.10, intron 2 of 7) 63835 ENSMUSG00000095311.1 ENSMUSG00000095311 ENSMUST00000175481 Gm25464 snRNA Interval_99843 chr2 165263541 165264525 + 0 NA Intergenic Intergenic 6143 ENSMUSG00000087800.1 ENSMUSG00000087800 ENSMUST00000157175 Gm25569 snoRNA Interval_40100 chr12 101167339 101167700 + 0 NA Intergenic Intergenic 18412 ENSMUSG00000092054.3 ENSMUSG00000092054 ENSMUST00000185083 Kif4-ps transcribed_processed_pseudogene Interval_81662 chr18 62976038 62976629 + 0 NA Intergenic Intergenic -1514 ENSMUSG00000024581.13 ENSMUSG00000024581 ENSMUST00000236914 Napg protein_coding Interval_147807 chr7 73664466 73664939 + 0 NA Intergenic Intergenic 2654 ENSMUSG00000089391.1 ENSMUSG00000089391 ENSMUST00000158766 Gm23020 misc_RNA Interval_140517 chr6 119193981 119194766 + 0 NA intron (ENSMUSG00000041477.14, intron 1 of 5) protein_coding-intron (ENSMUSG00000041477.14, intron 3 of 8) 2017 ENSMUSG00000041477.14 ENSMUSG00000041477 ENSMUST00000127059 Dcp1b protein_coding Interval_132113 chr5 142814440 142815399 + 0 NA intron (ENSMUSG00000039477.16, intron 2 of 2) protein_coding-intron (ENSMUSG00000039477.16, intron 2 of 15) 38280 ENSMUSG00000082308.1 ENSMUSG00000082308 ENSMUST00000117498 Gm15770 processed_pseudogene Interval_52669 chr14 48451927 48452231 + 0 NA promoter-TSS (ENSMUSG00000036339.18) protein_coding-promoter-TSS (ENSMUSG00000036339.18) -20243 ENSMUSG00000036339.18 ENSMUSG00000036339 ENSMUST00000226344 Tmem260 protein_coding Interval_43998 chr13 38917608 38918094 + 0 NA exon (ENSMUSG00000114949.1, exon 1 of 1) TEC-exon (ENSMUSG00000114949.1, exon 1 of 1) 1368 ENSMUSG00000114949.1 ENSMUSG00000114949 ENSMUST00000223588 Gm47530 TEC Interval_108561 chr3 128971524 128971732 + 0 NA Intergenic Intergenic -16530 ENSMUSG00000074236.3 ENSMUSG00000074236 ENSMUST00000098624 Gm9387 processed_pseudogene Interval_139496 chr6 100543167 100543505 + 0 NA Intergenic Intergenic 15936 ENSMUSG00000101553.1 ENSMUSG00000101553 ENSMUST00000187986 1700049E22Rik lincRNA Interval_164356 chr9 35706163 35706464 + 0 NA Intergenic Intergenic -18923 ENSMUSG00000091215.3 ENSMUSG00000091215 ENSMUST00000183567 Pate1 protein_coding Interval_36999 chr12 56174175 56174589 + 0 NA Intergenic Intergenic -15032 ENSMUSG00000112650.1 ENSMUSG00000112650 ENSMUST00000220417 Gm5184 processed_pseudogene Interval_74173 chr17 46900480 46901648 + 0 NA Intergenic Intergenic -9414 ENSMUSG00000023978.5 ENSMUSG00000023978 ENSMUST00000162469 Prph2 protein_coding Interval_102017 chr3 15045842 15046821 + 0 NA Intergenic Intergenic -71779 ENSMUSG00000098186.1 ENSMUSG00000098186 ENSMUST00000182302 Gm7132 processed_pseudogene Interval_61834 chr15 84509794 84510476 + 0 NA Intergenic Intergenic 47688 ENSMUSG00000055745.4 ENSMUSG00000055745 ENSMUST00000069476 Rtl6 protein_coding Interval_89483 chr2 20936370 20937429 + 0 NA intron (ENSMUSG00000036591.16, intron 2 of 25) protein_coding-intron (ENSMUSG00000036591.16, intron 2 of 25) -5510 ENSMUSG00000085206.1 ENSMUSG00000085206 ENSMUST00000124322 Gm13380 sense_intronic Interval_119292 chr4 136690593 136690825 + 0 NA intron (ENSMUSG00000028664.14, intron 1 of 5) protein_coding-intron (ENSMUSG00000028664.14, intron 5 of 15) 3331 ENSMUSG00000028664.14 ENSMUSG00000028664 ENSMUST00000144573 Ephb2 protein_coding Interval_1895 chr1 34394355 34396604 + 0 NA Intergenic Intergenic 22507 ENSMUSG00000101462.2 ENSMUSG00000101462 ENSMUST00000188254 Gm3052 transcribed_processed_pseudogene Interval_36183 chr12 38139383 38139682 + 0 NA intron (ENSMUSG00000036095.11, intron 10 of 22) protein_coding-intron (ENSMUSG00000036095.11, intron 10 of 24) 49630 ENSMUSG00000113941.1 ENSMUSG00000113941 ENSMUST00000222392 Gm35755 processed_pseudogene Interval_145186 chr7 30518158 30518964 + 0 NA intron (ENSMUSG00000062132.10, intron 2 of 11) protein_coding-intron (ENSMUSG00000062132.10, intron 2 of 11) 2862 ENSMUSG00000062132.10 ENSMUSG00000062132 ENSMUST00000238768 Arhgap33os protein_coding Interval_62860 chr15 97465440 97465991 + 0 NA Intergenic Intergenic 92575 ENSMUSG00000116131.1 ENSMUSG00000116131 ENSMUST00000230522 Gm49506 processed_pseudogene Interval_74950 chr17 57798411 57799001 + 0 NA intron (ENSMUSG00000038048.8, intron 1 of 23) protein_coding-intron (ENSMUSG00000038048.8, intron 1 of 23) 29136 ENSMUSG00000038048.8 ENSMUSG00000038048 ENSMUST00000076038 Cntnap5c protein_coding Interval_86655 chr19 42332466 42332966 + 0 NA intron (ENSMUSG00000042401.8, intron 3 of 14) protein_coding-intron (ENSMUSG00000042401.8, intron 3 of 14) 46385 ENSMUSG00000117706.1 ENSMUSG00000117706 ENSMUST00000237236 Gm50184 processed_pseudogene Interval_1851 chr1 34132986 34134467 + 0 NA intron (ENSMUSG00000026131.20, intron 1 of 4) protein_coding-intron (ENSMUSG00000026131.20, intron 5 of 97) 16367 ENSMUSG00000105982.1 ENSMUSG00000105982 ENSMUST00000198033 Mir6896 miRNA Interval_128803 chr5 115358781 115360398 + 0 NA intron (ENSMUSG00000087292.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000086352.1, intron 1 of 1) 492 ENSMUSG00000087292.1 ENSMUSG00000087292 ENSMUST00000151159 Gm13832 lincRNA Interval_5731 chr1 91319418 91319807 + 0 NA intron (ENSMUSG00000026307.12, intron 11 of 11) protein_coding-intron (ENSMUSG00000026307.12, intron 11 of 11) 1489 ENSMUSG00000090322.1 ENSMUSG00000090322 ENSMUST00000171768 Gm17090 antisense Interval_160936 chr8 115486571 115487479 + 0 NA Intergenic Intergenic -98367 ENSMUSG00000110592.1 ENSMUSG00000110592 ENSMUST00000212830 4930488N15Rik lincRNA Interval_139417 chr6 99984840 99985582 + 0 NA intron (ENSMUSG00000108151.1, intron 1 of 3) lincRNA-intron (ENSMUSG00000108151.1, intron 1 of 3) 6004 ENSMUSG00000108151.1 ENSMUSG00000108151 ENSMUST00000204791 Gm33201 lincRNA Interval_104473 chr3 66187278 66187635 + 0 NA intron (ENSMUSG00000027831.9, intron 6 of 13) protein_coding-intron (ENSMUSG00000027831.9, intron 6 of 13) 3789 ENSMUSG00000103208.1 ENSMUSG00000103208 ENSMUST00000192606 Gm37330 processed_pseudogene Interval_97870 chr2 144599745 144600651 + 0 NA intron (ENSMUSG00000027430.12, intron 1 of 5) protein_coding-intron (ENSMUSG00000027430.12, intron 1 of 5) 6144 ENSMUSG00000074754.4 ENSMUSG00000074754 ENSMUST00000136628 Smim26 protein_coding Interval_86053 chr19 36027493 36027823 + 0 NA intron (ENSMUSG00000024798.15, intron 2 of 4) protein_coding-intron (ENSMUSG00000024798.15, intron 1 of 3) 29849 ENSMUSG00000024798.15 ENSMUSG00000024798 ENSMUST00000099505 Htr7 protein_coding Interval_29948 chr11 87977450 87979139 + 0 NA Intergenic Intergenic 5718 ENSMUSG00000020483.14 ENSMUSG00000020483 ENSMUST00000146941 Dynll2 protein_coding Interval_116277 chr4 109236678 109237110 + 0 NA intron (ENSMUSG00000028558.14, intron 2 of 8) protein_coding-intron (ENSMUSG00000028558.14, intron 1 of 7) -7688 ENSMUSG00000028558.14 ENSMUSG00000028558 ENSMUST00000141555 Calr4 protein_coding Interval_33873 chr11 119111190 119111823 + 0 NA promoter-TSS (ENSMUSG00000086306.1) lincRNA-promoter-TSS (ENSMUSG00000086306.1) -81 ENSMUSG00000086306.1 ENSMUSG00000086306 ENSMUST00000156576 Gm11754 lincRNA Interval_2579 chr1 40797061 40797642 + 0 NA Intergenic Intergenic -6694 ENSMUSG00000041945.12 ENSMUSG00000041945 ENSMUST00000144385 Mfsd9 protein_coding Interval_111609 chr4 24544650 24545297 + 0 NA intron (ENSMUSG00000045751.16, intron 13 of 16) protein_coding-intron (ENSMUSG00000045751.16, intron 12 of 22) 48522 ENSMUSG00000045751.16 ENSMUSG00000045751 ENSMUST00000123984 Mms22l protein_coding Interval_55575 chr14 93082324 93083489 + 0 NA intron (ENSMUSG00000055421.8, intron 4 of 4) protein_coding-intron (ENSMUSG00000055421.8, intron 3 of 3) 55283 ENSMUSG00000065014.1 ENSMUSG00000065014 ENSMUST00000083080 Gm23509 snRNA Interval_5231 chr1 86598432 86599262 + 0 NA intron (ENSMUSG00000026240.12, intron 1 of 2) protein_coding-intron (ENSMUSG00000026240.12, intron 4 of 6) 15909 ENSMUSG00000026240.12 ENSMUSG00000026240 ENSMUST00000127219 Cops7b protein_coding Interval_157938 chr8 76787951 76788151 + 0 NA intron (ENSMUSG00000074235.4, intron 1 of 1) bidirectional_promoter_lncRNA-intron (ENSMUSG00000074235.4, intron 1 of 1) 74997 ENSMUSG00000087321.1 ENSMUSG00000087321 ENSMUST00000139800 Gm5353 processed_pseudogene Interval_4006 chr1 66223356 66223625 + 0 NA intron (ENSMUSG00000015222.18, intron 2 of 3) protein_coding-intron (ENSMUSG00000015222.18, intron 2 of 13) -82399 ENSMUSG00000088850.1 ENSMUSG00000088850 ENSMUST00000158225 Gm24729 snoRNA Interval_73917 chr17 45473828 45475342 + 0 NA intron (ENSMUSG00000023935.10, intron 1 of 6) protein_coding-intron (ENSMUSG00000023935.10, intron 1 of 7) 279 ENSMUSG00000023935.10 ENSMUSG00000023935 ENSMUST00000233583 Spats1 protein_coding Interval_138723 chr6 91451819 91452857 + 0 NA Intergenic Intergenic -5472 ENSMUSG00000108810.1 ENSMUSG00000108810 ENSMUST00000206951 Gm44629 processed_pseudogene Interval_160432 chr8 109462183 109464790 + 0 NA Intergenic Intergenic -31558 ENSMUSG00000031727.8 ENSMUSG00000031727 ENSMUST00000212003 Pmfbp1 protein_coding Interval_92733 chr2 64755724 64755989 + 0 NA Intergenic Intergenic 112732 ENSMUSG00000084104.1 ENSMUSG00000084104 ENSMUST00000120849 Gm13578 processed_pseudogene Interval_86234 chr19 37999332 38000286 + 0 NA intron (ENSMUSG00000048612.16, intron 3 of 9) protein_coding-intron (ENSMUSG00000048612.16, intron 3 of 52) 43590 ENSMUSG00000048612.16 ENSMUSG00000048612 ENSMUST00000226084 Myof protein_coding Interval_22991 chr11 18549446 18549618 + 0 NA Intergenic Intergenic 28947 ENSMUSG00000081101.1 ENSMUSG00000081101 ENSMUST00000118819 Gm12024 processed_pseudogene Interval_101512 chr3 3347616 3347860 + 0 NA Intergenic Intergenic -80711 ENSMUSG00000103028.1 ENSMUSG00000103028 ENSMUST00000195392 Gm8747 processed_pseudogene Interval_492 chr1 6382458 6383377 + 0 NA exon (ENSMUSG00000102706.1, exon 1 of 1) processed_pseudogene-exon (ENSMUSG00000102706.1, exon 1 of 1) 189 ENSMUSG00000102706.1 ENSMUSG00000102706 ENSMUST00000192950 Gm7417 processed_pseudogene Interval_6430 chr1 108327478 108328940 + 0 NA Intergenic Intergenic 51229 ENSMUSG00000100041.1 ENSMUSG00000100041 ENSMUST00000185629 Gm5702 processed_pseudogene Interval_69087 chr16 90534152 90534429 + 0 NA Intergenic Intergenic 16319 ENSMUSG00000116753.1 ENSMUSG00000116753 ENSMUST00000232652 Gm36001 lincRNA Interval_20521 chr10 118395573 118396044 + 0 NA Intergenic Intergenic -41703 ENSMUSG00000112919.1 ENSMUSG00000112919 ENSMUST00000178998 Gm9049 protein_coding Interval_24209 chr11 31504164 31504663 + 0 NA Intergenic Intergenic -134366 ENSMUSG00000020303.2 ENSMUSG00000020303 ENSMUST00000134199 Stc2 protein_coding Interval_170731 chr9 110385873 110386461 + 0 NA promoter-TSS (ENSMUSG00000036057.11) protein_coding-promoter-TSS (ENSMUSG00000036057.11) 80 ENSMUSG00000036057.11 ENSMUSG00000036057 ENSMUST00000199254 Ptpn23 protein_coding Interval_121584 chr5 3625552 3625794 + 0 NA promoter-TSS (ENSMUSG00000105130.1) antisense-promoter-TSS (ENSMUSG00000105130.1) -310 ENSMUSG00000105130.1 ENSMUSG00000105130 ENSMUST00000199650 Gm43825 antisense Interval_3611 chr1 59993240 59993892 + 0 NA intron (ENSMUSG00000026018.12, intron 10 of 10) protein_coding-intron (ENSMUSG00000026018.12, intron 10 of 10) 14385 ENSMUSG00000041040.12 ENSMUSG00000041040 ENSMUST00000189790 Fam117b protein_coding Interval_76130 chr17 75355454 75355689 + 0 NA intron (ENSMUSG00000001870.16, intron 27 of 34) protein_coding-intron (ENSMUSG00000001870.16, intron 26 of 33) -80325 ENSMUSG00000071042.12 ENSMUSG00000071042 ENSMUST00000234011 Rasgrp3 protein_coding Interval_58845 chr15 38559337 38559624 + 0 NA intron (ENSMUSG00000102106.2, intron 2 of 2) lincRNA-intron (ENSMUSG00000102106.2, intron 2 of 2) -14516 ENSMUSG00000115587.1 ENSMUSG00000115587 ENSMUST00000226494 Gm29697 processed_pseudogene Interval_109153 chr3 136895307 136895926 + 0 NA intron (ENSMUSG00000028161.17, intron 8 of 12) protein_coding-intron (ENSMUSG00000028161.17, intron 8 of 13) 7667 ENSMUSG00000028161.17 ENSMUSG00000028161 ENSMUST00000130114 Ppp3ca protein_coding Interval_28497 chr11 76352840 76353731 + 0 NA intron (ENSMUSG00000020844.6, intron 1 of 7) protein_coding-intron (ENSMUSG00000020844.6, intron 1 of 7) 45783 ENSMUSG00000020844.6 ENSMUSG00000020844 ENSMUST00000131472 Nxn protein_coding Interval_117497 chr4 124178006 124179591 + 0 NA Intergenic Intergenic 100379 ENSMUSG00000103541.1 ENSMUSG00000103541 ENSMUST00000193103 Gm37667 TEC Interval_148560 chr7 82677026 82677251 + 0 NA promoter-TSS (ENSMUSG00000108855.1) processed_pseudogene-promoter-TSS (ENSMUSG00000108855.1) -408 ENSMUSG00000108855.1 ENSMUSG00000108855 ENSMUST00000208798 Gm44917 processed_pseudogene Interval_129858 chr5 122775096 122776140 + 0 NA intron (ENSMUSG00000029471.13, intron 1 of 2) protein_coding-intron (ENSMUSG00000029471.13, intron 1 of 16) 3715 ENSMUSG00000029471.13 ENSMUSG00000029471 ENSMUST00000199599 Camkk2 protein_coding Interval_30 GL456211.1 163254 163725 + 0 NA NA NA NA NA Interval_109945 chr3 152099959 152100925 + 0 NA intron (ENSMUSG00000039131.15, intron 5 of 5) protein_coding-intron (ENSMUSG00000039131.15, intron 5 of 5) -5997 ENSMUSG00000105698.1 ENSMUSG00000105698 ENSMUST00000198961 Gm31881 antisense Interval_87500 chr19 53073647 53073955 + 0 NA intron (ENSMUSG00000099988.7, intron 1 of 2) processed_transcript-intron (ENSMUSG00000099988.7, intron 1 of 2) -2442 ENSMUSG00000099988.7 ENSMUSG00000099988 ENSMUST00000236249 1700054A03Rik processed_transcript Interval_26948 chr11 61770946 61771419 + 0 NA Intergenic Intergenic -9094 ENSMUSG00000020528.14 ENSMUSG00000020528 ENSMUST00000123575 Prpsap2 protein_coding Interval_78106 chr18 8193678 8194884 + 0 NA Intergenic Intergenic 13702 ENSMUSG00000117490.1 ENSMUSG00000117490 ENSMUST00000234300 Gm35031 lincRNA Interval_87057 chr19 45846843 45847224 + 0 NA intron (ENSMUSG00000039901.10, intron 23 of 25) protein_coding-intron (ENSMUSG00000039901.10, intron 23 of 25) 3416 ENSMUSG00000117956.1 ENSMUSG00000117956 ENSMUST00000235344 Gm50196 antisense Interval_136688 chr6 57782603 57782895 + 0 NA intron (ENSMUSG00000037788.14, intron 1 of 2) protein_coding-intron (ENSMUSG00000037788.14, intron 2 of 4) 42401 ENSMUSG00000037788.14 ENSMUSG00000037788 ENSMUST00000143953 Vopp1 protein_coding Interval_137238 chr6 70615899 70616210 + 0 NA Intergenic Intergenic 8617 ENSMUSG00000076598.3 ENSMUSG00000076598 ENSMUST00000103399 Igkv3-7 IG_V_gene Interval_117811 chr4 126357554 126357846 + 0 NA intron (ENSMUSG00000028842.15, intron 12 of 18) protein_coding-intron (ENSMUSG00000028842.15, intron 12 of 18) -32070 ENSMUSG00000028845.15 ENSMUSG00000028845 ENSMUST00000141990 Tekt2 protein_coding Interval_169818 chr9 102147210 102149037 + 0 NA intron (ENSMUSG00000032537.15, intron 3 of 4) protein_coding-intron (ENSMUSG00000032537.15, intron 3 of 15) 5594 ENSMUSG00000101648.1 ENSMUSG00000101648 ENSMUST00000190718 Gm29388 sense_intronic Interval_77994 chr18 6500610 6501798 + 0 NA intron (ENSMUSG00000024240.13, intron 1 of 13) protein_coding-intron (ENSMUSG00000024240.13, intron 1 of 13) -10558 ENSMUSG00000084514.1 ENSMUSG00000084514 ENSMUST00000122565 Mir1893 miRNA Interval_85235 chr19 24086710 24087328 + 0 NA Intergenic Intergenic 22226 ENSMUSG00000096796.1 ENSMUSG00000096796 ENSMUST00000178667 1700021P04Rik lincRNA Interval_75326 chr17 65873969 65874406 + 0 NA intron (ENSMUSG00000024096.17, intron 1 of 9) protein_coding-intron (ENSMUSG00000024096.17, intron 1 of 9) 10216 ENSMUSG00000024096.17 ENSMUSG00000024096 ENSMUST00000233784 Ralbp1 protein_coding Interval_155139 chr8 26981842 26982220 + 0 NA TTS (ENSMUSG00000085795.8) protein_coding-TTS (ENSMUSG00000085795.8) -2030 ENSMUSG00000109954.1 ENSMUSG00000109954 ENSMUST00000210723 Gm45371 antisense Interval_5061 chr1 84742195 84742848 + 0 NA intron (ENSMUSG00000026219.14, intron 6 of 17) protein_coding-intron (ENSMUSG00000026219.14, intron 29 of 40) -13645 ENSMUSG00000026219.14 ENSMUSG00000026219 ENSMUST00000187818 Trip12 protein_coding Interval_107970 chr3 117965070 117965508 + 0 NA Intergenic Intergenic -3841 ENSMUSG00000104703.1 ENSMUSG00000104703 ENSMUST00000197578 4921521D15Rik lincRNA Interval_25873 chr11 52282306 52284459 + 0 NA promoter-TSS (ENSMUSG00000000782.16) protein_coding-promoter-TSS (ENSMUSG00000000782.16) 7327 ENSMUSG00000086395.1 ENSMUSG00000086395 ENSMUST00000150973 A630014C17Rik antisense Interval_151653 chr7 125706869 125708301 + 0 NA promoter-TSS (ENSMUSG00000032743.15) protein_coding-promoter-TSS (ENSMUSG00000032743.15) -332 ENSMUSG00000032743.15 ENSMUSG00000032743 ENSMUST00000155059 D430042O09Rik protein_coding Interval_165330 chr9 46337702 46338965 + 0 NA intron (ENSMUSG00000110864.1, intron 1 of 4) lincRNA-intron (ENSMUSG00000110864.1, intron 1 of 4) -4442 ENSMUSG00000110864.1 ENSMUSG00000110864 ENSMUST00000214913 Gm31374 lincRNA Interval_52061 chr14 34964311 34964529 + 0 NA intron (ENSMUSG00000041078.7, intron 3 of 15) protein_coding-intron (ENSMUSG00000041078.7, intron 3 of 15) 69811 ENSMUSG00000065481.1 ENSMUSG00000065481 ENSMUST00000083547 Mir346 miRNA Interval_22318 chr11 8723038 8723943 + 0 NA Intergenic Intergenic -58809 ENSMUSG00000020422.14 ENSMUSG00000020422 ENSMUST00000134823 Tns3 protein_coding Interval_45883 chr13 58777921 58779193 + 0 NA intron (ENSMUSG00000114231.1, intron 3 of 3) lincRNA-intron (ENSMUSG00000114231.1, intron 3 of 3) 16172 ENSMUSG00000114808.1 ENSMUSG00000114808 ENSMUST00000224161 Gm47947 lincRNA Interval_90202 chr2 28997528 28997727 + 0 NA intron (ENSMUSG00000079502.8, intron 1 of 6) protein_coding-intron (ENSMUSG00000079502.8, intron 1 of 5) 41733 ENSMUSG00000079502.8 ENSMUSG00000079502 ENSMUST00000113843 Cfap77 protein_coding Interval_61370 chr15 81163532 81164010 + 0 NA intron (ENSMUSG00000042292.18, intron 1 of 14) protein_coding-intron (ENSMUSG00000042292.18, intron 1 of 3) -27082 ENSMUSG00000047938.7 ENSMUSG00000047938 ENSMUST00000138715 4930483J18Rik processed_transcript Interval_101162 chr2 178664484 178665648 + 0 NA Intergenic Intergenic 204436 ENSMUSG00000039155.15 ENSMUSG00000039155 ENSMUST00000176869 Cdh26 protein_coding Interval_26266 chr11 55518549 55519425 + 0 NA intron (ENSMUSG00000000263.15, intron 8 of 8) protein_coding-intron (ENSMUSG00000000263.15, intron 8 of 8) 4141 ENSMUSG00000086460.1 ENSMUSG00000086460 ENSMUST00000152968 Gm12236 antisense Interval_102650 chr3 28876040 28876383 + 0 NA Intergenic Intergenic -3601 ENSMUSG00000102482.1 ENSMUSG00000102482 ENSMUST00000195470 Gm37924 TEC Interval_124095 chr5 38235067 38237044 + 0 NA Intergenic Intergenic 15527 ENSMUSG00000067367.9 ENSMUSG00000067367 ENSMUST00000131492 Lyar protein_coding Interval_160166 chr8 106887728 106888342 + 0 NA intron (ENSMUSG00000046691.14, intron 1 of 3) protein_coding-intron (ENSMUSG00000117748.1, intron 1 of 1) 5556 ENSMUSG00000117748.1 ENSMUSG00000117748 ENSMUST00000176437 Gm50241 protein_coding Interval_150284 chr7 109276399 109277627 + 0 NA Intergenic Intergenic -52813 ENSMUSG00000109001.1 ENSMUSG00000109001 ENSMUST00000208274 Gm45024 lincRNA Interval_24829 chr11 40038834 40039057 + 0 NA intron (ENSMUSG00000085301.1, intron 2 of 7) lincRNA-intron (ENSMUSG00000085301.1, intron 2 of 7) 30751 ENSMUSG00000085301.1 ENSMUSG00000085301 ENSMUST00000130945 Gm12132 lincRNA Interval_51604 chr14 30637043 30638081 + 0 NA intron (ENSMUSG00000114553.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000114553.1, intron 1 of 2) 1402 ENSMUSG00000114553.1 ENSMUSG00000114553 ENSMUST00000225011 Gm7644 lincRNA Interval_88151 chr19 59838204 59838550 + 0 NA Intergenic Intergenic 62685 ENSMUSG00000090965.1 ENSMUSG00000090965 ENSMUST00000164379 Gm17203 lincRNA Interval_2834 chr1 46116865 46118129 + 0 NA intron (ENSMUSG00000041144.12, intron 9 of 64) protein_coding-intron (ENSMUSG00000041144.12, intron 10 of 65) 50644 ENSMUSG00000041144.12 ENSMUSG00000041144 ENSMUST00000185879 Dnah7b protein_coding Interval_68249 chr16 71114268 71114892 + 0 NA Intergenic Intergenic -16496 ENSMUSG00000116750.1 ENSMUSG00000116750 ENSMUST00000231591 4931420L22Rik lincRNA Interval_174466 chrX 152829061 152830030 + 0 NA Intergenic Intergenic -39075 ENSMUSG00000088383.1 ENSMUSG00000088383 ENSMUST00000157758 Gm24687 ribozyme Interval_170556 chr9 108669376 108670370 + 0 NA intron (ENSMUSG00000032602.6, intron 2 of 8) protein_coding-intron (ENSMUSG00000032602.6, intron 2 of 8) -2623 ENSMUSG00000032602.6 ENSMUSG00000032602 ENSMUST00000195260 Slc25a20 protein_coding Interval_30316 chr11 93550977 93551353 + 0 NA intron (ENSMUSG00000056158.14, intron 4 of 8) protein_coding-intron (ENSMUSG00000056158.14, intron 5 of 9) -99594 ENSMUSG00000082453.1 ENSMUSG00000082453 ENSMUST00000120917 Gm11502 processed_pseudogene Interval_18795 chr10 90880144 90881519 + 0 NA intron (ENSMUSG00000058589.14, intron 1 of 2) protein_coding-intron (ENSMUSG00000058589.14, intron 3 of 11) 29732 ENSMUSG00000112601.1 ENSMUSG00000112601 ENSMUST00000218261 Gm47590 TEC Interval_69549 chr16 94169038 94170957 + 0 NA promoter-TSS (ENSMUSG00000076304.1) miRNA-promoter-TSS (ENSMUSG00000076304.1) -338 ENSMUSG00000115325.2 ENSMUSG00000115325 ENSMUST00000226729 Gm48979 processed_pseudogene Interval_168848 chr9 88019090 88019327 + 0 NA Intergenic Intergenic 2341 ENSMUSG00000077553.1 ENSMUSG00000077553 ENSMUST00000104365 Gm23176 snoRNA Interval_86531 chr19 41491674 41491870 + 0 NA intron (ENSMUSG00000025019.17, intron 2 of 7) protein_coding-intron (ENSMUSG00000025019.17, intron 2 of 7) 31959 ENSMUSG00000044065.3 ENSMUSG00000044065 ENSMUST00000057038 Gm9788 processed_pseudogene Interval_146288 chr7 45144496 45144982 + 0 NA promoter-TSS (ENSMUSG00000007833.15) protein_coding-promoter-TSS (ENSMUSG00000007833.15) -8508 ENSMUSG00000089989.10 ENSMUSG00000089989 ENSMUST00000209467 Gm45713 protein_coding Interval_8289 chr1 136951247 136954413 + 0 NA intron (ENSMUSG00000026398.14, intron 1 of 8) protein_coding-intron (ENSMUSG00000026398.14, intron 1 of 8) -3657 ENSMUSG00000026398.14 ENSMUSG00000026398 ENSMUST00000195428 Nr5a2 protein_coding Interval_13607 chr10 20166771 20167489 + 0 NA intron (ENSMUSG00000019996.17, intron 1 of 6) protein_coding-intron (ENSMUSG00000019996.17, intron 1 of 17) -3858 ENSMUSG00000019996.17 ENSMUSG00000019996 ENSMUST00000216308 Map7 protein_coding Interval_14899 chr10 40936142 40937899 + 0 NA intron (ENSMUSG00000019831.14, intron 8 of 8) protein_coding-intron (ENSMUSG00000019831.14, intron 8 of 8) 53193 ENSMUSG00000019831.14 ENSMUSG00000019831 ENSMUST00000105509 Wasf1 protein_coding Interval_132026 chr5 142367051 142367990 + 0 NA Intergenic Intergenic -33977 ENSMUSG00000056493.9 ENSMUSG00000056493 ENSMUST00000072837 Foxk1 protein_coding Interval_26636 chr11 59375200 59376001 + 0 NA promoter-TSS (ENSMUSG00000049291.6) protein_coding-promoter-TSS (ENSMUSG00000049291.6) 57 ENSMUSG00000049291.6 ENSMUSG00000049291 ENSMUST00000061481 Prss38 protein_coding Interval_120661 chr4 149959838 149960550 + 0 NA Intergenic Intergenic -37723 ENSMUSG00000039911.13 ENSMUSG00000039911 ENSMUST00000135896 Spsb1 protein_coding Interval_101473 chr2 181635190 181636845 + 0 NA intron (ENSMUSG00000002455.14, intron 9 of 11) protein_coding-intron (ENSMUSG00000002455.14, intron 9 of 20) -21017 ENSMUSG00000108976.1 ENSMUSG00000108976 ENSMUST00000207856 Gm29797 protein_coding Interval_34213 chr11 121317777 121318612 + 0 NA Intergenic Intergenic 22994 ENSMUSG00000025173.13 ENSMUSG00000025173 ENSMUST00000127373 Wdr45b protein_coding Interval_15590 chr10 52003695 52003898 + 0 NA Intergenic Intergenic -14217 ENSMUSG00000112557.1 ENSMUSG00000112557 ENSMUST00000219916 Gm47626 processed_pseudogene Interval_50381 chr14 12299026 12300433 + 0 NA promoter-TSS (ENSMUSG00000033111.16) protein_coding-promoter-TSS (ENSMUSG00000033111.16) 15486 ENSMUSG00000033111.16 ENSMUSG00000033111 ENSMUST00000225052 3830406C13Rik protein_coding Interval_151880 chr7 127278104 127279107 + 0 NA Intergenic Intergenic -4550 ENSMUSG00000049091.6 ENSMUSG00000049091 ENSMUST00000082428 Sephs2 protein_coding Interval_126804 chr5 93051056 93051283 + 0 NA Intergenic Intergenic -6147 ENSMUSG00000045314.5 ENSMUSG00000045314 ENSMUST00000061328 Sowahb protein_coding Interval_99157 chr2 157565547 157566033 + 0 NA exon (ENSMUSG00000067787.10, exon 2 of 2) protein_coding-exon (ENSMUSG00000067787.10, exon 2 of 2) -3343 ENSMUSG00000077990.1 ENSMUSG00000077990 ENSMUST00000104797 Gm23134 miRNA Interval_63993 chr16 5101025 5101741 + 0 NA exon (ENSMUSG00000039457.4, exon 12 of 22) protein_coding-exon (ENSMUSG00000039457.4, exon 12 of 22) 31027 ENSMUSG00000039457.4 ENSMUSG00000039457 ENSMUST00000230554 Ppl protein_coding Interval_15221 chr10 43455969 43456864 + 0 NA promoter-TSS (ENSMUSG00000094955.2) processed_pseudogene-promoter-TSS (ENSMUSG00000094955.2) 85 ENSMUSG00000094955.2 ENSMUSG00000094955 ENSMUST00000178135 Gm3699 processed_pseudogene Interval_119055 chr4 135248628 135248933 + 0 NA intron (ENSMUSG00000037242.8, intron 1 of 2) protein_coding-intron (ENSMUSG00000037242.8, intron 1 of 5) 24034 ENSMUSG00000037242.8 ENSMUSG00000037242 ENSMUST00000143370 Clic4 protein_coding Interval_126897 chr5 96857308 96857513 + 0 NA Intergenic Intergenic 7905 ENSMUSG00000104955.1 ENSMUSG00000104955 ENSMUST00000198159 1700016F12Rik lincRNA Interval_2768 chr1 44551292 44552694 + 0 NA promoter-TSS (ENSMUSG00000056870.9) protein_coding-promoter-TSS (ENSMUSG00000056870.9) -8892 ENSMUSG00000102319.1 ENSMUSG00000102319 ENSMUST00000194332 Gm37626 TEC Interval_160070 chr8 106179107 106179626 + 0 NA exon (ENSMUSG00000031904.5, exon 2 of 10) protein_coding-exon (ENSMUSG00000031904.5, exon 2 of 10) 10491 ENSMUSG00000031904.5 ENSMUSG00000031904 ENSMUST00000212802 Slc7a6 protein_coding Interval_158482 chr8 83983331 83983620 + 0 NA intron (ENSMUSG00000005469.10, intron 3 of 9) protein_coding-intron (ENSMUSG00000005469.10, intron 3 of 9) 6592 ENSMUSG00000005469.10 ENSMUSG00000005469 ENSMUST00000211558 Prkaca protein_coding Interval_126502 chr5 89221463 89222115 + 0 NA intron (ENSMUSG00000060961.16, intron 21 of 25) protein_coding-intron (ENSMUSG00000060961.16, intron 20 of 24) 213839 ENSMUSG00000035540.12 ENSMUSG00000035540 ENSMUST00000200534 Gc protein_coding Interval_155461 chr8 33731526 33732658 + 0 NA promoter-TSS (ENSMUSG00000049476.12) lincRNA-promoter-TSS (ENSMUSG00000049476.12) -219 ENSMUSG00000031585.13 ENSMUSG00000031585 ENSMUST00000186200 Gtf2e2 protein_coding Interval_127377 chr5 103587016 103588616 + 0 NA intron (ENSMUSG00000034573.14, intron 42 of 47) protein_coding-intron (ENSMUSG00000034573.14, intron 42 of 47) -14771 ENSMUSG00000088474.1 ENSMUSG00000088474 ENSMUST00000157849 Gm23085 misc_RNA Interval_103754 chr3 52365941 52366379 + 0 NA Intergenic Intergenic -59248 ENSMUSG00000103454.1 ENSMUSG00000103454 ENSMUST00000194115 Gm38098 processed_pseudogene Interval_119188 chr4 136089007 136090379 + 0 NA Intergenic Intergenic -14721 ENSMUSG00000082877.1 ENSMUSG00000082877 ENSMUST00000121307 Gm13009 processed_pseudogene Interval_101995 chr3 14620846 14622023 + 0 NA Intergenic Intergenic 7806 ENSMUSG00000104249.1 ENSMUSG00000104249 ENSMUST00000195085 Gm38151 processed_pseudogene Interval_97460 chr2 136778874 136779134 + 0 NA intron (ENSMUSG00000027273.13, intron 7 of 7) protein_coding-intron (ENSMUSG00000027273.13, intron 7 of 7) -34389 ENSMUSG00000082849.1 ENSMUSG00000082849 ENSMUST00000121662 Gm14053 processed_pseudogene Interval_6646 chr1 118497939 118499085 + 0 NA TTS (ENSMUSG00000064302.13) protein_coding-TTS (ENSMUSG00000064302.13) -14205 ENSMUSG00000064302.13 ENSMUSG00000064302 ENSMUST00000187575 Clasp1 protein_coding Interval_151574 chr7 123989120 123990307 + 0 NA intron (ENSMUSG00000078591.1, intron 1 of 1) protein_coding-intron (ENSMUSG00000078591.1, intron 1 of 1) -6259 ENSMUSG00000098129.1 ENSMUSG00000098129 ENSMUST00000181984 Gm27040 antisense Interval_79388 chr18 31562659 31563076 + 0 NA intron (ENSMUSG00000024259.9, intron 7 of 9) protein_coding-intron (ENSMUSG00000024259.9, intron 7 of 9) -42105 ENSMUSG00000117576.1 ENSMUSG00000117576 ENSMUST00000234311 Gm5241 processed_pseudogene Interval_171757 chr9 120753650 120756176 + 0 NA TTS (ENSMUSG00000110726.1) processed_pseudogene-TTS (ENSMUSG00000110726.1) 613 ENSMUSG00000110726.1 ENSMUSG00000110726 ENSMUST00000215769 Gm18101 processed_pseudogene Interval_159506 chr8 95141925 95144169 + 0 NA promoter-TSS (ENSMUSG00000031788.14) protein_coding-promoter-TSS (ENSMUSG00000031788.14) 4737 ENSMUSG00000110475.1 ENSMUSG00000110475 ENSMUST00000212925 Gm31036 antisense Interval_104169 chr3 59496709 59497249 + 0 NA Intergenic Intergenic 13955 ENSMUSG00000104038.1 ENSMUSG00000104038 ENSMUST00000193121 Gm37771 unprocessed_pseudogene Interval_171168 chr9 114921055 114921913 + 0 NA intron (ENSMUSG00000050627.13, intron 1 of 7) protein_coding-intron (ENSMUSG00000050627.13, intron 1 of 6) 12503 ENSMUSG00000050627.13 ENSMUSG00000050627 ENSMUST00000146266 Gpd1l protein_coding Interval_79274 chr18 29470653 29471222 + 0 NA intron (ENSMUSG00000117618.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000117618.1, intron 1 of 2) 25479 ENSMUSG00000117618.1 ENSMUSG00000117618 ENSMUST00000234290 4930578E11Rik lincRNA Interval_38513 chr12 79765367 79765584 + 0 NA intron (ENSMUSG00000059060.15, intron 8 of 10) protein_coding-intron (ENSMUSG00000059060.15, intron 8 of 10) 160019 ENSMUSG00000112765.1 ENSMUSG00000112765 ENSMUST00000219857 9430078K24Rik lincRNA Interval_129203 chr5 118168956 118170212 + 0 NA promoter-TSS (ENSMUSG00000046607.6) protein_coding-promoter-TSS (ENSMUSG00000046607.6) 4936 ENSMUSG00000046607.6 ENSMUSG00000046607 ENSMUST00000054836 Hrk protein_coding Interval_125657 chr5 73088988 73089439 + 0 NA promoter-TSS (ENSMUSG00000070733.13) protein_coding-promoter-TSS (ENSMUSG00000070733.13) -44059 ENSMUSG00000107171.1 ENSMUSG00000107171 ENSMUST00000202292 Gm42572 TEC Interval_163589 chr9 22372682 22373460 + 0 NA promoter-TSS (ENSMUSG00000036777.8) protein_coding-promoter-TSS (ENSMUSG00000036777.8) -1292 ENSMUSG00000111069.1 ENSMUSG00000111069 ENSMUST00000214468 Gm48646 sense_intronic Interval_132893 chr5 148565489 148566205 + 0 NA Intergenic Intergenic -11986 ENSMUSG00000106899.1 ENSMUSG00000106899 ENSMUST00000202969 1700013A02Rik TEC Interval_96900 chr2 129286600 129287399 + 0 NA intron (ENSMUSG00000048327.6, intron 3 of 8) protein_coding-intron (ENSMUSG00000048327.6, intron 3 of 8) 10213 ENSMUSG00000048327.6 ENSMUSG00000048327 ENSMUST00000052708 Ckap2l protein_coding Interval_20413 chr10 117406751 117406952 + 0 NA Intergenic Intergenic 7053 ENSMUSG00000112796.1 ENSMUSG00000112796 ENSMUST00000220040 Gm40770 lincRNA Interval_28624 chr11 77347622 77348878 + 0 NA promoter-TSS (ENSMUSG00000037926.15) protein_coding-promoter-TSS (ENSMUSG00000037926.15) -32 ENSMUSG00000037926.15 ENSMUSG00000037926 ENSMUST00000180545 Ssh2 protein_coding Interval_63211 chr15 99758909 99759737 + 0 NA intron (ENSMUSG00000023021.15, intron 1 of 7) protein_coding-intron (ENSMUSG00000023021.15, intron 1 of 9) -6668 ENSMUSG00000090406.1 ENSMUSG00000090406 ENSMUST00000168951 Gm17058 antisense Interval_54124 chr14 65525937 65526470 + 0 NA Intergenic Intergenic 66849 ENSMUSG00000022031.6 ENSMUSG00000022031 ENSMUST00000224743 Elp3 protein_coding Interval_62682 chr15 96243880 96245323 + 0 NA intron (ENSMUSG00000097619.8, intron 2 of 2) lincRNA-intron (ENSMUSG00000097536.2, intron 1 of 6) 9386 ENSMUSG00000097619.8 ENSMUSG00000097619 ENSMUST00000229950 4833422M21Rik processed_transcript Interval_90157 chr2 28616459 28617145 + 0 NA intron (ENSMUSG00000026815.14, intron 1 of 6) protein_coding-intron (ENSMUSG00000026815.14, intron 1 of 6) 5180 ENSMUSG00000026815.14 ENSMUSG00000026815 ENSMUST00000145690 Gfi1b protein_coding Interval_52371 chr14 45453307 45454167 + 0 NA Intergenic Intergenic 7908 ENSMUSG00000088769.1 ENSMUSG00000088769 ENSMUST00000158144 Gm22637 misc_RNA Interval_19504 chr10 100681191 100681821 + 0 NA Intergenic Intergenic 29876 ENSMUSG00000112328.1 ENSMUSG00000112328 ENSMUST00000219685 Gm47325 processed_pseudogene Interval_167813 chr9 72836900 72837982 + 0 NA intron (ENSMUSG00000036030.9, intron 2 of 19) protein_coding-intron (ENSMUSG00000036030.9, intron 2 of 19) -9878 ENSMUSG00000098471.1 ENSMUSG00000098471 ENSMUST00000183677 Gm27203 processed_pseudogene Interval_5411 chr1 88602309 88602629 + 0 NA Intergenic Intergenic -50616 ENSMUSG00000104057.1 ENSMUSG00000104057 ENSMUST00000194311 Gm38130 TEC Interval_86811 chr19 44009153 44009372 + 0 NA intron (ENSMUSG00000025197.9, intron 7 of 7) protein_coding-intron (ENSMUSG00000025197.9, intron 7 of 8) 19946 ENSMUSG00000025197.9 ENSMUSG00000025197 ENSMUST00000211830 Cyp2c23 protein_coding Interval_139389 chr6 99734318 99734842 + 0 NA Intergenic Intergenic -8188 ENSMUSG00000030069.15 ENSMUSG00000030069 ENSMUST00000203738 Prok2 protein_coding Interval_124208 chr5 40952674 40953279 + 0 NA Intergenic Intergenic -328260 ENSMUSG00000106865.1 ENSMUSG00000106865 ENSMUST00000200907 4930519E07Rik TEC Interval_107720 chr3 111893447 111893689 + 0 NA intron (ENSMUSG00000104543.1, intron 1 of 3) lincRNA-intron (ENSMUSG00000104543.1, intron 1 of 3) 11665 ENSMUSG00000104543.1 ENSMUSG00000104543 ENSMUST00000198910 Gm6602 lincRNA Interval_150732 chr7 113913032 113913632 + 0 NA intron (ENSMUSG00000038156.16, intron 5 of 5) protein_coding-intron (ENSMUSG00000038156.16, intron 5 of 15) 147158 ENSMUSG00000038156.16 ENSMUSG00000038156 ENSMUST00000084696 Spon1 protein_coding Interval_82360 chr18 72608652 72609683 + 0 NA Intergenic Intergenic 115900 ENSMUSG00000117984.1 ENSMUSG00000117984 ENSMUST00000235469 Gm31819 lincRNA Interval_59373 chr15 51968496 51968863 + 0 NA intron (ENSMUSG00000022314.10, intron 9 of 13) protein_coding-intron (ENSMUSG00000022314.10, intron 9 of 13) 22831 ENSMUSG00000022314.10 ENSMUSG00000022314 ENSMUST00000226529 Rad21 protein_coding Interval_100298 chr2 168250201 168250707 + 0 NA Intergenic Intergenic -8024 ENSMUSG00000083342.1 ENSMUSG00000083342 ENSMUST00000122080 Gm14237 processed_pseudogene Interval_162039 chr8 124647963 124648930 + 0 NA intron (ENSMUSG00000031983.7, intron 2 of 3) protein_coding-intron (ENSMUSG00000031983.7, intron 2 of 3) 14923 ENSMUSG00000031983.7 ENSMUSG00000031983 ENSMUST00000034464 2310022B05Rik protein_coding Interval_41829 chr13 3051065 3051292 + 0 NA Intergenic Intergenic -30977 ENSMUSG00000113763.1 ENSMUSG00000113763 ENSMUST00000223224 Gm49287 transcribed_unprocessed_pseudogene Interval_94510 chr2 91763658 91764345 + 0 NA intron (ENSMUSG00000040506.16, intron 1 of 8) protein_coding-intron (ENSMUSG00000040506.16, intron 1 of 17) 33819 ENSMUSG00000040506.16 ENSMUSG00000040506 ENSMUST00000142224 Ambra1 protein_coding Interval_12408 chr1 193152707 193154149 + 0 NA intron (ENSMUSG00000026638.15, intron 1 of 4) protein_coding-intron (ENSMUSG00000026638.15, intron 1 of 7) -15075 ENSMUSG00000026638.15 ENSMUSG00000026638 ENSMUST00000193772 Irf6 protein_coding Interval_167722 chr9 72285449 72286189 + 0 NA exon (ENSMUSG00000038535.17, exon 3 of 3) protein_coding-exon (ENSMUSG00000038535.17, exon 3 of 3) -3848 ENSMUSG00000098492.1 ENSMUSG00000098492 ENSMUST00000184561 Gm19353 processed_pseudogene Interval_13294 chr10 14287473 14288363 + 0 NA Intergenic Intergenic -9045 ENSMUSG00000112679.1 ENSMUSG00000112679 ENSMUST00000219975 Gm40603 lincRNA Interval_126366 chr5 87311243 87311592 + 0 NA intron (ENSMUSG00000105897.2, intron 1 of 8) unprocessed_pseudogene-intron (ENSMUSG00000105897.2, intron 1 of 8) 400 ENSMUSG00000105897.2 ENSMUSG00000105897 ENSMUST00000198590 Gm7646 unprocessed_pseudogene Interval_68924 chr16 88927137 88927497 + 0 NA Intergenic Intergenic -3098 ENSMUSG00000048643.5 ENSMUSG00000048643 ENSMUST00000062005 Krtap19-9a processed_pseudogene Interval_125192 chr5 65250070 65251064 + 0 NA intron (ENSMUSG00000037890.13, intron 29 of 35) protein_coding-intron (ENSMUSG00000037890.13, intron 29 of 36) 23100 ENSMUSG00000029191.16 ENSMUSG00000029191 ENSMUST00000203644 Rfc1 protein_coding Interval_79072 chr18 24326336 24327464 + 0 NA Intergenic Intergenic -12466 ENSMUSG00000117570.1 ENSMUSG00000117570 ENSMUST00000234938 Gm38410 lincRNA Interval_50598 chr14 16342837 16343484 + 0 NA intron (ENSMUSG00000114243.1, intron 1 of 1) antisense-intron (ENSMUSG00000114243.1, intron 1 of 1) 23108 ENSMUSG00000114243.1 ENSMUSG00000114243 ENSMUST00000225819 Gm48163 antisense Interval_49148 chr13 108556947 108557230 + 0 NA intron (ENSMUSG00000021699.17, intron 2 of 4) protein_coding-intron (ENSMUSG00000021699.17, intron 1 of 3) -58118 ENSMUSG00000099323.1 ENSMUSG00000099323 ENSMUST00000184594 Gm28016 misc_RNA Interval_70522 chr17 11513679 11514753 + 0 NA intron (ENSMUSG00000023826.16, intron 5 of 10) protein_coding-intron (ENSMUSG00000023826.16, intron 6 of 6) 31582 ENSMUSG00000099618.1 ENSMUSG00000099618 ENSMUST00000185957 Gm28118 processed_pseudogene Interval_57689 chr15 15564113 15564556 + 0 NA Intergenic Intergenic -215660 ENSMUSG00000115266.1 ENSMUSG00000115266 ENSMUST00000226912 4930557F08Rik lincRNA Interval_78855 chr18 20992404 20993124 + 0 NA Intergenic Intergenic -9331 ENSMUSG00000024317.15 ENSMUSG00000024317 ENSMUST00000234169 Rnf138 protein_coding Interval_127048 chr5 99934681 99935027 + 0 NA intron (ENSMUSG00000105078.2, intron 4 of 5) protein_coding-intron (ENSMUSG00000105078.2, intron 4 of 5) -6473 ENSMUSG00000089062.1 ENSMUSG00000089062 ENSMUST00000158437 Gm22838 snRNA Interval_62310 chr15 89670807 89671244 + 0 NA Intergenic Intergenic 65492 ENSMUSG00000116149.1 ENSMUSG00000116149 ENSMUST00000229546 Gm18476 processed_pseudogene Interval_61944 chr15 85388070 85389537 + 0 NA intron (ENSMUSG00000016541.10, intron 7 of 11) protein_coding-intron (ENSMUSG00000016541.10, intron 7 of 11) -37549 ENSMUSG00000064764.1 ENSMUSG00000064764 ENSMUST00000082830 Gm23517 snRNA Interval_150412 chr7 110242422 110243204 + 0 NA intron (ENSMUSG00000031015.8, intron 1 of 4) protein_coding-intron (ENSMUSG00000031015.8, intron 1 of 11) 21081 ENSMUSG00000031015.8 ENSMUSG00000031015 ENSMUST00000210513 Swap70 protein_coding Interval_29513 chr11 84570064 84571100 + 0 NA Intergenic Intergenic 44922 ENSMUSG00000087211.7 ENSMUSG00000087211 ENSMUST00000128121 Lhx1os lincRNA Interval_12606 chr10 3866341 3866551 + 0 NA intron (ENSMUSG00000040624.18, intron 1 of 15) protein_coding-intron (ENSMUSG00000040624.18, intron 2 of 16) 3161 ENSMUSG00000082123.1 ENSMUSG00000082123 ENSMUST00000117631 Gm16149 processed_pseudogene Interval_119684 chr4 139205878 139206276 + 0 NA intron (ENSMUSG00000028745.18, intron 1 of 3) protein_coding-intron (ENSMUSG00000028745.18, intron 1 of 8) 11966 ENSMUSG00000028745.18 ENSMUSG00000028745 ENSMUST00000132385 Capzb protein_coding Interval_47457 chr13 84605315 84606246 + 0 NA Intergenic Intergenic 85161 ENSMUSG00000098081.1 ENSMUSG00000098081 ENSMUST00000182391 Gm26913 processed_pseudogene Interval_26073 chr11 53931240 53932205 + 0 NA Intergenic Intergenic -2246 ENSMUSG00000081098.1 ENSMUSG00000081098 ENSMUST00000118476 Gm12220 unprocessed_pseudogene Interval_70286 chr17 8210401 8210989 + 0 NA Intergenic Intergenic -34363 ENSMUSG00000040899.14 ENSMUSG00000040899 ENSMUST00000231545 Ccr6 protein_coding Interval_137233 chr6 70551199 70552181 + 0 NA Intergenic Intergenic -1549 ENSMUSG00000105499.1 ENSMUSG00000105499 ENSMUST00000197500 Igkv3-11 IG_V_pseudogene Interval_153240 chr7 142720453 142720952 + 0 NA intron (ENSMUSG00000000215.11, intron 2 of 4) protein_coding-intron (ENSMUSG00000000215.11, intron 2 of 4) 22679 ENSMUSG00000000215.11 ENSMUSG00000000215 ENSMUST00000162317 Ins2 protein_coding Interval_99118 chr2 157315953 157316408 + 0 NA promoter-TSS (ENSMUSG00000027642.15) protein_coding-promoter-TSS (ENSMUSG00000027642.15) 31326 ENSMUSG00000027643.9 ENSMUSG00000027643 ENSMUST00000126630 Ghrh protein_coding Interval_141214 chr6 125642183 125643036 + 0 NA exon (ENSMUSG00000001930.17, exon 28 of 52) protein_coding-exon (ENSMUSG00000001930.17, exon 28 of 52) -68017 ENSMUSG00000038115.16 ENSMUSG00000038115 ENSMUST00000159984 Ano2 protein_coding Interval_153236 chr7 142678869 142679835 + 0 NA exon (ENSMUSG00000000215.11, exon 2 of 3) protein_coding-exon (ENSMUSG00000000215.11, exon 2 of 3) -9410 ENSMUSG00000115302.1 ENSMUSG00000115302 ENSMUST00000228850 Gm49394 protein_coding Interval_62521 chr15 94202312 94203159 + 0 NA Intergenic Intergenic 201523 ENSMUSG00000022449.14 ENSMUSG00000022449 ENSMUST00000128797 Adamts20 protein_coding Interval_96617 chr2 126559012 126560031 + 0 NA intron (ENSMUSG00000027359.16, intron 1 of 9) protein_coding-intron (ENSMUSG00000027359.16, intron 1 of 9) -5239 ENSMUSG00000027359.16 ENSMUSG00000027359 ENSMUST00000150947 Slc27a2 protein_coding Interval_15583 chr10 51816699 51816955 + 0 NA Intergenic Intergenic -29886 ENSMUSG00000112337.1 ENSMUSG00000112337 ENSMUST00000217696 Gm47614 lincRNA Interval_88140 chr19 59513220 59513442 + 0 NA intron (ENSMUSG00000100119.1, intron 2 of 4) lincRNA-intron (ENSMUSG00000100119.1, intron 2 of 4) 20195 ENSMUSG00000100119.1 ENSMUSG00000100119 ENSMUST00000190204 2700089I24Rik lincRNA Interval_70629 chr17 12531966 12532421 + 0 NA Intergenic Intergenic -24777 ENSMUSG00000023828.3 ENSMUSG00000023828 ENSMUST00000024595 Slc22a3 protein_coding Interval_38337 chr12 77488179 77488478 + 0 NA Intergenic Intergenic 38070 ENSMUSG00000111939.1 ENSMUSG00000111939 ENSMUST00000219567 Gm48177 processed_pseudogene Interval_172404 chrX 17855061 17856157 + 0 NA Intergenic Intergenic 25897 ENSMUSG00000096716.1 ENSMUSG00000096716 ENSMUST00000152394 Gm5755 processed_pseudogene Interval_69572 chr16 94353166 94353606 + 0 NA Intergenic Intergenic 5926 ENSMUSG00000089814.1 ENSMUSG00000089814 ENSMUST00000117891 Gm15310 transcribed_processed_pseudogene Interval_30832 chr11 96765841 96768265 + 0 NA TTS (ENSMUSG00000020876.14) protein_coding-TTS (ENSMUSG00000020876.14) 251 ENSMUSG00000085242.1 ENSMUSG00000085242 ENSMUST00000124865 Gm11537 antisense Interval_171681 chr9 120120484 120120719 + 0 NA TTS (ENSMUSG00000032519.11) protein_coding-TTS (ENSMUSG00000032519.11) 5612 ENSMUSG00000032519.11 ENSMUSG00000032519 ENSMUST00000154969 Slc25a38 protein_coding Interval_129249 chr5 118429741 118430123 + 0 NA Intergenic Intergenic -11114 ENSMUSG00000093041.1 ENSMUSG00000093041 ENSMUST00000175300 Gm26455 miRNA Interval_46225 chr13 62754228 62754707 + 0 NA intron (ENSMUSG00000074863.5, intron 1 of 3) protein_coding-intron (ENSMUSG00000074863.5, intron 1 of 6) -6272 ENSMUSG00000096098.1 ENSMUSG00000096098 ENSMUST00000178651 Mir713 miRNA Interval_40919 chr12 109896715 109897214 + 0 NA Intergenic Intergenic -1871 ENSMUSG00000113625.1 ENSMUSG00000113625 ENSMUST00000222259 Gm3379 processed_pseudogene Interval_63306 chr15 100227131 100229309 + 0 NA promoter-TSS (ENSMUSG00000023027.13) protein_coding-promoter-TSS (ENSMUSG00000023027.13) -3978 ENSMUSG00000023027.13 ENSMUSG00000023027 ENSMUST00000166435 Atf1 protein_coding Interval_21986 chr11 5570830 5571384 + 0 NA exon (ENSMUSG00000020481.15, exon 2 of 7) protein_coding-exon (ENSMUSG00000020481.15, exon 2 of 7) -2976 ENSMUSG00000020481.15 ENSMUSG00000020481 ENSMUST00000137933 Ankrd36 protein_coding Interval_41216 chr12 111875853 111876568 + 0 NA intron (ENSMUSG00000021285.15, intron 1 of 3) protein_coding-intron (ENSMUSG00000021285.15, intron 1 of 16) -15074 ENSMUSG00000113357.1 ENSMUSG00000113357 ENSMUST00000222018 Gm19195 processed_pseudogene Interval_137383 chr6 71836558 71838820 + 0 NA intron (ENSMUSG00000052337.15, intron 1 of 13) protein_coding-intron (ENSMUSG00000052337.15, intron 1 of 14) -5979 ENSMUSG00000108466.1 ENSMUSG00000108466 ENSMUST00000206975 Gm44771 TEC Interval_23651 chr11 24091705 24092024 + 0 NA TTS (ENSMUSG00000000861.15) protein_coding-TTS (ENSMUSG00000000861.15) 15305 ENSMUSG00000085167.1 ENSMUSG00000085167 ENSMUST00000148087 Gm12063 lincRNA Interval_131083 chr5 134981318 134981945 + 0 NA Intergenic Intergenic -4583 ENSMUSG00000070473.4 ENSMUSG00000070473 ENSMUST00000094245 Cldn3 protein_coding Interval_115561 chr4 100798260 100798843 + 0 NA intron (ENSMUSG00000028532.14, intron 1 of 26) protein_coding-intron (ENSMUSG00000028532.14, intron 1 of 26) -196159 ENSMUSG00000028532.14 ENSMUSG00000028532 ENSMUST00000136430 Cachd1 protein_coding Interval_26437 chr11 57836704 57837478 + 0 NA Intergenic Intergenic -4273 ENSMUSG00000037335.13 ENSMUSG00000037335 ENSMUST00000108845 Hand1 protein_coding Interval_47639 chr13 90592820 90593887 + 0 NA Intergenic Intergenic 10024 ENSMUSG00000094277.2 ENSMUSG00000094277 ENSMUST00000179654 Gm21726 processed_pseudogene Interval_150017 chr7 104917059 104917334 + 0 NA promoter-TSS (ENSMUSG00000056782.5) protein_coding-promoter-TSS (ENSMUSG00000056782.5) 4286 ENSMUSG00000056782.5 ENSMUSG00000056782 ENSMUST00000071362 Olfr667 protein_coding Interval_100310 chr2 168312561 168312963 + 0 NA Intergenic Intergenic -17641 ENSMUSG00000086783.1 ENSMUSG00000086783 ENSMUST00000148309 Gm14262 lincRNA Interval_168364 chr9 79673665 79674047 + 0 NA intron (ENSMUSG00000032332.17, intron 23 of 64) protein_coding-intron (ENSMUSG00000032332.17, intron 23 of 65) -14920 ENSMUSG00000086608.1 ENSMUSG00000086608 ENSMUST00000123894 4930562D21Rik antisense Interval_97524 chr2 138514385 138515838 + 0 NA intron (ENSMUSG00000062098.11, intron 5 of 5) protein_coding-intron (ENSMUSG00000062098.11, intron 5 of 5) -74281 ENSMUSG00000085911.1 ENSMUSG00000085911 ENSMUST00000155923 Gm14061 lincRNA Interval_80351 chr18 39831683 39832504 + 0 NA Intergenic Intergenic 58596 ENSMUSG00000051732.2 ENSMUSG00000051732 ENSMUST00000063219 Pabpc2 protein_coding Interval_33459 chr11 116657234 116658513 + 0 NA intron (ENSMUSG00000075410.13, intron 3 of 6) protein_coding-intron (ENSMUSG00000075410.13, intron 2 of 4) -3560 ENSMUSG00000020810.5 ENSMUSG00000020810 ENSMUST00000021166 Cygb protein_coding Interval_104506 chr3 66980668 66982666 + 0 NA promoter-TSS (ENSMUSG00000027833.16) protein_coding-promoter-TSS (ENSMUSG00000027833.16) -2856 ENSMUSG00000027833.16 ENSMUSG00000027833 ENSMUST00000195261 Shox2 protein_coding Interval_70924 chr17 15998863 15999058 + 0 NA Intergenic Intergenic 153680 ENSMUSG00000116545.1 ENSMUSG00000116545 ENSMUST00000231929 Eif3s6-ps3 processed_pseudogene Interval_101316 chr2 180385308 180386803 + 0 NA promoter-TSS (ENSMUSG00000084843.1) lincRNA-promoter-TSS (ENSMUSG00000084843.1) -170 ENSMUSG00000084843.1 ENSMUSG00000084843 ENSMUST00000145549 B230312C02Rik lincRNA Interval_18868 chr10 91535178 91535851 + 0 NA Intergenic Intergenic -87134 ENSMUSG00000111051.1 ENSMUSG00000111051 ENSMUST00000213414 Gm47084 processed_pseudogene Interval_6256 chr1 104851524 104851719 + 0 NA intron (ENSMUSG00000050840.8, intron 1 of 11) protein_coding-intron (ENSMUSG00000050840.8, intron 1 of 11) 29414 ENSMUSG00000084704.1 ENSMUSG00000084704 ENSMUST00000122755 n-R5s216 rRNA Interval_39262 chr12 86297634 86297934 + 0 NA intron (ENSMUSG00000097488.1, intron 2 of 3) lincRNA-intron (ENSMUSG00000097488.1, intron 2 of 3) 8222 ENSMUSG00000097488.1 ENSMUSG00000097488 ENSMUST00000181495 4732487G21Rik lincRNA Interval_46021 chr13 60290245 60290535 + 0 NA Intergenic Intergenic -3282 ENSMUSG00000080668.1 ENSMUSG00000080668 ENSMUST00000117018 Gm24999 miRNA Interval_155078 chr8 26224896 26225356 + 0 NA Intergenic Intergenic 5665 ENSMUSG00000105292.1 ENSMUSG00000105292 ENSMUST00000104842 Gm44299 miRNA Interval_52625 chr14 48098454 48099977 + 0 NA Intergenic Intergenic -19463 ENSMUSG00000062081.6 ENSMUSG00000062081 ENSMUST00000180532 Gm6055 processed_pseudogene Interval_62695 chr15 96324939 96325936 + 0 NA intron (ENSMUSG00000033237.19, intron 3 of 4) protein_coding-intron (ENSMUSG00000033237.19, intron 3 of 20) -40942 ENSMUSG00000097536.2 ENSMUSG00000097536 ENSMUST00000185067 2610037D02Rik lincRNA Interval_140639 chr6 120262540 120263405 + 0 NA intron (ENSMUSG00000041372.10, intron 1 of 19) protein_coding-intron (ENSMUSG00000041372.10, intron 1 of 19) 31587 ENSMUSG00000041372.10 ENSMUSG00000041372 ENSMUST00000212457 B4galnt3 protein_coding Interval_90977 chr2 33882726 33883495 + 0 NA intron (ENSMUSG00000038740.9, intron 1 of 2) protein_coding-intron (ENSMUSG00000038740.9, intron 1 of 9) 59035 ENSMUSG00000085987.2 ENSMUSG00000085987 ENSMUST00000134271 Gm13403 lincRNA Interval_111790 chr4 29135915 29136207 + 0 NA Intergenic Intergenic 10115 ENSMUSG00000080911.1 ENSMUSG00000080911 ENSMUST00000121660 Gm11918 processed_pseudogene Interval_9384 chr1 156706610 156707400 + 0 NA intron (ENSMUSG00000033557.17, intron 1 of 7) protein_coding-intron (ENSMUSG00000033557.17, intron 1 of 7) -8120 ENSMUSG00000033557.17 ENSMUSG00000033557 ENSMUST00000147931 Fam20b protein_coding Interval_107895 chr3 116651196 116652394 + 0 NA intron (ENSMUSG00000105103.1, intron 2 of 6) protein_coding-intron (ENSMUSG00000089911.4, intron 1 of 11) -11937 ENSMUSG00000106125.1 ENSMUSG00000106125 ENSMUST00000197000 4930512P04Rik lincRNA Interval_52505 chr14 47175221 47175518 + 0 NA intron (ENSMUSG00000037580.10, intron 1 of 5) protein_coding-intron (ENSMUSG00000037580.10, intron 1 of 5) 3177 ENSMUSG00000115764.1 ENSMUSG00000115764 ENSMUST00000226918 Gm18811 processed_pseudogene Interval_161993 chr8 124306442 124306993 + 0 NA promoter-TSS (ENSMUSG00000089745.1) antisense-promoter-TSS (ENSMUSG00000089745.1) -210 ENSMUSG00000089745.1 ENSMUSG00000089745 ENSMUST00000162325 1810008B01Rik antisense Interval_11271 chr1 180610020 180610324 + 0 NA Intergenic Intergenic 11184 ENSMUSG00000026496.11 ENSMUSG00000026496 ENSMUST00000195560 Parp1 protein_coding Interval_56870 chr14 122609720 122610279 + 0 NA exon (ENSMUSG00000115256.1, exon 1 of 1) processed_pseudogene-exon (ENSMUSG00000115256.1, exon 1 of 1) 114 ENSMUSG00000115256.1 ENSMUSG00000115256 ENSMUST00000227639 Gm49259 processed_pseudogene Interval_79391 chr18 31592107 31592366 + 0 NA intron (ENSMUSG00000024259.9, intron 7 of 7) protein_coding-intron (ENSMUSG00000024259.9, intron 7 of 7) -17276 ENSMUSG00000092124.1 ENSMUSG00000092124 ENSMUST00000164667 B930094E09Rik protein_coding Interval_109839 chr3 148838612 148839990 + 0 NA exon (ENSMUSG00000028184.12, exon 11 of 23) protein_coding-exon (ENSMUSG00000028184.12, exon 11 of 23) -149851 ENSMUSG00000104786.1 ENSMUSG00000104786 ENSMUST00000196445 Gm43573 antisense Interval_131215 chr5 135857031 135857398 + 0 NA exon (ENSMUSG00000039860.19, exon 11 of 16) protein_coding-exon (ENSMUSG00000039860.19, exon 11 of 16) -9403 ENSMUSG00000039860.19 ENSMUSG00000039860 ENSMUST00000150566 Srrm3 protein_coding Interval_97038 chr2 130704173 130705893 + 0 NA TTS (ENSMUSG00000084694.1) misc_RNA-TTS (ENSMUSG00000084694.1) 663 ENSMUSG00000084694.1 ENSMUSG00000084694 ENSMUST00000122745 Gm24893 misc_RNA Interval_37563 chr12 69892322 69894112 + 0 NA promoter-TSS (ENSMUSG00000034761.15) protein_coding-promoter-TSS (ENSMUSG00000034761.15) -114 ENSMUSG00000034761.15 ENSMUSG00000034761 ENSMUST00000147451 Map4k5 protein_coding Interval_78790 chr18 20648398 20648797 + 0 NA intron (ENSMUSG00000085595.1, intron 1 of 2) antisense-intron (ENSMUSG00000085595.1, intron 1 of 2) 16663 ENSMUSG00000085595.1 ENSMUSG00000085595 ENSMUST00000130296 Gm16090 antisense Interval_137159 chr6 68618251 68618466 + 0 NA Intergenic Intergenic 14084 ENSMUSG00000094420.2 ENSMUSG00000094420 ENSMUST00000103328 Igkv10-96 IG_V_gene Interval_26163 chr11 54829379 54829573 + 0 NA promoter-TSS (ENSMUSG00000088231.1) snRNA-promoter-TSS (ENSMUSG00000088231.1) -235 ENSMUSG00000088231.1 ENSMUSG00000088231 ENSMUST00000157606 Gm25426 snRNA Interval_42729 chr13 18638820 18639146 + 0 NA Intergenic Intergenic 6366 ENSMUSG00000114118.1 ENSMUSG00000114118 ENSMUST00000221183 Gm48829 lincRNA Interval_80484 chr18 42603367 42603646 + 0 NA intron (ENSMUSG00000117719.1, intron 2 of 2) lincRNA-intron (ENSMUSG00000117719.1, intron 2 of 2) 8154 ENSMUSG00000117882.1 ENSMUSG00000117882 ENSMUST00000237737 Gm50213 processed_pseudogene Interval_120883 chr4 151288962 151289473 + 0 NA intron (ENSMUSG00000014592.21, intron 6 of 24) protein_coding-intron (ENSMUSG00000014592.21, intron 6 of 23) -87253 ENSMUSG00000085593.1 ENSMUSG00000085593 ENSMUST00000129097 4930589P08Rik antisense Interval_107704 chr3 111406132 111406967 + 0 NA Intergenic Intergenic -83692 ENSMUSG00000106100.1 ENSMUSG00000106100 ENSMUST00000199881 Gm9314 processed_pseudogene Interval_17851 chr10 80398653 80400087 + 0 NA promoter-TSS (ENSMUSG00000035478.14) protein_coding-promoter-TSS (ENSMUSG00000035478.14) -4200 ENSMUSG00000035478.14 ENSMUSG00000035478 ENSMUST00000125618 Mbd3 protein_coding Interval_133838 chr6 13134053 13134248 + 0 NA Intergenic Intergenic 22851 ENSMUSG00000077643.1 ENSMUSG00000077643 ENSMUST00000104455 Gm24985 snoRNA Interval_25550 chr11 49712030 49713472 + 0 NA promoter-TSS (ENSMUSG00000020362.13) protein_coding-promoter-TSS (ENSMUSG00000020362.13) 14871 ENSMUSG00000081570.1 ENSMUSG00000081570 ENSMUST00000120146 Gm12192 processed_pseudogene Interval_29379 chr11 83529240 83529459 + 0 NA intron (ENSMUSG00000035042.2, intron 1 of 1) protein_coding-intron (ENSMUSG00000035042.2, intron 1 of 2) 1164 ENSMUSG00000035042.2 ENSMUSG00000035042 ENSMUST00000125015 Ccl5 protein_coding Interval_153043 chr7 141032478 141033066 + 0 NA Intergenic Intergenic 3641 ENSMUSG00000091441.1 ENSMUSG00000091441 ENSMUST00000170892 Gm17387 protein_coding Interval_69944 chr17 3387708 3387895 + 0 NA intron (ENSMUSG00000023800.15, intron 1 of 26) protein_coding-intron (ENSMUSG00000023800.15, intron 1 of 26) -40734 ENSMUSG00000115330.1 ENSMUSG00000115330 ENSMUST00000226386 Gm49221 processed_pseudogene Interval_126120 chr5 77653284 77653564 + 0 NA Intergenic Intergenic 16422 ENSMUSG00000089415.1 ENSMUSG00000089415 ENSMUST00000158790 Gm22011 snoRNA Interval_21970 chr11 5480531 5481057 + 0 NA Intergenic Intergenic 14652 ENSMUSG00000085232.3 ENSMUSG00000085232 ENSMUST00000145746 Gm11962 processed_pseudogene Interval_131302 chr5 136268919 136270615 + 0 NA exon (ENSMUSG00000029705.17, exon 24 of 24) protein_coding-exon (ENSMUSG00000029705.17, exon 24 of 24) -5229 ENSMUSG00000086220.1 ENSMUSG00000086220 ENSMUST00000148082 Gm16599 antisense Interval_120610 chr4 149683192 149685199 + 0 NA intron (ENSMUSG00000039936.18, intron 1 of 2) protein_coding-intron (ENSMUSG00000039936.18, intron 1 of 23) -10001 ENSMUSG00000039936.18 ENSMUSG00000039936 ENSMUST00000124510 Pik3cd protein_coding Interval_52155 chr14 37260750 37261538 + 0 NA Intergenic Intergenic 36275 ENSMUSG00000077306.1 ENSMUSG00000077306 ENSMUST00000104118 Gm22469 snoRNA Interval_66554 chr16 35060807 35061426 + 0 NA intron (ENSMUSG00000035376.10, intron 1 of 3) protein_coding-intron (ENSMUSG00000035376.10, intron 3 of 6) 12501 ENSMUSG00000035376.10 ENSMUSG00000035376 ENSMUST00000231556 Hacd2 protein_coding Interval_42873 chr13 20894942 20895386 + 0 NA intron (ENSMUSG00000021322.8, intron 4 of 20) protein_coding-intron (ENSMUSG00000021322.8, intron 4 of 20) 50410 ENSMUSG00000088989.1 ENSMUSG00000088989 ENSMUST00000158364 Gm25605 snRNA Interval_92066 chr2 52961025 52961279 + 0 NA intron (ENSMUSG00000036053.17, intron 1 of 26) protein_coding-intron (ENSMUSG00000036053.17, intron 1 of 26) 103292 ENSMUSG00000036053.17 ENSMUSG00000036053 ENSMUST00000050719 Fmnl2 protein_coding Interval_77702 chr17 94478741 94479028 + 0 NA Intergenic Intergenic -129301 ENSMUSG00000117476.1 ENSMUSG00000117476 ENSMUST00000234959 Gm9416 processed_pseudogene Interval_15395 chr10 45434871 45435090 + 0 NA intron (ENSMUSG00000063804.8, intron 2 of 3) protein_coding-intron (ENSMUSG00000063804.8, intron 2 of 4) 51415 ENSMUSG00000063804.8 ENSMUSG00000063804 ENSMUST00000214555 Lin28b protein_coding Interval_168660 chr9 85596791 85597322 + 0 NA Intergenic Intergenic 42511 ENSMUSG00000111386.1 ENSMUSG00000111386 ENSMUST00000213802 Gm48842 lincRNA Interval_126935 chr5 97525641 97526808 + 0 NA intron (ENSMUSG00000097516.7, intron 3 of 4) lincRNA-intron (ENSMUSG00000097516.7, intron 2 of 3) -69203 ENSMUSG00000050553.3 ENSMUSG00000050553 ENSMUST00000059657 Gk2 protein_coding Interval_137386 chr6 71847368 71847689 + 0 NA intron (ENSMUSG00000052337.15, intron 3 of 13) protein_coding-intron (ENSMUSG00000052337.15, intron 3 of 14) -15818 ENSMUSG00000108466.1 ENSMUSG00000108466 ENSMUST00000206975 Gm44771 TEC Interval_171833 chr9 121600444 121601456 + 0 NA intron (ENSMUSG00000084995.8, intron 2 of 3) protein_coding-intron (ENSMUSG00000032530.14, intron 1 of 5) -1894 ENSMUSG00000084995.8 ENSMUSG00000084995 ENSMUST00000213548 Lyzl4os antisense Interval_2455 chr1 39492290 39492528 + 0 NA Intergenic Intergenic -27124 ENSMUSG00000104827.1 ENSMUSG00000104827 ENSMUST00000197298 Gm24826 snoRNA Interval_48660 chr13 100897855 100898112 + 0 NA intron (ENSMUSG00000100596.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000100596.1, intron 1 of 2) 11906 ENSMUSG00000114738.1 ENSMUSG00000114738 ENSMUST00000225803 Gm41041 processed_pseudogene Interval_11263 chr1 180570832 180572679 + 0 NA intron (ENSMUSG00000026496.11, intron 1 of 2) protein_coding-intron (ENSMUSG00000026496.11, intron 1 of 22) -15446 ENSMUSG00000098926.1 ENSMUSG00000098926 ENSMUST00000183443 Mir6904 miRNA Interval_145906 chr7 41590249 41591445 + 0 NA Intergenic Intergenic -4045 ENSMUSG00000108482.1 ENSMUSG00000108482 ENSMUST00000205343 Gm45078 processed_pseudogene Interval_114308 chr4 72144922 72146908 + 0 NA intron (ENSMUSG00000008305.18, intron 6 of 17) protein_coding-intron (ENSMUSG00000008305.18, intron 8 of 19) -4602 ENSMUSG00000008305.18 ENSMUSG00000008305 ENSMUST00000134225 Tle1 protein_coding Interval_43304 chr13 28913208 28913442 + 0 NA Intergenic Intergenic -15380 ENSMUSG00000113352.1 ENSMUSG00000113352 ENSMUST00000223473 Gm34639 lincRNA Interval_115068 chr4 89173514 89173877 + 0 NA intron (ENSMUSG00000062937.7, intron 6 of 7) protein_coding-intron (ENSMUSG00000062937.7, intron 6 of 7) -2679 ENSMUSG00000062937.7 ENSMUSG00000062937 ENSMUST00000204571 Mtap protein_coding Interval_81840 chr18 65184588 65185074 + 0 NA intron (ENSMUSG00000024589.18, intron 4 of 16) protein_coding-intron (ENSMUSG00000024589.18, intron 17 of 29) -59456 ENSMUSG00000118017.1 ENSMUSG00000118017 ENSMUST00000235231 Gm29966 lincRNA Interval_803 chr1 11492590 11493727 + 0 NA intron (ENSMUSG00000057715.13, intron 1 of 1) protein_coding-intron (ENSMUSG00000057715.13, intron 1 of 13) 76240 ENSMUSG00000103825.1 ENSMUSG00000103825 ENSMUST00000194502 Gm38178 TEC Interval_138104 chr6 85205992 85207470 + 0 NA Intergenic Intergenic 13212 ENSMUSG00000033726.8 ENSMUSG00000033726 ENSMUST00000173919 Emx1 protein_coding Interval_168434 chr9 80277295 80278284 + 0 NA intron (ENSMUSG00000033577.18, intron 20 of 35) protein_coding-intron (ENSMUSG00000033577.18, intron 20 of 32) -12339 ENSMUSG00000099016.1 ENSMUSG00000099016 ENSMUST00000183413 Gm27227 antisense Interval_124571 chr5 51386607 51386815 + 0 NA Intergenic Intergenic 97594 ENSMUSG00000105442.1 ENSMUSG00000105442 ENSMUST00000198724 Gm42614 TEC Interval_94617 chr2 92695890 92696226 + 0 NA Intergenic Intergenic -46172 ENSMUSG00000085976.1 ENSMUSG00000085976 ENSMUST00000152230 Gm13816 lincRNA Interval_57101 chr15 6385883 6387329 + 0 NA promoter-TSS (ENSMUSG00000022150.16) protein_coding-promoter-TSS (ENSMUSG00000022150.16) -35634 ENSMUSG00000022150.16 ENSMUSG00000022150 ENSMUST00000161558 Dab2 protein_coding Interval_3276 chr1 55446109 55446476 + 0 NA TTS (ENSMUSG00000102145.1) TEC-TTS (ENSMUSG00000102145.1) -1268 ENSMUSG00000100309.1 ENSMUSG00000100309 ENSMUST00000186507 Gm6644 processed_pseudogene Interval_4553 chr1 74973565 74973828 + 0 NA intron (ENSMUSG00000026162.7, intron 2 of 4) protein_coding-intron (ENSMUSG00000026162.7, intron 2 of 4) 19444 ENSMUSG00000103145.1 ENSMUSG00000103145 ENSMUST00000194616 Gm37744 TEC Interval_94527 chr2 91949725 91950932 + 0 NA promoter-TSS (ENSMUSG00000040479.12) protein_coding-promoter-TSS (ENSMUSG00000040479.12) 4625 ENSMUSG00000095332.2 ENSMUSG00000095332 ENSMUST00000238356 Gm9821 antisense Interval_22428 chr11 9988705 9988975 + 0 NA Intergenic Intergenic -250497 ENSMUSG00000082312.1 ENSMUSG00000082312 ENSMUST00000117538 Gm11996 processed_pseudogene Interval_3995 chr1 65793210 65793728 + 0 NA Intergenic Intergenic -133069 ENSMUSG00000025945.11 ENSMUSG00000025945 ENSMUST00000114027 Crygf protein_coding Interval_72612 chr17 31036429 31036783 + 0 NA Intergenic Intergenic -21121 ENSMUSG00000024030.7 ENSMUSG00000024030 ENSMUST00000236241 Abcg1 protein_coding Interval_59099 chr15 43758109 43758604 + 0 NA Intergenic Intergenic -50105 ENSMUSG00000115407.1 ENSMUSG00000115407 ENSMUST00000226778 Gm2140 processed_pseudogene Interval_34693 chr12 8721786 8723463 + 0 NA TTS (ENSMUSG00000020594.14) protein_coding-TTS (ENSMUSG00000020594.14) 48490 ENSMUSG00000020594.14 ENSMUSG00000020594 ENSMUST00000171608 Pum2 protein_coding Interval_112955 chr4 46417326 46418471 + 0 NA Intergenic Intergenic 2404 ENSMUSG00000082242.1 ENSMUSG00000082242 ENSMUST00000122308 Gm12443 processed_pseudogene Interval_24837 chr11 40158408 40160153 + 0 NA intron (ENSMUSG00000085301.1, intron 5 of 7) lincRNA-intron (ENSMUSG00000085301.1, intron 5 of 7) 151086 ENSMUSG00000085301.1 ENSMUSG00000085301 ENSMUST00000130945 Gm12132 lincRNA Interval_154110 chr8 12785654 12788089 + 0 NA intron (ENSMUSG00000031441.15, intron 1 of 27) protein_coding-intron (ENSMUSG00000031441.15, intron 1 of 29) 45048 ENSMUSG00000084780.7 ENSMUSG00000084780 ENSMUST00000135138 Gm15350 antisense Interval_158400 chr8 83449562 83451306 + 0 NA intron (ENSMUSG00000063253.11, intron 1 of 1) protein_coding-intron (ENSMUSG00000063253.11, intron 1 of 3) -12607 ENSMUSG00000063253.11 ENSMUSG00000063253 ENSMUST00000212849 Scoc protein_coding Interval_3480 chr1 58736824 58737641 + 0 NA intron (ENSMUSG00000026031.15, intron 6 of 9) protein_coding-intron (ENSMUSG00000026031.15, intron 6 of 9) 23346 ENSMUSG00000026031.15 ENSMUSG00000026031 ENSMUST00000123032 Cflar protein_coding Interval_9154 chr1 154117388 154118884 + 0 NA promoter-TSS (ENSMUSG00000100627.6) lincRNA-promoter-TSS (ENSMUSG00000100627.6) -185 ENSMUSG00000100627.6 ENSMUSG00000100627 ENSMUST00000190485 A830008E24Rik lincRNA Interval_121780 chr5 8034043 8036394 + 0 NA Intergenic Intergenic 17489 ENSMUSG00000086528.1 ENSMUSG00000086528 ENSMUST00000146887 Gm15731 antisense Interval_27492 chr11 68211979 68212915 + 0 NA exon (ENSMUSG00000020902.12, exon 7 of 7) protein_coding-exon (ENSMUSG00000020902.12, exon 7 of 7) -8445 ENSMUSG00000099174.1 ENSMUSG00000099174 ENSMUST00000183592 Mir6406 miRNA Interval_127277 chr5 102061544 102061784 + 0 NA intron (ENSMUSG00000043940.15, intron 1 of 15) protein_coding-intron (ENSMUSG00000043940.15, intron 1 of 66) -3595 ENSMUSG00000105761.1 ENSMUSG00000105761 ENSMUST00000197792 Gm43787 TEC Interval_139817 chr6 109149064 109149260 + 0 NA Intergenic Intergenic 23477 ENSMUSG00000107501.1 ENSMUSG00000107501 ENSMUST00000203862 Gm29781 processed_pseudogene Interval_156695 chr8 57403233 57404199 + 0 NA intron (ENSMUSG00000109629.1, intron 1 of 3) lincRNA-intron (ENSMUSG00000109629.1, intron 1 of 3) 612 ENSMUSG00000109629.1 ENSMUSG00000109629 ENSMUST00000211592 Gm34099 lincRNA Interval_151902 chr7 127437555 127438121 + 0 NA intron (ENSMUSG00000108483.1, intron 2 of 2) lincRNA-intron (ENSMUSG00000108483.1, intron 2 of 2) 3416 ENSMUSG00000108483.1 ENSMUSG00000108483 ENSMUST00000206354 Gm45184 lincRNA Interval_119953 chr4 141095234 141095587 + 0 NA intron (ENSMUSG00000045004.3, intron 5 of 14) protein_coding-intron (ENSMUSG00000045004.3, intron 5 of 14) -8575 ENSMUSG00000045004.3 ENSMUSG00000045004 ENSMUST00000181353 Spata21 protein_coding Interval_122191 chr5 19262374 19263389 + 0 NA intron (ENSMUSG00000040003.18, intron 1 of 2) protein_coding-intron (ENSMUSG00000040003.18, intron 1 of 22) -36713 ENSMUSG00000097626.5 ENSMUSG00000097626 ENSMUST00000197496 4921504A21Rik antisense Interval_129680 chr5 121700201 121700650 + 0 NA Intergenic Intergenic -11435 ENSMUSG00000042605.16 ENSMUSG00000042605 ENSMUST00000199864 Atxn2 protein_coding Interval_101336 chr2 180545005 180545475 + 0 NA TTS (ENSMUSG00000027568.9) protein_coding-TTS (ENSMUSG00000027568.9) -36064 ENSMUSG00000027569.15 ENSMUSG00000027569 ENSMUST00000149969 Mrgbp protein_coding Interval_156946 chr8 62096151 62096514 + 0 NA intron (ENSMUSG00000031635.14, intron 2 of 7) protein_coding-intron (ENSMUSG00000031635.14, intron 2 of 11) 26818 ENSMUSG00000031635.14 ENSMUSG00000031635 ENSMUST00000210799 Anxa10 protein_coding Interval_148282 chr7 80274915 80275199 + 0 NA intron (ENSMUSG00000030534.13, intron 2 of 5) protein_coding-intron (ENSMUSG00000030534.13, intron 3 of 22) 13837 ENSMUSG00000047084.8 ENSMUSG00000047084 ENSMUST00000138005 Ngrn protein_coding Interval_48744 chr13 102678804 102679111 + 0 NA Intergenic Intergenic -14654 ENSMUSG00000021624.9 ENSMUSG00000021624 ENSMUST00000172138 Cd180 protein_coding Interval_80348 chr18 39765613 39765801 + 0 NA Intergenic Intergenic -7790 ENSMUSG00000051732.2 ENSMUSG00000051732 ENSMUST00000063219 Pabpc2 protein_coding Interval_164149 chr9 31993805 31994521 + 0 NA intron (ENSMUSG00000111771.1, intron 2 of 3) lincRNA-intron (ENSMUSG00000111771.1, intron 2 of 3) 11297 ENSMUSG00000111771.1 ENSMUSG00000111771 ENSMUST00000216368 Gm47465 lincRNA Interval_132716 chr5 147345745 147346137 + 0 NA intron (ENSMUSG00000042817.15, intron 18 of 23) protein_coding-intron (ENSMUSG00000042817.15, intron 18 of 23) -19607 ENSMUSG00000106939.1 ENSMUSG00000106939 ENSMUST00000201667 Gm29778 processed_pseudogene Interval_131712 chr5 139449610 139450037 + 0 NA intron (ENSMUSG00000053553.11, intron 1 of 2) protein_coding-intron (ENSMUSG00000053553.11, intron 2 of 4) 6224 ENSMUSG00000095016.1 ENSMUSG00000095016 ENSMUST00000177923 Gm26285 snRNA Interval_2404 chr1 39017497 39018495 + 0 NA Intergenic Intergenic 25318 ENSMUSG00000103046.1 ENSMUSG00000103046 ENSMUST00000194994 Gm37309 TEC Interval_109713 chr3 146227505 146228418 + 0 NA intron (ENSMUSG00000036832.5, intron 1 of 2) protein_coding-intron (ENSMUSG00000036832.5, intron 1 of 2) 6998 ENSMUSG00000036832.5 ENSMUSG00000036832 ENSMUST00000039164 Lpar3 protein_coding Interval_62392 chr15 91703340 91703657 + 0 NA intron (ENSMUSG00000036273.15, intron 11 of 50) protein_coding-intron (ENSMUSG00000036273.15, intron 11 of 50) -86061 ENSMUSG00000087965.1 ENSMUSG00000087965 ENSMUST00000157340 Gm25389 misc_RNA Interval_163878 chr9 27409781 27410601 + 0 NA Intergenic Intergenic 12981 ENSMUSG00000031991.10 ENSMUSG00000031991 ENSMUST00000215326 Spata19 protein_coding Interval_155818 chr8 39328991 39330180 + 0 NA intron (ENSMUSG00000109827.1, intron 2 of 3) lincRNA-intron (ENSMUSG00000109827.1, intron 2 of 3) -17891 ENSMUSG00000109955.1 ENSMUSG00000109955 ENSMUST00000211458 Gm18644 processed_pseudogene Interval_15063 chr10 42286194 42286423 + 0 NA Intergenic Intergenic -23467 ENSMUSG00000088165.1 ENSMUSG00000088165 ENSMUST00000157540 Gm23533 misc_RNA Interval_138284 chr6 86908613 86908976 + 0 NA intron (ENSMUSG00000057230.14, intron 1 of 2) protein_coding-intron (ENSMUSG00000057230.14, intron 1 of 19) 35008 ENSMUSG00000108152.1 ENSMUSG00000108152 ENSMUST00000205007 Gm44152 TEC Interval_161895 chr8 123514632 123515539 + 0 NA intron (ENSMUSG00000031970.16, intron 1 of 2) protein_coding-intron (ENSMUSG00000092329.1, intron 1 of 15) 305 ENSMUSG00000031970.16 ENSMUSG00000031970 ENSMUST00000176155 Dbndd1 protein_coding Interval_20034 chr10 112322858 112323978 + 0 NA intron (ENSMUSG00000035681.7, intron 1 of 4) protein_coding-intron (ENSMUSG00000035681.7, intron 2 of 4) -92277 ENSMUSG00000112564.1 ENSMUSG00000112564 ENSMUST00000219794 Gm47419 antisense Interval_59906 chr15 61489794 61490035 + 0 NA Intergenic Intergenic 54269 ENSMUSG00000116109.1 ENSMUSG00000116109 ENSMUST00000229194 Gm49498 lincRNA Interval_1983 chr1 35478290 35478781 + 0 NA Intergenic Intergenic 172762 ENSMUSG00000104417.1 ENSMUSG00000104417 ENSMUST00000195168 Gm37068 lincRNA Interval_115297 chr4 95517212 95517496 + 0 NA Intergenic Intergenic -6690 ENSMUSG00000065745.1 ENSMUSG00000065745 ENSMUST00000083811 Gm25004 snRNA Interval_166487 chr9 59982257 59983370 + 0 NA exon (ENSMUSG00000032289.15, exon 9 of 12) protein_coding-exon (ENSMUSG00000032289.15, exon 9 of 12) -21042 ENSMUSG00000084847.7 ENSMUSG00000084847 ENSMUST00000133523 Gm15507 lincRNA Interval_33531 chr11 117072051 117072745 + 0 NA Intergenic Intergenic -4066 ENSMUSG00000086859.4 ENSMUSG00000086859 ENSMUST00000182811 Snhg20 lincRNA Interval_171519 chr9 118995050 118995840 + 0 NA intron (ENSMUSG00000047409.13, intron 1 of 5) protein_coding-intron (ENSMUSG00000047409.13, intron 1 of 7) -36351 ENSMUSG00000065513.1 ENSMUSG00000065513 ENSMUST00000083579 Mir26a-1 miRNA Interval_128982 chr5 116440074 116440742 + 0 NA exon (ENSMUSG00000063919.11, exon 13 of 13) protein_coding-exon (ENSMUSG00000063919.11, exon 13 of 13) 1688 ENSMUSG00000086219.7 ENSMUSG00000086219 ENSMUST00000126959 Srrm4os antisense Interval_169273 chr9 96037652 96038023 + 0 NA intron (ENSMUSG00000032410.13, intron 34 of 39) protein_coding-intron (ENSMUSG00000032410.13, intron 34 of 41) 2836 ENSMUSG00000100931.1 ENSMUSG00000100931 ENSMUST00000189281 Gm28085 antisense Interval_139102 chr6 95149944 95150163 + 0 NA Intergenic Intergenic 32069 ENSMUSG00000030031.14 ENSMUSG00000030031 ENSMUST00000145387 Kbtbd8 protein_coding Interval_75739 chr17 70966111 70966811 + 0 NA Intergenic Intergenic -1425 ENSMUSG00000117079.1 ENSMUSG00000117079 ENSMUST00000233521 Gm41611 lincRNA Interval_39231 chr12 86070698 86071837 + 0 NA intron (ENSMUSG00000021253.7, intron 1 of 6) protein_coding-intron (ENSMUSG00000021253.7, intron 1 of 6) 2094 ENSMUSG00000103301.1 ENSMUSG00000103301 ENSMUST00000192206 Gm37804 TEC Interval_87826 chr19 56312633 56312914 + 0 NA promoter-TSS (ENSMUSG00000025075.14) protein_coding-promoter-TSS (ENSMUSG00000025075.14) 24777 ENSMUSG00000025075.14 ENSMUSG00000025075 ENSMUST00000165522 Habp2 protein_coding Interval_8685 chr1 147759934 147760295 + 0 NA Intergenic Intergenic -229971 ENSMUSG00000101973.1 ENSMUSG00000101973 ENSMUST00000190402 Gm29516 processed_pseudogene Interval_107363 chr3 106684674 106685418 + 0 NA promoter-TSS (ENSMUSG00000056260.15) protein_coding-promoter-TSS (ENSMUSG00000056260.15) 48 ENSMUSG00000056260.15 ENSMUSG00000056260 ENSMUST00000150888 Lrif1 protein_coding Interval_3050 chr1 52684254 52684531 + 0 NA intron (ENSMUSG00000041439.15, intron 2 of 6) protein_coding-intron (ENSMUSG00000041439.15, intron 2 of 5) 20370 ENSMUSG00000100302.1 ENSMUSG00000100302 ENSMUST00000190228 Gm29670 sense_intronic Interval_84150 chr19 7556896 7558119 + 0 NA promoter-TSS (ENSMUSG00000060675.13) protein_coding-promoter-TSS (ENSMUSG00000060675.13) 30 ENSMUSG00000060675.13 ENSMUSG00000060675 ENSMUST00000136756 Plaat3 protein_coding Interval_53942 chr14 63566885 63567288 + 0 NA Intergenic Intergenic -38927 ENSMUSG00000035078.6 ENSMUSG00000035078 ENSMUST00000058679 Mtmr9 protein_coding Interval_144811 chr7 28386288 28387614 + 0 NA exon (ENSMUSG00000003444.8, exon 4 of 4) protein_coding-exon (ENSMUSG00000003444.8, exon 4 of 4) 5757 ENSMUSG00000003444.8 ENSMUSG00000003444 ENSMUST00000003536 Med29 protein_coding Interval_54231 chr14 66637391 66638829 + 0 NA exon (ENSMUSG00000045875.13, exon 2 of 4) protein_coding-exon (ENSMUSG00000045875.13, exon 2 of 4) 2779 ENSMUSG00000045875.13 ENSMUSG00000045875 ENSMUST00000161339 Adra1a protein_coding Interval_66436 chr16 33852996 33853479 + 0 NA intron (ENSMUSG00000022817.15, intron 2 of 14) protein_coding-intron (ENSMUSG00000022817.15, intron 2 of 14) -28957 ENSMUSG00000116916.1 ENSMUSG00000116916 ENSMUST00000231807 Gm34967 processed_pseudogene Interval_156532 chr8 49776237 49776600 + 0 NA Intergenic Intergenic -42519 ENSMUSG00000109907.1 ENSMUSG00000109907 ENSMUST00000209286 Gm45321 lincRNA Interval_106411 chr3 95995127 95996599 + 0 NA promoter-TSS (ENSMUSG00000015745.9) protein_coding-promoter-TSS (ENSMUSG00000015745.9) -65 ENSMUSG00000015745.9 ENSMUSG00000015745 ENSMUST00000157043 Plekho1 protein_coding Interval_4333 chr1 72790309 72790597 + 0 NA Intergenic Intergenic -58246 ENSMUSG00000039323.18 ENSMUSG00000039323 ENSMUST00000155703 Igfbp2 protein_coding Interval_118907 chr4 134392711 134393261 + 0 NA Intergenic Intergenic -4337 ENSMUSG00000037366.14 ENSMUSG00000037366 ENSMUST00000145626 Pafah2 protein_coding Interval_148318 chr7 80480208 80480615 + 0 NA exon (ENSMUSG00000030528.12, exon 14 of 22) protein_coding-exon (ENSMUSG00000030528.12, exon 14 of 22) -19587 ENSMUSG00000030528.12 ENSMUSG00000030528 ENSMUST00000205584 Blm protein_coding Interval_104010 chr3 57217952 57219181 + 0 NA Intergenic Intergenic -30686 ENSMUSG00000106286.1 ENSMUSG00000106286 ENSMUST00000200484 Gm43424 processed_pseudogene Interval_107252 chr3 104967628 104968458 + 0 NA Intergenic Intergenic -6322 ENSMUSG00000027840.5 ENSMUSG00000027840 ENSMUST00000198108 Wnt2b protein_coding Interval_65022 chr16 18530739 18531843 + 0 NA intron (ENSMUSG00000000884.17, intron 2 of 2) protein_coding-intron (ENSMUSG00000000884.17, intron 2 of 7) 32351 ENSMUSG00000000884.17 ENSMUSG00000000884 ENSMUST00000151253 Gnb1l protein_coding Interval_75329 chr17 65895135 65897089 + 0 NA Intergenic Intergenic 9692 ENSMUSG00000117250.1 ENSMUSG00000117250 ENSMUST00000233078 Gm49871 lincRNA Interval_93859 chr2 77556619 77557333 + 0 NA intron (ENSMUSG00000027016.17, intron 3 of 3) protein_coding-intron (ENSMUSG00000027016.17, intron 1 of 7) 94307 ENSMUSG00000085845.7 ENSMUSG00000085845 ENSMUST00000126572 Gm13944 antisense Interval_160984 chr8 116652974 116653224 + 0 NA intron (ENSMUSG00000031758.10, intron 1 of 6) protein_coding-intron (ENSMUSG00000031758.10, intron 1 of 6) 79892 ENSMUSG00000031758.10 ENSMUSG00000031758 ENSMUST00000109102 Cdyl2 protein_coding Interval_154052 chr8 12282002 12282922 + 0 NA exon (ENSMUSG00000101899.1, exon 1 of 1) lincRNA-exon (ENSMUSG00000101899.1, exon 1 of 1) 251 ENSMUSG00000101899.1 ENSMUSG00000101899 ENSMUST00000189500 Gm29175 lincRNA Interval_59503 chr15 54711400 54711593 + 0 NA Intergenic Intergenic -34206 ENSMUSG00000037362.8 ENSMUSG00000037362 ENSMUST00000050027 Ccn3 protein_coding Interval_54823 chr14 75508683 75508887 + 0 NA intron (ENSMUSG00000091722.2, intron 1 of 1) protein_coding-intron (ENSMUSG00000091722.2, intron 1 of 1) 52803 ENSMUSG00000091722.2 ENSMUSG00000091722 ENSMUST00000164848 Siah3 protein_coding Interval_83436 chr18 85490600 85490819 + 0 NA Intergenic Intergenic 226016 ENSMUSG00000117854.1 ENSMUSG00000117854 ENSMUST00000237113 Gm7612 processed_pseudogene Interval_146417 chr7 45772692 45773798 + 0 NA intron (ENSMUSG00000003271.17, intron 1 of 6) protein_coding-intron (ENSMUSG00000003271.17, intron 1 of 6) 11222 ENSMUSG00000003271.17 ENSMUSG00000003271 ENSMUST00000211779 Sult2b1 protein_coding Interval_159059 chr8 89180015 89180269 + 0 NA Intergenic Intergenic 7418 ENSMUSG00000069962.3 ENSMUSG00000069962 ENSMUST00000093326 Gm5356 processed_pseudogene Interval_167955 chr9 74931738 74932345 + 0 NA Intergenic Intergenic -20843 ENSMUSG00000034858.16 ENSMUSG00000034858 ENSMUST00000081746 Fam214a protein_coding Interval_90217 chr2 29085769 29086190 + 0 NA intron (ENSMUSG00000026803.17, intron 10 of 10) protein_coding-intron (ENSMUSG00000026803.17, intron 11 of 11) -2687 ENSMUSG00000086519.1 ENSMUSG00000086519 ENSMUST00000141935 Gm13393 lincRNA Interval_171207 chr9 115215847 115216967 + 0 NA intron (ENSMUSG00000040875.12, intron 7 of 11) protein_coding-intron (ENSMUSG00000040875.12, intron 5 of 9) 16009 ENSMUSG00000097967.1 ENSMUSG00000097967 ENSMUST00000182789 Gm27002 sense_intronic Interval_129027 chr5 116858484 116859147 + 0 NA Intergenic Intergenic -28295 ENSMUSG00000106909.1 ENSMUSG00000106909 ENSMUST00000201752 Gm43122 lincRNA Interval_135640 chr6 42245590 42247313 + 0 NA exon (ENSMUSG00000029864.7, exon 1 of 7) protein_coding-exon (ENSMUSG00000029864.7, exon 1 of 7) 428 ENSMUSG00000029864.7 ENSMUSG00000029864 ENSMUST00000204792 Gstk1 protein_coding Interval_119929 chr4 140986419 140987679 + 0 NA promoter-TSS (ENSMUSG00000036622.15) protein_coding-promoter-TSS (ENSMUSG00000036622.15) -13662 ENSMUSG00000036622.15 ENSMUSG00000036622 ENSMUST00000137630 Atp13a2 protein_coding Interval_159047 chr8 89046368 89047189 + 0 NA Intergenic Intergenic -2616 ENSMUSG00000031665.7 ENSMUSG00000031665 ENSMUST00000034090 Sall1 protein_coding Interval_126530 chr5 89683768 89684862 + 0 NA exon (ENSMUSG00000043635.12, exon 20 of 22) protein_coding-exon (ENSMUSG00000043635.12, exon 20 of 22) 2399 ENSMUSG00000084500.1 ENSMUSG00000084500 ENSMUST00000122551 Gm25320 misc_RNA Interval_25632 chr11 50305890 50306201 + 0 NA intron (ENSMUSG00000020368.15, intron 7 of 14) protein_coding-intron (ENSMUSG00000020368.15, intron 7 of 14) -14241 ENSMUSG00000050567.16 ENSMUSG00000050567 ENSMUST00000059458 Maml1 protein_coding Interval_123083 chr5 29477468 29479725 + 0 NA promoter-TSS (ENSMUSG00000001566.9) protein_coding-promoter-TSS (ENSMUSG00000001566.9) -126 ENSMUSG00000001566.9 ENSMUSG00000001566 ENSMUST00000001608 Mnx1 protein_coding Interval_56598 chr14 120719435 120719799 + 0 NA Intergenic Intergenic 6539 ENSMUSG00000115630.1 ENSMUSG00000115630 ENSMUST00000226406 Rpl19-ps5 processed_pseudogene Interval_83150 chr18 82234409 82235679 + 0 NA Intergenic Intergenic 23466 ENSMUSG00000117913.1 ENSMUSG00000117913 ENSMUST00000237813 Gm50294 lincRNA Interval_166359 chr9 58581642 58583142 + 0 NA promoter-TSS (ENSMUSG00000032336.17) protein_coding-promoter-TSS (ENSMUSG00000032336.17) 18 ENSMUSG00000032336.17 ENSMUSG00000032336 ENSMUST00000177020 Nptn protein_coding Interval_146533 chr7 46691527 46691976 + 0 NA TTS (ENSMUSG00000006763.14) protein_coding-TTS (ENSMUSG00000006763.14) -6368 ENSMUSG00000110010.1 ENSMUSG00000110010 ENSMUST00000209629 Gm45629 TEC Interval_2390 chr1 38904128 38904561 + 0 NA Intergenic Intergenic -3601 ENSMUSG00000102447.1 ENSMUSG00000102447 ENSMUST00000193251 Gm6621 processed_pseudogene Interval_82660 chr18 75720015 75720423 + 0 NA Intergenic Intergenic -46924 ENSMUSG00000118164.1 ENSMUSG00000118164 ENSMUST00000237826 Gm20570 processed_pseudogene Interval_48947 chr13 105422333 105422552 + 0 NA Intergenic Intergenic -21197 ENSMUSG00000021721.5 ENSMUSG00000021721 ENSMUST00000022235 Htr1a protein_coding Interval_25533 chr11 49625308 49625495 + 0 NA exon (ENSMUSG00000020357.3, exon 3 of 30) protein_coding-exon (ENSMUSG00000020357.3, exon 3 of 30) 16138 ENSMUSG00000020357.3 ENSMUSG00000020357 ENSMUST00000020617 Flt4 protein_coding Interval_126784 chr5 92915690 92915908 + 0 NA intron (ENSMUSG00000029381.16, intron 1 of 9) protein_coding-intron (ENSMUSG00000029381.16, intron 1 of 9) 59328 ENSMUSG00000029381.16 ENSMUSG00000029381 ENSMUST00000172752 Shroom3 protein_coding Interval_53046 chr14 53831064 53831814 + 0 NA intron (ENSMUSG00000076861.10, intron 1 of 1) TR_V_gene-intron (ENSMUSG00000076861.10, intron 1 of 1) 334 ENSMUSG00000076861.10 ENSMUSG00000076861 ENSMUST00000186573 Trav18 TR_V_gene Interval_93891 chr2 78094843 78096696 + 0 NA intron (ENSMUSG00000085431.7, intron 2 of 6) lincRNA-intron (ENSMUSG00000085431.7, intron 2 of 6) 44592 ENSMUSG00000085431.7 ENSMUSG00000085431 ENSMUST00000144728 4930440I19Rik lincRNA Interval_171315 chr9 116312982 116314651 + 0 NA Intergenic Intergenic -17352 ENSMUSG00000110752.1 ENSMUSG00000110752 ENSMUST00000217456 D730003K21Rik lincRNA Interval_62772 chr15 96768115 96769317 + 0 NA Intergenic Intergenic -1638 ENSMUSG00000095638.2 ENSMUSG00000095638 ENSMUST00000177677 Gm8888 processed_pseudogene Interval_25072 chr11 43652566 43653802 + 0 NA Intergenic Intergenic -17617 ENSMUSG00000083662.1 ENSMUSG00000083662 ENSMUST00000122465 Gm12152 processed_pseudogene Interval_152701 chr7 136584287 136584811 + 0 NA Intergenic Intergenic -72660 ENSMUSG00000109894.1 ENSMUSG00000109894 ENSMUST00000210286 Gm5904 processed_pseudogene Interval_96580 chr2 125891589 125892044 + 0 NA intron (ENSMUSG00000027207.15, intron 3 of 5) protein_coding-intron (ENSMUSG00000027207.15, intron 3 of 9) 25573 ENSMUSG00000027207.15 ENSMUSG00000027207 ENSMUST00000110454 Galk2 protein_coding Interval_28020 chr11 72277077 72279503 + 0 NA Intergenic Intergenic -2726 ENSMUSG00000084599.1 ENSMUSG00000084599 ENSMUST00000122650 n-R5s70 rRNA Interval_75923 chr17 73093155 73093432 + 0 NA Intergenic Intergenic -33134 ENSMUSG00000054469.14 ENSMUSG00000054469 ENSMUST00000134149 Lclat1 protein_coding Interval_106936 chr3 102053085 102053534 + 0 NA Intergenic Intergenic -14741 ENSMUSG00000104930.1 ENSMUSG00000104930 ENSMUST00000199964 Gm43243 processed_pseudogene Interval_174391 chrX 151088511 151090505 + 0 NA TTS (ENSMUSG00000025265.14) protein_coding-TTS (ENSMUSG00000025265.14) 3398 ENSMUSG00000025265.14 ENSMUSG00000025265 ENSMUST00000125620 Fgd1 protein_coding Interval_45118 chr13 52476364 52477181 + 0 NA Intergenic Intergenic 54507 ENSMUSG00000047842.7 ENSMUSG00000047842 ENSMUST00000057442 Diras2 protein_coding Interval_166237 chr9 57695988 57697590 + 0 NA promoter-TSS (ENSMUSG00000032315.6) protein_coding-promoter-TSS (ENSMUSG00000032315.6) 8861 ENSMUSG00000032315.6 ENSMUSG00000032315 ENSMUST00000034865 Cyp1a1 protein_coding Interval_135224 chr6 37649178 37649556 + 0 NA Intergenic Intergenic 37828 ENSMUSG00000107035.1 ENSMUSG00000107035 ENSMUST00000201305 Ybx1-ps2 processed_pseudogene Interval_25841 chr11 52076503 52076974 + 0 NA intron (ENSMUSG00000020389.19, intron 5 of 5) protein_coding-intron (ENSMUSG00000020389.19, intron 13 of 13) 22415 ENSMUSG00000093006.2 ENSMUSG00000093006 ENSMUST00000175265 Gm24157 miRNA Interval_1019 chr1 14137884 14138201 + 0 NA Intergenic Intergenic -25223 ENSMUSG00000104209.1 ENSMUSG00000104209 ENSMUST00000193148 Gm37400 TEC Interval_146758 chr7 49981454 49982396 + 0 NA intron (ENSMUSG00000055409.14, intron 1 of 9) protein_coding-intron (ENSMUSG00000055409.14, intron 1 of 19) 71626 ENSMUSG00000039728.15 ENSMUSG00000039728 ENSMUST00000107605 Slc6a5 protein_coding Interval_152835 chr7 138563790 138564390 + 0 NA intron (ENSMUSG00000110037.1, intron 4 of 4) lincRNA-intron (ENSMUSG00000110037.1, intron 2 of 2) 9848 ENSMUSG00000110037.1 ENSMUSG00000110037 ENSMUST00000209503 4930543N07Rik lincRNA Interval_33153 chr11 114795176 114796155 + 0 NA intron (ENSMUSG00000000202.9, intron 1 of 2) protein_coding-intron (ENSMUSG00000000202.9, intron 1 of 2) 245 ENSMUSG00000000202.9 ENSMUSG00000000202 ENSMUST00000137965 Btbd17 protein_coding Interval_31042 chr11 97833652 97834206 + 0 NA TTS (ENSMUSG00000038366.15) protein_coding-TTS (ENSMUSG00000038366.15) -7390 ENSMUSG00000050538.8 ENSMUSG00000050538 ENSMUST00000170806 B230217C12Rik protein_coding Interval_95286 chr2 105674688 105678039 + 0 NA TTS (ENSMUSG00000027168.21) protein_coding-TTS (ENSMUSG00000027168.21) 1254 ENSMUSG00000027168.21 ENSMUSG00000027168 ENSMUST00000147946 Pax6 protein_coding Interval_31630 chr11 101881160 101883119 + 0 NA intron (ENSMUSG00000001493.9, intron 1 of 2) protein_coding-intron (ENSMUSG00000001493.9, intron 1 of 2) -4098 ENSMUSG00000085594.1 ENSMUSG00000085594 ENSMUST00000147438 Gm11551 antisense Interval_123120 chr5 29810861 29812412 + 0 NA intron (ENSMUSG00000029131.14, intron 8 of 8) protein_coding-intron (ENSMUSG00000029131.14, intron 8 of 8) -3478 ENSMUSG00000105999.1 ENSMUSG00000105999 ENSMUST00000197485 Gm2213 processed_pseudogene Interval_56491 chr14 119137304 119139181 + 0 NA promoter-TSS (ENSMUSG00000053465.6) protein_coding-promoter-TSS (ENSMUSG00000053465.6) -99 ENSMUSG00000053465.6 ENSMUSG00000053465 ENSMUST00000065904 Hs6st3 protein_coding Interval_67988 chr16 62786154 62787566 + 0 NA promoter-TSS (ENSMUSG00000050312.12) protein_coding-promoter-TSS (ENSMUSG00000050312.12) -94 ENSMUSG00000050312.12 ENSMUSG00000050312 ENSMUST00000231289 Nsun3 protein_coding Interval_110802 chr4 8535260 8536540 + 0 NA exon (ENSMUSG00000047187.9, exon 1 of 8) protein_coding-exon (ENSMUSG00000047187.9, exon 1 of 8) 256 ENSMUSG00000047187.9 ENSMUSG00000047187 ENSMUST00000060232 Rab2a protein_coding Interval_73014 chr17 34139329 34139885 + 0 NA TTS (ENSMUSG00000037649.10) protein_coding-TTS (ENSMUSG00000037649.10) -3700 ENSMUSG00000037548.15 ENSMUSG00000037548 ENSMUST00000171231 H2-DMb2 protein_coding Interval_143884 chr7 16915714 16916072 + 0 NA TTS (ENSMUSG00000019370.10) protein_coding-TTS (ENSMUSG00000019370.10) 7936 ENSMUSG00000019370.10 ENSMUSG00000019370 ENSMUST00000173557 Calm3 protein_coding Interval_14321 chr10 30825262 30825800 + 0 NA Intergenic Intergenic 16484 ENSMUSG00000019789.9 ENSMUSG00000019789 ENSMUST00000217504 Hey2 protein_coding Interval_49847 chr13 117061530 117061843 + 0 NA Intergenic Intergenic 10952 ENSMUSG00000114609.1 ENSMUSG00000114609 ENSMUST00000224367 Gm29767 processed_pseudogene Interval_151753 chr7 126435624 126437439 + 0 NA TTS (ENSMUSG00000030727.12) protein_coding-TTS (ENSMUSG00000030727.12) 7772 ENSMUSG00000030727.12 ENSMUSG00000030727 ENSMUST00000133300 Rabep2 protein_coding Interval_115171 chr4 93184159 93184586 + 0 NA Intergenic Intergenic 77384 ENSMUSG00000082919.1 ENSMUSG00000082919 ENSMUST00000117874 Gm12641 processed_pseudogene Interval_33077 chr11 114217065 114218338 + 0 NA Intergenic Intergenic 19443 ENSMUSG00000078600.1 ENSMUSG00000078600 ENSMUST00000106604 1700092K14Rik processed_transcript Interval_115910 chr4 106206146 106206972 + 0 NA Intergenic Intergenic -34657 ENSMUSG00000086249.1 ENSMUSG00000086249 ENSMUST00000140196 Gm12724 processed_transcript Interval_122622 chr5 24301202 24301572 + 0 NA Intergenic Intergenic 25132 ENSMUSG00000038319.14 ENSMUSG00000038319 ENSMUST00000142197 Kcnh2 protein_coding Interval_89020 chr2 14627181 14627398 + 0 NA promoter-TSS (ENSMUSG00000070271.7) processed_pseudogene-promoter-TSS (ENSMUSG00000070271.7) 32 ENSMUSG00000070271.7 ENSMUSG00000070271 ENSMUST00000117485 Gm13268 processed_pseudogene Interval_58946 chr15 40447540 40448132 + 0 NA Intergenic Intergenic 79441 ENSMUSG00000056332.4 ENSMUSG00000056332 ENSMUST00000070382 Gm16294 lincRNA Interval_148157 chr7 79534471 79536617 + 0 NA promoter-TSS (ENSMUSG00000108616.1) lincRNA-promoter-TSS (ENSMUSG00000108616.1) -499 ENSMUSG00000108616.1 ENSMUSG00000108616 ENSMUST00000206829 Gm35040 lincRNA Interval_131385 chr5 136840120 136840481 + 0 NA intron (ENSMUSG00000004415.15, intron 2 of 4) protein_coding-intron (ENSMUSG00000004415.15, intron 2 of 12) -1991 ENSMUSG00000004415.15 ENSMUSG00000004415 ENSMUST00000140245 Col26a1 protein_coding Interval_93975 chr2 80405356 80405634 + 0 NA Intergenic Intergenic 10598 ENSMUSG00000085921.1 ENSMUSG00000085921 ENSMUST00000138195 Gm13752 antisense Interval_78311 chr18 11899404 11900567 + 0 NA intron (ENSMUSG00000040957.15, intron 3 of 8) protein_coding-intron (ENSMUSG00000040957.15, intron 3 of 8) -13146 ENSMUSG00000117430.1 ENSMUSG00000117430 ENSMUST00000234828 Gm49968 TEC Interval_147249 chr7 65063814 65066672 + 0 NA intron (ENSMUSG00000030518.17, intron 1 of 3) protein_coding-intron (ENSMUSG00000030518.17, intron 1 of 9) -105399 ENSMUSG00000108745.1 ENSMUSG00000108745 ENSMUST00000205552 Gm17908 processed_pseudogene Interval_1178 chr1 16640690 16641243 + 0 NA TTS (ENSMUSG00000079658.9) protein_coding-TTS (ENSMUSG00000079658.9) 16076 ENSMUSG00000079658.9 ENSMUSG00000079658 ENSMUST00000191535 Eloc protein_coding Interval_1640 chr1 30698736 30699037 + 0 NA Intergenic Intergenic 21076 ENSMUSG00000053185.2 ENSMUSG00000053185 ENSMUST00000065469 Gm9898 lincRNA Interval_41218 chr12 111877847 111878656 + 0 NA intron (ENSMUSG00000021285.15, intron 1 of 3) protein_coding-intron (ENSMUSG00000021285.15, intron 1 of 16) -17115 ENSMUSG00000113357.1 ENSMUSG00000113357 ENSMUST00000222018 Gm19195 processed_pseudogene Interval_7702 chr1 133161782 133162119 + 0 NA Intergenic Intergenic -30168 ENSMUSG00000102425.1 ENSMUSG00000102425 ENSMUST00000193049 Gm26616 TEC Interval_129751 chr5 122116195 122116932 + 0 NA intron (ENSMUSG00000043036.13, intron 9 of 12) protein_coding-intron (ENSMUSG00000043036.13, intron 9 of 12) -5450 ENSMUSG00000043036.13 ENSMUSG00000043036 ENSMUST00000196608 Ccdc63 protein_coding Interval_156409 chr8 47964844 47965213 + 0 NA intron (ENSMUSG00000031563.8, intron 1 of 22) protein_coding-intron (ENSMUSG00000031563.8, intron 1 of 22) 25896 ENSMUSG00000031563.8 ENSMUSG00000031563 ENSMUST00000212282 Wwc2 protein_coding Interval_161221 chr8 118794742 118797319 + 0 NA intron (ENSMUSG00000031841.19, intron 6 of 8) protein_coding-intron (ENSMUSG00000031841.19, intron 4 of 13) 69130 ENSMUSG00000087707.1 ENSMUSG00000087707 ENSMUST00000157082 Gm22999 snoRNA Interval_57219 chr15 7890096 7890338 + 0 NA intron (ENSMUSG00000039828.7, intron 13 of 17) protein_coding-intron (ENSMUSG00000039828.7, intron 13 of 17) 79371 ENSMUSG00000022144.4 ENSMUSG00000022144 ENSMUST00000022744 Gdnf protein_coding Interval_123639 chr5 34168973 34169977 + 0 NA promoter-TSS (ENSMUSG00000045102.12) protein_coding-promoter-TSS (ENSMUSG00000045102.12) -42 ENSMUSG00000079555.2 ENSMUSG00000079555 ENSMUST00000202541 Haus3 protein_coding Interval_146407 chr7 45730621 45731664 + 0 NA intron (ENSMUSG00000003271.17, intron 5 of 5) protein_coding-intron (ENSMUSG00000003271.17, intron 6 of 6) 5283 ENSMUSG00000054161.12 ENSMUSG00000054161 ENSMUST00000211124 Fam83e protein_coding Interval_26801 chr11 60707640 60707877 + 0 NA intron (ENSMUSG00000020536.12, intron 11 of 20) protein_coding-intron (ENSMUSG00000020536.12, intron 11 of 21) 3561 ENSMUSG00000020536.12 ENSMUSG00000020536 ENSMUST00000128749 Llgl1 protein_coding Interval_90939 chr2 33600290 33601425 + 0 NA intron (ENSMUSG00000038765.14, intron 2 of 7) protein_coding-intron (ENSMUSG00000038765.14, intron 2 of 7) -13541 ENSMUSG00000104403.1 ENSMUSG00000104403 ENSMUST00000193312 Gm38011 TEC Interval_67588 chr16 51642681 51643380 + 0 NA Intergenic Intergenic -226082 ENSMUSG00000116855.1 ENSMUSG00000116855 ENSMUST00000232313 Gm49608 processed_pseudogene Interval_49101 chr13 108033151 108033755 + 0 NA intron (ENSMUSG00000068184.7, intron 1 of 3) protein_coding-intron (ENSMUSG00000068184.7, intron 1 of 3) -11033 ENSMUSG00000071180.5 ENSMUSG00000071180 ENSMUST00000224390 Smim15 protein_coding Interval_119716 chr4 139429759 139431082 + 0 NA intron (ENSMUSG00000066036.14, intron 48 of 105) protein_coding-intron (ENSMUSG00000066036.14, intron 48 of 105) 49761 ENSMUSG00000066036.14 ENSMUSG00000066036 ENSMUST00000135534 Ubr4 protein_coding Interval_22230 chr11 7401705 7401952 + 0 NA Intergenic Intergenic -111454 ENSMUSG00000087637.1 ENSMUSG00000087637 ENSMUST00000149481 Gm11986 lincRNA Interval_84380 chr19 10497811 10498285 + 0 NA Intergenic Intergenic -15120 ENSMUSG00000035179.4 ENSMUSG00000035179 ENSMUST00000236733 Ppp1r32 protein_coding Interval_53498 chr14 57861375 57863094 + 0 NA intron (ENSMUSG00000021969.8, intron 4 of 13) protein_coding-intron (ENSMUSG00000021969.8, intron 4 of 12) 27988 ENSMUSG00000021969.8 ENSMUSG00000021969 ENSMUST00000225955 Zdhhc20 protein_coding Interval_137209 chr6 70087966 70088887 + 0 NA Intergenic Intergenic -13823 ENSMUSG00000076576.2 ENSMUSG00000076576 ENSMUST00000103377 Igkv6-32 IG_V_gene Interval_9262 chr1 155617906 155618156 + 0 NA intron (ENSMUSG00000033701.13, intron 5 of 7) protein_coding-intron (ENSMUSG00000033701.13, intron 5 of 7) 54914 ENSMUSG00000033701.13 ENSMUSG00000033701 ENSMUST00000192730 Acbd6 protein_coding Interval_78084 chr18 7823827 7825422 + 0 NA Intergenic Intergenic -10553 ENSMUSG00000064822.1 ENSMUSG00000064822 ENSMUST00000082888 Gm24292 snRNA Interval_77235 chr17 87511644 87512700 + 0 NA Intergenic Intergenic 18572 ENSMUSG00000117361.1 ENSMUSG00000117361 ENSMUST00000234692 Gm30984 lincRNA Interval_3110 chr1 53525766 53526495 + 0 NA intron (ENSMUSG00000096141.2, intron 36 of 65) protein_coding-intron (ENSMUSG00000096141.2, intron 36 of 65) -82735 ENSMUSG00000092657.1 ENSMUSG00000092657 ENSMUST00000174916 Gm25240 miRNA Interval_31216 chr11 98952832 98955590 + 0 NA intron (ENSMUSG00000037992.16, intron 2 of 8) protein_coding-intron (ENSMUSG00000037992.16, intron 3 of 9) 7767 ENSMUSG00000064491.1 ENSMUSG00000064491 ENSMUST00000082557 Gm22061 snRNA Interval_108674 chr3 130004594 130005692 + 0 NA intron (ENSMUSG00000001052.15, intron 5 of 16) protein_coding-intron (ENSMUSG00000001052.15, intron 7 of 23) -14646 ENSMUSG00000001052.15 ENSMUSG00000001052 ENSMUST00000168675 Sec24b protein_coding Interval_32369 chr11 107182370 107182698 + 0 NA intron (ENSMUSG00000018433.14, intron 1 of 4) protein_coding-intron (ENSMUSG00000018433.14, intron 5 of 17) 6818 ENSMUSG00000018433.14 ENSMUSG00000018433 ENSMUST00000139168 Nol11 protein_coding Interval_141689 chr6 133468643 133468850 + 0 NA Intergenic Intergenic -60476 ENSMUSG00000095412.3 ENSMUSG00000095412 ENSMUST00000203357 Gm5885 transcribed_unprocessed_pseudogene Interval_94745 chr2 93943701 93945017 + 0 NA Intergenic Intergenic -3481 ENSMUSG00000083009.1 ENSMUSG00000083009 ENSMUST00000121653 Gm1335 processed_pseudogene Interval_5532 chr1 89612359 89613249 + 0 NA intron (ENSMUSG00000055013.16, intron 4 of 17) protein_coding-intron (ENSMUSG00000055013.16, intron 3 of 17) 44039 ENSMUSG00000101662.1 ENSMUSG00000101662 ENSMUST00000191576 Gm28499 sense_intronic Interval_70468 chr17 10408560 10409194 + 0 NA intron (ENSMUSG00000037196.6, intron 4 of 4) protein_coding-intron (ENSMUSG00000037196.6, intron 4 of 4) -47339 ENSMUSG00000089633.2 ENSMUSG00000089633 ENSMUST00000160738 A230009B12Rik antisense Interval_61161 chr15 79581459 79581883 + 0 NA intron (ENSMUSG00000022429.11, intron 2 of 3) protein_coding-intron (ENSMUSG00000022429.11, intron 12 of 13) 3579 ENSMUSG00000022429.11 ENSMUSG00000022429 ENSMUST00000230121 Dmc1 protein_coding Interval_155501 chr8 33947737 33948411 + 0 NA Intergenic Intergenic -18682 ENSMUSG00000031586.17 ENSMUSG00000031586 ENSMUST00000231942 Rbpms protein_coding Interval_63210 chr15 99749218 99749693 + 0 NA intron (ENSMUSG00000023021.15, intron 2 of 3) protein_coding-intron (ENSMUSG00000023021.15, intron 2 of 9) -2385 ENSMUSG00000023021.15 ENSMUSG00000023021 ENSMUST00000176627 Cers5 protein_coding Interval_149757 chr7 101301457 101302631 + 0 NA promoter-TSS (ENSMUSG00000047767.17) protein_coding-promoter-TSS (ENSMUSG00000047767.17) 5 ENSMUSG00000047767.17 ENSMUSG00000047767 ENSMUST00000209093 Atg16l2 protein_coding Interval_49375 chr13 111544116 111544325 + 0 NA intron (ENSMUSG00000085634.2, intron 1 of 1) lincRNA-intron (ENSMUSG00000085634.2, intron 1 of 1) 5691 ENSMUSG00000085634.2 ENSMUSG00000085634 ENSMUST00000132880 Gm15290 lincRNA Interval_48085 chr13 95890097 95892973 + 0 NA intron (ENSMUSG00000021676.10, intron 1 of 6) protein_coding-intron (ENSMUSG00000021676.10, intron 1 of 35) 5585 ENSMUSG00000065866.1 ENSMUSG00000065866 ENSMUST00000083932 Gm24032 snRNA Interval_70902 chr17 15740155 15740404 + 0 NA intron (ENSMUSG00000023852.14, intron 2 of 10) protein_coding-intron (ENSMUSG00000023852.14, intron 15 of 35) 1744 ENSMUSG00000023852.14 ENSMUSG00000023852 ENSMUST00000173040 Chd1 protein_coding Interval_109791 chr3 147117120 147117309 + 0 NA intron (ENSMUSG00000103334.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000103334.1, intron 1 of 1) 21030 ENSMUSG00000103334.1 ENSMUSG00000103334 ENSMUST00000193142 Gm29771 lincRNA Interval_144469 chr7 25333514 25334300 + 0 NA exon (ENSMUSG00000045039.9, exon 9 of 41) protein_coding-exon (ENSMUSG00000045039.9, exon 9 of 41) -12074 ENSMUSG00000045039.9 ENSMUSG00000045039 ENSMUST00000153077 Megf8 protein_coding Interval_117513 chr4 124316777 124317730 + 0 NA Intergenic Intergenic -5792 ENSMUSG00000086955.1 ENSMUSG00000086955 ENSMUST00000153719 1700021L23Rik lincRNA Interval_125308 chr5 66101515 66101794 + 0 NA intron (ENSMUSG00000070780.11, intron 1 of 2) protein_coding-intron (ENSMUSG00000070780.11, intron 1 of 5) -17188 ENSMUSG00000107390.1 ENSMUSG00000107390 ENSMUST00000202328 Gm43323 TEC Interval_14653 chr10 38034282 38034708 + 0 NA Intergenic Intergenic 87566 ENSMUSG00000111488.1 ENSMUSG00000111488 ENSMUST00000213538 Gm31378 lincRNA Interval_26178 chr11 54921594 54922985 + 0 NA intron (ENSMUSG00000020400.17, intron 11 of 17) protein_coding-intron (ENSMUSG00000020400.17, intron 11 of 17) 19363 ENSMUSG00000018339.11 ENSMUSG00000018339 ENSMUST00000149324 Gpx3 protein_coding Interval_152658 chr7 135792997 135793507 + 0 NA intron (ENSMUSG00000109831.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000109831.1, intron 1 of 2) 50576 ENSMUSG00000109831.1 ENSMUSG00000109831 ENSMUST00000209706 Gm36431 lincRNA Interval_113065 chr4 47419406 47420892 + 0 NA Intergenic Intergenic -33483 ENSMUSG00000081152.1 ENSMUSG00000081152 ENSMUST00000121539 Gm12430 processed_pseudogene Interval_14511 chr10 34537018 34537244 + 0 NA intron (ENSMUSG00000019779.15, intron 1 of 5) protein_coding-intron (ENSMUSG00000019779.15, intron 2 of 8) 53599 ENSMUSG00000019779.15 ENSMUSG00000019779 ENSMUST00000215594 Frk protein_coding Interval_14992 chr10 41757180 41757599 + 0 NA intron (ENSMUSG00000102114.2, intron 1 of 3) protein_coding-intron (ENSMUSG00000019813.16, intron 1 of 10) 10668 ENSMUSG00000102114.2 ENSMUSG00000102114 ENSMUST00000190793 BC048559 antisense Interval_170451 chr9 108065554 108066174 + 0 NA intron (ENSMUSG00000041528.15, intron 20 of 38) protein_coding-intron (ENSMUSG00000041528.15, intron 20 of 38) 12705 ENSMUSG00000032593.5 ENSMUSG00000032593 ENSMUST00000085060 Amigo3 protein_coding Interval_49489 chr13 112407524 112407779 + 0 NA Intergenic Intergenic 9714 ENSMUSG00000114656.1 ENSMUSG00000114656 ENSMUST00000224082 2810403G07Rik lincRNA Interval_92955 chr2 68934748 68934920 + 0 NA TTS (ENSMUSG00000027035.10) protein_coding-TTS (ENSMUSG00000027035.10) -27383 ENSMUSG00000103734.1 ENSMUSG00000103734 ENSMUST00000194679 Gm37651 TEC Interval_17065 chr10 70976078 70976705 + 0 NA exon (ENSMUSG00000112745.1, exon 2 of 2) sense_intronic-exon (ENSMUSG00000112745.1, exon 2 of 2) 16649 ENSMUSG00000112745.1 ENSMUSG00000112745 ENSMUST00000219321 Gm48025 sense_intronic Interval_93780 chr2 76821885 76822149 + 0 NA TTS (ENSMUSG00000051747.15) protein_coding-TTS (ENSMUSG00000051747.15) 14797 ENSMUSG00000051747.15 ENSMUSG00000051747 ENSMUST00000147048 Ttn protein_coding Interval_119283 chr4 136645795 136646147 + 0 NA Intergenic Intergenic 6389 ENSMUSG00000103119.1 ENSMUSG00000103119 ENSMUST00000195460 Gm37583 TEC Interval_101 GL456221.1 142218 142568 + 0 NA NA NA NA NA Interval_171179 chr9 115002492 115003661 + 0 NA intron (ENSMUSG00000040875.12, intron 1 of 4) protein_coding-intron (ENSMUSG00000040875.12, intron 1 of 11) 4460 ENSMUSG00000040875.12 ENSMUSG00000040875 ENSMUST00000182413 Osbpl10 protein_coding Interval_25994 chr11 53372098 53373140 + 0 NA promoter-TSS (ENSMUSG00000049470.13) protein_coding-promoter-TSS (ENSMUSG00000049470.13) -17783 ENSMUSG00000064719.1 ENSMUSG00000064719 ENSMUST00000082785 Gm25930 snRNA Interval_109671 chr3 145896439 145897001 + 0 NA Intergenic Intergenic 17700 ENSMUSG00000105388.1 ENSMUSG00000105388 ENSMUST00000197973 Rpl36a-ps2 processed_pseudogene Interval_152053 chr7 128592533 128592831 + 0 NA intron (ENSMUSG00000108795.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000108795.1, intron 1 of 1) 661 ENSMUSG00000108795.1 ENSMUSG00000108795 ENSMUST00000205396 Gm45121 lincRNA Interval_67747 chr16 56819750 56820047 + 0 NA intron (ENSMUSG00000022754.6, intron 4 of 5) protein_coding-intron (ENSMUSG00000022754.6, intron 4 of 5) -24043 ENSMUSG00000022755.4 ENSMUSG00000022755 ENSMUST00000023437 Adgrg7 protein_coding Interval_25839 chr11 52065792 52065995 + 0 NA intron (ENSMUSG00000020389.19, intron 5 of 5) protein_coding-intron (ENSMUSG00000020389.19, intron 13 of 13) -26422 ENSMUSG00000084800.1 ENSMUSG00000084800 ENSMUST00000133940 Gm12205 antisense Interval_146925 chr7 55923074 55924375 + 0 NA intron (ENSMUSG00000030447.15, intron 23 of 23) protein_coding-intron (ENSMUSG00000030447.15, intron 25 of 30) 5184 ENSMUSG00000108701.1 ENSMUSG00000108701 ENSMUST00000206417 Gm44616 TEC Interval_78594 chr18 15008183 15008626 + 0 NA intron (ENSMUSG00000036225.15, intron 1 of 4) protein_coding-intron (ENSMUSG00000036225.15, intron 1 of 4) -2842 ENSMUSG00000071867.5 ENSMUSG00000071867 ENSMUST00000096579 Mrpl27-ps processed_pseudogene Interval_7274 chr1 128368758 128370041 + 0 NA intron (ENSMUSG00000026356.15, intron 12 of 15) protein_coding-intron (ENSMUSG00000026356.15, intron 12 of 15) 10088 ENSMUSG00000026356.15 ENSMUSG00000026356 ENSMUST00000064309 Dars protein_coding Interval_29821 chr11 87035990 87036474 + 0 NA intron (ENSMUSG00000061666.6, intron 8 of 9) protein_coding-intron (ENSMUSG00000061666.6, intron 8 of 9) 37830 ENSMUSG00000061666.6 ENSMUSG00000061666 ENSMUST00000020804 Gdpd1 protein_coding Interval_9376 chr1 156654899 156655520 + 0 NA TTS (ENSMUSG00000060519.11) protein_coding-TTS (ENSMUSG00000060519.11) 19126 ENSMUSG00000060519.11 ENSMUSG00000060519 ENSMUST00000190607 Tor3a protein_coding Interval_106533 chr3 97048269 97048533 + 0 NA intron (ENSMUSG00000104766.1, intron 3 of 3) protein_coding-intron (ENSMUSG00000057123.14, intron 1 of 1) 44384 ENSMUSG00000104766.1 ENSMUSG00000104766 ENSMUST00000197696 4930573H18Rik antisense Interval_31401 chr11 100460247 100460874 + 0 NA Intergenic Intergenic 12181 ENSMUSG00000048732.5 ENSMUSG00000048732 ENSMUST00000056665 Klhl11 protein_coding Interval_35770 chr12 29143516 29143944 + 0 NA intron (ENSMUSG00000113986.1, intron 1 of 3) lincRNA-intron (ENSMUSG00000113986.1, intron 2 of 7) 1801 ENSMUSG00000113986.1 ENSMUSG00000113986 ENSMUST00000222225 Gm31333 lincRNA Interval_2843 chr1 46255331 46255970 + 0 NA intron (ENSMUSG00000041144.12, intron 47 of 64) protein_coding-intron (ENSMUSG00000041144.12, intron 48 of 65) -118547 ENSMUSG00000096047.1 ENSMUSG00000096047 ENSMUST00000093689 n-R5s211 rRNA Interval_87139 chr19 46406005 46406363 + 0 NA intron (ENSMUSG00000025231.17, intron 1 of 5) protein_coding-intron (ENSMUSG00000025231.17, intron 2 of 11) 5060 ENSMUSG00000025231.17 ENSMUSG00000025231 ENSMUST00000144341 Sufu protein_coding Interval_117416 chr4 123587813 123589742 + 0 NA intron (ENSMUSG00000028649.21, intron 1 of 97) protein_coding-intron (ENSMUSG00000028649.21, intron 1 of 92) 24966 ENSMUSG00000028649.21 ENSMUSG00000028649 ENSMUST00000146000 Macf1 protein_coding Interval_38014 chr12 73964164 73965419 + 0 NA intron (ENSMUSG00000021113.5, intron 1 of 9) protein_coding-intron (ENSMUSG00000021113.5, intron 1 of 9) 310 ENSMUSG00000021113.5 ENSMUSG00000021113 ENSMUST00000220909 Snapc1 protein_coding Interval_132125 chr5 142854646 142855215 + 0 NA Intergenic Intergenic -1731 ENSMUSG00000082308.1 ENSMUSG00000082308 ENSMUST00000117498 Gm15770 processed_pseudogene Interval_74200 chr17 47092251 47092568 + 0 NA Intergenic Intergenic -48807 ENSMUSG00000064043.13 ENSMUSG00000064043 ENSMUST00000190020 Trerf1 processed_transcript Interval_135268 chr6 37945748 37946061 + 0 NA exon (ENSMUSG00000029833.17, exon 8 of 8) protein_coding-exon (ENSMUSG00000029833.17, exon 8 of 8) 72707 ENSMUSG00000029830.15 ENSMUSG00000029830 ENSMUST00000040486 Svopl protein_coding Interval_156267 chr8 46643134 46643368 + 0 NA Intergenic Intergenic 25960 ENSMUSG00000031628.9 ENSMUSG00000031628 ENSMUST00000210534 Casp3 protein_coding Interval_1288 chr1 19211914 19213215 + 0 NA intron (ENSMUSG00000025927.13, intron 1 of 1) protein_coding-intron (ENSMUSG00000025927.13, intron 1 of 6) 258 ENSMUSG00000025927.13 ENSMUSG00000025927 ENSMUST00000186972 Tfap2b protein_coding Interval_69840 chr16 97356183 97357745 + 0 NA exon (ENSMUSG00000040605.7, exon 1 of 9) protein_coding-exon (ENSMUSG00000040605.7, exon 1 of 9) -48305 ENSMUSG00000116686.1 ENSMUSG00000116686 ENSMUST00000232315 Gm49681 processed_pseudogene Interval_168588 chr9 83920668 83920877 + 0 NA TTS (ENSMUSG00000111769.1) lincRNA-TTS (ENSMUSG00000111769.1) 4250 ENSMUSG00000111769.1 ENSMUSG00000111769 ENSMUST00000217030 Gm36278 lincRNA Interval_36068 chr12 34997842 34998262 + 0 NA Intergenic Intergenic 2505 ENSMUSG00000089043.1 ENSMUSG00000089043 ENSMUST00000158418 Gm24359 misc_RNA Interval_8192 chr1 136404257 136404631 + 0 NA Intergenic Intergenic 11050 ENSMUSG00000097403.2 ENSMUSG00000097403 ENSMUST00000194227 9230116N13Rik processed_transcript Interval_11244 chr1 180420989 180422883 + 0 NA exon (ENSMUSG00000038855.10, exon 8 of 8) protein_coding-exon (ENSMUSG00000038855.10, exon 8 of 8) 43945 ENSMUSG00000053963.7 ENSMUSG00000053963 ENSMUST00000211782 Stum protein_coding Interval_29169 chr11 80962314 80962832 + 0 NA intron (ENSMUSG00000020704.13, intron 2 of 9) protein_coding-intron (ENSMUSG00000020704.13, intron 2 of 9) -84221 ENSMUSG00000082027.1 ENSMUSG00000082027 ENSMUST00000119111 Gm11416 processed_pseudogene Interval_65943 chr16 30418410 30420216 + 0 NA Intergenic Intergenic -33275 ENSMUSG00000116960.1 ENSMUSG00000116960 ENSMUST00000231864 Gm49679 processed_pseudogene Interval_23439 chr11 22627862 22630275 + 0 NA Intergenic Intergenic -2404 ENSMUSG00000083008.1 ENSMUSG00000083008 ENSMUST00000119022 Gm12053 processed_pseudogene Interval_34065 chr11 120279840 120280769 + 0 NA intron (ENSMUSG00000039741.15, intron 14 of 27) protein_coding-intron (ENSMUSG00000039741.15, intron 14 of 27) 5817 ENSMUSG00000104657.1 ENSMUSG00000104657 ENSMUST00000197891 Gm47297 miRNA Interval_36871 chr12 54836412 54836645 + 0 NA Intergenic Intergenic -26119 ENSMUSG00000113209.1 ENSMUSG00000113209 ENSMUST00000220682 1700081N11Rik bidirectional_promoter_lncRNA Interval_53191 chr14 55025714 55025925 + 0 NA Intergenic Intergenic 4930 ENSMUSG00000022204.9 ENSMUSG00000022204 ENSMUST00000226258 Ngdn protein_coding Interval_13228 chr10 13257636 13258013 + 0 NA intron (ENSMUSG00000062866.16, intron 4 of 12) protein_coding-intron (ENSMUSG00000062866.16, intron 4 of 12) 52598 ENSMUSG00000112042.1 ENSMUSG00000112042 ENSMUST00000219030 Gm47402 processed_pseudogene Interval_120175 chr4 143192092 143192288 + 0 NA intron (ENSMUSG00000057637.13, intron 2 of 3) protein_coding-intron (ENSMUSG00000057637.13, intron 2 of 9) -11875 ENSMUSG00000087903.1 ENSMUSG00000087903 ENSMUST00000157278 Gm22039 snoRNA Interval_86309 chr19 38558565 38559236 + 0 NA intron (ENSMUSG00000024998.17, intron 2 of 32) protein_coding-intron (ENSMUSG00000024998.17, intron 1 of 31) -85698 ENSMUSG00000088940.1 ENSMUSG00000088940 ENSMUST00000158315 Gm24930 misc_RNA Interval_160962 chr8 116458491 116459796 + 0 NA Intergenic Intergenic -30043 ENSMUSG00000110700.1 ENSMUSG00000110700 ENSMUST00000212720 Gm5357 processed_pseudogene Interval_36021 chr12 33352667 33353309 + 0 NA intron (ENSMUSG00000020564.17, intron 5 of 8) protein_coding-intron (ENSMUSG00000020564.17, intron 5 of 7) 38588 ENSMUSG00000020564.17 ENSMUSG00000020564 ENSMUST00000142184 Atxn7l1 protein_coding Interval_151061 chr7 118250219 118251711 + 0 NA Intergenic Intergenic 7100 ENSMUSG00000055159.7 ENSMUSG00000055159 ENSMUST00000138180 4930583K01Rik bidirectional_promoter_lncRNA Interval_166731 chr9 62315952 62316570 + 0 NA intron (ENSMUSG00000111193.1, intron 4 of 7) lincRNA-intron (ENSMUSG00000111193.1, intron 4 of 7) 17759 ENSMUSG00000111193.1 ENSMUSG00000111193 ENSMUST00000216565 Gm35288 lincRNA Interval_104993 chr3 79566980 79569070 + 0 NA promoter-TSS (ENSMUSG00000061175.12) protein_coding-promoter-TSS (ENSMUSG00000061175.12) -167 ENSMUSG00000068957.1 ENSMUSG00000068957 ENSMUST00000091023 4930589L23Rik lincRNA Interval_42659 chr13 17761166 17761469 + 0 NA intron (ENSMUSG00000041297.8, intron 5 of 13) protein_coding-intron (ENSMUSG00000041297.8, intron 5 of 13) -3992 ENSMUSG00000113140.1 ENSMUSG00000113140 ENSMUST00000220696 Gm48624 TEC Interval_70451 chr17 10317942 10320446 + 0 NA exon (ENSMUSG00000062078.15, exon 1 of 7) protein_coding-exon (ENSMUSG00000062078.15, exon 1 of 7) 167 ENSMUSG00000062078.15 ENSMUSG00000062078 ENSMUST00000233684 Qk protein_coding Interval_132506 chr5 145614400 145614617 + 0 NA Intergenic Intergenic 8859 ENSMUSG00000105474.1 ENSMUSG00000105474 ENSMUST00000197069 Selenok-ps7 processed_pseudogene Interval_29721 chr11 86403116 86403650 + 0 NA Intergenic Intergenic -5443 ENSMUSG00000088091.1 ENSMUSG00000088091 ENSMUST00000157466 Gm23667 rRNA Interval_134878 chr6 33027903 33028616 + 0 NA intron (ENSMUSG00000053768.13, intron 2 of 7) protein_coding-intron (ENSMUSG00000053768.13, intron 2 of 7) -10209 ENSMUSG00000085847.1 ENSMUSG00000085847 ENSMUST00000138298 Gm14540 antisense Interval_60569 chr15 75143829 75144183 + 0 NA Intergenic Intergenic -9182 ENSMUSG00000102051.1 ENSMUSG00000102051 ENSMUST00000190944 Ly6a2 transcribed_unprocessed_pseudogene Interval_118996 chr4 134913381 134913690 + 0 NA intron (ENSMUSG00000028822.11, intron 1 of 6) protein_coding-intron (ENSMUSG00000028822.11, intron 1 of 6) 1480 ENSMUSG00000028822.11 ENSMUSG00000028822 ENSMUST00000105863 Tmem50a protein_coding Interval_26439 chr11 57866277 57866628 + 0 NA Intergenic Intergenic -14444 ENSMUSG00000084223.1 ENSMUSG00000084223 ENSMUST00000119500 Gm12244 processed_pseudogene Interval_111670 chr4 25660894 25661914 + 0 NA intron (ENSMUSG00000055373.8, intron 1 of 1) protein_coding-intron (ENSMUSG00000055373.8, intron 2 of 2) -94582 ENSMUSG00000065040.1 ENSMUSG00000065040 ENSMUST00000083106 Gm24977 snRNA Interval_162799 chr9 9200738 9201021 + 0 NA intron (ENSMUSG00000050730.17, intron 1 of 5) protein_coding-intron (ENSMUSG00000050730.17, intron 1 of 22) -35409 ENSMUSG00000085253.3 ENSMUSG00000085253 ENSMUST00000150263 Gm16833 antisense Interval_25041 chr11 43451328 43451512 + 0 NA Intergenic Intergenic 12065 ENSMUSG00000084307.1 ENSMUSG00000084307 ENSMUST00000121374 Gm12151 processed_pseudogene Interval_140111 chr6 114307543 114308375 + 0 NA TTS (ENSMUSG00000030310.10) protein_coding-TTS (ENSMUSG00000030310.10) 25169 ENSMUSG00000030310.10 ENSMUSG00000030310 ENSMUST00000204540 Slc6a1 protein_coding Interval_165125 chr9 44693050 44693550 + 0 NA intron (ENSMUSG00000048537.16, intron 14 of 15) protein_coding-intron (ENSMUSG00000048537.16, intron 20 of 21) 10004 ENSMUSG00000032098.13 ENSMUSG00000032098 ENSMUST00000150822 Treh protein_coding Interval_14830 chr10 40348579 40350143 + 0 NA promoter-TSS (ENSMUSG00000038481.13) protein_coding-promoter-TSS (ENSMUSG00000038481.13) 742 ENSMUSG00000038491.9 ENSMUSG00000038491 ENSMUST00000044774 Cdk19os antisense Interval_98037 chr2 147019782 147020303 + 0 NA intron (ENSMUSG00000027433.5, intron 1 of 29) protein_coding-intron (ENSMUSG00000027433.5, intron 1 of 29) -9510 ENSMUSG00000027433.5 ENSMUSG00000027433 ENSMUST00000137358 Xrn2 protein_coding Interval_73541 chr17 40157641 40158321 + 0 NA Intergenic Intergenic 28822 ENSMUSG00000117125.1 ENSMUSG00000117125 ENSMUST00000233501 Gm49836 unprocessed_pseudogene Interval_40137 chr12 101896556 101897365 + 0 NA intron (ENSMUSG00000021188.14, intron 4 of 10) protein_coding-intron (ENSMUSG00000021188.14, intron 4 of 20) -9120 ENSMUSG00000093437.1 ENSMUSG00000093437 ENSMUST00000176181 Gm20702 processed_pseudogene Interval_123766 chr5 35358014 35358323 + 0 NA Intergenic Intergenic -3385 ENSMUSG00000106762.3 ENSMUSG00000106762 ENSMUST00000201921 4930478P22Rik lincRNA Interval_88201 chr19 60611211 60612087 + 0 NA intron (ENSMUSG00000117790.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000117790.1, intron 1 of 2) 362 ENSMUSG00000117790.1 ENSMUSG00000117790 ENSMUST00000236155 Gm46652 lincRNA Interval_78357 chr18 12142173 12142792 + 0 NA intron (ENSMUSG00000024404.7, intron 1 of 4) protein_coding-intron (ENSMUSG00000024404.7, intron 6 of 12) -4766 ENSMUSG00000024404.7 ENSMUSG00000024404 ENSMUST00000234006 Riok3 protein_coding Interval_66653 chr16 35874567 35874848 + 0 NA Intergenic Intergenic -3325 ENSMUSG00000034422.14 ENSMUSG00000034422 ENSMUST00000135669 Parp14 protein_coding Interval_67279 chr16 45333993 45334959 + 0 NA Intergenic Intergenic 74531 ENSMUSG00000022661.14 ENSMUSG00000022661 ENSMUST00000172091 Cd200 protein_coding Interval_69459 chr16 93663266 93663696 + 0 NA Intergenic Intergenic -6347 ENSMUSG00000118512.1 ENSMUSG00000118512 ENSMUST00000239088 AC160993.1 processed_pseudogene Interval_117533 chr4 124458672 124459030 + 0 NA intron (ENSMUSG00000084757.7, intron 2 of 3) lincRNA-intron (ENSMUSG00000084757.7, intron 2 of 3) -7566 ENSMUSG00000084757.7 ENSMUSG00000084757 ENSMUST00000156566 1700057H15Rik lincRNA Interval_114785 chr4 85248225 85248519 + 0 NA intron (ENSMUSG00000028488.15, intron 1 of 7) protein_coding-intron (ENSMUSG00000028488.15, intron 1 of 8) -2610 ENSMUSG00000081862.1 ENSMUSG00000081862 ENSMUST00000121508 Gm12413 processed_pseudogene Interval_160930 chr8 115198466 115199880 + 0 NA intron (ENSMUSG00000004637.15, intron 2 of 2) protein_coding-intron (ENSMUSG00000004637.15, intron 8 of 8) -146260 ENSMUSG00000088428.1 ENSMUSG00000088428 ENSMUST00000157803 Gm22556 rRNA Interval_53157 chr14 54780963 54782166 + 0 NA exon (ENSMUSG00000022180.7, exon 1 of 11) protein_coding-exon (ENSMUSG00000022180.7, exon 1 of 11) 382 ENSMUSG00000022180.7 ENSMUSG00000022180 ENSMUST00000226646 Slc7a8 protein_coding Interval_54645 chr14 72709222 72710772 + 0 NA promoter-TSS (ENSMUSG00000033487.14) protein_coding-promoter-TSS (ENSMUSG00000033487.14) -154 ENSMUSG00000033487.14 ENSMUSG00000033487 ENSMUST00000163013 Fndc3a protein_coding Interval_93497 chr2 73550763 73551315 + 0 NA Intergenic Intergenic 29299 ENSMUSG00000027107.3 ENSMUSG00000027107 ENSMUST00000028515 Chrna1 protein_coding Interval_157708 chr8 72429611 72430938 + 0 NA promoter-TSS (ENSMUSG00000083922.1) processed_pseudogene-promoter-TSS (ENSMUSG00000083922.1) -322 ENSMUSG00000083922.1 ENSMUSG00000083922 ENSMUST00000120752 Gm3835 processed_pseudogene Interval_90415 chr2 30316285 30316763 + 0 NA exon (ENSMUSG00000052533.14, exon 14 of 44) protein_coding-exon (ENSMUSG00000052533.14, exon 14 of 44) 7462 ENSMUSG00000084892.1 ENSMUSG00000084892 ENSMUST00000141035 Gm14471 processed_transcript Interval_130819 chr5 130937210 130937441 + 0 NA intron (ENSMUSG00000034040.16, intron 6 of 10) protein_coding-intron (ENSMUSG00000034040.16, intron 6 of 10) 22710 ENSMUSG00000107295.1 ENSMUSG00000107295 ENSMUST00000201249 Gm42896 TEC Interval_162460 chr8 129074001 129074365 + 0 NA intron (ENSMUSG00000056018.14, intron 2 of 14) protein_coding-intron (ENSMUSG00000056018.14, intron 2 of 14) 39243 ENSMUSG00000077771.1 ENSMUSG00000077771 ENSMUST00000104583 Gm22374 snoRNA Interval_60500 chr15 74455867 74456084 + 0 NA Intergenic Intergenic -15531 ENSMUSG00000118581.1 ENSMUSG00000118581 ENSMUST00000239328 AC119183.1 unitary_pseudogene Interval_99996 chr2 166308258 166308764 + 0 NA Intergenic Intergenic 34603 ENSMUSG00000084840.1 ENSMUSG00000084840 ENSMUST00000152987 Gm11468 lincRNA Interval_153585 chr8 3535770 3536862 + 0 NA promoter-TSS (ENSMUSG00000004565.15) protein_coding-promoter-TSS (ENSMUSG00000004565.15) -470 ENSMUSG00000004565.15 ENSMUSG00000004565 ENSMUST00000208691 Pnpla6 protein_coding Interval_34930 chr12 13626703 13627983 + 0 NA intron (ENSMUSG00000113666.1, intron 1 of 5) lincRNA-intron (ENSMUSG00000113666.1, intron 1 of 5) 303 ENSMUSG00000113666.1 ENSMUSG00000113666 ENSMUST00000221862 Gm35725 lincRNA Interval_2650 chr1 42917939 42918947 + 0 NA Intergenic Intergenic 15386 ENSMUSG00000060679.14 ENSMUSG00000060679 ENSMUST00000202358 Mrps9 protein_coding Interval_100576 chr2 170218387 170219973 + 0 NA Intergenic Intergenic -65855 ENSMUSG00000084013.1 ENSMUSG00000084013 ENSMUST00000118388 Gm14270 processed_pseudogene Interval_31532 chr11 101200996 101201362 + 0 NA promoter-TSS (ENSMUSG00000006920.14) protein_coding-promoter-TSS (ENSMUSG00000006920.14) 8226 ENSMUSG00000006920.14 ENSMUSG00000006920 ENSMUST00000151291 Ezh1 protein_coding Interval_89827 chr2 25737197 25737443 + 0 NA intron (ENSMUSG00000079539.2, intron 1 of 6) protein_coding-intron (ENSMUSG00000079539.2, intron 1 of 6) 311 ENSMUSG00000079539.2 ENSMUSG00000079539 ENSMUST00000114192 Obp2b protein_coding Interval_39244 chr12 86157491 86158415 + 0 NA intron (ENSMUSG00000007867.9, intron 5 of 8) protein_coding-intron (ENSMUSG00000007867.9, intron 4 of 7) -11388 ENSMUSG00000097543.1 ENSMUSG00000097543 ENSMUST00000181667 Gm805 lincRNA Interval_167865 chr9 73151560 73151969 + 0 NA Intergenic Intergenic 19075 ENSMUSG00000103556.1 ENSMUSG00000103556 ENSMUST00000192321 Gm38215 TEC Interval_98403 chr2 152104955 152106540 + 0 NA exon (ENSMUSG00000032802.8, exon 1 of 2) protein_coding-exon (ENSMUSG00000032802.8, exon 1 of 2) 231 ENSMUSG00000032802.8 ENSMUSG00000032802 ENSMUST00000041500 Srxn1 protein_coding Interval_21581 chr10 130279946 130280662 + 0 NA promoter-TSS (ENSMUSG00000048015.4) protein_coding-promoter-TSS (ENSMUSG00000048015.4) -64 ENSMUSG00000048015.4 ENSMUSG00000048015 ENSMUST00000061571 Neurod4 protein_coding Interval_23214 chr11 20594132 20594946 + 0 NA intron (ENSMUSG00000049800.13, intron 1 of 1) protein_coding-intron (ENSMUSG00000049800.13, intron 1 of 1) -19350 ENSMUSG00000083555.1 ENSMUSG00000083555 ENSMUST00000121890 Gm12035 processed_pseudogene Interval_86195 chr19 37695849 37699195 + 0 NA promoter-TSS (ENSMUSG00000024987.6) protein_coding-promoter-TSS (ENSMUSG00000024987.6) -563 ENSMUSG00000024987.6 ENSMUSG00000024987 ENSMUST00000236500 Cyp26a1 protein_coding Interval_21822 chr11 4571420 4571763 + 0 NA intron (ENSMUSG00000034354.17, intron 1 of 17) protein_coding-intron (ENSMUSG00000034354.17, intron 1 of 17) 9811 ENSMUSG00000081974.3 ENSMUSG00000081974 ENSMUST00000122068 Gm11960 transcribed_processed_pseudogene Interval_167000 chr9 64406124 64406350 + 0 NA intron (ENSMUSG00000036466.17, intron 1 of 24) protein_coding-intron (ENSMUSG00000036466.17, intron 1 of 24) 20611 ENSMUSG00000036466.17 ENSMUSG00000036466 ENSMUST00000153934 Megf11 protein_coding Interval_81110 chr18 53949704 53951453 + 0 NA intron (ENSMUSG00000073563.3, intron 12 of 12) protein_coding-intron (ENSMUSG00000073563.3, intron 12 of 12) -33743 ENSMUSG00000069376.2 ENSMUSG00000069376 ENSMUST00000091897 Gm5507 processed_pseudogene Interval_115543 chr4 100538125 100538396 + 0 NA intron (ENSMUSG00000069733.11, intron 8 of 9) protein_coding-intron (ENSMUSG00000069733.11, intron 7 of 8) -10459 ENSMUSG00000085871.1 ENSMUSG00000085871 ENSMUST00000142634 Ube2uos antisense Interval_61085 chr15 79140978 79143648 + 0 NA intron (ENSMUSG00000033020.7, intron 1 of 4) protein_coding-intron (ENSMUSG00000033020.7, intron 1 of 4) 1304 ENSMUSG00000033020.7 ENSMUSG00000033020 ENSMUST00000229762 Polr2f protein_coding Interval_172256 chrX 12032000 12032418 + 0 NA Intergenic Intergenic 47741 ENSMUSG00000081947.2 ENSMUSG00000081947 ENSMUST00000117924 Gm14512 processed_pseudogene Interval_97374 chr2 135558939 135562001 + 0 NA intron (ENSMUSG00000085631.1, intron 1 of 1) antisense-intron (ENSMUSG00000085631.1, intron 1 of 1) 23114 ENSMUSG00000085631.1 ENSMUSG00000085631 ENSMUST00000129868 9630028H03Rik antisense Interval_98159 chr2 148889046 148890038 + 0 NA TTS (ENSMUSG00000103559.1) TEC-TTS (ENSMUSG00000103559.1) 746 ENSMUSG00000103559.1 ENSMUSG00000103559 ENSMUST00000195146 Gm38221 TEC Interval_22835 chr11 16498322 16499733 + 0 NA Intergenic Intergenic 9457 ENSMUSG00000078974.10 ENSMUSG00000078974 ENSMUST00000138695 Sec61g protein_coding Interval_47845 chr13 93718883 93719201 + 0 NA promoter-TSS (ENSMUSG00000087334.1) antisense-promoter-TSS (ENSMUSG00000087334.1) 133 ENSMUSG00000087334.1 ENSMUSG00000087334 ENSMUST00000148316 AW495222 antisense Interval_164820 chr9 42208414 42209317 + 0 NA intron (ENSMUSG00000111767.1, intron 1 of 3) lincRNA-intron (ENSMUSG00000111767.1, intron 1 of 4) 348 ENSMUSG00000111767.1 ENSMUSG00000111767 ENSMUST00000216643 4930546K05Rik lincRNA Interval_2267 chr1 37552645 37552839 + 0 NA Intergenic Intergenic -16491 ENSMUSG00000026110.15 ENSMUSG00000026110 ENSMUST00000195598 Mgat4a protein_coding Interval_173197 chrX 74016951 74017512 + 0 NA exon (ENSMUSG00000031392.18, exon 13 of 15) protein_coding-exon (ENSMUSG00000031392.18, exon 13 of 15) 6367 ENSMUSG00000092907.1 ENSMUSG00000092907 ENSMUST00000175166 Mir5132 miRNA Interval_57713 chr15 16445924 16447187 + 0 NA Intergenic Intergenic 50257 ENSMUSG00000115614.1 ENSMUSG00000115614 ENSMUST00000227529 Gm41276 lincRNA Interval_163490 chr9 21691735 21692231 + 0 NA intron (ENSMUSG00000032187.16, intron 29 of 33) protein_coding-intron (ENSMUSG00000032187.16, intron 29 of 33) 14070 ENSMUSG00000099192.1 ENSMUSG00000099192 ENSMUST00000184017 Gm27373 misc_RNA Interval_130663 chr5 129590931 129591430 + 0 NA intron (ENSMUSG00000029436.9, intron 1 of 9) protein_coding-intron (ENSMUSG00000029436.9, intron 1 of 9) -5446 ENSMUSG00000029436.9 ENSMUSG00000029436 ENSMUST00000177802 Mmp17 protein_coding Interval_94937 chr2 102014763 102015538 + 0 NA intron (ENSMUSG00000048058.17, intron 4 of 5) protein_coding-intron (ENSMUSG00000048058.17, intron 4 of 5) -24479 ENSMUSG00000085417.1 ENSMUSG00000085417 ENSMUST00000123891 Gm13919 antisense Interval_2053 chr1 36138083 36138459 + 0 NA exon (ENSMUSG00000102202.1, exon 4 of 4) lincRNA-exon (ENSMUSG00000102202.1, exon 4 of 4) 6042 ENSMUSG00000098752.1 ENSMUSG00000098752 ENSMUST00000184790 Mir6897 miRNA Interval_136323 chr6 53020636 53021703 + 0 NA intron (ENSMUSG00000063568.11, intron 1 of 4) protein_coding-intron (ENSMUSG00000063568.11, intron 1 of 4) -10637 ENSMUSG00000089209.1 ENSMUSG00000089209 ENSMUST00000158584 Gm26215 scaRNA Interval_23683 chr11 24549821 24550139 + 0 NA intron (ENSMUSG00000086892.1, intron 1 of 3) lincRNA-intron (ENSMUSG00000086892.1, intron 1 of 3) 3982 ENSMUSG00000081767.1 ENSMUSG00000081767 ENSMUST00000119755 Gm12067 processed_pseudogene Interval_87251 chr19 47185610 47187289 + 0 NA intron (ENSMUSG00000006435.16, intron 1 of 2) protein_coding-intron (ENSMUSG00000006435.16, intron 1 of 5) 7427 ENSMUSG00000006435.16 ENSMUSG00000006435 ENSMUST00000111807 Neurl1a protein_coding Interval_41924 chr13 4566171 4567329 + 0 NA Intergenic Intergenic -7325 ENSMUSG00000021207.9 ENSMUSG00000021207 ENSMUST00000137279 Akr1c21 protein_coding Interval_30335 chr11 93691311 93691583 + 0 NA Intergenic Intergenic -3635 ENSMUSG00000080872.1 ENSMUSG00000080872 ENSMUST00000122414 Gm11506 processed_pseudogene Interval_64182 chr16 8883337 8884221 + 0 NA Intergenic Intergenic -10608 ENSMUSG00000087982.1 ENSMUSG00000087982 ENSMUST00000157357 Gm22224 rRNA Interval_129133 chr5 117627068 117627578 + 0 NA intron (ENSMUSG00000061578.8, intron 5 of 20) protein_coding-intron (ENSMUSG00000061578.8, intron 5 of 20) 106624 ENSMUSG00000107199.1 ENSMUSG00000107199 ENSMUST00000201553 Gm42550 TEC Interval_150483 chr7 111068142 111071165 + 0 NA exon (ENSMUSG00000005610.17, exon 22 of 22) protein_coding-exon (ENSMUSG00000005610.17, exon 22 of 22) 4596 ENSMUSG00000005610.17 ENSMUSG00000005610 ENSMUST00000160966 Eif4g2 protein_coding Interval_174616 chrX 160137807 160139001 + 0 NA promoter-TSS (ENSMUSG00000031299.10) protein_coding-promoter-TSS (ENSMUSG00000031299.10) -9439 ENSMUSG00000031299.10 ENSMUSG00000031299 ENSMUST00000127535 Pdha1 protein_coding Interval_2189 chr1 36924774 36925104 + 0 NA exon (ENSMUSG00000103159.1, exon 1 of 1) TEC-exon (ENSMUSG00000103159.1, exon 1 of 1) 1409 ENSMUSG00000103159.1 ENSMUSG00000103159 ENSMUST00000194249 F830112A20Rik TEC Interval_156856 chr8 61242735 61244362 + 0 NA intron (ENSMUSG00000031642.9, intron 2 of 10) protein_coding-intron (ENSMUSG00000031642.9, intron 2 of 11) 45324 ENSMUSG00000099419.1 ENSMUSG00000099419 ENSMUST00000188654 1700001D01Rik antisense Interval_20961 chr10 122792020 122793429 + 0 NA promoter-TSS (ENSMUSG00000112220.1) antisense-promoter-TSS (ENSMUSG00000112220.1) -241 ENSMUSG00000112220.1 ENSMUSG00000112220 ENSMUST00000220013 Gm36208 antisense Interval_43818 chr13 37262819 37263195 + 0 NA Intergenic Intergenic 14347 ENSMUSG00000114249.1 ENSMUSG00000114249 ENSMUST00000225533 Gm47709 lincRNA Interval_32946 chr11 113297720 113298063 + 0 NA intron (ENSMUSG00000041654.15, intron 7 of 9) protein_coding-intron (ENSMUSG00000041654.15, intron 8 of 10) -88222 ENSMUSG00000085421.1 ENSMUSG00000085421 ENSMUST00000130373 4732490B19Rik lincRNA Interval_27979 chr11 71820927 71821863 + 0 NA Intergenic Intergenic 26811 ENSMUSG00000077456.1 ENSMUSG00000077456 ENSMUST00000104268 Gm22927 snoRNA Interval_69909 chr17 3132794 3133355 + 0 NA intron (ENSMUSG00000046201.9, intron 2 of 4) protein_coding-intron (ENSMUSG00000046201.9, intron 1 of 19) -2562 ENSMUSG00000116941.1 ENSMUSG00000116941 ENSMUST00000232579 Gm46578 processed_pseudogene Interval_111060 chr4 11564289 11565556 + 0 NA intron (ENSMUSG00000078773.11, intron 2 of 4) protein_coding-intron (ENSMUSG00000078773.11, intron 2 of 14) -11721 ENSMUSG00000078773.11 ENSMUSG00000078773 ENSMUST00000144499 Rad54b protein_coding Interval_131380 chr5 136810503 136811027 + 0 NA intron (ENSMUSG00000004415.15, intron 3 of 3) protein_coding-intron (ENSMUSG00000004415.15, intron 3 of 12) 27544 ENSMUSG00000004415.15 ENSMUSG00000004415 ENSMUST00000140245 Col26a1 protein_coding Interval_21024 chr10 123480250 123480520 + 0 NA intron (ENSMUSG00000044071.9, intron 2 of 5) protein_coding-intron (ENSMUSG00000044071.9, intron 2 of 5) 42885 ENSMUSG00000112036.1 ENSMUSG00000112036 ENSMUST00000220160 Gm47801 TEC Interval_134114 chr6 20620255 20621577 + 0 NA Intergenic Intergenic 350074 ENSMUSG00000106763.1 ENSMUSG00000106763 ENSMUST00000201133 Gm19102 processed_pseudogene Interval_57868 chr15 23702098 23702308 + 0 NA Intergenic Intergenic 27450 ENSMUSG00000115129.1 ENSMUSG00000115129 ENSMUST00000228912 Gm48916 TEC Interval_89861 chr2 26069216 26069403 + 0 NA intron (ENSMUSG00000026932.14, intron 2 of 2) protein_coding-intron (ENSMUSG00000026932.14, intron 2 of 5) 10299 ENSMUSG00000087515.1 ENSMUSG00000087515 ENSMUST00000137349 Gm13554 antisense Interval_46758 chr13 70004931 70005250 + 0 NA intron (ENSMUSG00000099639.6, intron 4 of 4) lincRNA-intron (ENSMUSG00000099639.6, intron 4 of 4) 2524 ENSMUSG00000113980.1 ENSMUSG00000113980 ENSMUST00000221449 Gm47655 processed_pseudogene Interval_133166 chr5 150275414 150275990 + 0 NA intron (ENSMUSG00000056602.12, intron 1 of 60) protein_coding-intron (ENSMUSG00000056602.12, intron 1 of 60) -19686 ENSMUSG00000056602.12 ENSMUSG00000056602 ENSMUST00000201628 Fry protein_coding Interval_163561 chr9 22115767 22116556 + 0 NA intron (ENSMUSG00000013822.7, intron 1 of 2) protein_coding-intron (ENSMUSG00000013822.7, intron 1 of 2) -1167 ENSMUSG00000111856.1 ENSMUSG00000111856 ENSMUST00000214165 6530413G14Rik processed_transcript Interval_73266 chr17 35868574 35870418 + 0 NA intron (ENSMUSG00000034595.17, intron 1 of 2) protein_coding-intron (ENSMUSG00000034595.17, intron 1 of 2) 1093 ENSMUSG00000034595.17 ENSMUSG00000034595 ENSMUST00000190496 Ppp1r18 protein_coding Interval_72065 chr17 27803930 27804944 + 0 NA intron (ENSMUSG00000056692.13, intron 1 of 4) protein_coding-intron (ENSMUSG00000056692.13, intron 1 of 3) 16129 ENSMUSG00000056692.13 ENSMUSG00000056692 ENSMUST00000233035 Ilrun protein_coding Interval_174073 chrX 134307749 134308758 + 0 NA promoter-TSS (ENSMUSG00000031262.12) protein_coding-promoter-TSS (ENSMUSG00000031262.12) -3745 ENSMUSG00000031262.12 ENSMUSG00000031262 ENSMUST00000125604 Cenpi protein_coding Interval_119756 chr4 139710452 139711121 + 0 NA Intergenic Intergenic 57237 ENSMUSG00000028738.14 ENSMUSG00000028738 ENSMUST00000166773 Tas1r2 protein_coding Interval_27424 chr11 67538778 67538994 + 0 NA intron (ENSMUSG00000033066.16, intron 1 of 6) protein_coding-intron (ENSMUSG00000033066.16, intron 1 of 13) 38580 ENSMUSG00000087058.1 ENSMUSG00000087058 ENSMUST00000152963 Gm12301 antisense Interval_152409 chr7 132820370 132820682 + 0 NA intron (ENSMUSG00000030849.18, intron 2 of 6) protein_coding-intron (ENSMUSG00000030849.18, intron 2 of 6) -17776 ENSMUSG00000030956.15 ENSMUSG00000030956 ENSMUST00000148303 Fam53b protein_coding Interval_81624 chr18 62293032 62293911 + 0 NA Intergenic Intergenic -47579 ENSMUSG00000026322.9 ENSMUSG00000026322 ENSMUST00000236691 Htr4 protein_coding Interval_70621 chr17 12407000 12407743 + 0 NA intron (ENSMUSG00000059481.5, intron 13 of 18) protein_coding-intron (ENSMUSG00000059481.5, intron 13 of 18) 28712 ENSMUSG00000059481.5 ENSMUSG00000059481 ENSMUST00000232767 Plg protein_coding Interval_55907 chr14 101949097 101949417 + 0 NA Intergenic Intergenic 33506 ENSMUSG00000115584.1 ENSMUSG00000115584 ENSMUST00000226515 Gm5854 processed_pseudogene Interval_10811 chr1 175491735 175493047 + 0 NA promoter-TSS (ENSMUSG00000026527.13) protein_coding-promoter-TSS (ENSMUSG00000026527.13) -81918 ENSMUSG00000103079.1 ENSMUSG00000103079 ENSMUST00000195831 Gm36307 lincRNA Interval_157816 chr8 73909735 73909905 + 0 NA Intergenic Intergenic 38127 ENSMUSG00000110609.1 ENSMUSG00000110609 ENSMUST00000212607 Gm7948 processed_pseudogene Interval_84385 chr19 10530319 10530592 + 0 NA intron (ENSMUSG00000034820.4, intron 2 of 8) protein_coding-intron (ENSMUSG00000034820.4, intron 2 of 9) -1372 ENSMUSG00000034820.4 ENSMUSG00000034820 ENSMUST00000236154 Cpsf7 protein_coding Interval_14563 chr10 35835095 35836135 + 0 NA Intergenic Intergenic -2875 ENSMUSG00000111550.1 ENSMUSG00000111550 ENSMUST00000213846 Gm49446 lincRNA Interval_41679 chr12 117678871 117679160 + 0 NA intron (ENSMUSG00000041992.9, intron 1 of 17) protein_coding-intron (ENSMUSG00000041992.9, intron 11 of 27) -9941 ENSMUSG00000041992.9 ENSMUSG00000041992 ENSMUST00000222035 Rapgef5 protein_coding Interval_161376 chr8 120061064 120062911 + 0 NA intron (ENSMUSG00000092329.1, intron 1 of 15) protein_coding-intron (ENSMUSG00000092329.1, intron 1 of 15) -16700 ENSMUSG00000089776.1 ENSMUSG00000089776 ENSMUST00000160605 Gm15684 antisense Interval_17108 chr10 71381152 71382578 + 0 NA exon (ENSMUSG00000060733.13, exon 6 of 6) protein_coding-exon (ENSMUSG00000060733.13, exon 6 of 6) 34029 ENSMUSG00000060733.13 ENSMUSG00000060733 ENSMUST00000145521 Ipmk protein_coding Interval_24376 chr11 32741466 32741721 + 0 NA intron (ENSMUSG00000020271.17, intron 11 of 12) protein_coding-intron (ENSMUSG00000020271.17, intron 12 of 13) 34046 ENSMUSG00000098054.1 ENSMUSG00000098054 ENSMUST00000182196 Gm8192 processed_pseudogene Interval_152118 chr7 129591359 129592525 + 0 NA promoter-TSS (ENSMUSG00000042055.13) protein_coding-promoter-TSS (ENSMUSG00000042055.13) -15865 ENSMUSG00000042055.13 ENSMUSG00000042055 ENSMUST00000136560 Wdr11 protein_coding Interval_33393 chr11 116318492 116319904 + 0 NA Intergenic Intergenic 7519 ENSMUSG00000064588.1 ENSMUSG00000064588 ENSMUST00000082654 n-R5s74 rRNA Interval_12764 chr10 5057754 5058036 + 0 NA exon (ENSMUSG00000096054.3, exon 3 of 17) protein_coding-exon (ENSMUSG00000096054.3, exon 3 of 17) -11300 ENSMUSG00000096553.2 ENSMUSG00000096553 ENSMUST00000238588 Gm10097 antisense Interval_26199 chr11 55039611 55040163 + 0 NA Intergenic Intergenic -6472 ENSMUSG00000018340.13 ENSMUSG00000018340 ENSMUST00000148298 Anxa6 protein_coding Interval_7677 chr1 132988989 132989327 + 0 NA TTS (ENSMUSG00000054387.13) protein_coding-TTS (ENSMUSG00000054387.13) 36199 ENSMUSG00000054387.13 ENSMUSG00000054387 ENSMUST00000186645 Mdm4 protein_coding Interval_17962 chr10 81092613 81093052 + 0 NA promoter-TSS (ENSMUSG00000035041.8) protein_coding-promoter-TSS (ENSMUSG00000035041.8) -926 ENSMUSG00000035041.8 ENSMUSG00000035041 ENSMUST00000125907 Creb3l3 protein_coding Interval_47706 chr13 91522310 91522545 + 0 NA intron (ENSMUSG00000003992.15, intron 1 of 10) protein_coding-intron (ENSMUSG00000003992.15, intron 1 of 16) 61257 ENSMUSG00000003992.15 ENSMUSG00000003992 ENSMUST00000137658 Ssbp2 protein_coding Interval_10266 chr1 167688243 167689957 + 0 NA promoter-TSS (ENSMUSG00000026686.14) protein_coding-promoter-TSS (ENSMUSG00000026686.14) -137 ENSMUSG00000026686.14 ENSMUSG00000026686 ENSMUST00000028003 Lmx1a protein_coding Interval_65282 chr16 21209976 21211432 + 0 NA promoter-TSS (ENSMUSG00000005958.15) protein_coding-promoter-TSS (ENSMUSG00000005958.15) 180 ENSMUSG00000005958.15 ENSMUSG00000005958 ENSMUST00000160053 Ephb3 protein_coding Interval_137626 chr6 76392154 76392529 + 0 NA Intergenic Intergenic 63524 ENSMUSG00000107612.1 ENSMUSG00000107612 ENSMUST00000205140 Gm44163 processed_pseudogene Interval_95590 chr2 112518726 112518945 + 0 NA intron (ENSMUSG00000003604.14, intron 2 of 5) protein_coding-intron (ENSMUSG00000003604.14, intron 2 of 5) 17966 ENSMUSG00000080622.1 ENSMUSG00000080622 ENSMUST00000116972 Gm22676 snoRNA Interval_54225 chr14 66534840 66535163 + 0 NA Intergenic Intergenic 56694 ENSMUSG00000088737.1 ENSMUSG00000088737 ENSMUST00000158112 Gm23899 rRNA Interval_61692 chr15 83432150 83433558 + 0 NA promoter-TSS (ENSMUSG00000016664.16) protein_coding-promoter-TSS (ENSMUSG00000016664.16) -26791 ENSMUSG00000049414.7 ENSMUSG00000049414 ENSMUST00000079706 Gm5417 processed_pseudogene Interval_104834 chr3 75655304 75656174 + 0 NA promoter-TSS (ENSMUSG00000099370.1) lincRNA-promoter-TSS (ENSMUSG00000099370.1) -7082 ENSMUSG00000099370.1 ENSMUSG00000099370 ENSMUST00000191479 Platr10 lincRNA Interval_44839 chr13 49013220 49013977 + 0 NA Intergenic Intergenic -45581 ENSMUSG00000038014.7 ENSMUSG00000038014 ENSMUST00000060805 Fam120a protein_coding Interval_27752 chr11 69784525 69785965 + 0 NA intron (ENSMUSG00000041189.9, intron 9 of 10) protein_coding-intron (ENSMUSG00000041189.9, intron 9 of 10) 9025 ENSMUSG00000041189.9 ENSMUSG00000041189 ENSMUST00000147791 Chrnb1 protein_coding Interval_78964 chr18 23146706 23148063 + 0 NA TTS (ENSMUSG00000077680.1) snoRNA-TTS (ENSMUSG00000077680.1) 290 ENSMUSG00000077680.1 ENSMUSG00000077680 ENSMUST00000104492 Gm22495 snoRNA Interval_161303 chr8 119625659 119626380 + 0 NA exon (ENSMUSG00000045246.11, exon 3 of 3) protein_coding-exon (ENSMUSG00000045246.11, exon 3 of 3) 9327 ENSMUSG00000045246.11 ENSMUSG00000045246 ENSMUST00000061828 Kcng4 protein_coding Interval_87892 chr19 56919395 56919966 + 0 NA TTS (ENSMUSG00000025083.18) protein_coding-TTS (ENSMUSG00000025083.18) 17558 ENSMUSG00000025083.18 ENSMUSG00000025083 ENSMUST00000132851 Afap1l2 protein_coding Interval_163908 chr9 28247773 28248535 + 0 NA intron (ENSMUSG00000062257.13, intron 1 of 7) protein_coding-intron (ENSMUSG00000062257.13, intron 1 of 7) -44594 ENSMUSG00000106021.1 ENSMUSG00000106021 ENSMUST00000199274 Gm44316 miRNA Interval_40263 chr12 102877196 102879002 + 0 NA intron (ENSMUSG00000041702.7, intron 1 of 1) protein_coding-intron (ENSMUSG00000041702.7, intron 1 of 10) 307 ENSMUSG00000041702.7 ENSMUSG00000041702 ENSMUST00000221914 Btbd7 protein_coding Interval_15028 chr10 42030988 42031453 + 0 NA Intergenic Intergenic -12840 ENSMUSG00000071324.11 ENSMUSG00000071324 ENSMUST00000161081 Armc2 protein_coding Interval_84438 chr19 10916363 10916886 + 0 NA promoter-TSS (ENSMUSG00000024734.8) protein_coding-promoter-TSS (ENSMUSG00000024734.8) -326 ENSMUSG00000024734.8 ENSMUSG00000024734 ENSMUST00000025641 Zp1 protein_coding Interval_8108 chr1 135765550 135767158 + 0 NA promoter-TSS (ENSMUSG00000041801.5) protein_coding-promoter-TSS (ENSMUSG00000041801.5) -780 ENSMUSG00000041801.5 ENSMUSG00000041801 ENSMUST00000136445 Phlda3 protein_coding Interval_139829 chr6 109553028 109553225 + 0 NA Intergenic Intergenic 2755 ENSMUSG00000108272.1 ENSMUSG00000108272 ENSMUST00000203532 Gm44161 processed_pseudogene Interval_68525 chr16 78390927 78391149 + 0 NA Intergenic Intergenic -17702 ENSMUSG00000022863.15 ENSMUSG00000022863 ENSMUST00000148124 Btg3 protein_coding Interval_50268 chr14 11552648 11555225 + 0 NA exon (ENSMUSG00000021745.14, exon 1 of 30) protein_coding-exon (ENSMUSG00000021745.14, exon 1 of 30) -33166 ENSMUSG00000114849.1 ENSMUSG00000114849 ENSMUST00000224543 Gm48595 lincRNA Interval_174078 chrX 134404076 134404927 + 0 NA promoter-TSS (ENSMUSG00000000223.13) protein_coding-promoter-TSS (ENSMUSG00000000223.13) -127 ENSMUSG00000000223.13 ENSMUSG00000000223 ENSMUST00000000228 Drp2 protein_coding Interval_55406 chr14 86788428 86789895 + 0 NA intron (ENSMUSG00000022021.14, intron 25 of 26) protein_coding-intron (ENSMUSG00000022021.14, intron 25 of 27) -81976 ENSMUSG00000115306.1 ENSMUSG00000115306 ENSMUST00000226731 Gm49159 TEC Interval_136205 chr6 52028192 52028681 + 0 NA Intergenic Intergenic 15835 ENSMUSG00000108244.1 ENSMUSG00000108244 ENSMUST00000203453 Gm44077 lincRNA Interval_78514 chr18 13933579 13933886 + 0 NA intron (ENSMUSG00000024420.9, intron 2 of 2) protein_coding-intron (ENSMUSG00000024420.9, intron 3 of 7) -30262 ENSMUSG00000117600.1 ENSMUSG00000117600 ENSMUST00000234954 Gm50094 TEC Interval_85237 chr19 24100308 24101876 + 0 NA intron (ENSMUSG00000024812.11, intron 19 of 23) protein_coding-intron (ENSMUSG00000024812.11, intron 18 of 22) 36299 ENSMUSG00000096796.1 ENSMUSG00000096796 ENSMUST00000178667 1700021P04Rik lincRNA Interval_111605 chr4 24436346 24437845 + 0 NA Intergenic Intergenic -6205 ENSMUSG00000099150.1 ENSMUSG00000099150 ENSMUST00000183964 Gm27243 lincRNA Interval_26708 chr11 59872487 59872708 + 0 NA intron (ENSMUSG00000032615.14, intron 3 of 4) protein_coding-intron (ENSMUSG00000032615.14, intron 3 of 4) -25777 ENSMUSG00000084766.1 ENSMUSG00000084766 ENSMUST00000143391 Gm12714 lincRNA Interval_25987 chr11 53335409 53338159 + 0 NA Intergenic Intergenic 8893 ENSMUSG00000082263.1 ENSMUSG00000082263 ENSMUST00000122382 Gm11188 processed_pseudogene Interval_53284 chr14 55769475 55769751 + 0 NA intron (ENSMUSG00000022220.14, intron 19 of 20) protein_coding-intron (ENSMUSG00000022220.14, intron 24 of 25) 3651 ENSMUSG00000046908.5 ENSMUSG00000046908 ENSMUST00000057569 Ltb4r1 protein_coding Interval_174584 chrX 159499596 159500053 + 0 NA Intergenic Intergenic 40687 ENSMUSG00000041020.14 ENSMUSG00000041020 ENSMUST00000156172 Map7d2 protein_coding Interval_83213 chr18 82798227 82799044 + 0 NA Intergenic Intergenic -39594 ENSMUSG00000101773.1 ENSMUSG00000101773 ENSMUST00000188435 2210420H20Rik lincRNA Interval_69390 chr16 92639048 92640039 + 0 NA intron (ENSMUSG00000022952.17, intron 3 of 4) protein_coding-intron (ENSMUSG00000022952.17, intron 6 of 7) 26729 ENSMUSG00000097139.3 ENSMUSG00000097139 ENSMUST00000180989 Gm26626 antisense Interval_98206 chr2 149873568 149874621 + 0 NA intron (ENSMUSG00000074736.10, intron 2 of 2) protein_coding-intron (ENSMUSG00000074736.10, intron 1 of 4) -42452 ENSMUSG00000074737.2 ENSMUSG00000074737 ENSMUST00000099264 C530025M09Rik antisense Interval_61110 chr15 79289698 79290752 + 0 NA intron (ENSMUSG00000042632.17, intron 5 of 6) protein_coding-intron (ENSMUSG00000042632.17, intron 11 of 15) -1988 ENSMUSG00000042632.17 ENSMUSG00000042632 ENSMUST00000172936 Pla2g6 protein_coding Interval_110927 chr4 10399472 10400925 + 0 NA Intergenic Intergenic 39545 ENSMUSG00000084215.3 ENSMUSG00000084215 ENSMUST00000119515 Gm11814 processed_pseudogene Interval_54464 chr14 69984075 69984429 + 0 NA intron (ENSMUSG00000022085.4, intron 4 of 6) protein_coding-intron (ENSMUSG00000022085.4, intron 4 of 6) 73115 ENSMUSG00000114446.1 ENSMUSG00000114446 ENSMUST00000224990 Gm33524 antisense Interval_54919 chr14 76241489 76242161 + 0 NA Intergenic Intergenic -4280 ENSMUSG00000095427.2 ENSMUSG00000095427 ENSMUST00000095471 Rps2-ps6 processed_pseudogene Interval_174311 chrX 144317676 144319940 + 0 NA intron (ENSMUSG00000041718.16, intron 1 of 26) protein_coding-intron (ENSMUSG00000041718.16, intron 1 of 3) 1004 ENSMUSG00000041718.16 ENSMUSG00000041718 ENSMUST00000149811 Alg13 protein_coding Interval_102152 chr3 18722883 18723775 + 0 NA Intergenic Intergenic -29748 ENSMUSG00000103264.1 ENSMUSG00000103264 ENSMUST00000194363 Gm30341 processed_pseudogene Interval_137072 chr6 67158030 67159408 + 0 NA intron (ENSMUSG00000097603.3, intron 4 of 5) processed_transcript-intron (ENSMUSG00000097603.3, intron 4 of 5) 43042 ENSMUSG00000097603.3 ENSMUSG00000097603 ENSMUST00000054470 A430010J10Rik processed_transcript Interval_86052 chr19 36014061 36015681 + 0 NA intron (ENSMUSG00000024798.15, intron 2 of 4) protein_coding-intron (ENSMUSG00000024798.15, intron 1 of 3) 42636 ENSMUSG00000024798.15 ENSMUSG00000024798 ENSMUST00000099505 Htr7 protein_coding Interval_128157 chr5 111373693 111374331 + 0 NA intron (ENSMUSG00000050017.11, intron 8 of 10) protein_coding-intron (ENSMUSG00000050017.11, intron 8 of 11) 14277 ENSMUSG00000104559.1 ENSMUSG00000104559 ENSMUST00000199149 Gm43118 antisense Interval_79229 chr18 26161139 26161906 + 0 NA intron (ENSMUSG00000117604.1, intron 8 of 13) processed_transcript-intron (ENSMUSG00000117604.1, intron 8 of 13) 153965 ENSMUSG00000117604.1 ENSMUSG00000117604 ENSMUST00000234272 Gm33228 processed_transcript Interval_85970 chr19 34333878 34334474 + 0 NA Intergenic Intergenic 34101 ENSMUSG00000024778.13 ENSMUSG00000024778 ENSMUST00000236731 Fas protein_coding Interval_135755 chr6 46978216 46978441 + 0 NA intron (ENSMUSG00000039419.17, intron 15 of 23) protein_coding-intron (ENSMUSG00000039419.17, intron 15 of 23) -66828 ENSMUSG00000107952.1 ENSMUSG00000107952 ENSMUST00000203583 Gm6352 processed_pseudogene Interval_130166 chr5 124638848 124639376 + 0 NA intron (ENSMUSG00000038023.12, intron 4 of 19) protein_coding-intron (ENSMUSG00000038023.12, intron 4 of 19) 10536 ENSMUSG00000038023.12 ENSMUSG00000038023 ENSMUST00000197161 Atp6v0a2 protein_coding Interval_92573 chr2 60809093 60809924 + 0 NA intron (ENSMUSG00000026970.16, intron 2 of 14) protein_coding-intron (ENSMUSG00000026970.16, intron 2 of 13) 71930 ENSMUSG00000026970.16 ENSMUSG00000026970 ENSMUST00000128866 Rbms1 protein_coding Interval_3122 chr1 53706010 53707139 + 0 NA intron (ENSMUSG00000096141.2, intron 1 of 3) protein_coding-intron (ENSMUSG00000096141.2, intron 1 of 65) 210 ENSMUSG00000096141.2 ENSMUSG00000096141 ENSMUST00000189677 Dnah7a protein_coding Interval_110201 chr3 154208724 154210780 + 0 NA intron (ENSMUSG00000028360.10, intron 3 of 21) protein_coding-intron (ENSMUSG00000028360.10, intron 3 of 21) 39748 ENSMUSG00000106500.1 ENSMUSG00000106500 ENSMUST00000200319 Gm42540 TEC Interval_145960 chr7 42675065 42675726 + 0 NA intron (ENSMUSG00000069727.5, intron 1 of 3) protein_coding-intron (ENSMUSG00000069727.5, intron 1 of 3) 17347 ENSMUSG00000069727.5 ENSMUSG00000069727 ENSMUST00000206356 Zfp975 protein_coding Interval_56769 chr14 121951662 121951908 + 0 NA TTS (ENSMUSG00000051212.8) protein_coding-TTS (ENSMUSG00000051212.8) 5471 ENSMUSG00000041765.6 ENSMUSG00000041765 ENSMUST00000227936 Ubac2 protein_coding Interval_56986 chr15 3204849 3206428 + 0 NA Intergenic Intergenic 14060 ENSMUSG00000114999.1 ENSMUSG00000114999 ENSMUST00000227053 Gm7962 processed_pseudogene Interval_28448 chr11 75947231 75947756 + 0 NA Intergenic Intergenic -9064 ENSMUSG00000020847.15 ENSMUSG00000020847 ENSMUST00000152035 Rph3al protein_coding Interval_22679 chr11 12905901 12906731 + 0 NA Intergenic Intergenic 31622 ENSMUSG00000083859.1 ENSMUSG00000083859 ENSMUST00000118518 Gm12003 processed_pseudogene Interval_103140 chr3 35885603 35887233 + 0 NA Intergenic Intergenic 22541 ENSMUSG00000097713.1 ENSMUSG00000097713 ENSMUST00000181445 Gm7741 processed_pseudogene Interval_104451 chr3 65830542 65831713 + 0 NA exon (ENSMUSG00000074579.14, exon 13 of 13) protein_coding-exon (ENSMUSG00000074579.14, exon 13 of 13) 33702 ENSMUSG00000103440.1 ENSMUSG00000103440 ENSMUST00000192502 Gm37131 TEC Interval_34770 chr12 10737755 10739351 + 0 NA Intergenic Intergenic -14047 ENSMUSG00000112515.1 ENSMUSG00000112515 ENSMUST00000219622 Gm4928 processed_pseudogene Interval_135713 chr6 44314376 44314682 + 0 NA Intergenic Intergenic -231174 ENSMUSG00000107598.1 ENSMUSG00000107598 ENSMUST00000203777 Gm35216 lincRNA Interval_36448 chr12 44795781 44796722 + 0 NA Intergenic Intergenic -126929 ENSMUSG00000081636.2 ENSMUSG00000081636 ENSMUST00000117663 Gm15901 processed_pseudogene Interval_40279 chr12 103093848 103094110 + 0 NA intron (ENSMUSG00000021198.16, intron 24 of 51) protein_coding-intron (ENSMUSG00000021198.16, intron 21 of 46) -34210 ENSMUSG00000098628.1 ENSMUSG00000098628 ENSMUST00000183635 Gm27976 misc_RNA Interval_7692 chr1 133083892 133084809 + 0 NA intron (ENSMUSG00000026447.17, intron 12 of 32) protein_coding-intron (ENSMUSG00000026447.17, intron 12 of 32) 15771 ENSMUSG00000026447.17 ENSMUSG00000026447 ENSMUST00000239467 Pik3c2b protein_coding Interval_77553 chr17 91471074 91471627 + 0 NA Intergenic Intergenic 65240 ENSMUSG00000117396.1 ENSMUSG00000117396 ENSMUST00000234004 Gm49989 processed_pseudogene Interval_157665 chr8 72160445 72161769 + 0 NA promoter-TSS (ENSMUSG00000003037.16) protein_coding-promoter-TSS (ENSMUSG00000003037.16) -206 ENSMUSG00000003037.16 ENSMUSG00000003037 ENSMUST00000128203 Rab8a protein_coding Interval_477 chr1 6150602 6151440 + 0 NA Intergenic Intergenic 64272 ENSMUSG00000090031.2 ENSMUSG00000090031 ENSMUST00000097832 4732440D04Rik antisense Interval_103773 chr3 52608852 52609509 + 0 NA Intergenic Intergenic -3655 ENSMUSG00000070490.4 ENSMUSG00000070490 ENSMUST00000076317 Gm10293 processed_pseudogene Interval_141591 chr6 130020326 130020586 + 0 NA intron (ENSMUSG00000061769.2, intron 4 of 7) protein_coding-intron (ENSMUSG00000061769.2, intron 4 of 7) 6498 ENSMUSG00000061769.2 ENSMUSG00000061769 ENSMUST00000074056 Klra6 protein_coding Interval_143877 chr7 16884395 16886417 + 0 NA exon (ENSMUSG00000078794.4, exon 4 of 4) protein_coding-exon (ENSMUSG00000078794.4, exon 4 of 4) 5661 ENSMUSG00000108671.1 ENSMUSG00000108671 ENSMUST00000205314 2700080J24Rik TEC Interval_21932 chr11 5271467 5273405 + 0 NA Intergenic Intergenic -1649 ENSMUSG00000118486.1 ENSMUSG00000118486 ENSMUST00000238466 Gm30172 unitary_pseudogene Interval_125099 chr5 64462287 64462504 + 0 NA intron (ENSMUSG00000100911.2, intron 2 of 2) lincRNA-intron (ENSMUSG00000100911.2, intron 2 of 2) 5548 ENSMUSG00000100911.2 ENSMUSG00000100911 ENSMUST00000189767 1700027F09Rik lincRNA Interval_135923 chr6 48741417 48743517 + 0 NA TTS (ENSMUSG00000090019.5) protein_coding-TTS (ENSMUSG00000090019.5) -1023 ENSMUSG00000044867.5 ENSMUSG00000044867 ENSMUST00000205172 Gimap1os processed_transcript Interval_97596 chr2 140237096 140238260 + 0 NA intron (ENSMUSG00000074764.11, intron 18 of 19) protein_coding-intron (ENSMUSG00000074764.11, intron 18 of 19) 59150 ENSMUSG00000074764.11 ENSMUSG00000074764 ENSMUST00000120133 Sel1l2 protein_coding Interval_146640 chr7 49011967 49012539 + 0 NA intron (ENSMUSG00000052512.17, intron 2 of 39) protein_coding-intron (ENSMUSG00000052512.17, intron 2 of 39) 50328 ENSMUSG00000109068.1 ENSMUSG00000109068 ENSMUST00000207469 Gm45207 processed_pseudogene Interval_76964 chr17 85218758 85218942 + 0 NA intron (ENSMUSG00000071037.6, intron 3 of 10) protein_coding-intron (ENSMUSG00000071037.6, intron 3 of 10) 128244 ENSMUSG00000071037.6 ENSMUSG00000071037 ENSMUST00000234501 Camkmt protein_coding Interval_86546 chr19 41608082 41609712 + 0 NA promoter-TSS (ENSMUSG00000025020.11) protein_coding-promoter-TSS (ENSMUSG00000025020.11) 20246 ENSMUSG00000098286.1 ENSMUSG00000098286 ENSMUST00000183602 Mir8091 miRNA Interval_165327 chr9 46318040 46318264 + 0 NA promoter-TSS (ENSMUSG00000111126.1) antisense-promoter-TSS (ENSMUSG00000111126.1) -886 ENSMUSG00000111126.1 ENSMUSG00000111126 ENSMUST00000215849 Gm39329 antisense Interval_145048 chr7 29708645 29709813 + 0 NA intron (ENSMUSG00000049123.10, intron 15 of 27) protein_coding-intron (ENSMUSG00000049123.10, intron 16 of 28) 16240 ENSMUSG00000049123.10 ENSMUSG00000049123 ENSMUST00000207130 Catsperg2 protein_coding Interval_172886 chrX 52790877 52791530 + 0 NA promoter-TSS (ENSMUSG00000073207.1) protein_coding-promoter-TSS (ENSMUSG00000073207.1) 3 ENSMUSG00000073207.1 ENSMUSG00000073207 ENSMUST00000101588 Ccdc160 protein_coding Interval_25074 chr11 43691130 43691354 + 0 NA intron (ENSMUSG00000044950.7, intron 1 of 1) protein_coding-intron (ENSMUSG00000044950.7, intron 1 of 1) 8694 ENSMUSG00000044950.7 ENSMUSG00000044950 ENSMUST00000130467 Pwwp2a protein_coding Interval_135851 chr6 47926666 47926897 + 0 NA exon (ENSMUSG00000052763.7, exon 2 of 5) protein_coding-exon (ENSMUSG00000052763.7, exon 2 of 5) 475 ENSMUSG00000052763.7 ENSMUSG00000052763 ENSMUST00000156500 Zfp212 protein_coding Interval_59780 chr15 59197803 59198023 + 0 NA Intergenic Intergenic -12995 ENSMUSG00000025922.9 ENSMUSG00000025922 ENSMUST00000027054 Rpl7-ps8 processed_pseudogene Interval_2804 chr1 45587271 45588007 + 0 NA Intergenic Intergenic -14387 ENSMUSG00000100894.1 ENSMUSG00000100894 ENSMUST00000185744 Gm8304 processed_pseudogene Interval_159948 chr8 105355202 105356155 + 0 NA exon (ENSMUSG00000014786.8, exon 1 of 11) protein_coding-exon (ENSMUSG00000014786.8, exon 1 of 11) 216 ENSMUSG00000014786.8 ENSMUSG00000014786 ENSMUST00000212772 Slc9a5 protein_coding Interval_111569 chr4 23612811 23613968 + 0 NA Intergenic Intergenic 13356 ENSMUSG00000089323.1 ENSMUSG00000089323 ENSMUST00000158698 Gm25978 miRNA Interval_160806 chr8 112514263 112514488 + 0 NA Intergenic Intergenic 55200 ENSMUSG00000098075.1 ENSMUSG00000098075 ENSMUST00000182027 Gm26994 antisense Interval_4623 chr1 75494963 75495813 + 0 NA TTS (ENSMUSG00000026211.17) protein_coding-TTS (ENSMUSG00000026211.17) -7310 ENSMUSG00000026211.17 ENSMUSG00000026211 ENSMUST00000145306 Obsl1 protein_coding Interval_51419 chr14 27389687 27390097 + 0 NA intron (ENSMUSG00000021895.10, intron 10 of 13) protein_coding-intron (ENSMUSG00000021895.10, intron 7 of 10) -9042 ENSMUSG00000093034.1 ENSMUSG00000093034 ENSMUST00000175293 Gm23633 miRNA Interval_138361 chr6 87614479 87615806 + 0 NA Intergenic Intergenic 17395 ENSMUSG00000108118.1 ENSMUSG00000108118 ENSMUST00000204650 Gm34312 lincRNA Interval_36650 chr12 51751308 51751665 + 0 NA intron (ENSMUSG00000035247.16, intron 36 of 42) protein_coding-intron (ENSMUSG00000035247.16, intron 36 of 42) -11144 ENSMUSG00000089346.1 ENSMUSG00000089346 ENSMUST00000158721 Gm22663 snRNA Interval_91066 chr2 34792465 34792919 + 0 NA intron (ENSMUSG00000070953.13, intron 2 of 4) protein_coding-intron (ENSMUSG00000070953.13, intron 1 of 5) 7220 ENSMUSG00000070953.13 ENSMUSG00000070953 ENSMUST00000144113 Rabepk protein_coding Interval_62906 chr15 97815632 97815871 + 0 NA promoter-TSS (ENSMUSG00000022475.19) protein_coding-promoter-TSS (ENSMUSG00000022475.19) 15743 ENSMUSG00000022475.19 ENSMUSG00000022475 ENSMUST00000134258 Hdac7 protein_coding Interval_155281 chr8 30648215 30648954 + 0 NA Intergenic Intergenic 80191 ENSMUSG00000097044.1 ENSMUSG00000097044 ENSMUST00000180571 4933433F19Rik lincRNA Interval_141599 chr6 130606155 130606331 + 0 NA Intergenic Intergenic -11245 ENSMUSG00000098084.1 ENSMUSG00000098084 ENSMUST00000182262 Gm26914 processed_pseudogene Interval_15893 chr10 59023509 59023748 + 0 NA intron (ENSMUSG00000037990.18, intron 3 of 9) protein_coding-intron (ENSMUSG00000037990.18, intron 3 of 3) 58085 ENSMUSG00000098653.1 ENSMUSG00000098653 ENSMUST00000183751 Gm27672 miRNA Interval_42674 chr13 17859269 17860083 + 0 NA Intergenic Intergenic -35179 ENSMUSG00000114177.1 ENSMUSG00000114177 ENSMUST00000221786 Gm18362 processed_pseudogene Interval_126244 chr5 83888515 83889470 + 0 NA Intergenic Intergenic 25829 ENSMUSG00000106576.1 ENSMUSG00000106576 ENSMUST00000197408 Gm4866 unprocessed_pseudogene Interval_157560 chr8 71436512 71437952 + 0 NA Intergenic Intergenic 26390 ENSMUSG00000007950.9 ENSMUSG00000007950 ENSMUST00000212503 Abhd8 protein_coding Interval_18711 chr10 89543787 89544003 + 0 NA Intergenic Intergenic -10310 ENSMUSG00000047638.15 ENSMUSG00000047638 ENSMUST00000105297 Nr1h4 protein_coding Interval_53899 chr14 63206989 63207600 + 0 NA intron (ENSMUSG00000021944.15, intron 2 of 6) protein_coding-intron (ENSMUSG00000021944.15, intron 2 of 6) -13769 ENSMUSG00000035121.6 ENSMUSG00000035121 ENSMUST00000223723 Neil2 protein_coding Interval_138894 chr6 93126168 93126417 + 0 NA intron (ENSMUSG00000097462.7, intron 2 of 9) antisense-intron (ENSMUSG00000097462.7, intron 2 of 9) 11698 ENSMUSG00000097996.1 ENSMUSG00000097996 ENSMUST00000182893 Gm5313 processed_pseudogene Interval_125483 chr5 67490506 67491042 + 0 NA Intergenic Intergenic 26871 ENSMUSG00000107385.3 ENSMUSG00000107385 ENSMUST00000202828 C330024D21Rik processed_transcript Interval_145888 chr7 41429046 41429543 + 0 NA intron (ENSMUSG00000066537.5, intron 1 of 6) protein_coding-intron (ENSMUSG00000092592.1, intron 3 of 7) 19402 ENSMUSG00000066537.5 ENSMUSG00000066537 ENSMUST00000165029 Vmn2r57 protein_coding Interval_170522 chr9 108501234 108501753 + 0 NA exon (ENSMUSG00000006676.16, exon 27 of 27) protein_coding-exon (ENSMUSG00000006676.16, exon 27 of 27) 5146 ENSMUSG00000006676.16 ENSMUSG00000006676 ENSMUST00000193975 Usp19 protein_coding Interval_122131 chr5 17815536 17816353 + 0 NA intron (ENSMUSG00000002944.15, intron 4 of 14) protein_coding-intron (ENSMUSG00000002944.15, intron 4 of 14) 19773 ENSMUSG00000002944.15 ENSMUSG00000002944 ENSMUST00000197574 Cd36 protein_coding Interval_108432 chr3 127151358 127152107 + 0 NA intron (ENSMUSG00000032826.19, intron 1 of 31) protein_coding-intron (ENSMUSG00000032826.19, intron 3 of 14) -9606 ENSMUSG00000097456.7 ENSMUSG00000097456 ENSMUST00000181792 Gm16958 antisense Interval_96385 chr2 122096147 122096482 + 0 NA intron (ENSMUSG00000033396.13, intron 10 of 12) protein_coding-intron (ENSMUSG00000033396.13, intron 10 of 39) 22061 ENSMUSG00000033396.13 ENSMUSG00000033396 ENSMUST00000135847 Spg11 protein_coding Interval_126517 chr5 89482120 89482337 + 0 NA Intergenic Intergenic 17749 ENSMUSG00000106534.1 ENSMUSG00000106534 ENSMUST00000198766 Gm6366 processed_pseudogene Interval_54853 chr14 75833438 75835565 + 0 NA Intergenic Intergenic -6985 ENSMUSG00000115458.1 ENSMUSG00000115458 ENSMUST00000228454 Gm48931 processed_pseudogene Interval_80398 chr18 41779447 41780174 + 0 NA intron (ENSMUSG00000117745.1, intron 2 of 3) lincRNA-intron (ENSMUSG00000117745.1, intron 2 of 3) 95024 ENSMUSG00000117745.1 ENSMUSG00000117745 ENSMUST00000235677 Gm50410 lincRNA Interval_93813 chr2 77156735 77157001 + 0 NA intron (ENSMUSG00000044033.16, intron 2 of 23) protein_coding-intron (ENSMUSG00000044033.16, intron 2 of 11) 42559 ENSMUSG00000042272.17 ENSMUSG00000042272 ENSMUST00000139021 Sestd1 protein_coding Interval_161635 chr8 121707607 121707813 + 0 NA intron (ENSMUSG00000092329.1, intron 1 of 15) protein_coding-intron (ENSMUSG00000092329.1, intron 1 of 15) -33622 ENSMUSG00000110673.1 ENSMUSG00000110673 ENSMUST00000211931 Gm45833 lincRNA Interval_169007 chr9 90168912 90169257 + 0 NA intron (ENSMUSG00000032363.15, intron 1 of 23) protein_coding-intron (ENSMUSG00000032363.15, intron 1 of 23) 6006 ENSMUSG00000032363.15 ENSMUSG00000032363 ENSMUST00000124441 Adamts7 protein_coding Interval_50768 chr14 19405130 19405334 + 0 NA Intergenic Intergenic -2633 ENSMUSG00000093814.1 ENSMUSG00000093814 ENSMUST00000179141 Gm9637 processed_pseudogene Interval_171320 chr9 116341466 116342227 + 0 NA Intergenic Intergenic 10678 ENSMUSG00000110752.1 ENSMUSG00000110752 ENSMUST00000217456 D730003K21Rik lincRNA Interval_153329 chr7 143649112 143649975 + 0 NA exon (ENSMUSG00000010751.15, exon 1 of 6) protein_coding-exon (ENSMUSG00000010751.15, exon 1 of 6) -12958 ENSMUSG00000010751.15 ENSMUSG00000010751 ENSMUST00000084396 Tnfrsf22 protein_coding Interval_13102 chr10 11343090 11344766 + 0 NA intron (ENSMUSG00000055493.4, intron 1 of 1) protein_coding-intron (ENSMUSG00000055493.4, intron 1 of 3) 475 ENSMUSG00000055493.4 ENSMUSG00000055493 ENSMUST00000161438 Epm2a protein_coding Interval_86181 chr19 37579911 37580152 + 0 NA intron (ENSMUSG00000053799.8, intron 8 of 22) protein_coding-intron (ENSMUSG00000053799.8, intron 7 of 21) 59152 ENSMUSG00000053799.8 ENSMUSG00000053799 ENSMUST00000238817 Exoc6 protein_coding Interval_127766 chr5 107562170 107564230 + 0 NA intron (ENSMUSG00000029276.13, intron 8 of 18) protein_coding-intron (ENSMUSG00000029276.13, intron 8 of 18) 28489 ENSMUSG00000089798.10 ENSMUSG00000089798 ENSMUST00000162591 1700028K03Rik protein_coding Interval_997 chr1 13738722 13739139 + 0 NA Intergenic Intergenic 35534 ENSMUSG00000077368.1 ENSMUSG00000077368 ENSMUST00000104180 Gm26273 snoRNA Interval_112134 chr4 34885926 34887099 + 0 NA Intergenic Intergenic -3582 ENSMUSG00000039967.14 ENSMUSG00000039967 ENSMUST00000047950 Zfp292 protein_coding Interval_37557 chr12 69861192 69861433 + 0 NA intron (ENSMUSG00000034761.15, intron 1 of 29) protein_coding-intron (ENSMUSG00000034761.15, intron 2 of 30) 31791 ENSMUSG00000034761.15 ENSMUSG00000034761 ENSMUST00000147451 Map4k5 protein_coding Interval_9907 chr1 164012791 164013187 + 0 NA Intergenic Intergenic 18100 ENSMUSG00000041396.13 ENSMUSG00000041396 ENSMUST00000111490 Mettl18 protein_coding Interval_59473 chr15 53534306 53534507 + 0 NA intron (ENSMUSG00000058656.13, intron 4 of 4) protein_coding-intron (ENSMUSG00000058656.13, intron 4 of 4) 78792 ENSMUSG00000077567.1 ENSMUSG00000077567 ENSMUST00000104379 Gm23200 snoRNA Interval_143640 chr7 13620140 13621164 + 0 NA Intergenic Intergenic -3315 ENSMUSG00000078799.5 ENSMUSG00000078799 ENSMUST00000108525 Sult2a5 protein_coding Interval_53536 chr14 58607909 58609180 + 0 NA Intergenic Intergenic 41856 ENSMUSG00000077201.1 ENSMUSG00000077201 ENSMUST00000104013 Gm25614 snoRNA Interval_16061 chr10 60422662 60423092 + 0 NA intron (ENSMUSG00000012819.15, intron 18 of 65) protein_coding-intron (ENSMUSG00000012819.15, intron 18 of 66) 22973 ENSMUSG00000090439.3 ENSMUSG00000090439 ENSMUST00000218360 Gm17455 protein_coding Interval_130023 chr5 123737146 123737428 + 0 NA intron (ENSMUSG00000029422.15, intron 7 of 10) protein_coding-intron (ENSMUSG00000029422.15, intron 7 of 11) 12094 ENSMUSG00000029422.15 ENSMUSG00000029422 ENSMUST00000182542 Rsrc2 protein_coding Interval_55821 chr14 100617469 100617813 + 0 NA Intergenic Intergenic -38120 ENSMUSG00000115105.1 ENSMUSG00000115105 ENSMUST00000227628 Gm49238 TEC Interval_7893 chr1 134419260 134419488 + 0 NA intron (ENSMUSG00000026457.14, intron 1 of 7) protein_coding-intron (ENSMUSG00000026457.14, intron 1 of 7) 3903 ENSMUSG00000026457.14 ENSMUSG00000026457 ENSMUST00000148822 Adipor1 protein_coding Interval_68354 chr16 73997983 73999373 + 0 NA intron (ENSMUSG00000052516.19, intron 6 of 27) protein_coding-intron (ENSMUSG00000052516.19, intron 6 of 25) 24237 ENSMUSG00000076284.1 ENSMUSG00000076284 ENSMUST00000102329 Gm24272 miRNA Interval_28224 chr11 74506793 74507309 + 0 NA intron (ENSMUSG00000038807.19, intron 3 of 25) protein_coding-intron (ENSMUSG00000038807.19, intron 3 of 25) 103864 ENSMUSG00000038807.19 ENSMUSG00000038807 ENSMUST00000145524 Rap1gap2 protein_coding Interval_90142 chr2 28504865 28507491 + 0 NA promoter-TSS (ENSMUSG00000063611.5) lincRNA-promoter-TSS (ENSMUSG00000063611.5) 79 ENSMUSG00000063611.5 ENSMUSG00000063611 ENSMUST00000238539 Gm10134 lincRNA Interval_160731 chr8 111871516 111871707 + 0 NA intron (ENSMUSG00000031953.2, intron 1 of 2) protein_coding-intron (ENSMUSG00000031953.2, intron 1 of 2) 5139 ENSMUSG00000031953.2 ENSMUSG00000031953 ENSMUST00000034431 Tmem170 protein_coding Interval_98734 chr2 154576216 154577849 + 0 NA Intergenic Intergenic -7140 ENSMUSG00000027490.17 ENSMUSG00000027490 ENSMUST00000000894 E2f1 protein_coding Interval_44493 chr13 45362054 45362269 + 0 NA Intergenic Intergenic -28766 ENSMUSG00000038175.10 ENSMUSG00000038175 ENSMUST00000222178 Mylip protein_coding Interval_61220 chr15 80066525 80066788 + 0 NA Intergenic Intergenic 11935 ENSMUSG00000077734.1 ENSMUSG00000077734 ENSMUST00000104546 Snord83b snoRNA Interval_3100 chr1 53328499 53328964 + 0 NA intron (ENSMUSG00000101838.6, intron 4 of 5) protein_coding-intron (ENSMUSG00000099913.1, intron 6 of 6) 4612 ENSMUSG00000101838.6 ENSMUSG00000101838 ENSMUST00000186588 Gm18800 transcribed_unprocessed_pseudogene Interval_26421 chr11 57760992 57761213 + 0 NA intron (ENSMUSG00000020520.14, intron 4 of 11) protein_coding-intron (ENSMUSG00000020520.14, intron 4 of 11) -3325 ENSMUSG00000065806.1 ENSMUSG00000065806 ENSMUST00000083872 n-R5s69 rRNA Interval_125646 chr5 73011838 73012058 + 0 NA exon (ENSMUSG00000029219.10, exon 3 of 3) protein_coding-exon (ENSMUSG00000029219.10, exon 3 of 3) -1580 ENSMUSG00000081849.2 ENSMUSG00000081849 ENSMUST00000121417 Gm15847 unitary_pseudogene Interval_112367 chr4 40861058 40861911 + 0 NA Intergenic Intergenic -7479 ENSMUSG00000028413.13 ENSMUSG00000028413 ENSMUST00000108096 B4galt1 protein_coding Interval_154813 chr8 23624632 23624930 + 0 NA Intergenic Intergenic -44880 ENSMUSG00000037492.16 ENSMUSG00000037492 ENSMUST00000146774 Zmat4 protein_coding Interval_116204 chr4 108664359 108665505 + 0 NA intron (ENSMUSG00000034557.14, intron 12 of 17) protein_coding-intron (ENSMUSG00000034557.14, intron 10 of 15) -27491 ENSMUSG00000091985.1 ENSMUSG00000091985 ENSMUST00000170933 Gm17354 lincRNA Interval_118371 chr4 130949523 130950238 + 0 NA intron (ENSMUSG00000040533.7, intron 2 of 7) protein_coding-intron (ENSMUSG00000040533.7, intron 2 of 7) 5495 ENSMUSG00000040533.7 ENSMUSG00000040533 ENSMUST00000102576 Matn1 protein_coding Interval_159780 chr8 102986505 102987263 + 0 NA Intergenic Intergenic -121086 ENSMUSG00000063696.7 ENSMUSG00000063696 ENSMUST00000076373 Gm8730 processed_pseudogene Interval_148740 chr7 84884684 84885231 + 0 NA Intergenic Intergenic 5402 ENSMUSG00000092425.1 ENSMUSG00000092425 ENSMUST00000173536 Gm8018 unprocessed_pseudogene Interval_25109 chr11 44162398 44162607 + 0 NA Intergenic Intergenic 104707 ENSMUSG00000086738.1 ENSMUSG00000086738 ENSMUST00000145584 Gm12154 lincRNA Interval_71457 chr17 23867748 23868902 + 0 NA exon (ENSMUSG00000024116.6, exon 2 of 6) protein_coding-exon (ENSMUSG00000024116.6, exon 2 of 6) -2919 ENSMUSG00000024116.6 ENSMUSG00000024116 ENSMUST00000235013 Prss21 protein_coding Interval_76684 chr17 83469452 83470208 + 0 NA intron (ENSMUSG00000032624.16, intron 4 of 6) protein_coding-intron (ENSMUSG00000032624.16, intron 17 of 20) 13529 ENSMUSG00000032624.16 ENSMUSG00000032624 ENSMUST00000235121 Eml4 protein_coding Interval_99859 chr2 165355745 165355947 + 0 NA intron (ENSMUSG00000056824.15, intron 5 of 5) protein_coding-intron (ENSMUSG00000056824.15, intron 3 of 3) 12877 ENSMUSG00000056824.15 ENSMUSG00000056824 ENSMUST00000141140 Zfp663 protein_coding Interval_22257 chr11 8302209 8303419 + 0 NA Intergenic Intergenic 81039 ENSMUSG00000083553.1 ENSMUSG00000083553 ENSMUST00000117240 Gm11989 processed_pseudogene Interval_67323 chr16 46100671 46102227 + 0 NA intron (ENSMUSG00000022657.9, intron 3 of 14) protein_coding-intron (ENSMUSG00000022657.9, intron 3 of 14) 14974 ENSMUSG00000118485.1 ENSMUSG00000118485 ENSMUST00000238776 Gm50487 processed_pseudogene Interval_119011 chr4 134996848 134997090 + 0 NA Intergenic Intergenic 66067 ENSMUSG00000028821.8 ENSMUSG00000028821 ENSMUST00000144037 Syf2 protein_coding Interval_11506 chr1 182318340 182318582 + 0 NA promoter-TSS (ENSMUSG00000047539.9) protein_coding-promoter-TSS (ENSMUSG00000047539.9) 23110 ENSMUSG00000047539.9 ENSMUSG00000047539 ENSMUST00000194213 Fbxo28 protein_coding Interval_19087 chr10 94400226 94401410 + 0 NA intron (ENSMUSG00000020023.18, intron 1 of 1) protein_coding-intron (ENSMUSG00000020023.18, intron 1 of 2) -8073 ENSMUSG00000085409.1 ENSMUSG00000085409 ENSMUST00000155180 Gm16155 sense_intronic Interval_140656 chr6 120337018 120337239 + 0 NA TTS (ENSMUSG00000030177.14) protein_coding-TTS (ENSMUSG00000030177.14) 20239 ENSMUSG00000030177.14 ENSMUSG00000030177 ENSMUST00000153435 Ccdc77 protein_coding Interval_48917 chr13 104816275 104817844 + 0 NA promoter-TSS (ENSMUSG00000021715.12) protein_coding-promoter-TSS (ENSMUSG00000021715.12) 83 ENSMUSG00000021715.12 ENSMUSG00000021715 ENSMUST00000154165 Cwc27 protein_coding Interval_19482 chr10 100031151 100031750 + 0 NA intron (ENSMUSG00000019966.18, intron 1 of 3) protein_coding-intron (ENSMUSG00000019966.18, intron 1 of 8) 42829 ENSMUSG00000112299.1 ENSMUSG00000112299 ENSMUST00000219489 Gm17870 processed_pseudogene Interval_48431 chr13 98964200 98964460 + 0 NA Intergenic Intergenic -9048 ENSMUSG00000114873.1 ENSMUSG00000114873 ENSMUST00000224868 Gm47052 processed_pseudogene Interval_76032 chr17 74482980 74483594 + 0 NA Intergenic Intergenic -8557 ENSMUSG00000024072.9 ENSMUSG00000024072 ENSMUST00000234853 Yipf4 protein_coding Interval_12672 chr10 4253711 4254947 + 0 NA Intergenic Intergenic -41215 ENSMUSG00000111266.1 ENSMUSG00000111266 ENSMUST00000213553 Gm30570 lincRNA Interval_5887 chr1 92962321 92962754 + 0 NA intron (ENSMUSG00000026271.15, intron 2 of 2) protein_coding-intron (ENSMUSG00000026271.15, intron 1 of 1) 6373 ENSMUSG00000026271.15 ENSMUSG00000026271 ENSMUST00000169198 Gpr35 protein_coding Interval_39667 chr12 91935942 91936143 + 0 NA Intergenic Intergenic 33535 ENSMUSG00000098159.1 ENSMUSG00000098159 ENSMUST00000183260 Gm21614 processed_pseudogene Interval_83939 chr19 5725937 5726467 + 0 NA promoter-TSS (ENSMUSG00000024937.15) protein_coding-promoter-TSS (ENSMUSG00000024937.15) -1004 ENSMUSG00000089766.1 ENSMUSG00000089766 ENSMUST00000162407 Gm16538 antisense Interval_68332 chr16 73376438 73376741 + 0 NA intron (ENSMUSG00000116976.1, intron 3 of 5) processed_transcript-intron (ENSMUSG00000116976.1, intron 1 of 4) 46370 ENSMUSG00000064830.1 ENSMUSG00000064830 ENSMUST00000082896 Gm25699 snRNA Interval_104522 chr3 67409536 67409746 + 0 NA Intergenic Intergenic -20475 ENSMUSG00000027774.16 ENSMUSG00000027774 ENSMUST00000160529 Gfm1 protein_coding Interval_159447 chr8 94801686 94801942 + 0 NA Intergenic Intergenic -8639 ENSMUSG00000031780.2 ENSMUSG00000031780 ENSMUST00000034232 Ccl17 protein_coding Interval_86918 chr19 44874969 44875921 + 0 NA Intergenic Intergenic 24436 ENSMUSG00000117967.1 ENSMUSG00000117967 ENSMUST00000236477 Gm5246 processed_pseudogene Interval_57660 chr15 14066146 14067889 + 0 NA Intergenic Intergenic -75938 ENSMUSG00000115551.1 ENSMUSG00000115551 ENSMUST00000228924 Gm49115 processed_pseudogene Interval_104124 chr3 58843211 58843838 + 0 NA TTS (ENSMUSG00000043850.15) protein_coding-TTS (ENSMUSG00000043850.15) 22273 ENSMUSG00000043850.15 ENSMUSG00000043850 ENSMUST00000161419 Clrn1 protein_coding Interval_141173 chr6 125410530 125413476 + 0 NA Intergenic Intergenic -31210 ENSMUSG00000038167.6 ENSMUSG00000038167 ENSMUST00000042647 Plekhg6 protein_coding Interval_115033 chr4 88752812 88753400 + 0 NA intron (ENSMUSG00000086074.2, intron 2 of 3) antisense-intron (ENSMUSG00000086074.2, intron 2 of 3) -1365 ENSMUSG00000117268.1 ENSMUSG00000117268 ENSMUST00000233825 Gm49884 unprocessed_pseudogene Interval_127771 chr5 107646574 107646779 + 0 NA intron (ENSMUSG00000033773.14, intron 11 of 12) protein_coding-intron (ENSMUSG00000033773.14, intron 11 of 12) -12826 ENSMUSG00000085900.1 ENSMUSG00000085900 ENSMUST00000149156 A930041C12Rik antisense Interval_59725 chr15 58919614 58919910 + 0 NA intron (ENSMUSG00000050891.10, intron 6 of 11) protein_coding-intron (ENSMUSG00000050891.10, intron 6 of 11) -3584 ENSMUSG00000050891.10 ENSMUSG00000050891 ENSMUST00000228230 Tatdn1 protein_coding Interval_13865 chr10 24066317 24068079 + 0 NA TTS (ENSMUSG00000118542.1) unprocessed_pseudogene-TTS (ENSMUSG00000118542.1) 544 ENSMUSG00000118542.1 ENSMUSG00000118542 ENSMUST00000238794 AC117671.1 unprocessed_pseudogene Interval_162899 chr9 12098784 12099042 + 0 NA Intergenic Intergenic -120664 ENSMUSG00000111111.1 ENSMUSG00000111111 ENSMUST00000217391 Gm47037 TEC Interval_112233 chr4 37224021 37225383 + 0 NA Intergenic Intergenic 14473 ENSMUSG00000082732.1 ENSMUSG00000082732 ENSMUST00000119466 Rpl23a-ps6 processed_pseudogene Interval_159918 chr8 105177247 105177696 + 0 NA intron (ENSMUSG00000031885.14, intron 1 of 2) protein_coding-intron (ENSMUSG00000031885.14, intron 2 of 5) 4975 ENSMUSG00000064494.1 ENSMUSG00000064494 ENSMUST00000082560 Gm22063 snRNA Interval_152942 chr7 139949675 139952456 + 0 NA intron (ENSMUSG00000086742.8, intron 2 of 4) processed_transcript-intron (ENSMUSG00000086742.8, intron 2 of 4) 6557 ENSMUSG00000105165.1 ENSMUSG00000105165 ENSMUST00000200604 Mir7686 miRNA Interval_171676 chr9 120091952 120092478 + 0 NA intron (ENSMUSG00000042262.5, intron 1 of 1) protein_coding-intron (ENSMUSG00000042262.5, intron 1 of 1) 101 ENSMUSG00000042262.5 ENSMUSG00000042262 ENSMUST00000048777 Ccr8 protein_coding Interval_130891 chr5 133655638 133655860 + 0 NA Intergenic Intergenic -57343 ENSMUSG00000105227.1 ENSMUSG00000105227 ENSMUST00000196125 Gm36667 lincRNA Interval_100384 chr2 168741186 168742857 + 0 NA promoter-TSS (ENSMUSG00000027546.15) protein_coding-promoter-TSS (ENSMUSG00000027546.15) -57 ENSMUSG00000027546.15 ENSMUSG00000027546 ENSMUST00000156555 Atp9a protein_coding Interval_73370 chr17 36825703 36826291 + 0 NA Intergenic Intergenic -11144 ENSMUSG00000024457.16 ENSMUSG00000024457 ENSMUST00000156872 Trim26 protein_coding Interval_134119 chr6 20847498 20847731 + 0 NA Intergenic Intergenic 123376 ENSMUSG00000106763.1 ENSMUSG00000106763 ENSMUST00000201133 Gm19102 processed_pseudogene Interval_148478 chr7 81598948 81600471 + 0 NA TTS (ENSMUSG00000025813.14) protein_coding-TTS (ENSMUSG00000025813.14) 8815 ENSMUSG00000109428.1 ENSMUSG00000109428 ENSMUST00000208537 Gm45698 TEC Interval_115518 chr4 100047200 100047615 + 0 NA Intergenic Intergenic -5113 ENSMUSG00000085142.1 ENSMUSG00000085142 ENSMUST00000123258 Gm12702 lincRNA Interval_109814 chr3 148003887 148004409 + 0 NA Intergenic Intergenic -126096 ENSMUSG00000106285.1 ENSMUSG00000106285 ENSMUST00000196226 Gm43574 processed_transcript Interval_107263 chr3 105052391 105053587 + 0 NA promoter-TSS (ENSMUSG00000062127.11) protein_coding-promoter-TSS (ENSMUSG00000062127.11) -64 ENSMUSG00000062127.11 ENSMUSG00000062127 ENSMUST00000199002 Cttnbp2nl protein_coding Interval_33815 chr11 118714768 118715198 + 0 NA intron (ENSMUSG00000025576.17, intron 2 of 14) protein_coding-intron (ENSMUSG00000025576.17, intron 2 of 14) -76389 ENSMUSG00000085059.1 ENSMUSG00000085059 ENSMUST00000146016 Gm11750 lincRNA Interval_8066 chr1 135532209 135532722 + 0 NA exon (ENSMUSG00000009418.16, exon 3 of 30) protein_coding-exon (ENSMUSG00000009418.16, exon 3 of 30) -7127 ENSMUSG00000104524.1 ENSMUSG00000104524 ENSMUST00000192904 Gm37333 TEC Interval_99336 chr2 159290985 159291744 + 0 NA Intergenic Intergenic 152003 ENSMUSG00000077188.1 ENSMUSG00000077188 ENSMUST00000104000 Gm25090 snoRNA Interval_26404 chr11 57664869 57665438 + 0 NA intron (ENSMUSG00000020520.14, intron 1 of 2) protein_coding-intron (ENSMUSG00000020520.14, intron 1 of 11) -7327 ENSMUSG00000086933.1 ENSMUSG00000086933 ENSMUST00000143009 4933426K07Rik antisense Interval_86914 chr19 44834922 44836896 + 0 NA promoter-TSS (ENSMUSG00000092369.1) antisense-promoter-TSS (ENSMUSG00000092369.1) 29 ENSMUSG00000092369.1 ENSMUSG00000092369 ENSMUST00000174082 1700039E22Rik antisense Interval_145400 chr7 34480442 34481335 + 0 NA intron (ENSMUSG00000085124.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000085124.1, intron 1 of 2) 15177 ENSMUSG00000081863.1 ENSMUSG00000081863 ENSMUST00000122458 Gm12780 processed_pseudogene Interval_27514 chr11 68347857 68349011 + 0 NA intron (ENSMUSG00000020902.12, intron 3 of 7) protein_coding-intron (ENSMUSG00000020902.12, intron 2 of 6) 38578 ENSMUSG00000020902.12 ENSMUSG00000020902 ENSMUST00000135141 Ntn1 protein_coding Interval_126667 chr5 91933549 91933715 + 0 NA Intergenic Intergenic -20229 ENSMUSG00000107301.1 ENSMUSG00000107301 ENSMUST00000202249 Gm43688 lincRNA Interval_32141 chr11 105518470 105518743 + 0 NA Intergenic Intergenic -79019 ENSMUSG00000080681.1 ENSMUSG00000080681 ENSMUST00000117031 Gm23990 miRNA Interval_44339 chr13 43864342 43865396 + 0 NA exon (ENSMUSG00000113780.1, exon 1 of 4) lincRNA-exon (ENSMUSG00000113780.1, exon 1 of 4) 200 ENSMUSG00000113780.1 ENSMUSG00000113780 ENSMUST00000220827 Gm33195 lincRNA Interval_163962 chr9 29859672 29859986 + 0 NA intron (ENSMUSG00000059974.10, intron 1 of 2) protein_coding-intron (ENSMUSG00000059974.10, intron 1 of 7) 203890 ENSMUSG00000111175.1 ENSMUSG00000111175 ENSMUST00000214849 Gm19640 processed_pseudogene Interval_16241 chr10 61657016 61657354 + 0 NA intron (ENSMUSG00000020089.8, intron 2 of 10) protein_coding-intron (ENSMUSG00000020089.8, intron 2 of 10) -6504 ENSMUSG00000020089.8 ENSMUSG00000020089 ENSMUST00000162028 Ppa1 protein_coding Interval_165242 chr9 45740442 45740737 + 0 NA exon (ENSMUSG00000032087.11, exon 21 of 33) protein_coding-exon (ENSMUSG00000032087.11, exon 21 of 33) 53677 ENSMUSG00000043987.18 ENSMUSG00000043987 ENSMUST00000214868 Cep164 protein_coding Interval_99556 chr2 163150945 163151544 + 0 NA Intergenic Intergenic 4862 ENSMUSG00000086036.1 ENSMUSG00000086036 ENSMUST00000136371 Gm14254 lincRNA Interval_75772 chr17 71229516 71230301 + 0 NA intron (ENSMUSG00000024052.17, intron 6 of 7) protein_coding-intron (ENSMUSG00000024052.17, intron 5 of 19) 46352 ENSMUSG00000024052.17 ENSMUSG00000024052 ENSMUST00000125665 Lpin2 protein_coding Interval_103537 chr3 47702033 47702243 + 0 NA Intergenic Intergenic -241800 ENSMUSG00000103798.1 ENSMUSG00000103798 ENSMUST00000193328 Gm2229 processed_pseudogene Interval_59191 chr15 47295497 47296570 + 0 NA Intergenic Intergenic -125882 ENSMUSG00000115534.1 ENSMUSG00000115534 ENSMUST00000227510 Gm7508 processed_pseudogene Interval_43827 chr13 37436252 37437016 + 0 NA Intergenic Intergenic -1485 ENSMUSG00000100760.1 ENSMUSG00000100760 ENSMUST00000190684 Gm4035 lincRNA Interval_55476 chr14 87940868 87941353 + 0 NA Intergenic Intergenic 49756 ENSMUSG00000115452.1 ENSMUSG00000115452 ENSMUST00000226882 Gm18812 transcribed_processed_pseudogene Interval_27123 chr11 63135469 63136100 + 0 NA intron (ENSMUSG00000018217.12, intron 3 of 4) protein_coding-intron (ENSMUSG00000018217.12, intron 3 of 4) 2981 ENSMUSG00000018217.12 ENSMUSG00000018217 ENSMUST00000108700 Pmp22 protein_coding Interval_40517 chr12 105439527 105440443 + 0 NA Intergenic Intergenic -13871 ENSMUSG00000094910.1 ENSMUSG00000094910 ENSMUST00000178224 D430019H16Rik protein_coding Interval_166965 chr9 64188236 64188855 + 0 NA promoter-TSS (ENSMUSG00000004936.8) protein_coding-promoter-TSS (ENSMUSG00000004936.8) -289 ENSMUSG00000004936.8 ENSMUSG00000004936 ENSMUST00000152535 Map2k1 protein_coding Interval_120685 chr4 150098899 150100119 + 0 NA intron (ENSMUSG00000047875.6, intron 2 of 3) protein_coding-intron (ENSMUSG00000047875.6, intron 2 of 3) 12144 ENSMUSG00000047875.6 ENSMUSG00000047875 ENSMUST00000094451 Gpr157 protein_coding Interval_22860 chr11 16819821 16820039 + 0 NA intron (ENSMUSG00000085091.1, intron 1 of 1) protein_coding-intron (ENSMUSG00000020122.16, intron 1 of 27) 10772 ENSMUSG00000085091.1 ENSMUSG00000085091 ENSMUST00000150329 Egfros antisense Interval_107126 chr3 103743933 103744970 + 0 NA TTS (ENSMUSG00000008730.17) protein_coding-TTS (ENSMUSG00000008730.17) 5085 ENSMUSG00000078620.1 ENSMUSG00000078620 ENSMUST00000106852 Gm10964 protein_coding Interval_10525 chr1 171470203 171472139 + 0 NA Intergenic Intergenic 8321 ENSMUSG00000038235.4 ENSMUSG00000038235 ENSMUST00000155913 F11r protein_coding Interval_110152 chr3 153806019 153807221 + 0 NA Intergenic Intergenic -14533 ENSMUSG00000062046.1 ENSMUSG00000062046 ENSMUST00000081193 5730460C07Rik lincRNA Interval_88799 chr2 11137871 11140212 + 0 NA Intergenic Intergenic -38779 ENSMUSG00000083900.2 ENSMUSG00000083900 ENSMUST00000121757 Gm13294 processed_pseudogene Interval_117372 chr4 123305408 123306504 + 0 NA Intergenic Intergenic 1261 ENSMUSG00000118657.1 ENSMUSG00000118657 ENSMUST00000239455 AL606917.1 unprocessed_pseudogene Interval_89053 chr2 15068293 15068940 + 0 NA intron (ENSMUSG00000017418.14, intron 2 of 5) protein_coding-intron (ENSMUSG00000017418.14, intron 2 of 5) 11903 ENSMUSG00000102258.1 ENSMUSG00000102258 ENSMUST00000195881 Gm38257 TEC Interval_10624 chr1 172297843 172298113 + 0 NA promoter-TSS (ENSMUSG00000007097.14) protein_coding-promoter-TSS (ENSMUSG00000007097.14) -20782 ENSMUSG00000038034.15 ENSMUSG00000038034 ENSMUST00000150598 Igsf8 protein_coding Interval_123277 chr5 31076354 31077176 + 0 NA TTS (ENSMUSG00000013629.16) protein_coding-TTS (ENSMUSG00000013629.16) 2648 ENSMUSG00000013629.16 ENSMUSG00000013629 ENSMUST00000200917 Cad protein_coding Interval_39247 chr12 86164661 86165005 + 0 NA Intergenic Intergenic -4508 ENSMUSG00000097543.1 ENSMUSG00000097543 ENSMUST00000181667 Gm805 lincRNA Interval_62603 chr15 95302617 95303535 + 0 NA intron (ENSMUSG00000022454.17, intron 13 of 20) protein_coding-intron (ENSMUSG00000022454.17, intron 14 of 20) -140682 ENSMUSG00000100603.6 ENSMUSG00000100603 ENSMUST00000185302 1700129L04Rik sense_intronic Interval_146616 chr7 48305068 48305278 + 0 NA Intergenic Intergenic -6131 ENSMUSG00000099620.1 ENSMUSG00000099620 ENSMUST00000188191 Mrgprb13 unprocessed_pseudogene Interval_152342 chr7 132047027 132047219 + 0 NA intron (ENSMUSG00000030862.13, intron 13 of 13) protein_coding-intron (ENSMUSG00000030862.13, intron 13 of 13) 1995 ENSMUSG00000030862.13 ENSMUSG00000030862 ENSMUST00000136188 Cpxm2 protein_coding Interval_125076 chr5 64289098 64289757 + 0 NA intron (ENSMUSG00000029174.18, intron 13 of 20) protein_coding-intron (ENSMUSG00000029174.18, intron 14 of 21) -30829 ENSMUSG00000083100.1 ENSMUSG00000083100 ENSMUST00000121819 Gm6044 processed_pseudogene Interval_85330 chr19 24859330 24859670 + 0 NA intron (ENSMUSG00000041731.13, intron 1 of 3) protein_coding-intron (ENSMUSG00000041731.13, intron 1 of 10) 2187 ENSMUSG00000041731.13 ENSMUSG00000041731 ENSMUST00000129127 Pgm5 protein_coding Interval_38919 chr12 83805413 83805606 + 0 NA intron (ENSMUSG00000021224.15, intron 8 of 8) protein_coding-intron (ENSMUSG00000021224.15, intron 5 of 8) -17946 ENSMUSG00000114150.1 ENSMUSG00000114150 ENSMUST00000221695 Gm46367 processed_transcript Interval_27741 chr11 69741267 69742024 + 0 NA TTS (ENSMUSG00000005198.15) protein_coding-TTS (ENSMUSG00000005198.15) -4297 ENSMUSG00000005198.15 ENSMUSG00000005198 ENSMUST00000151586 Polr2a protein_coding Interval_166236 chr9 57687811 57688395 + 0 NA intron (ENSMUSG00000032315.6, intron 1 of 6) protein_coding-intron (ENSMUSG00000032315.6, intron 1 of 6) 175 ENSMUSG00000032315.6 ENSMUSG00000032315 ENSMUST00000034865 Cyp1a1 protein_coding Interval_137862 chr6 83011483 83012157 + 0 NA intron (ENSMUSG00000030041.9, intron 7 of 9) protein_coding-intron (ENSMUSG00000030041.9, intron 7 of 9) -14518 ENSMUSG00000030041.9 ENSMUSG00000030041 ENSMUST00000144906 M1ap protein_coding Interval_34277 chr11 121924204 121925892 + 0 NA Intergenic Intergenic -38080 ENSMUSG00000082947.1 ENSMUSG00000082947 ENSMUST00000120180 Gm12587 processed_pseudogene Interval_37278 chr12 64520685 64521523 + 0 NA Intergenic Intergenic -46414 ENSMUSG00000043060.8 ENSMUSG00000043060 ENSMUST00000059833 Fscb protein_coding Interval_51970 chr14 34348807 34349817 + 0 NA Intergenic Intergenic 4031 ENSMUSG00000115431.1 ENSMUSG00000115431 ENSMUST00000226608 Gm3219 processed_pseudogene Interval_29668 chr11 85917664 85919381 + 0 NA Intergenic Intergenic -31973 ENSMUSG00000081632.1 ENSMUSG00000081632 ENSMUST00000118790 Gm11443 processed_pseudogene Interval_73229 chr17 35681861 35682624 + 0 NA TTS (ENSMUSG00000003534.17) protein_coding-TTS (ENSMUSG00000003534.17) -13482 ENSMUSG00000001524.14 ENSMUSG00000001524 ENSMUST00000159852 Gtf2h4 protein_coding Interval_23012 chr11 18930774 18931517 + 0 NA intron (ENSMUSG00000020160.18, intron 6 of 9) protein_coding-intron (ENSMUSG00000020160.18, intron 8 of 12) -41305 ENSMUSG00000104244.1 ENSMUSG00000104244 ENSMUST00000195805 2900018N21Rik TEC Interval_92218 chr2 56934424 56934687 + 0 NA Intergenic Intergenic -145193 ENSMUSG00000082578.1 ENSMUSG00000082578 ENSMUST00000117926 Gm13527 processed_pseudogene Interval_158351 chr8 82401730 82403422 + 0 NA promoter-TSS (ENSMUSG00000031712.10) protein_coding-promoter-TSS (ENSMUSG00000031712.10) -6515 ENSMUSG00000065182.1 ENSMUSG00000065182 ENSMUST00000083248 Gm25138 snoRNA Interval_144730 chr7 27825249 27825517 + 0 NA Intergenic Intergenic -13224 ENSMUSG00000078779.4 ENSMUSG00000078779 ENSMUST00000108331 Zfp59 protein_coding Interval_151790 chr7 126684106 126684391 + 0 NA Intergenic Intergenic 5786 ENSMUSG00000082922.3 ENSMUSG00000082922 ENSMUST00000122029 Gm6939 transcribed_unprocessed_pseudogene Interval_148743 chr7 85023592 85024794 + 0 NA Intergenic Intergenic -9834 ENSMUSG00000092530.1 ENSMUSG00000092530 ENSMUST00000173690 Vmn2r-ps64 unprocessed_pseudogene Interval_17112 chr10 71401423 71401718 + 0 NA intron (ENSMUSG00000060733.13, intron 1 of 2) protein_coding-intron (ENSMUSG00000060733.13, intron 1 of 2) 53734 ENSMUSG00000060733.13 ENSMUSG00000060733 ENSMUST00000145521 Ipmk protein_coding Interval_129076 chr5 117268910 117269367 + 0 NA intron (ENSMUSG00000061288.13, intron 19 of 20) protein_coding-intron (ENSMUSG00000061288.13, intron 18 of 19) 18430 ENSMUSG00000032959.12 ENSMUSG00000032959 ENSMUST00000139913 Pebp1 protein_coding Interval_158365 chr8 83026289 83026614 + 0 NA intron (ENSMUSG00000047747.10, intron 4 of 6) protein_coding-intron (ENSMUSG00000047747.10, intron 4 of 6) 60506 ENSMUSG00000109876.1 ENSMUSG00000109876 ENSMUST00000211485 Gm45449 antisense Interval_101939 chr3 12531954 12532352 + 0 NA Intergenic Intergenic -99107 ENSMUSG00000104177.1 ENSMUSG00000104177 ENSMUST00000194635 Gm2429 processed_pseudogene Interval_107659 chr3 109526029 109527287 + 0 NA intron (ENSMUSG00000033721.16, intron 13 of 16) protein_coding-intron (ENSMUSG00000033721.16, intron 13 of 26) -120866 ENSMUSG00000033721.16 ENSMUSG00000033721 ENSMUST00000148866 Vav3 protein_coding Interval_128659 chr5 114567091 114568204 + 0 NA promoter-TSS (ENSMUSG00000041930.7) protein_coding-promoter-TSS (ENSMUSG00000041930.7) -370 ENSMUSG00000041930.7 ENSMUSG00000041930 ENSMUST00000130983 Fam222a protein_coding Interval_42954 chr13 21901073 21901476 + 0 NA Intergenic Intergenic -1882 ENSMUSG00000081576.1 ENSMUSG00000081576 ENSMUST00000121524 Gm11279 processed_pseudogene Interval_107489 chr3 108060910 108061910 + 0 NA Intergenic Intergenic -16551 ENSMUSG00000027890.17 ENSMUSG00000027890 ENSMUST00000106670 Gstm4 protein_coding Interval_49366 chr13 111483616 111483942 + 0 NA intron (ENSMUSG00000116016.1, intron 1 of 7) protein_coding-intron (ENSMUSG00000032745.18, intron 2 of 12) -30356 ENSMUSG00000032745.18 ENSMUSG00000032745 ENSMUST00000129638 Gpbp1 protein_coding Interval_112289 chr4 40134689 40135232 + 0 NA Intergenic Intergenic -17727 ENSMUSG00000081352.1 ENSMUSG00000081352 ENSMUST00000117696 Gm12389 processed_pseudogene Interval_45446 chr13 55209188 55212884 + 0 NA promoter-TSS (ENSMUSG00000021488.8) protein_coding-promoter-TSS (ENSMUSG00000021488.8) -1034 ENSMUSG00000021488.8 ENSMUSG00000021488 ENSMUST00000225405 Nsd1 protein_coding Interval_161609 chr8 121556217 121556611 + 0 NA intron (ENSMUSG00000052934.14, intron 1 of 3) protein_coding-intron (ENSMUSG00000052934.14, intron 5 of 8) 12026 ENSMUSG00000097424.2 ENSMUSG00000097424 ENSMUST00000181679 1700030M09Rik bidirectional_promoter_lncRNA Interval_36855 chr12 54695409 54697608 + 0 NA promoter-TSS (ENSMUSG00000054302.15) protein_coding-promoter-TSS (ENSMUSG00000054302.15) -274 ENSMUSG00000096349.1 ENSMUSG00000096349 ENSMUST00000179621 Gm22513 snRNA Interval_79729 chr18 34770976 34771370 + 0 NA exon (ENSMUSG00000034300.17, exon 5 of 5) protein_coding-exon (ENSMUSG00000034300.17, exon 5 of 5) 11600 ENSMUSG00000034300.17 ENSMUSG00000034300 ENSMUST00000235929 Fam53c protein_coding Interval_85587 chr19 28855703 28856610 + 0 NA intron (ENSMUSG00000024935.11, intron 1 of 1) protein_coding-intron (ENSMUSG00000024935.11, intron 1 of 11) 7551 ENSMUSG00000089993.1 ENSMUSG00000089993 ENSMUST00000161562 Gm5822 processed_pseudogene Interval_123337 chr5 31557786 31558006 + 0 NA TTS (ENSMUSG00000029141.16) protein_coding-TTS (ENSMUSG00000029141.16) 11176 ENSMUSG00000107352.1 ENSMUSG00000107352 ENSMUST00000200956 Gm43660 lincRNA Interval_124892 chr5 59708710 59708960 + 0 NA Intergenic Intergenic -69077 ENSMUSG00000104889.1 ENSMUSG00000104889 ENSMUST00000196579 Gm43043 processed_pseudogene Interval_33441 chr11 116554419 116555594 + 0 NA intron (ENSMUSG00000020802.8, intron 1 of 17) protein_coding-intron (ENSMUSG00000020802.8, intron 1 of 17) 4588 ENSMUSG00000083314.1 ENSMUSG00000083314 ENSMUST00000119903 Gm11742 processed_pseudogene Interval_171748 chr9 120690378 120692116 + 0 NA Intergenic Intergenic 14990 ENSMUSG00000111679.1 ENSMUSG00000111679 ENSMUST00000213340 Gm47063 TEC Interval_86800 chr19 43949178 43950025 + 0 NA Intergenic Intergenic 17285 ENSMUSG00000084641.1 ENSMUSG00000084641 ENSMUST00000122692 n-R5s21 rRNA Interval_155598 chr8 34979002 34979284 + 0 NA intron (ENSMUSG00000109717.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000109717.1, intron 1 of 2) 731 ENSMUSG00000109717.1 ENSMUSG00000109717 ENSMUST00000209512 Gm34368 lincRNA Interval_169438 chr9 97304026 97304220 + 0 NA Intergenic Intergenic 14937 ENSMUSG00000104167.1 ENSMUSG00000104167 ENSMUST00000192385 A030012G06Rik TEC Interval_72534 chr17 30555652 30555969 + 0 NA intron (ENSMUSG00000118341.1, intron 1 of 6) protein_coding-intron (ENSMUSG00000062202.14, intron 1 of 11) -20658 ENSMUSG00000117725.1 ENSMUSG00000117725 ENSMUST00000237645 Gm50240 antisense Interval_11225 chr1 180289252 180289582 + 0 NA Intergenic Intergenic 32988 ENSMUSG00000102923.1 ENSMUSG00000102923 ENSMUST00000192164 Gm31728 antisense Interval_16954 chr10 70109778 70110955 + 0 NA intron (ENSMUSG00000048701.13, intron 1 of 8) protein_coding-intron (ENSMUSG00000048701.13, intron 1 of 8) -64645 ENSMUSG00000048701.13 ENSMUSG00000048701 ENSMUST00000135607 Ccdc6 protein_coding Interval_26858 chr11 61128750 61129713 + 0 NA intron (ENSMUSG00000010142.12, intron 2 of 5) protein_coding-intron (ENSMUSG00000010142.12, intron 1 of 4) 2076 ENSMUSG00000080912.1 ENSMUSG00000080912 ENSMUST00000122273 Gm12269 processed_pseudogene Interval_148215 chr7 79928468 79928905 + 0 NA intron (ENSMUSG00000039043.5, intron 3 of 5) protein_coding-intron (ENSMUSG00000039043.5, intron 3 of 5) -3819 ENSMUSG00000108350.1 ENSMUSG00000108350 ENSMUST00000206403 Gm44950 TEC Interval_157700 chr8 72375365 72376303 + 0 NA intron (ENSMUSG00000006276.10, intron 16 of 21) protein_coding-intron (ENSMUSG00000006276.10, intron 16 of 23) 45604 ENSMUSG00000006276.10 ENSMUSG00000006276 ENSMUST00000211977 Eps15l1 protein_coding Interval_122478 chr5 23355273 23355555 + 0 NA Intergenic Intergenic -8140 ENSMUSG00000105254.1 ENSMUSG00000105254 ENSMUST00000199688 Gm42951 lincRNA Interval_167484 chr9 69868931 69869137 + 0 NA Intergenic Intergenic -75883 ENSMUSG00000111286.1 ENSMUSG00000111286 ENSMUST00000216018 Gm18745 processed_pseudogene Interval_80205 chr18 38240961 38241759 + 0 NA intron (ENSMUSG00000097080.8, intron 1 of 3) lincRNA-intron (ENSMUSG00000097080.8, intron 1 of 1) -3468 ENSMUSG00000066475.6 ENSMUSG00000066475 ENSMUST00000085340 Gm10268 processed_pseudogene Interval_10976 chr1 177714254 177714534 + 0 NA Intergenic Intergenic -15420 ENSMUSG00000015962.5 ENSMUSG00000015962 ENSMUST00000016106 1700016C15Rik protein_coding Interval_93167 chr2 70797153 70798372 + 0 NA intron (ENSMUSG00000041997.16, intron 1 of 21) protein_coding-intron (ENSMUSG00000041997.16, intron 1 of 19) -58927 ENSMUSG00000082303.1 ENSMUSG00000082303 ENSMUST00000120668 Gm13633 processed_pseudogene Interval_132199 chr5 143297480 143298649 + 0 NA Intergenic Intergenic -4441 ENSMUSG00000093910.2 ENSMUSG00000093910 ENSMUST00000180336 Zfp853 protein_coding Interval_36934 chr12 55455720 55457005 + 0 NA Intergenic Intergenic 35448 ENSMUSG00000021025.8 ENSMUSG00000021025 ENSMUST00000219869 Nfkbia protein_coding Interval_134012 chr6 17703513 17704273 + 0 NA TTS (ENSMUSG00000098988.1) misc_RNA-TTS (ENSMUSG00000098988.1) 662 ENSMUSG00000098988.1 ENSMUSG00000098988 ENSMUST00000184021 Gm28008 misc_RNA Interval_48307 chr13 97997413 97998099 + 0 NA intron (ENSMUSG00000021662.11, intron 9 of 34) protein_coding-intron (ENSMUSG00000021662.11, intron 9 of 35) 18661 ENSMUSG00000021662.11 ENSMUSG00000021662 ENSMUST00000224866 Arhgef28 protein_coding Interval_53923 chr14 63435778 63436742 + 0 NA promoter-TSS (ENSMUSG00000035095.11) protein_coding-promoter-TSS (ENSMUSG00000035095.11) -149 ENSMUSG00000035095.11 ENSMUSG00000035095 ENSMUST00000128313 Fam167a protein_coding Interval_27928 chr11 70942276 70943053 + 0 NA TTS (ENSMUSG00000040667.11) protein_coding-TTS (ENSMUSG00000040667.11) 14249 ENSMUSG00000040667.11 ENSMUSG00000040667 ENSMUST00000145336 Nup88 protein_coding Interval_75517 chr17 67715580 67716287 + 0 NA intron (ENSMUSG00000032796.8, intron 1 of 15) protein_coding-intron (ENSMUSG00000032796.8, intron 1 of 62) 18668 ENSMUSG00000032796.8 ENSMUSG00000032796 ENSMUST00000233224 Lama1 protein_coding Interval_127689 chr5 106671583 106671976 + 0 NA intron (ENSMUSG00000049606.16, intron 1 of 6) protein_coding-intron (ENSMUSG00000049606.16, intron 1 of 6) 1780 ENSMUSG00000088602.2 ENSMUSG00000088602 ENSMUST00000157977 Gm24191 snRNA Interval_108464 chr3 127443892 127445147 + 0 NA intron (ENSMUSG00000032826.19, intron 1 of 1) protein_coding-intron (ENSMUSG00000032826.19, intron 1 of 1) -36601 ENSMUSG00000105116.1 ENSMUSG00000105116 ENSMUST00000196760 Gm44494 miRNA Interval_14268 chr10 30118568 30118783 + 0 NA Intergenic Intergenic -33341 ENSMUSG00000111001.1 ENSMUSG00000111001 ENSMUST00000215786 Gm8767 processed_pseudogene Interval_166230 chr9 57640207 57641015 + 0 NA intron (ENSMUSG00000032312.7, intron 2 of 14) protein_coding-intron (ENSMUSG00000032312.7, intron 1 of 12) -6544 ENSMUSG00000032312.7 ENSMUSG00000032312 ENSMUST00000213943 Csk protein_coding Interval_70366 chr17 9097949 9098166 + 0 NA Intergenic Intergenic -4621 ENSMUSG00000117205.1 ENSMUSG00000117205 ENSMUST00000233704 Gm29711 processed_pseudogene Interval_58373 chr15 33895919 33896827 + 0 NA Intergenic Intergenic 64925 ENSMUSG00000115318.1 ENSMUSG00000115318 ENSMUST00000227474 Gm49089 TEC Interval_35536 chr12 24600548 24601487 + 0 NA intron (ENSMUSG00000020656.16, intron 6 of 13) protein_coding-intron (ENSMUSG00000020656.16, intron 6 of 13) 20298 ENSMUSG00000020656.16 ENSMUSG00000020656 ENSMUST00000020985 Grhl1 protein_coding Interval_71335 chr17 22369654 22369934 + 0 NA intron (ENSMUSG00000044501.17, intron 1 of 2) protein_coding-intron (ENSMUSG00000044501.17, intron 1 of 3) 8341 ENSMUSG00000044501.17 ENSMUSG00000044501 ENSMUST00000121315 Zfp758 protein_coding Interval_56454 chr14 118880542 118881214 + 0 NA TTS (ENSMUSG00000115718.1) antisense-TTS (ENSMUSG00000115718.1) 4996 ENSMUSG00000115718.1 ENSMUSG00000115718 ENSMUST00000226752 Gm49179 antisense Interval_97860 chr2 144496292 144496945 + 0 NA intron (ENSMUSG00000083674.3, intron 2 of 2) protein_coding-intron (ENSMUSG00000037259.15, intron 10 of 20) 30780 ENSMUSG00000037259.15 ENSMUSG00000037259 ENSMUST00000150816 Dzank1 protein_coding Interval_57817 chr15 21365955 21367163 + 0 NA intron (ENSMUSG00000040452.9, intron 4 of 12) protein_coding-intron (ENSMUSG00000040452.9, intron 3 of 11) 186402 ENSMUSG00000103296.1 ENSMUSG00000103296 ENSMUST00000195204 Gm38234 TEC Interval_47232 chr13 78577166 78577587 + 0 NA Intergenic Intergenic -60641 ENSMUSG00000114594.1 ENSMUSG00000114594 ENSMUST00000226045 Gm48402 lincRNA Interval_35624 chr12 26060370 26060966 + 0 NA Intergenic Intergenic -89648 ENSMUSG00000113611.1 ENSMUSG00000113611 ENSMUST00000220612 Gm47750 processed_pseudogene Interval_109668 chr3 145882146 145882665 + 0 NA intron (ENSMUSG00000028194.15, intron 4 of 4) protein_coding-intron (ENSMUSG00000028194.15, intron 4 of 5) 3385 ENSMUSG00000105388.1 ENSMUSG00000105388 ENSMUST00000197973 Rpl36a-ps2 processed_pseudogene Interval_72084 chr17 27928169 27929369 + 0 NA intron (ENSMUSG00000024219.16, intron 1 of 23) protein_coding-intron (ENSMUSG00000024219.16, intron 1 of 24) -19630 ENSMUSG00000024218.13 ENSMUSG00000024218 ENSMUST00000233681 Taf11 protein_coding Interval_19426 chr10 99165784 99166245 + 0 NA intron (ENSMUSG00000019952.15, intron 11 of 12) protein_coding-intron (ENSMUSG00000019952.15, intron 10 of 11) 18596 ENSMUSG00000089994.1 ENSMUSG00000089994 ENSMUST00000160182 Gm16239 antisense Interval_19595 chr10 105115878 105116325 + 0 NA Intergenic Intergenic 24234 ENSMUSG00000077407.1 ENSMUSG00000077407 ENSMUST00000104219 Gm25422 snoRNA Interval_67582 chr16 51367608 51368326 + 0 NA Intergenic Intergenic -4135 ENSMUSG00000081453.1 ENSMUSG00000081453 ENSMUST00000118650 Gm6767 processed_pseudogene Interval_31421 chr11 100576368 100576957 + 0 NA TTS (ENSMUSG00000006782.16) protein_coding-TTS (ENSMUSG00000006782.16) 1138 ENSMUSG00000006782.16 ENSMUSG00000006782 ENSMUST00000147403 Cnp protein_coding Interval_163690 chr9 24419979 24420221 + 0 NA intron (ENSMUSG00000043067.15, intron 21 of 21) protein_coding-intron (ENSMUSG00000043067.15, intron 22 of 22) 68982 ENSMUSG00000088104.1 ENSMUSG00000088104 ENSMUST00000157479 Gm22380 snoRNA Interval_1282 chr1 19109765 19110359 + 0 NA intron (ENSMUSG00000042596.7, intron 2 of 5) protein_coding-intron (ENSMUSG00000042596.7, intron 3 of 7) 2881 ENSMUSG00000042596.7 ENSMUSG00000042596 ENSMUST00000149505 Tfap2d protein_coding Interval_161697 chr8 122116774 122118967 + 0 NA intron (ENSMUSG00000092329.1, intron 1 of 15) protein_coding-intron (ENSMUSG00000092329.1, intron 1 of 15) 139846 ENSMUSG00000099140.1 ENSMUSG00000099140 ENSMUST00000184699 Mir7237 miRNA Interval_141182 chr6 125455765 125456906 + 0 NA Intergenic Intergenic 6689 ENSMUSG00000030342.8 ENSMUSG00000030342 ENSMUST00000140024 Cd9 protein_coding Interval_118781 chr4 133671075 133673127 + 0 NA intron (ENSMUSG00000043257.15, intron 1 of 2) protein_coding-intron (ENSMUSG00000043257.15, intron 1 of 3) 546 ENSMUSG00000043257.15 ENSMUSG00000043257 ENSMUST00000151837 Pigv protein_coding Interval_136362 chr6 53794516 53796084 + 0 NA Intergenic Intergenic 17916 ENSMUSG00000107984.1 ENSMUSG00000107984 ENSMUST00000203325 Gm5306 processed_pseudogene Interval_50589 chr14 16146629 16147420 + 0 NA Intergenic Intergenic -24373 ENSMUSG00000114484.1 ENSMUSG00000114484 ENSMUST00000225492 Gm8517 processed_pseudogene Interval_78412 chr18 12643219 12644956 + 0 NA intron (ENSMUSG00000024424.15, intron 1 of 13) protein_coding-intron (ENSMUSG00000024424.15, intron 1 of 13) 277 ENSMUSG00000117418.1 ENSMUSG00000117418 ENSMUST00000234209 Gm50063 antisense Interval_35471 chr12 22905628 22907016 + 0 NA promoter-TSS (ENSMUSG00000113876.1) processed_pseudogene-promoter-TSS (ENSMUSG00000113876.1) -159 ENSMUSG00000113876.1 ENSMUSG00000113876 ENSMUST00000221698 Gm48042 processed_pseudogene Interval_137934 chr6 83496846 83498212 + 0 NA intron (ENSMUSG00000014554.13, intron 1 of 6) protein_coding-intron (ENSMUSG00000014554.13, intron 1 of 6) -7109 ENSMUSG00000014554.13 ENSMUSG00000014554 ENSMUST00000147060 Dguok protein_coding Interval_155294 chr8 31012170 31012518 + 0 NA Intergenic Intergenic 8436 ENSMUSG00000109614.1 ENSMUSG00000109614 ENSMUST00000211579 Gm45252 processed_pseudogene Interval_100566 chr2 170155094 170155647 + 0 NA Intergenic Intergenic -7267 ENSMUSG00000052056.14 ENSMUSG00000052056 ENSMUST00000149318 Zfp217 protein_coding Interval_21142 chr10 126852985 126853757 + 0 NA Intergenic Intergenic -12870 ENSMUSG00000089550.1 ENSMUSG00000089550 ENSMUST00000158925 Gm24179 snoRNA Interval_107661 chr3 109568408 109569210 + 0 NA intron (ENSMUSG00000033721.16, intron 17 of 26) protein_coding-intron (ENSMUSG00000033721.16, intron 17 of 26) -78715 ENSMUSG00000033721.16 ENSMUSG00000033721 ENSMUST00000148866 Vav3 protein_coding Interval_20978 chr10 122964037 122964290 + 0 NA Intergenic Intergenic 21561 ENSMUSG00000065406.3 ENSMUSG00000065406 ENSMUST00000083472 Mirlet7i miRNA Interval_33552 chr11 117174610 117177567 + 0 NA Intergenic Intergenic 21019 ENSMUSG00000020823.16 ENSMUSG00000020823 ENSMUST00000153437 Sec14l1 protein_coding Interval_61245 chr15 80203384 80204047 + 0 NA intron (ENSMUSG00000042428.6, intron 1 of 1) protein_coding-intron (ENSMUSG00000042428.6, intron 1 of 1) 24699 ENSMUSG00000115962.1 ENSMUSG00000115962 ENSMUST00000231034 4930588D02Rik TEC Interval_91638 chr2 45088476 45089048 + 0 NA intron (ENSMUSG00000026872.18, intron 2 of 3) protein_coding-intron (ENSMUSG00000026872.18, intron 2 of 9) -22159 ENSMUSG00000052248.16 ENSMUSG00000052248 ENSMUST00000231441 Zeb2os antisense Interval_19962 chr10 111524726 111525078 + 0 NA Intergenic Intergenic 17206 ENSMUSG00000020205.8 ENSMUSG00000020205 ENSMUST00000186359 Phlda1 protein_coding Interval_42014 chr13 6536046 6536592 + 0 NA Intergenic Intergenic 5724 ENSMUSG00000114195.1 ENSMUSG00000114195 ENSMUST00000221776 2900042G08Rik TEC Interval_158662 chr8 85011222 85011652 + 0 NA exon (ENSMUSG00000052819.6, exon 4 of 10) protein_coding-exon (ENSMUSG00000052819.6, exon 4 of 10) 3094 ENSMUSG00000052819.6 ENSMUSG00000052819 ENSMUST00000209421 Best2 protein_coding Interval_53000 chr14 53121645 53121943 + 0 NA promoter-TSS (ENSMUSG00000095646.1) TR_V_gene-promoter-TSS (ENSMUSG00000095646.1) -320 ENSMUSG00000095646.1 ENSMUSG00000095646 ENSMUST00000103612 Trav10n TR_V_gene Interval_118613 chr4 132778372 132779280 + 0 NA TTS (ENSMUSG00000028884.14) protein_coding-TTS (ENSMUSG00000028884.14) 3698 ENSMUSG00000028884.14 ENSMUSG00000028884 ENSMUST00000156968 Rpa2 protein_coding Interval_46451 chr13 66267964 66268736 + 0 NA intron (ENSMUSG00000114616.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000114616.1, intron 1 of 2) 11707 ENSMUSG00000114239.1 ENSMUSG00000114239 ENSMUST00000225908 Gm48245 processed_pseudogene Interval_83827 chr19 4927760 4928780 + 0 NA promoter-TSS (ENSMUSG00000063904.4) protein_coding-promoter-TSS (ENSMUSG00000063904.4) -6878 ENSMUSG00000063904.4 ENSMUSG00000063904 ENSMUST00000236758 Dpp3 protein_coding Interval_89362 chr2 19846005 19846270 + 0 NA Intergenic Intergenic -42516 ENSMUSG00000105927.1 ENSMUSG00000105927 ENSMUST00000198109 Gm44457 miRNA Interval_148821 chr7 88598327 88598522 + 0 NA Intergenic Intergenic -25575 ENSMUSG00000098174.1 ENSMUSG00000098174 ENSMUST00000183134 Gm8183 processed_pseudogene Interval_163441 chr9 21445152 21446659 + 0 NA intron (ENSMUSG00000033335.17, intron 1 of 2) protein_coding-intron (ENSMUSG00000033335.17, intron 1 of 20) 20937 ENSMUSG00000033335.17 ENSMUSG00000033335 ENSMUST00000174243 Dnm2 protein_coding Interval_161311 chr8 119674133 119674457 + 0 NA intron (ENSMUSG00000023336.6, intron 1 of 4) protein_coding-intron (ENSMUSG00000023336.6, intron 1 of 6) -3414 ENSMUSG00000110453.1 ENSMUSG00000110453 ENSMUST00000212465 Gm32352 antisense Interval_25867 chr11 52250211 52250454 + 0 NA Intergenic Intergenic 16608 ENSMUSG00000086920.1 ENSMUSG00000086920 ENSMUST00000143016 Gm12207 antisense Interval_158060 chr8 78474311 78474731 + 0 NA Intergenic Intergenic 11889 ENSMUSG00000110057.1 ENSMUSG00000110057 ENSMUST00000209570 Gm2225 processed_pseudogene Interval_37423 chr12 68172177 68172406 + 0 NA Intergenic Intergenic 81884 ENSMUSG00000113674.1 ENSMUSG00000113674 ENSMUST00000222955 Hspe1-ps1 processed_pseudogene Interval_143324 chr7 5328872 5329543 + 0 NA intron (ENSMUSG00000035177.8, intron 4 of 11) protein_coding-intron (ENSMUSG00000035177.8, intron 4 of 11) -11666 ENSMUSG00000035177.8 ENSMUSG00000035177 ENSMUST00000207520 Nlrp2 protein_coding Interval_72192 chr17 28515916 28516276 + 0 NA intron (ENSMUSG00000024222.17, intron 1 of 2) protein_coding-intron (ENSMUSG00000024222.17, intron 1 of 13) 1418 ENSMUSG00000024222.17 ENSMUSG00000024222 ENSMUST00000147716 Fkbp5 protein_coding Interval_142449 chr6 142395442 142396320 + 0 NA intron (ENSMUSG00000030245.10, intron 3 of 4) protein_coding-intron (ENSMUSG00000030245.10, intron 3 of 4) 8628 ENSMUSG00000030245.10 ENSMUSG00000030245 ENSMUST00000146508 Golt1b protein_coding Interval_67472 chr16 49278632 49279141 + 0 NA Intergenic Intergenic 19012 ENSMUSG00000058176.3 ENSMUSG00000058176 ENSMUST00000080694 Gm5407 processed_pseudogene Interval_105070 chr3 80961450 80961752 + 0 NA Intergenic Intergenic -1359 ENSMUSG00000105092.1 ENSMUSG00000105092 ENSMUST00000200360 Gm42468 lincRNA Interval_82543 chr18 75031323 75032321 + 0 NA intron (ENSMUSG00000035765.10, intron 1 of 8) protein_coding-intron (ENSMUSG00000035765.10, intron 1 of 16) 7966 ENSMUSG00000098305.1 ENSMUSG00000098305 ENSMUST00000185185 Gm27781 rRNA Interval_45434 chr13 55152437 55153598 + 0 NA intron (ENSMUSG00000005320.9, intron 1 of 17) protein_coding-intron (ENSMUSG00000005320.9, intron 1 of 17) -2666 ENSMUSG00000005320.9 ENSMUSG00000005320 ENSMUST00000162167 Fgfr4 protein_coding Interval_124077 chr5 38097316 38097921 + 0 NA intron (ENSMUSG00000029125.14, intron 2 of 8) protein_coding-intron (ENSMUSG00000029125.14, intron 2 of 10) 38479 ENSMUSG00000107276.1 ENSMUSG00000107276 ENSMUST00000202512 Gm42858 TEC Interval_142488 chr6 142809903 142810178 + 0 NA Intergenic Intergenic -4345 ENSMUSG00000072683.3 ENSMUSG00000072683 ENSMUST00000159599 Gm7457 processed_transcript Interval_111345 chr4 19523092 19523454 + 0 NA exon (ENSMUSG00000028228.5, exon 16 of 16) protein_coding-exon (ENSMUSG00000028228.5, exon 16 of 16) -8494 ENSMUSG00000089090.1 ENSMUSG00000089090 ENSMUST00000158465 Gm25655 misc_RNA Interval_58871 chr15 39437216 39437957 + 0 NA TTS (ENSMUSG00000037386.16) protein_coding-TTS (ENSMUSG00000037386.16) 348 ENSMUSG00000037386.16 ENSMUSG00000037386 ENSMUST00000226410 Rims2 protein_coding Interval_46392 chr13 64447378 64448738 + 0 NA Intergenic Intergenic -1413 ENSMUSG00000113244.1 ENSMUSG00000113244 ENSMUST00000221428 Gm31218 lincRNA Interval_170799 chr9 110852309 110853229 + 0 NA intron (ENSMUSG00000049719.14, intron 4 of 4) protein_coding-intron (ENSMUSG00000049719.14, intron 3 of 3) 8263 ENSMUSG00000049719.14 ENSMUSG00000049719 ENSMUST00000119427 Prss46 protein_coding Interval_63463 chr15 101230976 101232032 + 0 NA intron (ENSMUSG00000000531.5, intron 7 of 7) protein_coding-intron (ENSMUSG00000000531.5, intron 7 of 7) -6318 ENSMUSG00000097915.2 ENSMUSG00000097915 ENSMUST00000229239 A330009N23Rik antisense Interval_32985 chr11 113520454 113521290 + 0 NA intron (ENSMUSG00000041654.15, intron 4 of 4) protein_coding-intron (ENSMUSG00000041654.15, intron 5 of 10) 44907 ENSMUSG00000041654.15 ENSMUSG00000041654 ENSMUST00000123153 Slc39a11 protein_coding Interval_157558 chr8 71417570 71418284 + 0 NA Intergenic Intergenic 10236 ENSMUSG00000046295.13 ENSMUSG00000046295 ENSMUST00000136522 Ankle1 protein_coding Interval_165822 chr9 53536283 53537700 + 0 NA promoter-TSS (ENSMUSG00000033054.7) protein_coding-promoter-TSS (ENSMUSG00000033054.7) -251 ENSMUSG00000034218.16 ENSMUSG00000034218 ENSMUST00000150244 Atm protein_coding Interval_119513 chr4 138031828 138032426 + 0 NA intron (ENSMUSG00000028760.16, intron 2 of 8) protein_coding-intron (ENSMUSG00000028760.16, intron 2 of 9) 38614 ENSMUSG00000028760.16 ENSMUSG00000028760 ENSMUST00000148074 Eif4g3 protein_coding Interval_55866 chr14 101660568 101661996 + 0 NA intron (ENSMUSG00000022111.9, intron 2 of 8) protein_coding-intron (ENSMUSG00000022111.9, intron 2 of 8) 7257 ENSMUSG00000022111.9 ENSMUSG00000022111 ENSMUST00000226340 Uchl3 protein_coding Interval_16679 chr10 66994524 66995857 + 0 NA Intergenic Intergenic -9885 ENSMUSG00000112925.1 ENSMUSG00000112925 ENSMUST00000218205 Gm31763 antisense Interval_61787 chr15 84156732 84158890 + 0 NA Intergenic Intergenic -10459 ENSMUSG00000098882.1 ENSMUSG00000098882 ENSMUST00000184924 Mir6392 miRNA Interval_153763 chr8 7624340 7624578 + 0 NA Intergenic Intergenic -14305 ENSMUSG00000077378.1 ENSMUSG00000077378 ENSMUST00000104190 Gm25169 snoRNA Interval_120205 chr4 144264286 144264571 + 0 NA Intergenic Intergenic 16051 ENSMUSG00000036749.15 ENSMUSG00000036749 ENSMUST00000133357 Pramel5 protein_coding Interval_54598 chr14 70965703 70966274 + 0 NA intron (ENSMUSG00000022103.10, intron 1 of 6) protein_coding-intron (ENSMUSG00000022103.10, intron 4 of 8) 75460 ENSMUSG00000022103.10 ENSMUSG00000022103 ENSMUST00000227633 Gfra2 protein_coding Interval_91481 chr2 39190022 39191089 + 0 NA intron (ENSMUSG00000035236.17, intron 1 of 17) protein_coding-intron (ENSMUSG00000035236.17, intron 1 of 17) -8514 ENSMUSG00000107955.1 ENSMUSG00000107955 ENSMUST00000203419 Gm44027 TEC Interval_45566 chr13 55921763 55921995 + 0 NA intron (ENSMUSG00000114493.2, intron 2 of 5) antisense-intron (ENSMUSG00000114493.2, intron 2 of 5) -85687 ENSMUSG00000021506.7 ENSMUSG00000021506 ENSMUST00000173618 Pitx1 protein_coding Interval_126413 chr5 88259041 88259730 + 0 NA Intergenic Intergenic -9534 ENSMUSG00000090302.1 ENSMUSG00000090302 ENSMUST00000169154 Gm7714 protein_coding Interval_107943 chr3 117061741 117062474 + 0 NA intron (ENSMUSG00000028009.7, intron 6 of 8) lincRNA-intron (ENSMUSG00000028009.7, intron 6 of 8) 15658 ENSMUSG00000028009.7 ENSMUSG00000028009 ENSMUST00000029642 1700061I17Rik lincRNA Interval_122775 chr5 25340468 25341142 + 0 NA intron (ENSMUSG00000038056.15, intron 25 of 33) protein_coding-intron (ENSMUSG00000038056.15, intron 26 of 58) -28215 ENSMUSG00000106457.1 ENSMUSG00000106457 ENSMUST00000198731 Gm42585 TEC Interval_70983 chr17 16986754 16987925 + 0 NA Intergenic Intergenic 35787 ENSMUSG00000060149.7 ENSMUSG00000060149 ENSMUST00000071374 BC002059 lincRNA Interval_69588 chr16 94453523 94454004 + 0 NA intron (ENSMUSG00000040785.19, intron 36 of 44) protein_coding-intron (ENSMUSG00000040785.19, intron 37 of 45) 24690 ENSMUSG00000075829.1 ENSMUSG00000075829 ENSMUST00000101881 Gm23692 snRNA Interval_118348 chr4 130807774 130808021 + 0 NA intron (ENSMUSG00000025743.14, intron 1 of 1) protein_coding-intron (ENSMUSG00000025743.14, intron 1 of 4) -4041 ENSMUSG00000025743.14 ENSMUSG00000025743 ENSMUST00000140623 Sdc3 protein_coding Interval_135637 chr6 42196767 42196998 + 0 NA Intergenic Intergenic -18446 ENSMUSG00000051917.3 ENSMUSG00000051917 ENSMUST00000063489 Tas2r144 protein_coding Interval_102669 chr3 29245350 29245525 + 0 NA intron (ENSMUSG00000063600.14, intron 4 of 5) protein_coding-intron (ENSMUSG00000063600.14, intron 4 of 12) 25550 ENSMUSG00000102579.1 ENSMUSG00000102579 ENSMUST00000195304 Gm37965 TEC Interval_166392 chr9 58863581 58864101 + 0 NA TTS (ENSMUSG00000032338.9) protein_coding-TTS (ENSMUSG00000032338.9) 40429 ENSMUSG00000032338.9 ENSMUSG00000032338 ENSMUST00000034889 Hcn4 protein_coding Interval_85590 chr19 28883171 28883703 + 0 NA intron (ENSMUSG00000024935.11, intron 2 of 9) protein_coding-intron (ENSMUSG00000024935.11, intron 2 of 11) -19730 ENSMUSG00000089993.1 ENSMUSG00000089993 ENSMUST00000161562 Gm5822 processed_pseudogene Interval_5376 chr1 88139455 88141249 + 0 NA intron (ENSMUSG00000054545.17, intron 2 of 4) protein_coding-intron (ENSMUSG00000054545.17, intron 1 of 4) 5470 ENSMUSG00000054545.17 ENSMUSG00000054545 ENSMUST00000014263 Ugt1a6a protein_coding Interval_158051 chr8 78358004 78359344 + 0 NA intron (ENSMUSG00000037101.16, intron 9 of 10) protein_coding-intron (ENSMUSG00000037101.16, intron 12 of 13) 77971 ENSMUSG00000031688.4 ENSMUSG00000031688 ENSMUST00000034115 Pou4f2 protein_coding Interval_118103 chr4 128970973 128971545 + 0 NA Intergenic Intergenic -8831 ENSMUSG00000028789.16 ENSMUSG00000028789 ENSMUST00000156739 Azin2 protein_coding Interval_13417 chr10 18044613 18045259 + 0 NA Intergenic Intergenic -21846 ENSMUSG00000078453.3 ENSMUSG00000078453 ENSMUST00000220433 Abracl protein_coding Interval_44538 chr13 45897704 45898187 + 0 NA intron (ENSMUSG00000046876.16, intron 1 of 2) protein_coding-intron (ENSMUSG00000046876.16, intron 2 of 7) -38095 ENSMUSG00000113987.1 ENSMUSG00000113987 ENSMUST00000222376 4930453C13Rik antisense Interval_168526 chr9 83061336 83061936 + 0 NA Intergenic Intergenic 11752 ENSMUSG00000099188.1 ENSMUSG00000099188 ENSMUST00000184004 Gm27248 processed_pseudogene Interval_95482 chr2 109990225 109990730 + 0 NA intron (ENSMUSG00000050199.13, intron 3 of 5) protein_coding-intron (ENSMUSG00000050199.13, intron 3 of 17) 14935 ENSMUSG00000050199.13 ENSMUSG00000050199 ENSMUST00000142869 Lgr4 protein_coding Interval_81630 chr18 62548282 62548996 + 0 NA promoter-TSS (ENSMUSG00000042211.7) protein_coding-promoter-TSS (ENSMUSG00000042211.7) -27910 ENSMUSG00000042211.7 ENSMUSG00000042211 ENSMUST00000235807 Fbxo38 protein_coding Interval_28401 chr11 75665830 75666112 + 0 NA TTS (ENSMUSG00000017774.19) protein_coding-TTS (ENSMUSG00000017774.19) -4305 ENSMUSG00000017774.19 ENSMUSG00000017774 ENSMUST00000155027 Myo1c protein_coding Interval_17474 chr10 77123403 77124060 + 0 NA intron (ENSMUSG00000001435.15, intron 2 of 41) protein_coding-intron (ENSMUSG00000001435.15, intron 2 of 41) -13369 ENSMUSG00000112612.1 ENSMUSG00000112612 ENSMUST00000218871 Gm7775 processed_pseudogene Interval_71800 chr17 26178440 26179237 + 0 NA intron (ENSMUSG00000024182.16, intron 3 of 9) protein_coding-intron (ENSMUSG00000024182.16, intron 3 of 10) -9315 ENSMUSG00000024182.16 ENSMUSG00000024182 ENSMUST00000169268 Axin1 protein_coding Interval_170187 chr9 106065645 106066134 + 0 NA intron (ENSMUSG00000032572.9, intron 8 of 37) protein_coding-intron (ENSMUSG00000032572.9, intron 8 of 37) -29585 ENSMUSG00000103434.1 ENSMUSG00000103434 ENSMUST00000192983 Gm36993 TEC Interval_65351 chr16 21777895 21778894 + 0 NA intron (ENSMUSG00000022853.7, intron 1 of 6) protein_coding-intron (ENSMUSG00000022853.7, intron 1 of 6) 4281 ENSMUSG00000088758.1 ENSMUSG00000088758 ENSMUST00000158133 Gm24898 snRNA Interval_10788 chr1 174836589 174837482 + 0 NA exon (ENSMUSG00000050069.3, exon 2 of 2) protein_coding-exon (ENSMUSG00000050069.3, exon 2 of 2) 84784 ENSMUSG00000050069.3 ENSMUSG00000050069 ENSMUST00000055294 Grem2 protein_coding Interval_6540 chr1 115045417 115045655 + 0 NA Intergenic Intergenic 174227 ENSMUSG00000101687.1 ENSMUSG00000101687 ENSMUST00000185902 Gm4854 processed_pseudogene Interval_161839 chr8 123126026 123127460 + 0 NA exon (ENSMUSG00000034796.14, exon 6 of 12) protein_coding-exon (ENSMUSG00000034796.14, exon 6 of 12) -3363 ENSMUSG00000098582.1 ENSMUSG00000098582 ENSMUST00000184815 Mir7080 miRNA Interval_16657 chr10 66879401 66880356 + 0 NA Intergenic Intergenic 11734 ENSMUSG00000112267.1 ENSMUSG00000112267 ENSMUST00000217953 Gm47903 lincRNA Interval_122382 chr5 21840923 21841335 + 0 NA intron (ENSMUSG00000029015.9, intron 2 of 13) protein_coding-intron (ENSMUSG00000029015.9, intron 4 of 19) -20612 ENSMUSG00000029015.9 ENSMUSG00000029015 ENSMUST00000150012 Slc26a5 protein_coding Interval_51931 chr14 34053299 34053493 + 0 NA promoter-TSS (ENSMUSG00000047441.4) protein_coding-promoter-TSS (ENSMUSG00000047441.4) 219 ENSMUSG00000047441.4 ENSMUSG00000047441 ENSMUST00000058725 Antxrl protein_coding Interval_19786 chr10 108806097 108806315 + 0 NA intron (ENSMUSG00000035864.14, intron 3 of 7) protein_coding-intron (ENSMUSG00000035864.14, intron 3 of 10) 27895 ENSMUSG00000111910.1 ENSMUSG00000111910 ENSMUST00000219164 Gm47472 TEC Interval_155899 chr8 40883318 40884088 + 0 NA intron (ENSMUSG00000031596.15, intron 1 of 11) protein_coding-intron (ENSMUSG00000031596.15, intron 1 of 11) 21125 ENSMUSG00000031596.15 ENSMUSG00000031596 ENSMUST00000118432 Slc7a2 protein_coding Interval_119190 chr4 136099898 136100287 + 0 NA Intergenic Intergenic -25120 ENSMUSG00000082877.1 ENSMUSG00000082877 ENSMUST00000121307 Gm13009 processed_pseudogene Interval_19248 chr10 95761792 95763498 + 0 NA intron (ENSMUSG00000101517.6, intron 1 of 5) lincRNA-intron (ENSMUSG00000101517.6, intron 1 of 5) 16568 ENSMUSG00000101517.6 ENSMUSG00000101517 ENSMUST00000185499 4732465J04Rik lincRNA Interval_3926 chr1 64854105 64854499 + 0 NA intron (ENSMUSG00000051344.13, intron 6 of 8) protein_coding-intron (ENSMUSG00000051344.13, intron 6 of 7) -17538 ENSMUSG00000051344.13 ENSMUSG00000051344 ENSMUST00000134097 Plekhm3 protein_coding Interval_1982 chr1 35465042 35465248 + 0 NA Intergenic Intergenic 186152 ENSMUSG00000104417.1 ENSMUSG00000104417 ENSMUST00000195168 Gm37068 lincRNA Interval_40301 chr12 103325090 103326365 + 0 NA intron (ENSMUSG00000021200.14, intron 5 of 7) protein_coding-intron (ENSMUSG00000021200.14, intron 7 of 9) -10958 ENSMUSG00000100789.6 ENSMUSG00000100789 ENSMUST00000191414 Gm29508 antisense Interval_151528 chr7 123294630 123296343 + 0 NA exon (ENSMUSG00000030766.15, exon 15 of 15) protein_coding-exon (ENSMUSG00000030766.15, exon 15 of 15) 30297 ENSMUSG00000030769.15 ENSMUSG00000030769 ENSMUST00000206180 Slc5a11 protein_coding Interval_40090 chr12 101102635 101103038 + 0 NA intron (ENSMUSG00000113817.1, intron 1 of 1) transcribed_unprocessed_pseudogene-intron (ENSMUSG00000113817.1, intron 1 of 1) 14275 ENSMUSG00000113817.1 ENSMUSG00000113817 ENSMUST00000223122 Gm21056 transcribed_unprocessed_pseudogene Interval_84835 chr19 17315810 17316926 + 0 NA Intergenic Intergenic -50030 ENSMUSG00000117946.1 ENSMUSG00000117946 ENSMUST00000237419 Gm50280 processed_pseudogene Interval_139391 chr6 99756100 99756402 + 0 NA Intergenic Intergenic -14406 ENSMUSG00000108082.1 ENSMUSG00000108082 ENSMUST00000204852 Gm5314 processed_pseudogene Interval_92536 chr2 60410523 60411940 + 0 NA promoter-TSS (ENSMUSG00000087283.1) antisense-promoter-TSS (ENSMUSG00000087283.1) -294 ENSMUSG00000087283.1 ENSMUSG00000087283 ENSMUST00000131457 Gm13580 antisense Interval_56422 chr14 118654143 118654691 + 0 NA intron (ENSMUSG00000032849.14, intron 3 of 30) protein_coding-intron (ENSMUSG00000032849.14, intron 3 of 30) 45075 ENSMUSG00000032849.14 ENSMUSG00000032849 ENSMUST00000227480 Abcc4 protein_coding Interval_109151 chr3 136837544 136837854 + 0 NA intron (ENSMUSG00000028161.17, intron 1 of 5) protein_coding-intron (ENSMUSG00000028161.17, intron 2 of 13) -39321 ENSMUSG00000106439.1 ENSMUSG00000106439 ENSMUST00000200068 Gm44327 miRNA Interval_56098 chr14 105684903 105685529 + 0 NA Intergenic Intergenic 3387 ENSMUSG00000060143.7 ENSMUSG00000060143 ENSMUST00000227553 Gm10076 lincRNA Interval_131837 chr5 140263818 140264282 + 0 NA intron (ENSMUSG00000029554.15, intron 9 of 16) protein_coding-intron (ENSMUSG00000029554.15, intron 9 of 17) 54508 ENSMUSG00000087248.7 ENSMUSG00000087248 ENSMUST00000133999 Gm16120 antisense Interval_24804 chr11 38747410 38748324 + 0 NA Intergenic Intergenic 50410 ENSMUSG00000070249.1 ENSMUSG00000070249 ENSMUST00000093736 Gm23520 snRNA Interval_29335 chr11 83263101 83263627 + 0 NA Intergenic Intergenic -8134 ENSMUSG00000064856.1 ENSMUSG00000064856 ENSMUST00000082922 Gm23444 snRNA Interval_24921 chr11 41380898 41381568 + 0 NA Intergenic Intergenic 3155 ENSMUSG00000081112.1 ENSMUSG00000081112 ENSMUST00000121214 Gm12140 processed_pseudogene Interval_159528 chr8 95248881 95249104 + 0 NA exon (ENSMUSG00000031789.17, exon 30 of 33) protein_coding-exon (ENSMUSG00000031789.17, exon 30 of 33) 51674 ENSMUSG00000031789.17 ENSMUSG00000031789 ENSMUST00000212237 Cngb1 protein_coding Interval_123897 chr5 36369306 36369641 + 0 NA intron (ENSMUSG00000029093.14, intron 1 of 7) protein_coding-intron (ENSMUSG00000029093.14, intron 1 of 26) -3555 ENSMUSG00000029093.14 ENSMUSG00000029093 ENSMUST00000141508 Sorcs2 protein_coding Interval_67926 chr16 59594882 59595106 + 0 NA intron (ENSMUSG00000022723.16, intron 1 of 21) protein_coding-intron (ENSMUSG00000022723.16, intron 1 of 21) 44135 ENSMUSG00000022722.18 ENSMUSG00000022722 ENSMUST00000149797 Arl6 protein_coding Interval_89823 chr2 25706469 25707449 + 0 NA exon (ENSMUSG00000049086.8, exon 1 of 1) protein_coding-exon (ENSMUSG00000049086.8, exon 1 of 1) 220 ENSMUSG00000049086.8 ENSMUSG00000049086 ENSMUST00000061483 Bmyc protein_coding Interval_91464 chr2 39064865 39066065 + 0 NA promoter-TSS (ENSMUSG00000026754.16) protein_coding-promoter-TSS (ENSMUSG00000026754.16) 33945 ENSMUSG00000035236.17 ENSMUSG00000035236 ENSMUST00000142872 Scai protein_coding Interval_12263 chr1 191218394 191218746 + 0 NA promoter-TSS (ENSMUSG00000026628.13) protein_coding-promoter-TSS (ENSMUSG00000026628.13) -531 ENSMUSG00000026628.13 ENSMUSG00000026628 ENSMUST00000131854 Atf3 protein_coding Interval_134971 chr6 34216102 34217467 + 0 NA Intergenic Intergenic 37552 ENSMUSG00000087613.1 ENSMUSG00000087613 ENSMUST00000145644 Gm13855 lincRNA Interval_84568 chr19 12780278 12780544 + 0 NA intron (ENSMUSG00000118491.1, intron 2 of 12) protein_coding-intron (ENSMUSG00000024695.16, intron 2 of 10) 9898 ENSMUSG00000024695.16 ENSMUSG00000024695 ENSMUST00000137256 Zfp91 protein_coding Interval_75762 chr17 71117653 71119424 + 0 NA intron (ENSMUSG00000024049.15, intron 33 of 36) protein_coding-intron (ENSMUSG00000024049.15, intron 33 of 36) -26000 ENSMUSG00000117315.1 ENSMUSG00000117315 ENSMUST00000233463 1600022D10Rik lincRNA Interval_40990 chr12 110479517 110479967 + 0 NA promoter-TSS (ENSMUSG00000113585.1) processed_transcript-promoter-TSS (ENSMUSG00000113585.1) 5874 ENSMUSG00000113585.1 ENSMUSG00000113585 ENSMUST00000222863 Gm19605 processed_transcript Interval_123973 chr5 36944671 36946704 + 0 NA intron (ENSMUSG00000029120.10, intron 6 of 8) protein_coding-intron (ENSMUSG00000029120.10, intron 6 of 8) 31269 ENSMUSG00000039474.13 ENSMUSG00000039474 ENSMUST00000167937 Wfs1 protein_coding Interval_173665 chrX 101646457 101647891 + 0 NA intron (ENSMUSG00000034160.13, intron 3 of 3) protein_coding-intron (ENSMUSG00000034160.13, intron 3 of 21) 7034 ENSMUSG00000034160.13 ENSMUSG00000034160 ENSMUST00000147635 Ogt protein_coding Interval_59171 chr15 46037732 46038035 + 0 NA Intergenic Intergenic -57846 ENSMUSG00000096157.2 ENSMUSG00000096157 ENSMUST00000178604 Gm5472 processed_pseudogene Interval_96015 chr2 119193906 119194300 + 0 NA intron (ENSMUSG00000034278.3, intron 1 of 4) protein_coding-intron (ENSMUSG00000034278.3, intron 1 of 10) 6586 ENSMUSG00000081572.3 ENSMUSG00000081572 ENSMUST00000122061 Gm14138 processed_pseudogene Interval_154661 chr8 22423377 22423732 + 0 NA intron (ENSMUSG00000031533.4, intron 4 of 4) protein_coding-intron (ENSMUSG00000031533.4, intron 4 of 6) 12156 ENSMUSG00000031533.4 ENSMUSG00000031533 ENSMUST00000211083 Mrps31 protein_coding Interval_135427 chr6 39320483 39320701 + 0 NA Intergenic Intergenic -54650 ENSMUSG00000089422.1 ENSMUSG00000089422 ENSMUST00000158797 Gm26008 snRNA Interval_66462 chr16 34013781 34014269 + 0 NA exon (ENSMUSG00000061751.16, exon 49 of 60) protein_coding-exon (ENSMUSG00000061751.16, exon 49 of 60) -6568 ENSMUSG00000116835.1 ENSMUSG00000116835 ENSMUST00000231993 Gm49594 processed_pseudogene Interval_148470 chr7 81522883 81523924 + 0 NA promoter-TSS (ENSMUSG00000097277.7) lincRNA-promoter-TSS (ENSMUSG00000097277.7) -147 ENSMUSG00000097277.7 ENSMUSG00000097277 ENSMUST00000181492 2900076A07Rik lincRNA Interval_133335 chr6 3399415 3399702 + 0 NA promoter-TSS (ENSMUSG00000047735.14) protein_coding-promoter-TSS (ENSMUSG00000047735.14) -14552 ENSMUSG00000047735.14 ENSMUSG00000047735 ENSMUST00000201638 Samd9l protein_coding Interval_39384 chr12 87035445 87035646 + 0 NA TTS (ENSMUSG00000080443.1) miRNA-TTS (ENSMUSG00000080443.1) 779 ENSMUSG00000080443.1 ENSMUSG00000080443 ENSMUST00000116793 Gm25847 miRNA Interval_97247 chr2 132607087 132608354 + 0 NA intron (ENSMUSG00000074783.10, intron 2 of 3) lincRNA-intron (ENSMUSG00000074783.10, intron 2 of 3) 9525 ENSMUSG00000074783.10 ENSMUSG00000074783 ENSMUST00000138751 AU019990 lincRNA Interval_141023 chr6 124448227 124448597 + 0 NA intron (ENSMUSG00000008153.12, intron 1 of 1) protein_coding-intron (ENSMUSG00000008153.12, intron 12 of 17) -14912 ENSMUSG00000008153.12 ENSMUSG00000008153 ENSMUST00000150774 Clstn3 protein_coding Interval_85351 chr19 25098648 25099999 + 0 NA intron (ENSMUSG00000052085.7, intron 12 of 47) protein_coding-intron (ENSMUSG00000052085.7, intron 12 of 47) 46710 ENSMUSG00000052085.7 ENSMUSG00000052085 ENSMUST00000236576 Dock8 protein_coding Interval_123823 chr5 35768501 35768872 + 0 NA intron (ENSMUSG00000029095.17, intron 1 of 21) protein_coding-intron (ENSMUSG00000029095.17, intron 1 of 19) -28699 ENSMUSG00000036553.16 ENSMUSG00000036553 ENSMUST00000154118 Sh3tc1 protein_coding Interval_1950 chr1 34867094 34867919 + 0 NA intron (ENSMUSG00000026123.11, intron 6 of 6) protein_coding-intron (ENSMUSG00000026123.11, intron 6 of 7) -10150 ENSMUSG00000026123.11 ENSMUSG00000026123 ENSMUST00000191722 Plekhb2 protein_coding Interval_73451 chr17 37367533 37367965 + 0 NA Intergenic Intergenic 8167 ENSMUSG00000095858.4 ENSMUSG00000095858 ENSMUST00000215398 Olfr104-ps protein_coding Interval_78984 chr18 23638393 23638741 + 0 NA intron (ENSMUSG00000024302.16, intron 19 of 24) protein_coding-intron (ENSMUSG00000024302.16, intron 15 of 20) 13270 ENSMUSG00000114088.1 ENSMUSG00000114088 ENSMUST00000220789 Gm47898 antisense Interval_120819 chr4 150817811 150818022 + 0 NA Intergenic Intergenic -7817 ENSMUSG00000085097.1 ENSMUSG00000085097 ENSMUST00000133196 Gm13049 lincRNA Interval_128430 chr5 113280262 113280775 + 0 NA promoter-TSS (ENSMUSG00000042216.13) protein_coding-promoter-TSS (ENSMUSG00000042216.13) -1182 ENSMUSG00000042216.13 ENSMUSG00000042216 ENSMUST00000140981 Sgsm1 protein_coding Interval_113973 chr4 62177398 62177821 + 0 NA Intergenic Intergenic -26746 ENSMUSG00000066153.2 ENSMUSG00000066153 ENSMUST00000077719 Mup21 protein_coding Interval_83069 chr18 81020742 81021406 + 0 NA Intergenic Intergenic -5699 ENSMUSG00000089257.1 ENSMUSG00000089257 ENSMUST00000158632 Gm25718 snRNA Interval_80110 chr18 37685131 37686045 + 0 NA exon (ENSMUSG00000103677.1, exon 1 of 4) protein_coding-exon (ENSMUSG00000103677.1, exon 1 of 4) -1296 ENSMUSG00000103677.1 ENSMUSG00000103677 ENSMUST00000195163 Pcdhga4 protein_coding Interval_165911 chr9 54585983 54587080 + 0 NA promoter-TSS (ENSMUSG00000032279.11) protein_coding-promoter-TSS (ENSMUSG00000032279.11) 197 ENSMUSG00000032279.11 ENSMUSG00000032279 ENSMUST00000214136 Idh3a protein_coding Interval_167234 chr9 66465014 66465491 + 0 NA TTS (ENSMUSG00000038664.16) protein_coding-TTS (ENSMUSG00000038664.16) -44611 ENSMUSG00000100130.1 ENSMUSG00000100130 ENSMUST00000186450 Gm28379 antisense Interval_150082 chr7 105713816 105714129 + 0 NA exon (ENSMUSG00000030882.19, exon 37 of 44) protein_coding-exon (ENSMUSG00000030882.19, exon 37 of 44) 19974 ENSMUSG00000030888.14 ENSMUSG00000030888 ENSMUST00000137902 Rrp8 protein_coding Interval_58150 chr15 29783238 29783979 + 0 NA Intergenic Intergenic -70204 ENSMUSG00000092639.1 ENSMUSG00000092639 ENSMUST00000174898 Mir3964 miRNA Interval_56174 chr14 110804015 110804844 + 0 NA Intergenic Intergenic 25201 ENSMUSG00000115349.1 ENSMUSG00000115349 ENSMUST00000228159 Gm9348 processed_pseudogene Interval_160704 chr8 111713798 111714369 + 0 NA exon (ENSMUSG00000031955.10, exon 5 of 7) protein_coding-exon (ENSMUSG00000031955.10, exon 5 of 7) 18053 ENSMUSG00000031955.10 ENSMUSG00000031955 ENSMUST00000212147 Bcar1 protein_coding Interval_164065 chr9 31252192 31255070 + 0 NA Intergenic Intergenic -21190 ENSMUSG00000091003.2 ENSMUSG00000091003 ENSMUST00000164658 Gm7244 processed_pseudogene Interval_165936 chr9 54801145 54803548 + 0 NA Intergenic Intergenic 22936 ENSMUSG00000111686.1 ENSMUSG00000111686 ENSMUST00000213253 Rab7-ps1 processed_pseudogene Interval_124975 chr5 62895141 62895522 + 0 NA Intergenic Intergenic 83657 ENSMUSG00000090326.2 ENSMUSG00000090326 ENSMUST00000170704 Dthd1 protein_coding Interval_118340 chr4 130766253 130766515 + 0 NA promoter-TSS (ENSMUSG00000093793.1) snoRNA-promoter-TSS (ENSMUSG00000093793.1) 53 ENSMUSG00000093793.1 ENSMUSG00000093793 ENSMUST00000082550 Gm24091 snoRNA Interval_83901 chr19 5460363 5461050 + 0 NA promoter-TSS (ENSMUSG00000024911.7) protein_coding-promoter-TSS (ENSMUSG00000024911.7) -1684 ENSMUSG00000024911.7 ENSMUSG00000024911 ENSMUST00000235533 Fibp protein_coding Interval_21961 chr11 5431635 5431864 + 0 NA intron (ENSMUSG00000041961.14, intron 1 of 3) protein_coding-intron (ENSMUSG00000041961.14, intron 1 of 8) -50009 ENSMUSG00000041961.14 ENSMUSG00000041961 ENSMUST00000143746 Znrf3 protein_coding Interval_151755 chr7 126444750 126444944 + 0 NA promoter-TSS (ENSMUSG00000030727.12) protein_coding-promoter-TSS (ENSMUSG00000030727.12) 2798 ENSMUSG00000030730.12 ENSMUSG00000030730 ENSMUST00000146973 Atp2a1 protein_coding Interval_89801 chr2 25535406 25535945 + 0 NA intron (ENSMUSG00000026942.13, intron 3 of 8) protein_coding-intron (ENSMUSG00000026942.13, intron 4 of 10) 3465 ENSMUSG00000026942.13 ENSMUSG00000026942 ENSMUST00000114234 Traf2 protein_coding Interval_152436 chr7 133019039 133020572 + 0 NA intron (ENSMUSG00000030970.16, intron 3 of 3) protein_coding-intron (ENSMUSG00000030970.16, intron 3 of 10) -36253 ENSMUSG00000085663.1 ENSMUSG00000085663 ENSMUST00000131085 Gm15718 antisense Interval_161114 chr8 117561674 117562863 + 0 NA intron (ENSMUSG00000034330.10, intron 5 of 32) protein_coding-intron (ENSMUSG00000034330.10, intron 5 of 32) -15242 ENSMUSG00000092818.2 ENSMUSG00000092818 ENSMUST00000175077 Gm27361 miRNA Interval_60161 chr15 66745707 66746879 + 0 NA intron (ENSMUSG00000053469.14, intron 5 of 17) protein_coding-intron (ENSMUSG00000053469.14, intron 34 of 47) -1966 ENSMUSG00000090464.1 ENSMUSG00000090464 ENSMUST00000169163 Gm17140 antisense Interval_47576 chr13 89384457 89385272 + 0 NA Intergenic Intergenic 193555 ENSMUSG00000094463.2 ENSMUSG00000094463 ENSMUST00000178288 Gm8546 processed_pseudogene Interval_114025 chr4 62593513 62594289 + 0 NA intron (ENSMUSG00000059810.18, intron 1 of 17) protein_coding-intron (ENSMUSG00000059810.18, intron 3 of 19) -29808 ENSMUSG00000059810.18 ENSMUSG00000059810 ENSMUST00000153875 Rgs3 protein_coding Interval_172188 chrX 8293420 8294663 + 0 NA Intergenic Intergenic 22908 ENSMUSG00000031170.14 ENSMUSG00000031170 ENSMUST00000115590 Slc38a5 protein_coding Interval_172063 chr9 124159067 124159768 + 0 NA Intergenic Intergenic 32733 ENSMUSG00000079227.10 ENSMUSG00000079227 ENSMUST00000097855 Ccr5 protein_coding Interval_156339 chr8 47539085 47539631 + 0 NA intron (ENSMUSG00000031568.16, intron 2 of 7) protein_coding-intron (ENSMUSG00000031568.16, intron 2 of 7) -11100 ENSMUSG00000031568.16 ENSMUSG00000031568 ENSMUST00000183107 Rwdd4a protein_coding Interval_40436 chr12 104879151 104881049 + 0 NA Intergenic Intergenic -15024 ENSMUSG00000021097.15 ENSMUSG00000021097 ENSMUST00000222412 Clmn protein_coding Interval_39973 chr12 100180591 100181496 + 0 NA Intergenic Intergenic -5968 ENSMUSG00000113335.1 ENSMUSG00000113335 ENSMUST00000220866 Gm48296 TEC Interval_78057 chr18 7589186 7590113 + 0 NA intron (ENSMUSG00000057440.8, intron 3 of 15) protein_coding-intron (ENSMUSG00000057440.8, intron 1 of 16) 8133 ENSMUSG00000094334.2 ENSMUSG00000094334 ENSMUST00000072582 Fabp5l2 processed_pseudogene Interval_2344 chr1 38209500 38210539 + 0 NA exon (ENSMUSG00000037138.18, exon 13 of 23) protein_coding-exon (ENSMUSG00000037138.18, exon 13 of 23) -29681 ENSMUSG00000085391.1 ENSMUSG00000085391 ENSMUST00000133299 Gm16150 antisense Interval_158835 chr8 86993934 86994526 + 0 NA Intergenic Intergenic -28611 ENSMUSG00000088261.1 ENSMUSG00000088261 ENSMUST00000157636 Gm24781 snoRNA Interval_37069 chr12 57346634 57346834 + 0 NA intron (ENSMUSG00000047022.18, intron 6 of 6) protein_coding-intron (ENSMUSG00000047022.18, intron 7 of 10) -73422 ENSMUSG00000078982.3 ENSMUSG00000078982 ENSMUST00000140773 Gm11025 processed_pseudogene Interval_169577 chr9 99232744 99233091 + 0 NA intron (ENSMUSG00000096316.7, intron 2 of 3) protein_coding-intron (ENSMUSG00000096316.7, intron 3 of 4) 3453 ENSMUSG00000096316.7 ENSMUSG00000096316 ENSMUST00000188555 Faiml protein_coding Interval_41646 chr12 117345076 117345802 + 0 NA Intergenic Intergenic -8427 ENSMUSG00000101930.1 ENSMUSG00000101930 ENSMUST00000186454 Gm5441 antisense Interval_89936 chr2 26598486 26598744 + 0 NA intron (ENSMUSG00000026922.13, intron 1 of 5) protein_coding-intron (ENSMUSG00000026922.13, intron 1 of 5) 5311 ENSMUSG00000026922.13 ENSMUSG00000026922 ENSMUST00000154753 Agpat2 protein_coding Interval_24507 chr11 33843115 33843976 + 0 NA promoter-TSS (ENSMUSG00000053519.17) protein_coding-promoter-TSS (ENSMUSG00000053519.17) -119468 ENSMUSG00000020155.2 ENSMUSG00000020155 ENSMUST00000020362 Kcnmb1 protein_coding Interval_78593 chr18 15002956 15003311 + 0 NA intron (ENSMUSG00000117450.1, intron 3 of 4) protein_coding-intron (ENSMUSG00000036225.15, intron 2 of 4) -8113 ENSMUSG00000071867.5 ENSMUSG00000071867 ENSMUST00000096579 Mrpl27-ps processed_pseudogene Interval_17311 chr10 75772740 75774020 + 0 NA promoter-TSS (ENSMUSG00000001666.8) protein_coding-promoter-TSS (ENSMUSG00000001666.8) -346 ENSMUSG00000001666.8 ENSMUSG00000001666 ENSMUST00000001716 Ddt protein_coding Interval_30777 chr11 96407302 96408413 + 0 NA Intergenic Intergenic 15745 ENSMUSG00000075587.5 ENSMUSG00000075587 ENSMUST00000117614 Gm11531 processed_pseudogene Interval_48729 chr13 102492218 102492480 + 0 NA Intergenic Intergenic 97936 ENSMUSG00000114846.1 ENSMUSG00000114846 ENSMUST00000225128 Gm29927 lincRNA Interval_26378 chr11 57488524 57489812 + 0 NA intron (ENSMUSG00000020523.14, intron 12 of 13) protein_coding-intron (ENSMUSG00000020523.14, intron 12 of 13) 29434 ENSMUSG00000020523.14 ENSMUSG00000020523 ENSMUST00000130596 Fam114a2 protein_coding Interval_169891 chr9 102771507 102771879 + 0 NA intron (ENSMUSG00000110884.1, intron 1 of 4) lincRNA-intron (ENSMUSG00000110884.1, intron 1 of 4) 198 ENSMUSG00000110884.1 ENSMUSG00000110884 ENSMUST00000217446 Gm47416 lincRNA Interval_13685 chr10 21033748 21033957 + 0 NA promoter-TSS (ENSMUSG00000111006.1) TEC-promoter-TSS (ENSMUSG00000111006.1) -59 ENSMUSG00000111006.1 ENSMUSG00000111006 ENSMUST00000215366 Gm10826 TEC Interval_87132 chr19 46367618 46367919 + 0 NA exon (ENSMUSG00000025227.14, exon 4 of 9) protein_coding-exon (ENSMUSG00000025227.14, exon 4 of 9) 8732 ENSMUSG00000065204.1 ENSMUSG00000065204 ENSMUST00000083270 Gm24610 snoRNA Interval_25320 chr11 46299322 46299543 + 0 NA intron (ENSMUSG00000020340.16, intron 1 of 30) protein_coding-intron (ENSMUSG00000020340.16, intron 1 of 30) 12926 ENSMUSG00000020340.16 ENSMUSG00000020340 ENSMUST00000129474 Cyfip2 protein_coding Interval_70827 chr17 15141395 15141831 + 0 NA Intergenic Intergenic -10546 ENSMUSG00000116655.1 ENSMUSG00000116655 ENSMUST00000231330 Gm35455 lincRNA Interval_152039 chr7 128494272 128495100 + 0 NA intron (ENSMUSG00000108626.1, intron 2 of 4) lincRNA-intron (ENSMUSG00000108626.1, intron 2 of 4) 5501 ENSMUSG00000108626.1 ENSMUSG00000108626 ENSMUST00000205319 Gm40457 lincRNA Interval_170103 chr9 104480657 104480877 + 0 NA TTS (ENSMUSG00000089116.1) snoRNA-TTS (ENSMUSG00000089116.1) 743 ENSMUSG00000089116.1 ENSMUSG00000089116 ENSMUST00000158491 Gm25904 snoRNA Interval_156238 chr8 46368563 46368961 + 0 NA Intergenic Intergenic 5511 ENSMUSG00000110035.1 ENSMUSG00000110035 ENSMUST00000210605 Gm30931 lincRNA Interval_22268 chr11 8445774 8446386 + 0 NA intron (ENSMUSG00000020422.14, intron 24 of 30) protein_coding-intron (ENSMUSG00000020422.14, intron 24 of 30) -62227 ENSMUSG00000083553.1 ENSMUSG00000083553 ENSMUST00000117240 Gm11989 processed_pseudogene Interval_173268 chrX 75764088 75765119 + 0 NA promoter-TSS (ENSMUSG00000087396.7) processed_transcript-promoter-TSS (ENSMUSG00000087396.7) 40931 ENSMUSG00000081996.1 ENSMUSG00000081996 ENSMUST00000117092 Gm7153 processed_pseudogene Interval_22765 chr11 14988269 14988581 + 0 NA Intergenic Intergenic -60733 ENSMUSG00000084183.1 ENSMUSG00000084183 ENSMUST00000121361 Gm12009 processed_pseudogene Interval_3640 chr1 60240922 60241407 + 0 NA intron (ENSMUSG00000073664.11, intron 4 of 27) protein_coding-intron (ENSMUSG00000073664.11, intron 16 of 54) 26464 ENSMUSG00000100516.1 ENSMUSG00000100516 ENSMUST00000190829 Gm29332 processed_pseudogene Interval_134101 chr6 20023288 20024285 + 0 NA Intergenic Intergenic 235733 ENSMUSG00000107067.1 ENSMUSG00000107067 ENSMUST00000201774 Gm42581 processed_pseudogene Interval_14624 chr10 37197264 37197489 + 0 NA Intergenic Intergenic 56287 ENSMUSG00000046463.5 ENSMUSG00000046463 ENSMUST00000217338 5930403N24Rik processed_transcript Interval_157105 chr8 65219659 65219835 + 0 NA Intergenic Intergenic 35503 ENSMUSG00000110283.1 ENSMUSG00000110283 ENSMUST00000211021 Gm45249 processed_pseudogene Interval_30297 chr11 93148458 93148892 + 0 NA intron (ENSMUSG00000056158.14, intron 1 of 8) protein_coding-intron (ENSMUSG00000056158.14, intron 2 of 9) 50647 ENSMUSG00000056158.14 ENSMUSG00000056158 ENSMUST00000107863 Car10 protein_coding Interval_120022 chr4 141406600 141407923 + 0 NA intron (ENSMUSG00000006216.10, intron 15 of 18) protein_coding-intron (ENSMUSG00000006216.10, intron 15 of 19) 8404 ENSMUSG00000086061.7 ENSMUSG00000086061 ENSMUST00000149247 Gm13075 antisense Interval_174634 chrX 160765504 160766758 + 0 NA Intergenic Intergenic -25370 ENSMUSG00000031293.13 ENSMUSG00000031293 ENSMUST00000150170 Rs1 protein_coding Interval_168161 chr9 77634054 77634757 + 0 NA Intergenic Intergenic -2095 ENSMUSG00000044938.8 ENSMUSG00000044938 ENSMUST00000057781 Klhl31 protein_coding Interval_150288 chr7 109344747 109345034 + 0 NA intron (ENSMUSG00000031027.15, intron 1 of 12) protein_coding-intron (ENSMUSG00000031027.15, intron 1 of 12) 43985 ENSMUSG00000081370.1 ENSMUSG00000081370 ENSMUST00000120160 Gm9105 processed_pseudogene Interval_107084 chr3 103401357 103401583 + 0 NA Intergenic Intergenic 8537 ENSMUSG00000089029.1 ENSMUSG00000089029 ENSMUST00000158404 Gm25009 snoRNA Interval_25850 chr11 52132427 52132635 + 0 NA Intergenic Intergenic 5785 ENSMUSG00000092870.1 ENSMUSG00000092870 ENSMUST00000175129 Mir3061 miRNA Interval_102878 chr3 32491867 32492141 + 0 NA exon (ENSMUSG00000091091.2, exon 1 of 4) protein_coding-exon (ENSMUSG00000091091.2, exon 1 of 4) 227 ENSMUSG00000091091.2 ENSMUSG00000091091 ENSMUST00000164954 Kcnmb3 protein_coding Interval_95282 chr2 105615675 105616904 + 0 NA intron (ENSMUSG00000086029.7, intron 1 of 3) antisense-intron (ENSMUSG00000086029.7, intron 2 of 3) 45054 ENSMUSG00000102424.2 ENSMUSG00000102424 ENSMUST00000194826 Paupar lincRNA Interval_149724 chr7 100943180 100944498 + 0 NA intron (ENSMUSG00000048779.5, intron 1 of 1) protein_coding-intron (ENSMUSG00000048779.5, intron 1 of 2) -6978 ENSMUSG00000109132.1 ENSMUSG00000109132 ENSMUST00000208262 Gm44545 TEC Interval_113128 chr4 48530989 48532782 + 0 NA Intergenic Intergenic -8661 ENSMUSG00000039693.11 ENSMUSG00000039693 ENSMUST00000132360 Msantd3 protein_coding Interval_105506 chr3 87130896 87133493 + 0 NA intron (ENSMUSG00000041734.15, intron 2 of 15) protein_coding-intron (ENSMUSG00000041734.15, intron 2 of 13) -25499 ENSMUSG00000102893.1 ENSMUSG00000102893 ENSMUST00000192571 Gm37855 lincRNA Interval_156337 chr8 47513766 47514868 + 0 NA intron (ENSMUSG00000038102.15, intron 11 of 28) protein_coding-intron (ENSMUSG00000038102.15, intron 11 of 29) 13713 ENSMUSG00000038102.15 ENSMUSG00000038102 ENSMUST00000131551 Trappc11 protein_coding Interval_160718 chr8 111787155 111790199 + 0 NA intron (ENSMUSG00000031954.6, intron 5 of 6) protein_coding-intron (ENSMUSG00000031954.6, intron 5 of 6) -56541 ENSMUSG00000031955.10 ENSMUSG00000031955 ENSMUST00000212147 Bcar1 protein_coding Interval_124517 chr5 49984889 49985185 + 0 NA intron (ENSMUSG00000029090.12, intron 12 of 18) protein_coding-intron (ENSMUSG00000029090.12, intron 12 of 18) -40479 ENSMUSG00000104634.1 ENSMUSG00000104634 ENSMUST00000198627 Gm42461 TEC Interval_96837 chr2 128743555 128744420 + 0 NA intron (ENSMUSG00000014361.5, intron 4 of 18) protein_coding-intron (ENSMUSG00000014361.5, intron 4 of 18) 9718 ENSMUSG00000085036.1 ENSMUSG00000085036 ENSMUST00000145178 Gm14011 antisense Interval_59489 chr15 54256954 54257254 + 0 NA intron (ENSMUSG00000063727.3, intron 2 of 4) protein_coding-intron (ENSMUSG00000063727.3, intron 2 of 4) 21380 ENSMUSG00000063727.3 ENSMUSG00000063727 ENSMUST00000079772 Tnfrsf11b protein_coding Interval_75110 chr17 63532688 63535182 + 0 NA Intergenic Intergenic -36968 ENSMUSG00000117256.1 ENSMUSG00000117256 ENSMUST00000233628 Gm5497 processed_pseudogene Interval_136873 chr6 62088239 62088455 + 0 NA intron (ENSMUSG00000039578.17, intron 10 of 10) protein_coding-intron (ENSMUSG00000039578.17, intron 9 of 9) 113249 ENSMUSG00000108246.1 ENSMUSG00000108246 ENSMUST00000203440 Gm43896 TEC Interval_73254 chr17 35802918 35804297 + 0 NA Intergenic Intergenic -18077 ENSMUSG00000003541.6 ENSMUSG00000003541 ENSMUST00000003635 Ier3 protein_coding Interval_37147 chr12 58964673 58965402 + 0 NA exon (ENSMUSG00000097443.2, exon 2 of 2) antisense-exon (ENSMUSG00000097443.2, exon 2 of 2) 11948 ENSMUSG00000097443.2 ENSMUSG00000097443 ENSMUST00000180738 Gm17529 antisense Interval_96824 chr2 128619417 128620025 + 0 NA intron (ENSMUSG00000014355.10, intron 2 of 3) protein_coding-intron (ENSMUSG00000014355.10, intron 44 of 47) 8918 ENSMUSG00000014355.10 ENSMUSG00000014355 ENSMUST00000110332 Anapc1 protein_coding Interval_50385 chr14 12338077 12338473 + 0 NA Intergenic Intergenic -4371 ENSMUSG00000077158.1 ENSMUSG00000077158 ENSMUST00000103970 Gm24578 snoRNA Interval_138139 chr6 85410560 85411493 + 0 NA Intergenic Intergenic -13042 ENSMUSG00000068302.8 ENSMUSG00000068302 ENSMUST00000174469 Noto protein_coding Interval_118009 chr4 127960114 127961391 + 0 NA intron (ENSMUSG00000028813.2, intron 1 of 6) protein_coding-intron (ENSMUSG00000028813.2, intron 1 of 6) 10199 ENSMUSG00000028813.2 ENSMUSG00000028813 ENSMUST00000030614 CK137956 protein_coding Interval_19241 chr10 95717259 95717608 + 0 NA promoter-TSS (ENSMUSG00000112519.1) lincRNA-promoter-TSS (ENSMUSG00000112519.1) 74 ENSMUSG00000112519.1 ENSMUSG00000112519 ENSMUST00000217814 Gm47671 lincRNA Interval_44779 chr13 48564507 48566512 + 0 NA Intergenic Intergenic 6875 ENSMUSG00000095214.1 ENSMUSG00000095214 ENSMUST00000104502 Gm25232 snoRNA Interval_150398 chr7 110143886 110144218 + 0 NA TTS (ENSMUSG00000031016.9) protein_coding-TTS (ENSMUSG00000031016.9) 22006 ENSMUSG00000031016.9 ENSMUSG00000031016 ENSMUST00000033326 Wee1 protein_coding Interval_73825 chr17 44188183 44189936 + 0 NA intron (ENSMUSG00000023959.10, intron 1 of 5) protein_coding-intron (ENSMUSG00000023959.10, intron 1 of 5) 54291 ENSMUSG00000023959.10 ENSMUSG00000023959 ENSMUST00000233193 Clic5 protein_coding Interval_56031 chr14 104837720 104837989 + 0 NA intron (ENSMUSG00000115432.1, intron 3 of 4) lincRNA-intron (ENSMUSG00000115432.1, intron 2 of 4) -133573 ENSMUSG00000077425.1 ENSMUSG00000077425 ENSMUST00000104237 Gm24280 snoRNA Interval_159838 chr8 104228449 104228674 + 0 NA intron (ENSMUSG00000035824.7, intron 9 of 10) protein_coding-intron (ENSMUSG00000035824.7, intron 9 of 9) 4814 ENSMUSG00000110551.1 ENSMUSG00000110551 ENSMUST00000211966 Gm45750 processed_pseudogene Interval_41762 chr12 118836151 118837416 + 0 NA Intergenic Intergenic -10803 ENSMUSG00000048562.7 ENSMUSG00000048562 ENSMUST00000223305 Sp8 protein_coding Interval_25727 chr11 51159595 51159779 + 0 NA Intergenic Intergenic 16135 ENSMUSG00000081296.1 ENSMUSG00000081296 ENSMUST00000118235 Gm12203 processed_pseudogene Interval_29227 chr11 81741222 81741484 + 0 NA intron (ENSMUSG00000020704.13, intron 1 of 9) protein_coding-intron (ENSMUSG00000020704.13, intron 1 of 9) -119320 ENSMUSG00000020703.3 ENSMUSG00000020703 ENSMUST00000021044 5530401A14Rik protein_coding Interval_151964 chr7 127830419 127831306 + 0 NA intron (ENSMUSG00000030805.14, intron 1 of 6) protein_coding-intron (ENSMUSG00000030805.14, intron 1 of 6) -11116 ENSMUSG00000030805.14 ENSMUSG00000030805 ENSMUST00000125861 Stx4a protein_coding Interval_12780 chr10 5297501 5297752 + 0 NA intron (ENSMUSG00000096054.3, intron 51 of 145) protein_coding-intron (ENSMUSG00000096054.3, intron 51 of 145) -59547 ENSMUSG00000094906.1 ENSMUSG00000094906 ENSMUST00000104408 Gm23573 snRNA Interval_91518 chr2 40374117 40374896 + 0 NA Intergenic Intergenic 75989 ENSMUSG00000088512.1 ENSMUSG00000088512 ENSMUST00000157887 Gm24467 snoRNA Interval_102060 chr3 16252677 16253519 + 0 NA Intergenic Intergenic 69862 ENSMUSG00000047213.14 ENSMUSG00000047213 ENSMUST00000108346 Ythdf3 protein_coding Interval_24403 chr11 33015134 33015427 + 0 NA Intergenic Intergenic 24423 ENSMUSG00000081076.3 ENSMUSG00000081076 ENSMUST00000121691 Rpsa-ps4 processed_pseudogene Interval_147142 chr7 63823857 63825317 + 0 NA Intergenic Intergenic -2391 ENSMUSG00000108629.1 ENSMUSG00000108629 ENSMUST00000206076 Gm44720 processed_pseudogene Interval_168288 chr9 78436840 78437787 + 0 NA exon (ENSMUSG00000032344.17, exon 2 of 5) protein_coding-exon (ENSMUSG00000032344.17, exon 2 of 5) 5572 ENSMUSG00000032344.17 ENSMUSG00000032344 ENSMUST00000127190 Cgas protein_coding Interval_22191 chr11 7022249 7022640 + 0 NA Intergenic Intergenic -137438 ENSMUSG00000020431.5 ENSMUSG00000020431 ENSMUST00000135398 Adcy1 protein_coding Interval_160352 chr8 108695380 108696869 + 0 NA intron (ENSMUSG00000038872.10, intron 6 of 15) protein_coding-intron (ENSMUSG00000038872.10, intron 6 of 15) -41469 ENSMUSG00000104292.1 ENSMUSG00000104292 ENSMUST00000191614 Gm38042 TEC Interval_172496 chrX 21500205 21500458 + 0 NA TTS (ENSMUSG00000077430.1) snoRNA-TTS (ENSMUSG00000077430.1) 165 ENSMUSG00000077430.1 ENSMUSG00000077430 ENSMUST00000104242 Gm22592 snoRNA Interval_23538 chr11 23258442 23260742 + 0 NA intron (ENSMUSG00000020290.14, intron 2 of 3) protein_coding-intron (ENSMUSG00000020290.14, intron 2 of 25) -25052 ENSMUSG00000020290.14 ENSMUSG00000020290 ENSMUST00000150750 Xpo1 protein_coding Interval_78980 chr18 23537086 23537343 + 0 NA intron (ENSMUSG00000024302.16, intron 3 of 4) protein_coding-intron (ENSMUSG00000024302.16, intron 3 of 11) 40379 ENSMUSG00000024302.16 ENSMUSG00000024302 ENSMUST00000222726 Dtna protein_coding Interval_64476 chr16 11796529 11797338 + 0 NA Intergenic Intergenic 18504 ENSMUSG00000115936.1 ENSMUSG00000115936 ENSMUST00000229695 4833415N18Rik lincRNA Interval_112296 chr4 40182160 40183472 + 0 NA exon (ENSMUSG00000028405.9, exon 12 of 21) protein_coding-exon (ENSMUSG00000028405.9, exon 12 of 21) 19097 ENSMUSG00000028405.9 ENSMUSG00000028405 ENSMUST00000135787 Aco1 protein_coding Interval_97067 chr2 130928062 130928264 + 0 NA intron (ENSMUSG00000027312.14, intron 1 of 2) protein_coding-intron (ENSMUSG00000027312.14, intron 1 of 28) 21232 ENSMUSG00000027312.14 ENSMUSG00000027312 ENSMUST00000151364 Atrn protein_coding Interval_57741 chr15 17937198 17937478 + 0 NA Intergenic Intergenic 1760 ENSMUSG00000088133.1 ENSMUSG00000088133 ENSMUST00000157508 Gm22895 misc_RNA Interval_65279 chr16 21198113 21198913 + 0 NA Intergenic Intergenic -12011 ENSMUSG00000005958.15 ENSMUSG00000005958 ENSMUST00000160053 Ephb3 protein_coding Interval_77673 chr17 93988524 93988772 + 0 NA Intergenic Intergenic 143623 ENSMUSG00000117543.1 ENSMUSG00000117543 ENSMUST00000235005 Gm50004 processed_pseudogene Interval_103451 chr3 41635502 41635849 + 0 NA intron (ENSMUSG00000059834.12, intron 18 of 20) protein_coding-intron (ENSMUSG00000059834.12, intron 18 of 20) 13575 ENSMUSG00000102436.1 ENSMUSG00000102436 ENSMUST00000193690 Gm38047 TEC Interval_31266 chr11 99217066 99218836 + 0 NA intron (ENSMUSG00000037935.16, intron 7 of 10) protein_coding-intron (ENSMUSG00000037935.16, intron 7 of 10) -4508 ENSMUSG00000037935.16 ENSMUSG00000037935 ENSMUST00000128215 Smarce1 protein_coding Interval_143367 chr7 6161776 6162792 + 0 NA Intergenic Intergenic 5768 ENSMUSG00000109108.1 ENSMUSG00000109108 ENSMUST00000209043 Gm36371 bidirectional_promoter_lncRNA Interval_122946 chr5 27722652 27723143 + 0 NA intron (ENSMUSG00000061576.15, intron 23 of 25) protein_coding-intron (ENSMUSG00000061576.15, intron 23 of 25) 68794 ENSMUSG00000002221.11 ENSMUSG00000002221 ENSMUST00000199714 Paxip1 protein_coding Interval_74509 chr17 52559751 52561066 + 0 NA Intergenic Intergenic 42252 ENSMUSG00000098552.1 ENSMUSG00000098552 ENSMUST00000183438 Gm27217 antisense Interval_132338 chr5 144288672 144289150 + 0 NA promoter-TSS (ENSMUSG00000038859.7) protein_coding-promoter-TSS (ENSMUSG00000038859.7) -4 ENSMUSG00000038859.7 ENSMUSG00000038859 ENSMUST00000129287 Baiap2l1 protein_coding Interval_115884 chr4 105690452 105691283 + 0 NA Intergenic Intergenic -99667 ENSMUSG00000083780.8 ENSMUSG00000083780 ENSMUST00000119740 Gm12728 protein_coding Interval_111997 chr4 33112827 33113350 + 0 NA Intergenic Intergenic -19433 ENSMUSG00000028280.9 ENSMUSG00000028280 ENSMUST00000029947 Gabrr1 protein_coding Interval_50649 chr14 17405314 17406201 + 0 NA Intergenic Intergenic 284254 ENSMUSG00000114769.1 ENSMUSG00000114769 ENSMUST00000224880 Gm48312 processed_pseudogene Interval_102313 chr3 21798164 21798860 + 0 NA intron (ENSMUSG00000103441.1, intron 1 of 2) transcribed_processed_pseudogene-intron (ENSMUSG00000103441.1, intron 1 of 2) -35981 ENSMUSG00000103441.1 ENSMUSG00000103441 ENSMUST00000193217 7530428D23Rik transcribed_processed_pseudogene Interval_28032 chr11 72369553 72369738 + 0 NA Intergenic Intergenic -7772 ENSMUSG00000020799.16 ENSMUSG00000020799 ENSMUST00000021155 Tekt1 protein_coding Interval_9629 chr1 160452974 160453355 + 0 NA intron (ENSMUSG00000026721.16, intron 1 of 2) protein_coding-intron (ENSMUSG00000026721.16, intron 15 of 20) -11260 ENSMUSG00000026721.16 ENSMUSG00000026721 ENSMUST00000193810 Rabgap1l protein_coding Interval_19004 chr10 93724085 93724937 + 0 NA intron (ENSMUSG00000020019.4, intron 5 of 9) protein_coding-intron (ENSMUSG00000020019.4, intron 5 of 9) 3696 ENSMUSG00000086891.2 ENSMUSG00000086891 ENSMUST00000131387 Gm15963 antisense Interval_135035 chr6 34877682 34878745 + 0 NA promoter-TSS (ENSMUSG00000046806.13) protein_coding-promoter-TSS (ENSMUSG00000046806.13) -1233 ENSMUSG00000046806.13 ENSMUSG00000046806 ENSMUST00000140458 Cyren protein_coding Interval_144923 chr7 28938369 28938977 + 0 NA intron (ENSMUSG00000109314.1, intron 1 of 1) protein_coding-intron (ENSMUSG00000054808.15, intron 1 of 20) 4855 ENSMUSG00000109314.1 ENSMUSG00000109314 ENSMUST00000208229 Gm44699 sense_intronic Interval_82877 chr18 78142496 78142679 + 0 NA promoter-TSS (ENSMUSG00000059336.14) protein_coding-promoter-TSS (ENSMUSG00000059336.14) -468 ENSMUSG00000059336.14 ENSMUSG00000059336 ENSMUST00000160639 Slc14a1 protein_coding Interval_154505 chr8 18749565 18749807 + 0 NA intron (ENSMUSG00000039842.15, intron 12 of 13) protein_coding-intron (ENSMUSG00000039842.15, intron 12 of 13) -50139 ENSMUSG00000031465.6 ENSMUSG00000031465 ENSMUST00000170200 Angpt2 protein_coding Interval_60321 chr15 72863893 72864700 + 0 NA intron (ENSMUSG00000047921.17, intron 16 of 16) protein_coding-intron (ENSMUSG00000047921.17, intron 16 of 21) -49061 ENSMUSG00000096173.2 ENSMUSG00000096173 ENSMUST00000166418 Gm3150 processed_pseudogene Interval_43733 chr13 35848524 35848712 + 0 NA intron (ENSMUSG00000059288.14, intron 2 of 6) protein_coding-intron (ENSMUSG00000059288.14, intron 5 of 9) 49868 ENSMUSG00000114555.1 ENSMUSG00000114555 ENSMUST00000224988 Gm48706 TEC Interval_53222 chr14 55252990 55253958 + 0 NA Intergenic Intergenic -7415 ENSMUSG00000115683.1 ENSMUSG00000115683 ENSMUST00000228056 Gm49021 processed_pseudogene Interval_85283 chr19 24362758 24363981 + 0 NA intron (ENSMUSG00000024867.14, intron 7 of 13) protein_coding-intron (ENSMUSG00000024867.14, intron 7 of 14) -52640 ENSMUSG00000085003.1 ENSMUSG00000085003 ENSMUST00000126936 Pip5k1bos antisense Interval_174626 chrX 160412935 160413434 + 0 NA intron (ENSMUSG00000031298.15, intron 1 of 7) protein_coding-intron (ENSMUSG00000031298.15, intron 1 of 27) 22456 ENSMUSG00000031298.15 ENSMUSG00000031298 ENSMUST00000112398 Adgrg2 protein_coding Interval_83719 chr19 3934773 3936409 + 0 NA promoter-TSS (ENSMUSG00000036908.17) protein_coding-promoter-TSS (ENSMUSG00000036908.17) -488 ENSMUSG00000036908.17 ENSMUSG00000036908 ENSMUST00000161415 Unc93b1 protein_coding Interval_63780 chr15 103371503 103372114 + 0 NA Intergenic Intergenic -6263 ENSMUSG00000104327.1 ENSMUSG00000104327 ENSMUST00000193409 Gm37322 TEC Interval_36252 chr12 40312192 40312495 + 0 NA Intergenic Intergenic 16635 ENSMUSG00000055917.15 ENSMUSG00000055917 ENSMUST00000221847 Zfp277 protein_coding Interval_4769 chr1 78511665 78512157 + 0 NA promoter-TSS (ENSMUSG00000012187.13) protein_coding-promoter-TSS (ENSMUSG00000012187.13) 99 ENSMUSG00000012187.13 ENSMUSG00000012187 ENSMUST00000125458 Mogat1 protein_coding Interval_86712 chr19 42876086 42876588 + 0 NA intron (ENSMUSG00000074852.4, intron 9 of 11) protein_coding-intron (ENSMUSG00000074852.4, intron 9 of 11) 97227 ENSMUSG00000090235.1 ENSMUSG00000090235 ENSMUST00000160001 Gm16244 processed_transcript Interval_1634 chr1 30575266 30575643 + 0 NA Intergenic Intergenic 144508 ENSMUSG00000053185.2 ENSMUSG00000053185 ENSMUST00000065469 Gm9898 lincRNA Interval_98412 chr2 152176895 152177952 + 0 NA Intergenic Intergenic 8259 ENSMUSG00000081087.1 ENSMUSG00000081087 ENSMUST00000117430 Rps15a-ps7 processed_pseudogene Interval_113513 chr4 55454906 55455354 + 0 NA intron (ENSMUSG00000086346.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000086346.1, intron 1 of 1) 10684 ENSMUSG00000086346.1 ENSMUSG00000086346 ENSMUST00000152190 Gm12510 lincRNA Interval_167904 chr9 74026127 74026705 + 0 NA Intergenic Intergenic -32923 ENSMUSG00000095631.1 ENSMUSG00000095631 ENSMUST00000083215 n-R5s86 rRNA Interval_27677 chr11 69420137 69420666 + 0 NA TTS (ENSMUSG00000005237.14) protein_coding-TTS (ENSMUSG00000005237.14) -16186 ENSMUSG00000018476.7 ENSMUSG00000018476 ENSMUST00000156562 Kdm6b protein_coding Interval_20553 chr10 118867961 118870556 + 0 NA promoter-TSS (ENSMUSG00000028630.9) protein_coding-promoter-TSS (ENSMUSG00000028630.9) -959 ENSMUSG00000028630.9 ENSMUSG00000028630 ENSMUST00000218692 Dyrk2 protein_coding Interval_167908 chr9 74080093 74080558 + 0 NA Intergenic Intergenic 20986 ENSMUSG00000095631.1 ENSMUSG00000095631 ENSMUST00000083215 n-R5s86 rRNA Interval_133718 chr6 9633796 9634286 + 0 NA Intergenic Intergenic 487275 ENSMUSG00000107851.1 ENSMUSG00000107851 ENSMUST00000203681 Gm35736 processed_pseudogene Interval_64428 chr16 11297636 11298242 + 0 NA Intergenic Intergenic -15873 ENSMUSG00000022496.5 ENSMUSG00000022496 ENSMUST00000023140 Tnfrsf17 protein_coding Interval_74364 chr17 49497821 49498793 + 0 NA intron (ENSMUSG00000040260.8, intron 2 of 2) protein_coding-intron (ENSMUSG00000040260.8, intron 2 of 25) 65999 ENSMUSG00000040260.8 ENSMUSG00000040260 ENSMUST00000226030 Daam2 protein_coding Interval_18933 chr10 93242061 93243043 + 0 NA intron (ENSMUSG00000020015.10, intron 16 of 16) protein_coding-intron (ENSMUSG00000020015.10, intron 16 of 16) 3529 ENSMUSG00000020015.10 ENSMUSG00000020015 ENSMUST00000216729 Cdk17 protein_coding Interval_160406 chr8 109051987 109052999 + 0 NA Intergenic Intergenic -22752 ENSMUSG00000097393.8 ENSMUSG00000097393 ENSMUST00000181098 D030068K23Rik lincRNA Interval_173348 chrX 82809223 82809607 + 0 NA Intergenic Intergenic -50977 ENSMUSG00000083587.1 ENSMUSG00000083587 ENSMUST00000120777 Gm14741 processed_pseudogene Interval_124086 chr5 38197299 38198215 + 0 NA intron (ENSMUSG00000029127.15, intron 4 of 5) protein_coding-intron (ENSMUSG00000029127.15, intron 4 of 5) 6040 ENSMUSG00000029127.15 ENSMUSG00000029127 ENSMUST00000137577 Zbtb49 protein_coding Interval_91705 chr2 48445750 48446844 + 0 NA intron (ENSMUSG00000086353.1, intron 1 of 5) lincRNA-intron (ENSMUSG00000086353.1, intron 1 of 5) 10948 ENSMUSG00000086353.1 ENSMUSG00000086353 ENSMUST00000127672 Gm13481 lincRNA Interval_95434 chr2 109311147 109312572 + 0 NA intron (ENSMUSG00000027115.14, intron 12 of 16) protein_coding-intron (ENSMUSG00000027115.14, intron 12 of 16) 19836 ENSMUSG00000027115.14 ENSMUSG00000027115 ENSMUST00000162515 Kif18a protein_coding Interval_99635 chr2 163749649 163750709 + 0 NA promoter-TSS (ENSMUSG00000017697.3) protein_coding-promoter-TSS (ENSMUSG00000017697.3) -19313 ENSMUSG00000017697.3 ENSMUSG00000017697 ENSMUST00000156939 Ada protein_coding Interval_105558 chr3 87748525 87749448 + 0 NA promoter-TSS (ENSMUSG00000023084.11) protein_coding-promoter-TSS (ENSMUSG00000023084.11) -7938 ENSMUSG00000023084.11 ENSMUSG00000023084 ENSMUST00000174208 Lrrc71 protein_coding Interval_55798 chr14 100260358 100260924 + 0 NA intron (ENSMUSG00000072294.5, intron 1 of 1) protein_coding-intron (ENSMUSG00000072294.5, intron 1 of 1) -25524 ENSMUSG00000110273.1 ENSMUSG00000110273 ENSMUST00000211525 Gm41231 lincRNA Interval_87456 chr19 51899268 51899958 + 0 NA intron (ENSMUSG00000117867.1, intron 3 of 4) lincRNA-intron (ENSMUSG00000117867.1, intron 3 of 4) -14350 ENSMUSG00000118173.1 ENSMUSG00000118173 ENSMUST00000235616 Gm50329 lincRNA Interval_47481 chr13 85169847 85170280 + 0 NA Intergenic Intergenic 29343 ENSMUSG00000114954.1 ENSMUSG00000114954 ENSMUST00000224780 Gm47746 processed_pseudogene Interval_81116 chr18 54114679 54114871 + 0 NA Intergenic Intergenic -83467 ENSMUSG00000117769.1 ENSMUSG00000117769 ENSMUST00000237377 Gm8594 processed_pseudogene Interval_133252 chr5 150877637 150877814 + 0 NA intron (ENSMUSG00000107047.1, intron 1 of 3) lincRNA-intron (ENSMUSG00000107047.1, intron 1 of 3) 4917 ENSMUSG00000107047.1 ENSMUSG00000107047 ENSMUST00000200887 Gm43298 lincRNA Interval_49630 chr13 113663176 113664005 + 0 NA promoter-TSS (ENSMUSG00000051456.4) protein_coding-promoter-TSS (ENSMUSG00000051456.4) 86 ENSMUSG00000051456.4 ENSMUSG00000051456 ENSMUST00000054650 Hspb3 protein_coding Interval_87264 chr19 47275858 47276190 + 0 NA intron (ENSMUSG00000053617.12, intron 4 of 7) protein_coding-intron (ENSMUSG00000053617.12, intron 11 of 14) -2435 ENSMUSG00000098786.1 ENSMUSG00000098786 ENSMUST00000183658 Mir6995 miRNA Interval_139037 chr6 94464344 94464895 + 0 NA Intergenic Intergenic 19779 ENSMUSG00000107781.1 ENSMUSG00000107781 ENSMUST00000203041 Gm44315 processed_pseudogene Interval_111048 chr4 11492223 11492975 + 0 NA intron (ENSMUSG00000040720.15, intron 1 of 24) protein_coding-intron (ENSMUSG00000040720.15, intron 1 of 12) 6556 ENSMUSG00000040720.15 ENSMUSG00000040720 ENSMUST00000108307 Virma protein_coding Interval_55030 chr14 77209650 77210270 + 0 NA intron (ENSMUSG00000022012.9, intron 1 of 2) protein_coding-intron (ENSMUSG00000022012.9, intron 1 of 18) 42354 ENSMUSG00000063556.5 ENSMUSG00000063556 ENSMUST00000099431 Gm10132 processed_pseudogene Interval_113578 chr4 56807933 56809270 + 0 NA exon (ENSMUSG00000038827.11, exon 6 of 6) protein_coding-exon (ENSMUSG00000038827.11, exon 6 of 6) 6256 ENSMUSG00000038827.11 ENSMUSG00000038827 ENSMUST00000147763 Abitram protein_coding Interval_160864 chr8 114205237 114206839 + 0 NA intron (ENSMUSG00000046844.6, intron 1 of 1) protein_coding-intron (ENSMUSG00000046844.6, intron 1 of 8) 404 ENSMUSG00000046844.6 ENSMUSG00000046844 ENSMUST00000124143 Vat1l protein_coding Interval_6913 chr1 120606814 120607241 + 0 NA exon (ENSMUSG00000058665.8, exon 2 of 2) protein_coding-exon (ENSMUSG00000058665.8, exon 2 of 2) 4609 ENSMUSG00000058665.8 ENSMUSG00000058665 ENSMUST00000079721 En1 protein_coding Interval_137396 chr6 71899660 71900978 + 0 NA intron (ENSMUSG00000063884.6, intron 7 of 24) protein_coding-intron (ENSMUSG00000063884.6, intron 7 of 23) 8431 ENSMUSG00000063884.6 ENSMUSG00000063884 ENSMUST00000205420 Ptcd3 protein_coding Interval_73223 chr17 35659132 35660348 + 0 NA TTS (ENSMUSG00000038838.15) protein_coding-TTS (ENSMUSG00000038838.15) 310 ENSMUSG00000038838.15 ENSMUSG00000038838 ENSMUST00000165144 Vars2 protein_coding Interval_68810 chr16 87192820 87193760 + 0 NA Intergenic Intergenic -64851 ENSMUSG00000116979.1 ENSMUSG00000116979 ENSMUST00000232056 Gm32865 lincRNA Interval_68214 chr16 68547404 68548181 + 0 NA Intergenic Intergenic 36857 ENSMUSG00000116859.1 ENSMUSG00000116859 ENSMUST00000231403 Gm49651 processed_pseudogene Interval_109991 chr3 152342160 152342934 + 0 NA Intergenic Intergenic -2163 ENSMUSG00000054942.13 ENSMUSG00000054942 ENSMUST00000200241 Miga1 protein_coding Interval_64149 chr16 8728162 8728779 + 0 NA intron (ENSMUSG00000022710.17, intron 2 of 31) protein_coding-intron (ENSMUSG00000022710.17, intron 1 of 30) -29938 ENSMUSG00000022710.17 ENSMUSG00000022710 ENSMUST00000159509 Usp7 protein_coding Interval_100137 chr2 167265970 167266763 + 0 NA Intergenic Intergenic 15411 ENSMUSG00000083661.1 ENSMUSG00000083661 ENSMUST00000118980 Gm11473 processed_pseudogene Interval_11586 chr1 182990422 182991536 + 0 NA Intergenic Intergenic 14703 ENSMUSG00000104367.1 ENSMUSG00000104367 ENSMUST00000195603 Gm38079 lincRNA Interval_77042 chr17 85932656 85934056 + 0 NA Intergenic Intergenic -4777 ENSMUSG00000117501.1 ENSMUSG00000117501 ENSMUST00000234707 Gm30117 lincRNA Interval_7631 chr1 132653327 132653808 + 0 NA intron (ENSMUSG00000026442.14, intron 1 of 19) protein_coding-intron (ENSMUSG00000026442.14, intron 2 of 26) -29055 ENSMUSG00000026442.14 ENSMUSG00000026442 ENSMUST00000189219 Nfasc protein_coding Interval_53784 chr14 61734660 61737379 + 0 NA Intergenic Intergenic 52509 ENSMUSG00000104187.1 ENSMUSG00000104187 ENSMUST00000194021 Gm37820 TEC Interval_150904 chr7 116260831 116261076 + 0 NA intron (ENSMUSG00000045659.18, intron 3 of 18) protein_coding-intron (ENSMUSG00000045659.18, intron 3 of 26) 21790 ENSMUSG00000108650.1 ENSMUSG00000108650 ENSMUST00000205675 Gm44867 sense_intronic Interval_83846 chr19 5060616 5061095 + 0 NA Intergenic Intergenic -7223 ENSMUSG00000056481.7 ENSMUSG00000056481 ENSMUST00000070630 Cd248 protein_coding Interval_165845 chr9 53770957 53772444 + 0 NA exon (ENSMUSG00000042195.9, exon 1 of 8) protein_coding-exon (ENSMUSG00000042195.9, exon 1 of 8) 25631 ENSMUSG00000111084.1 ENSMUSG00000111084 ENSMUST00000213450 Gm48292 processed_pseudogene Interval_56773 chr14 121992680 121993036 + 0 NA intron (ENSMUSG00000041765.6, intron 3 of 4) protein_coding-intron (ENSMUSG00000041765.6, intron 6 of 8) -27753 ENSMUSG00000051212.8 ENSMUSG00000051212 ENSMUST00000227267 Gpr183 protein_coding Interval_124746 chr5 53646000 53647200 + 0 NA TTS (ENSMUSG00000039191.12) protein_coding-TTS (ENSMUSG00000039191.12) 7968 ENSMUSG00000039191.12 ENSMUSG00000039191 ENSMUST00000202092 Rbpj protein_coding Interval_53020 chr14 53580295 53580563 + 0 NA Intergenic Intergenic -6071 ENSMUSG00000104738.1 ENSMUSG00000104738 ENSMUST00000198999 Trav3-2 TR_V_pseudogene Interval_150323 chr7 109595041 109595264 + 0 NA intron (ENSMUSG00000031024.13, intron 2 of 2) protein_coding-intron (ENSMUSG00000031024.13, intron 1 of 19) 21601 ENSMUSG00000031024.13 ENSMUSG00000031024 ENSMUST00000208734 Denn2b protein_coding Interval_168173 chr9 77754427 77755166 + 0 NA exon (ENSMUSG00000032350.9, exon 1 of 16) protein_coding-exon (ENSMUSG00000032350.9, exon 1 of 16) -11346 ENSMUSG00000032350.9 ENSMUSG00000032350 ENSMUST00000216848 Gclc protein_coding Interval_967 chr1 13531200 13532010 + 0 NA Intergenic Intergenic 58270 ENSMUSG00000025935.10 ENSMUSG00000025935 ENSMUST00000188377 Tram1 protein_coding Interval_116239 chr4 108976412 108977091 + 0 NA Intergenic Intergenic -4674 ENSMUSG00000086483.1 ENSMUSG00000086483 ENSMUST00000140919 8030443G20Rik antisense Interval_98800 chr2 155082176 155082942 + 0 NA intron (ENSMUSG00000109877.1, intron 1 of 1) antisense-intron (ENSMUSG00000109877.1, intron 1 of 1) 1220 ENSMUSG00000109877.1 ENSMUSG00000109877 ENSMUST00000210144 Gm45609 antisense Interval_8082 chr1 135615689 135616464 + 0 NA intron (ENSMUSG00000009418.16, intron 1 of 30) protein_coding-intron (ENSMUSG00000009418.16, intron 1 of 1) 31303 ENSMUSG00000054412.5 ENSMUSG00000054412 ENSMUST00000067468 Gm4793 antisense Interval_67580 chr16 51285038 51285615 + 0 NA Intergenic Intergenic 78506 ENSMUSG00000081453.1 ENSMUSG00000081453 ENSMUST00000118650 Gm6767 processed_pseudogene Interval_169128 chr9 93083009 93083274 + 0 NA Intergenic Intergenic -77402 ENSMUSG00000100294.6 ENSMUSG00000100294 ENSMUST00000188921 1700034K08Rik lincRNA Interval_40256 chr12 102791883 102792379 + 0 NA intron (ENSMUSG00000041702.7, intron 9 of 11) protein_coding-intron (ENSMUSG00000041702.7, intron 8 of 10) -27419 ENSMUSG00000114106.1 ENSMUSG00000114106 ENSMUST00000221771 Gm47042 processed_pseudogene Interval_137579 chr6 73523607 73524128 + 0 NA Intergenic Intergenic 5371 ENSMUSG00000107639.1 ENSMUSG00000107639 ENSMUST00000204929 Gm4374 processed_pseudogene Interval_99523 chr2 162955120 162955919 + 0 NA intron (ENSMUSG00000035576.13, intron 8 of 20) protein_coding-intron (ENSMUSG00000035576.13, intron 8 of 22) 12044 ENSMUSG00000035576.13 ENSMUSG00000035576 ENSMUST00000125296 L3mbtl1 protein_coding Interval_19967 chr10 111562580 111563113 + 0 NA Intergenic Intergenic 31427 ENSMUSG00000097082.1 ENSMUSG00000097082 ENSMUST00000181547 4933440J02Rik lincRNA Interval_72963 chr17 33837148 33837771 + 0 NA intron (ENSMUSG00000041881.13, intron 2 of 2) protein_coding-intron (ENSMUSG00000041881.13, intron 3 of 3) -5694 ENSMUSG00000002308.16 ENSMUSG00000002308 ENSMUST00000087559 Cd320 protein_coding Interval_143019 chr6 148442761 148444863 + 0 NA intron (ENSMUSG00000030306.14, intron 1 of 18) protein_coding-intron (ENSMUSG00000030306.14, intron 1 of 19) -2177 ENSMUSG00000030306.14 ENSMUSG00000030306 ENSMUST00000203991 Tmtc1 protein_coding Interval_58551 chr15 36015376 36017192 + 0 NA intron (ENSMUSG00000037627.16, intron 2 of 6) protein_coding-intron (ENSMUSG00000037627.16, intron 22 of 27) -12614 ENSMUSG00000088786.1 ENSMUSG00000088786 ENSMUST00000158161 Gm25372 misc_RNA Interval_127508 chr5 104721902 104723879 + 0 NA Intergenic Intergenic -52889 ENSMUSG00000048334.8 ENSMUSG00000048334 ENSMUST00000055593 Gm8258 processed_pseudogene Interval_155929 chr8 41092026 41092236 + 0 NA intron (ENSMUSG00000045636.16, intron 1 of 1) protein_coding-intron (ENSMUSG00000045636.16, intron 1 of 13) 39021 ENSMUSG00000085672.1 ENSMUSG00000085672 ENSMUST00000125903 Gm16193 antisense Interval_102923 chr3 32833529 32834293 + 0 NA intron (ENSMUSG00000056900.13, intron 1 of 14) protein_coding-intron (ENSMUSG00000056900.13, intron 1 of 20) 16200 ENSMUSG00000056900.13 ENSMUSG00000056900 ENSMUST00000156769 Usp13 protein_coding Interval_95466 chr2 109859760 109861420 + 0 NA Intergenic Intergenic -30280 ENSMUSG00000027162.7 ENSMUSG00000027162 ENSMUST00000151163 Lin7c protein_coding Interval_22352 chr11 9025134 9025350 + 0 NA intron (ENSMUSG00000040985.13, intron 5 of 8) protein_coding-intron (ENSMUSG00000040985.13, intron 6 of 9) -14114 ENSMUSG00000020413.11 ENSMUSG00000020413 ENSMUST00000127578 Hus1 protein_coding Interval_23749 chr11 25788386 25788563 + 0 NA intron (ENSMUSG00000032985.15, intron 2 of 6) protein_coding-intron (ENSMUSG00000032985.15, intron 2 of 6) -19333 ENSMUSG00000032985.15 ENSMUSG00000032985 ENSMUST00000125987 5730522E02Rik protein_coding Interval_10376 chr1 170109697 170110827 + 0 NA exon (ENSMUSG00000026674.9, exon 1 of 18) protein_coding-exon (ENSMUSG00000026674.9, exon 1 of 18) 500 ENSMUSG00000026674.9 ENSMUSG00000026674 ENSMUST00000194619 Ddr2 protein_coding Interval_139080 chr6 94879506 94880507 + 0 NA Intergenic Intergenic -31173 ENSMUSG00000107940.1 ENSMUSG00000107940 ENSMUST00000204329 Gm44100 processed_pseudogene Interval_67460 chr16 49000027 49000318 + 0 NA promoter-TSS (ENSMUSG00000033031.13) protein_coding-promoter-TSS (ENSMUSG00000033031.13) -15665 ENSMUSG00000033031.13 ENSMUSG00000033031 ENSMUST00000149004 Cip2a protein_coding Interval_128637 chr5 114431925 114432188 + 0 NA exon (ENSMUSG00000029575.17, exon 9 of 9) protein_coding-exon (ENSMUSG00000029575.17, exon 9 of 9) 11936 ENSMUSG00000029575.17 ENSMUSG00000029575 ENSMUST00000123256 Mmab protein_coding Interval_80254 chr18 38570289 38571219 + 0 NA Intergenic Intergenic -12096 ENSMUSG00000118296.1 ENSMUSG00000118296 ENSMUST00000236625 Gm19100 processed_pseudogene Interval_146710 chr7 49608800 49609513 + 0 NA exon (ENSMUSG00000052512.17, exon 38 of 38) protein_coding-exon (ENSMUSG00000052512.17, exon 38 of 38) 27693 ENSMUSG00000030507.6 ENSMUSG00000030507 ENSMUST00000032717 Dbx1 protein_coding Interval_41702 chr12 117874990 117875544 + 0 NA intron (ENSMUSG00000021175.15, intron 6 of 6) protein_coding-intron (ENSMUSG00000021175.15, intron 7 of 9) 31379 ENSMUSG00000021175.15 ENSMUSG00000021175 ENSMUST00000177339 Cdca7l protein_coding Interval_6993 chr1 121605311 121605565 + 0 NA Intergenic Intergenic 40411 ENSMUSG00000102006.1 ENSMUSG00000102006 ENSMUST00000185259 Gm28591 processed_pseudogene Interval_86383 chr19 39785676 39785932 + 0 NA intron (ENSMUSG00000025004.16, intron 6 of 8) protein_coding-intron (ENSMUSG00000025004.16, intron 6 of 8) 27010 ENSMUSG00000025004.16 ENSMUSG00000025004 ENSMUST00000162507 Cyp2c40 protein_coding Interval_83625 chr19 3295196 3296001 + 0 NA Intergenic Intergenic 6678 ENSMUSG00000099261.1 ENSMUSG00000099261 ENSMUST00000185105 Mir6984 miRNA Interval_133871 chr6 13852526 13854752 + 0 NA Intergenic Intergenic -14144 ENSMUSG00000048216.13 ENSMUSG00000048216 ENSMUST00000127072 Gpr85 protein_coding Interval_105412 chr3 86084675 86084910 + 0 NA exon (ENSMUSG00000028082.14, exon 1 of 15) protein_coding-exon (ENSMUSG00000028082.14, exon 1 of 15) 302 ENSMUSG00000028082.14 ENSMUSG00000028082 ENSMUST00000183202 Sh3d19 protein_coding Interval_58842 chr15 38535007 38536149 + 0 NA Intergenic Intergenic 16792 ENSMUSG00000115546.1 ENSMUSG00000115546 ENSMUST00000228225 Gm49077 antisense Interval_24699 chr11 35976209 35976894 + 0 NA intron (ENSMUSG00000018849.6, intron 1 of 22) protein_coding-intron (ENSMUSG00000018849.6, intron 1 of 22) -19503 ENSMUSG00000081571.1 ENSMUSG00000081571 ENSMUST00000117261 Gm12125 processed_pseudogene Interval_163711 chr9 24780912 24781683 + 0 NA intron (ENSMUSG00000111275.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000111275.1, intron 1 of 2) 4830 ENSMUSG00000111275.1 ENSMUSG00000111275 ENSMUST00000213183 Gm29824 lincRNA Interval_166347 chr9 58487191 58490328 + 0 NA promoter-TSS (ENSMUSG00000066607.5) protein_coding-promoter-TSS (ENSMUSG00000066607.5) -203 ENSMUSG00000066607.5 ENSMUSG00000066607 ENSMUST00000216294 Insyn1 protein_coding Interval_98304 chr2 150903890 150905099 + 0 NA promoter-TSS (ENSMUSG00000027454.10) protein_coding-promoter-TSS (ENSMUSG00000027454.10) -906 ENSMUSG00000027454.10 ENSMUSG00000027454 ENSMUST00000123217 Gins1 protein_coding Interval_16277 chr10 61877743 61878424 + 0 NA intron (ENSMUSG00000058806.15, intron 18 of 40) protein_coding-intron (ENSMUSG00000058806.15, intron 15 of 33) -28872 ENSMUSG00000058806.15 ENSMUSG00000058806 ENSMUST00000153120 Col13a1 protein_coding Interval_84942 chr19 19417267 19417587 + 0 NA Intergenic Intergenic 140956 ENSMUSG00000118109.1 ENSMUSG00000118109 ENSMUST00000237424 Gm41815 lincRNA Interval_137441 chr6 72473406 72473937 + 0 NA Intergenic Intergenic -34128 ENSMUSG00000053907.10 ENSMUSG00000053907 ENSMUST00000206783 Mat2a protein_coding Interval_35788 chr12 29664328 29665468 + 0 NA intron (ENSMUSG00000061911.15, intron 3 of 4) protein_coding-intron (ENSMUSG00000061911.15, intron 3 of 24) 21547 ENSMUSG00000112663.1 ENSMUSG00000112663 ENSMUST00000218114 C630031E19Rik antisense Interval_21011 chr10 123209853 123210656 + 0 NA Intergenic Intergenic -13259 ENSMUSG00000020124.10 ENSMUSG00000020124 ENSMUST00000219619 Usp15 protein_coding Interval_96869 chr2 129129221 129130730 + 0 NA exon (ENSMUSG00000037938.4, exon 1 of 2) protein_coding-exon (ENSMUSG00000037938.4, exon 1 of 2) 171 ENSMUSG00000037938.4 ENSMUSG00000037938 ENSMUST00000137881 Chchd5 protein_coding Interval_143385 chr7 6276541 6276738 + 0 NA intron (ENSMUSG00000053367.15, intron 11 of 13) protein_coding-intron (ENSMUSG00000053367.15, intron 13 of 15) 6971 ENSMUSG00000108949.1 ENSMUSG00000108949 ENSMUST00000208604 Gm45069 lincRNA Interval_43828 chr13 37439893 37440100 + 0 NA intron (ENSMUSG00000114791.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000114791.1, intron 1 of 1) 458 ENSMUSG00000114791.1 ENSMUSG00000114791 ENSMUST00000224029 Gm47730 lincRNA Interval_143799 chr7 16387098 16388212 + 0 NA exon (ENSMUSG00000052833.9, exon 1 of 9) protein_coding-exon (ENSMUSG00000052833.9, exon 1 of 9) 151 ENSMUSG00000052833.9 ENSMUSG00000052833 ENSMUST00000209749 Sae1 protein_coding Interval_24708 chr11 36020590 36020797 + 0 NA intron (ENSMUSG00000049336.16, intron 27 of 28) protein_coding-intron (ENSMUSG00000049336.16, intron 27 of 28) 24639 ENSMUSG00000081571.1 ENSMUSG00000081571 ENSMUST00000117261 Gm12125 processed_pseudogene Interval_167441 chr9 69376983 69377187 + 0 NA intron (ENSMUSG00000032238.17, intron 9 of 9) protein_coding-intron (ENSMUSG00000032238.17, intron 10 of 10) -12838 ENSMUSG00000086648.1 ENSMUSG00000086648 ENSMUST00000152570 Gm15511 antisense Interval_172916 chrX 53724759 53725631 + 0 NA intron (ENSMUSG00000055555.1, intron 1 of 4) protein_coding-intron (ENSMUSG00000055555.1, intron 1 of 4) 369 ENSMUSG00000055555.1 ENSMUSG00000055555 ENSMUST00000069209 Ct55 protein_coding Interval_75570 chr17 68213561 68213848 + 0 NA Intergenic Intergenic -25968 ENSMUSG00000117193.1 ENSMUSG00000117193 ENSMUST00000233387 Gm36252 lincRNA Interval_108617 chr3 129586816 129587009 + 0 NA intron (ENSMUSG00000041220.10, intron 1 of 2) protein_coding-intron (ENSMUSG00000041220.10, intron 2 of 4) 48771 ENSMUSG00000106092.1 ENSMUSG00000106092 ENSMUST00000200283 Gm43072 TEC Interval_101014 chr2 174261098 174262212 + 0 NA Intergenic Intergenic 5470 ENSMUSG00000065521.1 ENSMUSG00000065521 ENSMUST00000083587 Mir296 miRNA Interval_128593 chr5 114205988 114206800 + 0 NA intron (ENSMUSG00000042010.16, intron 6 of 40) protein_coding-intron (ENSMUSG00000042010.16, intron 17 of 51) 30488 ENSMUSG00000042010.16 ENSMUSG00000042010 ENSMUST00000142489 Acacb protein_coding Interval_142354 chr6 140816079 140817253 + 0 NA Intergenic Intergenic -31962 ENSMUSG00000108039.1 ENSMUSG00000108039 ENSMUST00000203498 Gm43925 processed_pseudogene Interval_119729 chr4 139552260 139553207 + 0 NA intron (ENSMUSG00000041025.15, intron 4 of 11) protein_coding-intron (ENSMUSG00000041025.15, intron 3 of 10) -21987 ENSMUSG00000041025.15 ENSMUSG00000041025 ENSMUST00000174078 Iffo2 protein_coding Interval_174635 chrX 160994023 160995504 + 0 NA promoter-TSS (ENSMUSG00000031292.14) protein_coding-promoter-TSS (ENSMUSG00000031292.14) -87711 ENSMUSG00000055691.5 ENSMUSG00000055691 ENSMUST00000069417 Gja6 protein_coding Interval_122638 chr5 24387295 24388499 + 0 NA promoter-TSS (ENSMUSG00000038295.14) protein_coding-promoter-TSS (ENSMUSG00000038295.14) 2738 ENSMUSG00000038295.14 ENSMUSG00000038295 ENSMUST00000128831 Atg9b protein_coding Interval_142402 chr6 141590382 141592160 + 0 NA Intergenic Intergenic -43187 ENSMUSG00000030236.10 ENSMUSG00000030236 ENSMUST00000160179 Slco1b2 protein_coding Interval_6068 chr1 95751288 95751734 + 0 NA Intergenic Intergenic 13315 ENSMUSG00000102718.1 ENSMUSG00000102718 ENSMUST00000194989 Gm37761 TEC Interval_93531 chr2 73870100 73870470 + 0 NA intron (ENSMUSG00000027104.18, intron 3 of 11) protein_coding-intron (ENSMUSG00000027104.18, intron 3 of 13) -7047 ENSMUSG00000027104.18 ENSMUSG00000027104 ENSMUST00000154965 Atf2 protein_coding Interval_21621 chr11 3288601 3290814 + 0 NA promoter-TSS (ENSMUSG00000020453.17) protein_coding-promoter-TSS (ENSMUSG00000020453.17) -8577 ENSMUSG00000020453.17 ENSMUSG00000020453 ENSMUST00000154319 Patz1 protein_coding Interval_170585 chr9 109024891 109025588 + 0 NA intron (ENSMUSG00000025648.18, intron 10 of 13) protein_coding-intron (ENSMUSG00000025648.18, intron 10 of 13) -25916 ENSMUSG00000025647.16 ENSMUSG00000025647 ENSMUST00000199288 Shisa5 protein_coding Interval_36971 chr12 55794101 55794644 + 0 NA intron (ENSMUSG00000021027.17, intron 3 of 39) protein_coding-intron (ENSMUSG00000021027.17, intron 3 of 40) 22155 ENSMUSG00000112393.1 ENSMUSG00000112393 ENSMUST00000217762 Gm48655 TEC Interval_15438 chr10 46615804 46616277 + 0 NA Intergenic Intergenic 42598 ENSMUSG00000077361.1 ENSMUSG00000077361 ENSMUST00000104173 Gm23481 snoRNA Interval_85702 chr19 29805007 29806728 + 0 NA promoter-TSS (ENSMUSG00000046138.15) protein_coding-promoter-TSS (ENSMUSG00000046138.15) 122 ENSMUSG00000046138.15 ENSMUSG00000046138 ENSMUST00000176773 9930021J03Rik protein_coding Interval_9157 chr1 154152514 154152826 + 0 NA Intergenic Intergenic -34719 ENSMUSG00000100627.6 ENSMUSG00000100627 ENSMUST00000190485 A830008E24Rik lincRNA Interval_102004 chr3 14862713 14863815 + 0 NA promoter-TSS (ENSMUSG00000027559.5) protein_coding-promoter-TSS (ENSMUSG00000027559.5) -5914 ENSMUSG00000027559.5 ENSMUSG00000027559 ENSMUST00000195834 Car3 protein_coding Interval_82412 chr18 73805327 73805528 + 0 NA intron (ENSMUSG00000024556.4, intron 1 of 3) protein_coding-intron (ENSMUSG00000024556.4, intron 1 of 15) 10022 ENSMUSG00000024556.4 ENSMUSG00000024556 ENSMUST00000235595 Me2 protein_coding Interval_27561 chr11 68723993 68724717 + 0 NA intron (ENSMUSG00000020900.15, intron 3 of 12) protein_coding-intron (ENSMUSG00000020900.15, intron 3 of 42) 32201 ENSMUSG00000020900.15 ENSMUSG00000020900 ENSMUST00000139059 Myh10 protein_coding Interval_52956 chr14 52278769 52280019 + 0 NA promoter-TSS (ENSMUSG00000022159.16) protein_coding-promoter-TSS (ENSMUSG00000022159.16) 2863 ENSMUSG00000088979.1 ENSMUSG00000088979 ENSMUST00000158354 Gm23758 snoRNA Interval_152212 chr7 130673325 130674719 + 0 NA intron (ENSMUSG00000030852.18, intron 2 of 3) protein_coding-intron (ENSMUSG00000030852.18, intron 3 of 20) -19630 ENSMUSG00000109225.1 ENSMUSG00000109225 ENSMUST00000207466 4930513N20Rik TEC Interval_120522 chr4 149124779 149125857 + 0 NA exon (ENSMUSG00000028971.4, exon 2 of 2) protein_coding-exon (ENSMUSG00000028971.4, exon 2 of 2) 1445 ENSMUSG00000028971.4 ENSMUSG00000028971 ENSMUST00000030815 Cort protein_coding Interval_74425 chr17 50227486 50227701 + 0 NA TTS (ENSMUSG00000117077.1) processed_pseudogene-TTS (ENSMUSG00000117077.1) 776 ENSMUSG00000117077.1 ENSMUSG00000117077 ENSMUST00000233703 Gm18735 processed_pseudogene Interval_96551 chr2 125604763 125605213 + 0 NA intron (ENSMUSG00000068394.4, intron 10 of 27) protein_coding-intron (ENSMUSG00000068394.4, intron 10 of 27) 20125 ENSMUSG00000068394.4 ENSMUSG00000068394 ENSMUST00000089776 Cep152 protein_coding Interval_132576 chr5 146416755 146417307 + 0 NA intron (ENSMUSG00000029636.11, intron 1 of 9) protein_coding-intron (ENSMUSG00000029636.11, intron 1 of 9) -38578 ENSMUSG00000029636.11 ENSMUSG00000029636 ENSMUST00000238592 Wasf3 protein_coding Interval_115 GL456239.1 22665 22875 + 0 NA NA NA NA NA Interval_101359 chr2 180765913 180768271 + 0 NA intron (ENSMUSG00000087550.1, intron 2 of 2) processed_transcript-intron (ENSMUSG00000087550.1, intron 2 of 2) 8311 ENSMUSG00000087550.1 ENSMUSG00000087550 ENSMUST00000154524 Gm14343 processed_transcript Interval_97898 chr2 145160704 145161559 + 0 NA Intergenic Intergenic -6788 ENSMUSG00000063873.10 ENSMUSG00000063873 ENSMUST00000131123 Slc24a3 protein_coding Interval_93296 chr2 71744341 71745963 + 0 NA promoter-TSS (ENSMUSG00000027111.16) protein_coding-promoter-TSS (ENSMUSG00000027111.16) -2355 ENSMUSG00000086641.1 ENSMUSG00000086641 ENSMUST00000127600 Gm13663 processed_transcript Interval_21934 chr11 5280451 5281313 + 0 NA exon (ENSMUSG00000041961.14, exon 8 of 9) protein_coding-exon (ENSMUSG00000041961.14, exon 8 of 9) 6797 ENSMUSG00000118486.1 ENSMUSG00000118486 ENSMUST00000238466 Gm30172 unitary_pseudogene Interval_89603 chr2 23184313 23184858 + 0 NA intron (ENSMUSG00000026775.9, intron 9 of 18) protein_coding-intron (ENSMUSG00000026775.9, intron 9 of 18) -17448 ENSMUSG00000081648.1 ENSMUSG00000081648 ENSMUST00000117205 Gm13423 processed_pseudogene Interval_80916 chr18 50170949 50171310 + 0 NA intron (ENSMUSG00000024507.6, intron 15 of 23) protein_coding-intron (ENSMUSG00000024507.6, intron 15 of 23) 36334 ENSMUSG00000085939.3 ENSMUSG00000085939 ENSMUST00000154992 Cd63-ps transcribed_processed_pseudogene Interval_113622 chr4 57067137 57067651 + 0 NA intron (ENSMUSG00000028434.12, intron 2 of 3) protein_coding-intron (ENSMUSG00000028434.12, intron 14 of 15) 3165 ENSMUSG00000028434.12 ENSMUSG00000028434 ENSMUST00000133859 Epb41l4b protein_coding Interval_136213 chr6 52078442 52079389 + 0 NA Intergenic Intergenic -24079 ENSMUSG00000085412.7 ENSMUSG00000085412 ENSMUST00000155758 Halr1 lincRNA Interval_13039 chr10 9803126 9803997 + 0 NA intron (ENSMUSG00000019790.17, intron 16 of 25) protein_coding-intron (ENSMUSG00000019790.17, intron 16 of 27) 16024 ENSMUSG00000019790.17 ENSMUSG00000019790 ENSMUST00000219200 Stxbp5 protein_coding Interval_30356 chr11 93830368 93830584 + 0 NA Intergenic Intergenic 45667 ENSMUSG00000054079.12 ENSMUSG00000054079 ENSMUST00000134807 Utp18 protein_coding Interval_162218 chr8 126075036 126075666 + 0 NA Intergenic Intergenic -14827 ENSMUSG00000110437.1 ENSMUSG00000110437 ENSMUST00000212698 Gm45876 TEC Interval_55072 chr14 77708396 77708630 + 0 NA intron (ENSMUSG00000022012.9, intron 13 of 13) protein_coding-intron (ENSMUSG00000022012.9, intron 18 of 18) -72461 ENSMUSG00000115257.1 ENSMUSG00000115257 ENSMUST00000227970 Gm30467 lincRNA Interval_14061 chr10 26371139 26371714 + 0 NA intron (ENSMUSG00000039089.15, intron 1 of 8) protein_coding-intron (ENSMUSG00000039089.15, intron 1 of 21) 12668 ENSMUSG00000112045.1 ENSMUSG00000112045 ENSMUST00000217918 Gm5649 processed_pseudogene Interval_96890 chr2 129241212 129242778 + 0 NA Intergenic Intergenic -4381 ENSMUSG00000085485.1 ENSMUSG00000085485 ENSMUST00000141964 Gm14024 antisense Interval_98338 chr2 151593472 151594184 + 0 NA exon (ENSMUSG00000027457.15, exon 6 of 6) protein_coding-exon (ENSMUSG00000027457.15, exon 6 of 6) 21206 ENSMUSG00000027456.8 ENSMUSG00000027456 ENSMUST00000028950 Sdcbp2 protein_coding Interval_53602 chr14 59805528 59806027 + 0 NA intron (ENSMUSG00000021983.16, intron 26 of 35) protein_coding-intron (ENSMUSG00000021983.16, intron 26 of 35) 163229 ENSMUSG00000114593.1 ENSMUSG00000114593 ENSMUST00000224256 Gm19716 transcribed_processed_pseudogene Interval_38952 chr12 84056061 84056610 + 0 NA intron (ENSMUSG00000021228.15, intron 1 of 2) protein_coding-intron (ENSMUSG00000021228.15, intron 2 of 3) -2528 ENSMUSG00000097762.1 ENSMUSG00000097762 ENSMUST00000180751 4732463B04Rik antisense Interval_43291 chr13 28799189 28799435 + 0 NA intron (ENSMUSG00000085936.7, intron 2 of 7) processed_transcript-intron (ENSMUSG00000085936.7, intron 1 of 5) -27811 ENSMUSG00000092093.1 ENSMUSG00000092093 ENSMUST00000171026 Gm17528 pseudogene Interval_3796 chr1 63118345 63119260 + 0 NA exon (ENSMUSG00000101599.1, exon 1 of 1) lincRNA-exon (ENSMUSG00000101599.1, exon 1 of 1) 1684 ENSMUSG00000101599.1 ENSMUSG00000101599 ENSMUST00000185480 Gm20342 lincRNA Interval_145036 chr7 29572837 29573069 + 0 NA intron (ENSMUSG00000100111.2, intron 1 of 1) transcribed_unitary_pseudogene-intron (ENSMUSG00000046958.10, intron 1 of 2) 975 ENSMUSG00000100111.2 ENSMUSG00000100111 ENSMUST00000187265 A330087D11Rik lincRNA Interval_124866 chr5 57624385 57625077 + 0 NA intron (ENSMUSG00000097216.3, intron 3 of 4) processed_transcript-intron (ENSMUSG00000097216.3, intron 3 of 4) 6887 ENSMUSG00000104924.1 ENSMUSG00000104924 ENSMUST00000200310 Gm43002 TEC Interval_56301 chr14 116901503 116902264 + 0 NA Intergenic Intergenic -23648 ENSMUSG00000058571.11 ENSMUSG00000058571 ENSMUST00000078849 Gpc6 protein_coding Interval_99594 chr2 163433775 163434544 + 0 NA Intergenic Intergenic -4374 ENSMUSG00000017943.15 ENSMUSG00000017943 ENSMUST00000137070 Gdap1l1 protein_coding Interval_6071 chr1 95783275 95783723 + 0 NA Intergenic Intergenic 45303 ENSMUSG00000102718.1 ENSMUSG00000102718 ENSMUST00000194989 Gm37761 TEC Interval_83332 chr18 84292288 84292484 + 0 NA intron (ENSMUSG00000048410.17, intron 5 of 5) protein_coding-intron (ENSMUSG00000048410.17, intron 2 of 2) 83760 ENSMUSG00000102951.1 ENSMUSG00000102951 ENSMUST00000193817 Gm37216 TEC Interval_37089 chr12 57684714 57685635 + 0 NA intron (ENSMUSG00000046782.14, intron 14 of 30) protein_coding-intron (ENSMUSG00000046782.14, intron 14 of 30) 13888 ENSMUSG00000111886.1 ENSMUSG00000111886 ENSMUST00000217711 Gm47617 processed_pseudogene Interval_52165 chr14 37650704 37650891 + 0 NA Intergenic Intergenic -44009 ENSMUSG00000114334.1 ENSMUSG00000114334 ENSMUST00000224767 Gm31393 lincRNA Interval_83659 chr19 3537004 3538076 + 0 NA intron (ENSMUSG00000024908.15, intron 2 of 3) protein_coding-intron (ENSMUSG00000024908.15, intron 2 of 22) 10436 ENSMUSG00000114302.1 ENSMUSG00000114302 ENSMUST00000223977 Gm48683 antisense Interval_23300 chr11 21257895 21259392 + 0 NA intron (ENSMUSG00000020128.15, intron 1 of 22) protein_coding-intron (ENSMUSG00000020128.15, intron 1 of 22) -9083 ENSMUSG00000089155.1 ENSMUSG00000089155 ENSMUST00000158530 Gm23582 snoRNA Interval_146538 chr7 46716136 46716741 + 0 NA promoter-TSS (ENSMUSG00000040026.8) protein_coding-promoter-TSS (ENSMUSG00000040026.8) -2689 ENSMUSG00000040026.8 ENSMUSG00000040026 ENSMUST00000210913 Saa3 protein_coding Interval_55469 chr14 87636765 87637072 + 0 NA TTS (ENSMUSG00000115608.1) processed_pseudogene-TTS (ENSMUSG00000115608.1) 552 ENSMUSG00000115608.1 ENSMUSG00000115608 ENSMUST00000228615 Gm48922 processed_pseudogene Interval_84994 chr19 21052990 21053204 + 0 NA Intergenic Intergenic -51613 ENSMUSG00000118047.1 ENSMUSG00000118047 ENSMUST00000237768 4930554I06Rik lincRNA Interval_41929 chr13 4658266 4659049 + 0 NA intron (ENSMUSG00000113717.1, intron 1 of 6) lincRNA-intron (ENSMUSG00000113717.1, intron 1 of 6) 49323 ENSMUSG00000094772.2 ENSMUSG00000094772 ENSMUST00000086508 Rpl29-ps2 transcribed_processed_pseudogene Interval_68833 chr16 87463551 87464219 + 0 NA intron (ENSMUSG00000025616.14, intron 3 of 16) protein_coding-intron (ENSMUSG00000025616.14, intron 3 of 17) 8836 ENSMUSG00000025616.14 ENSMUSG00000025616 ENSMUST00000177275 Usp16 protein_coding Interval_119070 chr4 135333818 135335357 + 0 NA intron (ENSMUSG00000028809.16, intron 1 of 2) protein_coding-intron (ENSMUSG00000028809.16, intron 9 of 16) -2354 ENSMUSG00000028809.16 ENSMUSG00000028809 ENSMUST00000134019 Srrm1 protein_coding Interval_70625 chr17 12461339 12461572 + 0 NA intron (ENSMUSG00000023828.3, intron 2 of 9) protein_coding-intron (ENSMUSG00000023828.3, intron 2 of 10) -5465 ENSMUSG00000117314.1 ENSMUSG00000117314 ENSMUST00000233360 C030013G03Rik antisense Interval_65941 chr16 30400343 30400848 + 0 NA intron (ENSMUSG00000022533.14, intron 2 of 4) protein_coding-intron (ENSMUSG00000022533.14, intron 2 of 4) -51993 ENSMUSG00000116960.1 ENSMUSG00000116960 ENSMUST00000231864 Gm49679 processed_pseudogene Interval_160267 chr8 107561322 107562447 + 0 NA Intergenic Intergenic 10640 ENSMUSG00000065439.1 ENSMUSG00000065439 ENSMUST00000083505 Mir140 miRNA Interval_7138 chr1 127076898 127077235 + 0 NA Intergenic Intergenic -26370 ENSMUSG00000101385.1 ENSMUSG00000101385 ENSMUST00000185860 Gm5261 processed_pseudogene Interval_7541 chr1 132113217 132114496 + 0 NA TTS (ENSMUSG00000026437.11) protein_coding-TTS (ENSMUSG00000026437.11) 2399 ENSMUSG00000026437.11 ENSMUSG00000026437 ENSMUST00000189733 Cdk18 protein_coding Interval_61041 chr15 78915802 78916423 + 0 NA intron (ENSMUSG00000116165.1, intron 1 of 1) protein_coding-intron (ENSMUSG00000116165.1, intron 1 of 1) 2193 ENSMUSG00000116165.1 ENSMUSG00000116165 ENSMUST00000089378 Pdxp protein_coding Interval_892 chr1 13031451 13032289 + 0 NA Intergenic Intergenic 28081 ENSMUSG00000104518.1 ENSMUSG00000104518 ENSMUST00000191708 Gm37162 TEC Interval_107294 chr3 105515593 105515821 + 0 NA intron (ENSMUSG00000040896.16, intron 2 of 4) protein_coding-intron (ENSMUSG00000040896.16, intron 1 of 6) 12800 ENSMUSG00000105753.1 ENSMUSG00000105753 ENSMUST00000200070 Gm43847 sense_intronic Interval_150472 chr7 110946691 110946988 + 0 NA promoter-TSS (ENSMUSG00000005611.15) protein_coding-promoter-TSS (ENSMUSG00000005611.15) 35365 ENSMUSG00000005611.15 ENSMUSG00000005611 ENSMUST00000154466 Mrvi1 protein_coding Interval_53649 chr14 60586931 60587200 + 0 NA intron (ENSMUSG00000101797.1, intron 2 of 2) lincRNA-intron (ENSMUSG00000101797.1, intron 2 of 2) 9837 ENSMUSG00000114408.1 ENSMUSG00000114408 ENSMUST00000224210 Gm47810 processed_pseudogene Interval_48490 chr13 99397861 99398556 + 0 NA exon (ENSMUSG00000097828.2, exon 3 of 3) processed_transcript-exon (ENSMUSG00000097828.2, exon 3 of 3) 14456 ENSMUSG00000097828.2 ENSMUSG00000097828 ENSMUST00000225937 6430562O15Rik processed_transcript Interval_116616 chr4 116074637 116076735 + 0 NA promoter-TSS (ENSMUSG00000063882.12) protein_coding-promoter-TSS (ENSMUSG00000063882.12) 223 ENSMUSG00000028703.14 ENSMUSG00000028703 ENSMUST00000134983 Lrrc41 protein_coding Interval_144797 chr7 28325100 28326389 + 0 NA TTS (ENSMUSG00000003435.9) protein_coding-TTS (ENSMUSG00000003435.9) 10846 ENSMUSG00000109168.1 ENSMUSG00000109168 ENSMUST00000207649 Gm44709 antisense Interval_105103 chr3 81247186 81247923 + 0 NA Intergenic Intergenic 158018 ENSMUSG00000102223.1 ENSMUSG00000102223 ENSMUST00000193327 Gm37300 processed_pseudogene Interval_114684 chr4 83750339 83750617 + 0 NA intron (ENSMUSG00000052407.17, intron 22 of 25) protein_coding-intron (ENSMUSG00000052407.17, intron 22 of 25) 6801 ENSMUSG00000097942.1 ENSMUSG00000097942 ENSMUST00000182894 Gm26968 sense_intronic Interval_51692 chr14 31435249 31436373 + 0 NA exon (ENSMUSG00000021892.14, exon 1 of 9) protein_coding-exon (ENSMUSG00000021892.14, exon 1 of 9) 23414 ENSMUSG00000115283.1 ENSMUSG00000115283 ENSMUST00000227978 Gm49252 processed_pseudogene Interval_97724 chr2 143433047 143433735 + 0 NA Intergenic Intergenic 73668 ENSMUSG00000080895.1 ENSMUSG00000080895 ENSMUST00000121589 Gm11645 processed_pseudogene Interval_149414 chr7 98308775 98310016 + 0 NA exon (ENSMUSG00000030760.14, exon 1 of 11) protein_coding-exon (ENSMUSG00000030760.14, exon 1 of 11) 50792 ENSMUSG00000049580.12 ENSMUSG00000049580 ENSMUST00000206770 Tsku protein_coding Interval_53090 chr14 54400918 54401239 + 0 NA intron (ENSMUSG00000000958.10, intron 2 of 2) protein_coding-intron (ENSMUSG00000000958.10, intron 2 of 9) 9124 ENSMUSG00000000958.10 ENSMUSG00000000958 ENSMUST00000195999 Slc7a7 protein_coding Interval_146027 chr7 43282768 43283613 + 0 NA Intergenic Intergenic 30104 ENSMUSG00000012640.16 ENSMUSG00000012640 ENSMUST00000135130 Zfp715 protein_coding Interval_150080 chr7 105695054 105695633 + 0 NA exon (ENSMUSG00000030882.19, exon 22 of 44) protein_coding-exon (ENSMUSG00000030882.19, exon 22 of 44) -4776 ENSMUSG00000081911.1 ENSMUSG00000081911 ENSMUST00000118658 Mrps36-ps2 processed_pseudogene Interval_24883 chr11 40733123 40734552 + 0 NA promoter-TSS (ENSMUSG00000020330.16) protein_coding-promoter-TSS (ENSMUSG00000020330.16) -421 ENSMUSG00000020330.16 ENSMUSG00000020330 ENSMUST00000152749 Hmmr protein_coding Interval_104886 chr3 78320452 78320669 + 0 NA Intergenic Intergenic 85378 ENSMUSG00000104782.1 ENSMUSG00000104782 ENSMUST00000198459 Gm43326 TEC Interval_66848 chr16 38114165 38115402 + 0 NA intron (ENSMUSG00000022812.14, intron 1 of 11) protein_coding-intron (ENSMUSG00000022812.14, intron 1 of 10) -43225 ENSMUSG00000095395.2 ENSMUSG00000095395 ENSMUST00000179548 Gm25617 snoRNA Interval_17091 chr10 71306277 71306615 + 0 NA Intergenic Intergenic -4299 ENSMUSG00000093732.1 ENSMUSG00000093732 ENSMUST00000177104 Gm20609 lincRNA Interval_92802 chr2 65546019 65547680 + 0 NA intron (ENSMUSG00000057182.15, intron 1 of 15) protein_coding-intron (ENSMUSG00000057182.15, intron 1 of 26) -22191 ENSMUSG00000057182.15 ENSMUSG00000057182 ENSMUST00000126837 Scn3a protein_coding Interval_115901 chr4 106118824 106119034 + 0 NA TTS (ENSMUSG00000087933.1) snoRNA-TTS (ENSMUSG00000087933.1) 151 ENSMUSG00000087933.1 ENSMUSG00000087933 ENSMUST00000157308 Gm26047 snoRNA Interval_25919 chr11 52579468 52580558 + 0 NA Intergenic Intergenic -92703 ENSMUSG00000083129.1 ENSMUSG00000083129 ENSMUST00000118245 Gm12210 processed_pseudogene Interval_22414 chr11 9821264 9821769 + 0 NA Intergenic Intergenic -83895 ENSMUSG00000081629.1 ENSMUSG00000081629 ENSMUST00000117907 Eif3s6-ps1 processed_pseudogene Interval_170148 chr9 105553768 105554724 + 0 NA Intergenic Intergenic 6515 ENSMUSG00000101597.2 ENSMUSG00000101597 ENSMUST00000187303 Gm5621 processed_pseudogene Interval_61150 chr15 79504720 79506395 + 0 NA promoter-TSS (ENSMUSG00000044216.7) protein_coding-promoter-TSS (ENSMUSG00000044216.7) -316 ENSMUSG00000044216.7 ENSMUSG00000044216 ENSMUST00000057801 Kcnj4 protein_coding Interval_69141 chr16 90902504 90903975 + 0 NA intron (ENSMUSG00000039903.18, intron 9 of 9) protein_coding-intron (ENSMUSG00000039903.18, intron 7 of 7) -11941 ENSMUSG00000083226.2 ENSMUSG00000083226 ENSMUST00000117990 Gm7831 processed_pseudogene Interval_174343 chrX 145833123 145834014 + 0 NA exon (ENSMUSG00000080915.1, exon 1 of 1) processed_pseudogene-exon (ENSMUSG00000080915.1, exon 1 of 1) 251 ENSMUSG00000080915.1 ENSMUSG00000080915 ENSMUST00000120604 Gm6446 processed_pseudogene Interval_4604 chr1 75398593 75399512 + 0 NA intron (ENSMUSG00000026207.16, intron 4 of 38) protein_coding-intron (ENSMUSG00000026207.16, intron 6 of 40) -2689 ENSMUSG00000086053.1 ENSMUSG00000086053 ENSMUST00000132100 Gm15178 antisense Interval_43791 chr13 36472910 36473117 + 0 NA intron (ENSMUSG00000021420.13, intron 6 of 7) protein_coding-intron (ENSMUSG00000021420.13, intron 6 of 6) -13733 ENSMUSG00000114714.1 ENSMUSG00000114714 ENSMUST00000224213 Gm48763 TEC Interval_131595 chr5 138571800 138572273 + 0 NA Intergenic Intergenic -7324 ENSMUSG00000029526.5 ENSMUSG00000029526 ENSMUST00000198778 1700123K08Rik protein_coding Interval_113593 chr4 56893959 56894659 + 0 NA TTS (ENSMUSG00000065544.1) miRNA-TTS (ENSMUSG00000065544.1) 989 ENSMUSG00000065544.1 ENSMUSG00000065544 ENSMUST00000083610 Mir32 miRNA Interval_46720 chr13 69618746 69619185 + 0 NA intron (ENSMUSG00000021595.18, intron 5 of 17) protein_coding-intron (ENSMUSG00000021595.18, intron 5 of 17) -4064 ENSMUSG00000091133.1 ENSMUSG00000091133 ENSMUST00000168625 Gm17108 sense_overlapping Interval_164666 chr9 40438727 40439935 + 0 NA intron (ENSMUSG00000040111.17, intron 1 of 20) protein_coding-intron (ENSMUSG00000040111.17, intron 1 of 19) -48389 ENSMUSG00000111515.1 ENSMUSG00000111515 ENSMUST00000215697 Gm5055 processed_pseudogene Interval_107452 chr3 107810469 107810701 + 0 NA Intergenic Intergenic 22954 ENSMUSG00000106426.1 ENSMUSG00000106426 ENSMUST00000198171 Gm36211 lincRNA Interval_10255 chr1 167620270 167620879 + 0 NA intron (ENSMUSG00000015843.10, intron 1 of 8) protein_coding-intron (ENSMUSG00000015843.10, intron 2 of 9) 22114 ENSMUSG00000015843.10 ENSMUSG00000015843 ENSMUST00000111380 Rxrg protein_coding Interval_78417 chr18 12682640 12683286 + 0 NA intron (ENSMUSG00000024424.15, intron 1 of 13) protein_coding-intron (ENSMUSG00000024424.15, intron 1 of 13) -31848 ENSMUSG00000087950.1 ENSMUSG00000087950 ENSMUST00000157325 Mir1948 miRNA Interval_81857 chr18 65374139 65374306 + 0 NA intron (ENSMUSG00000032845.16, intron 2 of 3) protein_coding-intron (ENSMUSG00000032845.16, intron 2 of 12) -16112 ENSMUSG00000117721.1 ENSMUSG00000117721 ENSMUST00000236871 Gm50221 antisense Interval_116573 chr4 115811920 115813004 + 0 NA TTS (ENSMUSG00000028710.18) protein_coding-TTS (ENSMUSG00000028710.18) -16196 ENSMUSG00000028709.3 ENSMUSG00000028709 ENSMUST00000148409 Mob3c protein_coding Interval_157454 chr8 70483168 70483733 + 0 NA TTS (ENSMUSG00000035964.8) protein_coding-TTS (ENSMUSG00000035964.8) 3874 ENSMUSG00000035964.8 ENSMUSG00000035964 ENSMUST00000210365 Tmem59l protein_coding Interval_155567 chr8 34628176 34628410 + 0 NA intron (ENSMUSG00000109819.1, intron 1 of 4) lincRNA-intron (ENSMUSG00000109819.1, intron 1 of 4) 12023 ENSMUSG00000109819.1 ENSMUSG00000109819 ENSMUST00000211381 B930018H19Rik lincRNA Interval_172064 chr9 124479630 124481393 + 0 NA Intergenic Intergenic -3613 ENSMUSG00000093803.3 ENSMUSG00000093803 ENSMUST00000187126 Ppp2r3d protein_coding Interval_89420 chr2 20583431 20584229 + 0 NA intron (ENSMUSG00000036617.17, intron 1 of 2) protein_coding-intron (ENSMUSG00000036617.17, intron 3 of 18) 24026 ENSMUSG00000098575.1 ENSMUSG00000098575 ENSMUST00000183963 Gm27446 misc_RNA Interval_138099 chr6 85159182 85160681 + 0 NA Intergenic Intergenic 7310 ENSMUSG00000068303.6 ENSMUSG00000068303 ENSMUST00000186281 Spr-ps1 transcribed_unprocessed_pseudogene Interval_69200 chr16 91297915 91298621 + 0 NA intron (ENSMUSG00000085865.2, intron 1 of 2) lincRNA-intron (ENSMUSG00000085865.2, intron 2 of 3) 28496 ENSMUSG00000046160.6 ENSMUSG00000046160 ENSMUST00000056882 Olig1 protein_coding Interval_6461 chr1 110396880 110397182 + 0 NA Intergenic Intergenic 14249 ENSMUSG00000100290.1 ENSMUSG00000100290 ENSMUST00000187425 Gm18552 processed_pseudogene Interval_8648 chr1 146103436 146103708 + 0 NA Intergenic Intergenic -316864 ENSMUSG00000090323.2 ENSMUSG00000090323 ENSMUST00000163646 Gm5263 processed_pseudogene Interval_31730 chr11 102503474 102505092 + 0 NA intron (ENSMUSG00000034621.14, intron 5 of 7) protein_coding-intron (ENSMUSG00000034621.14, intron 2 of 5) -11674 ENSMUSG00000082487.1 ENSMUSG00000082487 ENSMUST00000117568 Gm11628 processed_pseudogene Interval_111349 chr4 19569326 19570479 + 0 NA intron (ENSMUSG00000028228.5, intron 1 of 4) protein_coding-intron (ENSMUSG00000028228.5, intron 1 of 15) -5260 ENSMUSG00000028229.11 ENSMUSG00000028229 ENSMUST00000029888 Rmdn1 protein_coding Interval_119322 chr4 136864746 136865291 + 0 NA Intergenic Intergenic 21169 ENSMUSG00000036905.8 ENSMUSG00000036905 ENSMUST00000046384 C1qb protein_coding Interval_98121 chr2 148400527 148401293 + 0 NA Intergenic Intergenic 5566 ENSMUSG00000037014.4 ENSMUSG00000037014 ENSMUST00000109962 Sstr4 protein_coding Interval_7610 chr1 132499594 132499873 + 0 NA intron (ENSMUSG00000026439.14, intron 13 of 13) protein_coding-intron (ENSMUSG00000026439.14, intron 14 of 14) -7156 ENSMUSG00000048174.2 ENSMUSG00000048174 ENSMUST00000188789 Tmem81 protein_coding Interval_111889 chr4 32263472 32264404 + 0 NA intron (ENSMUSG00000087049.1, intron 3 of 3) protein_coding-intron (ENSMUSG00000040270.16, intron 1 of 7) 12177 ENSMUSG00000087049.1 ENSMUSG00000087049 ENSMUST00000133451 Bach2it1 sense_intronic Interval_48504 chr13 99505159 99507602 + 0 NA TTS (ENSMUSG00000052727.6) protein_coding-TTS (ENSMUSG00000052727.6) -1941 ENSMUSG00000114282.1 ENSMUSG00000114282 ENSMUST00000223710 5330431K02Rik TEC Interval_85833 chr19 32238877 32239378 + 0 NA promoter-TSS (ENSMUSG00000040451.18) protein_coding-promoter-TSS (ENSMUSG00000040451.18) -29854 ENSMUSG00000118064.1 ENSMUSG00000118064 ENSMUST00000235377 Gm50210 sense_intronic Interval_148570 chr7 82734568 82735843 + 0 NA intron (ENSMUSG00000038563.14, intron 15 of 19) protein_coding-intron (ENSMUSG00000038563.14, intron 15 of 19) 19613 ENSMUSG00000108984.1 ENSMUSG00000108984 ENSMUST00000208664 Gm44916 TEC Interval_146622 chr7 48742809 48743055 + 0 NA Intergenic Intergenic -16110 ENSMUSG00000109170.1 ENSMUSG00000109170 ENSMUST00000209052 Gm45086 lincRNA Interval_35706 chr12 28445438 28445613 + 0 NA intron (ENSMUSG00000020633.14, intron 8 of 8) protein_coding-intron (ENSMUSG00000020633.14, intron 8 of 8) -77525 ENSMUSG00000113116.1 ENSMUSG00000113116 ENSMUST00000223390 Gm47878 processed_pseudogene Interval_25492 chr11 49202445 49204310 + 0 NA promoter-TSS (ENSMUSG00000046311.13) protein_coding-promoter-TSS (ENSMUSG00000046311.13) -9311 ENSMUSG00000046311.13 ENSMUSG00000046311 ENSMUST00000061757 Zfp62 protein_coding Interval_124516 chr5 49977276 49977507 + 0 NA intron (ENSMUSG00000029090.12, intron 14 of 18) protein_coding-intron (ENSMUSG00000029090.12, intron 14 of 18) -32833 ENSMUSG00000104634.1 ENSMUSG00000104634 ENSMUST00000198627 Gm42461 TEC Interval_80719 chr18 46567671 46568124 + 0 NA intron (ENSMUSG00000033184.14, intron 3 of 3) protein_coding-intron (ENSMUSG00000033184.14, intron 3 of 3) 6636 ENSMUSG00000056130.10 ENSMUSG00000056130 ENSMUST00000149929 Ticam2 protein_coding Interval_113161 chr4 48767808 48768388 + 0 NA Intergenic Intergenic -5136 ENSMUSG00000093240.1 ENSMUSG00000093240 ENSMUST00000175499 Gm24573 rRNA Interval_113651 chr4 57263106 57263870 + 0 NA intron (ENSMUSG00000038764.14, intron 3 of 5) protein_coding-intron (ENSMUSG00000038764.14, intron 4 of 25) -36608 ENSMUSG00000085654.1 ENSMUSG00000085654 ENSMUST00000129102 Gm12536 lincRNA Interval_163065 chr9 14946799 14947047 + 0 NA Intergenic Intergenic -2540 ENSMUSG00000110766.1 ENSMUSG00000110766 ENSMUST00000217210 Gm47214 lincRNA Interval_100755 chr2 172377221 172378529 + 0 NA exon (ENSMUSG00000027498.14, exon 5 of 6) protein_coding-exon (ENSMUSG00000027498.14, exon 5 of 6) 7194 ENSMUSG00000027498.14 ENSMUSG00000027498 ENSMUST00000116375 Cstf1 protein_coding Interval_99805 chr2 165027943 165029205 + 0 NA intron (ENSMUSG00000039804.15, intron 1 of 1) protein_coding-intron (ENSMUSG00000039804.15, intron 1 of 7) 6255 ENSMUSG00000039804.15 ENSMUSG00000039804 ENSMUST00000141663 Ncoa5 protein_coding Interval_78077 chr18 7692450 7693878 + 0 NA promoter-TSS (ENSMUSG00000117542.1) processed_pseudogene-promoter-TSS (ENSMUSG00000117542.1) -438 ENSMUSG00000117542.1 ENSMUSG00000117542 ENSMUST00000234387 Gm18763 processed_pseudogene Interval_58447 chr15 34587106 34587316 + 0 NA intron (ENSMUSG00000038879.8, intron 6 of 10) protein_coding-intron (ENSMUSG00000038879.8, intron 6 of 10) -4440 ENSMUSG00000038879.8 ENSMUSG00000038879 ENSMUST00000227126 Nipal2 protein_coding Interval_19191 chr10 95398149 95399342 + 0 NA intron (ENSMUSG00000020027.18, intron 1 of 4) protein_coding-intron (ENSMUSG00000020027.18, intron 1 of 3) 16739 ENSMUSG00000020027.18 ENSMUSG00000020027 ENSMUST00000145847 Socs2 protein_coding Interval_43100 chr13 23995789 23996081 + 0 NA Intergenic Intergenic 26621 ENSMUSG00000021338.17 ENSMUSG00000021338 ENSMUST00000136517 Carmil1 protein_coding Interval_147759 chr7 73409053 73409943 + 0 NA TTS (ENSMUSG00000070509.15) protein_coding-TTS (ENSMUSG00000070509.15) 5148 ENSMUSG00000108678.1 ENSMUSG00000108678 ENSMUST00000206096 Gm44758 TEC Interval_31598 chr11 101613706 101614094 + 0 NA intron (ENSMUSG00000086617.1, intron 2 of 2) lincRNA-intron (ENSMUSG00000086617.1, intron 2 of 2) 3200 ENSMUSG00000086617.1 ENSMUSG00000086617 ENSMUST00000139424 Gm11635 lincRNA Interval_115455 chr4 99091066 99092059 + 0 NA intron (ENSMUSG00000028556.15, intron 1 of 47) protein_coding-intron (ENSMUSG00000028556.15, intron 1 of 48) 12216 ENSMUSG00000081733.1 ENSMUSG00000081733 ENSMUST00000119478 Gm12852 processed_pseudogene Interval_42680 chr13 17910000 17910972 + 0 NA intron (ENSMUSG00000008859.8, intron 1 of 4) protein_coding-intron (ENSMUSG00000008859.8, intron 1 of 4) 15631 ENSMUSG00000114177.1 ENSMUSG00000114177 ENSMUST00000221786 Gm18362 processed_pseudogene Interval_22705 chr11 13518727 13520177 + 0 NA Intergenic Intergenic 521786 ENSMUSG00000084055.1 ENSMUSG00000084055 ENSMUST00000117869 Gm12004 processed_pseudogene Interval_138912 chr6 93445305 93445862 + 0 NA Intergenic Intergenic 9974 ENSMUSG00000107848.1 ENSMUSG00000107848 ENSMUST00000203106 Gm44181 TEC Interval_41333 chr12 112905799 112906116 + 0 NA Intergenic Intergenic 4411 ENSMUSG00000002799.6 ENSMUSG00000002799 ENSMUST00000222402 Jag2 protein_coding Interval_70161 chr17 5890327 5890895 + 0 NA TTS (ENSMUSG00000002365.10) protein_coding-TTS (ENSMUSG00000002365.10) -48476 ENSMUSG00000116734.1 ENSMUSG00000116734 ENSMUST00000231634 Gm8376 processed_pseudogene Interval_41251 chr12 112161394 112161870 + 0 NA intron (ENSMUSG00000021294.7, intron 3 of 15) protein_coding-intron (ENSMUSG00000021294.7, intron 3 of 15) -17522 ENSMUSG00000021294.7 ENSMUSG00000021294 ENSMUST00000183816 Kif26a protein_coding Interval_115250 chr4 94865302 94865486 + 0 NA intron (ENSMUSG00000006386.15, intron 20 of 22) protein_coding-intron (ENSMUSG00000006386.15, intron 20 of 22) 60551 ENSMUSG00000006386.15 ENSMUSG00000006386 ENSMUST00000131958 Tek protein_coding Interval_158153 chr8 79270054 79270287 + 0 NA intron (ENSMUSG00000037022.3, intron 6 of 7) protein_coding-intron (ENSMUSG00000037022.3, intron 5 of 6) -21627 ENSMUSG00000031682.5 ENSMUSG00000031682 ENSMUST00000210889 1700011L22Rik protein_coding Interval_101865 chr3 10257971 10258879 + 0 NA intron (ENSMUSG00000027530.15, intron 1 of 4) protein_coding-intron (ENSMUSG00000027530.15, intron 2 of 5) -4200 ENSMUSG00000027530.15 ENSMUSG00000027530 ENSMUST00000119761 Fabp12 protein_coding Interval_126597 chr5 90624830 90625292 + 0 NA intron (ENSMUSG00000029370.10, intron 2 of 3) protein_coding-intron (ENSMUSG00000029370.10, intron 2 of 10) -15260 ENSMUSG00000029370.10 ENSMUSG00000029370 ENSMUST00000201436 Rassf6 protein_coding Interval_119588 chr4 138537227 138538341 + 0 NA Intergenic Intergenic 49945 ENSMUSG00000088589.1 ENSMUSG00000088589 ENSMUST00000157964 Gm22961 snRNA Interval_48079 chr13 95846438 95846756 + 0 NA intron (ENSMUSG00000021676.10, intron 1 of 6) protein_coding-intron (ENSMUSG00000021676.10, intron 1 of 35) 50523 ENSMUSG00000065866.1 ENSMUSG00000065866 ENSMUST00000083932 Gm24032 snRNA Interval_10336 chr1 169530910 169532102 + 0 NA promoter-TSS (ENSMUSG00000026683.14) protein_coding-promoter-TSS (ENSMUSG00000026683.14) -9124 ENSMUSG00000026683.14 ENSMUSG00000026683 ENSMUST00000194831 Nuf2 protein_coding Interval_61772 chr15 84023696 84024106 + 0 NA intron (ENSMUSG00000022441.17, intron 4 of 31) protein_coding-intron (ENSMUSG00000022441.17, intron 2 of 2) -6438 ENSMUSG00000081925.1 ENSMUSG00000081925 ENSMUST00000117961 Rpl31-ps22 processed_pseudogene Interval_22663 chr11 12656290 12656794 + 0 NA Intergenic Intergenic -20391 ENSMUSG00000089034.1 ENSMUSG00000089034 ENSMUST00000158409 Gm22156 snoRNA Interval_120057 chr4 141572126 141573525 + 0 NA Intergenic Intergenic 26636 ENSMUSG00000048406.5 ENSMUSG00000048406 ENSMUST00000049927 B330016D10Rik pseudogene Interval_15157 chr10 42949908 42951246 + 0 NA intron (ENSMUSG00000044770.14, intron 2 of 3) protein_coding-intron (ENSMUSG00000044770.14, intron 7 of 8) -61780 ENSMUSG00000111086.1 ENSMUSG00000111086 ENSMUST00000214070 Gm48671 lincRNA Interval_39626 chr12 91647189 91649063 + 0 NA exon (ENSMUSG00000020961.15, exon 5 of 7) protein_coding-exon (ENSMUSG00000020961.15, exon 5 of 7) -30449 ENSMUSG00000113943.1 ENSMUSG00000113943 ENSMUST00000222304 Gm47804 lincRNA Interval_18894 chr10 92809174 92809708 + 0 NA intron (ENSMUSG00000020014.17, intron 66 of 67) protein_coding-intron (ENSMUSG00000020014.17, intron 4 of 6) -85753 ENSMUSG00000111740.1 ENSMUSG00000111740 ENSMUST00000213901 Gm49783 TEC Interval_72593 chr17 30878545 30879273 + 0 NA intron (ENSMUSG00000118341.1, intron 1 of 6) processed_transcript-intron (ENSMUSG00000118341.1, intron 1 of 6) -1562 ENSMUSG00000118281.1 ENSMUSG00000118281 ENSMUST00000235757 Gm50242 lincRNA Interval_141641 chr6 131712653 131713420 + 0 NA Intergenic Intergenic -22973 ENSMUSG00000063478.2 ENSMUSG00000063478 ENSMUST00000080619 Tas2r114 protein_coding Interval_94651 chr2 93031178 93031540 + 0 NA intron (ENSMUSG00000075027.10, intron 4 of 4) antisense-intron (ENSMUSG00000075027.10, intron 4 of 5) 915 ENSMUSG00000075027.10 ENSMUSG00000075027 ENSMUST00000145926 4631405J19Rik antisense Interval_102574 chr3 27932353 27932607 + 0 NA Intergenic Intergenic -36112 ENSMUSG00000043164.3 ENSMUSG00000043164 ENSMUST00000058077 Tmem212 protein_coding Interval_138107 chr6 85231532 85232397 + 0 NA intron (ENSMUSG00000033720.12, intron 12 of 13) protein_coding-intron (ENSMUSG00000033720.12, intron 12 of 13) 38445 ENSMUSG00000033726.8 ENSMUSG00000033726 ENSMUST00000173919 Emx1 protein_coding Interval_159286 chr8 92784063 92784317 + 0 NA Intergenic Intergenic -55994 ENSMUSG00000031740.8 ENSMUSG00000031740 ENSMUST00000211567 Mmp2 protein_coding Interval_99136 chr2 157420241 157420992 + 0 NA intron (ENSMUSG00000027646.15, intron 1 of 13) protein_coding-intron (ENSMUSG00000027646.15, intron 1 of 13) -3500 ENSMUSG00000027646.15 ENSMUSG00000027646 ENSMUST00000109529 Src protein_coding Interval_58378 chr15 34015931 34017013 + 0 NA Intergenic Intergenic 3820 ENSMUSG00000115605.1 ENSMUSG00000115605 ENSMUST00000228920 Gm9643 processed_pseudogene Interval_72582 chr17 30825794 30826418 + 0 NA intron (ENSMUSG00000033826.10, intron 83 of 90) protein_coding-intron (ENSMUSG00000033826.10, intron 85 of 92) 31330 ENSMUSG00000117760.1 ENSMUSG00000117760 ENSMUST00000237260 Gm41561 antisense Interval_12801 chr10 5599893 5600373 + 0 NA intron (ENSMUSG00000046916.9, intron 1 of 1) protein_coding-intron (ENSMUSG00000046916.9, intron 1 of 1) 6358 ENSMUSG00000046916.9 ENSMUSG00000046916 ENSMUST00000051809 Myct1 protein_coding Interval_56272 chr14 115600428 115600862 + 0 NA intron (ENSMUSG00000022112.14, intron 6 of 7) protein_coding-intron (ENSMUSG00000022112.14, intron 6 of 7) -44123 ENSMUSG00000093589.1 ENSMUSG00000093589 ENSMUST00000176139 Gm18367 processed_pseudogene Interval_98790 chr2 154986800 154987154 + 0 NA intron (ENSMUSG00000027596.10, intron 3 of 4) protein_coding-intron (ENSMUSG00000027596.10, intron 1 of 3) -26495 ENSMUSG00000027596.10 ENSMUSG00000027596 ENSMUST00000148300 a protein_coding Interval_62272 chr15 89373141 89374539 + 0 NA promoter-TSS (ENSMUSG00000091780.3) protein_coding-promoter-TSS (ENSMUSG00000091780.3) 6 ENSMUSG00000091780.3 ENSMUSG00000091780 ENSMUST00000228977 Sco2 protein_coding Interval_114844 chr4 86241048 86242921 + 0 NA intron (ENSMUSG00000066113.16, intron 5 of 5) protein_coding-intron (ENSMUSG00000066113.16, intron 9 of 12) -198490 ENSMUSG00000064687.1 ENSMUSG00000064687 ENSMUST00000082753 Gm25811 snRNA Interval_6154 chr1 98120190 98120608 + 0 NA Intergenic Intergenic -11057 ENSMUSG00000100182.6 ENSMUSG00000100182 ENSMUST00000186473 1810006J02Rik lincRNA Interval_40743 chr12 108087497 108087722 + 0 NA Intergenic Intergenic 75400 ENSMUSG00000056770.15 ENSMUSG00000056770 ENSMUST00000125916 Setd3 protein_coding Interval_16887 chr10 69509041 69509264 + 0 NA intron (ENSMUSG00000069601.14, intron 2 of 42) protein_coding-intron (ENSMUSG00000069601.14, intron 2 of 2) 57209 ENSMUSG00000112729.1 ENSMUSG00000112729 ENSMUST00000220152 Gm46231 processed_pseudogene Interval_16696 chr10 67076235 67076761 + 0 NA intron (ENSMUSG00000019873.8, intron 1 of 8) protein_coding-intron (ENSMUSG00000019873.8, intron 1 of 7) -39176 ENSMUSG00000019873.8 ENSMUSG00000019873 ENSMUST00000219431 Reep3 protein_coding Interval_47229 chr13 78426999 78428437 + 0 NA intron (ENSMUSG00000114639.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000114639.1, intron 1 of 2) 470 ENSMUSG00000114639.1 ENSMUSG00000114639 ENSMUST00000225497 Gm31946 lincRNA Interval_163106 chr9 15305667 15306998 + 0 NA promoter-TSS (ENSMUSG00000031939.16) protein_coding-promoter-TSS (ENSMUSG00000031939.16) -1414 ENSMUSG00000031939.16 ENSMUSG00000031939 ENSMUST00000214045 Taf1d protein_coding Interval_29111 chr11 80399074 80399525 + 0 NA intron (ENSMUSG00000017421.18, intron 10 of 10) protein_coding-intron (ENSMUSG00000017421.18, intron 10 of 10) 16020 ENSMUSG00000017421.18 ENSMUSG00000017421 ENSMUST00000123726 Zfp207 protein_coding Interval_54289 chr14 67188265 67189180 + 0 NA intron (ENSMUSG00000114697.1, intron 2 of 6) lincRNA-intron (ENSMUSG00000114697.1, intron 2 of 6) 19134 ENSMUSG00000114697.1 ENSMUSG00000114697 ENSMUST00000225163 Gm30806 lincRNA Interval_101993 chr3 14610911 14611944 + 0 NA promoter-TSS (ENSMUSG00000078784.8) protein_coding-promoter-TSS (ENSMUSG00000078784.8) -184 ENSMUSG00000078784.8 ENSMUSG00000078784 ENSMUST00000190064 Rbis protein_coding Interval_144720 chr7 27758487 27758737 + 0 NA Intergenic Intergenic -11893 ENSMUSG00000109143.1 ENSMUSG00000109143 ENSMUST00000208942 Gm10046 transcribed_unprocessed_pseudogene Interval_51859 chr14 33036699 33037091 + 0 NA intron (ENSMUSG00000051506.17, intron 43 of 61) protein_coding-intron (ENSMUSG00000051506.17, intron 40 of 58) 41630 ENSMUSG00000041673.12 ENSMUSG00000041673 ENSMUST00000123910 Lrrc18 protein_coding Interval_131584 chr5 138289987 138290218 + 0 NA intron (ENSMUSG00000036928.14, intron 5 of 33) protein_coding-intron (ENSMUSG00000036928.14, intron 5 of 33) 9558 ENSMUSG00000036928.14 ENSMUSG00000036928 ENSMUST00000159189 Stag3 protein_coding Interval_61731 chr15 83634204 83634486 + 0 NA intron (ENSMUSG00000016763.15, intron 8 of 21) protein_coding-intron (ENSMUSG00000016763.15, intron 9 of 22) -20606 ENSMUSG00000016763.15 ENSMUSG00000016763 ENSMUST00000229057 Scube1 protein_coding Interval_14079 chr10 26637315 26638588 + 0 NA Intergenic Intergenic 27204 ENSMUSG00000111882.2 ENSMUSG00000111882 ENSMUST00000218590 Gm48864 unitary_pseudogene Interval_163822 chr9 26895366 26895670 + 0 NA intron (ENSMUSG00000079644.2, intron 11 of 20) protein_coding-intron (ENSMUSG00000079644.2, intron 11 of 20) 27563 ENSMUSG00000079644.2 ENSMUSG00000079644 ENSMUST00000214461 Gm1110 protein_coding Interval_91061 chr2 34763889 34764101 + 0 NA Intergenic Intergenic -9671 ENSMUSG00000026864.13 ENSMUSG00000026864 ENSMUST00000129333 Hspa5 protein_coding Interval_168663 chr9 85658529 85659039 + 0 NA Intergenic Intergenic -19217 ENSMUSG00000111386.1 ENSMUSG00000111386 ENSMUST00000213802 Gm48842 lincRNA Interval_162944 chr9 13648859 13649087 + 0 NA intron (ENSMUSG00000031925.17, intron 2 of 4) protein_coding-intron (ENSMUSG00000031925.17, intron 1 of 3) -13487 ENSMUSG00000031925.17 ENSMUSG00000031925 ENSMUST00000177755 Maml2 protein_coding Interval_174108 chrX 135086579 135087829 + 0 NA Intergenic Intergenic 35780 ENSMUSG00000081146.1 ENSMUSG00000081146 ENSMUST00000120075 Gm6207 transcribed_unprocessed_pseudogene Interval_11842 chr1 186223388 186223756 + 0 NA exon (ENSMUSG00000103449.1, exon 4 of 4) lincRNA-exon (ENSMUSG00000103449.1, exon 4 of 4) 41315 ENSMUSG00000102790.1 ENSMUSG00000102790 ENSMUST00000193401 Gm37272 TEC Interval_91254 chr2 36622354 36622590 + 0 NA Intergenic Intergenic -17569 ENSMUSG00000059251.1 ENSMUSG00000059251 ENSMUST00000076850 Olfr345 protein_coding Interval_44588 chr13 46534819 46535792 + 0 NA intron (ENSMUSG00000021373.16, intron 2 of 11) protein_coding-intron (ENSMUSG00000021373.16, intron 3 of 12) 16621 ENSMUSG00000087913.1 ENSMUSG00000087913 ENSMUST00000157288 Gm24915 rRNA Interval_163264 chr9 20411732 20412076 + 0 NA Intergenic Intergenic -1271 ENSMUSG00000110811.1 ENSMUSG00000110811 ENSMUST00000213612 Gm48729 processed_pseudogene Interval_101261 chr2 179942371 179942667 + 0 NA intron (ENSMUSG00000039117.16, intron 1 of 14) protein_coding-intron (ENSMUSG00000039117.16, intron 1 of 14) -33474 ENSMUSG00000085704.1 ENSMUSG00000085704 ENSMUST00000150145 4921531C22Rik processed_transcript Interval_155250 chr8 28845851 28846053 + 0 NA intron (ENSMUSG00000063626.6, intron 3 of 14) protein_coding-intron (ENSMUSG00000063626.6, intron 3 of 17) 241534 ENSMUSG00000109874.1 ENSMUSG00000109874 ENSMUST00000211467 Gm9911 TEC Interval_21847 chr11 4720528 4721427 + 0 NA intron (ENSMUSG00000009076.10, intron 1 of 5) protein_coding-intron (ENSMUSG00000009076.10, intron 1 of 5) 16269 ENSMUSG00000009076.10 ENSMUSG00000009076 ENSMUST00000141970 Zmat5 protein_coding Interval_103500 chr3 45245121 45247515 + 0 NA Intergenic Intergenic 26249 ENSMUSG00000103082.1 ENSMUSG00000103082 ENSMUST00000191710 Gm38124 TEC Interval_114810 chr4 85513604 85515046 + 0 NA promoter-TSS (ENSMUSG00000066113.16) protein_coding-promoter-TSS (ENSMUSG00000066113.16) 153 ENSMUSG00000066113.16 ENSMUSG00000066113 ENSMUST00000107177 Adamtsl1 protein_coding Interval_169776 chr9 101159640 101160068 + 0 NA intron (ENSMUSG00000043154.15, intron 5 of 11) protein_coding-intron (ENSMUSG00000043154.15, intron 5 of 12) 9542 ENSMUSG00000104061.1 ENSMUSG00000104061 ENSMUST00000195293 Gm37953 TEC Interval_153761 chr8 7454618 7454984 + 0 NA Intergenic Intergenic -26473 ENSMUSG00000093992.1 ENSMUSG00000093992 ENSMUST00000093648 Gm26427 snRNA Interval_106272 chr3 95051333 95051807 + 0 NA Intergenic Intergenic -17654 ENSMUSG00000005625.15 ENSMUSG00000005625 ENSMUST00000143688 Psmd4 protein_coding Interval_49719 chr13 114235158 114235429 + 0 NA intron (ENSMUSG00000104314.1, intron 1 of 1) TEC-intron (ENSMUSG00000104314.1, intron 1 of 1) 7347 ENSMUSG00000114655.1 ENSMUSG00000114655 ENSMUST00000225060 4631422I05Rik TEC Interval_166675 chr9 61830232 61830648 + 0 NA Intergenic Intergenic -21264 ENSMUSG00000110968.1 ENSMUSG00000110968 ENSMUST00000213861 Gm19208 processed_pseudogene Interval_172412 chrX 18254226 18255041 + 0 NA TTS (ENSMUSG00000037369.17) protein_coding-TTS (ENSMUSG00000037369.17) 7115 ENSMUSG00000037369.17 ENSMUSG00000037369 ENSMUST00000155161 Kdm6a protein_coding Interval_24027 chr11 29623650 29623900 + 0 NA intron (ENSMUSG00000084850.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000084850.1, intron 1 of 2) -21162 ENSMUSG00000085893.1 ENSMUSG00000085893 ENSMUST00000146791 Gm12091 processed_pseudogene Interval_59277 chr15 50684009 50684667 + 0 NA intron (ENSMUSG00000038679.16, intron 7 of 8) protein_coding-intron (ENSMUSG00000038679.16, intron 5 of 6) 204776 ENSMUSG00000084458.1 ENSMUSG00000084458 ENSMUST00000122509 Mir1907 miRNA Interval_38502 chr12 79680751 79682115 + 0 NA intron (ENSMUSG00000059060.15, intron 8 of 10) protein_coding-intron (ENSMUSG00000059060.15, intron 8 of 10) 244061 ENSMUSG00000112765.1 ENSMUSG00000112765 ENSMUST00000219857 9430078K24Rik lincRNA Interval_133758 chr6 11677010 11677657 + 0 NA Intergenic Intergenic 230150 ENSMUSG00000029632.7 ENSMUSG00000029632 ENSMUST00000204714 Ndufa4 protein_coding Interval_137181 chr6 69334225 69334403 + 0 NA TTS (ENSMUSG00000105110.1) IG_V_pseudogene-TTS (ENSMUSG00000105110.1) 762 ENSMUSG00000105110.1 ENSMUSG00000105110 ENSMUST00000199305 Igkv12-66 IG_V_pseudogene Interval_94200 chr2 85047369 85048909 + 0 NA promoter-TSS (ENSMUSG00000033955.13) protein_coding-promoter-TSS (ENSMUSG00000033955.13) 10688 ENSMUSG00000027067.16 ENSMUSG00000027067 ENSMUST00000127069 Ssrp1 protein_coding Interval_56007 chr14 104038764 104039459 + 0 NA Intergenic Intergenic -11969 ENSMUSG00000115727.1 ENSMUSG00000115727 ENSMUST00000227414 4930432J09Rik lincRNA Interval_157354 chr8 69821309 69821602 + 0 NA promoter-TSS (ENSMUSG00000031861.16) protein_coding-promoter-TSS (ENSMUSG00000031861.16) -1129 ENSMUSG00000031861.16 ENSMUSG00000031861 ENSMUST00000238452 Lpar2 protein_coding Interval_165833 chr9 53652058 53652283 + 0 NA intron (ENSMUSG00000032030.16, intron 3 of 17) protein_coding-intron (ENSMUSG00000032030.16, intron 3 of 18) 12193 ENSMUSG00000064622.1 ENSMUSG00000064622 ENSMUST00000082688 Gm22304 snoRNA Interval_167588 chr9 70816535 70818022 + 0 NA intron (ENSMUSG00000032207.10, intron 4 of 8) protein_coding-intron (ENSMUSG00000032207.10, intron 4 of 8) -17641 ENSMUSG00000087744.1 ENSMUSG00000087744 ENSMUST00000157119 Gm25149 miRNA Interval_106532 chr3 97037283 97037519 + 0 NA intron (ENSMUSG00000057123.14, intron 1 of 1) protein_coding-intron (ENSMUSG00000057123.14, intron 1 of 1) -36630 ENSMUSG00000105385.1 ENSMUSG00000105385 ENSMUST00000200375 9230114J08Rik antisense Interval_64925 chr16 17260188 17261135 + 0 NA exon (ENSMUSG00000050240.16, exon 3 of 3) protein_coding-exon (ENSMUSG00000050240.16, exon 3 of 3) -16434 ENSMUSG00000055692.21 ENSMUSG00000055692 ENSMUST00000231334 Tmem191c protein_coding Interval_135878 chr6 48136543 48137082 + 0 NA intron (ENSMUSG00000097434.2, intron 3 of 3) lincRNA-intron (ENSMUSG00000097434.2, intron 3 of 3) 22468 ENSMUSG00000097434.2 ENSMUSG00000097434 ENSMUST00000180741 Gm16630 lincRNA Interval_112207 chr4 35695271 35695576 + 0 NA Intergenic Intergenic 149781 ENSMUSG00000045083.14 ENSMUSG00000045083 ENSMUST00000125128 Lingo2 protein_coding Interval_35426 chr12 21542843 21544022 + 0 NA intron (ENSMUSG00000109975.1, intron 1 of 3) transcribed_unprocessed_pseudogene-intron (ENSMUSG00000109975.1, intron 1 of 2) 125 ENSMUSG00000109975.1 ENSMUSG00000109975 ENSMUST00000209258 Gm19196 transcribed_unprocessed_pseudogene Interval_145839 chr7 40026823 40027093 + 0 NA Intergenic Intergenic -48725 ENSMUSG00000109083.2 ENSMUSG00000109083 ENSMUST00000208803 Gm44992 lincRNA Interval_3528 chr1 59367373 59368430 + 0 NA Intergenic Intergenic -11029 ENSMUSG00000099922.1 ENSMUSG00000099922 ENSMUST00000187523 Gm29016 lincRNA Interval_107580 chr3 108646042 108648083 + 0 NA Intergenic Intergenic -20789 ENSMUSG00000027884.16 ENSMUSG00000027884 ENSMUST00000156811 Clcc1 protein_coding Interval_99991 chr2 166279253 166281236 + 0 NA intron (ENSMUSG00000084840.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000084840.1, intron 1 of 2) 6336 ENSMUSG00000084840.1 ENSMUSG00000084840 ENSMUST00000152987 Gm11468 lincRNA Interval_173678 chrX 101840574 101840856 + 0 NA Intergenic Intergenic 16200 ENSMUSG00000082284.1 ENSMUSG00000082284 ENSMUST00000119546 H3f3a-ps1 processed_pseudogene Interval_38370 chr12 77959101 77959344 + 0 NA Intergenic Intergenic 139640 ENSMUSG00000112551.1 ENSMUSG00000112551 ENSMUST00000218309 Gm8219 processed_pseudogene Interval_3578 chr1 59697164 59699078 + 0 NA promoter-TSS (ENSMUSG00000026020.9) protein_coding-promoter-TSS (ENSMUSG00000026020.9) 5612 ENSMUSG00000077358.1 ENSMUSG00000077358 ENSMUST00000104170 Gm26293 snoRNA Interval_111109 chr4 12121566 12121852 + 0 NA Intergenic Intergenic -3581 ENSMUSG00000081593.1 ENSMUSG00000081593 ENSMUST00000117060 Gm11841 processed_pseudogene Interval_32033 chr11 104583515 104586030 + 0 NA promoter-TSS (ENSMUSG00000061086.12) protein_coding-promoter-TSS (ENSMUSG00000061086.12) 2733 ENSMUSG00000061086.12 ENSMUSG00000061086 ENSMUST00000136244 Myl4 protein_coding Interval_88331 chr2 3872155 3873075 + 0 NA intron (ENSMUSG00000085656.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000085656.1, intron 1 of 1) 17585 ENSMUSG00000085656.1 ENSMUSG00000085656 ENSMUST00000141222 Gm13180 lincRNA Interval_58214 chr15 30927749 30928170 + 0 NA intron (ENSMUSG00000022240.10, intron 16 of 21) protein_coding-intron (ENSMUSG00000022240.10, intron 17 of 22) 34919 ENSMUSG00000115012.1 ENSMUSG00000115012 ENSMUST00000228332 9630009A06Rik antisense Interval_126512 chr5 89433584 89434972 + 0 NA intron (ENSMUSG00000035540.12, intron 2 of 4) protein_coding-intron (ENSMUSG00000035540.12, intron 10 of 12) 1350 ENSMUSG00000035540.12 ENSMUSG00000035540 ENSMUST00000200534 Gc protein_coding Interval_4878 chr1 81265875 81266175 + 0 NA intron (ENSMUSG00000054976.14, intron 5 of 6) protein_coding-intron (ENSMUSG00000054976.14, intron 4 of 4) 189075 ENSMUSG00000054976.14 ENSMUSG00000054976 ENSMUST00000123285 Nyap2 protein_coding Interval_156942 chr8 62046770 62047021 + 0 NA Intergenic Intergenic 76255 ENSMUSG00000031635.14 ENSMUSG00000031635 ENSMUST00000210799 Anxa10 protein_coding Interval_73560 chr17 40462757 40462993 + 0 NA intron (ENSMUSG00000117017.1, intron 1 of 1) unprocessed_pseudogene-intron (ENSMUSG00000117017.1, intron 1 of 1) 779 ENSMUSG00000117017.1 ENSMUSG00000117017 ENSMUST00000233217 Gm49844 unprocessed_pseudogene Interval_55633 chr14 96962358 96962563 + 0 NA intron (ENSMUSG00000115601.1, intron 1 of 3) lincRNA-intron (ENSMUSG00000115601.1, intron 1 of 3) -5365 ENSMUSG00000115052.1 ENSMUSG00000115052 ENSMUST00000227292 Gm9287 processed_pseudogene Interval_66773 chr16 37507798 37508322 + 0 NA Intergenic Intergenic 31716 ENSMUSG00000022828.10 ENSMUSG00000022828 ENSMUST00000130350 Gtf2e1 protein_coding Interval_33032 chr11 113781006 113781250 + 0 NA exon (ENSMUSG00000041592.16, exon 45 of 45) protein_coding-exon (ENSMUSG00000041592.16, exon 45 of 45) 24426 ENSMUSG00000083090.1 ENSMUSG00000083090 ENSMUST00000121468 Gm11736 processed_pseudogene Interval_124827 chr5 55806149 55806377 + 0 NA Intergenic Intergenic -13376 ENSMUSG00000105678.1 ENSMUSG00000105678 ENSMUST00000195958 Gm43705 TEC Interval_83014 chr18 80398435 80398884 + 0 NA Intergenic Intergenic -35323 ENSMUSG00000059852.7 ENSMUSG00000059852 ENSMUST00000184366 Kcng2 protein_coding Interval_173419 chrX 93086509 93086696 + 0 NA Intergenic Intergenic -69552 ENSMUSG00000095110.1 ENSMUSG00000095110 ENSMUST00000088134 1700003E24Rik lincRNA Interval_169435 chr9 97275273 97275666 + 0 NA Intergenic Intergenic -13717 ENSMUSG00000104167.1 ENSMUSG00000104167 ENSMUST00000192385 A030012G06Rik TEC Interval_137384 chr6 71839921 71840652 + 0 NA intron (ENSMUSG00000052337.15, intron 1 of 13) protein_coding-intron (ENSMUSG00000052337.15, intron 1 of 14) -8576 ENSMUSG00000108466.1 ENSMUSG00000108466 ENSMUST00000206975 Gm44771 TEC Interval_49904 chr13 118053289 118054045 + 0 NA Intergenic Intergenic 6347 ENSMUSG00000114713.1 ENSMUSG00000114713 ENSMUST00000225643 Gm9633 processed_pseudogene Interval_73964 chr17 45723957 45724991 + 0 NA Intergenic Intergenic 9370 ENSMUSG00000094690.2 ENSMUSG00000094690 ENSMUST00000178179 1600014C23Rik protein_coding Interval_66253 chr16 32665442 32667000 + 0 NA exon (ENSMUSG00000075265.4, exon 2 of 3) antisense-exon (ENSMUSG00000075265.4, exon 2 of 3) 1976 ENSMUSG00000075265.4 ENSMUSG00000075265 ENSMUST00000141256 Tnk2os antisense Interval_57691 chr15 15617564 15618844 + 0 NA Intergenic Intergenic -161790 ENSMUSG00000115266.1 ENSMUSG00000115266 ENSMUST00000226912 4930557F08Rik lincRNA Interval_73662 chr17 42557506 42557866 + 0 NA intron (ENSMUSG00000043972.8, intron 6 of 6) protein_coding-intron (ENSMUSG00000043972.8, intron 6 of 6) 53709 ENSMUSG00000043972.8 ENSMUSG00000043972 ENSMUST00000068355 Opn5 protein_coding Interval_91920 chr2 51467109 51468159 + 0 NA Intergenic Intergenic 26148 ENSMUSG00000089614.1 ENSMUSG00000089614 ENSMUST00000158989 Gm23505 scaRNA Interval_64905 chr16 17110550 17111734 + 0 NA promoter-TSS (ENSMUSG00000022771.17) protein_coding-promoter-TSS (ENSMUSG00000022771.17) 94 ENSMUSG00000022771.17 ENSMUSG00000022771 ENSMUST00000231536 Ppil2 protein_coding Interval_89717 chr2 24961657 24963556 + 0 NA TTS (ENSMUSG00000026974.11) protein_coding-TTS (ENSMUSG00000026974.11) 154 ENSMUSG00000026975.10 ENSMUSG00000026975 ENSMUST00000124383 Dph7 protein_coding Interval_97221 chr2 132320392 132320643 + 0 NA Intergenic Intergenic 57276 ENSMUSG00000058793.14 ENSMUSG00000058793 ENSMUST00000138194 Cds2 protein_coding Interval_31657 chr11 102060532 102062349 + 0 NA TTS (ENSMUSG00000017314.12) protein_coding-TTS (ENSMUSG00000017314.12) 19931 ENSMUSG00000017309.11 ENSMUSG00000017309 ENSMUST00000107164 Cd300lg protein_coding Interval_138306 chr6 87066078 87066468 + 0 NA intron (ENSMUSG00000029992.14, intron 9 of 18) protein_coding-intron (ENSMUSG00000029992.14, intron 10 of 19) 23423 ENSMUSG00000029992.14 ENSMUSG00000029992 ENSMUST00000146410 Gfpt1 protein_coding Interval_84332 chr19 10169404 10170815 + 0 NA Intergenic Intergenic 6052 ENSMUSG00000117700.1 ENSMUSG00000117700 ENSMUST00000235345 Gm50359 processed_pseudogene Interval_161814 chr8 122962832 122963045 + 0 NA intron (ENSMUSG00000035569.17, intron 2 of 2) protein_coding-intron (ENSMUSG00000035569.17, intron 2 of 12) 20005 ENSMUSG00000065915.1 ENSMUSG00000065915 ENSMUST00000083981 Gm24445 snRNA Interval_4049 chr1 66838521 66838948 + 0 NA intron (ENSMUSG00000026003.5, intron 8 of 10) protein_coding-intron (ENSMUSG00000026003.5, intron 8 of 10) 10868 ENSMUSG00000082769.3 ENSMUSG00000082769 ENSMUST00000121857 Gm15793 processed_pseudogene Interval_75557 chr17 68003707 68004831 + 0 NA promoter-TSS (ENSMUSG00000024043.13) protein_coding-promoter-TSS (ENSMUSG00000024043.13) 110117 ENSMUSG00000117208.1 ENSMUSG00000117208 ENSMUST00000233735 Gm49945 lincRNA Interval_149991 chr7 104243190 104244988 + 0 NA promoter-TSS (ENSMUSG00000056144.14) protein_coding-promoter-TSS (ENSMUSG00000056144.14) -368 ENSMUSG00000056144.14 ENSMUSG00000056144 ENSMUST00000106848 Trim34a protein_coding Interval_12149 chr1 190149763 190149992 + 0 NA intron (ENSMUSG00000010175.13, intron 3 of 4) protein_coding-intron (ENSMUSG00000010175.13, intron 3 of 4) -18793 ENSMUSG00000099404.1 ENSMUSG00000099404 ENSMUST00000189880 Gm28172 antisense Interval_145688 chr7 37383013 37383343 + 0 NA intron (ENSMUSG00000043456.17, intron 3 of 3) protein_coding-intron (ENSMUSG00000043456.17, intron 3 of 3) -16548 ENSMUSG00000108507.1 ENSMUSG00000108507 ENSMUST00000206785 6720469O03Rik TEC Interval_89385 chr2 20282462 20283393 + 0 NA intron (ENSMUSG00000036617.17, intron 2 of 7) protein_coding-intron (ENSMUSG00000036617.17, intron 2 of 7) 2408 ENSMUSG00000065253.1 ENSMUSG00000065253 ENSMUST00000083319 Gm23970 snRNA Interval_90047 chr2 27513039 27513285 + 0 NA Intergenic Intergenic -1995 ENSMUSG00000026917.15 ENSMUSG00000026917 ENSMUST00000125088 Wdr5 protein_coding Interval_147183 chr7 64184106 64185978 + 0 NA promoter-TSS (ENSMUSG00000030523.18) protein_coding-promoter-TSS (ENSMUSG00000030523.18) 17482 ENSMUSG00000108645.1 ENSMUSG00000108645 ENSMUST00000206473 Gm44722 TEC Interval_48527 chr13 99837740 99838505 + 0 NA Intergenic Intergenic 62969 ENSMUSG00000021647.7 ENSMUSG00000021647 ENSMUST00000224142 Cartpt protein_coding Interval_170313 chr9 106866598 106866871 + 0 NA intron (ENSMUSG00000040325.16, intron 22 of 22) protein_coding-intron (ENSMUSG00000040325.16, intron 21 of 22) -3940 ENSMUSG00000103835.1 ENSMUSG00000103835 ENSMUST00000193626 Gm37612 sense_intronic Interval_86621 chr19 42101388 42102392 + 0 NA intron (ENSMUSG00000025178.9, intron 2 of 7) protein_coding-intron (ENSMUSG00000025178.9, intron 2 of 8) -12788 ENSMUSG00000025178.9 ENSMUSG00000025178 ENSMUST00000238085 Pi4k2a protein_coding Interval_163364 chr9 21091429 21092551 + 0 NA promoter-TSS (ENSMUSG00000010205.11) protein_coding-promoter-TSS (ENSMUSG00000010205.11) 7 ENSMUSG00000111497.1 ENSMUSG00000111497 ENSMUST00000217282 Gm38431 protein_coding Interval_139544 chr6 100897160 100897509 + 0 NA Intergenic Intergenic 25822 ENSMUSG00000108074.1 ENSMUSG00000108074 ENSMUST00000205099 4930595O18Rik TEC Interval_894 chr1 13040667 13041290 + 0 NA Intergenic Intergenic 18973 ENSMUSG00000104518.1 ENSMUSG00000104518 ENSMUST00000191708 Gm37162 TEC Interval_121800 chr5 8377167 8378095 + 0 NA Intergenic Intergenic 45038 ENSMUSG00000002297.16 ENSMUSG00000002297 ENSMUST00000198785 Dbf4 protein_coding Interval_144713 chr7 27683447 27683911 + 0 NA Intergenic Intergenic -5835 ENSMUSG00000108520.1 ENSMUSG00000108520 ENSMUST00000205388 Gm44684 processed_transcript Interval_22492 chr11 11062829 11063047 + 0 NA Intergenic Intergenic -53547 ENSMUSG00000050830.17 ENSMUSG00000050830 ENSMUST00000154155 Vwc2 protein_coding Interval_113988 chr4 62280768 62281208 + 0 NA intron (ENSMUSG00000066152.11, intron 2 of 4) protein_coding-intron (ENSMUSG00000066152.11, intron 2 of 4) 16674 ENSMUSG00000096713.1 ENSMUSG00000096713 ENSMUST00000180367 Gm23148 snRNA Interval_173279 chrX 75951034 75951679 + 0 NA Intergenic Intergenic -21129 ENSMUSG00000085598.1 ENSMUSG00000085598 ENSMUST00000156823 Gm14715 lincRNA Interval_154638 chr8 22199159 22200319 + 0 NA intron (ENSMUSG00000031479.9, intron 2 of 13) protein_coding-intron (ENSMUSG00000031479.9, intron 2 of 13) -17254 ENSMUSG00000031479.9 ENSMUSG00000031479 ENSMUST00000153949 Vps36 protein_coding Interval_90955 chr2 33696675 33697050 + 0 NA Intergenic Intergenic 22037 ENSMUSG00000085463.1 ENSMUSG00000085463 ENSMUST00000130532 9430024E24Rik lincRNA Interval_38112 chr12 75700926 75702347 + 0 NA Intergenic Intergenic -32109 ENSMUSG00000045690.8 ENSMUSG00000045690 ENSMUST00000187307 Wdr89 protein_coding Interval_92336 chr2 59042439 59044318 + 0 NA intron (ENSMUSG00000036641.9, intron 1 of 14) protein_coding-intron (ENSMUSG00000036641.9, intron 1 of 14) -83671 ENSMUSG00000082989.1 ENSMUSG00000082989 ENSMUST00000120771 Gm13557 processed_pseudogene Interval_98373 chr2 151914392 151914714 + 0 NA intron (ENSMUSG00000027460.7, intron 1 of 8) protein_coding-intron (ENSMUSG00000027460.7, intron 1 of 8) 3343 ENSMUSG00000027460.7 ENSMUSG00000027460 ENSMUST00000028955 Angpt4 protein_coding Interval_25325 chr11 46382489 46382866 + 0 NA intron (ENSMUSG00000020395.13, intron 1 of 3) protein_coding-intron (ENSMUSG00000020395.13, intron 1 of 16) 6784 ENSMUSG00000020395.13 ENSMUSG00000020395 ENSMUST00000155991 Itk protein_coding Interval_60213 chr15 68213746 68213979 + 0 NA intron (ENSMUSG00000022335.17, intron 2 of 13) protein_coding-intron (ENSMUSG00000022335.17, intron 2 of 4) 44925 ENSMUSG00000022335.17 ENSMUSG00000022335 ENSMUST00000161139 Zfat protein_coding Interval_106867 chr3 101411736 101413550 + 0 NA TTS (ENSMUSG00000105611.1) sense_intronic-TTS (ENSMUSG00000105611.1) 1104 ENSMUSG00000105611.1 ENSMUSG00000105611 ENSMUST00000198414 Gm42938 sense_intronic Interval_174127 chrX 135885344 135886509 + 0 NA promoter-TSS (ENSMUSG00000072964.14) protein_coding-promoter-TSS (ENSMUSG00000072964.14) 46892 ENSMUSG00000072966.11 ENSMUSG00000072966 ENSMUST00000138251 Gprasp2 protein_coding Interval_56874 chr14 122684253 122685311 + 0 NA intron (ENSMUSG00000041650.15, intron 12 of 23) protein_coding-intron (ENSMUSG00000041650.15, intron 12 of 23) -1534 ENSMUSG00000115264.1 ENSMUSG00000115264 ENSMUST00000226674 Gm49260 TEC Interval_164406 chr9 36784540 36784777 + 0 NA TTS (ENSMUSG00000062762.17) protein_coding-TTS (ENSMUSG00000062762.17) 12410 ENSMUSG00000062762.17 ENSMUSG00000062762 ENSMUST00000217339 Ei24 protein_coding Interval_165266 chr9 45888001 45889056 + 0 NA intron (ENSMUSG00000042790.16, intron 5 of 8) protein_coding-intron (ENSMUSG00000042790.16, intron 6 of 13) -8880 ENSMUSG00000087734.1 ENSMUSG00000087734 ENSMUST00000157109 Gm24646 snRNA Interval_4495 chr1 74563951 74564330 + 0 NA promoter-TSS (ENSMUSG00000026173.15) protein_coding-promoter-TSS (ENSMUSG00000026173.15) 3713 ENSMUSG00000026173.15 ENSMUSG00000026173 ENSMUST00000135111 Plcd4 protein_coding Interval_151287 chr7 120690274 120690890 + 0 NA intron (ENSMUSG00000046096.7, intron 2 of 3) protein_coding-intron (ENSMUSG00000046096.7, intron 1 of 2) -13888 ENSMUSG00000097343.2 ENSMUSG00000097343 ENSMUST00000207861 9030407P20Rik processed_transcript Interval_8296 chr1 136988824 136989252 + 0 NA Intergenic Intergenic 1232 ENSMUSG00000088970.1 ENSMUSG00000088970 ENSMUST00000158345 Gm23763 snRNA Interval_61470 chr15 81810378 81812144 + 0 NA promoter-TSS (ENSMUSG00000022389.15) protein_coding-promoter-TSS (ENSMUSG00000022389.15) -898 ENSMUSG00000022389.15 ENSMUSG00000022389 ENSMUST00000168632 Tef protein_coding Interval_64593 chr16 13562155 13562540 + 0 NA intron (ENSMUSG00000022685.9, intron 23 of 23) protein_coding-intron (ENSMUSG00000022685.9, intron 22 of 23) -30796 ENSMUSG00000077488.1 ENSMUSG00000077488 ENSMUST00000104300 Gm25276 snoRNA Interval_105697 chr3 88630176 88630552 + 0 NA intron (ENSMUSG00000028059.16, intron 3 of 22) protein_coding-intron (ENSMUSG00000028059.16, intron 2 of 21) -9303 ENSMUSG00000093390.1 ENSMUSG00000093390 ENSMUST00000177314 Gm20652 antisense Interval_42745 chr13 18862848 18863150 + 0 NA intron (ENSMUSG00000041236.8, intron 27 of 28) protein_coding-intron (ENSMUSG00000041236.8, intron 27 of 28) -59578 ENSMUSG00000089046.1 ENSMUSG00000089046 ENSMUST00000158421 Gm26172 snoRNA Interval_42964 chr13 21935458 21937536 + 0 NA Intergenic Intergenic -8615 ENSMUSG00000006720.16 ENSMUSG00000006720 ENSMUST00000176003 Zfp184 protein_coding Interval_127599 chr5 105698772 105701166 + 0 NA promoter-TSS (ENSMUSG00000046079.16) protein_coding-promoter-TSS (ENSMUSG00000046079.16) -31420 ENSMUSG00000046079.16 ENSMUSG00000046079 ENSMUST00000134605 Lrrc8d protein_coding Interval_124136 chr5 38597834 38599006 + 0 NA Intergenic Intergenic 23389 ENSMUSG00000086422.1 ENSMUSG00000086422 ENSMUST00000147322 4930421P07Rik processed_pseudogene Interval_132194 chr5 143269224 143270362 + 0 NA promoter-TSS (ENSMUSG00000105345.1) lincRNA-promoter-TSS (ENSMUSG00000105345.1) -282 ENSMUSG00000105345.1 ENSMUSG00000105345 ENSMUST00000199606 BC030343 lincRNA Interval_163595 chr9 22401686 22402247 + 0 NA TTS (ENSMUSG00000110873.1) processed_pseudogene-TTS (ENSMUSG00000110873.1) 380 ENSMUSG00000110873.1 ENSMUSG00000110873 ENSMUST00000213730 Gm48652 processed_pseudogene Interval_67819 chr16 57434569 57435031 + 0 NA intron (ENSMUSG00000043336.14, intron 1 of 4) protein_coding-intron (ENSMUSG00000043336.14, intron 1 of 4) 81707 ENSMUSG00000043336.14 ENSMUSG00000043336 ENSMUST00000159414 Filip1l protein_coding Interval_163346 chr9 20983305 20983700 + 0 NA Intergenic Intergenic -9524 ENSMUSG00000043895.6 ENSMUSG00000043895 ENSMUST00000214333 S1pr2 protein_coding Interval_135406 chr6 39143748 39144166 + 0 NA intron (ENSMUSG00000042599.8, intron 10 of 10) protein_coding-intron (ENSMUSG00000042599.8, intron 19 of 19) 10725 ENSMUSG00000042599.8 ENSMUSG00000042599 ENSMUST00000127036 Kdm7a protein_coding Interval_136160 chr6 51580207 51581078 + 0 NA TTS (ENSMUSG00000038301.15) protein_coding-TTS (ENSMUSG00000038301.15) 36119 ENSMUSG00000038301.15 ENSMUSG00000038301 ENSMUST00000149024 Snx10 protein_coding Interval_126960 chr5 98368810 98368991 + 0 NA intron (ENSMUSG00000057816.7, intron 2 of 6) protein_coding-intron (ENSMUSG00000057816.7, intron 2 of 5) 22506 ENSMUSG00000104545.1 ENSMUSG00000104545 ENSMUST00000198813 E030032P16Rik TEC Interval_157844 chr8 74892730 74893070 + 0 NA exon (ENSMUSG00000031621.9, exon 4 of 4) protein_coding-exon (ENSMUSG00000031621.9, exon 4 of 4) 19360 ENSMUSG00000031621.9 ENSMUSG00000031621 ENSMUST00000174427 Isx protein_coding Interval_87837 chr19 56391502 56392198 + 0 NA Intergenic Intergenic -11985 ENSMUSG00000049134.15 ENSMUSG00000049134 ENSMUST00000166203 Nrap protein_coding Interval_173935 chrX 113250123 113250620 + 0 NA Intergenic Intergenic -23051 ENSMUSG00000081831.1 ENSMUSG00000081831 ENSMUST00000121476 Gm7405 processed_pseudogene Interval_75334 chr17 65916094 65916656 + 0 NA TTS (ENSMUSG00000117229.1) lincRNA-TTS (ENSMUSG00000117229.1) 2788 ENSMUSG00000117229.1 ENSMUSG00000117229 ENSMUST00000233760 Gm35550 lincRNA Interval_66404 chr16 33680916 33681438 + 0 NA Intergenic Intergenic -3193 ENSMUSG00000075254.12 ENSMUSG00000075254 ENSMUST00000146518 Heg1 protein_coding Interval_9513 chr1 158267125 158268040 + 0 NA exon (ENSMUSG00000004031.13, exon 4 of 8) protein_coding-exon (ENSMUSG00000004031.13, exon 4 of 8) 88647 ENSMUSG00000004031.13 ENSMUSG00000004031 ENSMUST00000192709 Brinp2 protein_coding Interval_173198 chrX 74022994 74024348 + 0 NA promoter-TSS (ENSMUSG00000031392.18) protein_coding-promoter-TSS (ENSMUSG00000031392.18) -73 ENSMUSG00000092907.1 ENSMUSG00000092907 ENSMUST00000175166 Mir5132 miRNA Interval_36614 chr12 51480934 51481156 + 0 NA Intergenic Intergenic -36281 ENSMUSG00000111959.1 ENSMUSG00000111959 ENSMUST00000220340 Gm18503 processed_pseudogene Interval_86741 chr19 43520460 43520873 + 0 NA intron (ENSMUSG00000025190.13, intron 1 of 2) protein_coding-intron (ENSMUSG00000025190.13, intron 1 of 8) -4801 ENSMUSG00000025190.13 ENSMUSG00000025190 ENSMUST00000124954 Got1 protein_coding Interval_145969 chr7 42737403 42739473 + 0 NA Intergenic Intergenic 4029 ENSMUSG00000092554.1 ENSMUSG00000092554 ENSMUST00000172625 Gm18128 processed_pseudogene Interval_39000 chr12 84382343 84383068 + 0 NA intron (ENSMUSG00000021236.16, intron 2 of 3) protein_coding-intron (ENSMUSG00000021236.16, intron 11 of 14) 11703 ENSMUSG00000021235.13 ENSMUSG00000021235 ENSMUST00000156592 Coq6 protein_coding Interval_96762 chr2 127838671 127840125 + 0 NA intron (ENSMUSG00000027380.10, intron 1 of 5) protein_coding-intron (ENSMUSG00000027380.10, intron 1 of 5) 522 ENSMUSG00000027380.10 ENSMUSG00000027380 ENSMUST00000110344 Acoxl protein_coding Interval_91172 chr2 35649583 35649957 + 0 NA intron (ENSMUSG00000026883.17, intron 2 of 15) protein_coding-intron (ENSMUSG00000026883.17, intron 2 of 15) -60557 ENSMUSG00000026883.17 ENSMUSG00000026883 ENSMUST00000156669 Dab2ip protein_coding Interval_168219 chr9 78013521 78014321 + 0 NA TTS (ENSMUSG00000077730.1) snoRNA-TTS (ENSMUSG00000077730.1) 177 ENSMUSG00000077730.1 ENSMUSG00000077730 ENSMUST00000104542 Gm23609 snoRNA Interval_127750 chr5 107330325 107331586 + 0 NA promoter-TSS (ENSMUSG00000029279.15) protein_coding-promoter-TSS (ENSMUSG00000029279.15) 28009 ENSMUSG00000088429.1 ENSMUSG00000088429 ENSMUST00000157804 Gm22557 snRNA Interval_102221 chr3 19580660 19582153 + 0 NA intron (ENSMUSG00000027606.12, intron 4 of 4) protein_coding-intron (ENSMUSG00000027606.12, intron 4 of 4) -3385 ENSMUSG00000084339.1 ENSMUSG00000084339 ENSMUST00000117181 Gm6141 processed_pseudogene Interval_136465 chr6 54705394 54705926 + 0 NA Intergenic Intergenic 12014 ENSMUSG00000108283.1 ENSMUSG00000108283 ENSMUST00000204345 Gm44008 TEC Interval_41054 chr12 110836860 110839326 + 0 NA intron (ENSMUSG00000056458.16, intron 1 of 3) protein_coding-intron (ENSMUSG00000056458.16, intron 1 of 5) 2834 ENSMUSG00000056458.16 ENSMUSG00000056458 ENSMUST00000177224 Mok protein_coding Interval_140720 chr6 120855576 120855822 + 0 NA intron (ENSMUSG00000009112.4, intron 2 of 2) protein_coding-intron (ENSMUSG00000009112.4, intron 2 of 6) 19487 ENSMUSG00000009112.4 ENSMUSG00000009112 ENSMUST00000009256 Bcl2l13 protein_coding Interval_155803 chr8 38826413 38826924 + 0 NA Intergenic Intergenic -88116 ENSMUSG00000118594.1 ENSMUSG00000118594 ENSMUST00000239372 AC163680.1 unprocessed_pseudogene Interval_41368 chr12 113113761 113115808 + 0 NA intron (ENSMUSG00000021144.14, intron 2 of 20) protein_coding-intron (ENSMUSG00000021144.14, intron 2 of 20) -16764 ENSMUSG00000021144.14 ENSMUSG00000021144 ENSMUST00000156030 Mta1 protein_coding Interval_37614 chr12 70338954 70339308 + 0 NA intron (ENSMUSG00000021071.17, intron 1 of 9) protein_coding-intron (ENSMUSG00000021071.17, intron 1 of 11) -8331 ENSMUSG00000112945.1 ENSMUSG00000112945 ENSMUST00000223521 Gm32151 bidirectional_promoter_lncRNA Interval_107656 chr3 109517518 109518018 + 0 NA intron (ENSMUSG00000033721.16, intron 10 of 16) protein_coding-intron (ENSMUSG00000033721.16, intron 10 of 26) -129756 ENSMUSG00000033721.16 ENSMUSG00000033721 ENSMUST00000148866 Vav3 protein_coding Interval_35897 chr12 31713786 31713987 + 0 NA promoter-TSS (ENSMUSG00000044067.7) protein_coding-promoter-TSS (ENSMUSG00000044067.7) 40 ENSMUSG00000044067.7 ENSMUSG00000044067 ENSMUST00000174480 Gpr22 protein_coding Interval_167844 chr9 73033385 73033825 + 0 NA exon (ENSMUSG00000079469.10, exon 1 of 1) protein_coding-exon (ENSMUSG00000079469.10, exon 1 of 1) 1152 ENSMUSG00000079469.10 ENSMUSG00000079469 ENSMUST00000185027 Pigb protein_coding Interval_152644 chr7 135657182 135657398 + 0 NA intron (ENSMUSG00000041836.10, intron 6 of 20) protein_coding-intron (ENSMUSG00000041836.10, intron 6 of 20) -5007 ENSMUSG00000097471.8 ENSMUSG00000097471 ENSMUST00000210953 5830432E09Rik antisense Interval_98280 chr2 150771723 150772988 + 0 NA TTS (ENSMUSG00000033068.16) protein_coding-TTS (ENSMUSG00000033068.16) 23274 ENSMUSG00000033068.16 ENSMUSG00000033068 ENSMUST00000139723 Entpd6 protein_coding Interval_104320 chr3 63340295 63340857 + 0 NA intron (ENSMUSG00000027820.12, intron 9 of 22) protein_coding-intron (ENSMUSG00000027820.12, intron 9 of 22) 45310 ENSMUSG00000027820.12 ENSMUSG00000027820 ENSMUST00000193805 Mme protein_coding Interval_147230 chr7 64850754 64851037 + 0 NA intron (ENSMUSG00000030518.17, intron 2 of 3) protein_coding-intron (ENSMUSG00000030518.17, intron 3 of 9) 22102 ENSMUSG00000070520.4 ENSMUSG00000070520 ENSMUST00000094331 Nsmce3 protein_coding Interval_10597 chr1 172126185 172127492 + 0 NA promoter-TSS (ENSMUSG00000003464.13) protein_coding-promoter-TSS (ENSMUSG00000003464.13) 82 ENSMUSG00000003464.13 ENSMUSG00000003464 ENSMUST00000133081 Pex19 protein_coding Interval_72338 chr17 29280170 29281055 + 0 NA intron (ENSMUSG00000052712.17, intron 2 of 7) protein_coding-intron (ENSMUSG00000052712.17, intron 2 of 8) 6458 ENSMUSG00000052712.17 ENSMUSG00000052712 ENSMUST00000150874 BC004004 protein_coding Interval_5791 chr1 91874296 91875023 + 0 NA Intergenic Intergenic -41601 ENSMUSG00000102745.1 ENSMUSG00000102745 ENSMUST00000193764 Gm37600 TEC Interval_47915 chr13 94358089 94359514 + 0 NA promoter-TSS (ENSMUSG00000021686.6) protein_coding-promoter-TSS (ENSMUSG00000021686.6) 122 ENSMUSG00000042857.3 ENSMUSG00000042857 ENSMUST00000221110 Gm9776 bidirectional_promoter_lncRNA Interval_131672 chr5 139196967 139197266 + 0 NA Intergenic Intergenic 19240 ENSMUSG00000106127.1 ENSMUSG00000106127 ENSMUST00000196947 4930520M14Rik antisense Interval_135588 chr6 41060812 41061330 + 0 NA TTS (ENSMUSG00000103586.5) lincRNA-TTS (ENSMUSG00000103586.5) -1261 ENSMUSG00000076465.2 ENSMUSG00000076465 ENSMUST00000103266 Trbv5 TR_V_gene Interval_64535 chr16 13143729 13144171 + 0 NA intron (ENSMUSG00000022545.13, intron 1 of 1) protein_coding-intron (ENSMUSG00000022545.13, intron 9 of 10) 11559 ENSMUSG00000022545.13 ENSMUSG00000022545 ENSMUST00000156393 Ercc4 protein_coding Interval_157900 chr8 75339165 75340176 + 0 NA Intergenic Intergenic -44132 ENSMUSG00000110543.1 ENSMUSG00000110543 ENSMUST00000211897 Umpk-ps processed_pseudogene Interval_126652 chr5 91737861 91738164 + 0 NA promoter-TSS (ENSMUSG00000107261.1) processed_pseudogene-promoter-TSS (ENSMUSG00000107261.1) 67 ENSMUSG00000107261.1 ENSMUSG00000107261 ENSMUST00000202320 Trmt112-ps1 processed_pseudogene Interval_161948 chr8 123982289 123983494 + 0 NA exon (ENSMUSG00000031974.8, exon 1 of 13) protein_coding-exon (ENSMUSG00000031974.8, exon 1 of 13) 231 ENSMUSG00000031974.8 ENSMUSG00000031974 ENSMUST00000075578 Abcb10 protein_coding Interval_100387 chr2 168752272 168752494 + 0 NA intron (ENSMUSG00000027547.17, intron 3 of 3) protein_coding-intron (ENSMUSG00000027547.17, intron 3 of 3) 3560 ENSMUSG00000027547.17 ENSMUSG00000027547 ENSMUST00000130640 Sall4 protein_coding Interval_77910 chr18 5380696 5380903 + 0 NA Intergenic Intergenic -10317 ENSMUSG00000117617.1 ENSMUSG00000117617 ENSMUST00000234572 Gm50065 lincRNA Interval_156012 chr8 42217285 42217482 + 0 NA Intergenic Intergenic -29528 ENSMUSG00000053038.8 ENSMUSG00000053038 ENSMUST00000065243 Gm6180 processed_pseudogene Interval_136562 chr6 55676289 55677304 + 0 NA Intergenic Intergenic 4467 ENSMUSG00000037984.9 ENSMUSG00000037984 ENSMUST00000044767 Neurod6 protein_coding Interval_7558 chr1 132206217 132207064 + 0 NA TTS (ENSMUSG00000079330.9) protein_coding-TTS (ENSMUSG00000079330.9) 8552 ENSMUSG00000065435.1 ENSMUSG00000065435 ENSMUST00000083501 Mir135b miRNA Interval_5025 chr1 84358977 84359987 + 0 NA intron (ENSMUSG00000045658.16, intron 1 of 2) protein_coding-intron (ENSMUSG00000045658.16, intron 1 of 2) 35917 ENSMUSG00000104396.1 ENSMUSG00000104396 ENSMUST00000191700 Gm37959 TEC Interval_144209 chr7 19963075 19963705 + 0 NA Intergenic Intergenic 9607 ENSMUSG00000070778.5 ENSMUSG00000070778 ENSMUST00000094754 Rpl7a-ps8 processed_pseudogene Interval_108672 chr3 129985347 129985592 + 0 NA promoter-TSS (ENSMUSG00000001052.15) protein_coding-promoter-TSS (ENSMUSG00000001052.15) 5028 ENSMUSG00000001052.15 ENSMUSG00000001052 ENSMUST00000168675 Sec24b protein_coding Interval_65725 chr16 26077487 26077679 + 0 NA intron (ENSMUSG00000038168.5, intron 1 of 14) protein_coding-intron (ENSMUSG00000038168.5, intron 1 of 14) -36315 ENSMUSG00000090203.2 ENSMUSG00000090203 ENSMUST00000159040 AU015336 sense_intronic Interval_150730 chr7 113905669 113905872 + 0 NA intron (ENSMUSG00000038156.16, intron 5 of 5) protein_coding-intron (ENSMUSG00000038156.16, intron 5 of 15) 139596 ENSMUSG00000038156.16 ENSMUSG00000038156 ENSMUST00000084696 Spon1 protein_coding Interval_56761 chr14 121899138 121900034 + 0 NA intron (ENSMUSG00000041765.6, intron 1 of 5) protein_coding-intron (ENSMUSG00000041765.6, intron 1 of 8) 16195 ENSMUSG00000050350.8 ENSMUSG00000050350 ENSMUST00000055475 Gpr18 protein_coding Interval_135455 chr6 39419727 39421136 + 0 NA promoter-TSS (ENSMUSG00000029922.15) protein_coding-promoter-TSS (ENSMUSG00000029922.15) 544 ENSMUSG00000068601.2 ENSMUSG00000068601 ENSMUST00000090237 Gm10244 antisense Interval_19938 chr10 111388254 111388615 + 0 NA Intergenic Intergenic 51310 ENSMUSG00000112246.1 ENSMUSG00000112246 ENSMUST00000219123 Gm40761 lincRNA Interval_3353 chr1 57359692 57360007 + 0 NA exon (ENSMUSG00000097519.2, exon 4 of 4) lincRNA-exon (ENSMUSG00000097519.2, exon 4 of 4) 17695 ENSMUSG00000097519.2 ENSMUSG00000097519 ENSMUST00000181949 4930558J18Rik lincRNA Interval_57149 chr15 6981022 6981346 + 0 NA Intergenic Intergenic -14853 ENSMUSG00000104334.1 ENSMUSG00000104334 ENSMUST00000192751 Gm38282 TEC Interval_89096 chr2 16270408 16270616 + 0 NA Intergenic Intergenic -247087 ENSMUSG00000103865.1 ENSMUSG00000103865 ENSMUST00000193596 Gm37416 TEC Interval_67682 chr16 55940491 55940802 + 0 NA promoter-TSS (ENSMUSG00000116653.1) processed_pseudogene-promoter-TSS (ENSMUSG00000116653.1) 65 ENSMUSG00000116653.1 ENSMUSG00000116653 ENSMUST00000231662 Gm8900 processed_pseudogene Interval_22700 chr11 13361317 13361533 + 0 NA Intergenic Intergenic 363759 ENSMUSG00000084055.1 ENSMUSG00000084055 ENSMUST00000117869 Gm12004 processed_pseudogene Interval_110682 chr4 6390949 6391898 + 0 NA intron (ENSMUSG00000028249.15, intron 6 of 6) protein_coding-intron (ENSMUSG00000028249.15, intron 6 of 8) 13405 ENSMUSG00000104347.1 ENSMUSG00000104347 ENSMUST00000193139 Gm37689 TEC Interval_15901 chr10 59089838 59090754 + 0 NA intron (ENSMUSG00000037990.18, intron 7 of 9) protein_coding-intron (ENSMUSG00000037990.18, intron 5 of 5) -105403 ENSMUSG00000088744.1 ENSMUSG00000088744 ENSMUST00000158119 Gm23223 snoRNA Interval_68576 chr16 79030638 79030936 + 0 NA intron (ENSMUSG00000022857.13, intron 12 of 26) protein_coding-intron (ENSMUSG00000022857.13, intron 13 of 27) 60310 ENSMUSG00000022857.13 ENSMUSG00000022857 ENSMUST00000060402 Tmprss15 protein_coding Interval_51449 chr14 27646837 27647115 + 0 NA intron (ENSMUSG00000040640.11, intron 2 of 3) protein_coding-intron (ENSMUSG00000040640.11, intron 1 of 15) -67401 ENSMUSG00000114653.1 ENSMUSG00000114653 ENSMUST00000224481 Gm18398 processed_pseudogene Interval_27775 chr11 69912980 69915051 + 0 NA promoter-TSS (ENSMUSG00000023170.14) protein_coding-promoter-TSS (ENSMUSG00000023170.14) -2026 ENSMUSG00000023170.14 ENSMUSG00000023170 ENSMUST00000134581 Gps2 protein_coding Interval_140473 chr6 118533324 118534264 + 0 NA intron (ENSMUSG00000007827.10, intron 16 of 33) protein_coding-intron (ENSMUSG00000007827.10, intron 16 of 33) -10559 ENSMUSG00000007827.10 ENSMUSG00000007827 ENSMUST00000188022 Ankrd26 protein_coding Interval_136856 chr6 61482219 61482708 + 0 NA intron (ENSMUSG00000039578.17, intron 3 of 3) protein_coding-intron (ENSMUSG00000039578.17, intron 4 of 9) 81856 ENSMUSG00000107757.1 ENSMUSG00000107757 ENSMUST00000204456 Gm43898 processed_pseudogene Interval_17104 chr10 71365204 71365746 + 0 NA intron (ENSMUSG00000060733.13, intron 2 of 5) protein_coding-intron (ENSMUSG00000060733.13, intron 2 of 5) 17639 ENSMUSG00000060733.13 ENSMUSG00000060733 ENSMUST00000145521 Ipmk protein_coding Interval_96108 chr2 119802849 119804389 + 0 NA TTS (ENSMUSG00000027298.17) protein_coding-TTS (ENSMUSG00000027298.17) 4292 ENSMUSG00000027298.17 ENSMUSG00000027298 ENSMUST00000137135 Tyro3 protein_coding Interval_31666 chr11 102134235 102135161 + 0 NA Intergenic Intergenic 10626 ENSMUSG00000082045.4 ENSMUSG00000082045 ENSMUST00000120901 Gm11585 processed_pseudogene Interval_171486 chr9 118711518 118711997 + 0 NA promoter-TSS (ENSMUSG00000039115.13) protein_coding-promoter-TSS (ENSMUSG00000039115.13) -121562 ENSMUSG00000110676.1 ENSMUSG00000110676 ENSMUST00000212679 Gm45897 lincRNA Interval_21220 chr10 127288677 127291354 + 0 NA promoter-TSS (ENSMUSG00000025408.15) protein_coding-promoter-TSS (ENSMUSG00000025408.15) 773 ENSMUSG00000092384.7 ENSMUSG00000092384 ENSMUST00000174167 Gm4189 processed_transcript Interval_71726 chr17 25713289 25713697 + 0 NA Intergenic Intergenic -3678 ENSMUSG00000025739.13 ENSMUSG00000025739 ENSMUST00000115108 Gng13 protein_coding Interval_103939 chr3 55181471 55182680 + 0 NA promoter-TSS (ENSMUSG00000027794.4) protein_coding-promoter-TSS (ENSMUSG00000027794.4) 47 ENSMUSG00000027794.4 ENSMUSG00000027794 ENSMUST00000029369 Sohlh2 protein_coding Interval_55777 chr14 99943471 99945049 + 0 NA promoter-TSS (ENSMUSG00000072294.5) protein_coding-promoter-TSS (ENSMUSG00000072294.5) -43869 ENSMUSG00000072294.5 ENSMUSG00000072294 ENSMUST00000226544 Klf12 protein_coding Interval_94702 chr2 93525285 93525756 + 0 NA Intergenic Intergenic 57081 ENSMUSG00000075025.10 ENSMUSG00000075025 ENSMUST00000167654 Gm10804 lincRNA Interval_152509 chr7 133675447 133677130 + 0 NA intron (ENSMUSG00000030981.9, intron 3 of 5) protein_coding-intron (ENSMUSG00000030981.9, intron 4 of 6) 3773 ENSMUSG00000030981.9 ENSMUSG00000030981 ENSMUST00000122136 Mmp21 protein_coding Interval_89117 chr2 16735016 16735803 + 0 NA intron (ENSMUSG00000026748.13, intron 8 of 8) protein_coding-intron (ENSMUSG00000026748.13, intron 13 of 13) 96713 ENSMUSG00000026748.13 ENSMUSG00000026748 ENSMUST00000126173 Plxdc2 protein_coding Interval_8013 chr1 135204543 135205790 + 0 NA Intergenic Intergenic -26829 ENSMUSG00000079139.4 ENSMUSG00000079139 ENSMUST00000110798 Gm4204 processed_pseudogene Interval_91709 chr2 48498302 48498907 + 0 NA Intergenic Intergenic -41359 ENSMUSG00000086353.1 ENSMUSG00000086353 ENSMUST00000127672 Gm13481 lincRNA Interval_104432 chr3 65585390 65587458 + 0 NA Intergenic Intergenic -27165 ENSMUSG00000082280.4 ENSMUSG00000082280 ENSMUST00000178959 Gm5847 processed_pseudogene Interval_141084 chr6 124872206 124872647 + 0 NA intron (ENSMUSG00000023274.14, intron 5 of 6) protein_coding-intron (ENSMUSG00000023274.14, intron 5 of 9) -8443 ENSMUSG00000038390.11 ENSMUSG00000038390 ENSMUST00000204253 Gpr162 protein_coding Interval_155373 chr8 32853384 32853964 + 0 NA intron (ENSMUSG00000062991.9, intron 1 of 12) protein_coding-intron (ENSMUSG00000062991.9, intron 1 of 8) 88808 ENSMUSG00000079070.10 ENSMUSG00000079070 ENSMUST00000180220 Gm3985 lincRNA Interval_87626 chr19 53806505 53808474 + 0 NA intron (ENSMUSG00000043639.15, intron 1 of 1) protein_coding-intron (ENSMUSG00000043639.15, intron 1 of 1) 17639 ENSMUSG00000089679.1 ENSMUSG00000089679 ENSMUST00000162724 Gm16299 antisense Interval_79601 chr18 33950237 33951424 + 0 NA intron (ENSMUSG00000024376.7, intron 2 of 2) protein_coding-intron (ENSMUSG00000024376.7, intron 2 of 23) 56136 ENSMUSG00000024376.7 ENSMUSG00000024376 ENSMUST00000237971 Epb41l4a protein_coding Interval_28668 chr11 77657716 77658077 + 0 NA TTS (ENSMUSG00000077442.1) snoRNA-TTS (ENSMUSG00000077442.1) 811 ENSMUSG00000077442.1 ENSMUSG00000077442 ENSMUST00000104254 Gm23132 snoRNA Interval_19201 chr10 95466748 95467517 + 0 NA Intergenic Intergenic -5908 ENSMUSG00000112261.1 ENSMUSG00000112261 ENSMUST00000219379 Gm47599 lincRNA Interval_61942 chr15 85377921 85378232 + 0 NA intron (ENSMUSG00000016541.10, intron 5 of 11) protein_coding-intron (ENSMUSG00000016541.10, intron 5 of 11) -26822 ENSMUSG00000064764.1 ENSMUSG00000064764 ENSMUST00000082830 Gm23517 snRNA Interval_169016 chr9 90206282 90207050 + 0 NA intron (ENSMUSG00000037410.13, intron 12 of 12) protein_coding-intron (ENSMUSG00000037410.13, intron 12 of 12) 14959 ENSMUSG00000081520.1 ENSMUSG00000081520 ENSMUST00000120385 Gm16200 processed_pseudogene Interval_141304 chr6 127086279 127086959 + 0 NA exon (ENSMUSG00000038028.9, exon 6 of 6) protein_coding-exon (ENSMUSG00000038028.9, exon 6 of 6) -13678 ENSMUSG00000097525.2 ENSMUSG00000097525 ENSMUST00000180653 Platr31 antisense Interval_36790 chr12 54057274 54057478 + 0 NA intron (ENSMUSG00000021010.9, intron 8 of 10) protein_coding-intron (ENSMUSG00000021010.9, intron 9 of 11) 22016 ENSMUSG00000099407.1 ENSMUSG00000099407 ENSMUST00000185390 1700060O08Rik antisense Interval_30137 chr11 89620090 89620521 + 0 NA intron (ENSMUSG00000047773.15, intron 4 of 21) protein_coding-intron (ENSMUSG00000047773.15, intron 2 of 16) 220961 ENSMUSG00000047773.15 ENSMUSG00000047773 ENSMUST00000207171 Ankfn1 protein_coding Interval_55721 chr14 99301510 99301925 + 0 NA exon (ENSMUSG00000005148.8, exon 2 of 4) protein_coding-exon (ENSMUSG00000005148.8, exon 2 of 4) 2563 ENSMUSG00000005148.8 ENSMUSG00000005148 ENSMUST00000226784 Klf5 protein_coding Interval_63946 chr16 4705418 4705897 + 0 NA intron (ENSMUSG00000004069.17, intron 10 of 10) protein_coding-intron (ENSMUSG00000004069.17, intron 10 of 11) 13447 ENSMUSG00000063445.14 ENSMUSG00000063445 ENSMUST00000125140 Nmral1 protein_coding Interval_22772 chr11 15221862 15222590 + 0 NA Intergenic Intergenic 173068 ENSMUSG00000084183.1 ENSMUSG00000084183 ENSMUST00000121361 Gm12009 processed_pseudogene Interval_135428 chr6 39328959 39329173 + 0 NA Intergenic Intergenic 48591 ENSMUSG00000029924.12 ENSMUSG00000029924 ENSMUST00000202785 Slc37a3 protein_coding Interval_82361 chr18 72715642 72715997 + 0 NA intron (ENSMUSG00000117984.1, intron 2 of 4) lincRNA-intron (ENSMUSG00000117984.1, intron 2 of 4) 9248 ENSMUSG00000117984.1 ENSMUSG00000117984 ENSMUST00000235469 Gm31819 lincRNA Interval_145899 chr7 41548464 41548915 + 0 NA intron (ENSMUSG00000090744.7, intron 1 of 3) protein_coding-intron (ENSMUSG00000090744.7, intron 1 of 3) 24973 ENSMUSG00000090744.7 ENSMUSG00000090744 ENSMUST00000171059 Gm6871 protein_coding Interval_29277 chr11 82605761 82607207 + 0 NA Intergenic Intergenic -10305 ENSMUSG00000065201.1 ENSMUSG00000065201 ENSMUST00000083267 Gm24612 snRNA Interval_9357 chr1 156565104 156566896 + 0 NA intron (ENSMUSG00000026596.13, intron 1 of 2) protein_coding-intron (ENSMUSG00000026596.13, intron 1 of 11) -17108 ENSMUSG00000104293.1 ENSMUSG00000104293 ENSMUST00000195501 Gm38043 TEC Interval_69238 chr16 91610269 91612190 + 0 NA promoter-TSS (ENSMUSG00000085337.1) antisense-promoter-TSS (ENSMUSG00000085337.1) -239 ENSMUSG00000085337.1 ENSMUSG00000085337 ENSMUST00000138207 Gm15964 antisense Interval_122849 chr5 26049456 26050389 + 0 NA Intergenic Intergenic 8659 ENSMUSG00000073117.2 ENSMUSG00000073117 ENSMUST00000095004 Gm7347 protein_coding Interval_120718 chr4 150252946 150253763 + 0 NA Intergenic Intergenic 5894 ENSMUSG00000063524.13 ENSMUSG00000063524 ENSMUST00000136310 Eno1 protein_coding Interval_148074 chr7 79061996 79062445 + 0 NA intron (ENSMUSG00000030607.7, intron 1 of 16) protein_coding-intron (ENSMUSG00000030607.7, intron 1 of 16) -8897 ENSMUSG00000097441.1 ENSMUSG00000097441 ENSMUST00000180546 Gm26633 antisense Interval_42986 chr13 22192804 22193277 + 0 NA Intergenic Intergenic -1899 ENSMUSG00000099787.3 ENSMUSG00000099787 ENSMUST00000072632 Vmn1r192 protein_coding Interval_112918 chr4 46062368 46062839 + 0 NA intron (ENSMUSG00000028328.13, intron 2 of 9) protein_coding-intron (ENSMUSG00000028328.13, intron 2 of 9) 23394 ENSMUSG00000028328.13 ENSMUSG00000028328 ENSMUST00000155730 Tmod1 protein_coding Interval_89389 chr2 20339149 20340337 + 0 NA promoter-TSS (ENSMUSG00000036617.17) protein_coding-promoter-TSS (ENSMUSG00000036617.17) -15073 ENSMUSG00000091457.1 ENSMUSG00000091457 ENSMUST00000168048 Gm17171 antisense Interval_101781 chr3 9539359 9539620 + 0 NA intron (ENSMUSG00000040209.12, intron 1 of 9) protein_coding-intron (ENSMUSG00000040209.12, intron 2 of 8) 25810 ENSMUSG00000040209.12 ENSMUSG00000040209 ENSMUST00000192832 Zfp704 protein_coding Interval_23903 chr11 28128651 28129017 + 0 NA Intergenic Intergenic 82799 ENSMUSG00000083201.1 ENSMUSG00000083201 ENSMUST00000119821 Gm12080 processed_pseudogene Interval_131702 chr5 139398286 139399157 + 0 NA intron (ENSMUSG00000053553.11, intron 2 of 3) protein_coding-intron (ENSMUSG00000053553.11, intron 2 of 4) -7744 ENSMUSG00000044092.8 ENSMUSG00000044092 ENSMUST00000164078 C130050O18Rik protein_coding Interval_70831 chr17 15181833 15182638 + 0 NA Intergenic Intergenic 30076 ENSMUSG00000116655.1 ENSMUSG00000116655 ENSMUST00000231330 Gm35455 lincRNA Interval_49833 chr13 116837117 116837611 + 0 NA exon (ENSMUSG00000114290.1, exon 1 of 4) lincRNA-exon (ENSMUSG00000114290.1, exon 1 of 4) 814 ENSMUSG00000114290.1 ENSMUSG00000114290 ENSMUST00000224552 4930435F18Rik lincRNA Interval_130392 chr5 127249838 127250085 + 0 NA intron (ENSMUSG00000034324.16, intron 1 of 8) protein_coding-intron (ENSMUSG00000034324.16, intron 1 of 8) 31633 ENSMUSG00000087104.7 ENSMUSG00000087104 ENSMUST00000154361 Tmem132cos antisense Interval_105716 chr3 88892681 88893523 + 0 NA intron (ENSMUSG00000054199.17, intron 2 of 5) protein_coding-intron (ENSMUSG00000054199.17, intron 18 of 30) 6899 ENSMUSG00000106218.1 ENSMUSG00000106218 ENSMUST00000198251 Gm43713 antisense Interval_173101 chrX 71663006 71665021 + 0 NA promoter-TSS (ENSMUSG00000056380.13) protein_coding-promoter-TSS (ENSMUSG00000056380.13) 47 ENSMUSG00000056380.13 ENSMUSG00000056380 ENSMUST00000131554 Gpr50 protein_coding Interval_15358 chr10 45075639 45076265 + 0 NA intron (ENSMUSG00000019849.11, intron 2 of 14) protein_coding-intron (ENSMUSG00000019849.11, intron 2 of 14) 8749 ENSMUSG00000019849.11 ENSMUSG00000019849 ENSMUST00000099858 Prep protein_coding Interval_44390 chr13 44578613 44579438 + 0 NA Intergenic Intergenic -10357 ENSMUSG00000113977.1 ENSMUSG00000113977 ENSMUST00000222558 Gm34276 lincRNA Interval_25003 chr11 42905576 42906253 + 0 NA Intergenic Intergenic 8419 ENSMUSG00000084627.1 ENSMUSG00000084627 ENSMUST00000122678 Gm25543 misc_RNA Interval_74166 chr17 46867835 46870055 + 0 NA Intergenic Intergenic -21739 ENSMUSG00000036430.8 ENSMUSG00000036430 ENSMUST00000040434 Tbcc protein_coding Interval_173106 chrX 71812075 71812909 + 0 NA Intergenic Intergenic -4298 ENSMUSG00000073131.12 ENSMUSG00000073131 ENSMUST00000138979 Vma21 protein_coding Interval_153655 chr8 4305605 4306016 + 0 NA intron (ENSMUSG00000040028.10, intron 2 of 5) protein_coding-intron (ENSMUSG00000040028.10, intron 2 of 5) 6809 ENSMUSG00000040028.10 ENSMUSG00000040028 ENSMUST00000208987 Elavl1 protein_coding Interval_61922 chr15 85266837 85267570 + 0 NA intron (ENSMUSG00000006369.14, intron 16 of 16) protein_coding-intron (ENSMUSG00000006369.14, intron 16 of 16) 3749 ENSMUSG00000006369.14 ENSMUSG00000006369 ENSMUST00000160798 Fbln1 protein_coding Interval_135182 chr6 37345214 37345411 + 0 NA intron (ENSMUSG00000038648.5, intron 8 of 11) protein_coding-intron (ENSMUSG00000038648.5, intron 8 of 11) -8777 ENSMUSG00000038648.5 ENSMUSG00000038648 ENSMUST00000128534 Creb3l2 protein_coding Interval_114006 chr4 62398169 62399206 + 0 NA intron (ENSMUSG00000066149.11, intron 3 of 4) protein_coding-intron (ENSMUSG00000066149.11, intron 3 of 3) 6827 ENSMUSG00000066149.11 ENSMUSG00000066149 ENSMUST00000156854 Cdc26 protein_coding Interval_10157 chr1 166160219 166161316 + 0 NA intron (ENSMUSG00000000544.14, intron 4 of 7) protein_coding-intron (ENSMUSG00000000544.14, intron 4 of 6) 30300 ENSMUSG00000000544.14 ENSMUSG00000000544 ENSMUST00000166860 Gpa33 protein_coding Interval_100589 chr2 170289743 170290157 + 0 NA Intergenic Intergenic 4915 ENSMUSG00000084013.1 ENSMUSG00000084013 ENSMUST00000118388 Gm14270 processed_pseudogene Interval_7855 chr1 134160265 134160466 + 0 NA Intergenic Intergenic -21811 ENSMUSG00000064246.10 ENSMUSG00000064246 ENSMUST00000134812 Chil1 protein_coding Interval_37541 chr12 69711300 69711585 + 0 NA intron (ENSMUSG00000020988.9, intron 4 of 9) protein_coding-intron (ENSMUSG00000020988.9, intron 4 of 9) 13331 ENSMUSG00000020988.9 ENSMUSG00000020988 ENSMUST00000223387 L2hgdh protein_coding Interval_37656 chr12 70876184 70876451 + 0 NA intron (ENSMUSG00000048285.9, intron 3 of 11) protein_coding-intron (ENSMUSG00000048285.9, intron 3 of 13) 35834 ENSMUSG00000113584.1 ENSMUSG00000113584 ENSMUST00000221434 Gm46355 lincRNA Interval_71638 chr17 25036123 25036567 + 0 NA intron (ENSMUSG00000024169.16, intron 6 of 6) protein_coding-intron (ENSMUSG00000024169.16, intron 11 of 29) 4510 ENSMUSG00000024169.16 ENSMUSG00000024169 ENSMUST00000139300 Ift140 protein_coding Interval_70939 chr17 16373934 16375173 + 0 NA Intergenic Intergenic -53453 ENSMUSG00000116614.1 ENSMUSG00000116614 ENSMUST00000231650 Gm46610 processed_pseudogene Interval_17461 chr10 77021286 77022076 + 0 NA exon (ENSMUSG00000074919.2, exon 3 of 3) lincRNA-exon (ENSMUSG00000074919.2, exon 3 of 3) 7894 ENSMUSG00000112773.1 ENSMUSG00000112773 ENSMUST00000218177 Gm3137 lincRNA Interval_58943 chr15 40260180 40260814 + 0 NA Intergenic Intergenic -74398 ENSMUSG00000092855.1 ENSMUSG00000092855 ENSMUST00000175114 Gm25958 miRNA Interval_14565 chr10 35907776 35908072 + 0 NA Intergenic Intergenic -48474 ENSMUSG00000110865.1 ENSMUSG00000110865 ENSMUST00000213320 Gm47046 processed_pseudogene Interval_112381 chr4 40942134 40942827 + 0 NA intron (ENSMUSG00000028416.13, intron 3 of 6) protein_coding-intron (ENSMUSG00000028416.13, intron 3 of 6) 5814 ENSMUSG00000028416.13 ENSMUSG00000028416 ENSMUST00000030125 Bag1 protein_coding Interval_34454 chr12 4262059 4262393 + 0 NA intron (ENSMUSG00000020647.10, intron 16 of 18) protein_coding-intron (ENSMUSG00000020647.10, intron 19 of 22) 21093 ENSMUSG00000111916.1 ENSMUSG00000111916 ENSMUST00000220337 4921501I09Rik antisense Interval_61486 chr15 81917284 81918055 + 0 NA TTS (ENSMUSG00000022476.8) protein_coding-TTS (ENSMUSG00000022476.8) 7727 ENSMUSG00000022476.8 ENSMUSG00000022476 ENSMUST00000229402 Polr3h protein_coding Interval_81674 chr18 63102379 63102717 + 0 NA intron (ENSMUSG00000041482.17, intron 16 of 50) protein_coding-intron (ENSMUSG00000041482.17, intron 16 of 53) 65924 ENSMUSG00000118039.1 ENSMUSG00000118039 ENSMUST00000237782 Gm50171 TEC Interval_34956 chr12 15449169 15449803 + 0 NA Intergenic Intergenic -33557 ENSMUSG00000113069.1 ENSMUSG00000113069 ENSMUST00000222638 Gm48541 processed_pseudogene Interval_62185 chr15 88668838 88669463 + 0 NA Intergenic Intergenic 50005 ENSMUSG00000022387.17 ENSMUSG00000022387 ENSMUST00000139515 Brd1 protein_coding Interval_79510 chr18 32552803 32553121 + 0 NA intron (ENSMUSG00000090523.2, intron 1 of 2) protein_coding-intron (ENSMUSG00000090523.2, intron 1 of 1) 7072 ENSMUSG00000090523.2 ENSMUSG00000090523 ENSMUST00000172434 Gypc protein_coding Interval_21791 chr11 4355553 4356836 + 0 NA intron (ENSMUSG00000020419.11, intron 10 of 10) protein_coding-intron (ENSMUSG00000020419.11, intron 11 of 11) -31939 ENSMUSG00000065627.1 ENSMUSG00000065627 ENSMUST00000083693 Gm24803 snRNA Interval_76857 chr17 84564426 84564974 + 0 NA intron (ENSMUSG00000040852.6, intron 7 of 9) protein_coding-intron (ENSMUSG00000040852.6, intron 7 of 29) -10850 ENSMUSG00000040852.6 ENSMUSG00000040852 ENSMUST00000235090 Plekhh2 protein_coding Interval_108456 chr3 127394001 127394322 + 0 NA promoter-TSS (ENSMUSG00000105822.1) TEC-promoter-TSS (ENSMUSG00000105822.1) -455 ENSMUSG00000105822.1 ENSMUSG00000105822 ENSMUST00000199858 Gm42969 TEC Interval_89019 chr2 14603759 14605211 + 0 NA promoter-TSS (ENSMUSG00000057914.15) protein_coding-promoter-TSS (ENSMUSG00000057914.15) 126 ENSMUSG00000075525.3 ENSMUSG00000075525 ENSMUST00000100397 Gm10849 pseudogene Interval_96566 chr2 125774775 125775884 + 0 NA intron (ENSMUSG00000035093.16, intron 2 of 17) protein_coding-intron (ENSMUSG00000035093.16, intron 2 of 17) -15015 ENSMUSG00000035093.16 ENSMUSG00000035093 ENSMUST00000136450 Secisbp2l protein_coding Interval_135223 chr6 37648448 37649044 + 0 NA Intergenic Intergenic 38449 ENSMUSG00000107035.1 ENSMUSG00000107035 ENSMUST00000201305 Ybx1-ps2 processed_pseudogene Interval_46126 chr13 61864893 61865356 + 0 NA Intergenic Intergenic -41460 ENSMUSG00000080451.1 ENSMUSG00000080451 ENSMUST00000116801 Gm24193 miRNA Interval_81271 chr18 57239594 57239872 + 0 NA intron (ENSMUSG00000024593.15, intron 5 of 23) protein_coding-intron (ENSMUSG00000024593.15, intron 5 of 24) 75407 ENSMUSG00000118230.1 ENSMUSG00000118230 ENSMUST00000235284 Gm50200 processed_pseudogene Interval_114643 chr4 83413912 83414686 + 0 NA Intergenic Intergenic -23631 ENSMUSG00000086321.1 ENSMUSG00000086321 ENSMUST00000155822 Gm11413 antisense Interval_122328 chr5 21373874 21374067 + 0 NA intron (ENSMUSG00000039899.5, intron 1 of 1) protein_coding-intron (ENSMUSG00000064280.14, intron 2 of 7) 1328 ENSMUSG00000039899.5 ENSMUSG00000039899 ENSMUST00000035799 Fgl2 protein_coding Interval_132548 chr5 146220597 146221779 + 0 NA promoter-TSS (ENSMUSG00000029634.15) protein_coding-promoter-TSS (ENSMUSG00000029634.15) -287 ENSMUSG00000029634.15 ENSMUSG00000029634 ENSMUST00000161725 Rnf6 protein_coding Interval_89745 chr2 25185563 25186579 + 0 NA Intergenic Intergenic -2732 ENSMUSG00000103217.1 ENSMUSG00000103217 ENSMUST00000195193 Gm38287 antisense Interval_116796 chr4 117333320 117333727 + 0 NA intron (ENSMUSG00000028677.19, intron 2 of 2) protein_coding-intron (ENSMUSG00000028677.19, intron 2 of 14) 37379 ENSMUSG00000085749.1 ENSMUSG00000085749 ENSMUST00000139618 Gm12843 antisense Interval_15874 chr10 58640980 58641304 + 0 NA intron (ENSMUSG00000003227.4, intron 1 of 11) protein_coding-intron (ENSMUSG00000003227.4, intron 1 of 11) 34512 ENSMUSG00000003227.4 ENSMUSG00000003227 ENSMUST00000003312 Edar protein_coding Interval_139852 chr6 111421539 111421984 + 0 NA intron (ENSMUSG00000056755.13, intron 9 of 9) protein_coding-intron (ENSMUSG00000056755.13, intron 8 of 10) -73983 ENSMUSG00000056755.13 ENSMUSG00000056755 ENSMUST00000174310 Grm7 protein_coding Interval_167263 chr9 66855827 66856163 + 0 NA intron (ENSMUSG00000036943.9, intron 3 of 7) protein_coding-intron (ENSMUSG00000036943.9, intron 3 of 7) -21269 ENSMUSG00000053040.13 ENSMUSG00000053040 ENSMUST00000057261 Aph1c protein_coding Interval_115202 chr4 94424854 94425073 + 0 NA intron (ENSMUSG00000085931.1, intron 1 of 5) lincRNA-intron (ENSMUSG00000085931.1, intron 1 of 5) 625 ENSMUSG00000085931.1 ENSMUSG00000085931 ENSMUST00000126270 Gm12648 lincRNA Interval_134955 chr6 34102004 34102835 + 0 NA exon (ENSMUSG00000056215.13, exon 16 of 16) protein_coding-exon (ENSMUSG00000056215.13, exon 16 of 16) -49510 ENSMUSG00000087356.1 ENSMUSG00000087356 ENSMUST00000126498 Gm13856 antisense Interval_153578 chr8 3499929 3501002 + 0 NA promoter-TSS (ENSMUSG00000004567.16) protein_coding-promoter-TSS (ENSMUSG00000004567.16) 5456 ENSMUSG00000047264.8 ENSMUSG00000047264 ENSMUST00000208423 Zfp358 protein_coding Interval_166611 chr9 61312631 61313085 + 0 NA Intergenic Intergenic -19049 ENSMUSG00000111658.1 ENSMUSG00000111658 ENSMUST00000213377 B930092H01Rik lincRNA Interval_77549 chr17 91385612 91386138 + 0 NA Intergenic Intergenic -38303 ENSMUSG00000117471.1 ENSMUSG00000117471 ENSMUST00000233999 Gm49988 processed_pseudogene Interval_164502 chr9 37504313 37504569 + 0 NA intron (ENSMUSG00000042138.9, intron 2 of 2) protein_coding-intron (ENSMUSG00000042138.9, intron 1 of 3) 6672 ENSMUSG00000110993.1 ENSMUSG00000110993 ENSMUST00000214783 Gm47963 TEC Interval_114362 chr4 74277698 74278307 + 0 NA intron (ENSMUSG00000028397.13, intron 2 of 7) protein_coding-intron (ENSMUSG00000028397.13, intron 3 of 21) 15193 ENSMUSG00000028397.13 ENSMUSG00000028397 ENSMUST00000150439 Kdm4c protein_coding Interval_169357 chr9 96685666 96686173 + 0 NA TTS (ENSMUSG00000040433.16) protein_coding-TTS (ENSMUSG00000040433.16) -19909 ENSMUSG00000102097.1 ENSMUSG00000102097 ENSMUST00000186821 A930006L05Rik antisense Interval_115970 chr4 106678492 106679977 + 0 NA promoter-TSS (ENSMUSG00000025413.13) protein_coding-promoter-TSS (ENSMUSG00000025413.13) -548 ENSMUSG00000025413.13 ENSMUSG00000025413 ENSMUST00000132572 Ttc4 protein_coding Interval_120165 chr4 143140651 143141750 + 0 NA intron (ENSMUSG00000057637.13, intron 7 of 9) protein_coding-intron (ENSMUSG00000057637.13, intron 7 of 9) -5038 ENSMUSG00000106597.1 ENSMUSG00000106597 ENSMUST00000197026 Mir7021 miRNA Interval_67808 chr16 57340678 57340936 + 0 NA TTS (ENSMUSG00000116789.1) antisense-TTS (ENSMUSG00000116789.1) 2497 ENSMUSG00000116789.1 ENSMUSG00000116789 ENSMUST00000232099 Gm49579 antisense Interval_126841 chr5 94183385 94183773 + 0 NA Intergenic Intergenic -34426 ENSMUSG00000096259.2 ENSMUSG00000096259 ENSMUST00000179743 Gm3106 protein_coding Interval_39545 chr12 89844530 89845531 + 0 NA intron (ENSMUSG00000066392.12, intron 1 of 5) protein_coding-intron (ENSMUSG00000066392.12, intron 14 of 19) 32622 ENSMUSG00000066392.12 ENSMUSG00000066392 ENSMUST00000110130 Nrxn3 protein_coding Interval_109497 chr3 142948532 142949047 + 0 NA Intergenic Intergenic -13822 ENSMUSG00000078162.6 ENSMUSG00000078162 ENSMUST00000181051 Gm2574 processed_pseudogene Interval_4831 chr1 79982740 79983140 + 0 NA Intergenic Intergenic 25360 ENSMUSG00000100397.1 ENSMUSG00000100397 ENSMUST00000190355 Gm28071 processed_pseudogene Interval_6680 chr1 118709156 118709525 + 0 NA Intergenic Intergenic 27519 ENSMUSG00000088363.1 ENSMUSG00000088363 ENSMUST00000157738 Gm23497 snRNA Interval_90378 chr2 30076785 30078580 + 0 NA promoter-TSS (ENSMUSG00000026785.14) protein_coding-promoter-TSS (ENSMUSG00000026785.14) -6971 ENSMUSG00000026785.14 ENSMUSG00000026785 ENSMUST00000156197 Pkn3 protein_coding Interval_110924 chr4 10311336 10312457 + 0 NA Intergenic Intergenic 127847 ENSMUSG00000084215.3 ENSMUSG00000084215 ENSMUST00000119515 Gm11814 processed_pseudogene Interval_115060 chr4 89127804 89129761 + 0 NA promoter-TSS (ENSMUSG00000085569.1) processed_transcript-promoter-TSS (ENSMUSG00000085569.1) -556 ENSMUSG00000085569.1 ENSMUSG00000085569 ENSMUST00000138655 Gm12602 processed_transcript Interval_121808 chr5 8414302 8414534 + 0 NA intron (ENSMUSG00000002297.16, intron 2 of 11) protein_coding-intron (ENSMUSG00000002297.16, intron 2 of 11) 8251 ENSMUSG00000002297.16 ENSMUSG00000002297 ENSMUST00000198785 Dbf4 protein_coding Interval_10090 chr1 165730804 165731000 + 0 NA Intergenic Intergenic 4759 ENSMUSG00000103242.1 ENSMUSG00000103242 ENSMUST00000191813 Gm34767 processed_pseudogene Interval_12563 chr10 3182268 3182601 + 0 NA Intergenic Intergenic 6414 ENSMUSG00000111625.1 ENSMUSG00000111625 ENSMUST00000213719 Gm48097 processed_pseudogene Interval_129302 chr5 118781410 118782331 + 0 NA Intergenic Intergenic 31483 ENSMUSG00000018076.12 ENSMUSG00000018076 ENSMUST00000202787 Med13l protein_coding Interval_9289 chr1 155863105 155863296 + 0 NA TTS (ENSMUSG00000033671.18) protein_coding-TTS (ENSMUSG00000033671.18) -1760 ENSMUSG00000103771.1 ENSMUSG00000103771 ENSMUST00000192007 Gm36934 processed_pseudogene Interval_73272 chr17 35916098 35919977 + 0 NA TTS (ENSMUSG00000084751.1) miRNA-TTS (ENSMUSG00000084751.1) 148 ENSMUSG00000084751.1 ENSMUSG00000084751 ENSMUST00000122802 Mir1894 miRNA Interval_69977 chr17 3750819 3751272 + 0 NA Intergenic Intergenic -54784 ENSMUSG00000023802.4 ENSMUSG00000023802 ENSMUST00000115800 Nox3 protein_coding Interval_23457 chr11 22743696 22744357 + 0 NA Intergenic Intergenic 9988 ENSMUSG00000085803.1 ENSMUSG00000085803 ENSMUST00000148364 Gm12056 lincRNA Interval_11705 chr1 184802341 184802910 + 0 NA intron (ENSMUSG00000026621.13, intron 3 of 6) protein_coding-intron (ENSMUSG00000026621.13, intron 3 of 6) 6228 ENSMUSG00000026621.13 ENSMUSG00000026621 ENSMUST00000189492 Mtarc1 protein_coding Interval_30174 chr11 90142813 90142999 + 0 NA intron (ENSMUSG00000085074.1, intron 1 of 3) lincRNA-intron (ENSMUSG00000085074.1, intron 1 of 3) 718 ENSMUSG00000085074.1 ENSMUSG00000085074 ENSMUST00000142279 Gm11494 lincRNA Interval_101271 chr2 180010840 180011951 + 0 NA Intergenic Intergenic -16514 ENSMUSG00000039108.14 ENSMUSG00000039108 ENSMUST00000140257 Lsm14b protein_coding Interval_109032 chr3 135290264 135290943 + 0 NA intron (ENSMUSG00000028167.15, intron 2 of 7) protein_coding-intron (ENSMUSG00000028167.15, intron 4 of 9) 9320 ENSMUSG00000028167.15 ENSMUSG00000028167 ENSMUST00000154869 Bdh2 protein_coding Interval_10087 chr1 165707329 165708493 + 0 NA TTS (ENSMUSG00000040723.14) protein_coding-TTS (ENSMUSG00000040723.14) 1846 ENSMUSG00000040723.14 ENSMUSG00000040723 ENSMUST00000195045 Rcsd1 protein_coding Interval_157646 chr8 71988264 71989481 + 0 NA TTS (ENSMUSG00000003484.4) protein_coding-TTS (ENSMUSG00000003484.4) 4043 ENSMUSG00000003484.4 ENSMUSG00000003484 ENSMUST00000125448 Cyp4f18 protein_coding Interval_38734 chr12 81714257 81715573 + 0 NA Intergenic Intergenic 5137 ENSMUSG00000113184.1 ENSMUSG00000113184 ENSMUST00000221438 Gm49654 lincRNA Interval_23185 chr11 20404388 20405015 + 0 NA Intergenic Intergenic -41711 ENSMUSG00000083878.3 ENSMUSG00000083878 ENSMUST00000119032 Gm12034 processed_pseudogene Interval_118695 chr4 133227723 133228044 + 0 NA Intergenic Intergenic 14977 ENSMUSG00000028865.14 ENSMUSG00000028865 ENSMUST00000134713 Cd164l2 protein_coding Interval_42067 chr13 7227883 7228120 + 0 NA Intergenic Intergenic -63666 ENSMUSG00000113241.1 ENSMUSG00000113241 ENSMUST00000221816 Gm40663 lincRNA Interval_31079 chr11 98026428 98027521 + 0 NA promoter-TSS (ENSMUSG00000017404.12) protein_coding-promoter-TSS (ENSMUSG00000017404.12) 17 ENSMUSG00000017404.12 ENSMUSG00000017404 ENSMUST00000134435 Rpl19 protein_coding Interval_112402 chr4 41054743 41055718 + 0 NA Intergenic Intergenic 5010 ENSMUSG00000088154.1 ENSMUSG00000088154 ENSMUST00000157529 Gm25637 snRNA Interval_144765 chr7 28100492 28101264 + 0 NA promoter-TSS (ENSMUSG00000047730.17) protein_coding-promoter-TSS (ENSMUSG00000047730.17) -12949 ENSMUSG00000047730.17 ENSMUSG00000047730 ENSMUST00000131090 Fcgbp protein_coding Interval_96234 chr2 120768618 120769292 + 0 NA intron (ENSMUSG00000027284.16, intron 9 of 40) protein_coding-intron (ENSMUSG00000090100.7, intron 10 of 15) -40317 ENSMUSG00000027284.16 ENSMUSG00000027284 ENSMUST00000136725 Cdan1 protein_coding Interval_83692 chr19 3767291 3769187 + 0 NA promoter-TSS (ENSMUSG00000045098.19) protein_coding-promoter-TSS (ENSMUSG00000045098.19) 93 ENSMUSG00000045098.19 ENSMUSG00000045098 ENSMUST00000176125 Kmt5b protein_coding Interval_73859 chr17 44724990 44725183 + 0 NA intron (ENSMUSG00000039153.17, intron 1 of 3) protein_coding-intron (ENSMUSG00000039153.17, intron 2 of 7) -10759 ENSMUSG00000073394.4 ENSMUSG00000073394 ENSMUST00000097320 Runx2os1 antisense Interval_19367 chr10 98089499 98090908 + 0 NA Intergenic Intergenic -123113 ENSMUSG00000074776.4 ENSMUSG00000074776 ENSMUST00000099324 Gm10754 lincRNA Interval_99607 chr2 163506681 163506920 + 0 NA promoter-TSS (ENSMUSG00000017950.16) protein_coding-promoter-TSS (ENSMUSG00000017950.16) -8 ENSMUSG00000017950.16 ENSMUSG00000017950 ENSMUST00000137449 Hnf4a protein_coding Interval_91469 chr2 39102190 39102789 + 0 NA TTS (ENSMUSG00000035236.17) protein_coding-TTS (ENSMUSG00000035236.17) -3079 ENSMUSG00000035236.17 ENSMUSG00000035236 ENSMUST00000142872 Scai protein_coding Interval_122170 chr5 18656388 18656782 + 0 NA Intergenic Intergenic -157619 ENSMUSG00000105930.1 ENSMUSG00000105930 ENSMUST00000198410 Gm17889 processed_pseudogene Interval_77664 chr17 93830824 93831145 + 0 NA Intergenic Intergenic -149950 ENSMUSG00000117537.1 ENSMUSG00000117537 ENSMUST00000234228 Gm50003 processed_pseudogene Interval_7764 chr1 133519078 133519310 + 0 NA Intergenic Intergenic -10285 ENSMUSG00000101004.1 ENSMUSG00000101004 ENSMUST00000188004 Gm8596 processed_pseudogene Interval_157898 chr8 75318572 75319021 + 0 NA Intergenic Intergenic 24226 ENSMUSG00000110432.1 ENSMUSG00000110432 ENSMUST00000213023 Gm45907 processed_pseudogene Interval_30653 chr11 95697680 95698884 + 0 NA exon (ENSMUSG00000045075.3, exon 1 of 1) lincRNA-exon (ENSMUSG00000045075.3, exon 1 of 1) 861 ENSMUSG00000045075.3 ENSMUSG00000045075 ENSMUST00000191115 Gm9796 lincRNA Interval_64214 chr16 9240476 9240751 + 0 NA Intergenic Intergenic 81843 ENSMUSG00000116123.1 ENSMUSG00000116123 ENSMUST00000229655 Gm49451 lincRNA Interval_73693 chr17 42837109 42837863 + 0 NA intron (ENSMUSG00000061665.7, intron 2 of 15) protein_coding-intron (ENSMUSG00000061665.7, intron 4 of 17) -6456 ENSMUSG00000061665.7 ENSMUSG00000061665 ENSMUST00000233626 Cd2ap protein_coding Interval_147924 chr7 75609609 75610207 + 0 NA promoter-TSS (ENSMUSG00000066406.16) protein_coding-promoter-TSS (ENSMUSG00000066406.16) 49294 ENSMUSG00000108557.1 ENSMUSG00000108557 ENSMUST00000205544 Gm44835 TEC Interval_95290 chr2 105727830 105728323 + 0 NA intron (ENSMUSG00000027167.11, intron 9 of 9) protein_coding-intron (ENSMUSG00000027167.11, intron 9 of 9) 19077 ENSMUSG00000084870.1 ENSMUSG00000084870 ENSMUST00000123441 Gm13954 antisense Interval_149349 chr7 97631456 97631863 + 0 NA intron (ENSMUSG00000035623.14, intron 3 of 4) protein_coding-intron (ENSMUSG00000035623.14, intron 2 of 15) 13453 ENSMUSG00000086433.1 ENSMUSG00000086433 ENSMUST00000126902 Rsf1os1 antisense Interval_134435 chr6 28651989 28652352 + 0 NA intron (ENSMUSG00000001424.14, intron 2 of 4) protein_coding-intron (ENSMUSG00000001424.14, intron 11 of 23) 84098 ENSMUSG00000103132.1 ENSMUSG00000103132 ENSMUST00000194736 Gm37978 TEC Interval_160757 chr8 111973862 111974316 + 0 NA intron (ENSMUSG00000031949.17, intron 8 of 8) protein_coding-intron (ENSMUSG00000031949.17, intron 8 of 9) 18213 ENSMUSG00000031949.17 ENSMUSG00000031949 ENSMUST00000120457 Adat1 protein_coding Interval_54515 chr14 70387215 70387430 + 0 NA intron (ENSMUSG00000033644.5, intron 20 of 22) protein_coding-intron (ENSMUSG00000033644.5, intron 20 of 22) 27135 ENSMUSG00000058745.4 ENSMUSG00000058745 ENSMUST00000078149 Gm9174 processed_pseudogene Interval_75057 chr17 62684950 62685682 + 0 NA intron (ENSMUSG00000048915.12, intron 1 of 3) protein_coding-intron (ENSMUSG00000048915.12, intron 1 of 4) 195828 ENSMUSG00000048915.12 ENSMUSG00000048915 ENSMUST00000078839 Efna5 protein_coding Interval_101644 chr3 8476824 8477105 + 0 NA Intergenic Intergenic -13929 ENSMUSG00000102463.1 ENSMUSG00000102463 ENSMUST00000194834 1700003N22Rik processed_pseudogene Interval_66214 chr16 32354731 32355259 + 0 NA intron (ENSMUSG00000053774.9, intron 2 of 2) protein_coding-intron (ENSMUSG00000053774.9, intron 2 of 10) 22730 ENSMUSG00000053774.9 ENSMUSG00000053774 ENSMUST00000232137 Ubxn7 protein_coding Interval_13898 chr10 24405082 24405647 + 0 NA Intergenic Intergenic -42126 ENSMUSG00000086148.1 ENSMUSG00000086148 ENSMUST00000134627 Gm15271 lincRNA Interval_66238 chr16 32523959 32524711 + 0 NA intron (ENSMUSG00000052363.8, intron 2 of 3) protein_coding-intron (ENSMUSG00000052363.8, intron 2 of 3) -27407 ENSMUSG00000116957.1 ENSMUSG00000116957 ENSMUST00000232103 Gm34680 lincRNA Interval_40352 chr12 104201281 104202552 + 0 NA Intergenic Intergenic -8990 ENSMUSG00000091553.1 ENSMUSG00000091553 ENSMUST00000165968 Serpina3e-ps unprocessed_pseudogene Interval_145695 chr7 37474849 37476279 + 0 NA intron (ENSMUSG00000043456.17, intron 1 of 1) protein_coding-intron (ENSMUSG00000043456.17, intron 1 of 1) -8142 ENSMUSG00000108790.1 ENSMUSG00000108790 ENSMUST00000205574 Gm44806 TEC Interval_140807 chr6 121508377 121508848 + 0 NA Intergenic Intergenic -29584 ENSMUSG00000107923.1 ENSMUSG00000107923 ENSMUST00000205071 Gm43922 processed_pseudogene Interval_22977 chr11 18317044 18317360 + 0 NA Intergenic Intergenic 10469 ENSMUSG00000081302.1 ENSMUSG00000081302 ENSMUST00000119030 Gm12020 processed_pseudogene Interval_5815 chr1 92119181 92119813 + 0 NA intron (ENSMUSG00000026313.16, intron 3 of 4) protein_coding-intron (ENSMUSG00000026313.16, intron 1 of 25) 76197 ENSMUSG00000026313.16 ENSMUSG00000026313 ENSMUST00000212408 Hdac4 protein_coding Interval_57255 chr15 8168517 8169690 + 0 NA promoter-TSS (ENSMUSG00000039801.7) protein_coding-promoter-TSS (ENSMUSG00000039801.7) 18020 ENSMUSG00000022142.8 ENSMUSG00000022142 ENSMUST00000230647 Nup155 protein_coding Interval_121917 chr5 9587170 9587379 + 0 NA intron (ENSMUSG00000003974.6, intron 2 of 5) protein_coding-intron (ENSMUSG00000003974.6, intron 2 of 5) 15333 ENSMUSG00000106637.1 ENSMUSG00000106637 ENSMUST00000199761 Gm42455 TEC Interval_54402 chr14 68556946 68557926 + 0 NA Intergenic Intergenic -23695 ENSMUSG00000022056.9 ENSMUSG00000022056 ENSMUST00000225673 Adam7 protein_coding Interval_8545 chr1 141290369 141290764 + 0 NA Intergenic Intergenic -7534 ENSMUSG00000093879.1 ENSMUSG00000093879 ENSMUST00000179509 Gm25457 snRNA Interval_166012 chr9 55442002 55443406 + 0 NA Intergenic Intergenic 69416 ENSMUSG00000032314.14 ENSMUSG00000032314 ENSMUST00000142587 Etfa protein_coding Interval_36914 chr12 55315201 55315897 + 0 NA intron (ENSMUSG00000021023.14, intron 3 of 6) protein_coding-intron (ENSMUSG00000021023.14, intron 3 of 6) 15972 ENSMUSG00000021023.14 ENSMUSG00000021023 ENSMUST00000183654 Prorp protein_coding Interval_28937 chr11 79372576 79373569 + 0 NA promoter-TSS (ENSMUSG00000082304.1) processed_pseudogene-promoter-TSS (ENSMUSG00000082304.1) -842 ENSMUSG00000082304.1 ENSMUSG00000082304 ENSMUST00000119771 Gm11198 processed_pseudogene Interval_22600 chr11 12205434 12205778 + 0 NA Intergenic Intergenic -77608 ENSMUSG00000083527.1 ENSMUSG00000083527 ENSMUST00000121727 Gm12001 processed_pseudogene Interval_18273 chr10 84514018 84514572 + 0 NA Intergenic Intergenic -3750 ENSMUSG00000111514.1 ENSMUSG00000111514 ENSMUST00000215920 E230014E18Rik lincRNA Interval_89399 chr2 20444152 20446478 + 0 NA intron (ENSMUSG00000036617.17, intron 2 of 3) protein_coding-intron (ENSMUSG00000036617.17, intron 3 of 7) -12381 ENSMUSG00000085477.7 ENSMUSG00000085477 ENSMUST00000149398 Gm13335 antisense Interval_78460 chr18 12995296 12996139 + 0 NA Intergenic Intergenic -11320 ENSMUSG00000037346.5 ENSMUSG00000037346 ENSMUST00000234565 Hrh4 protein_coding Interval_81743 chr18 64331597 64333570 + 0 NA intron (ENSMUSG00000086128.8, intron 1 of 2) antisense-intron (ENSMUSG00000086128.8, intron 1 of 2) -7437 ENSMUSG00000045991.19 ENSMUSG00000045991 ENSMUST00000175965 Onecut2 protein_coding Interval_11690 chr1 184709162 184709474 + 0 NA Intergenic Intergenic -3179 ENSMUSG00000092578.1 ENSMUSG00000092578 ENSMUST00000172500 4930488B22Rik lincRNA Interval_139139 chr6 95901581 95901900 + 0 NA Intergenic Intergenic 25189 ENSMUSG00000107856.1 ENSMUSG00000107856 ENSMUST00000203221 Gm7838 processed_pseudogene Interval_47578 chr13 89423143 89424306 + 0 NA Intergenic Intergenic 154695 ENSMUSG00000094463.2 ENSMUSG00000094463 ENSMUST00000178288 Gm8546 processed_pseudogene Interval_149068 chr7 92855121 92855342 + 0 NA Intergenic Intergenic 19001 ENSMUSG00000030641.10 ENSMUSG00000030641 ENSMUST00000207931 Ddias protein_coding Interval_57388 chr15 10485506 10487531 + 0 NA promoter-TSS (ENSMUSG00000022247.12) protein_coding-promoter-TSS (ENSMUSG00000022247.12) 469 ENSMUSG00000022248.14 ENSMUSG00000022248 ENSMUST00000170100 Rad1 protein_coding Interval_161030 chr8 117046923 117047651 + 0 NA intron (ENSMUSG00000034416.18, intron 18 of 42) protein_coding-intron (ENSMUSG00000034416.18, intron 18 of 42) 10790 ENSMUSG00000085688.1 ENSMUSG00000085688 ENSMUST00000153724 Gm15395 antisense Interval_75741 chr17 70968774 70969065 + 0 NA intron (ENSMUSG00000117079.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000117079.1, intron 1 of 1) 1033 ENSMUSG00000117079.1 ENSMUSG00000117079 ENSMUST00000233521 Gm41611 lincRNA Interval_132636 chr5 146891038 146891686 + 0 NA Intergenic Intergenic 45597 ENSMUSG00000029641.8 ENSMUSG00000029641 ENSMUST00000198570 Rasl11a protein_coding Interval_89963 chr2 26878381 26878924 + 0 NA Intergenic Intergenic -21854 ENSMUSG00000015787.15 ENSMUSG00000015787 ENSMUST00000102900 Abo protein_coding Interval_56576 chr14 120437177 120437854 + 0 NA Intergenic Intergenic -40929 ENSMUSG00000051615.14 ENSMUSG00000051615 ENSMUST00000062117 Rap2a protein_coding Interval_170469 chr9 108182562 108184218 + 0 NA intron (ENSMUSG00000032589.14, intron 1 of 11) protein_coding-intron (ENSMUSG00000032589.14, intron 1 of 11) 6337 ENSMUSG00000103466.1 ENSMUSG00000103466 ENSMUST00000192549 Gm37247 TEC Interval_70635 chr17 12621142 12621799 + 0 NA intron (ENSMUSG00000040966.10, intron 10 of 10) protein_coding-intron (ENSMUSG00000040966.10, intron 10 of 10) 37277 ENSMUSG00000040966.10 ENSMUSG00000040966 ENSMUST00000233066 Slc22a2 protein_coding Interval_121896 chr5 9260904 9261396 + 0 NA exon (ENSMUSG00000080875.4, exon 1 of 1) processed_pseudogene-exon (ENSMUSG00000080875.4, exon 1 of 1) 238 ENSMUSG00000080875.4 ENSMUSG00000080875 ENSMUST00000118351 Gm7332 processed_pseudogene Interval_95472 chr2 109912382 109913848 + 0 NA intron (ENSMUSG00000063751.6, intron 1 of 4) processed_transcript-intron (ENSMUSG00000063751.6, intron 1 of 4) 204 ENSMUSG00000063751.6 ENSMUSG00000063751 ENSMUST00000146110 Platr8 processed_transcript Interval_81600 chr18 61986056 61986763 + 0 NA intron (ENSMUSG00000045629.8, intron 1 of 9) protein_coding-intron (ENSMUSG00000045629.8, intron 8 of 16) 8450 ENSMUSG00000045629.8 ENSMUSG00000045629 ENSMUST00000236759 Sh3tc2 protein_coding Interval_39011 chr12 84442617 84443513 + 0 NA TTS (ENSMUSG00000057265.13) protein_coding-TTS (ENSMUSG00000057265.13) 7883 ENSMUSG00000021238.11 ENSMUSG00000021238 ENSMUST00000222656 Aldh6a1 protein_coding Interval_166314 chr9 58253004 58253719 + 0 NA exon (ENSMUSG00000032333.6, exon 1 of 7) protein_coding-exon (ENSMUSG00000032333.6, exon 1 of 7) 173 ENSMUSG00000032333.6 ENSMUSG00000032333 ENSMUST00000216864 Stoml1 protein_coding Interval_152694 chr7 136379817 136380208 + 0 NA Intergenic Intergenic 26648 ENSMUSG00000109981.1 ENSMUSG00000109981 ENSMUST00000210345 Gm36849 lincRNA Interval_76516 chr17 80705084 80705300 + 0 NA intron (ENSMUSG00000024242.15, intron 1 of 1) protein_coding-intron (ENSMUSG00000024242.15, intron 1 of 33) -22939 ENSMUSG00000054957.5 ENSMUSG00000054957 ENSMUST00000068277 Gm9959 pseudogene Interval_138745 chr6 91597264 91597567 + 0 NA Intergenic Intergenic -1817 ENSMUSG00000108308.1 ENSMUSG00000108308 ENSMUST00000205533 Gm45218 lincRNA Interval_56806 chr14 122205094 122205450 + 0 NA intron (ENSMUSG00000025545.10, intron 1 of 7) protein_coding-intron (ENSMUSG00000025545.10, intron 1 of 7) 28382 ENSMUSG00000100585.1 ENSMUSG00000100585 ENSMUST00000187423 1700108J01Rik antisense Interval_90350 chr2 29917680 29918592 + 0 NA exon (ENSMUSG00000026790.19, exon 3 of 3) protein_coding-exon (ENSMUSG00000026790.19, exon 3 of 3) 13387 ENSMUSG00000088348.1 ENSMUSG00000088348 ENSMUST00000157723 Gm23865 snRNA Interval_69480 chr16 93799997 93800669 + 0 NA TTS (ENSMUSG00000022946.10) protein_coding-TTS (ENSMUSG00000022946.10) -5432 ENSMUSG00000097768.2 ENSMUSG00000097768 ENSMUST00000180967 2310043M15Rik antisense Interval_2940 chr1 51399951 51401929 + 0 NA Intergenic Intergenic 57991 ENSMUSG00000101702.1 ENSMUSG00000101702 ENSMUST00000189460 1700072G22Rik lincRNA Interval_149949 chr7 103398176 103399088 + 0 NA Intergenic Intergenic -12455 ENSMUSG00000059874.2 ENSMUSG00000059874 ENSMUST00000218246 Olfr603 protein_coding Interval_34766 chr12 10571599 10572344 + 0 NA Intergenic Intergenic 78471 ENSMUSG00000112127.1 ENSMUSG00000112127 ENSMUST00000219091 Gm48886 processed_pseudogene Interval_107412 chr3 107401938 107402168 + 0 NA Intergenic Intergenic 14142 ENSMUSG00000084640.1 ENSMUSG00000084640 ENSMUST00000122691 Gm24383 misc_RNA Interval_62677 chr15 96210201 96211199 + 0 NA intron (ENSMUSG00000097536.2, intron 1 of 6) lincRNA-intron (ENSMUSG00000097536.2, intron 1 of 6) 43287 ENSMUSG00000097619.8 ENSMUSG00000097619 ENSMUST00000229950 4833422M21Rik processed_transcript Interval_16190 chr10 61335992 61336973 + 0 NA intron (ENSMUSG00000020092.9, intron 3 of 3) protein_coding-intron (ENSMUSG00000020092.9, intron 18 of 19) 5845 ENSMUSG00000020092.9 ENSMUSG00000020092 ENSMUST00000219132 Pald1 protein_coding Interval_48884 chr13 104300115 104300377 + 0 NA intron (ENSMUSG00000046169.10, intron 3 of 24) protein_coding-intron (ENSMUSG00000046169.10, intron 3 of 24) 12411 ENSMUSG00000046169.10 ENSMUSG00000046169 ENSMUST00000224504 Adamts6 protein_coding Interval_170520 chr9 108478404 108480308 + 0 NA promoter-TSS (ENSMUSG00000052911.9) protein_coding-promoter-TSS (ENSMUSG00000052911.9) -516 ENSMUSG00000052911.9 ENSMUSG00000052911 ENSMUST00000194421 Lamb2 protein_coding Interval_153162 chr7 141978004 141978671 + 0 NA intron (ENSMUSG00000053046.16, intron 1 of 19) protein_coding-intron (ENSMUSG00000053046.16, intron 1 of 18) -13842 ENSMUSG00000092652.1 ENSMUSG00000092652 ENSMUST00000174911 Mir3104 miRNA Interval_113204 chr4 49688545 49689822 + 0 NA intron (ENSMUSG00000039579.15, intron 6 of 8) protein_coding-intron (ENSMUSG00000039579.15, intron 6 of 8) -7159 ENSMUSG00000028310.2 ENSMUSG00000028310 ENSMUST00000029991 Ppp3r2 protein_coding Interval_30360 chr11 93862962 93863420 + 0 NA intron (ENSMUSG00000054079.12, intron 10 of 12) protein_coding-intron (ENSMUSG00000054079.12, intron 11 of 13) 12952 ENSMUSG00000054079.12 ENSMUSG00000054079 ENSMUST00000134807 Utp18 protein_coding Interval_118957 chr4 134703277 134704906 + 0 NA promoter-TSS (ENSMUSG00000037306.13) protein_coding-promoter-TSS (ENSMUSG00000037306.13) -324 ENSMUSG00000037306.13 ENSMUSG00000037306 ENSMUST00000176606 Man1c1 protein_coding Interval_54565 chr14 70704341 70704747 + 0 NA intron (ENSMUSG00000022100.14, intron 3 of 27) protein_coding-intron (ENSMUSG00000022100.14, intron 3 of 27) 3491 ENSMUSG00000022100.14 ENSMUSG00000022100 ENSMUST00000227550 Xpo7 protein_coding Interval_16197 chr10 61381807 61383995 + 0 NA promoter-TSS (ENSMUSG00000020092.9) protein_coding-promoter-TSS (ENSMUSG00000020092.9) -1853 ENSMUSG00000112875.1 ENSMUSG00000112875 ENSMUST00000219196 Gm48074 TEC Interval_154544 chr8 19246851 19247324 + 0 NA promoter-TSS (ENSMUSG00000039785.5) protein_coding-promoter-TSS (ENSMUSG00000039785.5) -493 ENSMUSG00000039785.5 ENSMUSG00000039785 ENSMUST00000110763 Defb5 protein_coding Interval_91900 chr2 51131116 51131590 + 0 NA TTS (ENSMUSG00000017144.8) protein_coding-TTS (ENSMUSG00000017144.8) 17757 ENSMUSG00000017144.8 ENSMUSG00000017144 ENSMUST00000140864 Rnd3 protein_coding Interval_123222 chr5 30737673 30738632 + 0 NA intron (ENSMUSG00000029168.14, intron 1 of 12) protein_coding-intron (ENSMUSG00000029168.14, intron 1 of 12) -20880 ENSMUSG00000106173.1 ENSMUSG00000106173 ENSMUST00000197835 Gm42764 sense_intronic Interval_59390 chr15 52045941 52046145 + 0 NA TTS (ENSMUSG00000068522.4) protein_coding-TTS (ENSMUSG00000068522.4) 5936 ENSMUSG00000068522.4 ENSMUSG00000068522 ENSMUST00000090025 Aard protein_coding Interval_45922 chr13 59319011 59321273 + 0 NA intron (ENSMUSG00000114240.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000114240.1, intron 1 of 1) 10101 ENSMUSG00000114240.1 ENSMUSG00000114240 ENSMUST00000224237 Gm47360 lincRNA Interval_155994 chr8 41611179 41611476 + 0 NA Intergenic Intergenic -1658 ENSMUSG00000098149.1 ENSMUSG00000098149 ENSMUST00000183246 Gapdh-ps14 processed_pseudogene Interval_142937 chr6 147090799 147092525 + 0 NA exon (ENSMUSG00000040102.10, exon 1 of 3) protein_coding-exon (ENSMUSG00000040102.10, exon 1 of 3) -4661 ENSMUSG00000072662.2 ENSMUSG00000072662 ENSMUST00000123367 Mansc4 protein_coding Interval_170470 chr9 108189675 108190647 + 0 NA promoter-TSS (ENSMUSG00000103466.1) TEC-promoter-TSS (ENSMUSG00000103466.1) -434 ENSMUSG00000103466.1 ENSMUSG00000103466 ENSMUST00000192549 Gm37247 TEC Interval_60052 chr15 64250242 64251265 + 0 NA intron (ENSMUSG00000022377.16, intron 2 of 4) protein_coding-intron (ENSMUSG00000022377.16, intron 3 of 30) -63744 ENSMUSG00000115752.1 ENSMUSG00000115752 ENSMUST00000226773 1700010G06Rik antisense Interval_90305 chr2 29678654 29679390 + 0 NA intron (ENSMUSG00000039844.20, intron 1 of 23) protein_coding-intron (ENSMUSG00000039844.20, intron 1 of 25) 35207 ENSMUSG00000039844.20 ENSMUSG00000039844 ENSMUST00000123953 Rapgef1 protein_coding Interval_43649 chr13 34460716 34462393 + 0 NA Intergenic Intergenic -35123 ENSMUSG00000114170.1 ENSMUSG00000114170 ENSMUST00000222063 Gm47120 processed_pseudogene Interval_107070 chr3 103287580 103288604 + 0 NA intron (ENSMUSG00000033014.12, intron 1 of 18) protein_coding-intron (ENSMUSG00000033014.12, intron 1 of 19) -37994 ENSMUSG00000033014.12 ENSMUSG00000033014 ENSMUST00000197365 Trim33 protein_coding Interval_121418 chr4 155687487 155688426 + 0 NA Intergenic Intergenic -6386 ENSMUSG00000074738.2 ENSMUSG00000074738 ENSMUST00000099265 Fndc10 protein_coding Interval_158698 chr8 85379114 85380486 + 0 NA intron (ENSMUSG00000031698.14, intron 1 of 2) protein_coding-intron (ENSMUSG00000031698.14, intron 1 of 12) 1234 ENSMUSG00000031698.14 ENSMUSG00000031698 ENSMUST00000138825 Mylk3 protein_coding Interval_134309 chr6 24817715 24817954 + 0 NA Intergenic Intergenic -19460 ENSMUSG00000107223.1 ENSMUSG00000107223 ENSMUST00000202426 Gm18327 processed_pseudogene Interval_151898 chr7 127404993 127405280 + 0 NA exon (ENSMUSG00000045757.6, exon 3 of 3) protein_coding-exon (ENSMUSG00000045757.6, exon 3 of 3) 1647 ENSMUSG00000045757.6 ENSMUSG00000045757 ENSMUST00000139118 Zfp764 protein_coding Interval_56127 chr14 106164111 106164332 + 0 NA Intergenic Intergenic 47757 ENSMUSG00000115501.1 ENSMUSG00000115501 ENSMUST00000226534 Gm48971 processed_pseudogene Interval_11276 chr1 180656863 180657425 + 0 NA intron (ENSMUSG00000058729.13, intron 4 of 14) protein_coding-intron (ENSMUSG00000058729.13, intron 4 of 11) -23743 ENSMUSG00000058729.13 ENSMUSG00000058729 ENSMUST00000194847 Lin9 protein_coding Interval_127597 chr5 105690425 105690684 + 0 NA Intergenic Intergenic -40835 ENSMUSG00000046079.16 ENSMUSG00000046079 ENSMUST00000134605 Lrrc8d protein_coding Interval_79009 chr18 23909164 23909887 + 0 NA Intergenic Intergenic -34372 ENSMUSG00000117504.1 ENSMUSG00000117504 ENSMUST00000235052 Gm46611 processed_pseudogene Interval_35326 chr12 20661329 20661578 + 0 NA intron (ENSMUSG00000113157.2, intron 1 of 1) processed_transcript-intron (ENSMUSG00000113157.2, intron 1 of 1) -4888 ENSMUSG00000116635.1 ENSMUSG00000116635 ENSMUST00000232444 Gm49699 transcribed_unprocessed_pseudogene Interval_23590 chr11 23613071 23613561 + 0 NA intron (ENSMUSG00000042208.15, intron 8 of 21) protein_coding-intron (ENSMUSG00000042208.15, intron 6 of 19) 13545 ENSMUSG00000089103.1 ENSMUSG00000089103 ENSMUST00000158478 Gm23114 rRNA Interval_116506 chr4 114847866 114848088 + 0 NA intron (ENSMUSG00000055198.3, intron 3 of 3) protein_coding-intron (ENSMUSG00000055198.3, intron 3 of 3) -2860 ENSMUSG00000087923.1 ENSMUSG00000087923 ENSMUST00000157298 Gm23230 snRNA Interval_65195 chr16 20455960 20456234 + 0 NA Intergenic Intergenic 10444 ENSMUSG00000088049.1 ENSMUSG00000088049 ENSMUST00000157424 Gm23332 misc_RNA Interval_104860 chr3 76109801 76110122 + 0 NA intron (ENSMUSG00000034098.14, intron 1 of 15) protein_coding-intron (ENSMUSG00000034098.14, intron 1 of 15) -68238 ENSMUSG00000104223.1 ENSMUSG00000104223 ENSMUST00000194986 Gm18428 processed_pseudogene Interval_73555 chr17 40391871 40392038 + 0 NA Intergenic Intergenic -26713 ENSMUSG00000117162.1 ENSMUSG00000117162 ENSMUST00000233579 Gm49840 processed_pseudogene Interval_78086 chr18 7862568 7864127 + 0 NA Intergenic Intergenic 5766 ENSMUSG00000117505.1 ENSMUSG00000117505 ENSMUST00000234126 Gm9993 antisense Interval_119247 chr4 136442340 136443159 + 0 NA TTS (ENSMUSG00000070687.11) protein_coding-TTS (ENSMUSG00000070687.11) 18137 ENSMUSG00000070687.11 ENSMUSG00000070687 ENSMUST00000133818 Htr1d protein_coding Interval_85891 chr19 32779240 32780427 + 0 NA intron (ENSMUSG00000013663.7, intron 2 of 4) protein_coding-intron (ENSMUSG00000013663.7, intron 2 of 8) -31392 ENSMUSG00000013663.7 ENSMUSG00000013663 ENSMUST00000154806 Pten protein_coding Interval_121866 chr5 8990674 8992078 + 0 NA intron (ENSMUSG00000003623.4, intron 2 of 4) protein_coding-intron (ENSMUSG00000003623.4, intron 3 of 17) 5666 ENSMUSG00000003623.4 ENSMUSG00000003623 ENSMUST00000157024 Crot protein_coding Interval_28910 chr11 79220967 79221181 + 0 NA Intergenic Intergenic 8278 ENSMUSG00000081000.1 ENSMUSG00000081000 ENSMUST00000121698 Gm11200 processed_pseudogene Interval_120903 chr4 151441119 151441395 + 0 NA intron (ENSMUSG00000014592.21, intron 5 of 24) protein_coding-intron (ENSMUSG00000014592.21, intron 5 of 23) 64787 ENSMUSG00000085593.1 ENSMUSG00000085593 ENSMUST00000129097 4930589P08Rik antisense Interval_97952 chr2 146073375 146073819 + 0 NA intron (ENSMUSG00000037143.17, intron 1 of 10) protein_coding-intron (ENSMUSG00000037143.17, intron 1 of 6) -138883 ENSMUSG00000001767.5 ENSMUSG00000001767 ENSMUST00000147904 Crnkl1 protein_coding Interval_64521 chr16 13030234 13030445 + 0 NA Intergenic Intergenic -78876 ENSMUSG00000116170.1 ENSMUSG00000116170 ENSMUST00000230534 Gm6332 processed_pseudogene Interval_51953 chr14 34209316 34210342 + 0 NA Intergenic Intergenic -8196 ENSMUSG00000071531.3 ENSMUSG00000071531 ENSMUST00000096019 Gprin2 protein_coding Interval_133892 chr6 14473078 14473393 + 0 NA Intergenic Intergenic -16085 ENSMUSG00000077334.1 ENSMUSG00000077334 ENSMUST00000104146 Gm23013 snRNA Interval_41849 chr13 3488335 3489041 + 0 NA TTS (ENSMUSG00000097709.8) lincRNA-TTS (ENSMUSG00000097709.8) 10421 ENSMUSG00000097709.8 ENSMUSG00000097709 ENSMUST00000188642 2810429I04Rik lincRNA Interval_158049 chr8 78304560 78305005 + 0 NA intron (ENSMUSG00000037101.16, intron 6 of 10) protein_coding-intron (ENSMUSG00000037101.16, intron 9 of 13) 91432 ENSMUSG00000037101.16 ENSMUSG00000037101 ENSMUST00000124713 Ttc29 protein_coding Interval_133212 chr5 150593206 150594968 + 0 NA promoter-TSS (ENSMUSG00000041132.11) protein_coding-promoter-TSS (ENSMUSG00000041132.11) 3101 ENSMUSG00000041132.11 ENSMUSG00000041132 ENSMUST00000200926 N4bp2l1 protein_coding Interval_164271 chr9 34837554 34838100 + 0 NA intron (ENSMUSG00000032036.15, intron 1 of 15) protein_coding-intron (ENSMUSG00000032036.15, intron 1 of 16) 91682 ENSMUSG00000053889.5 ENSMUSG00000053889 ENSMUST00000066604 Kirrel3os antisense Interval_84979 chr19 20923333 20925752 + 0 NA intron (ENSMUSG00000118293.1, intron 1 of 4) protein_coding-intron (ENSMUSG00000024749.9, intron 2 of 20) 2150 ENSMUSG00000118293.1 ENSMUSG00000118293 ENSMUST00000238088 Gm32750 antisense Interval_163734 chr9 25041158 25042883 + 0 NA Intergenic Intergenic -15030 ENSMUSG00000111751.1 ENSMUSG00000111751 ENSMUST00000215876 Gm48256 lincRNA Interval_97219 chr2 132308798 132309092 + 0 NA exon (ENSMUSG00000058793.14, exon 13 of 13) protein_coding-exon (ENSMUSG00000058793.14, exon 13 of 13) 45704 ENSMUSG00000058793.14 ENSMUSG00000058793 ENSMUST00000138194 Cds2 protein_coding Interval_98207 chr2 149886182 149886753 + 0 NA intron (ENSMUSG00000074736.10, intron 2 of 2) protein_coding-intron (ENSMUSG00000074736.10, intron 1 of 4) -54825 ENSMUSG00000074737.2 ENSMUSG00000074737 ENSMUST00000099264 C530025M09Rik antisense Interval_148621 chr7 83438763 83439276 + 0 NA Intergenic Intergenic 27042 ENSMUSG00000108831.1 ENSMUSG00000108831 ENSMUST00000207404 Gm7957 processed_pseudogene Interval_137429 chr6 72216662 72217694 + 0 NA intron (ENSMUSG00000037621.8, intron 3 of 3) protein_coding-intron (ENSMUSG00000037621.8, intron 2 of 2) 18052 ENSMUSG00000037621.8 ENSMUSG00000037621 ENSMUST00000206553 Atoh8 protein_coding Interval_16202 chr10 61408025 61408502 + 0 NA Intergenic Intergenic -9709 ENSMUSG00000037171.6 ENSMUSG00000037171 ENSMUST00000049339 Nodal protein_coding Interval_155302 chr8 31089319 31090527 + 0 NA intron (ENSMUSG00000039661.14, intron 1 of 3) protein_coding-intron (ENSMUSG00000039661.14, intron 1 of 4) 285 ENSMUSG00000039661.14 ENSMUSG00000039661 ENSMUST00000160700 Dusp26 protein_coding Interval_107166 chr3 104125037 104125540 + 0 NA intron (ENSMUSG00000052539.15, intron 1 of 20) protein_coding-intron (ENSMUSG00000052539.15, intron 1 of 21) -4136 ENSMUSG00000105793.1 ENSMUSG00000105793 ENSMUST00000199931 Gm17956 processed_pseudogene Interval_53758 chr14 61556231 61557527 + 0 NA promoter-TSS (ENSMUSG00000021930.14) protein_coding-promoter-TSS (ENSMUSG00000021930.14) -121 ENSMUSG00000021930.14 ENSMUSG00000021930 ENSMUST00000100496 Spryd7 protein_coding Interval_174414 chrX 151890785 151891487 + 0 NA TTS (ENSMUSG00000025261.18) protein_coding-TTS (ENSMUSG00000025261.18) -21210 ENSMUSG00000065602.1 ENSMUSG00000065602 ENSMUST00000083668 Mirlet7f-2 miRNA Interval_135935 chr6 48903478 48903669 + 0 NA intron (ENSMUSG00000029811.14, intron 1 of 4) protein_coding-intron (ENSMUSG00000029811.14, intron 1 of 4) -26322 ENSMUSG00000029813.8 ENSMUSG00000029813 ENSMUST00000031837 Doxl1 protein_coding Interval_72822 chr17 32388426 32389899 + 0 NA promoter-TSS (ENSMUSG00000024050.18) protein_coding-promoter-TSS (ENSMUSG00000024050.18) 151 ENSMUSG00000084600.1 ENSMUSG00000084600 ENSMUST00000122651 Gm22201 miRNA Interval_100781 chr2 172498759 172499325 + 0 NA Intergenic Intergenic 10649 ENSMUSG00000081344.5 ENSMUSG00000081344 ENSMUST00000121320 Gm14303 processed_pseudogene Interval_104565 chr3 68272045 68272271 + 0 NA intron (ENSMUSG00000027777.15, intron 1 of 6) protein_coding-intron (ENSMUSG00000027777.15, intron 1 of 7) -61038 ENSMUSG00000102846.1 ENSMUSG00000102846 ENSMUST00000193165 Gm10292 processed_pseudogene Interval_77494 chr17 90235052 90235308 + 0 NA intron (ENSMUSG00000024109.18, intron 2 of 2) protein_coding-intron (ENSMUSG00000024109.18, intron 16 of 20) -27372 ENSMUSG00000092706.1 ENSMUSG00000092706 ENSMUST00000174965 Gm24510 miRNA Interval_20841 chr10 121429986 121430763 + 0 NA intron (ENSMUSG00000112009.1, intron 1 of 1) protein_coding-intron (ENSMUSG00000025795.8, intron 1 of 4) 29661 ENSMUSG00000112209.1 ENSMUSG00000112209 ENSMUST00000218038 Gm18730 processed_pseudogene Interval_33929 chr11 119492896 119493141 + 0 NA intron (ENSMUSG00000039850.16, intron 1 of 3) protein_coding-intron (ENSMUSG00000039850.16, intron 2 of 8) 1467 ENSMUSG00000039850.16 ENSMUSG00000039850 ENSMUST00000132015 Endov protein_coding Interval_7196 chr1 127701700 127702660 + 0 NA Intergenic Intergenic -22632 ENSMUSG00000026347.13 ENSMUSG00000026347 ENSMUST00000162406 Tmem163 protein_coding Interval_114165 chr4 65589791 65590101 + 0 NA intron (ENSMUSG00000028373.16, intron 15 of 21) protein_coding-intron (ENSMUSG00000028373.16, intron 16 of 22) -15303 ENSMUSG00000051675.13 ENSMUSG00000051675 ENSMUST00000156922 Trim32 protein_coding Interval_2321 chr1 38049671 38049859 + 0 NA TTS (ENSMUSG00000026083.12) protein_coding-TTS (ENSMUSG00000026083.12) 5131 ENSMUSG00000026083.12 ENSMUSG00000026083 ENSMUST00000195664 Eif5b protein_coding Interval_77117 chr17 86690435 86691933 + 0 NA Intergenic Intergenic -5688 ENSMUSG00000117568.1 ENSMUSG00000117568 ENSMUST00000234033 Gm18832 processed_pseudogene Interval_76024 chr17 74449066 74450084 + 0 NA intron (ENSMUSG00000039193.9, intron 1 of 7) protein_coding-intron (ENSMUSG00000039193.9, intron 2 of 8) -1369 ENSMUSG00000039193.9 ENSMUSG00000039193 ENSMUST00000234086 Nlrc4 protein_coding Interval_112934 chr4 46175440 46177340 + 0 NA intron (ENSMUSG00000028329.13, intron 3 of 3) protein_coding-intron (ENSMUSG00000028329.13, intron 5 of 5) 11194 ENSMUSG00000028330.8 ENSMUSG00000028330 ENSMUST00000133286 Ncbp1 protein_coding Interval_141409 chr6 128082065 128082341 + 0 NA intron (ENSMUSG00000030352.15, intron 2 of 2) protein_coding-intron (ENSMUSG00000030352.15, intron 2 of 8) 12823 ENSMUSG00000076327.1 ENSMUSG00000076327 ENSMUST00000102372 Gm26338 miRNA Interval_145996 chr7 42978528 42978930 + 0 NA Intergenic Intergenic 20378 ENSMUSG00000076190.1 ENSMUSG00000076190 ENSMUST00000102235 Gm23256 miRNA Interval_67922 chr16 59565367 59566114 + 0 NA intron (ENSMUSG00000022723.16, intron 2 of 21) protein_coding-intron (ENSMUSG00000022723.16, intron 2 of 21) -35549 ENSMUSG00000022723.16 ENSMUSG00000022723 ENSMUST00000139989 Crybg3 protein_coding Interval_170846 chr9 111125595 111125944 + 0 NA intron (ENSMUSG00000032497.19, intron 1 of 27) protein_coding-intron (ENSMUSG00000032497.19, intron 2 of 14) -48447 ENSMUSG00000032497.19 ENSMUSG00000032497 ENSMUST00000196906 Lrrfip2 protein_coding Interval_166464 chr9 59706684 59708177 + 0 NA promoter-TSS (ENSMUSG00000074259.10) protein_coding-promoter-TSS (ENSMUSG00000074259.10) -6686 ENSMUSG00000074259.10 ENSMUSG00000074259 ENSMUST00000143224 Gramd2 protein_coding Interval_27747 chr11 69767611 69767899 + 0 NA intron (ENSMUSG00000018750.14, intron 1 of 2) protein_coding-intron (ENSMUSG00000018750.14, intron 1 of 3) 1739 ENSMUSG00000018750.14 ENSMUSG00000018750 ENSMUST00000108638 Zbtb4 protein_coding Interval_85730 chr19 30144922 30145690 + 0 NA promoter-TSS (ENSMUSG00000024827.10) protein_coding-promoter-TSS (ENSMUSG00000024827.10) -75 ENSMUSG00000024827.10 ENSMUSG00000024827 ENSMUST00000235203 Gldc protein_coding Interval_131161 chr5 135493198 135494541 + 0 NA intron (ENSMUSG00000039959.13, intron 1 of 1) protein_coding-intron (ENSMUSG00000039959.13, intron 1 of 30) -20450 ENSMUSG00000106758.1 ENSMUSG00000106758 ENSMUST00000201839 Gm42731 TEC Interval_89405 chr2 20496069 20497027 + 0 NA intron (ENSMUSG00000036617.17, intron 2 of 3) protein_coding-intron (ENSMUSG00000036617.17, intron 3 of 7) -13499 ENSMUSG00000036617.17 ENSMUSG00000036617 ENSMUST00000156587 Etl4 protein_coding Interval_19088 chr10 94408025 94409375 + 0 NA promoter-TSS (ENSMUSG00000085409.1) sense_intronic-promoter-TSS (ENSMUSG00000085409.1) -191 ENSMUSG00000085409.1 ENSMUSG00000085409 ENSMUST00000155180 Gm16155 sense_intronic Interval_118564 chr4 132529984 132530277 + 0 NA TTS (ENSMUSG00000054428.12) protein_coding-TTS (ENSMUSG00000054428.12) -2557 ENSMUSG00000087352.1 ENSMUSG00000087352 ENSMUST00000124471 Gm12999 antisense Interval_34091 chr11 120476873 120477881 + 0 NA promoter-TSS (ENSMUSG00000025793.17) protein_coding-promoter-TSS (ENSMUSG00000025793.17) -7650 ENSMUSG00000039640.7 ENSMUSG00000039640 ENSMUST00000137619 Mrpl12 protein_coding Interval_168239 chr9 78127305 78128323 + 0 NA intron (ENSMUSG00000009828.15, intron 1 of 1) protein_coding-intron (ENSMUSG00000009828.15, intron 1 of 13) 14971 ENSMUSG00000009828.15 ENSMUSG00000009828 ENSMUST00000142402 Cilk1 protein_coding Interval_79319 chr18 30439037 30439275 + 0 NA Intergenic Intergenic -9295 ENSMUSG00000117419.1 ENSMUSG00000117419 ENSMUST00000234371 Gm7930 unprocessed_pseudogene Interval_17985 chr10 81244531 81245036 + 0 NA intron (ENSMUSG00000034949.18, intron 7 of 15) protein_coding-intron (ENSMUSG00000034949.18, intron 8 of 17) -4268 ENSMUSG00000034949.18 ENSMUSG00000034949 ENSMUST00000148029 Zfr2 protein_coding Interval_100817 chr2 172697743 172698024 + 0 NA Intergenic Intergenic 146892 ENSMUSG00000028640.11 ENSMUSG00000028640 ENSMUST00000142633 Tfap2c protein_coding Interval_110473 chr3 159010981 159011780 + 0 NA Intergenic Intergenic 50934 ENSMUSG00000097966.1 ENSMUSG00000097966 ENSMUST00000183173 Gm9423 processed_pseudogene Interval_111286 chr4 17203681 17203925 + 0 NA Intergenic Intergenic 52558 ENSMUSG00000083572.1 ENSMUSG00000083572 ENSMUST00000121293 Gm11849 processed_pseudogene Interval_161285 chr8 119496776 119497643 + 0 NA promoter-TSS (ENSMUSG00000034224.14) protein_coding-promoter-TSS (ENSMUSG00000034224.14) 4085 ENSMUSG00000034224.14 ENSMUSG00000034224 ENSMUST00000133821 Slc38a8 protein_coding Interval_15975 chr10 59812681 59813389 + 0 NA intron (ENSMUSG00000020111.15, intron 8 of 12) protein_coding-intron (ENSMUSG00000020111.15, intron 10 of 13) 4762 ENSMUSG00000094824.1 ENSMUSG00000094824 ENSMUST00000104610 Gm23803 snoRNA Interval_56394 chr14 118415609 118416540 + 0 NA Intergenic Intergenic -39880 ENSMUSG00000115515.1 ENSMUSG00000115515 ENSMUST00000226188 Gm5672 processed_pseudogene Interval_88623 chr2 7063704 7065277 + 0 NA intron (ENSMUSG00000002107.18, intron 2 of 11) protein_coding-intron (ENSMUSG00000002107.18, intron 2 of 15) 11924 ENSMUSG00000065824.1 ENSMUSG00000065824 ENSMUST00000083890 Gm26315 misc_RNA Interval_39369 chr12 86946476 86947879 + 0 NA promoter-TSS (ENSMUSG00000034157.12) protein_coding-promoter-TSS (ENSMUSG00000034157.12) -5480 ENSMUSG00000034157.12 ENSMUSG00000034157 ENSMUST00000191463 Cipc protein_coding Interval_124464 chr5 48372048 48373057 + 0 NA exon (ENSMUSG00000029089.8, exon 1 of 8) protein_coding-exon (ENSMUSG00000029089.8, exon 1 of 8) 119 ENSMUSG00000029089.8 ENSMUSG00000029089 ENSMUST00000199818 5730480H06Rik protein_coding Interval_29662 chr11 85885835 85886727 + 0 NA promoter-TSS (ENSMUSG00000000094.12) protein_coding-promoter-TSS (ENSMUSG00000000094.12) -141 ENSMUSG00000000094.12 ENSMUSG00000000094 ENSMUST00000108045 Tbx4 protein_coding Interval_159730 chr8 99613075 99613305 + 0 NA intron (ENSMUSG00000052479.5, intron 1 of 4) lincRNA-intron (ENSMUSG00000052479.5, intron 1 of 4) -50829 ENSMUSG00000083586.2 ENSMUSG00000083586 ENSMUST00000118240 Gm8688 unprocessed_pseudogene Interval_94159 chr2 84756691 84757537 + 0 NA Intergenic Intergenic -13459 ENSMUSG00000097187.1 ENSMUSG00000097187 ENSMUST00000181711 Gm19426 protein_coding Interval_25666 chr11 50581607 50581843 + 0 NA Intergenic Intergenic -20359 ENSMUSG00000036545.9 ENSMUSG00000036545 ENSMUST00000127534 Adamts2 protein_coding Interval_20504 chr10 118034277 118035346 + 0 NA Intergenic Intergenic 29873 ENSMUSG00000102896.1 ENSMUSG00000102896 ENSMUST00000193027 Gm37852 TEC Interval_14625 chr10 37206974 37207506 + 0 NA Intergenic Intergenic 56508 ENSMUSG00000110799.1 ENSMUSG00000110799 ENSMUST00000217044 4930543K20Rik lincRNA Interval_146381 chr7 45610192 45610462 + 0 NA Intergenic Intergenic 5163 ENSMUSG00000030827.5 ENSMUSG00000030827 ENSMUST00000033099 Fgf21 protein_coding Interval_13229 chr10 13309762 13309964 + 0 NA intron (ENSMUSG00000062866.16, intron 1 of 12) protein_coding-intron (ENSMUSG00000062866.16, intron 1 of 12) 78868 ENSMUSG00000062866.16 ENSMUSG00000062866 ENSMUST00000154265 Phactr2 protein_coding Interval_145538 chr7 35467453 35468537 + 0 NA Intergenic Intergenic 18895 ENSMUSG00000030492.16 ENSMUSG00000030492 ENSMUST00000141245 Slc7a9 protein_coding Interval_41489 chr12 115055547 115055916 + 0 NA promoter-TSS (ENSMUSG00000076710.2) IG_V_gene-promoter-TSS (ENSMUSG00000076710.2) -75 ENSMUSG00000076710.2 ENSMUSG00000076710 ENSMUST00000192724 Ighv1-49 IG_V_gene Interval_157298 chr8 69121278 69122680 + 0 NA Intergenic Intergenic -32744 ENSMUSG00000036330.12 ENSMUSG00000036330 ENSMUST00000142710 Slc18a1 protein_coding Interval_4588 chr1 75282620 75283538 + 0 NA Intergenic Intergenic -8816 ENSMUSG00000033061.15 ENSMUSG00000033061 ENSMUST00000189203 Resp18 protein_coding Interval_90926 chr2 33505948 33506183 + 0 NA Intergenic Intergenic 16283 ENSMUSG00000086939.1 ENSMUSG00000086939 ENSMUST00000134014 Gm13530 lincRNA Interval_161349 chr8 119895215 119896208 + 0 NA Intergenic Intergenic -15130 ENSMUSG00000092329.1 ENSMUSG00000092329 ENSMUST00000127664 Galnt2l protein_coding Interval_115239 chr4 94726503 94726877 + 0 NA Intergenic Intergenic 47510 ENSMUSG00000028576.12 ENSMUSG00000028576 ENSMUST00000152289 Ift74 protein_coding Interval_97583 chr2 140125671 140125916 + 0 NA intron (ENSMUSG00000045624.15, intron 11 of 13) protein_coding-intron (ENSMUSG00000045624.15, intron 11 of 13) -15391 ENSMUSG00000083110.1 ENSMUSG00000083110 ENSMUST00000117344 Gm14073 processed_pseudogene Interval_152785 chr7 137498811 137499291 + 0 NA Intergenic Intergenic 61386 ENSMUSG00000031068.8 ENSMUSG00000031068 ENSMUST00000211598 Glrx3 protein_coding Interval_69043 chr16 90275262 90275708 + 0 NA intron (ENSMUSG00000022983.16, intron 1 of 19) protein_coding-intron (ENSMUSG00000022983.16, intron 1 of 19) 9018 ENSMUSG00000022983.16 ENSMUSG00000022983 ENSMUST00000231776 Scaf4 protein_coding Interval_107345 chr3 106051630 106052516 + 0 NA Intergenic Intergenic -8642 ENSMUSG00000105277.1 ENSMUSG00000105277 ENSMUST00000196322 Gm9504 processed_pseudogene Interval_17694 chr10 79570623 79570951 + 0 NA Intergenic Intergenic 9333 ENSMUSG00000020317.14 ENSMUSG00000020317 ENSMUST00000020566 Theg protein_coding Interval_103987 chr3 56239873 56240080 + 0 NA Intergenic Intergenic -72407 ENSMUSG00000105293.1 ENSMUSG00000105293 ENSMUST00000196328 Gm42843 TEC Interval_122455 chr5 22978399 22978685 + 0 NA intron (ENSMUSG00000106379.1, intron 1 of 3) protein_coding-intron (ENSMUSG00000106379.1, intron 1 of 3) -46529 ENSMUSG00000060879.3 ENSMUSG00000060879 ENSMUST00000075377 Gm6564 processed_pseudogene Interval_23397 chr11 22218528 22218809 + 0 NA intron (ENSMUSG00000042302.14, intron 5 of 24) protein_coding-intron (ENSMUSG00000042302.14, intron 4 of 23) 68127 ENSMUSG00000042302.14 ENSMUSG00000042302 ENSMUST00000137594 Ehbp1 protein_coding Interval_2889 chr1 47929796 47930114 + 0 NA Intergenic Intergenic -14140 ENSMUSG00000101996.1 ENSMUSG00000101996 ENSMUST00000186401 Gm19206 processed_pseudogene Interval_1219 chr1 17243948 17244129 + 0 NA Intergenic Intergenic 6454 ENSMUSG00000100272.1 ENSMUSG00000100272 ENSMUST00000187478 Gm28785 processed_pseudogene Interval_14247 chr10 29594694 29596176 + 0 NA intron (ENSMUSG00000110831.1, intron 1 of 1) antisense-intron (ENSMUSG00000110831.1, intron 1 of 1) 19141 ENSMUSG00000111046.1 ENSMUSG00000111046 ENSMUST00000217530 Gm46197 processed_pseudogene Interval_122809 chr5 25676215 25677192 + 0 NA Intergenic Intergenic 12692 ENSMUSG00000106241.1 ENSMUSG00000106241 ENSMUST00000196083 Gm43143 TEC Interval_103069 chr3 34893791 34895415 + 0 NA Intergenic Intergenic 28048 ENSMUSG00000098862.1 ENSMUSG00000098862 ENSMUST00000183357 Mir6378 miRNA Interval_163164 chr9 16314609 16315348 + 0 NA intron (ENSMUSG00000074505.6, intron 2 of 25) protein_coding-intron (ENSMUSG00000074505.6, intron 1 of 24) 120417 ENSMUSG00000111652.1 ENSMUSG00000111652 ENSMUST00000215220 Gm48726 TEC Interval_1201 chr1 16975196 16975652 + 0 NA intron (ENSMUSG00000042686.5, intron 3 of 3) protein_coding-intron (ENSMUSG00000042686.5, intron 3 of 3) 28795 ENSMUSG00000042686.5 ENSMUSG00000042686 ENSMUST00000038382 Jph1 protein_coding Interval_52876 chr14 51516189 51517059 + 0 NA intron (ENSMUSG00000068399.5, intron 3 of 6) protein_coding-intron (ENSMUSG00000068399.5, intron 3 of 6) -36166 ENSMUSG00000079244.3 ENSMUSG00000079244 ENSMUST00000096170 Gm5622 protein_coding Interval_22863 chr11 16844023 16844706 + 0 NA intron (ENSMUSG00000020122.16, intron 1 of 15) protein_coding-intron (ENSMUSG00000020122.16, intron 1 of 27) -13662 ENSMUSG00000085091.1 ENSMUSG00000085091 ENSMUST00000150329 Egfros antisense Interval_113472 chr4 55247781 55249512 + 0 NA intron (ENSMUSG00000087614.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000087614.1, intron 1 of 2) -6094 ENSMUSG00000081504.3 ENSMUSG00000081504 ENSMUST00000121282 Gm12508 processed_pseudogene Interval_120853 chr4 151057433 151058581 + 0 NA promoter-TSS (ENSMUSG00000028955.3) protein_coding-promoter-TSS (ENSMUSG00000028955.3) -61 ENSMUSG00000028955.3 ENSMUSG00000028955 ENSMUST00000125205 Vamp3 protein_coding Interval_174482 chrX 153233186 153233569 + 0 NA Intergenic Intergenic -4089 ENSMUSG00000041649.13 ENSMUSG00000041649 ENSMUST00000039545 Klf8 protein_coding Interval_134745 chr6 31155795 31156104 + 0 NA intron (ENSMUSG00000044471.12, intron 1 of 1) lincRNA-intron (ENSMUSG00000044471.12, intron 2 of 3) -8530 ENSMUSG00000103220.1 ENSMUSG00000103220 ENSMUST00000195025 Gm37728 TEC Interval_139124 chr6 95600578 95600983 + 0 NA intron (ENSMUSG00000061838.7, intron 2 of 3) protein_coding-intron (ENSMUSG00000061838.7, intron 2 of 10) 56688 ENSMUSG00000061838.7 ENSMUSG00000061838 ENSMUST00000203109 Suclg2 protein_coding Interval_72507 chr17 30278937 30279251 + 0 NA intron (ENSMUSG00000062202.14, intron 6 of 7) protein_coding-intron (ENSMUSG00000062202.14, intron 8 of 11) -31985 ENSMUSG00000089222.1 ENSMUSG00000089222 ENSMUST00000158597 Gm25049 snRNA Interval_143162 chr7 4026576 4027477 + 0 NA promoter-TSS (ENSMUSG00000055541.17) protein_coding-promoter-TSS (ENSMUSG00000055541.17) 22 ENSMUSG00000055541.17 ENSMUSG00000055541 ENSMUST00000119711 Lair1 protein_coding Interval_114084 chr4 63307190 63307844 + 0 NA intron (ENSMUSG00000045672.15, intron 33 of 57) protein_coding-intron (ENSMUSG00000045672.15, intron 36 of 60) -37043 ENSMUSG00000039196.2 ENSMUSG00000039196 ENSMUST00000030044 Orm1 protein_coding Interval_126544 chr5 90130054 90130233 + 0 NA Intergenic Intergenic -2086 ENSMUSG00000043618.9 ENSMUSG00000043618 ENSMUST00000135410 Eif5al3-ps processed_pseudogene Interval_134685 chr6 30363535 30365169 + 0 NA Intergenic Intergenic 2866 ENSMUSG00000039130.18 ENSMUSG00000039130 ENSMUST00000129796 Zc3hc1 protein_coding Interval_23431 chr11 22599877 22601081 + 0 NA Intergenic Intergenic -16929 ENSMUSG00000086256.1 ENSMUSG00000086256 ENSMUST00000142151 Gm12052 lincRNA Interval_51619 chr14 30843609 30843844 + 0 NA intron (ENSMUSG00000006526.13, intron 1 of 2) protein_coding-intron (ENSMUSG00000006526.13, intron 1 of 7) 18132 ENSMUSG00000006526.13 ENSMUSG00000006526 ENSMUST00000226788 Stimate protein_coding Interval_19044 chr10 94035117 94036692 + 0 NA promoter-TSS (ENSMUSG00000020021.4) protein_coding-promoter-TSS (ENSMUSG00000020021.4) -103 ENSMUSG00000110869.1 ENSMUSG00000110869 ENSMUST00000214203 Gm49628 TEC Interval_9214 chr1 155098065 155099963 + 0 NA exon (ENSMUSG00000056708.5, exon 1 of 1) protein_coding-exon (ENSMUSG00000056708.5, exon 1 of 1) 622 ENSMUSG00000056708.5 ENSMUSG00000056708 ENSMUST00000055322 Ier5 protein_coding Interval_49984 chr13 119310760 119310984 + 0 NA Intergenic Intergenic -31327 ENSMUSG00000114736.1 ENSMUSG00000114736 ENSMUST00000223952 Gm47336 lincRNA Interval_117896 chr4 126933098 126933765 + 0 NA intron (ENSMUSG00000042446.16, intron 2 of 3) protein_coding-intron (ENSMUSG00000042446.16, intron 2 of 29) 34468 ENSMUSG00000042446.16 ENSMUSG00000042446 ENSMUST00000123597 Zmym4 protein_coding Interval_151963 chr7 127823786 127824942 + 0 NA promoter-TSS (ENSMUSG00000030805.14) protein_coding-promoter-TSS (ENSMUSG00000030805.14) -10857 ENSMUSG00000108808.1 ENSMUSG00000108808 ENSMUST00000206297 Gm45204 TEC Interval_111511 chr4 22295305 22295565 + 0 NA Intergenic Intergenic 19602 ENSMUSG00000083376.1 ENSMUSG00000083376 ENSMUST00000121463 Gm11882 processed_pseudogene Interval_49677 chr13 113938625 113939409 + 0 NA intron (ENSMUSG00000042348.10, intron 4 of 5) protein_coding-intron (ENSMUSG00000042348.10, intron 3 of 4) 144424 ENSMUSG00000042348.10 ENSMUSG00000042348 ENSMUST00000224068 Arl15 protein_coding Interval_167246 chr9 66639525 66639754 + 0 NA Intergenic Intergenic -46633 ENSMUSG00000032376.12 ENSMUSG00000032376 ENSMUST00000139952 Usp3 protein_coding Interval_55400 chr14 86680417 86680676 + 0 NA intron (ENSMUSG00000022021.14, intron 1 of 3) protein_coding-intron (ENSMUSG00000022021.14, intron 27 of 27) 26639 ENSMUSG00000115306.1 ENSMUSG00000115306 ENSMUST00000226731 Gm49159 TEC Interval_45603 chr13 56193409 56194796 + 0 NA Intergenic Intergenic 8835 ENSMUSG00000114341.1 ENSMUSG00000114341 ENSMUST00000225940 Gm47104 processed_pseudogene Interval_123666 chr5 34388092 34388340 + 0 NA intron (ENSMUSG00000037210.16, intron 1 of 20) protein_coding-intron (ENSMUSG00000037210.16, intron 1 of 20) 37100 ENSMUSG00000029110.13 ENSMUSG00000029110 ENSMUST00000183265 Rnf4 protein_coding Interval_171927 chr9 122629425 122629613 + 0 NA intron (ENSMUSG00000097736.8, intron 2 of 3) lincRNA-intron (ENSMUSG00000097736.8, intron 2 of 3) 18311 ENSMUSG00000111143.1 ENSMUSG00000111143 ENSMUST00000216699 Gm47134 lincRNA Interval_68658 chr16 83867452 83867791 + 0 NA Intergenic Intergenic 189763 ENSMUSG00000116745.1 ENSMUSG00000116745 ENSMUST00000231610 Gm41481 lincRNA Interval_11123 chr1 179510529 179512170 + 0 NA intron (ENSMUSG00000055067.15, intron 1 of 1) protein_coding-intron (ENSMUSG00000055067.15, intron 1 of 5) 6656 ENSMUSG00000055067.15 ENSMUSG00000055067 ENSMUST00000194237 Smyd3 protein_coding Interval_126098 chr5 77367601 77368579 + 0 NA intron (ENSMUSG00000036256.13, intron 1 of 4) protein_coding-intron (ENSMUSG00000036256.13, intron 1 of 4) -18509 ENSMUSG00000106828.1 ENSMUSG00000106828 ENSMUST00000202460 Gm34648 antisense Interval_106357 chr3 95595870 95596395 + 0 NA intron (ENSMUSG00000046519.15, intron 2 of 3) protein_coding-intron (ENSMUSG00000046519.15, intron 1 of 3) 7142 ENSMUSG00000046519.15 ENSMUSG00000046519 ENSMUST00000177399 Golph3l protein_coding Interval_45459 chr13 55263848 55264349 + 0 NA intron (ENSMUSG00000021488.8, intron 6 of 20) protein_coding-intron (ENSMUSG00000021488.8, intron 8 of 22) -9697 ENSMUSG00000114359.1 ENSMUSG00000114359 ENSMUST00000224833 Gm47816 processed_pseudogene Interval_123338 chr5 31563374 31565371 + 0 NA exon (ENSMUSG00000107352.1, exon 2 of 2) lincRNA-exon (ENSMUSG00000107352.1, exon 2 of 2) 4700 ENSMUSG00000107352.1 ENSMUSG00000107352 ENSMUST00000200956 Gm43660 lincRNA Interval_18735 chr10 89778222 89778933 + 0 NA intron (ENSMUSG00000019951.10, intron 2 of 11) protein_coding-intron (ENSMUSG00000019951.10, intron 4 of 20) 33339 ENSMUSG00000019951.10 ENSMUSG00000019951 ENSMUST00000219819 Uhrf1bp1l protein_coding Interval_131213 chr5 135850986 135853044 + 0 NA intron (ENSMUSG00000039860.19, intron 3 of 14) protein_coding-intron (ENSMUSG00000039860.19, intron 3 of 15) -7069 ENSMUSG00000085026.1 ENSMUSG00000085026 ENSMUST00000131896 Srrm3os antisense Interval_119012 chr4 134997865 134998714 + 0 NA Intergenic Intergenic 67387 ENSMUSG00000028821.8 ENSMUSG00000028821 ENSMUST00000144037 Syf2 protein_coding Interval_131498 chr5 137582837 137585433 + 0 NA TTS (ENSMUSG00000029716.13) protein_coding-TTS (ENSMUSG00000029716.13) 14271 ENSMUSG00000029716.13 ENSMUSG00000029716 ENSMUST00000199069 Tfr2 protein_coding Interval_58136 chr15 28383616 28384351 + 0 NA intron (ENSMUSG00000022262.8, intron 54 of 78) protein_coding-intron (ENSMUSG00000022262.8, intron 54 of 78) 121208 ENSMUSG00000115473.1 ENSMUSG00000115473 ENSMUST00000228335 Gm49278 processed_pseudogene Interval_107525 chr3 108308507 108308810 + 0 NA intron (ENSMUSG00000068747.14, intron 2 of 20) protein_coding-intron (ENSMUSG00000068747.14, intron 2 of 19) 20777 ENSMUSG00000105358.1 ENSMUSG00000105358 ENSMUST00000198943 Gm43099 TEC Interval_159076 chr8 89630502 89630779 + 0 NA Intergenic Intergenic 36664 ENSMUSG00000088883.1 ENSMUSG00000088883 ENSMUST00000158258 Gm24212 snoRNA Interval_169521 chr9 98809728 98810617 + 0 NA intron (ENSMUSG00000102013.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000102013.1, intron 1 of 2) 9915 ENSMUSG00000102013.1 ENSMUSG00000102013 ENSMUST00000186387 E330023G01Rik lincRNA Interval_141636 chr6 131594637 131595272 + 0 NA Intergenic Intergenic 9844 ENSMUSG00000089792.3 ENSMUSG00000089792 ENSMUST00000159112 Gm16571 transcribed_unprocessed_pseudogene Interval_147296 chr7 65623409 65623659 + 0 NA intron (ENSMUSG00000086232.2, intron 2 of 3) transcribed_unprocessed_pseudogene-intron (ENSMUSG00000086232.2, intron 2 of 3) 12252 ENSMUSG00000086232.2 ENSMUSG00000086232 ENSMUST00000211354 Gm7546 transcribed_unprocessed_pseudogene Interval_159358 chr8 94048802 94049163 + 0 NA exon (ENSMUSG00000110499.1, exon 1 of 1) TEC-exon (ENSMUSG00000110499.1, exon 1 of 1) 201 ENSMUSG00000110499.1 ENSMUSG00000110499 ENSMUST00000211865 Gm45873 TEC Interval_1530 chr1 24901237 24901498 + 0 NA Intergenic Intergenic 10292 ENSMUSG00000100808.1 ENSMUSG00000100808 ENSMUST00000187022 Gm28594 processed_pseudogene Interval_144415 chr7 25017458 25017712 + 0 NA intron (ENSMUSG00000003378.9, intron 16 of 20) protein_coding-intron (ENSMUSG00000003378.9, intron 15 of 19) -11642 ENSMUSG00000040907.15 ENSMUSG00000040907 ENSMUST00000125444 Atp1a3 protein_coding Interval_63469 chr15 101253774 101254887 + 0 NA promoter-TSS (ENSMUSG00000023034.7) protein_coding-promoter-TSS (ENSMUSG00000023034.7) -18531 ENSMUSG00000023034.7 ENSMUSG00000023034 ENSMUST00000231153 Nr4a1 protein_coding Interval_151998 chr7 128067911 128068728 + 0 NA intron (ENSMUSG00000030786.18, intron 2 of 4) protein_coding-intron (ENSMUSG00000030786.18, intron 2 of 29) 5576 ENSMUSG00000030786.18 ENSMUSG00000030786 ENSMUST00000156593 Itgam protein_coding Interval_44505 chr13 45491917 45492746 + 0 NA Intergenic Intergenic -6001 ENSMUSG00000089211.1 ENSMUSG00000089211 ENSMUST00000158586 Gm23387 snRNA Interval_129534 chr5 120751052 120751996 + 0 NA Intergenic Intergenic 5488 ENSMUSG00000107075.1 ENSMUSG00000107075 ENSMUST00000201095 Gm43068 TEC Interval_120487 chr4 148914729 148915459 + 0 NA promoter-TSS (ENSMUSG00000086766.1) antisense-promoter-TSS (ENSMUSG00000086766.1) -770 ENSMUSG00000086766.1 ENSMUSG00000086766 ENSMUST00000151967 Gm15969 antisense Interval_5996 chr1 93801584 93802141 + 0 NA promoter-TSS (ENSMUSG00000026281.15) protein_coding-promoter-TSS (ENSMUSG00000026281.15) -2483 ENSMUSG00000026283.13 ENSMUSG00000026283 ENSMUST00000190476 Ing5 protein_coding Interval_21782 chr11 4315141 4315370 + 0 NA Intergenic Intergenic 9000 ENSMUSG00000065627.1 ENSMUSG00000065627 ENSMUST00000083693 Gm24803 snRNA Interval_161036 chr8 117065576 117065978 + 0 NA exon (ENSMUSG00000034416.18, exon 7 of 43) protein_coding-exon (ENSMUSG00000034416.18, exon 7 of 43) 29280 ENSMUSG00000085688.1 ENSMUSG00000085688 ENSMUST00000153724 Gm15395 antisense Interval_85779 chr19 31046607 31047238 + 0 NA intron (ENSMUSG00000052920.16, intron 3 of 17) protein_coding-intron (ENSMUSG00000052920.16, intron 3 of 17) -35915 ENSMUSG00000053536.7 ENSMUSG00000053536 ENSMUST00000066039 Cstf2t protein_coding Interval_111923 chr4 32572221 32572663 + 0 NA promoter-TSS (ENSMUSG00000086150.1) antisense-promoter-TSS (ENSMUSG00000086150.1) -734 ENSMUSG00000086150.1 ENSMUSG00000086150 ENSMUST00000149084 Bach2os antisense Interval_29154 chr11 80774710 80774990 + 0 NA intron (ENSMUSG00000035441.14, intron 1 of 9) protein_coding-intron (ENSMUSG00000035441.14, intron 1 of 21) 5153 ENSMUSG00000035441.14 ENSMUSG00000035441 ENSMUST00000125944 Myo1d protein_coding Interval_29385 chr11 83557480 83558344 + 0 NA Intergenic Intergenic 19230 ENSMUSG00000019122.8 ENSMUSG00000019122 ENSMUST00000136131 Ccl9 protein_coding Interval_152892 chr7 139528417 139529393 + 0 NA intron (ENSMUSG00000025477.14, intron 2 of 6) protein_coding-intron (ENSMUSG00000025477.14, intron 8 of 15) 12246 ENSMUSG00000025477.14 ENSMUSG00000025477 ENSMUST00000152475 Inpp5a protein_coding Interval_147969 chr7 75955216 75955892 + 0 NA Intergenic Intergenic -45270 ENSMUSG00000108495.1 ENSMUSG00000108495 ENSMUST00000206543 Gm45139 TEC Interval_149890 chr7 102289263 102290090 + 0 NA intron (ENSMUSG00000030987.5, intron 1 of 12) protein_coding-intron (ENSMUSG00000030987.5, intron 1 of 11) 21349 ENSMUSG00000030987.5 ENSMUSG00000030987 ENSMUST00000210544 Stim1 protein_coding Interval_118317 chr4 130264387 130265283 + 0 NA intron (ENSMUSG00000023232.17, intron 3 of 4) protein_coding-intron (ENSMUSG00000023232.17, intron 2 of 9) 10710 ENSMUSG00000023232.17 ENSMUSG00000023232 ENSMUST00000154846 Serinc2 protein_coding Interval_69391 chr16 92644094 92646542 + 0 NA intron (ENSMUSG00000022952.17, intron 3 of 5) protein_coding-intron (ENSMUSG00000022952.17, intron 5 of 7) 32504 ENSMUSG00000097139.3 ENSMUSG00000097139 ENSMUST00000180989 Gm26626 antisense Interval_134540 chr6 29426278 29426757 + 0 NA intron (ENSMUSG00000029769.16, intron 9 of 9) protein_coding-intron (ENSMUSG00000029769.16, intron 17 of 17) -6739 ENSMUSG00000068699.12 ENSMUSG00000068699 ENSMUST00000065090 Flnc protein_coding Interval_164481 chr9 37406335 37406758 + 0 NA intron (ENSMUSG00000032125.21, intron 10 of 17) protein_coding-intron (ENSMUSG00000032125.21, intron 10 of 17) 4500 ENSMUSG00000032125.21 ENSMUSG00000032125 ENSMUST00000215777 Robo4 protein_coding Interval_47392 chr13 83168591 83168788 + 0 NA intron (ENSMUSG00000114372.1, intron 3 of 3) lincRNA-intron (ENSMUSG00000114372.1, intron 3 of 3) 21020 ENSMUSG00000114735.1 ENSMUSG00000114735 ENSMUST00000224835 Gm48156 processed_pseudogene Interval_43408 chr13 30249664 30249863 + 0 NA Intergenic Intergenic 17910 ENSMUSG00000038732.15 ENSMUSG00000038732 ENSMUST00000222095 Mboat1 protein_coding Interval_58435 chr15 34506547 34507013 + 0 NA intron (ENSMUSG00000022325.14, intron 5 of 15) protein_coding-intron (ENSMUSG00000022325.14, intron 5 of 16) -7390 ENSMUSG00000022325.14 ENSMUSG00000022325 ENSMUST00000153061 Pop1 protein_coding Interval_149208 chr7 96283003 96283189 + 0 NA intron (ENSMUSG00000048078.16, intron 1 of 32) protein_coding-intron (ENSMUSG00000048078.16, intron 1 of 32) -22571 ENSMUSG00000099030.1 ENSMUSG00000099030 ENSMUST00000184738 Mir6394 miRNA Interval_167303 chr9 67169585 67169821 + 0 NA intron (ENSMUSG00000111556.1, intron 2 of 2) lincRNA-intron (ENSMUSG00000111556.1, intron 2 of 2) 36142 ENSMUSG00000111556.1 ENSMUSG00000111556 ENSMUST00000215724 Gm19299 lincRNA Interval_9914 chr1 164054460 164054927 + 0 NA exon (ENSMUSG00000026582.6, exon 11 of 14) protein_coding-exon (ENSMUSG00000026582.6, exon 11 of 14) 6459 ENSMUSG00000026582.6 ENSMUSG00000026582 ENSMUST00000027874 Sele protein_coding Interval_82747 chr18 76378647 76380808 + 0 NA Intergenic Intergenic 57903 ENSMUSG00000117816.1 ENSMUSG00000117816 ENSMUST00000235901 Gm50360 processed_pseudogene Interval_60402 chr15 73519233 73519829 + 0 NA intron (ENSMUSG00000036661.14, intron 1 of 2) protein_coding-intron (ENSMUSG00000036661.14, intron 1 of 22) 6859 ENSMUSG00000036661.14 ENSMUSG00000036661 ENSMUST00000160727 Dennd3 protein_coding Interval_80495 chr18 42753242 42754451 + 0 NA intron (ENSMUSG00000024500.20, intron 1 of 8) protein_coding-intron (ENSMUSG00000024500.20, intron 1 of 8) -131387 ENSMUSG00000117926.1 ENSMUSG00000117926 ENSMUST00000236808 C030004G16Rik lincRNA Interval_133308 chr5 151400323 151400537 + 0 NA intron (ENSMUSG00000097321.5, intron 1 of 2) lincRNA-intron (ENSMUSG00000054622.4, intron 1 of 1) 286 ENSMUSG00000097321.5 ENSMUSG00000097321 ENSMUST00000201853 1700028E10Rik processed_transcript Interval_103394 chr3 41175043 41175623 + 0 NA Intergenic Intergenic -2670 ENSMUSG00000105258.1 ENSMUSG00000105258 ENSMUST00000197878 Gm40038 lincRNA Interval_125320 chr5 66180320 66180903 + 0 NA intron (ENSMUSG00000107014.1, intron 1 of 2) antisense-intron (ENSMUSG00000107014.1, intron 1 of 2) -5268 ENSMUSG00000107069.1 ENSMUSG00000107069 ENSMUST00000202052 Gm43772 transcribed_processed_pseudogene Interval_103805 chr3 53112026 53112349 + 0 NA promoter-TSS (ENSMUSG00000104968.1) antisense-promoter-TSS (ENSMUSG00000104968.1) 21 ENSMUSG00000105971.1 ENSMUSG00000105971 ENSMUST00000198488 Gm43805 TEC Interval_26888 chr11 61309801 61310076 + 0 NA intron (ENSMUSG00000069855.9, intron 12 of 14) protein_coding-intron (ENSMUSG00000069855.9, intron 12 of 16) -24823 ENSMUSG00000064718.1 ENSMUSG00000064718 ENSMUST00000082784 Gm25929 snRNA Interval_19790 chr10 108928495 108928693 + 0 NA intron (ENSMUSG00000035864.14, intron 1 of 1) protein_coding-intron (ENSMUSG00000035864.14, intron 1 of 10) 27894 ENSMUSG00000112905.1 ENSMUSG00000112905 ENSMUST00000219940 Gm47477 TEC Interval_2309 chr1 37951254 37951581 + 0 NA exon (ENSMUSG00000087374.1, exon 4 of 6) antisense-exon (ENSMUSG00000087374.1, exon 4 of 6) -2418 ENSMUSG00000026085.11 ENSMUSG00000026085 ENSMUST00000114894 Lyg1 protein_coding Interval_98200 chr2 149787553 149787821 + 0 NA intron (ENSMUSG00000087029.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000087029.1, intron 1 of 1) 11014 ENSMUSG00000087029.1 ENSMUSG00000087029 ENSMUST00000139471 Gm14133 lincRNA Interval_43763 chr13 36196842 36197636 + 0 NA intron (ENSMUSG00000021420.13, intron 2 of 7) protein_coding-intron (ENSMUSG00000021420.13, intron 1 of 6) -7516 ENSMUSG00000114407.1 ENSMUSG00000114407 ENSMUST00000223888 Gm48765 antisense Interval_132824 chr5 148147027 148147325 + 0 NA intron (ENSMUSG00000029651.16, intron 2 of 3) protein_coding-intron (ENSMUSG00000029651.16, intron 4 of 14) 37201 ENSMUSG00000066554.6 ENSMUSG00000066554 ENSMUST00000150411 Gm10167 processed_pseudogene Interval_13585 chr10 19961923 19962152 + 0 NA intron (ENSMUSG00000071369.11, intron 1 of 3) protein_coding-intron (ENSMUSG00000071369.11, intron 1 of 29) -54386 ENSMUSG00000020003.16 ENSMUSG00000020003 ENSMUST00000214951 Pex7 protein_coding Interval_119799 chr4 140053771 140054486 + 0 NA intron (ENSMUSG00000040972.8, intron 4 of 9) protein_coding-intron (ENSMUSG00000040972.8, intron 4 of 9) -77749 ENSMUSG00000085968.1 ENSMUSG00000085968 ENSMUST00000135858 Gm13027 antisense Interval_67088 chr16 42806392 42807913 + 0 NA intron (ENSMUSG00000075070.6, intron 1 of 1) lincRNA-intron (ENSMUSG00000075070.6, intron 1 of 1) 68588 ENSMUSG00000075070.6 ENSMUSG00000075070 ENSMUST00000130331 4932412D23Rik lincRNA Interval_51036 chr14 21709340 21709747 + 0 NA intron (ENSMUSG00000063821.6, intron 1 of 3) protein_coding-intron (ENSMUSG00000063821.6, intron 1 of 3) -6441 ENSMUSG00000063821.6 ENSMUSG00000063821 ENSMUST00000224735 Dupd1 protein_coding Interval_105065 chr3 80913059 80914373 + 0 NA promoter-TSS (ENSMUSG00000028020.16) protein_coding-promoter-TSS (ENSMUSG00000028020.16) -1627 ENSMUSG00000028020.16 ENSMUSG00000028020 ENSMUST00000132330 Glrb protein_coding Interval_78603 chr18 15086107 15086311 + 0 NA intron (ENSMUSG00000036225.15, intron 1 of 4) protein_coding-intron (ENSMUSG00000036225.15, intron 1 of 4) -22111 ENSMUSG00000036225.15 ENSMUSG00000036225 ENSMUST00000234685 Kctd1 protein_coding Interval_139183 chr6 97010798 97011523 + 0 NA intron (ENSMUSG00000046500.8, intron 3 of 5) protein_coding-intron (ENSMUSG00000046500.8, intron 3 of 5) 49233 ENSMUSG00000046500.8 ENSMUSG00000046500 ENSMUST00000203930 Tafa4 protein_coding Interval_73984 chr17 45847908 45848770 + 0 NA Intergenic Intergenic -26016 ENSMUSG00000117139.1 ENSMUSG00000117139 ENSMUST00000233237 Gm35692 lincRNA Interval_151269 chr7 120565292 120565730 + 0 NA Intergenic Intergenic 12355 ENSMUSG00000109578.1 ENSMUSG00000109578 ENSMUST00000207306 Gm16475 transcribed_unprocessed_pseudogene Interval_152126 chr7 129697201 129697458 + 0 NA intron (ENSMUSG00000108580.1, intron 3 of 3) lincRNA-intron (ENSMUSG00000108580.1, intron 3 of 3) 29924 ENSMUSG00000108481.1 ENSMUSG00000108481 ENSMUST00000205836 Gm33248 sense_intronic Interval_76897 chr17 84819625 84821028 + 0 NA Intergenic Intergenic 19970 ENSMUSG00000117595.1 ENSMUSG00000117595 ENSMUST00000235108 Gm49981 lincRNA Interval_75465 chr17 66766138 66766514 + 0 NA intron (ENSMUSG00000033278.10, intron 6 of 6) protein_coding-intron (ENSMUSG00000033278.10, intron 19 of 32) -12555 ENSMUSG00000117174.1 ENSMUSG00000117174 ENSMUST00000233342 Gm49939 processed_pseudogene Interval_145448 chr7 34811313 34813269 + 0 NA intron (ENSMUSG00000060402.8, intron 1 of 2) protein_coding-intron (ENSMUSG00000060402.8, intron 1 of 3) -58479 ENSMUSG00000060402.8 ENSMUSG00000060402 ENSMUST00000205390 Chst8 protein_coding Interval_22445 chr11 10205214 10205885 + 0 NA Intergenic Intergenic -33788 ENSMUSG00000082312.1 ENSMUSG00000082312 ENSMUST00000117538 Gm11996 processed_pseudogene Interval_50066 chr14 7773421 7774372 + 0 NA exon (ENSMUSG00000084775.2, exon 3 of 3) lincRNA-exon (ENSMUSG00000084775.2, exon 3 of 3) -17559 ENSMUSG00000097169.2 ENSMUSG00000097169 ENSMUST00000181025 Gm26661 TEC Interval_19554 chr10 103110895 103111226 + 0 NA intron (ENSMUSG00000019892.13, intron 23 of 25) protein_coding-intron (ENSMUSG00000019892.13, intron 23 of 25) -10176 ENSMUSG00000077528.1 ENSMUSG00000077528 ENSMUST00000104340 Gm25376 snoRNA Interval_162086 chr8 124991049 124992052 + 0 NA Intergenic Intergenic -21499 ENSMUSG00000056820.7 ENSMUSG00000056820 ENSMUST00000212603 Tsnax protein_coding Interval_109448 chr3 142493384 142494378 + 0 NA promoter-TSS (ENSMUSG00000105504.4) protein_coding-promoter-TSS (ENSMUSG00000105504.4) -8915 ENSMUSG00000105504.4 ENSMUSG00000105504 ENSMUST00000199578 Gbp5 protein_coding Interval_95527 chr2 111444215 111444429 + 0 NA Intergenic Intergenic -4820 ENSMUSG00000095586.1 ENSMUSG00000095586 ENSMUST00000075390 Olfr1287 protein_coding Interval_149860 chr7 102047121 102047507 + 0 NA intron (ENSMUSG00000070426.12, intron 1 of 8) protein_coding-intron (ENSMUSG00000070426.12, intron 1 of 8) 17844 ENSMUSG00000070426.12 ENSMUSG00000070426 ENSMUST00000130074 Rnf121 protein_coding Interval_78737 chr18 19998261 19998698 + 0 NA intron (ENSMUSG00000059898.9, intron 1 of 15) protein_coding-intron (ENSMUSG00000059898.9, intron 1 of 16) 3476 ENSMUSG00000059898.9 ENSMUSG00000059898 ENSMUST00000223946 Dsc3 protein_coding Interval_64789 chr16 15820442 15820686 + 0 NA intron (ENSMUSG00000022672.8, intron 76 of 85) protein_coding-intron (ENSMUSG00000022672.8, intron 76 of 85) 42746 ENSMUSG00000022671.13 ENSMUSG00000022671 ENSMUST00000117136 Mzt2 protein_coding Interval_136841 chr6 61262123 61264328 + 0 NA intron (ENSMUSG00000039578.17, intron 1 of 1) protein_coding-intron (ENSMUSG00000039578.17, intron 1 of 10) -88700 ENSMUSG00000097924.2 ENSMUSG00000097924 ENSMUST00000181288 A730020E08Rik bidirectional_promoter_lncRNA Interval_20865 chr10 121604992 121606359 + 0 NA intron (ENSMUSG00000034667.8, intron 15 of 24) protein_coding-intron (ENSMUSG00000034667.8, intron 15 of 24) -4862 ENSMUSG00000034667.8 ENSMUSG00000034667 ENSMUST00000217865 Xpot protein_coding Interval_124909 chr5 60231265 60232037 + 0 NA exon (ENSMUSG00000087034.4, exon 1 of 1) processed_pseudogene-exon (ENSMUSG00000087034.4, exon 1 of 1) 168 ENSMUSG00000087034.4 ENSMUSG00000087034 ENSMUST00000117165 Cbfa2t2-ps1 processed_pseudogene Interval_114953 chr4 87569825 87571130 + 0 NA Intergenic Intergenic -10312 ENSMUSG00000082443.1 ENSMUSG00000082443 ENSMUST00000118382 Gm12604 processed_pseudogene Interval_42399 chr13 12680186 12682172 + 0 NA TTS (ENSMUSG00000113996.1) processed_pseudogene-TTS (ENSMUSG00000113996.1) -1110 ENSMUSG00000113148.1 ENSMUSG00000113148 ENSMUST00000222021 Gm48456 processed_pseudogene Interval_98281 chr2 150777926 150778701 + 0 NA Intergenic Intergenic 29232 ENSMUSG00000033068.16 ENSMUSG00000033068 ENSMUST00000139723 Entpd6 protein_coding Interval_158401 chr8 83453753 83454325 + 0 NA intron (ENSMUSG00000063253.11, intron 1 of 1) protein_coding-intron (ENSMUSG00000063253.11, intron 1 of 3) -16212 ENSMUSG00000063253.11 ENSMUSG00000063253 ENSMUST00000212849 Scoc protein_coding Interval_165324 chr9 46306551 46306782 + 0 NA intron (ENSMUSG00000056617.12, intron 5 of 8) protein_coding-intron (ENSMUSG00000056617.12, intron 8 of 12) 4921 ENSMUSG00000056617.12 ENSMUSG00000056617 ENSMUST00000160795 4931429L15Rik protein_coding Interval_159837 chr8 104218725 104220684 + 0 NA promoter-TSS (ENSMUSG00000110638.1) TEC-promoter-TSS (ENSMUSG00000110638.1) -908 ENSMUSG00000110638.1 ENSMUSG00000110638 ENSMUST00000212672 Gm45887 TEC Interval_45919 chr13 59292818 59293449 + 0 NA Intergenic Intergenic 37110 ENSMUSG00000114240.1 ENSMUSG00000114240 ENSMUST00000224237 Gm47360 lincRNA Interval_146196 chr7 44638527 44639404 + 0 NA exon (ENSMUSG00000030739.18, exon 14 of 42) protein_coding-exon (ENSMUSG00000030739.18, exon 14 of 42) -6180 ENSMUSG00000030739.18 ENSMUSG00000030739 ENSMUST00000208131 Myh14 protein_coding Interval_149688 chr7 100658047 100658551 + 0 NA promoter-TSS (ENSMUSG00000030701.17) protein_coding-promoter-TSS (ENSMUSG00000030701.17) 4057 ENSMUSG00000030701.17 ENSMUSG00000030701 ENSMUST00000208812 Plekhb1 protein_coding Interval_35662 chr12 27082122 27084226 + 0 NA intron (ENSMUSG00000094002.3, intron 2 of 4) lincRNA-intron (ENSMUSG00000094002.3, intron 3 of 3) 77329 ENSMUSG00000094002.3 ENSMUSG00000094002 ENSMUST00000183238 Gm9866 lincRNA Interval_163533 chr9 21943393 21944796 + 0 NA intron (ENSMUSG00000040563.13, intron 5 of 8) protein_coding-intron (ENSMUSG00000040563.13, intron 6 of 9) 5820 ENSMUSG00000040563.13 ENSMUSG00000040563 ENSMUST00000188468 Plppr2 protein_coding Interval_13171 chr10 12791827 12792434 + 0 NA intron (ENSMUSG00000019820.11, intron 2 of 17) protein_coding-intron (ENSMUSG00000019820.11, intron 1 of 73) 1844 ENSMUSG00000088516.1 ENSMUSG00000088516 ENSMUST00000157891 Gm23044 snRNA Interval_32513 chr11 108032525 108032715 + 0 NA intron (ENSMUSG00000050965.14, intron 5 of 16) protein_coding-intron (ENSMUSG00000050965.14, intron 5 of 16) -19815 ENSMUSG00000050965.14 ENSMUSG00000050965 ENSMUST00000134725 Prkca protein_coding Interval_147725 chr7 73037657 73037888 + 0 NA Intergenic Intergenic -47619 ENSMUSG00000098035.1 ENSMUSG00000098035 ENSMUST00000182995 Gm5335 processed_pseudogene Interval_81729 chr18 63984215 63984741 + 0 NA intron (ENSMUSG00000040560.10, intron 26 of 26) protein_coding-intron (ENSMUSG00000040560.10, intron 27 of 27) -75322 ENSMUSG00000084642.1 ENSMUSG00000084642 ENSMUST00000122693 Gm24384 snRNA Interval_157584 chr8 71542478 71543526 + 0 NA promoter-TSS (ENSMUSG00000031813.8) protein_coding-promoter-TSS (ENSMUSG00000031813.8) 80 ENSMUSG00000031813.8 ENSMUSG00000031813 ENSMUST00000212336 Mvb12a protein_coding Interval_75060 chr17 62721501 62721712 + 0 NA intron (ENSMUSG00000048915.12, intron 1 of 3) protein_coding-intron (ENSMUSG00000048915.12, intron 1 of 4) 159538 ENSMUSG00000048915.12 ENSMUSG00000048915 ENSMUST00000078839 Efna5 protein_coding Interval_138945 chr6 93704140 93705015 + 0 NA intron (ENSMUSG00000045095.16, intron 14 of 24) protein_coding-intron (ENSMUSG00000045095.16, intron 13 of 21) -54352 ENSMUSG00000107739.1 ENSMUSG00000107739 ENSMUST00000203479 Gm7812 processed_pseudogene Interval_130227 chr5 125080918 125082246 + 0 NA intron (ENSMUSG00000029478.16, intron 12 of 47) protein_coding-intron (ENSMUSG00000029478.16, intron 11 of 45) -5259 ENSMUSG00000106663.1 ENSMUSG00000106663 ENSMUST00000198978 Gm42839 antisense Interval_38542 chr12 80007718 80008112 + 0 NA Intergenic Intergenic -28064 ENSMUSG00000112292.1 ENSMUSG00000112292 ENSMUST00000219732 Gm8275 processed_pseudogene Interval_143899 chr7 17027015 17028378 + 0 NA promoter-TSS (ENSMUSG00000003099.11) protein_coding-promoter-TSS (ENSMUSG00000003099.11) 198 ENSMUSG00000003099.11 ENSMUSG00000003099 ENSMUST00000145997 Ppp5c protein_coding Interval_119581 chr4 138490568 138491589 + 0 NA Intergenic Intergenic 36764 ENSMUSG00000046447.3 ENSMUSG00000046447 ENSMUST00000050918 Camk2n1 protein_coding Interval_54180 chr14 66021475 66022523 + 0 NA Intergenic Intergenic -12792 ENSMUSG00000034450.8 ENSMUSG00000034450 ENSMUST00000059970 Gulo protein_coding Interval_122246 chr5 20648225 20648467 + 0 NA intron (ENSMUSG00000040003.18, intron 15 of 15) protein_coding-intron (ENSMUSG00000040003.18, intron 20 of 22) -53931 ENSMUSG00000073174.6 ENSMUSG00000073174 ENSMUST00000189302 Gm29254 3prime_overlapping_ncRNA Interval_75222 chr17 64892252 64892691 + 0 NA Intergenic Intergenic 16270 ENSMUSG00000117203.1 ENSMUSG00000117203 ENSMUST00000233516 Gm4701 processed_pseudogene Interval_78655 chr18 16477801 16478885 + 0 NA Intergenic Intergenic -203399 ENSMUSG00000063628.2 ENSMUSG00000063628 ENSMUST00000076710 Gm7665 processed_pseudogene Interval_87077 chr19 45997932 45998863 + 0 NA promoter-TSS (ENSMUSG00000039901.10) protein_coding-promoter-TSS (ENSMUSG00000039901.10) 192 ENSMUSG00000097690.2 ENSMUSG00000097690 ENSMUST00000236194 4930505N22Rik bidirectional_promoter_lncRNA Interval_171042 chr9 113930454 113932040 + 0 NA promoter-TSS (ENSMUSG00000009741.15) protein_coding-promoter-TSS (ENSMUSG00000009741.15) -382 ENSMUSG00000009741.15 ENSMUSG00000009741 ENSMUST00000216293 Ubp1 protein_coding Interval_92542 chr2 60440837 60441116 + 0 NA TTS (ENSMUSG00000054580.14) protein_coding-TTS (ENSMUSG00000054580.14) 29451 ENSMUSG00000087283.1 ENSMUSG00000087283 ENSMUST00000131457 Gm13580 antisense Interval_172150 chrX 8020005 8020906 + 0 NA Intergenic Intergenic -1963 ENSMUSG00000031163.2 ENSMUSG00000031163 ENSMUST00000033503 Glod5 protein_coding Interval_77237 chr17 87517402 87517660 + 0 NA Intergenic Intergenic 13213 ENSMUSG00000117361.1 ENSMUSG00000117361 ENSMUST00000234692 Gm30984 lincRNA Interval_99190 chr2 157918688 157919043 + 0 NA intron (ENSMUSG00000037843.6, intron 1 of 3) protein_coding-intron (ENSMUSG00000037843.6, intron 1 of 3) 4212 ENSMUSG00000037843.6 ENSMUSG00000037843 ENSMUST00000109523 Vstm2l protein_coding Interval_33555 chr11 117185760 117185966 + 0 NA Intergenic Intergenic 30794 ENSMUSG00000020823.16 ENSMUSG00000020823 ENSMUST00000153437 Sec14l1 protein_coding Interval_156229 chr8 46271201 46271451 + 0 NA promoter-TSS (ENSMUSG00000089561.1) snRNA-promoter-TSS (ENSMUSG00000089561.1) -725 ENSMUSG00000089561.1 ENSMUSG00000089561 ENSMUST00000158936 Gm24669 snRNA Interval_95935 chr2 118545672 118546136 + 0 NA promoter-TSS (ENSMUSG00000040093.16) protein_coding-promoter-TSS (ENSMUSG00000040093.16) -588 ENSMUSG00000040093.16 ENSMUSG00000040093 ENSMUST00000138342 Bmf protein_coding Interval_170618 chr9 109563160 109563665 + 0 NA intron (ENSMUSG00000074060.10, intron 3 of 5) protein_coding-intron (ENSMUSG00000074060.10, intron 4 of 9) 4838 ENSMUSG00000074060.10 ENSMUSG00000074060 ENSMUST00000198112 Fbxw15 protein_coding Interval_89652 chr2 24025778 24026172 + 0 NA intron (ENSMUSG00000026986.14, intron 3 of 6) protein_coding-intron (ENSMUSG00000026986.14, intron 3 of 6) 23104 ENSMUSG00000026986.14 ENSMUSG00000026986 ENSMUST00000114497 Hnmt protein_coding Interval_86634 chr19 42182406 42183560 + 0 NA promoter-TSS (ENSMUSG00000018820.13) protein_coding-promoter-TSS (ENSMUSG00000018820.13) -2626 ENSMUSG00000018820.13 ENSMUSG00000018820 ENSMUST00000170184 Zfyve27 protein_coding Interval_65780 chr16 28813216 28813912 + 0 NA Intergenic Intergenic 22803 ENSMUSG00000051065.9 ENSMUSG00000051065 ENSMUST00000232571 Mb21d2 protein_coding Interval_140487 chr6 118732773 118733384 + 0 NA intron (ENSMUSG00000051331.16, intron 6 of 44) protein_coding-intron (ENSMUSG00000051331.16, intron 9 of 46) -101822 ENSMUSG00000089115.1 ENSMUSG00000089115 ENSMUST00000158490 Gm25905 snRNA Interval_95736 chr2 115520309 115520927 + 0 NA intron (ENSMUSG00000085582.7, intron 1 of 3) lincRNA-intron (ENSMUSG00000085582.7, intron 1 of 3) 7126 ENSMUSG00000085582.7 ENSMUSG00000085582 ENSMUST00000125147 3110099E03Rik lincRNA Interval_15280 chr10 44060291 44061394 + 0 NA intron (ENSMUSG00000019866.15, intron 2 of 21) protein_coding-intron (ENSMUSG00000019866.15, intron 2 of 21) -2064 ENSMUSG00000019866.15 ENSMUSG00000019866 ENSMUST00000239010 Crybg1 protein_coding Interval_89013 chr2 14517969 14518904 + 0 NA intron (ENSMUSG00000084901.6, intron 3 of 3) processed_transcript-intron (ENSMUSG00000084901.6, intron 3 of 4) 5837 ENSMUSG00000084901.6 ENSMUSG00000084901 ENSMUST00000193364 Gm13266 processed_transcript Interval_9766 chr1 161962565 161963383 + 0 NA intron (ENSMUSG00000086277.2, intron 3 of 6) protein_coding-intron (ENSMUSG00000086277.2, intron 3 of 6) -6226 ENSMUSG00000103393.1 ENSMUSG00000103393 ENSMUST00000161826 Gm38304 antisense Interval_34110 chr11 120695181 120695689 + 0 NA intron (ENSMUSG00000025142.18, intron 1 of 5) protein_coding-intron (ENSMUSG00000025142.18, intron 7 of 15) -13423 ENSMUSG00000025142.18 ENSMUSG00000025142 ENSMUST00000172392 Aspscr1 protein_coding Interval_111462 chr4 21822354 21822964 + 0 NA intron (ENSMUSG00000040455.17, intron 8 of 12) protein_coding-intron (ENSMUSG00000040455.17, intron 12 of 16) -25389 ENSMUSG00000028248.15 ENSMUSG00000028248 ENSMUST00000133241 Pnisr protein_coding Interval_149514 chr7 99277889 99278471 + 0 NA intron (ENSMUSG00000055407.14, intron 1 of 3) protein_coding-intron (ENSMUSG00000055407.14, intron 1 of 3) 9048 ENSMUSG00000055407.14 ENSMUSG00000055407 ENSMUST00000209094 Map6 protein_coding Interval_61301 chr15 80697748 80698149 + 0 NA promoter-TSS (ENSMUSG00000116220.1) antisense-promoter-TSS (ENSMUSG00000116220.1) -338 ENSMUSG00000116220.1 ENSMUSG00000116220 ENSMUST00000230325 A430088P11Rik antisense Interval_27595 chr11 68946863 68947929 + 0 NA promoter-TSS (ENSMUSG00000052921.13) protein_coding-promoter-TSS (ENSMUSG00000052921.13) 429 ENSMUSG00000052921.13 ENSMUSG00000052921 ENSMUST00000108670 Arhgef15 protein_coding Interval_109222 chr3 137990941 137992598 + 0 NA Intergenic Intergenic -9170 ENSMUSG00000105296.1 ENSMUSG00000105296 ENSMUST00000199386 Gm19708 lincRNA Interval_26800 chr11 60698929 60700444 + 0 NA promoter-TSS (ENSMUSG00000020536.12) protein_coding-promoter-TSS (ENSMUSG00000020536.12) -4511 ENSMUSG00000020536.12 ENSMUSG00000020536 ENSMUST00000128749 Llgl1 protein_coding Interval_124140 chr5 38632264 38633285 + 0 NA Intergenic Intergenic 52052 ENSMUSG00000046572.10 ENSMUSG00000046572 ENSMUST00000178760 Zfp518b protein_coding Interval_77483 chr17 89767177 89767412 + 0 NA Intergenic Intergenic -14768 ENSMUSG00000117511.1 ENSMUSG00000117511 ENSMUST00000234973 Gm50061 lincRNA Interval_66579 chr16 35294207 35295096 + 0 NA intron (ENSMUSG00000022840.9, intron 17 of 20) protein_coding-intron (ENSMUSG00000022840.9, intron 17 of 20) 9897 ENSMUSG00000116766.1 ENSMUSG00000116766 ENSMUST00000231960 Gm49702 TEC Interval_4586 chr1 75262855 75264526 + 0 NA intron (ENSMUSG00000026204.15, intron 1 of 4) protein_coding-intron (ENSMUSG00000026204.15, intron 1 of 22) 360 ENSMUSG00000026204.15 ENSMUSG00000026204 ENSMUST00000188401 Ptprn protein_coding Interval_15411 chr10 45664173 45664551 + 0 NA intron (ENSMUSG00000038822.15, intron 11 of 23) protein_coding-intron (ENSMUSG00000038822.15, intron 11 of 23) 7407 ENSMUSG00000111491.1 ENSMUSG00000111491 ENSMUST00000215636 Gm47503 TEC Interval_93714 chr2 76064001 76064726 + 0 NA intron (ENSMUSG00000075270.11, intron 9 of 14) protein_coding-intron (ENSMUSG00000075270.11, intron 12 of 19) -82396 ENSMUSG00000075271.4 ENSMUSG00000075271 ENSMUST00000099994 Ttc30a1 protein_coding Interval_163938 chr9 29382225 29382402 + 0 NA intron (ENSMUSG00000059974.10, intron 2 of 2) protein_coding-intron (ENSMUSG00000059974.10, intron 2 of 7) 210197 ENSMUSG00000085638.1 ENSMUSG00000085638 ENSMUST00000141752 Gm15521 sense_intronic Interval_134618 chr6 29997930 29999246 + 0 NA Intergenic Intergenic 10200 ENSMUSG00000095989.1 ENSMUSG00000095989 ENSMUST00000178068 Gm23049 miRNA Interval_87796 chr19 55920113 55920336 + 0 NA TTS (ENSMUSG00000024985.20) protein_coding-TTS (ENSMUSG00000024985.20) 78552 ENSMUSG00000099746.1 ENSMUSG00000099746 ENSMUST00000190974 Ppnr sense_intronic Interval_10702 chr1 173355724 173356033 + 0 NA intron (ENSMUSG00000037860.15, intron 1 of 11) protein_coding-intron (ENSMUSG00000005338.13, intron 1 of 9) 11770 ENSMUSG00000005338.13 ENSMUSG00000005338 ENSMUST00000126963 Cadm3 protein_coding Interval_115451 chr4 99053043 99053578 + 0 NA intron (ENSMUSG00000028556.15, intron 14 of 47) protein_coding-intron (ENSMUSG00000028556.15, intron 14 of 48) 13801 ENSMUSG00000028556.15 ENSMUSG00000028556 ENSMUST00000206604 Dock7 protein_coding Interval_131745 chr5 139605824 139606276 + 0 NA Intergenic Intergenic 62152 ENSMUSG00000029546.12 ENSMUSG00000029546 ENSMUST00000174792 Uncx protein_coding Interval_149240 chr7 96563449 96564630 + 0 NA intron (ENSMUSG00000048078.16, intron 5 of 32) protein_coding-intron (ENSMUSG00000048078.16, intron 6 of 32) 65030 ENSMUSG00000085792.2 ENSMUSG00000085792 ENSMUST00000155217 Gm15414 antisense Interval_149478 chr7 98930917 98931643 + 0 NA intron (ENSMUSG00000035354.9, intron 8 of 10) protein_coding-intron (ENSMUSG00000035354.9, intron 13 of 14) -4614 ENSMUSG00000089501.1 ENSMUSG00000089501 ENSMUST00000158876 Gm23479 snoRNA Interval_151899 chr7 127406203 127407250 + 0 NA promoter-TSS (ENSMUSG00000045757.6) protein_coding-promoter-TSS (ENSMUSG00000045757.6) 57 ENSMUSG00000045757.6 ENSMUSG00000045757 ENSMUST00000139118 Zfp764 protein_coding Interval_71684 chr17 25405467 25406488 + 0 NA intron (ENSMUSG00000024112.16, intron 2 of 8) protein_coding-intron (ENSMUSG00000024112.16, intron 2 of 34) -16505 ENSMUSG00000024112.16 ENSMUSG00000024112 ENSMUST00000159052 Cacna1h protein_coding Interval_120913 chr4 151538411 151540495 + 0 NA intron (ENSMUSG00000014592.21, intron 5 of 7) protein_coding-intron (ENSMUSG00000014592.21, intron 4 of 23) 162983 ENSMUSG00000085593.1 ENSMUSG00000085593 ENSMUST00000129097 4930589P08Rik antisense Interval_90974 chr2 33863832 33864601 + 0 NA intron (ENSMUSG00000038740.9, intron 2 of 7) protein_coding-intron (ENSMUSG00000038740.9, intron 2 of 9) 51259 ENSMUSG00000089596.1 ENSMUSG00000089596 ENSMUST00000158971 Nron misc_RNA Interval_1978 chr1 35391723 35392661 + 0 NA Intergenic Intergenic -213108 ENSMUSG00000077231.1 ENSMUSG00000077231 ENSMUST00000104043 Gm25096 snoRNA Interval_168100 chr9 76444922 76445519 + 0 NA Intergenic Intergenic -121364 ENSMUSG00000032360.16 ENSMUSG00000032360 ENSMUST00000184200 Hcrtr2 protein_coding Interval_24319 chr11 32331689 32332395 + 0 NA Intergenic Intergenic -15778 ENSMUSG00000040711.8 ENSMUSG00000040711 ENSMUST00000138771 Sh3pxd2b protein_coding Interval_145258 chr7 31006035 31006467 + 0 NA Intergenic Intergenic 31687 ENSMUSG00000009687.14 ENSMUSG00000009687 ENSMUST00000161259 Fxyd5 protein_coding Interval_851 chr1 12668121 12669074 + 0 NA exon (ENSMUSG00000097171.1, exon 1 of 3) lincRNA-exon (ENSMUSG00000097171.1, exon 1 of 3) 1034 ENSMUSG00000097171.1 ENSMUSG00000097171 ENSMUST00000181272 Gm17644 lincRNA Interval_13549 chr10 19404000 19404782 + 0 NA Intergenic Intergenic 47858 ENSMUSG00000045591.6 ENSMUSG00000045591 ENSMUST00000053225 Olig3 protein_coding Interval_65424 chr16 22252264 22252890 + 0 NA promoter-TSS (ENSMUSG00000022858.16) protein_coding-promoter-TSS (ENSMUSG00000022858.16) 8409 ENSMUSG00000116761.1 ENSMUSG00000116761 ENSMUST00000232582 Gm36796 processed_pseudogene Interval_109472 chr3 142757518 142757852 + 0 NA Intergenic Intergenic -7538 ENSMUSG00000028271.9 ENSMUSG00000028271 ENSMUST00000196311 Gtf2b protein_coding Interval_22871 chr11 16950807 16951808 + 0 NA promoter-TSS (ENSMUSG00000044966.4) protein_coding-promoter-TSS (ENSMUSG00000044966.4) -68 ENSMUSG00000044966.4 ENSMUSG00000044966 ENSMUST00000061327 Fbxo48 protein_coding Interval_88528 chr2 5851469 5853363 + 0 NA intron (ENSMUSG00000025817.12, intron 1 of 3) protein_coding-intron (ENSMUSG00000025817.12, intron 1 of 9) 7126 ENSMUSG00000025817.12 ENSMUSG00000025817 ENSMUST00000128604 Nudt5 protein_coding Interval_95962 chr2 118702312 118704503 + 0 NA exon (ENSMUSG00000078137.1, exon 1 of 1) protein_coding-exon (ENSMUSG00000078137.1, exon 1 of 1) 556 ENSMUSG00000078137.1 ENSMUSG00000078137 ENSMUST00000104937 Ankrd63 protein_coding Interval_167785 chr9 72693161 72694029 + 0 NA exon (ENSMUSG00000102573.1, exon 1 of 1) TEC-exon (ENSMUSG00000102573.1, exon 1 of 1) 2046 ENSMUSG00000102573.1 ENSMUSG00000102573 ENSMUST00000192735 Gm7265 TEC Interval_104878 chr3 77427683 77427933 + 0 NA Intergenic Intergenic 136062 ENSMUSG00000102489.1 ENSMUSG00000102489 ENSMUST00000192011 Dnmt3a-ps1 processed_pseudogene Interval_105080 chr3 81039381 81039650 + 0 NA intron (ENSMUSG00000085106.1, intron 1 of 1) protein_coding-intron (ENSMUSG00000028019.9, intron 1 of 5) 922 ENSMUSG00000085106.1 ENSMUSG00000085106 ENSMUST00000146657 Gm16000 antisense Interval_79624 chr18 34062080 34062835 + 0 NA Intergenic Intergenic -9423 ENSMUSG00000117961.1 ENSMUSG00000117961 ENSMUST00000235466 Gm50265 lincRNA Interval_111595 chr4 24269759 24269986 + 0 NA Intergenic Intergenic 31772 ENSMUSG00000083154.1 ENSMUSG00000083154 ENSMUST00000117711 Gm11892 processed_pseudogene Interval_110577 chr4 4137835 4140389 + 0 NA promoter-TSS (ENSMUSG00000045573.9) protein_coding-promoter-TSS (ENSMUSG00000045573.9) -293 ENSMUSG00000045573.9 ENSMUSG00000045573 ENSMUST00000133567 Penk protein_coding Interval_168411 chr9 80119075 80119838 + 0 NA TTS (ENSMUSG00000034252.14) protein_coding-TTS (ENSMUSG00000034252.14) 2481 ENSMUSG00000084917.3 ENSMUSG00000084917 ENSMUST00000165458 Gm17477 antisense Interval_13999 chr10 25381911 25384224 + 0 NA intron (ENSMUSG00000019978.16, intron 1 of 17) protein_coding-intron (ENSMUSG00000019978.16, intron 1 of 19) 33118 ENSMUSG00000112445.1 ENSMUSG00000112445 ENSMUST00000219193 Gm47830 processed_pseudogene Interval_96549 chr2 125587356 125588225 + 0 NA intron (ENSMUSG00000068394.4, intron 16 of 27) protein_coding-intron (ENSMUSG00000068394.4, intron 16 of 27) 37323 ENSMUSG00000068394.4 ENSMUSG00000068394 ENSMUST00000089776 Cep152 protein_coding Interval_50363 chr14 12067156 12067347 + 0 NA intron (ENSMUSG00000021745.14, intron 5 of 29) protein_coding-intron (ENSMUSG00000021745.14, intron 5 of 29) 85333 ENSMUSG00000114246.1 ENSMUSG00000114246 ENSMUST00000225204 Gm48603 TEC Interval_148372 chr7 80838321 80838654 + 0 NA Intergenic Intergenic -22464 ENSMUSG00000038797.13 ENSMUSG00000038797 ENSMUST00000155128 Zscan2 protein_coding Interval_71495 chr17 24151400 24152743 + 0 NA Intergenic Intergenic -5025 ENSMUSG00000117557.1 ENSMUSG00000117557 ENSMUST00000234329 Gm50070 sense_intronic Interval_107531 chr3 108324587 108324778 + 0 NA exon (ENSMUSG00000068747.14, exon 4 of 20) protein_coding-exon (ENSMUSG00000068747.14, exon 4 of 20) 36801 ENSMUSG00000105358.1 ENSMUSG00000105358 ENSMUST00000198943 Gm43099 TEC Interval_33576 chr11 117313124 117313623 + 0 NA intron (ENSMUSG00000059248.13, intron 1 of 2) protein_coding-intron (ENSMUSG00000059248.13, intron 2 of 10) -19055 ENSMUSG00000059248.13 ENSMUSG00000059248 ENSMUST00000129387 Septin9 protein_coding Interval_76065 chr17 74669740 74670593 + 0 NA promoter-TSS (ENSMUSG00000024073.16) protein_coding-promoter-TSS (ENSMUSG00000024073.16) 34444 ENSMUSG00000024073.16 ENSMUSG00000024073 ENSMUST00000182157 Birc6 protein_coding Interval_141212 chr6 125624386 125624738 + 0 NA exon (ENSMUSG00000001930.17, exon 19 of 52) protein_coding-exon (ENSMUSG00000001930.17, exon 19 of 52) 71599 ENSMUSG00000001930.17 ENSMUSG00000001930 ENSMUST00000146264 Vwf protein_coding Interval_113159 chr4 48690092 48692254 + 0 NA Intergenic Intergenic 16017 ENSMUSG00000080850.1 ENSMUSG00000080850 ENSMUST00000117162 Gm12439 processed_pseudogene Interval_22045 chr11 5979173 5979743 + 0 NA intron (ENSMUSG00000057897.14, intron 17 of 23) protein_coding-intron (ENSMUSG00000057897.14, intron 15 of 18) 4680 ENSMUSG00000057897.14 ENSMUSG00000057897 ENSMUST00000129098 Camk2b protein_coding Interval_109600 chr3 144985406 144987121 + 0 NA Intergenic Intergenic -11218 ENSMUSG00000068547.7 ENSMUSG00000068547 ENSMUST00000238960 Clca4a protein_coding Interval_93473 chr2 73348131 73349000 + 0 NA intron (ENSMUSG00000041762.16, intron 5 of 6) protein_coding-intron (ENSMUSG00000041762.16, intron 15 of 16) -8703 ENSMUSG00000085519.1 ENSMUSG00000085519 ENSMUST00000150705 Gm13703 antisense Interval_144124 chr7 19537709 19538677 + 0 NA intron (ENSMUSG00000051403.9, intron 1 of 12) protein_coding-intron (ENSMUSG00000051403.9, intron 1 of 12) -5211 ENSMUSG00000051403.9 ENSMUSG00000051403 ENSMUST00000208678 Ppp1r37 protein_coding Interval_116053 chr4 107280462 107281345 + 0 NA TTS (ENSMUSG00000063172.13) protein_coding-TTS (ENSMUSG00000063172.13) 10469 ENSMUSG00000082941.1 ENSMUSG00000082941 ENSMUST00000119210 Gm12850 processed_pseudogene Interval_4837 chr1 80150503 80151641 + 0 NA Intergenic Intergenic -2271 ENSMUSG00000102518.1 ENSMUSG00000102518 ENSMUST00000195479 Gm38339 TEC Interval_133767 chr6 11938458 11939193 + 0 NA intron (ENSMUSG00000029629.17, intron 3 of 17) protein_coding-intron (ENSMUSG00000029629.17, intron 3 of 15) -31342 ENSMUSG00000029632.7 ENSMUSG00000029632 ENSMUST00000204714 Ndufa4 protein_coding Interval_140076 chr6 113860591 113862322 + 0 NA intron (ENSMUSG00000030302.16, intron 3 of 3) protein_coding-intron (ENSMUSG00000030302.16, intron 1 of 19) 30083 ENSMUSG00000030302.16 ENSMUSG00000030302 ENSMUST00000154738 Atp2b2 protein_coding Interval_139521 chr6 100758025 100759410 + 0 NA intron (ENSMUSG00000030074.9, intron 3 of 6) protein_coding-intron (ENSMUSG00000030074.9, intron 3 of 6) 32483 ENSMUSG00000084157.2 ENSMUSG00000084157 ENSMUST00000117806 Gm15576 processed_pseudogene Interval_121588 chr5 3647055 3648406 + 0 NA promoter-TSS (ENSMUSG00000007415.15) protein_coding-promoter-TSS (ENSMUSG00000007415.15) -3451 ENSMUSG00000014529.9 ENSMUSG00000014529 ENSMUST00000156117 Tmbim7 protein_coding Interval_131943 chr5 140957171 140957747 + 0 NA intron (ENSMUSG00000036526.8, intron 1 of 2) protein_coding-intron (ENSMUSG00000036526.8, intron 1 of 24) 43012 ENSMUSG00000036526.8 ENSMUSG00000036526 ENSMUST00000199091 Card11 protein_coding Interval_71611 chr17 24856185 24856388 + 0 NA intron (ENSMUSG00000024158.17, intron 3 of 7) protein_coding-intron (ENSMUSG00000024158.17, intron 3 of 8) 5707 ENSMUSG00000024158.17 ENSMUSG00000024158 ENSMUST00000163132 Hagh protein_coding Interval_85217 chr19 23892697 23894179 + 0 NA exon (ENSMUSG00000024897.9, exon 2 of 13) protein_coding-exon (ENSMUSG00000024897.9, exon 2 of 13) -11019 ENSMUSG00000024897.9 ENSMUSG00000024897 ENSMUST00000237688 Apba1 protein_coding Interval_11827 chr1 185991798 185992014 + 0 NA Intergenic Intergenic -113021 ENSMUSG00000102546.1 ENSMUSG00000102546 ENSMUST00000194568 Gm9722 processed_pseudogene Interval_168035 chr9 75521690 75522937 + 0 NA intron (ENSMUSG00000058587.9, intron 3 of 3) protein_coding-intron (ENSMUSG00000058587.9, intron 3 of 9) -1811 ENSMUSG00000111228.1 ENSMUSG00000111228 ENSMUST00000215151 Gm48789 processed_pseudogene Interval_135458 chr6 39433319 39435314 + 0 NA Intergenic Intergenic -11897 ENSMUSG00000064900.1 ENSMUSG00000064900 ENSMUST00000082966 Gm25402 snoRNA Interval_75415 chr17 66446584 66446808 + 0 NA intron (ENSMUSG00000052105.17, intron 1 of 3) protein_coding-intron (ENSMUSG00000052105.17, intron 1 of 13) -3158 ENSMUSG00000117003.1 ENSMUSG00000117003 ENSMUST00000233518 Gm49937 bidirectional_promoter_lncRNA Interval_163134 chr9 15544371 15545910 + 0 NA exon (ENSMUSG00000058173.12, exon 3 of 3) protein_coding-exon (ENSMUSG00000058173.12, exon 3 of 3) 51708 ENSMUSG00000058173.12 ENSMUSG00000058173 ENSMUST00000178999 Smco4 protein_coding Interval_79427 chr18 31839055 31839430 + 0 NA intron (ENSMUSG00000024400.16, intron 7 of 21) protein_coding-intron (ENSMUSG00000024400.16, intron 7 of 21) -18723 ENSMUSG00000091561.3 ENSMUSG00000091561 ENSMUST00000165131 Gm6665 processed_pseudogene Interval_157891 chr8 75249797 75250124 + 0 NA Intergenic Intergenic 25704 ENSMUSG00000110515.1 ENSMUSG00000110515 ENSMUST00000212828 Gm9644 processed_pseudogene Interval_148981 chr7 90686612 90686864 + 0 NA intron (ENSMUSG00000052572.19, intron 3 of 27) protein_coding-intron (ENSMUSG00000052572.19, intron 3 of 27) 125423 ENSMUSG00000109074.1 ENSMUSG00000109074 ENSMUST00000209013 Gm45162 processed_pseudogene Interval_119198 chr4 136146523 136148552 + 0 NA Intergenic Intergenic 3673 ENSMUSG00000007872.3 ENSMUSG00000007872 ENSMUST00000133946 Id3 protein_coding Interval_4907 chr1 82298410 82298833 + 0 NA Intergenic Intergenic -7205 ENSMUSG00000055980.2 ENSMUSG00000055980 ENSMUST00000069799 Irs1 protein_coding Interval_108201 chr3 122457798 122459011 + 0 NA intron (ENSMUSG00000028121.8, intron 3 of 11) protein_coding-intron (ENSMUSG00000028121.8, intron 3 of 11) 656 ENSMUSG00000104574.1 ENSMUSG00000104574 ENSMUST00000197198 Gm42836 antisense Interval_4518 chr1 74763247 74763965 + 0 NA Intergenic Intergenic -1192 ENSMUSG00000098351.1 ENSMUSG00000098351 ENSMUST00000184199 Gm27507 misc_RNA Interval_77995 chr18 6510343 6511034 + 0 NA intron (ENSMUSG00000024240.13, intron 1 of 13) protein_coding-intron (ENSMUSG00000024240.13, intron 1 of 13) -20042 ENSMUSG00000084514.1 ENSMUSG00000084514 ENSMUST00000122565 Mir1893 miRNA Interval_3424 chr1 58240412 58241601 + 0 NA intron (ENSMUSG00000038242.12, intron 1 of 1) protein_coding-intron (ENSMUSG00000038242.12, intron 15 of 34) 29788 ENSMUSG00000038242.12 ENSMUSG00000038242 ENSMUST00000161926 Aox4 protein_coding Interval_94071 chr2 83652312 83653135 + 0 NA intron (ENSMUSG00000027091.14, intron 1 of 1) protein_coding-intron (ENSMUSG00000027091.14, intron 1 of 9) -3897 ENSMUSG00000027091.14 ENSMUSG00000027091 ENSMUST00000134789 Zc3h15 protein_coding Interval_76207 chr17 77232206 77233276 + 0 NA Intergenic Intergenic 130469 ENSMUSG00000117578.1 ENSMUSG00000117578 ENSMUST00000234215 Rpsa-ps8 processed_pseudogene Interval_137634 chr6 76974129 76974584 + 0 NA intron (ENSMUSG00000063063.12, intron 4 of 7) protein_coding-intron (ENSMUSG00000063063.12, intron 11 of 17) 169587 ENSMUSG00000063063.12 ENSMUSG00000063063 ENSMUST00000160252 Ctnna2 protein_coding Interval_71310 chr17 22083341 22083555 + 0 NA Intergenic Intergenic -13560 ENSMUSG00000117234.1 ENSMUSG00000117234 ENSMUST00000232840 Gm7818 processed_pseudogene Interval_87935 chr19 57200214 57200779 + 0 NA intron (ENSMUSG00000025085.16, intron 1 of 20) protein_coding-intron (ENSMUSG00000025085.16, intron 1 of 25) -73464 ENSMUSG00000117684.1 ENSMUSG00000117684 ENSMUST00000237596 4930449E18Rik antisense Interval_154272 chr8 13950476 13950755 + 0 NA Intergenic Intergenic 23636 ENSMUSG00000038365.8 ENSMUSG00000038365 ENSMUST00000209310 Fbxo25 protein_coding Interval_74240 chr17 47648766 47649359 + 0 NA promoter-TSS (ENSMUSG00000090115.7) protein_coding-promoter-TSS (ENSMUSG00000090115.7) -23658 ENSMUSG00000090115.7 ENSMUSG00000090115 ENSMUST00000131550 Usp49 protein_coding Interval_166916 chr9 63915968 63916407 + 0 NA Intergenic Intergenic 11562 ENSMUSG00000111058.1 ENSMUSG00000111058 ENSMUST00000214827 Gm36033 lincRNA Interval_143138 chr7 3610888 3611691 + 0 NA exon (ENSMUSG00000054594.13, exon 4 of 5) protein_coding-exon (ENSMUSG00000054594.13, exon 4 of 5) 4796 ENSMUSG00000054594.13 ENSMUSG00000054594 ENSMUST00000148645 Oscar protein_coding Interval_72806 chr17 32271352 32271992 + 0 NA intron (ENSMUSG00000024002.18, intron 1 of 10) protein_coding-intron (ENSMUSG00000024002.18, intron 1 of 19) 12461 ENSMUSG00000024002.18 ENSMUSG00000024002 ENSMUST00000230982 Brd4 protein_coding Interval_168330 chr9 78783851 78784077 + 0 NA Intergenic Intergenic -16432 ENSMUSG00000110809.1 ENSMUSG00000110809 ENSMUST00000215294 Gm46138 processed_pseudogene Interval_95325 chr2 106538565 106539118 + 0 NA Intergenic Intergenic -15738 ENSMUSG00000087226.1 ENSMUSG00000087226 ENSMUST00000130634 Gm14015 lincRNA Interval_94212 chr2 85161063 85161352 + 0 NA intron (ENSMUSG00000085135.7, intron 1 of 3) antisense-intron (ENSMUSG00000085135.7, intron 1 of 3) 429 ENSMUSG00000085135.7 ENSMUSG00000085135 ENSMUST00000139377 Gm13713 antisense Interval_138840 chr6 92463757 92464397 + 0 NA intron (ENSMUSG00000030020.13, intron 2 of 8) protein_coding-intron (ENSMUSG00000030020.13, intron 2 of 8) -97700 ENSMUSG00000098130.1 ENSMUSG00000098130 ENSMUST00000182175 Gm17797 processed_pseudogene Interval_40149 chr12 101966883 101967592 + 0 NA TTS (ENSMUSG00000113902.1) protein_coding-TTS (ENSMUSG00000113902.1) -8751 ENSMUSG00000041781.9 ENSMUSG00000041781 ENSMUST00000047357 Cpsf2 protein_coding Interval_15174 chr10 43092481 43093665 + 0 NA intron (ENSMUSG00000038248.8, intron 4 of 6) protein_coding-intron (ENSMUSG00000038248.8, intron 4 of 6) 58080 ENSMUSG00000111171.1 ENSMUSG00000111171 ENSMUST00000213469 Gm47815 antisense Interval_71275 chr17 21826709 21828023 + 0 NA intron (ENSMUSG00000069743.5, intron 2 of 4) protein_coding-intron (ENSMUSG00000069743.5, intron 2 of 4) 18406 ENSMUSG00000069743.5 ENSMUSG00000069743 ENSMUST00000232918 Zfp820 protein_coding Interval_158998 chr8 88603778 88604834 + 0 NA Intergenic Intergenic 21501 ENSMUSG00000031661.12 ENSMUSG00000031661 ENSMUST00000211113 Nkd1 protein_coding Interval_138932 chr6 93620727 93623531 + 0 NA Intergenic Intergenic 28096 ENSMUSG00000107739.1 ENSMUSG00000107739 ENSMUST00000203479 Gm7812 processed_pseudogene Interval_44930 chr13 50164585 50164773 + 0 NA TTS (ENSMUSG00000113437.1) unprocessed_pseudogene-TTS (ENSMUSG00000113437.1) 3170 ENSMUSG00000113437.1 ENSMUSG00000113437 ENSMUST00000222880 Gm47412 unprocessed_pseudogene Interval_78002 chr18 6574175 6575121 + 0 NA Intergenic Intergenic 17518 ENSMUSG00000117425.1 ENSMUSG00000117425 ENSMUST00000234402 Gm7464 processed_pseudogene Interval_121470 chr4 156013538 156014150 + 0 NA promoter-TSS (ENSMUSG00000029075.6) protein_coding-promoter-TSS (ENSMUSG00000029075.6) -12 ENSMUSG00000029075.6 ENSMUSG00000029075 ENSMUST00000127377 Tnfrsf4 protein_coding Interval_42780 chr13 19393788 19394461 + 0 NA exon (ENSMUSG00000105848.1, exon 1 of 1) TEC-exon (ENSMUSG00000105848.1, exon 1 of 1) 1329 ENSMUSG00000105848.1 ENSMUSG00000105848 ENSMUST00000196136 Gm42683 TEC Interval_154449 chr8 17797871 17798812 + 0 NA Intergenic Intergenic -263060 ENSMUSG00000060924.15 ENSMUSG00000060924 ENSMUST00000122983 Csmd1 protein_coding Interval_62836 chr15 97337770 97339677 + 0 NA intron (ENSMUSG00000044250.8, intron 3 of 5) protein_coding-intron (ENSMUSG00000044250.8, intron 3 of 5) -22479 ENSMUSG00000044250.8 ENSMUSG00000044250 ENSMUST00000226495 Pced1b protein_coding Interval_130498 chr5 128431979 128434118 + 0 NA promoter-TSS (ENSMUSG00000034310.8) protein_coding-promoter-TSS (ENSMUSG00000034310.8) -11368 ENSMUSG00000106275.1 ENSMUSG00000106275 ENSMUST00000200324 Gm42495 lincRNA Interval_156923 chr8 61702627 61703541 + 0 NA intron (ENSMUSG00000058056.16, intron 6 of 8) protein_coding-intron (ENSMUSG00000058056.16, intron 7 of 19) 118432 ENSMUSG00000110131.1 ENSMUSG00000110131 ENSMUST00000210904 Gm18066 processed_pseudogene Interval_163474 chr9 21607921 21608246 + 0 NA exon (ENSMUSG00000111812.1, exon 1 of 1) processed_pseudogene-exon (ENSMUSG00000111812.1, exon 1 of 1) 244 ENSMUSG00000111812.1 ENSMUSG00000111812 ENSMUST00000217049 Gm7904 processed_pseudogene Interval_118018 chr4 128163366 128165212 + 0 NA promoter-TSS (ENSMUSG00000087459.8) antisense-promoter-TSS (ENSMUSG00000087459.8) 2678 ENSMUSG00000087459.8 ENSMUSG00000087459 ENSMUST00000179945 Csmd2os antisense Interval_104665 chr3 69238356 69238630 + 0 NA Intergenic Intergenic 16074 ENSMUSG00000098207.1 ENSMUSG00000098207 ENSMUST00000183126 Arl14 protein_coding Interval_93924 chr2 79428508 79430276 + 0 NA promoter-TSS (ENSMUSG00000075256.9) protein_coding-promoter-TSS (ENSMUSG00000075256.9) 27359 ENSMUSG00000034701.9 ENSMUSG00000034701 ENSMUST00000041099 Neurod1 protein_coding Interval_125207 chr5 65348314 65348648 + 0 NA promoter-TSS (ENSMUSG00000029195.10) protein_coding-promoter-TSS (ENSMUSG00000029195.10) 73 ENSMUSG00000029195.10 ENSMUSG00000029195 ENSMUST00000205084 Klb protein_coding Interval_156846 chr8 61055879 61056394 + 0 NA intron (ENSMUSG00000031644.19, intron 16 of 31) protein_coding-intron (ENSMUSG00000031644.19, intron 17 of 32) 6087 ENSMUSG00000109708.1 ENSMUSG00000109708 ENSMUST00000211661 Gm45809 TEC Interval_17431 chr10 76596184 76596790 + 0 NA exon (ENSMUSG00000020241.13, exon 28 of 28) protein_coding-exon (ENSMUSG00000020241.13, exon 28 of 28) 9354 ENSMUSG00000001155.13 ENSMUSG00000001155 ENSMUST00000146344 Ftcd protein_coding Interval_163939 chr9 29408094 29408262 + 0 NA intron (ENSMUSG00000059974.10, intron 2 of 2) protein_coding-intron (ENSMUSG00000059974.10, intron 2 of 7) 184332 ENSMUSG00000085638.1 ENSMUSG00000085638 ENSMUST00000141752 Gm15521 sense_intronic Interval_115751 chr4 103346091 103346328 + 0 NA intron (ENSMUSG00000035069.3, intron 2 of 3) protein_coding-intron (ENSMUSG00000035069.3, intron 7 of 8) 21725 ENSMUSG00000035069.3 ENSMUSG00000035069 ENSMUST00000133178 Oma1 protein_coding Interval_139434 chr6 100155634 100156630 + 0 NA Intergenic Intergenic -12318 ENSMUSG00000107558.1 ENSMUSG00000107558 ENSMUST00000204605 2010109P13Rik TEC Interval_85912 chr19 32963669 32964825 + 0 NA Intergenic Intergenic 6061 ENSMUSG00000084512.1 ENSMUSG00000084512 ENSMUST00000122563 Gm22482 misc_RNA Interval_124608 chr5 52327234 52327435 + 0 NA Intergenic Intergenic 15026 ENSMUSG00000104751.1 ENSMUSG00000104751 ENSMUST00000198797 Gm43179 lincRNA Interval_53935 chr14 63499737 63502333 + 0 NA promoter-TSS (ENSMUSG00000021953.14) protein_coding-promoter-TSS (ENSMUSG00000021953.14) -3896 ENSMUSG00000021953.14 ENSMUSG00000021953 ENSMUST00000167685 Tdh protein_coding Interval_67976 chr16 62414735 62414947 + 0 NA Intergenic Intergenic 69108 ENSMUSG00000118558.1 ENSMUSG00000118558 ENSMUST00000239089 CT010569.1 processed_pseudogene Interval_31726 chr11 102481092 102481551 + 0 NA exon (ENSMUSG00000034621.14, exon 6 of 6) protein_coding-exon (ENSMUSG00000034621.14, exon 6 of 6) 11288 ENSMUSG00000082487.1 ENSMUSG00000082487 ENSMUST00000117568 Gm11628 processed_pseudogene Interval_63121 chr15 99205554 99206511 + 0 NA exon (ENSMUSG00000051934.5, exon 10 of 10) protein_coding-exon (ENSMUSG00000051934.5, exon 10 of 10) -31095 ENSMUSG00000087991.1 ENSMUSG00000087991 ENSMUST00000157366 Gm25057 misc_RNA Interval_78608 chr18 15136982 15137437 + 0 NA intron (ENSMUSG00000036225.15, intron 1 of 4) protein_coding-intron (ENSMUSG00000036225.15, intron 1 of 4) -57573 ENSMUSG00000117613.1 ENSMUSG00000117613 ENSMUST00000235045 Gm2629 lincRNA Interval_61031 chr15 78868353 78870414 + 0 NA promoter-TSS (ENSMUSG00000097085.2) lincRNA-promoter-TSS (ENSMUSG00000097085.2) -850 ENSMUSG00000097085.2 ENSMUSG00000097085 ENSMUST00000181146 Gm26634 lincRNA Interval_166867 chr9 63420264 63421487 + 0 NA TTS (ENSMUSG00000037801.13) protein_coding-TTS (ENSMUSG00000037801.13) -21444 ENSMUSG00000093137.1 ENSMUSG00000093137 ENSMUST00000175396 Gm25995 snRNA Interval_52075 chr14 35161716 35162213 + 0 NA intron (ENSMUSG00000041078.7, intron 4 of 15) protein_coding-intron (ENSMUSG00000041078.7, intron 4 of 15) 57474 ENSMUSG00000115826.1 ENSMUSG00000115826 ENSMUST00000227262 Gm49034 processed_pseudogene Interval_84933 chr19 19109981 19111941 + 0 NA exon (ENSMUSG00000036192.15, exon 1 of 10) protein_coding-exon (ENSMUSG00000036192.15, exon 1 of 10) -109861 ENSMUSG00000036192.15 ENSMUSG00000036192 ENSMUST00000147907 Rorb protein_coding Interval_153089 chr7 141288160 141288469 + 0 NA Intergenic Intergenic -4817 ENSMUSG00000025496.5 ENSMUSG00000025496 ENSMUST00000209649 Drd4 protein_coding Interval_61604 chr15 82917606 82918181 + 0 NA intron (ENSMUSG00000041852.15, intron 1 of 1) protein_coding-intron (ENSMUSG00000041852.15, intron 1 of 1) -18082 ENSMUSG00000041852.15 ENSMUSG00000041852 ENSMUST00000229439 Tcf20 protein_coding Interval_63668 chr15 102673598 102673993 + 0 NA Intergenic Intergenic -1929 ENSMUSG00000076009.1 ENSMUSG00000076009 ENSMUST00000102055 Mir688 miRNA Interval_158872 chr8 87617866 87618536 + 0 NA Intergenic Intergenic -18456 ENSMUSG00000089301.1 ENSMUSG00000089301 ENSMUST00000158676 Gm24841 misc_RNA Interval_53019 chr14 53576458 53578052 + 0 NA Intergenic Intergenic -9245 ENSMUSG00000104738.1 ENSMUSG00000104738 ENSMUST00000198999 Trav3-2 TR_V_pseudogene Interval_160508 chr8 110130389 110131389 + 0 NA Intergenic Intergenic 22097 ENSMUSG00000095941.3 ENSMUSG00000095941 ENSMUST00000178785 Tle7 protein_coding Interval_53753 chr14 61528805 61529170 + 0 NA Intergenic Intergenic -14740 ENSMUSG00000115802.1 ENSMUSG00000115802 ENSMUST00000226286 Vmn1r-ps136 unprocessed_pseudogene Interval_171214 chr9 115272918 115273524 + 0 NA intron (ENSMUSG00000032437.10, intron 3 of 15) protein_coding-intron (ENSMUSG00000032437.10, intron 3 of 15) 8760 ENSMUSG00000111564.1 ENSMUSG00000111564 ENSMUST00000214793 Stmn1-rs1 processed_pseudogene Interval_69369 chr16 92514519 92515491 + 0 NA intron (ENSMUSG00000022949.9, intron 1 of 5) protein_coding-intron (ENSMUSG00000022949.9, intron 1 of 5) 29269 ENSMUSG00000022949.9 ENSMUSG00000022949 ENSMUST00000023670 Clic6 protein_coding Interval_15304 chr10 44368441 44369379 + 0 NA Intergenic Intergenic 9234 ENSMUSG00000089260.1 ENSMUSG00000089260 ENSMUST00000158635 Mir1929 miRNA Interval_121595 chr5 3732881 3733968 + 0 NA TTS (ENSMUSG00000040351.11) protein_coding-TTS (ENSMUSG00000040351.11) 22153 ENSMUSG00000105950.1 ENSMUSG00000105950 ENSMUST00000197051 Gm43679 TEC Interval_94812 chr2 94590289 94591339 + 0 NA TTS (ENSMUSG00000083204.1) processed_pseudogene-TTS (ENSMUSG00000083204.1) 607 ENSMUSG00000083204.1 ENSMUSG00000083204 ENSMUST00000120767 Gm13788 processed_pseudogene Interval_161554 chr8 121171572 121171766 + 0 NA intron (ENSMUSG00000092329.1, intron 1 of 15) protein_coding-intron (ENSMUSG00000092329.1, intron 1 of 15) 30726 ENSMUSG00000103830.1 ENSMUSG00000103830 ENSMUST00000191778 Gm37609 TEC Interval_68289 chr16 72622850 72624521 + 0 NA intron (ENSMUSG00000022883.11, intron 1 of 28) protein_coding-intron (ENSMUSG00000022883.11, intron 1 of 1) -251244 ENSMUSG00000116910.1 ENSMUSG00000116910 ENSMUST00000232381 Gm49670 processed_pseudogene Interval_95813 chr2 116849887 116851036 + 0 NA intron (ENSMUSG00000086462.1, intron 3 of 3) antisense-intron (ENSMUSG00000086462.1, intron 3 of 3) 26707 ENSMUSG00000086462.1 ENSMUSG00000086462 ENSMUST00000151391 Gm13990 antisense Interval_78779 chr18 20589465 20590273 + 0 NA intron (ENSMUSG00000044393.15, intron 8 of 14) protein_coding-intron (ENSMUSG00000044393.15, intron 8 of 14) 31623 ENSMUSG00000044393.15 ENSMUSG00000044393 ENSMUST00000121837 Dsg2 protein_coding Interval_93249 chr2 71452684 71453822 + 0 NA promoter-TSS (ENSMUSG00000041921.16) protein_coding-promoter-TSS (ENSMUSG00000041921.16) -2639 ENSMUSG00000087789.1 ENSMUSG00000087789 ENSMUST00000157164 Gm23166 snRNA Interval_50129 chr14 8163907 8164685 + 0 NA exon (ENSMUSG00000033885.15, exon 18 of 18) protein_coding-exon (ENSMUSG00000033885.15, exon 18 of 18) 2800 ENSMUSG00000021748.9 ENSMUSG00000021748 ENSMUST00000224690 Pdhb protein_coding Interval_56169 chr14 109855230 109855793 + 0 NA Intergenic Intergenic 27672 ENSMUSG00000089119.1 ENSMUSG00000089119 ENSMUST00000158494 Gm25901 snoRNA Interval_92698 chr2 62991950 62992206 + 0 NA intron (ENSMUSG00000059742.10, intron 2 of 6) protein_coding-intron (ENSMUSG00000059742.10, intron 2 of 15) 182891 ENSMUSG00000085029.1 ENSMUSG00000085029 ENSMUST00000137221 Gm13569 antisense Interval_38930 chr12 83885508 83885723 + 0 NA intron (ENSMUSG00000021224.15, intron 1 of 8) protein_coding-intron (ENSMUSG00000021224.15, intron 1 of 12) -9733 ENSMUSG00000113423.1 ENSMUSG00000113423 ENSMUST00000220790 Gm3791 processed_pseudogene Interval_128025 chr5 110344239 110344764 + 0 NA promoter-TSS (ENSMUSG00000072754.9) protein_coding-promoter-TSS (ENSMUSG00000072754.9) -1352 ENSMUSG00000029503.16 ENSMUSG00000029503 ENSMUST00000200214 P2rx2 protein_coding Interval_5762 chr1 91546916 91548329 + 0 NA TTS (ENSMUSG00000026311.16) protein_coding-TTS (ENSMUSG00000026311.16) 6890 ENSMUSG00000026311.16 ENSMUSG00000026311 ENSMUST00000188879 Asb1 protein_coding Interval_136571 chr6 55799704 55799910 + 0 NA Intergenic Intergenic -87018 ENSMUSG00000037973.6 ENSMUSG00000037973 ENSMUST00000169699 Itprid1 protein_coding Interval_84816 chr19 17017137 17017532 + 0 NA intron (ENSMUSG00000039126.10, intron 5 of 6) protein_coding-intron (ENSMUSG00000039126.10, intron 5 of 19) 39853 ENSMUSG00000098298.1 ENSMUSG00000098298 ENSMUST00000184854 Gm27970 misc_RNA Interval_63644 chr15 102503994 102505577 + 0 NA TTS (ENSMUSG00000071586.4) protein_coding-TTS (ENSMUSG00000071586.4) 1063 ENSMUSG00000071586.4 ENSMUSG00000071586 ENSMUST00000096145 Gm10337 protein_coding Interval_125456 chr5 67281855 67282425 + 0 NA intron (ENSMUSG00000037720.16, intron 4 of 5) protein_coding-intron (ENSMUSG00000037720.16, intron 6 of 7) -20878 ENSMUSG00000107319.1 ENSMUSG00000107319 ENSMUST00000201816 Gm42670 antisense Interval_75630 chr17 69497750 69498019 + 0 NA Intergenic Intergenic -22009 ENSMUSG00000117053.1 ENSMUSG00000117053 ENSMUST00000232967 A730049N16Rik antisense Interval_161852 chr8 123202237 123202952 + 0 NA TTS (ENSMUSG00000019278.5) protein_coding-TTS (ENSMUSG00000019278.5) -4029 ENSMUSG00000069862.6 ENSMUSG00000069862 ENSMUST00000139165 Rps12-ps9 processed_pseudogene Interval_101825 chr3 9759344 9759711 + 0 NA intron (ENSMUSG00000089794.1, intron 1 of 1) protein_coding-intron (ENSMUSG00000027508.15, intron 1 of 7) 1920 ENSMUSG00000089794.1 ENSMUSG00000089794 ENSMUST00000160368 Gm16337 lincRNA Interval_75819 chr17 71641540 71642798 + 0 NA promoter-TSS (ENSMUSG00000041057.10) protein_coding-promoter-TSS (ENSMUSG00000041057.10) -527 ENSMUSG00000041057.10 ENSMUSG00000041057 ENSMUST00000234339 Wdr43 protein_coding Interval_60421 chr15 73645207 73646278 + 0 NA promoter-TSS (ENSMUSG00000079020.9) protein_coding-promoter-TSS (ENSMUSG00000079020.9) -110 ENSMUSG00000099958.1 ENSMUSG00000099958 ENSMUST00000188278 1700010B13Rik processed_transcript Interval_20047 chr10 112661321 112661884 + 0 NA Intergenic Intergenic -29977 ENSMUSG00000112678.1 ENSMUSG00000112678 ENSMUST00000219009 Gm47492 processed_pseudogene Interval_69668 chr16 95124127 95124362 + 0 NA Intergenic Intergenic 21840 ENSMUSG00000116667.1 ENSMUSG00000116667 ENSMUST00000232306 Gm49641 processed_pseudogene Interval_88806 chr2 11320403 11320656 + 0 NA promoter-TSS (ENSMUSG00000102196.1) lincRNA-promoter-TSS (ENSMUSG00000102196.1) -655 ENSMUSG00000102196.1 ENSMUSG00000102196 ENSMUST00000195716 Gm38171 lincRNA Interval_78522 chr18 14256005 14256883 + 0 NA intron (ENSMUSG00000117633.1, intron 2 of 3) lincRNA-intron (ENSMUSG00000117633.1, intron 2 of 3) 24135 ENSMUSG00000117633.1 ENSMUSG00000117633 ENSMUST00000234218 8430422H06Rik lincRNA Interval_108808 chr3 131636014 131637124 + 0 NA intron (ENSMUSG00000028032.13, intron 14 of 14) protein_coding-intron (ENSMUSG00000028032.13, intron 11 of 11) -22789 ENSMUSG00000105973.1 ENSMUSG00000105973 ENSMUST00000198636 Gm42881 TEC Interval_52116 chr14 36825212 36825433 + 0 NA Intergenic Intergenic 30722 ENSMUSG00000065894.1 ENSMUSG00000065894 ENSMUST00000083960 n-R5s46 rRNA Interval_31663 chr11 102106906 102108226 + 0 NA promoter-TSS (ENSMUSG00000017311.15) protein_coding-promoter-TSS (ENSMUSG00000017311.15) 256 ENSMUSG00000017311.15 ENSMUSG00000017311 ENSMUST00000177149 Pyy protein_coding Interval_99543 chr2 163059100 163059732 + 0 NA promoter-TSS (ENSMUSG00000017861.11) protein_coding-promoter-TSS (ENSMUSG00000017861.11) -8674 ENSMUSG00000099091.1 ENSMUSG00000099091 ENSMUST00000184607 Mir7003 miRNA Interval_13000 chr10 9085173 9085880 + 0 NA Intergenic Intergenic -14051 ENSMUSG00000111077.1 ENSMUSG00000111077 ENSMUST00000216441 Gm48743 TEC Interval_12308 chr1 191562820 191563939 + 0 NA intron (ENSMUSG00000037474.13, intron 5 of 14) protein_coding-intron (ENSMUSG00000037474.13, intron 5 of 14) 12135 ENSMUSG00000037474.13 ENSMUSG00000037474 ENSMUST00000192014 Dtl protein_coding Interval_131907 chr5 140732324 140732754 + 0 NA intron (ENSMUSG00000050022.16, intron 2 of 7) protein_coding-intron (ENSMUSG00000050022.16, intron 2 of 7) 8401 ENSMUSG00000050022.16 ENSMUSG00000050022 ENSMUST00000176035 Amz1 protein_coding Interval_38329 chr12 77262758 77263218 + 0 NA intron (ENSMUSG00000021065.16, intron 1 of 1) protein_coding-intron (ENSMUSG00000021065.16, intron 1 of 11) -24325 ENSMUSG00000112150.1 ENSMUSG00000112150 ENSMUST00000219513 9530018F02Rik bidirectional_promoter_lncRNA Interval_104220 chr3 60877896 60878106 + 0 NA TTS (ENSMUSG00000027694.9) transcribed_processed_pseudogene-TTS (ENSMUSG00000027694.9) 987 ENSMUSG00000027694.9 ENSMUSG00000027694 ENSMUST00000099086 Gm8325 transcribed_processed_pseudogene Interval_122407 chr5 22289345 22290436 + 0 NA intron (ENSMUSG00000042453.14, intron 1 of 7) protein_coding-intron (ENSMUSG00000042453.14, intron 1 of 63) -2897 ENSMUSG00000089793.1 ENSMUSG00000089793 ENSMUST00000159075 Gm16112 processed_pseudogene Interval_172396 chrX 17551547 17552011 + 0 NA Intergenic Intergenic 19862 ENSMUSG00000025040.13 ENSMUSG00000025040 ENSMUST00000142638 Fundc1 protein_coding Interval_144684 chr7 27514644 27515523 + 0 NA intron (ENSMUSG00000053198.14, intron 1 of 1) protein_coding-intron (ENSMUSG00000053198.14, intron 1 of 2) -6961 ENSMUSG00000087371.1 ENSMUSG00000087371 ENSMUST00000147449 Gm15541 antisense Interval_72614 chr17 31056873 31058229 + 0 NA promoter-TSS (ENSMUSG00000024030.7) protein_coding-promoter-TSS (ENSMUSG00000024030.7) -176 ENSMUSG00000024030.7 ENSMUSG00000024030 ENSMUST00000236241 Abcg1 protein_coding Interval_111692 chr4 25976885 25978211 + 0 NA Intergenic Intergenic 37183 ENSMUSG00000088547.1 ENSMUSG00000088547 ENSMUST00000157922 Gm24965 snRNA Interval_80602 chr18 44550439 44551173 + 0 NA intron (ENSMUSG00000071856.10, intron 3 of 18) protein_coding-intron (ENSMUSG00000071856.10, intron 3 of 18) -111297 ENSMUSG00000097610.2 ENSMUSG00000097610 ENSMUST00000202771 A930012L18Rik antisense Interval_7273 chr1 128358895 128360302 + 0 NA promoter-TSS (ENSMUSG00000026355.11) protein_coding-promoter-TSS (ENSMUSG00000026355.11) -13556 ENSMUSG00000026355.11 ENSMUSG00000026355 ENSMUST00000188755 Mcm6 protein_coding Interval_174766 chrX 166238330 166240170 + 0 NA intron (ENSMUSG00000031342.17, intron 1 of 6) protein_coding-intron (ENSMUSG00000031342.17, intron 1 of 6) 33396 ENSMUSG00000084080.1 ENSMUSG00000084080 ENSMUST00000121844 Gm15227 processed_pseudogene Interval_131402 chr5 136949614 136950991 + 0 NA Intergenic Intergenic -12543 ENSMUSG00000019054.13 ENSMUSG00000019054 ENSMUST00000152658 Fis1 protein_coding Interval_156768 chr8 58565583 58566473 + 0 NA intron (ENSMUSG00000096914.3, intron 3 of 5) protein_coding-intron (ENSMUSG00000096914.3, intron 1 of 3) 38566 ENSMUSG00000110227.1 ENSMUSG00000110227 ENSMUST00000209736 Gm45634 TEC Interval_74171 chr17 46889607 46891296 + 0 NA promoter-TSS (ENSMUSG00000036430.8) protein_coding-promoter-TSS (ENSMUSG00000036430.8) -233 ENSMUSG00000036430.8 ENSMUSG00000036430 ENSMUST00000040434 Tbcc protein_coding Interval_153180 chr7 142140345 142141156 + 0 NA Intergenic Intergenic 3857 ENSMUSG00000110061.1 ENSMUSG00000110061 ENSMUST00000210537 Gm45337 protein_coding Interval_174020 chrX 129910108 129910670 + 0 NA intron (ENSMUSG00000034480.18, intron 5 of 26) protein_coding-intron (ENSMUSG00000034480.18, intron 5 of 26) 160647 ENSMUSG00000034480.18 ENSMUSG00000034480 ENSMUST00000133457 Diaph2 protein_coding Interval_12003 chr1 188696460 188696664 + 0 NA intron (ENSMUSG00000026609.15, intron 37 of 70) protein_coding-intron (ENSMUSG00000026609.15, intron 37 of 70) -63914 ENSMUSG00000084550.1 ENSMUSG00000084550 ENSMUST00000122601 Gm25269 snRNA Interval_119610 chr4 138708578 138708910 + 0 NA Intergenic Intergenic 16477 ENSMUSG00000043621.13 ENSMUSG00000043621 ENSMUST00000135156 Ubxn10 protein_coding Interval_152762 chr7 137319100 137319319 + 0 NA Intergenic Intergenic -5223 ENSMUSG00000010476.14 ENSMUSG00000010476 ENSMUST00000209864 Ebf3 protein_coding Interval_45651 chr13 56566864 56567712 + 0 NA Intergenic Intergenic -18879 ENSMUSG00000021539.9 ENSMUSG00000021539 ENSMUST00000225183 Lect2 protein_coding Interval_59370 chr15 51957882 51959252 + 0 NA Intergenic Intergenic 32943 ENSMUSG00000022314.10 ENSMUSG00000022314 ENSMUST00000226529 Rad21 protein_coding Interval_41739 chr12 118564283 118564982 + 0 NA Intergenic Intergenic -34439 ENSMUSG00000113875.1 ENSMUSG00000113875 ENSMUST00000222459 D230030E09Rik lincRNA Interval_101286 chr2 180190196 180191359 + 0 NA exon (ENSMUSG00000015647.9, exon 38 of 79) protein_coding-exon (ENSMUSG00000015647.9, exon 38 of 79) -10954 ENSMUSG00000098735.1 ENSMUSG00000098735 ENSMUST00000185089 Mir7005 miRNA Interval_114180 chr4 66070352 66071458 + 0 NA intron (ENSMUSG00000028373.16, intron 3 of 21) protein_coding-intron (ENSMUSG00000028373.16, intron 4 of 22) -282944 ENSMUSG00000083080.1 ENSMUSG00000083080 ENSMUST00000119808 Gm11484 processed_pseudogene Interval_27913 chr11 70815125 70816279 + 0 NA Intergenic Intergenic -3116 ENSMUSG00000057135.12 ENSMUSG00000057135 ENSMUST00000074572 Scimp protein_coding Interval_72814 chr17 32333447 32335080 + 0 NA promoter-TSS (ENSMUSG00000002625.10) protein_coding-promoter-TSS (ENSMUSG00000002625.10) 2290 ENSMUSG00000002625.10 ENSMUSG00000002625 ENSMUST00000235387 Akap8l protein_coding Interval_48132 chr13 96499082 96499318 + 0 NA intron (ENSMUSG00000021668.15, intron 5 of 12) protein_coding-intron (ENSMUSG00000021668.15, intron 6 of 14) 8467 ENSMUSG00000091109.1 ENSMUSG00000091109 ENSMUST00000165358 Gm17622 protein_coding Interval_47223 chr13 78236606 78238382 + 0 NA TTS (ENSMUSG00000087143.9) antisense-TTS (ENSMUSG00000087143.9) 34707 ENSMUSG00000087143.9 ENSMUSG00000087143 ENSMUST00000183171 A830082K12Rik antisense Interval_128599 chr5 114228587 114230000 + 0 NA intron (ENSMUSG00000042010.16, intron 23 of 40) protein_coding-intron (ENSMUSG00000042010.16, intron 34 of 51) 8632 ENSMUSG00000084243.1 ENSMUSG00000084243 ENSMUST00000119639 Gm13784 processed_pseudogene Interval_133685 chr6 8660974 8661856 + 0 NA intron (ENSMUSG00000062995.12, intron 3 of 4) protein_coding-intron (ENSMUSG00000062995.12, intron 8 of 13) -64426 ENSMUSG00000107724.1 ENSMUSG00000107724 ENSMUST00000204813 Gm16042 processed_pseudogene Interval_138858 chr6 92705072 92706739 + 0 NA intron (ENSMUSG00000030020.13, intron 1 of 8) protein_coding-intron (ENSMUSG00000030020.13, intron 1 of 8) -121727 ENSMUSG00000048636.7 ENSMUSG00000048636 ENSMUST00000133858 A730049H05Rik protein_coding Interval_101417 chr2 181187936 181189742 + 0 NA TTS (ENSMUSG00000016344.14) protein_coding-TTS (ENSMUSG00000016344.14) 1492 ENSMUSG00000016344.14 ENSMUSG00000016344 ENSMUST00000135011 Ppdpf protein_coding Interval_133965 chr6 16867476 16867676 + 0 NA exon (ENSMUSG00000029553.10, exon 2 of 7) protein_coding-exon (ENSMUSG00000029553.10, exon 2 of 7) 30823 ENSMUSG00000029553.10 ENSMUSG00000029553 ENSMUST00000200984 Tfec protein_coding Interval_11019 chr1 178463533 178464637 + 0 NA intron (ENSMUSG00000026495.8, intron 2 of 5) protein_coding-intron (ENSMUSG00000026495.8, intron 3 of 6) 58000 ENSMUSG00000026495.8 ENSMUSG00000026495 ENSMUST00000192905 Efcab2 protein_coding Interval_163815 chr9 26796596 26797044 + 0 NA exon (ENSMUSG00000036395.15, exon 2 of 18) protein_coding-exon (ENSMUSG00000036395.15, exon 2 of 18) 6878 ENSMUSG00000036395.15 ENSMUSG00000036395 ENSMUST00000216272 Glb1l2 protein_coding Interval_4178 chr1 71361923 71362798 + 0 NA exon (ENSMUSG00000050296.14, exon 3 of 3) protein_coding-exon (ENSMUSG00000050296.14, exon 3 of 3) -26574 ENSMUSG00000050296.14 ENSMUSG00000050296 ENSMUST00000189102 Abca12 protein_coding Interval_87092 chr19 46066495 46066886 + 0 NA intron (ENSMUSG00000055491.14, intron 6 of 13) protein_coding-intron (ENSMUSG00000055491.14, intron 6 of 13) -9299 ENSMUSG00000015176.11 ENSMUSG00000015176 ENSMUST00000224490 Nolc1 protein_coding Interval_74803 chr17 56640712 56640945 + 0 NA intron (ENSMUSG00000040828.10, intron 6 of 21) protein_coding-intron (ENSMUSG00000040828.10, intron 6 of 21) -10954 ENSMUSG00000040828.10 ENSMUSG00000040828 ENSMUST00000233947 Catsperd protein_coding Interval_117660 chr4 125396379 125397038 + 0 NA Intergenic Intergenic -93992 ENSMUSG00000001985.9 ENSMUSG00000001985 ENSMUST00000030676 Grik3 protein_coding Interval_142113 chr6 137224138 137224608 + 0 NA Intergenic Intergenic -77444 ENSMUSG00000107567.1 ENSMUSG00000107567 ENSMUST00000203679 4930480K02Rik TEC Interval_119401 chr4 137478150 137478526 + 0 NA intron (ENSMUSG00000028763.18, intron 1 of 96) protein_coding-intron (ENSMUSG00000028763.18, intron 1 of 96) 25054 ENSMUSG00000041399.3 ENSMUSG00000041399 ENSMUST00000048893 1700013G24Rik protein_coding Interval_26311 chr11 56020051 56020245 + 0 NA intron (ENSMUSG00000086020.1, intron 2 of 4) antisense-intron (ENSMUSG00000086020.1, intron 2 of 4) 20862 ENSMUSG00000037393.2 ENSMUSG00000037393 ENSMUST00000037682 Nmur2 protein_coding Interval_49455 chr13 112189386 112190655 + 0 NA Intergenic Intergenic -17952 ENSMUSG00000114745.1 ENSMUSG00000114745 ENSMUST00000223784 Gm48802 lincRNA Interval_93909 chr2 78931359 78931600 + 0 NA Intergenic Intergenic -41193 ENSMUSG00000102286.1 ENSMUSG00000102286 ENSMUST00000193021 Gm37004 TEC Interval_45355 chr13 54631781 54632677 + 0 NA intron (ENSMUSG00000025873.16, intron 2 of 5) protein_coding-intron (ENSMUSG00000025873.16, intron 1 of 10) 10428 ENSMUSG00000025873.16 ENSMUSG00000025873 ENSMUST00000141915 Faf2 protein_coding Interval_6222 chr1 102811092 102811988 + 0 NA Intergenic Intergenic 142008 ENSMUSG00000087908.1 ENSMUSG00000087908 ENSMUST00000157283 Gm22034 snoRNA Interval_80093 chr18 37479426 37480160 + 0 NA exon (ENSMUSG00000047910.6, exon 1 of 1) protein_coding-exon (ENSMUSG00000047910.6, exon 1 of 1) 1979 ENSMUSG00000047910.6 ENSMUSG00000047910 ENSMUST00000051442 Pcdhb16 protein_coding Interval_9151 chr1 154090545 154091411 + 0 NA intron (ENSMUSG00000100627.6, intron 2 of 3) lincRNA-intron (ENSMUSG00000100627.6, intron 2 of 2) -10779 ENSMUSG00000088669.1 ENSMUSG00000088669 ENSMUST00000158044 Gm25336 snoRNA Interval_76647 chr17 83120551 83121132 + 0 NA promoter-TSS (ENSMUSG00000117509.1) lincRNA-promoter-TSS (ENSMUSG00000117509.1) -100 ENSMUSG00000117509.1 ENSMUSG00000117509 ENSMUST00000234289 Gm46606 lincRNA Interval_61034 chr15 78893883 78894503 + 0 NA TTS (ENSMUSG00000033128.9) protein_coding-TTS (ENSMUSG00000033128.9) 2353 ENSMUSG00000099267.1 ENSMUSG00000099267 ENSMUST00000183370 Mir6955 miRNA Interval_63285 chr15 100104058 100104313 + 0 NA intron (ENSMUSG00000023026.16, intron 1 of 37) protein_coding-intron (ENSMUSG00000023026.16, intron 1 of 37) 3976 ENSMUSG00000116311.1 ENSMUSG00000116311 ENSMUST00000229204 4930478M13Rik antisense Interval_31361 chr11 100260903 100262772 + 0 NA promoter-TSS (ENSMUSG00000035557.9) protein_coding-promoter-TSS (ENSMUSG00000035557.9) -808 ENSMUSG00000035557.9 ENSMUSG00000035557 ENSMUST00000080893 Krt17 protein_coding Interval_33438 chr11 116538663 116538920 + 0 NA exon (ENSMUSG00000020802.8, exon 18 of 18) protein_coding-exon (ENSMUSG00000020802.8, exon 18 of 18) 4051 ENSMUSG00000061878.16 ENSMUSG00000061878 ENSMUST00000141798 Sphk1 protein_coding Interval_106797 chr3 100921724 100922903 + 0 NA promoter-TSS (ENSMUSG00000033233.17) protein_coding-promoter-TSS (ENSMUSG00000033233.17) -599 ENSMUSG00000033233.17 ENSMUSG00000033233 ENSMUST00000134993 Trim45 protein_coding Interval_103730 chr3 52129091 52129880 + 0 NA Intergenic Intergenic 50487 ENSMUSG00000103726.1 ENSMUSG00000103726 ENSMUST00000193192 Gm30074 lincRNA Interval_105931 chr3 90147708 90148117 + 0 NA intron (ENSMUSG00000027939.11, intron 13 of 39) protein_coding-intron (ENSMUSG00000027939.11, intron 13 of 39) 21145 ENSMUSG00000104649.1 ENSMUSG00000104649 ENSMUST00000198020 Gm43712 unprocessed_pseudogene Interval_63690 chr15 102862029 102863203 + 0 NA Intergenic Intergenic -58487 ENSMUSG00000001655.6 ENSMUSG00000001655 ENSMUST00000001700 Hoxc13 protein_coding Interval_146887 chr7 54845752 54846326 + 0 NA intron (ENSMUSG00000063297.7, intron 1 of 9) protein_coding-intron (ENSMUSG00000063297.7, intron 1 of 11) 10541 ENSMUSG00000063297.7 ENSMUSG00000063297 ENSMUST00000082373 Luzp2 protein_coding Interval_30698 chr11 95963005 95964145 + 0 NA promoter-TSS (ENSMUSG00000093358.1) miRNA-promoter-TSS (ENSMUSG00000093358.1) -192 ENSMUSG00000093358.1 ENSMUSG00000093358 ENSMUST00000175617 Mir3063 miRNA Interval_1543 chr1 25181552 25183050 + 0 NA intron (ENSMUSG00000033569.17, intron 19 of 30) protein_coding-intron (ENSMUSG00000033569.17, intron 18 of 29) 23395 ENSMUSG00000033569.17 ENSMUSG00000033569 ENSMUST00000189254 Adgrb3 protein_coding Interval_19162 chr10 95235769 95236711 + 0 NA intron (ENSMUSG00000045867.10, intron 2 of 2) protein_coding-intron (ENSMUSG00000045867.10, intron 2 of 2) 75879 ENSMUSG00000112682.1 ENSMUSG00000112682 ENSMUST00000220149 Gm48874 TEC Interval_109857 chr3 149045760 149045948 + 0 NA Intergenic Intergenic 16922 ENSMUSG00000065270.1 ENSMUSG00000065270 ENSMUST00000083336 Gm25127 snRNA Interval_160872 chr8 114403275 114403582 + 0 NA Intergenic Intergenic -14658 ENSMUSG00000008874.3 ENSMUSG00000008874 ENSMUST00000009018 Clec3a protein_coding Interval_115310 chr4 95779841 95780128 + 0 NA intron (ENSMUSG00000028573.18, intron 4 of 7) protein_coding-intron (ENSMUSG00000028573.18, intron 8 of 10) 187051 ENSMUSG00000044125.6 ENSMUSG00000044125 ENSMUST00000143332 9530080O11Rik processed_transcript Interval_106387 chr3 95842122 95843017 + 0 NA intron (ENSMUSG00000015748.13, intron 8 of 15) protein_coding-intron (ENSMUSG00000015748.13, intron 8 of 15) -9761 ENSMUSG00000015748.13 ENSMUSG00000015748 ENSMUST00000161073 Prpf3 protein_coding Interval_37117 chr12 58585929 58586911 + 0 NA Intergenic Intergenic -177486 ENSMUSG00000112487.1 ENSMUSG00000112487 ENSMUST00000219517 Gm18873 processed_pseudogene Interval_116471 chr4 114029339 114029534 + 0 NA Intergenic Intergenic -29933 ENSMUSG00000078598.11 ENSMUSG00000078598 ENSMUST00000153413 Skint5 protein_coding Interval_28800 chr11 78399627 78401433 + 0 NA exon (ENSMUSG00000001095.5, exon 8 of 12) protein_coding-exon (ENSMUSG00000001095.5, exon 8 of 12) 6045 ENSMUSG00000085747.1 ENSMUSG00000085747 ENSMUST00000149865 Slc13a2os antisense Interval_141705 chr6 133881985 133882453 + 0 NA Intergenic Intergenic 18165 ENSMUSG00000107890.1 ENSMUSG00000107890 ENSMUST00000203388 Gm43968 processed_pseudogene Interval_108056 chr3 121171137 121172100 + 0 NA promoter-TSS (ENSMUSG00000028133.17) protein_coding-promoter-TSS (ENSMUSG00000028133.17) 70 ENSMUSG00000028133.17 ENSMUSG00000028133 ENSMUST00000098650 Rwdd3 protein_coding Interval_2721 chr1 43888243 43889248 + 0 NA TTS (ENSMUSG00000100701.1) processed_pseudogene-TTS (ENSMUSG00000100701.1) 694 ENSMUSG00000100701.1 ENSMUSG00000100701 ENSMUST00000191395 Gm19587 processed_pseudogene Interval_30438 chr11 94357157 94357385 + 0 NA exon (ENSMUSG00000020865.16, exon 24 of 31) protein_coding-exon (ENSMUSG00000020865.16, exon 24 of 31) 23818 ENSMUSG00000020864.13 ENSMUSG00000020864 ENSMUST00000124087 Ankrd40 protein_coding Interval_143182 chr7 4297222 4297438 + 0 NA Intergenic Intergenic -4018 ENSMUSG00000108743.1 ENSMUSG00000108743 ENSMUST00000205425 Gm44881 processed_pseudogene Interval_160702 chr8 111704883 111706081 + 0 NA Intergenic Intergenic -14472 ENSMUSG00000031957.6 ENSMUSG00000031957 ENSMUST00000034435 Ctrb1 protein_coding Interval_112182 chr4 35273473 35273901 + 0 NA Intergenic Intergenic -47512 ENSMUSG00000028300.14 ENSMUSG00000028300 ENSMUST00000149138 C9orf72 protein_coding Interval_49950 chr13 118758718 118759216 + 0 NA intron (ENSMUSG00000021732.14, intron 1 of 2) protein_coding-intron (ENSMUSG00000021732.14, intron 1 of 2) -43571 ENSMUSG00000086709.1 ENSMUSG00000086709 ENSMUST00000144680 Gm16263 antisense Interval_4628 chr1 75521196 75522120 + 0 NA promoter-TSS (ENSMUSG00000026213.15) protein_coding-promoter-TSS (ENSMUSG00000026213.15) -6982 ENSMUSG00000026213.15 ENSMUSG00000026213 ENSMUST00000150560 Stk11ip protein_coding Interval_112852 chr4 45520869 45522151 + 0 NA intron (ENSMUSG00000044813.15, intron 1 of 2) protein_coding-intron (ENSMUSG00000044813.15, intron 1 of 5) -20958 ENSMUSG00000088892.1 ENSMUSG00000088892 ENSMUST00000158267 Gm22518 miRNA Interval_104319 chr3 63325855 63326363 + 0 NA intron (ENSMUSG00000027820.12, intron 3 of 5) protein_coding-intron (ENSMUSG00000027820.12, intron 3 of 22) 30843 ENSMUSG00000027820.12 ENSMUSG00000027820 ENSMUST00000193805 Mme protein_coding Interval_170293 chr9 106736970 106737435 + 0 NA intron (ENSMUSG00000040661.6, intron 2 of 21) protein_coding-intron (ENSMUSG00000040661.6, intron 2 of 21) -51900 ENSMUSG00000040813.16 ENSMUSG00000040813 ENSMUST00000185645 Tex264 protein_coding Interval_98564 chr2 153269578 153269823 + 0 NA exon (ENSMUSG00000046020.13, exon 7 of 7) protein_coding-exon (ENSMUSG00000046020.13, exon 7 of 7) -21713 ENSMUSG00000027475.9 ENSMUSG00000027475 ENSMUST00000028977 Kif3b protein_coding Interval_80370 chr18 40218885 40219722 + 0 NA promoter-TSS (ENSMUSG00000024487.5) protein_coding-promoter-TSS (ENSMUSG00000024487.5) 40 ENSMUSG00000024487.5 ENSMUSG00000024487 ENSMUST00000237176 Yipf5 protein_coding Interval_162922 chr9 13246834 13247617 + 0 NA intron (ENSMUSG00000079084.10, intron 1 of 7) protein_coding-intron (ENSMUSG00000079084.10, intron 1 of 8) 257 ENSMUSG00000079084.10 ENSMUSG00000079084 ENSMUST00000215778 Ccdc82 protein_coding Interval_93816 chr2 77171744 77172372 + 0 NA Intergenic Intergenic 27369 ENSMUSG00000042272.17 ENSMUSG00000042272 ENSMUST00000139021 Sestd1 protein_coding Interval_148411 chr7 81105713 81106484 + 0 NA TTS (ENSMUSG00000038763.12) protein_coding-TTS (ENSMUSG00000038763.12) -8752 ENSMUSG00000025726.11 ENSMUSG00000025726 ENSMUST00000119083 Slc28a1 protein_coding Interval_11744 chr1 185104571 185106512 + 0 NA Intergenic Intergenic 13550 ENSMUSG00000104461.1 ENSMUSG00000104461 ENSMUST00000195649 Gm37662 lincRNA Interval_48231 chr13 97319852 97321687 + 0 NA Intergenic Intergenic 37586 ENSMUSG00000097932.2 ENSMUSG00000097932 ENSMUST00000181148 C430039J16Rik lincRNA Interval_134366 chr6 26881337 26881778 + 0 NA Intergenic Intergenic 51140 ENSMUSG00000106742.1 ENSMUSG00000106742 ENSMUST00000201073 Gm42474 processed_pseudogene Interval_52602 chr14 47815374 47816254 + 0 NA intron (ENSMUSG00000115310.1, intron 2 of 2) lincRNA-intron (ENSMUSG00000115310.1, intron 2 of 3) -10495 ENSMUSG00000115215.1 ENSMUSG00000115215 ENSMUST00000226360 Gm41148 lincRNA Interval_90208 chr2 29041009 29042300 + 0 NA intron (ENSMUSG00000079502.8, intron 1 of 6) protein_coding-intron (ENSMUSG00000079502.8, intron 1 of 5) -2294 ENSMUSG00000079502.8 ENSMUSG00000079502 ENSMUST00000113843 Cfap77 protein_coding Interval_131526 chr5 137745654 137746506 + 0 NA promoter-TSS (ENSMUSG00000029723.16) protein_coding-promoter-TSS (ENSMUSG00000029723.16) -6362 ENSMUSG00000045348.16 ENSMUSG00000045348 ENSMUST00000149512 Nyap1 protein_coding Interval_91431 chr2 38790242 38791543 + 0 NA intron (ENSMUSG00000063972.13, intron 2 of 5) protein_coding-intron (ENSMUSG00000063972.13, intron 3 of 10) 13156 ENSMUSG00000082508.1 ENSMUSG00000082508 ENSMUST00000122372 Rpl15-ps4 processed_pseudogene Interval_54553 chr14 70641837 70642456 + 0 NA exon (ENSMUSG00000022101.6, exon 1 of 5) protein_coding-exon (ENSMUSG00000022101.6, exon 1 of 5) 108 ENSMUSG00000022101.6 ENSMUSG00000022101 ENSMUST00000227123 Fgf17 protein_coding Interval_134876 chr6 33023036 33023222 + 0 NA intron (ENSMUSG00000053768.13, intron 2 of 7) protein_coding-intron (ENSMUSG00000053768.13, intron 2 of 7) -15339 ENSMUSG00000085847.1 ENSMUSG00000085847 ENSMUST00000138298 Gm14540 antisense Interval_166315 chr9 58266542 58267844 + 0 NA Intergenic Intergenic 14005 ENSMUSG00000032333.6 ENSMUSG00000032333 ENSMUST00000216864 Stoml1 protein_coding Interval_127415 chr5 103795936 103796376 + 0 NA intron (ENSMUSG00000029313.18, intron 3 of 12) protein_coding-intron (ENSMUSG00000029313.18, intron 3 of 19) 41592 ENSMUSG00000029313.18 ENSMUSG00000029313 ENSMUST00000152145 Aff1 protein_coding Interval_109924 chr3 151762295 151763289 + 0 NA promoter-TSS (ENSMUSG00000039146.5) protein_coding-promoter-TSS (ENSMUSG00000039146.5) 100 ENSMUSG00000039146.5 ENSMUSG00000039146 ENSMUST00000046739 Ifi44l protein_coding Interval_167755 chr9 72557948 72558992 + 0 NA intron (ENSMUSG00000037674.15, intron 2 of 5) protein_coding-intron (ENSMUSG00000037674.15, intron 1 of 8) 6742 ENSMUSG00000099310.1 ENSMUSG00000099310 ENSMUST00000183619 Gm19427 processed_pseudogene Interval_120777 chr4 150590670 150592233 + 0 NA intron (ENSMUSG00000039852.17, intron 3 of 4) protein_coding-intron (ENSMUSG00000039852.17, intron 6 of 16) -22907 ENSMUSG00000085213.1 ENSMUSG00000085213 ENSMUST00000128800 Gm13091 antisense Interval_54731 chr14 73913584 73914067 + 0 NA intron (ENSMUSG00000115289.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000115289.1, intron 3 of 3) -19202 ENSMUSG00000115470.1 ENSMUSG00000115470 ENSMUST00000228234 Gm18683 processed_pseudogene Interval_57338 chr15 8956583 8956809 + 0 NA Intergenic Intergenic -11253 ENSMUSG00000048424.17 ENSMUSG00000048424 ENSMUST00000227191 Ranbp3l protein_coding Interval_88040 chr19 58266721 58267052 + 0 NA intron (ENSMUSG00000025089.15, intron 7 of 9) protein_coding-intron (ENSMUSG00000025089.15, intron 8 of 10) 62747 ENSMUSG00000087002.1 ENSMUSG00000087002 ENSMUST00000143595 Gm16277 antisense Interval_106576 chr3 97427819 97430075 + 0 NA Intergenic Intergenic -6927 ENSMUSG00000051392.5 ENSMUSG00000051392 ENSMUST00000060912 Olfr1402 protein_coding Interval_82037 chr18 67304365 67305111 + 0 NA intron (ENSMUSG00000024525.7, intron 2 of 7) protein_coding-intron (ENSMUSG00000024525.7, intron 2 of 7) -3851 ENSMUSG00000024525.7 ENSMUSG00000024525 ENSMUST00000237149 Impa2 protein_coding Interval_25623 chr11 50254185 50254630 + 0 NA intron (ENSMUSG00000097887.2, intron 1 of 2) antisense-intron (ENSMUSG00000097887.2, intron 1 of 2) -15891 ENSMUSG00000020377.15 ENSMUSG00000020377 ENSMUST00000221081 Ltc4s protein_coding Interval_117016 chr4 119026196 119027235 + 0 NA Intergenic Intergenic -26230 ENSMUSG00000087464.1 ENSMUSG00000087464 ENSMUST00000150754 Gm12862 lincRNA Interval_10026 chr1 165177668 165177870 + 0 NA exon (ENSMUSG00000040848.11, exon 8 of 8) protein_coding-exon (ENSMUSG00000040848.11, exon 8 of 8) 16548 ENSMUSG00000040848.11 ENSMUSG00000040848 ENSMUST00000192565 Sft2d2 protein_coding Interval_115206 chr4 94438908 94439280 + 0 NA Intergenic Intergenic -4610 ENSMUSG00000088295.1 ENSMUSG00000088295 ENSMUST00000157670 Gm26410 misc_RNA Interval_34961 chr12 15678351 15678552 + 0 NA intron (ENSMUSG00000098158.2, intron 1 of 4) transcribed_processed_pseudogene-intron (ENSMUSG00000098158.2, intron 1 of 4) -47462 ENSMUSG00000098158.2 ENSMUSG00000098158 ENSMUST00000182234 Gm4804 transcribed_processed_pseudogene Interval_65630 chr16 24411039 24411889 + 0 NA intron (ENSMUSG00000033306.15, intron 1 of 7) protein_coding-intron (ENSMUSG00000033306.15, intron 1 of 12) -5047 ENSMUSG00000087861.1 ENSMUSG00000087861 ENSMUST00000157236 Gm24440 snRNA Interval_158124 chr8 79014962 79017301 + 0 NA Intergenic Intergenic -1661 ENSMUSG00000064926.1 ENSMUSG00000064926 ENSMUST00000082992 Gm22044 snRNA Interval_28282 chr11 74874647 74875071 + 0 NA intron (ENSMUSG00000038351.14, intron 2 of 23) protein_coding-intron (ENSMUSG00000038351.14, intron 2 of 22) -5767 ENSMUSG00000038351.14 ENSMUSG00000038351 ENSMUST00000148421 Sgsm2 protein_coding Interval_100786 chr2 172522083 172522291 + 0 NA Intergenic Intergenic -12496 ENSMUSG00000081344.5 ENSMUSG00000081344 ENSMUST00000121320 Gm14303 processed_pseudogene Interval_150074 chr7 105625615 105626025 + 0 NA intron (ENSMUSG00000036989.16, intron 1 of 11) protein_coding-intron (ENSMUSG00000036989.16, intron 1 of 11) -1116 ENSMUSG00000110077.1 ENSMUSG00000110077 ENSMUST00000211532 Gm45632 TEC Interval_158014 chr8 78023716 78024022 + 0 NA Intergenic Intergenic -20141 ENSMUSG00000110382.1 ENSMUSG00000110382 ENSMUST00000209933 Gm29895 lincRNA Interval_106736 chr3 100195288 100196086 + 0 NA intron (ENSMUSG00000027865.10, intron 1 of 2) protein_coding-intron (ENSMUSG00000027865.10, intron 11 of 13) -5000 ENSMUSG00000027865.10 ENSMUSG00000027865 ENSMUST00000200036 Gdap2 protein_coding Interval_77409 chr17 88510667 88511588 + 0 NA Intergenic Intergenic -21900 ENSMUSG00000103075.1 ENSMUSG00000103075 ENSMUST00000195386 Gm38109 TEC Interval_93596 chr2 74719821 74720494 + 0 NA intron (ENSMUSG00000079277.9, intron 1 of 2) protein_coding-intron (ENSMUSG00000079277.9, intron 1 of 2) -5913 ENSMUSG00000065500.3 ENSMUSG00000065500 ENSMUST00000083566 Mir10b miRNA Interval_28679 chr11 77718264 77719439 + 0 NA exon (ENSMUSG00000000724.10, exon 6 of 6) protein_coding-exon (ENSMUSG00000000724.10, exon 6 of 6) 2983 ENSMUSG00000000724.10 ENSMUSG00000000724 ENSMUST00000078623 Cryba1 protein_coding Interval_133645 chr6 7971055 7971922 + 0 NA Intergenic Intergenic 11895 ENSMUSG00000096403.2 ENSMUSG00000096403 ENSMUST00000178598 Rnps1-ps processed_pseudogene Interval_156925 chr8 61715373 61716298 + 0 NA intron (ENSMUSG00000058056.16, intron 2 of 8) protein_coding-intron (ENSMUSG00000058056.16, intron 3 of 19) 105681 ENSMUSG00000110131.1 ENSMUSG00000110131 ENSMUST00000210904 Gm18066 processed_pseudogene Interval_24629 chr11 35430852 35431252 + 0 NA intron (ENSMUSG00000056427.10, intron 2 of 3) protein_coding-intron (ENSMUSG00000056427.10, intron 4 of 35) 80983 ENSMUSG00000086311.1 ENSMUSG00000086311 ENSMUST00000124503 Gm12122 sense_intronic Interval_140262 chr6 115874599 115875891 + 0 NA TTS (ENSMUSG00000030323.13) protein_coding-TTS (ENSMUSG00000030323.13) 21657 ENSMUSG00000030323.13 ENSMUSG00000030323 ENSMUST00000155565 Ift122 protein_coding Interval_67370 chr16 48154401 48154849 + 0 NA intron (ENSMUSG00000116755.1, intron 1 of 5) lincRNA-intron (ENSMUSG00000116755.1, intron 1 of 5) 3874 ENSMUSG00000116755.1 ENSMUSG00000116755 ENSMUST00000232155 6430553K19Rik lincRNA Interval_38669 chr12 80944895 80946573 + 0 NA promoter-TSS (ENSMUSG00000021134.17) protein_coding-promoter-TSS (ENSMUSG00000021134.17) 202 ENSMUSG00000021134.17 ENSMUSG00000021134 ENSMUST00000151036 Srsf5 protein_coding Interval_63390 chr15 100777547 100777743 + 0 NA intron (ENSMUSG00000023032.12, intron 2 of 24) protein_coding-intron (ENSMUSG00000023032.12, intron 2 of 24) -25103 ENSMUSG00000023032.12 ENSMUSG00000023032 ENSMUST00000162744 Slc4a8 protein_coding Interval_102402 chr3 24023981 24024766 + 0 NA intron (ENSMUSG00000102758.3, intron 10 of 13) protein_coding-intron (ENSMUSG00000102758.3, intron 10 of 13) -308695 ENSMUSG00000057036.7 ENSMUSG00000057036 ENSMUST00000077389 Gm7536 processed_pseudogene Interval_133422 chr6 4952053 4952458 + 0 NA intron (ENSMUSG00000032827.15, intron 1 of 17) protein_coding-intron (ENSMUSG00000032827.15, intron 2 of 15) 5687 ENSMUSG00000097464.1 ENSMUSG00000097464 ENSMUST00000180425 Gm26736 TEC Interval_38678 chr12 80983515 80984200 + 0 NA Intergenic Intergenic -15779 ENSMUSG00000021135.8 ENSMUSG00000021135 ENSMUST00000220266 Slc10a1 protein_coding Interval_26228 chr11 55287772 55288016 + 0 NA exon (ENSMUSG00000055333.14, exon 8 of 24) protein_coding-exon (ENSMUSG00000055333.14, exon 8 of 24) 24363 ENSMUSG00000055333.14 ENSMUSG00000055333 ENSMUST00000108864 Fat2 protein_coding Interval_28713 chr11 77876144 77877312 + 0 NA Intergenic Intergenic 7816 ENSMUSG00000017453.4 ENSMUSG00000017453 ENSMUST00000155401 Pipox protein_coding Interval_31282 chr11 99317108 99317345 + 0 NA intron (ENSMUSG00000035831.2, intron 6 of 7) protein_coding-intron (ENSMUSG00000035831.2, intron 6 of 7) 5725 ENSMUSG00000035831.2 ENSMUSG00000035831 ENSMUST00000038004 Krt25 protein_coding Interval_16997 chr10 70331042 70331320 + 0 NA Intergenic Intergenic -7121 ENSMUSG00000112676.1 ENSMUSG00000112676 ENSMUST00000219977 Gm20108 processed_pseudogene Interval_23324 chr11 21391550 21391892 + 0 NA Intergenic Intergenic 21321 ENSMUSG00000087253.1 ENSMUSG00000087253 ENSMUST00000131570 Gm12043 processed_transcript Interval_131273 chr5 136113351 136114000 + 0 NA Intergenic Intergenic -3027 ENSMUSG00000039771.13 ENSMUSG00000039771 ENSMUST00000111129 Polr2j protein_coding Interval_160348 chr8 108665924 108666640 + 0 NA intron (ENSMUSG00000038872.10, intron 5 of 15) protein_coding-intron (ENSMUSG00000038872.10, intron 5 of 15) -71311 ENSMUSG00000104292.1 ENSMUSG00000104292 ENSMUST00000191614 Gm38042 TEC Interval_138841 chr6 92469347 92470126 + 0 NA intron (ENSMUSG00000030020.13, intron 2 of 8) protein_coding-intron (ENSMUSG00000030020.13, intron 2 of 8) -92041 ENSMUSG00000098130.1 ENSMUSG00000098130 ENSMUST00000182175 Gm17797 processed_pseudogene Interval_113674 chr4 57462475 57462834 + 0 NA intron (ENSMUSG00000090053.9, intron 1 of 6) protein_coding-intron (ENSMUSG00000090053.9, intron 1 of 6) -5105 ENSMUSG00000081615.1 ENSMUSG00000081615 ENSMUST00000121549 Gm12539 processed_pseudogene Interval_131282 chr5 136153533 136153750 + 0 NA intron (ENSMUSG00000039747.11, intron 3 of 3) protein_coding-intron (ENSMUSG00000039747.11, intron 2 of 2) 16992 ENSMUSG00000039747.11 ENSMUSG00000039747 ENSMUST00000198268 Orai2 protein_coding Interval_47242 chr13 79067847 79068092 + 0 NA Intergenic Intergenic -93750 ENSMUSG00000088435.1 ENSMUSG00000088435 ENSMUST00000157810 Gm25383 snoRNA Interval_49349 chr13 111412990 111413358 + 0 NA Intergenic Intergenic 40249 ENSMUSG00000032745.18 ENSMUSG00000032745 ENSMUST00000129638 Gpbp1 protein_coding Interval_59303 chr15 50996078 50996309 + 0 NA Intergenic Intergenic 98554 ENSMUSG00000115339.1 ENSMUSG00000115339 ENSMUST00000226611 Gm48913 lincRNA Interval_133033 chr5 149423568 149424250 + 0 NA TTS (ENSMUSG00000029659.16) protein_coding-TTS (ENSMUSG00000029659.16) 1190 ENSMUSG00000106750.1 ENSMUSG00000106750 ENSMUST00000201093 Gm43151 antisense Interval_75401 chr17 66362728 66365128 + 0 NA intron (ENSMUSG00000052105.17, intron 9 of 15) protein_coding-intron (ENSMUSG00000052105.17, intron 8 of 13) -44416 ENSMUSG00000117010.1 ENSMUSG00000117010 ENSMUST00000233050 Gm49933 processed_pseudogene Interval_43594 chr13 33964249 33966047 + 0 NA intron (ENSMUSG00000046949.16, intron 1 of 7) protein_coding-intron (ENSMUSG00000046949.16, intron 1 of 7) 142 ENSMUSG00000046949.16 ENSMUSG00000046949 ENSMUST00000222740 Nqo2 protein_coding Interval_143604 chr7 13065368 13065831 + 0 NA Intergenic Intergenic -13219 ENSMUSG00000030380.17 ENSMUSG00000030380 ENSMUST00000183176 Mzf1 protein_coding Interval_33435 chr11 116525231 116525463 + 0 NA Intergenic Intergenic 7730 ENSMUSG00000100779.1 ENSMUSG00000100779 ENSMUST00000186169 Gm29292 antisense Interval_83415 chr18 84986024 84987462 + 0 NA Intergenic Intergenic 26592 ENSMUSG00000118255.1 ENSMUSG00000118255 ENSMUST00000238005 Gm50369 processed_pseudogene Interval_154938 chr8 25180638 25180935 + 0 NA intron (ENSMUSG00000065954.11, intron 3 of 8) protein_coding-intron (ENSMUSG00000065954.11, intron 3 of 12) 20663 ENSMUSG00000065954.11 ENSMUSG00000065954 ENSMUST00000211218 Tacc1 protein_coding Interval_159233 chr8 92024119 92024579 + 0 NA promoter-TSS (ENSMUSG00000101613.1) lincRNA-promoter-TSS (ENSMUSG00000101613.1) -93 ENSMUSG00000101613.1 ENSMUSG00000101613 ENSMUST00000190257 Gm28516 lincRNA Interval_114135 chr4 64010954 64012219 + 0 NA intron (ENSMUSG00000028364.15, intron 6 of 25) protein_coding-intron (ENSMUSG00000028364.15, intron 5 of 24) 35429 ENSMUSG00000028364.15 ENSMUSG00000028364 ENSMUST00000107371 Tnc protein_coding Interval_6667 chr1 118642341 118643213 + 0 NA intron (ENSMUSG00000026380.10, intron 2 of 14) protein_coding-intron (ENSMUSG00000026380.10, intron 2 of 14) -4373 ENSMUSG00000089601.1 ENSMUSG00000089601 ENSMUST00000158976 Gm22094 rRNA Interval_12361 chr1 192542086 192542510 + 0 NA TTS (ENSMUSG00000037375.16) protein_coding-TTS (ENSMUSG00000037375.16) 107558 ENSMUSG00000058248.12 ENSMUSG00000058248 ENSMUST00000151152 Kcnh1 protein_coding Interval_104156 chr3 59203274 59204626 + 0 NA intron (ENSMUSG00000056476.13, intron 15 of 43) protein_coding-intron (ENSMUSG00000056476.13, intron 14 of 42) 6932 ENSMUSG00000036362.2 ENSMUSG00000036362 ENSMUST00000040622 P2ry13 protein_coding Interval_62749 chr15 96616145 96618044 + 0 NA intron (ENSMUSG00000023169.15, intron 2 of 2) protein_coding-intron (ENSMUSG00000023169.15, intron 2 of 15) 25119 ENSMUSG00000023169.15 ENSMUSG00000023169 ENSMUST00000229253 Slc38a1 protein_coding Interval_102123 chr3 18158112 18158656 + 0 NA intron (ENSMUSG00000039519.6, intron 1 of 5) protein_coding-intron (ENSMUSG00000039519.6, intron 1 of 5) 19241 ENSMUSG00000096391.1 ENSMUSG00000096391 ENSMUST00000083241 Gm23686 snRNA Interval_84516 chr19 12037825 12038215 + 0 NA TTS (ENSMUSG00000109417.1) unprocessed_pseudogene-TTS (ENSMUSG00000109417.1) 289 ENSMUSG00000109417.1 ENSMUSG00000109417 ENSMUST00000207831 Gm44859 unprocessed_pseudogene Interval_32343 chr11 107072873 107073070 + 0 NA exon (ENSMUSG00000040481.17, exon 11 of 28) protein_coding-exon (ENSMUSG00000040481.17, exon 11 of 28) -25628 ENSMUSG00000040481.17 ENSMUSG00000040481 ENSMUST00000149486 Bptf protein_coding Interval_17898 chr10 80664589 80665536 + 0 NA TTS (ENSMUSG00000020190.13) protein_coding-TTS (ENSMUSG00000020190.13) 11231 ENSMUSG00000020190.13 ENSMUSG00000020190 ENSMUST00000199949 Mknk2 protein_coding Interval_89069 chr2 15397011 15397787 + 0 NA exon (ENSMUSG00000082632.2, exon 1 of 1) processed_pseudogene-exon (ENSMUSG00000082632.2, exon 1 of 1) 651 ENSMUSG00000082632.2 ENSMUSG00000082632 ENSMUST00000121188 Gm13365 processed_pseudogene Interval_105495 chr3 87030649 87031372 + 0 NA Intergenic Intergenic -7127 ENSMUSG00000104265.1 ENSMUSG00000104265 ENSMUST00000195222 Gm8869 processed_pseudogene Interval_122732 chr5 24967061 24967455 + 0 NA intron (ENSMUSG00000028944.14, intron 3 of 15) protein_coding-intron (ENSMUSG00000028944.14, intron 3 of 15) -18584 ENSMUSG00000059631.6 ENSMUSG00000059631 ENSMUST00000075081 1500035N22Rik lincRNA Interval_10272 chr1 167796104 167796296 + 0 NA intron (ENSMUSG00000026686.14, intron 4 of 8) protein_coding-intron (ENSMUSG00000026686.14, intron 3 of 7) 106963 ENSMUSG00000026686.14 ENSMUSG00000026686 ENSMUST00000028003 Lmx1a protein_coding Interval_3369 chr1 57509306 57510923 + 0 NA Intergenic Intergenic 9298 ENSMUSG00000101826.1 ENSMUSG00000101826 ENSMUST00000188636 Gm8581 processed_pseudogene Interval_8863 chr1 151618966 151619940 + 0 NA intron (ENSMUSG00000026483.13, intron 1 of 13) protein_coding-intron (ENSMUSG00000026483.13, intron 1 of 14) 48080 ENSMUSG00000026483.13 ENSMUSG00000026483 ENSMUST00000086267 Fam129a protein_coding Interval_109306 chr3 138808591 138809506 + 0 NA promoter-TSS (ENSMUSG00000028152.10) protein_coding-promoter-TSS (ENSMUSG00000028152.10) 20114 ENSMUSG00000086123.3 ENSMUSG00000086123 ENSMUST00000153140 Gm16060 processed_pseudogene Interval_3631 chr1 60104198 60104851 + 0 NA promoter-TSS (ENSMUSG00000026017.13) protein_coding-promoter-TSS (ENSMUSG00000026017.13) 3278 ENSMUSG00000026017.13 ENSMUSG00000026017 ENSMUST00000132949 Carf protein_coding Interval_29220 chr11 81645021 81646008 + 0 NA intron (ENSMUSG00000020704.13, intron 1 of 9) protein_coding-intron (ENSMUSG00000020704.13, intron 1 of 9) 58153 ENSMUSG00000087534.1 ENSMUSG00000087534 ENSMUST00000156193 Gm11418 antisense Interval_161339 chr8 119840078 119841354 + 0 NA promoter-TSS (ENSMUSG00000031827.13) protein_coding-promoter-TSS (ENSMUSG00000031827.13) -17999 ENSMUSG00000031827.13 ENSMUSG00000031827 ENSMUST00000212676 Cotl1 protein_coding Interval_155694 chr8 36193811 36194143 + 0 NA intron (ENSMUSG00000110176.1, intron 1 of 3) lincRNA-intron (ENSMUSG00000110176.1, intron 1 of 3) 5605 ENSMUSG00000110176.1 ENSMUSG00000110176 ENSMUST00000209235 Gm35520 lincRNA Interval_50993 chr14 21527346 21527621 + 0 NA intron (ENSMUSG00000021767.19, intron 1 of 15) protein_coding-intron (ENSMUSG00000021767.19, intron 2 of 16) 10608 ENSMUSG00000021767.19 ENSMUSG00000021767 ENSMUST00000226589 Kat6b protein_coding Interval_116587 chr4 115905603 115906227 + 0 NA Intergenic Intergenic 15249 ENSMUSG00000034185.9 ENSMUSG00000034185 ENSMUST00000165938 6430628N08Rik protein_coding Interval_168102 chr9 76452545 76453179 + 0 NA Intergenic Intergenic 114254 ENSMUSG00000032358.12 ENSMUSG00000032358 ENSMUST00000098546 Fam83b protein_coding Interval_136322 chr6 53017360 53018121 + 0 NA intron (ENSMUSG00000063568.11, intron 1 of 4) protein_coding-intron (ENSMUSG00000063568.11, intron 1 of 4) -7208 ENSMUSG00000089209.1 ENSMUSG00000089209 ENSMUST00000158584 Gm26215 scaRNA Interval_49266 chr13 109944777 109945019 + 0 NA intron (ENSMUSG00000021699.17, intron 12 of 15) protein_coding-intron (ENSMUSG00000021699.17, intron 11 of 14) 41089 ENSMUSG00000084651.1 ENSMUSG00000084651 ENSMUST00000122702 Mir1904 miRNA Interval_20389 chr10 117273623 117273971 + 0 NA Intergenic Intergenic 8524 ENSMUSG00000069516.8 ENSMUSG00000069516 ENSMUST00000092163 Lyz2 protein_coding Interval_160403 chr8 109012639 109012997 + 0 NA Intergenic Intergenic -62427 ENSMUSG00000097393.8 ENSMUSG00000097393 ENSMUST00000181098 D030068K23Rik lincRNA Interval_157228 chr8 68244321 68244943 + 0 NA Intergenic Intergenic -32605 ENSMUSG00000030465.19 ENSMUSG00000030465 ENSMUST00000178529 Psd3 protein_coding Interval_151337 chr7 121200945 121201248 + 0 NA Intergenic Intergenic 22898 ENSMUSG00000108502.1 ENSMUSG00000108502 ENSMUST00000206527 Gm9240 processed_pseudogene Interval_60900 chr15 77716267 77716599 + 0 NA intron (ENSMUSG00000071716.5, intron 4 of 4) protein_coding-intron (ENSMUSG00000071716.5, intron 4 of 4) 6416 ENSMUSG00000116162.1 ENSMUSG00000116162 ENSMUST00000230236 Gm36329 antisense Interval_59032 chr15 41871795 41872203 + 0 NA Intergenic Intergenic -2279 ENSMUSG00000042895.6 ENSMUSG00000042895 ENSMUST00000054742 Abra protein_coding Interval_81653 chr18 62869826 62870369 + 0 NA Intergenic Intergenic 52004 ENSMUSG00000117671.1 ENSMUSG00000117671 ENSMUST00000237856 Gm50128 bidirectional_promoter_lncRNA Interval_102827 chr3 31620602 31621547 + 0 NA Intergenic Intergenic 69511 ENSMUSG00000103499.5 ENSMUSG00000103499 ENSMUST00000192046 Gm6558 transcribed_unprocessed_pseudogene Interval_126780 chr5 92889774 92890511 + 0 NA intron (ENSMUSG00000029381.16, intron 1 of 9) protein_coding-intron (ENSMUSG00000029381.16, intron 1 of 9) 33671 ENSMUSG00000029381.16 ENSMUSG00000029381 ENSMUST00000172752 Shroom3 protein_coding Interval_48719 chr13 102105912 102106746 + 0 NA Intergenic Intergenic 9706 ENSMUSG00000102542.1 ENSMUSG00000102542 ENSMUST00000195109 Gm38133 TEC Interval_29545 chr11 84813682 84814045 + 0 NA TTS (ENSMUSG00000018405.7) protein_coding-TTS (ENSMUSG00000018405.7) 1527 ENSMUSG00000018405.7 ENSMUSG00000018405 ENSMUST00000139076 Mrm1 protein_coding Interval_53460 chr14 57671311 57671478 + 0 NA intron (ENSMUSG00000114942.1, intron 6 of 8) protein_coding-intron (ENSMUSG00000114942.1, intron 6 of 8) -5964 ENSMUSG00000021952.16 ENSMUSG00000021952 ENSMUST00000173638 Xpo4 protein_coding Interval_121403 chr4 155563315 155564620 + 0 NA promoter-TSS (ENSMUSG00000029063.16) protein_coding-promoter-TSS (ENSMUSG00000029063.16) -22810 ENSMUSG00000029063.16 ENSMUSG00000029063 ENSMUST00000152297 Nadk protein_coding Interval_70989 chr17 17022488 17023574 + 0 NA Intergenic Intergenic -41082 ENSMUSG00000096696.1 ENSMUSG00000096696 ENSMUST00000127027 Zfp960 protein_coding Interval_78623 chr18 15534240 15534931 + 0 NA intron (ENSMUSG00000047161.12, intron 3 of 5) protein_coding-intron (ENSMUSG00000047161.12, intron 2 of 3) 131498 ENSMUSG00000117541.1 ENSMUSG00000117541 ENSMUST00000234487 Gm50048 antisense Interval_163717 chr9 24832478 24832893 + 0 NA Intergenic Intergenic -5340 ENSMUSG00000111507.1 ENSMUSG00000111507 ENSMUST00000214455 Amd-ps6 processed_pseudogene Interval_19858 chr10 110546458 110547479 + 0 NA Intergenic Intergenic -49298 ENSMUSG00000112398.1 ENSMUSG00000112398 ENSMUST00000219459 9230102K24Rik lincRNA Interval_42982 chr13 22049738 22051644 + 0 NA exon (ENSMUSG00000114817.1, exon 1 of 1) TEC-exon (ENSMUSG00000114817.1, exon 1 of 1) 1177 ENSMUSG00000114817.1 ENSMUSG00000114817 ENSMUST00000225374 Gm48356 TEC Interval_28476 chr11 76247354 76247757 + 0 NA intron (ENSMUSG00000038046.4, intron 3 of 3) protein_coding-intron (ENSMUSG00000038046.4, intron 3 of 3) -1657 ENSMUSG00000038046.4 ENSMUSG00000038046 ENSMUST00000155526 Mrm3 protein_coding Interval_82316 chr18 70580724 70582100 + 0 NA intron (ENSMUSG00000024513.16, intron 1 of 5) protein_coding-intron (ENSMUSG00000024513.16, intron 2 of 6) -11843 ENSMUSG00000024513.16 ENSMUSG00000024513 ENSMUST00000128555 Mbd2 protein_coding Interval_54551 chr14 70628864 70629687 + 0 NA promoter-TSS (ENSMUSG00000022099.17) protein_coding-promoter-TSS (ENSMUSG00000022099.17) -276 ENSMUSG00000022099.17 ENSMUSG00000022099 ENSMUST00000226543 Dmtn protein_coding Interval_166804 chr9 62803187 62803663 + 0 NA intron (ENSMUSG00000032244.9, intron 1 of 1) protein_coding-intron (ENSMUSG00000032244.9, intron 1 of 1) 8509 ENSMUSG00000032244.9 ENSMUSG00000032244 ENSMUST00000034775 Fem1b protein_coding Interval_26548 chr11 58766516 58766803 + 0 NA Intergenic Intergenic -6529 ENSMUSG00000056959.6 ENSMUSG00000056959 ENSMUST00000081533 Olfr315 protein_coding Interval_160789 chr8 112289356 112290028 + 0 NA Intergenic Intergenic -52726 ENSMUSG00000110435.1 ENSMUSG00000110435 ENSMUST00000212314 Gm3635 processed_pseudogene Interval_34227 chr11 121434534 121435381 + 0 NA promoter-TSS (ENSMUSG00000025175.12) protein_coding-promoter-TSS (ENSMUSG00000025175.12) -11 ENSMUSG00000025175.12 ENSMUSG00000025175 ENSMUST00000103014 Fn3k protein_coding Interval_107700 chr3 111370527 111371958 + 0 NA Intergenic Intergenic -48385 ENSMUSG00000106100.1 ENSMUSG00000106100 ENSMUST00000199881 Gm9314 processed_pseudogene Interval_159642 chr8 95967955 95968640 + 0 NA Intergenic Intergenic 46768 ENSMUSG00000110506.1 ENSMUSG00000110506 ENSMUST00000212919 Gm8637 processed_pseudogene Interval_93540 chr2 73919481 73919703 + 0 NA Intergenic Intergenic -8301 ENSMUSG00000018770.9 ENSMUSG00000018770 ENSMUST00000155474 Atp5g3 protein_coding Interval_11404 chr1 181728861 181729501 + 0 NA intron (ENSMUSG00000047369.17, intron 53 of 84) protein_coding-intron (ENSMUSG00000047369.17, intron 52 of 83) -38939 ENSMUSG00000103100.1 ENSMUSG00000103100 ENSMUST00000194607 Gm37664 TEC Interval_22889 chr11 17135422 17135814 + 0 NA Intergenic Intergenic -39974 ENSMUSG00000082099.1 ENSMUSG00000082099 ENSMUST00000121971 Gm12013 processed_pseudogene Interval_121200 chr4 153999973 154000490 + 0 NA intron (ENSMUSG00000039523.16, intron 9 of 14) protein_coding-intron (ENSMUSG00000039523.16, intron 18 of 21) -11500 ENSMUSG00000029028.14 ENSMUSG00000029028 ENSMUST00000163672 Lrrc47 protein_coding Interval_50345 chr14 11955395 11955635 + 0 NA intron (ENSMUSG00000021745.14, intron 3 of 3) protein_coding-intron (ENSMUSG00000021745.14, intron 3 of 29) 25693 ENSMUSG00000085883.2 ENSMUSG00000085883 ENSMUST00000151564 Gm3848 antisense Interval_32314 chr11 106841721 106842190 + 0 NA intron (ENSMUSG00000018363.16, intron 11 of 19) protein_coding-intron (ENSMUSG00000018363.16, intron 10 of 18) 24121 ENSMUSG00000018372.13 ENSMUSG00000018372 ENSMUST00000124898 Cep95 protein_coding Interval_43458 chr13 31344180 31344473 + 0 NA Intergenic Intergenic -8654 ENSMUSG00000088693.1 ENSMUSG00000088693 ENSMUST00000158068 Gm22330 snoRNA Interval_52210 chr14 40653218 40654135 + 0 NA Intergenic Intergenic -93551 ENSMUSG00000114933.1 ENSMUSG00000114933 ENSMUST00000225171 Gm48040 processed_pseudogene Interval_109098 chr3 135725614 135726770 + 0 NA Intergenic Intergenic -71626 ENSMUSG00000106149.1 ENSMUSG00000106149 ENSMUST00000196513 Gm43430 TEC Interval_45416 chr13 55011969 55013629 + 0 NA intron (ENSMUSG00000025877.14, intron 7 of 17) protein_coding-intron (ENSMUSG00000025877.14, intron 8 of 18) 8435 ENSMUSG00000025877.14 ENSMUSG00000025877 ENSMUST00000135983 Hk3 protein_coding Interval_106033 chr3 91041917 91042344 + 0 NA Intergenic Intergenic 2557 ENSMUSG00000105919.1 ENSMUSG00000105919 ENSMUST00000199715 Gm7166 processed_pseudogene Interval_134202 chr6 22752297 22753233 + 0 NA Intergenic Intergenic -6634 ENSMUSG00000107303.1 ENSMUSG00000107303 ENSMUST00000202509 Gm18861 processed_pseudogene Interval_13794 chr10 22548975 22549347 + 0 NA Intergenic Intergenic -95641 ENSMUSG00000097473.1 ENSMUSG00000097473 ENSMUST00000180890 Gm26585 processed_pseudogene Interval_74134 chr17 46704491 46705665 + 0 NA promoter-TSS (ENSMUSG00000059409.9) protein_coding-promoter-TSS (ENSMUSG00000059409.9) 33 ENSMUSG00000059409.9 ENSMUSG00000059409 ENSMUST00000233757 Ppp2r5d protein_coding Interval_141216 chr6 125679962 125680546 + 0 NA intron (ENSMUSG00000001930.17, intron 14 of 18) protein_coding-intron (ENSMUSG00000001930.17, intron 47 of 51) -30372 ENSMUSG00000038115.16 ENSMUSG00000038115 ENSMUST00000159984 Ano2 protein_coding Interval_128278 chr5 112245287 112245695 + 0 NA Intergenic Intergenic 7027 ENSMUSG00000066975.12 ENSMUSG00000066975 ENSMUST00000086629 Cryba4 protein_coding Interval_38841 chr12 83302237 83302783 + 0 NA intron (ENSMUSG00000021221.15, intron 6 of 10) protein_coding-intron (ENSMUSG00000021221.15, intron 4 of 6) 180296 ENSMUSG00000103387.1 ENSMUSG00000103387 ENSMUST00000192978 1700030I03Rik TEC Interval_138974 chr6 93937866 93939428 + 0 NA intron (ENSMUSG00000045095.16, intron 2 of 24) protein_coding-intron (ENSMUSG00000045095.16, intron 2 of 21) -26143 ENSMUSG00000045095.16 ENSMUSG00000045095 ENSMUST00000203034 Magi1 protein_coding Interval_123435 chr5 32510815 32511531 + 0 NA intron (ENSMUSG00000085234.1, intron 2 of 3) antisense-intron (ENSMUSG00000085234.1, intron 2 of 3) -31288 ENSMUSG00000080753.1 ENSMUSG00000080753 ENSMUST00000118396 Gm15613 processed_pseudogene Interval_147816 chr7 73740002 73741345 + 0 NA exon (ENSMUSG00000078670.3, exon 1 of 3) protein_coding-exon (ENSMUSG00000078670.3, exon 1 of 3) 351 ENSMUSG00000091890.2 ENSMUSG00000091890 ENSMUST00000169090 A830073O21Rik TEC Interval_23834 chr11 26864068 26864334 + 0 NA Intergenic Intergenic -7291 ENSMUSG00000080987.1 ENSMUSG00000080987 ENSMUST00000117382 Gm12073 processed_pseudogene Interval_129548 chr5 120849546 120850176 + 0 NA intron (ENSMUSG00000053765.4, intron 1 of 3) protein_coding-intron (ENSMUSG00000053765.4, intron 2 of 5) 1489 ENSMUSG00000053765.4 ENSMUSG00000053765 ENSMUST00000123431 Oas1f protein_coding Interval_4926 chr1 82702792 82703868 + 0 NA intron (ENSMUSG00000079465.8, intron 43 of 51) protein_coding-intron (ENSMUSG00000079465.8, intron 43 of 51) -11974 ENSMUSG00000079465.8 ENSMUSG00000079465 ENSMUST00000152664 Col4a3 protein_coding Interval_89751 chr2 25222090 25222327 + 0 NA TTS (ENSMUSG00000026969.3) protein_coding-TTS (ENSMUSG00000026969.3) 850 ENSMUSG00000026969.3 ENSMUSG00000026969 ENSMUST00000139988 Fam166a protein_coding Interval_170752 chr9 110531929 110533237 + 0 NA promoter-TSS (ENSMUSG00000044791.16) protein_coding-promoter-TSS (ENSMUSG00000044791.16) -10628 ENSMUSG00000104983.1 ENSMUSG00000104983 ENSMUST00000199595 Gm42763 TEC Interval_155920 chr8 41039483 41039696 + 0 NA promoter-TSS (ENSMUSG00000086773.1) antisense-promoter-TSS (ENSMUSG00000086773.1) -167 ENSMUSG00000086773.1 ENSMUSG00000086773 ENSMUST00000148357 Gm16192 antisense Interval_154743 chr8 23033581 23034424 + 0 NA intron (ENSMUSG00000031543.18, intron 1 of 43) protein_coding-intron (ENSMUSG00000031543.18, intron 1 of 42) 68094 ENSMUSG00000106605.1 ENSMUSG00000106605 ENSMUST00000197671 Gm44365 miRNA Interval_146674 chr7 49336217 49336872 + 0 NA intron (ENSMUSG00000052512.17, intron 1 of 6) protein_coding-intron (ENSMUSG00000052512.17, intron 1 of 37) -6930 ENSMUSG00000052512.17 ENSMUSG00000052512 ENSMUST00000183715 Nav2 protein_coding Interval_149001 chr7 91310379 91311447 + 0 NA intron (ENSMUSG00000052572.19, intron 1 of 13) protein_coding-intron (ENSMUSG00000052572.19, intron 1 of 22) 6218 ENSMUSG00000109353.1 ENSMUSG00000109353 ENSMUST00000207937 Gm45183 TEC Interval_113512 chr4 55449922 55451360 + 0 NA TTS (ENSMUSG00000086346.1) lincRNA-TTS (ENSMUSG00000086346.1) 15173 ENSMUSG00000086346.1 ENSMUSG00000086346 ENSMUST00000152190 Gm12510 lincRNA Interval_23854 chr11 27146946 27147217 + 0 NA Intergenic Intergenic -59946 ENSMUSG00000088654.1 ENSMUSG00000088654 ENSMUST00000158029 Gm24850 snoRNA Interval_141615 chr6 131360631 131361349 + 0 NA Intergenic Intergenic -7393 ENSMUSG00000032899.14 ENSMUSG00000032899 ENSMUST00000204371 Styk1 protein_coding Interval_39095 chr12 85011720 85012719 + 0 NA intron (ENSMUSG00000021244.15, intron 1 of 19) protein_coding-intron (ENSMUSG00000021244.15, intron 1 of 20) -30008 ENSMUSG00000021244.15 ENSMUSG00000021244 ENSMUST00000166605 Ylpm1 protein_coding Interval_45600 chr13 56178377 56178655 + 0 NA intron (ENSMUSG00000049625.6, intron 1 of 2) protein_coding-intron (ENSMUSG00000049625.6, intron 1 of 2) 369 ENSMUSG00000049625.6 ENSMUSG00000049625 ENSMUST00000225063 Tifab protein_coding Interval_22188 chr11 6980498 6981327 + 0 NA Intergenic Intergenic -118608 ENSMUSG00000082333.1 ENSMUSG00000082333 ENSMUST00000118142 Gm11984 processed_pseudogene Interval_26195 chr11 55012689 55014197 + 0 NA intron (ENSMUSG00000018340.13, intron 3 of 19) protein_coding-intron (ENSMUSG00000018340.13, intron 3 of 24) 19972 ENSMUSG00000018340.13 ENSMUSG00000018340 ENSMUST00000148298 Anxa6 protein_coding Interval_48197 chr13 97123473 97123660 + 0 NA intron (ENSMUSG00000041817.14, intron 12 of 12) protein_coding-intron (ENSMUSG00000041817.14, intron 12 of 12) 14286 ENSMUSG00000060739.8 ENSMUSG00000060739 ENSMUST00000224980 Nsa2 protein_coding Interval_85831 chr19 32224933 32225943 + 0 NA intron (ENSMUSG00000040451.18, intron 2 of 10) protein_coding-intron (ENSMUSG00000040451.18, intron 4 of 9) -16165 ENSMUSG00000118064.1 ENSMUSG00000118064 ENSMUST00000235377 Gm50210 sense_intronic Interval_41407 chr12 113471298 113471801 + 0 NA promoter-TSS (ENSMUSG00000095444.1) IG_D_gene-promoter-TSS (ENSMUSG00000095444.1) -839 ENSMUSG00000095444.1 ENSMUSG00000095444 ENSMUST00000179560 Ighd2-4 IG_D_gene Interval_6360 chr1 106277553 106279443 + 0 NA intron (ENSMUSG00000044340.7, intron 1 of 16) protein_coding-intron (ENSMUSG00000044340.7, intron 1 of 16) -2927 ENSMUSG00000044340.7 ENSMUSG00000044340 ENSMUST00000124895 Phlpp1 protein_coding Interval_142561 chr6 143279018 143279535 + 0 NA intron (ENSMUSG00000072679.10, intron 4 of 4) lincRNA-intron (ENSMUSG00000072679.10, intron 3 of 3) 33383 ENSMUSG00000072679.10 ENSMUSG00000072679 ENSMUST00000160951 D6Ertd474e lincRNA Interval_29985 chr11 88547377 88547708 + 0 NA intron (ENSMUSG00000069769.13, intron 1 of 5) protein_coding-intron (ENSMUSG00000069769.13, intron 6 of 13) 42605 ENSMUSG00000069769.13 ENSMUSG00000069769 ENSMUST00000126293 Msi2 protein_coding Interval_49676 chr13 113929827 113930517 + 0 NA intron (ENSMUSG00000042348.10, intron 2 of 3) protein_coding-intron (ENSMUSG00000042348.10, intron 2 of 4) 135579 ENSMUSG00000042348.10 ENSMUSG00000042348 ENSMUST00000224068 Arl15 protein_coding Interval_121970 chr5 12771949 12772277 + 0 NA Intergenic Intergenic -101385 ENSMUSG00000105237.1 ENSMUSG00000105237 ENSMUST00000197223 Gm42580 processed_pseudogene Interval_55344 chr14 84156100 84158175 + 0 NA Intergenic Intergenic -30263 ENSMUSG00000115612.1 ENSMUSG00000115612 ENSMUST00000228759 Gm29800 processed_pseudogene Interval_79677 chr18 34456312 34456999 + 0 NA intron (ENSMUSG00000036501.7, intron 5 of 7) protein_coding-intron (ENSMUSG00000036501.7, intron 12 of 20) 41248 ENSMUSG00000036501.7 ENSMUSG00000036501 ENSMUST00000236598 Fam13b protein_coding Interval_164763 chr9 41384477 41384727 + 0 NA intron (ENSMUSG00000074415.14, intron 1 of 2) processed_transcript-intron (ENSMUSG00000074415.14, intron 1 of 4) 8292 ENSMUSG00000074415.14 ENSMUSG00000074415 ENSMUST00000188412 Mir100hg processed_transcript Interval_78301 chr18 11838999 11840896 + 0 NA promoter-TSS (ENSMUSG00000097440.2) antisense-promoter-TSS (ENSMUSG00000097440.2) 491 ENSMUSG00000084565.1 ENSMUSG00000084565 ENSMUST00000122616 Mir1901 miRNA Interval_107047 chr3 103145369 103147178 + 0 NA intron (ENSMUSG00000007379.15, intron 2 of 14) protein_coding-intron (ENSMUSG00000007379.15, intron 5 of 11) -2891 ENSMUSG00000007379.15 ENSMUSG00000007379 ENSMUST00000174486 Dennd2c protein_coding Interval_54169 chr14 65888723 65891291 + 0 NA Intergenic Intergenic 52647 ENSMUSG00000022035.6 ENSMUSG00000022035 ENSMUST00000226027 Ccdc25 protein_coding Interval_140559 chr6 119514614 119514993 + 0 NA intron (ENSMUSG00000030170.14, intron 1 of 4) protein_coding-intron (ENSMUSG00000030170.14, intron 1 of 4) 29544 ENSMUSG00000030170.14 ENSMUSG00000030170 ENSMUST00000119369 Wnt5b protein_coding Interval_134951 chr6 34073741 34075194 + 0 NA intron (ENSMUSG00000056215.13, intron 10 of 15) protein_coding-intron (ENSMUSG00000056215.13, intron 10 of 19) 45019 ENSMUSG00000056215.13 ENSMUSG00000056215 ENSMUST00000141078 Lrguk protein_coding Interval_4224 chr1 71738564 71739738 + 0 NA Intergenic Intergenic -24227 ENSMUSG00000100319.1 ENSMUSG00000100319 ENSMUST00000191412 Gm5256 processed_pseudogene Interval_120628 chr4 149765303 149765513 + 0 NA intron (ENSMUSG00000028982.9, intron 1 of 6) protein_coding-intron (ENSMUSG00000028982.9, intron 1 of 6) 8869 ENSMUSG00000028982.9 ENSMUSG00000028982 ENSMUST00000105686 Slc25a33 protein_coding Interval_5744 chr1 91390327 91390746 + 0 NA exon (ENSMUSG00000026309.14, exon 3 of 3) protein_coding-exon (ENSMUSG00000026309.14, exon 3 of 3) 8279 ENSMUSG00000026309.14 ENSMUSG00000026309 ENSMUST00000189651 Ilkap protein_coding Interval_120848 chr4 151007064 151007423 + 0 NA intron (ENSMUSG00000028957.12, intron 6 of 6) protein_coding-intron (ENSMUSG00000028957.12, intron 20 of 20) 10146 ENSMUSG00000028963.1 ENSMUSG00000028963 ENSMUST00000030803 Uts2 protein_coding Interval_85094 chr19 22753599 22754202 + 0 NA intron (ENSMUSG00000052387.16, intron 7 of 7) protein_coding-intron (ENSMUSG00000052387.16, intron 6 of 26) 3295 ENSMUSG00000065507.3 ENSMUSG00000065507 ENSMUST00000083573 Mir204 miRNA Interval_9831 chr1 162749528 162749714 + 0 NA Intergenic Intergenic -18900 ENSMUSG00000040225.15 ENSMUSG00000040225 ENSMUST00000183286 Prrc2c protein_coding Interval_17647 chr10 78457693 78458355 + 0 NA intron (ENSMUSG00000032788.15, intron 1 of 10) protein_coding-intron (ENSMUSG00000032788.15, intron 1 of 10) -9778 ENSMUSG00000032788.15 ENSMUSG00000032788 ENSMUST00000218245 Pdxk protein_coding Interval_3599 chr1 59892488 59893844 + 0 NA Intergenic Intergenic -5477 ENSMUSG00000103131.1 ENSMUSG00000103131 ENSMUST00000193096 Gm37977 TEC Interval_173853 chrX 105974263 105974598 + 0 NA intron (ENSMUSG00000031232.17, intron 8 of 9) protein_coding-intron (ENSMUSG00000031232.17, intron 8 of 10) 37469 ENSMUSG00000031232.17 ENSMUSG00000031232 ENSMUST00000139421 Magt1 protein_coding Interval_67707 chr16 56115413 56116903 + 0 NA intron (ENSMUSG00000052917.15, intron 4 of 5) protein_coding-intron (ENSMUSG00000052917.15, intron 5 of 6) -19319 ENSMUSG00000116999.1 ENSMUSG00000116999 ENSMUST00000232486 Gm18723 processed_pseudogene Interval_42207 chr13 9900286 9900584 + 0 NA intron (ENSMUSG00000046159.16, intron 4 of 4) protein_coding-intron (ENSMUSG00000046159.16, intron 4 of 4) 7525 ENSMUSG00000113146.1 ENSMUSG00000113146 ENSMUST00000221304 Gm47406 processed_pseudogene Interval_166320 chr9 58295893 58296757 + 0 NA intron (ENSMUSG00000032334.10, intron 2 of 6) protein_coding-intron (ENSMUSG00000032334.10, intron 2 of 6) 16861 ENSMUSG00000032334.10 ENSMUSG00000032334 ENSMUST00000061799 Loxl1 protein_coding Interval_91755 chr2 49284287 49284462 + 0 NA intron (ENSMUSG00000036792.12, intron 1 of 3) protein_coding-intron (ENSMUSG00000036792.12, intron 7 of 9) -23781 ENSMUSG00000081272.1 ENSMUSG00000081272 ENSMUST00000119733 Ap2m1-ps processed_pseudogene Interval_3507 chr1 59150497 59150827 + 0 NA promoter-TSS (ENSMUSG00000079550.9) protein_coding-promoter-TSS (ENSMUSG00000079550.9) -385 ENSMUSG00000101586.1 ENSMUSG00000101586 ENSMUST00000190598 Gm29017 antisense Interval_131508 chr5 137640789 137641866 + 0 NA promoter-TSS (ENSMUSG00000079165.10) protein_coding-promoter-TSS (ENSMUSG00000079165.10) -7 ENSMUSG00000079165.10 ENSMUSG00000079165 ENSMUST00000177038 Sap25 protein_coding Interval_33472 chr11 116719986 116721011 + 0 NA Intergenic Intergenic -25889 ENSMUSG00000057286.6 ENSMUSG00000057286 ENSMUST00000145441 St6galnac2 protein_coding Interval_31609 chr11 101682107 101682328 + 0 NA Intergenic Intergenic 16676 ENSMUSG00000034936.2 ENSMUSG00000034936 ENSMUST00000039388 Arl4d protein_coding Interval_17729 chr10 79779893 79781159 + 0 NA promoter-TSS (ENSMUSG00000020325.10) protein_coding-promoter-TSS (ENSMUSG00000020325.10) 3234 ENSMUSG00000020325.10 ENSMUSG00000020325 ENSMUST00000168798 Fstl3 protein_coding Interval_127008 chr5 99464299 99464630 + 0 NA intron (ENSMUSG00000089809.9, intron 3 of 16) protein_coding-intron (ENSMUSG00000089809.9, intron 2 of 3) -43925 ENSMUSG00000104753.1 ENSMUSG00000104753 ENSMUST00000196037 Gm35172 lincRNA Interval_81149 chr18 54987471 54988056 + 0 NA exon (ENSMUSG00000052713.9, exon 2 of 10) protein_coding-exon (ENSMUSG00000052713.9, exon 2 of 10) -2502 ENSMUSG00000096948.2 ENSMUSG00000096948 ENSMUST00000181765 Gm4221 antisense Interval_119242 chr4 136415416 136415769 + 0 NA Intergenic Intergenic -9020 ENSMUSG00000070687.11 ENSMUSG00000070687 ENSMUST00000133818 Htr1d protein_coding Interval_122000 chr5 13558663 13558985 + 0 NA intron (ENSMUSG00000028883.17, intron 10 of 17) protein_coding-intron (ENSMUSG00000028883.17, intron 9 of 16) 10130 ENSMUSG00000104626.1 ENSMUSG00000104626 ENSMUST00000197552 Gm42675 TEC Interval_50724 chr14 18574486 18574688 + 0 NA intron (ENSMUSG00000058317.12, intron 3 of 3) protein_coding-intron (ENSMUSG00000058317.12, intron 4 of 4) -29455 ENSMUSG00000114529.1 ENSMUSG00000114529 ENSMUST00000224515 Gm4939 processed_pseudogene Interval_60996 chr15 78586939 78588061 + 0 NA Intergenic Intergenic -5884 ENSMUSG00000116097.1 ENSMUSG00000116097 ENSMUST00000229702 Gm36738 lincRNA Interval_73783 chr17 43606689 43607254 + 0 NA intron (ENSMUSG00000023913.17, intron 10 of 10) protein_coding-intron (ENSMUSG00000023913.17, intron 9 of 11) -14539 ENSMUSG00000090307.7 ENSMUSG00000090307 ENSMUST00000164150 1700071M16Rik antisense Interval_43712 chr13 35665632 35665855 + 0 NA intron (ENSMUSG00000059288.14, intron 1 of 5) protein_coding-intron (ENSMUSG00000059288.14, intron 1 of 9) 3608 ENSMUSG00000065178.1 ENSMUSG00000065178 ENSMUST00000083244 Gm22126 snRNA Interval_149149 chr7 95171145 95171874 + 0 NA promoter-TSS (ENSMUSG00000084636.1) misc_RNA-promoter-TSS (ENSMUSG00000084636.1) -355 ENSMUSG00000084636.1 ENSMUSG00000084636 ENSMUST00000122687 Gm23884 misc_RNA Interval_71368 chr17 22729304 22729500 + 0 NA Intergenic Intergenic -5561 ENSMUSG00000098210.1 ENSMUSG00000098210 ENSMUST00000183060 Gm5224 processed_pseudogene Interval_69009 chr16 90098235 90098784 + 0 NA intron (ENSMUSG00000002489.16, intron 1 of 11) protein_coding-intron (ENSMUSG00000002489.16, intron 1 of 11) 8526 ENSMUSG00000116536.1 ENSMUSG00000116536 ENSMUST00000232386 Gm2805 processed_pseudogene Interval_72506 chr17 30274146 30274355 + 0 NA intron (ENSMUSG00000062202.14, intron 4 of 4) protein_coding-intron (ENSMUSG00000062202.14, intron 9 of 11) -36829 ENSMUSG00000089222.1 ENSMUSG00000089222 ENSMUST00000158597 Gm25049 snRNA Interval_101279 chr2 180149531 180149845 + 0 NA exon (ENSMUSG00000039050.8, exon 1 of 2) protein_coding-exon (ENSMUSG00000039050.8, exon 1 of 2) -21907 ENSMUSG00000039041.15 ENSMUSG00000039041 ENSMUST00000152850 Adrm1 protein_coding Interval_95821 chr2 116923419 116923875 + 0 NA Intergenic Intergenic 23453 ENSMUSG00000085316.1 ENSMUSG00000085316 ENSMUST00000155323 D330050G23Rik lincRNA Interval_72758 chr17 31981908 31983293 + 0 NA intron (ENSMUSG00000002076.12, intron 3 of 3) protein_coding-intron (ENSMUSG00000002076.12, intron 7 of 7) 32066 ENSMUSG00000091548.2 ENSMUSG00000091548 ENSMUST00000171455 Gm17572 processed_pseudogene Interval_171704 chr9 120319027 120320183 + 0 NA intron (ENSMUSG00000041794.13, intron 1 of 16) protein_coding-intron (ENSMUSG00000041794.13, intron 1 of 16) 3277 ENSMUSG00000083772.1 ENSMUSG00000083772 ENSMUST00000121130 Gm15566 processed_pseudogene Interval_26184 chr11 54953946 54954394 + 0 NA intron (ENSMUSG00000020400.17, intron 1 of 17) protein_coding-intron (ENSMUSG00000020400.17, intron 1 of 17) 1877 ENSMUSG00000020400.17 ENSMUSG00000020400 ENSMUST00000132776 Tnip1 protein_coding Interval_13952 chr10 24960968 24961536 + 0 NA Intergenic Intergenic 33633 ENSMUSG00000112758.1 ENSMUSG00000112758 ENSMUST00000219852 Gm36172 bidirectional_promoter_lncRNA Interval_150508 chr7 111467870 111468139 + 0 NA Intergenic Intergenic -80672 ENSMUSG00000109867.1 ENSMUSG00000109867 ENSMUST00000209530 Gm5338 processed_pseudogene Interval_120114 chr4 141928271 141929687 + 0 NA intron (ENSMUSG00000051435.11, intron 6 of 6) protein_coding-intron (ENSMUSG00000051435.11, intron 2 of 7) -6553 ENSMUSG00000051435.11 ENSMUSG00000051435 ENSMUST00000125293 Fhad1 protein_coding Interval_24601 chr11 35085794 35086386 + 0 NA Intergenic Intergenic -85539 ENSMUSG00000056427.10 ENSMUSG00000056427 ENSMUST00000124438 Slit3 protein_coding Interval_79008 chr18 23901124 23901633 + 0 NA Intergenic Intergenic -42519 ENSMUSG00000117504.1 ENSMUSG00000117504 ENSMUST00000235052 Gm46611 processed_pseudogene Interval_142541 chr6 143164625 143165108 + 0 NA Intergenic Intergenic -2388 ENSMUSG00000030275.6 ENSMUSG00000030275 ENSMUST00000205256 Etnk1 protein_coding Interval_147174 chr7 64052356 64052974 + 0 NA Intergenic Intergenic -4937 ENSMUSG00000108620.1 ENSMUSG00000108620 ENSMUST00000206468 Gm20670 lincRNA Interval_22180 chr11 6865518 6865916 + 0 NA Intergenic Intergenic -3413 ENSMUSG00000082333.1 ENSMUSG00000082333 ENSMUST00000118142 Gm11984 processed_pseudogene Interval_14524 chr10 34879259 34879517 + 0 NA intron (ENSMUSG00000111042.1, intron 1 of 3) transcribed_processed_pseudogene-intron (ENSMUSG00000111042.1, intron 1 of 3) -2020 ENSMUSG00000111042.1 ENSMUSG00000111042 ENSMUST00000215855 Gm18252 transcribed_processed_pseudogene Interval_21776 chr11 4288957 4289388 + 0 NA Intergenic Intergenic 3712 ENSMUSG00000085512.1 ENSMUSG00000085512 ENSMUST00000127224 Gm11958 lincRNA Interval_174033 chrX 130596427 130597852 + 0 NA Intergenic Intergenic -35242 ENSMUSG00000083024.1 ENSMUSG00000083024 ENSMUST00000121102 Gm14982 processed_pseudogene Interval_99352 chr2 160027707 160028168 + 0 NA intron (ENSMUSG00000086653.1, intron 3 of 3) lincRNA-intron (ENSMUSG00000086653.1, intron 3 of 3) 11284 ENSMUSG00000086653.1 ENSMUSG00000086653 ENSMUST00000140319 9130015L21Rik lincRNA Interval_130124 chr5 124416397 124417512 + 0 NA intron (ENSMUSG00000038095.15, intron 1 of 17) protein_coding-intron (ENSMUSG00000038095.15, intron 1 of 31) 8635 ENSMUSG00000099144.1 ENSMUSG00000099144 ENSMUST00000184923 Gm27486 miRNA Interval_60889 chr15 77590793 77591962 + 0 NA intron (ENSMUSG00000050014.8, intron 2 of 3) protein_coding-intron (ENSMUSG00000050014.8, intron 2 of 3) 4748 ENSMUSG00000050014.8 ENSMUSG00000050014 ENSMUST00000089465 Apol10b protein_coding Interval_173583 chrX 99975010 99976572 + 0 NA promoter-TSS (ENSMUSG00000059327.9) protein_coding-promoter-TSS (ENSMUSG00000059327.9) 154770 ENSMUSG00000071719.2 ENSMUSG00000071719 ENSMUST00000096363 Tmem28 protein_coding Interval_43320 chr13 29125688 29126620 + 0 NA Intergenic Intergenic 4604 ENSMUSG00000082730.2 ENSMUSG00000082730 ENSMUST00000121672 Gm11363 processed_pseudogene Interval_124454 chr5 48234732 48234947 + 0 NA intron (ENSMUSG00000031558.15, intron 19 of 38) protein_coding-intron (ENSMUSG00000031558.15, intron 17 of 35) -10363 ENSMUSG00000031558.15 ENSMUSG00000031558 ENSMUST00000173686 Slit2 protein_coding Interval_106642 chr3 98024185 98025541 + 0 NA intron (ENSMUSG00000027878.11, intron 1 of 7) protein_coding-intron (ENSMUSG00000027878.11, intron 1 of 33) -5824 ENSMUSG00000105728.1 ENSMUSG00000105728 ENSMUST00000199630 Gm42819 TEC Interval_115039 chr4 88785421 88786009 + 0 NA promoter-TSS (ENSMUSG00000099545.1) protein_coding-promoter-TSS (ENSMUSG00000099545.1) 6 ENSMUSG00000099545.1 ENSMUSG00000099545 ENSMUST00000179372 Gm13276 protein_coding Interval_122101 chr5 17011364 17011575 + 0 NA Intergenic Intergenic 30433 ENSMUSG00000105706.1 ENSMUSG00000105706 ENSMUST00000197388 Gm42855 processed_pseudogene Interval_92654 chr2 62042629 62042818 + 0 NA Intergenic Intergenic -72051 ENSMUSG00000083018.1 ENSMUSG00000083018 ENSMUST00000121668 Gm13555 processed_pseudogene Interval_55757 chr14 99632320 99632695 + 0 NA Intergenic Intergenic -1841 ENSMUSG00000115366.1 ENSMUSG00000115366 ENSMUST00000228944 Gm9298 processed_pseudogene Interval_36575 chr12 50728922 50729570 + 0 NA Intergenic Intergenic -23851 ENSMUSG00000112372.1 ENSMUSG00000112372 ENSMUST00000220240 Gm48779 lincRNA Interval_49606 chr13 113477505 113478211 + 0 NA intron (ENSMUSG00000114790.1, intron 3 of 6) lincRNA-intron (ENSMUSG00000114790.1, intron 3 of 6) 2385 ENSMUSG00000114659.1 ENSMUSG00000114659 ENSMUST00000223591 Gm31191 processed_pseudogene Interval_128260 chr5 112120874 112121359 + 0 NA Intergenic Intergenic -35121 ENSMUSG00000104538.1 ENSMUSG00000104538 ENSMUST00000197688 1700016B01Rik lincRNA Interval_154380 chr8 15138470 15139143 + 0 NA Intergenic Intergenic -2238 ENSMUSG00000110286.1 ENSMUSG00000110286 ENSMUST00000209946 Gm7706 lincRNA Interval_99524 chr2 162956984 162957341 + 0 NA intron (ENSMUSG00000035576.13, intron 8 of 20) protein_coding-intron (ENSMUSG00000035576.13, intron 8 of 22) 13687 ENSMUSG00000035576.13 ENSMUSG00000035576 ENSMUST00000125296 L3mbtl1 protein_coding Interval_158146 chr8 79189066 79190613 + 0 NA TTS (ENSMUSG00000071064.15) protein_coding-TTS (ENSMUSG00000071064.15) -36091 ENSMUSG00000110388.1 ENSMUSG00000110388 ENSMUST00000211572 Gm30329 antisense Interval_174395 chrX 151130312 151130715 + 0 NA Intergenic Intergenic -26094 ENSMUSG00000081942.1 ENSMUSG00000081942 ENSMUST00000119370 Gm15149 processed_pseudogene Interval_50810 chr14 19976611 19978011 + 0 NA promoter-TSS (ENSMUSG00000043004.13) protein_coding-promoter-TSS (ENSMUSG00000043004.13) -127 ENSMUSG00000043004.13 ENSMUSG00000043004 ENSMUST00000161247 Gng2 protein_coding Interval_145795 chr7 38392039 38392292 + 0 NA intron (ENSMUSG00000101708.6, intron 2 of 5) transcribed_processed_pseudogene-intron (ENSMUSG00000101708.6, intron 2 of 6) 10603 ENSMUSG00000102073.1 ENSMUSG00000102073 ENSMUST00000190556 Gm6818 unprocessed_pseudogene Interval_93524 chr2 73774824 73775962 + 0 NA promoter-TSS (ENSMUSG00000056486.18) protein_coding-promoter-TSS (ENSMUSG00000056486.18) -33769 ENSMUSG00000081062.1 ENSMUSG00000081062 ENSMUST00000118445 Gm13640 processed_pseudogene Interval_148965 chr7 90460364 90461414 + 0 NA Intergenic Intergenic 3637 ENSMUSG00000109216.1 ENSMUSG00000109216 ENSMUST00000207423 Gm44907 TEC Interval_8498 chr1 140183297 140183686 + 0 NA promoter-TSS (ENSMUSG00000026365.15) protein_coding-promoter-TSS (ENSMUSG00000026365.15) 273 ENSMUSG00000026365.15 ENSMUSG00000026365 ENSMUST00000194688 Cfh protein_coding Interval_58874 chr15 39534597 39534907 + 0 NA intron (ENSMUSG00000037386.16, intron 17 of 26) protein_coding-intron (ENSMUSG00000037386.16, intron 17 of 26) 97514 ENSMUSG00000037386.16 ENSMUSG00000037386 ENSMUST00000226410 Rims2 protein_coding Interval_114298 chr4 71433969 71434846 + 0 NA Intergenic Intergenic -63211 ENSMUSG00000083914.3 ENSMUSG00000083914 ENSMUST00000120838 Rps18-ps1 processed_pseudogene Interval_126439 chr5 88587440 88587743 + 0 NA intron (ENSMUSG00000029291.11, intron 1 of 2) protein_coding-intron (ENSMUSG00000029291.11, intron 1 of 12) 33129 ENSMUSG00000070697.4 ENSMUSG00000070697 ENSMUST00000090413 Utp3 protein_coding Interval_32134 chr11 105462676 105463074 + 0 NA Intergenic Intergenic 28430 ENSMUSG00000086089.1 ENSMUSG00000086089 ENSMUST00000155987 Gm11640 antisense Interval_70843 chr17 15294144 15294345 + 0 NA Intergenic Intergenic -8886 ENSMUSG00000116851.1 ENSMUSG00000116851 ENSMUST00000232255 Gm35576 lincRNA Interval_98117 chr2 148338631 148338835 + 0 NA Intergenic Intergenic -56611 ENSMUSG00000037014.4 ENSMUSG00000037014 ENSMUST00000109962 Sstr4 protein_coding Interval_48493 chr13 99416809 99417116 + 0 NA Intergenic Intergenic -4298 ENSMUSG00000097828.2 ENSMUSG00000097828 ENSMUST00000225937 6430562O15Rik processed_transcript Interval_26328 chr11 56252028 56252430 + 0 NA Intergenic Intergenic 10854 ENSMUSG00000084169.1 ENSMUSG00000084169 ENSMUST00000120178 Gm12240 processed_pseudogene Interval_830 chr1 12147381 12148464 + 0 NA Intergenic Intergenic 26962 ENSMUSG00000101610.1 ENSMUSG00000101610 ENSMUST00000187748 Gm7560 processed_pseudogene Interval_52264 chr14 41141685 41141922 + 0 NA Intergenic Intergenic -7109 ENSMUSG00000114782.1 ENSMUSG00000114782 ENSMUST00000225779 Gm7920 processed_pseudogene Interval_104783 chr3 73056472 73057730 + 0 NA promoter-TSS (ENSMUSG00000048304.8) protein_coding-promoter-TSS (ENSMUSG00000048304.8) -158 ENSMUSG00000048304.8 ENSMUSG00000048304 ENSMUST00000059407 Slitrk3 protein_coding Interval_167381 chr9 67999174 67999372 + 0 NA Intergenic Intergenic 26441 ENSMUSG00000111841.1 ENSMUSG00000111841 ENSMUST00000216827 Gm20745 lincRNA Interval_99426 chr2 160987000 160987829 + 0 NA intron (ENSMUSG00000057133.14, intron 20 of 22) protein_coding-intron (ENSMUSG00000057133.14, intron 20 of 36) -2368 ENSMUSG00000057133.14 ENSMUSG00000057133 ENSMUST00000125179 Chd6 protein_coding Interval_52515 chr14 47236008 47236679 + 0 NA Intergenic Intergenic 8927 ENSMUSG00000037572.17 ENSMUSG00000037572 ENSMUST00000139124 Wdhd1 protein_coding Interval_104673 chr3 69296987 69297403 + 0 NA Intergenic Intergenic 23390 ENSMUSG00000091315.1 ENSMUSG00000091315 ENSMUST00000164501 Gm17214 processed_pseudogene Interval_141999 chr6 136468410 136471220 + 0 NA Intergenic Intergenic 17371 ENSMUSG00000091408.3 ENSMUSG00000091408 ENSMUST00000178117 Gm6728 processed_pseudogene Interval_138493 chr6 88647922 88648256 + 0 NA Intergenic Intergenic -29567 ENSMUSG00000033182.12 ENSMUSG00000033182 ENSMUST00000184664 Kbtbd12 protein_coding Interval_58094 chr15 27840340 27841799 + 0 NA intron (ENSMUSG00000022263.10, intron 19 of 35) protein_coding-intron (ENSMUSG00000022263.10, intron 20 of 56) -15238 ENSMUSG00000115641.1 ENSMUSG00000115641 ENSMUST00000228765 Gm9891 TEC Interval_120632 chr4 149793283 149794255 + 0 NA promoter-TSS (ENSMUSG00000081601.1) processed_pseudogene-promoter-TSS (ENSMUSG00000081601.1) -350 ENSMUSG00000081601.1 ENSMUSG00000081601 ENSMUST00000119178 Gm13065 processed_pseudogene Interval_69823 chr16 97067116 97067424 + 0 NA intron (ENSMUSG00000050272.10, intron 1 of 32) protein_coding-intron (ENSMUSG00000050272.10, intron 1 of 32) 148538 ENSMUSG00000117324.1 ENSMUSG00000117324 ENSMUST00000232718 Gm32432 antisense Interval_99469 chr2 161773678 161773877 + 0 NA intron (ENSMUSG00000053141.16, intron 11 of 29) protein_coding-intron (ENSMUSG00000053141.16, intron 11 of 30) 26378 ENSMUSG00000053141.16 ENSMUSG00000053141 ENSMUST00000129015 Ptprt protein_coding Interval_133828 chr6 12875145 12877506 + 0 NA Intergenic Intergenic 18928 ENSMUSG00000083620.1 ENSMUSG00000083620 ENSMUST00000121833 Gm15529 processed_pseudogene Interval_33714 chr11 118039833 118040645 + 0 NA intron (ENSMUSG00000033987.16, intron 69 of 80) protein_coding-intron (ENSMUSG00000033987.16, intron 69 of 80) 27896 ENSMUSG00000017715.11 ENSMUSG00000017715 ENSMUST00000155507 Pgs1 protein_coding Interval_36977 chr12 55846433 55847195 + 0 NA intron (ENSMUSG00000012076.8, intron 2 of 4) protein_coding-intron (ENSMUSG00000012076.8, intron 4 of 9) 10410 ENSMUSG00000012076.8 ENSMUSG00000012076 ENSMUST00000219575 Brms1l protein_coding Interval_50274 chr14 11577204 11577774 + 0 NA intron (ENSMUSG00000021745.14, intron 1 of 3) protein_coding-intron (ENSMUSG00000021745.14, intron 1 of 29) -56719 ENSMUSG00000114849.1 ENSMUSG00000114849 ENSMUST00000224543 Gm48595 lincRNA Interval_15925 chr10 59354158 59355406 + 0 NA intron (ENSMUSG00000019916.14, intron 9 of 14) protein_coding-intron (ENSMUSG00000019916.14, intron 9 of 14) 31414 ENSMUSG00000019916.14 ENSMUSG00000019916 ENSMUST00000105466 P4ha1 protein_coding Interval_62454 chr15 93133301 93134156 + 0 NA Intergenic Intergenic 3814 ENSMUSG00000116124.1 ENSMUSG00000116124 ENSMUST00000230014 Gm49420 processed_transcript Interval_5041 chr1 84594695 84595003 + 0 NA intron (ENSMUSG00000036766.12, intron 1 of 4) protein_coding-intron (ENSMUSG00000036766.12, intron 1 of 12) 28992 ENSMUSG00000036766.12 ENSMUSG00000036766 ENSMUST00000191546 Dner protein_coding Interval_73508 chr17 38366590 38366893 + 0 NA Intergenic Intergenic -12967 ENSMUSG00000117177.1 ENSMUSG00000117177 ENSMUST00000233489 Gm49810 unprocessed_pseudogene Interval_52643 chr14 48197475 48197685 + 0 NA exon (ENSMUSG00000115555.1, exon 1 of 1) TEC-exon (ENSMUSG00000115555.1, exon 1 of 1) 820 ENSMUSG00000115555.1 ENSMUSG00000115555 ENSMUST00000227419 Gm49307 TEC Interval_165882 chr9 54184999 54185375 + 0 NA intron (ENSMUSG00000032274.9, intron 2 of 8) protein_coding-intron (ENSMUSG00000032274.9, intron 2 of 8) -3113 ENSMUSG00000032274.9 ENSMUSG00000032274 ENSMUST00000216974 Cyp19a1 protein_coding Interval_23216 chr11 20605292 20605864 + 0 NA intron (ENSMUSG00000049800.13, intron 1 of 1) protein_coding-intron (ENSMUSG00000049800.13, intron 1 of 1) -30389 ENSMUSG00000083555.1 ENSMUSG00000083555 ENSMUST00000121890 Gm12035 processed_pseudogene Interval_99248 chr2 158358794 158359003 + 0 NA promoter-TSS (ENSMUSG00000064995.1) snoRNA-promoter-TSS (ENSMUSG00000064995.1) -426 ENSMUSG00000064995.1 ENSMUSG00000064995 ENSMUST00000083061 Gm26003 snoRNA Interval_116490 chr4 114635627 114636281 + 0 NA Intergenic Intergenic 37386 ENSMUSG00000100998.1 ENSMUSG00000100998 ENSMUST00000189251 Gm28864 lincRNA Interval_170262 chr9 106531461 106532105 + 0 NA intron (ENSMUSG00000118396.2, intron 2 of 3) protein_coding-intron (ENSMUSG00000118396.2, intron 2 of 4) 12903 ENSMUSG00000118396.2 ENSMUSG00000118396 ENSMUST00000062917 Iqcf2 protein_coding Interval_80701 chr18 46473025 46473244 + 0 NA TTS (ENSMUSG00000088804.1) snRNA-TTS (ENSMUSG00000088804.1) 890 ENSMUSG00000088804.1 ENSMUSG00000088804 ENSMUST00000158179 Gm24076 snRNA Interval_173530 chrX 98863531 98863876 + 0 NA intron (ENSMUSG00000031214.13, intron 2 of 2) protein_coding-intron (ENSMUSG00000031214.13, intron 2 of 24) 26906 ENSMUSG00000031214.13 ENSMUSG00000031214 ENSMUST00000156634 Ophn1 protein_coding Interval_129082 chr5 117313532 117315241 + 0 NA intron (ENSMUSG00000097163.2, intron 1 of 1) lincRNA-intron (ENSMUSG00000097163.2, intron 1 of 1) 1259 ENSMUSG00000097163.2 ENSMUSG00000097163 ENSMUST00000181440 BC051077 lincRNA Interval_108036 chr3 120824994 120825305 + 0 NA intron (ENSMUSG00000098097.7, intron 1 of 11) lincRNA-intron (ENSMUSG00000098097.7, intron 1 of 3) 61583 ENSMUSG00000098097.7 ENSMUSG00000098097 ENSMUST00000182099 6530403H02Rik lincRNA Interval_151820 chr7 126861119 126862885 + 0 NA promoter-TSS (ENSMUSG00000042606.9) protein_coding-promoter-TSS (ENSMUSG00000042606.9) 359 ENSMUSG00000030689.15 ENSMUSG00000030689 ENSMUST00000144056 Ino80e protein_coding Interval_167705 chr9 72180804 72181466 + 0 NA Intergenic Intergenic -1377 ENSMUSG00000099020.1 ENSMUSG00000099020 ENSMUST00000185132 Gm27159 lincRNA Interval_37998 chr12 73705438 73706380 + 0 NA intron (ENSMUSG00000021108.18, intron 10 of 14) protein_coding-intron (ENSMUSG00000021108.18, intron 9 of 13) -87574 ENSMUSG00000113321.1 ENSMUSG00000113321 ENSMUST00000222997 Gm8075 lincRNA Interval_108512 chr3 127836968 127838013 + 0 NA promoter-TSS (ENSMUSG00000074238.6) protein_coding-promoter-TSS (ENSMUSG00000074238.6) 33 ENSMUSG00000074238.6 ENSMUSG00000074238 ENSMUST00000196392 Ap1ar protein_coding Interval_35327 chr12 20667851 20668486 + 0 NA intron (ENSMUSG00000116635.1, intron 3 of 3) transcribed_unprocessed_pseudogene-intron (ENSMUSG00000116635.1, intron 3 of 3) 1827 ENSMUSG00000116635.1 ENSMUSG00000116635 ENSMUST00000232444 Gm49699 transcribed_unprocessed_pseudogene Interval_3831 chr1 63322154 63322393 + 0 NA Intergenic Intergenic -21890 ENSMUSG00000094214.1 ENSMUSG00000094214 ENSMUST00000083151 Gm23448 snRNA Interval_134116 chr6 20686562 20687845 + 0 NA Intergenic Intergenic 283787 ENSMUSG00000106763.1 ENSMUSG00000106763 ENSMUST00000201133 Gm19102 processed_pseudogene Interval_118680 chr4 133167855 133168062 + 0 NA intron (ENSMUSG00000028868.13, intron 2 of 2) protein_coding-intron (ENSMUSG00000028868.13, intron 1 of 8) 3756 ENSMUSG00000089298.1 ENSMUSG00000089298 ENSMUST00000158673 Gm24636 misc_RNA Interval_15410 chr10 45650408 45650685 + 0 NA intron (ENSMUSG00000038822.15, intron 10 of 23) protein_coding-intron (ENSMUSG00000038822.15, intron 10 of 23) -6409 ENSMUSG00000111491.1 ENSMUSG00000111491 ENSMUST00000215636 Gm47503 TEC Interval_90678 chr2 31838108 31838385 + 0 NA intron (ENSMUSG00000026841.7, intron 2 of 6) protein_coding-intron (ENSMUSG00000026841.7, intron 2 of 6) 7759 ENSMUSG00000026841.7 ENSMUSG00000026841 ENSMUST00000028188 Fibcd1 protein_coding Interval_26757 chr11 60247645 60249204 + 0 NA intron (ENSMUSG00000000538.18, intron 8 of 14) protein_coding-intron (ENSMUSG00000000538.18, intron 8 of 12) 7614 ENSMUSG00000085132.1 ENSMUSG00000085132 ENSMUST00000139025 Gm12265 antisense Interval_24502 chr11 33787290 33787559 + 0 NA intron (ENSMUSG00000053519.17, intron 1 of 8) protein_coding-intron (ENSMUSG00000053519.17, intron 1 of 7) 81874 ENSMUSG00000087328.1 ENSMUSG00000087328 ENSMUST00000125068 Gm12120 antisense Interval_120467 chr4 148811938 148812236 + 0 NA intron (ENSMUSG00000028977.17, intron 1 of 1) protein_coding-intron (ENSMUSG00000028977.17, intron 1 of 15) 98384 ENSMUSG00000087273.1 ENSMUSG00000087273 ENSMUST00000139895 Gm13203 lincRNA Interval_37016 chr12 56426362 56426576 + 0 NA Intergenic Intergenic -15912 ENSMUSG00000112626.1 ENSMUSG00000112626 ENSMUST00000218947 Gm18027 processed_pseudogene Interval_115055 chr4 88965519 88965862 + 0 NA Intergenic Intergenic -27169 ENSMUSG00000117123.1 ENSMUSG00000117123 ENSMUST00000233522 Gm49890 lincRNA Interval_77580 chr17 92314236 92314468 + 0 NA Intergenic Intergenic 58764 ENSMUSG00000117624.1 ENSMUSG00000117624 ENSMUST00000234379 Gm6751 processed_pseudogene Interval_135333 chr6 38389187 38390251 + 0 NA intron (ENSMUSG00000056832.14, intron 5 of 17) protein_coding-intron (ENSMUSG00000056832.14, intron 5 of 17) -6548 ENSMUSG00000089905.1 ENSMUSG00000089905 ENSMUST00000162673 Gm16563 processed_pseudogene Interval_171462 chr9 118505212 118507294 + 0 NA promoter-TSS (ENSMUSG00000038708.10) protein_coding-promoter-TSS (ENSMUSG00000038708.10) -17154 ENSMUSG00000110692.1 ENSMUSG00000110692 ENSMUST00000212286 Gm33460 antisense Interval_70104 chr17 5336314 5337181 + 0 NA exon (ENSMUSG00000069729.14, exon 17 of 19) protein_coding-exon (ENSMUSG00000069729.14, exon 17 of 19) -52016 ENSMUSG00000101133.1 ENSMUSG00000101133 ENSMUST00000190732 Gm29050 antisense Interval_942 chr1 13325126 13325459 + 0 NA intron (ENSMUSG00000005886.14, intron 1 of 12) protein_coding-intron (ENSMUSG00000005886.14, intron 1 of 22) 9317 ENSMUSG00000087782.1 ENSMUSG00000087782 ENSMUST00000157157 Gm23169 snRNA Interval_35204 chr12 18101399 18102021 + 0 NA Intergenic Intergenic -22006 ENSMUSG00000113048.1 ENSMUSG00000113048 ENSMUST00000221945 Gm48347 unprocessed_pseudogene Interval_94425 chr2 91130986 91132187 + 0 NA exon (ENSMUSG00000002100.15, exon 25 of 35) protein_coding-exon (ENSMUSG00000002100.15, exon 25 of 35) 7670 ENSMUSG00000040687.16 ENSMUSG00000040687 ENSMUST00000150517 Madd protein_coding Interval_37829 chr12 72326357 72326946 + 0 NA intron (ENSMUSG00000021087.18, intron 1 of 8) protein_coding-intron (ENSMUSG00000021087.18, intron 1 of 8) -90103 ENSMUSG00000021087.18 ENSMUSG00000021087 ENSMUST00000221756 Rtn1 protein_coding Interval_1561 chr1 26282427 26283275 + 0 NA Intergenic Intergenic -183385 ENSMUSG00000099458.1 ENSMUSG00000099458 ENSMUST00000190716 Gm19123 processed_pseudogene Interval_130375 chr5 127044824 127045019 + 0 NA TTS (ENSMUSG00000105490.1) lincRNA-TTS (ENSMUSG00000105490.1) 14131 ENSMUSG00000105490.1 ENSMUSG00000105490 ENSMUST00000197983 4933438B17Rik lincRNA Interval_164449 chr9 37106369 37108133 + 0 NA intron (ENSMUSG00000035934.16, intron 1 of 4) protein_coding-intron (ENSMUSG00000035934.16, intron 1 of 12) -11405 ENSMUSG00000110722.1 ENSMUSG00000110722 ENSMUST00000215174 Gm48716 antisense Interval_138334 chr6 87331548 87331766 + 0 NA intron (ENSMUSG00000033420.12, intron 1 of 16) protein_coding-intron (ENSMUSG00000033420.12, intron 1 of 17) 3203 ENSMUSG00000108143.1 ENSMUSG00000108143 ENSMUST00000203660 Gm44414 TEC Interval_119495 chr4 137930902 137931493 + 0 NA intron (ENSMUSG00000057530.14, intron 4 of 4) protein_coding-intron (ENSMUSG00000057530.14, intron 5 of 19) 17726 ENSMUSG00000057530.14 ENSMUSG00000057530 ENSMUST00000129607 Ece1 protein_coding Interval_116911 chr4 118170966 118171805 + 0 NA intron (ENSMUSG00000033326.15, intron 3 of 21) protein_coding-intron (ENSMUSG00000033326.15, intron 3 of 18) 7307 ENSMUSG00000088303.1 ENSMUSG00000088303 ENSMUST00000157678 Gm23382 snoRNA Interval_117668 chr4 125464059 125465072 + 0 NA Intergenic Intergenic -26135 ENSMUSG00000001985.9 ENSMUSG00000001985 ENSMUST00000030676 Grik3 protein_coding Interval_38073 chr12 75497557 75497985 + 0 NA intron (ENSMUSG00000021051.10, intron 2 of 11) protein_coding-intron (ENSMUSG00000021051.10, intron 3 of 13) 10974 ENSMUSG00000112254.1 ENSMUSG00000112254 ENSMUST00000218033 Gm47690 TEC Interval_107683 chr3 110530655 110530936 + 0 NA Intergenic Intergenic 33606 ENSMUSG00000105121.1 ENSMUSG00000105121 ENSMUST00000200356 Gm43406 processed_pseudogene Interval_18062 chr10 82000181 82000348 + 0 NA Intergenic Intergenic -8115 ENSMUSG00000111985.1 ENSMUSG00000111985 ENSMUST00000218202 Gm8290 processed_pseudogene Interval_46188 chr13 62375532 62375841 + 0 NA intron (ENSMUSG00000094942.7, intron 1 of 2) protein_coding-intron (ENSMUSG00000094942.7, intron 1 of 3) 7465 ENSMUSG00000094942.7 ENSMUSG00000094942 ENSMUST00000202194 Gm3604 protein_coding Interval_112699 chr4 44173292 44173524 + 0 NA intron (ENSMUSG00000035696.15, intron 2 of 3) protein_coding-intron (ENSMUSG00000035696.15, intron 2 of 3) -5125 ENSMUSG00000035696.15 ENSMUSG00000035696 ENSMUST00000147302 Rnf38 protein_coding Interval_90336 chr2 29843448 29843889 + 0 NA TTS (ENSMUSG00000069020.9) protein_coding-TTS (ENSMUSG00000069020.9) -1979 ENSMUSG00000105010.1 ENSMUSG00000105010 ENSMUST00000198317 Mir219b miRNA Interval_137866 chr6 83038398 83039074 + 0 NA intron (ENSMUSG00000000693.10, intron 4 of 8) protein_coding-intron (ENSMUSG00000000693.10, intron 4 of 13) 336 ENSMUSG00000000693.10 ENSMUSG00000000693 ENSMUST00000155502 Loxl3 protein_coding Interval_63366 chr15 100635395 100637876 + 0 NA promoter-TSS (ENSMUSG00000053559.13) protein_coding-promoter-TSS (ENSMUSG00000053559.13) -1076 ENSMUSG00000053559.13 ENSMUSG00000053559 ENSMUST00000230517 Smagp protein_coding Interval_127937 chr5 109556303 109559018 + 0 NA exon (ENSMUSG00000033467.12, exon 2 of 8) protein_coding-exon (ENSMUSG00000033467.12, exon 2 of 8) 1276 ENSMUSG00000033467.12 ENSMUSG00000033467 ENSMUST00000198960 Crlf2 protein_coding Interval_121381 chr4 155376676 155378087 + 0 NA Intergenic Intergenic 20666 ENSMUSG00000029054.8 ENSMUSG00000029054 ENSMUST00000129892 Gabrd protein_coding Interval_64742 chr16 14793833 14794690 + 0 NA Intergenic Intergenic -3250 ENSMUSG00000116400.1 ENSMUSG00000116400 ENSMUST00000230613 Gm49530 processed_pseudogene Interval_48448 chr13 99097777 99098168 + 0 NA Intergenic Intergenic -2789 ENSMUSG00000097848.2 ENSMUSG00000097848 ENSMUST00000224929 Gm807 lincRNA Interval_128926 chr5 116132234 116132711 + 0 NA intron (ENSMUSG00000043913.14, intron 12 of 13) protein_coding-intron (ENSMUSG00000043913.14, intron 12 of 13) 8858 ENSMUSG00000086655.1 ENSMUSG00000086655 ENSMUST00000127792 C330018A13Rik antisense Interval_169645 chr9 99673921 99674712 + 0 NA Intergenic Intergenic 24100 ENSMUSG00000037784.14 ENSMUSG00000037784 ENSMUST00000190893 Dzip1l protein_coding Interval_58593 chr15 36454900 36455837 + 0 NA Intergenic Intergenic -18677 ENSMUSG00000115395.1 ENSMUSG00000115395 ENSMUST00000227487 Gm49224 lincRNA Interval_99591 chr2 163410536 163410933 + 0 NA intron (ENSMUSG00000035399.12, intron 3 of 3) protein_coding-intron (ENSMUSG00000035399.12, intron 3 of 3) -9061 ENSMUSG00000099632.1 ENSMUSG00000099632 ENSMUST00000190930 2900093K20Rik antisense Interval_112406 chr4 41081809 41082042 + 0 NA Intergenic Intergenic 12523 ENSMUSG00000028435.8 ENSMUSG00000028435 ENSMUST00000154722 Aqp3 protein_coding Interval_133805 chr6 12522110 12522614 + 0 NA intron (ENSMUSG00000032625.14, intron 2 of 27) protein_coding-intron (ENSMUSG00000032625.14, intron 1 of 5) -43156 ENSMUSG00000083794.1 ENSMUSG00000083794 ENSMUST00000118647 Gm16123 processed_pseudogene Interval_98721 chr2 154500746 154501650 + 0 NA intron (ENSMUSG00000038533.15, intron 2 of 2) protein_coding-intron (ENSMUSG00000038533.15, intron 2 of 10) -45887 ENSMUSG00000038523.10 ENSMUSG00000038523 ENSMUST00000109709 1700003F12Rik protein_coding Interval_94623 chr2 92740520 92743463 + 0 NA promoter-TSS (ENSMUSG00000085976.1) lincRNA-promoter-TSS (ENSMUSG00000085976.1) -239 ENSMUSG00000085976.1 ENSMUSG00000085976 ENSMUST00000152230 Gm13816 lincRNA Interval_50445 chr14 13353802 13354351 + 0 NA promoter-TSS (ENSMUSG00000081115.2) processed_pseudogene-promoter-TSS (ENSMUSG00000081115.2) 4 ENSMUSG00000081115.2 ENSMUSG00000081115 ENSMUST00000118492 Gm15913 processed_pseudogene Interval_135649 chr6 42323555 42325479 + 0 NA promoter-TSS (ENSMUSG00000029861.17) protein_coding-promoter-TSS (ENSMUSG00000029861.17) 126 ENSMUSG00000029861.17 ENSMUSG00000029861 ENSMUST00000095974 Fam131b protein_coding Interval_57340 chr15 8967424 8968097 + 0 NA promoter-TSS (ENSMUSG00000048424.17) protein_coding-promoter-TSS (ENSMUSG00000048424.17) -189 ENSMUSG00000048424.17 ENSMUSG00000048424 ENSMUST00000227191 Ranbp3l protein_coding Interval_164905 chr9 43005998 43006371 + 0 NA intron (ENSMUSG00000059495.14, intron 13 of 40) protein_coding-intron (ENSMUSG00000059495.14, intron 13 of 41) 20476 ENSMUSG00000059495.14 ENSMUSG00000059495 ENSMUST00000214175 Arhgef12 protein_coding Interval_68688 chr16 84745474 84745818 + 0 NA Intergenic Intergenic 8296 ENSMUSG00000088058.1 ENSMUSG00000088058 ENSMUST00000157433 Gm26153 snoRNA Interval_78501 chr18 13740880 13741094 + 0 NA intron (ENSMUSG00000024420.9, intron 2 of 5) protein_coding-intron (ENSMUSG00000024420.9, intron 5 of 7) 135339 ENSMUSG00000024420.9 ENSMUSG00000024420 ENSMUST00000234025 Zfp521 protein_coding Interval_97351 chr2 135251959 135252439 + 0 NA intron (ENSMUSG00000051177.16, intron 6 of 6) protein_coding-intron (ENSMUSG00000051177.16, intron 6 of 31) -36583 ENSMUSG00000085247.1 ENSMUSG00000085247 ENSMUST00000138303 4930545L23Rik antisense Interval_133211 chr5 150577358 150577735 + 0 NA promoter-TSS (ENSMUSG00000041132.11) protein_coding-promoter-TSS (ENSMUSG00000041132.11) -6448 ENSMUSG00000106980.1 ENSMUSG00000106980 ENSMUST00000201213 Gm43690 lincRNA Interval_26508 chr11 58225534 58226112 + 0 NA Intergenic Intergenic 5627 ENSMUSG00000118428.1 ENSMUSG00000118428 ENSMUST00000238359 Gm5038 unitary_pseudogene Interval_127413 chr5 103787132 103787394 + 0 NA intron (ENSMUSG00000029313.18, intron 3 of 12) protein_coding-intron (ENSMUSG00000029313.18, intron 3 of 19) 32699 ENSMUSG00000029313.18 ENSMUSG00000029313 ENSMUST00000152145 Aff1 protein_coding Interval_155688 chr8 36159314 36159507 + 0 NA promoter-TSS (ENSMUSG00000109704.1) lincRNA-promoter-TSS (ENSMUSG00000109704.1) -69 ENSMUSG00000109704.1 ENSMUSG00000109704 ENSMUST00000211253 Gm38414 lincRNA Interval_166313 chr9 58249332 58250283 + 0 NA promoter-TSS (ENSMUSG00000036986.16) protein_coding-promoter-TSS (ENSMUSG00000036986.16) -3381 ENSMUSG00000032333.6 ENSMUSG00000032333 ENSMUST00000216864 Stoml1 protein_coding Interval_16638 chr10 66741649 66742319 + 0 NA promoter-TSS (ENSMUSG00000112159.1) processed_pseudogene-promoter-TSS (ENSMUSG00000112159.1) -825 ENSMUSG00000112159.1 ENSMUSG00000112159 ENSMUST00000219914 Gm18777 processed_pseudogene Interval_12406 chr1 193124406 193124721 + 0 NA promoter-TSS (ENSMUSG00000016181.9) protein_coding-promoter-TSS (ENSMUSG00000016181.9) 5644 ENSMUSG00000016181.9 ENSMUSG00000016181 ENSMUST00000194124 Utp25 protein_coding Interval_149866 chr7 102093913 102095357 + 0 NA intron (ENSMUSG00000070425.13, intron 18 of 19) protein_coding-intron (ENSMUSG00000070425.13, intron 21 of 22) -7108 ENSMUSG00000030996.8 ENSMUSG00000030996 ENSMUST00000209809 Art1 protein_coding Interval_139943 chr6 112947069 112947646 + 0 NA promoter-TSS (ENSMUSG00000030257.16) protein_coding-promoter-TSS (ENSMUSG00000030257.16) 320 ENSMUSG00000108103.1 ENSMUSG00000108103 ENSMUST00000204406 Gm44081 lincRNA Interval_112887 chr4 45824032 45824304 + 0 NA intron (ENSMUSG00000035551.6, intron 1 of 4) protein_coding-intron (ENSMUSG00000035551.6, intron 1 of 4) -7805 ENSMUSG00000035551.6 ENSMUSG00000035551 ENSMUST00000145102 Igfbpl1 protein_coding Interval_133111 chr5 149909009 149909362 + 0 NA intron (ENSMUSG00000107112.1, intron 1 of 2) processed_transcript-intron (ENSMUSG00000107112.1, intron 1 of 2) -1067 ENSMUSG00000107112.1 ENSMUSG00000107112 ENSMUST00000201713 Gm36241 processed_transcript Interval_153976 chr8 11591654 11593610 + 0 NA Intergenic Intergenic 31994 ENSMUSG00000031508.14 ENSMUSG00000031508 ENSMUST00000210876 Ankrd10 protein_coding Interval_34305 chr12 3260653 3262110 + 0 NA intron (ENSMUSG00000020671.9, intron 2 of 5) protein_coding-intron (ENSMUSG00000020671.9, intron 2 of 5) 25466 ENSMUSG00000079179.9 ENSMUSG00000079179 ENSMUST00000049684 Rab10os antisense Interval_92335 chr2 59040581 59041538 + 0 NA intron (ENSMUSG00000036641.9, intron 1 of 14) protein_coding-intron (ENSMUSG00000036641.9, intron 1 of 14) -81352 ENSMUSG00000082989.1 ENSMUSG00000082989 ENSMUST00000120771 Gm13557 processed_pseudogene Interval_139696 chr6 107235018 107235348 + 0 NA intron (ENSMUSG00000107714.1, intron 1 of 3) lincRNA-intron (ENSMUSG00000107714.1, intron 1 of 3) 41555 ENSMUSG00000107714.1 ENSMUSG00000107714 ENSMUST00000203245 Gm34933 lincRNA Interval_227 KV575240.1 86886 87558 + 0 NA NA NA NA NA Interval_157606 chr8 71677525 71678180 + 0 NA promoter-TSS (ENSMUSG00000031805.17) protein_coding-promoter-TSS (ENSMUSG00000031805.17) 1300 ENSMUSG00000031805.17 ENSMUSG00000031805 ENSMUST00000130624 Jak3 protein_coding Interval_113439 chr4 54998040 54998854 + 0 NA intron (ENSMUSG00000060206.11, intron 1 of 12) protein_coding-intron (ENSMUSG00000060206.11, intron 1 of 12) 53399 ENSMUSG00000060206.11 ENSMUSG00000060206 ENSMUST00000079605 Zfp462 protein_coding Interval_100463 chr2 169159032 169159581 + 0 NA Intergenic Intergenic 52853 ENSMUSG00000086238.1 ENSMUSG00000086238 ENSMUST00000144607 Gm14258 lincRNA Interval_114436 chr4 76681880 76682279 + 0 NA intron (ENSMUSG00000028399.18, intron 9 of 9) protein_coding-intron (ENSMUSG00000028399.18, intron 9 of 14) -10064 ENSMUSG00000083050.1 ENSMUSG00000083050 ENSMUST00000120103 Gm11242 processed_pseudogene Interval_95238 chr2 105097123 105097817 + 0 NA intron (ENSMUSG00000074987.9, intron 3 of 3) antisense-intron (ENSMUSG00000074987.9, intron 3 of 6) 5452 ENSMUSG00000079175.1 ENSMUSG00000079175 ENSMUST00000111107 Gm11060 protein_coding Interval_122591 chr5 24064405 24064939 + 0 NA Intergenic Intergenic -20572 ENSMUSG00000106118.1 ENSMUSG00000106118 ENSMUST00000197900 Gm18038 processed_pseudogene Interval_76812 chr17 84234199 84234525 + 0 NA intron (ENSMUSG00000024251.10, intron 6 of 12) protein_coding-intron (ENSMUSG00000024251.10, intron 31 of 37) -46415 ENSMUSG00000045817.8 ENSMUSG00000045817 ENSMUST00000060366 Zfp36l2 protein_coding Interval_32270 chr11 106627343 106628215 + 0 NA Intergenic Intergenic 35547 ENSMUSG00000020717.19 ENSMUSG00000020717 ENSMUST00000124958 Pecam1 protein_coding Interval_90184 chr2 28839542 28841240 + 0 NA promoter-TSS (ENSMUSG00000035666.14) protein_coding-promoter-TSS (ENSMUSG00000035666.14) -31 ENSMUSG00000035666.14 ENSMUSG00000035666 ENSMUST00000124390 Gtf3c4 protein_coding Interval_23206 chr11 20556480 20556977 + 0 NA intron (ENSMUSG00000049800.13, intron 1 of 1) protein_coding-intron (ENSMUSG00000049800.13, intron 1 of 1) 13475 ENSMUSG00000049800.13 ENSMUSG00000049800 ENSMUST00000109585 Sertad2 protein_coding Interval_134281 chr6 24486737 24487064 + 0 NA intron (ENSMUSG00000046192.4, intron 7 of 12) protein_coding-intron (ENSMUSG00000046192.4, intron 7 of 12) 28167 ENSMUSG00000046192.4 ENSMUSG00000046192 ENSMUST00000052277 Iqub protein_coding Interval_66802 chr16 37761734 37762463 + 0 NA Intergenic Intergenic -14957 ENSMUSG00000022816.11 ENSMUSG00000022816 ENSMUST00000123077 Fstl1 protein_coding Interval_1857 chr1 34168491 34169646 + 0 NA intron (ENSMUSG00000026131.20, intron 25 of 32) protein_coding-intron (ENSMUSG00000026131.20, intron 24 of 97) 9378 ENSMUSG00000096992.3 ENSMUSG00000096992 ENSMUST00000187268 Gm26788 processed_transcript Interval_115386 chr4 98444460 98445030 + 0 NA intron (ENSMUSG00000061859.17, intron 14 of 44) protein_coding-intron (ENSMUSG00000061859.17, intron 14 of 43) 48954 ENSMUSG00000061859.17 ENSMUSG00000061859 ENSMUST00000030290 Patj protein_coding Interval_28577 chr11 76916479 76917595 + 0 NA TTS (ENSMUSG00000020839.16) protein_coding-TTS (ENSMUSG00000020839.16) 12562 ENSMUSG00000020839.16 ENSMUSG00000020839 ENSMUST00000136899 Tmigd1 protein_coding Interval_6374 chr1 106534897 106535292 + 0 NA Intergenic Intergenic -6849 ENSMUSG00000054006.14 ENSMUSG00000054006 ENSMUST00000149909 D630008O14Rik antisense Interval_2929 chr1 51011024 51011670 + 0 NA intron (ENSMUSG00000026109.14, intron 4 of 9) protein_coding-intron (ENSMUSG00000026109.14, intron 4 of 9) -3966 ENSMUSG00000092906.1 ENSMUSG00000092906 ENSMUST00000175165 Gm25736 miRNA Interval_62714 chr15 96425355 96425764 + 0 NA intron (ENSMUSG00000033228.8, intron 3 of 7) protein_coding-intron (ENSMUSG00000033228.8, intron 6 of 14) 18496 ENSMUSG00000033228.8 ENSMUSG00000033228 ENSMUST00000227133 Scaf11 protein_coding Interval_44342 chr13 43906089 43906463 + 0 NA Intergenic Intergenic 33474 ENSMUSG00000089107.1 ENSMUSG00000089107 ENSMUST00000158482 Gm23117 snRNA Interval_15668 chr10 53346697 53347227 + 0 NA TTS (ENSMUSG00000038583.13) protein_coding-intron (ENSMUSG00000038594.9, intron 4 of 4) -2728 ENSMUSG00000112734.1 ENSMUSG00000112734 ENSMUST00000220401 Gm47644 sense_intronic Interval_43647 chr13 34421723 34421910 + 0 NA Intergenic Intergenic 4615 ENSMUSG00000114170.1 ENSMUSG00000114170 ENSMUST00000222063 Gm47120 processed_pseudogene Interval_126977 chr5 98902310 98902563 + 0 NA Intergenic Intergenic 41396 ENSMUSG00000029334.14 ENSMUSG00000029334 ENSMUST00000160765 Prkg2 protein_coding Interval_78116 chr18 8460923 8461249 + 0 NA Intergenic Intergenic 45957 ENSMUSG00000117484.1 ENSMUSG00000117484 ENSMUST00000234117 Gm5500 processed_pseudogene Interval_13447 chr10 18335918 18336357 + 0 NA TTS (ENSMUSG00000111313.1) processed_pseudogene-TTS (ENSMUSG00000111313.1) 1104 ENSMUSG00000111313.1 ENSMUSG00000111313 ENSMUST00000213578 Gm18942 processed_pseudogene Interval_110234 chr3 154663439 154664593 + 0 NA exon (ENSMUSG00000078161.8, exon 1 of 14) protein_coding-exon (ENSMUSG00000078161.8, exon 1 of 14) 7315 ENSMUSG00000103204.1 ENSMUSG00000103204 ENSMUST00000195806 Gm38139 sense_overlapping Interval_19626 chr10 106016211 106016656 + 0 NA Intergenic Intergenic 39646 ENSMUSG00000088084.1 ENSMUSG00000088084 ENSMUST00000157459 Gm25342 snoRNA Interval_120985 chr4 152059604 152059837 + 0 NA exon (ENSMUSG00000028948.16, exon 12 of 12) protein_coding-exon (ENSMUSG00000028948.16, exon 12 of 12) -16566 ENSMUSG00000039713.17 ENSMUSG00000039713 ENSMUST00000142412 Plekhg5 protein_coding Interval_63078 chr15 98989624 98989923 + 0 NA TTS (ENSMUSG00000097587.2) processed_transcript-TTS (ENSMUSG00000097587.2) 6425 ENSMUSG00000097587.2 ENSMUSG00000097587 ENSMUST00000180490 4930578M01Rik processed_transcript Interval_129386 chr5 119660734 119661127 + 0 NA intron (ENSMUSG00000087516.7, intron 1 of 2) antisense-intron (ENSMUSG00000087516.7, intron 1 of 2) -9739 ENSMUSG00000018604.18 ENSMUSG00000018604 ENSMUST00000154680 Tbx3 protein_coding Interval_112050 chr4 33532376 33533282 + 0 NA Intergenic Intergenic -79940 ENSMUSG00000081206.1 ENSMUSG00000081206 ENSMUST00000118608 Gm11935 processed_pseudogene Interval_33510 chr11 116963110 116963865 + 0 NA intron (ENSMUSG00000043857.16, intron 2 of 5) protein_coding-intron (ENSMUSG00000043857.16, intron 8 of 17) 16152 ENSMUSG00000043857.16 ENSMUSG00000043857 ENSMUST00000126757 Mgat5b protein_coding Interval_169060 chr9 91369679 91369999 + 0 NA TTS (ENSMUSG00000036972.14) protein_coding-TTS (ENSMUSG00000036972.14) -1511 ENSMUSG00000036972.14 ENSMUSG00000036972 ENSMUST00000085242 Zic4 protein_coding Interval_31273 chr11 99265769 99266116 + 0 NA Intergenic Intergenic 19320 ENSMUSG00000020913.3 ENSMUSG00000020913 ENSMUST00000017255 Krt24 protein_coding Interval_65445 chr16 22377876 22378591 + 0 NA Intergenic Intergenic 23596 ENSMUSG00000013089.15 ENSMUSG00000013089 ENSMUST00000170393 Etv5 protein_coding Interval_90337 chr2 29844942 29845131 + 0 NA promoter-TSS (ENSMUSG00000105010.1) miRNA-promoter-TSS (ENSMUSG00000105010.1) -611 ENSMUSG00000105010.1 ENSMUSG00000105010 ENSMUST00000198317 Mir219b miRNA Interval_91193 chr2 35812456 35812777 + 0 NA intron (ENSMUSG00000026885.13, intron 5 of 7) protein_coding-intron (ENSMUSG00000026885.13, intron 7 of 9) -6574 ENSMUSG00000086449.1 ENSMUSG00000086449 ENSMUST00000139455 9030204H09Rik antisense Interval_59929 chr15 62037161 62039596 + 0 NA promoter-TSS (ENSMUSG00000097039.8) lincRNA-promoter-TSS (ENSMUSG00000097039.8) 349 ENSMUSG00000098998.1 ENSMUSG00000098998 ENSMUST00000184473 Gm27913 misc_RNA Interval_114828 chr4 86020513 86020937 + 0 NA intron (ENSMUSG00000066113.16, intron 2 of 3) protein_coding-intron (ENSMUSG00000066113.16, intron 2 of 3) 22769 ENSMUSG00000064687.1 ENSMUSG00000064687 ENSMUST00000082753 Gm25811 snRNA Interval_36041 chr12 33605276 33606049 + 0 NA Intergenic Intergenic -108765 ENSMUSG00000112076.1 ENSMUSG00000112076 ENSMUST00000219348 Gm9368 processed_pseudogene Interval_32710 chr11 109898736 109899193 + 0 NA Intergenic Intergenic -37352 ENSMUSG00000085629.1 ENSMUSG00000085629 ENSMUST00000149226 Gm11697 antisense Interval_147284 chr7 65484525 65484967 + 0 NA intron (ENSMUSG00000030516.14, intron 2 of 4) protein_coding-intron (ENSMUSG00000030516.14, intron 2 of 4) -3525 ENSMUSG00000108533.1 ENSMUSG00000108533 ENSMUST00000207008 Gm44792 TEC Interval_11769 chr1 185313121 185313650 + 0 NA promoter-TSS (ENSMUSG00000065562.1) miRNA-promoter-TSS (ENSMUSG00000065562.1) 66 ENSMUSG00000065581.1 ENSMUSG00000065581 ENSMUST00000083647 Mir194-1 miRNA Interval_156863 chr8 61292645 61293372 + 0 NA intron (ENSMUSG00000031642.9, intron 2 of 10) protein_coding-intron (ENSMUSG00000031642.9, intron 2 of 11) -4136 ENSMUSG00000099419.1 ENSMUSG00000099419 ENSMUST00000188654 1700001D01Rik antisense Interval_11267 chr1 180592174 180592410 + 0 NA TTS (ENSMUSG00000026496.11) protein_coding-TTS (ENSMUSG00000026496.11) 5091 ENSMUSG00000098926.1 ENSMUSG00000098926 ENSMUST00000183443 Mir6904 miRNA Interval_36038 chr12 33551412 33552809 + 0 NA Intergenic Intergenic -55213 ENSMUSG00000112076.1 ENSMUSG00000112076 ENSMUST00000219348 Gm9368 processed_pseudogene Interval_149473 chr7 98881796 98882296 + 0 NA Intergenic Intergenic -13884 ENSMUSG00000109282.1 ENSMUSG00000109282 ENSMUST00000207592 Gm45188 antisense Interval_54604 chr14 71056525 71057166 + 0 NA Intergenic Intergenic -30425 ENSMUSG00000115671.1 ENSMUSG00000115671 ENSMUST00000227525 Gm49289 lincRNA Interval_28389 chr11 75572387 75573644 + 0 NA TTS (ENSMUSG00000038178.16) protein_coding-TTS (ENSMUSG00000038178.16) -15093 ENSMUSG00000017781.17 ENSMUSG00000017781 ENSMUST00000153768 Pitpna protein_coding Interval_117309 chr4 122897803 122898752 + 0 NA Intergenic Intergenic -12413 ENSMUSG00000028656.14 ENSMUSG00000028656 ENSMUST00000151041 Cap1 protein_coding Interval_25244 chr11 45851519 45852655 + 0 NA exon (ENSMUSG00000006169.20, exon 1 of 12) protein_coding-exon (ENSMUSG00000006169.20, exon 1 of 12) 22308 ENSMUSG00000076031.1 ENSMUSG00000076031 ENSMUST00000102077 Gm22751 miRNA Interval_102577 chr3 27945173 27945662 + 0 NA intron (ENSMUSG00000027695.16, intron 1 of 26) protein_coding-intron (ENSMUSG00000027695.16, intron 1 of 26) -49049 ENSMUSG00000043164.3 ENSMUSG00000043164 ENSMUST00000058077 Tmem212 protein_coding Interval_28589 chr11 77013227 77013436 + 0 NA TTS (ENSMUSG00000020838.12) protein_coding-TTS (ENSMUSG00000020838.12) -3458 ENSMUSG00000087398.1 ENSMUSG00000087398 ENSMUST00000138817 Gm12343 antisense Interval_64370 chr16 10899276 10899576 + 0 NA intron (ENSMUSG00000117309.1, intron 18 of 45) transcribed_unitary_pseudogene-intron (ENSMUSG00000117309.1, intron 18 of 45) 37880 ENSMUSG00000095369.2 ENSMUSG00000095369 ENSMUST00000233047 Gm21859 processed_transcript Interval_106366 chr3 95666091 95666803 + 0 NA Intergenic Intergenic 7590 ENSMUSG00000038612.16 ENSMUSG00000038612 ENSMUST00000178686 Mcl1 protein_coding Interval_95847 chr2 117231067 117231930 + 0 NA Intergenic Intergenic -9385 ENSMUSG00000081842.1 ENSMUSG00000081842 ENSMUST00000118467 Rap1a-ps2 processed_pseudogene Interval_59355 chr15 51846041 51846616 + 0 NA intron (ENSMUSG00000022312.11, intron 1 of 2) protein_coding-intron (ENSMUSG00000022312.11, intron 1 of 7) -10071 ENSMUSG00000022312.11 ENSMUSG00000022312 ENSMUST00000228583 Eif3h protein_coding Interval_2395 chr1 38951216 38951871 + 0 NA Intergenic Intergenic 12340 ENSMUSG00000067604.8 ENSMUSG00000067604 ENSMUST00000160214 Nms protein_coding Interval_18168 chr10 83192174 83192929 + 0 NA exon (ENSMUSG00000034612.7, exon 3 of 3) protein_coding-exon (ENSMUSG00000034612.7, exon 3 of 3) -34424 ENSMUSG00000088270.1 ENSMUSG00000088270 ENSMUST00000157645 Gm23122 snRNA Interval_126442 chr5 88593873 88594445 + 0 NA intron (ENSMUSG00000029291.11, intron 1 of 2) protein_coding-intron (ENSMUSG00000029291.11, intron 1 of 12) 39697 ENSMUSG00000070697.4 ENSMUSG00000070697 ENSMUST00000090413 Utp3 protein_coding Interval_87052 chr19 45815646 45816440 + 0 NA promoter-TSS (ENSMUSG00000025221.16) protein_coding-promoter-TSS (ENSMUSG00000025221.16) -12469 ENSMUSG00000025221.16 ENSMUSG00000025221 ENSMUST00000159446 Kcnip2 protein_coding Interval_49204 chr13 109429167 109429391 + 0 NA intron (ENSMUSG00000021699.17, intron 2 of 5) protein_coding-intron (ENSMUSG00000021699.17, intron 1 of 14) 104535 ENSMUSG00000076946.2 ENSMUSG00000076946 ENSMUST00000103758 Mir582 miRNA Interval_13319 chr10 14733703 14733938 + 0 NA intron (ENSMUSG00000019865.9, intron 2 of 5) protein_coding-intron (ENSMUSG00000019865.9, intron 2 of 3) 13482 ENSMUSG00000093798.2 ENSMUSG00000093798 ENSMUST00000177767 Gm8355 processed_pseudogene Interval_108629 chr3 129650058 129651676 + 0 NA Intergenic Intergenic 33374 ENSMUSG00000092701.1 ENSMUSG00000092701 ENSMUST00000174960 Gm24515 miRNA Interval_6547 chr1 115946276 115946481 + 0 NA intron (ENSMUSG00000070695.4, intron 3 of 23) protein_coding-intron (ENSMUSG00000070695.4, intron 3 of 23) 261622 ENSMUSG00000070695.4 ENSMUSG00000070695 ENSMUST00000043725 Cntnap5a protein_coding Interval_46767 chr13 70103176 70104985 + 0 NA intron (ENSMUSG00000113074.1, intron 2 of 2) lincRNA-intron (ENSMUSG00000113074.1, intron 2 of 2) 42522 ENSMUSG00000112998.1 ENSMUSG00000112998 ENSMUST00000221477 Gm47656 TEC Interval_69408 chr16 92951386 92951638 + 0 NA Intergenic Intergenic 89635 ENSMUSG00000116805.1 ENSMUSG00000116805 ENSMUST00000231501 Gm49723 lincRNA Interval_152433 chr7 133007499 133007701 + 0 NA intron (ENSMUSG00000030970.16, intron 2 of 9) protein_coding-intron (ENSMUSG00000030970.16, intron 2 of 9) -24048 ENSMUSG00000085663.1 ENSMUSG00000085663 ENSMUST00000131085 Gm15718 antisense Interval_118941 chr4 134583681 134584007 + 0 NA intron (ENSMUSG00000037306.13, intron 5 of 8) protein_coding-intron (ENSMUSG00000037306.13, intron 6 of 12) -15993 ENSMUSG00000099289.1 ENSMUSG00000099289 ENSMUST00000185007 Mir6403 miRNA Interval_116994 chr4 118836537 118837056 + 0 NA promoter-TSS (ENSMUSG00000110947.1) protein_coding-promoter-TSS (ENSMUSG00000110947.1) -517 ENSMUSG00000110947.1 ENSMUSG00000110947 ENSMUST00000076019 Olfr1333 protein_coding Interval_109870 chr3 149206123 149207196 + 0 NA Intergenic Intergenic -3612 ENSMUSG00000105357.1 ENSMUSG00000105357 ENSMUST00000195939 Gm42647 processed_pseudogene Interval_106045 chr3 91452625 91453181 + 0 NA Intergenic Intergenic -362100 ENSMUSG00000091175.2 ENSMUSG00000091175 ENSMUST00000166173 S100a7l2 protein_coding Interval_35069 chr12 17034938 17035616 + 0 NA Intergenic Intergenic -23723 ENSMUSG00000071398.8 ENSMUSG00000071398 ENSMUST00000189479 2410004P03Rik protein_coding Interval_111391 chr4 20295183 20296440 + 0 NA intron (ENSMUSG00000055761.14, intron 3 of 5) protein_coding-intron (ENSMUSG00000055761.14, intron 3 of 4) -47895 ENSMUSG00000086017.1 ENSMUSG00000086017 ENSMUST00000141819 Gm11872 antisense Interval_77154 chr17 86941375 86942036 + 0 NA intron (ENSMUSG00000117457.1, intron 2 of 2) lincRNA-intron (ENSMUSG00000117457.1, intron 2 of 2) 6192 ENSMUSG00000053375.8 ENSMUSG00000053375 ENSMUST00000235110 Atp6v1e2 protein_coding Interval_64732 chr16 14562498 14563059 + 0 NA intron (ENSMUSG00000075395.11, intron 1 of 10) protein_coding-intron (ENSMUSG00000075395.11, intron 1 of 10) -17443 ENSMUSG00000075395.11 ENSMUSG00000075395 ENSMUST00000100165 A630010A05Rik protein_coding Interval_103076 chr3 35084219 35085084 + 0 NA Intergenic Intergenic -162000 ENSMUSG00000098862.1 ENSMUSG00000098862 ENSMUST00000183357 Mir6378 miRNA Interval_167930 chr9 74511197 74511789 + 0 NA Intergenic Intergenic 49885 ENSMUSG00000101526.1 ENSMUSG00000101526 ENSMUST00000189842 Gm28622 lincRNA Interval_8274 chr1 136889050 136889240 + 0 NA intron (ENSMUSG00000026398.14, intron 7 of 8) protein_coding-intron (ENSMUSG00000026398.14, intron 7 of 8) 60028 ENSMUSG00000026398.14 ENSMUSG00000026398 ENSMUST00000195428 Nr5a2 protein_coding Interval_10502 chr1 171358399 171358593 + 0 NA TTS (ENSMUSG00000006412.10) protein_coding-TTS (ENSMUSG00000006412.10) 2106 ENSMUSG00000006412.10 ENSMUSG00000006412 ENSMUST00000138323 Pfdn2 protein_coding Interval_156341 chr8 47553594 47553980 + 0 NA TTS (ENSMUSG00000031568.16) protein_coding-TTS (ENSMUSG00000031568.16) 3329 ENSMUSG00000031568.16 ENSMUSG00000031568 ENSMUST00000183107 Rwdd4a protein_coding Interval_168024 chr9 75450824 75451324 + 0 NA intron (ENSMUSG00000042487.6, intron 5 of 9) protein_coding-intron (ENSMUSG00000042487.6, intron 6 of 11) 9550 ENSMUSG00000042487.6 ENSMUSG00000042487 ENSMUST00000213248 Leo1 protein_coding Interval_35726 chr12 28674877 28676057 + 0 NA promoter-TSS (ENSMUSG00000020629.12) protein_coding-promoter-TSS (ENSMUSG00000020629.12) -2338 ENSMUSG00000020629.12 ENSMUSG00000020629 ENSMUST00000138081 Adi1 protein_coding Interval_85850 chr19 32359127 32359580 + 0 NA intron (ENSMUSG00000040451.18, intron 1 of 5) protein_coding-intron (ENSMUSG00000040451.18, intron 1 of 9) -29863 ENSMUSG00000097787.2 ENSMUSG00000097787 ENSMUST00000181612 2700046G09Rik bidirectional_promoter_lncRNA Interval_50862 chr14 20293970 20295115 + 0 NA promoter-TSS (ENSMUSG00000021809.10) protein_coding-promoter-TSS (ENSMUSG00000021809.10) -16887 ENSMUSG00000021809.10 ENSMUSG00000021809 ENSMUST00000225728 Nudt13 protein_coding Interval_144776 chr7 28179087 28180466 + 0 NA promoter-TSS (ENSMUSG00000002409.18) protein_coding-promoter-TSS (ENSMUSG00000002409.18) 282 ENSMUSG00000002409.18 ENSMUSG00000002409 ENSMUST00000172467 Dyrk1b protein_coding Interval_144578 chr7 26373108 26373957 + 0 NA intron (ENSMUSG00000040614.14, intron 6 of 8) protein_coding-intron (ENSMUSG00000040614.14, intron 5 of 7) 30168 ENSMUSG00000040614.14 ENSMUSG00000040614 ENSMUST00000160277 Nlrp9c protein_coding Interval_97798 chr2 144148791 144149028 + 0 NA intron (ENSMUSG00000074758.10, intron 1 of 2) lincRNA-intron (ENSMUSG00000074758.10, intron 2 of 3) -5536 ENSMUSG00000082480.1 ENSMUSG00000082480 ENSMUST00000118911 Gm11687 processed_pseudogene Interval_156227 chr8 46258340 46258548 + 0 NA Intergenic Intergenic -2766 ENSMUSG00000071102.1 ENSMUSG00000071102 ENSMUST00000095320 Gm10313 processed_pseudogene Interval_26890 chr11 61333720 61334176 + 0 NA promoter-TSS (ENSMUSG00000064718.1) snRNA-promoter-TSS (ENSMUSG00000064718.1) -813 ENSMUSG00000064718.1 ENSMUSG00000064718 ENSMUST00000082784 Gm25929 snRNA Interval_107699 chr3 111268634 111269025 + 0 NA Intergenic Intergenic 54028 ENSMUSG00000106100.1 ENSMUSG00000106100 ENSMUST00000199881 Gm9314 processed_pseudogene Interval_75497 chr17 67473135 67473434 + 0 NA Intergenic Intergenic -78323 ENSMUSG00000087829.1 ENSMUSG00000087829 ENSMUST00000157204 Gm22277 misc_RNA Interval_104763 chr3 71568012 71568279 + 0 NA Intergenic Intergenic -102476 ENSMUSG00000103396.1 ENSMUSG00000103396 ENSMUST00000194825 Gm38305 processed_pseudogene Interval_9164 chr1 154282585 154282995 + 0 NA Intergenic Intergenic 25787 ENSMUSG00000100221.6 ENSMUSG00000100221 ENSMUST00000190980 4930532M18Rik lincRNA Interval_118394 chr4 131097207 131097598 + 0 NA Intergenic Intergenic -86928 ENSMUSG00000086262.7 ENSMUSG00000086262 ENSMUST00000153810 A930031H19Rik lincRNA Interval_130443 chr5 127670367 127670590 + 0 NA intron (ENSMUSG00000049971.17, intron 7 of 10) protein_coding-intron (ENSMUSG00000049971.17, intron 6 of 11) 38216 ENSMUSG00000049971.17 ENSMUSG00000049971 ENSMUST00000134529 Glt1d1 protein_coding Interval_136961 chr6 65098393 65098676 + 0 NA intron (ENSMUSG00000029920.9, intron 14 of 21) protein_coding-intron (ENSMUSG00000029920.9, intron 16 of 23) 24393 ENSMUSG00000029919.5 ENSMUSG00000029919 ENSMUST00000170252 Hpgds protein_coding Interval_150829 chr7 115293436 115293641 + 0 NA Intergenic Intergenic 121265 ENSMUSG00000099211.1 ENSMUSG00000099211 ENSMUST00000183778 Gm27684 miRNA Interval_137338 chr6 71466692 71467135 + 0 NA promoter-TSS (ENSMUSG00000107460.1) TEC-promoter-TSS (ENSMUSG00000107460.1) -851 ENSMUSG00000107460.1 ENSMUSG00000107460 ENSMUST00000204118 Gm44186 TEC Interval_48136 chr13 96542243 96543697 + 0 NA promoter-TSS (ENSMUSG00000021668.15) protein_coding-promoter-TSS (ENSMUSG00000021668.15) -630 ENSMUSG00000021668.15 ENSMUSG00000021668 ENSMUST00000222100 Polk protein_coding Interval_29536 chr11 84751965 84752181 + 0 NA Intergenic Intergenic 25756 ENSMUSG00000087407.1 ENSMUSG00000087407 ENSMUST00000155046 Gm11431 lincRNA Interval_77869 chr18 4880555 4881221 + 0 NA Intergenic Intergenic 68402 ENSMUSG00000097043.1 ENSMUSG00000097043 ENSMUST00000180904 Gm10556 lincRNA Interval_83800 chr19 4768807 4769433 + 0 NA intron (ENSMUSG00000096370.8, intron 2 of 2) protein_coding-intron (ENSMUSG00000096370.8, intron 2 of 2) -3949 ENSMUSG00000103651.1 ENSMUSG00000103651 ENSMUST00000195512 Gm37206 TEC Interval_14739 chr10 39520465 39520726 + 0 NA intron (ENSMUSG00000019843.14, intron 4 of 12) protein_coding-intron (ENSMUSG00000019843.14, intron 5 of 13) 37467 ENSMUSG00000087014.1 ENSMUSG00000087014 ENSMUST00000153722 Gm16364 antisense Interval_156075 chr8 43574839 43575266 + 0 NA intron (ENSMUSG00000048516.2, intron 1 of 1) protein_coding-intron (ENSMUSG00000048516.2, intron 1 of 1) 1655 ENSMUSG00000048516.2 ENSMUSG00000048516 ENSMUST00000049577 Adam26a protein_coding Interval_77552 chr17 91431687 91432601 + 0 NA Intergenic Intergenic -84572 ENSMUSG00000117471.1 ENSMUSG00000117471 ENSMUST00000233999 Gm49988 processed_pseudogene Interval_68339 chr16 73495009 73497272 + 0 NA Intergenic Intergenic 11283 ENSMUSG00000116806.1 ENSMUSG00000116806 ENSMUST00000231349 Gm49680 processed_pseudogene Interval_49140 chr13 108404156 108404651 + 0 NA intron (ENSMUSG00000021697.12, intron 11 of 12) protein_coding-intron (ENSMUSG00000021697.12, intron 11 of 12) 46977 ENSMUSG00000021697.12 ENSMUSG00000021697 ENSMUST00000172402 Depdc1b protein_coding Interval_152538 chr7 134014043 134014240 + 0 NA intron (ENSMUSG00000054555.11, intron 3 of 6) protein_coding-intron (ENSMUSG00000054555.11, intron 3 of 22) -74400 ENSMUSG00000093032.1 ENSMUSG00000093032 ENSMUST00000175291 Gm23631 miRNA Interval_141229 chr6 125955149 125955399 + 0 NA intron (ENSMUSG00000038115.16, intron 15 of 25) protein_coding-intron (ENSMUSG00000038115.16, intron 15 of 15) 70859 ENSMUSG00000088959.1 ENSMUSG00000088959 ENSMUST00000158334 Gm24947 snRNA Interval_48328 chr13 98240101 98241317 + 0 NA Intergenic Intergenic 13448 ENSMUSG00000041747.3 ENSMUSG00000041747 ENSMUST00000224842 Utp15 protein_coding Interval_82364 chr18 72947048 72947250 + 0 NA Intergenic Intergenic -26059 ENSMUSG00000118316.1 ENSMUSG00000118316 ENSMUST00000236243 Gm31908 lincRNA Interval_56461 chr14 118916985 118917184 + 0 NA promoter-TSS (ENSMUSG00000042156.16) protein_coding-promoter-TSS (ENSMUSG00000042156.16) -20892 ENSMUSG00000022136.8 ENSMUSG00000022136 ENSMUST00000022734 Dnajc3 protein_coding Interval_172157 chrX 8065914 8066215 + 0 NA intron (ENSMUSG00000039231.18, intron 3 of 4) protein_coding-intron (ENSMUSG00000039231.18, intron 3 of 5) 8557 ENSMUSG00000039231.18 ENSMUSG00000039231 ENSMUST00000127617 Suv39h1 protein_coding Interval_118253 chr4 129834826 129835814 + 0 NA intron (ENSMUSG00000028788.14, intron 1 of 5) protein_coding-intron (ENSMUSG00000028788.14, intron 1 of 5) 14612 ENSMUSG00000028788.14 ENSMUSG00000028788 ENSMUST00000141754 Ptp4a2 protein_coding Interval_18716 chr10 89644724 89645075 + 0 NA intron (ENSMUSG00000069539.11, intron 16 of 17) protein_coding-intron (ENSMUSG00000069539.11, intron 16 of 17) 41369 ENSMUSG00000069539.11 ENSMUSG00000069539 ENSMUST00000174429 Scyl2 protein_coding Interval_158630 chr8 84862391 84862634 + 0 NA intron (ENSMUSG00000003808.18, intron 4 of 12) protein_coding-intron (ENSMUSG00000003808.18, intron 4 of 12) -5435 ENSMUSG00000098331.1 ENSMUSG00000098331 ENSMUST00000184765 Mir7069 miRNA Interval_168962 chr9 89790446 89790796 + 0 NA Intergenic Intergenic 11707 ENSMUSG00000065596.1 ENSMUSG00000065596 ENSMUST00000083662 Mir184 miRNA Interval_153228 chr7 142646751 142647186 + 0 NA Intergenic Intergenic 8028 ENSMUSG00000070140.1 ENSMUSG00000070140 ENSMUST00000093631 Mir483 miRNA Interval_52821 chr14 50876257 50876534 + 0 NA intron (ENSMUSG00000097431.2, intron 2 of 2) antisense-intron (ENSMUSG00000097431.2, intron 1 of 1) 6011 ENSMUSG00000097431.2 ENSMUSG00000097431 ENSMUST00000228254 Gm26782 antisense Interval_90375 chr2 30061412 30062952 + 0 NA promoter-TSS (ENSMUSG00000054766.13) protein_coding-promoter-TSS (ENSMUSG00000054766.13) 428 ENSMUSG00000054766.13 ENSMUSG00000054766 ENSMUST00000147590 Set protein_coding Interval_36880 chr12 54910181 54910562 + 0 NA intron (ENSMUSG00000035021.13, intron 20 of 26) protein_coding-intron (ENSMUSG00000035021.13, intron 20 of 26) 19968 ENSMUSG00000035021.13 ENSMUSG00000035021 ENSMUST00000173529 Baz1a protein_coding Interval_142803 chr6 145830231 145830866 + 0 NA Intergenic Intergenic -32749 ENSMUSG00000108126.1 ENSMUSG00000108126 ENSMUST00000203443 Gm43909 TEC Interval_107445 chr3 107754028 107754920 + 0 NA intron (ENSMUSG00000014599.10, intron 3 of 5) protein_coding-intron (ENSMUSG00000014599.10, intron 3 of 8) -3733 ENSMUSG00000014599.10 ENSMUSG00000014599 ENSMUST00000153114 Csf1 protein_coding Interval_54692 chr14 73371580 73372192 + 0 NA intron (ENSMUSG00000022108.8, intron 1 of 5) protein_coding-intron (ENSMUSG00000022108.8, intron 1 of 5) -2762 ENSMUSG00000022108.8 ENSMUSG00000022108 ENSMUST00000228637 Itm2b protein_coding Interval_47524 chr13 86324681 86325030 + 0 NA Intergenic Intergenic 89028 ENSMUSG00000098152.1 ENSMUSG00000098152 ENSMUST00000182392 Gm27025 processed_pseudogene Interval_174169 chrX 137049013 137050200 + 0 NA promoter-TSS (ENSMUSG00000042595.7) protein_coding-promoter-TSS (ENSMUSG00000042595.7) 12 ENSMUSG00000042595.7 ENSMUSG00000042595 ENSMUST00000047852 Fam199x protein_coding Interval_11754 chr1 185216142 185216596 + 0 NA intron (ENSMUSG00000039318.12, intron 1 of 34) protein_coding-intron (ENSMUSG00000039318.12, intron 1 of 34) -26538 ENSMUSG00000077571.1 ENSMUSG00000077571 ENSMUST00000104383 Snora36b snoRNA Interval_143741 chr7 16003854 16005222 + 0 NA intron (ENSMUSG00000070808.4, intron 1 of 14) protein_coding-intron (ENSMUSG00000070808.4, intron 1 of 14) 32655 ENSMUSG00000109984.1 ENSMUSG00000109984 ENSMUST00000210035 Gm38948 lincRNA Interval_148019 chr7 78190885 78191315 + 0 NA exon (ENSMUSG00000059146.12, exon 17 of 17) protein_coding-exon (ENSMUSG00000059146.12, exon 17 of 17) 21599 ENSMUSG00000108630.1 ENSMUSG00000108630 ENSMUST00000205611 Gm44607 TEC Interval_28801 chr11 78408143 78409099 + 0 NA intron (ENSMUSG00000001095.5, intron 1 of 11) protein_coding-intron (ENSMUSG00000001095.5, intron 1 of 11) 13596 ENSMUSG00000001095.5 ENSMUSG00000001095 ENSMUST00000001122 Slc13a2 protein_coding Interval_112973 chr4 46544034 46544570 + 0 NA intron (ENSMUSG00000028337.14, intron 6 of 7) protein_coding-intron (ENSMUSG00000028337.14, intron 7 of 12) -8180 ENSMUSG00000039853.18 ENSMUSG00000039853 ENSMUST00000142606 Trim14 protein_coding Interval_144804 chr7 28353947 28355152 + 0 NA Intergenic Intergenic 3041 ENSMUSG00000077711.1 ENSMUSG00000077711 ENSMUST00000104523 AF357399 snoRNA Interval_55878 chr14 101742180 101743196 + 0 NA intron (ENSMUSG00000033060.16, intron 1 of 30) protein_coding-intron (ENSMUSG00000033060.16, intron 1 of 30) -12873 ENSMUSG00000053821.4 ENSMUSG00000053821 ENSMUST00000066461 Gm9922 bidirectional_promoter_lncRNA Interval_1769 chr1 33657527 33658605 + 0 NA TTS (ENSMUSG00000102093.1) processed_pseudogene-TTS (ENSMUSG00000102093.1) 285 ENSMUSG00000102093.1 ENSMUSG00000102093 ENSMUST00000185377 Gm17813 processed_pseudogene Interval_88070 chr19 58806113 58806841 + 0 NA intron (ENSMUSG00000025092.7, intron 7 of 11) protein_coding-intron (ENSMUSG00000025092.7, intron 7 of 11) -13194 ENSMUSG00000026931.10 ENSMUSG00000026931 ENSMUST00000166692 1700019N19Rik protein_coding Interval_46552 chr13 67072789 67073445 + 0 NA TTS (ENSMUSG00000100235.8) protein_coding-TTS (ENSMUSG00000100235.8) 8428 ENSMUSG00000058883.16 ENSMUSG00000058883 ENSMUST00000109743 Zfp708 protein_coding Interval_142309 chr6 140567450 140567667 + 0 NA intron (ENSMUSG00000030231.11, intron 10 of 19) protein_coding-intron (ENSMUSG00000030231.11, intron 10 of 19) 3990 ENSMUSG00000030231.11 ENSMUSG00000030231 ENSMUST00000204528 Plekha5 protein_coding Interval_147923 chr7 75571965 75572400 + 0 NA intron (ENSMUSG00000066406.16, intron 3 of 5) protein_coding-intron (ENSMUSG00000066406.16, intron 3 of 36) 11568 ENSMUSG00000108557.1 ENSMUSG00000108557 ENSMUST00000205544 Gm44835 TEC Interval_141873 chr6 135048885 135049911 + 0 NA Intergenic Intergenic -16253 ENSMUSG00000046733.7 ENSMUSG00000046733 ENSMUST00000050104 Gprc5a protein_coding Interval_132039 chr5 142433263 142433563 + 0 NA intron (ENSMUSG00000056493.9, intron 1 of 8) protein_coding-intron (ENSMUSG00000056493.9, intron 1 of 8) -30531 ENSMUSG00000039623.13 ENSMUSG00000039623 ENSMUST00000197293 Ap5z1 protein_coding Interval_88534 chr2 5894759 5895853 + 0 NA promoter-TSS (ENSMUSG00000025816.15) protein_coding-promoter-TSS (ENSMUSG00000025816.15) 28 ENSMUSG00000025816.15 ENSMUSG00000025816 ENSMUST00000194565 Sec61a2 protein_coding Interval_118914 chr4 134430368 134431192 + 0 NA Intergenic Intergenic 19391 ENSMUSG00000087343.1 ENSMUSG00000087343 ENSMUST00000131110 1700021N21Rik antisense Interval_3560 chr1 59591564 59592667 + 0 NA intron (ENSMUSG00000026021.15, intron 3 of 3) protein_coding-intron (ENSMUSG00000047361.16, intron 12 of 19) 9719 ENSMUSG00000047361.16 ENSMUSG00000047361 ENSMUST00000190490 Gm973 protein_coding Interval_68676 chr16 84550073 84550658 + 0 NA Intergenic Intergenic 34996 ENSMUSG00000110358.1 ENSMUSG00000110358 ENSMUST00000210306 A730009L09Rik protein_coding Interval_153813 chr8 8938659 8939471 + 0 NA Intergenic Intergenic -6366 ENSMUSG00000109346.1 ENSMUSG00000109346 ENSMUST00000209045 Gm44515 lincRNA Interval_103662 chr3 51448713 51448950 + 0 NA TTS (ENSMUSG00000063273.11) protein_coding-TTS (ENSMUSG00000063273.11) 7914 ENSMUSG00000063273.11 ENSMUSG00000063273 ENSMUST00000193267 Naa15 protein_coding Interval_82117 chr18 67819643 67820581 + 0 NA intron (ENSMUSG00000024542.9, intron 11 of 15) protein_coding-intron (ENSMUSG00000024542.9, intron 11 of 45) -20169 ENSMUSG00000118134.1 ENSMUSG00000118134 ENSMUST00000237968 4930549G23Rik antisense Interval_123755 chr5 35241214 35242086 + 0 NA Intergenic Intergenic -36669 ENSMUSG00000045318.6 ENSMUSG00000045318 ENSMUST00000049545 Adra2c protein_coding Interval_164027 chr9 31029500 31031279 + 0 NA promoter-TSS (ENSMUSG00000047412.16) protein_coding-promoter-TSS (ENSMUSG00000047412.16) -20326 ENSMUSG00000111673.1 ENSMUSG00000111673 ENSMUST00000216803 Gm29724 antisense Interval_22441 chr11 10135094 10135526 + 0 NA Intergenic Intergenic -104027 ENSMUSG00000082312.1 ENSMUSG00000082312 ENSMUST00000117538 Gm11996 processed_pseudogene Interval_153521 chr8 3086375 3086613 + 0 NA Intergenic Intergenic -6875 ENSMUSG00000090795.1 ENSMUSG00000090795 ENSMUST00000169661 Gm7346 unprocessed_pseudogene Interval_2254 chr1 37409724 37410333 + 0 NA exon (ENSMUSG00000026113.17, exon 26 of 26) protein_coding-exon (ENSMUSG00000026113.17, exon 26 of 26) 19972 ENSMUSG00000026112.7 ENSMUSG00000026112 ENSMUST00000192179 Coa5 protein_coding Interval_62858 chr15 97458684 97459226 + 0 NA Intergenic Intergenic 97753 ENSMUSG00000044250.8 ENSMUSG00000044250 ENSMUST00000226495 Pced1b protein_coding Interval_120907 chr4 151473886 151474750 + 0 NA intron (ENSMUSG00000014592.21, intron 5 of 7) protein_coding-intron (ENSMUSG00000014592.21, intron 4 of 23) 97848 ENSMUSG00000085593.1 ENSMUSG00000085593 ENSMUST00000129097 4930589P08Rik antisense Interval_5574 chr1 89917738 89918976 + 0 NA Intergenic Intergenic 10828 ENSMUSG00000034486.8 ENSMUSG00000034486 ENSMUST00000187633 Gbx2 protein_coding Interval_54957 chr14 76478066 76480608 + 0 NA intron (ENSMUSG00000022010.19, intron 1 of 2) protein_coding-intron (ENSMUSG00000022010.19, intron 1 of 2) -47255 ENSMUSG00000115092.1 ENSMUSG00000115092 ENSMUST00000227784 E130202H07Rik lincRNA Interval_158463 chr8 83866847 83867364 + 0 NA Intergenic Intergenic -33630 ENSMUSG00000013033.16 ENSMUSG00000013033 ENSMUST00000131018 Adgrl1 protein_coding Interval_67938 chr16 59846543 59847279 + 0 NA intron (ENSMUSG00000055540.15, intron 5 of 8) protein_coding-intron (ENSMUSG00000055540.15, intron 11 of 17) 207702 ENSMUSG00000116894.1 ENSMUSG00000116894 ENSMUST00000232302 4930547E14Rik processed_transcript Interval_63411 chr15 100908600 100909712 + 0 NA intron (ENSMUSG00000023033.14, intron 2 of 2) protein_coding-intron (ENSMUSG00000023033.14, intron 1 of 26) -60966 ENSMUSG00000023033.14 ENSMUSG00000023033 ENSMUST00000201246 Scn8a protein_coding Interval_147714 chr7 72527457 72527650 + 0 NA Intergenic Intergenic -74436 ENSMUSG00000103673.1 ENSMUSG00000103673 ENSMUST00000192910 Gm37620 TEC Interval_58859 chr15 39241077 39243727 + 0 NA intron (ENSMUSG00000037386.16, intron 1 of 25) protein_coding-intron (ENSMUSG00000037386.16, intron 1 of 26) 61891 ENSMUSG00000098021.2 ENSMUSG00000098021 ENSMUST00000182394 Gm9522 processed_pseudogene Interval_34410 chr12 3917346 3918309 + 0 NA Intergenic Intergenic 14213 ENSMUSG00000112271.1 ENSMUSG00000112271 ENSMUST00000220237 Gm9088 processed_pseudogene Interval_127976 chr5 110016195 110016558 + 0 NA Intergenic Intergenic 9760 ENSMUSG00000066613.14 ENSMUSG00000066613 ENSMUST00000187241 Zfp932 protein_coding Interval_64216 chr16 9248489 9250307 + 0 NA Intergenic Intergenic 90628 ENSMUSG00000116123.1 ENSMUSG00000116123 ENSMUST00000229655 Gm49451 lincRNA Interval_164926 chr9 43144414 43145398 + 0 NA intron (ENSMUSG00000032015.16, intron 5 of 12) protein_coding-intron (ENSMUSG00000032015.16, intron 5 of 12) -1702 ENSMUSG00000032015.16 ENSMUSG00000032015 ENSMUST00000213862 Pou2f3 protein_coding Interval_81961 chr18 66447957 66449390 + 0 NA Intergenic Intergenic -9902 ENSMUSG00000024521.8 ENSMUSG00000024521 ENSMUST00000236933 Pmaip1 protein_coding Interval_65496 chr16 22799726 22801059 + 0 NA Intergenic Intergenic 11185 ENSMUSG00000033501.5 ENSMUSG00000033501 ENSMUST00000040592 Crygs protein_coding Interval_149968 chr7 103912371 103913464 + 0 NA Intergenic Intergenic 9282 ENSMUSG00000110259.2 ENSMUSG00000110259 ENSMUST00000209528 Olfr65 protein_coding Interval_170372 chr9 107526334 107527361 + 0 NA intron (ENSMUSG00000010066.15, intron 35 of 37) protein_coding-intron (ENSMUSG00000010066.15, intron 35 of 37) 5335 ENSMUSG00000010066.15 ENSMUSG00000010066 ENSMUST00000168959 Cacna2d2 protein_coding Interval_50028 chr13 119822763 119823017 + 0 NA Intergenic Intergenic 7326 ENSMUSG00000094237.2 ENSMUSG00000094237 ENSMUST00000179455 AF067063 protein_coding Interval_166282 chr9 58008798 58009778 + 0 NA intron (ENSMUSG00000032323.13, intron 1 of 3) protein_coding-intron (ENSMUSG00000032323.13, intron 1 of 3) -5709 ENSMUSG00000032323.13 ENSMUSG00000032323 ENSMUST00000188539 Cyp11a1 protein_coding Interval_157485 chr8 70666922 70667435 + 0 NA Intergenic Intergenic -6254 ENSMUSG00000031848.15 ENSMUSG00000031848 ENSMUST00000153689 Lsm4 protein_coding Interval_136109 chr6 51076919 51078813 + 0 NA Intergenic Intergenic 110598 ENSMUSG00000108153.1 ENSMUSG00000108153 ENSMUST00000203677 Gm44402 processed_pseudogene Interval_36379 chr12 42833807 42834472 + 0 NA Intergenic Intergenic 181320 ENSMUSG00000112407.1 ENSMUSG00000112407 ENSMUST00000219475 Gm33340 lincRNA Interval_18542 chr10 87285903 87287146 + 0 NA intron (ENSMUSG00000112213.1, intron 2 of 2) lincRNA-intron (ENSMUSG00000112213.1, intron 2 of 2) -2969 ENSMUSG00000103862.3 ENSMUSG00000103862 ENSMUST00000193976 Gm10764 TEC Interval_142868 chr6 146595292 146595679 + 0 NA intron (ENSMUSG00000040242.14, intron 5 of 5) protein_coding-intron (ENSMUSG00000040242.14, intron 5 of 5) 17545 ENSMUSG00000040242.14 ENSMUSG00000040242 ENSMUST00000160697 Fgfr1op2 protein_coding Interval_173188 chrX 73964492 73964987 + 0 NA intron (ENSMUSG00000031386.14, intron 1 of 25) protein_coding-intron (ENSMUSG00000031386.14, intron 1 of 25) -17307 ENSMUSG00000031386.14 ENSMUSG00000031386 ENSMUST00000128325 Hcfc1 protein_coding Interval_6376 chr1 106545186 106545794 + 0 NA intron (ENSMUSG00000057329.7, intron 1 of 1) protein_coding-intron (ENSMUSG00000057329.7, intron 1 of 1) 1141 ENSMUSG00000098344.1 ENSMUSG00000098344 ENSMUST00000183743 Mir3473f miRNA Interval_10611 chr1 172206197 172206906 + 0 NA intron (ENSMUSG00000013698.12, intron 1 of 3) protein_coding-intron (ENSMUSG00000013698.12, intron 1 of 3) 146 ENSMUSG00000013698.12 ENSMUSG00000013698 ENSMUST00000152432 Pea15a protein_coding Interval_162977 chr9 14001408 14001976 + 0 NA Intergenic Intergenic 56411 ENSMUSG00000111871.1 ENSMUSG00000111871 ENSMUST00000214014 Gm47557 lincRNA Interval_35895 chr12 31694536 31695251 + 0 NA intron (ENSMUSG00000035933.5, intron 6 of 22) protein_coding-intron (ENSMUSG00000035933.5, intron 6 of 22) 19033 ENSMUSG00000044067.7 ENSMUSG00000044067 ENSMUST00000174480 Gpr22 protein_coding Interval_3688 chr1 60850631 60851304 + 0 NA Intergenic Intergenic -29371 ENSMUSG00000102549.1 ENSMUSG00000102549 ENSMUST00000193735 Gm38137 TEC Interval_40873 chr12 109009932 109010887 + 0 NA intron (ENSMUSG00000040877.16, intron 4 of 6) protein_coding-intron (ENSMUSG00000040877.16, intron 5 of 7) -18758 ENSMUSG00000113478.1 ENSMUSG00000113478 ENSMUST00000220743 Gm18405 processed_pseudogene Interval_19902 chr10 111100072 111100286 + 0 NA Intergenic Intergenic 2692 ENSMUSG00000112165.1 ENSMUSG00000112165 ENSMUST00000218334 Gm48851 processed_pseudogene Interval_53362 chr14 56654092 56654918 + 0 NA promoter-TSS (ENSMUSG00000054509.7) protein_coding-promoter-TSS (ENSMUSG00000054509.7) -830 ENSMUSG00000054509.7 ENSMUSG00000054509 ENSMUST00000162312 Parp4 protein_coding Interval_52848 chr14 51063071 51065963 + 0 NA Intergenic Intergenic -6856 ENSMUSG00000068407.3 ENSMUSG00000068407 ENSMUST00000227764 Rnase12 protein_coding Interval_161648 chr8 121790087 121790647 + 0 NA TTS (ENSMUSG00000025318.13) protein_coding-TTS (ENSMUSG00000025318.13) -16048 ENSMUSG00000092418.1 ENSMUSG00000092418 ENSMUST00000173993 Gm20406 antisense Interval_61201 chr15 79941067 79941457 + 0 NA intron (ENSMUSG00000053411.16, intron 1 of 5) protein_coding-intron (ENSMUSG00000053411.16, intron 1 of 5) -7432 ENSMUSG00000053411.16 ENSMUSG00000053411 ENSMUST00000177061 Cbx7 protein_coding Interval_65737 chr16 26427245 26427787 + 0 NA Intergenic Intergenic -35619 ENSMUSG00000038148.13 ENSMUSG00000038148 ENSMUST00000115302 Cldn16 protein_coding Interval_159217 chr8 91836892 91837350 + 0 NA Intergenic Intergenic -28750 ENSMUSG00000099664.1 ENSMUSG00000099664 ENSMUST00000191594 Gm28511 lincRNA Interval_165547 chr9 49246790 49247278 + 0 NA Intergenic Intergenic -3497 ENSMUSG00000054156.8 ENSMUSG00000054156 ENSMUST00000067007 Gm4894 protein_coding Interval_83675 chr19 3651378 3651621 + 0 NA intron (ENSMUSG00000024913.16, intron 3 of 7) protein_coding-intron (ENSMUSG00000024913.16, intron 3 of 22) 35062 ENSMUSG00000024913.16 ENSMUSG00000024913 ENSMUST00000176867 Lrp5 protein_coding Interval_73069 chr17 34603378 34604577 + 0 NA promoter-TSS (ENSMUSG00000015478.13) protein_coding-promoter-TSS (ENSMUSG00000015478.13) -601 ENSMUSG00000015478.13 ENSMUSG00000015478 ENSMUST00000174045 Rnf5 protein_coding Interval_131581 chr5 138275332 138275907 + 0 NA TTS (ENSMUSG00000029510.15) protein_coding-TTS (ENSMUSG00000029510.15) -2818 ENSMUSG00000075593.10 ENSMUSG00000075593 ENSMUST00000161665 Gal3st4 protein_coding Interval_62381 chr15 91372778 91373099 + 0 NA intron (ENSMUSG00000036298.10, intron 4 of 9) protein_coding-intron (ENSMUSG00000036298.10, intron 4 of 9) 39279 ENSMUSG00000036298.10 ENSMUSG00000036298 ENSMUST00000109282 Slc2a13 protein_coding Interval_123966 chr5 36904771 36905677 + 0 NA intron (ENSMUSG00000029120.10, intron 1 of 3) protein_coding-intron (ENSMUSG00000029120.10, intron 1 of 8) -4890 ENSMUSG00000106934.1 ENSMUSG00000106934 ENSMUST00000202009 Gm42506 TEC Interval_162332 chr8 127178360 127178956 + 0 NA intron (ENSMUSG00000025812.18, intron 1 of 1) protein_coding-intron (ENSMUSG00000025812.18, intron 2 of 23) 7254 ENSMUSG00000025812.18 ENSMUSG00000025812 ENSMUST00000159940 Pard3 protein_coding Interval_152480 chr7 133310935 133311858 + 0 NA Intergenic Intergenic 21805 ENSMUSG00000109619.1 ENSMUSG00000109619 ENSMUST00000209700 Gm45672 lincRNA Interval_44223 chr13 42391414 42392157 + 0 NA Intergenic Intergenic 80992 ENSMUSG00000113000.1 ENSMUSG00000113000 ENSMUST00000222369 Gm6049 processed_pseudogene Interval_32186 chr11 105996955 105997244 + 0 NA intron (ENSMUSG00000101605.1, intron 6 of 13) protein_coding-intron (ENSMUSG00000101605.1, intron 6 of 13) 2424 ENSMUSG00000101605.1 ENSMUSG00000101605 ENSMUST00000190995 Ace3 protein_coding Interval_114316 chr4 72579097 72579597 + 0 NA Intergenic Intergenic 36681 ENSMUSG00000083372.1 ENSMUSG00000083372 ENSMUST00000117763 Gm11235 processed_pseudogene Interval_160857 chr8 113939627 113940554 + 0 NA Intergenic Intergenic -94786 ENSMUSG00000053399.9 ENSMUSG00000053399 ENSMUST00000212527 Adamts18 protein_coding Interval_55847 chr14 101460640 101461176 + 0 NA intron (ENSMUSG00000033083.16, intron 11 of 18) protein_coding-intron (ENSMUSG00000033083.16, intron 11 of 18) 112106 ENSMUSG00000115319.1 ENSMUSG00000115319 ENSMUST00000228293 Gm34417 processed_pseudogene Interval_131007 chr5 134513911 134514927 + 0 NA intron (ENSMUSG00000063146.11, intron 1 of 1) protein_coding-intron (ENSMUSG00000063146.11, intron 6 of 15) 1859 ENSMUSG00000063146.11 ENSMUSG00000063146 ENSMUST00000202408 Clip2 protein_coding Interval_102132 chr3 18312906 18313472 + 0 NA Intergenic Intergenic 13879 ENSMUSG00000104801.1 ENSMUSG00000104801 ENSMUST00000197097 Gm43834 TEC Interval_112588 chr4 43425521 43426051 + 0 NA exon (ENSMUSG00000035969.15, exon 10 of 12) protein_coding-exon (ENSMUSG00000035969.15, exon 10 of 12) 3331 ENSMUSG00000042788.12 ENSMUSG00000042788 ENSMUST00000149676 Fam166b protein_coding Interval_90190 chr2 28915563 28916585 + 0 NA promoter-TSS (ENSMUSG00000026805.14) protein_coding-promoter-TSS (ENSMUSG00000026805.14) -569 ENSMUSG00000026805.14 ENSMUSG00000026805 ENSMUST00000174027 Barhl1 protein_coding Interval_98489 chr2 152752397 152752587 + 0 NA Intergenic Intergenic -2602 ENSMUSG00000009876.13 ENSMUSG00000009876 ENSMUST00000109821 Cox4i2 protein_coding Interval_60592 chr15 75553051 75553299 + 0 NA exon (ENSMUSG00000022577.17, exon 10 of 10) protein_coding-exon (ENSMUSG00000022577.17, exon 10 of 10) 13871 ENSMUSG00000022577.17 ENSMUSG00000022577 ENSMUST00000228961 Ly6h protein_coding Interval_170603 chr9 109189299 109189517 + 0 NA intron (ENSMUSG00000049314.11, intron 3 of 8) protein_coding-intron (ENSMUSG00000049314.11, intron 4 of 9) 6554 ENSMUSG00000049314.11 ENSMUSG00000049314 ENSMUST00000199102 Fbxw13 protein_coding Interval_20494 chr10 117936302 117936640 + 0 NA intron (ENSMUSG00000112500.1, intron 3 of 3) lincRNA-intron (ENSMUSG00000112500.1, intron 3 of 3) 11012 ENSMUSG00000112500.1 ENSMUSG00000112500 ENSMUST00000217950 4933411E08Rik lincRNA Interval_122040 chr5 14473164 14473619 + 0 NA Intergenic Intergenic 66461 ENSMUSG00000097976.1 ENSMUSG00000097976 ENSMUST00000182496 Gm26918 antisense Interval_125287 chr5 65959897 65960866 + 0 NA intron (ENSMUSG00000029205.12, intron 2 of 3) protein_coding-intron (ENSMUSG00000029205.12, intron 1 of 3) -3470 ENSMUSG00000107049.1 ENSMUSG00000107049 ENSMUST00000202931 Gm43771 TEC Interval_137344 chr6 71560292 71560793 + 0 NA intron (ENSMUSG00000053119.11, intron 3 of 3) protein_coding-intron (ENSMUSG00000053119.11, intron 2 of 5) -16428 ENSMUSG00000107406.1 ENSMUSG00000107406 ENSMUST00000205011 1700040L08Rik antisense Interval_145318 chr7 32490688 32491014 + 0 NA Intergenic Intergenic -4787 ENSMUSG00000100751.1 ENSMUSG00000100751 ENSMUST00000187732 Gm5116 processed_pseudogene Interval_78579 chr18 14885148 14885556 + 0 NA intron (ENSMUSG00000054321.7, intron 14 of 14) protein_coding-intron (ENSMUSG00000054321.7, intron 14 of 14) 38759 ENSMUSG00000117436.1 ENSMUSG00000117436 ENSMUST00000234412 Gm9474 processed_pseudogene Interval_14550 chr10 35384662 35384969 + 0 NA Intergenic Intergenic 100581 ENSMUSG00000111753.1 ENSMUSG00000111753 ENSMUST00000214107 1700054O05Rik lincRNA Interval_156476 chr8 48543862 48545123 + 0 NA intron (ENSMUSG00000031561.16, intron 2 of 26) protein_coding-intron (ENSMUSG00000031561.16, intron 2 of 28) 10821 ENSMUSG00000031561.16 ENSMUSG00000031561 ENSMUST00000211812 Tenm3 protein_coding Interval_70248 chr17 7227972 7228342 + 0 NA intron (ENSMUSG00000023809.10, intron 1 of 7) protein_coding-intron (ENSMUSG00000023809.10, intron 2 of 20) 58030 ENSMUSG00000023809.10 ENSMUSG00000023809 ENSMUST00000231530 Rps6ka2 protein_coding Interval_50160 chr14 8356034 8358727 + 0 NA intron (ENSMUSG00000021749.6, intron 5 of 9) protein_coding-intron (ENSMUSG00000021749.6, intron 5 of 9) -10060 ENSMUSG00000114532.1 ENSMUSG00000114532 ENSMUST00000225127 2610318M16Rik antisense Interval_12567 chr10 3302353 3302651 + 0 NA promoter-TSS (ENSMUSG00000111114.1) processed_pseudogene-promoter-TSS (ENSMUSG00000111114.1) -547 ENSMUSG00000111114.1 ENSMUSG00000111114 ENSMUST00000215318 Gm18703 processed_pseudogene Interval_512 chr1 6807869 6808431 + 0 NA intron (ENSMUSG00000033740.17, intron 7 of 21) protein_coding-intron (ENSMUSG00000033740.17, intron 9 of 23) 56001 ENSMUSG00000103329.2 ENSMUSG00000103329 ENSMUST00000195780 Gm42492 TEC Interval_142674 chr6 144955932 144957405 + 0 NA Intergenic Intergenic 81520 ENSMUSG00000088867.1 ENSMUSG00000088867 ENSMUST00000158242 Gm23071 rRNA Interval_155009 chr8 25654786 25655111 + 0 NA intron (ENSMUSG00000054823.16, intron 4 of 9) protein_coding-intron (ENSMUSG00000054823.16, intron 3 of 22) 22998 ENSMUSG00000088037.1 ENSMUSG00000088037 ENSMUST00000157412 Gm24992 snoRNA Interval_20021 chr10 112105395 112106173 + 0 NA intron (ENSMUSG00000020214.10, intron 4 of 5) protein_coding-intron (ENSMUSG00000020214.10, intron 4 of 5) -4236 ENSMUSG00000089667.1 ENSMUSG00000089667 ENSMUST00000161922 Gm15914 processed_pseudogene Interval_9053 chr1 153307841 153309571 + 0 NA intron (ENSMUSG00000026478.14, intron 1 of 27) protein_coding-intron (ENSMUSG00000026478.14, intron 1 of 27) 3274 ENSMUSG00000079138.3 ENSMUSG00000079138 ENSMUST00000110797 Gm8818 processed_pseudogene Interval_70212 chr17 6747184 6747657 + 0 NA intron (ENSMUSG00000052397.8, intron 6 of 12) protein_coding-intron (ENSMUSG00000052397.8, intron 6 of 12) -4599 ENSMUSG00000052397.8 ENSMUSG00000052397 ENSMUST00000131131 Ezr protein_coding Interval_166579 chr9 61052124 61052396 + 0 NA TTS (ENSMUSG00000111180.1) lincRNA-TTS (ENSMUSG00000111180.1) 3409 ENSMUSG00000111180.1 ENSMUSG00000111180 ENSMUST00000216861 Gm39348 lincRNA Interval_51312 chr14 26319616 26320584 + 0 NA intron (ENSMUSG00000114753.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000114753.1, intron 1 of 1) 4854 ENSMUSG00000114753.1 ENSMUSG00000114753 ENSMUST00000225697 Gm34059 lincRNA Interval_141846 chr6 134887074 134888674 + 0 NA promoter-TSS (ENSMUSG00000032641.18) protein_coding-promoter-TSS (ENSMUSG00000032641.18) -89 ENSMUSG00000032641.18 ENSMUSG00000032641 ENSMUST00000152140 Gpr19 protein_coding Interval_8446 chr1 139466147 139466372 + 0 NA intron (ENSMUSG00000033952.14, intron 7 of 26) protein_coding-intron (ENSMUSG00000033952.14, intron 7 of 27) 11487 ENSMUSG00000033952.14 ENSMUSG00000033952 ENSMUST00000196272 Aspm protein_coding Interval_106074 chr3 92578634 92578926 + 0 NA Intergenic Intergenic -5045 ENSMUSG00000049128.7 ENSMUSG00000049128 ENSMUST00000053107 Ivl protein_coding Interval_115662 chr4 101803682 101804346 + 0 NA intron (ENSMUSG00000057722.17, intron 18 of 18) protein_coding-intron (ENSMUSG00000057722.17, intron 18 of 18) 32646 ENSMUSG00000057722.17 ENSMUSG00000057722 ENSMUST00000151733 Lepr protein_coding Interval_46839 chr13 72134105 72134776 + 0 NA Intergenic Intergenic -173724 ENSMUSG00000060969.9 ENSMUSG00000060969 ENSMUST00000223460 Irx1 protein_coding Interval_88161 chr19 60103789 60104046 + 0 NA Intergenic Intergenic -9986 ENSMUSG00000118166.1 ENSMUSG00000118166 ENSMUST00000235813 Gm50296 processed_pseudogene Interval_59186 chr15 47189435 47189911 + 0 NA Intergenic Intergenic -232242 ENSMUSG00000115534.1 ENSMUSG00000115534 ENSMUST00000227510 Gm7508 processed_pseudogene Interval_13122 chr10 11801053 11802402 + 0 NA Intergenic Intergenic 37168 ENSMUSG00000112233.1 ENSMUSG00000112233 ENSMUST00000219464 Gm48698 processed_pseudogene Interval_16015 chr10 60133496 60134838 + 0 NA TTS (ENSMUSG00000058297.16) protein_coding-TTS (ENSMUSG00000058297.16) 7391 ENSMUSG00000105468.1 ENSMUSG00000105468 ENSMUST00000198998 Mir6906 miRNA Interval_45723 chr13 57281702 57282869 + 0 NA Intergenic Intergenic 5607 ENSMUSG00000114411.1 ENSMUSG00000114411 ENSMUST00000224461 Gm48176 processed_pseudogene Interval_121659 chr5 4619703 4620032 + 0 NA Intergenic Intergenic 138168 ENSMUSG00000044674.6 ENSMUSG00000044674 ENSMUST00000054294 Fzd1 protein_coding Interval_106815 chr3 101065892 101066458 + 0 NA intron (ENSMUSG00000027864.9, intron 2 of 2) protein_coding-intron (ENSMUSG00000027864.9, intron 4 of 8) 12546 ENSMUSG00000027864.9 ENSMUSG00000027864 ENSMUST00000200065 Ptgfrn protein_coding Interval_65247 chr16 20829061 20830345 + 0 NA Intergenic Intergenic -7063 ENSMUSG00000099764.1 ENSMUSG00000099764 ENSMUST00000127484 Rps10-ps2 processed_pseudogene Interval_3555 chr1 59561198 59561607 + 0 NA intron (ENSMUSG00000047361.16, intron 4 of 4) protein_coding-intron (ENSMUSG00000047361.16, intron 9 of 19) -12614 ENSMUSG00000099811.6 ENSMUSG00000099811 ENSMUST00000189864 Gm28411 antisense Interval_102162 chr3 19015474 19016383 + 0 NA Intergenic Intergenic 127971 ENSMUSG00000103135.1 ENSMUSG00000103135 ENSMUST00000193065 Gm37979 TEC Interval_96161 chr2 120161718 120162271 + 0 NA Intergenic Intergenic -24434 ENSMUSG00000027293.13 ENSMUSG00000027293 ENSMUST00000148073 Ehd4 protein_coding Interval_105320 chr3 84883065 84884501 + 0 NA intron (ENSMUSG00000028086.15, intron 3 of 12) protein_coding-intron (ENSMUSG00000028086.15, intron 1 of 12) 9892 ENSMUSG00000102919.1 ENSMUSG00000102919 ENSMUST00000193246 Gm37726 TEC Interval_157689 chr8 72310404 72311571 + 0 NA Intergenic Intergenic -5727 ENSMUSG00000070713.5 ENSMUSG00000070713 ENSMUST00000075602 Gm10282 protein_coding Interval_4868 chr1 80558138 80558472 + 0 NA intron (ENSMUSG00000038608.15, intron 27 of 56) protein_coding-intron (ENSMUSG00000038608.15, intron 27 of 55) -96857 ENSMUSG00000110100.1 ENSMUSG00000110100 ENSMUST00000211023 Gm45261 protein_coding Interval_140362 chr6 117198521 117199720 + 0 NA Intergenic Intergenic 14946 ENSMUSG00000090549.2 ENSMUSG00000090549 ENSMUST00000170447 Rpl28-ps4 processed_pseudogene Interval_74146 chr17 46796881 46797454 + 0 NA TTS (ENSMUSG00000036568.7) protein_coding-TTS (ENSMUSG00000036568.7) -14530 ENSMUSG00000063888.7 ENSMUSG00000063888 ENSMUST00000233919 Rpl7l1 protein_coding Interval_106270 chr3 95036285 95036526 + 0 NA intron (ENSMUSG00000005625.15, intron 2 of 6) protein_coding-intron (ENSMUSG00000005625.15, intron 2 of 9) -2489 ENSMUSG00000005625.15 ENSMUSG00000005625 ENSMUST00000143688 Psmd4 protein_coding Interval_92180 chr2 55441766 55442575 + 0 NA intron (ENSMUSG00000026824.11, intron 1 of 1) protein_coding-intron (ENSMUSG00000026824.11, intron 2 of 3) 5014 ENSMUSG00000026824.11 ENSMUSG00000026824 ENSMUST00000112632 Kcnj3 protein_coding Interval_95850 chr2 117256933 117257245 + 0 NA intron (ENSMUSG00000027349.5, intron 2 of 3) protein_coding-intron (ENSMUSG00000027349.5, intron 1 of 7) -1693 ENSMUSG00000027349.5 ENSMUSG00000027349 ENSMUST00000143612 Fam98b protein_coding Interval_44553 chr13 46006087 46006869 + 0 NA Intergenic Intergenic 41127 ENSMUSG00000038152.4 ENSMUSG00000038152 ENSMUST00000189843 5033430I15Rik lincRNA Interval_30706 chr11 96017661 96019061 + 0 NA Intergenic Intergenic -6184 ENSMUSG00000014351.12 ENSMUSG00000014351 ENSMUST00000103156 Gip protein_coding Interval_92607 chr2 61401666 61403756 + 0 NA Intergenic Intergenic -90055 ENSMUSG00000088340.1 ENSMUSG00000088340 ENSMUST00000157715 Gm22338 snoRNA Interval_28984 chr11 79722200 79724323 + 0 NA Intergenic Intergenic -3139 ENSMUSG00000065489.1 ENSMUSG00000065489 ENSMUST00000083555 Mir365-2 miRNA Interval_120537 chr4 149192477 149193173 + 0 NA intron (ENSMUSG00000063077.15, intron 39 of 49) protein_coding-intron (ENSMUSG00000063077.15, intron 36 of 46) -26054 ENSMUSG00000028961.15 ENSMUSG00000028961 ENSMUST00000143944 Pgd protein_coding Interval_155340 chr8 31917252 31918801 + 0 NA promoter-TSS (ENSMUSG00000062991.9) protein_coding-promoter-TSS (ENSMUSG00000062991.9) 732 ENSMUSG00000118541.1 ENSMUSG00000118541 ENSMUST00000239000 AC132407.1 protein_coding Interval_16747 chr10 67900733 67901603 + 0 NA intron (ENSMUSG00000037855.15, intron 2 of 2) protein_coding-intron (ENSMUSG00000037855.15, intron 2 of 4) 11267 ENSMUSG00000037855.15 ENSMUSG00000037855 ENSMUST00000138543 Zfp365 protein_coding Interval_101154 chr2 178587067 178587257 + 0 NA Intergenic Intergenic 126532 ENSMUSG00000039155.15 ENSMUSG00000039155 ENSMUST00000176869 Cdh26 protein_coding Interval_87304 chr19 47502484 47504068 + 0 NA intron (ENSMUSG00000042694.17, intron 2 of 2) protein_coding-intron (ENSMUSG00000042694.17, intron 9 of 9) -9706 ENSMUSG00000097990.1 ENSMUSG00000097990 ENSMUST00000182109 Gm19557 antisense Interval_151371 chr7 121896745 121896954 + 0 NA intron (ENSMUSG00000034951.10, intron 16 of 16) protein_coding-intron (ENSMUSG00000030873.9, intron 1 of 12) -2379 ENSMUSG00000030873.9 ENSMUSG00000030873 ENSMUST00000206079 Scnn1b protein_coding Interval_14894 chr10 40896862 40898220 + 0 NA intron (ENSMUSG00000019831.14, intron 1 of 8) protein_coding-intron (ENSMUSG00000019831.14, intron 1 of 8) 13714 ENSMUSG00000019831.14 ENSMUSG00000019831 ENSMUST00000105509 Wasf1 protein_coding Interval_31270 chr11 99247319 99249327 + 0 NA Intergenic Intergenic -9448 ENSMUSG00000035849.14 ENSMUSG00000035849 ENSMUST00000154622 Krt222 protein_coding Interval_40108 chr12 101351987 101352437 + 0 NA intron (ENSMUSG00000113134.2, intron 14 of 21) transcribed_unprocessed_pseudogene-intron (ENSMUSG00000113134.2, intron 2 of 9) -52441 ENSMUSG00000047014.7 ENSMUSG00000047014 ENSMUST00000220820 Catsperb protein_coding Interval_95115 chr2 104000872 104001902 + 0 NA intron (ENSMUSG00000046085.7, intron 3 of 4) protein_coding-intron (ENSMUSG00000046085.7, intron 3 of 4) -26461 ENSMUSG00000027180.12 ENSMUSG00000027180 ENSMUST00000102565 Fbxo3 protein_coding Interval_120323 chr4 147874031 147874286 + 0 NA exon (ENSMUSG00000029020.13, exon 20 of 20) protein_coding-exon (ENSMUSG00000029020.13, exon 20 of 20) 5179 ENSMUSG00000070583.1 ENSMUSG00000070583 ENSMUST00000094481 Fv1 protein_coding Interval_172814 chrX 50576885 50577524 + 0 NA intron (ENSMUSG00000085396.7, intron 5 of 11) processed_transcript-intron (ENSMUSG00000085396.7, intron 4 of 6) -12321 ENSMUSG00000085396.7 ENSMUSG00000085396 ENSMUST00000148530 Firre processed_transcript Interval_77404 chr17 88491906 88492897 + 0 NA Intergenic Intergenic -40626 ENSMUSG00000103075.1 ENSMUSG00000103075 ENSMUST00000195386 Gm38109 TEC Interval_136800 chr6 60501372 60501833 + 0 NA Intergenic Intergenic 11646 ENSMUSG00000108192.1 ENSMUSG00000108192 ENSMUST00000203151 Gm44410 lincRNA Interval_168375 chr9 79792700 79793863 + 0 NA promoter-TSS (ENSMUSG00000086918.1) lincRNA-promoter-TSS (ENSMUSG00000086918.1) 149 ENSMUSG00000032328.12 ENSMUSG00000032328 ENSMUST00000130419 Tmem30a protein_coding Interval_61441 chr15 81648057 81648610 + 0 NA intron (ENSMUSG00000055024.12, intron 1 of 2) protein_coding-intron (ENSMUSG00000055024.12, intron 29 of 30) 8066 ENSMUSG00000116516.1 ENSMUSG00000116516 ENSMUST00000230244 Gm49444 processed_pseudogene Interval_142287 chr6 140461756 140462375 + 0 NA intron (ENSMUSG00000030231.11, intron 1 of 9) protein_coding-intron (ENSMUSG00000030231.11, intron 3 of 30) 41894 ENSMUSG00000107891.1 ENSMUSG00000107891 ENSMUST00000204085 Gm5051 processed_pseudogene Interval_163086 chr9 15155832 15156143 + 0 NA Intergenic Intergenic -43879 ENSMUSG00000031936.9 ENSMUSG00000031936 ENSMUST00000159985 Hephl1 protein_coding Interval_86045 chr19 35978750 35978997 + 0 NA intron (ENSMUSG00000024798.15, intron 1 of 3) protein_coding-intron (ENSMUSG00000024798.15, intron 1 of 3) -54304 ENSMUSG00000094707.2 ENSMUSG00000094707 ENSMUST00000238067 A830019P07Rik lincRNA Interval_84417 chr19 10748861 10749142 + 0 NA intron (ENSMUSG00000067577.8, intron 1 of 1) processed_transcript-intron (ENSMUSG00000067577.8, intron 1 of 3) -9999 ENSMUSG00000024669.8 ENSMUSG00000024669 ENSMUST00000237397 Cd5 protein_coding Interval_150177 chr7 107618004 107619541 + 0 NA intron (ENSMUSG00000036528.16, intron 1 of 25) protein_coding-intron (ENSMUSG00000036528.16, intron 1 of 24) 6389 ENSMUSG00000049740.2 ENSMUSG00000049740 ENSMUST00000060348 5330417H12Rik TEC Interval_1930 chr1 34635121 34636105 + 0 NA TTS (ENSMUSG00000104098.1) processed_pseudogene-TTS (ENSMUSG00000104098.1) 576 ENSMUSG00000104098.1 ENSMUSG00000104098 ENSMUST00000195095 AA619741 processed_pseudogene Interval_56912 chr14 123169778 123170283 + 0 NA intron (ENSMUSG00000115016.1, intron 2 of 3) processed_transcript-intron (ENSMUSG00000115016.1, intron 2 of 4) -4545 ENSMUSG00000115758.1 ENSMUSG00000115758 ENSMUST00000226283 Gm49294 processed_pseudogene Interval_85287 chr19 24402551 24402798 + 0 NA intron (ENSMUSG00000024867.14, intron 3 of 3) protein_coding-intron (ENSMUSG00000024867.14, intron 3 of 14) -13335 ENSMUSG00000085003.1 ENSMUSG00000085003 ENSMUST00000126936 Pip5k1bos antisense Interval_169327 chr9 96437199 96438839 + 0 NA promoter-TSS (ENSMUSG00000056418.3) lincRNA-promoter-TSS (ENSMUSG00000056418.3) 119 ENSMUSG00000056418.3 ENSMUSG00000056418 ENSMUST00000070500 BC043934 lincRNA Interval_14354 chr10 31429123 31430172 + 0 NA promoter-TSS (ENSMUSG00000110976.1) antisense-promoter-TSS (ENSMUSG00000110976.1) -346 ENSMUSG00000110976.1 ENSMUSG00000110976 ENSMUST00000215166 Gm48093 antisense Interval_8522 chr1 140572259 140572585 + 0 NA intron (ENSMUSG00000102368.1, intron 3 of 3) protein_coding-intron (ENSMUSG00000052726.16, intron 21 of 26) 83982 ENSMUSG00000102368.1 ENSMUSG00000102368 ENSMUST00000193820 4930590L20Rik antisense Interval_166446 chr9 59558695 59559131 + 0 NA intron (ENSMUSG00000025232.8, intron 6 of 13) protein_coding-intron (ENSMUSG00000025232.8, intron 6 of 13) 19373 ENSMUSG00000025232.8 ENSMUSG00000025232 ENSMUST00000026262 Hexa protein_coding Interval_173156 chrX 73653917 73654706 + 0 NA Intergenic Intergenic 5122 ENSMUSG00000002012.13 ENSMUSG00000002012 ENSMUST00000144187 Pnck protein_coding Interval_84026 chr19 6814694 6815529 + 0 NA Intergenic Intergenic 14627 ENSMUSG00000118181.1 ENSMUSG00000118181 ENSMUST00000235920 CAAA01066123.1 processed_transcript Interval_79727 chr18 34758616 34760138 + 0 NA promoter-TSS (ENSMUSG00000034300.17) protein_coding-promoter-TSS (ENSMUSG00000034300.17) -196 ENSMUSG00000034300.17 ENSMUSG00000034300 ENSMUST00000235929 Fam53c protein_coding Interval_29325 chr11 82951797 82952371 + 0 NA promoter-TSS (ENSMUSG00000054404.13) protein_coding-promoter-TSS (ENSMUSG00000054404.13) 735 ENSMUSG00000054404.13 ENSMUSG00000054404 ENSMUST00000108157 Slfn5 protein_coding Interval_88549 chr2 6054207 6055720 + 0 NA intron (ENSMUSG00000043241.14, intron 3 of 3) protein_coding-intron (ENSMUSG00000043241.14, intron 21 of 21) 4536 ENSMUSG00000043241.14 ENSMUSG00000043241 ENSMUST00000144901 Upf2 protein_coding Interval_79473 chr18 32152860 32153945 + 0 NA promoter-TSS (ENSMUSG00000097363.1) lincRNA-promoter-TSS (ENSMUSG00000097363.1) -74 ENSMUSG00000097363.1 ENSMUSG00000097363 ENSMUST00000181713 Gm26717 lincRNA Interval_162864 chr9 10605507 10606127 + 0 NA intron (ENSMUSG00000039488.15, intron 2 of 20) protein_coding-intron (ENSMUSG00000039488.15, intron 2 of 24) -128823 ENSMUSG00000111209.1 ENSMUSG00000111209 ENSMUST00000213753 Gm7529 processed_pseudogene Interval_23322 chr11 21352680 21352993 + 0 NA intron (ENSMUSG00000001891.16, intron 3 of 9) protein_coding-intron (ENSMUSG00000001891.16, intron 3 of 9) -8161 ENSMUSG00000089555.1 ENSMUSG00000089555 ENSMUST00000158930 Mir1933 miRNA Interval_45816 chr13 58280294 58281353 + 0 NA promoter-TSS (ENSMUSG00000097399.7) antisense-promoter-TSS (ENSMUSG00000097399.7) -368 ENSMUSG00000097399.7 ENSMUSG00000097399 ENSMUST00000190479 Gm26555 antisense Interval_143474 chr7 7130505 7131055 + 0 NA exon (ENSMUSG00000063535.7, exon 4 of 4) protein_coding-exon (ENSMUSG00000063535.7, exon 4 of 4) 5944 ENSMUSG00000063535.7 ENSMUSG00000063535 ENSMUST00000032622 Zfp773 protein_coding Interval_36146 chr12 36342081 36344678 + 0 NA Intergenic Intergenic 17038 ENSMUSG00000114141.1 ENSMUSG00000114141 ENSMUST00000221599 Gm34215 lincRNA Interval_75572 chr17 68246819 68247434 + 0 NA Intergenic Intergenic -59390 ENSMUSG00000117193.1 ENSMUSG00000117193 ENSMUST00000233387 Gm36252 lincRNA Interval_76079 chr17 74754640 74755362 + 0 NA intron (ENSMUSG00000024078.7, intron 4 of 5) protein_coding-intron (ENSMUSG00000024078.7, intron 9 of 19) -15065 ENSMUSG00000024078.7 ENSMUSG00000024078 ENSMUST00000234264 Ttc27 protein_coding Interval_2908 chr1 49353302 49354132 + 0 NA Intergenic Intergenic 47012 ENSMUSG00000099627.1 ENSMUSG00000099627 ENSMUST00000189810 Gm6757 processed_pseudogene Interval_355 chr1 4491737 4493854 + 0 NA exon (ENSMUSG00000025902.13, exon 1 of 1) protein_coding-exon (ENSMUSG00000025902.13, exon 1 of 1) 3962 ENSMUSG00000025902.13 ENSMUSG00000025902 ENSMUST00000192913 Sox17 protein_coding Interval_174161 chrX 136976390 136977351 + 0 NA promoter-TSS (ENSMUSG00000089768.2) protein_coding-promoter-TSS (ENSMUSG00000089768.2) -1 ENSMUSG00000072955.14 ENSMUSG00000072955 ENSMUST00000127404 Tmsb15l protein_coding Interval_134744 chr6 31148036 31148773 + 0 NA promoter-TSS (ENSMUSG00000103220.1) TEC-promoter-TSS (ENSMUSG00000103220.1) -985 ENSMUSG00000103220.1 ENSMUSG00000103220 ENSMUST00000195025 Gm37728 TEC Interval_145391 chr7 34407604 34408819 + 0 NA Intergenic Intergenic 18479 ENSMUSG00000108732.1 ENSMUSG00000108732 ENSMUST00000205403 2310043P16Rik TEC Interval_95926 chr2 118485028 118486151 + 0 NA Intergenic Intergenic -1412 ENSMUSG00000084028.1 ENSMUSG00000084028 ENSMUST00000118018 Gm13983 processed_pseudogene Interval_115605 chr4 101347328 101347713 + 0 NA promoter-TSS (ENSMUSG00000065451.1) miRNA-promoter-TSS (ENSMUSG00000065451.1) -493 ENSMUSG00000065451.1 ENSMUSG00000065451 ENSMUST00000083517 Mir101a miRNA Interval_137256 chr6 70797763 70798560 + 0 NA Intergenic Intergenic -6158 ENSMUSG00000053604.5 ENSMUSG00000053604 ENSMUST00000129244 Rpia protein_coding Interval_88158 chr19 60054654 60055957 + 0 NA Intergenic Intergenic -24127 ENSMUSG00000118291.1 ENSMUSG00000118291 ENSMUST00000237917 Csf1r-ps processed_pseudogene Interval_111283 chr4 17107412 17108270 + 0 NA Intergenic Intergenic -61789 ENSMUSG00000082552.1 ENSMUSG00000082552 ENSMUST00000119679 Gm11850 processed_pseudogene Interval_84999 chr19 21138745 21139411 + 0 NA intron (ENSMUSG00000118086.1, intron 2 of 4) lincRNA-intron (ENSMUSG00000118086.1, intron 2 of 4) 31763 ENSMUSG00000118086.1 ENSMUSG00000118086 ENSMUST00000235897 AC106834.1 lincRNA Interval_76914 chr17 84956777 84958628 + 0 NA promoter-TSS (ENSMUSG00000061130.13) protein_coding-promoter-TSS (ENSMUSG00000061130.13) -463 ENSMUSG00000097047.2 ENSMUSG00000097047 ENSMUST00000181147 1110020A21Rik bidirectional_promoter_lncRNA Interval_156551 chr8 50917751 50917979 + 0 NA promoter-TSS (ENSMUSG00000110246.1) lincRNA-promoter-TSS (ENSMUSG00000110246.1) -868 ENSMUSG00000110246.1 ENSMUSG00000110246 ENSMUST00000211313 C130073E24Rik lincRNA Interval_149504 chr7 99196762 99197146 + 0 NA Intergenic Intergenic -5412 ENSMUSG00000109052.1 ENSMUSG00000109052 ENSMUST00000208323 Gm45012 antisense Interval_166010 chr9 55424061 55424831 + 0 NA intron (ENSMUSG00000032313.11, intron 9 of 10) protein_coding-intron (ENSMUSG00000032313.11, intron 8 of 10) 87674 ENSMUSG00000032314.14 ENSMUSG00000032314 ENSMUST00000142587 Etfa protein_coding Interval_113502 chr4 55385779 55386102 + 0 NA intron (ENSMUSG00000028426.10, intron 9 of 9) protein_coding-intron (ENSMUSG00000028426.10, intron 9 of 9) 6761 ENSMUSG00000084144.1 ENSMUSG00000084144 ENSMUST00000120819 Gm12516 processed_pseudogene Interval_134516 chr6 29288753 29289156 + 0 NA intron (ENSMUSG00000079652.8, intron 3 of 3) protein_coding-intron (ENSMUSG00000079652.8, intron 4 of 4) 7811 ENSMUSG00000079652.8 ENSMUSG00000079652 ENSMUST00000167608 Fam71f2 protein_coding Interval_30677 chr11 95830264 95831924 + 0 NA TTS (ENSMUSG00000018381.15) protein_coding-TTS (ENSMUSG00000018381.15) 331 ENSMUSG00000050860.6 ENSMUSG00000050860 ENSMUST00000176538 Phospho1 protein_coding Interval_55643 chr14 97543156 97546605 + 0 NA Intergenic Intergenic 121411 ENSMUSG00000115598.1 ENSMUSG00000115598 ENSMUST00000227015 Gm9290 processed_pseudogene Interval_26033 chr11 53590046 53591034 + 0 NA intron (ENSMUSG00000018395.19, intron 10 of 18) protein_coding-intron (ENSMUSG00000018395.19, intron 9 of 16) 23143 ENSMUSG00000018395.19 ENSMUSG00000018395 ENSMUST00000130037 Kif3a protein_coding Interval_131000 chr5 134489486 134490501 + 0 NA exon (ENSMUSG00000063146.11, exon 16 of 16) protein_coding-exon (ENSMUSG00000063146.11, exon 16 of 16) -4547 ENSMUSG00000106802.1 ENSMUSG00000106802 ENSMUST00000200763 Gm42885 TEC Interval_679 chr1 9825372 9825891 + 0 NA intron (ENSMUSG00000025915.14, intron 1 of 16) protein_coding-intron (ENSMUSG00000025915.14, intron 1 of 16) 8971 ENSMUSG00000088916.1 ENSMUSG00000088916 ENSMUST00000158291 Gm22607 snRNA Interval_157856 chr8 75005101 75005716 + 0 NA intron (ENSMUSG00000034518.14, intron 6 of 11) protein_coding-intron (ENSMUSG00000034518.14, intron 5 of 10) 5539 ENSMUSG00000034518.14 ENSMUSG00000034518 ENSMUST00000129391 Hmgxb4 protein_coding Interval_70487 chr17 10630446 10630990 + 0 NA intron (ENSMUSG00000037196.6, intron 2 of 4) protein_coding-intron (ENSMUSG00000037196.6, intron 2 of 4) 349 ENSMUSG00000037196.6 ENSMUSG00000037196 ENSMUST00000160599 Pacrg protein_coding Interval_78064 chr18 7616731 7617643 + 0 NA intron (ENSMUSG00000057440.8, intron 1 of 2) protein_coding-intron (ENSMUSG00000057440.8, intron 1 of 16) 9667 ENSMUSG00000057440.8 ENSMUSG00000057440 ENSMUST00000233992 Mpp7 protein_coding Interval_8730 chr1 150164931 150165725 + 0 NA promoter-TSS (ENSMUSG00000097754.1) lincRNA-promoter-TSS (ENSMUSG00000097754.1) -380 ENSMUSG00000097754.1 ENSMUSG00000097754 ENSMUST00000181308 Ptgs2os2 lincRNA Interval_160460 chr8 109678574 109679277 + 0 NA exon (ENSMUSG00000031729.6, exon 6 of 10) protein_coding-exon (ENSMUSG00000031729.6, exon 6 of 10) 14335 ENSMUSG00000031729.6 ENSMUSG00000031729 ENSMUST00000212170 Ist1 protein_coding Interval_32566 chr11 108656038 108656292 + 0 NA intron (ENSMUSG00000020728.17, intron 1 of 5) protein_coding-intron (ENSMUSG00000020728.17, intron 21 of 27) 31870 ENSMUSG00000081016.1 ENSMUSG00000081016 ENSMUST00000121388 Olfr1397-ps1 unprocessed_pseudogene Interval_139802 chr6 108827931 108829308 + 0 NA promoter-TSS (ENSMUSG00000030104.9) protein_coding-promoter-TSS (ENSMUSG00000030104.9) -22 ENSMUSG00000030104.9 ENSMUSG00000030104 ENSMUST00000203302 Edem1 protein_coding Interval_34975 chr12 16026690 16027064 + 0 NA Intergenic Intergenic -11332 ENSMUSG00000113930.1 ENSMUSG00000113930 ENSMUST00000223158 Gm36235 lincRNA Interval_59166 chr15 45762381 45762654 + 0 NA Intergenic Intergenic -200009 ENSMUSG00000115549.1 ENSMUSG00000115549 ENSMUST00000228018 Gm2203 processed_pseudogene Interval_18351 chr10 85139545 85139803 + 0 NA intron (ENSMUSG00000020038.10, intron 10 of 12) protein_coding-intron (ENSMUSG00000020038.10, intron 10 of 12) -11647 ENSMUSG00000049038.3 ENSMUSG00000049038 ENSMUST00000214193 Mterf2 protein_coding Interval_84867 chr19 18333757 18334016 + 0 NA Intergenic Intergenic -128091 ENSMUSG00000117774.1 ENSMUSG00000117774 ENSMUST00000237977 Gm18610 processed_pseudogene Interval_89480 chr2 20928983 20929245 + 0 NA intron (ENSMUSG00000085206.1, intron 1 of 1) protein_coding-intron (ENSMUSG00000036591.16, intron 2 of 25) 2275 ENSMUSG00000085206.1 ENSMUSG00000085206 ENSMUST00000124322 Gm13380 sense_intronic Interval_111529 chr4 22494748 22495163 + 0 NA Intergenic Intergenic 4407 ENSMUSG00000107859.1 ENSMUSG00000107859 ENSMUST00000203909 Gm30731 lincRNA Interval_75090 chr17 63207633 63209368 + 0 NA intron (ENSMUSG00000023965.13, intron 4 of 5) protein_coding-intron (ENSMUSG00000023965.13, intron 7 of 8) 5762 ENSMUSG00000088853.1 ENSMUSG00000088853 ENSMUST00000158228 Gm24730 snoRNA Interval_169248 chr9 95813447 95813731 + 0 NA intron (ENSMUSG00000049493.13, intron 1 of 15) protein_coding-intron (ENSMUSG00000049493.13, intron 1 of 15) 31722 ENSMUSG00000049493.13 ENSMUSG00000049493 ENSMUST00000135816 Pls1 protein_coding Interval_166275 chr9 57967655 57969956 + 0 NA Intergenic Intergenic 28693 ENSMUSG00000038264.8 ENSMUSG00000038264 ENSMUST00000043059 Sema7a protein_coding Interval_138441 chr6 88226245 88227078 + 0 NA promoter-TSS (ENSMUSG00000047046.8) antisense-promoter-TSS (ENSMUSG00000047046.8) -3022 ENSMUSG00000047046.8 ENSMUSG00000047046 ENSMUST00000156018 1700031F10Rik antisense Interval_60159 chr15 66697950 66698157 + 0 NA intron (ENSMUSG00000053469.14, intron 19 of 47) protein_coding-intron (ENSMUSG00000053469.14, intron 19 of 47) -38197 ENSMUSG00000053469.14 ENSMUSG00000053469 ENSMUST00000166403 Tg protein_coding Interval_15617 chr10 52330668 52331261 + 0 NA Intergenic Intergenic 12693 ENSMUSG00000112550.1 ENSMUSG00000112550 ENSMUST00000218299 Gm6627 processed_pseudogene Interval_33047 chr11 113865701 113866232 + 0 NA exon (ENSMUSG00000041592.16, exon 12 of 12) protein_coding-exon (ENSMUSG00000041592.16, exon 12 of 12) -55543 ENSMUSG00000041592.16 ENSMUSG00000041592 ENSMUST00000144301 Sdk2 protein_coding Interval_134157 chr6 22071386 22072288 + 0 NA intron (ENSMUSG00000062980.15, intron 3 of 3) protein_coding-intron (ENSMUSG00000062980.15, intron 4 of 9) 45894 ENSMUSG00000062980.15 ENSMUSG00000062980 ENSMUST00000154734 Cped1 protein_coding Interval_43449 chr13 31125305 31125909 + 0 NA Intergenic Intergenic -47762 ENSMUSG00000114161.1 ENSMUSG00000114161 ENSMUST00000220673 Gm48662 lincRNA Interval_109902 chr3 150479227 150479414 + 0 NA Intergenic Intergenic 36761 ENSMUSG00000105779.1 ENSMUSG00000105779 ENSMUST00000199849 Gm6439 processed_pseudogene Interval_108718 chr3 130697530 130697950 + 0 NA intron (ENSMUSG00000041084.8, intron 3 of 3) protein_coding-intron (ENSMUSG00000041084.8, intron 3 of 3) 8209 ENSMUSG00000105466.1 ENSMUSG00000105466 ENSMUST00000197053 Gm42998 TEC Interval_70729 chr17 13930633 13931246 + 0 NA intron (ENSMUSG00000115221.1, intron 7 of 10) unitary_pseudogene-intron (ENSMUSG00000115221.1, intron 7 of 10) -17434 ENSMUSG00000067941.5 ENSMUSG00000067941 ENSMUST00000088809 Gm7168 protein_coding Interval_161963 chr8 124087826 124088791 + 0 NA intron (ENSMUSG00000092329.1, intron 1 of 15) protein_coding-intron (ENSMUSG00000092329.1, intron 1 of 15) -39896 ENSMUSG00000110704.1 ENSMUSG00000110704 ENSMUST00000212460 Gm45732 antisense Interval_54387 chr14 68148805 68149127 + 0 NA Intergenic Intergenic 18108 ENSMUSG00000087772.1 ENSMUSG00000087772 ENSMUST00000157147 Gm22319 snoRNA Interval_163234 chr9 18907553 18908685 + 0 NA Intergenic Intergenic 24862 ENSMUSG00000066914.4 ENSMUSG00000066914 ENSMUST00000086496 Olfr831-ps1 unprocessed_pseudogene Interval_96147 chr2 120049795 120050497 + 0 NA exon (ENSMUSG00000074899.6, exon 53 of 66) protein_coding-exon (ENSMUSG00000074899.6, exon 53 of 66) 11279 ENSMUSG00000098488.7 ENSMUSG00000098488 ENSMUST00000130018 Pla2g4b protein_coding Interval_52611 chr14 47908872 47909455 + 0 NA intron (ENSMUSG00000115609.1, intron 2 of 3) lincRNA-intron (ENSMUSG00000115609.1, intron 3 of 3) 10312 ENSMUSG00000115609.1 ENSMUSG00000115609 ENSMUST00000226469 4930447J18Rik lincRNA Interval_38654 chr12 80843512 80844469 + 0 NA intron (ENSMUSG00000021133.9, intron 2 of 5) protein_coding-intron (ENSMUSG00000021133.9, intron 2 of 5) 53480 ENSMUSG00000021133.9 ENSMUSG00000021133 ENSMUST00000219720 Susd6 protein_coding Interval_70482 chr17 10566891 10569010 + 0 NA intron (ENSMUSG00000089941.1, intron 1 of 1) protein_coding-intron (ENSMUSG00000037196.6, intron 4 of 4) 63117 ENSMUSG00000037196.6 ENSMUSG00000037196 ENSMUST00000160599 Pacrg protein_coding Interval_74095 chr17 46555049 46556738 + 0 NA exon (ENSMUSG00000015605.6, exon 1 of 7) protein_coding-exon (ENSMUSG00000015605.6, exon 1 of 7) -2004 ENSMUSG00000106514.1 ENSMUSG00000106514 ENSMUST00000199897 Mir6976 miRNA Interval_146857 chr7 53542898 53543154 + 0 NA Intergenic Intergenic 348863 ENSMUSG00000099176.1 ENSMUSG00000099176 ENSMUST00000184140 Mir6238 miRNA Interval_16711 chr10 67142709 67143557 + 0 NA intron (ENSMUSG00000037876.17, intron 1 of 25) protein_coding-intron (ENSMUSG00000037876.17, intron 1 of 25) -42615 ENSMUSG00000037876.17 ENSMUSG00000037876 ENSMUST00000173236 Jmjd1c protein_coding Interval_33136 chr11 114672782 114676345 + 0 NA promoter-TSS (ENSMUSG00000034714.9) protein_coding-promoter-TSS (ENSMUSG00000034714.9) -953 ENSMUSG00000034714.9 ENSMUSG00000034714 ENSMUST00000141111 Ttyh2 protein_coding Interval_166803 chr9 62801235 62801481 + 0 NA intron (ENSMUSG00000032244.9, intron 1 of 1) protein_coding-intron (ENSMUSG00000032244.9, intron 1 of 1) 10576 ENSMUSG00000032244.9 ENSMUSG00000032244 ENSMUST00000034775 Fem1b protein_coding Interval_2723 chr1 43913276 43913471 + 0 NA Intergenic Intergenic 5513 ENSMUSG00000095757.1 ENSMUSG00000095757 ENSMUST00000179961 Gm24180 miRNA Interval_29640 chr11 85748808 85749142 + 0 NA intron (ENSMUSG00000059439.15, intron 1 of 4) protein_coding-intron (ENSMUSG00000059439.15, intron 23 of 24) 11727 ENSMUSG00000093278.1 ENSMUSG00000093278 ENSMUST00000175537 Mir5110 miRNA Interval_80899 chr18 50006234 50006916 + 0 NA intron (ENSMUSG00000062210.13, intron 1 of 3) protein_coding-intron (ENSMUSG00000062210.13, intron 1 of 1) -40165 ENSMUSG00000062210.13 ENSMUSG00000062210 ENSMUST00000148159 Tnfaip8 protein_coding Interval_133697 chr6 8831188 8831825 + 0 NA Intergenic Intergenic -73107 ENSMUSG00000062995.12 ENSMUSG00000062995 ENSMUST00000151758 Ica1 protein_coding Interval_120139 chr4 142936227 142936453 + 0 NA intron (ENSMUSG00000110067.2, intron 1 of 1) protein_coding-intron (ENSMUSG00000110067.2, intron 1 of 2) 137426 ENSMUSG00000110067.2 ENSMUSG00000110067 ENSMUST00000238915 6330411D24Rik protein_coding Interval_155940 chr8 41156040 41156359 + 0 NA Intergenic Intergenic 58954 ENSMUSG00000031594.9 ENSMUSG00000031594 ENSMUST00000134510 Fgl1 protein_coding Interval_54978 chr14 76630055 76630749 + 0 NA Intergenic Intergenic 6462 ENSMUSG00000115143.1 ENSMUSG00000115143 ENSMUST00000227724 Fkbp1a-ps1 processed_pseudogene Interval_22131 chr11 6519255 6520066 + 0 NA promoter-TSS (ENSMUSG00000020437.12) protein_coding-promoter-TSS (ENSMUSG00000020437.12) 1298 ENSMUSG00000020437.12 ENSMUSG00000020437 ENSMUST00000134489 Myo1g protein_coding Interval_162195 chr8 125844628 125845540 + 0 NA intron (ENSMUSG00000060212.13, intron 15 of 16) protein_coding-intron (ENSMUSG00000060212.13, intron 15 of 33) -16051 ENSMUSG00000060212.13 ENSMUSG00000060212 ENSMUST00000187772 Pcnx2 protein_coding Interval_152104 chr7 129406945 129407170 + 0 NA Intergenic Intergenic -3967 ENSMUSG00000108713.1 ENSMUSG00000108713 ENSMUST00000206093 Gm33027 lincRNA Interval_84927 chr19 18842268 18842561 + 0 NA intron (ENSMUSG00000024727.9, intron 1 of 4) protein_coding-intron (ENSMUSG00000024727.9, intron 25 of 38) -65453 ENSMUSG00000088601.1 ENSMUSG00000088601 ENSMUST00000157976 Gm24190 misc_RNA Interval_34820 chr12 12236953 12237362 + 0 NA Intergenic Intergenic -25026 ENSMUSG00000020589.17 ENSMUSG00000020589 ENSMUST00000222357 Fam49a protein_coding Interval_40128 chr12 101816787 101817222 + 0 NA intron (ENSMUSG00000021186.9, intron 1 of 6) protein_coding-intron (ENSMUSG00000021186.9, intron 1 of 10) 1464 ENSMUSG00000021186.9 ENSMUSG00000021186 ENSMUST00000221373 Fbln5 protein_coding Interval_60085 chr15 64920557 64923180 + 0 NA exon (ENSMUSG00000022376.8, exon 1 of 18) protein_coding-exon (ENSMUSG00000022376.8, exon 1 of 18) 403 ENSMUSG00000022376.8 ENSMUSG00000022376 ENSMUST00000228109 Adcy8 protein_coding Interval_22947 chr11 17871805 17871976 + 0 NA Intergenic Intergenic 81985 ENSMUSG00000016984.7 ENSMUSG00000016984 ENSMUST00000076661 Etaa1 protein_coding Interval_128062 chr5 110598678 110599611 + 0 NA intron (ENSMUSG00000033316.14, intron 5 of 10) protein_coding-intron (ENSMUSG00000033316.14, intron 5 of 10) -4377 ENSMUSG00000033316.14 ENSMUSG00000033316 ENSMUST00000165856 Galnt9 protein_coding Interval_67595 chr16 51872775 51873290 + 0 NA Intergenic Intergenic 114255 ENSMUSG00000116725.1 ENSMUSG00000116725 ENSMUST00000232050 Gm29686 processed_transcript Interval_10925 chr1 177087376 177087640 + 0 NA intron (ENSMUSG00000019699.16, intron 5 of 12) protein_coding-intron (ENSMUSG00000019699.16, intron 5 of 12) -11724 ENSMUSG00000102749.1 ENSMUSG00000102749 ENSMUST00000194506 Gm37598 TEC Interval_61746 chr15 83765574 83765868 + 0 NA Intergenic Intergenic -26293 ENSMUSG00000041708.12 ENSMUSG00000041708 ENSMUST00000148868 Mpped1 protein_coding Interval_51073 chr14 21995150 21995940 + 0 NA exon (ENSMUSG00000103160.1, exon 1 of 1) TEC-exon (ENSMUSG00000103160.1, exon 1 of 1) 3109 ENSMUSG00000103160.1 ENSMUSG00000103160 ENSMUST00000194287 C130012C08Rik TEC Interval_65395 chr16 22113922 22114237 + 0 NA intron (ENSMUSG00000033581.17, intron 1 of 4) protein_coding-intron (ENSMUSG00000033581.17, intron 2 of 15) 7157 ENSMUSG00000033581.17 ENSMUSG00000033581 ENSMUST00000127696 Igf2bp2 protein_coding Interval_150884 chr7 116172840 116173699 + 0 NA intron (ENSMUSG00000045659.18, intron 6 of 24) protein_coding-intron (ENSMUSG00000045659.18, intron 6 of 24) -43744 ENSMUSG00000045659.18 ENSMUSG00000045659 ENSMUST00000205446 Plekha7 protein_coding Interval_91000 chr2 34090134 34091175 + 0 NA intron (ENSMUSG00000087461.2, intron 1 of 3) lincRNA-intron (ENSMUSG00000087461.2, intron 1 of 3) 17081 ENSMUSG00000087461.2 ENSMUSG00000087461 ENSMUST00000149707 C230014O12Rik lincRNA Interval_31221 chr11 98981292 98983018 + 0 NA TTS (ENSMUSG00000047197.1) protein_coding-TTS (ENSMUSG00000047197.1) 861 ENSMUSG00000047197.1 ENSMUSG00000047197 ENSMUST00000062931 Gjd3 protein_coding Interval_12529 chr1 194885966 194886321 + 0 NA Intergenic Intergenic 27486 ENSMUSG00000084631.1 ENSMUSG00000084631 ENSMUST00000122682 Gm23885 misc_RNA Interval_119753 chr4 139683622 139684890 + 0 NA Intergenic Intergenic 30707 ENSMUSG00000028738.14 ENSMUSG00000028738 ENSMUST00000166773 Tas1r2 protein_coding Interval_77038 chr17 85877395 85877661 + 0 NA intron (ENSMUSG00000117501.1, intron 2 of 2) lincRNA-intron (ENSMUSG00000117501.1, intron 2 of 2) 51051 ENSMUSG00000117501.1 ENSMUSG00000117501 ENSMUST00000234707 Gm30117 lincRNA Interval_104000 chr3 56875674 56875939 + 0 NA Intergenic Intergenic -47019 ENSMUSG00000105113.1 ENSMUSG00000105113 ENSMUST00000200018 Gm2622 processed_pseudogene Interval_134580 chr6 29735169 29736738 + 0 NA exon (ENSMUSG00000001761.7, exon 1 of 12) protein_coding-exon (ENSMUSG00000001761.7, exon 1 of 12) 450 ENSMUSG00000001761.7 ENSMUSG00000001761 ENSMUST00000001812 Smo protein_coding Interval_18419 chr10 85651403 85652223 + 0 NA intron (ENSMUSG00000020042.15, intron 3 of 4) protein_coding-intron (ENSMUSG00000020042.15, intron 13 of 14) 6610 ENSMUSG00000020042.15 ENSMUSG00000020042 ENSMUST00000145433 Btbd11 protein_coding Interval_12219 chr1 190919866 190920192 + 0 NA Intergenic Intergenic -17223 ENSMUSG00000026634.16 ENSMUSG00000026634 ENSMUST00000146048 Angel2 protein_coding Interval_130163 chr5 124628492 124629609 + 0 NA promoter-TSS (ENSMUSG00000038023.12) protein_coding-promoter-TSS (ENSMUSG00000038023.12) 474 ENSMUSG00000038023.12 ENSMUSG00000038023 ENSMUST00000197161 Atp6v0a2 protein_coding Interval_62313 chr15 89840912 89842108 + 0 NA intron (ENSMUSG00000063260.2, intron 1 of 6) protein_coding-intron (ENSMUSG00000063260.2, intron 1 of 6) 350 ENSMUSG00000063260.2 ENSMUSG00000063260 ENSMUST00000029441 Syt10 protein_coding Interval_165832 chr9 53636627 53637178 + 0 NA intron (ENSMUSG00000032030.16, intron 6 of 17) protein_coding-intron (ENSMUSG00000032030.16, intron 7 of 18) -3075 ENSMUSG00000064622.1 ENSMUSG00000064622 ENSMUST00000082688 Gm22304 snoRNA Interval_97916 chr2 145674742 145676241 + 0 NA exon (ENSMUSG00000001768.16, exon 1 of 2) protein_coding-exon (ENSMUSG00000001768.16, exon 1 of 2) 276 ENSMUSG00000001768.16 ENSMUSG00000001768 ENSMUST00000145874 Rin2 protein_coding Interval_164118 chr9 31632819 31633159 + 0 NA Intergenic Intergenic -10781 ENSMUSG00000111153.1 ENSMUSG00000111153 ENSMUST00000217424 Gm18820 processed_pseudogene Interval_129652 chr5 121540009 121540405 + 0 NA intron (ENSMUSG00000072647.6, intron 2 of 14) protein_coding-intron (ENSMUSG00000029454.15, intron 2 of 13) 5024 ENSMUSG00000029454.15 ENSMUSG00000029454 ENSMUST00000131914 Mapkapk5 protein_coding Interval_76777 chr17 83972246 83974250 + 0 NA Intergenic Intergenic -12318 ENSMUSG00000117564.1 ENSMUSG00000117564 ENSMUST00000234390 Gm41638 lincRNA Interval_80261 chr18 38592030 38593104 + 0 NA intron (ENSMUSG00000024427.7, intron 1 of 1) protein_coding-intron (ENSMUSG00000024427.7, intron 1 of 1) -1591 ENSMUSG00000099111.1 ENSMUSG00000099111 ENSMUST00000185182 Gm27369 misc_RNA Interval_60925 chr15 77881721 77883775 + 0 NA Intergenic Intergenic -41992 ENSMUSG00000084497.1 ENSMUSG00000084497 ENSMUST00000122548 Gm22107 snRNA Interval_131445 chr5 137277467 137278158 + 0 NA intron (ENSMUSG00000105736.1, intron 3 of 3) lincRNA-intron (ENSMUSG00000105736.1, intron 3 of 3) -10471 ENSMUSG00000023328.14 ENSMUSG00000023328 ENSMUST00000137126 Ache protein_coding Interval_160717 chr8 111781381 111782037 + 0 NA intron (ENSMUSG00000031954.6, intron 5 of 6) protein_coding-intron (ENSMUSG00000031954.6, intron 5 of 6) -49573 ENSMUSG00000031955.10 ENSMUSG00000031955 ENSMUST00000212147 Bcar1 protein_coding Interval_119131 chr4 135750953 135751618 + 0 NA exon (ENSMUSG00000037157.8, exon 7 of 7) protein_coding-exon (ENSMUSG00000037157.8, exon 7 of 7) 5410 ENSMUSG00000082743.1 ENSMUSG00000082743 ENSMUST00000119054 Gm12988 processed_pseudogene Interval_11024 chr1 178489339 178489582 + 0 NA Intergenic Intergenic -39665 ENSMUSG00000026494.12 ENSMUSG00000026494 ENSMUST00000160789 Kif26b protein_coding Interval_61612 chr15 82952136 82953323 + 0 NA intron (ENSMUSG00000041852.15, intron 1 of 1) protein_coding-intron (ENSMUSG00000041852.15, intron 1 of 1) 6567 ENSMUSG00000092751.1 ENSMUSG00000092751 ENSMUST00000175010 Mir3080 miRNA Interval_93651 chr2 75616886 75617671 + 0 NA Intergenic Intergenic 16104 ENSMUSG00000082152.1 ENSMUSG00000082152 ENSMUST00000119695 Gm13655 processed_pseudogene Interval_50722 chr14 18565507 18566222 + 0 NA Intergenic Intergenic -20732 ENSMUSG00000114529.1 ENSMUSG00000114529 ENSMUST00000224515 Gm4939 processed_pseudogene Interval_58686 chr15 37042636 37042821 + 0 NA exon (ENSMUSG00000097259.2, exon 7 of 7) antisense-exon (ENSMUSG00000097259.2, exon 7 of 7) 35145 ENSMUSG00000097259.2 ENSMUSG00000097259 ENSMUST00000227544 Gm26766 antisense Interval_36305 chr12 40982382 40983931 + 0 NA Intergenic Intergenic 37096 ENSMUSG00000114130.1 ENSMUSG00000114130 ENSMUST00000222200 Gm18954 processed_pseudogene Interval_174650 chrX 162158334 162160521 + 0 NA promoter-TSS (ENSMUSG00000059493.13) protein_coding-promoter-TSS (ENSMUSG00000059493.13) 303 ENSMUSG00000059493.13 ENSMUSG00000059493 ENSMUST00000081569 Nhs protein_coding Interval_154681 chr8 22565765 22566806 + 0 NA intron (ENSMUSG00000037656.9, intron 10 of 10) protein_coding-intron (ENSMUSG00000037656.9, intron 10 of 10) 19836 ENSMUSG00000008892.12 ENSMUSG00000008892 ENSMUST00000211222 Vdac3 protein_coding Interval_128374 chr5 112890549 112891418 + 0 NA intron (ENSMUSG00000072720.9, intron 1 of 43) protein_coding-intron (ENSMUSG00000072720.9, intron 1 of 43) -18487 ENSMUSG00000072720.9 ENSMUSG00000072720 ENSMUST00000183273 Myo18b protein_coding Interval_128498 chr5 113661127 113661980 + 0 NA Intergenic Intergenic -11157 ENSMUSG00000042190.12 ENSMUSG00000042190 ENSMUST00000151460 Cmklr1 protein_coding Interval_121375 chr4 155326009 155326391 + 0 NA intron (ENSMUSG00000029053.16, intron 4 of 17) protein_coding-intron (ENSMUSG00000029053.16, intron 4 of 17) -17483 ENSMUSG00000098729.1 ENSMUSG00000098729 ENSMUST00000184626 Gm27200 antisense Interval_167556 chr9 70447732 70447976 + 0 NA intron (ENSMUSG00000032217.13, intron 2 of 4) protein_coding-intron (ENSMUSG00000032217.13, intron 8 of 14) 5992 ENSMUSG00000032217.13 ENSMUSG00000032217 ENSMUST00000213694 Rnf111 protein_coding Interval_51275 chr14 25675623 25676777 + 0 NA Intergenic Intergenic -17994 ENSMUSG00000021868.7 ENSMUSG00000021868 ENSMUST00000223872 Ppif protein_coding Interval_95210 chr2 104815735 104818291 + 0 NA promoter-TSS (ENSMUSG00000074994.6) protein_coding-promoter-TSS (ENSMUSG00000074994.6) -253 ENSMUSG00000074994.6 ENSMUSG00000074994 ENSMUST00000238887 Qser1 protein_coding Interval_39534 chr12 89481789 89482992 + 0 NA intron (ENSMUSG00000066392.12, intron 7 of 18) protein_coding-intron (ENSMUSG00000066392.12, intron 8 of 19) 51054 ENSMUSG00000080680.1 ENSMUSG00000080680 ENSMUST00000117030 Gm23989 miRNA Interval_127274 chr5 102048252 102048645 + 0 NA intron (ENSMUSG00000043940.15, intron 1 of 15) protein_coding-intron (ENSMUSG00000043940.15, intron 1 of 66) 9621 ENSMUSG00000105761.1 ENSMUSG00000105761 ENSMUST00000197792 Gm43787 TEC Interval_106076 chr3 92640019 92640461 + 0 NA Intergenic Intergenic 8067 ENSMUSG00000057609.6 ENSMUSG00000057609 ENSMUST00000074142 Lce1a1 protein_coding Interval_172159 chrX 8073895 8075224 + 0 NA promoter-TSS (ENSMUSG00000039231.18) protein_coding-promoter-TSS (ENSMUSG00000039231.18) 62 ENSMUSG00000039231.18 ENSMUSG00000039231 ENSMUST00000127617 Suv39h1 protein_coding Interval_118320 chr4 130284671 130285720 + 0 NA Intergenic Intergenic -9650 ENSMUSG00000023232.17 ENSMUSG00000023232 ENSMUST00000154846 Serinc2 protein_coding Interval_93956 chr2 79999296 79999502 + 0 NA intron (ENSMUSG00000059173.19, intron 1 of 15) protein_coding-intron (ENSMUSG00000059173.19, intron 2 of 15) 129540 ENSMUSG00000059173.19 ENSMUSG00000059173 ENSMUST00000125887 Pde1a protein_coding Interval_106552 chr3 97177678 97179282 + 0 NA Intergenic Intergenic 19384 ENSMUSG00000028093.15 ENSMUSG00000028093 ENSMUST00000198329 Acp6 protein_coding Interval_12178 chr1 190582502 190582826 + 0 NA Intergenic Intergenic -11662 ENSMUSG00000103963.1 ENSMUSG00000103963 ENSMUST00000191893 Gm30932 lincRNA Interval_73716 chr17 42954779 42955580 + 0 NA Intergenic Intergenic -61389 ENSMUSG00000023915.5 ENSMUSG00000023915 ENSMUST00000233482 Tnfrsf21 protein_coding Interval_90747 chr2 32264380 32264691 + 0 NA Intergenic Intergenic -4902 ENSMUSG00000002550.16 ENSMUSG00000002550 ENSMUST00000134351 Uck1 protein_coding Interval_71658 chr17 25187949 25189566 + 0 NA promoter-TSS (ENSMUSG00000015127.14) protein_coding-promoter-TSS (ENSMUSG00000015127.14) 4203 ENSMUSG00000067722.4 ENSMUSG00000067722 ENSMUST00000232784 BC003965 protein_coding Interval_135369 chr6 38669685 38670003 + 0 NA intron (ENSMUSG00000079598.4, intron 1 of 3) protein_coding-intron (ENSMUSG00000079598.4, intron 1 of 4) 5965 ENSMUSG00000079598.4 ENSMUSG00000079598 ENSMUST00000238216 Clec2l protein_coding Interval_169223 chr9 95639933 95640672 + 0 NA intron (ENSMUSG00000015354.8, intron 2 of 8) protein_coding-intron (ENSMUSG00000015354.8, intron 2 of 8) -2037 ENSMUSG00000086248.2 ENSMUSG00000086248 ENSMUST00000131619 Gm16127 processed_transcript Interval_1657 chr1 30835620 30835967 + 0 NA exon (ENSMUSG00000103783.1, exon 1 of 1) TEC-exon (ENSMUSG00000103783.1, exon 1 of 1) 638 ENSMUSG00000103783.1 ENSMUSG00000103783 ENSMUST00000195437 Gm37522 TEC Interval_5966 chr1 93593970 93594155 + 0 NA intron (ENSMUSG00000034066.13, intron 13 of 26) protein_coding-intron (ENSMUSG00000034066.13, intron 13 of 26) -41131 ENSMUSG00000100927.1 ENSMUSG00000100927 ENSMUST00000190971 Gm28536 antisense Interval_91566 chr2 43517771 43518129 + 0 NA TTS (ENSMUSG00000080994.2) processed_pseudogene-TTS (ENSMUSG00000080994.2) 1448 ENSMUSG00000080994.2 ENSMUSG00000080994 ENSMUST00000119418 Gm13464 processed_pseudogene Interval_58554 chr15 36024945 36025129 + 0 NA intron (ENSMUSG00000037627.16, intron 2 of 6) protein_coding-intron (ENSMUSG00000037627.16, intron 22 of 27) -3861 ENSMUSG00000088786.1 ENSMUSG00000088786 ENSMUST00000158161 Gm25372 misc_RNA Interval_115464 chr4 99179549 99180450 + 0 NA Intergenic Intergenic -14148 ENSMUSG00000028550.15 ENSMUSG00000028550 ENSMUST00000152121 Atg4c protein_coding Interval_16404 chr10 62747636 62747840 + 0 NA intron (ENSMUSG00000020074.7, intron 21 of 24) protein_coding-intron (ENSMUSG00000020074.7, intron 21 of 24) 12611 ENSMUSG00000020074.7 ENSMUSG00000020074 ENSMUST00000218946 Ccar1 protein_coding Interval_113740 chr4 57942067 57943381 + 0 NA TTS (ENSMUSG00000028367.5) protein_coding-TTS (ENSMUSG00000028367.5) 13687 ENSMUSG00000028367.5 ENSMUSG00000028367 ENSMUST00000030051 Txn1 protein_coding Interval_164307 chr9 35192768 35193633 + 0 NA intron (ENSMUSG00000032041.15, intron 1 of 4) protein_coding-intron (ENSMUSG00000032041.15, intron 2 of 6) 4537 ENSMUSG00000110774.1 ENSMUSG00000110774 ENSMUST00000214606 Gm39318 antisense Interval_7050 chr1 123855891 123856207 + 0 NA intron (ENSMUSG00000036815.17, intron 2 of 25) protein_coding-intron (ENSMUSG00000036815.17, intron 2 of 25) -25890 ENSMUSG00000102940.1 ENSMUSG00000102940 ENSMUST00000195556 Gm37551 TEC Interval_82516 chr18 74822855 74823974 + 0 NA Intergenic Intergenic 30031 ENSMUSG00000036880.10 ENSMUSG00000036880 ENSMUST00000237306 Acaa2 protein_coding Interval_126022 chr5 76910585 76912299 + 0 NA Intergenic Intergenic -16364 ENSMUSG00000055923.16 ENSMUSG00000055923 ENSMUST00000134805 Aasdh protein_coding Interval_50666 chr14 17890504 17890781 + 0 NA intron (ENSMUSG00000021779.17, intron 2 of 9) protein_coding-intron (ENSMUSG00000021779.17, intron 2 of 9) -5509 ENSMUSG00000084722.1 ENSMUSG00000084722 ENSMUST00000122773 Gm24140 misc_RNA Interval_5159 chr1 86117564 86118201 + 0 NA intron (ENSMUSG00000026229.17, intron 2 of 6) protein_coding-intron (ENSMUSG00000026229.17, intron 17 of 24) -3001 ENSMUSG00000103272.1 ENSMUSG00000103272 ENSMUST00000195317 Gm37914 TEC Interval_119034 chr4 135110877 135111229 + 0 NA Intergenic Intergenic 9394 ENSMUSG00000086884.1 ENSMUSG00000086884 ENSMUST00000146152 Gm16225 lincRNA Interval_42774 chr13 19364329 19364753 + 0 NA TTS (ENSMUSG00000003062.13) protein_coding-TTS (ENSMUSG00000003062.13) 19983 ENSMUSG00000076757.9 ENSMUSG00000076757 ENSMUST00000179181 Trgc4 TR_C_gene Interval_105937 chr3 90182019 90182236 + 0 NA intron (ENSMUSG00000027939.11, intron 26 of 39) protein_coding-intron (ENSMUSG00000027939.11, intron 26 of 39) -16555 ENSMUSG00000084527.1 ENSMUSG00000084527 ENSMUST00000122578 Gm24185 snRNA Interval_17254 chr10 75316265 75318003 + 0 NA promoter-TSS (ENSMUSG00000020178.6) protein_coding-promoter-TSS (ENSMUSG00000020178.6) -5986 ENSMUSG00000020178.6 ENSMUSG00000020178 ENSMUST00000217703 Adora2a protein_coding Interval_119086 chr4 135439271 135440759 + 0 NA Intergenic Intergenic -6192 ENSMUSG00000059713.12 ENSMUSG00000059713 ENSMUST00000156635 Rcan3 protein_coding Interval_29877 chr11 87478125 87479753 + 0 NA intron (ENSMUSG00000010342.16, intron 3 of 3) protein_coding-intron (ENSMUSG00000010342.16, intron 3 of 30) 7571 ENSMUSG00000105115.1 ENSMUSG00000105115 ENSMUST00000196353 Rnu3b2 snoRNA Interval_158590 chr8 84654769 84657055 + 0 NA Intergenic Intergenic 6942 ENSMUSG00000053560.5 ENSMUSG00000053560 ENSMUST00000060427 Ier2 protein_coding Interval_140896 chr6 122643974 122644822 + 0 NA Intergenic Intergenic 17645 ENSMUSG00000046323.8 ENSMUSG00000046323 ENSMUST00000123429 Dppa3 protein_coding Interval_78137 chr18 9202171 9202920 + 0 NA Intergenic Intergenic -9618 ENSMUSG00000036904.6 ENSMUSG00000036904 ENSMUST00000041080 Fzd8 protein_coding Interval_123965 chr5 36902465 36903347 + 0 NA intron (ENSMUSG00000029120.10, intron 1 of 3) protein_coding-intron (ENSMUSG00000029120.10, intron 1 of 8) -7208 ENSMUSG00000106934.1 ENSMUSG00000106934 ENSMUST00000202009 Gm42506 TEC Interval_135814 chr6 47525417 47526374 + 0 NA TTS (ENSMUSG00000029686.15) protein_coding-TTS (ENSMUSG00000029686.15) 6199 ENSMUSG00000029686.15 ENSMUSG00000029686 ENSMUST00000149531 Cul1 protein_coding Interval_82298 chr18 70410939 70411411 + 0 NA Intergenic Intergenic 22681 ENSMUSG00000110495.1 ENSMUSG00000110495 ENSMUST00000212521 Gm45879 unitary_pseudogene Interval_148398 chr7 81020426 81022138 + 0 NA intron (ENSMUSG00000005621.11, intron 2 of 9) protein_coding-intron (ENSMUSG00000005621.11, intron 2 of 9) -2138 ENSMUSG00000005621.11 ENSMUSG00000005621 ENSMUST00000125137 Zfp592 protein_coding Interval_27175 chr11 63784463 63784775 + 0 NA Intergenic Intergenic 33681 ENSMUSG00000083142.1 ENSMUSG00000083142 ENSMUST00000121054 Gm12288 processed_pseudogene Interval_79112 chr18 24666936 24667215 + 0 NA intron (ENSMUSG00000039616.10, intron 4 of 11) protein_coding-intron (ENSMUSG00000039616.10, intron 4 of 14) 13197 ENSMUSG00000039616.10 ENSMUSG00000039616 ENSMUST00000234253 Mocos protein_coding Interval_42095 chr13 8669840 8670301 + 0 NA intron (ENSMUSG00000052551.16, intron 3 of 10) protein_coding-intron (ENSMUSG00000052551.16, intron 3 of 9) 117050 ENSMUSG00000113742.1 ENSMUSG00000113742 ENSMUST00000220604 Gm48262 TEC Interval_39760 chr12 97564790 97565039 + 0 NA exon (ENSMUSG00000112590.1, exon 1 of 1) processed_pseudogene-exon (ENSMUSG00000112590.1, exon 1 of 1) 154 ENSMUSG00000112590.1 ENSMUSG00000112590 ENSMUST00000218781 Gm5186 processed_pseudogene Interval_103645 chr3 51377810 51378918 + 0 NA exon (ENSMUSG00000102544.1, exon 1 of 3) lincRNA-exon (ENSMUSG00000102544.1, exon 1 of 3) 288 ENSMUSG00000102544.1 ENSMUSG00000102544 ENSMUST00000195545 Gm5103 lincRNA Interval_167334 chr9 67516203 67516496 + 0 NA intron (ENSMUSG00000052698.15, intron 1 of 57) protein_coding-intron (ENSMUSG00000052698.15, intron 1 of 57) 91846 ENSMUSG00000111412.1 ENSMUSG00000111412 ENSMUST00000216972 Gm47047 antisense Interval_137215 chr6 70143665 70144150 + 0 NA promoter-TSS (ENSMUSG00000094356.2) IG_V_gene-promoter-TSS (ENSMUSG00000094356.2) 259 ENSMUSG00000094356.2 ENSMUSG00000094356 ENSMUST00000197525 Igkv8-28 IG_V_gene Interval_81429 chr18 60705523 60706502 + 0 NA intron (ENSMUSG00000054008.9, intron 3 of 14) protein_coding-intron (ENSMUSG00000054008.9, intron 2 of 13) 27138 ENSMUSG00000054008.9 ENSMUSG00000054008 ENSMUST00000237070 Ndst1 protein_coding Interval_11470 chr1 182068127 182069051 + 0 NA Intergenic Intergenic -2814 ENSMUSG00000103379.1 ENSMUSG00000103379 ENSMUST00000193768 Gm37177 processed_pseudogene Interval_84847 chr19 17442282 17442685 + 0 NA intron (ENSMUSG00000024713.16, intron 35 of 37) protein_coding-intron (ENSMUSG00000024713.16, intron 35 of 37) 45046 ENSMUSG00000024712.9 ENSMUSG00000024712 ENSMUST00000146171 Rfk protein_coding Interval_154371 chr8 15065240 15065426 + 0 NA intron (ENSMUSG00000031461.4, intron 2 of 5) protein_coding-intron (ENSMUSG00000031461.4, intron 2 of 36) 19121 ENSMUSG00000109965.1 ENSMUSG00000109965 ENSMUST00000209938 Gm45274 lincRNA Interval_11726 chr1 184912021 184912540 + 0 NA intron (ENSMUSG00000026620.11, intron 12 of 17) protein_coding-intron (ENSMUSG00000026620.11, intron 12 of 17) -10856 ENSMUSG00000102784.1 ENSMUSG00000102784 ENSMUST00000192968 Gm38251 antisense Interval_47641 chr13 90604640 90605003 + 0 NA Intergenic Intergenic 21492 ENSMUSG00000094277.2 ENSMUSG00000094277 ENSMUST00000179654 Gm21726 processed_pseudogene Interval_5427 chr1 88705281 88706318 + 0 NA Intergenic Intergenic -3923 ENSMUSG00000049866.12 ENSMUSG00000049866 ENSMUST00000159814 Arl4c protein_coding Interval_118910 chr4 134412884 134413679 + 0 NA intron (ENSMUSG00000037366.14, intron 3 of 6) protein_coding-intron (ENSMUSG00000037366.14, intron 6 of 10) 15958 ENSMUSG00000037366.14 ENSMUSG00000037366 ENSMUST00000145626 Pafah2 protein_coding Interval_155665 chr8 35881853 35883762 + 0 NA intron (ENSMUSG00000109761.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000109761.1, intron 1 of 2) 150 ENSMUSG00000109761.1 ENSMUSG00000109761 ENSMUST00000210717 5430403N17Rik lincRNA Interval_164511 chr9 37591398 37592086 + 0 NA intron (ENSMUSG00000001942.8, intron 2 of 10) protein_coding-intron (ENSMUSG00000001942.8, intron 2 of 10) 21980 ENSMUSG00000001948.10 ENSMUSG00000001948 ENSMUST00000215336 Spa17 protein_coding Interval_31828 chr11 103174699 103175333 + 0 NA intron (ENSMUSG00000055805.15, intron 1 of 26) protein_coding-intron (ENSMUSG00000055805.15, intron 1 of 25) 3909 ENSMUSG00000055805.15 ENSMUSG00000055805 ENSMUST00000129726 Fmnl1 protein_coding Interval_44320 chr13 43595322 43596418 + 0 NA Intergenic Intergenic -20113 ENSMUSG00000044164.2 ENSMUSG00000044164 ENSMUST00000161817 Rnf182 protein_coding Interval_60798 chr15 76843196 76843523 + 0 NA Intergenic Intergenic -25189 ENSMUSG00000033697.16 ENSMUSG00000033697 ENSMUST00000176736 Arhgap39 protein_coding Interval_143815 chr7 16466710 16467892 + 0 NA intron (ENSMUSG00000001988.9, intron 3 of 9) protein_coding-intron (ENSMUSG00000001988.9, intron 3 of 11) -4512 ENSMUSG00000065893.1 ENSMUSG00000065893 ENSMUST00000083959 n-R5s151 rRNA Interval_15133 chr10 42817823 42818174 + 0 NA promoter-TSS (ENSMUSG00000019802.13) protein_coding-promoter-TSS (ENSMUSG00000019802.13) 2769 ENSMUSG00000087719.1 ENSMUSG00000087719 ENSMUST00000157094 Gm26464 ribozyme Interval_11846 chr1 186236334 186237247 + 0 NA Intergenic Intergenic 54533 ENSMUSG00000102790.1 ENSMUSG00000102790 ENSMUST00000193401 Gm37272 TEC Interval_29259 chr11 82399764 82400233 + 0 NA intron (ENSMUSG00000020701.12, intron 1 of 1) protein_coding-intron (ENSMUSG00000020701.12, intron 1 of 8) -12658 ENSMUSG00000113710.1 ENSMUSG00000113710 ENSMUST00000221531 Gm38577 lincRNA Interval_80126 chr18 37751510 37753750 + 0 NA exon (ENSMUSG00000097330.2, exon 3 of 3) processed_transcript-exon (ENSMUSG00000097330.2, exon 3 of 3) 1030 ENSMUSG00000104063.1 ENSMUSG00000104063 ENSMUST00000194928 Pcdhgb7 protein_coding Interval_74438 chr17 50526066 50526287 + 0 NA intron (ENSMUSG00000038910.7, intron 1 of 5) protein_coding-intron (ENSMUSG00000038910.7, intron 1 of 5) -80818 ENSMUSG00000038910.7 ENSMUSG00000038910 ENSMUST00000233823 Plcl2 protein_coding Interval_96435 chr2 122725542 122726238 + 0 NA Intergenic Intergenic 12472 ENSMUSG00000085633.1 ENSMUSG00000085633 ENSMUST00000150154 Bloc1s6os antisense Interval_130255 chr5 125241618 125242384 + 0 NA intron (ENSMUSG00000105039.1, intron 2 of 3) lincRNA-intron (ENSMUSG00000105039.1, intron 2 of 3) 30814 ENSMUSG00000105039.1 ENSMUSG00000105039 ENSMUST00000198586 Gm32585 lincRNA Interval_6248 chr1 104653870 104654235 + 0 NA Intergenic Intergenic -20694 ENSMUSG00000099801.1 ENSMUSG00000099801 ENSMUST00000191059 Gm29011 processed_pseudogene Interval_6047 chr1 94921495 94922076 + 0 NA Intergenic Intergenic 118258 ENSMUSG00000089310.1 ENSMUSG00000089310 ENSMUST00000158685 Gm23181 snoRNA Interval_140895 chr6 122639955 122641207 + 0 NA Intergenic Intergenic 13828 ENSMUSG00000046323.8 ENSMUSG00000046323 ENSMUST00000123429 Dppa3 protein_coding Interval_16751 chr10 67923839 67924377 + 0 NA Intergenic Intergenic -11673 ENSMUSG00000037855.15 ENSMUSG00000037855 ENSMUST00000138543 Zfp365 protein_coding Interval_97505 chr2 138066997 138067263 + 0 NA Intergenic Intergenic -189532 ENSMUSG00000062098.11 ENSMUSG00000062098 ENSMUST00000075410 Btbd3 protein_coding Interval_89052 chr2 15063204 15064300 + 0 NA intron (ENSMUSG00000017418.14, intron 1 of 1) protein_coding-intron (ENSMUSG00000017418.14, intron 1 of 5) 7039 ENSMUSG00000102258.1 ENSMUSG00000102258 ENSMUST00000195881 Gm38257 TEC Interval_90963 chr2 33746140 33746730 + 0 NA intron (ENSMUSG00000038740.9, intron 9 of 9) protein_coding-intron (ENSMUSG00000038740.9, intron 9 of 9) -27536 ENSMUSG00000085463.1 ENSMUSG00000085463 ENSMUST00000130532 9430024E24Rik lincRNA Interval_101163 chr2 178670158 178670420 + 0 NA Intergenic Intergenic 209659 ENSMUSG00000039155.15 ENSMUSG00000039155 ENSMUST00000176869 Cdh26 protein_coding Interval_79037 chr18 24111935 24112976 + 0 NA intron (ENSMUSG00000047989.11, intron 3 of 4) protein_coding-intron (ENSMUSG00000047989.11, intron 3 of 5) 9498 ENSMUSG00000047989.11 ENSMUSG00000047989 ENSMUST00000125169 Ino80c protein_coding Interval_49422 chr13 111870058 111870303 + 0 NA promoter-TSS (ENSMUSG00000086111.1) lincRNA-promoter-TSS (ENSMUSG00000086111.1) 2244 ENSMUSG00000086111.1 ENSMUSG00000086111 ENSMUST00000127817 Gm15326 lincRNA Interval_109418 chr3 142124709 142124913 + 0 NA intron (ENSMUSG00000052430.15, intron 1 of 11) protein_coding-intron (ENSMUSG00000052430.15, intron 1 of 11) 59940 ENSMUSG00000105015.1 ENSMUSG00000105015 ENSMUST00000196903 Gm6059 processed_pseudogene Interval_16821 chr10 68472285 68472503 + 0 NA intron (ENSMUSG00000019945.10, intron 3 of 5) protein_coding-intron (ENSMUSG00000019945.10, intron 5 of 7) 53373 ENSMUSG00000019945.10 ENSMUSG00000019945 ENSMUST00000166919 Cabcoco1 protein_coding Interval_48657 chr13 100888576 100888965 + 0 NA intron (ENSMUSG00000100596.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000100596.1, intron 1 of 2) 15990 ENSMUSG00000104450.1 ENSMUSG00000104450 ENSMUST00000195282 Gm37830 TEC Interval_83190 chr18 82666520 82666733 + 0 NA intron (ENSMUSG00000041258.18, intron 6 of 31) protein_coding-intron (ENSMUSG00000041258.18, intron 6 of 29) 15573 ENSMUSG00000118160.1 ENSMUSG00000118160 ENSMUST00000237388 Gm50347 unprocessed_pseudogene Interval_103283 chr3 37957719 37959377 + 0 NA intron (ENSMUSG00000106461.1, intron 2 of 3) lincRNA-intron (ENSMUSG00000106461.1, intron 2 of 3) 1539 ENSMUSG00000087457.1 ENSMUSG00000087457 ENSMUST00000133080 Gm7799 processed_pseudogene Interval_127176 chr5 100835367 100836369 + 0 NA Intergenic Intergenic 4587 ENSMUSG00000077354.1 ENSMUSG00000077354 ENSMUST00000104166 Gm26286 snoRNA Interval_48540 chr13 99958363 99958565 + 0 NA TTS (ENSMUSG00000021646.9) protein_coding-TTS (ENSMUSG00000021646.9) 16852 ENSMUSG00000021646.9 ENSMUSG00000021646 ENSMUST00000221846 Mccc2 protein_coding Interval_151563 chr7 123665419 123666578 + 0 NA Intergenic Intergenic -185069 ENSMUSG00000030757.13 ENSMUSG00000030757 ENSMUST00000128217 Zkscan2 protein_coding Interval_171558 chr9 119197408 119197697 + 0 NA intron (ENSMUSG00000074028.4, intron 1 of 9) protein_coding-intron (ENSMUSG00000074028.4, intron 1 of 9) 11546 ENSMUSG00000074028.4 ENSMUSG00000074028 ENSMUST00000084797 Slc22a13 protein_coding Interval_158617 chr8 84773906 84776096 + 0 NA promoter-TSS (ENSMUSG00000001911.16) protein_coding-promoter-TSS (ENSMUSG00000001911.16) 51994 ENSMUSG00000074203.4 ENSMUSG00000074203 ENSMUST00000098571 G430095P16Rik protein_coding Interval_166714 chr9 62220872 62221145 + 0 NA Intergenic Intergenic -20662 ENSMUSG00000110826.1 ENSMUSG00000110826 ENSMUST00000217557 Gm47262 lincRNA Interval_58530 chr15 35756685 35757726 + 0 NA intron (ENSMUSG00000037646.10, intron 35 of 61) protein_coding-intron (ENSMUSG00000037646.10, intron 35 of 61) 23601 ENSMUSG00000115040.1 ENSMUSG00000115040 ENSMUST00000228224 Gm18994 processed_pseudogene Interval_57269 chr15 8260146 8260391 + 0 NA intron (ENSMUSG00000039801.7, intron 47 of 52) protein_coding-intron (ENSMUSG00000039801.7, intron 47 of 52) 37125 ENSMUSG00000039801.7 ENSMUSG00000039801 ENSMUST00000128772 Cplane1 protein_coding Interval_53280 chr14 55758438 55758716 + 0 NA promoter-TSS (ENSMUSG00000022219.10) protein_coding-promoter-TSS (ENSMUSG00000022219.10) -198 ENSMUSG00000022219.10 ENSMUSG00000022219 ENSMUST00000136270 Cideb protein_coding Interval_164145 chr9 31975808 31976549 + 0 NA intron (ENSMUSG00000111771.1, intron 2 of 3) lincRNA-intron (ENSMUSG00000111771.1, intron 2 of 3) 27832 ENSMUSG00000111166.1 ENSMUSG00000111166 ENSMUST00000213734 Tpi-rs4 processed_pseudogene Interval_82625 chr18 75502778 75503399 + 0 NA intron (ENSMUSG00000052928.9, intron 9 of 11) protein_coding-intron (ENSMUSG00000052928.9, intron 9 of 11) -11557 ENSMUSG00000097712.1 ENSMUSG00000097712 ENSMUST00000181913 Gm10532 antisense Interval_156094 chr8 44357028 44357247 + 0 NA Intergenic Intergenic -128592 ENSMUSG00000102378.1 ENSMUSG00000102378 ENSMUST00000193497 Gm37972 TEC Interval_52628 chr14 48126685 48127683 + 0 NA intron (ENSMUSG00000021846.9, intron 1 of 2) protein_coding-intron (ENSMUSG00000021846.9, intron 1 of 5) 2979 ENSMUSG00000115790.1 ENSMUSG00000115790 ENSMUST00000228011 9530086P17Rik TEC Interval_18891 chr10 92643937 92644177 + 0 NA promoter-TSS (ENSMUSG00000111470.1) lincRNA-promoter-TSS (ENSMUSG00000111470.1) -34 ENSMUSG00000111470.1 ENSMUSG00000111470 ENSMUST00000216096 Gm31822 lincRNA Interval_82994 chr18 80236004 80237333 + 0 NA intron (ENSMUSG00000078963.3, intron 1 of 3) protein_coding-intron (ENSMUSG00000078963.3, intron 2 of 4) 165 ENSMUSG00000078963.3 ENSMUSG00000078963 ENSMUST00000166219 Hsbp1l1 protein_coding Interval_92464 chr2 59876314 59877038 + 0 NA TTS (ENSMUSG00000026988.15) protein_coding-TTS (ENSMUSG00000026988.15) -13950 ENSMUSG00000026988.15 ENSMUSG00000026988 ENSMUST00000131285 Wdsub1 protein_coding Interval_39078 chr12 84893875 84894109 + 0 NA Intergenic Intergenic 12168 ENSMUSG00000113079.1 ENSMUSG00000113079 ENSMUST00000221790 Gm48709 lincRNA Interval_18750 chr10 89964508 89965200 + 0 NA intron (ENSMUSG00000058589.14, intron 1 of 16) protein_coding-intron (ENSMUSG00000058589.14, intron 1 of 17) 91345 ENSMUSG00000058589.14 ENSMUSG00000058589 ENSMUST00000183024 Anks1b protein_coding Interval_137649 chr6 77616995 77617408 + 0 NA intron (ENSMUSG00000063063.12, intron 6 of 7) protein_coding-intron (ENSMUSG00000063063.12, intron 6 of 17) -28720 ENSMUSG00000107707.1 ENSMUSG00000107707 ENSMUST00000204098 Gm44286 TEC Interval_132641 chr5 146911251 146912564 + 0 NA Intergenic Intergenic -36750 ENSMUSG00000016503.18 ENSMUSG00000016503 ENSMUST00000133296 Gtf3a protein_coding Interval_52820 chr14 50870032 50871538 + 0 NA promoter-TSS (ENSMUSG00000006281.8) protein_coding-promoter-TSS (ENSMUSG00000006281.8) 401 ENSMUSG00000097431.2 ENSMUSG00000097431 ENSMUST00000228254 Gm26782 antisense Interval_144402 chr7 24946193 24948080 + 0 NA Intergenic Intergenic -2642 ENSMUSG00000108367.2 ENSMUSG00000108367 ENSMUST00000206705 Erfl protein_coding Interval_56145 chr14 107027377 107027851 + 0 NA Intergenic Intergenic 261584 ENSMUSG00000077224.1 ENSMUSG00000077224 ENSMUST00000104036 Gm23437 snoRNA Interval_147540 chr7 68181174 68183319 + 0 NA intron (ENSMUSG00000005533.10, intron 4 of 6) protein_coding-intron (ENSMUSG00000005533.10, intron 5 of 20) -29592 ENSMUSG00000005533.10 ENSMUSG00000005533 ENSMUST00000208871 Igf1r protein_coding Interval_131756 chr5 139686629 139687928 + 0 NA Intergenic Intergenic -14369 ENSMUSG00000104637.1 ENSMUSG00000104637 ENSMUST00000198319 Gm42424 processed_pseudogene Interval_149050 chr7 92675045 92675878 + 0 NA Intergenic Intergenic -5558 ENSMUSG00000041328.16 ENSMUSG00000041328 ENSMUST00000208058 Pcf11 protein_coding Interval_1014 chr1 14079449 14080716 + 0 NA Intergenic Intergenic 32737 ENSMUSG00000104209.1 ENSMUSG00000104209 ENSMUST00000193148 Gm37400 TEC Interval_60894 chr15 77673860 77674769 + 0 NA Intergenic Intergenic -5578 ENSMUSG00000116356.1 ENSMUSG00000116356 ENSMUST00000231116 Gm49407 processed_pseudogene Interval_84155 chr19 7595474 7596079 + 0 NA TTS (ENSMUSG00000024972.16) protein_coding-TTS (ENSMUSG00000024972.16) 11417 ENSMUSG00000024972.16 ENSMUSG00000024972 ENSMUST00000079902 Lgals12 protein_coding Interval_74091 chr17 46543252 46543800 + 0 NA exon (ENSMUSG00000040327.16, exon 2 of 42) protein_coding-exon (ENSMUSG00000040327.16, exon 2 of 42) 8267 ENSMUSG00000015605.6 ENSMUSG00000015605 ENSMUST00000233797 Srf protein_coding Interval_89972 chr2 26948783 26950228 + 0 NA intron (ENSMUSG00000049897.14, intron 12 of 18) protein_coding-intron (ENSMUSG00000049897.14, intron 12 of 18) 6179 ENSMUSG00000052406.14 ENSMUSG00000052406 ENSMUST00000128401 Rexo4 protein_coding Interval_145320 chr7 32558817 32559412 + 0 NA Intergenic Intergenic 13355 ENSMUSG00000094827.3 ENSMUSG00000094827 ENSMUST00000182864 Gm5327 processed_pseudogene Interval_172005 chr9 123436143 123436644 + 0 NA exon (ENSMUSG00000035202.8, exon 12 of 21) protein_coding-exon (ENSMUSG00000035202.8, exon 12 of 21) -44217 ENSMUSG00000025239.3 ENSMUSG00000025239 ENSMUST00000214309 Limd1 protein_coding Interval_62531 chr15 94443002 94443931 + 0 NA intron (ENSMUSG00000022449.14, intron 1 of 3) protein_coding-intron (ENSMUSG00000022449.14, intron 1 of 3) -39208 ENSMUSG00000022449.14 ENSMUSG00000022449 ENSMUST00000128797 Adamts20 protein_coding Interval_147128 chr7 63631139 63631399 + 0 NA intron (ENSMUSG00000033510.14, intron 2 of 13) protein_coding-intron (ENSMUSG00000033510.14, intron 2 of 13) -19546 ENSMUSG00000033510.14 ENSMUSG00000033510 ENSMUST00000177511 Otud7a protein_coding Interval_102741 chr3 30710075 30711587 + 0 NA Intergenic Intergenic -11063 ENSMUSG00000074653.10 ENSMUSG00000074653 ENSMUST00000130731 Lrrc31 protein_coding Interval_24946 chr11 41833022 41833390 + 0 NA intron (ENSMUSG00000087306.7, intron 3 of 8) processed_transcript-intron (ENSMUSG00000087306.7, intron 3 of 8) -43387 ENSMUSG00000084293.1 ENSMUSG00000084293 ENSMUST00000119666 Gm12143 processed_pseudogene Interval_35163 chr12 17708889 17710545 + 0 NA intron (ENSMUSG00000071379.2, intron 1 of 3) protein_coding-intron (ENSMUSG00000071379.2, intron 1 of 3) -18509 ENSMUSG00000071379.2 ENSMUSG00000071379 ENSMUST00000222944 Hpcal1 protein_coding Interval_46117 chr13 61835108 61837056 + 0 NA intron (ENSMUSG00000113626.1, intron 1 of 2) transcribed_processed_pseudogene-intron (ENSMUSG00000113626.1, intron 1 of 2) -12418 ENSMUSG00000080451.1 ENSMUSG00000080451 ENSMUST00000116801 Gm24193 miRNA Interval_33675 chr11 117866486 117867168 + 0 NA Intergenic Intergenic -4423 ENSMUSG00000085434.1 ENSMUSG00000085434 ENSMUST00000125607 Gm11725 antisense Interval_57028 chr15 4598957 4599528 + 0 NA Intergenic Intergenic -166703 ENSMUSG00000022181.16 ENSMUSG00000022181 ENSMUST00000162729 C6 protein_coding Interval_130034 chr5 123820813 123821237 + 0 NA intron (ENSMUSG00000029414.11, intron 8 of 8) protein_coding-intron (ENSMUSG00000029414.11, intron 63 of 63) 44474 ENSMUSG00000045502.6 ENSMUSG00000045502 ENSMUST00000057145 Hcar2 protein_coding Interval_153919 chr8 11109886 11110081 + 0 NA Intergenic Intergenic -6572 ENSMUSG00000109151.1 ENSMUSG00000109151 ENSMUST00000208665 Gm44714 lincRNA Interval_30209 chr11 90637564 90638960 + 0 NA promoter-TSS (ENSMUSG00000020544.14) protein_coding-promoter-TSS (ENSMUSG00000020544.14) -178 ENSMUSG00000020546.14 ENSMUSG00000020546 ENSMUST00000132078 Stxbp4 protein_coding Interval_23077 chr11 19757422 19757630 + 0 NA Intergenic Intergenic -7460 ENSMUSG00000083601.1 ENSMUSG00000083601 ENSMUST00000118065 Gm12028 processed_pseudogene Interval_62137 chr15 87894407 87895958 + 0 NA Intergenic Intergenic -72234 ENSMUSG00000116061.1 ENSMUSG00000116061 ENSMUST00000229118 Gm49472 lincRNA Interval_97090 chr2 131168020 131169270 + 0 NA intron (ENSMUSG00000087405.1, intron 1 of 1) antisense-intron (ENSMUSG00000087405.1, intron 1 of 1) 6008 ENSMUSG00000027329.9 ENSMUSG00000027329 ENSMUST00000127987 Spef1 protein_coding Interval_114721 chr4 84311642 84311911 + 0 NA intron (ENSMUSG00000028487.18, intron 5 of 5) protein_coding-intron (ENSMUSG00000028487.18, intron 6 of 7) -19846 ENSMUSG00000028487.18 ENSMUSG00000028487 ENSMUST00000176370 Bnc2 protein_coding Interval_44778 chr13 48552185 48552900 + 0 NA Intergenic Intergenic -6042 ENSMUSG00000097375.3 ENSMUSG00000097375 ENSMUST00000181490 6720427I07Rik lincRNA Interval_23630 chr11 23964449 23965428 + 0 NA Intergenic Intergenic -36084 ENSMUSG00000084206.1 ENSMUSG00000084206 ENSMUST00000117533 Gm12062 processed_pseudogene Interval_141788 chr6 134521660 134521974 + 0 NA intron (ENSMUSG00000030201.15, intron 1 of 3) protein_coding-intron (ENSMUSG00000030201.15, intron 2 of 22) -54056 ENSMUSG00000030201.15 ENSMUSG00000030201 ENSMUST00000203235 Lrp6 protein_coding Interval_85764 chr19 30553768 30555071 + 0 NA Intergenic Intergenic -4754 ENSMUSG00000024868.8 ENSMUSG00000024868 ENSMUST00000025803 Dkk1 protein_coding Interval_160362 chr8 108748284 108749448 + 0 NA intron (ENSMUSG00000038872.10, intron 1 of 9) protein_coding-intron (ENSMUSG00000038872.10, intron 1 of 9) 11273 ENSMUSG00000104292.1 ENSMUSG00000104292 ENSMUST00000191614 Gm38042 TEC Interval_104973 chr3 79433780 79435878 + 0 NA intron (ENSMUSG00000091685.6, intron 3 of 4) protein_coding-intron (ENSMUSG00000091685.6, intron 3 of 4) 89450 ENSMUSG00000091685.6 ENSMUSG00000091685 ENSMUST00000199658 Gm17359 protein_coding Interval_169983 chr9 103419000 103419569 + 0 NA intron (ENSMUSG00000111399.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000111399.1, intron 1 of 1) 3916 ENSMUSG00000111399.1 ENSMUSG00000111399 ENSMUST00000216687 Gm47328 lincRNA Interval_104431 chr3 65580138 65580364 + 0 NA Intergenic Intergenic -33338 ENSMUSG00000082280.4 ENSMUSG00000082280 ENSMUST00000178959 Gm5847 processed_pseudogene Interval_93674 chr2 75751428 75753003 + 0 NA Intergenic Intergenic -22043 ENSMUSG00000087527.1 ENSMUSG00000087527 ENSMUST00000123829 Gm13656 lincRNA Interval_31785 chr11 102835700 102836382 + 0 NA promoter-TSS (ENSMUSG00000020928.14) protein_coding-promoter-TSS (ENSMUSG00000020928.14) 192 ENSMUSG00000020928.14 ENSMUSG00000020928 ENSMUST00000107072 Higd1b protein_coding Interval_134930 chr6 33808377 33809185 + 0 NA intron (ENSMUSG00000029763.17, intron 2 of 4) protein_coding-intron (ENSMUSG00000029763.17, intron 11 of 17) -116627 ENSMUSG00000107103.1 ENSMUSG00000107103 ENSMUST00000202529 Gm43164 TEC Interval_74571 chr17 53495917 53496946 + 0 NA intron (ENSMUSG00000117128.1, intron 1 of 1) protein_coding-intron (ENSMUSG00000017831.8, intron 2 of 5) 4515 ENSMUSG00000117128.1 ENSMUSG00000117128 ENSMUST00000232747 Gm49915 antisense Interval_105218 chr3 83943393 83944466 + 0 NA promoter-TSS (ENSMUSG00000033767.14) protein_coding-promoter-TSS (ENSMUSG00000033767.14) -36350 ENSMUSG00000033767.14 ENSMUSG00000033767 ENSMUST00000192811 Tmem131l protein_coding Interval_44451 chr13 44902358 44903711 + 0 NA exon (ENSMUSG00000038518.15, exon 8 of 19) protein_coding-exon (ENSMUSG00000038518.15, exon 8 of 19) -64751 ENSMUSG00000088189.1 ENSMUSG00000088189 ENSMUST00000157564 Gm22213 snoRNA Interval_31791 chr11 102892838 102893752 + 0 NA intron (ENSMUSG00000020932.14, intron 5 of 7) protein_coding-intron (ENSMUSG00000020932.14, intron 5 of 8) 7617 ENSMUSG00000020932.14 ENSMUSG00000020932 ENSMUST00000127909 Gfap protein_coding Interval_145841 chr7 40108531 40108907 + 0 NA Intergenic Intergenic -28038 ENSMUSG00000102464.2 ENSMUSG00000102464 ENSMUST00000192013 Gm38199 TEC Interval_117210 chr4 120610957 120611258 + 0 NA Intergenic Intergenic -4733 ENSMUSG00000086187.1 ENSMUSG00000086187 ENSMUST00000148457 Gm12860 lincRNA Interval_16629 chr10 66568049 66568520 + 0 NA Intergenic Intergenic -72634 ENSMUSG00000101338.1 ENSMUSG00000101338 ENSMUST00000189480 Gm28139 lincRNA Interval_125380 chr5 66573204 66573999 + 0 NA intron (ENSMUSG00000029207.16, intron 1 of 5) protein_coding-intron (ENSMUSG00000029207.16, intron 1 of 17) 21969 ENSMUSG00000106706.1 ENSMUSG00000106706 ENSMUST00000201865 C530043K16Rik TEC Interval_99823 chr2 165141184 165142042 + 0 NA intron (ENSMUSG00000053166.14, intron 6 of 10) protein_coding-intron (ENSMUSG00000053166.14, intron 7 of 11) -17799 ENSMUSG00000086630.1 ENSMUSG00000086630 ENSMUST00000124728 Gm14397 antisense Interval_70083 chr17 5189560 5190672 + 0 NA intron (ENSMUSG00000069729.14, intron 4 of 19) protein_coding-intron (ENSMUSG00000069729.14, intron 4 of 18) -78006 ENSMUSG00000081783.2 ENSMUSG00000081783 ENSMUST00000122283 Gm15599 processed_pseudogene Interval_116982 chr4 118639176 118639391 + 0 NA Intergenic Intergenic -3221 ENSMUSG00000085292.1 ENSMUSG00000085292 ENSMUST00000134971 Gm12853 antisense Interval_96116 chr2 119872324 119873661 + 0 NA Intergenic Intergenic 5411 ENSMUSG00000081056.1 ENSMUSG00000081056 ENSMUST00000120952 Gm13998 processed_pseudogene Interval_42006 chr13 6443316 6443556 + 0 NA Intergenic Intergenic 47264 ENSMUSG00000101540.2 ENSMUSG00000101540 ENSMUST00000220779 Gm28465 lincRNA Interval_167979 chr9 75221150 75222344 + 0 NA exon (ENSMUSG00000034593.16, exon 41 of 41) protein_coding-exon (ENSMUSG00000034593.16, exon 41 of 41) -10329 ENSMUSG00000033590.8 ENSMUSG00000033590 ENSMUST00000216529 Myo5c protein_coding Interval_101905 chr3 10782056 10782280 + 0 NA Intergenic Intergenic -7269 ENSMUSG00000102470.1 ENSMUSG00000102470 ENSMUST00000191748 Gm37244 TEC Interval_167803 chr9 72794383 72794854 + 0 NA Intergenic Intergenic -18393 ENSMUSG00000098294.1 ENSMUSG00000098294 ENSMUST00000184673 Gm27204 lincRNA Interval_159279 chr8 92740302 92741113 + 0 NA Intergenic Intergenic -23732 ENSMUSG00000078967.5 ENSMUSG00000078967 ENSMUST00000181181 Gapdh-ps16 processed_pseudogene Interval_150544 chr7 112216526 112217417 + 0 NA Intergenic Intergenic -57914 ENSMUSG00000030772.6 ENSMUSG00000030772 ENSMUST00000033036 Dkk3 protein_coding Interval_54647 chr14 72778974 72779923 + 0 NA Intergenic Intergenic -9905 ENSMUSG00000115532.1 ENSMUSG00000115532 ENSMUST00000227565 Gm41206 lincRNA Interval_39421 chr12 87317272 87319697 + 0 NA intron (ENSMUSG00000021036.10, intron 3 of 5) protein_coding-intron (ENSMUSG00000021036.10, intron 9 of 11) 10129 ENSMUSG00000021036.10 ENSMUSG00000021036 ENSMUST00000167911 Sptlc2 protein_coding Interval_151939 chr7 127666452 127667446 + 0 NA TTS (ENSMUSG00000030814.17) protein_coding-TTS (ENSMUSG00000030814.17) -8715 ENSMUSG00000108766.1 ENSMUSG00000108766 ENSMUST00000206375 Gm44760 TEC Interval_43784 chr13 36419488 36419788 + 0 NA intron (ENSMUSG00000021420.13, intron 6 of 7) protein_coding-intron (ENSMUSG00000021420.13, intron 6 of 6) 39642 ENSMUSG00000114714.1 ENSMUSG00000114714 ENSMUST00000224213 Gm48763 TEC Interval_121290 chr4 154754730 154754928 + 0 NA Intergenic Intergenic -82630 ENSMUSG00000046637.3 ENSMUSG00000046637 ENSMUST00000137684 Ttc34 protein_coding Interval_6652 chr1 118552458 118552952 + 0 NA intron (ENSMUSG00000064302.13, intron 6 of 14) protein_coding-intron (ENSMUSG00000064302.13, intron 30 of 39) 39988 ENSMUSG00000064302.13 ENSMUSG00000064302 ENSMUST00000187575 Clasp1 protein_coding Interval_40407 chr12 104682979 104683479 + 0 NA Intergenic Intergenic 38823 ENSMUSG00000041415.10 ENSMUSG00000041415 ENSMUST00000222002 Dicer1 protein_coding Interval_31589 chr11 101548604 101548840 + 0 NA intron (ENSMUSG00000017146.12, intron 1 of 4) protein_coding-intron (ENSMUSG00000017146.12, intron 2 of 22) -10797 ENSMUSG00000017119.19 ENSMUSG00000017119 ENSMUST00000141170 Nbr1 protein_coding Interval_48371 chr13 98579790 98580557 + 0 NA Intergenic Intergenic 19819 ENSMUSG00000093116.1 ENSMUSG00000093116 ENSMUST00000175375 Gm22698 miRNA Interval_102318 chr3 21849377 21850183 + 0 NA Intergenic Intergenic -87249 ENSMUSG00000103441.1 ENSMUSG00000103441 ENSMUST00000193217 7530428D23Rik transcribed_processed_pseudogene Interval_15911 chr10 59166226 59166815 + 0 NA exon (ENSMUSG00000019917.10, exon 9 of 10) protein_coding-exon (ENSMUSG00000019917.10, exon 9 of 10) -29179 ENSMUSG00000088744.1 ENSMUSG00000088744 ENSMUST00000158119 Gm23223 snoRNA Interval_166931 chr9 63997553 63998331 + 0 NA intron (ENSMUSG00000036867.7, intron 3 of 4) protein_coding-intron (ENSMUSG00000036867.7, intron 3 of 3) 24090 ENSMUSG00000036867.7 ENSMUSG00000036867 ENSMUST00000179458 Smad6 protein_coding Interval_49914 chr13 118202837 118203068 + 0 NA Intergenic Intergenic 155632 ENSMUSG00000114713.1 ENSMUSG00000114713 ENSMUST00000225643 Gm9633 processed_pseudogene Interval_36901 chr12 55066632 55067098 + 0 NA promoter-TSS (ENSMUSG00000113467.1) processed_pseudogene-promoter-TSS (ENSMUSG00000113467.1) 52 ENSMUSG00000113467.1 ENSMUSG00000113467 ENSMUST00000222661 Gm46350 processed_pseudogene Interval_23829 chr11 26748720 26748914 + 0 NA Intergenic Intergenic 35912 ENSMUSG00000082038.1 ENSMUSG00000082038 ENSMUST00000121968 Gm12071 processed_pseudogene Interval_130571 chr5 128947204 128948288 + 0 NA intron (ENSMUSG00000029420.14, intron 1 of 3) protein_coding-intron (ENSMUSG00000029420.14, intron 1 of 21) 60800 ENSMUSG00000029428.13 ENSMUSG00000029428 ENSMUST00000199813 Stx2 protein_coding Interval_87019 chr19 45572172 45572568 + 0 NA intron (ENSMUSG00000041035.9, intron 4 of 6) protein_coding-intron (ENSMUSG00000041035.9, intron 3 of 5) -2804 ENSMUSG00000041035.9 ENSMUSG00000041035 ENSMUST00000161373 Gm17018 protein_coding Interval_91747 chr2 49108783 49109003 + 0 NA intron (ENSMUSG00000036792.12, intron 4 of 4) protein_coding-intron (ENSMUSG00000036792.12, intron 4 of 10) -76125 ENSMUSG00000080937.1 ENSMUSG00000080937 ENSMUST00000118659 Gm13510 processed_pseudogene Interval_152163 chr7 130296945 130297133 + 0 NA intron (ENSMUSG00000030849.18, intron 2 of 6) protein_coding-intron (ENSMUSG00000030849.18, intron 2 of 6) -30784 ENSMUSG00000030849.18 ENSMUSG00000030849 ENSMUST00000208844 Fgfr2 protein_coding Interval_163713 chr9 24802226 24802439 + 0 NA intron (ENSMUSG00000111275.1, intron 2 of 2) lincRNA-intron (ENSMUSG00000111275.1, intron 2 of 2) 25013 ENSMUSG00000111507.1 ENSMUSG00000111507 ENSMUST00000214455 Amd-ps6 processed_pseudogene Interval_85483 chr19 27380187 27380470 + 0 NA Intergenic Intergenic 14256 ENSMUSG00000117705.1 ENSMUSG00000117705 ENSMUST00000235697 Gm50113 processed_pseudogene Interval_97449 chr2 136678435 136680575 + 0 NA promoter-TSS (ENSMUSG00000103066.1) TEC-promoter-TSS (ENSMUSG00000103066.1) -456 ENSMUSG00000103066.1 ENSMUSG00000103066 ENSMUST00000193814 Gm36967 TEC Interval_24316 chr11 32320541 32321691 + 0 NA Intergenic Intergenic 21047 ENSMUSG00000020295.1 ENSMUSG00000020295 ENSMUST00000020535 Hbq1a protein_coding Interval_161045 chr8 117121392 117122563 + 0 NA intron (ENSMUSG00000031845.15, intron 7 of 11) protein_coding-intron (ENSMUSG00000031845.15, intron 7 of 10) -3358 ENSMUSG00000093446.1 ENSMUSG00000093446 ENSMUST00000176943 Gm20694 processed_pseudogene Interval_96846 chr2 128872034 128872820 + 0 NA intron (ENSMUSG00000027386.9, intron 2 of 8) protein_coding-intron (ENSMUSG00000027386.9, intron 1 of 7) 9446 ENSMUSG00000027386.9 ENSMUSG00000027386 ENSMUST00000028864 Fbln7 protein_coding Interval_140330 chr6 116628404 116629477 + 0 NA promoter-TSS (ENSMUSG00000059878.12) protein_coding-promoter-TSS (ENSMUSG00000059878.12) -1282 ENSMUSG00000107428.1 ENSMUSG00000107428 ENSMUST00000204559 Gm44154 TEC Interval_92392 chr2 59448826 59449183 + 0 NA Intergenic Intergenic -35665 ENSMUSG00000026989.5 ENSMUSG00000026989 ENSMUST00000144415 Dapl1 protein_coding Interval_114045 chr4 62727704 62728477 + 0 NA promoter-TSS (ENSMUSG00000086139.1) lincRNA-promoter-TSS (ENSMUSG00000086139.1) -553 ENSMUSG00000086139.1 ENSMUSG00000086139 ENSMUST00000143618 Gm11211 lincRNA Interval_34439 chr12 4171403 4173970 + 0 NA intron (ENSMUSG00000020654.15, intron 1 of 2) protein_coding-intron (ENSMUSG00000020654.15, intron 1 of 20) 39583 ENSMUSG00000020654.15 ENSMUSG00000020654 ENSMUST00000127110 Adcy3 protein_coding Interval_3277 chr1 55447541 55448118 + 0 NA intron (ENSMUSG00000038349.10, intron 1 of 5) protein_coding-intron (ENSMUSG00000038349.10, intron 1 of 5) -2805 ENSMUSG00000100309.1 ENSMUSG00000100309 ENSMUST00000186507 Gm6644 processed_pseudogene Interval_15856 chr10 58445871 58447519 + 0 NA promoter-TSS (ENSMUSG00000003226.7) protein_coding-promoter-TSS (ENSMUSG00000003226.7) -500 ENSMUSG00000003226.7 ENSMUSG00000003226 ENSMUST00000220131 Ranbp2 protein_coding Interval_11531 chr1 182500411 182501035 + 0 NA intron (ENSMUSG00000026509.15, intron 2 of 20) protein_coding-intron (ENSMUSG00000026509.15, intron 2 of 20) 6567 ENSMUSG00000104415.1 ENSMUSG00000104415 ENSMUST00000192742 Gm37069 TEC Interval_83660 chr19 3546335 3546703 + 0 NA intron (ENSMUSG00000024908.15, intron 1 of 3) protein_coding-intron (ENSMUSG00000024908.15, intron 1 of 22) 19415 ENSMUSG00000114302.1 ENSMUSG00000114302 ENSMUST00000223977 Gm48683 antisense Interval_137061 chr6 67060240 67060436 + 0 NA intron (ENSMUSG00000087231.7, intron 2 of 6) processed_transcript-intron (ENSMUSG00000087231.7, intron 1 of 6) -16422 ENSMUSG00000087231.7 ENSMUSG00000087231 ENSMUST00000204847 E230016M11Rik processed_transcript Interval_66177 chr16 32143967 32144752 + 0 NA TTS (ENSMUSG00000052384.14) protein_coding-TTS (ENSMUSG00000052384.14) 21117 ENSMUSG00000052384.14 ENSMUSG00000052384 ENSMUST00000136809 Nrros protein_coding Interval_5332 chr1 87657717 87659780 + 0 NA intron (ENSMUSG00000026288.14, intron 2 of 26) protein_coding-intron (ENSMUSG00000026288.14, intron 2 of 26) -17491 ENSMUSG00000026288.14 ENSMUSG00000026288 ENSMUST00000163548 Inpp5d protein_coding Interval_24123 chr11 30572891 30573122 + 0 NA exon (ENSMUSG00000081887.1, exon 2 of 2) processed_pseudogene-exon (ENSMUSG00000081887.1, exon 2 of 2) 1448 ENSMUSG00000081887.1 ENSMUSG00000081887 ENSMUST00000121523 Gm12097 processed_pseudogene Interval_166941 chr9 64049150 64050692 + 0 NA Intergenic Intergenic 1425 ENSMUSG00000088988.1 ENSMUSG00000088988 ENSMUST00000158363 Gm25606 rRNA Interval_104143 chr3 59017162 59017457 + 0 NA intron (ENSMUSG00000056476.13, intron 1 of 43) protein_coding-intron (ENSMUSG00000056476.13, intron 1 of 14) 10822 ENSMUSG00000056476.13 ENSMUSG00000056476 ENSMUST00000197374 Med12l protein_coding Interval_130285 chr5 125418557 125419433 + 0 NA promoter-TSS (ENSMUSG00000029480.13) protein_coding-promoter-TSS (ENSMUSG00000029480.13) 7737 ENSMUSG00000029480.13 ENSMUSG00000029480 ENSMUST00000198746 Dhx37 protein_coding Interval_38284 chr12 76900689 76902471 + 0 NA intron (ENSMUSG00000033373.16, intron 4 of 5) protein_coding-intron (ENSMUSG00000033373.16, intron 7 of 11) 14522 ENSMUSG00000033373.16 ENSMUSG00000033373 ENSMUST00000130605 Fntb protein_coding Interval_107955 chr3 117404901 117405187 + 0 NA Intergenic Intergenic -44796 ENSMUSG00000044667.12 ENSMUSG00000044667 ENSMUST00000197743 Plppr4 protein_coding Interval_99811 chr2 165065881 165066449 + 0 NA intron (ENSMUSG00000017652.16, intron 5 of 7) protein_coding-intron (ENSMUSG00000017652.16, intron 5 of 8) 10461 ENSMUSG00000017652.16 ENSMUSG00000017652 ENSMUST00000153105 Cd40 protein_coding Interval_104046 chr3 57665709 57666230 + 0 NA TTS (ENSMUSG00000074591.8) protein_coding-TTS (ENSMUSG00000074591.8) -10390 ENSMUSG00000105389.1 ENSMUSG00000105389 ENSMUST00000198619 BB187690 TEC Interval_9924 chr1 164138398 164139110 + 0 NA intron (ENSMUSG00000026580.16, intron 9 of 15) protein_coding-intron (ENSMUSG00000026580.16, intron 9 of 15) 7612 ENSMUSG00000090081.1 ENSMUSG00000090081 ENSMUST00000161943 Gm16587 antisense Interval_32014 chr11 104451340 104451689 + 0 NA intron (ENSMUSG00000018412.16, intron 1 of 2) protein_coding-intron (ENSMUSG00000018412.16, intron 2 of 14) 16477 ENSMUSG00000018412.16 ENSMUSG00000018412 ENSMUST00000134266 Kansl1 protein_coding Interval_98128 chr2 148537183 148537451 + 0 NA Intergenic Intergenic 68427 ENSMUSG00000087678.1 ENSMUSG00000087678 ENSMUST00000129067 Gm14120 lincRNA Interval_37923 chr12 73072404 73072674 + 0 NA Intergenic Intergenic -29724 ENSMUSG00000051367.8 ENSMUSG00000051367 ENSMUST00000175677 Six1 protein_coding Interval_130232 chr5 125107244 125107902 + 0 NA intron (ENSMUSG00000029478.16, intron 5 of 47) protein_coding-intron (ENSMUSG00000029478.16, intron 4 of 45) 20732 ENSMUSG00000106663.1 ENSMUSG00000106663 ENSMUST00000198978 Gm42839 antisense Interval_131032 chr5 134659675 134660046 + 0 NA TTS (ENSMUSG00000029674.13) protein_coding-TTS (ENSMUSG00000029674.13) 4345 ENSMUSG00000029674.13 ENSMUSG00000029674 ENSMUST00000132027 Limk1 protein_coding Interval_61489 chr15 81946315 81946758 + 0 NA promoter-TSS (ENSMUSG00000042109.8) protein_coding-promoter-TSS (ENSMUSG00000042109.8) 9744 ENSMUSG00000042109.8 ENSMUSG00000042109 ENSMUST00000152678 Csdc2 protein_coding Interval_31751 chr11 102632669 102634399 + 0 NA Intergenic Intergenic -9118 ENSMUSG00000086283.7 ENSMUSG00000086283 ENSMUST00000147541 2810433D01Rik lincRNA Interval_80610 chr18 44586126 44586696 + 0 NA intron (ENSMUSG00000071856.10, intron 3 of 18) protein_coding-intron (ENSMUSG00000071856.10, intron 3 of 18) -75692 ENSMUSG00000097610.2 ENSMUSG00000097610 ENSMUST00000202771 A930012L18Rik antisense Interval_31441 chr11 100690455 100691073 + 0 NA exon (ENSMUSG00000085604.1, exon 4 of 6) antisense-exon (ENSMUSG00000085604.1, exon 4 of 6) 1691 ENSMUSG00000014198.15 ENSMUSG00000014198 ENSMUST00000153494 Zfp385c protein_coding Interval_71209 chr17 21173617 21173970 + 0 NA Intergenic Intergenic -1986 ENSMUSG00000100191.1 ENSMUSG00000100191 ENSMUST00000186171 Gm7740 processed_pseudogene Interval_132431 chr5 144884709 144885177 + 0 NA intron (ENSMUSG00000038780.14, intron 6 of 6) protein_coding-intron (ENSMUSG00000038780.14, intron 12 of 17) 11873 ENSMUSG00000098822.1 ENSMUSG00000098822 ENSMUST00000183852 Mir7039 miRNA Interval_173732 chrX 103259879 103260523 + 0 NA intron (ENSMUSG00000031325.15, intron 1 of 3) transcribed_unitary_pseudogene-intron (ENSMUSG00000031325.15, intron 1 of 3) 24076 ENSMUSG00000080886.1 ENSMUSG00000080886 ENSMUST00000121978 Gm14847 processed_pseudogene Interval_162137 chr8 125442326 125442608 + 0 NA intron (ENSMUSG00000001995.9, intron 17 of 22) protein_coding-intron (ENSMUSG00000001995.9, intron 15 of 20) 127341 ENSMUSG00000001995.9 ENSMUSG00000001995 ENSMUST00000212604 Sipa1l2 protein_coding Interval_92090 chr2 53126185 53126381 + 0 NA intron (ENSMUSG00000036053.17, intron 24 of 26) protein_coding-intron (ENSMUSG00000036053.17, intron 24 of 26) 64904 ENSMUSG00000061136.16 ENSMUSG00000061136 ENSMUST00000132031 Prpf40a protein_coding Interval_101631 chr3 8214779 8216344 + 0 NA exon (ENSMUSG00000103725.1, exon 1 of 1) processed_pseudogene-exon (ENSMUSG00000103725.1, exon 1 of 1) 1229 ENSMUSG00000103725.1 ENSMUSG00000103725 ENSMUST00000195642 Gm7103 processed_pseudogene Interval_108552 chr3 128566269 128566941 + 0 NA Intergenic Intergenic 26233 ENSMUSG00000065248.1 ENSMUSG00000065248 ENSMUST00000083314 Gm22293 snoRNA Interval_91802 chr2 49726829 49727637 + 0 NA intron (ENSMUSG00000026764.15, intron 4 of 6) protein_coding-intron (ENSMUSG00000026764.15, intron 12 of 25) -5378 ENSMUSG00000026764.15 ENSMUSG00000026764 ENSMUST00000132968 Kif5c protein_coding Interval_3924 chr1 64839118 64840071 + 0 NA intron (ENSMUSG00000051344.13, intron 6 of 8) protein_coding-intron (ENSMUSG00000051344.13, intron 6 of 7) -2830 ENSMUSG00000051344.13 ENSMUSG00000051344 ENSMUST00000134097 Plekhm3 protein_coding Interval_123192 chr5 30510748 30511131 + 0 NA intron (ENSMUSG00000053194.2, intron 3 of 6) protein_coding-intron (ENSMUSG00000053194.2, intron 3 of 6) 3745 ENSMUSG00000088327.1 ENSMUSG00000088327 ENSMUST00000157702 Gm25666 snRNA Interval_168008 chr9 75375967 75377539 + 0 NA promoter-TSS (ENSMUSG00000111495.1) processed_pseudogene-promoter-TSS (ENSMUSG00000111495.1) -805 ENSMUSG00000111495.1 ENSMUSG00000111495 ENSMUST00000215494 Gm5366 processed_pseudogene Interval_150534 chr7 112131516 112132373 + 0 NA intron (ENSMUSG00000030772.6, intron 4 of 7) protein_coding-intron (ENSMUSG00000030772.6, intron 4 of 7) 27113 ENSMUSG00000030772.6 ENSMUSG00000030772 ENSMUST00000033036 Dkk3 protein_coding Interval_129048 chr5 117091710 117093120 + 0 NA TTS (ENSMUSG00000066900.11) protein_coding-TTS (ENSMUSG00000066900.11) 11986 ENSMUSG00000066900.11 ENSMUSG00000066900 ENSMUST00000201287 Suds3 protein_coding Interval_22859 chr11 16810723 16810920 + 0 NA intron (ENSMUSG00000020122.16, intron 1 of 15) protein_coding-intron (ENSMUSG00000020122.16, intron 1 of 27) 19881 ENSMUSG00000085091.1 ENSMUSG00000085091 ENSMUST00000150329 Egfros antisense Interval_134102 chr6 20099030 20099212 + 0 NA Intergenic Intergenic 311068 ENSMUSG00000107067.1 ENSMUSG00000107067 ENSMUST00000201774 Gm42581 processed_pseudogene Interval_33291 chr11 115733953 115734838 + 0 NA Intergenic Intergenic 4929 ENSMUSG00000084130.1 ENSMUSG00000084130 ENSMUST00000120031 Gm11704 processed_pseudogene Interval_30358 chr11 93838227 93838672 + 0 NA Intergenic Intergenic 37694 ENSMUSG00000054079.12 ENSMUSG00000054079 ENSMUST00000134807 Utp18 protein_coding Interval_140854 chr6 122355705 122356540 + 0 NA Intergenic Intergenic -16510 ENSMUSG00000040669.14 ENSMUSG00000040669 ENSMUST00000161210 Phc1 protein_coding Interval_139640 chr6 104388288 104389070 + 0 NA Intergenic Intergenic 88553 ENSMUSG00000107074.1 ENSMUSG00000107074 ENSMUST00000200897 Gm18100 processed_pseudogene Interval_90786 chr2 32606295 32609053 + 0 NA promoter-TSS (ENSMUSG00000026811.18) protein_coding-promoter-TSS (ENSMUSG00000026811.18) 634 ENSMUSG00000026811.18 ENSMUSG00000026811 ENSMUST00000128811 St6galnac6 protein_coding Interval_141410 chr6 128084562 128084757 + 0 NA intron (ENSMUSG00000030352.15, intron 1 of 6) protein_coding-intron (ENSMUSG00000030352.15, intron 1 of 8) 10367 ENSMUSG00000076327.1 ENSMUSG00000076327 ENSMUST00000102372 Gm26338 miRNA Interval_172731 chrX 48019526 48020253 + 0 NA Intergenic Intergenic 14964 ENSMUSG00000037010.7 ENSMUSG00000037010 ENSMUST00000039026 Apln protein_coding Interval_126632 chr5 91303486 91304125 + 0 NA Intergenic Intergenic -20384 ENSMUSG00000107198.1 ENSMUSG00000107198 ENSMUST00000200707 Gm19619 lincRNA Interval_56768 chr14 121945953 121947553 + 0 NA intron (ENSMUSG00000041765.6, intron 1 of 4) protein_coding-intron (ENSMUSG00000041765.6, intron 4 of 8) 439 ENSMUSG00000041765.6 ENSMUSG00000041765 ENSMUST00000227936 Ubac2 protein_coding Interval_38828 chr12 83053809 83054074 + 0 NA intron (ENSMUSG00000021219.16, intron 6 of 16) protein_coding-intron (ENSMUSG00000021219.16, intron 5 of 14) 44933 ENSMUSG00000102029.1 ENSMUSG00000102029 ENSMUST00000187556 Gm29530 antisense Interval_67662 chr16 55807575 55807799 + 0 NA Intergenic Intergenic 10828 ENSMUSG00000035356.17 ENSMUSG00000035356 ENSMUST00000139373 Nfkbiz protein_coding Interval_62927 chr15 97963450 97964965 + 0 NA promoter-TSS (ENSMUSG00000052369.8) protein_coding-promoter-TSS (ENSMUSG00000052369.8) -49 ENSMUSG00000052369.8 ENSMUSG00000052369 ENSMUST00000231079 Tmem106c protein_coding Interval_96243 chr2 120891226 120891756 + 0 NA intron (ENSMUSG00000027272.5, intron 36 of 46) protein_coding-intron (ENSMUSG00000027272.5, intron 36 of 46) 25163 ENSMUSG00000087519.8 ENSMUSG00000087519 ENSMUST00000171483 AV039307 processed_transcript Interval_198 KB469741.2 411398 411795 + 0 NA NA NA NA NA Interval_127863 chr5 108330838 108331870 + 0 NA intron (ENSMUSG00000029263.15, intron 6 of 12) protein_coding-intron (ENSMUSG00000029263.15, intron 6 of 12) -18605 ENSMUSG00000106103.1 ENSMUSG00000106103 ENSMUST00000199082 Gm43081 TEC Interval_42462 chr13 13795478 13795807 + 0 NA intron (ENSMUSG00000021303.14, intron 1 of 3) protein_coding-intron (ENSMUSG00000021303.14, intron 1 of 3) 6298 ENSMUSG00000087898.1 ENSMUSG00000087898 ENSMUST00000157273 Gm25271 misc_RNA Interval_80324 chr18 39226338 39226668 + 0 NA promoter-TSS (ENSMUSG00000036452.18) protein_coding-promoter-TSS (ENSMUSG00000036452.18) -64932 ENSMUSG00000036452.18 ENSMUSG00000036452 ENSMUST00000133247 Arhgap26 protein_coding Interval_82610 chr18 75415537 75416173 + 0 NA Intergenic Intergenic 46865 ENSMUSG00000025880.11 ENSMUSG00000025880 ENSMUST00000172718 Smad7 protein_coding Interval_117985 chr4 127465380 127465801 + 0 NA Intergenic Intergenic -9312 ENSMUSG00000087470.2 ENSMUSG00000087470 ENSMUST00000146587 A630031M04Rik lincRNA Interval_11393 chr1 181552291 181552499 + 0 NA Intergenic Intergenic -29558 ENSMUSG00000047369.17 ENSMUSG00000047369 ENSMUST00000195808 Dnah14 protein_coding Interval_170722 chr9 110341505 110341836 + 0 NA intron (ENSMUSG00000032485.14, intron 1 of 3) protein_coding-intron (ENSMUSG00000032485.14, intron 1 of 22) -11106 ENSMUSG00000106123.1 ENSMUSG00000106123 ENSMUST00000196065 Gm42638 TEC Interval_19677 chr10 107752021 107753104 + 0 NA Intergenic Intergenic -32535 ENSMUSG00000035916.8 ENSMUSG00000035916 ENSMUST00000218399 Ptprq protein_coding Interval_96543 chr2 125560198 125561118 + 0 NA Intergenic Intergenic -54586 ENSMUSG00000027204.13 ENSMUSG00000027204 ENSMUST00000148272 Fbn1 protein_coding Interval_74159 chr17 46844402 46845437 + 0 NA intron (ENSMUSG00000036568.7, intron 1 of 4) protein_coding-intron (ENSMUSG00000036568.7, intron 1 of 4) -12605 ENSMUSG00000036568.7 ENSMUSG00000036568 ENSMUST00000233455 Bicral protein_coding Interval_119334 chr4 136924627 136925021 + 0 NA Intergenic Intergenic -26021 ENSMUSG00000036887.5 ENSMUSG00000036887 ENSMUST00000046285 C1qa protein_coding Interval_48722 chr13 102258086 102258296 + 0 NA Intergenic Intergenic 29522 ENSMUSG00000084733.1 ENSMUSG00000084733 ENSMUST00000122784 Gm25808 misc_RNA Interval_118971 chr4 134784628 134785321 + 0 NA Intergenic Intergenic 26239 ENSMUSG00000028826.14 ENSMUSG00000028826 ENSMUST00000136113 Maco1 protein_coding Interval_48882 chr13 104281325 104281970 + 0 NA Intergenic Intergenic -6188 ENSMUSG00000046169.10 ENSMUSG00000046169 ENSMUST00000224504 Adamts6 protein_coding Interval_92358 chr2 59230805 59232481 + 0 NA intron (ENSMUSG00000026991.20, intron 1 of 20) protein_coding-intron (ENSMUSG00000026991.20, intron 2 of 21) 69716 ENSMUSG00000026991.20 ENSMUSG00000026991 ENSMUST00000124127 Pkp4 protein_coding Interval_164488 chr9 37434345 37435132 + 0 NA Intergenic Intergenic -12135 ENSMUSG00000032128.15 ENSMUSG00000032128 ENSMUST00000167216 Robo3 protein_coding Interval_10037 chr1 165274724 165275431 + 0 NA Intergenic Intergenic -20712 ENSMUSG00000040836.15 ENSMUSG00000040836 ENSMUST00000111450 Gpr161 protein_coding Interval_110518 chr4 3515150 3515334 + 0 NA intron (ENSMUSG00000081660.1, intron 1 of 8) unprocessed_pseudogene-intron (ENSMUSG00000081660.1, intron 1 of 8) 1273 ENSMUSG00000081660.1 ENSMUSG00000081660 ENSMUST00000121996 Gm11787 unprocessed_pseudogene Interval_129889 chr5 122927848 122928717 + 0 NA intron (ENSMUSG00000029475.17, intron 10 of 12) protein_coding-intron (ENSMUSG00000029475.17, intron 11 of 22) -6734 ENSMUSG00000029475.17 ENSMUSG00000029475 ENSMUST00000150543 Kdm2b protein_coding Interval_121311 chr4 154907881 154908282 + 0 NA Intergenic Intergenic -8946 ENSMUSG00000029059.9 ENSMUSG00000029059 ENSMUST00000132281 Prxl2b protein_coding Interval_37749 chr12 71698955 71699190 + 0 NA intron (ENSMUSG00000114028.1, intron 3 of 5) lincRNA-intron (ENSMUSG00000114028.1, intron 3 of 5) -25580 ENSMUSG00000084463.1 ENSMUSG00000084463 ENSMUST00000122514 Gm22959 misc_RNA Interval_52336 chr14 45211843 45212038 + 0 NA exon (ENSMUSG00000082463.1, exon 1 of 1) processed_pseudogene-exon (ENSMUSG00000082463.1, exon 1 of 1) 417 ENSMUSG00000082463.1 ENSMUSG00000082463 ENSMUST00000118407 Gm15765 processed_pseudogene Interval_114043 chr4 62699268 62700332 + 0 NA promoter-TSS (ENSMUSG00000059810.18) protein_coding-promoter-TSS (ENSMUSG00000059810.18) -6181 ENSMUSG00000085223.1 ENSMUSG00000085223 ENSMUST00000150203 Gm11210 lincRNA Interval_3081 chr1 52964403 52965178 + 0 NA intron (ENSMUSG00000043629.12, intron 1 of 1) protein_coding-intron (ENSMUSG00000043629.12, intron 1 of 1) 55389 ENSMUSG00000043629.12 ENSMUSG00000043629 ENSMUST00000190726 1700019D03Rik protein_coding Interval_116526 chr4 115038158 115038478 + 0 NA intron (ENSMUSG00000028718.16, intron 15 of 17) protein_coding-intron (ENSMUSG00000028718.16, intron 14 of 16) -21190 ENSMUSG00000028717.12 ENSMUSG00000028717 ENSMUST00000162489 Tal1 protein_coding Interval_68487 chr16 78110114 78110385 + 0 NA Intergenic Intergenic -6851 ENSMUSG00000116609.1 ENSMUSG00000116609 ENSMUST00000231333 Gm5675 processed_pseudogene Interval_36232 chr12 40037065 40038454 + 0 NA promoter-TSS (ENSMUSG00000086315.1) antisense-promoter-TSS (ENSMUSG00000086315.1) -330 ENSMUSG00000047446.18 ENSMUSG00000047446 ENSMUST00000101472 Arl4a protein_coding Interval_160974 chr8 116605851 116607034 + 0 NA intron (ENSMUSG00000031758.10, intron 2 of 6) protein_coding-intron (ENSMUSG00000031758.10, intron 2 of 6) 101468 ENSMUSG00000034467.7 ENSMUSG00000034467 ENSMUST00000078170 Dynlrb2 protein_coding Interval_142007 chr6 136518397 136519395 + 0 NA promoter-TSS (ENSMUSG00000030213.12) protein_coding-promoter-TSS (ENSMUSG00000030213.12) 135 ENSMUSG00000107702.1 ENSMUSG00000107702 ENSMUST00000204157 Gm44140 bidirectional_promoter_lncRNA Interval_30339 chr11 93698655 93699050 + 0 NA Intergenic Intergenic 3770 ENSMUSG00000080872.1 ENSMUSG00000080872 ENSMUST00000122414 Gm11506 processed_pseudogene Interval_72581 chr17 30818320 30819973 + 0 NA exon (ENSMUSG00000033826.10, exon 85 of 93) protein_coding-exon (ENSMUSG00000033826.10, exon 85 of 93) -37017 ENSMUSG00000094785.1 ENSMUSG00000094785 ENSMUST00000083205 Gm24661 snRNA Interval_115314 chr4 95966805 95967835 + 0 NA promoter-TSS (ENSMUSG00000028572.13) protein_coding-promoter-TSS (ENSMUSG00000028572.13) -285 ENSMUSG00000044125.6 ENSMUSG00000044125 ENSMUST00000143332 9530080O11Rik processed_transcript Interval_141491 chr6 128599783 128599974 + 0 NA Intergenic Intergenic -11853 ENSMUSG00000107503.1 ENSMUSG00000107503 ENSMUST00000203539 Gm44009 lincRNA Interval_109770 chr3 146793664 146793899 + 0 NA intron (ENSMUSG00000005034.15, intron 1 of 9) protein_coding-intron (ENSMUSG00000005034.15, intron 1 of 9) -9382 ENSMUSG00000104946.1 ENSMUSG00000104946 ENSMUST00000198392 Gm19104 processed_pseudogene Interval_103153 chr3 36000023 36001110 + 0 NA promoter-TSS (ENSMUSG00000027709.9) protein_coding-promoter-TSS (ENSMUSG00000027709.9) 653 ENSMUSG00000086392.9 ENSMUSG00000086392 ENSMUST00000124469 Mccc1os antisense Interval_33046 chr11 113863604 113863875 + 0 NA intron (ENSMUSG00000041592.16, intron 12 of 18) protein_coding-intron (ENSMUSG00000041592.16, intron 12 of 44) -53316 ENSMUSG00000041592.16 ENSMUSG00000041592 ENSMUST00000144301 Sdk2 protein_coding Interval_117555 chr4 124656807 124659459 + 0 NA promoter-TSS (ENSMUSG00000098760.1) antisense-promoter-TSS (ENSMUSG00000098760.1) -964 ENSMUSG00000098760.1 ENSMUSG00000098760 ENSMUST00000184062 Gm2164 antisense Interval_95654 chr2 113537767 113539857 + 0 NA intron (ENSMUSG00000044042.19, intron 6 of 17) protein_coding-intron (ENSMUSG00000044042.19, intron 5 of 16) -34778 ENSMUSG00000087106.1 ENSMUSG00000087106 ENSMUST00000133815 Gm13964 antisense Interval_159189 chr8 91488205 91489737 + 0 NA intron (ENSMUSG00000055932.15, intron 4 of 5) protein_coding-intron (ENSMUSG00000055932.15, intron 7 of 8) -4048 ENSMUSG00000109642.1 ENSMUSG00000109642 ENSMUST00000211048 Gm45289 TEC Interval_49037 chr13 107121509 107122015 + 0 NA Intergenic Intergenic 58069 ENSMUSG00000114311.1 ENSMUSG00000114311 ENSMUST00000224729 Gm31452 lincRNA Interval_101632 chr3 8276063 8276941 + 0 NA Intergenic Intergenic -51029 ENSMUSG00000103921.1 ENSMUSG00000103921 ENSMUST00000195307 Gm5841 processed_pseudogene Interval_124445 chr5 47686626 47687485 + 0 NA Intergenic Intergenic -12790 ENSMUSG00000105616.1 ENSMUSG00000105616 ENSMUST00000198805 Gm3010 processed_pseudogene Interval_61005 chr15 78712406 78713405 + 0 NA intron (ENSMUSG00000043460.7, intron 1 of 1) protein_coding-intron (ENSMUSG00000043460.7, intron 1 of 1) -37679 ENSMUSG00000043460.7 ENSMUSG00000043460 ENSMUST00000229550 Elfn2 protein_coding Interval_152324 chr7 131774046 131774890 + 0 NA intron (ENSMUSG00000030849.18, intron 2 of 6) protein_coding-intron (ENSMUSG00000030849.18, intron 2 of 6) 12111 ENSMUSG00000108839.1 ENSMUSG00000108839 ENSMUST00000207793 Gm44547 TEC Interval_112671 chr4 43971954 43972695 + 0 NA intron (ENSMUSG00000028480.14, intron 2 of 2) protein_coding-intron (ENSMUSG00000028480.14, intron 4 of 4) -11159 ENSMUSG00000070999.2 ENSMUSG00000070999 ENSMUST00000095107 Ccin protein_coding Interval_44846 chr13 49047176 49047785 + 0 NA intron (ENSMUSG00000037989.15, intron 24 of 27) protein_coding-intron (ENSMUSG00000037989.15, intron 24 of 27) -79463 ENSMUSG00000038014.7 ENSMUSG00000038014 ENSMUST00000060805 Fam120a protein_coding Interval_7399 chr1 131003292 131003612 + 0 NA Intergenic Intergenic -16393 ENSMUSG00000016529.5 ENSMUSG00000016529 ENSMUST00000016673 Il10 protein_coding Interval_123350 chr5 31623198 31624247 + 0 NA TTS (ENSMUSG00000029136.9) protein_coding-TTS (ENSMUSG00000029136.9) 9750 ENSMUSG00000105617.4 ENSMUSG00000105617 ENSMUST00000202033 Gm43809 processed_transcript Interval_149318 chr7 97414532 97414768 + 0 NA intron (ENSMUSG00000035686.8, intron 1 of 1) protein_coding-intron (ENSMUSG00000035686.8, intron 1 of 1) 2869 ENSMUSG00000035686.8 ENSMUSG00000035686 ENSMUST00000206613 Thrsp protein_coding Interval_3102 chr1 53341965 53342343 + 0 NA promoter-TSS (ENSMUSG00000101838.6) transcribed_unprocessed_pseudogene-promoter-TSS (ENSMUSG00000101838.6) -8811 ENSMUSG00000101838.6 ENSMUSG00000101838 ENSMUST00000186588 Gm18800 transcribed_unprocessed_pseudogene Interval_88932 chr2 13113073 13113281 + 0 NA intron (ENSMUSG00000026727.10, intron 2 of 2) protein_coding-intron (ENSMUSG00000026727.10, intron 8 of 8) 5258 ENSMUSG00000103360.1 ENSMUSG00000103360 ENSMUST00000194601 Gm38156 TEC Interval_19954 chr10 111490500 111490759 + 0 NA promoter-TSS (ENSMUSG00000058799.16) protein_coding-promoter-TSS (ENSMUSG00000058799.16) 9136 ENSMUSG00000087819.1 ENSMUSG00000087819 ENSMUST00000157194 Gm25117 snoRNA Interval_124652 chr5 52852438 52853377 + 0 NA intron (ENSMUSG00000029176.13, intron 16 of 28) protein_coding-intron (ENSMUSG00000029176.13, intron 15 of 27) -2440 ENSMUSG00000029176.13 ENSMUSG00000029176 ENSMUST00000138629 Anapc4 protein_coding Interval_100575 chr2 170205221 170208105 + 0 NA Intergenic Intergenic -58560 ENSMUSG00000052056.14 ENSMUSG00000052056 ENSMUST00000149318 Zfp217 protein_coding Interval_66485 chr16 34183178 34183436 + 0 NA intron (ENSMUSG00000061751.16, intron 24 of 30) protein_coding-intron (ENSMUSG00000061751.16, intron 27 of 59) -87279 ENSMUSG00000061751.16 ENSMUSG00000061751 ENSMUST00000132569 Kalrn protein_coding Interval_38992 chr12 84331385 84332817 + 0 NA promoter-TSS (ENSMUSG00000042472.11) protein_coding-promoter-TSS (ENSMUSG00000042472.11) 14983 ENSMUSG00000042472.11 ENSMUSG00000042472 ENSMUST00000220832 Zfp410 protein_coding Interval_87461 chr19 52275248 52275534 + 0 NA Intergenic Intergenic 11094 ENSMUSG00000035804.5 ENSMUSG00000035804 ENSMUST00000039652 Ins1 protein_coding Interval_110931 chr4 10459179 10460638 + 0 NA Intergenic Intergenic -20165 ENSMUSG00000084215.3 ENSMUSG00000084215 ENSMUST00000119515 Gm11814 processed_pseudogene Interval_2956 chr1 51622414 51625956 + 0 NA Intergenic Intergenic 73715 ENSMUSG00000101741.1 ENSMUSG00000101741 ENSMUST00000186769 Gm28055 lincRNA Interval_68822 chr16 87365439 87366145 + 0 NA TTS (ENSMUSG00000044442.11) protein_coding-TTS (ENSMUSG00000044442.11) 11549 ENSMUSG00000044442.11 ENSMUSG00000044442 ENSMUST00000118115 N6amt1 protein_coding Interval_6488 chr1 111885032 111885695 + 0 NA Intergenic Intergenic -4055 ENSMUSG00000101875.1 ENSMUSG00000101875 ENSMUST00000077111 Gm6028 processed_pseudogene Interval_147433 chr7 67127043 67127328 + 0 NA intron (ENSMUSG00000058145.16, intron 20 of 21) protein_coding-intron (ENSMUSG00000058145.16, intron 21 of 22) 44342 ENSMUSG00000108833.1 ENSMUSG00000108833 ENSMUST00000207587 Gm17909 processed_pseudogene Interval_91838 chr2 50111490 50111856 + 0 NA intron (ENSMUSG00000050447.15, intron 1 of 4) protein_coding-intron (ENSMUSG00000050447.15, intron 1 of 5) -16696 ENSMUSG00000050447.15 ENSMUSG00000050447 ENSMUST00000126337 Lypd6 protein_coding Interval_77457 chr17 88975929 88976678 + 0 NA Intergenic Intergenic -119681 ENSMUSG00000117566.1 ENSMUSG00000117566 ENSMUST00000234561 Gm9407 processed_pseudogene Interval_104474 chr3 66220466 66221742 + 0 NA exon (ENSMUSG00000027832.5, exon 1 of 1) protein_coding-exon (ENSMUSG00000027832.5, exon 1 of 1) 859 ENSMUSG00000027832.5 ENSMUSG00000027832 ENSMUST00000182521 Ptx3 protein_coding Interval_136888 chr6 63014943 63015540 + 0 NA Intergenic Intergenic 32931 ENSMUSG00000107708.1 ENSMUSG00000107708 ENSMUST00000203408 Gm19131 transcribed_unprocessed_pseudogene Interval_112557 chr4 43114013 43115210 + 0 NA promoter-TSS (ENSMUSG00000028456.18) protein_coding-promoter-TSS (ENSMUSG00000028456.18) 22017 ENSMUSG00000077552.1 ENSMUSG00000077552 ENSMUST00000104364 Gm23709 snoRNA Interval_132873 chr5 148444892 148445173 + 0 NA Intergenic Intergenic -11806 ENSMUSG00000106956.1 ENSMUSG00000106956 ENSMUST00000202977 Gm19617 unprocessed_pseudogene Interval_63835 chr16 3871894 3873007 + 0 NA promoter-TSS (ENSMUSG00000039789.7) protein_coding-promoter-TSS (ENSMUSG00000039789.7) -6626 ENSMUSG00000039789.7 ENSMUSG00000039789 ENSMUST00000130254 Zfp597 protein_coding Interval_106429 chr3 96158658 96159187 + 0 NA exon (ENSMUSG00000038495.14, exon 12 of 12) protein_coding-exon (ENSMUSG00000038495.14, exon 12 of 12) -11664 ENSMUSG00000045934.15 ENSMUSG00000045934 ENSMUST00000196004 Mtmr11 protein_coding Interval_73704 chr17 42891919 42892499 + 0 NA Intergenic Intergenic -61179 ENSMUSG00000061665.7 ENSMUSG00000061665 ENSMUST00000233626 Cd2ap protein_coding Interval_132555 chr5 146289339 146290637 + 0 NA exon (ENSMUSG00000029635.15, exon 2 of 2) protein_coding-exon (ENSMUSG00000029635.15, exon 2 of 2) 3812 ENSMUSG00000029635.15 ENSMUSG00000029635 ENSMUST00000160924 Cdk8 protein_coding Interval_35767 chr12 29115458 29116602 + 0 NA Intergenic Intergenic -9293 ENSMUSG00000113544.1 ENSMUSG00000113544 ENSMUST00000222186 4833405L11Rik lincRNA Interval_49891 chr13 117883319 117883551 + 0 NA intron (ENSMUSG00000021730.8, intron 4 of 7) protein_coding-intron (ENSMUSG00000021730.8, intron 4 of 7) -153179 ENSMUSG00000088155.1 ENSMUSG00000088155 ENSMUST00000157530 Gm26349 snoRNA Interval_73368 chr17 36812802 36813120 + 0 NA intron (ENSMUSG00000037130.4, intron 2 of 5) protein_coding-intron (ENSMUSG00000037130.4, intron 2 of 5) 790 ENSMUSG00000037130.4 ENSMUSG00000037130 ENSMUST00000041398 H2-M10.6 protein_coding Interval_138742 chr6 91575830 91576563 + 0 NA Intergenic Intergenic -18562 ENSMUSG00000108335.1 ENSMUSG00000108335 ENSMUST00000206407 Gm45215 processed_pseudogene Interval_67841 chr16 57641907 57643143 + 0 NA intron (ENSMUSG00000068196.5, intron 2 of 3) protein_coding-intron (ENSMUSG00000068196.5, intron 2 of 3) -35661 ENSMUSG00000022748.8 ENSMUSG00000022748 ENSMUST00000232413 Cmss1 protein_coding Interval_14627 chr10 37214715 37215324 + 0 NA Intergenic Intergenic 48729 ENSMUSG00000110799.1 ENSMUSG00000110799 ENSMUST00000217044 4930543K20Rik lincRNA Interval_129049 chr5 117094189 117094843 + 0 NA TTS (ENSMUSG00000066900.11) protein_coding-TTS (ENSMUSG00000066900.11) 9885 ENSMUSG00000066900.11 ENSMUSG00000066900 ENSMUST00000201287 Suds3 protein_coding Interval_45604 chr13 56196708 56197945 + 0 NA Intergenic Intergenic 5611 ENSMUSG00000114341.1 ENSMUSG00000114341 ENSMUST00000225940 Gm47104 processed_pseudogene Interval_23862 chr11 27219192 27220189 + 0 NA Intergenic Intergenic 99288 ENSMUSG00000088438.1 ENSMUSG00000088438 ENSMUST00000157813 Gm25387 snoRNA Interval_54808 chr14 75309546 75309862 + 0 NA exon (ENSMUSG00000022000.11, exon 7 of 19) protein_coding-exon (ENSMUSG00000022000.11, exon 7 of 19) -28368 ENSMUSG00000022000.11 ENSMUSG00000022000 ENSMUST00000228470 Zc3h13 protein_coding Interval_98868 chr2 155668383 155669492 + 0 NA promoter-TSS (ENSMUSG00000038324.13) protein_coding-promoter-TSS (ENSMUSG00000038324.13) -15913 ENSMUSG00000088695.1 ENSMUSG00000088695 ENSMUST00000158070 Gm22334 snoRNA Interval_11485 chr1 182143014 182143578 + 0 NA Intergenic Intergenic 12597 ENSMUSG00000026511.7 ENSMUSG00000026511 ENSMUST00000193005 Srp9 protein_coding Interval_41127 chr12 111353181 111354105 + 0 NA intron (ENSMUSG00000021279.5, intron 2 of 4) protein_coding-intron (ENSMUSG00000021279.5, intron 1 of 36) -39106 ENSMUSG00000021279.5 ENSMUSG00000021279 ENSMUST00000222196 Cdc42bpb protein_coding Interval_120827 chr4 150878918 150881220 + 0 NA Intergenic Intergenic 24996 ENSMUSG00000028967.10 ENSMUSG00000028967 ENSMUST00000030811 Errfi1 protein_coding Interval_82841 chr18 77372913 77373284 + 0 NA intron (ENSMUSG00000032818.16, intron 20 of 39) protein_coding-intron (ENSMUSG00000032818.16, intron 17 of 20) -74420 ENSMUSG00000118108.1 ENSMUSG00000118108 ENSMUST00000238018 Gm50284 antisense Interval_160347 chr8 108645347 108647824 + 0 NA intron (ENSMUSG00000038872.10, intron 5 of 15) protein_coding-intron (ENSMUSG00000038872.10, intron 5 of 15) -61990 ENSMUSG00000110613.1 ENSMUSG00000110613 ENSMUST00000211953 Lncbate1 lincRNA Interval_16055 chr10 60384690 60384910 + 0 NA intron (ENSMUSG00000012819.15, intron 4 of 8) protein_coding-intron (ENSMUSG00000012819.15, intron 30 of 66) -15104 ENSMUSG00000090439.3 ENSMUSG00000090439 ENSMUST00000218360 Gm17455 protein_coding Interval_8546 chr1 141334583 141335123 + 0 NA Intergenic Intergenic 20498 ENSMUSG00000089418.2 ENSMUSG00000089418 ENSMUST00000158793 Gm22016 misc_RNA Interval_103721 chr3 52022567 52023039 + 0 NA intron (ENSMUSG00000061143.15, intron 1 of 4) protein_coding-intron (ENSMUSG00000061143.15, intron 1 of 4) -18778 ENSMUSG00000102423.1 ENSMUSG00000102423 ENSMUST00000192845 Gm37465 TEC Interval_69495 chr16 93870600 93871703 + 0 NA TTS (ENSMUSG00000039456.10) protein_coding-TTS (ENSMUSG00000039456.10) 10638 ENSMUSG00000039456.10 ENSMUSG00000039456 ENSMUST00000232639 Morc3 protein_coding Interval_86762 chr19 43689220 43690213 + 0 NA promoter-TSS (ENSMUSG00000025192.13) protein_coding-promoter-TSS (ENSMUSG00000025192.13) -93 ENSMUSG00000025192.13 ENSMUSG00000025192 ENSMUST00000131293 Entpd7 protein_coding Interval_68236 chr16 70224120 70224332 + 0 NA Intergenic Intergenic 34264 ENSMUSG00000116794.1 ENSMUSG00000116794 ENSMUST00000231873 Gm49656 processed_pseudogene Interval_152895 chr7 139545026 139545449 + 0 NA intron (ENSMUSG00000025477.14, intron 3 of 6) protein_coding-intron (ENSMUSG00000025477.14, intron 9 of 15) 28578 ENSMUSG00000025477.14 ENSMUSG00000025477 ENSMUST00000152475 Inpp5a protein_coding Interval_76472 chr17 80437859 80438183 + 0 NA intron (ENSMUSG00000024241.7, intron 8 of 19) protein_coding-intron (ENSMUSG00000024241.7, intron 8 of 21) 42432 ENSMUSG00000024241.7 ENSMUSG00000024241 ENSMUST00000234841 Sos1 protein_coding Interval_101833 chr3 9827337 9827672 + 0 NA TTS (ENSMUSG00000027508.15) protein_coding-TTS (ENSMUSG00000027508.15) 2224 ENSMUSG00000088004.1 ENSMUSG00000088004 ENSMUST00000157379 Gm24786 rRNA Interval_134628 chr6 30040785 30041387 + 0 NA Intergenic Intergenic -48809 ENSMUSG00000058440.14 ENSMUSG00000058440 ENSMUST00000132866 Nrf1 protein_coding Interval_173759 chrX 103486236 103486518 + 0 NA promoter-TSS (ENSMUSG00000083502.1) processed_pseudogene-promoter-TSS (ENSMUSG00000083502.1) -557 ENSMUSG00000083502.1 ENSMUSG00000083502 ENSMUST00000119451 Gm14861 processed_pseudogene Interval_46162 chr13 62121306 62122683 + 0 NA intron (ENSMUSG00000114036.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000114036.1, intron 1 of 1) -3735 ENSMUSG00000113504.1 ENSMUSG00000113504 ENSMUST00000221048 Selenok-ps5 processed_pseudogene Interval_48943 chr13 105266866 105267205 + 0 NA intron (ENSMUSG00000021720.11, intron 2 of 7) protein_coding-intron (ENSMUSG00000021720.11, intron 1 of 6) 27367 ENSMUSG00000021720.11 ENSMUSG00000021720 ENSMUST00000224749 Rnf180 protein_coding Interval_149934 chr7 102842543 102843405 + 0 NA Intergenic Intergenic 15781 ENSMUSG00000060888.4 ENSMUSG00000060888 ENSMUST00000209952 Olfr566 protein_coding Interval_4070 chr1 67265948 67266233 + 0 NA intron (ENSMUSG00000086204.1, intron 3 of 4) lincRNA-intron (ENSMUSG00000086204.1, intron 3 of 4) 8866 ENSMUSG00000077745.1 ENSMUSG00000077745 ENSMUST00000104557 Gm26342 snoRNA Interval_118831 chr4 133936719 133937122 + 0 NA Intergenic Intergenic 30971 ENSMUSG00000003038.15 ENSMUSG00000003038 ENSMUST00000136859 Hmgn2 protein_coding Interval_145313 chr7 32277716 32277964 + 0 NA Intergenic Intergenic 49405 ENSMUSG00000097982.1 ENSMUSG00000097982 ENSMUST00000183195 Scgb2b12 protein_coding Interval_106453 chr3 96435320 96436595 + 0 NA intron (ENSMUSG00000046317.14, intron 3 of 4) protein_coding-intron (ENSMUSG00000046317.14, intron 3 of 4) 13224 ENSMUSG00000095513.1 ENSMUSG00000095513 ENSMUST00000083374 Gm24136 snRNA Interval_148026 chr7 78471576 78471918 + 0 NA intron (ENSMUSG00000059146.12, intron 4 of 18) protein_coding-intron (ENSMUSG00000059146.12, intron 4 of 16) 103485 ENSMUSG00000108390.1 ENSMUSG00000108390 ENSMUST00000206774 Gm39038 sense_intronic Interval_25648 chr11 50397380 50399073 + 0 NA intron (ENSMUSG00000020375.9, intron 13 of 17) protein_coding-intron (ENSMUSG00000020375.9, intron 13 of 17) 15047 ENSMUSG00000007850.16 ENSMUSG00000007850 ENSMUST00000151537 Hnrnph1 protein_coding Interval_45018 chr13 51491462 51492390 + 0 NA intron (ENSMUSG00000021448.8, intron 2 of 11) protein_coding-intron (ENSMUSG00000021448.8, intron 2 of 11) -73240 ENSMUSG00000112959.1 ENSMUSG00000112959 ENSMUST00000220470 Gm32834 lincRNA Interval_58243 chr15 31315429 31316282 + 0 NA intron (ENSMUSG00000022237.17, intron 1 of 2) protein_coding-intron (ENSMUSG00000022237.17, intron 1 of 2) -7661 ENSMUSG00000022237.17 ENSMUSG00000022237 ENSMUST00000227391 Ankrd33b protein_coding Interval_98345 chr2 151641843 151642083 + 0 NA Intergenic Intergenic -9402 ENSMUSG00000027457.15 ENSMUSG00000027457 ENSMUST00000133378 Snph protein_coding Interval_54828 chr14 75565392 75565972 + 0 NA Intergenic Intergenic 27434 ENSMUSG00000034913.10 ENSMUSG00000034913 ENSMUST00000226623 Cby2 protein_coding Interval_131084 chr5 134985389 134987042 + 0 NA promoter-TSS (ENSMUSG00000070473.4) protein_coding-promoter-TSS (ENSMUSG00000070473.4) 1 ENSMUSG00000070473.4 ENSMUSG00000070473 ENSMUST00000094245 Cldn3 protein_coding Interval_63675 chr15 102721810 102722881 + 0 NA promoter-TSS (ENSMUSG00000023055.10) protein_coding-promoter-TSS (ENSMUSG00000023055.10) -12285 ENSMUSG00000023055.10 ENSMUSG00000023055 ENSMUST00000230374 Calcoco1 protein_coding Interval_162905 chr9 12678829 12679031 + 0 NA Intergenic Intergenic -101235 ENSMUSG00000089477.1 ENSMUSG00000089477 ENSMUST00000158852 Gm25365 rRNA Interval_5959 chr1 93528730 93529291 + 0 NA intron (ENSMUSG00000034066.13, intron 2 of 12) protein_coding-intron (ENSMUSG00000034066.13, intron 2 of 26) -2805 ENSMUSG00000103854.1 ENSMUSG00000103854 ENSMUST00000194919 Gm37250 TEC Interval_122565 chr5 23823988 23824417 + 0 NA promoter-TSS (ENSMUSG00000118636.1) transcribed_unitary_pseudogene-promoter-TSS (ENSMUSG00000118636.1) -624 ENSMUSG00000118636.1 ENSMUSG00000118636 ENSMUST00000239171 AC117663.3 transcribed_unitary_pseudogene Interval_100629 chr2 170597840 170599020 + 0 NA intron (ENSMUSG00000043583.1, intron 1 of 1) protein_coding-intron (ENSMUSG00000043583.1, intron 1 of 1) 3587 ENSMUSG00000043583.1 ENSMUSG00000043583 ENSMUST00000062355 4930470P17Rik protein_coding Interval_173235 chrX 74863920 74864416 + 0 NA Intergenic Intergenic 3290 ENSMUSG00000081832.1 ENSMUSG00000081832 ENSMUST00000117714 Gm6897 unprocessed_pseudogene Interval_85824 chr19 32174301 32175233 + 0 NA intron (ENSMUSG00000040451.18, intron 3 of 10) protein_coding-intron (ENSMUSG00000040451.18, intron 5 of 9) 34506 ENSMUSG00000118064.1 ENSMUSG00000118064 ENSMUST00000235377 Gm50210 sense_intronic Interval_155864 chr8 40380158 40380445 + 0 NA intron (ENSMUSG00000039478.15, intron 5 of 7) protein_coding-intron (ENSMUSG00000039478.15, intron 12 of 14) 25998 ENSMUSG00000039478.15 ENSMUSG00000039478 ENSMUST00000132481 Micu3 protein_coding Interval_19050 chr10 94082149 94082865 + 0 NA intron (ENSMUSG00000020021.4, intron 2 of 2) protein_coding-intron (ENSMUSG00000020021.4, intron 3 of 20) 9965 ENSMUSG00000020021.4 ENSMUSG00000020021 ENSMUST00000125535 Fgd6 protein_coding Interval_133614 chr6 7680278 7680829 + 0 NA TTS (ENSMUSG00000029752.12) protein_coding-TTS (ENSMUSG00000029752.12) 12319 ENSMUSG00000029752.12 ENSMUSG00000029752 ENSMUST00000148349 Asns protein_coding Interval_36659 chr12 51814635 51814846 + 0 NA intron (ENSMUSG00000035247.16, intron 2 of 42) protein_coding-intron (ENSMUSG00000035247.16, intron 2 of 42) 25881 ENSMUSG00000112746.1 ENSMUSG00000112746 ENSMUST00000218295 Gm19309 processed_pseudogene Interval_167011 chr9 64507314 64508630 + 0 NA intron (ENSMUSG00000036466.17, intron 3 of 24) protein_coding-intron (ENSMUSG00000036466.17, intron 3 of 24) 122346 ENSMUSG00000036466.17 ENSMUSG00000036466 ENSMUST00000153934 Megf11 protein_coding Interval_22066 chr11 6113085 6113637 + 0 NA exon (ENSMUSG00000053838.14, exon 5 of 6) protein_coding-exon (ENSMUSG00000053838.14, exon 5 of 6) 59675 ENSMUSG00000083022.1 ENSMUSG00000083022 ENSMUST00000117476 Rps15a-ps6 processed_pseudogene Interval_112332 chr4 40624406 40626404 + 0 NA Intergenic Intergenic -52927 ENSMUSG00000081720.1 ENSMUSG00000081720 ENSMUST00000117626 Gm12391 processed_pseudogene Interval_158360 chr8 82818046 82819466 + 0 NA Intergenic Intergenic -15395 ENSMUSG00000109643.1 ENSMUSG00000109643 ENSMUST00000209358 Gm31545 lincRNA Interval_21072 chr10 125916626 125917862 + 0 NA Intergenic Intergenic -48990 ENSMUSG00000020105.9 ENSMUSG00000020105 ENSMUST00000219974 Lrig3 protein_coding Interval_86729 chr19 43449201 43449481 + 0 NA intron (ENSMUSG00000025189.9, intron 1 of 11) protein_coding-intron (ENSMUSG00000025189.9, intron 1 of 10) -8881 ENSMUSG00000114742.1 ENSMUSG00000114742 ENSMUST00000225283 Gm47936 antisense Interval_92606 chr2 61341162 61342185 + 0 NA Intergenic Intergenic 61395 ENSMUSG00000077464.1 ENSMUSG00000077464 ENSMUST00000104276 Gm26422 snoRNA Interval_56256 chr14 115091889 115093364 + 0 NA promoter-TSS (ENSMUSG00000022112.14) protein_coding-promoter-TSS (ENSMUSG00000022112.14) 411 ENSMUSG00000022112.14 ENSMUSG00000022112 ENSMUST00000022707 Gpc5 protein_coding Interval_115011 chr4 88447511 88447745 + 0 NA Intergenic Intergenic -8700 ENSMUSG00000028497.12 ENSMUSG00000028497 ENSMUST00000030221 Hacd4 protein_coding Interval_130152 chr5 124561941 124562194 + 0 NA intron (ENSMUSG00000029389.17, intron 1 of 4) protein_coding-intron (ENSMUSG00000029389.17, intron 9 of 13) 6406 ENSMUSG00000029389.17 ENSMUSG00000029389 ENSMUST00000142451 Ddx55 protein_coding Interval_142125 chr6 137449370 137450044 + 0 NA intron (ENSMUSG00000030223.14, intron 11 of 14) protein_coding-intron (ENSMUSG00000030223.14, intron 23 of 26) 18402 ENSMUSG00000107759.1 ENSMUSG00000107759 ENSMUST00000204925 Gm44258 sense_intronic Interval_83720 chr19 3942312 3943682 + 0 NA intron (ENSMUSG00000036908.17, intron 4 of 5) protein_coding-intron (ENSMUSG00000036908.17, intron 1 of 4) 6918 ENSMUSG00000036908.17 ENSMUSG00000036908 ENSMUST00000161415 Unc93b1 protein_coding Interval_124345 chr5 44258079 44258383 + 0 NA Intergenic Intergenic -31614 ENSMUSG00000046985.11 ENSMUSG00000046985 ENSMUST00000196151 Tapt1 protein_coding Interval_28336 chr11 75271103 75271456 + 0 NA Intergenic Intergenic 47329 ENSMUSG00000106179.1 ENSMUSG00000106179 ENSMUST00000198372 Gm47300 miRNA Interval_138784 chr6 91827942 91829053 + 0 NA Intergenic Intergenic -32237 ENSMUSG00000030098.15 ENSMUSG00000030098 ENSMUST00000205964 Grip2 protein_coding Interval_84371 chr19 10435741 10436616 + 0 NA TTS (ENSMUSG00000024743.16) protein_coding-TTS (ENSMUSG00000024743.16) -3719 ENSMUSG00000118310.1 ENSMUSG00000118310 ENSMUST00000238123 Gm50268 TEC Interval_64488 chr16 12417158 12417763 + 0 NA Intergenic Intergenic -8283 ENSMUSG00000116013.1 ENSMUSG00000116013 ENSMUST00000231050 C87114 processed_pseudogene Interval_52563 chr14 47533559 47534455 + 0 NA Intergenic Intergenic -7973 ENSMUSG00000115823.1 ENSMUSG00000115823 ENSMUST00000228568 Gm49004 antisense Interval_172514 chrX 22848920 22849224 + 0 NA Intergenic Intergenic -12864 ENSMUSG00000064659.1 ENSMUSG00000064659 ENSMUST00000082725 Gm26131 snRNA Interval_1944 chr1 34823382 34823572 + 0 NA promoter-TSS (ENSMUSG00000104358.1) TEC-promoter-TSS (ENSMUSG00000104358.1) -48 ENSMUSG00000104358.1 ENSMUSG00000104358 ENSMUST00000192924 Gm37127 TEC Interval_117507 chr4 124259192 124259502 + 0 NA Intergenic Intergenic 19830 ENSMUSG00000103541.1 ENSMUSG00000103541 ENSMUST00000193103 Gm37667 TEC Interval_138404 chr6 87906513 87907231 + 0 NA intron (ENSMUSG00000030058.17, intron 4 of 7) protein_coding-intron (ENSMUSG00000030058.17, intron 18 of 23) -7078 ENSMUSG00000030060.14 ENSMUSG00000030060 ENSMUST00000148914 Hmces protein_coding Interval_24324 chr11 32369345 32369605 + 0 NA intron (ENSMUSG00000040711.8, intron 1 of 13) protein_coding-intron (ENSMUSG00000040711.8, intron 1 of 12) 21655 ENSMUSG00000040711.8 ENSMUSG00000040711 ENSMUST00000138771 Sh3pxd2b protein_coding Interval_142588 chr6 143612443 143613589 + 0 NA intron (ENSMUSG00000086887.1, intron 4 of 4) lincRNA-intron (ENSMUSG00000086887.1, intron 4 of 4) 38272 ENSMUSG00000086887.1 ENSMUSG00000086887 ENSMUST00000150559 1700060C16Rik lincRNA Interval_141936 chr6 135563725 135564562 + 0 NA Intergenic Intergenic -20049 ENSMUSG00000065187.1 ENSMUSG00000065187 ENSMUST00000083253 Gm25136 snoRNA Interval_90964 chr2 33753463 33754807 + 0 NA intron (ENSMUSG00000038740.9, intron 8 of 9) protein_coding-intron (ENSMUSG00000038740.9, intron 8 of 9) 34624 ENSMUSG00000038740.9 ENSMUSG00000038740 ENSMUST00000146892 Mvb12b protein_coding Interval_84986 chr19 21000693 21001229 + 0 NA Intergenic Intergenic 78569 ENSMUSG00000118293.1 ENSMUSG00000118293 ENSMUST00000238088 Gm32750 antisense Interval_166352 chr9 58539813 58540151 + 0 NA intron (ENSMUSG00000035914.11, intron 2 of 7) protein_coding-intron (ENSMUSG00000035914.11, intron 1 of 6) 732 ENSMUSG00000035914.11 ENSMUSG00000035914 ENSMUST00000213722 Cd276 protein_coding Interval_70509 chr17 11232104 11232832 + 0 NA intron (ENSMUSG00000023826.16, intron 3 of 3) protein_coding-intron (ENSMUSG00000023826.16, intron 2 of 6) -16876 ENSMUSG00000103324.1 ENSMUSG00000103324 ENSMUST00000194525 Gm37402 TEC Interval_12814 chr10 5794831 5795121 + 0 NA Intergenic Intergenic 9624 ENSMUSG00000019773.7 ENSMUSG00000019773 ENSMUST00000142200 Fbxo5 protein_coding Interval_51800 chr14 32301655 32302814 + 0 NA intron (ENSMUSG00000115813.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000115813.1, intron 1 of 1) 310 ENSMUSG00000115813.1 ENSMUSG00000115813 ENSMUST00000226403 Gm46447 lincRNA Interval_43386 chr13 29956670 29958145 + 0 NA intron (ENSMUSG00000016477.18, intron 1 of 6) protein_coding-intron (ENSMUSG00000016477.18, intron 1 of 6) 17124 ENSMUSG00000086893.1 ENSMUSG00000086893 ENSMUST00000144277 Gm11365 antisense Interval_158954 chr8 88214259 88215101 + 0 NA intron (ENSMUSG00000036779.12, intron 2 of 12) protein_coding-intron (ENSMUSG00000036779.12, intron 2 of 11) -37292 ENSMUSG00000036779.12 ENSMUSG00000036779 ENSMUST00000154115 Tent4b protein_coding Interval_95875 chr2 117652946 117653273 + 0 NA Intergenic Intergenic 150555 ENSMUSG00000101394.1 ENSMUSG00000101394 ENSMUST00000191321 Gm28183 lincRNA Interval_6293 chr1 105567869 105568473 + 0 NA exon (ENSMUSG00000056536.14, exon 1 of 10) protein_coding-exon (ENSMUSG00000056536.14, exon 1 of 10) 968 ENSMUSG00000101214.1 ENSMUSG00000101214 ENSMUST00000188743 Gm28403 sense_overlapping Interval_119111 chr4 135615232 135615741 + 0 NA Intergenic Intergenic -11332 ENSMUSG00000086788.2 ENSMUSG00000086788 ENSMUST00000148529 1700029M20Rik lincRNA Interval_111362 chr4 19694669 19694950 + 0 NA intron (ENSMUSG00000041058.15, intron 1 of 24) protein_coding-intron (ENSMUSG00000041058.15, intron 1 of 24) 14184 ENSMUSG00000041058.15 ENSMUSG00000041058 ENSMUST00000035982 Wwp1 protein_coding Interval_151922 chr7 127559512 127562195 + 0 NA promoter-TSS (ENSMUSG00000106715.3) protein_coding-promoter-TSS (ENSMUSG00000106715.3) -726 ENSMUSG00000106715.3 ENSMUSG00000106715 ENSMUST00000190278 Tmem265 protein_coding Interval_161305 chr8 119632326 119633972 + 0 NA exon (ENSMUSG00000045246.11, exon 2 of 3) protein_coding-exon (ENSMUSG00000045246.11, exon 2 of 3) 2197 ENSMUSG00000045246.11 ENSMUSG00000045246 ENSMUST00000061828 Kcng4 protein_coding Interval_36537 chr12 48946296 48946953 + 0 NA Intergenic Intergenic -40580 ENSMUSG00000108639.1 ENSMUSG00000108639 ENSMUST00000205588 AC124542.1 unprocessed_pseudogene Interval_8031 chr1 135299849 135300569 + 0 NA exon (ENSMUSG00000062580.9, exon 6 of 6) protein_coding-exon (ENSMUSG00000062580.9, exon 6 of 6) 9630 ENSMUSG00000062580.9 ENSMUSG00000062580 ENSMUST00000125454 Timm17a protein_coding Interval_161102 chr8 117469786 117470306 + 0 NA Intergenic Intergenic 10781 ENSMUSG00000098483.1 ENSMUSG00000098483 ENSMUST00000183794 Mir7078 miRNA Interval_138838 chr6 92441432 92441649 + 0 NA intron (ENSMUSG00000030020.13, intron 2 of 7) protein_coding-intron (ENSMUSG00000030020.13, intron 3 of 8) -120237 ENSMUSG00000098130.1 ENSMUSG00000098130 ENSMUST00000182175 Gm17797 processed_pseudogene Interval_164237 chr9 33659370 33660243 + 0 NA Intergenic Intergenic 62441 ENSMUSG00000111276.1 ENSMUSG00000111276 ENSMUST00000215867 Gm47778 lincRNA Interval_1979 chr1 35435775 35436611 + 0 NA Intergenic Intergenic 215104 ENSMUSG00000104417.1 ENSMUSG00000104417 ENSMUST00000195168 Gm37068 lincRNA Interval_60946 chr15 78076189 78076427 + 0 NA intron (ENSMUSG00000019146.2, intron 1 of 3) protein_coding-intron (ENSMUSG00000019146.2, intron 1 of 3) -43398 ENSMUSG00000092375.1 ENSMUSG00000092375 ENSMUST00000174277 A730060N03Rik antisense Interval_84335 chr19 10190774 10191640 + 0 NA promoter-TSS (ENSMUSG00000098363.1) miRNA-promoter-TSS (ENSMUSG00000098363.1) -168 ENSMUSG00000098363.1 ENSMUSG00000098363 ENSMUST00000184912 Mir6993 miRNA Interval_82562 chr18 75172290 75172564 + 0 NA intron (ENSMUSG00000035765.10, intron 13 of 16) protein_coding-intron (ENSMUSG00000035765.10, intron 13 of 16) 10387 ENSMUSG00000094153.2 ENSMUSG00000094153 ENSMUST00000179328 Gm8807 processed_pseudogene Interval_61739 chr15 83689370 83689794 + 0 NA intron (ENSMUSG00000016763.15, intron 3 of 21) protein_coding-intron (ENSMUSG00000016763.15, intron 3 of 22) -75843 ENSMUSG00000016763.15 ENSMUSG00000016763 ENSMUST00000229057 Scube1 protein_coding Interval_31189 chr11 98785930 98787394 + 0 NA Intergenic Intergenic -16236 ENSMUSG00000020889.11 ENSMUSG00000020889 ENSMUST00000139220 Nr1d1 protein_coding Interval_110884 chr4 9519720 9519950 + 0 NA intron (ENSMUSG00000028207.18, intron 16 of 22) protein_coding-intron (ENSMUSG00000028207.18, intron 17 of 23) -72636 ENSMUSG00000087564.1 ENSMUSG00000087564 ENSMUST00000155578 Gm11817 antisense Interval_17034 chr10 70716777 70717919 + 0 NA intron (ENSMUSG00000112607.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000112607.1, intron 1 of 1) 21496 ENSMUSG00000112607.1 ENSMUSG00000112607 ENSMUST00000219486 Gm33979 lincRNA Interval_7459 chr1 131513901 131514902 + 0 NA promoter-TSS (ENSMUSG00000026425.15) protein_coding-promoter-TSS (ENSMUSG00000026425.15) -13502 ENSMUSG00000055184.4 ENSMUSG00000055184 ENSMUST00000068613 Fam72a protein_coding Interval_23309 chr11 21296662 21297019 + 0 NA TTS (ENSMUSG00000084048.1) processed_pseudogene-TTS (ENSMUSG00000084048.1) 1280 ENSMUSG00000084048.1 ENSMUSG00000084048 ENSMUST00000120479 Gm12042 processed_pseudogene Interval_153399 chr7 144417673 144418156 + 0 NA promoter-TSS (ENSMUSG00000037541.22) protein_coding-promoter-TSS (ENSMUSG00000037541.22) -10981 ENSMUSG00000085745.1 ENSMUSG00000085745 ENSMUST00000125355 Gm14372 antisense Interval_40030 chr12 100604132 100604996 + 0 NA intron (ENSMUSG00000021180.9, intron 5 of 16) protein_coding-intron (ENSMUSG00000021180.9, intron 5 of 17) 19169 ENSMUSG00000113195.1 ENSMUSG00000113195 ENSMUST00000222512 Gm48586 TEC Interval_22125 chr11 6494321 6494528 + 0 NA TTS (ENSMUSG00000086839.7) antisense-TTS (ENSMUSG00000086839.7) -18507 ENSMUSG00000094483.2 ENSMUSG00000094483 ENSMUST00000179343 Purb protein_coding Interval_99782 chr2 164878897 164880409 + 0 NA promoter-TSS (ENSMUSG00000039849.6) protein_coding-promoter-TSS (ENSMUSG00000039849.6) 349 ENSMUSG00000039849.6 ENSMUSG00000039849 ENSMUST00000130213 Pcif1 protein_coding Interval_103016 chr3 34476959 34477224 + 0 NA intron (ENSMUSG00000105265.4, intron 2 of 2) processed_transcript-intron (ENSMUSG00000105265.4, intron 2 of 4) 5116 ENSMUSG00000099437.1 ENSMUSG00000099437 ENSMUST00000188411 Gm29135 lincRNA Interval_98605 chr2 153546363 153547220 + 0 NA Intergenic Intergenic 54001 ENSMUSG00000079001.1 ENSMUSG00000079001 ENSMUST00000109783 4930404H24Rik protein_coding Interval_160423 chr8 109407126 109408205 + 0 NA Intergenic Intergenic 18079 ENSMUSG00000092821.1 ENSMUSG00000092821 ENSMUST00000175080 Gm23163 miRNA Interval_112181 chr4 35268574 35268779 + 0 NA Intergenic Intergenic -42501 ENSMUSG00000028300.14 ENSMUSG00000028300 ENSMUST00000149138 C9orf72 protein_coding Interval_62659 chr15 96011666 96012614 + 0 NA Intergenic Intergenic -18011 ENSMUSG00000115049.1 ENSMUSG00000115049 ENSMUST00000227616 Gm49172 processed_transcript Interval_127228 chr5 101688083 101689041 + 0 NA Intergenic Intergenic -15024 ENSMUSG00000106164.1 ENSMUSG00000106164 ENSMUST00000198824 9430085M18Rik lincRNA Interval_163890 chr9 27707510 27707789 + 0 NA Intergenic Intergenic -83498 ENSMUSG00000062257.13 ENSMUSG00000062257 ENSMUST00000126845 Opcml protein_coding Interval_162446 chr8 128831643 128831869 + 0 NA intron (ENSMUSG00000025808.17, intron 41 of 55) protein_coding-intron (ENSMUSG00000025808.17, intron 41 of 55) -32590 ENSMUSG00000025808.17 ENSMUSG00000025808 ENSMUST00000108747 Ccdc7a protein_coding Interval_120845 chr4 150991972 150992173 + 0 NA intron (ENSMUSG00000014592.21, intron 24 of 24) protein_coding-intron (ENSMUSG00000014592.21, intron 24 of 24) -5025 ENSMUSG00000028963.1 ENSMUSG00000028963 ENSMUST00000030803 Uts2 protein_coding Interval_46285 chr13 63365185 63365902 + 0 NA intron (ENSMUSG00000021461.17, intron 1 of 2) protein_coding-intron (ENSMUSG00000021461.17, intron 4 of 15) 15502 ENSMUSG00000090232.1 ENSMUSG00000090232 ENSMUST00000159296 Gm16132 sense_intronic Interval_105353 chr3 85370300 85370616 + 0 NA intron (ENSMUSG00000102805.5, intron 3 of 9) protein_coding-intron (ENSMUSG00000102805.5, intron 3 of 9) 52939 ENSMUSG00000099995.1 ENSMUSG00000099995 ENSMUST00000189046 1700036G14Rik antisense Interval_16036 chr10 60239972 60241074 + 0 NA Intergenic Intergenic -29272 ENSMUSG00000077090.1 ENSMUSG00000077090 ENSMUST00000103902 Gm22117 miRNA Interval_12712 chr10 4445207 4445573 + 0 NA intron (ENSMUSG00000061759.15, intron 3 of 3) protein_coding-intron (ENSMUSG00000061759.15, intron 3 of 4) 12750 ENSMUSG00000061759.15 ENSMUSG00000061759 ENSMUST00000131636 Armt1 protein_coding Interval_1619 chr1 30079947 30080121 + 0 NA Intergenic Intergenic 94100 ENSMUSG00000096829.1 ENSMUSG00000096829 ENSMUST00000178702 Gm23771 miRNA Interval_80847 chr18 49295444 49296055 + 0 NA Intergenic Intergenic -32506 ENSMUSG00000117724.1 ENSMUSG00000117724 ENSMUST00000235797 Gm50231 processed_pseudogene Interval_151219 chr7 119800604 119800797 + 0 NA intron (ENSMUSG00000030924.16, intron 3 of 19) protein_coding-intron (ENSMUSG00000030924.16, intron 2 of 12) -6642 ENSMUSG00000030929.17 ENSMUSG00000030929 ENSMUST00000133926 Eri2 protein_coding Interval_174231 chrX 140455517 140457268 + 0 NA promoter-TSS (ENSMUSG00000031432.3) protein_coding-promoter-TSS (ENSMUSG00000031432.3) -221 ENSMUSG00000031432.3 ENSMUSG00000031432 ENSMUST00000033809 Prps1 protein_coding Interval_14714 chr10 39273591 39274737 + 0 NA Intergenic Intergenic 29118 ENSMUSG00000111008.1 ENSMUSG00000111008 ENSMUST00000213973 Gm31562 lincRNA Interval_131748 chr5 139640351 139640852 + 0 NA Intergenic Intergenic -61046 ENSMUSG00000104637.1 ENSMUSG00000104637 ENSMUST00000198319 Gm42424 processed_pseudogene Interval_93004 chr2 69500204 69500873 + 0 NA intron (ENSMUSG00000027070.14, intron 30 of 78) protein_coding-intron (ENSMUSG00000027070.14, intron 30 of 78) 8607 ENSMUSG00000027070.14 ENSMUSG00000027070 ENSMUST00000092551 Lrp2 protein_coding Interval_51022 chr14 21632323 21632600 + 0 NA intron (ENSMUSG00000021767.19, intron 9 of 15) protein_coding-intron (ENSMUSG00000021767.19, intron 10 of 16) 70641 ENSMUSG00000063821.6 ENSMUSG00000063821 ENSMUST00000224735 Dupd1 protein_coding Interval_140593 chr6 119922381 119922859 + 0 NA TTS (ENSMUSG00000030166.14) protein_coding-TTS (ENSMUSG00000030166.14) 4538 ENSMUSG00000030166.14 ENSMUSG00000030166 ENSMUST00000204319 Rad52 protein_coding Interval_17304 chr10 75717649 75718091 + 0 NA intron (ENSMUSG00000020196.10, intron 2 of 3) protein_coding-intron (ENSMUSG00000020196.10, intron 23 of 36) 14750 ENSMUSG00000020196.10 ENSMUSG00000020196 ENSMUST00000218480 Cabin1 protein_coding Interval_151634 chr7 125561390 125561950 + 0 NA intron (ENSMUSG00000030748.9, intron 1 of 4) protein_coding-intron (ENSMUSG00000030748.9, intron 1 of 10) 9383 ENSMUSG00000030748.9 ENSMUSG00000030748 ENSMUST00000206846 Il4ra protein_coding Interval_155165 chr8 27159464 27161746 + 0 NA intron (ENSMUSG00000109589.1, intron 1 of 2) protein_coding-intron (ENSMUSG00000031488.14, intron 1 of 4) 777 ENSMUSG00000109589.1 ENSMUSG00000109589 ENSMUST00000211028 Gm45267 antisense Interval_141507 chr6 128760056 128761327 + 0 NA Intergenic Intergenic 16047 ENSMUSG00000107866.1 ENSMUSG00000107866 ENSMUST00000203128 Gm43907 processed_pseudogene Interval_23131 chr11 20087765 20088364 + 0 NA intron (ENSMUSG00000020152.7, intron 4 of 5) protein_coding-intron (ENSMUSG00000020152.7, intron 4 of 8) 24845 ENSMUSG00000020152.7 ENSMUSG00000020152 ENSMUST00000134779 Actr2 protein_coding Interval_11733 chr1 184965579 184966329 + 0 NA intron (ENSMUSG00000026620.11, intron 1 of 17) protein_coding-intron (ENSMUSG00000026620.11, intron 1 of 17) 33521 ENSMUSG00000026620.11 ENSMUSG00000026620 ENSMUST00000192657 Mark1 protein_coding Interval_101787 chr3 9560475 9560852 + 0 NA intron (ENSMUSG00000040209.12, intron 1 of 9) protein_coding-intron (ENSMUSG00000040209.12, intron 2 of 8) 4636 ENSMUSG00000040209.12 ENSMUSG00000040209 ENSMUST00000192832 Zfp704 protein_coding Interval_166844 chr9 63151039 63151741 + 0 NA Intergenic Intergenic -4379 ENSMUSG00000022245.15 ENSMUSG00000022245 ENSMUST00000055281 Skor1 protein_coding Interval_34178 chr11 121126034 121127024 + 0 NA Intergenic Intergenic -7852 ENSMUSG00000039337.3 ENSMUSG00000039337 ENSMUST00000039146 Tex19.2 protein_coding Interval_134902 chr6 33368972 33369426 + 0 NA intron (ENSMUSG00000029763.17, intron 2 of 4) protein_coding-intron (ENSMUSG00000029763.17, intron 7 of 17) 8247 ENSMUSG00000083728.1 ENSMUSG00000083728 ENSMUST00000121183 Gm13854 processed_pseudogene Interval_4020 chr1 66654591 66656009 + 0 NA intron (ENSMUSG00000055567.18, intron 50 of 63) protein_coding-intron (ENSMUSG00000055567.18, intron 51 of 64) 37056 ENSMUSG00000103375.1 ENSMUSG00000103375 ENSMUST00000192513 Gm37181 TEC Interval_8582 chr1 143392732 143393078 + 0 NA Intergenic Intergenic -247759 ENSMUSG00000033849.3 ENSMUSG00000033849 ENSMUST00000038252 B3galt2 protein_coding Interval_141157 chr6 125320842 125322819 + 0 NA exon (ENSMUSG00000030340.16, exon 1 of 12) protein_coding-exon (ENSMUSG00000030340.16, exon 1 of 12) 309 ENSMUSG00000030340.16 ENSMUSG00000030340 ENSMUST00000177329 Scnn1a protein_coding Interval_43765 chr13 36200095 36200355 + 0 NA intron (ENSMUSG00000021420.13, intron 2 of 7) protein_coding-intron (ENSMUSG00000021420.13, intron 1 of 6) -10502 ENSMUSG00000114407.1 ENSMUSG00000114407 ENSMUST00000223888 Gm48765 antisense Interval_113663 chr4 57383247 57383943 + 0 NA Intergenic Intergenic -11641 ENSMUSG00000095042.1 ENSMUSG00000095042 ENSMUST00000119266 Gm12537 processed_pseudogene Interval_49401 chr13 111744503 111744821 + 0 NA Intergenic Intergenic 6711 ENSMUSG00000021754.17 ENSMUSG00000021754 ENSMUST00000145055 Map3k1 protein_coding Interval_13922 chr10 24661570 24662841 + 0 NA intron (ENSMUSG00000037370.13, intron 11 of 21) protein_coding-intron (ENSMUSG00000037370.13, intron 11 of 24) 49792 ENSMUSG00000037370.13 ENSMUSG00000037370 ENSMUST00000142974 Enpp1 protein_coding Interval_86405 chr19 40270610 40273324 + 0 NA promoter-TSS (ENSMUSG00000055044.12) protein_coding-promoter-TSS (ENSMUSG00000055044.12) -10310 ENSMUSG00000117793.1 ENSMUSG00000117793 ENSMUST00000237233 Gm5693 processed_pseudogene Interval_51043 chr14 21759159 21759872 + 0 NA intron (ENSMUSG00000021770.11, intron 1 of 5) protein_coding-intron (ENSMUSG00000021770.11, intron 1 of 5) 8967 ENSMUSG00000021770.11 ENSMUSG00000021770 ENSMUST00000142023 Samd8 protein_coding Interval_154685 chr8 22593172 22594461 + 0 NA promoter-TSS (ENSMUSG00000008892.12) protein_coding-promoter-TSS (ENSMUSG00000008892.12) -7695 ENSMUSG00000008892.12 ENSMUSG00000008892 ENSMUST00000211222 Vdac3 protein_coding Interval_47162 chr13 76801906 76802570 + 0 NA intron (ENSMUSG00000021596.16, intron 5 of 10) protein_coding-intron (ENSMUSG00000021596.16, intron 9 of 20) -22969 ENSMUSG00000021596.16 ENSMUSG00000021596 ENSMUST00000149028 Mctp1 protein_coding Interval_55088 chr14 77890074 77890552 + 0 NA Intergenic Intergenic -14094 ENSMUSG00000022014.15 ENSMUSG00000022014 ENSMUST00000227903 Epsti1 protein_coding Interval_44255 chr13 43030258 43030540 + 0 NA intron (ENSMUSG00000054728.17, intron 2 of 4) protein_coding-intron (ENSMUSG00000054728.17, intron 2 of 11) 22011 ENSMUSG00000088527.1 ENSMUSG00000088527 ENSMUST00000157902 Gm26086 misc_RNA Interval_20081 chr10 113593011 113594344 + 0 NA Intergenic Intergenic -30914 ENSMUSG00000112087.1 ENSMUSG00000112087 ENSMUST00000218612 Gm40765 lincRNA Interval_72535 chr17 30556845 30558054 + 0 NA intron (ENSMUSG00000118341.1, intron 1 of 6) protein_coding-intron (ENSMUSG00000062202.14, intron 1 of 11) -19019 ENSMUSG00000117725.1 ENSMUSG00000117725 ENSMUST00000237645 Gm50240 antisense Interval_27554 chr11 68647859 68648827 + 0 NA Intergenic Intergenic -43811 ENSMUSG00000020900.15 ENSMUSG00000020900 ENSMUST00000139059 Myh10 protein_coding Interval_153695 chr8 4663464 4664635 + 0 NA Intergenic Intergenic 11985 ENSMUSG00000109448.1 ENSMUSG00000109448 ENSMUST00000208203 Gm45224 processed_pseudogene Interval_148605 chr7 83126469 83126921 + 0 NA intron (ENSMUSG00000053528.6, intron 1 of 3) lincRNA-intron (ENSMUSG00000053528.6, intron 1 of 3) 42314 ENSMUSG00000053528.6 ENSMUSG00000053528 ENSMUST00000208111 A530021J07Rik lincRNA Interval_46071 chr13 60748445 60748922 + 0 NA intron (ENSMUSG00000021559.14, intron 20 of 26) protein_coding-intron (ENSMUSG00000021559.14, intron 20 of 26) -22992 ENSMUSG00000096874.2 ENSMUSG00000096874 ENSMUST00000078515 Gm10312 processed_pseudogene Interval_8766 chr1 150679131 150679342 + 0 NA intron (ENSMUSG00000066842.18, intron 48 of 105) protein_coding-intron (ENSMUSG00000066842.18, intron 48 of 106) 53937 ENSMUSG00000093650.2 ENSMUSG00000093650 ENSMUST00000177268 Gm20631 antisense Interval_91741 chr2 48967278 48967493 + 0 NA intron (ENSMUSG00000036792.12, intron 2 of 14) protein_coding-intron (ENSMUSG00000036792.12, intron 1 of 10) -57372 ENSMUSG00000026761.12 ENSMUSG00000026761 ENSMUST00000123271 Orc4 protein_coding Interval_146252 chr7 44973853 44975439 + 0 NA TTS (ENSMUSG00000109111.1) antisense-TTS (ENSMUSG00000109111.1) 1066 ENSMUSG00000109111.1 ENSMUSG00000109111 ENSMUST00000209089 6530437J22Rik antisense Interval_73130 chr17 34980720 34982576 + 0 NA promoter-TSS (ENSMUSG00000007050.17) protein_coding-promoter-TSS (ENSMUSG00000007050.17) 140 ENSMUSG00000073415.4 ENSMUSG00000073415 ENSMUST00000151136 Gm10501 antisense Interval_25780 chr11 51660791 51661045 + 0 NA Intergenic Intergenic 9964 ENSMUSG00000052563.13 ENSMUSG00000052563 ENSMUST00000064493 D930048N14Rik protein_coding Interval_101453 chr2 181522928 181523209 + 0 NA intron (ENSMUSG00000000826.16, intron 2 of 5) protein_coding-intron (ENSMUSG00000000826.16, intron 1 of 4) 2256 ENSMUSG00000000826.16 ENSMUSG00000000826 ENSMUST00000141523 Dnajc5 protein_coding Interval_82816 chr18 77175744 77177039 + 0 NA Intergenic Intergenic 9972 ENSMUSG00000073532.3 ENSMUSG00000073532 ENSMUST00000097520 Gm7276 bidirectional_promoter_lncRNA Interval_146705 chr7 49565328 49565626 + 0 NA intron (ENSMUSG00000052512.17, intron 22 of 38) protein_coding-intron (ENSMUSG00000052512.17, intron 22 of 37) 71372 ENSMUSG00000030507.6 ENSMUSG00000030507 ENSMUST00000032717 Dbx1 protein_coding Interval_66677 chr16 36063396 36064330 + 0 NA intron (ENSMUSG00000003955.8, intron 1 of 2) protein_coding-intron (ENSMUSG00000003955.8, intron 1 of 4) -11469 ENSMUSG00000003955.8 ENSMUSG00000003955 ENSMUST00000231379 Fam162a protein_coding Interval_60699 chr15 76232121 76233448 + 0 NA promoter-TSS (ENSMUSG00000022565.15) protein_coding-promoter-TSS (ENSMUSG00000022565.15) 1689 ENSMUSG00000063268.12 ENSMUSG00000063268 ENSMUST00000170851 Parp10 protein_coding Interval_106526 chr3 96946422 96946668 + 0 NA intron (ENSMUSG00000057123.14, intron 1 of 3) protein_coding-intron (ENSMUSG00000057123.14, intron 1 of 3) -20525 ENSMUSG00000049908.6 ENSMUSG00000049908 ENSMUST00000062944 Gja8 protein_coding Interval_150633 chr7 112974478 112975280 + 0 NA Intergenic Intergenic -1996 ENSMUSG00000110109.1 ENSMUSG00000110109 ENSMUST00000209602 Gm5599 processed_pseudogene Interval_67776 chr16 57115942 57116297 + 0 NA Intergenic Intergenic -37141 ENSMUSG00000022752.9 ENSMUSG00000022752 ENSMUST00000231901 Tomm70a protein_coding Interval_92818 chr2 65883038 65883446 + 0 NA intron (ENSMUSG00000044647.16, intron 2 of 2) protein_coding-intron (ENSMUSG00000044647.16, intron 2 of 5) -22623 ENSMUSG00000052865.5 ENSMUSG00000052865 ENSMUST00000155722 Gm13619 antisense Interval_24955 chr11 41999422 42000165 + 0 NA intron (ENSMUSG00000020436.17, intron 1 of 7) protein_coding-intron (ENSMUSG00000020436.17, intron 1 of 8) -83170 ENSMUSG00000020436.17 ENSMUSG00000020436 ENSMUST00000109290 Gabrg2 protein_coding Interval_19334 chr10 96981163 96981770 + 0 NA Intergenic Intergenic -22595 ENSMUSG00000112488.1 ENSMUSG00000112488 ENSMUST00000219918 Gm33981 lincRNA Interval_29197 chr11 81453905 81454434 + 0 NA intron (ENSMUSG00000020704.13, intron 1 of 9) protein_coding-intron (ENSMUSG00000020704.13, intron 1 of 9) 69156 ENSMUSG00000086971.1 ENSMUSG00000086971 ENSMUST00000141593 4930527B05Rik antisense Interval_76808 chr17 84205003 84205222 + 0 NA intron (ENSMUSG00000024251.10, intron 11 of 12) protein_coding-intron (ENSMUSG00000024251.10, intron 36 of 37) -17165 ENSMUSG00000045817.8 ENSMUSG00000045817 ENSMUST00000060366 Zfp36l2 protein_coding Interval_172163 chrX 8125212 8126143 + 0 NA TTS (ENSMUSG00000031166.13) protein_coding-TTS (ENSMUSG00000031166.13) 7168 ENSMUSG00000031166.13 ENSMUSG00000031166 ENSMUST00000130050 Wdr13 protein_coding Interval_74723 chr17 56159715 56160007 + 0 NA Intergenic Intergenic -2616 ENSMUSG00000044469.8 ENSMUSG00000044469 ENSMUST00000077788 Tnfaip8l1 protein_coding Interval_95604 chr2 112733022 112733332 + 0 NA intron (ENSMUSG00000057378.15, intron 61 of 103) protein_coding-intron (ENSMUSG00000057378.15, intron 61 of 102) -76629 ENSMUSG00000057378.15 ENSMUSG00000057378 ENSMUST00000208135 Ryr3 protein_coding Interval_126503 chr5 89226857 89227044 + 0 NA intron (ENSMUSG00000060961.16, intron 23 of 25) protein_coding-intron (ENSMUSG00000060961.16, intron 22 of 24) 208678 ENSMUSG00000035540.12 ENSMUSG00000035540 ENSMUST00000200534 Gc protein_coding Interval_132472 chr5 145164853 145165387 + 0 NA TTS (ENSMUSG00000029624.10) protein_coding-TTS (ENSMUSG00000029624.10) 1836 ENSMUSG00000029624.10 ENSMUSG00000029624 ENSMUST00000161390 Ptcd1 protein_coding Interval_142913 chr6 146898629 146898864 + 0 NA intron (ENSMUSG00000016487.15, intron 1 of 27) protein_coding-intron (ENSMUSG00000016487.15, intron 1 of 26) 41885 ENSMUSG00000030292.10 ENSMUSG00000030292 ENSMUST00000148099 Smco2 protein_coding Interval_37401 chr12 66998875 66999374 + 0 NA intron (ENSMUSG00000034912.18, intron 1 of 15) protein_coding-intron (ENSMUSG00000034912.18, intron 1 of 16) 56713 ENSMUSG00000114180.1 ENSMUSG00000114180 ENSMUST00000221928 Gm47989 TEC Interval_13752 chr10 21821126 21821985 + 0 NA Intergenic Intergenic 23296 ENSMUSG00000097107.1 ENSMUSG00000097107 ENSMUST00000180731 Platr6 lincRNA Interval_81199 chr18 56364257 56364681 + 0 NA Intergenic Intergenic -25674 ENSMUSG00000117688.1 ENSMUSG00000117688 ENSMUST00000235993 Gm8629 processed_pseudogene Interval_92910 chr2 68385618 68386656 + 0 NA intron (ENSMUSG00000027030.15, intron 5 of 15) protein_coding-intron (ENSMUSG00000027030.15, intron 5 of 17) 544 ENSMUSG00000027030.15 ENSMUSG00000027030 ENSMUST00000149581 Stk39 protein_coding Interval_134656 chr6 30173218 30176160 + 0 NA exon (ENSMUSG00000103108.2, exon 1 of 1) lincRNA-exon (ENSMUSG00000103108.2, exon 1 of 1) 1796 ENSMUSG00000103108.2 ENSMUSG00000103108 ENSMUST00000194541 Rncr4 lincRNA Interval_986 chr1 13643032 13643803 + 0 NA promoter-TSS (ENSMUSG00000102982.1) TEC-promoter-TSS (ENSMUSG00000102982.1) -669 ENSMUSG00000102982.1 ENSMUSG00000102982 ENSMUST00000194537 Gm38319 TEC Interval_102277 chr3 20331170 20331397 + 0 NA intron (ENSMUSG00000054988.9, intron 1 of 2) protein_coding-intron (ENSMUSG00000054988.9, intron 1 of 1) 22876 ENSMUSG00000105208.1 ENSMUSG00000105208 ENSMUST00000196460 Gm43525 lincRNA Interval_72479 chr17 30064125 30064755 + 0 NA intron (ENSMUSG00000044477.12, intron 2 of 5) protein_coding-intron (ENSMUSG00000044477.12, intron 2 of 4) -59749 ENSMUSG00000117371.1 ENSMUSG00000117371 ENSMUST00000233996 Gm50019 bidirectional_promoter_lncRNA Interval_167506 chr9 70140800 70142248 + 0 NA promoter-TSS (ENSMUSG00000032224.15) protein_coding-promoter-TSS (ENSMUSG00000032224.15) 7412 ENSMUSG00000077660.1 ENSMUSG00000077660 ENSMUST00000104472 Gm24257 snoRNA Interval_123769 chr5 35379232 35380214 + 0 NA exon (ENSMUSG00000055944.3, exon 2 of 2) lincRNA-exon (ENSMUSG00000055944.3, exon 2 of 2) 8753 ENSMUSG00000055944.3 ENSMUSG00000055944 ENSMUST00000069741 E130018O15Rik lincRNA Interval_26472 chr11 58057190 58058029 + 0 NA intron (ENSMUSG00000037331.15, intron 18 of 18) protein_coding-intron (ENSMUSG00000037331.15, intron 18 of 18) 35525 ENSMUSG00000086962.4 ENSMUSG00000086962 ENSMUST00000137124 Gm12248 protein_coding Interval_50483 chr14 13960205 13961920 + 0 NA promoter-TSS (ENSMUSG00000021738.5) protein_coding-promoter-TSS (ENSMUSG00000021738.5) -3431 ENSMUSG00000053453.9 ENSMUSG00000053453 ENSMUST00000226008 Thoc7 protein_coding Interval_88475 chr2 5434229 5434695 + 0 NA intron (ENSMUSG00000039145.16, intron 3 of 10) protein_coding-intron (ENSMUSG00000039145.16, intron 3 of 10) 150812 ENSMUSG00000080820.1 ENSMUSG00000080820 ENSMUST00000117204 Gm13197 processed_pseudogene Interval_146490 chr7 46341474 46341955 + 0 NA Intergenic Intergenic 7659 ENSMUSG00000109962.1 ENSMUSG00000109962 ENSMUST00000210215 1700025L06Rik lincRNA Interval_95533 chr2 111734225 111734567 + 0 NA Intergenic Intergenic -5709 ENSMUSG00000084134.1 ENSMUSG00000084134 ENSMUST00000118569 Gm13930 processed_pseudogene Interval_166246 chr9 57773508 57774655 + 0 NA Intergenic Intergenic -3784 ENSMUSG00000091908.7 ENSMUSG00000091908 ENSMUST00000163186 Gm17231 antisense Interval_134039 chr6 17938563 17939042 + 0 NA intron (ENSMUSG00000029534.17, intron 15 of 15) protein_coding-intron (ENSMUSG00000029534.17, intron 14 of 14) 23806 ENSMUSG00000106858.1 ENSMUSG00000106858 ENSMUST00000202926 Gm43844 TEC Interval_164267 chr9 34753961 34754228 + 0 NA intron (ENSMUSG00000032036.15, intron 1 of 15) protein_coding-intron (ENSMUSG00000032036.15, intron 1 of 16) 175415 ENSMUSG00000053889.5 ENSMUSG00000053889 ENSMUST00000066604 Kirrel3os antisense Interval_141621 chr6 131398281 131398487 + 0 NA Intergenic Intergenic -17978 ENSMUSG00000065036.1 ENSMUSG00000065036 ENSMUST00000083102 Gm22362 snoRNA Interval_168548 chr9 83452084 83452298 + 0 NA intron (ENSMUSG00000099718.1, intron 2 of 2) antisense-intron (ENSMUSG00000099718.1, intron 2 of 2) 4632 ENSMUSG00000103044.1 ENSMUSG00000103044 ENSMUST00000193663 Gm37307 TEC Interval_108114 chr3 121588698 121590792 + 0 NA Intergenic Intergenic 53622 ENSMUSG00000044522.8 ENSMUSG00000044522 ENSMUST00000198402 A730020M07Rik lincRNA Interval_100574 chr2 170201668 170202236 + 0 NA Intergenic Intergenic -53849 ENSMUSG00000052056.14 ENSMUSG00000052056 ENSMUST00000149318 Zfp217 protein_coding Interval_24768 chr11 37074978 37075197 + 0 NA intron (ENSMUSG00000049336.16, intron 2 of 3) protein_coding-intron (ENSMUSG00000049336.16, intron 2 of 30) -130921 ENSMUSG00000049336.16 ENSMUSG00000049336 ENSMUST00000157030 Tenm2 protein_coding Interval_129409 chr5 119803115 119804839 + 0 NA Intergenic Intergenic 3892 ENSMUSG00000107053.1 ENSMUSG00000107053 ENSMUST00000202127 1700021F13Rik lincRNA Interval_107302 chr3 105582251 105582425 + 0 NA intron (ENSMUSG00000040896.16, intron 2 of 4) protein_coding-intron (ENSMUSG00000040896.16, intron 1 of 6) 79431 ENSMUSG00000105753.1 ENSMUSG00000105753 ENSMUST00000200070 Gm43847 sense_intronic Interval_160148 chr8 106717993 106718470 + 0 NA intron (ENSMUSG00000041949.6, intron 9 of 13) protein_coding-intron (ENSMUSG00000041949.6, intron 9 of 17) 35116 ENSMUSG00000041949.6 ENSMUSG00000041949 ENSMUST00000211979 Tango6 protein_coding Interval_168662 chr9 85634659 85635439 + 0 NA Intergenic Intergenic 4518 ENSMUSG00000111386.1 ENSMUSG00000111386 ENSMUST00000213802 Gm48842 lincRNA Interval_62948 chr15 98092695 98093832 + 0 NA promoter-TSS (ENSMUSG00000033075.17) protein_coding-promoter-TSS (ENSMUSG00000033075.17) -20 ENSMUSG00000097150.1 ENSMUSG00000097150 ENSMUST00000181802 Gm26513 antisense Interval_70644 chr17 12761859 12762322 + 0 NA intron (ENSMUSG00000023830.14, intron 1 of 47) protein_coding-intron (ENSMUSG00000023830.14, intron 1 of 47) -8541 ENSMUSG00000089525.1 ENSMUSG00000089525 ENSMUST00000158900 Gm23833 misc_RNA Interval_71519 chr17 24264140 24265737 + 0 NA intron (ENSMUSG00000035435.17, intron 30 of 30) protein_coding-intron (ENSMUSG00000035435.17, intron 29 of 29) -13591 ENSMUSG00000072082.7 ENSMUSG00000072082 ENSMUST00000234096 Ccnf protein_coding Interval_13902 chr10 24455448 24455857 + 0 NA Intergenic Intergenic 8162 ENSMUSG00000086148.1 ENSMUSG00000086148 ENSMUST00000134627 Gm15271 lincRNA Interval_115520 chr4 100061572 100061958 + 0 NA intron (ENSMUSG00000085142.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000085142.1, intron 1 of 1) 9245 ENSMUSG00000085142.1 ENSMUSG00000085142 ENSMUST00000123258 Gm12702 lincRNA Interval_48877 chr13 104239753 104239987 + 0 NA intron (ENSMUSG00000021714.15, intron 1 of 7) protein_coding-intron (ENSMUSG00000021714.15, intron 5 of 9) 3995 ENSMUSG00000021714.15 ENSMUSG00000021714 ENSMUST00000224098 Cenpk protein_coding Interval_103728 chr3 52101622 52103941 + 0 NA intron (ENSMUSG00000061143.15, intron 1 of 4) protein_coding-intron (ENSMUSG00000061143.15, intron 1 of 4) -29394 ENSMUSG00000102808.1 ENSMUSG00000102808 ENSMUST00000194956 5430420F09Rik TEC Interval_59770 chr15 59123314 59123571 + 0 NA Intergenic Intergenic -41437 ENSMUSG00000022353.10 ENSMUSG00000022353 ENSMUST00000227797 Mtss1 protein_coding Interval_84264 chr19 9098875 9099580 + 0 NA Intergenic Intergenic -11269 ENSMUSG00000024653.2 ENSMUSG00000024653 ENSMUST00000025554 Scgb1a1 protein_coding Interval_17434 chr10 76637554 76637841 + 0 NA Intergenic Intergenic -14372 ENSMUSG00000020241.13 ENSMUSG00000020241 ENSMUST00000137365 Col6a2 protein_coding Interval_153168 chr7 142025674 142026530 + 0 NA promoter-TSS (ENSMUSG00000025147.7) protein_coding-promoter-TSS (ENSMUSG00000025147.7) -151 ENSMUSG00000025147.7 ENSMUSG00000025147 ENSMUST00000211505 Mob2 protein_coding Interval_27517 chr11 68357751 68358322 + 0 NA intron (ENSMUSG00000020902.12, intron 3 of 7) protein_coding-intron (ENSMUSG00000020902.12, intron 2 of 6) 28976 ENSMUSG00000020902.12 ENSMUSG00000020902 ENSMUST00000135141 Ntn1 protein_coding Interval_96492 chr2 125067958 125068406 + 0 NA promoter-TSS (ENSMUSG00000035183.14) protein_coding-promoter-TSS (ENSMUSG00000035183.14) -12173 ENSMUSG00000035183.14 ENSMUSG00000035183 ENSMUST00000149963 Slc24a5 protein_coding Interval_32798 chr11 110773590 110774549 + 0 NA Intergenic Intergenic -193964 ENSMUSG00000051497.15 ENSMUSG00000051497 ENSMUST00000178798 Kcnj16 protein_coding Interval_16493 chr10 63182193 63183091 + 0 NA intron (ENSMUSG00000020067.8, intron 2 of 19) protein_coding-intron (ENSMUSG00000020067.8, intron 2 of 19) -59958 ENSMUSG00000020067.8 ENSMUSG00000020067 ENSMUST00000218978 Mypn protein_coding Interval_56955 chr14 123999562 123999811 + 0 NA intron (ENSMUSG00000099994.1, intron 2 of 3) protein_coding-intron (ENSMUSG00000025551.13, intron 3 of 4) 12051 ENSMUSG00000099994.1 ENSMUSG00000099994 ENSMUST00000190088 1700024B18Rik antisense Interval_124836 chr5 56121877 56122673 + 0 NA Intergenic Intergenic -35063 ENSMUSG00000105685.1 ENSMUSG00000105685 ENSMUST00000198120 Gm43315 processed_pseudogene Interval_70001 chr17 4201363 4202051 + 0 NA Intergenic Intergenic -79605 ENSMUSG00000116615.1 ENSMUSG00000116615 ENSMUST00000231319 4930548J01Rik processed_transcript Interval_65012 chr16 17858103 17859388 + 0 NA TTS (ENSMUSG00000003166.20) protein_coding-TTS (ENSMUSG00000003166.20) -21352 ENSMUSG00000090236.3 ENSMUSG00000090236 ENSMUST00000232516 Car15 protein_coding Interval_149398 chr7 98131179 98132769 + 0 NA intron (ENSMUSG00000035547.14, intron 5 of 12) protein_coding-intron (ENSMUSG00000035547.14, intron 5 of 12) 13528 ENSMUSG00000074006.3 ENSMUSG00000074006 ENSMUST00000098281 Omp protein_coding Interval_163537 chr9 21961405 21963039 + 0 NA exon (ENSMUSG00000006235.6, exon 2 of 8) protein_coding-exon (ENSMUSG00000006235.6, exon 2 of 8) 342 ENSMUSG00000006235.6 ENSMUSG00000006235 ENSMUST00000213181 Epor protein_coding Interval_43995 chr13 38848379 38848578 + 0 NA intron (ENSMUSG00000114767.1, intron 3 of 3) lincRNA-intron (ENSMUSG00000114767.1, intron 3 of 3) -13252 ENSMUSG00000114767.1 ENSMUSG00000114767 ENSMUST00000225020 Gm46392 lincRNA Interval_114041 chr4 62693388 62694155 + 0 NA intron (ENSMUSG00000059810.18, intron 5 of 9) protein_coding-intron (ENSMUSG00000059810.18, intron 11 of 15) -12210 ENSMUSG00000085223.1 ENSMUSG00000085223 ENSMUST00000150203 Gm11210 lincRNA Interval_165928 chr9 54736300 54736684 + 0 NA Intergenic Intergenic -12135 ENSMUSG00000061559.15 ENSMUSG00000061559 ENSMUST00000127451 Wdr61 protein_coding Interval_118642 chr4 132945251 132946554 + 0 NA Intergenic Intergenic -14585 ENSMUSG00000087911.1 ENSMUSG00000087911 ENSMUST00000157286 Gm24913 snRNA Interval_130549 chr5 128729380 128731269 + 0 NA intron (ENSMUSG00000029423.10, intron 2 of 13) protein_coding-intron (ENSMUSG00000029423.10, intron 2 of 13) 5705 ENSMUSG00000105483.1 ENSMUSG00000105483 ENSMUST00000196722 4930553I04Rik TEC Interval_108888 chr3 133016088 133016354 + 0 NA intron (ENSMUSG00000028018.15, intron 5 of 9) protein_coding-intron (ENSMUSG00000028018.15, intron 5 of 11) -13202 ENSMUSG00000104787.1 ENSMUSG00000104787 ENSMUST00000197045 Gm19148 processed_pseudogene Interval_89303 chr2 19031209 19031931 + 0 NA Intergenic Intergenic 33227 ENSMUSG00000026736.2 ENSMUSG00000026736 ENSMUST00000238778 4930426L09Rik bidirectional_promoter_lncRNA Interval_87963 chr19 57410345 57410985 + 0 NA Intergenic Intergenic 12829 ENSMUSG00000117927.1 ENSMUSG00000117927 ENSMUST00000237878 Gm50271 lincRNA Interval_147437 chr7 67211631 67212201 + 0 NA intron (ENSMUSG00000097527.2, intron 2 of 2) lincRNA-intron (ENSMUSG00000097527.2, intron 2 of 2) 10620 ENSMUSG00000097527.2 ENSMUSG00000097527 ENSMUST00000208802 1700112J16Rik lincRNA Interval_65995 chr16 30777270 30777650 + 0 NA Intergenic Intergenic 15795 ENSMUSG00000116570.1 ENSMUSG00000116570 ENSMUST00000231445 Gm49754 lincRNA Interval_116121 chr4 107937148 107937666 + 0 NA Intergenic Intergenic -16525 ENSMUSG00000086713.1 ENSMUSG00000086713 ENSMUST00000145831 4930407G08Rik lincRNA Interval_2667 chr1 43123510 43125451 + 0 NA intron (ENSMUSG00000008136.14, intron 5 of 5) protein_coding-intron (ENSMUSG00000008136.14, intron 5 of 5) 25770 ENSMUSG00000010290.7 ENSMUSG00000010290 ENSMUST00000010434 AI597479 protein_coding Interval_36626 chr12 51618390 51618690 + 0 NA intron (ENSMUSG00000020954.16, intron 14 of 15) protein_coding-intron (ENSMUSG00000020954.16, intron 16 of 17) 25161 ENSMUSG00000020953.17 ENSMUSG00000020953 ENSMUST00000220173 Coch protein_coding Interval_147288 chr7 65499532 65499957 + 0 NA intron (ENSMUSG00000030516.14, intron 2 of 4) protein_coding-intron (ENSMUSG00000030516.14, intron 2 of 4) -18523 ENSMUSG00000108533.1 ENSMUSG00000108533 ENSMUST00000207008 Gm44792 TEC Interval_125800 chr5 74250423 74251197 + 0 NA intron (ENSMUSG00000062110.14, intron 5 of 7) protein_coding-intron (ENSMUSG00000062110.14, intron 5 of 8) -1194 ENSMUSG00000107209.1 ENSMUSG00000107209 ENSMUST00000201308 Gm42599 TEC Interval_17199 chr10 74922822 74923044 + 0 NA Intergenic Intergenic -44276 ENSMUSG00000040009.6 ENSMUSG00000040009 ENSMUST00000159991 Gnaz protein_coding Interval_96933 chr2 129660303 129660593 + 0 NA Intergenic Intergenic 39396 ENSMUSG00000027400.11 ENSMUSG00000027400 ENSMUST00000152113 Pdyn protein_coding Interval_80804 chr18 47352760 47353185 + 0 NA intron (ENSMUSG00000019647.16, intron 1 of 16) protein_coding-intron (ENSMUSG00000019647.16, intron 1 of 18) -19624 ENSMUSG00000019647.16 ENSMUSG00000019647 ENSMUST00000144223 Sema6a protein_coding Interval_107039 chr3 103101954 103103234 + 0 NA promoter-TSS (ENSMUSG00000007379.15) protein_coding-promoter-TSS (ENSMUSG00000007379.15) 5848 ENSMUSG00000105731.1 ENSMUSG00000105731 ENSMUST00000198198 Gm43063 sense_intronic Interval_128287 chr5 112294915 112295792 + 0 NA intron (ENSMUSG00000029344.15, intron 1 of 2) protein_coding-intron (ENSMUSG00000029344.15, intron 1 of 6) 18646 ENSMUSG00000029344.15 ENSMUSG00000029344 ENSMUST00000139482 Tpst2 protein_coding Interval_47945 chr13 94548395 94549056 + 0 NA TTS (ENSMUSG00000021686.6) protein_coding-TTS (ENSMUSG00000021686.6) 31563 ENSMUSG00000084423.1 ENSMUSG00000084423 ENSMUST00000122474 Gm25109 miRNA Interval_52233 chr14 40912726 40914512 + 0 NA intron (ENSMUSG00000037824.6, intron 4 of 7) protein_coding-intron (ENSMUSG00000037824.6, intron 5 of 8) -20353 ENSMUSG00000037833.14 ENSMUSG00000037833 ENSMUST00000225854 Sh2d4b protein_coding Interval_67161 chr16 44070496 44070771 + 0 NA Intergenic Intergenic -9088 ENSMUSG00000036292.14 ENSMUSG00000036292 ENSMUST00000214764 Gramd1c protein_coding Interval_30716 chr11 96097953 96098522 + 0 NA Intergenic Intergenic 13725 ENSMUSG00000006056.13 ENSMUSG00000006056 ENSMUST00000097162 Calcoco2 protein_coding Interval_19730 chr10 108352761 108353471 + 0 NA intron (ENSMUSG00000035873.8, intron 1 of 4) protein_coding-intron (ENSMUSG00000035873.8, intron 2 of 6) -10549 ENSMUSG00000065653.1 ENSMUSG00000065653 ENSMUST00000083719 Gm23105 snoRNA Interval_99065 chr2 156973415 156973942 + 0 NA intron (ENSMUSG00000027634.14, intron 1 of 2) protein_coding-intron (ENSMUSG00000027634.14, intron 1 of 16) -9385 ENSMUSG00000098750.1 ENSMUSG00000098750 ENSMUST00000185037 Gm27653 scaRNA Interval_159393 chr8 94273356 94274806 + 0 NA exon (ENSMUSG00000110442.1, exon 1 of 1) TEC-exon (ENSMUSG00000110442.1, exon 1 of 1) 655 ENSMUSG00000110442.1 ENSMUSG00000110442 ENSMUST00000212137 Gm45804 TEC Interval_5001 chr1 84101874 84102606 + 0 NA intron (ENSMUSG00000045658.16, intron 2 of 2) protein_coding-intron (ENSMUSG00000045658.16, intron 2 of 2) 32270 ENSMUSG00000102750.1 ENSMUSG00000102750 ENSMUST00000193393 Gm37058 TEC Interval_115014 chr4 88476227 88477030 + 0 NA Intergenic Intergenic -37700 ENSMUSG00000028497.12 ENSMUSG00000028497 ENSMUST00000030221 Hacd4 protein_coding Interval_63049 chr15 98821047 98822530 + 0 NA intron (ENSMUSG00000067713.7, intron 2 of 9) protein_coding-intron (ENSMUSG00000067713.7, intron 2 of 11) 8460 ENSMUSG00000097414.2 ENSMUSG00000097414 ENSMUST00000230113 B130046B21Rik antisense Interval_23808 chr11 26444268 26444499 + 0 NA intron (ENSMUSG00000004018.9, intron 3 of 3) protein_coding-intron (ENSMUSG00000004018.9, intron 7 of 13) 35176 ENSMUSG00000081811.1 ENSMUSG00000081811 ENSMUST00000118404 Gm12713 processed_pseudogene Interval_137219 chr6 70174001 70174611 + 0 NA Intergenic Intergenic -2036 ENSMUSG00000076580.3 ENSMUSG00000076580 ENSMUST00000197272 Igkv8-27 IG_V_gene Interval_166485 chr9 59969298 59969619 + 0 NA TTS (ENSMUSG00000032289.15) protein_coding-TTS (ENSMUSG00000032289.15) -7687 ENSMUSG00000084847.7 ENSMUSG00000084847 ENSMUST00000133523 Gm15507 lincRNA Interval_124804 chr5 54280822 54281364 + 0 NA Intergenic Intergenic -68898 ENSMUSG00000105912.1 ENSMUSG00000105912 ENSMUST00000197424 Gm10440 lincRNA Interval_118726 chr4 133397158 133397982 + 0 NA intron (ENSMUSG00000028854.9, intron 1 of 11) protein_coding-intron (ENSMUSG00000028854.9, intron 1 of 11) -18736 ENSMUSG00000028854.9 ENSMUSG00000028854 ENSMUST00000141658 Slc9a1 protein_coding Interval_172553 chrX 36667950 36668461 + 0 NA promoter-TSS (ENSMUSG00000081281.1) processed_pseudogene-promoter-TSS (ENSMUSG00000081281.1) -12 ENSMUSG00000081281.1 ENSMUSG00000081281 ENSMUST00000118173 Rpl7-ps9 processed_pseudogene Interval_98154 chr2 148845929 148846215 + 0 NA TTS (ENSMUSG00000027446.2) protein_coding-TTS (ENSMUSG00000027446.2) 10925 ENSMUSG00000027445.3 ENSMUSG00000027445 ENSMUST00000028935 Cst9 protein_coding Interval_94296 chr2 87603728 87604258 + 0 NA Intergenic Intergenic -2263 ENSMUSG00000059205.5 ENSMUSG00000059205 ENSMUST00000216580 Olfr1130 protein_coding Interval_56385 chr14 118312810 118313263 + 0 NA Intergenic Intergenic -9941 ENSMUSG00000115258.1 ENSMUSG00000115258 ENSMUST00000227592 Gm32093 lincRNA Interval_49551 chr13 112881888 112882647 + 0 NA promoter-TSS (ENSMUSG00000016018.4) protein_coding-promoter-TSS (ENSMUSG00000016018.4) -1959 ENSMUSG00000098067.1 ENSMUSG00000098067 ENSMUST00000182295 Gm26943 processed_pseudogene Interval_56023 chr14 104605579 104605876 + 0 NA Intergenic Intergenic 14633 ENSMUSG00000077541.1 ENSMUSG00000077541 ENSMUST00000104353 Gm22021 snRNA Interval_106394 chr3 95890835 95892424 + 0 NA intron (ENSMUSG00000038543.13, intron 1 of 4) protein_coding-intron (ENSMUSG00000038543.13, intron 1 of 5) 301 ENSMUSG00000038543.13 ENSMUSG00000038543 ENSMUST00000133611 BC028528 protein_coding Interval_121996 chr5 13398566 13400021 + 0 NA promoter-TSS (ENSMUSG00000028883.17) protein_coding-promoter-TSS (ENSMUSG00000028883.17) -284 ENSMUSG00000028883.17 ENSMUSG00000028883 ENSMUST00000200073 Sema3a protein_coding Interval_128249 chr5 112049468 112050341 + 0 NA Intergenic Intergenic -105669 ENSMUSG00000106060.1 ENSMUSG00000106060 ENSMUST00000197648 Gm42488 lincRNA Interval_51769 chr14 32090797 32091916 + 0 NA intron (ENSMUSG00000021906.14, intron 2 of 5) protein_coding-intron (ENSMUSG00000021906.14, intron 1 of 7) 5571 ENSMUSG00000021906.14 ENSMUSG00000021906 ENSMUST00000164396 Oxnad1 protein_coding Interval_157021 chr8 64562933 64563611 + 0 NA Intergenic Intergenic -48831 ENSMUSG00000076042.1 ENSMUSG00000076042 ENSMUST00000102088 Mir710 miRNA Interval_72879 chr17 32877035 32879646 + 0 NA promoter-TSS (ENSMUSG00000117601.1) antisense-promoter-TSS (ENSMUSG00000117601.1) -398 ENSMUSG00000117654.1 ENSMUSG00000117654 ENSMUST00000234587 Gm50050 lincRNA Interval_45638 chr13 56421704 56423170 + 0 NA Intergenic Intergenic -4157 ENSMUSG00000110477.1 ENSMUSG00000110477 ENSMUST00000212844 Gm3045 protein_coding Interval_23533 chr11 23171989 23172571 + 0 NA TTS (ENSMUSG00000088495.1) snoRNA-TTS (ENSMUSG00000088495.1) 626 ENSMUSG00000088495.1 ENSMUSG00000088495 ENSMUST00000157870 Gm24398 snoRNA Interval_66476 chr16 34094068 34096277 + 0 NA intron (ENSMUSG00000061751.16, intron 33 of 48) protein_coding-intron (ENSMUSG00000061751.16, intron 34 of 59) 856 ENSMUSG00000061751.16 ENSMUSG00000061751 ENSMUST00000132569 Kalrn protein_coding Interval_158332 chr8 81592604 81593573 + 0 NA intron (ENSMUSG00000037940.17, intron 2 of 24) protein_coding-intron (ENSMUSG00000037940.17, intron 2 of 23) 73984 ENSMUSG00000090732.1 ENSMUSG00000090732 ENSMUST00000164687 4930579O11Rik processed_transcript Interval_96738 chr2 127586891 127587804 + 0 NA promoter-TSS (ENSMUSG00000034800.15) protein_coding-promoter-TSS (ENSMUSG00000034800.15) -3094 ENSMUSG00000027374.12 ENSMUSG00000027374 ENSMUST00000129066 Mrps5 protein_coding Interval_58675 chr15 36955179 36956088 + 0 NA Intergenic Intergenic 16769 ENSMUSG00000115333.1 ENSMUSG00000115333 ENSMUST00000227227 Gm34590 lincRNA Interval_174117 chrX 135652042 135652574 + 0 NA Intergenic Intergenic -24603 ENSMUSG00000031411.11 ENSMUSG00000031411 ENSMUST00000033786 Prame protein_coding Interval_161825 chr8 123027634 123028417 + 0 NA intron (ENSMUSG00000035569.17, intron 1 of 2) protein_coding-intron (ENSMUSG00000035569.17, intron 1 of 12) 14252 ENSMUSG00000035569.17 ENSMUSG00000035569 ENSMUST00000212937 Ankrd11 protein_coding Interval_114874 chr4 86632208 86633527 + 0 NA Intergenic Intergenic -1616 ENSMUSG00000081169.1 ENSMUSG00000081169 ENSMUST00000122073 Gm12551 unprocessed_pseudogene Interval_79504 chr18 32441059 32441858 + 0 NA Intergenic Intergenic -21121 ENSMUSG00000109232.1 ENSMUSG00000109232 ENSMUST00000207413 Gm44577 bidirectional_promoter_lncRNA Interval_85521 chr19 27918815 27919346 + 0 NA intron (ENSMUSG00000040929.17, intron 1 of 16) protein_coding-intron (ENSMUSG00000040929.17, intron 1 of 15) 61022 ENSMUSG00000092617.1 ENSMUSG00000092617 ENSMUST00000077493 Gm8412 processed_pseudogene Interval_90540 chr2 31040019 31040277 + 0 NA intron (ENSMUSG00000075415.13, intron 9 of 13) protein_coding-intron (ENSMUSG00000075415.13, intron 10 of 13) 57814 ENSMUSG00000026854.16 ENSMUSG00000026854 ENSMUST00000127776 Usp20 protein_coding Interval_165733 chr9 51986503 51986768 + 0 NA Intergenic Intergenic 16646 ENSMUSG00000098076.1 ENSMUSG00000098076 ENSMUST00000182467 Gm6981 processed_pseudogene Interval_126331 chr5 86763132 86763362 + 0 NA intron (ENSMUSG00000105704.1, intron 1 of 4) lincRNA-intron (ENSMUSG00000105704.1, intron 1 of 4) -17432 ENSMUSG00000054537.8 ENSMUSG00000054537 ENSMUST00000161306 Tmprss11e protein_coding Interval_135206 chr6 37503002 37503300 + 0 NA Intergenic Intergenic -36530 ENSMUSG00000038641.12 ENSMUSG00000038641 ENSMUST00000123648 Akr1d1 protein_coding Interval_87989 chr19 57610235 57611897 + 0 NA promoter-TSS (ENSMUSG00000054843.9) protein_coding-promoter-TSS (ENSMUSG00000054843.9) 32 ENSMUSG00000054843.9 ENSMUSG00000054843 ENSMUST00000077282 Atrnl1 protein_coding Interval_110043 chr3 152734572 152734955 + 0 NA intron (ENSMUSG00000039047.17, intron 3 of 7) protein_coding-intron (ENSMUSG00000039047.17, intron 3 of 11) 20640 ENSMUSG00000039047.17 ENSMUSG00000039047 ENSMUST00000160651 Pigk protein_coding Interval_170263 chr9 106533970 106534954 + 0 NA intron (ENSMUSG00000118396.2, intron 2 of 3) protein_coding-intron (ENSMUSG00000118396.2, intron 2 of 4) 10224 ENSMUSG00000118396.2 ENSMUSG00000118396 ENSMUST00000062917 Iqcf2 protein_coding Interval_80182 chr18 38071012 38071721 + 0 NA Intergenic Intergenic 47837 ENSMUSG00000118056.1 ENSMUSG00000118056 ENSMUST00000236681 Gm30093 lincRNA Interval_130525 chr5 128570571 128570784 + 0 NA Intergenic Intergenic 27279 ENSMUSG00000105059.1 ENSMUSG00000105059 ENSMUST00000199981 Gm42498 TEC Interval_10045 chr1 165320337 165321007 + 0 NA intron (ENSMUSG00000040836.15, intron 5 of 5) protein_coding-intron (ENSMUSG00000040836.15, intron 5 of 5) 24883 ENSMUSG00000040836.15 ENSMUSG00000040836 ENSMUST00000111450 Gpr161 protein_coding Interval_18103 chr10 82622372 82623819 + 0 NA promoter-TSS (ENSMUSG00000063320.11) protein_coding-promoter-TSS (ENSMUSG00000063320.11) 133 ENSMUSG00000063320.11 ENSMUSG00000063320 ENSMUST00000183416 1190007I07Rik protein_coding Interval_16119 chr10 60831020 60831994 + 0 NA promoter-TSS (ENSMUSG00000020099.8) protein_coding-promoter-TSS (ENSMUSG00000020099.8) -125 ENSMUSG00000020099.8 ENSMUSG00000020099 ENSMUST00000218637 Unc5b protein_coding Interval_18187 chr10 83508935 83509146 + 0 NA promoter-TSS (ENSMUSG00000020256.14) protein_coding-promoter-TSS (ENSMUSG00000020256.14) -13023 ENSMUSG00000020256.14 ENSMUSG00000020256 ENSMUST00000125193 Aldh1l2 protein_coding Interval_97157 chr2 131830831 131832182 + 0 NA intron (ENSMUSG00000086822.2, intron 3 of 3) lincRNA-intron (ENSMUSG00000086822.2, intron 2 of 2) 14089 ENSMUSG00000081422.1 ENSMUSG00000081422 ENSMUST00000119484 Gm14282 transcribed_processed_pseudogene Interval_9156 chr1 154149528 154150658 + 0 NA Intergenic Intergenic -32142 ENSMUSG00000100627.6 ENSMUSG00000100627 ENSMUST00000190485 A830008E24Rik lincRNA Interval_134849 chr6 32377111 32377511 + 0 NA intron (ENSMUSG00000029765.12, intron 3 of 31) protein_coding-intron (ENSMUSG00000029765.12, intron 3 of 31) 73398 ENSMUSG00000086720.1 ENSMUSG00000086720 ENSMUST00000143328 Plxna4os3 antisense Interval_36873 chr12 54855081 54855521 + 0 NA Intergenic Intergenic -7346 ENSMUSG00000113209.1 ENSMUSG00000113209 ENSMUST00000220682 1700081N11Rik bidirectional_promoter_lncRNA Interval_32930 chr11 113190671 113192821 + 0 NA intron (ENSMUSG00000087259.7, intron 1 of 2) lincRNA-intron (ENSMUSG00000087259.7, intron 1 of 2) 17923 ENSMUSG00000085421.1 ENSMUSG00000085421 ENSMUST00000130373 4732490B19Rik lincRNA Interval_111242 chr4 15850815 15851009 + 0 NA Intergenic Intergenic -29542 ENSMUSG00000081026.1 ENSMUSG00000081026 ENSMUST00000121562 Gm11855 processed_pseudogene Interval_16549 chr10 63557008 63557197 + 0 NA intron (ENSMUSG00000060843.11, intron 3 of 17) protein_coding-intron (ENSMUSG00000060843.11, intron 2 of 16) -135313 ENSMUSG00000048185.5 ENSMUSG00000048185 ENSMUST00000054760 Gm7075 protein_coding Interval_72830 chr17 32434677 32436180 + 0 NA Intergenic Intergenic -14453 ENSMUSG00000079563.10 ENSMUSG00000079563 ENSMUST00000236703 Pglyrp2 protein_coding Interval_83100 chr18 81280915 81281161 + 0 NA intron (ENSMUSG00000117717.1, intron 3 of 4) lincRNA-intron (ENSMUSG00000117717.1, intron 3 of 4) 16347 ENSMUSG00000117717.1 ENSMUSG00000117717 ENSMUST00000236674 Gm30192 lincRNA Interval_62219 chr15 88905993 88906713 + 0 NA intron (ENSMUSG00000022388.14, intron 12 of 12) protein_coding-intron (ENSMUSG00000022388.14, intron 12 of 12) -14828 ENSMUSG00000093394.1 ENSMUSG00000093394 ENSMUST00000176338 Gm20621 sense_overlapping Interval_44430 chr13 44783897 44785343 + 0 NA intron (ENSMUSG00000038518.15, intron 2 of 4) protein_coding-intron (ENSMUSG00000038518.15, intron 2 of 18) 53250 ENSMUSG00000038518.15 ENSMUSG00000038518 ENSMUST00000173003 Jarid2 protein_coding Interval_114973 chr4 87924034 87924266 + 0 NA intron (ENSMUSG00000028496.17, intron 2 of 4) protein_coding-intron (ENSMUSG00000028496.17, intron 2 of 10) -109351 ENSMUSG00000084809.1 ENSMUSG00000084809 ENSMUST00000130576 Gm12631 antisense Interval_6285 chr1 105362520 105363147 + 0 NA Intergenic Intergenic 6070 ENSMUSG00000097482.2 ENSMUSG00000097482 ENSMUST00000186958 Gm17634 antisense Interval_108671 chr3 129980237 129980577 + 0 NA Intergenic Intergenic 10090 ENSMUSG00000001052.15 ENSMUSG00000001052 ENSMUST00000168675 Sec24b protein_coding Interval_127542 chr5 104982105 104982779 + 0 NA intron (ENSMUSG00000029299.14, intron 1 of 15) protein_coding-intron (ENSMUSG00000029299.14, intron 1 of 15) -4608 ENSMUSG00000029299.14 ENSMUSG00000029299 ENSMUST00000130644 Abcg3 protein_coding Interval_51181 chr14 24507315 24508900 + 0 NA Intergenic Intergenic 17389 ENSMUSG00000025290.17 ENSMUSG00000025290 ENSMUST00000224699 Rps24 protein_coding Interval_141244 chr6 126470723 126471097 + 0 NA Intergenic Intergenic 64502 ENSMUSG00000045534.4 ENSMUSG00000045534 ENSMUST00000060972 Kcna5 protein_coding Interval_147657 chr7 70776654 70777989 + 0 NA Intergenic Intergenic 24905 ENSMUSG00000089401.1 ENSMUSG00000089401 ENSMUST00000158776 Gm24880 rRNA Interval_60152 chr15 66543627 66543818 + 0 NA intron (ENSMUSG00000036944.6, intron 5 of 9) protein_coding-intron (ENSMUSG00000036944.6, intron 5 of 9) 17381 ENSMUSG00000036944.6 ENSMUSG00000036944 ENSMUST00000048372 Tmem71 protein_coding Interval_171330 chr9 116426414 116428651 + 0 NA Intergenic Intergenic 96364 ENSMUSG00000110752.1 ENSMUSG00000110752 ENSMUST00000217456 D730003K21Rik lincRNA Interval_10117 chr1 165891776 165892661 + 0 NA promoter-TSS (ENSMUSG00000026565.18) protein_coding-promoter-TSS (ENSMUSG00000026565.18) -12058 ENSMUSG00000026565.18 ENSMUSG00000026565 ENSMUST00000176800 Pou2f1 protein_coding Interval_42518 chr13 14411020 14411402 + 0 NA intron (ENSMUSG00000021301.9, intron 1 of 2) protein_coding-intron (ENSMUSG00000021301.9, intron 2 of 28) -31638 ENSMUSG00000113981.1 ENSMUSG00000113981 ENSMUST00000222578 Gm47011 TEC Interval_151691 chr7 126073207 126073492 + 0 NA intron (ENSMUSG00000046182.8, intron 1 of 6) protein_coding-intron (ENSMUSG00000046182.8, intron 1 of 6) -8902 ENSMUSG00000108376.1 ENSMUSG00000108376 ENSMUST00000206586 Gm44874 TEC Interval_61021 chr15 78820529 78820736 + 0 NA promoter-TSS (ENSMUSG00000116499.1) processed_pseudogene-promoter-TSS (ENSMUSG00000116499.1) -178 ENSMUSG00000116499.1 ENSMUSG00000116499 ENSMUST00000230007 Gm7318 processed_pseudogene Interval_89626 chr2 23508655 23509221 + 0 NA promoter-TSS (ENSMUSG00000081519.1) processed_pseudogene-promoter-TSS (ENSMUSG00000081519.1) 78 ENSMUSG00000081519.1 ENSMUSG00000081519 ENSMUST00000117500 Gm13331 processed_pseudogene Interval_54962 chr14 76515353 76516312 + 0 NA Intergenic Intergenic -10760 ENSMUSG00000115092.1 ENSMUSG00000115092 ENSMUST00000227784 E130202H07Rik lincRNA Interval_172559 chrX 36772473 36773288 + 0 NA intron (ENSMUSG00000037636.6, intron 2 of 2) protein_coding-intron (ENSMUSG00000037636.6, intron 3 of 4) -3739 ENSMUSG00000064530.1 ENSMUSG00000064530 ENSMUST00000082596 Gm23613 snoRNA Interval_139195 chr6 97082100 97083034 + 0 NA Intergenic Intergenic -22174 ENSMUSG00000046500.8 ENSMUSG00000046500 ENSMUST00000203930 Tafa4 protein_coding Interval_48803 chr13 103459516 103460882 + 0 NA Intergenic Intergenic -39117 ENSMUSG00000087860.1 ENSMUSG00000087860 ENSMUST00000157235 Gm24441 misc_RNA Interval_104302 chr3 63142749 63143276 + 0 NA Intergenic Intergenic -9205 ENSMUSG00000089175.1 ENSMUSG00000089175 ENSMUST00000158550 Gm22433 scaRNA Interval_119009 chr4 134982036 134983327 + 0 NA Intergenic Intergenic 51779 ENSMUSG00000028821.8 ENSMUSG00000028821 ENSMUST00000144037 Syf2 protein_coding Interval_149679 chr7 100590816 100591686 + 0 NA exon (ENSMUSG00000030706.17, exon 1 of 7) protein_coding-exon (ENSMUSG00000030706.17, exon 1 of 7) -8176 ENSMUSG00000030706.17 ENSMUSG00000030706 ENSMUST00000127253 Mrpl48 protein_coding Interval_66268 chr16 32741765 32742015 + 0 NA intron (ENSMUSG00000079620.13, intron 1 of 24) protein_coding-intron (ENSMUSG00000079620.13, intron 1 of 26) 15224 ENSMUSG00000098225.1 ENSMUSG00000098225 ENSMUST00000182938 Gm9556 processed_pseudogene Interval_120451 chr4 148700779 148701560 + 0 NA Intergenic Intergenic -12534 ENSMUSG00000087273.1 ENSMUSG00000087273 ENSMUST00000139895 Gm13203 lincRNA Interval_141276 chr6 126778147 126778440 + 0 NA Intergenic Intergenic 32351 ENSMUSG00000118420.1 ENSMUSG00000118420 ENSMUST00000238440 Gm29788 transcribed_unitary_pseudogene Interval_77542 chr17 91203684 91204112 + 0 NA Intergenic Intergenic -32913 ENSMUSG00000043346.9 ENSMUSG00000043346 ENSMUST00000057074 Gm6741 processed_pseudogene Interval_2033 chr1 36013406 36014690 + 0 NA Intergenic Intergenic 2976 ENSMUSG00000104201.1 ENSMUSG00000104201 ENSMUST00000192017 4930535G08Rik lincRNA Interval_2118 chr1 36545984 36547658 + 0 NA exon (ENSMUSG00000079610.9, exon 1 of 1) protein_coding-exon (ENSMUSG00000079610.9, exon 1 of 1) 398 ENSMUSG00000079610.9 ENSMUSG00000079610 ENSMUST00000208269 Ankrd39 protein_coding Interval_97774 chr2 143951849 143952450 + 0 NA intron (ENSMUSG00000027422.15, intron 1 of 5) protein_coding-intron (ENSMUSG00000027422.15, intron 19 of 23) 5496 ENSMUSG00000027422.15 ENSMUSG00000027422 ENSMUST00000037875 Rrbp1 protein_coding Interval_106718 chr3 99535746 99536052 + 0 NA Intergenic Intergenic 9163 ENSMUSG00000083938.2 ENSMUSG00000083938 ENSMUST00000118852 Gm12448 processed_pseudogene Interval_14445 chr10 33870392 33871661 + 0 NA intron (ENSMUSG00000069668.4, intron 5 of 6) protein_coding-intron (ENSMUSG00000069668.4, intron 4 of 5) 1992 ENSMUSG00000112447.1 ENSMUSG00000112447 ENSMUST00000217760 Gm47935 processed_pseudogene Interval_153525 chr8 3147443 3147721 + 0 NA intron (ENSMUSG00000005534.10, intron 3 of 3) protein_coding-intron (ENSMUSG00000005534.10, intron 3 of 3) 8484 ENSMUSG00000109369.2 ENSMUSG00000109369 ENSMUST00000209168 Vmn2r-ps88 unprocessed_pseudogene Interval_35223 chr12 18458424 18459709 + 0 NA Intergenic Intergenic -46656 ENSMUSG00000113436.1 ENSMUSG00000113436 ENSMUST00000222355 Gm48392 processed_pseudogene Interval_169057 chr9 91355604 91356420 + 0 NA Intergenic Intergenic -5059 ENSMUSG00000102406.1 ENSMUSG00000102406 ENSMUST00000193867 A730094K22Rik TEC Interval_131223 chr5 135898151 135898538 + 0 NA Intergenic Intergenic -1858 ENSMUSG00000105047.1 ENSMUSG00000105047 ENSMUST00000196247 Gm42533 processed_pseudogene Interval_95563 chr2 112289100 112289734 + 0 NA intron (ENSMUSG00000027130.15, intron 1 of 24) protein_coding-intron (ENSMUSG00000027130.15, intron 1 of 24) 23103 ENSMUSG00000096764.1 ENSMUSG00000096764 ENSMUST00000141047 Gm21985 protein_coding Interval_151947 chr7 127707779 127709132 + 0 NA promoter-TSS (ENSMUSG00000076454.1) miRNA-promoter-TSS (ENSMUSG00000076454.1) -32 ENSMUSG00000076454.1 ENSMUSG00000076454 ENSMUST00000103255 Mir762 miRNA Interval_160666 chr8 111480748 111481467 + 0 NA intron (ENSMUSG00000031959.15, intron 14 of 26) protein_coding-intron (ENSMUSG00000031959.15, intron 14 of 26) 9646 ENSMUSG00000031959.15 ENSMUSG00000031959 ENSMUST00000212327 Wdr59 protein_coding Interval_19271 chr10 95927398 95927617 + 0 NA Intergenic Intergenic -13143 ENSMUSG00000036499.9 ENSMUSG00000036499 ENSMUST00000218517 Eea1 protein_coding Interval_146926 chr7 55926675 55927089 + 0 NA TTS (ENSMUSG00000108701.1) TEC-TTS (ENSMUSG00000108701.1) 2026 ENSMUSG00000108701.1 ENSMUSG00000108701 ENSMUST00000206417 Gm44616 TEC Interval_148062 chr7 78939170 78939823 + 0 NA Intergenic Intergenic -15610 ENSMUSG00000108670.1 ENSMUSG00000108670 ENSMUST00000206812 Gm44815 TEC Interval_123027 chr5 28603874 28604732 + 0 NA intron (ENSMUSG00000097726.7, intron 2 of 6) antisense-intron (ENSMUSG00000097726.7, intron 2 of 6) 27030 ENSMUSG00000104587.1 ENSMUSG00000104587 ENSMUST00000197020 Gm43161 TEC Interval_47692 chr13 91365428 91365675 + 0 NA Intergenic Intergenic 8743 ENSMUSG00000099340.1 ENSMUSG00000099340 ENSMUST00000188207 Gm29540 sense_intronic Interval_49922 chr13 118336113 118336583 + 0 NA Intergenic Intergenic -50282 ENSMUSG00000097411.2 ENSMUSG00000097411 ENSMUST00000181168 B430218F22Rik antisense Interval_17449 chr10 76828757 76829189 + 0 NA intron (ENSMUSG00000001120.15, intron 2 of 7) protein_coding-intron (ENSMUSG00000001120.15, intron 2 of 15) -40551 ENSMUSG00000001120.15 ENSMUSG00000001120 ENSMUST00000165571 Pcbp3 protein_coding Interval_83297 chr18 83859202 83859659 + 0 NA Intergenic Intergenic -31824 ENSMUSG00000118024.1 ENSMUSG00000118024 ENSMUST00000237374 Gm50419 lincRNA Interval_168620 chr9 84304525 84304791 + 0 NA Intergenic Intergenic 81897 ENSMUSG00000111616.1 ENSMUSG00000111616 ENSMUST00000215826 Gm18487 processed_pseudogene Interval_129298 chr5 118760930 118761822 + 0 NA exon (ENSMUSG00000018076.12, exon 30 of 31) protein_coding-exon (ENSMUSG00000018076.12, exon 30 of 31) 10989 ENSMUSG00000018076.12 ENSMUSG00000018076 ENSMUST00000202787 Med13l protein_coding Interval_52895 chr14 51902880 51905007 + 0 NA Intergenic Intergenic 9437 ENSMUSG00000004558.15 ENSMUSG00000004558 ENSMUST00000228173 Ndrg2 protein_coding Interval_66278 chr16 32825367 32826126 + 0 NA promoter-TSS (ENSMUSG00000035629.19) protein_coding-promoter-TSS (ENSMUSG00000035629.19) 10825 ENSMUSG00000035629.19 ENSMUSG00000035629 ENSMUST00000149621 Rubcn protein_coding Interval_49497 chr13 112439047 112441070 + 0 NA Intergenic Intergenic -3462 ENSMUSG00000114468.1 ENSMUSG00000114468 ENSMUST00000225524 Gm48879 lincRNA Interval_49169 chr13 109073253 109074705 + 0 NA intron (ENSMUSG00000021699.17, intron 2 of 15) protein_coding-intron (ENSMUSG00000021699.17, intron 3 of 16) 213813 ENSMUSG00000021699.17 ENSMUSG00000021699 ENSMUST00000155459 Pde4d protein_coding Interval_86521 chr19 41360161 41360913 + 0 NA intron (ENSMUSG00000025017.10, intron 2 of 8) protein_coding-intron (ENSMUSG00000025017.10, intron 2 of 16) 24565 ENSMUSG00000025017.10 ENSMUSG00000025017 ENSMUST00000235978 Pik3ap1 protein_coding Interval_55426 chr14 87110329 87111419 + 0 NA intron (ENSMUSG00000022021.14, intron 1 of 15) protein_coding-intron (ENSMUSG00000022021.14, intron 2 of 27) 30361 ENSMUSG00000022021.14 ENSMUSG00000022021 ENSMUST00000226134 Diaph3 protein_coding Interval_35870 chr12 31395583 31395830 + 0 NA intron (ENSMUSG00000001225.12, intron 1 of 6) protein_coding-intron (ENSMUSG00000001225.12, intron 1 of 6) -23142 ENSMUSG00000091040.1 ENSMUSG00000091040 ENSMUST00000163721 Gm9359 processed_pseudogene Interval_153038 chr7 141010452 141011243 + 0 NA promoter-TSS (ENSMUSG00000025492.6) protein_coding-promoter-TSS (ENSMUSG00000025492.6) -77 ENSMUSG00000025492.6 ENSMUSG00000025492 ENSMUST00000026565 Ifitm3 protein_coding Interval_99230 chr2 158263622 158264135 + 0 NA intron (ENSMUSG00000052922.9, intron 5 of 14) protein_coding-intron (ENSMUSG00000052922.9, intron 5 of 14) 5784 ENSMUSG00000052922.9 ENSMUSG00000052922 ENSMUST00000065039 Bpi protein_coding Interval_19756 chr10 108531070 108531851 + 0 NA intron (ENSMUSG00000035864.14, intron 10 of 11) protein_coding-intron (ENSMUSG00000035864.14, intron 9 of 10) 48810 ENSMUSG00000112065.1 ENSMUSG00000112065 ENSMUST00000217917 Gm47466 processed_pseudogene Interval_152428 chr7 132994057 132994260 + 0 NA intron (ENSMUSG00000030970.16, intron 4 of 8) protein_coding-intron (ENSMUSG00000030970.16, intron 6 of 10) -10606 ENSMUSG00000085663.1 ENSMUSG00000085663 ENSMUST00000131085 Gm15718 antisense Interval_168117 chr9 77186840 77187355 + 0 NA intron (ENSMUSG00000032355.16, intron 3 of 6) protein_coding-intron (ENSMUSG00000032355.16, intron 4 of 7) 89906 ENSMUSG00000099138.1 ENSMUSG00000099138 ENSMUST00000183550 Gm5746 processed_pseudogene Interval_111589 chr4 24121754 24121986 + 0 NA Intergenic Intergenic -116230 ENSMUSG00000083154.1 ENSMUSG00000083154 ENSMUST00000117711 Gm11892 processed_pseudogene Interval_2312 chr1 37965316 37966373 + 0 NA Intergenic Intergenic -8123 ENSMUSG00000089141.1 ENSMUSG00000089141 ENSMUST00000158516 Gm23409 misc_RNA Interval_49273 chr13 110039000 110039399 + 0 NA Intergenic Intergenic 135390 ENSMUSG00000084651.1 ENSMUSG00000084651 ENSMUST00000122702 Mir1904 miRNA Interval_149541 chr7 99450863 99451495 + 0 NA intron (ENSMUSG00000035314.10, intron 7 of 15) protein_coding-intron (ENSMUSG00000035314.10, intron 10 of 17) -17784 ENSMUSG00000035298.8 ENSMUSG00000035298 ENSMUST00000152424 Klhl35 protein_coding Interval_20438 chr10 117628824 117630011 + 0 NA promoter-TSS (ENSMUSG00000020183.11) protein_coding-promoter-TSS (ENSMUSG00000020183.11) 15012 ENSMUSG00000112476.1 ENSMUSG00000112476 ENSMUST00000217828 Gm32365 lincRNA Interval_39639 chr12 91735996 91736851 + 0 NA intron (ENSMUSG00000020961.15, intron 3 of 3) protein_coding-intron (ENSMUSG00000020961.15, intron 3 of 6) 34747 ENSMUSG00000020961.15 ENSMUSG00000020961 ENSMUST00000166008 Ston2 protein_coding Interval_109816 chr3 148027230 148028143 + 0 NA Intergenic Intergenic -102558 ENSMUSG00000106285.1 ENSMUSG00000106285 ENSMUST00000196226 Gm43574 processed_transcript Interval_77064 chr17 86161605 86162835 + 0 NA Intergenic Intergenic -13355 ENSMUSG00000117546.1 ENSMUSG00000117546 ENSMUST00000234087 AC154542.1 TEC Interval_49368 chr13 111520568 111520913 + 0 NA intron (ENSMUSG00000116016.1, intron 1 of 7) protein_coding-intron (ENSMUSG00000116016.1, intron 1 of 7) 29171 ENSMUSG00000085634.2 ENSMUSG00000085634 ENSMUST00000132880 Gm15290 lincRNA Interval_64892 chr16 17022768 17023263 + 0 NA intron (ENSMUSG00000063358.17, intron 3 of 8) protein_coding-intron (ENSMUSG00000063358.17, intron 3 of 8) -12323 ENSMUSG00000063358.17 ENSMUSG00000063358 ENSMUST00000232480 Mapk1 protein_coding Interval_11688 chr1 184704844 184705527 + 0 NA Intergenic Intergenic -7312 ENSMUSG00000092578.1 ENSMUSG00000092578 ENSMUST00000172500 4930488B22Rik lincRNA Interval_172121 chrX 7750333 7751271 + 0 NA promoter-TSS (ENSMUSG00000031150.13) protein_coding-promoter-TSS (ENSMUSG00000031150.13) -1328 ENSMUSG00000082617.3 ENSMUSG00000082617 ENSMUST00000121084 Smt3h2-ps processed_pseudogene Interval_131766 chr5 139750557 139751128 + 0 NA TTS (ENSMUSG00000029547.10) protein_coding-TTS (ENSMUSG00000029547.10) 17101 ENSMUSG00000098574.1 ENSMUSG00000098574 ENSMUST00000184414 Mir7037 miRNA Interval_97249 chr2 132633898 132635642 + 0 NA intron (ENSMUSG00000074783.10, intron 4 of 5) lincRNA-intron (ENSMUSG00000074783.10, intron 2 of 3) -27472 ENSMUSG00000081445.1 ENSMUSG00000081445 ENSMUST00000121008 Rpl23a-ps4 processed_pseudogene Interval_21407 chr10 128409176 128410244 + 0 NA promoter-TSS (ENSMUSG00000025374.13) protein_coding-promoter-TSS (ENSMUSG00000025374.13) -78 ENSMUSG00000025374.13 ENSMUSG00000025374 ENSMUST00000171370 Nabp2 protein_coding Interval_92359 chr2 59239577 59240953 + 0 NA intron (ENSMUSG00000026991.20, intron 1 of 20) protein_coding-intron (ENSMUSG00000026991.20, intron 2 of 21) 78338 ENSMUSG00000026991.20 ENSMUSG00000026991 ENSMUST00000124127 Pkp4 protein_coding Interval_53841 chr14 62580560 62581555 + 0 NA intron (ENSMUSG00000035184.15, intron 2 of 2) protein_coding-intron (ENSMUSG00000035184.15, intron 2 of 3) -14136 ENSMUSG00000100486.7 ENSMUSG00000100486 ENSMUST00000209021 Gm4131 protein_coding Interval_54909 chr14 76164331 76165672 + 0 NA Intergenic Intergenic 54110 ENSMUSG00000022009.1 ENSMUSG00000022009 ENSMUST00000022586 Nufip1 protein_coding Interval_97137 chr2 131545496 131547181 + 0 NA exon (ENSMUSG00000027335.9, exon 2 of 2) protein_coding-exon (ENSMUSG00000027335.9, exon 2 of 2) -15276 ENSMUSG00000087524.1 ENSMUSG00000087524 ENSMUST00000146049 Gm14285 antisense Interval_76110 chr17 75074848 75076096 + 0 NA intron (ENSMUSG00000001870.16, intron 3 of 34) protein_coding-intron (ENSMUSG00000001870.16, intron 3 of 33) 69904 ENSMUSG00000001870.16 ENSMUSG00000001870 ENSMUST00000135750 Ltbp1 protein_coding Interval_15778 chr10 56406181 56407247 + 0 NA Intergenic Intergenic -25267 ENSMUSG00000112833.1 ENSMUSG00000112833 ENSMUST00000218830 Gm36595 lincRNA Interval_46624 chr13 67696354 67697146 + 0 NA Intergenic Intergenic -2332 ENSMUSG00000097371.1 ENSMUSG00000097371 ENSMUST00000181006 Gm26875 processed_pseudogene Interval_11890 chr1 186770101 186770896 + 0 NA Intergenic Intergenic 21102 ENSMUSG00000097784.1 ENSMUSG00000097784 ENSMUST00000180869 A430105J06Rik lincRNA Interval_14345 chr10 31206357 31206601 + 0 NA Intergenic Intergenic -2794 ENSMUSG00000111396.1 ENSMUSG00000111396 ENSMUST00000213449 Gm7333 processed_pseudogene Interval_37411 chr12 67657609 67658129 + 0 NA TTS (ENSMUSG00000113657.1) processed_pseudogene-TTS (ENSMUSG00000113657.1) 6484 ENSMUSG00000114010.1 ENSMUSG00000114010 ENSMUST00000222891 Gm47432 lincRNA Interval_50057 chr13 120319938 120320483 + 0 NA Intergenic Intergenic 3332 ENSMUSG00000095821.2 ENSMUSG00000095821 ENSMUST00000178349 Tcstv3 protein_coding Interval_125503 chr5 67756308 67756539 + 0 NA intron (ENSMUSG00000037685.15, intron 7 of 16) protein_coding-intron (ENSMUSG00000037685.15, intron 15 of 36) 2907 ENSMUSG00000106859.1 ENSMUSG00000106859 ENSMUST00000201074 Gm42737 TEC Interval_160303 chr8 107890834 107891109 + 0 NA Intergenic Intergenic 21286 ENSMUSG00000110625.1 ENSMUSG00000110625 ENSMUST00000212462 5033426E14Rik lincRNA Interval_68981 chr16 89918599 89919103 + 0 NA exon (ENSMUSG00000002489.16, exon 1 of 3) protein_coding-exon (ENSMUSG00000002489.16, exon 1 of 3) -123569 ENSMUSG00000002489.16 ENSMUSG00000002489 ENSMUST00000136760 Tiam1 protein_coding Interval_144098 chr7 19405442 19406210 + 0 NA intron (ENSMUSG00000030399.2, intron 1 of 4) protein_coding-intron (ENSMUSG00000030399.2, intron 1 of 4) -5199 ENSMUSG00000030399.2 ENSMUSG00000030399 ENSMUST00000003643 Ckm protein_coding Interval_26749 chr11 60199709 60200528 + 0 NA TTS (ENSMUSG00000062115.15) protein_coding-TTS (ENSMUSG00000062115.15) 499 ENSMUSG00000098547.1 ENSMUSG00000098547 ENSMUST00000183719 Mir6921 miRNA Interval_150444 chr7 110682670 110683617 + 0 NA Intergenic Intergenic 16591 ENSMUSG00000109700.1 ENSMUSG00000109700 ENSMUST00000210822 Gm21123 lincRNA Interval_22738 chr11 14230098 14231100 + 0 NA Intergenic Intergenic -51558 ENSMUSG00000085452.1 ENSMUSG00000085452 ENSMUST00000126260 4930554G24Rik lincRNA Interval_94801 chr2 94436958 94438623 + 0 NA intron (ENSMUSG00000027193.12, intron 1 of 7) protein_coding-intron (ENSMUSG00000027193.12, intron 1 of 13) 346 ENSMUSG00000027193.12 ENSMUSG00000027193 ENSMUST00000150930 Api5 protein_coding Interval_35086 chr12 17221682 17222450 + 0 NA Intergenic Intergenic -11546 ENSMUSG00000113368.1 ENSMUSG00000113368 ENSMUST00000223362 Gm10054 processed_pseudogene Interval_40744 chr12 108087783 108088949 + 0 NA Intergenic Intergenic 74643 ENSMUSG00000056770.15 ENSMUSG00000056770 ENSMUST00000125916 Setd3 protein_coding Interval_134518 chr6 29297834 29298069 + 0 NA Intergenic Intergenic 16808 ENSMUSG00000079652.8 ENSMUSG00000079652 ENSMUST00000167608 Fam71f2 protein_coding Interval_47318 chr13 81267413 81268156 + 0 NA intron (ENSMUSG00000069170.14, intron 3 of 7) protein_coding-intron (ENSMUSG00000069170.14, intron 85 of 89) -27000 ENSMUSG00000114939.1 ENSMUSG00000114939 ENSMUST00000225657 Gm48566 TEC Interval_159413 chr8 94433489 94434621 + 0 NA promoter-TSS (ENSMUSG00000074151.13) protein_coding-promoter-TSS (ENSMUSG00000074151.13) 111 ENSMUSG00000097194.2 ENSMUSG00000097194 ENSMUST00000180445 9330175E14Rik lincRNA Interval_125024 chr5 63943968 63944350 + 0 NA intron (ENSMUSG00000047881.14, intron 1 of 7) protein_coding-intron (ENSMUSG00000047881.14, intron 1 of 7) -13245 ENSMUSG00000047881.14 ENSMUSG00000047881 ENSMUST00000127314 Rell1 protein_coding Interval_69207 chr16 91348357 91349083 + 0 NA TTS (ENSMUSG00000065811.1) snRNA-TTS (ENSMUSG00000065811.1) 1064 ENSMUSG00000065811.1 ENSMUSG00000065811 ENSMUST00000083877 Gm24695 snRNA Interval_69159 chr16 91050609 91051003 + 0 NA intron (ENSMUSG00000085398.1, intron 1 of 1) antisense-intron (ENSMUSG00000085398.1, intron 1 of 1) 6150 ENSMUSG00000085398.1 ENSMUSG00000085398 ENSMUST00000147848 4931406G06Rik antisense Interval_143569 chr7 12885850 12886189 + 0 NA intron (ENSMUSG00000060397.6, intron 3 of 3) protein_coding-intron (ENSMUSG00000060397.6, intron 2 of 2) 4842 ENSMUSG00000060397.6 ENSMUSG00000060397 ENSMUST00000144578 Zfp128 protein_coding Interval_169034 chr9 90652390 90652843 + 0 NA Intergenic Intergenic 80908 ENSMUSG00000099366.1 ENSMUSG00000099366 ENSMUST00000189539 Gm2497 processed_pseudogene Interval_131874 chr5 140523122 140524961 + 0 NA exon (ENSMUSG00000036599.10, exon 2 of 2) protein_coding-exon (ENSMUSG00000036599.10, exon 2 of 2) 18466 ENSMUSG00000036599.10 ENSMUSG00000036599 ENSMUST00000124142 Chst12 protein_coding Interval_163062 chr9 14921912 14922509 + 0 NA Intergenic Intergenic -6189 ENSMUSG00000110995.1 ENSMUSG00000110995 ENSMUST00000216115 Gm18789 processed_pseudogene Interval_55515 chr14 89896657 89898981 + 0 NA exon (ENSMUSG00000062093.5, exon 1 of 1) transcribed_processed_pseudogene-exon (ENSMUSG00000062093.5, exon 1 of 1) 1628 ENSMUSG00000062093.5 ENSMUSG00000062093 ENSMUST00000081204 Gm10110 transcribed_processed_pseudogene Interval_154080 chr8 12528034 12529763 + 0 NA Intergenic Intergenic 25999 ENSMUSG00000109582.1 ENSMUSG00000109582 ENSMUST00000211062 4933439N14Rik lincRNA Interval_63108 chr15 99120267 99120999 + 0 NA Intergenic Intergenic -5283 ENSMUSG00000051934.5 ENSMUSG00000051934 ENSMUST00000229663 Spats2 protein_coding Interval_49669 chr13 113879964 113881535 + 0 NA intron (ENSMUSG00000042348.10, intron 1 of 3) protein_coding-intron (ENSMUSG00000042348.10, intron 1 of 4) 86156 ENSMUSG00000042348.10 ENSMUSG00000042348 ENSMUST00000224068 Arl15 protein_coding Interval_134566 chr6 29631396 29633612 + 0 NA Intergenic Intergenic -60985 ENSMUSG00000012535.14 ENSMUSG00000012535 ENSMUST00000166844 Tnpo3 protein_coding Interval_55394 chr14 86562852 86563036 + 0 NA Intergenic Intergenic -50873 ENSMUSG00000115776.1 ENSMUSG00000115776 ENSMUST00000228733 Gm49158 processed_pseudogene Interval_33648 chr11 117732002 117732551 + 0 NA exon (ENSMUSG00000025571.13, exon 6 of 22) protein_coding-exon (ENSMUSG00000025571.13, exon 6 of 22) -16955 ENSMUSG00000025571.13 ENSMUSG00000025571 ENSMUST00000141287 Tnrc6c protein_coding Interval_12808 chr10 5749721 5749966 + 0 NA Intergenic Intergenic 14024 ENSMUSG00000110983.1 ENSMUSG00000110983 ENSMUST00000213369 Gm47679 processed_pseudogene Interval_118729 chr4 133415088 133415399 + 0 NA intron (ENSMUSG00000028854.9, intron 2 of 11) protein_coding-intron (ENSMUSG00000028854.9, intron 2 of 11) -1063 ENSMUSG00000028854.9 ENSMUSG00000028854 ENSMUST00000141658 Slc9a1 protein_coding Interval_174688 chrX 162957896 162958323 + 0 NA intron (ENSMUSG00000031360.14, intron 2 of 2) protein_coding-intron (ENSMUSG00000031360.14, intron 13 of 18) 6490 ENSMUSG00000040808.4 ENSMUSG00000040808 ENSMUST00000038769 S100g protein_coding Interval_109552 chr3 144411004 144414070 + 0 NA Intergenic Intergenic 15135 ENSMUSG00000106416.1 ENSMUSG00000106416 ENSMUST00000198953 Gm5857 processed_pseudogene Interval_164824 chr9 42243374 42243590 + 0 NA Intergenic Intergenic 20773 ENSMUSG00000032018.14 ENSMUSG00000032018 ENSMUST00000217513 Sc5d protein_coding Interval_64803 chr16 15927334 15927632 + 0 NA intron (ENSMUSG00000041974.10, intron 11 of 16) protein_coding-intron (ENSMUSG00000041974.10, intron 11 of 19) 39067 ENSMUSG00000071637.5 ENSMUSG00000071637 ENSMUST00000210772 Cebpd protein_coding Interval_91591 chr2 44221886 44222842 + 0 NA intron (ENSMUSG00000049744.15, intron 11 of 14) protein_coding-intron (ENSMUSG00000049744.15, intron 11 of 13) -157040 ENSMUSG00000085089.1 ENSMUSG00000085089 ENSMUST00000139948 Arhgap15os antisense Interval_67369 chr16 48150057 48150294 + 0 NA intron (ENSMUSG00000116755.1, intron 1 of 5) lincRNA-intron (ENSMUSG00000116755.1, intron 1 of 5) 8324 ENSMUSG00000116755.1 ENSMUSG00000116755 ENSMUST00000232155 6430553K19Rik lincRNA Interval_88547 chr2 6043240 6043483 + 0 NA intron (ENSMUSG00000043241.14, intron 7 of 10) protein_coding-intron (ENSMUSG00000043241.14, intron 18 of 21) -7066 ENSMUSG00000043241.14 ENSMUSG00000043241 ENSMUST00000144901 Upf2 protein_coding Interval_50396 chr14 12435913 12437906 + 0 NA intron (ENSMUSG00000054423.14, intron 19 of 19) protein_coding-intron (ENSMUSG00000054423.14, intron 25 of 28) -9268 ENSMUSG00000084541.1 ENSMUSG00000084541 ENSMUST00000122592 n-R5s45 rRNA Interval_102126 chr3 18223019 18223832 + 0 NA intron (ENSMUSG00000039519.6, intron 1 of 5) protein_coding-intron (ENSMUSG00000039519.6, intron 1 of 5) 19913 ENSMUSG00000039519.6 ENSMUSG00000039519 ENSMUST00000035625 Cyp7b1 protein_coding Interval_96254 chr2 120991244 120991718 + 0 NA intron (ENSMUSG00000054484.14, intron 7 of 12) protein_coding-intron (ENSMUSG00000054484.14, intron 8 of 13) 7111 ENSMUSG00000054484.14 ENSMUSG00000054484 ENSMUST00000135599 Tmem62 protein_coding Interval_90503 chr2 30836337 30836906 + 0 NA intron (ENSMUSG00000039476.13, intron 1 of 3) protein_coding-intron (ENSMUSG00000039476.13, intron 1 of 3) -8367 ENSMUSG00000039483.10 ENSMUSG00000039483 ENSMUST00000147414 Asb6 protein_coding Interval_18637 chr10 88738179 88740112 + 0 NA intron (ENSMUSG00000060904.14, intron 4 of 5) protein_coding-intron (ENSMUSG00000060904.14, intron 4 of 4) -8044 ENSMUSG00000069540.4 ENSMUSG00000069540 ENSMUST00000092231 Gm4925 transcribed_processed_pseudogene Interval_64661 chr16 13975392 13977724 + 0 NA Intergenic Intergenic -7101 ENSMUSG00000089207.1 ENSMUSG00000089207 ENSMUST00000158582 Gm26213 rRNA Interval_29787 chr11 86806877 86808148 + 0 NA promoter-TSS (ENSMUSG00000018425.18) protein_coding-promoter-TSS (ENSMUSG00000018425.18) -6424 ENSMUSG00000018425.18 ENSMUSG00000018425 ENSMUST00000131798 Dhx40 protein_coding Interval_106395 chr3 95893564 95894502 + 0 NA promoter-TSS (ENSMUSG00000015750.15) protein_coding-promoter-TSS (ENSMUSG00000015750.15) -432 ENSMUSG00000015750.15 ENSMUSG00000015750 ENSMUST00000197232 Aph1a protein_coding Interval_127468 chr5 104154060 104154391 + 0 NA Intergenic Intergenic -16487 ENSMUSG00000053268.7 ENSMUSG00000053268 ENSMUST00000112771 Dspp protein_coding Interval_33658 chr11 117772868 117773312 + 0 NA promoter-TSS (ENSMUSG00000025572.17) protein_coding-promoter-TSS (ENSMUSG00000025572.17) 9108 ENSMUSG00000025572.17 ENSMUSG00000025572 ENSMUST00000127227 Tmc6 protein_coding Interval_5782 chr1 91770424 91771179 + 0 NA Intergenic Intergenic -30669 ENSMUSG00000007805.4 ENSMUSG00000007805 ENSMUST00000186075 Twist2 protein_coding Interval_96018 chr2 119208247 119209436 + 0 NA promoter-TSS (ENSMUSG00000034278.3) protein_coding-promoter-TSS (ENSMUSG00000034278.3) -2801 ENSMUSG00000068580.11 ENSMUSG00000068580 ENSMUST00000147584 Zfyve19 protein_coding Interval_85885 chr19 32726385 32728381 + 0 NA intron (ENSMUSG00000013662.6, intron 1 of 11) protein_coding-intron (ENSMUSG00000013662.6, intron 1 of 9) -32513 ENSMUSG00000013662.6 ENSMUSG00000013662 ENSMUST00000237933 Atad1 protein_coding Interval_34404 chr12 3887489 3887738 + 0 NA intron (ENSMUSG00000020661.15, intron 1 of 2) protein_coding-intron (ENSMUSG00000020661.15, intron 6 of 22) -25369 ENSMUSG00000073242.4 ENSMUSG00000073242 ENSMUST00000144896 Dnmt3aos antisense Interval_157738 chr8 72645828 72646658 + 0 NA promoter-TSS (ENSMUSG00000048148.18) protein_coding-promoter-TSS (ENSMUSG00000048148.18) -4051 ENSMUSG00000048148.18 ENSMUSG00000048148 ENSMUST00000162248 Nwd1 protein_coding Interval_3861 chr1 63859192 63859520 + 0 NA Intergenic Intergenic -13778 ENSMUSG00000080817.1 ENSMUSG00000080817 ENSMUST00000120280 Gm13751 processed_pseudogene Interval_108817 chr3 131886413 131886828 + 0 NA intron (ENSMUSG00000105331.1, intron 1 of 3) lincRNA-intron (ENSMUSG00000105331.1, intron 1 of 3) 12708 ENSMUSG00000104853.2 ENSMUSG00000104853 ENSMUST00000198131 Olfr375-ps1 unprocessed_pseudogene Interval_155953 chr8 41250615 41251084 + 0 NA intron (ENSMUSG00000031592.10, intron 1 of 38) protein_coding-intron (ENSMUSG00000031592.10, intron 1 of 37) 11071 ENSMUSG00000031592.10 ENSMUSG00000031592 ENSMUST00000211247 Pcm1 protein_coding Interval_24961 chr11 42077126 42077327 + 0 NA Intergenic Intergenic 104878 ENSMUSG00000010803.13 ENSMUSG00000010803 ENSMUST00000206085 Gabra1 protein_coding Interval_144378 chr7 24800722 24800953 + 0 NA Intergenic Intergenic -17958 ENSMUSG00000011350.15 ENSMUSG00000011350 ENSMUST00000155799 Gm5893 processed_transcript Interval_23344 chr11 21600604 21601561 + 0 NA intron (ENSMUSG00000020319.9, intron 1 of 8) protein_coding-intron (ENSMUSG00000020319.9, intron 1 of 17) -29148 ENSMUSG00000020321.16 ENSMUSG00000020321 ENSMUST00000125302 Mdh1 protein_coding Interval_44544 chr13 45943834 45944916 + 0 NA intron (ENSMUSG00000046876.16, intron 1 of 2) protein_coding-intron (ENSMUSG00000046876.16, intron 2 of 7) 8335 ENSMUSG00000113987.1 ENSMUSG00000113987 ENSMUST00000222376 4930453C13Rik antisense Interval_120152 chr4 143090668 143091084 + 0 NA Intergenic Intergenic -17110 ENSMUSG00000110067.2 ENSMUSG00000110067 ENSMUST00000238915 6330411D24Rik protein_coding Interval_162197 chr8 125868708 125868907 + 0 NA intron (ENSMUSG00000060212.13, intron 8 of 16) protein_coding-intron (ENSMUSG00000060212.13, intron 8 of 33) -29107 ENSMUSG00000100812.1 ENSMUSG00000100812 ENSMUST00000188193 A730098A19Rik antisense Interval_58942 chr15 40257977 40258278 + 0 NA Intergenic Intergenic -72028 ENSMUSG00000092855.1 ENSMUSG00000092855 ENSMUST00000175114 Gm25958 miRNA Interval_170684 chr9 110085182 110085491 + 0 NA promoter-TSS (ENSMUSG00000032480.17) protein_coding-promoter-TSS (ENSMUSG00000032480.17) 179 ENSMUSG00000032480.17 ENSMUSG00000032480 ENSMUST00000197979 Dhx30 protein_coding Interval_51661 chr14 31199746 31200449 + 0 NA TTS (ENSMUSG00000021910.15) protein_coding-TTS (ENSMUSG00000021910.15) -8233 ENSMUSG00000091898.8 ENSMUSG00000091898 ENSMUST00000161399 Tnnc1 protein_coding Interval_98536 chr2 153060168 153060391 + 0 NA Intergenic Intergenic -5676 ENSMUSG00000027474.13 ENSMUSG00000027474 ENSMUST00000109800 Ccm2l protein_coding Interval_161286 chr8 119502208 119503831 + 0 NA Intergenic Intergenic -1725 ENSMUSG00000034224.14 ENSMUSG00000034224 ENSMUST00000133821 Slc38a8 protein_coding Interval_148261 chr7 80156714 80157091 + 0 NA TTS (ENSMUSG00000108757.1) lincRNA-TTS (ENSMUSG00000108757.1) 1733 ENSMUSG00000108757.1 ENSMUSG00000108757 ENSMUST00000205955 Gm45202 lincRNA Interval_151720 chr7 126247702 126248995 + 0 NA promoter-TSS (ENSMUSG00000108676.1) lincRNA-promoter-TSS (ENSMUSG00000108676.1) -110 ENSMUSG00000108676.1 ENSMUSG00000108676 ENSMUST00000206035 1700123J17Rik lincRNA Interval_135213 chr6 37581957 37584054 + 0 NA Intergenic Intergenic 41591 ENSMUSG00000106889.1 ENSMUSG00000106889 ENSMUST00000201541 Gm7463 processed_pseudogene Interval_47520 chr13 86228613 86229096 + 0 NA Intergenic Intergenic -6973 ENSMUSG00000098152.1 ENSMUSG00000098152 ENSMUST00000182392 Gm27025 processed_pseudogene Interval_80406 chr18 41907657 41908441 + 0 NA intron (ENSMUSG00000056671.7, intron 5 of 6) protein_coding-intron (ENSMUSG00000056671.7, intron 5 of 5) -12736 ENSMUSG00000118266.1 ENSMUSG00000118266 ENSMUST00000235276 Gm18371 processed_pseudogene Interval_89834 chr2 25863418 25864504 + 0 NA promoter-TSS (ENSMUSG00000058740.14) protein_coding-promoter-TSS (ENSMUSG00000058740.14) -7 ENSMUSG00000058740.14 ENSMUSG00000058740 ENSMUST00000199269 Kcnt1 protein_coding Interval_148524 chr7 82104405 82104599 + 0 NA Intergenic Intergenic -15570 ENSMUSG00000108868.1 ENSMUSG00000108868 ENSMUST00000209149 Gm32850 lincRNA Interval_12857 chr10 6778219 6778429 + 0 NA intron (ENSMUSG00000000766.18, intron 2 of 5) protein_coding-intron (ENSMUSG00000000766.18, intron 1 of 4) -10485 ENSMUSG00000000766.18 ENSMUSG00000000766 ENSMUST00000148625 Oprm1 protein_coding Interval_98356 chr2 151748216 151748707 + 0 NA exon (ENSMUSG00000086800.1, exon 2 of 2) lincRNA-exon (ENSMUSG00000086800.1, exon 2 of 2) 1517 ENSMUSG00000086800.1 ENSMUSG00000086800 ENSMUST00000134422 4930556L07Rik lincRNA Interval_102444 chr3 26397382 26397692 + 0 NA Intergenic Intergenic 17092 ENSMUSG00000102274.1 ENSMUSG00000102274 ENSMUST00000192270 Gm4855 processed_pseudogene Interval_72490 chr17 30149740 30150412 + 0 NA intron (ENSMUSG00000044477.12, intron 1 of 3) protein_coding-intron (ENSMUSG00000044477.12, intron 3 of 4) 13886 ENSMUSG00000044477.12 ENSMUSG00000044477 ENSMUST00000234091 Zfand3 protein_coding Interval_146547 chr7 46761093 46762033 + 0 NA intron (ENSMUSG00000014418.16, intron 22 of 22) protein_coding-intron (ENSMUSG00000014418.16, intron 22 of 22) 7529 ENSMUSG00000014418.16 ENSMUSG00000014418 ENSMUST00000123725 Hps5 protein_coding Interval_85693 chr19 29695225 29696036 + 0 NA Intergenic Intergenic -2304 ENSMUSG00000024806.4 ENSMUSG00000024806 ENSMUST00000235954 Mlana protein_coding Interval_50873 chr14 20370922 20371521 + 0 NA exon (ENSMUSG00000039599.16, exon 8 of 8) protein_coding-exon (ENSMUSG00000039599.16, exon 8 of 8) 7655 ENSMUSG00000114937.1 ENSMUSG00000114937 ENSMUST00000225363 Gm30054 antisense Interval_43962 chr13 38473278 38473476 + 0 NA intron (ENSMUSG00000039004.6, intron 2 of 3) protein_coding-intron (ENSMUSG00000039004.6, intron 2 of 6) -11572 ENSMUSG00000114895.1 ENSMUSG00000114895 ENSMUST00000225893 4930579J19Rik antisense Interval_124773 chr5 53825568 53825937 + 0 NA intron (ENSMUSG00000039178.9, intron 1 of 2) protein_coding-intron (ENSMUSG00000039178.9, intron 1 of 20) -65352 ENSMUSG00000039178.9 ENSMUSG00000039178 ENSMUST00000202880 Tbc1d19 protein_coding Interval_96998 chr2 130388711 130389355 + 0 NA Intergenic Intergenic -3704 ENSMUSG00000083483.3 ENSMUSG00000083483 ENSMUST00000117531 Gm14044 processed_pseudogene Interval_167740 chr9 72428856 72429103 + 0 NA Intergenic Intergenic 2664 ENSMUSG00000099019.1 ENSMUSG00000099019 ENSMUST00000183926 Gm27254 processed_pseudogene Interval_117304 chr4 122859737 122860194 + 0 NA TTS (ENSMUSG00000028657.14) protein_coding-TTS (ENSMUSG00000028657.14) 23719 ENSMUSG00000028657.14 ENSMUSG00000028657 ENSMUST00000097902 Ppt1 protein_coding Interval_95321 chr2 106499839 106500102 + 0 NA intron (ENSMUSG00000087226.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000087226.1, intron 1 of 2) 23133 ENSMUSG00000087226.1 ENSMUSG00000087226 ENSMUST00000130634 Gm14015 lincRNA Interval_152580 chr7 134775809 134776597 + 0 NA intron (ENSMUSG00000058325.6, intron 18 of 20) protein_coding-intron (ENSMUSG00000058325.6, intron 18 of 51) 105516 ENSMUSG00000058325.6 ENSMUSG00000058325 ENSMUST00000210121 Dock1 protein_coding Interval_170476 chr9 108219500 108219706 + 0 NA intron (ENSMUSG00000039952.15, intron 1 of 2) protein_coding-intron (ENSMUSG00000039952.15, intron 2 of 3) -28255 ENSMUSG00000102538.1 ENSMUSG00000102538 ENSMUST00000194491 Gm37230 TEC Interval_25999 chr11 53411389 53412223 + 0 NA intron (ENSMUSG00000049470.13, intron 1 of 2) protein_coding-intron (ENSMUSG00000049470.13, intron 19 of 20) 2609 ENSMUSG00000105908.1 ENSMUSG00000105908 ENSMUST00000195888 Mir6920 miRNA Interval_117364 chr4 123264793 123265024 + 0 NA intron (ENSMUSG00000011257.19, intron 2 of 2) protein_coding-intron (ENSMUSG00000011257.19, intron 2 of 2) 6862 ENSMUSG00000083720.1 ENSMUSG00000083720 ENSMUST00000118690 Gm12901 processed_pseudogene Interval_118288 chr4 130055352 130056009 + 0 NA promoter-TSS (ENSMUSG00000040690.15) protein_coding-promoter-TSS (ENSMUSG00000040690.15) 625 ENSMUSG00000040690.15 ENSMUSG00000040690 ENSMUST00000135675 Col16a1 protein_coding Interval_22326 chr11 8842052 8843045 + 0 NA intron (ENSMUSG00000046634.12, intron 39 of 42) protein_coding-intron (ENSMUSG00000046634.12, intron 46 of 49) -35700 ENSMUSG00000081539.1 ENSMUSG00000081539 ENSMUST00000121505 Gm11990 processed_pseudogene Interval_121915 chr5 9557273 9558551 + 0 NA intron (ENSMUSG00000003974.6, intron 3 of 5) protein_coding-intron (ENSMUSG00000003974.6, intron 3 of 5) 44695 ENSMUSG00000106637.1 ENSMUSG00000106637 ENSMUST00000199761 Gm42455 TEC Interval_126457 chr5 88669089 88669347 + 0 NA intron (ENSMUSG00000044221.14, intron 5 of 5) protein_coding-intron (ENSMUSG00000044221.14, intron 5 of 9) 6452 ENSMUSG00000044221.14 ENSMUSG00000044221 ENSMUST00000137725 Grsf1 protein_coding Interval_109496 chr3 142941205 142941800 + 0 NA Intergenic Intergenic -21109 ENSMUSG00000078162.6 ENSMUSG00000078162 ENSMUST00000181051 Gm2574 processed_pseudogene Interval_67422 chr16 48552558 48552821 + 0 NA intron (ENSMUSG00000022652.7, intron 7 of 8) protein_coding-intron (ENSMUSG00000022652.7, intron 14 of 26) 73057 ENSMUSG00000022652.7 ENSMUSG00000022652 ENSMUST00000232195 Morc1 protein_coding Interval_52813 chr14 50834197 50834717 + 0 NA promoter-TSS (ENSMUSG00000006281.8) protein_coding-promoter-TSS (ENSMUSG00000006281.8) -4386 ENSMUSG00000006281.8 ENSMUSG00000006281 ENSMUST00000226789 Tep1 protein_coding Interval_166301 chr9 58174771 58175027 + 0 NA intron (ENSMUSG00000037206.15, intron 3 of 3) protein_coding-intron (ENSMUSG00000037206.15, intron 3 of 3) 17293 ENSMUSG00000110969.1 ENSMUSG00000110969 ENSMUST00000215092 Gm47174 TEC Interval_92173 chr2 55286594 55286813 + 0 NA Intergenic Intergenic -5362 ENSMUSG00000082301.1 ENSMUSG00000082301 ENSMUST00000117686 Gm14032 processed_pseudogene Interval_31167 chr11 98674647 98676575 + 0 NA intron (ENSMUSG00000017204.4, intron 10 of 11) protein_coding-intron (ENSMUSG00000017204.4, intron 10 of 11) -6980 ENSMUSG00000017221.14 ENSMUSG00000017221 ENSMUST00000142790 Psmd3 protein_coding Interval_58937 chr15 40219901 40220276 + 0 NA Intergenic Intergenic -33989 ENSMUSG00000092855.1 ENSMUSG00000092855 ENSMUST00000175114 Gm25958 miRNA Interval_145455 chr7 34861934 34862170 + 0 NA Intergenic Intergenic 81933 ENSMUSG00000077469.1 ENSMUSG00000077469 ENSMUST00000104281 Gm25922 snoRNA Interval_41301 chr12 112586170 112586410 + 0 NA Intergenic Intergenic -18367 ENSMUSG00000037679.9 ENSMUSG00000037679 ENSMUST00000222275 Inf2 protein_coding Interval_38510 chr12 79749592 79750549 + 0 NA intron (ENSMUSG00000059060.15, intron 8 of 10) protein_coding-intron (ENSMUSG00000059060.15, intron 8 of 10) 175424 ENSMUSG00000112765.1 ENSMUSG00000112765 ENSMUST00000219857 9430078K24Rik lincRNA Interval_60685 chr15 76155849 76156408 + 0 NA Intergenic Intergenic 5760 ENSMUSG00000116475.1 ENSMUSG00000116475 ENSMUST00000229700 Gm19945 processed_pseudogene Interval_123947 chr5 36807281 36807516 + 0 NA intron (ENSMUSG00000029119.9, intron 18 of 18) protein_coding-intron (ENSMUSG00000029119.9, intron 18 of 18) 5565 ENSMUSG00000029119.9 ENSMUSG00000029119 ENSMUST00000124711 Man2b2 protein_coding Interval_63704 chr15 102947707 102948466 + 0 NA promoter-TSS (ENSMUSG00000086903.4) lincRNA-promoter-TSS (ENSMUSG00000086903.4) -356 ENSMUSG00000086903.4 ENSMUSG00000086903 ENSMUST00000151949 Hotair lincRNA Interval_154241 chr8 13687541 13688397 + 0 NA Intergenic Intergenic -10518 ENSMUSG00000031453.16 ENSMUSG00000031453 ENSMUST00000132439 Rasa3 protein_coding Interval_30690 chr11 95922933 95924791 + 0 NA Intergenic Intergenic 2760 ENSMUSG00000088854.1 ENSMUSG00000088854 ENSMUST00000158229 Gm24725 snRNA Interval_154112 chr8 12794254 12794544 + 0 NA intron (ENSMUSG00000031441.15, intron 1 of 27) protein_coding-intron (ENSMUSG00000031441.15, intron 1 of 29) 37520 ENSMUSG00000084780.7 ENSMUSG00000084780 ENSMUST00000135138 Gm15350 antisense Interval_11815 chr1 185681996 185682359 + 0 NA Intergenic Intergenic -62626 ENSMUSG00000103799.1 ENSMUSG00000103799 ENSMUST00000195210 Gm38093 lincRNA Interval_132523 chr5 145743867 145744069 + 0 NA Intergenic Intergenic -16577 ENSMUSG00000105661.1 ENSMUSG00000105661 ENSMUST00000198575 Gm43626 processed_pseudogene Interval_93874 chr2 77839442 77840097 + 0 NA promoter-TSS (ENSMUSG00000087102.1) lincRNA-promoter-TSS (ENSMUSG00000087102.1) -847 ENSMUSG00000087102.1 ENSMUSG00000087102 ENSMUST00000154297 Gm13661 lincRNA Interval_100776 chr2 172475160 172475460 + 0 NA TTS (ENSMUSG00000027505.2) protein_coding-TTS (ENSMUSG00000027505.2) 2790 ENSMUSG00000027505.2 ENSMUSG00000027505 ENSMUST00000029007 Fam209 protein_coding Interval_116276 chr4 109225482 109225676 + 0 NA Intergenic Intergenic -19003 ENSMUSG00000028558.14 ENSMUSG00000028558 ENSMUST00000141555 Calr4 protein_coding Interval_174546 chrX 157540284 157540801 + 0 NA promoter-TSS (ENSMUSG00000082002.1) processed_pseudogene-promoter-TSS (ENSMUSG00000082002.1) -324 ENSMUSG00000082002.1 ENSMUSG00000082002 ENSMUST00000122274 Gm6568 processed_pseudogene Interval_55129 chr14 78420240 78420623 + 0 NA Intergenic Intergenic -40861 ENSMUSG00000115450.1 ENSMUSG00000115450 ENSMUST00000227356 Gm4821 processed_pseudogene Interval_163483 chr9 21652314 21652531 + 0 NA intron (ENSMUSG00000032187.16, intron 13 of 33) protein_coding-intron (ENSMUSG00000032187.16, intron 13 of 33) -25491 ENSMUSG00000099192.1 ENSMUSG00000099192 ENSMUST00000184017 Gm27373 misc_RNA Interval_168320 chr9 78654937 78655199 + 0 NA intron (ENSMUSG00000046186.8, intron 6 of 32) protein_coding-intron (ENSMUSG00000046186.8, intron 6 of 32) -24940 ENSMUSG00000091147.1 ENSMUSG00000091147 ENSMUST00000171278 4921509A06Rik antisense Interval_40230 chr12 102655469 102656207 + 0 NA intron (ENSMUSG00000057963.9, intron 2 of 4) protein_coding-intron (ENSMUSG00000057963.9, intron 2 of 9) -14904 ENSMUSG00000057963.9 ENSMUSG00000057963 ENSMUST00000178697 Itpk1 protein_coding Interval_55383 chr14 86364188 86364673 + 0 NA Intergenic Intergenic -44092 ENSMUSG00000087812.1 ENSMUSG00000087812 ENSMUST00000157187 Gm25115 snRNA Interval_152423 chr7 132975882 132976264 + 0 NA intron (ENSMUSG00000030967.15, intron 6 of 9) protein_coding-intron (ENSMUSG00000030967.15, intron 5 of 8) 7479 ENSMUSG00000085663.1 ENSMUSG00000085663 ENSMUST00000131085 Gm15718 antisense Interval_66487 chr16 34230088 34230744 + 0 NA intron (ENSMUSG00000061751.16, intron 12 of 30) protein_coding-intron (ENSMUSG00000061751.16, intron 15 of 59) -134388 ENSMUSG00000061751.16 ENSMUSG00000061751 ENSMUST00000132569 Kalrn protein_coding Interval_159016 chr8 88823734 88824431 + 0 NA Intergenic Intergenic 17691 ENSMUSG00000056772.3 ENSMUSG00000056772 ENSMUST00000079841 Rps6-ps2 processed_pseudogene Interval_36960 chr12 55626315 55627253 + 0 NA intron (ENSMUSG00000021027.17, intron 1 of 3) protein_coding-intron (ENSMUSG00000021027.17, intron 38 of 40) 27357 ENSMUSG00000045440.4 ENSMUSG00000045440 ENSMUST00000051857 Insm2 protein_coding Interval_7618 chr1 132531825 132532518 + 0 NA intron (ENSMUSG00000053024.14, intron 2 of 21) protein_coding-intron (ENSMUSG00000053024.14, intron 2 of 22) 10694 ENSMUSG00000053024.14 ENSMUSG00000053024 ENSMUST00000186530 Cntn2 protein_coding Interval_36020 chr12 33344631 33346295 + 0 NA TTS (ENSMUSG00000020564.17) protein_coding-TTS (ENSMUSG00000020564.17) 31063 ENSMUSG00000020564.17 ENSMUSG00000020564 ENSMUST00000142184 Atxn7l1 protein_coding Interval_8094 chr1 135698267 135699836 + 0 NA Intergenic Intergenic -21010 ENSMUSG00000026421.14 ENSMUSG00000026421 ENSMUST00000027677 Csrp1 protein_coding Interval_92321 chr2 58728161 58728757 + 0 NA intron (ENSMUSG00000086129.1, intron 2 of 2) protein_coding-intron (ENSMUSG00000026839.17, intron 1 of 7) -12180 ENSMUSG00000080985.1 ENSMUSG00000080985 ENSMUST00000120476 Gm13559 processed_pseudogene Interval_35616 chr12 25702370 25702927 + 0 NA Intergenic Intergenic 14847 ENSMUSG00000089441.1 ENSMUSG00000089441 ENSMUST00000158816 Gm22527 rRNA Interval_161495 chr8 120724057 120724924 + 0 NA intron (ENSMUSG00000092329.1, intron 1 of 15) protein_coding-intron (ENSMUSG00000092329.1, intron 1 of 15) -2773 ENSMUSG00000097895.1 ENSMUSG00000097895 ENSMUST00000180564 Gm18709 processed_pseudogene Interval_127116 chr5 100391931 100392106 + 0 NA intron (ENSMUSG00000035325.16, intron 1 of 6) protein_coding-intron (ENSMUSG00000035325.16, intron 11 of 27) 595 ENSMUSG00000035325.16 ENSMUSG00000035325 ENSMUST00000182144 Sec31a protein_coding Interval_1180 chr1 16656444 16657592 + 0 NA promoter-TSS (ENSMUSG00000079658.9) protein_coding-promoter-TSS (ENSMUSG00000079658.9) 24 ENSMUSG00000079658.9 ENSMUSG00000079658 ENSMUST00000191535 Eloc protein_coding Interval_116757 chr4 117120065 117121400 + 0 NA TTS (ENSMUSG00000073771.11) protein_coding-TTS (ENSMUSG00000073771.11) 4886 ENSMUSG00000073771.11 ENSMUSG00000073771 ENSMUST00000123346 Btbd19 protein_coding Interval_151502 chr7 123123621 123124780 + 0 NA promoter-TSS (ENSMUSG00000052707.8) protein_coding-promoter-TSS (ENSMUSG00000052707.8) -47446 ENSMUSG00000052707.8 ENSMUSG00000052707 ENSMUST00000206126 Tnrc6a protein_coding Interval_122275 chr5 20887889 20888312 + 0 NA Intergenic Intergenic 5593 ENSMUSG00000045435.9 ENSMUSG00000045435 ENSMUST00000196723 Tmem60 protein_coding Interval_152747 chr7 137156947 137157211 + 0 NA Intergenic Intergenic -10741 ENSMUSG00000110174.1 ENSMUSG00000110174 ENSMUST00000211656 Gm45499 processed_pseudogene Interval_61924 chr15 85284255 85285426 + 0 NA intron (ENSMUSG00000006369.14, intron 16 of 16) protein_coding-intron (ENSMUSG00000006369.14, intron 16 of 16) 21386 ENSMUSG00000006369.14 ENSMUSG00000006369 ENSMUST00000160798 Fbln1 protein_coding Interval_88840 chr2 11562857 11563662 + 0 NA Intergenic Intergenic -9337 ENSMUSG00000026773.19 ENSMUSG00000026773 ENSMUST00000145970 Pfkfb3 protein_coding Interval_87128 chr19 46344643 46345481 + 0 NA intron (ENSMUSG00000025227.14, intron 1 of 8) protein_coding-intron (ENSMUSG00000025227.14, intron 1 of 8) 2300 ENSMUSG00000070127.2 ENSMUSG00000070127 ENSMUST00000093619 Mir146b miRNA Interval_1393 chr1 21271400 21272420 + 0 NA promoter-TSS (ENSMUSG00000096375.2) unprocessed_pseudogene-promoter-TSS (ENSMUSG00000096375.2) -317 ENSMUSG00000099343.1 ENSMUSG00000099343 ENSMUST00000185842 Gm28836 antisense Interval_131517 chr5 137677231 137677540 + 0 NA intron (ENSMUSG00000029722.15, intron 1 of 10) protein_coding-intron (ENSMUSG00000029722.15, intron 1 of 11) -13069 ENSMUSG00000029722.15 ENSMUSG00000029722 ENSMUST00000138604 Agfg2 protein_coding Interval_34092 chr11 120483825 120485271 + 0 NA promoter-TSS (ENSMUSG00000039640.7) protein_coding-promoter-TSS (ENSMUSG00000039640.7) -479 ENSMUSG00000039640.7 ENSMUSG00000039640 ENSMUST00000137619 Mrpl12 protein_coding Interval_44889 chr13 49391521 49392366 + 0 NA Intergenic Intergenic 8854 ENSMUSG00000037933.16 ENSMUSG00000037933 ENSMUST00000220723 Bicd2 protein_coding Interval_77708 chr17 94535598 94536873 + 0 NA Intergenic Intergenic -71950 ENSMUSG00000117476.1 ENSMUSG00000117476 ENSMUST00000234959 Gm9416 processed_pseudogene Interval_140150 chr6 114874109 114875555 + 0 NA exon (ENSMUSG00000030315.15, exon 1 of 4) protein_coding-exon (ENSMUSG00000030315.15, exon 1 of 4) 46984 ENSMUSG00000030315.15 ENSMUSG00000030315 ENSMUST00000204693 Vgll4 protein_coding Interval_13861 chr10 24022931 24023496 + 0 NA Intergenic Intergenic 1984 ENSMUSG00000082437.1 ENSMUSG00000082437 ENSMUST00000120552 Gm15136 unprocessed_pseudogene Interval_82335 chr18 70952348 70952551 + 0 NA Intergenic Intergenic -44798 ENSMUSG00000118271.1 ENSMUSG00000118271 ENSMUST00000236972 Gm50262 processed_pseudogene Interval_54984 chr14 76662719 76664418 + 0 NA Intergenic Intergenic -14086 ENSMUSG00000101009.6 ENSMUSG00000101009 ENSMUST00000191384 1700108F19Rik processed_transcript Interval_121419 chr4 155694126 155695398 + 0 NA exon (ENSMUSG00000074738.2, exon 1 of 1) protein_coding-exon (ENSMUSG00000074738.2, exon 1 of 1) 420 ENSMUSG00000074738.2 ENSMUSG00000074738 ENSMUST00000099265 Fndc10 protein_coding Interval_90526 chr2 30959734 30960456 + 0 NA TTS (ENSMUSG00000026849.18) protein_coding-TTS (ENSMUSG00000026849.18) 3753 ENSMUSG00000026849.18 ENSMUSG00000026849 ENSMUST00000143199 Tor1a protein_coding Interval_154153 chr8 13091317 13091640 + 0 NA intron (ENSMUSG00000038542.14, intron 3 of 10) protein_coding-intron (ENSMUSG00000038542.14, intron 6 of 13) 4969 ENSMUSG00000091784.2 ENSMUSG00000091784 ENSMUST00000166415 Gm17022 processed_pseudogene Interval_118232 chr4 129671605 129673201 + 0 NA intron (ENSMUSG00000003731.13, intron 1 of 1) protein_coding-intron (ENSMUSG00000003731.13, intron 1 of 13) 364 ENSMUSG00000003731.13 ENSMUSG00000003731 ENSMUST00000146361 Kpna6 protein_coding Interval_106880 chr3 101481676 101482307 + 0 NA Intergenic Intergenic -56338 ENSMUSG00000106137.1 ENSMUSG00000106137 ENSMUST00000196233 Gm42538 antisense Interval_105387 chr3 85917657 85917864 + 0 NA Intergenic Intergenic 1977 ENSMUSG00000044330.8 ENSMUSG00000044330 ENSMUST00000054148 Gm9790 processed_pseudogene Interval_66585 chr16 35406860 35407742 + 0 NA intron (ENSMUSG00000022844.8, intron 4 of 5) protein_coding-intron (ENSMUSG00000022844.8, intron 14 of 16) 5874 ENSMUSG00000022844.8 ENSMUSG00000022844 ENSMUST00000231595 Pdia5 protein_coding Interval_81178 chr18 55910331 55910576 + 0 NA Intergenic Intergenic -27700 ENSMUSG00000118141.1 ENSMUSG00000118141 ENSMUST00000235251 Gm4230 lincRNA Interval_74659 chr17 54662490 54663097 + 0 NA Intergenic Intergenic 10857 ENSMUSG00000089514.1 ENSMUSG00000089514 ENSMUST00000158889 Gm26291 snoRNA Interval_146133 chr7 44252570 44254349 + 0 NA intron (ENSMUSG00000012777.14, intron 9 of 10) protein_coding-intron (ENSMUSG00000012777.14, intron 8 of 9) 3009 ENSMUSG00000080683.1 ENSMUSG00000080683 ENSMUST00000117033 Gm23991 snoRNA Interval_64556 chr16 13287668 13288112 + 0 NA intron (ENSMUSG00000009569.14, intron 2 of 4) protein_coding-intron (ENSMUSG00000009569.14, intron 2 of 16) -70531 ENSMUSG00000009569.14 ENSMUSG00000009569 ENSMUST00000149359 Mrtfb protein_coding Interval_19928 chr10 111313113 111313981 + 0 NA Intergenic Intergenic 14868 ENSMUSG00000035759.4 ENSMUSG00000035759 ENSMUST00000040454 Bbs10 protein_coding Interval_34136 chr11 120839390 120841836 + 0 NA intron (ENSMUSG00000048445.6, intron 5 of 5) protein_coding-intron (ENSMUSG00000048445.6, intron 18 of 18) 9584 ENSMUSG00000087638.1 ENSMUSG00000087638 ENSMUST00000138256 Gm11773 antisense Interval_59089 chr15 43487062 43487983 + 0 NA intron (ENSMUSG00000022337.7, intron 1 of 1) protein_coding-intron (ENSMUSG00000022337.7, intron 1 of 10) 10281 ENSMUSG00000022337.7 ENSMUSG00000022337 ENSMUST00000227055 Emc2 protein_coding Interval_79568 chr18 33809532 33810592 + 0 NA intron (ENSMUSG00000024376.7, intron 7 of 7) protein_coding-intron (ENSMUSG00000024376.7, intron 19 of 23) 14898 ENSMUSG00000092819.1 ENSMUSG00000092819 ENSMUST00000175078 Gm23639 snoRNA Interval_160591 chr8 110902042 110902819 + 0 NA promoter-TSS (ENSMUSG00000033703.9) protein_coding-promoter-TSS (ENSMUSG00000033703.9) 58 ENSMUSG00000033703.9 ENSMUSG00000033703 ENSMUST00000212568 Fcsk protein_coding Interval_30765 chr11 96344209 96344491 + 0 NA TTS (ENSMUSG00000048763.11) protein_coding-TTS (ENSMUSG00000048763.11) -2242 ENSMUSG00000075589.3 ENSMUSG00000075589 ENSMUST00000130733 Gm11536 antisense Interval_38957 chr12 84100653 84101760 + 0 NA exon (ENSMUSG00000043487.4, exon 1 of 3) protein_coding-exon (ENSMUSG00000043487.4, exon 1 of 3) 374 ENSMUSG00000043487.4 ENSMUSG00000043487 ENSMUST00000222921 Acot6 protein_coding Interval_140929 chr6 122801051 122802678 + 0 NA promoter-TSS (ENSMUSG00000003153.10) protein_coding-promoter-TSS (ENSMUSG00000003153.10) -8539 ENSMUSG00000107066.2 ENSMUSG00000107066 ENSMUST00000200876 Gm4482 processed_pseudogene Interval_4121 chr1 69459979 69460337 + 0 NA Intergenic Intergenic 19102 ENSMUSG00000099804.1 ENSMUSG00000099804 ENSMUST00000189646 Gm28497 lincRNA Interval_60049 chr15 64243971 64244252 + 0 NA intron (ENSMUSG00000022377.16, intron 2 of 4) protein_coding-intron (ENSMUSG00000022377.16, intron 3 of 30) -70386 ENSMUSG00000115752.1 ENSMUSG00000115752 ENSMUST00000226773 1700010G06Rik antisense Interval_7259 chr1 128285084 128285391 + 0 NA exon (ENSMUSG00000026354.8, exon 17 of 17) protein_coding-exon (ENSMUSG00000026354.8, exon 17 of 17) 7027 ENSMUSG00000026354.8 ENSMUSG00000026354 ENSMUST00000162067 Lct protein_coding Interval_80176 chr18 38037472 38037683 + 0 NA intron (ENSMUSG00000118056.1, intron 2 of 3) lincRNA-intron (ENSMUSG00000118056.1, intron 2 of 3) 14048 ENSMUSG00000118056.1 ENSMUSG00000118056 ENSMUST00000236681 Gm30093 lincRNA Interval_136636 chr6 56860065 56860952 + 0 NA intron (ENSMUSG00000029781.7, intron 5 of 9) protein_coding-intron (ENSMUSG00000029781.7, intron 5 of 9) 11175 ENSMUSG00000029781.7 ENSMUSG00000029781 ENSMUST00000147159 Fkbp9 protein_coding Interval_112029 chr4 33337924 33338838 + 0 NA intron (ENSMUSG00000028274.17, intron 5 of 5) protein_coding-intron (ENSMUSG00000028274.17, intron 7 of 15) 13483 ENSMUSG00000028274.17 ENSMUSG00000028274 ENSMUST00000146870 Rngtt protein_coding Interval_108940 chr3 133506158 133507878 + 0 NA intron (ENSMUSG00000040943.12, intron 2 of 2) protein_coding-intron (ENSMUSG00000040943.12, intron 2 of 10) -26336 ENSMUSG00000040943.12 ENSMUSG00000040943 ENSMUST00000195913 Tet2 protein_coding Interval_100611 chr2 170450912 170451569 + 0 NA Intergenic Intergenic 12579 ENSMUSG00000084067.3 ENSMUSG00000084067 ENSMUST00000120455 Gm14269 processed_pseudogene Interval_71059 chr17 17553473 17554815 + 0 NA intron (ENSMUSG00000023845.7, intron 10 of 11) protein_coding-intron (ENSMUSG00000023845.7, intron 9 of 17) 40632 ENSMUSG00000116796.1 ENSMUSG00000116796 ENSMUST00000232626 Gm49784 TEC Interval_1456 chr1 23693463 23693716 + 0 NA Intergenic Intergenic -68164 ENSMUSG00000026156.8 ENSMUSG00000026156 ENSMUST00000140583 B3gat2 protein_coding Interval_37501 chr12 69384404 69385049 + 0 NA Intergenic Intergenic -12258 ENSMUSG00000052673.2 ENSMUSG00000052673 ENSMUST00000053451 Gm9887 antisense Interval_75689 chr17 70683673 70684569 + 0 NA intron (ENSMUSG00000003279.17, intron 4 of 9) protein_coding-intron (ENSMUSG00000003279.17, intron 9 of 14) 71461 ENSMUSG00000097282.1 ENSMUSG00000097282 ENSMUST00000181546 5031415H12Rik antisense Interval_94580 chr2 92423889 92425251 + 0 NA TTS (ENSMUSG00000068742.11) protein_coding-TTS (ENSMUSG00000068742.11) 7822 ENSMUSG00000068742.11 ENSMUSG00000068742 ENSMUST00000144842 Cry2 protein_coding Interval_13034 chr10 9790935 9791187 + 0 NA intron (ENSMUSG00000019790.17, intron 18 of 25) protein_coding-intron (ENSMUSG00000019790.17, intron 18 of 27) 28524 ENSMUSG00000019790.17 ENSMUSG00000019790 ENSMUST00000219200 Stxbp5 protein_coding Interval_165566 chr9 49533957 49534672 + 0 NA intron (ENSMUSG00000039542.16, intron 13 of 19) antisense-intron (ENSMUSG00000079564.3, intron 2 of 3) 16026 ENSMUSG00000079564.3 ENSMUSG00000079564 ENSMUST00000215070 Gm11149 antisense Interval_3260 chr1 55223221 55223467 + 0 NA TTS (ENSMUSG00000025978.14) protein_coding-TTS (ENSMUSG00000025978.14) -2954 ENSMUSG00000097649.2 ENSMUSG00000097649 ENSMUST00000209801 Gm10561 antisense Interval_10570 chr1 171936974 171937689 + 0 NA intron (ENSMUSG00000015314.10, intron 3 of 8) protein_coding-intron (ENSMUSG00000015314.10, intron 3 of 7) -17975 ENSMUSG00000104413.1 ENSMUSG00000104413 ENSMUST00000191636 Gm37065 antisense Interval_121284 chr4 154726849 154727192 + 0 NA Intergenic Intergenic -59153 ENSMUSG00000051276.4 ENSMUSG00000051276 ENSMUST00000060062 Actrt2 protein_coding Interval_35131 chr12 17493184 17493536 + 0 NA Intergenic Intergenic -51612 ENSMUSG00000011179.8 ENSMUSG00000011179 ENSMUST00000222250 Odc1 protein_coding Interval_81068 chr18 53527284 53528400 + 0 NA intron (ENSMUSG00000069378.14, intron 2 of 6) protein_coding-intron (ENSMUSG00000069378.14, intron 2 of 6) 64259 ENSMUSG00000069378.14 ENSMUSG00000069378 ENSMUST00000115398 Prdm6 protein_coding Interval_74916 chr17 57275026 57277288 + 0 NA Intergenic Intergenic -8235 ENSMUSG00000118457.1 ENSMUSG00000118457 ENSMUST00000238696 Gm46575 unitary_pseudogene Interval_6095 chr1 96801547 96801863 + 0 NA Intergenic Intergenic 39674 ENSMUSG00000077255.1 ENSMUSG00000077255 ENSMUST00000104067 Gm26078 snoRNA Interval_110336 chr3 157050487 157051116 + 0 NA intron (ENSMUSG00000040037.13, intron 3 of 6) protein_coding-intron (ENSMUSG00000040037.13, intron 3 of 6) -20943 ENSMUSG00000105803.1 ENSMUSG00000105803 ENSMUST00000196666 Gm43526 TEC Interval_18315 chr10 84838821 84839512 + 0 NA intron (ENSMUSG00000020037.15, intron 1 of 13) protein_coding-intron (ENSMUSG00000020037.15, intron 1 of 9) -27983 ENSMUSG00000089451.1 ENSMUSG00000089451 ENSMUST00000158826 Gm24226 snRNA Interval_76004 chr17 74300118 74302649 + 0 NA intron (ENSMUSG00000024067.14, intron 3 of 3) protein_coding-intron (ENSMUSG00000024067.14, intron 4 of 4) -6520 ENSMUSG00000058704.9 ENSMUSG00000058704 ENSMUST00000232861 Memo1 protein_coding Interval_128994 chr5 116510663 116510888 + 0 NA intron (ENSMUSG00000063919.11, intron 1 of 12) protein_coding-intron (ENSMUSG00000063919.11, intron 1 of 12) -8059 ENSMUSG00000107172.1 ENSMUSG00000107172 ENSMUST00000200924 4933430H06Rik TEC Interval_165569 chr9 49570227 49572264 + 0 NA intron (ENSMUSG00000039542.16, intron 1 of 17) protein_coding-intron (ENSMUSG00000039542.16, intron 1 of 15) 52957 ENSMUSG00000079564.3 ENSMUSG00000079564 ENSMUST00000215070 Gm11149 antisense Interval_92051 chr2 52890921 52891263 + 0 NA intron (ENSMUSG00000036053.17, intron 1 of 26) protein_coding-intron (ENSMUSG00000036053.17, intron 1 of 26) 33232 ENSMUSG00000036053.17 ENSMUSG00000036053 ENSMUST00000050719 Fmnl2 protein_coding Interval_24047 chr11 29769640 29769842 + 0 NA intron (ENSMUSG00000044072.14, intron 28 of 41) protein_coding-intron (ENSMUSG00000044072.14, intron 28 of 41) 33358 ENSMUSG00000044072.14 ENSMUSG00000044072 ENSMUST00000109452 Eml6 protein_coding Interval_167283 chr9 67032464 67032860 + 0 NA exon (ENSMUSG00000032366.15, exon 5 of 5) protein_coding-exon (ENSMUSG00000032366.15, exon 5 of 5) 163 ENSMUSG00000032366.15 ENSMUSG00000032366 ENSMUST00000131279 Tpm1 protein_coding Interval_121578 chr5 3568453 3568994 + 0 NA exon (ENSMUSG00000058503.11, exon 1 of 1) protein_coding-exon (ENSMUSG00000058503.11, exon 1 of 1) 1887 ENSMUSG00000058503.11 ENSMUSG00000058503 ENSMUST00000200354 Fam133b protein_coding Interval_154653 chr8 22382566 22383610 + 0 NA exon (ENSMUSG00000031482.9, exon 4 of 6) protein_coding-exon (ENSMUSG00000031482.9, exon 4 of 6) 15456 ENSMUSG00000031482.9 ENSMUSG00000031482 ENSMUST00000210020 Slc25a15 protein_coding Interval_113841 chr4 59271801 59273694 + 0 NA Intergenic Intergenic 12696 ENSMUSG00000086952.1 ENSMUSG00000086952 ENSMUST00000124589 Gm12596 lincRNA Interval_145576 chr7 35686186 35688556 + 0 NA exon (ENSMUSG00000043671.14, exon 19 of 19) protein_coding-exon (ENSMUSG00000043671.14, exon 19 of 19) 21194 ENSMUSG00000043671.14 ENSMUSG00000043671 ENSMUST00000124116 Dpy19l3 protein_coding Interval_13018 chr10 9340185 9340500 + 0 NA intron (ENSMUSG00000111627.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000111627.1, intron 1 of 2) 3660 ENSMUSG00000111627.1 ENSMUSG00000111627 ENSMUST00000214867 Gm48749 lincRNA Interval_42154 chr13 9228470 9228686 + 0 NA Intergenic Intergenic 5041 ENSMUSG00000113936.1 ENSMUSG00000113936 ENSMUST00000222096 Gm8784 processed_pseudogene Interval_115665 chr4 101843873 101844395 + 0 NA promoter-TSS (ENSMUSG00000035201.15) protein_coding-promoter-TSS (ENSMUSG00000035201.15) -111 ENSMUSG00000035201.15 ENSMUSG00000035201 ENSMUST00000084386 B020004J07Rik protein_coding Interval_47544 chr13 87567341 87567957 + 0 NA Intergenic Intergenic 110871 ENSMUSG00000076958.1 ENSMUSG00000076958 ENSMUST00000103770 Gm24935 miRNA Interval_501 chr1 6457723 6458570 + 0 NA Intergenic Intergenic -16850 ENSMUSG00000103845.1 ENSMUSG00000103845 ENSMUST00000194240 Gm19026 processed_pseudogene Interval_172935 chrX 56694585 56694876 + 0 NA Intergenic Intergenic -30343 ENSMUSG00000088394.1 ENSMUSG00000088394 ENSMUST00000157769 Gm26312 snRNA Interval_17617 chr10 78220858 78221843 + 0 NA intron (ENSMUSG00000000374.8, intron 3 of 4) protein_coding-intron (ENSMUSG00000000374.8, intron 4 of 22) -22251 ENSMUSG00000000374.8 ENSMUSG00000000374 ENSMUST00000217980 Trappc10 protein_coding Interval_73775 chr17 43518425 43519160 + 0 NA Intergenic Intergenic -16059 ENSMUSG00000023914.16 ENSMUSG00000023914 ENSMUST00000152155 Mep1a protein_coding Interval_45025 chr13 51583212 51583916 + 0 NA Intergenic Intergenic -14077 ENSMUSG00000021448.8 ENSMUSG00000021448 ENSMUST00000221850 Shc3 protein_coding Interval_96749 chr2 127718604 127719748 + 0 NA intron (ENSMUSG00000027377.2, intron 1 of 3) protein_coding-intron (ENSMUSG00000027377.2, intron 1 of 3) 10756 ENSMUSG00000027377.2 ENSMUSG00000027377 ENSMUST00000028856 Mall protein_coding Interval_60069 chr15 64438704 64439590 + 0 NA Intergenic Intergenic 42768 ENSMUSG00000115169.1 ENSMUSG00000115169 ENSMUST00000226656 Gm30563 lincRNA Interval_36624 chr12 51605756 51606215 + 0 NA TTS (ENSMUSG00000020953.17) protein_coding-TTS (ENSMUSG00000020953.17) 12606 ENSMUSG00000020953.17 ENSMUSG00000020953 ENSMUST00000220173 Coch protein_coding Interval_67913 chr16 59474941 59475525 + 0 NA intron (ENSMUSG00000022724.15, intron 1 of 1) protein_coding-intron (ENSMUSG00000022724.15, intron 1 of 9) 3165 ENSMUSG00000022724.15 ENSMUSG00000022724 ENSMUST00000131272 Riox2 protein_coding Interval_155960 chr8 41294605 41294890 + 0 NA intron (ENSMUSG00000031592.10, intron 23 of 38) protein_coding-intron (ENSMUSG00000031592.10, intron 22 of 37) 54969 ENSMUSG00000031592.10 ENSMUSG00000031592 ENSMUST00000211247 Pcm1 protein_coding Interval_60473 chr15 74145504 74146488 + 0 NA Intergenic Intergenic -51663 ENSMUSG00000082585.3 ENSMUSG00000082585 ENSMUST00000120421 Gm15387 processed_pseudogene Interval_26628 chr11 59302629 59302998 + 0 NA Intergenic Intergenic -4117 ENSMUSG00000000126.11 ENSMUSG00000000126 ENSMUST00000108783 Wnt9a protein_coding Interval_24591 chr11 34899430 34899676 + 0 NA TTS (ENSMUSG00000064577.1) snRNA-TTS (ENSMUSG00000064577.1) 536 ENSMUSG00000064577.1 ENSMUSG00000064577 ENSMUST00000082643 Gm25799 snRNA Interval_156233 chr8 46300591 46301240 + 0 NA intron (ENSMUSG00000110179.1, intron 1 of 4) lincRNA-intron (ENSMUSG00000110179.1, intron 1 of 4) 1784 ENSMUSG00000110179.1 ENSMUSG00000110179 ENSMUST00000210181 Gm39168 lincRNA Interval_145451 chr7 34838269 34838976 + 0 NA Intergenic Intergenic -84810 ENSMUSG00000060402.8 ENSMUSG00000060402 ENSMUST00000205390 Chst8 protein_coding Interval_4562 chr1 75040102 75040846 + 0 NA intron (ENSMUSG00000026162.7, intron 2 of 4) protein_coding-intron (ENSMUSG00000026162.7, intron 2 of 4) 84726 ENSMUSG00000026162.7 ENSMUSG00000026162 ENSMUST00000188033 Nhej1 protein_coding Interval_80668 chr18 46122699 46123009 + 0 NA Intergenic Intergenic -9595 ENSMUSG00000104009.1 ENSMUSG00000104009 ENSMUST00000193986 Gm38337 TEC Interval_7239 chr1 128127914 128128857 + 0 NA TTS (ENSMUSG00000101535.1) processed_pseudogene-TTS (ENSMUSG00000101535.1) 504 ENSMUSG00000101535.1 ENSMUSG00000101535 ENSMUST00000188284 Gm29383 processed_pseudogene Interval_57035 chr15 5012001 5012306 + 0 NA exon (ENSMUSG00000079105.4, exon 11 of 18) protein_coding-exon (ENSMUSG00000079105.4, exon 11 of 18) -23207 ENSMUSG00000065714.1 ENSMUSG00000065714 ENSMUST00000083780 Gm25652 snRNA Interval_152005 chr7 128154050 128155408 + 0 NA exon (ENSMUSG00000070369.13, exon 2 of 31) protein_coding-exon (ENSMUSG00000070369.13, exon 2 of 31) 710 ENSMUSG00000108729.1 ENSMUSG00000108729 ENSMUST00000205579 Gm17831 processed_pseudogene Interval_139612 chr6 103040772 103041066 + 0 NA Intergenic Intergenic -103381 ENSMUSG00000108294.1 ENSMUSG00000108294 ENSMUST00000203542 Gm44429 processed_pseudogene Interval_28409 chr11 75702952 75703512 + 0 NA intron (ENSMUSG00000017776.15, intron 2 of 2) protein_coding-intron (ENSMUSG00000017776.15, intron 2 of 2) 23690 ENSMUSG00000017776.15 ENSMUSG00000017776 ENSMUST00000147718 Crk protein_coding Interval_108316 chr3 123615437 123615640 + 0 NA intron (ENSMUSG00000027977.15, intron 1 of 6) protein_coding-intron (ENSMUSG00000027977.15, intron 3 of 12) -55409 ENSMUSG00000027977.15 ENSMUSG00000027977 ENSMUST00000132896 Ndst3 protein_coding Interval_96463 chr2 123989751 123990036 + 0 NA Intergenic Intergenic 140063 ENSMUSG00000085496.1 ENSMUSG00000085496 ENSMUST00000129584 4930517E11Rik lincRNA Interval_98243 chr2 150332195 150332657 + 0 NA intron (ENSMUSG00000095315.2, intron 2 of 3) protein_coding-intron (ENSMUSG00000063364.10, intron 3 of 3) 20995 ENSMUSG00000095315.2 ENSMUSG00000095315 ENSMUST00000133235 Gm10130 protein_coding Interval_32747 chr11 110300669 110301016 + 0 NA intron (ENSMUSG00000018800.14, intron 18 of 27) protein_coding-intron (ENSMUSG00000018800.14, intron 17 of 38) 36874 ENSMUSG00000018800.14 ENSMUSG00000018800 ENSMUST00000148984 Abca5 protein_coding Interval_59008 chr15 41650969 41651504 + 0 NA intron (ENSMUSG00000022307.16, intron 2 of 15) protein_coding-intron (ENSMUSG00000022307.16, intron 2 of 15) 137675 ENSMUSG00000097232.1 ENSMUSG00000097232 ENSMUST00000180418 Gm26854 antisense Interval_26151 chr11 54762990 54765659 + 0 NA intron (ENSMUSG00000052298.12, intron 1 of 4) protein_coding-intron (ENSMUSG00000052298.12, intron 1 of 5) -17500 ENSMUSG00000082503.1 ENSMUSG00000082503 ENSMUST00000120487 Gm12229 processed_pseudogene Interval_57061 chr15 5230544 5231263 + 0 NA intron (ENSMUSG00000039942.15, intron 1 of 2) protein_coding-intron (ENSMUSG00000039942.15, intron 1 of 2) 11807 ENSMUSG00000039942.15 ENSMUSG00000039942 ENSMUST00000047379 Ptger4 protein_coding Interval_22927 chr11 17482734 17483451 + 0 NA Intergenic Intergenic -65194 ENSMUSG00000087833.1 ENSMUSG00000087833 ENSMUST00000157208 Gm23959 misc_RNA Interval_146302 chr7 45223064 45224011 + 0 NA intron (ENSMUSG00000030796.17, intron 1 of 1) protein_coding-intron (ENSMUSG00000030796.17, intron 6 of 11) 5498 ENSMUSG00000030796.17 ENSMUSG00000030796 ENSMUST00000209222 Tead2 protein_coding Interval_12277 chr1 191346247 191346825 + 0 NA intron (ENSMUSG00000026627.7, intron 5 of 7) protein_coding-intron (ENSMUSG00000026627.7, intron 5 of 7) 20624 ENSMUSG00000026627.7 ENSMUSG00000026627 ENSMUST00000027940 Pacc1 protein_coding Interval_104901 chr3 78865812 78866481 + 0 NA promoter-TSS (ENSMUSG00000102438.1) processed_pseudogene-promoter-TSS (ENSMUSG00000102438.1) -583 ENSMUSG00000102438.1 ENSMUSG00000102438 ENSMUST00000192061 Gm17953 processed_pseudogene Interval_73194 chr17 35513350 35514532 + 0 NA promoter-TSS (ENSMUSG00000118589.1) unprocessed_pseudogene-promoter-TSS (ENSMUSG00000118589.1) -276 ENSMUSG00000118589.1 ENSMUSG00000118589 ENSMUST00000239282 CR974473.1 unprocessed_pseudogene Interval_168265 chr9 78319666 78321040 + 0 NA TTS (ENSMUSG00000090802.2) unprocessed_pseudogene-TTS (ENSMUSG00000090802.2) 2001 ENSMUSG00000090802.2 ENSMUSG00000090802 ENSMUST00000095071 Gm8074 unprocessed_pseudogene Interval_17260 chr10 75396925 75397267 + 0 NA intron (ENSMUSG00000033416.15, intron 6 of 8) protein_coding-intron (ENSMUSG00000033416.15, intron 6 of 8) -4019 ENSMUSG00000033427.14 ENSMUSG00000033427 ENSMUST00000129946 Upb1 protein_coding Interval_12860 chr10 6832442 6832717 + 0 NA exon (ENSMUSG00000000766.18, exon 4 of 4) protein_coding-exon (ENSMUSG00000000766.18, exon 4 of 4) 43770 ENSMUSG00000000766.18 ENSMUSG00000000766 ENSMUST00000148625 Oprm1 protein_coding Interval_81540 chr18 61582872 61583119 + 0 NA TTS (ENSMUSG00000024576.14) protein_coding-TTS (ENSMUSG00000024576.14) 27656 ENSMUSG00000024576.14 ENSMUSG00000024576 ENSMUST00000170482 Csnk1a1 protein_coding Interval_168059 chr9 75740565 75740808 + 0 NA Intergenic Intergenic -46027 ENSMUSG00000098232.1 ENSMUSG00000098232 ENSMUST00000182463 Gm3671 processed_pseudogene Interval_22530 chr11 11541423 11541632 + 0 NA Intergenic Intergenic -15894 ENSMUSG00000087452.1 ENSMUSG00000087452 ENSMUST00000146304 Gm11998 antisense Interval_113134 chr4 48555751 48555985 + 0 NA intron (ENSMUSG00000039693.11, intron 2 of 2) protein_coding-intron (ENSMUSG00000039693.11, intron 2 of 2) 15322 ENSMUSG00000039693.11 ENSMUSG00000039693 ENSMUST00000132360 Msantd3 protein_coding Interval_41654 chr12 117426215 117427999 + 0 NA Intergenic Intergenic -90095 ENSMUSG00000101930.1 ENSMUSG00000101930 ENSMUST00000186454 Gm5441 antisense Interval_13891 chr10 24321467 24321689 + 0 NA Intergenic Intergenic 98033 ENSMUSG00000020000.7 ENSMUSG00000020000 ENSMUST00000154916 Moxd1 protein_coding Interval_5659 chr1 90613728 90614081 + 0 NA TTS (ENSMUSG00000034432.11) protein_coding-TTS (ENSMUSG00000034432.11) 10428 ENSMUSG00000034432.11 ENSMUSG00000034432 ENSMUST00000186882 Cops8 protein_coding Interval_104275 chr3 62489591 62490062 + 0 NA intron (ENSMUSG00000027770.5, intron 9 of 24) protein_coding-intron (ENSMUSG00000027770.5, intron 9 of 24) 12307 ENSMUSG00000027770.5 ENSMUSG00000027770 ENSMUST00000192223 Dhx36 protein_coding Interval_114114 chr4 63544247 63545555 + 0 NA exon (ENSMUSG00000039105.6, exon 1 of 3) protein_coding-exon (ENSMUSG00000039105.6, exon 1 of 3) 129 ENSMUSG00000039105.6 ENSMUSG00000039105 ENSMUST00000035301 Atp6v1g1 protein_coding Interval_154026 chr8 12019311 12019760 + 0 NA Intergenic Intergenic 71196 ENSMUSG00000109995.1 ENSMUSG00000109995 ENSMUST00000209977 B020031H02Rik lincRNA Interval_38740 chr12 81772482 81772734 + 0 NA intron (ENSMUSG00000042724.8, intron 2 of 7) protein_coding-intron (ENSMUSG00000042724.8, intron 2 of 10) 8401 ENSMUSG00000042724.8 ENSMUSG00000042724 ENSMUST00000223292 Map3k9 protein_coding Interval_104463 chr3 65990960 65991451 + 0 NA Intergenic Intergenic -1452 ENSMUSG00000103641.1 ENSMUSG00000103641 ENSMUST00000194681 Gm19024 processed_pseudogene Interval_70855 chr17 15422348 15422724 + 0 NA intron (ENSMUSG00000116718.1, intron 4 of 4) protein_coding-intron (ENSMUSG00000014763.8, intron 6 of 10) 12429 ENSMUSG00000116718.1 ENSMUSG00000116718 ENSMUST00000231947 Gm49668 lincRNA Interval_87219 chr19 46992304 46992565 + 0 NA intron (ENSMUSG00000025041.17, intron 1 of 17) protein_coding-intron (ENSMUSG00000025041.17, intron 1 of 17) -22264 ENSMUSG00000034336.3 ENSMUSG00000034336 ENSMUST00000037636 Ina protein_coding Interval_99546 chr2 163069318 163069785 + 0 NA intron (ENSMUSG00000017861.11, intron 1 of 1) protein_coding-intron (ENSMUSG00000017861.11, intron 6 of 13) 1461 ENSMUSG00000099091.1 ENSMUSG00000099091 ENSMUST00000184607 Mir7003 miRNA Interval_89064 chr2 15260465 15261265 + 0 NA Intergenic Intergenic -81760 ENSMUSG00000080930.2 ENSMUSG00000080930 ENSMUST00000119955 Gm13367 processed_pseudogene Interval_173999 chrX 127548047 127548409 + 0 NA Intergenic Intergenic -101312 ENSMUSG00000082382.1 ENSMUSG00000082382 ENSMUST00000122289 Gm14970 processed_pseudogene Interval_91659 chr2 45930187 45930765 + 0 NA Intergenic Intergenic 121004 ENSMUSG00000083807.1 ENSMUSG00000083807 ENSMUST00000121515 Gm13466 processed_pseudogene Interval_39508 chr12 88909987 88911647 + 0 NA intron (ENSMUSG00000066392.12, intron 4 of 7) protein_coding-intron (ENSMUSG00000066392.12, intron 3 of 19) 278548 ENSMUSG00000113997.1 ENSMUSG00000113997 ENSMUST00000222440 1700040E09Rik lincRNA Interval_131870 chr5 140502520 140503371 + 0 NA Intergenic Intergenic -2630 ENSMUSG00000036599.10 ENSMUSG00000036599 ENSMUST00000124142 Chst12 protein_coding Interval_106747 chr3 100367999 100368188 + 0 NA Intergenic Intergenic -45467 ENSMUSG00000081440.2 ENSMUSG00000081440 ENSMUST00000121385 Gm12464 processed_pseudogene Interval_105326 chr3 84962959 84964249 + 0 NA intron (ENSMUSG00000028086.15, intron 6 of 12) protein_coding-intron (ENSMUSG00000028086.15, intron 3 of 10) 89713 ENSMUSG00000102919.1 ENSMUSG00000102919 ENSMUST00000193246 Gm37726 TEC Interval_7279 chr1 128400070 128401682 + 0 NA intron (ENSMUSG00000026356.15, intron 4 of 15) protein_coding-intron (ENSMUSG00000026356.15, intron 4 of 15) -21389 ENSMUSG00000026356.15 ENSMUSG00000026356 ENSMUST00000064309 Dars protein_coding Interval_122319 chr5 21264821 21265318 + 0 NA intron (ENSMUSG00000039934.12, intron 18 of 26) protein_coding-intron (ENSMUSG00000039934.12, intron 19 of 30) 14552 ENSMUSG00000105275.1 ENSMUSG00000105275 ENSMUST00000199242 Gm43214 processed_pseudogene Interval_18116 chr10 82763401 82764604 + 0 NA promoter-TSS (ENSMUSG00000020248.18) protein_coding-promoter-TSS (ENSMUSG00000020248.18) 5903 ENSMUSG00000112107.1 ENSMUSG00000112107 ENSMUST00000218794 Gm47560 processed_pseudogene Interval_120523 chr4 149136439 149137778 + 0 NA intron (ENSMUSG00000073705.10, intron 1 of 4) protein_coding-intron (ENSMUSG00000073705.10, intron 1 of 4) 461 ENSMUSG00000073705.10 ENSMUSG00000073705 ENSMUST00000105695 Cenps protein_coding Interval_23252 chr11 20916162 20916455 + 0 NA Intergenic Intergenic 21393 ENSMUSG00000096061.1 ENSMUSG00000096061 ENSMUST00000178821 Gm23681 miRNA Interval_93428 chr2 72995029 72997634 + 0 NA Intergenic Intergenic -9615 ENSMUSG00000079286.1 ENSMUSG00000079286 ENSMUST00000112062 Gm11084 protein_coding Interval_113167 chr4 48822108 48822305 + 0 NA Intergenic Intergenic -59244 ENSMUSG00000093240.1 ENSMUSG00000093240 ENSMUST00000175499 Gm24573 rRNA Interval_10504 chr1 171370298 171370546 + 0 NA promoter-TSS (ENSMUSG00000006411.12) protein_coding-promoter-TSS (ENSMUSG00000006411.12) 323 ENSMUSG00000006411.12 ENSMUSG00000006411 ENSMUST00000094325 Nectin4 protein_coding Interval_97574 chr2 140028066 140028451 + 0 NA intron (ENSMUSG00000039033.11, intron 1 of 4) protein_coding-intron (ENSMUSG00000039033.11, intron 4 of 13) 13956 ENSMUSG00000039033.11 ENSMUSG00000039033 ENSMUST00000124949 Tasp1 protein_coding Interval_169452 chr9 97465725 97465918 + 0 NA intron (ENSMUSG00000032452.12, intron 10 of 16) protein_coding-intron (ENSMUSG00000032452.12, intron 10 of 17) -26194 ENSMUSG00000077208.1 ENSMUSG00000077208 ENSMUST00000104020 Gm25607 snoRNA Interval_65315 chr16 21464180 21464413 + 0 NA intron (ENSMUSG00000033653.18, intron 14 of 46) protein_coding-intron (ENSMUSG00000033653.18, intron 13 of 43) -68816 ENSMUSG00000033653.18 ENSMUSG00000033653 ENSMUST00000127903 Vps8 protein_coding Interval_33236 chr11 115409629 115409853 + 0 NA promoter-TSS (ENSMUSG00000018858.15) protein_coding-promoter-TSS (ENSMUSG00000018858.15) -120 ENSMUSG00000018858.15 ENSMUSG00000018858 ENSMUST00000134386 Mrpl58 protein_coding Interval_153936 chr8 11328028 11328215 + 0 NA intron (ENSMUSG00000031503.13, intron 3 of 47) protein_coding-intron (ENSMUSG00000031503.13, intron 3 of 47) -15432 ENSMUSG00000031502.11 ENSMUSG00000031502 ENSMUST00000209000 Col4a1 protein_coding Interval_171776 chr9 120961596 120963686 + 0 NA intron (ENSMUSG00000040936.15, intron 7 of 7) protein_coding-intron (ENSMUSG00000040936.15, intron 7 of 7) -2134 ENSMUSG00000040936.15 ENSMUSG00000040936 ENSMUST00000164969 Ulk4 protein_coding Interval_140393 chr6 117820066 117820837 + 0 NA Intergenic Intergenic 11731 ENSMUSG00000071237.4 ENSMUSG00000071237 ENSMUST00000120444 Gemin6-ps processed_pseudogene Interval_104057 chr3 57794517 57795271 + 0 NA intron (ENSMUSG00000036503.13, intron 4 of 9) protein_coding-intron (ENSMUSG00000036503.13, intron 4 of 9) 15363 ENSMUSG00000106006.1 ENSMUSG00000106006 ENSMUST00000198536 Gm17951 processed_pseudogene Interval_62901 chr15 97800845 97801074 + 0 NA TTS (ENSMUSG00000022475.19) protein_coding-TTS (ENSMUSG00000022475.19) 22439 ENSMUSG00000081534.3 ENSMUSG00000081534 ENSMUST00000229084 Slc48a1 protein_coding Interval_2573 chr1 40632569 40632802 + 0 NA Intergenic Intergenic 32083 ENSMUSG00000026065.8 ENSMUSG00000026065 ENSMUST00000192454 Slc9a4 protein_coding Interval_25746 chr11 51355652 51356016 + 0 NA intron (ENSMUSG00000063564.13, intron 2 of 28) protein_coding-intron (ENSMUSG00000063564.13, intron 2 of 28) 85399 ENSMUSG00000093734.1 ENSMUSG00000093734 ENSMUST00000177296 Gm25082 misc_RNA Interval_86777 chr19 43809127 43809934 + 0 NA promoter-TSS (ENSMUSG00000025194.5) protein_coding-promoter-TSS (ENSMUSG00000025194.5) -992 ENSMUSG00000025194.5 ENSMUSG00000025194 ENSMUST00000099413 Abcc2 protein_coding Interval_153603 chr8 3656964 3657181 + 0 NA intron (ENSMUSG00000012705.16, intron 3 of 3) protein_coding-intron (ENSMUSG00000012705.16, intron 3 of 4) 1302 ENSMUSG00000012705.16 ENSMUSG00000012705 ENSMUST00000012849 Retn protein_coding Interval_82894 chr18 78489132 78489590 + 0 NA intron (ENSMUSG00000024552.16, intron 2 of 21) protein_coding-intron (ENSMUSG00000024552.16, intron 2 of 11) 12483 ENSMUSG00000117661.1 ENSMUSG00000117661 ENSMUST00000235470 4931439C15Rik antisense Interval_44979 chr13 51125135 51126055 + 0 NA intron (ENSMUSG00000021395.11, intron 2 of 5) protein_coding-intron (ENSMUSG00000021395.11, intron 2 of 5) -8724 ENSMUSG00000021395.11 ENSMUSG00000021395 ENSMUST00000223152 Spin1 protein_coding Interval_43802 chr13 36631286 36631578 + 0 NA intron (ENSMUSG00000114851.1, intron 1 of 3) sense_intronic-intron (ENSMUSG00000114851.1, intron 1 of 1) 18460 ENSMUSG00000114851.1 ENSMUSG00000114851 ENSMUST00000226032 Gm46409 sense_intronic Interval_156873 chr8 61384302 61385894 + 0 NA exon (ENSMUSG00000031642.9, exon 11 of 11) protein_coding-exon (ENSMUSG00000031642.9, exon 11 of 11) -3711 ENSMUSG00000109610.1 ENSMUSG00000109610 ENSMUST00000210343 Gm7432 processed_pseudogene Interval_36339 chr12 41594896 41595088 + 0 NA intron (ENSMUSG00000056899.10, intron 3 of 5) protein_coding-intron (ENSMUSG00000056899.10, intron 4 of 6) 49601 ENSMUSG00000113766.1 ENSMUSG00000113766 ENSMUST00000222596 Gm47374 TEC Interval_104147 chr3 59079125 59079711 + 0 NA intron (ENSMUSG00000056476.13, intron 10 of 43) protein_coding-intron (ENSMUSG00000056476.13, intron 11 of 14) 22403 ENSMUSG00000050075.8 ENSMUSG00000050075 ENSMUST00000085040 Gpr171 protein_coding Interval_23166 chr11 20269807 20270549 + 0 NA Intergenic Intergenic 20205 ENSMUSG00000083792.1 ENSMUSG00000083792 ENSMUST00000121298 Rpl12-ps2 processed_pseudogene Interval_80263 chr18 38609707 38610001 + 0 NA intron (ENSMUSG00000118257.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000118257.1, intron 1 of 3) -8439 ENSMUSG00000024427.7 ENSMUSG00000024427 ENSMUST00000025295 Spry4 protein_coding Interval_5530 chr1 89591343 89592298 + 0 NA intron (ENSMUSG00000055013.16, intron 1 of 17) protein_coding-intron (ENSMUSG00000055013.16, intron 1 of 17) 23055 ENSMUSG00000101662.1 ENSMUSG00000101662 ENSMUST00000191576 Gm28499 sense_intronic Interval_145860 chr7 40762549 40762838 + 0 NA Intergenic Intergenic 58417 ENSMUSG00000108672.1 ENSMUSG00000108672 ENSMUST00000206420 Gm45008 TEC Interval_163981 chr9 30284480 30285817 + 0 NA Intergenic Intergenic 6826 ENSMUSG00000096018.1 ENSMUSG00000096018 ENSMUST00000179026 Gm26435 snRNA Interval_170369 chr9 107485844 107487523 + 0 NA intron (ENSMUSG00000010066.15, intron 3 of 37) protein_coding-intron (ENSMUSG00000010066.15, intron 3 of 37) -34829 ENSMUSG00000010066.15 ENSMUSG00000010066 ENSMUST00000168959 Cacna2d2 protein_coding Interval_154059 chr8 12400704 12402211 + 0 NA intron (ENSMUSG00000047935.17, intron 1 of 6) sense_overlapping-intron (ENSMUSG00000047935.17, intron 1 of 8) 5054 ENSMUSG00000092656.1 ENSMUSG00000092656 ENSMUST00000174915 Gm25239 miRNA Interval_171206 chr9 115204814 115206083 + 0 NA intron (ENSMUSG00000040875.12, intron 6 of 11) protein_coding-intron (ENSMUSG00000040875.12, intron 4 of 9) 5050 ENSMUSG00000097967.1 ENSMUSG00000097967 ENSMUST00000182789 Gm27002 sense_intronic Interval_52723 chr14 49027649 49028180 + 0 NA exon (ENSMUSG00000115624.1, exon 1 of 1) TEC-exon (ENSMUSG00000115624.1, exon 1 of 1) 655 ENSMUSG00000115624.1 ENSMUSG00000115624 ENSMUST00000226647 Gm49204 TEC Interval_172145 chrX 7992697 7993962 + 0 NA Intergenic Intergenic 25163 ENSMUSG00000031163.2 ENSMUSG00000031163 ENSMUST00000033503 Glod5 protein_coding Interval_37555 chr12 69846248 69846437 + 0 NA intron (ENSMUSG00000034761.15, intron 7 of 29) protein_coding-intron (ENSMUSG00000034761.15, intron 8 of 30) 26695 ENSMUSG00000113497.1 ENSMUSG00000113497 ENSMUST00000222163 Gm18030 processed_pseudogene Interval_95394 chr2 107950629 107951199 + 0 NA Intergenic Intergenic -64275 ENSMUSG00000077480.1 ENSMUSG00000077480 ENSMUST00000104292 Gm23439 snoRNA Interval_39912 chr12 99669831 99670520 + 0 NA Intergenic Intergenic 27082 ENSMUSG00000113136.1 ENSMUSG00000113136 ENSMUST00000222616 Gm19951 lincRNA Interval_9476 chr1 157509987 157510212 + 0 NA intron (ENSMUSG00000026589.14, intron 2 of 27) protein_coding-intron (ENSMUSG00000026589.14, intron 1 of 26) 1622 ENSMUSG00000087093.2 ENSMUSG00000087093 ENSMUST00000135147 Gm15486 antisense Interval_90687 chr2 31893183 31894580 + 0 NA intron (ENSMUSG00000026840.14, intron 1 of 27) protein_coding-intron (ENSMUSG00000026840.14, intron 1 of 27) -1464 ENSMUSG00000086356.1 ENSMUSG00000086356 ENSMUST00000140104 Gm13441 antisense Interval_38971 chr12 84192848 84194378 + 0 NA exon (ENSMUSG00000042507.15, exon 1 of 13) protein_coding-exon (ENSMUSG00000042507.15, exon 1 of 13) -2356 ENSMUSG00000113052.1 ENSMUSG00000113052 ENSMUST00000223261 Gm31513 antisense Interval_59016 chr15 41738568 41738938 + 0 NA intron (ENSMUSG00000022307.16, intron 1 of 6) protein_coding-intron (ENSMUSG00000022307.16, intron 3 of 15) 50158 ENSMUSG00000097232.1 ENSMUSG00000097232 ENSMUST00000180418 Gm26854 antisense Interval_24965 chr11 42181589 42183118 + 0 NA promoter-TSS (ENSMUSG00000010803.13) protein_coding-promoter-TSS (ENSMUSG00000010803.13) -249 ENSMUSG00000010803.13 ENSMUSG00000010803 ENSMUST00000206085 Gabra1 protein_coding Interval_45117 chr13 52457280 52458240 + 0 NA Intergenic Intergenic 73519 ENSMUSG00000047842.7 ENSMUSG00000047842 ENSMUST00000057442 Diras2 protein_coding Interval_170761 chr9 110580884 110581059 + 0 NA intron (ENSMUSG00000044791.16, intron 2 of 4) protein_coding-intron (ENSMUSG00000044791.16, intron 12 of 20) 7349 ENSMUSG00000044791.16 ENSMUSG00000044791 ENSMUST00000197260 Setd2 protein_coding Interval_137146 chr6 68148734 68149049 + 0 NA Intergenic Intergenic 1771 ENSMUSG00000105007.1 ENSMUSG00000105007 ENSMUST00000199827 Gm43170 processed_pseudogene Interval_111767 chr4 28139009 28139209 + 0 NA Intergenic Intergenic 71932 ENSMUSG00000082977.1 ENSMUSG00000082977 ENSMUST00000117938 Gm11911 processed_pseudogene Interval_164155 chr9 32027992 32028500 + 0 NA Intergenic Intergenic 16612 ENSMUSG00000110845.1 ENSMUSG00000110845 ENSMUST00000216731 Gm47481 processed_pseudogene Interval_80403 chr18 41886320 41887716 + 0 NA intron (ENSMUSG00000056671.7, intron 5 of 6) protein_coding-intron (ENSMUSG00000056671.7, intron 5 of 5) 8295 ENSMUSG00000118266.1 ENSMUSG00000118266 ENSMUST00000235276 Gm18371 processed_pseudogene Interval_75802 chr17 71495451 71496008 + 0 NA TTS (ENSMUSG00000024056.10) protein_coding-TTS (ENSMUSG00000024056.10) 10814 ENSMUSG00000089105.1 ENSMUSG00000089105 ENSMUST00000158480 Gm23115 rRNA Interval_69793 chr16 96415745 96415946 + 0 NA intron (ENSMUSG00000000159.16, intron 3 of 3) protein_coding-intron (ENSMUSG00000000159.16, intron 8 of 8) 17027 ENSMUSG00000000157.16 ENSMUSG00000000157 ENSMUST00000233827 Itgb2l protein_coding Interval_157413 chr8 70200759 70201016 + 0 NA intron (ENSMUSG00000002346.16, intron 1 of 5) protein_coding-intron (ENSMUSG00000002346.16, intron 1 of 8) 11418 ENSMUSG00000002346.16 ENSMUSG00000002346 ENSMUST00000134596 Slc25a42 protein_coding Interval_131706 chr5 139416875 139418284 + 0 NA intron (ENSMUSG00000053553.11, intron 1 of 2) protein_coding-intron (ENSMUSG00000053553.11, intron 2 of 4) -5701 ENSMUSG00000053647.4 ENSMUSG00000053647 ENSMUST00000173364 Gper1 protein_coding Interval_90088 chr2 27885677 27887378 + 0 NA exon (ENSMUSG00000026837.16, exon 1 of 66) protein_coding-exon (ENSMUSG00000026837.16, exon 1 of 66) 525 ENSMUSG00000085766.1 ENSMUSG00000085766 ENSMUST00000154246 2810430I11Rik processed_transcript Interval_148983 chr7 90734025 90734364 + 0 NA intron (ENSMUSG00000052572.19, intron 4 of 27) protein_coding-intron (ENSMUSG00000052572.19, intron 4 of 27) 77967 ENSMUSG00000109074.1 ENSMUSG00000109074 ENSMUST00000209013 Gm45162 processed_pseudogene Interval_41355 chr12 113026626 113026974 + 0 NA intron (ENSMUSG00000021143.10, intron 2 of 5) protein_coding-intron (ENSMUSG00000021143.10, intron 1 of 23) 12292 ENSMUSG00000021143.10 ENSMUSG00000021143 ENSMUST00000221382 Pacs2 protein_coding Interval_160743 chr8 111919600 111919984 + 0 NA intron (ENSMUSG00000031951.8, intron 2 of 6) protein_coding-intron (ENSMUSG00000031951.8, intron 2 of 6) 8368 ENSMUSG00000031951.8 ENSMUSG00000031951 ENSMUST00000213050 Tmem231 protein_coding Interval_8150 chr1 136093711 136094411 + 0 NA intron (ENSMUSG00000026407.17, intron 14 of 37) protein_coding-intron (ENSMUSG00000026407.17, intron 19 of 43) 20507 ENSMUSG00000026407.17 ENSMUSG00000026407 ENSMUST00000159106 Cacna1s protein_coding Interval_95969 chr2 118779126 118780201 + 0 NA promoter-TSS (ENSMUSG00000040035.14) protein_coding-promoter-TSS (ENSMUSG00000040035.14) -96 ENSMUSG00000040035.14 ENSMUSG00000040035 ENSMUST00000142072 Disp2 protein_coding Interval_31219 chr11 98971892 98973372 + 0 NA exon (ENSMUSG00000037992.16, exon 9 of 10) protein_coding-exon (ENSMUSG00000037992.16, exon 9 of 10) 10384 ENSMUSG00000047197.1 ENSMUSG00000047197 ENSMUST00000062931 Gjd3 protein_coding Interval_40195 chr12 102468405 102469685 + 0 NA promoter-TSS (ENSMUSG00000021192.16) protein_coding-promoter-TSS (ENSMUSG00000021192.16) -15412 ENSMUSG00000021192.16 ENSMUSG00000021192 ENSMUST00000222744 Golga5 protein_coding Interval_35496 chr12 23087869 23089265 + 0 NA Intergenic Intergenic 4826 ENSMUSG00000113751.1 ENSMUSG00000113751 ENSMUST00000223096 Gm9293 unprocessed_pseudogene Interval_144678 chr7 27486657 27488060 + 0 NA promoter-TSS (ENSMUSG00000008384.8) protein_coding-promoter-TSS (ENSMUSG00000008384.8) -17 ENSMUSG00000008384.8 ENSMUSG00000008384 ENSMUST00000135881 Sertad1 protein_coding Interval_71112 chr17 18518376 18519601 + 0 NA Intergenic Intergenic 25237 ENSMUSG00000093775.2 ENSMUSG00000093775 ENSMUST00000177016 Vmn2r-ps114 unprocessed_pseudogene Interval_138755 chr6 91656392 91656846 + 0 NA Intergenic Intergenic 22604 ENSMUSG00000108751.1 ENSMUSG00000108751 ENSMUST00000206576 Gm45217 TEC Interval_135869 chr6 48065707 48066494 + 0 NA TTS (ENSMUSG00000057691.8) protein_coding-TTS (ENSMUSG00000057691.8) 16178 ENSMUSG00000057691.8 ENSMUSG00000057691 ENSMUST00000203994 Zfp746 protein_coding Interval_171298 chr9 116207898 116208838 + 0 NA Intergenic Intergenic 9071 ENSMUSG00000111729.1 ENSMUSG00000111729 ENSMUST00000214749 Gm48038 lincRNA Interval_29750 chr11 86568575 86569033 + 0 NA Intergenic Intergenic 15354 ENSMUSG00000065455.1 ENSMUSG00000065455 ENSMUST00000083521 Mir21a miRNA Interval_69884 chr16 97879100 97879739 + 0 NA intron (ENSMUSG00000045975.8, intron 8 of 11) protein_coding-intron (ENSMUSG00000045975.8, intron 8 of 13) -2128 ENSMUSG00000105138.1 ENSMUSG00000105138 ENSMUST00000200252 Mir6964 miRNA Interval_91818 chr2 49844732 49845601 + 0 NA intron (ENSMUSG00000026765.12, intron 1 of 5) protein_coding-intron (ENSMUSG00000026765.12, intron 1 of 9) -32218 ENSMUSG00000085357.1 ENSMUSG00000085357 ENSMUST00000125095 Gm13480 lincRNA Interval_135240 chr6 37740568 37742342 + 0 NA Intergenic Intergenic -54260 ENSMUSG00000107035.1 ENSMUSG00000107035 ENSMUST00000201305 Ybx1-ps2 processed_pseudogene Interval_134800 chr6 31637345 31639029 + 0 NA intron (ENSMUSG00000086804.8, intron 2 of 2) lincRNA-intron (ENSMUSG00000086804.8, intron 1 of 2) 27855 ENSMUSG00000084973.2 ENSMUSG00000084973 ENSMUST00000130777 Gm13848 lincRNA Interval_170885 chr9 111535572 111536327 + 0 NA Intergenic Intergenic 12991 ENSMUSG00000106647.1 ENSMUSG00000106647 ENSMUST00000199378 Gm42523 lincRNA Interval_138916 chr6 93509736 93510333 + 0 NA TTS (ENSMUSG00000088630.1) snoRNA-TTS (ENSMUSG00000088630.1) 461 ENSMUSG00000088630.1 ENSMUSG00000088630 ENSMUST00000158005 Gm22312 snoRNA Interval_113537 chr4 55749369 55750354 + 0 NA Intergenic Intergenic 144712 ENSMUSG00000085375.1 ENSMUSG00000085375 ENSMUST00000123620 Gm12506 lincRNA Interval_39372 chr12 86960150 86960412 + 0 NA TTS (ENSMUSG00000034157.12) protein_coding-TTS (ENSMUSG00000034157.12) 7624 ENSMUSG00000034157.12 ENSMUSG00000034157 ENSMUST00000191463 Cipc protein_coding Interval_11762 chr1 185267093 185267313 + 0 NA exon (ENSMUSG00000039318.12, exon 26 of 35) protein_coding-exon (ENSMUSG00000039318.12, exon 26 of 35) -10595 ENSMUSG00000039318.12 ENSMUSG00000039318 ENSMUST00000195534 Rab3gap2 protein_coding Interval_128680 chr5 114679399 114680470 + 0 NA intron (ENSMUSG00000011884.13, intron 1 of 4) protein_coding-intron (ENSMUSG00000011884.13, intron 1 of 4) 11007 ENSMUSG00000011884.13 ENSMUSG00000011884 ENSMUST00000112212 Gltp protein_coding Interval_55410 chr14 86861477 86862081 + 0 NA intron (ENSMUSG00000022021.14, intron 21 of 26) protein_coding-intron (ENSMUSG00000022021.14, intron 21 of 27) 58932 ENSMUSG00000077948.2 ENSMUSG00000077948 ENSMUST00000104755 Gm23438 miRNA Interval_152815 chr7 138217346 138218008 + 0 NA intron (ENSMUSG00000091002.2, intron 5 of 6) protein_coding-intron (ENSMUSG00000091002.2, intron 10 of 11) -116138 ENSMUSG00000064575.1 ENSMUSG00000064575 ENSMUST00000082641 Gm25798 snRNA Interval_81597 chr18 61973790 61974632 + 0 NA intron (ENSMUSG00000045629.8, intron 5 of 16) protein_coding-intron (ENSMUSG00000045629.8, intron 5 of 16) -3748 ENSMUSG00000045629.8 ENSMUSG00000045629 ENSMUST00000236759 Sh3tc2 protein_coding Interval_65906 chr16 30155400 30156650 + 0 NA Intergenic Intergenic -14080 ENSMUSG00000084444.1 ENSMUSG00000084444 ENSMUST00000122495 n-R5s32 rRNA Interval_71740 chr17 25803223 25803595 + 0 NA Intergenic Intergenic -6441 ENSMUSG00000002274.13 ENSMUSG00000002274 ENSMUST00000002344 Metrn protein_coding Interval_67929 chr16 59617030 59617739 + 0 NA intron (ENSMUSG00000022722.18, intron 7 of 7) protein_coding-intron (ENSMUSG00000022722.18, intron 7 of 7) 21745 ENSMUSG00000022722.18 ENSMUSG00000022722 ENSMUST00000149797 Arl6 protein_coding Interval_145158 chr7 30355635 30356008 + 0 NA TTS (ENSMUSG00000064982.1) snRNA-TTS (ENSMUSG00000064982.1) 1103 ENSMUSG00000064982.1 ENSMUSG00000064982 ENSMUST00000083048 Gm25259 snRNA Interval_131189 chr5 135688559 135689735 + 0 NA promoter-TSS (ENSMUSG00000005514.14) protein_coding-promoter-TSS (ENSMUSG00000005514.14) 9872 ENSMUSG00000080972.1 ENSMUSG00000080972 ENSMUST00000122167 Gm16061 processed_pseudogene Interval_76208 chr17 77260204 77260615 + 0 NA Intergenic Intergenic 102801 ENSMUSG00000117578.1 ENSMUSG00000117578 ENSMUST00000234215 Rpsa-ps8 processed_pseudogene Interval_40088 chr12 101082254 101084494 + 0 NA promoter-TSS (ENSMUSG00000097121.2) antisense-promoter-TSS (ENSMUSG00000097121.2) 923 ENSMUSG00000097121.2 ENSMUSG00000097121 ENSMUST00000220889 D130020L05Rik antisense Interval_97854 chr2 144458585 144459832 + 0 NA promoter-TSS (ENSMUSG00000083674.3) transcribed_unitary_pseudogene-promoter-TSS (ENSMUSG00000083674.3) -5187 ENSMUSG00000083674.3 ENSMUSG00000083674 ENSMUST00000137929 Zfp133-ps transcribed_unitary_pseudogene Interval_131917 chr5 140770132 140770537 + 0 NA intron (ENSMUSG00000000149.10, intron 2 of 3) protein_coding-intron (ENSMUSG00000000149.10, intron 2 of 3) 46196 ENSMUSG00000050022.16 ENSMUSG00000050022 ENSMUST00000176035 Amz1 protein_coding Interval_9163 chr1 154280980 154282380 + 0 NA Intergenic Intergenic 24677 ENSMUSG00000100221.6 ENSMUSG00000100221 ENSMUST00000190980 4930532M18Rik lincRNA Interval_155879 chr8 40583588 40583864 + 0 NA intron (ENSMUSG00000039431.16, intron 6 of 11) protein_coding-intron (ENSMUSG00000039431.16, intron 6 of 14) 40302 ENSMUSG00000031600.11 ENSMUSG00000031600 ENSMUST00000238628 Vps37a protein_coding Interval_69761 chr16 96097159 96098557 + 0 NA promoter-TSS (ENSMUSG00000117270.1) lincRNA-promoter-TSS (ENSMUSG00000117270.1) 653 ENSMUSG00000117270.1 ENSMUSG00000117270 ENSMUST00000233464 Gm49953 lincRNA Interval_5237 chr1 86634127 86635181 + 0 NA Intergenic Intergenic 2954 ENSMUSG00000084468.1 ENSMUSG00000084468 ENSMUST00000122519 Gm22955 miRNA Interval_55701 chr14 99123925 99124380 + 0 NA intron (ENSMUSG00000022064.10, intron 5 of 13) protein_coding-intron (ENSMUSG00000022064.10, intron 5 of 17) 12475 ENSMUSG00000115071.1 ENSMUSG00000115071 ENSMUST00000226897 Gm49026 TEC Interval_164935 chr9 43221718 43222793 + 0 NA TTS (ENSMUSG00000032014.6) protein_coding-TTS (ENSMUSG00000032014.6) 2837 ENSMUSG00000032014.6 ENSMUSG00000032014 ENSMUST00000215387 Oaf protein_coding Interval_166403 chr9 59087089 59087285 + 0 NA Intergenic Intergenic -50760 ENSMUSG00000032340.8 ENSMUSG00000032340 ENSMUST00000216964 Neo1 protein_coding Interval_63693 chr15 102905076 102905530 + 0 NA Intergenic Intergenic -15800 ENSMUSG00000001655.6 ENSMUSG00000001655 ENSMUST00000001700 Hoxc13 protein_coding Interval_88003 chr19 57724879 57725475 + 0 NA intron (ENSMUSG00000054843.9, intron 19 of 28) protein_coding-intron (ENSMUSG00000054843.9, intron 19 of 28) 114143 ENSMUSG00000054843.9 ENSMUSG00000054843 ENSMUST00000077282 Atrnl1 protein_coding Interval_22998 chr11 18678590 18679136 + 0 NA intron (ENSMUSG00000085806.1, intron 3 of 6) lincRNA-intron (ENSMUSG00000085806.1, intron 3 of 6) 31359 ENSMUSG00000085806.1 ENSMUSG00000085806 ENSMUST00000145182 Gm12023 lincRNA Interval_76918 chr17 84979451 84979676 + 0 NA intron (ENSMUSG00000061130.13, intron 2 of 7) protein_coding-intron (ENSMUSG00000061130.13, intron 1 of 5) -14117 ENSMUSG00000061130.13 ENSMUSG00000061130 ENSMUST00000234851 Ppm1b protein_coding Interval_159247 chr8 92209218 92209498 + 0 NA Intergenic Intergenic -23767 ENSMUSG00000110134.1 ENSMUSG00000110134 ENSMUST00000211118 Gm45334 lincRNA Interval_156676 chr8 56827214 56828377 + 0 NA Intergenic Intergenic 61095 ENSMUSG00000110000.1 ENSMUSG00000110000 ENSMUST00000209983 Gm33501 lincRNA Interval_143819 chr7 16485924 16487308 + 0 NA Intergenic Intergenic -8888 ENSMUSG00000001988.9 ENSMUSG00000001988 ENSMUST00000211695 Npas1 protein_coding Interval_47186 chr13 77416749 77416950 + 0 NA intron (ENSMUSG00000071252.6, intron 19 of 19) protein_coding-intron (ENSMUSG00000071252.6, intron 19 of 19) 137524 ENSMUSG00000114778.1 ENSMUSG00000114778 ENSMUST00000223622 Gm9634 processed_pseudogene Interval_155558 chr8 34473459 34473734 + 0 NA promoter-TSS (ENSMUSG00000110369.1) lincRNA-promoter-TSS (ENSMUSG00000110369.1) -601 ENSMUSG00000110369.1 ENSMUSG00000110369 ENSMUST00000210285 Gm45349 lincRNA Interval_32154 chr11 105698731 105699288 + 0 NA intron (ENSMUSG00000053580.16, intron 1 of 3) protein_coding-intron (ENSMUSG00000053580.16, intron 3 of 25) 25587 ENSMUSG00000053580.16 ENSMUSG00000053580 ENSMUST00000147975 Tanc2 protein_coding Interval_174585 chrX 159507803 159508956 + 0 NA Intergenic Intergenic 49242 ENSMUSG00000041020.14 ENSMUSG00000041020 ENSMUST00000156172 Map7d2 protein_coding Interval_119136 chr4 135796530 135796774 + 0 NA intron (ENSMUSG00000037139.15, intron 22 of 36) protein_coding-intron (ENSMUSG00000037139.15, intron 22 of 36) -1538 ENSMUSG00000037139.15 ENSMUSG00000037139 ENSMUST00000142177 Myom3 protein_coding Interval_124340 chr5 44187953 44188276 + 0 NA TTS (ENSMUSG00000046985.11) protein_coding-TTS (ENSMUSG00000046985.11) 29145 ENSMUSG00000105519.1 ENSMUSG00000105519 ENSMUST00000198875 E430021H15Rik TEC Interval_128089 chr5 110806127 110806971 + 0 NA intron (ENSMUSG00000029512.11, intron 3 of 27) protein_coding-intron (ENSMUSG00000029512.11, intron 3 of 27) 3504 ENSMUSG00000029512.11 ENSMUSG00000029512 ENSMUST00000198470 Ulk1 protein_coding Interval_16010 chr10 60099678 60099915 + 0 NA exon (ENSMUSG00000044475.14, exon 11 of 11) protein_coding-exon (ENSMUSG00000044475.14, exon 11 of 11) -6672 ENSMUSG00000058297.16 ENSMUSG00000058297 ENSMUST00000165024 Spock2 protein_coding Interval_143311 chr7 5098498 5100495 + 0 NA Intergenic Intergenic 15741 ENSMUSG00000035203.16 ENSMUSG00000035203 ENSMUST00000155436 Epn1 protein_coding Interval_40756 chr12 108187807 108188122 + 0 NA intron (ENSMUSG00000021258.10, intron 4 of 11) protein_coding-intron (ENSMUSG00000021258.10, intron 3 of 10) -11121 ENSMUSG00000021258.10 ENSMUSG00000021258 ENSMUST00000223363 Ccnk protein_coding Interval_97031 chr2 130658105 130658911 + 0 NA TTS (ENSMUSG00000068290.11) protein_coding-TTS (ENSMUSG00000068290.11) -3731 ENSMUSG00000068290.11 ENSMUSG00000068290 ENSMUST00000135072 Ddrgk1 protein_coding Interval_161788 chr8 122785831 122786105 + 0 NA intron (ENSMUSG00000015016.8, intron 5 of 9) protein_coding-intron (ENSMUSG00000015016.8, intron 5 of 9) 10482 ENSMUSG00000015016.8 ENSMUSG00000015016 ENSMUST00000212790 Acsf3 protein_coding Interval_133643 chr6 7943340 7944759 + 0 NA Intergenic Intergenic 39334 ENSMUSG00000096403.2 ENSMUSG00000096403 ENSMUST00000178598 Rnps1-ps processed_pseudogene Interval_46470 chr13 66414291 66415375 + 0 NA intron (ENSMUSG00000114616.1, intron 2 of 2) lincRNA-intron (ENSMUSG00000114616.1, intron 2 of 2) 2351 ENSMUSG00000114261.1 ENSMUSG00000114261 ENSMUST00000224573 Gm48243 processed_pseudogene Interval_63726 chr15 103069220 103070721 + 0 NA Intergenic Intergenic -10664 ENSMUSG00000102297.1 ENSMUSG00000102297 ENSMUST00000193457 5730585A16Rik TEC Interval_151682 chr7 125991674 125992051 + 0 NA intron (ENSMUSG00000046182.8, intron 2 of 6) protein_coding-intron (ENSMUSG00000046182.8, intron 2 of 6) 72585 ENSMUSG00000108376.1 ENSMUSG00000108376 ENSMUST00000206586 Gm44874 TEC Interval_74033 chr17 46177182 46177515 + 0 NA intron (ENSMUSG00000023953.9, intron 8 of 9) protein_coding-intron (ENSMUSG00000023953.9, intron 9 of 10) 16282 ENSMUSG00000023952.13 ENSMUSG00000023952 ENSMUST00000166663 Gtpbp2 protein_coding Interval_18257 chr10 84383013 84383846 + 0 NA intron (ENSMUSG00000020032.14, intron 1 of 3) protein_coding-intron (ENSMUSG00000020032.14, intron 4 of 6) 8959 ENSMUSG00000020032.14 ENSMUSG00000020032 ENSMUST00000129355 Nuak1 protein_coding Interval_64791 chr16 15836368 15836567 + 0 NA intron (ENSMUSG00000022672.8, intron 83 of 85) protein_coding-intron (ENSMUSG00000022672.8, intron 83 of 85) 26843 ENSMUSG00000022671.13 ENSMUSG00000022671 ENSMUST00000117136 Mzt2 protein_coding Interval_143957 chr7 18522138 18522869 + 0 NA intron (ENSMUSG00000070798.4, intron 4 of 4) protein_coding-intron (ENSMUSG00000070798.4, intron 4 of 4) 9766 ENSMUSG00000070798.4 ENSMUSG00000070798 ENSMUST00000094795 Psg25 protein_coding Interval_133007 chr5 149247606 149248524 + 0 NA promoter-TSS (ENSMUSG00000100465.1) lincRNA-promoter-TSS (ENSMUSG00000100465.1) -38 ENSMUSG00000105790.1 ENSMUSG00000105790 ENSMUST00000196719 Gm24105 miRNA Interval_38601 chr12 80389163 80389835 + 0 NA intron (ENSMUSG00000049106.7, intron 5 of 8) protein_coding-intron (ENSMUSG00000049106.7, intron 5 of 8) 2178 ENSMUSG00000105972.1 ENSMUSG00000105972 ENSMUST00000200234 Mir1843a miRNA Interval_19646 chr10 106916099 106916709 + 0 NA intron (ENSMUSG00000053825.15, intron 8 of 10) protein_coding-intron (ENSMUSG00000053825.15, intron 29 of 31) 23398 ENSMUSG00000053825.15 ENSMUSG00000053825 ENSMUST00000219024 Ppfia2 protein_coding Interval_116241 chr4 108986878 108987483 + 0 NA Intergenic Intergenic 11526 ENSMUSG00000088285.1 ENSMUSG00000088285 ENSMUST00000157660 Gm23589 snRNA Interval_8911 chr1 152069710 152070954 + 0 NA intron (ENSMUSG00000032666.16, intron 1 of 6) protein_coding-intron (ENSMUSG00000032666.16, intron 1 of 5) 19638 ENSMUSG00000032666.16 ENSMUSG00000032666 ENSMUST00000121533 1700025G04Rik protein_coding Interval_169624 chr9 99506393 99506656 + 0 NA intron (ENSMUSG00000032468.11, intron 12 of 21) protein_coding-intron (ENSMUSG00000032468.11, intron 12 of 21) 55049 ENSMUSG00000046242.8 ENSMUSG00000046242 ENSMUST00000056103 Nme9 protein_coding Interval_53609 chr14 59932221 59932852 + 0 NA intron (ENSMUSG00000021983.16, intron 23 of 35) protein_coding-intron (ENSMUSG00000021983.16, intron 23 of 35) 107955 ENSMUSG00000087286.1 ENSMUSG00000087286 ENSMUST00000132939 Gm9013 processed_pseudogene Interval_110145 chr3 153690479 153690677 + 0 NA intron (ENSMUSG00000052544.9, intron 1 of 4) protein_coding-intron (ENSMUSG00000052544.9, intron 1 of 2) -18333 ENSMUSG00000089237.1 ENSMUSG00000089237 ENSMUST00000158612 Gm22206 snoRNA Interval_75935 chr17 73217282 73217925 + 0 NA intron (ENSMUSG00000054469.14, intron 1 of 1) protein_coding-intron (ENSMUSG00000054469.14, intron 5 of 5) 23691 ENSMUSG00000088224.1 ENSMUSG00000088224 ENSMUST00000157599 Gm25406 snoRNA Interval_33460 chr11 116661587 116661800 + 0 NA intron (ENSMUSG00000075410.13, intron 6 of 6) protein_coding-intron (ENSMUSG00000075410.13, intron 4 of 4) -7380 ENSMUSG00000020810.5 ENSMUSG00000020810 ENSMUST00000021166 Cygb protein_coding Interval_55944 chr14 103058635 103060250 + 0 NA Intergenic Intergenic -12288 ENSMUSG00000022125.7 ENSMUSG00000022125 ENSMUST00000227117 Cln5 protein_coding Interval_161230 chr8 118913018 118913532 + 0 NA intron (ENSMUSG00000031841.19, intron 5 of 7) protein_coding-intron (ENSMUSG00000031841.19, intron 5 of 13) 186375 ENSMUSG00000087707.1 ENSMUSG00000087707 ENSMUST00000157082 Gm22999 snoRNA Interval_137562 chr6 73238085 73238648 + 0 NA Intergenic Intergenic -10294 ENSMUSG00000052738.14 ENSMUSG00000052738 ENSMUST00000173409 Suclg1 protein_coding Interval_17330 chr10 75913595 75914062 + 0 NA exon (ENSMUSG00000000902.13, exon 1 of 6) protein_coding-exon (ENSMUSG00000000902.13, exon 1 of 6) 1336 ENSMUSG00000000902.13 ENSMUSG00000000902 ENSMUST00000146555 Smarcb1 protein_coding Interval_7359 chr1 130462091 130463300 + 0 NA promoter-TSS (ENSMUSG00000026399.12) protein_coding-promoter-TSS (ENSMUSG00000026399.12) 36 ENSMUSG00000026399.12 ENSMUSG00000026399 ENSMUST00000133057 Cd55 protein_coding Interval_57138 chr15 6881169 6881424 + 0 NA Intergenic Intergenic -7039 ENSMUSG00000022146.12 ENSMUSG00000022146 ENSMUST00000177263 Osmr protein_coding Interval_128516 chr5 113771176 113773857 + 0 NA promoter-TSS (ENSMUSG00000018974.7) protein_coding-promoter-TSS (ENSMUSG00000018974.7) -489 ENSMUSG00000025825.12 ENSMUSG00000025825 ENSMUST00000145592 Iscu protein_coding Interval_29268 chr11 82479115 82479458 + 0 NA Intergenic Intergenic 41029 ENSMUSG00000020701.12 ENSMUSG00000020701 ENSMUST00000202598 Tmem132e protein_coding Interval_97199 chr2 132206173 132207138 + 0 NA intron (ENSMUSG00000086756.1, intron 2 of 2) antisense-intron (ENSMUSG00000086756.1, intron 2 of 2) 41133 ENSMUSG00000027341.10 ENSMUSG00000027341 ENSMUST00000141813 Tmem230 protein_coding Interval_18594 chr10 88304263 88304924 + 0 NA Intergenic Intergenic 5539 ENSMUSG00000112715.1 ENSMUSG00000112715 ENSMUST00000218701 Gm48476 processed_pseudogene Interval_4119 chr1 69355450 69355722 + 0 NA Intergenic Intergenic -21735 ENSMUSG00000101387.1 ENSMUSG00000101387 ENSMUST00000187740 Pced1c-ps processed_pseudogene Interval_148739 chr7 84879602 84879923 + 0 NA exon (ENSMUSG00000092425.1, exon 1 of 3) unprocessed_pseudogene-exon (ENSMUSG00000092425.1, exon 1 of 3) 207 ENSMUSG00000092425.1 ENSMUSG00000092425 ENSMUST00000173536 Gm8018 unprocessed_pseudogene Interval_53406 chr14 57057246 57058390 + 0 NA promoter-TSS (ENSMUSG00000048582.7) protein_coding-promoter-TSS (ENSMUSG00000048582.7) -95 ENSMUSG00000048582.7 ENSMUSG00000048582 ENSMUST00000223792 Gja3 protein_coding Interval_24566 chr11 34499093 34499353 + 0 NA intron (ENSMUSG00000020143.15, intron 25 of 26) protein_coding-intron (ENSMUSG00000020143.15, intron 25 of 51) 184465 ENSMUSG00000069911.11 ENSMUSG00000069911 ENSMUST00000093192 Insyn2b protein_coding Interval_85368 chr19 25243778 25244479 + 0 NA intron (ENSMUSG00000032702.16, intron 1 of 13) protein_coding-intron (ENSMUSG00000032702.16, intron 1 of 13) -77912 ENSMUSG00000065634.1 ENSMUSG00000065634 ENSMUST00000083700 Gm24252 snoRNA Interval_96442 chr2 122818721 122818923 + 0 NA Intergenic Intergenic 47104 ENSMUSG00000005803.14 ENSMUSG00000005803 ENSMUST00000176343 Sqor protein_coding Interval_21104 chr10 126433120 126433351 + 0 NA Intergenic Intergenic 61260 ENSMUSG00000112482.1 ENSMUSG00000112482 ENSMUST00000218075 1700025K04Rik lincRNA Interval_100681 chr2 171306040 171306404 + 0 NA TTS (ENSMUSG00000088505.1) scaRNA-TTS (ENSMUSG00000088505.1) 209 ENSMUSG00000088505.1 ENSMUSG00000088505 ENSMUST00000157880 Gm26489 scaRNA Interval_35557 chr12 24776983 24778086 + 0 NA promoter-TSS (ENSMUSG00000113018.1) processed_pseudogene-promoter-TSS (ENSMUSG00000113018.1) -851 ENSMUSG00000113018.1 ENSMUSG00000113018 ENSMUST00000222444 Gm9318 processed_pseudogene Interval_92122 chr2 53474085 53475172 + 0 NA Intergenic Intergenic -76141 ENSMUSG00000082472.1 ENSMUSG00000082472 ENSMUST00000118477 Gm13501 processed_pseudogene Interval_155075 chr8 26179048 26180258 + 0 NA Intergenic Intergenic 20860 ENSMUSG00000037214.12 ENSMUSG00000037214 ENSMUST00000209926 Thap1 protein_coding Interval_173531 chrX 98890144 98891256 + 0 NA promoter-TSS (ENSMUSG00000031214.13) protein_coding-promoter-TSS (ENSMUSG00000031214.13) -91 ENSMUSG00000031214.13 ENSMUSG00000031214 ENSMUST00000156634 Ophn1 protein_coding Interval_31742 chr11 102572909 102573713 + 0 NA Intergenic Intergenic 5964 ENSMUSG00000078640.9 ENSMUSG00000078640 ENSMUST00000107080 Gm11627 protein_coding Interval_38757 chr12 81949659 81949962 + 0 NA intron (ENSMUSG00000021140.9, intron 9 of 34) protein_coding-intron (ENSMUSG00000021140.9, intron 10 of 35) -23377 ENSMUSG00000021140.9 ENSMUSG00000021140 ENSMUST00000222468 Pcnx protein_coding Interval_123862 chr5 36054430 36055228 + 0 NA intron (ENSMUSG00000029093.14, intron 9 of 26) protein_coding-intron (ENSMUSG00000029093.14, intron 9 of 26) 70641 ENSMUSG00000029094.12 ENSMUSG00000029094 ENSMUST00000201482 Afap1 protein_coding Interval_173103 chrX 71700824 71701455 + 0 NA Intergenic Intergenic -26518 ENSMUSG00000082337.1 ENSMUSG00000082337 ENSMUST00000118686 Gm14723 processed_pseudogene Interval_109710 chr3 146189639 146190361 + 0 NA promoter-TSS (ENSMUSG00000011008.13) protein_coding-promoter-TSS (ENSMUSG00000011008.13) -365 ENSMUSG00000011008.13 ENSMUSG00000011008 ENSMUST00000169984 Mcoln2 protein_coding Interval_122521 chr5 23566515 23566948 + 0 NA intron (ENSMUSG00000062604.11, intron 2 of 5) protein_coding-intron (ENSMUSG00000062604.11, intron 1 of 14) -24613 ENSMUSG00000062604.11 ENSMUSG00000062604 ENSMUST00000196592 Srpk2 protein_coding Interval_150889 chr7 116191032 116192055 + 0 NA intron (ENSMUSG00000045659.18, intron 3 of 18) protein_coding-intron (ENSMUSG00000045659.18, intron 1 of 20) -62018 ENSMUSG00000045659.18 ENSMUSG00000045659 ENSMUST00000205446 Plekha7 protein_coding Interval_6577 chr1 117433591 117435168 + 0 NA Intergenic Intergenic -40847 ENSMUSG00000101154.1 ENSMUSG00000101154 ENSMUST00000189740 Gm17777 processed_pseudogene Interval_59944 chr15 62131523 62132273 + 0 NA intron (ENSMUSG00000097039.8, intron 2 of 6) lincRNA-intron (ENSMUSG00000097039.8, intron 2 of 8) 24711 ENSMUSG00000099295.1 ENSMUSG00000099295 ENSMUST00000183721 Gm27718 misc_RNA Interval_42916 chr13 21342677 21343411 + 0 NA Intergenic Intergenic -3866 ENSMUSG00000045508.4 ENSMUSG00000045508 ENSMUST00000059216 Olfr1367 protein_coding Interval_70403 chr17 9800829 9802651 + 0 NA Intergenic Intergenic -25874 ENSMUSG00000117264.1 ENSMUSG00000117264 ENSMUST00000233594 4930452A19Rik processed_transcript Interval_70038 chr17 4885040 4885402 + 0 NA intron (ENSMUSG00000116813.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000116813.1, intron 1 of 2) 4595 ENSMUSG00000116620.1 ENSMUSG00000116620 ENSMUST00000231980 Gm4828 processed_pseudogene Interval_108650 chr3 129785658 129786281 + 0 NA Intergenic Intergenic 14552 ENSMUSG00000093865.7 ENSMUSG00000093865 ENSMUST00000188978 Lrit3 protein_coding Interval_47926 chr13 94430076 94431131 + 0 NA intron (ENSMUSG00000021686.6, intron 7 of 26) protein_coding-intron (ENSMUSG00000021686.6, intron 7 of 26) -42260 ENSMUSG00000021686.6 ENSMUSG00000021686 ENSMUST00000220505 Ap3b1 protein_coding Interval_77498 chr17 90270788 90272562 + 0 NA intron (ENSMUSG00000024109.18, intron 2 of 2) protein_coding-intron (ENSMUSG00000024109.18, intron 16 of 20) 9123 ENSMUSG00000092706.1 ENSMUSG00000092706 ENSMUST00000174965 Gm24510 miRNA Interval_34608 chr12 7801554 7801892 + 0 NA intron (ENSMUSG00000112323.1, intron 1 of 3) lincRNA-intron (ENSMUSG00000112323.1, intron 1 of 3) 57968 ENSMUSG00000112323.1 ENSMUSG00000112323 ENSMUST00000218503 Gm32828 lincRNA Interval_56320 chr14 117336915 117337531 + 0 NA intron (ENSMUSG00000058571.11, intron 2 of 9) protein_coding-intron (ENSMUSG00000058571.11, intron 2 of 8) 411692 ENSMUSG00000058571.11 ENSMUSG00000058571 ENSMUST00000078849 Gpc6 protein_coding Interval_79808 chr18 35235413 35235715 + 0 NA intron (ENSMUSG00000037815.7, intron 7 of 15) protein_coding-intron (ENSMUSG00000037815.7, intron 9 of 17) -13809 ENSMUSG00000037815.7 ENSMUSG00000037815 ENSMUST00000237475 Ctnna1 protein_coding Interval_119732 chr4 139573973 139575598 + 0 NA promoter-TSS (ENSMUSG00000041025.15) protein_coding-promoter-TSS (ENSMUSG00000041025.15) 65 ENSMUSG00000041025.15 ENSMUSG00000041025 ENSMUST00000174078 Iffo2 protein_coding Interval_95584 chr2 112492483 112493844 + 0 NA exon (ENSMUSG00000003604.14, exon 1 of 6) protein_coding-exon (ENSMUSG00000003604.14, exon 1 of 6) -7706 ENSMUSG00000080622.1 ENSMUSG00000080622 ENSMUST00000116972 Gm22676 snoRNA Interval_71720 chr17 25679405 25680563 + 0 NA Intergenic Intergenic 14236 ENSMUSG00000096451.1 ENSMUSG00000096451 ENSMUST00000180010 Gm22645 snRNA Interval_150574 chr7 112561926 112562711 + 0 NA intron (ENSMUSG00000030770.15, intron 6 of 13) protein_coding-intron (ENSMUSG00000030770.15, intron 5 of 12) -26635 ENSMUSG00000085049.1 ENSMUSG00000085049 ENSMUST00000154848 Parvaos antisense Interval_37082 chr12 57542143 57543500 + 0 NA exon (ENSMUSG00000035451.7, exon 2 of 2) protein_coding-exon (ENSMUSG00000035451.7, exon 2 of 2) 4095 ENSMUSG00000035451.7 ENSMUSG00000035451 ENSMUST00000218398 Foxa1 protein_coding Interval_27333 chr11 66573727 66574125 + 0 NA Intergenic Intergenic 10319 ENSMUSG00000080978.2 ENSMUSG00000080978 ENSMUST00000121380 Gm12297 processed_pseudogene Interval_27873 chr11 70549042 70549607 + 0 NA intron (ENSMUSG00000020828.13, intron 10 of 24) protein_coding-intron (ENSMUSG00000020828.13, intron 10 of 24) -4636 ENSMUSG00000020828.13 ENSMUSG00000020828 ENSMUST00000146248 Pld2 protein_coding Interval_24620 chr11 35341015 35341350 + 0 NA intron (ENSMUSG00000056427.10, intron 2 of 3) protein_coding-intron (ENSMUSG00000056427.10, intron 4 of 35) -8887 ENSMUSG00000086311.1 ENSMUSG00000086311 ENSMUST00000124503 Gm12122 sense_intronic Interval_4483 chr1 74464376 74464668 + 0 NA intron (ENSMUSG00000033364.13, intron 14 of 19) protein_coding-intron (ENSMUSG00000033364.13, intron 15 of 23) 38779 ENSMUSG00000103227.1 ENSMUSG00000103227 ENSMUST00000195478 Gm37733 TEC Interval_161042 chr8 117108798 117110333 + 0 NA intron (ENSMUSG00000031845.15, intron 4 of 11) protein_coding-intron (ENSMUSG00000031845.15, intron 4 of 10) 13567 ENSMUSG00000031845.15 ENSMUSG00000031845 ENSMUST00000176860 Bco1 protein_coding Interval_90881 chr2 33185124 33185492 + 0 NA intron (ENSMUSG00000038831.16, intron 8 of 17) protein_coding-intron (ENSMUSG00000038831.16, intron 7 of 16) 7406 ENSMUSG00000085087.1 ENSMUSG00000085087 ENSMUST00000139288 Gm13528 antisense Interval_62496 chr15 93489575 93490063 + 0 NA TTS (ENSMUSG00000036167.16) protein_coding-TTS (ENSMUSG00000036167.16) 29704 ENSMUSG00000036158.12 ENSMUSG00000036158 ENSMUST00000048982 Prickle1 protein_coding Interval_16737 chr10 67785780 67786132 + 0 NA exon (ENSMUSG00000112537.1, exon 1 of 1) TEC-exon (ENSMUSG00000112537.1, exon 1 of 1) 207 ENSMUSG00000116971.1 ENSMUSG00000116971 ENSMUST00000232007 Gm49766 lincRNA Interval_103853 chr3 53656258 53658390 + 0 NA promoter-TSS (ENSMUSG00000037016.11) protein_coding-promoter-TSS (ENSMUSG00000037016.11) 10004 ENSMUSG00000105840.1 ENSMUSG00000105840 ENSMUST00000198253 Gm6073 processed_pseudogene Interval_85602 chr19 29019444 29020068 + 0 NA exon (ENSMUSG00000024780.7, exon 7 of 7) protein_coding-exon (ENSMUSG00000024780.7, exon 7 of 7) 7488 ENSMUSG00000024782.7 ENSMUSG00000024782 ENSMUST00000125587 Ak3 protein_coding Interval_147226 chr7 64808999 64810719 + 0 NA intron (ENSMUSG00000030518.17, intron 3 of 6) protein_coding-intron (ENSMUSG00000030518.17, intron 4 of 9) 63138 ENSMUSG00000070520.4 ENSMUSG00000070520 ENSMUST00000094331 Nsmce3 protein_coding Interval_164332 chr9 35405289 35405715 + 0 NA Intergenic Intergenic -18086 ENSMUSG00000038119.15 ENSMUSG00000038119 ENSMUST00000127264 Cdon protein_coding Interval_138694 chr6 91220830 91221576 + 0 NA intron (ENSMUSG00000064080.12, intron 2 of 2) protein_coding-intron (ENSMUSG00000064080.12, intron 1 of 17) 8376 ENSMUSG00000064080.12 ENSMUSG00000064080 ENSMUST00000137029 Fbln2 protein_coding Interval_3304 chr1 56260164 56260356 + 0 NA Intergenic Intergenic -191147 ENSMUSG00000100944.1 ENSMUSG00000100944 ENSMUST00000185232 Gm28900 processed_pseudogene Interval_134736 chr6 31090286 31091395 + 0 NA intron (ENSMUSG00000044471.12, intron 3 of 3) lincRNA-intron (ENSMUSG00000044471.12, intron 3 of 3) -12006 ENSMUSG00000087312.1 ENSMUSG00000087312 ENSMUST00000146766 Gm13833 lincRNA Interval_48364 chr13 98531234 98532289 + 0 NA Intergenic Intergenic -13823 ENSMUSG00000104430.1 ENSMUSG00000104430 ENSMUST00000193184 Gm37425 TEC Interval_126773 chr5 92812775 92813381 + 0 NA intron (ENSMUSG00000029381.16, intron 1 of 9) protein_coding-intron (ENSMUSG00000029381.16, intron 1 of 9) -24516 ENSMUSG00000089268.1 ENSMUSG00000089268 ENSMUST00000158643 Mir1961 miRNA Interval_88707 chr2 9903869 9904591 + 0 NA Intergenic Intergenic -1948 ENSMUSG00000075534.5 ENSMUSG00000075534 ENSMUST00000149014 Gm13262 antisense Interval_148508 chr7 81945017 81946208 + 0 NA Intergenic Intergenic -11589 ENSMUSG00000025104.13 ENSMUSG00000025104 ENSMUST00000149288 Hdgfl3 protein_coding Interval_138536 chr6 89005273 89005526 + 0 NA intron (ENSMUSG00000055403.13, intron 1 of 2) lincRNA-intron (ENSMUSG00000055403.13, intron 1 of 2) 54716 ENSMUSG00000055403.13 ENSMUSG00000055403 ENSMUST00000153981 4933427D06Rik lincRNA Interval_150628 chr7 112908413 112909997 + 0 NA Intergenic Intergenic -44757 ENSMUSG00000098132.1 ENSMUSG00000098132 ENSMUST00000182858 Rassf10 protein_coding Interval_82964 chr18 80040209 80042252 + 0 NA Intergenic Intergenic -5660 ENSMUSG00000056214.9 ENSMUSG00000056214 ENSMUST00000070219 Pard6g protein_coding Interval_139636 chr6 104064274 104065573 + 0 NA Intergenic Intergenic -100284 ENSMUSG00000108172.1 ENSMUSG00000108172 ENSMUST00000203981 Gm21054 processed_pseudogene Interval_113403 chr4 54587248 54588014 + 0 NA Intergenic Intergenic 23008 ENSMUSG00000081428.1 ENSMUSG00000081428 ENSMUST00000120548 Tpt1-ps2 processed_pseudogene Interval_46476 chr13 66447524 66447761 + 0 NA intron (ENSMUSG00000114616.1, intron 2 of 2) lincRNA-intron (ENSMUSG00000114616.1, intron 2 of 2) -6524 ENSMUSG00000074832.11 ENSMUSG00000074832 ENSMUST00000172579 2410141K09Rik protein_coding Interval_173514 chrX 97431474 97431755 + 0 NA Intergenic Intergenic -54442 ENSMUSG00000034457.10 ENSMUSG00000034457 ENSMUST00000126609 Eda2r protein_coding Interval_108794 chr3 131298618 131298883 + 0 NA intron (ENSMUSG00000027983.13, intron 1 of 3) protein_coding-intron (ENSMUSG00000027983.13, intron 1 of 4) -3893 ENSMUSG00000097761.1 ENSMUSG00000097761 ENSMUST00000181438 4930534D22Rik antisense Interval_139540 chr6 100870736 100871387 + 0 NA Intergenic Intergenic 18576 ENSMUSG00000052144.8 ENSMUSG00000052144 ENSMUST00000203067 Ppp4r2 protein_coding Interval_145428 chr7 34702695 34703152 + 0 NA intron (ENSMUSG00000060402.8, intron 2 of 2) protein_coding-intron (ENSMUSG00000060402.8, intron 2 of 3) -28924 ENSMUSG00000087127.1 ENSMUSG00000087127 ENSMUST00000126294 Gm12756 lincRNA Interval_156922 chr8 61700298 61700914 + 0 NA intron (ENSMUSG00000058056.16, intron 7 of 8) protein_coding-intron (ENSMUSG00000058056.16, intron 8 of 19) 120910 ENSMUSG00000110131.1 ENSMUSG00000110131 ENSMUST00000210904 Gm18066 processed_pseudogene Interval_172100 chrX 7568957 7569628 + 0 NA intron (ENSMUSG00000103436.1, intron 14 of 16) protein_coding-intron (ENSMUSG00000039556.16, intron 1 of 3) 4991 ENSMUSG00000039556.16 ENSMUSG00000039556 ENSMUST00000123090 Ppp1r3f protein_coding Interval_36574 chr12 50697656 50697896 + 0 NA Intergenic Intergenic -48678 ENSMUSG00000002688.8 ENSMUSG00000002688 ENSMUST00000002765 Prkd1 protein_coding Interval_48779 chr13 103128745 103129702 + 0 NA intron (ENSMUSG00000034751.17, intron 3 of 3) protein_coding-intron (ENSMUSG00000034751.17, intron 3 of 4) 31615 ENSMUSG00000091577.2 ENSMUSG00000091577 ENSMUST00000167849 Gm6211 transcribed_processed_pseudogene Interval_120120 chr4 141951675 141952800 + 0 NA promoter-TSS (ENSMUSG00000051435.11) protein_coding-promoter-TSS (ENSMUSG00000051435.11) -24542 ENSMUSG00000081079.1 ENSMUSG00000081079 ENSMUST00000119881 Gm13059 processed_pseudogene Interval_38535 chr12 79944603 79944810 + 0 NA Intergenic Intergenic -5067 ENSMUSG00000112646.1 ENSMUSG00000112646 ENSMUST00000217787 Gm5654 processed_pseudogene Interval_106016 chr3 90644015 90644620 + 0 NA Intergenic Intergenic 7549 ENSMUSG00000105644.1 ENSMUSG00000105644 ENSMUST00000195941 Gm19739 processed_pseudogene Interval_26241 chr11 55386254 55388165 + 0 NA Intergenic Intergenic 33116 ENSMUSG00000018593.13 ENSMUSG00000018593 ENSMUST00000125787 Sparc protein_coding Interval_110971 chr4 10966052 10968659 + 0 NA Intergenic Intergenic 20747 ENSMUSG00000081715.1 ENSMUSG00000081715 ENSMUST00000117608 Rps11-ps3 processed_pseudogene Interval_161532 chr8 121016721 121017447 + 0 NA intron (ENSMUSG00000092329.1, intron 1 of 15) protein_coding-intron (ENSMUSG00000092329.1, intron 1 of 15) 14157 ENSMUSG00000101886.1 ENSMUSG00000101886 ENSMUST00000187913 Gm28324 lincRNA Interval_100742 chr2 172278999 172279773 + 0 NA Intergenic Intergenic -8747 ENSMUSG00000085949.1 ENSMUSG00000085949 ENSMUST00000152112 Gm14275 lincRNA Interval_99936 chr2 166002550 166003254 + 0 NA intron (ENSMUSG00000027678.17, intron 1 of 22) protein_coding-intron (ENSMUSG00000027678.17, intron 1 of 22) -10385 ENSMUSG00000087351.1 ENSMUSG00000087351 ENSMUST00000146963 Gm11464 lincRNA Interval_142781 chr6 145615505 145616447 + 0 NA exon (ENSMUSG00000067338.6, exon 1 of 5) protein_coding-exon (ENSMUSG00000067338.6, exon 1 of 5) 219 ENSMUSG00000067338.6 ENSMUSG00000067338 ENSMUST00000087445 Tuba3b protein_coding Interval_39113 chr12 85168950 85170361 + 0 NA exon (ENSMUSG00000004791.7, exon 1 of 2) protein_coding-exon (ENSMUSG00000004791.7, exon 1 of 2) 8135 ENSMUSG00000004791.7 ENSMUSG00000004791 ENSMUST00000222850 Pgf protein_coding Interval_139860 chr6 111813678 111814594 + 0 NA Intergenic Intergenic -177974 ENSMUSG00000089490.1 ENSMUSG00000089490 ENSMUST00000158865 Gm26362 misc_RNA Interval_133030 chr5 149403632 149403978 + 0 NA intron (ENSMUSG00000107314.1, intron 3 of 8) processed_transcript-intron (ENSMUSG00000107314.1, intron 3 of 8) 4315 ENSMUSG00000107152.1 ENSMUSG00000107152 ENSMUST00000202495 Gm43152 TEC Interval_95140 chr2 104207905 104209178 + 0 NA intron (ENSMUSG00000068373.15, intron 10 of 10) protein_coding-intron (ENSMUSG00000068373.15, intron 12 of 20) 19697 ENSMUSG00000089606.1 ENSMUSG00000089606 ENSMUST00000158981 Gm22501 snoRNA Interval_101235 chr2 179697983 179698345 + 0 NA intron (ENSMUSG00000000305.12, intron 2 of 2) protein_coding-intron (ENSMUSG00000000305.12, intron 2 of 15) -78999 ENSMUSG00000000305.12 ENSMUSG00000000305 ENSMUST00000098996 Cdh4 protein_coding Interval_87 GL456221.1 83302 84561 + 0 NA NA NA NA NA Interval_121616 chr5 3936916 3937168 + 0 NA intron (ENSMUSG00000040407.18, intron 1 of 7) protein_coding-intron (ENSMUSG00000040407.18, intron 1 of 47) -43146 ENSMUSG00000040429.6 ENSMUSG00000040429 ENSMUST00000196417 Mterf1a protein_coding Interval_35959 chr12 32851860 32852123 + 0 NA exon (ENSMUSG00000020572.8, exon 11 of 11) protein_coding-exon (ENSMUSG00000020572.8, exon 11 of 11) -26314 ENSMUSG00000112166.1 ENSMUSG00000112166 ENSMUST00000219636 Gm47948 lincRNA Interval_139570 chr6 101306501 101307023 + 0 NA intron (ENSMUSG00000035357.17, intron 3 of 3) protein_coding-intron (ENSMUSG00000035357.17, intron 3 of 9) -18252 ENSMUSG00000108076.1 ENSMUSG00000108076 ENSMUST00000203503 9530086O07Rik TEC Interval_111205 chr4 14819638 14820484 + 0 NA intron (ENSMUSG00000040550.17, intron 3 of 7) protein_coding-intron (ENSMUSG00000040550.17, intron 3 of 6) 6526 ENSMUSG00000040550.17 ENSMUSG00000040550 ENSMUST00000151012 Otud6b protein_coding Interval_149553 chr7 99534735 99536060 + 0 NA promoter-TSS (ENSMUSG00000018909.15) protein_coding-promoter-TSS (ENSMUSG00000018909.15) -69 ENSMUSG00000018909.15 ENSMUSG00000018909 ENSMUST00000162290 Arrb1 protein_coding Interval_159624 chr8 95842519 95842808 + 0 NA promoter-TSS (ENSMUSG00000036534.6) protein_coding-promoter-TSS (ENSMUSG00000036534.6) -8988 ENSMUSG00000110661.1 ENSMUSG00000110661 ENSMUST00000211921 Gm31805 lincRNA Interval_82878 chr18 78161473 78161791 + 0 NA intron (ENSMUSG00000024552.16, intron 13 of 21) protein_coding-intron (ENSMUSG00000024552.16, intron 10 of 18) -19513 ENSMUSG00000059336.14 ENSMUSG00000059336 ENSMUST00000160639 Slc14a1 protein_coding Interval_88596 chr2 6469089 6469696 + 0 NA Intergenic Intergenic -2608 ENSMUSG00000086109.2 ENSMUSG00000086109 ENSMUST00000128589 Gm13391 lincRNA Interval_10703 chr1 173356429 173356657 + 0 NA intron (ENSMUSG00000037860.15, intron 1 of 11) protein_coding-intron (ENSMUSG00000005338.13, intron 1 of 9) 11105 ENSMUSG00000005338.13 ENSMUSG00000005338 ENSMUST00000126963 Cadm3 protein_coding Interval_127004 chr5 99435981 99436213 + 0 NA intron (ENSMUSG00000089809.9, intron 3 of 16) protein_coding-intron (ENSMUSG00000089809.9, intron 2 of 3) -72292 ENSMUSG00000104753.1 ENSMUSG00000104753 ENSMUST00000196037 Gm35172 lincRNA Interval_168090 chr9 76188958 76189704 + 0 NA intron (ENSMUSG00000059383.14, intron 5 of 7) protein_coding-intron (ENSMUSG00000059383.14, intron 6 of 8) 24326 ENSMUSG00000059383.14 ENSMUSG00000059383 ENSMUST00000074880 Gfral protein_coding Interval_136489 chr6 54893426 54893629 + 0 NA TTS (ENSMUSG00000058446.14) protein_coding-TTS (ENSMUSG00000058446.14) -8895 ENSMUSG00000107841.1 ENSMUSG00000107841 ENSMUST00000204539 Gm44185 TEC Interval_2759 chr1 44245151 44245326 + 0 NA Intergenic Intergenic -26325 ENSMUSG00000046828.3 ENSMUSG00000046828 ENSMUST00000150062 Mettl21e protein_coding Interval_80780 chr18 47014164 47014648 + 0 NA intron (ENSMUSG00000042705.9, intron 5 of 6) protein_coding-intron (ENSMUSG00000042705.9, intron 5 of 6) -28925 ENSMUSG00000087857.1 ENSMUSG00000087857 ENSMUST00000157232 Gm22791 snoRNA Interval_12433 chr1 193403335 193403612 + 0 NA Intergenic Intergenic -33248 ENSMUSG00000016179.11 ENSMUSG00000016179 ENSMUST00000165718 Camk1g protein_coding Interval_141004 chr6 124288900 124289070 + 0 NA Intergenic Intergenic -8878 ENSMUSG00000107600.1 ENSMUSG00000107600 ENSMUST00000203226 Gm6308 processed_pseudogene Interval_59877 chr15 60554545 60556641 + 0 NA Intergenic Intergenic 87469 ENSMUSG00000115503.1 ENSMUSG00000115503 ENSMUST00000227906 Gm6392 processed_pseudogene Interval_35642 chr12 26490093 26490368 + 0 NA Intergenic Intergenic -3439 ENSMUSG00000113059.1 ENSMUSG00000113059 ENSMUST00000220530 Gm46344 processed_pseudogene Interval_81315 chr18 57871731 57871934 + 0 NA Intergenic Intergenic -55373 ENSMUSG00000024597.11 ENSMUSG00000024597 ENSMUST00000236673 Slc12a2 protein_coding Interval_61390 chr15 81293396 81293632 + 0 NA intron (ENSMUSG00000115970.1, intron 1 of 3) lincRNA-intron (ENSMUSG00000115970.1, intron 1 of 3) -41652 ENSMUSG00000115970.1 ENSMUSG00000115970 ENSMUST00000230042 8430426J06Rik lincRNA Interval_48508 chr13 99550968 99551263 + 0 NA Intergenic Intergenic -10327 ENSMUSG00000114578.1 ENSMUSG00000114578 ENSMUST00000224215 Gm47158 processed_pseudogene Interval_99483 chr2 162282809 162283180 + 0 NA intron (ENSMUSG00000053141.16, intron 2 of 29) protein_coding-intron (ENSMUSG00000053141.16, intron 2 of 30) -107819 ENSMUSG00000084919.1 ENSMUSG00000084919 ENSMUST00000151688 Ptprtos antisense Interval_30857 chr11 96903158 96903438 + 0 NA Intergenic Intergenic 12809 ENSMUSG00000018669.14 ENSMUSG00000018669 ENSMUST00000130767 Cdk5rap3 protein_coding Interval_67496 chr16 49915417 49917390 + 0 NA Intergenic Intergenic 60758 ENSMUSG00000055447.19 ENSMUSG00000055447 ENSMUST00000229104 Cd47 protein_coding Interval_61866 chr15 84754651 84756918 + 0 NA intron (ENSMUSG00000078954.9, intron 1 of 2) protein_coding-intron (ENSMUSG00000078954.9, intron 6 of 12) 31665 ENSMUSG00000016624.15 ENSMUSG00000016624 ENSMUST00000160389 Phf21b protein_coding Interval_144760 chr7 28073549 28073845 + 0 NA intron (ENSMUSG00000047730.17, intron 1 of 2) protein_coding-intron (ENSMUSG00000047730.17, intron 2 of 19) 18965 ENSMUSG00000109262.1 ENSMUSG00000109262 ENSMUST00000208234 Gm44744 lincRNA Interval_128969 chr5 116380567 116383513 + 0 NA promoter-TSS (ENSMUSG00000106766.1) TEC-promoter-TSS (ENSMUSG00000106766.1) -405 ENSMUSG00000106766.1 ENSMUSG00000106766 ENSMUST00000200749 4933424N20Rik TEC Interval_154616 chr8 22085650 22085872 + 0 NA intron (ENSMUSG00000037738.11, intron 15 of 18) protein_coding-intron (ENSMUSG00000037738.11, intron 15 of 19) 16745 ENSMUSG00000063362.13 ENSMUSG00000063362 ENSMUST00000134474 Alg11 protein_coding Interval_121296 chr4 154797927 154798310 + 0 NA Intergenic Intergenic -39341 ENSMUSG00000046637.3 ENSMUSG00000046637 ENSMUST00000137684 Ttc34 protein_coding Interval_36953 chr12 55564250 55566475 + 0 NA exon (ENSMUSG00000063129.1, exon 1 of 1) protein_coding-exon (ENSMUSG00000063129.1, exon 1 of 1) 123 ENSMUSG00000063129.1 ENSMUSG00000063129 ENSMUST00000080123 Aldoart2 protein_coding Interval_149898 chr7 102417530 102417919 + 0 NA intron (ENSMUSG00000030987.5, intron 6 of 12) protein_coding-intron (ENSMUSG00000030987.5, intron 6 of 11) -38746 ENSMUSG00000030978.10 ENSMUSG00000030978 ENSMUST00000209630 Rrm1 protein_coding Interval_81713 chr18 63787582 63788497 + 0 NA intron (ENSMUSG00000040560.10, intron 2 of 3) protein_coding-intron (ENSMUSG00000040560.10, intron 16 of 27) -24822 ENSMUSG00000117977.1 ENSMUSG00000117977 ENSMUST00000236836 Gm50106 antisense Interval_138864 chr6 92743330 92744268 + 0 NA Intergenic Intergenic -83833 ENSMUSG00000048636.7 ENSMUSG00000048636 ENSMUST00000133858 A730049H05Rik protein_coding Interval_17786 chr10 80073003 80073347 + 0 NA intron (ENSMUSG00000035673.10, intron 5 of 32) protein_coding-intron (ENSMUSG00000035673.10, intron 4 of 31) 18710 ENSMUSG00000075706.10 ENSMUSG00000075706 ENSMUST00000136081 Gpx4 protein_coding Interval_130632 chr5 129343557 129343835 + 0 NA Intergenic Intergenic -20424 ENSMUSG00000104681.1 ENSMUSG00000104681 ENSMUST00000199076 Gm43001 lincRNA Interval_48483 chr13 99367125 99367414 + 0 NA intron (ENSMUSG00000041632.7, intron 4 of 5) protein_coding-intron (ENSMUSG00000041632.7, intron 4 of 10) 21725 ENSMUSG00000041632.7 ENSMUSG00000041632 ENSMUST00000225973 Mrps27 protein_coding Interval_122166 chr5 18512324 18512597 + 0 NA Intergenic Intergenic -22266 ENSMUSG00000104718.1 ENSMUSG00000104718 ENSMUST00000199456 Gm31752 lincRNA Interval_98153 chr2 148845552 148845830 + 0 NA Intergenic Intergenic 10544 ENSMUSG00000027445.3 ENSMUSG00000027445 ENSMUST00000028935 Cst9 protein_coding Interval_61253 chr15 80271685 80272517 + 0 NA Intergenic Intergenic -7855 ENSMUSG00000051518.8 ENSMUSG00000051518 ENSMUST00000229962 Rps19bp1 protein_coding Interval_52687 chr14 48593660 48594702 + 0 NA intron (ENSMUSG00000115636.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000115636.1, intron 1 of 1) 3582 ENSMUSG00000115636.1 ENSMUSG00000115636 ENSMUST00000228323 Gm49120 lincRNA Interval_99214 chr2 158130485 158130822 + 0 NA exon (ENSMUSG00000037820.15, exon 6 of 6) protein_coding-exon (ENSMUSG00000037820.15, exon 6 of 6) 13499 ENSMUSG00000092283.1 ENSMUSG00000092283 ENSMUST00000173249 Gm20412 processed_transcript Interval_891 chr1 13029028 13030023 + 0 NA Intergenic Intergenic 30426 ENSMUSG00000104518.1 ENSMUSG00000104518 ENSMUST00000191708 Gm37162 TEC Interval_133515 chr6 6108993 6109794 + 0 NA intron (ENSMUSG00000015112.15, intron 10 of 17) protein_coding-intron (ENSMUSG00000015112.15, intron 10 of 17) 64558 ENSMUSG00000015112.15 ENSMUSG00000015112 ENSMUST00000177698 Slc25a13 protein_coding Interval_46376 chr13 64329362 64329935 + 0 NA Intergenic Intergenic -6730 ENSMUSG00000118556.1 ENSMUSG00000118556 ENSMUST00000238814 CT030159.1 processed_pseudogene Interval_105459 chr3 86796485 86797144 + 0 NA intron (ENSMUSG00000028078.14, intron 12 of 15) protein_coding-intron (ENSMUSG00000028078.14, intron 12 of 15) -18161 ENSMUSG00000104108.1 ENSMUSG00000104108 ENSMUST00000194490 Gm37876 antisense Interval_163383 chr9 21190065 21190619 + 0 NA intron (ENSMUSG00000032177.17, intron 1 of 1) protein_coding-intron (ENSMUSG00000032177.17, intron 1 of 14) 6241 ENSMUSG00000032177.17 ENSMUSG00000032177 ENSMUST00000003395 Pde4a protein_coding Interval_17444 chr10 76770795 76771759 + 0 NA intron (ENSMUSG00000001120.15, intron 9 of 13) protein_coding-intron (ENSMUSG00000001120.15, intron 11 of 15) 17145 ENSMUSG00000001120.15 ENSMUSG00000001120 ENSMUST00000165571 Pcbp3 protein_coding Interval_22944 chr11 17739060 17739446 + 0 NA Intergenic Intergenic -100070 ENSMUSG00000082411.1 ENSMUSG00000082411 ENSMUST00000119079 Gm12016 processed_pseudogene Interval_80436 chr18 42206650 42207771 + 0 NA intron (ENSMUSG00000024493.9, intron 4 of 4) protein_coding-intron (ENSMUSG00000024493.9, intron 31 of 31) 6467 ENSMUSG00000117753.1 ENSMUSG00000117753 ENSMUST00000236748 Gm5504 processed_pseudogene Interval_104071 chr3 58163676 58164286 + 0 NA promoter-TSS (ENSMUSG00000100666.1) lincRNA-promoter-TSS (ENSMUSG00000100666.1) 49 ENSMUSG00000104586.1 ENSMUSG00000104586 ENSMUST00000200072 4921539H07Rik lincRNA Interval_32552 chr11 108484781 108485865 + 0 NA intron (ENSMUSG00000020728.17, intron 6 of 24) protein_coding-intron (ENSMUSG00000020728.17, intron 7 of 27) 48341 ENSMUSG00000086761.1 ENSMUSG00000086761 ENSMUST00000137907 Cep112os1 antisense Interval_142350 chr6 140779211 140779632 + 0 NA Intergenic Intergenic 5283 ENSMUSG00000108039.1 ENSMUSG00000108039 ENSMUST00000203498 Gm43925 processed_pseudogene Interval_158951 chr8 88187578 88188675 + 0 NA Intergenic Intergenic 13566 ENSMUSG00000062704.3 ENSMUSG00000062704 ENSMUST00000185395 9430002A10Rik lincRNA Interval_153230 chr7 142655707 142656329 + 0 NA promoter-TSS (ENSMUSG00000048583.16) protein_coding-promoter-TSS (ENSMUSG00000048583.16) 0 ENSMUSG00000048583.16 ENSMUSG00000048583 ENSMUST00000143666 Igf2 protein_coding Interval_168737 chr9 86559751 86560266 + 0 NA intron (ENSMUSG00000056131.13, intron 8 of 10) protein_coding-intron (ENSMUSG00000056131.13, intron 8 of 12) -2068 ENSMUSG00000056131.13 ENSMUSG00000056131 ENSMUST00000187251 Pgm3 protein_coding Interval_64941 chr16 17395062 17396152 + 0 NA intron (ENSMUSG00000041720.14, intron 1 of 54) protein_coding-intron (ENSMUSG00000041720.14, intron 1 of 54) -10379 ENSMUSG00000022765.10 ENSMUSG00000022765 ENSMUST00000023449 Snap29 protein_coding Interval_125220 chr5 65448900 65449185 + 0 NA TTS (ENSMUSG00000037822.12) protein_coding-TTS (ENSMUSG00000037822.12) 9469 ENSMUSG00000037822.12 ENSMUSG00000037822 ENSMUST00000198981 Smim14 protein_coding Interval_8956 chr1 152721057 152722170 + 0 NA intron (ENSMUSG00000026482.13, intron 1 of 18) protein_coding-intron (ENSMUSG00000026482.13, intron 1 of 17) 8946 ENSMUSG00000080950.1 ENSMUSG00000080950 ENSMUST00000119836 Gm7278 processed_pseudogene Interval_57509 chr15 11971715 11973157 + 0 NA Intergenic Intergenic 5676 ENSMUSG00000099349.7 ENSMUSG00000099349 ENSMUST00000190000 1700047G03Rik lincRNA Interval_141321 chr6 127207156 127207751 + 0 NA intron (ENSMUSG00000097166.1, intron 2 of 2) antisense-intron (ENSMUSG00000097166.1, intron 1 of 1) -23735 ENSMUSG00000106755.1 ENSMUSG00000106755 ENSMUST00000202145 Tpi-rs11 processed_pseudogene Interval_156956 chr8 62368575 62369245 + 0 NA Intergenic Intergenic 119578 ENSMUSG00000109687.1 ENSMUSG00000109687 ENSMUST00000210003 Hspd1-ps2 processed_pseudogene Interval_169182 chr9 95328959 95329283 + 0 NA Intergenic Intergenic 77601 ENSMUSG00000033350.7 ENSMUSG00000033350 ENSMUST00000036267 Chst2 protein_coding Interval_129604 chr5 121267019 121267260 + 0 NA intron (ENSMUSG00000042744.16, intron 7 of 75) protein_coding-intron (ENSMUSG00000042744.16, intron 7 of 75) -19091 ENSMUSG00000042744.16 ENSMUSG00000042744 ENSMUST00000130655 Hectd4 protein_coding Interval_24182 chr11 31062056 31063117 + 0 NA TTS (ENSMUSG00000020305.13) protein_coding-TTS (ENSMUSG00000020305.13) -57417 ENSMUSG00000082049.1 ENSMUSG00000082049 ENSMUST00000120846 Gm12105 processed_pseudogene Interval_57145 chr15 6912985 6913489 + 0 NA Intergenic Intergenic -38980 ENSMUSG00000022146.12 ENSMUSG00000022146 ENSMUST00000177263 Osmr protein_coding Interval_28804 chr11 78426973 78428623 + 0 NA Intergenic Intergenic -5581 ENSMUSG00000001095.5 ENSMUSG00000001095 ENSMUST00000001122 Slc13a2 protein_coding Interval_138194 chr6 86110426 86110988 + 0 NA intron (ENSMUSG00000030000.10, intron 14 of 15) protein_coding-intron (ENSMUSG00000030000.10, intron 14 of 15) -23627 ENSMUSG00000107842.1 ENSMUSG00000107842 ENSMUST00000203624 Gm44089 antisense Interval_151101 chr7 118554027 118554699 + 0 NA intron (ENSMUSG00000042246.5, intron 6 of 10) protein_coding-intron (ENSMUSG00000042246.5, intron 6 of 15) -21066 ENSMUSG00000030652.11 ENSMUSG00000030652 ENSMUST00000127700 Coq7 protein_coding Interval_111 GL456239.1 12244 12869 + 0 NA NA NA NA NA Interval_102797 chr3 31110771 31110959 + 0 NA intron (ENSMUSG00000027660.16, intron 2 of 6) protein_coding-intron (ENSMUSG00000027660.16, intron 2 of 6) 15804 ENSMUSG00000027660.16 ENSMUSG00000027660 ENSMUST00000118204 Skil protein_coding Interval_158948 chr8 88178123 88178638 + 0 NA Intergenic Intergenic 3820 ENSMUSG00000062704.3 ENSMUSG00000062704 ENSMUST00000185395 9430002A10Rik lincRNA Interval_97433 chr2 136148759 136150550 + 0 NA intron (ENSMUSG00000039913.12, intron 3 of 9) protein_coding-intron (ENSMUSG00000039913.12, intron 4 of 10) 12648 ENSMUSG00000085383.1 ENSMUSG00000085383 ENSMUST00000137802 Gm14218 antisense Interval_80304 chr18 39008761 39010168 + 0 NA intron (ENSMUSG00000036452.18, intron 1 of 22) protein_coding-intron (ENSMUSG00000036452.18, intron 1 of 22) -15272 ENSMUSG00000086991.1 ENSMUSG00000086991 ENSMUST00000131421 Gm15334 antisense Interval_74377 chr17 49746695 49747098 + 0 NA intron (ENSMUSG00000023999.14, intron 1 of 2) protein_coding-intron (ENSMUSG00000023999.14, intron 10 of 11) 74929 ENSMUSG00000090012.1 ENSMUSG00000090012 ENSMUST00000159971 Gm16555 antisense Interval_115123 chr4 91214305 91214680 + 0 NA Intergenic Intergenic 57810 ENSMUSG00000081876.1 ENSMUSG00000081876 ENSMUST00000119935 Gm12644 processed_pseudogene Interval_148244 chr7 80056926 80057494 + 0 NA intron (ENSMUSG00000048897.15, intron 1 of 1) protein_coding-intron (ENSMUSG00000048897.15, intron 1 of 4) 18037 ENSMUSG00000108714.1 ENSMUSG00000108714 ENSMUST00000206022 Gm21057 antisense Interval_58974 chr15 41189372 41189615 + 0 NA Intergenic Intergenic 16006 ENSMUSG00000048559.5 ENSMUSG00000048559 ENSMUST00000060066 4930555K19Rik processed_pseudogene Interval_156523 chr8 49449902 49450112 + 0 NA intron (ENSMUSG00000031559.15, intron 6 of 9) lincRNA-intron (ENSMUSG00000031559.15, intron 3 of 6) 14732 ENSMUSG00000110137.1 ENSMUSG00000110137 ENSMUST00000210206 Gm45577 TEC Interval_95301 chr2 105948675 105948891 + 0 NA intron (ENSMUSG00000042670.5, intron 5 of 6) protein_coding-intron (ENSMUSG00000042670.5, intron 5 of 6) -43974 ENSMUSG00000093363.1 ENSMUSG00000093363 ENSMUST00000175622 Gm22002 miRNA Interval_69763 chr16 96104359 96104550 + 0 NA intron (ENSMUSG00000117270.1, intron 2 of 4) lincRNA-intron (ENSMUSG00000117270.1, intron 2 of 4) 7249 ENSMUSG00000117270.1 ENSMUSG00000117270 ENSMUST00000233464 Gm49953 lincRNA Interval_34768 chr12 10598319 10598816 + 0 NA Intergenic Intergenic 105067 ENSMUSG00000112127.1 ENSMUSG00000112127 ENSMUST00000219091 Gm48886 processed_pseudogene Interval_95930 chr2 118510247 118510992 + 0 NA Intergenic Intergenic -26442 ENSMUSG00000084028.1 ENSMUSG00000084028 ENSMUST00000118018 Gm13983 processed_pseudogene Interval_159167 chr8 91329455 91330515 + 0 NA intron (ENSMUSG00000055932.15, intron 1 of 6) protein_coding-intron (ENSMUSG00000055932.15, intron 1 of 8) 16371 ENSMUSG00000055932.15 ENSMUSG00000055932 ENSMUST00000140276 Fto protein_coding Interval_31809 chr11 103054469 103055078 + 0 NA intron (ENSMUSG00000020936.8, intron 3 of 5) protein_coding-intron (ENSMUSG00000020936.8, intron 4 of 11) 26188 ENSMUSG00000020936.8 ENSMUSG00000020936 ENSMUST00000148795 Nmt1 protein_coding Interval_69173 chr16 91123603 91123903 + 0 NA Intergenic Intergenic -9154 ENSMUSG00000081176.1 ENSMUSG00000081176 ENSMUST00000119544 H3f3a-ps2 processed_pseudogene Interval_86217 chr19 37865749 37866303 + 0 NA Intergenic Intergenic -4244 ENSMUSG00000118115.1 ENSMUSG00000118115 ENSMUST00000237198 Gm4757 processed_pseudogene Interval_130770 chr5 130280882 130281773 + 0 NA intron (ENSMUSG00000056310.14, intron 8 of 8) protein_coding-intron (ENSMUSG00000056310.14, intron 8 of 15) 25708 ENSMUSG00000056310.14 ENSMUSG00000056310 ENSMUST00000147619 Tyw1 protein_coding Interval_89488 chr2 20978551 20980477 + 0 NA Intergenic Intergenic 10460 ENSMUSG00000075514.4 ENSMUSG00000075514 ENSMUST00000126967 Gm13375 antisense Interval_142465 chr6 142570293 142572163 + 0 NA exon (ENSMUSG00000030247.9, exon 1 of 3) protein_coding-exon (ENSMUSG00000030247.9, exon 1 of 3) 386 ENSMUSG00000030247.9 ENSMUSG00000030247 ENSMUST00000032374 Kcnj8 protein_coding Interval_98918 chr2 156016881 156017073 + 0 NA promoter-TSS (ENSMUSG00000005881.13) protein_coding-promoter-TSS (ENSMUSG00000005881.13) 6530 ENSMUSG00000005881.13 ENSMUSG00000005881 ENSMUST00000149381 Ergic3 protein_coding Interval_100489 chr2 169540630 169541320 + 0 NA Intergenic Intergenic 46770 ENSMUSG00000078912.2 ENSMUSG00000078912 ENSMUST00000109160 Gm11011 protein_coding Interval_102947 chr3 33142164 33143712 + 0 NA exon (ENSMUSG00000027674.16, exon 1 of 11) protein_coding-exon (ENSMUSG00000027674.16, exon 1 of 11) 245 ENSMUSG00000027674.16 ENSMUSG00000027674 ENSMUST00000194627 Pex5l protein_coding Interval_19767 chr10 108597541 108597882 + 0 NA intron (ENSMUSG00000035864.14, intron 9 of 11) protein_coding-intron (ENSMUSG00000035864.14, intron 8 of 10) 102449 ENSMUSG00000112039.1 ENSMUSG00000112039 ENSMUST00000218023 Gm5136 protein_coding Interval_124676 chr5 53133520 53134458 + 0 NA intron (ENSMUSG00000029189.10, intron 16 of 23) protein_coding-intron (ENSMUSG00000029189.10, intron 16 of 23) -9171 ENSMUSG00000077316.1 ENSMUSG00000077316 ENSMUST00000104128 n-R5s171 rRNA Interval_22842 chr11 16564749 16565405 + 0 NA Intergenic Intergenic 50544 ENSMUSG00000084347.3 ENSMUSG00000084347 ENSMUST00000120718 Akt2-ps processed_pseudogene Interval_16396 chr10 62720677 62720875 + 0 NA intron (ENSMUSG00000036923.12, intron 1 of 3) protein_coding-intron (ENSMUSG00000036923.12, intron 2 of 3) 5025 ENSMUSG00000036923.12 ENSMUSG00000036923 ENSMUST00000126979 Stox1 protein_coding Interval_147817 chr7 73757964 73759177 + 0 NA intron (ENSMUSG00000078670.3, intron 1 of 2) protein_coding-intron (ENSMUSG00000078670.3, intron 1 of 2) 3981 ENSMUSG00000108412.1 ENSMUSG00000108412 ENSMUST00000206640 Gm45005 TEC Interval_81833 chr18 65122097 65123211 + 0 NA intron (ENSMUSG00000024589.18, intron 1 of 1) protein_coding-intron (ENSMUSG00000024589.18, intron 4 of 29) 39600 ENSMUSG00000024589.18 ENSMUSG00000024589 ENSMUST00000236100 Nedd4l protein_coding Interval_98490 chr2 152753673 152754714 + 0 NA promoter-TSS (ENSMUSG00000009876.13) protein_coding-promoter-TSS (ENSMUSG00000009876.13) -901 ENSMUSG00000009876.13 ENSMUSG00000009876 ENSMUST00000109821 Cox4i2 protein_coding Interval_64677 chr16 14113638 14113913 + 0 NA intron (ENSMUSG00000060657.8, intron 26 of 26) protein_coding-intron (ENSMUSG00000060657.8, intron 26 of 26) 14856 ENSMUSG00000098652.1 ENSMUSG00000098652 ENSMUST00000183739 Gm27671 miRNA Interval_146456 chr7 46052128 46053162 + 0 NA intron (ENSMUSG00000030835.6, intron 11 of 30) protein_coding-intron (ENSMUSG00000030835.6, intron 11 of 30) -1515 ENSMUSG00000030835.6 ENSMUSG00000030835 ENSMUST00000182305 Nomo1 protein_coding Interval_103824 chr3 53434735 53435217 + 0 NA Intergenic Intergenic -17643 ENSMUSG00000085174.1 ENSMUSG00000085174 ENSMUST00000132485 Gm16206 antisense Interval_25905 chr11 52448303 52450136 + 0 NA Intergenic Intergenic 29884 ENSMUSG00000081297.1 ENSMUSG00000081297 ENSMUST00000120089 Gm12209 processed_pseudogene Interval_44191 chr13 41800979 41802301 + 0 NA exon (ENSMUSG00000085759.1, exon 2 of 2) antisense-exon (ENSMUSG00000085759.1, exon 2 of 2) 857 ENSMUSG00000085759.1 ENSMUSG00000085759 ENSMUST00000154159 1700061E18Rik antisense Interval_47581 chr13 89508953 89509156 + 0 NA Intergenic Intergenic 69365 ENSMUSG00000094463.2 ENSMUSG00000094463 ENSMUST00000178288 Gm8546 processed_pseudogene Interval_99431 chr2 161001969 161002253 + 0 NA intron (ENSMUSG00000057133.14, intron 1 of 1) protein_coding-intron (ENSMUSG00000057133.14, intron 17 of 36) 5334 ENSMUSG00000077795.1 ENSMUSG00000077795 ENSMUST00000104607 Gm25561 snoRNA Interval_117537 chr4 124497785 124498186 + 0 NA Intergenic Intergenic -46700 ENSMUSG00000084757.7 ENSMUSG00000084757 ENSMUST00000156566 1700057H15Rik lincRNA Interval_147059 chr7 60300890 60301108 + 0 NA Intergenic Intergenic 7795 ENSMUSG00000109220.1 ENSMUSG00000109220 ENSMUST00000208957 Gm30196 processed_pseudogene Interval_21794 chr11 4379878 4380443 + 0 NA intron (ENSMUSG00000020419.11, intron 10 of 10) protein_coding-intron (ENSMUSG00000020419.11, intron 11 of 11) 47102 ENSMUSG00000020419.11 ENSMUSG00000020419 ENSMUST00000124249 Hormad2 protein_coding Interval_150379 chr7 110030797 110031002 + 0 NA exon (ENSMUSG00000066232.4, exon 1 of 1) protein_coding-exon (ENSMUSG00000066232.4, exon 1 of 1) 7689 ENSMUSG00000064600.1 ENSMUSG00000064600 ENSMUST00000082666 Gm25636 snoRNA Interval_60728 chr15 76402631 76402843 + 0 NA TTS (ENSMUSG00000022558.16) protein_coding-TTS (ENSMUSG00000022558.16) 22184 ENSMUSG00000022558.16 ENSMUSG00000022558 ENSMUST00000161350 Mroh1 protein_coding Interval_40042 chr12 100765204 100765490 + 0 NA Intergenic Intergenic 3781 ENSMUSG00000064572.1 ENSMUSG00000064572 ENSMUST00000082638 Gm25801 snRNA Interval_91360 chr2 38211052 38211327 + 0 NA intron (ENSMUSG00000035392.17, intron 2 of 5) protein_coding-intron (ENSMUSG00000035392.17, intron 2 of 21) 13933 ENSMUSG00000105046.1 ENSMUSG00000105046 ENSMUST00000200061 Gm44455 miRNA Interval_126422 chr5 88394974 88395815 + 0 NA Intergenic Intergenic 19286 ENSMUSG00000029282.3 ENSMUSG00000029282 ENSMUST00000073363 Amtn protein_coding Interval_108889 chr3 133024356 133024632 + 0 NA intron (ENSMUSG00000028018.15, intron 5 of 9) protein_coding-intron (ENSMUSG00000028018.15, intron 5 of 11) -4929 ENSMUSG00000104787.1 ENSMUSG00000104787 ENSMUST00000197045 Gm19148 processed_pseudogene Interval_32937 chr11 113240787 113241720 + 0 NA Intergenic Intergenic -31584 ENSMUSG00000085421.1 ENSMUSG00000085421 ENSMUST00000130373 4732490B19Rik lincRNA Interval_13520 chr10 19062167 19062561 + 0 NA Intergenic Intergenic 24814 ENSMUSG00000110938.1 ENSMUSG00000110938 ENSMUST00000217047 1700124M09Rik lincRNA Interval_80558 chr18 44142224 44143049 + 0 NA Intergenic Intergenic 17249 ENSMUSG00000069385.10 ENSMUSG00000069385 ENSMUST00000091916 Gm10267 protein_coding Interval_70761 chr17 14214142 14214998 + 0 NA intron (ENSMUSG00000117185.1, intron 2 of 2) antisense-intron (ENSMUSG00000117185.1, intron 2 of 2) -10266 ENSMUSG00000048826.7 ENSMUSG00000048826 ENSMUST00000232816 Dact2 protein_coding Interval_111854 chr4 31986279 31988284 + 0 NA intron (ENSMUSG00000028284.13, intron 1 of 7) protein_coding-intron (ENSMUSG00000028284.13, intron 7 of 16) 1614 ENSMUSG00000028284.13 ENSMUSG00000028284 ENSMUST00000131310 Map3k7 protein_coding Interval_141734 chr6 134121640 134122375 + 0 NA intron (ENSMUSG00000030199.16, intron 2 of 8) protein_coding-intron (ENSMUSG00000030199.16, intron 1 of 7) 37406 ENSMUSG00000108238.1 ENSMUSG00000108238 ENSMUST00000204572 Gm43984 TEC Interval_62464 chr15 93215397 93216869 + 0 NA Intergenic Intergenic -18230 ENSMUSG00000065911.1 ENSMUSG00000065911 ENSMUST00000083977 Gm24447 misc_RNA Interval_153352 chr7 143835230 143835479 + 0 NA intron (ENSMUSG00000058454.15, intron 2 of 6) protein_coding-intron (ENSMUSG00000058454.15, intron 2 of 8) -1297 ENSMUSG00000058454.15 ENSMUSG00000058454 ENSMUST00000145471 Dhcr7 protein_coding Interval_143044 chr6 148873799 148874294 + 0 NA intron (ENSMUSG00000030309.16, intron 6 of 18) protein_coding-intron (ENSMUSG00000030309.16, intron 6 of 17) 22116 ENSMUSG00000030309.16 ENSMUSG00000030309 ENSMUST00000122909 Caprin2 protein_coding Interval_33753 chr11 118268458 118268876 + 0 NA exon (ENSMUSG00000033909.17, exon 14 of 21) protein_coding-exon (ENSMUSG00000033909.17, exon 14 of 21) 21405 ENSMUSG00000033909.17 ENSMUSG00000033909 ENSMUST00000151433 Usp36 protein_coding Interval_95196 chr2 104699995 104700271 + 0 NA intron (ENSMUSG00000027175.10, intron 1 of 6) protein_coding-intron (ENSMUSG00000027175.10, intron 2 of 9) 6334 ENSMUSG00000027175.10 ENSMUSG00000027175 ENSMUST00000132600 Tcp11l1 protein_coding Interval_6587 chr1 117732591 117732802 + 0 NA Intergenic Intergenic -8671 ENSMUSG00000100527.1 ENSMUSG00000100527 ENSMUST00000187470 Gm28359 unprocessed_pseudogene Interval_133989 chr6 17463267 17464716 + 0 NA promoter-TSS (ENSMUSG00000009376.15) protein_coding-promoter-TSS (ENSMUSG00000009376.15) 27685 ENSMUSG00000093902.1 ENSMUSG00000093902 ENSMUST00000179184 Gm25021 snRNA Interval_125575 chr5 72127567 72127799 + 0 NA intron (ENSMUSG00000029212.11, intron 8 of 8) protein_coding-intron (ENSMUSG00000029212.11, intron 8 of 8) 40481 ENSMUSG00000029213.11 ENSMUSG00000029213 ENSMUST00000196241 Commd8 protein_coding Interval_3362 chr1 57423599 57425019 + 0 NA Intergenic Intergenic -1936 ENSMUSG00000077776.1 ENSMUSG00000077776 ENSMUST00000104588 Gm22371 snoRNA Interval_81160 chr18 55188602 55188965 + 0 NA Intergenic Intergenic 8943 ENSMUSG00000088227.1 ENSMUSG00000088227 ENSMUST00000157602 Gm22597 snRNA Interval_6886 chr1 120368297 120368521 + 0 NA Intergenic Intergenic 27827 ENSMUSG00000036907.9 ENSMUSG00000036907 ENSMUST00000037286 C1ql2 protein_coding Interval_103760 chr3 52404907 52405097 + 0 NA Intergenic Intergenic -20406 ENSMUSG00000103454.1 ENSMUSG00000103454 ENSMUST00000194115 Gm38098 processed_pseudogene Interval_114497 chr4 81256166 81256528 + 0 NA Intergenic Intergenic 82057 ENSMUSG00000077607.1 ENSMUSG00000077607 ENSMUST00000104419 Gm25803 snoRNA Interval_141729 chr6 134076680 134077064 + 0 NA intron (ENSMUSG00000030199.16, intron 2 of 8) protein_coding-intron (ENSMUSG00000030199.16, intron 1 of 7) 3518 ENSMUSG00000108214.1 ENSMUSG00000108214 ENSMUST00000204995 Gm43982 TEC Interval_36774 chr12 53676422 53676651 + 0 NA intron (ENSMUSG00000021010.9, intron 3 of 10) protein_coding-intron (ENSMUSG00000021010.9, intron 4 of 11) -366690 ENSMUSG00000113179.1 ENSMUSG00000113179 ENSMUST00000221214 1700030L22Rik antisense Interval_43471 chr13 31642968 31643177 + 0 NA Intergenic Intergenic -16529 ENSMUSG00000098266.1 ENSMUSG00000098266 ENSMUST00000184237 Gm27516 miRNA Interval_146463 chr7 46096039 46096575 + 0 NA TTS (ENSMUSG00000096146.2) protein_coding-TTS (ENSMUSG00000096146.2) -3346 ENSMUSG00000109882.1 ENSMUSG00000109882 ENSMUST00000210053 Gm18706 processed_pseudogene Interval_114756 chr4 84772583 84773006 + 0 NA Intergenic Intergenic 31319 ENSMUSG00000086413.1 ENSMUSG00000086413 ENSMUST00000141637 Gm12415 lincRNA Interval_51754 chr14 31969905 31970592 + 0 NA Intergenic Intergenic 42754 ENSMUSG00000115120.1 ENSMUSG00000115120 ENSMUST00000226278 4930425P05Rik lincRNA Interval_127243 chr5 101833691 101834413 + 0 NA TTS (ENSMUSG00000043940.15) protein_coding-TTS (ENSMUSG00000043940.15) -3400 ENSMUSG00000092354.7 ENSMUSG00000092354 ENSMUST00000174312 Gm20548 antisense Interval_70363 chr17 9023219 9024796 + 0 NA Intergenic Intergenic 35665 ENSMUSG00000023873.13 ENSMUSG00000023873 ENSMUST00000136954 1700010I14Rik protein_coding Interval_166423 chr9 59369772 59370143 + 0 NA Intergenic Intergenic -42444 ENSMUSG00000025235.8 ENSMUSG00000025235 ENSMUST00000214225 Bbs4 protein_coding Interval_142342 chr6 140714784 140715353 + 0 NA Intergenic Intergenic -14216 ENSMUSG00000079264.1 ENSMUSG00000079264 ENSMUST00000111844 Gm11077 protein_coding Interval_62930 chr15 97989858 97990555 + 0 NA intron (ENSMUSG00000022483.17, intron 17 of 52) protein_coding-intron (ENSMUSG00000022483.17, intron 18 of 53) 14285 ENSMUSG00000022483.17 ENSMUSG00000022483 ENSMUST00000230148 Col2a1 protein_coding Interval_156974 chr8 63361273 63361631 + 0 NA Intergenic Intergenic -161468 ENSMUSG00000110300.1 ENSMUSG00000110300 ENSMUST00000209593 Gm18645 processed_pseudogene Interval_104941 chr3 79171533 79171791 + 0 NA exon (ENSMUSG00000062232.14, exon 3 of 3) protein_coding-exon (ENSMUSG00000062232.14, exon 3 of 3) -24712 ENSMUSG00000064693.1 ENSMUSG00000064693 ENSMUST00000082759 Gm24150 snRNA Interval_125796 chr5 74210879 74211706 + 0 NA intron (ENSMUSG00000062110.14, intron 7 of 7) protein_coding-intron (ENSMUSG00000062110.14, intron 8 of 8) 13401 ENSMUSG00000049907.8 ENSMUSG00000049907 ENSMUST00000201837 Rasl11b protein_coding Interval_96674 chr2 127061172 127061752 + 0 NA TTS (ENSMUSG00000001998.15) protein_coding-TTS (ENSMUSG00000001998.15) -9203 ENSMUSG00000001999.15 ENSMUSG00000001999 ENSMUST00000142737 Blvra protein_coding Interval_54982 chr14 76657507 76659863 + 0 NA Intergenic Intergenic -18969 ENSMUSG00000101009.6 ENSMUSG00000101009 ENSMUST00000191384 1700108F19Rik processed_transcript Interval_88295 chr2 3453100 3453321 + 0 NA exon (ENSMUSG00000026648.18, exon 14 of 14) protein_coding-exon (ENSMUSG00000026648.18, exon 14 of 14) 261 ENSMUSG00000026648.18 ENSMUSG00000026648 ENSMUST00000152468 Dclre1c protein_coding Interval_117221 chr4 120710667 120711328 + 0 NA intron (ENSMUSG00000028631.7, intron 9 of 13) protein_coding-intron (ENSMUSG00000028631.7, intron 9 of 13) 37615 ENSMUSG00000028631.7 ENSMUSG00000028631 ENSMUST00000129478 Kcnq4 protein_coding Interval_36509 chr12 47164056 47165275 + 0 NA promoter-TSS (ENSMUSG00000104308.1) TEC-promoter-TSS (ENSMUSG00000104308.1) -377 ENSMUSG00000104308.1 ENSMUSG00000104308 ENSMUST00000195244 Gm36971 TEC Interval_126480 chr5 88862086 88863247 + 0 NA Intergenic Intergenic -23267 ENSMUSG00000082389.2 ENSMUSG00000082389 ENSMUST00000122035 Mkrn1-ps1 processed_pseudogene Interval_62992 chr15 98527729 98528732 + 0 NA intron (ENSMUSG00000022992.17, intron 5 of 8) protein_coding-intron (ENSMUSG00000022992.17, intron 6 of 9) -1748 ENSMUSG00000065939.1 ENSMUSG00000065939 ENSMUST00000084005 Snora2b snoRNA Interval_150843 chr7 115500853 115502447 + 0 NA intron (ENSMUSG00000051910.13, intron 13 of 15) protein_coding-intron (ENSMUSG00000051910.13, intron 14 of 16) 329377 ENSMUSG00000099211.1 ENSMUSG00000099211 ENSMUST00000183778 Gm27684 miRNA Interval_42206 chr13 9897071 9897489 + 0 NA intron (ENSMUSG00000046159.16, intron 4 of 4) protein_coding-intron (ENSMUSG00000046159.16, intron 4 of 4) 4370 ENSMUSG00000113146.1 ENSMUSG00000113146 ENSMUST00000221304 Gm47406 processed_pseudogene Interval_100627 chr2 170566126 170566362 + 0 NA Intergenic Intergenic -9810 ENSMUSG00000085225.1 ENSMUSG00000085225 ENSMUST00000156516 Gm14637 antisense Interval_124452 chr5 48136556 48137032 + 0 NA intron (ENSMUSG00000031558.15, intron 3 of 8) protein_coding-intron (ENSMUSG00000031558.15, intron 4 of 35) 9710 ENSMUSG00000105502.1 ENSMUSG00000105502 ENSMUST00000197562 Gm42536 TEC Interval_63468 chr15 101246016 101246999 + 0 NA Intergenic Intergenic -21321 ENSMUSG00000097915.2 ENSMUSG00000097915 ENSMUST00000229239 A330009N23Rik antisense Interval_128414 chr5 113198982 113200005 + 0 NA intron (ENSMUSG00000051339.10, intron 1 of 12) protein_coding-intron (ENSMUSG00000051339.10, intron 1 of 12) -27416 ENSMUSG00000066964.2 ENSMUSG00000066964 ENSMUST00000086615 Tmem211 protein_coding Interval_90657 chr2 31733758 31734756 + 0 NA intron (ENSMUSG00000026842.16, intron 2 of 11) protein_coding-intron (ENSMUSG00000026842.16, intron 1 of 10) 45139 ENSMUSG00000118600.1 ENSMUSG00000118600 ENSMUST00000239231 AL929275.1 protein_coding Interval_171537 chr9 119082114 119084362 + 0 NA intron (ENSMUSG00000010660.3, intron 2 of 14) protein_coding-intron (ENSMUSG00000010660.3, intron 2 of 14) -8935 ENSMUSG00000010660.3 ENSMUSG00000010660 ENSMUST00000214491 Plcd1 protein_coding Interval_153897 chr8 10871235 10872109 + 0 NA exon (ENSMUSG00000109473.1, exon 6 of 6) lincRNA-exon (ENSMUSG00000109473.1, exon 6 of 6) -5486 ENSMUSG00000108961.1 ENSMUSG00000108961 ENSMUST00000207174 Gm32540 lincRNA Interval_126100 chr5 77381354 77382865 + 0 NA intron (ENSMUSG00000036256.13, intron 1 of 4) protein_coding-intron (ENSMUSG00000036256.13, intron 1 of 4) -4490 ENSMUSG00000106828.1 ENSMUSG00000106828 ENSMUST00000202460 Gm34648 antisense Interval_161040 chr8 117104399 117104613 + 0 NA intron (ENSMUSG00000031845.15, intron 2 of 11) protein_coding-intron (ENSMUSG00000031845.15, intron 2 of 10) 8508 ENSMUSG00000031845.15 ENSMUSG00000031845 ENSMUST00000176860 Bco1 protein_coding Interval_119615 chr4 138747868 138749121 + 0 NA Intergenic Intergenic 9132 ENSMUSG00000028749.7 ENSMUSG00000028749 ENSMUST00000030526 Pla2g2f protein_coding Interval_44145 chr13 41204807 41205372 + 0 NA intron (ENSMUSG00000021364.16, intron 1 of 7) protein_coding-intron (ENSMUSG00000021364.16, intron 1 of 7) 15073 ENSMUSG00000021364.16 ENSMUSG00000021364 ENSMUST00000117096 Elovl2 protein_coding Interval_73819 chr17 44114525 44115765 + 0 NA Intergenic Intergenic -9381 ENSMUSG00000023961.16 ENSMUSG00000023961 ENSMUST00000143137 Enpp4 protein_coding Interval_65244 chr16 20813906 20814588 + 0 NA Intergenic Intergenic -6134 ENSMUSG00000116721.1 ENSMUSG00000116721 ENSMUST00000231573 Gm9536 processed_pseudogene Interval_126221 chr5 82906246 82907535 + 0 NA Intergenic Intergenic 103125 ENSMUSG00000089162.1 ENSMUSG00000089162 ENSMUST00000158537 Gm24129 snRNA Interval_93350 chr2 72219855 72220364 + 0 NA intron (ENSMUSG00000049044.16, intron 8 of 21) protein_coding-intron (ENSMUSG00000049044.16, intron 14 of 27) 12193 ENSMUSG00000085001.1 ENSMUSG00000085001 ENSMUST00000128165 Rapgef4os2 antisense Interval_9378 chr1 156666785 156667428 + 0 NA promoter-TSS (ENSMUSG00000060519.11) protein_coding-promoter-TSS (ENSMUSG00000060519.11) 7229 ENSMUSG00000060519.11 ENSMUSG00000060519 ENSMUST00000190607 Tor3a protein_coding Interval_105475 chr3 86870978 86871172 + 0 NA intron (ENSMUSG00000028078.14, intron 2 of 15) protein_coding-intron (ENSMUSG00000028078.14, intron 2 of 15) 6583 ENSMUSG00000104074.1 ENSMUSG00000104074 ENSMUST00000195159 Gm37025 processed_pseudogene Interval_88221 chr19 60783915 60784112 + 0 NA intron (ENSMUSG00000024991.8, intron 1 of 10) protein_coding-intron (ENSMUSG00000024991.8, intron 1 of 21) -1823 ENSMUSG00000024991.8 ENSMUSG00000024991 ENSMUST00000236622 Eif3a protein_coding Interval_85955 chr19 34195722 34196174 + 0 NA intron (ENSMUSG00000024776.18, intron 1 of 4) protein_coding-intron (ENSMUSG00000024776.18, intron 1 of 10) 3719 ENSMUSG00000024776.18 ENSMUSG00000024776 ENSMUST00000130756 Stambpl1 protein_coding Interval_50525 chr14 14640846 14641103 + 0 NA Intergenic Intergenic -18134 ENSMUSG00000114628.1 ENSMUSG00000114628 ENSMUST00000226083 Gm19018 processed_pseudogene Interval_17576 chr10 77882294 77882810 + 0 NA intron (ENSMUSG00000069581.12, intron 8 of 9) protein_coding-intron (ENSMUSG00000069581.12, intron 10 of 11) -10876 ENSMUSG00000096573.2 ENSMUSG00000096573 ENSMUST00000185513 1700009J07Rik lincRNA Interval_131423 chr5 137088563 137089680 + 0 NA Intergenic Intergenic -16853 ENSMUSG00000037411.10 ENSMUSG00000037411 ENSMUST00000199832 Serpine1 protein_coding Interval_116714 chr4 116792225 116792987 + 0 NA intron (ENSMUSG00000033985.17, intron 2 of 5) protein_coding-intron (ENSMUSG00000033985.17, intron 5 of 10) 12586 ENSMUSG00000028688.13 ENSMUSG00000028688 ENSMUST00000146246 Toe1 protein_coding Interval_77275 chr17 87711252 87711657 + 0 NA intron (ENSMUSG00000024151.13, intron 10 of 15) protein_coding-intron (ENSMUSG00000024151.13, intron 10 of 15) 14913 ENSMUSG00000024151.13 ENSMUSG00000024151 ENSMUST00000174703 Msh2 protein_coding Interval_18303 chr10 84727531 84728511 + 0 NA TTS (ENSMUSG00000034453.8) protein_coding-TTS (ENSMUSG00000034453.8) -34217 ENSMUSG00000020037.15 ENSMUSG00000020037 ENSMUST00000095388 Rfx4 protein_coding Interval_121230 chr4 154236907 154237897 + 0 NA promoter-TSS (ENSMUSG00000057751.14) protein_coding-promoter-TSS (ENSMUSG00000057751.14) -11894 ENSMUSG00000057751.14 ENSMUSG00000057751 ENSMUST00000142110 Megf6 protein_coding Interval_17386 chr10 76260649 76260947 + 0 NA exon (ENSMUSG00000033208.7, exon 3 of 3) protein_coding-exon (ENSMUSG00000033208.7, exon 3 of 3) 6945 ENSMUSG00000033208.7 ENSMUSG00000033208 ENSMUST00000036387 S100b protein_coding Interval_101020 chr2 174286124 174286425 + 0 NA promoter-TSS (ENSMUSG00000086537.7) antisense-promoter-TSS (ENSMUSG00000086537.7) -334 ENSMUSG00000099106.1 ENSMUSG00000099106 ENSMUST00000184715 Gm27899 misc_RNA Interval_166747 chr9 62395141 62395991 + 0 NA Intergenic Intergenic 53102 ENSMUSG00000032249.14 ENSMUSG00000032249 ENSMUST00000145679 Anp32a protein_coding Interval_107041 chr3 103113941 103114352 + 0 NA intron (ENSMUSG00000007379.15, intron 1 of 17) protein_coding-intron (ENSMUSG00000007379.15, intron 1 of 11) 17400 ENSMUSG00000105731.1 ENSMUSG00000105731 ENSMUST00000198198 Gm43063 sense_intronic Interval_72388 chr17 29530724 29531982 + 0 NA intron (ENSMUSG00000079580.9, intron 2 of 2) protein_coding-intron (ENSMUSG00000079580.9, intron 2 of 2) 18285 ENSMUSG00000091614.2 ENSMUSG00000091614 ENSMUST00000168877 Gm17657 protein_coding Interval_48501 chr13 99486066 99486303 + 0 NA intron (ENSMUSG00000052727.6, intron 2 of 6) protein_coding-intron (ENSMUSG00000052727.6, intron 2 of 6) 18255 ENSMUSG00000114282.1 ENSMUSG00000114282 ENSMUST00000223710 5330431K02Rik TEC Interval_27319 chr11 66167031 66168676 + 0 NA promoter-TSS (ENSMUSG00000084967.1) processed_transcript-promoter-TSS (ENSMUSG00000084967.1) -182 ENSMUSG00000084967.1 ENSMUSG00000084967 ENSMUST00000144922 Gm12296 processed_transcript Interval_102883 chr3 32517545 32518388 + 0 NA promoter-TSS (ENSMUSG00000027667.13) protein_coding-promoter-TSS (ENSMUSG00000027667.13) -5622 ENSMUSG00000104231.1 ENSMUSG00000104231 ENSMUST00000192741 Gm37592 antisense Interval_121319 chr4 154960331 154961892 + 0 NA exon (ENSMUSG00000092483.1, exon 2 of 2) processed_transcript-exon (ENSMUSG00000092483.1, exon 2 of 2) 140 ENSMUSG00000048001.7 ENSMUSG00000048001 ENSMUST00000151480 Hes5 protein_coding Interval_16413 chr10 62785641 62786081 + 0 NA intron (ENSMUSG00000020074.7, intron 2 of 24) protein_coding-intron (ENSMUSG00000020074.7, intron 2 of 24) -2674 ENSMUSG00000112806.1 ENSMUSG00000112806 ENSMUST00000218355 Gm48146 TEC Interval_28953 chr11 79536741 79537280 + 0 NA exon (ENSMUSG00000020716.16, exon 38 of 58) protein_coding-exon (ENSMUSG00000020716.16, exon 38 of 58) -6401 ENSMUSG00000078771.10 ENSMUSG00000078771 ENSMUST00000133148 Evi2a protein_coding Interval_68753 chr16 85527957 85528501 + 0 NA intron (ENSMUSG00000041134.15, intron 2 of 3) protein_coding-intron (ENSMUSG00000041134.15, intron 2 of 3) 22188 ENSMUSG00000041134.15 ENSMUSG00000041134 ENSMUST00000162621 Cyyr1 protein_coding Interval_46171 chr13 62185364 62185833 + 0 NA intron (ENSMUSG00000074867.4, intron 1 of 3) protein_coding-intron (ENSMUSG00000074867.4, intron 1 of 4) 34428 ENSMUSG00000113690.1 ENSMUSG00000113690 ENSMUST00000221857 Gm36501 processed_pseudogene Interval_127392 chr5 103691723 103693985 + 0 NA intron (ENSMUSG00000029313.18, intron 1 of 6) protein_coding-intron (ENSMUSG00000029313.18, intron 1 of 6) 34617 ENSMUSG00000088121.1 ENSMUSG00000088121 ENSMUST00000157496 Gm25721 snRNA Interval_43973 chr13 38580058 38581084 + 0 NA Intergenic Intergenic 25706 ENSMUSG00000114866.1 ENSMUSG00000114866 ENSMUST00000225387 Gm40922 lincRNA Interval_60835 chr15 77047456 77047648 + 0 NA intron (ENSMUSG00000033576.12, intron 3 of 4) protein_coding-intron (ENSMUSG00000033576.12, intron 3 of 3) 2274 ENSMUSG00000033576.12 ENSMUSG00000033576 ENSMUST00000139304 Apol6 protein_coding Interval_72420 chr17 29716458 29717551 + 0 NA promoter-TSS (ENSMUSG00000024018.18) protein_coding-promoter-TSS (ENSMUSG00000024018.18) 4 ENSMUSG00000024018.18 ENSMUSG00000024018 ENSMUST00000174437 Ccdc167 protein_coding Interval_18807 chr10 91032486 91033055 + 0 NA intron (ENSMUSG00000019979.12, intron 16 of 26) protein_coding-intron (ENSMUSG00000019979.12, intron 16 of 26) 27029 ENSMUSG00000087966.1 ENSMUSG00000087966 ENSMUST00000157341 Gm25390 snRNA Interval_92237 chr2 57255083 57257042 + 0 NA intron (ENSMUSG00000026827.12, intron 1 of 5) protein_coding-intron (ENSMUSG00000026827.12, intron 1 of 16) -17554 ENSMUSG00000054181.11 ENSMUSG00000054181 ENSMUST00000146529 A930012O16Rik processed_transcript Interval_15180 chr10 43173174 43175499 + 0 NA promoter-TSS (ENSMUSG00000045008.2) bidirectional_promoter_lncRNA-promoter-TSS (ENSMUSG00000045008.2) 185 ENSMUSG00000038248.8 ENSMUSG00000038248 ENSMUST00000189987 Sobp protein_coding Interval_169333 chr9 96491734 96492256 + 0 NA intron (ENSMUSG00000099564.2, intron 10 of 10) protein_coding-intron (ENSMUSG00000099564.2, intron 10 of 10) 3218 ENSMUSG00000099049.1 ENSMUSG00000099049 ENSMUST00000183341 Gm27289 rRNA Interval_150222 chr7 108370458 108371007 + 0 NA Intergenic Intergenic 3242 ENSMUSG00000109631.1 ENSMUSG00000109631 ENSMUST00000210291 Olfr494 protein_coding Interval_59745 chr15 59007060 59007276 + 0 NA intron (ENSMUSG00000022353.10, intron 3 of 14) protein_coding-intron (ENSMUSG00000022353.10, intron 3 of 14) 23032 ENSMUSG00000115062.1 ENSMUSG00000115062 ENSMUST00000226216 4930544F09Rik antisense Interval_15105 chr10 42613964 42615930 + 0 NA intron (ENSMUSG00000038280.12, intron 2 of 6) protein_coding-intron (ENSMUSG00000038280.12, intron 2 of 5) -34173 ENSMUSG00000019803.11 ENSMUSG00000019803 ENSMUST00000143891 Nr2e1 protein_coding Interval_138654 chr6 90797332 90798195 + 0 NA intron (ENSMUSG00000034312.15, intron 2 of 15) protein_coding-intron (ENSMUSG00000034312.15, intron 1 of 13) -3288 ENSMUSG00000107795.1 ENSMUSG00000107795 ENSMUST00000204401 Gm44105 sense_intronic Interval_156756 chr8 57941897 57942202 + 0 NA intron (ENSMUSG00000096914.3, intron 7 of 12) protein_coding-intron (ENSMUSG00000096914.3, intron 2 of 7) 50306 ENSMUSG00000109753.1 ENSMUSG00000109753 ENSMUST00000210669 Gm45633 TEC Interval_81685 chr18 63448967 63450102 + 0 NA Intergenic Intergenic 32280 ENSMUSG00000097980.2 ENSMUSG00000097980 ENSMUST00000237281 Gm26972 lincRNA Interval_93579 chr2 74642428 74642641 + 0 NA Intergenic Intergenic 10694 ENSMUSG00000082973.1 ENSMUSG00000082973 ENSMUST00000117554 Gm13672 processed_pseudogene Interval_79628 chr18 34078754 34081127 + 0 NA Intergenic Intergenic -13505 ENSMUSG00000077263.1 ENSMUSG00000077263 ENSMUST00000104075 Gm24432 snoRNA Interval_4360 chr1 73004656 73005047 + 0 NA intron (ENSMUSG00000101968.6, intron 1 of 2) antisense-intron (ENSMUSG00000101968.6, intron 1 of 2) 11058 ENSMUSG00000026182.6 ENSMUSG00000026182 ENSMUST00000027374 Tnp1 protein_coding Interval_122477 chr5 23353586 23353807 + 0 NA Intergenic Intergenic -6422 ENSMUSG00000105254.1 ENSMUSG00000105254 ENSMUST00000199688 Gm42951 lincRNA Interval_55016 chr14 76972847 76973154 + 0 NA Intergenic Intergenic -3249 ENSMUSG00000115303.1 ENSMUSG00000115303 ENSMUST00000227717 Gm4291 processed_pseudogene Interval_20619 chr10 119615255 119615721 + 0 NA intron (ENSMUSG00000112555.1, intron 1 of 1) protein_coding-intron (ENSMUSG00000034813.18, intron 1 of 22) 2232 ENSMUSG00000112555.1 ENSMUSG00000112555 ENSMUST00000218599 Gm47027 antisense Interval_65276 chr16 21184200 21185572 + 0 NA Intergenic Intergenic -25638 ENSMUSG00000005958.15 ENSMUSG00000005958 ENSMUST00000160053 Ephb3 protein_coding Interval_4782 chr1 78600800 78602741 + 0 NA intron (ENSMUSG00000099364.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000099364.1, intron 1 of 1) 7738 ENSMUSG00000099364.1 ENSMUSG00000099364 ENSMUST00000190504 5730419F03Rik lincRNA Interval_5645 chr1 90509135 90509518 + 0 NA Intergenic Intergenic -11170 ENSMUSG00000103292.1 ENSMUSG00000103292 ENSMUST00000192105 Gm35048 TEC Interval_113946 chr4 61692440 61692710 + 0 NA Intergenic Intergenic -6266 ENSMUSG00000083304.1 ENSMUSG00000083304 ENSMUST00000121741 Mup-ps15 unprocessed_pseudogene Interval_19745 chr10 108433775 108434424 + 0 NA intron (ENSMUSG00000112532.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000112532.1, intron 1 of 2) 6032 ENSMUSG00000093762.1 ENSMUSG00000093762 ENSMUST00000177317 Gm25591 miRNA Interval_111064 chr4 11586449 11586665 + 0 NA TTS (ENSMUSG00000078773.11) protein_coding-TTS (ENSMUSG00000078773.11) 6892 ENSMUSG00000094595.1 ENSMUSG00000094595 ENSMUST00000180239 Fsbp protein_coding Interval_39076 chr12 84884516 84885212 + 0 NA intron (ENSMUSG00000113079.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000113079.1, intron 1 of 1) 3040 ENSMUSG00000113079.1 ENSMUSG00000113079 ENSMUST00000221790 Gm48709 lincRNA Interval_73832 chr17 44256738 44257146 + 0 NA intron (ENSMUSG00000023959.10, intron 4 of 5) protein_coding-intron (ENSMUSG00000023959.10, intron 4 of 5) 110961 ENSMUSG00000117106.1 ENSMUSG00000117106 ENSMUST00000233110 Gm49872 lincRNA Interval_129685 chr5 121731892 121732556 + 0 NA intron (ENSMUSG00000042605.16, intron 1 of 5) protein_coding-intron (ENSMUSG00000042605.16, intron 1 of 24) -4821 ENSMUSG00000089729.1 ENSMUSG00000089729 ENSMUST00000162348 Gm16552 antisense Interval_171738 chr9 120619422 120620369 + 0 NA intron (ENSMUSG00000110760.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000110760.1, intron 1 of 2) -5147 ENSMUSG00000110760.1 ENSMUSG00000110760 ENSMUST00000216606 Gm39456 lincRNA Interval_11547 chr1 182622759 182623176 + 0 NA intron (ENSMUSG00000038599.14, intron 15 of 20) protein_coding-intron (ENSMUSG00000038599.14, intron 15 of 20) -56972 ENSMUSG00000104376.1 ENSMUSG00000104376 ENSMUST00000192593 Gm37516 TEC Interval_86152 chr19 37098627 37099423 + 0 NA intron (ENSMUSG00000039652.16, intron 3 of 8) protein_coding-intron (ENSMUSG00000039652.16, intron 5 of 10) 50137 ENSMUSG00000080544.1 ENSMUSG00000080544 ENSMUST00000116894 Gm22714 ribozyme Interval_20535 chr10 118643889 118644170 + 0 NA Intergenic Intergenic 71697 ENSMUSG00000112029.1 ENSMUSG00000112029 ENSMUST00000219594 Gm33337 lincRNA Interval_160958 chr8 116371490 116373409 + 0 NA Intergenic Intergenic 15388 ENSMUSG00000110709.1 ENSMUSG00000110709 ENSMUST00000212522 1700018P08Rik lincRNA Interval_151636 chr7 125571633 125571843 + 0 NA intron (ENSMUSG00000030748.9, intron 7 of 10) protein_coding-intron (ENSMUSG00000030748.9, intron 7 of 10) 379 ENSMUSG00000108524.1 ENSMUSG00000108524 ENSMUST00000205394 Gm44876 antisense Interval_28445 chr11 75932086 75932779 + 0 NA intron (ENSMUSG00000020847.15, intron 1 of 5) protein_coding-intron (ENSMUSG00000020847.15, intron 1 of 5) 5997 ENSMUSG00000020847.15 ENSMUSG00000020847 ENSMUST00000152035 Rph3al protein_coding Interval_116625 chr4 116149951 116151140 + 0 NA promoter-TSS (ENSMUSG00000028700.14) protein_coding-promoter-TSS (ENSMUSG00000028700.14) 793 ENSMUSG00000028701.4 ENSMUSG00000028701 ENSMUST00000135982 Lurap1 protein_coding Interval_154684 chr8 22583713 22584028 + 0 NA exon (ENSMUSG00000008892.12, exon 1 of 1) protein_coding-exon (ENSMUSG00000008892.12, exon 1 of 1) 2251 ENSMUSG00000008892.12 ENSMUSG00000008892 ENSMUST00000211222 Vdac3 protein_coding Interval_61591 chr15 82835002 82835676 + 0 NA intron (ENSMUSG00000041852.15, intron 2 of 5) protein_coding-intron (ENSMUSG00000041852.15, intron 2 of 4) -31375 ENSMUSG00000116280.1 ENSMUSG00000116280 ENSMUST00000229945 Gm49435 unprocessed_pseudogene Interval_55954 chr14 103131841 103132655 + 0 NA intron (ENSMUSG00000033004.16, intron 73 of 84) protein_coding-intron (ENSMUSG00000033004.16, intron 73 of 84) -32742 ENSMUSG00000022124.15 ENSMUSG00000022124 ENSMUST00000123043 Fbxl3 protein_coding Interval_24239 chr11 31730824 31731479 + 0 NA Intergenic Intergenic 32503 ENSMUSG00000103635.1 ENSMUSG00000103635 ENSMUST00000192490 Gm38061 TEC Interval_84211 chr19 8791862 8792105 + 0 NA Intergenic Intergenic -1519 ENSMUSG00000118305.1 ENSMUSG00000118305 ENSMUST00000237376 Gm50131 processed_pseudogene Interval_55787 chr14 100125783 100126320 + 0 NA intron (ENSMUSG00000072294.5, intron 2 of 7) protein_coding-intron (ENSMUSG00000072294.5, intron 1 of 6) -87138 ENSMUSG00000054391.12 ENSMUSG00000054391 ENSMUST00000145018 4930517O19Rik antisense Interval_168178 chr9 77778711 77779412 + 0 NA intron (ENSMUSG00000032350.9, intron 3 of 3) protein_coding-intron (ENSMUSG00000032350.9, intron 3 of 15) 12919 ENSMUSG00000032350.9 ENSMUSG00000032350 ENSMUST00000216848 Gclc protein_coding Interval_104084 chr3 58485440 58485626 + 0 NA Intergenic Intergenic 40359 ENSMUSG00000027808.8 ENSMUSG00000027808 ENSMUST00000029385 Serp1 protein_coding Interval_145513 chr7 35314132 35314701 + 0 NA intron (ENSMUSG00000063808.14, intron 1 of 4) protein_coding-intron (ENSMUSG00000063808.14, intron 1 of 19) -29097 ENSMUSG00000063808.14 ENSMUSG00000063808 ENSMUST00000153778 Gpatch1 protein_coding Interval_18561 chr10 87691602 87692214 + 0 NA Intergenic Intergenic 3330 ENSMUSG00000112536.1 ENSMUSG00000112536 ENSMUST00000218613 Gm48195 processed_pseudogene Interval_93878 chr2 77891679 77892034 + 0 NA intron (ENSMUSG00000027014.14, intron 19 of 19) protein_coding-intron (ENSMUSG00000027014.14, intron 19 of 19) -10389 ENSMUSG00000087353.1 ENSMUSG00000087353 ENSMUST00000154480 Gm13727 processed_transcript Interval_112538 chr4 42976569 42977345 + 0 NA intron (ENSMUSG00000028451.12, intron 1 of 2) protein_coding-intron (ENSMUSG00000028451.12, intron 1 of 2) 7023 ENSMUSG00000028451.12 ENSMUSG00000028451 ENSMUST00000139127 1700022I11Rik protein_coding Interval_153296 chr7 143437305 143438724 + 0 NA Intergenic Intergenic -9591 ENSMUSG00000099103.1 ENSMUSG00000099103 ENSMUST00000184559 Gm27901 misc_RNA Interval_145012 chr7 29416955 29418111 + 0 NA intron (ENSMUSG00000030583.16, intron 3 of 22) protein_coding-intron (ENSMUSG00000030583.16, intron 3 of 22) -39928 ENSMUSG00000030583.16 ENSMUSG00000030583 ENSMUST00000183085 Sipa1l3 protein_coding Interval_58061 chr15 27551996 27552548 + 0 NA intron (ENSMUSG00000022265.7, intron 2 of 11) protein_coding-intron (ENSMUSG00000022265.7, intron 2 of 11) -19175 ENSMUSG00000022265.7 ENSMUSG00000022265 ENSMUST00000134004 Ank protein_coding Interval_142550 chr6 143207287 143207572 + 0 NA exon (ENSMUSG00000030275.6, exon 8 of 8) protein_coding-exon (ENSMUSG00000030275.6, exon 8 of 8) 14019 ENSMUSG00000107802.1 ENSMUSG00000107802 ENSMUST00000204351 1700126G02Rik antisense Interval_64103 chr16 8379516 8381146 + 0 NA Intergenic Intergenic -22483 ENSMUSG00000077152.1 ENSMUSG00000077152 ENSMUST00000103964 Gm24579 snoRNA Interval_113798 chr4 58713938 58714979 + 0 NA Intergenic Intergenic -55866 ENSMUSG00000086470.1 ENSMUSG00000086470 ENSMUST00000127456 Gm12580 lincRNA Interval_91123 chr2 35270417 35270941 + 0 NA intron (ENSMUSG00000026879.14, intron 2 of 17) protein_coding-intron (ENSMUSG00000026879.14, intron 2 of 5) -9711 ENSMUSG00000106961.1 ENSMUSG00000106961 ENSMUST00000202212 Gm43128 TEC Interval_127483 chr5 104381317 104382207 + 0 NA Intergenic Intergenic -53359 ENSMUSG00000105954.1 ENSMUSG00000105954 ENSMUST00000199139 Gm42793 TEC Interval_15782 chr10 56453071 56454130 + 0 NA intron (ENSMUSG00000112833.1, intron 4 of 5) lincRNA-intron (ENSMUSG00000112833.1, intron 4 of 5) -15997 ENSMUSG00000112175.1 ENSMUSG00000112175 ENSMUST00000220158 4930452L12Rik lincRNA Interval_165049 chr9 44134220 44135542 + 0 NA promoter-TSS (ENSMUSG00000097617.2) antisense-promoter-TSS (ENSMUSG00000097617.2) 220 ENSMUSG00000032135.15 ENSMUSG00000032135 ENSMUST00000132490 Mcam protein_coding Interval_90265 chr2 29415229 29415605 + 0 NA intron (ENSMUSG00000026799.15, intron 3 of 4) protein_coding-intron (ENSMUSG00000026799.15, intron 3 of 7) -18958 ENSMUSG00000086994.1 ENSMUSG00000086994 ENSMUST00000153600 Gm13402 antisense Interval_162544 chr9 4082538 4083458 + 0 NA Intergenic Intergenic -130924 ENSMUSG00000110691.1 ENSMUSG00000110691 ENSMUST00000211927 Gm5363 processed_pseudogene Interval_78797 chr18 20690094 20690660 + 0 NA intron (ENSMUSG00000056124.5, intron 6 of 8) protein_coding-intron (ENSMUSG00000056124.5, intron 6 of 8) -7414 ENSMUSG00000091449.3 ENSMUSG00000091449 ENSMUST00000165229 Gm10269 processed_pseudogene Interval_27941 chr11 71199449 71199980 + 0 NA intron (ENSMUSG00000070390.12, intron 1 of 13) protein_coding-intron (ENSMUSG00000070390.12, intron 2 of 12) 31019 ENSMUSG00000070390.12 ENSMUSG00000070390 ENSMUST00000094046 Nlrp1b protein_coding Interval_118771 chr4 133621770 133622581 + 0 NA intron (ENSMUSG00000037553.14, intron 2 of 7) protein_coding-intron (ENSMUSG00000037553.14, intron 2 of 7) 16508 ENSMUSG00000083885.1 ENSMUSG00000083885 ENSMUST00000119668 Gm13213 processed_pseudogene Interval_77060 chr17 86135912 86137419 + 0 NA intron (ENSMUSG00000024135.10, intron 3 of 20) protein_coding-intron (ENSMUSG00000024135.10, intron 3 of 20) -38910 ENSMUSG00000117546.1 ENSMUSG00000117546 ENSMUST00000234087 AC154542.1 TEC Interval_23235 chr11 20752534 20753327 + 0 NA Intergenic Intergenic -11475 ENSMUSG00000049659.15 ENSMUSG00000049659 ENSMUST00000134897 Aftph protein_coding Interval_139006 chr6 94176368 94178073 + 0 NA intron (ENSMUSG00000045095.16, intron 2 of 2) protein_coding-intron (ENSMUSG00000045095.16, intron 1 of 21) 146814 ENSMUSG00000107545.1 ENSMUSG00000107545 ENSMUST00000204466 Gm44307 processed_pseudogene Interval_6165 chr1 98475896 98476713 + 0 NA intron (ENSMUSG00000026336.13, intron 8 of 14) protein_coding-intron (ENSMUSG00000026336.13, intron 7 of 13) 18536 ENSMUSG00000089791.1 ENSMUSG00000089791 ENSMUST00000160287 Gm3555 processed_pseudogene Interval_88289 chr2 3414225 3414492 + 0 NA intron (ENSMUSG00000026650.15, intron 1 of 3) protein_coding-intron (ENSMUSG00000026650.15, intron 1 of 2) 8236 ENSMUSG00000026650.15 ENSMUSG00000026650 ENSMUST00000144584 Meig1 protein_coding Interval_24414 chr11 33097818 33098775 + 0 NA Intergenic Intergenic 29745 ENSMUSG00000087318.1 ENSMUSG00000087318 ENSMUST00000147896 Gm12114 lincRNA Interval_60330 chr15 72954979 72955225 + 0 NA intron (ENSMUSG00000047921.17, intron 9 of 16) protein_coding-intron (ENSMUSG00000047921.17, intron 9 of 21) 41745 ENSMUSG00000096173.2 ENSMUSG00000096173 ENSMUST00000166418 Gm3150 processed_pseudogene Interval_17103 chr10 71364314 71364577 + 0 NA TTS (ENSMUSG00000060733.13) protein_coding-TTS (ENSMUSG00000060733.13) 16609 ENSMUSG00000060733.13 ENSMUSG00000060733 ENSMUST00000145521 Ipmk protein_coding Interval_112593 chr4 43453358 43454339 + 0 NA intron (ENSMUSG00000028459.11, intron 2 of 3) protein_coding-intron (ENSMUSG00000028459.11, intron 2 of 8) 475 ENSMUSG00000028459.11 ENSMUSG00000028459 ENSMUST00000141198 Cd72 protein_coding Interval_45628 chr13 56353190 56353445 + 0 NA Intergenic Intergenic -9583 ENSMUSG00000074885.4 ENSMUSG00000074885 ENSMUST00000099476 Gm10782 lincRNA Interval_145121 chr7 30169341 30170732 + 0 NA promoter-TSS (ENSMUSG00000037029.8) protein_coding-promoter-TSS (ENSMUSG00000037029.8) -286 ENSMUSG00000037029.8 ENSMUSG00000037029 ENSMUST00000208923 Zfp146 protein_coding Interval_169277 chr9 96087827 96089117 + 0 NA Intergenic Intergenic -47799 ENSMUSG00000100931.1 ENSMUSG00000100931 ENSMUST00000189281 Gm28085 antisense Interval_134305 chr6 24721499 24721904 + 0 NA Intergenic Intergenic -11544 ENSMUSG00000029679.7 ENSMUSG00000029679 ENSMUST00000031690 Hyal6 protein_coding Interval_58905 chr15 39878814 39879355 + 0 NA intron (ENSMUSG00000022305.13, intron 2 of 2) protein_coding-intron (ENSMUSG00000022305.13, intron 4 of 6) 64606 ENSMUSG00000022305.13 ENSMUSG00000022305 ENSMUST00000146714 Lrp12 protein_coding Interval_17407 chr10 76409467 76410106 + 0 NA intron (ENSMUSG00000001151.10, intron 4 of 29) protein_coding-intron (ENSMUSG00000001151.10, intron 16 of 41) 7126 ENSMUSG00000001151.10 ENSMUSG00000001151 ENSMUST00000219701 Pcnt protein_coding Interval_137498 chr6 72765113 72765426 + 0 NA intron (ENSMUSG00000055799.13, intron 2 of 5) protein_coding-intron (ENSMUSG00000055799.13, intron 3 of 11) -13355 ENSMUSG00000104501.1 ENSMUSG00000104501 ENSMUST00000193564 Gm37736 TEC Interval_24870 chr11 40660710 40661413 + 0 NA Intergenic Intergenic 12795 ENSMUSG00000082087.4 ENSMUSG00000082087 ENSMUST00000122180 Gm12138 processed_pseudogene Interval_80367 chr18 40208807 40209221 + 0 NA intron (ENSMUSG00000024487.5, intron 4 of 5) protein_coding-intron (ENSMUSG00000024487.5, intron 4 of 5) 10329 ENSMUSG00000024487.5 ENSMUSG00000024487 ENSMUST00000237176 Yipf5 protein_coding Interval_75102 chr17 63429585 63430820 + 0 NA intron (ENSMUSG00000023965.13, intron 1 of 6) protein_coding-intron (ENSMUSG00000023965.13, intron 4 of 8) 21509 ENSMUSG00000023965.13 ENSMUSG00000023965 ENSMUST00000090318 Fbxl17 protein_coding Interval_108668 chr3 129935994 129936551 + 0 NA intron (ENSMUSG00000027994.14, intron 1 of 6) protein_coding-intron (ENSMUSG00000027994.14, intron 1 of 7) 33804 ENSMUSG00000027994.14 ENSMUSG00000027994 ENSMUST00000122961 Mcub protein_coding Interval_59420 chr15 52873703 52874240 + 0 NA Intergenic Intergenic -87704 ENSMUSG00000115137.1 ENSMUSG00000115137 ENSMUST00000228167 Gm34794 lincRNA Interval_158238 chr8 80340441 80340792 + 0 NA Intergenic Intergenic 145417 ENSMUSG00000110294.1 ENSMUSG00000110294 ENSMUST00000211276 Gm45430 lincRNA Interval_148641 chr7 83738590 83739305 + 0 NA intron (ENSMUSG00000001741.12, intron 1 of 12) protein_coding-intron (ENSMUSG00000001741.12, intron 1 of 12) 990 ENSMUSG00000001741.12 ENSMUSG00000001741 ENSMUST00000156553 Il16 protein_coding Interval_157439 chr8 70382582 70383708 + 0 NA exon (ENSMUSG00000003575.13, exon 14 of 14) protein_coding-exon (ENSMUSG00000003575.13, exon 14 of 14) 9274 ENSMUSG00000031849.9 ENSMUSG00000031849 ENSMUST00000212488 Comp protein_coding Interval_114203 chr4 67206429 67206727 + 0 NA Intergenic Intergenic 41099 ENSMUSG00000081435.1 ENSMUSG00000081435 ENSMUST00000122195 Gm11403 processed_pseudogene Interval_1910 chr1 34485297 34486212 + 0 NA promoter-TSS (ENSMUSG00000101223.6) lincRNA-promoter-TSS (ENSMUSG00000101223.6) -143 ENSMUSG00000101223.6 ENSMUSG00000101223 ENSMUST00000186117 4930568A12Rik lincRNA Interval_92088 chr2 53121905 53123173 + 0 NA exon (ENSMUSG00000036053.17, exon 22 of 27) protein_coding-exon (ENSMUSG00000036053.17, exon 22 of 27) 68648 ENSMUSG00000061136.16 ENSMUSG00000061136 ENSMUST00000132031 Prpf40a protein_coding Interval_47822 chr13 93544507 93544713 + 0 NA Intergenic Intergenic -44873 ENSMUSG00000021690.10 ENSMUSG00000021690 ENSMUST00000220513 Jmy protein_coding Interval_111502 chr4 22249834 22250895 + 0 NA Intergenic Intergenic -25469 ENSMUSG00000083376.1 ENSMUSG00000083376 ENSMUST00000121463 Gm11882 processed_pseudogene Interval_74194 chr17 47053446 47055402 + 0 NA Intergenic Intergenic -11385 ENSMUSG00000062472.6 ENSMUSG00000062472 ENSMUST00000075152 Gm4945 processed_pseudogene Interval_113689 chr4 57656639 57657119 + 0 NA intron (ENSMUSG00000089945.13, intron 2 of 8) protein_coding-intron (ENSMUSG00000089945.13, intron 3 of 10) 19056 ENSMUSG00000089945.13 ENSMUSG00000089945 ENSMUST00000150412 Pakap protein_coding Interval_36230 chr12 40015953 40017405 + 0 NA intron (ENSMUSG00000047446.18, intron 2 of 7) protein_coding-intron (ENSMUSG00000047446.18, intron 2 of 4) 20750 ENSMUSG00000047446.18 ENSMUSG00000047446 ENSMUST00000101472 Arl4a protein_coding Interval_40285 chr12 103165107 103165532 + 0 NA intron (ENSMUSG00000021198.16, intron 45 of 51) protein_coding-intron (ENSMUSG00000021198.16, intron 40 of 46) 37130 ENSMUSG00000098628.1 ENSMUSG00000098628 ENSMUST00000183635 Gm27976 misc_RNA Interval_144257 chr7 24076778 24077013 + 0 NA intron (ENSMUSG00000108960.1, intron 2 of 3) unprocessed_pseudogene-intron (ENSMUSG00000108960.1, intron 2 of 3) 2980 ENSMUSG00000108960.1 ENSMUSG00000108960 ENSMUST00000207254 Gm44943 unprocessed_pseudogene Interval_59105 chr15 43955379 43955624 + 0 NA Intergenic Intergenic -85465 ENSMUSG00000054409.5 ENSMUSG00000054409 ENSMUST00000067469 Tmem74 protein_coding Interval_30513 chr11 94866344 94866955 + 0 NA Intergenic Intergenic -4890 ENSMUSG00000043522.8 ENSMUSG00000043522 ENSMUST00000124176 A430060F13Rik unprocessed_pseudogene Interval_165970 chr9 55079530 55081010 + 0 NA Intergenic Intergenic -12807 ENSMUSG00000111157.1 ENSMUSG00000111157 ENSMUST00000216217 Gm47887 lincRNA Interval_119988 chr4 141257268 141257584 + 0 NA exon (ENSMUSG00000028919.11, exon 17 of 17) protein_coding-exon (ENSMUSG00000028919.11, exon 17 of 17) 8590 ENSMUSG00000085774.1 ENSMUSG00000085774 ENSMUST00000127875 Gm13055 antisense Interval_61913 chr15 85165574 85166879 + 0 NA Intergenic Intergenic -10094 ENSMUSG00000115924.1 ENSMUSG00000115924 ENSMUST00000229478 Gm19277 lincRNA Interval_73772 chr17 43492921 43493780 + 0 NA intron (ENSMUSG00000023914.16, intron 6 of 13) protein_coding-intron (ENSMUSG00000023914.16, intron 6 of 13) 9383 ENSMUSG00000023914.16 ENSMUSG00000023914 ENSMUST00000152155 Mep1a protein_coding Interval_133668 chr6 8280275 8280700 + 0 NA TTS (ENSMUSG00000089862.8) protein_coding-TTS (ENSMUSG00000089862.8) 21037 ENSMUSG00000107705.1 ENSMUSG00000107705 ENSMUST00000162564 Gm45062 protein_coding Interval_170303 chr9 106800127 106800400 + 0 NA Intergenic Intergenic -11087 ENSMUSG00000040661.6 ENSMUSG00000040661 ENSMUST00000191300 Rad54l2 protein_coding Interval_23728 chr11 25437136 25438004 + 0 NA Intergenic Intergenic 136307 ENSMUSG00000086439.1 ENSMUSG00000086439 ENSMUST00000145127 Gm12069 lincRNA Interval_172525 chrX 25752585 25753450 + 0 NA Intergenic Intergenic -73497 ENSMUSG00000098849.1 ENSMUSG00000098849 ENSMUST00000185017 Gm27892 miRNA Interval_107841 chr3 116059975 116060212 + 0 NA Intergenic Intergenic 5826 ENSMUSG00000077741.1 ENSMUSG00000077741 ENSMUST00000104553 Gm26344 snoRNA Interval_64655 chr16 13940247 13941403 + 0 NA promoter-TSS (ENSMUSG00000022679.13) protein_coding-intron (ENSMUSG00000022679.13, intron 1 of 3) -269 ENSMUSG00000022679.13 ENSMUSG00000022679 ENSMUST00000156143 Mpv17l protein_coding Interval_131154 chr5 135463686 135464101 + 0 NA intron (ENSMUSG00000039959.13, intron 1 of 1) protein_coding-intron (ENSMUSG00000039959.13, intron 1 of 30) 2034 ENSMUSG00000039959.13 ENSMUSG00000039959 ENSMUST00000202044 Hip1 protein_coding Interval_69407 chr16 92929302 92929612 + 0 NA Intergenic Intergenic 67580 ENSMUSG00000116805.1 ENSMUSG00000116805 ENSMUST00000231501 Gm49723 lincRNA Interval_111535 chr4 22641375 22641763 + 0 NA Intergenic Intergenic -62488 ENSMUSG00000080762.1 ENSMUSG00000080762 ENSMUST00000121885 Gm11879 processed_pseudogene Interval_164059 chr9 31225829 31227993 + 0 NA Intergenic Intergenic -47910 ENSMUSG00000091003.2 ENSMUSG00000091003 ENSMUST00000164658 Gm7244 processed_pseudogene Interval_158514 chr8 84189736 84189982 + 0 NA Intergenic Intergenic -4642 ENSMUSG00000056155.6 ENSMUSG00000056155 ENSMUST00000210202 Nanos3 protein_coding Interval_54678 chr14 73219352 73220112 + 0 NA intron (ENSMUSG00000022105.6, intron 17 of 26) protein_coding-intron (ENSMUSG00000022105.6, intron 17 of 26) -12881 ENSMUSG00000076121.1 ENSMUSG00000076121 ENSMUST00000102166 Mir687 miRNA Interval_55576 chr14 93193599 93195505 + 0 NA TTS (ENSMUSG00000115505.1) processed_pseudogene-TTS (ENSMUSG00000115505.1) 1144 ENSMUSG00000115505.1 ENSMUSG00000115505 ENSMUST00000228021 Gm9247 processed_pseudogene Interval_153135 chr7 141577144 141578188 + 0 NA intron (ENSMUSG00000002957.11, intron 1 of 3) protein_coding-intron (ENSMUSG00000002957.11, intron 1 of 21) 15458 ENSMUSG00000002957.11 ENSMUSG00000002957 ENSMUST00000201261 Ap2a2 protein_coding Interval_5471 chr1 89092028 89092974 + 0 NA intron (ENSMUSG00000036206.12, intron 1 of 2) protein_coding-intron (ENSMUSG00000036206.12, intron 1 of 5) -4572 ENSMUSG00000102700.1 ENSMUSG00000102700 ENSMUST00000195426 Gm38312 TEC Interval_7758 chr1 133475909 133476238 + 0 NA Intergenic Intergenic -51696 ENSMUSG00000070643.11 ENSMUSG00000070643 ENSMUST00000126530 Sox13 protein_coding Interval_24541 chr11 34212809 34213359 + 0 NA Intergenic Intergenic -4995 ENSMUSG00000047861.2 ENSMUSG00000047861 ENSMUST00000060271 Foxi1 protein_coding Interval_47433 chr13 84132511 84132854 + 0 NA Intergenic Intergenic -33771 ENSMUSG00000114335.1 ENSMUSG00000114335 ENSMUST00000224872 Gm8456 processed_pseudogene Interval_102928 chr3 32871326 32871708 + 0 NA intron (ENSMUSG00000056900.13, intron 6 of 14) protein_coding-intron (ENSMUSG00000056900.13, intron 6 of 20) 9091 ENSMUSG00000081883.2 ENSMUSG00000081883 ENSMUST00000119937 Gm15574 processed_pseudogene Interval_12949 chr10 8583765 8584179 + 0 NA Intergenic Intergenic -58962 ENSMUSG00000077582.1 ENSMUSG00000077582 ENSMUST00000104394 Gm24374 snRNA Interval_50143 chr14 8262408 8262653 + 0 NA Intergenic Intergenic -4376 ENSMUSG00000021751.13 ENSMUSG00000021751 ENSMUST00000171175 Acox2 protein_coding Interval_127600 chr5 105706706 105707688 + 0 NA intron (ENSMUSG00000046079.16, intron 1 of 1) protein_coding-intron (ENSMUSG00000046079.16, intron 1 of 2) -24192 ENSMUSG00000046079.16 ENSMUSG00000046079 ENSMUST00000134605 Lrrc8d protein_coding Interval_19368 chr10 98166418 98167041 + 0 NA Intergenic Intergenic -134290 ENSMUSG00000112457.1 ENSMUSG00000112457 ENSMUST00000220324 Gm48687 processed_pseudogene Interval_138942 chr6 93678164 93679338 + 0 NA exon (ENSMUSG00000045095.16, exon 22 of 22) protein_coding-exon (ENSMUSG00000045095.16, exon 22 of 22) -28526 ENSMUSG00000107739.1 ENSMUSG00000107739 ENSMUST00000203479 Gm7812 processed_pseudogene Interval_41156 chr12 111537472 111539204 + 0 NA promoter-TSS (ENSMUSG00000021282.17) protein_coding-promoter-TSS (ENSMUSG00000021282.17) -1241 ENSMUSG00000021282.17 ENSMUSG00000021282 ENSMUST00000221243 Eif5 protein_coding Interval_44752 chr13 48245086 48246141 + 0 NA intron (ENSMUSG00000114860.1, intron 1 of 1) antisense-intron (ENSMUSG00000097622.2, intron 1 of 2) -8362 ENSMUSG00000114457.1 ENSMUSG00000114457 ENSMUST00000225626 Gm36346 lincRNA Interval_153174 chr7 142070749 142071487 + 0 NA Intergenic Intergenic 7319 ENSMUSG00000077409.1 ENSMUSG00000077409 ENSMUST00000104221 Gm25416 snRNA Interval_77051 chr17 86038398 86038698 + 0 NA intron (ENSMUSG00000024135.10, intron 16 of 20) protein_coding-intron (ENSMUSG00000024135.10, intron 16 of 20) 1816 ENSMUSG00000024135.10 ENSMUSG00000024135 ENSMUST00000234595 Srbd1 protein_coding Interval_13159 chr10 12642951 12643673 + 0 NA intron (ENSMUSG00000019820.11, intron 47 of 74) protein_coding-intron (ENSMUSG00000019820.11, intron 46 of 73) 45550 ENSMUSG00000019820.11 ENSMUSG00000019820 ENSMUST00000219135 Utrn protein_coding Interval_2802 chr1 45574924 45575707 + 0 NA Intergenic Intergenic -26711 ENSMUSG00000100894.1 ENSMUSG00000100894 ENSMUST00000185744 Gm8304 processed_pseudogene Interval_48261 chr13 97500631 97501069 + 0 NA Intergenic Intergenic -10354 ENSMUSG00000114926.1 ENSMUSG00000114926 ENSMUST00000225874 Gm2379 lincRNA Interval_164904 chr9 43002939 43004429 + 0 NA intron (ENSMUSG00000059495.14, intron 15 of 40) protein_coding-intron (ENSMUSG00000059495.14, intron 15 of 41) 22976 ENSMUSG00000059495.14 ENSMUSG00000059495 ENSMUST00000214175 Arhgef12 protein_coding Interval_6743 chr1 119134345 119135077 + 0 NA Intergenic Intergenic -22875 ENSMUSG00000096939.1 ENSMUSG00000096939 ENSMUST00000181691 Gm8321 processed_pseudogene Interval_83516 chr18 88736758 88737404 + 0 NA intron (ENSMUSG00000056153.15, intron 6 of 7) protein_coding-intron (ENSMUSG00000056153.15, intron 6 of 7) -78467 ENSMUSG00000118247.1 ENSMUSG00000118247 ENSMUST00000235328 Gm7662 processed_pseudogene Interval_32411 chr11 107394448 107396393 + 0 NA intron (ENSMUSG00000040430.18, intron 1 of 9) protein_coding-intron (ENSMUSG00000040430.18, intron 1 of 9) 8437 ENSMUSG00000087683.1 ENSMUSG00000087683 ENSMUST00000129139 Gm11712 antisense Interval_111725 chr4 26807516 26807838 + 0 NA Intergenic Intergenic -102228 ENSMUSG00000086257.1 ENSMUSG00000086257 ENSMUST00000154459 4930548K13Rik lincRNA Interval_32193 chr11 106038804 106039104 + 0 NA intron (ENSMUSG00000049354.8, intron 1 of 3) protein_coding-intron (ENSMUSG00000049354.8, intron 1 of 6) 2054 ENSMUSG00000049354.8 ENSMUSG00000049354 ENSMUST00000106891 Dcaf7 protein_coding Interval_152723 chr7 136871757 136873055 + 0 NA Intergenic Intergenic -22208 ENSMUSG00000054612.4 ENSMUSG00000054612 ENSMUST00000081510 Mgmt protein_coding Interval_62534 chr15 94476779 94478790 + 0 NA Intergenic Intergenic 65709 ENSMUSG00000033356.3 ENSMUSG00000033356 ENSMUST00000134061 Pus7l protein_coding Interval_147744 chr7 73310361 73311218 + 0 NA exon (ENSMUSG00000108530.1, exon 1 of 3) lincRNA-exon (ENSMUSG00000108530.1, exon 1 of 3) 259 ENSMUSG00000108530.1 ENSMUSG00000108530 ENSMUST00000205600 4930429H19Rik lincRNA Interval_29351 chr11 83394786 83395478 + 0 NA intron (ENSMUSG00000035152.14, intron 19 of 20) protein_coding-intron (ENSMUSG00000035152.14, intron 20 of 21) -14556 ENSMUSG00000020684.14 ENSMUSG00000020684 ENSMUST00000164425 Rasl10b protein_coding Interval_166085 chr9 56505844 56507291 + 0 NA promoter-TSS (ENSMUSG00000111343.1) TEC-promoter-TSS (ENSMUSG00000111343.1) 94 ENSMUSG00000111343.1 ENSMUSG00000111343 ENSMUST00000216940 Gm47175 TEC Interval_132980 chr5 149076555 149077035 + 0 NA intron (ENSMUSG00000066551.12, intron 2 of 5) protein_coding-intron (ENSMUSG00000066551.12, intron 2 of 5) 46617 ENSMUSG00000097191.2 ENSMUSG00000097191 ENSMUST00000200718 Mm2pr lincRNA Interval_40782 chr12 108333142 108334825 + 0 NA promoter-TSS (ENSMUSG00000021259.5) protein_coding-promoter-TSS (ENSMUSG00000021259.5) -5953 ENSMUSG00000097847.1 ENSMUSG00000097847 ENSMUST00000181875 4930478K11Rik antisense Interval_132883 chr5 148506665 148507044 + 0 NA intron (ENSMUSG00000001687.15, intron 3 of 4) protein_coding-intron (ENSMUSG00000001687.15, intron 3 of 4) 44802 ENSMUSG00000001687.15 ENSMUSG00000001687 ENSMUST00000201597 Ubl3 protein_coding Interval_112141 chr4 34917504 34918269 + 0 NA Intergenic Intergenic -1243 ENSMUSG00000083956.1 ENSMUSG00000083956 ENSMUST00000119806 Gm12361 processed_pseudogene Interval_168454 chr9 80922016 80922347 + 0 NA Intergenic Intergenic 5032 ENSMUSG00000098935.1 ENSMUSG00000098935 ENSMUST00000183833 Gm27225 processed_pseudogene Interval_103090 chr3 35170888 35171561 + 0 NA Intergenic Intergenic 104907 ENSMUSG00000105651.1 ENSMUSG00000105651 ENSMUST00000198307 1700017M07Rik lincRNA Interval_170059 chr9 104129681 104130371 + 0 NA Intergenic Intergenic 7276 ENSMUSG00000090150.10 ENSMUSG00000090150 ENSMUST00000128714 Acad11 protein_coding Interval_111000 chr4 11122471 11124270 + 0 NA promoter-TSS (ENSMUSG00000086765.7) lincRNA-promoter-TSS (ENSMUSG00000086765.7) 565 ENSMUSG00000086765.7 ENSMUSG00000086765 ENSMUST00000142297 Gm11827 lincRNA Interval_125909 chr5 75625842 75627202 + 0 NA intron (ENSMUSG00000005672.12, intron 7 of 20) protein_coding-intron (ENSMUSG00000005672.12, intron 7 of 20) -22572 ENSMUSG00000005672.12 ENSMUSG00000005672 ENSMUST00000201240 Kit protein_coding Interval_15666 chr10 53328750 53328973 + 0 NA intron (ENSMUSG00000038594.9, intron 3 of 12) protein_coding-intron (ENSMUSG00000038594.9, intron 3 of 12) -8824 ENSMUSG00000038583.13 ENSMUSG00000038583 ENSMUST00000219921 Pln protein_coding Interval_116180 chr4 108418026 108418811 + 0 NA Intergenic Intergenic -11694 ENSMUSG00000028597.11 ENSMUSG00000028597 ENSMUST00000184609 Gpx7 protein_coding Interval_170518 chr9 108460058 108461817 + 0 NA promoter-TSS (ENSMUSG00000032609.12) protein_coding-promoter-TSS (ENSMUSG00000032609.12) 402 ENSMUSG00000049305.6 ENSMUSG00000049305 ENSMUST00000193170 Ccdc71 protein_coding Interval_13475 chr10 18503184 18503427 + 0 NA intron (ENSMUSG00000039835.16, intron 3 of 6) protein_coding-intron (ENSMUSG00000039835.16, intron 3 of 6) 42759 ENSMUSG00000019853.6 ENSMUSG00000019853 ENSMUST00000214548 Hebp2 protein_coding Interval_34476 chr12 4533923 4534471 + 0 NA Intergenic Intergenic 10084 ENSMUSG00000112422.1 ENSMUSG00000112422 ENSMUST00000218081 Gm31938 lincRNA Interval_74372 chr17 49641376 49641895 + 0 NA intron (ENSMUSG00000023999.14, intron 4 of 5) protein_coding-intron (ENSMUSG00000023999.14, intron 3 of 11) 26463 ENSMUSG00000023999.14 ENSMUSG00000023999 ENSMUST00000159354 Kif6 protein_coding Interval_39339 chr12 86807356 86807607 + 0 NA Intergenic Intergenic -2476 ENSMUSG00000088403.1 ENSMUSG00000088403 ENSMUST00000157778 Gm25888 misc_RNA Interval_152928 chr7 139833670 139834717 + 0 NA promoter-TSS (ENSMUSG00000025475.17) protein_coding-promoter-TSS (ENSMUSG00000025475.17) -172 ENSMUSG00000025475.17 ENSMUSG00000025475 ENSMUST00000129454 Adgra1 protein_coding Interval_96473 chr2 124404110 124405783 + 0 NA intron (ENSMUSG00000027200.17, intron 4 of 20) protein_coding-intron (ENSMUSG00000027200.17, intron 4 of 20) -182615 ENSMUSG00000086954.1 ENSMUSG00000086954 ENSMUST00000136658 4930583P06Rik lincRNA Interval_76887 chr17 84738030 84738541 + 0 NA intron (ENSMUSG00000024120.12, intron 4 of 5) protein_coding-intron (ENSMUSG00000024120.12, intron 25 of 37) -7101 ENSMUSG00000024120.12 ENSMUSG00000024120 ENSMUST00000159222 Lrpprc protein_coding Interval_24336 chr11 32486825 32487981 + 0 NA intron (ENSMUSG00000044949.4, intron 1 of 2) protein_coding-intron (ENSMUSG00000044949.4, intron 1 of 2) 32033 ENSMUSG00000044949.4 ENSMUSG00000044949 ENSMUST00000051053 Ubtd2 protein_coding Interval_24795 chr11 38120835 38122137 + 0 NA Intergenic Intergenic -84223 ENSMUSG00000093184.1 ENSMUSG00000093184 ENSMUST00000175443 Gm25693 miRNA Interval_53984 chr14 64070034 64071199 + 0 NA Intergenic Intergenic 14835 ENSMUSG00000034623.14 ENSMUSG00000034623 ENSMUST00000169113 Prss55 protein_coding Interval_39391 chr12 87101735 87103002 + 0 NA promoter-TSS (ENSMUSG00000021032.13) protein_coding-promoter-TSS (ENSMUSG00000021032.13) 154 ENSMUSG00000021032.13 ENSMUSG00000021032 ENSMUST00000110176 Ngb protein_coding Interval_24089 chr11 30147972 30149433 + 0 NA intron (ENSMUSG00000020315.18, intron 7 of 30) protein_coding-intron (ENSMUSG00000020315.18, intron 7 of 35) 42308 ENSMUSG00000101872.1 ENSMUSG00000101872 ENSMUST00000186216 Gm29237 antisense Interval_136627 chr6 56800302 56800593 + 0 NA Intergenic Intergenic 2856 ENSMUSG00000108080.1 ENSMUSG00000108080 ENSMUST00000203397 Gm10209 TEC Interval_118652 chr4 133003002 133003544 + 0 NA Intergenic Intergenic -8565 ENSMUSG00000037692.14 ENSMUSG00000037692 ENSMUST00000148518 Ahdc1 protein_coding Interval_53251 chr14 55584727 55585729 + 0 NA promoter-TSS (ENSMUSG00000022217.14) protein_coding-promoter-TSS (ENSMUSG00000022217.14) -17 ENSMUSG00000022217.14 ENSMUSG00000022217 ENSMUST00000174618 Emc9 protein_coding Interval_171165 chr9 114902382 114903123 + 0 NA TTS (ENSMUSG00000050627.13) protein_coding-TTS (ENSMUSG00000050627.13) 31235 ENSMUSG00000050627.13 ENSMUSG00000050627 ENSMUST00000146266 Gpd1l protein_coding Interval_172706 chrX 44367346 44368510 + 0 NA exon (ENSMUSG00000050926.5, exon 1 of 1) protein_coding-exon (ENSMUSG00000050926.5, exon 1 of 1) 414 ENSMUSG00000050926.5 ENSMUSG00000050926 ENSMUST00000115057 Dcaf12l2 protein_coding Interval_83405 chr18 84933640 84935365 + 0 NA promoter-TSS (ENSMUSG00000034391.12) protein_coding-promoter-TSS (ENSMUSG00000034391.12) -526 ENSMUSG00000034391.12 ENSMUSG00000034391 ENSMUST00000225015 Fbxo15 protein_coding Interval_31961 chr11 104186374 104186631 + 0 NA exon (ENSMUSG00000049506.7, exon 1 of 2) protein_coding-exon (ENSMUSG00000049506.7, exon 1 of 2) 175 ENSMUSG00000049506.7 ENSMUSG00000049506 ENSMUST00000059448 Sppl2c protein_coding Interval_70261 chr17 7771172 7773492 + 0 NA exon (ENSMUSG00000071984.11, exon 8 of 20) protein_coding-exon (ENSMUSG00000071984.11, exon 8 of 20) 54970 ENSMUSG00000071984.11 ENSMUSG00000071984 ENSMUST00000167580 Fndc1 protein_coding Interval_70025 chr17 4723972 4724211 + 0 NA Intergenic Intergenic 46071 ENSMUSG00000096200.1 ENSMUSG00000096200 ENSMUST00000180078 Gm23186 snRNA Interval_76922 chr17 84987212 84988370 + 0 NA intron (ENSMUSG00000061130.13, intron 2 of 7) protein_coding-intron (ENSMUSG00000061130.13, intron 1 of 5) -5889 ENSMUSG00000061130.13 ENSMUSG00000061130 ENSMUST00000234851 Ppm1b protein_coding Interval_10218 chr1 167269926 167271712 + 0 NA intron (ENSMUSG00000026558.13, intron 1 of 2) protein_coding-intron (ENSMUSG00000026558.13, intron 1 of 6) -14249 ENSMUSG00000102909.1 ENSMUSG00000102909 ENSMUST00000193383 Gm2453 lincRNA Interval_19001 chr10 93695049 93695699 + 0 NA intron (ENSMUSG00000020019.4, intron 3 of 9) protein_coding-intron (ENSMUSG00000020019.4, intron 3 of 9) -12052 ENSMUSG00000085723.2 ENSMUSG00000085723 ENSMUST00000147379 Gm15915 antisense Interval_90055 chr2 27565324 27565569 + 0 NA Intergenic Intergenic 25020 ENSMUSG00000085929.1 ENSMUSG00000085929 ENSMUST00000132898 Gm13421 processed_transcript Interval_48728 chr13 102420968 102421942 + 0 NA Intergenic Intergenic -54303 ENSMUSG00000114444.1 ENSMUSG00000114444 ENSMUST00000225142 Gm47008 processed_pseudogene Interval_156057 chr8 43260890 43261605 + 0 NA Intergenic Intergenic 45689 ENSMUSG00000051176.6 ENSMUSG00000051176 ENSMUST00000082120 Zfp42 protein_coding Interval_65915 chr16 30212910 30213890 + 0 NA Intergenic Intergenic -7521 ENSMUSG00000097621.1 ENSMUSG00000097621 ENSMUST00000181113 Gm26562 lincRNA Interval_91837 chr2 50087991 50088256 + 0 NA intron (ENSMUSG00000050447.15, intron 1 of 4) protein_coding-intron (ENSMUSG00000050447.15, intron 1 of 5) -40246 ENSMUSG00000050447.15 ENSMUSG00000050447 ENSMUST00000126337 Lypd6 protein_coding Interval_44518 chr13 45608540 45608761 + 0 NA intron (ENSMUSG00000046876.16, intron 5 of 6) protein_coding-intron (ENSMUSG00000046876.16, intron 6 of 7) 62497 ENSMUSG00000000253.13 ENSMUSG00000000253 ENSMUST00000222227 Gmpr protein_coding Interval_110067 chr3 152945131 152946136 + 0 NA intron (ENSMUSG00000039047.17, intron 14 of 14) protein_coding-intron (ENSMUSG00000039037.5, intron 2 of 4) 2320 ENSMUSG00000090163.1 ENSMUSG00000090163 ENSMUST00000160432 Gm16231 antisense Interval_138854 chr6 92569339 92570258 + 0 NA intron (ENSMUSG00000030020.13, intron 2 of 8) protein_coding-intron (ENSMUSG00000030020.13, intron 2 of 8) -2432 ENSMUSG00000030020.13 ENSMUSG00000030020 ENSMUST00000113445 Prickle2 protein_coding Interval_152228 chr7 130768033 130768735 + 0 NA intron (ENSMUSG00000030849.18, intron 2 of 6) protein_coding-intron (ENSMUSG00000030849.18, intron 2 of 6) 1431 ENSMUSG00000109104.1 ENSMUSG00000109104 ENSMUST00000208365 Gm6108 processed_pseudogene Interval_27948 chr11 71357283 71357537 + 0 NA Intergenic Intergenic -68852 ENSMUSG00000096455.1 ENSMUSG00000096455 ENSMUST00000104152 Gm23311 snoRNA Interval_102692 chr3 30209227 30209742 + 0 NA intron (ENSMUSG00000027684.16, intron 2 of 2) protein_coding-intron (ENSMUSG00000027684.16, intron 2 of 11) 18210 ENSMUSG00000102460.1 ENSMUSG00000102460 ENSMUST00000192320 Gm38197 TEC Interval_155765 chr8 37063777 37064270 + 0 NA Intergenic Intergenic 26286 ENSMUSG00000109817.1 ENSMUSG00000109817 ENSMUST00000211556 Gm10683 TEC Interval_9086 chr1 153500026 153500778 + 0 NA Intergenic Intergenic -22263 ENSMUSG00000042699.11 ENSMUSG00000042699 ENSMUST00000189425 Dhx9 protein_coding Interval_80337 chr18 39397162 39398087 + 0 NA Intergenic Intergenic -8199 ENSMUSG00000085289.1 ENSMUSG00000085289 ENSMUST00000135378 Gm15337 antisense Interval_43725 chr13 35777683 35777938 + 0 NA promoter-TSS (ENSMUSG00000114373.1) antisense-promoter-TSS (ENSMUSG00000114373.1) -914 ENSMUSG00000114373.1 ENSMUSG00000114373 ENSMUST00000224745 Gm48708 antisense Interval_109686 chr3 145998344 145999082 + 0 NA TTS (ENSMUSG00000036863.12) protein_coding-TTS (ENSMUSG00000036863.12) 10576 ENSMUSG00000036863.12 ENSMUSG00000036863 ENSMUST00000195918 Syde2 protein_coding Interval_154947 chr8 25223281 25223877 + 0 NA intron (ENSMUSG00000065954.11, intron 1 of 4) protein_coding-intron (ENSMUSG00000065954.11, intron 1 of 2) -22130 ENSMUSG00000065954.11 ENSMUSG00000065954 ENSMUST00000211218 Tacc1 protein_coding Interval_127934 chr5 109524484 109524759 + 0 NA Intergenic Intergenic 4849 ENSMUSG00000093688.1 ENSMUSG00000093688 ENSMUST00000176112 Gm8488 processed_pseudogene Interval_36652 chr12 51768304 51769322 + 0 NA exon (ENSMUSG00000035247.16, exon 25 of 43) protein_coding-exon (ENSMUSG00000035247.16, exon 25 of 43) 13768 ENSMUSG00000035247.16 ENSMUSG00000035247 ENSMUST00000217804 Hectd1 protein_coding Interval_66792 chr16 37665165 37666298 + 0 NA Intergenic Intergenic -11365 ENSMUSG00000022820.4 ENSMUSG00000022820 ENSMUST00000231881 Ndufb4 protein_coding Interval_72694 chr17 31585715 31586324 + 0 NA intron (ENSMUSG00000006705.13, intron 2 of 10) protein_coding-intron (ENSMUSG00000006705.13, intron 2 of 10) -2458 ENSMUSG00000006705.13 ENSMUSG00000006705 ENSMUST00000176513 Pknox1 protein_coding Interval_23655 chr11 24111896 24112624 + 0 NA intron (ENSMUSG00000086612.1, intron 3 of 3) protein_coding-intron (ENSMUSG00000000861.15, intron 2 of 4) 3145 ENSMUSG00000086612.1 ENSMUSG00000086612 ENSMUST00000133819 Gm12064 antisense Interval_99765 chr2 164776794 164777704 + 0 NA TTS (ENSMUSG00000017300.9) protein_coding-TTS (ENSMUSG00000017300.9) 2718 ENSMUSG00000017300.9 ENSMUSG00000017300 ENSMUST00000155443 Tnnc2 protein_coding Interval_59572 chr15 55449128 55449802 + 0 NA intron (ENSMUSG00000022371.16, intron 1 of 17) protein_coding-intron (ENSMUSG00000022371.16, intron 31 of 47) 639 ENSMUSG00000022371.16 ENSMUSG00000022371 ENSMUST00000125416 Col14a1 protein_coding Interval_151626 chr7 125469482 125470437 + 0 NA intron (ENSMUSG00000030750.13, intron 5 of 7) protein_coding-intron (ENSMUSG00000030750.13, intron 5 of 7) 8600 ENSMUSG00000030750.13 ENSMUSG00000030750 ENSMUST00000149289 Nsmce1 protein_coding Interval_40479 chr12 105104208 105104457 + 0 NA Intergenic Intergenic -30864 ENSMUSG00000113051.1 ENSMUSG00000113051 ENSMUST00000222354 Gm47672 processed_pseudogene Interval_94820 chr2 94826804 94827011 + 0 NA Intergenic Intergenic -34571 ENSMUSG00000077281.1 ENSMUSG00000077281 ENSMUST00000104093 Gm26396 snoRNA Interval_152769 chr7 137404363 137405470 + 0 NA intron (ENSMUSG00000040139.14, intron 1 of 1) protein_coding-intron (ENSMUSG00000040139.14, intron 1 of 3) 5840 ENSMUSG00000040139.14 ENSMUSG00000040139 ENSMUST00000120340 9430038I01Rik protein_coding Interval_24785 chr11 37752442 37753626 + 0 NA Intergenic Intergenic 94045 ENSMUSG00000087388.1 ENSMUSG00000087388 ENSMUST00000131013 Gm12128 lincRNA Interval_119076 chr4 135380855 135382888 + 0 NA intron (ENSMUSG00000043924.16, intron 1 of 3) protein_coding-intron (ENSMUSG00000043924.16, intron 1 of 3) 4713 ENSMUSG00000084032.1 ENSMUSG00000084032 ENSMUST00000120561 Gm12991 processed_pseudogene Interval_12643 chr10 4105830 4106477 + 0 NA intron (ENSMUSG00000040675.17, intron 25 of 27) protein_coding-intron (ENSMUSG00000040675.17, intron 25 of 27) 1840 ENSMUSG00000065792.1 ENSMUSG00000065792 ENSMUST00000083858 Gm25515 snRNA Interval_35455 chr12 21964754 21965310 + 0 NA Intergenic Intergenic -75881 ENSMUSG00000094691.1 ENSMUSG00000094691 ENSMUST00000177620 Gm22908 miRNA Interval_88288 chr2 3408166 3408871 + 0 NA TTS (ENSMUSG00000026650.15) protein_coding-TTS (ENSMUSG00000026650.15) -11308 ENSMUSG00000026645.11 ENSMUSG00000026645 ENSMUST00000115087 Olah protein_coding Interval_91621 chr2 44878984 44879603 + 0 NA intron (ENSMUSG00000036890.13, intron 1 of 5) protein_coding-intron (ENSMUSG00000036890.13, intron 1 of 4) -17018 ENSMUSG00000036890.13 ENSMUSG00000036890 ENSMUST00000133442 Gtdc1 protein_coding Interval_104497 chr3 66865180 66865964 + 0 NA Intergenic Intergenic -16778 ENSMUSG00000103700.1 ENSMUSG00000103700 ENSMUST00000195167 Gm6555 processed_pseudogene Interval_49238 chr13 109736060 109736518 + 0 NA intron (ENSMUSG00000021699.17, intron 1 of 4) protein_coding-intron (ENSMUSG00000021699.17, intron 1 of 14) -167520 ENSMUSG00000084651.1 ENSMUSG00000084651 ENSMUST00000122702 Mir1904 miRNA Interval_19710 chr10 108237999 108238331 + 0 NA intron (ENSMUSG00000019907.10, intron 5 of 24) protein_coding-intron (ENSMUSG00000019907.10, intron 5 of 25) -11429 ENSMUSG00000019907.10 ENSMUSG00000019907 ENSMUST00000219559 Ppp1r12a protein_coding Interval_69632 chr16 94743509 94744527 + 0 NA intron (ENSMUSG00000116641.1, intron 1 of 4) antisense-intron (ENSMUSG00000116641.1, intron 1 of 4) 22124 ENSMUSG00000116641.1 ENSMUSG00000116641 ENSMUST00000232585 Gm41505 antisense Interval_28932 chr11 79350538 79351355 + 0 NA intron (ENSMUSG00000020716.16, intron 1 of 30) protein_coding-intron (ENSMUSG00000020716.16, intron 1 of 57) 11154 ENSMUSG00000020716.16 ENSMUSG00000020716 ENSMUST00000137997 Nf1 protein_coding Interval_51939 chr14 34106501 34107260 + 0 NA TTS (ENSMUSG00000088533.1) snoRNA-TTS (ENSMUSG00000088533.1) 724 ENSMUSG00000088533.1 ENSMUSG00000088533 ENSMUST00000157908 Gm24998 snoRNA Interval_85533 chr19 28158834 28159539 + 0 NA Intergenic Intergenic -12883 ENSMUSG00000117862.1 ENSMUSG00000117862 ENSMUST00000236360 Gm35781 processed_pseudogene Interval_51737 chr14 31794223 31794936 + 0 NA intron (ENSMUSG00000014496.8, intron 1 of 27) protein_coding-intron (ENSMUSG00000014496.8, intron 1 of 27) -8290 ENSMUSG00000115812.1 ENSMUSG00000115812 ENSMUST00000228722 Gm49309 transcribed_processed_pseudogene Interval_122482 chr5 23377030 23378169 + 0 NA TTS (ENSMUSG00000105091.1) processed_pseudogene-TTS (ENSMUSG00000105091.1) 1103 ENSMUSG00000105091.1 ENSMUSG00000105091 ENSMUST00000196054 Gm43722 processed_pseudogene Interval_144301 chr7 24376910 24377864 + 0 NA exon (ENSMUSG00000054342.8, exon 3 of 9) protein_coding-exon (ENSMUSG00000054342.8, exon 3 of 9) -5667 ENSMUSG00000054342.8 ENSMUSG00000054342 ENSMUST00000206910 Kcnn4 protein_coding Interval_148158 chr7 79543289 79544581 + 0 NA intron (ENSMUSG00000108616.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000108616.1, intron 1 of 1) 7892 ENSMUSG00000108616.1 ENSMUSG00000108616 ENSMUST00000206829 Gm35040 lincRNA Interval_95275 chr2 105476398 105476817 + 0 NA exon (ENSMUSG00000086764.1, exon 1 of 2) lincRNA-exon (ENSMUSG00000086764.1, exon 1 of 2) 106 ENSMUSG00000086764.1 ENSMUSG00000086764 ENSMUST00000130677 4930527A07Rik lincRNA Interval_31857 chr11 103402323 103402498 + 0 NA intron (ENSMUSG00000034247.9, intron 2 of 11) protein_coding-intron (ENSMUSG00000034247.9, intron 2 of 11) -7642 ENSMUSG00000034247.9 ENSMUSG00000034247 ENSMUST00000184350 Plekhm1 protein_coding Interval_148855 chr7 89325046 89325545 + 0 NA intron (ENSMUSG00000039428.11, intron 1 of 8) protein_coding-intron (ENSMUSG00000039428.11, intron 1 of 14) -13075 ENSMUSG00000109327.1 ENSMUSG00000109327 ENSMUST00000207056 Gm44995 antisense Interval_165578 chr9 49796516 49799176 + 0 NA intron (ENSMUSG00000039542.16, intron 1 of 1) protein_coding-intron (ENSMUSG00000039542.16, intron 1 of 15) 1076 ENSMUSG00000039542.16 ENSMUSG00000039542 ENSMUST00000217121 Ncam1 protein_coding Interval_30925 chr11 97249762 97250180 + 0 NA intron (ENSMUSG00000001441.13, intron 3 of 21) protein_coding-intron (ENSMUSG00000001441.13, intron 3 of 22) -30157 ENSMUSG00000086680.2 ENSMUSG00000086680 ENSMUST00000133160 Gm11592 antisense Interval_47592 chr13 89665988 89666789 + 0 NA intron (ENSMUSG00000021614.16, intron 1 of 2) protein_coding-intron (ENSMUSG00000021614.16, intron 10 of 12) 3618 ENSMUSG00000089972.3 ENSMUSG00000089972 ENSMUST00000162402 Gm16318 processed_pseudogene Interval_37190 chr12 59323979 59324868 + 0 NA Intergenic Intergenic -6254 ENSMUSG00000112583.1 ENSMUSG00000112583 ENSMUST00000219926 Gm4930 processed_pseudogene Interval_74189 chr17 46996719 46996957 + 0 NA intron (ENSMUSG00000023977.15, intron 2 of 28) protein_coding-intron (ENSMUSG00000023977.15, intron 2 of 46) -3922 ENSMUSG00000084572.1 ENSMUSG00000084572 ENSMUST00000122623 Gm23657 misc_RNA Interval_49153 chr13 108705398 108705620 + 0 NA intron (ENSMUSG00000021699.17, intron 3 of 3) protein_coding-intron (ENSMUSG00000021699.17, intron 1 of 16) 34906 ENSMUSG00000059751.7 ENSMUSG00000059751 ENSMUST00000074680 Rps3a3 processed_pseudogene Interval_86569 chr19 41763978 41764359 + 0 NA Intergenic Intergenic 19364 ENSMUSG00000088220.1 ENSMUSG00000088220 ENSMUST00000157595 Gm22601 misc_RNA Interval_26188 chr11 54971813 54972396 + 0 NA Intergenic Intergenic -16057 ENSMUSG00000020400.17 ENSMUSG00000020400 ENSMUST00000132776 Tnip1 protein_coding Interval_12488 chr1 194219576 194219778 + 0 NA intron (ENSMUSG00000103692.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000103692.1, intron 1 of 2) 3082 ENSMUSG00000103692.1 ENSMUSG00000103692 ENSMUST00000193395 4930503O07Rik lincRNA Interval_37669 chr12 70995314 70995532 + 0 NA TTS (ENSMUSG00000060073.9) protein_coding-TTS (ENSMUSG00000060073.9) 20172 ENSMUSG00000085622.9 ENSMUSG00000085622 ENSMUST00000222159 3110056K07Rik processed_transcript Interval_93618 chr2 75028237 75028433 + 0 NA Intergenic Intergenic -92821 ENSMUSG00000084574.1 ENSMUSG00000084574 ENSMUST00000122625 n-R5s198 rRNA Interval_76016 chr17 74390153 74390534 + 0 NA exon (ENSMUSG00000024068.8, exon 17 of 17) protein_coding-exon (ENSMUSG00000024068.8, exon 17 of 17) -5302 ENSMUSG00000024069.14 ENSMUSG00000024069 ENSMUST00000233180 Slc30a6 protein_coding Interval_61147 chr15 79491968 79492166 + 0 NA intron (ENSMUSG00000044216.7, intron 1 of 1) protein_coding-intron (ENSMUSG00000044216.7, intron 1 of 1) -9393 ENSMUSG00000116081.1 ENSMUSG00000116081 ENSMUST00000229365 Gm49593 TEC Interval_27974 chr11 71763690 71764099 + 0 NA intron (ENSMUSG00000020811.16, intron 2 of 8) protein_coding-intron (ENSMUSG00000020811.16, intron 2 of 8) 13974 ENSMUSG00000020811.16 ENSMUSG00000020811 ENSMUST00000132095 Wscd1 protein_coding Interval_91229 chr2 36102079 36105746 + 0 NA promoter-TSS (ENSMUSG00000026890.19) protein_coding-promoter-TSS (ENSMUSG00000026890.19) -320 ENSMUSG00000026890.19 ENSMUSG00000026890 ENSMUST00000137436 Lhx6 protein_coding Interval_73424 chr17 37133368 37133959 + 0 NA Intergenic Intergenic 2754 ENSMUSG00000092223.1 ENSMUSG00000092223 ENSMUST00000173971 Gm19807 processed_pseudogene Interval_33614 chr11 117521931 117522288 + 0 NA Intergenic Intergenic -1494 ENSMUSG00000085419.1 ENSMUSG00000085419 ENSMUST00000132261 Gm11734 lincRNA Interval_58426 chr15 34436561 34439074 + 0 NA Intergenic Intergenic 3105 ENSMUSG00000065899.1 ENSMUSG00000065899 ENSMUST00000083965 Gm24523 snoRNA Interval_121161 chr4 153666567 153667082 + 0 NA Intergenic Intergenic -184645 ENSMUSG00000039546.9 ENSMUSG00000039546 ENSMUST00000149177 Ajap1 protein_coding Interval_130726 chr5 129995176 129995748 + 0 NA exon (ENSMUSG00000025534.17, exon 9 of 12) protein_coding-exon (ENSMUSG00000025534.17, exon 9 of 12) 7366 ENSMUSG00000025534.17 ENSMUSG00000025534 ENSMUST00000122994 Gusb protein_coding Interval_55986 chr14 103694120 103694633 + 0 NA exon (ENSMUSG00000089707.1, exon 3 of 3) antisense-exon (ENSMUSG00000089707.1, exon 3 of 3) 5066 ENSMUSG00000089707.1 ENSMUSG00000089707 ENSMUST00000160117 Slain1os antisense Interval_30085 chr11 89074779 89075383 + 0 NA promoter-TSS (ENSMUSG00000072553.10) protein_coding-promoter-TSS (ENSMUSG00000072553.10) 72 ENSMUSG00000072553.10 ENSMUSG00000072553 ENSMUST00000127186 Gm525 protein_coding Interval_56358 chr14 118042501 118043783 + 0 NA promoter-TSS (ENSMUSG00000022129.4) protein_coding-promoter-TSS (ENSMUSG00000022129.4) -1832 ENSMUSG00000115689.1 ENSMUSG00000115689 ENSMUST00000228171 4930435M08Rik antisense Interval_51987 chr14 34449577 34450065 + 0 NA intron (ENSMUSG00000021796.15, intron 3 of 4) protein_coding-intron (ENSMUSG00000021796.15, intron 2 of 12) -51894 ENSMUSG00000090779.1 ENSMUSG00000090779 ENSMUST00000171248 Gm17110 antisense Interval_133691 chr6 8741787 8742688 + 0 NA intron (ENSMUSG00000062995.12, intron 4 of 10) protein_coding-intron (ENSMUSG00000062995.12, intron 5 of 13) 16162 ENSMUSG00000062995.12 ENSMUSG00000062995 ENSMUST00000151758 Ica1 protein_coding Interval_98145 chr2 148745361 148746279 + 0 NA Intergenic Intergenic -4538 ENSMUSG00000055177.15 ENSMUSG00000055177 ENSMUST00000109952 Cstl1 protein_coding Interval_16364 chr10 62500166 62500478 + 0 NA intron (ENSMUSG00000020077.14, intron 2 of 3) protein_coding-intron (ENSMUSG00000020077.14, intron 1 of 2) -13590 ENSMUSG00000020078.16 ENSMUSG00000020078 ENSMUST00000217868 Vps26a protein_coding Interval_148159 chr7 79547041 79547692 + 0 NA intron (ENSMUSG00000108616.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000108616.1, intron 1 of 1) 11323 ENSMUSG00000108616.1 ENSMUSG00000108616 ENSMUST00000206829 Gm35040 lincRNA Interval_37823 chr12 72273680 72274412 + 0 NA intron (ENSMUSG00000021087.18, intron 3 of 8) protein_coding-intron (ENSMUSG00000021087.18, intron 3 of 8) -37498 ENSMUSG00000021087.18 ENSMUSG00000021087 ENSMUST00000221756 Rtn1 protein_coding Interval_168213 chr9 77985201 77986561 + 0 NA Intergenic Intergenic -6718 ENSMUSG00000111610.1 ENSMUSG00000111610 ENSMUST00000216017 Gm34829 lincRNA Interval_80618 chr18 44642806 44644354 + 0 NA intron (ENSMUSG00000071856.10, intron 3 of 18) protein_coding-intron (ENSMUSG00000071856.10, intron 3 of 18) -18523 ENSMUSG00000097610.2 ENSMUSG00000097610 ENSMUST00000202771 A930012L18Rik antisense Interval_14178 chr10 28364216 28364837 + 0 NA intron (ENSMUSG00000019889.10, intron 6 of 14) protein_coding-intron (ENSMUSG00000019889.10, intron 6 of 31) -150405 ENSMUSG00000076377.1 ENSMUSG00000076377 ENSMUST00000102422 Gm22370 miRNA Interval_26875 chr11 61231040 61231983 + 0 NA intron (ENSMUSG00000010025.19, intron 9 of 9) protein_coding-intron (ENSMUSG00000010025.19, intron 9 of 9) 19499 ENSMUSG00000010025.19 ENSMUSG00000010025 ENSMUST00000149298 Aldh3a2 protein_coding Interval_88928 chr2 13043171 13043636 + 0 NA Intergenic Intergenic 7277 ENSMUSG00000103143.1 ENSMUSG00000103143 ENSMUST00000193263 Gm37742 TEC Interval_165238 chr9 45625926 45626599 + 0 NA intron (ENSMUSG00000032087.11, intron 3 of 32) protein_coding-intron (ENSMUSG00000032087.11, intron 3 of 32) 8550 ENSMUSG00000096202.1 ENSMUSG00000096202 ENSMUST00000179911 Gm22069 snRNA Interval_162405 chr8 128075678 128076116 + 0 NA Intergenic Intergenic 202328 ENSMUSG00000099326.1 ENSMUSG00000099326 ENSMUST00000184910 Mir21c miRNA Interval_22698 chr11 13315023 13316242 + 0 NA Intergenic Intergenic 317966 ENSMUSG00000084055.1 ENSMUSG00000084055 ENSMUST00000117869 Gm12004 processed_pseudogene Interval_117234 chr4 120824788 120826300 + 0 NA exon (ENSMUSG00000032897.17, exon 1 of 10) protein_coding-exon (ENSMUSG00000032897.17, exon 1 of 10) -11944 ENSMUSG00000096876.1 ENSMUSG00000096876 ENSMUST00000179354 Gm23936 miRNA Interval_142774 chr6 145545928 145546674 + 0 NA intron (ENSMUSG00000054966.13, intron 1 of 10) protein_coding-intron (ENSMUSG00000054966.13, intron 1 of 1) -69456 ENSMUSG00000067338.6 ENSMUSG00000067338 ENSMUST00000087445 Tuba3b protein_coding Interval_156675 chr8 56810757 56811364 + 0 NA Intergenic Intergenic 77830 ENSMUSG00000110000.1 ENSMUSG00000110000 ENSMUST00000209983 Gm33501 lincRNA Interval_174742 chrX 164502137 164502560 + 0 NA Intergenic Intergenic -3979 ENSMUSG00000031384.2 ENSMUSG00000031384 ENSMUST00000033756 Asb9 protein_coding Interval_169495 chr9 98472141 98472979 + 0 NA Intergenic Intergenic -13555 ENSMUSG00000032454.9 ENSMUSG00000032454 ENSMUST00000188779 Rbp2 protein_coding Interval_32979 chr11 113490871 113492157 + 0 NA intron (ENSMUSG00000041654.15, intron 4 of 4) protein_coding-intron (ENSMUSG00000041654.15, intron 5 of 10) 23537 ENSMUSG00000078251.2 ENSMUSG00000078251 ENSMUST00000105048 Gm16487 pseudogene Interval_60757 chr15 76556441 76557162 + 0 NA Intergenic Intergenic 17837 ENSMUSG00000022560.9 ENSMUSG00000022560 ENSMUST00000230994 Slc52a2 protein_coding Interval_155898 chr8 40862021 40863231 + 0 NA promoter-TSS (ENSMUSG00000031596.15) protein_coding-promoter-TSS (ENSMUSG00000031596.15) 48 ENSMUSG00000031596.15 ENSMUSG00000031596 ENSMUST00000118432 Slc7a2 protein_coding Interval_69580 chr16 94402458 94402731 + 0 NA intron (ENSMUSG00000040785.19, intron 9 of 44) protein_coding-intron (ENSMUSG00000040785.19, intron 10 of 45) 19686 ENSMUSG00000040785.19 ENSMUSG00000040785 ENSMUST00000129536 Ttc3 protein_coding Interval_41330 chr12 112875676 112878346 + 0 NA Intergenic Intergenic -1310 ENSMUSG00000113830.1 ENSMUSG00000113830 ENSMUST00000223214 1700127F24Rik lincRNA Interval_8539 chr1 141079694 141080034 + 0 NA Intergenic Intergenic 177293 ENSMUSG00000095238.2 ENSMUSG00000095238 ENSMUST00000179202 Gm4845 processed_pseudogene Interval_104130 chr3 58885151 58885401 + 0 NA promoter-TSS (ENSMUSG00000043850.15) protein_coding-promoter-TSS (ENSMUSG00000043850.15) -19479 ENSMUSG00000043850.15 ENSMUSG00000043850 ENSMUST00000161419 Clrn1 protein_coding Interval_144294 chr7 24342389 24342629 + 0 NA Intergenic Intergenic -6044 ENSMUSG00000088354.2 ENSMUSG00000088354 ENSMUST00000157729 Gm27592 miRNA Interval_72880 chr17 32891047 32892157 + 0 NA promoter-TSS (ENSMUSG00000095325.3) protein_coding-promoter-TSS (ENSMUSG00000095325.3) -69 ENSMUSG00000095325.3 ENSMUSG00000095325 ENSMUST00000228410 Zfp870 protein_coding Interval_52239 chr14 40948965 40949203 + 0 NA intron (ENSMUSG00000037824.6, intron 1 of 8) protein_coding-intron (ENSMUSG00000037824.6, intron 1 of 8) -14768 ENSMUSG00000037824.6 ENSMUSG00000037824 ENSMUST00000224349 Tspan14 protein_coding Interval_8782 chr1 151041175 151041449 + 0 NA Intergenic Intergenic 20798 ENSMUSG00000096851.1 ENSMUSG00000096851 ENSMUST00000180118 Gm22756 snRNA Interval_157694 chr8 72333229 72335499 + 0 NA Intergenic Intergenic 15331 ENSMUSG00000055148.7 ENSMUSG00000055148 ENSMUST00000067912 Klf2 protein_coding Interval_127712 chr5 106990312 106991074 + 0 NA Intergenic Intergenic 16147 ENSMUSG00000029283.17 ENSMUSG00000029283 ENSMUST00000123546 Cdc7 protein_coding Interval_146212 chr7 44726487 44727614 + 0 NA Intergenic Intergenic 17180 ENSMUSG00000048012.19 ENSMUSG00000048012 ENSMUST00000126366 Zfp473 protein_coding Interval_169417 chr9 97084605 97084901 + 0 NA promoter-TSS (ENSMUSG00000032449.13) protein_coding-promoter-TSS (ENSMUSG00000032449.13) -573 ENSMUSG00000084911.1 ENSMUSG00000084911 ENSMUST00000125071 Gm16185 antisense Interval_56501 chr14 119260385 119261079 + 0 NA intron (ENSMUSG00000053465.6, intron 1 of 1) protein_coding-intron (ENSMUSG00000053465.6, intron 1 of 1) -17692 ENSMUSG00000115684.1 ENSMUSG00000115684 ENSMUST00000227446 Gm6087 processed_pseudogene Interval_127893 chr5 108668709 108670043 + 0 NA promoter-TSS (ENSMUSG00000033540.18) protein_coding-promoter-TSS (ENSMUSG00000033540.18) -83 ENSMUSG00000033540.18 ENSMUSG00000033540 ENSMUST00000133482 Idua protein_coding Interval_116858 chr4 117764812 117766318 + 0 NA promoter-TSS (ENSMUSG00000048626.5) protein_coding-promoter-TSS (ENSMUSG00000048626.5) 83 ENSMUSG00000048626.5 ENSMUSG00000048626 ENSMUST00000062747 Klf17 protein_coding Interval_66200 chr16 32284011 32284422 + 0 NA intron (ENSMUSG00000014074.17, intron 2 of 5) protein_coding-intron (ENSMUSG00000014074.17, intron 2 of 5) 6755 ENSMUSG00000014074.17 ENSMUSG00000014074 ENSMUST00000171474 Rnf168 protein_coding Interval_162058 chr8 124792346 124794910 + 0 NA exon (ENSMUSG00000036913.15, exon 1 of 11) protein_coding-exon (ENSMUSG00000036913.15, exon 1 of 11) 536 ENSMUSG00000036913.15 ENSMUSG00000036913 ENSMUST00000211867 Trim67 protein_coding Interval_135677 chr6 43246417 43246621 + 0 NA Intergenic Intergenic 14990 ENSMUSG00000061210.4 ENSMUSG00000061210 ENSMUST00000078057 Olfr47 protein_coding Interval_53339 chr14 56401506 56403370 + 0 NA promoter-TSS (ENSMUSG00000000365.9) protein_coding-promoter-TSS (ENSMUSG00000000365.9) -10876 ENSMUSG00000114345.1 ENSMUSG00000114345 ENSMUST00000225567 Gm10873 antisense Interval_107197 chr3 104517179 104517695 + 0 NA Intergenic Intergenic -6124 ENSMUSG00000105659.1 ENSMUSG00000105659 ENSMUST00000196088 4930509H03Rik sense_intronic Interval_121707 chr5 5531099 5531455 + 0 NA Intergenic Intergenic -16365 ENSMUSG00000046798.14 ENSMUSG00000046798 ENSMUST00000134157 Cldn12 protein_coding Interval_130797 chr5 130655081 130655658 + 0 NA intron (ENSMUSG00000060371.12, intron 3 of 5) protein_coding-intron (ENSMUSG00000060371.12, intron 4 of 6) -36818 ENSMUSG00000106849.1 ENSMUSG00000106849 ENSMUST00000201334 Gm43418 TEC Interval_59720 chr15 58902404 58903227 + 0 NA TTS (ENSMUSG00000037075.7) protein_coding-TTS (ENSMUSG00000037075.7) 2678 ENSMUSG00000037075.7 ENSMUSG00000037075 ENSMUST00000226908 Rnf139 protein_coding Interval_55194 chr14 79251651 79251970 + 0 NA Intergenic Intergenic -4441 ENSMUSG00000071262.10 ENSMUSG00000071262 ENSMUST00000162937 Zfp957 protein_coding Interval_150388 chr7 110083572 110084334 + 0 NA intron (ENSMUSG00000061079.14, intron 11 of 15) protein_coding-intron (ENSMUSG00000061079.14, intron 11 of 15) 22243 ENSMUSG00000061079.14 ENSMUSG00000061079 ENSMUST00000209252 Zfp143 protein_coding Interval_135662 chr6 42644897 42645634 + 0 NA promoter-TSS (ENSMUSG00000029851.5) protein_coding-promoter-TSS (ENSMUSG00000029851.5) -15825 ENSMUSG00000029851.5 ENSMUSG00000029851 ENSMUST00000131341 Tcaf2 protein_coding Interval_157328 chr8 69344650 69345544 + 0 NA Intergenic Intergenic 15879 ENSMUSG00000110514.1 ENSMUSG00000110514 ENSMUST00000212857 Gm7688 processed_pseudogene Interval_20857 chr10 121541838 121543112 + 0 NA Intergenic Intergenic -10099 ENSMUSG00000118419.1 ENSMUSG00000118419 ENSMUST00000238643 Gm50454 unprocessed_pseudogene Interval_110146 chr3 153717676 153718932 + 0 NA intron (ENSMUSG00000052544.9, intron 1 of 4) protein_coding-intron (ENSMUSG00000052544.9, intron 1 of 2) 9393 ENSMUSG00000089237.1 ENSMUSG00000089237 ENSMUST00000158612 Gm22206 snoRNA Interval_142520 chr6 143060150 143060508 + 0 NA intron (ENSMUSG00000030279.15, intron 3 of 6) protein_coding-intron (ENSMUSG00000030279.15, intron 10 of 24) 39761 ENSMUSG00000030279.15 ENSMUSG00000030279 ENSMUST00000205079 C2cd5 protein_coding Interval_105220 chr3 83958933 83959530 + 0 NA intron (ENSMUSG00000033767.14, intron 4 of 21) protein_coding-intron (ENSMUSG00000033767.14, intron 7 of 33) -51652 ENSMUSG00000033767.14 ENSMUSG00000033767 ENSMUST00000192811 Tmem131l protein_coding Interval_21716 chr11 3894537 3895603 + 0 NA promoter-TSS (ENSMUSG00000020434.4) protein_coding-promoter-TSS (ENSMUSG00000020434.4) 28 ENSMUSG00000020434.4 ENSMUSG00000020434 ENSMUST00000020712 4921536K21Rik protein_coding Interval_35249 chr12 18937420 18937607 + 0 NA Intergenic Intergenic 19085 ENSMUSG00000116744.1 ENSMUSG00000116744 ENSMUST00000231428 Gm49764 lincRNA Interval_3448 chr1 58423074 58425291 + 0 NA promoter-TSS (ENSMUSG00000026034.17) protein_coding-promoter-TSS (ENSMUSG00000026034.17) -3784 ENSMUSG00000026034.17 ENSMUSG00000026034 ENSMUST00000147258 Clk1 protein_coding Interval_35261 chr12 19174947 19176950 + 0 NA promoter-TSS (ENSMUSG00000113205.1) processed_pseudogene-promoter-TSS (ENSMUSG00000113205.1) -155 ENSMUSG00000113205.1 ENSMUSG00000113205 ENSMUST00000222931 Gm48525 processed_pseudogene Interval_52240 chr14 40955728 40957054 + 0 NA intron (ENSMUSG00000037824.6, intron 1 of 8) protein_coding-intron (ENSMUSG00000037824.6, intron 1 of 8) -22075 ENSMUSG00000037824.6 ENSMUSG00000037824 ENSMUST00000224349 Tspan14 protein_coding Interval_27502 chr11 68274657 68275059 + 0 NA intron (ENSMUSG00000020902.12, intron 4 of 7) protein_coding-intron (ENSMUSG00000020902.12, intron 3 of 6) -3979 ENSMUSG00000084993.1 ENSMUSG00000084993 ENSMUST00000151817 Gm12305 sense_intronic Interval_121268 chr4 154538930 154539210 + 0 NA intron (ENSMUSG00000039410.16, intron 1 of 2) protein_coding-intron (ENSMUSG00000039410.16, intron 1 of 16) -11212 ENSMUSG00000086565.1 ENSMUSG00000086565 ENSMUST00000143888 Gm13133 antisense Interval_138651 chr6 90764011 90765479 + 0 NA promoter-TSS (ENSMUSG00000034312.15) protein_coding-promoter-TSS (ENSMUSG00000034312.15) 17336 ENSMUSG00000034312.15 ENSMUSG00000034312 ENSMUST00000238855 Iqsec1 protein_coding Interval_171433 chr9 118311253 118311468 + 0 NA Intergenic Intergenic 23574 ENSMUSG00000084608.1 ENSMUSG00000084608 ENSMUST00000122659 Gm22198 misc_RNA Interval_41077 chr12 111035372 111035665 + 0 NA Intergenic Intergenic -4280 ENSMUSG00000037896.17 ENSMUSG00000037896 ENSMUST00000116388 Rcor1 protein_coding Interval_2341 chr1 38200045 38200309 + 0 NA intron (ENSMUSG00000037138.18, intron 16 of 22) protein_coding-intron (ENSMUSG00000037138.18, intron 16 of 22) -39523 ENSMUSG00000085391.1 ENSMUSG00000085391 ENSMUST00000133299 Gm16150 antisense Interval_105529 chr3 87365426 87365799 + 0 NA intron (ENSMUSG00000015854.7, intron 2 of 5) protein_coding-intron (ENSMUSG00000015854.7, intron 2 of 5) 7731 ENSMUSG00000015854.7 ENSMUSG00000015854 ENSMUST00000015998 Cd5l protein_coding Interval_133864 chr6 13677124 13678625 + 0 NA promoter-TSS (ENSMUSG00000042742.7) protein_coding-promoter-TSS (ENSMUSG00000042742.7) 64 ENSMUSG00000042742.7 ENSMUSG00000042742 ENSMUST00000203078 Bmt2 protein_coding Interval_132781 chr5 147834828 147835715 + 0 NA Intergenic Intergenic 13026 ENSMUSG00000107065.1 ENSMUSG00000107065 ENSMUST00000202661 Gm43155 processed_pseudogene Interval_13235 chr10 13412433 13412805 + 0 NA intron (ENSMUSG00000062866.16, intron 1 of 12) protein_coding-intron (ENSMUSG00000062866.16, intron 1 of 12) -23888 ENSMUSG00000062866.16 ENSMUSG00000062866 ENSMUST00000154265 Phactr2 protein_coding Interval_137535 chr6 72940313 72941264 + 0 NA Intergenic Intergenic -12448 ENSMUSG00000097569.2 ENSMUSG00000097569 ENSMUST00000180809 Gm26640 lincRNA Interval_137111 chr6 67523391 67524002 + 0 NA Intergenic Intergenic -8793 ENSMUSG00000105650.1 ENSMUSG00000105650 ENSMUST00000199480 Gm42889 lincRNA Interval_68201 chr16 67934200 67934475 + 0 NA Intergenic Intergenic 73024 ENSMUSG00000116666.1 ENSMUSG00000116666 ENSMUST00000232463 Gm49649 processed_pseudogene Interval_86327 chr19 38785565 38785762 + 0 NA TTS (ENSMUSG00000024998.17) protein_coding-TTS (ENSMUSG00000024998.17) -33018 ENSMUSG00000101079.1 ENSMUSG00000101079 ENSMUST00000186584 Gm28991 antisense Interval_151701 chr7 126150527 126150776 + 0 NA intron (ENSMUSG00000000131.15, intron 3 of 4) protein_coding-intron (ENSMUSG00000000131.15, intron 7 of 23) -14994 ENSMUSG00000090559.1 ENSMUSG00000090559 ENSMUST00000165729 Gm17137 transcribed_processed_pseudogene Interval_7841 chr1 134078476 134079835 + 0 NA promoter-TSS (ENSMUSG00000020423.6) protein_coding-promoter-TSS (ENSMUSG00000020423.6) -35 ENSMUSG00000020423.6 ENSMUSG00000020423 ENSMUST00000020692 Btg2 protein_coding Interval_110214 chr3 154377666 154378026 + 0 NA Intergenic Intergenic 45849 ENSMUSG00000093738.2 ENSMUSG00000093738 ENSMUST00000181234 AI606473 processed_transcript Interval_43176 chr13 24862498 24863160 + 0 NA intron (ENSMUSG00000006711.15, intron 5 of 19) protein_coding-intron (ENSMUSG00000006711.15, intron 5 of 20) -30252 ENSMUSG00000006711.15 ENSMUSG00000006711 ENSMUST00000171262 D130043K22Rik protein_coding Interval_130791 chr5 130536026 130536318 + 0 NA intron (ENSMUSG00000060371.12, intron 2 of 2) protein_coding-intron (ENSMUSG00000060371.12, intron 3 of 6) 82379 ENSMUSG00000106849.1 ENSMUSG00000106849 ENSMUST00000201334 Gm43418 TEC Interval_45602 chr13 56191140 56191972 + 0 NA Intergenic Intergenic 11381 ENSMUSG00000114341.1 ENSMUSG00000114341 ENSMUST00000225940 Gm47104 processed_pseudogene Interval_138773 chr6 91742204 91742410 + 0 NA intron (ENSMUSG00000030096.8, intron 9 of 14) protein_coding-intron (ENSMUSG00000030096.8, intron 9 of 14) -7877 ENSMUSG00000030096.8 ENSMUSG00000030096 ENSMUST00000206988 Slc6a6 protein_coding Interval_171332 chr9 116462054 116462882 + 0 NA Intergenic Intergenic 131300 ENSMUSG00000110752.1 ENSMUSG00000110752 ENSMUST00000217456 D730003K21Rik lincRNA Interval_76804 chr17 84183178 84183798 + 0 NA TTS (ENSMUSG00000045817.8) protein_coding-TTS (ENSMUSG00000045817.8) -2268 ENSMUSG00000117393.1 ENSMUSG00000117393 ENSMUST00000234321 Gm36279 antisense Interval_15272 chr10 43992815 43993764 + 0 NA intron (ENSMUSG00000019866.15, intron 4 of 21) protein_coding-intron (ENSMUSG00000019866.15, intron 2 of 19) -10865 ENSMUSG00000075162.3 ENSMUSG00000075162 ENSMUST00000099864 Gm10812 pseudogene Interval_101784 chr3 9546509 9547524 + 0 NA intron (ENSMUSG00000040209.12, intron 1 of 9) protein_coding-intron (ENSMUSG00000040209.12, intron 2 of 8) 18283 ENSMUSG00000040209.12 ENSMUSG00000040209 ENSMUST00000192832 Zfp704 protein_coding Interval_49018 chr13 106946411 106947729 + 0 NA promoter-TSS (ENSMUSG00000021692.9) protein_coding-promoter-TSS (ENSMUSG00000021692.9) -85 ENSMUSG00000021692.9 ENSMUSG00000021692 ENSMUST00000223870 Dimt1 protein_coding Interval_103091 chr3 35173384 35174042 + 0 NA Intergenic Intergenic 102418 ENSMUSG00000105651.1 ENSMUSG00000105651 ENSMUST00000198307 1700017M07Rik lincRNA Interval_81766 chr18 64504428 64504661 + 0 NA TTS (ENSMUSG00000024587.10) protein_coding-TTS (ENSMUSG00000024587.10) 7333 ENSMUSG00000024587.10 ENSMUSG00000024587 ENSMUST00000237027 Nars protein_coding Interval_146266 chr7 45052813 45054754 + 0 NA promoter-TSS (ENSMUSG00000046574.8) protein_coding-promoter-TSS (ENSMUSG00000046574.8) 7923 ENSMUSG00000007837.11 ENSMUSG00000007837 ENSMUST00000209219 Prrg2 protein_coding Interval_14394 chr10 32708088 32708321 + 0 NA intron (ENSMUSG00000069670.8, intron 1 of 1) protein_coding-intron (ENSMUSG00000069670.8, intron 1 of 6) -68718 ENSMUSG00000112914.1 ENSMUSG00000112914 ENSMUST00000220196 Gm47702 TEC Interval_55063 chr14 77618290 77619159 + 0 NA intron (ENSMUSG00000022012.9, intron 9 of 13) protein_coding-intron (ENSMUSG00000022012.9, intron 13 of 18) 15136 ENSMUSG00000115363.1 ENSMUSG00000115363 ENSMUST00000227098 Gm49003 antisense Interval_54634 chr14 72525995 72526879 + 0 NA Intergenic Intergenic 6212 ENSMUSG00000108975.1 ENSMUSG00000108975 ENSMUST00000208959 Mlnr-ps unitary_pseudogene Interval_45050 chr13 51737674 51739504 + 0 NA intron (ENSMUSG00000021451.16, intron 2 of 16) protein_coding-intron (ENSMUSG00000021451.16, intron 2 of 15) -26705 ENSMUSG00000092648.1 ENSMUSG00000092648 ENSMUST00000174907 Gm23566 miRNA Interval_159385 chr8 94214274 94215359 + 0 NA intron (ENSMUSG00000032939.14, intron 1 of 2) protein_coding-intron (ENSMUSG00000032939.14, intron 1 of 21) -8177 ENSMUSG00000110679.1 ENSMUSG00000110679 ENSMUST00000212707 Rpl10-ps5 processed_pseudogene Interval_19606 chr10 105544298 105544857 + 0 NA intron (ENSMUSG00000036019.8, intron 1 of 8) protein_coding-intron (ENSMUSG00000036019.8, intron 1 of 11) -10084 ENSMUSG00000112571.1 ENSMUSG00000112571 ENSMUST00000217855 Gm48207 TEC Interval_44147 chr13 41231605 41232915 + 0 NA Intergenic Intergenic 2817 ENSMUSG00000114238.1 ENSMUSG00000114238 ENSMUST00000224932 Rps17-ps1 processed_pseudogene Interval_75101 chr17 63422297 63424260 + 0 NA intron (ENSMUSG00000023965.13, intron 1 of 6) protein_coding-intron (ENSMUSG00000023965.13, intron 4 of 8) 28433 ENSMUSG00000023965.13 ENSMUSG00000023965 ENSMUST00000090318 Fbxl17 protein_coding Interval_71859 chr17 26577908 26578120 + 0 NA intron (ENSMUSG00000001576.15, intron 1 of 9) protein_coding-intron (ENSMUSG00000001576.15, intron 1 of 8) 2913 ENSMUSG00000094969.1 ENSMUSG00000094969 ENSMUST00000178795 Gm22420 miRNA Interval_60643 chr15 75882527 75883154 + 0 NA Intergenic Intergenic 5930 ENSMUSG00000098678.1 ENSMUSG00000098678 ENSMUST00000184858 Mroh6 protein_coding Interval_146938 chr7 56037342 56038313 + 0 NA Intergenic Intergenic 12112 ENSMUSG00000108659.1 ENSMUSG00000108659 ENSMUST00000206544 Gm34121 processed_transcript Interval_52454 chr14 46601733 46602165 + 0 NA TTS (ENSMUSG00000115665.1) lincRNA-TTS (ENSMUSG00000115665.1) -5603 ENSMUSG00000115828.1 ENSMUSG00000115828 ENSMUST00000226841 Gm18761 processed_pseudogene Interval_122686 chr5 24651510 24653231 + 0 NA Intergenic Intergenic 6917 ENSMUSG00000038165.8 ENSMUSG00000038165 ENSMUST00000182745 1700022A21Rik transcribed_processed_pseudogene Interval_30041 chr11 88851281 88851753 + 0 NA promoter-TSS (ENSMUSG00000018428.15) protein_coding-promoter-TSS (ENSMUSG00000018428.15) -87 ENSMUSG00000092399.1 ENSMUSG00000092399 ENSMUST00000173677 4930556N13Rik antisense Interval_81764 chr18 64502737 64503082 + 0 NA promoter-TSS (ENSMUSG00000024587.10) protein_coding-promoter-TSS (ENSMUSG00000024587.10) 8968 ENSMUSG00000024587.10 ENSMUSG00000024587 ENSMUST00000237027 Nars protein_coding Interval_39633 chr12 91685574 91686651 + 0 NA promoter-TSS (ENSMUSG00000090722.8) sense_intronic-promoter-TSS (ENSMUSG00000090722.8) 1 ENSMUSG00000090722.8 ENSMUSG00000090722 ENSMUST00000167777 Gm8378 sense_intronic Interval_52297 chr14 44100258 44100490 + 0 NA intron (ENSMUSG00000115794.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000115794.1, intron 1 of 1) -2280 ENSMUSG00000072596.4 ENSMUSG00000072596 ENSMUST00000074839 Ear2 protein_coding Interval_12756 chr10 4900113 4901269 + 0 NA intron (ENSMUSG00000019768.16, intron 6 of 9) protein_coding-intron (ENSMUSG00000019768.16, intron 5 of 8) 135765 ENSMUSG00000093189.1 ENSMUSG00000093189 ENSMUST00000175448 Gm25694 ribozyme Interval_71994 chr17 27480316 27480954 + 0 NA intron (ENSMUSG00000063239.17, intron 1 of 8) protein_coding-intron (ENSMUSG00000063239.17, intron 2 of 10) -11746 ENSMUSG00000116568.1 ENSMUSG00000116568 ENSMUST00000231818 Gm49790 TEC Interval_29878 chr11 87482800 87483373 + 0 NA intron (ENSMUSG00000010342.16, intron 3 of 3) protein_coding-intron (ENSMUSG00000010342.16, intron 3 of 30) 11718 ENSMUSG00000105115.1 ENSMUSG00000105115 ENSMUST00000196353 Rnu3b2 snoRNA Interval_123267 chr5 31004063 31004648 + 0 NA Intergenic Intergenic 35693 ENSMUSG00000006642.3 ENSMUSG00000006642 ENSMUST00000006818 Tcf23 protein_coding Interval_126389 chr5 87842993 87843515 + 0 NA exon (ENSMUSG00000002240.12, exon 4 of 5) protein_coding-exon (ENSMUSG00000002240.12, exon 4 of 5) 164 ENSMUSG00000104839.1 ENSMUSG00000104839 ENSMUST00000197636 Gm42794 antisense Interval_15711 chr10 54058597 54059505 + 0 NA intron (ENSMUSG00000003746.16, intron 2 of 12) protein_coding-intron (ENSMUSG00000003746.16, intron 2 of 12) -4760 ENSMUSG00000112824.1 ENSMUSG00000112824 ENSMUST00000219148 Gm47917 antisense Interval_9929 chr1 164178606 164178858 + 0 NA intron (ENSMUSG00000026579.8, intron 5 of 24) protein_coding-intron (ENSMUSG00000026579.8, intron 5 of 24) 12153 ENSMUSG00000089790.1 ENSMUSG00000089790 ENSMUST00000162889 Gm16588 processed_pseudogene Interval_161035 chr8 117061643 117061878 + 0 NA intron (ENSMUSG00000034416.18, intron 9 of 42) protein_coding-intron (ENSMUSG00000034416.18, intron 9 of 42) 25263 ENSMUSG00000085688.1 ENSMUSG00000085688 ENSMUST00000153724 Gm15395 antisense Interval_122417 chr5 22416145 22416583 + 0 NA Intergenic Intergenic -11646 ENSMUSG00000105106.1 ENSMUSG00000105106 ENSMUST00000200336 Gm43657 lincRNA Interval_72137 chr17 28232324 28233243 + 0 NA promoter-TSS (ENSMUSG00000002250.16) protein_coding-promoter-TSS (ENSMUSG00000002250.16) 9 ENSMUSG00000002250.16 ENSMUSG00000002250 ENSMUST00000233383 Ppard protein_coding Interval_28062 chr11 72573956 72574288 + 0 NA promoter-TSS (ENSMUSG00000081675.1) processed_pseudogene-promoter-TSS (ENSMUSG00000081675.1) -792 ENSMUSG00000081675.1 ENSMUSG00000081675 ENSMUST00000120676 Gm12712 processed_pseudogene Interval_38491 chr12 79504174 79504394 + 0 NA intron (ENSMUSG00000059060.15, intron 1 of 2) protein_coding-intron (ENSMUSG00000059060.15, intron 7 of 7) 176931 ENSMUSG00000059060.15 ENSMUSG00000059060 ENSMUST00000221257 Rad51b protein_coding Interval_40372 chr12 104458655 104459862 + 0 NA Intergenic Intergenic 14072 ENSMUSG00000021095.5 ENSMUSG00000021095 ENSMUST00000021513 Gsc protein_coding Interval_84874 chr19 18531195 18531412 + 0 NA intron (ENSMUSG00000024725.13, intron 9 of 10) protein_coding-intron (ENSMUSG00000024725.13, intron 9 of 10) -50152 ENSMUSG00000080783.1 ENSMUSG00000080783 ENSMUST00000117398 Gm8250 processed_pseudogene Interval_20023 chr10 112138499 112139168 + 0 NA Intergenic Intergenic -6252 ENSMUSG00000112334.1 ENSMUSG00000112334 ENSMUST00000218586 Gm48047 processed_pseudogene Interval_7819 chr1 133896315 133896907 + 0 NA TTS (ENSMUSG00000010311.15) protein_coding-TTS (ENSMUSG00000010311.15) -9920 ENSMUSG00000090208.1 ENSMUSG00000090208 ENSMUST00000160564 Gm15851 antisense Interval_100161 chr2 167399100 167400195 + 0 NA Intergenic Intergenic -51408 ENSMUSG00000039463.14 ENSMUSG00000039463 ENSMUST00000148454 Slc9a8 protein_coding Interval_169671 chr9 100097134 100097394 + 0 NA Intergenic Intergenic 73616 ENSMUSG00000101584.2 ENSMUSG00000101584 ENSMUST00000215896 4930519F24Rik lincRNA Interval_142324 chr6 140642854 140643223 + 0 NA promoter-TSS (ENSMUSG00000030232.18) protein_coding-promoter-TSS (ENSMUSG00000030232.18) 6300 ENSMUSG00000030232.18 ENSMUSG00000030232 ENSMUST00000160772 Aebp2 protein_coding Interval_110109 chr3 153364502 153364691 + 0 NA intron (ENSMUSG00000052544.9, intron 3 of 4) protein_coding-intron (ENSMUSG00000052544.9, intron 2 of 2) 50883 ENSMUSG00000099114.1 ENSMUSG00000099114 ENSMUST00000184201 Gm27405 miRNA Interval_102179 chr3 19228657 19229304 + 0 NA intron (ENSMUSG00000069094.12, intron 1 of 1) protein_coding-intron (ENSMUSG00000069094.12, intron 12 of 12) 1200 ENSMUSG00000087108.1 ENSMUSG00000087108 ENSMUST00000141455 Gm16093 antisense Interval_32550 chr11 108454804 108455004 + 0 NA intron (ENSMUSG00000020728.17, intron 5 of 5) protein_coding-intron (ENSMUSG00000020728.17, intron 5 of 27) 31631 ENSMUSG00000082544.1 ENSMUSG00000082544 ENSMUST00000119828 Gm11667 processed_pseudogene Interval_57083 chr15 5895167 5896419 + 0 NA Intergenic Intergenic 29558 ENSMUSG00000115106.1 ENSMUSG00000115106 ENSMUST00000228443 Gm8043 processed_pseudogene Interval_129064 chr5 117165147 117165391 + 0 NA intron (ENSMUSG00000061288.13, intron 1 of 12) protein_coding-intron (ENSMUSG00000061288.13, intron 1 of 19) -31286 ENSMUSG00000084587.1 ENSMUSG00000084587 ENSMUST00000122638 n-R5s174 rRNA Interval_72276 chr17 28930291 28932210 + 0 NA intron (ENSMUSG00000087693.1, intron 1 of 2) antisense-intron (ENSMUSG00000087693.1, intron 1 of 2) 5787 ENSMUSG00000087693.1 ENSMUSG00000087693 ENSMUST00000141445 Gm16191 antisense Interval_51370 chr14 27062040 27062709 + 0 NA intron (ENSMUSG00000040717.6, intron 1 of 12) protein_coding-intron (ENSMUSG00000040717.6, intron 1 of 12) -5023 ENSMUSG00000040717.6 ENSMUSG00000040717 ENSMUST00000225829 Il17rd protein_coding Interval_64051 chr16 6502202 6502730 + 0 NA intron (ENSMUSG00000008658.16, intron 3 of 11) protein_coding-intron (ENSMUSG00000008658.16, intron 2 of 14) 526881 ENSMUSG00000101481.1 ENSMUSG00000101481 ENSMUST00000190515 1700123O21Rik sense_intronic Interval_5577 chr1 89930103 89931604 + 0 NA exon (ENSMUSG00000034486.8, exon 1 of 2) protein_coding-exon (ENSMUSG00000034486.8, exon 1 of 2) 592 ENSMUSG00000092627.2 ENSMUSG00000092627 ENSMUST00000189763 D130058E05Rik processed_transcript Interval_34899 chr12 13122317 13122627 + 0 NA Intergenic Intergenic -3304 ENSMUSG00000113284.1 ENSMUSG00000113284 ENSMUST00000222856 Gm48213 lincRNA Interval_102019 chr3 15098413 15099734 + 0 NA Intergenic Intergenic 72369 ENSMUSG00000103912.1 ENSMUSG00000103912 ENSMUST00000194008 Gm33819 lincRNA Interval_96396 chr2 122172588 122173261 + 0 NA intron (ENSMUSG00000033368.8, intron 4 of 7) protein_coding-intron (ENSMUSG00000027233.4, intron 2 of 17) 12122 ENSMUSG00000033368.8 ENSMUSG00000033368 ENSMUST00000143088 Trim69 protein_coding Interval_4984 chr1 83535202 83536052 + 0 NA Intergenic Intergenic -108229 ENSMUSG00000104219.1 ENSMUSG00000104219 ENSMUST00000195202 Gm37989 TEC Interval_52179 chr14 38320816 38321235 + 0 NA intron (ENSMUSG00000114219.1, intron 1 of 3) lincRNA-intron (ENSMUSG00000114219.1, intron 1 of 3) 3121 ENSMUSG00000114219.1 ENSMUSG00000114219 ENSMUST00000225614 Gm31456 lincRNA Interval_61467 chr15 81796284 81796545 + 0 NA TTS (ENSMUSG00000022390.11) protein_coding-TTS (ENSMUSG00000022390.11) 6199 ENSMUSG00000097613.1 ENSMUSG00000097613 ENSMUST00000181220 Gm17597 antisense Interval_56167 chr14 109770510 109770713 + 0 NA Intergenic Intergenic 112572 ENSMUSG00000089119.1 ENSMUSG00000089119 ENSMUST00000158494 Gm25901 snoRNA Interval_97025 chr2 130628116 130630120 + 0 NA intron (ENSMUSG00000027300.10, intron 1 of 4) protein_coding-intron (ENSMUSG00000027300.10, intron 1 of 5) 909 ENSMUSG00000027300.10 ENSMUSG00000027300 ENSMUST00000140581 Ubox5 protein_coding Interval_151450 chr7 122600597 122601158 + 0 NA intron (ENSMUSG00000052889.11, intron 16 of 16) protein_coding-intron (ENSMUSG00000052889.11, intron 16 of 16) 9942 ENSMUSG00000108341.1 ENSMUSG00000108341 ENSMUST00000205565 Gm44746 TEC Interval_119817 chr4 140177011 140177586 + 0 NA intron (ENSMUSG00000040972.8, intron 1 of 9) protein_coding-intron (ENSMUSG00000040972.8, intron 1 of 9) 34425 ENSMUSG00000086164.1 ENSMUSG00000086164 ENSMUST00000137283 Gm13029 antisense Interval_84524 chr19 12198633 12199751 + 0 NA Intergenic Intergenic -1613 ENSMUSG00000094133.2 ENSMUSG00000094133 ENSMUST00000072316 Olfr1431 protein_coding Interval_71835 chr17 26421008 26422309 + 0 NA intron (ENSMUSG00000034413.14, intron 1 of 3) protein_coding-intron (ENSMUSG00000034413.14, intron 1 of 4) 6829 ENSMUSG00000034413.14 ENSMUSG00000034413 ENSMUST00000053020 Neurl1b protein_coding Interval_22 GL456211.1 103987 105940 + 0 NA NA NA NA NA Interval_141648 chr6 131856421 131857306 + 0 NA Intergenic Intergenic -23805 ENSMUSG00000107983.1 ENSMUSG00000107983 ENSMUST00000203562 Gm43973 processed_pseudogene Interval_170658 chr9 109939234 109940435 + 0 NA intron (ENSMUSG00000032479.15, intron 1 of 3) protein_coding-intron (ENSMUSG00000032479.15, intron 1 of 18) -15084 ENSMUSG00000105191.1 ENSMUSG00000105191 ENSMUST00000197587 Gm4644 processed_pseudogene Interval_141573 chr6 129476280 129477098 + 0 NA Intergenic Intergenic -3917 ENSMUSG00000079293.11 ENSMUSG00000079293 ENSMUST00000184861 Clec7a polymorphic_pseudogene Interval_103440 chr3 41585129 41585911 + 0 NA intron (ENSMUSG00000025764.14, intron 2 of 5) protein_coding-intron (ENSMUSG00000025764.14, intron 2 of 10) -21822 ENSMUSG00000103843.1 ENSMUSG00000103843 ENSMUST00000192060 Gm31266 antisense Interval_41180 chr12 111660422 111662165 + 0 NA Intergenic Intergenic 10251 ENSMUSG00000001270.9 ENSMUSG00000001270 ENSMUST00000222513 Ckb protein_coding Interval_119643 chr4 138943652 138944595 + 0 NA Intergenic Intergenic -22989 ENSMUSG00000070661.7 ENSMUSG00000070661 ENSMUST00000239443 Rnf186 protein_coding Interval_59924 chr15 62003888 62004080 + 0 NA Intergenic Intergenic 18062 ENSMUSG00000022346.16 ENSMUSG00000022346 ENSMUST00000160009 Myc protein_coding Interval_142000 chr6 136474979 136475757 + 0 NA Intergenic Intergenic 11818 ENSMUSG00000091408.3 ENSMUSG00000091408 ENSMUST00000178117 Gm6728 processed_pseudogene Interval_108836 chr3 132299826 132300150 + 0 NA Intergenic Intergenic 145560 ENSMUSG00000106280.1 ENSMUSG00000106280 ENSMUST00000198028 Gm42880 lincRNA Interval_129740 chr5 122060562 122061441 + 0 NA Intergenic Intergenic 12619 ENSMUSG00000087386.1 ENSMUSG00000087386 ENSMUST00000135544 Gm15637 antisense Interval_104691 chr3 69481550 69482091 + 0 NA intron (ENSMUSG00000027784.10, intron 1 of 3) protein_coding-intron (ENSMUSG00000027784.10, intron 1 of 3) -15393 ENSMUSG00000027784.10 ENSMUSG00000027784 ENSMUST00000128637 Ppm1l protein_coding Interval_78526 chr18 14336167 14336411 + 0 NA Intergenic Intergenic 4428 ENSMUSG00000117605.1 ENSMUSG00000117605 ENSMUST00000235083 Gm50097 lincRNA Interval_165940 chr9 54833794 54834234 + 0 NA Intergenic Intergenic -8732 ENSMUSG00000111686.1 ENSMUSG00000111686 ENSMUST00000213253 Rab7-ps1 processed_pseudogene Interval_67551 chr16 50732167 50733078 + 0 NA promoter-TSS (ENSMUSG00000022639.14) lincRNA-promoter-TSS (ENSMUSG00000022639.14) 61 ENSMUSG00000022639.14 ENSMUSG00000022639 ENSMUST00000169791 Dubr lincRNA Interval_76444 chr17 80237505 80238096 + 0 NA TTS (ENSMUSG00000035051.15) protein_coding-TTS (ENSMUSG00000035051.15) -9302 ENSMUSG00000117440.1 ENSMUSG00000117440 ENSMUST00000234217 Gm50087 antisense Interval_115766 chr4 103557308 103557540 + 0 NA Intergenic Intergenic -5978 ENSMUSG00000059195.10 ENSMUSG00000059195 ENSMUST00000121430 Gm12715 processed_pseudogene Interval_5482 chr1 89151254 89151451 + 0 NA intron (ENSMUSG00000036206.12, intron 4 of 5) protein_coding-intron (ENSMUSG00000036206.12, intron 4 of 5) 54279 ENSMUSG00000102700.1 ENSMUSG00000102700 ENSMUST00000195426 Gm38312 TEC Interval_113165 chr4 48781250 48781456 + 0 NA Intergenic Intergenic -18391 ENSMUSG00000093240.1 ENSMUSG00000093240 ENSMUST00000175499 Gm24573 rRNA Interval_7573 chr1 132277153 132277426 + 0 NA intron (ENSMUSG00000101549.1, intron 2 of 3) lincRNA-intron (ENSMUSG00000101549.1, intron 2 of 3) 3122 ENSMUSG00000101549.1 ENSMUSG00000101549 ENSMUST00000185761 Gm29630 lincRNA Interval_116380 chr4 110717459 110718415 + 0 NA intron (ENSMUSG00000061298.14, intron 3 of 12) protein_coding-intron (ENSMUSG00000061298.14, intron 3 of 12) -204205 ENSMUSG00000082348.1 ENSMUSG00000082348 ENSMUST00000121546 Gm12807 processed_pseudogene Interval_134556 chr6 29526284 29528382 + 0 NA promoter-TSS (ENSMUSG00000029771.12) protein_coding-promoter-TSS (ENSMUSG00000029771.12) -13813 ENSMUSG00000029771.12 ENSMUSG00000029771 ENSMUST00000171527 Irf5 protein_coding Interval_42816 chr13 19994803 19995054 + 0 NA TTS (ENSMUSG00000050243.6) processed_pseudogene-TTS (ENSMUSG00000050243.6) 876 ENSMUSG00000050243.6 ENSMUSG00000050243 ENSMUST00000091762 Gm5446 processed_pseudogene Interval_9125 chr1 153846878 153847320 + 0 NA Intergenic Intergenic -2957 ENSMUSG00000042641.19 ENSMUSG00000042641 ENSMUST00000206321 Rgsl1 protein_coding Interval_53731 chr14 61276485 61277750 + 0 NA Intergenic Intergenic 7671 ENSMUSG00000114920.1 ENSMUSG00000114920 ENSMUST00000225947 Gm19097 processed_pseudogene Interval_87367 chr19 47968305 47968528 + 0 NA intron (ENSMUSG00000046585.9, intron 9 of 17) protein_coding-intron (ENSMUSG00000046585.9, intron 9 of 17) 30741 ENSMUSG00000046585.9 ENSMUSG00000046585 ENSMUST00000066308 Cfap58 protein_coding Interval_120557 chr4 149360831 149361364 + 0 NA intron (ENSMUSG00000028960.20, intron 14 of 29) protein_coding-intron (ENSMUSG00000028960.20, intron 11 of 26) 13212 ENSMUSG00000085819.7 ENSMUSG00000085819 ENSMUST00000141259 Ube4bos1 antisense Interval_38457 chr12 79166570 79166898 + 0 NA promoter-TSS (ENSMUSG00000021124.13) protein_coding-promoter-TSS (ENSMUSG00000021124.13) -366 ENSMUSG00000021124.13 ENSMUSG00000021124 ENSMUST00000163031 Vti1b protein_coding Interval_40780 chr12 108320221 108321255 + 0 NA intron (ENSMUSG00000021260.8, intron 6 of 7) protein_coding-intron (ENSMUSG00000021260.8, intron 6 of 8) 7292 ENSMUSG00000097847.1 ENSMUSG00000097847 ENSMUST00000181875 4930478K11Rik antisense Interval_107368 chr3 106880320 106880586 + 0 NA Intergenic Intergenic -1092 ENSMUSG00000105102.1 ENSMUSG00000105102 ENSMUST00000197932 Gm35507 lincRNA Interval_48317 chr13 98077200 98077469 + 0 NA intron (ENSMUSG00000021662.11, intron 2 of 34) protein_coding-intron (ENSMUSG00000021662.11, intron 2 of 35) -60917 ENSMUSG00000021662.11 ENSMUSG00000021662 ENSMUST00000224866 Arhgef28 protein_coding Interval_111931 chr4 32637080 32637728 + 0 NA intron (ENSMUSG00000028282.12, intron 5 of 7) protein_coding-intron (ENSMUSG00000028282.12, intron 6 of 10) 18684 ENSMUSG00000081592.1 ENSMUSG00000081592 ENSMUST00000118323 Gm11936 processed_pseudogene Interval_125860 chr5 75111920 75112172 + 0 NA intron (ENSMUSG00000107192.1, intron 1 of 3) lincRNA-intron (ENSMUSG00000107192.1, intron 1 of 3) 1725 ENSMUSG00000107192.1 ENSMUSG00000107192 ENSMUST00000202993 Gm19583 lincRNA Interval_48864 chr13 104144878 104145687 + 0 NA intron (ENSMUSG00000021711.17, intron 11 of 12) protein_coding-intron (ENSMUSG00000021711.17, intron 11 of 12) 33125 ENSMUSG00000021711.17 ENSMUSG00000021711 ENSMUST00000142745 Trappc13 protein_coding Interval_3612 chr1 59999425 60001139 + 0 NA intron (ENSMUSG00000026018.12, intron 9 of 10) protein_coding-intron (ENSMUSG00000026018.12, intron 9 of 10) 21101 ENSMUSG00000041040.12 ENSMUSG00000041040 ENSMUST00000189790 Fam117b protein_coding Interval_145182 chr7 30495507 30495967 + 0 NA intron (ENSMUSG00000036892.12, intron 3 of 5) protein_coding-intron (ENSMUSG00000036892.12, intron 4 of 9) 2078 ENSMUSG00000036892.12 ENSMUSG00000036892 ENSMUST00000122876 Prodh2 protein_coding Interval_152114 chr7 129495279 129496180 + 0 NA Intergenic Intergenic -92639 ENSMUSG00000108713.1 ENSMUSG00000108713 ENSMUST00000206093 Gm33027 lincRNA Interval_76896 chr17 84814524 84814822 + 0 NA Intergenic Intergenic 25623 ENSMUSG00000117595.1 ENSMUSG00000117595 ENSMUST00000235108 Gm49981 lincRNA Interval_3558 chr1 59574724 59575036 + 0 NA intron (ENSMUSG00000047361.16, intron 11 of 19) protein_coding-intron (ENSMUSG00000047361.16, intron 11 of 19) -7516 ENSMUSG00000047361.16 ENSMUSG00000047361 ENSMUST00000190490 Gm973 protein_coding Interval_69839 chr16 97325991 97326360 + 0 NA Intergenic Intergenic -79094 ENSMUSG00000116686.1 ENSMUSG00000116686 ENSMUST00000232315 Gm49681 processed_pseudogene Interval_21322 chr10 127954028 127956918 + 0 NA Intergenic Intergenic -2298 ENSMUSG00000088687.1 ENSMUSG00000088687 ENSMUST00000158062 Gm23996 snoRNA Interval_138533 chr6 88976718 88977217 + 0 NA intron (ENSMUSG00000055403.13, intron 1 of 2) lincRNA-intron (ENSMUSG00000055403.13, intron 1 of 2) 26284 ENSMUSG00000055403.13 ENSMUSG00000055403 ENSMUST00000153981 4933427D06Rik lincRNA Interval_166898 chr9 63797389 63797884 + 0 NA Intergenic Intergenic 4161 ENSMUSG00000111137.1 ENSMUSG00000111137 ENSMUST00000215986 Gm2553 processed_pseudogene Interval_144903 chr7 28846689 28848703 + 0 NA Intergenic Intergenic 13842 ENSMUSG00000053964.17 ENSMUSG00000053964 ENSMUST00000137468 Lgals4 protein_coding Interval_9570 chr1 159490127 159490379 + 0 NA Intergenic Intergenic -33588 ENSMUSG00000015829.13 ENSMUSG00000015829 ENSMUST00000192457 Tnr protein_coding Interval_86451 chr19 40637010 40637772 + 0 NA intron (ENSMUSG00000048120.16, intron 1 of 9) protein_coding-intron (ENSMUSG00000048120.16, intron 1 of 9) -6755 ENSMUSG00000117952.1 ENSMUSG00000117952 ENSMUST00000235613 Gm50132 sense_intronic Interval_57515 chr15 12017896 12018171 + 0 NA Intergenic Intergenic 13894 ENSMUSG00000107344.1 ENSMUSG00000107344 ENSMUST00000201323 Gm2559 processed_pseudogene Interval_169290 chr9 96185029 96185527 + 0 NA TTS (ENSMUSG00000041440.18) protein_coding-TTS (ENSMUSG00000041440.18) 14362 ENSMUSG00000041440.18 ENSMUSG00000041440 ENSMUST00000189249 Gk5 protein_coding Interval_21853 chr11 4756883 4757288 + 0 NA Intergenic Intergenic -10307 ENSMUSG00000009075.2 ENSMUSG00000009075 ENSMUST00000009219 Cabp7 protein_coding Interval_34457 chr12 4321553 4322691 + 0 NA intron (ENSMUSG00000020647.10, intron 4 of 18) protein_coding-intron (ENSMUSG00000020647.10, intron 7 of 22) 22378 ENSMUSG00000020647.10 ENSMUSG00000020647 ENSMUST00000219715 Ncoa1 protein_coding Interval_115816 chr4 104902758 104903082 + 0 NA Intergenic Intergenic -10604 ENSMUSG00000078612.9 ENSMUSG00000078612 ENSMUST00000106804 Fyb2 protein_coding Interval_84998 chr19 21129731 21130210 + 0 NA intron (ENSMUSG00000118086.1, intron 2 of 4) lincRNA-intron (ENSMUSG00000118086.1, intron 2 of 4) 25260 ENSMUSG00000118047.1 ENSMUSG00000118047 ENSMUST00000237768 4930554I06Rik lincRNA Interval_20982 chr10 122996618 122996869 + 0 NA intron (ENSMUSG00000034602.15, intron 22 of 22) protein_coding-intron (ENSMUSG00000034602.15, intron 33 of 33) -10912 ENSMUSG00000112237.1 ENSMUSG00000112237 ENSMUST00000218534 D630033A02Rik transcribed_processed_pseudogene Interval_68337 chr16 73441678 73442115 + 0 NA Intergenic Intergenic -18937 ENSMUSG00000064830.1 ENSMUSG00000064830 ENSMUST00000082896 Gm25699 snRNA Interval_109653 chr3 145743094 145743630 + 0 NA Intergenic Intergenic -4196 ENSMUSG00000105608.1 ENSMUSG00000105608 ENSMUST00000198263 Gm43408 processed_pseudogene Interval_3575 chr1 59676010 59676531 + 0 NA Intergenic Intergenic 3029 ENSMUSG00000101400.1 ENSMUSG00000101400 ENSMUST00000185710 Gm29596 processed_pseudogene Interval_71016 chr17 17213138 17213598 + 0 NA Intergenic Intergenic -48982 ENSMUSG00000116802.1 ENSMUSG00000116802 ENSMUST00000231376 Gm5165 lincRNA Interval_89967 chr2 26910088 26911769 + 0 NA promoter-TSS (ENSMUSG00000015776.12) protein_coding-promoter-TSS (ENSMUSG00000015776.12) -333 ENSMUSG00000065258.1 ENSMUSG00000065258 ENSMUST00000083324 Gm23969 snoRNA Interval_150491 chr7 111156512 111156997 + 0 NA Intergenic Intergenic -34070 ENSMUSG00000110424.1 ENSMUSG00000110424 ENSMUST00000210340 1700012D14Rik processed_transcript Interval_89225 chr2 18189598 18190086 + 0 NA intron (ENSMUSG00000026743.16, intron 14 of 22) protein_coding-intron (ENSMUSG00000026743.16, intron 14 of 22) -10400 ENSMUSG00000081619.1 ENSMUSG00000081619 ENSMUST00000118087 Gm13351 processed_pseudogene Interval_114434 chr4 76449253 76451263 + 0 NA promoter-TSS (ENSMUSG00000028399.18) protein_coding-promoter-TSS (ENSMUSG00000028399.18) -973 ENSMUSG00000110373.1 ENSMUSG00000110373 ENSMUST00000209960 Gm42303 antisense Interval_169224 chr9 95645527 95645935 + 0 NA intron (ENSMUSG00000086585.1, intron 1 of 3) protein_coding-intron (ENSMUSG00000015354.8, intron 2 of 8) 2740 ENSMUSG00000086585.1 ENSMUSG00000086585 ENSMUST00000126025 Gm16126 antisense Interval_78145 chr18 9316153 9317083 + 0 NA exon (ENSMUSG00000024286.8, exon 10 of 10) protein_coding-exon (ENSMUSG00000024286.8, exon 10 of 10) 11983 ENSMUSG00000117644.1 ENSMUSG00000117644 ENSMUST00000234891 Gm50053 processed_pseudogene Interval_131152 chr5 135457863 135458306 + 0 NA TTS (ENSMUSG00000039959.13) protein_coding-TTS (ENSMUSG00000039959.13) 7843 ENSMUSG00000039959.13 ENSMUSG00000039959 ENSMUST00000202044 Hip1 protein_coding Interval_33449 chr11 116603269 116604886 + 0 NA intron (ENSMUSG00000020806.15, intron 6 of 7) protein_coding-intron (ENSMUSG00000020806.15, intron 7 of 18) -1482 ENSMUSG00000020806.15 ENSMUSG00000020806 ENSMUST00000126819 Rhbdf2 protein_coding Interval_93898 chr2 78385082 78385634 + 0 NA Intergenic Intergenic 83666 ENSMUSG00000054510.5 ENSMUSG00000054510 ENSMUST00000166653 Gm14461 lincRNA Interval_162775 chr9 8928470 8928713 + 0 NA intron (ENSMUSG00000031870.16, intron 3 of 7) protein_coding-intron (ENSMUSG00000031870.16, intron 3 of 7) 28758 ENSMUSG00000031870.16 ENSMUSG00000031870 ENSMUST00000098986 Pgr protein_coding Interval_141336 chr6 127375123 127376335 + 0 NA Intergenic Intergenic -7250 ENSMUSG00000107243.1 ENSMUSG00000107243 ENSMUST00000202011 Gm43631 processed_pseudogene Interval_118659 chr4 133038007 133041026 + 0 NA promoter-TSS (ENSMUSG00000037692.14) protein_coding-promoter-TSS (ENSMUSG00000037692.14) 27678 ENSMUSG00000037692.14 ENSMUSG00000037692 ENSMUST00000148518 Ahdc1 protein_coding Interval_106838 chr3 101232539 101233070 + 0 NA promoter-TSS (ENSMUSG00000083546.1) processed_pseudogene-promoter-TSS (ENSMUSG00000083546.1) -656 ENSMUSG00000083546.1 ENSMUSG00000083546 ENSMUST00000120257 Tpt1-ps1 processed_pseudogene Interval_144071 chr7 19300562 19301410 + 0 NA promoter-TSS (ENSMUSG00000097266.1) lincRNA-promoter-TSS (ENSMUSG00000097266.1) -216 ENSMUSG00000097266.1 ENSMUSG00000097266 ENSMUST00000181066 Gm26802 lincRNA Interval_124258 chr5 43006251 43006724 + 0 NA Intergenic Intergenic 31749 ENSMUSG00000107193.1 ENSMUSG00000107193 ENSMUST00000200967 Gm43700 lincRNA Interval_8019 chr1 135233762 135235144 + 0 NA Intergenic Intergenic 2458 ENSMUSG00000079139.4 ENSMUSG00000079139 ENSMUST00000110798 Gm4204 processed_pseudogene Interval_103395 chr3 41181787 41182925 + 0 NA Intergenic Intergenic -9693 ENSMUSG00000105258.1 ENSMUSG00000105258 ENSMUST00000197878 Gm40038 lincRNA Interval_90706 chr2 32021127 32021369 + 0 NA intron (ENSMUSG00000001855.15, intron 24 of 35) protein_coding-intron (ENSMUSG00000001855.15, intron 24 of 35) -3904 ENSMUSG00000086192.1 ENSMUSG00000086192 ENSMUST00000141023 Gm13609 antisense Interval_173228 chrX 74452696 74452985 + 0 NA exon (ENSMUSG00000004221.16, exon 11 of 11) protein_coding-exon (ENSMUSG00000004221.16, exon 11 of 11) -23960 ENSMUSG00000031400.10 ENSMUSG00000031400 ENSMUST00000155963 G6pdx protein_coding Interval_6053 chr1 95168826 95169549 + 0 NA Intergenic Intergenic 87623 ENSMUSG00000099592.1 ENSMUSG00000099592 ENSMUST00000190584 Gm5264 processed_pseudogene Interval_135426 chr6 39319187 39320401 + 0 NA Intergenic Intergenic -53852 ENSMUSG00000089422.1 ENSMUSG00000089422 ENSMUST00000158797 Gm26008 snRNA Interval_51354 chr14 26969906 26970941 + 0 NA promoter-TSS (ENSMUSG00000040760.11) protein_coding-promoter-TSS (ENSMUSG00000040760.11) 82 ENSMUSG00000040760.11 ENSMUSG00000040760 ENSMUST00000142261 Appl1 protein_coding Interval_146198 chr7 44647442 44647973 + 0 NA intron (ENSMUSG00000030739.18, intron 1 of 25) protein_coding-intron (ENSMUSG00000030739.18, intron 10 of 41) 2279 ENSMUSG00000109352.1 ENSMUSG00000109352 ENSMUST00000209087 Gm18256 processed_pseudogene Interval_65101 chr16 19146246 19147229 + 0 NA Intergenic Intergenic 21309 ENSMUSG00000106444.1 ENSMUSG00000106444 ENSMUST00000198507 Gm18748 processed_pseudogene Interval_139470 chr6 100384633 100386134 + 0 NA Intergenic Intergenic -98635 ENSMUSG00000072872.3 ENSMUSG00000072872 ENSMUST00000205164 Rybp protein_coding Interval_59053 chr15 42629465 42629881 + 0 NA intron (ENSMUSG00000022309.9, intron 1 of 8) protein_coding-intron (ENSMUSG00000022309.9, intron 1 of 8) -46652 ENSMUSG00000097805.2 ENSMUSG00000097805 ENSMUST00000228544 Gm17473 antisense Interval_82756 chr18 76838036 76839141 + 0 NA Intergenic Intergenic -17817 ENSMUSG00000091519.1 ENSMUSG00000091519 ENSMUST00000166956 Skor2 protein_coding Interval_12479 chr1 193928241 193929270 + 0 NA Intergenic Intergenic 61746 ENSMUSG00000104182.1 ENSMUSG00000104182 ENSMUST00000194272 Gm21362 processed_pseudogene Interval_113183 chr4 49180167 49180337 + 0 NA intron (ENSMUSG00000063446.4, intron 1 of 3) protein_coding-intron (ENSMUSG00000063446.4, intron 1 of 7) -109046 ENSMUSG00000064782.1 ENSMUSG00000064782 ENSMUST00000082848 Gm22685 snRNA Interval_89630 chr2 23571416 23572355 + 0 NA promoter-TSS (ENSMUSG00000026771.14) protein_coding-promoter-TSS (ENSMUSG00000026771.14) -56662 ENSMUSG00000026771.14 ENSMUSG00000026771 ENSMUST00000123843 Spopl protein_coding Interval_148944 chr7 90233428 90234303 + 0 NA TTS (ENSMUSG00000030617.13) protein_coding-TTS (ENSMUSG00000030617.13) 31912 ENSMUSG00000030617.13 ENSMUSG00000030617 ENSMUST00000207819 Ccdc83 protein_coding Interval_150376 chr7 110008720 110009272 + 0 NA intron (ENSMUSG00000101585.6, intron 2 of 3) antisense-intron (ENSMUSG00000101585.6, intron 2 of 3) -2350 ENSMUSG00000101585.6 ENSMUSG00000101585 ENSMUST00000188824 1600010M07Rik antisense Interval_15049 chr10 42219620 42220024 + 0 NA intron (ENSMUSG00000048756.11, intron 2 of 2) protein_coding-intron (ENSMUSG00000048756.11, intron 2 of 3) 38544 ENSMUSG00000048756.11 ENSMUSG00000048756 ENSMUST00000105501 Foxo3 protein_coding Interval_1676 chr1 30963781 30964000 + 0 NA Intergenic Intergenic 14078 ENSMUSG00000117091.1 ENSMUSG00000117091 ENSMUST00000178317 Gm5698 protein_coding Interval_25129 chr11 44392766 44393584 + 0 NA Intergenic Intergenic -5901 ENSMUSG00000082790.1 ENSMUSG00000082790 ENSMUST00000121267 Gm12155 processed_pseudogene Interval_118734 chr4 133441923 133442638 + 0 NA Intergenic Intergenic 25974 ENSMUSG00000028854.9 ENSMUSG00000028854 ENSMUST00000141658 Slc9a1 protein_coding Interval_9166 chr1 154398173 154398549 + 0 NA TTS (ENSMUSG00000004110.17) protein_coding-TTS (ENSMUSG00000004110.17) -74753 ENSMUSG00000100031.1 ENSMUSG00000100031 ENSMUST00000185981 Gm18727 processed_pseudogene Interval_67609 chr16 52310966 52311536 + 0 NA intron (ENSMUSG00000022636.13, intron 1 of 14) protein_coding-intron (ENSMUSG00000022636.13, intron 1 of 15) 141214 ENSMUSG00000022636.13 ENSMUSG00000022636 ENSMUST00000168071 Alcam protein_coding Interval_32853 chr11 112067331 112067660 + 0 NA Intergenic Intergenic -23917 ENSMUSG00000081088.1 ENSMUSG00000081088 ENSMUST00000121830 Gm11679 processed_pseudogene Interval_144728 chr7 27811251 27811736 + 0 NA intron (ENSMUSG00000030604.9, intron 3 of 3) protein_coding-intron (ENSMUSG00000030604.9, intron 1 of 2) 4297 ENSMUSG00000030604.9 ENSMUSG00000030604 ENSMUST00000080175 Zfp626 protein_coding Interval_58785 chr15 38059839 38060515 + 0 NA intron (ENSMUSG00000037487.7, intron 1 of 58) protein_coding-intron (ENSMUSG00000037487.7, intron 1 of 58) 1892 ENSMUSG00000065852.1 ENSMUSG00000065852 ENSMUST00000083918 Gm22353 snoRNA Interval_24917 chr11 41269003 41270376 + 0 NA Intergenic Intergenic 50852 ENSMUSG00000086475.1 ENSMUSG00000086475 ENSMUST00000133945 Platr13 lincRNA Interval_21591 chr10 130368669 130369360 + 0 NA Intergenic Intergenic 25318 ENSMUSG00000070601.5 ENSMUSG00000070601 ENSMUST00000233031 Vmn2r84 protein_coding Interval_132921 chr5 148747889 148748684 + 0 NA Intergenic Intergenic 5154 ENSMUSG00000084513.1 ENSMUSG00000084513 ENSMUST00000122564 n-R5s179 rRNA Interval_95914 chr2 118355794 118356173 + 0 NA intron (ENSMUSG00000040133.2, intron 1 of 2) protein_coding-intron (ENSMUSG00000040133.2, intron 1 of 2) 4745 ENSMUSG00000088497.1 ENSMUSG00000088497 ENSMUST00000157872 Gm22651 rRNA Interval_30841 chr11 96812786 96813068 + 0 NA Intergenic Intergenic 11200 ENSMUSG00000038615.17 ENSMUSG00000038615 ENSMUST00000135836 Nfe2l1 protein_coding Interval_150024 chr7 105039175 105040096 + 0 NA Intergenic Intergenic 6937 ENSMUSG00000073915.5 ENSMUSG00000073915 ENSMUST00000098162 Olfr676 protein_coding Interval_148763 chr7 86348812 86349405 + 0 NA Intergenic Intergenic 4611 ENSMUSG00000092388.2 ENSMUSG00000092388 ENSMUST00000174677 Olfr306-ps1 unprocessed_pseudogene Interval_3433 chr1 58332404 58333265 + 0 NA intron (ENSMUSG00000079554.2, intron 22 of 35) protein_coding-intron (ENSMUSG00000079554.2, intron 22 of 35) -17178 ENSMUSG00000089822.1 ENSMUSG00000089822 ENSMUST00000161126 Gm15759 antisense Interval_154273 chr8 13961433 13962081 + 0 NA exon (ENSMUSG00000050052.12, exon 1 of 3) protein_coding-exon (ENSMUSG00000050052.12, exon 1 of 3) 12936 ENSMUSG00000050052.12 ENSMUSG00000050052 ENSMUST00000119182 Tdrp protein_coding Interval_70852 chr17 15395454 15396765 + 0 NA promoter-TSS (ENSMUSG00000014763.8) protein_coding-promoter-TSS (ENSMUSG00000014763.8) -7295 ENSMUSG00000014763.8 ENSMUSG00000014763 ENSMUST00000231318 Fam120b protein_coding Interval_85174 chr19 23373079 23373879 + 0 NA intron (ENSMUSG00000033207.7, intron 5 of 13) protein_coding-intron (ENSMUSG00000033207.7, intron 5 of 13) -44864 ENSMUSG00000118092.1 ENSMUSG00000118092 ENSMUST00000235597 Gm50445 lincRNA Interval_13145 chr10 12481846 12482287 + 0 NA intron (ENSMUSG00000019820.11, intron 5 of 24) protein_coding-intron (ENSMUSG00000019820.11, intron 54 of 73) -60470 ENSMUSG00000112816.1 ENSMUSG00000112816 ENSMUST00000220361 Gm48798 TEC Interval_164610 chr9 40018269 40018733 + 0 NA Intergenic Intergenic -2963 ENSMUSG00000046678.6 ENSMUSG00000046678 ENSMUST00000059859 Olfr981 protein_coding Interval_78556 chr18 14676106 14677459 + 0 NA intron (ENSMUSG00000037013.17, intron 1 of 7) protein_coding-intron (ENSMUSG00000037013.17, intron 2 of 10) -28852 ENSMUSG00000094306.1 ENSMUSG00000094306 ENSMUST00000084007 Gm24924 snRNA Interval_100746 chr2 172299278 172300721 + 0 NA Intergenic Intergenic 11866 ENSMUSG00000085949.1 ENSMUSG00000085949 ENSMUST00000152112 Gm14275 lincRNA Interval_46613 chr13 67577608 67579522 + 0 NA Intergenic Intergenic -24735 ENSMUSG00000095432.9 ENSMUSG00000095432 ENSMUST00000053289 Zfp748 protein_coding Interval_156389 chr8 47872277 47872939 + 0 NA intron (ENSMUSG00000031563.8, intron 9 of 22) protein_coding-intron (ENSMUSG00000031563.8, intron 9 of 22) -26574 ENSMUSG00000064519.1 ENSMUSG00000064519 ENSMUST00000082585 n-R5s97 rRNA Interval_156814 chr8 60735985 60737479 + 0 NA Intergenic Intergenic 17441 ENSMUSG00000109992.1 ENSMUSG00000109992 ENSMUST00000211162 Gm45650 lincRNA Interval_136306 chr6 52818969 52819848 + 0 NA intron (ENSMUSG00000063568.11, intron 2 of 4) protein_coding-intron (ENSMUSG00000063568.11, intron 2 of 4) 24293 ENSMUSG00000081872.1 ENSMUSG00000081872 ENSMUST00000119248 Gm15572 processed_pseudogene Interval_58661 chr15 36878659 36878993 + 0 NA intron (ENSMUSG00000072618.2, intron 1 of 1) lincRNA-intron (ENSMUSG00000072618.2, intron 1 of 1) 990 ENSMUSG00000072618.2 ENSMUSG00000072618 ENSMUST00000100713 Gm10384 lincRNA Interval_25081 chr11 43740765 43741072 + 0 NA intron (ENSMUSG00000041278.10, intron 3 of 7) protein_coding-intron (ENSMUSG00000041278.10, intron 3 of 7) 7074 ENSMUSG00000041278.10 ENSMUSG00000041278 ENSMUST00000147984 Ttc1 protein_coding Interval_133145 chr5 150167074 150167374 + 0 NA intron (ENSMUSG00000056602.12, intron 1 of 6) protein_coding-intron (ENSMUSG00000056602.12, intron 1 of 4) -76639 ENSMUSG00000107082.1 ENSMUSG00000107082 ENSMUST00000201709 Gm36378 processed_pseudogene Interval_93615 chr2 74977602 74978072 + 0 NA Intergenic Intergenic -42323 ENSMUSG00000084574.1 ENSMUSG00000084574 ENSMUST00000122625 n-R5s198 rRNA Interval_130101 chr5 124268522 124268800 + 0 NA intron (ENSMUSG00000038126.17, intron 15 of 22) protein_coding-intron (ENSMUSG00000038126.17, intron 14 of 21) 10898 ENSMUSG00000087784.1 ENSMUSG00000087784 ENSMUST00000157159 Gm23171 misc_RNA Interval_58712 chr15 37278909 37279866 + 0 NA exon (ENSMUSG00000022286.16, exon 4 of 16) protein_coding-exon (ENSMUSG00000022286.16, exon 4 of 16) -6206 ENSMUSG00000022286.16 ENSMUSG00000022286 ENSMUST00000159221 Grhl2 protein_coding Interval_49900 chr13 118035476 118036196 + 0 NA promoter-TSS (ENSMUSG00000088155.1) snoRNA-promoter-TSS (ENSMUSG00000088155.1) -778 ENSMUSG00000088155.1 ENSMUSG00000088155 ENSMUST00000157530 Gm26349 snoRNA Interval_24218 chr11 31602556 31602827 + 0 NA Intergenic Intergenic 69036 ENSMUSG00000044502.16 ENSMUSG00000044502 ENSMUST00000109415 Bod1 protein_coding Interval_155432 chr8 33566058 33566269 + 0 NA intron (ENSMUSG00000009628.14, intron 7 of 10) protein_coding-intron (ENSMUSG00000009628.14, intron 7 of 7) -33462 ENSMUSG00000009630.10 ENSMUSG00000009630 ENSMUST00000009774 Ppp2cb protein_coding Interval_107701 chr3 111379771 111380402 + 0 NA Intergenic Intergenic -57229 ENSMUSG00000106100.1 ENSMUSG00000106100 ENSMUST00000199881 Gm9314 processed_pseudogene Interval_28814 chr11 78487135 78488463 + 0 NA promoter-TSS (ENSMUSG00000050132.13) protein_coding-promoter-TSS (ENSMUSG00000050132.13) -504 ENSMUSG00000050132.13 ENSMUSG00000050132 ENSMUST00000130955 Sarm1 protein_coding Interval_158199 chr8 79730570 79730812 + 0 NA intron (ENSMUSG00000036977.8, intron 4 of 4) protein_coding-intron (ENSMUSG00000036977.8, intron 4 of 4) 18840 ENSMUSG00000036977.8 ENSMUSG00000036977 ENSMUST00000210485 Anapc10 protein_coding Interval_96926 chr2 129587361 129588592 + 0 NA Intergenic Intergenic -4863 ENSMUSG00000037902.18 ENSMUSG00000037902 ENSMUST00000162764 Sirpa protein_coding Interval_100796 chr2 172567457 172569220 + 0 NA Intergenic Intergenic 17347 ENSMUSG00000028640.11 ENSMUSG00000028640 ENSMUST00000142633 Tfap2c protein_coding Interval_62085 chr15 86348149 86348890 + 0 NA intron (ENSMUSG00000051864.10, intron 8 of 12) protein_coding-intron (ENSMUSG00000051864.10, intron 8 of 12) 113014 ENSMUSG00000051864.10 ENSMUSG00000051864 ENSMUST00000229242 Tbc1d22a protein_coding Interval_145564 chr7 35639942 35640192 + 0 NA TTS (ENSMUSG00000034867.16) protein_coding-TTS (ENSMUSG00000034867.16) 2977 ENSMUSG00000030417.15 ENSMUSG00000030417 ENSMUST00000130340 Pdcd5 protein_coding Interval_32975 chr11 113463960 113464525 + 0 NA intron (ENSMUSG00000041654.15, intron 4 of 4) protein_coding-intron (ENSMUSG00000041654.15, intron 5 of 10) -3735 ENSMUSG00000078251.2 ENSMUSG00000078251 ENSMUST00000105048 Gm16487 pseudogene Interval_128922 chr5 116116128 116116984 + 0 NA Intergenic Intergenic -7058 ENSMUSG00000086655.1 ENSMUSG00000086655 ENSMUST00000127792 C330018A13Rik antisense Interval_120496 chr4 148989528 148990866 + 0 NA intron (ENSMUSG00000028975.16, intron 3 of 3) protein_coding-intron (ENSMUSG00000028975.16, intron 3 of 8) 29837 ENSMUSG00000086740.1 ENSMUSG00000086740 ENSMUST00000153443 Gm17029 antisense Interval_57871 chr15 24161588 24162210 + 0 NA Intergenic Intergenic -31714 ENSMUSG00000115341.1 ENSMUSG00000115341 ENSMUST00000227502 Gm48919 processed_pseudogene Interval_31531 chr11 101199480 101200019 + 0 NA intron (ENSMUSG00000006920.14, intron 2 of 2) protein_coding-intron (ENSMUSG00000006920.14, intron 14 of 14) 9656 ENSMUSG00000006920.14 ENSMUSG00000006920 ENSMUST00000151291 Ezh1 protein_coding Interval_13117 chr10 11668886 11669758 + 0 NA Intergenic Intergenic 21317 ENSMUSG00000077539.1 ENSMUSG00000077539 ENSMUST00000104351 Gm22546 snoRNA Interval_116112 chr4 107822784 107823382 + 0 NA promoter-TSS (ENSMUSG00000028613.15) protein_coding-promoter-TSS (ENSMUSG00000028613.15) -61 ENSMUSG00000073779.7 ENSMUSG00000073779 ENSMUST00000150323 Lrp8os2 antisense Interval_52615 chr14 47953128 47953367 + 0 NA Intergenic Intergenic -6772 ENSMUSG00000114989.1 ENSMUSG00000114989 ENSMUST00000228393 Gm49303 lincRNA Interval_30384 chr11 94037514 94037865 + 0 NA promoter-TSS (ENSMUSG00000081604.5) processed_pseudogene-promoter-TSS (ENSMUSG00000081604.5) -61 ENSMUSG00000081604.5 ENSMUSG00000081604 ENSMUST00000118048 Gm11518 processed_pseudogene Interval_4657 chr1 75749803 75750232 + 0 NA Intergenic Intergenic 113627 ENSMUSG00000082012.1 ENSMUSG00000082012 ENSMUST00000121823 Gm5257 processed_pseudogene Interval_9471 chr1 157465416 157465823 + 0 NA intron (ENSMUSG00000033488.11, intron 2 of 4) protein_coding-intron (ENSMUSG00000033488.11, intron 5 of 9) 3667 ENSMUSG00000033488.11 ENSMUSG00000033488 ENSMUST00000194220 Cryzl2 protein_coding Interval_74708 chr17 56096991 56097205 + 0 NA TTS (ENSMUSG00000002833.11) protein_coding-TTS (ENSMUSG00000002833.11) 12705 ENSMUSG00000002831.14 ENSMUSG00000002831 ENSMUST00000190703 Plin4 protein_coding Interval_38463 chr12 79208623 79209368 + 0 NA promoter-TSS (ENSMUSG00000021123.12) protein_coding-promoter-TSS (ENSMUSG00000021123.12) 48 ENSMUSG00000021123.12 ENSMUSG00000021123 ENSMUST00000140823 Rdh12 protein_coding Interval_100372 chr2 168691647 168692225 + 0 NA intron (ENSMUSG00000027546.15, intron 4 of 27) protein_coding-intron (ENSMUSG00000027546.15, intron 4 of 27) 50028 ENSMUSG00000027546.15 ENSMUSG00000027546 ENSMUST00000156555 Atp9a protein_coding Interval_118859 chr4 134102189 134103048 + 0 NA promoter-TSS (ENSMUSG00000012126.16) protein_coding-promoter-TSS (ENSMUSG00000012126.16) 0 ENSMUSG00000012126.16 ENSMUSG00000012126 ENSMUST00000151407 Ubxn11 protein_coding Interval_160170 chr8 106917224 106917792 + 0 NA intron (ENSMUSG00000041438.8, intron 12 of 14) protein_coding-intron (ENSMUSG00000041438.8, intron 13 of 16) 10905 ENSMUSG00000074108.1 ENSMUSG00000074108 ENSMUST00000098432 Rpl10-ps2 processed_pseudogene Interval_68623 chr16 81705089 81705308 + 0 NA Intergenic Intergenic -87018 ENSMUSG00000116803.1 ENSMUSG00000116803 ENSMUST00000231467 Gm49558 processed_pseudogene Interval_93234 chr2 71349487 71350580 + 0 NA intron (ENSMUSG00000027010.16, intron 2 of 16) protein_coding-intron (ENSMUSG00000027010.16, intron 2 of 17) 17500 ENSMUSG00000027010.16 ENSMUSG00000027010 ENSMUST00000146653 Slc25a12 protein_coding Interval_63102 chr15 99083039 99084774 + 0 NA TTS (ENSMUSG00000032783.9) protein_coding-TTS (ENSMUSG00000032783.9) 3101 ENSMUSG00000098698.1 ENSMUSG00000098698 ENSMUST00000183449 Mir6960 miRNA Interval_137103 chr6 67373294 67373493 + 0 NA intron (ENSMUSG00000018341.12, intron 1 of 15) protein_coding-intron (ENSMUSG00000018341.12, intron 1 of 15) 11948 ENSMUSG00000107907.1 ENSMUSG00000107907 ENSMUST00000203207 Gm8574 processed_pseudogene Interval_134881 chr6 33059577 33060584 + 0 NA exon (ENSMUSG00000053768.13, exon 1 of 8) protein_coding-exon (ENSMUSG00000053768.13, exon 1 of 8) -17961 ENSMUSG00000106676.1 ENSMUSG00000106676 ENSMUST00000200761 Gm42895 TEC Interval_73299 chr17 36041747 36043143 + 0 NA promoter-TSS (ENSMUSG00000073407.1) protein_coding-promoter-TSS (ENSMUSG00000073407.1) 238 ENSMUSG00000056116.18 ENSMUSG00000056116 ENSMUST00000077960 H2-T22 protein_coding Interval_113344 chr4 53625145 53625361 + 0 NA Intergenic Intergenic -18027 ENSMUSG00000054752.16 ENSMUSG00000054752 ENSMUST00000180164 Fsd1l protein_coding Interval_57621 chr15 12886724 12887668 + 0 NA intron (ENSMUSG00000022191.16, intron 19 of 34) protein_coding-intron (ENSMUSG00000022191.16, intron 19 of 34) 45100 ENSMUSG00000104911.1 ENSMUSG00000104911 ENSMUST00000198820 Gm47288 miRNA Interval_16229 chr10 61555119 61555436 + 0 NA intron (ENSMUSG00000037151.8, intron 4 of 4) protein_coding-intron (ENSMUSG00000037151.8, intron 4 of 4) -15634 ENSMUSG00000112255.1 ENSMUSG00000112255 ENSMUST00000219114 Gm47594 TEC Interval_172030 chr9 123669582 123670079 + 0 NA intron (ENSMUSG00000036814.13, intron 1 of 9) protein_coding-intron (ENSMUSG00000036814.13, intron 1 of 10) -8266 ENSMUSG00000090608.1 ENSMUSG00000090608 ENSMUST00000170214 Gm17200 lincRNA Interval_61372 chr15 81174498 81174783 + 0 NA intron (ENSMUSG00000042292.18, intron 1 of 14) protein_coding-intron (ENSMUSG00000042292.18, intron 1 of 3) -16213 ENSMUSG00000047938.7 ENSMUSG00000047938 ENSMUST00000138715 4930483J18Rik processed_transcript Interval_85618 chr19 29100820 29101843 + 0 NA promoter-TSS (ENSMUSG00000024785.7) protein_coding-promoter-TSS (ENSMUSG00000024785.7) -44 ENSMUSG00000024785.7 ENSMUSG00000024785 ENSMUST00000235900 Rcl1 protein_coding Interval_8990 chr1 152949780 152950172 + 0 NA exon (ENSMUSG00000100702.1, exon 1 of 1) processed_pseudogene-exon (ENSMUSG00000100702.1, exon 1 of 1) 121 ENSMUSG00000100702.1 ENSMUSG00000100702 ENSMUST00000187136 Gm8976 processed_pseudogene Interval_35499 chr12 23109023 23109505 + 0 NA Intergenic Intergenic 6320 ENSMUSG00000113174.1 ENSMUSG00000113174 ENSMUST00000222008 Gm9292 unprocessed_pseudogene Interval_49596 chr13 113321866 113323182 + 0 NA intron (ENSMUSG00000021763.17, intron 3 of 9) protein_coding-intron (ENSMUSG00000021763.17, intron 3 of 9) 29365 ENSMUSG00000021763.17 ENSMUSG00000021763 ENSMUST00000135096 BC067074 protein_coding Interval_14214 chr10 28960415 28960685 + 0 NA Intergenic Intergenic -6248 ENSMUSG00000088093.1 ENSMUSG00000088093 ENSMUST00000157468 Gm22811 ribozyme Interval_165398 chr9 47439033 47441165 + 0 NA Intergenic Intergenic 34819 ENSMUSG00000111755.1 ENSMUSG00000111755 ENSMUST00000214343 Gm47160 TEC Interval_62690 chr15 96285011 96288658 + 0 NA promoter-TSS (ENSMUSG00000033237.19) protein_coding-promoter-TSS (ENSMUSG00000033237.19) -2339 ENSMUSG00000097536.2 ENSMUSG00000097536 ENSMUST00000185067 2610037D02Rik lincRNA Interval_96085 chr2 119674505 119675725 + 0 NA promoter-TSS (ENSMUSG00000027304.9) protein_coding-promoter-TSS (ENSMUSG00000027304.9) 5956 ENSMUSG00000081416.1 ENSMUSG00000081416 ENSMUST00000121637 Gm14383 processed_pseudogene Interval_12202 chr1 190808755 190809578 + 0 NA intron (ENSMUSG00000089872.10, intron 6 of 8) protein_coding-intron (ENSMUSG00000089872.10, intron 9 of 14) 90551 ENSMUSG00000089872.10 ENSMUSG00000089872 ENSMUST00000159066 Rps6kc1 protein_coding Interval_67378 chr16 48244446 48244653 + 0 NA Intergenic Intergenic -17265 ENSMUSG00000116756.1 ENSMUSG00000116756 ENSMUST00000232184 Gm49770 processed_pseudogene Interval_50116 chr14 8087195 8088996 + 0 NA intron (ENSMUSG00000023156.4, intron 4 of 5) protein_coding-intron (ENSMUSG00000023156.4, intron 4 of 5) -1983 ENSMUSG00000023156.4 ENSMUSG00000023156 ENSMUST00000180369 Rpp14 protein_coding Interval_120155 chr4 143106847 143107813 + 0 NA TTS (ENSMUSG00000057637.13) protein_coding-TTS (ENSMUSG00000057637.13) 28832 ENSMUSG00000106597.1 ENSMUSG00000106597 ENSMUST00000197026 Mir7021 miRNA Interval_38095 chr12 75629440 75630345 + 0 NA TTS (ENSMUSG00000045690.8) protein_coding-TTS (ENSMUSG00000045690.8) 1426 ENSMUSG00000118552.1 ENSMUSG00000118552 ENSMUST00000238938 AC124742.1 protein_coding Interval_127839 chr5 108113181 108113549 + 0 NA intron (ENSMUSG00000063406.11, intron 2 of 2) protein_coding-intron (ENSMUSG00000063406.11, intron 2 of 2) 19165 ENSMUSG00000063406.11 ENSMUSG00000063406 ENSMUST00000119784 Tmed5 protein_coding Interval_18453 chr10 86139277 86139468 + 0 NA intron (ENSMUSG00000059602.14, intron 6 of 8) protein_coding-intron (ENSMUSG00000059602.14, intron 6 of 13) 13545 ENSMUSG00000087256.1 ENSMUSG00000087256 ENSMUST00000132223 Gm15990 antisense Interval_9238 chr1 155388389 155388748 + 0 NA intron (ENSMUSG00000026469.14, intron 1 of 6) protein_coding-intron (ENSMUSG00000026469.14, intron 1 of 14) 72602 ENSMUSG00000093286.1 ENSMUSG00000093286 ENSMUST00000175545 Gm22569 miRNA Interval_47962 chr13 94681045 94682437 + 0 NA Intergenic Intergenic 18615 ENSMUSG00000112934.1 ENSMUSG00000112934 ENSMUST00000221742 Gm32305 lincRNA Interval_20793 chr10 120977927 120979867 + 0 NA exon (ENSMUSG00000048661.14, exon 1 of 14) protein_coding-exon (ENSMUSG00000048661.14, exon 1 of 14) 435 ENSMUSG00000048661.14 ENSMUSG00000048661 ENSMUST00000119093 Lemd3 protein_coding Interval_125476 chr5 67437412 67437654 + 0 NA exon (ENSMUSG00000097840.1, exon 3 of 3) antisense-exon (ENSMUSG00000097840.1, exon 3 of 3) 9540 ENSMUSG00000106832.1 ENSMUSG00000106832 ENSMUST00000201707 Gm42632 TEC Interval_123872 chr5 36163321 36164264 + 0 NA intron (ENSMUSG00000029093.14, intron 3 of 4) protein_coding-intron (ENSMUSG00000029093.14, intron 2 of 26) -40229 ENSMUSG00000043430.5 ENSMUSG00000043430 ENSMUST00000052224 Psapl1 protein_coding Interval_76567 chr17 81185388 81185617 + 0 NA Intergenic Intergenic 61236 ENSMUSG00000117496.1 ENSMUSG00000117496 ENSMUST00000234904 Gm50042 processed_pseudogene Interval_82000 chr18 67028979 67029727 + 0 NA TTS (ENSMUSG00000117868.1) lincRNA-TTS (ENSMUSG00000117868.1) 2165 ENSMUSG00000117868.1 ENSMUSG00000117868 ENSMUST00000236079 Gm50165 lincRNA Interval_55338 chr14 83790299 83790856 + 0 NA Intergenic Intergenic 37929 ENSMUSG00000115780.1 ENSMUSG00000115780 ENSMUST00000226600 Gm49053 processed_pseudogene Interval_60800 chr15 76851590 76852118 + 0 NA TTS (ENSMUSG00000022526.8) protein_coding-TTS (ENSMUSG00000022526.8) 19131 ENSMUSG00000022526.8 ENSMUSG00000022526 ENSMUST00000230524 Zfp251 protein_coding Interval_48251 chr13 97447190 97448390 + 0 NA intron (ENSMUSG00000078952.9, intron 1 of 1) lincRNA-intron (ENSMUSG00000078952.9, intron 1 of 1) 11287 ENSMUSG00000098238.1 ENSMUSG00000098238 ENSMUST00000183250 Gm8756 processed_pseudogene Interval_37496 chr12 69364013 69364464 + 0 NA Intergenic Intergenic -2757 ENSMUSG00000099250.1 ENSMUSG00000099250 ENSMUST00000175032 Rn7s2 misc_RNA Interval_145020 chr7 29469156 29469955 + 0 NA intron (ENSMUSG00000030583.16, intron 1 of 2) protein_coding-intron (ENSMUSG00000030583.16, intron 2 of 22) -54988 ENSMUSG00000074224.3 ENSMUSG00000074224 ENSMUST00000098602 4932431P20Rik transcribed_unitary_pseudogene Interval_32254 chr11 106516080 106517273 + 0 NA intron (ENSMUSG00000040548.16, intron 8 of 11) protein_coding-intron (ENSMUSG00000040548.16, intron 8 of 11) 15431 ENSMUSG00000080540.2 ENSMUSG00000080540 ENSMUST00000116890 Gm22711 snoRNA Interval_31310 chr11 99617896 99618116 + 0 NA Intergenic Intergenic 2429 ENSMUSG00000062278.2 ENSMUSG00000062278 ENSMUST00000073853 Gm11562 protein_coding Interval_141064 chr6 124762977 124763904 + 0 NA promoter-TSS (ENSMUSG00000004267.16) protein_coding-promoter-TSS (ENSMUSG00000004267.16) 6080 ENSMUSG00000004267.16 ENSMUSG00000004267 ENSMUST00000156033 Eno2 protein_coding Interval_159485 chr8 95020497 95020884 + 0 NA promoter-TSS (ENSMUSG00000060470.7) protein_coding-promoter-TSS (ENSMUSG00000060470.7) -104 ENSMUSG00000060470.7 ENSMUSG00000060470 ENSMUST00000212570 Adgrg3 protein_coding Interval_86239 chr19 38030271 38031468 + 0 NA intron (ENSMUSG00000048612.16, intron 1 of 9) protein_coding-intron (ENSMUSG00000048612.16, intron 1 of 52) 12530 ENSMUSG00000048612.16 ENSMUSG00000048612 ENSMUST00000226084 Myof protein_coding Interval_93120 chr2 70370623 70370829 + 0 NA intron (ENSMUSG00000042064.13, intron 31 of 33) protein_coding-intron (ENSMUSG00000042064.13, intron 32 of 34) -88256 ENSMUSG00000047965.9 ENSMUSG00000047965 ENSMUST00000140507 Rpl9-ps7 processed_pseudogene Interval_36374 chr12 42566163 42567166 + 0 NA Intergenic Intergenic 284948 ENSMUSG00000093214.1 ENSMUSG00000093214 ENSMUST00000175473 Gm25248 miRNA Interval_110981 chr4 11013574 11016533 + 0 NA Intergenic Intergenic -7126 ENSMUSG00000049969.3 ENSMUSG00000049969 ENSMUST00000137891 Plekhf2 protein_coding Interval_126593 chr5 90583129 90583339 + 0 NA intron (ENSMUSG00000070690.7, intron 10 of 13) protein_coding-intron (ENSMUSG00000070690.7, intron 10 of 13) 5823 ENSMUSG00000106863.3 ENSMUSG00000106863 ENSMUST00000200783 Gm42109 processed_transcript Interval_153928 chr8 11260085 11260808 + 0 NA intron (ENSMUSG00000031502.11, intron 2 of 52) protein_coding-intron (ENSMUSG00000031502.11, intron 2 of 51) 30821 ENSMUSG00000109358.1 ENSMUSG00000109358 ENSMUST00000209007 Gm44716 TEC Interval_168755 chr9 86712316 86712921 + 0 NA exon (ENSMUSG00000104120.1, exon 1 of 1) TEC-exon (ENSMUSG00000104120.1, exon 1 of 1) 614 ENSMUSG00000104120.1 ENSMUSG00000104120 ENSMUST00000195378 Gm37484 TEC Interval_77901 chr18 5161974 5164031 + 0 NA exon (ENSMUSG00000097888.2, exon 3 of 3) lincRNA-exon (ENSMUSG00000097888.2, exon 3 of 3) 2729 ENSMUSG00000097888.2 ENSMUSG00000097888 ENSMUST00000180850 Gm26682 lincRNA Interval_165641 chr9 50616609 50617733 + 0 NA promoter-TSS (ENSMUSG00000000167.14) protein_coding-promoter-TSS (ENSMUSG00000000167.14) 293 ENSMUSG00000059820.14 ENSMUSG00000059820 ENSMUST00000147671 Nkapd1 protein_coding Interval_165991 chr9 55245552 55246523 + 0 NA intron (ENSMUSG00000032311.17, intron 2 of 2) protein_coding-intron (ENSMUSG00000032311.17, intron 3 of 3) 37051 ENSMUSG00000032309.15 ENSMUSG00000032309 ENSMUST00000133795 Fbxo22 protein_coding Interval_67555 chr16 50756405 50756987 + 0 NA Intergenic Intergenic -24013 ENSMUSG00000022639.14 ENSMUSG00000022639 ENSMUST00000169791 Dubr lincRNA Interval_53013 chr14 53460969 53461230 + 0 NA promoter-TSS (ENSMUSG00000094766.3) TR_V_gene-promoter-TSS (ENSMUSG00000094766.3) 0 ENSMUSG00000094766.3 ENSMUSG00000094766 ENSMUST00000181728 Trav7-4 TR_V_gene Interval_160218 chr8 107205266 107207041 + 0 NA Intergenic Intergenic 40238 ENSMUSG00000031924.4 ENSMUSG00000031924 ENSMUST00000212920 Cyb5b protein_coding Interval_102222 chr3 19584751 19586162 + 0 NA TTS (ENSMUSG00000084339.1) processed_pseudogene-TTS (ENSMUSG00000084339.1) 665 ENSMUSG00000084339.1 ENSMUSG00000084339 ENSMUST00000117181 Gm6141 processed_pseudogene Interval_80557 chr18 44135785 44136263 + 0 NA Intergenic Intergenic 19761 ENSMUSG00000110628.1 ENSMUSG00000110628 ENSMUST00000212114 Gm37797 protein_coding Interval_40600 chr12 105950398 105950617 + 0 NA Intergenic Intergenic 50666 ENSMUSG00000113835.1 ENSMUSG00000113835 ENSMUST00000220934 Gm19554 lincRNA Interval_47258 chr13 79867379 79869397 + 0 NA Intergenic Intergenic -10074 ENSMUSG00000114222.1 ENSMUSG00000114222 ENSMUST00000226041 Gm19320 processed_pseudogene Interval_23365 chr11 21928957 21929366 + 0 NA Intergenic Intergenic -23979 ENSMUSG00000082874.4 ENSMUSG00000082874 ENSMUST00000120694 Rpl15-ps1 processed_pseudogene Interval_170358 chr9 107381634 107382110 + 0 NA Intergenic Intergenic -27886 ENSMUSG00000102144.1 ENSMUSG00000102144 ENSMUST00000194547 4930429P21Rik lincRNA Interval_112993 chr4 46668591 46669048 + 0 NA intron (ENSMUSG00000039809.10, intron 5 of 6) protein_coding-intron (ENSMUSG00000039809.10, intron 17 of 18) -18610 ENSMUSG00000039813.14 ENSMUSG00000039813 ENSMUST00000107750 Tbc1d2 protein_coding Interval_130387 chr5 127217142 127218204 + 0 NA Intergenic Intergenic -16576 ENSMUSG00000104778.1 ENSMUSG00000104778 ENSMUST00000197873 Gm43476 lincRNA Interval_131150 chr5 135446325 135446597 + 0 NA intron (ENSMUSG00000039959.13, intron 9 of 13) protein_coding-intron (ENSMUSG00000039959.13, intron 8 of 30) 19466 ENSMUSG00000039959.13 ENSMUSG00000039959 ENSMUST00000202044 Hip1 protein_coding Interval_13376 chr10 17559908 17560236 + 0 NA Intergenic Intergenic -33158 ENSMUSG00000111927.1 ENSMUSG00000111927 ENSMUST00000220318 Gm47770 lincRNA Interval_79806 chr18 35212872 35214042 + 0 NA exon (ENSMUSG00000071862.3, exon 2 of 2) protein_coding-exon (ENSMUSG00000071862.3, exon 2 of 2) 1567 ENSMUSG00000071862.3 ENSMUSG00000071862 ENSMUST00000236680 Lrrtm2 protein_coding Interval_124221 chr5 41643288 41644222 + 0 NA intron (ENSMUSG00000029128.12, intron 4 of 6) protein_coding-intron (ENSMUSG00000029128.12, intron 4 of 6) 64402 ENSMUSG00000029128.12 ENSMUSG00000029128 ENSMUST00000201473 Rab28 protein_coding Interval_143225 chr7 4614010 4614403 + 0 NA Intergenic Intergenic -1041 ENSMUSG00000108582.1 ENSMUSG00000108582 ENSMUST00000205814 Gm18973 processed_pseudogene Interval_32928 chr11 113182247 113182459 + 0 NA intron (ENSMUSG00000087259.7, intron 1 of 2) lincRNA-intron (ENSMUSG00000087259.7, intron 1 of 2) -9276 ENSMUSG00000087259.7 ENSMUSG00000087259 ENSMUST00000150712 2610035D17Rik lincRNA Interval_1681 chr1 31061581 31061894 + 0 NA intron (ENSMUSG00000086727.8, intron 2 of 4) protein_coding-intron (ENSMUSG00000086727.8, intron 4 of 5) 19818 ENSMUSG00000100237.1 ENSMUSG00000100237 ENSMUST00000191364 Gm28644 lincRNA Interval_140615 chr6 120108232 120109653 + 0 NA intron (ENSMUSG00000041377.12, intron 1 of 3) protein_coding-intron (ENSMUSG00000041377.12, intron 1 of 3) 15592 ENSMUSG00000041377.12 ENSMUSG00000041377 ENSMUST00000035244 Ninj2 protein_coding Interval_81451 chr18 60835836 60836856 + 0 NA intron (ENSMUSG00000024613.16, intron 6 of 19) protein_coding-intron (ENSMUSG00000024613.16, intron 6 of 22) 12100 ENSMUSG00000024613.16 ENSMUSG00000024613 ENSMUST00000177343 Tcof1 protein_coding Interval_78114 chr18 8418488 8419024 + 0 NA Intergenic Intergenic 3627 ENSMUSG00000117484.1 ENSMUSG00000117484 ENSMUST00000234117 Gm5500 processed_pseudogene Interval_11510 chr1 182335386 182335990 + 0 NA intron (ENSMUSG00000047539.9, intron 1 of 3) protein_coding-intron (ENSMUSG00000047539.9, intron 1 of 4) 5883 ENSMUSG00000047539.9 ENSMUSG00000047539 ENSMUST00000194213 Fbxo28 protein_coding Interval_85284 chr19 24372333 24372909 + 0 NA intron (ENSMUSG00000024867.14, intron 7 of 13) protein_coding-intron (ENSMUSG00000024867.14, intron 7 of 14) -43388 ENSMUSG00000085003.1 ENSMUSG00000085003 ENSMUST00000126936 Pip5k1bos antisense Interval_17021 chr10 70484098 70485463 + 0 NA intron (ENSMUSG00000043259.15, intron 5 of 10) protein_coding-intron (ENSMUSG00000043259.15, intron 4 of 13) 16723 ENSMUSG00000087774.1 ENSMUSG00000087774 ENSMUST00000157149 Gm22320 misc_RNA Interval_72296 chr17 29024109 29025638 + 0 NA intron (ENSMUSG00000086154.2, intron 1 of 2) bidirectional_promoter_lncRNA-intron (ENSMUSG00000086154.2, intron 1 of 2) 3580 ENSMUSG00000087308.1 ENSMUSG00000087308 ENSMUST00000130607 Gm16195 lincRNA Interval_3257 chr1 55210318 55210937 + 0 NA intron (ENSMUSG00000025978.14, intron 1 of 7) protein_coding-intron (ENSMUSG00000025978.14, intron 3 of 8) -15671 ENSMUSG00000097649.2 ENSMUSG00000097649 ENSMUST00000209801 Gm10561 antisense Interval_47674 chr13 91093306 91094678 + 0 NA intron (ENSMUSG00000021619.6, intron 3 of 7) protein_coding-intron (ENSMUSG00000021619.6, intron 3 of 7) -126460 ENSMUSG00000091419.2 ENSMUSG00000091419 ENSMUST00000164671 Gm17450 pseudogene Interval_145536 chr7 35447599 35449040 + 0 NA promoter-TSS (ENSMUSG00000030492.16) protein_coding-promoter-TSS (ENSMUSG00000030492.16) -781 ENSMUSG00000030492.16 ENSMUSG00000030492 ENSMUST00000141245 Slc7a9 protein_coding Interval_78229 chr18 10440486 10440863 + 0 NA intron (ENSMUSG00000042942.18, intron 1 of 8) protein_coding-intron (ENSMUSG00000042942.18, intron 1 of 32) -36112 ENSMUSG00000042942.18 ENSMUSG00000042942 ENSMUST00000173261 Greb1l protein_coding Interval_115843 chr4 105197383 105197605 + 0 NA intron (ENSMUSG00000028517.8, intron 2 of 5) protein_coding-intron (ENSMUSG00000028517.8, intron 2 of 5) 40147 ENSMUSG00000028517.8 ENSMUSG00000028517 ENSMUST00000064139 Plpp3 protein_coding Interval_106226 chr3 94779148 94779756 + 0 NA exon (ENSMUSG00000068876.16, exon 2 of 21) protein_coding-exon (ENSMUSG00000068876.16, exon 2 of 21) 7063 ENSMUSG00000068876.16 ENSMUSG00000068876 ENSMUST00000155485 Cgn protein_coding Interval_127624 chr5 105865208 105868985 + 0 NA TTS (ENSMUSG00000105074.1) processed_pseudogene-TTS (ENSMUSG00000105074.1) 735 ENSMUSG00000105074.1 ENSMUSG00000105074 ENSMUST00000200605 Gm43818 processed_pseudogene Interval_156210 chr8 46064987 46065277 + 0 NA intron (ENSMUSG00000038291.16, intron 5 of 16) protein_coding-intron (ENSMUSG00000038291.16, intron 7 of 18) 15152 ENSMUSG00000038291.16 ENSMUSG00000038291 ENSMUST00000150645 Snx25 protein_coding Interval_100025 chr2 166591777 166593125 + 0 NA intron (ENSMUSG00000039621.13, intron 15 of 37) protein_coding-intron (ENSMUSG00000039621.13, intron 17 of 39) 62691 ENSMUSG00000093063.1 ENSMUSG00000093063 ENSMUST00000175322 Gm23152 rRNA Interval_9103 chr1 153604167 153604455 + 0 NA Intergenic Intergenic 16362 ENSMUSG00000099858.1 ENSMUSG00000099858 ENSMUST00000186414 Gm6652 processed_pseudogene Interval_153484 chr7 145138708 145139867 + 0 NA Intergenic Intergenic -23709 ENSMUSG00000108967.1 ENSMUSG00000108967 ENSMUST00000207878 Gm45181 lincRNA Interval_169422 chr9 97113180 97114852 + 0 NA Intergenic Intergenic -23989 ENSMUSG00000032449.13 ENSMUSG00000032449 ENSMUST00000152632 Slc25a36 protein_coding Interval_96217 chr2 120567093 120568139 + 0 NA promoter-TSS (ENSMUSG00000027287.14) protein_coding-promoter-TSS (ENSMUSG00000027287.14) -107 ENSMUSG00000027287.14 ENSMUSG00000027287 ENSMUST00000130759 Snap23 protein_coding Interval_51291 chr14 25787080 25787600 + 0 NA Intergenic Intergenic 22541 ENSMUSG00000099057.1 ENSMUSG00000099057 ENSMUST00000184296 Gm27185 processed_pseudogene Interval_61387 chr15 81277964 81278141 + 0 NA intron (ENSMUSG00000115970.1, intron 1 of 3) lincRNA-intron (ENSMUSG00000115970.1, intron 1 of 3) -26190 ENSMUSG00000115970.1 ENSMUSG00000115970 ENSMUST00000230042 8430426J06Rik lincRNA Interval_119039 chr4 135150231 135151058 + 0 NA intron (ENSMUSG00000070691.10, intron 1 of 5) protein_coding-intron (ENSMUSG00000070691.10, intron 1 of 5) -2294 ENSMUSG00000070691.10 ENSMUSG00000070691 ENSMUST00000127109 Runx3 protein_coding Interval_103343 chr3 39844088 39844313 + 0 NA Intergenic Intergenic 20623 ENSMUSG00000106948.1 ENSMUSG00000106948 ENSMUST00000202316 Gm42785 processed_pseudogene Interval_128165 chr5 111418601 111418820 + 0 NA TTS (ENSMUSG00000070576.4) protein_coding-TTS (ENSMUSG00000070576.4) 1348 ENSMUSG00000070576.4 ENSMUSG00000070576 ENSMUST00000094463 Mn1 protein_coding Interval_6181 chr1 99870665 99870941 + 0 NA intron (ENSMUSG00000067028.11, intron 1 of 23) protein_coding-intron (ENSMUSG00000067028.11, intron 1 of 23) 22819 ENSMUSG00000104104.1 ENSMUSG00000104104 ENSMUST00000191630 Gm37877 TEC Interval_64552 chr16 13241453 13241917 + 0 NA Intergenic Intergenic 109294 ENSMUSG00000022545.13 ENSMUSG00000022545 ENSMUST00000156393 Ercc4 protein_coding Interval_71780 chr17 26040698 26041771 + 0 NA intron (ENSMUSG00000037098.18, intron 1 of 2) protein_coding-intron (ENSMUSG00000037098.18, intron 1 of 13) -22774 ENSMUSG00000037098.18 ENSMUSG00000037098 ENSMUST00000126306 Rab11fip3 protein_coding Interval_158718 chr8 85527396 85527703 + 0 NA TTS (ENSMUSG00000031700.11) protein_coding-TTS (ENSMUSG00000031700.11) 8140 ENSMUSG00000031700.11 ENSMUSG00000031700 ENSMUST00000143846 Gpt2 protein_coding Interval_163732 chr9 25023758 25025192 + 0 NA Intergenic Intergenic -32575 ENSMUSG00000111751.1 ENSMUSG00000111751 ENSMUST00000215876 Gm48256 lincRNA Interval_53179 chr14 54949891 54950856 + 0 NA exon (ENSMUSG00000040752.16, exon 26 of 39) protein_coding-exon (ENSMUSG00000040752.16, exon 26 of 39) -1231 ENSMUSG00000065432.1 ENSMUSG00000065432 ENSMUST00000083498 Mir208a miRNA Interval_112363 chr4 40838734 40839822 + 0 NA intron (ENSMUSG00000028413.13, intron 1 of 4) protein_coding-intron (ENSMUSG00000028413.13, intron 1 of 5) 10860 ENSMUSG00000096377.1 ENSMUSG00000096377 ENSMUST00000177794 Mir5123 miRNA Interval_20244 chr10 116397669 116398128 + 0 NA Intergenic Intergenic -20154 ENSMUSG00000020164.7 ENSMUSG00000020164 ENSMUST00000134586 Kcnmb4os1 antisense Interval_11145 chr1 179633112 179633993 + 0 NA Intergenic Intergenic -50293 ENSMUSG00000038936.13 ENSMUSG00000038936 ENSMUST00000192611 Sccpdh protein_coding Interval_55189 chr14 79200433 79201143 + 0 NA intron (ENSMUSG00000058997.8, intron 8 of 8) protein_coding-intron (ENSMUSG00000058997.8, intron 44 of 44) -1598 ENSMUSG00000115111.1 ENSMUSG00000115111 ENSMUST00000228380 Gm4632 antisense Interval_128743 chr5 115041416 115041637 + 0 NA TTS (ENSMUSG00000107054.1) TEC-TTS (ENSMUSG00000107054.1) 1756 ENSMUSG00000107054.1 ENSMUSG00000107054 ENSMUST00000201944 C730045M19Rik TEC Interval_28737 chr11 78001379 78001923 + 0 NA intron (ENSMUSG00000037791.15, intron 2 of 10) protein_coding-intron (ENSMUSG00000037791.15, intron 2 of 14) -21978 ENSMUSG00000037791.15 ENSMUSG00000037791 ENSMUST00000125079 Phf12 protein_coding Interval_130678 chr5 129669514 129670422 + 0 NA intron (ENSMUSG00000051034.7, intron 1 of 2) protein_coding-intron (ENSMUSG00000051034.7, intron 1 of 2) 131 ENSMUSG00000051034.7 ENSMUSG00000051034 ENSMUST00000049778 Zfp11 protein_coding Interval_41334 chr12 112908026 112908379 + 0 NA exon (ENSMUSG00000002799.6, exon 26 of 26) protein_coding-exon (ENSMUSG00000002799.6, exon 26 of 26) 2166 ENSMUSG00000002799.6 ENSMUSG00000002799 ENSMUST00000222402 Jag2 protein_coding Interval_164120 chr9 31653077 31653289 + 0 NA Intergenic Intergenic 9413 ENSMUSG00000111153.1 ENSMUSG00000111153 ENSMUST00000217424 Gm18820 processed_pseudogene Interval_44281 chr13 43321284 43321911 + 0 NA Intergenic Intergenic -18192 ENSMUSG00000051335.6 ENSMUSG00000051335 ENSMUST00000222779 Gfod1 protein_coding Interval_70131 chr17 5646858 5647843 + 0 NA intron (ENSMUSG00000034265.8, intron 1 of 8) protein_coding-intron (ENSMUSG00000034265.8, intron 1 of 8) -152141 ENSMUSG00000096965.7 ENSMUSG00000096965 ENSMUST00000181392 3300005D01Rik lincRNA Interval_52420 chr14 45895007 45895858 + 0 NA intron (ENSMUSG00000085866.1, intron 1 of 3) lincRNA-intron (ENSMUSG00000085866.1, intron 1 of 3) 24033 ENSMUSG00000081840.1 ENSMUSG00000081840 ENSMUST00000120730 Gm15220 processed_pseudogene Interval_145575 chr7 35681525 35681821 + 0 NA Intergenic Intergenic 26892 ENSMUSG00000043671.14 ENSMUSG00000043671 ENSMUST00000124116 Dpy19l3 protein_coding Interval_20893 chr10 121783441 121783734 + 0 NA exon (ENSMUSG00000020121.15, exon 22 of 22) protein_coding-exon (ENSMUSG00000020121.15, exon 22 of 22) 32707 ENSMUSG00000053684.8 ENSMUSG00000053684 ENSMUST00000138630 BC048403 protein_coding Interval_99247 chr2 158355708 158355903 + 0 NA TTS (ENSMUSG00000065362.1) snoRNA-TTS (ENSMUSG00000065362.1) 749 ENSMUSG00000065362.1 ENSMUSG00000065362 ENSMUST00000083428 Gm24411 snoRNA Interval_119897 chr4 140744617 140745157 + 0 NA TTS (ENSMUSG00000025330.6) protein_coding-TTS (ENSMUSG00000025330.6) -3240 ENSMUSG00000040935.12 ENSMUSG00000040935 ENSMUST00000130267 Padi6 protein_coding Interval_4287 chr1 72398151 72398468 + 0 NA Intergenic Intergenic -61190 ENSMUSG00000085812.1 ENSMUSG00000085812 ENSMUST00000146593 Gm15843 processed_pseudogene Interval_42720 chr13 18503814 18504327 + 0 NA Intergenic Intergenic -106384 ENSMUSG00000009734.18 ENSMUSG00000009734 ENSMUST00000222900 Pou6f2 protein_coding Interval_55248 chr14 79626397 79626740 + 0 NA intron (ENSMUSG00000022024.10, intron 3 of 3) protein_coding-intron (ENSMUSG00000022024.10, intron 12 of 12) 18942 ENSMUSG00000022025.13 ENSMUSG00000022025 ENSMUST00000167524 Cnmd protein_coding Interval_145044 chr7 29676609 29677156 + 0 NA Intergenic Intergenic -19606 ENSMUSG00000065385.1 ENSMUSG00000065385 ENSMUST00000083451 n-R5s153 rRNA Interval_123727 chr5 34948698 34950153 + 0 NA promoter-TSS (ENSMUSG00000029101.16) protein_coding-promoter-TSS (ENSMUSG00000029101.16) 34337 ENSMUSG00000051246.3 ENSMUSG00000051246 ENSMUST00000202205 Msantd1 protein_coding Interval_140789 chr6 121364727 121365833 + 0 NA TTS (ENSMUSG00000030109.15) protein_coding-TTS (ENSMUSG00000030109.15) 8460 ENSMUSG00000030109.15 ENSMUSG00000030109 ENSMUST00000170339 Slc6a12 protein_coding Interval_162038 chr8 124643800 124644367 + 0 NA intron (ENSMUSG00000031983.7, intron 2 of 3) protein_coding-intron (ENSMUSG00000031983.7, intron 2 of 3) 19286 ENSMUSG00000031983.7 ENSMUSG00000031983 ENSMUST00000034464 2310022B05Rik protein_coding Interval_61522 chr15 82157762 82158122 + 0 NA intron (ENSMUSG00000022463.8, intron 1 of 1) protein_coding-intron (ENSMUSG00000022463.8, intron 1 of 18) 10696 ENSMUSG00000022463.8 ENSMUSG00000022463 ENSMUST00000230955 Srebf2 protein_coding Interval_160850 chr8 113782702 113782948 + 0 NA intron (ENSMUSG00000053399.9, intron 3 of 9) protein_coding-intron (ENSMUSG00000053399.9, intron 3 of 22) 62479 ENSMUSG00000053399.9 ENSMUSG00000053399 ENSMUST00000212527 Adamts18 protein_coding Interval_82249 chr18 69592378 69593825 + 0 NA promoter-TSS (ENSMUSG00000053477.17) protein_coding-promoter-TSS (ENSMUSG00000053477.17) 41138 ENSMUSG00000088659.1 ENSMUSG00000088659 ENSMUST00000158034 Gm24845 rRNA Interval_65530 chr16 23097085 23098652 + 0 NA Intergenic Intergenic 4925 ENSMUSG00000116625.1 ENSMUSG00000116625 ENSMUST00000231398 Gm8134 processed_pseudogene Interval_42906 chr13 21264075 21264884 + 0 NA Intergenic Intergenic 28252 ENSMUSG00000004344.12 ENSMUSG00000004344 ENSMUST00000110491 Gpx5 protein_coding Interval_101247 chr2 179824722 179825635 + 0 NA intron (ENSMUSG00000000305.12, intron 4 of 5) protein_coding-intron (ENSMUSG00000000305.12, intron 4 of 15) 48015 ENSMUSG00000000305.12 ENSMUSG00000000305 ENSMUST00000098996 Cdh4 protein_coding Interval_63821 chr16 3752287 3752969 + 0 NA Intergenic Intergenic 4741 ENSMUSG00000022529.11 ENSMUSG00000022529 ENSMUST00000162207 Zfp263 protein_coding Interval_41292 chr12 112532935 112533332 + 0 NA Intergenic Intergenic -16386 ENSMUSG00000054013.6 ENSMUSG00000054013 ENSMUST00000222836 Tmem179 protein_coding Interval_114234 chr4 69463007 69463503 + 0 NA Intergenic Intergenic -168134 ENSMUSG00000082553.1 ENSMUSG00000082553 ENSMUST00000120872 Gm11404 processed_pseudogene Interval_95774 chr2 116066164 116067913 + 0 NA promoter-TSS (ENSMUSG00000086308.1) lincRNA-promoter-TSS (ENSMUSG00000086308.1) 406 ENSMUSG00000086328.1 ENSMUSG00000086328 ENSMUST00000140185 2700033N17Rik lincRNA Interval_125588 chr5 72246285 72246785 + 0 NA intron (ENSMUSG00000046808.17, intron 7 of 22) polymorphic_pseudogene-intron (ENSMUSG00000046808.17, intron 7 of 22) 43206 ENSMUSG00000046808.17 ENSMUSG00000046808 ENSMUST00000146393 Atp10d polymorphic_pseudogene Interval_83389 chr18 84808927 84809500 + 0 NA intron (ENSMUSG00000117781.1, intron 9 of 10) protein_coding-intron (ENSMUSG00000117781.1, intron 9 of 10) -12789 ENSMUSG00000088070.1 ENSMUSG00000088070 ENSMUST00000157445 Gm22819 misc_RNA Interval_56043 chr14 105119959 105120504 + 0 NA intron (ENSMUSG00000022119.15, intron 4 of 5) protein_coding-intron (ENSMUSG00000022119.15, intron 20 of 21) -5555 ENSMUSG00000091509.7 ENSMUSG00000091509 ENSMUST00000164319 Gm17066 processed_transcript Interval_102974 chr3 33918357 33919214 + 0 NA Intergenic Intergenic -21201 ENSMUSG00000105475.1 ENSMUSG00000105475 ENSMUST00000197426 4930431L21Rik lincRNA Interval_103712 chr3 51860399 51861359 + 0 NA intron (ENSMUSG00000061143.15, intron 1 of 4) protein_coding-intron (ENSMUSG00000061143.15, intron 1 of 4) 7680 ENSMUSG00000103484.1 ENSMUSG00000103484 ENSMUST00000192390 Gm38000 TEC Interval_36778 chr12 53756127 53756333 + 0 NA intron (ENSMUSG00000021010.9, intron 3 of 10) protein_coding-intron (ENSMUSG00000021010.9, intron 4 of 11) 323162 ENSMUSG00000099407.1 ENSMUSG00000099407 ENSMUST00000185390 1700060O08Rik antisense Interval_143344 chr7 5972501 5972917 + 0 NA Intergenic Intergenic -5493 ENSMUSG00000092271.1 ENSMUSG00000092271 ENSMUST00000173862 Vmn1r-ps46 processed_pseudogene Interval_162133 chr8 125414694 125415679 + 0 NA Intergenic Intergenic 154622 ENSMUSG00000001995.9 ENSMUSG00000001995 ENSMUST00000212604 Sipa1l2 protein_coding Interval_117731 chr4 125895219 125895431 + 0 NA intron (ENSMUSG00000085562.7, intron 2 of 5) lincRNA-intron (ENSMUSG00000085562.7, intron 2 of 5) 27092 ENSMUSG00000085562.7 ENSMUSG00000085562 ENSMUST00000144539 2610028E06Rik lincRNA Interval_85999 chr19 34841955 34842413 + 0 NA intron (ENSMUSG00000033610.16, intron 1 of 6) protein_coding-intron (ENSMUSG00000033610.16, intron 1 of 6) -21411 ENSMUSG00000065594.1 ENSMUSG00000065594 ENSMUST00000083660 Mir107 miRNA Interval_10565 chr1 171902501 171902690 + 0 NA Intergenic Intergenic 6931 ENSMUSG00000073492.2 ENSMUSG00000073492 ENSMUST00000097466 Gm10521 protein_coding Interval_23434 chr11 22606635 22608393 + 0 NA Intergenic Intergenic -9894 ENSMUSG00000086256.1 ENSMUSG00000086256 ENSMUST00000142151 Gm12052 lincRNA Interval_64250 chr16 9772076 9772269 + 0 NA intron (ENSMUSG00000059003.12, intron 3 of 13) protein_coding-intron (ENSMUSG00000059003.12, intron 1 of 11) 222751 ENSMUSG00000059003.12 ENSMUSG00000059003 ENSMUST00000197242 Grin2a protein_coding Interval_69353 chr16 92412100 92412596 + 0 NA intron (ENSMUSG00000022951.16, intron 1 of 3) protein_coding-intron (ENSMUSG00000022951.16, intron 1 of 3) -12370 ENSMUSG00000022951.16 ENSMUSG00000022951 ENSMUST00000232457 Rcan1 protein_coding Interval_63273 chr15 100038193 100039338 + 0 NA exon (ENSMUSG00000023026.16, exon 1 of 38) protein_coding-exon (ENSMUSG00000023026.16, exon 1 of 38) 52992 ENSMUSG00000116021.1 ENSMUSG00000116021 ENSMUST00000230449 Gm49474 TEC Interval_112467 chr4 41416523 41417634 + 0 NA intron (ENSMUSG00000028438.16, intron 5 of 6) protein_coding-intron (ENSMUSG00000028438.16, intron 3 of 9) 45830 ENSMUSG00000028437.14 ENSMUSG00000028437 ENSMUST00000132235 Ubap1 protein_coding Interval_64505 chr16 12825701 12826619 + 0 NA intron (ENSMUSG00000101565.2, intron 3 of 4) lincRNA-intron (ENSMUSG00000101565.2, intron 3 of 4) 25581 ENSMUSG00000101565.2 ENSMUSG00000101565 ENSMUST00000190074 1700003L19Rik lincRNA Interval_36226 chr12 39995841 39996619 + 0 NA Intergenic Intergenic 41199 ENSMUSG00000047446.18 ENSMUSG00000047446 ENSMUST00000101472 Arl4a protein_coding Interval_18806 chr10 91027676 91028565 + 0 NA intron (ENSMUSG00000019979.12, intron 17 of 26) protein_coding-intron (ENSMUSG00000019979.12, intron 17 of 26) 22379 ENSMUSG00000087966.1 ENSMUSG00000087966 ENSMUST00000157341 Gm25390 snRNA Interval_100604 chr2 170418694 170418979 + 0 NA intron (ENSMUSG00000013523.13, intron 2 of 4) protein_coding-intron (ENSMUSG00000013523.13, intron 2 of 12) 13655 ENSMUSG00000086970.1 ENSMUSG00000086970 ENSMUST00000133586 Bcas1os1 antisense Interval_167594 chr9 70891063 70892000 + 0 NA intron (ENSMUSG00000032207.10, intron 1 of 8) protein_coding-intron (ENSMUSG00000032207.10, intron 1 of 8) 38955 ENSMUSG00000096160.2 ENSMUSG00000096160 ENSMUST00000179930 Gm3436 processed_pseudogene Interval_164845 chr9 42419741 42420250 + 0 NA intron (ENSMUSG00000037287.15, intron 7 of 7) protein_coding-intron (ENSMUSG00000037287.15, intron 7 of 7) -20268 ENSMUSG00000037705.13 ENSMUSG00000037705 ENSMUST00000160940 Tecta protein_coding Interval_132015 chr5 142296306 142297196 + 0 NA Intergenic Intergenic 13645 ENSMUSG00000097947.1 ENSMUSG00000097947 ENSMUST00000182990 Gm26970 processed_pseudogene Interval_90028 chr2 27395625 27396244 + 0 NA intron (ENSMUSG00000009621.18, intron 1 of 27) protein_coding-intron (ENSMUSG00000009621.18, intron 1 of 27) -5918 ENSMUSG00000076364.1 ENSMUSG00000076364 ENSMUST00000102409 Gm24049 miRNA Interval_167624 chr9 71231867 71232187 + 0 NA intron (ENSMUSG00000013584.5, intron 1 of 13) protein_coding-intron (ENSMUSG00000013584.5, intron 1 of 13) 16238 ENSMUSG00000013584.5 ENSMUSG00000013584 ENSMUST00000034723 Aldh1a2 protein_coding Interval_64894 chr16 17033458 17034764 + 0 NA intron (ENSMUSG00000063358.17, intron 6 of 8) protein_coding-intron (ENSMUSG00000063358.17, intron 6 of 8) -1227 ENSMUSG00000063358.17 ENSMUSG00000063358 ENSMUST00000232480 Mapk1 protein_coding Interval_17899 chr10 80675808 80677136 + 0 NA promoter-TSS (ENSMUSG00000020190.13) protein_coding-promoter-TSS (ENSMUSG00000020190.13) -179 ENSMUSG00000020190.13 ENSMUSG00000020190 ENSMUST00000199949 Mknk2 protein_coding Interval_12082 chr1 189640794 189641277 + 0 NA promoter-TSS (ENSMUSG00000103087.1) TEC-promoter-TSS (ENSMUSG00000103087.1) -801 ENSMUSG00000103087.1 ENSMUSG00000103087 ENSMUST00000192679 Gm38122 TEC Interval_94628 chr2 92820930 92821423 + 0 NA Intergenic Intergenic 52133 ENSMUSG00000082700.1 ENSMUSG00000082700 ENSMUST00000121350 Gm13792 processed_pseudogene Interval_45857 chr13 58589248 58589936 + 0 NA intron (ENSMUSG00000021553.14, intron 1 of 5) protein_coding-intron (ENSMUSG00000021553.14, intron 1 of 17) 21285 ENSMUSG00000021553.14 ENSMUSG00000021553 ENSMUST00000151675 Slc28a3 protein_coding Interval_121325 chr4 154985862 154986767 + 0 NA exon (ENSMUSG00000029055.17, exon 11 of 12) protein_coding-exon (ENSMUSG00000029055.17, exon 11 of 12) 16315 ENSMUSG00000029056.13 ENSMUSG00000029056 ENSMUST00000129386 Pank4 protein_coding Interval_139040 chr6 94499868 94500808 + 0 NA promoter-TSS (ENSMUSG00000045100.11) protein_coding-promoter-TSS (ENSMUSG00000045100.11) -211 ENSMUSG00000045100.11 ENSMUSG00000045100 ENSMUST00000203484 Slc25a26 protein_coding Interval_171215 chr9 115277765 115277962 + 0 NA intron (ENSMUSG00000032437.10, intron 2 of 15) protein_coding-intron (ENSMUSG00000032437.10, intron 2 of 15) 4118 ENSMUSG00000111564.1 ENSMUSG00000111564 ENSMUST00000214793 Stmn1-rs1 processed_pseudogene Interval_707 chr1 10048547 10049992 + 0 NA intron (ENSMUSG00000056763.16, intron 3 of 3) protein_coding-intron (ENSMUSG00000056763.16, intron 3 of 29) 8675 ENSMUSG00000102356.1 ENSMUSG00000102356 ENSMUST00000194474 1700047N06Rik TEC Interval_116474 chr4 114217555 114218745 + 0 NA intron (ENSMUSG00000057977.10, intron 3 of 6) protein_coding-intron (ENSMUSG00000057977.10, intron 2 of 3) -52274 ENSMUSG00000082825.1 ENSMUSG00000082825 ENSMUST00000119401 Gm15741 processed_pseudogene Interval_154039 chr8 12130587 12130973 + 0 NA Intergenic Intergenic -148039 ENSMUSG00000074473.1 ENSMUSG00000074473 ENSMUST00000098935 A230072I06Rik protein_coding Interval_106740 chr3 100246024 100246560 + 0 NA Intergenic Intergenic 45605 ENSMUSG00000027865.10 ENSMUSG00000027865 ENSMUST00000200036 Gdap2 protein_coding Interval_70191 chr17 6054941 6055718 + 0 NA intron (ENSMUSG00000015659.12, intron 11 of 16) protein_coding-intron (ENSMUSG00000015659.12, intron 10 of 15) -5274 ENSMUSG00000015659.12 ENSMUSG00000015659 ENSMUST00000139542 Serac1 protein_coding Interval_116918 chr4 118220971 118221717 + 0 NA intron (ENSMUSG00000033295.14, intron 11 of 24) protein_coding-intron (ENSMUSG00000033295.14, intron 20 of 32) -10780 ENSMUSG00000098596.1 ENSMUSG00000098596 ENSMUST00000184953 Mir7226 miRNA Interval_155184 chr8 27259629 27261677 + 0 NA intron (ENSMUSG00000031490.6, intron 1 of 2) protein_coding-intron (ENSMUSG00000031490.6, intron 1 of 2) -3761 ENSMUSG00000031490.6 ENSMUSG00000031490 ENSMUST00000210959 Eif4ebp1 protein_coding Interval_29691 chr11 86100403 86100616 + 0 NA intron (ENSMUSG00000034329.16, intron 16 of 19) protein_coding-intron (ENSMUSG00000034329.16, intron 16 of 19) -84820 ENSMUSG00000080823.1 ENSMUSG00000080823 ENSMUST00000121382 Atp5l-ps2 processed_pseudogene Interval_56019 chr14 104473197 104474219 + 0 NA Intergenic Intergenic -7783 ENSMUSG00000115384.1 ENSMUSG00000115384 ENSMUST00000226423 Gm49205 processed_pseudogene Interval_81022 chr18 53035475 53035898 + 0 NA Intergenic Intergenic 83137 ENSMUSG00000118195.1 ENSMUSG00000118195 ENSMUST00000235787 Gm8572 processed_pseudogene Interval_168753 chr9 86703835 86704397 + 0 NA TTS (ENSMUSG00000089373.1) snoRNA-TTS (ENSMUSG00000089373.1) 297 ENSMUSG00000089373.1 ENSMUSG00000089373 ENSMUST00000158748 Gm22138 snoRNA Interval_8672 chr1 146743360 146743553 + 0 NA intron (ENSMUSG00000035131.14, intron 4 of 7) protein_coding-intron (ENSMUSG00000035131.14, intron 4 of 7) 17875 ENSMUSG00000080078.2 ENSMUSG00000080078 ENSMUST00000116191 Gm15583 processed_pseudogene Interval_37589 chr12 70110717 70112612 + 0 NA promoter-TSS (ENSMUSG00000021068.17) protein_coding-promoter-TSS (ENSMUSG00000021068.17) -1910 ENSMUSG00000114099.1 ENSMUSG00000114099 ENSMUST00000221641 Gm48695 bidirectional_promoter_lncRNA Interval_13226 chr10 13219918 13220132 + 0 NA intron (ENSMUSG00000062866.16, intron 12 of 12) protein_coding-intron (ENSMUSG00000062866.16, intron 12 of 12) 14799 ENSMUSG00000112042.1 ENSMUSG00000112042 ENSMUST00000219030 Gm47402 processed_pseudogene Interval_67228 chr16 44579758 44580413 + 0 NA Intergenic Intergenic -21188 ENSMUSG00000022687.12 ENSMUSG00000022687 ENSMUST00000114634 Boc protein_coding Interval_15753 chr10 55986066 55986617 + 0 NA Intergenic Intergenic 115662 ENSMUSG00000112528.1 ENSMUSG00000112528 ENSMUST00000218919 Gm29794 processed_pseudogene Interval_81461 chr18 60901515 60902028 + 0 NA Intergenic Intergenic -10009 ENSMUSG00000036412.5 ENSMUSG00000036412 ENSMUST00000040359 Arsi protein_coding Interval_48764 chr13 102897957 102899610 + 0 NA intron (ENSMUSG00000034751.17, intron 3 of 27) protein_coding-intron (ENSMUSG00000034751.17, intron 2 of 27) 136348 ENSMUSG00000090329.1 ENSMUSG00000090329 ENSMUST00000170645 Gm17160 antisense Interval_14791 chr10 39926113 39927422 + 0 NA exon (ENSMUSG00000039339.4, exon 1 of 4) transcribed_unprocessed_pseudogene-exon (ENSMUSG00000039339.4, exon 1 of 4) 182 ENSMUSG00000039339.4 ENSMUSG00000039339 ENSMUST00000239105 Mfsd4b2 transcribed_unprocessed_pseudogene Interval_115854 chr4 105242794 105243281 + 0 NA Intergenic Intergenic 85690 ENSMUSG00000028517.8 ENSMUSG00000028517 ENSMUST00000064139 Plpp3 protein_coding Interval_62288 chr15 89468509 89468813 + 0 NA Intergenic Intergenic 5610 ENSMUSG00000022620.14 ENSMUSG00000022620 ENSMUST00000168052 Arsa protein_coding Interval_13481 chr10 18549347 18550584 + 0 NA Intergenic Intergenic -3901 ENSMUSG00000019853.6 ENSMUSG00000019853 ENSMUST00000214548 Hebp2 protein_coding Interval_158079 chr8 78589692 78591604 + 0 NA intron (ENSMUSG00000031684.11, intron 1 of 2) protein_coding-intron (ENSMUSG00000031684.11, intron 5 of 11) -13646 ENSMUSG00000110244.1 ENSMUSG00000110244 ENSMUST00000211775 Gm2253 processed_pseudogene Interval_34359 chr12 3599457 3600398 + 0 NA intron (ENSMUSG00000071454.13, intron 4 of 17) protein_coding-intron (ENSMUSG00000071454.13, intron 4 of 17) 27457 ENSMUSG00000071454.13 ENSMUSG00000071454 ENSMUST00000174293 Dtnb protein_coding Interval_172389 chrX 17127940 17128325 + 0 NA Intergenic Intergenic -123930 ENSMUSG00000081858.1 ENSMUSG00000081858 ENSMUST00000121680 Gm14514 processed_pseudogene Interval_68274 chr16 72027566 72029642 + 0 NA Intergenic Intergenic 149560 ENSMUSG00000116901.1 ENSMUSG00000116901 ENSMUST00000232427 Gm49667 processed_pseudogene Interval_95528 chr2 111582072 111582337 + 0 NA Intergenic Intergenic 11807 ENSMUSG00000096690.1 ENSMUSG00000096690 ENSMUST00000117697 Olfr1296-ps1 unprocessed_pseudogene Interval_79623 chr18 34056642 34056887 + 0 NA Intergenic Intergenic -3730 ENSMUSG00000117961.1 ENSMUSG00000117961 ENSMUST00000235466 Gm50265 lincRNA Interval_159521 chr8 95214957 95215567 + 0 NA Intergenic Intergenic 76952 ENSMUSG00000110475.1 ENSMUSG00000110475 ENSMUST00000212925 Gm31036 antisense Interval_76582 chr17 81683430 81684685 + 0 NA intron (ENSMUSG00000054640.15, intron 1 of 11) protein_coding-intron (ENSMUSG00000054640.15, intron 1 of 10) 54320 ENSMUSG00000054640.15 ENSMUSG00000054640 ENSMUST00000234923 Slc8a1 protein_coding Interval_46582 chr13 67375163 67376067 + 0 NA promoter-TSS (ENSMUSG00000078995.10) protein_coding-promoter-TSS (ENSMUSG00000078995.10) 98 ENSMUSG00000078995.10 ENSMUSG00000078995 ENSMUST00000225787 Zfp456 protein_coding Interval_139617 chr6 103306471 103307291 + 0 NA Intergenic Intergenic -26895 ENSMUSG00000108296.1 ENSMUSG00000108296 ENSMUST00000203805 Gm44295 processed_pseudogene Interval_24159 chr11 30798770 30799944 + 0 NA intron (ENSMUSG00000040850.17, intron 3 of 4) protein_coding-intron (ENSMUSG00000040850.17, intron 3 of 46) 23313 ENSMUSG00000086986.3 ENSMUSG00000086986 ENSMUST00000121892 Gm12103 processed_pseudogene Interval_33457 chr11 116643202 116644322 + 0 NA Intergenic Intergenic -9772 ENSMUSG00000075410.13 ENSMUSG00000075410 ENSMUST00000156088 Prcd protein_coding Interval_56693 chr14 121426941 121427269 + 0 NA Intergenic Intergenic 28657 ENSMUSG00000115123.1 ENSMUSG00000115123 ENSMUST00000227451 Gm33299 lincRNA Interval_14983 chr10 41684601 41685299 + 0 NA TTS (ENSMUSG00000111376.1) processed_pseudogene-TTS (ENSMUSG00000111376.1) 1106 ENSMUSG00000111376.1 ENSMUSG00000111376 ENSMUST00000214137 Gm47099 processed_pseudogene Interval_89929 chr2 26560874 26562113 + 0 NA Intergenic Intergenic 2868 ENSMUSG00000082864.1 ENSMUSG00000082864 ENSMUST00000121427 Gm13358 processed_pseudogene Interval_22744 chr11 14351318 14351583 + 0 NA Intergenic Intergenic -136163 ENSMUSG00000080734.1 ENSMUSG00000080734 ENSMUST00000120786 Gm12006 processed_pseudogene Interval_112994 chr4 46676604 46677112 + 0 NA TTS (ENSMUSG00000039809.10) protein_coding-TTS (ENSMUSG00000039809.10) -26649 ENSMUSG00000039813.14 ENSMUSG00000039813 ENSMUST00000107750 Tbc1d2 protein_coding Interval_40687 chr12 107286490 107286886 + 0 NA Intergenic Intergenic -80622 ENSMUSG00000082362.1 ENSMUSG00000082362 ENSMUST00000117317 Gm5187 processed_pseudogene Interval_66055 chr16 31290631 31292039 + 0 NA exon (ENSMUSG00000116617.1, exon 1 of 2) lincRNA-exon (ENSMUSG00000116617.1, exon 1 of 2) 561 ENSMUSG00000116617.1 ENSMUSG00000116617 ENSMUST00000232175 Gm49767 lincRNA Interval_89036 chr2 14862654 14863395 + 0 NA intron (ENSMUSG00000057914.15, intron 1 of 7) protein_coding-intron (ENSMUSG00000057914.15, intron 2 of 13) -11397 ENSMUSG00000057914.15 ENSMUSG00000057914 ENSMUST00000144423 Cacnb2 protein_coding Interval_83615 chr18 90585988 90587405 + 0 NA TTS (ENSMUSG00000109923.1) processed_pseudogene-TTS (ENSMUSG00000109923.1) 1224 ENSMUSG00000109923.1 ENSMUSG00000109923 ENSMUST00000210329 Gm20039 processed_pseudogene Interval_35045 chr12 16843430 16844422 + 0 NA TTS (ENSMUSG00000114018.1) lincRNA-TTS (ENSMUSG00000114018.1) 6955 ENSMUSG00000114018.1 ENSMUSG00000114018 ENSMUST00000221201 Gm36495 lincRNA Interval_135179 chr6 37299175 37300584 + 0 NA promoter-TSS (ENSMUSG00000038665.15) protein_coding-promoter-TSS (ENSMUSG00000038665.15) 305 ENSMUSG00000038665.15 ENSMUSG00000038665 ENSMUST00000136457 Dgki protein_coding Interval_55477 chr14 88091635 88091933 + 0 NA intron (ENSMUSG00000115527.1, intron 2 of 2) transcribed_processed_pseudogene-intron (ENSMUSG00000115527.1, intron 2 of 2) 5631 ENSMUSG00000115527.1 ENSMUSG00000115527 ENSMUST00000226632 Gm4355 transcribed_processed_pseudogene Interval_171500 chr9 118870687 118872237 + 0 NA promoter-TSS (ENSMUSG00000039115.13) protein_coding-promoter-TSS (ENSMUSG00000039115.13) -607 ENSMUSG00000039115.13 ENSMUSG00000039115 ENSMUST00000155437 Itga9 protein_coding Interval_139607 chr6 102737093 102738191 + 0 NA Intergenic Intergenic -56742 ENSMUSG00000098533.1 ENSMUSG00000098533 ENSMUST00000183546 Mir6373 miRNA Interval_57058 chr15 5193818 5194313 + 0 NA intron (ENSMUSG00000022151.16, intron 2 of 3) protein_coding-intron (ENSMUSG00000022151.16, intron 2 of 4) 7907 ENSMUSG00000022151.16 ENSMUSG00000022151 ENSMUST00000141167 Ttc33 protein_coding Interval_131956 chr5 141076388 141077045 + 0 NA Intergenic Intergenic -3715 ENSMUSG00000093344.1 ENSMUSG00000093344 ENSMUST00000175603 Gm26113 miRNA Interval_155718 chr8 36427681 36428070 + 0 NA Intergenic Intergenic -21631 ENSMUSG00000088051.1 ENSMUSG00000088051 ENSMUST00000157426 Gm26150 snRNA Interval_158554 chr8 84441474 84441734 + 0 NA intron (ENSMUSG00000034656.18, intron 3 of 48) protein_coding-intron (ENSMUSG00000034656.18, intron 1 of 46) -61023 ENSMUSG00000064392.1 ENSMUSG00000064392 ENSMUST00000082458 Gm23626 snoRNA Interval_103920 chr3 54998394 54998686 + 0 NA Intergenic Intergenic 56497 ENSMUSG00000027793.6 ENSMUSG00000027793 ENSMUST00000199352 Ccna1 protein_coding Interval_82204 chr18 69028985 69029866 + 0 NA Intergenic Intergenic -7152 ENSMUSG00000098366.1 ENSMUSG00000098366 ENSMUST00000184434 Mir145b miRNA Interval_13579 chr10 19907118 19907763 + 0 NA exon (ENSMUSG00000020003.16, exon 1 of 1) protein_coding-exon (ENSMUSG00000020003.16, exon 1 of 1) 211 ENSMUSG00000020003.16 ENSMUSG00000020003 ENSMUST00000214951 Pex7 protein_coding Interval_97271 chr2 132815625 132816636 + 0 NA promoter-TSS (ENSMUSG00000027353.14) protein_coding-promoter-TSS (ENSMUSG00000027353.14) -94 ENSMUSG00000027353.14 ENSMUSG00000027353 ENSMUST00000135685 Mcm8 protein_coding Interval_19060 chr10 94137509 94137749 + 0 NA intron (ENSMUSG00000020021.4, intron 2 of 3) protein_coding-intron (ENSMUSG00000020021.4, intron 18 of 20) -10394 ENSMUSG00000005897.14 ENSMUSG00000005897 ENSMUST00000099343 Nr2c1 protein_coding Interval_46942 chr13 73614642 73614991 + 0 NA TTS (ENSMUSG00000021610.8) protein_coding-TTS (ENSMUSG00000021610.8) -1988 ENSMUSG00000021610.8 ENSMUSG00000021610 ENSMUST00000221130 Clptm1l protein_coding Interval_3271 chr1 55362221 55364042 + 0 NA promoter-TSS (ENSMUSG00000025977.15) protein_coding-promoter-TSS (ENSMUSG00000025977.15) -2390 ENSMUSG00000025977.15 ENSMUSG00000025977 ENSMUST00000174065 Boll protein_coding Interval_86930 chr19 44970323 44971311 + 0 NA intron (ENSMUSG00000036097.8, intron 10 of 15) protein_coding-intron (ENSMUSG00000036097.8, intron 14 of 19) 13712 ENSMUSG00000118204.1 ENSMUSG00000118204 ENSMUST00000236202 4930414N06Rik antisense Interval_76640 chr17 83043066 83044542 + 0 NA intron (ENSMUSG00000117399.1, intron 2 of 3) processed_transcript-intron (ENSMUSG00000117399.1, intron 2 of 3) -25101 ENSMUSG00000100154.1 ENSMUSG00000100154 ENSMUST00000187700 Gm29052 lincRNA Interval_10828 chr1 175711941 175713505 + 0 NA intron (ENSMUSG00000026523.14, intron 2 of 9) protein_coding-intron (ENSMUSG00000026523.14, intron 2 of 27) 14130 ENSMUSG00000026523.14 ENSMUSG00000026523 ENSMUST00000194783 Wdr64 protein_coding Interval_142267 chr6 140279398 140279730 + 0 NA Intergenic Intergenic 16892 ENSMUSG00000107572.1 ENSMUSG00000107572 ENSMUST00000204425 Gm3961 TEC Interval_169599 chr9 99386209 99387699 + 0 NA TTS (ENSMUSG00000032470.17) protein_coding-TTS (ENSMUSG00000032470.17) 7741 ENSMUSG00000032470.17 ENSMUSG00000032470 ENSMUST00000123771 Mras protein_coding Interval_88109 chr19 59196052 59196901 + 0 NA Intergenic Intergenic 15821 ENSMUSG00000117834.1 ENSMUSG00000117834 ENSMUST00000236019 Gm50429 processed_pseudogene Interval_29688 chr11 86055730 86056576 + 0 NA Intergenic Intergenic 105658 ENSMUSG00000081632.1 ENSMUSG00000081632 ENSMUST00000118790 Gm11443 processed_pseudogene Interval_140792 chr6 121376196 121376614 + 0 NA exon (ENSMUSG00000040797.16, exon 14 of 14) protein_coding-exon (ENSMUSG00000040797.16, exon 14 of 14) 19585 ENSMUSG00000030109.15 ENSMUSG00000030109 ENSMUST00000170339 Slc6a12 protein_coding Interval_82575 chr18 75243614 75243817 + 0 NA intron (ENSMUSG00000035765.10, intron 16 of 16) protein_coding-intron (ENSMUSG00000035765.10, intron 16 of 16) 53602 ENSMUSG00000102047.1 ENSMUSG00000102047 ENSMUST00000186356 2010010A06Rik transcribed_processed_pseudogene Interval_23282 chr11 21151072 21152479 + 0 NA Intergenic Intergenic 46201 ENSMUSG00000088223.1 ENSMUSG00000088223 ENSMUST00000157598 Gm22600 misc_RNA Interval_96101 chr2 119767230 119768057 + 0 NA exon (ENSMUSG00000034032.15, exon 22 of 25) protein_coding-exon (ENSMUSG00000034032.15, exon 22 of 25) -9118 ENSMUSG00000027297.14 ENSMUSG00000027297 ENSMUST00000134295 Ltk protein_coding Interval_90712 chr2 32058863 32059138 + 0 NA intron (ENSMUSG00000050592.8, intron 3 of 5) protein_coding-intron (ENSMUSG00000050592.8, intron 3 of 5) 5911 ENSMUSG00000090157.7 ENSMUSG00000090157 ENSMUST00000156387 Gm16534 processed_transcript Interval_8754 chr1 150472707 150472912 + 0 NA Intergenic Intergenic -7211 ENSMUSG00000006014.16 ENSMUSG00000006014 ENSMUST00000159035 Prg4 protein_coding Interval_10188 chr1 166930372 166930880 + 0 NA Intergenic Intergenic 15732 ENSMUSG00000086925.1 ENSMUSG00000086925 ENSMUST00000145247 Gm6286 processed_pseudogene Interval_9576 chr1 159566173 159566415 + 0 NA intron (ENSMUSG00000015829.13, intron 1 of 1) protein_coding-intron (ENSMUSG00000015829.13, intron 1 of 22) -28854 ENSMUSG00000103225.1 ENSMUSG00000103225 ENSMUST00000194545 Gm37731 TEC Interval_7736 chr1 133346580 133348037 + 0 NA Intergenic Intergenic -4601 ENSMUSG00000070645.5 ENSMUSG00000070645 ENSMUST00000112287 Ren1 protein_coding Interval_30480 chr11 94633419 94634275 + 0 NA intron (ENSMUSG00000020869.8, intron 2 of 3) protein_coding-intron (ENSMUSG00000020869.8, intron 2 of 6) 4033 ENSMUSG00000020869.8 ENSMUSG00000020869 ENSMUST00000138782 Lrrc59 protein_coding Interval_53845 chr14 62686046 62686252 + 0 NA exon (ENSMUSG00000035161.7, exon 18 of 18) protein_coding-exon (ENSMUSG00000035161.7, exon 18 of 18) 17537 ENSMUSG00000089531.1 ENSMUSG00000089531 ENSMUST00000158906 Gm25162 snoRNA Interval_104762 chr3 71497301 71497633 + 0 NA Intergenic Intergenic -31798 ENSMUSG00000103396.1 ENSMUSG00000103396 ENSMUST00000194825 Gm38305 processed_pseudogene Interval_12155 chr1 190174470 190175616 + 0 NA intron (ENSMUSG00000079045.3, intron 1 of 1) antisense-intron (ENSMUSG00000079045.3, intron 1 of 1) -4363 ENSMUSG00000010175.13 ENSMUSG00000010175 ENSMUST00000177288 Prox1 protein_coding Interval_8359 chr1 137900535 137900851 + 0 NA TTS (ENSMUSG00000098243.3) processed_transcript-TTS (ENSMUSG00000098243.3) 2098 ENSMUSG00000098243.3 ENSMUSG00000098243 ENSMUST00000182127 Gm4258 processed_transcript Interval_109186 chr3 137757366 137757704 + 0 NA Intergenic Intergenic 26080 ENSMUSG00000099011.1 ENSMUSG00000099011 ENSMUST00000184334 Mir6380 miRNA Interval_70763 chr17 14226969 14227855 + 0 NA Intergenic Intergenic -22439 ENSMUSG00000117254.1 ENSMUSG00000117254 ENSMUST00000233271 Gm34567 lincRNA Interval_81006 chr18 52675427 52675619 + 0 NA Intergenic Intergenic -18167 ENSMUSG00000053624.4 ENSMUSG00000053624 ENSMUST00000066193 Gykl1 protein_coding Interval_10345 chr1 169768024 169768447 + 0 NA Intergenic Intergenic -20612 ENSMUSG00000038530.11 ENSMUSG00000038530 ENSMUST00000132567 Rgs4 protein_coding Interval_22250 chr11 8134182 8135935 + 0 NA Intergenic Intergenic -20964 ENSMUSG00000082459.1 ENSMUSG00000082459 ENSMUST00000122321 Gm11988 processed_pseudogene Interval_126432 chr5 88545229 88546586 + 0 NA promoter-TSS (ENSMUSG00000106322.1) processed_pseudogene-promoter-TSS (ENSMUSG00000106322.1) -751 ENSMUSG00000106322.1 ENSMUSG00000106322 ENSMUST00000196352 Gm43432 processed_pseudogene Interval_157761 chr8 72832872 72833662 + 0 NA intron (ENSMUSG00000004383.18, intron 13 of 15) protein_coding-intron (ENSMUSG00000004383.18, intron 12 of 14) -37780 ENSMUSG00000110563.1 ENSMUSG00000110563 ENSMUST00000212908 Gm45791 processed_pseudogene Interval_18972 chr10 93497304 93497705 + 0 NA exon (ENSMUSG00000020017.14, exon 10 of 19) protein_coding-exon (ENSMUSG00000020017.14, exon 10 of 19) -3621 ENSMUSG00000020017.14 ENSMUSG00000020017 ENSMUST00000152883 Hal protein_coding Interval_147220 chr7 64751493 64752460 + 0 NA intron (ENSMUSG00000030519.14, intron 11 of 11) protein_coding-intron (ENSMUSG00000030519.14, intron 14 of 14) 7393 ENSMUSG00000030519.14 ENSMUSG00000030519 ENSMUST00000206630 Apba2 protein_coding Interval_74264 chr17 47787692 47788700 + 0 NA intron (ENSMUSG00000023990.18, intron 1 of 2) protein_coding-intron (ENSMUSG00000023990.18, intron 4 of 7) 286 ENSMUSG00000023990.18 ENSMUSG00000023990 ENSMUST00000140715 Tfeb protein_coding Interval_36026 chr12 33386700 33386952 + 0 NA intron (ENSMUSG00000085664.1, intron 1 of 3) antisense-intron (ENSMUSG00000085664.1, intron 1 of 3) 7934 ENSMUSG00000085664.1 ENSMUSG00000085664 ENSMUST00000138617 Atxn7l1os2 antisense Interval_7879 chr1 134336459 134336763 + 0 NA Intergenic Intergenic 25330 ENSMUSG00000042305.12 ENSMUSG00000042305 ENSMUST00000185903 Tmem183a protein_coding Interval_143721 chr7 15921707 15923039 + 0 NA promoter-TSS (ENSMUSG00000041571.9) protein_coding-promoter-TSS (ENSMUSG00000041571.9) 29 ENSMUSG00000041571.9 ENSMUSG00000041571 ENSMUST00000044355 Selenow protein_coding Interval_145636 chr7 36619984 36620580 + 0 NA Intergenic Intergenic 51539 ENSMUSG00000101965.1 ENSMUSG00000101965 ENSMUST00000191121 Gm29129 lincRNA Interval_27545 chr11 68589096 68589686 + 0 NA intron (ENSMUSG00000045915.15, intron 3 of 6) protein_coding-intron (ENSMUSG00000045915.15, intron 3 of 5) 2370 ENSMUSG00000045915.15 ENSMUSG00000045915 ENSMUST00000102612 Ccdc42 protein_coding Interval_208 KQ030491.1 23179 23479 + 0 NA NA NA NA NA Interval_119123 chr4 135686146 135687074 + 0 NA intron (ENSMUSG00000062157.6, intron 1 of 6) protein_coding-intron (ENSMUSG00000062157.6, intron 1 of 6) 323 ENSMUSG00000062157.6 ENSMUSG00000062157 ENSMUST00000074408 Ifnlr1 protein_coding Interval_2305 chr1 37931694 37932110 + 0 NA Intergenic Intergenic -1694 ENSMUSG00000087374.1 ENSMUSG00000087374 ENSMUST00000129513 Gm15457 antisense Interval_174019 chrX 129781957 129782389 + 0 NA intron (ENSMUSG00000034480.18, intron 1 of 2) protein_coding-intron (ENSMUSG00000034480.18, intron 1 of 26) 32431 ENSMUSG00000034480.18 ENSMUSG00000034480 ENSMUST00000133457 Diaph2 protein_coding Interval_60248 chr15 69098023 69098339 + 0 NA intron (ENSMUSG00000022332.8, intron 10 of 10) protein_coding-intron (ENSMUSG00000022332.8, intron 9 of 9) 136818 ENSMUSG00000115935.1 ENSMUSG00000115935 ENSMUST00000229754 4930573C08Rik TEC Interval_150710 chr7 113652825 113653717 + 0 NA Intergenic Intergenic 13745 ENSMUSG00000089467.1 ENSMUSG00000089467 ENSMUST00000158842 Gm23700 miRNA Interval_113507 chr4 55398072 55399490 + 0 NA Intergenic Intergenic -6080 ENSMUSG00000084144.1 ENSMUSG00000084144 ENSMUST00000120819 Gm12516 processed_pseudogene Interval_53064 chr14 54148880 54149234 + 0 NA TTS (ENSMUSG00000104876.1) TR_C_gene-TTS (ENSMUSG00000104876.1) 237 ENSMUSG00000076873.2 ENSMUSG00000076873 ENSMUST00000103685 Trdv5 TR_V_gene Interval_145700 chr7 37509748 37510017 + 0 NA intron (ENSMUSG00000043456.17, intron 1 of 3) protein_coding-intron (ENSMUSG00000043456.17, intron 4 of 5) 7972 ENSMUSG00000108330.1 ENSMUSG00000108330 ENSMUST00000205702 Gm44882 TEC Interval_147175 chr7 64053455 64054395 + 0 NA Intergenic Intergenic -3677 ENSMUSG00000108620.1 ENSMUSG00000108620 ENSMUST00000206468 Gm20670 lincRNA Interval_162095 chr8 125051901 125052217 + 0 NA Intergenic Intergenic -11956 ENSMUSG00000080516.1 ENSMUSG00000080516 ENSMUST00000116866 Gm22197 miRNA Interval_88383 chr2 4596607 4597558 + 0 NA intron (ENSMUSG00000026657.17, intron 18 of 24) protein_coding-intron (ENSMUSG00000026657.17, intron 17 of 23) -9795 ENSMUSG00000086018.7 ENSMUSG00000086018 ENSMUST00000137801 Gm13179 antisense Interval_79277 chr18 29553489 29554213 + 0 NA Intergenic Intergenic -57435 ENSMUSG00000117618.1 ENSMUSG00000117618 ENSMUST00000234290 4930578E11Rik lincRNA Interval_48323 chr13 98184908 98185184 + 0 NA intron (ENSMUSG00000021662.11, intron 1 of 34) protein_coding-intron (ENSMUSG00000021662.11, intron 1 of 35) 69111 ENSMUSG00000041747.3 ENSMUSG00000041747 ENSMUST00000224842 Utp15 protein_coding Interval_55556 chr14 91976338 91976649 + 0 NA Intergenic Intergenic -257012 ENSMUSG00000115308.1 ENSMUSG00000115308 ENSMUST00000228682 Gm48944 processed_pseudogene Interval_95917 chr2 118383251 118384926 + 0 NA Intergenic Intergenic -10669 ENSMUSG00000040133.2 ENSMUSG00000040133 ENSMUST00000039160 Gpr176 protein_coding Interval_148010 chr7 77922195 77922678 + 0 NA Intergenic Intergenic -12116 ENSMUSG00000064940.1 ENSMUSG00000064940 ENSMUST00000083006 Gm23239 snRNA Interval_146025 chr7 43275911 43277816 + 0 NA Intergenic Intergenic 36431 ENSMUSG00000012640.16 ENSMUSG00000012640 ENSMUST00000135130 Zfp715 protein_coding Interval_60995 chr15 78583357 78583633 + 0 NA Intergenic Intergenic -1879 ENSMUSG00000116097.1 ENSMUSG00000116097 ENSMUST00000229702 Gm36738 lincRNA Interval_152615 chr7 135376890 135377447 + 0 NA Intergenic Intergenic -19167 ENSMUSG00000073803.3 ENSMUSG00000073803 ENSMUST00000097982 4930544L04Rik TEC Interval_55739 chr14 99448717 99449539 + 0 NA Intergenic Intergenic 7471 ENSMUSG00000115178.1 ENSMUSG00000115178 ENSMUST00000227904 Gm49220 processed_pseudogene Interval_114096 chr4 63417460 63417731 + 0 NA intron (ENSMUSG00000039137.18, intron 4 of 6) protein_coding-intron (ENSMUSG00000039137.18, intron 9 of 11) 15727 ENSMUSG00000039137.18 ENSMUSG00000039137 ENSMUST00000140720 Whrn protein_coding Interval_112931 chr4 46144278 46144810 + 0 NA intron (ENSMUSG00000028330.8, intron 1 of 22) protein_coding-intron (ENSMUSG00000028330.8, intron 1 of 22) -6131 ENSMUSG00000035495.15 ENSMUSG00000035495 ENSMUST00000156021 Tstd2 protein_coding Interval_122439 chr5 22660690 22661258 + 0 NA intron (ENSMUSG00000097207.7, intron 3 of 4) lincRNA-intron (ENSMUSG00000097207.7, intron 3 of 4) -15791 ENSMUSG00000092704.1 ENSMUSG00000092704 ENSMUST00000174963 Gm24512 snRNA Interval_130815 chr5 130904454 130904649 + 0 NA intron (ENSMUSG00000034040.16, intron 7 of 10) protein_coding-intron (ENSMUSG00000034040.16, intron 7 of 10) -5938 ENSMUSG00000107207.1 ENSMUSG00000107207 ENSMUST00000201486 Gm42897 TEC Interval_172997 chrX 60868148 60869116 + 0 NA Intergenic Intergenic 24798 ENSMUSG00000045179.9 ENSMUSG00000045179 ENSMUST00000135107 Sox3 protein_coding Interval_161857 chr8 123243006 123243632 + 0 NA TTS (ENSMUSG00000097637.1) antisense-TTS (ENSMUSG00000097637.1) -7093 ENSMUSG00000033594.11 ENSMUSG00000033594 ENSMUST00000212818 Spata2l protein_coding Interval_146630 chr7 48893798 48894386 + 0 NA intron (ENSMUSG00000110093.1, intron 2 of 2) lincRNA-intron (ENSMUSG00000110093.1, intron 2 of 2) 6862 ENSMUSG00000085995.2 ENSMUSG00000085995 ENSMUST00000208790 Gm2788 processed_transcript Interval_163007 chr9 14477042 14477244 + 0 NA intron (ENSMUSG00000053914.9, intron 1 of 1) protein_coding-intron (ENSMUSG00000053914.9, intron 1 of 1) 23257 ENSMUSG00000053914.9 ENSMUSG00000053914 ENSMUST00000115647 Kdm4d protein_coding Interval_122200 chr5 19403983 19405311 + 0 NA intron (ENSMUSG00000040003.18, intron 1 of 2) protein_coding-intron (ENSMUSG00000040003.18, intron 1 of 22) 101476 ENSMUSG00000106204.1 ENSMUSG00000106204 ENSMUST00000197169 Gm21009 processed_pseudogene Interval_51277 chr14 25701323 25701522 + 0 NA promoter-TSS (ENSMUSG00000114922.1) antisense-promoter-TSS (ENSMUSG00000114922.1) -140 ENSMUSG00000114922.1 ENSMUSG00000114922 ENSMUST00000224137 Ppifos antisense Interval_135221 chr6 37631546 37632182 + 0 NA Intergenic Intergenic 55331 ENSMUSG00000107035.1 ENSMUSG00000107035 ENSMUST00000201305 Ybx1-ps2 processed_pseudogene Interval_11375 chr1 181352077 181354217 + 0 NA promoter-TSS (ENSMUSG00000026514.14) protein_coding-promoter-TSS (ENSMUSG00000026514.14) -279 ENSMUSG00000026514.14 ENSMUSG00000026514 ENSMUST00000209607 Cnih3 protein_coding Interval_24571 chr11 34704470 34705414 + 0 NA intron (ENSMUSG00000020143.15, intron 13 of 26) protein_coding-intron (ENSMUSG00000020143.15, intron 13 of 51) 119009 ENSMUSG00000069910.2 ENSMUSG00000069910 ENSMUST00000148387 Spdl1 protein_coding Interval_36606 chr12 51368367 51370674 + 0 NA intron (ENSMUSG00000035293.13, intron 12 of 13) protein_coding-intron (ENSMUSG00000035293.13, intron 13 of 14) -1155 ENSMUSG00000035293.13 ENSMUSG00000035293 ENSMUST00000152236 G2e3 protein_coding Interval_52216 chr14 40726974 40727266 + 0 NA Intergenic Intergenic -20107 ENSMUSG00000114933.1 ENSMUSG00000114933 ENSMUST00000225171 Gm48040 processed_pseudogene Interval_72828 chr17 32430826 32431076 + 0 NA Intergenic Intergenic -9976 ENSMUSG00000079563.10 ENSMUSG00000079563 ENSMUST00000236703 Pglyrp2 protein_coding Interval_8632 chr1 145113096 145113506 + 0 NA Intergenic Intergenic 52642 ENSMUSG00000099617.1 ENSMUSG00000099617 ENSMUST00000187574 Gm6550 processed_pseudogene Interval_29925 chr11 87795799 87796201 + 0 NA TTS (ENSMUSG00000009350.13) protein_coding-TTS (ENSMUSG00000009350.13) 5144 ENSMUSG00000085872.1 ENSMUSG00000085872 ENSMUST00000130442 Gm11505 antisense Interval_124027 chr5 37374776 37375147 + 0 NA intron (ENSMUSG00000050248.11, intron 8 of 11) protein_coding-intron (ENSMUSG00000050248.11, intron 8 of 19) -14943 ENSMUSG00000050248.11 ENSMUSG00000050248 ENSMUST00000159854 Evc2 protein_coding Interval_150814 chr7 114903755 114905058 + 0 NA Intergenic Intergenic 23320 ENSMUSG00000046411.2 ENSMUSG00000046411 ENSMUST00000059737 Rps4l-ps processed_pseudogene Interval_105524 chr3 87256557 87257663 + 0 NA intron (ENSMUSG00000015852.13, intron 5 of 7) protein_coding-intron (ENSMUSG00000015852.13, intron 5 of 7) 6628 ENSMUSG00000015852.13 ENSMUSG00000015852 ENSMUST00000146512 Fcrls protein_coding Interval_2687 chr1 43460817 43461626 + 0 NA exon (ENSMUSG00000066877.11, exon 2 of 2) protein_coding-exon (ENSMUSG00000066877.11, exon 2 of 2) -27226 ENSMUSG00000103422.1 ENSMUSG00000103422 ENSMUST00000194710 Gm37536 TEC Interval_22780 chr11 15411576 15411876 + 0 NA promoter-TSS (ENSMUSG00000064746.1) snRNA-promoter-TSS (ENSMUSG00000064746.1) -574 ENSMUSG00000064746.1 ENSMUSG00000064746 ENSMUST00000082812 Gm24707 snRNA Interval_151972 chr7 127895169 127896682 + 0 NA promoter-TSS (ENSMUSG00000096145.2) protein_coding-promoter-TSS (ENSMUSG00000096145.2) -471 ENSMUSG00000030804.8 ENSMUSG00000030804 ENSMUST00000126662 Gm21974 protein_coding Interval_113088 chr4 47899907 47900102 + 0 NA intron (ENSMUSG00000102450.1, intron 1 of 3) TEC-intron (ENSMUSG00000102450.1, intron 1 of 3) -20751 ENSMUSG00000089349.1 ENSMUSG00000089349 ENSMUST00000158724 Gm22670 snoRNA Interval_91701 chr2 48423569 48424410 + 0 NA intron (ENSMUSG00000086353.1, intron 1 of 5) lincRNA-intron (ENSMUSG00000086353.1, intron 1 of 5) 33256 ENSMUSG00000086353.1 ENSMUSG00000086353 ENSMUST00000127672 Gm13481 lincRNA Interval_73326 chr17 36224598 36225695 + 0 NA promoter-TSS (ENSMUSG00000101932.1) processed_pseudogene-promoter-TSS (ENSMUSG00000101932.1) -877 ENSMUSG00000101932.1 ENSMUSG00000101932 ENSMUST00000174543 Gm10074 processed_pseudogene Interval_107772 chr3 113834135 113834357 + 0 NA Intergenic Intergenic -20490 ENSMUSG00000106084.1 ENSMUSG00000106084 ENSMUST00000197877 Gm18163 processed_pseudogene Interval_154791 chr8 23398242 23400151 + 0 NA Intergenic Intergenic -12306 ENSMUSG00000031548.7 ENSMUSG00000031548 ENSMUST00000033952 Sfrp1 protein_coding Interval_167938 chr9 74760101 74760447 + 0 NA Intergenic Intergenic -21796 ENSMUSG00000088635.1 ENSMUSG00000088635 ENSMUST00000158010 Gm22315 snoRNA Interval_21938 chr11 5304326 5304608 + 0 NA intron (ENSMUSG00000041961.14, intron 3 of 8) protein_coding-intron (ENSMUSG00000041961.14, intron 2 of 8) 30382 ENSMUSG00000118486.1 ENSMUSG00000118486 ENSMUST00000238466 Gm30172 unitary_pseudogene Interval_152124 chr7 129674859 129675319 + 0 NA intron (ENSMUSG00000108481.1, intron 2 of 2) sense_intronic-intron (ENSMUSG00000108481.1, intron 2 of 2) 7684 ENSMUSG00000108481.1 ENSMUSG00000108481 ENSMUST00000205836 Gm33248 sense_intronic Interval_101450 chr2 181502776 181503222 + 0 NA TTS (ENSMUSG00000000827.18) protein_coding-TTS (ENSMUSG00000000827.18) 5816 ENSMUSG00000000827.18 ENSMUSG00000000827 ENSMUST00000130261 Tpd52l2 protein_coding Interval_161637 chr8 121717627 121719370 + 0 NA intron (ENSMUSG00000092329.1, intron 1 of 15) protein_coding-intron (ENSMUSG00000092329.1, intron 1 of 15) -34978 ENSMUSG00000025318.13 ENSMUSG00000025318 ENSMUST00000172209 Jph3 protein_coding Interval_112597 chr4 43478033 43479982 + 0 NA Intergenic Intergenic 4215 ENSMUSG00000028460.6 ENSMUSG00000028460 ENSMUST00000123526 Sit1 protein_coding Interval_61410 chr15 81424944 81425693 + 0 NA intron (ENSMUSG00000022401.12, intron 3 of 10) protein_coding-intron (ENSMUSG00000022401.12, intron 2 of 8) -6130 ENSMUSG00000091492.1 ENSMUSG00000091492 ENSMUST00000133273 Gm17025 antisense Interval_11281 chr1 180684055 180684234 + 0 NA intron (ENSMUSG00000058729.13, intron 1 of 3) protein_coding-intron (ENSMUSG00000058729.13, intron 12 of 14) 3257 ENSMUSG00000058729.13 ENSMUSG00000058729 ENSMUST00000194847 Lin9 protein_coding Interval_23313 chr11 21306542 21308399 + 0 NA TTS (ENSMUSG00000020128.15) protein_coding-TTS (ENSMUSG00000020128.15) -5035 ENSMUSG00000020128.15 ENSMUSG00000020128 ENSMUST00000153159 Vps54 protein_coding Interval_11389 chr1 181522521 181522880 + 0 NA Intergenic Intergenic -11249 ENSMUSG00000050625.4 ENSMUSG00000050625 ENSMUST00000058825 Ccdc121 protein_coding Interval_24179 chr11 30985917 30987208 + 0 NA promoter-TSS (ENSMUSG00000020309.6) protein_coding-promoter-TSS (ENSMUSG00000020309.6) -212 ENSMUSG00000020309.6 ENSMUSG00000020309 ENSMUST00000020553 Chac2 protein_coding Interval_107780 chr3 114031826 114032555 + 0 NA exon (ENSMUSG00000027966.20, exon 1 of 1) protein_coding-exon (ENSMUSG00000027966.20, exon 1 of 1) -97199 ENSMUSG00000027966.20 ENSMUSG00000027966 ENSMUST00000184978 Col11a1 protein_coding Interval_35060 chr12 16958734 16959114 + 0 NA intron (ENSMUSG00000020580.10, intron 16 of 32) protein_coding-intron (ENSMUSG00000020580.10, intron 16 of 32) -14157 ENSMUSG00000020580.10 ENSMUSG00000020580 ENSMUST00000221463 Rock2 protein_coding Interval_41111 chr12 111257485 111257799 + 0 NA intron (ENSMUSG00000021277.16, intron 4 of 5) protein_coding-intron (ENSMUSG00000021277.16, intron 10 of 11) 9159 ENSMUSG00000021277.16 ENSMUSG00000021277 ENSMUST00000143395 Traf3 protein_coding Interval_62398 chr15 91779256 91781460 + 0 NA promoter-TSS (ENSMUSG00000036273.15) protein_coding-promoter-TSS (ENSMUSG00000036273.15) -34270 ENSMUSG00000036273.15 ENSMUSG00000036273 ENSMUST00000172797 Lrrk2 protein_coding Interval_99105 chr2 157235767 157236828 + 0 NA intron (ENSMUSG00000074627.11, intron 10 of 24) protein_coding-intron (ENSMUSG00000074627.11, intron 10 of 24) -31763 ENSMUSG00000027641.13 ENSMUSG00000027641 ENSMUST00000141296 Rbl1 protein_coding Interval_25071 chr11 43645406 43645643 + 0 NA Intergenic Intergenic -25277 ENSMUSG00000083662.1 ENSMUSG00000083662 ENSMUST00000122465 Gm12152 processed_pseudogene Interval_37121 chr12 58607115 58607883 + 0 NA Intergenic Intergenic -156407 ENSMUSG00000112487.1 ENSMUSG00000112487 ENSMUST00000219517 Gm18873 processed_pseudogene Interval_117665 chr4 125439717 125440889 + 0 NA Intergenic Intergenic -50397 ENSMUSG00000001985.9 ENSMUSG00000001985 ENSMUST00000030676 Grik3 protein_coding Interval_48151 chr13 96693426 96694666 + 0 NA Intergenic Intergenic -15923 ENSMUSG00000113351.1 ENSMUSG00000113351 ENSMUST00000221591 Gm48575 processed_pseudogene Interval_108875 chr3 132903218 132903826 + 0 NA intron (ENSMUSG00000040998.18, intron 2 of 2) protein_coding-intron (ENSMUSG00000040998.18, intron 9 of 12) 2837 ENSMUSG00000040998.18 ENSMUSG00000040998 ENSMUST00000132732 Npnt protein_coding Interval_93171 chr2 70814580 70815001 + 0 NA intron (ENSMUSG00000041997.16, intron 1 of 21) protein_coding-intron (ENSMUSG00000041997.16, intron 1 of 19) -41899 ENSMUSG00000082303.1 ENSMUSG00000082303 ENSMUST00000120668 Gm13633 processed_pseudogene Interval_150695 chr7 113464633 113465228 + 0 NA Intergenic Intergenic -16011 ENSMUSG00000109779.1 ENSMUSG00000109779 ENSMUST00000209594 Gm18780 processed_pseudogene Interval_162041 chr8 124654269 124654479 + 0 NA intron (ENSMUSG00000031983.7, intron 1 of 3) protein_coding-intron (ENSMUSG00000031983.7, intron 1 of 3) 8995 ENSMUSG00000031983.7 ENSMUSG00000031983 ENSMUST00000034464 2310022B05Rik protein_coding Interval_122102 chr5 17038967 17039941 + 0 NA Intergenic Intergenic 58418 ENSMUSG00000105706.1 ENSMUSG00000105706 ENSMUST00000197388 Gm42855 processed_pseudogene Interval_7310 chr1 128772623 128773860 + 0 NA exon (ENSMUSG00000097283.1, exon 1 of 2) lincRNA-exon (ENSMUSG00000097283.1, exon 1 of 2) 1180 ENSMUSG00000097283.1 ENSMUSG00000097283 ENSMUST00000181951 Gm26686 lincRNA Interval_57322 chr15 8733700 8734215 + 0 NA Intergenic Intergenic -23548 ENSMUSG00000005360.14 ENSMUSG00000005360 ENSMUST00000126747 Slc1a3 protein_coding Interval_101093 chr2 177896399 177898471 + 0 NA intron (ENSMUSG00000074521.9, intron 1 of 2) protein_coding-intron (ENSMUSG00000074521.9, intron 1 of 2) 339 ENSMUSG00000074521.9 ENSMUSG00000074521 ENSMUST00000099001 Gm14327 protein_coding Interval_2854 chr1 46649440 46651012 + 0 NA TTS (ENSMUSG00000101337.6) protein_coding-TTS (ENSMUSG00000101337.6) 9995 ENSMUSG00000101337.6 ENSMUSG00000101337 ENSMUST00000187094 Dnah7c protein_coding Interval_85042 chr19 21754814 21755408 + 0 NA Intergenic Intergenic -23277 ENSMUSG00000024754.13 ENSMUSG00000024754 ENSMUST00000238079 Cemip2 protein_coding Interval_56668 chr14 121282923 121283602 + 0 NA exon (ENSMUSG00000025555.14, exon 27 of 27) protein_coding-exon (ENSMUSG00000025555.14, exon 27 of 27) 34556 ENSMUSG00000085133.2 ENSMUSG00000085133 ENSMUST00000130256 B930095G15Rik sense_intronic Interval_88886 chr2 12070311 12070684 + 0 NA Intergenic Intergenic 13495 ENSMUSG00000080801.2 ENSMUSG00000080801 ENSMUST00000120962 Gm13310 processed_pseudogene Interval_94927 chr2 101871182 101871515 + 0 NA promoter-TSS (ENSMUSG00000087465.1) lincRNA-promoter-TSS (ENSMUSG00000087465.1) -827 ENSMUSG00000087465.1 ENSMUSG00000087465 ENSMUST00000140009 Gm13905 lincRNA Interval_78130 chr18 8934582 8935337 + 0 NA Intergenic Intergenic 6724 ENSMUSG00000103172.1 ENSMUSG00000103172 ENSMUST00000195097 Gm37148 TEC Interval_108439 chr3 127218913 127219232 + 0 NA intron (ENSMUSG00000032826.19, intron 1 of 31) protein_coding-intron (ENSMUSG00000032826.19, intron 3 of 14) 24703 ENSMUSG00000105733.1 ENSMUSG00000105733 ENSMUST00000197913 Gm42973 TEC Interval_35030 chr12 16759343 16761184 + 0 NA intron (ENSMUSG00000036523.16, intron 1 of 34) protein_coding-intron (ENSMUSG00000036523.16, intron 1 of 3) 6960 ENSMUSG00000105567.1 ENSMUSG00000105567 ENSMUST00000199946 Gm44305 miRNA Interval_96544 chr2 125563606 125564656 + 0 NA exon (ENSMUSG00000068394.4, exon 28 of 28) protein_coding-exon (ENSMUSG00000068394.4, exon 28 of 28) -58059 ENSMUSG00000027204.13 ENSMUSG00000027204 ENSMUST00000148272 Fbn1 protein_coding Interval_119930 chr4 140992249 140992457 + 0 NA exon (ENSMUSG00000036622.15, exon 3 of 29) protein_coding-exon (ENSMUSG00000036622.15, exon 3 of 29) -8358 ENSMUSG00000036622.15 ENSMUSG00000036622 ENSMUST00000137630 Atp13a2 protein_coding Interval_106931 chr3 102022338 102022887 + 0 NA Intergenic Intergenic 12457 ENSMUSG00000048540.8 ENSMUSG00000048540 ENSMUST00000198675 Nhlh2 protein_coding Interval_148299 chr7 80368573 80368887 + 0 NA TTS (ENSMUSG00000038886.10) protein_coding-TTS (ENSMUSG00000038886.10) -8819 ENSMUSG00000038886.10 ENSMUSG00000038886 ENSMUST00000205436 Man2a2 protein_coding Interval_171271 chr9 115862653 115863642 + 0 NA Intergenic Intergenic -73995 ENSMUSG00000056880.12 ENSMUSG00000056880 ENSMUST00000121770 Gadl1 protein_coding Interval_88170 chr19 60226169 60227121 + 0 NA promoter-TSS (ENSMUSG00000057858.8) protein_coding-promoter-TSS (ENSMUSG00000057858.8) 52 ENSMUSG00000057858.8 ENSMUSG00000057858 ENSMUST00000237120 Fam204a protein_coding Interval_165760 chr9 52249301 52249787 + 0 NA Intergenic Intergenic -41655 ENSMUSG00000077796.1 ENSMUSG00000077796 ENSMUST00000104608 Gm25562 snoRNA Interval_115921 chr4 106302733 106303244 + 0 NA Intergenic Intergenic -8595 ENSMUSG00000104192.1 ENSMUSG00000104192 ENSMUST00000195679 Gm37253 TEC Interval_80109 chr18 37681876 37682624 + 0 NA exon (ENSMUSG00000103037.1, exon 1 of 4) protein_coding-exon (ENSMUSG00000103037.1, exon 1 of 4) 1993 ENSMUSG00000103037.1 ENSMUSG00000103037 ENSMUST00000195624 Pcdhgb1 protein_coding Interval_114083 chr4 63268385 63268905 + 0 NA intron (ENSMUSG00000045672.15, intron 11 of 57) protein_coding-intron (ENSMUSG00000045672.15, intron 14 of 60) 11794 ENSMUSG00000070102.1 ENSMUSG00000070102 ENSMUST00000093594 Mir455 miRNA Interval_70384 chr17 9628914 9629429 + 0 NA Intergenic Intergenic 40546 ENSMUSG00000046173.3 ENSMUSG00000046173 ENSMUST00000057190 Pabpc6 protein_coding Interval_153317 chr7 143583954 143584595 + 0 NA intron (ENSMUSG00000010755.17, intron 6 of 21) protein_coding-intron (ENSMUSG00000010755.17, intron 7 of 22) -12165 ENSMUSG00000082561.1 ENSMUSG00000082561 ENSMUST00000121587 Gm15580 processed_pseudogene Interval_167998 chr9 75333924 75334847 + 0 NA intron (ENSMUSG00000032192.9, intron 2 of 6) protein_coding-intron (ENSMUSG00000032192.9, intron 6 of 11) 2502 ENSMUSG00000032192.9 ENSMUSG00000032192 ENSMUST00000215891 Gnb5 protein_coding Interval_45547 chr13 55756577 55757963 + 0 NA intron (ENSMUSG00000021496.12, intron 2 of 3) protein_coding-intron (ENSMUSG00000021496.12, intron 2 of 3) 27224 ENSMUSG00000069223.10 ENSMUSG00000069223 ENSMUST00000152292 4930451E10Rik antisense Interval_104788 chr3 73301592 73301822 + 0 NA intron (ENSMUSG00000103428.1, intron 2 of 4) lincRNA-intron (ENSMUSG00000103428.1, intron 2 of 4) -27727 ENSMUSG00000102820.1 ENSMUSG00000102820 ENSMUST00000192351 Gm38353 lincRNA Interval_108947 chr3 133543301 133545326 + 0 NA promoter-TSS (ENSMUSG00000040943.12) protein_coding-promoter-TSS (ENSMUSG00000040943.12) -784 ENSMUSG00000105085.1 ENSMUSG00000105085 ENSMUST00000199268 Gm42567 antisense Interval_41591 chr12 116619438 116620634 + 0 NA intron (ENSMUSG00000056553.14, intron 2 of 4) protein_coding-intron (ENSMUSG00000056553.14, intron 2 of 22) 22783 ENSMUSG00000101814.1 ENSMUSG00000101814 ENSMUST00000186869 Gm17807 processed_pseudogene Interval_174095 chrX 134673399 134674390 + 0 NA Intergenic Intergenic -7626 ENSMUSG00000082655.1 ENSMUSG00000082655 ENSMUST00000117957 Gm7857 processed_pseudogene Interval_8342 chr1 137526844 137527297 + 0 NA Intergenic Intergenic 4160 ENSMUSG00000103070.1 ENSMUSG00000103070 ENSMUST00000192122 Gm37903 TEC Interval_95438 chr2 109338725 109339233 + 0 NA intron (ENSMUSG00000027115.14, intron 16 of 16) protein_coding-intron (ENSMUSG00000027115.14, intron 16 of 16) 46956 ENSMUSG00000027115.14 ENSMUSG00000027115 ENSMUST00000162515 Kif18a protein_coding Interval_166793 chr9 62751286 62751563 + 0 NA intron (ENSMUSG00000032243.8, intron 10 of 27) protein_coding-intron (ENSMUSG00000032243.8, intron 10 of 29) -38480 ENSMUSG00000111537.1 ENSMUSG00000111537 ENSMUST00000214567 Gm7653 processed_pseudogene Interval_35558 chr12 24783731 24784813 + 0 NA Intergenic Intergenic 5099 ENSMUSG00000114084.1 ENSMUSG00000114084 ENSMUST00000223420 Gm48897 processed_pseudogene Interval_170504 chr9 108337974 108340539 + 0 NA promoter-TSS (ENSMUSG00000063856.7) protein_coding-promoter-TSS (ENSMUSG00000063856.7) -20 ENSMUSG00000063856.7 ENSMUSG00000063856 ENSMUST00000193987 Gpx1 protein_coding Interval_32969 chr11 113428781 113429009 + 0 NA intron (ENSMUSG00000041654.15, intron 5 of 5) protein_coding-intron (ENSMUSG00000041654.15, intron 6 of 10) -39082 ENSMUSG00000078251.2 ENSMUSG00000078251 ENSMUST00000105048 Gm16487 pseudogene Interval_42388 chr13 12565374 12566457 + 0 NA promoter-TSS (ENSMUSG00000057069.7) protein_coding-promoter-TSS (ENSMUSG00000057069.7) -543 ENSMUSG00000057069.7 ENSMUSG00000057069 ENSMUST00000221739 Ero1lb protein_coding Interval_109716 chr3 146250405 146250603 + 0 NA intron (ENSMUSG00000036832.5, intron 2 of 2) protein_coding-intron (ENSMUSG00000036832.5, intron 2 of 2) 29541 ENSMUSG00000036832.5 ENSMUSG00000036832 ENSMUST00000039164 Lpar3 protein_coding Interval_89609 chr2 23208139 23208348 + 0 NA intron (ENSMUSG00000026774.11, intron 1 of 9) protein_coding-intron (ENSMUSG00000026774.11, intron 1 of 10) 746 ENSMUSG00000026774.11 ENSMUSG00000026774 ENSMUST00000114505 Potegl protein_coding Interval_81799 chr18 64873534 64874255 + 0 NA Intergenic Intergenic 14597 ENSMUSG00000114210.2 ENSMUSG00000114210 ENSMUST00000224731 A330084C13Rik antisense Interval_31027 chr11 97787853 97788544 + 0 NA Intergenic Intergenic -5836 ENSMUSG00000071415.6 ENSMUSG00000071415 ENSMUST00000128801 Rpl23 protein_coding Interval_44309 chr13 43540890 43541639 + 0 NA TTS (ENSMUSG00000021371.5) protein_coding-TTS (ENSMUSG00000021371.5) 11044 ENSMUSG00000112983.1 ENSMUSG00000112983 ENSMUST00000222336 Gm32939 lincRNA Interval_74165 chr17 46864133 46864332 + 0 NA Intergenic Intergenic -26452 ENSMUSG00000036430.8 ENSMUSG00000036430 ENSMUST00000040434 Tbcc protein_coding Interval_143735 chr7 15978305 15978505 + 0 NA exon (ENSMUSG00000070808.4, exon 4 of 8) protein_coding-exon (ENSMUSG00000070808.4, exon 4 of 8) 6522 ENSMUSG00000109984.1 ENSMUSG00000109984 ENSMUST00000210035 Gm38948 lincRNA Interval_122919 chr5 27349497 27350084 + 0 NA intron (ENSMUSG00000061576.15, intron 1 of 25) protein_coding-intron (ENSMUSG00000061576.15, intron 1 of 25) 131605 ENSMUSG00000106537.1 ENSMUSG00000106537 ENSMUST00000200263 Gm43502 TEC Interval_147706 chr7 72306033 72307196 + 0 NA promoter-TSS (ENSMUSG00000032776.9) protein_coding-promoter-TSS (ENSMUSG00000032776.9) -77254 ENSMUSG00000032776.9 ENSMUSG00000032776 ENSMUST00000206755 Mctp2 protein_coding Interval_61194 chr15 79906588 79907228 + 0 NA TTS (ENSMUSG00000009585.18) protein_coding-TTS (ENSMUSG00000009585.18) 6566 ENSMUSG00000009585.18 ENSMUSG00000009585 ENSMUST00000175827 Apobec3 protein_coding Interval_65723 chr16 26021687 26021925 + 0 NA intron (ENSMUSG00000038168.5, intron 1 of 14) protein_coding-intron (ENSMUSG00000038168.5, intron 1 of 14) 19462 ENSMUSG00000090203.2 ENSMUSG00000090203 ENSMUST00000159040 AU015336 sense_intronic Interval_37242 chr12 62659878 62660104 + 0 NA Intergenic Intergenic -27831 ENSMUSG00000091396.2 ENSMUSG00000091396 ENSMUST00000172433 Spanxn4 processed_pseudogene Interval_126886 chr5 96722583 96722875 + 0 NA intron (ENSMUSG00000034687.8, intron 47 of 73) protein_coding-intron (ENSMUSG00000034687.8, intron 47 of 73) 16635 ENSMUSG00000106526.1 ENSMUSG00000106526 ENSMUST00000200077 Gm42604 antisense Interval_160842 chr8 113581765 113583243 + 0 NA Intergenic Intergenic -53083 ENSMUSG00000078908.10 ENSMUSG00000078908 ENSMUST00000035777 Mon1b protein_coding Interval_149710 chr7 100842082 100843482 + 0 NA Intergenic Intergenic 12647 ENSMUSG00000008318.10 ENSMUSG00000008318 ENSMUST00000142885 Relt protein_coding Interval_45801 chr13 58170186 58170626 + 0 NA Intergenic Intergenic 11219 ENSMUSG00000005312.15 ENSMUSG00000005312 ENSMUST00000225645 Ubqln1 protein_coding Interval_81593 chr18 61952221 61953974 + 0 NA promoter-TSS (ENSMUSG00000045629.8) protein_coding-promoter-TSS (ENSMUSG00000045629.8) -17877 ENSMUSG00000104035.1 ENSMUSG00000104035 ENSMUST00000194401 Gm37774 TEC Interval_61795 chr15 84198981 84199914 + 0 NA promoter-TSS (ENSMUSG00000022437.7) protein_coding-promoter-TSS (ENSMUSG00000022437.7) -2395 ENSMUSG00000022437.7 ENSMUSG00000022437 ENSMUST00000229751 Samm50 protein_coding Interval_81195 chr18 56325957 56326353 + 0 NA Intergenic Intergenic 41303 ENSMUSG00000118137.1 ENSMUSG00000118137 ENSMUST00000236344 Gm50385 processed_pseudogene Interval_160084 chr8 106277699 106278860 + 0 NA intron (ENSMUSG00000031906.9, intron 2 of 8) protein_coding-intron (ENSMUSG00000031906.9, intron 2 of 8) 2699 ENSMUSG00000031906.9 ENSMUSG00000031906 ENSMUST00000212896 Smpd3 protein_coding Interval_15951 chr10 59577717 59578656 + 0 NA intron (ENSMUSG00000009647.13, intron 3 of 3) protein_coding-intron (ENSMUSG00000009647.13, intron 1 of 7) -37878 ENSMUSG00000071280.2 ENSMUSG00000071280 ENSMUST00000238281 Gm10322 antisense Interval_75422 chr17 66469765 66472304 + 0 NA Intergenic Intergenic 21180 ENSMUSG00000117003.1 ENSMUSG00000117003 ENSMUST00000233518 Gm49937 bidirectional_promoter_lncRNA Interval_39255 chr12 86216648 86217445 + 0 NA Intergenic Intergenic -44630 ENSMUSG00000021254.9 ENSMUSG00000021254 ENSMUST00000222299 Gpatch2l protein_coding Interval_96154 chr2 120128848 120129174 + 0 NA intron (ENSMUSG00000027293.13, intron 2 of 3) protein_coding-intron (ENSMUSG00000027293.13, intron 2 of 5) 8549 ENSMUSG00000027293.13 ENSMUSG00000027293 ENSMUST00000148073 Ehd4 protein_coding Interval_168162 chr9 77636408 77637368 + 0 NA intron (ENSMUSG00000044938.8, intron 1 of 2) protein_coding-intron (ENSMUSG00000044938.8, intron 1 of 2) 388 ENSMUSG00000044938.8 ENSMUSG00000044938 ENSMUST00000057781 Klhl31 protein_coding Interval_107083 chr3 103400783 103401094 + 0 NA Intergenic Intergenic 8005 ENSMUSG00000089029.1 ENSMUSG00000089029 ENSMUST00000158404 Gm25009 snoRNA Interval_18880 chr10 92162476 92163520 + 0 NA promoter-TSS (ENSMUSG00000112117.1) lincRNA-promoter-TSS (ENSMUSG00000112117.1) 1973 ENSMUSG00000112117.1 ENSMUSG00000112117 ENSMUST00000218314 Rmst lincRNA Interval_167539 chr9 70310433 70311109 + 0 NA intron (ENSMUSG00000032220.10, intron 5 of 28) protein_coding-intron (ENSMUSG00000032220.10, intron 4 of 27) 94982 ENSMUSG00000093763.1 ENSMUSG00000093763 ENSMUST00000176002 Mir5626 miRNA Interval_82594 chr18 75353595 75354200 + 0 NA Intergenic Intergenic 13191 ENSMUSG00000092569.1 ENSMUSG00000092569 ENSMUST00000174338 Gm20544 processed_transcript Interval_147481 chr7 67654297 67656010 + 0 NA promoter-TSS (ENSMUSG00000030555.16) protein_coding-promoter-TSS (ENSMUSG00000030555.16) -14899 ENSMUSG00000030555.16 ENSMUSG00000030555 ENSMUST00000154697 Ttc23 protein_coding Interval_102357 chr3 22138345 22138919 + 0 NA promoter-TSS (ENSMUSG00000027630.13) protein_coding-promoter-TSS (ENSMUSG00000027630.13) -57517 ENSMUSG00000103293.1 ENSMUSG00000103293 ENSMUST00000195073 Gm5842 processed_pseudogene Interval_25562 chr11 49776752 49777228 + 0 NA TTS (ENSMUSG00000081934.1) processed_pseudogene-TTS (ENSMUSG00000081934.1) 491 ENSMUSG00000081934.1 ENSMUSG00000081934 ENSMUST00000117250 Gm12193 processed_pseudogene Interval_96906 chr2 129393481 129393779 + 0 NA Intergenic Intergenic -14234 ENSMUSG00000081888.1 ENSMUSG00000081888 ENSMUST00000122326 Spcs2-ps unprocessed_pseudogene Interval_72778 chr17 32117655 32118883 + 0 NA intron (ENSMUSG00000097305.2, intron 1 of 1) antisense-intron (ENSMUSG00000097305.2, intron 1 of 1) 4858 ENSMUSG00000097305.2 ENSMUSG00000097305 ENSMUST00000236612 Gm17276 antisense Interval_167144 chr9 65629051 65631405 + 0 NA promoter-TSS (ENSMUSG00000032387.15) protein_coding-promoter-TSS (ENSMUSG00000032387.15) -28749 ENSMUSG00000032387.15 ENSMUSG00000032387 ENSMUST00000216769 Rbpms2 protein_coding Interval_140957 chr6 123041930 123043072 + 0 NA Intergenic Intergenic -7497 ENSMUSG00000030147.12 ENSMUSG00000030147 ENSMUST00000078559 Clec4b1 protein_coding Interval_19390 chr10 98875381 98875569 + 0 NA Intergenic Intergenic -115405 ENSMUSG00000019943.10 ENSMUSG00000019943 ENSMUST00000218419 Atp2b1 protein_coding Interval_1651 chr1 30803741 30805843 + 0 NA exon (ENSMUSG00000048874.15, exon 15 of 15) protein_coding-exon (ENSMUSG00000048874.15, exon 15 of 15) 5920 ENSMUSG00000048874.15 ENSMUSG00000048874 ENSMUST00000185604 Phf3 protein_coding Interval_28429 chr11 75819830 75820045 + 0 NA intron (ENSMUSG00000087059.7, intron 2 of 2) processed_transcript-intron (ENSMUSG00000087059.7, intron 2 of 4) -23888 ENSMUSG00000020848.7 ENSMUSG00000020848 ENSMUST00000021209 Doc2b protein_coding Interval_105651 chr3 88372758 88373226 + 0 NA promoter-TSS (ENSMUSG00000074489.9) protein_coding-promoter-TSS (ENSMUSG00000074489.9) -3031 ENSMUSG00000096792.2 ENSMUSG00000096792 ENSMUST00000179946 Gm21956 unprocessed_pseudogene Interval_36244 chr12 40241257 40241719 + 0 NA intron (ENSMUSG00000001627.12, intron 2 of 5) protein_coding-intron (ENSMUSG00000001627.12, intron 2 of 4) -15706 ENSMUSG00000113181.1 ENSMUSG00000113181 ENSMUST00000222014 Gm47954 processed_pseudogene Interval_51412 chr14 27335487 27337019 + 0 NA exon (ENSMUSG00000021895.10, exon 1 of 10) protein_coding-exon (ENSMUSG00000021895.10, exon 1 of 10) 44597 ENSMUSG00000093034.1 ENSMUSG00000093034 ENSMUST00000175293 Gm23633 miRNA Interval_71960 chr17 27238560 27239313 + 0 NA intron (ENSMUSG00000117916.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000117916.1, intron 1 of 1) -5918 ENSMUSG00000117794.1 ENSMUSG00000117794 ENSMUST00000236878 Gm50328 lincRNA Interval_63268 chr15 100019276 100019481 + 0 NA Intergenic Intergenic -46091 ENSMUSG00000100084.2 ENSMUSG00000100084 ENSMUST00000188271 2310068J16Rik antisense Interval_88994 chr2 14103582 14104984 + 0 NA intron (ENSMUSG00000026718.17, intron 2 of 11) protein_coding-intron (ENSMUSG00000026718.17, intron 2 of 12) 30061 ENSMUSG00000026718.17 ENSMUSG00000026718 ENSMUST00000131734 Stam protein_coding Interval_130060 chr5 123999367 124001406 + 0 NA promoter-TSS (ENSMUSG00000000915.15) protein_coding-promoter-TSS (ENSMUSG00000000915.15) 600 ENSMUSG00000000915.15 ENSMUSG00000000915 ENSMUST00000166684 Hip1r protein_coding Interval_29798 chr11 86893328 86894830 + 0 NA Intergenic Intergenic 77945 ENSMUSG00000018427.8 ENSMUSG00000018427 ENSMUST00000238921 Ypel2 protein_coding Interval_167198 chr9 66110040 66111083 + 0 NA intron (ENSMUSG00000032382.14, intron 1 of 6) protein_coding-intron (ENSMUSG00000032382.14, intron 1 of 14) -4837 ENSMUSG00000032382.14 ENSMUSG00000032382 ENSMUST00000145449 Snx1 protein_coding Interval_121563 chr5 3467623 3469184 + 0 NA intron (ENSMUSG00000040274.11, intron 4 of 7) protein_coding-intron (ENSMUSG00000040274.11, intron 3 of 6) -2546 ENSMUSG00000040274.11 ENSMUSG00000040274 ENSMUST00000199396 Cdk6 protein_coding Interval_70373 chr17 9202518 9203087 + 0 NA intron (ENSMUSG00000117026.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000117026.1, intron 1 of 2) 13655 ENSMUSG00000117026.1 ENSMUSG00000117026 ENSMUST00000233515 C87487 lincRNA Interval_23818 chr11 26539642 26539821 + 0 NA intron (ENSMUSG00000064090.14, intron 2 of 4) protein_coding-intron (ENSMUSG00000064090.14, intron 5 of 12) -53495 ENSMUSG00000068314.5 ENSMUSG00000068314 ENSMUST00000089614 Gm6899 TEC Interval_152353 chr7 132233808 132234934 + 0 NA intron (ENSMUSG00000030849.18, intron 2 of 6) protein_coding-intron (ENSMUSG00000030849.18, intron 2 of 6) 79707 ENSMUSG00000109555.1 ENSMUSG00000109555 ENSMUST00000208817 Gm44891 TEC Interval_97984 chr2 146414561 146415286 + 0 NA intron (ENSMUSG00000037110.20, intron 8 of 30) protein_coding-intron (ENSMUSG00000037110.20, intron 16 of 40) 97421 ENSMUSG00000037110.20 ENSMUSG00000037110 ENSMUST00000124709 Ralgapa2 protein_coding Interval_124854 chr5 56953010 56953249 + 0 NA Intergenic Intergenic -157695 ENSMUSG00000088751.1 ENSMUSG00000088751 ENSMUST00000158126 Gm24902 snoRNA Interval_164102 chr9 31493896 31494109 + 0 NA intron (ENSMUSG00000111655.1, intron 1 of 1) bidirectional_promoter_lncRNA-intron (ENSMUSG00000111655.1, intron 1 of 1) -29801 ENSMUSG00000041737.8 ENSMUSG00000041737 ENSMUST00000216875 Tmem45b protein_coding Interval_71058 chr17 17550602 17550801 + 0 NA intron (ENSMUSG00000023845.7, intron 10 of 17) protein_coding-intron (ENSMUSG00000023845.7, intron 11 of 17) 44075 ENSMUSG00000116796.1 ENSMUSG00000116796 ENSMUST00000232626 Gm49784 TEC Interval_148245 chr7 80068082 80068297 + 0 NA intron (ENSMUSG00000108714.1, intron 2 of 2) protein_coding-intron (ENSMUSG00000048897.15, intron 1 of 4) 7058 ENSMUSG00000108714.1 ENSMUSG00000108714 ENSMUST00000206022 Gm21057 antisense Interval_161846 chr8 123148365 123149692 + 0 NA intron (ENSMUSG00000000739.14, intron 4 of 5) protein_coding-intron (ENSMUSG00000000739.14, intron 3 of 6) 9287 ENSMUSG00000000739.14 ENSMUSG00000000739 ENSMUST00000152722 Sult5a1 protein_coding Interval_127749 chr5 107319925 107321185 + 0 NA Intergenic Intergenic 17609 ENSMUSG00000088429.1 ENSMUSG00000088429 ENSMUST00000157804 Gm22557 snRNA Interval_152922 chr7 139758478 139758729 + 0 NA Intergenic Intergenic -16111 ENSMUSG00000109905.1 ENSMUSG00000109905 ENSMUST00000211599 Gm7380 processed_pseudogene Interval_10717 chr1 173440440 173440937 + 0 NA intron (ENSMUSG00000037860.15, intron 2 of 5) protein_coding-intron (ENSMUSG00000037860.15, intron 5 of 11) -14666 ENSMUSG00000037860.15 ENSMUSG00000037860 ENSMUST00000135370 Aim2 protein_coding Interval_159925 chr8 105223655 105226203 + 0 NA promoter-TSS (ENSMUSG00000031889.9) protein_coding-promoter-TSS (ENSMUSG00000031889.9) -277 ENSMUSG00000031889.9 ENSMUSG00000031889 ENSMUST00000133035 D230025D16Rik protein_coding Interval_28207 chr11 74376655 74377448 + 0 NA Intergenic Intergenic 14982 ENSMUSG00000058275.3 ENSMUSG00000058275 ENSMUST00000077794 Olfr412 protein_coding Interval_23103 chr11 19962770 19963801 + 0 NA intron (ENSMUSG00000045671.17, intron 1 of 5) protein_coding-intron (ENSMUSG00000045671.17, intron 1 of 5) 8715 ENSMUSG00000045671.17 ENSMUSG00000045671 ENSMUST00000123036 Spred2 protein_coding Interval_31771 chr11 102749326 102750470 + 0 NA intron (ENSMUSG00000086162.1, intron 7 of 10) unitary_pseudogene-intron (ENSMUSG00000086162.1, intron 7 of 10) 17493 ENSMUSG00000086162.1 ENSMUSG00000086162 ENSMUST00000124025 Gm16342 unitary_pseudogene Interval_71789 chr17 26101192 26102241 + 0 NA Intergenic Intergenic -2495 ENSMUSG00000049124.4 ENSMUSG00000049124 ENSMUST00000053575 Gm8186 processed_pseudogene Interval_18128 chr10 82843652 82844919 + 0 NA intron (ENSMUSG00000020250.10, intron 1 of 14) protein_coding-intron (ENSMUSG00000020250.10, intron 1 of 14) 8362 ENSMUSG00000112889.1 ENSMUSG00000112889 ENSMUST00000220118 Gm47073 TEC Interval_113369 chr4 53866815 53867964 + 0 NA Intergenic Intergenic 6737 ENSMUSG00000065887.1 ENSMUSG00000065887 ENSMUST00000083953 n-R5s185 rRNA Interval_168121 chr9 77322685 77323059 + 0 NA intron (ENSMUSG00000032355.16, intron 1 of 6) protein_coding-intron (ENSMUSG00000032355.16, intron 1 of 7) -19797 ENSMUSG00000102783.1 ENSMUSG00000102783 ENSMUST00000192276 Gm38254 TEC Interval_97653 chr2 142236295 142236617 + 0 NA intron (ENSMUSG00000068205.14, intron 6 of 13) protein_coding-intron (ENSMUSG00000068205.14, intron 11 of 17) 59849 ENSMUSG00000068205.14 ENSMUSG00000068205 ENSMUST00000156619 Macrod2 protein_coding Interval_35288 chr12 19855563 19855969 + 0 NA Intergenic Intergenic 9729 ENSMUSG00000113411.1 ENSMUSG00000113411 ENSMUST00000223086 Gm48643 processed_pseudogene Interval_75204 chr17 64655569 64655896 + 0 NA intron (ENSMUSG00000024085.13, intron 5 of 21) protein_coding-intron (ENSMUSG00000024085.13, intron 5 of 21) -57887 ENSMUSG00000024085.13 ENSMUSG00000024085 ENSMUST00000169668 Man2a1 protein_coding Interval_172246 chrX 11806701 11808422 + 0 NA Intergenic Intergenic -42923 ENSMUSG00000065825.1 ENSMUSG00000065825 ENSMUST00000083891 Gm26314 snRNA Interval_10572 chr1 171946296 171947046 + 0 NA intron (ENSMUSG00000015314.10, intron 1 of 2) protein_coding-intron (ENSMUSG00000015314.10, intron 6 of 6) -27315 ENSMUSG00000104413.1 ENSMUSG00000104413 ENSMUST00000191636 Gm37065 antisense Interval_139798 chr6 108796756 108797296 + 0 NA intron (ENSMUSG00000030105.8, intron 1 of 6) protein_coding-intron (ENSMUSG00000030105.8, intron 1 of 6) 2129 ENSMUSG00000030105.8 ENSMUSG00000030105 ENSMUST00000204483 Arl8b protein_coding Interval_94696 chr2 93448021 93448951 + 0 NA intron (ENSMUSG00000027215.13, intron 1 of 9) protein_coding-intron (ENSMUSG00000027215.13, intron 1 of 9) 13426 ENSMUSG00000027215.13 ENSMUSG00000027215 ENSMUST00000124804 Cd82 protein_coding Interval_103403 chr3 41296336 41296737 + 0 NA Intergenic Intergenic -5946 ENSMUSG00000106000.1 ENSMUSG00000106000 ENSMUST00000197066 Gm16508 lincRNA Interval_31774 chr11 102773815 102775136 + 0 NA TTS (ENSMUSG00000020926.16) protein_coding-TTS (ENSMUSG00000020926.16) 358 ENSMUSG00000020926.16 ENSMUSG00000020926 ENSMUST00000135513 Adam11 protein_coding Interval_115996 chr4 106870587 106871048 + 0 NA Intergenic Intergenic -22897 ENSMUSG00000086940.1 ENSMUSG00000086940 ENSMUST00000151369 Gm12746 lincRNA Interval_60812 chr15 76907255 76908713 + 0 NA Intergenic Intergenic 3681 ENSMUSG00000003970.9 ENSMUSG00000003970 ENSMUST00000229591 Rpl8 protein_coding Interval_125318 chr5 66170623 66171223 + 0 NA intron (ENSMUSG00000107014.1, intron 2 of 2) antisense-intron (ENSMUSG00000097092.2, intron 4 of 5) 4420 ENSMUSG00000107069.1 ENSMUSG00000107069 ENSMUST00000202052 Gm43772 transcribed_processed_pseudogene Interval_172753 chrX 48310870 48311356 + 0 NA Intergenic Intergenic 4070 ENSMUSG00000088918.1 ENSMUSG00000088918 ENSMUST00000158293 Gm22612 snRNA Interval_95371 chr2 107063279 107063484 + 0 NA Intergenic Intergenic -3725 ENSMUSG00000027120.6 ENSMUSG00000027120 ENSMUST00000028533 Fshb protein_coding Interval_95387 chr2 107706296 107706700 + 0 NA Intergenic Intergenic -105959 ENSMUSG00000052005.8 ENSMUSG00000052005 ENSMUST00000090043 Gm9864 pseudogene Interval_50240 chr14 11053475 11053673 + 0 NA intron (ENSMUSG00000060579.13, intron 1 of 7) protein_coding-intron (ENSMUSG00000060579.13, intron 2 of 9) -108616 ENSMUSG00000089785.2 ENSMUSG00000089785 ENSMUST00000162199 Slc25a5-ps transcribed_processed_pseudogene Interval_19117 chr10 94763027 94764176 + 0 NA intron (ENSMUSG00000020024.7, intron 4 of 9) protein_coding-intron (ENSMUSG00000020024.7, intron 10 of 15) 23560 ENSMUSG00000112669.1 ENSMUSG00000112669 ENSMUST00000218201 Gm48689 antisense Interval_36009 chr12 33264731 33266054 + 0 NA intron (ENSMUSG00000020564.17, intron 3 of 12) protein_coding-intron (ENSMUSG00000020564.17, intron 3 of 11) -36538 ENSMUSG00000079143.3 ENSMUSG00000079143 ENSMUST00000155877 Atxn7l1os1 antisense Interval_27029 chr11 62456562 62458952 + 0 NA promoter-TSS (ENSMUSG00000014245.8) protein_coding-promoter-TSS (ENSMUSG00000014245.8) -851 ENSMUSG00000014245.8 ENSMUSG00000014245 ENSMUST00000147918 Pigl protein_coding Interval_123256 chr5 30927896 30928370 + 0 NA intron (ENSMUSG00000029162.15, intron 3 of 7) protein_coding-intron (ENSMUSG00000029162.15, intron 4 of 8) 6275 ENSMUSG00000029162.15 ENSMUSG00000029162 ENSMUST00000200978 Khk protein_coding Interval_17511 chr10 77353114 77354007 + 0 NA intron (ENSMUSG00000020262.15, intron 2 of 2) protein_coding-intron (ENSMUSG00000020262.15, intron 2 of 10) 64657 ENSMUSG00000020262.15 ENSMUSG00000020262 ENSMUST00000155117 Adarb1 protein_coding Interval_134810 chr6 31706665 31707867 + 0 NA promoter-TSS (ENSMUSG00000107010.1) lincRNA-promoter-TSS (ENSMUSG00000107010.1) -276 ENSMUSG00000107010.1 ENSMUSG00000107010 ENSMUST00000202780 Gm43293 lincRNA Interval_147223 chr7 64790978 64792501 + 0 NA intron (ENSMUSG00000030518.17, intron 3 of 6) protein_coding-intron (ENSMUSG00000030518.17, intron 4 of 9) 47156 ENSMUSG00000030519.14 ENSMUSG00000030519 ENSMUST00000206630 Apba2 protein_coding Interval_116185 chr4 108473846 108474669 + 0 NA intron (ENSMUSG00000034610.14, intron 2 of 2) protein_coding-intron (ENSMUSG00000034610.14, intron 2 of 30) -4824 ENSMUSG00000034610.14 ENSMUSG00000034610 ENSMUST00000128042 Tut4 protein_coding Interval_42222 chr13 10115309 10115858 + 0 NA intron (ENSMUSG00000046159.16, intron 3 of 4) protein_coding-intron (ENSMUSG00000046159.16, intron 3 of 4) -44717 ENSMUSG00000113680.1 ENSMUSG00000113680 ENSMUST00000221804 Gm47405 sense_intronic Interval_98108 chr2 148121744 148123140 + 0 NA Intergenic Intergenic -28708 ENSMUSG00000089458.1 ENSMUSG00000089458 ENSMUST00000158833 Gm24221 snoRNA Interval_13925 chr10 24711111 24712492 + 0 NA intron (ENSMUSG00000037370.13, intron 1 of 21) protein_coding-intron (ENSMUSG00000037370.13, intron 1 of 24) 196 ENSMUSG00000037370.13 ENSMUSG00000037370 ENSMUST00000142974 Enpp1 protein_coding Interval_163105 chr9 15302229 15303262 + 0 NA exon (ENSMUSG00000031938.15, exon 1 of 1) protein_coding-exon (ENSMUSG00000031938.15, exon 1 of 1) -1231 ENSMUSG00000031938.15 ENSMUSG00000031938 ENSMUST00000215741 4931406C07Rik protein_coding Interval_102688 chr3 30031342 30031880 + 0 NA intron (ENSMUSG00000085702.8, intron 3 of 3) protein_coding-intron (ENSMUSG00000027684.16, intron 1 of 14) 14083 ENSMUSG00000085702.8 ENSMUSG00000085702 ENSMUST00000173827 Mecomos antisense Interval_136652 chr6 57064851 57065063 + 0 NA Intergenic Intergenic -1830 ENSMUSG00000091541.2 ENSMUSG00000091541 ENSMUST00000171186 Vmn1r9 protein_coding Interval_122923 chr5 27399236 27399552 + 0 NA TTS (ENSMUSG00000061576.15) protein_coding-TTS (ENSMUSG00000061576.15) 101968 ENSMUSG00000048703.9 ENSMUSG00000048703 ENSMUST00000124535 Speer4b protein_coding Interval_145408 chr7 34541359 34542437 + 0 NA Intergenic Intergenic -5308 ENSMUSG00000086631.2 ENSMUSG00000086631 ENSMUST00000206001 Gm12784 lincRNA Interval_34943 chr12 14675904 14676305 + 0 NA Intergenic Intergenic 22442 ENSMUSG00000113663.1 ENSMUSG00000113663 ENSMUST00000223066 Gm48504 TEC Interval_14139 chr10 28013108 28014819 + 0 NA Intergenic Intergenic 52227 ENSMUSG00000112432.1 ENSMUSG00000112432 ENSMUST00000218855 Gm18507 processed_pseudogene Interval_40123 chr12 101784504 101785573 + 0 NA intron (ENSMUSG00000021186.9, intron 4 of 10) protein_coding-intron (ENSMUSG00000021186.9, intron 4 of 10) 33430 ENSMUSG00000021186.9 ENSMUSG00000021186 ENSMUST00000221373 Fbln5 protein_coding Interval_17631 chr10 78365533 78368017 + 0 NA Intergenic Intergenic 3545 ENSMUSG00000084496.1 ENSMUSG00000084496 ENSMUST00000122547 Gm22514 misc_RNA Interval_95168 chr2 104504495 104504707 + 0 NA Intergenic Intergenic -32836 ENSMUSG00000081447.1 ENSMUSG00000081447 ENSMUST00000117214 Gm13870 processed_pseudogene Interval_81387 chr18 60311073 60311666 + 0 NA intron (ENSMUSG00000118361.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000118361.1, intron 1 of 2) 17989 ENSMUSG00000090942.1 ENSMUSG00000090942 ENSMUST00000171297 F830016B08Rik protein_coding Interval_83940 chr19 5727512 5728074 + 0 NA TTS (ENSMUSG00000024939.6) protein_coding-TTS (ENSMUSG00000024939.6) 587 ENSMUSG00000089766.1 ENSMUSG00000089766 ENSMUST00000162407 Gm16538 antisense Interval_50677 chr14 18035912 18036080 + 0 NA exon (ENSMUSG00000021779.17, exon 10 of 10) protein_coding-exon (ENSMUSG00000021779.17, exon 10 of 10) -14095 ENSMUSG00000114504.1 ENSMUSG00000114504 ENSMUST00000224512 Gm48321 antisense Interval_172494 chrX 21409207 21410052 + 0 NA Intergenic Intergenic 48689 ENSMUSG00000051537.9 ENSMUSG00000051537 ENSMUST00000132683 Gm5124 transcribed_processed_pseudogene Interval_145358 chr7 34207643 34209068 + 0 NA promoter-TSS (ENSMUSG00000036427.5) protein_coding-promoter-TSS (ENSMUSG00000036427.5) -15574 ENSMUSG00000002635.11 ENSMUSG00000002635 ENSMUST00000125803 Pdcd2l protein_coding Interval_59596 chr15 55818769 55819078 + 0 NA intron (ENSMUSG00000060429.12, intron 1 of 1) protein_coding-intron (ENSMUSG00000060429.12, intron 1 of 6) 87387 ENSMUSG00000060429.12 ENSMUSG00000060429 ENSMUST00000140574 Sntb1 protein_coding Interval_43990 chr13 38808631 38808888 + 0 NA intron (ENSMUSG00000114319.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000114767.1, intron 3 of 3) 16996 ENSMUSG00000114319.1 ENSMUSG00000114319 ENSMUST00000225304 Gm47509 lincRNA Interval_120742 chr4 150380972 150381229 + 0 NA intron (ENSMUSG00000039852.17, intron 1 of 22) protein_coding-intron (ENSMUSG00000039852.17, intron 1 of 22) 59907 ENSMUSG00000089292.1 ENSMUSG00000089292 ENSMUST00000158667 Gm23209 snRNA Interval_174276 chrX 143046406 143047038 + 0 NA Intergenic Intergenic -52872 ENSMUSG00000085584.3 ENSMUSG00000085584 ENSMUST00000165829 Rtl9 protein_coding Interval_49827 chr13 116739884 116740299 + 0 NA Intergenic Intergenic -62386 ENSMUSG00000114731.1 ENSMUSG00000114731 ENSMUST00000224048 Gm47914 lincRNA Interval_63508 chr15 101536281 101536530 + 0 NA Intergenic Intergenic -6064 ENSMUSG00000044294.8 ENSMUSG00000044294 ENSMUST00000229893 Krt84 protein_coding Interval_47434 chr13 84221689 84222886 + 0 NA promoter-TSS (ENSMUSG00000035762.11) protein_coding-promoter-TSS (ENSMUSG00000035762.11) -187 ENSMUSG00000097292.2 ENSMUSG00000097292 ENSMUST00000185973 A230107N01Rik antisense Interval_29401 chr11 83753294 83754509 + 0 NA promoter-TSS (ENSMUSG00000000976.13) protein_coding-promoter-TSS (ENSMUSG00000000976.13) 6961 ENSMUSG00000051748.2 ENSMUSG00000051748 ENSMUST00000070832 Wfdc21 protein_coding Interval_133649 chr6 8038721 8038937 + 0 NA intron (ENSMUSG00000068794.7, intron 27 of 34) protein_coding-intron (ENSMUSG00000068794.7, intron 27 of 34) -55446 ENSMUSG00000096403.2 ENSMUSG00000096403 ENSMUST00000178598 Rnps1-ps processed_pseudogene Interval_74688 chr17 55964918 55965108 + 0 NA intron (ENSMUSG00000003208.9, intron 5 of 6) protein_coding-intron (ENSMUSG00000003208.9, intron 5 of 7) -5632 ENSMUSG00000097077.1 ENSMUSG00000097077 ENSMUST00000181962 Gm16712 antisense Interval_143194 chr7 4394558 4395165 + 0 NA intron (ENSMUSG00000078810.4, intron 1 of 7) protein_coding-intron (ENSMUSG00000078810.4, intron 1 of 6) -1741 ENSMUSG00000095246.1 ENSMUSG00000095246 ENSMUST00000178240 Gm24752 miRNA Interval_75438 chr17 66536426 66536689 + 0 NA intron (ENSMUSG00000117235.1, intron 2 of 2) lincRNA-intron (ENSMUSG00000117235.1, intron 2 of 2) 4454 ENSMUSG00000117235.1 ENSMUSG00000117235 ENSMUST00000233785 Gm49938 lincRNA Interval_20243 chr10 116394108 116394877 + 0 NA Intergenic Intergenic -23560 ENSMUSG00000020164.7 ENSMUSG00000020164 ENSMUST00000134586 Kcnmb4os1 antisense Interval_50803 chr14 19930041 19930529 + 0 NA intron (ENSMUSG00000043004.13, intron 3 of 5) protein_coding-intron (ENSMUSG00000043004.13, intron 3 of 5) 46899 ENSMUSG00000043004.13 ENSMUSG00000043004 ENSMUST00000161247 Gng2 protein_coding Interval_93571 chr2 74563231 74564780 + 0 NA intron (ENSMUSG00000009207.15, intron 3 of 5) protein_coding-intron (ENSMUSG00000009207.15, intron 4 of 12) -9009 ENSMUSG00000009207.15 ENSMUSG00000009207 ENSMUST00000134168 Lnpk protein_coding Interval_21078 chr10 125977658 125978037 + 0 NA intron (ENSMUSG00000020105.9, intron 3 of 12) protein_coding-intron (ENSMUSG00000020105.9, intron 3 of 18) 11613 ENSMUSG00000020105.9 ENSMUSG00000020105 ENSMUST00000219974 Lrig3 protein_coding Interval_84071 chr19 7050971 7051229 + 0 NA Intergenic Intergenic -5710 ENSMUSG00000036278.7 ENSMUSG00000036278 ENSMUST00000040261 Macrod1 protein_coding Interval_99356 chr2 160093070 160094065 + 0 NA Intergenic Intergenic 76914 ENSMUSG00000086653.1 ENSMUSG00000086653 ENSMUST00000140319 9130015L21Rik lincRNA Interval_8471 chr1 139683202 139683686 + 0 NA Intergenic Intergenic 11840 ENSMUSG00000096117.1 ENSMUSG00000096117 ENSMUST00000158349 Gm26271 snRNA Interval_171249 chr9 115626531 115626755 + 0 NA promoter-TSS (ENSMUSG00000094630.1) rRNA-promoter-TSS (ENSMUSG00000094630.1) 75 ENSMUSG00000094630.1 ENSMUSG00000094630 ENSMUST00000082810 n-R5s92 rRNA Interval_141943 chr6 135700019 135700705 + 0 NA Intergenic Intergenic -32508 ENSMUSG00000086239.1 ENSMUSG00000086239 ENSMUST00000136027 Gm14329 lincRNA Interval_109104 chr3 135795219 135796041 + 0 NA Intergenic Intergenic -30027 ENSMUSG00000053897.15 ENSMUSG00000053897 ENSMUST00000133810 Slc39a8 protein_coding Interval_69732 chr16 95923702 95925051 + 0 NA intron (ENSMUSG00000117232.1, intron 1 of 3) lincRNA-intron (ENSMUSG00000117232.1, intron 1 of 3) 23978 ENSMUSG00000085903.1 ENSMUSG00000085903 ENSMUST00000144984 Gm15340 lincRNA Interval_14986 chr10 41724653 41724980 + 0 NA intron (ENSMUSG00000019813.16, intron 7 of 10) protein_coding-intron (ENSMUSG00000019813.16, intron 7 of 10) -21905 ENSMUSG00000102114.2 ENSMUSG00000102114 ENSMUST00000190793 BC048559 antisense Interval_99320 chr2 158922358 158923590 + 0 NA Intergenic Intergenic 95556 ENSMUSG00000027655.14 ENSMUSG00000027655 ENSMUST00000143195 Dhx35 protein_coding Interval_8837 chr1 151460643 151461511 + 0 NA intron (ENSMUSG00000026484.13, intron 3 of 3) protein_coding-intron (ENSMUSG00000026484.13, intron 3 of 3) 15085 ENSMUSG00000026484.13 ENSMUSG00000026484 ENSMUST00000187991 Rnf2 protein_coding Interval_141560 chr6 129254738 129256340 + 0 NA Intergenic Intergenic 17263 ENSMUSG00000112144.1 ENSMUSG00000112144 ENSMUST00000218416 Gm47861 lincRNA Interval_22872 chr11 16959375 16959825 + 0 NA Intergenic Intergenic 8225 ENSMUSG00000044966.4 ENSMUSG00000044966 ENSMUST00000061327 Fbxo48 protein_coding Interval_98890 chr2 155826085 155827440 + 0 NA promoter-TSS (ENSMUSG00000027613.15) protein_coding-promoter-TSS (ENSMUSG00000027613.15) -26 ENSMUSG00000086754.1 ENSMUSG00000086754 ENSMUST00000141926 Gm16098 antisense Interval_135316 chr6 38253662 38254740 + 0 NA promoter-TSS (ENSMUSG00000063455.16) protein_coding-promoter-TSS (ENSMUSG00000063455.16) -192 ENSMUSG00000063455.16 ENSMUSG00000063455 ENSMUST00000152464 D630045J12Rik protein_coding Interval_149352 chr7 97645565 97646493 + 0 NA promoter-TSS (ENSMUSG00000086433.1) antisense-promoter-TSS (ENSMUSG00000086433.1) -917 ENSMUSG00000086433.1 ENSMUSG00000086433 ENSMUST00000126902 Rsf1os1 antisense Interval_107427 chr3 107579182 107579461 + 0 NA Intergenic Intergenic -21115 ENSMUSG00000014603.3 ENSMUSG00000014603 ENSMUST00000233202 Alx3 protein_coding Interval_11810 chr1 185595438 185595931 + 0 NA Intergenic Intergenic 108390 ENSMUSG00000102185.1 ENSMUSG00000102185 ENSMUST00000192616 5033404E19Rik transcribed_processed_pseudogene Interval_141663 chr6 132840781 132841625 + 0 NA Intergenic Intergenic -5939 ENSMUSG00000057381.1 ENSMUSG00000057381 ENSMUST00000071696 Tas2r123 protein_coding Interval_109651 chr3 145740066 145740376 + 0 NA Intergenic Intergenic -1055 ENSMUSG00000105608.1 ENSMUSG00000105608 ENSMUST00000198263 Gm43408 processed_pseudogene Interval_43691 chr13 35065926 35066803 + 0 NA intron (ENSMUSG00000114233.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000113738.1, intron 1 of 4) 903 ENSMUSG00000114233.1 ENSMUSG00000114233 ENSMUST00000225041 Gm48629 lincRNA Interval_167733 chr9 72364804 72366172 + 0 NA intron (ENSMUSG00000097211.2, intron 1 of 1) antisense-intron (ENSMUSG00000097211.2, intron 1 of 1) 8261 ENSMUSG00000103388.1 ENSMUSG00000103388 ENSMUST00000192371 Gm37581 TEC Interval_172746 chrX 48234135 48235217 + 0 NA Intergenic Intergenic 4390 ENSMUSG00000064806.2 ENSMUSG00000064806 ENSMUST00000082872 Gm24038 snRNA Interval_124266 chr5 43175489 43175702 + 0 NA intron (ENSMUSG00000085720.8, intron 3 of 5) antisense-intron (ENSMUSG00000085720.8, intron 5 of 7) -27268 ENSMUSG00000105087.1 ENSMUSG00000105087 ENSMUST00000196754 Gm42552 TEC Interval_173397 chrX 88158143 88158406 + 0 NA Intergenic Intergenic -34343 ENSMUSG00000065747.1 ENSMUSG00000065747 ENSMUST00000083813 Gm25006 snRNA Interval_129856 chr5 122768923 122769762 + 0 NA intron (ENSMUSG00000029471.13, intron 1 of 15) protein_coding-intron (ENSMUSG00000029471.13, intron 1 of 16) 9991 ENSMUSG00000029471.13 ENSMUSG00000029471 ENSMUST00000199599 Camkk2 protein_coding Interval_6863 chr1 120196897 120197824 + 0 NA intron (ENSMUSG00000026389.16, intron 4 of 4) protein_coding-intron (ENSMUSG00000026389.16, intron 4 of 4) 46761 ENSMUSG00000026388.15 ENSMUSG00000026388 ENSMUST00000128578 3110009E18Rik protein_coding Interval_20803 chr10 121083454 121084058 + 0 NA promoter-TSS (ENSMUSG00000020218.11) protein_coding-promoter-TSS (ENSMUSG00000020218.11) 31489 ENSMUSG00000112780.1 ENSMUSG00000112780 ENSMUST00000217935 Gm48410 lincRNA Interval_112149 chr4 34953575 34953938 + 0 NA exon (ENSMUSG00000073910.10, exon 4 of 4) protein_coding-exon (ENSMUSG00000073910.10, exon 4 of 4) -8464 ENSMUSG00000086792.1 ENSMUSG00000086792 ENSMUST00000144419 Gm12364 antisense Interval_152140 chr7 130032067 130032271 + 0 NA Intergenic Intergenic -2925 ENSMUSG00000065763.1 ENSMUSG00000065763 ENSMUST00000083829 Gm23847 snRNA Interval_95153 chr2 104377891 104378496 + 0 NA intron (ENSMUSG00000068373.15, intron 1 of 20) protein_coding-intron (ENSMUSG00000068373.15, intron 1 of 20) 32820 ENSMUSG00000068373.15 ENSMUSG00000068373 ENSMUST00000149165 D430041D05Rik protein_coding Interval_149070 chr7 92855709 92857546 + 0 NA TTS (ENSMUSG00000030641.10) protein_coding-TTS (ENSMUSG00000030641.10) 17605 ENSMUSG00000030641.10 ENSMUSG00000030641 ENSMUST00000207931 Ddias protein_coding Interval_17557 chr10 77735980 77736557 + 0 NA intron (ENSMUSG00000069581.12, intron 1 of 11) protein_coding-intron (ENSMUSG00000069581.12, intron 1 of 11) -1113 ENSMUSG00000112236.1 ENSMUSG00000112236 ENSMUST00000219191 Gm48180 unprocessed_pseudogene Interval_27266 chr11 65109943 65110481 + 0 NA intron (ENSMUSG00000033389.16, intron 1 of 20) protein_coding-intron (ENSMUSG00000033389.16, intron 1 of 20) -42405 ENSMUSG00000076394.1 ENSMUSG00000076394 ENSMUST00000102439 Gm25991 miRNA Interval_160736 chr8 111889870 111891072 + 0 NA exon (ENSMUSG00000031952.5, exon 2 of 2) protein_coding-exon (ENSMUSG00000031952.5, exon 2 of 2) 11167 ENSMUSG00000089000.1 ENSMUSG00000089000 ENSMUST00000158375 Gm23853 snRNA Interval_113242 chr4 51739109 51739358 + 0 NA Intergenic Intergenic -60687 ENSMUSG00000088954.1 ENSMUSG00000088954 ENSMUST00000158329 Gm24943 ribozyme Interval_62762 chr15 96690987 96691715 + 0 NA exon (ENSMUSG00000022462.7, exon 14 of 16) protein_coding-exon (ENSMUSG00000022462.7, exon 14 of 16) 7340 ENSMUSG00000022462.7 ENSMUSG00000022462 ENSMUST00000229141 Slc38a2 protein_coding Interval_61777 chr15 84064925 84065882 + 0 NA promoter-TSS (ENSMUSG00000022441.17) protein_coding-promoter-TSS (ENSMUSG00000022441.17) 35064 ENSMUSG00000081925.1 ENSMUSG00000081925 ENSMUST00000117961 Rpl31-ps22 processed_pseudogene Interval_57794 chr15 20185271 20185500 + 0 NA TTS (ENSMUSG00000089320.1) snoRNA-TTS (ENSMUSG00000089320.1) 553 ENSMUSG00000089320.1 ENSMUSG00000089320 ENSMUST00000158695 Gm25976 snoRNA Interval_55474 chr14 87775377 87775856 + 0 NA Intergenic Intergenic -138146 ENSMUSG00000115608.1 ENSMUSG00000115608 ENSMUST00000228615 Gm48922 processed_pseudogene Interval_50309 chr14 11771282 11771775 + 0 NA TTS (ENSMUSG00000114310.1) TEC-TTS (ENSMUSG00000114310.1) 3585 ENSMUSG00000114310.1 ENSMUSG00000114310 ENSMUST00000225152 Gm48602 TEC Interval_4879 chr1 81287151 81287722 + 0 NA intron (ENSMUSG00000054976.14, intron 6 of 6) protein_coding-intron (ENSMUSG00000054976.14, intron 5 of 5) 210486 ENSMUSG00000054976.14 ENSMUSG00000054976 ENSMUST00000123285 Nyap2 protein_coding Interval_83770 chr19 4567470 4568317 + 0 NA intron (ENSMUSG00000024892.17, intron 1 of 2) protein_coding-intron (ENSMUSG00000024892.17, intron 2 of 20) -26515 ENSMUSG00000024892.17 ENSMUSG00000024892 ENSMUST00000238089 Pcx protein_coding Interval_125095 chr5 64401695 64402709 + 0 NA Intergenic Intergenic 18748 ENSMUSG00000105443.1 ENSMUSG00000105443 ENSMUST00000200306 Gm43837 lincRNA Interval_34805 chr12 11351440 11351691 + 0 NA intron (ENSMUSG00000054459.8, intron 2 of 3) protein_coding-intron (ENSMUSG00000054459.8, intron 2 of 3) 51678 ENSMUSG00000098879.1 ENSMUSG00000098879 ENSMUST00000184262 Mir7675 miRNA Interval_136755 chr6 59108153 59108844 + 0 NA Intergenic Intergenic 9245 ENSMUSG00000096371.1 ENSMUSG00000096371 ENSMUST00000178930 Gm22367 snoRNA Interval_45366 chr13 54675906 54676196 + 0 NA Intergenic Intergenic 11757 ENSMUSG00000034928.16 ENSMUSG00000034928 ENSMUST00000150626 Rnf44 protein_coding Interval_34254 chr11 121652592 121653347 + 0 NA intron (ENSMUSG00000046605.14, intron 3 of 12) protein_coding-intron (ENSMUSG00000046605.14, intron 3 of 8) 20184 ENSMUSG00000046605.14 ENSMUSG00000046605 ENSMUST00000062654 B3gntl1 protein_coding Interval_45269 chr13 53765991 53766274 + 0 NA Intergenic Intergenic -10495 ENSMUSG00000114143.1 ENSMUSG00000114143 ENSMUST00000221931 Gm48548 lincRNA Interval_173752 chrX 103458249 103458664 + 0 NA intron (ENSMUSG00000085715.2, intron 1 of 1) antisense-intron (ENSMUSG00000085715.2, intron 3 of 3) 2829 ENSMUSG00000099312.1 ENSMUSG00000099312 ENSMUST00000184803 Gm27733 misc_RNA Interval_101689 chr3 8959590 8959833 + 0 NA intron (ENSMUSG00000027506.15, intron 1 of 3) protein_coding-intron (ENSMUSG00000027506.15, intron 1 of 6) -35793 ENSMUSG00000040269.5 ENSMUSG00000040269 ENSMUST00000042148 Mrps28 protein_coding Interval_152915 chr7 139702635 139704002 + 0 NA Intergenic Intergenic -16081 ENSMUSG00000056777.5 ENSMUSG00000056777 ENSMUST00000072532 Rpl21-ps13 processed_pseudogene Interval_136397 chr6 54096209 54098760 + 0 NA promoter-TSS (ENSMUSG00000004633.17) protein_coding-promoter-TSS (ENSMUSG00000004633.17) 53453 ENSMUSG00000087670.1 ENSMUSG00000087670 ENSMUST00000138767 9530036M11Rik antisense Interval_43870 chr13 37749492 37749925 + 0 NA Intergenic Intergenic -12040 ENSMUSG00000114800.1 ENSMUSG00000114800 ENSMUST00000224394 Gm31600 lincRNA Interval_123007 chr5 28370498 28371483 + 0 NA intron (ENSMUSG00000048271.14, intron 9 of 17) protein_coding-intron (ENSMUSG00000048271.14, intron 10 of 18) -23065 ENSMUSG00000048271.14 ENSMUSG00000048271 ENSMUST00000133313 Rbm33 protein_coding Interval_74275 chr17 47832719 47834825 + 0 NA promoter-TSS (ENSMUSG00000032717.14) protein_coding-promoter-TSS (ENSMUSG00000032717.14) -500 ENSMUSG00000032717.14 ENSMUSG00000032717 ENSMUST00000129360 Mdfi protein_coding Interval_149052 chr7 92713355 92713656 + 0 NA Intergenic Intergenic 6732 ENSMUSG00000109395.1 ENSMUSG00000109395 ENSMUST00000207640 Gm45199 TEC Interval_153274 chr7 143123888 143125044 + 0 NA promoter-TSS (ENSMUSG00000102980.1) TEC-promoter-TSS (ENSMUSG00000102980.1) -103 ENSMUSG00000102980.1 ENSMUSG00000102980 ENSMUST00000195053 Gm38321 TEC Interval_117632 chr4 125152545 125152783 + 0 NA Intergenic Intergenic -30144 ENSMUSG00000042677.7 ENSMUSG00000042677 ENSMUST00000131685 Zc3h12a protein_coding Interval_121991 chr5 13116040 13116249 + 0 NA Intergenic Intergenic 5622 ENSMUSG00000062038.5 ENSMUSG00000062038 ENSMUST00000078246 Gm10108 processed_pseudogene Interval_52939 chr14 52146382 52147160 + 0 NA promoter-TSS (ENSMUSG00000057132.16) protein_coding-promoter-TSS (ENSMUSG00000057132.16) -2836 ENSMUSG00000057132.16 ENSMUSG00000057132 ENSMUST00000181736 Rpgrip1 protein_coding Interval_87640 chr19 53916984 53917218 + 0 NA intron (ENSMUSG00000024975.13, intron 5 of 9) protein_coding-intron (ENSMUSG00000024975.13, intron 5 of 11) 23271 ENSMUSG00000024975.13 ENSMUSG00000024975 ENSMUST00000165617 Pdcd4 protein_coding Interval_71605 chr17 24810986 24811889 + 0 NA intron (ENSMUSG00000024155.8, intron 1 of 13) protein_coding-intron (ENSMUSG00000024155.8, intron 1 of 13) 7078 ENSMUSG00000024155.8 ENSMUSG00000024155 ENSMUST00000234455 Meiob protein_coding Interval_102594 chr3 28096184 28096502 + 0 NA intron (ENSMUSG00000027695.16, intron 14 of 21) protein_coding-intron (ENSMUSG00000027695.16, intron 19 of 25) 17153 ENSMUSG00000027695.16 ENSMUSG00000027695 ENSMUST00000126594 Pld1 protein_coding Interval_134602 chr6 29876544 29877365 + 0 NA exon (ENSMUSG00000029772.17, exon 1 of 1) protein_coding-exon (ENSMUSG00000029772.17, exon 1 of 1) 275 ENSMUSG00000029772.17 ENSMUSG00000029772 ENSMUST00000128837 Ahcyl2 protein_coding Interval_126452 chr5 88656626 88659091 + 0 NA Intergenic Intergenic 11167 ENSMUSG00000029291.11 ENSMUSG00000029291 ENSMUST00000199956 Rufy3 protein_coding Interval_168086 chr9 76104136 76105560 + 0 NA intron (ENSMUSG00000007908.14, intron 4 of 5) protein_coding-intron (ENSMUSG00000007908.14, intron 7 of 8) 37399 ENSMUSG00000103354.1 ENSMUSG00000103354 ENSMUST00000194758 Gm38083 TEC Interval_173992 chrX 126543560 126543855 + 0 NA Intergenic Intergenic 68809 ENSMUSG00000082611.1 ENSMUSG00000082611 ENSMUST00000120966 Gm7746 processed_pseudogene Interval_133669 chr6 8294127 8295005 + 0 NA intron (ENSMUSG00000089862.8, intron 2 of 2) protein_coding-intron (ENSMUSG00000089862.8, intron 1 of 2) 35116 ENSMUSG00000107705.1 ENSMUSG00000107705 ENSMUST00000162564 Gm45062 protein_coding Interval_23704 chr11 24835688 24835930 + 0 NA Intergenic Intergenic 90241 ENSMUSG00000087145.7 ENSMUSG00000087145 ENSMUST00000126063 Gm12665 lincRNA Interval_115380 chr4 98382722 98383408 + 0 NA promoter-TSS (ENSMUSG00000028563.16) protein_coding-promoter-TSS (ENSMUSG00000028563.16) 167 ENSMUSG00000028563.16 ENSMUSG00000028563 ENSMUST00000143116 Tm2d1 protein_coding Interval_150702 chr7 113584137 113584727 + 0 NA Intergenic Intergenic -8430 ENSMUSG00000109968.1 ENSMUSG00000109968 ENSMUST00000211320 Gm45612 processed_pseudogene Interval_104075 chr3 58249240 58249427 + 0 NA Intergenic Intergenic 41024 ENSMUSG00000065722.1 ENSMUSG00000065722 ENSMUST00000083788 Gm26166 snRNA Interval_138852 chr6 92565684 92565913 + 0 NA intron (ENSMUSG00000030020.13, intron 2 of 8) protein_coding-intron (ENSMUSG00000030020.13, intron 2 of 8) 1568 ENSMUSG00000030020.13 ENSMUSG00000030020 ENSMUST00000113445 Prickle2 protein_coding Interval_142338 chr6 140701525 140702990 + 0 NA Intergenic Intergenic -27027 ENSMUSG00000079264.1 ENSMUSG00000079264 ENSMUST00000111844 Gm11077 protein_coding Interval_15349 chr10 44995066 44995450 + 0 NA Intergenic Intergenic -10852 ENSMUSG00000095168.1 ENSMUSG00000095168 ENSMUST00000095717 Gm4795 processed_pseudogene Interval_1728 chr1 32965148 32965385 + 0 NA Intergenic Intergenic 7224 ENSMUSG00000102926.1 ENSMUSG00000102926 ENSMUST00000194631 Gm37151 TEC Interval_147107 chr7 63193839 63194049 + 0 NA intron (ENSMUSG00000030525.8, intron 2 of 4) protein_coding-intron (ENSMUSG00000030525.8, intron 2 of 9) 18625 ENSMUSG00000030525.8 ENSMUSG00000030525 ENSMUST00000208304 Chrna7 protein_coding Interval_72429 chr17 29760254 29760943 + 0 NA Intergenic Intergenic 43526 ENSMUSG00000117434.1 ENSMUSG00000117434 ENSMUST00000234637 1810014P07Rik bidirectional_promoter_lncRNA Interval_36468 chr12 45309402 45309700 + 0 NA Intergenic Intergenic -50148 ENSMUSG00000089226.1 ENSMUSG00000089226 ENSMUST00000158601 Gm22076 rRNA Interval_46952 chr13 73710811 73711223 + 0 NA Intergenic Intergenic 7301 ENSMUSG00000021566.7 ENSMUSG00000021566 ENSMUST00000160958 Slc6a19os antisense Interval_74711 chr17 56109681 56110206 + 0 NA promoter-TSS (ENSMUSG00000002831.14) protein_coding-promoter-TSS (ENSMUSG00000002831.14) -140 ENSMUSG00000002831.14 ENSMUSG00000002831 ENSMUST00000190703 Plin4 protein_coding Interval_24873 chr11 40679006 40679376 + 0 NA TTS (ENSMUSG00000042032.13) protein_coding-TTS (ENSMUSG00000042032.13) -5335 ENSMUSG00000082087.4 ENSMUSG00000082087 ENSMUST00000122180 Gm12138 processed_pseudogene Interval_17759 chr10 79932671 79932992 + 0 NA intron (ENSMUSG00000019564.12, intron 3 of 8) protein_coding-intron (ENSMUSG00000019564.12, intron 3 of 8) -11623 ENSMUSG00000035781.14 ENSMUSG00000035781 ENSMUST00000219867 R3hdm4 protein_coding Interval_128191 chr5 111620141 111620928 + 0 NA Intergenic Intergenic 26918 ENSMUSG00000104833.1 ENSMUSG00000104833 ENSMUST00000198964 Gm42489 lincRNA Interval_79531 chr18 33020660 33020892 + 0 NA intron (ENSMUSG00000038128.7, intron 4 of 14) protein_coding-intron (ENSMUSG00000038128.7, intron 1 of 10) -16010 ENSMUSG00000088077.1 ENSMUSG00000088077 ENSMUST00000157452 Gm22814 snRNA Interval_123990 chr5 37049324 37049789 + 0 NA intron (ENSMUSG00000063646.18, intron 1 of 1) protein_coding-intron (ENSMUSG00000063646.18, intron 1 of 5) -7910 ENSMUSG00000097686.1 ENSMUSG00000097686 ENSMUST00000180816 Gm26647 antisense Interval_152574 chr7 134711236 134712150 + 0 NA intron (ENSMUSG00000058325.6, intron 1 of 18) protein_coding-intron (ENSMUSG00000058325.6, intron 1 of 51) 41006 ENSMUSG00000058325.6 ENSMUSG00000058325 ENSMUST00000210121 Dock1 protein_coding Interval_46335 chr13 64035417 64037048 + 0 NA Intergenic Intergenic 52969 ENSMUSG00000033122.14 ENSMUSG00000033122 ENSMUST00000222810 Hsd17b3 protein_coding Interval_85852 chr19 32377821 32378201 + 0 NA intron (ENSMUSG00000040451.18, intron 1 of 5) protein_coding-intron (ENSMUSG00000040451.18, intron 1 of 9) -11205 ENSMUSG00000097787.2 ENSMUSG00000097787 ENSMUST00000181612 2700046G09Rik bidirectional_promoter_lncRNA Interval_59846 chr15 59744178 59744867 + 0 NA Intergenic Intergenic 50437 ENSMUSG00000115426.1 ENSMUSG00000115426 ENSMUST00000228865 Gm19510 lincRNA Interval_110664 chr4 5807585 5807854 + 0 NA intron (ENSMUSG00000049119.14, intron 3 of 4) protein_coding-intron (ENSMUSG00000049119.14, intron 3 of 4) 34840 ENSMUSG00000049119.14 ENSMUSG00000049119 ENSMUST00000145365 Fam110b protein_coding Interval_121523 chr5 3161791 3162699 + 0 NA Intergenic Intergenic 38468 ENSMUSG00000091483.1 ENSMUSG00000091483 ENSMUST00000162728 Gm8715 unprocessed_pseudogene Interval_32472 chr11 107724857 107725322 + 0 NA Intergenic Intergenic -8567 ENSMUSG00000020722.5 ENSMUSG00000020722 ENSMUST00000021065 Cacng1 protein_coding Interval_95166 chr2 104481995 104482781 + 0 NA intron (ENSMUSG00000027177.14, intron 1 of 16) protein_coding-intron (ENSMUSG00000027177.14, intron 1 of 15) -43136 ENSMUSG00000027177.14 ENSMUSG00000027177 ENSMUST00000132622 Hipk3 protein_coding Interval_170945 chr9 113006491 113006702 + 0 NA Intergenic Intergenic 116433 ENSMUSG00000110996.1 ENSMUSG00000110996 ENSMUST00000214620 Gm36251 lincRNA Interval_70348 chr17 8800120 8802984 + 0 NA promoter-TSS (ENSMUSG00000023868.17) protein_coding-promoter-TSS (ENSMUSG00000023868.17) -35625 ENSMUSG00000083386.1 ENSMUSG00000083386 ENSMUST00000117823 Gm15426 processed_pseudogene Interval_143496 chr7 10543409 10543730 + 0 NA intron (ENSMUSG00000047031.5, intron 2 of 7) protein_coding-intron (ENSMUSG00000047031.5, intron 2 of 5) 6866 ENSMUSG00000093595.1 ENSMUSG00000093595 ENSMUST00000177009 Vmn1r-ps49 unprocessed_pseudogene Interval_136417 chr6 54277137 54278030 + 0 NA intron (ENSMUSG00000004633.17, intron 1 of 5) protein_coding-intron (ENSMUSG00000004633.17, intron 7 of 12) 4675 ENSMUSG00000004633.17 ENSMUSG00000004633 ENSMUST00000204746 Chn2 protein_coding Interval_120585 chr4 149538960 149539161 + 0 NA intron (ENSMUSG00000028988.13, intron 1 of 4) protein_coding-intron (ENSMUSG00000028988.13, intron 1 of 4) 1197 ENSMUSG00000093403.1 ENSMUSG00000093403 ENSMUST00000177217 Mir5616 miRNA Interval_125021 chr5 63930498 63931250 + 0 NA promoter-TSS (ENSMUSG00000047881.14) protein_coding-promoter-TSS (ENSMUSG00000047881.14) 40 ENSMUSG00000047881.14 ENSMUSG00000047881 ENSMUST00000127314 Rell1 protein_coding Interval_96218 chr2 120577564 120579404 + 0 NA intron (ENSMUSG00000027287.14, intron 2 of 5) protein_coding-intron (ENSMUSG00000027287.14, intron 1 of 7) 10761 ENSMUSG00000027287.14 ENSMUSG00000027287 ENSMUST00000130759 Snap23 protein_coding Interval_55214 chr14 79382359 79382780 + 0 NA intron (ENSMUSG00000022020.15, intron 2 of 6) protein_coding-intron (ENSMUSG00000022020.15, intron 4 of 19) -15417 ENSMUSG00000022022.3 ENSMUSG00000022022 ENSMUST00000227610 Mtrf1 protein_coding Interval_163845 chr9 27109631 27111443 + 0 NA intron (ENSMUSG00000031990.15, intron 1 of 2) protein_coding-intron (ENSMUSG00000031990.15, intron 1 of 8) 11986 ENSMUSG00000111390.1 ENSMUSG00000111390 ENSMUST00000217654 Gm48796 antisense Interval_81070 chr18 53552091 53552702 + 0 NA intron (ENSMUSG00000069378.14, intron 5 of 5) protein_coding-intron (ENSMUSG00000069378.14, intron 5 of 6) -86710 ENSMUSG00000118362.1 ENSMUSG00000118362 ENSMUST00000235670 Gm19466 lincRNA Interval_32209 chr11 106170941 106171308 + 0 NA intron (ENSMUSG00000069631.14, intron 6 of 7) protein_coding-intron (ENSMUSG00000069631.14, intron 7 of 12) 10931 ENSMUSG00000075480.2 ENSMUSG00000075480 ENSMUST00000100326 Gm10840 TEC Interval_36995 chr12 56070011 56070645 + 0 NA Intergenic Intergenic -13573 ENSMUSG00000093300.1 ENSMUSG00000093300 ENSMUST00000175559 Gm23799 rRNA Interval_36372 chr12 42526019 42526490 + 0 NA Intergenic Intergenic 244538 ENSMUSG00000093214.1 ENSMUSG00000093214 ENSMUST00000175473 Gm25248 miRNA Interval_68677 chr16 84558312 84558838 + 0 NA Intergenic Intergenic 42631 ENSMUSG00000116599.1 ENSMUSG00000116599 ENSMUST00000231673 Gm2477 processed_pseudogene Interval_62981 chr15 98475009 98475844 + 0 NA exon (ENSMUSG00000108728.4, exon 3 of 3) protein_coding-exon (ENSMUSG00000108728.4, exon 3 of 3) 5530 ENSMUSG00000108728.4 ENSMUSG00000108728 ENSMUST00000216180 OR5BS1P protein_coding Interval_160293 chr8 107820290 107820502 + 0 NA Intergenic Intergenic -20561 ENSMUSG00000095727.1 ENSMUSG00000095727 ENSMUST00000178119 Gm23646 miRNA Interval_135397 chr6 39013031 39013877 + 0 NA promoter-TSS (ENSMUSG00000077339.1) snoRNA-promoter-TSS (ENSMUSG00000077339.1) -212 ENSMUSG00000077339.1 ENSMUSG00000077339 ENSMUST00000104151 Gm23010 snoRNA Interval_36834 chr12 54530471 54530750 + 0 NA Intergenic Intergenic -13531 ENSMUSG00000113947.1 ENSMUSG00000113947 ENSMUST00000223133 Gm10465 lincRNA Interval_165538 chr9 49128266 49129141 + 0 NA Intergenic Intergenic 25975 ENSMUSG00000032268.13 ENSMUSG00000032268 ENSMUST00000170426 Tmprss5 protein_coding Interval_39523 chr12 89282306 89283635 + 0 NA intron (ENSMUSG00000066392.12, intron 5 of 18) protein_coding-intron (ENSMUSG00000066392.12, intron 6 of 19) 15613 ENSMUSG00000098757.1 ENSMUSG00000098757 ENSMUST00000183500 Gm27313 miRNA Interval_42827 chr13 20096749 20098092 + 0 NA intron (ENSMUSG00000041112.17, intron 1 of 6) protein_coding-intron (ENSMUSG00000041112.17, intron 1 of 21) -101616 ENSMUSG00000050243.6 ENSMUSG00000050243 ENSMUST00000091762 Gm5446 processed_pseudogene Interval_169395 chr9 96924465 96924813 + 0 NA Intergenic Intergenic 19132 ENSMUSG00000101209.1 ENSMUSG00000101209 ENSMUST00000186232 Gm8524 processed_pseudogene Interval_422 chr1 5134570 5135027 + 0 NA intron (ENSMUSG00000033793.12, intron 10 of 12) protein_coding-intron (ENSMUSG00000033793.12, intron 10 of 13) 51666 ENSMUSG00000033793.12 ENSMUSG00000033793 ENSMUST00000192142 Atp6v1h protein_coding Interval_29364 chr11 83448695 83449977 + 0 NA intron (ENSMUSG00000020682.17, intron 3 of 7) protein_coding-intron (ENSMUSG00000020682.17, intron 3 of 7) 9205 ENSMUSG00000035085.5 ENSMUSG00000035085 ENSMUST00000188702 1700020L24Rik protein_coding Interval_81147 chr18 54978651 54979342 + 0 NA intron (ENSMUSG00000052713.9, intron 2 of 9) protein_coding-intron (ENSMUSG00000052713.9, intron 2 of 9) -11269 ENSMUSG00000096948.2 ENSMUSG00000096948 ENSMUST00000181765 Gm4221 antisense Interval_42742 chr13 18841653 18842905 + 0 NA exon (ENSMUSG00000041236.8, exon 18 of 29) protein_coding-exon (ENSMUSG00000041236.8, exon 18 of 29) 62436 ENSMUSG00000041236.8 ENSMUSG00000041236 ENSMUST00000222102 Vps41 protein_coding Interval_61547 chr15 82266241 82266942 + 0 NA Intergenic Intergenic -2211 ENSMUSG00000022456.18 ENSMUSG00000022456 ENSMUST00000230507 Septin3 protein_coding Interval_6167 chr1 98667309 98668807 + 0 NA Intergenic Intergenic 78541 ENSMUSG00000100009.6 ENSMUSG00000100009 ENSMUST00000190991 Gm7967 lincRNA Interval_14663 chr10 38327933 38328149 + 0 NA Intergenic Intergenic -14195 ENSMUSG00000111208.1 ENSMUSG00000111208 ENSMUST00000213800 Gm48197 lincRNA Interval_132009 chr5 142243305 142243719 + 0 NA Intergenic Intergenic -39594 ENSMUSG00000097947.1 ENSMUSG00000097947 ENSMUST00000182990 Gm26970 processed_pseudogene Interval_59916 chr15 61884042 61884261 + 0 NA Intergenic Intergenic 57904 ENSMUSG00000116017.1 ENSMUSG00000116017 ENSMUST00000229370 Gm18154 processed_pseudogene Interval_61627 chr15 83025031 83025861 + 0 NA intron (ENSMUSG00000058099.16, intron 1 of 5) protein_coding-intron (ENSMUSG00000058099.16, intron 1 of 5) -2363 ENSMUSG00000058099.16 ENSMUSG00000058099 ENSMUST00000231204 Nfam1 protein_coding Interval_115623 chr4 101448891 101449365 + 0 NA intron (ENSMUSG00000028527.18, intron 1 of 3) protein_coding-intron (ENSMUSG00000028527.18, intron 3 of 5) 1905 ENSMUSG00000028527.18 ENSMUSG00000028527 ENSMUST00000155749 Ak4 protein_coding Interval_122006 chr5 13729911 13730613 + 0 NA Intergenic Intergenic -33356 ENSMUSG00000105833.1 ENSMUSG00000105833 ENSMUST00000200620 Gm4751 processed_pseudogene Interval_16724 chr10 67217092 67217438 + 0 NA promoter-TSS (ENSMUSG00000037876.17) protein_coding-promoter-TSS (ENSMUSG00000037876.17) 18696 ENSMUSG00000089498.1 ENSMUSG00000089498 ENSMUST00000158873 Gm26359 snRNA Interval_133590 chr6 7261229 7261433 + 0 NA Intergenic Intergenic -40577 ENSMUSG00000098501.7 ENSMUSG00000098501 ENSMUST00000184133 Gm19272 lincRNA Interval_60733 chr15 76426772 76427423 + 0 NA promoter-TSS (ENSMUSG00000022558.16) protein_coding-promoter-TSS (ENSMUSG00000022558.16) -6117 ENSMUSG00000099260.1 ENSMUSG00000099260 ENSMUST00000183412 Mir6954 miRNA Interval_165008 chr9 43845138 43846678 + 0 NA Intergenic Intergenic 60094 ENSMUSG00000088044.1 ENSMUSG00000088044 ENSMUST00000157419 Gm23326 snRNA Interval_52947 chr14 52190803 52191424 + 0 NA intron (ENSMUSG00000035726.8, intron 1 of 25) protein_coding-intron (ENSMUSG00000035726.8, intron 1 of 25) -11049 ENSMUSG00000097533.2 ENSMUSG00000097533 ENSMUST00000227448 Gm26590 antisense Interval_164467 chr9 37248432 37249727 + 0 NA intron (ENSMUSG00000032122.15, intron 1 of 18) protein_coding-intron (ENSMUSG00000032122.15, intron 1 of 17) -3896 ENSMUSG00000090136.4 ENSMUSG00000090136 ENSMUST00000161698 Gm10177 transcribed_processed_pseudogene Interval_70872 chr17 15504592 15505051 + 0 NA TTS (ENSMUSG00000014767.17) protein_coding-TTS (ENSMUSG00000014767.17) 1832 ENSMUSG00000014767.17 ENSMUSG00000014767 ENSMUST00000149518 Tbp protein_coding Interval_174791 chrX 166632192 166632436 + 0 NA Intergenic Intergenic -10772 ENSMUSG00000087677.1 ENSMUSG00000087677 ENSMUST00000156526 Gm15226 lincRNA Interval_53802 chr14 61967679 61967948 + 0 NA Intergenic Intergenic -44506 ENSMUSG00000114368.1 ENSMUSG00000114368 ENSMUST00000224570 Gm47953 processed_pseudogene Interval_115425 chr4 98845290 98847987 + 0 NA Intergenic Intergenic -8976 ENSMUSG00000084188.1 ENSMUSG00000084188 ENSMUST00000117920 Gm12851 processed_pseudogene Interval_170186 chr9 106045962 106046646 + 0 NA intron (ENSMUSG00000032572.9, intron 16 of 37) protein_coding-intron (ENSMUSG00000032572.9, intron 16 of 37) 32774 ENSMUSG00000111796.1 ENSMUSG00000111796 ENSMUST00000213434 Gm47575 antisense Interval_81611 chr18 62079854 62080801 + 0 NA Intergenic Intergenic -62291 ENSMUSG00000118370.1 ENSMUSG00000118370 ENSMUST00000236502 Gm41750 lincRNA Interval_163875 chr9 27367165 27367658 + 0 NA Intergenic Intergenic -18856 ENSMUSG00000110920.1 ENSMUSG00000110920 ENSMUST00000215351 Gm48858 processed_pseudogene Interval_107132 chr3 103773687 103774287 + 0 NA intron (ENSMUSG00000085754.7, intron 1 of 3) protein_coding-intron (ENSMUSG00000008730.17, intron 2 of 15) 2035 ENSMUSG00000085754.7 ENSMUSG00000085754 ENSMUST00000152867 Gm15886 antisense Interval_21135 chr10 126809767 126810920 + 0 NA promoter-TSS (ENSMUSG00000112492.1) processed_pseudogene-promoter-TSS (ENSMUSG00000112492.1) -43 ENSMUSG00000112492.1 ENSMUSG00000112492 ENSMUST00000219394 Gm9111 processed_pseudogene Interval_11328 chr1 180976457 180976997 + 0 NA promoter-TSS (ENSMUSG00000103930.1) unprocessed_pseudogene-promoter-TSS (ENSMUSG00000103930.1) -438 ENSMUSG00000103930.1 ENSMUSG00000103930 ENSMUST00000191980 Gm36961 unprocessed_pseudogene Interval_6193 chr1 100874200 100874926 + 0 NA Intergenic Intergenic 12770 ENSMUSG00000077039.1 ENSMUSG00000077039 ENSMUST00000103851 Gm25537 miRNA Interval_83372 chr18 84670415 84671336 + 0 NA exon (ENSMUSG00000024644.17, exon 8 of 12) protein_coding-exon (ENSMUSG00000024644.17, exon 8 of 12) -11031 ENSMUSG00000092056.2 ENSMUSG00000092056 ENSMUST00000168993 Gm7289 processed_pseudogene Interval_61237 chr15 80145562 80146722 + 0 NA intron (ENSMUSG00000022414.8, intron 1 of 1) protein_coding-intron (ENSMUSG00000022414.8, intron 1 of 10) 13015 ENSMUSG00000022414.8 ENSMUSG00000022414 ENSMUST00000229320 Tab1 protein_coding Interval_4619 chr1 75478850 75479989 + 0 NA promoter-TSS (ENSMUSG00000051703.14) protein_coding-promoter-TSS (ENSMUSG00000051703.14) -285 ENSMUSG00000051703.14 ENSMUSG00000051703 ENSMUST00000187411 Tmem198 protein_coding Interval_139772 chr6 108565173 108565896 + 0 NA promoter-TSS (ENSMUSG00000043024.6) processed_pseudogene-promoter-TSS (ENSMUSG00000043024.6) 54 ENSMUSG00000043024.6 ENSMUSG00000043024 ENSMUST00000062429 Gm16433 processed_pseudogene Interval_102771 chr3 30920367 30920818 + 0 NA TTS (ENSMUSG00000037652.15) protein_coding-TTS (ENSMUSG00000037652.15) 37046 ENSMUSG00000102369.1 ENSMUSG00000102369 ENSMUST00000194340 9530022L04Rik TEC Interval_105428 chr3 86223637 86225234 + 0 NA promoter-TSS (ENSMUSG00000028080.16) protein_coding-promoter-TSS (ENSMUSG00000028080.16) -854 ENSMUSG00000028080.16 ENSMUSG00000028080 ENSMUST00000195524 Lrba protein_coding Interval_138125 chr6 85346165 85346963 + 0 NA intron (ENSMUSG00000051343.11, intron 3 of 5) protein_coding-intron (ENSMUSG00000051343.11, intron 3 of 4) -4927 ENSMUSG00000051343.11 ENSMUSG00000051343 ENSMUST00000204504 Rab11fip5 protein_coding Interval_6817 chr1 119858099 119858482 + 0 NA Intergenic Intergenic -16491 ENSMUSG00000100042.1 ENSMUSG00000100042 ENSMUST00000185404 Gm29658 processed_pseudogene Interval_169089 chr9 92180119 92180832 + 0 NA Intergenic Intergenic -12461 ENSMUSG00000095654.2 ENSMUSG00000095654 ENSMUST00000179751 Plscr5 protein_coding Interval_136776 chr6 59630740 59631233 + 0 NA Intergenic Intergenic 74888 ENSMUSG00000094183.1 ENSMUSG00000094183 ENSMUST00000082870 Gm22622 snoRNA Interval_41361 chr12 113073454 113075569 + 0 NA promoter-TSS (ENSMUSG00000012211.13) protein_coding-promoter-TSS (ENSMUSG00000012211.13) -267 ENSMUSG00000012211.13 ENSMUSG00000012211 ENSMUST00000155492 Tex22 protein_coding Interval_30656 chr11 95712203 95713807 + 0 NA promoter-TSS (ENSMUSG00000075595.9) protein_coding-promoter-TSS (ENSMUSG00000075595.9) -251 ENSMUSG00000086191.1 ENSMUSG00000086191 ENSMUST00000155531 Zfp652os antisense Interval_173069 chrX 70364724 70365535 + 0 NA promoter-TSS (ENSMUSG00000035847.15) protein_coding-promoter-TSS (ENSMUSG00000035847.15) -4038 ENSMUSG00000035847.15 ENSMUSG00000035847 ENSMUST00000130519 Ids protein_coding Interval_48818 chr13 103659498 103660069 + 0 NA intron (ENSMUSG00000114206.1, intron 1 of 3) lincRNA-intron (ENSMUSG00000114206.1, intron 1 of 3) 17857 ENSMUSG00000096642.1 ENSMUSG00000096642 ENSMUST00000179897 Gm24870 snRNA Interval_143678 chr7 14348837 14349054 + 0 NA Intergenic Intergenic -6615 ENSMUSG00000098782.2 ENSMUSG00000098782 ENSMUST00000183899 Mrps36-ps3 processed_pseudogene Interval_103249 chr3 37480894 37481748 + 0 NA intron (ENSMUSG00000027722.14, intron 14 of 16) protein_coding-intron (ENSMUSG00000027722.14, intron 14 of 15) -7506 ENSMUSG00000106166.1 ENSMUSG00000106166 ENSMUST00000198333 Gm43484 TEC Interval_126724 chr5 92309355 92310675 + 0 NA promoter-TSS (ENSMUSG00000029415.4) protein_coding-promoter-TSS (ENSMUSG00000029415.4) 7841 ENSMUSG00000088623.1 ENSMUSG00000088623 ENSMUST00000157998 Gm23031 snRNA Interval_172665 chrX 41776507 41777250 + 0 NA Intergenic Intergenic 29836 ENSMUSG00000037475.15 ENSMUSG00000037475 ENSMUST00000151454 Thoc2 protein_coding Interval_76036 chr17 74508560 74509292 + 0 NA Intergenic Intergenic 17082 ENSMUSG00000024072.9 ENSMUSG00000024072 ENSMUST00000234853 Yipf4 protein_coding Interval_159066 chr8 89317581 89318046 + 0 NA Intergenic Intergenic -130253 ENSMUSG00000069962.3 ENSMUSG00000069962 ENSMUST00000093326 Gm5356 processed_pseudogene Interval_86961 chr19 45223835 45224367 + 0 NA Intergenic Intergenic 11711 ENSMUSG00000025216.9 ENSMUSG00000025216 ENSMUST00000099401 Lbx1 protein_coding Interval_89342 chr2 19553231 19554508 + 0 NA promoter-TSS (ENSMUSG00000026734.9) protein_coding-promoter-TSS (ENSMUSG00000026734.9) 45 ENSMUSG00000026734.9 ENSMUSG00000026734 ENSMUST00000131199 4921504E06Rik protein_coding Interval_134933 chr6 33870306 33872467 + 0 NA intron (ENSMUSG00000029763.17, intron 14 of 17) protein_coding-intron (ENSMUSG00000029763.17, intron 14 of 17) 121025 ENSMUSG00000087441.1 ENSMUSG00000087441 ENSMUST00000155496 Gm13853 lincRNA Interval_153988 chr8 11654318 11654520 + 0 NA TTS (ENSMUSG00000031509.10) protein_coding-TTS (ENSMUSG00000031509.10) 8185 ENSMUSG00000031509.10 ENSMUSG00000031509 ENSMUST00000191350 1700016D06Rik protein_coding Interval_95251 chr2 105213913 105214534 + 0 NA Intergenic Intergenic -10119 ENSMUSG00000055312.2 ENSMUSG00000055312 ENSMUST00000131060 Them7 protein_coding Interval_106199 chr3 94547681 94548288 + 0 NA intron (ENSMUSG00000028136.15, intron 1 of 10) protein_coding-intron (ENSMUSG00000028136.15, intron 2 of 11) -10496 ENSMUSG00000104631.1 ENSMUSG00000104631 ENSMUST00000196327 Gm43774 sense_intronic Interval_172729 chrX 47995521 47995725 + 0 NA Intergenic Intergenic 39230 ENSMUSG00000037010.7 ENSMUSG00000037010 ENSMUST00000039026 Apln protein_coding Interval_19957 chr10 111500054 111500804 + 0 NA promoter-TSS (ENSMUSG00000111997.1) transcribed_processed_pseudogene-promoter-TSS (ENSMUSG00000111997.1) -355 ENSMUSG00000111997.1 ENSMUSG00000111997 ENSMUST00000220267 Gm5176 transcribed_processed_pseudogene Interval_137506 chr6 72800637 72801406 + 0 NA Intergenic Intergenic -49107 ENSMUSG00000104501.1 ENSMUSG00000104501 ENSMUST00000193564 Gm37736 TEC Interval_140705 chr6 120700208 120700504 + 0 NA intron (ENSMUSG00000071226.11, intron 1 of 1) protein_coding-intron (ENSMUSG00000071226.11, intron 1 of 18) -35400 ENSMUSG00000071226.11 ENSMUSG00000071226 ENSMUST00000143563 Cecr2 protein_coding Interval_44434 chr13 44817475 44818835 + 0 NA intron (ENSMUSG00000038518.15, intron 2 of 4) protein_coding-intron (ENSMUSG00000038518.15, intron 2 of 18) 20128 ENSMUSG00000088189.1 ENSMUSG00000088189 ENSMUST00000157564 Gm22213 snoRNA Interval_37167 chr12 59139174 59139836 + 0 NA intron (ENSMUSG00000021000.17, intron 4 of 22) protein_coding-intron (ENSMUSG00000021000.17, intron 4 of 24) 5433 ENSMUSG00000077505.1 ENSMUSG00000077505 ENSMUST00000104317 Gm24233 snoRNA Interval_21567 chr10 130037017 130037472 + 0 NA Intergenic Intergenic 6896 ENSMUSG00000044897.3 ENSMUSG00000044897 ENSMUST00000054364 Olfr821 protein_coding Interval_171585 chr9 119374935 119376143 + 0 NA intron (ENSMUSG00000035769.9, intron 10 of 19) protein_coding-intron (ENSMUSG00000035769.9, intron 9 of 18) -9986 ENSMUSG00000070280.13 ENSMUSG00000070280 ENSMUST00000127794 Slc22a14 protein_coding Interval_67539 chr16 50458890 50459807 + 0 NA Intergenic Intergenic -27039 ENSMUSG00000022641.15 ENSMUSG00000022641 ENSMUST00000130210 Bbx protein_coding Interval_73116 chr17 34902651 34903468 + 0 NA TTS (ENSMUSG00000013787.15) protein_coding-TTS (ENSMUSG00000013787.15) -4341 ENSMUSG00000013787.15 ENSMUSG00000013787 ENSMUST00000124002 Ehmt2 protein_coding Interval_145710 chr7 37586482 37587440 + 0 NA intron (ENSMUSG00000043456.17, intron 3 of 3) protein_coding-intron (ENSMUSG00000043456.17, intron 3 of 5) -18571 ENSMUSG00000043456.17 ENSMUSG00000043456 ENSMUST00000206332 Zfp536 protein_coding Interval_33833 chr11 118834258 118834681 + 0 NA intron (ENSMUSG00000025576.17, intron 1 of 13) protein_coding-intron (ENSMUSG00000025576.17, intron 1 of 14) 18319 ENSMUSG00000077065.1 ENSMUSG00000077065 ENSMUST00000103877 Gm25040 miRNA Interval_111809 chr4 30684047 30684305 + 0 NA intron (ENSMUSG00000085522.1, intron 2 of 6) lincRNA-intron (ENSMUSG00000085522.1, intron 2 of 6) 17881 ENSMUSG00000093947.1 ENSMUSG00000093947 ENSMUST00000102473 Gm22831 miRNA Interval_79877 chr18 35689368 35690466 + 0 NA intron (ENSMUSG00000024350.6, intron 5 of 6) protein_coding-intron (ENSMUSG00000024350.6, intron 3 of 7) -13308 ENSMUSG00000073598.3 ENSMUSG00000073598 ENSMUST00000097617 1700066B19Rik protein_coding Interval_148445 chr7 81310073 81310822 + 0 NA intron (ENSMUSG00000025584.17, intron 4 of 8) protein_coding-intron (ENSMUSG00000025584.17, intron 11 of 21) 3754 ENSMUSG00000025584.17 ENSMUSG00000025584 ENSMUST00000130494 Pde8a protein_coding Interval_146145 chr7 44343215 44344215 + 0 NA TTS (ENSMUSG00000038738.15) protein_coding-TTS (ENSMUSG00000038738.15) 1580 ENSMUSG00000038738.15 ENSMUSG00000038738 ENSMUST00000127164 Shank1 protein_coding Interval_7738 chr1 133353356 133353784 + 0 NA intron (ENSMUSG00000070645.5, intron 1 of 1) protein_coding-intron (ENSMUSG00000070645.5, intron 1 of 8) 1661 ENSMUSG00000070645.5 ENSMUSG00000070645 ENSMUST00000112287 Ren1 protein_coding Interval_45689 chr13 56983496 56983955 + 0 NA Intergenic Intergenic -52777 ENSMUSG00000077279.1 ENSMUSG00000077279 ENSMUST00000104091 Gm22777 snoRNA Interval_126233 chr5 83515796 83516053 + 0 NA Intergenic Intergenic 51130 ENSMUSG00000104537.1 ENSMUSG00000104537 ENSMUST00000196348 Gm44303 miRNA Interval_16509 chr10 63270438 63273064 + 0 NA TTS (ENSMUSG00000112759.1) TEC-TTS (ENSMUSG00000112759.1) 1661 ENSMUSG00000112759.1 ENSMUSG00000112759 ENSMUST00000217955 Gm47615 TEC Interval_116921 chr4 118236199 118236588 + 0 NA promoter-TSS (ENSMUSG00000033295.14) protein_coding-promoter-TSS (ENSMUSG00000033295.14) -25829 ENSMUSG00000098596.1 ENSMUSG00000098596 ENSMUST00000184953 Mir7226 miRNA Interval_35856 chr12 31264750 31266966 + 0 NA intron (ENSMUSG00000002900.17, intron 1 of 32) protein_coding-intron (ENSMUSG00000002900.17, intron 1 of 32) 564 ENSMUSG00000002900.17 ENSMUSG00000002900 ENSMUST00000172134 Lamb1 protein_coding Interval_94059 chr2 83225853 83226099 + 0 NA Intergenic Intergenic -99760 ENSMUSG00000102082.1 ENSMUSG00000102082 ENSMUST00000191096 Gm28675 lincRNA Interval_96563 chr2 125760581 125760844 + 0 NA promoter-TSS (ENSMUSG00000035093.16) protein_coding-promoter-TSS (ENSMUSG00000035093.16) -398 ENSMUSG00000035093.16 ENSMUSG00000035093 ENSMUST00000136450 Secisbp2l protein_coding Interval_162130 chr8 125391321 125392217 + 0 NA Intergenic Intergenic -164446 ENSMUSG00000086694.1 ENSMUSG00000086694 ENSMUST00000156666 Gm16237 antisense Interval_89469 chr2 20846285 20846527 + 0 NA Intergenic Intergenic 13390 ENSMUSG00000036591.16 ENSMUSG00000036591 ENSMUST00000173654 Arhgap21 protein_coding Interval_17293 chr10 75648177 75650205 + 0 NA intron (ENSMUSG00000020196.10, intron 34 of 36) protein_coding-intron (ENSMUSG00000020196.10, intron 34 of 36) -5183 ENSMUSG00000006342.15 ENSMUSG00000006342 ENSMUST00000077610 Susd2 protein_coding Interval_143831 chr7 16601701 16602047 + 0 NA intron (ENSMUSG00000058230.12, intron 2 of 7) protein_coding-intron (ENSMUSG00000058230.12, intron 1 of 6) -11950 ENSMUSG00000100583.6 ENSMUSG00000100583 ENSMUST00000186708 Gm29443 antisense Interval_12122 chr1 189875303 189876138 + 0 NA exon (ENSMUSG00000026604.17, exon 19 of 19) protein_coding-exon (ENSMUSG00000026604.17, exon 19 of 19) -4215 ENSMUSG00000104435.1 ENSMUSG00000104435 ENSMUST00000193794 Gm37422 antisense Interval_121860 chr5 8925290 8925639 + 0 NA intron (ENSMUSG00000042476.12, intron 11 of 19) protein_coding-intron (ENSMUSG00000042476.12, intron 12 of 27) -3262 ENSMUSG00000042476.12 ENSMUSG00000042476 ENSMUST00000197150 Abcb4 protein_coding Interval_63252 chr15 99940423 99942129 + 0 NA exon (ENSMUSG00000045350.15, exon 4 of 8) protein_coding-exon (ENSMUSG00000045350.15, exon 4 of 8) -3835 ENSMUSG00000077443.1 ENSMUSG00000077443 ENSMUST00000104255 Gm23133 snRNA Interval_7414 chr1 131130329 131130811 + 0 NA intron (ENSMUSG00000016526.8, intron 2 of 2) protein_coding-intron (ENSMUSG00000016526.8, intron 2 of 2) 7675 ENSMUSG00000016526.8 ENSMUSG00000016526 ENSMUST00000189756 Dyrk3 protein_coding Interval_39303 chr12 86538618 86539331 + 0 NA Intergenic Intergenic 68857 ENSMUSG00000021255.17 ENSMUSG00000021255 ENSMUST00000136464 Esrrb protein_coding Interval_60773 chr15 76666376 76667461 + 0 NA TTS (ENSMUSG00000004187.11) protein_coding-TTS (ENSMUSG00000004187.11) 2884 ENSMUSG00000033837.5 ENSMUSG00000033837 ENSMUST00000230207 Foxh1 protein_coding Interval_40872 chr12 109005980 109006174 + 0 NA intron (ENSMUSG00000040877.16, intron 4 of 6) protein_coding-intron (ENSMUSG00000040877.16, intron 5 of 7) -14426 ENSMUSG00000113478.1 ENSMUSG00000113478 ENSMUST00000220743 Gm18405 processed_pseudogene Interval_124797 chr5 54156344 54156554 + 0 NA Intergenic Intergenic 40592 ENSMUSG00000039156.19 ENSMUSG00000039156 ENSMUST00000202342 Stim2 protein_coding Interval_155906 chr8 40938194 40940732 + 0 NA exon (ENSMUSG00000031595.9, exon 2 of 2) protein_coding-exon (ENSMUSG00000031595.9, exon 2 of 2) 13251 ENSMUSG00000031595.9 ENSMUSG00000031595 ENSMUST00000034004 Pdgfrl protein_coding Interval_28571 chr11 76795262 76796034 + 0 NA intron (ENSMUSG00000020841.5, intron 12 of 20) protein_coding-intron (ENSMUSG00000020841.5, intron 12 of 20) -4626 ENSMUSG00000020841.5 ENSMUSG00000020841 ENSMUST00000132796 Cpd protein_coding Interval_33414 chr11 116433779 116434855 + 0 NA promoter-TSS (ENSMUSG00000050628.6) protein_coding-promoter-TSS (ENSMUSG00000050628.6) -192 ENSMUSG00000050628.6 ENSMUSG00000050628 ENSMUST00000144310 Ubald2 protein_coding Interval_159319 chr8 93488670 93488883 + 0 NA Intergenic Intergenic -2029 ENSMUSG00000118579.1 ENSMUSG00000118579 ENSMUST00000239350 AC162945.1 unprocessed_pseudogene Interval_71391 chr17 23192499 23193787 + 0 NA promoter-TSS (ENSMUSG00000002617.14) protein_coding-promoter-TSS (ENSMUSG00000002617.14) -1764 ENSMUSG00000002617.14 ENSMUSG00000002617 ENSMUST00000151447 Zfp40 protein_coding Interval_141051 chr6 124683051 124684479 + 0 NA intron (ENSMUSG00000004270.13, intron 1 of 2) protein_coding-intron (ENSMUSG00000004270.13, intron 1 of 12) -18492 ENSMUSG00000004270.13 ENSMUSG00000004270 ENSMUST00000150597 Lpcat3 protein_coding Interval_163256 chr9 20073426 20074155 + 0 NA Intergenic Intergenic -16228 ENSMUSG00000044454.5 ENSMUSG00000044454 ENSMUST00000060780 Olfr867 protein_coding Interval_151818 chr7 126850694 126852207 + 0 NA TTS (ENSMUSG00000030689.15) protein_coding-TTS (ENSMUSG00000030689.15) 3752 ENSMUSG00000052301.14 ENSMUSG00000052301 ENSMUST00000176771 Doc2a protein_coding Interval_129173 chr5 117976315 117977577 + 0 NA promoter-TSS (ENSMUSG00000088085.1) snRNA-promoter-TSS (ENSMUSG00000088085.1) 216 ENSMUSG00000032898.9 ENSMUSG00000032898 ENSMUST00000201889 Fbxo21 protein_coding Interval_18032 chr10 81464383 81466652 + 0 NA intron (ENSMUSG00000034818.17, intron 9 of 11) protein_coding-intron (ENSMUSG00000034818.17, intron 9 of 11) 4358 ENSMUSG00000084849.1 ENSMUSG00000084849 ENSMUST00000156926 Gm16105 antisense Interval_84029 chr19 6829203 6831985 + 0 NA promoter-TSS (ENSMUSG00000104884.1) miRNA-promoter-TSS (ENSMUSG00000104884.1) -650 ENSMUSG00000104884.1 ENSMUSG00000104884 ENSMUST00000199140 Mir5046 miRNA Interval_151294 chr7 120738157 120740619 + 0 NA promoter-TSS (ENSMUSG00000030889.14) protein_coding-promoter-TSS (ENSMUSG00000030889.14) 573 ENSMUSG00000108830.1 ENSMUSG00000108830 ENSMUST00000208830 Gm44661 TEC Interval_110010 chr3 152446142 152446413 + 0 NA intron (ENSMUSG00000039068.16, intron 4 of 6) protein_coding-intron (ENSMUSG00000039068.16, intron 4 of 13) 50145 ENSMUSG00000039068.16 ENSMUSG00000039068 ENSMUST00000135044 Zzz3 protein_coding Interval_97490 chr2 137457215 137457525 + 0 NA Intergenic Intergenic 168867 ENSMUSG00000085504.1 ENSMUSG00000085504 ENSMUST00000130262 Gm14055 lincRNA Interval_39919 chr12 99765166 99766851 + 0 NA intron (ENSMUSG00000021176.6, intron 6 of 6) protein_coding-intron (ENSMUSG00000021176.6, intron 5 of 5) -3754 ENSMUSG00000113877.1 ENSMUSG00000113877 ENSMUST00000220762 Gm47208 TEC Interval_126238 chr5 83749547 83749914 + 0 NA Intergenic Intergenic -26141 ENSMUSG00000077474.1 ENSMUSG00000077474 ENSMUST00000104286 Gm24792 snoRNA Interval_75539 chr17 67898702 67898945 + 0 NA intron (ENSMUSG00000024043.13, intron 2 of 17) protein_coding-intron (ENSMUSG00000024043.13, intron 2 of 17) -25775 ENSMUSG00000024043.13 ENSMUSG00000024043 ENSMUST00000170581 Arhgap28 protein_coding Interval_86240 chr19 38033350 38033575 + 0 NA intron (ENSMUSG00000048612.16, intron 1 of 9) protein_coding-intron (ENSMUSG00000048612.16, intron 1 of 52) 9937 ENSMUSG00000048612.16 ENSMUSG00000048612 ENSMUST00000226084 Myof protein_coding Interval_32059 chr11 104939247 104939441 + 0 NA intron (ENSMUSG00000040838.10, intron 109 of 187) protein_coding-intron (ENSMUSG00000040838.10, intron 109 of 187) 11128 ENSMUSG00000080694.1 ENSMUSG00000080694 ENSMUST00000118253 Gm11621 processed_pseudogene Interval_19637 chr10 106585695 106585935 + 0 NA intron (ENSMUSG00000112201.1, intron 2 of 3) protein_coding-intron (ENSMUSG00000053825.15, intron 3 of 31) 15245 ENSMUSG00000112201.1 ENSMUSG00000112201 ENSMUST00000219229 4930532I03Rik antisense Interval_51263 chr14 25606548 25608494 + 0 NA promoter-TSS (ENSMUSG00000007817.15) protein_coding-promoter-TSS (ENSMUSG00000007817.15) 73082 ENSMUSG00000093081.1 ENSMUSG00000093081 ENSMUST00000175340 Mir3075 miRNA Interval_59253 chr15 49969003 49969756 + 0 NA Intergenic Intergenic 55997 ENSMUSG00000115446.1 ENSMUSG00000115446 ENSMUST00000227486 Gm49186 processed_pseudogene Interval_68906 chr16 88333745 88334312 + 0 NA Intergenic Intergenic -42581 ENSMUSG00000116885.1 ENSMUSG00000116885 ENSMUST00000231479 4930420G21Rik lincRNA Interval_148133 chr7 79410744 79412299 + 0 NA TTS (ENSMUSG00000082400.1) processed_pseudogene-TTS (ENSMUSG00000082400.1) 996 ENSMUSG00000082400.1 ENSMUSG00000082400 ENSMUST00000119834 Gm16017 processed_pseudogene Interval_96512 chr2 125211702 125212052 + 0 NA intron (ENSMUSG00000086416.1, intron 1 of 2) protein_coding-intron (ENSMUSG00000027202.12, intron 20 of 26) 5635 ENSMUSG00000086416.1 ENSMUSG00000086416 ENSMUST00000123574 Gm14002 antisense Interval_166422 chr9 59352925 59353814 + 0 NA promoter-TSS (ENSMUSG00000025235.8) protein_coding-promoter-TSS (ENSMUSG00000025235.8) -25856 ENSMUSG00000025235.8 ENSMUSG00000025235 ENSMUST00000214225 Bbs4 protein_coding Interval_7549 chr1 132153432 132153768 + 0 NA Intergenic Intergenic 14096 ENSMUSG00000099874.1 ENSMUSG00000099874 ENSMUST00000187926 Gm29629 antisense Interval_80434 chr18 42199014 42199327 + 0 NA Intergenic Intergenic -1573 ENSMUSG00000117753.1 ENSMUSG00000117753 ENSMUST00000236748 Gm5504 processed_pseudogene Interval_35841 chr12 31118509 31119242 + 0 NA Intergenic Intergenic -18229 ENSMUSG00000112799.1 ENSMUSG00000112799 ENSMUST00000219793 Gm48100 processed_pseudogene Interval_153140 chr7 141609365 141610566 + 0 NA TTS (ENSMUSG00000097170.1) antisense-TTS (ENSMUSG00000097170.1) 3782 ENSMUSG00000097170.1 ENSMUSG00000097170 ENSMUST00000181275 Gm16982 antisense Interval_22442 chr11 10166885 10168103 + 0 NA Intergenic Intergenic -71843 ENSMUSG00000082312.1 ENSMUSG00000082312 ENSMUST00000117538 Gm11996 processed_pseudogene Interval_79110 chr18 24642342 24642637 + 0 NA Intergenic Intergenic -11389 ENSMUSG00000039616.10 ENSMUSG00000039616 ENSMUST00000234253 Mocos protein_coding Interval_83412 chr18 84977716 84978911 + 0 NA intron (ENSMUSG00000034391.12, intron 9 of 9) protein_coding-intron (ENSMUSG00000034391.12, intron 9 of 9) -26789 ENSMUSG00000024645.5 ENSMUSG00000024645 ENSMUST00000235591 Timm21 protein_coding Interval_94588 chr2 92458877 92460577 + 0 NA promoter-TSS (ENSMUSG00000049922.8) protein_coding-promoter-TSS (ENSMUSG00000049922.8) -18 ENSMUSG00000049922.8 ENSMUSG00000049922 ENSMUST00000136718 Slc35c1 protein_coding Interval_123382 chr5 32053248 32053754 + 0 NA intron (ENSMUSG00000052139.18, intron 1 of 2) protein_coding-intron (ENSMUSG00000052139.18, intron 12 of 13) -42638 ENSMUSG00000106894.1 ENSMUSG00000106894 ENSMUST00000201542 Gm17130 antisense Interval_77333 chr17 88041140 88041654 + 0 NA intron (ENSMUSG00000005371.15, intron 1 of 22) protein_coding-intron (ENSMUSG00000005371.15, intron 1 of 22) 23846 ENSMUSG00000005371.15 ENSMUSG00000005371 ENSMUST00000235056 Fbxo11 protein_coding Interval_149476 chr7 98910149 98910473 + 0 NA intron (ENSMUSG00000035354.9, intron 8 of 10) protein_coding-intron (ENSMUSG00000035354.9, intron 13 of 14) 6043 ENSMUSG00000109130.1 ENSMUSG00000109130 ENSMUST00000207697 Gm45187 antisense Interval_26752 chr11 60220111 60220882 + 0 NA exon (ENSMUSG00000020538.15, exon 1 of 19) protein_coding-exon (ENSMUSG00000020538.15, exon 1 of 19) -17872 ENSMUSG00000020538.15 ENSMUSG00000020538 ENSMUST00000136215 Srebf1 protein_coding Interval_62596 chr15 95185795 95186125 + 0 NA TTS (ENSMUSG00000022454.17) protein_coding-TTS (ENSMUSG00000022454.17) -23566 ENSMUSG00000100603.6 ENSMUSG00000100603 ENSMUST00000185302 1700129L04Rik sense_intronic Interval_105686 chr3 88571585 88573387 + 0 NA Intergenic Intergenic 4653 ENSMUSG00000074479.3 ENSMUSG00000074479 ENSMUST00000098952 Rtraf-ps processed_pseudogene Interval_12546 chr1 195106317 195106506 + 0 NA exon (ENSMUSG00000016481.15, exon 1 of 1) protein_coding-exon (ENSMUSG00000016481.15, exon 1 of 1) 23051 ENSMUSG00000016481.15 ENSMUSG00000016481 ENSMUST00000192405 Cr1l protein_coding Interval_63436 chr15 101081858 101082855 + 0 NA Intergenic Intergenic -3789 ENSMUSG00000095440.2 ENSMUSG00000095440 ENSMUST00000213610 Fignl2 protein_coding Interval_22833 chr11 16476456 16476957 + 0 NA Intergenic Intergenic 31778 ENSMUSG00000078974.10 ENSMUSG00000078974 ENSMUST00000138695 Sec61g protein_coding Interval_89416 chr2 20559394 20560270 + 0 NA promoter-TSS (ENSMUSG00000036617.17) protein_coding-promoter-TSS (ENSMUSG00000036617.17) 28 ENSMUSG00000098575.1 ENSMUSG00000098575 ENSMUST00000183963 Gm27446 misc_RNA Interval_109880 chr3 149363793 149364014 + 0 NA intron (ENSMUSG00000106515.4, intron 1 of 1) lincRNA-intron (ENSMUSG00000106515.4, intron 2 of 3) -22895 ENSMUSG00000089269.1 ENSMUSG00000089269 ENSMUST00000158644 Gm26468 snRNA Interval_60939 chr15 78013581 78013939 + 0 NA intron (ENSMUSG00000019146.2, intron 1 of 3) protein_coding-intron (ENSMUSG00000019146.2, intron 1 of 3) -49988 ENSMUSG00000016554.9 ENSMUSG00000016554 ENSMUST00000229713 Eif3d protein_coding Interval_93607 chr2 74805289 74805529 + 0 NA Intergenic Intergenic -20421 ENSMUSG00000027099.9 ENSMUSG00000027099 ENSMUST00000129284 Mtx2 protein_coding Interval_6561 chr1 116750482 116750667 + 0 NA Intergenic Intergenic -52409 ENSMUSG00000094429.2 ENSMUSG00000094429 ENSMUST00000179777 Gm19965 protein_coding Interval_125842 chr5 74932154 74932721 + 0 NA Intergenic Intergenic -16753 ENSMUSG00000072874.4 ENSMUSG00000072874 ENSMUST00000101121 Gm6116 lincRNA Interval_139870 chr6 112175889 112177302 + 0 NA Intergenic Intergenic -34113 ENSMUSG00000100219.1 ENSMUSG00000100219 ENSMUST00000186102 1700054K19Rik lincRNA Interval_85434 chr19 26139539 26141249 + 0 NA Intergenic Intergenic -93927 ENSMUSG00000118016.1 ENSMUSG00000118016 ENSMUST00000237184 1700048O14Rik processed_transcript Interval_6215 chr1 102256032 102256447 + 0 NA Intergenic Intergenic 94872 ENSMUSG00000099770.1 ENSMUSG00000099770 ENSMUST00000187219 Gm28623 unprocessed_pseudogene Interval_146455 chr7 46044604 46045268 + 0 NA intron (ENSMUSG00000030835.6, intron 6 of 30) protein_coding-intron (ENSMUSG00000030835.6, intron 6 of 30) -9224 ENSMUSG00000030835.6 ENSMUSG00000030835 ENSMUST00000182305 Nomo1 protein_coding Interval_48045 chr13 95533312 95536421 + 0 NA promoter-TSS (ENSMUSG00000113359.1) lincRNA-promoter-TSS (ENSMUSG00000113359.1) -724 ENSMUSG00000113359.1 ENSMUSG00000113359 ENSMUST00000220746 Gm48730 lincRNA Interval_134389 chr6 28133569 28136183 + 0 NA promoter-TSS (ENSMUSG00000024211.15) protein_coding-promoter-TSS (ENSMUSG00000024211.15) -491 ENSMUSG00000024211.15 ENSMUSG00000024211 ENSMUST00000202861 Grm8 protein_coding Interval_58320 chr15 32339211 32339531 + 0 NA intron (ENSMUSG00000022231.10, intron 1 of 7) protein_coding-intron (ENSMUSG00000022231.10, intron 1 of 22) 94546 ENSMUSG00000022231.10 ENSMUSG00000022231 ENSMUST00000227429 Sema5a protein_coding Interval_94976 chr2 102407661 102407996 + 0 NA promoter-TSS (ENSMUSG00000027189.16) protein_coding-promoter-TSS (ENSMUSG00000027189.16) -7571 ENSMUSG00000027189.16 ENSMUSG00000027189 ENSMUST00000144110 Trim44 protein_coding Interval_162120 chr8 125326817 125328209 + 0 NA Intergenic Intergenic -100190 ENSMUSG00000086694.1 ENSMUSG00000086694 ENSMUST00000156666 Gm16237 antisense Interval_128386 chr5 113045430 113046068 + 0 NA Intergenic Intergenic 1605 ENSMUSG00000065373.1 ENSMUSG00000065373 ENSMUST00000083439 Gm22740 snRNA Interval_84182 chr19 8567266 8568151 + 0 NA Intergenic Intergenic 21488 ENSMUSG00000086174.1 ENSMUSG00000086174 ENSMUST00000136332 Gm6425 processed_pseudogene Interval_152393 chr7 132723121 132724621 + 0 NA intron (ENSMUSG00000030956.15, intron 3 of 3) protein_coding-intron (ENSMUSG00000030956.15, intron 4 of 4) -63987 ENSMUSG00000087348.1 ENSMUSG00000087348 ENSMUST00000132849 Gm15582 antisense Interval_137752 chr6 82072814 82073513 + 0 NA intron (ENSMUSG00000035104.14, intron 2 of 2) protein_coding-intron (ENSMUSG00000035104.14, intron 2 of 2) -20582 ENSMUSG00000087136.1 ENSMUSG00000087136 ENSMUST00000145950 Gm15864 antisense Interval_53853 chr14 62772732 62774544 + 0 NA Intergenic Intergenic -6059 ENSMUSG00000115371.1 ENSMUSG00000115371 ENSMUST00000226895 Gm18146 processed_pseudogene Interval_74289 chr17 47916496 47916906 + 0 NA intron (ENSMUSG00000023991.16, intron 1 of 2) protein_coding-intron (ENSMUSG00000023991.16, intron 1 of 16) -5677 ENSMUSG00000085932.1 ENSMUSG00000085932 ENSMUST00000122904 Gm15556 antisense Interval_118740 chr4 133473702 133474059 + 0 NA Intergenic Intergenic -6252 ENSMUSG00000046694.6 ENSMUSG00000046694 ENSMUST00000051676 Tent5b protein_coding Interval_158686 chr8 85230656 85230894 + 0 NA exon (ENSMUSG00000051952.5, exon 1 of 1) protein_coding-exon (ENSMUSG00000051952.5, exon 1 of 1) 4787 ENSMUSG00000051952.5 ENSMUSG00000051952 ENSMUST00000070849 Olfr371 protein_coding Interval_78433 chr18 12824018 12824356 + 0 NA intron (ENSMUSG00000044252.18, intron 1 of 5) protein_coding-intron (ENSMUSG00000044252.18, intron 16 of 27) 37018 ENSMUSG00000044252.18 ENSMUSG00000044252 ENSMUST00000142467 Osbpl1a protein_coding Interval_174786 chrX 166585130 166586017 + 0 NA exon (ENSMUSG00000000402.2, exon 1 of 12) protein_coding-exon (ENSMUSG00000000402.2, exon 1 of 12) 147 ENSMUSG00000000402.2 ENSMUSG00000000402 ENSMUST00000000412 Egfl6 protein_coding Interval_51403 chr14 27246835 27247304 + 0 NA intron (ENSMUSG00000021895.10, intron 1 of 10) protein_coding-intron (ENSMUSG00000021895.10, intron 1 of 10) 9007 ENSMUSG00000114888.1 ENSMUSG00000114888 ENSMUST00000225718 Gm49616 TEC Interval_128235 chr5 111922984 111923625 + 0 NA Intergenic Intergenic 20931 ENSMUSG00000106060.1 ENSMUSG00000106060 ENSMUST00000197648 Gm42488 lincRNA Interval_26422 chr11 57764079 57765307 + 0 NA TTS (ENSMUSG00000065806.1) rRNA-TTS (ENSMUSG00000065806.1) 266 ENSMUSG00000065806.1 ENSMUSG00000065806 ENSMUST00000083872 n-R5s69 rRNA Interval_49645 chr13 113761168 113763394 + 0 NA promoter-TSS (ENSMUSG00000114962.1) processed_pseudogene-promoter-TSS (ENSMUSG00000114962.1) -153 ENSMUSG00000114962.1 ENSMUSG00000114962 ENSMUST00000225360 Gm6343 processed_pseudogene Interval_152826 chr7 138429922 138430131 + 0 NA Intergenic Intergenic 16249 ENSMUSG00000110354.1 ENSMUSG00000110354 ENSMUST00000211580 Gm45686 lincRNA Interval_136842 chr6 61282825 61283168 + 0 NA intron (ENSMUSG00000039578.17, intron 1 of 1) protein_coding-intron (ENSMUSG00000039578.17, intron 1 of 10) -108471 ENSMUSG00000097924.2 ENSMUSG00000097924 ENSMUST00000181288 A730020E08Rik bidirectional_promoter_lncRNA Interval_109876 chr3 149296004 149296239 + 0 NA intron (ENSMUSG00000106515.4, intron 3 of 3) lincRNA-intron (ENSMUSG00000106515.4, intron 2 of 2) -8708 ENSMUSG00000105797.1 ENSMUSG00000105797 ENSMUST00000199768 Gm5149 lincRNA Interval_77359 chr17 88213238 88214273 + 0 NA Intergenic Intergenic 45268 ENSMUSG00000117369.1 ENSMUSG00000117369 ENSMUST00000233989 Gm31499 lincRNA Interval_9975 chr1 164481552 164482407 + 0 NA Intergenic Intergenic -7081 ENSMUSG00000103226.1 ENSMUSG00000103226 ENSMUST00000194377 Gm37732 processed_pseudogene Interval_1047 chr1 14431677 14432313 + 0 NA Intergenic Intergenic -127425 ENSMUSG00000025932.14 ENSMUSG00000025932 ENSMUST00000185329 Eya1 protein_coding Interval_68333 chr16 73380544 73380808 + 0 NA intron (ENSMUSG00000116976.1, intron 3 of 5) processed_transcript-intron (ENSMUSG00000116976.1, intron 1 of 4) 42283 ENSMUSG00000064830.1 ENSMUSG00000064830 ENSMUST00000082896 Gm25699 snRNA Interval_114137 chr4 64046452 64047644 + 0 NA promoter-TSS (ENSMUSG00000028364.15) protein_coding-promoter-TSS (ENSMUSG00000028364.15) -33 ENSMUSG00000028364.15 ENSMUSG00000028364 ENSMUST00000107371 Tnc protein_coding Interval_102630 chr3 28695771 28696332 + 0 NA Intergenic Intergenic -25466 ENSMUSG00000027690.13 ENSMUSG00000027690 ENSMUST00000169047 Slc2a2 protein_coding Interval_72077 chr17 27878415 27878940 + 0 NA intron (ENSMUSG00000039512.12, intron 4 of 4) protein_coding-intron (ENSMUSG00000039512.12, intron 4 of 20) -9699 ENSMUSG00000117161.1 ENSMUSG00000117161 ENSMUST00000233253 Gm49803 processed_pseudogene Interval_79661 chr18 34317542 34318295 + 0 NA exon (ENSMUSG00000005871.15, exon 16 of 16) protein_coding-exon (ENSMUSG00000005871.15, exon 16 of 16) -13258 ENSMUSG00000014504.16 ENSMUSG00000014504 ENSMUST00000142010 Srp19 protein_coding Interval_133146 chr5 150171770 150172256 + 0 NA intron (ENSMUSG00000056602.12, intron 1 of 6) protein_coding-intron (ENSMUSG00000056602.12, intron 1 of 4) -71850 ENSMUSG00000107082.1 ENSMUSG00000107082 ENSMUST00000201709 Gm36378 processed_pseudogene Interval_127044 chr5 99905801 99907153 + 0 NA intron (ENSMUSG00000105078.2, intron 1 of 3) protein_coding-intron (ENSMUSG00000105078.2, intron 1 of 5) 210 ENSMUSG00000105078.2 ENSMUSG00000105078 ENSMUST00000200398 Vamp9 protein_coding Interval_159082 chr8 89849947 89850397 + 0 NA Intergenic Intergenic -182868 ENSMUSG00000088883.1 ENSMUSG00000088883 ENSMUST00000158258 Gm24212 snoRNA Interval_170766 chr9 110623739 110625489 + 0 NA promoter-TSS (ENSMUSG00000032491.14) protein_coding-promoter-TSS (ENSMUSG00000032491.14) -183 ENSMUSG00000032491.14 ENSMUSG00000032491 ENSMUST00000197894 Nradd protein_coding Interval_8189 chr1 136377691 136378429 + 0 NA Intergenic Intergenic 37434 ENSMUSG00000097403.2 ENSMUSG00000097403 ENSMUST00000194227 9230116N13Rik processed_transcript Interval_24183 chr11 31069238 31069584 + 0 NA intron (ENSMUSG00000020305.13, intron 7 of 9) protein_coding-intron (ENSMUSG00000020305.13, intron 7 of 9) -50592 ENSMUSG00000082049.1 ENSMUSG00000082049 ENSMUST00000120846 Gm12105 processed_pseudogene Interval_146307 chr7 45240626 45241418 + 0 NA promoter-TSS (ENSMUSG00000094152.5) protein_coding-promoter-TSS (ENSMUSG00000094152.5) -63 ENSMUSG00000094152.5 ENSMUSG00000094152 ENSMUST00000210163 Slc6a16 protein_coding Interval_61808 chr15 84297808 84298011 + 0 NA intron (ENSMUSG00000022438.6, intron 7 of 12) protein_coding-intron (ENSMUSG00000022438.6, intron 7 of 12) 25443 ENSMUSG00000089267.1 ENSMUSG00000089267 ENSMUST00000158642 Gm22890 snoRNA Interval_58298 chr15 31960445 31960889 + 0 NA Intergenic Intergenic -89284 ENSMUSG00000115561.1 ENSMUSG00000115561 ENSMUST00000227417 Gm49285 TEC Interval_1933 chr1 34677656 34678760 + 0 NA promoter-TSS (ENSMUSG00000037509.21) protein_coding-promoter-TSS (ENSMUSG00000037509.21) -42019 ENSMUSG00000104098.1 ENSMUSG00000104098 ENSMUST00000195095 AA619741 processed_pseudogene Interval_16785 chr10 68145902 68147088 + 0 NA intron (ENSMUSG00000019947.10, intron 4 of 10) protein_coding-intron (ENSMUSG00000019947.10, intron 4 of 10) -119869 ENSMUSG00000086838.1 ENSMUSG00000086838 ENSMUST00000143555 Gm16212 antisense Interval_43731 chr13 35833888 35834710 + 0 NA intron (ENSMUSG00000059288.14, intron 2 of 6) protein_coding-intron (ENSMUSG00000059288.14, intron 5 of 9) 35549 ENSMUSG00000114555.1 ENSMUSG00000114555 ENSMUST00000224988 Gm48706 TEC Interval_107945 chr3 117092289 117093584 + 0 NA Intergenic Intergenic 8578 ENSMUSG00000106343.1 ENSMUSG00000106343 ENSMUST00000197534 Gm18430 processed_pseudogene Interval_162395 chr8 127917260 127918238 + 0 NA Intergenic Intergenic 320043 ENSMUSG00000088580.1 ENSMUSG00000088580 ENSMUST00000157955 Gm22968 rRNA Interval_45656 chr13 56601333 56602181 + 0 NA Intergenic Intergenic 6220 ENSMUSG00000114604.1 ENSMUSG00000114604 ENSMUST00000224345 2010203P06Rik lincRNA Interval_102798 chr3 31134177 31134766 + 0 NA Intergenic Intergenic -15449 ENSMUSG00000037625.7 ENSMUSG00000037625 ENSMUST00000046174 Cldn11 protein_coding Interval_83009 chr18 80339778 80340441 + 0 NA intron (ENSMUSG00000059852.7, intron 1 of 1) protein_coding-intron (ENSMUSG00000059852.7, intron 2 of 3) 16774 ENSMUSG00000097593.2 ENSMUSG00000097593 ENSMUST00000181877 Gm26676 antisense Interval_149408 chr7 98193411 98195467 + 0 NA exon (ENSMUSG00000074004.3, exon 2 of 2) protein_coding-exon (ENSMUSG00000074004.3, exon 2 of 2) 5042 ENSMUSG00000074004.3 ENSMUSG00000074004 ENSMUST00000098278 B3gnt6 protein_coding Interval_27531 chr11 68485139 68485951 + 0 NA intron (ENSMUSG00000020901.13, intron 3 of 7) protein_coding-intron (ENSMUSG00000020901.13, intron 5 of 18) 10064 ENSMUSG00000020901.13 ENSMUSG00000020901 ENSMUST00000155887 Pik3r5 protein_coding Interval_81225 chr18 56620694 56622468 + 0 NA promoter-TSS (ENSMUSG00000118153.1) lincRNA-promoter-TSS (ENSMUSG00000118153.1) -484 ENSMUSG00000118153.1 ENSMUSG00000118153 ENSMUST00000236670 Gm50288 lincRNA Interval_122912 chr5 27274860 27275352 + 0 NA intron (ENSMUSG00000061576.15, intron 1 of 25) protein_coding-intron (ENSMUSG00000061576.15, intron 1 of 25) 56921 ENSMUSG00000106537.1 ENSMUSG00000106537 ENSMUST00000200263 Gm43502 TEC Interval_105970 chr3 90360559 90361080 + 0 NA exon (ENSMUSG00000042390.9, exon 11 of 11) protein_coding-exon (ENSMUSG00000042390.9, exon 11 of 11) 9401 ENSMUSG00000042390.9 ENSMUSG00000042390 ENSMUST00000206907 Gatad2b protein_coding Interval_84369 chr19 10421711 10423334 + 0 NA TTS (ENSMUSG00000024743.16) protein_coding-TTS (ENSMUSG00000024743.16) -17375 ENSMUSG00000118310.1 ENSMUSG00000118310 ENSMUST00000238123 Gm50268 TEC Interval_247 KZ289068.1 289359 289711 + 0 NA NA NA NA NA Interval_71441 chr17 23763288 23763901 + 0 NA promoter-TSS (ENSMUSG00000040097.16) protein_coding-promoter-TSS (ENSMUSG00000040097.16) -1667 ENSMUSG00000115692.1 ENSMUSG00000115692 ENSMUST00000228934 Gm49163 antisense Interval_156124 chr8 44971079 44972360 + 0 NA intron (ENSMUSG00000070047.14, intron 1 of 28) protein_coding-intron (ENSMUSG00000070047.14, intron 1 of 25) 21505 ENSMUSG00000070047.14 ENSMUSG00000070047 ENSMUST00000189367 Fat1 protein_coding Interval_13263 chr10 13707326 13707733 + 0 NA intron (ENSMUSG00000019806.13, intron 3 of 5) protein_coding-intron (ENSMUSG00000019806.13, intron 3 of 5) 80331 ENSMUSG00000112055.1 ENSMUSG00000112055 ENSMUST00000219684 Gm48773 lincRNA Interval_87271 chr19 47325543 47326144 + 0 NA intron (ENSMUSG00000053617.12, intron 6 of 13) protein_coding-intron (ENSMUSG00000053617.12, intron 6 of 14) -52254 ENSMUSG00000098786.1 ENSMUSG00000098786 ENSMUST00000183658 Mir6995 miRNA Interval_152057 chr7 128669081 128669561 + 0 NA TTS (ENSMUSG00000042105.18) protein_coding-TTS (ENSMUSG00000042105.18) -19168 ENSMUSG00000042105.18 ENSMUSG00000042105 ENSMUST00000118605 Inpp5f protein_coding Interval_48419 chr13 98905565 98906198 + 0 NA intron (ENSMUSG00000009470.17, intron 1 of 6) protein_coding-intron (ENSMUSG00000009470.17, intron 1 of 23) 1657 ENSMUSG00000062461.7 ENSMUSG00000062461 ENSMUST00000080866 Rpl27a-ps4 processed_pseudogene Interval_113567 chr4 56753534 56753907 + 0 NA intron (ENSMUSG00000028431.11, intron 2 of 2) protein_coding-intron (ENSMUSG00000028431.11, intron 36 of 36) 3565 ENSMUSG00000028431.11 ENSMUSG00000028431 ENSMUST00000126441 Elp1 protein_coding Interval_102492 chr3 27182503 27184164 + 0 NA intron (ENSMUSG00000027698.14, intron 1 of 2) protein_coding-intron (ENSMUSG00000027698.14, intron 1 of 4) -5108 ENSMUSG00000027698.14 ENSMUSG00000027698 ENSMUST00000140872 Nceh1 protein_coding Interval_75830 chr17 71675091 71675335 + 0 NA intron (ENSMUSG00000045761.16, intron 1 of 2) protein_coding-intron (ENSMUSG00000045761.16, intron 1 of 19) -9592 ENSMUSG00000045761.16 ENSMUSG00000045761 ENSMUST00000129072 Togaram2 protein_coding Interval_169178 chr9 95198207 95198401 + 0 NA intron (ENSMUSG00000031129.9, intron 14 of 15) protein_coding-intron (ENSMUSG00000031129.9, intron 14 of 15) -205620 ENSMUSG00000111087.1 ENSMUSG00000111087 ENSMUST00000214362 Gm47168 processed_pseudogene Interval_169253 chr9 95835623 95835803 + 0 NA intron (ENSMUSG00000049493.13, intron 1 of 15) protein_coding-intron (ENSMUSG00000049493.13, intron 1 of 15) 9598 ENSMUSG00000049493.13 ENSMUSG00000049493 ENSMUST00000135816 Pls1 protein_coding Interval_56459 chr14 118909994 118911114 + 0 NA intron (ENSMUSG00000042156.16, intron 3 of 16) protein_coding-intron (ENSMUSG00000042156.16, intron 7 of 21) -20891 ENSMUSG00000042156.16 ENSMUSG00000042156 ENSMUST00000226919 Dzip1 protein_coding Interval_34577 chr12 5319356 5320247 + 0 NA intron (ENSMUSG00000020627.10, intron 1 of 13) protein_coding-intron (ENSMUSG00000020627.10, intron 1 of 13) -28420 ENSMUSG00000020627.10 ENSMUSG00000020627 ENSMUST00000218384 Klhl29 protein_coding Interval_43494 chr13 31884156 31884901 + 0 NA intron (ENSMUSG00000083149.2, intron 1 of 1) protein_coding-intron (ENSMUSG00000038372.14, intron 9 of 10) 303 ENSMUSG00000083149.2 ENSMUSG00000083149 ENSMUST00000118067 Gm11380 processed_pseudogene Interval_120534 chr4 149175071 149175530 + 0 NA Intergenic Intergenic -8529 ENSMUSG00000028961.15 ENSMUSG00000028961 ENSMUST00000143944 Pgd protein_coding Interval_143931 chr7 18107328 18108464 + 0 NA intron (ENSMUSG00000108545.1, intron 1 of 3) antisense-intron (ENSMUSG00000108545.1, intron 1 of 4) 41957 ENSMUSG00000030366.10 ENSMUSG00000030366 ENSMUST00000108483 Ceacam12 protein_coding Interval_113662 chr4 57369834 57370294 + 0 NA TTS (ENSMUSG00000095042.1) processed_pseudogene-TTS (ENSMUSG00000095042.1) 1890 ENSMUSG00000095042.1 ENSMUSG00000095042 ENSMUST00000119266 Gm12537 processed_pseudogene Interval_68954 chr16 89659138 89660308 + 0 NA Intergenic Intergenic -25583 ENSMUSG00000116651.1 ENSMUSG00000116651 ENSMUST00000232201 Gm17844 processed_pseudogene Interval_75382 chr17 66273779 66274060 + 0 NA Intergenic Intergenic -37550 ENSMUSG00000117220.1 ENSMUSG00000117220 ENSMUST00000233452 Gm49932 lincRNA Interval_68349 chr16 73865885 73867146 + 0 NA Intergenic Intergenic 95345 ENSMUSG00000052516.19 ENSMUSG00000052516 ENSMUST00000156010 Robo2 protein_coding Interval_104881 chr3 77897195 77897460 + 0 NA Intergenic Intergenic -24174 ENSMUSG00000102393.1 ENSMUSG00000102393 ENSMUST00000194228 Gm37576 processed_pseudogene Interval_53700 chr14 60975754 60976754 + 0 NA promoter-TSS (ENSMUSG00000060548.13) protein_coding-promoter-TSS (ENSMUSG00000060548.13) 61637 ENSMUSG00000060548.13 ENSMUSG00000060548 ENSMUST00000225730 Tnfrsf19 protein_coding Interval_131053 chr5 134783494 134784179 + 0 NA intron (ENSMUSG00000107318.1, intron 2 of 4) antisense-intron (ENSMUSG00000107318.1, intron 2 of 4) 36794 ENSMUSG00000107318.1 ENSMUSG00000107318 ENSMUST00000200700 Gm30003 antisense Interval_170122 chr9 105045467 105046859 + 0 NA Intergenic Intergenic -18614 ENSMUSG00000104344.1 ENSMUSG00000104344 ENSMUST00000193657 Gm38077 TEC Interval_51799 chr14 32277006 32277198 + 0 NA intron (ENSMUSG00000021911.16, intron 1 of 4) protein_coding-intron (ENSMUSG00000021911.16, intron 15 of 17) 1395 ENSMUSG00000021911.16 ENSMUSG00000021911 ENSMUST00000171871 Parg protein_coding Interval_67858 chr16 58207559 58207835 + 0 NA Intergenic Intergenic -30407 ENSMUSG00000116717.1 ENSMUSG00000116717 ENSMUST00000231686 Gm49574 lincRNA Interval_42158 chr13 9293888 9294546 + 0 NA intron (ENSMUSG00000048264.16, intron 1 of 36) protein_coding-intron (ENSMUSG00000048264.16, intron 1 of 38) -21096 ENSMUSG00000113755.1 ENSMUSG00000113755 ENSMUST00000220704 Gm46391 processed_pseudogene Interval_85207 chr19 23771779 23772364 + 0 NA intron (ENSMUSG00000024897.9, intron 1 of 12) protein_coding-intron (ENSMUSG00000024897.9, intron 1 of 12) -24070 ENSMUSG00000117685.1 ENSMUSG00000117685 ENSMUST00000238019 Gm50299 lincRNA Interval_153891 chr8 10767973 10768873 + 0 NA intron (ENSMUSG00000109271.1, intron 3 of 3) lincRNA-intron (ENSMUSG00000109271.1, intron 3 of 3) 29533 ENSMUSG00000109271.1 ENSMUSG00000109271 ENSMUST00000207553 Gm39129 lincRNA Interval_76085 chr17 74810436 74811729 + 0 NA intron (ENSMUSG00000024078.7, intron 6 of 13) protein_coding-intron (ENSMUSG00000024078.7, intron 13 of 19) 8829 ENSMUSG00000117444.1 ENSMUSG00000117444 ENSMUST00000234963 Gm50020 antisense Interval_36316 chr12 41094365 41094818 + 0 NA intron (ENSMUSG00000056899.10, intron 3 of 3) protein_coding-intron (ENSMUSG00000056899.10, intron 1 of 1) -49652 ENSMUSG00000113994.1 ENSMUSG00000113994 ENSMUST00000220956 Gm47375 antisense Interval_31722 chr11 102465850 102467819 + 0 NA TTS (ENSMUSG00000034664.13) protein_coding-TTS (ENSMUSG00000034664.13) -7860 ENSMUSG00000092641.2 ENSMUSG00000092641 ENSMUST00000174900 Gm23563 misc_RNA Interval_132163 chr5 143022554 143023601 + 0 NA intron (ENSMUSG00000045078.12, intron 14 of 16) protein_coding-intron (ENSMUSG00000045078.12, intron 14 of 16) 26966 ENSMUSG00000106543.1 ENSMUSG00000106543 ENSMUST00000199336 Gm43378 sense_intronic Interval_127030 chr5 99737728 99739673 + 0 NA intron (ENSMUSG00000105218.4, intron 5 of 11) lincRNA-intron (ENSMUSG00000105218.4, intron 5 of 11) -9888 ENSMUSG00000089809.9 ENSMUSG00000089809 ENSMUST00000161148 Rasgef1b protein_coding Interval_123617 chr5 33851812 33852022 + 0 NA intron (ENSMUSG00000057406.16, intron 2 of 20) protein_coding-intron (ENSMUSG00000057406.16, intron 2 of 20) -26298 ENSMUSG00000057406.16 ENSMUSG00000057406 ENSMUST00000201572 Nsd2 protein_coding Interval_153424 chr7 144669705 144670094 + 0 NA promoter-TSS (ENSMUSG00000031075.19) protein_coding-promoter-TSS (ENSMUSG00000031075.19) 68667 ENSMUSG00000031075.19 ENSMUSG00000031075 ENSMUST00000131731 Ano1 protein_coding Interval_140377 chr6 117660503 117660901 + 0 NA intron (ENSMUSG00000099869.6, intron 2 of 3) lincRNA-intron (ENSMUSG00000099869.6, intron 3 of 4) -48132 ENSMUSG00000107785.1 ENSMUSG00000107785 ENSMUST00000205216 Gm45083 lincRNA Interval_72997 chr17 34057567 34057830 + 0 NA intron (ENSMUSG00000024330.17, intron 35 of 62) protein_coding-intron (ENSMUSG00000024330.17, intron 36 of 63) 18226 ENSMUSG00000024330.17 ENSMUSG00000024330 ENSMUST00000144927 Col11a2 protein_coding Interval_76400 chr17 79948976 79950478 + 0 NA Intergenic Intergenic -15155 ENSMUSG00000117458.1 ENSMUSG00000117458 ENSMUST00000234229 Gm6552 processed_pseudogene Interval_96485 chr2 124919454 124919761 + 0 NA Intergenic Intergenic -160748 ENSMUSG00000035183.14 ENSMUSG00000035183 ENSMUST00000149963 Slc24a5 protein_coding Interval_139594 chr6 102003456 102003719 + 0 NA Intergenic Intergenic -67879 ENSMUSG00000108177.1 ENSMUSG00000108177 ENSMUST00000203975 Gm7924 processed_pseudogene Interval_102048 chr3 16125104 16126308 + 0 NA Intergenic Intergenic -9763 ENSMUSG00000088874.1 ENSMUSG00000088874 ENSMUST00000158249 Gm25863 ribozyme Interval_96343 chr2 121797077 121797575 + 0 NA intron (ENSMUSG00000027238.17, intron 1 of 7) protein_coding-intron (ENSMUSG00000027238.17, intron 1 of 13) 69391 ENSMUSG00000086913.1 ENSMUSG00000086913 ENSMUST00000131514 Gm14019 antisense Interval_53642 chr14 60513225 60514247 + 0 NA intron (ENSMUSG00000101797.1, intron 2 of 2) lincRNA-intron (ENSMUSG00000101797.1, intron 2 of 2) 28528 ENSMUSG00000101797.1 ENSMUSG00000101797 ENSMUST00000190392 Gm29266 lincRNA Interval_86735 chr19 43493148 43493921 + 0 NA promoter-TSS (ENSMUSG00000025189.9) protein_coding-promoter-TSS (ENSMUSG00000025189.9) 21860 ENSMUSG00000025189.9 ENSMUSG00000025189 ENSMUST00000225191 Cnnm1 protein_coding Interval_49832 chr13 116811301 116812052 + 0 NA intron (ENSMUSG00000114290.1, intron 3 of 3) lincRNA-intron (ENSMUSG00000114290.1, intron 3 of 3) 26502 ENSMUSG00000114290.1 ENSMUSG00000114290 ENSMUST00000224552 4930435F18Rik lincRNA Interval_110622 chr4 4944345 4944723 + 0 NA Intergenic Intergenic 34340 ENSMUSG00000083228.1 ENSMUSG00000083228 ENSMUST00000118541 Gm11779 processed_pseudogene Interval_103652 chr3 51408374 51409456 + 0 NA promoter-TSS (ENSMUSG00000037152.11) protein_coding-promoter-TSS (ENSMUSG00000037152.11) 49 ENSMUSG00000037152.11 ENSMUSG00000037152 ENSMUST00000193279 Ndufc1 protein_coding Interval_80833 chr18 47997838 47998571 + 0 NA intron (ENSMUSG00000118267.1, intron 1 of 4) sense_overlapping-intron (ENSMUSG00000118267.1, intron 1 of 4) -48443 ENSMUSG00000059040.5 ENSMUSG00000059040 ENSMUST00000235307 Eno1b protein_coding Interval_115640 chr4 101536436 101536639 + 0 NA intron (ENSMUSG00000028528.17, intron 2 of 6) protein_coding-intron (ENSMUSG00000028528.17, intron 1 of 18) -18558 ENSMUSG00000089446.1 ENSMUSG00000089446 ENSMUST00000158821 Gm22533 misc_RNA Interval_171007 chr9 113669751 113671791 + 0 NA intron (ENSMUSG00000032504.15, intron 12 of 17) protein_coding-intron (ENSMUSG00000032504.15, intron 12 of 17) 26806 ENSMUSG00000032504.15 ENSMUSG00000032504 ENSMUST00000156425 Pdcd6ip protein_coding Interval_12228 chr1 190978310 190979771 + 0 NA promoter-TSS (ENSMUSG00000037568.12) protein_coding-promoter-TSS (ENSMUSG00000037568.12) 174 ENSMUSG00000037568.12 ENSMUSG00000037568 ENSMUST00000192306 Vash2 protein_coding Interval_164572 chr9 39042406 39042777 + 0 NA Intergenic Intergenic 4959 ENSMUSG00000095194.2 ENSMUSG00000095194 ENSMUST00000216912 Olfr936 polymorphic_pseudogene Interval_65687 chr16 25376455 25377351 + 0 NA intron (ENSMUSG00000048399.4, intron 4 of 5) protein_coding-intron (ENSMUSG00000048399.4, intron 4 of 5) 66370 ENSMUSG00000116828.1 ENSMUSG00000116828 ENSMUST00000232460 Gm18896 processed_pseudogene Interval_126319 chr5 86580102 86580509 + 0 NA intron (ENSMUSG00000048764.16, intron 2 of 2) protein_coding-intron (ENSMUSG00000048764.16, intron 2 of 10) 52078 ENSMUSG00000048764.16 ENSMUSG00000048764 ENSMUST00000173259 Tmprss11f protein_coding Interval_32155 chr11 105700449 105700801 + 0 NA intron (ENSMUSG00000053580.16, intron 1 of 3) protein_coding-intron (ENSMUSG00000053580.16, intron 3 of 25) 27203 ENSMUSG00000053580.16 ENSMUSG00000053580 ENSMUST00000147975 Tanc2 protein_coding Interval_2398 chr1 38994494 38994974 + 0 NA promoter-TSS (ENSMUSG00000026078.10) protein_coding-promoter-TSS (ENSMUSG00000026078.10) 2056 ENSMUSG00000103046.1 ENSMUSG00000103046 ENSMUST00000194994 Gm37309 TEC Interval_25701 chr11 50877121 50879159 + 0 NA TTS (ENSMUSG00000048728.15) protein_coding-TTS (ENSMUSG00000048728.15) 9361 ENSMUSG00000048728.15 ENSMUSG00000048728 ENSMUST00000136599 Zfp454 protein_coding Interval_159540 chr8 95337586 95337920 + 0 NA intron (ENSMUSG00000031792.15, intron 2 of 2) protein_coding-intron (ENSMUSG00000031792.15, intron 2 of 6) 5450 ENSMUSG00000031792.15 ENSMUSG00000031792 ENSMUST00000151223 Usb1 protein_coding Interval_65447 chr16 22389152 22389759 + 0 NA intron (ENSMUSG00000013089.15, intron 2 of 3) protein_coding-intron (ENSMUSG00000013089.15, intron 11 of 12) 12374 ENSMUSG00000013089.15 ENSMUSG00000013089 ENSMUST00000170393 Etv5 protein_coding Interval_111206 chr4 14825967 14827092 + 0 NA promoter-TSS (ENSMUSG00000040550.17) protein_coding-promoter-TSS (ENSMUSG00000040550.17) 58 ENSMUSG00000040550.17 ENSMUSG00000040550 ENSMUST00000151012 Otud6b protein_coding Interval_99555 chr2 163146153 163146719 + 0 NA Intergenic Intergenic 9670 ENSMUSG00000086036.1 ENSMUSG00000086036 ENSMUST00000136371 Gm14254 lincRNA Interval_148409 chr7 81093473 81095283 + 0 NA promoter-TSS (ENSMUSG00000038763.12) protein_coding-promoter-TSS (ENSMUSG00000038763.12) -453 ENSMUSG00000038763.12 ENSMUSG00000038763 ENSMUST00000151115 Alpk3 protein_coding Interval_63264 chr15 100005988 100006187 + 0 NA TTS (ENSMUSG00000023025.16) protein_coding-TTS (ENSMUSG00000023025.16) -32800 ENSMUSG00000100084.2 ENSMUSG00000100084 ENSMUST00000188271 2310068J16Rik antisense Interval_134751 chr6 31209971 31210552 + 0 NA intron (ENSMUSG00000044471.12, intron 1 of 3) lincRNA-intron (ENSMUSG00000044471.12, intron 1 of 3) 6105 ENSMUSG00000044471.12 ENSMUSG00000044471 ENSMUST00000229779 Lncpint lincRNA Interval_10386 chr1 170199778 170200945 + 0 NA intron (ENSMUSG00000026667.14, intron 6 of 6) protein_coding-intron (ENSMUSG00000026667.14, intron 7 of 7) 14373 ENSMUSG00000026667.14 ENSMUSG00000026667 ENSMUST00000123399 Uhmk1 protein_coding Interval_146658 chr7 49235351 49235775 + 0 NA intron (ENSMUSG00000052512.17, intron 2 of 39) protein_coding-intron (ENSMUSG00000052512.17, intron 2 of 39) 40022 ENSMUSG00000103834.1 ENSMUSG00000103834 ENSMUST00000195677 Gm37613 TEC Interval_18935 chr10 93257732 93258270 + 0 NA intron (ENSMUSG00000008398.16, intron 2 of 3) protein_coding-intron (ENSMUSG00000008398.16, intron 3 of 4) 18978 ENSMUSG00000020015.10 ENSMUSG00000020015 ENSMUST00000216729 Cdk17 protein_coding Interval_105984 chr3 90450958 90452108 + 0 NA promoter-TSS (ENSMUSG00000087411.1) antisense-promoter-TSS (ENSMUSG00000087411.1) -50 ENSMUSG00000087411.1 ENSMUSG00000087411 ENSMUST00000134250 Gm16048 antisense Interval_143734 chr7 15975824 15976392 + 0 NA intron (ENSMUSG00000070808.4, intron 11 of 14) protein_coding-intron (ENSMUSG00000070808.4, intron 10 of 13) 4225 ENSMUSG00000109984.1 ENSMUSG00000109984 ENSMUST00000210035 Gm38948 lincRNA Interval_142695 chr6 145037753 145038614 + 0 NA promoter-TSS (ENSMUSG00000088867.1) rRNA-promoter-TSS (ENSMUSG00000088867.1) 5 ENSMUSG00000088867.1 ENSMUSG00000088867 ENSMUST00000158242 Gm23071 rRNA Interval_142878 chr6 146631649 146632245 + 0 NA intron (ENSMUSG00000040234.16, intron 1 of 3) protein_coding-intron (ENSMUSG00000040234.16, intron 1 of 11) -10644 ENSMUSG00000030291.12 ENSMUSG00000030291 ENSMUST00000075077 Med21 protein_coding Interval_19884 chr10 110906336 110906883 + 0 NA Intergenic Intergenic -1709 ENSMUSG00000087718.1 ENSMUSG00000087718 ENSMUST00000157093 Gm22236 snRNA Interval_54716 chr14 73535629 73535816 + 0 NA intron (ENSMUSG00000033405.4, intron 1 of 4) protein_coding-intron (ENSMUSG00000033405.4, intron 1 of 4) -10511 ENSMUSG00000033405.4 ENSMUSG00000033405 ENSMUST00000226903 Nudt15 protein_coding Interval_1594 chr1 28675355 28676191 + 0 NA Intergenic Intergenic -95001 ENSMUSG00000086240.4 ENSMUSG00000086240 ENSMUST00000145844 Gm7846 processed_pseudogene Interval_137591 chr6 74015326 74015552 + 0 NA Intergenic Intergenic -129590 ENSMUSG00000107646.1 ENSMUSG00000107646 ENSMUST00000203582 Gm44225 processed_pseudogene Interval_93854 chr2 77515211 77515937 + 0 NA intron (ENSMUSG00000027016.17, intron 3 of 9) protein_coding-intron (ENSMUSG00000027016.17, intron 1 of 7) 52905 ENSMUSG00000085845.7 ENSMUSG00000085845 ENSMUST00000126572 Gm13944 antisense Interval_32456 chr11 107654428 107654632 + 0 NA intron (ENSMUSG00000020721.16, intron 7 of 13) protein_coding-intron (ENSMUSG00000020721.16, intron 22 of 31) -16522 ENSMUSG00000020721.16 ENSMUSG00000020721 ENSMUST00000153080 Helz protein_coding Interval_48707 chr13 101753507 101754098 + 0 NA promoter-TSS (ENSMUSG00000102635.1) TEC-promoter-TSS (ENSMUSG00000102635.1) -597 ENSMUSG00000102635.1 ENSMUSG00000102635 ENSMUST00000193295 Gm36638 TEC Interval_74598 chr17 53611711 53612548 + 0 NA intron (ENSMUSG00000000708.14, intron 2 of 5) protein_coding-intron (ENSMUSG00000000708.14, intron 2 of 17) -13466 ENSMUSG00000096517.1 ENSMUSG00000096517 ENSMUST00000180049 Gm6919 processed_pseudogene Interval_74678 chr17 55891418 55892654 + 0 NA promoter-TSS (ENSMUSG00000003198.10) protein_coding-promoter-TSS (ENSMUSG00000003198.10) -57 ENSMUSG00000003198.10 ENSMUSG00000003198 ENSMUST00000224294 Zfp959 protein_coding Interval_162154 chr8 125551847 125552836 + 0 NA intron (ENSMUSG00000001995.9, intron 1 of 22) protein_coding-intron (ENSMUSG00000001995.9, intron 1 of 21) 17467 ENSMUSG00000001995.9 ENSMUSG00000001995 ENSMUST00000212604 Sipa1l2 protein_coding Interval_6554 chr1 116351772 116351984 + 0 NA intron (ENSMUSG00000070695.4, intron 13 of 23) protein_coding-intron (ENSMUSG00000070695.4, intron 13 of 23) 42535 ENSMUSG00000092948.1 ENSMUSG00000092948 ENSMUST00000175207 Gm23393 miRNA Interval_76711 chr17 83645313 83645547 + 0 NA Intergenic Intergenic -13535 ENSMUSG00000045053.2 ENSMUSG00000045053 ENSMUST00000051482 Kcng3 protein_coding Interval_83821 chr19 4877750 4879172 + 0 NA promoter-TSS (ENSMUSG00000006457.4) protein_coding-promoter-TSS (ENSMUSG00000006457.4) -1306 ENSMUSG00000006463.13 ENSMUSG00000006463 ENSMUST00000162754 Zdhhc24 protein_coding Interval_11242 chr1 180395249 180396204 + 0 NA intron (ENSMUSG00000038855.10, intron 2 of 7) protein_coding-intron (ENSMUSG00000038855.10, intron 2 of 7) 19282 ENSMUSG00000103772.1 ENSMUSG00000103772 ENSMUST00000194945 Gm36933 TEC Interval_126723 chr5 92285620 92286497 + 0 NA TTS (ENSMUSG00000029415.4) protein_coding-TTS (ENSMUSG00000029415.4) -3994 ENSMUSG00000106698.1 ENSMUSG00000106698 ENSMUST00000202680 Gm43599 antisense Interval_32974 chr11 113458484 113459045 + 0 NA intron (ENSMUSG00000041654.15, intron 5 of 5) protein_coding-intron (ENSMUSG00000041654.15, intron 6 of 10) -9213 ENSMUSG00000078251.2 ENSMUSG00000078251 ENSMUST00000105048 Gm16487 pseudogene Interval_82883 chr18 78211816 78212704 + 0 NA intron (ENSMUSG00000024552.16, intron 3 of 21) protein_coding-intron (ENSMUSG00000024552.16, intron 3 of 11) -70141 ENSMUSG00000059336.14 ENSMUSG00000059336 ENSMUST00000160639 Slc14a1 protein_coding Interval_174715 chrX 164027171 164028583 + 0 NA intron (ENSMUSG00000031373.4, intron 1 of 1) protein_coding-intron (ENSMUSG00000031373.4, intron 1 of 7) 104 ENSMUSG00000031373.4 ENSMUSG00000031373 ENSMUST00000126650 Car5b protein_coding Interval_4824 chr1 79807483 79807757 + 0 NA intron (ENSMUSG00000026249.10, intron 4 of 4) protein_coding-intron (ENSMUSG00000026249.10, intron 4 of 8) 12684 ENSMUSG00000026249.10 ENSMUSG00000026249 ENSMUST00000191026 Serpine2 protein_coding Interval_105763 chr3 89208212 89208554 + 0 NA TTS (ENSMUSG00000064068.15) protein_coding-TTS (ENSMUSG00000064068.15) -2042 ENSMUSG00000105692.1 ENSMUSG00000105692 ENSMUST00000199915 Gm43737 TEC Interval_30835 chr11 96780161 96781533 + 0 NA Intergenic Intergenic -3327 ENSMUSG00000020876.14 ENSMUSG00000020876 ENSMUST00000136799 Snx11 protein_coding Interval_97519 chr2 138406305 138406557 + 0 NA intron (ENSMUSG00000062098.11, intron 1 of 3) protein_coding-intron (ENSMUSG00000062098.11, intron 1 of 5) 149769 ENSMUSG00000062098.11 ENSMUSG00000062098 ENSMUST00000075410 Btbd3 protein_coding Interval_30636 chr11 95593575 95593994 + 0 NA Intergenic Intergenic -6049 ENSMUSG00000000120.6 ENSMUSG00000000120 ENSMUST00000000122 Ngfr protein_coding Interval_41712 chr12 118187258 118187459 + 0 NA intron (ENSMUSG00000018581.15, intron 5 of 81) protein_coding-intron (ENSMUSG00000018581.15, intron 5 of 81) 47206 ENSMUSG00000113831.1 ENSMUSG00000113831 ENSMUST00000220671 Gm49602 lincRNA Interval_22681 chr11 12921183 12921489 + 0 NA Intergenic Intergenic 16602 ENSMUSG00000083859.1 ENSMUSG00000083859 ENSMUST00000118518 Gm12003 processed_pseudogene Interval_128482 chr5 113585685 113586728 + 0 NA intron (ENSMUSG00000063430.9, intron 4 of 4) protein_coding-intron (ENSMUSG00000063430.9, intron 8 of 8) 7418 ENSMUSG00000063430.9 ENSMUSG00000063430 ENSMUST00000198673 Wscd2 protein_coding Interval_110841 chr4 8891970 8892180 + 0 NA Intergenic Intergenic 36844 ENSMUSG00000041235.12 ENSMUSG00000041235 ENSMUST00000222546 Chd7 protein_coding Interval_55913 chr14 102069813 102070071 + 0 NA Intergenic Intergenic -87179 ENSMUSG00000115584.1 ENSMUSG00000115584 ENSMUST00000226515 Gm5854 processed_pseudogene Interval_165089 chr9 44501876 44502299 + 0 NA intron (ENSMUSG00000063382.6, intron 3 of 7) protein_coding-intron (ENSMUSG00000063382.6, intron 4 of 8) -18284 ENSMUSG00000111312.1 ENSMUSG00000111312 ENSMUST00000215551 Gm47205 TEC Interval_137845 chr6 82890858 82892989 + 0 NA Intergenic Intergenic -3214 ENSMUSG00000107401.1 ENSMUSG00000107401 ENSMUST00000204060 Gm6312 processed_pseudogene Interval_7727 chr1 133310239 133312030 + 0 NA intron (ENSMUSG00000103421.1, intron 1 of 3) protein_coding-intron (ENSMUSG00000103421.1, intron 1 of 4) 1244 ENSMUSG00000103421.1 ENSMUSG00000103421 ENSMUST00000192465 Golt1a protein_coding Interval_33705 chr11 118000501 118000727 + 0 NA promoter-TSS (ENSMUSG00000017715.11) protein_coding-promoter-TSS (ENSMUSG00000017715.11) -1656 ENSMUSG00000098958.1 ENSMUSG00000098958 ENSMUST00000184982 Mir6933 miRNA Interval_152464 chr7 133140306 133140771 + 0 NA intron (ENSMUSG00000109816.1, intron 2 of 2) lincRNA-intron (ENSMUSG00000109816.1, intron 2 of 2) 12287 ENSMUSG00000109816.1 ENSMUSG00000109816 ENSMUST00000209850 4930483O08Rik lincRNA Interval_30753 chr11 96278614 96279961 + 0 NA Intergenic Intergenic -3438 ENSMUSG00000056648.5 ENSMUSG00000056648 ENSMUST00000168043 Hoxb8 protein_coding Interval_108891 chr3 133051239 133051651 + 0 NA exon (ENSMUSG00000105259.1, exon 1 of 1) TEC-exon (ENSMUSG00000105259.1, exon 1 of 1) 950 ENSMUSG00000105259.1 ENSMUSG00000105259 ENSMUST00000198888 Gm42874 TEC Interval_47479 chr13 85154381 85155276 + 0 NA Intergenic Intergenic 14108 ENSMUSG00000114954.1 ENSMUSG00000114954 ENSMUST00000224780 Gm47746 processed_pseudogene Interval_53347 chr14 56493963 56495421 + 0 NA intron (ENSMUSG00000000365.9, intron 26 of 36) protein_coding-intron (ENSMUSG00000000365.9, intron 26 of 36) -14591 ENSMUSG00000000365.9 ENSMUSG00000000365 ENSMUST00000225737 Rnf17 protein_coding Interval_28293 chr11 74954967 74956583 + 0 NA intron (ENSMUSG00000038290.15, intron 7 of 16) protein_coding-intron (ENSMUSG00000038290.15, intron 8 of 18) -19624 ENSMUSG00000088719.1 ENSMUSG00000088719 ENSMUST00000158094 Gm22733 snRNA Interval_74223 chr17 47550575 47551391 + 0 NA intron (ENSMUSG00000034165.16, intron 1 of 6) protein_coding-intron (ENSMUSG00000034165.16, intron 1 of 6) -45341 ENSMUSG00000034165.16 ENSMUSG00000034165 ENSMUST00000183206 Ccnd3 protein_coding Interval_49593 chr13 113313959 113314449 + 0 NA intron (ENSMUSG00000021763.17, intron 1 of 9) protein_coding-intron (ENSMUSG00000021763.17, intron 1 of 9) 21045 ENSMUSG00000021763.17 ENSMUSG00000021763 ENSMUST00000135096 BC067074 protein_coding Interval_104335 chr3 63582420 63582705 + 0 NA Intergenic Intergenic 93569 ENSMUSG00000088957.1 ENSMUSG00000088957 ENSMUST00000158332 Gm24946 snRNA Interval_65303 chr16 21373366 21374003 + 0 NA Intergenic Intergenic -40555 ENSMUSG00000116632.1 ENSMUSG00000116632 ENSMUST00000231972 Magef1 transcribed_processed_pseudogene Interval_90811 chr2 32741069 32742775 + 0 NA promoter-TSS (ENSMUSG00000009551.2) protein_coding-promoter-TSS (ENSMUSG00000009551.2) 6641 ENSMUSG00000059013.12 ENSMUSG00000059013 ENSMUST00000139563 Sh2d3c protein_coding Interval_141508 chr6 128763737 128764528 + 0 NA Intergenic Intergenic 19488 ENSMUSG00000107866.1 ENSMUSG00000107866 ENSMUST00000203128 Gm43907 processed_pseudogene Interval_144484 chr7 25395391 25396967 + 0 NA exon (ENSMUSG00000003123.15, exon 1 of 10) protein_coding-exon (ENSMUSG00000003123.15, exon 1 of 10) -6955 ENSMUSG00000003123.15 ENSMUSG00000003123 ENSMUST00000105177 Lipe protein_coding Interval_44992 chr13 51191559 51191858 + 0 NA Intergenic Intergenic -10990 ENSMUSG00000106200.1 ENSMUSG00000106200 ENSMUST00000196168 Gm44341 miRNA Interval_137074 chr6 67170038 67170757 + 0 NA Intergenic Intergenic -35222 ENSMUSG00000047905.10 ENSMUSG00000047905 ENSMUST00000120174 Gm8566 processed_pseudogene Interval_7299 chr1 128585574 128586558 + 0 NA Intergenic Intergenic 6227 ENSMUSG00000045382.6 ENSMUSG00000045382 ENSMUST00000142893 Cxcr4 protein_coding Interval_7540 chr1 132111104 132111465 + 0 NA TTS (ENSMUSG00000026437.11) protein_coding-TTS (ENSMUSG00000026437.11) 4971 ENSMUSG00000026437.11 ENSMUSG00000026437 ENSMUST00000189733 Cdk18 protein_coding Interval_98874 chr2 155702225 155702593 + 0 NA exon (ENSMUSG00000038312.10, exon 11 of 11) protein_coding-exon (ENSMUSG00000038312.10, exon 11 of 11) 10909 ENSMUSG00000038312.10 ENSMUSG00000038312 ENSMUST00000139868 Edem2 protein_coding Interval_67380 chr16 48247309 48247680 + 0 NA Intergenic Intergenic -14320 ENSMUSG00000116756.1 ENSMUSG00000116756 ENSMUST00000232184 Gm49770 processed_pseudogene Interval_35513 chr12 24103984 24104250 + 0 NA Intergenic Intergenic -6871 ENSMUSG00000073158.4 ENSMUSG00000073158 ENSMUST00000101538 9030624G23Rik protein_coding Interval_32355 chr11 107123744 107125164 + 0 NA intron (ENSMUSG00000040481.17, intron 1 of 29) protein_coding-intron (ENSMUSG00000040481.17, intron 1 of 27) -32954 ENSMUSG00000087596.1 ENSMUSG00000087596 ENSMUST00000129501 Gm11715 antisense Interval_103790 chr3 52994396 52994859 + 0 NA promoter-TSS (ENSMUSG00000027742.13) protein_coding-promoter-TSS (ENSMUSG00000027742.13) 22591 ENSMUSG00000027742.13 ENSMUSG00000027742 ENSMUST00000193043 Cog6 protein_coding Interval_98984 chr2 156479588 156481047 + 0 NA intron (ENSMUSG00000027624.20, intron 1 of 21) protein_coding-intron (ENSMUSG00000027624.20, intron 1 of 21) -24666 ENSMUSG00000085524.1 ENSMUSG00000085524 ENSMUST00000147187 Gm14224 antisense Interval_63529 chr15 101789763 101790426 + 0 NA Intergenic Intergenic -11401 ENSMUSG00000056605.7 ENSMUSG00000056605 ENSMUST00000127671 Krt72 protein_coding Interval_172073 chrX 6082611 6083764 + 0 NA exon (ENSMUSG00000073294.4, exon 1 of 2) protein_coding-exon (ENSMUSG00000073294.4, exon 1 of 2) 232 ENSMUSG00000073294.4 ENSMUSG00000073294 ENSMUST00000117544 AU022751 protein_coding Interval_148431 chr7 81203045 81204137 + 0 NA Intergenic Intergenic -1419 ENSMUSG00000109323.1 ENSMUSG00000109323 ENSMUST00000207652 Gm44968 lincRNA Interval_50426 chr14 12931822 12932337 + 0 NA Intergenic Intergenic -60616 ENSMUSG00000114561.1 ENSMUSG00000114561 ENSMUST00000223657 Gm48515 processed_pseudogene Interval_63650 chr15 102542734 102543187 + 0 NA intron (ENSMUSG00000099083.7, intron 9 of 11) protein_coding-intron (ENSMUSG00000099083.7, intron 9 of 10) -18018 ENSMUSG00000023052.8 ENSMUSG00000023052 ENSMUST00000184659 Npff protein_coding Interval_123484 chr5 32833206 32834624 + 0 NA intron (ENSMUSG00000054280.14, intron 4 of 10) protein_coding-intron (ENSMUSG00000054280.14, intron 4 of 10) -4214 ENSMUSG00000106654.1 ENSMUSG00000106654 ENSMUST00000199229 Gm2623 processed_pseudogene Interval_16591 chr10 64675785 64676101 + 0 NA intron (ENSMUSG00000060843.11, intron 13 of 17) protein_coding-intron (ENSMUSG00000060843.11, intron 12 of 16) -371199 ENSMUSG00000089003.1 ENSMUSG00000089003 ENSMUST00000158378 Gm23854 snRNA Interval_150218 chr7 108269219 108269450 + 0 NA promoter-TSS (ENSMUSG00000109174.1) processed_pseudogene-promoter-TSS (ENSMUSG00000109174.1) -195 ENSMUSG00000109174.1 ENSMUSG00000109174 ENSMUST00000208170 Gm6007 processed_pseudogene Interval_23144 chr11 20163287 20163501 + 0 NA Intergenic Intergenic -17050 ENSMUSG00000085035.1 ENSMUSG00000085035 ENSMUST00000156150 Gm12031 lincRNA Interval_23560 chr11 23366299 23366523 + 0 NA intron (ENSMUSG00000056342.16, intron 15 of 79) protein_coding-intron (ENSMUSG00000056342.16, intron 15 of 79) 59516 ENSMUSG00000056342.16 ENSMUSG00000056342 ENSMUST00000125701 Usp34 protein_coding Interval_18147 chr10 83019282 83020646 + 0 NA intron (ENSMUSG00000034612.7, intron 1 of 2) protein_coding-intron (ENSMUSG00000034612.7, intron 1 of 2) 11731 ENSMUSG00000112084.1 ENSMUSG00000112084 ENSMUST00000218071 Gm10773 TEC Interval_1352 chr1 20908082 20909030 + 0 NA intron (ENSMUSG00000025931.15, intron 1 of 2) protein_coding-intron (ENSMUSG00000025931.15, intron 1 of 2) 6984 ENSMUSG00000077314.1 ENSMUSG00000077314 ENSMUST00000104126 Gm24171 snoRNA Interval_54384 chr14 68134106 68135365 + 0 NA Intergenic Intergenic -9889 ENSMUSG00000022054.11 ENSMUSG00000022054 ENSMUST00000022638 Nefm protein_coding Interval_115117 chr4 90977609 90978072 + 0 NA Intergenic Intergenic 20153 ENSMUSG00000096896.1 ENSMUSG00000096896 ENSMUST00000178089 Gm25244 snoRNA Interval_107793 chr3 115168809 115169151 + 0 NA Intergenic Intergenic 3069 ENSMUSG00000106510.1 ENSMUSG00000106510 ENSMUST00000198707 Gm18429 processed_pseudogene Interval_72559 chr17 30664284 30665310 + 0 NA intron (ENSMUSG00000033826.10, intron 1 of 7) protein_coding-intron (ENSMUSG00000033826.10, intron 13 of 92) -5843 ENSMUSG00000033826.10 ENSMUSG00000033826 ENSMUST00000235567 Dnah8 protein_coding Interval_26611 chr11 59218847 59219691 + 0 NA intron (ENSMUSG00000048076.14, intron 1 of 4) protein_coding-intron (ENSMUSG00000048076.14, intron 1 of 4) 8893 ENSMUSG00000048076.14 ENSMUSG00000048076 ENSMUST00000061242 Arf1 protein_coding Interval_99731 chr2 164542467 164542844 + 0 NA Intergenic Intergenic -7875 ENSMUSG00000086179.1 ENSMUSG00000086179 ENSMUST00000151754 Gm14317 lincRNA Interval_146789 chr7 51434649 51435515 + 0 NA Intergenic Intergenic -22978 ENSMUSG00000109059.1 ENSMUSG00000109059 ENSMUST00000209075 Gm9354 processed_pseudogene Interval_79512 chr18 32575288 32576006 + 0 NA Intergenic Intergenic -15613 ENSMUSG00000090523.2 ENSMUSG00000090523 ENSMUST00000172434 Gypc protein_coding Interval_155030 chr8 25819151 25819934 + 0 NA intron (ENSMUSG00000031575.18, intron 12 of 14) protein_coding-intron (ENSMUSG00000031575.18, intron 13 of 15) 12987 ENSMUSG00000031574.8 ENSMUSG00000031574 ENSMUST00000033979 Star protein_coding Interval_91743 chr2 49022443 49022630 + 0 NA intron (ENSMUSG00000036792.12, intron 2 of 3) protein_coding-intron (ENSMUSG00000036792.12, intron 2 of 10) -112523 ENSMUSG00000026761.12 ENSMUSG00000026761 ENSMUST00000123271 Orc4 protein_coding Interval_34279 chr11 121941244 121943269 + 0 NA Intergenic Intergenic 28429 ENSMUSG00000082831.1 ENSMUSG00000082831 ENSMUST00000122407 Gm12591 unprocessed_pseudogene Interval_170132 chr9 105309691 105310010 + 0 NA intron (ENSMUSG00000035032.12, intron 5 of 11) protein_coding-intron (ENSMUSG00000035032.12, intron 6 of 15) -23663 ENSMUSG00000085430.2 ENSMUSG00000085430 ENSMUST00000128415 Gm15619 antisense Interval_102270 chr3 20171095 20171632 + 0 NA Intergenic Intergenic -16294 ENSMUSG00000019528.18 ENSMUSG00000019528 ENSMUST00000135475 Gyg protein_coding Interval_160256 chr8 107503164 107503911 + 0 NA intron (ENSMUSG00000031930.11, intron 1 of 3) protein_coding-intron (ENSMUSG00000031930.11, intron 6 of 23) -47707 ENSMUSG00000065439.1 ENSMUSG00000065439 ENSMUST00000083505 Mir140 miRNA Interval_107229 chr3 104769977 104770490 + 0 NA exon (ENSMUSG00000055865.8, exon 7 of 7) protein_coding-exon (ENSMUSG00000055865.8, exon 7 of 7) 3037 ENSMUSG00000105195.1 ENSMUSG00000105195 ENSMUST00000199762 Gm43584 processed_transcript Interval_86808 chr19 43994267 43994784 + 0 NA Intergenic Intergenic -25832 ENSMUSG00000025196.4 ENSMUSG00000025196 ENSMUST00000131882 Cpn1 protein_coding Interval_94055 chr2 82943642 82943832 + 0 NA exon (ENSMUSG00000075249.12, exon 1 of 23) protein_coding-exon (ENSMUSG00000075249.12, exon 1 of 23) 103 ENSMUSG00000075249.12 ENSMUSG00000075249 ENSMUST00000132967 Fsip2 protein_coding Interval_141536 chr6 128974758 128975146 + 0 NA promoter-TSS (ENSMUSG00000085786.1) antisense-promoter-TSS (ENSMUSG00000085786.1) -57 ENSMUSG00000098359.1 ENSMUSG00000098359 ENSMUST00000184433 Mir7649 miRNA Interval_103322 chr3 38719629 38719814 + 0 NA Intergenic Intergenic 105474 ENSMUSG00000106168.1 ENSMUSG00000106168 ENSMUST00000200416 Gm43538 lincRNA Interval_76323 chr17 79059338 79060618 + 0 NA intron (ENSMUSG00000024084.8, intron 1 of 5) protein_coding-intron (ENSMUSG00000024084.8, intron 1 of 6) 7790 ENSMUSG00000024084.8 ENSMUSG00000024084 ENSMUST00000233899 Qpct protein_coding Interval_155255 chr8 28975664 28975906 + 0 NA intron (ENSMUSG00000063626.6, intron 1 of 14) protein_coding-intron (ENSMUSG00000063626.6, intron 1 of 17) 111701 ENSMUSG00000109874.1 ENSMUSG00000109874 ENSMUST00000211467 Gm9911 TEC Interval_78952 chr18 22639922 22640639 + 0 NA Intergenic Intergenic 296034 ENSMUSG00000045215.17 ENSMUSG00000045215 ENSMUST00000097655 Asxl3 protein_coding Interval_38163 chr12 76080443 76082119 + 0 NA promoter-TSS (ENSMUSG00000063450.14) protein_coding-promoter-TSS (ENSMUSG00000063450.14) 71346 ENSMUSG00000046580.10 ENSMUSG00000046580 ENSMUST00000121461 Gm7862 processed_pseudogene Interval_120983 chr4 152056852 152057389 + 0 NA TTS (ENSMUSG00000028948.16) protein_coding-TTS (ENSMUSG00000028948.16) 17799 ENSMUSG00000028948.16 ENSMUSG00000028948 ENSMUST00000131696 Nol9 protein_coding Interval_28408 chr11 75700444 75700748 + 0 NA exon (ENSMUSG00000017776.15, exon 3 of 3) protein_coding-exon (ENSMUSG00000017776.15, exon 3 of 3) 21054 ENSMUSG00000017776.15 ENSMUSG00000017776 ENSMUST00000147718 Crk protein_coding Interval_174411 chrX 151802783 151804671 + 0 NA promoter-TSS (ENSMUSG00000025261.18) protein_coding-promoter-TSS (ENSMUSG00000025261.18) 20205 ENSMUSG00000083719.1 ENSMUSG00000083719 ENSMUST00000117340 Gm15161 processed_pseudogene Interval_40428 chr12 104823643 104823986 + 0 NA intron (ENSMUSG00000021097.15, intron 1 of 14) protein_coding-intron (ENSMUSG00000021097.15, intron 1 of 12) -33557 ENSMUSG00000021101.2 ENSMUSG00000021101 ENSMUST00000021520 4930408O17Rik lincRNA Interval_154506 chr8 18756870 18758060 + 0 NA intron (ENSMUSG00000039842.15, intron 12 of 13) protein_coding-intron (ENSMUSG00000039842.15, intron 12 of 13) -57918 ENSMUSG00000031465.6 ENSMUSG00000031465 ENSMUST00000170200 Angpt2 protein_coding Interval_17863 chr10 80471876 80472568 + 0 NA Intergenic Intergenic -4130 ENSMUSG00000089228.1 ENSMUSG00000089228 ENSMUST00000158603 Gm25044 snRNA Interval_120308 chr4 145343482 145344618 + 0 NA Intergenic Intergenic -28886 ENSMUSG00000028602.12 ENSMUSG00000028602 ENSMUST00000123027 Tnfrsf8 protein_coding Interval_120288 chr4 145206674 145209915 + 0 NA Intergenic Intergenic 38576 ENSMUSG00000028599.10 ENSMUSG00000028599 ENSMUST00000143055 Tnfrsf1b protein_coding Interval_135119 chr6 35721600 35721811 + 0 NA Intergenic Intergenic -106036 ENSMUSG00000107110.1 ENSMUSG00000107110 ENSMUST00000201009 Gm42931 lincRNA Interval_119164 chr4 135938574 135939794 + 0 NA exon (ENSMUSG00000028673.10, exon 8 of 8) protein_coding-exon (ENSMUSG00000028673.10, exon 8 of 8) -9346 ENSMUSG00000028672.13 ENSMUSG00000028672 ENSMUST00000135644 Hmgcl protein_coding Interval_126484 chr5 88896727 88896968 + 0 NA intron (ENSMUSG00000060961.16, intron 1 of 25) protein_coding-intron (ENSMUSG00000060961.16, intron 1 of 24) 10361 ENSMUSG00000060961.16 ENSMUSG00000060961 ENSMUST00000134303 Slc4a4 protein_coding Interval_41666 chr12 117585975 117586460 + 0 NA intron (ENSMUSG00000041992.9, intron 5 of 8) protein_coding-intron (ENSMUSG00000041992.9, intron 7 of 27) 11875 ENSMUSG00000089482.1 ENSMUSG00000089482 ENSMUST00000158857 Gm24741 rRNA Interval_107989 chr3 119059845 119060043 + 0 NA intron (ENSMUSG00000033308.16, intron 13 of 22) protein_coding-intron (ENSMUSG00000033308.16, intron 13 of 22) 191700 ENSMUSG00000106542.1 ENSMUSG00000106542 ENSMUST00000197510 Gm43410 TEC Interval_85694 chr19 29697231 29698059 + 0 NA promoter-TSS (ENSMUSG00000024806.4) protein_coding-promoter-TSS (ENSMUSG00000024806.4) -289 ENSMUSG00000024806.4 ENSMUSG00000024806 ENSMUST00000235954 Mlana protein_coding Interval_48703 chr13 101719190 101720403 + 0 NA intron (ENSMUSG00000041417.15, intron 2 of 15) protein_coding-intron (ENSMUSG00000041417.15, intron 2 of 15) -27453 ENSMUSG00000041417.15 ENSMUSG00000041417 ENSMUST00000189426 Pik3r1 protein_coding Interval_80721 chr18 46584703 46585767 + 0 NA TTS (ENSMUSG00000033184.14) protein_coding-TTS (ENSMUSG00000033184.14) -10702 ENSMUSG00000056130.10 ENSMUSG00000056130 ENSMUST00000149929 Ticam2 protein_coding Interval_160797 chr8 112400898 112401581 + 0 NA Intergenic Intergenic -164273 ENSMUSG00000110435.1 ENSMUSG00000110435 ENSMUST00000212314 Gm3635 processed_pseudogene Interval_79524 chr18 32816346 32817046 + 0 NA promoter-TSS (ENSMUSG00000024379.4) protein_coding-promoter-TSS (ENSMUSG00000024379.4) -164 ENSMUSG00000024379.4 ENSMUSG00000024379 ENSMUST00000234876 Tslp protein_coding Interval_36409 chr12 43951721 43952024 + 0 NA Intergenic Intergenic 9225 ENSMUSG00000111960.1 ENSMUSG00000111960 ENSMUST00000219678 Gm46349 lincRNA Interval_36403 chr12 43748300 43749433 + 0 NA Intergenic Intergenic -1908 ENSMUSG00000112844.1 ENSMUSG00000112844 ENSMUST00000217755 Gm47036 processed_pseudogene Interval_103519 chr3 46485959 46486565 + 0 NA Intergenic Intergenic -38342 ENSMUSG00000090919.6 ENSMUSG00000090919 ENSMUST00000195537 Pabpc4l protein_coding Interval_23056 chr11 19475025 19475714 + 0 NA Intergenic Intergenic 91684 ENSMUSG00000082737.3 ENSMUSG00000082737 ENSMUST00000120961 Gm12026 processed_pseudogene Interval_31191 chr11 98792107 98792639 + 0 NA Intergenic Intergenic -11898 ENSMUSG00000052915.14 ENSMUSG00000052915 ENSMUST00000141016 Msl1 protein_coding Interval_80181 chr18 38067733 38068588 + 0 NA Intergenic Intergenic 44631 ENSMUSG00000118056.1 ENSMUSG00000118056 ENSMUST00000236681 Gm30093 lincRNA Interval_7209 chr1 127810931 127811420 + 0 NA Intergenic Intergenic 14604 ENSMUSG00000026349.14 ENSMUSG00000026349 ENSMUST00000153359 Ccnt2 protein_coding Interval_54121 chr14 65498005 65498350 + 0 NA Intergenic Intergenic -73017 ENSMUSG00000045731.6 ENSMUSG00000045731 ENSMUST00000224594 Pnoc protein_coding Interval_87695 chr19 55122408 55123681 + 0 NA intron (ENSMUSG00000024978.11, intron 1 of 22) protein_coding-intron (ENSMUSG00000024978.11, intron 1 of 21) 4159 ENSMUSG00000024978.11 ENSMUSG00000024978 ENSMUST00000236422 Gpam protein_coding Interval_102887 chr3 32533221 32533437 + 0 NA intron (ENSMUSG00000027668.13, intron 2 of 6) protein_coding-intron (ENSMUSG00000027668.13, intron 2 of 17) -20985 ENSMUSG00000104231.1 ENSMUSG00000104231 ENSMUST00000192741 Gm37592 antisense Interval_20750 chr10 120726123 120726652 + 0 NA Intergenic Intergenic -5428 ENSMUSG00000103017.1 ENSMUSG00000103017 ENSMUST00000195670 Gm37505 TEC Interval_66389 chr16 33545546 33546367 + 0 NA intron (ENSMUSG00000035506.16, intron 3 of 10) protein_coding-intron (ENSMUSG00000035506.16, intron 3 of 12) -70434 ENSMUSG00000035506.16 ENSMUSG00000035506 ENSMUST00000149291 Slc12a8 protein_coding Interval_78841 chr18 20931068 20931538 + 0 NA Intergenic Intergenic -30169 ENSMUSG00000033107.6 ENSMUSG00000033107 ENSMUST00000234316 Rnf125 protein_coding Interval_61423 chr15 81535823 81536500 + 0 NA Intergenic Intergenic -36616 ENSMUSG00000091198.2 ENSMUSG00000091198 ENSMUST00000172270 Gm5218 processed_pseudogene Interval_25684 chr11 50757411 50758320 + 0 NA intron (ENSMUSG00000036545.9, intron 5 of 20) protein_coding-intron (ENSMUSG00000036545.9, intron 5 of 21) -32321 ENSMUSG00000085902.1 ENSMUSG00000085902 ENSMUST00000144876 Gm12200 antisense Interval_115553 chr4 100741403 100741646 + 0 NA Intergenic Intergenic 160246 ENSMUSG00000082601.1 ENSMUSG00000082601 ENSMUST00000118145 Gm12700 processed_pseudogene Interval_83856 chr19 5117272 5118791 + 0 NA promoter-TSS (ENSMUSG00000024862.16) protein_coding-promoter-TSS (ENSMUSG00000024862.16) -7 ENSMUSG00000117710.1 ENSMUSG00000117710 ENSMUST00000236968 Gm10817 antisense Interval_171129 chr9 114671543 114673870 + 0 NA Intergenic Intergenic -16084 ENSMUSG00000032435.9 ENSMUSG00000032435 ENSMUST00000047404 Dync1li1 protein_coding Interval_131871 chr5 140505085 140506174 + 0 NA promoter-TSS (ENSMUSG00000036599.10) protein_coding-promoter-TSS (ENSMUSG00000036599.10) 54 ENSMUSG00000036599.10 ENSMUSG00000036599 ENSMUST00000124142 Chst12 protein_coding Interval_174100 chrX 134746370 134746902 + 0 NA exon (ENSMUSG00000102207.1, exon 1 of 1) TEC-exon (ENSMUSG00000102207.1, exon 1 of 1) 277 ENSMUSG00000102207.1 ENSMUSG00000102207 ENSMUST00000193498 Gm10344 TEC Interval_15135 chr10 42830608 42831302 + 0 NA TTS (ENSMUSG00000019802.13) protein_coding-TTS (ENSMUSG00000019802.13) -10188 ENSMUSG00000087719.1 ENSMUSG00000087719 ENSMUST00000157094 Gm26464 ribozyme Interval_55700 chr14 99121731 99122641 + 0 NA intron (ENSMUSG00000022064.10, intron 5 of 13) protein_coding-intron (ENSMUSG00000022064.10, intron 5 of 17) 10509 ENSMUSG00000115071.1 ENSMUSG00000115071 ENSMUST00000226897 Gm49026 TEC Interval_124818 chr5 55236175 55236636 + 0 NA Intergenic Intergenic 67176 ENSMUSG00000065795.1 ENSMUSG00000065795 ENSMUST00000083861 Gm25513 snRNA Interval_114190 chr4 66637278 66638978 + 0 NA Intergenic Intergenic 87416 ENSMUSG00000082053.1 ENSMUSG00000082053 ENSMUST00000118844 Gm11220 processed_pseudogene Interval_163080 chr9 15064280 15064670 + 0 NA intron (ENSMUSG00000031936.9, intron 14 of 19) protein_coding-intron (ENSMUSG00000031936.9, intron 14 of 19) -20678 ENSMUSG00000031934.14 ENSMUSG00000031934 ENSMUST00000169288 Panx1 protein_coding Interval_51611 chr14 30697641 30698119 + 0 NA Intergenic Intergenic -18611 ENSMUSG00000006527.16 ENSMUSG00000006527 ENSMUST00000227445 Sfmbt1 protein_coding Interval_155904 chr8 40921817 40922121 + 0 NA exon (ENSMUSG00000031596.15, exon 12 of 12) protein_coding-exon (ENSMUSG00000031596.15, exon 12 of 12) -4243 ENSMUSG00000031595.9 ENSMUSG00000031595 ENSMUST00000034004 Pdgfrl protein_coding Interval_57428 chr15 10711212 10711478 + 0 NA intron (ENSMUSG00000022246.14, intron 1 of 1) protein_coding-intron (ENSMUSG00000022246.14, intron 1 of 17) 2753 ENSMUSG00000022246.14 ENSMUSG00000022246 ENSMUST00000227366 Rai14 protein_coding Interval_70334 chr17 8592624 8593180 + 0 NA intron (ENSMUSG00000023868.17, intron 1 of 3) protein_coding-intron (ENSMUSG00000023868.17, intron 1 of 21) -24042 ENSMUSG00000084390.1 ENSMUSG00000084390 ENSMUST00000119013 Gm15425 processed_pseudogene Interval_109616 chr3 145252966 145253134 + 0 NA Intergenic Intergenic 104032 ENSMUSG00000028256.16 ENSMUSG00000028256 ENSMUST00000200353 Odf2l protein_coding Interval_57377 chr15 10363827 10364021 + 0 NA intron (ENSMUSG00000089678.8, intron 1 of 13) protein_coding-intron (ENSMUSG00000089678.8, intron 1 of 13) 5387 ENSMUSG00000089678.8 ENSMUSG00000089678 ENSMUST00000022858 Agxt2 protein_coding Interval_18483 chr10 86555818 86556263 + 0 NA exon (ENSMUSG00000112115.1, exon 1 of 1) processed_pseudogene-exon (ENSMUSG00000112115.1, exon 1 of 1) 142 ENSMUSG00000112115.1 ENSMUSG00000112115 ENSMUST00000219300 Gm21027 processed_pseudogene Interval_58274 chr15 31561473 31562965 + 0 NA Intergenic Intergenic -3170 ENSMUSG00000022235.15 ENSMUSG00000022235 ENSMUST00000161088 Cmbl protein_coding Interval_162087 chr8 124999431 124999784 + 0 NA Intergenic Intergenic -13442 ENSMUSG00000056820.7 ENSMUSG00000056820 ENSMUST00000212603 Tsnax protein_coding Interval_70391 chr17 9690593 9691877 + 0 NA Intergenic Intergenic -21518 ENSMUSG00000046173.3 ENSMUSG00000046173 ENSMUST00000057190 Pabpc6 protein_coding Interval_77850 chr18 4557640 4557949 + 0 NA Intergenic Intergenic -32969 ENSMUSG00000117521.1 ENSMUSG00000117521 ENSMUST00000234706 Gm50024 lincRNA Interval_13003 chr10 9101777 9102012 + 0 NA Intergenic Intergenic -30419 ENSMUSG00000111077.1 ENSMUSG00000111077 ENSMUST00000216441 Gm48743 TEC Interval_37560 chr12 69879213 69879741 + 0 NA intron (ENSMUSG00000034761.15, intron 1 of 7) protein_coding-intron (ENSMUSG00000034761.15, intron 1 of 30) 13626 ENSMUSG00000034761.15 ENSMUSG00000034761 ENSMUST00000147451 Map4k5 protein_coding Interval_150817 chr7 114947709 114950086 + 0 NA promoter-TSS (ENSMUSG00000108419.1) lincRNA-promoter-TSS (ENSMUSG00000108419.1) -400 ENSMUSG00000108419.1 ENSMUSG00000108419 ENSMUST00000205356 Gm45020 lincRNA Interval_110086 chr3 153173540 153174015 + 0 NA intron (ENSMUSG00000105337.4, intron 2 of 3) lincRNA-intron (ENSMUSG00000105337.4, intron 1 of 2) 9038 ENSMUSG00000105337.4 ENSMUSG00000105337 ENSMUST00000197695 1700094M23Rik lincRNA Interval_87802 chr19 55958365 55958626 + 0 NA Intergenic Intergenic -54034 ENSMUSG00000117833.1 ENSMUSG00000117833 ENSMUST00000236015 Gm50135 processed_pseudogene Interval_115450 chr4 99044365 99045117 + 0 NA exon (ENSMUSG00000028553.12, exon 5 of 5) protein_coding-exon (ENSMUSG00000028553.12, exon 5 of 5) 11562 ENSMUSG00000028553.12 ENSMUSG00000028553 ENSMUST00000125546 Angptl3 protein_coding Interval_19284 chr10 96095969 96096488 + 0 NA promoter-TSS (ENSMUSG00000117008.1) unitary_pseudogene-promoter-TSS (ENSMUSG00000117008.1) -223 ENSMUSG00000117008.1 ENSMUSG00000117008 ENSMUST00000233655 Gm49817 unitary_pseudogene Interval_8989 chr1 152942759 152943544 + 0 NA Intergenic Intergenic 6547 ENSMUSG00000103840.1 ENSMUSG00000103840 ENSMUST00000195145 1700040K01Rik TEC Interval_121926 chr5 9797772 9797944 + 0 NA Intergenic Intergenic 18453 ENSMUSG00000105348.1 ENSMUSG00000105348 ENSMUST00000196672 Gm35212 processed_pseudogene Interval_148382 chr7 80904795 80905348 + 0 NA promoter-TSS (ENSMUSG00000025723.12) protein_coding-promoter-TSS (ENSMUSG00000025723.12) -697 ENSMUSG00000025723.12 ENSMUSG00000025723 ENSMUST00000119428 Nmb protein_coding Interval_39750 chr12 96723363 96723615 + 0 NA Intergenic Intergenic 61175 ENSMUSG00000112040.1 ENSMUSG00000112040 ENSMUST00000218365 Gm47396 lincRNA Interval_164937 chr9 43249225 43249688 + 0 NA intron (ENSMUSG00000095385.3, intron 1 of 7) lincRNA-intron (ENSMUSG00000095385.3, intron 1 of 7) -15823 ENSMUSG00000095385.3 ENSMUSG00000095385 ENSMUST00000210037 D630033O11Rik lincRNA Interval_44529 chr13 45748872 45750590 + 0 NA intron (ENSMUSG00000114131.1, intron 1 of 3) protein_coding-intron (ENSMUSG00000046876.16, intron 4 of 7) 159 ENSMUSG00000114131.1 ENSMUSG00000114131 ENSMUST00000221126 Gm47460 antisense Interval_128503 chr5 113687448 113687906 + 0 NA Intergenic Intergenic 37095 ENSMUSG00000042184.11 ENSMUSG00000042184 ENSMUST00000047891 1700069L16Rik protein_coding Interval_94348 chr2 90437407 90438286 + 0 NA intron (ENSMUSG00000025314.16, intron 23 of 23) protein_coding-intron (ENSMUSG00000025314.16, intron 21 of 21) 39163 ENSMUSG00000082980.5 ENSMUSG00000082980 ENSMUST00000120681 Olfr1274 protein_coding Interval_173472 chrX 94317698 94318195 + 0 NA exon (ENSMUSG00000082759.1, exon 1 of 1) processed_pseudogene-exon (ENSMUSG00000082759.1, exon 1 of 1) 514 ENSMUSG00000082759.1 ENSMUSG00000082759 ENSMUST00000121284 Gm14826 processed_pseudogene Interval_47340 chr13 81680468 81680718 + 0 NA intron (ENSMUSG00000035834.11, intron 2 of 3) protein_coding-intron (ENSMUSG00000035834.11, intron 6 of 7) 6692 ENSMUSG00000035834.11 ENSMUSG00000035834 ENSMUST00000160331 Polr3g protein_coding Interval_117754 chr4 126028606 126029790 + 0 NA intron (ENSMUSG00000028859.14, intron 3 of 16) protein_coding-intron (ENSMUSG00000028859.14, intron 1 of 14) 4472 ENSMUSG00000028859.14 ENSMUSG00000028859 ENSMUST00000140426 Csf3r protein_coding Interval_110965 chr4 10927066 10927366 + 0 NA Intergenic Intergenic -19392 ENSMUSG00000081715.1 ENSMUSG00000081715 ENSMUST00000117608 Rps11-ps3 processed_pseudogene Interval_162537 chr9 4009494 4010262 + 0 NA Intergenic Intergenic -204044 ENSMUSG00000110691.1 ENSMUSG00000110691 ENSMUST00000211927 Gm5363 processed_pseudogene Interval_157610 chr8 71692616 71694392 + 0 NA exon (ENSMUSG00000031803.8, exon 2 of 3) protein_coding-exon (ENSMUSG00000031803.8, exon 2 of 3) -2104 ENSMUSG00000110438.1 ENSMUSG00000110438 ENSMUST00000212491 Gm45756 processed_pseudogene Interval_49652 chr13 113810084 113810748 + 0 NA intron (ENSMUSG00000042348.10, intron 1 of 3) protein_coding-intron (ENSMUSG00000042348.10, intron 1 of 4) 15823 ENSMUSG00000042348.10 ENSMUSG00000042348 ENSMUST00000224068 Arl15 protein_coding Interval_89181 chr2 17883496 17884276 + 0 NA Intergenic Intergenic -85902 ENSMUSG00000081851.1 ENSMUSG00000081851 ENSMUST00000120245 Gm13323 processed_pseudogene Interval_107372 chr3 106962499 106962911 + 0 NA intron (ENSMUSG00000098108.7, intron 2 of 5) antisense-intron (ENSMUSG00000098108.7, intron 2 of 5) -73464 ENSMUSG00000047959.4 ENSMUSG00000047959 ENSMUST00000052718 Kcna3 protein_coding Interval_51091 chr14 22505764 22506031 + 0 NA intron (ENSMUSG00000063458.13, intron 2 of 3) protein_coding-intron (ENSMUSG00000063458.13, intron 2 of 6) 36926 ENSMUSG00000114412.1 ENSMUSG00000114412 ENSMUST00000225587 4930405A10Rik antisense Interval_106467 chr3 96545481 96545940 + 0 NA Intergenic Intergenic -13801 ENSMUSG00000038393.14 ENSMUSG00000038393 ENSMUST00000128221 Txnip protein_coding Interval_90459 chr2 30600115 30600513 + 0 NA intron (ENSMUSG00000047363.4, intron 1 of 1) protein_coding-intron (ENSMUSG00000047363.4, intron 1 of 1) -4903 ENSMUSG00000047363.4 ENSMUSG00000047363 ENSMUST00000129719 Cstad protein_coding Interval_104256 chr3 62205782 62206768 + 0 NA Intergenic Intergenic 83068 ENSMUSG00000103322.1 ENSMUSG00000103322 ENSMUST00000195726 Gm37404 TEC Interval_50728 chr14 18629034 18629483 + 0 NA intron (ENSMUSG00000058317.12, intron 4 of 4) protein_coding-intron (ENSMUSG00000058317.12, intron 3 of 4) -84126 ENSMUSG00000114529.1 ENSMUSG00000114529 ENSMUST00000224515 Gm4939 processed_pseudogene Interval_4882 chr1 81316556 81316747 + 0 NA intron (ENSMUSG00000054976.14, intron 6 of 6) protein_coding-intron (ENSMUSG00000054976.14, intron 6 of 6) 205690 ENSMUSG00000104029.1 ENSMUSG00000104029 ENSMUST00000192484 Gm37210 TEC Interval_121820 chr5 8468912 8469365 + 0 NA Intergenic Intergenic 45714 ENSMUSG00000105740.1 ENSMUSG00000105740 ENSMUST00000200378 Gm42685 TEC Interval_107058 chr3 103207206 103208638 + 0 NA Intergenic Intergenic -8947 ENSMUSG00000054379.7 ENSMUSG00000054379 ENSMUST00000090704 2410024N13Rik pseudogene Interval_114704 chr4 84064259 84065130 + 0 NA Intergenic Intergenic -19815 ENSMUSG00000085217.1 ENSMUSG00000085217 ENSMUST00000125884 6030471H07Rik lincRNA Interval_152153 chr7 130215856 130216439 + 0 NA intron (ENSMUSG00000030849.18, intron 1 of 12) protein_coding-intron (ENSMUSG00000030849.18, intron 3 of 14) 50108 ENSMUSG00000030849.18 ENSMUSG00000030849 ENSMUST00000208844 Fgfr2 protein_coding Interval_103860 chr3 53782818 53782994 + 0 NA Intergenic Intergenic 26175 ENSMUSG00000106270.1 ENSMUSG00000106270 ENSMUST00000195997 C820005J03Rik lincRNA Interval_49065 chr13 107663663 107664656 + 0 NA Intergenic Intergenic -23238 ENSMUSG00000102000.6 ENSMUSG00000102000 ENSMUST00000188490 1700006H21Rik lincRNA Interval_55833 chr14 101281763 101282236 + 0 NA Intergenic Intergenic -1068 ENSMUSG00000089041.1 ENSMUSG00000089041 ENSMUST00000158416 Gm26173 snoRNA Interval_56924 chr14 123531161 123531479 + 0 NA intron (ENSMUSG00000000197.8, intron 7 of 10) protein_coding-intron (ENSMUSG00000000197.8, intron 7 of 43) 95824 ENSMUSG00000000197.8 ENSMUSG00000000197 ENSMUST00000228766 Nalcn protein_coding Interval_154048 chr8 12232826 12234527 + 0 NA Intergenic Intergenic -45143 ENSMUSG00000074473.1 ENSMUSG00000074473 ENSMUST00000098935 A230072I06Rik protein_coding Interval_15161 chr10 42972603 42973110 + 0 NA Intergenic Intergenic -62137 ENSMUSG00000111171.1 ENSMUSG00000111171 ENSMUST00000213469 Gm47815 antisense Interval_48216 chr13 97234912 97235308 + 0 NA Intergenic Intergenic -5995 ENSMUSG00000041773.8 ENSMUSG00000041773 ENSMUST00000041623 Enc1 protein_coding Interval_131077 chr5 134957299 134957979 + 0 NA Intergenic Intergenic -10705 ENSMUSG00000047501.3 ENSMUSG00000047501 ENSMUST00000051401 Cldn4 protein_coding Interval_157300 chr8 69133891 69134410 + 0 NA exon (ENSMUSG00000036306.13, exon 4 of 4) protein_coding-exon (ENSMUSG00000036306.13, exon 4 of 4) -44915 ENSMUSG00000036330.12 ENSMUSG00000036330 ENSMUST00000142710 Slc18a1 protein_coding Interval_8977 chr1 152862687 152863077 + 0 NA intron (ENSMUSG00000042772.15, intron 4 of 22) protein_coding-intron (ENSMUSG00000042772.15, intron 4 of 22) -13962 ENSMUSG00000042772.15 ENSMUSG00000042772 ENSMUST00000188937 Smg7 protein_coding Interval_57327 chr15 8785164 8785649 + 0 NA Intergenic Intergenic -74997 ENSMUSG00000005360.14 ENSMUSG00000005360 ENSMUST00000126747 Slc1a3 protein_coding Interval_120143 chr4 142997840 142998180 + 0 NA intron (ENSMUSG00000110067.2, intron 1 of 1) protein_coding-intron (ENSMUSG00000110067.2, intron 1 of 2) 75756 ENSMUSG00000110067.2 ENSMUSG00000110067 ENSMUST00000238915 6330411D24Rik protein_coding Interval_36260 chr12 40428721 40428954 + 0 NA intron (ENSMUSG00000055917.15, intron 1 of 12) protein_coding-intron (ENSMUSG00000055917.15, intron 1 of 11) -17246 ENSMUSG00000035954.10 ENSMUSG00000035954 ENSMUST00000220850 Dock4 protein_coding Interval_10242 chr1 167457203 167457485 + 0 NA intron (ENSMUSG00000040485.5, intron 1 of 1) protein_coding-intron (ENSMUSG00000040485.5, intron 1 of 1) 9436 ENSMUSG00000040485.5 ENSMUSG00000040485 ENSMUST00000036643 Lrrc52 protein_coding Interval_3289 chr1 55751212 55751536 + 0 NA exon (ENSMUSG00000038349.10, exon 6 of 6) protein_coding-exon (ENSMUSG00000038349.10, exon 6 of 6) 49349 ENSMUSG00000038349.10 ENSMUSG00000038349 ENSMUST00000187059 Plcl1 protein_coding Interval_109939 chr3 152056943 152057201 + 0 NA Intergenic Intergenic 14729 ENSMUSG00000105035.1 ENSMUSG00000105035 ENSMUST00000197505 Gm9682 processed_pseudogene Interval_151829 chr7 126963137 126964510 + 0 NA intron (ENSMUSG00000030683.11, intron 12 of 16) protein_coding-intron (ENSMUSG00000030683.11, intron 12 of 17) -4146 ENSMUSG00000030683.11 ENSMUSG00000030683 ENSMUST00000155138 Sez6l2 protein_coding Interval_107414 chr3 107445455 107445952 + 0 NA intron (ENSMUSG00000027895.10, intron 2 of 3) protein_coding-intron (ENSMUSG00000027895.10, intron 2 of 3) 13849 ENSMUSG00000027895.10 ENSMUSG00000027895 ENSMUST00000238670 Kcnc4 protein_coding Interval_107660 chr3 109560304 109560574 + 0 NA intron (ENSMUSG00000033721.16, intron 15 of 16) protein_coding-intron (ENSMUSG00000033721.16, intron 15 of 26) -87085 ENSMUSG00000033721.16 ENSMUSG00000033721 ENSMUST00000148866 Vav3 protein_coding Interval_8065 chr1 135531405 135531635 + 0 NA intron (ENSMUSG00000009418.16, intron 6 of 30) protein_coding-intron (ENSMUSG00000009418.16, intron 3 of 29) -6182 ENSMUSG00000104524.1 ENSMUSG00000104524 ENSMUST00000192904 Gm37333 TEC Interval_162873 chr9 11016863 11017141 + 0 NA Intergenic Intergenic 2552 ENSMUSG00000111568.1 ENSMUSG00000111568 ENSMUST00000215082 Gm18488 processed_pseudogene Interval_26339 chr11 56579186 56579399 + 0 NA Intergenic Intergenic 96343 ENSMUSG00000088228.1 ENSMUSG00000088228 ENSMUST00000157603 Gm22603 snoRNA Interval_136485 chr6 54869776 54870335 + 0 NA intron (ENSMUSG00000058446.14, intron 3 of 3) protein_coding-intron (ENSMUSG00000058446.14, intron 2 of 4) -32367 ENSMUSG00000107841.1 ENSMUSG00000107841 ENSMUST00000204539 Gm44185 TEC Interval_164454 chr9 37138680 37140673 + 0 NA promoter-TSS (ENSMUSG00000111254.1) TEC-promoter-TSS (ENSMUSG00000111254.1) -52 ENSMUSG00000111254.1 ENSMUSG00000111254 ENSMUST00000216206 Gm48717 TEC Interval_134448 chr6 28817010 28817523 + 0 NA intron (ENSMUSG00000001424.14, intron 16 of 16) protein_coding-intron (ENSMUSG00000001424.14, intron 16 of 23) 13079 ENSMUSG00000049939.6 ENSMUSG00000049939 ENSMUST00000062304 Lrrc4 protein_coding Interval_162364 chr8 127437567 127438245 + 0 NA intron (ENSMUSG00000025812.18, intron 3 of 4) protein_coding-intron (ENSMUSG00000025812.18, intron 19 of 23) -123529 ENSMUSG00000090074.1 ENSMUSG00000090074 ENSMUST00000161478 Gm6921 processed_pseudogene Interval_88348 chr2 4249667 4250154 + 0 NA intron (ENSMUSG00000026657.17, intron 1 of 22) protein_coding-intron (ENSMUSG00000026657.17, intron 1 of 22) 32829 ENSMUSG00000102357.1 ENSMUSG00000102357 ENSMUST00000191718 Gm38348 sense_intronic Interval_61157 chr15 79533750 79536478 + 0 NA exon (ENSMUSG00000055065.7, exon 11 of 11) protein_coding-exon (ENSMUSG00000055065.7, exon 11 of 11) 11441 ENSMUSG00000055065.7 ENSMUSG00000055065 ENSMUST00000229431 Ddx17 protein_coding Interval_9301 chr1 156040181 156041502 + 0 NA promoter-TSS (ENSMUSG00000050565.16) protein_coding-promoter-TSS (ENSMUSG00000050565.16) 5069 ENSMUSG00000050565.16 ENSMUSG00000050565 ENSMUST00000125371 Tor1aip2 protein_coding Interval_137309 chr6 71226625 71227871 + 0 NA intron (ENSMUSG00000055027.17, intron 4 of 8) protein_coding-intron (ENSMUSG00000055027.17, intron 5 of 9) -10374 ENSMUSG00000055027.17 ENSMUSG00000055027 ENSMUST00000173297 Smyd1 protein_coding Interval_125542 chr5 69591578 69592573 + 0 NA intron (ENSMUSG00000029209.15, intron 1 of 6) protein_coding-intron (ENSMUSG00000029209.15, intron 1 of 6) 199 ENSMUSG00000029209.15 ENSMUSG00000029209 ENSMUST00000153536 Gnpda2 protein_coding Interval_163667 chr9 23608286 23608934 + 0 NA Intergenic Intergenic -167882 ENSMUSG00000111041.1 ENSMUSG00000111041 ENSMUST00000215669 Gm3011 processed_pseudogene Interval_102390 chr3 23290467 23291366 + 0 NA Intergenic Intergenic 84401 ENSMUSG00000102214.1 ENSMUSG00000102214 ENSMUST00000191948 Gm37492 processed_pseudogene Interval_51705 chr14 31524446 31524747 + 0 NA intron (ENSMUSG00000057606.14, intron 16 of 16) protein_coding-intron (ENSMUSG00000057606.14, intron 16 of 16) 12662 ENSMUSG00000089241.1 ENSMUSG00000089241 ENSMUST00000158616 Gm24057 misc_RNA Interval_11883 chr1 186721924 186722853 + 0 NA intron (ENSMUSG00000001305.5, intron 3 of 3) protein_coding-intron (ENSMUSG00000001305.5, intron 4 of 4) -9290 ENSMUSG00000102619.1 ENSMUSG00000102619 ENSMUST00000194722 Gm37849 TEC Interval_4033 chr1 66742291 66742568 + 0 NA intron (ENSMUSG00000026004.15, intron 5 of 13) protein_coding-intron (ENSMUSG00000026004.15, intron 6 of 13) 26302 ENSMUSG00000102559.1 ENSMUSG00000102559 ENSMUST00000195411 Gm37570 TEC Interval_167653 chr9 71591762 71592687 + 0 NA promoter-TSS (ENSMUSG00000041361.13) protein_coding-promoter-TSS (ENSMUSG00000041361.13) 7916 ENSMUSG00000111815.1 ENSMUSG00000111815 ENSMUST00000216090 Gm6018 processed_pseudogene Interval_164195 chr9 32387492 32388484 + 0 NA intron (ENSMUSG00000041248.9, intron 1 of 1) protein_coding-intron (ENSMUSG00000041248.9, intron 1 of 1) 2779 ENSMUSG00000041248.9 ENSMUSG00000041248 ENSMUST00000172015 Kcnj1 protein_coding Interval_111615 chr4 24587045 24588329 + 0 NA intron (ENSMUSG00000045751.16, intron 13 of 18) protein_coding-intron (ENSMUSG00000045751.16, intron 17 of 22) 91236 ENSMUSG00000045751.16 ENSMUSG00000045751 ENSMUST00000123984 Mms22l protein_coding Interval_134304 chr6 24717315 24717593 + 0 NA Intergenic Intergenic -15791 ENSMUSG00000029679.7 ENSMUSG00000029679 ENSMUST00000031690 Hyal6 protein_coding Interval_31676 chr11 102201176 102201864 + 0 NA promoter-TSS (ENSMUSG00000008855.17) protein_coding-promoter-TSS (ENSMUSG00000008855.17) 9495 ENSMUSG00000034793.15 ENSMUSG00000034793 ENSMUST00000153178 G6pc3 protein_coding Interval_134357 chr6 26475738 26476529 + 0 NA Intergenic Intergenic -15703 ENSMUSG00000088387.1 ENSMUSG00000088387 ENSMUST00000157762 Gm24691 snRNA Interval_4265 chr1 72248166 72248892 + 0 NA Intergenic Intergenic 4316 ENSMUSG00000093956.1 ENSMUSG00000093956 ENSMUST00000177868 Gm24497 snRNA Interval_155233 chr8 28454973 28455347 + 0 NA Intergenic Intergenic -65516 ENSMUSG00000110322.1 ENSMUSG00000110322 ENSMUST00000211297 Gm8110 lincRNA Interval_68645 chr16 83063179 83063484 + 0 NA Intergenic Intergenic 234949 ENSMUSG00000094030.1 ENSMUSG00000094030 ENSMUST00000177665 Gm21833 protein_coding Interval_82987 chr18 80183465 80186470 + 0 NA Intergenic Intergenic -1272 ENSMUSG00000118061.1 ENSMUSG00000118061 ENSMUST00000236423 Rbfaos lincRNA Interval_169832 chr9 102332826 102333084 + 0 NA intron (ENSMUSG00000032537.15, intron 1 of 4) protein_coding-intron (ENSMUSG00000032537.15, intron 1 of 15) -27980 ENSMUSG00000098521.1 ENSMUSG00000098521 ENSMUST00000184048 Mir7243 miRNA Interval_14597 chr10 36848685 36849133 + 0 NA Intergenic Intergenic -72978 ENSMUSG00000088423.1 ENSMUSG00000088423 ENSMUST00000157798 Gm22554 snoRNA Interval_54128 chr14 65547732 65548781 + 0 NA intron (ENSMUSG00000022031.6, intron 12 of 14) protein_coding-intron (ENSMUSG00000022031.6, intron 12 of 14) 44796 ENSMUSG00000022031.6 ENSMUSG00000022031 ENSMUST00000224743 Elp3 protein_coding Interval_6413 chr1 107463243 107463458 + 0 NA Intergenic Intergenic -23173 ENSMUSG00000089278.1 ENSMUSG00000089278 ENSMUST00000158653 Gm24553 snoRNA Interval_71695 chr17 25486033 25486284 + 0 NA Intergenic Intergenic 11057 ENSMUSG00000050824.12 ENSMUSG00000050824 ENSMUST00000165183 Sstr5 protein_coding Interval_106750 chr3 100422533 100422840 + 0 NA Intergenic Intergenic -3753 ENSMUSG00000086923.1 ENSMUSG00000086923 ENSMUST00000152827 4930406D18Rik processed_transcript Interval_146158 chr7 44417396 44419149 + 0 NA Intergenic Intergenic -24465 ENSMUSG00000047085.14 ENSMUSG00000047085 ENSMUST00000156093 Lrrc4b protein_coding Interval_11850 chr1 186261166 186262229 + 0 NA Intergenic Intergenic 79440 ENSMUSG00000102790.1 ENSMUSG00000102790 ENSMUST00000193401 Gm37272 TEC Interval_60691 chr15 76189896 76190373 + 0 NA exon (ENSMUSG00000022565.15, exon 12 of 32) protein_coding-exon (ENSMUSG00000022565.15, exon 12 of 32) 16187 ENSMUSG00000022565.15 ENSMUSG00000022565 ENSMUST00000165135 Plec protein_coding Interval_127054 chr5 99977671 99979650 + 0 NA promoter-TSS (ENSMUSG00000091623.2) antisense-promoter-TSS (ENSMUSG00000091623.2) 278 ENSMUSG00000000568.15 ENSMUSG00000000568 ENSMUST00000170912 Hnrnpd protein_coding Interval_159270 chr8 92646755 92647613 + 0 NA Intergenic Intergenic -27642 ENSMUSG00000031738.14 ENSMUSG00000031738 ENSMUST00000167261 Irx6 protein_coding Interval_45762 chr13 57839378 57839788 + 0 NA intron (ENSMUSG00000056222.15, intron 2 of 10) protein_coding-intron (ENSMUSG00000056222.15, intron 1 of 9) 68749 ENSMUSG00000056222.15 ENSMUSG00000056222 ENSMUST00000185905 Spock1 protein_coding Interval_163984 chr9 30369610 30369918 + 0 NA Intergenic Intergenic 57212 ENSMUSG00000111109.1 ENSMUSG00000111109 ENSMUST00000217174 Gm30933 bidirectional_promoter_lncRNA Interval_156069 chr8 43351692 43354577 + 0 NA Intergenic Intergenic -24841 ENSMUSG00000084702.1 ENSMUSG00000084702 ENSMUST00000122753 Gm22986 snoRNA Interval_129988 chr5 123546506 123547070 + 0 NA intron (ENSMUSG00000029434.12, intron 8 of 12) protein_coding-intron (ENSMUSG00000029434.12, intron 8 of 12) 12231 ENSMUSG00000029434.12 ENSMUSG00000029434 ENSMUST00000197467 Vps33a protein_coding Interval_78976 chr18 23496742 23498528 + 0 NA exon (ENSMUSG00000024302.16, exon 3 of 25) protein_coding-exon (ENSMUSG00000024302.16, exon 3 of 25) 800 ENSMUSG00000024302.16 ENSMUSG00000024302 ENSMUST00000222726 Dtna protein_coding Interval_53940 chr14 63534971 63535791 + 0 NA intron (ENSMUSG00000035078.6, intron 4 of 9) protein_coding-intron (ENSMUSG00000035078.6, intron 4 of 9) -7222 ENSMUSG00000035078.6 ENSMUSG00000035078 ENSMUST00000058679 Mtmr9 protein_coding Interval_67465 chr16 49043084 49043603 + 0 NA Intergenic Intergenic -14143 ENSMUSG00000092009.1 ENSMUSG00000092009 ENSMUST00000168680 Myh15 protein_coding Interval_146672 chr7 49324632 49326869 + 0 NA intron (ENSMUSG00000052512.17, intron 1 of 6) protein_coding-intron (ENSMUSG00000052512.17, intron 1 of 37) -17724 ENSMUSG00000052512.17 ENSMUSG00000052512 ENSMUST00000183715 Nav2 protein_coding Interval_132608 chr5 146712282 146714470 + 0 NA Intergenic Intergenic 6754 ENSMUSG00000106020.1 ENSMUSG00000106020 ENSMUST00000197707 4930573C15Rik lincRNA Interval_2682 chr1 43299564 43299892 + 0 NA intron (ENSMUSG00000099576.1, intron 2 of 5) lincRNA-intron (ENSMUSG00000099576.1, intron 2 of 5) 3197 ENSMUSG00000099576.1 ENSMUSG00000099576 ENSMUST00000189899 Gm29040 lincRNA Interval_159930 chr8 105253394 105255325 + 0 NA TTS (ENSMUSG00000069920.10) protein_coding-TTS (ENSMUSG00000069920.10) 792 ENSMUSG00000069920.10 ENSMUSG00000069920 ENSMUST00000161745 B3gnt9 protein_coding Interval_106126 chr3 93433171 93433953 + 0 NA promoter-TSS (ENSMUSG00000076037.1) miRNA-promoter-TSS (ENSMUSG00000076037.1) 204 ENSMUSG00000057829.5 ENSMUSG00000057829 ENSMUST00000055957 Gm5278 processed_pseudogene Interval_25018 chr11 43145044 43145223 + 0 NA Intergenic Intergenic -10538 ENSMUSG00000055415.8 ENSMUSG00000055415 ENSMUST00000238415 Atp10b protein_coding Interval_89444 chr2 20704382 20704872 + 0 NA intron (ENSMUSG00000036617.17, intron 5 of 5) protein_coding-intron (ENSMUSG00000036617.17, intron 4 of 18) 8607 ENSMUSG00000086418.1 ENSMUSG00000086418 ENSMUST00000137186 Gm13362 antisense Interval_36956 chr12 55580264 55580618 + 0 NA Intergenic Intergenic 15202 ENSMUSG00000063129.1 ENSMUSG00000063129 ENSMUST00000080123 Aldoart2 protein_coding Interval_1694 chr1 31300938 31301475 + 0 NA Intergenic Intergenic 14261 ENSMUSG00000094215.2 ENSMUSG00000094215 ENSMUST00000178167 Gm6489 processed_pseudogene Interval_108810 chr3 131701613 131702413 + 0 NA Intergenic Intergenic -57792 ENSMUSG00000105331.1 ENSMUSG00000105331 ENSMUST00000197726 Gm29865 lincRNA Interval_67469 chr16 49185536 49185921 + 0 NA intron (ENSMUSG00000092009.1, intron 37 of 40) protein_coding-intron (ENSMUSG00000092009.1, intron 37 of 40) 70044 ENSMUSG00000073976.10 ENSMUSG00000073976 ENSMUST00000098226 1700026J12Rik lincRNA Interval_62427 chr15 92521483 92522211 + 0 NA intron (ENSMUSG00000036218.16, intron 1 of 2) protein_coding-intron (ENSMUSG00000036218.16, intron 3 of 9) 177488 ENSMUSG00000097068.2 ENSMUSG00000097068 ENSMUST00000181901 Gm26760 lincRNA Interval_136412 chr6 54224503 54225639 + 0 NA intron (ENSMUSG00000004633.17, intron 6 of 12) protein_coding-intron (ENSMUSG00000004633.17, intron 6 of 12) 29840 ENSMUSG00000086946.7 ENSMUSG00000086946 ENSMUST00000144094 Gm15527 processed_transcript Interval_34262 chr11 121794774 121795006 + 0 NA Intergenic Intergenic -8217 ENSMUSG00000085126.1 ENSMUSG00000085126 ENSMUST00000153767 Gm12589 lincRNA Interval_162830 chr9 9925321 9925667 + 0 NA intron (ENSMUSG00000039488.15, intron 7 of 18) protein_coding-intron (ENSMUSG00000039488.15, intron 11 of 22) 31063 ENSMUSG00000098408.1 ENSMUSG00000098408 ENSMUST00000183808 Mir6237 miRNA Interval_151048 chr7 118162676 118164276 + 0 NA intron (ENSMUSG00000030655.15, intron 36 of 60) protein_coding-intron (ENSMUSG00000030655.15, intron 38 of 62) 9996 ENSMUSG00000065874.1 ENSMUSG00000065874 ENSMUST00000083940 Gm25683 snoRNA Interval_140945 chr6 122921484 122921807 + 0 NA promoter-TSS (ENSMUSG00000049037.8) protein_coding-promoter-TSS (ENSMUSG00000049037.8) -203 ENSMUSG00000049037.8 ENSMUSG00000049037 ENSMUST00000060484 Clec4a1 protein_coding Interval_139569 chr6 101292750 101293740 + 0 NA intron (ENSMUSG00000035357.17, intron 3 of 3) protein_coding-intron (ENSMUSG00000035357.17, intron 3 of 9) -4735 ENSMUSG00000108076.1 ENSMUSG00000108076 ENSMUST00000203503 9530086O07Rik TEC Interval_110585 chr4 4237198 4237912 + 0 NA Intergenic Intergenic -98736 ENSMUSG00000045573.9 ENSMUSG00000045573 ENSMUST00000133567 Penk protein_coding Interval_109695 chr3 146039265 146039934 + 0 NA TTS (ENSMUSG00000043020.13) protein_coding-TTS (ENSMUSG00000043020.13) 1154 ENSMUSG00000105146.1 ENSMUSG00000105146 ENSMUST00000196412 Gm35409 lincRNA Interval_59349 chr15 51817928 51819167 + 0 NA intron (ENSMUSG00000022312.11, intron 2 of 2) protein_coding-intron (ENSMUSG00000022312.11, intron 2 of 7) 17710 ENSMUSG00000022312.11 ENSMUSG00000022312 ENSMUST00000228583 Eif3h protein_coding Interval_143945 chr7 18377826 18378871 + 0 NA promoter-TSS (ENSMUSG00000109235.1) processed_pseudogene-promoter-TSS (ENSMUSG00000109235.1) -825 ENSMUSG00000109235.1 ENSMUSG00000109235 ENSMUST00000208154 Gm5997 processed_pseudogene Interval_90387 chr2 30123909 30124957 + 0 NA promoter-TSS (ENSMUSG00000039686.14) protein_coding-promoter-TSS (ENSMUSG00000039686.14) 152 ENSMUSG00000039686.14 ENSMUSG00000039686 ENSMUST00000149818 Zer1 protein_coding Interval_126697 chr5 92106346 92107512 + 0 NA Intergenic Intergenic 11354 ENSMUSG00000088949.1 ENSMUSG00000088949 ENSMUST00000158324 Gm24931 rRNA Interval_46003 chr13 59927845 59928272 + 0 NA Intergenic Intergenic 8620 ENSMUSG00000114308.1 ENSMUSG00000114308 ENSMUST00000225115 Gm48390 processed_pseudogene Interval_113808 chr4 58957238 58957545 + 0 NA exon (ENSMUSG00000038630.8, exon 6 of 6) protein_coding-exon (ENSMUSG00000038630.8, exon 6 of 6) 13763 ENSMUSG00000038630.8 ENSMUSG00000038630 ENSMUST00000107554 Zkscan16 protein_coding Interval_172368 chrX 14265458 14265679 + 0 NA Intergenic Intergenic -24171 ENSMUSG00000080733.2 ENSMUSG00000080733 ENSMUST00000120156 Gm14867 processed_pseudogene Interval_24858 chr11 40518214 40518469 + 0 NA Intergenic Intergenic 12743 ENSMUSG00000081097.1 ENSMUSG00000081097 ENSMUST00000119170 Gm12135 processed_pseudogene Interval_108412 chr3 126805680 126805938 + 0 NA promoter-TSS (ENSMUSG00000053819.16) protein_coding-promoter-TSS (ENSMUSG00000053819.16) 59676 ENSMUSG00000105553.1 ENSMUSG00000105553 ENSMUST00000196636 Gm42514 TEC Interval_120648 chr4 149882021 149882870 + 0 NA Intergenic Intergenic -21561 ENSMUSG00000086767.1 ENSMUSG00000086767 ENSMUST00000146532 Gm13070 antisense Interval_37113 chr12 58550340 58552015 + 0 NA Intergenic Intergenic -212729 ENSMUSG00000112487.1 ENSMUSG00000112487 ENSMUST00000219517 Gm18873 processed_pseudogene Interval_70690 chr17 13490518 13491937 + 0 NA intron (ENSMUSG00000117042.1, intron 5 of 5) lincRNA-intron (ENSMUSG00000117063.1, intron 4 of 4) -9727 ENSMUSG00000090211.3 ENSMUSG00000090211 ENSMUST00000160626 Gm16050 lincRNA Interval_82125 chr18 67877259 67877757 + 0 NA intron (ENSMUSG00000024542.9, intron 21 of 25) protein_coding-intron (ENSMUSG00000024542.9, intron 41 of 45) 7181 ENSMUSG00000024542.9 ENSMUSG00000024542 ENSMUST00000225589 Cep192 protein_coding Interval_139126 chr6 95637221 95637843 + 0 NA intron (ENSMUSG00000061838.7, intron 2 of 3) protein_coding-intron (ENSMUSG00000061838.7, intron 2 of 10) 19936 ENSMUSG00000061838.7 ENSMUSG00000061838 ENSMUST00000203109 Suclg2 protein_coding Interval_49587 chr13 113252138 113253114 + 0 NA Intergenic Intergenic -40533 ENSMUSG00000021763.17 ENSMUSG00000021763 ENSMUST00000135096 BC067074 protein_coding Interval_72437 chr17 29801253 29801821 + 0 NA Intergenic Intergenic 17850 ENSMUSG00000117489.1 ENSMUSG00000117489 ENSMUST00000234919 Gm50016 lincRNA Interval_154278 chr8 13979802 13980674 + 0 NA Intergenic Intergenic -5545 ENSMUSG00000050052.12 ENSMUSG00000050052 ENSMUST00000119182 Tdrp protein_coding Interval_96990 chr2 130294753 130296466 + 0 NA promoter-TSS (ENSMUSG00000053552.14) protein_coding-promoter-TSS (ENSMUSG00000053552.14) -330 ENSMUSG00000053552.14 ENSMUSG00000053552 ENSMUST00000110287 Ebf4 protein_coding Interval_56048 chr14 105140281 105140655 + 0 NA intron (ENSMUSG00000022119.15, intron 12 of 20) protein_coding-intron (ENSMUSG00000022119.15, intron 12 of 21) -10131 ENSMUSG00000022119.15 ENSMUSG00000022119 ENSMUST00000163499 Rbm26 protein_coding Interval_71779 chr17 26036420 26036795 + 0 NA exon (ENSMUSG00000037098.18, exon 2 of 14) protein_coding-exon (ENSMUSG00000037098.18, exon 2 of 14) -18147 ENSMUSG00000037098.18 ENSMUSG00000037098 ENSMUST00000126306 Rab11fip3 protein_coding Interval_129150 chr5 117864756 117866031 + 0 NA intron (ENSMUSG00000029361.18, intron 3 of 3) protein_coding-intron (ENSMUSG00000029361.18, intron 1 of 28) -1726 ENSMUSG00000029361.18 ENSMUSG00000029361 ENSMUST00000138554 Nos1 protein_coding Interval_133869 chr6 13838345 13839523 + 0 NA promoter-TSS (ENSMUSG00000048216.13) protein_coding-promoter-TSS (ENSMUSG00000048216.13) 561 ENSMUSG00000048216.13 ENSMUSG00000048216 ENSMUST00000127072 Gpr85 protein_coding Interval_97257 chr2 132689279 132690193 + 0 NA promoter-TSS (ENSMUSG00000044991.10) protein_coding-promoter-TSS (ENSMUSG00000044991.10) -421 ENSMUSG00000044991.10 ENSMUSG00000044991 ENSMUST00000141460 Shld1 protein_coding Interval_41442 chr12 114008803 114009437 + 0 NA Intergenic Intergenic 4486 ENSMUSG00000103271.1 ENSMUSG00000103271 ENSMUST00000192975 Ighv4-2 IG_V_pseudogene Interval_164668 chr9 40454994 40456955 + 0 NA promoter-TSS (ENSMUSG00000040111.17) protein_coding-promoter-TSS (ENSMUSG00000040111.17) -31746 ENSMUSG00000111515.1 ENSMUSG00000111515 ENSMUST00000215697 Gm5055 processed_pseudogene Interval_60899 chr15 77708986 77709192 + 0 NA intron (ENSMUSG00000071716.5, intron 1 of 2) protein_coding-intron (ENSMUSG00000071716.5, intron 1 of 4) 7092 ENSMUSG00000116438.1 ENSMUSG00000116438 ENSMUST00000229341 Gm18911 processed_pseudogene Interval_78233 chr18 10522801 10523332 + 0 NA intron (ENSMUSG00000042942.18, intron 13 of 17) protein_coding-intron (ENSMUSG00000042942.18, intron 16 of 32) 28340 ENSMUSG00000084693.1 ENSMUSG00000084693 ENSMUST00000122744 Gm24894 snoRNA Interval_6659 chr1 118589496 118590072 + 0 NA intron (ENSMUSG00000064302.13, intron 11 of 14) protein_coding-intron (ENSMUSG00000064302.13, intron 36 of 39) -38161 ENSMUSG00000026380.10 ENSMUSG00000026380 ENSMUST00000027629 Tfcp2l1 protein_coding Interval_66679 chr16 36080904 36082387 + 0 NA intron (ENSMUSG00000075229.11, intron 1 of 4) protein_coding-intron (ENSMUSG00000075229.11, intron 1 of 4) -7559 ENSMUSG00000075229.11 ENSMUSG00000075229 ENSMUST00000231239 Ccdc58 protein_coding Interval_145372 chr7 34284950 34285209 + 0 NA TTS (ENSMUSG00000066571.13) protein_coding-TTS (ENSMUSG00000066571.13) 28443 ENSMUSG00000066571.13 ENSMUSG00000066571 ENSMUST00000205618 4931406P16Rik protein_coding Interval_137487 chr6 72723281 72723783 + 0 NA intron (ENSMUSG00000055799.13, intron 2 of 5) protein_coding-intron (ENSMUSG00000055799.13, intron 3 of 11) 24318 ENSMUSG00000079524.2 ENSMUSG00000079524 ENSMUST00000114051 Gm15402 antisense Interval_102096 chr3 17220011 17220590 + 0 NA Intergenic Intergenic 10675 ENSMUSG00000095827.2 ENSMUSG00000095827 ENSMUST00000177874 Gm5283 processed_pseudogene Interval_46422 chr13 65127553 65128436 + 0 NA Intergenic Intergenic 2116 ENSMUSG00000114162.1 ENSMUSG00000114162 ENSMUST00000221000 Gm3785 processed_pseudogene Interval_23154 chr11 20208162 20208457 + 0 NA intron (ENSMUSG00000020149.17, intron 1 of 5) protein_coding-intron (ENSMUSG00000020149.17, intron 1 of 5) 6707 ENSMUSG00000020149.17 ENSMUSG00000020149 ENSMUST00000152728 Rab1a protein_coding Interval_29236 chr11 81956295 81956827 + 0 NA intron (ENSMUSG00000020704.13, intron 1 of 9) protein_coding-intron (ENSMUSG00000020704.13, intron 1 of 9) 11896 ENSMUSG00000020704.13 ENSMUSG00000020704 ENSMUST00000066197 Asic2 protein_coding Interval_16371 chr10 62527157 62527346 + 0 NA intron (ENSMUSG00000020077.14, intron 1 of 3) protein_coding-intron (ENSMUSG00000020077.14, intron 1 of 3) 174 ENSMUSG00000020077.14 ENSMUSG00000020077 ENSMUST00000162956 Srgn protein_coding Interval_35943 chr12 32258314 32258780 + 0 NA Intergenic Intergenic 12217 ENSMUSG00000112578.1 ENSMUSG00000112578 ENSMUST00000218566 Gm33308 lincRNA Interval_114326 chr4 72905699 72906403 + 0 NA TTS (ENSMUSG00000089098.1) snoRNA-TTS (ENSMUSG00000089098.1) 287 ENSMUSG00000089098.1 ENSMUSG00000089098 ENSMUST00000158473 Gm25653 snoRNA Interval_90721 chr2 32103026 32103519 + 0 NA intron (ENSMUSG00000051373.5, intron 1 of 1) protein_coding-intron (ENSMUSG00000051373.5, intron 1 of 1) 7117 ENSMUSG00000051373.5 ENSMUSG00000051373 ENSMUST00000146502 Plpp7 protein_coding Interval_103104 chr3 35344626 35346015 + 0 NA Intergenic Intergenic 19706 ENSMUSG00000093499.1 ENSMUSG00000093499 ENSMUST00000177270 Gm25442 miRNA Interval_36862 chr12 54789174 54790023 + 0 NA intron (ENSMUSG00000005656.9, intron 2 of 5) protein_coding-intron (ENSMUSG00000005656.9, intron 2 of 13) 6089 ENSMUSG00000005656.9 ENSMUSG00000005656 ENSMUST00000219865 Snx6 protein_coding Interval_133566 chr6 6870327 6870513 + 0 NA intron (ENSMUSG00000090063.6, intron 1 of 2) antisense-intron (ENSMUSG00000090063.6, intron 1 of 2) 1213 ENSMUSG00000098326.1 ENSMUSG00000098326 ENSMUST00000184182 Dlx6os1 misc_RNA Interval_21919 chr11 5195858 5197084 + 0 NA intron (ENSMUSG00000020393.16, intron 8 of 8) protein_coding-intron (ENSMUSG00000020393.16, intron 8 of 8) 41977 ENSMUSG00000020393.16 ENSMUSG00000020393 ENSMUST00000151978 Kremen1 protein_coding Interval_91777 chr2 49482736 49482974 + 0 NA intron (ENSMUSG00000069495.12, intron 1 of 13) protein_coding-intron (ENSMUSG00000069495.12, intron 1 of 13) -46020 ENSMUSG00000069495.12 ENSMUSG00000069495 ENSMUST00000152485 Epc2 protein_coding Interval_100933 chr2 173453790 173454108 + 0 NA Intergenic Intergenic 59383 ENSMUSG00000086114.1 ENSMUSG00000086114 ENSMUST00000147357 Gm14642 lincRNA Interval_4892 chr1 81621731 81622530 + 0 NA Intergenic Intergenic -64647 ENSMUSG00000101986.1 ENSMUSG00000101986 ENSMUST00000191337 Gm6198 processed_pseudogene Interval_68843 chr16 87534183 87534690 + 0 NA Intergenic Intergenic -6271 ENSMUSG00000077579.1 ENSMUSG00000077579 ENSMUST00000104391 Gm24891 snoRNA Interval_167563 chr9 70487265 70488473 + 0 NA intron (ENSMUSG00000032217.13, intron 1 of 4) protein_coding-intron (ENSMUSG00000032217.13, intron 2 of 14) 12385 ENSMUSG00000065202.1 ENSMUSG00000065202 ENSMUST00000083268 Gm24615 snoRNA Interval_167416 chr9 68892584 68893043 + 0 NA intron (ENSMUSG00000032238.17, intron 1 of 5) protein_coding-intron (ENSMUSG00000032238.17, intron 1 of 10) 238922 ENSMUSG00000032238.17 ENSMUSG00000032238 ENSMUST00000113624 Rora protein_coding Interval_281 KZ289072.1 230590 230963 + 0 NA NA NA NA NA Interval_21915 chr11 5164092 5165052 + 0 NA Intergenic Intergenic -12332 ENSMUSG00000034164.17 ENSMUSG00000034164 ENSMUST00000138551 Emid1 protein_coding Interval_18841 chr10 91206058 91206251 + 0 NA Intergenic Intergenic 14465 ENSMUSG00000111544.1 ENSMUSG00000111544 ENSMUST00000216451 4930534H03Rik lincRNA Interval_33693 chr11 117941545 117942303 + 0 NA Intergenic Intergenic 20019 ENSMUSG00000082562.1 ENSMUSG00000082562 ENSMUST00000121028 Gm11726 processed_pseudogene Interval_9282 chr1 155807373 155807668 + 0 NA intron (ENSMUSG00000033684.14, intron 1 of 12) protein_coding-intron (ENSMUSG00000033684.14, intron 1 of 11) -10974 ENSMUSG00000102558.1 ENSMUSG00000102558 ENSMUST00000195048 Gm37571 antisense Interval_25434 chr11 48377058 48377401 + 0 NA Intergenic Intergenic -86916 ENSMUSG00000081952.1 ENSMUSG00000081952 ENSMUST00000120545 Gm12178 processed_pseudogene Interval_130482 chr5 128237455 128238218 + 0 NA intron (ENSMUSG00000034310.8, intron 2 of 8) protein_coding-intron (ENSMUSG00000034310.8, intron 2 of 8) 3503 ENSMUSG00000104581.1 ENSMUSG00000104581 ENSMUST00000197363 Gm42497 TEC Interval_80954 chr18 51001589 51001817 + 0 NA Intergenic Intergenic -1401 ENSMUSG00000118088.1 ENSMUSG00000118088 ENSMUST00000236182 Gm3815 processed_pseudogene Interval_50020 chr13 119748631 119749141 + 0 NA intron (ENSMUSG00000095930.1, intron 1 of 3) protein_coding-intron (ENSMUSG00000095930.1, intron 1 of 3) -7207 ENSMUSG00000114369.1 ENSMUSG00000114369 ENSMUST00000224796 Gm41077 antisense Interval_38676 chr12 80967869 80968360 + 0 NA promoter-TSS (ENSMUSG00000021135.8) protein_coding-promoter-TSS (ENSMUSG00000021135.8) -36 ENSMUSG00000021135.8 ENSMUSG00000021135 ENSMUST00000220266 Slc10a1 protein_coding Interval_43390 chr13 29974288 29975103 + 0 NA intron (ENSMUSG00000016477.18, intron 1 of 6) protein_coding-intron (ENSMUSG00000016477.18, intron 1 of 6) 9696 ENSMUSG00000016477.18 ENSMUSG00000016477 ENSMUST00000146092 E2f3 protein_coding Interval_57115 chr15 6627914 6629461 + 0 NA intron (ENSMUSG00000089647.2, intron 2 of 6) protein_coding-intron (ENSMUSG00000022148.16, intron 2 of 17) -21805 ENSMUSG00000089647.2 ENSMUSG00000089647 ENSMUST00000228703 Gm2245 antisense Interval_56012 chr14 104293693 104294464 + 0 NA intron (ENSMUSG00000115424.1, intron 3 of 4) lincRNA-intron (ENSMUSG00000115424.1, intron 3 of 4) 165258 ENSMUSG00000115424.1 ENSMUSG00000115424 ENSMUST00000228613 D130079A08Rik lincRNA Interval_126953 chr5 98293195 98293638 + 0 NA Intergenic Intergenic -35940 ENSMUSG00000057816.7 ENSMUSG00000057816 ENSMUST00000196339 Cfap299 protein_coding Interval_10619 chr1 172247690 172248006 + 0 NA intron (ENSMUSG00000007107.6, intron 2 of 2) protein_coding-intron (ENSMUSG00000007107.6, intron 7 of 22) 6119 ENSMUSG00000007107.6 ENSMUSG00000007107 ENSMUST00000193316 Atp1a4 protein_coding Interval_89511 chr2 21356997 21357426 + 0 NA intron (ENSMUSG00000085680.1, intron 1 of 1) antisense-intron (ENSMUSG00000085680.1, intron 1 of 1) -10356 ENSMUSG00000045967.11 ENSMUSG00000045967 ENSMUST00000155760 Gpr158 protein_coding Interval_167131 chr9 65555190 65555944 + 0 NA exon (ENSMUSG00000050721.9, exon 6 of 6) protein_coding-exon (ENSMUSG00000050721.9, exon 6 of 6) 23467 ENSMUSG00000050721.9 ENSMUSG00000050721 ENSMUST00000213652 Plekho2 protein_coding Interval_137914 chr6 83325708 83326682 + 0 NA promoter-TSS (ENSMUSG00000043131.14) protein_coding-promoter-TSS (ENSMUSG00000043131.14) -165 ENSMUSG00000043131.14 ENSMUSG00000043131 ENSMUST00000155580 Mob1a protein_coding Interval_92018 chr2 52607998 52608458 + 0 NA intron (ENSMUSG00000017412.15, intron 2 of 13) protein_coding-intron (ENSMUSG00000017412.15, intron 2 of 13) -11526 ENSMUSG00000025201.7 ENSMUSG00000025201 ENSMUST00000183232 Bloc1s2-ps processed_pseudogene Interval_41798 chr12 119470186 119470694 + 0 NA TTS (ENSMUSG00000041886.7) protein_coding-TTS (ENSMUSG00000041886.7) 96811 ENSMUSG00000114186.1 ENSMUSG00000114186 ENSMUST00000223043 Gm48681 lincRNA Interval_50059 chr14 5879270 5881824 + 0 NA promoter-TSS (ENSMUSG00000090707.8) protein_coding-promoter-TSS (ENSMUSG00000090707.8) 3471 ENSMUSG00000091613.1 ENSMUSG00000091613 ENSMUST00000168078 Gm17046 processed_pseudogene Interval_69719 chr16 95766526 95769888 + 0 NA intron (ENSMUSG00000117232.1, intron 2 of 4) lincRNA-intron (ENSMUSG00000117232.1, intron 2 of 4) 8371 ENSMUSG00000104172.1 ENSMUSG00000104172 ENSMUST00000193903 Gm37259 TEC Interval_63922 chr16 4582512 4582735 + 0 NA Intergenic Intergenic -18540 ENSMUSG00000014303.13 ENSMUSG00000014303 ENSMUST00000127120 Glis2 protein_coding Interval_7968 chr1 134932885 134934115 + 0 NA intron (ENSMUSG00000073557.12, intron 1 of 24) protein_coding-intron (ENSMUSG00000073557.12, intron 1 of 23) -29118 ENSMUSG00000026429.9 ENSMUSG00000026429 ENSMUST00000139617 Ube2t protein_coding Interval_78905 chr18 21407571 21409174 + 0 NA Intergenic Intergenic -27441 ENSMUSG00000096341.1 ENSMUSG00000096341 ENSMUST00000093714 Gm22886 snRNA Interval_14194 chr10 28629554 28630274 + 0 NA Intergenic Intergenic 42921 ENSMUSG00000019889.10 ENSMUSG00000019889 ENSMUST00000220404 Ptprk protein_coding Interval_56178 chr14 110936766 110938107 + 0 NA Intergenic Intergenic 158208 ENSMUSG00000115349.1 ENSMUSG00000115349 ENSMUST00000228159 Gm9348 processed_pseudogene Interval_24144 chr11 30704169 30706389 + 0 NA exon (ENSMUSG00000083655.1, exon 1 of 1) processed_pseudogene-exon (ENSMUSG00000083655.1, exon 1 of 1) 622 ENSMUSG00000083655.1 ENSMUSG00000083655 ENSMUST00000118660 Gm12099 processed_pseudogene Interval_136071 chr6 50462579 50463188 + 0 NA Intergenic Intergenic 77151 ENSMUSG00000077357.1 ENSMUSG00000077357 ENSMUST00000104169 Gm26289 snoRNA Interval_21100 chr10 126354758 126355035 + 0 NA Intergenic Intergenic -17079 ENSMUSG00000112482.1 ENSMUSG00000112482 ENSMUST00000218075 1700025K04Rik lincRNA Interval_156932 chr8 61876721 61877530 + 0 NA exon (ENSMUSG00000058056.16, exon 2 of 20) protein_coding-exon (ENSMUSG00000058056.16, exon 2 of 20) -35935 ENSMUSG00000086866.2 ENSMUSG00000086866 ENSMUST00000211790 4930512H18Rik antisense Interval_42341 chr13 12226643 12227859 + 0 NA intron (ENSMUSG00000021311.9, intron 14 of 17) protein_coding-intron (ENSMUSG00000021311.9, intron 15 of 32) 30862 ENSMUSG00000021311.9 ENSMUSG00000021311 ENSMUST00000221290 Mtr protein_coding Interval_37171 chr12 59157349 59157680 + 0 NA intron (ENSMUSG00000021000.17, intron 15 of 29) protein_coding-intron (ENSMUSG00000021000.17, intron 10 of 24) 23442 ENSMUSG00000077505.1 ENSMUSG00000077505 ENSMUST00000104317 Gm24233 snoRNA Interval_170756 chr9 110553559 110553830 + 0 NA intron (ENSMUSG00000044791.16, intron 2 of 5) protein_coding-intron (ENSMUSG00000044791.16, intron 4 of 20) 10483 ENSMUSG00000104983.1 ENSMUSG00000104983 ENSMUST00000199595 Gm42763 TEC Interval_95136 chr2 104183219 104183550 + 0 NA intron (ENSMUSG00000068373.15, intron 16 of 20) protein_coding-intron (ENSMUSG00000068373.15, intron 16 of 20) 44854 ENSMUSG00000089606.1 ENSMUSG00000089606 ENSMUST00000158981 Gm22501 snoRNA Interval_49070 chr13 107709546 107710679 + 0 NA Intergenic Intergenic 22715 ENSMUSG00000102000.6 ENSMUSG00000102000 ENSMUST00000188490 1700006H21Rik lincRNA Interval_167872 chr9 73184876 73185144 + 0 NA Intergenic Intergenic -7473 ENSMUSG00000098875.1 ENSMUSG00000098875 ENSMUST00000183507 Gm27211 lincRNA Interval_113922 chr4 59871027 59871575 + 0 NA intron (ENSMUSG00000028385.14, intron 3 of 8) protein_coding-intron (ENSMUSG00000028385.14, intron 3 of 8) -13393 ENSMUSG00000028385.14 ENSMUSG00000028385 ENSMUST00000143185 Snx30 protein_coding Interval_83295 chr18 83839841 83841878 + 0 NA Intergenic Intergenic -13253 ENSMUSG00000118024.1 ENSMUSG00000118024 ENSMUST00000237374 Gm50419 lincRNA Interval_129960 chr5 123323894 123324757 + 0 NA exon (ENSMUSG00000029442.18, exon 7 of 8) protein_coding-exon (ENSMUSG00000029442.18, exon 7 of 8) -14001 ENSMUSG00000087063.1 ENSMUSG00000087063 ENSMUST00000133476 Gm15857 antisense Interval_25681 chr11 50746281 50746492 + 0 NA intron (ENSMUSG00000036545.9, intron 4 of 20) protein_coding-intron (ENSMUSG00000036545.9, intron 4 of 21) -20842 ENSMUSG00000085902.1 ENSMUSG00000085902 ENSMUST00000144876 Gm12200 antisense Interval_132522 chr5 145733466 145734133 + 0 NA Intergenic Intergenic -13663 ENSMUSG00000075551.4 ENSMUSG00000075551 ENSMUST00000094111 Cyp3a41a protein_coding Interval_149776 chr7 101384821 101386284 + 0 NA promoter-TSS (ENSMUSG00000032812.18) protein_coding-promoter-TSS (ENSMUSG00000032812.18) -56 ENSMUSG00000032812.18 ENSMUSG00000032812 ENSMUST00000124637 Arap1 protein_coding Interval_171117 chr9 114623621 114625038 + 0 NA TTS (ENSMUSG00000056167.8) protein_coding-TTS (ENSMUSG00000056167.8) 15852 ENSMUSG00000056167.8 ENSMUSG00000056167 ENSMUST00000238809 Cnot10 protein_coding Interval_30211 chr11 90650525 90650903 + 0 NA promoter-TSS (ENSMUSG00000020541.12) protein_coding-promoter-TSS (ENSMUSG00000020541.12) 10536 ENSMUSG00000020544.14 ENSMUSG00000020544 ENSMUST00000099960 Cox11 protein_coding Interval_53680 chr14 60835997 60837258 + 0 NA intron (ENSMUSG00000021993.10, intron 14 of 15) protein_coding-intron (ENSMUSG00000021993.10, intron 14 of 18) 52045 ENSMUSG00000021993.10 ENSMUSG00000021993 ENSMUST00000223709 Mipep protein_coding Interval_153914 chr8 10982202 10982760 + 0 NA Intergenic Intergenic -11667 ENSMUSG00000109508.1 ENSMUSG00000109508 ENSMUST00000208277 Gm44956 lincRNA Interval_50328 chr14 11867427 11867648 + 0 NA promoter-TSS (ENSMUSG00000114431.1) TEC-promoter-TSS (ENSMUSG00000114431.1) -57 ENSMUSG00000114431.1 ENSMUSG00000114431 ENSMUST00000224051 Gm48601 TEC Interval_26596 chr11 59103373 59103983 + 0 NA intron (ENSMUSG00000061462.18, intron 15 of 114) protein_coding-intron (ENSMUSG00000061462.18, intron 15 of 89) 32697 ENSMUSG00000061462.18 ENSMUSG00000061462 ENSMUST00000133040 Obscn protein_coding Interval_42794 chr13 19612408 19612988 + 0 NA intron (ENSMUSG00000002808.7, intron 1 of 1) protein_coding-intron (ENSMUSG00000002808.7, intron 1 of 2) 7090 ENSMUSG00000002808.7 ENSMUSG00000002808 ENSMUST00000220755 Epdr1 protein_coding Interval_153250 chr7 142909367 142910122 + 0 NA intron (ENSMUSG00000000214.11, intron 1 of 3) protein_coding-intron (ENSMUSG00000000214.11, intron 1 of 11) 21376 ENSMUSG00000000214.11 ENSMUSG00000000214 ENSMUST00000140344 Th protein_coding Interval_48071 chr13 95764008 95764253 + 0 NA intron (ENSMUSG00000021676.10, intron 2 of 6) protein_coding-intron (ENSMUSG00000021676.10, intron 2 of 35) 27547 ENSMUSG00000118436.1 ENSMUSG00000118436 ENSMUST00000238548 Gm32880 antisense Interval_52719 chr14 48990086 48990326 + 0 NA Intergenic Intergenic 11630 ENSMUSG00000087754.1 ENSMUSG00000087754 ENSMUST00000157129 Gm23470 snRNA Interval_174259 chrX 142377275 142377553 + 0 NA intron (ENSMUSG00000031278.12, intron 1 of 15) protein_coding-intron (ENSMUSG00000031278.12, intron 1 of 15) 29027 ENSMUSG00000082929.1 ENSMUSG00000082929 ENSMUST00000121648 Gm6067 processed_pseudogene Interval_142182 chr6 137940615 137942385 + 0 NA Intergenic Intergenic -21529 ENSMUSG00000094466.1 ENSMUSG00000094466 ENSMUST00000177773 Gm24308 miRNA Interval_169043 chr9 90906258 90906575 + 0 NA Intergenic Intergenic 1781 ENSMUSG00000102076.1 ENSMUSG00000102076 ENSMUST00000188131 Gm20561 processed_pseudogene Interval_174712 chrX 163957651 163959157 + 0 NA promoter-TSS (ENSMUSG00000031370.12) protein_coding-promoter-TSS (ENSMUSG00000031370.12) 148 ENSMUSG00000031370.12 ENSMUSG00000031370 ENSMUST00000127370 Zrsr2 protein_coding Interval_33480 chr11 116802844 116803258 + 0 NA TTS (ENSMUSG00000020814.13) protein_coding-TTS (ENSMUSG00000020814.13) 24952 ENSMUSG00000020814.13 ENSMUSG00000020814 ENSMUST00000150015 Mxra7 protein_coding Interval_91848 chr2 50275339 50277341 + 0 NA Intergenic Intergenic 20083 ENSMUSG00000026766.16 ENSMUSG00000026766 ENSMUST00000133768 Mmadhc protein_coding Interval_108538 chr3 128278428 128278636 + 0 NA Intergenic Intergenic 2559 ENSMUSG00000106119.1 ENSMUSG00000106119 ENSMUST00000197882 Gm43656 processed_pseudogene Interval_174139 chrX 136170876 136172707 + 0 NA intron (ENSMUSG00000051579.10, intron 1 of 3) protein_coding-intron (ENSMUSG00000051579.10, intron 1 of 2) 460 ENSMUSG00000051579.10 ENSMUSG00000051579 ENSMUST00000136533 Tceal8 protein_coding Interval_86753 chr19 43623736 43624205 + 0 NA Intergenic Intergenic 1524 ENSMUSG00000092871.1 ENSMUSG00000092871 ENSMUST00000175130 Gm22646 miRNA Interval_48617 chr13 100684095 100684607 + 0 NA exon (ENSMUSG00000048924.14, exon 6 of 12) protein_coding-exon (ENSMUSG00000048924.14, exon 6 of 12) 14634 ENSMUSG00000048924.14 ENSMUSG00000048924 ENSMUST00000057325 Ccdc125 protein_coding Interval_131645 chr5 139052596 139053197 + 0 NA intron (ENSMUSG00000025855.13, intron 5 of 6) protein_coding-intron (ENSMUSG00000025855.13, intron 6 of 10) 57840 ENSMUSG00000075585.3 ENSMUSG00000075585 ENSMUST00000187923 6330403L08Rik antisense Interval_135150 chr6 36942671 36943040 + 0 NA intron (ENSMUSG00000029837.2, intron 2 of 4) antisense-intron (ENSMUSG00000029837.2, intron 2 of 4) 5807 ENSMUSG00000029837.2 ENSMUSG00000029837 ENSMUST00000031863 1700111E14Rik antisense Interval_112865 chr4 45621864 45622740 + 0 NA Intergenic Intergenic -17442 ENSMUSG00000085980.2 ENSMUSG00000085980 ENSMUST00000211200 Gm12408 lincRNA Interval_164325 chr9 35360051 35360405 + 0 NA Intergenic Intergenic 2885 ENSMUSG00000103259.1 ENSMUSG00000103259 ENSMUST00000193707 2610105M22Rik TEC Interval_156849 chr8 61127387 61127987 + 0 NA intron (ENSMUSG00000031644.19, intron 34 of 34) protein_coding-intron (ENSMUSG00000031644.19, intron 32 of 32) -15185 ENSMUSG00000080956.1 ENSMUSG00000080956 ENSMUST00000120685 Gm16179 processed_pseudogene Interval_41028 chr12 110687608 110690929 + 0 NA Intergenic Intergenic -6656 ENSMUSG00000056508.6 ENSMUSG00000056508 ENSMUST00000222915 1700001K19Rik protein_coding Interval_170770 chr9 110653623 110654532 + 0 NA promoter-TSS (ENSMUSG00000056724.15) protein_coding-promoter-TSS (ENSMUSG00000056724.15) 65 ENSMUSG00000056724.15 ENSMUSG00000056724 ENSMUST00000149089 Nbeal2 protein_coding Interval_156708 chr8 57503772 57504545 + 0 NA intron (ENSMUSG00000096917.2, intron 2 of 2) processed_transcript-intron (ENSMUSG00000096917.2, intron 2 of 2) -1657 ENSMUSG00000096917.2 ENSMUSG00000096917 ENSMUST00000210752 2500002B13Rik processed_transcript Interval_143111 chr6 149421357 149421857 + 0 NA intron (ENSMUSG00000003452.15, intron 1 of 9) protein_coding-intron (ENSMUSG00000003452.15, intron 1 of 9) 12721 ENSMUSG00000003452.15 ENSMUSG00000003452 ENSMUST00000140759 Bicd1 protein_coding Interval_115494 chr4 99432913 99434297 + 0 NA Intergenic Intergenic -2351 ENSMUSG00000081150.1 ENSMUSG00000081150 ENSMUST00000118675 Gm12684 processed_pseudogene Interval_126499 chr5 89202167 89204383 + 0 NA intron (ENSMUSG00000060961.16, intron 19 of 25) protein_coding-intron (ENSMUSG00000060961.16, intron 18 of 24) 232353 ENSMUSG00000035540.12 ENSMUSG00000035540 ENSMUST00000200534 Gc protein_coding Interval_6770 chr1 119368631 119369663 + 0 NA intron (ENSMUSG00000101179.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000101179.1, intron 1 of 2) 39947 ENSMUSG00000101179.1 ENSMUSG00000101179 ENSMUST00000186504 Gm29455 lincRNA Interval_104988 chr3 79535922 79537069 + 0 NA intron (ENSMUSG00000061175.12, intron 1 of 17) protein_coding-intron (ENSMUSG00000061175.12, intron 1 of 16) -4619 ENSMUSG00000061175.12 ENSMUSG00000061175 ENSMUST00000139171 Fnip2 protein_coding Interval_2302 chr1 37922755 37923636 + 0 NA Intergenic Intergenic -6702 ENSMUSG00000061584.6 ENSMUSG00000061584 ENSMUST00000078307 Lyg2 protein_coding Interval_68763 chr16 85800826 85804571 + 0 NA exon (ENSMUSG00000022893.14, exon 1 of 9) protein_coding-exon (ENSMUSG00000022893.14, exon 1 of 9) -3060 ENSMUSG00000022893.14 ENSMUSG00000022893 ENSMUST00000138474 Adamts1 protein_coding Interval_103025 chr3 34601267 34601609 + 0 NA intron (ENSMUSG00000105222.1, intron 1 of 3) processed_transcript-intron (ENSMUSG00000105265.4, intron 3 of 4) 810 ENSMUSG00000105222.1 ENSMUSG00000105222 ENSMUST00000199244 Gm42205 lincRNA Interval_94614 chr2 92673711 92674578 + 0 NA Intergenic Intergenic -68086 ENSMUSG00000085976.1 ENSMUSG00000085976 ENSMUST00000152230 Gm13816 lincRNA Interval_63987 chr16 5049361 5051050 + 0 NA promoter-TSS (ENSMUSG00000022536.14) protein_coding-promoter-TSS (ENSMUSG00000022536.14) 148 ENSMUSG00000039473.8 ENSMUSG00000039473 ENSMUST00000229386 Ubn1 protein_coding Interval_47387 chr13 82924842 82925321 + 0 NA Intergenic Intergenic -140376 ENSMUSG00000114372.1 ENSMUSG00000114372 ENSMUST00000225970 2310067P03Rik lincRNA Interval_123341 chr5 31578600 31579121 + 0 NA Intergenic Intergenic -2219 ENSMUSG00000107015.1 ENSMUSG00000107015 ENSMUST00000202297 2900076G11Rik TEC Interval_165170 chr9 44982736 44983369 + 0 NA intron (ENSMUSG00000032094.8, intron 1 of 4) protein_coding-intron (ENSMUSG00000032094.8, intron 1 of 4) -2621 ENSMUSG00000002033.14 ENSMUSG00000002033 ENSMUST00000160886 Cd3g protein_coding Interval_12201 chr1 190805173 190805545 + 0 NA intron (ENSMUSG00000089872.10, intron 1 of 5) protein_coding-intron (ENSMUSG00000089872.10, intron 10 of 14) 94358 ENSMUSG00000089872.10 ENSMUSG00000089872 ENSMUST00000159066 Rps6kc1 protein_coding Interval_32466 chr11 107695436 107695908 + 0 NA Intergenic Intergenic 20850 ENSMUSG00000020722.5 ENSMUSG00000020722 ENSMUST00000021065 Cacng1 protein_coding Interval_88554 chr2 6074933 6075642 + 0 NA Intergenic Intergenic 24860 ENSMUSG00000043241.14 ENSMUSG00000043241 ENSMUST00000144901 Upf2 protein_coding Interval_165386 chr9 47165805 47168146 + 0 NA intron (ENSMUSG00000111669.1, intron 2 of 4) lincRNA-intron (ENSMUSG00000111669.1, intron 2 of 4) 60120 ENSMUSG00000111669.1 ENSMUSG00000111669 ENSMUST00000217115 Gm31698 lincRNA Interval_1922 chr1 34569665 34570771 + 0 NA Intergenic Intergenic -9439 ENSMUSG00000045174.10 ENSMUSG00000045174 ENSMUST00000052670 Amer3 protein_coding Interval_45935 chr13 59438158 59438553 + 0 NA Intergenic Intergenic -19101 ENSMUSG00000114623.1 ENSMUSG00000114623 ENSMUST00000225137 Gm34788 lincRNA Interval_44569 chr13 46257706 46258116 + 0 NA Intergenic Intergenic -15810 ENSMUSG00000063529.3 ENSMUSG00000063529 ENSMUST00000076622 Stmnd1 protein_coding Interval_80663 chr18 45896610 45897618 + 0 NA promoter-TSS (ENSMUSG00000098284.8) antisense-promoter-TSS (ENSMUSG00000098284.8) -39742 ENSMUSG00000098284.8 ENSMUSG00000098284 ENSMUST00000238177 A330093E20Rik antisense Interval_49597 chr13 113336935 113338013 + 0 NA intron (ENSMUSG00000021763.17, intron 5 of 9) protein_coding-intron (ENSMUSG00000021763.17, intron 5 of 9) 44315 ENSMUSG00000021763.17 ENSMUSG00000021763 ENSMUST00000135096 BC067074 protein_coding Interval_143043 chr6 148868997 148869219 + 0 NA exon (ENSMUSG00000030309.16, exon 9 of 19) protein_coding-exon (ENSMUSG00000030309.16, exon 9 of 19) 27054 ENSMUSG00000030309.16 ENSMUSG00000030309 ENSMUST00000122909 Caprin2 protein_coding Interval_117591 chr4 124881160 124882739 + 0 NA exon (ENSMUSG00000028876.7, exon 1 of 3) protein_coding-exon (ENSMUSG00000028876.7, exon 1 of 3) 12833 ENSMUSG00000085263.1 ENSMUSG00000085263 ENSMUST00000154947 1700125G02Rik antisense Interval_154062 chr8 12416795 12417045 + 0 NA intron (ENSMUSG00000047935.17, intron 1 of 6) sense_overlapping-intron (ENSMUSG00000047935.17, intron 1 of 8) 20517 ENSMUSG00000092656.1 ENSMUSG00000092656 ENSMUST00000174915 Gm25239 miRNA Interval_59477 chr15 53688250 53689022 + 0 NA intron (ENSMUSG00000058656.13, intron 2 of 3) protein_coding-intron (ENSMUSG00000058656.13, intron 3 of 4) 66981 ENSMUSG00000115761.1 ENSMUSG00000115761 ENSMUST00000227291 1700015H07Rik antisense Interval_67509 chr16 50029770 50030167 + 0 NA Intergenic Intergenic -81105 ENSMUSG00000098028.1 ENSMUSG00000098028 ENSMUST00000182962 Gm8824 processed_pseudogene Interval_71266 chr17 21744027 21744235 + 0 NA intron (ENSMUSG00000061544.13, intron 5 of 5) protein_coding-intron (ENSMUSG00000061544.13, intron 5 of 5) 10407 ENSMUSG00000061544.13 ENSMUSG00000061544 ENSMUST00000182603 Zfp229 protein_coding Interval_84296 chr19 9911343 9912315 + 0 NA Intergenic Intergenic 3671 ENSMUSG00000080659.1 ENSMUSG00000080659 ENSMUST00000117009 Gm24484 miRNA Interval_54081 chr14 65075880 65077513 + 0 NA exon (ENSMUSG00000021978.9, exon 3 of 7) protein_coding-exon (ENSMUSG00000021978.9, exon 3 of 7) 21409 ENSMUSG00000021978.9 ENSMUSG00000021978 ENSMUST00000223989 Extl3 protein_coding Interval_85726 chr19 30109397 30109748 + 0 NA intron (ENSMUSG00000024827.10, intron 21 of 24) protein_coding-intron (ENSMUSG00000024827.10, intron 21 of 24) 31068 ENSMUSG00000024817.13 ENSMUSG00000024817 ENSMUST00000143769 Uhrf2 protein_coding Interval_135306 chr6 38204761 38205442 + 0 NA intron (ENSMUSG00000063455.16, intron 1 of 19) protein_coding-intron (ENSMUSG00000063455.16, intron 1 of 19) 48908 ENSMUSG00000063455.16 ENSMUSG00000063455 ENSMUST00000152464 D630045J12Rik protein_coding Interval_17497 chr10 77236951 77238458 + 0 NA Intergenic Intergenic 21519 ENSMUSG00000078444.3 ENSMUSG00000078444 ENSMUST00000105408 Gm10941 bidirectional_promoter_lncRNA Interval_161061 chr8 117241693 117242538 + 0 NA Intergenic Intergenic 83978 ENSMUSG00000052557.11 ENSMUSG00000052557 ENSMUST00000162997 Gan protein_coding Interval_124860 chr5 57421925 57422941 + 0 NA Intergenic Intergenic -29193 ENSMUSG00000105693.1 ENSMUSG00000105693 ENSMUST00000198767 Gm43706 TEC Interval_97445 chr2 136549858 136550253 + 0 NA TTS (ENSMUSG00000074771.10) protein_coding-TTS (ENSMUSG00000074771.10) 34540 ENSMUSG00000074771.10 ENSMUSG00000074771 ENSMUST00000138967 Ankef1 protein_coding Interval_33965 chr11 119707552 119708222 + 0 NA intron (ENSMUSG00000025583.15, intron 3 of 32) protein_coding-intron (ENSMUSG00000025583.15, intron 3 of 33) -38514 ENSMUSG00000088670.1 ENSMUSG00000088670 ENSMUST00000158045 Gm23663 snoRNA Interval_166593 chr9 61155312 61156113 + 0 NA Intergenic Intergenic 17197 ENSMUSG00000110998.1 ENSMUSG00000110998 ENSMUST00000216012 I730028E13Rik lincRNA Interval_119877 chr4 140639253 140641294 + 0 NA intron (ENSMUSG00000040964.16, intron 1 of 27) protein_coding-intron (ENSMUSG00000040964.16, intron 1 of 27) -23208 ENSMUSG00000040964.16 ENSMUSG00000040964 ENSMUST00000154979 Arhgef10l protein_coding Interval_132817 chr5 148077256 148078302 + 0 NA exon (ENSMUSG00000029651.16, exon 2 of 15) protein_coding-exon (ENSMUSG00000029651.16, exon 2 of 15) 106598 ENSMUSG00000066554.6 ENSMUSG00000066554 ENSMUST00000150411 Gm10167 processed_pseudogene Interval_136591 chr6 56291822 56292687 + 0 NA intron (ENSMUSG00000004347.17, intron 4 of 19) protein_coding-intron (ENSMUSG00000004347.17, intron 2 of 18) -119223 ENSMUSG00000106152.1 ENSMUSG00000106152 ENSMUST00000198921 Gm44413 miRNA Interval_158120 chr8 78912422 78913448 + 0 NA Intergenic Intergenic 40979 ENSMUSG00000110094.1 ENSMUSG00000110094 ENSMUST00000209234 Gm45326 lincRNA Interval_55755 chr14 99619998 99620625 + 0 NA promoter-TSS (ENSMUSG00000115550.1) lincRNA-promoter-TSS (ENSMUSG00000115550.1) -295 ENSMUSG00000115550.1 ENSMUSG00000115550 ENSMUST00000226602 Gm49225 lincRNA Interval_89403 chr2 20486250 20486565 + 0 NA intron (ENSMUSG00000036617.17, intron 2 of 3) protein_coding-intron (ENSMUSG00000036617.17, intron 3 of 7) -23640 ENSMUSG00000036617.17 ENSMUSG00000036617 ENSMUST00000156587 Etl4 protein_coding Interval_65211 chr16 20547306 20549052 + 0 NA promoter-TSS (ENSMUSG00000003234.16) protein_coding-promoter-TSS (ENSMUSG00000003234.16) 277 ENSMUSG00000080797.2 ENSMUSG00000080797 ENSMUST00000119553 Gm15760 transcribed_processed_pseudogene Interval_17300 chr10 75693647 75693886 + 0 NA intron (ENSMUSG00000020196.10, intron 2 of 2) protein_coding-intron (ENSMUSG00000020196.10, intron 28 of 36) 38854 ENSMUSG00000020196.10 ENSMUSG00000020196 ENSMUST00000218480 Cabin1 protein_coding Interval_140265 chr6 115901145 115902321 + 0 NA promoter-TSS (ENSMUSG00000030323.13) protein_coding-promoter-TSS (ENSMUSG00000030323.13) -30823 ENSMUSG00000030324.8 ENSMUSG00000030324 ENSMUST00000203323 Rho protein_coding Interval_133804 chr6 12432411 12432624 + 0 NA intron (ENSMUSG00000032625.14, intron 6 of 27) protein_coding-intron (ENSMUSG00000032625.14, intron 6 of 27) -133001 ENSMUSG00000083794.1 ENSMUSG00000083794 ENSMUST00000118647 Gm16123 processed_pseudogene Interval_173305 chrX 77667029 77668287 + 0 NA Intergenic Intergenic 7777 ENSMUSG00000087152.3 ENSMUSG00000087152 ENSMUST00000145498 Cldn34-ps processed_pseudogene Interval_148895 chr7 89903155 89904104 + 0 NA promoter-TSS (ENSMUSG00000039391.11) protein_coding-promoter-TSS (ENSMUSG00000039391.11) 0 ENSMUSG00000039391.11 ENSMUSG00000039391 ENSMUST00000041195 Ccdc81 protein_coding Interval_58391 chr15 34094431 34094781 + 0 NA intron (ENSMUSG00000022255.16, intron 1 of 5) protein_coding-intron (ENSMUSG00000022255.16, intron 1 of 11) -32338 ENSMUSG00000115276.1 ENSMUSG00000115276 ENSMUST00000228274 9930017N22Rik TEC Interval_140959 chr6 123088330 123088515 + 0 NA Intergenic Intergenic -26173 ENSMUSG00000108212.1 ENSMUSG00000108212 ENSMUST00000205142 Gm44132 processed_pseudogene Interval_141164 chr6 125361471 125362272 + 0 NA TTS (ENSMUSG00000038167.6) protein_coding-TTS (ENSMUSG00000038167.6) 4106 ENSMUSG00000030341.17 ENSMUSG00000030341 ENSMUST00000134803 Tnfrsf1a protein_coding Interval_57752 chr15 18604715 18604952 + 0 NA Intergenic Intergenic -30873 ENSMUSG00000115254.1 ENSMUSG00000115254 ENSMUST00000228241 Gm49140 processed_pseudogene Interval_71987 chr17 27449656 27449875 + 0 NA TTS (ENSMUSG00000063239.17) protein_coding-TTS (ENSMUSG00000063239.17) 12236 ENSMUSG00000116682.1 ENSMUSG00000116682 ENSMUST00000231804 Gm49789 TEC Interval_22588 chr11 11972518 11973821 + 0 NA intron (ENSMUSG00000020176.17, intron 2 of 3) protein_coding-intron (ENSMUSG00000020176.17, intron 2 of 16) 53155 ENSMUSG00000020176.17 ENSMUSG00000020176 ENSMUST00000143915 Grb10 protein_coding Interval_121611 chr5 3893414 3894473 + 0 NA promoter-TSS (ENSMUSG00000040429.6) protein_coding-promoter-TSS (ENSMUSG00000040429.6) -47 ENSMUSG00000040429.6 ENSMUSG00000040429 ENSMUST00000196417 Mterf1a protein_coding Interval_32924 chr11 113159510 113159714 + 0 NA intron (ENSMUSG00000087259.7, intron 1 of 3) lincRNA-intron (ENSMUSG00000087259.7, intron 1 of 2) 13465 ENSMUSG00000087259.7 ENSMUSG00000087259 ENSMUST00000150712 2610035D17Rik lincRNA Interval_77294 chr17 87858725 87861810 + 0 NA Intergenic Intergenic 35194 ENSMUSG00000117466.1 ENSMUSG00000117466 ENSMUST00000234350 Gm50039 lincRNA Interval_129293 chr5 118726021 118726493 + 0 NA intron (ENSMUSG00000018076.12, intron 8 of 30) protein_coding-intron (ENSMUSG00000018076.12, intron 8 of 30) 18855 ENSMUSG00000107364.1 ENSMUSG00000107364 ENSMUST00000201096 Gm43051 TEC Interval_160467 chr8 109754617 109755870 + 0 NA Intergenic Intergenic -23130 ENSMUSG00000069895.4 ENSMUSG00000069895 ENSMUST00000212726 Atxn1l protein_coding Interval_46967 chr13 73815245 73816321 + 0 NA TTS (ENSMUSG00000017756.9) protein_coding-TTS (ENSMUSG00000017756.9) 11174 ENSMUSG00000017756.9 ENSMUSG00000017756 ENSMUST00000221813 Slc12a7 protein_coding Interval_58742 chr15 37664000 37664625 + 0 NA intron (ENSMUSG00000051359.15, intron 1 of 2) protein_coding-intron (ENSMUSG00000051359.15, intron 1 of 6) -36392 ENSMUSG00000086125.1 ENSMUSG00000086125 ENSMUST00000136305 Gm15942 antisense Interval_118590 chr4 132648499 132650268 + 0 NA intron (ENSMUSG00000028886.15, intron 1 of 15) protein_coding-intron (ENSMUSG00000028886.15, intron 1 of 14) 10337 ENSMUSG00000028886.15 ENSMUSG00000028886 ENSMUST00000130833 Eya3 protein_coding Interval_66106 chr16 31648247 31648839 + 0 NA Intergenic Intergenic -30698 ENSMUSG00000116781.1 ENSMUSG00000116781 ENSMUST00000232316 Gm49712 TEC Interval_116733 chr4 116989657 116990020 + 0 NA TTS (ENSMUSG00000028684.14) protein_coding-TTS (ENSMUSG00000028684.14) 3759 ENSMUSG00000028684.14 ENSMUSG00000028684 ENSMUST00000139816 Urod protein_coding Interval_117418 chr4 123599019 123599505 + 0 NA intron (ENSMUSG00000028649.21, intron 1 of 97) protein_coding-intron (ENSMUSG00000028649.21, intron 1 of 92) 14481 ENSMUSG00000028649.21 ENSMUSG00000028649 ENSMUST00000146000 Macf1 protein_coding Interval_104470 chr3 66057253 66057774 + 0 NA intron (ENSMUSG00000027831.9, intron 5 of 5) protein_coding-intron (ENSMUSG00000027831.9, intron 13 of 13) -25994 ENSMUSG00000103369.1 ENSMUSG00000103369 ENSMUST00000192096 Gm6546 processed_pseudogene Interval_158368 chr8 83081360 83081585 + 0 NA TTS (ENSMUSG00000109876.1) antisense-TTS (ENSMUSG00000109876.1) 5485 ENSMUSG00000109876.1 ENSMUSG00000109876 ENSMUST00000211485 Gm45449 antisense Interval_68936 chr16 89328941 89330382 + 0 NA Intergenic Intergenic 74207 ENSMUSG00000058368.3 ENSMUSG00000058368 ENSMUST00000078422 Krtap21-1 protein_coding Interval_107405 chr3 107332225 107334386 + 0 NA promoter-TSS (ENSMUSG00000048109.10) protein_coding-promoter-TSS (ENSMUSG00000048109.10) -204 ENSMUSG00000048109.10 ENSMUSG00000048109 ENSMUST00000197769 Rbm15 protein_coding Interval_108563 chr3 129043999 129044252 + 0 NA Intergenic Intergenic 26419 ENSMUSG00000099640.1 ENSMUSG00000099640 ENSMUST00000188986 Gm28543 lincRNA Interval_149660 chr7 100479009 100480556 + 0 NA exon (ENSMUSG00000032942.14, exon 2 of 5) protein_coding-exon (ENSMUSG00000032942.14, exon 2 of 5) -4936 ENSMUSG00000099137.1 ENSMUSG00000099137 ENSMUST00000184875 Gm10603 antisense Interval_35629 chr12 26302010 26303465 + 0 NA intron (ENSMUSG00000020642.13, intron 1 of 1) protein_coding-intron (ENSMUSG00000020642.13, intron 1 of 1) 7541 ENSMUSG00000020642.13 ENSMUSG00000020642 ENSMUST00000221994 Rnf144a protein_coding Interval_19143 chr10 95074498 95075440 + 0 NA Intergenic Intergenic -41410 ENSMUSG00000112677.1 ENSMUSG00000112677 ENSMUST00000219913 Gm48868 TEC Interval_30074 chr11 89004451 89005729 + 0 NA intron (ENSMUSG00000000275.16, intron 2 of 8) protein_coding-intron (ENSMUSG00000000275.16, intron 2 of 7) 5714 ENSMUSG00000000275.16 ENSMUSG00000000275 ENSMUST00000000284 Trim25 protein_coding Interval_93551 chr2 74066720 74067076 + 0 NA Intergenic Intergenic 35444 ENSMUSG00000085387.1 ENSMUSG00000085387 ENSMUST00000151443 A630050E04Rik lincRNA Interval_66678 chr16 36070968 36072558 + 0 NA promoter-TSS (ENSMUSG00000003955.8) protein_coding-promoter-TSS (ENSMUSG00000003955.8) -17441 ENSMUSG00000075229.11 ENSMUSG00000075229 ENSMUST00000231239 Ccdc58 protein_coding Interval_130095 chr5 124232475 124233385 + 0 NA intron (ENSMUSG00000090220.1, intron 2 of 5) protein_coding-intron (ENSMUSG00000029406.15, intron 1 of 25) 3205 ENSMUSG00000090220.1 ENSMUSG00000090220 ENSMUST00000161697 Pitpnm2os1 antisense Interval_23534 chr11 23185211 23186495 + 0 NA Intergenic Intergenic -12947 ENSMUSG00000088495.1 ENSMUSG00000088495 ENSMUST00000157870 Gm24398 snoRNA Interval_148001 chr7 77526233 77527081 + 0 NA Intergenic Intergenic 114084 ENSMUSG00000108324.1 ENSMUSG00000108324 ENSMUST00000206827 Gm44608 TEC Interval_59668 chr15 57755675 57757002 + 0 NA intron (ENSMUSG00000071757.10, intron 1 of 2) protein_coding-intron (ENSMUSG00000071757.10, intron 1 of 3) -17672 ENSMUSG00000047807.10 ENSMUSG00000047807 ENSMUST00000176703 9330154K18Rik antisense Interval_30059 chr11 88937827 88938177 + 0 NA intron (ENSMUSG00000000278.10, intron 6 of 12) protein_coding-intron (ENSMUSG00000000278.10, intron 6 of 12) 17463 ENSMUSG00000000278.10 ENSMUSG00000000278 ENSMUST00000000287 Scpep1 protein_coding Interval_43653 chr13 34520565 34521144 + 0 NA Intergenic Intergenic -14343 ENSMUSG00000113998.1 ENSMUSG00000113998 ENSMUST00000223275 Gm40909 lincRNA Interval_6200 chr1 101640793 101641003 + 0 NA Intergenic Intergenic 113645 ENSMUSG00000100065.1 ENSMUSG00000100065 ENSMUST00000189423 Gm18969 processed_pseudogene Interval_12300 chr1 191532153 191532468 + 0 NA Intergenic Intergenic 4582 ENSMUSG00000102246.1 ENSMUSG00000102246 ENSMUST00000192556 9430037O13Rik TEC Interval_111875 chr4 32176108 32177407 + 0 NA Intergenic Intergenic 26971 ENSMUSG00000083872.1 ENSMUSG00000083872 ENSMUST00000119323 Gm11928 processed_pseudogene Interval_168296 chr9 78492980 78493860 + 0 NA Intergenic Intergenic -12579 ENSMUSG00000037742.14 ENSMUSG00000037742 ENSMUST00000156988 Eef1a1 protein_coding Interval_102378 chr3 22807315 22807500 + 0 NA Intergenic Intergenic -4800 ENSMUSG00000102233.1 ENSMUSG00000102233 ENSMUST00000194174 Gm37889 TEC Interval_25744 chr11 51289552 51290894 + 0 NA exon (ENSMUSG00000063564.13, exon 1 of 29) protein_coding-exon (ENSMUSG00000063564.13, exon 1 of 29) 19788 ENSMUSG00000093734.1 ENSMUSG00000093734 ENSMUST00000177296 Gm25082 misc_RNA Interval_117870 chr4 126760685 126760889 + 0 NA intron (ENSMUSG00000028830.14, intron 2 of 2) protein_coding-intron (ENSMUSG00000028830.14, intron 2 of 20) -7349 ENSMUSG00000028833.13 ENSMUSG00000028833 ENSMUST00000127079 Ncdn protein_coding Interval_33746 chr11 118247770 118249173 + 0 NA promoter-TSS (ENSMUSG00000017132.17) protein_coding-promoter-TSS (ENSMUSG00000017132.17) -35729 ENSMUSG00000017132.17 ENSMUSG00000017132 ENSMUST00000151165 Cyth1 protein_coding Interval_4763 chr1 78488391 78489634 + 0 NA promoter-TSS (ENSMUSG00000026245.16) protein_coding-promoter-TSS (ENSMUSG00000026245.16) -175 ENSMUSG00000026245.16 ENSMUSG00000026245 ENSMUST00000191021 Farsb protein_coding Interval_96384 chr2 122085742 122086183 + 0 NA intron (ENSMUSG00000033396.13, intron 17 of 39) protein_coding-intron (ENSMUSG00000033396.13, intron 17 of 39) 32413 ENSMUSG00000033396.13 ENSMUSG00000033396 ENSMUST00000135847 Spg11 protein_coding Interval_160761 chr8 111991939 111992584 + 0 NA promoter-TSS (ENSMUSG00000031949.17) protein_coding-promoter-TSS (ENSMUSG00000031949.17) 41 ENSMUSG00000031949.17 ENSMUSG00000031949 ENSMUST00000120457 Adat1 protein_coding Interval_496 chr1 6416428 6416618 + 0 NA Intergenic Intergenic 24773 ENSMUSG00000103845.1 ENSMUSG00000103845 ENSMUST00000194240 Gm19026 processed_pseudogene Interval_86670 chr19 42439414 42440705 + 0 NA Intergenic Intergenic -8274 ENSMUSG00000042401.8 ENSMUSG00000042401 ENSMUST00000238182 Crtac1 protein_coding Interval_69056 chr16 90350152 90350656 + 0 NA promoter-TSS (ENSMUSG00000116656.1) processed_transcript-promoter-TSS (ENSMUSG00000116656.1) -762 ENSMUSG00000116656.1 ENSMUSG00000116656 ENSMUST00000231405 Gm49708 processed_transcript Interval_92755 chr2 65145184 65146095 + 0 NA intron (ENSMUSG00000034903.18, intron 2 of 3) protein_coding-intron (ENSMUSG00000034903.18, intron 2 of 12) -93117 ENSMUSG00000086881.1 ENSMUSG00000086881 ENSMUST00000137582 Gm13594 antisense Interval_1165 chr1 16485397 16485936 + 0 NA intron (ENSMUSG00000025920.19, intron 1 of 9) protein_coding-intron (ENSMUSG00000025920.19, intron 2 of 12) 33640 ENSMUSG00000025920.19 ENSMUSG00000025920 ENSMUST00000144138 Stau2 protein_coding Interval_161195 chr8 118482078 118482672 + 0 NA intron (ENSMUSG00000031841.19, intron 2 of 8) protein_coding-intron (ENSMUSG00000031841.19, intron 1 of 13) -55776 ENSMUSG00000064801.1 ENSMUSG00000064801 ENSMUST00000082867 Gm24035 snRNA Interval_72646 chr17 31289455 31291058 + 0 NA intron (ENSMUSG00000024036.16, intron 2 of 4) protein_coding-intron (ENSMUSG00000024036.16, intron 2 of 4) 6433 ENSMUSG00000118295.1 ENSMUSG00000118295 ENSMUST00000236752 Gm8437 transcribed_processed_pseudogene Interval_139000 chr6 94150884 94151228 + 0 NA intron (ENSMUSG00000045095.16, intron 2 of 2) protein_coding-intron (ENSMUSG00000045095.16, intron 1 of 21) 172978 ENSMUSG00000107545.1 ENSMUSG00000107545 ENSMUST00000204466 Gm44307 processed_pseudogene Interval_79837 chr18 35491846 35492036 + 0 NA intron (ENSMUSG00000117731.1, intron 1 of 1) protein_coding-intron (ENSMUSG00000024357.10, intron 1 of 9) 2837 ENSMUSG00000117731.1 ENSMUSG00000117731 ENSMUST00000237123 Gm50145 antisense Interval_129475 chr5 120439169 120441039 + 0 NA exon (ENSMUSG00000029595.9, exon 5 of 5) protein_coding-exon (ENSMUSG00000029595.9, exon 5 of 5) -8337 ENSMUSG00000098649.2 ENSMUSG00000098649 ENSMUST00000185026 Gm27199 antisense Interval_132945 chr5 148898035 148898392 + 0 NA intron (ENSMUSG00000106892.1, intron 5 of 6) protein_coding-intron (ENSMUSG00000041298.15, intron 4 of 10) -28475 ENSMUSG00000106810.1 ENSMUSG00000106810 ENSMUST00000202134 Gm43600 unprocessed_pseudogene Interval_66479 chr16 34119480 34119798 + 0 NA intron (ENSMUSG00000061751.16, intron 32 of 48) protein_coding-intron (ENSMUSG00000061751.16, intron 33 of 59) -23611 ENSMUSG00000061751.16 ENSMUSG00000061751 ENSMUST00000132569 Kalrn protein_coding Interval_12424 chr1 193354364 193355783 + 0 NA exon (ENSMUSG00000016179.11, exon 5 of 13) protein_coding-exon (ENSMUSG00000016179.11, exon 5 of 13) -11767 ENSMUSG00000103895.1 ENSMUSG00000103895 ENSMUST00000191875 Gm37942 TEC Interval_106775 chr3 100691955 100692749 + 0 NA promoter-TSS (ENSMUSG00000106227.1) lincRNA-promoter-TSS (ENSMUSG00000106227.1) -354 ENSMUSG00000106227.1 ENSMUSG00000106227 ENSMUST00000198003 Gm43464 lincRNA Interval_42626 chr13 17184997 17185917 + 0 NA intron (ENSMUSG00000055137.7, intron 12 of 13) protein_coding-intron (ENSMUSG00000055137.7, intron 12 of 13) -20564 ENSMUSG00000094754.1 ENSMUSG00000094754 ENSMUST00000178071 Gm25020 snRNA Interval_126295 chr5 86190007 86191550 + 0 NA intron (ENSMUSG00000029255.8, intron 1 of 1) protein_coding-intron (ENSMUSG00000029255.8, intron 1 of 2) 7123 ENSMUSG00000029255.8 ENSMUSG00000029255 ENSMUST00000094654 Gnrhr protein_coding Interval_94262 chr2 87090732 87091026 + 0 NA TTS (ENSMUSG00000075161.3) protein_coding-TTS (ENSMUSG00000075161.3) 5129 ENSMUSG00000075161.3 ENSMUSG00000075161 ENSMUST00000099863 Olfr1109 protein_coding Interval_68908 chr16 88380651 88381815 + 0 NA intron (ENSMUSG00000116754.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000116754.1, intron 1 of 2) 463 ENSMUSG00000116754.1 ENSMUSG00000116754 ENSMUST00000231384 Gm33255 lincRNA Interval_63288 chr15 100109021 100110042 + 0 NA intron (ENSMUSG00000023026.16, intron 1 of 37) protein_coding-intron (ENSMUSG00000023026.16, intron 1 of 37) -1370 ENSMUSG00000116311.1 ENSMUSG00000116311 ENSMUST00000229204 4930478M13Rik antisense Interval_11763 chr1 185271393 185272328 + 0 NA intron (ENSMUSG00000039318.12, intron 3 of 11) protein_coding-intron (ENSMUSG00000039318.12, intron 27 of 34) -5938 ENSMUSG00000039318.12 ENSMUSG00000039318 ENSMUST00000195534 Rab3gap2 protein_coding Interval_18654 chr10 88825924 88827134 + 0 NA intron (ENSMUSG00000004356.8, intron 1 of 1) protein_coding-intron (ENSMUSG00000004356.8, intron 1 of 61) 254 ENSMUSG00000004356.8 ENSMUSG00000004356 ENSMUST00000220439 Utp20 protein_coding Interval_107616 chr3 108900289 108900487 + 0 NA Intergenic Intergenic -10682 ENSMUSG00000045326.13 ENSMUSG00000045326 ENSMUST00000139137 Fndc7 protein_coding Interval_154820 chr8 23687347 23687623 + 0 NA intron (ENSMUSG00000037492.16, intron 1 of 7) protein_coding-intron (ENSMUSG00000037492.16, intron 1 of 6) -8520 ENSMUSG00000109413.1 ENSMUSG00000109413 ENSMUST00000207763 Gm45165 TEC Interval_42921 chr13 21399476 21399955 + 0 NA intron (ENSMUSG00000021327.19, intron 1 of 5) protein_coding-intron (ENSMUSG00000021327.19, intron 1 of 5) 3040 ENSMUSG00000021327.19 ENSMUSG00000021327 ENSMUST00000151467 Zkscan3 protein_coding Interval_47871 chr13 94036870 94037855 + 0 NA Intergenic Intergenic -16481 ENSMUSG00000114174.1 ENSMUSG00000114174 ENSMUST00000223240 Cycs-ps3 processed_pseudogene Interval_150259 chr7 109071698 109072318 + 0 NA intron (ENSMUSG00000048330.14, intron 1 of 1) protein_coding-intron (ENSMUSG00000048330.14, intron 1 of 5) 4234 ENSMUSG00000094199.1 ENSMUSG00000094199 ENSMUST00000179144 Gm25450 snRNA Interval_65891 chr16 30090402 30090628 + 0 NA Intergenic Intergenic 2367 ENSMUSG00000116997.1 ENSMUSG00000116997 ENSMUST00000232024 Gm20040 processed_pseudogene Interval_83072 chr18 81051420 81052425 + 0 NA Intergenic Intergenic 5098 ENSMUSG00000118268.1 ENSMUSG00000118268 ENSMUST00000237569 Gm50424 lincRNA Interval_49514 chr13 112606795 112607217 + 0 NA intron (ENSMUSG00000021758.14, intron 17 of 21) protein_coding-intron (ENSMUSG00000021758.14, intron 16 of 20) -11922 ENSMUSG00000114547.1 ENSMUSG00000114547 ENSMUST00000225150 Gm3226 processed_pseudogene Interval_80938 chr18 50753838 50754037 + 0 NA Intergenic Intergenic -152518 ENSMUSG00000048875.3 ENSMUSG00000048875 ENSMUST00000056460 Pudp protein_coding Interval_124398 chr5 45507879 45508151 + 0 NA intron (ENSMUSG00000039682.12, intron 10 of 12) protein_coding-intron (ENSMUSG00000039682.12, intron 10 of 12) -12214 ENSMUSG00000015804.14 ENSMUSG00000015804 ENSMUST00000139586 Med28 protein_coding Interval_120366 chr4 148130258 148132030 + 0 NA promoter-TSS (ENSMUSG00000029005.4) protein_coding-promoter-TSS (ENSMUSG00000029005.4) -446 ENSMUSG00000029005.4 ENSMUSG00000029005 ENSMUST00000030862 Draxin protein_coding Interval_79005 chr18 23880580 23880959 + 0 NA intron (ENSMUSG00000024277.14, intron 6 of 7) protein_coding-intron (ENSMUSG00000024277.14, intron 5 of 6) -63128 ENSMUSG00000117504.1 ENSMUSG00000117504 ENSMUST00000235052 Gm46611 processed_pseudogene Interval_70031 chr17 4778182 4779330 + 0 NA Intergenic Intergenic 14203 ENSMUSG00000116649.1 ENSMUSG00000116649 ENSMUST00000232212 Gm49780 processed_pseudogene Interval_167512 chr9 70175522 70177148 + 0 NA Intergenic Intergenic -27399 ENSMUSG00000077660.1 ENSMUSG00000077660 ENSMUST00000104472 Gm24257 snoRNA Interval_87075 chr19 45988388 45988741 + 0 NA intron (ENSMUSG00000039901.10, intron 1 of 20) protein_coding-intron (ENSMUSG00000039901.10, intron 1 of 25) -9641 ENSMUSG00000097690.2 ENSMUSG00000097690 ENSMUST00000236194 4930505N22Rik bidirectional_promoter_lncRNA Interval_11796 chr1 185481311 185482347 + 0 NA Intergenic Intergenic -5465 ENSMUSG00000102185.1 ENSMUSG00000102185 ENSMUST00000192616 5033404E19Rik transcribed_processed_pseudogene Interval_13448 chr10 18347333 18347849 + 0 NA intron (ENSMUSG00000039835.16, intron 1 of 6) protein_coding-intron (ENSMUSG00000039835.16, intron 1 of 6) -10350 ENSMUSG00000111313.1 ENSMUSG00000111313 ENSMUST00000213578 Gm18942 processed_pseudogene Interval_31413 chr11 100549539 100550643 + 0 NA exon (ENSMUSG00000006784.14, exon 2 of 2) protein_coding-exon (ENSMUSG00000006784.14, exon 2 of 2) 4381 ENSMUSG00000006784.14 ENSMUSG00000006784 ENSMUST00000127389 Ttc25 protein_coding Interval_15699 chr10 53702897 53703117 + 0 NA intron (ENSMUSG00000019856.14, intron 1 of 2) protein_coding-intron (ENSMUSG00000019856.14, intron 1 of 17) -55309 ENSMUSG00000019856.14 ENSMUSG00000019856 ENSMUST00000170839 Fam184a protein_coding Interval_117137 chr4 119921177 119921760 + 0 NA intron (ENSMUSG00000028634.17, intron 1 of 1) protein_coding-intron (ENSMUSG00000028634.17, intron 1 of 8) -111298 ENSMUSG00000028634.17 ENSMUSG00000028634 ENSMUST00000166542 Hivep3 protein_coding Interval_21927 chr11 5245068 5245291 + 0 NA intron (ENSMUSG00000020393.16, intron 1 of 8) protein_coding-intron (ENSMUSG00000020393.16, intron 1 of 8) -6671 ENSMUSG00000064632.1 ENSMUSG00000064632 ENSMUST00000082698 Gm25142 snRNA Interval_76810 chr17 84225074 84225427 + 0 NA intron (ENSMUSG00000024251.10, intron 10 of 12) protein_coding-intron (ENSMUSG00000024251.10, intron 35 of 37) -37303 ENSMUSG00000045817.8 ENSMUSG00000045817 ENSMUST00000060366 Zfp36l2 protein_coding Interval_60806 chr15 76876588 76876810 + 0 NA Intergenic Intergenic -2632 ENSMUSG00000033669.8 ENSMUSG00000033669 ENSMUST00000229990 Zfp7 protein_coding Interval_194 JH792829.1 171390 171689 + 0 NA NA NA NA NA Interval_129715 chr5 121931800 121932376 + 0 NA intron (ENSMUSG00000042589.18, intron 1 of 6) protein_coding-intron (ENSMUSG00000042589.18, intron 2 of 22) -66025 ENSMUSG00000042589.18 ENSMUSG00000042589 ENSMUST00000125267 Cux2 protein_coding Interval_170954 chr9 113220360 113220962 + 0 NA Intergenic Intergenic -30846 ENSMUSG00000111235.1 ENSMUSG00000111235 ENSMUST00000213839 Gm4657 lincRNA Interval_165378 chr9 46905251 46905631 + 0 NA Intergenic Intergenic -8052 ENSMUSG00000099696.6 ENSMUSG00000099696 ENSMUST00000189828 2900052N01Rik lincRNA Interval_96851 chr2 128924028 128924702 + 0 NA Intergenic Intergenic 1327 ENSMUSG00000092719.1 ENSMUSG00000092719 ENSMUST00000174978 Gm22859 miRNA Interval_71738 chr17 25791467 25792915 + 0 NA promoter-TSS (ENSMUSG00000057411.9) protein_coding-promoter-TSS (ENSMUSG00000057411.9) 204 ENSMUSG00000057411.9 ENSMUSG00000057411 ENSMUST00000236161 Fam173a protein_coding Interval_14224 chr10 29143529 29144261 + 0 NA promoter-TSS (ENSMUSG00000038916.7) protein_coding-promoter-TSS (ENSMUSG00000038916.7) -164 ENSMUSG00000038916.7 ENSMUSG00000038916 ENSMUST00000214863 Soga3 protein_coding Interval_63229 chr15 99835238 99835833 + 0 NA TTS (ENSMUSG00000090500.1) antisense-TTS (ENSMUSG00000090500.1) 16515 ENSMUSG00000090500.1 ENSMUSG00000090500 ENSMUST00000169887 Gm17057 antisense Interval_174 JH584304.1 113197 113408 + 0 NA NA NA NA NA Interval_53839 chr14 62555117 62556591 + 0 NA promoter-TSS (ENSMUSG00000035184.15) protein_coding-promoter-TSS (ENSMUSG00000035184.15) 117 ENSMUSG00000035184.15 ENSMUSG00000035184 ENSMUST00000160745 Fam124a protein_coding Interval_2664 chr1 43110366 43111190 + 0 NA intron (ENSMUSG00000010290.7, intron 2 of 3) protein_coding-intron (ENSMUSG00000010290.7, intron 2 of 3) 12068 ENSMUSG00000010290.7 ENSMUSG00000010290 ENSMUST00000010434 AI597479 protein_coding Interval_76359 chr17 79454279 79455310 + 0 NA Intergenic Intergenic 100095 ENSMUSG00000118651.1 ENSMUSG00000118651 ENSMUST00000239444 CT030740.1 antisense Interval_113336 chr4 53525587 53525912 + 0 NA intron (ENSMUSG00000028412.17, intron 3 of 3) protein_coding-intron (ENSMUSG00000028412.17, intron 4 of 15) 38948 ENSMUSG00000084970.1 ENSMUSG00000084970 ENSMUST00000138377 1700060J05Rik antisense Interval_49526 chr13 112719579 112719775 + 0 NA intron (ENSMUSG00000047789.5, intron 11 of 14) protein_coding-intron (ENSMUSG00000047789.5, intron 11 of 14) -15933 ENSMUSG00000047789.5 ENSMUSG00000047789 ENSMUST00000225649 Slc38a9 protein_coding Interval_101039 chr2 174438338 174439439 + 0 NA exon (ENSMUSG00000016256.10, exon 1 of 6) protein_coding-exon (ENSMUSG00000016256.10, exon 1 of 6) 151 ENSMUSG00000016256.10 ENSMUSG00000016256 ENSMUST00000016400 Ctsz protein_coding Interval_9260 chr1 155594153 155594383 + 0 NA intron (ENSMUSG00000033701.13, intron 3 of 7) protein_coding-intron (ENSMUSG00000033701.13, intron 3 of 7) 31151 ENSMUSG00000033701.13 ENSMUSG00000033701 ENSMUST00000192730 Acbd6 protein_coding Interval_107007 chr3 102848428 102849121 + 0 NA intron (ENSMUSG00000027855.13, intron 28 of 32) protein_coding-intron (ENSMUSG00000027855.13, intron 28 of 32) 17184 ENSMUSG00000106545.1 ENSMUSG00000106545 ENSMUST00000197795 Gm33952 processed_pseudogene Interval_28588 chr11 77006626 77007381 + 0 NA intron (ENSMUSG00000020838.12, intron 2 of 14) protein_coding-intron (ENSMUSG00000020838.12, intron 1 of 13) 2870 ENSMUSG00000087398.1 ENSMUSG00000087398 ENSMUST00000138817 Gm12343 antisense Interval_170270 chr9 106598427 106598776 + 0 NA Intergenic Intergenic -27380 ENSMUSG00000091129.3 ENSMUSG00000091129 ENSMUST00000171091 Iqcf6 protein_coding Interval_112249 chr4 38367317 38367584 + 0 NA Intergenic Intergenic 103532 ENSMUSG00000084148.1 ENSMUSG00000084148 ENSMUST00000119012 Gm12380 processed_pseudogene Interval_66822 chr16 37901460 37901888 + 0 NA Intergenic Intergenic -14822 ENSMUSG00000046961.8 ENSMUSG00000046961 ENSMUST00000061274 Gpr156 protein_coding Interval_151183 chr7 119037376 119038225 + 0 NA Intergenic Intergenic -53156 ENSMUSG00000008734.9 ENSMUSG00000008734 ENSMUST00000207614 Gprc5b protein_coding Interval_172994 chrX 60254159 60255903 + 0 NA intron (ENSMUSG00000062949.13, intron 22 of 29) protein_coding-intron (ENSMUSG00000062949.13, intron 22 of 28) -2521 ENSMUSG00000094896.1 ENSMUSG00000094896 ENSMUST00000083197 Gm22287 snRNA Interval_95644 chr2 113390616 113391591 + 0 NA intron (ENSMUSG00000085448.1, intron 3 of 3) protein_coding-intron (ENSMUSG00000044042.19, intron 2 of 18) 6422 ENSMUSG00000084391.1 ENSMUSG00000084391 ENSMUST00000120404 Gm13967 processed_pseudogene Interval_12760 chr10 5017715 5018620 + 0 NA Intergenic Intergenic 18289 ENSMUSG00000093189.1 ENSMUSG00000093189 ENSMUST00000175448 Gm25694 ribozyme Interval_44831 chr13 48965696 48966072 + 0 NA intron (ENSMUSG00000038014.7, intron 1 of 17) protein_coding-intron (ENSMUSG00000038014.7, intron 1 of 17) 2133 ENSMUSG00000038014.7 ENSMUSG00000038014 ENSMUST00000060805 Fam120a protein_coding Interval_116946 chr4 118359743 118361033 + 0 NA promoter-TSS (ENSMUSG00000006395.16) polymorphic_pseudogene-promoter-TSS (ENSMUSG00000006395.16) 398 ENSMUSG00000006395.16 ENSMUSG00000006395 ENSMUST00000132882 Hyi polymorphic_pseudogene Interval_144708 chr7 27653762 27654785 + 0 NA exon (ENSMUSG00000007944.8, exon 1 of 3) protein_coding-exon (ENSMUSG00000007944.8, exon 1 of 3) 358 ENSMUSG00000007944.8 ENSMUSG00000007944 ENSMUST00000008088 Ttc9b protein_coding Interval_37549 chr12 69790314 69791333 + 0 NA promoter-TSS (ENSMUSG00000020990.5) protein_coding-promoter-TSS (ENSMUSG00000020990.5) 444 ENSMUSG00000020990.5 ENSMUSG00000020990 ENSMUST00000221646 Cdkl1 protein_coding Interval_117702 chr4 125651373 125652435 + 0 NA intron (ENSMUSG00000001985.9, intron 7 of 15) protein_coding-intron (ENSMUSG00000001985.9, intron 7 of 15) 147155 ENSMUSG00000094403.1 ENSMUSG00000094403 ENSMUST00000102081 Mir692-2 miRNA Interval_152731 chr7 136971464 136971709 + 0 NA intron (ENSMUSG00000054612.4, intron 2 of 4) protein_coding-intron (ENSMUSG00000054612.4, intron 2 of 4) 50645 ENSMUSG00000109721.1 ENSMUSG00000109721 ENSMUST00000210484 Gm45280 TEC Interval_99540 chr2 163042581 163043037 + 0 NA intron (ENSMUSG00000017858.12, intron 12 of 12) protein_coding-intron (ENSMUSG00000017858.12, intron 12 of 12) 20366 ENSMUSG00000017858.12 ENSMUSG00000017858 ENSMUST00000152201 Ift52 protein_coding Interval_27757 chr11 69805362 69805817 + 0 NA promoter-TSS (ENSMUSG00000089876.3) protein_coding-promoter-TSS (ENSMUSG00000089876.3) 35 ENSMUSG00000089876.3 ENSMUSG00000089876 ENSMUST00000051025 Tmem102 protein_coding Interval_170908 chr9 111939180 111939443 + 0 NA Intergenic Intergenic -20645 ENSMUSG00000111054.1 ENSMUSG00000111054 ENSMUST00000215688 4930545L08Rik lincRNA Interval_109869 chr3 149190687 149191317 + 0 NA Intergenic Intergenic -19269 ENSMUSG00000105357.1 ENSMUSG00000105357 ENSMUST00000195939 Gm42647 processed_pseudogene Interval_137933 chr6 83482740 83483034 + 0 NA intron (ENSMUSG00000014554.13, intron 3 of 4) protein_coding-intron (ENSMUSG00000014554.13, intron 4 of 6) 7533 ENSMUSG00000014554.13 ENSMUSG00000014554 ENSMUST00000147060 Dguok protein_coding Interval_45335 chr13 54520394 54521034 + 0 NA intron (ENSMUSG00000043183.18, intron 1 of 1) protein_coding-intron (ENSMUSG00000043183.18, intron 1 of 8) 16910 ENSMUSG00000043183.18 ENSMUSG00000043183 ENSMUST00000126506 Simc1 protein_coding Interval_105725 chr3 88928359 88928578 + 0 NA TTS (ENSMUSG00000068921.14) protein_coding-TTS (ENSMUSG00000068921.14) -14565 ENSMUSG00000068922.14 ENSMUSG00000068922 ENSMUST00000128988 Msto1 protein_coding Interval_112664 chr4 43927973 43928334 + 0 NA intron (ENSMUSG00000028476.13, intron 13 of 21) protein_coding-intron (ENSMUSG00000028476.13, intron 13 of 20) -12245 ENSMUSG00000028476.13 ENSMUSG00000028476 ENSMUST00000130415 Reck protein_coding Interval_54714 chr14 73518027 73518428 + 0 NA TTS (ENSMUSG00000033405.4) protein_coding-TTS (ENSMUSG00000033405.4) 6984 ENSMUSG00000033405.4 ENSMUSG00000033405 ENSMUST00000226903 Nudt15 protein_coding Interval_134969 chr6 34197156 34197437 + 0 NA Intergenic Intergenic 18064 ENSMUSG00000087613.1 ENSMUSG00000087613 ENSMUST00000145644 Gm13855 lincRNA Interval_125538 chr5 69488244 69490282 + 0 NA Intergenic Intergenic 15697 ENSMUSG00000106986.1 ENSMUSG00000106986 ENSMUST00000202469 Gm42887 TEC Interval_20486 chr10 117884272 117884573 + 0 NA Intergenic Intergenic -17707 ENSMUSG00000112711.1 ENSMUSG00000112711 ENSMUST00000217849 Gm32552 lincRNA Interval_63647 chr15 102524806 102525559 + 0 NA promoter-TSS (ENSMUSG00000023052.8) protein_coding-promoter-TSS (ENSMUSG00000023052.8) -240 ENSMUSG00000023052.8 ENSMUSG00000023052 ENSMUST00000184659 Npff protein_coding Interval_46770 chr13 70145725 70146006 + 0 NA Intergenic Intergenic -3935 ENSMUSG00000113573.1 ENSMUSG00000113573 ENSMUST00000222864 AU017674 lincRNA Interval_45559 chr13 55848255 55848664 + 0 NA intron (ENSMUSG00000114493.2, intron 2 of 5) antisense-intron (ENSMUSG00000114493.2, intron 2 of 5) -12267 ENSMUSG00000021506.7 ENSMUSG00000021506 ENSMUST00000173618 Pitx1 protein_coding Interval_150043 chr7 105349907 105350456 + 0 NA Intergenic Intergenic -7911 ENSMUSG00000043948.2 ENSMUSG00000043948 ENSMUST00000057528 Olfr691 protein_coding Interval_174471 chrX 152973237 152974848 + 0 NA Intergenic Intergenic -32427 ENSMUSG00000067215.5 ENSMUSG00000067215 ENSMUST00000095755 Usp51 protein_coding Interval_3181 chr1 54544156 54544511 + 0 NA intron (ENSMUSG00000073678.4, intron 3 of 11) protein_coding-intron (ENSMUSG00000073678.4, intron 3 of 26) 13294 ENSMUSG00000073678.4 ENSMUSG00000073678 ENSMUST00000189506 Pgap1 protein_coding Interval_18940 chr10 93275290 93276744 + 0 NA intron (ENSMUSG00000008398.16, intron 2 of 5) protein_coding-intron (ENSMUSG00000008398.16, intron 2 of 4) 34952 ENSMUSG00000008398.16 ENSMUSG00000008398 ENSMUST00000133365 Elk3 protein_coding Interval_36728 chr12 52618685 52619283 + 0 NA intron (ENSMUSG00000112412.1, intron 1 of 3) lincRNA-intron (ENSMUSG00000112412.1, intron 1 of 3) 11314 ENSMUSG00000112412.1 ENSMUSG00000112412 ENSMUST00000218346 Gm35239 lincRNA Interval_74647 chr17 54298222 54299073 + 0 NA promoter-TSS (ENSMUSG00000023945.7) protein_coding-promoter-TSS (ENSMUSG00000023945.7) -191 ENSMUSG00000023945.7 ENSMUSG00000023945 ENSMUST00000233758 Slc5a7 protein_coding Interval_120613 chr4 149701555 149701878 + 0 NA promoter-TSS (ENSMUSG00000039936.18) protein_coding-promoter-TSS (ENSMUSG00000039936.18) -27522 ENSMUSG00000039936.18 ENSMUSG00000039936 ENSMUST00000124510 Pik3cd protein_coding Interval_156854 chr8 61229964 61230720 + 0 NA intron (ENSMUSG00000031642.9, intron 2 of 10) protein_coding-intron (ENSMUSG00000031642.9, intron 2 of 11) -35694 ENSMUSG00000086681.1 ENSMUSG00000086681 ENSMUST00000129408 Gm16178 antisense Interval_114930 chr4 87135005 87135341 + 0 NA intron (ENSMUSG00000037996.17, intron 2 of 10) protein_coding-intron (ENSMUSG00000037996.17, intron 1 of 9) 95294 ENSMUSG00000037996.17 ENSMUSG00000037996 ENSMUST00000155361 Slc24a2 protein_coding Interval_69888 chr16 97921849 97923082 + 0 NA exon (ENSMUSG00000045975.8, exon 1 of 14) protein_coding-exon (ENSMUSG00000045975.8, exon 1 of 14) 141 ENSMUSG00000045975.8 ENSMUSG00000045975 ENSMUST00000231953 C2cd2 protein_coding Interval_45108 chr13 52275444 52276358 + 0 NA Intergenic Intergenic 95490 ENSMUSG00000113399.1 ENSMUSG00000113399 ENSMUST00000222876 Gm48199 lincRNA Interval_130699 chr5 129869058 129870338 + 0 NA TTS (ENSMUSG00000025537.12) protein_coding-TTS (ENSMUSG00000025537.12) 7249 ENSMUSG00000106840.1 ENSMUSG00000106840 ENSMUST00000201268 Gm42790 TEC Interval_48121 chr13 96406972 96407460 + 0 NA intron (ENSMUSG00000021671.9, intron 11 of 12) protein_coding-intron (ENSMUSG00000021671.9, intron 11 of 12) 2713 ENSMUSG00000021671.9 ENSMUSG00000021671 ENSMUST00000222792 Poc5 protein_coding Interval_19331 chr10 96797139 96797387 + 0 NA Intergenic Intergenic -1125 ENSMUSG00000112293.1 ENSMUSG00000112293 ENSMUST00000219071 Gm48509 processed_pseudogene Interval_51202 chr14 24897924 24898160 + 0 NA Intergenic Intergenic -11372 ENSMUSG00000072686.2 ENSMUSG00000072686 ENSMUST00000100826 Gm10398 lincRNA Interval_36447 chr12 44737037 44738357 + 0 NA Intergenic Intergenic -115035 ENSMUSG00000112823.1 ENSMUSG00000112823 ENSMUST00000217983 Gm6125 processed_pseudogene Interval_90093 chr2 27942556 27943296 + 0 NA intron (ENSMUSG00000026837.16, intron 4 of 65) protein_coding-intron (ENSMUSG00000026837.16, intron 4 of 65) -55874 ENSMUSG00000085766.1 ENSMUSG00000085766 ENSMUST00000154246 2810430I11Rik processed_transcript Interval_116992 chr4 118780354 118780726 + 0 NA Intergenic Intergenic 2046 ENSMUSG00000111159.1 ENSMUSG00000111159 ENSMUST00000077247 Olfr1337 protein_coding Interval_143976 chr7 18723887 18724655 + 0 NA intron (ENSMUSG00000044903.15, intron 3 of 4) protein_coding-intron (ENSMUSG00000044903.15, intron 3 of 4) 6181 ENSMUSG00000044903.15 ENSMUSG00000044903 ENSMUST00000108481 Psg22 protein_coding Interval_52173 chr14 38128730 38128902 + 0 NA Intergenic Intergenic 54705 ENSMUSG00000114450.1 ENSMUSG00000114450 ENSMUST00000224927 Gm18523 processed_pseudogene Interval_28061 chr11 72569133 72571074 + 0 NA Intergenic Intergenic 3227 ENSMUSG00000081675.1 ENSMUSG00000081675 ENSMUST00000120676 Gm12712 processed_pseudogene Interval_166291 chr9 58112455 58114642 + 0 NA intron (ENSMUSG00000037716.15, intron 4 of 4) protein_coding-intron (ENSMUSG00000037716.15, intron 4 of 4) -4267 ENSMUSG00000085753.1 ENSMUSG00000085753 ENSMUST00000131007 Gm16131 antisense Interval_61628 chr15 83034277 83035262 + 0 NA Intergenic Intergenic -11686 ENSMUSG00000058099.16 ENSMUSG00000058099 ENSMUST00000231204 Nfam1 protein_coding Interval_88014 chr19 57894221 57895203 + 0 NA intron (ENSMUSG00000054843.9, intron 26 of 28) protein_coding-intron (ENSMUSG00000054843.9, intron 26 of 28) -156455 ENSMUSG00000093757.1 ENSMUSG00000093757 ENSMUST00000176631 Mir5623 miRNA Interval_22866 chr11 16869265 16871674 + 0 NA intron (ENSMUSG00000020122.16, intron 7 of 15) protein_coding-intron (ENSMUSG00000020122.16, intron 7 of 27) -39767 ENSMUSG00000085091.1 ENSMUSG00000085091 ENSMUST00000150329 Egfros antisense Interval_108158 chr3 122050564 122051347 + 0 NA intron (ENSMUSG00000028125.14, intron 2 of 12) protein_coding-intron (ENSMUSG00000028125.14, intron 1 of 49) 27125 ENSMUSG00000104869.1 ENSMUSG00000104869 ENSMUST00000197868 Gm42544 TEC Interval_21384 chr10 128292343 128292627 + 0 NA TTS (ENSMUSG00000040033.16) protein_coding-TTS (ENSMUSG00000040033.16) 6267 ENSMUSG00000025383.2 ENSMUSG00000025383 ENSMUST00000218109 Il23a protein_coding Interval_60520 chr15 74607486 74607919 + 0 NA intron (ENSMUSG00000022603.9, intron 1 of 1) protein_coding-intron (ENSMUSG00000022603.9, intron 24 of 26) 526 ENSMUSG00000022603.9 ENSMUSG00000022603 ENSMUST00000175931 Mroh4 protein_coding Interval_52289 chr14 43953007 43954304 + 0 NA Intergenic Intergenic -8828 ENSMUSG00000053961.7 ENSMUSG00000053961 ENSMUST00000226667 Ang5 protein_coding Interval_53135 chr14 54650462 54651697 + 0 NA promoter-TSS (ENSMUSG00000022185.19) protein_coding-promoter-TSS (ENSMUSG00000022185.19) 568 ENSMUSG00000040840.7 ENSMUSG00000040840 ENSMUST00000167763 4930579G18Rik antisense Interval_87671 chr19 54135499 54136763 + 0 NA Intergenic Intergenic 51572 ENSMUSG00000117921.1 ENSMUSG00000117921 ENSMUST00000236398 Gm50186 lincRNA Interval_34045 chr11 120167185 120169910 + 0 NA Intergenic Intergenic -17235 ENSMUSG00000061306.16 ENSMUSG00000061306 ENSMUST00000152859 Slc38a10 protein_coding Interval_154225 chr8 13578717 13579207 + 0 NA promoter-TSS (ENSMUSG00000031453.16) protein_coding-promoter-TSS (ENSMUSG00000031453.16) -16501 ENSMUSG00000031452.15 ENSMUSG00000031452 ENSMUST00000132787 1700029H14Rik protein_coding Interval_96077 chr2 119636528 119637980 + 0 NA intron (ENSMUSG00000027306.15, intron 6 of 10) protein_coding-intron (ENSMUSG00000027306.15, intron 5 of 9) 6136 ENSMUSG00000064906.1 ENSMUSG00000064906 ENSMUST00000082972 n-R5s204 rRNA Interval_92149 chr2 54258436 54258933 + 0 NA Intergenic Intergenic 18115 ENSMUSG00000082096.1 ENSMUSG00000082096 ENSMUST00000121666 Gm13505 processed_pseudogene Interval_109084 chr3 135636121 135637899 + 0 NA intron (ENSMUSG00000028163.17, intron 4 of 22) protein_coding-intron (ENSMUSG00000028163.17, intron 6 of 24) 17556 ENSMUSG00000106149.1 ENSMUSG00000106149 ENSMUST00000196513 Gm43430 TEC Interval_171516 chr9 118985678 118985931 + 0 NA intron (ENSMUSG00000047409.13, intron 1 of 5) protein_coding-intron (ENSMUSG00000047409.13, intron 1 of 7) -45992 ENSMUSG00000065513.1 ENSMUSG00000065513 ENSMUST00000083579 Mir26a-1 miRNA Interval_108863 chr3 132817204 132817830 + 0 NA intron (ENSMUSG00000028030.12, intron 3 of 3) protein_coding-intron (ENSMUSG00000028030.12, intron 25 of 25) 11264 ENSMUSG00000105691.1 ENSMUSG00000105691 ENSMUST00000196989 Gm42876 TEC Interval_75807 chr17 71538796 71539029 + 0 NA intron (ENSMUSG00000079356.10, intron 4 of 5) transcribed_unprocessed_pseudogene-intron (ENSMUSG00000079356.10, intron 4 of 6) 12016 ENSMUSG00000079356.10 ENSMUSG00000079356 ENSMUST00000127676 Mettl4-ps1 transcribed_unprocessed_pseudogene Interval_78210 chr18 10148187 10148552 + 0 NA intron (ENSMUSG00000024290.9, intron 2 of 13) protein_coding-intron (ENSMUSG00000024290.9, intron 2 of 32) -2404 ENSMUSG00000058567.6 ENSMUSG00000058567 ENSMUST00000075609 Gm2531 pseudogene Interval_62569 chr15 94707349 94708062 + 0 NA intron (ENSMUSG00000063296.5, intron 2 of 2) protein_coding-intron (ENSMUSG00000063296.5, intron 2 of 7) -26319 ENSMUSG00000095169.1 ENSMUSG00000095169 ENSMUST00000103977 Gm25546 snoRNA Interval_40028 chr12 100578006 100578664 + 0 NA intron (ENSMUSG00000021180.9, intron 8 of 16) protein_coding-intron (ENSMUSG00000021180.9, intron 8 of 17) -4359 ENSMUSG00000113687.1 ENSMUSG00000113687 ENSMUST00000223531 Gm49703 TEC Interval_56420 chr14 118643026 118643699 + 0 NA intron (ENSMUSG00000032849.14, intron 3 of 29) protein_coding-intron (ENSMUSG00000032849.14, intron 4 of 30) -50890 ENSMUSG00000098433.1 ENSMUSG00000098433 ENSMUST00000184391 Mir6391 miRNA Interval_84831 chr19 17256430 17257083 + 0 NA promoter-TSS (ENSMUSG00000118367.1) lincRNA-promoter-TSS (ENSMUSG00000118367.1) -268 ENSMUSG00000118367.1 ENSMUSG00000118367 ENSMUST00000235384 Gm50277 lincRNA Interval_42405 chr13 13240626 13240816 + 0 NA Intergenic Intergenic -7828 ENSMUSG00000061724.5 ENSMUSG00000061724 ENSMUST00000074863 Gm2423 processed_pseudogene Interval_128065 chr5 110628241 110628809 + 0 NA Intergenic Intergenic 24855 ENSMUSG00000033294.11 ENSMUSG00000033294 ENSMUST00000199795 Noc4l protein_coding Interval_149411 chr7 98213329 98213539 + 0 NA TTS (ENSMUSG00000030760.14) protein_coding-TTS (ENSMUSG00000030760.14) 13454 ENSMUSG00000030760.14 ENSMUSG00000030760 ENSMUST00000137899 Acer3 protein_coding Interval_86176 chr19 37559349 37560839 + 0 NA intron (ENSMUSG00000053799.8, intron 1 of 21) protein_coding-intron (ENSMUSG00000053799.8, intron 1 of 21) 39215 ENSMUSG00000053799.8 ENSMUSG00000053799 ENSMUST00000238817 Exoc6 protein_coding Interval_147555 chr7 68250346 68250796 + 0 NA intron (ENSMUSG00000030553.3, intron 1 of 3) protein_coding-intron (ENSMUSG00000030553.3, intron 1 of 3) 13662 ENSMUSG00000030553.3 ENSMUSG00000030553 ENSMUST00000207874 Pgpep1l protein_coding Interval_71674 chr17 25310299 25310674 + 0 NA intron (ENSMUSG00000024171.5, intron 3 of 4) protein_coding-intron (ENSMUSG00000024171.5, intron 4 of 5) 1109 ENSMUSG00000024171.5 ENSMUSG00000024171 ENSMUST00000234259 Prss28 protein_coding Interval_126736 chr5 92402820 92403117 + 0 NA intron (ENSMUSG00000034842.16, intron 3 of 6) protein_coding-intron (ENSMUSG00000034842.16, intron 5 of 9) 21963 ENSMUSG00000034826.14 ENSMUSG00000034826 ENSMUST00000130156 Nup54 protein_coding Interval_1855 chr1 34158763 34159209 + 0 NA intron (ENSMUSG00000026131.20, intron 12 of 32) protein_coding-intron (ENSMUSG00000026131.20, intron 11 of 97) 19460 ENSMUSG00000096992.3 ENSMUSG00000096992 ENSMUST00000187268 Gm26788 processed_transcript Interval_145910 chr7 41618083 41618327 + 0 NA intron (ENSMUSG00000091474.2, intron 4 of 5) protein_coding-intron (ENSMUSG00000091474.2, intron 4 of 5) 6221 ENSMUSG00000091474.2 ENSMUSG00000091474 ENSMUST00000206757 2610021A01Rik protein_coding Interval_57026 chr15 4496382 4496580 + 0 NA intron (ENSMUSG00000049148.8, intron 2 of 2) protein_coding-intron (ENSMUSG00000049148.8, intron 1 of 2) 120990 ENSMUSG00000049148.8 ENSMUSG00000049148 ENSMUST00000061925 Plcxd3 protein_coding Interval_8047 chr1 135405989 135407423 + 0 NA intron (ENSMUSG00000041879.13, intron 3 of 7) protein_coding-intron (ENSMUSG00000041879.13, intron 8 of 23) 7480 ENSMUSG00000100620.1 ENSMUSG00000100620 ENSMUST00000187450 Gm28277 sense_intronic Interval_157559 chr8 71426137 71426353 + 0 NA Intergenic Intergenic 18554 ENSMUSG00000046295.13 ENSMUSG00000046295 ENSMUST00000136522 Ankle1 protein_coding Interval_14541 chr10 35151582 35151819 + 0 NA Intergenic Intergenic 9387 ENSMUSG00000111216.1 ENSMUSG00000111216 ENSMUST00000216575 Gm47044 processed_pseudogene Interval_113594 chr4 56897262 56898006 + 0 NA TTS (ENSMUSG00000099002.1) snoRNA-TTS (ENSMUSG00000099002.1) 123 ENSMUSG00000099002.1 ENSMUSG00000099002 ENSMUST00000103982 Gm25053 snoRNA Interval_110567 chr4 3952097 3952538 + 0 NA Intergenic Intergenic 5509 ENSMUSG00000042198.12 ENSMUSG00000042198 ENSMUST00000151519 Chchd7 protein_coding Interval_66062 chr16 31327709 31327891 + 0 NA TTS (ENSMUSG00000116973.1) lincRNA-TTS (ENSMUSG00000116973.1) 2565 ENSMUSG00000116973.1 ENSMUSG00000116973 ENSMUST00000231745 AV205837 lincRNA Interval_45 GL456212.1 67033 68087 + 0 NA NA NA NA NA Interval_31894 chr11 103666465 103666709 + 0 NA Intergenic Intergenic 17017 ENSMUSG00000046215.3 ENSMUSG00000046215 ENSMUST00000057870 Rprml protein_coding Interval_5758 chr1 91527832 91528328 + 0 NA TTS (ENSMUSG00000034292.13) protein_coding-TTS (ENSMUSG00000034292.13) -12652 ENSMUSG00000026311.16 ENSMUSG00000026311 ENSMUST00000188879 Asb1 protein_coding Interval_9913 chr1 164054044 164054358 + 0 NA intron (ENSMUSG00000026582.6, intron 10 of 13) protein_coding-intron (ENSMUSG00000026582.6, intron 10 of 13) 5967 ENSMUSG00000026582.6 ENSMUSG00000026582 ENSMUST00000027874 Sele protein_coding Interval_134003 chr6 17663224 17663412 + 0 NA intron (ENSMUSG00000015733.13, intron 2 of 3) protein_coding-intron (ENSMUSG00000015733.13, intron 8 of 9) 26283 ENSMUSG00000015733.13 ENSMUSG00000015733 ENSMUST00000142592 Capza2 protein_coding Interval_148671 chr7 83994132 83995541 + 0 NA intron (ENSMUSG00000052353.13, intron 5 of 23) protein_coding-intron (ENSMUSG00000052353.13, intron 5 of 28) 91666 ENSMUSG00000052353.13 ENSMUSG00000052353 ENSMUST00000147578 Cemip protein_coding Interval_121931 chr5 10084320 10084510 + 0 NA Intergenic Intergenic 17050 ENSMUSG00000091487.1 ENSMUSG00000091487 ENSMUST00000167028 Gm6586 unprocessed_pseudogene Interval_72744 chr17 31889308 31889694 + 0 NA Intergenic Intergenic 9677 ENSMUSG00000117562.2 ENSMUSG00000117562 ENSMUST00000234078 Gm50000 lincRNA Interval_89746 chr2 25192836 25193870 + 0 NA exon (ENSMUSG00000059555.6, exon 2 of 2) protein_coding-exon (ENSMUSG00000059555.6, exon 2 of 2) 3406 ENSMUSG00000059555.6 ENSMUSG00000059555 ENSMUST00000137920 Tor4a protein_coding Interval_162600 chr9 5922780 5923232 + 0 NA Intergenic Intergenic 29661 ENSMUSG00000110932.1 ENSMUSG00000110932 ENSMUST00000216024 Gm48640 processed_pseudogene Interval_160418 chr8 109339873 109340917 + 0 NA TTS (ENSMUSG00000110528.1) processed_pseudogene-TTS (ENSMUSG00000110528.1) 469 ENSMUSG00000110528.1 ENSMUSG00000110528 ENSMUST00000211890 Gm1943 processed_pseudogene Interval_54812 chr14 75371585 75371996 + 0 NA intron (ENSMUSG00000115615.1, intron 2 of 4) lincRNA-intron (ENSMUSG00000115615.1, intron 2 of 4) 28656 ENSMUSG00000115615.1 ENSMUSG00000115615 ENSMUST00000227736 Gm49200 lincRNA Interval_98391 chr2 152015657 152016154 + 0 NA Intergenic Intergenic 16040 ENSMUSG00000027463.14 ENSMUSG00000027463 ENSMUST00000109858 Slc52a3 protein_coding Interval_81660 chr18 62970668 62971594 + 0 NA Intergenic Intergenic -6716 ENSMUSG00000024581.13 ENSMUSG00000024581 ENSMUST00000236914 Napg protein_coding Interval_173568 chrX 99550197 99550459 + 0 NA Intergenic Intergenic -79593 ENSMUSG00000034403.16 ENSMUSG00000034403 ENSMUST00000113797 Pja1 protein_coding Interval_44324 chr13 43635294 43635501 + 0 NA intron (ENSMUSG00000044164.2, intron 1 of 1) protein_coding-intron (ENSMUSG00000044164.2, intron 1 of 1) 19414 ENSMUSG00000044164.2 ENSMUSG00000044164 ENSMUST00000161817 Rnf182 protein_coding Interval_100459 chr2 169124999 169125883 + 0 NA Intergenic Intergenic 18988 ENSMUSG00000086238.1 ENSMUSG00000086238 ENSMUST00000144607 Gm14258 lincRNA Interval_66108 chr16 31652239 31652576 + 0 NA Intergenic Intergenic -26834 ENSMUSG00000116781.1 ENSMUSG00000116781 ENSMUST00000232316 Gm49712 TEC Interval_2715 chr1 43784827 43785857 + 0 NA promoter-TSS (ENSMUSG00000090243.1) processed_pseudogene-promoter-TSS (ENSMUSG00000090243.1) -568 ENSMUSG00000090243.1 ENSMUSG00000090243 ENSMUST00000163003 Gm16103 processed_pseudogene Interval_148401 chr7 81028159 81028419 + 0 NA intron (ENSMUSG00000005621.11, intron 3 of 9) protein_coding-intron (ENSMUSG00000005621.11, intron 3 of 9) 4869 ENSMUSG00000005621.11 ENSMUSG00000005621 ENSMUST00000125137 Zfp592 protein_coding Interval_69253 chr16 91701126 91703536 + 0 NA intron (ENSMUSG00000058240.14, intron 4 of 6) protein_coding-intron (ENSMUSG00000058240.14, intron 6 of 12) 13433 ENSMUSG00000085169.2 ENSMUSG00000085169 ENSMUST00000156242 Gm10785 antisense Interval_126501 chr5 89217309 89218068 + 0 NA intron (ENSMUSG00000060961.16, intron 21 of 25) protein_coding-intron (ENSMUSG00000060961.16, intron 20 of 24) 217940 ENSMUSG00000035540.12 ENSMUSG00000035540 ENSMUST00000200534 Gc protein_coding Interval_47470 chr13 84922526 84922741 + 0 NA Intergenic Intergenic 51684 ENSMUSG00000114338.1 ENSMUSG00000114338 ENSMUST00000225386 Gm4059 processed_pseudogene Interval_145267 chr7 31051110 31053520 + 0 NA promoter-TSS (ENSMUSG00000036578.7) protein_coding-promoter-TSS (ENSMUSG00000036578.7) -912 ENSMUSG00000036578.7 ENSMUSG00000036578 ENSMUST00000073892 Fxyd7 protein_coding Interval_129532 chr5 120746219 120746595 + 0 NA exon (ENSMUSG00000107075.1, exon 1 of 1) TEC-exon (ENSMUSG00000107075.1, exon 1 of 1) 371 ENSMUSG00000107075.1 ENSMUSG00000107075 ENSMUST00000201095 Gm43068 TEC Interval_130974 chr5 134345407 134345943 + 0 NA Intergenic Intergenic 19221 ENSMUSG00000093311.1 ENSMUSG00000093311 ENSMUST00000175570 Mir3965 miRNA Interval_137669 chr6 78395250 78395727 + 0 NA promoter-TSS (ENSMUSG00000023140.4) protein_coding-promoter-TSS (ENSMUSG00000023140.4) -135 ENSMUSG00000023140.4 ENSMUSG00000023140 ENSMUST00000023906 Reg2 protein_coding Interval_104090 chr3 58525070 58526524 + 0 NA promoter-TSS (ENSMUSG00000027808.8) protein_coding-promoter-TSS (ENSMUSG00000027808.8) 95 ENSMUSG00000027808.8 ENSMUSG00000027808 ENSMUST00000029385 Serp1 protein_coding Interval_114419 chr4 75860297 75860507 + 0 NA Intergenic Intergenic 5884 ENSMUSG00000084253.1 ENSMUSG00000084253 ENSMUST00000118109 Gm11256 processed_pseudogene Interval_116136 chr4 108025357 108026564 + 0 NA intron (ENSMUSG00000028600.15, intron 4 of 11) protein_coding-intron (ENSMUSG00000028600.15, intron 3 of 11) 5026 ENSMUSG00000028600.15 ENSMUSG00000028600 ENSMUST00000124265 Podn protein_coding Interval_69550 chr16 94176689 94176945 + 0 NA intron (ENSMUSG00000115246.1, intron 1 of 1) protein_coding-intron (ENSMUSG00000040820.16, intron 5 of 9) 2276 ENSMUSG00000115246.1 ENSMUSG00000115246 ENSMUST00000228762 Gm48984 antisense Interval_42985 chr13 22168365 22168629 + 0 NA Intergenic Intergenic -2690 ENSMUSG00000083319.1 ENSMUSG00000083319 ENSMUST00000121910 Gm11284 processed_pseudogene Interval_160771 chr8 112066098 112066377 + 0 NA Intergenic Intergenic 3732 ENSMUSG00000065700.1 ENSMUSG00000065700 ENSMUST00000083766 Gm22827 snRNA Interval_100652 chr2 170788107 170788664 + 0 NA intron (ENSMUSG00000027560.4, intron 1 of 7) protein_coding-intron (ENSMUSG00000027560.4, intron 1 of 7) 56578 ENSMUSG00000027560.4 ENSMUSG00000027560 ENSMUST00000029075 Dok5 protein_coding Interval_97022 chr2 130589274 130590582 + 0 NA TTS (ENSMUSG00000027300.10) protein_coding-TTS (ENSMUSG00000027300.10) -7374 ENSMUSG00000037727.6 ENSMUSG00000037727 ENSMUST00000046001 Avp protein_coding Interval_154486 chr8 18621523 18622190 + 0 NA intron (ENSMUSG00000039842.15, intron 3 of 11) protein_coding-intron (ENSMUSG00000039842.15, intron 3 of 13) -7747 ENSMUSG00000077287.1 ENSMUSG00000077287 ENSMUST00000104099 Gm25763 snoRNA Interval_168074 chr9 75905656 75905956 + 0 NA intron (ENSMUSG00000097836.1, intron 4 of 4) antisense-intron (ENSMUSG00000097836.1, intron 4 of 4) -5616 ENSMUSG00000105435.1 ENSMUSG00000105435 ENSMUST00000200417 Gm44355 miRNA Interval_113693 chr4 57681435 57682229 + 0 NA intron (ENSMUSG00000089945.13, intron 2 of 8) protein_coding-intron (ENSMUSG00000089945.13, intron 3 of 10) 44009 ENSMUSG00000089945.13 ENSMUSG00000089945 ENSMUST00000150412 Pakap protein_coding Interval_152667 chr7 136008040 136008541 + 0 NA Intergenic Intergenic 55492 ENSMUSG00000098031.1 ENSMUSG00000098031 ENSMUST00000183000 Gm9341 processed_pseudogene Interval_87649 chr19 53993914 53994523 + 0 NA intron (ENSMUSG00000117981.1, intron 1 of 3) protein_coding-intron (ENSMUSG00000024976.14, intron 2 of 8) 6045 ENSMUSG00000024976.14 ENSMUSG00000024976 ENSMUST00000237801 Shoc2 protein_coding Interval_19213 chr10 95538694 95539319 + 0 NA intron (ENSMUSG00000074781.5, intron 1 of 2) protein_coding-intron (ENSMUSG00000074781.5, intron 1 of 3) 20315 ENSMUSG00000092867.1 ENSMUSG00000092867 ENSMUST00000175126 Mir3058 miRNA Interval_52791 chr14 50293475 50293752 + 0 NA Intergenic Intergenic 7909 ENSMUSG00000090874.2 ENSMUSG00000090874 ENSMUST00000163469 Olfr733 protein_coding Interval_94480 chr2 91526440 91527544 + 0 NA promoter-TSS (ENSMUSG00000040549.16) protein_coding-promoter-TSS (ENSMUSG00000040549.16) -3108 ENSMUSG00000081834.1 ENSMUSG00000081834 ENSMUST00000117149 Gm13770 processed_pseudogene Interval_138109 chr6 85237214 85237613 + 0 NA intron (ENSMUSG00000033720.12, intron 2 of 4) protein_coding-intron (ENSMUSG00000033720.12, intron 10 of 13) 43894 ENSMUSG00000033726.8 ENSMUSG00000033726 ENSMUST00000173919 Emx1 protein_coding Interval_107273 chr3 105151385 105152227 + 0 NA Intergenic Intergenic 84962 ENSMUSG00000051788.4 ENSMUSG00000051788 ENSMUST00000070584 4930564D02Rik protein_coding Interval_131761 chr5 139720009 139720553 + 0 NA intron (ENSMUSG00000036718.17, intron 2 of 16) protein_coding-intron (ENSMUSG00000036718.17, intron 2 of 16) 12553 ENSMUSG00000036718.17 ENSMUSG00000036718 ENSMUST00000165645 Micall2 protein_coding Interval_24900 chr11 41006336 41006552 + 0 NA Intergenic Intergenic 28679 ENSMUSG00000065916.1 ENSMUSG00000065916 ENSMUST00000083982 Gm24446 snRNA Interval_114983 chr4 88047299 88047972 + 0 NA Intergenic Intergenic 3831 ENSMUSG00000081530.1 ENSMUSG00000081530 ENSMUST00000119144 Gm12646 processed_pseudogene Interval_41439 chr12 113944182 113944407 + 0 NA Intergenic Intergenic 4502 ENSMUSG00000076655.2 ENSMUSG00000076655 ENSMUST00000103464 Ighv4-1 IG_V_gene Interval_152241 chr7 130876645 130876833 + 0 NA intron (ENSMUSG00000040268.17, intron 1 of 4) protein_coding-intron (ENSMUSG00000040268.17, intron 1 of 9) -5613 ENSMUSG00000040268.17 ENSMUSG00000040268 ENSMUST00000135359 Plekha1 protein_coding Interval_108209 chr3 122487925 122488939 + 0 NA intron (ENSMUSG00000028121.8, intron 1 of 2) protein_coding-intron (ENSMUSG00000028121.8, intron 3 of 11) 23705 ENSMUSG00000087743.1 ENSMUSG00000087743 ENSMUST00000157118 Gm25153 snRNA Interval_106090 chr3 92917151 92917631 + 0 NA Intergenic Intergenic 8839 ENSMUSG00000054325.5 ENSMUSG00000054325 ENSMUST00000067318 Lce3a protein_coding Interval_114908 chr4 86862395 86863003 + 0 NA Intergenic Intergenic -5354 ENSMUSG00000028495.14 ENSMUSG00000028495 ENSMUST00000130001 Rps6 protein_coding Interval_11099 chr1 179355070 179355295 + 0 NA intron (ENSMUSG00000055067.15, intron 5 of 11) protein_coding-intron (ENSMUSG00000055067.15, intron 5 of 11) 162823 ENSMUSG00000055067.15 ENSMUSG00000055067 ENSMUST00000194237 Smyd3 protein_coding Interval_132988 chr5 149118002 149119673 + 0 NA TTS (ENSMUSG00000097191.2) lincRNA-TTS (ENSMUSG00000097191.2) 4575 ENSMUSG00000097191.2 ENSMUSG00000097191 ENSMUST00000200718 Mm2pr lincRNA Interval_107696 chr3 111186337 111186776 + 0 NA Intergenic Intergenic 78056 ENSMUSG00000106487.1 ENSMUSG00000106487 ENSMUST00000199816 Gm43407 processed_pseudogene Interval_50802 chr14 19929724 19930013 + 0 NA intron (ENSMUSG00000043004.13, intron 3 of 5) protein_coding-intron (ENSMUSG00000043004.13, intron 3 of 5) 47316 ENSMUSG00000043004.13 ENSMUSG00000043004 ENSMUST00000161247 Gng2 protein_coding Interval_73915 chr17 45464644 45465231 + 0 NA promoter-TSS (ENSMUSG00000061242.6) processed_pseudogene-promoter-TSS (ENSMUSG00000061242.6) -851 ENSMUSG00000061242.6 ENSMUSG00000061242 ENSMUST00000095268 Gm9104 processed_pseudogene Interval_61858 chr15 84714502 84715366 + 0 NA exon (ENSMUSG00000116396.1, exon 3 of 3) lincRNA-exon (ENSMUSG00000116396.1, exon 3 of 3) -5118 ENSMUSG00000078954.9 ENSMUSG00000078954 ENSMUST00000169075 Arhgap8 protein_coding Interval_35194 chr12 17942953 17943150 + 0 NA intron (ENSMUSG00000113642.1, intron 1 of 1) transcribed_unprocessed_pseudogene-intron (ENSMUSG00000113642.1, intron 1 of 1) 9887 ENSMUSG00000113536.1 ENSMUSG00000113536 ENSMUST00000221062 Gm49327 transcribed_unprocessed_pseudogene Interval_125951 chr5 76170451 76170769 + 0 NA Intergenic Intergenic -26015 ENSMUSG00000083152.1 ENSMUSG00000083152 ENSMUST00000119356 Apc-ps1 transcribed_processed_pseudogene Interval_43519 chr13 32535254 32535453 + 0 NA intron (ENSMUSG00000113449.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000113449.1, intron 1 of 1) 1062 ENSMUSG00000113449.1 ENSMUSG00000113449 ENSMUST00000221163 Gm48073 lincRNA Interval_135976 chr6 49208768 49209265 + 0 NA intron (ENSMUSG00000029814.10, intron 2 of 3) protein_coding-intron (ENSMUSG00000029814.10, intron 2 of 14) 36257 ENSMUSG00000107727.1 ENSMUSG00000107727 ENSMUST00000203553 Gm18010 processed_pseudogene Interval_16058 chr10 60407520 60408330 + 0 NA intron (ENSMUSG00000012819.15, intron 24 of 65) protein_coding-intron (ENSMUSG00000012819.15, intron 24 of 66) 8021 ENSMUSG00000090439.3 ENSMUSG00000090439 ENSMUST00000218360 Gm17455 protein_coding Interval_140380 chr6 117687080 117687269 + 0 NA intron (ENSMUSG00000099869.6, intron 3 of 3) lincRNA-intron (ENSMUSG00000099869.6, intron 3 of 3) -29299 ENSMUSG00000104222.1 ENSMUSG00000104222 ENSMUST00000195277 Gm7292 lincRNA Interval_63562 chr15 102052120 102053237 + 0 NA Intergenic Intergenic -21186 ENSMUSG00000058655.9 ENSMUSG00000058655 ENSMUST00000229254 Eif4b protein_coding Interval_75317 chr17 65847997 65848214 + 0 NA TTS (ENSMUSG00000024096.17) protein_coding-TTS (ENSMUSG00000024096.17) 19157 ENSMUSG00000061950.17 ENSMUSG00000061950 ENSMUST00000162703 Ppp4r1 protein_coding Interval_104894 chr3 78671345 78671528 + 0 NA Intergenic Intergenic -87183 ENSMUSG00000102341.1 ENSMUSG00000102341 ENSMUST00000194471 Gm18952 processed_pseudogene Interval_159401 chr8 94330480 94332048 + 0 NA intron (ENSMUSG00000031766.4, intron 2 of 23) protein_coding-intron (ENSMUSG00000031766.4, intron 2 of 24) 6953 ENSMUSG00000065512.3 ENSMUSG00000065512 ENSMUST00000083578 Mir138-2 miRNA Interval_116318 chr4 109695768 109696674 + 0 NA intron (ENSMUSG00000010517.7, intron 1 of 18) protein_coding-intron (ENSMUSG00000010517.7, intron 1 of 18) -29032 ENSMUSG00000028551.14 ENSMUSG00000028551 ENSMUST00000097921 Cdkn2c protein_coding Interval_145884 chr7 41392819 41394018 + 0 NA promoter-TSS (ENSMUSG00000056383.10) protein_coding-promoter-TSS (ENSMUSG00000056383.10) -106 ENSMUSG00000056383.10 ENSMUSG00000056383 ENSMUST00000206430 AI987944 protein_coding Interval_76001 chr17 74281500 74282102 + 0 NA intron (ENSMUSG00000058704.9, intron 1 of 8) protein_coding-intron (ENSMUSG00000058704.9, intron 1 of 8) 13062 ENSMUSG00000058704.9 ENSMUSG00000058704 ENSMUST00000232861 Memo1 protein_coding Interval_46903 chr13 73305623 73306933 + 0 NA Intergenic Intergenic -11566 ENSMUSG00000066407.3 ENSMUSG00000066407 ENSMUST00000085163 Gm10263 processed_pseudogene Interval_91617 chr2 44636535 44636900 + 0 NA intron (ENSMUSG00000036890.13, intron 3 of 5) protein_coding-intron (ENSMUSG00000036890.13, intron 2 of 7) -151548 ENSMUSG00000083849.1 ENSMUSG00000083849 ENSMUST00000121620 Gm13477 processed_pseudogene Interval_6786 chr1 119473604 119473845 + 0 NA intron (ENSMUSG00000004451.14, intron 2 of 2) protein_coding-intron (ENSMUSG00000004451.14, intron 4 of 4) -25753 ENSMUSG00000101437.1 ENSMUSG00000101437 ENSMUST00000190805 Gm29454 processed_pseudogene Interval_6393 chr1 106828035 106828214 + 0 NA Intergenic Intergenic -33050 ENSMUSG00000067006.12 ENSMUSG00000067006 ENSMUST00000112729 Serpinb5 protein_coding Interval_67733 chr16 56581158 56581400 + 0 NA intron (ENSMUSG00000035258.15, intron 6 of 35) protein_coding-intron (ENSMUSG00000035258.15, intron 6 of 39) 103379 ENSMUSG00000035258.15 ENSMUSG00000035258 ENSMUST00000096012 Abi3bp protein_coding Interval_109673 chr3 145913045 145914543 + 0 NA Intergenic Intergenic -10563 ENSMUSG00000028191.11 ENSMUSG00000028191 ENSMUST00000198122 Bcl10 protein_coding Interval_5056 chr1 84722320 84722974 + 0 NA exon (ENSMUSG00000026219.14, exon 41 of 41) protein_coding-exon (ENSMUSG00000026219.14, exon 41 of 41) 6229 ENSMUSG00000026219.14 ENSMUSG00000026219 ENSMUST00000187818 Trip12 protein_coding Interval_40892 chr12 109152216 109152408 + 0 NA Intergenic Intergenic 54085 ENSMUSG00000113306.1 ENSMUSG00000113306 ENSMUST00000223357 Mif-ps7 processed_pseudogene Interval_33973 chr11 119769386 119770545 + 0 NA intron (ENSMUSG00000025583.15, intron 6 of 32) protein_coding-intron (ENSMUSG00000025583.15, intron 6 of 33) 23564 ENSMUSG00000088670.1 ENSMUSG00000088670 ENSMUST00000158045 Gm23663 snoRNA Interval_43619 chr13 34150283 34150485 + 0 NA Intergenic Intergenic -12580 ENSMUSG00000071451.10 ENSMUSG00000071451 ENSMUST00000147632 Psmg4 protein_coding Interval_34140 chr11 120862617 120863141 + 0 NA intron (ENSMUSG00000048445.6, intron 3 of 5) protein_coding-intron (ENSMUSG00000048445.6, intron 16 of 18) 10792 ENSMUSG00000048445.6 ENSMUSG00000048445 ENSMUST00000143895 Ccdc57 protein_coding Interval_83858 chr19 5136758 5137376 + 0 NA intron (ENSMUSG00000024855.10, intron 22 of 22) protein_coding-intron (ENSMUSG00000024855.10, intron 21 of 23) -4095 ENSMUSG00000117729.1 ENSMUSG00000117729 ENSMUST00000237684 Gm5242 processed_pseudogene Interval_65507 chr16 22894086 22894877 + 0 NA promoter-TSS (ENSMUSG00000116831.1) antisense-promoter-TSS (ENSMUSG00000116831.1) -95 ENSMUSG00000116831.1 ENSMUSG00000116831 ENSMUST00000231692 Gm30505 antisense Interval_63743 chr15 103192031 103193338 + 0 NA exon (ENSMUSG00000009575.14, exon 5 of 5) protein_coding-exon (ENSMUSG00000009575.14, exon 5 of 5) 22682 ENSMUSG00000009575.14 ENSMUSG00000009575 ENSMUST00000127191 Cbx5 protein_coding Interval_46915 chr13 73378077 73378493 + 0 NA Intergenic Intergenic -30901 ENSMUSG00000113346.2 ENSMUSG00000113346 ENSMUST00000223470 Eprn lincRNA Interval_168598 chr9 84023863 84025450 + 0 NA exon (ENSMUSG00000111757.1, exon 1 of 3) antisense-exon (ENSMUSG00000111757.1, exon 1 of 3) 161 ENSMUSG00000111757.1 ENSMUSG00000111757 ENSMUST00000215223 Gm46124 antisense Interval_165154 chr9 44868496 44868898 + 0 NA intron (ENSMUSG00000002028.13, intron 1 of 3) protein_coding-intron (ENSMUSG00000002028.13, intron 1 of 35) -9522 ENSMUSG00000111017.1 ENSMUSG00000111017 ENSMUST00000213541 Gm48314 TEC Interval_10697 chr1 173321758 173322317 + 0 NA Intergenic Intergenic 11713 ENSMUSG00000037872.5 ENSMUSG00000037872 ENSMUST00000194046 Ackr1 protein_coding Interval_113174 chr4 48897876 48898313 + 0 NA promoter-TSS (ENSMUSG00000084787.1) lincRNA-promoter-TSS (ENSMUSG00000084787.1) -499 ENSMUSG00000084787.1 ENSMUSG00000084787 ENSMUST00000131099 Gm12436 lincRNA Interval_62319 chr15 90092214 90092482 + 0 NA Intergenic Intergenic 17837 ENSMUSG00000116231.1 ENSMUSG00000116231 ENSMUST00000230688 Gm36330 lincRNA Interval_107431 chr3 107612867 107613497 + 0 NA exon (ENSMUSG00000014601.13, exon 21 of 21) protein_coding-exon (ENSMUSG00000014601.13, exon 21 of 21) 899 ENSMUSG00000014601.13 ENSMUSG00000014601 ENSMUST00000198424 Strip1 protein_coding Interval_27613 chr11 69053332 69054262 + 0 NA Intergenic Intergenic 5269 ENSMUSG00000020897.12 ENSMUSG00000020897 ENSMUST00000140531 Aurkb protein_coding Interval_144439 chr7 25179038 25180156 + 0 NA intron (ENSMUSG00000008496.19, intron 1 of 4) protein_coding-intron (ENSMUSG00000008496.19, intron 1 of 4) 24528 ENSMUSG00000074274.7 ENSMUSG00000074274 ENSMUST00000186424 D930028M14Rik lincRNA Interval_32017 chr11 104479468 104479799 + 0 NA Intergenic Intergenic -11642 ENSMUSG00000018412.16 ENSMUSG00000018412 ENSMUST00000134266 Kansl1 protein_coding Interval_118282 chr4 130022448 130022662 + 0 NA TTS (ENSMUSG00000028782.14) protein_coding-TTS (ENSMUSG00000028782.14) 5949 ENSMUSG00000085517.7 ENSMUSG00000085517 ENSMUST00000156271 Gm12963 antisense Interval_80216 chr18 38337826 38339434 + 0 NA exon (ENSMUSG00000052102.15, exon 1 of 1) protein_coding-exon (ENSMUSG00000052102.15, exon 1 of 1) 350 ENSMUSG00000052102.15 ENSMUSG00000052102 ENSMUST00000237313 Gnpda1 protein_coding Interval_127523 chr5 104827867 104828253 + 0 NA intron (ENSMUSG00000072774.10, intron 1 of 4) protein_coding-intron (ENSMUSG00000072774.10, intron 1 of 4) 31733 ENSMUSG00000072774.10 ENSMUSG00000072774 ENSMUST00000191135 Zfp951 protein_coding Interval_50585 chr14 16072315 16073004 + 0 NA Intergenic Intergenic -35462 ENSMUSG00000114390.1 ENSMUSG00000114390 ENSMUST00000223757 1700062C10Rik lincRNA Interval_37934 chr12 73129171 73129390 + 0 NA intron (ENSMUSG00000021103.12, intron 1 of 6) protein_coding-intron (ENSMUSG00000021103.12, intron 1 of 7) 5563 ENSMUSG00000021103.12 ENSMUSG00000021103 ENSMUST00000021523 Mnat1 protein_coding Interval_92695 chr2 62708746 62708974 + 0 NA intron (ENSMUSG00000059742.10, intron 14 of 15) protein_coding-intron (ENSMUSG00000059742.10, intron 14 of 15) 22662 ENSMUSG00000026893.4 ENSMUSG00000026893 ENSMUST00000148083 Gca protein_coding Interval_101240 chr2 179766565 179768075 + 0 NA intron (ENSMUSG00000000305.12, intron 2 of 2) protein_coding-intron (ENSMUSG00000000305.12, intron 2 of 15) -9843 ENSMUSG00000000305.12 ENSMUSG00000000305 ENSMUST00000098996 Cdh4 protein_coding Interval_141103 chr6 125003742 125004029 + 0 NA TTS (ENSMUSG00000030329.11) protein_coding-TTS (ENSMUSG00000030329.11) 5448 ENSMUSG00000030329.11 ENSMUSG00000030329 ENSMUST00000160666 Pianp protein_coding Interval_84208 chr19 8770698 8771577 + 0 NA TTS (ENSMUSG00000010097.15) protein_coding-TTS (ENSMUSG00000010097.15) 141 ENSMUSG00000117924.1 ENSMUSG00000117924 ENSMUST00000010248 Tmem223 protein_coding Interval_166226 chr9 57619025 57620024 + 0 NA intron (ENSMUSG00000056271.13, intron 1 of 12) protein_coding-intron (ENSMUSG00000056271.13, intron 1 of 10) 1250 ENSMUSG00000056271.13 ENSMUSG00000056271 ENSMUST00000044937 Lman1l protein_coding Interval_146553 chr7 46795227 46796599 + 0 NA promoter-TSS (ENSMUSG00000006599.13) protein_coding-promoter-TSS (ENSMUSG00000006599.13) -201 ENSMUSG00000006599.13 ENSMUSG00000006599 ENSMUST00000144708 Gtf2h1 protein_coding Interval_71855 chr17 26547686 26550033 + 0 NA intron (ENSMUSG00000024190.7, intron 3 of 5) protein_coding-intron (ENSMUSG00000024190.7, intron 3 of 5) 6099 ENSMUSG00000068604.4 ENSMUSG00000068604 ENSMUST00000090257 Gm8225 processed_pseudogene Interval_90552 chr2 31109506 31110740 + 0 NA intron (ENSMUSG00000075415.13, intron 1 of 5) protein_coding-intron (ENSMUSG00000075415.13, intron 1 of 13) 6189 ENSMUSG00000075415.13 ENSMUSG00000075415 ENSMUST00000136085 Fnbp1 protein_coding Interval_46387 chr13 64407539 64407801 + 0 NA Intergenic Intergenic 24732 ENSMUSG00000113696.1 ENSMUSG00000113696 ENSMUST00000221465 1700015C15Rik antisense Interval_119679 chr4 139175267 139175559 + 0 NA TTS (ENSMUSG00000073739.3) antisense-TTS (ENSMUSG00000073739.3) 5242 ENSMUSG00000073739.3 ENSMUSG00000073739 ENSMUST00000097827 Gm16287 antisense Interval_26735 chr11 60088742 60089415 + 0 NA Intergenic Intergenic -10469 ENSMUSG00000098502.1 ENSMUSG00000098502 ENSMUST00000183502 Gm27511 misc_RNA Interval_66967 chr16 38882280 38882887 + 0 NA intron (ENSMUSG00000086175.2, intron 5 of 5) antisense-intron (ENSMUSG00000086175.2, intron 5 of 5) -19925 ENSMUSG00000022790.14 ENSMUSG00000022790 ENSMUST00000210471 Igsf11 protein_coding Interval_74212 chr17 47501682 47502912 + 0 NA promoter-TSS (ENSMUSG00000023980.7) protein_coding-promoter-TSS (ENSMUSG00000023980.7) -25 ENSMUSG00000023980.7 ENSMUSG00000023980 ENSMUST00000233675 Taf8 protein_coding Interval_98527 chr2 153009170 153010198 + 0 NA TTS (ENSMUSG00000027472.14) protein_coding-TTS (ENSMUSG00000027472.14) 5662 ENSMUSG00000027472.14 ENSMUSG00000027472 ENSMUST00000140325 Pdrg1 protein_coding Interval_558 chr1 7312256 7313083 + 0 NA Intergenic Intergenic -2782 ENSMUSG00000102768.1 ENSMUSG00000102768 ENSMUST00000192649 Gm19002 processed_pseudogene Interval_98365 chr2 151862101 151862681 + 0 NA intron (ENSMUSG00000032852.3, intron 1 of 4) protein_coding-intron (ENSMUSG00000032852.3, intron 1 of 4) 4569 ENSMUSG00000086620.1 ENSMUSG00000086620 ENSMUST00000152229 Rspo4os antisense Interval_164017 chr9 30936772 30937292 + 0 NA Intergenic Intergenic -6426 ENSMUSG00000031994.13 ENSMUSG00000031994 ENSMUST00000163037 Adamts8 protein_coding Interval_159345 chr8 93946571 93946811 + 0 NA intron (ENSMUSG00000031748.16, intron 2 of 4) protein_coding-intron (ENSMUSG00000031748.16, intron 4 of 8) -12755 ENSMUSG00000093005.1 ENSMUSG00000093005 ENSMUST00000175264 Gm24159 miRNA Interval_103872 chr3 53982590 53982912 + 0 NA Intergenic Intergenic -38413 ENSMUSG00000103155.1 ENSMUSG00000103155 ENSMUST00000194076 Gm8109 processed_pseudogene Interval_22377 chr11 9257781 9258181 + 0 NA intron (ENSMUSG00000004668.14, intron 6 of 61) protein_coding-intron (ENSMUSG00000004668.14, intron 6 of 61) 64530 ENSMUSG00000004668.14 ENSMUSG00000004668 ENSMUST00000151522 Abca13 protein_coding Interval_161612 chr8 121568332 121568667 + 0 NA intron (ENSMUSG00000052934.14, intron 1 of 4) protein_coding-intron (ENSMUSG00000052934.14, intron 1 of 8) 10248 ENSMUSG00000052934.14 ENSMUSG00000052934 ENSMUST00000181663 Fbxo31 protein_coding Interval_25306 chr11 46220733 46221073 + 0 NA intron (ENSMUSG00000020340.16, intron 26 of 30) protein_coding-intron (ENSMUSG00000020340.16, intron 26 of 30) -14628 ENSMUSG00000048721.2 ENSMUSG00000048721 ENSMUST00000060185 Fndc9 protein_coding Interval_112544 chr4 43009893 43011794 + 0 NA promoter-TSS (ENSMUSG00000028453.10) protein_coding-promoter-TSS (ENSMUSG00000028453.10) -6911 ENSMUSG00000028453.10 ENSMUSG00000028453 ENSMUST00000132273 Fancg protein_coding Interval_56677 chr14 121324122 121324847 + 0 NA intron (ENSMUSG00000063410.8, intron 2 of 4) protein_coding-intron (ENSMUSG00000063410.8, intron 2 of 10) 55527 ENSMUSG00000063410.8 ENSMUSG00000063410 ENSMUST00000226158 Stk24 protein_coding Interval_71871 chr17 26638598 26639302 + 0 NA TTS (ENSMUSG00000001576.15) protein_coding-TTS (ENSMUSG00000001576.15) -13850 ENSMUSG00000091078.1 ENSMUSG00000091078 ENSMUST00000165911 Gm17218 antisense Interval_119347 chr4 137058209 137059384 + 0 NA Intergenic Intergenic 33112 ENSMUSG00000077624.1 ENSMUSG00000077624 ENSMUST00000104436 Gm23834 snoRNA Interval_138769 chr6 91720510 91721736 + 0 NA intron (ENSMUSG00000030096.8, intron 3 of 4) protein_coding-intron (ENSMUSG00000030096.8, intron 2 of 14) -7845 ENSMUSG00000108574.1 ENSMUSG00000108574 ENSMUST00000205549 Gm44981 TEC Interval_15062 chr10 42285877 42286143 + 0 NA Intergenic Intergenic -23765 ENSMUSG00000088165.1 ENSMUSG00000088165 ENSMUST00000157540 Gm23533 misc_RNA Interval_62649 chr15 95954271 95954879 + 0 NA intron (ENSMUSG00000064210.7, intron 16 of 20) protein_coding-intron (ENSMUSG00000064210.7, intron 15 of 19) 39554 ENSMUSG00000115049.1 ENSMUSG00000115049 ENSMUST00000227616 Gm49172 processed_transcript Interval_34042 chr11 120158926 120159222 + 0 NA Intergenic Intergenic -7762 ENSMUSG00000061306.16 ENSMUSG00000061306 ENSMUST00000152859 Slc38a10 protein_coding Interval_106536 chr3 97078398 97078700 + 0 NA intron (ENSMUSG00000104766.1, intron 1 of 3) antisense-intron (ENSMUSG00000104766.1, intron 1 of 3) 14236 ENSMUSG00000104766.1 ENSMUSG00000104766 ENSMUST00000197696 4930573H18Rik antisense Interval_143135 chr7 3594467 3595620 + 0 NA intron (ENSMUSG00000108644.1, intron 2 of 3) lincRNA-intron (ENSMUSG00000108644.1, intron 2 of 3) 5879 ENSMUSG00000095674.1 ENSMUSG00000095674 ENSMUST00000179750 Gm25100 miRNA Interval_69462 chr16 93681917 93683819 + 0 NA promoter-TSS (ENSMUSG00000022947.8) protein_coding-promoter-TSS (ENSMUSG00000022947.8) -391 ENSMUSG00000022947.8 ENSMUSG00000022947 ENSMUST00000231302 Cbr3 protein_coding Interval_97154 chr2 131812512 131813219 + 0 NA Intergenic Intergenic 32730 ENSMUSG00000081422.1 ENSMUSG00000081422 ENSMUST00000119484 Gm14282 transcribed_processed_pseudogene Interval_170729 chr9 110369056 110369400 + 0 NA intron (ENSMUSG00000032485.14, intron 2 of 2) protein_coding-intron (ENSMUSG00000032485.14, intron 3 of 22) 6202 ENSMUSG00000091102.1 ENSMUSG00000091102 ENSMUST00000168137 5830462I19Rik TEC Interval_127360 chr5 103385251 103385543 + 0 NA Intergenic Intergenic -28699 ENSMUSG00000104684.1 ENSMUSG00000104684 ENSMUST00000200007 5430427N15Rik lincRNA Interval_54406 chr14 68572830 68573197 + 0 NA intron (ENSMUSG00000022057.8, intron 6 of 13) protein_coding-intron (ENSMUSG00000022057.8, intron 6 of 13) 9082 ENSMUSG00000022057.8 ENSMUSG00000022057 ENSMUST00000022641 Adamdec1 protein_coding Interval_169610 chr9 99428395 99428902 + 0 NA intron (ENSMUSG00000032470.17, intron 1 of 5) protein_coding-intron (ENSMUSG00000032470.17, intron 1 of 5) -22827 ENSMUSG00000046242.8 ENSMUSG00000046242 ENSMUST00000056103 Nme9 protein_coding Interval_159991 chr8 105635636 105637904 + 0 NA promoter-TSS (ENSMUSG00000005698.15) protein_coding-promoter-TSS (ENSMUSG00000005698.15) 580 ENSMUSG00000098120.1 ENSMUSG00000098120 ENSMUST00000182046 Gm5914 lincRNA Interval_53979 chr14 64046087 64046803 + 0 NA Intergenic Intergenic 16572 ENSMUSG00000046049.7 ENSMUSG00000046049 ENSMUST00000224314 Rp1l1 protein_coding Interval_9944 chr1 164287073 164288191 + 0 NA exon (ENSMUSG00000026578.6, exon 6 of 6) protein_coding-exon (ENSMUSG00000026578.6, exon 6 of 6) 12047 ENSMUSG00000026578.6 ENSMUSG00000026578 ENSMUST00000027867 Ccdc181 protein_coding Interval_40640 chr12 106212251 106213065 + 0 NA Intergenic Intergenic -8417 ENSMUSG00000077640.1 ENSMUSG00000077640 ENSMUST00000104452 Gm24986 snoRNA Interval_6559 chr1 116550345 116551015 + 0 NA intron (ENSMUSG00000070695.4, intron 21 of 23) protein_coding-intron (ENSMUSG00000070695.4, intron 21 of 23) -83097 ENSMUSG00000102033.1 ENSMUSG00000102033 ENSMUST00000185884 Gm28263 processed_pseudogene Interval_85449 chr19 26615241 26616408 + 0 NA intron (ENSMUSG00000024921.17, intron 1 of 32) protein_coding-intron (ENSMUSG00000024921.17, intron 1 of 32) 7586 ENSMUSG00000093628.1 ENSMUSG00000093628 ENSMUST00000177453 Gm20616 antisense Interval_165474 chr9 48525353 48526123 + 0 NA Intergenic Intergenic -18678 ENSMUSG00000080401.1 ENSMUSG00000080401 ENSMUST00000116751 Gm23653 miRNA Interval_161752 chr8 122550496 122551996 + 0 NA promoter-TSS (ENSMUSG00000014444.17) protein_coding-promoter-TSS (ENSMUSG00000014444.17) 83 ENSMUSG00000014444.17 ENSMUSG00000014444 ENSMUST00000148497 Piezo1 protein_coding Interval_57732 chr15 17232901 17233112 + 0 NA Intergenic Intergenic -156067 ENSMUSG00000115182.1 ENSMUSG00000115182 ENSMUST00000227358 Gm49128 lincRNA Interval_173 JH584304.1 103492 104629 + 0 NA NA NA NA NA Interval_145015 chr7 29436266 29437099 + 0 NA intron (ENSMUSG00000030583.16, intron 1 of 2) protein_coding-intron (ENSMUSG00000030583.16, intron 2 of 22) -59077 ENSMUSG00000030583.16 ENSMUSG00000030583 ENSMUST00000183085 Sipa1l3 protein_coding Interval_30928 chr11 97260954 97261599 + 0 NA intron (ENSMUSG00000001441.13, intron 2 of 21) protein_coding-intron (ENSMUSG00000001441.13, intron 2 of 22) -18852 ENSMUSG00000086680.2 ENSMUSG00000086680 ENSMUST00000133160 Gm11592 antisense Interval_109314 chr3 138856849 138857175 + 0 NA intron (ENSMUSG00000028152.10, intron 1 of 7) protein_coding-intron (ENSMUSG00000028152.10, intron 1 of 7) -27850 ENSMUSG00000086123.3 ENSMUSG00000086123 ENSMUST00000153140 Gm16060 processed_pseudogene Interval_104309 chr3 63222372 63222748 + 0 NA Intergenic Intergenic -48699 ENSMUSG00000102270.1 ENSMUSG00000102270 ENSMUST00000193000 Gm8388 processed_pseudogene Interval_7135 chr1 126993081 126993660 + 0 NA Intergenic Intergenic 57326 ENSMUSG00000101385.1 ENSMUSG00000101385 ENSMUST00000185860 Gm5261 processed_pseudogene Interval_48346 chr13 98390688 98392231 + 0 NA Intergenic Intergenic 11624 ENSMUSG00000098113.1 ENSMUSG00000098113 ENSMUST00000182798 Gm2445 processed_pseudogene Interval_46681 chr13 68835286 68836033 + 0 NA intron (ENSMUSG00000021536.7, intron 3 of 24) protein_coding-intron (ENSMUSG00000021536.7, intron 3 of 24) -20874 ENSMUSG00000113859.1 ENSMUSG00000113859 ENSMUST00000223009 Gm7979 processed_pseudogene Interval_157409 chr8 70180700 70181963 + 0 NA TTS (ENSMUSG00000002342.17) protein_coding-TTS (ENSMUSG00000002342.17) 8923 ENSMUSG00000002342.17 ENSMUSG00000002342 ENSMUST00000143543 Tmem161a protein_coding Interval_91260 chr2 36877558 36878826 + 0 NA Intergenic Intergenic 9732 ENSMUSG00000053146.2 ENSMUSG00000053146 ENSMUST00000065416 Olfr352 protein_coding Interval_20781 chr10 120916427 120916785 + 0 NA Intergenic Intergenic -11580 ENSMUSG00000082936.1 ENSMUSG00000082936 ENSMUST00000118291 Gm16166 processed_pseudogene Interval_141735 chr6 134127528 134128257 + 0 NA intron (ENSMUSG00000030199.16, intron 2 of 8) protein_coding-intron (ENSMUSG00000030199.16, intron 1 of 7) 43291 ENSMUSG00000108238.1 ENSMUSG00000108238 ENSMUST00000204572 Gm43984 TEC Interval_118678 chr4 133150438 133150759 + 0 NA intron (ENSMUSG00000028868.13, intron 1 of 8) protein_coding-intron (ENSMUSG00000028868.13, intron 1 of 8) 20058 ENSMUSG00000028868.13 ENSMUSG00000028868 ENSMUST00000136637 Wasf2 protein_coding Interval_84003 chr19 6046107 6047907 + 0 NA promoter-TSS (ENSMUSG00000024807.18) protein_coding-promoter-TSS (ENSMUSG00000024807.18) -54 ENSMUSG00000024807.18 ENSMUSG00000024807 ENSMUST00000025723 Syvn1 protein_coding Interval_72160 chr17 28344025 28346195 + 0 NA intron (ENSMUSG00000002249.21, intron 1 of 12) protein_coding-intron (ENSMUSG00000002249.21, intron 1 of 12) 5675 ENSMUSG00000002249.21 ENSMUSG00000002249 ENSMUST00000233330 Tead3 protein_coding Interval_81264 chr18 56924704 56926275 + 0 NA promoter-TSS (ENSMUSG00000032656.14) protein_coding-promoter-TSS (ENSMUSG00000032656.14) 26 ENSMUSG00000032656.14 ENSMUSG00000032656 ENSMUST00000153044 Marchf3 protein_coding Interval_172272 chrX 12152803 12154097 + 0 NA intron (ENSMUSG00000040363.15, intron 1 of 4) protein_coding-intron (ENSMUSG00000040363.15, intron 1 of 13) 6896 ENSMUSG00000040363.15 ENSMUSG00000040363 ENSMUST00000209776 Bcor protein_coding Interval_145026 chr7 29495039 29495765 + 0 NA intron (ENSMUSG00000030583.16, intron 1 of 1) protein_coding-intron (ENSMUSG00000030583.16, intron 2 of 22) -29141 ENSMUSG00000074224.3 ENSMUSG00000074224 ENSMUST00000098602 4932431P20Rik transcribed_unitary_pseudogene Interval_75800 chr17 71474219 71476127 + 0 NA exon (ENSMUSG00000024054.14, exon 1 of 48) protein_coding-exon (ENSMUSG00000024054.14, exon 1 of 48) -8219 ENSMUSG00000117107.1 ENSMUSG00000117107 ENSMUST00000232895 Gm18738 processed_pseudogene Interval_30807 chr11 96612549 96613035 + 0 NA intron (ENSMUSG00000057058.16, intron 4 of 7) protein_coding-intron (ENSMUSG00000057058.16, intron 4 of 11) 129010 ENSMUSG00000057058.16 ENSMUSG00000057058 ENSMUST00000123814 Skap1 protein_coding Interval_173509 chrX 96931436 96931959 + 0 NA Intergenic Intergenic 3527 ENSMUSG00000082397.1 ENSMUSG00000082397 ENSMUST00000117163 Gm14803 processed_pseudogene Interval_4651 chr1 75667641 75668389 + 0 NA Intergenic Intergenic 31625 ENSMUSG00000082012.1 ENSMUSG00000082012 ENSMUST00000121823 Gm5257 processed_pseudogene Interval_9942 chr1 164275205 164276079 + 0 NA promoter-TSS (ENSMUSG00000026578.6) protein_coding-promoter-TSS (ENSMUSG00000026578.6) 57 ENSMUSG00000026578.6 ENSMUSG00000026578 ENSMUST00000027867 Ccdc181 protein_coding Interval_66447 chr16 33895609 33896013 + 0 NA intron (ENSMUSG00000022817.15, intron 2 of 5) protein_coding-intron (ENSMUSG00000022817.15, intron 5 of 14) 3870 ENSMUSG00000022817.15 ENSMUSG00000022817 ENSMUST00000231409 Itgb5 protein_coding Interval_35476 chr12 22951841 22954684 + 0 NA TTS (ENSMUSG00000073164.11) lincRNA-TTS (ENSMUSG00000073164.11) 7044 ENSMUSG00000113670.1 ENSMUSG00000113670 ENSMUST00000222206 Gm49686 transcribed_unprocessed_pseudogene Interval_3435 chr1 58341518 58342250 + 0 NA intron (ENSMUSG00000079554.2, intron 26 of 35) protein_coding-intron (ENSMUSG00000079554.2, intron 26 of 35) -26228 ENSMUSG00000089822.1 ENSMUSG00000089822 ENSMUST00000161126 Gm15759 antisense Interval_172510 chrX 22534221 22534610 + 0 NA Intergenic Intergenic 72783 ENSMUSG00000052025.9 ENSMUSG00000052025 ENSMUST00000140102 Ppp1r2-ps7 transcribed_processed_pseudogene Interval_93747 chr2 76532704 76532935 + 0 NA intron (ENSMUSG00000042359.18, intron 3 of 4) protein_coding-intron (ENSMUSG00000042359.18, intron 3 of 26) -15521 ENSMUSG00000042359.18 ENSMUSG00000042359 ENSMUST00000124601 Osbpl6 protein_coding Interval_59542 chr15 55166527 55166830 + 0 NA intron (ENSMUSG00000022419.16, intron 3 of 4) protein_coding-intron (ENSMUSG00000022419.16, intron 3 of 8) 33225 ENSMUSG00000022419.16 ENSMUSG00000022419 ENSMUST00000226687 Deptor protein_coding Interval_76694 chr17 83546155 83547937 + 0 NA Intergenic Intergenic -42540 ENSMUSG00000024248.14 ENSMUSG00000024248 ENSMUST00000234258 Cox7a2l protein_coding Interval_82942 chr18 79862638 79863157 + 0 NA promoter-TSS (ENSMUSG00000117963.1) processed_pseudogene-promoter-TSS (ENSMUSG00000117963.1) -998 ENSMUSG00000117963.1 ENSMUSG00000117963 ENSMUST00000237996 Gm19062 processed_pseudogene Interval_52375 chr14 45469367 45469930 + 0 NA intron (ENSMUSG00000037712.16, intron 4 of 4) protein_coding-intron (ENSMUSG00000037712.16, intron 7 of 14) -8003 ENSMUSG00000088769.1 ENSMUSG00000088769 ENSMUST00000158144 Gm22637 misc_RNA Interval_24931 chr11 41604799 41605170 + 0 NA Intergenic Intergenic 13862 ENSMUSG00000081847.1 ENSMUSG00000081847 ENSMUST00000117114 Gm12142 processed_pseudogene Interval_39352 chr12 86871371 86872673 + 0 NA Intergenic Intergenic 12776 ENSMUSG00000034168.7 ENSMUSG00000034168 ENSMUST00000038422 Irf2bpl protein_coding Interval_153711 chr8 4933946 4934791 + 0 NA Intergenic Intergenic 73199 ENSMUSG00000062152.4 ENSMUSG00000062152 ENSMUST00000080279 Rpl21-ps14 processed_pseudogene Interval_97651 chr2 142163428 142164615 + 0 NA intron (ENSMUSG00000068205.14, intron 3 of 13) protein_coding-intron (ENSMUSG00000068205.14, intron 8 of 17) -12586 ENSMUSG00000068205.14 ENSMUSG00000068205 ENSMUST00000156619 Macrod2 protein_coding Interval_70313 chr17 8415405 8416019 + 0 NA intron (ENSMUSG00000058159.14, intron 8 of 9) protein_coding-intron (ENSMUSG00000058159.14, intron 7 of 10) -19699 ENSMUSG00000062327.10 ENSMUSG00000062327 ENSMUST00000177118 T protein_coding Interval_35280 chr12 19648570 19649116 + 0 NA Intergenic Intergenic -9203 ENSMUSG00000113714.1 ENSMUSG00000113714 ENSMUST00000221889 Gm48635 processed_pseudogene Interval_163954 chr9 29650488 29652013 + 0 NA intron (ENSMUSG00000059974.10, intron 1 of 2) protein_coding-intron (ENSMUSG00000059974.10, intron 1 of 7) -58740 ENSMUSG00000085638.1 ENSMUSG00000085638 ENSMUST00000141752 Gm15521 sense_intronic Interval_111947 chr4 32735378 32735787 + 0 NA exon (ENSMUSG00000058006.12, exon 63 of 102) protein_coding-exon (ENSMUSG00000058006.12, exon 63 of 102) -64697 ENSMUSG00000045854.4 ENSMUSG00000045854 ENSMUST00000130321 Lyrm2 protein_coding Interval_35064 chr12 16999227 17000854 + 0 NA promoter-TSS (ENSMUSG00000045679.14) protein_coding-promoter-TSS (ENSMUSG00000045679.14) 27 ENSMUSG00000045679.14 ENSMUSG00000045679 ENSMUST00000137960 Pqlc3 protein_coding Interval_145719 chr7 37724993 37725383 + 0 NA intron (ENSMUSG00000043456.17, intron 1 of 3) protein_coding-intron (ENSMUSG00000043456.17, intron 1 of 5) 55389 ENSMUSG00000093540.2 ENSMUSG00000093540 ENSMUST00000175854 4930505M18Rik antisense Interval_36905 chr12 55078473 55079256 + 0 NA intron (ENSMUSG00000062198.5, intron 1 of 5) protein_coding-intron (ENSMUSG00000062198.5, intron 1 of 7) 1240 ENSMUSG00000062198.5 ENSMUSG00000062198 ENSMUST00000156852 2700097O09Rik protein_coding Interval_156773 chr8 58886302 58886612 + 0 NA intron (ENSMUSG00000096914.3, intron 2 of 12) protein_coding-intron (ENSMUSG00000096914.3, intron 1 of 3) -25800 ENSMUSG00000049946.7 ENSMUSG00000049946 ENSMUST00000160055 BC030500 protein_coding Interval_7741 chr1 133367377 133368140 + 0 NA intron (ENSMUSG00000070644.13, intron 1 of 4) protein_coding-intron (ENSMUSG00000070644.13, intron 1 of 6) 1994 ENSMUSG00000070644.13 ENSMUSG00000070644 ENSMUST00000131450 Etnk2 protein_coding Interval_111497 chr4 22204254 22204739 + 0 NA Intergenic Intergenic -71337 ENSMUSG00000083376.1 ENSMUSG00000083376 ENSMUST00000121463 Gm11882 processed_pseudogene Interval_29347 chr11 83359551 83359850 + 0 NA intron (ENSMUSG00000035152.14, intron 14 of 20) protein_coding-intron (ENSMUSG00000035152.14, intron 14 of 21) 7301 ENSMUSG00000077217.1 ENSMUSG00000077217 ENSMUST00000104029 Gm23951 snoRNA Interval_101363 chr2 180789044 180789539 + 0 NA Intergenic Intergenic -12391 ENSMUSG00000045493.4 ENSMUSG00000045493 ENSMUST00000108878 Bhlhe23 protein_coding Interval_70946 chr17 16614739 16615069 + 0 NA Intergenic Intergenic 55282 ENSMUSG00000116864.1 ENSMUSG00000116864 ENSMUST00000231447 Gm3320 processed_pseudogene Interval_89742 chr2 25167572 25168638 + 0 NA intron (ENSMUSG00000118563.1, intron 13 of 13) unitary_pseudogene-intron (ENSMUSG00000118563.1, intron 13 of 13) -12653 ENSMUSG00000078202.3 ENSMUSG00000078202 ENSMUST00000104999 Nrarp protein_coding Interval_121091 chr4 152881469 152881791 + 0 NA Intergenic Intergenic 131954 ENSMUSG00000080360.1 ENSMUSG00000080360 ENSMUST00000116710 Gm25779 miRNA Interval_80438 chr18 42234430 42235318 + 0 NA intron (ENSMUSG00000024493.9, intron 14 of 14) protein_coding-intron (ENSMUSG00000024493.9, intron 13 of 31) -17524 ENSMUSG00000096699.1 ENSMUSG00000096699 ENSMUST00000091925 Rps19-ps4 processed_pseudogene Interval_121349 chr4 155162471 155164942 + 0 NA intron (ENSMUSG00000029050.15, intron 2 of 7) protein_coding-intron (ENSMUSG00000029050.15, intron 1 of 6) 24590 ENSMUSG00000029050.15 ENSMUSG00000029050 ENSMUST00000030917 Ski protein_coding Interval_31443 chr11 100701223 100703979 + 0 NA TTS (ENSMUSG00000017830.15) protein_coding-TTS (ENSMUSG00000017830.15) 746 ENSMUSG00000017830.15 ENSMUSG00000017830 ENSMUST00000132930 Dhx58 protein_coding Interval_98534 chr2 153054712 153055828 + 0 NA exon (ENSMUSG00000042631.7, exon 3 of 3) protein_coding-exon (ENSMUSG00000042631.7, exon 3 of 3) -10685 ENSMUSG00000027474.13 ENSMUSG00000027474 ENSMUST00000109800 Ccm2l protein_coding Interval_162304 chr8 126931609 126933299 + 0 NA exon (ENSMUSG00000093904.2, exon 5 of 5) protein_coding-exon (ENSMUSG00000093904.2, exon 5 of 5) 12526 ENSMUSG00000065637.1 ENSMUSG00000065637 ENSMUST00000083703 Gm26397 snoRNA Interval_169221 chr9 95623233 95623968 + 0 NA promoter-TSS (ENSMUSG00000065346.1) snoRNA-promoter-TSS (ENSMUSG00000065346.1) -902 ENSMUSG00000065346.1 ENSMUSG00000065346 ENSMUST00000083412 Gm25582 snoRNA Interval_17114 chr10 71413344 71414048 + 0 NA intron (ENSMUSG00000060733.13, intron 1 of 1) protein_coding-intron (ENSMUSG00000060733.13, intron 2 of 2) 65860 ENSMUSG00000060733.13 ENSMUSG00000060733 ENSMUST00000145521 Ipmk protein_coding Interval_88739 chr2 10100869 10101750 + 0 NA intron (ENSMUSG00000037254.18, intron 16 of 20) protein_coding-intron (ENSMUSG00000037254.18, intron 16 of 20) 11012 ENSMUSG00000037262.7 ENSMUSG00000037262 ENSMUST00000142773 Kin protein_coding Interval_110407 chr3 157866413 157866730 + 0 NA Intergenic Intergenic 22303 ENSMUSG00000104862.1 ENSMUSG00000104862 ENSMUST00000200636 Gm6520 processed_pseudogene Interval_171985 chr9 123199922 123200407 + 0 NA intron (ENSMUSG00000035498.10, intron 1 of 4) protein_coding-intron (ENSMUSG00000035498.10, intron 1 of 8) -22058 ENSMUSG00000035498.10 ENSMUSG00000035498 ENSMUST00000140915 Cdcp1 protein_coding Interval_152993 chr7 140653853 140654211 + 0 NA TTS (ENSMUSG00000094819.3) protein_coding-TTS (ENSMUSG00000094819.3) -5898 ENSMUSG00000059136.4 ENSMUSG00000059136 ENSMUST00000078967 Olfr539 protein_coding Interval_9544 chr1 159231429 159233132 + 0 NA promoter-TSS (ENSMUSG00000040782.12) protein_coding-promoter-TSS (ENSMUSG00000040782.12) -40 ENSMUSG00000040782.12 ENSMUSG00000040782 ENSMUST00000192841 Cop1 protein_coding Interval_173446 chrX 93910986 93911802 + 0 NA Intergenic Intergenic 10568 ENSMUSG00000082728.1 ENSMUSG00000082728 ENSMUST00000117999 Supt20-ps processed_pseudogene Interval_85855 chr19 32412796 32413056 + 0 NA Intergenic Intergenic -10266 ENSMUSG00000118355.1 ENSMUSG00000118355 ENSMUST00000237441 Gm38616 processed_pseudogene Interval_148759 chr7 86100833 86101028 + 0 NA Intergenic Intergenic -17148 ENSMUSG00000092357.1 ENSMUSG00000092357 ENSMUST00000173787 Vmn2r-ps83 unprocessed_pseudogene Interval_78852 chr18 20976658 20977064 + 0 NA intron (ENSMUSG00000033107.6, intron 2 of 5) protein_coding-intron (ENSMUSG00000033107.6, intron 2 of 5) 15389 ENSMUSG00000033107.6 ENSMUSG00000033107 ENSMUST00000234316 Rnf125 protein_coding Interval_79641 chr18 34187921 34189498 + 0 NA TTS (ENSMUSG00000096804.1) snRNA-TTS (ENSMUSG00000096804.1) 230 ENSMUSG00000096804.1 ENSMUSG00000096804 ENSMUST00000157988 Gm23411 snRNA Interval_136302 chr6 52789718 52791568 + 0 NA intron (ENSMUSG00000063568.11, intron 3 of 4) protein_coding-intron (ENSMUSG00000063568.11, intron 3 of 4) 53058 ENSMUSG00000081872.1 ENSMUSG00000081872 ENSMUST00000119248 Gm15572 processed_pseudogene Interval_11660 chr1 184109323 184109658 + 0 NA Intergenic Intergenic -75189 ENSMUSG00000044854.7 ENSMUSG00000044854 ENSMUST00000050306 1700056E22Rik protein_coding Interval_38898 chr12 83677766 83678894 + 0 NA TTS (ENSMUSG00000010608.15) protein_coding-TTS (ENSMUSG00000010608.15) -9858 ENSMUSG00000019969.14 ENSMUSG00000019969 ENSMUST00000221072 Psen1 protein_coding Interval_53698 chr14 60970506 60970786 + 0 NA intron (ENSMUSG00000060548.13, intron 5 of 5) protein_coding-intron (ENSMUSG00000060548.13, intron 9 of 9) 67245 ENSMUSG00000060548.13 ENSMUSG00000060548 ENSMUST00000225730 Tnfrsf19 protein_coding Interval_114000 chr4 62372608 62372913 + 0 NA intron (ENSMUSG00000066150.12, intron 1 of 4) protein_coding-intron (ENSMUSG00000066150.12, intron 1 of 4) -12741 ENSMUSG00000066150.12 ENSMUSG00000066150 ENSMUST00000122092 Slc31a1 protein_coding Interval_27970 chr11 71734013 71734716 + 0 NA Intergenic Intergenic 6083 ENSMUSG00000085251.1 ENSMUSG00000085251 ENSMUST00000152957 Gm12326 lincRNA Interval_13181 chr10 12878607 12879482 + 0 NA Intergenic Intergenic 32956 ENSMUSG00000112698.1 ENSMUSG00000112698 ENSMUST00000219425 Gm7525 processed_pseudogene Interval_66252 chr16 32658948 32659974 + 0 NA intron (ENSMUSG00000022791.19, intron 1 of 14) protein_coding-intron (ENSMUSG00000022791.19, intron 1 of 14) 8736 ENSMUSG00000075265.4 ENSMUSG00000075265 ENSMUST00000141256 Tnk2os antisense Interval_113043 chr4 47161242 47162024 + 0 NA Intergenic Intergenic -10036 ENSMUSG00000083491.1 ENSMUSG00000083491 ENSMUST00000118334 Gm12423 processed_pseudogene Interval_138132 chr6 85377084 85377763 + 0 NA Intergenic Intergenic -35786 ENSMUSG00000051343.11 ENSMUSG00000051343 ENSMUST00000204504 Rab11fip5 protein_coding Interval_45362 chr13 54661066 54662264 + 0 NA TTS (ENSMUSG00000025873.16) protein_coding-TTS (ENSMUSG00000025873.16) 26143 ENSMUSG00000034928.16 ENSMUSG00000034928 ENSMUST00000150626 Rnf44 protein_coding Interval_73998 chr17 45933277 45934010 + 0 NA Intergenic Intergenic -28216 ENSMUSG00000117040.1 ENSMUSG00000117040 ENSMUST00000233512 Gm49805 lincRNA Interval_86288 chr19 38413675 38414771 + 0 NA Intergenic Intergenic 18182 ENSMUSG00000044026.3 ENSMUSG00000044026 ENSMUST00000236865 Slc35g1 protein_coding Interval_38176 chr12 76195918 76197249 + 0 NA Intergenic Intergenic -19324 ENSMUSG00000021055.14 ENSMUSG00000021055 ENSMUST00000076634 Esr2 protein_coding Interval_8735 chr1 150198427 150198697 + 0 NA Intergenic Intergenic -33614 ENSMUSG00000097754.1 ENSMUSG00000097754 ENSMUST00000181308 Ptgs2os2 lincRNA Interval_85224 chr19 23968401 23969243 + 0 NA Intergenic Intergenic 7613 ENSMUSG00000071604.5 ENSMUSG00000071604 ENSMUST00000236123 Fam189a2 protein_coding Interval_76874 chr17 84665737 84665963 + 0 NA intron (ENSMUSG00000040505.13, intron 7 of 9) protein_coding-intron (ENSMUSG00000040505.13, intron 10 of 12) 10576 ENSMUSG00000040505.13 ENSMUSG00000040505 ENSMUST00000172439 Abcg5 protein_coding Interval_13502 chr10 18796933 18797362 + 0 NA exon (ENSMUSG00000110737.1, exon 3 of 3) lincRNA-exon (ENSMUSG00000110737.1, exon 3 of 3) -10354 ENSMUSG00000044624.7 ENSMUSG00000044624 ENSMUST00000055107 Gm4922 protein_coding Interval_144273 chr7 24164134 24164965 + 0 NA Intergenic Intergenic -10537 ENSMUSG00000068962.7 ENSMUSG00000068962 ENSMUST00000086010 Zfp114 protein_coding Interval_75782 chr17 71333950 71334145 + 0 NA intron (ENSMUSG00000117199.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000117199.1, intron 2 of 2) 7719 ENSMUSG00000117199.1 ENSMUSG00000117199 ENSMUST00000232737 Gm4566 lincRNA Interval_68935 chr16 89324817 89325023 + 0 NA Intergenic Intergenic 78948 ENSMUSG00000058368.3 ENSMUSG00000058368 ENSMUST00000078422 Krtap21-1 protein_coding Interval_112247 chr4 38321948 38322441 + 0 NA Intergenic Intergenic 58276 ENSMUSG00000084148.1 ENSMUSG00000084148 ENSMUST00000119012 Gm12380 processed_pseudogene Interval_123948 chr5 36811075 36812072 + 0 NA intron (ENSMUSG00000029119.9, intron 1 of 2) protein_coding-intron (ENSMUSG00000029119.9, intron 15 of 18) 1390 ENSMUSG00000029119.9 ENSMUSG00000029119 ENSMUST00000124711 Man2b2 protein_coding Interval_169284 chr9 96147632 96148093 + 0 NA intron (ENSMUSG00000041440.18, intron 5 of 15) protein_coding-intron (ENSMUSG00000041440.18, intron 6 of 15) -23054 ENSMUSG00000041440.18 ENSMUSG00000041440 ENSMUST00000189249 Gk5 protein_coding Interval_59432 chr15 53116999 53117224 + 0 NA intron (ENSMUSG00000061731.9, intron 1 of 10) protein_coding-intron (ENSMUSG00000061731.9, intron 1 of 10) -9243 ENSMUSG00000061731.9 ENSMUSG00000061731 ENSMUST00000140798 Ext1 protein_coding Interval_136054 chr6 50352009 50352314 + 0 NA promoter-TSS (ENSMUSG00000029822.15) protein_coding-promoter-TSS (ENSMUSG00000029822.15) -204 ENSMUSG00000029822.15 ENSMUSG00000029822 ENSMUST00000154333 Osbpl3 protein_coding Interval_45746 chr13 57555049 57555835 + 0 NA intron (ENSMUSG00000056222.15, intron 6 of 10) protein_coding-intron (ENSMUSG00000056222.15, intron 4 of 9) 278764 ENSMUSG00000114411.1 ENSMUSG00000114411 ENSMUST00000224461 Gm48176 processed_pseudogene Interval_80594 chr18 44495162 44496625 + 0 NA intron (ENSMUSG00000071856.10, intron 4 of 16) protein_coding-intron (ENSMUSG00000071856.10, intron 6 of 18) 115391 ENSMUSG00000024472.9 ENSMUSG00000024472 ENSMUST00000025350 Dcp2 protein_coding Interval_114700 chr4 83987357 83987682 + 0 NA Intergenic Intergenic 57360 ENSMUSG00000085217.1 ENSMUSG00000085217 ENSMUST00000125884 6030471H07Rik lincRNA Interval_160280 chr8 107668184 107668486 + 0 NA Intergenic Intergenic 22509 ENSMUSG00000110508.1 ENSMUSG00000110508 ENSMUST00000212585 Gm8940 processed_pseudogene Interval_139003 chr6 94163056 94163326 + 0 NA intron (ENSMUSG00000045095.16, intron 2 of 2) protein_coding-intron (ENSMUSG00000045095.16, intron 1 of 21) 160843 ENSMUSG00000107545.1 ENSMUSG00000107545 ENSMUST00000204466 Gm44307 processed_pseudogene Interval_110668 chr4 6093185 6094091 + 0 NA intron (ENSMUSG00000049119.14, intron 4 of 4) protein_coding-intron (ENSMUSG00000049119.14, intron 4 of 4) 23764 ENSMUSG00000084360.1 ENSMUSG00000084360 ENSMUST00000121336 Gm11797 processed_pseudogene Interval_150876 chr7 116122805 116123443 + 0 NA TTS (ENSMUSG00000045659.18) protein_coding-TTS (ENSMUSG00000045659.18) 6401 ENSMUSG00000045659.18 ENSMUSG00000045659 ENSMUST00000205446 Plekha7 protein_coding Interval_43642 chr13 34376802 34377093 + 0 NA Intergenic Intergenic 17577 ENSMUSG00000113843.1 ENSMUSG00000113843 ENSMUST00000220725 Gm6129 processed_pseudogene Interval_168390 chr9 79977536 79978115 + 0 NA promoter-TSS (ENSMUSG00000034898.17) protein_coding-promoter-TSS (ENSMUSG00000034898.17) -166 ENSMUSG00000034898.17 ENSMUSG00000034898 ENSMUST00000217264 Filip1 protein_coding Interval_136420 chr6 54296007 54296403 + 0 NA intron (ENSMUSG00000004633.17, intron 4 of 5) protein_coding-intron (ENSMUSG00000004633.17, intron 11 of 12) 23297 ENSMUSG00000004633.17 ENSMUSG00000004633 ENSMUST00000204746 Chn2 protein_coding Interval_110385 chr3 157598229 157598582 + 0 NA intron (ENSMUSG00000040016.16, intron 1 of 1) protein_coding-intron (ENSMUSG00000040016.16, intron 1 of 2) 31505 ENSMUSG00000040016.16 ENSMUSG00000040016 ENSMUST00000173533 Ptger3 protein_coding Interval_41917 chr13 4373305 4373599 + 0 NA intron (ENSMUSG00000113175.1, intron 3 of 3) transcribed_unprocessed_pseudogene-intron (ENSMUSG00000113175.1, intron 2 of 2) 4771 ENSMUSG00000113004.1 ENSMUSG00000113004 ENSMUST00000221635 Gm47951 processed_pseudogene Interval_22333 chr11 8878445 8878729 + 0 NA intron (ENSMUSG00000046634.12, intron 20 of 42) protein_coding-intron (ENSMUSG00000046634.12, intron 27 of 49) 6709 ENSMUSG00000082095.1 ENSMUSG00000082095 ENSMUST00000119652 Gm11991 processed_pseudogene Interval_65353 chr16 21793860 21795267 + 0 NA intron (ENSMUSG00000033618.7, intron 1 of 14) lincRNA-intron (ENSMUSG00000097290.9, intron 1 of 4) 229 ENSMUSG00000097290.9 ENSMUSG00000097290 ENSMUST00000180830 1300002E11Rik lincRNA Interval_57883 chr15 24596365 24596684 + 0 NA Intergenic Intergenic 8954 ENSMUSG00000115004.1 ENSMUSG00000115004 ENSMUST00000226982 Gm48920 processed_pseudogene Interval_50777 chr14 19776339 19777365 + 0 NA intron (ENSMUSG00000021806.4, intron 4 of 16) protein_coding-intron (ENSMUSG00000021806.4, intron 4 of 20) 25568 ENSMUSG00000021806.4 ENSMUSG00000021806 ENSMUST00000224057 Nid2 protein_coding Interval_26870 chr11 61202734 61203328 + 0 NA Intergenic Intergenic 3144 ENSMUSG00000082626.1 ENSMUSG00000082626 ENSMUST00000117939 Rps13-ps5 processed_pseudogene Interval_154822 chr8 23709837 23710452 + 0 NA intron (ENSMUSG00000037492.16, intron 1 of 2) protein_coding-intron (ENSMUSG00000037492.16, intron 1 of 6) 14139 ENSMUSG00000109413.1 ENSMUSG00000109413 ENSMUST00000207763 Gm45165 TEC Interval_124931 chr5 60995286 60995496 + 0 NA Intergenic Intergenic -49742 ENSMUSG00000105903.1 ENSMUSG00000105903 ENSMUST00000199566 1700014F14Rik lincRNA Interval_99501 chr2 162682384 162683123 + 0 NA Intergenic Intergenic 3298 ENSMUSG00000087536.1 ENSMUSG00000087536 ENSMUST00000155173 Gm14246 lincRNA Interval_55612 chr14 95797964 95798632 + 0 NA Intergenic Intergenic -68318 ENSMUSG00000115679.1 ENSMUSG00000115679 ENSMUST00000228033 Gm48995 processed_pseudogene Interval_42116 chr13 8955744 8955986 + 0 NA TTS (ENSMUSG00000095414.1) snoRNA-TTS (ENSMUSG00000095414.1) 199 ENSMUSG00000095414.1 ENSMUSG00000095414 ENSMUST00000104108 Gm23923 snoRNA Interval_117326 chr4 123010379 123010587 + 0 NA Intergenic Intergenic -6114 ENSMUSG00000028653.16 ENSMUSG00000028653 ENSMUST00000141855 Trit1 protein_coding Interval_164327 chr9 35368012 35368257 + 0 NA Intergenic Intergenic -5021 ENSMUSG00000103259.1 ENSMUSG00000103259 ENSMUST00000193707 2610105M22Rik TEC Interval_149463 chr7 98788331 98789786 + 0 NA Intergenic Intergenic -53977 ENSMUSG00000108988.1 ENSMUSG00000108988 ENSMUST00000208941 Gm44934 lincRNA Interval_139489 chr6 100505307 100506176 + 0 NA Intergenic Intergenic 7226 ENSMUSG00000107663.1 ENSMUSG00000107663 ENSMUST00000203242 Gm44107 lincRNA Interval_127180 chr5 100862896 100864680 + 0 NA intron (ENSMUSG00000029314.14, intron 4 of 13) protein_coding-intron (ENSMUSG00000029314.14, intron 3 of 12) -16621 ENSMUSG00000087611.1 ENSMUSG00000087611 ENSMUST00000142871 4930458D05Rik antisense Interval_147678 chr7 71775852 71776261 + 0 NA Intergenic Intergenic 58219 ENSMUSG00000108982.1 ENSMUSG00000108982 ENSMUST00000208796 Gm17988 processed_pseudogene Interval_9078 chr1 153461335 153462143 + 0 NA TTS (ENSMUSG00000042699.11) protein_coding-TTS (ENSMUSG00000042699.11) 16376 ENSMUSG00000042708.12 ENSMUSG00000042708 ENSMUST00000137861 Shcbp1l protein_coding Interval_6090 chr1 96725530 96725979 + 0 NA Intergenic Intergenic -36277 ENSMUSG00000077255.1 ENSMUSG00000077255 ENSMUST00000104067 Gm26078 snoRNA Interval_137244 chr6 70709363 70710141 + 0 NA Intergenic Intergenic 6174 ENSMUSG00000095682.1 ENSMUSG00000095682 ENSMUST00000103404 Igkv3-1 IG_V_gene Interval_165430 chr9 47828315 47829411 + 0 NA intron (ENSMUSG00000032076.20, intron 8 of 9) protein_coding-intron (ENSMUSG00000032076.20, intron 7 of 8) -52126 ENSMUSG00000111155.1 ENSMUSG00000111155 ENSMUST00000216522 Gm47197 TEC Interval_59162 chr15 45666810 45666978 + 0 NA Intergenic Intergenic -295632 ENSMUSG00000115549.1 ENSMUSG00000115549 ENSMUST00000228018 Gm2203 processed_pseudogene Interval_5429 chr1 88720877 88721194 + 0 NA Intergenic Intergenic 1789 ENSMUSG00000101736.1 ENSMUSG00000101736 ENSMUST00000188361 Gm29335 processed_pseudogene Interval_3969 chr1 65156884 65157084 + 0 NA Intergenic Intergenic 29495 ENSMUSG00000025950.16 ENSMUSG00000025950 ENSMUST00000191459 Idh1 protein_coding Interval_119857 chr4 140530815 140531616 + 0 NA intron (ENSMUSG00000040964.16, intron 12 of 15) protein_coding-intron (ENSMUSG00000040964.16, intron 25 of 27) -85051 ENSMUSG00000118416.1 ENSMUSG00000118416 ENSMUST00000238366 Gm50453 unitary_pseudogene Interval_55678 chr14 98932732 98933804 + 0 NA Intergenic Intergenic 10614 ENSMUSG00000115567.1 ENSMUSG00000115567 ENSMUST00000226946 Gm18148 processed_pseudogene Interval_12915 chr10 8095480 8096366 + 0 NA Intergenic Intergenic -74631 ENSMUSG00000112360.1 ENSMUSG00000112360 ENSMUST00000218165 Gm48614 lincRNA Interval_138188 chr6 86052099 86052375 + 0 NA promoter-TSS (ENSMUSG00000030000.10) protein_coding-promoter-TSS (ENSMUSG00000030000.10) 12303 ENSMUSG00000107927.1 ENSMUSG00000107927 ENSMUST00000204669 Gm44090 TEC Interval_99759 chr2 164745483 164746599 + 0 NA promoter-TSS (ENSMUSG00000017299.13) protein_coding-promoter-TSS (ENSMUSG00000017299.13) -110 ENSMUSG00000076434.9 ENSMUSG00000076434 ENSMUST00000130227 Wfdc3 protein_coding Interval_66941 chr16 38651327 38652151 + 0 NA intron (ENSMUSG00000022799.4, intron 1 of 1) protein_coding-intron (ENSMUSG00000022799.4, intron 1 of 11) 34130 ENSMUSG00000081651.1 ENSMUSG00000081651 ENSMUST00000122206 Gm15530 processed_pseudogene Interval_52194 chr14 40124659 40124891 + 0 NA Intergenic Intergenic 90466 ENSMUSG00000077019.1 ENSMUSG00000077019 ENSMUST00000103831 Gm22191 miRNA Interval_73121 chr17 34927910 34929092 + 0 NA intron (ENSMUSG00000007034.15, intron 16 of 19) protein_coding-intron (ENSMUSG00000007034.15, intron 17 of 20) -3362 ENSMUSG00000007038.5 ENSMUSG00000007038 ENSMUST00000174715 Neu1 protein_coding Interval_172453 chrX 20641987 20642192 + 0 NA intron (ENSMUSG00000031060.16, intron 5 of 22) protein_coding-intron (ENSMUSG00000031060.16, intron 5 of 22) -16332 ENSMUSG00000001924.15 ENSMUSG00000001924 ENSMUST00000136915 Uba1 protein_coding Interval_119356 chr4 137117529 137118796 + 0 NA promoter-TSS (ENSMUSG00000085542.1) lincRNA-promoter-TSS (ENSMUSG00000085542.1) -19 ENSMUSG00000087417.1 ENSMUSG00000087417 ENSMUST00000154285 Gm13001 lincRNA Interval_20262 chr10 116512121 116513694 + 0 NA intron (ENSMUSG00000020166.15, intron 4 of 4) protein_coding-intron (ENSMUSG00000020166.15, intron 4 of 4) 3848 ENSMUSG00000052291.8 ENSMUSG00000052291 ENSMUST00000219273 5330438D12Rik processed_transcript Interval_53271 chr14 55713307 55713712 + 0 NA promoter-TSS (ENSMUSG00000022218.16) protein_coding-promoter-TSS (ENSMUSG00000022218.16) -17 ENSMUSG00000022218.16 ENSMUSG00000022218 ENSMUST00000228123 Tgm1 protein_coding Interval_5408 chr1 88577235 88577882 + 0 NA Intergenic Intergenic 26041 ENSMUSG00000100798.1 ENSMUSG00000100798 ENSMUST00000189394 Gm19589 lincRNA Interval_68358 chr16 74093324 74093662 + 0 NA intron (ENSMUSG00000052516.19, intron 2 of 21) protein_coding-intron (ENSMUSG00000052516.19, intron 2 of 25) -27640 ENSMUSG00000116902.1 ENSMUSG00000116902 ENSMUST00000231944 Gm49660 TEC Interval_153951 chr8 11456879 11457196 + 0 NA TTS (ENSMUSG00000110245.1) TEC-TTS (ENSMUSG00000110245.1) 2705 ENSMUSG00000110245.1 ENSMUSG00000110245 ENSMUST00000209418 Gm20100 TEC Interval_14716 chr10 39282640 39282859 + 0 NA intron (ENSMUSG00000111183.1, intron 3 of 3) lincRNA-intron (ENSMUSG00000111183.1, intron 3 of 3) 37703 ENSMUSG00000111008.1 ENSMUSG00000111008 ENSMUST00000213973 Gm31562 lincRNA Interval_30110 chr11 89263630 89263872 + 0 NA Intergenic Intergenic 38581 ENSMUSG00000048616.4 ENSMUSG00000048616 ENSMUST00000061728 Nog protein_coding Interval_65307 chr16 21401824 21402360 + 0 NA Intergenic Intergenic -68963 ENSMUSG00000116632.1 ENSMUSG00000116632 ENSMUST00000231972 Magef1 transcribed_processed_pseudogene Interval_155637 chr8 35454486 35455607 + 0 NA Intergenic Intergenic 15312 ENSMUSG00000110367.1 ENSMUSG00000110367 ENSMUST00000211662 Gm34853 lincRNA Interval_168211 chr9 77974617 77974902 + 0 NA intron (ENSMUSG00000032349.13, intron 3 of 5) protein_coding-intron (ENSMUSG00000032349.13, intron 3 of 7) -17840 ENSMUSG00000111610.1 ENSMUSG00000111610 ENSMUST00000216017 Gm34829 lincRNA Interval_156745 chr8 57799695 57800648 + 0 NA intron (ENSMUSG00000096914.3, intron 3 of 3) protein_coding-intron (ENSMUSG00000096914.3, intron 6 of 7) 42887 ENSMUSG00000096914.3 ENSMUSG00000096914 ENSMUST00000203398 Galntl6 protein_coding Interval_37596 chr12 70173914 70174492 + 0 NA intron (ENSMUSG00000090121.10, intron 7 of 10) protein_coding-intron (ENSMUSG00000090121.10, intron 7 of 10) 20046 ENSMUSG00000090121.10 ENSMUSG00000090121 ENSMUST00000161541 Abhd12b protein_coding Interval_116255 chr4 109069922 109070112 + 0 NA intron (ENSMUSG00000028559.17, intron 15 of 23) protein_coding-intron (ENSMUSG00000028559.17, intron 15 of 23) 45811 ENSMUSG00000053510.12 ENSMUSG00000053510 ENSMUST00000125063 Nrd1 protein_coding Interval_114676 chr4 83669315 83669584 + 0 NA intron (ENSMUSG00000052407.17, intron 16 of 25) protein_coding-intron (ENSMUSG00000052407.17, intron 16 of 25) -31635 ENSMUSG00000080793.1 ENSMUSG00000080793 ENSMUST00000118595 Cbx3-ps3 processed_pseudogene Interval_39902 chr12 99519304 99519552 + 0 NA intron (ENSMUSG00000033713.12, intron 1 of 2) protein_coding-intron (ENSMUSG00000033713.12, intron 1 of 2) 44108 ENSMUSG00000033713.12 ENSMUSG00000033713 ENSMUST00000221283 Foxn3 protein_coding Interval_160796 chr8 112395784 112396047 + 0 NA Intergenic Intergenic -158949 ENSMUSG00000110435.1 ENSMUSG00000110435 ENSMUST00000212314 Gm3635 processed_pseudogene Interval_33427 chr11 116489837 116491180 + 0 NA promoter-TSS (ENSMUSG00000015869.16) protein_coding-promoter-TSS (ENSMUSG00000015869.16) -194 ENSMUSG00000015869.16 ENSMUSG00000015869 ENSMUST00000144154 Prpsap1 protein_coding Interval_172984 chrX 60045372 60046187 + 0 NA exon (ENSMUSG00000046993.6, exon 1 of 1) processed_pseudogene-exon (ENSMUSG00000046993.6, exon 1 of 1) 450 ENSMUSG00000046993.6 ENSMUSG00000046993 ENSMUST00000153890 Gm5637 processed_pseudogene Interval_140245 chr6 115764124 115764751 + 0 NA Intergenic Intergenic -2027 ENSMUSG00000059900.14 ENSMUSG00000059900 ENSMUST00000166254 Tmem40 protein_coding Interval_144412 chr7 25000607 25001072 + 0 NA intron (ENSMUSG00000040907.15, intron 3 of 22) protein_coding-intron (ENSMUSG00000040907.15, intron 3 of 22) 5104 ENSMUSG00000040907.15 ENSMUSG00000040907 ENSMUST00000125444 Atp1a3 protein_coding Interval_103780 chr3 52727462 52728613 + 0 NA Intergenic Intergenic -5282 ENSMUSG00000065926.1 ENSMUSG00000065926 ENSMUST00000083992 Gm22798 snRNA Interval_129963 chr5 123343796 123345576 + 0 NA promoter-TSS (ENSMUSG00000087336.2) antisense-promoter-TSS (ENSMUSG00000087336.2) -351 ENSMUSG00000087336.2 ENSMUSG00000087336 ENSMUST00000137257 Gm15860 antisense Interval_22621 chr11 12344308 12344827 + 0 NA intron (ENSMUSG00000020173.17, intron 5 of 11) protein_coding-intron (ENSMUSG00000020173.17, intron 6 of 14) 22292 ENSMUSG00000086584.8 ENSMUSG00000086584 ENSMUST00000174550 Gm12002 antisense Interval_163866 chr9 27287226 27287989 + 0 NA Intergenic Intergenic 5737 ENSMUSG00000111387.1 ENSMUSG00000111387 ENSMUST00000217080 Gm48803 lincRNA Interval_88235 chr19 60896991 60897846 + 0 NA intron (ENSMUSG00000003228.9, intron 1 of 4) protein_coding-intron (ENSMUSG00000003228.9, intron 1 of 15) 6955 ENSMUSG00000003228.9 ENSMUSG00000003228 ENSMUST00000236876 Grk5 protein_coding Interval_33260 chr11 115521361 115522739 + 0 NA Intergenic Intergenic -7679 ENSMUSG00000020737.12 ENSMUSG00000020737 ENSMUST00000142238 Jpt1 protein_coding Interval_174516 chrX 155305798 155306090 + 0 NA promoter-TSS (ENSMUSG00000052157.4) processed_pseudogene-promoter-TSS (ENSMUSG00000052157.4) -195 ENSMUSG00000052157.4 ENSMUSG00000052157 ENSMUST00000144428 Gm650 processed_pseudogene Interval_157537 chr8 71271882 71273350 + 0 NA promoter-TSS (ENSMUSG00000004677.17) protein_coding-promoter-TSS (ENSMUSG00000004677.17) -98 ENSMUSG00000004677.17 ENSMUSG00000004677 ENSMUST00000212412 Myo9b protein_coding Interval_41290 chr12 112510618 112511567 + 0 NA promoter-TSS (ENSMUSG00000054013.6) protein_coding-promoter-TSS (ENSMUSG00000054013.6) 5655 ENSMUSG00000054013.6 ENSMUSG00000054013 ENSMUST00000222836 Tmem179 protein_coding Interval_29847 chr11 87251976 87252503 + 0 NA intron (ENSMUSG00000046442.4, intron 1 of 3) protein_coding-intron (ENSMUSG00000046442.4, intron 1 of 6) -52434 ENSMUSG00000080976.1 ENSMUSG00000080976 ENSMUST00000118128 Gm11490 processed_pseudogene Interval_153604 chr8 3671996 3672707 + 0 NA promoter-TSS (ENSMUSG00000089665.2) protein_coding-promoter-TSS (ENSMUSG00000089665.2) 11 ENSMUSG00000089665.2 ENSMUSG00000089665 ENSMUST00000159364 Fcor protein_coding Interval_13609 chr10 20175733 20176578 + 0 NA intron (ENSMUSG00000019996.17, intron 1 of 5) protein_coding-intron (ENSMUSG00000019996.17, intron 1 of 17) 5167 ENSMUSG00000019996.17 ENSMUSG00000019996 ENSMUST00000216308 Map7 protein_coding Interval_34665 chr12 8496380 8496558 + 0 NA Intergenic Intergenic 3540 ENSMUSG00000054364.5 ENSMUSG00000054364 ENSMUST00000067384 Rhob protein_coding Interval_101452 chr2 181519844 181521147 + 0 NA promoter-TSS (ENSMUSG00000000826.16) protein_coding-promoter-TSS (ENSMUSG00000000826.16) -317 ENSMUSG00000000826.16 ENSMUSG00000000826 ENSMUST00000141523 Dnajc5 protein_coding Interval_26204 chr11 55068977 55069605 + 0 NA intron (ENSMUSG00000049588.13, intron 1 of 5) protein_coding-intron (ENSMUSG00000049588.13, intron 1 of 6) 8840 ENSMUSG00000049588.13 ENSMUSG00000049588 ENSMUST00000108880 Ccdc69 protein_coding Interval_139785 chr6 108694930 108695257 + 0 NA Intergenic Intergenic 32047 ENSMUSG00000030103.11 ENSMUSG00000030103 ENSMUST00000204550 Bhlhe40 protein_coding Interval_142718 chr6 145127675 145128240 + 0 NA intron (ENSMUSG00000030263.13, intron 1 of 12) protein_coding-intron (ENSMUSG00000030263.13, intron 1 of 18) 17440 ENSMUSG00000107420.1 ENSMUSG00000107420 ENSMUST00000204561 Gm43910 TEC Interval_135330 chr6 38366114 38366804 + 0 NA promoter-TSS (ENSMUSG00000106836.1) processed_pseudogene-promoter-TSS (ENSMUSG00000106836.1) -557 ENSMUSG00000106836.1 ENSMUSG00000106836 ENSMUST00000201250 Gm43578 processed_pseudogene Interval_52558 chr14 47490202 47491008 + 0 NA promoter-TSS (ENSMUSG00000115570.1) TEC-promoter-TSS (ENSMUSG00000115570.1) -963 ENSMUSG00000115570.1 ENSMUSG00000115570 ENSMUST00000228735 Gm48986 TEC Interval_162683 chr9 7795148 7795346 + 0 NA TTS (ENSMUSG00000050912.15) protein_coding-TTS (ENSMUSG00000050912.15) 10857 ENSMUSG00000093615.1 ENSMUSG00000093615 ENSMUST00000175907 Mir5618 miRNA Interval_92732 chr2 64749291 64749615 + 0 NA Intergenic Intergenic 119135 ENSMUSG00000084104.1 ENSMUSG00000084104 ENSMUST00000120849 Gm13578 processed_pseudogene Interval_32201 chr11 106101710 106101972 + 0 NA intron (ENSMUSG00000020700.11, intron 2 of 15) protein_coding-intron (ENSMUSG00000020700.11, intron 2 of 15) 25510 ENSMUSG00000085229.1 ENSMUSG00000085229 ENSMUST00000140380 Gm11672 antisense Interval_83375 chr18 84684940 84686029 + 0 NA promoter-TSS (ENSMUSG00000024644.17) protein_coding-promoter-TSS (ENSMUSG00000024644.17) -1100 ENSMUSG00000024644.17 ENSMUSG00000024644 ENSMUST00000235149 Cndp2 protein_coding Interval_43058 chr13 23525999 23526631 + 0 NA TTS (ENSMUSG00000085016.1) lincRNA-TTS (ENSMUSG00000085016.1) 4628 ENSMUSG00000085016.1 ENSMUSG00000085016 ENSMUST00000148743 Gm11335 lincRNA Interval_39138 chr12 85373967 85375345 + 0 NA promoter-TSS (ENSMUSG00000021248.9) protein_coding-promoter-TSS (ENSMUSG00000021248.9) 34 ENSMUSG00000021248.9 ENSMUSG00000021248 ENSMUST00000223375 Tmed10 protein_coding Interval_157579 chr8 71518818 71519287 + 0 NA Intergenic Intergenic -4522 ENSMUSG00000110619.1 ENSMUSG00000110619 ENSMUST00000212909 Gm7850 processed_pseudogene Interval_126180 chr5 81593393 81593606 + 0 NA intron (ENSMUSG00000037605.16, intron 9 of 12) protein_coding-intron (ENSMUSG00000037605.16, intron 7 of 24) 57773 ENSMUSG00000107375.1 ENSMUSG00000107375 ENSMUST00000200696 Gm43084 TEC Interval_95663 chr2 113824693 113825072 + 0 NA intron (ENSMUSG00000023236.7, intron 2 of 5) protein_coding-intron (ENSMUSG00000023236.7, intron 2 of 5) 3880 ENSMUSG00000023236.7 ENSMUSG00000023236 ENSMUST00000139975 Scg5 protein_coding Interval_159281 chr8 92761882 92762607 + 0 NA Intergenic Intergenic -45269 ENSMUSG00000078967.5 ENSMUSG00000078967 ENSMUST00000181181 Gapdh-ps16 processed_pseudogene Interval_2499 chr1 39756801 39757130 + 0 NA Intergenic Intergenic -35968 ENSMUSG00000057173.8 ENSMUSG00000057173 ENSMUST00000126760 Rfx8 protein_coding Interval_45966 chr13 59690668 59691750 + 0 NA intron (ENSMUSG00000049902.6, intron 3 of 6) protein_coding-intron (ENSMUSG00000049902.6, intron 3 of 4) 2838 ENSMUSG00000114727.1 ENSMUSG00000114727 ENSMUST00000225788 Gm47269 processed_pseudogene Interval_151095 chr7 118518525 118519181 + 0 NA intron (ENSMUSG00000030652.11, intron 5 of 6) protein_coding-intron (ENSMUSG00000030652.11, intron 5 of 6) 14444 ENSMUSG00000030652.11 ENSMUSG00000030652 ENSMUST00000127700 Coq7 protein_coding Interval_139400 chr6 99854199 99855662 + 0 NA Intergenic Intergenic -14616 ENSMUSG00000107713.1 ENSMUSG00000107713 ENSMUST00000205215 Gm6681 processed_pseudogene Interval_23350 chr11 21683082 21684295 + 0 NA exon (ENSMUSG00000083761.1, exon 1 of 1) processed_pseudogene-exon (ENSMUSG00000083761.1, exon 1 of 1) 368 ENSMUSG00000083761.1 ENSMUSG00000083761 ENSMUST00000119107 Pgam1-ps1 processed_pseudogene Interval_164821 chr9 42209771 42210007 + 0 NA promoter-TSS (ENSMUSG00000111767.1) lincRNA-promoter-TSS (ENSMUSG00000111767.1) -676 ENSMUSG00000111767.1 ENSMUSG00000111767 ENSMUST00000216643 4930546K05Rik lincRNA Interval_73172 chr17 35258209 35258454 + 0 NA Intergenic Intergenic 7042 ENSMUSG00000098269.1 ENSMUSG00000098269 ENSMUST00000183361 Mir8094 miRNA Interval_26513 chr11 58292884 58293388 + 0 NA intron (ENSMUSG00000069873.4, intron 6 of 6) protein_coding-intron (ENSMUSG00000069873.4, intron 6 of 6) -13933 ENSMUSG00000037243.17 ENSMUSG00000037243 ENSMUST00000049353 Zfp692 protein_coding Interval_61475 chr15 81848009 81849482 + 0 NA exon (ENSMUSG00000048546.8, exon 2 of 2) protein_coding-exon (ENSMUSG00000048546.8, exon 2 of 2) -5032 ENSMUSG00000069439.3 ENSMUSG00000069439 ENSMUST00000092020 Gm8444 processed_pseudogene Interval_161168 chr8 118016078 118017737 + 0 NA Intergenic Intergenic -104047 ENSMUSG00000065028.1 ENSMUSG00000065028 ENSMUST00000083094 Gm25200 snoRNA Interval_93951 chr2 79865192 79866019 + 0 NA intron (ENSMUSG00000059173.19, intron 12 of 15) protein_coding-intron (ENSMUSG00000059173.19, intron 12 of 13) 79014 ENSMUSG00000034683.12 ENSMUSG00000034683 ENSMUST00000144432 Ppp1r1c protein_coding Interval_95550 chr2 112203166 112203616 + 0 NA Intergenic Intergenic 35667 ENSMUSG00000109522.1 ENSMUSG00000109522 ENSMUST00000208550 Olfr1319-ps1 unprocessed_pseudogene Interval_135613 chr6 41576301 41576869 + 0 NA Intergenic Intergenic -18133 ENSMUSG00000076499.3 ENSMUSG00000076499 ENSMUST00000193003 Trbv31 TR_V_gene Interval_73903 chr17 45403286 45404650 + 0 NA intron (ENSMUSG00000023932.9, intron 14 of 15) protein_coding-intron (ENSMUSG00000023932.9, intron 14 of 15) 29573 ENSMUSG00000023932.9 ENSMUSG00000023932 ENSMUST00000232910 Cdc5l protein_coding Interval_23150 chr11 20187027 20187257 + 0 NA Intergenic Intergenic 7593 ENSMUSG00000084442.1 ENSMUSG00000084442 ENSMUST00000122493 Gm26253 snRNA Interval_73792 chr17 43699136 43699749 + 0 NA TTS (ENSMUSG00000084474.1) snRNA-TTS (ENSMUSG00000084474.1) 1079 ENSMUSG00000084474.1 ENSMUSG00000084474 ENSMUST00000122525 Gm25783 snRNA Interval_124666 chr5 52996548 52996949 + 0 NA TTS (ENSMUSG00000106538.1) lincRNA-TTS (ENSMUSG00000106538.1) -4456 ENSMUSG00000106352.4 ENSMUSG00000106352 ENSMUST00000196858 5033403H07Rik processed_transcript Interval_51217 chr14 25116237 25116815 + 0 NA Intergenic Intergenic 7142 ENSMUSG00000114288.1 ENSMUSG00000114288 ENSMUST00000225462 Gm32123 lincRNA Interval_165288 chr9 46038855 46039344 + 0 NA intron (ENSMUSG00000034135.15, intron 1 of 24) protein_coding-intron (ENSMUSG00000034135.15, intron 1 of 22) -54316 ENSMUSG00000003131.7 ENSMUSG00000003131 ENSMUST00000214996 Pafah1b2 protein_coding Interval_110349 chr3 157270871 157271244 + 0 NA intron (ENSMUSG00000040037.13, intron 6 of 6) protein_coding-intron (ENSMUSG00000040037.13, intron 6 of 6) -33726 ENSMUSG00000094982.1 ENSMUSG00000094982 ENSMUST00000177876 Gm23725 snRNA Interval_44673 chr13 47055449 47057041 + 0 NA intron (ENSMUSG00000038080.17, intron 6 of 20) protein_coding-intron (ENSMUSG00000038080.17, intron 6 of 20) 12675 ENSMUSG00000038080.17 ENSMUSG00000038080 ENSMUST00000128977 Kdm1b protein_coding Interval_160672 chr8 111510285 111510874 + 0 NA intron (ENSMUSG00000031959.15, intron 1 of 26) protein_coding-intron (ENSMUSG00000031959.15, intron 1 of 26) -19826 ENSMUSG00000031959.15 ENSMUSG00000031959 ENSMUST00000212327 Wdr59 protein_coding Interval_164334 chr9 35443465 35443798 + 0 NA intron (ENSMUSG00000038119.15, intron 2 of 10) protein_coding-intron (ENSMUSG00000038119.15, intron 1 of 19) 20043 ENSMUSG00000038119.15 ENSMUSG00000038119 ENSMUST00000127264 Cdon protein_coding Interval_122660 chr5 24526026 24527356 + 0 NA exon (ENSMUSG00000067724.5, exon 1 of 2) protein_coding-exon (ENSMUSG00000067724.5, exon 1 of 2) 511 ENSMUSG00000067724.5 ENSMUSG00000067724 ENSMUST00000088311 Gbx1 protein_coding Interval_157540 chr8 71290156 71291131 + 0 NA exon (ENSMUSG00000004677.17, exon 2 of 40) protein_coding-exon (ENSMUSG00000004677.17, exon 2 of 40) 17929 ENSMUSG00000004677.17 ENSMUSG00000004677 ENSMUST00000212412 Myo9b protein_coding Interval_3794 chr1 63112987 63114782 + 0 NA promoter-TSS (ENSMUSG00000084799.7) lincRNA-promoter-TSS (ENSMUSG00000084799.7) -856 ENSMUSG00000084799.7 ENSMUSG00000084799 ENSMUST00000188602 Ino80dos lincRNA Interval_42385 chr13 12519299 12520631 + 0 NA exon (ENSMUSG00000095105.2, exon 1 of 6) protein_coding-exon (ENSMUSG00000095105.2, exon 1 of 6) 473 ENSMUSG00000095105.2 ENSMUSG00000095105 ENSMUST00000179308 Edaradd protein_coding Interval_77364 chr17 88258357 88258781 + 0 NA intron (ENSMUSG00000117351.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000117351.1, intron 1 of 1) 46809 ENSMUSG00000117497.1 ENSMUSG00000117497 ENSMUST00000234925 1700116H05Rik lincRNA Interval_154513 chr8 18827343 18828236 + 0 NA Intergenic Intergenic -18488 ENSMUSG00000031467.10 ENSMUSG00000031467 ENSMUST00000033847 Agpat5 protein_coding Interval_26728 chr11 60045808 60046805 + 0 NA intron (ENSMUSG00000000301.16, intron 1 of 1) protein_coding-intron (ENSMUSG00000000301.16, intron 1 of 6) -53241 ENSMUSG00000098502.1 ENSMUSG00000098502 ENSMUST00000183502 Gm27511 misc_RNA Interval_71052 chr17 17490820 17492450 + 0 NA Intergenic Intergenic -8708 ENSMUSG00000116532.1 ENSMUSG00000116532 ENSMUST00000232178 Gm5232 processed_pseudogene Interval_13848 chr10 23826423 23827098 + 0 NA exon (ENSMUSG00000037455.16, exon 14 of 14) protein_coding-exon (ENSMUSG00000037455.16, exon 14 of 14) -24702 ENSMUSG00000020010.7 ENSMUSG00000020010 ENSMUST00000020190 Vnn3 protein_coding Interval_370 chr1 4654192 4654424 + 0 NA Intergenic Intergenic 35095 ENSMUSG00000098104.1 ENSMUSG00000098104 ENSMUST00000182774 Gm6085 processed_pseudogene Interval_156842 chr8 60992267 60993851 + 0 NA promoter-TSS (ENSMUSG00000031644.19) protein_coding-promoter-TSS (ENSMUSG00000031644.19) -206 ENSMUSG00000031644.19 ENSMUSG00000031644 ENSMUST00000142601 Nek1 protein_coding Interval_102362 chr3 22181166 22181420 + 0 NA intron (ENSMUSG00000027630.13, intron 3 of 3) protein_coding-intron (ENSMUSG00000027630.13, intron 3 of 15) -70081 ENSMUSG00000087775.1 ENSMUSG00000087775 ENSMUST00000157150 Rprl2 ribozyme Interval_20942 chr10 122553056 122553595 + 0 NA Intergenic Intergenic -6827 ENSMUSG00000112873.1 ENSMUSG00000112873 ENSMUST00000218285 Gm48877 antisense Interval_26907 chr11 61487563 61488198 + 0 NA TTS (ENSMUSG00000001034.17) protein_coding-TTS (ENSMUSG00000001034.17) 2389 ENSMUSG00000042436.12 ENSMUSG00000042436 ENSMUST00000126308 Mfap4 protein_coding Interval_970 chr1 13538858 13539087 + 0 NA Intergenic Intergenic 50903 ENSMUSG00000025935.10 ENSMUSG00000025935 ENSMUST00000188377 Tram1 protein_coding Interval_7629 chr1 132623413 132624927 + 0 NA exon (ENSMUSG00000026442.14, exon 1 of 3) protein_coding-exon (ENSMUSG00000026442.14, exon 1 of 3) 342 ENSMUSG00000026442.14 ENSMUSG00000026442 ENSMUST00000189219 Nfasc protein_coding Interval_54044 chr14 64708486 64708824 + 0 NA exon (ENSMUSG00000060012.9, exon 3 of 3) protein_coding-exon (ENSMUSG00000060012.9, exon 3 of 3) -45263 ENSMUSG00000064442.1 ENSMUSG00000064442 ENSMUST00000082508 Gm26225 snoRNA Interval_39975 chr12 100192181 100193541 + 0 NA TTS (ENSMUSG00000072884.10) processed_transcript-TTS (ENSMUSG00000072884.10) 4893 ENSMUSG00000072884.10 ENSMUSG00000072884 ENSMUST00000138678 Gm10433 processed_transcript Interval_54660 chr14 73000136 73001401 + 0 NA Intergenic Intergenic -20864 ENSMUSG00000115085.1 ENSMUSG00000115085 ENSMUST00000226196 Gm9198 processed_pseudogene Interval_42029 chr13 6631512 6632457 + 0 NA intron (ENSMUSG00000021196.14, intron 2 of 15) protein_coding-intron (ENSMUSG00000021196.14, intron 2 of 21) 30910 ENSMUSG00000068324.5 ENSMUSG00000068324 ENSMUST00000089635 Gm10029 processed_pseudogene Interval_151512 chr7 123190238 123190802 + 0 NA intron (ENSMUSG00000052707.8, intron 9 of 11) protein_coding-intron (ENSMUSG00000052707.8, intron 21 of 23) 18874 ENSMUSG00000052707.8 ENSMUSG00000052707 ENSMUST00000206126 Tnrc6a protein_coding Interval_43504 chr13 32000069 32000305 + 0 NA intron (ENSMUSG00000038372.14, intron 7 of 10) protein_coding-intron (ENSMUSG00000038372.14, intron 7 of 10) 29101 ENSMUSG00000113935.1 ENSMUSG00000113935 ENSMUST00000221737 Gm35732 antisense Interval_171364 chr9 117071865 117073254 + 0 NA intron (ENSMUSG00000039607.17, intron 4 of 15) protein_coding-intron (ENSMUSG00000039607.17, intron 2 of 12) 7032 ENSMUSG00000092516.1 ENSMUSG00000092516 ENSMUST00000174520 Gm20397 processed_pseudogene Interval_113585 chr4 56858431 56859727 + 0 NA intron (ENSMUSG00000038816.14, intron 1 of 11) protein_coding-intron (ENSMUSG00000038816.14, intron 1 of 18) -20495 ENSMUSG00000038816.14 ENSMUSG00000038816 ENSMUST00000132764 Ctnnal1 protein_coding Interval_13980 chr10 25249675 25250626 + 0 NA intron (ENSMUSG00000039166.16, intron 5 of 7) protein_coding-intron (ENSMUSG00000039166.16, intron 5 of 7) -1350 ENSMUSG00000112371.1 ENSMUSG00000112371 ENSMUST00000219066 Gm7791 processed_pseudogene Interval_550 chr1 7206022 7207430 + 0 NA Intergenic Intergenic -16807 ENSMUSG00000103709.1 ENSMUSG00000103709 ENSMUST00000195269 Nras-ps2 processed_pseudogene Interval_68107 chr16 65154074 65154376 + 0 NA Intergenic Intergenic 15945 ENSMUSG00000089178.1 ENSMUSG00000089178 ENSMUST00000158553 Gm22429 snoRNA Interval_19611 chr10 105772338 105773310 + 0 NA intron (ENSMUSG00000036009.16, intron 10 of 12) protein_coding-intron (ENSMUSG00000036009.16, intron 9 of 11) 31373 ENSMUSG00000084545.1 ENSMUSG00000084545 ENSMUST00000122596 n-R5s80 rRNA Interval_22304 chr11 8630050 8630337 + 0 NA intron (ENSMUSG00000020422.14, intron 1 of 30) protein_coding-intron (ENSMUSG00000020422.14, intron 1 of 30) 34488 ENSMUSG00000020422.14 ENSMUSG00000020422 ENSMUST00000134823 Tns3 protein_coding Interval_22221 chr11 7265760 7266180 + 0 NA Intergenic Intergenic 24404 ENSMUSG00000087637.1 ENSMUSG00000087637 ENSMUST00000149481 Gm11986 lincRNA Interval_56049 chr14 105145157 105145364 + 0 NA intron (ENSMUSG00000022119.15, intron 9 of 21) protein_coding-intron (ENSMUSG00000022119.15, intron 9 of 21) -14923 ENSMUSG00000022119.15 ENSMUSG00000022119 ENSMUST00000163499 Rbm26 protein_coding Interval_168360 chr9 79595358 79595817 + 0 NA Intergenic Intergenic 21779 ENSMUSG00000111207.1 ENSMUSG00000111207 ENSMUST00000216602 Gm8125 processed_pseudogene Interval_111375 chr4 20000782 20001334 + 0 NA intron (ENSMUSG00000086332.2, intron 2 of 4) transcribed_unitary_pseudogene-intron (ENSMUSG00000086332.2, intron 2 of 4) -6880 ENSMUSG00000073988.13 ENSMUSG00000073988 ENSMUST00000098244 Ttpa protein_coding Interval_130902 chr5 133812821 133813134 + 0 NA Intergenic Intergenic 29542 ENSMUSG00000106067.1 ENSMUSG00000106067 ENSMUST00000198842 Gm7902 processed_pseudogene Interval_53543 chr14 58774682 58775677 + 0 NA Intergenic Intergenic 104136 ENSMUSG00000098157.1 ENSMUSG00000098157 ENSMUST00000182482 Gm9022 transcribed_processed_pseudogene Interval_132912 chr5 148709118 148709314 + 0 NA Intergenic Intergenic -2250 ENSMUSG00000106733.1 ENSMUSG00000106733 ENSMUST00000200820 Gm36186 lincRNA Interval_139847 chr6 111051591 111051863 + 0 NA intron (ENSMUSG00000056755.13, intron 3 of 9) protein_coding-intron (ENSMUSG00000056755.13, intron 2 of 10) 313377 ENSMUSG00000092603.1 ENSMUSG00000092603 ENSMUST00000174010 Gm20386 processed_pseudogene Interval_125049 chr5 64107657 64109787 + 0 NA TTS (ENSMUSG00000029171.12) protein_coding-TTS (ENSMUSG00000029171.12) -1220 ENSMUSG00000093780.1 ENSMUSG00000093780 ENSMUST00000177427 Gm22395 miRNA Interval_71810 chr17 26232814 26233576 + 0 NA TTS (ENSMUSG00000117622.1) processed_pseudogene-TTS (ENSMUSG00000117622.1) 631 ENSMUSG00000117622.1 ENSMUSG00000117622 ENSMUST00000234141 Gm20026 processed_pseudogene Interval_124161 chr5 38752592 38753307 + 0 NA intron (ENSMUSG00000039315.15, intron 8 of 18) protein_coding-intron (ENSMUSG00000039315.15, intron 8 of 18) 16965 ENSMUSG00000079528.9 ENSMUSG00000079528 ENSMUST00000177682 Clnkos antisense Interval_86772 chr19 43741502 43741828 + 0 NA intron (ENSMUSG00000040018.9, intron 6 of 8) protein_coding-intron (ENSMUSG00000040018.9, intron 6 of 8) -1563 ENSMUSG00000040018.9 ENSMUSG00000040018 ENSMUST00000129242 Cox15 protein_coding Interval_122779 chr5 25383487 25383910 + 0 NA exon (ENSMUSG00000038056.15, exon 9 of 9) protein_coding-exon (ENSMUSG00000038056.15, exon 9 of 9) -7910 ENSMUSG00000092344.1 ENSMUSG00000092344 ENSMUST00000172726 Hspe1-ps3 processed_pseudogene Interval_147765 chr7 73442292 73442753 + 0 NA intron (ENSMUSG00000078671.11, intron 1 of 4) protein_coding-intron (ENSMUSG00000078671.11, intron 36 of 38) 1729 ENSMUSG00000078671.11 ENSMUSG00000078671 ENSMUST00000200218 Chd2 protein_coding Interval_126668 chr5 91945527 91946369 + 0 NA Intergenic Intergenic 13014 ENSMUSG00000107200.1 ENSMUSG00000107200 ENSMUST00000202883 Gm43039 TEC Interval_18170 chr10 83206904 83207992 + 0 NA Intergenic Intergenic -49321 ENSMUSG00000088270.1 ENSMUSG00000088270 ENSMUST00000157645 Gm23122 snRNA Interval_78151 chr18 9400930 9402100 + 0 NA intron (ENSMUSG00000024286.8, intron 1 of 7) protein_coding-intron (ENSMUSG00000024286.8, intron 1 of 9) 35335 ENSMUSG00000117448.1 ENSMUSG00000117448 ENSMUST00000234877 Gm50055 TEC Interval_45976 chr13 59728285 59728695 + 0 NA exon (ENSMUSG00000043986.5, exon 4 of 4) protein_coding-exon (ENSMUSG00000043986.5, exon 4 of 4) 1766 ENSMUSG00000114903.1 ENSMUSG00000114903 ENSMUST00000224350 Gm46419 lincRNA Interval_49304 chr13 110461998 110462244 + 0 NA Intergenic Intergenic 66109 ENSMUSG00000021701.8 ENSMUSG00000021701 ENSMUST00000225156 Plk2 protein_coding Interval_157422 chr8 70258476 70258661 + 0 NA TTS (ENSMUSG00000036054.15) protein_coding-TTS (ENSMUSG00000036054.15) 24342 ENSMUSG00000036054.15 ENSMUSG00000036054 ENSMUST00000129402 Sugp2 protein_coding Interval_60025 chr15 64046941 64047702 + 0 NA intron (ENSMUSG00000022378.14, intron 1 of 12) protein_coding-intron (ENSMUSG00000022378.14, intron 1 of 11) 13157 ENSMUSG00000022378.14 ENSMUSG00000022378 ENSMUST00000226129 Fam49b protein_coding Interval_70098 chr17 5303422 5303635 + 0 NA intron (ENSMUSG00000069729.14, intron 8 of 19) protein_coding-intron (ENSMUSG00000069729.14, intron 8 of 18) -85235 ENSMUSG00000101133.1 ENSMUSG00000101133 ENSMUST00000190732 Gm29050 antisense Interval_20832 chr10 121375629 121377204 + 0 NA promoter-TSS (ENSMUSG00000034707.7) protein_coding-promoter-TSS (ENSMUSG00000034707.7) -658 ENSMUSG00000034707.7 ENSMUSG00000034707 ENSMUST00000219216 Gns protein_coding Interval_61281 chr15 80508268 80508614 + 0 NA intron (ENSMUSG00000050439.7, intron 5 of 6) protein_coding-intron (ENSMUSG00000050439.7, intron 4 of 5) 32549 ENSMUSG00000116345.1 ENSMUSG00000116345 ENSMUST00000230279 Gm19141 processed_pseudogene Interval_103241 chr3 37335537 37335885 + 0 NA exon (ENSMUSG00000054779.5, exon 4 of 4) antisense-exon (ENSMUSG00000054779.5, exon 4 of 4) -3306 ENSMUSG00000105063.1 ENSMUSG00000105063 ENSMUST00000198874 Gm43488 TEC Interval_111293 chr4 17451040 17451577 + 0 NA Intergenic Intergenic 108711 ENSMUSG00000089218.1 ENSMUSG00000089218 ENSMUST00000158593 Gm23384 snRNA Interval_104298 chr3 63050548 63052457 + 0 NA Intergenic Intergenic -100715 ENSMUSG00000089175.1 ENSMUSG00000089175 ENSMUST00000158550 Gm22433 scaRNA Interval_6186 chr1 100509775 100510271 + 0 NA Intergenic Intergenic -87052 ENSMUSG00000099427.1 ENSMUSG00000099427 ENSMUST00000185791 Gm18700 processed_pseudogene Interval_10921 chr1 177022555 177023057 + 0 NA exon (ENSMUSG00000019699.16, exon 14 of 14) protein_coding-exon (ENSMUSG00000019699.16, exon 14 of 14) 14130 ENSMUSG00000104391.1 ENSMUSG00000104391 ENSMUST00000192402 Gm37960 TEC Interval_65845 chr16 29747792 29748561 + 0 NA Intergenic Intergenic 6136 ENSMUSG00000116814.1 ENSMUSG00000116814 ENSMUST00000232037 Gm49636 lincRNA Interval_33113 chr11 114531035 114532783 + 0 NA Intergenic Intergenic -83049 ENSMUSG00000062391.3 ENSMUSG00000062391 ENSMUST00000141088 4932435O22Rik lincRNA Interval_77591 chr17 92613397 92613630 + 0 NA Intergenic Intergenic -12987 ENSMUSG00000117354.1 ENSMUSG00000117354 ENSMUST00000234942 Gm49995 processed_pseudogene Interval_171773 chr9 120948040 120948334 + 0 NA intron (ENSMUSG00000006932.17, intron 1 of 4) protein_coding-intron (ENSMUSG00000006932.17, intron 1 of 14) -6899 ENSMUSG00000106193.1 ENSMUSG00000106193 ENSMUST00000198187 Mir7090 miRNA Interval_65567 chr16 23383758 23384647 + 0 NA Intergenic Intergenic 39533 ENSMUSG00000084439.1 ENSMUSG00000084439 ENSMUST00000122490 Gm23430 misc_RNA Interval_46293 chr13 63479876 63480437 + 0 NA intron (ENSMUSG00000021461.17, intron 1 of 6) protein_coding-intron (ENSMUSG00000021461.17, intron 1 of 6) -32891 ENSMUSG00000089868.1 ENSMUSG00000089868 ENSMUST00000161714 Gm16134 processed_pseudogene Interval_72009 chr17 27563867 27566279 + 0 NA promoter-TSS (ENSMUSG00000062753.14) protein_coding-promoter-TSS (ENSMUSG00000062753.14) -39 ENSMUSG00000116884.1 ENSMUSG00000116884 ENSMUST00000231648 C130040N14Rik antisense Interval_83731 chr19 4012293 4013321 + 0 NA promoter-TSS (ENSMUSG00000037916.14) protein_coding-promoter-TSS (ENSMUSG00000037916.14) -113 ENSMUSG00000037916.14 ENSMUSG00000037916 ENSMUST00000149482 Ndufv1 protein_coding Interval_78068 chr18 7644532 7645095 + 0 NA Intergenic Intergenic -17959 ENSMUSG00000057440.8 ENSMUSG00000057440 ENSMUST00000233992 Mpp7 protein_coding Interval_124277 chr5 43406841 43407791 + 0 NA Intergenic Intergenic 30869 ENSMUSG00000107244.1 ENSMUSG00000107244 ENSMUST00000201312 Gm43699 lincRNA Interval_136707 chr6 58204366 58204588 + 0 NA Intergenic Intergenic -1208 ENSMUSG00000093731.1 ENSMUSG00000093731 ENSMUST00000176901 Vmn1r-ps18 unprocessed_pseudogene Interval_18518 chr10 86853169 86853784 + 0 NA intron (ENSMUSG00000035459.18, intron 21 of 27) protein_coding-intron (ENSMUSG00000035459.18, intron 61 of 68) 14382 ENSMUSG00000089959.1 ENSMUSG00000089959 ENSMUST00000159445 Gm16268 antisense Interval_24854 chr11 40461991 40462222 + 0 NA Intergenic Intergenic 13571 ENSMUSG00000085588.1 ENSMUSG00000085588 ENSMUST00000123904 3110004A20Rik lincRNA Interval_158845 chr8 87199725 87200010 + 0 NA promoter-TSS (ENSMUSG00000099207.7) lincRNA-promoter-TSS (ENSMUSG00000099207.7) -17 ENSMUSG00000099207.7 ENSMUSG00000099207 ENSMUST00000184702 Gm10637 lincRNA Interval_140686 chr6 120579011 120580772 + 0 NA exon (ENSMUSG00000107580.1, exon 1 of 1) TEC-exon (ENSMUSG00000107580.1, exon 1 of 1) 285 ENSMUSG00000107580.1 ENSMUSG00000107580 ENSMUST00000204159 Gm44124 TEC Interval_82446 chr18 74061757 74062166 + 0 NA intron (ENSMUSG00000024558.12, intron 1 of 1) protein_coding-intron (ENSMUSG00000024558.12, intron 1 of 5) 2431 ENSMUSG00000024558.12 ENSMUSG00000024558 ENSMUST00000160601 Mapk4 protein_coding Interval_34416 chr12 3959683 3960868 + 0 NA TTS (ENSMUSG00000020660.6) protein_coding-TTS (ENSMUSG00000020660.6) 5305 ENSMUSG00000020660.6 ENSMUSG00000020660 ENSMUST00000220006 Pomc protein_coding Interval_48630 chr13 100738358 100738854 + 0 NA intron (ENSMUSG00000061474.11, intron 3 of 3) protein_coding-intron (ENSMUSG00000061474.11, intron 4 of 4) 5507 ENSMUSG00000061474.11 ENSMUSG00000061474 ENSMUST00000150113 Mrps36 protein_coding Interval_133036 chr5 149437316 149437568 + 0 NA Intergenic Intergenic -2264 ENSMUSG00000029660.10 ENSMUSG00000029660 ENSMUST00000201610 Tex26 protein_coding Interval_54222 chr14 66489079 66489657 + 0 NA Intergenic Intergenic 102327 ENSMUSG00000088737.1 ENSMUSG00000088737 ENSMUST00000158112 Gm23899 rRNA Interval_144528 chr7 25710098 25711824 + 0 NA TTS (ENSMUSG00000002608.8) protein_coding-TTS (ENSMUSG00000002608.8) 8030 ENSMUSG00000002608.8 ENSMUSG00000002608 ENSMUST00000140847 Ccdc97 protein_coding Interval_117976 chr4 127418852 127419968 + 0 NA Intergenic Intergenic -10612 ENSMUSG00000079998.2 ENSMUSG00000079998 ENSMUST00000116114 Gm12947 processed_pseudogene Interval_30098 chr11 89159373 89159754 + 0 NA Intergenic Intergenic -22797 ENSMUSG00000089485.1 ENSMUSG00000089485 ENSMUST00000158860 Gm24734 misc_RNA Interval_84996 chr19 21066199 21066854 + 0 NA Intergenic Intergenic -38184 ENSMUSG00000118047.1 ENSMUSG00000118047 ENSMUST00000237768 4930554I06Rik lincRNA Interval_114950 chr4 87503170 87503510 + 0 NA Intergenic Intergenic 71068 ENSMUSG00000093065.1 ENSMUSG00000093065 ENSMUST00000175324 Gm23154 miRNA Interval_131521 chr5 137706838 137708634 + 0 NA Intergenic Intergenic 14004 ENSMUSG00000082088.1 ENSMUSG00000082088 ENSMUST00000119241 Gm15753 unprocessed_pseudogene Interval_38865 chr12 83501874 83502695 + 0 NA Intergenic Intergenic -2798 ENSMUSG00000113664.1 ENSMUSG00000113664 ENSMUST00000221402 Gm47184 processed_pseudogene Interval_161709 chr8 122225449 122225857 + 0 NA intron (ENSMUSG00000092329.1, intron 1 of 15) protein_coding-intron (ENSMUSG00000092329.1, intron 1 of 15) -32967 ENSMUSG00000043903.4 ENSMUSG00000043903 ENSMUST00000055537 Zfp469 protein_coding Interval_66896 chr16 38392179 38393255 + 0 NA Intergenic Intergenic 20719 ENSMUSG00000022803.12 ENSMUSG00000022803 ENSMUST00000146342 Popdc2 protein_coding Interval_125003 chr5 63707275 63708194 + 0 NA intron (ENSMUSG00000090061.9, intron 2 of 6) protein_coding-intron (ENSMUSG00000090061.9, intron 1 of 6) 13680 ENSMUSG00000090138.2 ENSMUSG00000090138 ENSMUST00000161710 Gm3687 processed_pseudogene Interval_168000 chr9 75347525 75348452 + 0 NA exon (ENSMUSG00000032191.6, exon 1 of 2) protein_coding-exon (ENSMUSG00000032191.6, exon 1 of 2) 230 ENSMUSG00000032191.6 ENSMUSG00000032191 ENSMUST00000034709 Bcl2l10 protein_coding Interval_126417 chr5 88304153 88304639 + 0 NA Intergenic Intergenic -12916 ENSMUSG00000064156.8 ENSMUSG00000064156 ENSMUST00000170832 Prol1 protein_coding Interval_80587 chr18 44450009 44450243 + 0 NA intron (ENSMUSG00000071856.10, intron 12 of 16) protein_coding-intron (ENSMUSG00000071856.10, intron 14 of 18) 69624 ENSMUSG00000024472.9 ENSMUSG00000024472 ENSMUST00000025350 Dcp2 protein_coding Interval_129661 chr5 121592807 121594259 + 0 NA promoter-TSS (ENSMUSG00000029455.14) protein_coding-promoter-TSS (ENSMUSG00000029455.14) -162 ENSMUSG00000106590.1 ENSMUSG00000106590 ENSMUST00000198656 Gm42879 TEC Interval_117823 chr4 126436214 126436433 + 0 NA exon (ENSMUSG00000041530.17, exon 19 of 19) protein_coding-exon (ENSMUSG00000041530.17, exon 19 of 19) -31988 ENSMUSG00000028842.15 ENSMUSG00000028842 ENSMUST00000123233 Ago3 protein_coding Interval_163897 chr9 27884331 27886137 + 0 NA intron (ENSMUSG00000062257.13, intron 1 of 7) protein_coding-intron (ENSMUSG00000062257.13, intron 1 of 7) 94087 ENSMUSG00000062257.13 ENSMUSG00000062257 ENSMUST00000126845 Opcml protein_coding Interval_17098 chr10 71342405 71342622 + 0 NA intron (ENSMUSG00000037710.8, intron 1 of 2) protein_coding-intron (ENSMUSG00000037710.8, intron 1 of 2) 2441 ENSMUSG00000037710.8 ENSMUSG00000037710 ENSMUST00000045887 Cisd1 protein_coding Interval_158012 chr8 78012942 78013759 + 0 NA Intergenic Intergenic -30660 ENSMUSG00000110382.1 ENSMUSG00000110382 ENSMUST00000209933 Gm29895 lincRNA Interval_103612 chr3 51181938 51182672 + 0 NA Intergenic Intergenic -49612 ENSMUSG00000103313.1 ENSMUSG00000103313 ENSMUST00000195382 Gm38357 TEC Interval_52883 chr14 51793248 51794651 + 0 NA promoter-TSS (ENSMUSG00000092107.1) unprocessed_pseudogene-promoter-TSS (ENSMUSG00000092107.1) -196 ENSMUSG00000092107.1 ENSMUSG00000092107 ENSMUST00000166834 Ear-ps4 unprocessed_pseudogene Interval_37577 chr12 70035083 70035439 + 0 NA promoter-TSS (ENSMUSG00000021068.17) protein_coding-promoter-TSS (ENSMUSG00000021068.17) -40369 ENSMUSG00000089153.1 ENSMUSG00000089153 ENSMUST00000158528 Gm23579 snRNA Interval_78444 chr18 12886377 12887617 + 0 NA intron (ENSMUSG00000044252.18, intron 13 of 14) protein_coding-intron (ENSMUSG00000044252.18, intron 13 of 27) -11430 ENSMUSG00000080866.1 ENSMUSG00000080866 ENSMUST00000118252 Gm5687 processed_pseudogene Interval_5105 chr1 85699299 85699545 + 0 NA intron (ENSMUSG00000026222.16, intron 14 of 16) protein_coding-intron (ENSMUSG00000026222.16, intron 14 of 19) 24540 ENSMUSG00000064414.1 ENSMUSG00000064414 ENSMUST00000082480 n-R5s215 rRNA Interval_108190 chr3 122352539 122353456 + 0 NA intron (ENSMUSG00000028121.8, intron 6 of 6) protein_coding-intron (ENSMUSG00000028121.8, intron 6 of 6) 38814 ENSMUSG00000104554.1 ENSMUSG00000104554 ENSMUST00000198222 Gm4610 antisense Interval_132739 chr5 147499001 147499666 + 0 NA intron (ENSMUSG00000029647.15, intron 4 of 16) protein_coding-intron (ENSMUSG00000029647.15, intron 5 of 18) 59943 ENSMUSG00000107085.1 ENSMUSG00000107085 ENSMUST00000202594 Gm42883 processed_pseudogene Interval_128589 chr5 114190108 114191085 + 0 NA TTS (ENSMUSG00000042010.16) protein_coding-TTS (ENSMUSG00000042010.16) 14690 ENSMUSG00000042010.16 ENSMUSG00000042010 ENSMUST00000142489 Acacb protein_coding Interval_151085 chr7 118436891 118437535 + 0 NA intron (ENSMUSG00000058420.8, intron 2 of 2) protein_coding-intron (ENSMUSG00000058420.8, intron 3 of 7) 10843 ENSMUSG00000058420.8 ENSMUSG00000058420 ENSMUST00000207650 Syt17 protein_coding Interval_168060 chr9 75759227 75760296 + 0 NA Intergenic Intergenic -65102 ENSMUSG00000098232.1 ENSMUSG00000098232 ENSMUST00000182463 Gm3671 processed_pseudogene Interval_150786 chr7 114562432 114563480 + 0 NA promoter-TSS (ENSMUSG00000030670.16) protein_coding-promoter-TSS (ENSMUSG00000030670.16) -66 ENSMUSG00000030670.16 ENSMUSG00000030670 ENSMUST00000147428 Cyp2r1 protein_coding Interval_22052 chr11 6012925 6013533 + 0 NA exon (ENSMUSG00000057897.14, exon 3 of 3) protein_coding-exon (ENSMUSG00000057897.14, exon 3 of 3) -29091 ENSMUSG00000057897.14 ENSMUSG00000057897 ENSMUST00000129098 Camk2b protein_coding Interval_98814 chr2 155229838 155230025 + 0 NA Intergenic Intergenic -6677 ENSMUSG00000047459.14 ENSMUSG00000047459 ENSMUST00000135831 Dynlrb1 protein_coding Interval_30038 chr11 88830056 88831058 + 0 NA TTS (ENSMUSG00000018428.15) protein_coding-TTS (ENSMUSG00000018428.15) 10983 ENSMUSG00000018428.15 ENSMUSG00000018428 ENSMUST00000153787 Akap1 protein_coding Interval_6643 chr1 118486715 118487798 + 0 NA intron (ENSMUSG00000064302.13, intron 1 of 32) protein_coding-intron (ENSMUSG00000064302.13, intron 8 of 39) -7665 ENSMUSG00000100770.1 ENSMUSG00000100770 ENSMUST00000190678 Gm28466 processed_pseudogene Interval_51322 chr14 26393181 26393510 + 0 NA intron (ENSMUSG00000090104.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000021874.12, intron 4 of 7) 4146 ENSMUSG00000090104.1 ENSMUSG00000090104 ENSMUST00000160089 Slmapos2 lincRNA Interval_127110 chr5 100350952 100351309 + 0 NA intron (ENSMUSG00000085915.1, intron 1 of 4) unprocessed_pseudogene-intron (ENSMUSG00000085915.1, intron 1 of 4) 3989 ENSMUSG00000085915.1 ENSMUSG00000085915 ENSMUST00000150506 Gm8091 unprocessed_pseudogene Interval_129929 chr5 123116201 123117694 + 0 NA TTS (ENSMUSG00000054434.14) protein_coding-TTS (ENSMUSG00000054434.14) 6251 ENSMUSG00000104951.1 ENSMUSG00000104951 ENSMUST00000200411 Gm43413 TEC Interval_92248 chr2 57315507 57316490 + 0 NA intron (ENSMUSG00000026827.12, intron 6 of 16) protein_coding-intron (ENSMUSG00000026827.12, intron 6 of 16) -40312 ENSMUSG00000084292.1 ENSMUSG00000084292 ENSMUST00000118714 Gm13535 processed_pseudogene Interval_24411 chr11 33070493 33070805 + 0 NA intron (ENSMUSG00000087318.1, intron 1 of 3) lincRNA-intron (ENSMUSG00000087318.1, intron 1 of 3) 2098 ENSMUSG00000087318.1 ENSMUSG00000087318 ENSMUST00000147896 Gm12114 lincRNA Interval_167155 chr9 65679228 65679762 + 0 NA intron (ENSMUSG00000040652.16, intron 1 of 5) protein_coding-intron (ENSMUSG00000040652.16, intron 1 of 5) 9783 ENSMUSG00000040652.16 ENSMUSG00000040652 ENSMUST00000128664 Oaz2 protein_coding Interval_39880 chr12 99342806 99344580 + 0 NA intron (ENSMUSG00000033713.12, intron 2 of 5) protein_coding-intron (ENSMUSG00000033713.12, intron 2 of 5) 2539 ENSMUSG00000033731.9 ENSMUSG00000033731 ENSMUST00000046994 3300002A11Rik antisense Interval_118155 chr4 129266108 129267145 + 0 NA Intergenic Intergenic 4661 ENSMUSG00000087575.7 ENSMUSG00000087575 ENSMUST00000150171 Gm12976 lincRNA Interval_170984 chr9 113494861 113495106 + 0 NA Intergenic Intergenic 13372 ENSMUSG00000109890.2 ENSMUSG00000109890 ENSMUST00000209716 AU023762 lincRNA Interval_169898 chr9 102800490 102800783 + 0 NA Intergenic Intergenic 20314 ENSMUSG00000111395.1 ENSMUSG00000111395 ENSMUST00000214802 Gm18655 processed_pseudogene Interval_806 chr1 11519378 11519635 + 0 NA TTS (ENSMUSG00000057715.13) protein_coding-TTS (ENSMUSG00000057715.13) -59800 ENSMUSG00000057715.13 ENSMUSG00000057715 ENSMUST00000191437 A830018L16Rik protein_coding Interval_167800 chr9 72778270 72780324 + 0 NA Intergenic Intergenic -3072 ENSMUSG00000098294.1 ENSMUSG00000098294 ENSMUST00000184673 Gm27204 lincRNA Interval_119992 chr4 141272964 141273892 + 0 NA Intergenic Intergenic -5011 ENSMUSG00000085395.1 ENSMUSG00000085395 ENSMUST00000142429 Gm13056 lincRNA Interval_72579 chr17 30800206 30801247 + 0 NA intron (ENSMUSG00000033826.10, intron 75 of 90) protein_coding-intron (ENSMUSG00000033826.10, intron 77 of 92) -18597 ENSMUSG00000094785.1 ENSMUSG00000094785 ENSMUST00000083205 Gm24661 snRNA Interval_123632 chr5 33995601 33998478 + 0 NA exon (ENSMUSG00000048142.9, exon 1 of 3) protein_coding-exon (ENSMUSG00000048142.9, exon 1 of 3) -2724 ENSMUSG00000048142.9 ENSMUSG00000048142 ENSMUST00000201041 Nat8l protein_coding Interval_3403 chr1 57995602 57996663 + 0 NA exon (ENSMUSG00000026039.9, exon 1 of 9) protein_coding-exon (ENSMUSG00000026039.9, exon 1 of 9) -26584 ENSMUSG00000026039.9 ENSMUSG00000026039 ENSMUST00000190746 Sgo2a protein_coding Interval_87672 chr19 54170375 54172199 + 0 NA Intergenic Intergenic -27104 ENSMUSG00000118324.1 ENSMUSG00000118324 ENSMUST00000237525 Gm50187 TEC Interval_142282 chr6 140443491 140443864 + 0 NA intron (ENSMUSG00000030231.11, intron 1 of 9) protein_coding-intron (ENSMUSG00000030231.11, intron 3 of 30) 23506 ENSMUSG00000107891.1 ENSMUSG00000107891 ENSMUST00000204085 Gm5051 processed_pseudogene Interval_119923 chr4 140957926 140958265 + 0 NA promoter-TSS (ENSMUSG00000087698.1) antisense-promoter-TSS (ENSMUSG00000087698.1) -193 ENSMUSG00000087698.1 ENSMUSG00000087698 ENSMUST00000140501 Gm13031 antisense Interval_2454 chr1 39477999 39479113 + 0 NA exon (ENSMUSG00000003134.10, exon 1 of 20) protein_coding-exon (ENSMUSG00000003134.10, exon 1 of 20) -40977 ENSMUSG00000104827.1 ENSMUSG00000104827 ENSMUST00000197298 Gm24826 snoRNA Interval_141397 chr6 128010391 128011771 + 0 NA intron (ENSMUSG00000030352.15, intron 2 of 2) protein_coding-intron (ENSMUSG00000030352.15, intron 3 of 8) 23924 ENSMUSG00000030352.15 ENSMUSG00000030352 ENSMUST00000127075 Tspan9 protein_coding Interval_74493 chr17 51906212 51906435 + 0 NA intron (ENSMUSG00000117175.1, intron 2 of 2) lincRNA-intron (ENSMUSG00000117175.1, intron 2 of 2) 23596 ENSMUSG00000117175.1 ENSMUSG00000117175 ENSMUST00000233779 Gm20098 lincRNA Interval_128321 chr5 112531821 112532523 + 0 NA intron (ENSMUSG00000058153.15, intron 1 of 14) protein_coding-intron (ENSMUSG00000058153.15, intron 1 of 16) 44696 ENSMUSG00000058153.15 ENSMUSG00000058153 ENSMUST00000212758 Sez6l protein_coding Interval_3099 chr1 53313163 53314126 + 0 NA promoter-TSS (ENSMUSG00000026096.14) protein_coding-promoter-TSS (ENSMUSG00000026096.14) -13 ENSMUSG00000026096.14 ENSMUSG00000026096 ENSMUST00000150115 Osgepl1 protein_coding Interval_68928 chr16 89113674 89114102 + 0 NA Intergenic Intergenic -26963 ENSMUSG00000068071.2 ENSMUSG00000068071 ENSMUST00000089101 Gm6358 protein_coding Interval_75384 chr17 66278754 66279006 + 0 NA Intergenic Intergenic 40632 ENSMUSG00000117010.1 ENSMUSG00000117010 ENSMUST00000233050 Gm49933 processed_pseudogene Interval_18785 chr10 90728063 90728995 + 0 NA promoter-TSS (ENSMUSG00000112153.1) sense_intronic-promoter-TSS (ENSMUSG00000112153.1) -431 ENSMUSG00000112153.1 ENSMUSG00000112153 ENSMUST00000218673 Gm47591 sense_intronic Interval_162165 chr8 125651442 125651949 + 0 NA Intergenic Intergenic -18123 ENSMUSG00000050930.5 ENSMUSG00000050930 ENSMUST00000053078 Map10 protein_coding Interval_167591 chr9 70847673 70848511 + 0 NA intron (ENSMUSG00000032207.10, intron 1 of 8) protein_coding-intron (ENSMUSG00000032207.10, intron 1 of 8) -4484 ENSMUSG00000096160.2 ENSMUSG00000096160 ENSMUST00000179930 Gm3436 processed_pseudogene Interval_123229 chr5 30768664 30768897 + 0 NA intron (ENSMUSG00000029168.14, intron 2 of 12) protein_coding-intron (ENSMUSG00000029168.14, intron 2 of 12) 9748 ENSMUSG00000106173.1 ENSMUSG00000106173 ENSMUST00000197835 Gm42764 sense_intronic Interval_118215 chr4 129570085 129571526 + 0 NA intron (ENSMUSG00000000409.14, intron 1 of 12) protein_coding-intron (ENSMUSG00000000409.14, intron 1 of 12) 6652 ENSMUSG00000050493.8 ENSMUSG00000050493 ENSMUST00000052835 Fam167b protein_coding Interval_83697 chr19 3796879 3797388 + 0 NA TTS (ENSMUSG00000045098.19) protein_coding-TTS (ENSMUSG00000045098.19) 25256 ENSMUSG00000117779.1 ENSMUSG00000117779 ENSMUST00000236552 Gm19209 processed_pseudogene Interval_73489 chr17 37979250 37979591 + 0 NA Intergenic Intergenic 4776 ENSMUSG00000092213.1 ENSMUSG00000092213 ENSMUST00000173947 Gm18522 processed_pseudogene Interval_68297 chr16 72702135 72702567 + 0 NA intron (ENSMUSG00000022883.11, intron 1 of 1) protein_coding-intron (ENSMUSG00000022883.11, intron 1 of 28) -273998 ENSMUSG00000022883.11 ENSMUSG00000022883 ENSMUST00000232432 Robo1 protein_coding Interval_173105 chrX 71800632 71800883 + 0 NA Intergenic Intergenic -2931 ENSMUSG00000083411.3 ENSMUSG00000083411 ENSMUST00000117119 Rpl30-ps10 processed_pseudogene Interval_149561 chr7 99579443 99580653 + 0 NA intron (ENSMUSG00000018909.15, intron 1 of 4) protein_coding-intron (ENSMUSG00000018909.15, intron 1 of 14) -9208 ENSMUSG00000108850.1 ENSMUSG00000108850 ENSMUST00000207191 Gm44914 TEC Interval_79596 chr18 33932598 33934622 + 0 NA intron (ENSMUSG00000024376.7, intron 2 of 2) protein_coding-intron (ENSMUSG00000024376.7, intron 2 of 23) 73356 ENSMUSG00000024376.7 ENSMUSG00000024376 ENSMUST00000237971 Epb41l4a protein_coding Interval_145791 chr7 38300861 38301114 + 0 NA intron (ENSMUSG00000108749.1, intron 3 of 4) antisense-intron (ENSMUSG00000108749.1, intron 3 of 4) -4002 ENSMUSG00000101410.1 ENSMUSG00000101410 ENSMUST00000186086 Gm28581 unprocessed_pseudogene Interval_155126 chr8 26836146 26836676 + 0 NA intron (ENSMUSG00000100335.2, intron 2 of 3) lincRNA-intron (ENSMUSG00000100335.2, intron 1 of 2) 46284 ENSMUSG00000100335.2 ENSMUSG00000100335 ENSMUST00000210263 2310008N11Rik lincRNA Interval_637 chr1 9347240 9347716 + 0 NA Intergenic Intergenic 51209 ENSMUSG00000101571.2 ENSMUSG00000101571 ENSMUST00000040649 Gm6187 processed_pseudogene Interval_139705 chr6 107711350 107711692 + 0 NA Intergenic Intergenic 83747 ENSMUSG00000107496.1 ENSMUSG00000107496 ENSMUST00000203905 4933431M02Rik lincRNA Interval_46621 chr13 67683069 67684107 + 0 NA promoter-TSS (ENSMUSG00000048280.18) protein_coding-promoter-TSS (ENSMUSG00000048280.18) -93 ENSMUSG00000048280.18 ENSMUSG00000048280 ENSMUST00000223721 Zfp738 protein_coding Interval_174278 chrX 143058775 143059079 + 0 NA Intergenic Intergenic -40667 ENSMUSG00000085584.3 ENSMUSG00000085584 ENSMUST00000165829 Rtl9 protein_coding Interval_109027 chr3 135257037 135257239 + 0 NA intron (ENSMUSG00000045328.11, intron 38 of 45) protein_coding-intron (ENSMUSG00000045328.11, intron 38 of 45) -2104 ENSMUSG00000045328.11 ENSMUSG00000045328 ENSMUST00000199497 Cenpe protein_coding Interval_121130 chr4 153319127 153320502 + 0 NA Intergenic Intergenic 101638 ENSMUSG00000087454.1 ENSMUSG00000087454 ENSMUST00000126141 Gm13174 lincRNA Interval_151802 chr7 126754543 126755310 + 0 NA Intergenic Intergenic -4734 ENSMUSG00000063065.13 ENSMUSG00000063065 ENSMUST00000135649 Mapk3 protein_coding Interval_43030 chr13 23344695 23346459 + 0 NA intron (ENSMUSG00000087097.1, intron 2 of 3) antisense-intron (ENSMUSG00000087097.1, intron 2 of 3) 17633 ENSMUSG00000046351.11 ENSMUSG00000046351 ENSMUST00000223795 Zfp322a protein_coding Interval_139755 chr6 108410490 108411340 + 0 NA exon (ENSMUSG00000030102.11, exon 36 of 62) protein_coding-exon (ENSMUSG00000030102.11, exon 36 of 62) 23481 ENSMUSG00000030102.11 ENSMUSG00000030102 ENSMUST00000205005 Itpr1 protein_coding Interval_153279 chr7 143198251 143198832 + 0 NA intron (ENSMUSG00000009545.14, intron 10 of 11) protein_coding-intron (ENSMUSG00000009545.14, intron 10 of 15) -52826 ENSMUSG00000098857.1 ENSMUSG00000098857 ENSMUST00000183938 Gm27395 misc_RNA Interval_56487 chr14 119102540 119103947 + 0 NA intron (ENSMUSG00000087479.1, intron 3 of 6) processed_transcript-intron (ENSMUSG00000087479.1, intron 3 of 6) 4278 ENSMUSG00000087479.1 ENSMUSG00000087479 ENSMUST00000140488 Gm16835 processed_transcript Interval_99465 chr2 161557118 161557484 + 0 NA intron (ENSMUSG00000053141.16, intron 22 of 29) protein_coding-intron (ENSMUSG00000053141.16, intron 23 of 30) -43289 ENSMUSG00000100943.1 ENSMUSG00000100943 ENSMUST00000188874 Gm29229 processed_transcript Interval_112613 chr4 43564266 43564533 + 0 NA intron (ENSMUSG00000028466.15, intron 4 of 8) protein_coding-intron (ENSMUSG00000028466.15, intron 4 of 8) 1586 ENSMUSG00000028466.15 ENSMUSG00000028466 ENSMUST00000138623 Creb3 protein_coding Interval_59702 chr15 58730758 58732614 + 0 NA Intergenic Intergenic 50265 ENSMUSG00000093677.1 ENSMUSG00000093677 ENSMUST00000176387 Gm20712 sense_overlapping Interval_90877 chr2 33159402 33160499 + 0 NA intron (ENSMUSG00000038831.16, intron 11 of 17) protein_coding-intron (ENSMUSG00000038831.16, intron 10 of 16) -1780 ENSMUSG00000038831.16 ENSMUSG00000038831 ENSMUST00000113164 Ralgps1 protein_coding Interval_65600 chr16 23955012 23955301 + 0 NA Intergenic Intergenic 17224 ENSMUSG00000022508.5 ENSMUSG00000022508 ENSMUST00000135352 Bcl6 protein_coding Interval_158128 chr8 79045593 79046841 + 0 NA intron (ENSMUSG00000071064.15, intron 1 of 13) protein_coding-intron (ENSMUSG00000071064.15, intron 1 of 2) 17630 ENSMUSG00000071064.15 ENSMUSG00000071064 ENSMUST00000129613 Zfp827 protein_coding Interval_93292 chr2 71725160 71725958 + 0 NA intron (ENSMUSG00000064263.6, intron 2 of 3) lincRNA-intron (ENSMUSG00000064263.6, intron 2 of 3) 6142 ENSMUSG00000064263.6 ENSMUSG00000064263 ENSMUST00000079720 Platr26 lincRNA Interval_76790 chr17 84072847 84073174 + 0 NA Intergenic Intergenic -5650 ENSMUSG00000117571.1 ENSMUSG00000117571 ENSMUST00000234076 4933433H22Rik lincRNA Interval_150407 chr7 110199109 110199348 + 0 NA Intergenic Intergenic -22504 ENSMUSG00000031015.8 ENSMUSG00000031015 ENSMUST00000210513 Swap70 protein_coding Interval_6423 chr1 107822681 107823860 + 0 NA Intergenic Intergenic -66562 ENSMUSG00000096241.1 ENSMUSG00000096241 ENSMUST00000179841 Gm24267 snRNA Interval_154966 chr8 25341458 25341697 + 0 NA Intergenic Intergenic -35307 ENSMUSG00000110140.1 ENSMUSG00000110140 ENSMUST00000209774 5430421F17Rik lincRNA Interval_67231 chr16 44600962 44602347 + 0 NA Intergenic Intergenic -42757 ENSMUSG00000022687.12 ENSMUSG00000022687 ENSMUST00000114634 Boc protein_coding Interval_166670 chr9 61745002 61745989 + 0 NA Intergenic Intergenic -17589 ENSMUSG00000111739.1 ENSMUSG00000111739 ENSMUST00000213572 Gm47241 processed_pseudogene Interval_131074 chr5 134941590 134943134 + 0 NA TTS (ENSMUSG00000040557.14) protein_coding-TTS (ENSMUSG00000040557.14) 4572 ENSMUSG00000047501.3 ENSMUSG00000047501 ENSMUST00000051401 Cldn4 protein_coding Interval_18955 chr10 93363924 93366127 + 0 NA Intergenic Intergenic 29632 ENSMUSG00000110647.2 ENSMUSG00000110647 ENSMUST00000212186 Gm17745 lincRNA Interval_52080 chr14 35326316 35326536 + 0 NA intron (ENSMUSG00000041078.7, intron 8 of 15) protein_coding-intron (ENSMUSG00000041078.7, intron 8 of 15) -106988 ENSMUSG00000115826.1 ENSMUSG00000115826 ENSMUST00000227262 Gm49034 processed_pseudogene Interval_153128 chr7 141529573 141529798 + 0 NA exon (ENSMUSG00000025512.15, exon 4 of 11) protein_coding-exon (ENSMUSG00000025512.15, exon 4 of 11) 10147 ENSMUSG00000025512.15 ENSMUSG00000025512 ENSMUST00000133359 Chid1 protein_coding Interval_48514 chr13 99612283 99613167 + 0 NA Intergenic Intergenic -29249 ENSMUSG00000103545.1 ENSMUSG00000103545 ENSMUST00000193492 1700012J22Rik TEC Interval_121013 chr4 152212017 152213177 + 0 NA intron (ENSMUSG00000028937.14, intron 2 of 8) protein_coding-intron (ENSMUSG00000028937.14, intron 2 of 8) 8671 ENSMUSG00000085724.1 ENSMUSG00000085724 ENSMUST00000127752 Gm13096 sense_intronic Interval_153577 chr8 3495903 3496798 + 0 NA TTS (ENSMUSG00000047264.8) protein_coding-TTS (ENSMUSG00000047264.8) 1341 ENSMUSG00000047264.8 ENSMUSG00000047264 ENSMUST00000208423 Zfp358 protein_coding Interval_5771 chr1 91632796 91633942 + 0 NA Intergenic Intergenic 21963 ENSMUSG00000101705.1 ENSMUSG00000101705 ENSMUST00000188800 Gm28380 lincRNA Interval_100068 chr2 166905711 166907001 + 0 NA intron (ENSMUSG00000002718.14, intron 1 of 23) protein_coding-intron (ENSMUSG00000002718.14, intron 1 of 24) 316 ENSMUSG00000002718.14 ENSMUSG00000002718 ENSMUST00000129061 Cse1l protein_coding Interval_170445 chr9 108031611 108032514 + 0 NA promoter-TSS (ENSMUSG00000032594.11) protein_coding-promoter-TSS (ENSMUSG00000032594.11) -15454 ENSMUSG00000102540.1 ENSMUSG00000102540 ENSMUST00000191858 Gm38134 antisense Interval_55774 chr14 99897200 99897424 + 0 NA intron (ENSMUSG00000072294.5, intron 1 of 1) protein_coding-intron (ENSMUSG00000072294.5, intron 6 of 6) 3079 ENSMUSG00000072294.5 ENSMUSG00000072294 ENSMUST00000226544 Klf12 protein_coding Interval_149230 chr7 96492663 96495131 + 0 NA intron (ENSMUSG00000048078.16, intron 3 of 4) protein_coding-intron (ENSMUSG00000048078.16, intron 3 of 32) -57880 ENSMUSG00000082780.2 ENSMUSG00000082780 ENSMUST00000117302 Rps11-ps5 processed_pseudogene Interval_59158 chr15 45408822 45409039 + 0 NA Intergenic Intergenic 247479 ENSMUSG00000118565.1 ENSMUSG00000118565 ENSMUST00000238897 AC099642.1 processed_pseudogene Interval_58345 chr15 32920303 32922925 + 0 NA intron (ENSMUSG00000022261.6, intron 1 of 4) protein_coding-intron (ENSMUSG00000022261.6, intron 1 of 4) 891 ENSMUSG00000022261.6 ENSMUSG00000022261 ENSMUST00000022871 Sdc2 protein_coding Interval_75495 chr17 67386030 67387399 + 0 NA Intergenic Intergenic -164893 ENSMUSG00000087829.1 ENSMUSG00000087829 ENSMUST00000157204 Gm22277 misc_RNA Interval_32752 chr11 110354373 110355622 + 0 NA Intergenic Intergenic -17281 ENSMUSG00000018800.14 ENSMUSG00000018800 ENSMUST00000148984 Abca5 protein_coding Interval_4747 chr1 78265955 78266142 + 0 NA Intergenic Intergenic -44297 ENSMUSG00000032908.9 ENSMUSG00000032908 ENSMUST00000036172 Sgpp2 protein_coding Interval_149452 chr7 98691008 98691198 + 0 NA intron (ENSMUSG00000086477.3, intron 3 of 3) transcribed_unitary_pseudogene-intron (ENSMUSG00000086477.3, intron 3 of 3) -10456 ENSMUSG00000109101.1 ENSMUSG00000109101 ENSMUST00000207234 Gm45132 TEC Interval_138421 chr6 88037824 88038147 + 0 NA intron (ENSMUSG00000079477.9, intron 1 of 4) protein_coding-intron (ENSMUSG00000079477.9, intron 1 of 7) 4482 ENSMUSG00000108268.1 ENSMUSG00000108268 ENSMUST00000204735 Gm44187 TEC Interval_8417 chr1 139007522 139007731 + 0 NA intron (ENSMUSG00000056268.15, intron 1 of 20) protein_coding-intron (ENSMUSG00000056268.15, intron 1 of 20) -15557 ENSMUSG00000085361.2 ENSMUSG00000085361 ENSMUST00000140747 Gm16305 processed_pseudogene Interval_29387 chr11 83572802 83573080 + 0 NA TTS (ENSMUSG00000019122.8) protein_coding-TTS (ENSMUSG00000019122.8) 4201 ENSMUSG00000019122.8 ENSMUSG00000019122 ENSMUST00000136131 Ccl9 protein_coding Interval_54235 chr14 66761962 66763274 + 0 NA intron (ENSMUSG00000045875.13, intron 2 of 2) protein_coding-intron (ENSMUSG00000045875.13, intron 2 of 2) -21890 ENSMUSG00000057913.3 ENSMUSG00000057913 ENSMUST00000225384 Gm10032 lincRNA Interval_172879 chrX 52743890 52747153 + 0 NA promoter-TSS (ENSMUSG00000086173.7) processed_transcript-promoter-TSS (ENSMUSG00000086173.7) -561 ENSMUSG00000086173.7 ENSMUSG00000086173 ENSMUST00000154488 Kis2 processed_transcript Interval_150697 chr7 113491263 113492015 + 0 NA Intergenic Intergenic -22223 ENSMUSG00000030759.16 ENSMUSG00000030759 ENSMUST00000151133 Far1 protein_coding Interval_52356 chr14 45378987 45379643 + 0 NA exon (ENSMUSG00000053205.9, exon 11 of 11) protein_coding-exon (ENSMUSG00000053205.9, exon 11 of 11) 4128 ENSMUSG00000037722.8 ENSMUSG00000037722 ENSMUST00000226590 Gnpnat1 protein_coding Interval_116403 chr4 111510215 111510595 + 0 NA intron (ENSMUSG00000061298.14, intron 2 of 6) protein_coding-intron (ENSMUSG00000061298.14, intron 6 of 12) -56290 ENSMUSG00000061298.14 ENSMUSG00000061298 ENSMUST00000142460 Agbl4 protein_coding Interval_4441 chr1 74216397 74216696 + 0 NA Intergenic Intergenic 3733 ENSMUSG00000094768.1 ENSMUSG00000094768 ENSMUST00000101821 Gm25524 snRNA Interval_22400 chr11 9558244 9558536 + 0 NA intron (ENSMUSG00000004668.14, intron 48 of 61) protein_coding-intron (ENSMUSG00000004668.14, intron 48 of 61) 147233 ENSMUSG00000104137.1 ENSMUSG00000104137 ENSMUST00000195362 Gm36954 TEC Interval_81153 chr18 55030374 55032205 + 0 NA intron (ENSMUSG00000096948.2, intron 1 of 4) antisense-intron (ENSMUSG00000096948.2, intron 1 of 4) 41024 ENSMUSG00000096948.2 ENSMUSG00000096948 ENSMUST00000181765 Gm4221 antisense Interval_113982 chr4 62256825 62258189 + 0 NA Intergenic Intergenic -5055 ENSMUSG00000066152.11 ENSMUSG00000066152 ENSMUST00000107467 Slc31a2 protein_coding Interval_52764 chr14 49524860 49526104 + 0 NA intron (ENSMUSG00000021852.14, intron 1 of 2) protein_coding-intron (ENSMUSG00000021852.14, intron 1 of 7) -5313 ENSMUSG00000089416.1 ENSMUSG00000089416 ENSMUST00000158791 Gm22116 snRNA Interval_151629 chr7 125491056 125492296 + 0 NA promoter-TSS (ENSMUSG00000030750.13) protein_coding-promoter-TSS (ENSMUSG00000030750.13) -13117 ENSMUSG00000030750.13 ENSMUSG00000030750 ENSMUST00000149289 Nsmce1 protein_coding Interval_140232 chr6 115701345 115701876 + 0 NA Intergenic Intergenic 22222 ENSMUSG00000088358.1 ENSMUSG00000088358 ENSMUST00000157733 Gm24008 snoRNA Interval_47465 chr13 84809364 84809591 + 0 NA Intergenic Intergenic -118536 ENSMUSG00000098081.1 ENSMUSG00000098081 ENSMUST00000182391 Gm26913 processed_pseudogene Interval_94574 chr2 92374664 92375708 + 0 NA promoter-TSS (ENSMUSG00000027222.14) protein_coding-promoter-TSS (ENSMUSG00000027222.14) 510 ENSMUSG00000027222.14 ENSMUSG00000027222 ENSMUST00000148386 Pex16 protein_coding Interval_129326 chr5 119114246 119114493 + 0 NA exon (ENSMUSG00000100573.1, exon 4 of 4) lincRNA-exon (ENSMUSG00000100573.1, exon 4 of 4) 6135 ENSMUSG00000100573.1 ENSMUSG00000100573 ENSMUST00000190550 1700081H04Rik lincRNA Interval_93103 chr2 70226015 70226252 + 0 NA intron (ENSMUSG00000042064.13, intron 9 of 33) protein_coding-intron (ENSMUSG00000042064.13, intron 10 of 34) 143059 ENSMUSG00000042064.13 ENSMUSG00000042064 ENSMUST00000112241 Myo3b protein_coding Interval_114315 chr4 72543234 72543690 + 0 NA TTS (ENSMUSG00000083372.1) processed_pseudogene-TTS (ENSMUSG00000083372.1) 796 ENSMUSG00000083372.1 ENSMUSG00000083372 ENSMUST00000117763 Gm11235 processed_pseudogene Interval_54216 chr14 66343811 66345106 + 0 NA promoter-TSS (ENSMUSG00000022044.14) protein_coding-promoter-TSS (ENSMUSG00000022044.14) 162 ENSMUSG00000022044.14 ENSMUSG00000022044 ENSMUST00000147477 Stmn4 protein_coding Interval_67083 chr16 42760532 42760727 + 0 NA intron (ENSMUSG00000075070.6, intron 1 of 3) lincRNA-intron (ENSMUSG00000075070.6, intron 1 of 3) 96703 ENSMUSG00000116679.1 ENSMUSG00000116679 ENSMUST00000232064 Gm49739 processed_pseudogene Interval_149189 chr7 96151222 96151599 + 0 NA Intergenic Intergenic 52126 ENSMUSG00000108528.1 ENSMUSG00000108528 ENSMUST00000205708 Gm8319 processed_pseudogene Interval_57997 chr15 25925542 25925789 + 0 NA intron (ENSMUSG00000022270.16, intron 1 of 2) protein_coding-intron (ENSMUSG00000022270.16, intron 3 of 8) 15241 ENSMUSG00000022270.16 ENSMUSG00000022270 ENSMUST00000228306 Retreg1 protein_coding Interval_44158 chr13 41302617 41303605 + 0 NA Intergenic Intergenic -29134 ENSMUSG00000090853.1 ENSMUSG00000090853 ENSMUST00000163881 Gm17364 protein_coding Interval_96956 chr2 129881898 129882494 + 0 NA Intergenic Intergenic -66372 ENSMUSG00000100255.1 ENSMUSG00000100255 ENSMUST00000187719 Gm28196 lincRNA Interval_22870 chr11 16948740 16950119 + 0 NA intron (ENSMUSG00000087060.7, intron 1 of 1) processed_transcript-intron (ENSMUSG00000087060.7, intron 2 of 3) 1664 ENSMUSG00000087060.7 ENSMUSG00000087060 ENSMUST00000142777 Eldr processed_transcript Interval_76245 chr17 78407008 78408571 + 0 NA intron (ENSMUSG00000056121.16, intron 2 of 9) protein_coding-intron (ENSMUSG00000056121.16, intron 2 of 7) -1027 ENSMUSG00000117525.1 ENSMUSG00000117525 ENSMUST00000234569 Gm50034 antisense Interval_165827 chr9 53609760 53610870 + 0 NA promoter-TSS (ENSMUSG00000032047.5) protein_coding-promoter-TSS (ENSMUSG00000032047.5) -26558 ENSMUSG00000032047.5 ENSMUSG00000032047 ENSMUST00000167130 Acat1 protein_coding Interval_17674 chr10 78974646 78974908 + 0 NA intron (ENSMUSG00000112732.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000112732.1, intron 1 of 1) -6338 ENSMUSG00000046493.5 ENSMUSG00000046493 ENSMUST00000203973 Olfr1352 protein_coding Interval_5508 chr1 89430209 89430627 + 0 NA Intergenic Intergenic -24285 ENSMUSG00000099938.1 ENSMUSG00000099938 ENSMUST00000186258 C030007H22Rik lincRNA Interval_26644 chr11 59425720 59426275 + 0 NA intron (ENSMUSG00000009894.15, intron 3 of 4) protein_coding-intron (ENSMUSG00000009894.15, intron 3 of 4) 24002 ENSMUSG00000009894.15 ENSMUSG00000009894 ENSMUST00000125846 Snap47 protein_coding Interval_34293 chr12 3169960 3170190 + 0 NA Intergenic Intergenic -1799 ENSMUSG00000110250.1 ENSMUSG00000110250 ENSMUST00000210657 Gm9077 unprocessed_pseudogene Interval_33598 chr11 117417121 117417533 + 0 NA Intergenic Intergenic 2938 ENSMUSG00000086588.1 ENSMUSG00000086588 ENSMUST00000124901 Gm11729 lincRNA Interval_131558 chr5 138122634 138123237 + 0 NA intron (ENSMUSG00000037017.15, intron 3 of 3) protein_coding-intron (ENSMUSG00000037017.15, intron 2 of 4) 5955 ENSMUSG00000037017.15 ENSMUSG00000037017 ENSMUST00000110959 Zscan21 protein_coding Interval_171661 chr9 120005644 120006544 + 0 NA TTS (ENSMUSG00000111369.1) lincRNA-TTS (ENSMUSG00000111369.1) 2057 ENSMUSG00000111369.1 ENSMUSG00000111369 ENSMUST00000216943 Gm47043 lincRNA Interval_114903 chr4 86825529 86825893 + 0 NA exon (ENSMUSG00000038024.17, exon 23 of 26) protein_coding-exon (ENSMUSG00000038024.17, exon 23 of 26) -7134 ENSMUSG00000082969.1 ENSMUSG00000082969 ENSMUST00000121575 Gm12630 processed_pseudogene Interval_156509 chr8 48825770 48826124 + 0 NA intron (ENSMUSG00000031561.16, intron 1 of 2) protein_coding-intron (ENSMUSG00000031561.16, intron 1 of 2) -17775 ENSMUSG00000100706.6 ENSMUSG00000100706 ENSMUST00000188936 Gm19744 processed_transcript Interval_146892 chr7 55463600 55463930 + 0 NA Intergenic Intergenic 1696 ENSMUSG00000108744.1 ENSMUSG00000108744 ENSMUST00000205703 Gm9367 processed_pseudogene Interval_115831 chr4 105122409 105123189 + 0 NA Intergenic Intergenic -12909 ENSMUSG00000028518.8 ENSMUSG00000028518 ENSMUST00000030243 Prkaa2 protein_coding Interval_33078 chr11 114229056 114229765 + 0 NA intron (ENSMUSG00000085844.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000085844.1, intron 1 of 1) 9092 ENSMUSG00000085844.1 ENSMUSG00000085844 ENSMUST00000128183 Gm11690 lincRNA Interval_114614 chr4 83225889 83226108 + 0 NA TTS (ENSMUSG00000038172.14) protein_coding-TTS (ENSMUSG00000038172.14) 32010 ENSMUSG00000083245.1 ENSMUSG00000083245 ENSMUST00000117732 Gm11185 processed_pseudogene Interval_144228 chr7 23362272 23362478 + 0 NA TTS (ENSMUSG00000045693.8) protein_coding-TTS (ENSMUSG00000045693.8) 5250 ENSMUSG00000109325.1 ENSMUSG00000109325 ENSMUST00000208495 Krt8-ps processed_pseudogene Interval_137078 chr6 67197829 67198472 + 0 NA intron (ENSMUSG00000107799.1, intron 1 of 2) antisense-intron (ENSMUSG00000107799.1, intron 1 of 2) -7469 ENSMUSG00000047905.10 ENSMUSG00000047905 ENSMUST00000120174 Gm8566 processed_pseudogene Interval_137432 chr6 72244552 72245751 + 0 NA Intergenic Intergenic -9921 ENSMUSG00000037621.8 ENSMUSG00000037621 ENSMUST00000206553 Atoh8 protein_coding Interval_77819 chr18 4021374 4022773 + 0 NA Intergenic Intergenic 11817 ENSMUSG00000117395.1 ENSMUSG00000117395 ENSMUST00000234528 Gm7378 processed_pseudogene Interval_63593 chr15 102239319 102241164 + 0 NA exon (ENSMUSG00000001288.15, exon 6 of 10) protein_coding-exon (ENSMUSG00000001288.15, exon 6 of 10) -8333 ENSMUSG00000001281.10 ENSMUSG00000001281 ENSMUST00000127014 Itgb7 protein_coding Interval_70228 chr17 6852081 6852844 + 0 NA Intergenic Intergenic 42875 ENSMUSG00000076218.1 ENSMUSG00000076218 ENSMUST00000102263 Mir692-1 miRNA Interval_105404 chr3 86010368 86012193 + 0 NA intron (ENSMUSG00000028082.14, intron 1 of 20) protein_coding-intron (ENSMUSG00000028082.14, intron 1 of 20) -8789 ENSMUSG00000049013.3 ENSMUSG00000049013 ENSMUST00000061343 Prss48 protein_coding Interval_85376 chr19 25327361 25328190 + 0 NA intron (ENSMUSG00000032702.16, intron 3 of 13) protein_coding-intron (ENSMUSG00000032702.16, intron 3 of 13) 19428 ENSMUSG00000118238.1 ENSMUSG00000118238 ENSMUST00000235913 Gm34432 processed_pseudogene Interval_32981 chr11 113500207 113500455 + 0 NA intron (ENSMUSG00000041654.15, intron 4 of 4) protein_coding-intron (ENSMUSG00000041654.15, intron 5 of 10) 32354 ENSMUSG00000078251.2 ENSMUSG00000078251 ENSMUST00000105048 Gm16487 pseudogene Interval_174579 chrX 159390256 159390915 + 0 NA TTS (ENSMUSG00000067194.6) protein_coding-TTS (ENSMUSG00000067194.6) 18407 ENSMUSG00000067194.6 ENSMUSG00000067194 ENSMUST00000087143 Eif1ax protein_coding Interval_31220 chr11 98974970 98975606 + 0 NA TTS (ENSMUSG00000037992.16) protein_coding-TTS (ENSMUSG00000037992.16) 7728 ENSMUSG00000047197.1 ENSMUSG00000047197 ENSMUST00000062931 Gjd3 protein_coding Interval_41749 chr12 118659029 118660023 + 0 NA Intergenic Intergenic 56849 ENSMUSG00000114034.1 ENSMUSG00000114034 ENSMUST00000222831 Gm9267 processed_pseudogene Interval_126272 chr5 85835409 85835831 + 0 NA Intergenic Intergenic 5993 ENSMUSG00000064555.1 ENSMUSG00000064555 ENSMUST00000082621 Gm24626 snRNA Interval_12013 chr1 188843909 188845367 + 0 NA intron (ENSMUSG00000026609.15, intron 55 of 70) protein_coding-intron (ENSMUSG00000026609.15, intron 55 of 70) 84162 ENSMUSG00000084550.1 ENSMUSG00000084550 ENSMUST00000122601 Gm25269 snRNA Interval_72888 chr17 32951355 32952030 + 0 NA TTS (ENSMUSG00000024295.9) transcribed_unprocessed_pseudogene-TTS (ENSMUSG00000024295.9) 865 ENSMUSG00000024295.9 ENSMUSG00000024295 ENSMUST00000234365 Cyp4f41-ps transcribed_unprocessed_pseudogene Interval_9787 chr1 162336610 162337348 + 0 NA intron (ENSMUSG00000040265.16, intron 4 of 5) protein_coding-intron (ENSMUSG00000040265.16, intron 4 of 19) 20887 ENSMUSG00000089933.1 ENSMUSG00000089933 ENSMUST00000160695 Gm16101 processed_pseudogene Interval_134869 chr6 32916890 32917140 + 0 NA intron (ENSMUSG00000053768.13, intron 4 of 7) protein_coding-intron (ENSMUSG00000053768.13, intron 4 of 7) -19944 ENSMUSG00000053768.13 ENSMUSG00000053768 ENSMUST00000115091 Chchd3 protein_coding Interval_148824 chr7 88958864 88959048 + 0 NA Intergenic Intergenic -94064 ENSMUSG00000109278.1 ENSMUSG00000109278 ENSMUST00000207473 Gm45144 lincRNA Interval_39178 chr12 85631316 85631901 + 0 NA intron (ENSMUSG00000034271.16, intron 2 of 3) protein_coding-intron (ENSMUSG00000034271.16, intron 2 of 3) 29386 ENSMUSG00000034271.16 ENSMUSG00000034271 ENSMUST00000222689 Jdp2 protein_coding Interval_55139 chr14 78553787 78554069 + 0 NA Intergenic Intergenic 46548 ENSMUSG00000115087.1 ENSMUSG00000115087 ENSMUST00000228170 Gm48998 TEC Interval_81351 chr18 58803896 58804771 + 0 NA Intergenic Intergenic 25908 ENSMUSG00000118337.1 ENSMUSG00000118337 ENSMUST00000235435 Gm50227 lincRNA Interval_131768 chr5 139757955 139758840 + 0 NA intron (ENSMUSG00000029547.10, intron 31 of 46) protein_coding-intron (ENSMUSG00000029547.10, intron 31 of 46) 9546 ENSMUSG00000098574.1 ENSMUSG00000098574 ENSMUST00000184414 Mir7037 miRNA Interval_172797 chrX 49480129 49481182 + 0 NA intron (ENSMUSG00000036198.12, intron 1 of 12) protein_coding-intron (ENSMUSG00000036198.12, intron 1 of 11) -5020 ENSMUSG00000036198.12 ENSMUSG00000036198 ENSMUST00000132784 Arhgap36 protein_coding Interval_10740 chr1 173866542 173866936 + 0 NA intron (ENSMUSG00000090272.9, intron 6 of 9) protein_coding-intron (ENSMUSG00000090272.9, intron 4 of 6) -4240 ENSMUSG00000090272.9 ENSMUSG00000090272 ENSMUST00000187636 Mndal protein_coding Interval_114911 chr4 86887860 86888401 + 0 NA intron (ENSMUSG00000038007.14, intron 3 of 4) protein_coding-intron (ENSMUSG00000038007.14, intron 3 of 5) -30785 ENSMUSG00000028495.14 ENSMUSG00000028495 ENSMUST00000130001 Rps6 protein_coding Interval_156338 chr8 47533018 47534099 + 0 NA promoter-TSS (ENSMUSG00000031568.16) protein_coding-promoter-TSS (ENSMUSG00000031568.16) -5528 ENSMUSG00000038102.15 ENSMUSG00000038102 ENSMUST00000131551 Trappc11 protein_coding Interval_122544 chr5 23702077 23702527 + 0 NA exon (ENSMUSG00000105987.4, exon 4 of 4) processed_transcript-exon (ENSMUSG00000105987.4, exon 4 of 4) 8759 ENSMUSG00000096832.1 ENSMUSG00000096832 ENSMUST00000116685 Gm50451 snoRNA Interval_53600 chr14 59774805 59775211 + 0 NA intron (ENSMUSG00000021983.16, intron 29 of 35) protein_coding-intron (ENSMUSG00000021983.16, intron 29 of 35) 132460 ENSMUSG00000114593.1 ENSMUSG00000114593 ENSMUST00000224256 Gm19716 transcribed_processed_pseudogene Interval_80966 chr18 51437929 51438150 + 0 NA Intergenic Intergenic 169629 ENSMUSG00000077317.1 ENSMUSG00000077317 ENSMUST00000104129 Gm25785 snRNA Interval_4549 chr1 74957382 74958077 + 0 NA Intergenic Intergenic 3477 ENSMUSG00000103145.1 ENSMUSG00000103145 ENSMUST00000194616 Gm37744 TEC Interval_56649 chr14 121140078 121140292 + 0 NA intron (ENSMUSG00000025555.14, intron 1 of 7) protein_coding-intron (ENSMUSG00000025555.14, intron 2 of 26) 38106 ENSMUSG00000025555.14 ENSMUSG00000025555 ENSMUST00000137971 Farp1 protein_coding Interval_140954 chr6 123014130 123014517 + 0 NA intron (ENSMUSG00000059639.2, intron 5 of 5) protein_coding-intron (ENSMUSG00000059639.2, intron 5 of 5) 23956 ENSMUSG00000059639.2 ENSMUSG00000059639 ENSMUST00000079379 Clec4a4 protein_coding Interval_60631 chr15 75828442 75829242 + 0 NA promoter-TSS (ENSMUSG00000075600.3) protein_coding-promoter-TSS (ENSMUSG00000075600.3) -633 ENSMUSG00000075600.3 ENSMUSG00000075600 ENSMUST00000229000 Zc3h3 protein_coding Interval_129834 chr5 122649543 122649823 + 0 NA promoter-TSS (ENSMUSG00000029468.17) protein_coding-promoter-TSS (ENSMUSG00000029468.17) -741 ENSMUSG00000029468.17 ENSMUSG00000029468 ENSMUST00000197042 P2rx7 protein_coding Interval_46795 chr13 70610567 70611648 + 0 NA intron (ENSMUSG00000034525.7, intron 8 of 11) protein_coding-intron (ENSMUSG00000034525.7, intron 10 of 18) -14854 ENSMUSG00000034525.7 ENSMUSG00000034525 ENSMUST00000222568 Ice1 protein_coding Interval_124847 chr5 56471344 56472149 + 0 NA intron (ENSMUSG00000106326.1, intron 1 of 1) transcribed_processed_pseudogene-intron (ENSMUSG00000106326.1, intron 1 of 1) 57536 ENSMUSG00000106326.1 ENSMUSG00000106326 ENSMUST00000197497 Gm42977 transcribed_processed_pseudogene Interval_146264 chr7 45045847 45046813 + 0 NA exon (ENSMUSG00000046574.8, exon 5 of 14) protein_coding-exon (ENSMUSG00000046574.8, exon 5 of 14) -11936 ENSMUSG00000046574.8 ENSMUSG00000046574 ENSMUST00000210410 Prr12 protein_coding Interval_30688 chr11 95911282 95911833 + 0 NA intron (ENSMUSG00000013418.8, intron 1 of 10) protein_coding-intron (ENSMUSG00000013418.8, intron 1 of 10) 3334 ENSMUSG00000013418.8 ENSMUSG00000013418 ENSMUST00000038343 B4galnt2 protein_coding Interval_54986 chr14 76677965 76679234 + 0 NA exon (ENSMUSG00000101009.6, exon 1 of 1) processed_transcript-exon (ENSMUSG00000101009.6, exon 1 of 1) 945 ENSMUSG00000101009.6 ENSMUSG00000101009 ENSMUST00000191384 1700108F19Rik processed_transcript Interval_34793 chr12 11225852 11226497 + 0 NA Intergenic Intergenic -3964 ENSMUSG00000103287.1 ENSMUSG00000103287 ENSMUST00000192736 1700034J04Rik TEC Interval_33187 chr11 115083280 115083939 + 0 NA Intergenic Intergenic -21432 ENSMUSG00000048498.7 ENSMUSG00000048498 ENSMUST00000062787 Cd300e protein_coding Interval_158676 chr8 85091121 85092059 + 0 NA exon (ENSMUSG00000005142.10, exon 11 of 24) protein_coding-exon (ENSMUSG00000005142.10, exon 11 of 24) 7302 ENSMUSG00000005142.10 ENSMUSG00000005142 ENSMUST00000211223 Man2b1 protein_coding Interval_76597 chr17 82250391 82250773 + 0 NA Intergenic Intergenic 14705 ENSMUSG00000094390.1 ENSMUSG00000094390 ENSMUST00000174994 Gm23400 miRNA Interval_54240 chr14 66805328 66806104 + 0 NA intron (ENSMUSG00000022048.8, intron 13 of 13) protein_coding-intron (ENSMUSG00000022048.8, intron 13 of 13) -7338 ENSMUSG00000114829.1 ENSMUSG00000114829 ENSMUST00000223821 Gm9130 processed_pseudogene Interval_50383 chr14 12319660 12320167 + 0 NA intron (ENSMUSG00000114378.1, intron 6 of 6) protein_coding-intron (ENSMUSG00000114378.1, intron 6 of 6) -1466 ENSMUSG00000114853.1 ENSMUSG00000114853 ENSMUST00000225919 D030051J21Rik lincRNA Interval_9648 chr1 160728987 160729190 + 0 NA promoter-TSS (ENSMUSG00000103632.1) TEC-promoter-TSS (ENSMUSG00000103632.1) -928 ENSMUSG00000103632.1 ENSMUSG00000103632 ENSMUST00000193473 Gm38329 TEC Interval_89003 chr2 14264793 14265269 + 0 NA intron (ENSMUSG00000026712.3, intron 6 of 29) protein_coding-intron (ENSMUSG00000026712.3, intron 6 of 29) 4028 ENSMUSG00000077897.1 ENSMUSG00000077897 ENSMUST00000104704 Mir511 miRNA Interval_46 GL456212.1 69079 70612 + 0 NA NA NA NA NA Interval_8950 chr1 152654761 152655056 + 0 NA intron (ENSMUSG00000026482.13, intron 2 of 18) protein_coding-intron (ENSMUSG00000026482.13, intron 2 of 17) 32593 ENSMUSG00000086145.1 ENSMUSG00000086145 ENSMUST00000139309 Gm15479 sense_intronic Interval_154814 chr8 23628819 23629924 + 0 NA Intergenic Intergenic -40290 ENSMUSG00000037492.16 ENSMUSG00000037492 ENSMUST00000146774 Zmat4 protein_coding Interval_141982 chr6 136331637 136332327 + 0 NA Intergenic Intergenic 3452 ENSMUSG00000094973.2 ENSMUSG00000094973 ENSMUST00000077886 Eif4a3l1 protein_coding Interval_80445 chr18 42287267 42287653 + 0 NA intron (ENSMUSG00000024491.16, intron 1 of 20) protein_coding-intron (ENSMUSG00000024491.16, intron 1 of 19) -11661 ENSMUSG00000024491.16 ENSMUSG00000024491 ENSMUST00000237798 Rbm27 protein_coding Interval_17940 chr10 80923176 80923430 + 0 NA Intergenic Intergenic -5058 ENSMUSG00000062075.13 ENSMUSG00000062075 ENSMUST00000159094 Lmnb2 protein_coding Interval_26247 chr11 55419580 55420463 + 0 NA promoter-TSS (ENSMUSG00000018593.13) protein_coding-promoter-TSS (ENSMUSG00000018593.13) 304 ENSMUSG00000018593.13 ENSMUSG00000018593 ENSMUST00000125787 Sparc protein_coding Interval_70327 chr17 8513237 8514267 + 0 NA Intergenic Intergenic 53198 ENSMUSG00000099104.1 ENSMUSG00000099104 ENSMUST00000184183 Gm17087 protein_coding Interval_167842 chr9 73025896 73026821 + 0 NA TTS (ENSMUSG00000102305.1) TEC-TTS (ENSMUSG00000102305.1) 2065 ENSMUSG00000102305.1 ENSMUSG00000102305 ENSMUST00000194364 Gm38192 TEC Interval_68455 chr16 77041377 77042456 + 0 NA intron (ENSMUSG00000022867.11, intron 3 of 25) protein_coding-intron (ENSMUSG00000022867.11, intron 3 of 23) 28210 ENSMUSG00000022867.11 ENSMUSG00000022867 ENSMUST00000232351 Usp25 protein_coding Interval_35333 chr12 20735795 20736187 + 0 NA Intergenic Intergenic 68717 ENSMUSG00000101813.1 ENSMUSG00000101813 ENSMUST00000185966 Gm28503 transcribed_processed_pseudogene Interval_62933 chr15 98003199 98005103 + 0 NA exon (ENSMUSG00000022483.17, exon 1 of 1) protein_coding-exon (ENSMUSG00000022483.17, exon 1 of 1) 340 ENSMUSG00000022483.17 ENSMUSG00000022483 ENSMUST00000230148 Col2a1 protein_coding Interval_106928 chr3 102011442 102013367 + 0 NA exon (ENSMUSG00000048540.8, exon 2 of 2) protein_coding-exon (ENSMUSG00000048540.8, exon 2 of 2) 2249 ENSMUSG00000048540.8 ENSMUSG00000048540 ENSMUST00000198675 Nhlh2 protein_coding Interval_8350 chr1 137656951 137657538 + 0 NA Intergenic Intergenic -77074 ENSMUSG00000088715.1 ENSMUSG00000088715 ENSMUST00000158090 Gm22727 snoRNA Interval_150564 chr7 112469426 112470412 + 0 NA intron (ENSMUSG00000030770.15, intron 2 of 13) protein_coding-intron (ENSMUSG00000030770.15, intron 1 of 12) 42014 ENSMUSG00000030770.15 ENSMUSG00000030770 ENSMUST00000126047 Parva protein_coding Interval_78681 chr18 17086185 17086716 + 0 NA intron (ENSMUSG00000087170.7, intron 4 of 7) lincRNA-intron (ENSMUSG00000087170.7, intron 4 of 7) 40352 ENSMUSG00000088350.1 ENSMUSG00000088350 ENSMUST00000157725 Gm24015 misc_RNA Interval_68942 chr16 89537937 89538129 + 0 NA Intergenic Intergenic -29710 ENSMUSG00000056706.3 ENSMUSG00000056706 ENSMUST00000056118 Krtap7-1 protein_coding Interval_45258 chr13 53579583 53579982 + 0 NA Intergenic Intergenic -46525 ENSMUSG00000113834.1 ENSMUSG00000113834 ENSMUST00000223156 Gm34022 lincRNA Interval_151194 chr7 119356025 119356771 + 0 NA Intergenic Intergenic -50150 ENSMUSG00000077653.1 ENSMUSG00000077653 ENSMUST00000104465 Gm23321 snoRNA Interval_146981 chr7 56940517 56941014 + 0 NA intron (ENSMUSG00000055026.13, intron 5 of 9) protein_coding-intron (ENSMUSG00000055026.13, intron 5 of 9) 61754 ENSMUSG00000108556.1 ENSMUSG00000108556 ENSMUST00000206902 Gm17987 processed_pseudogene Interval_116190 chr4 108554505 108555007 + 0 NA promoter-TSS (ENSMUSG00000034610.14) protein_coding-promoter-TSS (ENSMUSG00000034610.14) 12271 ENSMUSG00000063800.5 ENSMUSG00000063800 ENSMUST00000125106 Prpf38a protein_coding Interval_4278 chr1 72350977 72351164 + 0 NA intron (ENSMUSG00000026187.9, intron 14 of 20) protein_coding-intron (ENSMUSG00000026187.9, intron 14 of 20) 43643 ENSMUSG00000026187.9 ENSMUSG00000026187 ENSMUST00000027379 Xrcc5 protein_coding Interval_42137 chr13 9107203 9108147 + 0 NA intron (ENSMUSG00000033499.14, intron 1 of 15) protein_coding-intron (ENSMUSG00000033499.14, intron 1 of 16) -1630 ENSMUSG00000088442.1 ENSMUSG00000088442 ENSMUST00000157817 Gm23553 misc_RNA Interval_75736 chr17 70942869 70943906 + 0 NA Intergenic Intergenic -13737 ENSMUSG00000117200.1 ENSMUSG00000117200 ENSMUST00000233596 Gm49905 processed_pseudogene Interval_25167 chr11 44690112 44690406 + 0 NA intron (ENSMUSG00000057098.14, intron 6 of 15) protein_coding-intron (ENSMUSG00000057098.14, intron 6 of 15) -27583 ENSMUSG00000085784.1 ENSMUSG00000085784 ENSMUST00000130493 Gm12158 antisense Interval_6171 chr1 99172438 99172677 + 0 NA Intergenic Intergenic 155193 ENSMUSG00000087804.1 ENSMUSG00000087804 ENSMUST00000157179 Gm23434 snRNA Interval_109748 chr3 146520430 146522052 + 0 NA promoter-TSS (ENSMUSG00000028187.10) protein_coding-promoter-TSS (ENSMUSG00000028187.10) -12749 ENSMUSG00000028187.10 ENSMUSG00000028187 ENSMUST00000199079 Rpf1 protein_coding Interval_62222 chr15 88919207 88919719 + 0 NA intron (ENSMUSG00000022388.14, intron 9 of 11) protein_coding-intron (ENSMUSG00000022388.14, intron 9 of 11) -27938 ENSMUSG00000093394.1 ENSMUSG00000093394 ENSMUST00000176338 Gm20621 sense_overlapping Interval_71282 chr17 21876506 21876854 + 0 NA Intergenic Intergenic -30908 ENSMUSG00000069743.5 ENSMUSG00000069743 ENSMUST00000232918 Zfp820 protein_coding Interval_128216 chr5 111805845 111806475 + 0 NA TTS (ENSMUSG00000105376.4) lincRNA-TTS (ENSMUSG00000105376.4) 12773 ENSMUSG00000105376.4 ENSMUSG00000105376 ENSMUST00000200641 Gm36535 lincRNA Interval_82889 chr18 78362939 78364080 + 0 NA intron (ENSMUSG00000024552.16, intron 2 of 21) protein_coding-intron (ENSMUSG00000024552.16, intron 2 of 11) 13755 ENSMUSG00000090451.1 ENSMUSG00000090451 ENSMUST00000164064 Gm6133 protein_coding Interval_15963 chr10 59707992 59708603 + 0 NA promoter-TSS (ENSMUSG00000090350.1) processed_pseudogene-promoter-TSS (ENSMUSG00000090350.1) -493 ENSMUSG00000090350.1 ENSMUSG00000090350 ENSMUST00000164702 Gm17148 processed_pseudogene Interval_99139 chr2 157432166 157432565 + 0 NA intron (ENSMUSG00000027646.15, intron 2 of 3) protein_coding-intron (ENSMUSG00000027646.15, intron 1 of 13) 8249 ENSMUSG00000027646.15 ENSMUSG00000027646 ENSMUST00000109529 Src protein_coding Interval_173985 chrX 122396748 122397772 + 0 NA exon (ENSMUSG00000055733.6, exon 1 of 1) protein_coding-exon (ENSMUSG00000055733.6, exon 1 of 1) 141 ENSMUSG00000055733.6 ENSMUSG00000055733 ENSMUST00000079490 Nap1l3 protein_coding Interval_139398 chr6 99825761 99826404 + 0 NA Intergenic Intergenic 14232 ENSMUSG00000107713.1 ENSMUSG00000107713 ENSMUST00000205215 Gm6681 processed_pseudogene Interval_126912 chr5 97055644 97055910 + 0 NA intron (ENSMUSG00000034663.13, intron 9 of 13) protein_coding-intron (ENSMUSG00000034663.13, intron 9 of 15) 9596 ENSMUSG00000104591.1 ENSMUSG00000104591 ENSMUST00000198963 Gm43145 TEC Interval_92389 chr2 59435033 59435575 + 0 NA Intergenic Intergenic -35523 ENSMUSG00000080982.1 ENSMUSG00000080982 ENSMUST00000118339 Gm13549 processed_pseudogene Interval_40095 chr12 101124751 101125132 + 0 NA Intergenic Intergenic -7830 ENSMUSG00000113817.1 ENSMUSG00000113817 ENSMUST00000223122 Gm21056 transcribed_unprocessed_pseudogene Interval_98811 chr2 155191899 155193044 + 0 NA intron (ENSMUSG00000027598.16, intron 13 of 15) protein_coding-intron (ENSMUSG00000027598.16, intron 13 of 24) 6789 ENSMUSG00000082596.1 ENSMUSG00000082596 ENSMUST00000119431 Gm14227 processed_pseudogene Interval_18409 chr10 85591298 85592532 + 0 NA intron (ENSMUSG00000020042.15, intron 3 of 16) protein_coding-intron (ENSMUSG00000020042.15, intron 3 of 9) -53288 ENSMUSG00000020042.15 ENSMUSG00000020042 ENSMUST00000145433 Btbd11 protein_coding Interval_91021 chr2 34420159 34420568 + 0 NA intron (ENSMUSG00000038696.14, intron 1 of 2) protein_coding-intron (ENSMUSG00000038696.14, intron 1 of 10) -7016 ENSMUSG00000083503.1 ENSMUSG00000083503 ENSMUST00000118256 Gm13407 processed_pseudogene Interval_156643 chr8 56266318 56267407 + 0 NA Intergenic Intergenic -27723 ENSMUSG00000031613.9 ENSMUSG00000031613 ENSMUST00000034026 Hpgd protein_coding Interval_91957 chr2 52029435 52029658 + 0 NA Intergenic Intergenic -8463 ENSMUSG00000053475.5 ENSMUSG00000053475 ENSMUST00000065927 Tnfaip6 protein_coding Interval_9195 chr1 155006470 155007347 + 0 NA Intergenic Intergenic -24831 ENSMUSG00000101433.1 ENSMUSG00000101433 ENSMUST00000191584 Gm29441 processed_pseudogene Interval_124094 chr5 38226440 38226778 + 0 NA TTS (ENSMUSG00000067367.9) protein_coding-TTS (ENSMUSG00000067367.9) 6081 ENSMUSG00000067367.9 ENSMUSG00000067367 ENSMUST00000131492 Lyar protein_coding Interval_171513 chr9 118977825 118978306 + 0 NA intron (ENSMUSG00000047409.13, intron 1 of 5) protein_coding-intron (ENSMUSG00000047409.13, intron 1 of 7) 48198 ENSMUSG00000047409.13 ENSMUSG00000047409 ENSMUST00000174132 Ctdspl protein_coding Interval_66233 chr16 32473350 32473735 + 0 NA TTS (ENSMUSG00000035699.8) protein_coding-TTS (ENSMUSG00000035699.8) 10602 ENSMUSG00000005615.15 ENSMUSG00000005615 ENSMUST00000231920 Pcyt1a protein_coding Interval_37518 chr12 69526821 69527017 + 0 NA Intergenic Intergenic 34418 ENSMUSG00000095776.1 ENSMUSG00000095776 ENSMUST00000177928 Gm23018 miRNA Interval_77700 chr17 94469782 94470054 + 0 NA Intergenic Intergenic -138267 ENSMUSG00000117476.1 ENSMUSG00000117476 ENSMUST00000234959 Gm9416 processed_pseudogene Interval_62401 chr15 91897547 91898034 + 0 NA exon (ENSMUSG00000044021.14, exon 25 of 43) protein_coding-exon (ENSMUSG00000044021.14, exon 25 of 43) 20011 ENSMUSG00000044021.14 ENSMUSG00000044021 ENSMUST00000088547 Muc19 protein_coding Interval_83617 chr18 90597540 90598357 + 0 NA Intergenic Intergenic 12476 ENSMUSG00000109923.1 ENSMUSG00000109923 ENSMUST00000210329 Gm20039 processed_pseudogene Interval_65044 chr16 18677890 18679299 + 0 NA Intergenic Intergenic 3622 ENSMUSG00000116825.1 ENSMUSG00000116825 ENSMUST00000231787 Rps2-ps7 processed_pseudogene Interval_1559 chr1 26107095 26107288 + 0 NA Intergenic Intergenic -110032 ENSMUSG00000101618.1 ENSMUSG00000101618 ENSMUST00000185358 Gm18443 processed_pseudogene Interval_124660 chr5 52919016 52919450 + 0 NA promoter-TSS (ENSMUSG00000105054.1) processed_pseudogene-promoter-TSS (ENSMUSG00000105054.1) -24 ENSMUSG00000105054.1 ENSMUSG00000105054 ENSMUST00000196038 Gm43664 processed_pseudogene Interval_45358 chr13 54653800 54654234 + 0 NA intron (ENSMUSG00000025873.16, intron 5 of 5) protein_coding-intron (ENSMUSG00000025873.16, intron 8 of 10) 32216 ENSMUSG00000025873.16 ENSMUSG00000025873 ENSMUST00000141915 Faf2 protein_coding Interval_39638 chr12 91732650 91732888 + 0 NA intron (ENSMUSG00000020961.15, intron 3 of 3) protein_coding-intron (ENSMUSG00000020961.15, intron 3 of 6) 38401 ENSMUSG00000020961.15 ENSMUSG00000020961 ENSMUST00000166008 Ston2 protein_coding Interval_81426 chr18 60684571 60685149 + 0 NA exon (ENSMUSG00000054008.9, exon 3 of 3) protein_coding-exon (ENSMUSG00000054008.9, exon 3 of 3) 48290 ENSMUSG00000054008.9 ENSMUSG00000054008 ENSMUST00000237070 Ndst1 protein_coding Interval_87138 chr19 46394884 46397416 + 0 NA promoter-TSS (ENSMUSG00000025231.17) protein_coding-promoter-TSS (ENSMUSG00000025231.17) -425 ENSMUSG00000025228.5 ENSMUSG00000025228 ENSMUST00000237952 Actr1a protein_coding Interval_23806 chr11 26427121 26427409 + 0 NA intron (ENSMUSG00000004018.9, intron 2 of 3) protein_coding-intron (ENSMUSG00000004018.9, intron 6 of 13) 18058 ENSMUSG00000081811.1 ENSMUSG00000081811 ENSMUST00000118404 Gm12713 processed_pseudogene Interval_158597 chr8 84686120 84688149 + 0 NA promoter-TSS (ENSMUSG00000001910.5) protein_coding-promoter-TSS (ENSMUSG00000001910.5) 457 ENSMUSG00000001910.5 ENSMUSG00000001910 ENSMUST00000238687 Nacc1 protein_coding Interval_32938 chr11 113245660 113246141 + 0 NA exon (ENSMUSG00000041654.15, exon 11 of 11) protein_coding-exon (ENSMUSG00000041654.15, exon 11 of 11) -36231 ENSMUSG00000085421.1 ENSMUSG00000085421 ENSMUST00000130373 4732490B19Rik lincRNA Interval_142890 chr6 146737152 146737538 + 0 NA intron (ENSMUSG00000001630.13, intron 1 of 1) protein_coding-intron (ENSMUSG00000001630.13, intron 1 of 13) 12033 ENSMUSG00000001630.13 ENSMUSG00000001630 ENSMUST00000203318 Stk38l protein_coding Interval_37176 chr12 59191187 59191585 + 0 NA exon (ENSMUSG00000021000.17, exon 24 of 24) protein_coding-exon (ENSMUSG00000021000.17, exon 24 of 24) 13050 ENSMUSG00000035329.7 ENSMUSG00000035329 ENSMUST00000161351 Fbxo33 protein_coding Interval_97156 chr2 131828268 131828830 + 0 NA TTS (ENSMUSG00000086822.2) lincRNA-TTS (ENSMUSG00000086822.2) 17046 ENSMUSG00000081422.1 ENSMUSG00000081422 ENSMUST00000119484 Gm14282 transcribed_processed_pseudogene Interval_117011 chr4 119001083 119002358 + 0 NA Intergenic Intergenic -1235 ENSMUSG00000087464.1 ENSMUSG00000087464 ENSMUST00000150754 Gm12862 lincRNA Interval_19638 chr10 106609158 106609964 + 0 NA intron (ENSMUSG00000053825.15, intron 3 of 31) protein_coding-intron (ENSMUSG00000053825.15, intron 3 of 31) -8501 ENSMUSG00000112201.1 ENSMUSG00000112201 ENSMUST00000219229 4930532I03Rik antisense Interval_161959 chr8 124051892 124052790 + 0 NA intron (ENSMUSG00000092329.1, intron 1 of 15) protein_coding-intron (ENSMUSG00000092329.1, intron 1 of 15) -3929 ENSMUSG00000110704.1 ENSMUSG00000110704 ENSMUST00000212460 Gm45732 antisense Interval_170070 chr9 104220053 104221624 + 0 NA intron (ENSMUSG00000032560.14, intron 12 of 55) protein_coding-intron (ENSMUSG00000032560.14, intron 13 of 55) -33903 ENSMUSG00000032560.14 ENSMUSG00000032560 ENSMUST00000189299 Dnajc13 protein_coding Interval_17391 chr10 76301464 76301992 + 0 NA intron (ENSMUSG00000020231.15, intron 9 of 14) protein_coding-intron (ENSMUSG00000020231.15, intron 9 of 37) 8563 ENSMUSG00000089711.1 ENSMUSG00000089711 ENSMUST00000161924 Gm16240 antisense Interval_12241 chr1 191068409 191068901 + 0 NA intron (ENSMUSG00000062510.12, intron 2 of 4) protein_coding-intron (ENSMUSG00000062510.12, intron 2 of 4) 5631 ENSMUSG00000062510.12 ENSMUSG00000062510 ENSMUST00000078259 Nsl1 protein_coding Interval_49214 chr13 109518434 109519724 + 0 NA intron (ENSMUSG00000021699.17, intron 1 of 14) protein_coding-intron (ENSMUSG00000021699.17, intron 1 of 14) 194335 ENSMUSG00000076946.2 ENSMUSG00000076946 ENSMUST00000103758 Mir582 miRNA Interval_107236 chr3 104811591 104812493 + 0 NA intron (ENSMUSG00000002227.15, intron 1 of 1) protein_coding-intron (ENSMUSG00000002227.15, intron 1 of 19) 6074 ENSMUSG00000002227.15 ENSMUSG00000002227 ENSMUST00000145414 Mov10 protein_coding Interval_80798 chr18 47270159 47270736 + 0 NA intron (ENSMUSG00000019647.16, intron 17 of 17) protein_coding-intron (ENSMUSG00000019647.16, intron 18 of 18) 62901 ENSMUSG00000019647.16 ENSMUSG00000019647 ENSMUST00000144223 Sema6a protein_coding Interval_140379 chr6 117675206 117677355 + 0 NA intron (ENSMUSG00000099869.6, intron 2 of 3) lincRNA-intron (ENSMUSG00000099869.6, intron 3 of 4) -40193 ENSMUSG00000104222.1 ENSMUSG00000104222 ENSMUST00000195277 Gm7292 lincRNA Interval_104206 chr3 60566086 60566515 + 0 NA intron (ENSMUSG00000027763.13, intron 2 of 3) protein_coding-intron (ENSMUSG00000027763.13, intron 2 of 9) 30549 ENSMUSG00000104235.1 ENSMUSG00000104235 ENSMUST00000193609 Gm37589 TEC Interval_170324 chr9 107028474 107028797 + 0 NA intron (ENSMUSG00000039716.12, intron 10 of 52) protein_coding-intron (ENSMUSG00000039716.12, intron 10 of 52) -19168 ENSMUSG00000075469.3 ENSMUSG00000075469 ENSMUST00000168370 Gm17205 processed_pseudogene Interval_37992 chr12 73679513 73679800 + 0 NA intron (ENSMUSG00000021108.18, intron 3 of 14) protein_coding-intron (ENSMUSG00000021108.18, intron 2 of 13) 94860 ENSMUSG00000021108.18 ENSMUSG00000021108 ENSMUST00000220898 Prkch protein_coding Interval_130278 chr5 125371114 125371916 + 0 NA TTS (ENSMUSG00000104932.1) lincRNA-TTS (ENSMUSG00000104932.1) 10340 ENSMUSG00000104932.1 ENSMUSG00000104932 ENSMUST00000200649 Gm40323 lincRNA Interval_131220 chr5 135887530 135889423 + 0 NA intron (ENSMUSG00000004951.10, intron 1 of 1) protein_coding-intron (ENSMUSG00000004951.10, intron 1 of 2) 458 ENSMUSG00000004951.10 ENSMUSG00000004951 ENSMUST00000111155 Hspb1 protein_coding Interval_141918 chr6 135362340 135364603 + 0 NA exon (ENSMUSG00000030208.15, exon 1 of 1) protein_coding-exon (ENSMUSG00000030208.15, exon 1 of 1) 926 ENSMUSG00000030208.15 ENSMUSG00000030208 ENSMUST00000111907 Emp1 protein_coding Interval_146587 chr7 47072618 47073017 + 0 NA intron (ENSMUSG00000111473.1, intron 1 of 17) unitary_pseudogene-intron (ENSMUSG00000111473.1, intron 1 of 17) 1870 ENSMUSG00000111473.1 ENSMUSG00000111473 ENSMUST00000217248 LOC102637012 unitary_pseudogene Interval_106521 chr3 96886259 96886534 + 0 NA intron (ENSMUSG00000028096.13, intron 5 of 6) protein_coding-intron (ENSMUSG00000028096.13, intron 7 of 13) 12151 ENSMUSG00000028096.13 ENSMUSG00000028096 ENSMUST00000154750 Gpr89 protein_coding Interval_159019 chr8 88849640 88849838 + 0 NA Intergenic Intergenic 13335 ENSMUSG00000109778.1 ENSMUSG00000109778 ENSMUST00000211407 Gm45504 TEC Interval_120840 chr4 150956386 150957319 + 0 NA intron (ENSMUSG00000014592.21, intron 24 of 24) protein_coding-intron (ENSMUSG00000014592.21, intron 24 of 24) -7883 ENSMUSG00000064476.1 ENSMUSG00000064476 ENSMUST00000082542 Gm23405 snRNA Interval_126706 chr5 92154893 92155789 + 0 NA intron (ENSMUSG00000029407.10, intron 3 of 21) protein_coding-intron (ENSMUSG00000029407.10, intron 3 of 23) -14412 ENSMUSG00000084111.4 ENSMUSG00000084111 ENSMUST00000121821 Gm15710 processed_pseudogene Interval_83522 chr18 88828023 88828996 + 0 NA intron (ENSMUSG00000056153.15, intron 2 of 7) protein_coding-intron (ENSMUSG00000056153.15, intron 2 of 7) 1459 ENSMUSG00000117887.1 ENSMUSG00000117887 ENSMUST00000236521 Gm50404 processed_pseudogene Interval_160881 chr8 114521688 114521915 + 0 NA intron (ENSMUSG00000004637.15, intron 5 of 8) protein_coding-intron (ENSMUSG00000004637.15, intron 5 of 8) 73099 ENSMUSG00000090217.1 ENSMUSG00000090217 ENSMUST00000159472 Gm16116 antisense Interval_139491 chr6 100516267 100517073 + 0 NA Intergenic Intergenic -10730 ENSMUSG00000101553.1 ENSMUSG00000101553 ENSMUST00000187986 1700049E22Rik lincRNA Interval_4380 chr1 73530676 73530965 + 0 NA intron (ENSMUSG00000100429.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000100429.1, intron 1 of 1) 1883 ENSMUSG00000100429.1 ENSMUSG00000100429 ENSMUST00000189178 Gm29186 lincRNA Interval_153671 chr8 4412610 4414072 + 0 NA Intergenic Intergenic -10496 ENSMUSG00000109356.1 ENSMUSG00000109356 ENSMUST00000208928 Gm45118 unprocessed_pseudogene Interval_129030 chr5 116898722 116899065 + 0 NA Intergenic Intergenic -68373 ENSMUSG00000106909.1 ENSMUSG00000106909 ENSMUST00000201752 Gm43122 lincRNA Interval_51298 chr14 25824329 25826219 + 0 NA Intergenic Intergenic 2831 ENSMUSG00000077081.1 ENSMUSG00000077081 ENSMUST00000103893 Gm23701 miRNA Interval_61608 chr15 82928659 82929813 + 0 NA intron (ENSMUSG00000041852.15, intron 1 of 1) protein_coding-intron (ENSMUSG00000041852.15, intron 1 of 1) -29425 ENSMUSG00000041852.15 ENSMUSG00000041852 ENSMUST00000229439 Tcf20 protein_coding Interval_511 chr1 6799871 6800244 + 0 NA intron (ENSMUSG00000033740.17, intron 5 of 21) protein_coding-intron (ENSMUSG00000033740.17, intron 7 of 23) 62482 ENSMUSG00000033740.17 ENSMUSG00000033740 ENSMUST00000130338 St18 protein_coding Interval_140986 chr6 123824008 123824871 + 0 NA exon (ENSMUSG00000072780.3, exon 6 of 6) protein_coding-exon (ENSMUSG00000072780.3, exon 6 of 6) -16218 ENSMUSG00000088472.1 ENSMUSG00000088472 ENSMUST00000157847 Gm23079 snoRNA Interval_123611 chr5 33782089 33783517 + 0 NA promoter-TSS (ENSMUSG00000005299.6) protein_coding-promoter-TSS (ENSMUSG00000005299.6) -89 ENSMUSG00000005299.6 ENSMUSG00000005299 ENSMUST00000148451 Letm1 protein_coding Interval_102525 chr3 27483216 27483437 + 0 NA intron (ENSMUSG00000039286.12, intron 12 of 26) protein_coding-intron (ENSMUSG00000039286.12, intron 11 of 25) -63315 ENSMUSG00000106625.1 ENSMUSG00000106625 ENSMUST00000198723 Gm43344 TEC Interval_53970 chr14 63936281 63936952 + 0 NA Intergenic Intergenic -7057 ENSMUSG00000063060.6 ENSMUSG00000063060 ENSMUST00000079652 Sox7 protein_coding Interval_164411 chr9 36814330 36815377 + 0 NA promoter-TSS (ENSMUSG00000098985.1) processed_pseudogene-promoter-TSS (ENSMUSG00000098985.1) -979 ENSMUSG00000098985.1 ENSMUSG00000098985 ENSMUST00000184633 Gm27219 processed_pseudogene Interval_108266 chr3 123138905 123139247 + 0 NA intron (ENSMUSG00000050315.14, intron 1 of 3) protein_coding-intron (ENSMUSG00000050315.14, intron 1 of 4) -3212 ENSMUSG00000106012.1 ENSMUSG00000106012 ENSMUST00000196387 Gm43744 processed_pseudogene Interval_149696 chr7 100706111 100707305 + 0 NA promoter-TSS (ENSMUSG00000029461.17) protein_coding-promoter-TSS (ENSMUSG00000029461.17) 31620 ENSMUSG00000108866.1 ENSMUSG00000108866 ENSMUST00000208164 Gm35082 lincRNA Interval_16613 chr10 65697370 65698073 + 0 NA Intergenic Intergenic 74478 ENSMUSG00000112720.1 ENSMUSG00000112720 ENSMUST00000218592 Gm19116 processed_pseudogene Interval_153254 chr7 142943643 142943928 + 0 NA Intergenic Intergenic -12665 ENSMUSG00000000214.11 ENSMUSG00000000214 ENSMUST00000140344 Th protein_coding Interval_69978 chr17 3753208 3753686 + 0 NA Intergenic Intergenic -57186 ENSMUSG00000023802.4 ENSMUSG00000023802 ENSMUST00000115800 Nox3 protein_coding Interval_124124 chr5 38512853 38513827 + 0 NA Intergenic Intergenic 5877 ENSMUSG00000089646.1 ENSMUSG00000089646 ENSMUST00000162135 Gm15796 processed_pseudogene Interval_164490 chr9 37456400 37456909 + 0 NA Intergenic Intergenic 21989 ENSMUSG00000111702.1 ENSMUSG00000111702 ENSMUST00000214167 Gm47945 unprocessed_pseudogene Interval_30577 chr11 95210314 95211575 + 0 NA Intergenic Intergenic 14688 ENSMUSG00000085992.1 ENSMUSG00000085992 ENSMUST00000150818 Gm11515 lincRNA Interval_17799 chr10 80158536 80161778 + 0 NA Intergenic Intergenic -5828 ENSMUSG00000045193.13 ENSMUSG00000045193 ENSMUST00000147190 Cirbp protein_coding Interval_28059 chr11 72564198 72564771 + 0 NA Intergenic Intergenic 8846 ENSMUSG00000081675.1 ENSMUSG00000081675 ENSMUST00000120676 Gm12712 processed_pseudogene Interval_95068 chr2 103689708 103690515 + 0 NA intron (ENSMUSG00000032724.5, intron 3 of 16) protein_coding-intron (ENSMUSG00000032724.5, intron 3 of 16) -24924 ENSMUSG00000032724.5 ENSMUSG00000032724 ENSMUST00000131122 Abtb2 protein_coding Interval_95612 chr2 112812951 112813187 + 0 NA intron (ENSMUSG00000057378.15, intron 38 of 103) protein_coding-intron (ENSMUSG00000057378.15, intron 38 of 102) -156521 ENSMUSG00000057378.15 ENSMUSG00000057378 ENSMUST00000208135 Ryr3 protein_coding Interval_20559 chr10 119035986 119036251 + 0 NA intron (ENSMUSG00000112778.1, intron 3 of 3) lincRNA-intron (ENSMUSG00000112778.1, intron 3 of 3) 14381 ENSMUSG00000112778.1 ENSMUSG00000112778 ENSMUST00000220074 Gm33677 lincRNA Interval_57786 chr15 19971476 19971674 + 0 NA Intergenic Intergenic 47290 ENSMUSG00000115830.1 ENSMUSG00000115830 ENSMUST00000226614 Gm49176 processed_pseudogene Interval_134449 chr6 28819467 28820058 + 0 NA intron (ENSMUSG00000001424.14, intron 16 of 16) protein_coding-intron (ENSMUSG00000001424.14, intron 16 of 23) 10583 ENSMUSG00000049939.6 ENSMUSG00000049939 ENSMUST00000062304 Lrrc4 protein_coding Interval_10002 chr1 164870605 164871081 + 0 NA exon (ENSMUSG00000104117.5, exon 5 of 5) processed_transcript-exon (ENSMUSG00000104117.5, exon 5 of 5) 5510 ENSMUSG00000103320.1 ENSMUSG00000103320 ENSMUST00000193775 Gm37403 TEC Interval_38504 chr12 79695042 79696348 + 0 NA intron (ENSMUSG00000059060.15, intron 8 of 10) protein_coding-intron (ENSMUSG00000059060.15, intron 8 of 10) 229799 ENSMUSG00000112765.1 ENSMUSG00000112765 ENSMUST00000219857 9430078K24Rik lincRNA Interval_20072 chr10 113194756 113195461 + 0 NA Intergenic Intergenic 81719 ENSMUSG00000112228.1 ENSMUSG00000112228 ENSMUST00000220016 Gm47524 lincRNA Interval_29569 chr11 84967182 84967397 + 0 NA Intergenic Intergenic 9464 ENSMUSG00000000805.18 ENSMUSG00000000805 ENSMUST00000108076 Car4 protein_coding Interval_121019 chr4 152253074 152253453 + 0 NA exon (ENSMUSG00000028937.14, exon 7 of 9) protein_coding-exon (ENSMUSG00000028937.14, exon 7 of 9) -29107 ENSMUSG00000042804.13 ENSMUSG00000042804 ENSMUST00000144035 Gpr153 protein_coding Interval_120624 chr4 149745983 149746309 + 0 NA intron (ENSMUSG00000028982.9, intron 6 of 6) protein_coding-intron (ENSMUSG00000028982.9, intron 6 of 6) -2372 ENSMUSG00000085403.1 ENSMUSG00000085403 ENSMUST00000129397 Gm13068 antisense Interval_171805 chr9 121303251 121304075 + 0 NA intron (ENSMUSG00000032536.12, intron 1 of 1) protein_coding-intron (ENSMUSG00000032536.12, intron 1 of 1) 6151 ENSMUSG00000032536.12 ENSMUSG00000032536 ENSMUST00000209446 Trak1 protein_coding Interval_68948 chr16 89629154 89629582 + 0 NA Intergenic Intergenic 4772 ENSMUSG00000116651.1 ENSMUSG00000116651 ENSMUST00000232201 Gm17844 processed_pseudogene Interval_41502 chr12 115373214 115373434 + 0 NA promoter-TSS (ENSMUSG00000102765.1) IG_V_pseudogene-promoter-TSS (ENSMUSG00000102765.1) -891 ENSMUSG00000102765.1 ENSMUSG00000102765 ENSMUST00000193406 Ighv1-62 IG_V_pseudogene Interval_172854 chrX 52163664 52165804 + 0 NA exon (ENSMUSG00000031119.4, exon 1 of 9) protein_coding-exon (ENSMUSG00000031119.4, exon 1 of 9) 518 ENSMUSG00000031119.4 ENSMUSG00000031119 ENSMUST00000033450 Gpc4 protein_coding Interval_1957 chr1 34896791 34897105 + 0 NA Intergenic Intergenic 19292 ENSMUSG00000026123.11 ENSMUSG00000026123 ENSMUST00000191722 Plekhb2 protein_coding Interval_44358 chr13 44121508 44122522 + 0 NA intron (ENSMUSG00000089815.7, intron 1 of 4) lincRNA-intron (ENSMUSG00000089815.7, intron 1 of 4) 848 ENSMUSG00000089815.7 ENSMUSG00000089815 ENSMUST00000159595 Gm5083 lincRNA Interval_2809 chr1 45654041 45654795 + 0 NA Intergenic Intergenic 31144 ENSMUSG00000095121.1 ENSMUSG00000095121 ENSMUST00000179545 Gm23216 snRNA Interval_67486 chr16 49792933 49793611 + 0 NA intron (ENSMUSG00000087066.1, intron 1 of 2) antisense-intron (ENSMUSG00000087066.1, intron 1 of 2) 5598 ENSMUSG00000087066.1 ENSMUSG00000087066 ENSMUST00000127115 Gm15518 antisense Interval_23490 chr11 22912694 22912887 + 0 NA intron (ENSMUSG00000051355.18, intron 1 of 1) protein_coding-intron (ENSMUSG00000051355.18, intron 3 of 3) 43889 ENSMUSG00000065869.1 ENSMUSG00000065869 ENSMUST00000083935 Gm24917 snRNA Interval_140805 chr6 121499001 121499631 + 0 NA Intergenic Intergenic -25651 ENSMUSG00000040797.16 ENSMUSG00000040797 ENSMUST00000151397 Iqsec3 protein_coding Interval_94992 chr2 102682055 102682420 + 0 NA intron (ENSMUSG00000005089.15, intron 1 of 1) protein_coding-intron (ENSMUSG00000005089.15, intron 1 of 10) 64523 ENSMUSG00000087185.1 ENSMUSG00000087185 ENSMUST00000147082 Gm13872 antisense Interval_3067 chr1 52844497 52845467 + 0 NA promoter-TSS (ENSMUSG00000041426.12) protein_coding-promoter-TSS (ENSMUSG00000041426.12) 53 ENSMUSG00000041426.12 ENSMUSG00000041426 ENSMUST00000162609 Hibch protein_coding Interval_102219 chr3 19561432 19563076 + 0 NA intron (ENSMUSG00000027606.12, intron 2 of 4) protein_coding-intron (ENSMUSG00000027606.12, intron 2 of 4) 2001 ENSMUSG00000096211.1 ENSMUSG00000096211 ENSMUST00000082660 Gm23330 snRNA Interval_5068 chr1 84778427 84778722 + 0 NA intron (ENSMUSG00000026219.14, intron 5 of 19) protein_coding-intron (ENSMUSG00000026219.14, intron 5 of 40) 30616 ENSMUSG00000103505.1 ENSMUSG00000103505 ENSMUST00000194417 Gm38374 TEC Interval_12451 chr1 193550559 193551703 + 0 NA Intergenic Intergenic -40957 ENSMUSG00000097850.2 ENSMUSG00000097850 ENSMUST00000180420 Mir205hg lincRNA Interval_55752 chr14 99580977 99581194 + 0 NA Intergenic Intergenic 38931 ENSMUSG00000115550.1 ENSMUSG00000115550 ENSMUST00000226602 Gm49225 lincRNA Interval_56401 chr14 118511526 118512283 + 0 NA intron (ENSMUSG00000032849.14, intron 25 of 29) protein_coding-intron (ENSMUSG00000032849.14, intron 26 of 30) -52168 ENSMUSG00000115075.1 ENSMUSG00000115075 ENSMUST00000227627 Gm49033 processed_pseudogene Interval_136335 chr6 53207232 53209408 + 0 NA Intergenic Intergenic -12844 ENSMUSG00000107935.1 ENSMUSG00000107935 ENSMUST00000205210 Gm4872 lincRNA Interval_90717 chr2 32083167 32084922 + 0 NA promoter-TSS (ENSMUSG00000050592.8) protein_coding-promoter-TSS (ENSMUSG00000050592.8) 813 ENSMUSG00000050592.8 ENSMUSG00000050592 ENSMUST00000143795 Fam78a protein_coding Interval_20816 chr10 121252629 121253006 + 0 NA Intergenic Intergenic 9815 ENSMUSG00000112871.1 ENSMUSG00000112871 ENSMUST00000219186 Gm35404 lincRNA Interval_118976 chr4 134806045 134806232 + 0 NA exon (ENSMUSG00000028826.14, exon 3 of 3) protein_coding-exon (ENSMUSG00000028826.14, exon 3 of 3) 5075 ENSMUSG00000028826.14 ENSMUSG00000028826 ENSMUST00000136113 Maco1 protein_coding Interval_124511 chr5 49863089 49863477 + 0 NA Intergenic Intergenic 39019 ENSMUSG00000105540.1 ENSMUSG00000105540 ENSMUST00000196623 Gm7988 processed_pseudogene Interval_18196 chr10 83620292 83621453 + 0 NA TTS (ENSMUSG00000020263.14) protein_coding-TTS (ENSMUSG00000020263.14) -17742 ENSMUSG00000020263.14 ENSMUSG00000020263 ENSMUST00000176294 Appl2 protein_coding Interval_125221 chr5 65466538 65467411 + 0 NA exon (ENSMUSG00000037822.12, exon 2 of 2) protein_coding-exon (ENSMUSG00000037822.12, exon 2 of 2) -8463 ENSMUSG00000037822.12 ENSMUSG00000037822 ENSMUST00000198981 Smim14 protein_coding Interval_55480 chr14 88326656 88326928 + 0 NA intron (ENSMUSG00000115479.1, intron 2 of 3) lincRNA-intron (ENSMUSG00000115479.1, intron 2 of 3) 10752 ENSMUSG00000115479.1 ENSMUSG00000115479 ENSMUST00000226380 Gm33203 lincRNA Interval_98343 chr2 151620019 151620619 + 0 NA TTS (ENSMUSG00000027457.15) protein_coding-TTS (ENSMUSG00000027457.15) 12242 ENSMUSG00000027457.15 ENSMUSG00000027457 ENSMUST00000133378 Snph protein_coding Interval_50408 chr14 12575014 12575669 + 0 NA intron (ENSMUSG00000054423.14, intron 6 of 28) protein_coding-intron (ENSMUSG00000054423.14, intron 6 of 28) -43327 ENSMUSG00000114453.1 ENSMUSG00000114453 ENSMUST00000225784 Gm17805 processed_pseudogene Interval_8620 chr1 144141069 144141883 + 0 NA intron (ENSMUSG00000051079.8, intron 4 of 5) protein_coding-intron (ENSMUSG00000051079.8, intron 4 of 5) 35799 ENSMUSG00000051079.8 ENSMUSG00000051079 ENSMUST00000111941 Rgs13 protein_coding Interval_71331 chr17 22347957 22349089 + 0 NA intron (ENSMUSG00000033972.9, intron 3 of 5) protein_coding-intron (ENSMUSG00000033972.9, intron 3 of 5) 12877 ENSMUSG00000033972.9 ENSMUSG00000033972 ENSMUST00000115535 Zfp944 protein_coding Interval_159015 chr8 88814018 88814262 + 0 NA Intergenic Intergenic 7749 ENSMUSG00000056772.3 ENSMUSG00000056772 ENSMUST00000079841 Rps6-ps2 processed_pseudogene Interval_60559 chr15 74949069 74950283 + 0 NA Intergenic Intergenic 3804 ENSMUSG00000099600.1 ENSMUSG00000099600 ENSMUST00000188686 Gm29126 unprocessed_pseudogene Interval_116690 chr4 116662135 116662725 + 0 NA Intergenic Intergenic -11723 ENSMUSG00000065185.1 ENSMUSG00000065185 ENSMUST00000083251 Gm25137 snRNA Interval_36736 chr12 52772904 52774953 + 0 NA intron (ENSMUSG00000061603.8, intron 1 of 13) protein_coding-intron (ENSMUSG00000061603.8, intron 1 of 13) -20820 ENSMUSG00000112251.1 ENSMUSG00000112251 ENSMUST00000219288 Gm47488 processed_pseudogene Interval_151032 chr7 118056000 118056871 + 0 NA Intergenic Intergenic 58821 ENSMUSG00000008683.16 ENSMUSG00000008683 ENSMUST00000128482 Rps15a protein_coding Interval_151713 chr7 126216780 126217595 + 0 NA Intergenic Intergenic 25440 ENSMUSG00000108309.1 ENSMUSG00000108309 ENSMUST00000205724 Gm44703 processed_pseudogene Interval_20131 chr10 115171698 115171960 + 0 NA intron (ENSMUSG00000006764.8, intron 5 of 10) protein_coding-intron (ENSMUSG00000006764.8, intron 5 of 10) 3729 ENSMUSG00000006764.8 ENSMUSG00000006764 ENSMUST00000155794 Tph2 protein_coding Interval_158965 chr8 88284800 88286160 + 0 NA intron (ENSMUSG00000031659.13, intron 1 of 27) protein_coding-intron (ENSMUSG00000031659.13, intron 1 of 27) -14899 ENSMUSG00000031659.13 ENSMUSG00000031659 ENSMUST00000210688 Adcy7 protein_coding Interval_47012 chr13 74349642 74350758 + 0 NA promoter-TSS (ENSMUSG00000021577.14) protein_coding-promoter-TSS (ENSMUSG00000021577.14) 1 ENSMUSG00000021577.14 ENSMUSG00000021577 ENSMUST00000161456 Sdha protein_coding Interval_89040 chr2 14913636 14913921 + 0 NA intron (ENSMUSG00000057914.15, intron 2 of 7) protein_coding-intron (ENSMUSG00000057914.15, intron 2 of 7) -31130 ENSMUSG00000102673.1 ENSMUSG00000102673 ENSMUST00000194451 Gm37437 TEC Interval_64897 chr16 17054257 17054712 + 0 NA Intergenic Intergenic 6964 ENSMUSG00000084792.1 ENSMUSG00000084792 ENSMUST00000141875 1700056N10Rik lincRNA Interval_61078 chr15 79097694 79099322 + 0 NA Intergenic Intergenic -3451 ENSMUSG00000092974.2 ENSMUSG00000092974 ENSMUST00000175233 Gm25072 misc_RNA Interval_108370 chr3 126251587 126251769 + 0 NA Intergenic Intergenic 25351 ENSMUSG00000106503.1 ENSMUSG00000106503 ENSMUST00000197058 Gm42827 lincRNA Interval_25528 chr11 49588964 49590855 + 0 NA Intergenic Intergenic -1447 ENSMUSG00000069890.3 ENSMUSG00000069890 ENSMUST00000093146 1700024J04Rik pseudogene Interval_130810 chr5 130858123 130858623 + 0 NA Intergenic Intergenic 9464 ENSMUSG00000106694.1 ENSMUSG00000106694 ENSMUST00000200788 Gm42894 TEC Interval_151533 chr7 123326745 123327694 + 0 NA intron (ENSMUSG00000030766.15, intron 3 of 19) protein_coding-intron (ENSMUSG00000030766.15, intron 3 of 18) 42632 ENSMUSG00000030766.15 ENSMUSG00000030766 ENSMUST00000205805 Arhgap17 protein_coding Interval_45407 chr13 54930111 54930323 + 0 NA promoter-TSS (ENSMUSG00000087335.2) lincRNA-promoter-TSS (ENSMUSG00000087335.2) 39 ENSMUSG00000087335.2 ENSMUSG00000087335 ENSMUST00000144718 4930526F13Rik lincRNA Interval_42090 chr13 8537465 8537735 + 0 NA intron (ENSMUSG00000052551.16, intron 1 of 10) protein_coding-intron (ENSMUSG00000052551.16, intron 1 of 9) -15420 ENSMUSG00000113742.1 ENSMUSG00000113742 ENSMUST00000220604 Gm48262 TEC Interval_120530 chr4 149166200 149167399 + 0 NA promoter-TSS (ENSMUSG00000028961.15) protein_coding-promoter-TSS (ENSMUSG00000028961.15) -28 ENSMUSG00000028961.15 ENSMUSG00000028961 ENSMUST00000143944 Pgd protein_coding Interval_54211 chr14 66302454 66304117 + 0 NA intron (ENSMUSG00000022043.19, intron 2 of 4) protein_coding-intron (ENSMUSG00000022043.19, intron 2 of 5) -6156 ENSMUSG00000085984.7 ENSMUSG00000085984 ENSMUST00000143392 1700001G11Rik processed_transcript Interval_91872 chr2 50880689 50881080 + 0 NA Intergenic Intergenic -28800 ENSMUSG00000083270.1 ENSMUSG00000083270 ENSMUST00000119159 Gm13498 processed_pseudogene Interval_58384 chr15 34045764 34046921 + 0 NA Intergenic Intergenic -6776 ENSMUSG00000115440.1 ENSMUSG00000115440 ENSMUST00000227515 Gm49091 processed_pseudogene Interval_121779 chr5 7996586 7996944 + 0 NA Intergenic Intergenic 36308 ENSMUSG00000012428.9 ENSMUSG00000012428 ENSMUST00000115421 Steap4 protein_coding Interval_132565 chr5 146360086 146360804 + 0 NA Intergenic Intergenic 74269 ENSMUSG00000029635.15 ENSMUSG00000029635 ENSMUST00000160924 Cdk8 protein_coding Interval_173775 chrX 103980182 103982335 + 0 NA promoter-TSS (ENSMUSG00000056537.11) protein_coding-promoter-TSS (ENSMUSG00000056537.11) 26 ENSMUSG00000056537.11 ENSMUSG00000056537 ENSMUST00000135101 Rlim protein_coding Interval_28639 chr11 77491176 77491728 + 0 NA Intergenic Intergenic -7639 ENSMUSG00000011877.13 ENSMUSG00000011877 ENSMUST00000128796 Git1 protein_coding Interval_5417 chr1 88631747 88632159 + 0 NA Intergenic Intergenic -21132 ENSMUSG00000104057.1 ENSMUSG00000104057 ENSMUST00000194311 Gm38130 TEC Interval_53688 chr14 60894702 60896238 + 0 NA intron (ENSMUSG00000021993.10, intron 18 of 19) protein_coding-intron (ENSMUSG00000021993.10, intron 18 of 18) 110888 ENSMUSG00000021993.10 ENSMUSG00000021993 ENSMUST00000223709 Mipep protein_coding Interval_58142 chr15 28899800 28900024 + 0 NA Intergenic Intergenic 44908 ENSMUSG00000115459.1 ENSMUSG00000115459 ENSMUST00000226719 Gm49280 TEC Interval_159206 chr8 91662804 91663144 + 0 NA intron (ENSMUSG00000055932.15, intron 5 of 5) protein_coding-intron (ENSMUSG00000055932.15, intron 8 of 8) 8923 ENSMUSG00000110302.1 ENSMUSG00000110302 ENSMUST00000210393 Gm45295 TEC Interval_28474 chr11 76232438 76233013 + 0 NA TTS (ENSMUSG00000017286.15) protein_coding-TTS (ENSMUSG00000017286.15) 10734 ENSMUSG00000017286.15 ENSMUSG00000017286 ENSMUST00000168055 Glod4 protein_coding Interval_146670 chr7 49313417 49313637 + 0 NA intron (ENSMUSG00000052512.17, intron 1 of 6) protein_coding-intron (ENSMUSG00000052512.17, intron 1 of 37) -29947 ENSMUSG00000052512.17 ENSMUSG00000052512 ENSMUST00000183715 Nav2 protein_coding Interval_156421 chr8 48023326 48024053 + 0 NA Intergenic Intergenic -14556 ENSMUSG00000110624.1 ENSMUSG00000110624 ENSMUST00000212073 Gm32052 lincRNA Interval_10311 chr1 168402359 168403019 + 0 NA intron (ENSMUSG00000052534.15, intron 2 of 7) protein_coding-intron (ENSMUSG00000052534.15, intron 2 of 6) 29581 ENSMUSG00000052534.15 ENSMUSG00000052534 ENSMUST00000176791 Pbx1 protein_coding Interval_9948 chr1 164319898 164320107 + 0 NA intron (ENSMUSG00000026575.15, intron 4 of 15) protein_coding-intron (ENSMUSG00000026575.15, intron 1 of 7) 12275 ENSMUSG00000026575.15 ENSMUSG00000026575 ENSMUST00000192710 Nme7 protein_coding Interval_145149 chr7 30300728 30301351 + 0 NA intron (ENSMUSG00000013921.15, intron 7 of 13) protein_coding-intron (ENSMUSG00000013921.15, intron 7 of 13) 9310 ENSMUSG00000013921.15 ENSMUSG00000013921 ENSMUST00000132844 Clip3 protein_coding Interval_155247 chr8 28760544 28760839 + 0 NA intron (ENSMUSG00000063626.6, intron 5 of 14) protein_coding-intron (ENSMUSG00000063626.6, intron 6 of 17) 167159 ENSMUSG00000097776.1 ENSMUSG00000097776 ENSMUST00000181267 Gm26795 lincRNA Interval_155581 chr8 34818290 34818737 + 0 NA exon (ENSMUSG00000031530.6, exon 4 of 4) protein_coding-exon (ENSMUSG00000031530.6, exon 4 of 4) 11216 ENSMUSG00000031530.6 ENSMUSG00000031530 ENSMUST00000033930 Dusp4 protein_coding Interval_147014 chr7 58241845 58242515 + 0 NA Intergenic Intergenic -93953 ENSMUSG00000077356.1 ENSMUSG00000077356 ENSMUST00000104168 Gm26288 snoRNA Interval_113548 chr4 56391885 56392936 + 0 NA Intergenic Intergenic 4608 ENSMUSG00000082613.1 ENSMUSG00000082613 ENSMUST00000122075 Gm12518 processed_pseudogene Interval_71411 chr17 23598622 23599712 + 0 NA exon (ENSMUSG00000062012.14, exon 1 of 6) protein_coding-exon (ENSMUSG00000062012.14, exon 1 of 6) -1695 ENSMUSG00000023902.18 ENSMUSG00000023902 ENSMUST00000133749 Zscan10 protein_coding Interval_154072 chr8 12477349 12478779 + 0 NA Intergenic Intergenic -11100 ENSMUSG00000109921.1 ENSMUSG00000109921 ENSMUST00000209741 Gm33326 lincRNA Interval_174104 chrX 134807608 134809139 + 0 NA promoter-TSS (ENSMUSG00000033436.13) protein_coding-promoter-TSS (ENSMUSG00000033436.13) 848 ENSMUSG00000033436.13 ENSMUSG00000033436 ENSMUST00000149902 Armcx2 protein_coding Interval_71444 chr17 23779369 23780270 + 0 NA promoter-TSS (ENSMUSG00000023911.12) protein_coding-promoter-TSS (ENSMUSG00000023911.12) 6233 ENSMUSG00000023911.12 ENSMUSG00000023911 ENSMUST00000127144 Flywch2 protein_coding Interval_113102 chr4 48239561 48239767 + 0 NA intron (ENSMUSG00000028343.10, intron 3 of 3) protein_coding-intron (ENSMUSG00000028343.10, intron 3 of 11) -26449 ENSMUSG00000087844.1 ENSMUSG00000087844 ENSMUST00000157219 Mir1958 miRNA Interval_40542 chr12 105598786 105599965 + 0 NA Intergenic Intergenic -3744 ENSMUSG00000041347.5 ENSMUSG00000041347 ENSMUST00000041229 Bdkrb1 protein_coding Interval_148367 chr7 80815812 80817922 + 0 NA promoter-TSS (ENSMUSG00000030536.10) protein_coding-promoter-TSS (ENSMUSG00000030536.10) -13604 ENSMUSG00000030536.10 ENSMUSG00000030536 ENSMUST00000205540 Iqgap1 protein_coding Interval_823 chr1 11961314 11961862 + 0 NA intron (ENSMUSG00000057715.13, intron 11 of 12) protein_coding-intron (ENSMUSG00000057715.13, intron 12 of 13) -159372 ENSMUSG00000101610.1 ENSMUSG00000101610 ENSMUST00000187748 Gm7560 processed_pseudogene Interval_135668 chr6 42796177 42796813 + 0 NA Intergenic Intergenic -4248 ENSMUSG00000108058.1 ENSMUSG00000108058 ENSMUST00000205127 Olfr451-ps1 polymorphic_pseudogene Interval_170475 chr9 108218206 108219032 + 0 NA intron (ENSMUSG00000039952.15, intron 1 of 2) protein_coding-intron (ENSMUSG00000039952.15, intron 2 of 3) -27271 ENSMUSG00000102538.1 ENSMUSG00000102538 ENSMUST00000194491 Gm37230 TEC Interval_109922 chr3 151706232 151706453 + 0 NA Intergenic Intergenic 43540 ENSMUSG00000028037.13 ENSMUSG00000028037 ENSMUST00000127733 Ifi44 protein_coding Interval_14430 chr10 33605712 33606216 + 0 NA intron (ENSMUSG00000019785.14, intron 1 of 4) protein_coding-intron (ENSMUSG00000019785.14, intron 2 of 5) 15745 ENSMUSG00000112369.1 ENSMUSG00000112369 ENSMUST00000217704 Gm47911 TEC Interval_39846 chr12 99010800 99011901 + 0 NA Intergenic Intergenic -18341 ENSMUSG00000114021.1 ENSMUSG00000114021 ENSMUST00000221939 Gm47109 lincRNA Interval_32434 chr11 107526852 107527983 + 0 NA promoter-TSS (ENSMUSG00000085864.1) lincRNA-promoter-TSS (ENSMUSG00000085864.1) -197 ENSMUSG00000085864.1 ENSMUSG00000085864 ENSMUST00000149428 C330019F10Rik lincRNA Interval_116600 chr4 115984225 115985463 + 0 NA intron (ENSMUSG00000034171.13, intron 13 of 14) protein_coding-intron (ENSMUSG00000034171.13, intron 13 of 14) 15093 ENSMUSG00000034171.13 ENSMUSG00000034171 ENSMUST00000150614 Faah protein_coding Interval_80148 chr18 37877213 37878193 + 0 NA intron (ENSMUSG00000024456.16, intron 16 of 25) protein_coding-intron (ENSMUSG00000024456.16, intron 18 of 27) 20239 ENSMUSG00000024456.16 ENSMUSG00000024456 ENSMUST00000129688 Diaph1 protein_coding Interval_36745 chr12 52880309 52880784 + 0 NA intron (ENSMUSG00000061603.8, intron 1 of 11) protein_coding-intron (ENSMUSG00000061603.8, intron 2 of 13) 84710 ENSMUSG00000061603.8 ENSMUSG00000061603 ENSMUST00000219786 Akap6 protein_coding Interval_108744 chr3 130962155 130962420 + 0 NA Intergenic Intergenic -24950 ENSMUSG00000106095.2 ENSMUSG00000106095 ENSMUST00000196438 2010110G14Rik lincRNA Interval_171340 chr9 116511283 116511928 + 0 NA Intergenic Intergenic 180437 ENSMUSG00000110752.1 ENSMUSG00000110752 ENSMUST00000217456 D730003K21Rik lincRNA Interval_29989 chr11 88560918 88561594 + 0 NA intron (ENSMUSG00000069769.13, intron 1 of 5) protein_coding-intron (ENSMUSG00000069769.13, intron 6 of 13) 28891 ENSMUSG00000069769.13 ENSMUSG00000069769 ENSMUST00000126293 Msi2 protein_coding Interval_85111 chr19 22960415 22960634 + 0 NA intron (ENSMUSG00000052387.16, intron 21 of 24) protein_coding-intron (ENSMUSG00000052387.16, intron 22 of 26) -100930 ENSMUSG00000118155.1 ENSMUSG00000118155 ENSMUST00000235686 Gm50136 lincRNA Interval_136817 chr6 60896533 60896897 + 0 NA Intergenic Intergenic -13752 ENSMUSG00000108262.1 ENSMUSG00000108262 ENSMUST00000203860 Gm43867 processed_pseudogene Interval_109196 chr3 137842953 137843312 + 0 NA Intergenic Intergenic 21051 ENSMUSG00000105676.1 ENSMUSG00000105676 ENSMUST00000198830 Gm43403 antisense Interval_91111 chr2 35171193 35171389 + 0 NA intron (ENSMUSG00000057110.15, intron 37 of 42) protein_coding-intron (ENSMUSG00000057110.15, intron 37 of 43) 26195 ENSMUSG00000057110.15 ENSMUSG00000057110 ENSMUST00000143807 Cntrl protein_coding Interval_32970 chr11 113431036 113431894 + 0 NA intron (ENSMUSG00000041654.15, intron 5 of 5) protein_coding-intron (ENSMUSG00000041654.15, intron 6 of 10) -36512 ENSMUSG00000078251.2 ENSMUSG00000078251 ENSMUST00000105048 Gm16487 pseudogene Interval_162472 chr8 129225802 129226730 + 0 NA intron (ENSMUSG00000071302.10, intron 1 of 3) protein_coding-intron (ENSMUSG00000071302.10, intron 1 of 3) 7747 ENSMUSG00000071302.10 ENSMUSG00000071302 ENSMUST00000189965 2610044O15Rik8 protein_coding Interval_41536 chr12 116070819 116071454 + 0 NA Intergenic Intergenic -6637 ENSMUSG00000011171.11 ENSMUSG00000011171 ENSMUST00000176433 Vipr2 protein_coding Interval_15873 chr10 58628881 58629100 + 0 NA intron (ENSMUSG00000003227.4, intron 3 of 11) protein_coding-intron (ENSMUSG00000003227.4, intron 3 of 11) 46664 ENSMUSG00000003227.4 ENSMUSG00000003227 ENSMUST00000003312 Edar protein_coding Interval_76091 chr17 74861282 74861889 + 0 NA promoter-TSS (ENSMUSG00000117441.1) antisense-promoter-TSS (ENSMUSG00000117441.1) -651 ENSMUSG00000117441.1 ENSMUSG00000117441 ENSMUST00000234097 Gm50021 antisense Interval_156358 chr8 47689144 47690839 + 0 NA Intergenic Intergenic 14600 ENSMUSG00000074357.3 ENSMUSG00000074357 ENSMUST00000211481 AA386476 bidirectional_promoter_lncRNA Interval_29957 chr11 88378594 88379451 + 0 NA intron (ENSMUSG00000069769.13, intron 5 of 5) protein_coding-intron (ENSMUSG00000069769.13, intron 10 of 13) 22731 ENSMUSG00000085246.1 ENSMUSG00000085246 ENSMUST00000143208 Gm15893 antisense Interval_18045 chr10 81523642 81525529 + 0 NA promoter-TSS (ENSMUSG00000034792.8) protein_coding-promoter-TSS (ENSMUSG00000034792.8) -826 ENSMUSG00000112350.1 ENSMUSG00000112350 ENSMUST00000218454 Gm47697 lincRNA Interval_73695 chr17 42846701 42847461 + 0 NA intron (ENSMUSG00000061665.7, intron 1 of 10) protein_coding-intron (ENSMUSG00000061665.7, intron 2 of 17) -16051 ENSMUSG00000061665.7 ENSMUSG00000061665 ENSMUST00000233626 Cd2ap protein_coding Interval_24969 chr11 42216616 42217020 + 0 NA Intergenic Intergenic -34714 ENSMUSG00000010803.13 ENSMUSG00000010803 ENSMUST00000206085 Gabra1 protein_coding Interval_74179 chr17 46920837 46921469 + 0 NA TTS (ENSMUSG00000023978.5) protein_coding-TTS (ENSMUSG00000023978.5) 10675 ENSMUSG00000023978.5 ENSMUSG00000023978 ENSMUST00000162469 Prph2 protein_coding Interval_8733 chr1 150187144 150187463 + 0 NA Intergenic Intergenic -22355 ENSMUSG00000097754.1 ENSMUSG00000097754 ENSMUST00000181308 Ptgs2os2 lincRNA Interval_78074 chr18 7677305 7677647 + 0 NA Intergenic Intergenic 15250 ENSMUSG00000117542.1 ENSMUSG00000117542 ENSMUST00000234387 Gm18763 processed_pseudogene Interval_98319 chr2 150984194 150984634 + 0 NA intron (ENSMUSG00000068115.13, intron 1 of 4) protein_coding-intron (ENSMUSG00000068115.13, intron 1 of 23) -7768 ENSMUSG00000082375.1 ENSMUSG00000082375 ENSMUST00000120236 Gm14141 processed_pseudogene Interval_57469 chr15 11436605 11437532 + 0 NA Intergenic Intergenic -37467 ENSMUSG00000022241.6 ENSMUSG00000022241 ENSMUST00000226904 Tars protein_coding Interval_20077 chr10 113432438 113433880 + 0 NA intron (ENSMUSG00000112767.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000112767.1, intron 1 of 2) 8975 ENSMUSG00000112767.1 ENSMUSG00000112767 ENSMUST00000218916 Gm47532 lincRNA Interval_63386 chr15 100754119 100755425 + 0 NA Intergenic Intergenic -22035 ENSMUSG00000116504.1 ENSMUSG00000116504 ENSMUST00000230334 I730030J21Rik processed_transcript Interval_81951 chr18 66254474 66255556 + 0 NA intron (ENSMUSG00000046318.16, intron 1 of 9) protein_coding-intron (ENSMUSG00000046318.16, intron 2 of 11) -35682 ENSMUSG00000076147.1 ENSMUSG00000076147 ENSMUST00000102193 Mir694 miRNA Interval_12533 chr1 194938280 194939519 + 0 NA promoter-TSS (ENSMUSG00000016494.9) protein_coding-promoter-TSS (ENSMUSG00000016494.9) -52 ENSMUSG00000016494.9 ENSMUSG00000016494 ENSMUST00000194036 Cd34 protein_coding Interval_11638 chr1 183687689 183687978 + 0 NA Intergenic Intergenic -5702 ENSMUSG00000090533.2 ENSMUSG00000090533 ENSMUST00000172123 Gm8214 processed_pseudogene Interval_92273 chr2 57828040 57828753 + 0 NA Intergenic Intergenic 157621 ENSMUSG00000110205.1 ENSMUSG00000110205 ENSMUST00000209502 Gm33594 lincRNA Interval_131332 chr5 136535928 136536642 + 0 NA exon (ENSMUSG00000104369.1, exon 1 of 1) TEC-exon (ENSMUSG00000104369.1, exon 1 of 1) 192 ENSMUSG00000104369.1 ENSMUSG00000104369 ENSMUST00000192800 Gm38082 TEC Interval_7021 chr1 122455321 122455738 + 0 NA Intergenic Intergenic -55020 ENSMUSG00000089274.1 ENSMUSG00000089274 ENSMUST00000158649 Gm24547 snRNA Interval_67564 chr16 50840924 50842288 + 0 NA Intergenic Intergenic 58128 ENSMUSG00000092276.2 ENSMUSG00000092276 ENSMUST00000174511 1700116B05Rik lincRNA Interval_41125 chr12 111337853 111339138 + 0 NA intron (ENSMUSG00000021279.5, intron 4 of 36) protein_coding-intron (ENSMUSG00000021279.5, intron 4 of 36) -23958 ENSMUSG00000021279.5 ENSMUSG00000021279 ENSMUST00000222196 Cdc42bpb protein_coding Interval_40762 chr12 108223126 108223611 + 0 NA intron (ENSMUSG00000084883.2, intron 1 of 5) protein_coding-intron (ENSMUSG00000084883.2, intron 1 of 6) 24283 ENSMUSG00000021258.10 ENSMUSG00000021258 ENSMUST00000223363 Ccnk protein_coding Interval_20341 chr10 116995662 116996372 + 0 NA intron (ENSMUSG00000020169.4, intron 4 of 9) protein_coding-intron (ENSMUSG00000020169.4, intron 4 of 9) 9703 ENSMUSG00000020169.4 ENSMUSG00000020169 ENSMUST00000020378 Best3 protein_coding Interval_19506 chr10 100741449 100742296 + 0 NA promoter-TSS (ENSMUSG00000112104.1) lincRNA-promoter-TSS (ENSMUSG00000112104.1) -237 ENSMUSG00000112104.1 ENSMUSG00000112104 ENSMUST00000218270 Gm35722 lincRNA Interval_119792 chr4 140020940 140021199 + 0 NA Intergenic Intergenic -53043 ENSMUSG00000078234.6 ENSMUSG00000078234 ENSMUST00000105031 Klhdc7a protein_coding Interval_112197 chr4 35553349 35554857 + 0 NA Intergenic Intergenic 117889 ENSMUSG00000083851.1 ENSMUSG00000083851 ENSMUST00000117931 Gm12365 processed_pseudogene Interval_93480 chr2 73432022 73432612 + 0 NA exon (ENSMUSG00000075284.10, exon 8 of 8) protein_coding-exon (ENSMUSG00000075284.10, exon 8 of 8) 10408 ENSMUSG00000085768.1 ENSMUSG00000085768 ENSMUST00000123663 Gm13707 antisense Interval_161773 chr8 122692183 122692656 + 0 NA intron (ENSMUSG00000006362.16, intron 1 of 1) protein_coding-intron (ENSMUSG00000092329.1, intron 1 of 15) -5441 ENSMUSG00000090174.1 ENSMUSG00000090174 ENSMUST00000162198 Gm10612 antisense Interval_85772 chr19 30763101 30764074 + 0 NA intron (ENSMUSG00000052920.16, intron 1 of 2) protein_coding-intron (ENSMUSG00000052920.16, intron 7 of 17) -33005 ENSMUSG00000052920.16 ENSMUSG00000052920 ENSMUST00000182685 Prkg1 protein_coding Interval_54109 chr14 65377864 65379001 + 0 NA intron (ENSMUSG00000034522.10, intron 1 of 2) protein_coding-intron (ENSMUSG00000034522.10, intron 1 of 2) -19022 ENSMUSG00000114357.1 ENSMUSG00000114357 ENSMUST00000225691 Gm48449 antisense Interval_156461 chr8 48429299 48430303 + 0 NA intron (ENSMUSG00000031561.16, intron 2 of 26) protein_coding-intron (ENSMUSG00000031561.16, intron 2 of 28) 125512 ENSMUSG00000031561.16 ENSMUSG00000031561 ENSMUST00000211812 Tenm3 protein_coding Interval_70860 chr17 15448930 15449613 + 0 NA Intergenic Intergenic -10534 ENSMUSG00000116985.1 ENSMUSG00000116985 ENSMUST00000231639 Gm49669 processed_pseudogene Interval_58393 chr15 34097176 34097447 + 0 NA intron (ENSMUSG00000022255.16, intron 1 of 5) protein_coding-intron (ENSMUSG00000022255.16, intron 1 of 11) -29633 ENSMUSG00000115276.1 ENSMUSG00000115276 ENSMUST00000228274 9930017N22Rik TEC Interval_145042 chr7 29639782 29639996 + 0 NA Intergenic Intergenic 17387 ENSMUSG00000065385.1 ENSMUSG00000065385 ENSMUST00000083451 n-R5s153 rRNA Interval_14438 chr10 33723973 33724159 + 0 NA Intergenic Intergenic 9174 ENSMUSG00000112656.1 ENSMUSG00000112656 ENSMUST00000217937 Gm47929 unprocessed_pseudogene Interval_124628 chr5 52565232 52566846 + 0 NA exon (ENSMUSG00000039252.11, exon 1 of 7) protein_coding-exon (ENSMUSG00000039252.11, exon 1 of 7) 264 ENSMUSG00000039252.11 ENSMUSG00000039252 ENSMUST00000039750 Lgi2 protein_coding Interval_145542 chr7 35496334 35497414 + 0 NA TTS (ENSMUSG00000100068.1) processed_pseudogene-TTS (ENSMUSG00000100068.1) 2843 ENSMUSG00000100068.1 ENSMUSG00000100068 ENSMUST00000186253 Gm18558 processed_pseudogene Interval_87372 chr19 47997564 47997783 + 0 NA intron (ENSMUSG00000046585.9, intron 15 of 17) protein_coding-intron (ENSMUSG00000046585.9, intron 15 of 17) 59998 ENSMUSG00000046585.9 ENSMUSG00000046585 ENSMUST00000066308 Cfap58 protein_coding Interval_50751 chr14 19111524 19111792 + 0 NA Intergenic Intergenic -2758 ENSMUSG00000114445.1 ENSMUSG00000114445 ENSMUST00000225256 Gm7089 processed_pseudogene Interval_145765 chr7 38152078 38152997 + 0 NA Intergenic Intergenic 24134 ENSMUSG00000089230.1 ENSMUSG00000089230 ENSMUST00000158605 Gm22203 snRNA Interval_141995 chr6 136444750 136444985 + 0 NA Intergenic Intergenic 27055 ENSMUSG00000088409.1 ENSMUSG00000088409 ENSMUST00000157784 Gm25882 snRNA Interval_109284 chr3 138642184 138642426 + 0 NA Intergenic Intergenic 1639 ENSMUSG00000105126.1 ENSMUSG00000105126 ENSMUST00000196886 Gm43723 processed_pseudogene Interval_170899 chr9 111767215 111767842 + 0 NA Intergenic Intergenic -77199 ENSMUSG00000032502.8 ENSMUSG00000032502 ENSMUST00000162345 Stac protein_coding Interval_121655 chr5 4475150 4475897 + 0 NA Intergenic Intergenic 282512 ENSMUSG00000044674.6 ENSMUSG00000044674 ENSMUST00000054294 Fzd1 protein_coding Interval_87937 chr19 57211826 57212083 + 0 NA intron (ENSMUSG00000025085.16, intron 1 of 20) protein_coding-intron (ENSMUSG00000025085.16, intron 1 of 25) -62006 ENSMUSG00000117684.1 ENSMUSG00000117684 ENSMUST00000237596 4930449E18Rik antisense Interval_103626 chr3 51286374 51286831 + 0 NA intron (ENSMUSG00000037174.18, intron 4 of 9) protein_coding-intron (ENSMUSG00000037174.18, intron 4 of 9) -9234 ENSMUSG00000037174.18 ENSMUSG00000037174 ENSMUST00000156983 Elf2 protein_coding Interval_127462 chr5 104106859 104107211 + 0 NA intron (ENSMUSG00000029309.7, intron 1 of 4) protein_coding-intron (ENSMUSG00000029309.7, intron 1 of 10) -2256 ENSMUSG00000097877.2 ENSMUSG00000097877 ENSMUST00000181506 Gm26703 antisense Interval_77576 chr17 92152377 92153174 + 0 NA Intergenic Intergenic -28290 ENSMUSG00000117584.1 ENSMUSG00000117584 ENSMUST00000234894 Gm49994 processed_pseudogene Interval_43637 chr13 34287222 34288325 + 0 NA intron (ENSMUSG00000038267.15, intron 3 of 9) protein_coding-intron (ENSMUSG00000038267.15, intron 3 of 10) -10521 ENSMUSG00000088573.1 ENSMUSG00000088573 ENSMUST00000157948 Gm24530 misc_RNA Interval_9751 chr1 161749316 161749562 + 0 NA Intergenic Intergenic 3383 ENSMUSG00000102399.1 ENSMUSG00000102399 ENSMUST00000195878 Gm5049 processed_pseudogene Interval_55498 chr14 89155517 89156899 + 0 NA Intergenic Intergenic -194817 ENSMUSG00000102164.1 ENSMUSG00000102164 ENSMUST00000192706 Gm36946 TEC Interval_50251 chr14 11307061 11307277 + 0 NA intron (ENSMUSG00000097148.2, intron 3 of 3) protein_coding-intron (ENSMUSG00000097148.2, intron 3 of 3) 24692 ENSMUSG00000099218.1 ENSMUSG00000099218 ENSMUST00000184251 Mir5124b miRNA Interval_57960 chr15 25751387 25751834 + 0 NA intron (ENSMUSG00000022272.17, intron 2 of 5) protein_coding-intron (ENSMUSG00000022272.17, intron 19 of 40) -16946 ENSMUSG00000022272.17 ENSMUSG00000022272 ENSMUST00000145587 Myo10 protein_coding Interval_6387 chr1 106735391 106736064 + 0 NA intron (ENSMUSG00000009905.5, intron 7 of 9) protein_coding-intron (ENSMUSG00000009905.5, intron 7 of 9) -22548 ENSMUSG00000057329.7 ENSMUSG00000057329 ENSMUST00000189999 Bcl2 protein_coding Interval_8599 chr1 143694480 143694980 + 0 NA intron (ENSMUSG00000026361.9, intron 3 of 10) protein_coding-intron (ENSMUSG00000026361.9, intron 3 of 16) 7894 ENSMUSG00000026361.9 ENSMUSG00000026361 ENSMUST00000159794 Cdc73 protein_coding Interval_126433 chr5 88553657 88554957 + 0 NA promoter-TSS (ENSMUSG00000070697.4) protein_coding-promoter-TSS (ENSMUSG00000070697.4) -155 ENSMUSG00000070697.4 ENSMUSG00000070697 ENSMUST00000090413 Utp3 protein_coding Interval_40456 chr12 104998057 105000170 + 0 NA promoter-TSS (ENSMUSG00000054150.12) protein_coding-promoter-TSS (ENSMUSG00000054150.12) -436 ENSMUSG00000054150.12 ENSMUSG00000054150 ENSMUST00000095439 Syne3 protein_coding Interval_32681 chr11 109601160 109601368 + 0 NA intron (ENSMUSG00000041895.15, intron 3 of 7) protein_coding-intron (ENSMUSG00000041895.15, intron 3 of 11) 10703 ENSMUSG00000041895.15 ENSMUSG00000041895 ENSMUST00000153738 Wipi1 protein_coding Interval_93113 chr2 70327244 70327868 + 0 NA intron (ENSMUSG00000042064.13, intron 28 of 33) protein_coding-intron (ENSMUSG00000042064.13, intron 29 of 34) -131426 ENSMUSG00000047965.9 ENSMUSG00000047965 ENSMUST00000140507 Rpl9-ps7 processed_pseudogene Interval_99368 chr2 160348722 160349261 + 0 NA Intergenic Intergenic -14829 ENSMUSG00000074623.4 ENSMUSG00000074623 ENSMUST00000099127 Gm826 protein_coding Interval_167532 chr9 70269900 70270091 + 0 NA intron (ENSMUSG00000032220.10, intron 1 of 17) protein_coding-intron (ENSMUSG00000032220.10, intron 1 of 27) 62645 ENSMUSG00000032220.10 ENSMUSG00000032220 ENSMUST00000034745 Myo1e protein_coding Interval_12256 chr1 191165921 191167393 + 0 NA Intergenic Intergenic -1840 ENSMUSG00000091017.1 ENSMUSG00000091017 ENSMUST00000171798 Fam71a protein_coding Interval_57557 chr15 12329480 12330567 + 0 NA intron (ENSMUSG00000022200.8, intron 1 of 1) protein_coding-intron (ENSMUSG00000022200.8, intron 1 of 3) -8124 ENSMUSG00000097221.1 ENSMUSG00000097221 ENSMUST00000180521 1810049J17Rik protein_coding Interval_121183 chr4 153865584 153865902 + 0 NA Intergenic Intergenic -10641 ENSMUSG00000077519.1 ENSMUSG00000077519 ENSMUST00000104331 Gm25880 snoRNA Interval_141793 chr6 134555772 134557219 + 0 NA intron (ENSMUSG00000030201.15, intron 1 of 22) protein_coding-intron (ENSMUSG00000030201.15, intron 1 of 22) 51186 ENSMUSG00000107728.1 ENSMUSG00000107728 ENSMUST00000204630 Gm38910 lincRNA Interval_43204 chr13 25156958 25157435 + 0 NA intron (ENSMUSG00000035910.15, intron 7 of 9) protein_coding-intron (ENSMUSG00000035910.15, intron 7 of 9) -26132 ENSMUSG00000082667.1 ENSMUSG00000082667 ENSMUST00000118813 Gm11348 processed_pseudogene Interval_146917 chr7 55858978 55859181 + 0 NA intron (ENSMUSG00000030447.15, intron 2 of 31) protein_coding-intron (ENSMUSG00000030447.15, intron 1 of 30) -12780 ENSMUSG00000030447.15 ENSMUSG00000030447 ENSMUST00000205656 Cyfip1 protein_coding Interval_150514 chr7 111712120 111712431 + 0 NA intron (ENSMUSG00000038296.14, intron 1 of 10) protein_coding-intron (ENSMUSG00000038296.14, intron 1 of 10) 67702 ENSMUSG00000038296.14 ENSMUSG00000038296 ENSMUST00000106663 Galnt18 protein_coding Interval_30691 chr11 95929793 95930008 + 0 NA Intergenic Intergenic 8798 ENSMUSG00000088854.1 ENSMUSG00000088854 ENSMUST00000158229 Gm24725 snRNA Interval_58240 chr15 31294442 31294815 + 0 NA exon (ENSMUSG00000022237.17, exon 3 of 3) protein_coding-exon (ENSMUSG00000022237.17, exon 3 of 3) 12539 ENSMUSG00000115418.1 ENSMUSG00000115418 ENSMUST00000228063 Gm49296 TEC Interval_131421 chr5 137081657 137081845 + 0 NA Intergenic Intergenic -9483 ENSMUSG00000037411.10 ENSMUSG00000037411 ENSMUST00000199832 Serpine1 protein_coding Interval_49287 chr13 110287832 110288287 + 0 NA Intergenic Intergenic -7909 ENSMUSG00000021700.10 ENSMUSG00000021700 ENSMUST00000226040 Rab3c protein_coding Interval_3800 chr1 63160095 63160610 + 0 NA intron (ENSMUSG00000025968.16, intron 10 of 11) protein_coding-intron (ENSMUSG00000025968.16, intron 9 of 18) -1503 ENSMUSG00000077884.2 ENSMUSG00000077884 ENSMUST00000104692 Gm24557 miRNA Interval_136092 chr6 50783235 50783744 + 0 NA intron (ENSMUSG00000107667.2, intron 1 of 2) lincRNA-intron (ENSMUSG00000107667.2, intron 1 of 2) 7374 ENSMUSG00000107667.2 ENSMUSG00000107667 ENSMUST00000204275 C530044C16Rik lincRNA Interval_41846 chr13 3455125 3455778 + 0 NA Intergenic Intergenic 2319 ENSMUSG00000113534.1 ENSMUSG00000113534 ENSMUST00000223313 Gm19163 processed_pseudogene Interval_96813 chr2 128472484 128473443 + 0 NA intron (ENSMUSG00000074813.14, intron 2 of 2) lincRNA-intron (ENSMUSG00000074813.14, intron 2 of 2) 39240 ENSMUSG00000114963.1 ENSMUSG00000114963 ENSMUST00000224297 Gm29010 lincRNA Interval_65555 chr16 23274578 23274905 + 0 NA intron (ENSMUSG00000022885.16, intron 1 of 2) protein_coding-intron (ENSMUSG00000022885.16, intron 2 of 7) 48720 ENSMUSG00000022885.16 ENSMUSG00000022885 ENSMUST00000115335 St6gal1 protein_coding Interval_144458 chr7 25278350 25280000 + 0 NA promoter-TSS (ENSMUSG00000005442.13) protein_coding-promoter-TSS (ENSMUSG00000005442.13) -12033 ENSMUSG00000005442.13 ENSMUSG00000005442 ENSMUST00000163901 Cic protein_coding Interval_155701 chr8 36247973 36249829 + 0 NA exon (ENSMUSG00000039633.7, exon 1 of 12) protein_coding-exon (ENSMUSG00000039633.7, exon 1 of 12) 615 ENSMUSG00000039633.7 ENSMUSG00000039633 ENSMUST00000065297 Lonrf1 protein_coding Interval_52366 chr14 45431927 45432208 + 0 NA Intergenic Intergenic 12922 ENSMUSG00000115209.1 ENSMUSG00000115209 ENSMUST00000228291 Gm34250 lincRNA Interval_120575 chr4 149472441 149474001 + 0 NA intron (ENSMUSG00000028992.13, intron 3 of 3) protein_coding-intron (ENSMUSG00000028992.13, intron 3 of 4) -4203 ENSMUSG00000087198.4 ENSMUSG00000087198 ENSMUST00000229840 Tmem274 protein_coding Interval_22491 chr11 11048655 11049303 + 0 NA Intergenic Intergenic -67506 ENSMUSG00000050830.17 ENSMUSG00000050830 ENSMUST00000154155 Vwc2 protein_coding Interval_25348 chr11 46566659 46567547 + 0 NA Intergenic Intergenic -4433 ENSMUSG00000046974.6 ENSMUSG00000046974 ENSMUST00000050937 BC053393 protein_coding Interval_45320 chr13 54342002 54342595 + 0 NA Intergenic Intergenic -14418 ENSMUSG00000113404.1 ENSMUSG00000113404 ENSMUST00000220818 Gm48622 lincRNA Interval_100621 chr2 170520447 170520861 + 0 NA Intergenic Intergenic -8727 ENSMUSG00000085495.1 ENSMUSG00000085495 ENSMUST00000126086 Gm16796 antisense Interval_64846 chr16 16485459 16486371 + 0 NA intron (ENSMUSG00000022788.16, intron 2 of 9) protein_coding-intron (ENSMUSG00000022788.16, intron 3 of 16) -56408 ENSMUSG00000089861.1 ENSMUSG00000089861 ENSMUST00000160015 Gm16139 processed_pseudogene Interval_124993 chr5 63518314 63518850 + 0 NA Intergenic Intergenic 132312 ENSMUSG00000104868.1 ENSMUSG00000104868 ENSMUST00000067917 Gm9954 TEC Interval_74117 chr17 46613717 46613962 + 0 NA intron (ENSMUSG00000023972.10, intron 1 of 19) protein_coding-intron (ENSMUSG00000023972.10, intron 1 of 19) 32183 ENSMUSG00000003546.10 ENSMUSG00000003546 ENSMUST00000003642 Klc4 protein_coding Interval_69552 chr16 94185913 94186665 + 0 NA intron (ENSMUSG00000040820.16, intron 2 of 6) protein_coding-intron (ENSMUSG00000040820.16, intron 5 of 9) 11748 ENSMUSG00000115246.1 ENSMUSG00000115246 ENSMUST00000228762 Gm48984 antisense Interval_56447 chr14 118818964 118820360 + 0 NA intron (ENSMUSG00000022132.15, intron 1 of 3) protein_coding-intron (ENSMUSG00000022132.15, intron 1 of 4) 7369 ENSMUSG00000077661.1 ENSMUSG00000077661 ENSMUST00000104473 n-R5s51 rRNA Interval_121762 chr5 7344025 7345430 + 0 NA promoter-TSS (ENSMUSG00000092094.5) protein_coding-promoter-TSS (ENSMUSG00000092094.5) 29 ENSMUSG00000092094.5 ENSMUSG00000092094 ENSMUST00000164784 Zfp804b protein_coding Interval_95859 chr2 117331576 117331895 + 0 NA intron (ENSMUSG00000027347.18, intron 2 of 16) protein_coding-intron (ENSMUSG00000027347.18, intron 2 of 16) 11142 ENSMUSG00000027347.18 ENSMUSG00000027347 ENSMUST00000110898 Rasgrp1 protein_coding Interval_140009 chr6 113377336 113378558 + 0 NA promoter-TSS (ENSMUSG00000048930.12) protein_coding-promoter-TSS (ENSMUSG00000048930.12) -191 ENSMUSG00000048930.12 ENSMUSG00000048930 ENSMUST00000193384 Tada3 protein_coding Interval_136045 chr6 50295812 50296137 + 0 NA TTS (ENSMUSG00000029822.15) protein_coding-TTS (ENSMUSG00000029822.15) -33999 ENSMUSG00000029821.15 ENSMUSG00000029821 ENSMUST00000204700 Gsdme protein_coding Interval_148459 chr7 81399187 81399357 + 0 NA intron (ENSMUSG00000025586.17, intron 2 of 11) protein_coding-intron (ENSMUSG00000025586.17, intron 2 of 11) -46648 ENSMUSG00000081747.1 ENSMUSG00000081747 ENSMUST00000117118 Rpl7a-ps9 processed_pseudogene Interval_145610 chr7 35961398 35962444 + 0 NA Intergenic Intergenic 123661 ENSMUSG00000100387.1 ENSMUSG00000100387 ENSMUST00000187488 Gm28514 lincRNA Interval_62684 chr15 96253809 96254332 + 0 NA promoter-TSS (ENSMUSG00000097619.8) processed_transcript-promoter-TSS (ENSMUSG00000097619.8) -83 ENSMUSG00000097619.8 ENSMUSG00000097619 ENSMUST00000229950 4833422M21Rik processed_transcript Interval_148072 chr7 79044192 79045059 + 0 NA intron (ENSMUSG00000097441.1, intron 1 of 2) antisense-intron (ENSMUSG00000097441.1, intron 1 of 2) 8698 ENSMUSG00000097441.1 ENSMUSG00000097441 ENSMUST00000180546 Gm26633 antisense Interval_79796 chr18 35148426 35148659 + 0 NA intron (ENSMUSG00000037815.7, intron 2 of 9) protein_coding-intron (ENSMUSG00000037815.7, intron 1 of 17) -60919 ENSMUSG00000117727.1 ENSMUSG00000117727 ENSMUST00000238134 Gm3587 lincRNA Interval_154491 chr8 18647661 18648372 + 0 NA intron (ENSMUSG00000039842.15, intron 9 of 11) protein_coding-intron (ENSMUSG00000039842.15, intron 9 of 13) 8973 ENSMUSG00000090334.1 ENSMUSG00000090334 ENSMUST00000164712 Gm17149 processed_pseudogene Interval_25677 chr11 50717614 50717866 + 0 NA TTS (ENSMUSG00000087080.1) antisense-TTS (ENSMUSG00000087080.1) 1175 ENSMUSG00000087080.1 ENSMUSG00000087080 ENSMUST00000137567 Gm12199 antisense Interval_99637 chr2 163778056 163779500 + 0 NA Intergenic Intergenic -42083 ENSMUSG00000027656.7 ENSMUSG00000027656 ENSMUST00000029188 Ccn5 protein_coding Interval_81293 chr18 57562840 57563615 + 0 NA promoter-TSS (ENSMUSG00000058925.11) protein_coding-promoter-TSS (ENSMUSG00000058925.11) -11348 ENSMUSG00000086607.7 ENSMUSG00000086607 ENSMUST00000151209 4930511M06Rik antisense Interval_49040 chr13 107179286 107179991 + 0 NA Intergenic Intergenic 100553 ENSMUSG00000114475.1 ENSMUSG00000114475 ENSMUST00000223896 Gm2726 processed_pseudogene Interval_96081 chr2 119654347 119655287 + 0 NA TTS (ENSMUSG00000027305.9) protein_coding-TTS (ENSMUSG00000027305.9) 7995 ENSMUSG00000027305.9 ENSMUSG00000027305 ENSMUST00000131596 Ndufaf1 protein_coding Interval_6530 chr1 114714572 114714746 + 0 NA Intergenic Intergenic 505104 ENSMUSG00000101687.1 ENSMUSG00000101687 ENSMUST00000185902 Gm4854 processed_pseudogene Interval_70557 chr17 11992708 11993693 + 0 NA intron (ENSMUSG00000023826.16, intron 8 of 10) protein_coding-intron (ENSMUSG00000023826.16, intron 9 of 11) -126129 ENSMUSG00000023827.8 ENSMUSG00000023827 ENSMUST00000167905 Agpat4 protein_coding Interval_83505 chr18 88460160 88460372 + 0 NA Intergenic Intergenic -45226 ENSMUSG00000117830.1 ENSMUSG00000117830 ENSMUST00000235625 Gm50400 processed_pseudogene Interval_67831 chr16 57548924 57549691 + 0 NA promoter-TSS (ENSMUSG00000043336.14) protein_coding-promoter-TSS (ENSMUSG00000043336.14) 57557 ENSMUSG00000022748.8 ENSMUSG00000022748 ENSMUST00000232413 Cmss1 protein_coding Interval_122187 chr5 19226008 19227865 + 0 NA promoter-TSS (ENSMUSG00000040003.18) protein_coding-promoter-TSS (ENSMUSG00000040003.18) -768 ENSMUSG00000097626.5 ENSMUSG00000097626 ENSMUST00000197496 4921504A21Rik antisense Interval_98888 chr2 155811670 155812683 + 0 NA intron (ENSMUSG00000027612.7, intron 6 of 8) protein_coding-intron (ENSMUSG00000027612.7, intron 6 of 8) 5152 ENSMUSG00000027612.7 ENSMUSG00000027612 ENSMUST00000135945 Mmp24 protein_coding Interval_45719 chr13 57262163 57263357 + 0 NA Intergenic Intergenic -13918 ENSMUSG00000114411.1 ENSMUSG00000114411 ENSMUST00000224461 Gm48176 processed_pseudogene Interval_84142 chr19 7507784 7508802 + 0 NA intron (ENSMUSG00000024759.14, intron 2 of 2) protein_coding-intron (ENSMUSG00000024759.14, intron 1 of 12) 14098 ENSMUSG00000024759.14 ENSMUSG00000024759 ENSMUST00000236382 Atl3 protein_coding Interval_52112 chr14 36612317 36613252 + 0 NA TTS (ENSMUSG00000088766.1) snoRNA-TTS (ENSMUSG00000088766.1) 667 ENSMUSG00000088766.1 ENSMUSG00000088766 ENSMUST00000158141 Gm24394 snoRNA Interval_88787 chr2 10737367 10737561 + 0 NA Intergenic Intergenic -156245 ENSMUSG00000103237.1 ENSMUSG00000103237 ENSMUST00000192439 Gm18547 processed_pseudogene Interval_126127 chr5 77803662 77804501 + 0 NA Intergenic Intergenic 105379 ENSMUSG00000106960.1 ENSMUSG00000106960 ENSMUST00000202676 Gm42673 processed_pseudogene Interval_133046 chr5 149499515 149500334 + 0 NA intron (ENSMUSG00000107132.1, intron 2 of 4) antisense-intron (ENSMUSG00000107132.1, intron 2 of 4) 3128 ENSMUSG00000106879.1 ENSMUSG00000106879 ENSMUST00000201267 Gm2566 processed_pseudogene Interval_164558 chr9 38640622 38641004 + 0 NA Intergenic Intergenic 6709 ENSMUSG00000057444.3 ENSMUSG00000057444 ENSMUST00000215191 Olfr915 polymorphic_pseudogene Interval_26680 chr11 59655277 59656786 + 0 NA Intergenic Intergenic 45446 ENSMUSG00000044061.7 ENSMUSG00000044061 ENSMUST00000055276 Olfr225 polymorphic_pseudogene Interval_114900 chr4 86810366 86811083 + 0 NA intron (ENSMUSG00000038024.17, intron 15 of 30) protein_coding-intron (ENSMUSG00000038024.17, intron 16 of 25) 7853 ENSMUSG00000082969.1 ENSMUSG00000082969 ENSMUST00000121575 Gm12630 processed_pseudogene Interval_168819 chr9 87505189 87505521 + 0 NA Intergenic Intergenic 7243 ENSMUSG00000102683.1 ENSMUSG00000102683 ENSMUST00000193859 Gm37375 TEC Interval_26574 chr11 58990020 58991347 + 0 NA exon (ENSMUSG00000020455.16, exon 6 of 6) protein_coding-exon (ENSMUSG00000020455.16, exon 6 of 6) -12227 ENSMUSG00000072902.4 ENSMUSG00000072902 ENSMUST00000101162 Gm10435 antisense Interval_150290 chr7 109371813 109372625 + 0 NA intron (ENSMUSG00000031027.15, intron 1 of 13) protein_coding-intron (ENSMUSG00000031027.15, intron 1 of 12) 16656 ENSMUSG00000081370.1 ENSMUSG00000081370 ENSMUST00000120160 Gm9105 processed_pseudogene Interval_71506 chr17 24208837 24209766 + 0 NA promoter-TSS (ENSMUSG00000117406.1) protein_coding-promoter-TSS (ENSMUSG00000117406.1) 98 ENSMUSG00000117406.1 ENSMUSG00000117406 ENSMUST00000234909 Ntn3 protein_coding Interval_120509 chr4 149062381 149063338 + 0 NA intron (ENSMUSG00000028975.16, intron 2 of 3) protein_coding-intron (ENSMUSG00000028975.16, intron 2 of 8) -33524 ENSMUSG00000081086.1 ENSMUSG00000081086 ENSMUST00000118516 Gm9506 processed_pseudogene Interval_76833 chr17 84398199 84398522 + 0 NA intron (ENSMUSG00000024251.10, intron 7 of 14) protein_coding-intron (ENSMUSG00000024251.10, intron 22 of 37) 6931 ENSMUSG00000096415.1 ENSMUSG00000096415 ENSMUST00000179017 Gm24722 snRNA Interval_26237 chr11 55351395 55352013 + 0 NA Intergenic Intergenic -39447 ENSMUSG00000055333.14 ENSMUSG00000055333 ENSMUST00000108864 Fat2 protein_coding Interval_141294 chr6 126978125 126978390 + 0 NA Intergenic Intergenic 7068 ENSMUSG00000106898.1 ENSMUSG00000106898 ENSMUST00000201724 Gm43125 processed_pseudogene Interval_107409 chr3 107365234 107366169 + 0 NA Intergenic Intergenic 22746 ENSMUSG00000105532.1 ENSMUSG00000105532 ENSMUST00000199575 Gm5279 processed_pseudogene Interval_22342 chr11 8967555 8968425 + 0 NA intron (ENSMUSG00000046634.12, intron 1 of 49) protein_coding-intron (ENSMUSG00000046634.12, intron 1 of 49) -17451 ENSMUSG00000046634.12 ENSMUSG00000046634 ENSMUST00000155886 Pkd1l1 protein_coding Interval_23677 chr11 24401061 24401576 + 0 NA Intergenic Intergenic -24928 ENSMUSG00000087085.1 ENSMUSG00000087085 ENSMUST00000153153 Gm12068 lincRNA Interval_106688 chr3 98895219 98895705 + 0 NA Intergenic Intergenic -2223 ENSMUSG00000027870.8 ENSMUSG00000027870 ENSMUST00000029464 Hao2 protein_coding Interval_168540 chr9 83382921 83383357 + 0 NA Intergenic Intergenic 18730 ENSMUSG00000032258.15 ENSMUSG00000032258 ENSMUST00000188907 Lca5 protein_coding Interval_12791 chr10 5461011 5461232 + 0 NA intron (ENSMUSG00000096054.3, intron 2 of 145) protein_coding-intron (ENSMUSG00000096054.3, intron 2 of 31) 103948 ENSMUSG00000094906.1 ENSMUSG00000094906 ENSMUST00000104408 Gm23573 snRNA Interval_134725 chr6 30978844 30980867 + 0 NA Intergenic Intergenic -20777 ENSMUSG00000073209.4 ENSMUSG00000073209 ENSMUST00000101589 Klf14 protein_coding Interval_62276 chr15 89398582 89398906 + 0 NA intron (ENSMUSG00000078938.9, intron 1 of 2) protein_coding-intron (ENSMUSG00000078938.9, intron 1 of 2) 11759 ENSMUSG00000078938.9 ENSMUSG00000078938 ENSMUST00000167959 Syce3 protein_coding Interval_138685 chr6 91156455 91157282 + 0 NA promoter-TSS (ENSMUSG00000034245.10) protein_coding-promoter-TSS (ENSMUSG00000034245.10) 2388 ENSMUSG00000085624.1 ENSMUSG00000085624 ENSMUST00000150544 Gm14573 antisense Interval_81240 chr18 56692810 56693234 + 0 NA Intergenic Intergenic 25244 ENSMUSG00000118275.1 ENSMUSG00000118275 ENSMUST00000235398 Gm50289 processed_pseudogene Interval_131155 chr5 135468796 135470752 + 0 NA intron (ENSMUSG00000039959.13, intron 1 of 1) protein_coding-intron (ENSMUSG00000039959.13, intron 1 of 30) 3645 ENSMUSG00000106758.1 ENSMUSG00000106758 ENSMUST00000201839 Gm42731 TEC Interval_69755 chr16 96049694 96050534 + 0 NA intron (ENSMUSG00000022914.17, intron 7 of 13) protein_coding-intron (ENSMUSG00000022914.17, intron 15 of 41) -9146 ENSMUSG00000098733.1 ENSMUSG00000098733 ENSMUST00000184285 Gm27833 miRNA Interval_107865 chr3 116398332 116398667 + 0 NA intron (ENSMUSG00000033502.15, intron 1 of 7) protein_coding-intron (ENSMUSG00000033502.15, intron 3 of 15) 30246 ENSMUSG00000033502.15 ENSMUSG00000033502 ENSMUST00000136994 Cdc14a protein_coding Interval_150837 chr7 115431353 115431573 + 0 NA Intergenic Intergenic 259190 ENSMUSG00000099211.1 ENSMUSG00000099211 ENSMUST00000183778 Gm27684 miRNA Interval_6296 chr1 105626847 105627986 + 0 NA TTS (ENSMUSG00000056536.14) protein_coding-TTS (ENSMUSG00000056536.14) 11674 ENSMUSG00000101656.1 ENSMUSG00000101656 ENSMUST00000187782 Gm8004 processed_pseudogene Interval_70358 chr17 8961820 8962123 + 0 NA exon (ENSMUSG00000023868.17, exon 14 of 22) protein_coding-exon (ENSMUSG00000023868.17, exon 14 of 22) -26371 ENSMUSG00000023873.13 ENSMUSG00000023873 ENSMUST00000136954 1700010I14Rik protein_coding Interval_55117 chr14 78269936 78270271 + 0 NA Intergenic Intergenic -23792 ENSMUSG00000080402.1 ENSMUSG00000080402 ENSMUST00000116752 Gm23652 miRNA Interval_35917 chr12 31916796 31918013 + 0 NA intron (ENSMUSG00000035933.5, intron 2 of 4) protein_coding-intron (ENSMUSG00000035933.5, intron 19 of 22) -8290 ENSMUSG00000035933.5 ENSMUSG00000035933 ENSMUST00000219837 Cog5 protein_coding Interval_58168 chr15 30172155 30173782 + 0 NA promoter-TSS (ENSMUSG00000022240.10) protein_coding-promoter-TSS (ENSMUSG00000022240.10) -120412 ENSMUSG00000065726.1 ENSMUSG00000065726 ENSMUST00000083792 Gm26163 snoRNA Interval_99838 chr2 165233217 165235236 + 0 NA intron (ENSMUSG00000053166.14, intron 1 of 11) protein_coding-intron (ENSMUSG00000053166.14, intron 1 of 11) 35950 ENSMUSG00000087800.1 ENSMUSG00000087800 ENSMUST00000157175 Gm25569 snoRNA Interval_37673 chr12 71009431 71010272 + 0 NA TTS (ENSMUSG00000085622.9) processed_transcript-TTS (ENSMUSG00000085622.9) 5744 ENSMUSG00000085622.9 ENSMUSG00000085622 ENSMUST00000222159 3110056K07Rik processed_transcript Interval_173826 chrX 105736660 105736961 + 0 NA Intergenic Intergenic -11296 ENSMUSG00000063442.5 ENSMUSG00000063442 ENSMUST00000071515 Gm7117 processed_pseudogene Interval_102932 chr3 32912074 32912315 + 0 NA intron (ENSMUSG00000056900.13, intron 14 of 20) protein_coding-intron (ENSMUSG00000056900.13, intron 14 of 20) -31586 ENSMUSG00000081883.2 ENSMUSG00000081883 ENSMUST00000119937 Gm15574 processed_pseudogene Interval_122519 chr5 23545495 23546594 + 0 NA TTS (ENSMUSG00000062604.11) protein_coding-TTS (ENSMUSG00000062604.11) -3926 ENSMUSG00000062604.11 ENSMUSG00000062604 ENSMUST00000196592 Srpk2 protein_coding Interval_30082 chr11 89054407 89054686 + 0 NA intron (ENSMUSG00000000276.11, intron 2 of 10) protein_coding-intron (ENSMUSG00000000276.11, intron 2 of 10) 6202 ENSMUSG00000000276.11 ENSMUSG00000000276 ENSMUST00000152772 Dgke protein_coding Interval_150938 chr7 116503814 116504880 + 0 NA promoter-TSS (ENSMUSG00000030659.14) protein_coding-promoter-TSS (ENSMUSG00000030659.14) -11943 ENSMUSG00000108566.1 ENSMUSG00000108566 ENSMUST00000206800 Gm45031 processed_pseudogene Interval_66636 chr16 35784027 35785194 + 0 NA intron (ENSMUSG00000022849.5, intron 1 of 2) protein_coding-intron (ENSMUSG00000022849.5, intron 1 of 8) 14203 ENSMUSG00000022849.5 ENSMUSG00000022849 ENSMUST00000023555 Hspbap1 protein_coding Interval_149775 chr7 101382304 101382927 + 0 NA promoter-TSS (ENSMUSG00000032812.18) protein_coding-promoter-TSS (ENSMUSG00000032812.18) -2993 ENSMUSG00000032812.18 ENSMUSG00000032812 ENSMUST00000124637 Arap1 protein_coding Interval_146713 chr7 49635014 49636960 + 0 NA intron (ENSMUSG00000030507.6, intron 1 of 3) protein_coding-intron (ENSMUSG00000030507.6, intron 1 of 3) 862 ENSMUSG00000030507.6 ENSMUSG00000030507 ENSMUST00000032717 Dbx1 protein_coding Interval_128331 chr5 112582942 112584028 + 0 NA TTS (ENSMUSG00000098027.1) lincRNA-TTS (ENSMUSG00000098027.1) 840 ENSMUSG00000098027.1 ENSMUSG00000098027 ENSMUST00000183300 Gm27004 lincRNA Interval_159314 chr8 93427102 93427535 + 0 NA promoter-TSS (ENSMUSG00000110670.1) lincRNA-promoter-TSS (ENSMUSG00000110670.1) 25 ENSMUSG00000110670.1 ENSMUSG00000110670 ENSMUST00000212825 Gm30132 lincRNA Interval_117244 chr4 120915297 120916171 + 0 NA Intergenic Intergenic 9271 ENSMUSG00000028629.9 ENSMUSG00000028629 ENSMUST00000156836 Exo5 protein_coding Interval_33522 chr11 117017200 117018853 + 0 NA Intergenic Intergenic 22162 ENSMUSG00000086902.7 ENSMUSG00000086902 ENSMUST00000152401 Gm11728 lincRNA Interval_16863 chr10 69333992 69334315 + 0 NA TTS (ENSMUSG00000019942.13) protein_coding-TTS (ENSMUSG00000019942.13) 16677 ENSMUSG00000019942.13 ENSMUSG00000019942 ENSMUST00000124054 Cdk1 protein_coding Interval_152586 chr7 134850202 134850531 + 0 NA intron (ENSMUSG00000058325.6, intron 24 of 26) protein_coding-intron (ENSMUSG00000058325.6, intron 24 of 51) -50304 ENSMUSG00000110167.1 ENSMUSG00000110167 ENSMUST00000210342 Gm45532 TEC Interval_16695 chr10 67071552 67072315 + 0 NA intron (ENSMUSG00000019873.8, intron 1 of 8) protein_coding-intron (ENSMUSG00000019873.8, intron 1 of 7) -34611 ENSMUSG00000019873.8 ENSMUSG00000019873 ENSMUST00000219431 Reep3 protein_coding Interval_31412 chr11 100545005 100545935 + 0 NA promoter-TSS (ENSMUSG00000006784.14) protein_coding-promoter-TSS (ENSMUSG00000006784.14) -240 ENSMUSG00000006784.14 ENSMUSG00000006784 ENSMUST00000127389 Ttc25 protein_coding Interval_2861 chr1 46894151 46895069 + 0 NA Intergenic Intergenic -1758 ENSMUSG00000025986.6 ENSMUSG00000025986 ENSMUST00000185520 Slc39a10 protein_coding Interval_9989 chr1 164641756 164642471 + 0 NA intron (ENSMUSG00000102897.1, intron 3 of 3) lincRNA-intron (ENSMUSG00000103383.1, intron 4 of 4) 10356 ENSMUSG00000103383.1 ENSMUSG00000103383 ENSMUST00000194406 Gm37754 lincRNA Interval_128180 chr5 111561405 111561869 + 0 NA Intergenic Intergenic -19924 ENSMUSG00000052848.7 ENSMUSG00000052848 ENSMUST00000198458 C130026L21Rik lincRNA Interval_103054 chr3 34751383 34751849 + 0 NA Intergenic Intergenic -20459 ENSMUSG00000106519.1 ENSMUSG00000106519 ENSMUST00000197492 Gm38509 lincRNA Interval_67257 chr16 44887320 44887671 + 0 NA intron (ENSMUSG00000090176.1, intron 2 of 5) protein_coding-intron (ENSMUSG00000090176.1, intron 2 of 5) -4801 ENSMUSG00000116820.1 ENSMUSG00000116820 ENSMUST00000231755 Gm17928 processed_pseudogene Interval_88650 chr2 8721698 8721889 + 0 NA Intergenic Intergenic 87856 ENSMUSG00000084374.1 ENSMUSG00000084374 ENSMUST00000117255 Gm13255 processed_pseudogene Interval_130298 chr5 125497664 125498354 + 0 NA intron (ENSMUSG00000029482.4, intron 5 of 17) protein_coding-intron (ENSMUSG00000029482.4, intron 5 of 17) -17234 ENSMUSG00000029482.4 ENSMUSG00000029482 ENSMUST00000200286 Aacs protein_coding Interval_68560 chr16 78711086 78711382 + 0 NA Intergenic Intergenic 16200 ENSMUSG00000116786.1 ENSMUSG00000116786 ENSMUST00000231496 4930570E03Rik lincRNA Interval_140904 chr6 122686008 122687366 + 0 NA Intergenic Intergenic -9314 ENSMUSG00000072789.4 ENSMUSG00000072789 ENSMUST00000121713 Gm10420 processed_pseudogene Interval_60665 chr15 76017174 76017461 + 0 NA intron (ENSMUSG00000102018.8, intron 3 of 13) protein_coding-intron (ENSMUSG00000102018.8, intron 2 of 4) -3936 ENSMUSG00000046761.13 ENSMUSG00000046761 ENSMUST00000060807 Fam83h protein_coding Interval_31640 chr11 101936532 101938193 + 0 NA Intergenic Intergenic -2139 ENSMUSG00000082171.1 ENSMUSG00000082171 ENSMUST00000120378 Rpl27-ps2 processed_pseudogene Interval_159117 chr8 90811886 90814457 + 0 NA Intergenic Intergenic 4222 ENSMUSG00000110332.1 ENSMUSG00000110332 ENSMUST00000209208 Gm19935 protein_coding Interval_93429 chr2 73003210 73005113 + 0 NA Intergenic Intergenic -17445 ENSMUSG00000079286.1 ENSMUSG00000079286 ENSMUST00000112062 Gm11084 protein_coding Interval_5204 chr1 86441916 86443236 + 0 NA Intergenic Intergenic 16247 ENSMUSG00000036574.5 ENSMUSG00000036574 ENSMUST00000046004 Tex44 protein_coding Interval_79363 chr18 31214293 31214512 + 0 NA intron (ENSMUSG00000057455.12, intron 2 of 4) protein_coding-intron (ENSMUSG00000057455.12, intron 2 of 3) -1670 ENSMUSG00000057455.12 ENSMUSG00000057455 ENSMUST00000139924 Rit2 protein_coding Interval_80908 chr18 50061841 50062781 + 0 NA intron (ENSMUSG00000062210.13, intron 3 of 3) protein_coding-intron (ENSMUSG00000062210.13, intron 1 of 1) -8467 ENSMUSG00000086600.8 ENSMUSG00000086600 ENSMUST00000147073 C030005K06Rik processed_transcript Interval_65258 chr16 20946337 20947080 + 0 NA Intergenic Intergenic 14434 ENSMUSG00000116732.1 ENSMUSG00000116732 ENSMUST00000232658 Gm18769 processed_pseudogene Interval_51897 chr14 33473272 33474408 + 0 NA intron (ENSMUSG00000108841.1, intron 1 of 29) protein_coding-intron (ENSMUSG00000108841.1, intron 1 of 29) 2144 ENSMUSG00000108841.1 ENSMUSG00000108841 ENSMUST00000208380 Frmpd2 protein_coding Interval_73468 chr17 37653613 37654010 + 0 NA Intergenic Intergenic 9964 ENSMUSG00000095286.3 ENSMUSG00000095286 ENSMUST00000073636 Olfr117 protein_coding Interval_93400 chr2 72828961 72829726 + 0 NA Intergenic Intergenic -15626 ENSMUSG00000085427.7 ENSMUSG00000085427 ENSMUST00000125746 6430710C18Rik lincRNA Interval_104410 chr3 65394946 65395447 + 0 NA TTS (ENSMUSG00000048916.7) processed_pseudogene-TTS (ENSMUSG00000048916.7) 1859 ENSMUSG00000048916.7 ENSMUSG00000048916 ENSMUST00000131852 Gm5540 processed_pseudogene Interval_47058 chr13 74921678 74923587 + 0 NA Intergenic Intergenic 58327 ENSMUSG00000086743.2 ENSMUSG00000086743 ENSMUST00000129154 Hnrnpa1l2-ps processed_pseudogene Interval_23929 chr11 28438150 28438758 + 0 NA intron (ENSMUSG00000032878.16, intron 2 of 5) protein_coding-intron (ENSMUSG00000032878.16, intron 2 of 3) -4344 ENSMUSG00000032878.16 ENSMUSG00000032878 ENSMUST00000109501 Ccdc85a protein_coding Interval_126834 chr5 93556730 93557641 + 0 NA Intergenic Intergenic -63484 ENSMUSG00000096044.4 ENSMUSG00000096044 ENSMUST00000200745 Gm16427 protein_coding Interval_165718 chr9 51619898 51620847 + 0 NA Intergenic Intergenic -2373 ENSMUSG00000111162.1 ENSMUSG00000111162 ENSMUST00000216682 Gm7293 processed_pseudogene Interval_2035 chr1 36030026 36031332 + 0 NA exon (ENSMUSG00000102434.1, exon 1 of 1) TEC-exon (ENSMUSG00000102434.1, exon 1 of 1) 339 ENSMUSG00000102434.1 ENSMUSG00000102434 ENSMUST00000195698 Gm38049 TEC Interval_106865 chr3 101398018 101398624 + 0 NA intron (ENSMUSG00000042035.11, intron 1 of 10) protein_coding-intron (ENSMUSG00000042035.11, intron 2 of 10) -9472 ENSMUSG00000104639.1 ENSMUSG00000104639 ENSMUST00000197514 Gm42939 sense_intronic Interval_43322 chr13 29156735 29157618 + 0 NA Intergenic Intergenic -26418 ENSMUSG00000082730.2 ENSMUSG00000082730 ENSMUST00000121672 Gm11363 processed_pseudogene Interval_74779 chr17 56496890 56497298 + 0 NA Intergenic Intergenic 15337 ENSMUSG00000044526.3 ENSMUSG00000044526 ENSMUST00000052211 Znrf4 protein_coding Interval_79986 chr18 36448778 36450740 + 0 NA intron (ENSMUSG00000024346.6, intron 1 of 2) protein_coding-intron (ENSMUSG00000024346.6, intron 2 of 3) 4765 ENSMUSG00000024346.6 ENSMUSG00000024346 ENSMUST00000237499 Pfdn1 protein_coding Interval_11692 chr1 184718042 184718990 + 0 NA exon (ENSMUSG00000092578.1, exon 3 of 3) lincRNA-exon (ENSMUSG00000092578.1, exon 3 of 3) 6019 ENSMUSG00000092578.1 ENSMUSG00000092578 ENSMUST00000172500 4930488B22Rik lincRNA Interval_160811 chr8 112651578 112651835 + 0 NA intron (ENSMUSG00000031772.17, intron 2 of 20) protein_coding-intron (ENSMUSG00000031772.17, intron 2 of 23) 70070 ENSMUSG00000089344.1 ENSMUSG00000089344 ENSMUST00000158719 Gm22664 misc_RNA Interval_174261 chrX 142389874 142391017 + 0 NA promoter-TSS (ENSMUSG00000031278.12) protein_coding-promoter-TSS (ENSMUSG00000031278.12) 15996 ENSMUSG00000082929.1 ENSMUSG00000082929 ENSMUST00000121648 Gm6067 processed_pseudogene Interval_163041 chr9 14739387 14740756 + 0 NA intron (ENSMUSG00000036912.18, intron 1 of 19) protein_coding-intron (ENSMUSG00000036912.18, intron 1 of 18) 3876 ENSMUSG00000082564.1 ENSMUSG00000082564 ENSMUST00000121218 Gm15586 processed_pseudogene Interval_167986 chr9 75280984 75281521 + 0 NA intron (ENSMUSG00000033590.8, intron 25 of 29) protein_coding-intron (ENSMUSG00000033590.8, intron 24 of 40) 33619 ENSMUSG00000111348.1 ENSMUSG00000111348 ENSMUST00000216737 Gm19531 antisense Interval_76307 chr17 78936638 78937727 + 0 NA promoter-TSS (ENSMUSG00000024081.9) protein_coding-promoter-TSS (ENSMUSG00000024081.9) -7845 ENSMUSG00000024082.5 ENSMUSG00000024082 ENSMUST00000232821 Ndufaf7 protein_coding Interval_94421 chr2 91101015 91101869 + 0 NA intron (ENSMUSG00000002111.8, intron 2 of 3) protein_coding-intron (ENSMUSG00000002111.8, intron 2 of 4) -16702 ENSMUSG00000002100.15 ENSMUSG00000002100 ENSMUST00000169776 Mybpc3 protein_coding Interval_9124 chr1 153806769 153808071 + 0 NA intron (ENSMUSG00000042641.19, intron 12 of 21) protein_coding-intron (ENSMUSG00000042641.19, intron 11 of 20) 36722 ENSMUSG00000042641.19 ENSMUSG00000042641 ENSMUST00000206321 Rgsl1 protein_coding Interval_103906 chr3 54786002 54786451 + 0 NA exon (ENSMUSG00000027796.2, exon 3 of 6) protein_coding-exon (ENSMUSG00000027796.2, exon 3 of 6) 19540 ENSMUSG00000036615.7 ENSMUSG00000036615 ENSMUST00000182084 Rfxap protein_coding Interval_169147 chr9 94520590 94521011 + 0 NA intron (ENSMUSG00000045414.7, intron 2 of 2) protein_coding-intron (ENSMUSG00000045414.7, intron 2 of 2) 17281 ENSMUSG00000045414.7 ENSMUSG00000045414 ENSMUST00000113028 Dipk2a protein_coding Interval_12069 chr1 189490745 189491259 + 0 NA Intergenic Intergenic 97652 ENSMUSG00000093791.1 ENSMUSG00000093791 ENSMUST00000180257 Gm24092 miRNA Interval_81213 chr18 56528437 56528732 + 0 NA intron (ENSMUSG00000053644.13, intron 16 of 17) protein_coding-intron (ENSMUSG00000053644.13, intron 16 of 17) -9555 ENSMUSG00000099196.1 ENSMUSG00000099196 ENSMUST00000183892 Mir1258 miRNA Interval_92663 chr2 62174978 62176921 + 0 NA intron (ENSMUSG00000026904.17, intron 2 of 26) protein_coding-intron (ENSMUSG00000026904.17, intron 2 of 24) -141441 ENSMUSG00000026904.17 ENSMUSG00000026904 ENSMUST00000156534 Slc4a10 protein_coding Interval_100522 chr2 169887563 169889069 + 0 NA exon (ENSMUSG00000047907.11, exon 2 of 2) protein_coding-exon (ENSMUSG00000047907.11, exon 2 of 2) 3423 ENSMUSG00000047907.11 ENSMUSG00000047907 ENSMUST00000140699 Tshz2 protein_coding Interval_68260 chr16 71461163 71461530 + 0 NA Intergenic Intergenic -202442 ENSMUSG00000065924.1 ENSMUSG00000065924 ENSMUST00000083990 Gm22797 snoRNA Interval_1784 chr1 33770326 33770564 + 0 NA intron (ENSMUSG00000042197.13, intron 10 of 12) protein_coding-intron (ENSMUSG00000042197.13, intron 12 of 14) -12718 ENSMUSG00000042215.8 ENSMUSG00000042215 ENSMUST00000189741 Bag2 protein_coding Interval_67340 chr16 46557512 46557775 + 0 NA Intergenic Intergenic 19808 ENSMUSG00000116915.1 ENSMUSG00000116915 ENSMUST00000231611 Gm17900 processed_pseudogene Interval_109578 chr3 144589449 144589749 + 0 NA promoter-TSS (ENSMUSG00000037072.15) protein_coding-promoter-TSS (ENSMUSG00000037072.15) -2647 ENSMUSG00000064960.1 ENSMUSG00000064960 ENSMUST00000083026 Gm24406 snoRNA Interval_37936 chr12 73144065 73145689 + 0 NA TTS (ENSMUSG00000077785.1) snoRNA-TTS (ENSMUSG00000077785.1) 1028 ENSMUSG00000077785.1 ENSMUSG00000077785 ENSMUST00000104597 Gm23910 snoRNA Interval_115032 chr4 88745451 88746316 + 0 NA intron (ENSMUSG00000086074.2, intron 2 of 3) antisense-intron (ENSMUSG00000086074.2, intron 2 of 3) -8588 ENSMUSG00000117268.1 ENSMUSG00000117268 ENSMUST00000233825 Gm49884 unprocessed_pseudogene Interval_17605 chr10 78129100 78129300 + 0 NA intron (ENSMUSG00000112662.1, intron 2 of 3) lincRNA-intron (ENSMUSG00000112662.1, intron 2 of 3) 8897 ENSMUSG00000112662.1 ENSMUSG00000112662 ENSMUST00000218616 Gm47922 lincRNA Interval_44871 chr13 49247502 49248999 + 0 NA promoter-TSS (ENSMUSG00000021384.14) protein_coding-promoter-TSS (ENSMUSG00000021384.14) -7632 ENSMUSG00000021384.14 ENSMUSG00000021384 ENSMUST00000131880 Susd3 protein_coding Interval_20122 chr10 115068471 115069325 + 0 NA Intergenic Intergenic 77357 ENSMUSG00000096208.1 ENSMUSG00000096208 ENSMUST00000178475 Gm22070 snRNA Interval_47939 chr13 94515044 94515313 + 0 NA intron (ENSMUSG00000021686.6, intron 6 of 11) protein_coding-intron (ENSMUSG00000021686.6, intron 22 of 26) -1984 ENSMUSG00000084423.1 ENSMUSG00000084423 ENSMUST00000122474 Gm25109 miRNA Interval_122887 chr5 26910229 26911528 + 0 NA intron (ENSMUSG00000061576.15, intron 1 of 25) protein_coding-intron (ENSMUSG00000061576.15, intron 1 of 25) -50777 ENSMUSG00000080941.1 ENSMUSG00000080941 ENSMUST00000119293 Gm16056 processed_pseudogene Interval_70524 chr17 11533799 11534628 + 0 NA intron (ENSMUSG00000023826.16, intron 5 of 10) protein_coding-intron (ENSMUSG00000023826.16, intron 6 of 6) 11585 ENSMUSG00000099618.1 ENSMUSG00000099618 ENSMUST00000185957 Gm28118 processed_pseudogene Interval_126564 chr5 90299767 90300344 + 0 NA exon (ENSMUSG00000055204.15, exon 3 of 34) protein_coding-exon (ENSMUSG00000055204.15, exon 3 of 34) 66130 ENSMUSG00000055204.15 ENSMUSG00000055204 ENSMUST00000202226 Ankrd17 protein_coding Interval_90421 chr2 30349480 30349777 + 0 NA TTS (ENSMUSG00000026860.16) protein_coding-TTS (ENSMUSG00000026860.16) 9661 ENSMUSG00000026860.16 ENSMUSG00000026860 ENSMUST00000139963 Sh3glb2 protein_coding Interval_2811 chr1 45723715 45724027 + 0 NA Intergenic Intergenic -23024 ENSMUSG00000065255.1 ENSMUSG00000065255 ENSMUST00000083321 Gm23974 snoRNA Interval_20458 chr10 117729391 117729781 + 0 NA Intergenic Intergenic 15356 ENSMUSG00000060181.6 ENSMUSG00000060181 ENSMUST00000219482 Slc35e3 protein_coding Interval_158138 chr8 79103879 79105045 + 0 NA intron (ENSMUSG00000071064.15, intron 5 of 13) protein_coding-intron (ENSMUSG00000071064.15, intron 5 of 14) 75875 ENSMUSG00000071064.15 ENSMUSG00000071064 ENSMUST00000129613 Zfp827 protein_coding Interval_161718 chr8 122317943 122318147 + 0 NA intron (ENSMUSG00000049577.15, intron 2 of 2) protein_coding-intron (ENSMUSG00000049577.15, intron 3 of 9) -16586 ENSMUSG00000049577.15 ENSMUSG00000049577 ENSMUST00000212315 Zfpm1 protein_coding Interval_69825 chr16 97165266 97166466 + 0 NA intron (ENSMUSG00000050272.10, intron 1 of 32) protein_coding-intron (ENSMUSG00000050272.10, intron 1 of 32) -239403 ENSMUSG00000116686.1 ENSMUSG00000116686 ENSMUST00000232315 Gm49681 processed_pseudogene Interval_163521 chr9 21839373 21840926 + 0 NA intron (ENSMUSG00000032198.9, intron 9 of 23) protein_coding-intron (ENSMUSG00000032198.9, intron 9 of 48) 4639 ENSMUSG00000047822.8 ENSMUSG00000047822 ENSMUST00000058777 Angptl8 protein_coding Interval_120872 chr4 151194043 151194292 + 0 NA intron (ENSMUSG00000014592.21, intron 6 of 24) protein_coding-intron (ENSMUSG00000014592.21, intron 6 of 23) 104597 ENSMUSG00000078491.2 ENSMUSG00000078491 ENSMUST00000105667 Gm13090 protein_coding Interval_42761 chr13 19158334 19159147 + 0 NA Intergenic Intergenic -19284 ENSMUSG00000076744.2 ENSMUSG00000076744 ENSMUST00000103553 Trgv7 TR_V_gene Interval_161910 chr8 123701863 123702081 + 0 NA intron (ENSMUSG00000092329.1, intron 1 of 15) protein_coding-intron (ENSMUSG00000092329.1, intron 1 of 15) -31986 ENSMUSG00000110599.1 ENSMUSG00000110599 ENSMUST00000212339 6030466F02Rik lincRNA Interval_79976 chr18 36391257 36393014 + 0 NA intron (ENSMUSG00000046727.13, intron 4 of 4) protein_coding-intron (ENSMUSG00000046727.13, intron 2 of 2) 49555 ENSMUSG00000046727.13 ENSMUSG00000046727 ENSMUST00000144158 Cystm1 protein_coding Interval_23057 chr11 19484440 19485143 + 0 NA Intergenic Intergenic 101106 ENSMUSG00000082737.3 ENSMUSG00000082737 ENSMUST00000120961 Gm12026 processed_pseudogene Interval_139983 chr6 113184349 113185234 + 0 NA intron (ENSMUSG00000042873.11, intron 1 of 1) protein_coding-intron (ENSMUSG00000042873.11, intron 2 of 3) 9152 ENSMUSG00000042873.11 ENSMUSG00000042873 ENSMUST00000203665 Lhfpl4 protein_coding Interval_58517 chr15 35410837 35411179 + 0 NA intron (ENSMUSG00000037646.10, intron 4 of 8) protein_coding-intron (ENSMUSG00000037646.10, intron 3 of 61) -37861 ENSMUSG00000115829.1 ENSMUSG00000115829 ENSMUST00000228236 Gm48960 antisense Interval_44964 chr13 51003277 51004341 + 0 NA Intergenic Intergenic -10277 ENSMUSG00000084609.2 ENSMUSG00000084609 ENSMUST00000122660 Gm22199 misc_RNA Interval_115053 chr4 88925289 88926061 + 0 NA intron (ENSMUSG00000117123.1, intron 2 of 2) lincRNA-intron (ENSMUSG00000117123.1, intron 2 of 2) 12846 ENSMUSG00000117123.1 ENSMUSG00000117123 ENSMUST00000233522 Gm49890 lincRNA Interval_18078 chr10 82147228 82148239 + 0 NA intron (ENSMUSG00000078435.5, intron 2 of 3) protein_coding-intron (ENSMUSG00000078435.5, intron 1 of 2) -9368 ENSMUSG00000112922.1 ENSMUSG00000112922 ENSMUST00000219013 Gm47572 TEC Interval_152483 chr7 133377368 133378255 + 0 NA Intergenic Intergenic -44610 ENSMUSG00000109619.1 ENSMUSG00000109619 ENSMUST00000209700 Gm45672 lincRNA Interval_146779 chr7 50831877 50832078 + 0 NA intron (ENSMUSG00000055409.14, intron 16 of 19) protein_coding-intron (ENSMUSG00000055409.14, intron 16 of 19) 111177 ENSMUSG00000109409.1 ENSMUSG00000109409 ENSMUST00000209016 Gm9343 processed_pseudogene Interval_41905 chr13 4183088 4183692 + 0 NA Intergenic Intergenic -10468 ENSMUSG00000021213.12 ENSMUSG00000021213 ENSMUST00000140971 Akr1c13 protein_coding Interval_32171 chr11 105913310 105914157 + 0 NA exon (ENSMUSG00000053580.16, exon 5 of 5) protein_coding-exon (ENSMUSG00000053580.16, exon 5 of 5) -29971 ENSMUSG00000103469.1 ENSMUSG00000103469 ENSMUST00000195385 Gm9910 TEC Interval_46749 chr13 69906638 69907722 + 0 NA Intergenic Intergenic -52653 ENSMUSG00000113802.1 ENSMUSG00000113802 ENSMUST00000220972 4933416O17Rik lincRNA Interval_124220 chr5 41615287 41615486 + 0 NA Intergenic Intergenic 92771 ENSMUSG00000029128.12 ENSMUSG00000029128 ENSMUST00000201473 Rab28 protein_coding Interval_19179 chr10 95316914 95318363 + 0 NA promoter-TSS (ENSMUSG00000112593.1) antisense-promoter-TSS (ENSMUSG00000112593.1) -609 ENSMUSG00000112593.1 ENSMUSG00000112593 ENSMUST00000218132 Gm48882 antisense Interval_97066 chr2 130926277 130926562 + 0 NA intron (ENSMUSG00000027312.14, intron 1 of 2) protein_coding-intron (ENSMUSG00000027312.14, intron 1 of 28) 19488 ENSMUSG00000027312.14 ENSMUSG00000027312 ENSMUST00000151364 Atrn protein_coding Interval_5378 chr1 88149929 88150473 + 0 NA promoter-TSS (ENSMUSG00000082513.1) unprocessed_pseudogene-promoter-TSS (ENSMUSG00000082513.1) -837 ENSMUSG00000082513.1 ENSMUSG00000082513 ENSMUST00000119313 Gm15374 unprocessed_pseudogene Interval_144724 chr7 27798057 27798779 + 0 NA Intergenic Intergenic -8778 ENSMUSG00000030604.9 ENSMUSG00000030604 ENSMUST00000080175 Zfp626 protein_coding Interval_98127 chr2 148535611 148536111 + 0 NA Intergenic Intergenic 66971 ENSMUSG00000087678.1 ENSMUSG00000087678 ENSMUST00000129067 Gm14120 lincRNA Interval_127558 chr5 105262190 105264651 + 0 NA intron (ENSMUSG00000079362.5, intron 10 of 10) protein_coding-intron (ENSMUSG00000079362.5, intron 10 of 10) 30264 ENSMUSG00000104713.4 ENSMUSG00000104713 ENSMUST00000199944 Gbp6 protein_coding Interval_96755 chr2 127773298 127774518 + 0 NA exon (ENSMUSG00000027378.16, exon 5 of 20) protein_coding-exon (ENSMUSG00000027378.16, exon 5 of 20) 18580 ENSMUSG00000051319.6 ENSMUSG00000051319 ENSMUST00000135091 Mtln protein_coding Interval_55222 chr14 79451699 79452914 + 0 NA exon (ENSMUSG00000075502.2, exon 1 of 1) protein_coding-exon (ENSMUSG00000075502.2, exon 1 of 1) 471 ENSMUSG00000075502.2 ENSMUSG00000075502 ENSMUST00000226192 Kbtbd6 protein_coding Interval_53407 chr14 57069615 57070539 + 0 NA Intergenic Intergenic -12354 ENSMUSG00000048582.7 ENSMUSG00000048582 ENSMUST00000223792 Gja3 protein_coding Interval_52170 chr14 37905206 37905517 + 0 NA Intergenic Intergenic 7337 ENSMUSG00000114227.1 ENSMUSG00000114227 ENSMUST00000223652 Gm5204 processed_pseudogene Interval_47672 chr13 91039213 91039967 + 0 NA intron (ENSMUSG00000021619.6, intron 3 of 6) protein_coding-intron (ENSMUSG00000021619.6, intron 4 of 7) 116373 ENSMUSG00000049517.8 ENSMUSG00000049517 ENSMUST00000224430 Rps23 protein_coding Interval_97884 chr2 144765377 144765629 + 0 NA intron (ENSMUSG00000027430.12, intron 4 of 4) protein_coding-intron (ENSMUSG00000027430.12, intron 5 of 5) 9174 ENSMUSG00000084306.1 ENSMUSG00000084306 ENSMUST00000117385 Gm11743 processed_pseudogene Interval_140633 chr6 120222596 120223337 + 0 NA intron (ENSMUSG00000041372.10, intron 7 of 19) protein_coding-intron (ENSMUSG00000041372.10, intron 7 of 19) 71593 ENSMUSG00000041372.10 ENSMUSG00000041372 ENSMUST00000212457 B4galnt3 protein_coding Interval_44310 chr13 43546816 43547271 + 0 NA promoter-TSS (ENSMUSG00000021371.5) protein_coding-promoter-TSS (ENSMUSG00000021371.5) 13148 ENSMUSG00000021371.5 ENSMUSG00000021371 ENSMUST00000223353 Mcur1 protein_coding Interval_118610 chr4 132756648 132757861 + 0 NA promoter-TSS (ENSMUSG00000028885.8) protein_coding-promoter-TSS (ENSMUSG00000028885.8) -2 ENSMUSG00000028885.8 ENSMUSG00000028885 ENSMUST00000030709 Smpdl3b protein_coding Interval_123451 chr5 32638572 32638891 + 0 NA promoter-TSS (ENSMUSG00000014932.15) protein_coding-promoter-TSS (ENSMUSG00000014932.15) 8889 ENSMUSG00000107018.1 ENSMUSG00000107018 ENSMUST00000200773 Gm43694 TEC Interval_21632 chr11 3352950 3353787 + 0 NA promoter-TSS (ENSMUSG00000020451.17) protein_coding-promoter-TSS (ENSMUSG00000020451.17) -551 ENSMUSG00000020451.17 ENSMUSG00000020451 ENSMUST00000145223 Limk2 protein_coding Interval_125649 chr5 73041455 73042137 + 0 NA TTS (ENSMUSG00000107171.1) TEC-TTS (ENSMUSG00000107171.1) 3358 ENSMUSG00000107171.1 ENSMUSG00000107171 ENSMUST00000202292 Gm42572 TEC Interval_52857 chr14 51131175 51132601 + 0 NA TTS (ENSMUSG00000021880.7) protein_coding-TTS (ENSMUSG00000021880.7) 2807 ENSMUSG00000021880.7 ENSMUSG00000021880 ENSMUST00000228752 Rnase6 protein_coding Interval_106824 chr3 101128371 101129902 + 0 NA Intergenic Intergenic -41743 ENSMUSG00000105717.1 ENSMUSG00000105717 ENSMUST00000200367 Gm43465 sense_intronic Interval_48807 chr13 103556707 103557166 + 0 NA Intergenic Intergenic -84990 ENSMUSG00000096642.1 ENSMUSG00000096642 ENSMUST00000179897 Gm24870 snRNA Interval_68669 chr16 84314041 84314404 + 0 NA Intergenic Intergenic 19687 ENSMUSG00000095070.1 ENSMUSG00000095070 ENSMUST00000180104 Gm24508 snRNA Interval_2153 chr1 36745845 36746897 + 0 NA exon (ENSMUSG00000102416.4, exon 3 of 4) protein_coding-exon (ENSMUSG00000102416.4, exon 3 of 4) -1579 ENSMUSG00000104237.1 ENSMUSG00000104237 ENSMUST00000193853 Gm33533 lincRNA Interval_99973 chr2 166188008 166188302 + 0 NA Intergenic Intergenic -1542 ENSMUSG00000088926.1 ENSMUSG00000088926 ENSMUST00000158301 Gm22687 rRNA Interval_37803 chr12 72082464 72082943 + 0 NA intron (ENSMUSG00000019718.8, intron 1 of 2) protein_coding-intron (ENSMUSG00000019718.8, intron 1 of 4) 2315 ENSMUSG00000019718.8 ENSMUSG00000019718 ENSMUST00000138029 L3hypdh protein_coding Interval_113222 chr4 50446999 50447194 + 0 NA Intergenic Intergenic 160350 ENSMUSG00000095394.1 ENSMUSG00000095394 ENSMUST00000104120 Gm25485 snoRNA Interval_61175 chr15 79676266 79676688 + 0 NA intron (ENSMUSG00000022426.6, intron 3 of 3) protein_coding-intron (ENSMUSG00000022426.6, intron 3 of 3) 4845 ENSMUSG00000116239.1 ENSMUSG00000116239 ENSMUST00000230256 Gm49520 processed_pseudogene Interval_20934 chr10 122254414 122254618 + 0 NA Intergenic Intergenic 55366 ENSMUSG00000112305.1 ENSMUSG00000112305 ENSMUST00000220445 Gm48875 processed_pseudogene Interval_172160 chrX 8090346 8090875 + 0 NA promoter-TSS (ENSMUSG00000031165.6) protein_coding-promoter-TSS (ENSMUSG00000031165.6) -1845 ENSMUSG00000031165.6 ENSMUSG00000031165 ENSMUST00000146029 Was protein_coding Interval_132488 chr5 145259353 145260190 + 0 NA Intergenic Intergenic 6606 ENSMUSG00000106188.1 ENSMUSG00000106188 ENSMUST00000198053 Gm9710 processed_pseudogene Interval_158327 chr8 81354575 81354926 + 0 NA intron (ENSMUSG00000037940.17, intron 1 of 24) protein_coding-intron (ENSMUSG00000037940.17, intron 1 of 23) 12188 ENSMUSG00000037940.17 ENSMUSG00000037940 ENSMUST00000165821 Inpp4b protein_coding Interval_54961 chr14 76512961 76513893 + 0 NA Intergenic Intergenic -13165 ENSMUSG00000115092.1 ENSMUSG00000115092 ENSMUST00000227784 E130202H07Rik lincRNA Interval_127272 chr5 102035306 102036301 + 0 NA intron (ENSMUSG00000043940.15, intron 2 of 15) protein_coding-intron (ENSMUSG00000043940.15, intron 2 of 66) 22266 ENSMUSG00000105761.1 ENSMUSG00000105761 ENSMUST00000197792 Gm43787 TEC Interval_68710 chr16 84875293 84875597 + 0 NA Intergenic Intergenic 18387 ENSMUSG00000116668.1 ENSMUSG00000116668 ENSMUST00000231785 Gm49568 processed_pseudogene Interval_167420 chr9 68957066 68957331 + 0 NA intron (ENSMUSG00000032238.17, intron 1 of 5) protein_coding-intron (ENSMUSG00000032238.17, intron 1 of 10) 303307 ENSMUSG00000032238.17 ENSMUSG00000032238 ENSMUST00000113624 Rora protein_coding Interval_114175 chr4 65792433 65792731 + 0 NA intron (ENSMUSG00000028373.16, intron 10 of 21) protein_coding-intron (ENSMUSG00000028373.16, intron 11 of 22) 187333 ENSMUSG00000051675.13 ENSMUSG00000051675 ENSMUST00000156922 Trim32 protein_coding Interval_80649 chr18 45240652 45240858 + 0 NA Intergenic Intergenic 41932 ENSMUSG00000118143.1 ENSMUSG00000118143 ENSMUST00000237199 Gm50124 processed_pseudogene Interval_170978 chr9 113449531 113449996 + 0 NA Intergenic Intergenic 29652 ENSMUSG00000111199.1 ENSMUSG00000111199 ENSMUST00000216389 Gm47875 lincRNA Interval_104679 chr3 69356263 69356659 + 0 NA intron (ENSMUSG00000027784.10, intron 1 of 3) protein_coding-intron (ENSMUSG00000027784.10, intron 1 of 3) -20701 ENSMUSG00000090941.1 ENSMUSG00000090941 ENSMUST00000166666 Gm17212 processed_pseudogene Interval_117983 chr4 127461370 127461555 + 0 NA Intergenic Intergenic -13440 ENSMUSG00000087470.2 ENSMUSG00000087470 ENSMUST00000146587 A630031M04Rik lincRNA Interval_44678 chr13 47093688 47094053 + 0 NA intron (ENSMUSG00000021377.15, intron 1 of 5) protein_coding-intron (ENSMUSG00000021377.15, intron 7 of 10) 4467 ENSMUSG00000021377.15 ENSMUSG00000021377 ENSMUST00000150652 Dek protein_coding Interval_104385 chr3 64964025 64964228 + 0 NA intron (ENSMUSG00000027827.17, intron 1 of 13) protein_coding-intron (ENSMUSG00000027827.17, intron 1 of 1) -13292 ENSMUSG00000027827.17 ENSMUSG00000027827 ENSMUST00000161956 Kcnab1 protein_coding Interval_76840 chr17 84448832 84450427 + 0 NA intron (ENSMUSG00000024251.10, intron 8 of 10) protein_coding-intron (ENSMUSG00000024251.10, intron 8 of 37) 58200 ENSMUSG00000096415.1 ENSMUSG00000096415 ENSMUST00000179017 Gm24722 snRNA Interval_132876 chr5 148453710 148454810 + 0 NA Intergenic Intergenic -2578 ENSMUSG00000106956.1 ENSMUSG00000106956 ENSMUST00000202977 Gm19617 unprocessed_pseudogene Interval_85761 chr19 30539154 30540040 + 0 NA promoter-TSS (ENSMUSG00000058816.5) processed_pseudogene-promoter-TSS (ENSMUSG00000058816.5) -52 ENSMUSG00000058816.5 ENSMUSG00000058816 ENSMUST00000078012 Ppp1r2-ps3 processed_pseudogene Interval_104187 chr3 60034931 60035954 + 0 NA intron (ENSMUSG00000027761.4, intron 1 of 1) protein_coding-intron (ENSMUSG00000027761.4, intron 1 of 4) 9725 ENSMUSG00000027761.4 ENSMUSG00000027761 ENSMUST00000151605 Aadac protein_coding Interval_73174 chr17 35269935 35270273 + 0 NA Intergenic Intergenic 4627 ENSMUSG00000073411.12 ENSMUSG00000073411 ENSMUST00000174325 H2-D1 protein_coding Interval_89495 chr2 21088494 21088696 + 0 NA intron (ENSMUSG00000086821.3, intron 3 of 8) unprocessed_pseudogene-intron (ENSMUSG00000086821.3, intron 3 of 8) -8504 ENSMUSG00000087219.1 ENSMUSG00000087219 ENSMUST00000128743 Gm13376 lincRNA Interval_99867 chr2 165395871 165396353 + 0 NA exon (ENSMUSG00000027670.4, exon 3 of 3) protein_coding-exon (ENSMUSG00000027670.4, exon 3 of 3) 4293 ENSMUSG00000027670.4 ENSMUSG00000027670 ENSMUST00000029213 Ocstamp protein_coding Interval_16422 chr10 62814918 62815635 + 0 NA promoter-TSS (ENSMUSG00000047146.17) protein_coding-promoter-TSS (ENSMUSG00000047146.17) -32089 ENSMUSG00000112806.1 ENSMUSG00000112806 ENSMUST00000218355 Gm48146 TEC Interval_60650 chr15 75923083 75923578 + 0 NA Intergenic Intergenic -1770 ENSMUSG00000022571.9 ENSMUSG00000022571 ENSMUST00000053918 Pycrl protein_coding Interval_103553 chr3 49077008 49077289 + 0 NA intron (ENSMUSG00000102263.1, intron 2 of 2) lincRNA-intron (ENSMUSG00000102263.1, intron 2 of 2) 14770 ENSMUSG00000102263.1 ENSMUSG00000102263 ENSMUST00000194963 Gm31415 lincRNA Interval_133245 chr5 150845767 150846244 + 0 NA intron (ENSMUSG00000106692.1, intron 1 of 3) lincRNA-intron (ENSMUSG00000106692.1, intron 1 of 3) 23146 ENSMUSG00000106692.1 ENSMUSG00000106692 ENSMUST00000201101 Gm36447 lincRNA Interval_173632 chrX 101299019 101299256 + 0 NA promoter-TSS (ENSMUSG00000031302.16) protein_coding-promoter-TSS (ENSMUSG00000031302.16) -57 ENSMUSG00000031302.16 ENSMUSG00000031302 ENSMUST00000144860 Nlgn3 protein_coding Interval_93337 chr2 72074797 72075730 + 0 NA intron (ENSMUSG00000049044.16, intron 1 of 2) protein_coding-intron (ENSMUSG00000049044.16, intron 1 of 27) 73533 ENSMUSG00000085439.1 ENSMUSG00000085439 ENSMUST00000126462 Rapgef4os1 antisense Interval_12926 chr10 8240202 8240774 + 0 NA intron (ENSMUSG00000047712.8, intron 6 of 6) protein_coding-intron (ENSMUSG00000047712.8, intron 7 of 7) 61754 ENSMUSG00000047712.8 ENSMUSG00000047712 ENSMUST00000061601 Ust protein_coding Interval_15513 chr10 50236521 50237232 + 0 NA Intergenic Intergenic -18799 ENSMUSG00000112667.1 ENSMUSG00000112667 ENSMUST00000218660 Gm48270 processed_pseudogene Interval_91555 chr2 43223625 43223858 + 0 NA Intergenic Intergenic 295657 ENSMUSG00000080994.2 ENSMUSG00000080994 ENSMUST00000119418 Gm13464 processed_pseudogene Interval_115964 chr4 106630434 106631098 + 0 NA intron (ENSMUSG00000034919.2, intron 1 of 6) protein_coding-intron (ENSMUSG00000034919.2, intron 1 of 6) -5211 ENSMUSG00000034919.2 ENSMUSG00000034919 ENSMUST00000136505 Ttc22 protein_coding Interval_25527 chr11 49584722 49585096 + 0 NA Intergenic Intergenic 3553 ENSMUSG00000069890.3 ENSMUSG00000069890 ENSMUST00000093146 1700024J04Rik pseudogene Interval_40674 chr12 106903849 106904196 + 0 NA Intergenic Intergenic -17096 ENSMUSG00000083861.1 ENSMUSG00000083861 ENSMUST00000117473 Gm9599 processed_pseudogene Interval_71118 chr17 18764583 18764950 + 0 NA TTS (ENSMUSG00000093602.2) unprocessed_pseudogene-TTS (ENSMUSG00000093602.2) 1506 ENSMUSG00000093602.2 ENSMUSG00000093602 ENSMUST00000175997 Vmn2r-ps116 unprocessed_pseudogene Interval_58556 chr15 36054661 36055116 + 0 NA intron (ENSMUSG00000037627.16, intron 14 of 27) protein_coding-intron (ENSMUSG00000037627.16, intron 3 of 6) -14209 ENSMUSG00000037627.16 ENSMUSG00000037627 ENSMUST00000164955 Rgs22 protein_coding Interval_83187 chr18 82642644 82643461 + 0 NA intron (ENSMUSG00000041258.18, intron 12 of 31) protein_coding-intron (ENSMUSG00000041258.18, intron 10 of 29) -8001 ENSMUSG00000118160.1 ENSMUSG00000118160 ENSMUST00000237388 Gm50347 unprocessed_pseudogene Interval_139722 chr6 108107352 108108541 + 0 NA TTS (ENSMUSG00000030101.15) protein_coding-TTS (ENSMUSG00000030101.15) 32563 ENSMUSG00000091845.1 ENSMUSG00000091845 ENSMUST00000025040 Rpl36-ps12 processed_pseudogene Interval_27958 chr11 71512215 71513408 + 0 NA intron (ENSMUSG00000072753.12, intron 1 of 4) lincRNA-intron (ENSMUSG00000072753.12, intron 1 of 2) 434 ENSMUSG00000072753.12 ENSMUSG00000072753 ENSMUST00000171420 9230020A06Rik lincRNA Interval_83362 chr18 84577186 84577816 + 0 NA intron (ENSMUSG00000048410.17, intron 1 of 8) protein_coding-intron (ENSMUSG00000048410.17, intron 1 of 8) -48244 ENSMUSG00000117676.1 ENSMUSG00000117676 ENSMUST00000236074 Gm50314 antisense Interval_11169 chr1 179823084 179823452 + 0 NA Intergenic Intergenic 19892 ENSMUSG00000073486.2 ENSMUSG00000073486 ENSMUST00000097454 Gm10518 antisense Interval_18762 chr10 90168403 90168692 + 0 NA intron (ENSMUSG00000058589.14, intron 9 of 25) protein_coding-intron (ENSMUSG00000058589.14, intron 9 of 17) -33730 ENSMUSG00000112140.1 ENSMUSG00000112140 ENSMUST00000217774 Gm5780 processed_pseudogene Interval_154317 chr8 14357647 14358211 + 0 NA intron (ENSMUSG00000047495.15, intron 2 of 14) protein_coding-intron (ENSMUSG00000047495.15, intron 2 of 14) 7751 ENSMUSG00000106670.1 ENSMUSG00000106670 ENSMUST00000199602 Gm44347 miRNA Interval_109680 chr3 145961284 145965411 + 0 NA Intergenic Intergenic -24790 ENSMUSG00000036863.12 ENSMUSG00000036863 ENSMUST00000195918 Syde2 protein_coding Interval_71040 chr17 17380615 17381111 + 0 NA exon (ENSMUSG00000116564.1, exon 4 of 10) protein_coding-exon (ENSMUSG00000116564.1, exon 4 of 10) 6291 ENSMUSG00000116564.1 ENSMUSG00000116564 ENSMUST00000232199 Riok2 protein_coding Interval_41182 chr12 111668331 111668869 + 0 NA TTS (ENSMUSG00000001270.9) protein_coding-TTS (ENSMUSG00000001270.9) 2944 ENSMUSG00000001270.9 ENSMUSG00000001270 ENSMUST00000222513 Ckb protein_coding Interval_113409 chr4 54654695 54656211 + 0 NA exon (ENSMUSG00000087077.1, exon 2 of 2) lincRNA-exon (ENSMUSG00000087077.1, exon 2 of 2) 3550 ENSMUSG00000087077.1 ENSMUSG00000087077 ENSMUST00000129576 Gm12480 lincRNA Interval_109592 chr3 144828076 144829913 + 0 NA intron (ENSMUSG00000037033.9, intron 9 of 13) protein_coding-intron (ENSMUSG00000037033.9, intron 9 of 13) -18580 ENSMUSG00000089950.2 ENSMUSG00000089950 ENSMUST00000161990 Gm16215 processed_pseudogene Interval_151825 chr7 126917144 126917407 + 0 NA intron (ENSMUSG00000060538.14, intron 1 of 4) protein_coding-intron (ENSMUSG00000060538.14, intron 1 of 6) -1449 ENSMUSG00000064734.1 ENSMUSG00000064734 ENSMUST00000082800 Gm23445 snRNA Interval_112022 chr4 33292617 33293190 + 0 NA Intergenic Intergenic 17234 ENSMUSG00000086127.1 ENSMUSG00000086127 ENSMUST00000132553 Gm11934 processed_transcript Interval_89174 chr2 17852413 17854236 + 0 NA Intergenic Intergenic -55340 ENSMUSG00000081851.1 ENSMUSG00000081851 ENSMUST00000120245 Gm13323 processed_pseudogene Interval_57342 chr15 9267882 9268545 + 0 NA Intergenic Intergenic -6886 ENSMUSG00000115409.1 ENSMUSG00000115409 ENSMUST00000227680 Gm8139 unprocessed_pseudogene Interval_9477 chr1 157511420 157511892 + 0 NA promoter-TSS (ENSMUSG00000087093.2) antisense-promoter-TSS (ENSMUSG00000087093.2) 65 ENSMUSG00000087093.2 ENSMUSG00000087093 ENSMUST00000135147 Gm15486 antisense Interval_40533 chr12 105553728 105555929 + 0 NA Intergenic Intergenic -6435 ENSMUSG00000113479.1 ENSMUSG00000113479 ENSMUST00000222492 Gm47796 lincRNA Interval_28388 chr11 75555994 75558802 + 0 NA intron (ENSMUSG00000038178.16, intron 5 of 13) protein_coding-intron (ENSMUSG00000038178.16, intron 5 of 13) 5969 ENSMUSG00000093100.1 ENSMUSG00000093100 ENSMUST00000175359 Mir3971 miRNA Interval_150763 chr7 114183326 114184301 + 0 NA Intergenic Intergenic 25275 ENSMUSG00000110407.1 ENSMUSG00000110407 ENSMUST00000211484 Gm45454 processed_pseudogene Interval_148727 chr7 84706708 84707514 + 0 NA intron (ENSMUSG00000085236.3, intron 1 of 4) antisense-intron (ENSMUSG00000085236.3, intron 1 of 4) -17228 ENSMUSG00000030629.15 ENSMUSG00000030629 ENSMUST00000207975 Zfand6 protein_coding Interval_98460 chr2 152560249 152560824 + 0 NA Intergenic Intergenic -2441 ENSMUSG00000090485.2 ENSMUSG00000090485 ENSMUST00000163724 Gm17416 protein_coding Interval_36974 chr12 55820147 55821400 + 0 NA promoter-TSS (ENSMUSG00000021027.17) protein_coding-promoter-TSS (ENSMUSG00000021027.17) -6 ENSMUSG00000021027.17 ENSMUSG00000021027 ENSMUST00000219542 Ralgapa1 protein_coding Interval_164708 chr9 40730441 40732210 + 0 NA intron (ENSMUSG00000032024.10, intron 1 of 1) protein_coding-intron (ENSMUSG00000032024.10, intron 1 of 6) -11339 ENSMUSG00000086014.1 ENSMUSG00000086014 ENSMUST00000128235 Gm16095 antisense Interval_19948 chr10 111458824 111459034 + 0 NA Intergenic Intergenic -14298 ENSMUSG00000058799.16 ENSMUSG00000058799 ENSMUST00000219718 Nap1l1 protein_coding Interval_71667 chr17 25259081 25259943 + 0 NA Intergenic Intergenic -3238 ENSMUSG00000047507.12 ENSMUSG00000047507 ENSMUST00000182978 Baiap3 protein_coding Interval_70169 chr17 5934720 5935483 + 0 NA Intergenic Intergenic -3986 ENSMUSG00000116734.1 ENSMUSG00000116734 ENSMUST00000231634 Gm8376 processed_pseudogene Interval_149337 chr7 97528975 97529166 + 0 NA intron (ENSMUSG00000025133.9, intron 16 of 22) protein_coding-intron (ENSMUSG00000025133.9, intron 16 of 22) -6240 ENSMUSG00000025133.9 ENSMUSG00000025133 ENSMUST00000206843 Ints4 protein_coding Interval_118851 chr4 134061596 134062456 + 0 NA intron (ENSMUSG00000012123.17, intron 1 of 21) protein_coding-intron (ENSMUSG00000012123.17, intron 1 of 2) 1211 ENSMUSG00000012123.17 ENSMUSG00000012123 ENSMUST00000143295 Crybg2 protein_coding Interval_153144 chr7 141632417 141632904 + 0 NA TTS (ENSMUSG00000048191.15) protein_coding-TTS (ENSMUSG00000048191.15) 11959 ENSMUSG00000098759.1 ENSMUSG00000098759 ENSMUST00000184158 Mir7063 miRNA Interval_167538 chr9 70308892 70309193 + 0 NA intron (ENSMUSG00000032220.10, intron 5 of 28) protein_coding-intron (ENSMUSG00000032220.10, intron 4 of 27) 96711 ENSMUSG00000093763.1 ENSMUSG00000093763 ENSMUST00000176002 Mir5626 miRNA Interval_2285 chr1 37675322 37675975 + 0 NA intron (ENSMUSG00000026090.16, intron 1 of 9) protein_coding-intron (ENSMUSG00000026090.16, intron 2 of 3) 14926 ENSMUSG00000104365.1 ENSMUSG00000104365 ENSMUST00000192005 4930470B04Rik TEC Interval_7409 chr1 131115865 131116169 + 0 NA Intergenic Intergenic -13272 ENSMUSG00000089256.1 ENSMUSG00000089256 ENSMUST00000158631 Gm25717 misc_RNA Interval_93687 chr2 75846169 75846450 + 0 NA intron (ENSMUSG00000042410.16, intron 1 of 19) protein_coding-intron (ENSMUSG00000042410.16, intron 1 of 19) -23516 ENSMUSG00000082187.1 ENSMUSG00000082187 ENSMUST00000120947 Gm13670 processed_pseudogene Interval_27559 chr11 68700636 68702638 + 0 NA intron (ENSMUSG00000020900.15, intron 2 of 12) protein_coding-intron (ENSMUSG00000020900.15, intron 2 of 42) 9483 ENSMUSG00000020900.15 ENSMUSG00000020900 ENSMUST00000139059 Myh10 protein_coding Interval_83427 chr18 85274280 85274547 + 0 NA Intergenic Intergenic 202577 ENSMUSG00000118198.1 ENSMUSG00000118198 ENSMUST00000237500 Gm50370 lincRNA Interval_5451 chr1 88949891 88950077 + 0 NA Intergenic Intergenic 17665 ENSMUSG00000101333.1 ENSMUSG00000101333 ENSMUST00000188327 Gm4753 processed_pseudogene Interval_137977 chr6 83890205 83891040 + 0 NA intron (ENSMUSG00000030016.14, intron 1 of 3) protein_coding-intron (ENSMUSG00000030016.14, intron 1 of 3) -6337 ENSMUSG00000107991.1 ENSMUSG00000107991 ENSMUST00000204303 Gm43919 processed_pseudogene Interval_13652 chr10 20431367 20431596 + 0 NA intron (ENSMUSG00000019990.15, intron 9 of 13) protein_coding-intron (ENSMUSG00000019990.15, intron 8 of 12) 15410 ENSMUSG00000019990.15 ENSMUSG00000019990 ENSMUST00000166147 Pde7b protein_coding Interval_97831 chr2 144326273 144326535 + 0 NA intron (ENSMUSG00000037279.13, intron 1 of 1) protein_coding-intron (ENSMUSG00000037279.13, intron 2 of 3) 4922 ENSMUSG00000037279.13 ENSMUSG00000037279 ENSMUST00000138582 Ovol2 protein_coding Interval_101852 chr3 10085934 10087076 + 0 NA Intergenic Intergenic -1605 ENSMUSG00000049230.8 ENSMUSG00000049230 ENSMUST00000061419 Gm9833 protein_coding Interval_55133 chr14 78500725 78501103 + 0 NA intron (ENSMUSG00000022016.17, intron 1 of 2) protein_coding-intron (ENSMUSG00000022016.17, intron 10 of 11) 3057 ENSMUSG00000022016.17 ENSMUSG00000022016 ENSMUST00000226416 Akap11 protein_coding Interval_27682 chr11 69445917 69446876 + 0 NA intron (ENSMUSG00000005237.14, intron 62 of 85) protein_coding-intron (ENSMUSG00000005237.14, intron 61 of 84) -2152 ENSMUSG00000086591.1 ENSMUSG00000086591 ENSMUST00000124108 Dnah2os antisense Interval_41769 chr12 118909834 118910957 + 0 NA intron (ENSMUSG00000072791.11, intron 4 of 9) protein_coding-intron (ENSMUSG00000072791.11, intron 16 of 27) -19636 ENSMUSG00000072791.11 ENSMUSG00000072791 ENSMUST00000100982 Abcb5 protein_coding Interval_124209 chr5 40983140 40983484 + 0 NA Intergenic Intergenic -297924 ENSMUSG00000106865.1 ENSMUSG00000106865 ENSMUST00000200907 4930519E07Rik TEC Interval_18828 chr10 91145584 91145847 + 0 NA Intergenic Intergenic -21693 ENSMUSG00000061904.12 ENSMUSG00000061904 ENSMUST00000172442 Slc25a3 protein_coding Interval_172885 chrX 52782354 52782681 + 0 NA TTS (ENSMUSG00000081843.1) processed_pseudogene-TTS (ENSMUSG00000081843.1) 499 ENSMUSG00000081843.1 ENSMUSG00000081843 ENSMUST00000117574 Gm7851 processed_pseudogene Interval_121133 chr4 153340743 153341483 + 0 NA Intergenic Intergenic 122937 ENSMUSG00000087454.1 ENSMUSG00000087454 ENSMUST00000126141 Gm13174 lincRNA Interval_151905 chr7 127454404 127455405 + 0 NA promoter-TSS (ENSMUSG00000108465.1) TEC-promoter-TSS (ENSMUSG00000108465.1) -565 ENSMUSG00000108465.1 ENSMUSG00000108465 ENSMUST00000205704 Gm45110 TEC Interval_140458 chr6 118373042 118373682 + 0 NA Intergenic Intergenic 46042 ENSMUSG00000030138.8 ENSMUSG00000030138 ENSMUST00000203444 Bms1 protein_coding Interval_154166 chr8 13181417 13182537 + 0 NA intron (ENSMUSG00000038515.10, intron 5 of 6) protein_coding-intron (ENSMUSG00000038515.10, intron 6 of 8) 7121 ENSMUSG00000088054.1 ENSMUSG00000088054 ENSMUST00000157429 Mir1968 miRNA Interval_148656 chr7 83882246 83885437 + 0 NA promoter-TSS (ENSMUSG00000038503.15) protein_coding-promoter-TSS (ENSMUSG00000038503.15) 464 ENSMUSG00000070462.4 ENSMUSG00000070462 ENSMUST00000094216 Tlnrd1 protein_coding Interval_58293 chr15 31856053 31856284 + 0 NA Intergenic Intergenic -122530 ENSMUSG00000115589.1 ENSMUSG00000115589 ENSMUST00000228855 Gm18003 processed_pseudogene Interval_109244 chr3 138215382 138216949 + 0 NA intron (ENSMUSG00000099146.7, intron 2 of 2) antisense-intron (ENSMUSG00000099146.7, intron 2 of 2) -5306 ENSMUSG00000055301.8 ENSMUSG00000055301 ENSMUST00000196133 Adh7 protein_coding Interval_133969 chr6 17004260 17004574 + 0 NA Intergenic Intergenic 60579 ENSMUSG00000084772.1 ENSMUSG00000084772 ENSMUST00000140746 Gm15473 lincRNA Interval_42511 chr13 14295993 14296405 + 0 NA intron (ENSMUSG00000021301.9, intron 7 of 17) protein_coding-intron (ENSMUSG00000021301.9, intron 15 of 28) -74261 ENSMUSG00000113563.1 ENSMUSG00000113563 ENSMUST00000221355 Gm2492 processed_pseudogene Interval_10700 chr1 173339510 173340190 + 0 NA intron (ENSMUSG00000005338.13, intron 2 of 3) protein_coding-intron (ENSMUSG00000005338.13, intron 8 of 9) -6100 ENSMUSG00000037872.5 ENSMUSG00000037872 ENSMUST00000194046 Ackr1 protein_coding Interval_52202 chr14 40390231 40391304 + 0 NA Intergenic Intergenic -30748 ENSMUSG00000095140.1 ENSMUSG00000095140 ENSMUST00000177872 Gm24388 snRNA Interval_169005 chr9 90155024 90155312 + 0 NA Intergenic Intergenic 4636 ENSMUSG00000104263.1 ENSMUSG00000104263 ENSMUST00000192703 9430062P05Rik TEC Interval_74140 chr17 46742585 46744276 + 0 NA intron (ENSMUSG00000023973.13, intron 2 of 5) protein_coding-intron (ENSMUSG00000023973.13, intron 2 of 5) 8747 ENSMUSG00000023973.13 ENSMUSG00000023973 ENSMUST00000148656 Cnpy3 protein_coding Interval_30839 chr11 96805669 96806808 + 0 NA intron (ENSMUSG00000018666.13, intron 4 of 4) protein_coding-intron (ENSMUSG00000018666.13, intron 4 of 4) -10413 ENSMUSG00000081249.3 ENSMUSG00000081249 ENSMUST00000119491 Gm11517 processed_pseudogene Interval_69885 chr16 97888837 97890032 + 0 NA intron (ENSMUSG00000045975.8, intron 4 of 6) protein_coding-intron (ENSMUSG00000045975.8, intron 4 of 13) -12143 ENSMUSG00000105138.1 ENSMUSG00000105138 ENSMUST00000200252 Mir6964 miRNA Interval_103538 chr3 47836478 47837476 + 0 NA Intergenic Intergenic 189783 ENSMUSG00000103257.1 ENSMUSG00000103257 ENSMUST00000193787 Gm7977 processed_pseudogene Interval_160618 chr8 111079565 111080302 + 0 NA intron (ENSMUSG00000033633.15, intron 3 of 18) protein_coding-intron (ENSMUSG00000033633.15, intron 3 of 12) 2155 ENSMUSG00000033633.15 ENSMUSG00000033633 ENSMUST00000190222 Clec18a protein_coding Interval_118592 chr4 132663477 132663761 + 0 NA intron (ENSMUSG00000028886.15, intron 3 of 6) protein_coding-intron (ENSMUSG00000028886.15, intron 2 of 14) 24573 ENSMUSG00000028886.15 ENSMUSG00000028886 ENSMUST00000130833 Eya3 protein_coding Interval_94909 chr2 101628616 101629336 + 0 NA promoter-TSS (ENSMUSG00000027165.16) protein_coding-promoter-TSS (ENSMUSG00000027165.16) 4230 ENSMUSG00000032864.4 ENSMUSG00000032864 ENSMUST00000111227 Rag2 protein_coding Interval_93992 chr2 80548877 80549195 + 0 NA TTS (ENSMUSG00000081487.1) processed_pseudogene-TTS (ENSMUSG00000081487.1) 1360 ENSMUSG00000081487.1 ENSMUSG00000081487 ENSMUST00000119360 Gm13689 processed_pseudogene Interval_34653 chr12 8379769 8380142 + 0 NA Intergenic Intergenic -14254 ENSMUSG00000112452.1 ENSMUSG00000112452 ENSMUST00000218567 Gm48075 lincRNA Interval_15167 chr10 43028440 43029193 + 0 NA intron (ENSMUSG00000038248.8, intron 5 of 6) protein_coding-intron (ENSMUSG00000038248.8, intron 5 of 6) -6177 ENSMUSG00000111171.1 ENSMUSG00000111171 ENSMUST00000213469 Gm47815 antisense Interval_82259 chr18 69721711 69723567 + 0 NA Intergenic Intergenic 55406 ENSMUSG00000064706.1 ENSMUSG00000064706 ENSMUST00000082772 Gm22508 misc_RNA Interval_62711 chr15 96408227 96409230 + 0 NA Intergenic Intergenic 3870 ENSMUSG00000093529.1 ENSMUSG00000093529 ENSMUST00000176951 Gm25397 miRNA Interval_13784 chr10 22080198 22080599 + 0 NA intron (ENSMUSG00000097739.1, intron 3 of 3) transcribed_unprocessed_pseudogene-intron (ENSMUSG00000097739.1, intron 3 of 3) -12319 ENSMUSG00000069712.5 ENSMUSG00000069712 ENSMUST00000092672 4930444G20Rik protein_coding Interval_5016 chr1 84235604 84235797 + 0 NA intron (ENSMUSG00000045658.16, intron 2 of 4) protein_coding-intron (ENSMUSG00000045658.16, intron 1 of 2) -16739 ENSMUSG00000098851.1 ENSMUSG00000098851 ENSMUST00000183596 Mir6353 miRNA Interval_104510 chr3 67068317 67068584 + 0 NA intron (ENSMUSG00000034544.17, intron 3 of 7) protein_coding-intron (ENSMUSG00000034544.17, intron 2 of 8) 12492 ENSMUSG00000065245.1 ENSMUSG00000065245 ENSMUST00000083311 Gm22295 snRNA Interval_94984 chr2 102529373 102529571 + 0 NA Intergenic Intergenic -20677 ENSMUSG00000027188.8 ENSMUSG00000027188 ENSMUST00000143071 Pamr1 protein_coding Interval_82569 chr18 75215438 75216157 + 0 NA intron (ENSMUSG00000035765.10, intron 14 of 16) protein_coding-intron (ENSMUSG00000035765.10, intron 14 of 16) -32983 ENSMUSG00000094153.2 ENSMUSG00000094153 ENSMUST00000179328 Gm8807 processed_pseudogene Interval_142862 chr6 146535869 146536345 + 0 NA Intergenic Intergenic 41673 ENSMUSG00000040250.14 ENSMUSG00000040250 ENSMUST00000205078 Ints13 protein_coding Interval_164014 chr9 30902298 30902597 + 0 NA exon (ENSMUSG00000033453.8, exon 8 of 8) protein_coding-exon (ENSMUSG00000033453.8, exon 8 of 8) 7210 ENSMUSG00000033453.8 ENSMUSG00000033453 ENSMUST00000216215 Adamts15 protein_coding Interval_128614 chr5 114312078 114313179 + 0 NA intron (ENSMUSG00000066952.11, intron 1 of 31) protein_coding-intron (ENSMUSG00000066952.11, intron 1 of 31) -2313 ENSMUSG00000066952.11 ENSMUSG00000066952 ENSMUST00000125230 Myo1h protein_coding Interval_50181 chr14 8741846 8742139 + 0 NA Intergenic Intergenic 54573 ENSMUSG00000114764.1 ENSMUSG00000114764 ENSMUST00000225348 Gm20241 processed_pseudogene Interval_106785 chr3 100797190 100799084 + 0 NA Intergenic Intergenic -27322 ENSMUSG00000051076.8 ENSMUSG00000051076 ENSMUST00000054791 Vtcn1 protein_coding Interval_110345 chr3 157231297 157231484 + 0 NA intron (ENSMUSG00000040037.13, intron 6 of 6) protein_coding-intron (ENSMUSG00000040037.13, intron 6 of 6) 5941 ENSMUSG00000094982.1 ENSMUSG00000094982 ENSMUST00000177876 Gm23725 snRNA Interval_127598 chr5 105691602 105691870 + 0 NA Intergenic Intergenic -39653 ENSMUSG00000046079.16 ENSMUSG00000046079 ENSMUST00000134605 Lrrc8d protein_coding Interval_118019 chr4 128176670 128177082 + 0 NA intron (ENSMUSG00000028804.20, intron 3 of 70) protein_coding-intron (ENSMUSG00000028804.20, intron 3 of 12) -9909 ENSMUSG00000087459.8 ENSMUSG00000087459 ENSMUST00000179945 Csmd2os antisense Interval_57358 chr15 9557745 9558820 + 0 NA Intergenic Intergenic -28454 ENSMUSG00000003882.5 ENSMUSG00000003882 ENSMUST00000228673 Il7r protein_coding Interval_125792 chr5 74176190 74177185 + 0 NA promoter-TSS (ENSMUSG00000106735.1) TEC-promoter-TSS (ENSMUSG00000106735.1) -637 ENSMUSG00000106735.1 ENSMUSG00000106735 ENSMUST00000200757 A330058E17Rik TEC Interval_60302 chr15 72654684 72654892 + 0 NA intron (ENSMUSG00000047921.17, intron 20 of 21) protein_coding-intron (ENSMUSG00000047921.17, intron 20 of 21) 66505 ENSMUSG00000116088.1 ENSMUSG00000116088 ENSMUST00000230426 Gm49460 antisense Interval_71848 chr17 26490153 26490721 + 0 NA intron (ENSMUSG00000118107.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000118107.1, intron 1 of 2) 472 ENSMUSG00000118107.1 ENSMUSG00000118107 ENSMUST00000236309 Gm34455 lincRNA Interval_79915 chr18 35887540 35889987 + 0 NA TTS (ENSMUSG00000118358.1) lincRNA-TTS (ENSMUSG00000118358.1) 1574 ENSMUSG00000118358.1 ENSMUSG00000118358 ENSMUST00000237036 Gm36315 lincRNA Interval_70439 chr17 10248383 10248750 + 0 NA intron (ENSMUSG00000062078.15, intron 1 of 4) protein_coding-intron (ENSMUSG00000062078.15, intron 3 of 6) 70795 ENSMUSG00000062078.15 ENSMUSG00000062078 ENSMUST00000233684 Qk protein_coding Interval_88982 chr2 13977454 13977937 + 0 NA intron (ENSMUSG00000063275.15, intron 6 of 7) protein_coding-intron (ENSMUSG00000063275.15, intron 6 of 7) 42354 ENSMUSG00000102553.1 ENSMUSG00000102553 ENSMUST00000191894 D930036K23Rik TEC Interval_171831 chr9 121551099 121551628 + 0 NA Intergenic Intergenic -15212 ENSMUSG00000111598.1 ENSMUSG00000111598 ENSMUST00000215630 Gm47095 lincRNA Interval_65406 chr16 22178961 22179207 + 0 NA Intergenic Intergenic -45160 ENSMUSG00000064686.1 ENSMUSG00000064686 ENSMUST00000082752 Gm25810 snRNA Interval_129716 chr5 121936599 121937296 + 0 NA intron (ENSMUSG00000042589.18, intron 1 of 6) protein_coding-intron (ENSMUSG00000042589.18, intron 2 of 22) -70884 ENSMUSG00000042589.18 ENSMUSG00000042589 ENSMUST00000125267 Cux2 protein_coding Interval_161671 chr8 121927286 121928047 + 0 NA promoter-TSS (ENSMUSG00000025317.7) protein_coding-promoter-TSS (ENSMUSG00000025317.7) -192 ENSMUSG00000025317.7 ENSMUSG00000025317 ENSMUST00000151462 Car5a protein_coding Interval_159850 chr8 104359758 104360415 + 0 NA intron (ENSMUSG00000096188.1, intron 1 of 3) protein_coding-intron (ENSMUSG00000096188.1, intron 1 of 3) 3582 ENSMUSG00000110486.1 ENSMUSG00000110486 ENSMUST00000212110 Gm45877 sense_intronic Interval_121620 chr5 3962196 3962947 + 0 NA intron (ENSMUSG00000040407.18, intron 7 of 47) protein_coding-intron (ENSMUSG00000040407.18, intron 7 of 47) -26435 ENSMUSG00000105893.1 ENSMUSG00000105893 ENSMUST00000200591 Wdr46-ps processed_pseudogene Interval_4180 chr1 71392583 71392937 + 0 NA intron (ENSMUSG00000050296.14, intron 2 of 2) protein_coding-intron (ENSMUSG00000050296.14, intron 2 of 52) -56974 ENSMUSG00000050296.14 ENSMUSG00000050296 ENSMUST00000189102 Abca12 protein_coding Interval_110735 chr4 7720056 7720301 + 0 NA Intergenic Intergenic -39492 ENSMUSG00000085630.1 ENSMUSG00000085630 ENSMUST00000127180 Gm11795 lincRNA Interval_158591 chr8 84659989 84663043 + 0 NA exon (ENSMUSG00000053560.5, exon 1 of 1) protein_coding-exon (ENSMUSG00000053560.5, exon 1 of 1) 1338 ENSMUSG00000053560.5 ENSMUSG00000053560 ENSMUST00000060427 Ier2 protein_coding Interval_65330 chr16 21615913 21616277 + 0 NA intron (ENSMUSG00000033653.18, intron 2 of 3) protein_coding-intron (ENSMUSG00000033653.18, intron 44 of 45) 78485 ENSMUSG00000043391.10 ENSMUSG00000043391 ENSMUST00000232634 2510009E07Rik protein_coding Interval_128084 chr5 110786235 110786910 + 0 NA intron (ENSMUSG00000029512.11, intron 26 of 27) protein_coding-intron (ENSMUSG00000029512.11, intron 26 of 27) -5957 ENSMUSG00000029507.16 ENSMUSG00000029507 ENSMUST00000149208 Pus1 protein_coding Interval_67480 chr16 49579773 49580393 + 0 NA Intergenic Intergenic -119221 ENSMUSG00000032965.11 ENSMUSG00000032965 ENSMUST00000140914 Ift57 protein_coding Interval_12349 chr1 192351389 192352283 + 0 NA intron (ENSMUSG00000058248.12, intron 7 of 10) protein_coding-intron (ENSMUSG00000058248.12, intron 7 of 10) -82904 ENSMUSG00000058248.12 ENSMUSG00000058248 ENSMUST00000151152 Kcnh1 protein_coding Interval_76702 chr17 83588197 83589078 + 0 NA intron (ENSMUSG00000045053.2, intron 1 of 1) protein_coding-intron (ENSMUSG00000045053.2, intron 1 of 1) 43258 ENSMUSG00000045053.2 ENSMUSG00000045053 ENSMUST00000051482 Kcng3 protein_coding Interval_146656 chr7 49224191 49225383 + 0 NA intron (ENSMUSG00000052512.17, intron 2 of 39) protein_coding-intron (ENSMUSG00000052512.17, intron 2 of 39) 29246 ENSMUSG00000103834.1 ENSMUSG00000103834 ENSMUST00000195677 Gm37613 TEC Interval_66193 chr16 32253936 32255315 + 0 NA intron (ENSMUSG00000022787.10, intron 2 of 2) protein_coding-intron (ENSMUSG00000022787.10, intron 2 of 2) 7398 ENSMUSG00000022787.10 ENSMUSG00000022787 ENSMUST00000135289 Wdr53 protein_coding Interval_160595 chr8 110928108 110928326 + 0 NA intron (ENSMUSG00000031749.12, intron 2 of 2) protein_coding-intron (ENSMUSG00000031749.12, intron 1 of 6) -3704 ENSMUSG00000031749.12 ENSMUSG00000031749 ENSMUST00000138332 St3gal2 protein_coding Interval_156624 chr8 55398111 55398395 + 0 NA Intergenic Intergenic -134038 ENSMUSG00000110025.1 ENSMUSG00000110025 ENSMUST00000210122 Gm20586 processed_pseudogene Interval_25062 chr11 43584825 43586741 + 0 NA exon (ENSMUSG00000044707.7, exon 6 of 6) protein_coding-exon (ENSMUSG00000044707.7, exon 6 of 6) -1257 ENSMUSG00000045877.2 ENSMUSG00000045877 ENSMUST00000056256 4933415A04Rik lincRNA Interval_4591 chr1 75305991 75306935 + 0 NA Intergenic Intergenic 10984 ENSMUSG00000026209.15 ENSMUSG00000026209 ENSMUST00000189282 Dnpep protein_coding Interval_171139 chr9 114728473 114728682 + 0 NA Intergenic Intergenic -2539 ENSMUSG00000032434.9 ENSMUSG00000032434 ENSMUST00000035007 Cmtm6 protein_coding Interval_115270 chr4 95094464 95094959 + 0 NA intron (ENSMUSG00000087366.7, intron 2 of 3) antisense-intron (ENSMUSG00000087366.7, intron 2 of 4) -3292 ENSMUSG00000085377.1 ENSMUSG00000085377 ENSMUST00000156086 4930551L18Rik lincRNA Interval_105906 chr3 90007958 90008610 + 0 NA exon (ENSMUSG00000042520.16, exon 25 of 29) protein_coding-exon (ENSMUSG00000042520.16, exon 25 of 29) 2446 ENSMUSG00000077569.1 ENSMUSG00000077569 ENSMUST00000104381 Gm24608 snoRNA Interval_154306 chr8 14224896 14225150 + 0 NA intron (ENSMUSG00000047495.15, intron 1 of 13) protein_coding-intron (ENSMUSG00000047495.15, intron 1 of 14) 48288 ENSMUSG00000088311.1 ENSMUSG00000088311 ENSMUST00000157686 Gm26184 snoRNA Interval_150308 chr7 109518025 109519925 + 0 NA promoter-TSS (ENSMUSG00000046364.14) protein_coding-promoter-TSS (ENSMUSG00000046364.14) -295 ENSMUSG00000046364.14 ENSMUSG00000046364 ENSMUST00000174303 Rpl27a protein_coding Interval_164595 chr9 39701302 39702528 + 0 NA exon (ENSMUSG00000062121.3, exon 1 of 1) protein_coding-exon (ENSMUSG00000062121.3, exon 1 of 1) 5202 ENSMUSG00000062121.3 ENSMUSG00000062121 ENSMUST00000082027 Olfr149 protein_coding Interval_163770 chr9 25510414 25510961 + 0 NA intron (ENSMUSG00000036611.5, intron 2 of 7) protein_coding-intron (ENSMUSG00000036611.5, intron 2 of 7) 27820 ENSMUSG00000036611.5 ENSMUSG00000036611 ENSMUST00000156237 Eepd1 protein_coding Interval_159809 chr8 103914390 103914704 + 0 NA Intergenic Intergenic -156602 ENSMUSG00000110019.1 ENSMUSG00000110019 ENSMUST00000211125 Gm8748 processed_pseudogene Interval_170105 chr9 104535225 104535957 + 0 NA Intergenic Intergenic -54081 ENSMUSG00000089116.1 ENSMUSG00000089116 ENSMUST00000158491 Gm25904 snoRNA Interval_7482 chr1 131740272 131740486 + 0 NA Intergenic Intergenic -3659 ENSMUSG00000042268.10 ENSMUSG00000042268 ENSMUST00000147800 Slc26a9 protein_coding Interval_112186 chr4 35308754 35309920 + 0 NA Intergenic Intergenic -83162 ENSMUSG00000028300.14 ENSMUSG00000028300 ENSMUST00000149138 C9orf72 protein_coding Interval_154650 chr8 22350336 22351454 + 0 NA intron (ENSMUSG00000031481.8, intron 22 of 28) protein_coding-intron (ENSMUSG00000031481.8, intron 22 of 27) 47649 ENSMUSG00000031482.9 ENSMUSG00000031482 ENSMUST00000210020 Slc25a15 protein_coding Interval_144422 chr7 25058454 25059180 + 0 NA intron (ENSMUSG00000003378.9, intron 10 of 20) protein_coding-intron (ENSMUSG00000003378.9, intron 9 of 19) 13529 ENSMUSG00000003378.9 ENSMUSG00000003378 ENSMUST00000205993 Grik5 protein_coding Interval_153759 chr8 7272785 7274174 + 0 NA Intergenic Intergenic 42245 ENSMUSG00000108914.1 ENSMUSG00000108914 ENSMUST00000208610 Gm44908 processed_pseudogene Interval_66216 chr16 32364189 32364730 + 0 NA intron (ENSMUSG00000053774.9, intron 3 of 9) protein_coding-intron (ENSMUSG00000053774.9, intron 3 of 10) 32194 ENSMUSG00000053774.9 ENSMUSG00000053774 ENSMUST00000232137 Ubxn7 protein_coding Interval_114820 chr4 85824050 85824464 + 0 NA intron (ENSMUSG00000066113.16, intron 2 of 3) protein_coding-intron (ENSMUSG00000066113.16, intron 2 of 3) -85654 ENSMUSG00000088122.2 ENSMUSG00000088122 ENSMUST00000157497 Gm26069 misc_RNA Interval_11627 chr1 183438889 183439799 + 0 NA Intergenic Intergenic 18689 ENSMUSG00000104022.1 ENSMUSG00000104022 ENSMUST00000192860 Gm37214 sense_intronic Interval_36667 chr12 51870785 51871350 + 0 NA Intergenic Intergenic -30446 ENSMUSG00000112746.1 ENSMUSG00000112746 ENSMUST00000218295 Gm19309 processed_pseudogene Interval_90840 chr2 32913973 32914282 + 0 NA promoter-TSS (ENSMUSG00000026796.16) protein_coding-promoter-TSS (ENSMUSG00000026796.16) -584 ENSMUSG00000026796.16 ENSMUSG00000026796 ENSMUST00000151607 Fam129b protein_coding Interval_23237 chr11 20771654 20773441 + 0 NA Intergenic Intergenic -31092 ENSMUSG00000049659.15 ENSMUSG00000049659 ENSMUST00000134897 Aftph protein_coding Interval_170134 chr9 105394852 105395807 + 0 NA promoter-TSS (ENSMUSG00000032567.16) protein_coding-promoter-TSS (ENSMUSG00000032567.16) -8067 ENSMUSG00000032567.16 ENSMUSG00000032567 ENSMUST00000190934 Aste1 protein_coding Interval_23209 chr11 20573479 20574216 + 0 NA TTS (ENSMUSG00000083555.1) processed_pseudogene-TTS (ENSMUSG00000083555.1) 1342 ENSMUSG00000083555.1 ENSMUSG00000083555 ENSMUST00000121890 Gm12035 processed_pseudogene Interval_47195 chr13 77708137 77709215 + 0 NA promoter-TSS (ENSMUSG00000064138.14) protein_coding-promoter-TSS (ENSMUSG00000064138.14) 6643 ENSMUSG00000064138.14 ENSMUSG00000064138 ENSMUST00000224013 Fam172a protein_coding Interval_95310 chr2 106193928 106195042 + 0 NA intron (ENSMUSG00000074981.13, intron 9 of 35) transcribed_unitary_pseudogene-intron (ENSMUSG00000074981.13, intron 9 of 35) -27572 ENSMUSG00000074981.13 ENSMUSG00000074981 ENSMUST00000037284 Dcdc5 transcribed_unitary_pseudogene Interval_162912 chr9 12904785 12905257 + 0 NA Intergenic Intergenic 39588 ENSMUSG00000098228.1 ENSMUSG00000098228 ENSMUST00000182425 Gm21070 processed_pseudogene Interval_128396 chr5 113110965 113111170 + 0 NA intron (ENSMUSG00000051339.10, intron 6 of 12) protein_coding-intron (ENSMUSG00000051339.10, intron 1 of 7) 8397 ENSMUSG00000104576.1 ENSMUSG00000104576 ENSMUST00000197638 F830115B05Rik TEC Interval_17900 chr10 80684315 80684811 + 0 NA TTS (ENSMUSG00000003348.10) protein_coding-TTS (ENSMUSG00000003348.10) -8270 ENSMUSG00000020190.13 ENSMUSG00000020190 ENSMUST00000199949 Mknk2 protein_coding Interval_90513 chr2 30884788 30885980 + 0 NA Intergenic Intergenic 38973 ENSMUSG00000084143.1 ENSMUSG00000084143 ENSMUST00000117436 Gm13400 processed_pseudogene Interval_116428 chr4 111798416 111799332 + 0 NA intron (ENSMUSG00000034401.16, intron 4 of 6) protein_coding-intron (ENSMUSG00000034401.16, intron 9 of 12) -7204 ENSMUSG00000082686.1 ENSMUSG00000082686 ENSMUST00000120507 Gm12961 processed_pseudogene Interval_104378 chr3 64842230 64843538 + 0 NA intron (ENSMUSG00000097538.1, intron 1 of 8) protein_coding-intron (ENSMUSG00000062200.14, intron 1 of 4) 1859 ENSMUSG00000097538.1 ENSMUSG00000097538 ENSMUST00000177146 Gm26939 processed_transcript Interval_58574 chr15 36261059 36262424 + 0 NA intron (ENSMUSG00000022280.9, intron 2 of 7) protein_coding-intron (ENSMUSG00000022280.9, intron 2 of 9) 21357 ENSMUSG00000022280.9 ENSMUSG00000022280 ENSMUST00000227735 Rnf19a protein_coding Interval_163469 chr9 21583005 21583785 + 0 NA intron (ENSMUSG00000032185.15, intron 7 of 13) protein_coding-intron (ENSMUSG00000032185.15, intron 7 of 15) -3950 ENSMUSG00000032185.15 ENSMUSG00000032185 ENSMUST00000130100 Carm1 protein_coding Interval_105930 chr3 90136493 90137421 + 0 NA exon (ENSMUSG00000027939.11, exon 12 of 40) protein_coding-exon (ENSMUSG00000027939.11, exon 12 of 40) 10190 ENSMUSG00000104649.1 ENSMUSG00000104649 ENSMUST00000198020 Gm43712 unprocessed_pseudogene Interval_145937 chr7 42474223 42474477 + 0 NA exon (ENSMUSG00000092416.2, exon 7 of 7) protein_coding-exon (ENSMUSG00000092416.2, exon 7 of 7) 3013 ENSMUSG00000092416.2 ENSMUSG00000092416 ENSMUST00000173439 Zfp141 protein_coding Interval_143521 chr7 11616868 11617637 + 0 NA Intergenic Intergenic -7790 ENSMUSG00000109626.1 ENSMUSG00000109626 ENSMUST00000211763 Gm18641 processed_pseudogene Interval_174536 chrX 157445645 157445908 + 0 NA TTS (ENSMUSG00000071708.11) protein_coding-TTS (ENSMUSG00000071708.11) 15085 ENSMUSG00000071708.11 ENSMUSG00000071708 ENSMUST00000123770 Sms protein_coding Interval_74291 chr17 48588980 48589775 + 0 NA Intergenic Intergenic -28446 ENSMUSG00000077708.1 ENSMUSG00000077708 ENSMUST00000104520 Gm24071 snoRNA Interval_9607 chr1 160184033 160185168 + 0 NA Intergenic Intergenic -10615 ENSMUSG00000058267.13 ENSMUSG00000058267 ENSMUST00000097193 Mrps14 protein_coding Interval_59094 chr15 43679040 43679690 + 0 NA Intergenic Intergenic -129096 ENSMUSG00000115407.1 ENSMUSG00000115407 ENSMUST00000226778 Gm2140 processed_pseudogene Interval_137048 chr6 66951288 66951605 + 0 NA intron (ENSMUSG00000036402.13, intron 3 of 4) protein_coding-intron (ENSMUSG00000036402.13, intron 3 of 4) 54555 ENSMUSG00000036402.13 ENSMUSG00000036402 ENSMUST00000204862 Gng12 protein_coding Interval_84169 chr19 8135557 8136319 + 0 NA Intergenic Intergenic -3956 ENSMUSG00000063590.3 ENSMUSG00000063590 ENSMUST00000065651 Slc22a28 protein_coding Interval_107930 chr3 116939808 116940039 + 0 NA TTS (ENSMUSG00000106073.1) TEC-TTS (ENSMUSG00000106073.1) 4407 ENSMUSG00000106073.1 ENSMUSG00000106073 ENSMUST00000196227 Gm42892 TEC Interval_93999 chr2 80602331 80603346 + 0 NA exon (ENSMUSG00000083284.1, exon 1 of 1) processed_pseudogene-exon (ENSMUSG00000083284.1, exon 1 of 1) 105 ENSMUSG00000083284.1 ENSMUSG00000083284 ENSMUST00000121557 Gm13688 processed_pseudogene Interval_60737 chr15 76448993 76449333 + 0 NA promoter-TSS (ENSMUSG00000022558.16) protein_coding-promoter-TSS (ENSMUSG00000022558.16) 6865 ENSMUSG00000022557.11 ENSMUSG00000022557 ENSMUST00000229132 Bop1 protein_coding Interval_82571 chr18 75222839 75224255 + 0 NA intron (ENSMUSG00000035765.10, intron 14 of 16) protein_coding-intron (ENSMUSG00000035765.10, intron 14 of 16) -40733 ENSMUSG00000094153.2 ENSMUSG00000094153 ENSMUST00000179328 Gm8807 processed_pseudogene Interval_124421 chr5 45866221 45866417 + 0 NA Intergenic Intergenic 8677 ENSMUSG00000105459.1 ENSMUSG00000105459 ENSMUST00000198191 4930449I04Rik TEC Interval_77406 chr17 88497882 88499122 + 0 NA Intergenic Intergenic -34525 ENSMUSG00000103075.1 ENSMUSG00000103075 ENSMUST00000195386 Gm38109 TEC Interval_42103 chr13 8794507 8795109 + 0 NA Intergenic Intergenic 3594 ENSMUSG00000113391.1 ENSMUSG00000113391 ENSMUST00000221553 Gm48327 TEC Interval_174096 chrX 134674879 134675362 + 0 NA Intergenic Intergenic -6400 ENSMUSG00000082655.1 ENSMUSG00000082655 ENSMUST00000117957 Gm7857 processed_pseudogene Interval_32219 chr11 106246828 106247893 + 0 NA intron (ENSMUSG00000020705.6, intron 17 of 17) protein_coding-intron (ENSMUSG00000020705.6, intron 17 of 17) 5194 ENSMUSG00000020706.13 ENSMUSG00000020706 ENSMUST00000143884 Ftsj3 protein_coding Interval_150097 chr7 105810449 105811559 + 0 NA promoter-TSS (ENSMUSG00000030879.10) protein_coding-promoter-TSS (ENSMUSG00000030879.10) 24 ENSMUSG00000030879.10 ENSMUSG00000030879 ENSMUST00000176887 Mrpl17 protein_coding Interval_5366 chr1 87926162 87926461 + 0 NA exon (ENSMUSG00000070738.10, exon 15 of 30) protein_coding-exon (ENSMUSG00000070738.10, exon 15 of 30) 8413 ENSMUSG00000070738.10 ENSMUSG00000070738 ENSMUST00000189448 Dgkd protein_coding Interval_79372 chr18 31375447 31376030 + 0 NA Intergenic Intergenic 14365 ENSMUSG00000095685.1 ENSMUSG00000095685 ENSMUST00000179362 Gm23283 miRNA Interval_1492 chr1 24112093 24112436 + 0 NA Intergenic Intergenic 11639 ENSMUSG00000102398.1 ENSMUSG00000102398 ENSMUST00000192408 Gm37580 TEC Interval_79158 chr18 25118049 25118577 + 0 NA intron (ENSMUSG00000034295.10, intron 21 of 24) protein_coding-intron (ENSMUSG00000034295.10, intron 23 of 26) 50381 ENSMUSG00000024269.11 ENSMUSG00000024269 ENSMUST00000115817 Tpgs2 protein_coding Interval_80201 chr18 38203468 38204060 + 0 NA promoter-TSS (ENSMUSG00000051375.15) protein_coding-promoter-TSS (ENSMUSG00000051375.15) 76 ENSMUSG00000051375.15 ENSMUSG00000051375 ENSMUST00000193828 Pcdh1 protein_coding Interval_69017 chr16 90149717 90152301 + 0 NA Intergenic Intergenic -12171 ENSMUSG00000116553.1 ENSMUSG00000116553 ENSMUST00000231626 Gm7307 processed_pseudogene Interval_50773 chr14 19749609 19752672 + 0 NA promoter-TSS (ENSMUSG00000021806.4) protein_coding-promoter-TSS (ENSMUSG00000021806.4) -144 ENSMUSG00000021806.4 ENSMUSG00000021806 ENSMUST00000224057 Nid2 protein_coding Interval_123757 chr5 35256448 35257202 + 0 NA Intergenic Intergenic -21494 ENSMUSG00000045318.6 ENSMUSG00000045318 ENSMUST00000049545 Adra2c protein_coding Interval_105878 chr3 89880201 89880885 + 0 NA intron (ENSMUSG00000027947.11, intron 6 of 9) protein_coding-intron (ENSMUSG00000027947.11, intron 6 of 9) -32373 ENSMUSG00000105941.1 ENSMUSG00000105941 ENSMUST00000198429 Gm42809 antisense Interval_111333 chr4 19156332 19157145 + 0 NA Intergenic Intergenic -34212 ENSMUSG00000073991.4 ENSMUSG00000073991 ENSMUST00000137780 Cnbd1 protein_coding Interval_79153 chr18 25088654 25089601 + 0 NA intron (ENSMUSG00000034295.10, intron 15 of 24) protein_coding-intron (ENSMUSG00000034295.10, intron 17 of 26) 79567 ENSMUSG00000024269.11 ENSMUSG00000024269 ENSMUST00000115817 Tpgs2 protein_coding Interval_72794 chr17 32215280 32216228 + 0 NA intron (ENSMUSG00000024002.18, intron 7 of 8) protein_coding-intron (ENSMUSG00000024002.18, intron 8 of 19) -26205 ENSMUSG00000037577.13 ENSMUSG00000037577 ENSMUST00000162117 Ephx3 protein_coding Interval_44712 chr13 47480116 47480648 + 0 NA Intergenic Intergenic 118996 ENSMUSG00000114843.1 ENSMUSG00000114843 ENSMUST00000224000 Gm35733 lincRNA Interval_80834 chr18 48067886 48068148 + 0 NA TTS (ENSMUSG00000118097.1) processed_pseudogene-TTS (ENSMUSG00000118097.1) 2005 ENSMUSG00000118097.1 ENSMUSG00000118097 ENSMUST00000236601 Gm5237 processed_pseudogene Interval_151238 chr7 120035169 120035607 + 0 NA exon (ENSMUSG00000052273.4, exon 27 of 61) protein_coding-exon (ENSMUSG00000052273.4, exon 27 of 61) 59892 ENSMUSG00000052273.4 ENSMUSG00000052273 ENSMUST00000213993 Dnah3 protein_coding Interval_9791 chr1 162359000 162360095 + 0 NA intron (ENSMUSG00000040265.16, intron 2 of 5) protein_coding-intron (ENSMUSG00000040265.16, intron 2 of 19) 43455 ENSMUSG00000089933.1 ENSMUSG00000089933 ENSMUST00000160695 Gm16101 processed_pseudogene Interval_166461 chr9 59678363 59680921 + 0 NA promoter-TSS (ENSMUSG00000074259.10) protein_coding-promoter-TSS (ENSMUSG00000074259.10) 6828 ENSMUSG00000111394.1 ENSMUSG00000111394 ENSMUST00000214037 Gm49759 TEC Interval_110532 chr4 3648795 3649453 + 0 NA Intergenic Intergenic -7384 ENSMUSG00000085394.1 ENSMUSG00000085394 ENSMUST00000139600 2210414B05Rik lincRNA Interval_43160 chr13 24771663 24772867 + 0 NA Intergenic Intergenic -10368 ENSMUSG00000006715.11 ENSMUSG00000006715 ENSMUST00000177253 Gmnn protein_coding Interval_3018 chr1 52244181 52244404 + 0 NA Intergenic Intergenic 44803 ENSMUSG00000099648.1 ENSMUSG00000099648 ENSMUST00000185256 Gm5975 processed_pseudogene Interval_110132 chr3 153619824 153620204 + 0 NA intron (ENSMUSG00000052544.9, intron 1 of 4) protein_coding-intron (ENSMUSG00000052544.9, intron 1 of 2) -1688 ENSMUSG00000089376.1 ENSMUSG00000089376 ENSMUST00000158751 Gm22136 misc_RNA Interval_68565 chr16 78827526 78828641 + 0 NA Intergenic Intergenic 70350 ENSMUSG00000116730.1 ENSMUSG00000116730 ENSMUST00000232014 4930403O18Rik TEC Interval_55386 chr14 86387090 86387282 + 0 NA Intergenic Intergenic -21336 ENSMUSG00000087812.1 ENSMUSG00000087812 ENSMUST00000157187 Gm25115 snRNA Interval_42920 chr13 21395781 21396818 + 0 NA TTS (ENSMUSG00000098790.1) miRNA-TTS (ENSMUSG00000098790.1) 339 ENSMUSG00000098790.1 ENSMUSG00000098790 ENSMUST00000184464 Mir6942 miRNA Interval_87013 chr19 45549444 45549653 + 0 NA Intergenic Intergenic 10983 ENSMUSG00000025218.6 ENSMUSG00000025218 ENSMUST00000026239 Poll protein_coding Interval_174792 chrX 166641125 166641839 + 0 NA Intergenic Intergenic -19940 ENSMUSG00000087677.1 ENSMUSG00000087677 ENSMUST00000156526 Gm15226 lincRNA Interval_157483 chr8 70659261 70660676 + 0 NA promoter-TSS (ENSMUSG00000056204.8) protein_coding-promoter-TSS (ENSMUSG00000056204.8) -317 ENSMUSG00000056204.8 ENSMUSG00000056204 ENSMUST00000210786 Pgpep1 protein_coding Interval_39228 chr12 86054339 86054590 + 0 NA TTS (ENSMUSG00000012609.19) protein_coding-TTS (ENSMUSG00000012609.19) -14709 ENSMUSG00000103301.1 ENSMUSG00000103301 ENSMUST00000192206 Gm37804 TEC Interval_36328 chr12 41325909 41326362 + 0 NA intron (ENSMUSG00000056899.10, intron 3 of 5) protein_coding-intron (ENSMUSG00000056899.10, intron 4 of 6) 21955 ENSMUSG00000113086.1 ENSMUSG00000113086 ENSMUST00000223331 Gm47376 antisense Interval_72669 chr17 31452823 31453364 + 0 NA promoter-TSS (ENSMUSG00000041119.12) protein_coding-promoter-TSS (ENSMUSG00000041119.12) 8742 ENSMUSG00000118081.1 ENSMUSG00000118081 ENSMUST00000236844 Gm50138 antisense Interval_26205 chr11 55077221 55078517 + 0 NA intron (ENSMUSG00000049588.13, intron 1 of 5) protein_coding-intron (ENSMUSG00000049588.13, intron 1 of 6) 262 ENSMUSG00000049588.13 ENSMUSG00000049588 ENSMUST00000108880 Ccdc69 protein_coding Interval_78627 chr18 15759371 15760547 + 0 NA intron (ENSMUSG00000047161.12, intron 1 of 5) protein_coding-intron (ENSMUSG00000047161.12, intron 1 of 5) 198 ENSMUSG00000047161.12 ENSMUSG00000047161 ENSMUST00000130553 Chst9 protein_coding Interval_149431 chr7 98471873 98472093 + 0 NA intron (ENSMUSG00000074003.4, intron 1 of 4) protein_coding-intron (ENSMUSG00000074003.4, intron 14 of 17) 450 ENSMUSG00000074003.4 ENSMUSG00000074003 ENSMUST00000206524 Gucy2d protein_coding Interval_155006 chr8 25627049 25628217 + 0 NA intron (ENSMUSG00000054823.16, intron 1 of 9) protein_coding-intron (ENSMUSG00000054823.16, intron 1 of 7) -4317 ENSMUSG00000088037.1 ENSMUSG00000088037 ENSMUST00000157412 Gm24992 snoRNA Interval_136392 chr6 54056899 54058103 + 0 NA intron (ENSMUSG00000004633.17, intron 1 of 4) protein_coding-intron (ENSMUSG00000004633.17, intron 1 of 12) 78772 ENSMUSG00000108060.2 ENSMUSG00000108060 ENSMUST00000203047 4921529L05Rik processed_transcript Interval_100846 chr2 172856734 172857343 + 0 NA Intergenic Intergenic 7303 ENSMUSG00000093160.1 ENSMUSG00000093160 ENSMUST00000175419 Gm22773 miRNA Interval_940 chr1 13322940 13323184 + 0 NA intron (ENSMUSG00000005886.14, intron 1 of 12) protein_coding-intron (ENSMUSG00000005886.14, intron 1 of 22) 11547 ENSMUSG00000087782.1 ENSMUSG00000087782 ENSMUST00000157157 Gm23169 snRNA Interval_170888 chr9 111571513 111571992 + 0 NA intron (ENSMUSG00000032502.8, intron 9 of 9) protein_coding-intron (ENSMUSG00000032502.8, intron 10 of 10) 10329 ENSMUSG00000106232.1 ENSMUSG00000106232 ENSMUST00000197414 Gm43236 antisense Interval_72972 chr17 33891984 33893513 + 0 NA Intergenic Intergenic -2117 ENSMUSG00000079553.11 ENSMUSG00000079553 ENSMUST00000172608 Kifc1 protein_coding Interval_82935 chr18 79661398 79661597 + 0 NA Intergenic Intergenic -8385 ENSMUSG00000117787.1 ENSMUSG00000117787 ENSMUST00000236834 Gm50177 processed_pseudogene Interval_126324 chr5 86675298 86675728 + 0 NA intron (ENSMUSG00000035861.6, intron 1 of 9) protein_coding-intron (ENSMUSG00000035861.6, intron 1 of 9) 849 ENSMUSG00000035861.6 ENSMUSG00000035861 ENSMUST00000038448 Tmprss11b protein_coding Interval_69728 chr16 95895972 95896393 + 0 NA intron (ENSMUSG00000117232.1, intron 1 of 3) lincRNA-intron (ENSMUSG00000117232.1, intron 2 of 3) -4216 ENSMUSG00000085903.1 ENSMUSG00000085903 ENSMUST00000144984 Gm15340 lincRNA Interval_150926 chr7 116370510 116371153 + 0 NA intron (ENSMUSG00000030660.9, intron 14 of 33) protein_coding-intron (ENSMUSG00000030660.9, intron 13 of 32) 28886 ENSMUSG00000108500.1 ENSMUSG00000108500 ENSMUST00000206710 Gm45033 TEC Interval_45843 chr13 58509177 58510282 + 0 NA Intergenic Intergenic -36299 ENSMUSG00000114234.1 ENSMUSG00000114234 ENSMUST00000223882 Gm3131 processed_pseudogene Interval_146834 chr7 52815722 52815927 + 0 NA Intergenic Intergenic 60359 ENSMUSG00000074092.5 ENSMUSG00000074092 ENSMUST00000117187 Gm6181 processed_pseudogene Interval_158579 chr8 84611037 84611664 + 0 NA exon (ENSMUSG00000086067.1, exon 5 of 5) antisense-exon (ENSMUSG00000086067.1, exon 5 of 5) 5834 ENSMUSG00000086067.1 ENSMUSG00000086067 ENSMUST00000127527 Gm16183 antisense Interval_58087 chr15 27785286 27785882 + 0 NA intron (ENSMUSG00000022263.10, intron 33 of 35) protein_coding-intron (ENSMUSG00000022263.10, intron 34 of 56) -70723 ENSMUSG00000115641.1 ENSMUSG00000115641 ENSMUST00000228765 Gm9891 TEC Interval_138128 chr6 85360617 85360870 + 0 NA intron (ENSMUSG00000051343.11, intron 1 of 5) protein_coding-intron (ENSMUSG00000051343.11, intron 1 of 4) -19106 ENSMUSG00000051343.11 ENSMUSG00000051343 ENSMUST00000204504 Rab11fip5 protein_coding Interval_92317 chr2 58647808 58648172 + 0 NA intron (ENSMUSG00000026839.17, intron 1 of 1) protein_coding-intron (ENSMUSG00000026839.17, intron 1 of 7) 14909 ENSMUSG00000026839.17 ENSMUSG00000026839 ENSMUST00000128864 Upp2 protein_coding Interval_30740 chr11 96208710 96209718 + 0 NA Intergenic Intergenic -8903 ENSMUSG00000099133.1 ENSMUSG00000099133 ENSMUST00000184648 Gm27605 misc_RNA Interval_159733 chr8 99663392 99664171 + 0 NA promoter-TSS (ENSMUSG00000083586.2) unprocessed_pseudogene-promoter-TSS (ENSMUSG00000083586.2) -238 ENSMUSG00000083586.2 ENSMUSG00000083586 ENSMUST00000118240 Gm8688 unprocessed_pseudogene Interval_74740 chr17 56260958 56261676 + 0 NA exon (ENSMUSG00000043683.4, exon 1 of 1) protein_coding-exon (ENSMUSG00000043683.4, exon 1 of 1) 4507 ENSMUSG00000043683.4 ENSMUSG00000043683 ENSMUST00000060253 Fem1a protein_coding Interval_44340 chr13 43875541 43876305 + 0 NA Intergenic Intergenic 3121 ENSMUSG00000089107.1 ENSMUSG00000089107 ENSMUST00000158482 Gm23117 snRNA Interval_75160 chr17 64143278 64143499 + 0 NA Intergenic Intergenic 178227 ENSMUSG00000080455.1 ENSMUSG00000080455 ENSMUST00000116805 Gm24194 miRNA Interval_12490 chr1 194302627 194302965 + 0 NA Intergenic Intergenic -80037 ENSMUSG00000103692.1 ENSMUSG00000103692 ENSMUST00000193395 4930503O07Rik lincRNA Interval_76665 chr17 83295342 83296653 + 0 NA Intergenic Intergenic 7451 ENSMUSG00000094256.2 ENSMUSG00000094256 ENSMUST00000077420 Rpl21-ps7 processed_pseudogene Interval_117189 chr4 120380763 120381506 + 0 NA Intergenic Intergenic -24247 ENSMUSG00000000085.16 ENSMUSG00000000085 ENSMUST00000133169 Scmh1 protein_coding Interval_22395 chr11 9523841 9524054 + 0 NA intron (ENSMUSG00000004668.14, intron 44 of 61) protein_coding-intron (ENSMUSG00000004668.14, intron 44 of 61) 181676 ENSMUSG00000104137.1 ENSMUSG00000104137 ENSMUST00000195362 Gm36954 TEC Interval_97935 chr2 145900327 145900769 + 0 NA Intergenic Intergenic -2709 ENSMUSG00000002728.14 ENSMUSG00000002728 ENSMUST00000129502 Naa20 protein_coding Interval_19537 chr10 102511281 102512428 + 0 NA promoter-TSS (ENSMUSG00000044921.5) protein_coding-promoter-TSS (ENSMUSG00000044921.5) -402 ENSMUSG00000044921.5 ENSMUSG00000044921 ENSMUST00000055355 Rassf9 protein_coding Interval_25104 chr11 43976040 43976885 + 0 NA intron (ENSMUSG00000087172.1, intron 1 of 6) lincRNA-intron (ENSMUSG00000087172.1, intron 1 of 6) 17373 ENSMUSG00000087172.1 ENSMUSG00000087172 ENSMUST00000148504 Gm12153 lincRNA Interval_23160 chr11 20236332 20236666 + 0 NA intron (ENSMUSG00000044066.14, intron 4 of 6) protein_coding-intron (ENSMUSG00000044066.14, intron 4 of 6) 12930 ENSMUSG00000044066.14 ENSMUSG00000044066 ENSMUST00000161218 Cep68 protein_coding Interval_33609 chr11 117478789 117479593 + 0 NA TTS (ENSMUSG00000110653.1) lincRNA-TTS (ENSMUSG00000110653.1) 3406 ENSMUSG00000110653.1 ENSMUSG00000110653 ENSMUST00000212879 Gm34418 lincRNA Interval_98230 chr2 150217660 150219249 + 0 NA intron (ENSMUSG00000060336.6, intron 1 of 3) protein_coding-intron (ENSMUSG00000060336.6, intron 1 of 3) 381 ENSMUSG00000060336.6 ENSMUSG00000060336 ENSMUST00000073782 Zfp937 protein_coding Interval_98914 chr2 155985786 155985988 + 0 NA promoter-TSS (ENSMUSG00000038241.16) protein_coding-promoter-TSS (ENSMUSG00000038241.16) 4 ENSMUSG00000038241.16 ENSMUSG00000038241 ENSMUST00000128683 Cep250 protein_coding Interval_42922 chr13 21401658 21402814 + 0 NA exon (ENSMUSG00000021327.19, exon 2 of 3) protein_coding-exon (ENSMUSG00000021327.19, exon 2 of 3) 519 ENSMUSG00000021327.19 ENSMUSG00000021327 ENSMUST00000151467 Zkscan3 protein_coding Interval_53051 chr14 53935232 53937401 + 0 NA intron (ENSMUSG00000105963.1, intron 3 of 3) antisense-intron (ENSMUSG00000105963.1, intron 3 of 3) 9338 ENSMUSG00000104650.1 ENSMUSG00000104650 ENSMUST00000198117 Trav22 TR_V_pseudogene Interval_92786 chr2 65426335 65426812 + 0 NA Intergenic Intergenic -50291 ENSMUSG00000088197.1 ENSMUSG00000088197 ENSMUST00000157572 Gm24138 snoRNA Interval_168497 chr9 82565478 82565696 + 0 NA Intergenic Intergenic 40596 ENSMUSG00000098420.1 ENSMUSG00000098420 ENSMUST00000185049 Gm27249 processed_pseudogene Interval_65059 chr16 18761416 18762085 + 0 NA Intergenic Intergenic -15097 ENSMUSG00000041378.2 ENSMUSG00000041378 ENSMUST00000043577 Cldn5 protein_coding Interval_128236 chr5 111928907 111929776 + 0 NA Intergenic Intergenic 14894 ENSMUSG00000106060.1 ENSMUSG00000106060 ENSMUST00000197648 Gm42488 lincRNA Interval_83140 chr18 82005955 82007171 + 0 NA Intergenic Intergenic 10729 ENSMUSG00000118278.1 ENSMUSG00000118278 ENSMUST00000236169 Gm50293 TEC Interval_145429 chr7 34707447 34708125 + 0 NA intron (ENSMUSG00000060402.8, intron 2 of 2) protein_coding-intron (ENSMUSG00000060402.8, intron 2 of 3) -33787 ENSMUSG00000087127.1 ENSMUSG00000087127 ENSMUST00000126294 Gm12756 lincRNA Interval_64073 chr16 7224079 7224641 + 0 NA promoter-TSS (ENSMUSG00000008658.16) protein_coding-promoter-TSS (ENSMUSG00000008658.16) 30613 ENSMUSG00000008658.16 ENSMUSG00000008658 ENSMUST00000231031 Rbfox1 protein_coding Interval_3306 chr1 56380118 56380779 + 0 NA Intergenic Intergenic -70959 ENSMUSG00000100944.1 ENSMUSG00000100944 ENSMUST00000185232 Gm28900 processed_pseudogene Interval_129795 chr5 122396650 122397590 + 0 NA TTS (ENSMUSG00000029465.14) protein_coding-TTS (ENSMUSG00000029465.14) 253 ENSMUSG00000029465.14 ENSMUSG00000029465 ENSMUST00000126247 Arpc3 protein_coding Interval_78315 chr18 11927148 11927535 + 0 NA intron (ENSMUSG00000040957.15, intron 6 of 8) protein_coding-intron (ENSMUSG00000040957.15, intron 6 of 8) 14210 ENSMUSG00000117430.1 ENSMUSG00000117430 ENSMUST00000234828 Gm49968 TEC Interval_106889 chr3 101594834 101596813 + 0 NA TTS (ENSMUSG00000104693.1) sense_intronic-TTS (ENSMUSG00000104693.1) 1307 ENSMUSG00000104693.1 ENSMUSG00000104693 ENSMUST00000200347 Gm42941 sense_intronic Interval_106263 chr3 94996687 94997592 + 0 NA promoter-TSS (ENSMUSG00000084846.1) antisense-promoter-TSS (ENSMUSG00000084846.1) -143 ENSMUSG00000084846.1 ENSMUSG00000084846 ENSMUST00000135483 A730011C13Rik antisense Interval_76124 chr17 75187533 75187852 + 0 NA intron (ENSMUSG00000001870.16, intron 5 of 34) protein_coding-intron (ENSMUSG00000001870.16, intron 5 of 33) 22485 ENSMUSG00000084025.1 ENSMUSG00000084025 ENSMUST00000120159 Gm6276 processed_pseudogene Interval_90188 chr2 28907672 28909855 + 0 NA TTS (ENSMUSG00000026805.14) protein_coding-TTS (ENSMUSG00000026805.14) 6742 ENSMUSG00000026805.14 ENSMUSG00000026805 ENSMUST00000174027 Barhl1 protein_coding Interval_92764 chr2 65227438 65227695 + 0 NA intron (ENSMUSG00000034903.18, intron 1 of 2) protein_coding-intron (ENSMUSG00000034903.18, intron 1 of 12) -11190 ENSMUSG00000086881.1 ENSMUSG00000086881 ENSMUST00000137582 Gm13594 antisense Interval_26271 chr11 55555810 55556146 + 0 NA TTS (ENSMUSG00000083363.1) processed_pseudogene-TTS (ENSMUSG00000083363.1) 1038 ENSMUSG00000083363.1 ENSMUSG00000083363 ENSMUST00000120158 Gm12237 processed_pseudogene Interval_119169 chr4 135953979 135954876 + 0 NA intron (ENSMUSG00000028672.13, intron 4 of 5) protein_coding-intron (ENSMUSG00000028672.13, intron 4 of 8) 5897 ENSMUSG00000028672.13 ENSMUSG00000028672 ENSMUST00000135644 Hmgcl protein_coding Interval_20336 chr10 116973309 116973663 + 0 NA promoter-TSS (ENSMUSG00000069518.5) protein_coding-promoter-TSS (ENSMUSG00000069518.5) -278 ENSMUSG00000111966.1 ENSMUSG00000111966 ENSMUST00000219792 Gm5781 processed_pseudogene Interval_170925 chr9 112234405 112236203 + 0 NA promoter-TSS (ENSMUSG00000032503.18) protein_coding-promoter-TSS (ENSMUSG00000032503.18) 7725 ENSMUSG00000089718.1 ENSMUSG00000089718 ENSMUST00000161216 2310075C17Rik lincRNA Interval_30756 chr11 96294245 96295138 + 0 NA intron (ENSMUSG00000085645.1, intron 1 of 2) antisense-intron (ENSMUSG00000085645.1, intron 1 of 1) 2215 ENSMUSG00000000690.5 ENSMUSG00000000690 ENSMUST00000000704 Hoxb6 protein_coding Interval_158042 chr8 78243664 78243942 + 0 NA intron (ENSMUSG00000037101.16, intron 2 of 10) protein_coding-intron (ENSMUSG00000037101.16, intron 5 of 13) 30453 ENSMUSG00000037101.16 ENSMUSG00000037101 ENSMUST00000124713 Ttc29 protein_coding Interval_37566 chr12 69915395 69915855 + 0 NA intron (ENSMUSG00000021066.9, intron 1 of 2) protein_coding-intron (ENSMUSG00000021066.9, intron 2 of 14) 5866 ENSMUSG00000078370.1 ENSMUSG00000078370 ENSMUST00000082064 Gm6316 processed_pseudogene Interval_92648 chr2 61984585 61985526 + 0 NA Intergenic Intergenic -14383 ENSMUSG00000083018.1 ENSMUSG00000083018 ENSMUST00000121668 Gm13555 processed_pseudogene Interval_18406 chr10 85578071 85578924 + 0 NA intron (ENSMUSG00000020042.15, intron 3 of 16) protein_coding-intron (ENSMUSG00000020042.15, intron 3 of 9) -66706 ENSMUSG00000020042.15 ENSMUSG00000020042 ENSMUST00000145433 Btbd11 protein_coding Interval_37353 chr12 65385683 65386136 + 0 NA Intergenic Intergenic 20061 ENSMUSG00000077590.1 ENSMUSG00000077590 ENSMUST00000104402 Gm26015 snoRNA Interval_152779 chr7 137470136 137470577 + 0 NA Intergenic Intergenic 32691 ENSMUSG00000031068.8 ENSMUSG00000031068 ENSMUST00000211598 Glrx3 protein_coding Interval_111492 chr4 22131758 22132668 + 0 NA Intergenic Intergenic -14681 ENSMUSG00000082490.1 ENSMUSG00000082490 ENSMUST00000117612 Gm11880 processed_pseudogene Interval_87967 chr19 57427936 57428143 + 0 NA Intergenic Intergenic -4545 ENSMUSG00000117927.1 ENSMUSG00000117927 ENSMUST00000237878 Gm50271 lincRNA Interval_58037 chr15 27025344 27025992 + 0 NA exon (ENSMUSG00000090544.3, exon 1 of 1) processed_pseudogene-exon (ENSMUSG00000090544.3, exon 1 of 1) 340 ENSMUSG00000090544.3 ENSMUSG00000090544 ENSMUST00000169678 Gm6576 processed_pseudogene Interval_98513 chr2 152905553 152905774 + 0 NA Intergenic Intergenic -5689 ENSMUSG00000027470.9 ENSMUSG00000027470 ENSMUST00000028970 Mylk2 protein_coding Interval_37548 chr12 69783389 69784097 + 0 NA intron (ENSMUSG00000020990.5, intron 2 of 9) protein_coding-intron (ENSMUSG00000020990.5, intron 2 of 9) -6612 ENSMUSG00000020992.5 ENSMUSG00000020992 ENSMUST00000223529 4930512B01Rik processed_transcript Interval_31349 chr11 100198447 100198842 + 0 NA Intergenic Intergenic -5398 ENSMUSG00000051617.3 ENSMUSG00000051617 ENSMUST00000059707 Krt9 protein_coding Interval_42275 chr13 11524509 11524716 + 0 NA promoter-TSS (ENSMUSG00000113799.1) TEC-promoter-TSS (ENSMUSG00000113799.1) -868 ENSMUSG00000113799.1 ENSMUSG00000113799 ENSMUST00000221403 Gm47487 TEC Interval_97946 chr2 146033575 146033853 + 0 NA intron (ENSMUSG00000037143.17, intron 13 of 26) protein_coding-intron (ENSMUSG00000037143.17, intron 13 of 15) -99000 ENSMUSG00000001767.5 ENSMUSG00000001767 ENSMUST00000147904 Crnkl1 protein_coding Interval_54437 chr14 69767070 69768319 + 0 NA exon (ENSMUSG00000022074.6, exon 1 of 8) protein_coding-exon (ENSMUSG00000022074.6, exon 1 of 8) 209 ENSMUSG00000022074.6 ENSMUSG00000022074 ENSMUST00000224235 Tnfrsf10b protein_coding Interval_132691 chr5 147186068 147187330 + 0 NA Intergenic Intergenic -1997 ENSMUSG00000053129.5 ENSMUSG00000053129 ENSMUST00000065382 Gsx1 protein_coding Interval_123801 chr5 35609161 35610089 + 0 NA promoter-TSS (ENSMUSG00000029098.17) protein_coding-promoter-TSS (ENSMUSG00000029098.17) -20862 ENSMUSG00000055061.5 ENSMUSG00000055061 ENSMUST00000124643 4931431C16Rik antisense Interval_12345 chr1 192324001 192324325 + 0 NA intron (ENSMUSG00000058248.12, intron 6 of 10) protein_coding-intron (ENSMUSG00000058248.12, intron 6 of 10) -110577 ENSMUSG00000058248.12 ENSMUSG00000058248 ENSMUST00000151152 Kcnh1 protein_coding Interval_32367 chr11 107171408 107171862 + 0 NA TTS (ENSMUSG00000081103.1) processed_pseudogene-TTS (ENSMUSG00000081103.1) 597 ENSMUSG00000081103.1 ENSMUSG00000081103 ENSMUST00000117751 Rps12-ps26 processed_pseudogene Interval_53963 chr14 63859786 63861476 + 0 NA intron (ENSMUSG00000021958.5, intron 1 of 6) protein_coding-intron (ENSMUSG00000021958.5, intron 1 of 6) -39138 ENSMUSG00000021958.5 ENSMUSG00000021958 ENSMUST00000225564 Pinx1 protein_coding Interval_152917 chr7 139721579 139722516 + 0 NA Intergenic Intergenic 2648 ENSMUSG00000056777.5 ENSMUSG00000056777 ENSMUST00000072532 Rpl21-ps13 processed_pseudogene Interval_149147 chr7 95088384 95088578 + 0 NA Intergenic Intergenic -83383 ENSMUSG00000084636.1 ENSMUSG00000084636 ENSMUST00000122687 Gm23884 misc_RNA Interval_42336 chr13 12200191 12200793 + 0 NA promoter-TSS (ENSMUSG00000021311.9) protein_coding-promoter-TSS (ENSMUSG00000021311.9) -21211 ENSMUSG00000113789.1 ENSMUSG00000113789 ENSMUST00000221565 Gm47322 TEC Interval_66913 chr16 38490846 38491045 + 0 NA intron (ENSMUSG00000075122.5, intron 6 of 6) protein_coding-intron (ENSMUSG00000075122.5, intron 6 of 6) -21620 ENSMUSG00000081605.1 ENSMUSG00000081605 ENSMUST00000117656 Gm15953 processed_pseudogene Interval_135712 chr6 44210234 44212273 + 0 NA Intergenic Intergenic -127898 ENSMUSG00000107598.1 ENSMUSG00000107598 ENSMUST00000203777 Gm35216 lincRNA Interval_67644 chr16 55199016 55199308 + 0 NA Intergenic Intergenic 98824 ENSMUSG00000064310.10 ENSMUSG00000064310 ENSMUST00000143914 Zpld1 protein_coding Interval_13079 chr10 11205899 11206278 + 0 NA intron (ENSMUSG00000090112.8, intron 1 of 2) protein_coding-intron (ENSMUSG00000090112.8, intron 26 of 29) 1069 ENSMUSG00000090112.8 ENSMUSG00000090112 ENSMUST00000161910 Shprh protein_coding Interval_38320 chr12 77150164 77150411 + 0 NA Intergenic Intergenic -33855 ENSMUSG00000093114.1 ENSMUSG00000093114 ENSMUST00000175373 Gm22696 miRNA Interval_93347 chr2 72148721 72149756 + 0 NA promoter-TSS (ENSMUSG00000085439.1) antisense-promoter-TSS (ENSMUSG00000085439.1) -442 ENSMUSG00000085439.1 ENSMUSG00000085439 ENSMUST00000126462 Rapgef4os1 antisense Interval_132841 chr5 148264819 148265663 + 0 NA promoter-TSS (ENSMUSG00000029651.16) protein_coding-promoter-TSS (ENSMUSG00000029651.16) 29249 ENSMUSG00000029651.16 ENSMUSG00000029651 ENSMUST00000085554 Mtus2 protein_coding Interval_27165 chr11 63561923 63562165 + 0 NA Intergenic Intergenic 38879 ENSMUSG00000082256.1 ENSMUSG00000082256 ENSMUST00000119770 Gm12287 processed_pseudogene Interval_19969 chr10 111574241 111576926 + 0 NA Intergenic Intergenic 18690 ENSMUSG00000097082.1 ENSMUSG00000097082 ENSMUST00000181547 4933440J02Rik lincRNA Interval_47266 chr13 80126419 80126761 + 0 NA intron (ENSMUSG00000100168.2, intron 1 of 2) lincRNA-intron (ENSMUSG00000100168.2, intron 1 of 2) 3878 ENSMUSG00000100168.2 ENSMUSG00000100168 ENSMUST00000187731 Gm28526 lincRNA Interval_61862 chr15 84732065 84732728 + 0 NA promoter-TSS (ENSMUSG00000078954.9) protein_coding-promoter-TSS (ENSMUSG00000078954.9) -12130 ENSMUSG00000116396.1 ENSMUSG00000116396 ENSMUST00000229841 Gm20556 lincRNA Interval_95691 chr2 114192147 114193025 + 0 NA TTS (ENSMUSG00000040321.3) protein_coding-TTS (ENSMUSG00000040321.3) -5562 ENSMUSG00000040383.16 ENSMUSG00000040383 ENSMUST00000154317 Aqr protein_coding Interval_63131 chr15 99251290 99252674 + 0 NA promoter-TSS (ENSMUSG00000037570.16) protein_coding-promoter-TSS (ENSMUSG00000037570.16) 2471 ENSMUSG00000100599.2 ENSMUSG00000100599 ENSMUST00000190683 1700120C14Rik processed_transcript Interval_163330 chr9 20908418 20909127 + 0 NA exon (ENSMUSG00000004099.16, exon 1 of 2) protein_coding-exon (ENSMUSG00000004099.16, exon 1 of 2) 5392 ENSMUSG00000099147.1 ENSMUSG00000099147 ENSMUST00000184490 Mir7081 miRNA Interval_152218 chr7 130716248 130716962 + 0 NA intron (ENSMUSG00000030852.18, intron 1 of 6) protein_coding-intron (ENSMUSG00000030852.18, intron 1 of 17) 2928 ENSMUSG00000030852.18 ENSMUSG00000030852 ENSMUST00000207230 Tacc2 protein_coding Interval_140853 chr6 122347311 122347708 + 0 NA Intergenic Intergenic -7897 ENSMUSG00000040669.14 ENSMUSG00000040669 ENSMUST00000161210 Phc1 protein_coding Interval_138022 chr6 84317330 84317674 + 0 NA Intergenic Intergenic 92250 ENSMUSG00000107538.1 ENSMUSG00000107538 ENSMUST00000203565 Gm44127 lincRNA Interval_94705 chr2 93567742 93567982 + 0 NA Intergenic Intergenic -74526 ENSMUSG00000040310.12 ENSMUSG00000040310 ENSMUST00000111254 Alx4 protein_coding Interval_117149 chr4 120052719 120052921 + 0 NA intron (ENSMUSG00000028634.17, intron 1 of 1) protein_coding-intron (ENSMUSG00000028634.17, intron 2 of 8) -12176 ENSMUSG00000115115.1 ENSMUSG00000115115 ENSMUST00000226560 AL607142.1 protein_coding Interval_150237 chr7 108811789 108812035 + 0 NA Intergenic Intergenic 14085 ENSMUSG00000066241.2 ENSMUSG00000066241 ENSMUST00000084754 Olfr514 protein_coding Interval_122204 chr5 19565573 19566937 + 0 NA intron (ENSMUSG00000040003.18, intron 1 of 2) protein_coding-intron (ENSMUSG00000040003.18, intron 1 of 22) -50748 ENSMUSG00000088668.1 ENSMUSG00000088668 ENSMUST00000158043 Gm25335 snRNA Interval_168770 chr9 86800563 86801054 + 0 NA intron (ENSMUSG00000033419.16, intron 2 of 17) protein_coding-intron (ENSMUSG00000033419.16, intron 14 of 28) -13953 ENSMUSG00000103891.1 ENSMUSG00000103891 ENSMUST00000192170 Gm37941 TEC Interval_7235 chr1 128093958 128095538 + 0 NA intron (ENSMUSG00000036086.16, intron 1 of 12) protein_coding-intron (ENSMUSG00000036086.16, intron 1 of 20) -5417 ENSMUSG00000102782.1 ENSMUSG00000102782 ENSMUST00000194969 Gm37625 TEC Interval_37683 chr12 71094909 71097202 + 0 NA intron (ENSMUSG00000048118.17, intron 23 of 23) protein_coding-intron (ENSMUSG00000048118.17, intron 23 of 23) -15415 ENSMUSG00000021078.5 ENSMUSG00000021078 ENSMUST00000221962 Tomm20l protein_coding Interval_88094 chr19 59020568 59020792 + 0 NA intron (ENSMUSG00000041362.17, intron 5 of 7) protein_coding-intron (ENSMUSG00000041362.17, intron 9 of 16) 17605 ENSMUSG00000041362.17 ENSMUSG00000041362 ENSMUST00000237215 Shtn1 protein_coding Interval_167990 chr9 75293521 75293795 + 0 NA intron (ENSMUSG00000033590.8, intron 5 of 11) protein_coding-intron (ENSMUSG00000033590.8, intron 34 of 40) 21213 ENSMUSG00000111348.1 ENSMUSG00000111348 ENSMUST00000216737 Gm19531 antisense Interval_150232 chr7 108662042 108663298 + 0 NA Intergenic Intergenic -3802 ENSMUSG00000096209.4 ENSMUSG00000096209 ENSMUST00000076289 Olfr510 protein_coding Interval_144775 chr7 28168607 28170508 + 0 NA promoter-TSS (ENSMUSG00000046865.7) protein_coding-promoter-TSS (ENSMUSG00000046865.7) 70 ENSMUSG00000109015.1 ENSMUSG00000109015 ENSMUST00000207600 Gm31024 TEC Interval_131206 chr5 135806329 135807141 + 0 NA promoter-TSS (ENSMUSG00000039860.19) protein_coding-promoter-TSS (ENSMUSG00000039860.19) 28050 ENSMUSG00000019179.10 ENSMUSG00000019179 ENSMUST00000143747 Mdh2 protein_coding Interval_43251 chr13 27358961 27359551 + 0 NA Intergenic Intergenic 9113 ENSMUSG00000018259.13 ENSMUSG00000018259 ENSMUST00000223918 Prl8a2 protein_coding Interval_166836 chr9 63118278 63119096 + 0 NA Intergenic Intergenic 1486 ENSMUSG00000111297.1 ENSMUSG00000111297 ENSMUST00000215204 Gm6082 processed_pseudogene Interval_109917 chr3 151548992 151549418 + 0 NA Intergenic Intergenic -59138 ENSMUSG00000065138.1 ENSMUSG00000065138 ENSMUST00000083204 Gm24458 snRNA Interval_112836 chr4 45423377 45424010 + 0 NA exon (ENSMUSG00000044813.15, exon 6 of 6) protein_coding-exon (ENSMUSG00000044813.15, exon 6 of 6) -15047 ENSMUSG00000045973.18 ENSMUSG00000045973 ENSMUST00000134714 Slc25a51 protein_coding Interval_106014 chr3 90639741 90640390 + 0 NA Intergenic Intergenic 11801 ENSMUSG00000105644.1 ENSMUSG00000105644 ENSMUST00000195941 Gm19739 processed_pseudogene Interval_11109 chr1 179433824 179434037 + 0 NA intron (ENSMUSG00000055067.15, intron 1 of 11) protein_coding-intron (ENSMUSG00000055067.15, intron 1 of 5) 84075 ENSMUSG00000055067.15 ENSMUSG00000055067 ENSMUST00000194237 Smyd3 protein_coding Interval_53660 chr14 60694561 60695193 + 0 NA intron (ENSMUSG00000021990.16, intron 1 of 1) protein_coding-intron (ENSMUSG00000021990.16, intron 2 of 12) -38029 ENSMUSG00000021990.16 ENSMUSG00000021990 ENSMUST00000162939 Spata13 protein_coding Interval_1112 chr1 15814078 15815518 + 0 NA intron (ENSMUSG00000025925.14, intron 3 of 8) protein_coding-intron (ENSMUSG00000025925.14, intron 3 of 8) 7157 ENSMUSG00000025925.14 ENSMUSG00000025925 ENSMUST00000188684 Terf1 protein_coding Interval_38181 chr12 76227429 76227741 + 0 NA intron (ENSMUSG00000021056.8, intron 3 of 3) protein_coding-intron (ENSMUSG00000021056.8, intron 3 of 9) 1879 ENSMUSG00000021056.8 ENSMUSG00000021056 ENSMUST00000219327 Tex21 protein_coding Interval_69802 chr16 96684712 96685316 + 0 NA intron (ENSMUSG00000050272.10, intron 17 of 32) protein_coding-intron (ENSMUSG00000050272.10, intron 17 of 32) -38498 ENSMUSG00000117000.1 ENSMUSG00000117000 ENSMUST00000233368 Gm32509 processed_transcript Interval_5206 chr1 86449991 86450672 + 0 NA Intergenic Intergenic -23328 ENSMUSG00000101328.1 ENSMUSG00000101328 ENSMUST00000163337 Rpl30-ps6 processed_pseudogene Interval_90504 chr2 30844841 30846478 + 0 NA exon (ENSMUSG00000039476.13, exon 1 of 4) protein_coding-exon (ENSMUSG00000039476.13, exon 1 of 4) 215 ENSMUSG00000039476.13 ENSMUSG00000039476 ENSMUST00000137924 Prrx2 protein_coding Interval_68429 chr16 76365206 76366228 + 0 NA intron (ENSMUSG00000048490.14, intron 1 of 3) protein_coding-intron (ENSMUSG00000048490.14, intron 1 of 3) 8109 ENSMUSG00000048490.14 ENSMUSG00000048490 ENSMUST00000145649 Nrip1 protein_coding Interval_28138 chr11 73103632 73104693 + 0 NA intron (ENSMUSG00000005947.11, intron 2 of 25) protein_coding-intron (ENSMUSG00000005947.11, intron 2 of 30) 13579 ENSMUSG00000005947.11 ENSMUSG00000005947 ENSMUST00000006101 Itgae protein_coding Interval_57673 chr15 14779480 14779983 + 0 NA Intergenic Intergenic -44447 ENSMUSG00000092919.2 ENSMUSG00000092919 ENSMUST00000175178 Gm24080 miRNA Interval_169398 chr9 96944286 96945024 + 0 NA exon (ENSMUSG00000046997.5, exon 3 of 3) protein_coding-exon (ENSMUSG00000046997.5, exon 3 of 3) 39148 ENSMUSG00000101209.1 ENSMUSG00000101209 ENSMUST00000186232 Gm8524 processed_pseudogene Interval_61851 chr15 84664740 84666123 + 0 NA Intergenic Intergenic -4189 ENSMUSG00000036106.15 ENSMUSG00000036106 ENSMUST00000065499 Prr5 protein_coding Interval_6793 chr1 119497262 119499243 + 0 NA intron (ENSMUSG00000004451.14, intron 1 of 1) protein_coding-intron (ENSMUSG00000004451.14, intron 1 of 4) -1225 ENSMUSG00000101437.1 ENSMUSG00000101437 ENSMUST00000190805 Gm29454 processed_pseudogene Interval_119851 chr4 140502379 140502586 + 0 NA Intergenic Intergenic -56318 ENSMUSG00000118416.1 ENSMUSG00000118416 ENSMUST00000238366 Gm50453 unitary_pseudogene Interval_143384 chr7 6276231 6276503 + 0 NA intron (ENSMUSG00000053367.15, intron 11 of 13) protein_coding-intron (ENSMUSG00000053367.15, intron 13 of 15) 7243 ENSMUSG00000108949.1 ENSMUSG00000108949 ENSMUST00000208604 Gm45069 lincRNA Interval_68879 chr16 87754693 87755381 + 0 NA Intergenic Intergenic 6606 ENSMUSG00000088684.1 ENSMUSG00000088684 ENSMUST00000158059 Gm23994 snoRNA Interval_37902 chr12 72941462 72941904 + 0 NA promoter-TSS (ENSMUSG00000021098.14) protein_coding-promoter-TSS (ENSMUSG00000021098.14) 1791 ENSMUSG00000021099.6 ENSMUSG00000021099 ENSMUST00000021519 Six6 protein_coding Interval_174862 chrY 1253537 1254029 + 0 NA Intergenic Intergenic 15102 ENSMUSG00000101059.1 ENSMUSG00000101059 ENSMUST00000084813 Gm4017 processed_pseudogene Interval_36035 chr12 33482655 33483547 + 0 NA Intergenic Intergenic 13796 ENSMUSG00000112076.1 ENSMUSG00000112076 ENSMUST00000219348 Gm9368 processed_pseudogene Interval_121034 chr4 152338626 152339528 + 0 NA intron (ENSMUSG00000005045.16, intron 1 of 40) protein_coding-intron (ENSMUSG00000005045.16, intron 1 of 40) 426 ENSMUSG00000005045.16 ENSMUSG00000005045 ENSMUST00000124423 Chd5 protein_coding Interval_71219 chr17 21273466 21273709 + 0 NA Intergenic Intergenic -4117 ENSMUSG00000093449.1 ENSMUSG00000093449 ENSMUST00000176997 Vmn1r-ps149 unprocessed_pseudogene Interval_27942 chr11 71208070 71208765 + 0 NA intron (ENSMUSG00000070390.12, intron 3 of 14) protein_coding-intron (ENSMUSG00000070390.12, intron 2 of 12) 22316 ENSMUSG00000070390.12 ENSMUSG00000070390 ENSMUST00000094046 Nlrp1b protein_coding Interval_35485 chr12 22985515 22985745 + 0 NA intron (ENSMUSG00000073164.11, intron 3 of 4) lincRNA-intron (ENSMUSG00000073164.11, intron 3 of 4) -12725 ENSMUSG00000113289.1 ENSMUSG00000113289 ENSMUST00000221861 Gm48044 processed_pseudogene Interval_32679 chr11 109591745 109592418 + 0 NA intron (ENSMUSG00000041895.15, intron 4 of 7) protein_coding-intron (ENSMUSG00000041895.15, intron 4 of 11) 19886 ENSMUSG00000041895.15 ENSMUSG00000041895 ENSMUST00000153738 Wipi1 protein_coding Interval_126375 chr5 87560271 87560680 + 0 NA promoter-TSS (ENSMUSG00000029273.10) protein_coding-promoter-TSS (ENSMUSG00000029273.10) -284 ENSMUSG00000029273.10 ENSMUSG00000029273 ENSMUST00000166996 Sult1d1 protein_coding Interval_74738 chr17 56250866 56251761 + 0 NA Intergenic Intergenic -5497 ENSMUSG00000043683.4 ENSMUSG00000043683 ENSMUST00000060253 Fem1a protein_coding Interval_139317 chr6 98629936 98630384 + 0 NA intron (ENSMUSG00000107614.1, intron 2 of 4) lincRNA-intron (ENSMUSG00000107614.1, intron 2 of 4) 67514 ENSMUSG00000107614.1 ENSMUSG00000107614 ENSMUST00000204359 Gm44196 lincRNA Interval_72207 chr17 28588592 28589208 + 0 NA TTS (ENSMUSG00000004865.16) protein_coding-TTS (ENSMUSG00000004865.16) 13140 ENSMUSG00000062252.9 ENSMUSG00000062252 ENSMUST00000232974 Lhfpl5 protein_coding Interval_143954 chr7 18463973 18465268 + 0 NA Intergenic Intergenic -7932 ENSMUSG00000108906.1 ENSMUSG00000108906 ENSMUST00000208964 Gm8314 processed_pseudogene Interval_168651 chr9 85410111 85410890 + 0 NA Intergenic Intergenic 8658 ENSMUSG00000111663.1 ENSMUSG00000111663 ENSMUST00000216235 Gm48833 lincRNA Interval_152683 chr7 136220419 136220697 + 0 NA Intergenic Intergenic -47262 ENSMUSG00000110396.1 ENSMUSG00000110396 ENSMUST00000209653 Gm36737 lincRNA Interval_20707 chr10 120398437 120399496 + 0 NA intron (ENSMUSG00000056758.14, intron 3 of 5) protein_coding-intron (ENSMUSG00000056758.14, intron 3 of 4) 9443 ENSMUSG00000090191.1 ENSMUSG00000090191 ENSMUST00000161291 9230105E05Rik antisense Interval_53303 chr14 55899382 55900632 + 0 NA promoter-TSS (ENSMUSG00000022223.9) protein_coding-promoter-TSS (ENSMUSG00000022223.9) -27 ENSMUSG00000022223.9 ENSMUSG00000022223 ENSMUST00000227677 Sdr39u1 protein_coding Interval_82741 chr18 76335295 76335654 + 0 NA Intergenic Intergenic 13650 ENSMUSG00000117816.1 ENSMUSG00000117816 ENSMUST00000235901 Gm50360 processed_pseudogene Interval_141306 chr6 127092068 127092668 + 0 NA intron (ENSMUSG00000038028.9, intron 2 of 4) protein_coding-intron (ENSMUSG00000038028.9, intron 3 of 5) -7929 ENSMUSG00000097525.2 ENSMUSG00000097525 ENSMUST00000180653 Platr31 antisense Interval_154981 chr8 25475535 25477616 + 0 NA intron (ENSMUSG00000110063.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000110063.1, intron 1 of 2) 11010 ENSMUSG00000110063.1 ENSMUSG00000110063 ENSMUST00000211266 Gm31045 lincRNA Interval_39129 chr12 85329022 85330036 + 0 NA intron (ENSMUSG00000034290.9, intron 6 of 21) protein_coding-intron (ENSMUSG00000034290.9, intron 6 of 21) 9833 ENSMUSG00000034290.9 ENSMUSG00000034290 ENSMUST00000040992 Nek9 protein_coding Interval_16258 chr10 61753005 61753747 + 0 NA intron (ENSMUSG00000020086.6, intron 3 of 8) protein_coding-intron (ENSMUSG00000020086.6, intron 3 of 8) -21361 ENSMUSG00000093017.1 ENSMUSG00000093017 ENSMUST00000175276 Mir5108 miRNA Interval_145676 chr7 37267223 37267650 + 0 NA Intergenic Intergenic -31829 ENSMUSG00000099715.2 ENSMUSG00000099715 ENSMUST00000190250 Gm28077 lincRNA Interval_24559 chr11 34437136 34438315 + 0 NA exon (ENSMUSG00000020143.15, exon 26 of 26) protein_coding-exon (ENSMUSG00000020143.15, exon 26 of 26) 122967 ENSMUSG00000069911.11 ENSMUSG00000069911 ENSMUST00000093192 Insyn2b protein_coding Interval_80972 chr18 51842075 51842395 + 0 NA Intergenic Intergenic 23646 ENSMUSG00000069379.3 ENSMUSG00000069379 ENSMUST00000091905 Gm4950 processed_pseudogene Interval_137067 chr6 67128869 67129589 + 0 NA intron (ENSMUSG00000097603.3, intron 3 of 5) processed_transcript-intron (ENSMUSG00000097603.3, intron 3 of 5) 13552 ENSMUSG00000097603.3 ENSMUSG00000097603 ENSMUST00000054470 A430010J10Rik processed_transcript Interval_35716 chr12 28601871 28602787 + 0 NA intron (ENSMUSG00000036655.8, intron 3 of 6) protein_coding-intron (ENSMUSG00000036655.8, intron 3 of 6) -19814 ENSMUSG00000020636.14 ENSMUSG00000020636 ENSMUST00000020965 Allc protein_coding Interval_124632 chr5 52603448 52603663 + 0 NA Intergenic Intergenic 15457 ENSMUSG00000052295.4 ENSMUSG00000052295 ENSMUST00000064097 8030423F21Rik lincRNA Interval_107719 chr3 111883884 111884226 + 0 NA intron (ENSMUSG00000104543.1, intron 1 of 3) lincRNA-intron (ENSMUSG00000104543.1, intron 1 of 3) 2152 ENSMUSG00000104543.1 ENSMUSG00000104543 ENSMUST00000198910 Gm6602 lincRNA Interval_115279 chr4 95161006 95163140 + 0 NA TTS (ENSMUSG00000087366.7) antisense-TTS (ENSMUSG00000087366.7) 10333 ENSMUSG00000100189.1 ENSMUSG00000100189 ENSMUST00000191391 Gm28096 sense_intronic Interval_154907 chr8 24987262 24988034 + 0 NA intron (ENSMUSG00000031555.15, intron 11 of 21) protein_coding-intron (ENSMUSG00000031555.15, intron 11 of 22) 10142 ENSMUSG00000031555.15 ENSMUSG00000031555 ENSMUST00000211319 Adam9 protein_coding Interval_32110 chr11 105292001 105293438 + 0 NA promoter-TSS (ENSMUSG00000020695.14) protein_coding-promoter-TSS (ENSMUSG00000020695.14) -48113 ENSMUSG00000020695.14 ENSMUSG00000020695 ENSMUST00000151135 Mrc2 protein_coding Interval_92976 chr2 69104376 69105143 + 0 NA intron (ENSMUSG00000027035.10, intron 8 of 10) protein_coding-intron (ENSMUSG00000027035.10, intron 8 of 9) -74546 ENSMUSG00000034738.8 ENSMUSG00000034738 ENSMUST00000141276 Nostrin protein_coding Interval_88047 chr19 58391878 58392268 + 0 NA intron (ENSMUSG00000025089.15, intron 3 of 8) protein_coding-intron (ENSMUSG00000025089.15, intron 5 of 10) 62393 ENSMUSG00000025089.15 ENSMUSG00000025089 ENSMUST00000135730 Gfra1 protein_coding Interval_87606 chr19 53704789 53705534 + 0 NA intron (ENSMUSG00000043639.15, intron 1 of 13) protein_coding-intron (ENSMUSG00000043639.15, intron 1 of 13) 27855 ENSMUSG00000043639.15 ENSMUSG00000043639 ENSMUST00000161856 Rbm20 protein_coding Interval_132264 chr5 143715040 143715782 + 0 NA TTS (ENSMUSG00000051306.7) protein_coding-TTS (ENSMUSG00000051306.7) 12606 ENSMUSG00000051306.7 ENSMUSG00000051306 ENSMUST00000129606 Usp42 protein_coding Interval_44515 chr13 45571657 45572995 + 0 NA intron (ENSMUSG00000046876.16, intron 5 of 6) protein_coding-intron (ENSMUSG00000046876.16, intron 6 of 7) 26173 ENSMUSG00000000253.13 ENSMUSG00000000253 ENSMUST00000222227 Gmpr protein_coding Interval_163718 chr9 24838862 24839169 + 0 NA Intergenic Intergenic -11670 ENSMUSG00000111507.1 ENSMUSG00000111507 ENSMUST00000214455 Amd-ps6 processed_pseudogene Interval_39834 chr12 98900583 98901953 + 0 NA promoter-TSS (ENSMUSG00000051166.10) protein_coding-promoter-TSS (ENSMUSG00000051166.10) 216 ENSMUSG00000051166.10 ENSMUSG00000051166 ENSMUST00000222128 Eml5 protein_coding Interval_129284 chr5 118666247 118667088 + 0 NA intron (ENSMUSG00000018076.12, intron 2 of 4) protein_coding-intron (ENSMUSG00000018076.12, intron 2 of 30) -20951 ENSMUSG00000107115.1 ENSMUSG00000107115 ENSMUST00000201451 Gm43052 TEC Interval_87208 chr19 46897284 46898113 + 0 NA intron (ENSMUSG00000025041.17, intron 6 of 16) protein_coding-intron (ENSMUSG00000025041.17, intron 8 of 18) 16203 ENSMUSG00000117814.1 ENSMUSG00000117814 ENSMUST00000236822 Gm50431 lincRNA Interval_127147 chr5 100621143 100622030 + 0 NA Intergenic Intergenic -28830 ENSMUSG00000104993.1 ENSMUSG00000104993 ENSMUST00000197922 Gm43510 processed_pseudogene Interval_18582 chr10 88164215 88164829 + 0 NA TTS (ENSMUSG00000088843.1) snRNA-TTS (ENSMUSG00000088843.1) 551 ENSMUSG00000088843.1 ENSMUSG00000088843 ENSMUST00000158218 Gm26357 snRNA Interval_101177 chr2 178921977 178922186 + 0 NA Intergenic Intergenic 99052 ENSMUSG00000082215.3 ENSMUSG00000082215 ENSMUST00000118225 Gm14314 processed_pseudogene Interval_21476 chr10 128821155 128823000 + 0 NA promoter-TSS (ENSMUSG00000025353.5) protein_coding-promoter-TSS (ENSMUSG00000025353.5) 145 ENSMUSG00000078427.3 ENSMUSG00000078427 ENSMUST00000220381 Sarnp protein_coding Interval_53690 chr14 60914493 60914937 + 0 NA Intergenic Intergenic 123176 ENSMUSG00000060548.13 ENSMUSG00000060548 ENSMUST00000225730 Tnfrsf19 protein_coding Interval_163145 chr9 15734716 15734915 + 0 NA intron (ENSMUSG00000043885.14, intron 3 of 4) protein_coding-intron (ENSMUSG00000043885.14, intron 9 of 10) 7927 ENSMUSG00000043885.14 ENSMUSG00000043885 ENSMUST00000214954 Slc36a4 protein_coding Interval_167593 chr9 70862203 70863942 + 0 NA intron (ENSMUSG00000032207.10, intron 1 of 8) protein_coding-intron (ENSMUSG00000032207.10, intron 1 of 8) 10496 ENSMUSG00000096160.2 ENSMUSG00000096160 ENSMUST00000179930 Gm3436 processed_pseudogene Interval_30799 chr11 96536012 96536823 + 0 NA intron (ENSMUSG00000057058.16, intron 3 of 7) protein_coding-intron (ENSMUSG00000057058.16, intron 3 of 11) 52635 ENSMUSG00000057058.16 ENSMUSG00000057058 ENSMUST00000123814 Skap1 protein_coding Interval_70920 chr17 15989953 15990696 + 0 NA Intergenic Intergenic 145044 ENSMUSG00000116545.1 ENSMUSG00000116545 ENSMUST00000231929 Eif3s6-ps3 processed_pseudogene Interval_76853 chr17 84536364 84536894 + 0 NA intron (ENSMUSG00000040852.6, intron 2 of 9) protein_coding-intron (ENSMUSG00000040852.6, intron 2 of 29) 14614 ENSMUSG00000117391.1 ENSMUSG00000117391 ENSMUST00000234072 4930500A05Rik antisense Interval_66493 chr16 34294738 34295029 + 0 NA intron (ENSMUSG00000061751.16, intron 8 of 48) protein_coding-intron (ENSMUSG00000061751.16, intron 9 of 59) -198855 ENSMUSG00000061751.16 ENSMUSG00000061751 ENSMUST00000132569 Kalrn protein_coding Interval_124959 chr5 62225403 62226446 + 0 NA Intergenic Intergenic -93440 ENSMUSG00000077228.1 ENSMUSG00000077228 ENSMUST00000104040 Gm22273 snoRNA Interval_71644 chr17 25092489 25092710 + 0 NA intron (ENSMUSG00000024169.16, intron 11 of 14) protein_coding-intron (ENSMUSG00000024169.16, intron 26 of 29) -9008 ENSMUSG00000024168.8 ENSMUSG00000024168 ENSMUST00000153745 Tmem204 protein_coding Interval_60562 chr15 74967838 74968911 + 0 NA Intergenic Intergenic 12691 ENSMUSG00000022587.14 ENSMUSG00000022587 ENSMUST00000188042 Ly6e protein_coding Interval_8635 chr1 145283397 145283603 + 0 NA Intergenic Intergenic 7980 ENSMUSG00000088579.1 ENSMUSG00000088579 ENSMUST00000157954 Gm25460 snoRNA Interval_105804 chr3 89417900 89419947 + 0 NA promoter-TSS (ENSMUSG00000028044.6) protein_coding-promoter-TSS (ENSMUSG00000028044.6) 372 ENSMUSG00000042626.13 ENSMUSG00000042626 ENSMUST00000146306 Shc1 protein_coding Interval_148043 chr7 78791383 78792044 + 0 NA TTS (ENSMUSG00000030611.10) protein_coding-TTS (ENSMUSG00000030611.10) -8182 ENSMUSG00000030612.6 ENSMUSG00000030612 ENSMUST00000133949 Mrpl46 protein_coding Interval_59487 chr15 54152128 54152369 + 0 NA Intergenic Intergenic -116266 ENSMUSG00000097938.1 ENSMUSG00000097938 ENSMUST00000182320 Gm26933 processed_pseudogene Interval_75559 chr17 68019743 68020345 + 0 NA Intergenic Intergenic 94342 ENSMUSG00000117208.1 ENSMUSG00000117208 ENSMUST00000233735 Gm49945 lincRNA Interval_2733 chr1 44004745 44005032 + 0 NA Intergenic Intergenic 12580 ENSMUSG00000047343.4 ENSMUSG00000047343 ENSMUST00000159881 Mettl21c protein_coding Interval_149327 chr7 97457808 97458049 + 0 NA exon (ENSMUSG00000051727.14, exon 3 of 3) protein_coding-exon (ENSMUSG00000051727.14, exon 3 of 3) 6605 ENSMUSG00000051727.14 ENSMUSG00000051727 ENSMUST00000206279 Kctd14 protein_coding Interval_51057 chr14 21850183 21850639 + 0 NA intron (ENSMUSG00000090564.9, intron 2 of 2) antisense-intron (ENSMUSG00000090564.9, intron 2 of 2) -1724 ENSMUSG00000021773.11 ENSMUSG00000021773 ENSMUST00000177527 Comtd1 protein_coding Interval_131067 chr5 134900961 134901561 + 0 NA TTS (ENSMUSG00000040576.8) protein_coding-TTS (ENSMUSG00000040576.8) 5472 ENSMUSG00000040576.8 ENSMUSG00000040576 ENSMUST00000047305 Tmem270 protein_coding Interval_46766 chr13 70079166 70079569 + 0 NA intron (ENSMUSG00000113074.1, intron 2 of 2) lincRNA-intron (ENSMUSG00000113074.1, intron 2 of 2) 17809 ENSMUSG00000112998.1 ENSMUSG00000112998 ENSMUST00000221477 Gm47656 TEC Interval_161019 chr8 116946384 116946678 + 0 NA intron (ENSMUSG00000047388.10, intron 1 of 3) protein_coding-intron (ENSMUSG00000047388.10, intron 1 of 3) 3138 ENSMUSG00000047388.10 ENSMUSG00000047388 ENSMUST00000109099 Atmin protein_coding Interval_90165 chr2 28680627 28681174 + 0 NA intron (ENSMUSG00000026812.16, intron 18 of 22) protein_coding-intron (ENSMUSG00000026812.16, intron 18 of 22) 18774 ENSMUSG00000026809.15 ENSMUSG00000026809 ENSMUST00000145014 Spaca9 protein_coding Interval_159683 chr8 96974689 96974879 + 0 NA Intergenic Intergenic -189009 ENSMUSG00000110715.1 ENSMUSG00000110715 ENSMUST00000212776 Gm5131 processed_pseudogene Interval_124888 chr5 59449272 59450335 + 0 NA Intergenic Intergenic -62162 ENSMUSG00000105038.1 ENSMUSG00000105038 ENSMUST00000198091 Gm43044 processed_pseudogene Interval_119369 chr4 137276485 137278392 + 0 NA promoter-TSS (ENSMUSG00000036856.4) protein_coding-promoter-TSS (ENSMUSG00000036856.4) -51 ENSMUSG00000036856.4 ENSMUSG00000036856 ENSMUST00000045747 Wnt4 protein_coding Interval_41210 chr12 111803366 111803599 + 0 NA TTS (ENSMUSG00000021288.19) protein_coding-TTS (ENSMUSG00000021288.19) 6500 ENSMUSG00000021287.12 ENSMUSG00000021287 ENSMUST00000133679 Xrcc3 protein_coding Interval_135485 chr6 39580231 39581303 + 0 NA TTS (ENSMUSG00000046947.12) protein_coding-TTS (ENSMUSG00000046947.12) 4375 ENSMUSG00000046947.12 ENSMUSG00000046947 ENSMUST00000127427 Adck2 protein_coding Interval_59430 chr15 53090845 53091164 + 0 NA intron (ENSMUSG00000061731.9, intron 4 of 4) protein_coding-intron (ENSMUSG00000061731.9, intron 5 of 10) 16864 ENSMUSG00000061731.9 ENSMUSG00000061731 ENSMUST00000140798 Ext1 protein_coding Interval_144333 chr7 24530111 24531944 + 0 NA intron (ENSMUSG00000041037.8, intron 1 of 2) protein_coding-intron (ENSMUSG00000041037.8, intron 1 of 2) 338 ENSMUSG00000041037.8 ENSMUSG00000041037 ENSMUST00000049020 Irgq protein_coding Interval_30362 chr11 93872459 93873815 + 0 NA intron (ENSMUSG00000054079.12, intron 7 of 12) protein_coding-intron (ENSMUSG00000054079.12, intron 7 of 13) 3006 ENSMUSG00000054079.12 ENSMUSG00000054079 ENSMUST00000134807 Utp18 protein_coding Interval_147995 chr7 76756925 76757129 + 0 NA intron (ENSMUSG00000025754.11, intron 20 of 22) protein_coding-intron (ENSMUSG00000025754.11, intron 14 of 14) -57310 ENSMUSG00000108771.1 ENSMUSG00000108771 ENSMUST00000206401 Gm45210 TEC Interval_105605 chr3 88042147 88043737 + 0 NA promoter-TSS (ENSMUSG00000028069.16) protein_coding-promoter-TSS (ENSMUSG00000028069.16) -167 ENSMUSG00000028069.16 ENSMUSG00000028069 ENSMUST00000193398 Gpatch4 protein_coding Interval_159090 chr8 90288433 90288726 + 0 NA intron (ENSMUSG00000043668.13, intron 1 of 5) protein_coding-intron (ENSMUSG00000043668.13, intron 1 of 6) 59552 ENSMUSG00000043668.13 ENSMUSG00000043668 ENSMUST00000176034 Tox3 protein_coding Interval_74497 chr17 52179417 52179622 + 0 NA Intergenic Intergenic -125048 ENSMUSG00000117076.1 ENSMUSG00000117076 ENSMUST00000232754 Gm41600 lincRNA Interval_43879 chr13 37818276 37819024 + 0 NA intron (ENSMUSG00000039087.17, intron 1 of 3) protein_coding-intron (ENSMUSG00000039087.17, intron 1 of 3) -18860 ENSMUSG00000114370.1 ENSMUSG00000114370 ENSMUST00000224624 Gm46411 antisense Interval_164464 chr9 37229796 37230273 + 0 NA TTS (ENSMUSG00000032122.15) protein_coding-TTS (ENSMUSG00000032122.15) 5120 ENSMUSG00000032122.15 ENSMUSG00000032122 ENSMUST00000162018 Slc37a2 protein_coding Interval_138017 chr6 84227637 84229180 + 0 NA intron (ENSMUSG00000107538.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000107538.1, intron 1 of 1) 3156 ENSMUSG00000107538.1 ENSMUSG00000107538 ENSMUST00000203565 Gm44127 lincRNA Interval_2418 chr1 39177352 39178576 + 0 NA Intergenic Intergenic 9028 ENSMUSG00000098833.1 ENSMUSG00000098833 ENSMUST00000184059 Mir6349 miRNA Interval_105448 chr3 86646475 86647068 + 0 NA intron (ENSMUSG00000028080.16, intron 7 of 17) protein_coding-intron (ENSMUSG00000028080.16, intron 46 of 56) 25397 ENSMUSG00000094392.1 ENSMUSG00000094392 ENSMUST00000119949 Gm3788 processed_pseudogene Interval_118283 chr4 130025585 130025973 + 0 NA intron (ENSMUSG00000085517.7, intron 5 of 6) antisense-intron (ENSMUSG00000085517.7, intron 5 of 6) 2725 ENSMUSG00000085517.7 ENSMUSG00000085517 ENSMUST00000156271 Gm12963 antisense Interval_69331 chr16 92267776 92268179 + 0 NA Intergenic Intergenic -27639 ENSMUSG00000039672.12 ENSMUSG00000039672 ENSMUST00000113971 Kcne2 protein_coding Interval_123344 chr5 31589320 31589557 + 0 NA Intergenic Intergenic 8359 ENSMUSG00000107015.1 ENSMUSG00000107015 ENSMUST00000202297 2900076G11Rik TEC Interval_91966 chr2 52070769 52073473 + 0 NA promoter-TSS (ENSMUSG00000036202.16) protein_coding-promoter-TSS (ENSMUSG00000036202.16) 34112 ENSMUSG00000053475.5 ENSMUSG00000053475 ENSMUST00000065927 Tnfaip6 protein_coding Interval_47414 chr13 83720869 83721944 + 0 NA promoter-TSS (ENSMUSG00000050334.12) lincRNA-promoter-TSS (ENSMUSG00000050334.12) 8176 ENSMUSG00000097265.1 ENSMUSG00000097265 ENSMUST00000181705 Gm26803 lincRNA Interval_156808 chr8 60651183 60651472 + 0 NA intron (ENSMUSG00000031647.10, intron 1 of 1) protein_coding-intron (ENSMUSG00000031647.10, intron 1 of 2) -3777 ENSMUSG00000031647.10 ENSMUSG00000031647 ENSMUST00000034066 Mfap3l protein_coding Interval_76995 chr17 85458176 85458752 + 0 NA exon (ENSMUSG00000071037.6, exon 11 of 11) protein_coding-exon (ENSMUSG00000071037.6, exon 11 of 11) -40169 ENSMUSG00000097803.1 ENSMUSG00000097803 ENSMUST00000181130 Rpl31-ps16 processed_pseudogene Interval_75556 chr17 67996113 67996811 + 0 NA intron (ENSMUSG00000024043.13, intron 1 of 17) protein_coding-intron (ENSMUSG00000024043.13, intron 1 of 17) 117924 ENSMUSG00000117208.1 ENSMUSG00000117208 ENSMUST00000233735 Gm49945 lincRNA Interval_29251 chr11 82250595 82251874 + 0 NA intron (ENSMUSG00000020702.13, intron 7 of 10) protein_coding-intron (ENSMUSG00000020702.13, intron 7 of 10) 54456 ENSMUSG00000020702.13 ENSMUSG00000020702 ENSMUST00000021043 Ccl1 protein_coding Interval_101380 chr2 180912519 180912777 + 0 NA intron (ENSMUSG00000038848.14, intron 2 of 2) protein_coding-intron (ENSMUSG00000038848.14, intron 3 of 4) 7739 ENSMUSG00000038848.14 ENSMUSG00000038848 ENSMUST00000124666 Ythdf1 protein_coding Interval_132069 chr5 142592273 142592467 + 0 NA intron (ENSMUSG00000039533.8, intron 1 of 1) protein_coding-intron (ENSMUSG00000039533.8, intron 1 of 6) 16430 ENSMUSG00000039533.8 ENSMUSG00000039533 ENSMUST00000196972 Mmd2 protein_coding Interval_122210 chr5 19906464 19908160 + 0 NA promoter-TSS (ENSMUSG00000040003.18) protein_coding-promoter-TSS (ENSMUSG00000040003.18) -185303 ENSMUSG00000096882.1 ENSMUSG00000096882 ENSMUST00000083029 Gm23570 snRNA Interval_60526 chr15 74641658 74642938 + 0 NA Intergenic Intergenic 30272 ENSMUSG00000022602.14 ENSMUSG00000022602 ENSMUST00000110009 Arc protein_coding Interval_32948 chr11 113309051 113309372 + 0 NA intron (ENSMUSG00000041654.15, intron 6 of 9) protein_coding-intron (ENSMUSG00000041654.15, intron 7 of 10) -99542 ENSMUSG00000085421.1 ENSMUSG00000085421 ENSMUST00000130373 4732490B19Rik lincRNA Interval_112669 chr4 43957131 43958482 + 0 NA intron (ENSMUSG00000028480.14, intron 1 of 2) protein_coding-intron (ENSMUSG00000028480.14, intron 1 of 4) 114 ENSMUSG00000028480.14 ENSMUSG00000028480 ENSMUST00000107855 Glipr2 protein_coding Interval_112220 chr4 36390354 36391321 + 0 NA intron (ENSMUSG00000045083.14, intron 3 of 6) protein_coding-intron (ENSMUSG00000045083.14, intron 3 of 7) -53233 ENSMUSG00000084352.1 ENSMUSG00000084352 ENSMUST00000117809 Gm12370 processed_pseudogene Interval_72154 chr17 28312943 28314253 + 0 NA promoter-TSS (ENSMUSG00000007570.16) protein_coding-promoter-TSS (ENSMUSG00000007570.16) 21 ENSMUSG00000007570.16 ENSMUSG00000007570 ENSMUST00000156569 Fance protein_coding Interval_101724 chr3 9168240 9169437 + 0 NA Intergenic Intergenic -81764 ENSMUSG00000069114.8 ENSMUSG00000069114 ENSMUST00000155203 Zbtb10 protein_coding Interval_146150 chr7 44366147 44367038 + 0 NA intron (ENSMUSG00000008028.15, intron 1 of 1) protein_coding-intron (ENSMUSG00000008028.15, intron 2 of 5) 4028 ENSMUSG00000108509.1 ENSMUSG00000108509 ENSMUST00000205409 Gm44780 antisense Interval_45089 chr13 52041671 52041964 + 0 NA Intergenic Intergenic -19890 ENSMUSG00000102173.1 ENSMUSG00000102173 ENSMUST00000192362 Gm37872 TEC Interval_81093 chr18 53841600 53842419 + 0 NA Intergenic Intergenic -20179 ENSMUSG00000073563.3 ENSMUSG00000073563 ENSMUST00000236399 Csnk1g3 protein_coding Interval_92131 chr2 53672645 53673513 + 0 NA Intergenic Intergenic 23725 ENSMUSG00000083287.4 ENSMUSG00000083287 ENSMUST00000121574 Gm13502 processed_pseudogene Interval_162543 chr9 4079218 4079912 + 0 NA Intergenic Intergenic -134357 ENSMUSG00000110691.1 ENSMUSG00000110691 ENSMUST00000211927 Gm5363 processed_pseudogene Interval_95412 chr2 108812588 108812786 + 0 NA Intergenic Intergenic 62571 ENSMUSG00000083424.3 ENSMUSG00000083424 ENSMUST00000121779 Rpl35a-ps4 processed_pseudogene Interval_148680 chr7 84097892 84098875 + 0 NA Intergenic Intergenic -11881 ENSMUSG00000052353.13 ENSMUSG00000052353 ENSMUST00000147578 Cemip protein_coding Interval_138968 chr6 93885940 93886173 + 0 NA intron (ENSMUSG00000045095.16, intron 2 of 24) protein_coding-intron (ENSMUSG00000045095.16, intron 2 of 21) -4559 ENSMUSG00000089069.1 ENSMUSG00000089069 ENSMUST00000158444 Gm22840 snoRNA Interval_131566 chr5 138160334 138161594 + 0 NA promoter-TSS (ENSMUSG00000019494.14) protein_coding-promoter-TSS (ENSMUSG00000019494.14) -205 ENSMUSG00000019494.14 ENSMUSG00000019494 ENSMUST00000132639 Cops6 protein_coding Interval_20536 chr10 118667418 118668970 + 0 NA Intergenic Intergenic 47532 ENSMUSG00000112029.1 ENSMUSG00000112029 ENSMUST00000219594 Gm33337 lincRNA Interval_141209 chr6 125614119 125615238 + 0 NA intron (ENSMUSG00000001930.17, intron 4 of 14) protein_coding-intron (ENSMUSG00000001930.17, intron 17 of 51) 61715 ENSMUSG00000001930.17 ENSMUSG00000001930 ENSMUST00000146264 Vwf protein_coding Interval_165790 chr9 53115404 53116055 + 0 NA intron (ENSMUSG00000053289.8, intron 17 of 17) protein_coding-intron (ENSMUSG00000053289.8, intron 17 of 17) -48459 ENSMUSG00000111693.1 ENSMUSG00000111693 ENSMUST00000213563 Gm47986 processed_pseudogene Interval_94653 chr2 93047095 93047438 + 0 NA Intergenic Intergenic -1695 ENSMUSG00000075028.12 ENSMUSG00000075028 ENSMUST00000147339 Prdm11 protein_coding Interval_65052 chr16 18716346 18716889 + 0 NA Intergenic Intergenic -34401 ENSMUSG00000116825.1 ENSMUSG00000116825 ENSMUST00000231787 Rps2-ps7 processed_pseudogene Interval_81234 chr18 56663527 56663731 + 0 NA Intergenic Intergenic -4149 ENSMUSG00000118275.1 ENSMUSG00000118275 ENSMUST00000235398 Gm50289 processed_pseudogene Interval_144803 chr7 28350119 28351802 + 0 NA promoter-TSS (ENSMUSG00000077711.1) snoRNA-promoter-TSS (ENSMUSG00000077711.1) 36 ENSMUSG00000037563.15 ENSMUSG00000037563 ENSMUST00000155805 Rps16 protein_coding Interval_156196 chr8 45875607 45875901 + 0 NA Intergenic Intergenic -9733 ENSMUSG00000031636.7 ENSMUSG00000031636 ENSMUST00000209216 Pdlim3 protein_coding Interval_55131 chr14 78447968 78448492 + 0 NA Intergenic Intergenic -13062 ENSMUSG00000115450.1 ENSMUSG00000115450 ENSMUST00000227356 Gm4821 processed_pseudogene Interval_91460 chr2 39026977 39027283 + 0 NA promoter-TSS (ENSMUSG00000065127.1) snRNA-promoter-TSS (ENSMUSG00000065127.1) -647 ENSMUSG00000065127.1 ENSMUSG00000065127 ENSMUST00000083193 Gm26127 snRNA Interval_145648 chr7 36715249 36715463 + 0 NA intron (ENSMUSG00000021217.7, intron 1 of 1) protein_coding-intron (ENSMUSG00000021217.7, intron 1 of 1) 5182 ENSMUSG00000103882.1 ENSMUSG00000103882 ENSMUST00000194416 Gm37452 TEC Interval_58499 chr15 35249083 35250306 + 0 NA intron (ENSMUSG00000115345.1, intron 3 of 4) lincRNA-intron (ENSMUSG00000115345.1, intron 3 of 4) -46417 ENSMUSG00000022330.5 ENSMUSG00000022330 ENSMUST00000228152 Osr2 protein_coding Interval_79342 chr18 30743921 30744371 + 0 NA Intergenic Intergenic -135256 ENSMUSG00000117526.1 ENSMUSG00000117526 ENSMUST00000235078 Gm41780 processed_pseudogene Interval_60923 chr15 77866573 77868355 + 0 NA Intergenic Intergenic -26708 ENSMUSG00000084497.1 ENSMUSG00000084497 ENSMUST00000122548 Gm22107 snRNA Interval_83523 chr18 88835060 88835902 + 0 NA intron (ENSMUSG00000056153.15, intron 2 of 7) protein_coding-intron (ENSMUSG00000056153.15, intron 2 of 7) -3004 ENSMUSG00000117948.1 ENSMUSG00000117948 ENSMUST00000237769 Gm6409 processed_pseudogene Interval_89647 chr2 23985346 23985903 + 0 NA Intergenic Intergenic 63455 ENSMUSG00000026986.14 ENSMUSG00000026986 ENSMUST00000114497 Hnmt protein_coding Interval_82365 chr18 72958935 72959148 + 0 NA Intergenic Intergenic -37951 ENSMUSG00000118316.1 ENSMUSG00000118316 ENSMUST00000236243 Gm31908 lincRNA Interval_123238 chr5 30829558 30830199 + 0 NA intron (ENSMUSG00000029166.14, intron 1 of 1) protein_coding-intron (ENSMUSG00000029166.14, intron 1 of 6) -7266 ENSMUSG00000087258.1 ENSMUSG00000087258 ENSMUST00000143488 Gm15461 antisense Interval_76763 chr17 83889825 83890269 + 0 NA Intergenic Intergenic -27890 ENSMUSG00000117442.1 ENSMUSG00000117442 ENSMUST00000234364 1810073O08Rik lincRNA Interval_132082 chr5 142684359 142684722 + 0 NA Intergenic Intergenic -7972 ENSMUSG00000050822.11 ENSMUSG00000050822 ENSMUST00000058418 Slc29a4 protein_coding Interval_15495 chr10 49380134 49380402 + 0 NA intron (ENSMUSG00000056073.16, intron 4 of 8) protein_coding-intron (ENSMUSG00000056073.16, intron 9 of 15) 104211 ENSMUSG00000111935.1 ENSMUSG00000111935 ENSMUST00000218320 Gm47023 TEC Interval_85710 chr19 29944834 29946228 + 0 NA promoter-TSS (ENSMUSG00000024810.16) protein_coding-promoter-TSS (ENSMUSG00000024810.16) 20399 ENSMUSG00000024810.16 ENSMUSG00000024810 ENSMUST00000136850 Il33 protein_coding Interval_38129 chr12 75843505 75845671 + 0 NA intron (ENSMUSG00000063450.14, intron 2 of 15) protein_coding-intron (ENSMUSG00000063450.14, intron 1 of 115) 26238 ENSMUSG00000063450.14 ENSMUSG00000063450 ENSMUST00000151286 Syne2 protein_coding Interval_75975 chr17 74020181 74021158 + 0 NA intron (ENSMUSG00000038541.8, intron 4 of 4) protein_coding-intron (ENSMUSG00000038541.8, intron 4 of 4) 19809 ENSMUSG00000088060.1 ENSMUSG00000088060 ENSMUST00000157435 Gm24475 snoRNA Interval_108281 chr3 123267046 123268181 + 0 NA intron (ENSMUSG00000039234.11, intron 1 of 2) protein_coding-intron (ENSMUSG00000039234.11, intron 1 of 22) 123 ENSMUSG00000039234.11 ENSMUSG00000039234 ENSMUST00000196482 Sec24d protein_coding Interval_9245 chr1 155450230 155450444 + 0 NA Intergenic Intergenic 76806 ENSMUSG00000073535.5 ENSMUSG00000073535 ENSMUST00000194133 Gm5532 lincRNA Interval_70008 chr17 4335033 4335604 + 0 NA Intergenic Intergenic -213216 ENSMUSG00000116615.1 ENSMUSG00000116615 ENSMUST00000231319 4930548J01Rik processed_transcript Interval_117292 chr4 122770112 122770360 + 0 NA Intergenic Intergenic 23513 ENSMUSG00000083494.1 ENSMUSG00000083494 ENSMUST00000119988 Gm12873 unprocessed_pseudogene Interval_66713 chr16 36540894 36541329 + 0 NA intron (ENSMUSG00000051980.13, intron 2 of 2) protein_coding-intron (ENSMUSG00000051980.13, intron 1 of 6) 21030 ENSMUSG00000051980.13 ENSMUSG00000051980 ENSMUST00000174750 Casr protein_coding Interval_15136 chr10 42834690 42835400 + 0 NA Intergenic Intergenic -14278 ENSMUSG00000087719.1 ENSMUSG00000087719 ENSMUST00000157094 Gm26464 ribozyme Interval_13510 chr10 18873137 18873460 + 0 NA Intergenic Intergenic 13731 ENSMUSG00000111318.1 ENSMUSG00000111318 ENSMUST00000214387 Gm48483 lincRNA Interval_84058 chr19 6999469 7000372 + 0 NA TTS (ENSMUSG00000047656.9) protein_coding-TTS (ENSMUSG00000047656.9) 3789 ENSMUSG00000047656.9 ENSMUSG00000047656 ENSMUST00000088223 Trpt1 protein_coding Interval_67881 chr16 58561331 58561891 + 0 NA Intergenic Intergenic -5906 ENSMUSG00000116914.1 ENSMUSG00000116914 ENSMUST00000231586 Gm20942 processed_pseudogene Interval_147162 chr7 63956114 63958486 + 0 NA Intergenic Intergenic -4940 ENSMUSG00000108313.1 ENSMUSG00000108313 ENSMUST00000206457 Gm45052 lincRNA Interval_119690 chr4 139238015 139239257 + 0 NA intron (ENSMUSG00000028745.18, intron 1 of 8) protein_coding-intron (ENSMUSG00000028745.18, intron 1 of 8) 44525 ENSMUSG00000028745.18 ENSMUSG00000028745 ENSMUST00000132385 Capzb protein_coding Interval_103297 chr3 38255611 38255919 + 0 NA Intergenic Intergenic 12319 ENSMUSG00000092986.2 ENSMUSG00000092986 ENSMUST00000175245 Gm25574 misc_RNA Interval_79472 chr18 32146851 32148215 + 0 NA Intergenic Intergenic -5943 ENSMUSG00000097363.1 ENSMUSG00000097363 ENSMUST00000181713 Gm26717 lincRNA Interval_103937 chr3 55148191 55148442 + 0 NA intron (ENSMUSG00000048655.17, intron 1 of 7) protein_coding-intron (ENSMUSG00000048655.17, intron 2 of 7) 6028 ENSMUSG00000048655.17 ENSMUSG00000048655 ENSMUST00000161120 Ccdc169 protein_coding Interval_161054 chr8 117194365 117195139 + 0 NA intron (ENSMUSG00000052557.11, intron 7 of 10) protein_coding-intron (ENSMUSG00000052557.11, intron 7 of 10) 36615 ENSMUSG00000052557.11 ENSMUSG00000052557 ENSMUST00000162997 Gan protein_coding Interval_76023 chr17 74437799 74438736 + 0 NA TTS (ENSMUSG00000117187.1) processed_pseudogene-TTS (ENSMUSG00000117187.1) 372 ENSMUSG00000117187.1 ENSMUSG00000117187 ENSMUST00000233026 Gm4708 processed_pseudogene Interval_120318 chr4 147848004 147849274 + 0 NA promoter-TSS (ENSMUSG00000059423.13) protein_coding-promoter-TSS (ENSMUSG00000059423.13) -273 ENSMUSG00000059423.13 ENSMUSG00000059423 ENSMUST00000135798 Zfp933 protein_coding Interval_63627 chr15 102424975 102425423 + 0 NA intron (ENSMUSG00000001280.13, intron 3 of 5) protein_coding-intron (ENSMUSG00000001280.13, intron 3 of 5) 19056 ENSMUSG00000001280.13 ENSMUSG00000001280 ENSMUST00000168802 Sp1 protein_coding Interval_158011 chr8 78003902 78004697 + 0 NA Intergenic Intergenic -39711 ENSMUSG00000110382.1 ENSMUSG00000110382 ENSMUST00000209933 Gm29895 lincRNA Interval_113768 chr4 58456960 58457421 + 0 NA intron (ENSMUSG00000038668.14, intron 3 of 3) protein_coding-intron (ENSMUSG00000038668.14, intron 3 of 3) -16092 ENSMUSG00000093293.1 ENSMUSG00000093293 ENSMUST00000175552 Mir3095 miRNA Interval_128232 chr5 111901645 111902703 + 0 NA Intergenic Intergenic 42061 ENSMUSG00000106060.1 ENSMUSG00000106060 ENSMUST00000197648 Gm42488 lincRNA Interval_33720 chr11 118083530 118084328 + 0 NA intron (ENSMUSG00000033987.16, intron 4 of 4) protein_coding-intron (ENSMUSG00000033987.16, intron 37 of 80) 5265 ENSMUSG00000033987.16 ENSMUSG00000033987 ENSMUST00000018719 Dnah17 protein_coding Interval_140469 chr6 118478673 118480482 + 0 NA promoter-TSS (ENSMUSG00000072623.6) protein_coding-promoter-TSS (ENSMUSG00000072623.6) -6876 ENSMUSG00000118520.1 ENSMUSG00000118520 ENSMUST00000239020 AC140192.1 processed_pseudogene Interval_72693 chr17 31583115 31583692 + 0 NA promoter-TSS (ENSMUSG00000006705.13) protein_coding-promoter-TSS (ENSMUSG00000006705.13) -5074 ENSMUSG00000006705.13 ENSMUSG00000006705 ENSMUST00000176513 Pknox1 protein_coding Interval_111221 chr4 15033080 15034052 + 0 NA intron (ENSMUSG00000040536.15, intron 6 of 13) protein_coding-intron (ENSMUSG00000040536.15, intron 5 of 12) 10984 ENSMUSG00000087241.1 ENSMUSG00000087241 ENSMUST00000129207 Gm11844 antisense Interval_50824 chr14 20034789 20035149 + 0 NA Intergenic Intergenic 23328 ENSMUSG00000114498.1 ENSMUSG00000114498 ENSMUST00000224881 Gm48339 processed_pseudogene Interval_128488 chr5 113607767 113608584 + 0 NA Intergenic Intergenic 29387 ENSMUSG00000063430.9 ENSMUSG00000063430 ENSMUST00000198673 Wscd2 protein_coding Interval_139757 chr6 108426542 108427140 + 0 NA intron (ENSMUSG00000030102.11, intron 40 of 61) protein_coding-intron (ENSMUSG00000030102.11, intron 40 of 61) -29342 ENSMUSG00000098674.1 ENSMUSG00000098674 ENSMUST00000184343 Gm27813 misc_RNA Interval_42028 chr13 6628964 6629444 + 0 NA intron (ENSMUSG00000021196.14, intron 2 of 15) protein_coding-intron (ENSMUSG00000021196.14, intron 2 of 21) -31325 ENSMUSG00000021196.14 ENSMUSG00000021196 ENSMUST00000136585 Pfkp protein_coding Interval_120174 chr4 143190743 143191097 + 0 NA intron (ENSMUSG00000057637.13, intron 2 of 3) protein_coding-intron (ENSMUSG00000057637.13, intron 2 of 9) -13145 ENSMUSG00000087903.1 ENSMUSG00000087903 ENSMUST00000157278 Gm22039 snoRNA Interval_42059 chr13 7055486 7056017 + 0 NA intron (ENSMUSG00000114017.1, intron 2 of 2) lincRNA-intron (ENSMUSG00000114017.1, intron 2 of 2) 20565 ENSMUSG00000114017.1 ENSMUSG00000114017 ENSMUST00000222208 Gm40662 lincRNA Interval_111746 chr4 27169862 27170121 + 0 NA Intergenic Intergenic -43482 ENSMUSG00000083447.1 ENSMUSG00000083447 ENSMUST00000120562 Gm11904 processed_pseudogene Interval_56776 chr14 122024725 122026907 + 0 NA Intergenic Intergenic -8858 ENSMUSG00000071229.3 ENSMUSG00000071229 ENSMUST00000045976 Timm8a2 protein_coding Interval_75219 chr17 64801931 64803551 + 0 NA Intergenic Intergenic 33330 ENSMUSG00000024088.4 ENSMUSG00000024088 ENSMUST00000024896 4930583I09Rik protein_coding Interval_128294 chr5 112335396 112336038 + 0 NA promoter-TSS (ENSMUSG00000029345.13) protein_coding-promoter-TSS (ENSMUSG00000029345.13) 7301 ENSMUSG00000029346.12 ENSMUSG00000029346 ENSMUST00000147940 Srrd protein_coding Interval_111856 chr4 32016523 32016797 + 0 NA TTS (ENSMUSG00000028284.13) protein_coding-TTS (ENSMUSG00000028284.13) -17919 ENSMUSG00000084440.1 ENSMUSG00000084440 ENSMUST00000122491 Gm26254 snRNA Interval_165582 chr9 49873472 49874231 + 0 NA Intergenic Intergenic -47876 ENSMUSG00000094255.1 ENSMUSG00000094255 ENSMUST00000178565 Gm25633 snRNA Interval_173182 chrX 73914598 73915531 + 0 NA intron (ENSMUSG00000031389.17, intron 6 of 14) protein_coding-intron (ENSMUSG00000031389.17, intron 6 of 14) -3793 ENSMUSG00000031389.17 ENSMUSG00000031389 ENSMUST00000123283 Arhgap4 protein_coding Interval_52110 chr14 36531235 36532467 + 0 NA Intergenic Intergenic -80266 ENSMUSG00000088766.1 ENSMUSG00000088766 ENSMUST00000158141 Gm24394 snoRNA Interval_152441 chr7 133035950 133036151 + 0 NA intron (ENSMUSG00000030970.16, intron 2 of 4) protein_coding-intron (ENSMUSG00000030970.16, intron 2 of 10) -52498 ENSMUSG00000085663.1 ENSMUSG00000085663 ENSMUST00000131085 Gm15718 antisense Interval_106495 chr3 96696134 96697721 + 0 NA promoter-TSS (ENSMUSG00000028101.18) protein_coding-promoter-TSS (ENSMUSG00000028101.18) -267 ENSMUSG00000028101.18 ENSMUSG00000028101 ENSMUST00000162156 Pias3 protein_coding Interval_123179 chr5 30416332 30416960 + 0 NA intron (ENSMUSG00000062372.13, intron 5 of 46) protein_coding-intron (ENSMUSG00000062372.13, intron 5 of 46) 45213 ENSMUSG00000062372.13 ENSMUSG00000062372 ENSMUST00000128177 Otof protein_coding Interval_73396 chr17 36970325 36971515 + 0 NA exon (ENSMUSG00000083534.1, exon 2 of 5) unprocessed_pseudogene-exon (ENSMUSG00000083534.1, exon 2 of 5) 476 ENSMUSG00000083534.1 ENSMUSG00000083534 ENSMUST00000119193 H2-M6-ps unprocessed_pseudogene Interval_80256 chr18 38577517 38578626 + 0 NA Intergenic Intergenic -4779 ENSMUSG00000118296.1 ENSMUSG00000118296 ENSMUST00000236625 Gm19100 processed_pseudogene Interval_116734 chr4 116993873 116996342 + 0 NA promoter-TSS (ENSMUSG00000028684.14) protein_coding-promoter-TSS (ENSMUSG00000028684.14) -1510 ENSMUSG00000028684.14 ENSMUSG00000028684 ENSMUST00000139816 Urod protein_coding Interval_132120 chr5 142836919 142837335 + 0 NA Intergenic Intergenic 16072 ENSMUSG00000082308.1 ENSMUSG00000082308 ENSMUST00000117498 Gm15770 processed_pseudogene Interval_82428 chr18 73925423 73926443 + 0 NA Intergenic Intergenic 66546 ENSMUSG00000064036.15 ENSMUSG00000064036 ENSMUST00000134847 Mro protein_coding Interval_39561 chr12 90704864 90705216 + 0 NA Intergenic Intergenic -33179 ENSMUSG00000097157.2 ENSMUSG00000097157 ENSMUST00000220857 Gm26512 bidirectional_promoter_lncRNA Interval_58247 chr15 31338370 31339296 + 0 NA intron (ENSMUSG00000022237.17, intron 1 of 3) protein_coding-intron (ENSMUSG00000022237.17, intron 1 of 2) -29529 ENSMUSG00000115406.1 ENSMUSG00000115406 ENSMUST00000227460 Gm49300 TEC Interval_63006 chr15 98621368 98621626 + 0 NA Intergenic Intergenic -10308 ENSMUSG00000003352.14 ENSMUSG00000003352 ENSMUST00000230064 Cacnb3 protein_coding Interval_60787 chr15 76754240 76754825 + 0 NA intron (ENSMUSG00000033697.16, intron 2 of 10) protein_coding-intron (ENSMUSG00000033697.16, intron 2 of 11) -30687 ENSMUSG00000116138.1 ENSMUSG00000116138 ENSMUST00000229507 C030006K11Rik protein_coding Interval_147582 chr7 68534240 68534567 + 0 NA Intergenic Intergenic 64451 ENSMUSG00000109375.1 ENSMUSG00000109375 ENSMUST00000208980 Gm44887 processed_pseudogene Interval_112816 chr4 45252401 45253244 + 0 NA intron (ENSMUSG00000035615.12, intron 5 of 6) protein_coding-intron (ENSMUSG00000035615.12, intron 5 of 15) -8832 ENSMUSG00000086284.1 ENSMUSG00000086284 ENSMUST00000134640 Frmpd1os antisense Interval_33465 chr11 116687772 116688485 + 0 NA intron (ENSMUSG00000057286.6, intron 2 of 8) protein_coding-intron (ENSMUSG00000057286.6, intron 2 of 8) 6481 ENSMUSG00000057286.6 ENSMUSG00000057286 ENSMUST00000145441 St6galnac2 protein_coding Interval_23266 chr11 21023196 21024277 + 0 NA Intergenic Intergenic -67555 ENSMUSG00000020134.13 ENSMUSG00000020134 ENSMUST00000101477 Peli1 protein_coding Interval_105568 chr3 87803525 87804494 + 0 NA exon (ENSMUSG00000005640.11, exon 6 of 22) protein_coding-exon (ENSMUSG00000005640.11, exon 6 of 22) 2066 ENSMUSG00000005640.11 ENSMUSG00000005640 ENSMUST00000166866 Insrr protein_coding Interval_93245 chr2 71428628 71428900 + 0 NA intron (ENSMUSG00000027018.11, intron 8 of 10) protein_coding-intron (ENSMUSG00000027018.11, intron 8 of 10) 8672 ENSMUSG00000027018.11 ENSMUSG00000027018 ENSMUST00000145147 Hat1 protein_coding Interval_7287 chr1 128440954 128441560 + 0 NA Intergenic Intergenic -48783 ENSMUSG00000088196.1 ENSMUSG00000088196 ENSMUST00000157571 Gm23902 snoRNA Interval_169697 chr9 100466263 100467184 + 0 NA exon (ENSMUSG00000044244.18, exon 1 of 3) protein_coding-exon (ENSMUSG00000044244.18, exon 1 of 3) 3886 ENSMUSG00000044244.18 ENSMUSG00000044244 ENSMUST00000122880 Il20rb protein_coding Interval_24676 chr11 35829021 35829200 + 0 NA intron (ENSMUSG00000018848.4, intron 2 of 14) protein_coding-intron (ENSMUSG00000018848.4, intron 2 of 14) -3977 ENSMUSG00000018848.4 ENSMUSG00000018848 ENSMUST00000137815 Rars protein_coding Interval_38382 chr12 78225810 78227533 + 0 NA promoter-TSS (ENSMUSG00000047454.12) protein_coding-promoter-TSS (ENSMUSG00000047454.12) -146 ENSMUSG00000112302.1 ENSMUSG00000112302 ENSMUST00000219034 Gm48226 bidirectional_promoter_lncRNA Interval_255 KZ289068.1 343895 344100 + 0 NA NA NA NA NA Interval_167277 chr9 66980394 66980863 + 0 NA TTS (ENSMUSG00000089450.1) snRNA-TTS (ENSMUSG00000089450.1) 557 ENSMUSG00000089450.1 ENSMUSG00000089450 ENSMUST00000158825 Gm24225 snRNA Interval_109953 chr3 152135828 152136504 + 0 NA intron (ENSMUSG00000039131.15, intron 2 of 2) protein_coding-intron (ENSMUSG00000039131.15, intron 2 of 5) 10622 ENSMUSG00000039131.15 ENSMUSG00000039131 ENSMUST00000133102 Gipc2 protein_coding Interval_162948 chr9 13668906 13670454 + 0 NA intron (ENSMUSG00000031925.17, intron 1 of 3) protein_coding-intron (ENSMUSG00000031925.17, intron 1 of 3) 7220 ENSMUSG00000031925.17 ENSMUSG00000031925 ENSMUST00000177755 Maml2 protein_coding Interval_21401 chr10 128376444 128377911 + 0 NA promoter-TSS (ENSMUSG00000014498.9) protein_coding-promoter-TSS (ENSMUSG00000014498.9) 62 ENSMUSG00000014498.9 ENSMUSG00000014498 ENSMUST00000166577 Ankrd52 protein_coding Interval_49794 chr13 115358213 115358436 + 0 NA Intergenic Intergenic 76123 ENSMUSG00000114471.1 ENSMUSG00000114471 ENSMUST00000224035 Gm47891 processed_pseudogene Interval_154490 chr8 18637272 18637463 + 0 NA intron (ENSMUSG00000039842.15, intron 8 of 11) protein_coding-intron (ENSMUSG00000039842.15, intron 8 of 13) 19622 ENSMUSG00000090334.1 ENSMUSG00000090334 ENSMUST00000164712 Gm17149 processed_pseudogene Interval_3486 chr1 58802446 58802640 + 0 NA promoter-TSS (ENSMUSG00000026029.14) protein_coding-promoter-TSS (ENSMUSG00000026029.14) 4760 ENSMUSG00000102719.1 ENSMUSG00000102719 ENSMUST00000194726 Gm37760 TEC Interval_122857 chr5 26214283 26214595 + 0 NA Intergenic Intergenic -43252 ENSMUSG00000059645.6 ENSMUSG00000059645 ENSMUST00000074148 Gm7361 protein_coding Interval_92112 chr2 53367018 53367803 + 0 NA Intergenic Intergenic 31077 ENSMUSG00000082472.1 ENSMUSG00000082472 ENSMUST00000118477 Gm13501 processed_pseudogene Interval_138802 chr6 92024558 92025364 + 0 NA intron (ENSMUSG00000034037.14, intron 2 of 19) protein_coding-intron (ENSMUSG00000034037.14, intron 3 of 20) -8844 ENSMUSG00000087317.1 ENSMUSG00000087317 ENSMUST00000144105 4930466I24Rik antisense Interval_54478 chr14 70135121 70136062 + 0 NA intron (ENSMUSG00000022089.9, intron 8 of 8) protein_coding-intron (ENSMUSG00000022089.9, intron 8 of 8) 5505 ENSMUSG00000033712.6 ENSMUSG00000033712 ENSMUST00000035612 Ccar2 protein_coding Interval_156650 chr8 56442788 56443295 + 0 NA Intergenic Intergenic -10474 ENSMUSG00000110309.1 ENSMUSG00000110309 ENSMUST00000209962 Gm7419 processed_pseudogene Interval_134979 chr6 34283436 34284357 + 0 NA Intergenic Intergenic -6369 ENSMUSG00000086762.1 ENSMUSG00000086762 ENSMUST00000138275 Gm14546 antisense Interval_13856 chr10 23973054 23973485 + 0 NA Intergenic Intergenic 2563 ENSMUSG00000069706.3 ENSMUSG00000069706 ENSMUST00000092659 Taar5 protein_coding Interval_4960 chr1 82973653 82974608 + 0 NA Intergenic Intergenic 13844 ENSMUSG00000114011.1 ENSMUSG00000114011 ENSMUST00000223536 Gm47955 protein_coding Interval_9016 chr1 153098603 153099138 + 0 NA intron (ENSMUSG00000042751.14, intron 8 of 11) protein_coding-intron (ENSMUSG00000042751.14, intron 8 of 10) 5390 ENSMUSG00000042751.14 ENSMUSG00000042751 ENSMUST00000190960 Nmnat2 protein_coding Interval_159491 chr8 95054112 95055494 + 0 NA promoter-TSS (ENSMUSG00000031786.7) protein_coding-promoter-TSS (ENSMUSG00000031786.7) -308 ENSMUSG00000031786.7 ENSMUSG00000031786 ENSMUST00000212980 Drc7 protein_coding Interval_110818 chr4 8714997 8715379 + 0 NA intron (ENSMUSG00000041235.12, intron 1 of 1) protein_coding-intron (ENSMUSG00000041235.12, intron 1 of 37) -41606 ENSMUSG00000082122.1 ENSMUSG00000082122 ENSMUST00000120923 Gm11809 processed_pseudogene Interval_39023 chr12 84533265 84535071 + 0 NA intron (ENSMUSG00000085793.2, intron 1 of 1) protein_coding-intron (ENSMUSG00000085793.2, intron 4 of 4) 4124 ENSMUSG00000085793.2 ENSMUSG00000085793 ENSMUST00000222741 Lin52 protein_coding Interval_149122 chr7 94241029 94241533 + 0 NA intron (ENSMUSG00000108532.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000108532.1, intron 1 of 1) 44071 ENSMUSG00000096033.2 ENSMUSG00000096033 ENSMUST00000071770 Gm5899 processed_pseudogene Interval_50152 chr14 8309544 8310142 + 0 NA promoter-TSS (ENSMUSG00000021750.16) protein_coding-promoter-TSS (ENSMUSG00000021750.16) -48 ENSMUSG00000021750.16 ENSMUSG00000021750 ENSMUST00000137133 Fam107a protein_coding Interval_166088 chr9 56527359 56527945 + 0 NA Intergenic Intergenic -12253 ENSMUSG00000110821.1 ENSMUSG00000110821 ENSMUST00000213911 Gm47176 lincRNA Interval_19665 chr10 107493367 107495293 + 0 NA exon (ENSMUSG00000035923.4, exon 1 of 3) protein_coding-exon (ENSMUSG00000035923.4, exon 1 of 3) 407 ENSMUSG00000035923.4 ENSMUSG00000035923 ENSMUST00000044210 Myf6 protein_coding Interval_144304 chr7 24393024 24393286 + 0 NA Intergenic Intergenic 10101 ENSMUSG00000054342.8 ENSMUSG00000054342 ENSMUST00000206910 Kcnn4 protein_coding Interval_49574 chr13 113074104 113074369 + 0 NA intron (ENSMUSG00000078926.8, intron 6 of 10) protein_coding-intron (ENSMUSG00000078926.8, intron 6 of 11) 4911 ENSMUSG00000116554.1 ENSMUSG00000116554 ENSMUST00000232584 4930563N14Rik antisense Interval_140063 chr6 113724435 113725050 + 0 NA promoter-TSS (ENSMUSG00000108137.1) lincRNA-promoter-TSS (ENSMUSG00000108137.1) -481 ENSMUSG00000108137.1 ENSMUSG00000108137 ENSMUST00000203364 Gm44053 lincRNA Interval_173422 chrX 93249338 93249644 + 0 NA Intergenic Intergenic -1983 ENSMUSG00000065266.1 ENSMUSG00000065266 ENSMUST00000083332 Gm23454 snoRNA Interval_31946 chr11 104006876 104007778 + 0 NA Intergenic Intergenic 27738 ENSMUSG00000062421.13 ENSMUSG00000062421 ENSMUST00000154089 Arf2 protein_coding Interval_138911 chr6 93415943 93416811 + 0 NA Intergenic Intergenic 39180 ENSMUSG00000107848.1 ENSMUSG00000107848 ENSMUST00000203106 Gm44181 TEC Interval_12101 chr1 189744863 189745234 + 0 NA intron (ENSMUSG00000026604.17, intron 1 of 9) protein_coding-intron (ENSMUSG00000026604.17, intron 1 of 18) 59720 ENSMUSG00000103374.1 ENSMUSG00000103374 ENSMUST00000193510 Gm37239 processed_pseudogene Interval_141848 chr6 134904691 134904921 + 0 NA Intergenic Intergenic 6845 ENSMUSG00000100876.1 ENSMUSG00000100876 ENSMUST00000189942 2810454H06Rik antisense Interval_103831 chr3 53490448 53490870 + 0 NA intron (ENSMUSG00000027744.4, intron 1 of 2) protein_coding-intron (ENSMUSG00000027744.4, intron 1 of 6) 2006 ENSMUSG00000027744.4 ENSMUSG00000027744 ENSMUST00000029307 Stoml3 protein_coding Interval_32316 chr11 106865958 106866197 + 0 NA intron (ENSMUSG00000018363.16, intron 5 of 19) protein_coding-intron (ENSMUSG00000018363.16, intron 4 of 18) 48243 ENSMUSG00000018372.13 ENSMUSG00000018372 ENSMUST00000124898 Cep95 protein_coding Interval_117391 chr4 123411356 123412673 + 0 NA exon (ENSMUSG00000028649.21, exon 1 of 6) protein_coding-exon (ENSMUSG00000028649.21, exon 1 of 6) -23603 ENSMUSG00000081528.1 ENSMUSG00000081528 ENSMUST00000121747 Gm12924 processed_pseudogene Interval_65638 chr16 24475238 24475695 + 0 NA intron (ENSMUSG00000033306.15, intron 3 of 6) protein_coding-intron (ENSMUSG00000033306.15, intron 3 of 12) -53928 ENSMUSG00000116875.1 ENSMUSG00000116875 ENSMUST00000231737 Morf4l1-ps1 processed_pseudogene Interval_170018 chr9 103686986 103687807 + 0 NA intron (ENSMUSG00000042757.16, intron 2 of 3) protein_coding-intron (ENSMUSG00000042757.16, intron 1 of 4) 74433 ENSMUSG00000042757.16 ENSMUSG00000042757 ENSMUST00000186455 Tmem108 protein_coding Interval_120135 chr4 142882602 142883113 + 0 NA intron (ENSMUSG00000110067.2, intron 1 of 1) protein_coding-intron (ENSMUSG00000110067.2, intron 1 of 2) 92049 ENSMUSG00000103678.1 ENSMUSG00000103678 ENSMUST00000193751 Gm37624 TEC Interval_2672 chr1 43163347 43164492 + 0 NA promoter-TSS (ENSMUSG00000008136.14) protein_coding-promoter-TSS (ENSMUSG00000008136.14) -25237 ENSMUSG00000094497.1 ENSMUSG00000094497 ENSMUST00000178557 Gm8210 processed_pseudogene Interval_50239 chr14 11039070 11040766 + 0 NA intron (ENSMUSG00000060579.13, intron 1 of 7) protein_coding-intron (ENSMUSG00000060579.13, intron 2 of 9) -122272 ENSMUSG00000089785.2 ENSMUSG00000089785 ENSMUST00000162199 Slc25a5-ps transcribed_processed_pseudogene Interval_87568 chr19 53490929 53491916 + 0 NA Intergenic Intergenic 7928 ENSMUSG00000118378.1 ENSMUSG00000118378 ENSMUST00000235451 Gm50393 TEC Interval_12573 chr10 3420614 3420813 + 0 NA intron (ENSMUSG00000040653.6, intron 1 of 1) protein_coding-intron (ENSMUSG00000040653.6, intron 1 of 3) -4310 ENSMUSG00000080655.1 ENSMUSG00000080655 ENSMUST00000117005 Gm24482 miRNA Interval_61577 chr15 82577115 82577460 + 0 NA Intergenic Intergenic -11976 ENSMUSG00000116319.1 ENSMUSG00000116319 ENSMUST00000229062 Gm49429 TEC Interval_130540 chr5 128678633 128680190 + 0 NA Intergenic Intergenic -23113 ENSMUSG00000029423.10 ENSMUSG00000029423 ENSMUST00000195959 Piwil1 protein_coding Interval_166985 chr9 64306522 64307331 + 0 NA TTS (ENSMUSG00000032396.17) protein_coding-TTS (ENSMUSG00000032396.17) 10995 ENSMUSG00000088254.1 ENSMUSG00000088254 ENSMUST00000157629 Gm24289 scaRNA Interval_136207 chr6 52035908 52036580 + 0 NA Intergenic Intergenic 23643 ENSMUSG00000108244.1 ENSMUSG00000108244 ENSMUST00000203453 Gm44077 lincRNA Interval_57380 chr15 10429380 10430097 + 0 NA Intergenic Intergenic 22172 ENSMUSG00000044224.16 ENSMUSG00000044224 ENSMUST00000147224 Dnajc21 protein_coding Interval_49960 chr13 118948472 118948697 + 0 NA Intergenic Intergenic -90170 ENSMUSG00000114868.1 ENSMUSG00000114868 ENSMUST00000224309 Gm47335 processed_pseudogene Interval_21230 chr10 127331426 127333655 + 0 NA exon (ENSMUSG00000025407.7, exon 12 of 13) protein_coding-exon (ENSMUSG00000025407.7, exon 12 of 13) 149 ENSMUSG00000112426.1 ENSMUSG00000112426 ENSMUST00000219640 Gm47200 antisense Interval_53967 chr14 63891358 63892284 + 0 NA intron (ENSMUSG00000021958.5, intron 6 of 6) protein_coding-intron (ENSMUSG00000021958.5, intron 6 of 6) -7948 ENSMUSG00000021958.5 ENSMUSG00000021958 ENSMUST00000225564 Pinx1 protein_coding Interval_140673 chr6 120463066 120464100 + 0 NA intron (ENSMUSG00000002897.5, intron 1 of 10) protein_coding-intron (ENSMUSG00000002897.5, intron 1 of 12) 336 ENSMUSG00000002897.5 ENSMUSG00000002897 ENSMUST00000204078 Il17ra protein_coding Interval_52612 chr14 47911051 47911290 + 0 NA intron (ENSMUSG00000115609.1, intron 2 of 3) lincRNA-intron (ENSMUSG00000115609.1, intron 3 of 3) 12319 ENSMUSG00000115609.1 ENSMUSG00000115609 ENSMUST00000226469 4930447J18Rik lincRNA Interval_70556 chr17 11988019 11988977 + 0 NA intron (ENSMUSG00000023826.16, intron 8 of 10) protein_coding-intron (ENSMUSG00000023826.16, intron 9 of 11) -130831 ENSMUSG00000023827.8 ENSMUSG00000023827 ENSMUST00000167905 Agpat4 protein_coding Interval_66421 chr16 33760438 33761233 + 0 NA TTS (ENSMUSG00000075254.12) protein_coding-TTS (ENSMUSG00000075254.12) -33202 ENSMUSG00000022824.12 ENSMUSG00000022824 ENSMUST00000023520 Muc13 protein_coding Interval_51713 chr14 31583295 31583515 + 0 NA intron (ENSMUSG00000057606.14, intron 1 of 2) protein_coding-intron (ENSMUSG00000057606.14, intron 1 of 3) -25265 ENSMUSG00000057606.14 ENSMUSG00000057606 ENSMUST00000129238 Colq protein_coding Interval_61023 chr15 78826298 78827000 + 0 NA Intergenic Intergenic 5839 ENSMUSG00000116499.1 ENSMUSG00000116499 ENSMUST00000230007 Gm7318 processed_pseudogene Interval_135545 chr6 40324800 40325846 + 0 NA promoter-TSS (ENSMUSG00000029916.11) protein_coding-promoter-TSS (ENSMUSG00000029916.11) -185 ENSMUSG00000029916.11 ENSMUSG00000029916 ENSMUST00000201751 Agk protein_coding Interval_41480 chr12 114833025 114833260 + 0 NA Intergenic Intergenic 2514 ENSMUSG00000102656.1 ENSMUSG00000102656 ENSMUST00000195149 Ighv1-32 IG_V_pseudogene Interval_82344 chr18 71502860 71504165 + 0 NA intron (ENSMUSG00000060534.16, intron 12 of 28) protein_coding-intron (ENSMUSG00000060534.16, intron 12 of 28) -595861 ENSMUSG00000118271.1 ENSMUSG00000118271 ENSMUST00000236972 Gm50262 processed_pseudogene Interval_146325 chr7 45346881 45347117 + 0 NA intron (ENSMUSG00000003863.18, intron 20 of 29) protein_coding-intron (ENSMUSG00000003863.18, intron 20 of 29) -5839 ENSMUSG00000003863.18 ENSMUSG00000003863 ENSMUST00000209424 Ppfia3 protein_coding Interval_22146 chr11 6603796 6606296 + 0 NA intron (ENSMUSG00000041073.10, intron 1 of 7) protein_coding-intron (ENSMUSG00000041073.10, intron 1 of 7) -5108 ENSMUSG00000041073.10 ENSMUSG00000041073 ENSMUST00000177391 Nacad protein_coding Interval_68131 chr16 65533268 65533960 + 0 NA intron (ENSMUSG00000004842.18, intron 4 of 4) protein_coding-intron (ENSMUSG00000004842.18, intron 5 of 6) -7443 ENSMUSG00000116699.1 ENSMUSG00000116699 ENSMUST00000232553 Gm49631 lincRNA Interval_38886 chr12 83614810 83615066 + 0 NA Intergenic Intergenic 6131 ENSMUSG00000113431.1 ENSMUSG00000113431 ENSMUST00000221586 Gm6722 processed_pseudogene Interval_120340 chr4 148001177 148002012 + 0 NA intron (ENSMUSG00000086806.1, intron 2 of 2) protein_coding-intron (ENSMUSG00000041616.9, intron 2 of 2) 872 ENSMUSG00000041616.9 ENSMUSG00000041616 ENSMUST00000103230 Nppa protein_coding Interval_14520 chr10 34794712 34795000 + 0 NA Intergenic Intergenic -86552 ENSMUSG00000111042.1 ENSMUSG00000111042 ENSMUST00000215855 Gm18252 transcribed_processed_pseudogene Interval_64189 chr16 8935845 8937105 + 0 NA Intergenic Intergenic -8438 ENSMUSG00000116525.1 ENSMUSG00000116525 ENSMUST00000230927 Gm30371 lincRNA Interval_1514 chr1 24535905 24536182 + 0 NA intron (ENSMUSG00000026141.13, intron 5 of 50) protein_coding-intron (ENSMUSG00000026141.13, intron 5 of 47) 12934 ENSMUSG00000077463.1 ENSMUSG00000077463 ENSMUST00000104275 Gm26418 snoRNA Interval_162357 chr8 127371742 127372047 + 0 NA intron (ENSMUSG00000025812.18, intron 1 of 1) protein_coding-intron (ENSMUSG00000025812.18, intron 9 of 23) -189541 ENSMUSG00000090074.1 ENSMUSG00000090074 ENSMUST00000161478 Gm6921 processed_pseudogene Interval_136457 chr6 54631385 54631653 + 0 NA intron (ENSMUSG00000005225.15, intron 12 of 13) protein_coding-intron (ENSMUSG00000005225.15, intron 12 of 13) 36408 ENSMUSG00000005225.15 ENSMUSG00000005225 ENSMUST00000101385 Plekha8 protein_coding Interval_93222 chr2 71285336 71286439 + 0 NA intron (ENSMUSG00000027010.16, intron 12 of 16) protein_coding-intron (ENSMUSG00000027010.16, intron 3 of 7) -33896 ENSMUSG00000082190.1 ENSMUSG00000082190 ENSMUST00000117993 Gm13641 processed_pseudogene Interval_154203 chr8 13411522 13412130 + 0 NA intron (ENSMUSG00000031450.8, intron 3 of 5) protein_coding-intron (ENSMUSG00000031450.8, intron 4 of 6) 6720 ENSMUSG00000031450.8 ENSMUSG00000031450 ENSMUST00000211027 Grk1 protein_coding Interval_62515 chr15 93935009 93935804 + 0 NA Intergenic Intergenic -8295 ENSMUSG00000116360.1 ENSMUSG00000116360 ENSMUST00000230109 9430014N10Rik lincRNA Interval_91522 chr2 40758037 40758777 + 0 NA intron (ENSMUSG00000049252.17, intron 66 of 90) protein_coding-intron (ENSMUSG00000049252.17, intron 66 of 90) -159864 ENSMUSG00000098953.1 ENSMUSG00000098953 ENSMUST00000184511 Gm27348 misc_RNA Interval_97277 chr2 132864036 132864326 + 0 NA TTS (ENSMUSG00000027357.16) protein_coding-TTS (ENSMUSG00000027357.16) 16443 ENSMUSG00000027357.16 ENSMUSG00000027357 ENSMUST00000154160 Crls1 protein_coding Interval_133502 chr6 5956357 5956566 + 0 NA intron (ENSMUSG00000029757.16, intron 10 of 16) protein_coding-intron (ENSMUSG00000029757.16, intron 9 of 15) 20932 ENSMUSG00000085416.1 ENSMUSG00000085416 ENSMUST00000130004 1700019G24Rik antisense Interval_145060 chr7 29806550 29807537 + 0 NA Intergenic Intergenic -7247 ENSMUSG00000109565.1 ENSMUSG00000109565 ENSMUST00000208224 Gm6579 unprocessed_pseudogene Interval_59104 chr15 43912279 43912973 + 0 NA Intergenic Intergenic -42590 ENSMUSG00000054409.5 ENSMUSG00000054409 ENSMUST00000067469 Tmem74 protein_coding Interval_53553 chr14 59075571 59076722 + 0 NA Intergenic Intergenic 10972 ENSMUSG00000114289.1 ENSMUSG00000114289 ENSMUST00000223800 Gm48453 lincRNA Interval_83587 chr18 90319109 90319318 + 0 NA Intergenic Intergenic 3667 ENSMUSG00000117726.1 ENSMUSG00000117726 ENSMUST00000237935 Gm7674 processed_pseudogene Interval_135582 chr6 40846902 40847354 + 0 NA intron (ENSMUSG00000102802.3, intron 36 of 46) protein_coding-intron (ENSMUSG00000102802.3, intron 36 of 46) 40366 ENSMUSG00000029885.3 ENSMUSG00000029885 ENSMUST00000031937 Moxd2 protein_coding Interval_119302 chr4 136739318 136739694 + 0 NA intron (ENSMUSG00000028664.14, intron 3 of 15) protein_coding-intron (ENSMUSG00000028664.14, intron 3 of 15) -45466 ENSMUSG00000028664.14 ENSMUSG00000028664 ENSMUST00000144573 Ephb2 protein_coding Interval_144705 chr7 27644646 27644947 + 0 NA intron (ENSMUSG00000118518.1, intron 1 of 2) unitary_pseudogene-intron (ENSMUSG00000118518.1, intron 1 of 2) 1698 ENSMUSG00000118518.1 ENSMUSG00000118518 ENSMUST00000239103 AC074312.1 unitary_pseudogene Interval_144253 chr7 24019048 24020145 + 0 NA Intergenic Intergenic 17905 ENSMUSG00000092456.2 ENSMUSG00000092456 ENSMUST00000173571 V1rd19 protein_coding Interval_167402 chr9 68756450 68756829 + 0 NA intron (ENSMUSG00000032238.17, intron 1 of 5) protein_coding-intron (ENSMUSG00000032238.17, intron 1 of 10) 102748 ENSMUSG00000032238.17 ENSMUSG00000032238 ENSMUST00000113624 Rora protein_coding Interval_156893 chr8 61506917 61507676 + 0 NA TTS (ENSMUSG00000031641.14) protein_coding-TTS (ENSMUSG00000031641.14) 8604 ENSMUSG00000058056.16 ENSMUSG00000058056 ENSMUST00000123523 Palld protein_coding Interval_156975 chr8 63465700 63466047 + 0 NA Intergenic Intergenic -57047 ENSMUSG00000110300.1 ENSMUSG00000110300 ENSMUST00000209593 Gm18645 processed_pseudogene Interval_132999 chr5 149194097 149194310 + 0 NA TTS (ENSMUSG00000041264.16) protein_coding-TTS (ENSMUSG00000041264.16) 5344 ENSMUSG00000041264.16 ENSMUSG00000041264 ENSMUST00000150921 Uspl1 protein_coding Interval_114288 chr4 70691474 70691833 + 0 NA Intergenic Intergenic -156725 ENSMUSG00000039270.9 ENSMUSG00000039270 ENSMUST00000037881 Megf9 protein_coding Interval_171369 chr9 117113426 117114023 + 0 NA intron (ENSMUSG00000039607.17, intron 1 of 13) protein_coding-intron (ENSMUSG00000039607.17, intron 1 of 12) 48197 ENSMUSG00000092516.1 ENSMUSG00000092516 ENSMUST00000174520 Gm20397 processed_pseudogene Interval_44215 chr13 42300377 42302747 + 0 NA promoter-TSS (ENSMUSG00000021367.8) protein_coding-promoter-TSS (ENSMUSG00000021367.8) 86 ENSMUSG00000021367.8 ENSMUSG00000021367 ENSMUST00000021796 Edn1 protein_coding Interval_98990 chr2 156511795 156512258 + 0 NA intron (ENSMUSG00000027624.20, intron 14 of 24) protein_coding-intron (ENSMUSG00000027624.20, intron 13 of 21) 5632 ENSMUSG00000027624.20 ENSMUSG00000027624 ENSMUST00000137067 Epb41l1 protein_coding Interval_64877 chr16 16911573 16912855 + 0 NA promoter-TSS (ENSMUSG00000116823.1) antisense-promoter-TSS (ENSMUSG00000116823.1) -498 ENSMUSG00000116823.1 ENSMUSG00000116823 ENSMUST00000231277 Gm49595 antisense Interval_98622 chr2 153609685 153610027 + 0 NA Intergenic Intergenic 22875 ENSMUSG00000056941.17 ENSMUSG00000056941 ENSMUST00000109782 Commd7 protein_coding Interval_134956 chr6 34103194 34103896 + 0 NA exon (ENSMUSG00000056215.13, exon 16 of 16) protein_coding-exon (ENSMUSG00000056215.13, exon 16 of 16) -48384 ENSMUSG00000087356.1 ENSMUSG00000087356 ENSMUST00000126498 Gm13856 antisense Interval_106599 chr3 97609284 97610675 + 0 NA promoter-TSS (ENSMUSG00000105004.1) TEC-promoter-TSS (ENSMUSG00000105004.1) 47 ENSMUSG00000105004.1 ENSMUSG00000105004 ENSMUST00000198613 Gm43075 TEC Interval_28449 chr11 75966146 75967503 + 0 NA Intergenic Intergenic -28395 ENSMUSG00000020847.15 ENSMUSG00000020847 ENSMUST00000152035 Rph3al protein_coding Interval_55645 chr14 97606025 97606281 + 0 NA Intergenic Intergenic 60138 ENSMUSG00000115598.1 ENSMUSG00000115598 ENSMUST00000227015 Gm9290 processed_pseudogene Interval_168653 chr9 85459014 85459958 + 0 NA Intergenic Intergenic -13248 ENSMUSG00000065274.1 ENSMUSG00000065274 ENSMUST00000083340 Gm25125 snoRNA Interval_132957 chr5 148952592 148952999 + 0 NA TTS (ENSMUSG00000108207.2) processed_transcript-TTS (ENSMUSG00000108207.2) 2545 ENSMUSG00000079069.1 ENSMUSG00000079069 ENSMUST00000110507 8430423G03Rik lincRNA Interval_48845 chr13 103988204 103989191 + 0 NA Intergenic Intergenic -10367 ENSMUSG00000114637.1 ENSMUSG00000114637 ENSMUST00000224348 Gm47851 lincRNA Interval_38481 chr12 79341132 79342112 + 0 NA intron (ENSMUSG00000059060.15, intron 1 of 2) protein_coding-intron (ENSMUSG00000059060.15, intron 7 of 7) 14269 ENSMUSG00000059060.15 ENSMUSG00000059060 ENSMUST00000221257 Rad51b protein_coding Interval_154281 chr8 14001560 14002498 + 0 NA intron (ENSMUSG00000110058.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000110058.1, intron 1 of 2) 3089 ENSMUSG00000110058.1 ENSMUSG00000110058 ENSMUST00000210969 Gm5907 lincRNA Interval_156145 chr8 45109968 45110397 + 0 NA promoter-TSS (ENSMUSG00000110260.1) lincRNA-promoter-TSS (ENSMUSG00000110260.1) 25015 ENSMUSG00000054764.9 ENSMUSG00000054764 ENSMUST00000209488 Mtnr1a protein_coding Interval_155167 chr8 27174073 27175781 + 0 NA promoter-TSS (ENSMUSG00000031488.14) protein_coding-promoter-TSS (ENSMUSG00000031488.14) -286 ENSMUSG00000031488.14 ENSMUSG00000031488 ENSMUST00000211646 Rab11fip1 protein_coding Interval_174232 chrX 140457940 140458399 + 0 NA intron (ENSMUSG00000031432.3, intron 1 of 1) protein_coding-intron (ENSMUSG00000031432.3, intron 1 of 6) 1556 ENSMUSG00000031432.3 ENSMUSG00000031432 ENSMUST00000033809 Prps1 protein_coding Interval_79240 chr18 26863407 26863617 + 0 NA Intergenic Intergenic 54585 ENSMUSG00000117456.1 ENSMUSG00000117456 ENSMUST00000234570 Gm49976 lincRNA Interval_41674 chr12 117634901 117635413 + 0 NA intron (ENSMUSG00000041992.9, intron 7 of 8) protein_coding-intron (ENSMUSG00000041992.9, intron 9 of 27) 33118 ENSMUSG00000113575.1 ENSMUSG00000113575 ENSMUST00000223270 A930023M06Rik sense_intronic Interval_34839 chr12 12420592 12421643 + 0 NA Intergenic Intergenic -28502 ENSMUSG00000114136.1 ENSMUSG00000114136 ENSMUST00000220545 4921511I17Rik antisense Interval_33302 chr11 115799885 115800988 + 0 NA exon (ENSMUSG00000034471.12, exon 19 of 20) protein_coding-exon (ENSMUSG00000034471.12, exon 19 of 20) 4612 ENSMUSG00000093539.1 ENSMUSG00000093539 ENSMUST00000175989 Mir5621 miRNA Interval_126167 chr5 81200835 81201117 + 0 NA intron (ENSMUSG00000037605.16, intron 3 of 10) protein_coding-intron (ENSMUSG00000037605.16, intron 3 of 26) -48273 ENSMUSG00000107226.1 ENSMUSG00000107226 ENSMUST00000201153 Gm43594 TEC Interval_167314 chr9 67249950 67251327 + 0 NA exon (ENSMUSG00000052698.15, exon 51 of 58) protein_coding-exon (ENSMUSG00000052698.15, exon 51 of 58) -13912 ENSMUSG00000076379.2 ENSMUSG00000076379 ENSMUST00000102424 Mir190a miRNA Interval_136020 chr6 49820998 49823444 + 0 NA promoter-TSS (ENSMUSG00000029819.6) protein_coding-promoter-TSS (ENSMUSG00000029819.6) -489 ENSMUSG00000029819.6 ENSMUSG00000029819 ENSMUST00000031843 Npy protein_coding Interval_97568 chr2 139952051 139952308 + 0 NA intron (ENSMUSG00000039033.11, intron 8 of 13) protein_coding-intron (ENSMUSG00000039033.11, intron 8 of 13) 88882 ENSMUSG00000084207.1 ENSMUSG00000084207 ENSMUST00000120773 Gm14070 processed_pseudogene Interval_118173 chr4 129352779 129353362 + 0 NA TTS (ENSMUSG00000028807.2) protein_coding-TTS (ENSMUSG00000028807.2) 17375 ENSMUSG00000057572.15 ENSMUSG00000057572 ENSMUST00000140272 Zbtb8os protein_coding Interval_52488 chr14 46920339 46920757 + 0 NA intron (ENSMUSG00000021838.17, intron 3 of 12) protein_coding-intron (ENSMUSG00000021838.17, intron 2 of 12) 27028 ENSMUSG00000114996.1 ENSMUSG00000114996 ENSMUST00000228844 Gm48958 TEC Interval_97718 chr2 143234212 143234441 + 0 NA Intergenic Intergenic -82696 ENSMUSG00000083047.1 ENSMUSG00000083047 ENSMUST00000118582 Gm14082 processed_pseudogene Interval_8263 chr1 136821324 136821681 + 0 NA Intergenic Intergenic -22543 ENSMUSG00000104261.1 ENSMUSG00000104261 ENSMUST00000195232 Gm17781 processed_pseudogene Interval_86386 chr19 39889779 39890704 + 0 NA Intergenic Intergenic -3442 ENSMUSG00000092008.2 ENSMUSG00000092008 ENSMUST00000168838 Cyp2c69 protein_coding Interval_65554 chr16 23272633 23272968 + 0 NA intron (ENSMUSG00000022885.16, intron 1 of 2) protein_coding-intron (ENSMUSG00000022885.16, intron 2 of 7) 46779 ENSMUSG00000022885.16 ENSMUSG00000022885 ENSMUST00000115335 St6gal1 protein_coding Interval_133950 chr6 16361848 16362497 + 0 NA Intergenic Intergenic 107778 ENSMUSG00000108295.2 ENSMUSG00000108295 ENSMUST00000203052 Gm36406 processed_transcript Interval_7065 chr1 125165075 125165438 + 0 NA Intergenic Intergenic 32199 ENSMUSG00000099574.1 ENSMUSG00000099574 ENSMUST00000187796 1700121L03Rik lincRNA Interval_32263 chr11 106589892 106590787 + 0 NA intron (ENSMUSG00000040548.16, intron 1 of 1) protein_coding-intron (ENSMUSG00000040548.16, intron 1 of 11) -23229 ENSMUSG00000040548.16 ENSMUSG00000040548 ENSMUST00000153870 Tex2 protein_coding Interval_37467 chr12 69168249 69169187 + 0 NA promoter-TSS (ENSMUSG00000034883.9) protein_coding-promoter-TSS (ENSMUSG00000034883.9) -103 ENSMUSG00000034883.9 ENSMUSG00000034883 ENSMUST00000222382 Lrr1 protein_coding Interval_85100 chr19 22829424 22829617 + 0 NA intron (ENSMUSG00000052387.16, intron 8 of 24) protein_coding-intron (ENSMUSG00000052387.16, intron 8 of 26) 78915 ENSMUSG00000065507.3 ENSMUSG00000065507 ENSMUST00000083573 Mir204 miRNA Interval_13441 chr10 18310972 18311179 + 0 NA Intergenic Intergenic -7910 ENSMUSG00000039835.16 ENSMUSG00000039835 ENSMUST00000100054 Nhsl1 protein_coding Interval_162040 chr8 124652628 124653081 + 0 NA intron (ENSMUSG00000031983.7, intron 1 of 3) protein_coding-intron (ENSMUSG00000031983.7, intron 1 of 3) 10515 ENSMUSG00000031983.7 ENSMUSG00000031983 ENSMUST00000034464 2310022B05Rik protein_coding Interval_113229 chr4 50635984 50636415 + 0 NA Intergenic Intergenic 349453 ENSMUSG00000095394.1 ENSMUSG00000095394 ENSMUST00000104120 Gm25485 snoRNA Interval_141468 chr6 128444860 128446772 + 0 NA intron (ENSMUSG00000059659.7, intron 2 of 4) antisense-intron (ENSMUSG00000059659.7, intron 2 of 2) 2582 ENSMUSG00000107505.1 ENSMUSG00000107505 ENSMUST00000203239 Stambp-ps1 processed_pseudogene Interval_1182 chr1 16680604 16680837 + 0 NA Intergenic Intergenic -7331 ENSMUSG00000025779.10 ENSMUSG00000025779 ENSMUST00000190366 Ly96 protein_coding Interval_39354 chr12 86878616 86879998 + 0 NA Intergenic Intergenic 5491 ENSMUSG00000034168.7 ENSMUSG00000034168 ENSMUST00000038422 Irf2bpl protein_coding Interval_122489 chr5 23410058 23410902 + 0 NA intron (ENSMUSG00000073147.3, intron 2 of 4) lincRNA-intron (ENSMUSG00000073147.3, intron 1 of 6) 14377 ENSMUSG00000105042.1 ENSMUSG00000105042 ENSMUST00000197390 Gm42509 TEC Interval_84217 chr19 8839029 8839547 + 0 NA promoter-TSS (ENSMUSG00000071658.5) protein_coding-promoter-TSS (ENSMUSG00000071658.5) -94 ENSMUSG00000071658.5 ENSMUSG00000071658 ENSMUST00000096259 Gng3 protein_coding Interval_161928 chr8 123824327 123825023 + 0 NA intron (ENSMUSG00000019478.16, intron 2 of 7) protein_coding-intron (ENSMUSG00000019478.16, intron 2 of 6) -2654 ENSMUSG00000019478.16 ENSMUSG00000019478 ENSMUST00000212846 Rab4a protein_coding Interval_129625 chr5 121408170 121408429 + 0 NA exon (ENSMUSG00000042719.17, exon 3 of 24) protein_coding-exon (ENSMUSG00000042719.17, exon 3 of 24) 5641 ENSMUSG00000106115.1 ENSMUSG00000106115 ENSMUST00000198012 Gm43420 TEC Interval_121009 chr4 152194481 152197020 + 0 NA intron (ENSMUSG00000028937.14, intron 1 of 8) protein_coding-intron (ENSMUSG00000028937.14, intron 1 of 8) 6392 ENSMUSG00000098385.1 ENSMUSG00000098385 ENSMUST00000184331 Gm27500 misc_RNA Interval_31032 chr11 97805908 97806781 + 0 NA promoter-TSS (ENSMUSG00000038366.15) protein_coding-promoter-TSS (ENSMUSG00000038366.15) -8904 ENSMUSG00000038366.15 ENSMUSG00000038366 ENSMUST00000107568 Lasp1 protein_coding Interval_55803 chr14 100313794 100314506 + 0 NA Intergenic Intergenic 27985 ENSMUSG00000110273.1 ENSMUSG00000110273 ENSMUST00000211525 Gm41231 lincRNA Interval_106508 chr3 96774726 96774919 + 0 NA intron (ENSMUSG00000028098.13, intron 4 of 9) protein_coding-intron (ENSMUSG00000028098.13, intron 3 of 8) -9503 ENSMUSG00000105976.1 ENSMUSG00000105976 ENSMUST00000197286 Gm42782 TEC Interval_149290 chr7 96971007 96972067 + 0 NA intron (ENSMUSG00000018995.12, intron 4 of 5) protein_coding-intron (ENSMUSG00000018995.12, intron 4 of 13) -21397 ENSMUSG00000085560.2 ENSMUSG00000085560 ENSMUST00000137923 C230038L03Rik processed_transcript Interval_79577 chr18 33848804 33849609 + 0 NA intron (ENSMUSG00000024376.7, intron 13 of 23) protein_coding-intron (ENSMUSG00000024376.7, intron 13 of 23) 54042 ENSMUSG00000092819.1 ENSMUSG00000092819 ENSMUST00000175078 Gm23639 snoRNA Interval_27978 chr11 71790439 71790682 + 0 NA TTS (ENSMUSG00000020811.16) protein_coding-TTS (ENSMUSG00000020811.16) 40640 ENSMUSG00000020811.16 ENSMUSG00000020811 ENSMUST00000132095 Wscd1 protein_coding Interval_83751 chr19 4390639 4391226 + 0 NA intron (ENSMUSG00000054611.17, intron 2 of 3) protein_coding-intron (ENSMUSG00000054611.17, intron 2 of 20) -48391 ENSMUSG00000087132.8 ENSMUSG00000087132 ENSMUST00000136632 A930001C03Rik processed_transcript Interval_49077 chr13 107755923 107756440 + 0 NA intron (ENSMUSG00000032846.10, intron 4 of 12) protein_coding-intron (ENSMUSG00000032846.10, intron 5 of 14) 68784 ENSMUSG00000102000.6 ENSMUSG00000102000 ENSMUST00000188490 1700006H21Rik lincRNA Interval_148752 chr7 85433505 85433803 + 0 NA Intergenic Intergenic -17734 ENSMUSG00000091006.3 ENSMUSG00000091006 ENSMUST00000233859 Vmn2r69 protein_coding Interval_56190 chr14 111674408 111677205 + 0 NA promoter-TSS (ENSMUSG00000033214.10) protein_coding-promoter-TSS (ENSMUSG00000033214.10) -43 ENSMUSG00000033214.10 ENSMUSG00000033214 ENSMUST00000227891 Slitrk5 protein_coding Interval_109137 chr3 136606508 136606905 + 0 NA Intergenic Intergenic -94505 ENSMUSG00000106596.1 ENSMUSG00000106596 ENSMUST00000200507 Gm42822 TEC Interval_108073 chr3 121364739 121365205 + 0 NA Intergenic Intergenic 15707 ENSMUSG00000106455.1 ENSMUSG00000106455 ENSMUST00000197896 Gm5711 processed_pseudogene Interval_35975 chr12 33045719 33046035 + 0 NA intron (ENSMUSG00000035860.9, intron 13 of 19) protein_coding-intron (ENSMUSG00000035860.9, intron 13 of 19) 14384 ENSMUSG00000035860.9 ENSMUSG00000035860 ENSMUST00000219065 Cdhr3 protein_coding Interval_145857 chr7 40730415 40730883 + 0 NA Intergenic Intergenic 55912 ENSMUSG00000102004.3 ENSMUSG00000102004 ENSMUST00000207559 4933402C06Rik lincRNA Interval_157995 chr8 77708521 77709045 + 0 NA intron (ENSMUSG00000086451.8, intron 5 of 7) protein_coding-intron (ENSMUSG00000031616.7, intron 2 of 7) -14801 ENSMUSG00000086451.8 ENSMUSG00000086451 ENSMUST00000133139 4933431K23Rik processed_transcript Interval_83279 chr18 83381410 83381754 + 0 NA Intergenic Intergenic -10232 ENSMUSG00000117993.1 ENSMUSG00000117993 ENSMUST00000236713 Gm31503 lincRNA Interval_22132 chr11 6523446 6525587 + 0 NA Intergenic Intergenic -3558 ENSMUSG00000020437.12 ENSMUSG00000020437 ENSMUST00000134489 Myo1g protein_coding Interval_174214 chrX 139832527 139832741 + 0 NA intron (ENSMUSG00000031434.15, intron 2 of 2) protein_coding-intron (ENSMUSG00000031434.15, intron 14 of 15) 3469 ENSMUSG00000031434.15 ENSMUSG00000031434 ENSMUST00000165274 Morc4 protein_coding Interval_47982 chr13 94847567 94848400 + 0 NA Intergenic Intergenic 30249 ENSMUSG00000042043.6 ENSMUSG00000042043 ENSMUST00000220561 Tbca protein_coding Interval_14959 chr10 41466870 41467809 + 0 NA Intergenic Intergenic -9740 ENSMUSG00000019823.17 ENSMUSG00000019823 ENSMUST00000138657 Mical1 protein_coding Interval_6400 chr1 107098417 107098960 + 0 NA Intergenic Intergenic -15182 ENSMUSG00000058017.6 ENSMUSG00000058017 ENSMUST00000023861 Serpinb3d protein_coding Interval_58669 chr15 36907446 36908421 + 0 NA intron (ENSMUSG00000115430.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000115430.1, intron 1 of 1) 23753 ENSMUSG00000115430.1 ENSMUSG00000115430 ENSMUST00000227301 Gm41300 lincRNA Interval_162471 chr8 129210579 129211947 + 0 NA Intergenic Intergenic 22750 ENSMUSG00000071302.10 ENSMUSG00000071302 ENSMUST00000189965 2610044O15Rik8 protein_coding Interval_74719 chr17 56139621 56140798 + 0 NA intron (ENSMUSG00000001227.12, intron 1 of 16) protein_coding-intron (ENSMUSG00000001227.12, intron 1 of 16) -6366 ENSMUSG00000001227.12 ENSMUSG00000001227 ENSMUST00000167545 Sema6b protein_coding Interval_37935 chr12 73135351 73135693 + 0 NA intron (ENSMUSG00000021103.12, intron 1 of 6) protein_coding-intron (ENSMUSG00000021103.12, intron 1 of 7) 10383 ENSMUSG00000077785.1 ENSMUSG00000077785 ENSMUST00000104597 Gm23910 snoRNA Interval_15222 chr10 43462645 43463550 + 0 NA intron (ENSMUSG00000038240.13, intron 7 of 7) protein_coding-intron (ENSMUSG00000038240.13, intron 7 of 7) -6596 ENSMUSG00000094955.2 ENSMUSG00000094955 ENSMUST00000178135 Gm3699 processed_pseudogene Interval_27236 chr11 64554176 64554352 + 0 NA Intergenic Intergenic 36376 ENSMUSG00000080430.1 ENSMUSG00000080430 ENSMUST00000116780 Gm24275 miRNA Interval_12990 chr10 8908620 8908821 + 0 NA intron (ENSMUSG00000111731.1, intron 1 of 3) lincRNA-intron (ENSMUSG00000111731.1, intron 1 of 3) 4739 ENSMUSG00000111731.1 ENSMUSG00000111731 ENSMUST00000215873 Gm48727 lincRNA Interval_5786 chr1 91807749 91807959 + 0 NA intron (ENSMUSG00000007805.4, intron 1 of 1) protein_coding-intron (ENSMUSG00000007805.4, intron 1 of 1) -4917 ENSMUSG00000100980.1 ENSMUSG00000100980 ENSMUST00000187564 Gm29100 antisense Interval_112714 chr4 44347966 44348473 + 0 NA intron (ENSMUSG00000035683.13, intron 14 of 17) protein_coding-intron (ENSMUSG00000035683.13, intron 14 of 17) -34161 ENSMUSG00000081127.1 ENSMUSG00000081127 ENSMUST00000118668 Gm12677 processed_pseudogene Interval_125378 chr5 66554675 66555046 + 0 NA intron (ENSMUSG00000029207.16, intron 1 of 5) protein_coding-intron (ENSMUSG00000029207.16, intron 1 of 17) -20699 ENSMUSG00000106720.1 ENSMUSG00000106720 ENSMUST00000202051 Gm43795 TEC Interval_59821 chr15 59557928 59558427 + 0 NA intron (ENSMUSG00000059586.10, intron 5 of 7) protein_coding-intron (ENSMUSG00000059586.10, intron 4 of 6) -60413 ENSMUSG00000115896.1 ENSMUSG00000115896 ENSMUST00000229684 Gm36677 lincRNA Interval_95506 chr2 110614259 110614888 + 0 NA intron (ENSMUSG00000041644.14, intron 3 of 13) protein_coding-intron (ENSMUSG00000041644.14, intron 4 of 14) 8849 ENSMUSG00000041644.14 ENSMUSG00000041644 ENSMUST00000146664 Slc5a12 protein_coding Interval_172339 chrX 13199695 13200117 + 0 NA Intergenic Intergenic -2665 ENSMUSG00000084349.3 ENSMUSG00000084349 ENSMUST00000120557 Rpl3-ps1 processed_pseudogene Interval_155177 chr8 27220922 27221464 + 0 NA intron (ENSMUSG00000039720.7, intron 1 of 1) protein_coding-intron (ENSMUSG00000039720.7, intron 1 of 1) 2635 ENSMUSG00000039720.7 ENSMUSG00000039720 ENSMUST00000209299 Got1l1 protein_coding Interval_22332 chr11 8876112 8876416 + 0 NA intron (ENSMUSG00000046634.12, intron 20 of 42) protein_coding-intron (ENSMUSG00000046634.12, intron 27 of 49) 9032 ENSMUSG00000082095.1 ENSMUSG00000082095 ENSMUST00000119652 Gm11991 processed_pseudogene Interval_61990 chr15 85698468 85698680 + 0 NA intron (ENSMUSG00000116305.1, intron 4 of 6) processed_transcript-intron (ENSMUSG00000116305.1, intron 4 of 6) -8029 ENSMUSG00000065608.1 ENSMUSG00000065608 ENSMUST00000083674 Mirlet7c-2 miRNA Interval_101828 chr3 9798565 9798754 + 0 NA intron (ENSMUSG00000027508.15, intron 1 of 2) protein_coding-intron (ENSMUSG00000027508.15, intron 1 of 7) 31069 ENSMUSG00000088004.1 ENSMUSG00000088004 ENSMUST00000157379 Gm24786 rRNA Interval_61727 chr15 83616120 83616649 + 0 NA intron (ENSMUSG00000016763.15, intron 15 of 21) protein_coding-intron (ENSMUSG00000016763.15, intron 16 of 22) -2645 ENSMUSG00000016763.15 ENSMUSG00000016763 ENSMUST00000229057 Scube1 protein_coding Interval_37345 chr12 65258376 65259732 + 0 NA Intergenic Intergenic 7344 ENSMUSG00000113442.1 ENSMUSG00000113442 ENSMUST00000222221 Gm47973 processed_pseudogene Interval_155685 chr8 36146423 36149579 + 0 NA TTS (ENSMUSG00000050271.12) protein_coding-TTS (ENSMUSG00000050271.12) -11478 ENSMUSG00000109704.1 ENSMUSG00000109704 ENSMUST00000211253 Gm38414 lincRNA Interval_131550 chr5 138090378 138091915 + 0 NA intron (ENSMUSG00000029729.12, intron 1 of 3) protein_coding-intron (ENSMUSG00000029729.12, intron 1 of 5) 6026 ENSMUSG00000029729.12 ENSMUSG00000029729 ENSMUST00000110962 Zkscan1 protein_coding Interval_19307 chr10 96511631 96512469 + 0 NA intron (ENSMUSG00000112264.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000112264.1, intron 1 of 1) 11932 ENSMUSG00000112264.1 ENSMUSG00000112264 ENSMUST00000219016 Gm48505 lincRNA Interval_41100 chr12 111173961 111174156 + 0 NA intron (ENSMUSG00000021277.16, intron 2 of 4) protein_coding-intron (ENSMUSG00000021277.16, intron 1 of 11) 10433 ENSMUSG00000083193.1 ENSMUSG00000083193 ENSMUST00000121608 4930595D18Rik protein_coding Interval_94062 chr2 83337237 83337765 + 0 NA Intergenic Intergenic 16448 ENSMUSG00000081400.1 ENSMUSG00000081400 ENSMUST00000119790 Gm13680 processed_pseudogene Interval_77190 chr17 87227934 87228884 + 0 NA Intergenic Intergenic -33467 ENSMUSG00000117384.1 ENSMUSG00000117384 ENSMUST00000234580 C330024C12Rik lincRNA Interval_129559 chr5 120920242 120920458 + 0 NA intron (ENSMUSG00000032623.9, intron 5 of 5) protein_coding-intron (ENSMUSG00000032623.9, intron 5 of 5) 5814 ENSMUSG00000032623.9 ENSMUSG00000032623 ENSMUST00000044224 Oas1d protein_coding Interval_163840 chr9 27074796 27076596 + 0 NA intron (ENSMUSG00000035024.16, intron 1 of 11) protein_coding-intron (ENSMUSG00000035024.16, intron 25 of 35) -22855 ENSMUSG00000111390.1 ENSMUSG00000111390 ENSMUST00000217654 Gm48796 antisense Interval_39206 chr12 85841675 85842057 + 0 NA intron (ENSMUSG00000012609.19, intron 3 of 6) protein_coding-intron (ENSMUSG00000012609.19, intron 3 of 33) -19616 ENSMUSG00000021252.11 ENSMUSG00000021252 ENSMUST00000142331 Erg28 protein_coding Interval_151548 chr7 123449114 123449337 + 0 NA Intergenic Intergenic -14526 ENSMUSG00000030762.11 ENSMUSG00000030762 ENSMUST00000206106 Aqp8 protein_coding Interval_138875 chr6 92811179 92812149 + 0 NA intron (ENSMUSG00000030022.14, intron 20 of 29) protein_coding-intron (ENSMUSG00000030022.14, intron 30 of 39) -15968 ENSMUSG00000048636.7 ENSMUSG00000048636 ENSMUST00000133858 A730049H05Rik protein_coding Interval_79235 chr18 26574523 26575155 + 0 NA Intergenic Intergenic 79404 ENSMUSG00000088098.1 ENSMUSG00000088098 ENSMUST00000157473 Gm23674 snoRNA Interval_15878 chr10 58675455 58676056 + 0 NA promoter-TSS (ENSMUSG00000003227.4) protein_coding-promoter-TSS (ENSMUSG00000003227.4) -101 ENSMUSG00000003227.4 ENSMUSG00000003227 ENSMUST00000003312 Edar protein_coding Interval_78532 chr18 14511315 14512660 + 0 NA Intergenic Intergenic 19982 ENSMUSG00000117607.1 ENSMUSG00000117607 ENSMUST00000234589 Gm50098 processed_pseudogene Interval_45208 chr13 53196791 53197694 + 0 NA intron (ENSMUSG00000021464.14, intron 1 of 8) protein_coding-intron (ENSMUSG00000021464.14, intron 1 of 8) 78416 ENSMUSG00000021464.14 ENSMUSG00000021464 ENSMUST00000149299 Ror2 protein_coding Interval_24568 chr11 34518586 34519188 + 0 NA intron (ENSMUSG00000020143.15, intron 22 of 26) protein_coding-intron (ENSMUSG00000020143.15, intron 22 of 51) 204129 ENSMUSG00000069911.11 ENSMUSG00000069911 ENSMUST00000093192 Insyn2b protein_coding Interval_30302 chr11 93253686 93254188 + 0 NA intron (ENSMUSG00000056158.14, intron 2 of 8) protein_coding-intron (ENSMUSG00000056158.14, intron 3 of 9) 155909 ENSMUSG00000056158.14 ENSMUSG00000056158 ENSMUST00000107863 Car10 protein_coding Interval_24763 chr11 36940636 36941102 + 0 NA intron (ENSMUSG00000049336.16, intron 1 of 28) protein_coding-intron (ENSMUSG00000049336.16, intron 1 of 28) 3297 ENSMUSG00000049336.16 ENSMUSG00000049336 ENSMUST00000157030 Tenm2 protein_coding Interval_73654 chr17 42472251 42472556 + 0 NA intron (ENSMUSG00000042256.5, intron 2 of 2) protein_coding-intron (ENSMUSG00000042256.5, intron 3 of 3) 138992 ENSMUSG00000043972.8 ENSMUSG00000043972 ENSMUST00000068355 Opn5 protein_coding Interval_23128 chr11 20071979 20072416 + 0 NA intron (ENSMUSG00000020152.7, intron 8 of 8) protein_coding-intron (ENSMUSG00000020152.7, intron 8 of 8) 40712 ENSMUSG00000020152.7 ENSMUSG00000020152 ENSMUST00000134779 Actr2 protein_coding Interval_110747 chr4 7987384 7988438 + 0 NA Intergenic Intergenic -130709 ENSMUSG00000083068.1 ENSMUSG00000083068 ENSMUST00000120050 Gm11800 processed_pseudogene Interval_5699 chr1 91035425 91035705 + 0 NA intron (ENSMUSG00000026305.15, intron 1 of 12) protein_coding-intron (ENSMUSG00000026305.15, intron 1 of 12) -18021 ENSMUSG00000026305.15 ENSMUSG00000026305 ENSMUST00000187532 Lrrfip1 protein_coding Interval_40151 chr12 101992460 101993611 + 0 NA intron (ENSMUSG00000041781.9, intron 8 of 14) protein_coding-intron (ENSMUSG00000041781.9, intron 8 of 14) -15967 ENSMUSG00000113902.1 ENSMUSG00000113902 ENSMUST00000222608 Ndufb1-ps protein_coding Interval_90580 chr2 31239011 31239964 + 0 NA Intergenic Intergenic -6679 ENSMUSG00000062661.6 ENSMUSG00000062661 ENSMUST00000150670 Ncs1 protein_coding Interval_135521 chr6 39914760 39915425 + 0 NA intron (ENSMUSG00000057716.7, intron 1 of 3) protein_coding-intron (ENSMUSG00000057716.7, intron 1 of 3) -43121 ENSMUSG00000097406.1 ENSMUSG00000097406 ENSMUST00000180899 Gm26833 antisense Interval_133338 chr6 3457774 3458032 + 0 NA exon (ENSMUSG00000044156.14, exon 10 of 10) protein_coding-exon (ENSMUSG00000044156.14, exon 10 of 10) 29526 ENSMUSG00000044156.14 ENSMUSG00000044156 ENSMUST00000200972 Hepacam2 protein_coding Interval_165518 chr9 48961016 48962437 + 0 NA intron (ENSMUSG00000008590.4, intron 1 of 8) protein_coding-intron (ENSMUSG00000008590.4, intron 1 of 8) 3264 ENSMUSG00000008590.4 ENSMUSG00000008590 ENSMUST00000008734 Htr3b protein_coding Interval_48105 chr13 96126174 96127470 + 0 NA intron (ENSMUSG00000051111.16, intron 1 of 12) protein_coding-intron (ENSMUSG00000051111.16, intron 1 of 12) -6547 ENSMUSG00000100475.1 ENSMUSG00000100475 ENSMUST00000188138 Gm29543 lincRNA Interval_167133 chr9 65569266 65569509 + 0 NA intron (ENSMUSG00000050721.9, intron 3 of 6) protein_coding-intron (ENSMUSG00000050721.9, intron 2 of 5) 9647 ENSMUSG00000050721.9 ENSMUSG00000050721 ENSMUST00000213652 Plekho2 protein_coding Interval_118508 chr4 132173038 132173711 + 0 NA Intergenic Intergenic -24490 ENSMUSG00000081394.1 ENSMUSG00000081394 ENSMUST00000117559 Gm13215 processed_pseudogene Interval_89341 chr2 19521519 19521931 + 0 NA intron (ENSMUSG00000026734.9, intron 5 of 9) protein_coding-intron (ENSMUSG00000026734.9, intron 5 of 16) -12408 ENSMUSG00000084160.1 ENSMUSG00000084160 ENSMUST00000121928 Gm13345 processed_pseudogene Interval_60040 chr15 64160285 64160531 + 0 NA intron (ENSMUSG00000022377.16, intron 9 of 30) protein_coding-intron (ENSMUSG00000022377.16, intron 9 of 30) -36602 ENSMUSG00000022377.16 ENSMUSG00000022377 ENSMUST00000175963 Asap1 protein_coding Interval_55326 chr14 82972815 82974620 + 0 NA Intergenic Intergenic 80880 ENSMUSG00000115031.1 ENSMUSG00000115031 ENSMUST00000228219 Gm49051 processed_pseudogene Interval_89221 chr2 18154359 18155302 + 0 NA intron (ENSMUSG00000026743.16, intron 4 of 4) protein_coding-intron (ENSMUSG00000026743.16, intron 9 of 22) -3857 ENSMUSG00000064964.1 ENSMUSG00000064964 ENSMUST00000083030 Gm25147 snRNA Interval_157009 chr8 64399519 64400259 + 0 NA Intergenic Intergenic 17211 ENSMUSG00000109579.1 ENSMUSG00000109579 ENSMUST00000211285 Gm35521 lincRNA Interval_123498 chr5 32955095 32957289 + 0 NA exon (ENSMUSG00000037426.18, exon 33 of 33) protein_coding-exon (ENSMUSG00000037426.18, exon 33 of 33) 22242 ENSMUSG00000037426.18 ENSMUSG00000037426 ENSMUST00000127560 Depdc5 protein_coding Interval_91773 chr2 49457740 49458242 + 0 NA intron (ENSMUSG00000069495.12, intron 1 of 13) protein_coding-intron (ENSMUSG00000069495.12, intron 1 of 13) -59476 ENSMUSG00000077769.1 ENSMUSG00000077769 ENSMUST00000104581 Gm25215 snoRNA Interval_68614 chr16 81370481 81370915 + 0 NA intron (ENSMUSG00000022762.18, intron 1 of 8) protein_coding-intron (ENSMUSG00000022762.18, intron 1 of 15) 80536 ENSMUSG00000116735.1 ENSMUSG00000116735 ENSMUST00000231935 Gm49555 TEC Interval_163524 chr9 21859584 21860933 + 0 NA Intergenic Intergenic -7640 ENSMUSG00000032198.9 ENSMUSG00000032198 ENSMUST00000213775 Dock6 protein_coding Interval_110375 chr3 157549476 157551807 + 0 NA Intergenic Intergenic 6362 ENSMUSG00000065431.1 ENSMUSG00000065431 ENSMUST00000083497 Mir186 miRNA Interval_70979 chr17 16973345 16973619 + 0 NA exon (ENSMUSG00000060149.7, exon 1 of 1) lincRNA-exon (ENSMUSG00000060149.7, exon 1 of 1) 21930 ENSMUSG00000060149.7 ENSMUSG00000060149 ENSMUST00000071374 BC002059 lincRNA Interval_60950 chr15 78140065 78140820 + 0 NA intron (ENSMUSG00000092375.1, intron 1 of 1) antisense-intron (ENSMUSG00000092375.1, intron 1 of 1) -20414 ENSMUSG00000019146.2 ENSMUSG00000019146 ENSMUST00000019290 Cacng2 protein_coding Interval_84147 chr19 7527273 7527504 + 0 NA intron (ENSMUSG00000024759.14, intron 8 of 12) protein_coding-intron (ENSMUSG00000024759.14, intron 8 of 12) -30089 ENSMUSG00000060675.13 ENSMUSG00000060675 ENSMUST00000136756 Plaat3 protein_coding Interval_129324 chr5 119097604 119098312 + 0 NA Intergenic Intergenic -10276 ENSMUSG00000100573.1 ENSMUSG00000100573 ENSMUST00000190550 1700081H04Rik lincRNA Interval_120082 chr4 141701186 141701369 + 0 NA intron (ENSMUSG00000078515.4, intron 5 of 9) protein_coding-intron (ENSMUSG00000078515.4, intron 5 of 9) -15678 ENSMUSG00000040715.12 ENSMUSG00000040715 ENSMUST00000105782 Rsc1a1 protein_coding Interval_128564 chr5 114051896 114052962 + 0 NA intron (ENSMUSG00000042078.14, intron 5 of 14) protein_coding-intron (ENSMUSG00000042078.14, intron 6 of 15) -13085 ENSMUSG00000029592.11 ENSMUSG00000029592 ENSMUST00000198457 Usp30 protein_coding Interval_145330 chr7 33808570 33808782 + 0 NA TTS (ENSMUSG00000094428.1) miRNA-TTS (ENSMUSG00000094428.1) 559 ENSMUSG00000094428.1 ENSMUSG00000094428 ENSMUST00000179610 Gm26443 miRNA Interval_169825 chr9 102235331 102235813 + 0 NA intron (ENSMUSG00000032537.15, intron 1 of 4) protein_coding-intron (ENSMUSG00000032537.15, intron 1 of 15) -38164 ENSMUSG00000102702.1 ENSMUSG00000102702 ENSMUST00000193748 Gm37260 TEC Interval_20444 chr10 117650634 117651601 + 0 NA intron (ENSMUSG00000020183.11, intron 2 of 3) protein_coding-intron (ENSMUSG00000020183.11, intron 2 of 8) 11271 ENSMUSG00000096357.1 ENSMUSG00000096357 ENSMUST00000178844 Gm25709 snRNA Interval_73517 chr17 38707814 38708028 + 0 NA Intergenic Intergenic -11271 ENSMUSG00000117273.1 ENSMUSG00000117273 ENSMUST00000233036 Gm49815 unprocessed_pseudogene Interval_141101 chr6 124996573 124997506 + 0 NA promoter-TSS (ENSMUSG00000030329.11) protein_coding-promoter-TSS (ENSMUSG00000030329.11) -1398 ENSMUSG00000030329.11 ENSMUSG00000030329 ENSMUST00000160666 Pianp protein_coding Interval_15107 chr10 42631931 42632370 + 0 NA intron (ENSMUSG00000038280.12, intron 2 of 6) protein_coding-intron (ENSMUSG00000038280.12, intron 2 of 5) -46816 ENSMUSG00000038280.12 ENSMUSG00000038280 ENSMUST00000154048 Ostm1 protein_coding Interval_164536 chr9 37966772 37967011 + 0 NA Intergenic Intergenic -1464 ENSMUSG00000110535.1 ENSMUSG00000110535 ENSMUST00000212344 Olfr880-ps1 unprocessed_pseudogene Interval_118752 chr4 133530016 133530624 + 0 NA exon (ENSMUSG00000037600.16, exon 4 of 4) protein_coding-exon (ENSMUSG00000037600.16, exon 4 of 4) 5607 ENSMUSG00000028851.6 ENSMUSG00000028851 ENSMUST00000148612 Nudc protein_coding Interval_150066 chr7 105553933 105554945 + 0 NA promoter-TSS (ENSMUSG00000037049.9) protein_coding-promoter-TSS (ENSMUSG00000037049.9) -1252 ENSMUSG00000037049.9 ENSMUSG00000037049 ENSMUST00000211307 Smpd1 protein_coding Interval_140190 chr6 115134418 115135553 + 0 NA promoter-TSS (ENSMUSG00000009394.13) protein_coding-promoter-TSS (ENSMUSG00000009394.13) -150 ENSMUSG00000097486.2 ENSMUSG00000097486 ENSMUST00000181883 Gm17733 bidirectional_promoter_lncRNA Interval_130639 chr5 129382806 129383297 + 0 NA Intergenic Intergenic 18931 ENSMUSG00000104681.1 ENSMUSG00000104681 ENSMUST00000199076 Gm43001 lincRNA Interval_115811 chr4 104801353 104802134 + 0 NA intron (ENSMUSG00000029656.13, intron 3 of 3) protein_coding-intron (ENSMUSG00000029656.13, intron 11 of 11) 2535 ENSMUSG00000029656.13 ENSMUSG00000029656 ENSMUST00000123892 C8b protein_coding Interval_70186 chr17 6033371 6033717 + 0 NA TTS (ENSMUSG00000023805.17) protein_coding-TTS (ENSMUSG00000023805.17) 16511 ENSMUSG00000015659.12 ENSMUSG00000015659 ENSMUST00000139542 Serac1 protein_coding Interval_31581 chr11 101509982 101510214 + 0 NA exon (ENSMUSG00000017146.12, exon 14 of 23) protein_coding-exon (ENSMUSG00000017146.12, exon 14 of 23) 14760 ENSMUSG00000017146.12 ENSMUSG00000017146 ENSMUST00000190862 Brca1 protein_coding Interval_81790 chr18 64727712 64728124 + 0 NA promoter-TSS (ENSMUSG00000095778.1) snRNA-promoter-TSS (ENSMUSG00000095778.1) -148 ENSMUSG00000095778.1 ENSMUSG00000095778 ENSMUST00000158431 Gm23016 snRNA Interval_81174 chr18 55688326 55688552 + 0 NA Intergenic Intergenic 57789 ENSMUSG00000098119.1 ENSMUSG00000098119 ENSMUST00000182376 Gm26959 processed_pseudogene Interval_163043 chr9 14764764 14765059 + 0 NA intron (ENSMUSG00000031927.9, intron 2 of 3) protein_coding-intron (ENSMUSG00000031927.9, intron 2 of 3) -3252 ENSMUSG00000031927.9 ENSMUSG00000031927 ENSMUST00000060330 1700012B09Rik protein_coding Interval_10153 chr1 166137794 166138080 + 0 NA intron (ENSMUSG00000000544.14, intron 1 of 2) protein_coding-intron (ENSMUSG00000000544.14, intron 1 of 3) 7470 ENSMUSG00000000544.14 ENSMUSG00000000544 ENSMUST00000166860 Gpa33 protein_coding Interval_22894 chr11 17171824 17172599 + 0 NA intron (ENSMUSG00000033953.10, intron 1 of 5) protein_coding-intron (ENSMUSG00000033953.10, intron 1 of 5) -9896 ENSMUSG00000078970.5 ENSMUSG00000078970 ENSMUST00000046955 Wdr92 protein_coding Interval_2088 chr1 36321727 36322420 + 0 NA exon (ENSMUSG00000037447.16, exon 4 of 4) protein_coding-exon (ENSMUSG00000037447.16, exon 4 of 4) -10635 ENSMUSG00000102762.1 ENSMUSG00000102762 ENSMUST00000192234 4930403P22Rik lincRNA Interval_93093 chr2 70048000 70048600 + 0 NA intron (ENSMUSG00000042064.13, intron 2 of 34) protein_coding-intron (ENSMUSG00000042064.13, intron 2 of 34) 9389 ENSMUSG00000086132.1 ENSMUSG00000086132 ENSMUST00000140978 Gm13631 processed_transcript Interval_76432 chr17 80168003 80169624 + 0 NA intron (ENSMUSG00000035473.10, intron 2 of 3) protein_coding-intron (ENSMUSG00000035473.10, intron 4 of 6) 23661 ENSMUSG00000035473.10 ENSMUSG00000035473 ENSMUST00000133955 Galm protein_coding Interval_49381 chr13 111575923 111576341 + 0 NA Intergenic Intergenic -4129 ENSMUSG00000086649.1 ENSMUSG00000086649 ENSMUST00000150623 Gm15286 processed_transcript Interval_169474 chr9 97955085 97955599 + 0 NA intron (ENSMUSG00000032452.12, intron 1 of 16) protein_coding-intron (ENSMUSG00000032452.12, intron 1 of 17) -25187 ENSMUSG00000104462.1 ENSMUSG00000104462 ENSMUST00000191863 Gm37661 TEC Interval_51331 chr14 26491170 26491617 + 0 NA intron (ENSMUSG00000021870.17, intron 1 of 22) protein_coding-intron (ENSMUSG00000021870.17, intron 1 of 22) -6262 ENSMUSG00000065864.1 ENSMUSG00000065864 ENSMUST00000083930 Gm24031 snoRNA Interval_78078 chr18 7701406 7702933 + 0 NA Intergenic Intergenic -9443 ENSMUSG00000117542.1 ENSMUSG00000117542 ENSMUST00000234387 Gm18763 processed_pseudogene Interval_37213 chr12 59947344 59947842 + 0 NA Intergenic Intergenic 29632 ENSMUSG00000112050.1 ENSMUSG00000112050 ENSMUST00000218423 Gm29809 processed_pseudogene Interval_92041 chr2 52823170 52823566 + 0 NA Intergenic Intergenic -34492 ENSMUSG00000036053.17 ENSMUSG00000036053 ENSMUST00000050719 Fmnl2 protein_coding Interval_111669 chr4 25654283 25654490 + 0 NA intron (ENSMUSG00000055373.8, intron 1 of 1) protein_coding-intron (ENSMUSG00000055373.8, intron 2 of 2) -87564 ENSMUSG00000065040.1 ENSMUSG00000065040 ENSMUST00000083106 Gm24977 snRNA Interval_24230 chr11 31671375 31672415 + 0 NA promoter-TSS (ENSMUSG00000044502.16) protein_coding-promoter-TSS (ENSMUSG00000044502.16) -168 ENSMUSG00000044502.16 ENSMUSG00000044502 ENSMUST00000109415 Bod1 protein_coding Interval_59844 chr15 59698560 59700030 + 0 NA Intergenic Intergenic -27182 ENSMUSG00000115010.1 ENSMUSG00000115010 ENSMUST00000227801 Gm20150 processed_pseudogene Interval_31753 chr11 102644064 102644866 + 0 NA Intergenic Intergenic 15215 ENSMUSG00000076129.1 ENSMUSG00000076129 ENSMUST00000102175 Gm22920 miRNA Interval_42339 chr13 12219962 12220148 + 0 NA intron (ENSMUSG00000021311.9, intron 17 of 17) protein_coding-intron (ENSMUSG00000021311.9, intron 18 of 32) 38058 ENSMUSG00000021311.9 ENSMUSG00000021311 ENSMUST00000221290 Mtr protein_coding Interval_103258 chr3 37585840 37587769 + 0 NA Intergenic Intergenic 13268 ENSMUSG00000081093.1 ENSMUSG00000081093 ENSMUST00000119004 Gm12565 processed_pseudogene Interval_157908 chr8 75506868 75507155 + 0 NA intron (ENSMUSG00000031620.16, intron 3 of 14) protein_coding-intron (ENSMUSG00000031620.16, intron 1 of 12) 58220 ENSMUSG00000031620.16 ENSMUSG00000031620 ENSMUST00000121983 Iqcm protein_coding Interval_13212 chr10 13106938 13109235 + 0 NA intron (ENSMUSG00000019817.18, intron 2 of 2) protein_coding-intron (ENSMUSG00000019817.18, intron 2 of 8) -16269 ENSMUSG00000098635.1 ENSMUSG00000098635 ENSMUST00000185060 Gm27741 misc_RNA Interval_71291 chr17 21961157 21963254 + 0 NA promoter-TSS (ENSMUSG00000053347.15) protein_coding-promoter-TSS (ENSMUSG00000053347.15) 259 ENSMUSG00000071267.11 ENSMUSG00000071267 ENSMUST00000126485 Zfp942 protein_coding Interval_71581 chr17 24668532 24670317 + 0 NA promoter-TSS (ENSMUSG00000041130.10) protein_coding-promoter-TSS (ENSMUSG00000041130.10) -7718 ENSMUSG00000041130.10 ENSMUSG00000041130 ENSMUST00000234988 Zfp598 protein_coding Interval_89915 chr2 26444806 26446232 + 0 NA promoter-TSS (ENSMUSG00000026924.17) protein_coding-promoter-TSS (ENSMUSG00000026924.17) -405 ENSMUSG00000086714.1 ENSMUSG00000086714 ENSMUST00000139144 0610009E02Rik processed_transcript Interval_97220 chr2 132315965 132316688 + 0 NA Intergenic Intergenic 53085 ENSMUSG00000058793.14 ENSMUSG00000058793 ENSMUST00000138194 Cds2 protein_coding Interval_53785 chr14 61737919 61739226 + 0 NA Intergenic Intergenic 55062 ENSMUSG00000104187.1 ENSMUSG00000104187 ENSMUST00000194021 Gm37820 TEC Interval_163291 chr9 20642158 20643480 + 0 NA promoter-TSS (ENSMUSG00000066892.14) protein_coding-promoter-TSS (ENSMUSG00000066892.14) -506 ENSMUSG00000066892.14 ENSMUSG00000066892 ENSMUST00000153154 Fbxl12 protein_coding Interval_150576 chr7 112595401 112595681 + 0 NA Intergenic Intergenic 22684 ENSMUSG00000093002.1 ENSMUSG00000093002 ENSMUST00000175261 Gm24154 snoRNA Interval_122506 chr5 23483511 23483835 + 0 NA intron (ENSMUSG00000029004.15, intron 2 of 2) protein_coding-intron (ENSMUSG00000029004.15, intron 12 of 25) 4050 ENSMUSG00000088170.1 ENSMUSG00000088170 ENSMUST00000157545 Gm25219 misc_RNA Interval_3240 chr1 55082259 55082574 + 0 NA TTS (ENSMUSG00000025980.14) protein_coding-TTS (ENSMUSG00000025980.14) 5827 ENSMUSG00000025980.14 ENSMUSG00000025980 ENSMUST00000144077 Hspd1 protein_coding Interval_55632 chr14 96947333 96947557 + 0 NA intron (ENSMUSG00000115601.1, intron 3 of 3) lincRNA-intron (ENSMUSG00000115601.1, intron 3 of 3) 2426 ENSMUSG00000089130.1 ENSMUSG00000089130 ENSMUST00000158505 Gm24770 snoRNA Interval_115286 chr4 95318880 95319439 + 0 NA Intergenic Intergenic 83631 ENSMUSG00000100129.1 ENSMUSG00000100129 ENSMUST00000187014 Gm29064 lincRNA Interval_132898 chr5 148612078 148612624 + 0 NA Intergenic Intergenic 1293 ENSMUSG00000107098.1 ENSMUSG00000107098 ENSMUST00000202418 Gm29815 processed_pseudogene Interval_57374 chr15 10276374 10277353 + 0 NA intron (ENSMUSG00000005268.20, intron 1 of 5) protein_coding-intron (ENSMUSG00000005268.20, intron 1 of 8) -48517 ENSMUSG00000094814.1 ENSMUSG00000094814 ENSMUST00000157020 Gm21973 protein_coding Interval_157324 chr8 69297969 69298460 + 0 NA intron (ENSMUSG00000079038.3, intron 3 of 5) protein_coding-intron (ENSMUSG00000079038.3, intron 2 of 3) 27134 ENSMUSG00000079038.3 ENSMUSG00000079038 ENSMUST00000078257 D130040H23Rik protein_coding Interval_116390 chr4 111310526 111311060 + 0 NA intron (ENSMUSG00000061298.14, intron 1 of 6) protein_coding-intron (ENSMUSG00000061298.14, intron 5 of 12) 9812 ENSMUSG00000083904.1 ENSMUSG00000083904 ENSMUST00000117305 Gm12805 processed_pseudogene Interval_58315 chr15 32296386 32297381 + 0 NA intron (ENSMUSG00000022231.10, intron 1 of 7) protein_coding-intron (ENSMUSG00000022231.10, intron 1 of 22) 52058 ENSMUSG00000022231.10 ENSMUSG00000022231 ENSMUST00000227429 Sema5a protein_coding Interval_102317 chr3 21844551 21844834 + 0 NA Intergenic Intergenic -82161 ENSMUSG00000103441.1 ENSMUSG00000103441 ENSMUST00000193217 7530428D23Rik transcribed_processed_pseudogene Interval_94903 chr2 101525798 101526558 + 0 NA Intergenic Intergenic -44446 ENSMUSG00000093614.1 ENSMUSG00000093614 ENSMUST00000177431 Gm20693 processed_pseudogene Interval_153627 chr8 4087060 4087949 + 0 NA promoter-TSS (ENSMUSG00000074482.5) processed_pseudogene-promoter-TSS (ENSMUSG00000074482.5) -154 ENSMUSG00000074482.5 ENSMUSG00000074482 ENSMUST00000159522 Gm16589 processed_pseudogene Interval_94972 chr2 102303066 102303663 + 0 NA exon (ENSMUSG00000027189.16, exon 5 of 5) protein_coding-exon (ENSMUSG00000027189.16, exon 5 of 5) 8843 ENSMUSG00000083306.1 ENSMUSG00000083306 ENSMUST00000122411 Gm13868 processed_pseudogene Interval_19166 chr10 95250598 95252450 + 0 NA intron (ENSMUSG00000045867.10, intron 2 of 2) protein_coding-intron (ENSMUSG00000045867.10, intron 2 of 2) 63329 ENSMUSG00000112744.1 ENSMUSG00000112744 ENSMUST00000219461 Gm48880 TEC Interval_41906 chr13 4185313 4185807 + 0 NA Intergenic Intergenic -8298 ENSMUSG00000021213.12 ENSMUSG00000021213 ENSMUST00000140971 Akr1c13 protein_coding Interval_141394 chr6 127975193 127975662 + 0 NA intron (ENSMUSG00000030352.15, intron 2 of 2) protein_coding-intron (ENSMUSG00000030352.15, intron 3 of 8) -30588 ENSMUSG00000085813.1 ENSMUSG00000085813 ENSMUST00000132657 Gm15870 antisense Interval_20746 chr10 120701850 120702500 + 0 NA Intergenic Intergenic -2972 ENSMUSG00000112716.1 ENSMUSG00000112716 ENSMUST00000219022 4930471E19Rik lincRNA Interval_101554 chr3 5579297 5579657 + 0 NA Intergenic Intergenic -3332 ENSMUSG00000040374.13 ENSMUSG00000040374 ENSMUST00000071280 Pex2 protein_coding Interval_100966 chr2 173692308 173692786 + 0 NA intron (ENSMUSG00000027519.10, intron 3 of 5) protein_coding-intron (ENSMUSG00000027519.10, intron 3 of 6) 8601 ENSMUSG00000098588.1 ENSMUSG00000098588 ENSMUST00000183857 Mir6340 miRNA Interval_58088 chr15 27787875 27788494 + 0 NA exon (ENSMUSG00000022263.10, exon 1 of 2) protein_coding-exon (ENSMUSG00000022263.10, exon 1 of 2) -68123 ENSMUSG00000115641.1 ENSMUSG00000115641 ENSMUST00000228765 Gm9891 TEC Interval_8429 chr1 139204680 139205649 + 0 NA intron (ENSMUSG00000063681.14, intron 11 of 11) protein_coding-intron (ENSMUSG00000063681.14, intron 11 of 11) 50012 ENSMUSG00000102243.1 ENSMUSG00000102243 ENSMUST00000191655 Gm37718 TEC Interval_12222 chr1 190934923 190935151 + 0 NA intron (ENSMUSG00000026634.16, intron 3 of 3) protein_coding-intron (ENSMUSG00000026634.16, intron 3 of 9) -2215 ENSMUSG00000026634.16 ENSMUSG00000026634 ENSMUST00000146048 Angel2 protein_coding Interval_113373 chr4 53895351 53896821 + 0 NA Intergenic Intergenic -9610 ENSMUSG00000077418.1 ENSMUSG00000077418 ENSMUST00000104230 Gm23745 snoRNA Interval_146268 chr7 45067350 45068472 + 0 NA intron (ENSMUSG00000003421.13, intron 1 of 6) protein_coding-intron (ENSMUSG00000003421.13, intron 1 of 8) 5438 ENSMUSG00000003421.13 ENSMUSG00000003421 ENSMUST00000210668 Nosip protein_coding Interval_37211 chr12 59838933 59840178 + 0 NA Intergenic Intergenic -119226 ENSMUSG00000112355.1 ENSMUSG00000112355 ENSMUST00000219078 Gm48285 TEC Interval_38145 chr12 75951286 75952269 + 0 NA intron (ENSMUSG00000063450.14, intron 44 of 114) protein_coding-intron (ENSMUSG00000063450.14, intron 44 of 115) 42674 ENSMUSG00000092922.1 ENSMUSG00000092922 ENSMUST00000175181 Mir5101 miRNA Interval_145025 chr7 29489509 29490294 + 0 NA intron (ENSMUSG00000030583.16, intron 1 of 3) protein_coding-intron (ENSMUSG00000030583.16, intron 2 of 22) -34642 ENSMUSG00000074224.3 ENSMUSG00000074224 ENSMUST00000098602 4932431P20Rik transcribed_unitary_pseudogene Interval_31562 chr11 101381781 101382415 + 0 NA Intergenic Intergenic 14537 ENSMUSG00000078650.2 ENSMUSG00000078650 ENSMUST00000019469 G6pc protein_coding Interval_11159 chr1 179750047 179750281 + 0 NA intron (ENSMUSG00000026491.13, intron 1 of 2) protein_coding-intron (ENSMUSG00000026491.13, intron 33 of 35) -49884 ENSMUSG00000087236.3 ENSMUSG00000087236 ENSMUST00000223392 Kif28 protein_coding Interval_33779 chr11 118454663 118455705 + 0 NA promoter-TSS (ENSMUSG00000086514.1) antisense-promoter-TSS (ENSMUSG00000086514.1) -189 ENSMUSG00000086514.1 ENSMUSG00000086514 ENSMUST00000142751 Gm11747 antisense Interval_66889 chr16 38360467 38361182 + 0 NA intron (ENSMUSG00000095464.1, intron 2 of 2) protein_coding-intron (ENSMUSG00000095464.1, intron 2 of 2) -11174 ENSMUSG00000022803.12 ENSMUSG00000022803 ENSMUST00000146342 Popdc2 protein_coding Interval_106864 chr3 101396546 101397075 + 0 NA intron (ENSMUSG00000042035.11, intron 1 of 10) protein_coding-intron (ENSMUSG00000042035.11, intron 2 of 10) -10983 ENSMUSG00000104639.1 ENSMUSG00000104639 ENSMUST00000197514 Gm42939 sense_intronic Interval_83434 chr18 85423592 85423822 + 0 NA Intergenic Intergenic 293018 ENSMUSG00000117854.1 ENSMUSG00000117854 ENSMUST00000237113 Gm7612 processed_pseudogene Interval_105049 chr3 80302522 80302771 + 0 NA intron (ENSMUSG00000102379.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000102379.1, intron 1 of 2) 31949 ENSMUSG00000102379.1 ENSMUSG00000102379 ENSMUST00000193516 Gm37971 lincRNA Interval_54391 chr14 68188738 68189075 + 0 NA Intergenic Intergenic -21832 ENSMUSG00000087772.1 ENSMUSG00000087772 ENSMUST00000157147 Gm22319 snoRNA Interval_70278 chr17 8143929 8144527 + 0 NA intron (ENSMUSG00000116988.1, intron 2 of 12) protein_coding-intron (ENSMUSG00000095687.2, intron 2 of 8) 3557 ENSMUSG00000095687.2 ENSMUSG00000095687 ENSMUST00000097420 Rnaset2a protein_coding Interval_68573 chr16 78954280 78954863 + 0 NA intron (ENSMUSG00000022857.13, intron 26 of 26) protein_coding-intron (ENSMUSG00000022857.13, intron 27 of 27) -9525 ENSMUSG00000085094.2 ENSMUSG00000085094 ENSMUST00000152173 Gm15692 processed_pseudogene Interval_76799 chr17 84146005 84146221 + 0 NA intron (ENSMUSG00000117485.1, intron 3 of 3) lincRNA-intron (ENSMUSG00000117485.1, intron 3 of 3) -6272 ENSMUSG00000117485.1 ENSMUSG00000117485 ENSMUST00000234394 Gm19696 lincRNA Interval_11041 chr1 178724082 178724862 + 0 NA intron (ENSMUSG00000026494.12, intron 4 of 14) protein_coding-intron (ENSMUSG00000026494.12, intron 4 of 14) -31336 ENSMUSG00000102922.1 ENSMUSG00000102922 ENSMUST00000192621 Gm34176 processed_pseudogene Interval_41462 chr12 114464572 114464975 + 0 NA Intergenic Intergenic -2043 ENSMUSG00000102301.1 ENSMUSG00000102301 ENSMUST00000195037 Ighv8-2 IG_V_gene Interval_8216 chr1 136554826 136557828 + 0 NA TTS (ENSMUSG00000104414.1) lincRNA-TTS (ENSMUSG00000104414.1) 14722 ENSMUSG00000104414.1 ENSMUSG00000104414 ENSMUST00000194018 Gm37799 lincRNA Interval_23323 chr11 21370278 21371855 + 0 NA promoter-TSS (ENSMUSG00000001891.16) protein_coding-promoter-TSS (ENSMUSG00000001891.16) 666 ENSMUSG00000087253.1 ENSMUSG00000087253 ENSMUST00000131570 Gm12043 processed_transcript Interval_35341 chr12 20843007 20845662 + 0 NA Intergenic Intergenic -28555 ENSMUSG00000099759.1 ENSMUSG00000099759 ENSMUST00000189625 1700030C10Rik processed_transcript Interval_174662 chrX 162717774 162718663 + 0 NA Intergenic Intergenic 18395 ENSMUSG00000086034.1 ENSMUSG00000086034 ENSMUST00000136472 Gm15201 processed_transcript Interval_122238 chr5 20551477 20551769 + 0 NA intron (ENSMUSG00000040003.18, intron 9 of 15) protein_coding-intron (ENSMUSG00000040003.18, intron 14 of 22) -36973 ENSMUSG00000106240.1 ENSMUSG00000106240 ENSMUST00000196129 Gm3544 processed_pseudogene Interval_23003 chr11 18756529 18756852 + 0 NA promoter-TSS (ENSMUSG00000099449.1) lincRNA-promoter-TSS (ENSMUSG00000099449.1) 48 ENSMUSG00000099449.1 ENSMUSG00000099449 ENSMUST00000188856 Gm28401 lincRNA Interval_10351 chr1 169911056 169911313 + 0 NA Intergenic Intergenic -18745 ENSMUSG00000070532.5 ENSMUSG00000070532 ENSMUST00000175731 Ccdc190 protein_coding Interval_43742 chr13 35905548 35906550 + 0 NA exon (ENSMUSG00000114270.1, exon 1 of 2) lincRNA-exon (ENSMUSG00000114270.1, exon 1 of 2) 279 ENSMUSG00000021418.15 ENSMUSG00000021418 ENSMUST00000174230 Rpp40 protein_coding Interval_111635 chr4 24897062 24899024 + 0 NA promoter-TSS (ENSMUSG00000028261.13) protein_coding-promoter-TSS (ENSMUSG00000028261.13) -133 ENSMUSG00000028261.13 ENSMUSG00000028261 ENSMUST00000151249 Ndufaf4 protein_coding Interval_33500 chr11 116900729 116901238 + 0 NA Intergenic Intergenic -46352 ENSMUSG00000043857.16 ENSMUSG00000043857 ENSMUST00000126757 Mgat5b protein_coding Interval_86187 chr19 37657908 37658316 + 0 NA intron (ENSMUSG00000053799.8, intron 21 of 22) protein_coding-intron (ENSMUSG00000053799.8, intron 20 of 21) -27469 ENSMUSG00000062432.4 ENSMUSG00000062432 ENSMUST00000073391 Cyp26c1 protein_coding Interval_1943 chr1 34819290 34820067 + 0 NA TTS (ENSMUSG00000037503.12) protein_coding-TTS (ENSMUSG00000037503.12) -3847 ENSMUSG00000104358.1 ENSMUSG00000104358 ENSMUST00000192924 Gm37127 TEC Interval_84203 chr19 8735374 8736623 + 0 NA exon (ENSMUSG00000042729.11, exon 2 of 11) protein_coding-exon (ENSMUSG00000042729.11, exon 2 of 11) -3670 ENSMUSG00000042729.11 ENSMUSG00000042729 ENSMUST00000238116 Wdr74 protein_coding Interval_25847 chr11 52116220 52117396 + 0 NA intron (ENSMUSG00000020349.4, intron 2 of 6) protein_coding-intron (ENSMUSG00000020349.4, intron 2 of 6) -1935 ENSMUSG00000020349.4 ENSMUSG00000020349 ENSMUST00000142939 Ppp2ca protein_coding Interval_72643 chr17 31276689 31277695 + 0 NA promoter-TSS (ENSMUSG00000024033.10) protein_coding-promoter-TSS (ENSMUSG00000024033.10) -231 ENSMUSG00000024033.10 ENSMUSG00000024033 ENSMUST00000235144 Rsph1 protein_coding Interval_126110 chr5 77464624 77465148 + 0 NA promoter-TSS (ENSMUSG00000107232.1) lincRNA-promoter-TSS (ENSMUSG00000107232.1) -602 ENSMUSG00000107232.1 ENSMUSG00000107232 ENSMUST00000201654 1700017L05Rik lincRNA Interval_14258 chr10 29875112 29876449 + 0 NA Intergenic Intergenic 94369 ENSMUSG00000111427.1 ENSMUSG00000111427 ENSMUST00000215034 Gm6390 processed_pseudogene Interval_108912 chr3 133264054 133264873 + 0 NA Intergenic Intergenic -29514 ENSMUSG00000040969.14 ENSMUSG00000040969 ENSMUST00000161932 Arhgef38 protein_coding Interval_162807 chr9 9289499 9290071 + 0 NA Intergenic Intergenic -11606 ENSMUSG00000088076.1 ENSMUSG00000088076 ENSMUST00000157451 Gm22815 snRNA Interval_92376 chr2 59360923 59361829 + 0 NA Intergenic Intergenic 26095 ENSMUSG00000087455.7 ENSMUSG00000087455 ENSMUST00000155111 5330411J11Rik processed_transcript Interval_165690 chr9 50992649 50993450 + 0 NA intron (ENSMUSG00000037112.16, intron 3 of 3) protein_coding-intron (ENSMUSG00000037112.16, intron 3 of 15) 15951 ENSMUSG00000037112.16 ENSMUSG00000037112 ENSMUST00000176327 Sik2 protein_coding Interval_64454 chr16 11510566 11511767 + 0 NA intron (ENSMUSG00000071669.14, intron 14 of 20) protein_coding-intron (ENSMUSG00000071669.14, intron 7 of 13) -14860 ENSMUSG00000082653.1 ENSMUSG00000082653 ENSMUST00000117770 Gm15897 processed_pseudogene Interval_77031 chr17 85821961 85823830 + 0 NA intron (ENSMUSG00000100345.1, intron 1 of 4) lincRNA-intron (ENSMUSG00000100345.1, intron 1 of 4) 1149 ENSMUSG00000100345.1 ENSMUSG00000100345 ENSMUST00000186162 Gm29418 lincRNA Interval_110404 chr3 157848501 157849232 + 0 NA Intergenic Intergenic -31071 ENSMUSG00000106419.1 ENSMUSG00000106419 ENSMUST00000198658 Gm5550 processed_pseudogene Interval_162010 chr8 124398663 124399359 + 0 NA intron (ENSMUSG00000050751.14, intron 1 of 6) protein_coding-intron (ENSMUSG00000050751.14, intron 1 of 6) 40647 ENSMUSG00000050751.14 ENSMUSG00000050751 ENSMUST00000140126 Pgbd5 protein_coding Interval_30889 chr11 97078913 97079455 + 0 NA Intergenic Intergenic 15416 ENSMUSG00000098769.1 ENSMUSG00000098769 ENSMUST00000183945 Mir8103 miRNA Interval_37035 chr12 56674493 56675039 + 0 NA Intergenic Intergenic 7795 ENSMUSG00000112886.1 ENSMUSG00000112886 ENSMUST00000218074 Gm18339 processed_pseudogene Interval_19868 chr10 110735480 110735670 + 0 NA Intergenic Intergenic -9890 ENSMUSG00000020185.16 ENSMUSG00000020185 ENSMUST00000174593 E2f7 protein_coding Interval_32650 chr11 109419642 109420508 + 0 NA exon (ENSMUSG00000045065.7, exon 2 of 2) protein_coding-exon (ENSMUSG00000045065.7, exon 2 of 2) -6145 ENSMUSG00000020610.17 ENSMUSG00000020610 ENSMUST00000154875 Amz2 protein_coding Interval_75831 chr17 71680648 71680862 + 0 NA intron (ENSMUSG00000045761.16, intron 1 of 2) protein_coding-intron (ENSMUSG00000045761.16, intron 1 of 19) -4050 ENSMUSG00000045761.16 ENSMUSG00000045761 ENSMUST00000129072 Togaram2 protein_coding Interval_152939 chr7 139937278 139938060 + 0 NA exon (ENSMUSG00000066129.15, exon 2 of 2) protein_coding-exon (ENSMUSG00000066129.15, exon 2 of 2) 1923 ENSMUSG00000066129.15 ENSMUSG00000066129 ENSMUST00000210154 Kndc1 protein_coding Interval_79298 chr18 30246044 30247326 + 0 NA Intergenic Intergenic -20564 ENSMUSG00000117465.1 ENSMUSG00000117465 ENSMUST00000234467 Gm49980 lincRNA Interval_58215 chr15 30939365 30939680 + 0 NA intron (ENSMUSG00000022240.10, intron 16 of 21) protein_coding-intron (ENSMUSG00000022240.10, intron 17 of 22) 23356 ENSMUSG00000115012.1 ENSMUSG00000115012 ENSMUST00000228332 9630009A06Rik antisense Interval_169517 chr9 98717639 98718241 + 0 NA Intergenic Intergenic -11674 ENSMUSG00000102458.1 ENSMUSG00000102458 ENSMUST00000195532 Pisrt1 TEC Interval_4280 chr1 72362901 72363221 + 0 NA intron (ENSMUSG00000026187.9, intron 16 of 20) protein_coding-intron (ENSMUSG00000026187.9, intron 16 of 20) 55634 ENSMUSG00000026187.9 ENSMUSG00000026187 ENSMUST00000027379 Xrcc5 protein_coding Interval_82584 chr18 75294819 75295748 + 0 NA TTS (ENSMUSG00000102047.1) transcribed_processed_pseudogene-TTS (ENSMUSG00000102047.1) 2034 ENSMUSG00000102047.1 ENSMUSG00000102047 ENSMUST00000186356 2010010A06Rik transcribed_processed_pseudogene Interval_103745 chr3 52281825 52282261 + 0 NA promoter-TSS (ENSMUSG00000102844.1) TEC-promoter-TSS (ENSMUSG00000102844.1) -198 ENSMUSG00000102844.1 ENSMUSG00000102844 ENSMUST00000193915 Gm38034 TEC Interval_51949 chr14 34188287 34189078 + 0 NA exon (ENSMUSG00000071531.3, exon 2 of 2) protein_coding-exon (ENSMUSG00000071531.3, exon 2 of 2) -12373 ENSMUSG00000115673.1 ENSMUSG00000115673 ENSMUST00000228606 Gm18884 processed_pseudogene Interval_117015 chr4 119022036 119022531 + 0 NA Intergenic Intergenic -21798 ENSMUSG00000087464.1 ENSMUSG00000087464 ENSMUST00000150754 Gm12862 lincRNA Interval_100139 chr2 167294295 167296053 + 0 NA Intergenic Intergenic -13397 ENSMUSG00000083661.1 ENSMUSG00000083661 ENSMUST00000118980 Gm11473 processed_pseudogene Interval_83797 chr19 4762035 4763336 + 0 NA TTS (ENSMUSG00000033760.17) protein_coding-TTS (ENSMUSG00000033760.17) 2486 ENSMUSG00000103651.1 ENSMUSG00000103651 ENSMUST00000195512 Gm37206 TEC Interval_65373 chr16 21975906 21976964 + 0 NA promoter-TSS (ENSMUSG00000044626.13) protein_coding-promoter-TSS (ENSMUSG00000044626.13) 30 ENSMUSG00000044626.13 ENSMUSG00000044626 ENSMUST00000232120 Liph protein_coding Interval_64735 chr16 14639388 14640041 + 0 NA Intergenic Intergenic 59493 ENSMUSG00000075395.11 ENSMUSG00000075395 ENSMUST00000100165 A630010A05Rik protein_coding Interval_27017 chr11 62393928 62395310 + 0 NA TTS (ENSMUSG00000018501.17) protein_coding-TTS (ENSMUSG00000018501.17) -11265 ENSMUSG00000018501.17 ENSMUSG00000018501 ENSMUST00000141447 Ncor1 protein_coding Interval_111023 chr4 11290815 11292040 + 0 NA intron (ENSMUSG00000045205.16, intron 3 of 12) protein_coding-intron (ENSMUSG00000045205.16, intron 8 of 18) -12008 ENSMUSG00000089185.1 ENSMUSG00000089185 ENSMUST00000158560 Gm22940 snRNA Interval_108660 chr3 129878091 129879465 + 0 NA promoter-TSS (ENSMUSG00000027999.15) protein_coding-promoter-TSS (ENSMUSG00000027999.15) -36 ENSMUSG00000027999.15 ENSMUSG00000027999 ENSMUST00000196736 Pla2g12a protein_coding Interval_24988 chr11 42576594 42577118 + 0 NA intron (ENSMUSG00000007653.12, intron 5 of 9) protein_coding-intron (ENSMUSG00000007653.12, intron 6 of 9) 155506 ENSMUSG00000007653.12 ENSMUSG00000007653 ENSMUST00000192403 Gabrb2 protein_coding Interval_37616 chr12 70359563 70360570 + 0 NA Intergenic Intergenic 12604 ENSMUSG00000112945.1 ENSMUSG00000112945 ENSMUST00000223521 Gm32151 bidirectional_promoter_lncRNA Interval_88239 chr19 61015148 61015596 + 0 NA intron (ENSMUSG00000003228.9, intron 2 of 4) protein_coding-intron (ENSMUSG00000003228.9, intron 2 of 15) -1827 ENSMUSG00000088894.1 ENSMUSG00000088894 ENSMUST00000158269 Gm22520 snoRNA Interval_76132 chr17 75372384 75373423 + 0 NA intron (ENSMUSG00000001870.16, intron 32 of 34) protein_coding-intron (ENSMUSG00000001870.16, intron 31 of 33) -62993 ENSMUSG00000071042.12 ENSMUSG00000071042 ENSMUST00000234011 Rasgrp3 protein_coding Interval_66741 chr16 36887444 36888191 + 0 NA TTS (ENSMUSG00000034243.17) protein_coding-TTS (ENSMUSG00000034243.17) -6577 ENSMUSG00000116795.1 ENSMUSG00000116795 ENSMUST00000231790 Gm49600 TEC Interval_16951 chr10 70104001 70104237 + 0 NA intron (ENSMUSG00000048701.13, intron 1 of 8) protein_coding-intron (ENSMUSG00000048701.13, intron 1 of 8) -70892 ENSMUSG00000048701.13 ENSMUSG00000048701 ENSMUST00000135607 Ccdc6 protein_coding Interval_73506 chr17 38314418 38314630 + 0 NA exon (ENSMUSG00000092615.2, exon 2 of 3) unprocessed_pseudogene-exon (ENSMUSG00000092615.2, exon 2 of 3) 487 ENSMUSG00000092615.2 ENSMUSG00000092615 ENSMUST00000172948 Olfr762-ps1 unprocessed_pseudogene Interval_11388 chr1 181510317 181511629 + 0 NA exon (ENSMUSG00000050625.4, exon 1 of 1) protein_coding-exon (ENSMUSG00000050625.4, exon 1 of 1) 478 ENSMUSG00000050625.4 ENSMUSG00000050625 ENSMUST00000058825 Ccdc121 protein_coding Interval_72875 chr17 32851564 32853372 + 0 NA promoter-TSS (ENSMUSG00000117373.1) transcribed_unprocessed_pseudogene-promoter-TSS (ENSMUSG00000117373.1) -523 ENSMUSG00000117373.1 ENSMUSG00000117373 ENSMUST00000234456 Gm18273 transcribed_unprocessed_pseudogene Interval_60796 chr15 76837042 76837650 + 0 NA Intergenic Intergenic -19176 ENSMUSG00000033697.16 ENSMUSG00000033697 ENSMUST00000176736 Arhgap39 protein_coding Interval_55547 chr14 91484501 91484819 + 0 NA Intergenic Intergenic 163179 ENSMUSG00000115368.1 ENSMUSG00000115368 ENSMUST00000227213 Gm48942 lincRNA Interval_129537 chr5 120774664 120775913 + 0 NA intron (ENSMUSG00000032661.9, intron 1 of 7) protein_coding-intron (ENSMUSG00000032661.9, intron 1 of 15) -2508 ENSMUSG00000107179.1 ENSMUSG00000107179 ENSMUST00000201006 Gm43069 antisense Interval_121764 chr5 7428315 7429007 + 0 NA Intergenic Intergenic -28299 ENSMUSG00000098077.1 ENSMUSG00000098077 ENSMUST00000182928 Gm4960 processed_pseudogene Interval_119751 chr4 139677181 139677392 + 0 NA Intergenic Intergenic 23737 ENSMUSG00000028738.14 ENSMUSG00000028738 ENSMUST00000166773 Tas1r2 protein_coding Interval_16908 chr10 69785182 69785441 + 0 NA promoter-TSS (ENSMUSG00000069601.14) protein_coding-promoter-TSS (ENSMUSG00000069601.14) -218950 ENSMUSG00000112729.1 ENSMUSG00000112729 ENSMUST00000220152 Gm46231 processed_pseudogene Interval_148486 chr7 81651745 81654121 + 0 NA intron (ENSMUSG00000025813.14, intron 1 of 8) protein_coding-intron (ENSMUSG00000025813.14, intron 1 of 8) -16795 ENSMUSG00000088057.1 ENSMUSG00000088057 ENSMUST00000157432 Gm26149 snRNA Interval_165337 chr9 46388698 46390211 + 0 NA Intergenic Intergenic -7908 ENSMUSG00000110802.1 ENSMUSG00000110802 ENSMUST00000213920 Gm47141 lincRNA Interval_10638 chr1 172390610 172392224 + 0 NA promoter-TSS (ENSMUSG00000102278.1) TEC-promoter-TSS (ENSMUSG00000102278.1) -428 ENSMUSG00000102278.1 ENSMUSG00000102278 ENSMUST00000193540 Gm37145 TEC Interval_43744 chr13 35946688 35947795 + 0 NA Intergenic Intergenic -9408 ENSMUSG00000114910.1 ENSMUSG00000114910 ENSMUST00000226038 Gm48756 processed_pseudogene Interval_102485 chr3 27140223 27140678 + 0 NA intron (ENSMUSG00000027699.19, intron 7 of 23) protein_coding-intron (ENSMUSG00000027699.19, intron 7 of 18) 6751 ENSMUSG00000027699.19 ENSMUSG00000027699 ENSMUST00000175857 Ect2 protein_coding Interval_58648 chr15 36803718 36803998 + 0 NA Intergenic Intergenic -5087 ENSMUSG00000093021.1 ENSMUSG00000093021 ENSMUST00000175280 Gm25303 miRNA Interval_51584 chr14 30516192 30516753 + 0 NA intron (ENSMUSG00000021962.9, intron 1 of 4) protein_coding-intron (ENSMUSG00000021962.9, intron 6 of 9) -7235 ENSMUSG00000021962.9 ENSMUSG00000021962 ENSMUST00000225934 Dcp1a protein_coding Interval_44990 chr13 51170462 51172026 + 0 NA exon (ENSMUSG00000021396.5, exon 1 of 2) protein_coding-exon (ENSMUSG00000021396.5, exon 1 of 2) 185 ENSMUSG00000021396.5 ENSMUSG00000021396 ENSMUST00000221339 Nxnl2 protein_coding Interval_138561 chr6 89315494 89316160 + 0 NA TTS (ENSMUSG00000030084.11) protein_coding-TTS (ENSMUSG00000030084.11) 5262 ENSMUSG00000030084.11 ENSMUSG00000030084 ENSMUST00000205121 Plxna1 protein_coding Interval_84897 chr19 18673023 18673673 + 0 NA intron (ENSMUSG00000024726.10, intron 1 of 7) protein_coding-intron (ENSMUSG00000024726.10, intron 1 of 7) 2019 ENSMUSG00000024726.10 ENSMUSG00000024726 ENSMUST00000236401 Carnmt1 protein_coding Interval_5548 chr1 89739013 89739929 + 0 NA intron (ENSMUSG00000055013.16, intron 10 of 16) protein_coding-intron (ENSMUSG00000055013.16, intron 10 of 17) -49692 ENSMUSG00000055013.16 ENSMUSG00000055013 ENSMUST00000212924 Agap1 protein_coding Interval_151312 chr7 120924295 120924606 + 0 NA intron (ENSMUSG00000030880.14, intron 3 of 19) protein_coding-intron (ENSMUSG00000030880.14, intron 3 of 20) -10380 ENSMUSG00000030880.14 ENSMUSG00000030880 ENSMUST00000209014 Polr3e protein_coding Interval_103348 chr3 39935919 39936772 + 0 NA Intergenic Intergenic 112768 ENSMUSG00000106948.1 ENSMUSG00000106948 ENSMUST00000202316 Gm42785 processed_pseudogene Interval_162883 chr9 11377477 11378547 + 0 NA Intergenic Intergenic -99969 ENSMUSG00000110734.1 ENSMUSG00000110734 ENSMUST00000216671 Gm18934 processed_pseudogene Interval_71520 chr17 24269124 24269390 + 0 NA intron (ENSMUSG00000035435.17, intron 26 of 30) protein_coding-intron (ENSMUSG00000035435.17, intron 25 of 29) -17910 ENSMUSG00000072082.7 ENSMUSG00000072082 ENSMUST00000234096 Ccnf protein_coding Interval_76199 chr17 76899594 76900322 + 0 NA Intergenic Intergenic -36682 ENSMUSG00000117388.1 ENSMUSG00000117388 ENSMUST00000235006 Gm6496 processed_pseudogene Interval_104553 chr3 67832824 67833263 + 0 NA Intergenic Intergenic -59177 ENSMUSG00000051777.6 ENSMUSG00000051777 ENSMUST00000063263 Iqcj protein_coding Interval_93490 chr2 73503004 73503278 + 0 NA intron (ENSMUSG00000075284.10, intron 1 of 2) protein_coding-intron (ENSMUSG00000075284.10, intron 1 of 7) 43436 ENSMUSG00000086069.1 ENSMUSG00000086069 ENSMUST00000145170 Gm13708 lincRNA Interval_114954 chr4 87648122 87649139 + 0 NA Intergenic Intergenic 67841 ENSMUSG00000082443.1 ENSMUSG00000082443 ENSMUST00000118382 Gm12604 processed_pseudogene Interval_144488 chr7 25419228 25420025 + 0 NA exon (ENSMUSG00000108518.1, exon 1 of 1) processed_pseudogene-exon (ENSMUSG00000108518.1, exon 1 of 1) 200 ENSMUSG00000108518.1 ENSMUSG00000108518 ENSMUST00000206270 Gm5587 processed_pseudogene Interval_164243 chr9 34201795 34202030 + 0 NA Intergenic Intergenic 1684 ENSMUSG00000098909.1 ENSMUSG00000098909 ENSMUST00000183960 Gm27161 processed_pseudogene Interval_120642 chr4 149841117 149842157 + 0 NA Intergenic Intergenic 23873 ENSMUSG00000106221.1 ENSMUSG00000106221 ENSMUST00000199807 Gm47301 miRNA Interval_60388 chr15 73443451 73443816 + 0 NA Intergenic Intergenic -14723 ENSMUSG00000116174.1 ENSMUSG00000116174 ENSMUST00000229262 Gm10362 processed_pseudogene Interval_66902 chr16 38428631 38428900 + 0 NA intron (ENSMUSG00000002847.7, intron 1 of 10) protein_coding-intron (ENSMUSG00000002847.7, intron 1 of 10) -10971 ENSMUSG00000002847.7 ENSMUSG00000002847 ENSMUST00000232224 Pla1a protein_coding Interval_131707 chr5 139435102 139435906 + 0 NA intron (ENSMUSG00000053553.11, intron 1 of 2) protein_coding-intron (ENSMUSG00000053553.11, intron 2 of 4) -8095 ENSMUSG00000095016.1 ENSMUSG00000095016 ENSMUST00000177923 Gm26285 snRNA Interval_101785 chr3 9552194 9553101 + 0 NA intron (ENSMUSG00000040209.12, intron 1 of 9) protein_coding-intron (ENSMUSG00000040209.12, intron 2 of 8) 12652 ENSMUSG00000040209.12 ENSMUSG00000040209 ENSMUST00000192832 Zfp704 protein_coding Interval_7302 chr1 128608020 128608238 + 0 NA Intergenic Intergenic -15836 ENSMUSG00000045382.6 ENSMUSG00000045382 ENSMUST00000142893 Cxcr4 protein_coding Interval_91922 chr2 51524142 51524600 + 0 NA Intergenic Intergenic -20604 ENSMUSG00000084334.1 ENSMUSG00000084334 ENSMUST00000120828 Gm13494 processed_pseudogene Interval_63107 chr15 99113387 99115059 + 0 NA Intergenic Intergenic -11693 ENSMUSG00000051934.5 ENSMUSG00000051934 ENSMUST00000229663 Spats2 protein_coding Interval_20513 chr10 118129115 118130449 + 0 NA Intergenic Intergenic -12029 ENSMUSG00000020212.14 ENSMUSG00000020212 ENSMUST00000217767 Mdm1 protein_coding Interval_84400 chr19 10626713 10627267 + 0 NA TTS (ENSMUSG00000024740.10) protein_coding-TTS (ENSMUSG00000024740.10) -7223 ENSMUSG00000043789.8 ENSMUSG00000043789 ENSMUST00000235831 Vwce protein_coding Interval_36237 chr12 40133087 40135019 + 0 NA exon (ENSMUSG00000002565.16, exon 1 of 16) protein_coding-exon (ENSMUSG00000002565.16, exon 1 of 16) 130 ENSMUSG00000002565.16 ENSMUSG00000002565 ENSMUST00000002640 Scin protein_coding Interval_66254 chr16 32667896 32668723 + 0 NA promoter-TSS (ENSMUSG00000022791.19) protein_coding-promoter-TSS (ENSMUSG00000022791.19) -112 ENSMUSG00000075265.4 ENSMUSG00000075265 ENSMUST00000141256 Tnk2os antisense Interval_12337 chr1 192190309 192191700 + 0 NA exon (ENSMUSG00000058248.12, exon 1 of 11) protein_coding-exon (ENSMUSG00000058248.12, exon 1 of 11) 53659 ENSMUSG00000097316.2 ENSMUSG00000097316 ENSMUST00000195083 Gm10516 antisense Interval_172120 chrX 7739027 7740482 + 0 NA intron (ENSMUSG00000031150.13, intron 1 of 1) protein_coding-intron (ENSMUSG00000031150.13, intron 1 of 9) -5850 ENSMUSG00000031150.13 ENSMUSG00000031150 ENSMUST00000139499 Ccdc120 protein_coding Interval_71806 chr17 26207539 26208285 + 0 NA promoter-TSS (ENSMUSG00000024186.15) protein_coding-promoter-TSS (ENSMUSG00000024186.15) -126 ENSMUSG00000073433.11 ENSMUSG00000073433 ENSMUST00000155556 Arhgdig protein_coding Interval_62523 chr15 94265401 94266044 + 0 NA Intergenic Intergenic 138536 ENSMUSG00000022449.14 ENSMUSG00000022449 ENSMUST00000128797 Adamts20 protein_coding Interval_2015 chr1 35904292 35904509 + 0 NA Intergenic Intergenic 24555 ENSMUSG00000102531.1 ENSMUSG00000102531 ENSMUST00000194261 1110002O04Rik lincRNA Interval_73090 chr17 34733072 34733304 + 0 NA exon (ENSMUSG00000073418.4, exon 29 of 41) protein_coding-exon (ENSMUSG00000073418.4, exon 29 of 41) -3923 ENSMUSG00000073418.4 ENSMUSG00000073418 ENSMUST00000173057 C4b protein_coding Interval_160316 chr8 108185731 108186762 + 0 NA intron (ENSMUSG00000038872.10, intron 3 of 4) protein_coding-intron (ENSMUSG00000038872.10, intron 2 of 15) 191687 ENSMUSG00000038872.10 ENSMUSG00000038872 ENSMUST00000043896 Zfhx3 protein_coding Interval_136123 chr6 51270201 51271911 + 0 NA Intergenic Intergenic -1146 ENSMUSG00000065505.1 ENSMUSG00000065505 ENSMUST00000083571 Mir148a miRNA Interval_42668 chr13 17803266 17805786 + 0 NA exon (ENSMUSG00000041297.8, exon 1 of 14) protein_coding-exon (ENSMUSG00000041297.8, exon 1 of 14) 571 ENSMUSG00000041297.8 ENSMUSG00000041297 ENSMUST00000221775 Cdk13 protein_coding Interval_103988 chr3 56256189 56256411 + 0 NA Intergenic Intergenic -88731 ENSMUSG00000105293.1 ENSMUSG00000105293 ENSMUST00000196328 Gm42843 TEC Interval_53526 chr14 58224853 58226150 + 0 NA Intergenic Intergenic -14720 ENSMUSG00000114562.1 ENSMUSG00000114562 ENSMUST00000226080 Gm18080 processed_pseudogene Interval_169870 chr9 102654156 102654448 + 0 NA Intergenic Intergenic 25790 ENSMUSG00000035048.13 ENSMUSG00000035048 ENSMUST00000190354 Anapc13 protein_coding Interval_161634 chr8 121697649 121698900 + 0 NA intron (ENSMUSG00000092329.1, intron 1 of 15) protein_coding-intron (ENSMUSG00000092329.1, intron 1 of 15) -24186 ENSMUSG00000110673.1 ENSMUSG00000110673 ENSMUST00000211931 Gm45833 lincRNA Interval_18739 chr10 89817335 89818301 + 0 NA intron (ENSMUSG00000019951.10, intron 3 of 3) protein_coding-intron (ENSMUSG00000019951.10, intron 20 of 20) 3628 ENSMUSG00000093967.1 ENSMUSG00000093967 ENSMUST00000179942 Gm26180 snRNA Interval_87977 chr19 57523180 57524333 + 0 NA intron (ENSMUSG00000118178.1, intron 1 of 3) lincRNA-intron (ENSMUSG00000118178.1, intron 1 of 3) 1499 ENSMUSG00000118178.1 ENSMUSG00000118178 ENSMUST00000235179 Gm32932 lincRNA Interval_137529 chr6 72910943 72911720 + 0 NA Intergenic Intergenic -11628 ENSMUSG00000055239.10 ENSMUSG00000055239 ENSMUST00000204708 Kcmf1 protein_coding Interval_21504 chr10 128977496 128977967 + 0 NA exon (ENSMUSG00000097691.1, exon 2 of 2) lincRNA-exon (ENSMUSG00000097691.1, exon 2 of 2) 6534 ENSMUSG00000097691.1 ENSMUSG00000097691 ENSMUST00000181142 9030616G12Rik lincRNA Interval_120935 chr4 151756097 151757084 + 0 NA intron (ENSMUSG00000014592.21, intron 2 of 7) protein_coding-intron (ENSMUSG00000014592.21, intron 3 of 23) 105114 ENSMUSG00000014592.21 ENSMUSG00000014592 ENSMUST00000135780 Camta1 protein_coding Interval_26021 chr11 53516889 53517316 + 0 NA Intergenic Intergenic -2825 ENSMUSG00000018398.18 ENSMUSG00000018398 ENSMUST00000145927 Septin8 protein_coding Interval_39513 chr12 89094065 89094269 + 0 NA intron (ENSMUSG00000066392.12, intron 2 of 19) protein_coding-intron (ENSMUSG00000066392.12, intron 2 of 19) 161194 ENSMUSG00000103136.1 ENSMUSG00000103136 ENSMUST00000194420 Gm37980 TEC Interval_100758 chr2 172393323 172394079 + 0 NA promoter-TSS (ENSMUSG00000074570.14) protein_coding-promoter-TSS (ENSMUSG00000074570.14) -200 ENSMUSG00000074570.14 ENSMUSG00000074570 ENSMUST00000228775 Cass4 protein_coding Interval_93903 chr2 78795200 78795530 + 0 NA Intergenic Intergenic 50088 ENSMUSG00000084101.1 ENSMUSG00000084101 ENSMUST00000120765 Gm17014 processed_pseudogene Interval_82190 chr18 68711488 68711696 + 0 NA Intergenic Intergenic -27808 ENSMUSG00000099300.1 ENSMUSG00000099300 ENSMUST00000183541 Mir6356 miRNA Interval_40822 chr12 108657146 108658020 + 0 NA intron (ENSMUSG00000021262.15, intron 3 of 12) protein_coding-intron (ENSMUSG00000021262.15, intron 3 of 13) -1037 ENSMUSG00000065436.1 ENSMUSG00000065436 ENSMUST00000083502 Mir342 miRNA Interval_160128 chr8 106614814 106615912 + 0 NA intron (ENSMUSG00000000303.12, intron 2 of 16) protein_coding-intron (ENSMUSG00000000303.12, intron 2 of 15) 11984 ENSMUSG00000000303.12 ENSMUSG00000000303 ENSMUST00000136580 Cdh1 protein_coding Interval_24315 chr11 32313687 32313915 + 0 NA Intergenic Intergenic 13732 ENSMUSG00000020295.1 ENSMUSG00000020295 ENSMUST00000020535 Hbq1a protein_coding Interval_15452 chr10 46826921 46827275 + 0 NA Intergenic Intergenic 11409 ENSMUSG00000065718.1 ENSMUSG00000065718 ENSMUST00000083784 Gm25650 snRNA Interval_145521 chr7 35347447 35348589 + 0 NA intron (ENSMUSG00000030494.13, intron 1 of 15) protein_coding-intron (ENSMUSG00000030494.13, intron 1 of 14) -34547 ENSMUSG00000030494.13 ENSMUSG00000030494 ENSMUST00000187997 Rhpn2 protein_coding Interval_40862 chr12 108941404 108942276 + 0 NA intron (ENSMUSG00000040877.16, intron 1 of 2) protein_coding-intron (ENSMUSG00000040877.16, intron 3 of 7) -19072 ENSMUSG00000113966.1 ENSMUSG00000113966 ENSMUST00000222257 Gm47980 TEC Interval_146396 chr7 45677162 45677351 + 0 NA TTS (ENSMUSG00000040364.8) protein_coding-TTS (ENSMUSG00000040364.8) -7173 ENSMUSG00000070564.15 ENSMUSG00000070564 ENSMUST00000183120 Ntn5 protein_coding Interval_67618 chr16 52858612 52859156 + 0 NA intron (ENSMUSG00000116689.1, intron 1 of 5) lincRNA-intron (ENSMUSG00000116689.1, intron 1 of 5) 29761 ENSMUSG00000116689.1 ENSMUSG00000116689 ENSMUST00000231678 4930405D01Rik lincRNA Interval_68872 chr16 87725905 87726808 + 0 NA intron (ENSMUSG00000025612.5, intron 4 of 4) protein_coding-intron (ENSMUSG00000025612.5, intron 4 of 4) 27352 ENSMUSG00000025612.5 ENSMUSG00000025612 ENSMUST00000156958 Bach1 protein_coding Interval_72229 chr17 28705026 28705250 + 0 NA intron (ENSMUSG00000053436.15, intron 2 of 12) protein_coding-intron (ENSMUSG00000053436.15, intron 1 of 11) 13693 ENSMUSG00000053436.15 ENSMUSG00000053436 ENSMUST00000151613 Mapk14 protein_coding Interval_59685 chr15 57957817 57958117 + 0 NA promoter-TSS (ENSMUSG00000022364.14) protein_coding-promoter-TSS (ENSMUSG00000022364.14) 41954 ENSMUSG00000022364.14 ENSMUSG00000022364 ENSMUST00000161329 Tbc1d31 protein_coding Interval_155358 chr8 32285984 32286355 + 0 NA intron (ENSMUSG00000062991.9, intron 1 of 12) protein_coding-intron (ENSMUSG00000062991.9, intron 1 of 8) 100040 ENSMUSG00000089370.1 ENSMUSG00000089370 ENSMUST00000158745 Gm22140 snRNA Interval_44585 chr13 46501794 46502831 + 0 NA promoter-TSS (ENSMUSG00000114752.1) bidirectional_promoter_lncRNA-promoter-TSS (ENSMUSG00000114752.1) 146 ENSMUSG00000021373.16 ENSMUSG00000021373 ENSMUST00000126687 Cap2 protein_coding Interval_16171 chr10 61204366 61205098 + 0 NA intron (ENSMUSG00000059901.12, intron 18 of 21) protein_coding-intron (ENSMUSG00000059901.12, intron 18 of 21) 29470 ENSMUSG00000020096.21 ENSMUSG00000020096 ENSMUST00000126831 Tbata protein_coding Interval_116434 chr4 111945312 111946035 + 0 NA intron (ENSMUSG00000078599.9, intron 6 of 6) protein_coding-intron (ENSMUSG00000078599.9, intron 6 of 6) 26118 ENSMUSG00000078599.9 ENSMUSG00000078599 ENSMUST00000129547 Skint8 protein_coding Interval_37281 chr12 64673363 64673634 + 0 NA Intergenic Intergenic -62904 ENSMUSG00000077703.1 ENSMUSG00000077703 ENSMUST00000104515 Gm24066 snoRNA Interval_23321 chr11 21348618 21348844 + 0 NA intron (ENSMUSG00000001891.16, intron 3 of 9) protein_coding-intron (ENSMUSG00000001891.16, intron 3 of 9) -4056 ENSMUSG00000089555.1 ENSMUSG00000089555 ENSMUST00000158930 Mir1933 miRNA Interval_109906 chr3 150794254 150794793 + 0 NA Intergenic Intergenic 205705 ENSMUSG00000105190.1 ENSMUSG00000105190 ENSMUST00000198573 Gm43470 lincRNA Interval_23702 chr11 24784376 24784740 + 0 NA Intergenic Intergenic -53836 ENSMUSG00000073103.2 ENSMUSG00000073103 ENSMUST00000101450 Gm10466 lincRNA Interval_83437 chr18 85503161 85504278 + 0 NA Intergenic Intergenic 213006 ENSMUSG00000117854.1 ENSMUSG00000117854 ENSMUST00000237113 Gm7612 processed_pseudogene Interval_98321 chr2 151000515 151001204 + 0 NA intron (ENSMUSG00000068115.13, intron 1 of 4) protein_coding-intron (ENSMUSG00000068115.13, intron 1 of 23) 8677 ENSMUSG00000082375.1 ENSMUSG00000082375 ENSMUST00000120236 Gm14141 processed_pseudogene Interval_19252 chr10 95793122 95793451 + 0 NA intron (ENSMUSG00000101517.6, intron 5 of 5) lincRNA-intron (ENSMUSG00000101517.6, intron 3 of 3) -24284 ENSMUSG00000112599.1 ENSMUSG00000112599 ENSMUST00000220129 Gm47719 lincRNA Interval_174812 chrX 167232647 167234362 + 0 NA Intergenic Intergenic -24355 ENSMUSG00000049775.16 ENSMUSG00000049775 ENSMUST00000112175 Tmsb4x protein_coding Interval_36840 chr12 54567569 54567924 + 0 NA Intergenic Intergenic -50667 ENSMUSG00000113947.1 ENSMUSG00000113947 ENSMUST00000223133 Gm10465 lincRNA Interval_167074 chr9 65074347 65074718 + 0 NA promoter-TSS (ENSMUSG00000032393.15) protein_coding-promoter-TSS (ENSMUSG00000032393.15) 19823 ENSMUSG00000111471.1 ENSMUSG00000111471 ENSMUST00000214559 Gm47350 antisense Interval_53714 chr14 61106501 61106806 + 0 NA Intergenic Intergenic 43226 ENSMUSG00000115627.1 ENSMUSG00000115627 ENSMUST00000227839 Gm41168 lincRNA Interval_102811 chr3 31267046 31267536 + 0 NA intron (ENSMUSG00000069072.9, intron 1 of 7) protein_coding-intron (ENSMUSG00000069072.9, intron 1 of 7) -8897 ENSMUSG00000069072.9 ENSMUSG00000069072 ENSMUST00000108245 Slc7a14 protein_coding Interval_63542 chr15 101924035 101924963 + 0 NA exon (ENSMUSG00000059668.6, exon 1 of 9) protein_coding-exon (ENSMUSG00000059668.6, exon 1 of 9) 236 ENSMUSG00000059668.6 ENSMUSG00000059668 ENSMUST00000023797 Krt4 protein_coding Interval_111479 chr4 21987014 21987216 + 0 NA intron (ENSMUSG00000028246.13, intron 3 of 3) protein_coding-intron (ENSMUSG00000028246.13, intron 5 of 5) 21074 ENSMUSG00000080997.1 ENSMUSG00000080997 ENSMUST00000118473 Gm11885 processed_pseudogene Interval_111279 chr4 16988595 16988987 + 0 NA Intergenic Intergenic 44869 ENSMUSG00000082994.1 ENSMUSG00000082994 ENSMUST00000121207 Gm11848 processed_pseudogene Interval_64695 chr16 14237151 14238210 + 0 NA intron (ENSMUSG00000018830.10, intron 10 of 41) protein_coding-intron (ENSMUSG00000018830.10, intron 9 of 40) 53685 ENSMUSG00000018830.10 ENSMUSG00000018830 ENSMUST00000230643 Myh11 protein_coding Interval_106784 chr3 100772906 100773501 + 0 NA Intergenic Intergenic -34490 ENSMUSG00000087759.1 ENSMUSG00000087759 ENSMUST00000157134 Gm23465 misc_RNA Interval_12474 chr1 193860418 193860615 + 0 NA Intergenic Intergenic -6493 ENSMUSG00000104182.1 ENSMUSG00000104182 ENSMUST00000194272 Gm21362 processed_pseudogene Interval_160668 chr8 111495359 111495592 + 0 NA intron (ENSMUSG00000031959.15, intron 7 of 26) protein_coding-intron (ENSMUSG00000031959.15, intron 7 of 26) -4722 ENSMUSG00000031959.15 ENSMUSG00000031959 ENSMUST00000212327 Wdr59 protein_coding Interval_146544 chr7 46748174 46749229 + 0 NA Intergenic Intergenic -3170 ENSMUSG00000057465.5 ENSMUSG00000057465 ENSMUST00000211766 Saa2 protein_coding Interval_168788 chr9 87077924 87078193 + 0 NA TTS (ENSMUSG00000032872.16) protein_coding-TTS (ENSMUSG00000032872.16) -49276 ENSMUSG00000099539.1 ENSMUSG00000099539 ENSMUST00000187559 Gm8282 processed_pseudogene Interval_24124 chr11 30573209 30573439 + 0 NA exon (ENSMUSG00000081887.1, exon 2 of 2) processed_pseudogene-exon (ENSMUSG00000081887.1, exon 2 of 2) 1130 ENSMUSG00000081887.1 ENSMUSG00000081887 ENSMUST00000121523 Gm12097 processed_pseudogene Interval_20197 chr10 115649339 115649593 + 0 NA Intergenic Intergenic -49138 ENSMUSG00000112099.1 ENSMUSG00000112099 ENSMUST00000219787 Gm8960 processed_pseudogene Interval_84204 chr19 8740660 8742202 + 0 NA promoter-TSS (ENSMUSG00000010110.17) protein_coding-promoter-TSS (ENSMUSG00000010110.17) -48 ENSMUSG00000010110.17 ENSMUSG00000010110 ENSMUST00000176570 Stx5a protein_coding Interval_51118 chr14 23592934 23593171 + 0 NA intron (ENSMUSG00000063142.15, intron 3 of 16) protein_coding-intron (ENSMUSG00000063142.15, intron 2 of 28) 32804 ENSMUSG00000100100.1 ENSMUSG00000100100 ENSMUST00000187439 Gm29626 antisense Interval_19622 chr10 105883330 105883753 + 0 NA Intergenic Intergenic 42037 ENSMUSG00000019897.8 ENSMUSG00000019897 ENSMUST00000155406 Ccdc59 protein_coding Interval_126177 chr5 81524339 81524610 + 0 NA intron (ENSMUSG00000037605.16, intron 8 of 12) protein_coding-intron (ENSMUSG00000037605.16, intron 6 of 24) -11252 ENSMUSG00000107375.1 ENSMUSG00000107375 ENSMUST00000200696 Gm43084 TEC Interval_23889 chr11 27721215 27721893 + 0 NA Intergenic Intergenic -161558 ENSMUSG00000084064.1 ENSMUSG00000084064 ENSMUST00000112483 Gm12079 processed_pseudogene Interval_140881 chr6 122560542 122561468 + 0 NA intron (ENSMUSG00000040627.14, intron 1 of 3) protein_coding-intron (ENSMUSG00000040627.14, intron 2 of 4) 520 ENSMUSG00000040627.14 ENSMUSG00000040627 ENSMUST00000160685 Aicda protein_coding Interval_89554 chr2 22704321 22704981 + 0 NA Intergenic Intergenic -8860 ENSMUSG00000083453.1 ENSMUSG00000083453 ENSMUST00000120235 Gm13338 processed_pseudogene Interval_65136 chr16 20103359 20104298 + 0 NA intron (ENSMUSG00000062901.3, intron 2 of 3) protein_coding-intron (ENSMUSG00000062901.3, intron 2 of 7) 6243 ENSMUSG00000062901.3 ENSMUSG00000062901 ENSMUST00000231842 Klhl24 protein_coding Interval_24584 chr11 34804903 34805837 + 0 NA Intergenic Intergenic 18581 ENSMUSG00000069910.2 ENSMUSG00000069910 ENSMUST00000148387 Spdl1 protein_coding Interval_121249 chr4 154393630 154394285 + 0 NA intron (ENSMUSG00000039410.16, intron 3 of 15) protein_coding-intron (ENSMUSG00000039410.16, intron 3 of 16) 57830 ENSMUSG00000097871.1 ENSMUSG00000097871 ENSMUST00000181143 B230104I21Rik lincRNA Interval_154674 chr8 22505808 22506615 + 0 NA promoter-TSS (ENSMUSG00000037656.9) protein_coding-promoter-TSS (ENSMUSG00000037656.9) -15 ENSMUSG00000037656.9 ENSMUSG00000037656 ENSMUST00000210388 Slc20a2 protein_coding Interval_47810 chr13 93323965 93324367 + 0 NA intron (ENSMUSG00000007617.18, intron 1 of 8) protein_coding-intron (ENSMUSG00000007617.18, intron 1 of 8) 6739 ENSMUSG00000113076.1 ENSMUSG00000113076 ENSMUST00000223326 Gm47088 TEC Interval_172736 chrX 48094620 48095108 + 0 NA Intergenic Intergenic -32880 ENSMUSG00000037005.16 ENSMUSG00000037005 ENSMUST00000156654 Xpnpep2 protein_coding Interval_47070 chr13 75293313 75293515 + 0 NA Intergenic Intergenic 94200 ENSMUSG00000113264.1 ENSMUSG00000113264 ENSMUST00000220533 Gm19095 processed_pseudogene Interval_153130 chr7 141539325 141540810 + 0 NA promoter-TSS (ENSMUSG00000025512.15) protein_coding-promoter-TSS (ENSMUSG00000025512.15) -235 ENSMUSG00000025512.15 ENSMUSG00000025512 ENSMUST00000133359 Chid1 protein_coding Interval_146436 chr7 45880618 45881481 + 0 NA promoter-TSS (ENSMUSG00000002778.14) protein_coding-promoter-TSS (ENSMUSG00000002778.14) -5418 ENSMUSG00000088555.1 ENSMUSG00000088555 ENSMUST00000157930 Gm22098 snRNA Interval_139314 chr6 98582396 98583376 + 0 NA intron (ENSMUSG00000107614.1, intron 2 of 4) lincRNA-intron (ENSMUSG00000107614.1, intron 2 of 4) -30779 ENSMUSG00000107929.1 ENSMUSG00000107929 ENSMUST00000204069 4930595L18Rik lincRNA Interval_168154 chr9 77602930 77603285 + 0 NA Intergenic Intergenic 25393 ENSMUSG00000093211.1 ENSMUSG00000093211 ENSMUST00000175470 Gm25250 miRNA Interval_41074 chr12 110991321 110992937 + 0 NA Intergenic Intergenic -2269 ENSMUSG00000113056.1 ENSMUSG00000113056 ENSMUST00000221849 6030440G07Rik lincRNA Interval_20393 chr10 117311455 117311693 + 0 NA Intergenic Intergenic -18706 ENSMUSG00000069515.6 ENSMUSG00000069515 ENSMUST00000092162 Lyz1 protein_coding Interval_2124 chr1 36588780 36589762 + 0 NA promoter-TSS (ENSMUSG00000046337.17) protein_coding-promoter-TSS (ENSMUSG00000046337.17) 11161 ENSMUSG00000046337.17 ENSMUSG00000046337 ENSMUST00000114981 Fam178b protein_coding Interval_172090 chrX 7318528 7319545 + 0 NA intron (ENSMUSG00000004317.14, intron 1 of 3) protein_coding-intron (ENSMUSG00000004317.14, intron 1 of 14) 56790 ENSMUSG00000046269.17 ENSMUSG00000046269 ENSMUST00000115744 Usp27x protein_coding Interval_14232 chr10 29243103 29243685 + 0 NA Intergenic Intergenic 31699 ENSMUSG00000004360.9 ENSMUSG00000004360 ENSMUST00000213489 9330159F19Rik protein_coding Interval_58238 chr15 31285242 31285697 + 0 NA Intergenic Intergenic 3380 ENSMUSG00000115418.1 ENSMUSG00000115418 ENSMUST00000228063 Gm49296 TEC Interval_41793 chr12 119346185 119346686 + 0 NA intron (ENSMUSG00000041886.7, intron 2 of 5) protein_coding-intron (ENSMUSG00000041886.7, intron 2 of 5) -6083 ENSMUSG00000113192.1 ENSMUSG00000113192 ENSMUST00000222541 Gm18032 processed_pseudogene Interval_89764 chr2 25271847 25273239 + 0 NA promoter-TSS (ENSMUSG00000026965.12) protein_coding-promoter-TSS (ENSMUSG00000026965.12) -105 ENSMUSG00000026966.6 ENSMUSG00000026966 ENSMUST00000127176 Ssna1 protein_coding Interval_158470 chr8 83903075 83903576 + 0 NA intron (ENSMUSG00000013033.16, intron 1 of 22) protein_coding-intron (ENSMUSG00000013033.16, intron 1 of 23) 2590 ENSMUSG00000013033.16 ENSMUSG00000013033 ENSMUST00000131018 Adgrl1 protein_coding Interval_80416 chr18 42016498 42017080 + 0 NA Intergenic Intergenic -17740 ENSMUSG00000073574.4 ENSMUSG00000073574 ENSMUST00000097591 Grxcr2 protein_coding Interval_49921 chr13 118323184 118324079 + 0 NA Intergenic Intergenic -62999 ENSMUSG00000097411.2 ENSMUSG00000097411 ENSMUST00000181168 B430218F22Rik antisense Interval_71553 chr17 24527419 24528459 + 0 NA promoter-TSS (ENSMUSG00000064768.1) snoRNA-promoter-TSS (ENSMUSG00000064768.1) -309 ENSMUSG00000093565.1 ENSMUSG00000093565 ENSMUST00000176215 Rab26os antisense Interval_155797 chr8 38386548 38386780 + 0 NA intron (ENSMUSG00000039539.13, intron 1 of 9) protein_coding-intron (ENSMUSG00000039539.13, intron 1 of 7) -134462 ENSMUSG00000065457.3 ENSMUSG00000065457 ENSMUST00000083523 Mir383 miRNA Interval_168612 chr9 84133922 84134523 + 0 NA Intergenic Intergenic -54133 ENSMUSG00000077666.1 ENSMUSG00000077666 ENSMUST00000104478 Gm26146 snRNA Interval_139161 chr6 96573050 96573311 + 0 NA intron (ENSMUSG00000059187.12, intron 3 of 4) protein_coding-intron (ENSMUSG00000059187.12, intron 2 of 3) -12316 ENSMUSG00000077598.1 ENSMUSG00000077598 ENSMUST00000104410 Gm26011 snRNA Interval_104364 chr3 64202945 64203204 + 0 NA intron (ENSMUSG00000093416.1, intron 2 of 3) unprocessed_pseudogene-intron (ENSMUSG00000093416.1, intron 2 of 3) 10603 ENSMUSG00000093416.1 ENSMUSG00000093416 ENSMUST00000176980 Gm18294 unprocessed_pseudogene Interval_20264 chr10 116528674 116529400 + 0 NA intron (ENSMUSG00000020166.15, intron 1 of 3) protein_coding-intron (ENSMUSG00000020166.15, intron 2 of 4) 2703 ENSMUSG00000093404.1 ENSMUSG00000093404 ENSMUST00000176664 Gm25190 miRNA Interval_143271 chr7 4887525 4887752 + 0 NA intron (ENSMUSG00000086784.2, intron 1 of 5) protein_coding-intron (ENSMUSG00000086784.2, intron 1 of 5) 10485 ENSMUSG00000086784.2 ENSMUSG00000086784 ENSMUST00000125249 Isoc2a protein_coding Interval_137587 chr6 73813914 73814242 + 0 NA Intergenic Intergenic 71771 ENSMUSG00000107646.1 ENSMUSG00000107646 ENSMUST00000203582 Gm44225 processed_pseudogene Interval_35721 chr12 28634343 28636614 + 0 NA exon (ENSMUSG00000061477.4, exon 3 of 7) protein_coding-exon (ENSMUSG00000061477.4, exon 3 of 7) -3088 ENSMUSG00000061477.4 ENSMUSG00000061477 ENSMUST00000222228 Rps7 protein_coding Interval_112009 chr4 33208747 33209923 + 0 NA promoter-TSS (ENSMUSG00000054679.8) protein_coding-promoter-TSS (ENSMUSG00000054679.8) 72 ENSMUSG00000054679.8 ENSMUSG00000054679 ENSMUST00000108159 Srsf12 protein_coding Interval_154800 chr8 23442847 23443722 + 0 NA intron (ENSMUSG00000031548.7, intron 2 of 2) protein_coding-intron (ENSMUSG00000031548.7, intron 2 of 2) 31782 ENSMUSG00000031548.7 ENSMUSG00000031548 ENSMUST00000033952 Sfrp1 protein_coding Interval_43152 chr13 24731747 24732852 + 0 NA exon (ENSMUSG00000036006.20, exon 23 of 23) protein_coding-exon (ENSMUSG00000036006.20, exon 23 of 23) -8933 ENSMUSG00000085861.1 ENSMUSG00000085861 ENSMUST00000136906 Armh2 protein_coding Interval_114831 chr4 86025982 86026277 + 0 NA intron (ENSMUSG00000066113.16, intron 2 of 3) protein_coding-intron (ENSMUSG00000066113.16, intron 2 of 3) 17365 ENSMUSG00000064687.1 ENSMUSG00000064687 ENSMUST00000082753 Gm25811 snRNA Interval_78365 chr18 12191411 12192178 + 0 NA exon (ENSMUSG00000024413.14, exon 24 of 25) protein_coding-exon (ENSMUSG00000024413.14, exon 24 of 25) -1974 ENSMUSG00000086935.1 ENSMUSG00000086935 ENSMUST00000153352 Gm15956 antisense Interval_157284 chr8 69009752 69009989 + 0 NA Intergenic Intergenic -8187 ENSMUSG00000110594.1 ENSMUSG00000110594 ENSMUST00000212717 Gm33103 lincRNA Interval_35799 chr12 30001979 30002937 + 0 NA TTS (ENSMUSG00000020674.17) protein_coding-TTS (ENSMUSG00000020674.17) -57199 ENSMUSG00000085472.1 ENSMUSG00000085472 ENSMUST00000138626 Gm15691 antisense Interval_154494 chr8 18658088 18658625 + 0 NA intron (ENSMUSG00000087300.1, intron 2 of 3) protein_coding-intron (ENSMUSG00000039842.15, intron 9 of 13) -1367 ENSMUSG00000090334.1 ENSMUSG00000090334 ENSMUST00000164712 Gm17149 processed_pseudogene Interval_140051 chr6 113660794 113662009 + 0 NA intron (ENSMUSG00000060477.14, intron 2 of 11) protein_coding-intron (ENSMUSG00000060477.14, intron 2 of 12) 17818 ENSMUSG00000107846.1 ENSMUSG00000107846 ENSMUST00000203466 Gm43963 TEC Interval_88136 chr19 59476165 59476382 + 0 NA Intergenic Intergenic 13471 ENSMUSG00000043969.4 ENSMUSG00000043969 ENSMUST00000174573 Emx2 protein_coding Interval_55137 chr14 78538606 78538833 + 0 NA Intergenic Intergenic -34748 ENSMUSG00000022016.17 ENSMUSG00000022016 ENSMUST00000226416 Akap11 protein_coding Interval_114599 chr4 82943416 82943636 + 0 NA intron (ENSMUSG00000059049.14, intron 7 of 7) protein_coding-intron (ENSMUSG00000059049.14, intron 23 of 35) -58378 ENSMUSG00000038192.5 ENSMUSG00000038192 ENSMUST00000048430 Cer1 protein_coding Interval_51693 chr14 31442628 31442843 + 0 NA Intergenic Intergenic 16490 ENSMUSG00000115283.1 ENSMUSG00000115283 ENSMUST00000227978 Gm49252 processed_pseudogene Interval_71160 chr17 20508052 20508846 + 0 NA Intergenic Intergenic 10291 ENSMUSG00000043537.2 ENSMUSG00000043537 ENSMUST00000061660 Vmn1r225 protein_coding Interval_118795 chr4 133752466 133754739 + 0 NA promoter-TSS (ENSMUSG00000007880.16) protein_coding-promoter-TSS (ENSMUSG00000007880.16) -32826 ENSMUSG00000007880.16 ENSMUSG00000007880 ENSMUST00000139709 Arid1a protein_coding Interval_166887 chr9 63687934 63688239 + 0 NA intron (ENSMUSG00000032402.12, intron 1 of 8) protein_coding-intron (ENSMUSG00000032402.12, intron 1 of 8) 23883 ENSMUSG00000032402.12 ENSMUSG00000032402 ENSMUST00000137065 Smad3 protein_coding Interval_155890 chr8 40655228 40655943 + 0 NA Intergenic Intergenic -19492 ENSMUSG00000046723.4 ENSMUSG00000046723 ENSMUST00000051614 Adam24 protein_coding Interval_125952 chr5 76176221 76178147 + 0 NA Intergenic Intergenic -19441 ENSMUSG00000083152.1 ENSMUSG00000083152 ENSMUST00000119356 Apc-ps1 transcribed_processed_pseudogene Interval_110511 chr4 3412645 3414096 + 0 NA Intergenic Intergenic 26524 ENSMUSG00000083489.1 ENSMUSG00000083489 ENSMUST00000118568 Gm11784 unprocessed_pseudogene Interval_51325 chr14 26449839 26450757 + 0 NA intron (ENSMUSG00000021870.17, intron 10 of 19) protein_coding-intron (ENSMUSG00000021870.17, intron 12 of 22) 13396 ENSMUSG00000021870.17 ENSMUSG00000021870 ENSMUST00000144737 Slmap protein_coding Interval_42416 chr13 13393015 13394480 + 0 NA promoter-TSS (ENSMUSG00000021306.11) protein_coding-promoter-TSS (ENSMUSG00000021306.11) -183 ENSMUSG00000021306.11 ENSMUSG00000021306 ENSMUST00000221498 Gpr137b protein_coding Interval_55234 chr14 79539233 79539459 + 0 NA TTS (ENSMUSG00000036461.16) protein_coding-TTS (ENSMUSG00000036461.16) 22946 ENSMUSG00000093684.2 ENSMUSG00000093684 ENSMUST00000176930 Gm27857 miRNA Interval_76394 chr17 79895078 79896519 + 0 NA intron (ENSMUSG00000059811.13, intron 1 of 1) protein_coding-intron (ENSMUSG00000059811.13, intron 1 of 12) 38774 ENSMUSG00000117458.1 ENSMUSG00000117458 ENSMUST00000234229 Gm6552 processed_pseudogene Interval_68002 chr16 62979621 62979972 + 0 NA Intergenic Intergenic -23642 ENSMUSG00000116574.1 ENSMUSG00000116574 ENSMUST00000231727 Gm18870 lincRNA Interval_61415 chr15 81475804 81477088 + 0 NA TTS (ENSMUSG00000022400.9) protein_coding-TTS (ENSMUSG00000022400.9) 9651 ENSMUSG00000022400.9 ENSMUSG00000022400 ENSMUST00000229991 Rbx1 protein_coding Interval_109743 chr3 146486536 146486846 + 0 NA exon (ENSMUSG00000028188.13, exon 5 of 5) protein_coding-exon (ENSMUSG00000028188.13, exon 5 of 5) -13418 ENSMUSG00000068523.12 ENSMUSG00000068523 ENSMUST00000119130 Gng5 protein_coding Interval_163345 chr9 20978281 20979603 + 0 NA Intergenic Intergenic -4964 ENSMUSG00000043895.6 ENSMUSG00000043895 ENSMUST00000214333 S1pr2 protein_coding Interval_22498 chr11 11147526 11149329 + 0 NA intron (ENSMUSG00000050830.17, intron 2 of 4) protein_coding-intron (ENSMUSG00000050830.17, intron 1 of 3) 7913 ENSMUSG00000088861.1 ENSMUSG00000088861 ENSMUST00000158236 Gm23065 rRNA Interval_95422 chr2 109109927 109110322 + 0 NA intron (ENSMUSG00000057234.9, intron 6 of 6) protein_coding-intron (ENSMUSG00000057234.9, intron 5 of 5) 38574 ENSMUSG00000076987.1 ENSMUSG00000076987 ENSMUST00000103799 Gm24115 miRNA Interval_92055 chr2 52903798 52905428 + 0 NA intron (ENSMUSG00000036053.17, intron 1 of 26) protein_coding-intron (ENSMUSG00000036053.17, intron 1 of 26) 46753 ENSMUSG00000036053.17 ENSMUSG00000036053 ENSMUST00000050719 Fmnl2 protein_coding Interval_119427 chr4 137583588 137584139 + 0 NA Intergenic Intergenic -1759 ENSMUSG00000094035.3 ENSMUSG00000094035 ENSMUST00000238941 Ldlrad2 protein_coding Interval_13800 chr10 22608993 22609529 + 0 NA Intergenic Intergenic -39747 ENSMUSG00000037490.5 ENSMUSG00000037490 ENSMUST00000159174 Slc2a12 protein_coding Interval_109507 chr3 143136810 143137070 + 0 NA intron (ENSMUSG00000106052.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000106052.1, intron 1 of 1) 28992 ENSMUSG00000106052.1 ENSMUSG00000106052 ENSMUST00000197030 Gm43614 lincRNA Interval_97885 chr2 144796803 144797437 + 0 NA Intergenic Intergenic -26536 ENSMUSG00000027431.5 ENSMUSG00000027431 ENSMUST00000028918 Scp2d1 protein_coding Interval_112968 chr4 46518463 46518977 + 0 NA intron (ENSMUSG00000039853.18, intron 3 of 4) protein_coding-intron (ENSMUSG00000039853.18, intron 4 of 5) -17181 ENSMUSG00000085990.1 ENSMUSG00000085990 ENSMUST00000132432 Gm16731 processed_transcript Interval_4555 chr1 74979863 74980615 + 0 NA intron (ENSMUSG00000026162.7, intron 2 of 4) protein_coding-intron (ENSMUSG00000026162.7, intron 2 of 4) 25987 ENSMUSG00000103145.1 ENSMUSG00000103145 ENSMUST00000194616 Gm37744 TEC Interval_126782 chr5 92904807 92906359 + 0 NA intron (ENSMUSG00000029381.16, intron 1 of 9) protein_coding-intron (ENSMUSG00000029381.16, intron 1 of 9) 49112 ENSMUSG00000029381.16 ENSMUSG00000029381 ENSMUST00000172752 Shroom3 protein_coding Interval_37474 chr12 69210123 69211252 + 0 NA TTS (ENSMUSG00000020974.6) protein_coding-TTS (ENSMUSG00000020974.6) -6230 ENSMUSG00000020974.6 ENSMUSG00000020974 ENSMUST00000221806 Pole2 protein_coding Interval_106321 chr3 95349414 95350308 + 0 NA exon (ENSMUSG00000015697.14, exon 4 of 22) protein_coding-exon (ENSMUSG00000015697.14, exon 4 of 22) -2923 ENSMUSG00000105860.1 ENSMUSG00000105860 ENSMUST00000199960 Gm42578 processed_pseudogene Interval_121312 chr4 154925247 154925807 + 0 NA intron (ENSMUSG00000042333.16, intron 2 of 6) protein_coding-intron (ENSMUSG00000042333.16, intron 3 of 7) 2550 ENSMUSG00000042333.16 ENSMUSG00000042333 ENSMUST00000145296 Tnfrsf14 protein_coding Interval_32422 chr11 107459944 107460505 + 0 NA intron (ENSMUSG00000040430.18, intron 1 of 9) protein_coding-intron (ENSMUSG00000040430.18, intron 1 of 9) -19304 ENSMUSG00000020720.13 ENSMUSG00000020720 ENSMUST00000106750 Psmd12 protein_coding Interval_149099 chr7 93194606 93195008 + 0 NA Intergenic Intergenic -15162 ENSMUSG00000087412.4 ENSMUSG00000087412 ENSMUST00000140687 Gm15501 transcribed_processed_pseudogene Interval_90176 chr2 28750034 28750397 + 0 NA intron (ENSMUSG00000026807.8, intron 2 of 2) protein_coding-intron (ENSMUSG00000026807.8, intron 10 of 12) 7965 ENSMUSG00000026807.8 ENSMUSG00000026807 ENSMUST00000137588 Ak8 protein_coding Interval_16066 chr10 60455387 60456041 + 0 NA intron (ENSMUSG00000012819.15, intron 12 of 65) protein_coding-intron (ENSMUSG00000012819.15, intron 12 of 66) 55810 ENSMUSG00000090439.3 ENSMUSG00000090439 ENSMUST00000218360 Gm17455 protein_coding Interval_159751 chr8 100863287 100863516 + 0 NA Intergenic Intergenic -137046 ENSMUSG00000109769.1 ENSMUSG00000109769 ENSMUST00000210760 Gm39232 lincRNA Interval_8416 chr1 139000737 139001570 + 0 NA intron (ENSMUSG00000056268.15, intron 1 of 20) protein_coding-intron (ENSMUSG00000056268.15, intron 1 of 20) -9084 ENSMUSG00000085361.2 ENSMUSG00000085361 ENSMUST00000140747 Gm16305 processed_pseudogene Interval_33855 chr11 119034071 119034673 + 0 NA Intergenic Intergenic 6539 ENSMUSG00000025578.9 ENSMUSG00000025578 ENSMUST00000143831 Cbx8 protein_coding Interval_16026 chr10 60191429 60192154 + 0 NA intron (ENSMUSG00000057337.13, intron 1 of 2) protein_coding-intron (ENSMUSG00000057337.13, intron 2 of 3) 2448 ENSMUSG00000057337.13 ENSMUSG00000057337 ENSMUST00000167915 Chst3 protein_coding Interval_144411 chr7 24994215 24994890 + 0 NA exon (ENSMUSG00000040907.15, exon 9 of 23) protein_coding-exon (ENSMUSG00000040907.15, exon 9 of 23) -6885 ENSMUSG00000099258.1 ENSMUSG00000099258 ENSMUST00000184595 Mir7047 miRNA Interval_86482 chr19 40994708 40996477 + 0 NA Intergenic Intergenic -1057 ENSMUSG00000061132.13 ENSMUSG00000061132 ENSMUST00000134568 Blnk protein_coding Interval_4027 chr1 66713786 66714084 + 0 NA intron (ENSMUSG00000026005.15, intron 3 of 3) protein_coding-intron (ENSMUSG00000026005.15, intron 2 of 5) 13028 ENSMUSG00000026005.15 ENSMUSG00000026005 ENSMUST00000190404 Rpe protein_coding Interval_137893 chr6 83173218 83173492 + 0 NA promoter-TSS (ENSMUSG00000085782.2) antisense-promoter-TSS (ENSMUSG00000085782.2) -600 ENSMUSG00000085782.2 ENSMUSG00000085782 ENSMUST00000145420 Gm15624 antisense Interval_94660 chr2 93113860 93114603 + 0 NA Intergenic Intergenic -15987 ENSMUSG00000087559.1 ENSMUSG00000087559 ENSMUST00000150159 Gm13802 lincRNA Interval_62397 chr15 91771830 91772572 + 0 NA promoter-TSS (ENSMUSG00000036273.15) protein_coding-promoter-TSS (ENSMUSG00000036273.15) -42427 ENSMUSG00000036273.15 ENSMUSG00000036273 ENSMUST00000172797 Lrrk2 protein_coding Interval_71309 chr17 22080833 22081550 + 0 NA Intergenic Intergenic -11303 ENSMUSG00000117234.1 ENSMUSG00000117234 ENSMUST00000232840 Gm7818 processed_pseudogene Interval_168744 chr9 86597665 86598270 + 0 NA intron (ENSMUSG00000032418.15, intron 4 of 7) protein_coding-intron (ENSMUSG00000032418.15, intron 10 of 13) 20737 ENSMUSG00000032418.15 ENSMUSG00000032418 ENSMUST00000189847 Me1 protein_coding Interval_112710 chr4 44300487 44301790 + 0 NA intron (ENSMUSG00000035683.13, intron 1 of 17) protein_coding-intron (ENSMUSG00000035683.13, intron 1 of 17) -2430 ENSMUSG00000035683.13 ENSMUSG00000035683 ENSMUST00000137759 Melk protein_coding Interval_34398 chr12 3855906 3856106 + 0 NA intron (ENSMUSG00000020661.15, intron 3 of 22) protein_coding-intron (ENSMUSG00000020661.15, intron 3 of 22) 6238 ENSMUSG00000073242.4 ENSMUSG00000073242 ENSMUST00000144896 Dnmt3aos antisense Interval_2848 chr1 46422019 46422872 + 0 NA Intergenic Intergenic 7943 ENSMUSG00000101262.1 ENSMUSG00000101262 ENSMUST00000188705 Gm8326 processed_pseudogene Interval_22974 chr11 18274704 18274935 + 0 NA Intergenic Intergenic 52852 ENSMUSG00000081302.1 ENSMUSG00000081302 ENSMUST00000119030 Gm12020 processed_pseudogene Interval_125336 chr5 66274410 66274629 + 0 NA intron (ENSMUSG00000029206.13, intron 4 of 10) protein_coding-intron (ENSMUSG00000029206.13, intron 4 of 12) 14622 ENSMUSG00000029206.13 ENSMUSG00000029206 ENSMUST00000031109 Nsun7 protein_coding Interval_123923 chr5 36573501 36574714 + 0 NA promoter-TSS (ENSMUSG00000029192.17) protein_coding-promoter-TSS (ENSMUSG00000029192.17) 39632 ENSMUSG00000106797.1 ENSMUSG00000106797 ENSMUST00000174019 Gm42936 processed_transcript Interval_13774 chr10 21979436 21982942 + 0 NA intron (ENSMUSG00000019970.15, intron 1 of 11) protein_coding-intron (ENSMUSG00000019970.15, intron 3 of 13) 2517 ENSMUSG00000019970.15 ENSMUSG00000019970 ENSMUST00000135195 Sgk1 protein_coding Interval_86879 chr19 44582364 44583169 + 0 NA Intergenic Intergenic 19916 ENSMUSG00000036450.4 ENSMUSG00000036450 ENSMUST00000040455 Hif1an protein_coding Interval_109503 chr3 143031108 143031463 + 0 NA intron (ENSMUSG00000105652.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000105652.1, intron 1 of 2) 13625 ENSMUSG00000105652.1 ENSMUSG00000105652 ENSMUST00000197683 4930519L02Rik lincRNA Interval_75550 chr17 67961778 67962210 + 0 NA intron (ENSMUSG00000024043.13, intron 1 of 17) protein_coding-intron (ENSMUSG00000024043.13, intron 1 of 17) -88946 ENSMUSG00000024043.13 ENSMUSG00000024043 ENSMUST00000170581 Arhgap28 protein_coding Interval_165796 chr9 53227785 53228004 + 0 NA intron (ENSMUSG00000053289.8, intron 7 of 17) protein_coding-intron (ENSMUSG00000053289.8, intron 7 of 17) 20159 ENSMUSG00000053289.8 ENSMUSG00000053289 ENSMUST00000065630 Ddx10 protein_coding Interval_142871 chr6 146601574 146601944 + 0 NA TTS (ENSMUSG00000040234.16) protein_coding-TTS (ENSMUSG00000040234.16) 23819 ENSMUSG00000040242.14 ENSMUSG00000040242 ENSMUST00000160697 Fgfr1op2 protein_coding Interval_163658 chr9 23399530 23400031 + 0 NA intron (ENSMUSG00000031963.8, intron 12 of 14) protein_coding-intron (ENSMUSG00000031963.8, intron 12 of 14) 176494 ENSMUSG00000031963.8 ENSMUSG00000031963 ENSMUST00000214050 Bmper protein_coding Interval_136803 chr6 60521364 60521708 + 0 NA Intergenic Intergenic 31580 ENSMUSG00000108192.1 ENSMUSG00000108192 ENSMUST00000203151 Gm44410 lincRNA Interval_69862 chr16 97658850 97659863 + 0 NA Intergenic Intergenic -92019 ENSMUSG00000000385.8 ENSMUSG00000000385 ENSMUST00000232141 Tmprss2 protein_coding Interval_29720 chr11 86399626 86400166 + 0 NA Intergenic Intergenic -8930 ENSMUSG00000088091.1 ENSMUSG00000088091 ENSMUST00000157466 Gm23667 rRNA Interval_159360 chr8 94057242 94058220 + 0 NA TTS (ENSMUSG00000033009.15) protein_coding-TTS (ENSMUSG00000033009.15) 8950 ENSMUSG00000110499.1 ENSMUSG00000110499 ENSMUST00000211865 Gm45873 TEC Interval_753 chr1 10679592 10679899 + 0 NA intron (ENSMUSG00000042501.12, intron 1 of 9) protein_coding-intron (ENSMUSG00000042501.12, intron 1 of 10) -15378 ENSMUSG00000081417.1 ENSMUSG00000081417 ENSMUST00000119252 Gm15603 processed_pseudogene Interval_97303 chr2 133350920 133352209 + 0 NA Intergenic Intergenic 20640 ENSMUSG00000098578.1 ENSMUSG00000098578 ENSMUST00000184570 Gm27449 snRNA Interval_43005 chr13 22843768 22844787 + 0 NA TTS (ENSMUSG00000083297.1) unprocessed_pseudogene-TTS (ENSMUSG00000083297.1) 1756 ENSMUSG00000083297.1 ENSMUSG00000083297 ENSMUST00000121050 Vmn1r-ps114 unprocessed_pseudogene Interval_87711 chr19 55325862 55326284 + 0 NA intron (ENSMUSG00000024983.10, intron 2 of 3) protein_coding-intron (ENSMUSG00000024983.10, intron 2 of 7) 9746 ENSMUSG00000024983.10 ENSMUSG00000024983 ENSMUST00000224396 Vti1a protein_coding Interval_131742 chr5 139587656 139588323 + 0 NA Intergenic Intergenic 44091 ENSMUSG00000029546.12 ENSMUSG00000029546 ENSMUST00000174792 Uncx protein_coding Interval_24865 chr11 40572918 40573188 + 0 NA Intergenic Intergenic -2528 ENSMUSG00000082390.1 ENSMUSG00000082390 ENSMUST00000120460 Gm12136 processed_pseudogene Interval_104357 chr3 64012562 64012876 + 0 NA intron (ENSMUSG00000027823.9, intron 13 of 15) protein_coding-intron (ENSMUSG00000027823.9, intron 13 of 15) 36613 ENSMUSG00000027823.9 ENSMUSG00000027823 ENSMUST00000029405 Gmps protein_coding Interval_100732 chr2 172196945 172198079 + 0 NA Intergenic Intergenic 20730 ENSMUSG00000105205.1 ENSMUSG00000105205 ENSMUST00000200362 Gm44301 miRNA Interval_18300 chr10 84707810 84708823 + 0 NA intron (ENSMUSG00000034453.8, intron 23 of 27) protein_coding-intron (ENSMUSG00000034453.8, intron 23 of 27) -53922 ENSMUSG00000020037.15 ENSMUSG00000020037 ENSMUST00000095388 Rfx4 protein_coding Interval_173376 chrX 85677055 85677307 + 0 NA Intergenic Intergenic -39257 ENSMUSG00000081933.1 ENSMUSG00000081933 ENSMUST00000121559 Gm14767 processed_pseudogene Interval_117885 chr4 126874644 126874845 + 0 NA intron (ENSMUSG00000042446.16, intron 20 of 23) protein_coding-intron (ENSMUSG00000042446.16, intron 26 of 29) -13632 ENSMUSG00000088984.1 ENSMUSG00000088984 ENSMUST00000158359 Gm25604 snoRNA Interval_134592 chr6 29816173 29816400 + 0 NA intron (ENSMUSG00000029772.17, intron 1 of 17) protein_coding-intron (ENSMUSG00000029772.17, intron 1 of 16) -60393 ENSMUSG00000029772.17 ENSMUSG00000029772 ENSMUST00000128837 Ahcyl2 protein_coding Interval_142216 chr6 139014664 139014946 + 0 NA Intergenic Intergenic -122322 ENSMUSG00000108178.1 ENSMUSG00000108178 ENSMUST00000204132 Gm44267 TEC Interval_101530 chr3 4146307 4147236 + 0 NA Intergenic Intergenic -64947 ENSMUSG00000091223.2 ENSMUSG00000091223 ENSMUST00000170943 Gm8775 processed_pseudogene Interval_101329 chr2 180481780 180482579 + 0 NA Intergenic Intergenic -18048 ENSMUSG00000027568.9 ENSMUSG00000027568 ENSMUST00000170448 Ntsr1 protein_coding Interval_26445 chr11 57907562 57907972 + 0 NA Intergenic Intergenic 26871 ENSMUSG00000084223.1 ENSMUSG00000084223 ENSMUST00000119500 Gm12244 processed_pseudogene Interval_117797 chr4 126277792 126279145 + 0 NA Intergenic Intergenic 16068 ENSMUSG00000028847.8 ENSMUSG00000028847 ENSMUST00000126786 Trappc3 protein_coding Interval_59522 chr15 54999015 55000388 + 0 NA Intergenic Intergenic -12847 ENSMUSG00000115245.1 ENSMUSG00000115245 ENSMUST00000227829 4930478E11Rik lincRNA Interval_76555 chr17 81027564 81028494 + 0 NA intron (ENSMUSG00000024246.9, intron 9 of 9) protein_coding-intron (ENSMUSG00000024246.9, intron 9 of 9) 37053 ENSMUSG00000024246.9 ENSMUSG00000024246 ENSMUST00000234801 Thumpd2 protein_coding Interval_97324 chr2 134432502 134432773 + 0 NA Intergenic Intergenic 121670 ENSMUSG00000027261.2 ENSMUSG00000027261 ENSMUST00000140794 Hao1 protein_coding Interval_169444 chr9 97365734 97366559 + 0 NA exon (ENSMUSG00000032451.6, exon 2 of 5) protein_coding-exon (ENSMUSG00000032451.6, exon 2 of 5) 3812 ENSMUSG00000032451.6 ENSMUSG00000032451 ENSMUST00000035026 Trim42 protein_coding Interval_26099 chr11 54162839 54163729 + 0 NA Intergenic Intergenic 4358 ENSMUSG00000036045.6 ENSMUSG00000036045 ENSMUST00000125096 Gm12221 processed_pseudogene Interval_12108 chr1 189786476 189787804 + 0 NA intron (ENSMUSG00000026604.17, intron 2 of 9) protein_coding-intron (ENSMUSG00000026604.17, intron 1 of 17) -40090 ENSMUSG00000102248.1 ENSMUSG00000102248 ENSMUST00000192214 Gm30280 processed_pseudogene Interval_22896 chr11 17182962 17184195 + 0 NA intron (ENSMUSG00000078970.5, intron 1 of 12) protein_coding-intron (ENSMUSG00000033953.10, intron 2 of 5) 1471 ENSMUSG00000078970.5 ENSMUSG00000078970 ENSMUST00000046955 Wdr92 protein_coding Interval_3606 chr1 59947704 59948713 + 0 NA intron (ENSMUSG00000041040.12, intron 1 of 7) protein_coding-intron (ENSMUSG00000041040.12, intron 1 of 7) 4256 ENSMUSG00000100901.1 ENSMUSG00000100901 ENSMUST00000188150 Gm18829 processed_pseudogene Interval_173405 chrX 89115694 89115910 + 0 NA Intergenic Intergenic -3306 ENSMUSG00000081033.1 ENSMUSG00000081033 ENSMUST00000119378 Gm14797 processed_pseudogene Interval_54254 chr14 66920828 66921992 + 0 NA TTS (ENSMUSG00000046204.14) protein_coding-TTS (ENSMUSG00000046204.14) 10168 ENSMUSG00000046204.14 ENSMUSG00000046204 ENSMUST00000165831 Pnma2 protein_coding Interval_119084 chr4 135419882 135421279 + 0 NA intron (ENSMUSG00000059713.12, intron 2 of 3) protein_coding-intron (ENSMUSG00000059713.12, intron 2 of 4) -3947 ENSMUSG00000076123.1 ENSMUSG00000076123 ENSMUST00000102169 Mir700 miRNA Interval_65654 chr16 24850617 24851140 + 0 NA intron (ENSMUSG00000033306.15, intron 1 of 3) protein_coding-intron (ENSMUSG00000033306.15, intron 9 of 12) 5703 ENSMUSG00000033306.15 ENSMUSG00000033306 ENSMUST00000232546 Lpp protein_coding Interval_13140 chr10 12354881 12355731 + 0 NA Intergenic Intergenic -8104 ENSMUSG00000065096.1 ENSMUSG00000065096 ENSMUST00000083162 Gm23680 snRNA Interval_54590 chr14 70888764 70891719 + 0 NA promoter-TSS (ENSMUSG00000022103.10) protein_coding-promoter-TSS (ENSMUSG00000022103.10) -287 ENSMUSG00000022103.10 ENSMUSG00000022103 ENSMUST00000227633 Gfra2 protein_coding Interval_12665 chr10 4227836 4228476 + 0 NA Intergenic Intergenic -15042 ENSMUSG00000111266.1 ENSMUSG00000111266 ENSMUST00000213553 Gm30570 lincRNA Interval_77273 chr17 87704876 87705071 + 0 NA intron (ENSMUSG00000024151.13, intron 1 of 3) protein_coding-intron (ENSMUSG00000024151.13, intron 8 of 15) 8432 ENSMUSG00000024151.13 ENSMUSG00000024151 ENSMUST00000174703 Msh2 protein_coding Interval_129069 chr5 117222644 117222881 + 0 NA intron (ENSMUSG00000061288.13, intron 6 of 6) protein_coding-intron (ENSMUSG00000061288.13, intron 10 of 19) 26207 ENSMUSG00000084587.1 ENSMUSG00000084587 ENSMUST00000122638 n-R5s174 rRNA Interval_71850 chr17 26502161 26503634 + 0 NA exon (ENSMUSG00000118107.1, exon 1 of 3) lincRNA-exon (ENSMUSG00000118107.1, exon 1 of 3) 5575 ENSMUSG00000024190.7 ENSMUSG00000024190 ENSMUST00000011196 Dusp1 protein_coding Interval_102380 chr3 22884890 22885075 + 0 NA Intergenic Intergenic 72775 ENSMUSG00000102233.1 ENSMUSG00000102233 ENSMUST00000194174 Gm37889 TEC Interval_105713 chr3 88713568 88716809 + 0 NA Intergenic Intergenic -1711 ENSMUSG00000028057.14 ENSMUSG00000028057 ENSMUST00000172187 Rit1 protein_coding Interval_159238 chr8 92059918 92060136 + 0 NA Intergenic Intergenic 20110 ENSMUSG00000065636.1 ENSMUSG00000065636 ENSMUST00000083702 Gm24254 snRNA Interval_150541 chr7 112179973 112180701 + 0 NA Intergenic Intergenic -21280 ENSMUSG00000030772.6 ENSMUSG00000030772 ENSMUST00000033036 Dkk3 protein_coding Interval_34376 chr12 3695914 3696416 + 0 NA intron (ENSMUSG00000071454.13, intron 9 of 20) protein_coding-intron (ENSMUSG00000071454.13, intron 9 of 18) -3013 ENSMUSG00000077830.1 ENSMUSG00000077830 ENSMUST00000104640 Gm26050 miRNA Interval_50881 chr14 20428412 20428979 + 0 NA intron (ENSMUSG00000039543.16, intron 2 of 2) protein_coding-intron (ENSMUSG00000039543.16, intron 10 of 27) 1293 ENSMUSG00000039543.16 ENSMUSG00000039543 ENSMUST00000143940 Cfap70 protein_coding Interval_108507 chr3 127816453 127817965 + 0 NA promoter-TSS (ENSMUSG00000074238.6) protein_coding-promoter-TSS (ENSMUSG00000074238.6) 15762 ENSMUSG00000105804.1 ENSMUSG00000105804 ENSMUST00000200664 Gm43654 TEC Interval_74085 chr17 46503466 46503921 + 0 NA intron (ENSMUSG00000040327.16, intron 10 of 17) protein_coding-intron (ENSMUSG00000040327.16, intron 33 of 41) -2622 ENSMUSG00000040327.16 ENSMUSG00000040327 ENSMUST00000183163 Cul9 protein_coding Interval_102982 chr3 34005029 34008461 + 0 NA Intergenic Intergenic -1282 ENSMUSG00000044434.5 ENSMUSG00000044434 ENSMUST00000060997 Gm9791 processed_pseudogene Interval_145572 chr7 35674199 35674570 + 0 NA Intergenic Intergenic -31340 ENSMUSG00000030417.15 ENSMUSG00000030417 ENSMUST00000130340 Pdcd5 protein_coding Interval_84399 chr19 10624926 10625306 + 0 NA promoter-TSS (ENSMUSG00000024740.10) protein_coding-promoter-TSS (ENSMUSG00000024740.10) 6122 ENSMUSG00000024740.10 ENSMUSG00000024740 ENSMUST00000236279 Ddb1 protein_coding Interval_109012 chr3 135006337 135006605 + 0 NA Intergenic Intergenic 35014 ENSMUSG00000104539.1 ENSMUSG00000104539 ENSMUST00000197626 Gm43035 processed_pseudogene Interval_138579 chr6 89533636 89534578 + 0 NA intron (ENSMUSG00000030086.16, intron 4 of 5) protein_coding-intron (ENSMUSG00000030086.16, intron 4 of 7) -6652 ENSMUSG00000107680.1 ENSMUSG00000107680 ENSMUST00000205126 Gm43903 TEC Interval_96911 chr2 129419369 129421635 + 0 NA Intergenic Intergenic -41106 ENSMUSG00000081888.1 ENSMUSG00000081888 ENSMUST00000122326 Spcs2-ps unprocessed_pseudogene Interval_18957 chr10 93391271 93391677 + 0 NA Intergenic Intergenic 5799 ENSMUSG00000111316.1 ENSMUSG00000111316 ENSMUST00000214319 Gm47344 processed_pseudogene Interval_51230 chr14 25377581 25379092 + 0 NA intron (ENSMUSG00000097601.2, intron 1 of 1) lincRNA-intron (ENSMUSG00000097601.2, intron 1 of 1) 1273 ENSMUSG00000097601.2 ENSMUSG00000097601 ENSMUST00000181582 Gm26660 lincRNA Interval_99960 chr2 166115655 166116142 + 0 NA intron (ENSMUSG00000006800.14, intron 4 of 21) protein_coding-intron (ENSMUSG00000006800.14, intron 3 of 20) 39765 ENSMUSG00000006800.14 ENSMUSG00000006800 ENSMUST00000133395 Sulf2 protein_coding Interval_27401 chr11 67364660 67365361 + 0 NA TTS (ENSMUSG00000084567.1) misc_RNA-TTS (ENSMUSG00000084567.1) 225 ENSMUSG00000060180.12 ENSMUSG00000060180 ENSMUST00000181027 Myh13 protein_coding Interval_60344 chr15 73051752 73052371 + 0 NA intron (ENSMUSG00000047921.17, intron 3 of 16) protein_coding-intron (ENSMUSG00000047921.17, intron 2 of 21) 8984 ENSMUSG00000047921.17 ENSMUSG00000047921 ENSMUST00000228960 Trappc9 protein_coding Interval_74454 chr17 50761012 50762441 + 0 NA intron (ENSMUSG00000023923.10, intron 18 of 21) protein_coding-intron (ENSMUSG00000023923.10, intron 18 of 21) 63038 ENSMUSG00000044645.8 ENSMUSG00000044645 ENSMUST00000061681 Gm7334 processed_pseudogene Interval_5406 chr1 88562256 88562782 + 0 NA TTS (ENSMUSG00000100798.1) lincRNA-TTS (ENSMUSG00000100798.1) 11002 ENSMUSG00000100798.1 ENSMUSG00000100798 ENSMUST00000189394 Gm19589 lincRNA Interval_27591 chr11 68904582 68906226 + 0 NA TTS (ENSMUSG00000060938.14) protein_coding-TTS (ENSMUSG00000060938.14) -2616 ENSMUSG00000088910.1 ENSMUSG00000088910 ENSMUST00000158285 Gm22608 snRNA Interval_146000 chr7 42996794 42997210 + 0 NA Intergenic Intergenic -21763 ENSMUSG00000091528.9 ENSMUSG00000091528 ENSMUST00000166914 Vmn2r126 protein_coding Interval_15092 chr10 42513914 42514357 + 0 NA intron (ENSMUSG00000019804.12, intron 1 of 2) protein_coding-intron (ENSMUSG00000019804.12, intron 1 of 3) 12105 ENSMUSG00000019804.12 ENSMUSG00000019804 ENSMUST00000105499 Snx3 protein_coding Interval_156033 chr8 43068749 43069214 + 0 NA Intergenic Intergenic -16606 ENSMUSG00000109627.1 ENSMUSG00000109627 ENSMUST00000209715 Gm45590 processed_pseudogene Interval_20285 chr10 116668581 116668873 + 0 NA Intergenic Intergenic -5864 ENSMUSG00000097104.1 ENSMUSG00000097104 ENSMUST00000181656 Gm26579 lincRNA Interval_106000 chr3 90536984 90537752 + 0 NA promoter-TSS (ENSMUSG00000074457.10) protein_coding-promoter-TSS (ENSMUSG00000074457.10) -1920 ENSMUSG00000074457.10 ENSMUSG00000074457 ENSMUST00000098910 S100a16 protein_coding Interval_24864 chr11 40568366 40568912 + 0 NA TTS (ENSMUSG00000082390.1) processed_pseudogene-TTS (ENSMUSG00000082390.1) 1886 ENSMUSG00000082390.1 ENSMUSG00000082390 ENSMUST00000120460 Gm12136 processed_pseudogene Interval_64781 chr16 15665354 15665937 + 0 NA intron (ENSMUSG00000022672.8, intron 12 of 21) protein_coding-intron (ENSMUSG00000022672.8, intron 12 of 85) 27779 ENSMUSG00000022672.8 ENSMUSG00000022672 ENSMUST00000023352 Prkdc protein_coding Interval_118295 chr4 130121766 130122848 + 0 NA intron (ENSMUSG00000028779.16, intron 3 of 5) protein_coding-intron (ENSMUSG00000028779.16, intron 2 of 4) 15321 ENSMUSG00000028778.15 ENSMUSG00000028778 ENSMUST00000164887 Hcrtr1 protein_coding Interval_128931 chr5 116146071 116147034 + 0 NA intron (ENSMUSG00000043913.14, intron 7 of 13) protein_coding-intron (ENSMUSG00000043913.14, intron 7 of 13) 22938 ENSMUSG00000086655.1 ENSMUSG00000086655 ENSMUST00000127792 C330018A13Rik antisense Interval_145843 chr7 40191663 40192153 + 0 NA TTS (ENSMUSG00000056836.8) processed_pseudogene-TTS (ENSMUSG00000056836.8) 971 ENSMUSG00000056836.8 ENSMUSG00000056836 ENSMUST00000154478 Gm6851 processed_pseudogene Interval_138451 chr6 88301555 88301757 + 0 NA intron (ENSMUSG00000033216.9, intron 4 of 7) protein_coding-intron (ENSMUSG00000033216.9, intron 4 of 6) 51950 ENSMUSG00000107472.1 ENSMUSG00000107472 ENSMUST00000203631 Gm44265 sense_intronic Interval_5702 chr1 91043322 91044824 + 0 NA intron (ENSMUSG00000026305.15, intron 1 of 12) protein_coding-intron (ENSMUSG00000026305.15, intron 1 of 12) -9513 ENSMUSG00000026305.15 ENSMUSG00000026305 ENSMUST00000187532 Lrrfip1 protein_coding Interval_46987 chr13 73944596 73944836 + 0 NA promoter-TSS (ENSMUSG00000057649.6) protein_coding-promoter-TSS (ENSMUSG00000057649.6) 6078 ENSMUSG00000057649.6 ENSMUSG00000057649 ENSMUST00000221324 Brd9 protein_coding Interval_56866 chr14 122564689 122565103 + 0 NA intron (ENSMUSG00000041650.15, intron 4 of 6) protein_coding-intron (ENSMUSG00000041650.15, intron 4 of 23) -17788 ENSMUSG00000041650.15 ENSMUSG00000041650 ENSMUST00000138836 Pcca protein_coding Interval_107889 chr3 116614452 116614942 + 0 NA promoter-TSS (ENSMUSG00000033439.12) protein_coding-promoter-TSS (ENSMUSG00000033439.12) -11226 ENSMUSG00000027959.14 ENSMUSG00000027959 ENSMUST00000198747 Sass6 protein_coding Interval_59244 chr15 49588814 49589646 + 0 NA Intergenic Intergenic 51035 ENSMUSG00000065760.1 ENSMUSG00000065760 ENSMUST00000083826 Gm23848 snRNA Interval_91572 chr2 43668453 43668669 + 0 NA intron (ENSMUSG00000026866.16, intron 10 of 12) protein_coding-intron (ENSMUSG00000026866.16, intron 10 of 13) -2369 ENSMUSG00000026866.16 ENSMUSG00000026866 ENSMUST00000148855 Kynu protein_coding Interval_173100 chrX 71623785 71624311 + 0 NA Intergenic Intergenic -39918 ENSMUSG00000056380.13 ENSMUSG00000056380 ENSMUST00000131554 Gpr50 protein_coding Interval_74807 chr17 56660513 56661061 + 0 NA intron (ENSMUSG00000040828.10, intron 8 of 11) protein_coding-intron (ENSMUSG00000040828.10, intron 18 of 21) 9005 ENSMUSG00000040828.10 ENSMUSG00000040828 ENSMUST00000233947 Catsperd protein_coding Interval_109563 chr3 144477768 144478138 + 0 NA intron (ENSMUSG00000040151.9, intron 1 of 6) protein_coding-intron (ENSMUSG00000040151.9, intron 1 of 6) 19219 ENSMUSG00000104903.1 ENSMUSG00000104903 ENSMUST00000196451 Gm43707 sense_intronic Interval_74713 chr17 56117061 56118400 + 0 NA promoter-TSS (ENSMUSG00000011305.11) protein_coding-promoter-TSS (ENSMUSG00000011305.11) -432 ENSMUSG00000011305.11 ENSMUSG00000011305 ENSMUST00000113072 Plin5 protein_coding Interval_33787 chr11 118503150 118504056 + 0 NA intron (ENSMUSG00000025576.17, intron 3 of 7) protein_coding-intron (ENSMUSG00000025576.17, intron 7 of 14) 3750 ENSMUSG00000025576.17 ENSMUSG00000025576 ENSMUST00000134774 Rbfox3 protein_coding Interval_131994 chr5 141999904 142000450 + 0 NA intron (ENSMUSG00000039683.16, intron 16 of 44) protein_coding-intron (ENSMUSG00000039683.16, intron 12 of 40) -282929 ENSMUSG00000097947.1 ENSMUSG00000097947 ENSMUST00000182990 Gm26970 processed_pseudogene Interval_129335 chr5 119246555 119247198 + 0 NA Intergenic Intergenic -46858 ENSMUSG00000107334.1 ENSMUSG00000107334 ENSMUST00000200918 Gm7538 lincRNA Interval_62052 chr15 86116455 86116794 + 0 NA intron (ENSMUSG00000035900.18, intron 3 of 18) protein_coding-intron (ENSMUSG00000035900.18, intron 3 of 18) -26564 ENSMUSG00000089680.1 ENSMUSG00000089680 ENSMUST00000159271 Gm15722 antisense Interval_83820 chr19 4867637 4868088 + 0 NA exon (ENSMUSG00000006457.4, exon 10 of 21) protein_coding-exon (ENSMUSG00000006457.4, exon 10 of 21) -4304 ENSMUSG00000006457.4 ENSMUSG00000006457 ENSMUST00000138811 Actn3 protein_coding Interval_63827 chr16 3830795 3831004 + 0 NA promoter-TSS (ENSMUSG00000059043.2) protein_coding-promoter-TSS (ENSMUSG00000059043.2) 1 ENSMUSG00000059043.2 ENSMUSG00000059043 ENSMUST00000080917 Olfr15 protein_coding Interval_36539 chr12 49032385 49032644 + 0 NA Intergenic Intergenic 22631 ENSMUSG00000064616.1 ENSMUSG00000064616 ENSMUST00000082682 Gm26454 snRNA Interval_124109 chr5 38366532 38367673 + 0 NA intron (ENSMUSG00000005107.13, intron 12 of 13) protein_coding-intron (ENSMUSG00000005107.13, intron 9 of 10) 22667 ENSMUSG00000106932.1 ENSMUSG00000106932 ENSMUST00000201983 4930487D11Rik lincRNA Interval_107967 chr3 117862014 117862630 + 0 NA intron (ENSMUSG00000028007.13, intron 1 of 7) protein_coding-intron (ENSMUSG00000028007.13, intron 1 of 8) -13670 ENSMUSG00000093054.1 ENSMUSG00000093054 ENSMUST00000175313 Gm24811 miRNA Interval_111344 chr4 19518353 19518545 + 0 NA TTS (ENSMUSG00000028228.5) protein_coding-TTS (ENSMUSG00000028228.5) -3670 ENSMUSG00000089090.1 ENSMUSG00000089090 ENSMUST00000158465 Gm25655 misc_RNA Interval_17315 chr10 75808528 75809147 + 0 NA Intergenic Intergenic -11106 ENSMUSG00000001663.10 ENSMUSG00000001663 ENSMUST00000139724 Gstt1 protein_coding Interval_86690 chr19 42652868 42653058 + 0 NA Intergenic Intergenic -44432 ENSMUSG00000025185.14 ENSMUSG00000025185 ENSMUST00000166128 Loxl4 protein_coding Interval_129971 chr5 123377411 123377807 + 0 NA Intergenic Intergenic 10610 ENSMUSG00000104830.1 ENSMUSG00000104830 ENSMUST00000200118 5830487J09Rik processed_transcript Interval_138034 chr6 84480803 84481818 + 0 NA Intergenic Intergenic -54566 ENSMUSG00000107926.1 ENSMUSG00000107926 ENSMUST00000204799 4930504D19Rik lincRNA Interval_50631 chr14 16849928 16850370 + 0 NA Intergenic Intergenic -96510 ENSMUSG00000114890.1 ENSMUSG00000114890 ENSMUST00000223705 Tpi-rs9 processed_pseudogene Interval_20877 chr10 121689488 121690156 + 0 NA exon (ENSMUSG00000047642.15, exon 12 of 13) protein_coding-exon (ENSMUSG00000047642.15, exon 12 of 13) 15213 ENSMUSG00000112526.1 ENSMUSG00000112526 ENSMUST00000220180 Gm35865 lincRNA Interval_47807 chr13 93243127 93243376 + 0 NA Intergenic Intergenic -50530 ENSMUSG00000098092.1 ENSMUSG00000098092 ENSMUST00000182524 Gm2076 processed_pseudogene Interval_88512 chr2 5738456 5738904 + 0 NA Intergenic Intergenic -24177 ENSMUSG00000039145.16 ENSMUSG00000039145 ENSMUST00000155927 Camk1d protein_coding Interval_137227 chr6 70429804 70430072 + 0 NA exon (ENSMUSG00000105687.1, exon 1 of 1) processed_pseudogene-exon (ENSMUSG00000105687.1, exon 1 of 1) 887 ENSMUSG00000105687.1 ENSMUSG00000105687 ENSMUST00000199935 Gm6157 processed_pseudogene Interval_86922 chr19 44895169 44895950 + 0 NA Intergenic Intergenic 44550 ENSMUSG00000117967.1 ENSMUSG00000117967 ENSMUST00000236477 Gm5246 processed_pseudogene Interval_107034 chr3 103071789 103071994 + 0 NA exon (ENSMUSG00000104671.1, exon 1 of 1) lincRNA-exon (ENSMUSG00000104671.1, exon 1 of 1) 717 ENSMUSG00000104671.1 ENSMUSG00000104671 ENSMUST00000196302 Gm43062 lincRNA Interval_85858 chr19 32437087 32437701 + 0 NA Intergenic Intergenic 3630 ENSMUSG00000118329.1 ENSMUSG00000118329 ENSMUST00000235317 Gm9563 processed_pseudogene Interval_104391 chr3 65174606 65175176 + 0 NA intron (ENSMUSG00000104093.1, intron 3 of 4) protein_coding-intron (ENSMUSG00000027827.17, intron 1 of 13) 127794 ENSMUSG00000104093.1 ENSMUSG00000104093 ENSMUST00000195489 A330015K06Rik antisense Interval_54788 chr14 75060264 75060925 + 0 NA Intergenic Intergenic 23972 ENSMUSG00000034959.8 ENSMUSG00000034959 ENSMUST00000228689 Rubcnl protein_coding Interval_94607 chr2 92613720 92614479 + 0 NA exon (ENSMUSG00000027221.5, exon 3 of 3) protein_coding-exon (ENSMUSG00000027221.5, exon 3 of 3) 14392 ENSMUSG00000027221.5 ENSMUSG00000027221 ENSMUST00000065797 Chst1 protein_coding Interval_29964 chr11 88406598 88407143 + 0 NA intron (ENSMUSG00000069769.13, intron 3 of 5) protein_coding-intron (ENSMUSG00000069769.13, intron 8 of 13) 26644 ENSMUSG00000084411.2 ENSMUSG00000084411 ENSMUST00000120278 Gm11510 processed_pseudogene Interval_63937 chr16 4658581 4659300 + 0 NA intron (ENSMUSG00000039637.15, intron 7 of 24) protein_coding-intron (ENSMUSG00000039637.15, intron 7 of 27) 18972 ENSMUSG00000039646.5 ENSMUSG00000039646 ENSMUST00000138044 Vasn protein_coding Interval_130086 chr5 124176106 124177335 + 0 NA intron (ENSMUSG00000029406.15, intron 2 of 24) protein_coding-intron (ENSMUSG00000029406.15, intron 1 of 23) -18922 ENSMUSG00000089842.2 ENSMUSG00000089842 ENSMUST00000198466 Pitpnm2os2 antisense Interval_51561 chr14 30183096 30183312 + 0 NA intron (ENSMUSG00000015968.18, intron 5 of 40) protein_coding-intron (ENSMUSG00000015968.18, intron 5 of 48) -24534 ENSMUSG00000114650.1 ENSMUSG00000114650 ENSMUST00000224405 Gm47570 processed_pseudogene Interval_91451 chr2 38964327 38964900 + 0 NA TTS (ENSMUSG00000046618.7) protein_coding-TTS (ENSMUSG00000046618.7) -9334 ENSMUSG00000084184.1 ENSMUSG00000084184 ENSMUST00000122466 Gm13474 unprocessed_pseudogene Interval_126099 chr5 77372483 77373662 + 0 NA intron (ENSMUSG00000036256.13, intron 1 of 4) protein_coding-intron (ENSMUSG00000036256.13, intron 1 of 4) -13527 ENSMUSG00000106828.1 ENSMUSG00000106828 ENSMUST00000202460 Gm34648 antisense Interval_63753 chr15 103247322 103249478 + 0 NA TTS (ENSMUSG00000058794.12) protein_coding-TTS (ENSMUSG00000058794.12) 3116 ENSMUSG00000058794.12 ENSMUSG00000058794 ENSMUST00000132438 Nfe2 protein_coding Interval_55318 chr14 82492199 82492729 + 0 NA Intergenic Intergenic -107935 ENSMUSG00000089266.1 ENSMUSG00000089266 ENSMUST00000158641 Gm22891 snRNA Interval_105233 chr3 84038964 84040786 + 0 NA exon (ENSMUSG00000033767.14, exon 1 of 1) protein_coding-exon (ENSMUSG00000033767.14, exon 1 of 1) 23577 ENSMUSG00000103261.1 ENSMUSG00000103261 ENSMUST00000192340 Gm36981 TEC Interval_153980 chr8 11608881 11609117 + 0 NA Intergenic Intergenic 15627 ENSMUSG00000031508.14 ENSMUSG00000031508 ENSMUST00000210876 Ankrd10 protein_coding Interval_161589 chr8 121424333 121424856 + 0 NA intron (ENSMUSG00000097783.2, intron 1 of 1) protein_coding-intron (ENSMUSG00000092329.1, intron 1 of 15) 3356 ENSMUSG00000097783.2 ENSMUSG00000097783 ENSMUST00000180597 Gm26747 lincRNA Interval_25352 chr11 46605221 46605468 + 0 NA Intergenic Intergenic 23917 ENSMUSG00000064010.12 ENSMUSG00000064010 ENSMUST00000109227 Dppa1 protein_coding Interval_23074 chr11 19739717 19739979 + 0 NA Intergenic Intergenic 10218 ENSMUSG00000083601.1 ENSMUSG00000083601 ENSMUST00000118065 Gm12028 processed_pseudogene Interval_76924 chr17 84995342 84995651 + 0 NA intron (ENSMUSG00000061130.13, intron 1 of 6) protein_coding-intron (ENSMUSG00000061130.13, intron 2 of 5) 1816 ENSMUSG00000061130.13 ENSMUSG00000061130 ENSMUST00000234851 Ppm1b protein_coding Interval_49977 chr13 119234676 119235261 + 0 NA Intergenic Intergenic 34636 ENSMUSG00000105411.1 ENSMUSG00000105411 ENSMUST00000199467 Gm44488 miRNA Interval_111629 chr4 24850252 24851504 + 0 NA promoter-TSS (ENSMUSG00000040387.16) protein_coding-promoter-TSS (ENSMUSG00000040387.16) -47298 ENSMUSG00000028261.13 ENSMUSG00000028261 ENSMUST00000151249 Ndufaf4 protein_coding Interval_116206 chr4 108672753 108673025 + 0 NA intron (ENSMUSG00000034557.14, intron 12 of 17) protein_coding-intron (ENSMUSG00000034557.14, intron 10 of 15) -35448 ENSMUSG00000091985.1 ENSMUSG00000091985 ENSMUST00000170933 Gm17354 lincRNA Interval_16320 chr10 62188297 62188809 + 0 NA intron (ENSMUSG00000037031.10, intron 5 of 5) protein_coding-intron (ENSMUSG00000037031.10, intron 7 of 7) 5674 ENSMUSG00000099185.1 ENSMUSG00000099185 ENSMUST00000184761 Mir7662 miRNA Interval_30161 chr11 90009861 90010176 + 0 NA Intergenic Intergenic -7124 ENSMUSG00000020553.8 ENSMUSG00000020553 ENSMUST00000020864 Pctp protein_coding Interval_62197 chr15 88733047 88734651 + 0 NA intron (ENSMUSG00000022387.17, intron 1 of 12) protein_coding-intron (ENSMUSG00000022387.17, intron 1 of 7) -14694 ENSMUSG00000022387.17 ENSMUSG00000022387 ENSMUST00000139515 Brd1 protein_coding Interval_128494 chr5 113643189 113644417 + 0 NA promoter-TSS (ENSMUSG00000042190.12) protein_coding-promoter-TSS (ENSMUSG00000042190.12) -1160 ENSMUSG00000085713.1 ENSMUSG00000085713 ENSMUST00000141710 Gm15736 antisense Interval_19521 chr10 101967716 101968003 + 0 NA intron (ENSMUSG00000019888.16, intron 3 of 8) protein_coding-intron (ENSMUSG00000019888.16, intron 2 of 5) -191046 ENSMUSG00000019888.16 ENSMUSG00000019888 ENSMUST00000120748 Mgat4c protein_coding Interval_55828 chr14 101040628 101040949 + 0 NA Intergenic Intergenic 159542 ENSMUSG00000042888.10 ENSMUSG00000042888 ENSMUST00000187304 Prr30 protein_coding Interval_135775 chr6 47244071 47245569 + 0 NA intron (ENSMUSG00000039419.17, intron 1 of 3) protein_coding-intron (ENSMUSG00000039419.17, intron 1 of 3) 188269 ENSMUSG00000107853.1 ENSMUSG00000107853 ENSMUST00000203098 Gm18584 processed_pseudogene Interval_154480 chr8 18585730 18586620 + 0 NA Intergenic Intergenic -9401 ENSMUSG00000039842.15 ENSMUSG00000039842 ENSMUST00000141244 Mcph1 protein_coding Interval_27103 chr11 62914704 62914930 + 0 NA intron (ENSMUSG00000014177.10, intron 2 of 2) protein_coding-intron (ENSMUSG00000014177.10, intron 2 of 2) 6775 ENSMUSG00000086677.1 ENSMUSG00000086677 ENSMUST00000148598 Tvp23bos antisense Interval_23987 chr11 29199800 29199987 + 0 NA intron (ENSMUSG00000020463.15, intron 2 of 2) protein_coding-intron (ENSMUSG00000020463.15, intron 8 of 15) 26146 ENSMUSG00000020463.15 ENSMUSG00000020463 ENSMUST00000148759 Ppp4r3b protein_coding Interval_70298 chr17 8316141 8316522 + 0 NA intron (ENSMUSG00000117569.1, intron 1 of 5) protein_coding-intron (ENSMUSG00000073468.12, intron 1 of 5) 5222 ENSMUSG00000117569.1 ENSMUSG00000117569 ENSMUST00000140890 Gm49987 processed_transcript Interval_114049 chr4 62744844 62745668 + 0 NA Intergenic Intergenic -17719 ENSMUSG00000086139.1 ENSMUSG00000086139 ENSMUST00000143618 Gm11211 lincRNA Interval_119465 chr4 137752723 137753004 + 0 NA intron (ENSMUSG00000028766.10, intron 5 of 5) protein_coding-intron (ENSMUSG00000028766.10, intron 5 of 11) 29328 ENSMUSG00000028766.10 ENSMUSG00000028766 ENSMUST00000143757 Alpl protein_coding Interval_11782 chr1 185394783 185395068 + 0 NA intron (ENSMUSG00000026615.14, intron 13 of 19) protein_coding-intron (ENSMUSG00000026615.14, intron 13 of 31) 27335 ENSMUSG00000026615.14 ENSMUSG00000026615 ENSMUST00000192049 Eprs protein_coding Interval_22609 chr11 12268908 12269252 + 0 NA intron (ENSMUSG00000020173.17, intron 4 of 4) protein_coding-intron (ENSMUSG00000020173.17, intron 9 of 14) -53195 ENSMUSG00000086584.8 ENSMUSG00000086584 ENSMUST00000174550 Gm12002 antisense Interval_88805 chr2 11311831 11312279 + 0 NA Intergenic Intergenic 7819 ENSMUSG00000102196.1 ENSMUSG00000102196 ENSMUST00000195716 Gm38171 lincRNA Interval_126283 chr5 86051552 86051755 + 0 NA intron (ENSMUSG00000029253.12, intron 4 of 6) protein_coding-intron (ENSMUSG00000029253.12, intron 4 of 18) 13898 ENSMUSG00000029253.12 ENSMUSG00000029253 ENSMUST00000199141 Cenpc1 protein_coding Interval_153997 chr8 11743935 11745602 + 0 NA intron (ENSMUSG00000031511.16, intron 2 of 4) protein_coding-intron (ENSMUSG00000031511.16, intron 1 of 17) 6147 ENSMUSG00000110394.1 ENSMUSG00000110394 ENSMUST00000209225 Gm18991 processed_pseudogene Interval_140996 chr6 124066015 124066674 + 0 NA TTS (ENSMUSG00000096630.2) protein_coding-TTS (ENSMUSG00000096630.2) -7730 ENSMUSG00000089307.1 ENSMUSG00000089307 ENSMUST00000158682 Gm24843 snoRNA Interval_14138 chr10 28011854 28012393 + 0 NA Intergenic Intergenic 54067 ENSMUSG00000112432.1 ENSMUSG00000112432 ENSMUST00000218855 Gm18507 processed_pseudogene Interval_54587 chr14 70854538 70855497 + 0 NA intron (ENSMUSG00000099528.1, intron 1 of 3) lincRNA-intron (ENSMUSG00000099528.1, intron 1 of 3) 2084 ENSMUSG00000099528.1 ENSMUSG00000099528 ENSMUST00000190896 2410012E07Rik lincRNA Interval_94476 chr2 91490417 91490651 + 0 NA exon (ENSMUSG00000027253.15, exon 21 of 38) protein_coding-exon (ENSMUSG00000027253.15, exon 21 of 38) 14215 ENSMUSG00000027253.15 ENSMUSG00000027253 ENSMUST00000151907 Lrp4 protein_coding Interval_118868 chr4 134167253 134167450 + 0 NA TTS (ENSMUSG00000098693.1) snoRNA-TTS (ENSMUSG00000098693.1) 544 ENSMUSG00000098693.1 ENSMUSG00000098693 ENSMUST00000184419 Gm27619 snoRNA Interval_97584 chr2 140130307 140130532 + 0 NA intron (ENSMUSG00000045624.15, intron 10 of 13) protein_coding-intron (ENSMUSG00000045624.15, intron 10 of 13) -20017 ENSMUSG00000083110.1 ENSMUSG00000083110 ENSMUST00000117344 Gm14073 processed_pseudogene Interval_50133 chr14 8180482 8182154 + 0 NA Intergenic Intergenic -14222 ENSMUSG00000021748.9 ENSMUSG00000021748 ENSMUST00000224690 Pdhb protein_coding Interval_172646 chrX 39331917 39332604 + 0 NA Intergenic Intergenic -14007 ENSMUSG00000079619.2 ENSMUSG00000079619 ENSMUST00000115114 Cypt15 protein_coding Interval_99982 chr2 166229059 166229661 + 0 NA Intergenic Intergenic -20733 ENSMUSG00000085046.1 ENSMUSG00000085046 ENSMUST00000129407 Gm11467 lincRNA Interval_8391 chr1 138752211 138752778 + 0 NA Intergenic Intergenic -62649 ENSMUSG00000103152.1 ENSMUSG00000103152 ENSMUST00000194108 Gm8790 processed_pseudogene Interval_37154 chr12 59039334 59041460 + 0 NA promoter-TSS (ENSMUSG00000065232.1) snRNA-promoter-TSS (ENSMUSG00000065232.1) 62 ENSMUSG00000065232.1 ENSMUSG00000065232 ENSMUST00000083298 Gm22973 snRNA Interval_69698 chr16 95647768 95648589 + 0 NA Intergenic Intergenic -54277 ENSMUSG00000022895.16 ENSMUSG00000022895 ENSMUST00000233578 Ets2 protein_coding Interval_43546 chr13 32993717 32994832 + 0 NA Intergenic Intergenic -2788 ENSMUSG00000114185.1 ENSMUSG00000114185 ENSMUST00000221299 Gm47662 lincRNA Interval_145464 chr7 34961678 34961884 + 0 NA intron (ENSMUSG00000063931.14, intron 2 of 6) protein_coding-intron (ENSMUSG00000063931.14, intron 7 of 14) -7729 ENSMUSG00000063931.14 ENSMUSG00000063931 ENSMUST00000160459 Pepd protein_coding Interval_142673 chr6 144950166 144950516 + 0 NA Intergenic Intergenic 87847 ENSMUSG00000088867.1 ENSMUSG00000088867 ENSMUST00000158242 Gm23071 rRNA Interval_50481 chr14 13950539 13951229 + 0 NA promoter-TSS (ENSMUSG00000053453.9) protein_coding-promoter-TSS (ENSMUSG00000053453.9) 6747 ENSMUSG00000053453.9 ENSMUSG00000053453 ENSMUST00000226008 Thoc7 protein_coding Interval_5638 chr1 90486664 90487036 + 0 NA Intergenic Intergenic -32349 ENSMUSG00000101997.1 ENSMUSG00000101997 ENSMUST00000187630 Gm28722 lincRNA Interval_39361 chr12 86903707 86906832 + 0 NA Intergenic Intergenic -20471 ENSMUSG00000034168.7 ENSMUSG00000034168 ENSMUST00000038422 Irf2bpl protein_coding Interval_5960 chr1 93542711 93543716 + 0 NA intron (ENSMUSG00000034066.13, intron 2 of 12) protein_coding-intron (ENSMUSG00000034066.13, intron 2 of 26) 11398 ENSMUSG00000103854.1 ENSMUSG00000103854 ENSMUST00000194919 Gm37250 TEC Interval_107242 chr3 104855901 104857526 + 0 NA intron (ENSMUSG00000070372.11, intron 1 of 5) protein_coding-intron (ENSMUSG00000070372.11, intron 1 of 9) -8354 ENSMUSG00000045576.16 ENSMUSG00000045576 ENSMUST00000140457 St7l protein_coding Interval_36634 chr12 51666317 51666574 + 0 NA intron (ENSMUSG00000020954.16, intron 1 of 15) protein_coding-intron (ENSMUSG00000020954.16, intron 1 of 17) -22647 ENSMUSG00000020954.16 ENSMUSG00000020954 ENSMUST00000218212 Strn3 protein_coding Interval_82951 chr18 79951820 79952492 + 0 NA Intergenic Intergenic -6850 ENSMUSG00000117813.1 ENSMUSG00000117813 ENSMUST00000237811 Gm5823 processed_pseudogene Interval_146999 chr7 57605360 57605690 + 0 NA intron (ENSMUSG00000033676.13, intron 3 of 8) protein_coding-intron (ENSMUSG00000033676.13, intron 3 of 8) 15007 ENSMUSG00000033676.13 ENSMUSG00000033676 ENSMUST00000136033 Gabrb3 protein_coding Interval_47488 chr13 85234824 85235059 + 0 NA intron (ENSMUSG00000021549.14, intron 9 of 24) protein_coding-intron (ENSMUSG00000021549.14, intron 9 of 24) 23619 ENSMUSG00000021548.10 ENSMUSG00000021548 ENSMUST00000166932 Ccnh protein_coding Interval_50653 chr14 17559440 17560944 + 0 NA Intergenic Intergenic 210930 ENSMUSG00000114281.1 ENSMUSG00000114281 ENSMUST00000225878 Gm48320 processed_pseudogene Interval_168077 chr9 75969947 75970159 + 0 NA TTS (ENSMUSG00000093025.1) snRNA-TTS (ENSMUSG00000093025.1) 974 ENSMUSG00000093025.1 ENSMUSG00000093025 ENSMUST00000175284 Gm25300 snRNA Interval_77217 chr17 87418643 87420170 + 0 NA intron (ENSMUSG00000036557.8, intron 3 of 3) protein_coding-intron (ENSMUSG00000036557.8, intron 3 of 6) 8229 ENSMUSG00000036557.8 ENSMUSG00000036557 ENSMUST00000189487 Stpg4 protein_coding Interval_20882 chr10 121718851 121719620 + 0 NA Intergenic Intergenic -14200 ENSMUSG00000112526.1 ENSMUSG00000112526 ENSMUST00000220180 Gm35865 lincRNA Interval_158969 chr8 88309722 88310379 + 0 NA intron (ENSMUSG00000031659.13, intron 6 of 27) protein_coding-intron (ENSMUSG00000031659.13, intron 6 of 27) 9671 ENSMUSG00000031659.13 ENSMUSG00000031659 ENSMUST00000210688 Adcy7 protein_coding Interval_60794 chr15 76816751 76818707 + 0 NA intron (ENSMUSG00000033697.16, intron 1 of 2) protein_coding-intron (ENSMUSG00000033697.16, intron 1 of 11) 441 ENSMUSG00000033697.16 ENSMUSG00000033697 ENSMUST00000176736 Arhgap39 protein_coding Interval_98306 chr2 150913416 150913707 + 0 NA intron (ENSMUSG00000027454.10, intron 2 of 4) protein_coding-intron (ENSMUSG00000027454.10, intron 2 of 6) 8161 ENSMUSG00000027454.10 ENSMUSG00000027454 ENSMUST00000123217 Gins1 protein_coding Interval_62687 chr15 96268753 96268941 + 0 NA intron (ENSMUSG00000097536.2, intron 1 of 6) lincRNA-intron (ENSMUSG00000097536.2, intron 1 of 6) -14860 ENSMUSG00000097619.8 ENSMUSG00000097619 ENSMUST00000229950 4833422M21Rik processed_transcript Interval_28568 chr11 76763095 76763964 + 0 NA promoter-TSS (ENSMUSG00000010392.8) protein_coding-promoter-TSS (ENSMUSG00000010392.8) 38 ENSMUSG00000010392.8 ENSMUSG00000010392 ENSMUST00000137767 Gosr1 protein_coding Interval_172297 chrX 12599770 12600006 + 0 NA intron (ENSMUSG00000031007.2, intron 3 of 8) protein_coding-intron (ENSMUSG00000031007.2, intron 3 of 8) 12087 ENSMUSG00000031007.2 ENSMUSG00000031007 ENSMUST00000033313 Atp6ap2 protein_coding Interval_109920 chr3 151647420 151648195 + 0 NA Intergenic Intergenic 39464 ENSMUSG00000065138.1 ENSMUSG00000065138 ENSMUST00000083204 Gm24458 snRNA Interval_146995 chr7 57473971 57474420 + 0 NA intron (ENSMUSG00000055078.7, intron 5 of 9) protein_coding-intron (ENSMUSG00000055078.7, intron 5 of 9) 35864 ENSMUSG00000055078.7 ENSMUSG00000055078 ENSMUST00000206734 Gabra5 protein_coding Interval_152727 chr7 136937817 136938998 + 0 NA intron (ENSMUSG00000054612.4, intron 1 of 4) protein_coding-intron (ENSMUSG00000054612.4, intron 1 of 4) 17466 ENSMUSG00000109721.1 ENSMUSG00000109721 ENSMUST00000210484 Gm45280 TEC Interval_165208 chr9 45348675 45350388 + 0 NA Intergenic Intergenic -20654 ENSMUSG00000066705.7 ENSMUSG00000066705 ENSMUST00000215281 Fxyd6 protein_coding Interval_127692 chr5 106709387 106710210 + 0 NA Intergenic Intergenic -13227 ENSMUSG00000098302.1 ENSMUSG00000098302 ENSMUST00000149128 Gm28039 processed_transcript Interval_88291 chr2 3423822 3424676 + 0 NA promoter-TSS (ENSMUSG00000026648.18) protein_coding-promoter-TSS (ENSMUSG00000026648.18) -1655 ENSMUSG00000026650.15 ENSMUSG00000026650 ENSMUST00000144584 Meig1 protein_coding Interval_59017 chr15 41751213 41751985 + 0 NA promoter-TSS (ENSMUSG00000022307.16) protein_coding-promoter-TSS (ENSMUSG00000022307.16) 37312 ENSMUSG00000097232.1 ENSMUSG00000097232 ENSMUST00000180418 Gm26854 antisense Interval_85404 chr19 25528148 25528505 + 0 NA intron (ENSMUSG00000024837.15, intron 2 of 3) protein_coding-intron (ENSMUSG00000024837.15, intron 2 of 4) 22619 ENSMUSG00000024837.15 ENSMUSG00000024837 ENSMUST00000160814 Dmrt1 protein_coding Interval_143317 chr7 5127971 5129117 + 0 NA promoter-TSS (ENSMUSG00000092953.1) miRNA-promoter-TSS (ENSMUSG00000092953.1) 812 ENSMUSG00000109495.1 ENSMUSG00000109495 ENSMUST00000207732 Gm47692 processed_pseudogene Interval_118930 chr4 134512728 134513508 + 0 NA intron (ENSMUSG00000078521.2, intron 1 of 2) protein_coding-intron (ENSMUSG00000078521.2, intron 1 of 2) 2119 ENSMUSG00000078521.2 ENSMUSG00000078521 ENSMUST00000105866 Aunip protein_coding Interval_100224 chr2 167769698 167770282 + 0 NA Intergenic Intergenic -7477 ENSMUSG00000084797.1 ENSMUSG00000084797 ENSMUST00000127441 Gm14321 lincRNA Interval_46532 chr13 66893391 66893747 + 0 NA Intergenic Intergenic 9217 ENSMUSG00000021520.4 ENSMUSG00000021520 ENSMUST00000174606 Uqcrb protein_coding Interval_19838 chr10 110102497 110102814 + 0 NA exon (ENSMUSG00000112556.1, exon 1 of 1) TEC-exon (ENSMUSG00000112556.1, exon 1 of 1) 2836 ENSMUSG00000112556.1 ENSMUSG00000112556 ENSMUST00000218053 Gm47339 TEC Interval_145363 chr7 34242157 34242732 + 0 NA intron (ENSMUSG00000066571.13, intron 10 of 13) protein_coding-intron (ENSMUSG00000066571.13, intron 9 of 12) 8003 ENSMUSG00000085105.2 ENSMUSG00000085105 ENSMUST00000205940 Gm12758 antisense Interval_162422 chr8 128523755 128524080 + 0 NA Intergenic Intergenic -110019 ENSMUSG00000110562.1 ENSMUSG00000110562 ENSMUST00000212641 Gm9204 processed_pseudogene Interval_170275 chr9 106626496 106628360 + 0 NA exon (ENSMUSG00000091129.3, exon 2 of 2) protein_coding-exon (ENSMUSG00000091129.3, exon 2 of 2) 1447 ENSMUSG00000091129.3 ENSMUSG00000091129 ENSMUST00000171091 Iqcf6 protein_coding Interval_15182 chr10 43197729 43198224 + 0 NA Intergenic Intergenic 23277 ENSMUSG00000045008.2 ENSMUSG00000045008 ENSMUST00000053792 9030612E09Rik bidirectional_promoter_lncRNA Interval_158777 chr8 86364585 86365133 + 0 NA Intergenic Intergenic 72358 ENSMUSG00000065737.1 ENSMUSG00000065737 ENSMUST00000083803 Gm24490 snRNA Interval_40011 chr12 100479524 100481289 + 0 NA intron (ENSMUSG00000033530.8, intron 3 of 9) protein_coding-intron (ENSMUSG00000033530.8, intron 3 of 19) -14108 ENSMUSG00000033530.8 ENSMUSG00000033530 ENSMUST00000220614 Ttc7b protein_coding Interval_25334 chr11 46447740 46447956 + 0 NA Intergenic Intergenic 3499 ENSMUSG00000082530.1 ENSMUSG00000082530 ENSMUST00000119051 Gm12168 processed_pseudogene Interval_29572 chr11 85007658 85007875 + 0 NA intron (ENSMUSG00000000804.14, intron 27 of 33) protein_coding-intron (ENSMUSG00000000804.14, intron 8 of 14) 49941 ENSMUSG00000000805.18 ENSMUSG00000000805 ENSMUST00000108076 Car4 protein_coding Interval_16489 chr10 63160210 63161417 + 0 NA intron (ENSMUSG00000020067.8, intron 6 of 19) protein_coding-intron (ENSMUSG00000020067.8, intron 6 of 19) -38129 ENSMUSG00000020067.8 ENSMUSG00000020067 ENSMUST00000218978 Mypn protein_coding Interval_71389 chr17 23185399 23185993 + 0 NA intron (ENSMUSG00000002617.14, intron 1 of 3) protein_coding-intron (ENSMUSG00000002617.14, intron 3 of 5) 5683 ENSMUSG00000002617.14 ENSMUSG00000002617 ENSMUST00000151447 Zfp40 protein_coding Interval_148707 chr7 84394932 84395765 + 0 NA intron (ENSMUSG00000015709.9, intron 1 of 7) protein_coding-intron (ENSMUSG00000015709.9, intron 1 of 18) -27437 ENSMUSG00000015709.9 ENSMUSG00000015709 ENSMUST00000208863 Arnt2 protein_coding Interval_156662 chr8 56566484 56567770 + 0 NA intron (ENSMUSG00000038206.13, intron 2 of 2) protein_coding-intron (ENSMUSG00000038206.13, intron 2 of 5) 5826 ENSMUSG00000076392.1 ENSMUSG00000076392 ENSMUST00000102437 Gm25992 miRNA Interval_65425 chr16 22254668 22255056 + 0 NA TTS (ENSMUSG00000022858.16) protein_coding-TTS (ENSMUSG00000022858.16) 10694 ENSMUSG00000116761.1 ENSMUSG00000116761 ENSMUST00000232582 Gm36796 processed_pseudogene Interval_87564 chr19 53476728 53477391 + 0 NA Intergenic Intergenic -6435 ENSMUSG00000118378.1 ENSMUSG00000118378 ENSMUST00000235451 Gm50393 TEC Interval_18055 chr10 81570606 81572384 + 0 NA Intergenic Intergenic 4445 ENSMUSG00000090034.1 ENSMUSG00000090034 ENSMUST00000162771 Gm15917 antisense Interval_21052 chr10 125538040 125538737 + 0 NA Intergenic Intergenic 25857 ENSMUSG00000112100.1 ENSMUSG00000112100 ENSMUST00000219250 Gm9102 processed_pseudogene Interval_86091 chr19 36498465 36499765 + 0 NA Intergenic Intergenic -47958 ENSMUSG00000114235.1 ENSMUSG00000114235 ENSMUST00000224716 F530104D19Rik antisense Interval_13469 chr10 18468996 18470026 + 0 NA promoter-TSS (ENSMUSG00000039835.16) protein_coding-promoter-TSS (ENSMUSG00000039835.16) 76553 ENSMUSG00000019853.6 ENSMUSG00000019853 ENSMUST00000214548 Hebp2 protein_coding Interval_129531 chr5 120741965 120742764 + 0 NA intron (ENSMUSG00000032690.16, intron 4 of 11) protein_coding-intron (ENSMUSG00000032690.16, intron 4 of 10) -3672 ENSMUSG00000107075.1 ENSMUSG00000107075 ENSMUST00000201095 Gm43068 TEC Interval_170037 chr9 103920872 103921175 + 0 NA promoter-TSS (ENSMUSG00000099722.3) lincRNA-promoter-TSS (ENSMUSG00000099722.3) 33014 ENSMUSG00000100266.2 ENSMUSG00000100266 ENSMUST00000187540 Gm5372 processed_pseudogene Interval_19311 chr10 96573915 96574111 + 0 NA intron (ENSMUSG00000112354.1, intron 2 of 2) lincRNA-intron (ENSMUSG00000112354.1, intron 2 of 2) 21718 ENSMUSG00000112354.1 ENSMUSG00000112354 ENSMUST00000219313 Gm33843 lincRNA Interval_81792 chr18 64750087 64750776 + 0 NA Intergenic Intergenic 22365 ENSMUSG00000095778.1 ENSMUSG00000095778 ENSMUST00000158431 Gm23016 snRNA Interval_69998 chr17 4190878 4191070 + 0 NA Intergenic Intergenic -68872 ENSMUSG00000116615.1 ENSMUSG00000116615 ENSMUST00000231319 4930548J01Rik processed_transcript Interval_65036 chr16 18620536 18622079 + 0 NA TTS (ENSMUSG00000072214.7) protein_coding-TTS (ENSMUSG00000072214.7) 333 ENSMUSG00000050761.4 ENSMUSG00000050761 ENSMUST00000051160 Gp1bb protein_coding Interval_6333 chr1 105999038 105999428 + 0 NA intron (ENSMUSG00000038866.15, intron 1 of 12) protein_coding-intron (ENSMUSG00000038866.15, intron 1 of 13) -4904 ENSMUSG00000038866.15 ENSMUSG00000038866 ENSMUST00000131830 Zcchc2 protein_coding Interval_42484 chr13 14026952 14027183 + 0 NA intron (ENSMUSG00000039233.12, intron 2 of 14) protein_coding-intron (ENSMUSG00000039233.12, intron 3 of 16) -14325 ENSMUSG00000113819.1 ENSMUSG00000113819 ENSMUST00000220914 Gm48017 processed_pseudogene Interval_80394 chr18 41550014 41551684 + 0 NA Intergenic Intergenic 35242 ENSMUSG00000117677.1 ENSMUSG00000117677 ENSMUST00000235955 Gm50409 processed_pseudogene Interval_104260 chr3 62338560 62340071 + 0 NA exon (ENSMUSG00000036885.14, exon 1 of 14) protein_coding-exon (ENSMUSG00000036885.14, exon 1 of 14) 1217 ENSMUSG00000103502.1 ENSMUSG00000103502 ENSMUST00000192267 9330121J05Rik antisense Interval_88320 chr2 3730395 3731724 + 0 NA intron (ENSMUSG00000026655.15, intron 1 of 3) protein_coding-intron (ENSMUSG00000026655.15, intron 1 of 3) 24118 ENSMUSG00000085205.1 ENSMUSG00000085205 ENSMUST00000131044 Gm13185 antisense Interval_173612 chrX 100864938 100865959 + 0 NA intron (ENSMUSG00000009670.11, intron 25 of 29) protein_coding-intron (ENSMUSG00000009670.11, intron 25 of 29) 88163 ENSMUSG00000000881.12 ENSMUSG00000000881 ENSMUST00000146772 Dlg3 protein_coding Interval_118951 chr4 134666044 134666990 + 0 NA intron (ENSMUSG00000037306.13, intron 1 of 8) protein_coding-intron (ENSMUSG00000037306.13, intron 2 of 12) 37250 ENSMUSG00000037306.13 ENSMUSG00000037306 ENSMUST00000176606 Man1c1 protein_coding Interval_40566 chr12 105784001 105785326 + 0 NA promoter-TSS (ENSMUSG00000021111.15) protein_coding-promoter-TSS (ENSMUSG00000021111.15) -44404 ENSMUSG00000021111.15 ENSMUSG00000021111 ENSMUST00000172089 Papola protein_coding Interval_153253 chr7 142937083 142938792 + 0 NA Intergenic Intergenic -6817 ENSMUSG00000000214.11 ENSMUSG00000000214 ENSMUST00000140344 Th protein_coding Interval_62168 chr15 88485582 88485840 + 0 NA Intergenic Intergenic -114591 ENSMUSG00000054117.8 ENSMUSG00000054117 ENSMUST00000066949 Zdhhc25 protein_coding Interval_9926 chr1 164148970 164149271 + 0 NA TTS (ENSMUSG00000026580.16) protein_coding-TTS (ENSMUSG00000026580.16) -2718 ENSMUSG00000026579.8 ENSMUSG00000026579 ENSMUST00000086040 F5 protein_coding Interval_49890 chr13 117864331 117864953 + 0 NA intron (ENSMUSG00000021730.8, intron 3 of 7) protein_coding-intron (ENSMUSG00000021730.8, intron 3 of 7) -144631 ENSMUSG00000079048.8 ENSMUSG00000079048 ENSMUST00000110292 4933413L06Rik antisense Interval_24692 chr11 35941403 35941848 + 0 NA intron (ENSMUSG00000018849.6, intron 1 of 22) protein_coding-intron (ENSMUSG00000018849.6, intron 1 of 22) -54429 ENSMUSG00000081571.1 ENSMUSG00000081571 ENSMUST00000117261 Gm12125 processed_pseudogene Interval_47279 chr13 80564019 80565401 + 0 NA Intergenic Intergenic 71701 ENSMUSG00000114528.1 ENSMUSG00000114528 ENSMUST00000223876 Gm46388 processed_pseudogene Interval_38970 chr12 84190026 84190677 + 0 NA intron (ENSMUSG00000042507.15, intron 1 of 12) protein_coding-intron (ENSMUSG00000042507.15, intron 1 of 12) -2545 ENSMUSG00000113776.1 ENSMUSG00000113776 ENSMUST00000220651 Gm19327 TEC Interval_35602 chr12 25217374 25217624 + 0 NA Intergenic Intergenic 35731 ENSMUSG00000114033.1 ENSMUSG00000114033 ENSMUST00000222804 Gm47705 lincRNA Interval_23244 chr11 20859011 20860470 + 0 NA Intergenic Intergenic -11859 ENSMUSG00000064671.1 ENSMUSG00000064671 ENSMUST00000082737 Gm22807 snoRNA Interval_14239 chr10 29394986 29395401 + 0 NA TTS (ENSMUSG00000088257.1) snoRNA-TTS (ENSMUSG00000088257.1) 157 ENSMUSG00000088257.1 ENSMUSG00000088257 ENSMUST00000157632 Gm24286 snoRNA Interval_133265 chr5 150948937 150949598 + 0 NA Intergenic Intergenic -3437 ENSMUSG00000058488.7 ENSMUSG00000058488 ENSMUST00000202096 Kl protein_coding Interval_87043 chr19 45763757 45764153 + 0 NA promoter-TSS (ENSMUSG00000025220.8) protein_coding-promoter-TSS (ENSMUSG00000025220.8) 7931 ENSMUSG00000025220.8 ENSMUSG00000025220 ENSMUST00000235448 Oga protein_coding Interval_57078 chr15 5808098 5808675 + 0 NA Intergenic Intergenic -55920 ENSMUSG00000098565.1 ENSMUSG00000098565 ENSMUST00000185048 Gm27760 miRNA Interval_164498 chr9 37488228 37490352 + 0 NA promoter-TSS (ENSMUSG00000042138.9) protein_coding-promoter-TSS (ENSMUSG00000042138.9) -31 ENSMUSG00000042138.9 ENSMUSG00000042138 ENSMUST00000213411 Msantd2 protein_coding Interval_157058 chr8 64867542 64868583 + 0 NA Intergenic Intergenic -18138 ENSMUSG00000031605.8 ENSMUSG00000031605 ENSMUST00000209544 Klhl2 protein_coding Interval_46231 chr13 62808127 62808459 + 0 NA Intergenic Intergenic -4783 ENSMUSG00000113637.1 ENSMUSG00000113637 ENSMUST00000223520 Gm7049 processed_pseudogene Interval_96603 chr2 126350958 126351265 + 0 NA intron (ENSMUSG00000060131.11, intron 23 of 27) protein_coding-intron (ENSMUSG00000060131.11, intron 23 of 27) -81748 ENSMUSG00000089480.1 ENSMUSG00000089480 ENSMUST00000158855 Gm24739 misc_RNA Interval_69838 chr16 97322354 97323194 + 0 NA Intergenic Intergenic -82495 ENSMUSG00000116686.1 ENSMUSG00000116686 ENSMUST00000232315 Gm49681 processed_pseudogene Interval_157503 chr8 70931367 70932891 + 0 NA exon (ENSMUSG00000074252.2, exon 1 of 1) TEC-exon (ENSMUSG00000074252.2, exon 1 of 1) 724 ENSMUSG00000074252.2 ENSMUSG00000074252 ENSMUST00000098653 Gm10654 TEC Interval_60098 chr15 65510492 65511269 + 0 NA Intergenic Intergenic 177268 ENSMUSG00000115402.1 ENSMUSG00000115402 ENSMUST00000227091 Gm49243 processed_pseudogene Interval_171632 chr9 119693923 119694366 + 0 NA TTS (ENSMUSG00000034533.10) protein_coding-TTS (ENSMUSG00000034533.10) -6105 ENSMUSG00000034533.10 ENSMUSG00000034533 ENSMUST00000213401 Scn10a protein_coding Interval_66265 chr16 32729299 32729635 + 0 NA Intergenic Intergenic 2801 ENSMUSG00000098225.1 ENSMUSG00000098225 ENSMUST00000182938 Gm9556 processed_pseudogene Interval_15885 chr10 58801154 58801364 + 0 NA Intergenic Intergenic 11883 ENSMUSG00000055958.3 ENSMUSG00000055958 ENSMUST00000069768 Gm9987 pseudogene Interval_73913 chr17 45455206 45459642 + 0 NA intron (ENSMUSG00000023935.10, intron 3 of 6) protein_coding-intron (ENSMUSG00000023935.10, intron 3 of 7) -8364 ENSMUSG00000061242.6 ENSMUSG00000061242 ENSMUST00000095268 Gm9104 processed_pseudogene Interval_118112 chr4 129020669 129020980 + 0 NA Intergenic Intergenic 27471 ENSMUSG00000028792.14 ENSMUSG00000028792 ENSMUST00000152762 Ak2 protein_coding Interval_122091 chr5 16838675 16839954 + 0 NA intron (ENSMUSG00000109903.1, intron 16 of 20) protein_coding-intron (ENSMUSG00000109903.1, intron 16 of 20) 3400 ENSMUSG00000099854.1 ENSMUSG00000099854 ENSMUST00000186866 Gm28710 lincRNA Interval_112494 chr4 41606435 41607270 + 0 NA intron (ENSMUSG00000061322.15, intron 9 of 19) protein_coding-intron (ENSMUSG00000061322.15, intron 9 of 19) -24792 ENSMUSG00000061322.15 ENSMUSG00000061322 ENSMUST00000119127 Dnaic1 protein_coding Interval_75313 chr17 65830229 65830722 + 0 NA intron (ENSMUSG00000061950.17, intron 3 of 4) protein_coding-intron (ENSMUSG00000061950.17, intron 12 of 19) 1527 ENSMUSG00000061950.17 ENSMUSG00000061950 ENSMUST00000162703 Ppp4r1 protein_coding Interval_117907 chr4 126989967 126990347 + 0 NA Intergenic Intergenic 6718 ENSMUSG00000081609.1 ENSMUSG00000081609 ENSMUST00000117303 Gm12939 processed_pseudogene Interval_170834 chr9 111055538 111057052 + 0 NA exon (ENSMUSG00000043953.12, exon 2 of 2) protein_coding-exon (ENSMUSG00000043953.12, exon 2 of 2) 1224 ENSMUSG00000043953.12 ENSMUSG00000043953 ENSMUST00000195968 Ccrl2 protein_coding Interval_105936 chr3 90174406 90175394 + 0 NA intron (ENSMUSG00000027939.11, intron 22 of 39) protein_coding-intron (ENSMUSG00000027939.11, intron 22 of 39) -23782 ENSMUSG00000084527.1 ENSMUSG00000084527 ENSMUST00000122578 Gm24185 snRNA Interval_43866 chr13 37710580 37711079 + 0 NA intron (ENSMUSG00000114732.1, intron 2 of 4) lincRNA-intron (ENSMUSG00000114732.1, intron 1 of 2) 6819 ENSMUSG00000114732.1 ENSMUSG00000114732 ENSMUST00000224732 Gm40918 lincRNA Interval_171515 chr9 118984844 118985436 + 0 NA intron (ENSMUSG00000047409.13, intron 1 of 5) protein_coding-intron (ENSMUSG00000047409.13, intron 1 of 7) -46656 ENSMUSG00000065513.1 ENSMUSG00000065513 ENSMUST00000083579 Mir26a-1 miRNA Interval_107890 chr3 116619879 116620800 + 0 NA TTS (ENSMUSG00000027959.14) protein_coding-TTS (ENSMUSG00000027959.14) -5584 ENSMUSG00000027959.14 ENSMUSG00000027959 ENSMUST00000198747 Sass6 protein_coding Interval_98124 chr2 148452517 148453401 + 0 NA Intergenic Intergenic -9396 ENSMUSG00000027435.8 ENSMUSG00000027435 ENSMUST00000099269 Cd93 protein_coding Interval_126621 chr5 91006686 91007308 + 0 NA intron (ENSMUSG00000029376.8, intron 7 of 7) protein_coding-intron (ENSMUSG00000029376.8, intron 7 of 7) -20467 ENSMUSG00000035020.11 ENSMUSG00000035020 ENSMUST00000041516 Epgn protein_coding Interval_152940 chr7 139940637 139940928 + 0 NA exon (ENSMUSG00000066129.15, exon 31 of 31) protein_coding-exon (ENSMUSG00000066129.15, exon 31 of 31) -3007 ENSMUSG00000047751.9 ENSMUSG00000047751 ENSMUST00000168457 Utf1 protein_coding Interval_77400 chr17 88467465 88469739 + 0 NA intron (ENSMUSG00000034998.18, intron 2 of 2) protein_coding-intron (ENSMUSG00000034998.18, intron 2 of 5) 27867 ENSMUSG00000034998.18 ENSMUSG00000034998 ENSMUST00000141052 Foxn2 protein_coding Interval_174366 chrX 150440645 150441453 + 0 NA promoter-TSS (ENSMUSG00000041353.12) protein_coding-promoter-TSS (ENSMUSG00000041353.12) 9546 ENSMUSG00000082974.1 ENSMUSG00000082974 ENSMUST00000119673 Gm15129 processed_pseudogene Interval_95187 chr2 104616532 104617645 + 0 NA intron (ENSMUSG00000027176.8, intron 3 of 20) protein_coding-intron (ENSMUSG00000027176.8, intron 3 of 20) 26470 ENSMUSG00000027176.8 ENSMUSG00000027176 ENSMUST00000126539 Cstf3 protein_coding Interval_166299 chr9 58156923 58158167 + 0 NA TTS (ENSMUSG00000037206.15) protein_coding-TTS (ENSMUSG00000037206.15) 23470 ENSMUSG00000032327.14 ENSMUSG00000032327 ENSMUST00000134450 Stra6 protein_coding Interval_145972 chr7 42761222 42761558 + 0 NA Intergenic Intergenic 10976 ENSMUSG00000092238.1 ENSMUSG00000092238 ENSMUST00000173237 Gm6004 processed_pseudogene Interval_46872 chr13 72897142 72898341 + 0 NA Intergenic Intergenic -80978 ENSMUSG00000113082.1 ENSMUSG00000113082 ENSMUST00000223149 D730050B12Rik lincRNA Interval_35110 chr12 17366921 17367420 + 0 NA intron (ENSMUSG00000061458.9, intron 9 of 20) protein_coding-intron (ENSMUSG00000061458.9, intron 9 of 20) 11778 ENSMUSG00000093037.1 ENSMUSG00000093037 ENSMUST00000175296 Mir3066 miRNA Interval_150943 chr7 116530518 116531990 + 0 NA intron (ENSMUSG00000030659.14, intron 3 of 4) protein_coding-intron (ENSMUSG00000030659.14, intron 10 of 13) 2442 ENSMUSG00000030659.14 ENSMUSG00000030659 ENSMUST00000183335 Nucb2 protein_coding Interval_50902 chr14 20673121 20674917 + 0 NA promoter-TSS (ENSMUSG00000039367.11) protein_coding-promoter-TSS (ENSMUSG00000039367.11) -8801 ENSMUSG00000039367.11 ENSMUSG00000039367 ENSMUST00000225903 Sec24c protein_coding Interval_27031 chr11 62472416 62472754 + 0 NA intron (ENSMUSG00000014245.8, intron 1 of 6) protein_coding-intron (ENSMUSG00000014245.8, intron 1 of 6) -10212 ENSMUSG00000086310.1 ENSMUSG00000086310 ENSMUST00000153718 Gm12278 antisense Interval_19193 chr10 95410605 95411085 + 0 NA TTS (ENSMUSG00000020027.18) protein_coding-TTS (ENSMUSG00000020027.18) 4639 ENSMUSG00000020027.18 ENSMUSG00000020027 ENSMUST00000145847 Socs2 protein_coding Interval_12462 chr1 193672605 193673776 + 0 NA Intergenic Intergenic -163016 ENSMUSG00000097850.2 ENSMUSG00000097850 ENSMUST00000180420 Mir205hg lincRNA Interval_30880 chr11 97035515 97035774 + 0 NA intron (ENSMUSG00000020878.6, intron 6 of 7) protein_coding-intron (ENSMUSG00000020878.6, intron 6 of 7) -1363 ENSMUSG00000081860.1 ENSMUSG00000081860 ENSMUST00000120287 Gm11533 processed_pseudogene Interval_101025 chr2 174311876 174312683 + 0 NA intron (ENSMUSG00000027523.20, intron 2 of 12) protein_coding-intron (ENSMUSG00000027523.20, intron 1 of 11) -16843 ENSMUSG00000086537.7 ENSMUSG00000086537 ENSMUST00000143738 Gnasas1 antisense Interval_140727 chr6 120897202 120898659 + 0 NA promoter-TSS (ENSMUSG00000004446.12) protein_coding-promoter-TSS (ENSMUSG00000004446.12) -362 ENSMUSG00000004446.12 ENSMUSG00000004446 ENSMUST00000125915 Bid protein_coding Interval_33507 chr11 116940229 116941306 + 0 NA intron (ENSMUSG00000043857.16, intron 3 of 17) protein_coding-intron (ENSMUSG00000043857.16, intron 3 of 17) -6568 ENSMUSG00000043857.16 ENSMUSG00000043857 ENSMUST00000126757 Mgat5b protein_coding Interval_154941 chr8 25198459 25199109 + 0 NA TTS (ENSMUSG00000065954.11) protein_coding-TTS (ENSMUSG00000065954.11) 2665 ENSMUSG00000065954.11 ENSMUSG00000065954 ENSMUST00000211218 Tacc1 protein_coding Interval_6233 chr1 103419081 103420280 + 0 NA intron (ENSMUSG00000099469.1, intron 3 of 4) unprocessed_pseudogene-intron (ENSMUSG00000099469.1, intron 3 of 4) 55694 ENSMUSG00000099469.1 ENSMUSG00000099469 ENSMUST00000190357 Gm29141 unprocessed_pseudogene Interval_156505 chr8 48804459 48804933 + 0 NA intron (ENSMUSG00000031561.16, intron 1 of 2) protein_coding-intron (ENSMUSG00000031561.16, intron 1 of 2) -39026 ENSMUSG00000100706.6 ENSMUSG00000100706 ENSMUST00000188936 Gm19744 processed_transcript Interval_34450 chr12 4240221 4240422 + 0 NA promoter-TSS (ENSMUSG00000111916.1) antisense-promoter-TSS (ENSMUSG00000111916.1) -812 ENSMUSG00000111916.1 ENSMUSG00000111916 ENSMUST00000220337 4921501I09Rik antisense Interval_4405 chr1 73947050 73948090 + 0 NA intron (ENSMUSG00000055322.16, intron 19 of 32) protein_coding-intron (ENSMUSG00000055322.16, intron 19 of 34) -91995 ENSMUSG00000098504.1 ENSMUSG00000098504 ENSMUST00000183826 Mir6351 miRNA Interval_127308 chr5 102424320 102425167 + 0 NA Intergenic Intergenic 8540 ENSMUSG00000106295.1 ENSMUSG00000106295 ENSMUST00000197280 Gm42932 processed_pseudogene Interval_79389 chr18 31568031 31569458 + 0 NA intron (ENSMUSG00000024259.9, intron 7 of 9) protein_coding-intron (ENSMUSG00000024259.9, intron 7 of 9) -40768 ENSMUSG00000092124.1 ENSMUSG00000092124 ENSMUST00000164667 B930094E09Rik protein_coding Interval_80066 chr18 37178049 37179081 + 0 NA promoter-TSS (ENSMUSG00000097430.2) processed_transcript-promoter-TSS (ENSMUSG00000097430.2) -51 ENSMUSG00000097430.2 ENSMUSG00000097430 ENSMUST00000192479 Gm10544 processed_transcript Interval_95883 chr2 117954031 117954730 + 0 NA intron (ENSMUSG00000087203.7, intron 8 of 9) processed_transcript-intron (ENSMUSG00000087203.7, intron 8 of 9) -85463 ENSMUSG00000103266.1 ENSMUSG00000103266 ENSMUST00000193616 Gm36979 TEC Interval_11580 chr1 182954696 182955460 + 0 NA intron (ENSMUSG00000079164.8, intron 1 of 2) protein_coding-intron (ENSMUSG00000079164.8, intron 1 of 3) 250 ENSMUSG00000079164.8 ENSMUSG00000079164 ENSMUST00000191820 Tlr5 protein_coding Interval_30650 chr11 95685939 95686303 + 0 NA Intergenic Intergenic 13022 ENSMUSG00000045075.3 ENSMUSG00000045075 ENSMUST00000191115 Gm9796 lincRNA Interval_323 chr1 3977145 3977564 + 0 NA intron (ENSMUSG00000102343.1, intron 2 of 2) lincRNA-intron (ENSMUSG00000102343.1, intron 2 of 2) 8861 ENSMUSG00000102343.1 ENSMUSG00000102343 ENSMUST00000192427 Gm37381 lincRNA Interval_31962 chr11 104195438 104196326 + 0 NA Intergenic Intergenic 9555 ENSMUSG00000049506.7 ENSMUSG00000049506 ENSMUST00000059448 Sppl2c protein_coding Interval_39738 chr12 96084267 96084501 + 0 NA Intergenic Intergenic -37264 ENSMUSG00000059695.4 ENSMUSG00000059695 ENSMUST00000073560 1700019M22Rik processed_pseudogene Interval_53028 chr14 53643373 53644217 + 0 NA Intergenic Intergenic 2849 ENSMUSG00000095711.5 ENSMUSG00000095711 ENSMUST00000184874 Trav14-2 TR_V_gene Interval_67897 chr16 58862145 58862541 + 0 NA Intergenic Intergenic 12425 ENSMUSG00000063137.5 ENSMUSG00000063137 ENSMUST00000072853 Olfr177 protein_coding Interval_26981 chr11 62049956 62051241 + 0 NA intron (ENSMUSG00000042331.13, intron 3 of 14) protein_coding-intron (ENSMUSG00000042331.13, intron 3 of 7) 31734 ENSMUSG00000042331.13 ENSMUSG00000042331 ENSMUST00000202179 Specc1 protein_coding Interval_146386 chr7 45630298 45630606 + 0 NA TTS (ENSMUSG00000109998.1) antisense-TTS (ENSMUSG00000109998.1) 2357 ENSMUSG00000109998.1 ENSMUSG00000109998 ENSMUST00000209998 Gm45437 antisense Interval_36701 chr12 52247386 52247688 + 0 NA intron (ENSMUSG00000035142.18, intron 5 of 5) protein_coding-intron (ENSMUSG00000035142.18, intron 6 of 10) 71450 ENSMUSG00000035142.18 ENSMUSG00000035142 ENSMUST00000162111 Nubpl protein_coding Interval_158335 chr8 81806723 81807356 + 0 NA intron (ENSMUSG00000037940.17, intron 1 of 17) protein_coding-intron (ENSMUSG00000037940.17, intron 5 of 22) -16131 ENSMUSG00000090584.1 ENSMUSG00000090584 ENSMUST00000171382 Gm17169 processed_pseudogene Interval_78700 chr18 17979130 17979333 + 0 NA Intergenic Intergenic -120329 ENSMUSG00000093274.1 ENSMUSG00000093274 ENSMUST00000175533 Gm26235 miRNA Interval_106869 chr3 101424507 101424772 + 0 NA TTS (ENSMUSG00000106137.1) antisense-TTS (ENSMUSG00000106137.1) 1014 ENSMUSG00000106137.1 ENSMUSG00000106137 ENSMUST00000196233 Gm42538 antisense Interval_69612 chr16 94607800 94608537 + 0 NA intron (ENSMUSG00000022897.15, intron 1 of 5) protein_coding-intron (ENSMUSG00000022897.15, intron 1 of 11) -12209 ENSMUSG00000081692.1 ENSMUSG00000081692 ENSMUST00000119372 Gm15971 processed_pseudogene Interval_170542 chr9 108604352 108605428 + 0 NA TTS (ENSMUSG00000064145.12) protein_coding-TTS (ENSMUSG00000064145.12) -7314 ENSMUSG00000006675.10 ENSMUSG00000006675 ENSMUST00000193621 P4htm protein_coding Interval_66887 chr16 38355319 38355879 + 0 NA intron (ENSMUSG00000095464.1, intron 2 of 2) protein_coding-intron (ENSMUSG00000095464.1, intron 2 of 2) 6307 ENSMUSG00000046516.10 ENSMUSG00000046516 ENSMUST00000156026 Cox17 protein_coding Interval_135519 chr6 39879340 39879907 + 0 NA intron (ENSMUSG00000057716.7, intron 1 of 3) protein_coding-intron (ENSMUSG00000057716.7, intron 1 of 3) -7652 ENSMUSG00000097406.1 ENSMUSG00000097406 ENSMUST00000180899 Gm26833 antisense Interval_35073 chr12 17062646 17063490 + 0 NA Intergenic Intergenic -2345 ENSMUSG00000113447.1 ENSMUSG00000113447 ENSMUST00000221508 Gm48538 lincRNA Interval_100295 chr2 168233033 168234021 + 0 NA TTS (ENSMUSG00000074576.4) protein_coding-TTS (ENSMUSG00000074576.4) 2905 ENSMUSG00000074576.4 ENSMUSG00000074576 ENSMUST00000099071 Mocs3 protein_coding Interval_125888 chr5 75449833 75451538 + 0 NA Intergenic Intergenic -51313 ENSMUSG00000107386.1 ENSMUSG00000107386 ENSMUST00000202494 Gm42800 lincRNA Interval_4195 chr1 71556745 71557904 + 0 NA exon (ENSMUSG00000026192.13, exon 1 of 1) protein_coding-exon (ENSMUSG00000026192.13, exon 1 of 1) 145 ENSMUSG00000026192.13 ENSMUSG00000026192 ENSMUST00000154855 Atic protein_coding Interval_115592 chr4 101183270 101183657 + 0 NA intron (ENSMUSG00000028530.14, intron 4 of 4) protein_coding-intron (ENSMUSG00000028530.14, intron 5 of 24) -3301 ENSMUSG00000077677.1 ENSMUSG00000077677 ENSMUST00000104489 Gm24468 snRNA Interval_165673 chr9 50849181 50849824 + 0 NA intron (ENSMUSG00000032058.14, intron 1 of 3) protein_coding-intron (ENSMUSG00000032058.14, intron 1 of 3) -23510 ENSMUSG00000032058.14 ENSMUSG00000032058 ENSMUST00000176414 Ppp2r1b protein_coding Interval_89696 chr2 24719705 24720279 + 0 NA exon (ENSMUSG00000004113.18, exon 8 of 47) protein_coding-exon (ENSMUSG00000004113.18, exon 8 of 47) 45291 ENSMUSG00000083973.1 ENSMUSG00000083973 ENSMUST00000121558 Gm13459 processed_pseudogene Interval_23573 chr11 23475581 23476145 + 0 NA intron (ENSMUSG00000056342.16, intron 75 of 79) protein_coding-intron (ENSMUSG00000056342.16, intron 3 of 6) 3804 ENSMUSG00000065591.1 ENSMUSG00000065591 ENSMUST00000083657 Gm22753 snRNA Interval_85164 chr19 23258320 23259352 + 0 NA intron (ENSMUSG00000024943.9, intron 6 of 23) protein_coding-intron (ENSMUSG00000024943.9, intron 6 of 24) 13763 ENSMUSG00000024943.9 ENSMUSG00000024943 ENSMUST00000224723 Smc5 protein_coding Interval_100011 chr2 166483171 166484144 + 0 NA Intergenic Intergenic 25517 ENSMUSG00000085682.2 ENSMUSG00000085682 ENSMUST00000123480 Gm14267 transcribed_processed_pseudogene Interval_99079 chr2 157039898 157041523 + 0 NA promoter-TSS (ENSMUSG00000055485.6) protein_coding-promoter-TSS (ENSMUSG00000055485.6) -13238 ENSMUSG00000055485.6 ENSMUSG00000055485 ENSMUST00000133571 Soga1 protein_coding Interval_75499 chr17 67507126 67507461 + 0 NA Intergenic Intergenic -44314 ENSMUSG00000087829.1 ENSMUSG00000087829 ENSMUST00000157204 Gm22277 misc_RNA Interval_129679 chr5 121696609 121696811 + 0 NA Intergenic Intergenic 13782 ENSMUSG00000029458.14 ENSMUSG00000029458 ENSMUST00000196897 Brap protein_coding Interval_143707 chr7 15853956 15855281 + 0 NA Intergenic Intergenic -14940 ENSMUSG00000041583.8 ENSMUSG00000041583 ENSMUST00000108513 Obox6 protein_coding Interval_19829 chr10 109832284 109833256 + 0 NA exon (ENSMUSG00000020181.18, exon 1 of 29) protein_coding-exon (ENSMUSG00000020181.18, exon 1 of 29) 183991 ENSMUSG00000112260.1 ENSMUSG00000112260 ENSMUST00000219153 3110043J17Rik TEC Interval_91865 chr2 50600200 50601121 + 0 NA Intergenic Intergenic 52746 ENSMUSG00000085429.1 ENSMUSG00000085429 ENSMUST00000146690 Gm13485 lincRNA Interval_75261 chr17 65536155 65536697 + 0 NA intron (ENSMUSG00000045036.15, intron 1 of 14) protein_coding-intron (ENSMUSG00000045036.15, intron 2 of 15) -22458 ENSMUSG00000117140.1 ENSMUSG00000117140 ENSMUST00000233254 Gm18138 processed_pseudogene Interval_14668 chr10 38534126 38534317 + 0 NA Intergenic Intergenic 81260 ENSMUSG00000094521.1 ENSMUSG00000094521 ENSMUST00000177920 Gm22911 snRNA Interval_9143 chr1 154026724 154027402 + 0 NA TTS (ENSMUSG00000100502.1) lincRNA-TTS (ENSMUSG00000100502.1) 7238 ENSMUSG00000100502.1 ENSMUSG00000100502 ENSMUST00000188704 Gm28286 lincRNA Interval_83406 chr18 84940641 84941319 + 0 NA intron (ENSMUSG00000034391.12, intron 1 of 9) protein_coding-intron (ENSMUSG00000034391.12, intron 1 of 9) 5952 ENSMUSG00000034391.12 ENSMUSG00000034391 ENSMUST00000225015 Fbxo15 protein_coding Interval_45418 chr13 55022151 55023098 + 0 NA Intergenic Intergenic -1390 ENSMUSG00000025877.14 ENSMUSG00000025877 ENSMUST00000135983 Hk3 protein_coding Interval_60662 chr15 76002208 76004589 + 0 NA exon (ENSMUSG00000046761.13, exon 5 of 5) protein_coding-exon (ENSMUSG00000046761.13, exon 5 of 5) 5027 ENSMUSG00000063704.13 ENSMUSG00000063704 ENSMUST00000230929 Mapk15 protein_coding Interval_88730 chr2 10053884 10055342 + 0 NA Intergenic Intergenic 6775 ENSMUSG00000103570.1 ENSMUSG00000103570 ENSMUST00000194765 C630004M23Rik TEC Interval_125817 chr5 74589120 74589699 + 0 NA TTS (ENSMUSG00000029227.15) protein_coding-TTS (ENSMUSG00000029227.15) 4627 ENSMUSG00000029227.15 ENSMUSG00000029227 ENSMUST00000125129 Fip1l1 protein_coding Interval_89348 chr2 19602458 19603037 + 0 NA Intergenic Intergenic 34239 ENSMUSG00000086621.1 ENSMUSG00000086621 ENSMUST00000147324 Gm13348 antisense Interval_87192 chr19 46760850 46762435 + 0 NA promoter-TSS (ENSMUSG00000064105.13) protein_coding-promoter-TSS (ENSMUSG00000064105.13) 53674 ENSMUSG00000003559.8 ENSMUSG00000003559 ENSMUST00000235266 As3mt protein_coding Interval_140106 chr6 114264262 114265313 + 0 NA Intergenic Intergenic -18003 ENSMUSG00000030310.10 ENSMUSG00000030310 ENSMUST00000204540 Slc6a1 protein_coding Interval_125294 chr5 65998083 65998274 + 0 NA intron (ENSMUSG00000054598.13, intron 3 of 3) protein_coding-intron (ENSMUSG00000054598.13, intron 1 of 3) 3155 ENSMUSG00000054598.13 ENSMUSG00000054598 ENSMUST00000201302 9130230L23Rik protein_coding Interval_78604 chr18 15107300 15108801 + 0 NA intron (ENSMUSG00000036225.15, intron 1 of 4) protein_coding-intron (ENSMUSG00000036225.15, intron 1 of 4) -43952 ENSMUSG00000036225.15 ENSMUSG00000036225 ENSMUST00000234685 Kctd1 protein_coding Interval_103673 chr3 51524767 51526076 + 0 NA intron (ENSMUSG00000037111.9, intron 7 of 7) protein_coding-intron (ENSMUSG00000037111.9, intron 7 of 7) 11226 ENSMUSG00000037111.9 ENSMUSG00000037111 ENSMUST00000194828 Setd7 protein_coding Interval_2812 chr1 45766111 45766883 + 0 NA Intergenic Intergenic -1840 ENSMUSG00000100843.1 ENSMUSG00000100843 ENSMUST00000187682 Gm8307 processed_pseudogene Interval_26861 chr11 61155752 61156169 + 0 NA intron (ENSMUSG00000042506.15, intron 3 of 3) protein_coding-intron (ENSMUSG00000042506.15, intron 10 of 12) 12315 ENSMUSG00000042506.15 ENSMUSG00000042506 ENSMUST00000174220 Usp22 protein_coding Interval_3188 chr1 54584753 54586150 + 0 NA Intergenic Intergenic 18748 ENSMUSG00000101130.1 ENSMUSG00000101130 ENSMUST00000185933 Gm19637 processed_pseudogene Interval_39430 chr12 87351279 87351560 + 0 NA intron (ENSMUSG00000021036.10, intron 4 of 11) protein_coding-intron (ENSMUSG00000021036.10, intron 4 of 11) -20573 ENSMUSG00000113648.1 ENSMUSG00000113648 ENSMUST00000221879 Gm48806 processed_pseudogene Interval_156202 chr8 45975054 45975918 + 0 NA promoter-TSS (ENSMUSG00000031634.13) protein_coding-promoter-TSS (ENSMUSG00000031634.13) -46 ENSMUSG00000071103.10 ENSMUSG00000071103 ENSMUST00000239252 1700029J07Rik protein_coding Interval_34183 chr11 121147809 121148472 + 0 NA exon (ENSMUSG00000039329.8, exon 3 of 3) protein_coding-exon (ENSMUSG00000039329.8, exon 3 of 3) 1983 ENSMUSG00000039329.8 ENSMUSG00000039329 ENSMUST00000155694 Tex19.1 protein_coding Interval_57982 chr15 25847776 25847982 + 0 NA intron (ENSMUSG00000022270.16, intron 1 of 8) protein_coding-intron (ENSMUSG00000022270.16, intron 1 of 8) -7268 ENSMUSG00000115593.1 ENSMUSG00000115593 ENSMUST00000228649 Gm4824 processed_pseudogene Interval_144747 chr7 27978723 27979773 + 0 NA promoter-TSS (ENSMUSG00000063047.9) protein_coding-promoter-TSS (ENSMUSG00000063047.9) -3880 ENSMUSG00000063047.9 ENSMUSG00000063047 ENSMUST00000207098 Zfp780b protein_coding Interval_50630 chr14 16849558 16849770 + 0 NA Intergenic Intergenic -96995 ENSMUSG00000114890.1 ENSMUSG00000114890 ENSMUST00000223705 Tpi-rs9 processed_pseudogene Interval_148036 chr7 78597160 78597819 + 0 NA intron (ENSMUSG00000059146.12, intron 6 of 7) protein_coding-intron (ENSMUSG00000059146.12, intron 6 of 7) 18659 ENSMUSG00000052629.5 ENSMUSG00000052629 ENSMUST00000186234 Gm9885 antisense Interval_33668 chr11 117831608 117832796 + 0 NA promoter-TSS (ENSMUSG00000017718.15) protein_coding-promoter-TSS (ENSMUSG00000017718.15) 6221 ENSMUSG00000017718.15 ENSMUSG00000017718 ENSMUST00000131268 Afmid protein_coding Interval_130325 chr5 125764649 125764843 + 0 NA intron (ENSMUSG00000070498.3, intron 5 of 8) protein_coding-intron (ENSMUSG00000070498.3, intron 5 of 8) 83994 ENSMUSG00000091970.3 ENSMUSG00000091970 ENSMUST00000164138 Gm4868 processed_pseudogene Interval_117890 chr4 126889666 126890635 + 0 NA exon (ENSMUSG00000042446.16, exon 22 of 30) protein_coding-exon (ENSMUSG00000042446.16, exon 22 of 30) -29038 ENSMUSG00000088984.1 ENSMUSG00000088984 ENSMUST00000158359 Gm25604 snoRNA Interval_75054 chr17 62592033 62592222 + 0 NA Intergenic Intergenic -135007 ENSMUSG00000064570.1 ENSMUSG00000064570 ENSMUST00000082636 Gm25800 snoRNA Interval_59548 chr15 55208272 55210362 + 0 NA TTS (ENSMUSG00000022419.16) protein_coding-TTS (ENSMUSG00000022419.16) 53286 ENSMUSG00000095792.1 ENSMUSG00000095792 ENSMUST00000179457 Gm26296 snRNA Interval_124591 chr5 52128932 52129194 + 0 NA Intergenic Intergenic 6954 ENSMUSG00000098726.1 ENSMUSG00000098726 ENSMUST00000183815 Mir6417 miRNA Interval_68801 chr16 87013100 87013543 + 0 NA intron (ENSMUSG00000116555.1, intron 4 of 6) lincRNA-intron (ENSMUSG00000116555.1, intron 1 of 3) 35939 ENSMUSG00000116555.1 ENSMUSG00000116555 ENSMUST00000231899 Gm38477 lincRNA Interval_27547 chr11 68601775 68603210 + 0 NA Intergenic Intergenic 15471 ENSMUSG00000045915.15 ENSMUSG00000045915 ENSMUST00000102612 Ccdc42 protein_coding Interval_90571 chr2 31204477 31205222 + 0 NA intron (ENSMUSG00000000194.13, intron 1 of 1) protein_coding-intron (ENSMUSG00000000194.13, intron 14 of 17) 6498 ENSMUSG00000087430.1 ENSMUSG00000087430 ENSMUST00000146769 Gm13405 antisense Interval_28299 chr11 75012055 75013244 + 0 NA intron (ENSMUSG00000038290.15, intron 1 of 4) protein_coding-intron (ENSMUSG00000038290.15, intron 10 of 18) -19155 ENSMUSG00000101295.1 ENSMUSG00000101295 ENSMUST00000189608 Gm28180 antisense Interval_41853 chr13 3548112 3549329 + 0 NA intron (ENSMUSG00000021218.10, intron 2 of 3) protein_coding-intron (ENSMUSG00000021218.10, intron 1 of 9) -5319 ENSMUSG00000021218.10 ENSMUSG00000021218 ENSMUST00000221581 Gdi2 protein_coding Interval_116903 chr4 118108061 118108297 + 0 NA intron (ENSMUSG00000028538.12, intron 1 of 11) protein_coding-intron (ENSMUSG00000028538.12, intron 1 of 11) 53478 ENSMUSG00000033326.15 ENSMUSG00000033326 ENSMUST00000164821 Kdm4a protein_coding Interval_132077 chr5 142645571 142646227 + 0 NA intron (ENSMUSG00000029578.15, intron 2 of 5) protein_coding-intron (ENSMUSG00000029578.15, intron 2 of 11) 18201 ENSMUSG00000029578.15 ENSMUSG00000029578 ENSMUST00000143980 Wipi2 protein_coding Interval_58304 chr15 32078785 32079401 + 0 NA Intergenic Intergenic 29142 ENSMUSG00000115561.1 ENSMUSG00000115561 ENSMUST00000227417 Gm49285 TEC Interval_11090 chr1 179272133 179273670 + 0 NA intron (ENSMUSG00000055067.15, intron 5 of 11) protein_coding-intron (ENSMUSG00000055067.15, intron 5 of 11) 245104 ENSMUSG00000055067.15 ENSMUSG00000055067 ENSMUST00000194237 Smyd3 protein_coding Interval_127913 chr5 108987742 108988241 + 0 NA Intergenic Intergenic 15194 ENSMUSG00000093725.1 ENSMUSG00000093725 ENSMUST00000175736 Gm18595 processed_pseudogene Interval_14827 chr10 40328052 40328734 + 0 NA Intergenic Intergenic -5558 ENSMUSG00000111788.1 ENSMUSG00000111788 ENSMUST00000216371 Gm8948 processed_pseudogene Interval_32973 chr11 113450069 113450730 + 0 NA intron (ENSMUSG00000041654.15, intron 5 of 5) protein_coding-intron (ENSMUSG00000041654.15, intron 6 of 10) -17578 ENSMUSG00000078251.2 ENSMUSG00000078251 ENSMUST00000105048 Gm16487 pseudogene Interval_125578 chr5 72167112 72168663 + 0 NA intron (ENSMUSG00000029213.11, intron 1 of 5) protein_coding-intron (ENSMUSG00000029213.11, intron 1 of 4) 277 ENSMUSG00000029213.11 ENSMUSG00000029213 ENSMUST00000196241 Commd8 protein_coding Interval_77191 chr17 87236882 87237147 + 0 NA Intergenic Intergenic 28866 ENSMUSG00000024150.12 ENSMUSG00000024150 ENSMUST00000139258 Mcfd2 protein_coding Interval_66154 chr16 31991998 31992467 + 0 NA promoter-TSS (ENSMUSG00000080928.1) processed_pseudogene-promoter-TSS (ENSMUSG00000080928.1) -364 ENSMUSG00000080928.1 ENSMUSG00000080928 ENSMUST00000119503 Hmgb1-ps6 processed_pseudogene Interval_157216 chr8 68010262 68010854 + 0 NA TTS (ENSMUSG00000077545.1) snoRNA-TTS (ENSMUSG00000077545.1) 218 ENSMUSG00000077545.1 ENSMUSG00000077545 ENSMUST00000104357 Gm22018 snoRNA Interval_9021 chr1 153126529 153127345 + 0 NA promoter-TSS (ENSMUSG00000026479.13) protein_coding-promoter-TSS (ENSMUSG00000026479.13) 297 ENSMUSG00000026479.13 ENSMUSG00000026479 ENSMUST00000188831 Lamc2 protein_coding Interval_38796 chr12 82402352 82403257 + 0 NA intron (ENSMUSG00000042700.16, intron 10 of 21) protein_coding-intron (ENSMUSG00000042700.16, intron 9 of 20) 93733 ENSMUSG00000094374.2 ENSMUSG00000094374 ENSMUST00000179295 Gm5435 processed_pseudogene Interval_125230 chr5 65542970 65543588 + 0 NA exon (ENSMUSG00000107362.1, exon 1 of 1) TEC-exon (ENSMUSG00000107362.1, exon 1 of 1) 1350 ENSMUSG00000107362.1 ENSMUSG00000107362 ENSMUST00000202699 Gm40309 TEC Interval_152552 chr7 134272093 134273293 + 0 NA intron (ENSMUSG00000030994.16, intron 1 of 2) protein_coding-intron (ENSMUSG00000030994.16, intron 5 of 7) -40562 ENSMUSG00000054555.11 ENSMUSG00000054555 ENSMUST00000154144 Adam12 protein_coding Interval_166506 chr9 60196720 60197905 + 0 NA intron (ENSMUSG00000032289.15, intron 6 of 16) protein_coding-intron (ENSMUSG00000032289.15, intron 7 of 17) -136830 ENSMUSG00000111296.1 ENSMUSG00000111296 ENSMUST00000214235 2010001M07Rik antisense Interval_136785 chr6 60246658 60246826 + 0 NA Intergenic Intergenic -4050 ENSMUSG00000064515.1 ENSMUSG00000064515 ENSMUST00000082581 n-R5s162 rRNA Interval_76967 chr17 85239170 85239803 + 0 NA intron (ENSMUSG00000071037.6, intron 3 of 10) protein_coding-intron (ENSMUSG00000071037.6, intron 3 of 10) 148880 ENSMUSG00000071037.6 ENSMUSG00000071037 ENSMUST00000234501 Camkmt protein_coding Interval_141840 chr6 134854953 134856049 + 0 NA TTS (ENSMUSG00000032652.13) protein_coding-TTS (ENSMUSG00000032652.13) 4343 ENSMUSG00000032652.13 ENSMUSG00000032652 ENSMUST00000203742 Crebl2 protein_coding Interval_159391 chr8 94266247 94267126 + 0 NA promoter-TSS (ENSMUSG00000032939.14) protein_coding-promoter-TSS (ENSMUSG00000032939.14) -6740 ENSMUSG00000110442.1 ENSMUSG00000110442 ENSMUST00000212137 Gm45804 TEC Interval_110655 chr4 5728448 5728756 + 0 NA intron (ENSMUSG00000049119.14, intron 1 of 2) protein_coding-intron (ENSMUSG00000049119.14, intron 1 of 2) -40800 ENSMUSG00000077392.1 ENSMUSG00000077392 ENSMUST00000104204 Gm24337 snoRNA Interval_85729 chr19 30136915 30137225 + 0 NA intron (ENSMUSG00000024827.10, intron 10 of 18) protein_coding-intron (ENSMUSG00000024827.10, intron 10 of 24) 8161 ENSMUSG00000024827.10 ENSMUSG00000024827 ENSMUST00000235203 Gldc protein_coding Interval_170167 chr9 105833047 105833464 + 0 NA Intergenic Intergenic -5170 ENSMUSG00000043719.14 ENSMUSG00000043719 ENSMUST00000060896 Col6a6 protein_coding Interval_160787 chr8 112268364 112269917 + 0 NA Intergenic Intergenic -32174 ENSMUSG00000110435.1 ENSMUSG00000110435 ENSMUST00000212314 Gm3635 processed_pseudogene Interval_143547 chr7 12505258 12505534 + 0 NA Intergenic Intergenic -7121 ENSMUSG00000030385.4 ENSMUSG00000030385 ENSMUST00000032541 2900092C05Rik protein_coding Interval_63417 chr15 100936054 100937314 + 0 NA TTS (ENSMUSG00000023033.14) protein_coding-TTS (ENSMUSG00000023033.14) -33438 ENSMUSG00000023033.14 ENSMUSG00000023033 ENSMUST00000201246 Scn8a protein_coding Interval_64876 chr16 16907810 16908171 + 0 NA intron (ENSMUSG00000026181.13, intron 2 of 7) protein_coding-intron (ENSMUSG00000026181.13, intron 2 of 7) 3726 ENSMUSG00000116823.1 ENSMUSG00000116823 ENSMUST00000231277 Gm49595 antisense Interval_7516 chr1 131943145 131943626 + 0 NA Intergenic Intergenic -10415 ENSMUSG00000103975.1 ENSMUSG00000103975 ENSMUST00000195496 Gm37676 TEC Interval_88801 chr2 11209804 11209978 + 0 NA intron (ENSMUSG00000026778.13, intron 1 of 14) protein_coding-intron (ENSMUSG00000026778.13, intron 1 of 17) -16579 ENSMUSG00000103253.1 ENSMUSG00000103253 ENSMUST00000194883 Gm37520 TEC Interval_27174 chr11 63723387 63723665 + 0 NA Intergenic Intergenic 94774 ENSMUSG00000083142.1 ENSMUSG00000083142 ENSMUST00000121054 Gm12288 processed_pseudogene Interval_114220 chr4 68766947 68767130 + 0 NA intron (ENSMUSG00000028351.5, intron 7 of 7) protein_coding-intron (ENSMUSG00000028351.5, intron 7 of 7) 74369 ENSMUSG00000028351.5 ENSMUSG00000028351 ENSMUST00000140572 Brinp1 protein_coding Interval_174288 chrX 143543063 143544137 + 0 NA intron (ENSMUSG00000031284.16, intron 2 of 12) protein_coding-intron (ENSMUSG00000031284.16, intron 1 of 15) 129702 ENSMUSG00000088047.1 ENSMUSG00000088047 ENSMUST00000157422 Gm23325 snoRNA Interval_123828 chr5 35789473 35791179 + 0 NA intron (ENSMUSG00000029095.17, intron 1 of 21) protein_coding-intron (ENSMUSG00000029095.17, intron 1 of 19) -50339 ENSMUSG00000036553.16 ENSMUSG00000036553 ENSMUST00000154118 Sh3tc1 protein_coding Interval_108313 chr3 123590966 123591744 + 0 NA intron (ENSMUSG00000027977.15, intron 3 of 6) protein_coding-intron (ENSMUSG00000027977.15, intron 5 of 12) -31226 ENSMUSG00000027977.15 ENSMUSG00000027977 ENSMUST00000132896 Ndst3 protein_coding Interval_9127 chr1 153880314 153880766 + 0 NA intron (ENSMUSG00000045968.7, intron 1 of 2) protein_coding-intron (ENSMUSG00000045968.7, intron 1 of 2) 6195 ENSMUSG00000043282.3 ENSMUSG00000043282 ENSMUST00000055314 Teddm1b protein_coding Interval_41961 chr13 5620996 5621941 + 0 NA intron (ENSMUSG00000114053.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000114053.1, intron 1 of 1) -50340 ENSMUSG00000114053.1 ENSMUSG00000114053 ENSMUST00000223254 Gm35330 lincRNA Interval_57927 chr15 25518242 25518493 + 0 NA Intergenic Intergenic -72727 ENSMUSG00000115850.1 ENSMUSG00000115850 ENSMUST00000226289 Gm48956 lincRNA Interval_104138 chr3 58982870 58983588 + 0 NA Intergenic Intergenic -3941 ENSMUSG00000059776.7 ENSMUSG00000059776 ENSMUST00000079761 Rpl13-ps6 processed_pseudogene Interval_153784 chr8 8560644 8561167 + 0 NA Intergenic Intergenic -15617 ENSMUSG00000108932.1 ENSMUSG00000108932 ENSMUST00000208799 Gm31463 lincRNA Interval_7788 chr1 133693781 133696364 + 0 NA Intergenic Intergenic -4986 ENSMUSG00000051998.14 ENSMUSG00000051998 ENSMUST00000189524 Lax1 protein_coding Interval_46614 chr13 67590579 67590984 + 0 NA exon (ENSMUSG00000058093.13, exon 4 of 4) protein_coding-exon (ENSMUSG00000058093.13, exon 4 of 4) 18864 ENSMUSG00000058093.13 ENSMUSG00000058093 ENSMUST00000138725 Zfp729b protein_coding Interval_58026 chr15 26552304 26553490 + 0 NA exon (ENSMUSG00000043556.10, exon 3 of 4) protein_coding-exon (ENSMUSG00000043556.10, exon 3 of 4) -56606 ENSMUSG00000115433.1 ENSMUSG00000115433 ENSMUST00000228205 Gm49267 antisense Interval_113013 chr4 46855140 46855674 + 0 NA intron (ENSMUSG00000039809.10, intron 2 of 18) protein_coding-intron (ENSMUSG00000039809.10, intron 2 of 18) 4495 ENSMUSG00000039809.10 ENSMUSG00000039809 ENSMUST00000206773 Gabbr2 protein_coding Interval_99894 chr2 165659159 165659625 + 0 NA intron (ENSMUSG00000017897.18, intron 1 of 7) protein_coding-intron (ENSMUSG00000017897.18, intron 1 of 15) 4074 ENSMUSG00000017897.18 ENSMUSG00000017897 ENSMUST00000128280 Eya2 protein_coding Interval_110903 chr4 9843046 9844955 + 0 NA promoter-TSS (ENSMUSG00000051279.2) protein_coding-promoter-TSS (ENSMUSG00000051279.2) -372 ENSMUSG00000051279.2 ENSMUSG00000051279 ENSMUST00000057613 Gdf6 protein_coding Interval_7496 chr1 131846252 131846610 + 0 NA intron (ENSMUSG00000013275.9, intron 3 of 3) protein_coding-intron (ENSMUSG00000013275.9, intron 10 of 10) 3591 ENSMUSG00000013275.9 ENSMUSG00000013275 ENSMUST00000146360 Slc41a1 protein_coding Interval_161089 chr8 117386280 117386574 + 0 NA intron (ENSMUSG00000034390.16, intron 3 of 10) protein_coding-intron (ENSMUSG00000034390.16, intron 3 of 20) -36989 ENSMUSG00000034390.16 ENSMUSG00000034390 ENSMUST00000212884 Cmip protein_coding Interval_93050 chr2 69822118 69823518 + 0 NA intron (ENSMUSG00000042155.3, intron 1 of 3) protein_coding-intron (ENSMUSG00000042155.3, intron 1 of 3) -1536 ENSMUSG00000042155.3 ENSMUSG00000042155 ENSMUST00000152898 Klhl23 protein_coding Interval_37470 chr12 69183535 69185074 + 0 NA promoter-TSS (ENSMUSG00000049751.6) protein_coding-promoter-TSS (ENSMUSG00000049751.6) 147 ENSMUSG00000043998.10 ENSMUSG00000043998 ENSMUST00000060579 Mgat2 protein_coding Interval_44 GL456212.1 63649 64052 + 0 NA NA NA NA NA Interval_23272 chr11 21090973 21091975 + 0 NA promoter-TSS (ENSMUSG00000020134.13) protein_coding-promoter-TSS (ENSMUSG00000020134.13) 183 ENSMUSG00000020134.13 ENSMUSG00000020134 ENSMUST00000101477 Peli1 protein_coding Interval_146799 chr7 51816429 51816717 + 0 NA Intergenic Intergenic -33731 ENSMUSG00000108842.1 ENSMUSG00000108842 ENSMUST00000208279 Gm45001 TEC Interval_22123 chr11 6486890 6488566 + 0 NA intron (ENSMUSG00000086839.7, intron 2 of 2) antisense-intron (ENSMUSG00000086839.7, intron 1 of 2) -11811 ENSMUSG00000094483.2 ENSMUSG00000094483 ENSMUST00000179343 Purb protein_coding Interval_134674 chr6 30281602 30282302 + 0 NA intron (ENSMUSG00000039159.16, intron 1 of 4) protein_coding-intron (ENSMUSG00000039159.16, intron 1 of 4) 22576 ENSMUSG00000039159.16 ENSMUSG00000039159 ENSMUST00000148744 Ube2h protein_coding Interval_116943 chr4 118350149 118350855 + 0 NA Intergenic Intergenic -9488 ENSMUSG00000006395.16 ENSMUSG00000006395 ENSMUST00000132882 Hyi polymorphic_pseudogene Interval_128622 chr5 114351134 114351970 + 0 NA intron (ENSMUSG00000066952.11, intron 18 of 30) protein_coding-intron (ENSMUSG00000066952.11, intron 18 of 28) 18655 ENSMUSG00000001098.15 ENSMUSG00000001098 ENSMUST00000123538 Kctd10 protein_coding Interval_124302 chr5 43754851 43755398 + 0 NA promoter-TSS (ENSMUSG00000104728.1) TEC-promoter-TSS (ENSMUSG00000104728.1) -853 ENSMUSG00000104728.1 ENSMUSG00000104728 ENSMUST00000196543 Gm42462 TEC Interval_3820 chr1 63255293 63256369 + 0 NA Intergenic Intergenic -7332 ENSMUSG00000102536.1 ENSMUSG00000102536 ENSMUST00000194370 1700039I01Rik TEC Interval_43288 chr13 28780100 28782137 + 0 NA intron (ENSMUSG00000085936.7, intron 2 of 7) processed_transcript-intron (ENSMUSG00000085936.7, intron 1 of 5) -46005 ENSMUSG00000092093.1 ENSMUSG00000092093 ENSMUST00000171026 Gm17528 pseudogene Interval_69430 chr16 93333820 93334628 + 0 NA Intergenic Intergenic 31166 ENSMUSG00000100277.8 ENSMUSG00000100277 ENSMUST00000231338 1810053B23Rik processed_transcript Interval_80845 chr18 49226071 49226357 + 0 NA Intergenic Intergenic -102041 ENSMUSG00000117724.1 ENSMUSG00000117724 ENSMUST00000235797 Gm50231 processed_pseudogene Interval_13698 chr10 21129981 21131283 + 0 NA intron (ENSMUSG00000019982.15, intron 15 of 15) protein_coding-intron (ENSMUSG00000019982.15, intron 14 of 14) -14462 ENSMUSG00000097923.1 ENSMUSG00000097923 ENSMUST00000180680 Gm26577 antisense Interval_86810 chr19 44007134 44008106 + 0 NA intron (ENSMUSG00000025197.9, intron 7 of 7) protein_coding-intron (ENSMUSG00000025197.9, intron 7 of 8) 21588 ENSMUSG00000025197.9 ENSMUSG00000025197 ENSMUST00000211830 Cyp2c23 protein_coding Interval_121203 chr4 154019538 154020008 + 0 NA TTS (ENSMUSG00000029028.14) protein_coding-TTS (ENSMUSG00000029028.14) 5843 ENSMUSG00000078350.11 ENSMUSG00000078350 ENSMUST00000126624 Smim1 protein_coding Interval_123495 chr5 32921225 32921763 + 0 NA intron (ENSMUSG00000037426.18, intron 21 of 32) protein_coding-intron (ENSMUSG00000037426.18, intron 21 of 32) 7863 ENSMUSG00000089080.1 ENSMUSG00000089080 ENSMUST00000158455 Gm24003 snRNA Interval_23143 chr11 20157674 20158353 + 0 NA Intergenic Intergenic -11669 ENSMUSG00000085035.1 ENSMUSG00000085035 ENSMUST00000156150 Gm12031 lincRNA Interval_151882 chr7 127286142 127286413 + 0 NA exon (ENSMUSG00000090460.3, exon 1 of 1) processed_pseudogene-exon (ENSMUSG00000090460.3, exon 1 of 1) 108 ENSMUSG00000090460.3 ENSMUSG00000090460 ENSMUST00000172206 Gm17511 processed_pseudogene Interval_79409 chr18 31719485 31720260 + 0 NA intron (ENSMUSG00000024260.14, intron 19 of 20) protein_coding-intron (ENSMUSG00000024260.14, intron 19 of 20) -18843 ENSMUSG00000117533.1 ENSMUSG00000117533 ENSMUST00000234849 Gm50060 processed_pseudogene Interval_133857 chr6 13582289 13583368 + 0 NA exon (ENSMUSG00000029569.9, exon 5 of 5) protein_coding-exon (ENSMUSG00000029569.9, exon 5 of 5) 25216 ENSMUSG00000029569.9 ENSMUSG00000029569 ENSMUST00000138637 Tmem168 protein_coding Interval_70138 chr17 5733138 5734058 + 0 NA intron (ENSMUSG00000034265.8, intron 8 of 8) protein_coding-intron (ENSMUSG00000034265.8, intron 8 of 8) -65893 ENSMUSG00000096965.7 ENSMUSG00000096965 ENSMUST00000181392 3300005D01Rik lincRNA Interval_98061 chr2 147312317 147312884 + 0 NA intron (ENSMUSG00000086509.2, intron 5 of 5) antisense-intron (ENSMUSG00000086509.2, intron 5 of 5) 5419 ENSMUSG00000098763.1 ENSMUSG00000098763 ENSMUST00000184407 Nkx2-2os misc_RNA Interval_2262 chr1 37478900 37479279 + 0 NA intron (ENSMUSG00000026110.15, intron 4 of 14) protein_coding-intron (ENSMUSG00000026110.15, intron 4 of 14) 9516 ENSMUSG00000103948.1 ENSMUSG00000103948 ENSMUST00000192316 4930594C11Rik TEC Interval_101139 chr2 178413191 178415170 + 0 NA promoter-TSS (ENSMUSG00000070476.10) protein_coding-promoter-TSS (ENSMUSG00000070476.10) 292 ENSMUSG00000049999.4 ENSMUSG00000049999 ENSMUST00000058678 Ppp1r3d protein_coding Interval_40420 chr12 104761125 104762011 + 0 NA Intergenic Intergenic -39516 ENSMUSG00000041415.10 ENSMUSG00000041415 ENSMUST00000222002 Dicer1 protein_coding Interval_62999 chr15 98585473 98586436 + 0 NA intron (ENSMUSG00000022993.7, intron 2 of 3) protein_coding-intron (ENSMUSG00000022993.7, intron 2 of 3) -4036 ENSMUSG00000100220.1 ENSMUSG00000100220 ENSMUST00000187215 Gm29331 antisense Interval_166733 chr9 62325748 62326191 + 0 NA intron (ENSMUSG00000111193.1, intron 6 of 7) lincRNA-intron (ENSMUSG00000111193.1, intron 6 of 7) -16495 ENSMUSG00000032249.14 ENSMUSG00000032249 ENSMUST00000145679 Anp32a protein_coding Interval_101645 chr3 8488798 8489455 + 0 NA Intergenic Intergenic -20460 ENSMUSG00000027500.10 ENSMUSG00000027500 ENSMUST00000194307 Stmn2 protein_coding Interval_104683 chr3 69389447 69389670 + 0 NA intron (ENSMUSG00000027784.10, intron 1 of 3) protein_coding-intron (ENSMUSG00000027784.10, intron 1 of 3) 42810 ENSMUSG00000090743.1 ENSMUSG00000090743 ENSMUST00000165161 Gm17213 processed_pseudogene Interval_165568 chr9 49564633 49565186 + 0 NA exon (ENSMUSG00000039542.16, exon 7 of 16) protein_coding-exon (ENSMUSG00000039542.16, exon 7 of 16) 46621 ENSMUSG00000079564.3 ENSMUSG00000079564 ENSMUST00000215070 Gm11149 antisense Interval_27571 chr11 68782415 68783560 + 0 NA promoter-TSS (ENSMUSG00000020900.15) protein_coding-promoter-TSS (ENSMUSG00000020900.15) 77009 ENSMUSG00000018736.14 ENSMUSG00000018736 ENSMUST00000127469 Ndel1 protein_coding Interval_54937 chr14 76357488 76358429 + 0 NA Intergenic Intergenic -60870 ENSMUSG00000022010.19 ENSMUSG00000022010 ENSMUST00000133224 Tsc22d1 protein_coding Interval_85652 chr19 29354709 29355979 + 0 NA intron (ENSMUSG00000016495.12, intron 2 of 2) protein_coding-intron (ENSMUSG00000016495.12, intron 4 of 6) 6063 ENSMUSG00000016495.12 ENSMUSG00000016495 ENSMUST00000139176 Plgrkt protein_coding Interval_148516 chr7 82052547 82052755 + 0 NA Intergenic Intergenic -17736 ENSMUSG00000109145.1 ENSMUSG00000109145 ENSMUST00000208972 Gm20744 lincRNA Interval_96657 chr2 126926578 126927165 + 0 NA exon (ENSMUSG00000027366.12, exon 3 of 15) protein_coding-exon (ENSMUSG00000027366.12, exon 3 of 15) -6526 ENSMUSG00000027366.12 ENSMUSG00000027366 ENSMUST00000125592 Sppl2a protein_coding Interval_159293 chr8 92863147 92863539 + 0 NA intron (ENSMUSG00000033192.5, intron 1 of 11) protein_coding-intron (ENSMUSG00000033192.5, intron 1 of 13) -7009 ENSMUSG00000109669.1 ENSMUSG00000109669 ENSMUST00000211295 Gm45472 antisense Interval_67056 chr16 42275561 42277566 + 0 NA promoter-TSS (ENSMUSG00000047261.9) protein_coding-promoter-TSS (ENSMUSG00000047261.9) -491 ENSMUSG00000047261.9 ENSMUSG00000047261 ENSMUST00000125187 Gap43 protein_coding Interval_59001 chr15 41603199 41604259 + 0 NA intron (ENSMUSG00000022307.16, intron 2 of 15) protein_coding-intron (ENSMUSG00000022307.16, intron 2 of 15) 185182 ENSMUSG00000097232.1 ENSMUSG00000097232 ENSMUST00000180418 Gm26854 antisense Interval_68984 chr16 89940479 89941085 + 0 NA intron (ENSMUSG00000002489.16, intron 2 of 27) protein_coding-intron (ENSMUSG00000002489.16, intron 2 of 27) -145500 ENSMUSG00000002489.16 ENSMUSG00000002489 ENSMUST00000136760 Tiam1 protein_coding Interval_143902 chr7 17040646 17040864 + 0 NA intron (ENSMUSG00000004328.15, intron 12 of 14) protein_coding-intron (ENSMUSG00000004328.15, intron 12 of 14) -12861 ENSMUSG00000003099.11 ENSMUSG00000003099 ENSMUST00000145997 Ppp5c protein_coding Interval_170267 chr9 106572595 106574113 + 0 NA Intergenic Intergenic -2358 ENSMUSG00000041009.8 ENSMUSG00000041009 ENSMUST00000085111 Iqcf4 protein_coding Interval_43660 chr13 34651337 34653581 + 0 NA promoter-TSS (ENSMUSG00000086786.1) antisense-promoter-TSS (ENSMUSG00000086786.1) -464 ENSMUSG00000086786.1 ENSMUSG00000086786 ENSMUST00000154345 Gm15908 antisense Interval_136325 chr6 53049566 53049779 + 0 NA intron (ENSMUSG00000063568.11, intron 1 of 4) protein_coding-intron (ENSMUSG00000063568.11, intron 1 of 4) 3788 ENSMUSG00000080759.1 ENSMUSG00000080759 ENSMUST00000119487 Gm15573 processed_pseudogene Interval_75449 chr17 66611564 66612332 + 0 NA Intergenic Intergenic 13094 ENSMUSG00000117186.1 ENSMUSG00000117186 ENSMUST00000233257 Gm46576 processed_pseudogene Interval_19055 chr10 94115528 94116957 + 0 NA intron (ENSMUSG00000020021.4, intron 8 of 20) protein_coding-intron (ENSMUSG00000020021.4, intron 8 of 20) 7503 ENSMUSG00000111539.1 ENSMUSG00000111539 ENSMUST00000214721 Gm48372 TEC Interval_143105 chr6 149373658 149373987 + 0 NA Intergenic Intergenic 12136 ENSMUSG00000081126.1 ENSMUSG00000081126 ENSMUST00000120260 Gm15784 processed_pseudogene Interval_159392 chr8 94268312 94268781 + 0 NA promoter-TSS (ENSMUSG00000032939.14) protein_coding-promoter-TSS (ENSMUSG00000032939.14) -4880 ENSMUSG00000110442.1 ENSMUSG00000110442 ENSMUST00000212137 Gm45804 TEC Interval_108423 chr3 127005110 127005574 + 0 NA promoter-TSS (ENSMUSG00000077617.1) snoRNA-promoter-TSS (ENSMUSG00000077617.1) -27 ENSMUSG00000077617.1 ENSMUSG00000077617 ENSMUST00000104429 Gm25501 snoRNA Interval_166545 chr9 60787430 60788486 + 0 NA Intergenic Intergenic -6667 ENSMUSG00000034485.10 ENSMUSG00000034485 ENSMUST00000216574 Uaca protein_coding Interval_89611 chr2 23213630 23213926 + 0 NA intron (ENSMUSG00000026774.11, intron 3 of 10) protein_coding-intron (ENSMUSG00000026774.11, intron 3 of 10) 6281 ENSMUSG00000026774.11 ENSMUSG00000026774 ENSMUST00000114505 Potegl protein_coding Interval_26889 chr11 61319347 61320103 + 0 NA intron (ENSMUSG00000069855.9, intron 8 of 14) protein_coding-intron (ENSMUSG00000069855.9, intron 8 of 16) -15036 ENSMUSG00000064718.1 ENSMUSG00000064718 ENSMUST00000082784 Gm25929 snRNA Interval_55704 chr14 99144370 99144942 + 0 NA intron (ENSMUSG00000022064.10, intron 9 of 13) protein_coding-intron (ENSMUSG00000022064.10, intron 9 of 17) 32979 ENSMUSG00000115071.1 ENSMUSG00000115071 ENSMUST00000226897 Gm49026 TEC Interval_111798 chr4 29582115 29582659 + 0 NA Intergenic Intergenic 92231 ENSMUSG00000082058.1 ENSMUSG00000082058 ENSMUST00000118135 Gm11923 processed_pseudogene Interval_129747 chr5 122101037 122101572 + 0 NA promoter-TSS (ENSMUSG00000013936.12) protein_coding-promoter-TSS (ENSMUSG00000013936.12) 272 ENSMUSG00000013936.12 ENSMUSG00000013936 ENSMUST00000126006 Myl2 protein_coding Interval_34652 chr12 8366566 8366899 + 0 NA Intergenic Intergenic -27477 ENSMUSG00000112452.1 ENSMUSG00000112452 ENSMUST00000218567 Gm48075 lincRNA Interval_85503 chr19 27600126 27602036 + 0 NA Intergenic Intergenic 88573 ENSMUSG00000118072.1 ENSMUSG00000118072 ENSMUST00000235994 Gm50101 processed_pseudogene Interval_50692 chr14 18284736 18285304 + 0 NA TTS (ENSMUSG00000021774.13) protein_coding-TTS (ENSMUSG00000021774.13) 13756 ENSMUSG00000021772.15 ENSMUSG00000021772 ENSMUST00000156186 Nkiras1 protein_coding Interval_65778 chr16 28801726 28803020 + 0 NA Intergenic Intergenic 33994 ENSMUSG00000051065.9 ENSMUSG00000051065 ENSMUST00000232571 Mb21d2 protein_coding Interval_15201 chr10 43310876 43311644 + 0 NA intron (ENSMUSG00000038240.13, intron 2 of 2) protein_coding-intron (ENSMUSG00000038240.13, intron 2 of 7) -8100 ENSMUSG00000089673.1 ENSMUSG00000089673 ENSMUST00000159442 Gm16546 processed_pseudogene Interval_163282 chr9 20562081 20562409 + 0 NA Intergenic Intergenic 6916 ENSMUSG00000111661.1 ENSMUSG00000111661 ENSMUST00000213332 Gm46142 processed_pseudogene Interval_160186 chr8 107002305 107002921 + 0 NA intron (ENSMUSG00000041308.6, intron 5 of 5) protein_coding-intron (ENSMUSG00000041308.6, intron 5 of 5) 6998 ENSMUSG00000088969.1 ENSMUSG00000088969 ENSMUST00000158344 Gm22085 snRNA Interval_42370 chr13 12421979 12422287 + 0 NA exon (ENSMUSG00000050244.9, exon 27 of 45) protein_coding-exon (ENSMUSG00000050244.9, exon 27 of 45) 3472 ENSMUSG00000113931.1 ENSMUSG00000113931 ENSMUST00000221839 Gm5928 processed_pseudogene Interval_77287 chr17 87809305 87810147 + 0 NA Intergenic Intergenic -11732 ENSMUSG00000050138.8 ENSMUSG00000050138 ENSMUST00000055221 Kcnk12 protein_coding Interval_78683 chr18 17231536 17232171 + 0 NA Intergenic Intergenic 3600 ENSMUSG00000117460.1 ENSMUSG00000117460 ENSMUST00000234739 4921533I20Rik transcribed_processed_pseudogene Interval_148893 chr7 89883477 89884791 + 0 NA intron (ENSMUSG00000039391.11, intron 7 of 15) protein_coding-intron (ENSMUSG00000039391.11, intron 7 of 14) 19495 ENSMUSG00000039391.11 ENSMUSG00000039391 ENSMUST00000041195 Ccdc81 protein_coding Interval_162418 chr8 128489533 128489893 + 0 NA intron (ENSMUSG00000025810.9, intron 12 of 16) protein_coding-intron (ENSMUSG00000025810.9, intron 12 of 16) 130316 ENSMUSG00000025810.9 ENSMUSG00000025810 ENSMUST00000212933 Nrp1 protein_coding Interval_45099 chr13 52141631 52142227 + 0 NA Intergenic Intergenic -38482 ENSMUSG00000113399.1 ENSMUSG00000113399 ENSMUST00000222876 Gm48199 lincRNA Interval_82880 chr18 78175911 78176193 + 0 NA intron (ENSMUSG00000024552.16, intron 12 of 21) protein_coding-intron (ENSMUSG00000024552.16, intron 9 of 18) -33933 ENSMUSG00000059336.14 ENSMUSG00000059336 ENSMUST00000160639 Slc14a1 protein_coding Interval_166268 chr9 57903302 57903507 + 0 NA Intergenic Intergenic -9230 ENSMUSG00000055720.10 ENSMUSG00000055720 ENSMUST00000215936 Ubl7 protein_coding Interval_99532 chr2 162998339 163000047 + 0 NA exon (ENSMUSG00000017868.16, exon 10 of 14) protein_coding-exon (ENSMUSG00000017868.16, exon 10 of 14) 1081 ENSMUSG00000017868.16 ENSMUSG00000017868 ENSMUST00000139053 Sgk2 protein_coding Interval_44399 chr13 44624196 44625410 + 0 NA intron (ENSMUSG00000113730.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000113730.1, intron 1 of 1) 2621 ENSMUSG00000113730.1 ENSMUSG00000113730 ENSMUST00000221956 Gm47805 lincRNA Interval_125421 chr5 66981223 66981484 + 0 NA intron (ENSMUSG00000037736.20, intron 1 of 3) protein_coding-intron (ENSMUSG00000037736.20, intron 3 of 20) 4288 ENSMUSG00000085839.1 ENSMUSG00000085839 ENSMUST00000129485 Gm15949 antisense Interval_14532 chr10 35037715 35038105 + 0 NA intron (ENSMUSG00000111042.1, intron 2 of 3) transcribed_processed_pseudogene-intron (ENSMUSG00000111042.1, intron 2 of 3) -74288 ENSMUSG00000077749.1 ENSMUSG00000077749 ENSMUST00000104561 Gm26341 snoRNA Interval_23228 chr11 20690021 20691609 + 0 NA intron (ENSMUSG00000049659.15, intron 7 of 7) protein_coding-intron (ENSMUSG00000049659.15, intron 8 of 8) -38605 ENSMUSG00000084252.1 ENSMUSG00000084252 ENSMUST00000120008 Gm12036 processed_pseudogene Interval_130069 chr5 124062101 124063505 + 0 NA exon (ENSMUSG00000029408.13, exon 12 of 12) protein_coding-exon (ENSMUSG00000029408.13, exon 12 of 12) -10451 ENSMUSG00000104818.1 ENSMUSG00000104818 ENSMUST00000199099 Gm43661 lincRNA Interval_169750 chr9 100934795 100935471 + 0 NA intron (ENSMUSG00000037286.15, intron 18 of 25) protein_coding-intron (ENSMUSG00000037286.15, intron 25 of 32) -20636 ENSMUSG00000037286.15 ENSMUSG00000037286 ENSMUST00000191345 Stag1 protein_coding Interval_13139 chr10 12338340 12339125 + 0 NA Intergenic Intergenic -9508 ENSMUSG00000112131.1 ENSMUSG00000112131 ENSMUST00000218657 Gm48724 lincRNA Interval_129234 chr5 118353061 118354275 + 0 NA Intergenic Intergenic 43662 ENSMUSG00000106812.1 ENSMUSG00000106812 ENSMUST00000201179 Gm28563 lincRNA Interval_20650 chr10 119986342 119986632 + 0 NA intron (ENSMUSG00000034813.18, intron 10 of 23) protein_coding-intron (ENSMUSG00000034813.18, intron 10 of 22) 126378 ENSMUSG00000020228.11 ENSMUSG00000020228 ENSMUST00000154501 Helb protein_coding Interval_173774 chrX 103965605 103965929 + 0 NA intron (ENSMUSG00000056537.11, intron 3 of 4) protein_coding-intron (ENSMUSG00000056537.11, intron 3 of 4) 15517 ENSMUSG00000056537.11 ENSMUSG00000056537 ENSMUST00000135101 Rlim protein_coding Interval_107815 chr3 115712493 115713042 + 0 NA exon (ENSMUSG00000045092.8, exon 2 of 2) protein_coding-exon (ENSMUSG00000045092.8, exon 2 of 2) 2305 ENSMUSG00000045092.8 ENSMUSG00000045092 ENSMUST00000055676 S1pr1 protein_coding Interval_156165 chr8 45363471 45364190 + 0 NA intron (ENSMUSG00000070044.15, intron 1 of 13) protein_coding-intron (ENSMUSG00000070044.15, intron 1 of 13) -5068 ENSMUSG00000070044.15 ENSMUSG00000070044 ENSMUST00000155230 Fam149a protein_coding Interval_141967 chr6 136135499 136135886 + 0 NA intron (ENSMUSG00000030209.14, intron 1 of 1) protein_coding-intron (ENSMUSG00000030209.14, intron 2 of 13) -37369 ENSMUSG00000097496.1 ENSMUSG00000097496 ENSMUST00000181537 Gm26653 antisense Interval_150168 chr7 107560595 107560778 + 0 NA Intergenic Intergenic -7080 ENSMUSG00000051041.8 ENSMUSG00000051041 ENSMUST00000239087 Olfml1 protein_coding Interval_113227 chr4 50620253 50621896 + 0 NA Intergenic Intergenic 334328 ENSMUSG00000095394.1 ENSMUSG00000095394 ENSMUST00000104120 Gm25485 snoRNA Interval_10573 chr1 171948375 171949955 + 0 NA TTS (ENSMUSG00000015314.10) protein_coding-TTS (ENSMUSG00000015314.10) -29809 ENSMUSG00000104413.1 ENSMUSG00000104413 ENSMUST00000191636 Gm37065 antisense Interval_173003 chrX 61393166 61393414 + 0 NA Intergenic Intergenic 4263 ENSMUSG00000082092.1 ENSMUSG00000082092 ENSMUST00000122294 Gm14665 processed_pseudogene Interval_82721 chr18 76189142 76189603 + 0 NA Intergenic Intergenic 18820 ENSMUSG00000098276.1 ENSMUSG00000098276 ENSMUST00000184549 Mir6358 miRNA Interval_126142 chr5 78965503 78965786 + 0 NA Intergenic Intergenic 185785 ENSMUSG00000077178.1 ENSMUSG00000077178 ENSMUST00000103990 Gm25756 snoRNA Interval_168632 chr9 84526377 84526851 + 0 NA Intergenic Intergenic -51346 ENSMUSG00000111245.1 ENSMUSG00000111245 ENSMUST00000214502 Gm39388 lincRNA Interval_139334 chr6 99009749 99010120 + 0 NA TTS (ENSMUSG00000030067.17) protein_coding-TTS (ENSMUSG00000030067.17) 34508 ENSMUSG00000030067.17 ENSMUSG00000030067 ENSMUST00000175838 Foxp1 protein_coding Interval_145782 chr7 38251360 38252373 + 0 NA Intergenic Intergenic 19461 ENSMUSG00000030423.7 ENSMUSG00000030423 ENSMUST00000206045 Pop4 protein_coding Interval_15872 chr10 58627586 58628087 + 0 NA intron (ENSMUSG00000003227.4, intron 4 of 11) protein_coding-intron (ENSMUSG00000003227.4, intron 4 of 11) 47818 ENSMUSG00000003227.4 ENSMUSG00000003227 ENSMUST00000003312 Edar protein_coding Interval_125077 chr5 64296387 64297165 + 0 NA intron (ENSMUSG00000029174.18, intron 13 of 20) protein_coding-intron (ENSMUSG00000029174.18, intron 14 of 21) -23480 ENSMUSG00000083100.1 ENSMUSG00000083100 ENSMUST00000121819 Gm6044 processed_pseudogene Interval_45187 chr13 53068707 53069625 + 0 NA Intergenic Intergenic 40248 ENSMUSG00000112952.1 ENSMUSG00000112952 ENSMUST00000222184 Gm48336 lincRNA Interval_174113 chrX 135561079 135561333 + 0 NA Intergenic Intergenic 11996 ENSMUSG00000096119.1 ENSMUSG00000096119 ENSMUST00000178856 Gm6228 transcribed_unprocessed_pseudogene Interval_143326 chr7 5368195 5368825 + 0 NA Intergenic Intergenic 15024 ENSMUSG00000108904.1 ENSMUSG00000108904 ENSMUST00000207410 Gm45147 processed_pseudogene Interval_111485 chr4 22067818 22068694 + 0 NA Intergenic Intergenic 49276 ENSMUSG00000082490.1 ENSMUSG00000082490 ENSMUST00000117612 Gm11880 processed_pseudogene Interval_79844 chr18 35542408 35542810 + 0 NA Intergenic Intergenic 6026 ENSMUSG00000062742.4 ENSMUSG00000062742 ENSMUST00000081864 Gm5239 processed_pseudogene Interval_40777 chr12 108301373 108302520 + 0 NA Intergenic Intergenic -4602 ENSMUSG00000021260.8 ENSMUSG00000021260 ENSMUST00000223395 Hhipl1 protein_coding Interval_40920 chr12 109910532 109910830 + 0 NA Intergenic Intergenic -1104 ENSMUSG00000112940.1 ENSMUSG00000112940 ENSMUST00000223541 4930511J24Rik lincRNA Interval_110447 chr3 158259944 158260141 + 0 NA intron (ENSMUSG00000028176.13, intron 7 of 24) protein_coding-intron (ENSMUSG00000028176.13, intron 8 of 27) -34372 ENSMUSG00000106448.1 ENSMUSG00000106448 ENSMUST00000196431 Gm43486 TEC Interval_85361 chr19 25198323 25198793 + 0 NA intron (ENSMUSG00000052085.7, intron 46 of 47) protein_coding-intron (ENSMUSG00000052085.7, intron 46 of 47) -32342 ENSMUSG00000065634.1 ENSMUSG00000065634 ENSMUST00000083700 Gm24252 snoRNA Interval_44548 chr13 45963484 45966271 + 0 NA promoter-TSS (ENSMUSG00000038152.4) lincRNA-promoter-TSS (ENSMUSG00000038152.4) 99 ENSMUSG00000046876.16 ENSMUSG00000046876 ENSMUST00000222610 Atxn1 protein_coding Interval_42507 chr13 14260107 14261528 + 0 NA intron (ENSMUSG00000021301.9, intron 15 of 17) protein_coding-intron (ENSMUSG00000021301.9, intron 23 of 28) -38879 ENSMUSG00000113563.1 ENSMUSG00000113563 ENSMUST00000221355 Gm2492 processed_pseudogene Interval_171460 chr9 118486530 118490071 + 0 NA intron (ENSMUSG00000110692.1, intron 2 of 4) antisense-intron (ENSMUSG00000110692.1, intron 2 of 4) 799 ENSMUSG00000110692.1 ENSMUSG00000110692 ENSMUST00000212286 Gm33460 antisense Interval_65056 chr16 18738064 18740008 + 0 NA Intergenic Intergenic -37811 ENSMUSG00000041378.2 ENSMUSG00000041378 ENSMUST00000043577 Cldn5 protein_coding Interval_164217 chr9 32671919 32673011 + 0 NA intron (ENSMUSG00000032035.16, intron 3 of 9) protein_coding-intron (ENSMUSG00000032035.16, intron 3 of 3) 36217 ENSMUSG00000032035.16 ENSMUSG00000032035 ENSMUST00000184364 Ets1 protein_coding Interval_57491 chr15 11756418 11757239 + 0 NA Intergenic Intergenic -53125 ENSMUSG00000115585.1 ENSMUSG00000115585 ENSMUST00000228108 Gm41271 processed_transcript Interval_142819 chr6 146158043 146158705 + 0 NA intron (ENSMUSG00000030287.15, intron 52 of 55) protein_coding-intron (ENSMUSG00000030287.15, intron 53 of 56) 74105 ENSMUSG00000030287.15 ENSMUSG00000030287 ENSMUST00000111673 Itpr2 protein_coding Interval_606 chr1 8760247 8760785 + 0 NA intron (ENSMUSG00000025909.16, intron 5 of 8) protein_coding-intron (ENSMUSG00000025909.16, intron 2 of 16) 31646 ENSMUSG00000084353.1 ENSMUSG00000084353 ENSMUST00000119877 Gm15452 processed_pseudogene Interval_10286 chr1 168026012 168026854 + 0 NA intron (ENSMUSG00000093538.2, intron 1 of 2) antisense-intron (ENSMUSG00000093538.2, intron 1 of 2) 22294 ENSMUSG00000093538.2 ENSMUSG00000093538 ENSMUST00000177351 Gm20711 antisense Interval_96496 chr2 125104430 125104841 + 0 NA promoter-TSS (ENSMUSG00000065851.1) snRNA-promoter-TSS (ENSMUSG00000065851.1) -374 ENSMUSG00000065851.1 ENSMUSG00000065851 ENSMUST00000083917 Gm22352 snRNA Interval_149709 chr7 100834136 100835352 + 0 NA intron (ENSMUSG00000029461.17, intron 6 of 7) protein_coding-intron (ENSMUSG00000029461.17, intron 7 of 8) 20685 ENSMUSG00000008318.10 ENSMUSG00000008318 ENSMUST00000142885 Relt protein_coding Interval_91544 chr2 42445845 42446081 + 0 NA intron (ENSMUSG00000049252.17, intron 1 of 2) protein_coding-intron (ENSMUSG00000049252.17, intron 1 of 90) 1605 ENSMUSG00000098660.1 ENSMUSG00000098660 ENSMUST00000183581 Mir6336 miRNA Interval_69169 chr16 91092386 91092592 + 0 NA intron (ENSMUSG00000039851.11, intron 1 of 1) protein_coding-intron (ENSMUSG00000039851.11, intron 1 of 1) 2633 ENSMUSG00000039851.11 ENSMUSG00000039851 ENSMUST00000146047 4932438H23Rik protein_coding Interval_27848 chr11 70387453 70387734 + 0 NA Intergenic Intergenic 22438 ENSMUSG00000018921.11 ENSMUSG00000018921 ENSMUST00000135148 Pelp1 protein_coding Interval_86742 chr19 43524047 43525269 + 0 NA promoter-TSS (ENSMUSG00000025190.13) protein_coding-promoter-TSS (ENSMUSG00000025190.13) -3654 ENSMUSG00000118221.1 ENSMUSG00000118221 ENSMUST00000236043 Gm50194 lincRNA Interval_1977 chr1 35385310 35385839 + 0 NA Intergenic Intergenic -206490 ENSMUSG00000077231.1 ENSMUSG00000077231 ENSMUST00000104043 Gm25096 snoRNA Interval_160563 chr8 110726527 110727690 + 0 NA promoter-TSS (ENSMUSG00000033763.14) protein_coding-promoter-TSS (ENSMUSG00000033763.14) -238 ENSMUSG00000033763.14 ENSMUSG00000033763 ENSMUST00000133848 Mtss2 protein_coding Interval_101600 chr3 7529927 7530191 + 0 NA intron (ENSMUSG00000043542.12, intron 7 of 7) protein_coding-intron (ENSMUSG00000043542.12, intron 7 of 8) 26573 ENSMUSG00000043542.12 ENSMUSG00000043542 ENSMUST00000192835 Zc2hc1a protein_coding Interval_160572 chr8 110782165 110782374 + 0 NA intron (ENSMUSG00000031750.15, intron 1 of 1) protein_coding-intron (ENSMUSG00000031750.15, intron 1 of 6) -23369 ENSMUSG00000085068.1 ENSMUSG00000085068 ENSMUST00000157018 Gm15895 antisense Interval_167835 chr9 72944854 72945716 + 0 NA exon (ENSMUSG00000034910.5, exon 3 of 3) protein_coding-exon (ENSMUSG00000034910.5, exon 3 of 3) -13500 ENSMUSG00000092192.7 ENSMUSG00000092192 ENSMUST00000034734 Dnaaf4 protein_coding Interval_163465 chr9 21568904 21569154 + 0 NA intron (ENSMUSG00000032185.15, intron 1 of 13) protein_coding-intron (ENSMUSG00000032185.15, intron 1 of 15) -18316 ENSMUSG00000032185.15 ENSMUSG00000032185 ENSMUST00000130100 Carm1 protein_coding Interval_2704 chr1 43590581 43590932 + 0 NA Intergenic Intergenic 30483 ENSMUSG00000103945.1 ENSMUSG00000103945 ENSMUST00000193169 Gm38228 TEC Interval_88436 chr2 5043926 5046519 + 0 NA TTS (ENSMUSG00000026672.11) protein_coding-TTS (ENSMUSG00000026672.11) 7942 ENSMUSG00000086430.1 ENSMUSG00000086430 ENSMUST00000145585 4930551O13Rik antisense Interval_140527 chr6 119320413 119320758 + 0 NA exon (ENSMUSG00000055003.14, exon 3 of 4) protein_coding-exon (ENSMUSG00000055003.14, exon 3 of 4) 8619 ENSMUSG00000055003.14 ENSMUSG00000055003 ENSMUST00000124192 Lrtm2 protein_coding Interval_104544 chr3 67568211 67568567 + 0 NA Intergenic Intergenic 4432 ENSMUSG00000104382.1 ENSMUSG00000104382 ENSMUST00000192586 4930402C01Rik lincRNA Interval_21592 chr10 130370881 130371274 + 0 NA Intergenic Intergenic 23255 ENSMUSG00000070601.5 ENSMUSG00000070601 ENSMUST00000233031 Vmn2r84 protein_coding Interval_110020 chr3 152542207 152542421 + 0 NA intron (ENSMUSG00000039058.11, intron 6 of 13) protein_coding-intron (ENSMUSG00000039058.11, intron 6 of 13) -15562 ENSMUSG00000039058.11 ENSMUSG00000039058 ENSMUST00000198552 Ak5 protein_coding Interval_80070 chr18 37294544 37295282 + 0 NA promoter-TSS (ENSMUSG00000051599.4) protein_coding-promoter-TSS (ENSMUSG00000051599.4) 73 ENSMUSG00000051599.4 ENSMUSG00000051599 ENSMUST00000193137 Pcdhb2 protein_coding Interval_25445 chr11 48627663 48628210 + 0 NA Intergenic Intergenic 32657 ENSMUSG00000082250.1 ENSMUSG00000082250 ENSMUST00000121448 Gm12181 processed_pseudogene Interval_65098 chr16 19087852 19088194 + 0 NA intron (ENSMUSG00000106567.1, intron 2 of 3) antisense-intron (ENSMUSG00000106567.1, intron 2 of 3) -2523 ENSMUSG00000076934.2 ENSMUSG00000076934 ENSMUST00000103746 Iglv1 IG_V_gene Interval_145940 chr7 42490907 42491439 + 0 NA intron (ENSMUSG00000092416.2, intron 1 of 4) protein_coding-intron (ENSMUSG00000092416.2, intron 4 of 5) 2372 ENSMUSG00000092505.1 ENSMUSG00000092505 ENSMUST00000173599 Gm19246 processed_pseudogene Interval_19723 chr10 108300759 108301350 + 0 NA Intergenic Intergenic -31763 ENSMUSG00000035873.8 ENSMUSG00000035873 ENSMUST00000218332 Pawr protein_coding Interval_61231 chr15 80115041 80117849 + 0 NA TTS (ENSMUSG00000022415.12) protein_coding-TTS (ENSMUSG00000022415.12) -16682 ENSMUSG00000022414.8 ENSMUSG00000022414 ENSMUST00000229320 Tab1 protein_coding Interval_168533 chr9 83225257 83225532 + 0 NA Intergenic Intergenic 28628 ENSMUSG00000098747.7 ENSMUSG00000098747 ENSMUST00000184080 Gm27216 lincRNA Interval_36536 chr12 48891100 48891622 + 0 NA Intergenic Intergenic 14683 ENSMUSG00000108639.1 ENSMUSG00000108639 ENSMUST00000205588 AC124542.1 unprocessed_pseudogene Interval_29617 chr11 85461579 85462426 + 0 NA intron (ENSMUSG00000059439.15, intron 9 of 26) protein_coding-intron (ENSMUSG00000059439.15, intron 9 of 24) -4157 ENSMUSG00000059439.15 ENSMUSG00000059439 ENSMUST00000140562 Bcas3 protein_coding Interval_3001 chr1 52046738 52047196 + 0 NA intron (ENSMUSG00000062939.11, intron 2 of 4) protein_coding-intron (ENSMUSG00000062939.11, intron 3 of 23) -30294 ENSMUSG00000101628.1 ENSMUSG00000101628 ENSMUST00000185516 Gm28177 processed_transcript Interval_117664 chr4 125430746 125430938 + 0 NA Intergenic Intergenic -59858 ENSMUSG00000001985.9 ENSMUSG00000001985 ENSMUST00000030676 Grik3 protein_coding Interval_139348 chr6 99217385 99218129 + 0 NA intron (ENSMUSG00000030067.17, intron 4 of 4) protein_coding-intron (ENSMUSG00000030067.17, intron 2 of 3) -141700 ENSMUSG00000105902.1 ENSMUSG00000105902 ENSMUST00000200105 Gm49348 miRNA Interval_132151 chr5 142976991 142978024 + 0 NA Intergenic Intergenic 17131 ENSMUSG00000029581.14 ENSMUSG00000029581 ENSMUST00000135293 Fscn1 protein_coding Interval_83376 chr18 84693690 84694739 + 0 NA Intergenic Intergenic -9830 ENSMUSG00000024644.17 ENSMUSG00000024644 ENSMUST00000235149 Cndp2 protein_coding Interval_19086 chr10 94391757 94392044 + 0 NA intron (ENSMUSG00000020023.18, intron 1 of 1) protein_coding-intron (ENSMUSG00000020023.18, intron 1 of 2) -16991 ENSMUSG00000085409.1 ENSMUSG00000085409 ENSMUST00000155180 Gm16155 sense_intronic Interval_146223 chr7 44829221 44829631 + 0 NA TTS (ENSMUSG00000109511.1) protein_coding-TTS (ENSMUSG00000109511.1) -12852 ENSMUSG00000038539.15 ENSMUSG00000038539 ENSMUST00000209072 Atf5 protein_coding Interval_75694 chr17 70722371 70722638 + 0 NA intron (ENSMUSG00000003279.17, intron 5 of 10) protein_coding-intron (ENSMUSG00000003279.17, intron 9 of 14) 33078 ENSMUSG00000097282.1 ENSMUSG00000097282 ENSMUST00000181546 5031415H12Rik antisense Interval_53425 chr14 57346324 57346895 + 0 NA intron (ENSMUSG00000021947.11, intron 3 of 3) protein_coding-intron (ENSMUSG00000021947.11, intron 3 of 7) -13124 ENSMUSG00000077497.1 ENSMUSG00000077497 ENSMUST00000104309 Gm23593 snoRNA Interval_67006 chr16 39316773 39317595 + 0 NA Intergenic Intergenic -128278 ENSMUSG00000116965.1 ENSMUSG00000116965 ENSMUST00000231748 Gm36742 lincRNA Interval_120944 chr4 151849695 151850437 + 0 NA intron (ENSMUSG00000014592.21, intron 1 of 3) protein_coding-intron (ENSMUSG00000014592.21, intron 1 of 23) 11638 ENSMUSG00000014592.21 ENSMUSG00000014592 ENSMUST00000135780 Camta1 protein_coding Interval_157403 chr8 70150206 70151012 + 0 NA intron (ENSMUSG00000079033.10, intron 1 of 8) protein_coding-intron (ENSMUSG00000079033.10, intron 1 of 8) 10886 ENSMUSG00000002345.18 ENSMUSG00000002345 ENSMUST00000110139 Borcs8 protein_coding Interval_24863 chr11 40554831 40555232 + 0 NA Intergenic Intergenic 15494 ENSMUSG00000082390.1 ENSMUSG00000082390 ENSMUST00000120460 Gm12136 processed_pseudogene Interval_78708 chr18 18484030 18484244 + 0 NA Intergenic Intergenic -239980 ENSMUSG00000117574.1 ENSMUSG00000117574 ENSMUST00000234831 Gm50084 lincRNA Interval_14863 chr10 40601080 40601466 + 0 NA intron (ENSMUSG00000019834.15, intron 7 of 7) protein_coding-intron (ENSMUSG00000019834.15, intron 7 of 7) -28804 ENSMUSG00000063428.8 ENSMUSG00000063428 ENSMUST00000214618 Ddo protein_coding Interval_7673 chr1 132968375 132969093 + 0 NA intron (ENSMUSG00000054387.13, intron 2 of 2) protein_coding-intron (ENSMUSG00000054387.13, intron 10 of 10) -23414 ENSMUSG00000102709.1 ENSMUSG00000102709 ENSMUST00000194934 Gm38308 TEC Interval_10534 chr1 171558487 171559128 + 0 NA promoter-TSS (ENSMUSG00000004709.14) protein_coding-promoter-TSS (ENSMUSG00000004709.14) 17115 ENSMUSG00000103980.1 ENSMUSG00000103980 ENSMUST00000195218 Gm37450 processed_pseudogene Interval_44120 chr13 41015704 41016950 + 0 NA promoter-TSS (ENSMUSG00000021361.7) protein_coding-promoter-TSS (ENSMUSG00000021361.7) 35 ENSMUSG00000021361.7 ENSMUSG00000021361 ENSMUST00000021790 Tmem14c protein_coding Interval_169074 chr9 91503807 91504616 + 0 NA intron (ENSMUSG00000100341.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000100341.1, intron 1 of 2) 99737 ENSMUSG00000100341.1 ENSMUSG00000100341 ENSMUST00000191272 Gm29478 lincRNA Interval_42829 chr13 20108926 20109605 + 0 NA intron (ENSMUSG00000041112.17, intron 1 of 6) protein_coding-intron (ENSMUSG00000041112.17, intron 1 of 21) -113461 ENSMUSG00000050243.6 ENSMUSG00000050243 ENSMUST00000091762 Gm5446 processed_pseudogene Interval_172973 chrX 58155118 58155943 + 0 NA Intergenic Intergenic 28956 ENSMUSG00000081837.1 ENSMUSG00000081837 ENSMUST00000121814 Gm14649 processed_pseudogene Interval_99656 chr2 163994524 163995772 + 0 NA promoter-TSS (ENSMUSG00000018326.9) protein_coding-promoter-TSS (ENSMUSG00000018326.9) -355 ENSMUSG00000018326.9 ENSMUSG00000018326 ENSMUST00000131288 Ywhab protein_coding Interval_131439 chr5 137193803 137194074 + 0 NA Intergenic Intergenic -4771 ENSMUSG00000106190.1 ENSMUSG00000106190 ENSMUST00000199527 Gm20768 processed_pseudogene Interval_141763 chr6 134297913 134298342 + 0 NA Intergenic Intergenic -51761 ENSMUSG00000108263.1 ENSMUSG00000108263 ENSMUST00000204426 1700051K13Rik TEC Interval_137839 chr6 82861767 82863725 + 0 NA Intergenic Intergenic 19086 ENSMUSG00000100291.6 ENSMUSG00000100291 ENSMUST00000191170 2310069B03Rik lincRNA Interval_119662 chr4 139074210 139076174 + 0 NA promoter-TSS (ENSMUSG00000028747.10) protein_coding-promoter-TSS (ENSMUSG00000028747.10) 378 ENSMUSG00000028747.10 ENSMUSG00000028747 ENSMUST00000068036 Htr6 protein_coding Interval_39774 chr12 98139640 98140618 + 0 NA Intergenic Intergenic -31562 ENSMUSG00000112812.1 ENSMUSG00000112812 ENSMUST00000220264 Gm47415 lincRNA Interval_78076 chr18 7685848 7687167 + 0 NA intron (ENSMUSG00000117542.1, intron 1 of 1) processed_pseudogene-intron (ENSMUSG00000117542.1, intron 1 of 1) 6219 ENSMUSG00000117542.1 ENSMUSG00000117542 ENSMUST00000234387 Gm18763 processed_pseudogene Interval_150664 chr7 113177661 113178084 + 0 NA Intergenic Intergenic -35857 ENSMUSG00000110009.1 ENSMUSG00000110009 ENSMUST00000210408 4930543E12Rik lincRNA Interval_127133 chr5 100499853 100501161 + 0 NA promoter-TSS (ENSMUSG00000035310.15) protein_coding-promoter-TSS (ENSMUSG00000035310.15) -289 ENSMUSG00000088742.1 ENSMUSG00000088742 ENSMUST00000158117 Gm23222 miRNA Interval_36632 chr12 51663985 51665699 + 0 NA intron (ENSMUSG00000020954.16, intron 1 of 15) protein_coding-intron (ENSMUSG00000020954.16, intron 1 of 17) -21044 ENSMUSG00000020954.16 ENSMUSG00000020954 ENSMUST00000218212 Strn3 protein_coding Interval_134497 chr6 29143000 29143858 + 0 NA intron (ENSMUSG00000029701.15, intron 2 of 4) protein_coding-intron (ENSMUSG00000029701.15, intron 10 of 18) 7250 ENSMUSG00000095596.1 ENSMUSG00000095596 ENSMUST00000178237 Gm24303 miRNA Interval_47983 chr13 94857447 94858654 + 0 NA Intergenic Intergenic -24550 ENSMUSG00000021685.11 ENSMUSG00000021685 ENSMUST00000184985 Otp protein_coding Interval_45303 chr13 54180081 54180453 + 0 NA Intergenic Intergenic -33740 ENSMUSG00000034987.4 ENSMUSG00000034987 ENSMUST00000211742 Hrh2 protein_coding Interval_139905 chr6 112603669 112604484 + 0 NA Intergenic Intergenic -1468 ENSMUSG00000029633.9 ENSMUSG00000029633 ENSMUST00000121490 Gm5578 processed_pseudogene Interval_173966 chrX 118050189 118051176 + 0 NA Intergenic Intergenic 70690 ENSMUSG00000081268.1 ENSMUSG00000081268 ENSMUST00000117853 Gm14909 processed_pseudogene Interval_135051 chr6 34980670 34981615 + 0 NA intron (ENSMUSG00000029847.13, intron 1 of 11) protein_coding-intron (ENSMUSG00000029847.13, intron 1 of 11) 7262 ENSMUSG00000029847.13 ENSMUSG00000029847 ENSMUST00000144079 Slc23a4 protein_coding Interval_108922 chr3 133359804 133360606 + 0 NA intron (ENSMUSG00000028013.16, intron 7 of 8) protein_coding-intron (ENSMUSG00000028013.16, intron 7 of 11) 38737 ENSMUSG00000028013.16 ENSMUSG00000028013 ENSMUST00000196807 Ppa2 protein_coding Interval_137915 chr6 83335816 83336657 + 0 NA intron (ENSMUSG00000043131.14, intron 4 of 6) protein_coding-intron (ENSMUSG00000043131.14, intron 2 of 3) 9876 ENSMUSG00000043131.14 ENSMUSG00000043131 ENSMUST00000155580 Mob1a protein_coding Interval_48485 chr13 99373537 99373884 + 0 NA intron (ENSMUSG00000041632.7, intron 4 of 5) protein_coding-intron (ENSMUSG00000041632.7, intron 4 of 10) 28166 ENSMUSG00000041632.7 ENSMUSG00000041632 ENSMUST00000225973 Mrps27 protein_coding Interval_9036 chr1 153215755 153217776 + 0 NA Intergenic Intergenic 22561 ENSMUSG00000026478.14 ENSMUSG00000026478 ENSMUST00000159251 Lamc1 protein_coding Interval_127696 chr5 106773178 106774311 + 0 NA Intergenic Intergenic -34980 ENSMUSG00000106301.1 ENSMUSG00000106301 ENSMUST00000197334 Gm8365 processed_pseudogene Interval_22701 chr11 13379073 13379794 + 0 NA Intergenic Intergenic 381767 ENSMUSG00000084055.1 ENSMUSG00000084055 ENSMUST00000117869 Gm12004 processed_pseudogene Interval_66993 chr16 39114375 39114628 + 0 NA Intergenic Intergenic 74405 ENSMUSG00000116965.1 ENSMUSG00000116965 ENSMUST00000231748 Gm36742 lincRNA Interval_104891 chr3 78563398 78563637 + 0 NA Intergenic Intergenic -74880 ENSMUSG00000084370.3 ENSMUSG00000084370 ENSMUST00000117905 Gm15442 processed_pseudogene Interval_40841 chr12 108785818 108786178 + 0 NA Intergenic Intergenic 6745 ENSMUSG00000114045.1 ENSMUSG00000114045 ENSMUST00000223001 Gm34220 TEC Interval_138530 chr6 88944439 88945419 + 0 NA Intergenic Intergenic -5754 ENSMUSG00000055403.13 ENSMUSG00000055403 ENSMUST00000153981 4933427D06Rik lincRNA Interval_73285 chr17 35969293 35970324 + 0 NA promoter-TSS (ENSMUSG00000038762.15) protein_coding-promoter-TSS (ENSMUSG00000038762.15) -5536 ENSMUSG00000038762.15 ENSMUSG00000038762 ENSMUST00000172661 Abcf1 protein_coding Interval_156080 chr8 43662614 43662954 + 0 NA intron (ENSMUSG00000079058.3, intron 1 of 1) protein_coding-intron (ENSMUSG00000079058.3, intron 3 of 3) 13263 ENSMUSG00000109723.1 ENSMUSG00000109723 ENSMUST00000210542 Gm5347 processed_pseudogene Interval_124196 chr5 39922864 39923375 + 0 NA Intergenic Intergenic 62509 ENSMUSG00000107070.1 ENSMUSG00000107070 ENSMUST00000200925 Gm35191 lincRNA Interval_129822 chr5 122548725 122548966 + 0 NA Intergenic Intergenic 19259 ENSMUSG00000105815.1 ENSMUSG00000105815 ENSMUST00000197208 Gm43541 TEC Interval_156352 chr8 47627280 47627611 + 0 NA TTS (ENSMUSG00000109960.1) processed_pseudogene-TTS (ENSMUSG00000109960.1) 655 ENSMUSG00000109960.1 ENSMUSG00000109960 ENSMUST00000210283 Gm45575 processed_pseudogene Interval_24944 chr11 41820934 41821150 + 0 NA intron (ENSMUSG00000087306.7, intron 3 of 8) processed_transcript-intron (ENSMUSG00000087306.7, intron 3 of 8) -31223 ENSMUSG00000084293.1 ENSMUSG00000084293 ENSMUST00000119666 Gm12143 processed_pseudogene Interval_70087 chr17 5217146 5218400 + 0 NA intron (ENSMUSG00000069729.14, intron 4 of 19) protein_coding-intron (ENSMUSG00000069729.14, intron 4 of 18) -105663 ENSMUSG00000081783.2 ENSMUSG00000081783 ENSMUST00000122283 Gm15599 processed_pseudogene Interval_124650 chr5 52833314 52834640 + 0 NA promoter-TSS (ENSMUSG00000029176.13) protein_coding-promoter-TSS (ENSMUSG00000029176.13) -21370 ENSMUSG00000029176.13 ENSMUSG00000029176 ENSMUST00000138629 Anapc4 protein_coding Interval_40701 chr12 107595086 107595338 + 0 NA Intergenic Intergenic -17788 ENSMUSG00000079359.2 ENSMUSG00000079359 ENSMUST00000165520 Gm9006 processed_pseudogene Interval_82439 chr18 74003800 74004873 + 0 NA intron (ENSMUSG00000024558.12, intron 1 of 1) protein_coding-intron (ENSMUSG00000024558.12, intron 1 of 5) -13571 ENSMUSG00000090263.1 ENSMUSG00000090263 ENSMUST00000159260 D730045A05Rik lincRNA Interval_16105 chr10 60760155 60760942 + 0 NA Intergenic Intergenic -7765 ENSMUSG00000020100.15 ENSMUSG00000020100 ENSMUST00000144989 Slc29a3 protein_coding Interval_143117 chr6 149466433 149466723 + 0 NA intron (ENSMUSG00000003452.15, intron 1 of 9) protein_coding-intron (ENSMUSG00000003452.15, intron 1 of 9) -32105 ENSMUSG00000082072.1 ENSMUSG00000082072 ENSMUST00000119145 Gm15785 processed_pseudogene Interval_147313 chr7 65767023 65767361 + 0 NA Intergenic Intergenic -17667 ENSMUSG00000068480.6 ENSMUSG00000068480 ENSMUST00000089593 Gm7551 processed_pseudogene Interval_139405 chr6 99891630 99892063 + 0 NA intron (ENSMUSG00000107204.1, intron 2 of 3) lincRNA-intron (ENSMUSG00000107204.1, intron 2 of 3) 1701 ENSMUSG00000087946.1 ENSMUSG00000087946 ENSMUST00000157321 Gm24248 misc_RNA Interval_32623 chr11 109233767 109234303 + 0 NA intron (ENSMUSG00000020599.13, intron 8 of 9) protein_coding-intron (ENSMUSG00000020599.13, intron 17 of 18) 12930 ENSMUSG00000020599.13 ENSMUSG00000020599 ENSMUST00000106704 Rgs9 protein_coding Interval_160966 chr8 116491502 116491813 + 0 NA TTS (ENSMUSG00000110700.1) processed_pseudogene-TTS (ENSMUSG00000110700.1) 2471 ENSMUSG00000110700.1 ENSMUSG00000110700 ENSMUST00000212720 Gm5357 processed_pseudogene Interval_145982 chr7 42844428 42844706 + 0 NA intron (ENSMUSG00000092225.1, intron 1 of 3) protein_coding-intron (ENSMUSG00000092225.1, intron 1 of 3) 22667 ENSMUSG00000092225.1 ENSMUSG00000092225 ENSMUST00000174558 Gm2381 protein_coding Interval_29779 chr11 86740350 86740577 + 0 NA intron (ENSMUSG00000047126.17, intron 1 of 31) protein_coding-intron (ENSMUSG00000047126.17, intron 1 of 31) -13980 ENSMUSG00000047126.17 ENSMUSG00000047126 ENSMUST00000133501 Cltc protein_coding Interval_7584 chr1 132333696 132336001 + 0 NA Intergenic Intergenic -7175 ENSMUSG00000100658.1 ENSMUSG00000100658 ENSMUST00000189288 F730311O21Rik lincRNA Interval_85492 chr19 27469412 27470252 + 0 NA Intergenic Intergenic -42676 ENSMUSG00000118072.1 ENSMUSG00000118072 ENSMUST00000235994 Gm50101 processed_pseudogene Interval_141925 chr6 135404973 135405204 + 0 NA Intergenic Intergenic 42543 ENSMUSG00000030208.15 ENSMUSG00000030208 ENSMUST00000111907 Emp1 protein_coding Interval_85346 chr19 25040683 25041455 + 0 NA intron (ENSMUSG00000052085.7, intron 1 of 3) protein_coding-intron (ENSMUSG00000052085.7, intron 1 of 47) -11544 ENSMUSG00000052085.7 ENSMUSG00000052085 ENSMUST00000236576 Dock8 protein_coding Interval_33033 chr11 113785050 113786255 + 0 NA intron (ENSMUSG00000041592.16, intron 44 of 44) protein_coding-intron (ENSMUSG00000041592.16, intron 44 of 44) 24771 ENSMUSG00000041592.16 ENSMUSG00000041592 ENSMUST00000144301 Sdk2 protein_coding Interval_24646 chr11 35616432 35617131 + 0 NA promoter-TSS (ENSMUSG00000065583.1) miRNA-promoter-TSS (ENSMUSG00000065583.1) -35 ENSMUSG00000065583.1 ENSMUSG00000065583 ENSMUST00000083649 Mir218-2 miRNA Interval_134000 chr6 17629183 17630532 + 0 NA Intergenic Intergenic -7178 ENSMUSG00000015733.13 ENSMUSG00000015733 ENSMUST00000142592 Capza2 protein_coding Interval_83243 chr18 82955647 82957542 + 0 NA TTS (ENSMUSG00000058881.13) protein_coding-TTS (ENSMUSG00000058881.13) -36034 ENSMUSG00000118339.1 ENSMUSG00000118339 ENSMUST00000237056 4930592I03Rik processed_transcript Interval_112091 chr4 34634460 34634696 + 0 NA intron (ENSMUSG00000028292.14, intron 6 of 19) protein_coding-intron (ENSMUSG00000028292.14, intron 6 of 19) 19600 ENSMUSG00000028292.14 ENSMUSG00000028292 ENSMUST00000141519 Rars2 protein_coding Interval_22534 chr11 11561418 11561717 + 0 NA intron (ENSMUSG00000087452.1, intron 1 of 2) antisense-intron (ENSMUSG00000087452.1, intron 1 of 2) 4146 ENSMUSG00000087452.1 ENSMUSG00000087452 ENSMUST00000146304 Gm11998 antisense Interval_126267 chr5 85611364 85611660 + 0 NA Intergenic Intergenic -109262 ENSMUSG00000104878.1 ENSMUSG00000104878 ENSMUST00000197581 Gm43567 lincRNA Interval_28318 chr11 75170215 75170742 + 0 NA promoter-TSS (ENSMUSG00000043099.4) protein_coding-promoter-TSS (ENSMUSG00000043099.4) -2082 ENSMUSG00000085609.1 ENSMUSG00000085609 ENSMUST00000134252 1700016P03Rik processed_transcript Interval_149183 chr7 96089373 96090144 + 0 NA Intergenic Intergenic 113778 ENSMUSG00000108528.1 ENSMUSG00000108528 ENSMUST00000205708 Gm8319 processed_pseudogene Interval_47694 chr13 91376645 91377029 + 0 NA intron (ENSMUSG00000097182.2, intron 1 of 2) lincRNA-intron (ENSMUSG00000097182.2, intron 1 of 2) -2543 ENSMUSG00000099340.1 ENSMUSG00000099340 ENSMUST00000188207 Gm29540 sense_intronic Interval_14141 chr10 28028723 28029217 + 0 NA Intergenic Intergenic 37220 ENSMUSG00000112432.1 ENSMUSG00000112432 ENSMUST00000218855 Gm18507 processed_pseudogene Interval_116462 chr4 113206035 113206723 + 0 NA intron (ENSMUSG00000087194.9, intron 3 of 47) protein_coding-intron (ENSMUSG00000087194.9, intron 4 of 48) 77263 ENSMUSG00000087194.9 ENSMUSG00000087194 ENSMUST00000171224 Skint6 protein_coding Interval_20761 chr10 120821890 120822366 + 0 NA intron (ENSMUSG00000051236.13, intron 3 of 5) protein_coding-intron (ENSMUSG00000051236.13, intron 5 of 6) 21451 ENSMUSG00000086444.2 ENSMUSG00000086444 ENSMUST00000156090 Gm15961 antisense Interval_12258 chr1 191182412 191185168 + 0 NA promoter-TSS (ENSMUSG00000026628.13) protein_coding-promoter-TSS (ENSMUSG00000026628.13) -13116 ENSMUSG00000088461.1 ENSMUSG00000088461 ENSMUST00000157836 Gm24748 misc_RNA Interval_70329 chr17 8527037 8527224 + 0 NA intron (ENSMUSG00000023868.17, intron 1 of 3) protein_coding-intron (ENSMUSG00000023868.17, intron 1 of 21) 39820 ENSMUSG00000099104.1 ENSMUSG00000099104 ENSMUST00000184183 Gm17087 protein_coding Interval_141977 chr6 136293426 136293951 + 0 NA Intergenic Intergenic 12461 ENSMUSG00000087878.1 ENSMUSG00000087878 ENSMUST00000157253 Gm26105 snRNA Interval_126816 chr5 93151323 93151588 + 0 NA intron (ENSMUSG00000058013.11, intron 3 of 9) protein_coding-intron (ENSMUSG00000058013.11, intron 3 of 9) -25515 ENSMUSG00000107019.1 ENSMUSG00000107019 ENSMUST00000202150 Gm43682 TEC Interval_122710 chr5 24821348 24822013 + 0 NA promoter-TSS (ENSMUSG00000089475.1) misc_RNA-promoter-TSS (ENSMUSG00000089475.1) -843 ENSMUSG00000089475.1 ENSMUSG00000089475 ENSMUST00000158850 Gm25363 misc_RNA Interval_138527 chr6 88925546 88926310 + 0 NA Intergenic Intergenic 6220 ENSMUSG00000107676.1 ENSMUSG00000107676 ENSMUST00000205229 Gm44178 TEC Interval_14626 chr10 37212093 37212949 + 0 NA Intergenic Intergenic 51227 ENSMUSG00000110799.1 ENSMUSG00000110799 ENSMUST00000217044 4930543K20Rik lincRNA Interval_113619 chr4 57038707 57041832 + 0 NA intron (ENSMUSG00000028434.12, intron 16 of 25) protein_coding-intron (ENSMUSG00000028434.12, intron 16 of 25) 30290 ENSMUSG00000028434.12 ENSMUSG00000028434 ENSMUST00000133859 Epb41l4b protein_coding Interval_127768 chr5 107597251 107598264 + 0 NA promoter-TSS (ENSMUSG00000033773.14) protein_coding-promoter-TSS (ENSMUSG00000033773.14) -191 ENSMUSG00000029276.13 ENSMUSG00000029276 ENSMUST00000124140 Glmn protein_coding Interval_137401 chr6 71931287 71931966 + 0 NA exon (ENSMUSG00000049553.11, exon 12 of 34) protein_coding-exon (ENSMUSG00000049553.11, exon 12 of 34) -11782 ENSMUSG00000108305.1 ENSMUSG00000108305 ENSMUST00000206311 Gm19078 processed_pseudogene Interval_56528 chr14 120059453 120059995 + 0 NA Intergenic Intergenic -17289 ENSMUSG00000044819.5 ENSMUSG00000044819 ENSMUST00000058213 Oxgr1 protein_coding Interval_77151 chr17 86926844 86927062 + 0 NA Intergenic Intergenic -2020 ENSMUSG00000117457.1 ENSMUSG00000117457 ENSMUST00000234807 Gm50011 lincRNA Interval_174423 chrX 152147555 152147857 + 0 NA intron (ENSMUSG00000041115.16, intron 1 of 14) protein_coding-intron (ENSMUSG00000041115.16, intron 1 of 13) 3438 ENSMUSG00000041115.16 ENSMUSG00000041115 ENSMUST00000096275 Iqsec2 protein_coding Interval_162717 chr9 7983389 7984055 + 0 NA intron (ENSMUSG00000053110.13, intron 1 of 7) protein_coding-intron (ENSMUSG00000053110.13, intron 2 of 8) 17884 ENSMUSG00000092185.1 ENSMUSG00000092185 ENSMUST00000174760 Gm20416 processed_transcript Interval_5404 chr1 88550559 88551133 + 0 NA promoter-TSS (ENSMUSG00000100798.1) lincRNA-promoter-TSS (ENSMUSG00000100798.1) -671 ENSMUSG00000100798.1 ENSMUSG00000100798 ENSMUST00000189394 Gm19589 lincRNA Interval_100849 chr2 172870745 172873019 + 0 NA intron (ENSMUSG00000008999.7, intron 6 of 6) protein_coding-intron (ENSMUSG00000008999.7, intron 6 of 6) -7541 ENSMUSG00000093160.1 ENSMUSG00000093160 ENSMUST00000175419 Gm22773 miRNA Interval_163838 chr9 27050489 27051000 + 0 NA intron (ENSMUSG00000035024.16, intron 8 of 8) protein_coding-intron (ENSMUSG00000035024.16, intron 10 of 35) 20565 ENSMUSG00000035024.16 ENSMUSG00000035024 ENSMUST00000214270 Ncapd3 protein_coding Interval_38260 chr12 76765157 76766417 + 0 NA intron (ENSMUSG00000090258.7, intron 1 of 2) protein_coding-intron (ENSMUSG00000090258.7, intron 1 of 3) -2701 ENSMUSG00000090258.7 ENSMUSG00000090258 ENSMUST00000152917 Churc1 protein_coding Interval_25813 chr11 51880485 51882064 + 0 NA Intergenic Intergenic -17692 ENSMUSG00000110618.1 ENSMUSG00000110618 ENSMUST00000212253 Gm39822 lincRNA Interval_61915 chr15 85210721 85211809 + 0 NA intron (ENSMUSG00000006369.14, intron 1 of 14) protein_coding-intron (ENSMUSG00000006369.14, intron 1 of 16) -52189 ENSMUSG00000006369.14 ENSMUSG00000006369 ENSMUST00000160798 Fbln1 protein_coding Interval_125391 chr5 66638473 66638767 + 0 NA intron (ENSMUSG00000087601.3, intron 1 of 4) antisense-intron (ENSMUSG00000087601.3, intron 1 of 4) 37413 ENSMUSG00000087601.3 ENSMUSG00000087601 ENSMUST00000177319 Uchl1os antisense Interval_118037 chr4 128552231 128553320 + 0 NA TTS (ENSMUSG00000028804.20) protein_coding-TTS (ENSMUSG00000028804.20) 200 ENSMUSG00000028804.20 ENSMUSG00000028804 ENSMUST00000221199 Csmd2 protein_coding Interval_88669 chr2 9462224 9462610 + 0 NA Intergenic Intergenic 109897 ENSMUSG00000079604.9 ENSMUSG00000079604 ENSMUST00000154223 Gm13219 lincRNA Interval_100803 chr2 172607581 172608252 + 0 NA Intergenic Intergenic 56925 ENSMUSG00000028640.11 ENSMUSG00000028640 ENSMUST00000142633 Tfap2c protein_coding Interval_54954 chr14 76460678 76461842 + 0 NA intron (ENSMUSG00000022010.19, intron 3 of 4) protein_coding-intron (ENSMUSG00000022010.19, intron 1 of 2) 42432 ENSMUSG00000022010.19 ENSMUSG00000022010 ENSMUST00000133224 Tsc22d1 protein_coding Interval_25048 chr11 43502940 43503282 + 0 NA Intergenic Intergenic -26135 ENSMUSG00000044707.7 ENSMUSG00000044707 ENSMUST00000152153 Ccnjl protein_coding Interval_144837 chr7 28544622 28545292 + 0 NA intron (ENSMUSG00000047586.4, intron 4 of 5) protein_coding-intron (ENSMUSG00000109336.1, intron 1 of 12) 2297 ENSMUSG00000047586.4 ENSMUSG00000047586 ENSMUST00000057974 Nccrp1 protein_coding Interval_108768 chr3 131155945 131156887 + 0 NA intron (ENSMUSG00000027985.14, intron 2 of 2) protein_coding-intron (ENSMUSG00000027985.14, intron 3 of 11) 19631 ENSMUSG00000104612.1 ENSMUSG00000104612 ENSMUST00000200349 Gm42449 TEC Interval_155617 chr8 35205341 35206194 + 0 NA Intergenic Intergenic -12871 ENSMUSG00000109773.1 ENSMUSG00000109773 ENSMUST00000209645 Gm34474 lincRNA Interval_106193 chr3 94487771 94488105 + 0 NA TTS (ENSMUSG00000028137.9) protein_coding-TTS (ENSMUSG00000028137.9) 9444 ENSMUSG00000028137.9 ENSMUSG00000028137 ENSMUST00000197033 Celf3 protein_coding Interval_26393 chr11 57592730 57593722 + 0 NA Intergenic Intergenic 20714 ENSMUSG00000086028.1 ENSMUSG00000086028 ENSMUST00000128521 Gm12243 lincRNA Interval_174860 chrY 1226593 1227091 + 0 NA intron (ENSMUSG00000068457.14, intron 3 of 27) protein_coding-intron (ENSMUSG00000068457.14, intron 3 of 26) 42043 ENSMUSG00000101059.1 ENSMUSG00000101059 ENSMUST00000084813 Gm4017 processed_pseudogene Interval_64344 chr16 10639281 10640494 + 0 NA intron (ENSMUSG00000068663.14, intron 17 of 21) protein_coding-intron (ENSMUSG00000068663.14, intron 17 of 20) 43652 ENSMUSG00000087384.1 ENSMUSG00000087384 ENSMUST00000126849 Gm15558 antisense Interval_36050 chr12 33956974 33959018 + 0 NA exon (ENSMUSG00000035799.6, exon 1 of 2) protein_coding-exon (ENSMUSG00000035799.6, exon 1 of 2) 325 ENSMUSG00000035799.6 ENSMUSG00000035799 ENSMUST00000049089 Twist1 protein_coding Interval_41914 chr13 4307843 4308510 + 0 NA Intergenic Intergenic -28743 ENSMUSG00000021211.4 ENSMUSG00000021211 ENSMUST00000021632 Akr1c12 protein_coding Interval_70775 chr17 14382174 14383078 + 0 NA intron (ENSMUSG00000023886.10, intron 9 of 12) protein_coding-intron (ENSMUSG00000023886.10, intron 9 of 12) 16316 ENSMUSG00000117328.1 ENSMUSG00000117328 ENSMUST00000233310 4930474M22Rik antisense Interval_2449 chr1 39440243 39440430 + 0 NA intron (ENSMUSG00000003134.10, intron 1 of 18) protein_coding-intron (ENSMUSG00000003134.10, intron 1 of 19) -20404 ENSMUSG00000102607.1 ENSMUSG00000102607 ENSMUST00000191698 Gm37265 TEC Interval_134997 chr6 34418956 34420041 + 0 NA TTS (ENSMUSG00000084965.1) transcribed_processed_pseudogene-TTS (ENSMUSG00000084965.1) 7164 ENSMUSG00000052131.7 ENSMUSG00000052131 ENSMUST00000007449 Akr1b7 protein_coding Interval_163056 chr9 14866767 14867278 + 0 NA intron (ENSMUSG00000031932.14, intron 1 of 1) protein_coding-intron (ENSMUSG00000031932.14, intron 3 of 3) 1682 ENSMUSG00000031932.14 ENSMUSG00000031932 ENSMUST00000133278 Gpr83 protein_coding Interval_39557 chr12 90593732 90594197 + 0 NA Intergenic Intergenic -5319 ENSMUSG00000114032.1 ENSMUSG00000114032 ENSMUST00000222569 Gm2139 processed_pseudogene Interval_140806 chr6 121501239 121501454 + 0 NA Intergenic Intergenic -27681 ENSMUSG00000040797.16 ENSMUSG00000040797 ENSMUST00000151397 Iqsec3 protein_coding Interval_58928 chr15 40121849 40122121 + 0 NA intron (ENSMUSG00000115142.1, intron 2 of 2) lincRNA-intron (ENSMUSG00000115142.1, intron 2 of 2) -12380 ENSMUSG00000094112.2 ENSMUSG00000094112 ENSMUST00000179120 9330182O14Rik protein_coding Interval_66350 chr16 33321020 33322006 + 0 NA Intergenic Intergenic 59162 ENSMUSG00000097318.2 ENSMUSG00000097318 ENSMUST00000180923 1700007L15Rik bidirectional_promoter_lncRNA Interval_17592 chr10 78042924 78043961 + 0 NA exon (ENSMUSG00000000731.15, exon 1 of 14) protein_coding-exon (ENSMUSG00000000731.15, exon 1 of 14) 138 ENSMUSG00000000731.15 ENSMUSG00000000731 ENSMUST00000141255 Aire protein_coding Interval_45607 chr13 56215653 56216719 + 0 NA Intergenic Intergenic -13249 ENSMUSG00000114341.1 ENSMUSG00000114341 ENSMUST00000225940 Gm47104 processed_pseudogene Interval_109665 chr3 145863438 145863707 + 0 NA intron (ENSMUSG00000028194.15, intron 4 of 4) protein_coding-intron (ENSMUSG00000028194.15, intron 4 of 5) -15448 ENSMUSG00000105388.1 ENSMUSG00000105388 ENSMUST00000197973 Rpl36a-ps2 processed_pseudogene Interval_107655 chr3 109502493 109503583 + 0 NA intron (ENSMUSG00000033721.16, intron 3 of 3) protein_coding-intron (ENSMUSG00000033721.16, intron 5 of 26) -144486 ENSMUSG00000033721.16 ENSMUSG00000033721 ENSMUST00000148866 Vav3 protein_coding Interval_81968 chr18 66489483 66490828 + 0 NA Intergenic Intergenic 1716 ENSMUSG00000117884.1 ENSMUSG00000117884 ENSMUST00000235885 Gm50156 processed_pseudogene Interval_101100 chr2 177949810 177951193 + 0 NA intron (ENSMUSG00000078862.10, intron 1 of 3) protein_coding-intron (ENSMUSG00000078862.10, intron 2 of 3) 3183 ENSMUSG00000078862.10 ENSMUSG00000078862 ENSMUST00000108928 Gm14326 protein_coding Interval_134015 chr6 17718992 17719333 + 0 NA exon (ENSMUSG00000106822.1, exon 1 of 1) TEC-exon (ENSMUSG00000106822.1, exon 1 of 1) 1584 ENSMUSG00000106822.1 ENSMUSG00000106822 ENSMUST00000202933 Gm43533 TEC Interval_68961 chr16 89715602 89716365 + 0 NA Intergenic Intergenic 79299 ENSMUSG00000002489.16 ENSMUSG00000002489 ENSMUST00000136760 Tiam1 protein_coding Interval_116850 chr4 117676763 117677346 + 0 NA intron (ENSMUSG00000009640.11, intron 4 of 9) protein_coding-intron (ENSMUSG00000009640.11, intron 4 of 10) 5199 ENSMUSG00000009640.11 ENSMUSG00000009640 ENSMUST00000127750 Dmap1 protein_coding Interval_101070 chr2 174905809 174906613 + 0 NA Intergenic Intergenic 49922 ENSMUSG00000086177.1 ENSMUSG00000086177 ENSMUST00000131690 Gm14616 lincRNA Interval_10539 chr1 171609859 171611044 + 0 NA TTS (ENSMUSG00000004709.14) protein_coding-TTS (ENSMUSG00000004709.14) -3091 ENSMUSG00000004707.14 ENSMUSG00000004707 ENSMUST00000146596 Ly9 protein_coding Interval_117438 chr4 123676720 123677472 + 0 NA intron (ENSMUSG00000028649.21, intron 1 of 97) protein_coding-intron (ENSMUSG00000028649.21, intron 1 of 92) 11215 ENSMUSG00000087307.1 ENSMUSG00000087307 ENSMUST00000138861 Gm12925 antisense Interval_45138 chr13 52610458 52610811 + 0 NA intron (ENSMUSG00000021457.14, intron 1 of 5) protein_coding-intron (ENSMUSG00000021457.14, intron 1 of 13) 27131 ENSMUSG00000021457.14 ENSMUSG00000021457 ENSMUST00000140339 Syk protein_coding Interval_10881 chr1 176603569 176603873 + 0 NA Intergenic Intergenic 38837 ENSMUSG00000103471.1 ENSMUSG00000103471 ENSMUST00000193453 Gm17966 processed_pseudogene Interval_135192 chr6 37409294 37409647 + 0 NA intron (ENSMUSG00000038648.5, intron 1 of 11) protein_coding-intron (ENSMUSG00000038648.5, intron 1 of 11) -72935 ENSMUSG00000038648.5 ENSMUSG00000038648 ENSMUST00000128534 Creb3l2 protein_coding Interval_78508 chr18 13843929 13847194 + 0 NA promoter-TSS (ENSMUSG00000024420.9) protein_coding-promoter-TSS (ENSMUSG00000024420.9) 30765 ENSMUSG00000024420.9 ENSMUSG00000024420 ENSMUST00000234025 Zfp521 protein_coding Interval_82481 chr18 74368799 74369086 + 0 NA Intergenic Intergenic 19956 ENSMUSG00000035394.11 ENSMUSG00000035394 ENSMUST00000177407 Cfap53 protein_coding Interval_150353 chr7 109851949 109853275 + 0 NA intron (ENSMUSG00000007279.14, intron 3 of 21) protein_coding-intron (ENSMUSG00000007279.14, intron 3 of 21) -44381 ENSMUSG00000007279.14 ENSMUSG00000007279 ENSMUST00000138946 Scube2 protein_coding Interval_29972 chr11 88461603 88462324 + 0 NA intron (ENSMUSG00000069769.13, intron 2 of 5) protein_coding-intron (ENSMUSG00000069769.13, intron 7 of 13) -28449 ENSMUSG00000084411.2 ENSMUSG00000084411 ENSMUST00000120278 Gm11510 processed_pseudogene Interval_104970 chr3 79417048 79417540 + 0 NA intron (ENSMUSG00000091685.6, intron 2 of 3) protein_coding-intron (ENSMUSG00000091685.6, intron 2 of 4) 71915 ENSMUSG00000091685.6 ENSMUSG00000091685 ENSMUST00000199658 Gm17359 protein_coding Interval_22060 chr11 6064302 6066230 + 0 NA intron (ENSMUSG00000057897.14, intron 1 of 5) protein_coding-intron (ENSMUSG00000057897.14, intron 1 of 18) -81128 ENSMUSG00000057897.14 ENSMUSG00000057897 ENSMUST00000129098 Camk2b protein_coding Interval_2073 chr1 36252865 36253211 + 0 NA Intergenic Intergenic -8318 ENSMUSG00000037470.14 ENSMUSG00000037470 ENSMUST00000192159 Uggt1 protein_coding Interval_45023 chr13 51568846 51569794 + 0 NA promoter-TSS (ENSMUSG00000021448.8) protein_coding-promoter-TSS (ENSMUSG00000021448.8) 167 ENSMUSG00000021448.8 ENSMUSG00000021448 ENSMUST00000221850 Shc3 protein_coding Interval_83391 chr18 84827219 84827472 + 0 NA intron (ENSMUSG00000117781.1, intron 3 of 10) protein_coding-intron (ENSMUSG00000117781.1, intron 3 of 10) 5343 ENSMUSG00000088070.1 ENSMUSG00000088070 ENSMUST00000157445 Gm22819 misc_RNA Interval_114553 chr4 82454526 82455314 + 0 NA intron (ENSMUSG00000008575.17, intron 2 of 4) protein_coding-intron (ENSMUSG00000008575.17, intron 2 of 11) 15510 ENSMUSG00000084595.1 ENSMUSG00000084595 ENSMUST00000122646 n-R5s188 rRNA Interval_154773 chr8 23256275 23257669 + 0 NA promoter-TSS (ENSMUSG00000015341.17) protein_coding-promoter-TSS (ENSMUSG00000015341.17) 94 ENSMUSG00000015341.17 ENSMUSG00000015341 ENSMUST00000211602 Golga7 protein_coding Interval_147365 chr7 66179259 66179861 + 0 NA Intergenic Intergenic -6439 ENSMUSG00000097634.2 ENSMUSG00000097634 ENSMUST00000181911 Gm26827 antisense Interval_151009 chr7 117636370 117637089 + 0 NA intron (ENSMUSG00000030657.11, intron 7 of 11) protein_coding-intron (ENSMUSG00000030657.11, intron 7 of 11) -140065 ENSMUSG00000088116.1 ENSMUSG00000088116 ENSMUST00000157491 Gm24063 miRNA Interval_21352 chr10 128121230 128121683 + 0 NA intron (ENSMUSG00000040054.17, intron 15 of 28) protein_coding-intron (ENSMUSG00000040054.17, intron 16 of 29) 29874 ENSMUSG00000040054.17 ENSMUSG00000040054 ENSMUST00000219980 Baz2a protein_coding Interval_16963 chr10 70166264 70166576 + 0 NA intron (ENSMUSG00000048701.13, intron 3 of 8) protein_coding-intron (ENSMUSG00000048701.13, intron 3 of 8) -8591 ENSMUSG00000048701.13 ENSMUSG00000048701 ENSMUST00000135607 Ccdc6 protein_coding Interval_51195 chr14 24644032 24644766 + 0 NA intron (ENSMUSG00000089887.2, intron 2 of 5) lincRNA-intron (ENSMUSG00000089887.2, intron 2 of 5) 26842 ENSMUSG00000089887.2 ENSMUSG00000089887 ENSMUST00000159562 4930428N03Rik lincRNA Interval_92550 chr2 60530147 60531379 + 0 NA intron (ENSMUSG00000054580.14, intron 2 of 12) protein_coding-intron (ENSMUSG00000054580.14, intron 2 of 29) -19996 ENSMUSG00000086578.2 ENSMUSG00000086578 ENSMUST00000126361 Gm13583 antisense Interval_154670 chr8 22484728 22484947 + 0 NA intron (ENSMUSG00000037656.9, intron 1 of 1) protein_coding-intron (ENSMUSG00000037656.9, intron 1 of 10) 4546 ENSMUSG00000097042.2 ENSMUSG00000097042 ENSMUST00000180411 Gm17491 sense_intronic Interval_170923 chr9 112205102 112205352 + 0 NA exon (ENSMUSG00000032503.18, exon 3 of 3) protein_coding-exon (ENSMUSG00000032503.18, exon 3 of 3) -17301 ENSMUSG00000032503.18 ENSMUSG00000032503 ENSMUST00000162050 Arpp21 protein_coding Interval_117674 chr4 125495276 125496023 + 0 NA intron (ENSMUSG00000001985.9, intron 1 of 15) protein_coding-intron (ENSMUSG00000001985.9, intron 1 of 15) 4949 ENSMUSG00000001985.9 ENSMUSG00000001985 ENSMUST00000030676 Grik3 protein_coding Interval_106457 chr3 96476639 96477032 + 0 NA Intergenic Intergenic -8326 ENSMUSG00000098392.1 ENSMUSG00000098392 ENSMUST00000183561 Gm28001 rRNA Interval_27923 chr11 70902599 70903499 + 0 NA intron (ENSMUSG00000020817.16, intron 5 of 16) protein_coding-intron (ENSMUSG00000020817.16, intron 6 of 17) 6596 ENSMUSG00000084139.1 ENSMUSG00000084139 ENSMUST00000121605 Gm12322 processed_pseudogene Interval_74965 chr17 58404516 58405505 + 0 NA intron (ENSMUSG00000038048.8, intron 22 of 23) protein_coding-intron (ENSMUSG00000038048.8, intron 22 of 23) -57315 ENSMUSG00000117281.1 ENSMUSG00000117281 ENSMUST00000233462 Gm49848 processed_pseudogene Interval_74891 chr17 57095766 57096823 + 0 NA intron (ENSMUSG00000079414.3, intron 2 of 2) lincRNA-intron (ENSMUSG00000079414.3, intron 4 of 4) -8512 ENSMUSG00000062591.5 ENSMUSG00000062591 ENSMUST00000071135 Tubb4a protein_coding Interval_84956 chr19 20063377 20064030 + 0 NA Intergenic Intergenic -2945 ENSMUSG00000118150.1 ENSMUSG00000118150 ENSMUST00000237242 Gm3728 lincRNA Interval_17081 chr10 71251651 71252407 + 0 NA Intergenic Intergenic 4859 ENSMUSG00000019927.6 ENSMUSG00000019927 ENSMUST00000144231 Ube2d1 protein_coding Interval_43220 chr13 25639507 25640930 + 0 NA Intergenic Intergenic 40925 ENSMUSG00000082161.1 ENSMUSG00000082161 ENSMUST00000121436 Gm11350 processed_pseudogene Interval_134423 chr6 28550364 28551341 + 0 NA intron (ENSMUSG00000001424.14, intron 10 of 16) protein_coding-intron (ENSMUSG00000001424.14, intron 10 of 23) -12638 ENSMUSG00000104325.1 ENSMUSG00000104325 ENSMUST00000195742 Gm37321 TEC Interval_134203 chr6 22785295 22785585 + 0 NA Intergenic Intergenic -4378 ENSMUSG00000096721.1 ENSMUSG00000096721 ENSMUST00000180080 Gm25942 miRNA Interval_3071 chr1 52882728 52883003 + 0 NA intron (ENSMUSG00000041426.12, intron 6 of 6) protein_coding-intron (ENSMUSG00000041426.12, intron 6 of 13) -8867 ENSMUSG00000089802.1 ENSMUSG00000089802 ENSMUST00000162523 Gm16107 processed_pseudogene Interval_146259 chr7 45017299 45018289 + 0 NA promoter-TSS (ENSMUSG00000038387.9) protein_coding-promoter-TSS (ENSMUSG00000038387.9) -1676 ENSMUSG00000038387.9 ENSMUSG00000038387 ENSMUST00000210895 Rras protein_coding Interval_143929 chr7 18000945 18001959 + 0 NA Intergenic Intergenic -8437 ENSMUSG00000057195.13 ENSMUSG00000057195 ENSMUST00000108488 Ceacam13 protein_coding Interval_93114 chr2 70339574 70340978 + 0 NA intron (ENSMUSG00000042064.13, intron 29 of 33) protein_coding-intron (ENSMUSG00000042064.13, intron 30 of 34) -118706 ENSMUSG00000047965.9 ENSMUSG00000047965 ENSMUST00000140507 Rpl9-ps7 processed_pseudogene Interval_45988 chr13 59822559 59823619 + 0 NA promoter-TSS (ENSMUSG00000035248.9) protein_coding-promoter-TSS (ENSMUSG00000035248.9) -177 ENSMUSG00000114354.1 ENSMUSG00000114354 ENSMUST00000224737 Gm34961 lincRNA Interval_174487 chrX 153326495 153327385 + 0 NA intron (ENSMUSG00000041649.13, intron 2 of 6) protein_coding-intron (ENSMUSG00000041649.13, intron 2 of 6) 77130 ENSMUSG00000080743.2 ENSMUSG00000080743 ENSMUST00000122032 Gm7150 processed_pseudogene Interval_26248 chr11 55423174 55424076 + 0 NA promoter-TSS (ENSMUSG00000018593.13) protein_coding-promoter-TSS (ENSMUSG00000018593.13) -3300 ENSMUSG00000018593.13 ENSMUSG00000018593 ENSMUST00000125787 Sparc protein_coding Interval_26423 chr11 57767623 57768004 + 0 NA intron (ENSMUSG00000020520.14, intron 5 of 11) protein_coding-intron (ENSMUSG00000020520.14, intron 5 of 11) 3386 ENSMUSG00000065806.1 ENSMUSG00000065806 ENSMUST00000083872 n-R5s69 rRNA Interval_63047 chr15 98805341 98807568 + 0 NA promoter-TSS (ENSMUSG00000097414.2) antisense-promoter-TSS (ENSMUSG00000097414.2) 3036 ENSMUSG00000059213.7 ENSMUSG00000059213 ENSMUST00000230409 Ddn protein_coding Interval_17970 chr10 81136179 81138334 + 0 NA promoter-TSS (ENSMUSG00000035011.15) protein_coding-promoter-TSS (ENSMUSG00000035011.15) 690 ENSMUSG00000035011.15 ENSMUSG00000035011 ENSMUST00000117956 Zbtb7a protein_coding Interval_110186 chr3 154064796 154065278 + 0 NA intron (ENSMUSG00000028360.10, intron 1 of 21) protein_coding-intron (ENSMUSG00000028360.10, intron 1 of 21) 18114 ENSMUSG00000028360.10 ENSMUSG00000028360 ENSMUST00000144677 Slc44a5 protein_coding Interval_135607 chr6 41529973 41530197 + 0 NA Intergenic Intergenic -3116 ENSMUSG00000095668.1 ENSMUSG00000095668 ENSMUST00000178537 Trbd1 TR_D_gene Interval_156918 chr8 61677012 61677915 + 0 NA intron (ENSMUSG00000058056.16, intron 10 of 21) protein_coding-intron (ENSMUSG00000058056.16, intron 10 of 19) 144053 ENSMUSG00000110131.1 ENSMUSG00000110131 ENSMUST00000210904 Gm18066 processed_pseudogene Interval_31526 chr11 101173598 101174309 + 0 NA exon (ENSMUSG00000044052.3, exon 2 of 2) protein_coding-exon (ENSMUSG00000044052.3, exon 2 of 2) 1490 ENSMUSG00000044052.3 ENSMUSG00000044052 ENSMUST00000062759 Ccr10 protein_coding Interval_36395 chr12 43225469 43226596 + 0 NA Intergenic Intergenic -80111 ENSMUSG00000112904.1 ENSMUSG00000112904 ENSMUST00000217732 Gm47030 lincRNA Interval_38717 chr12 81530557 81531048 + 0 NA intron (ENSMUSG00000090935.10, intron 1 of 2) protein_coding-intron (ENSMUSG00000021139.17, intron 1 of 4) 2075 ENSMUSG00000021139.17 ENSMUSG00000021139 ENSMUST00000110339 Gm20498 protein_coding Interval_79432 chr18 31862841 31863283 + 0 NA intron (ENSMUSG00000024400.16, intron 7 of 21) protein_coding-intron (ENSMUSG00000024400.16, intron 7 of 21) -42543 ENSMUSG00000091561.3 ENSMUSG00000091561 ENSMUST00000165131 Gm6665 processed_pseudogene Interval_95667 chr2 113858007 113858918 + 0 NA Intergenic Intergenic -9847 ENSMUSG00000041219.14 ENSMUSG00000041219 ENSMUST00000110947 Arhgap11a protein_coding Interval_7656 chr1 132866682 132866982 + 0 NA Intergenic Intergenic -13523 ENSMUSG00000026443.3 ENSMUSG00000026443 ENSMUST00000159088 Lrrn2 protein_coding Interval_44998 chr13 51280135 51280655 + 0 NA Intergenic Intergenic -58526 ENSMUSG00000113426.1 ENSMUSG00000113426 ENSMUST00000221253 Gm6056 processed_pseudogene Interval_101961 chr3 13379091 13379905 + 0 NA Intergenic Intergenic -50060 ENSMUSG00000104065.1 ENSMUSG00000104065 ENSMUST00000195607 Gm37197 processed_pseudogene Interval_96495 chr2 125089239 125089782 + 0 NA promoter-TSS (ENSMUSG00000027201.16) protein_coding-promoter-TSS (ENSMUSG00000027201.16) 9155 ENSMUSG00000035183.14 ENSMUSG00000035183 ENSMUST00000149963 Slc24a5 protein_coding Interval_111243 chr4 15862038 15862538 + 0 NA Intergenic Intergenic -23169 ENSMUSG00000028222.2 ENSMUSG00000028222 ENSMUST00000141336 Calb1 protein_coding Interval_97151 chr2 131795842 131797300 + 0 NA Intergenic Intergenic 49024 ENSMUSG00000081422.1 ENSMUSG00000081422 ENSMUST00000119484 Gm14282 transcribed_processed_pseudogene Interval_84845 chr19 17417305 17418157 + 0 NA Intergenic Intergenic 20294 ENSMUSG00000024712.9 ENSMUSG00000024712 ENSMUST00000146171 Rfk protein_coding Interval_130958 chr5 134259948 134260511 + 0 NA promoter-TSS (ENSMUSG00000060261.15) protein_coding-promoter-TSS (ENSMUSG00000060261.15) 10507 ENSMUSG00000107000.1 ENSMUSG00000107000 ENSMUST00000201715 Gm43481 TEC Interval_161828 chr8 123064863 123066416 + 0 NA exon (ENSMUSG00000000738.18, exon 1 of 3) protein_coding-exon (ENSMUSG00000000738.18, exon 1 of 3) 23173 ENSMUSG00000099881.1 ENSMUSG00000099881 ENSMUST00000186531 2810013P06Rik bidirectional_promoter_lncRNA Interval_60754 chr15 76543984 76544168 + 0 NA exon (ENSMUSG00000022560.9, exon 5 of 5) protein_coding-exon (ENSMUSG00000022560.9, exon 5 of 5) 5112 ENSMUSG00000022560.9 ENSMUSG00000022560 ENSMUST00000230994 Slc52a2 protein_coding Interval_140511 chr6 119079155 119080406 + 0 NA exon (ENSMUSG00000051331.16, exon 1 of 48) protein_coding-exon (ENSMUSG00000051331.16, exon 1 of 48) -112576 ENSMUSG00000041477.14 ENSMUSG00000041477 ENSMUST00000127059 Dcp1b protein_coding Interval_153186 chr7 142230700 142232351 + 0 NA Intergenic Intergenic -1554 ENSMUSG00000073785.2 ENSMUSG00000073785 ENSMUST00000097942 Krtap5-5 protein_coding Interval_114046 chr4 62735468 62736558 + 0 NA Intergenic Intergenic -8476 ENSMUSG00000086139.1 ENSMUSG00000086139 ENSMUST00000143618 Gm11211 lincRNA Interval_63323 chr15 100304169 100305557 + 0 NA promoter-TSS (ENSMUSG00000054619.7) protein_coding-promoter-TSS (ENSMUSG00000054619.7) 635 ENSMUSG00000054619.7 ENSMUSG00000054619 ENSMUST00000230018 Mettl7a1 protein_coding Interval_3609 chr1 59969356 59969822 + 0 NA intron (ENSMUSG00000041040.12, intron 5 of 7) protein_coding-intron (ENSMUSG00000041040.12, intron 5 of 7) -9592 ENSMUSG00000041040.12 ENSMUSG00000041040 ENSMUST00000189790 Fam117b protein_coding Interval_27813 chr11 70144512 70145863 + 0 NA Intergenic Intergenic 14763 ENSMUSG00000040950.13 ENSMUSG00000040950 ENSMUST00000108584 Mgl2 protein_coding Interval_26718 chr11 59956695 59956905 + 0 NA intron (ENSMUSG00000061650.6, intron 1 of 1) protein_coding-intron (ENSMUSG00000061650.6, intron 1 of 1) 8144 ENSMUSG00000049892.7 ENSMUSG00000049892 ENSMUST00000062405 Rasd1 protein_coding Interval_140944 chr6 122918625 122919451 + 0 NA Intergenic Intergenic -2810 ENSMUSG00000049037.8 ENSMUSG00000049037 ENSMUST00000060484 Clec4a1 protein_coding Interval_47182 chr13 77260459 77260653 + 0 NA intron (ENSMUSG00000071252.6, intron 3 of 3) protein_coding-intron (ENSMUSG00000071252.6, intron 7 of 19) 91178 ENSMUSG00000114256.1 ENSMUSG00000114256 ENSMUST00000225012 Gm29844 processed_pseudogene Interval_88742 chr2 10153046 10154024 + 0 NA promoter-TSS (ENSMUSG00000025780.7) protein_coding-promoter-TSS (ENSMUSG00000025780.7) -36 ENSMUSG00000025780.7 ENSMUSG00000025780 ENSMUST00000026886 Itih5 protein_coding Interval_87338 chr19 47811757 47815534 + 0 NA intron (ENSMUSG00000044948.17, intron 7 of 37) protein_coding-intron (ENSMUSG00000044948.17, intron 7 of 13) -41393 ENSMUSG00000025068.8 ENSMUSG00000025068 ENSMUST00000143694 Gsto1 protein_coding Interval_92185 chr2 55527852 55528043 + 0 NA intron (ENSMUSG00000026824.11, intron 2 of 2) protein_coding-intron (ENSMUSG00000026824.11, intron 3 of 3) 90791 ENSMUSG00000026824.11 ENSMUSG00000026824 ENSMUST00000112632 Kcnj3 protein_coding Interval_159979 chr8 105545106 105545296 + 0 NA intron (ENSMUSG00000013160.7, intron 1 of 7) protein_coding-intron (ENSMUSG00000013160.7, intron 1 of 7) -5725 ENSMUSG00000013160.7 ENSMUSG00000013160 ENSMUST00000144486 Atp6v0d1 protein_coding Interval_140315 chr6 116397499 116398096 + 0 NA intron (ENSMUSG00000025702.15, intron 3 of 5) protein_coding-intron (ENSMUSG00000025702.15, intron 4 of 7) 8335 ENSMUSG00000107556.1 ENSMUSG00000107556 ENSMUST00000205183 Gm44237 TEC Interval_85408 chr19 25563939 25565101 + 0 NA intron (ENSMUSG00000024837.15, intron 3 of 3) protein_coding-intron (ENSMUSG00000024837.15, intron 4 of 4) -45781 ENSMUSG00000042372.5 ENSMUSG00000042372 ENSMUST00000048935 Dmrt3 protein_coding Interval_163942 chr9 29453275 29453559 + 0 NA intron (ENSMUSG00000059974.10, intron 1 of 2) protein_coding-intron (ENSMUSG00000059974.10, intron 1 of 7) 139093 ENSMUSG00000085638.1 ENSMUSG00000085638 ENSMUST00000141752 Gm15521 sense_intronic Interval_139610 chr6 102811973 102812180 + 0 NA Intergenic Intergenic 17692 ENSMUSG00000098533.1 ENSMUSG00000098533 ENSMUST00000183546 Mir6373 miRNA Interval_139149 chr6 96287242 96290049 + 0 NA intron (ENSMUSG00000059187.12, intron 2 of 4) protein_coding-intron (ENSMUSG00000059187.12, intron 1 of 3) -122402 ENSMUSG00000072878.4 ENSMUSG00000072878 ENSMUST00000090061 1700123L14Rik protein_coding Interval_17866 chr10 80487103 80487703 + 0 NA Intergenic Intergenic -7432 ENSMUSG00000045518.8 ENSMUSG00000045518 ENSMUST00000051773 Onecut3 protein_coding Interval_6754 chr1 119225992 119226316 + 0 NA Intergenic Intergenic 16599 ENSMUSG00000100767.1 ENSMUSG00000100767 ENSMUST00000186012 Gm3508 processed_pseudogene Interval_10800 chr1 175118921 175119503 + 0 NA intron (ENSMUSG00000026527.13, intron 9 of 17) protein_coding-intron (ENSMUSG00000026527.13, intron 8 of 15) -33032 ENSMUSG00000026527.13 ENSMUSG00000026527 ENSMUST00000193798 Rgs7 protein_coding Interval_5697 chr1 91017067 91017714 + 0 NA intron (ENSMUSG00000026305.15, intron 1 of 12) protein_coding-intron (ENSMUSG00000026305.15, intron 1 of 12) -36196 ENSMUSG00000026305.15 ENSMUSG00000026305 ENSMUST00000187532 Lrrfip1 protein_coding Interval_125501 chr5 67729971 67730221 + 0 NA intron (ENSMUSG00000037685.15, intron 18 of 33) protein_coding-intron (ENSMUSG00000037685.15, intron 21 of 36) 29234 ENSMUSG00000106859.1 ENSMUSG00000106859 ENSMUST00000201074 Gm42737 TEC Interval_146194 chr7 44630045 44630869 + 0 NA exon (ENSMUSG00000030739.18, exon 1 of 2) protein_coding-exon (ENSMUSG00000030739.18, exon 1 of 2) 2328 ENSMUSG00000030739.18 ENSMUSG00000030739 ENSMUST00000208131 Myh14 protein_coding Interval_143442 chr7 6810473 6810759 + 0 NA exon (ENSMUSG00000109456.1, exon 1 of 1) TEC-exon (ENSMUSG00000109456.1, exon 1 of 1) 1615 ENSMUSG00000109456.1 ENSMUSG00000109456 ENSMUST00000208395 Gm44584 TEC Interval_144317 chr7 24457854 24458185 + 0 NA Intergenic Intergenic -4481 ENSMUSG00000046223.10 ENSMUSG00000046223 ENSMUST00000206636 Plaur protein_coding Interval_137481 chr6 72699118 72699804 + 0 NA intron (ENSMUSG00000079524.2, intron 1 of 1) protein_coding-intron (ENSMUSG00000055799.13, intron 3 of 11) 247 ENSMUSG00000079524.2 ENSMUSG00000079524 ENSMUST00000114051 Gm15402 antisense Interval_40429 chr12 104829751 104830657 + 0 NA intron (ENSMUSG00000021097.15, intron 1 of 14) protein_coding-intron (ENSMUSG00000021097.15, intron 1 of 12) -27167 ENSMUSG00000021101.2 ENSMUSG00000021101 ENSMUST00000021520 4930408O17Rik lincRNA Interval_123345 chr5 31595849 31597355 + 0 NA promoter-TSS (ENSMUSG00000105617.4) processed_transcript-promoter-TSS (ENSMUSG00000105617.4) -2131 ENSMUSG00000106918.3 ENSMUSG00000106918 ENSMUST00000202690 Mrpl33 protein_coding Interval_126508 chr5 89370372 89371509 + 0 NA Intergenic Intergenic 64688 ENSMUSG00000035540.12 ENSMUSG00000035540 ENSMUST00000200534 Gc protein_coding Interval_158355 chr8 82689409 82689630 + 0 NA Intergenic Intergenic -58097 ENSMUSG00000109893.1 ENSMUSG00000109893 ENSMUST00000211321 Gm9655 processed_pseudogene Interval_18906 chr10 93014441 93014651 + 0 NA intron (ENSMUSG00000020014.17, intron 20 of 67) protein_coding-intron (ENSMUSG00000020014.17, intron 20 of 66) 18416 ENSMUSG00000020014.17 ENSMUSG00000020014 ENSMUST00000171781 Cfap54 protein_coding Interval_134676 chr6 30289878 30290797 + 0 NA intron (ENSMUSG00000039159.16, intron 1 of 4) protein_coding-intron (ENSMUSG00000039159.16, intron 1 of 4) 14191 ENSMUSG00000039159.16 ENSMUSG00000039159 ENSMUST00000148744 Ube2h protein_coding Interval_71854 chr17 26542556 26543409 + 0 NA intron (ENSMUSG00000068604.4, intron 1 of 1) processed_pseudogene-intron (ENSMUSG00000068604.4, intron 1 of 1) 222 ENSMUSG00000068604.4 ENSMUSG00000068604 ENSMUST00000090257 Gm8225 processed_pseudogene Interval_18457 chr10 86286131 86286900 + 0 NA intron (ENSMUSG00000059602.14, intron 6 of 8) protein_coding-intron (ENSMUSG00000059602.14, intron 6 of 13) -14039 ENSMUSG00000020044.13 ENSMUSG00000020044 ENSMUST00000132307 Timp3 protein_coding Interval_5781 chr1 91768704 91769376 + 0 NA Intergenic Intergenic -32430 ENSMUSG00000007805.4 ENSMUSG00000007805 ENSMUST00000186075 Twist2 protein_coding Interval_12850 chr10 6486836 6487455 + 0 NA Intergenic Intergenic 39729 ENSMUSG00000111902.1 ENSMUSG00000111902 ENSMUST00000219804 Gm4921 processed_pseudogene Interval_120885 chr4 151302177 151303057 + 0 NA intron (ENSMUSG00000014592.21, intron 5 of 24) protein_coding-intron (ENSMUSG00000014592.21, intron 5 of 23) -73853 ENSMUSG00000085593.1 ENSMUSG00000085593 ENSMUST00000129097 4930589P08Rik antisense Interval_14251 chr10 29790328 29790568 + 0 NA Intergenic Intergenic 9037 ENSMUSG00000111427.1 ENSMUSG00000111427 ENSMUST00000215034 Gm6390 processed_pseudogene Interval_124413 chr5 45669066 45670541 + 0 NA promoter-TSS (ENSMUSG00000015880.13) protein_coding-promoter-TSS (ENSMUSG00000015880.13) -95 ENSMUSG00000104986.1 ENSMUSG00000104986 ENSMUST00000196242 1600023N17Rik TEC Interval_168199 chr9 77927190 77928273 + 0 NA intron (ENSMUSG00000032349.13, intron 1 of 5) protein_coding-intron (ENSMUSG00000032349.13, intron 1 of 7) 10297 ENSMUSG00000032349.13 ENSMUSG00000032349 ENSMUST00000134072 Elovl5 protein_coding Interval_162596 chr9 5586049 5586879 + 0 NA Intergenic Intergenic -210315 ENSMUSG00000110927.1 ENSMUSG00000110927 ENSMUST00000213873 Gm48506 processed_pseudogene Interval_141700 chr6 133812083 133812840 + 0 NA Intergenic Intergenic 41212 ENSMUSG00000032758.4 ENSMUSG00000032758 ENSMUST00000203168 Kap protein_coding Interval_133139 chr5 150118176 150119409 + 0 NA exon (ENSMUSG00000056602.12, exon 1 of 5) protein_coding-exon (ENSMUSG00000056602.12, exon 1 of 5) -35997 ENSMUSG00000107384.1 ENSMUSG00000107384 ENSMUST00000202037 Gm42557 antisense Interval_46278 chr13 63323287 63323958 + 0 NA intron (ENSMUSG00000021461.17, intron 11 of 13) protein_coding-intron (ENSMUSG00000021461.17, intron 11 of 15) -5934 ENSMUSG00000089854.2 ENSMUSG00000089854 ENSMUST00000160065 Gm16133 antisense Interval_164028 chr9 31038354 31038705 + 0 NA intron (ENSMUSG00000047412.16, intron 1 of 5) protein_coding-intron (ENSMUSG00000047412.16, intron 1 of 5) -14710 ENSMUSG00000047412.16 ENSMUSG00000047412 ENSMUST00000213202 Zbtb44 protein_coding Interval_84507 chr19 11954223 11954547 + 0 NA Intergenic Intergenic -11556 ENSMUSG00000024687.11 ENSMUSG00000024687 ENSMUST00000025590 Osbp protein_coding Interval_149721 chr7 100931021 100933201 + 0 NA promoter-TSS (ENSMUSG00000032875.8) protein_coding-promoter-TSS (ENSMUSG00000032875.8) -18706 ENSMUSG00000109132.1 ENSMUSG00000109132 ENSMUST00000208262 Gm44545 TEC Interval_77637 chr17 93433645 93435403 + 0 NA Intergenic Intergenic -42826 ENSMUSG00000117368.1 ENSMUSG00000117368 ENSMUST00000234726 Gm50001 processed_pseudogene Interval_12257 chr1 191171581 191172768 + 0 NA intron (ENSMUSG00000026628.13, intron 3 of 3) protein_coding-intron (ENSMUSG00000026628.13, intron 3 of 3) -7357 ENSMUSG00000091017.1 ENSMUSG00000091017 ENSMUST00000171798 Fam71a protein_coding Interval_87810 chr19 56133780 56134774 + 0 NA intron (ENSMUSG00000117695.1, intron 4 of 4) lincRNA-intron (ENSMUSG00000117695.1, intron 4 of 4) 27967 ENSMUSG00000117695.1 ENSMUSG00000117695 ENSMUST00000238174 Gm31912 lincRNA Interval_18943 chr10 93284558 93285508 + 0 NA intron (ENSMUSG00000008398.16, intron 1 of 3) protein_coding-intron (ENSMUSG00000008398.16, intron 1 of 4) 25936 ENSMUSG00000008398.16 ENSMUSG00000008398 ENSMUST00000133365 Elk3 protein_coding Interval_37132 chr12 58799084 58799462 + 0 NA Intergenic Intergenic -14610 ENSMUSG00000112785.1 ENSMUSG00000112785 ENSMUST00000220177 Gm47645 lincRNA Interval_120589 chr4 149546994 149547200 + 0 NA intron (ENSMUSG00000028988.13, intron 3 of 3) protein_coding-intron (ENSMUSG00000028988.13, intron 4 of 4) 1980 ENSMUSG00000028988.13 ENSMUSG00000028988 ENSMUST00000105692 Ctnnbip1 protein_coding Interval_45974 chr13 59718316 59719378 + 0 NA exon (ENSMUSG00000091311.3, exon 4 of 4) protein_coding-exon (ENSMUSG00000091311.3, exon 4 of 4) 6563 ENSMUSG00000091311.3 ENSMUSG00000091311 ENSMUST00000165133 Spata31d1b protein_coding Interval_61027 chr15 78844673 78845561 + 0 NA intron (ENSMUSG00000049521.2, intron 1 of 2) protein_coding-intron (ENSMUSG00000049521.2, intron 1 of 2) 2493 ENSMUSG00000049521.2 ENSMUSG00000049521 ENSMUST00000059619 Cdc42ep1 protein_coding Interval_1174 chr1 16612998 16613198 + 0 NA intron (ENSMUSG00000025939.19, intron 1 of 6) protein_coding-intron (ENSMUSG00000025939.19, intron 1 of 5) -5462 ENSMUSG00000102457.1 ENSMUSG00000102457 ENSMUST00000195710 Gm38342 TEC Interval_161592 chr8 121439485 121439676 + 0 NA intron (ENSMUSG00000092329.1, intron 1 of 15) protein_coding-intron (ENSMUSG00000092329.1, intron 1 of 15) 4600 ENSMUSG00000097438.1 ENSMUSG00000097438 ENSMUST00000181666 Gm26784 lincRNA Interval_160462 chr8 109705044 109707100 + 0 NA promoter-TSS (ENSMUSG00000031728.10) protein_coding-promoter-TSS (ENSMUSG00000031728.10) 526 ENSMUSG00000031728.10 ENSMUSG00000031728 ENSMUST00000211918 Zfp821 protein_coding Interval_110168 chr3 153929392 153930549 + 0 NA TTS (ENSMUSG00000062908.12) protein_coding-TTS (ENSMUSG00000062908.12) 7839 ENSMUSG00000062908.12 ENSMUSG00000062908 ENSMUST00000135724 Acadm protein_coding Interval_101795 chr3 9593741 9594294 + 0 NA intron (ENSMUSG00000040209.12, intron 1 of 8) protein_coding-intron (ENSMUSG00000040209.12, intron 1 of 8) -28718 ENSMUSG00000040209.12 ENSMUSG00000040209 ENSMUST00000192832 Zfp704 protein_coding Interval_96390 chr2 122125553 122126695 + 0 NA exon (ENSMUSG00000027233.4, exon 8 of 18) protein_coding-exon (ENSMUSG00000027233.4, exon 8 of 18) -7749 ENSMUSG00000033396.13 ENSMUSG00000033396 ENSMUST00000135847 Spg11 protein_coding Interval_79553 chr18 33741107 33741293 + 0 NA Intergenic Intergenic -53739 ENSMUSG00000087590.2 ENSMUSG00000087590 ENSMUST00000179138 Epb41l4aos lincRNA Interval_142034 chr6 136645687 136646855 + 0 NA intron (ENSMUSG00000030214.7, intron 2 of 8) protein_coding-intron (ENSMUSG00000030214.7, intron 2 of 10) 15602 ENSMUSG00000030214.7 ENSMUSG00000030214 ENSMUST00000133911 Plbd1 protein_coding Interval_131335 chr5 136540400 136541161 + 0 NA intron (ENSMUSG00000029705.17, intron 1 of 1) protein_coding-intron (ENSMUSG00000029705.17, intron 1 of 23) -4303 ENSMUSG00000104369.1 ENSMUSG00000104369 ENSMUST00000192800 Gm38082 TEC Interval_38721 chr12 81594757 81595733 + 0 NA promoter-TSS (ENSMUSG00000002679.14) protein_coding-promoter-TSS (ENSMUSG00000002679.14) -1296 ENSMUSG00000002679.14 ENSMUSG00000002679 ENSMUST00000159187 Med6 protein_coding Interval_83983 chr19 5937140 5938914 + 0 NA Intergenic Intergenic -13211 ENSMUSG00000045664.5 ENSMUSG00000045664 ENSMUST00000055458 Cdc42ep2 protein_coding Interval_147572 chr7 68344666 68345328 + 0 NA intron (ENSMUSG00000086410.7, intron 1 of 1) protein_coding-intron (ENSMUSG00000074071.11, intron 5 of 8) 8204 ENSMUSG00000086410.7 ENSMUSG00000086410 ENSMUST00000129965 Gm16158 antisense Interval_40507 chr12 105347600 105348658 + 0 NA intron (ENSMUSG00000097929.9, intron 2 of 3) protein_coding-intron (ENSMUSG00000097929.9, intron 2 of 2) 14259 ENSMUSG00000097929.9 ENSMUSG00000097929 ENSMUST00000180503 Tunar protein_coding Interval_30053 chr11 88904078 88904590 + 0 NA promoter-TSS (ENSMUSG00000065012.1) snRNA-promoter-TSS (ENSMUSG00000065012.1) -787 ENSMUSG00000065012.1 ENSMUSG00000065012 ENSMUST00000083078 Gm23507 snRNA Interval_20255 chr10 116463714 116464181 + 0 NA exon (ENSMUSG00000054934.10, exon 2 of 2) protein_coding-exon (ENSMUSG00000054934.10, exon 2 of 2) -9216 ENSMUSG00000085837.8 ENSMUSG00000085837 ENSMUST00000123348 Kcnmb4os2 antisense Interval_19214 chr10 95544150 95546685 + 0 NA exon (ENSMUSG00000074781.5, exon 4 of 4) protein_coding-exon (ENSMUSG00000074781.5, exon 4 of 4) 13904 ENSMUSG00000092867.1 ENSMUSG00000092867 ENSMUST00000175126 Mir3058 miRNA Interval_134865 chr6 32797121 32798282 + 0 NA intron (ENSMUSG00000053768.13, intron 1 of 2) protein_coding-intron (ENSMUSG00000053768.13, intron 7 of 7) -45413 ENSMUSG00000106873.1 ENSMUSG00000106873 ENSMUST00000202626 BC049739 lincRNA Interval_140909 chr6 122706941 122708098 + 0 NA promoter-TSS (ENSMUSG00000012396.12) protein_coding-promoter-TSS (ENSMUSG00000012396.12) 30 ENSMUSG00000012396.12 ENSMUSG00000012396 ENSMUST00000012540 Nanog protein_coding Interval_33674 chr11 117863165 117864144 + 0 NA intron (ENSMUSG00000070330.2, intron 3 of 3) protein_coding-intron (ENSMUSG00000070330.2, intron 3 of 3) 2902 ENSMUSG00000070330.2 ENSMUSG00000070330 ENSMUST00000093905 Tmem235 protein_coding Interval_82616 chr18 75449601 75450508 + 0 NA intron (ENSMUSG00000052928.9, intron 10 of 11) protein_coding-intron (ENSMUSG00000052928.9, intron 10 of 11) -64591 ENSMUSG00000097712.1 ENSMUSG00000097712 ENSMUST00000181913 Gm10532 antisense Interval_37111 chr12 58524160 58524503 + 0 NA Intergenic Intergenic -239575 ENSMUSG00000112487.1 ENSMUSG00000112487 ENSMUST00000219517 Gm18873 processed_pseudogene Interval_83568 chr18 89861494 89861775 + 0 NA Intergenic Intergenic 82678 ENSMUSG00000098126.1 ENSMUSG00000098126 ENSMUST00000182270 Gm27037 processed_pseudogene Interval_63890 chr16 4285250 4285475 + 0 NA Intergenic Intergenic 35318 ENSMUSG00000084304.1 ENSMUSG00000084304 ENSMUST00000120290 Gm6142 processed_pseudogene Interval_43448 chr13 31079861 31080675 + 0 NA Intergenic Intergenic -2423 ENSMUSG00000114161.1 ENSMUSG00000114161 ENSMUST00000220673 Gm48662 lincRNA Interval_55754 chr14 99591074 99591333 + 0 NA Intergenic Intergenic 28813 ENSMUSG00000115550.1 ENSMUSG00000115550 ENSMUST00000226602 Gm49225 lincRNA Interval_145629 chr7 36412734 36413090 + 0 NA Intergenic Intergenic -17699 ENSMUSG00000093216.1 ENSMUSG00000093216 ENSMUST00000175475 Gm25247 miRNA Interval_92522 chr2 60267011 60270216 + 0 NA intron (ENSMUSG00000060703.12, intron 2 of 5) protein_coding-intron (ENSMUSG00000060703.12, intron 2 of 4) 6961 ENSMUSG00000080198.2 ENSMUSG00000080198 ENSMUST00000116410 Rpl10a-ps4 processed_pseudogene Interval_8703 chr1 149168850 149169109 + 0 NA Intergenic Intergenic -4081 ENSMUSG00000101457.1 ENSMUSG00000101457 ENSMUST00000188281 Gm18701 processed_pseudogene Interval_157739 chr8 72654731 72656028 + 0 NA intron (ENSMUSG00000048148.18, intron 2 of 18) protein_coding-intron (ENSMUSG00000048148.18, intron 2 of 18) 5085 ENSMUSG00000048148.18 ENSMUSG00000048148 ENSMUST00000162248 Nwd1 protein_coding Interval_78836 chr18 20910729 20912071 + 0 NA Intergenic Intergenic -15307 ENSMUSG00000033382.15 ENSMUSG00000033382 ENSMUST00000224530 Trappc8 protein_coding Interval_70677 chr17 12976216 12976510 + 0 NA intron (ENSMUSG00000060475.13, intron 5 of 5) protein_coding-intron (ENSMUSG00000060475.13, intron 5 of 7) 13595 ENSMUSG00000089695.2 ENSMUSG00000089695 ENSMUST00000160654 Gm15946 processed_pseudogene Interval_136093 chr6 50783849 50784510 + 0 NA intron (ENSMUSG00000107667.2, intron 1 of 2) lincRNA-intron (ENSMUSG00000107667.2, intron 1 of 2) 8064 ENSMUSG00000107667.2 ENSMUSG00000107667 ENSMUST00000204275 C530044C16Rik lincRNA Interval_130986 chr5 134418532 134420451 + 0 NA intron (ENSMUSG00000023079.14, intron 1 of 3) protein_coding-intron (ENSMUSG00000023079.14, intron 1 of 30) 3252 ENSMUSG00000077437.1 ENSMUSG00000077437 ENSMUST00000104249 n-R5s178 rRNA Interval_135247 chr6 37813120 37813614 + 0 NA Intergenic Intergenic 7281 ENSMUSG00000080242.5 ENSMUSG00000080242 ENSMUST00000122373 Atp6v0c-ps2 processed_pseudogene Interval_103079 chr3 35096678 35096959 + 0 NA Intergenic Intergenic -174167 ENSMUSG00000098862.1 ENSMUSG00000098862 ENSMUST00000183357 Mir6378 miRNA Interval_11698 chr1 184743846 184744036 + 0 NA Intergenic Intergenic 6964 ENSMUSG00000102158.1 ENSMUSG00000102158 ENSMUST00000192139 Gm34342 lincRNA Interval_64161 chr16 8778333 8779177 + 0 NA intron (ENSMUSG00000022710.17, intron 1 of 31) protein_coding-intron (ENSMUSG00000022710.17, intron 1 of 31) -12479 ENSMUSG00000084737.1 ENSMUSG00000084737 ENSMUST00000122788 Gm25805 snRNA Interval_73118 chr17 34910730 34912624 + 0 NA TTS (ENSMUSG00000013787.15) protein_coding-TTS (ENSMUSG00000013787.15) -2789 ENSMUSG00000007034.15 ENSMUSG00000007034 ENSMUST00000169230 Slc44a4 protein_coding Interval_92707 chr2 63485019 63485309 + 0 NA Intergenic Intergenic -52970 ENSMUSG00000065837.1 ENSMUSG00000065837 ENSMUST00000083903 Gm23503 snRNA Interval_172669 chrX 41948306 41949111 + 0 NA promoter-TSS (ENSMUSG00000104879.1) miRNA-promoter-TSS (ENSMUSG00000104879.1) -124 ENSMUSG00000104879.1 ENSMUSG00000104879 ENSMUST00000198566 Gm44490 miRNA Interval_12998 chr10 9019662 9020284 + 0 NA Intergenic Intergenic 51502 ENSMUSG00000111077.1 ENSMUSG00000111077 ENSMUST00000216441 Gm48743 TEC Interval_96872 chr2 129162875 129163788 + 0 NA intron (ENSMUSG00000084826.7, intron 1 of 1) antisense-intron (ENSMUSG00000084826.7, intron 1 of 1) -5369 ENSMUSG00000082274.1 ENSMUSG00000082274 ENSMUST00000120625 Gm14026 processed_pseudogene Interval_124015 chr5 37241565 37242523 + 0 NA promoter-TSS (ENSMUSG00000029121.16) protein_coding-promoter-TSS (ENSMUSG00000029121.16) -5241 ENSMUSG00000029121.16 ENSMUSG00000029121 ENSMUST00000200834 Crmp1 protein_coding Interval_165958 chr9 54955615 54955815 + 0 NA TTS (ENSMUSG00000032301.13) protein_coding-TTS (ENSMUSG00000032301.13) -4717 ENSMUSG00000044820.6 ENSMUSG00000044820 ENSMUST00000054018 AY074887 protein_coding Interval_20575 chr10 119146352 119147061 + 0 NA intron (ENSMUSG00000112161.1, intron 1 of 5) lincRNA-intron (ENSMUSG00000112161.1, intron 1 of 5) 19679 ENSMUSG00000112161.1 ENSMUSG00000112161 ENSMUST00000217700 Gm34045 lincRNA Interval_110381 chr3 157581446 157581958 + 0 NA intron (ENSMUSG00000040016.16, intron 1 of 1) protein_coding-intron (ENSMUSG00000040016.16, intron 1 of 2) 14802 ENSMUSG00000040016.16 ENSMUSG00000040016 ENSMUST00000173533 Ptger3 protein_coding Interval_166646 chr9 61578854 61579300 + 0 NA Intergenic Intergenic 69354 ENSMUSG00000111381.1 ENSMUSG00000111381 ENSMUST00000213400 Gm34424 transcribed_processed_pseudogene Interval_37443 chr12 68880780 68881384 + 0 NA Intergenic Intergenic -68785 ENSMUSG00000112933.1 ENSMUSG00000112933 ENSMUST00000223294 Gm47491 processed_pseudogene Interval_129319 chr5 119052649 119052902 + 0 NA Intergenic Intergenic -55459 ENSMUSG00000100573.1 ENSMUSG00000100573 ENSMUST00000190550 1700081H04Rik lincRNA Interval_4893 chr1 81630313 81630874 + 0 NA Intergenic Intergenic -73110 ENSMUSG00000101986.1 ENSMUSG00000101986 ENSMUST00000191337 Gm6198 processed_pseudogene Interval_92985 chr2 69187578 69188353 + 0 NA intron (ENSMUSG00000034738.8, intron 15 of 15) protein_coding-intron (ENSMUSG00000034738.8, intron 15 of 15) 8660 ENSMUSG00000034738.8 ENSMUSG00000034738 ENSMUST00000141276 Nostrin protein_coding Interval_63527 chr15 101778049 101778272 + 0 NA intron (ENSMUSG00000056605.7, intron 2 of 3) protein_coding-intron (ENSMUSG00000056605.7, intron 7 of 8) 533 ENSMUSG00000056605.7 ENSMUSG00000056605 ENSMUST00000127671 Krt72 protein_coding Interval_130259 chr5 125262869 125263068 + 0 NA intron (ENSMUSG00000105039.1, intron 1 of 3) lincRNA-intron (ENSMUSG00000105039.1, intron 1 of 3) 9847 ENSMUSG00000105039.1 ENSMUSG00000105039 ENSMUST00000198586 Gm32585 lincRNA Interval_8394 chr1 138786479 138786814 + 0 NA Intergenic Intergenic 55808 ENSMUSG00000019230.14 ENSMUSG00000019230 ENSMUST00000194557 Lhx9 protein_coding Interval_33273 chr11 115596863 115597163 + 0 NA intron (ENSMUSG00000020740.13, intron 1 of 4) protein_coding-intron (ENSMUSG00000020740.13, intron 1 of 16) -4643 ENSMUSG00000089476.1 ENSMUSG00000089476 ENSMUST00000158851 Gm25364 snRNA Interval_108449 chr3 127322820 127323472 + 0 NA intron (ENSMUSG00000032826.19, intron 2 of 15) protein_coding-intron (ENSMUSG00000032826.19, intron 2 of 14) -23473 ENSMUSG00000106446.1 ENSMUSG00000106446 ENSMUST00000196407 Gm42970 TEC Interval_92969 chr2 69046078 69046334 + 0 NA intron (ENSMUSG00000027035.10, intron 4 of 10) protein_coding-intron (ENSMUSG00000027035.10, intron 4 of 9) 28110 ENSMUSG00000102662.1 ENSMUSG00000102662 ENSMUST00000193253 Gm38377 TEC Interval_44290 chr13 43374601 43375367 + 0 NA intron (ENSMUSG00000054021.6, intron 3 of 8) protein_coding-intron (ENSMUSG00000054021.6, intron 2 of 7) 9478 ENSMUSG00000054021.6 ENSMUSG00000054021 ENSMUST00000222106 Sirt5 protein_coding Interval_139508 chr6 100626149 100626417 + 0 NA TTS (ENSMUSG00000108019.1) processed_pseudogene-TTS (ENSMUSG00000108019.1) 657 ENSMUSG00000108019.1 ENSMUSG00000108019 ENSMUST00000203525 Gm44108 processed_pseudogene Interval_75685 chr17 70657546 70657832 + 0 NA intron (ENSMUSG00000003279.17, intron 3 of 9) protein_coding-intron (ENSMUSG00000003279.17, intron 8 of 14) 97893 ENSMUSG00000097282.1 ENSMUSG00000097282 ENSMUST00000181546 5031415H12Rik antisense Interval_99307 chr2 158833176 158834404 + 0 NA intron (ENSMUSG00000027655.14, intron 4 of 4) protein_coding-intron (ENSMUSG00000027655.14, intron 12 of 20) 6372 ENSMUSG00000027655.14 ENSMUSG00000027655 ENSMUST00000143195 Dhx35 protein_coding Interval_172079 chrX 6320256 6320756 + 0 NA exon (ENSMUSG00000023279.7, exon 1 of 2) protein_coding-exon (ENSMUSG00000023279.7, exon 1 of 2) 215 ENSMUSG00000023279.7 ENSMUSG00000023279 ENSMUST00000024049 Bmp15 protein_coding Interval_92666 chr2 62279204 62280238 + 0 NA intron (ENSMUSG00000026904.17, intron 15 of 26) protein_coding-intron (ENSMUSG00000026904.17, intron 14 of 24) -37669 ENSMUSG00000026904.17 ENSMUSG00000026904 ENSMUST00000156534 Slc4a10 protein_coding Interval_143555 chr7 12752277 12754034 + 0 NA Intergenic Intergenic -7553 ENSMUSG00000110031.1 ENSMUSG00000110031 ENSMUST00000209215 Gm18205 processed_pseudogene Interval_92227 chr2 57159663 57160263 + 0 NA intron (ENSMUSG00000084938.1, intron 1 of 2) processed_transcript-intron (ENSMUSG00000084938.1, intron 1 of 2) 21791 ENSMUSG00000084938.1 ENSMUSG00000084938 ENSMUST00000126549 BB557941 processed_transcript Interval_101975 chr3 14023884 14024310 + 0 NA intron (ENSMUSG00000039717.16, intron 1 of 6) protein_coding-intron (ENSMUSG00000039717.16, intron 1 of 7) 5665 ENSMUSG00000084684.1 ENSMUSG00000084684 ENSMUST00000122735 Gm22026 misc_RNA Interval_120078 chr4 141678178 141680237 + 0 NA exon (ENSMUSG00000078515.4, exon 10 of 10) protein_coding-exon (ENSMUSG00000078515.4, exon 10 of 10) 6392 ENSMUSG00000040715.12 ENSMUSG00000040715 ENSMUST00000105782 Rsc1a1 protein_coding Interval_145041 chr7 29624495 29624808 + 0 NA Intergenic Intergenic 32625 ENSMUSG00000065385.1 ENSMUSG00000065385 ENSMUST00000083451 n-R5s153 rRNA Interval_138950 chr6 93726401 93728097 + 0 NA intron (ENSMUSG00000045095.16, intron 12 of 24) protein_coding-intron (ENSMUSG00000045095.16, intron 11 of 21) -66523 ENSMUSG00000088627.1 ENSMUSG00000088627 ENSMUST00000158002 Gm23035 snRNA Interval_58239 chr15 31292447 31293199 + 0 NA TTS (ENSMUSG00000022237.17) protein_coding-TTS (ENSMUSG00000022237.17) 10734 ENSMUSG00000115418.1 ENSMUSG00000115418 ENSMUST00000228063 Gm49296 TEC Interval_39248 chr12 86168624 86169747 + 0 NA promoter-TSS (ENSMUSG00000097543.1) lincRNA-promoter-TSS (ENSMUSG00000097543.1) -156 ENSMUSG00000097543.1 ENSMUSG00000097543 ENSMUST00000181667 Gm805 lincRNA Interval_137853 chr6 82945884 82947681 + 0 NA promoter-TSS (ENSMUSG00000030041.9) protein_coding-promoter-TSS (ENSMUSG00000030041.9) -5998 ENSMUSG00000107701.1 ENSMUSG00000107701 ENSMUST00000203190 Gm19287 processed_pseudogene Interval_68853 chr16 87602843 87604697 + 0 NA Intergenic Intergenic 17350 ENSMUSG00000064670.1 ENSMUSG00000064670 ENSMUST00000082736 Gm22808 snRNA Interval_143763 chr7 16160596 16161529 + 0 NA TTS (ENSMUSG00000030376.8) protein_coding-TTS (ENSMUSG00000030376.8) -16684 ENSMUSG00000041420.18 ENSMUSG00000041420 ENSMUST00000176714 Meis3 protein_coding Interval_34572 chr12 5242826 5244033 + 0 NA intron (ENSMUSG00000020627.10, intron 1 of 11) protein_coding-intron (ENSMUSG00000020627.10, intron 2 of 13) -7465 ENSMUSG00000112020.1 ENSMUSG00000112020 ENSMUST00000219031 Gm48532 TEC Interval_63934 chr16 4642036 4642474 + 0 NA intron (ENSMUSG00000004069.17, intron 1 of 3) protein_coding-intron (ENSMUSG00000039637.15, intron 9 of 27) 2287 ENSMUSG00000039646.5 ENSMUSG00000039646 ENSMUST00000138044 Vasn protein_coding Interval_159044 chr8 89032278 89033020 + 0 NA exon (ENSMUSG00000031665.7, exon 3 of 4) protein_coding-exon (ENSMUSG00000031665.7, exon 3 of 4) 7914 ENSMUSG00000099078.1 ENSMUSG00000099078 ENSMUST00000183771 Mir8110 miRNA Interval_108414 chr3 126831447 126832612 + 0 NA intron (ENSMUSG00000053819.16, intron 16 of 20) protein_coding-intron (ENSMUSG00000053819.16, intron 2 of 5) 85896 ENSMUSG00000105553.1 ENSMUSG00000105553 ENSMUST00000196636 Gm42514 TEC Interval_16878 chr10 69407028 69407682 + 0 NA intron (ENSMUSG00000069601.14, intron 1 of 1) protein_coding-intron (ENSMUSG00000069601.14, intron 1 of 1) 8359 ENSMUSG00000069601.14 ENSMUSG00000069601 ENSMUST00000183001 Ank3 protein_coding Interval_127860 chr5 108303689 108304297 + 0 NA Intergenic Intergenic -8616 ENSMUSG00000029263.15 ENSMUSG00000029263 ENSMUST00000118910 Pigg protein_coding Interval_174793 chrX 166645205 166646259 + 0 NA Intergenic Intergenic -16293 ENSMUSG00000086860.1 ENSMUSG00000086860 ENSMUST00000135086 Gm1720 lincRNA Interval_76769 chr17 83923503 83923738 + 0 NA Intergenic Intergenic 5683 ENSMUSG00000117442.1 ENSMUSG00000117442 ENSMUST00000234364 1810073O08Rik lincRNA Interval_112271 chr4 39555926 39557029 + 0 NA Intergenic Intergenic 106182 ENSMUSG00000028287.4 ENSMUSG00000028287 ENSMUST00000029955 1700009N14Rik protein_coding Interval_26414 chr11 57724788 57726411 + 0 NA exon (ENSMUSG00000020520.14, exon 3 of 12) protein_coding-exon (ENSMUSG00000020520.14, exon 3 of 12) -15701 ENSMUSG00000077155.1 ENSMUSG00000077155 ENSMUST00000103967 Gm24582 snRNA Interval_41645 chr12 117343198 117343638 + 0 NA Intergenic Intergenic -6406 ENSMUSG00000101930.1 ENSMUSG00000101930 ENSMUST00000186454 Gm5441 antisense Interval_111763 chr4 27965411 27965664 + 0 NA Intergenic Intergenic 31368 ENSMUSG00000080175.2 ENSMUSG00000080175 ENSMUST00000116350 Tpm3-rs2 processed_pseudogene Interval_79070 chr18 24306647 24307271 + 0 NA Intergenic Intergenic -32407 ENSMUSG00000117570.1 ENSMUSG00000117570 ENSMUST00000234938 Gm38410 lincRNA Interval_113198 chr4 49566713 49567019 + 0 NA Intergenic Intergenic 27024 ENSMUSG00000039611.2 ENSMUSG00000039611 ENSMUST00000151542 Tmem246 protein_coding Interval_78216 chr18 10251029 10251260 + 0 NA Intergenic Intergenic -11063 ENSMUSG00000117552.1 ENSMUSG00000117552 ENSMUST00000234693 Gm5686 processed_pseudogene Interval_168231 chr9 78061304 78061946 + 0 NA intron (ENSMUSG00000023333.8, intron 4 of 5) protein_coding-intron (ENSMUSG00000023333.8, intron 4 of 5) -7226 ENSMUSG00000111596.1 ENSMUSG00000111596 ENSMUST00000217247 Gm8058 processed_pseudogene Interval_119436 chr4 137624751 137625589 + 0 NA promoter-TSS (ENSMUSG00000043411.15) protein_coding-promoter-TSS (ENSMUSG00000043411.15) -25131 ENSMUSG00000043411.15 ENSMUSG00000043411 ENSMUST00000125151 Usp48 protein_coding Interval_161468 chr8 120594625 120595085 + 0 NA intron (ENSMUSG00000092329.1, intron 1 of 15) protein_coding-intron (ENSMUSG00000092329.1, intron 1 of 15) 2708 ENSMUSG00000110601.1 ENSMUSG00000110601 ENSMUST00000212445 Gm45834 processed_pseudogene Interval_5089 chr1 84871652 84873170 + 0 NA intron (ENSMUSG00000073633.9, intron 1 of 3) protein_coding-intron (ENSMUSG00000073633.9, intron 1 of 3) 3260 ENSMUSG00000073633.9 ENSMUSG00000073633 ENSMUST00000151737 Fbxo36 protein_coding Interval_64005 chr16 5191716 5192341 + 0 NA Intergenic Intergenic 5737 ENSMUSG00000023143.10 ENSMUSG00000023143 ENSMUST00000144490 Nagpa protein_coding Interval_46646 chr13 67883505 67884890 + 0 NA Intergenic Intergenic 20871 ENSMUSG00000064063.6 ENSMUSG00000064063 ENSMUST00000078471 BC048507 protein_coding Interval_138836 chr6 92422238 92422764 + 0 NA intron (ENSMUSG00000030020.13, intron 3 of 7) protein_coding-intron (ENSMUSG00000030020.13, intron 4 of 8) -139276 ENSMUSG00000098130.1 ENSMUSG00000098130 ENSMUST00000182175 Gm17797 processed_pseudogene Interval_50170 chr14 8501935 8502208 + 0 NA TTS (ENSMUSG00000021747.12) protein_coding-TTS (ENSMUSG00000021747.12) 93154 ENSMUSG00000114533.1 ENSMUSG00000114533 ENSMUST00000224382 Gm8416 processed_pseudogene Interval_83451 chr18 85659020 85659296 + 0 NA Intergenic Intergenic 57567 ENSMUSG00000117854.1 ENSMUSG00000117854 ENSMUST00000237113 Gm7612 processed_pseudogene Interval_124274 chr5 43304811 43305087 + 0 NA Intergenic Intergenic 39792 ENSMUSG00000105326.1 ENSMUSG00000105326 ENSMUST00000199734 6030400A10Rik TEC Interval_171024 chr9 113788669 113789410 + 0 NA intron (ENSMUSG00000033392.16, intron 7 of 10) protein_coding-intron (ENSMUSG00000033392.16, intron 7 of 15) -12741 ENSMUSG00000087992.1 ENSMUSG00000087992 ENSMUST00000157367 Gm25059 snoRNA Interval_10453 chr1 170989714 170990425 + 0 NA Intergenic Intergenic 8125 ENSMUSG00000104340.1 ENSMUSG00000104340 ENSMUST00000194503 Gm10522 lincRNA Interval_53813 chr14 62196429 62196866 + 0 NA Intergenic Intergenic 7705 ENSMUSG00000098096.1 ENSMUSG00000098096 ENSMUST00000183203 Gm26969 lincRNA Interval_80951 chr18 50888655 50889035 + 0 NA Intergenic Intergenic -114259 ENSMUSG00000118088.1 ENSMUSG00000118088 ENSMUST00000236182 Gm3815 processed_pseudogene Interval_132104 chr5 142781431 142783419 + 0 NA intron (ENSMUSG00000039477.16, intron 1 of 24) protein_coding-intron (ENSMUSG00000039477.16, intron 4 of 15) -16403 ENSMUSG00000039477.16 ENSMUSG00000039477 ENSMUST00000198181 Tnrc18 protein_coding Interval_135578 chr6 40706934 40707110 + 0 NA exon (ENSMUSG00000068587.10, exon 48 of 93) protein_coding-exon (ENSMUSG00000068587.10, exon 48 of 93) 64043 ENSMUSG00000068587.10 ENSMUSG00000068587 ENSMUST00000202311 Mgam protein_coding Interval_6252 chr1 104768033 104769668 + 0 NA exon (ENSMUSG00000050840.8, exon 1 of 12) protein_coding-exon (ENSMUSG00000050840.8, exon 1 of 12) 321 ENSMUSG00000050840.8 ENSMUSG00000050840 ENSMUST00000062528 Cdh20 protein_coding Interval_8960 chr1 152746166 152746964 + 0 NA intron (ENSMUSG00000099868.1, intron 1 of 1) protein_coding-intron (ENSMUSG00000026482.13, intron 1 of 17) -3986 ENSMUSG00000055547.4 ENSMUSG00000055547 ENSMUST00000068875 Apobec4 protein_coding Interval_5288 chr1 87257503 87259328 + 0 NA Intergenic Intergenic 6759 ENSMUSG00000089821.1 ENSMUSG00000089821 ENSMUST00000138844 Efhd1os antisense Interval_46493 chr13 66586083 66587058 + 0 NA TTS (ENSMUSG00000098452.1) miRNA-TTS (ENSMUSG00000098452.1) 346 ENSMUSG00000098452.1 ENSMUSG00000098452 ENSMUST00000183599 Gm27501 miRNA Interval_28979 chr11 79690063 79690925 + 0 NA exon (ENSMUSG00000017639.13, exon 12 of 15) protein_coding-exon (ENSMUSG00000017639.13, exon 12 of 15) -14136 ENSMUSG00000084969.1 ENSMUSG00000084969 ENSMUST00000137738 Gm11205 lincRNA Interval_101191 chr2 179233944 179234246 + 0 NA Intergenic Intergenic -6395 ENSMUSG00000081481.1 ENSMUSG00000081481 ENSMUST00000118528 Gm14293 processed_pseudogene Interval_147084 chr7 62335106 62335874 + 0 NA Intergenic Intergenic -11079 ENSMUSG00000033585.5 ENSMUSG00000033585 ENSMUST00000038775 Ndn protein_coding Interval_24373 chr11 32727112 32727330 + 0 NA intron (ENSMUSG00000020271.17, intron 5 of 12) protein_coding-intron (ENSMUSG00000020271.17, intron 6 of 13) 48418 ENSMUSG00000098054.1 ENSMUSG00000098054 ENSMUST00000182196 Gm8192 processed_pseudogene Interval_10442 chr1 170892461 170892908 + 0 NA Intergenic Intergenic 7619 ENSMUSG00000096968.1 ENSMUSG00000096968 ENSMUST00000180542 Gm26620 protein_coding Interval_47337 chr13 81656224 81658266 + 0 NA promoter-TSS (ENSMUSG00000035840.7) protein_coding-promoter-TSS (ENSMUSG00000035840.7) -547 ENSMUSG00000035840.7 ENSMUSG00000035840 ENSMUST00000224420 Lysmd3 protein_coding Interval_87317 chr19 47624908 47625695 + 0 NA TTS (ENSMUSG00000025060.15) protein_coding-TTS (ENSMUSG00000025060.15) -2347 ENSMUSG00000025060.15 ENSMUSG00000025060 ENSMUST00000147841 Slk protein_coding Interval_158382 chr8 83259335 83261156 + 0 NA intron (ENSMUSG00000031709.15, intron 1 of 6) protein_coding-intron (ENSMUSG00000031709.15, intron 12 of 17) 986 ENSMUSG00000031709.15 ENSMUSG00000031709 ENSMUST00000142673 Tbc1d9 protein_coding Interval_170309 chr9 106840392 106841539 + 0 NA intron (ENSMUSG00000040325.16, intron 7 of 22) protein_coding-intron (ENSMUSG00000040325.16, intron 7 of 22) -9921 ENSMUSG00000040325.16 ENSMUSG00000040325 ENSMUST00000163657 Dcaf1 protein_coding Interval_136215 chr6 52103909 52104350 + 0 NA intron (ENSMUSG00000085412.7, intron 1 of 2) lincRNA-intron (ENSMUSG00000085412.7, intron 1 of 2) 1135 ENSMUSG00000085412.7 ENSMUSG00000085412 ENSMUST00000155758 Halr1 lincRNA Interval_67723 chr16 56343682 56344083 + 0 NA Intergenic Intergenic -6504 ENSMUSG00000116998.1 ENSMUSG00000116998 ENSMUST00000231232 Gm21050 processed_pseudogene Interval_86130 chr19 36925541 36926756 + 0 NA promoter-TSS (ENSMUSG00000040565.8) protein_coding-promoter-TSS (ENSMUSG00000040565.8) -6549 ENSMUSG00000047632.11 ENSMUSG00000047632 ENSMUST00000057337 Fgfbp3 protein_coding Interval_64815 chr16 16111418 16112330 + 0 NA intron (ENSMUSG00000041974.10, intron 5 of 16) protein_coding-intron (ENSMUSG00000041974.10, intron 5 of 19) 12276 ENSMUSG00000116385.1 ENSMUSG00000116385 ENSMUST00000230117 Gm18334 processed_pseudogene Interval_166066 chr9 56194929 56195388 + 0 NA Intergenic Intergenic 28613 ENSMUSG00000076281.1 ENSMUSG00000076281 ENSMUST00000102326 Gm24270 miRNA Interval_27593 chr11 68923122 68923446 + 0 NA intron (ENSMUSG00000032921.13, intron 2 of 4) protein_coding-intron (ENSMUSG00000032921.13, intron 2 of 4) 3532 ENSMUSG00000032921.13 ENSMUSG00000032921 ENSMUST00000125134 Odf4 protein_coding Interval_117512 chr4 124302550 124302762 + 0 NA TTS (ENSMUSG00000086955.1) lincRNA-TTS (ENSMUSG00000086955.1) -2808 ENSMUSG00000086087.1 ENSMUSG00000086087 ENSMUST00000139012 Gm12916 lincRNA Interval_147392 chr7 66409188 66409767 + 0 NA intron (ENSMUSG00000015134.15, intron 6 of 6) protein_coding-intron (ENSMUSG00000015134.15, intron 6 of 12) 9758 ENSMUSG00000015134.15 ENSMUSG00000015134 ENSMUST00000174215 Aldh1a3 protein_coding Interval_21292 chr10 127694416 127694939 + 0 NA exon (ENSMUSG00000040195.11, exon 7 of 7) protein_coding-exon (ENSMUSG00000040195.11, exon 7 of 7) -17953 ENSMUSG00000087163.1 ENSMUSG00000087163 ENSMUST00000155550 Gm16230 antisense Interval_155942 chr8 41173432 41175741 + 0 NA Intergenic Intergenic 40567 ENSMUSG00000031594.9 ENSMUSG00000031594 ENSMUST00000134510 Fgl1 protein_coding Interval_69821 chr16 96980067 96980669 + 0 NA intron (ENSMUSG00000050272.10, intron 3 of 32) protein_coding-intron (ENSMUSG00000050272.10, intron 3 of 32) 61636 ENSMUSG00000117324.1 ENSMUSG00000117324 ENSMUST00000232718 Gm32432 antisense Interval_9174 chr1 154725772 154727227 + 0 NA promoter-TSS (ENSMUSG00000004110.17) protein_coding-promoter-TSS (ENSMUSG00000004110.17) 90442 ENSMUSG00000004110.17 ENSMUSG00000004110 ENSMUST00000186256 Cacna1e protein_coding Interval_126303 chr5 86343716 86344513 + 0 NA intron (ENSMUSG00000061259.11, intron 1 of 9) protein_coding-intron (ENSMUSG00000061259.11, intron 1 of 9) -16378 ENSMUSG00000061259.11 ENSMUSG00000061259 ENSMUST00000031175 Tmprss11d protein_coding Interval_130406 chr5 127359558 127359757 + 0 NA exon (ENSMUSG00000034324.16, exon 2 of 9) protein_coding-exon (ENSMUSG00000034324.16, exon 2 of 9) 50640 ENSMUSG00000104971.1 ENSMUSG00000104971 ENSMUST00000196548 9430087B13Rik TEC Interval_61294 chr15 80639008 80639265 + 0 NA TTS (ENSMUSG00000042351.9) protein_coding-TTS (ENSMUSG00000042351.9) -1322 ENSMUSG00000116433.1 ENSMUSG00000116433 ENSMUST00000230939 Gm49553 TEC Interval_37650 chr12 70824579 70826352 + 0 NA promoter-TSS (ENSMUSG00000048285.9) protein_coding-promoter-TSS (ENSMUSG00000048285.9) -120 ENSMUSG00000113900.1 ENSMUSG00000113900 ENSMUST00000222338 Gm40437 lincRNA Interval_37005 chr12 56271375 56271862 + 0 NA Intergenic Intergenic -4414 ENSMUSG00000088389.1 ENSMUSG00000088389 ENSMUST00000157764 Gm24685 misc_RNA Interval_46848 chr13 72391701 72393153 + 0 NA Intergenic Intergenic -20780 ENSMUSG00000113172.1 ENSMUSG00000113172 ENSMUST00000222760 Gm47836 TEC Interval_155667 chr8 35943379 35944896 + 0 NA Intergenic Intergenic 33441 ENSMUSG00000080592.1 ENSMUSG00000080592 ENSMUST00000116942 Gm22030 miRNA Interval_29902 chr11 87629663 87630393 + 0 NA intron (ENSMUSG00000070345.3, intron 2 of 5) protein_coding-intron (ENSMUSG00000070345.3, intron 2 of 5) 12864 ENSMUSG00000070345.3 ENSMUSG00000070345 ENSMUST00000093956 Hsf5 protein_coding Interval_142662 chr6 144897741 144897953 + 0 NA Intergenic Intergenic -94215 ENSMUSG00000087850.1 ENSMUSG00000087850 ENSMUST00000157225 Gm22792 snoRNA Interval_52177 chr14 38276813 38277074 + 0 NA Intergenic Intergenic -40961 ENSMUSG00000114219.1 ENSMUSG00000114219 ENSMUST00000225614 Gm31456 lincRNA Interval_12266 chr1 191259214 191259421 + 0 NA Intergenic Intergenic -7861 ENSMUSG00000103174.1 ENSMUSG00000103174 ENSMUST00000192965 Gm37168 lincRNA Interval_102564 chr3 27817978 27818181 + 0 NA Intergenic Intergenic -50034 ENSMUSG00000088772.1 ENSMUSG00000088772 ENSMUST00000158147 Gm26040 snoRNA Interval_152704 chr7 136617602 136618045 + 0 NA Intergenic Intergenic -39386 ENSMUSG00000109894.1 ENSMUSG00000109894 ENSMUST00000210286 Gm5904 processed_pseudogene Interval_36609 chr12 51401879 51402848 + 0 NA TTS (ENSMUSG00000020952.10) protein_coding-TTS (ENSMUSG00000020952.10) 24782 ENSMUSG00000020952.10 ENSMUSG00000020952 ENSMUST00000218138 Scfd1 protein_coding Interval_143102 chr6 149356427 149357601 + 0 NA Intergenic Intergenic -3188 ENSMUSG00000084083.1 ENSMUSG00000084083 ENSMUST00000121073 Gm15782 processed_pseudogene Interval_105092 chr3 81101269 81102944 + 0 NA intron (ENSMUSG00000028019.9, intron 1 of 5) protein_coding-intron (ENSMUSG00000028019.9, intron 1 of 5) -61669 ENSMUSG00000085106.1 ENSMUSG00000085106 ENSMUST00000146657 Gm16000 antisense Interval_129262 chr5 118509312 118511612 + 0 NA Intergenic Intergenic 23495 ENSMUSG00000082365.2 ENSMUSG00000082365 ENSMUST00000119191 Gm15754 transcribed_processed_pseudogene Interval_4889 chr1 81591597 81591825 + 0 NA Intergenic Intergenic -34228 ENSMUSG00000101986.1 ENSMUSG00000101986 ENSMUST00000191337 Gm6198 processed_pseudogene Interval_64493 chr16 12631824 12633202 + 0 NA intron (ENSMUSG00000116520.1, intron 11 of 11) lincRNA-intron (ENSMUSG00000116520.1, intron 11 of 11) -71855 ENSMUSG00000116197.1 ENSMUSG00000116197 ENSMUST00000230690 Gm38619 lincRNA Interval_19684 chr10 107932413 107932714 + 0 NA Intergenic Intergenic -14082 ENSMUSG00000112910.1 ENSMUSG00000112910 ENSMUST00000219670 Gm29685 lincRNA Interval_167304 chr9 67179418 67180715 + 0 NA intron (ENSMUSG00000111556.1, intron 2 of 2) lincRNA-intron (ENSMUSG00000111556.1, intron 2 of 2) 46505 ENSMUSG00000111556.1 ENSMUSG00000111556 ENSMUST00000215724 Gm19299 lincRNA Interval_18142 chr10 82969316 82969750 + 0 NA Intergenic Intergenic 15189 ENSMUSG00000071151.3 ENSMUSG00000071151 ENSMUST00000095396 Gm4799 processed_pseudogene Interval_168 JH584304.1 72890 73301 + 0 NA NA NA NA NA Interval_78587 chr18 14943188 14943430 + 0 NA Intergenic Intergenic -19198 ENSMUSG00000117436.1 ENSMUSG00000117436 ENSMUST00000234412 Gm9474 processed_pseudogene Interval_137 GL456378.1 27059 28418 + 0 NA NA NA NA NA Interval_88004 chr19 57752068 57752944 + 0 NA intron (ENSMUSG00000054843.9, intron 22 of 28) protein_coding-intron (ENSMUSG00000054843.9, intron 22 of 28) 141472 ENSMUSG00000054843.9 ENSMUSG00000054843 ENSMUST00000077282 Atrnl1 protein_coding Interval_164765 chr9 41474214 41475217 + 0 NA promoter-TSS (ENSMUSG00000074415.14) processed_transcript-promoter-TSS (ENSMUSG00000074415.14) -140 ENSMUSG00000111462.2 ENSMUSG00000111462 ENSMUST00000212079 Gm49317 lincRNA Interval_73601 chr17 40962908 40963857 + 0 NA Intergenic Intergenic 8194 ENSMUSG00000023921.9 ENSMUSG00000023921 ENSMUST00000233222 Mmut protein_coding Interval_49504 chr13 112486095 112487144 + 0 NA intron (ENSMUSG00000021756.12, intron 3 of 13) protein_coding-intron (ENSMUSG00000021756.12, intron 3 of 14) 11573 ENSMUSG00000021756.12 ENSMUSG00000021756 ENSMUST00000184949 Il6st protein_coding Interval_99094 chr2 157145417 157145657 + 0 NA TTS (ENSMUSG00000027641.13) protein_coding-TTS (ENSMUSG00000027641.13) -23283 ENSMUSG00000084113.1 ENSMUSG00000084113 ENSMUST00000121195 Gm14277 processed_pseudogene Interval_6242 chr1 104202086 104202509 + 0 NA Intergenic Intergenic -109424 ENSMUSG00000101297.1 ENSMUSG00000101297 ENSMUST00000187501 Gm18447 processed_pseudogene Interval_172549 chrX 36561291 36561916 + 0 NA Intergenic Intergenic -36603 ENSMUSG00000006373.10 ENSMUSG00000006373 ENSMUST00000073339 Pgrmc1 protein_coding Interval_13717 chr10 21353396 21354278 + 0 NA promoter-TSS (ENSMUSG00000019977.16) protein_coding-promoter-TSS (ENSMUSG00000019977.16) -11780 ENSMUSG00000112654.1 ENSMUSG00000112654 ENSMUST00000218108 4930455C13Rik antisense Interval_63158 chr15 99436731 99436998 + 0 NA intron (ENSMUSG00000023009.14, intron 1 of 12) protein_coding-intron (ENSMUSG00000023009.14, intron 1 of 12) 9163 ENSMUSG00000089968.1 ENSMUSG00000089968 ENSMUST00000159738 Nckap5los antisense Interval_38310 chr12 77048109 77048890 + 0 NA Intergenic Intergenic -6298 ENSMUSG00000112030.1 ENSMUSG00000112030 ENSMUST00000219319 Gm35189 lincRNA Interval_114862 chr4 86504752 86505082 + 0 NA intron (ENSMUSG00000028492.13, intron 1 of 2) protein_coding-intron (ENSMUSG00000028492.13, intron 1 of 3) -4235 ENSMUSG00000077597.1 ENSMUSG00000077597 ENSMUST00000104409 Gm26017 snRNA Interval_49434 chr13 111954348 111954853 + 0 NA Intergenic Intergenic -36866 ENSMUSG00000086402.1 ENSMUSG00000086402 ENSMUST00000142621 Gm15322 lincRNA Interval_133417 chr6 4910161 4911141 + 0 NA intron (ENSMUSG00000032827.15, intron 1 of 17) protein_coding-intron (ENSMUSG00000032827.15, intron 2 of 15) 5235 ENSMUSG00000032827.15 ENSMUSG00000032827 ENSMUST00000065842 Ppp1r9a protein_coding Interval_118202 chr4 129502865 129503687 + 0 NA intron (ENSMUSG00000086336.1, intron 1 of 2) antisense-intron (ENSMUSG00000086336.1, intron 1 of 2) 6470 ENSMUSG00000086336.1 ENSMUSG00000086336 ENSMUST00000145488 Gm12979 antisense Interval_30035 chr11 88820762 88821542 + 0 NA Intergenic Intergenic 20388 ENSMUSG00000018428.15 ENSMUSG00000018428 ENSMUST00000153787 Akap1 protein_coding Interval_27375 chr11 67058470 67058942 + 0 NA intron (ENSMUSG00000069844.12, intron 1 of 2) protein_coding-intron (ENSMUSG00000069844.12, intron 5 of 5) 379 ENSMUSG00000069844.12 ENSMUSG00000069844 ENSMUST00000137779 Sco1 protein_coding Interval_167104 chr9 65283444 65283705 + 0 NA Intergenic Intergenic -10758 ENSMUSG00000015357.10 ENSMUSG00000015357 ENSMUST00000147279 Clpx protein_coding Interval_32261 chr11 106580111 106580320 + 0 NA intron (ENSMUSG00000040548.16, intron 1 of 2) protein_coding-intron (ENSMUSG00000040548.16, intron 1 of 11) -13105 ENSMUSG00000040548.16 ENSMUSG00000040548 ENSMUST00000153870 Tex2 protein_coding Interval_17187 chr10 74527563 74528144 + 0 NA intron (ENSMUSG00000052613.16, intron 24 of 34) protein_coding-intron (ENSMUSG00000052613.16, intron 23 of 30) -292869 ENSMUSG00000112686.1 ENSMUSG00000112686 ENSMUST00000218638 Gm7034 processed_pseudogene Interval_108303 chr3 123505806 123507195 + 0 NA TTS (ENSMUSG00000027978.9) protein_coding-TTS (ENSMUSG00000027978.9) 1566 ENSMUSG00000092730.1 ENSMUSG00000092730 ENSMUST00000174989 Snora24 snoRNA Interval_31550 chr11 101315640 101316849 + 0 NA promoter-TSS (ENSMUSG00000078652.9) protein_coding-promoter-TSS (ENSMUSG00000078652.9) -733 ENSMUSG00000078652.9 ENSMUSG00000078652 ENSMUST00000131170 Psme3 protein_coding Interval_87792 chr19 55902533 55903772 + 0 NA intron (ENSMUSG00000024985.20, intron 1 of 6) protein_coding-intron (ENSMUSG00000024985.20, intron 4 of 11) 61480 ENSMUSG00000099746.1 ENSMUSG00000099746 ENSMUST00000190974 Ppnr sense_intronic Interval_147703 chr7 72243509 72243723 + 0 NA intron (ENSMUSG00000032776.9, intron 4 of 22) protein_coding-intron (ENSMUSG00000032776.9, intron 4 of 22) -14256 ENSMUSG00000032776.9 ENSMUSG00000032776 ENSMUST00000206755 Mctp2 protein_coding Interval_116969 chr4 118534401 118534808 + 0 NA Intergenic Intergenic 7605 ENSMUSG00000028536.12 ENSMUSG00000028536 ENSMUST00000030261 2610528J11Rik protein_coding Interval_13970 chr10 25184918 25186541 + 0 NA intron (ENSMUSG00000039166.16, intron 2 of 2) protein_coding-intron (ENSMUSG00000039166.16, intron 7 of 7) 34962 ENSMUSG00000039166.16 ENSMUSG00000039166 ENSMUST00000176231 Akap7 protein_coding Interval_6850 chr1 120089025 120089657 + 0 NA Intergenic Intergenic -15267 ENSMUSG00000050777.7 ENSMUSG00000050777 ENSMUST00000056089 Tmem37 protein_coding Interval_70427 chr17 10134654 10135284 + 0 NA Intergenic Intergenic 184392 ENSMUSG00000062078.15 ENSMUSG00000062078 ENSMUST00000233684 Qk protein_coding Interval_142844 chr6 146391162 146391460 + 0 NA exon (ENSMUSG00000030287.15, exon 12 of 57) protein_coding-exon (ENSMUSG00000030287.15, exon 12 of 57) 14894 ENSMUSG00000107743.1 ENSMUSG00000107743 ENSMUST00000204247 Gm44087 TEC Interval_78360 chr18 12174191 12174549 + 0 NA intron (ENSMUSG00000024410.15, intron 2 of 6) protein_coding-intron (ENSMUSG00000024410.15, intron 3 of 19) 10932 ENSMUSG00000084748.1 ENSMUSG00000084748 ENSMUST00000122799 Gm25289 snRNA Interval_133301 chr5 151374596 151375358 + 0 NA intron (ENSMUSG00000054622.4, intron 1 of 1) processed_transcript-intron (ENSMUSG00000097321.5, intron 1 of 3) -25167 ENSMUSG00000097321.5 ENSMUSG00000097321 ENSMUST00000201853 1700028E10Rik processed_transcript Interval_23907 chr11 28167178 28167563 + 0 NA Intergenic Intergenic 121335 ENSMUSG00000083201.1 ENSMUSG00000083201 ENSMUST00000119821 Gm12080 processed_pseudogene Interval_117615 chr4 125065579 125067228 + 0 NA promoter-TSS (ENSMUSG00000042707.6) protein_coding-promoter-TSS (ENSMUSG00000042707.6) -299 ENSMUSG00000050213.6 ENSMUSG00000050213 ENSMUST00000145733 Snip1 protein_coding Interval_4506 chr1 74677037 74677406 + 0 NA intron (ENSMUSG00000033257.14, intron 2 of 4) protein_coding-intron (ENSMUSG00000033257.14, intron 2 of 19) -12202 ENSMUSG00000033257.14 ENSMUSG00000033257 ENSMUST00000143790 Ttll4 protein_coding Interval_140601 chr6 119996209 119996640 + 0 NA intron (ENSMUSG00000045962.16, intron 2 of 25) protein_coding-intron (ENSMUSG00000045962.16, intron 2 of 27) -9574 ENSMUSG00000089936.1 ENSMUSG00000089936 ENSMUST00000160032 Gm16199 processed_pseudogene Interval_10425 chr1 170759740 170760471 + 0 NA intron (ENSMUSG00000026663.6, intron 14 of 15) protein_coding-intron (ENSMUSG00000026663.6, intron 14 of 15) -8282 ENSMUSG00000096310.1 ENSMUSG00000096310 ENSMUST00000180190 Gm23523 snRNA Interval_152403 chr7 132800813 132801265 + 0 NA intron (ENSMUSG00000030956.15, intron 1 of 3) protein_coding-intron (ENSMUSG00000030956.15, intron 1 of 3) 1711 ENSMUSG00000030956.15 ENSMUSG00000030956 ENSMUST00000148303 Fam53b protein_coding Interval_105451 chr3 86700745 86701601 + 0 NA intron (ENSMUSG00000028080.16, intron 8 of 17) protein_coding-intron (ENSMUSG00000028080.16, intron 47 of 56) -29005 ENSMUSG00000094392.1 ENSMUSG00000094392 ENSMUST00000119949 Gm3788 processed_pseudogene Interval_123307 chr5 31283371 31283574 + 0 NA intron (ENSMUSG00000038564.11, intron 8 of 15) protein_coding-intron (ENSMUSG00000038564.11, intron 8 of 47) -2032 ENSMUSG00000038564.11 ENSMUSG00000038564 ENSMUST00000201809 Ift172 protein_coding Interval_84043 chr19 6924590 6924917 + 0 NA TTS (ENSMUSG00000024957.9) protein_coding-TTS (ENSMUSG00000024957.9) 136 ENSMUSG00000050623.5 ENSMUSG00000050623 ENSMUST00000236981 Catsperz protein_coding Interval_124980 chr5 63028568 63028905 + 0 NA Intergenic Intergenic 217062 ENSMUSG00000090326.2 ENSMUSG00000090326 ENSMUST00000170704 Dthd1 protein_coding Interval_190 JH792828.1 275098 276222 + 0 NA NA NA NA NA Interval_98429 chr2 152309148 152309782 + 0 NA intron (ENSMUSG00000027465.13, intron 1 of 1) protein_coding-intron (ENSMUSG00000027465.13, intron 5 of 7) 14033 ENSMUSG00000027466.15 ENSMUSG00000027466 ENSMUST00000129590 Rbck1 protein_coding Interval_116910 chr4 118167209 118168181 + 0 NA intron (ENSMUSG00000033326.15, intron 5 of 21) protein_coding-intron (ENSMUSG00000033326.15, intron 5 of 18) 3617 ENSMUSG00000088303.1 ENSMUSG00000088303 ENSMUST00000157678 Gm23382 snoRNA Interval_156063 chr8 43295698 43296513 + 0 NA exon (ENSMUSG00000051176.6, exon 4 of 4) protein_coding-exon (ENSMUSG00000051176.6, exon 4 of 4) 10831 ENSMUSG00000051176.6 ENSMUSG00000051176 ENSMUST00000082120 Zfp42 protein_coding Interval_173090 chrX 71361705 71362025 + 0 NA Intergenic Intergenic -7947 ENSMUSG00000015214.14 ENSMUSG00000015214 ENSMUST00000130179 Mtmr1 protein_coding Interval_112810 chr4 45202246 45204084 + 0 NA promoter-TSS (ENSMUSG00000035615.12) protein_coding-promoter-TSS (ENSMUSG00000035615.12) 18290 ENSMUSG00000035615.12 ENSMUSG00000035615 ENSMUST00000107804 Frmpd1 protein_coding Interval_68682 chr16 84709918 84710531 + 0 NA intron (ENSMUSG00000097418.7, intron 1 of 1) lincRNA-intron (ENSMUSG00000097418.7, intron 1 of 1) -3916 ENSMUSG00000065397.1 ENSMUSG00000065397 ENSMUST00000083463 Mir155 miRNA Interval_51941 chr14 34136738 34136953 + 0 NA Intergenic Intergenic -2603 ENSMUSG00000115101.1 ENSMUSG00000115101 ENSMUST00000227054 Gm7778 processed_pseudogene Interval_160940 chr8 115705739 115708440 + 0 NA promoter-TSS (ENSMUSG00000055435.6) protein_coding-promoter-TSS (ENSMUSG00000055435.6) 705 ENSMUSG00000055435.6 ENSMUSG00000055435 ENSMUST00000109104 Maf protein_coding Interval_133870 chr6 13845643 13846869 + 0 NA Intergenic Intergenic -6761 ENSMUSG00000048216.13 ENSMUSG00000048216 ENSMUST00000127072 Gpr85 protein_coding Interval_149818 chr7 101807723 101807966 + 0 NA Intergenic Intergenic -12902 ENSMUSG00000007946.11 ENSMUSG00000007946 ENSMUST00000209878 Phox2a protein_coding Interval_98585 chr2 153397580 153398533 + 0 NA intron (ENSMUSG00000042548.14, intron 11 of 11) protein_coding-intron (ENSMUSG00000042548.14, intron 12 of 12) -15793 ENSMUSG00000082283.1 ENSMUSG00000082283 ENSMUST00000119815 Gm14472 processed_pseudogene Interval_152349 chr7 132199445 132199717 + 0 NA intron (ENSMUSG00000030849.18, intron 2 of 6) protein_coding-intron (ENSMUSG00000030849.18, intron 2 of 6) 45410 ENSMUSG00000086814.1 ENSMUSG00000086814 ENSMUST00000152302 Gm15677 antisense Interval_97803 chr2 144176752 144177969 + 0 NA intron (ENSMUSG00000074758.10, intron 1 of 2) lincRNA-intron (ENSMUSG00000074758.10, intron 2 of 3) 13691 ENSMUSG00000074758.10 ENSMUSG00000074758 ENSMUST00000209482 Gm5535 lincRNA Interval_47650 chr13 90775879 90776300 + 0 NA Intergenic Intergenic 1994 ENSMUSG00000114265.1 ENSMUSG00000114265 ENSMUST00000225134 Gm47521 processed_pseudogene Interval_126153 chr5 79814473 79814719 + 0 NA Intergenic Intergenic -64067 ENSMUSG00000084435.1 ENSMUSG00000084435 ENSMUST00000122486 Gm23429 snRNA Interval_104190 chr3 60112442 60112859 + 0 NA Intergenic Intergenic 15097 ENSMUSG00000084647.1 ENSMUSG00000084647 ENSMUST00000122698 Gm24382 snRNA Interval_99878 chr2 165472645 165473914 + 0 NA promoter-TSS (ENSMUSG00000018459.15) protein_coding-promoter-TSS (ENSMUSG00000018459.15) -80 ENSMUSG00000018459.15 ENSMUSG00000018459 ENSMUST00000147107 Slc13a3 protein_coding Interval_107216 chr3 104680563 104681948 + 0 NA Intergenic Intergenic -11245 ENSMUSG00000101641.1 ENSMUSG00000101641 ENSMUST00000191526 Gm29560 TEC Interval_55004 chr14 76810636 76811479 + 0 NA Intergenic Intergenic -21764 ENSMUSG00000115353.1 ENSMUSG00000115353 ENSMUST00000227572 Gm48968 lincRNA Interval_152316 chr7 131696844 131697344 + 0 NA intron (ENSMUSG00000030849.18, intron 2 of 6) protein_coding-intron (ENSMUSG00000030849.18, intron 2 of 6) -22212 ENSMUSG00000109066.1 ENSMUSG00000109066 ENSMUST00000207218 Gm4585 processed_pseudogene Interval_165363 chr9 46621730 46622327 + 0 NA Intergenic Intergenic 8191 ENSMUSG00000064673.1 ENSMUSG00000064673 ENSMUST00000082739 Gm22805 snRNA Interval_28908 chr11 79200694 79202512 + 0 NA Intergenic Intergenic -11193 ENSMUSG00000081000.1 ENSMUSG00000081000 ENSMUST00000121698 Gm11200 processed_pseudogene Interval_31084 chr11 98042081 98042515 + 0 NA intron (ENSMUSG00000017400.10, intron 1 of 6) protein_coding-intron (ENSMUSG00000017400.10, intron 4 of 10) 1244 ENSMUSG00000017400.10 ENSMUSG00000017400 ENSMUST00000131519 Stac2 protein_coding Interval_159582 chr8 95608619 95611128 + 0 NA intron (ENSMUSG00000110447.1, intron 2 of 3) lincRNA-intron (ENSMUSG00000110447.1, intron 3 of 4) 8354 ENSMUSG00000110447.1 ENSMUSG00000110447 ENSMUST00000213069 Gm31518 lincRNA Interval_110515 chr4 3443342 3443878 + 0 NA Intergenic Intergenic -12092 ENSMUSG00000081711.1 ENSMUSG00000081711 ENSMUST00000120165 Gm11785 processed_pseudogene Interval_147808 chr7 73669858 73670052 + 0 NA TTS (ENSMUSG00000108550.1) lincRNA-TTS (ENSMUSG00000108550.1) 2435 ENSMUSG00000108550.1 ENSMUSG00000108550 ENSMUST00000205943 Gm44736 lincRNA Interval_159163 chr8 91304336 91305007 + 0 NA intron (ENSMUSG00000033282.14, intron 4 of 25) protein_coding-intron (ENSMUSG00000033282.14, intron 4 of 25) 3084 ENSMUSG00000109956.1 ENSMUSG00000109956 ENSMUST00000209619 Gm45428 TEC Interval_150931 chr7 116411770 116412021 + 0 NA intron (ENSMUSG00000030660.9, intron 3 of 33) protein_coding-intron (ENSMUSG00000030660.9, intron 2 of 32) -1092 ENSMUSG00000108359.1 ENSMUSG00000108359 ENSMUST00000205973 C430039J01Rik TEC Interval_138868 chr6 92759489 92760334 + 0 NA Intergenic Intergenic -67721 ENSMUSG00000048636.7 ENSMUSG00000048636 ENSMUST00000133858 A730049H05Rik protein_coding Interval_58572 chr15 36241484 36242554 + 0 NA exon (ENSMUSG00000022280.9, exon 10 of 10) protein_coding-exon (ENSMUSG00000022280.9, exon 10 of 10) -1855 ENSMUSG00000098457.1 ENSMUSG00000098457 ENSMUST00000185150 Mir8097 miRNA Interval_76437 chr17 80193260 80193602 + 0 NA Intergenic Intergenic 2973 ENSMUSG00000088453.1 ENSMUSG00000088453 ENSMUST00000157828 Gm25706 misc_RNA Interval_14726 chr10 39398879 39399747 + 0 NA intron (ENSMUSG00000019843.14, intron 2 of 12) protein_coding-intron (ENSMUSG00000019843.14, intron 2 of 13) -20696 ENSMUSG00000019843.14 ENSMUSG00000019843 ENSMUST00000123205 Fyn protein_coding Interval_1759 chr1 33590757 33591202 + 0 NA intron (ENSMUSG00000026134.11, intron 7 of 13) protein_coding-intron (ENSMUSG00000026134.11, intron 7 of 13) 25853 ENSMUSG00000102714.1 ENSMUSG00000102714 ENSMUST00000192891 Gm37618 TEC Interval_141537 chr6 128994393 128995000 + 0 NA intron (ENSMUSG00000087150.7, intron 1 of 2) transcribed_unprocessed_pseudogene-intron (ENSMUSG00000087150.7, intron 1 of 6) 1744 ENSMUSG00000087150.7 ENSMUSG00000087150 ENSMUST00000122939 BC064078 transcribed_unprocessed_pseudogene Interval_2510 chr1 39871635 39871890 + 0 NA Intergenic Intergenic -24432 ENSMUSG00000101634.6 ENSMUSG00000101634 ENSMUST00000186683 1700066B17Rik lincRNA Interval_82513 chr18 74808516 74808749 + 0 NA Intergenic Intergenic 15249 ENSMUSG00000036880.10 ENSMUSG00000036880 ENSMUST00000237306 Acaa2 protein_coding Interval_171808 chr9 121312090 121313801 + 0 NA intron (ENSMUSG00000032536.12, intron 1 of 1) protein_coding-intron (ENSMUSG00000032536.12, intron 1 of 1) -6440 ENSMUSG00000110751.1 ENSMUSG00000110751 ENSMUST00000214451 C230053D17Rik TEC Interval_35051 chr12 16870073 16871275 + 0 NA Intergenic Intergenic -19793 ENSMUSG00000114018.1 ENSMUSG00000114018 ENSMUST00000221201 Gm36495 lincRNA Interval_78726 chr18 19453048 19453540 + 0 NA Intergenic Intergenic -81496 ENSMUSG00000117636.1 ENSMUSG00000117636 ENSMUST00000234485 Gm38432 processed_pseudogene Interval_153381 chr7 144232232 144232496 + 0 NA intron (ENSMUSG00000037541.22, intron 13 of 17) protein_coding-intron (ENSMUSG00000037541.22, intron 4 of 15) -6361 ENSMUSG00000037541.22 ENSMUSG00000037541 ENSMUST00000136979 Shank2 protein_coding Interval_146092 chr7 43833101 43833764 + 0 NA Intergenic Intergenic -8539 ENSMUSG00000074155.2 ENSMUSG00000074155 ENSMUST00000048444 Klk5 protein_coding Interval_147356 chr7 66067670 66068233 + 0 NA promoter-TSS (ENSMUSG00000030512.13) protein_coding-promoter-TSS (ENSMUSG00000030512.13) 7348 ENSMUSG00000030512.13 ENSMUSG00000030512 ENSMUST00000147702 Snrpa1 protein_coding Interval_135243 chr6 37787576 37789570 + 0 NA Intergenic Intergenic -17513 ENSMUSG00000080242.5 ENSMUSG00000080242 ENSMUST00000122373 Atp6v0c-ps2 processed_pseudogene Interval_128100 chr5 110867078 110868152 + 0 NA TTS (ENSMUSG00000029521.7) protein_coding-TTS (ENSMUSG00000029521.7) -8988 ENSMUSG00000104602.1 ENSMUSG00000104602 ENSMUST00000198807 Gm42779 processed_pseudogene Interval_115070 chr4 89225931 89226371 + 0 NA Intergenic Intergenic 9287 ENSMUSG00000107513.1 ENSMUSG00000107513 ENSMUST00000203590 Tgif2-ps1 processed_pseudogene Interval_46110 chr13 61810232 61810493 + 0 NA intron (ENSMUSG00000113626.1, intron 1 of 2) transcribed_processed_pseudogene-intron (ENSMUSG00000113626.1, intron 1 of 1) 6096 ENSMUSG00000113626.1 ENSMUSG00000113626 ENSMUST00000220769 Gm7240 transcribed_processed_pseudogene Interval_6703 chr1 118875576 118876087 + 0 NA intron (ENSMUSG00000048402.14, intron 2 of 7) protein_coding-intron (ENSMUSG00000048402.14, intron 3 of 13) 65695 ENSMUSG00000100040.1 ENSMUSG00000100040 ENSMUST00000190981 Gm28467 processed_pseudogene Interval_52207 chr14 40546196 40548213 + 0 NA Intergenic Intergenic -10034 ENSMUSG00000098169.1 ENSMUSG00000098169 ENSMUST00000182253 Gm5205 processed_pseudogene Interval_122343 chr5 21548822 21549091 + 0 NA intron (ENSMUSG00000048520.16, intron 11 of 18) protein_coding-intron (ENSMUSG00000039883.5, intron 1 of 3) 5397 ENSMUSG00000039883.5 ENSMUSG00000039883 ENSMUST00000035651 Lrrc17 protein_coding Interval_88171 chr19 60252222 60252438 + 0 NA Intergenic Intergenic 10477 ENSMUSG00000099678.1 ENSMUSG00000099678 ENSMUST00000186261 Gm28351 lincRNA Interval_3503 chr1 59110738 59111923 + 0 NA intron (ENSMUSG00000038079.14, intron 5 of 8) protein_coding-intron (ENSMUSG00000038079.14, intron 5 of 12) -8503 ENSMUSG00000097573.2 ENSMUSG00000097573 ENSMUST00000189096 G730003C15Rik antisense Interval_167289 chr9 67069853 67070283 + 0 NA Intergenic Intergenic -32232 ENSMUSG00000111825.1 ENSMUSG00000111825 ENSMUST00000213227 Gm10646 lincRNA Interval_147849 chr7 74219567 74220068 + 0 NA Intergenic Intergenic -15741 ENSMUSG00000098303.1 ENSMUSG00000098303 ENSMUST00000184860 Gm27459 miRNA Interval_134894 chr6 33291416 33292155 + 0 NA intron (ENSMUSG00000029763.17, intron 3 of 5) protein_coding-intron (ENSMUSG00000029763.17, intron 3 of 17) -41632 ENSMUSG00000029763.17 ENSMUSG00000029763 ENSMUST00000134653 Exoc4 protein_coding Interval_20446 chr10 117665233 117665847 + 0 NA intron (ENSMUSG00000020183.11, intron 3 of 3) protein_coding-intron (ENSMUSG00000020183.11, intron 3 of 8) -3152 ENSMUSG00000096357.1 ENSMUSG00000096357 ENSMUST00000178844 Gm25709 snRNA Interval_12677 chr10 4277566 4278336 + 0 NA intron (ENSMUSG00000038587.10, intron 1 of 3) protein_coding-intron (ENSMUSG00000038587.10, intron 1 of 3) -56594 ENSMUSG00000038587.10 ENSMUSG00000038587 ENSMUST00000215696 Akap12 protein_coding Interval_66070 chr16 31413815 31414205 + 0 NA promoter-TSS (ENSMUSG00000116690.1) lincRNA-promoter-TSS (ENSMUSG00000116690.1) -45 ENSMUSG00000116690.1 ENSMUSG00000116690 ENSMUST00000231871 Gm49736 lincRNA Interval_10148 chr1 166103095 166103979 + 0 NA intron (ENSMUSG00000026564.9, intron 5 of 5) protein_coding-intron (ENSMUSG00000026564.9, intron 5 of 5) 11122 ENSMUSG00000102484.1 ENSMUSG00000102484 ENSMUST00000191624 Gm37923 lincRNA Interval_38250 chr12 76643048 76643243 + 0 NA intron (ENSMUSG00000021061.15, intron 2 of 31) protein_coding-intron (ENSMUSG00000021061.15, intron 2 of 35) -48835 ENSMUSG00000088356.1 ENSMUSG00000088356 ENSMUST00000157731 Gm24010 misc_RNA Interval_1689 chr1 31203981 31204337 + 0 NA exon (ENSMUSG00000050217.13, exon 5 of 5) protein_coding-exon (ENSMUSG00000050217.13, exon 5 of 5) 14689 ENSMUSG00000050217.13 ENSMUSG00000050217 ENSMUST00000161773 Lgsn protein_coding Interval_47226 chr13 78273639 78273917 + 0 NA exon (ENSMUSG00000114592.1, exon 1 of 1) processed_pseudogene-exon (ENSMUSG00000114592.1, exon 1 of 1) 174 ENSMUSG00000114592.1 ENSMUSG00000114592 ENSMUST00000224369 Gm5042 processed_pseudogene Interval_35185 chr12 17887361 17887687 + 0 NA Intergenic Intergenic 5327 ENSMUSG00000113294.1 ENSMUSG00000113294 ENSMUST00000223226 Gm49326 unprocessed_pseudogene Interval_52755 chr14 49392363 49393056 + 0 NA intron (ENSMUSG00000021852.14, intron 1 of 2) protein_coding-intron (ENSMUSG00000021852.14, intron 1 of 7) 92873 ENSMUSG00000115096.1 ENSMUSG00000115096 ENSMUST00000228016 Gm48940 antisense Interval_36937 chr12 55470227 55471724 + 0 NA Intergenic Intergenic 20835 ENSMUSG00000021025.8 ENSMUSG00000021025 ENSMUST00000219869 Nfkbia protein_coding Interval_60745 chr15 76491786 76491995 + 0 NA intron (ENSMUSG00000022556.11, intron 1 of 3) protein_coding-intron (ENSMUSG00000022556.11, intron 1 of 11) -7757 ENSMUSG00000022556.11 ENSMUSG00000022556 ENSMUST00000228688 Hsf1 protein_coding Interval_17057 chr10 70929433 70930094 + 0 NA intron (ENSMUSG00000014329.14, intron 20 of 21) protein_coding-intron (ENSMUSG00000014329.14, intron 20 of 21) 18726 ENSMUSG00000014329.14 ENSMUSG00000014329 ENSMUST00000144740 Bicc1 protein_coding Interval_13882 chr10 24200266 24200459 + 0 NA Intergenic Intergenic -23183 ENSMUSG00000020000.7 ENSMUSG00000020000 ENSMUST00000154916 Moxd1 protein_coding Interval_7928 chr1 134622705 134623023 + 0 NA promoter-TSS (ENSMUSG00000042207.17) protein_coding-promoter-TSS (ENSMUSG00000042207.17) 64 ENSMUSG00000042207.17 ENSMUSG00000042207 ENSMUST00000191572 Kdm5b protein_coding Interval_2093 chr1 36367811 36369667 + 0 NA promoter-TSS (ENSMUSG00000010453.12) protein_coding-promoter-TSS (ENSMUSG00000010453.12) 432 ENSMUSG00000010453.12 ENSMUSG00000010453 ENSMUST00000188957 Kansl3 protein_coding Interval_7344 chr1 130167449 130167780 + 0 NA intron (ENSMUSG00000042581.14, intron 8 of 9) protein_coding-intron (ENSMUSG00000042581.14, intron 20 of 27) -28366 ENSMUSG00000100623.1 ENSMUSG00000100623 ENSMUST00000190086 Gm29428 processed_pseudogene Interval_15645 chr10 52766619 52767562 + 0 NA intron (ENSMUSG00000038602.7, intron 1 of 7) protein_coding-intron (ENSMUSG00000038602.7, intron 1 of 7) -34403 ENSMUSG00000112257.1 ENSMUSG00000112257 ENSMUST00000218509 Gm47623 TEC Interval_12827 chr10 5899441 5899724 + 0 NA intron (ENSMUSG00000019775.17, intron 1 of 4) protein_coding-intron (ENSMUSG00000019775.17, intron 3 of 6) 22804 ENSMUSG00000019775.17 ENSMUSG00000019775 ENSMUST00000019909 Rgs17 protein_coding Interval_1485 chr1 24043113 24043417 + 0 NA intron (ENSMUSG00000026153.15, intron 11 of 20) protein_coding-intron (ENSMUSG00000026153.15, intron 11 of 20) -37635 ENSMUSG00000026154.4 ENSMUSG00000026154 ENSMUST00000155767 Sdhaf4 protein_coding Interval_18533 chr10 87041372 87041584 + 0 NA Intergenic Intergenic 41181 ENSMUSG00000089666.1 ENSMUSG00000089666 ENSMUST00000160532 Gm16269 processed_pseudogene Interval_3751 chr1 62773767 62775207 + 0 NA intron (ENSMUSG00000025969.15, intron 12 of 16) protein_coding-intron (ENSMUSG00000025969.15, intron 12 of 15) -34815 ENSMUSG00000103032.1 ENSMUSG00000103032 ENSMUST00000192219 Gm37121 TEC Interval_28343 chr11 75299038 75299728 + 0 NA TTS (ENSMUSG00000000751.13) protein_coding-TTS (ENSMUSG00000000751.13) 19225 ENSMUSG00000106179.1 ENSMUSG00000106179 ENSMUST00000198372 Gm47300 miRNA Interval_148483 chr7 81626309 81626888 + 0 NA intron (ENSMUSG00000025813.14, intron 3 of 6) protein_coding-intron (ENSMUSG00000025813.14, intron 3 of 8) 16489 ENSMUSG00000109194.1 ENSMUSG00000109194 ENSMUST00000207526 Gm44570 antisense Interval_125034 chr5 63983514 63983755 + 0 NA Intergenic Intergenic 7237 ENSMUSG00000106076.1 ENSMUSG00000106076 ENSMUST00000199444 Gm43840 processed_pseudogene Interval_28903 chr11 79170106 79170418 + 0 NA Intergenic Intergenic -42534 ENSMUSG00000081000.1 ENSMUSG00000081000 ENSMUST00000121698 Gm11200 processed_pseudogene Interval_94375 chr2 90596761 90597258 + 0 NA Intergenic Intergenic -16362 ENSMUSG00000025314.16 ENSMUSG00000025314 ENSMUST00000168621 Ptprj protein_coding Interval_63747 chr15 103215013 103216366 + 0 NA promoter-TSS (ENSMUSG00000009575.14) protein_coding-promoter-TSS (ENSMUSG00000009575.14) -323 ENSMUSG00000009575.14 ENSMUSG00000009575 ENSMUST00000127191 Cbx5 protein_coding Interval_16351 chr10 62404837 62405779 + 0 NA intron (ENSMUSG00000020080.8, intron 7 of 17) protein_coding-intron (ENSMUSG00000020080.8, intron 7 of 17) 17100 ENSMUSG00000020080.8 ENSMUSG00000020080 ENSMUST00000159579 Hkdc1 protein_coding Interval_84674 chr19 14910998 14911832 + 0 NA Intergenic Intergenic 49351 ENSMUSG00000063586.1 ENSMUSG00000063586 ENSMUST00000072982 Gm5513 processed_pseudogene Interval_71385 chr17 22887951 22888774 + 0 NA Intergenic Intergenic -7352 ENSMUSG00000117141.1 ENSMUSG00000117141 ENSMUST00000233639 Gm18214 processed_pseudogene Interval_166058 chr9 56151359 56151802 + 0 NA intron (ENSMUSG00000032324.11, intron 1 of 4) protein_coding-intron (ENSMUSG00000032324.11, intron 1 of 6) 13897 ENSMUSG00000032324.11 ENSMUSG00000032324 ENSMUST00000216320 Tspan3 protein_coding Interval_117880 chr4 126850176 126850500 + 0 NA promoter-TSS (ENSMUSG00000028830.14) protein_coding-promoter-TSS (ENSMUSG00000028830.14) 10774 ENSMUSG00000088984.1 ENSMUSG00000088984 ENSMUST00000158359 Gm25604 snoRNA Interval_168826 chr9 87688098 87688304 + 0 NA Intergenic Intergenic -41084 ENSMUSG00000103710.1 ENSMUSG00000103710 ENSMUST00000192660 D030062O11Rik TEC Interval_80325 chr18 39227421 39227654 + 0 NA intron (ENSMUSG00000036452.18, intron 13 of 22) protein_coding-intron (ENSMUSG00000036452.18, intron 13 of 22) -63898 ENSMUSG00000036452.18 ENSMUSG00000036452 ENSMUST00000133247 Arhgap26 protein_coding Interval_153589 chr8 3559267 3560139 + 0 NA Intergenic Intergenic -8292 ENSMUSG00000065952.13 ENSMUSG00000065952 ENSMUST00000086479 Rps23rg1 protein_coding Interval_128940 chr5 116208918 116209117 + 0 NA intron (ENSMUSG00000043913.14, intron 2 of 5) protein_coding-intron (ENSMUSG00000043913.14, intron 2 of 13) -34689 ENSMUSG00000086122.1 ENSMUSG00000086122 ENSMUST00000156169 Gm14507 antisense Interval_83628 chr19 3313109 3313971 + 0 NA Intergenic Intergenic 4041 ENSMUSG00000118213.1 ENSMUSG00000118213 ENSMUST00000237542 Gm50307 processed_pseudogene Interval_14665 chr10 38466472 38466642 + 0 NA Intergenic Intergenic -32422 ENSMUSG00000110782.1 ENSMUSG00000110782 ENSMUST00000214608 Gm48198 processed_pseudogene Interval_122625 chr5 24319909 24320624 + 0 NA intron (ENSMUSG00000038319.14, intron 3 of 3) protein_coding-intron (ENSMUSG00000038319.14, intron 14 of 14) 6253 ENSMUSG00000038319.14 ENSMUSG00000038319 ENSMUST00000142197 Kcnh2 protein_coding Interval_138314 chr6 87124348 87124768 + 0 NA Intergenic Intergenic 16294 ENSMUSG00000108195.1 ENSMUSG00000108195 ENSMUST00000204151 Gm44415 TEC Interval_173733 chrX 103266965 103267984 + 0 NA intron (ENSMUSG00000031325.15, intron 1 of 3) transcribed_unitary_pseudogene-intron (ENSMUSG00000031325.15, intron 1 of 3) 20604 ENSMUSG00000031325.15 ENSMUSG00000031325 ENSMUST00000183315 4930519F16Rik transcribed_unitary_pseudogene Interval_22076 chr11 6180719 6181577 + 0 NA intron (ENSMUSG00000053838.14, intron 1 of 2) protein_coding-intron (ENSMUSG00000053838.14, intron 2 of 5) 1886 ENSMUSG00000083209.1 ENSMUSG00000083209 ENSMUST00000118848 Gm11969 processed_pseudogene Interval_133361 chr6 3687513 3687791 + 0 NA intron (ENSMUSG00000023964.15, intron 14 of 14) protein_coding-intron (ENSMUSG00000023964.15, intron 15 of 15) 33733 ENSMUSG00000076357.2 ENSMUSG00000076357 ENSMUST00000102402 Mir653 miRNA Interval_63168 chr15 99516375 99517775 + 0 NA exon (ENSMUSG00000023011.8, exon 5 of 8) protein_coding-exon (ENSMUSG00000023011.8, exon 5 of 8) -6398 ENSMUSG00000023011.8 ENSMUSG00000023011 ENSMUST00000230603 Faim2 protein_coding Interval_62804 chr15 97089569 97089906 + 0 NA Intergenic Intergenic -69786 ENSMUSG00000022464.14 ENSMUSG00000022464 ENSMUST00000230907 Slc38a4 protein_coding Interval_38789 chr12 82349847 82350372 + 0 NA intron (ENSMUSG00000042700.16, intron 3 of 21) protein_coding-intron (ENSMUSG00000042700.16, intron 2 of 20) 146428 ENSMUSG00000094374.2 ENSMUSG00000094374 ENSMUST00000179295 Gm5435 processed_pseudogene Interval_116398 chr4 111483386 111483625 + 0 NA intron (ENSMUSG00000061298.14, intron 2 of 6) protein_coding-intron (ENSMUSG00000061298.14, intron 6 of 12) 50308 ENSMUSG00000028545.13 ENSMUSG00000028545 ENSMUST00000123667 Bend5 protein_coding Interval_149735 chr7 101013631 101014637 + 0 NA Intergenic Intergenic 4734 ENSMUSG00000108895.1 ENSMUSG00000108895 ENSMUST00000208100 Gm45070 processed_pseudogene Interval_12618 chr10 3932990 3934819 + 0 NA TTS (ENSMUSG00000089392.1) rRNA-TTS (ENSMUSG00000089392.1) 973 ENSMUSG00000089392.1 ENSMUSG00000089392 ENSMUST00000158767 Gm23023 rRNA Interval_134328 chr6 25275214 25275673 + 0 NA Intergenic Intergenic -75392 ENSMUSG00000089442.1 ENSMUSG00000089442 ENSMUST00000158817 Gm22529 snoRNA Interval_86912 chr19 44800246 44800691 + 0 NA intron (ENSMUSG00000004231.15, intron 6 of 10) protein_coding-intron (ENSMUSG00000004231.15, intron 6 of 10) -7938 ENSMUSG00000098952.1 ENSMUSG00000098952 ENSMUST00000184584 Mir6405 miRNA Interval_12372 chr1 192726929 192727743 + 0 NA exon (ENSMUSG00000037375.16, exon 5 of 12) protein_coding-exon (ENSMUSG00000037375.16, exon 5 of 12) -18235 ENSMUSG00000094131.1 ENSMUSG00000094131 ENSMUST00000082947 Gm22265 snRNA Interval_136387 chr6 54028761 54029513 + 0 NA Intergenic Intergenic 50408 ENSMUSG00000108060.2 ENSMUSG00000108060 ENSMUST00000203047 4921529L05Rik processed_transcript Interval_2644 chr1 42883282 42883807 + 0 NA intron (ENSMUSG00000060679.14, intron 3 of 6) protein_coding-intron (ENSMUSG00000060679.14, intron 4 of 10) -16726 ENSMUSG00000077448.1 ENSMUSG00000077448 ENSMUST00000104260 Gm23126 snoRNA Interval_129025 chr5 116829214 116830264 + 0 NA intron (ENSMUSG00000106909.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000106909.1, intron 1 of 1) 781 ENSMUSG00000106909.1 ENSMUSG00000106909 ENSMUST00000201752 Gm43122 lincRNA Interval_44009 chr13 39427882 39428101 + 0 NA Intergenic Intergenic -12574 ENSMUSG00000114512.1 ENSMUSG00000114512 ENSMUST00000226065 Gm47348 lincRNA Interval_45499 chr13 55494330 55495279 + 0 NA TTS (ENSMUSG00000021493.15) protein_coding-TTS (ENSMUSG00000021493.15) -12547 ENSMUSG00000034675.17 ENSMUSG00000034675 ENSMUST00000127867 Dbn1 protein_coding Interval_126245 chr5 83893766 83894507 + 0 NA Intergenic Intergenic 30973 ENSMUSG00000106576.1 ENSMUSG00000106576 ENSMUST00000197408 Gm4866 unprocessed_pseudogene Interval_168743 chr9 86592796 86593725 + 0 NA intron (ENSMUSG00000032418.15, intron 6 of 7) protein_coding-intron (ENSMUSG00000032418.15, intron 12 of 13) 21269 ENSMUSG00000032417.10 ENSMUSG00000032417 ENSMUST00000179212 Rwdd2a protein_coding Interval_93078 chr2 69964487 69964788 + 0 NA intron (ENSMUSG00000044308.17, intron 19 of 38) protein_coding-intron (ENSMUSG00000044308.17, intron 19 of 38) -24149 ENSMUSG00000044308.17 ENSMUSG00000044308 ENSMUST00000123890 Ubr3 protein_coding Interval_25177 chr11 44785406 44785677 + 0 NA intron (ENSMUSG00000057098.14, intron 6 of 15) protein_coding-intron (ENSMUSG00000057098.14, intron 6 of 15) -122865 ENSMUSG00000085784.1 ENSMUSG00000085784 ENSMUST00000130493 Gm12158 antisense Interval_31354 chr11 100221070 100222427 + 0 NA Intergenic Intergenic 10330 ENSMUSG00000084257.1 ENSMUSG00000084257 ENSMUST00000121423 Gm11597 unprocessed_pseudogene Interval_29058 chr11 80100116 80100363 + 0 NA intron (ENSMUSG00000017550.14, intron 3 of 22) protein_coding-intron (ENSMUSG00000017550.14, intron 3 of 22) -2764 ENSMUSG00000017550.14 ENSMUSG00000017550 ENSMUST00000154168 Atad5 protein_coding Interval_34786 chr12 11196077 11197263 + 0 NA intron (ENSMUSG00000112041.1, intron 2 of 4) lincRNA-intron (ENSMUSG00000112041.1, intron 2 of 2) 7711 ENSMUSG00000112041.1 ENSMUSG00000112041 ENSMUST00000218368 9530020I12Rik lincRNA Interval_151053 chr7 118206655 118207186 + 0 NA exon (ENSMUSG00000030655.15, exon 6 of 63) protein_coding-exon (ENSMUSG00000030655.15, exon 6 of 63) -14629 ENSMUSG00000030655.15 ENSMUSG00000030655 ENSMUST00000179847 Smg1 protein_coding Interval_136676 chr6 57526979 57527208 + 0 NA intron (ENSMUSG00000037826.5, intron 1 of 6) protein_coding-intron (ENSMUSG00000037826.5, intron 1 of 6) -11486 ENSMUSG00000037826.5 ENSMUSG00000037826 ENSMUST00000203713 Ppm1k protein_coding Interval_89329 chr2 19382323 19383417 + 0 NA intron (ENSMUSG00000023094.14, intron 2 of 2) protein_coding-intron (ENSMUSG00000023094.14, intron 2 of 4) 11029 ENSMUSG00000023094.14 ENSMUSG00000023094 ENSMUST00000153289 Msrb2 protein_coding Interval_72095 chr17 28007445 28008971 + 0 NA exon (ENSMUSG00000024219.16, exon 12 of 25) protein_coding-exon (ENSMUSG00000024219.16, exon 12 of 25) -5846 ENSMUSG00000117263.1 ENSMUSG00000117263 ENSMUST00000233367 Gm35290 antisense Interval_125873 chr5 75205654 75206418 + 0 NA Intergenic Intergenic 29205 ENSMUSG00000099060.1 ENSMUSG00000099060 ENSMUST00000183797 Mir7025 miRNA Interval_160545 chr8 110525095 110525470 + 0 NA intron (ENSMUSG00000059854.8, intron 43 of 86) protein_coding-intron (ENSMUSG00000059854.8, intron 43 of 86) 26297 ENSMUSG00000105131.1 ENSMUSG00000105131 ENSMUST00000197243 Gm47306 miRNA Interval_155634 chr8 35416689 35417825 + 0 NA Intergenic Intergenic -7751 ENSMUSG00000110384.1 ENSMUSG00000110384 ENSMUST00000211359 Gm45301 lincRNA Interval_114047 chr4 62742424 62743401 + 0 NA Intergenic Intergenic -15375 ENSMUSG00000086139.1 ENSMUSG00000086139 ENSMUST00000143618 Gm11211 lincRNA Interval_141030 chr6 124476550 124480438 + 0 NA Intergenic Intergenic 11729 ENSMUSG00000118414.1 ENSMUSG00000118414 ENSMUST00000238756 Gm50463 unitary_pseudogene Interval_123768 chr5 35372923 35373187 + 0 NA Intergenic Intergenic 11502 ENSMUSG00000106762.3 ENSMUSG00000106762 ENSMUST00000201921 4930478P22Rik lincRNA Interval_131616 chr5 138828286 138828510 + 0 NA Intergenic Intergenic 8318 ENSMUSG00000094504.3 ENSMUSG00000094504 ENSMUST00000179205 Gm5294 protein_coding Interval_100954 chr2 173608263 173609361 + 0 NA promoter-TSS (ENSMUSG00000055897.13) transcribed_unprocessed_pseudogene-promoter-TSS (ENSMUSG00000055897.13) -17499 ENSMUSG00000055897.13 ENSMUSG00000055897 ENSMUST00000133185 Ppp4r1l-ps transcribed_unprocessed_pseudogene Interval_99173 chr2 157762009 157762786 + 0 NA intron (ENSMUSG00000027649.15, intron 1 of 15) protein_coding-intron (ENSMUSG00000027649.15, intron 1 of 15) -27467 ENSMUSG00000027649.15 ENSMUSG00000027649 ENSMUST00000156300 Ctnnbl1 protein_coding Interval_69472 chr16 93769638 93770889 + 0 NA exon (ENSMUSG00000022946.10, exon 19 of 37) protein_coding-exon (ENSMUSG00000022946.10, exon 19 of 37) -22526 ENSMUSG00000022946.10 ENSMUSG00000022946 ENSMUST00000228423 Dop1b protein_coding Interval_124883 chr5 58879393 58879847 + 0 NA Intergenic Intergenic 121373 ENSMUSG00000106509.1 ENSMUSG00000106509 ENSMUST00000198671 Gm43394 processed_pseudogene Interval_53113 chr14 54526961 54527377 + 0 NA Intergenic Intergenic -9776 ENSMUSG00000023110.12 ENSMUSG00000023110 ENSMUST00000132801 Prmt5 protein_coding Interval_8537 chr1 140992799 140993092 + 0 NA Intergenic Intergenic 169618 ENSMUSG00000102500.1 ENSMUSG00000102500 ENSMUST00000194837 Gm37371 TEC Interval_96427 chr2 122431571 122431811 + 0 NA intron (ENSMUSG00000027219.13, intron 1 of 2) protein_coding-intron (ENSMUSG00000027219.13, intron 1 of 18) 4497 ENSMUSG00000083645.1 ENSMUSG00000083645 ENSMUST00000117152 Gm14086 unprocessed_pseudogene Interval_90549 chr2 31099901 31100426 + 0 NA intron (ENSMUSG00000075415.13, intron 2 of 6) protein_coding-intron (ENSMUSG00000075415.13, intron 2 of 13) 16149 ENSMUSG00000075415.13 ENSMUSG00000075415 ENSMUST00000136085 Fnbp1 protein_coding Interval_160041 chr8 105975036 105975683 + 0 NA intron (ENSMUSG00000031898.9, intron 7 of 9) protein_coding-intron (ENSMUSG00000031898.9, intron 7 of 9) 4070 ENSMUSG00000031898.9 ENSMUSG00000031898 ENSMUST00000034371 Dpep3 protein_coding Interval_113079 chr4 47639028 47639258 + 0 NA Intergenic Intergenic 35254 ENSMUSG00000098518.1 ENSMUSG00000098518 ENSMUST00000184188 Gm27668 misc_RNA Interval_12616 chr10 3925301 3925530 + 0 NA intron (ENSMUSG00000040624.18, intron 4 of 15) protein_coding-intron (ENSMUSG00000040624.18, intron 4 of 15) 9462 ENSMUSG00000089392.1 ENSMUSG00000089392 ENSMUST00000158767 Gm23023 rRNA Interval_92080 chr2 53063444 53063646 + 0 NA intron (ENSMUSG00000036053.17, intron 6 of 26) protein_coding-intron (ENSMUSG00000036053.17, intron 6 of 26) 127642 ENSMUSG00000061136.16 ENSMUSG00000061136 ENSMUST00000132031 Prpf40a protein_coding Interval_104657 chr3 69177342 69177549 + 0 NA Intergenic Intergenic -44974 ENSMUSG00000098207.1 ENSMUSG00000098207 ENSMUST00000183126 Arl14 protein_coding Interval_29376 chr11 83508224 83508583 + 0 NA Intergenic Intergenic -12753 ENSMUSG00000065307.1 ENSMUSG00000065307 ENSMUST00000083373 Gm23247 snRNA Interval_165447 chr9 48166325 48167026 + 0 NA intron (ENSMUSG00000044229.9, intron 1 of 10) protein_coding-intron (ENSMUSG00000044229.9, intron 1 of 10) -7710 ENSMUSG00000110924.1 ENSMUSG00000110924 ENSMUST00000214538 Gm40518 lincRNA Interval_174550 chrX 157578246 157579887 + 0 NA intron (ENSMUSG00000046873.18, intron 3 of 5) protein_coding-intron (ENSMUSG00000046873.18, intron 3 of 10) -10081 ENSMUSG00000091736.3 ENSMUSG00000091736 ENSMUST00000065806 Yy2 protein_coding Interval_86649 chr19 42291531 42292257 + 0 NA intron (ENSMUSG00000042401.8, intron 11 of 14) protein_coding-intron (ENSMUSG00000042401.8, intron 11 of 14) -11724 ENSMUSG00000093234.1 ENSMUSG00000093234 ENSMUST00000175493 Mir3085 miRNA Interval_98140 chr2 148701140 148701416 + 0 NA intron (ENSMUSG00000027438.14, intron 6 of 9) protein_coding-intron (ENSMUSG00000027438.14, intron 7 of 10) 16666 ENSMUSG00000027439.9 ENSMUSG00000027439 ENSMUST00000151362 Gzf1 protein_coding Interval_71336 chr17 22380215 22381110 + 0 NA Intergenic Intergenic 19209 ENSMUSG00000044501.17 ENSMUSG00000044501 ENSMUST00000121315 Zfp758 protein_coding Interval_77279 chr17 87727323 87727651 + 0 NA Intergenic Intergenic 30946 ENSMUSG00000024151.13 ENSMUSG00000024151 ENSMUST00000174703 Msh2 protein_coding Interval_3310 chr1 56688438 56689248 + 0 NA Intergenic Intergenic -51408 ENSMUSG00000045336.5 ENSMUSG00000045336 ENSMUST00000062085 Hsfy2 protein_coding Interval_107992 chr3 119119856 119120164 + 0 NA intron (ENSMUSG00000033308.16, intron 14 of 22) protein_coding-intron (ENSMUSG00000033308.16, intron 14 of 22) 251766 ENSMUSG00000106542.1 ENSMUSG00000106542 ENSMUST00000197510 Gm43410 TEC Interval_106847 chr3 101287937 101288256 + 0 NA promoter-TSS (ENSMUSG00000027863.8) protein_coding-promoter-TSS (ENSMUSG00000027863.8) -7707 ENSMUSG00000027863.8 ENSMUSG00000027863 ENSMUST00000152321 Cd2 protein_coding Interval_136173 chr6 51709792 51710720 + 0 NA intron (ENSMUSG00000108145.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000108145.1, intron 1 of 1) 825 ENSMUSG00000108145.1 ENSMUSG00000108145 ENSMUST00000203781 Gm38811 lincRNA Interval_137522 chr6 72874496 72875306 + 0 NA intron (ENSMUSG00000055239.10, intron 1 of 3) protein_coding-intron (ENSMUSG00000055239.10, intron 1 of 6) 21018 ENSMUSG00000107610.1 ENSMUSG00000107610 ENSMUST00000205107 D530018E20Rik TEC Interval_35839 chr12 31111132 31112123 + 0 NA Intergenic Intergenic -10981 ENSMUSG00000112799.1 ENSMUSG00000112799 ENSMUST00000219793 Gm48100 processed_pseudogene Interval_129636 chr5 121462725 121463507 + 0 NA promoter-TSS (ENSMUSG00000029452.18) protein_coding-promoter-TSS (ENSMUSG00000029452.18) 9272 ENSMUSG00000082760.2 ENSMUSG00000082760 ENSMUST00000122095 Gm15546 processed_pseudogene Interval_139991 chr6 113251878 113252170 + 0 NA intron (ENSMUSG00000030269.14, intron 3 of 14) protein_coding-intron (ENSMUSG00000030269.14, intron 3 of 18) -3808 ENSMUSG00000030269.14 ENSMUSG00000030269 ENSMUST00000151149 Mtmr14 protein_coding Interval_44351 chr13 44018396 44019457 + 0 NA promoter-TSS (ENSMUSG00000113252.1) lincRNA-promoter-TSS (ENSMUSG00000113252.1) -404 ENSMUSG00000113252.1 ENSMUSG00000113252 ENSMUST00000223171 Gm33489 lincRNA Interval_141811 chr6 134652095 134652868 + 0 NA intron (ENSMUSG00000042992.15, intron 2 of 2) protein_coding-intron (ENSMUSG00000042992.15, intron 2 of 3) -19993 ENSMUSG00000032718.4 ENSMUSG00000032718 ENSMUST00000047443 Mansc1 protein_coding Interval_140196 chr6 115306066 115306285 + 0 NA Intergenic Intergenic 53180 ENSMUSG00000009394.13 ENSMUSG00000009394 ENSMUST00000204726 Syn2 protein_coding Interval_124099 chr5 38299923 38300167 + 0 NA exon (ENSMUSG00000051596.13, exon 6 of 8) protein_coding-exon (ENSMUSG00000051596.13, exon 6 of 8) 14022 ENSMUSG00000051596.13 ENSMUSG00000051596 ENSMUST00000187863 Otop1 protein_coding Interval_1074 chr1 15050895 15052211 + 0 NA Intergenic Intergenic -32394 ENSMUSG00000088159.1 ENSMUSG00000088159 ENSMUST00000157534 Gm26345 snoRNA Interval_23979 chr11 29157946 29158924 + 0 NA intron (ENSMUSG00000020464.15, intron 24 of 26) protein_coding-intron (ENSMUSG00000020464.15, intron 25 of 27) 15123 ENSMUSG00000086725.1 ENSMUSG00000086725 ENSMUST00000129876 A630052C17Rik processed_transcript Interval_150088 chr7 105743465 105744878 + 0 NA promoter-TSS (ENSMUSG00000043866.11) protein_coding-promoter-TSS (ENSMUSG00000043866.11) -561 ENSMUSG00000043866.11 ENSMUSG00000043866 ENSMUST00000054556 Taf10 protein_coding Interval_64814 chr16 16102877 16104699 + 0 NA intron (ENSMUSG00000041974.10, intron 5 of 16) protein_coding-intron (ENSMUSG00000041974.10, intron 5 of 19) 4190 ENSMUSG00000116385.1 ENSMUSG00000116385 ENSMUST00000230117 Gm18334 processed_pseudogene Interval_156360 chr8 47693349 47693554 + 0 NA Intergenic Intergenic 18060 ENSMUSG00000074357.3 ENSMUSG00000074357 ENSMUST00000211481 AA386476 bidirectional_promoter_lncRNA Interval_134585 chr6 29758263 29759134 + 0 NA intron (ENSMUSG00000001761.7, intron 9 of 11) protein_coding-intron (ENSMUSG00000001761.7, intron 9 of 11) 7937 ENSMUSG00000081564.1 ENSMUSG00000081564 ENSMUST00000119868 Gm13717 processed_pseudogene Interval_50394 chr14 12397403 12398125 + 0 NA intron (ENSMUSG00000054423.14, intron 27 of 28) protein_coding-intron (ENSMUSG00000054423.14, intron 27 of 28) 4466 ENSMUSG00000114624.1 ENSMUSG00000114624 ENSMUST00000225907 Gm48267 TEC Interval_72835 chr17 32474575 32475382 + 0 NA intron (ENSMUSG00000061126.5, intron 4 of 13) protein_coding-intron (ENSMUSG00000061126.5, intron 2 of 11) 22255 ENSMUSG00000061126.5 ENSMUSG00000061126 ENSMUST00000235903 Cyp4f39 protein_coding Interval_165210 chr9 45363786 45364234 + 0 NA Intergenic Intergenic -6175 ENSMUSG00000066705.7 ENSMUSG00000066705 ENSMUST00000215281 Fxyd6 protein_coding Interval_174067 chrX 134254493 134254729 + 0 NA intron (ENSMUSG00000067369.12, intron 6 of 11) protein_coding-intron (ENSMUSG00000067369.12, intron 6 of 12) 22316 ENSMUSG00000067369.12 ENSMUSG00000067369 ENSMUST00000087540 Trmt2b protein_coding Interval_133179 chr5 150367035 150367489 + 0 NA intron (ENSMUSG00000056602.12, intron 11 of 60) protein_coding-intron (ENSMUSG00000056602.12, intron 11 of 60) -67821 ENSMUSG00000106719.1 ENSMUSG00000106719 ENSMUST00000201397 Gm42556 antisense Interval_51658 chr14 31176298 31177844 + 0 NA promoter-TSS (ENSMUSG00000021910.15) protein_coding-promoter-TSS (ENSMUSG00000021910.15) 14018 ENSMUSG00000021910.15 ENSMUSG00000021910 ENSMUST00000167602 Nisch protein_coding Interval_151564 chr7 123721597 123721908 + 0 NA Intergenic Intergenic 220457 ENSMUSG00000084484.1 ENSMUSG00000084484 ENSMUST00000122535 Gm23788 snRNA Interval_149643 chr7 100301103 100302173 + 0 NA promoter-TSS (ENSMUSG00000051048.17) protein_coding-promoter-TSS (ENSMUSG00000051048.17) 57 ENSMUSG00000051048.17 ENSMUSG00000051048 ENSMUST00000208565 P4ha3 protein_coding Interval_22582 chr11 11923015 11923535 + 0 NA Intergenic Intergenic -9527 ENSMUSG00000087990.2 ENSMUSG00000087990 ENSMUST00000157365 Gm25058 scaRNA Interval_137142 chr6 68062626 68063082 + 0 NA Intergenic Intergenic -3515 ENSMUSG00000106098.1 ENSMUSG00000106098 ENSMUST00000198287 Igkv14-118-2 IG_V_pseudogene Interval_776 chr1 10879694 10880589 + 0 NA Intergenic Intergenic 11453 ENSMUSG00000100648.1 ENSMUSG00000100648 ENSMUST00000188013 Gm28659 processed_pseudogene Interval_59259 chr15 50227486 50227674 + 0 NA Intergenic Intergenic -59318 ENSMUSG00000115478.1 ENSMUSG00000115478 ENSMUST00000227182 Gm49198 lincRNA Interval_114376 chr4 74406225 74406402 + 0 NA TTS (ENSMUSG00000028397.13) protein_coding-TTS (ENSMUSG00000028397.13) 143504 ENSMUSG00000028397.13 ENSMUSG00000028397 ENSMUST00000150439 Kdm4c protein_coding Interval_90034 chr2 27438299 27438579 + 0 NA Intergenic Intergenic -3885 ENSMUSG00000109946.1 ENSMUSG00000109946 ENSMUST00000209262 Brd3os protein_coding Interval_50570 chr14 15756117 15756560 + 0 NA intron (ENSMUSG00000114794.1, intron 3 of 3) lincRNA-intron (ENSMUSG00000114794.1, intron 3 of 3) -17351 ENSMUSG00000114586.1 ENSMUSG00000114586 ENSMUST00000225565 Gm31804 lincRNA Interval_64486 chr16 12118745 12118979 + 0 NA intron (ENSMUSG00000022494.15, intron 2 of 4) protein_coding-intron (ENSMUSG00000022494.15, intron 2 of 3) 134404 ENSMUSG00000022494.15 ENSMUSG00000022494 ENSMUST00000229804 Shisa9 protein_coding Interval_47327 chr13 81438835 81440026 + 0 NA exon (ENSMUSG00000069170.14, exon 67 of 90) protein_coding-exon (ENSMUSG00000069170.14, exon 67 of 90) -61372 ENSMUSG00000114454.1 ENSMUSG00000114454 ENSMUST00000224788 Gm48567 processed_pseudogene Interval_93261 chr2 71540767 71541629 + 0 NA Intergenic Intergenic -3388 ENSMUSG00000084946.2 ENSMUSG00000084946 ENSMUST00000137251 Dlx1as antisense Interval_84639 chr19 14569734 14570352 + 0 NA intron (ENSMUSG00000024642.17, intron 2 of 3) protein_coding-intron (ENSMUSG00000024642.17, intron 4 of 19) 25496 ENSMUSG00000024642.17 ENSMUSG00000024642 ENSMUST00000235975 Tle4 protein_coding Interval_83991 chr19 5980487 5981004 + 0 NA intron (ENSMUSG00000037451.8, intron 4 of 4) protein_coding-intron (ENSMUSG00000037451.8, intron 5 of 9) 5398 ENSMUSG00000037451.8 ENSMUSG00000037451 ENSMUST00000237046 Slc22a20 protein_coding Interval_20782 chr10 120920529 120921053 + 0 NA Intergenic Intergenic -7395 ENSMUSG00000082936.1 ENSMUSG00000082936 ENSMUST00000118291 Gm16166 processed_pseudogene Interval_8560 chr1 142332613 142332865 + 0 NA Intergenic Intergenic 123075 ENSMUSG00000099671.2 ENSMUSG00000099671 ENSMUST00000191024 Gm18183 processed_pseudogene Interval_62390 chr15 91653353 91653845 + 0 NA Intergenic Intergenic -36162 ENSMUSG00000087965.1 ENSMUSG00000087965 ENSMUST00000157340 Gm25389 misc_RNA Interval_55401 chr14 86731217 86731851 + 0 NA intron (ENSMUSG00000022021.14, intron 1 of 3) protein_coding-intron (ENSMUSG00000022021.14, intron 27 of 27) -24349 ENSMUSG00000115306.1 ENSMUSG00000115306 ENSMUST00000226731 Gm49159 TEC Interval_23174 chr11 20331908 20333391 + 0 NA promoter-TSS (ENSMUSG00000020142.12) protein_coding-promoter-TSS (ENSMUSG00000020142.12) 64 ENSMUSG00000020142.12 ENSMUSG00000020142 ENSMUST00000004634 Slc1a4 protein_coding Interval_140874 chr6 122507962 122508807 + 0 NA intron (ENSMUSG00000030116.14, intron 1 of 3) protein_coding-intron (ENSMUSG00000030116.14, intron 1 of 3) -5199 ENSMUSG00000030116.14 ENSMUSG00000030116 ENSMUST00000126357 Mfap5 protein_coding Interval_7757 chr1 133474502 133474817 + 0 NA Intergenic Intergenic -50282 ENSMUSG00000070643.11 ENSMUSG00000070643 ENSMUST00000126530 Sox13 protein_coding Interval_147786 chr7 73548965 73549148 + 0 NA intron (ENSMUSG00000108563.1, intron 2 of 3) processed_transcript-intron (ENSMUSG00000101970.8, intron 4 of 4) 9091 ENSMUSG00000101970.8 ENSMUSG00000101970 ENSMUST00000184655 1810026B05Rik processed_transcript Interval_57970 chr15 25789167 25789801 + 0 NA intron (ENSMUSG00000022272.17, intron 27 of 40) protein_coding-intron (ENSMUSG00000022272.17, intron 7 of 20) 20928 ENSMUSG00000022272.17 ENSMUSG00000022272 ENSMUST00000145587 Myo10 protein_coding Interval_112212 chr4 35964832 35965182 + 0 NA intron (ENSMUSG00000045083.14, intron 1 of 2) protein_coding-intron (ENSMUSG00000045083.14, intron 2 of 2) 39172 ENSMUSG00000082169.1 ENSMUSG00000082169 ENSMUST00000121343 Gm12369 processed_pseudogene Interval_21436 chr10 128601482 128601813 + 0 NA Intergenic Intergenic 6032 ENSMUSG00000111936.1 ENSMUSG00000111936 ENSMUST00000219469 Gm47540 lincRNA Interval_52153 chr14 37197114 37198397 + 0 NA Intergenic Intergenic -14690 ENSMUSG00000114675.1 ENSMUSG00000114675 ENSMUST00000224221 Gm18834 processed_pseudogene Interval_136759 chr6 59185677 59186226 + 0 NA Intergenic Intergenic 7302 ENSMUSG00000107987.1 ENSMUSG00000107987 ENSMUST00000204516 Gm43905 processed_pseudogene Interval_8323 chr1 137330783 137331413 + 0 NA Intergenic Intergenic -5256 ENSMUSG00000102738.1 ENSMUSG00000102738 ENSMUST00000191810 1700006P03Rik TEC Interval_31915 chr11 103828886 103831148 + 0 NA intron (ENSMUSG00000034187.18, intron 17 of 20) protein_coding-intron (ENSMUSG00000034187.18, intron 17 of 20) 42305 ENSMUSG00000034187.18 ENSMUSG00000034187 ENSMUST00000149642 Nsf protein_coding Interval_168635 chr9 84719365 84719578 + 0 NA Intergenic Intergenic -42469 ENSMUSG00000111770.1 ENSMUSG00000111770 ENSMUST00000215561 Gm48811 processed_pseudogene Interval_71685 chr17 25415135 25415452 + 0 NA intron (ENSMUSG00000024112.16, intron 2 of 8) protein_coding-intron (ENSMUSG00000024112.16, intron 2 of 34) -25821 ENSMUSG00000024112.16 ENSMUSG00000024112 ENSMUST00000159052 Cacna1h protein_coding Interval_117176 chr4 120259486 120260051 + 0 NA Intergenic Intergenic 27581 ENSMUSG00000052135.8 ENSMUSG00000052135 ENSMUST00000102656 Foxo6 protein_coding Interval_109588 chr3 144752941 144753737 + 0 NA intron (ENSMUSG00000056025.12, intron 6 of 13) protein_coding-intron (ENSMUSG00000056025.12, intron 6 of 12) 3857 ENSMUSG00000106424.1 ENSMUSG00000106424 ENSMUST00000196146 Gm34866 antisense Interval_130517 chr5 128524600 128525150 + 0 NA Intergenic Intergenic 4654 ENSMUSG00000105172.1 ENSMUSG00000105172 ENSMUST00000196193 Gm42499 TEC Interval_54773 chr14 74940745 74941143 + 0 NA intron (ENSMUSG00000068015.8, intron 1 of 18) protein_coding-intron (ENSMUSG00000068015.8, intron 1 of 19) 14499 ENSMUSG00000115002.1 ENSMUSG00000115002 ENSMUST00000227773 Gm10847 antisense Interval_21314 chr10 127903696 127904121 + 0 NA intron (ENSMUSG00000040127.13, intron 2 of 2) protein_coding-intron (ENSMUSG00000040127.13, intron 3 of 3) 1862 ENSMUSG00000040127.13 ENSMUSG00000040127 ENSMUST00000149849 Sdr9c7 protein_coding Interval_54280 chr14 67110638 67110971 + 0 NA Intergenic Intergenic 35974 ENSMUSG00000098365.1 ENSMUSG00000098365 ENSMUST00000184709 Gm27647 miRNA Interval_99538 chr2 163037118 163037788 + 0 NA intron (ENSMUSG00000017858.12, intron 10 of 12) protein_coding-intron (ENSMUSG00000017858.12, intron 10 of 12) 15010 ENSMUSG00000017858.12 ENSMUSG00000017858 ENSMUST00000152201 Ift52 protein_coding Interval_97824 chr2 144284684 144284985 + 0 NA Intergenic Intergenic 14171 ENSMUSG00000027424.11 ENSMUSG00000027424 ENSMUST00000110027 Mgme1 protein_coding Interval_11804 chr1 185548488 185549041 + 0 NA Intergenic Intergenic 61470 ENSMUSG00000102185.1 ENSMUSG00000102185 ENSMUST00000192616 5033404E19Rik transcribed_processed_pseudogene Interval_118003 chr4 127809038 127809267 + 0 NA Intergenic Intergenic 3021 ENSMUSG00000087510.1 ENSMUSG00000087510 ENSMUST00000141892 1700112K13Rik lincRNA Interval_25680 chr11 50737401 50737836 + 0 NA intron (ENSMUSG00000036545.9, intron 4 of 20) protein_coding-intron (ENSMUSG00000036545.9, intron 4 of 21) -12074 ENSMUSG00000085902.1 ENSMUSG00000085902 ENSMUST00000144876 Gm12200 antisense Interval_30834 chr11 96777302 96778161 + 0 NA promoter-TSS (ENSMUSG00000020876.14) protein_coding-promoter-TSS (ENSMUSG00000020876.14) -211 ENSMUSG00000020876.14 ENSMUSG00000020876 ENSMUST00000136799 Snx11 protein_coding Interval_50877 chr14 20400183 20400519 + 0 NA intron (ENSMUSG00000039543.16, intron 25 of 28) protein_coding-intron (ENSMUSG00000039543.16, intron 24 of 27) 1992 ENSMUSG00000084942.1 ENSMUSG00000084942 ENSMUST00000125558 7330404K18Rik antisense Interval_34580 chr12 5410058 5410874 + 0 NA intron (ENSMUSG00000037735.7, intron 1 of 1) lincRNA-intron (ENSMUSG00000037735.7, intron 1 of 1) -1175 ENSMUSG00000037735.7 ENSMUSG00000037735 ENSMUST00000163627 2810032G03Rik lincRNA Interval_86289 chr19 38420874 38422011 + 0 NA Intergenic Intergenic 25401 ENSMUSG00000044026.3 ENSMUSG00000044026 ENSMUST00000236865 Slc35g1 protein_coding Interval_38180 chr12 76222055 76222628 + 0 NA intron (ENSMUSG00000021056.8, intron 3 of 3) protein_coding-intron (ENSMUSG00000021056.8, intron 3 of 9) 7123 ENSMUSG00000021056.8 ENSMUSG00000021056 ENSMUST00000219327 Tex21 protein_coding Interval_96391 chr2 122140999 122142040 + 0 NA intron (ENSMUSG00000027233.4, intron 2 of 17) protein_coding-intron (ENSMUSG00000027233.4, intron 2 of 17) -6167 ENSMUSG00000060802.8 ENSMUSG00000060802 ENSMUST00000102476 B2m protein_coding Interval_124856 chr5 57001811 57002096 + 0 NA Intergenic Intergenic -108871 ENSMUSG00000088751.1 ENSMUSG00000088751 ENSMUST00000158126 Gm24902 snoRNA Interval_111198 chr4 14679041 14680255 + 0 NA intron (ENSMUSG00000023151.9, intron 3 of 3) protein_coding-intron (ENSMUSG00000023151.9, intron 7 of 8) -58151 ENSMUSG00000040569.13 ENSMUSG00000040569 ENSMUST00000143105 Slc26a7 protein_coding Interval_68373 chr16 74801402 74801900 + 0 NA Intergenic Intergenic 74287 ENSMUSG00000116881.1 ENSMUSG00000116881 ENSMUST00000232678 Gm49674 TEC Interval_134250 chr6 23758277 23758478 + 0 NA intron (ENSMUSG00000017978.18, intron 2 of 29) protein_coding-intron (ENSMUSG00000017978.18, intron 1 of 29) 80760 ENSMUSG00000017978.18 ENSMUSG00000017978 ENSMUST00000115355 Cadps2 protein_coding Interval_18198 chr10 83638981 83639603 + 0 NA intron (ENSMUSG00000020263.14, intron 2 of 8) protein_coding-intron (ENSMUSG00000020263.14, intron 2 of 20) -19979 ENSMUSG00000112072.1 ENSMUSG00000112072 ENSMUST00000218849 Gm47244 processed_pseudogene Interval_12226 chr1 190956028 190956281 + 0 NA intron (ENSMUSG00000037568.12, intron 7 of 7) protein_coding-intron (ENSMUSG00000037568.12, intron 7 of 7) 18902 ENSMUSG00000026634.16 ENSMUSG00000026634 ENSMUST00000146048 Angel2 protein_coding Interval_60151 chr15 66536233 66536624 + 0 NA intron (ENSMUSG00000036944.6, intron 7 of 9) protein_coding-intron (ENSMUSG00000036944.6, intron 7 of 9) 24675 ENSMUSG00000036944.6 ENSMUSG00000036944 ENSMUST00000048372 Tmem71 protein_coding Interval_173843 chrX 105911446 105912493 + 0 NA intron (ENSMUSG00000031229.16, intron 1 of 2) protein_coding-intron (ENSMUSG00000031229.16, intron 1 of 5) -36664 ENSMUSG00000031229.16 ENSMUSG00000031229 ENSMUST00000126345 Atrx protein_coding Interval_40739 chr12 108071013 108071228 + 0 NA Intergenic Intergenic -67706 ENSMUSG00000048251.15 ENSMUSG00000048251 ENSMUST00000109891 Bcl11b protein_coding Interval_45301 chr13 54164633 54166026 + 0 NA Intergenic Intergenic 24394 ENSMUSG00000114042.1 ENSMUSG00000114042 ENSMUST00000220543 Gm18473 processed_pseudogene Interval_25213 chr11 45434657 45434988 + 0 NA Intergenic Intergenic -14038 ENSMUSG00000085476.1 ENSMUSG00000085476 ENSMUST00000123422 Gm12162 lincRNA Interval_108274 chr3 123212020 123213331 + 0 NA promoter-TSS (ENSMUSG00000106490.1) TEC-promoter-TSS (ENSMUSG00000106490.1) -728 ENSMUSG00000106490.1 ENSMUSG00000106490 ENSMUST00000199138 Gm43283 TEC Interval_133885 chr6 14250902 14251334 + 0 NA Intergenic Intergenic 137802 ENSMUSG00000088975.1 ENSMUSG00000088975 ENSMUST00000158350 Gm23760 snoRNA Interval_155883 chr8 40609666 40610475 + 0 NA intron (ENSMUSG00000039431.16, intron 1 of 11) protein_coding-intron (ENSMUSG00000039431.16, intron 1 of 14) 24727 ENSMUSG00000039431.16 ENSMUSG00000039431 ENSMUST00000174537 Mtmr7 protein_coding Interval_55381 chr14 86358480 86359294 + 0 NA Intergenic Intergenic 38602 ENSMUSG00000115089.1 ENSMUSG00000115089 ENSMUST00000226132 Gm4350 processed_pseudogene Interval_72164 chr17 28368292 28368946 + 0 NA Intergenic Intergenic -12445 ENSMUSG00000037446.14 ENSMUSG00000037446 ENSMUST00000150341 Tulp1 protein_coding Interval_156525 chr8 49529263 49529537 + 0 NA intron (ENSMUSG00000031559.15, intron 8 of 9) lincRNA-intron (ENSMUSG00000031559.15, intron 8 of 9) 7976 ENSMUSG00000110688.1 ENSMUSG00000110688 ENSMUST00000212088 Gm45696 TEC Interval_5496 chr1 89258195 89258566 + 0 NA Intergenic Intergenic -1399 ENSMUSG00000102083.1 ENSMUSG00000102083 ENSMUST00000191231 Gm5259 processed_pseudogene Interval_38775 chr12 82254026 82254569 + 0 NA intron (ENSMUSG00000042700.16, intron 3 of 3) protein_coding-intron (ENSMUSG00000042700.16, intron 2 of 22) 84821 ENSMUSG00000042700.16 ENSMUSG00000042700 ENSMUST00000221327 Sipa1l1 protein_coding Interval_14543 chr10 35161345 35161646 + 0 NA Intergenic Intergenic 19182 ENSMUSG00000111216.1 ENSMUSG00000111216 ENSMUST00000216575 Gm47044 processed_pseudogene Interval_123685 chr5 34489237 34489608 + 0 NA exon (ENSMUSG00000106678.1, exon 1 of 1) TEC-exon (ENSMUSG00000106678.1, exon 1 of 1) 2108 ENSMUSG00000106678.1 ENSMUSG00000106678 ENSMUST00000200867 Gm43457 TEC Interval_30684 chr11 95882764 95884706 + 0 NA intron (ENSMUSG00000013418.8, intron 5 of 10) protein_coding-intron (ENSMUSG00000013418.8, intron 5 of 10) 8657 ENSMUSG00000086255.1 ENSMUSG00000086255 ENSMUST00000129261 Gm11534 antisense Interval_35556 chr12 24766573 24767832 + 0 NA Intergenic Intergenic 4861 ENSMUSG00000114076.1 ENSMUSG00000114076 ENSMUST00000222531 Gm48896 lincRNA Interval_131695 chr5 139343959 139345652 + 0 NA intron (ENSMUSG00000045438.12, intron 1 of 2) protein_coding-intron (ENSMUSG00000045438.12, intron 1 of 2) 6613 ENSMUSG00000045438.12 ENSMUSG00000045438 ENSMUST00000148000 Cox19 protein_coding Interval_50672 chr14 17978278 17978564 + 0 NA intron (ENSMUSG00000021779.17, intron 2 of 4) protein_coding-intron (ENSMUSG00000021779.17, intron 4 of 9) 15600 ENSMUSG00000021779.17 ENSMUSG00000021779 ENSMUST00000022304 Thrb protein_coding Interval_152659 chr7 135809549 135809777 + 0 NA intron (ENSMUSG00000109831.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000109831.1, intron 1 of 2) -44019 ENSMUSG00000109898.1 ENSMUSG00000109898 ENSMUST00000211371 6330420H09Rik lincRNA Interval_149780 chr7 101419176 101419836 + 0 NA intron (ENSMUSG00000030653.17, intron 1 of 31) protein_coding-intron (ENSMUSG00000030653.17, intron 1 of 31) -2203 ENSMUSG00000110195.1 ENSMUSG00000110195 ENSMUST00000209315 Pde2a protein_coding Interval_90398 chr2 30171234 30172498 + 0 NA exon (ENSMUSG00000015337.5, exon 1 of 3) protein_coding-exon (ENSMUSG00000015337.5, exon 1 of 3) 373 ENSMUSG00000015337.5 ENSMUSG00000015337 ENSMUST00000015481 Endog protein_coding Interval_25608 chr11 50188303 50188758 + 0 NA intron (ENSMUSG00000020381.10, intron 4 of 5) protein_coding-intron (ENSMUSG00000020381.10, intron 3 of 6) 14086 ENSMUSG00000020381.10 ENSMUSG00000020381 ENSMUST00000123164 Mrnip protein_coding Interval_4724 chr1 77740599 77741250 + 0 NA Intergenic Intergenic 157522 ENSMUSG00000065215.1 ENSMUSG00000065215 ENSMUST00000083281 Gm26263 snRNA Interval_3775 chr1 63035082 63035350 + 0 NA intron (ENSMUSG00000040865.15, intron 9 of 12) protein_coding-intron (ENSMUSG00000040865.15, intron 9 of 12) 2510 ENSMUSG00000088953.1 ENSMUSG00000088953 ENSMUST00000158328 Gm24942 snoRNA Interval_97184 chr2 132111319 132111820 + 0 NA promoter-TSS (ENSMUSG00000027340.15) protein_coding-promoter-TSS (ENSMUSG00000027340.15) 11700 ENSMUSG00000082990.1 ENSMUSG00000082990 ENSMUST00000121434 Gm14052 processed_pseudogene Interval_15928 chr10 59397316 59397910 + 0 NA Intergenic Intergenic 1858 ENSMUSG00000069622.5 ENSMUSG00000069622 ENSMUST00000092511 Gm10273 processed_pseudogene Interval_19444 chr10 99293031 99293795 + 0 NA Intergenic Intergenic -5753 ENSMUSG00000044633.4 ENSMUSG00000044633 ENSMUST00000060657 B530045E10Rik lincRNA Interval_36917 chr12 55329852 55330199 + 0 NA intron (ENSMUSG00000021023.14, intron 3 of 6) protein_coding-intron (ENSMUSG00000021023.14, intron 3 of 6) 30448 ENSMUSG00000021023.14 ENSMUSG00000021023 ENSMUST00000183654 Prorp protein_coding Interval_145849 chr7 40377837 40378305 + 0 NA intron (ENSMUSG00000100650.1, intron 2 of 2) lincRNA-intron (ENSMUSG00000100650.1, intron 2 of 2) 14621 ENSMUSG00000087914.1 ENSMUSG00000087914 ENSMUST00000157289 Gm24910 misc_RNA Interval_37752 chr12 71707876 71708208 + 0 NA intron (ENSMUSG00000114028.1, intron 3 of 5) lincRNA-intron (ENSMUSG00000114028.1, intron 3 of 5) -16610 ENSMUSG00000084463.1 ENSMUSG00000084463 ENSMUST00000122514 Gm22959 misc_RNA Interval_145874 chr7 40942753 40943112 + 0 NA Intergenic Intergenic -26987 ENSMUSG00000099768.1 ENSMUSG00000099768 ENSMUST00000189416 Gm29293 unprocessed_pseudogene Interval_3665 chr1 60496982 60497189 + 0 NA promoter-TSS (ENSMUSG00000026014.15) protein_coding-promoter-TSS (ENSMUSG00000026014.15) 6180 ENSMUSG00000026014.15 ENSMUSG00000026014 ENSMUST00000142258 Raph1 protein_coding Interval_152524 chr7 133827712 133828713 + 0 NA intron (ENSMUSG00000053111.13, intron 2 of 7) protein_coding-intron (ENSMUSG00000053111.13, intron 1 of 10) 38727 ENSMUSG00000053111.13 ENSMUSG00000053111 ENSMUST00000211077 Fank1 protein_coding Interval_8035 chr1 135339556 135340455 + 0 NA intron (ENSMUSG00000048096.7, intron 1 of 2) protein_coding-intron (ENSMUSG00000048096.7, intron 1 of 2) 13817 ENSMUSG00000087859.1 ENSMUSG00000087859 ENSMUST00000157234 Gm22796 snRNA Interval_5994 chr1 93775257 93775505 + 0 NA TTS (ENSMUSG00000026280.17) protein_coding-TTS (ENSMUSG00000026280.17) -8962 ENSMUSG00000026280.17 ENSMUSG00000026280 ENSMUST00000185754 Atg4b protein_coding Interval_106290 chr3 95163825 95164617 + 0 NA promoter-TSS (ENSMUSG00000038777.19) protein_coding-promoter-TSS (ENSMUSG00000038777.19) 3727 ENSMUSG00000038777.19 ENSMUSG00000038777 ENSMUST00000126597 Sema6c protein_coding Interval_164640 chr9 40229561 40229867 + 0 NA Intergenic Intergenic 37385 ENSMUSG00000025602.13 ENSMUSG00000025602 ENSMUST00000168832 Zfp202 protein_coding Interval_52964 chr14 52332286 52332506 + 0 NA Intergenic Intergenic -10381 ENSMUSG00000064755.1 ENSMUSG00000064755 ENSMUST00000082821 Gm26328 snRNA Interval_143532 chr7 12188706 12188961 + 0 NA promoter-TSS (ENSMUSG00000115744.1) protein_coding-promoter-TSS (ENSMUSG00000115744.1) -457 ENSMUSG00000115744.1 ENSMUSG00000115744 ENSMUST00000075053 Vmn1r80 protein_coding Interval_172818 chrX 50597195 50597766 + 0 NA intron (ENSMUSG00000085396.7, intron 10 of 19) processed_transcript-intron (ENSMUSG00000085396.7, intron 4 of 6) -32597 ENSMUSG00000085396.7 ENSMUSG00000085396 ENSMUST00000148530 Firre processed_transcript Interval_143125 chr6 149565551 149566645 + 0 NA promoter-TSS (ENSMUSG00000096299.3) lincRNA-promoter-TSS (ENSMUSG00000096299.3) -34 ENSMUSG00000096299.3 ENSMUSG00000096299 ENSMUST00000144085 Gm21814 lincRNA Interval_128296 chr5 112355645 112356618 + 0 NA promoter-TSS (ENSMUSG00000051503.2) protein_coding-promoter-TSS (ENSMUSG00000051503.2) -98 ENSMUSG00000051503.2 ENSMUSG00000051503 ENSMUST00000051117 Gm6583 protein_coding Interval_68515 chr16 78321605 78322283 + 0 NA intron (ENSMUSG00000022865.14, intron 2 of 3) protein_coding-intron (ENSMUSG00000022865.14, intron 1 of 6) -3263 ENSMUSG00000022865.14 ENSMUSG00000022865 ENSMUST00000231251 Cxadr protein_coding Interval_36008 chr12 33254939 33255790 + 0 NA intron (ENSMUSG00000020564.17, intron 3 of 12) protein_coding-intron (ENSMUSG00000020564.17, intron 3 of 11) -26510 ENSMUSG00000079143.3 ENSMUSG00000079143 ENSMUST00000155877 Atxn7l1os1 antisense Interval_1929 chr1 34632474 34632816 + 0 NA Intergenic Intergenic 3544 ENSMUSG00000104098.1 ENSMUSG00000104098 ENSMUST00000195095 AA619741 processed_pseudogene Interval_83699 chr19 3813750 3815852 + 0 NA exon (ENSMUSG00000045098.19, exon 12 of 12) protein_coding-exon (ENSMUSG00000045098.19, exon 12 of 12) 7588 ENSMUSG00000117779.1 ENSMUSG00000117779 ENSMUST00000236552 Gm19209 processed_pseudogene Interval_16677 chr10 66990638 66991121 + 0 NA Intergenic Intergenic -14196 ENSMUSG00000112925.1 ENSMUSG00000112925 ENSMUST00000218205 Gm31763 antisense Interval_30015 chr11 88703134 88703433 + 0 NA intron (ENSMUSG00000069769.13, intron 5 of 7) protein_coding-intron (ENSMUSG00000069769.13, intron 5 of 13) -15362 ENSMUSG00000087574.1 ENSMUSG00000087574 ENSMUST00000125967 C030037D09Rik lincRNA Interval_104464 chr3 65997552 65997762 + 0 NA Intergenic Intergenic -7904 ENSMUSG00000103641.1 ENSMUSG00000103641 ENSMUST00000194681 Gm19024 processed_pseudogene Interval_37872 chr12 72726299 72727717 + 0 NA Intergenic Intergenic 14574 ENSMUSG00000112989.1 ENSMUSG00000112989 ENSMUST00000221318 Gm48143 processed_pseudogene Interval_168952 chr9 89607190 89607782 + 0 NA intron (ENSMUSG00000039313.14, intron 1 of 3) protein_coding-intron (ENSMUSG00000039313.14, intron 1 of 3) -4095 ENSMUSG00000039313.14 ENSMUSG00000039313 ENSMUST00000191465 Minar1 protein_coding Interval_129589 chr5 121173075 121173569 + 0 NA intron (ENSMUSG00000043733.14, intron 1 of 14) protein_coding-intron (ENSMUSG00000043733.14, intron 1 of 15) 11674 ENSMUSG00000106940.1 ENSMUSG00000106940 ENSMUST00000200872 Gm42930 TEC Interval_33972 chr11 119759706 119760694 + 0 NA intron (ENSMUSG00000025583.15, intron 6 of 32) protein_coding-intron (ENSMUSG00000025583.15, intron 6 of 33) 13799 ENSMUSG00000088670.1 ENSMUSG00000088670 ENSMUST00000158045 Gm23663 snoRNA Interval_116325 chr4 109830978 109831189 + 0 NA intron (ENSMUSG00000010517.7, intron 9 of 18) protein_coding-intron (ENSMUSG00000010517.7, intron 9 of 18) -9702 ENSMUSG00000010517.7 ENSMUSG00000010517 ENSMUST00000155204 Faf1 protein_coding Interval_171084 chr9 114459132 114459425 + 0 NA intron (ENSMUSG00000045594.10, intron 12 of 14) protein_coding-intron (ENSMUSG00000045594.10, intron 13 of 15) 45638 ENSMUSG00000047898.7 ENSMUSG00000047898 ENSMUST00000215959 Ccr4 protein_coding Interval_166805 chr9 62807965 62808372 + 0 NA intron (ENSMUSG00000032244.9, intron 1 of 1) protein_coding-intron (ENSMUSG00000032244.9, intron 1 of 1) 3766 ENSMUSG00000032244.9 ENSMUSG00000032244 ENSMUST00000034775 Fem1b protein_coding Interval_23580 chr11 23519692 23521371 + 0 NA promoter-TSS (ENSMUSG00000020286.13) protein_coding-promoter-TSS (ENSMUSG00000020286.13) -1336 ENSMUSG00000020286.13 ENSMUSG00000020286 ENSMUST00000156629 1700093K21Rik protein_coding Interval_124983 chr5 63242378 63242884 + 0 NA Intergenic Intergenic 408263 ENSMUSG00000104868.1 ENSMUSG00000104868 ENSMUST00000067917 Gm9954 TEC Interval_73084 chr17 34684967 34686616 + 0 NA exon (ENSMUSG00000033327.18, exon 9 of 41) protein_coding-exon (ENSMUSG00000033327.18, exon 9 of 41) 2011 ENSMUSG00000095142.1 ENSMUSG00000095142 ENSMUST00000179962 Gm24389 snRNA Interval_49559 chr13 112957694 112958149 + 0 NA intron (ENSMUSG00000042426.6, intron 17 of 26) protein_coding-intron (ENSMUSG00000042426.6, intron 17 of 26) 20336 ENSMUSG00000114477.1 ENSMUSG00000114477 ENSMUST00000225929 Gm8795 processed_pseudogene Interval_123661 chr5 34356686 34357384 + 0 NA Intergenic Intergenic 5919 ENSMUSG00000029110.13 ENSMUSG00000029110 ENSMUST00000183265 Rnf4 protein_coding Interval_10886 chr1 176621943 176622181 + 0 NA Intergenic Intergenic 20496 ENSMUSG00000103471.1 ENSMUSG00000103471 ENSMUST00000193453 Gm17966 processed_pseudogene Interval_169546 chr9 99034947 99036366 + 0 NA promoter-TSS (ENSMUSG00000044860.9) protein_coding-promoter-TSS (ENSMUSG00000044860.9) 59 ENSMUSG00000044860.9 ENSMUSG00000044860 ENSMUST00000076730 Gm1123 protein_coding Interval_167595 chr9 70902346 70904238 + 0 NA intron (ENSMUSG00000032207.10, intron 1 of 8) protein_coding-intron (ENSMUSG00000032207.10, intron 1 of 8) -27196 ENSMUSG00000111631.1 ENSMUSG00000111631 ENSMUST00000215190 Gm32017 processed_transcript Interval_28424 chr11 75781988 75782357 + 0 NA intron (ENSMUSG00000020848.7, intron 2 of 8) protein_coding-intron (ENSMUSG00000020848.7, intron 2 of 8) -13048 ENSMUSG00000087059.7 ENSMUSG00000087059 ENSMUST00000139361 Gm12339 processed_transcript Interval_157728 chr8 72555375 72556398 + 0 NA Intergenic Intergenic -7616 ENSMUSG00000045248.6 ENSMUSG00000045248 ENSMUST00000058534 Med26 protein_coding Interval_18641 chr10 88761555 88761842 + 0 NA TTS (ENSMUSG00000004356.8) protein_coding-TTS (ENSMUSG00000004356.8) -30597 ENSMUSG00000069540.4 ENSMUSG00000069540 ENSMUST00000092231 Gm4925 transcribed_processed_pseudogene Interval_93019 chr2 69615429 69615640 + 0 NA Intergenic Intergenic -31696 ENSMUSG00000063145.10 ENSMUSG00000063145 ENSMUST00000127806 Bbs5 protein_coding Interval_44863 chr13 49179763 49180038 + 0 NA Intergenic Intergenic -10396 ENSMUSG00000037966.15 ENSMUSG00000037966 ENSMUST00000153819 Ninj1 protein_coding Interval_43377 chr13 29857316 29857781 + 0 NA Intergenic Intergenic -82735 ENSMUSG00000086893.1 ENSMUSG00000086893 ENSMUST00000144277 Gm11365 antisense Interval_138987 chr6 94040060 94040394 + 0 NA intron (ENSMUSG00000045095.16, intron 1 of 24) protein_coding-intron (ENSMUSG00000045095.16, intron 1 of 21) -127723 ENSMUSG00000045095.16 ENSMUSG00000045095 ENSMUST00000203034 Magi1 protein_coding Interval_46760 chr13 70012194 70012564 + 0 NA intron (ENSMUSG00000099639.6, intron 5 of 5) lincRNA-intron (ENSMUSG00000099639.6, intron 4 of 4) -4765 ENSMUSG00000113980.1 ENSMUSG00000113980 ENSMUST00000221449 Gm47655 processed_pseudogene Interval_48723 chr13 102295129 102295567 + 0 NA Intergenic Intergenic 66679 ENSMUSG00000084733.1 ENSMUSG00000084733 ENSMUST00000122784 Gm25808 misc_RNA Interval_43394 chr13 30025086 30025556 + 0 NA Intergenic Intergenic -33356 ENSMUSG00000085188.1 ENSMUSG00000085188 ENSMUST00000139576 Gm11368 lincRNA Interval_34695 chr12 8742770 8743936 + 0 NA promoter-TSS (ENSMUSG00000020594.14) protein_coding-promoter-TSS (ENSMUSG00000020594.14) 27828 ENSMUSG00000096940.1 ENSMUSG00000096940 ENSMUST00000181803 Gm4755 bidirectional_promoter_lncRNA Interval_92693 chr2 62685294 62685509 + 0 NA promoter-TSS (ENSMUSG00000026893.4) protein_coding-promoter-TSS (ENSMUSG00000026893.4) -797 ENSMUSG00000026893.4 ENSMUSG00000026893 ENSMUST00000148083 Gca protein_coding Interval_28827 chr11 78560371 78561009 + 0 NA TTS (ENSMUSG00000083176.1) processed_pseudogene-TTS (ENSMUSG00000083176.1) 910 ENSMUSG00000083176.1 ENSMUSG00000083176 ENSMUST00000122252 D11Bhm181e processed_pseudogene Interval_25973 chr11 53260201 53261336 + 0 NA exon (ENSMUSG00000020361.13, exon 19 of 19) protein_coding-exon (ENSMUSG00000020361.13, exon 19 of 19) 39643 ENSMUSG00000020361.13 ENSMUSG00000020361 ENSMUST00000151854 Hspa4 protein_coding Interval_18726 chr10 89714858 89716463 + 0 NA intron (ENSMUSG00000019948.4, intron 9 of 10) protein_coding-intron (ENSMUSG00000019948.4, intron 9 of 10) 16613 ENSMUSG00000019948.4 ENSMUSG00000019948 ENSMUST00000218568 Actr6 protein_coding Interval_15922 chr10 59310376 59310792 + 0 NA Intergenic Intergenic -12784 ENSMUSG00000019916.14 ENSMUSG00000019916 ENSMUST00000105466 P4ha1 protein_coding Interval_36522 chr12 48251949 48252165 + 0 NA Intergenic Intergenic -204523 ENSMUSG00000111984.1 ENSMUSG00000111984 ENSMUST00000218240 Gm46327 unprocessed_pseudogene Interval_173631 chrX 101285606 101285976 + 0 NA promoter-TSS (ENSMUSG00000079487.11) protein_coding-promoter-TSS (ENSMUSG00000079487.11) 3095 ENSMUSG00000079487.11 ENSMUSG00000079487 ENSMUST00000137664 Med12 protein_coding Interval_94613 chr2 92667947 92670235 + 0 NA Intergenic Intergenic 69384 ENSMUSG00000027221.5 ENSMUSG00000027221 ENSMUST00000065797 Chst1 protein_coding Interval_83884 chr19 5348442 5349526 + 0 NA promoter-TSS (ENSMUSG00000024846.6) protein_coding-promoter-TSS (ENSMUSG00000024846.6) 373 ENSMUSG00000024846.6 ENSMUSG00000024846 ENSMUST00000238111 Cst6 protein_coding Interval_73584 chr17 40795662 40795970 + 0 NA intron (ENSMUSG00000023930.14, intron 1 of 1) protein_coding-intron (ENSMUSG00000023930.14, intron 1 of 1) -1714 ENSMUSG00000023930.14 ENSMUSG00000023930 ENSMUST00000124399 Crisp2 protein_coding Interval_166430 chr9 59427629 59428125 + 0 NA intron (ENSMUSG00000025234.11, intron 3 of 13) protein_coding-intron (ENSMUSG00000025234.11, intron 3 of 11) 44356 ENSMUSG00000090516.1 ENSMUSG00000090516 ENSMUST00000171632 Rps11-ps1 processed_pseudogene Interval_106123 chr3 93417502 93417806 + 0 NA intron (ENSMUSG00000102476.1, intron 1 of 3) lincRNA-intron (ENSMUSG00000102476.1, intron 1 of 3) 3774 ENSMUSG00000104171.1 ENSMUSG00000104171 ENSMUST00000192475 Gm18296 processed_pseudogene Interval_47644 chr13 90646475 90646736 + 0 NA Intergenic Intergenic 12520 ENSMUSG00000103069.1 ENSMUSG00000103069 ENSMUST00000192217 Gm36966 TEC Interval_71376 chr17 22803511 22803850 + 0 NA intron (ENSMUSG00000117333.1, intron 1 of 1) processed_pseudogene-intron (ENSMUSG00000117333.1, intron 1 of 1) 4056 ENSMUSG00000117333.1 ENSMUSG00000117333 ENSMUST00000233975 Gm16386 processed_pseudogene Interval_118731 chr4 133422922 133424494 + 0 NA TTS (ENSMUSG00000028854.9) protein_coding-TTS (ENSMUSG00000028854.9) 7402 ENSMUSG00000028854.9 ENSMUSG00000028854 ENSMUST00000141658 Slc9a1 protein_coding Interval_61116 chr15 79329731 79331023 + 0 NA Intergenic Intergenic 16181 ENSMUSG00000092494.2 ENSMUSG00000092494 ENSMUST00000173178 Gm20420 antisense Interval_18169 chr10 83197932 83198297 + 0 NA Intergenic Intergenic -39987 ENSMUSG00000088270.1 ENSMUSG00000088270 ENSMUST00000157645 Gm23122 snRNA Interval_137089 chr6 67277333 67278138 + 0 NA TTS (ENSMUSG00000036371.6) protein_coding-TTS (ENSMUSG00000036371.6) 10730 ENSMUSG00000036371.6 ENSMUSG00000036371 ENSMUST00000204206 Serbp1 protein_coding Interval_103870 chr3 53888374 53888623 + 0 NA Intergenic Intergenic -24736 ENSMUSG00000027746.13 ENSMUSG00000027746 ENSMUST00000152414 Ufm1 protein_coding Interval_149310 chr7 97352745 97353426 + 0 NA Intergenic Intergenic 20758 ENSMUSG00000044952.5 ENSMUSG00000044952 ENSMUST00000054107 Kctd21 protein_coding Interval_75792 chr17 71410187 71410659 + 0 NA intron (ENSMUSG00000024054.14, intron 20 of 47) protein_coding-intron (ENSMUSG00000024054.14, intron 20 of 47) -11124 ENSMUSG00000117103.1 ENSMUSG00000117103 ENSMUST00000232892 Gm49916 processed_pseudogene Interval_32675 chr11 109576480 109576875 + 0 NA exon (ENSMUSG00000041895.15, exon 12 of 12) protein_coding-exon (ENSMUSG00000041895.15, exon 12 of 12) 35290 ENSMUSG00000041895.15 ENSMUSG00000041895 ENSMUST00000153738 Wipi1 protein_coding Interval_158165 chr8 79389204 79390077 + 0 NA intron (ENSMUSG00000031681.16, intron 1 of 5) protein_coding-intron (ENSMUSG00000031681.16, intron 1 of 3) -14508 ENSMUSG00000109945.1 ENSMUSG00000109945 ENSMUST00000211483 Gm45601 lincRNA Interval_144657 chr7 27366159 27366502 + 0 NA intron (ENSMUSG00000011751.16, intron 29 of 35) protein_coding-intron (ENSMUSG00000011751.16, intron 29 of 35) -8911 ENSMUSG00000092367.1 ENSMUSG00000092367 ENSMUST00000126587 Gm20479 protein_coding Interval_162029 chr8 124544848 124545981 + 0 NA exon (ENSMUSG00000031979.17, exon 13 of 13) protein_coding-exon (ENSMUSG00000031979.17, exon 13 of 13) 24292 ENSMUSG00000031980.10 ENSMUSG00000031980 ENSMUST00000063278 Agt protein_coding Interval_54319 chr14 67620963 67621408 + 0 NA Intergenic Intergenic -32393 ENSMUSG00000114514.1 ENSMUSG00000114514 ENSMUST00000224499 Gm47010 processed_pseudogene Interval_61160 chr15 79564220 79564982 + 0 NA intron (ENSMUSG00000022429.11, intron 3 of 3) protein_coding-intron (ENSMUSG00000022429.11, intron 13 of 13) -18046 ENSMUSG00000055065.7 ENSMUSG00000055065 ENSMUST00000229431 Ddx17 protein_coding Interval_66968 chr16 38901960 38902809 + 0 NA promoter-TSS (ENSMUSG00000022790.14) protein_coding-promoter-TSS (ENSMUSG00000022790.14) -124 ENSMUSG00000022790.14 ENSMUSG00000022790 ENSMUST00000210471 Igsf11 protein_coding Interval_148980 chr7 90642466 90642898 + 0 NA intron (ENSMUSG00000052572.19, intron 3 of 27) protein_coding-intron (ENSMUSG00000052572.19, intron 3 of 27) -166687 ENSMUSG00000030614.8 ENSMUSG00000030614 ENSMUST00000123622 Tmem126b protein_coding Interval_6734 chr1 119053176 119055315 + 0 NA promoter-TSS (ENSMUSG00000048402.14) protein_coding-promoter-TSS (ENSMUSG00000048402.14) -906 ENSMUSG00000048402.14 ENSMUSG00000048402 ENSMUST00000159678 Gli2 protein_coding Interval_66874 chr16 38248307 38249505 + 0 NA exon (ENSMUSG00000022809.4, exon 9 of 9) protein_coding-exon (ENSMUSG00000022809.4, exon 9 of 9) 40868 ENSMUSG00000022812.14 ENSMUSG00000022812 ENSMUST00000231437 Gsk3b protein_coding Interval_95854 chr2 117300149 117300389 + 0 NA intron (ENSMUSG00000027347.18, intron 5 of 16) protein_coding-intron (ENSMUSG00000027347.18, intron 5 of 16) 41487 ENSMUSG00000027349.5 ENSMUSG00000027349 ENSMUST00000143612 Fam98b protein_coding Interval_162646 chr9 7251960 7252292 + 0 NA Intergenic Intergenic -13747 ENSMUSG00000111615.1 ENSMUSG00000111615 ENSMUST00000215932 Gm47741 processed_pseudogene Interval_100151 chr2 167348312 167349882 + 0 NA promoter-TSS (ENSMUSG00000017929.13) protein_coding-promoter-TSS (ENSMUSG00000017929.13) -35242 ENSMUSG00000017929.13 ENSMUSG00000017929 ENSMUST00000133557 B4galt5 protein_coding Interval_160989 chr8 116692869 116693632 + 0 NA intron (ENSMUSG00000031758.10, intron 1 of 6) protein_coding-intron (ENSMUSG00000031758.10, intron 1 of 6) 39741 ENSMUSG00000031758.10 ENSMUSG00000031758 ENSMUST00000109102 Cdyl2 protein_coding Interval_119843 chr4 140427197 140427693 + 0 NA intron (ENSMUSG00000086437.2, intron 2 of 3) lincRNA-intron (ENSMUSG00000086437.2, intron 2 of 3) 4921 ENSMUSG00000086437.2 ENSMUSG00000086437 ENSMUST00000135716 Gm13021 lincRNA Interval_122476 chr5 23351970 23352408 + 0 NA Intergenic Intergenic -4915 ENSMUSG00000105254.1 ENSMUSG00000105254 ENSMUST00000199688 Gm42951 lincRNA Interval_30978 chr11 97556988 97557508 + 0 NA intron (ENSMUSG00000038453.17, intron 1 of 18) protein_coding-intron (ENSMUSG00000038453.17, intron 1 of 17) 17978 ENSMUSG00000038453.17 ENSMUSG00000038453 ENSMUST00000145845 Srcin1 protein_coding Interval_7659 chr1 132888818 132889177 + 0 NA intron (ENSMUSG00000026443.3, intron 1 of 1) protein_coding-intron (ENSMUSG00000026443.3, intron 1 of 1) 8642 ENSMUSG00000026443.3 ENSMUSG00000026443 ENSMUST00000159088 Lrrn2 protein_coding Interval_94058 chr2 83147820 83148094 + 0 NA Intergenic Intergenic -21741 ENSMUSG00000102082.1 ENSMUSG00000102082 ENSMUST00000191096 Gm28675 lincRNA Interval_28255 chr11 74710215 74711307 + 0 NA intron (ENSMUSG00000020745.15, intron 1 of 9) protein_coding-intron (ENSMUSG00000020745.15, intron 1 of 10) 13557 ENSMUSG00000020745.15 ENSMUSG00000020745 ENSMUST00000155493 Pafah1b1 protein_coding Interval_127850 chr5 108216618 108216906 + 0 NA intron (ENSMUSG00000056531.11, intron 26 of 28) protein_coding-intron (ENSMUSG00000056531.11, intron 26 of 28) -5328 ENSMUSG00000105591.1 ENSMUSG00000105591 ENSMUST00000199594 Gm43083 processed_pseudogene Interval_99788 chr2 164910730 164912333 + 0 NA exon (ENSMUSG00000039834.17, exon 1 of 28) protein_coding-exon (ENSMUSG00000039834.17, exon 1 of 28) 226 ENSMUSG00000039834.17 ENSMUSG00000039834 ENSMUST00000139247 Zfp335 protein_coding Interval_112939 chr4 46206537 46206802 + 0 NA Intergenic Intergenic -10365 ENSMUSG00000028329.13 ENSMUSG00000028329 ENSMUST00000130051 Xpa protein_coding Interval_163197 chr9 17940621 17940889 + 0 NA Intergenic Intergenic -81469 ENSMUSG00000111263.1 ENSMUSG00000111263 ENSMUST00000216198 Gm7680 processed_pseudogene Interval_36735 chr12 52747062 52747915 + 0 NA intron (ENSMUSG00000061603.8, intron 1 of 13) protein_coding-intron (ENSMUSG00000061603.8, intron 1 of 13) 5620 ENSMUSG00000112251.1 ENSMUSG00000112251 ENSMUST00000219288 Gm47488 processed_pseudogene Interval_173041 chrX 67380311 67380555 + 0 NA Intergenic Intergenic -77763 ENSMUSG00000086185.1 ENSMUSG00000086185 ENSMUST00000136834 1700036O09Rik lincRNA Interval_160176 chr8 106944020 106944911 + 0 NA intron (ENSMUSG00000041308.6, intron 1 of 6) protein_coding-intron (ENSMUSG00000041308.6, intron 1 of 5) 8715 ENSMUSG00000041308.6 ENSMUSG00000041308 ENSMUST00000212298 Sntb2 protein_coding Interval_38184 chr12 76243645 76245048 + 0 NA intron (ENSMUSG00000021056.8, intron 2 of 3) protein_coding-intron (ENSMUSG00000021056.8, intron 2 of 9) 10988 ENSMUSG00000112274.1 ENSMUSG00000112274 ENSMUST00000220205 Gm47525 bidirectional_promoter_lncRNA Interval_136150 chr6 51523586 51525076 + 0 NA promoter-TSS (ENSMUSG00000038301.15) protein_coding-promoter-TSS (ENSMUSG00000038301.15) -20192 ENSMUSG00000038301.15 ENSMUSG00000038301 ENSMUST00000149024 Snx10 protein_coding Interval_90773 chr2 32524002 32525029 + 0 NA promoter-TSS (ENSMUSG00000085017.1) lincRNA-promoter-TSS (ENSMUSG00000085017.1) -516 ENSMUSG00000085017.1 ENSMUSG00000085017 ENSMUST00000150621 Gm13412 lincRNA Interval_51516 chr14 29402148 29402355 + 0 NA intron (ENSMUSG00000021991.9, intron 4 of 37) protein_coding-intron (ENSMUSG00000021991.9, intron 4 of 37) -68516 ENSMUSG00000021991.9 ENSMUSG00000021991 ENSMUST00000224128 Cacna2d3 protein_coding Interval_8938 chr1 152520846 152521471 + 0 NA intron (ENSMUSG00000026482.13, intron 18 of 18) protein_coding-intron (ENSMUSG00000026482.13, intron 17 of 17) 31886 ENSMUSG00000026482.13 ENSMUSG00000026482 ENSMUST00000149536 Rgl1 protein_coding Interval_64921 chr16 17238861 17239310 + 0 NA intron (ENSMUSG00000116743.1, intron 1 of 3) protein_coding-intron (ENSMUSG00000050240.16, intron 1 of 2) 5421 ENSMUSG00000050240.16 ENSMUSG00000050240 ENSMUST00000232082 Hic2 protein_coding Interval_20231 chr10 116319170 116320278 + 0 NA exon (ENSMUSG00000020154.10, exon 8 of 8) protein_coding-exon (ENSMUSG00000020154.10, exon 8 of 8) -20859 ENSMUSG00000065086.1 ENSMUSG00000065086 ENSMUST00000083152 Gm26495 snoRNA Interval_144447 chr7 25208489 25209645 + 0 NA intron (ENSMUSG00000054499.9, intron 4 of 4) protein_coding-intron (ENSMUSG00000054499.9, intron 4 of 4) 8658 ENSMUSG00000098325.1 ENSMUSG00000098325 ENSMUST00000184632 Mir7048 miRNA Interval_30827 chr11 96735708 96736674 + 0 NA intron (ENSMUSG00000057058.16, intron 10 of 10) protein_coding-intron (ENSMUSG00000057058.16, intron 10 of 11) -30611 ENSMUSG00000085242.1 ENSMUSG00000085242 ENSMUST00000124865 Gm11537 antisense Interval_105422 chr3 86135311 86138222 + 0 NA Intergenic Intergenic 2092 ENSMUSG00000064984.1 ENSMUSG00000064984 ENSMUST00000083050 Snord73a snoRNA Interval_138547 chr6 89125552 89126815 + 0 NA Intergenic Intergenic -14811 ENSMUSG00000090254.7 ENSMUSG00000090254 ENSMUST00000160361 Gm1965 lincRNA Interval_80903 chr18 50032543 50033271 + 0 NA intron (ENSMUSG00000062210.13, intron 1 of 1) protein_coding-intron (ENSMUSG00000062210.13, intron 1 of 1) -13833 ENSMUSG00000062210.13 ENSMUSG00000062210 ENSMUST00000148159 Tnfaip8 protein_coding Interval_31603 chr11 101641251 101642588 + 0 NA TTS (ENSMUSG00000064702.1) snRNA-TTS (ENSMUSG00000064702.1) 171 ENSMUSG00000064702.1 ENSMUSG00000064702 ENSMUST00000082768 Gm24950 snRNA Interval_27523 chr11 68390683 68391228 + 0 NA intron (ENSMUSG00000020902.12, intron 2 of 7) protein_coding-intron (ENSMUSG00000020902.12, intron 2 of 7) -3943 ENSMUSG00000020902.12 ENSMUSG00000020902 ENSMUST00000135141 Ntn1 protein_coding Interval_49873 chr13 117458248 117458526 + 0 NA exon (ENSMUSG00000114358.1, exon 1 of 1) processed_pseudogene-exon (ENSMUSG00000114358.1, exon 1 of 1) 688 ENSMUSG00000114358.1 ENSMUSG00000114358 ENSMUST00000223786 Gm5200 processed_pseudogene Interval_19764 chr10 108559880 108560703 + 0 NA intron (ENSMUSG00000035864.14, intron 10 of 11) protein_coding-intron (ENSMUSG00000035864.14, intron 9 of 10) 77641 ENSMUSG00000112065.1 ENSMUSG00000112065 ENSMUST00000217917 Gm47466 processed_pseudogene Interval_96555 chr2 125659896 125661317 + 0 NA intron (ENSMUSG00000035109.14, intron 3 of 8) protein_coding-intron (ENSMUSG00000035109.14, intron 6 of 11) -12489 ENSMUSG00000091337.3 ENSMUSG00000091337 ENSMUST00000164756 Eid1 protein_coding Interval_87394 chr19 48413764 48414072 + 0 NA intron (ENSMUSG00000063434.6, intron 2 of 26) protein_coding-intron (ENSMUSG00000063434.6, intron 2 of 26) -16042 ENSMUSG00000063434.6 ENSMUSG00000063434 ENSMUST00000235967 Sorcs3 protein_coding Interval_167454 chr9 69478034 69478227 + 0 NA promoter-TSS (ENSMUSG00000032231.14) protein_coding-promoter-TSS (ENSMUSG00000032231.14) 1468 ENSMUSG00000086399.1 ENSMUSG00000086399 ENSMUST00000131093 Gm16144 antisense Interval_21233 chr10 127340907 127342716 + 0 NA promoter-TSS (ENSMUSG00000025407.7) protein_coding-promoter-TSS (ENSMUSG00000025407.7) -4756 ENSMUSG00000025407.7 ENSMUSG00000025407 ENSMUST00000218451 Gli1 protein_coding Interval_55462 chr14 87534982 87535181 + 0 NA intron (ENSMUSG00000022019.16, intron 12 of 13) protein_coding-intron (ENSMUSG00000022019.16, intron 12 of 13) -4018 ENSMUSG00000022019.16 ENSMUSG00000022019 ENSMUST00000227304 Tdrd3 protein_coding Interval_47101 chr13 75736826 75737403 + 0 NA intron (ENSMUSG00000001542.7, intron 2 of 3) protein_coding-intron (ENSMUSG00000001542.7, intron 2 of 11) 9835 ENSMUSG00000113041.1 ENSMUSG00000113041 ENSMUST00000222965 Gm48302 sense_intronic Interval_5816 chr1 92127161 92129028 + 0 NA intron (ENSMUSG00000026313.16, intron 3 of 4) protein_coding-intron (ENSMUSG00000026313.16, intron 1 of 25) 67600 ENSMUSG00000026313.16 ENSMUSG00000026313 ENSMUST00000212408 Hdac4 protein_coding Interval_137883 chr6 83135433 83136060 + 0 NA promoter-TSS (ENSMUSG00000034930.16) protein_coding-promoter-TSS (ENSMUSG00000034930.16) -10878 ENSMUSG00000030034.12 ENSMUSG00000030034 ENSMUST00000203085 Ino80b protein_coding Interval_157132 chr8 65982852 65983088 + 0 NA intron (ENSMUSG00000036469.16, intron 3 of 7) protein_coding-intron (ENSMUSG00000036469.16, intron 1 of 5) 19482 ENSMUSG00000064887.1 ENSMUSG00000064887 ENSMUST00000082953 Gm24205 snRNA Interval_21505 chr10 128980652 128982090 + 0 NA Intergenic Intergenic -8060 ENSMUSG00000069430.3 ENSMUSG00000069430 ENSMUST00000091996 Olfr9 protein_coding Interval_158876 chr8 87647959 87648412 + 0 NA Intergenic Intergenic 11528 ENSMUSG00000089301.1 ENSMUSG00000089301 ENSMUST00000158676 Gm24841 misc_RNA Interval_2383 chr1 38858006 38858353 + 0 NA Intergenic Intergenic -21805 ENSMUSG00000048814.11 ENSMUSG00000048814 ENSMUST00000191724 Lonrf2 protein_coding Interval_155040 chr8 25899019 25899791 + 0 NA intron (ENSMUSG00000031576.16, intron 16 of 26) protein_coding-intron (ENSMUSG00000031576.16, intron 16 of 26) 36969 ENSMUSG00000031576.16 ENSMUSG00000031576 ENSMUST00000126226 Kcnu1 protein_coding Interval_140884 chr6 122590960 122591811 + 0 NA intron (ENSMUSG00000040613.14, intron 2 of 6) protein_coding-intron (ENSMUSG00000040613.14, intron 3 of 7) 9053 ENSMUSG00000040613.14 ENSMUSG00000040613 ENSMUST00000204035 Apobec1 protein_coding Interval_68485 chr16 78067427 78067626 + 0 NA Intergenic Intergenic 16809 ENSMUSG00000092759.1 ENSMUSG00000092759 ENSMUST00000175018 Gm25025 miRNA Interval_26979 chr11 62039130 62040631 + 0 NA intron (ENSMUSG00000042331.13, intron 2 of 14) protein_coding-intron (ENSMUSG00000042331.13, intron 2 of 7) 21016 ENSMUSG00000042331.13 ENSMUSG00000042331 ENSMUST00000202179 Specc1 protein_coding Interval_16744 chr10 67875900 67876420 + 0 NA Intergenic Intergenic 36275 ENSMUSG00000037855.15 ENSMUSG00000037855 ENSMUST00000138543 Zfp365 protein_coding Interval_5115 chr1 85779777 85780585 + 0 NA intron (ENSMUSG00000100217.1, intron 2 of 3) lincRNA-intron (ENSMUSG00000100217.1, intron 2 of 3) -4532 ENSMUSG00000092932.2 ENSMUSG00000092932 ENSMUST00000175191 Gm22906 misc_RNA Interval_99093 chr2 157143915 157144543 + 0 NA Intergenic Intergenic -24591 ENSMUSG00000084113.1 ENSMUSG00000084113 ENSMUST00000121195 Gm14277 processed_pseudogene Interval_68378 chr16 75138763 75139643 + 0 NA Intergenic Intergenic -8030 ENSMUSG00000116698.1 ENSMUSG00000116698 ENSMUST00000232159 Gm49676 processed_pseudogene Interval_66486 chr16 34192905 34193715 + 0 NA intron (ENSMUSG00000061751.16, intron 22 of 30) protein_coding-intron (ENSMUSG00000061751.16, intron 25 of 59) -97282 ENSMUSG00000061751.16 ENSMUSG00000061751 ENSMUST00000132569 Kalrn protein_coding Interval_59438 chr15 53173491 53174029 + 0 NA intron (ENSMUSG00000061731.9, intron 1 of 10) protein_coding-intron (ENSMUSG00000061731.9, intron 1 of 10) -65892 ENSMUSG00000061731.9 ENSMUSG00000061731 ENSMUST00000140798 Ext1 protein_coding Interval_12912 chr10 8018444 8019314 + 0 NA intron (ENSMUSG00000112360.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000112360.1, intron 1 of 1) 2413 ENSMUSG00000112360.1 ENSMUSG00000112360 ENSMUST00000218165 Gm48614 lincRNA Interval_89146 chr2 17335719 17336101 + 0 NA Intergenic Intergenic 55098 ENSMUSG00000053702.16 ENSMUSG00000053702 ENSMUST00000130725 Nebl protein_coding Interval_25470 chr11 48791716 48791947 + 0 NA Intergenic Intergenic -8501 ENSMUSG00000020372.15 ENSMUSG00000020372 ENSMUST00000136849 Rack1 protein_coding Interval_89476 chr2 20898528 20898930 + 0 NA intron (ENSMUSG00000036591.16, intron 3 of 23) protein_coding-intron (ENSMUSG00000036591.16, intron 4 of 25) 32660 ENSMUSG00000085206.1 ENSMUSG00000085206 ENSMUST00000124322 Gm13380 sense_intronic Interval_81646 chr18 62813859 62814628 + 0 NA Intergenic Intergenic -57928 ENSMUSG00000041789.7 ENSMUSG00000041789 ENSMUST00000048109 2700046A07Rik lincRNA Interval_34209 chr11 121308202 121308713 + 0 NA exon (ENSMUSG00000039275.9, exon 9 of 9) protein_coding-exon (ENSMUSG00000039275.9, exon 9 of 9) 17713 ENSMUSG00000039275.9 ENSMUSG00000039275 ENSMUST00000151492 Foxk2 protein_coding Interval_122135 chr5 17974277 17974468 + 0 NA intron (ENSMUSG00000028777.8, intron 1 of 7) protein_coding-intron (ENSMUSG00000028777.8, intron 1 of 7) 11823 ENSMUSG00000028777.8 ENSMUSG00000028777 ENSMUST00000030561 Gnat3 protein_coding Interval_31429 chr11 100610541 100610782 + 0 NA intron (ENSMUSG00000014195.16, intron 1 of 13) protein_coding-intron (ENSMUSG00000014195.16, intron 1 of 13) 8970 ENSMUSG00000014195.16 ENSMUSG00000014195 ENSMUST00000132886 Dnajc7 protein_coding Interval_150644 chr7 113048109 113049041 + 0 NA Intergenic Intergenic 64672 ENSMUSG00000110207.1 ENSMUSG00000110207 ENSMUST00000210768 Gm33586 lincRNA Interval_169509 chr9 98628397 98629085 + 0 NA Intergenic Intergenic -27096 ENSMUSG00000032459.9 ENSMUSG00000032459 ENSMUST00000190150 Mrps22 protein_coding Interval_90719 chr2 32095425 32096060 + 0 NA promoter-TSS (ENSMUSG00000051373.5) protein_coding-promoter-TSS (ENSMUSG00000051373.5) -413 ENSMUSG00000051373.5 ENSMUSG00000051373 ENSMUST00000146502 Plpp7 protein_coding Interval_156450 chr8 48308678 48309019 + 0 NA intron (ENSMUSG00000031561.16, intron 12 of 26) protein_coding-intron (ENSMUSG00000031561.16, intron 13 of 28) -37863 ENSMUSG00000110480.1 ENSMUSG00000110480 ENSMUST00000212653 Gm32842 processed_pseudogene Interval_143816 chr7 16471746 16471921 + 0 NA promoter-TSS (ENSMUSG00000065893.1) rRNA-promoter-TSS (ENSMUSG00000065893.1) 20 ENSMUSG00000065893.1 ENSMUSG00000065893 ENSMUST00000083959 n-R5s151 rRNA Interval_101202 chr2 179441975 179444144 + 0 NA intron (ENSMUSG00000000305.12, intron 1 of 5) protein_coding-intron (ENSMUSG00000000305.12, intron 1 of 15) 28123 ENSMUSG00000039138.1 ENSMUSG00000039138 ENSMUST00000041998 4930591A17Rik lincRNA Interval_152245 chr7 130897757 130899003 + 0 NA intron (ENSMUSG00000040268.17, intron 6 of 10) protein_coding-intron (ENSMUSG00000040268.17, intron 4 of 9) -9888 ENSMUSG00000104914.1 ENSMUSG00000104914 ENSMUST00000198082 Mir7061 miRNA Interval_106171 chr3 94309617 94310701 + 0 NA promoter-TSS (ENSMUSG00000028145.9) protein_coding-promoter-TSS (ENSMUSG00000028145.9) 23 ENSMUSG00000028145.9 ENSMUSG00000028145 ENSMUST00000198494 Them4 protein_coding Interval_31476 chr11 100904614 100906102 + 0 NA promoter-TSS (ENSMUSG00000004040.16) protein_coding-promoter-TSS (ENSMUSG00000004040.16) -6051 ENSMUSG00000004040.16 ENSMUSG00000004040 ENSMUST00000130686 Stat3 protein_coding Interval_67572 chr16 51016217 51016442 + 0 NA Intergenic Intergenic -34801 ENSMUSG00000116706.1 ENSMUSG00000116706 ENSMUST00000231893 Gm32431 lincRNA Interval_73548 chr17 40264516 40265128 + 0 NA Intergenic Intergenic -22534 ENSMUSG00000025433.7 ENSMUSG00000025433 ENSMUST00000026499 Crisp3 protein_coding Interval_33980 chr11 119798900 119800124 + 0 NA intron (ENSMUSG00000025583.15, intron 9 of 32) protein_coding-intron (ENSMUSG00000025583.15, intron 9 of 33) 34853 ENSMUSG00000085081.1 ENSMUSG00000085081 ENSMUST00000127450 Rptoros antisense Interval_129571 chr5 121022996 121023194 + 0 NA Intergenic Intergenic -13015 ENSMUSG00000029608.10 ENSMUSG00000029608 ENSMUST00000200792 Rph3a protein_coding Interval_107711 chr3 111526139 111526430 + 0 NA Intergenic Intergenic -203427 ENSMUSG00000106100.1 ENSMUSG00000106100 ENSMUST00000199881 Gm9314 processed_pseudogene Interval_76375 chr17 79713354 79714099 + 0 NA promoter-TSS (ENSMUSG00000024087.4) protein_coding-promoter-TSS (ENSMUSG00000024087.4) -71 ENSMUSG00000024087.4 ENSMUSG00000024087 ENSMUST00000024894 Cyp1b1 protein_coding Interval_66164 chr16 32068579 32069181 + 0 NA intron (ENSMUSG00000022781.8, intron 1 of 14) protein_coding-intron (ENSMUSG00000022781.8, intron 1 of 14) 2970 ENSMUSG00000077460.1 ENSMUSG00000077460 ENSMUST00000104272 Gm26419 snoRNA Interval_85106 chr19 22889318 22889635 + 0 NA intron (ENSMUSG00000052387.16, intron 12 of 24) protein_coding-intron (ENSMUSG00000052387.16, intron 12 of 26) 138871 ENSMUSG00000065507.3 ENSMUSG00000065507 ENSMUST00000083573 Mir204 miRNA Interval_100284 chr2 168159043 168159623 + 0 NA intron (ENSMUSG00000118526.2, intron 7 of 7) unitary_pseudogene-intron (ENSMUSG00000118526.2, intron 7 of 7) -4820 ENSMUSG00000087648.1 ENSMUSG00000087648 ENSMUST00000129713 E130018N17Rik lincRNA Interval_50645 chr14 17220903 17221123 + 0 NA Intergenic Intergenic 99510 ENSMUSG00000114769.1 ENSMUSG00000114769 ENSMUST00000224880 Gm48312 processed_pseudogene Interval_36942 chr12 55497850 55498067 + 0 NA exon (ENSMUSG00000112348.1, exon 1 of 2) processed_transcript-exon (ENSMUSG00000112348.1, exon 1 of 2) 237 ENSMUSG00000112348.1 ENSMUSG00000112348 ENSMUST00000218356 Gm36634 processed_transcript Interval_76670 chr17 83339595 83341719 + 0 NA Intergenic Intergenic 52111 ENSMUSG00000094256.2 ENSMUSG00000094256 ENSMUST00000077420 Rpl21-ps7 processed_pseudogene Interval_118874 chr4 134202019 134202218 + 0 NA exon (ENSMUSG00000073747.2, exon 1 of 8) protein_coding-exon (ENSMUSG00000073747.2, exon 1 of 8) 886 ENSMUSG00000073747.2 ENSMUSG00000073747 ENSMUST00000097849 Zpld2 protein_coding Interval_95186 chr2 104614965 104615558 + 0 NA intron (ENSMUSG00000027176.8, intron 3 of 20) protein_coding-intron (ENSMUSG00000027176.8, intron 3 of 20) 24643 ENSMUSG00000027176.8 ENSMUSG00000027176 ENSMUST00000126539 Cstf3 protein_coding Interval_24446 chr11 33310543 33310795 + 0 NA intron (ENSMUSG00000040594.19, intron 7 of 9) protein_coding-intron (ENSMUSG00000040594.19, intron 18 of 27) -33932 ENSMUSG00000098456.1 ENSMUSG00000098456 ENSMUST00000183831 Gm12117 protein_coding Interval_126613 chr5 90930444 90931986 + 0 NA promoter-TSS (ENSMUSG00000029376.8) protein_coding-promoter-TSS (ENSMUSG00000029376.8) 98 ENSMUSG00000029376.8 ENSMUSG00000029376 ENSMUST00000201851 Mthfd2l protein_coding Interval_1925 chr1 34587243 34587614 + 0 NA exon (ENSMUSG00000045174.10, exon 2 of 2) protein_coding-exon (ENSMUSG00000045174.10, exon 2 of 2) -7717 ENSMUSG00000045815.4 ENSMUSG00000045815 ENSMUST00000062557 1700101I19Rik antisense Interval_129543 chr5 120815887 120816388 + 0 NA intron (ENSMUSG00000029605.16, intron 2 of 5) polymorphic_pseudogene-intron (ENSMUSG00000029605.16, intron 2 of 8) 3499 ENSMUSG00000029605.16 ENSMUSG00000029605 ENSMUST00000183291 Oas1b polymorphic_pseudogene Interval_35535 chr12 24592882 24593591 + 0 NA intron (ENSMUSG00000020656.16, intron 6 of 13) protein_coding-intron (ENSMUSG00000020656.16, intron 6 of 13) 12517 ENSMUSG00000020656.16 ENSMUSG00000020656 ENSMUST00000020985 Grhl1 protein_coding Interval_25812 chr11 51875843 51876455 + 0 NA Intergenic Intergenic -19024 ENSMUSG00000020387.15 ENSMUSG00000020387 ENSMUST00000151277 Jade2 protein_coding Interval_65762 chr16 28018119 28018584 + 0 NA Intergenic Intergenic -48006 ENSMUSG00000116978.1 ENSMUSG00000116978 ENSMUST00000231476 Gm49765 processed_pseudogene Interval_130695 chr5 129849063 129849366 + 0 NA intron (ENSMUSG00000025538.15, intron 1 of 3) protein_coding-intron (ENSMUSG00000025538.15, intron 1 of 9) 2203 ENSMUSG00000025538.15 ENSMUSG00000025538 ENSMUST00000122826 Sumf2 protein_coding Interval_18102 chr10 82589667 82590707 + 0 NA Intergenic Intergenic 4761 ENSMUSG00000094683.2 ENSMUSG00000094683 ENSMUST00000177652 Ap3m1-ps processed_pseudogene Interval_70075 chr17 5144189 5144496 + 0 NA intron (ENSMUSG00000069729.14, intron 4 of 19) protein_coding-intron (ENSMUSG00000069729.14, intron 4 of 18) -32232 ENSMUSG00000081783.2 ENSMUSG00000081783 ENSMUST00000122283 Gm15599 processed_pseudogene Interval_38561 chr12 80141282 80141823 + 0 NA Intergenic Intergenic -8956 ENSMUSG00000097729.2 ENSMUSG00000097729 ENSMUST00000180643 2310015A10Rik processed_transcript Interval_50641 chr14 17086028 17086765 + 0 NA Intergenic Intergenic -19165 ENSMUSG00000114296.1 ENSMUSG00000114296 ENSMUST00000225472 Gm18927 processed_pseudogene Interval_103155 chr3 36059925 36060464 + 0 NA Intergenic Intergenic -6647 ENSMUSG00000047696.16 ENSMUSG00000047696 ENSMUST00000196964 Ccdc144b protein_coding Interval_151730 chr7 126291738 126293549 + 0 NA TTS (ENSMUSG00000042978.11) protein_coding-TTS (ENSMUSG00000042978.11) 7273 ENSMUSG00000066180.5 ENSMUSG00000066180 ENSMUST00000084598 Gm10155 processed_pseudogene Interval_3187 chr1 54575649 54576194 + 0 NA Intergenic Intergenic 9218 ENSMUSG00000101130.1 ENSMUSG00000101130 ENSMUST00000185933 Gm19637 processed_pseudogene Interval_155535 chr8 34154235 34155182 + 0 NA promoter-TSS (ENSMUSG00000031532.7) protein_coding-promoter-TSS (ENSMUSG00000031532.7) 145 ENSMUSG00000031532.7 ENSMUSG00000031532 ENSMUST00000211637 Saraf protein_coding Interval_144632 chr7 27248966 27249570 + 0 NA promoter-TSS (ENSMUSG00000003762.13) protein_coding-promoter-TSS (ENSMUSG00000003762.13) -2908 ENSMUSG00000108378.1 ENSMUSG00000108378 ENSMUST00000152342 Gm44641 processed_transcript Interval_172853 chrX 52155636 52155854 + 0 NA intron (ENSMUSG00000031119.4, intron 1 of 8) protein_coding-intron (ENSMUSG00000031119.4, intron 1 of 8) 9507 ENSMUSG00000031119.4 ENSMUSG00000031119 ENSMUST00000033450 Gpc4 protein_coding Interval_158502 chr8 84110190 84111128 + 0 NA Intergenic Intergenic -5891 ENSMUSG00000037103.8 ENSMUSG00000037103 ENSMUST00000210625 Dcaf15 protein_coding Interval_157206 chr8 67817753 67818405 + 0 NA exon (ENSMUSG00000030465.19, exon 1 of 8) protein_coding-exon (ENSMUSG00000030465.19, exon 1 of 8) -138690 ENSMUSG00000087266.2 ENSMUSG00000087266 ENSMUST00000127631 Gm15991 antisense Interval_143008 chr6 148323029 148324316 + 0 NA intron (ENSMUSG00000030306.14, intron 8 of 16) protein_coding-intron (ENSMUSG00000030306.14, intron 8 of 19) -31038 ENSMUSG00000063171.4 ENSMUSG00000063171 ENSMUST00000204242 Rps4l transcribed_processed_pseudogene Interval_33901 chr11 119267651 119268940 + 0 NA intron (ENSMUSG00000025579.14, intron 1 of 19) protein_coding-intron (ENSMUSG00000025579.14, intron 1 of 19) -6561 ENSMUSG00000025579.14 ENSMUSG00000025579 ENSMUST00000138510 Gaa protein_coding Interval_109793 chr3 147122999 147123435 + 0 NA intron (ENSMUSG00000103334.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000103334.1, intron 1 of 1) 27033 ENSMUSG00000103334.1 ENSMUSG00000103334 ENSMUST00000193142 Gm29771 lincRNA Interval_52425 chr14 46104344 46104628 + 0 NA Intergenic Intergenic 20458 ENSMUSG00000044285.8 ENSMUSG00000044285 ENSMUST00000111388 Ubb-ps transcribed_processed_pseudogene Interval_28830 chr11 78587389 78587597 + 0 NA intron (ENSMUSG00000017376.15, intron 5 of 10) protein_coding-intron (ENSMUSG00000017376.15, intron 5 of 10) -1938 ENSMUSG00000082110.1 ENSMUSG00000082110 ENSMUST00000119052 Gm11196 processed_pseudogene Interval_144707 chr7 27649642 27650195 + 0 NA exon (ENSMUSG00000108592.2, exon 2 of 2) lincRNA-exon (ENSMUSG00000108592.2, exon 2 of 2) 1065 ENSMUSG00000108592.2 ENSMUSG00000108592 ENSMUST00000238805 Gm38973 lincRNA Interval_43753 chr13 36033676 36033862 + 0 NA intron (ENSMUSG00000114407.1, intron 1 of 1) protein_coding-intron (ENSMUSG00000046573.7, intron 2 of 2) 38316 ENSMUSG00000114857.1 ENSMUSG00000114857 ENSMUST00000225071 Gm48770 antisense Interval_141545 chr6 129074922 129075885 + 0 NA Intergenic Intergenic 25510 ENSMUSG00000030155.7 ENSMUSG00000030155 ENSMUST00000032258 Clec2e protein_coding Interval_39159 chr12 85509857 85510562 + 0 NA Intergenic Intergenic -19389 ENSMUSG00000114163.1 ENSMUSG00000114163 ENSMUST00000220590 Gm32296 lincRNA Interval_126917 chr5 97111159 97111898 + 0 NA promoter-TSS (ENSMUSG00000055725.11) protein_coding-promoter-TSS (ENSMUSG00000055725.11) -85 ENSMUSG00000055725.11 ENSMUSG00000055725 ENSMUST00000132127 Paqr3 protein_coding Interval_84768 chr19 16418960 16419627 + 0 NA exon (ENSMUSG00000118033.1, exon 3 of 4) lincRNA-exon (ENSMUSG00000118033.1, exon 3 of 4) 3536 ENSMUSG00000118033.1 ENSMUSG00000118033 ENSMUST00000235262 Gm50362 lincRNA Interval_147952 chr7 75830176 75831188 + 0 NA Intergenic Intergenic -17715 ENSMUSG00000055652.14 ENSMUSG00000055652 ENSMUST00000205887 Klhl25 protein_coding Interval_171710 chr9 120397182 120397355 + 0 NA intron (ENSMUSG00000041794.13, intron 2 of 8) protein_coding-intron (ENSMUSG00000041794.13, intron 3 of 16) 10959 ENSMUSG00000041794.13 ENSMUSG00000041794 ENSMUST00000129168 Myrip protein_coding Interval_88744 chr2 10187342 10187632 + 0 NA intron (ENSMUSG00000025780.7, intron 4 of 13) protein_coding-intron (ENSMUSG00000025780.7, intron 4 of 13) 33916 ENSMUSG00000025780.7 ENSMUSG00000025780 ENSMUST00000026886 Itih5 protein_coding Interval_108493 chr3 127639607 127641834 + 0 NA Intergenic Intergenic 7585 ENSMUSG00000027967.8 ENSMUSG00000027967 ENSMUST00000029587 Neurog2 protein_coding Interval_144672 chr7 27437695 27437977 + 0 NA intron (ENSMUSG00000011751.16, intron 2 of 35) protein_coding-intron (ENSMUSG00000011751.16, intron 2 of 35) 4700 ENSMUSG00000108416.1 ENSMUSG00000108416 ENSMUST00000138087 Gm44924 processed_transcript Interval_13215 chr10 13125270 13126492 + 0 NA TTS (ENSMUSG00000019817.18) protein_coding-TTS (ENSMUSG00000019817.18) -34064 ENSMUSG00000098635.1 ENSMUSG00000098635 ENSMUST00000185060 Gm27741 misc_RNA Interval_74182 chr17 46933513 46934161 + 0 NA promoter-TSS (ENSMUSG00000023977.15) protein_coding-promoter-TSS (ENSMUSG00000023977.15) 18318 ENSMUSG00000023977.15 ENSMUSG00000023977 ENSMUST00000225599 Ubr2 protein_coding Interval_8589 chr1 143612459 143612872 + 0 NA intron (ENSMUSG00000026361.9, intron 6 of 7) protein_coding-intron (ENSMUSG00000026361.9, intron 15 of 16) -27999 ENSMUSG00000033849.3 ENSMUSG00000033849 ENSMUST00000038252 B3galt2 protein_coding Interval_113706 chr4 57769996 57771044 + 0 NA intron (ENSMUSG00000038729.24, intron 2 of 2) protein_coding-intron (ENSMUSG00000038729.24, intron 2 of 2) -6619 ENSMUSG00000073846.4 ENSMUSG00000073846 ENSMUST00000154462 Gm12526 processed_transcript Interval_121819 chr5 8462676 8463335 + 0 NA Intergenic Intergenic 40147 ENSMUSG00000054099.11 ENSMUSG00000054099 ENSMUST00000198119 Slc25a40 protein_coding Interval_72367 chr17 29438390 29438653 + 0 NA intron (ENSMUSG00000117427.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000117427.1, intron 1 of 3) -3764 ENSMUSG00000117575.1 ENSMUSG00000117575 ENSMUST00000234181 Gm36486 processed_transcript Interval_139756 chr6 108417534 108417916 + 0 NA promoter-TSS (ENSMUSG00000030102.11) protein_coding-promoter-TSS (ENSMUSG00000030102.11) 30291 ENSMUSG00000030102.11 ENSMUSG00000030102 ENSMUST00000205005 Itpr1 protein_coding Interval_85801 chr19 31801972 31802591 + 0 NA Intergenic Intergenic -66500 ENSMUSG00000052595.8 ENSMUSG00000052595 ENSMUST00000225165 A1cf protein_coding Interval_144181 chr7 19829488 19830024 + 0 NA Intergenic Intergenic 13203 ENSMUSG00000087593.1 ENSMUSG00000087593 ENSMUST00000137373 Gm16174 antisense Interval_60990 chr15 78554611 78555395 + 0 NA promoter-TSS (ENSMUSG00000068226.3) processed_pseudogene-promoter-TSS (ENSMUSG00000068226.3) -155 ENSMUSG00000068226.3 ENSMUSG00000068226 ENSMUST00000180449 Gm6723 processed_pseudogene Interval_171344 chr9 116549432 116549878 + 0 NA Intergenic Intergenic 218487 ENSMUSG00000110752.1 ENSMUSG00000110752 ENSMUST00000217456 D730003K21Rik lincRNA Interval_47968 chr13 94732813 94733053 + 0 NA Intergenic Intergenic -19337 ENSMUSG00000113006.1 ENSMUSG00000113006 ENSMUST00000221997 Gm48316 processed_pseudogene Interval_163114 chr9 15365379 15366381 + 0 NA Intergenic Intergenic -15487 ENSMUSG00000111763.1 ENSMUSG00000111763 ENSMUST00000217087 Gm34973 lincRNA Interval_164465 chr9 37232267 37233300 + 0 NA intron (ENSMUSG00000032122.15, intron 5 of 5) protein_coding-intron (ENSMUSG00000032122.15, intron 17 of 17) 2371 ENSMUSG00000032122.15 ENSMUSG00000032122 ENSMUST00000162018 Slc37a2 protein_coding Interval_99840 chr2 165241503 165241890 + 0 NA Intergenic Intergenic 28480 ENSMUSG00000087800.1 ENSMUSG00000087800 ENSMUST00000157175 Gm25569 snoRNA Interval_2287 chr1 37685233 37685470 + 0 NA intron (ENSMUSG00000026090.16, intron 1 of 3) protein_coding-intron (ENSMUSG00000026090.16, intron 1 of 3) 11313 ENSMUSG00000102650.1 ENSMUSG00000102650 ENSMUST00000192480 Gm19863 TEC Interval_100324 chr2 168402751 168403387 + 0 NA Intergenic Intergenic 15505 ENSMUSG00000082239.1 ENSMUSG00000082239 ENSMUST00000119539 Gm14234 processed_pseudogene Interval_172950 chrX 57392112 57393601 + 0 NA promoter-TSS (ENSMUSG00000031134.16) protein_coding-promoter-TSS (ENSMUSG00000031134.16) 164 ENSMUSG00000031134.16 ENSMUSG00000031134 ENSMUST00000133346 Rbmx protein_coding Interval_105257 chr3 84270024 84270841 + 0 NA intron (ENSMUSG00000027993.16, intron 1 of 4) protein_coding-intron (ENSMUSG00000027993.16, intron 1 of 11) 36445 ENSMUSG00000027993.16 ENSMUSG00000027993 ENSMUST00000197845 Trim2 protein_coding Interval_155876 chr8 40559044 40560005 + 0 NA intron (ENSMUSG00000039431.16, intron 10 of 11) protein_coding-intron (ENSMUSG00000039431.16, intron 10 of 14) 16100 ENSMUSG00000031600.11 ENSMUSG00000031600 ENSMUST00000238628 Vps37a protein_coding Interval_116591 chr4 115936093 115936889 + 0 NA intron (ENSMUSG00000028707.15, intron 1 of 4) protein_coding-intron (ENSMUSG00000028707.15, intron 1 of 4) 3435 ENSMUSG00000028707.15 ENSMUSG00000028707 ENSMUST00000084338 Dmbx1 protein_coding Interval_11459 chr1 182009748 182009945 + 0 NA intron (ENSMUSG00000022995.16, intron 1 of 13) protein_coding-intron (ENSMUSG00000022995.16, intron 1 of 14) -2160 ENSMUSG00000102760.1 ENSMUSG00000102760 ENSMUST00000191734 Gm37258 TEC Interval_38345 chr12 77613507 77613803 + 0 NA Intergenic Intergenic 11354 ENSMUSG00000112003.1 ENSMUSG00000112003 ENSMUST00000219894 Gm4864 processed_pseudogene Interval_88420 chr2 4976987 4978732 + 0 NA intron (ENSMUSG00000026668.10, intron 2 of 2) protein_coding-intron (ENSMUSG00000026668.10, intron 2 of 3) 1675 ENSMUSG00000026668.10 ENSMUSG00000026668 ENSMUST00000195688 Ucma protein_coding Interval_143201 chr7 4454090 4454608 + 0 NA intron (ENSMUSG00000091177.2, intron 1 of 1) antisense-intron (ENSMUSG00000091177.2, intron 1 of 1) -6366 ENSMUSG00000006154.13 ENSMUSG00000006154 ENSMUST00000164987 Eps8l1 protein_coding Interval_139265 chr6 97718185 97719002 + 0 NA Intergenic Intergenic -11846 ENSMUSG00000094510.1 ENSMUSG00000094510 ENSMUST00000180099 Gm24565 snRNA Interval_130933 chr5 134129780 134129965 + 0 NA intron (ENSMUSG00000015944.9, intron 2 of 8) protein_coding-intron (ENSMUSG00000015944.9, intron 2 of 8) 29867 ENSMUSG00000015944.9 ENSMUSG00000015944 ENSMUST00000140240 Castor2 protein_coding Interval_10195 chr1 167034393 167035091 + 0 NA intron (ENSMUSG00000060568.14, intron 1 of 2) protein_coding-intron (ENSMUSG00000060568.14, intron 1 of 2) 33325 ENSMUSG00000060568.14 ENSMUSG00000060568 ENSMUST00000128373 Fam78b protein_coding Interval_33254 chr11 115490635 115492077 + 0 NA promoter-TSS (ENSMUSG00000020736.12) protein_coding-promoter-TSS (ENSMUSG00000020736.12) 15 ENSMUSG00000020736.12 ENSMUSG00000020736 ENSMUST00000130668 Nt5c protein_coding Interval_166298 chr9 58152314 58152543 + 0 NA intron (ENSMUSG00000032327.14, intron 17 of 18) protein_coding-intron (ENSMUSG00000032327.14, intron 17 of 18) 18353 ENSMUSG00000032327.14 ENSMUSG00000032327 ENSMUST00000134450 Stra6 protein_coding Interval_92322 chr2 58737684 58738185 + 0 NA intron (ENSMUSG00000026839.17, intron 1 of 7) protein_coding-intron (ENSMUSG00000026839.17, intron 1 of 7) -2705 ENSMUSG00000080985.1 ENSMUSG00000080985 ENSMUST00000120476 Gm13559 processed_pseudogene Interval_12943 chr10 8528908 8530363 + 0 NA Intergenic Intergenic -113299 ENSMUSG00000077582.1 ENSMUSG00000077582 ENSMUST00000104394 Gm24374 snRNA Interval_174648 chrX 162024690 162025765 + 0 NA intron (ENSMUSG00000059493.13, intron 1 of 8) protein_coding-intron (ENSMUSG00000059493.13, intron 1 of 7) -44230 ENSMUSG00000065828.1 ENSMUSG00000065828 ENSMUST00000083894 Gm26317 snRNA Interval_145454 chr7 34858724 34859392 + 0 NA Intergenic Intergenic 84927 ENSMUSG00000077469.1 ENSMUSG00000077469 ENSMUST00000104281 Gm25922 snoRNA Interval_74380 chr17 49761298 49762577 + 0 NA intron (ENSMUSG00000023999.14, intron 13 of 22) protein_coding-intron (ENSMUSG00000023999.14, intron 13 of 22) 59888 ENSMUSG00000090012.1 ENSMUSG00000090012 ENSMUST00000159971 Gm16555 antisense Interval_51707 chr14 31539469 31540135 + 0 NA intron (ENSMUSG00000057606.14, intron 11 of 16) protein_coding-intron (ENSMUSG00000057606.14, intron 11 of 16) -2544 ENSMUSG00000089241.1 ENSMUSG00000089241 ENSMUST00000158616 Gm24057 misc_RNA Interval_118653 chr4 133004919 133005862 + 0 NA Intergenic Intergenic -6448 ENSMUSG00000037692.14 ENSMUSG00000037692 ENSMUST00000148518 Ahdc1 protein_coding Interval_6934 chr1 120993490 120994665 + 0 NA Intergenic Intergenic -93394 ENSMUSG00000097881.7 ENSMUSG00000097881 ENSMUST00000181183 Celrr lincRNA Interval_44890 chr13 49399954 49400390 + 0 NA Intergenic Intergenic 17083 ENSMUSG00000037933.16 ENSMUSG00000037933 ENSMUST00000220723 Bicd2 protein_coding Interval_57853 chr15 23297209 23298093 + 0 NA intron (ENSMUSG00000040420.15, intron 3 of 10) protein_coding-intron (ENSMUSG00000040420.15, intron 4 of 9) 116806 ENSMUSG00000115560.1 ENSMUSG00000115560 ENSMUST00000226326 Gm49191 antisense Interval_155943 chr8 41178325 41178566 + 0 NA Intergenic Intergenic 36708 ENSMUSG00000031594.9 ENSMUSG00000031594 ENSMUST00000134510 Fgl1 protein_coding Interval_151171 chr7 118968536 118969438 + 0 NA exon (ENSMUSG00000109517.1, exon 1 of 1) antisense-exon (ENSMUSG00000109517.1, exon 1 of 1) 699 ENSMUSG00000109517.1 ENSMUSG00000109517 ENSMUST00000208287 Gm44763 antisense Interval_19780 chr10 108734125 108734477 + 0 NA intron (ENSMUSG00000035864.14, intron 3 of 7) protein_coding-intron (ENSMUSG00000035864.14, intron 3 of 10) -34141 ENSMUSG00000112039.1 ENSMUSG00000112039 ENSMUST00000218023 Gm5136 protein_coding Interval_159170 chr8 91348651 91348977 + 0 NA intron (ENSMUSG00000055932.15, intron 1 of 6) protein_coding-intron (ENSMUSG00000055932.15, intron 1 of 8) 35200 ENSMUSG00000055932.15 ENSMUSG00000055932 ENSMUST00000140276 Fto protein_coding Interval_68535 chr16 78480559 78480790 + 0 NA promoter-TSS (ENSMUSG00000116539.1) TEC-promoter-TSS (ENSMUSG00000116539.1) -135 ENSMUSG00000116539.1 ENSMUSG00000116539 ENSMUST00000231464 Gm49603 TEC Interval_162554 chr9 4258988 4260979 + 0 NA Intergenic Intergenic 11254 ENSMUSG00000080511.1 ENSMUSG00000080511 ENSMUST00000116861 Gm22195 miRNA Interval_142618 chr6 144318690 144320715 + 0 NA intron (ENSMUSG00000041540.16, intron 4 of 6) protein_coding-intron (ENSMUSG00000041540.16, intron 4 of 13) -110134 ENSMUSG00000041540.16 ENSMUSG00000041540 ENSMUST00000150087 Sox5 protein_coding Interval_106733 chr3 100180548 100181447 + 0 NA intron (ENSMUSG00000027865.10, intron 5 of 12) protein_coding-intron (ENSMUSG00000027865.10, intron 5 of 13) -18600 ENSMUSG00000033285.15 ENSMUSG00000033285 ENSMUST00000197602 Wdr3 protein_coding Interval_113789 chr4 58613887 58614753 + 0 NA Intergenic Intergenic 3262 ENSMUSG00000083145.1 ENSMUSG00000083145 ENSMUST00000118040 Gm12579 processed_pseudogene Interval_114034 chr4 62640905 62641462 + 0 NA intron (ENSMUSG00000059810.18, intron 2 of 9) protein_coding-intron (ENSMUSG00000059810.18, intron 17 of 19) -7471 ENSMUSG00000085177.1 ENSMUSG00000085177 ENSMUST00000130206 Gm11209 antisense Interval_69465 chr16 93723128 93723427 + 0 NA intron (ENSMUSG00000022946.10, intron 1 of 1) protein_coding-intron (ENSMUSG00000022946.10, intron 2 of 36) 40018 ENSMUSG00000022947.8 ENSMUSG00000022947 ENSMUST00000231302 Cbr3 protein_coding Interval_80637 chr18 44931526 44931739 + 0 NA Intergenic Intergenic 76397 ENSMUSG00000034653.11 ENSMUSG00000034653 ENSMUST00000202176 Ythdc2 protein_coding Interval_128636 chr5 114427978 114428407 + 0 NA Intergenic Intergenic 15800 ENSMUSG00000029575.17 ENSMUSG00000029575 ENSMUST00000123256 Mmab protein_coding Interval_68363 chr16 74352821 74353050 + 0 NA intron (ENSMUSG00000052516.19, intron 1 of 21) protein_coding-intron (ENSMUSG00000052516.19, intron 1 of 25) -10868 ENSMUSG00000104758.1 ENSMUSG00000104758 ENSMUST00000199719 Mir691 miRNA Interval_152542 chr7 134032034 134034143 + 0 NA intron (ENSMUSG00000054555.11, intron 3 of 6) protein_coding-intron (ENSMUSG00000054555.11, intron 3 of 22) 67190 ENSMUSG00000108478.1 ENSMUSG00000108478 ENSMUST00000206856 Gm19514 TEC Interval_158909 chr8 87879831 87880048 + 0 NA intron (ENSMUSG00000045333.15, intron 2 of 3) protein_coding-intron (ENSMUSG00000045333.15, intron 1 of 6) 73923 ENSMUSG00000045333.15 ENSMUSG00000045333 ENSMUST00000173092 Zfp423 protein_coding Interval_127083 chr5 100171104 100172294 + 0 NA Intergenic Intergenic -12129 ENSMUSG00000050640.16 ENSMUSG00000050640 ENSMUST00000139520 Tmem150c protein_coding Interval_49387 chr13 111601516 111601881 + 0 NA intron (ENSMUSG00000086649.1, intron 2 of 3) processed_transcript-intron (ENSMUSG00000086649.1, intron 2 of 3) -8087 ENSMUSG00000096842.1 ENSMUSG00000096842 ENSMUST00000179668 Gm10736 processed_pseudogene Interval_56035 chr14 105008785 105009222 + 0 NA Intergenic Intergenic -34447 ENSMUSG00000115195.1 ENSMUSG00000115195 ENSMUST00000227910 Gm5671 processed_pseudogene Interval_165807 chr9 53323801 53324222 + 0 NA intron (ENSMUSG00000034584.3, intron 1 of 5) protein_coding-intron (ENSMUSG00000034584.3, intron 1 of 5) -17178 ENSMUSG00000034584.3 ENSMUSG00000034584 ENSMUST00000139096 Exph5 protein_coding Interval_173815 chrX 104856657 104857664 + 0 NA exon (ENSMUSG00000031224.6, exon 1 of 1) protein_coding-exon (ENSMUSG00000031224.6, exon 1 of 1) 107 ENSMUSG00000031224.6 ENSMUSG00000031224 ENSMUST00000033575 Magee2 protein_coding Interval_52609 chr14 47878183 47879457 + 0 NA Intergenic Intergenic -20031 ENSMUSG00000115609.1 ENSMUSG00000115609 ENSMUST00000226469 4930447J18Rik lincRNA Interval_1392 chr1 21266416 21267027 + 0 NA intron (ENSMUSG00000099343.1, intron 1 of 1) antisense-intron (ENSMUSG00000099343.1, intron 1 of 1) 4872 ENSMUSG00000099343.1 ENSMUSG00000099343 ENSMUST00000185842 Gm28836 antisense Interval_4933 chr1 82787284 82788292 + 0 NA Intergenic Intergenic -10578 ENSMUSG00000099771.1 ENSMUSG00000099771 ENSMUST00000186121 Gm19257 processed_pseudogene Interval_18072 chr10 82101090 82102196 + 0 NA intron (ENSMUSG00000112160.1, intron 1 of 3) protein_coding-intron (ENSMUSG00000112160.1, intron 1 of 3) 18290 ENSMUSG00000112160.1 ENSMUSG00000112160 ENSMUST00000220287 BC024063 protein_coding Interval_171487 chr9 118722706 118723495 + 0 NA intron (ENSMUSG00000039115.13, intron 1 of 13) protein_coding-intron (ENSMUSG00000039115.13, intron 15 of 27) 114855 ENSMUSG00000066270.3 ENSMUSG00000066270 ENSMUST00000139408 Gm10157 processed_pseudogene Interval_71476 chr17 24030290 24032583 + 0 NA Intergenic Intergenic -6708 ENSMUSG00000050762.5 ENSMUSG00000050762 ENSMUST00000059482 Prss27 protein_coding Interval_140158 chr6 114926922 114927592 + 0 NA intron (ENSMUSG00000030315.15, intron 2 of 5) protein_coding-intron (ENSMUSG00000030315.15, intron 2 of 4) -5441 ENSMUSG00000030315.15 ENSMUSG00000030315 ENSMUST00000204693 Vgll4 protein_coding Interval_21087 chr10 126056582 126056779 + 0 NA Intergenic Intergenic 19853 ENSMUSG00000093161.1 ENSMUSG00000093161 ENSMUST00000175420 Gm22183 miRNA Interval_36754 chr12 53061674 53063403 + 0 NA intron (ENSMUSG00000061603.8, intron 8 of 11) protein_coding-intron (ENSMUSG00000061603.8, intron 9 of 13) -15712 ENSMUSG00000070192.1 ENSMUSG00000070192 ENSMUST00000093682 n-R5s58 rRNA Interval_9981 chr1 164522284 164523588 + 0 NA Intergenic Intergenic 19627 ENSMUSG00000097281.2 ENSMUSG00000097281 ENSMUST00000181831 Gm26685 lincRNA Interval_120647 chr4 149876842 149878372 + 0 NA Intergenic Intergenic -26399 ENSMUSG00000086767.1 ENSMUSG00000086767 ENSMUST00000146532 Gm13070 antisense Interval_21520 chr10 129101308 129102182 + 0 NA Intergenic Intergenic -2411 ENSMUSG00000050198.4 ENSMUSG00000050198 ENSMUST00000063031 Olfr768 protein_coding Interval_77713 chr17 94604937 94605128 + 0 NA Intergenic Intergenic -3153 ENSMUSG00000117476.1 ENSMUSG00000117476 ENSMUST00000234959 Gm9416 processed_pseudogene Interval_116947 chr4 118372969 118373333 + 0 NA intron (ENSMUSG00000033253.18, intron 5 of 20) protein_coding-intron (ENSMUSG00000033253.18, intron 57 of 71) 1123 ENSMUSG00000033253.18 ENSMUSG00000033253 ENSMUST00000136737 Szt2 protein_coding Interval_17509 chr10 77324765 77325219 + 0 NA TTS (ENSMUSG00000020262.15) protein_coding-TTS (ENSMUSG00000020262.15) 62544 ENSMUSG00000020260.9 ENSMUSG00000020260 ENSMUST00000218117 Pofut2 protein_coding Interval_34922 chr12 13508535 13509634 + 0 NA intron (ENSMUSG00000020576.10, intron 1 of 2) protein_coding-intron (ENSMUSG00000020576.10, intron 44 of 51) -1116 ENSMUSG00000096633.1 ENSMUSG00000096633 ENSMUST00000097247 Gm22170 snRNA Interval_152513 chr7 133708696 133710585 + 0 NA promoter-TSS (ENSMUSG00000030979.13) protein_coding-promoter-TSS (ENSMUSG00000030979.13) 292 ENSMUSG00000030983.4 ENSMUSG00000030983 ENSMUST00000140472 Bccip protein_coding Interval_149438 chr7 98531307 98531599 + 0 NA Intergenic Intergenic 24499 ENSMUSG00000065803.1 ENSMUSG00000065803 ENSMUST00000083869 Gm23040 snRNA Interval_14222 chr10 29117815 29118317 + 0 NA Intergenic Intergenic -25993 ENSMUSG00000038916.7 ENSMUSG00000038916 ENSMUST00000214863 Soga3 protein_coding Interval_41081 chr12 111065982 111066579 + 0 NA intron (ENSMUSG00000037896.17, intron 2 of 11) protein_coding-intron (ENSMUSG00000037896.17, intron 2 of 11) 1748 ENSMUSG00000114110.1 ENSMUSG00000114110 ENSMUST00000222551 Gm46379 processed_pseudogene Interval_166133 chr9 56927047 56928813 + 0 NA exon (ENSMUSG00000032733.6, exon 1 of 2) protein_coding-exon (ENSMUSG00000032733.6, exon 1 of 2) 441 ENSMUSG00000032733.6 ENSMUSG00000032733 ENSMUST00000050916 Snx33 protein_coding Interval_149255 chr7 96722554 96723724 + 0 NA intron (ENSMUSG00000048078.16, intron 4 of 4) protein_coding-intron (ENSMUSG00000048078.16, intron 10 of 32) -73502 ENSMUSG00000048078.16 ENSMUSG00000048078 ENSMUST00000147659 Tenm4 protein_coding Interval_22791 chr11 15620102 15620353 + 0 NA Intergenic Intergenic 137921 ENSMUSG00000083292.1 ENSMUSG00000083292 ENSMUST00000122400 Gm12010 processed_pseudogene Interval_32997 chr11 113586460 113586699 + 0 NA intron (ENSMUSG00000041654.15, intron 2 of 2) protein_coding-intron (ENSMUSG00000041654.15, intron 2 of 2) -20800 ENSMUSG00000041654.15 ENSMUSG00000041654 ENSMUST00000123153 Slc39a11 protein_coding Interval_131246 chr5 135979120 135980550 + 0 NA promoter-TSS (ENSMUSG00000004948.12) protein_coding-promoter-TSS (ENSMUSG00000004948.12) -333 ENSMUSG00000004948.12 ENSMUSG00000004948 ENSMUST00000131563 Zp3 protein_coding Interval_55773 chr14 99894471 99895205 + 0 NA intron (ENSMUSG00000072294.5, intron 1 of 1) protein_coding-intron (ENSMUSG00000072294.5, intron 6 of 6) 5553 ENSMUSG00000072294.5 ENSMUSG00000072294 ENSMUST00000226544 Klf12 protein_coding Interval_27435 chr11 67661637 67661984 + 0 NA exon (ENSMUSG00000049928.15, exon 10 of 10) protein_coding-exon (ENSMUSG00000049928.15, exon 10 of 10) -33516 ENSMUSG00000020907.1 ENSMUSG00000020907 ENSMUST00000021290 Rcvrn protein_coding Interval_11553 chr1 182659203 182659395 + 0 NA Intergenic Intergenic -20640 ENSMUSG00000104376.1 ENSMUSG00000104376 ENSMUST00000192593 Gm37516 TEC Interval_33920 chr11 119404001 119405058 + 0 NA intron (ENSMUSG00000070327.14, intron 2 of 66) protein_coding-intron (ENSMUSG00000070327.14, intron 2 of 66) 14057 ENSMUSG00000088015.1 ENSMUSG00000088015 ENSMUST00000157390 Mir1932 miRNA Interval_85552 chr19 28472954 28474330 + 0 NA intron (ENSMUSG00000052942.13, intron 4 of 10) protein_coding-intron (ENSMUSG00000052942.13, intron 3 of 9) 109652 ENSMUSG00000089952.1 ENSMUSG00000089952 ENSMUST00000162380 4933413C19Rik sense_intronic Interval_28338 chr11 75279193 75280081 + 0 NA Intergenic Intergenic 38971 ENSMUSG00000106179.1 ENSMUSG00000106179 ENSMUST00000198372 Gm47300 miRNA Interval_69376 chr16 92552910 92553147 + 0 NA exon (ENSMUSG00000116709.1, exon 1 of 2) lincRNA-exon (ENSMUSG00000116709.1, exon 1 of 2) 115 ENSMUSG00000116709.1 ENSMUSG00000116709 ENSMUST00000232213 Gm49722 lincRNA Interval_39608 chr12 91537500 91537823 + 0 NA promoter-TSS (ENSMUSG00000020963.15) protein_coding-promoter-TSS (ENSMUSG00000020963.15) 35911 ENSMUSG00000080365.1 ENSMUSG00000080365 ENSMUST00000116715 Gm25776 snoRNA Interval_108860 chr3 132785772 132786724 + 0 NA promoter-TSS (ENSMUSG00000028030.12) protein_coding-promoter-TSS (ENSMUSG00000028030.12) 1087 ENSMUSG00000087776.1 ENSMUSG00000087776 ENSMUST00000157151 Gm22322 snoRNA Interval_116636 chr4 116206542 116206982 + 0 NA intron (ENSMUSG00000111410.1, intron 1 of 9) protein_coding-intron (ENSMUSG00000111410.1, intron 1 of 9) -5810 ENSMUSG00000081459.3 ENSMUSG00000081459 ENSMUST00000121281 Llph-ps1 processed_pseudogene Interval_60913 chr15 77820124 77820432 + 0 NA intron (ENSMUSG00000022443.17, intron 1 of 2) protein_coding-intron (ENSMUSG00000022443.17, intron 1 of 40) 20478 ENSMUSG00000084497.1 ENSMUSG00000084497 ENSMUST00000122548 Gm22107 snRNA Interval_91110 chr2 35165417 35166007 + 0 NA TTS (ENSMUSG00000057110.15) protein_coding-TTS (ENSMUSG00000057110.15) 20616 ENSMUSG00000057110.15 ENSMUSG00000057110 ENSMUST00000143807 Cntrl protein_coding Interval_16031 chr10 60215249 60216406 + 0 NA intron (ENSMUSG00000057337.13, intron 1 of 3) protein_coding-intron (ENSMUSG00000057337.13, intron 1 of 3) -4576 ENSMUSG00000077090.1 ENSMUSG00000077090 ENSMUST00000103902 Gm22117 miRNA Interval_18396 chr10 85525364 85526976 + 0 NA intron (ENSMUSG00000020042.15, intron 1 of 16) protein_coding-intron (ENSMUSG00000020042.15, intron 1 of 9) -119033 ENSMUSG00000020042.15 ENSMUSG00000020042 ENSMUST00000145433 Btbd11 protein_coding Interval_23102 chr11 19959501 19960227 + 0 NA intron (ENSMUSG00000045671.17, intron 1 of 5) protein_coding-intron (ENSMUSG00000045671.17, intron 1 of 5) 5294 ENSMUSG00000045671.17 ENSMUSG00000045671 ENSMUST00000123036 Spred2 protein_coding Interval_114847 chr4 86276571 86277388 + 0 NA exon (ENSMUSG00000066113.16, exon 1 of 16) protein_coding-exon (ENSMUSG00000066113.16, exon 1 of 16) 165362 ENSMUSG00000083272.1 ENSMUSG00000083272 ENSMUST00000118478 Gm12550 processed_pseudogene Interval_139674 chr6 106646552 106647676 + 0 NA intron (ENSMUSG00000064293.14, intron 5 of 15) protein_coding-intron (ENSMUSG00000064293.14, intron 12 of 15) -8389 ENSMUSG00000064293.14 ENSMUSG00000064293 ENSMUST00000142626 Cntn4 protein_coding Interval_59987 chr15 63006311 63007441 + 0 NA Intergenic Intergenic 26228 ENSMUSG00000106988.1 ENSMUSG00000106988 ENSMUST00000201023 Tsg101-ps processed_pseudogene Interval_134069 chr6 18672088 18672803 + 0 NA Intergenic Intergenic -54847 ENSMUSG00000095722.1 ENSMUSG00000095722 ENSMUST00000180301 Gm23648 snRNA Interval_35579 chr12 24995489 24996455 + 0 NA TTS (ENSMUSG00000036333.11) protein_coding-TTS (ENSMUSG00000036333.11) -20418 ENSMUSG00000113774.1 ENSMUSG00000113774 ENSMUST00000220780 Gm36236 bidirectional_promoter_lncRNA Interval_37929 chr12 73095929 73096758 + 0 NA Intergenic Intergenic 17113 ENSMUSG00000034460.9 ENSMUSG00000034460 ENSMUST00000175693 Six4 protein_coding Interval_43920 chr13 38062593 38062877 + 0 NA Intergenic Intergenic -23467 ENSMUSG00000098481.1 ENSMUSG00000098481 ENSMUST00000184583 Gm27387 miRNA Interval_23101 chr11 19949841 19951872 + 0 NA intron (ENSMUSG00000045671.17, intron 1 of 6) protein_coding-intron (ENSMUSG00000045671.17, intron 1 of 5) -3714 ENSMUSG00000045671.17 ENSMUSG00000045671 ENSMUST00000123036 Spred2 protein_coding Interval_68811 chr16 87207596 87208502 + 0 NA Intergenic Intergenic -79610 ENSMUSG00000116979.1 ENSMUSG00000116979 ENSMUST00000232056 Gm32865 lincRNA Interval_170031 chr9 103852583 103852969 + 0 NA Intergenic Intergenic -35233 ENSMUSG00000100266.2 ENSMUSG00000100266 ENSMUST00000187540 Gm5372 processed_pseudogene Interval_16323 chr10 62222838 62223068 + 0 NA intron (ENSMUSG00000037031.10, intron 1 of 7) protein_coding-intron (ENSMUSG00000037031.10, intron 1 of 7) -21176 ENSMUSG00000037031.10 ENSMUSG00000037031 ENSMUST00000220143 Tspan15 protein_coding Interval_87576 chr19 53540593 53540801 + 0 NA intron (ENSMUSG00000034765.6, intron 3 of 3) protein_coding-intron (ENSMUSG00000034765.6, intron 3 of 3) -11042 ENSMUSG00000118210.1 ENSMUSG00000118210 ENSMUST00000236686 Gm50394 antisense Interval_131656 chr5 139103150 139103419 + 0 NA intron (ENSMUSG00000025855.13, intron 3 of 6) protein_coding-intron (ENSMUSG00000025855.13, intron 4 of 10) 46717 ENSMUSG00000025855.13 ENSMUSG00000025855 ENSMUST00000130180 Prkar1b protein_coding Interval_13346 chr10 16303458 16304488 + 0 NA Intergenic Intergenic -60825 ENSMUSG00000112602.1 ENSMUSG00000112602 ENSMUST00000218710 Gm18557 processed_pseudogene Interval_113144 chr4 48600854 48601054 + 0 NA intron (ENSMUSG00000028347.14, intron 1 of 9) protein_coding-intron (ENSMUSG00000028347.14, intron 1 of 9) -35980 ENSMUSG00000028347.14 ENSMUSG00000028347 ENSMUST00000141720 Tmeff1 protein_coding Interval_138622 chr6 90514686 90515728 + 0 NA intron (ENSMUSG00000030088.15, intron 1 of 2) protein_coding-intron (ENSMUSG00000030088.15, intron 1 of 2) 1905 ENSMUSG00000108271.1 ENSMUSG00000108271 ENSMUST00000204492 Gm44236 TEC Interval_89994 chr2 27149599 27149914 + 0 NA intron (ENSMUSG00000085008.1, intron 6 of 6) antisense-intron (ENSMUSG00000085008.1, intron 6 of 6) -7265 ENSMUSG00000009216.7 ENSMUSG00000009216 ENSMUST00000151224 Fam163b protein_coding Interval_48664 chr13 100959179 100959785 + 0 NA intron (ENSMUSG00000100596.1, intron 2 of 2) lincRNA-intron (ENSMUSG00000100596.1, intron 2 of 2) -12667 ENSMUSG00000114759.1 ENSMUSG00000114759 ENSMUST00000223572 Gm10257 processed_pseudogene Interval_111949 chr4 32754195 32754583 + 0 NA TTS (ENSMUSG00000058006.12) protein_coding-TTS (ENSMUSG00000058006.12) -45890 ENSMUSG00000045854.4 ENSMUSG00000045854 ENSMUST00000130321 Lyrm2 protein_coding Interval_11588 chr1 183042203 183042429 + 0 NA Intergenic Intergenic -32290 ENSMUSG00000094807.2 ENSMUSG00000094807 ENSMUST00000178492 Gm24975 miRNA Interval_53233 chr14 55470379 55471617 + 0 NA Intergenic Intergenic -7936 ENSMUSG00000022210.7 ENSMUSG00000022210 ENSMUST00000227542 Dhrs4 protein_coding Interval_10813 chr1 175549335 175549894 + 0 NA Intergenic Intergenic -24695 ENSMUSG00000103079.1 ENSMUSG00000103079 ENSMUST00000195831 Gm36307 lincRNA Interval_84913 chr19 18725085 18725345 + 0 NA Intergenic Intergenic -7526 ENSMUSG00000064941.1 ENSMUSG00000064941 ENSMUST00000083007 Gm23238 snRNA Interval_140725 chr6 120888998 120889355 + 0 NA exon (ENSMUSG00000009112.4, exon 7 of 7) protein_coding-exon (ENSMUSG00000009112.4, exon 7 of 7) 8392 ENSMUSG00000004446.12 ENSMUSG00000004446 ENSMUST00000125915 Bid protein_coding Interval_22979 chr11 18354395 18354636 + 0 NA Intergenic Intergenic -26844 ENSMUSG00000081302.1 ENSMUSG00000081302 ENSMUST00000119030 Gm12020 processed_pseudogene Interval_133149 chr5 150195409 150197249 + 0 NA promoter-TSS (ENSMUSG00000056602.12) protein_coding-promoter-TSS (ENSMUSG00000056602.12) -47534 ENSMUSG00000107082.1 ENSMUSG00000107082 ENSMUST00000201709 Gm36378 processed_pseudogene Interval_44171 chr13 41482587 41482815 + 0 NA intron (ENSMUSG00000021365.15, intron 1 of 1) protein_coding-intron (ENSMUSG00000021365.15, intron 1 of 7) -4446 ENSMUSG00000114585.1 ENSMUSG00000114585 ENSMUST00000225298 Gm32401 antisense Interval_40984 chr12 110429520 110430257 + 0 NA Intergenic Intergenic -17419 ENSMUSG00000017843.14 ENSMUSG00000017843 ENSMUST00000221074 Ppp2r5c protein_coding Interval_20087 chr10 113919030 113919238 + 0 NA Intergenic Intergenic -77513 ENSMUSG00000104006.1 ENSMUSG00000104006 ENSMUST00000193608 Gm38333 TEC Interval_146509 chr7 46508885 46510184 + 0 NA intron (ENSMUSG00000030839.12, intron 3 of 3) protein_coding-intron (ENSMUSG00000030839.12, intron 10 of 10) 3246 ENSMUSG00000110316.1 ENSMUSG00000110316 ENSMUST00000211086 Gm45311 sense_intronic Interval_102581 chr3 27963285 27964409 + 0 NA intron (ENSMUSG00000027695.16, intron 2 of 4) protein_coding-intron (ENSMUSG00000027695.16, intron 2 of 26) -67479 ENSMUSG00000043164.3 ENSMUSG00000043164 ENSMUST00000058077 Tmem212 protein_coding Interval_74315 chr17 48814886 48815425 + 0 NA Intergenic Intergenic -76409 ENSMUSG00000110276.1 ENSMUSG00000110276 ENSMUST00000209681 Gm45330 lincRNA Interval_130177 chr5 124763092 124763339 + 0 NA intron (ENSMUSG00000038011.15, intron 22 of 77) protein_coding-intron (ENSMUSG00000038011.15, intron 23 of 78) -23338 ENSMUSG00000038011.15 ENSMUSG00000038011 ENSMUST00000196708 Dnah10 protein_coding Interval_14935 chr10 41267713 41267924 + 0 NA intron (ENSMUSG00000038417.4, intron 6 of 22) protein_coding-intron (ENSMUSG00000038417.4, intron 6 of 22) 35442 ENSMUSG00000038417.4 ENSMUSG00000038417 ENSMUST00000043814 Fig4 protein_coding Interval_128211 chr5 111765753 111766228 + 0 NA Intergenic Intergenic -4287 ENSMUSG00000085271.7 ENSMUSG00000085271 ENSMUST00000129146 E130006D01Rik lincRNA Interval_2754 chr1 44202538 44203433 + 0 NA Intergenic Intergenic -9177 ENSMUSG00000089703.1 ENSMUSG00000089703 ENSMUST00000161563 Gm15833 processed_pseudogene Interval_134476 chr6 29016555 29017795 + 0 NA intron (ENSMUSG00000092090.2, intron 1 of 1) lincRNA-intron (ENSMUSG00000092090.2, intron 1 of 1) -5444 ENSMUSG00000065469.1 ENSMUSG00000065469 ENSMUST00000083535 Mir129-1 miRNA Interval_52282 chr14 43796638 43797571 + 0 NA promoter-TSS (ENSMUSG00000115844.1) unprocessed_pseudogene-promoter-TSS (ENSMUSG00000115844.1) -185 ENSMUSG00000115844.1 ENSMUSG00000115844 ENSMUST00000227998 Gm49081 unprocessed_pseudogene Interval_137133 chr6 67891362 67891844 + 0 NA Intergenic Intergenic -4569 ENSMUSG00000094345.2 ENSMUSG00000094345 ENSMUST00000103310 Igkv14-126 IG_V_gene Interval_171106 chr9 114562442 114565225 + 0 NA exon (ENSMUSG00000079259.2, exon 1 of 4) protein_coding-exon (ENSMUSG00000079259.2, exon 1 of 4) 536 ENSMUSG00000079259.2 ENSMUSG00000079259 ENSMUST00000111816 Trim71 protein_coding Interval_141551 chr6 129179968 129181254 + 0 NA promoter-TSS (ENSMUSG00000030157.5) protein_coding-promoter-TSS (ENSMUSG00000030157.5) -4 ENSMUSG00000030157.5 ENSMUSG00000030157 ENSMUST00000032260 Clec2d protein_coding Interval_134684 chr6 30357492 30358132 + 0 NA Intergenic Intergenic 9406 ENSMUSG00000039130.18 ENSMUSG00000039130 ENSMUST00000129796 Zc3hc1 protein_coding Interval_100479 chr2 169359785 169360800 + 0 NA Intergenic Intergenic -28789 ENSMUSG00000086840.1 ENSMUSG00000086840 ENSMUST00000148458 Gm14250 lincRNA Interval_99592 chr2 163418390 163420033 + 0 NA promoter-TSS (ENSMUSG00000035399.12) protein_coding-promoter-TSS (ENSMUSG00000035399.12) -584 ENSMUSG00000099632.1 ENSMUSG00000099632 ENSMUST00000190930 2900093K20Rik antisense Interval_15828 chr10 57631720 57632785 + 0 NA intron (ENSMUSG00000019876.15, intron 1 of 4) protein_coding-intron (ENSMUSG00000019876.15, intron 1 of 4) -13633 ENSMUSG00000019876.15 ENSMUSG00000019876 ENSMUST00000176354 Pkib protein_coding Interval_25546 chr11 49699827 49700204 + 0 NA intron (ENSMUSG00000020362.13, intron 2 of 11) protein_coding-intron (ENSMUSG00000020362.13, intron 2 of 11) 2135 ENSMUSG00000081570.1 ENSMUSG00000081570 ENSMUST00000120146 Gm12192 processed_pseudogene Interval_80567 chr18 44299774 44300053 + 0 NA Intergenic Intergenic -15794 ENSMUSG00000117919.1 ENSMUSG00000117919 ENSMUST00000236086 Gm41717 lincRNA Interval_126739 chr5 92434353 92435682 + 0 NA promoter-TSS (ENSMUSG00000034826.14) protein_coding-promoter-TSS (ENSMUSG00000034826.14) 5232 ENSMUSG00000088777.1 ENSMUSG00000088777 ENSMUST00000158152 Gm26039 scaRNA Interval_21722 chr11 3941473 3941745 + 0 NA intron (ENSMUSG00000034493.1, intron 1 of 1) protein_coding-intron (ENSMUSG00000034493.1, intron 1 of 1) -9450 ENSMUSG00000020432.12 ENSMUSG00000020432 ENSMUST00000109993 Tcn2 protein_coding Interval_171291 chr9 116121778 116123331 + 0 NA intron (ENSMUSG00000032440.13, intron 4 of 7) protein_coding-intron (ENSMUSG00000032440.13, intron 3 of 6) 52711 ENSMUSG00000032440.13 ENSMUSG00000032440 ENSMUST00000035014 Tgfbr2 protein_coding Interval_105632 chr3 88245774 88246170 + 0 NA exon (ENSMUSG00000103766.5, exon 6 of 8) protein_coding-exon (ENSMUSG00000103766.5, exon 6 of 8) 8737 ENSMUSG00000104445.1 ENSMUSG00000104445 ENSMUST00000171887 Rhbg protein_coding Interval_106055 chr3 92024505 92025152 + 0 NA TTS (ENSMUSG00000082826.1) processed_pseudogene-TTS (ENSMUSG00000082826.1) 261 ENSMUSG00000082826.1 ENSMUSG00000082826 ENSMUST00000118636 Mif-ps3 processed_pseudogene Interval_66921 chr16 38538548 38539754 + 0 NA intron (ENSMUSG00000034064.14, intron 5 of 10) protein_coding-intron (ENSMUSG00000034064.14, intron 5 of 10) 11071 ENSMUSG00000034064.14 ENSMUSG00000034064 ENSMUST00000137762 Poglut1 protein_coding Interval_45111 chr13 52310971 52311682 + 0 NA Intergenic Intergenic 130915 ENSMUSG00000113399.1 ENSMUSG00000113399 ENSMUST00000222876 Gm48199 lincRNA Interval_131650 chr5 139064479 139065099 + 0 NA intron (ENSMUSG00000025855.13, intron 3 of 6) protein_coding-intron (ENSMUSG00000025855.13, intron 4 of 10) 69733 ENSMUSG00000075585.3 ENSMUSG00000075585 ENSMUST00000187923 6330403L08Rik antisense Interval_149756 chr7 101295366 101297160 + 0 NA TTS (ENSMUSG00000047767.17) protein_coding-TTS (ENSMUSG00000047767.17) 5786 ENSMUSG00000047767.17 ENSMUSG00000047767 ENSMUST00000209093 Atg16l2 protein_coding Interval_61771 chr15 84009600 84009887 + 0 NA intron (ENSMUSG00000022441.17, intron 6 of 31) protein_coding-intron (ENSMUSG00000022441.17, intron 6 of 31) -20596 ENSMUSG00000081925.1 ENSMUSG00000081925 ENSMUST00000117961 Rpl31-ps22 processed_pseudogene Interval_120470 chr4 148830213 148831517 + 0 NA intron (ENSMUSG00000028977.17, intron 1 of 1) protein_coding-intron (ENSMUSG00000028977.17, intron 1 of 15) 83459 ENSMUSG00000086766.1 ENSMUSG00000086766 ENSMUST00000151967 Gm15969 antisense Interval_140702 chr6 120674303 120674903 + 0 NA intron (ENSMUSG00000071226.11, intron 1 of 1) protein_coding-intron (ENSMUSG00000071226.11, intron 1 of 18) -61153 ENSMUSG00000071226.11 ENSMUSG00000071226 ENSMUST00000143563 Cecr2 protein_coding Interval_1401 chr1 21360141 21360970 + 0 NA Intergenic Intergenic -4248 ENSMUSG00000094436.1 ENSMUSG00000094436 ENSMUST00000137146 Gm16327 processed_pseudogene Interval_138092 chr6 85117231 85119432 + 0 NA intron (ENSMUSG00000072952.7, intron 2 of 2) lincRNA-intron (ENSMUSG00000072952.7, intron 2 of 2) 6638 ENSMUSG00000107769.1 ENSMUSG00000107769 ENSMUST00000203740 Gm43959 processed_pseudogene Interval_75810 chr17 71551561 71552729 + 0 NA promoter-TSS (ENSMUSG00000052525.14) protein_coding-promoter-TSS (ENSMUSG00000052525.14) 84 ENSMUSG00000052525.14 ENSMUSG00000052525 ENSMUST00000144142 Spdya protein_coding Interval_85740 chr19 30213827 30215031 + 0 NA Intergenic Intergenic -18513 ENSMUSG00000024863.6 ENSMUSG00000024863 ENSMUST00000025797 Mbl2 protein_coding Interval_115679 chr4 101984130 101985421 + 0 NA Intergenic Intergenic -2085 ENSMUSG00000078625.10 ENSMUSG00000078625 ENSMUST00000106915 Gm12789 protein_coding Interval_42935 chr13 21488545 21488869 + 0 NA Intergenic Intergenic -2306 ENSMUSG00000088563.1 ENSMUSG00000088563 ENSMUST00000157938 Gm23779 snRNA Interval_73029 chr17 34241830 34242215 + 0 NA promoter-TSS (ENSMUSG00000041538.16) protein_coding-promoter-TSS (ENSMUSG00000041538.16) -59 ENSMUSG00000041538.16 ENSMUSG00000041538 ENSMUST00000172952 H2-Ob protein_coding Interval_74747 chr17 56289583 56291712 + 0 NA promoter-TSS (ENSMUSG00000024197.10) protein_coding-promoter-TSS (ENSMUSG00000024197.10) 2226 ENSMUSG00000024197.10 ENSMUSG00000024197 ENSMUST00000233070 Plin3 protein_coding Interval_112170 chr4 35137997 35138768 + 0 NA intron (ENSMUSG00000073910.10, intron 1 of 1) protein_coding-intron (ENSMUSG00000073910.10, intron 1 of 3) -13674 ENSMUSG00000042993.6 ENSMUSG00000042993 ENSMUST00000058595 Ifnk protein_coding Interval_1252 chr1 18268526 18270203 + 0 NA Intergenic Intergenic -4284 ENSMUSG00000067773.6 ENSMUSG00000067773 ENSMUST00000097817 Defb41 protein_coding Interval_2470 chr1 39597232 39598309 + 0 NA exon (ENSMUSG00000102471.1, exon 1 of 1) processed_pseudogene-exon (ENSMUSG00000102471.1, exon 1 of 1) 235 ENSMUSG00000102471.1 ENSMUSG00000102471 ENSMUST00000195631 Gm5100 processed_pseudogene Interval_36716 chr12 52412688 52413409 + 0 NA intron (ENSMUSG00000112139.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000112139.1, intron 1 of 1) 35077 ENSMUSG00000112139.1 ENSMUSG00000112139 ENSMUST00000218097 Gm47431 lincRNA Interval_82901 chr18 78669564 78669835 + 0 NA Intergenic Intergenic 21571 ENSMUSG00000088733.1 ENSMUSG00000088733 ENSMUST00000158108 Gm23895 snRNA Interval_939 chr1 13316712 13317242 + 0 NA intron (ENSMUSG00000005886.14, intron 1 of 12) protein_coding-intron (ENSMUSG00000005886.14, intron 1 of 22) 17632 ENSMUSG00000087782.1 ENSMUSG00000087782 ENSMUST00000157157 Gm23169 snRNA Interval_35873 chr12 31487313 31487682 + 0 NA exon (ENSMUSG00000020659.16, exon 6 of 6) protein_coding-exon (ENSMUSG00000020659.16, exon 6 of 6) 539 ENSMUSG00000099851.1 ENSMUSG00000099851 ENSMUST00000186876 Gm29542 antisense Interval_153028 chr7 140967626 140969208 + 0 NA exon (ENSMUSG00000025491.14, exon 1 of 2) protein_coding-exon (ENSMUSG00000025491.14, exon 1 of 2) 1196 ENSMUSG00000025491.14 ENSMUSG00000025491 ENSMUST00000026564 Ifitm1 protein_coding Interval_134007 chr6 17675173 17675676 + 0 NA Intergenic Intergenic -18002 ENSMUSG00000098767.1 ENSMUSG00000098767 ENSMUST00000184623 Gm27755 misc_RNA Interval_37086 chr12 57571781 57572229 + 0 NA intron (ENSMUSG00000046782.14, intron 1 of 4) protein_coding-intron (ENSMUSG00000046782.14, intron 1 of 4) -3812 ENSMUSG00000046782.14 ENSMUSG00000046782 ENSMUST00000172852 Ttc6 protein_coding Interval_29412 chr11 83810512 83810869 + 0 NA Intergenic Intergenic 10226 ENSMUSG00000081342.1 ENSMUSG00000081342 ENSMUST00000122379 Gm11434 processed_pseudogene Interval_113975 chr4 62207842 62209412 + 0 NA promoter-TSS (ENSMUSG00000028389.12) protein_coding-promoter-TSS (ENSMUSG00000028389.12) -425 ENSMUSG00000028389.12 ENSMUSG00000028389 ENSMUST00000212325 Zfp37 protein_coding Interval_22839 chr11 16532969 16533304 + 0 NA Intergenic Intergenic 18603 ENSMUSG00000084347.3 ENSMUSG00000084347 ENSMUST00000120718 Akt2-ps processed_pseudogene Interval_33599 chr11 117425576 117426446 + 0 NA promoter-TSS (ENSMUSG00000085336.1) processed_transcript-promoter-TSS (ENSMUSG00000085336.1) -167 ENSMUSG00000085336.1 ENSMUSG00000085336 ENSMUST00000151381 Gm11732 processed_transcript Interval_14824 chr10 40307864 40308387 + 0 NA Intergenic Intergenic -5937 ENSMUSG00000075232.6 ENSMUSG00000075232 ENSMUST00000216993 Amd1 protein_coding Interval_52555 chr14 47465472 47465707 + 0 NA intron (ENSMUSG00000037536.14, intron 2 of 3) protein_coding-intron (ENSMUSG00000037536.14, intron 2 of 3) -7528 ENSMUSG00000037536.14 ENSMUSG00000037536 ENSMUST00000228634 Fbxo34 protein_coding Interval_85456 chr19 26697216 26697447 + 0 NA promoter-TSS (ENSMUSG00000024921.17) protein_coding-promoter-TSS (ENSMUSG00000024921.17) -51071 ENSMUSG00000024921.17 ENSMUSG00000024921 ENSMUST00000208984 Smarca2 protein_coding Interval_33351 chr11 116071379 116072027 + 0 NA intron (ENSMUSG00000057948.12, intron 12 of 31) protein_coding-intron (ENSMUSG00000057948.12, intron 13 of 32) 5887 ENSMUSG00000057948.12 ENSMUSG00000057948 ENSMUST00000156545 Unc13d protein_coding Interval_14510 chr10 34536213 34536412 + 0 NA intron (ENSMUSG00000019779.15, intron 1 of 5) protein_coding-intron (ENSMUSG00000019779.15, intron 2 of 8) 52780 ENSMUSG00000019779.15 ENSMUSG00000019779 ENSMUST00000215594 Frk protein_coding Interval_146439 chr7 45901677 45902610 + 0 NA TTS (ENSMUSG00000002781.19) protein_coding-TTS (ENSMUSG00000002781.19) -5444 ENSMUSG00000040231.16 ENSMUSG00000040231 ENSMUST00000120299 Syngr4 protein_coding Interval_98815 chr2 155258407 155258687 + 0 NA Intergenic Intergenic -18342 ENSMUSG00000027602.9 ENSMUSG00000027602 ENSMUST00000154596 Map1lc3a protein_coding Interval_173396 chrX 88116008 88116625 + 0 NA promoter-TSS (ENSMUSG00000052372.10) protein_coding-promoter-TSS (ENSMUSG00000052372.10) -671 ENSMUSG00000052372.10 ENSMUSG00000052372 ENSMUST00000113964 Il1rapl1 protein_coding Interval_156935 chr8 61927084 61929062 + 0 NA promoter-TSS (ENSMUSG00000037921.15) protein_coding-promoter-TSS (ENSMUSG00000037921.15) -16 ENSMUSG00000037921.15 ENSMUSG00000037921 ENSMUST00000136121 Ddx60 protein_coding Interval_9372 chr1 156633074 156633817 + 0 NA intron (ENSMUSG00000026596.13, intron 7 of 12) protein_coding-intron (ENSMUSG00000026596.13, intron 7 of 11) 17522 ENSMUSG00000026596.13 ENSMUSG00000026596 ENSMUST00000190749 Abl2 protein_coding Interval_96359 chr2 121969563 121970125 + 0 NA intron (ENSMUSG00000033411.16, intron 2 of 12) protein_coding-intron (ENSMUSG00000033411.16, intron 2 of 12) 13364 ENSMUSG00000033411.16 ENSMUSG00000033411 ENSMUST00000127265 Ctdspl2 protein_coding Interval_129713 chr5 121913748 121914331 + 0 NA intron (ENSMUSG00000042589.18, intron 2 of 20) protein_coding-intron (ENSMUSG00000042589.18, intron 4 of 22) -47976 ENSMUSG00000042589.18 ENSMUSG00000042589 ENSMUST00000125267 Cux2 protein_coding Interval_64569 chr16 13378167 13378356 + 0 NA intron (ENSMUSG00000087526.2, intron 4 of 7) protein_coding-intron (ENSMUSG00000009569.14, intron 3 of 16) 19840 ENSMUSG00000009569.14 ENSMUSG00000009569 ENSMUST00000149359 Mrtfb protein_coding Interval_105297 chr3 84656794 84657618 + 0 NA intron (ENSMUSG00000102805.5, intron 3 of 9) protein_coding-intron (ENSMUSG00000102805.5, intron 3 of 9) -9004 ENSMUSG00000056498.13 ENSMUSG00000056498 ENSMUST00000128344 Tmem154 protein_coding Interval_156359 chr8 47691403 47692096 + 0 NA Intergenic Intergenic 16358 ENSMUSG00000074357.3 ENSMUSG00000074357 ENSMUST00000211481 AA386476 bidirectional_promoter_lncRNA Interval_114213 chr4 67930637 67931490 + 0 NA exon (ENSMUSG00000083087.1, exon 1 of 1) processed_pseudogene-exon (ENSMUSG00000083087.1, exon 1 of 1) 182 ENSMUSG00000083087.1 ENSMUSG00000083087 ENSMUST00000117071 Gm11249 processed_pseudogene Interval_24083 chr11 30078848 30079163 + 0 NA Intergenic Intergenic -27389 ENSMUSG00000101872.1 ENSMUSG00000101872 ENSMUST00000186216 Gm29237 antisense Interval_63816 chr16 3689133 3690305 + 0 NA Intergenic Intergenic 28366 ENSMUSG00000022534.14 ENSMUSG00000022534 ENSMUST00000100222 Mefv protein_coding Interval_64466 chr16 11676346 11676703 + 0 NA intron (ENSMUSG00000071669.14, intron 18 of 20) protein_coding-intron (ENSMUSG00000071669.14, intron 11 of 13) 15333 ENSMUSG00000085732.1 ENSMUSG00000085732 ENSMUST00000154314 Gm4279 antisense Interval_98545 chr2 153134200 153134749 + 0 NA intron (ENSMUSG00000003283.15, intron 7 of 12) protein_coding-intron (ENSMUSG00000003283.15, intron 7 of 12) -20539 ENSMUSG00000089499.1 ENSMUSG00000089499 ENSMUST00000158874 Gm25643 snRNA Interval_153127 chr7 141525150 141525784 + 0 NA exon (ENSMUSG00000025512.15, exon 6 of 11) protein_coding-exon (ENSMUSG00000025512.15, exon 6 of 11) -6864 ENSMUSG00000110400.1 ENSMUSG00000110400 ENSMUST00000209713 Gm45416 TEC Interval_139018 chr6 94223934 94224239 + 0 NA intron (ENSMUSG00000045095.16, intron 2 of 2) protein_coding-intron (ENSMUSG00000045095.16, intron 1 of 21) 99948 ENSMUSG00000107545.1 ENSMUSG00000107545 ENSMUST00000204466 Gm44307 processed_pseudogene Interval_165302 chr9 46132713 46134441 + 0 NA intron (ENSMUSG00000034135.15, intron 3 of 24) protein_coding-intron (ENSMUSG00000034135.15, intron 3 of 22) 10447 ENSMUSG00000034135.15 ENSMUSG00000034135 ENSMUST00000138338 Sik3 protein_coding Interval_42978 chr13 22028746 22030183 + 0 NA intron (ENSMUSG00000043145.7, intron 1 of 1) processed_transcript-intron (ENSMUSG00000043145.7, intron 1 of 1) 2765 ENSMUSG00000043145.7 ENSMUSG00000043145 ENSMUST00000146121 Gm11292 processed_transcript Interval_150154 chr7 107428839 107429626 + 0 NA intron (ENSMUSG00000062542.11, intron 2 of 5) protein_coding-intron (ENSMUSG00000062542.11, intron 2 of 6) 63160 ENSMUSG00000109078.1 ENSMUSG00000109078 ENSMUST00000208516 Gm19033 processed_pseudogene Interval_68557 chr16 78635253 78636046 + 0 NA Intergenic Intergenic 10902 ENSMUSG00000093988.1 ENSMUSG00000093988 ENSMUST00000083459 Gm24861 snRNA Interval_22341 chr11 8966665 8967220 + 0 NA intron (ENSMUSG00000046634.12, intron 1 of 49) protein_coding-intron (ENSMUSG00000046634.12, intron 1 of 49) -16403 ENSMUSG00000046634.12 ENSMUSG00000046634 ENSMUST00000155886 Pkd1l1 protein_coding Interval_27893 chr11 70680760 70681007 + 0 NA exon (ENSMUSG00000040712.16, exon 9 of 23) protein_coding-exon (ENSMUSG00000040712.16, exon 9 of 23) 7065 ENSMUSG00000040712.16 ENSMUSG00000040712 ENSMUST00000150224 Camta2 protein_coding Interval_120680 chr4 150066485 150067276 + 0 NA Intergenic Intergenic -1574 ENSMUSG00000065493.1 ENSMUSG00000065493 ENSMUST00000083559 Mir34a miRNA Interval_79684 chr18 34505994 34507418 + 0 NA promoter-TSS (ENSMUSG00000036501.7) protein_coding-promoter-TSS (ENSMUSG00000036501.7) -3031 ENSMUSG00000084467.1 ENSMUSG00000084467 ENSMUST00000122518 n-R5s24 rRNA Interval_6016 chr1 93985813 93986184 + 0 NA TTS (ENSMUSG00000099624.1) unprocessed_pseudogene-TTS (ENSMUSG00000099624.1) -4511 ENSMUSG00000073608.4 ENSMUSG00000073608 ENSMUST00000097632 Gal3st2c protein_coding Interval_100453 chr2 169088146 169089349 + 0 NA Intergenic Intergenic -17706 ENSMUSG00000086238.1 ENSMUSG00000086238 ENSMUST00000144607 Gm14258 lincRNA Interval_137211 chr6 70113015 70114006 + 0 NA Intergenic Intergenic 4110 ENSMUSG00000076577.2 ENSMUSG00000076577 ENSMUST00000103378 Igkv8-30 IG_V_gene Interval_68700 chr16 84812942 84813181 + 0 NA exon (ENSMUSG00000053062.16, exon 5 of 10) protein_coding-exon (ENSMUSG00000053062.16, exon 5 of 10) -5036 ENSMUSG00000088249.1 ENSMUSG00000088249 ENSMUST00000157624 Gm25908 rRNA Interval_53936 chr14 63507170 63509331 + 0 NA intron (ENSMUSG00000021953.14, intron 1 of 1) protein_coding-intron (ENSMUSG00000021953.14, intron 1 of 8) -11111 ENSMUSG00000021953.14 ENSMUSG00000021953 ENSMUST00000167685 Tdh protein_coding Interval_86563 chr19 41719111 41719462 + 0 NA intron (ENSMUSG00000025020.11, intron 3 of 11) protein_coding-intron (ENSMUSG00000025020.11, intron 4 of 36) 24200 ENSMUSG00000025020.11 ENSMUSG00000025020 ENSMUST00000171586 Slit1 protein_coding Interval_102134 chr3 18356908 18357906 + 0 NA intron (ENSMUSG00000102886.1, intron 5 of 5) lincRNA-intron (ENSMUSG00000102886.1, intron 5 of 5) 58097 ENSMUSG00000104801.1 ENSMUSG00000104801 ENSMUST00000197097 Gm43834 TEC Interval_89803 chr2 25546242 25547369 + 0 NA intron (ENSMUSG00000026942.13, intron 1 of 10) protein_coding-intron (ENSMUSG00000026942.13, intron 1 of 10) 3326 ENSMUSG00000083043.1 ENSMUSG00000083043 ENSMUST00000121701 Gm13433 processed_pseudogene Interval_38279 chr12 76876201 76876964 + 0 NA intron (ENSMUSG00000033373.16, intron 6 of 13) protein_coding-intron (ENSMUSG00000033373.16, intron 4 of 11) -10476 ENSMUSG00000033373.16 ENSMUSG00000033373 ENSMUST00000130605 Fntb protein_coding Interval_135934 chr6 48895978 48896358 + 0 NA intron (ENSMUSG00000029811.14, intron 1 of 4) protein_coding-intron (ENSMUSG00000029811.14, intron 1 of 4) 23272 ENSMUSG00000029811.14 ENSMUSG00000029811 ENSMUST00000161184 Aoc1 protein_coding Interval_97665 chr2 142452814 142453003 + 0 NA Intergenic Intergenic 70920 ENSMUSG00000089318.1 ENSMUSG00000089318 ENSMUST00000158693 Gm23179 misc_RNA Interval_132659 chr5 146993160 146994069 + 0 NA Intergenic Intergenic 25421 ENSMUSG00000016520.7 ENSMUSG00000016520 ENSMUST00000123092 Lnx2 protein_coding Interval_100480 chr2 169388039 169389173 + 0 NA promoter-TSS (ENSMUSG00000086840.1) lincRNA-promoter-TSS (ENSMUSG00000086840.1) -475 ENSMUSG00000086840.1 ENSMUSG00000086840 ENSMUST00000148458 Gm14250 lincRNA Interval_47052 chr13 74835227 74836480 + 0 NA Intergenic Intergenic -27332 ENSMUSG00000021585.10 ENSMUSG00000021585 ENSMUST00000223123 Cast protein_coding Interval_14825 chr10 40309956 40310958 + 0 NA Intergenic Intergenic -8269 ENSMUSG00000075232.6 ENSMUSG00000075232 ENSMUST00000216993 Amd1 protein_coding Interval_149633 chr7 100202038 100202260 + 0 NA intron (ENSMUSG00000109186.1, intron 1 of 1) antisense-intron (ENSMUSG00000109186.1, intron 1 of 1) -3801 ENSMUSG00000109435.1 ENSMUSG00000109435 ENSMUST00000207698 Gm7067 processed_pseudogene Interval_159459 chr8 94857202 94858237 + 0 NA promoter-TSS (ENSMUSG00000031783.10) protein_coding-promoter-TSS (ENSMUSG00000031783.10) -3997 ENSMUSG00000031783.10 ENSMUSG00000031783 ENSMUST00000212848 Polr2c protein_coding Interval_140903 chr6 122675307 122675538 + 0 NA Intergenic Intergenic -20579 ENSMUSG00000072789.4 ENSMUSG00000072789 ENSMUST00000121713 Gm10420 processed_pseudogene Interval_152956 chr7 140042530 140043058 + 0 NA Intergenic Intergenic -6125 ENSMUSG00000025474.9 ENSMUSG00000025474 ENSMUST00000209574 Tubgcp2 protein_coding Interval_145055 chr7 29783489 29784764 + 0 NA promoter-TSS (ENSMUSG00000047473.14) protein_coding-promoter-TSS (ENSMUSG00000047473.14) 103 ENSMUSG00000047473.14 ENSMUSG00000047473 ENSMUST00000122387 Zfp30 protein_coding Interval_35336 chr12 20800640 20802192 + 0 NA Intergenic Intergenic 3292 ENSMUSG00000101813.1 ENSMUSG00000101813 ENSMUST00000185966 Gm28503 transcribed_processed_pseudogene Interval_53153 chr14 54754239 54755262 + 0 NA intron (ENSMUSG00000022180.7, intron 3 of 3) protein_coding-intron (ENSMUSG00000022180.7, intron 3 of 10) 27196 ENSMUSG00000022180.7 ENSMUSG00000022180 ENSMUST00000226646 Slc7a8 protein_coding Interval_62727 chr15 96489077 96490277 + 0 NA Intergenic Intergenic -4900 ENSMUSG00000116253.1 ENSMUSG00000116253 ENSMUST00000229198 Gm41392 lincRNA Interval_33881 chr11 119183925 119184989 + 0 NA promoter-TSS (ENSMUSG00000085548.1) sense_intronic-promoter-TSS (ENSMUSG00000085548.1) 59 ENSMUSG00000085548.1 ENSMUSG00000085548 ENSMUST00000151091 Gm11753 sense_intronic Interval_167655 chr9 71612939 71613448 + 0 NA Intergenic Intergenic -13053 ENSMUSG00000111815.1 ENSMUSG00000111815 ENSMUST00000216090 Gm6018 processed_pseudogene Interval_17336 chr10 75950130 75952158 + 0 NA Intergenic Intergenic -5457 ENSMUSG00000082234.1 ENSMUSG00000082234 ENSMUST00000117331 Gm16221 processed_pseudogene Interval_19481 chr10 100022112 100022647 + 0 NA intron (ENSMUSG00000019966.18, intron 1 of 3) protein_coding-intron (ENSMUSG00000019966.18, intron 1 of 8) 33758 ENSMUSG00000112299.1 ENSMUSG00000112299 ENSMUST00000219489 Gm17870 processed_pseudogene Interval_73031 chr17 34249833 34250268 + 0 NA TTS (ENSMUSG00000041538.16) protein_coding-TTS (ENSMUSG00000041538.16) 7969 ENSMUSG00000041538.16 ENSMUSG00000041538 ENSMUST00000172952 H2-Ob protein_coding Interval_14246 chr10 29532921 29536472 + 0 NA promoter-TSS (ENSMUSG00000110831.1) antisense-promoter-TSS (ENSMUSG00000110831.1) -21 ENSMUSG00000110831.1 ENSMUSG00000110831 ENSMUST00000215560 Gm48159 antisense Interval_119943 chr4 141044924 141045172 + 0 NA TTS (ENSMUSG00000040860.16) protein_coding-TTS (ENSMUSG00000040860.16) 13151 ENSMUSG00000040860.16 ENSMUSG00000040860 ENSMUST00000144196 Crocc protein_coding Interval_16909 chr10 69786765 69787391 + 0 NA promoter-TSS (ENSMUSG00000069601.14) protein_coding-promoter-TSS (ENSMUSG00000069601.14) -220717 ENSMUSG00000112729.1 ENSMUSG00000112729 ENSMUST00000220152 Gm46231 processed_pseudogene Interval_127227 chr5 101667794 101668141 + 0 NA Intergenic Intergenic -2971 ENSMUSG00000035187.10 ENSMUSG00000035187 ENSMUST00000044125 Nkx6-1 protein_coding Interval_127430 chr5 103875651 103876114 + 0 NA exon (ENSMUSG00000029312.12, exon 3 of 10) protein_coding-exon (ENSMUSG00000029312.12, exon 3 of 10) -1513 ENSMUSG00000029312.12 ENSMUSG00000029312 ENSMUST00000147184 Klhl8 protein_coding Interval_10799 chr1 175093474 175093730 + 0 NA intron (ENSMUSG00000026527.13, intron 10 of 17) protein_coding-intron (ENSMUSG00000026527.13, intron 9 of 15) -7422 ENSMUSG00000026527.13 ENSMUSG00000026527 ENSMUST00000193798 Rgs7 protein_coding Interval_68922 chr16 88778044 88778254 + 0 NA exon (ENSMUSG00000009047.4, exon 1 of 2) protein_coding-exon (ENSMUSG00000009047.4, exon 1 of 2) 253 ENSMUSG00000009047.4 ENSMUSG00000009047 ENSMUST00000238221 Gm5965 protein_coding Interval_100530 chr2 169961234 169963047 + 0 NA TTS (ENSMUSG00000103935.1) TEC-TTS (ENSMUSG00000103935.1) 1047 ENSMUSG00000103935.1 ENSMUSG00000103935 ENSMUST00000194482 AY702102 TEC Interval_22519 chr11 11394899 11395088 + 0 NA intron (ENSMUSG00000020193.3, intron 6 of 7) protein_coding-intron (ENSMUSG00000020193.3, intron 6 of 7) 32519 ENSMUSG00000064766.1 ENSMUSG00000064766 ENSMUST00000082832 Gm26458 snoRNA Interval_73862 chr17 44785986 44786301 + 0 NA promoter-TSS (ENSMUSG00000038954.14) protein_coding-promoter-TSS (ENSMUSG00000038954.14) 8818 ENSMUSG00000038954.14 ENSMUSG00000038954 ENSMUST00000129416 Supt3 protein_coding Interval_48486 chr13 99375328 99375970 + 0 NA intron (ENSMUSG00000041632.7, intron 4 of 5) protein_coding-intron (ENSMUSG00000041632.7, intron 4 of 10) 30105 ENSMUSG00000041632.7 ENSMUSG00000041632 ENSMUST00000225973 Mrps27 protein_coding Interval_46104 chr13 61763085 61765194 + 0 NA Intergenic Intergenic -35764 ENSMUSG00000095905.2 ENSMUSG00000095905 ENSMUST00000178835 Selenok-ps4 processed_pseudogene Interval_156003 chr8 41827332 41827697 + 0 NA intron (ENSMUSG00000102046.1, intron 1 of 5) lincRNA-intron (ENSMUSG00000102046.1, intron 1 of 5) 247 ENSMUSG00000102046.1 ENSMUSG00000102046 ENSMUST00000188324 2810404M03Rik lincRNA Interval_28257 chr11 74716685 74716927 + 0 NA intron (ENSMUSG00000020745.15, intron 1 of 9) protein_coding-intron (ENSMUSG00000020745.15, intron 1 of 10) 7512 ENSMUSG00000020745.15 ENSMUSG00000020745 ENSMUST00000155493 Pafah1b1 protein_coding Interval_23902 chr11 28117710 28117907 + 0 NA Intergenic Intergenic 71773 ENSMUSG00000083201.1 ENSMUSG00000083201 ENSMUST00000119821 Gm12080 processed_pseudogene Interval_50858 chr14 20250376 20251257 + 0 NA intron (ENSMUSG00000114410.1, intron 4 of 4) unprocessed_pseudogene-intron (ENSMUSG00000114410.1, intron 4 of 4) 10116 ENSMUSG00000114410.1 ENSMUSG00000114410 ENSMUST00000224421 Gm2048 unprocessed_pseudogene Interval_62467 chr15 93233075 93233271 + 0 NA Intergenic Intergenic -1190 ENSMUSG00000065911.1 ENSMUSG00000065911 ENSMUST00000083977 Gm24447 misc_RNA Interval_161402 chr8 120264773 120265758 + 0 NA intron (ENSMUSG00000031822.20, intron 1 of 2) protein_coding-intron (ENSMUSG00000092329.1, intron 1 of 15) -37035 ENSMUSG00000097960.1 ENSMUSG00000097960 ENSMUST00000183235 A330074K22Rik lincRNA Interval_15418 chr10 45874185 45874469 + 0 NA promoter-TSS (ENSMUSG00000110841.1) transcribed_processed_pseudogene-promoter-TSS (ENSMUSG00000110841.1) -978 ENSMUSG00000110841.1 ENSMUSG00000110841 ENSMUST00000217344 Gpx4-ps2 transcribed_processed_pseudogene Interval_164261 chr9 34649093 34649331 + 0 NA intron (ENSMUSG00000032036.15, intron 1 of 15) protein_coding-intron (ENSMUSG00000032036.15, intron 1 of 16) 127457 ENSMUSG00000103552.1 ENSMUSG00000103552 ENSMUST00000194358 Gm38217 TEC Interval_109017 chr3 135178155 135178515 + 0 NA Intergenic Intergenic 7706 ENSMUSG00000105266.1 ENSMUSG00000105266 ENSMUST00000197245 Gm18546 processed_pseudogene Interval_136892 chr6 63214851 63215221 + 0 NA Intergenic Intergenic -14890 ENSMUSG00000088721.2 ENSMUSG00000088721 ENSMUST00000158096 Gm22212 snRNA Interval_159750 chr8 100850514 100851504 + 0 NA Intergenic Intergenic -124654 ENSMUSG00000109769.1 ENSMUSG00000109769 ENSMUST00000210760 Gm39232 lincRNA Interval_8605 chr1 143750113 143750423 + 0 NA TTS (ENSMUSG00000018196.18) protein_coding-TTS (ENSMUSG00000018196.18) 6853 ENSMUSG00000018196.18 ENSMUSG00000018196 ENSMUST00000152435 Glrx2 protein_coding Interval_114161 chr4 65420190 65421137 + 0 NA intron (ENSMUSG00000028373.16, intron 19 of 21) protein_coding-intron (ENSMUSG00000028373.16, intron 20 of 22) -184586 ENSMUSG00000051675.13 ENSMUSG00000051675 ENSMUST00000156922 Trim32 protein_coding Interval_51620 chr14 30844232 30844490 + 0 NA intron (ENSMUSG00000006526.13, intron 1 of 2) protein_coding-intron (ENSMUSG00000006526.13, intron 1 of 7) 18767 ENSMUSG00000006526.13 ENSMUSG00000006526 ENSMUST00000226788 Stimate protein_coding Interval_30901 chr11 97150014 97152516 + 0 NA promoter-TSS (ENSMUSG00000038517.15) protein_coding-promoter-TSS (ENSMUSG00000038517.15) 230 ENSMUSG00000038517.15 ENSMUSG00000038517 ENSMUST00000146374 Tbkbp1 protein_coding Interval_141975 chr6 136262873 136263125 + 0 NA Intergenic Intergenic -18228 ENSMUSG00000087878.1 ENSMUSG00000087878 ENSMUST00000157253 Gm26105 snRNA Interval_31053 chr11 97899758 97900388 + 0 NA Intergenic Intergenic 15479 ENSMUSG00000086917.1 ENSMUSG00000086917 ENSMUST00000152825 Gm11630 lincRNA Interval_19943 chr10 111421250 111423040 + 0 NA Intergenic Intergenic -51082 ENSMUSG00000058799.16 ENSMUSG00000058799 ENSMUST00000219718 Nap1l1 protein_coding Interval_137495 chr6 72758249 72759132 + 0 NA intron (ENSMUSG00000055799.13, intron 2 of 5) protein_coding-intron (ENSMUSG00000055799.13, intron 3 of 11) -6776 ENSMUSG00000104501.1 ENSMUSG00000104501 ENSMUST00000193564 Gm37736 TEC Interval_120071 chr4 141641161 141642734 + 0 NA intron (ENSMUSG00000028917.14, intron 3 of 3) protein_coding-intron (ENSMUSG00000028917.14, intron 5 of 19) -10900 ENSMUSG00000028917.14 ENSMUSG00000028917 ENSMUST00000141844 Plekhm2 protein_coding Interval_93628 chr2 75136688 75138659 + 0 NA exon (ENSMUSG00000087333.1, exon 1 of 3) lincRNA-exon (ENSMUSG00000087333.1, exon 1 of 3) 125 ENSMUSG00000087333.1 ENSMUSG00000087333 ENSMUST00000143898 Gm13652 lincRNA Interval_120245 chr4 144872729 144874141 + 0 NA Intergenic Intergenic -19392 ENSMUSG00000066026.14 ENSMUSG00000066026 ENSMUST00000133265 Dhrs3 protein_coding Interval_96438 chr2 122746237 122747020 + 0 NA TTS (ENSMUSG00000005804.14) protein_coding-TTS (ENSMUSG00000005804.14) 8109 ENSMUSG00000005804.14 ENSMUSG00000005804 ENSMUST00000129690 Bloc1s6 protein_coding Interval_21030 chr10 123949916 123950128 + 0 NA Intergenic Intergenic -58124 ENSMUSG00000112603.1 ENSMUSG00000112603 ENSMUST00000219335 Gm18510 processed_pseudogene Interval_136334 chr6 53200860 53202194 + 0 NA Intergenic Intergenic -19637 ENSMUSG00000107935.1 ENSMUSG00000107935 ENSMUST00000205210 Gm4872 lincRNA Interval_17287 chr10 75592900 75593152 + 0 NA intron (ENSMUSG00000006344.17, intron 1 of 1) protein_coding-intron (ENSMUSG00000006344.17, intron 1 of 11) -2373 ENSMUSG00000055872.1 ENSMUSG00000055872 ENSMUST00000044101 Gm9985 pseudogene Interval_65964 chr16 30570086 30570469 + 0 NA intron (ENSMUSG00000022538.20, intron 8 of 11) protein_coding-intron (ENSMUSG00000022538.20, intron 8 of 13) 4966 ENSMUSG00000022538.20 ENSMUSG00000022538 ENSMUST00000129004 Lsg1 protein_coding Interval_16971 chr10 70209499 70209772 + 0 NA intron (ENSMUSG00000019933.7, intron 1 of 2) protein_coding-intron (ENSMUSG00000019933.7, intron 1 of 2) 4925 ENSMUSG00000019933.7 ENSMUSG00000019933 ENSMUST00000189468 Mrln protein_coding Interval_155855 chr8 40298631 40298837 + 0 NA intron (ENSMUSG00000031603.14, intron 1 of 2) protein_coding-intron (ENSMUSG00000031603.14, intron 1 of 2) 9195 ENSMUSG00000098431.1 ENSMUSG00000098431 ENSMUST00000183849 Mir7666 miRNA Interval_111943 chr4 32707546 32707920 + 0 NA intron (ENSMUSG00000058006.12, intron 34 of 101) protein_coding-intron (ENSMUSG00000058006.12, intron 34 of 101) 50614 ENSMUSG00000058006.12 ENSMUSG00000058006 ENSMUST00000124361 Mdn1 protein_coding Interval_128809 chr5 115386799 115387453 + 0 NA intron (ENSMUSG00000087292.1, intron 2 of 2) lincRNA-intron (ENSMUSG00000087292.1, intron 2 of 2) -27003 ENSMUSG00000086352.1 ENSMUSG00000086352 ENSMUST00000139500 4930401G09Rik lincRNA Interval_156684 chr8 57215478 57216231 + 0 NA Intergenic Intergenic 76198 ENSMUSG00000110327.1 ENSMUSG00000110327 ENSMUST00000209260 Gm17994 processed_pseudogene Interval_634 chr1 9313234 9313809 + 0 NA Intergenic Intergenic 26599 ENSMUSG00000102871.1 ENSMUSG00000102871 ENSMUST00000195180 Gm37143 TEC Interval_44852 chr13 49114921 49115191 + 0 NA intron (ENSMUSG00000037989.15, intron 2 of 27) protein_coding-intron (ENSMUSG00000037989.15, intron 2 of 27) 32956 ENSMUSG00000037989.15 ENSMUSG00000037989 ENSMUST00000159633 Wnk2 protein_coding Interval_156609 chr8 54529347 54530423 + 0 NA exon (ENSMUSG00000054408.9, exon 1 of 5) protein_coding-exon (ENSMUSG00000054408.9, exon 1 of 5) 113 ENSMUSG00000054408.9 ENSMUSG00000054408 ENSMUST00000067476 Spcs3 protein_coding Interval_78059 chr18 7596500 7596815 + 0 NA intron (ENSMUSG00000057440.8, intron 3 of 15) protein_coding-intron (ENSMUSG00000057440.8, intron 1 of 16) 15141 ENSMUSG00000094334.2 ENSMUSG00000094334 ENSMUST00000072582 Fabp5l2 processed_pseudogene Interval_44474 chr13 45156328 45156706 + 0 NA Intergenic Intergenic 31019 ENSMUSG00000098136.1 ENSMUSG00000098136 ENSMUST00000182830 Gm8513 processed_pseudogene Interval_79670 chr18 34415706 34416839 + 0 NA intron (ENSMUSG00000014503.15, intron 4 of 4) protein_coding-intron (ENSMUSG00000014503.15, intron 4 of 14) 7783 ENSMUSG00000014503.15 ENSMUSG00000014503 ENSMUST00000166156 Pkd2l2 protein_coding Interval_131428 chr5 137122540 137123969 + 0 NA Intergenic Intergenic -7045 ENSMUSG00000043279.9 ENSMUSG00000043279 ENSMUST00000152207 Trim56 protein_coding Interval_117815 chr4 126378379 126378559 + 0 NA intron (ENSMUSG00000028842.15, intron 2 of 3) protein_coding-intron (ENSMUSG00000028842.15, intron 5 of 18) 25866 ENSMUSG00000028842.15 ENSMUSG00000028842 ENSMUST00000123233 Ago3 protein_coding Interval_74520 chr17 52727666 52729549 + 0 NA intron (ENSMUSG00000035580.10, intron 2 of 15) protein_coding-intron (ENSMUSG00000035580.10, intron 2 of 15) -125947 ENSMUSG00000098552.1 ENSMUSG00000098552 ENSMUST00000183438 Gm27217 antisense Interval_69316 chr16 92163964 92164485 + 0 NA intron (ENSMUSG00000116747.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000116747.1, intron 1 of 2) 9977 ENSMUSG00000116608.1 ENSMUSG00000116608 ENSMUST00000232211 Gm41495 lincRNA Interval_167716 chr9 72254209 72255883 + 0 NA Intergenic Intergenic 2093 ENSMUSG00000089530.1 ENSMUSG00000089530 ENSMUST00000158905 Gm25163 snRNA Interval_157576 chr8 71507288 71508429 + 0 NA exon (ENSMUSG00000034845.6, exon 3 of 6) protein_coding-exon (ENSMUSG00000034845.6, exon 3 of 6) 3894 ENSMUSG00000034845.6 ENSMUSG00000034845 ENSMUST00000048452 Plvap protein_coding Interval_72295 chr17 29022380 29022624 + 0 NA TTS (ENSMUSG00000087308.1) lincRNA-TTS (ENSMUSG00000087308.1) 1209 ENSMUSG00000087308.1 ENSMUSG00000087308 ENSMUST00000130607 Gm16195 lincRNA Interval_4664 chr1 75804042 75804980 + 0 NA Intergenic Intergenic 168121 ENSMUSG00000082012.1 ENSMUSG00000082012 ENSMUST00000121823 Gm5257 processed_pseudogene Interval_33617 chr11 117541342 117541605 + 0 NA Intergenic Intergenic 17870 ENSMUSG00000085419.1 ENSMUSG00000085419 ENSMUST00000132261 Gm11734 lincRNA Interval_7586 chr1 132346305 132347066 + 0 NA exon (ENSMUSG00000100658.1, exon 3 of 3) lincRNA-exon (ENSMUSG00000100658.1, exon 3 of 3) 4662 ENSMUSG00000100658.1 ENSMUSG00000100658 ENSMUST00000189288 F730311O21Rik lincRNA Interval_6143 chr1 97979402 97979895 + 0 NA intron (ENSMUSG00000026335.16, intron 1 of 25) protein_coding-intron (ENSMUSG00000026335.16, intron 1 of 25) -30259 ENSMUSG00000089782.1 ENSMUSG00000089782 ENSMUST00000162698 Gm3531 processed_pseudogene Interval_149116 chr7 93994135 93994773 + 0 NA Intergenic Intergenic -48298 ENSMUSG00000108532.1 ENSMUSG00000108532 ENSMUST00000206579 Gm32647 lincRNA Interval_110034 chr3 152680650 152681077 + 0 NA exon (ENSMUSG00000097745.1, exon 4 of 4) antisense-exon (ENSMUSG00000097745.1, exon 4 of 4) 13950 ENSMUSG00000097745.1 ENSMUSG00000097745 ENSMUST00000181093 AI115009 antisense Interval_114414 chr4 75556368 75556591 + 0 NA Intergenic Intergenic 175719 ENSMUSG00000084026.1 ENSMUSG00000084026 ENSMUST00000120554 Gm11259 processed_pseudogene Interval_137359 chr6 71684504 71685306 + 0 NA Intergenic Intergenic 1607 ENSMUSG00000108813.1 ENSMUSG00000108813 ENSMUST00000205423 Rpl19-ps9 processed_pseudogene Interval_123906 chr5 36422584 36422805 + 0 NA Intergenic Intergenic 42159 ENSMUSG00000039563.6 ENSMUSG00000039563 ENSMUST00000151434 2210406O10Rik lincRNA Interval_74955 chr17 57988633 57989222 + 0 NA intron (ENSMUSG00000038048.8, intron 3 of 23) protein_coding-intron (ENSMUSG00000038048.8, intron 3 of 23) -149706 ENSMUSG00000071052.4 ENSMUSG00000071052 ENSMUST00000095218 Rpl7a-ps5 processed_pseudogene Interval_137564 chr6 73264899 73265397 + 0 NA TTS (ENSMUSG00000052738.14) protein_coding-TTS (ENSMUSG00000052738.14) 16488 ENSMUSG00000052738.14 ENSMUSG00000052738 ENSMUST00000173409 Suclg1 protein_coding Interval_37370 chr12 65573953 65575045 + 0 NA Intergenic Intergenic 8409 ENSMUSG00000077270.1 ENSMUSG00000077270 ENSMUST00000104082 Gm22782 snoRNA Interval_55914 chr14 102070246 102070603 + 0 NA Intergenic Intergenic -87661 ENSMUSG00000115584.1 ENSMUSG00000115584 ENSMUST00000226515 Gm5854 processed_pseudogene Interval_43186 chr13 24942601 24943112 + 0 NA promoter-TSS (ENSMUSG00000021340.13) protein_coding-promoter-TSS (ENSMUSG00000021340.13) -5195 ENSMUSG00000035936.6 ENSMUSG00000035936 ENSMUST00000037615 Aldh5a1 protein_coding Interval_56566 chr14 120373231 120374209 + 0 NA intron (ENSMUSG00000022139.17, intron 2 of 2) protein_coding-intron (ENSMUSG00000022139.17, intron 2 of 8) -5521 ENSMUSG00000022139.17 ENSMUSG00000022139 ENSMUST00000227153 Mbnl2 protein_coding Interval_64245 chr16 9749463 9750006 + 0 NA intron (ENSMUSG00000059003.12, intron 4 of 13) protein_coding-intron (ENSMUSG00000059003.12, intron 2 of 11) 245189 ENSMUSG00000059003.12 ENSMUSG00000059003 ENSMUST00000197242 Grin2a protein_coding Interval_125165 chr5 65026113 65026876 + 0 NA intron (ENSMUSG00000029185.14, intron 8 of 13) protein_coding-intron (ENSMUSG00000029185.14, intron 8 of 13) 53844 ENSMUSG00000106186.1 ENSMUSG00000106186 ENSMUST00000197119 Gm43627 TEC Interval_89863 chr2 26078923 26079935 + 0 NA intron (ENSMUSG00000026932.14, intron 2 of 2) protein_coding-intron (ENSMUSG00000026932.14, intron 2 of 5) 12390 ENSMUSG00000026932.14 ENSMUSG00000026932 ENSMUST00000149408 Nacc2 protein_coding Interval_46371 chr13 64284675 64284917 + 0 NA intron (ENSMUSG00000021482.10, intron 3 of 3) protein_coding-intron (ENSMUSG00000021482.10, intron 4 of 4) -6281 ENSMUSG00000113816.1 ENSMUSG00000113816 ENSMUST00000222936 Gm47003 antisense Interval_50752 chr14 19130787 19131268 + 0 NA intron (ENSMUSG00000091929.2, intron 3 of 4) unprocessed_pseudogene-intron (ENSMUSG00000091929.2, intron 3 of 4) 3227 ENSMUSG00000091929.2 ENSMUSG00000091929 ENSMUST00000164061 Gm8582 unprocessed_pseudogene Interval_116144 chr4 108100474 108100798 + 0 NA intron (ENSMUSG00000028603.15, intron 4 of 7) protein_coding-intron (ENSMUSG00000028603.15, intron 5 of 15) 13279 ENSMUSG00000098980.1 ENSMUSG00000098980 ENSMUST00000183919 Mir6397 miRNA Interval_160745 chr8 111923511 111923867 + 0 NA intron (ENSMUSG00000031951.8, intron 2 of 6) protein_coding-intron (ENSMUSG00000031951.8, intron 2 of 6) 4471 ENSMUSG00000031951.8 ENSMUSG00000031951 ENSMUST00000213050 Tmem231 protein_coding Interval_58283 chr15 31619816 31620598 + 0 NA exon (ENSMUSG00000039065.11, exon 2 of 2) protein_coding-exon (ENSMUSG00000039065.11, exon 2 of 2) -1765 ENSMUSG00000114995.1 ENSMUSG00000114995 ENSMUST00000227896 Gm49284 TEC Interval_116073 chr4 107416164 107416981 + 0 NA TTS (ENSMUSG00000028614.14) protein_coding-TTS (ENSMUSG00000028614.14) -18000 ENSMUSG00000092723.1 ENSMUSG00000092723 ENSMUST00000174982 Gm24804 miRNA Interval_76780 chr17 83998931 83999356 + 0 NA intron (ENSMUSG00000117431.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000117431.1, intron 1 of 1) -9751 ENSMUSG00000117431.1 ENSMUSG00000117431 ENSMUST00000235072 8430430B14Rik lincRNA Interval_154292 chr8 14062342 14062741 + 0 NA intron (ENSMUSG00000051978.9, intron 3 of 4) protein_coding-intron (ENSMUSG00000051978.9, intron 3 of 5) 5277 ENSMUSG00000109982.1 ENSMUSG00000109982 ENSMUST00000210109 Gm45520 TEC Interval_168509 chr9 82854211 82854679 + 0 NA Intergenic Intergenic 24905 ENSMUSG00000032251.12 ENSMUSG00000032251 ENSMUST00000034783 Irak1bp1 protein_coding Interval_25826 chr11 51985431 51986211 + 0 NA TTS (ENSMUSG00000020390.12) protein_coding-TTS (ENSMUSG00000020390.12) 14941 ENSMUSG00000020390.12 ENSMUSG00000020390 ENSMUST00000147833 Ube2b protein_coding Interval_19098 chr10 94533364 94533800 + 0 NA intron (ENSMUSG00000020023.18, intron 1 of 3) protein_coding-intron (ENSMUSG00000020023.18, intron 1 of 3) -17270 ENSMUSG00000020023.18 ENSMUSG00000020023 ENSMUST00000117929 Tmcc3 protein_coding Interval_132200 chr5 143299830 143300141 + 0 NA Intergenic Intergenic -6362 ENSMUSG00000093910.2 ENSMUSG00000093910 ENSMUST00000180336 Zfp853 protein_coding Interval_72289 chr17 28993248 28994468 + 0 NA intron (ENSMUSG00000024006.17, intron 2 of 10) protein_coding-intron (ENSMUSG00000024006.17, intron 2 of 13) -2475 ENSMUSG00000024006.17 ENSMUSG00000024006 ENSMUST00000233723 Stk38 protein_coding Interval_131908 chr5 140735040 140736468 + 0 NA exon (ENSMUSG00000050022.16, exon 1 of 2) protein_coding-intron (ENSMUSG00000050022.16, intron 1 of 6) 11616 ENSMUSG00000050022.16 ENSMUSG00000050022 ENSMUST00000176035 Amz1 protein_coding Interval_68424 chr16 76344453 76345336 + 0 NA intron (ENSMUSG00000048490.14, intron 2 of 3) protein_coding-intron (ENSMUSG00000048490.14, intron 2 of 3) 28932 ENSMUSG00000048490.14 ENSMUSG00000048490 ENSMUST00000145649 Nrip1 protein_coding Interval_58519 chr15 35450049 35450573 + 0 NA intron (ENSMUSG00000037646.10, intron 13 of 28) protein_coding-intron (ENSMUSG00000037646.10, intron 13 of 61) -37089 ENSMUSG00000089133.1 ENSMUSG00000089133 ENSMUST00000158508 Gm24771 snoRNA Interval_37319 chr12 65108422 65109040 + 0 NA intron (ENSMUSG00000055884.8, intron 14 of 22) protein_coding-intron (ENSMUSG00000055884.8, intron 14 of 22) -8725 ENSMUSG00000112992.1 ENSMUSG00000112992 ENSMUST00000223249 Gm47869 processed_pseudogene Interval_57493 chr15 11785929 11786867 + 0 NA Intergenic Intergenic -82695 ENSMUSG00000115585.1 ENSMUSG00000115585 ENSMUST00000228108 Gm41271 processed_transcript Interval_81433 chr18 60730182 60730805 + 0 NA intron (ENSMUSG00000054008.9, intron 1 of 14) protein_coding-intron (ENSMUSG00000054008.9, intron 1 of 1) 2657 ENSMUSG00000054008.9 ENSMUSG00000054008 ENSMUST00000237070 Ndst1 protein_coding Interval_151916 chr7 127528009 127528374 + 0 NA TTS (ENSMUSG00000065259.1) snoRNA-TTS (ENSMUSG00000065259.1) 317 ENSMUSG00000065259.1 ENSMUSG00000065259 ENSMUST00000083325 Snora30 snoRNA Interval_26212 chr11 55136618 55139233 + 0 NA intron (ENSMUSG00000049491.15, intron 6 of 11) protein_coding-intron (ENSMUSG00000049491.15, intron 5 of 10) 881 ENSMUSG00000085531.1 ENSMUSG00000085531 ENSMUST00000155883 Slc36a3os antisense Interval_62294 chr15 89498637 89500744 + 0 NA promoter-TSS (ENSMUSG00000022623.17) protein_coding-promoter-TSS (ENSMUSG00000022623.17) 1741 ENSMUSG00000118456.1 ENSMUSG00000118456 ENSMUST00000238218 Gm41381 lincRNA Interval_174129 chrX 135948898 135950425 + 0 NA Intergenic Intergenic -38886 ENSMUSG00000083223.1 ENSMUSG00000083223 ENSMUST00000117300 Gm15016 processed_pseudogene Interval_128207 chr5 111730885 111731129 + 0 NA Intergenic Intergenic -2917 ENSMUSG00000096949.1 ENSMUSG00000096949 ENSMUST00000180627 Gm26897 protein_coding Interval_53588 chr14 59612893 59613375 + 0 NA Intergenic Intergenic 9533 ENSMUSG00000114804.1 ENSMUSG00000114804 ENSMUST00000223850 Gm18073 processed_pseudogene Interval_21050 chr10 125419018 125419260 + 0 NA Intergenic Intergenic 30600 ENSMUSG00000111943.1 ENSMUSG00000111943 ENSMUST00000220021 Gm47862 TEC Interval_46477 chr13 66450696 66451791 + 0 NA TTS (ENSMUSG00000114616.1) lincRNA-TTS (ENSMUSG00000114616.1) 4111 ENSMUSG00000114343.1 ENSMUSG00000114343 ENSMUST00000225113 Gm48322 processed_pseudogene Interval_56956 chr14 124032980 124034247 + 0 NA intron (ENSMUSG00000025551.13, intron 3 of 4) protein_coding-intron (ENSMUSG00000025551.13, intron 3 of 4) 45978 ENSMUSG00000099994.1 ENSMUSG00000099994 ENSMUST00000190088 1700024B18Rik antisense Interval_23326 chr11 21421171 21421466 + 0 NA Intergenic Intergenic 30036 ENSMUSG00000084412.1 ENSMUSG00000084412 ENSMUST00000120335 Gm12044 processed_pseudogene Interval_125459 chr5 67294690 67295668 + 0 NA Intergenic Intergenic -20547 ENSMUSG00000029221.15 ENSMUSG00000029221 ENSMUST00000161169 Slc30a9 protein_coding Interval_167231 chr9 66370319 66371069 + 0 NA intron (ENSMUSG00000038664.16, intron 1 of 1) protein_coding-intron (ENSMUSG00000038664.16, intron 1 of 77) -9952 ENSMUSG00000084437.1 ENSMUSG00000084437 ENSMUST00000122488 Gm23428 snRNA Interval_48487 chr13 99384207 99385351 + 0 NA intron (ENSMUSG00000041632.7, intron 4 of 5) protein_coding-intron (ENSMUSG00000041632.7, intron 4 of 10) 27885 ENSMUSG00000097828.2 ENSMUSG00000097828 ENSMUST00000225937 6430562O15Rik processed_transcript Interval_167876 chr9 73235982 73236994 + 0 NA intron (ENSMUSG00000098875.1, intron 3 of 3) lincRNA-intron (ENSMUSG00000098875.1, intron 3 of 3) 44005 ENSMUSG00000098875.1 ENSMUSG00000098875 ENSMUST00000183507 Gm27211 lincRNA Interval_29716 chr11 86357217 86358840 + 0 NA promoter-TSS (ENSMUSG00000034297.14) protein_coding-promoter-TSS (ENSMUSG00000034297.14) 24822 ENSMUSG00000088230.1 ENSMUSG00000088230 ENSMUST00000157605 Gm25427 misc_RNA Interval_165499 chr9 48723677 48723948 + 0 NA intron (ENSMUSG00000066687.5, intron 3 of 6) protein_coding-intron (ENSMUSG00000066687.5, intron 3 of 6) 112410 ENSMUSG00000066687.5 ENSMUSG00000066687 ENSMUST00000216150 Zbtb16 protein_coding Interval_8379 chr1 138547771 138548773 + 0 NA intron (ENSMUSG00000026393.10, intron 2 of 6) protein_coding-intron (ENSMUSG00000026393.10, intron 2 of 7) 6436 ENSMUSG00000102651.1 ENSMUSG00000102651 ENSMUST00000194804 Gm37080 TEC Interval_81721 chr18 63896324 63896952 + 0 NA intron (ENSMUSG00000040560.10, intron 20 of 26) protein_coding-intron (ENSMUSG00000040560.10, intron 21 of 27) 2393 ENSMUSG00000118258.1 ENSMUSG00000118258 ENSMUST00000237352 Gm19076 processed_pseudogene Interval_104192 chr3 60259644 60260763 + 0 NA Intergenic Intergenic 82890 ENSMUSG00000107270.1 ENSMUSG00000107270 ENSMUST00000201864 Tgif1-ps processed_pseudogene Interval_25842 chr11 52080101 52080694 + 0 NA intron (ENSMUSG00000020389.19, intron 5 of 5) protein_coding-intron (ENSMUSG00000020389.19, intron 13 of 13) 18756 ENSMUSG00000093006.2 ENSMUSG00000093006 ENSMUST00000175265 Gm24157 miRNA Interval_28022 chr11 72300824 72302550 + 0 NA promoter-TSS (ENSMUSG00000040483.15) protein_coding-promoter-TSS (ENSMUSG00000040483.15) 58 ENSMUSG00000040483.15 ENSMUSG00000040483 ENSMUST00000142921 Xaf1 protein_coding Interval_94240 chr2 86179617 86180551 + 0 NA exon (ENSMUSG00000075199.3, exon 2 of 2) protein_coding-exon (ENSMUSG00000075199.3, exon 2 of 2) -2270 ENSMUSG00000075200.2 ENSMUSG00000075200 ENSMUST00000099906 Olfr1044 protein_coding Interval_22368 chr11 9193604 9193834 + 0 NA intron (ENSMUSG00000004668.14, intron 1 of 5) protein_coding-intron (ENSMUSG00000004668.14, intron 1 of 61) 268 ENSMUSG00000004668.14 ENSMUSG00000004668 ENSMUST00000151522 Abca13 protein_coding Interval_37294 chr12 64903913 64904212 + 0 NA Intergenic Intergenic -16722 ENSMUSG00000047227.5 ENSMUSG00000047227 ENSMUST00000220928 Gm527 protein_coding Interval_106597 chr3 97590773 97591023 + 0 NA intron (ENSMUSG00000028089.5, intron 8 of 15) protein_coding-intron (ENSMUSG00000028089.5, intron 8 of 22) -19034 ENSMUSG00000105004.1 ENSMUSG00000105004 ENSMUST00000198613 Gm43075 TEC Interval_49825 chr13 116711231 116712657 + 0 NA Intergenic Intergenic -34239 ENSMUSG00000114731.1 ENSMUSG00000114731 ENSMUST00000224048 Gm47914 lincRNA Interval_156269 chr8 46675623 46675909 + 0 NA intron (ENSMUSG00000097534.3, intron 3 of 4) bidirectional_promoter_lncRNA-intron (ENSMUSG00000097534.3, intron 3 of 4) 58475 ENSMUSG00000031628.9 ENSMUSG00000031628 ENSMUST00000210534 Casp3 protein_coding Interval_135957 chr6 49089717 49089991 + 0 NA intron (ENSMUSG00000029814.10, intron 2 of 2) protein_coding-intron (ENSMUSG00000029814.10, intron 12 of 14) 4357 ENSMUSG00000029814.10 ENSMUSG00000029814 ENSMUST00000203680 Igf2bp3 protein_coding Interval_146927 chr7 55930577 55930831 + 0 NA TTS (ENSMUSG00000030452.16) protein_coding-TTS (ENSMUSG00000030452.16) -1796 ENSMUSG00000108701.1 ENSMUSG00000108701 ENSMUST00000206417 Gm44616 TEC Interval_142506 chr6 142944435 142944765 + 0 NA intron (ENSMUSG00000030283.7, intron 1 of 4) protein_coding-intron (ENSMUSG00000030283.7, intron 1 of 4) 19541 ENSMUSG00000030283.7 ENSMUSG00000030283 ENSMUST00000147058 St8sia1 protein_coding Interval_129983 chr5 123502769 123503302 + 0 NA intron (ENSMUSG00000063409.12, intron 7 of 11) protein_coding-intron (ENSMUSG00000063409.12, intron 7 of 11) -5360 ENSMUSG00000086753.1 ENSMUSG00000086753 ENSMUST00000134552 Gm15751 sense_overlapping Interval_166038 chr9 55839865 55840076 + 0 NA intron (ENSMUSG00000034007.10, intron 15 of 32) protein_coding-intron (ENSMUSG00000034007.10, intron 13 of 30) 98140 ENSMUSG00000034007.10 ENSMUSG00000034007 ENSMUST00000215323 Scaper protein_coding Interval_52593 chr14 47765766 47766122 + 0 NA Intergenic Intergenic -8451 ENSMUSG00000115719.1 ENSMUSG00000115719 ENSMUST00000226197 4930538L07Rik lincRNA Interval_121594 chr5 3721500 3722060 + 0 NA intron (ENSMUSG00000040351.11, intron 10 of 18) protein_coding-intron (ENSMUSG00000040351.11, intron 10 of 19) 25816 ENSMUSG00000092698.1 ENSMUSG00000092698 ENSMUST00000174957 Gm22926 miRNA Interval_163620 chr9 22624865 22625608 + 0 NA intron (ENSMUSG00000035919.16, intron 10 of 22) protein_coding-intron (ENSMUSG00000035919.16, intron 9 of 21) 45292 ENSMUSG00000089958.1 ENSMUSG00000089958 ENSMUST00000160140 Gm16165 processed_pseudogene Interval_15870 chr10 58594456 58596079 + 0 NA Intergenic Intergenic 40000 ENSMUSG00000112670.1 ENSMUSG00000112670 ENSMUST00000219887 Gm18042 processed_pseudogene Interval_157872 chr8 75120689 75121056 + 0 NA promoter-TSS (ENSMUSG00000005410.6) protein_coding-promoter-TSS (ENSMUSG00000005410.6) 11248 ENSMUSG00000005410.6 ENSMUSG00000005410 ENSMUST00000211912 Mcm5 protein_coding Interval_104899 chr3 78817248 78817461 + 0 NA Intergenic Intergenic -24870 ENSMUSG00000088463.1 ENSMUSG00000088463 ENSMUST00000157838 Gm24749 misc_RNA Interval_31716 chr11 102406947 102408968 + 0 NA promoter-TSS (ENSMUSG00000018677.9) protein_coding-promoter-TSS (ENSMUSG00000018677.9) -1141 ENSMUSG00000018677.9 ENSMUSG00000018677 ENSMUST00000147860 Slc25a39 protein_coding Interval_147045 chr7 59318081 59318362 + 0 NA promoter-TSS (ENSMUSG00000109157.1) TEC-promoter-TSS (ENSMUSG00000109157.1) -410 ENSMUSG00000109157.1 ENSMUSG00000109157 ENSMUST00000208008 Gm44829 TEC Interval_12570 chr10 3366042 3367626 + 0 NA exon (ENSMUSG00000040653.6, exon 1 of 4) protein_coding-exon (ENSMUSG00000040653.6, exon 1 of 4) 290 ENSMUSG00000040653.6 ENSMUSG00000040653 ENSMUST00000217573 Ppp1r14c protein_coding Interval_32042 chr11 104655510 104655957 + 0 NA intron (ENSMUSG00000020689.4, intron 6 of 10) protein_coding-intron (ENSMUSG00000020689.4, intron 10 of 14) 18344 ENSMUSG00000020689.4 ENSMUSG00000020689 ENSMUST00000127140 Itgb3 protein_coding Interval_25762 chr11 51584069 51585373 + 0 NA promoter-TSS (ENSMUSG00000020359.13) protein_coding-promoter-TSS (ENSMUSG00000020359.13) 10289 ENSMUSG00000063564.13 ENSMUSG00000063564 ENSMUST00000151098 Col23a1 protein_coding Interval_29219 chr11 81634105 81635112 + 0 NA intron (ENSMUSG00000020704.13, intron 1 of 9) protein_coding-intron (ENSMUSG00000020704.13, intron 1 of 9) 47247 ENSMUSG00000087534.1 ENSMUSG00000087534 ENSMUST00000156193 Gm11418 antisense Interval_75788 chr17 71376174 71376432 + 0 NA exon (ENSMUSG00000024054.14, exon 2 of 2) protein_coding-exon (ENSMUSG00000024054.14, exon 2 of 2) -7467 ENSMUSG00000102863.1 ENSMUSG00000102863 ENSMUST00000191623 Gm37639 TEC Interval_46988 chr13 73961334 73962277 + 0 NA TTS (ENSMUSG00000057649.6) protein_coding-TTS (ENSMUSG00000057649.6) 1928 ENSMUSG00000113274.1 ENSMUSG00000113274 ENSMUST00000222479 Gm41002 antisense Interval_129947 chr5 123245408 123246106 + 0 NA TTS (ENSMUSG00000029440.15) protein_coding-TTS (ENSMUSG00000029440.15) 10056 ENSMUSG00000094664.1 ENSMUSG00000094664 ENSMUST00000148282 Rpl35a-ps6 processed_pseudogene Interval_144032 chr7 19073434 19073788 + 0 NA intron (ENSMUSG00000040866.13, intron 4 of 4) protein_coding-intron (ENSMUSG00000040866.13, intron 5 of 5) -4382 ENSMUSG00000030410.16 ENSMUSG00000030410 ENSMUST00000138997 Dmwd protein_coding Interval_69366 chr16 92497515 92499512 + 0 NA exon (ENSMUSG00000022949.9, exon 1 of 6) protein_coding-exon (ENSMUSG00000022949.9, exon 1 of 6) 12777 ENSMUSG00000022949.9 ENSMUSG00000022949 ENSMUST00000023670 Clic6 protein_coding Interval_69675 chr16 95264191 95264646 + 0 NA intron (ENSMUSG00000062609.14, intron 2 of 3) protein_coding-intron (ENSMUSG00000062609.14, intron 2 of 3) 6227 ENSMUSG00000062609.14 ENSMUSG00000062609 ENSMUST00000138329 Kcnj15 protein_coding Interval_152046 chr7 128541887 128543542 + 0 NA intron (ENSMUSG00000030847.8, intron 3 of 3) protein_coding-intron (ENSMUSG00000030847.8, intron 3 of 3) 3782 ENSMUSG00000108614.1 ENSMUSG00000108614 ENSMUST00000206512 2610306O10Rik TEC Interval_72955 chr17 33795380 33795963 + 0 NA Intergenic Intergenic -9947 ENSMUSG00000092602.1 ENSMUSG00000092602 ENSMUST00000173637 4931413I07Rik lincRNA Interval_70317 chr17 8433310 8435328 + 0 NA promoter-TSS (ENSMUSG00000062327.10) protein_coding-promoter-TSS (ENSMUSG00000062327.10) -1092 ENSMUSG00000062327.10 ENSMUSG00000062327 ENSMUST00000177118 T protein_coding Interval_139864 chr6 112050722 112050934 + 0 NA Intergenic Intergenic 37366 ENSMUSG00000107893.1 ENSMUSG00000107893 ENSMUST00000204195 Gm44192 TEC Interval_149515 chr7 99280108 99280666 + 0 NA intron (ENSMUSG00000055407.14, intron 1 of 3) protein_coding-intron (ENSMUSG00000055407.14, intron 1 of 3) 11255 ENSMUSG00000055407.14 ENSMUSG00000055407 ENSMUST00000209094 Map6 protein_coding Interval_33467 chr11 116696413 116698343 + 0 NA Intergenic Intergenic -2769 ENSMUSG00000057286.6 ENSMUSG00000057286 ENSMUST00000145441 St6galnac2 protein_coding Interval_161507 chr8 120807675 120808133 + 0 NA intron (ENSMUSG00000092329.1, intron 1 of 15) protein_coding-intron (ENSMUSG00000092329.1, intron 1 of 15) 71545 ENSMUSG00000041515.10 ENSMUSG00000041515 ENSMUST00000160594 Irf8 protein_coding Interval_17732 chr10 79802203 79802827 + 0 NA intron (ENSMUSG00000035863.14, intron 1 of 6) protein_coding-intron (ENSMUSG00000035863.14, intron 1 of 8) -7859 ENSMUSG00000112828.1 ENSMUSG00000112828 ENSMUST00000219552 Gm48495 antisense Interval_24247 chr11 31768058 31768373 + 0 NA Intergenic Intergenic 56309 ENSMUSG00000085772.7 ENSMUSG00000085772 ENSMUST00000126265 D630024D03Rik lincRNA Interval_111712 chr4 26493691 26494462 + 0 NA Intergenic Intergenic 7583 ENSMUSG00000081985.1 ENSMUSG00000081985 ENSMUST00000120523 Gng2-ps1 processed_pseudogene Interval_154551 chr8 19331990 19332578 + 0 NA Intergenic Intergenic 31607 ENSMUSG00000081154.2 ENSMUSG00000081154 ENSMUST00000212360 Defa-ps13 transcribed_processed_pseudogene Interval_114513 chr4 81799369 81799557 + 0 NA Intergenic Intergenic 56317 ENSMUSG00000087540.1 ENSMUSG00000087540 ENSMUST00000144875 Gm11412 lincRNA Interval_115542 chr4 100527231 100528295 + 0 NA promoter-TSS (ENSMUSG00000085871.1) antisense-promoter-TSS (ENSMUSG00000085871.1) 38 ENSMUSG00000085871.1 ENSMUSG00000085871 ENSMUST00000142634 Ube2uos antisense Interval_84087 chr19 7134378 7137286 + 0 NA intron (ENSMUSG00000036278.7, intron 3 of 10) protein_coding-intron (ENSMUSG00000036278.7, intron 3 of 10) -30103 ENSMUSG00000047787.8 ENSMUSG00000047787 ENSMUST00000113383 Flrt1 protein_coding Interval_20083 chr10 113678168 113678833 + 0 NA Intergenic Intergenic 51802 ENSMUSG00000112438.1 ENSMUSG00000112438 ENSMUST00000219149 Gm40810 processed_pseudogene Interval_151869 chr7 127223267 127225891 + 0 NA intron (ENSMUSG00000000486.13, intron 1 of 5) protein_coding-intron (ENSMUSG00000000486.13, intron 1 of 5) 8551 ENSMUSG00000000486.13 ENSMUSG00000000486 ENSMUST00000205570 Septin1 protein_coding Interval_27639 chr11 69223647 69224408 + 0 NA intron (ENSMUSG00000020890.11, intron 15 of 19) protein_coding-intron (ENSMUSG00000020890.11, intron 15 of 18) 12995 ENSMUSG00000020890.11 ENSMUSG00000020890 ENSMUST00000155457 Gucy2e protein_coding Interval_171212 chr9 115261554 115262333 + 0 NA intron (ENSMUSG00000032437.10, intron 5 of 15) protein_coding-intron (ENSMUSG00000032437.10, intron 5 of 15) 20038 ENSMUSG00000111564.1 ENSMUSG00000111564 ENSMUST00000214793 Stmn1-rs1 processed_pseudogene Interval_124750 chr5 53662423 53662655 + 0 NA Intergenic Intergenic 23907 ENSMUSG00000039191.12 ENSMUSG00000039191 ENSMUST00000202092 Rbpj protein_coding Interval_124390 chr5 45449665 45450793 + 0 NA promoter-TSS (ENSMUSG00000015806.12) protein_coding-promoter-TSS (ENSMUSG00000015806.12) -3522 ENSMUSG00000049530.6 ENSMUSG00000049530 ENSMUST00000053250 Clrn2 protein_coding Interval_153156 chr7 141923217 141925195 + 0 NA Intergenic Intergenic -21898 ENSMUSG00000025139.14 ENSMUSG00000025139 ENSMUST00000211231 Tollip protein_coding Interval_86044 chr19 35903515 35905134 + 0 NA intron (ENSMUSG00000094707.2, intron 2 of 5) lincRNA-intron (ENSMUSG00000094707.2, intron 2 of 4) 20245 ENSMUSG00000094707.2 ENSMUSG00000094707 ENSMUST00000238067 A830019P07Rik lincRNA Interval_84306 chr19 9966284 9966645 + 0 NA Intergenic Intergenic -16259 ENSMUSG00000024661.7 ENSMUSG00000024661 ENSMUST00000236403 Fth1 protein_coding Interval_71312 chr17 22107381 22107548 + 0 NA Intergenic Intergenic -37576 ENSMUSG00000117234.1 ENSMUSG00000117234 ENSMUST00000232840 Gm7818 processed_pseudogene Interval_21607 chr10 130535456 130536951 + 0 NA promoter-TSS (ENSMUSG00000112195.1) processed_pseudogene-promoter-TSS (ENSMUSG00000112195.1) -242 ENSMUSG00000112195.1 ENSMUSG00000112195 ENSMUST00000218754 Gm35405 processed_pseudogene Interval_134074 chr6 18819533 18819811 + 0 NA Intergenic Intergenic -4880 ENSMUSG00000071568.5 ENSMUSG00000071568 ENSMUST00000096101 Gm5874 processed_pseudogene Interval_45532 chr13 55687566 55688142 + 0 NA Intergenic Intergenic -5270 ENSMUSG00000045767.9 ENSMUSG00000045767 ENSMUST00000057844 B230219D22Rik protein_coding Interval_137711 chr6 81076186 81077272 + 0 NA Intergenic Intergenic 249591 ENSMUSG00000108040.1 ENSMUSG00000108040 ENSMUST00000204868 Gm43900 TEC Interval_116262 chr4 109125722 109126359 + 0 NA intron (ENSMUSG00000028559.17, intron 4 of 23) protein_coding-intron (ENSMUSG00000028559.17, intron 4 of 23) 35157 ENSMUSG00000088014.1 ENSMUSG00000088014 ENSMUST00000157389 Gm23743 misc_RNA Interval_7684 chr1 133037894 133038309 + 0 NA Intergenic Intergenic 12300 ENSMUSG00000100228.1 ENSMUSG00000100228 ENSMUST00000186115 Gm29257 processed_pseudogene Interval_68722 chr16 85010352 85010740 + 0 NA intron (ENSMUSG00000022892.11, intron 13 of 13) protein_coding-intron (ENSMUSG00000022892.11, intron 11 of 15) -11076 ENSMUSG00000115108.1 ENSMUSG00000115108 ENSMUST00000227026 Gm49228 processed_pseudogene Interval_74452 chr17 50741522 50742324 + 0 NA intron (ENSMUSG00000023923.10, intron 20 of 21) protein_coding-intron (ENSMUSG00000023923.10, intron 20 of 21) 43235 ENSMUSG00000044645.8 ENSMUSG00000044645 ENSMUST00000061681 Gm7334 processed_pseudogene Interval_88399 chr2 4771807 4772108 + 0 NA intron (ENSMUSG00000048186.14, intron 6 of 8) protein_coding-intron (ENSMUSG00000048186.14, intron 6 of 8) 54126 ENSMUSG00000048186.14 ENSMUSG00000048186 ENSMUST00000138322 Bend7 protein_coding Interval_70730 chr17 13959951 13960438 + 0 NA Intergenic Intergenic 11821 ENSMUSG00000067941.5 ENSMUSG00000067941 ENSMUST00000088809 Gm7168 protein_coding Interval_14546 chr10 35175212 35175400 + 0 NA Intergenic Intergenic 32993 ENSMUSG00000111216.1 ENSMUSG00000111216 ENSMUST00000216575 Gm47044 processed_pseudogene Interval_81033 chr18 53179591 53180098 + 0 NA intron (ENSMUSG00000034484.8, intron 1 of 6) protein_coding-intron (ENSMUSG00000034484.8, intron 1 of 14) 3455 ENSMUSG00000034484.8 ENSMUSG00000034484 ENSMUST00000236111 Snx2 protein_coding Interval_125527 chr5 68823518 68824365 + 0 NA Intergenic Intergenic 136448 ENSMUSG00000107117.1 ENSMUSG00000107117 ENSMUST00000202890 Gm43842 TEC Interval_94579 chr2 92422544 92422977 + 0 NA intron (ENSMUSG00000068742.11, intron 4 of 10) protein_coding-intron (ENSMUSG00000068742.11, intron 4 of 11) 9632 ENSMUSG00000068742.11 ENSMUSG00000068742 ENSMUST00000144842 Cry2 protein_coding Interval_112615 chr4 43578237 43579322 + 0 NA promoter-TSS (ENSMUSG00000028467.15) protein_coding-promoter-TSS (ENSMUSG00000028467.15) -242 ENSMUSG00000028467.15 ENSMUSG00000028467 ENSMUST00000130443 Gba2 protein_coding Interval_157259 chr8 68766563 68767012 + 0 NA Intergenic Intergenic -32080 ENSMUSG00000081745.1 ENSMUSG00000081745 ENSMUST00000121595 Gm15549 processed_pseudogene Interval_110057 chr3 152846004 152846192 + 0 NA intron (ENSMUSG00000039047.17, intron 12 of 14) protein_coding-intron (ENSMUSG00000039037.5, intron 3 of 4) 30119 ENSMUSG00000090040.1 ENSMUSG00000090040 ENSMUST00000162856 Gm16232 processed_pseudogene Interval_147487 chr7 67681847 67682125 + 0 NA promoter-TSS (ENSMUSG00000109115.1) TEC-promoter-TSS (ENSMUSG00000109115.1) -683 ENSMUSG00000109115.1 ENSMUSG00000109115 ENSMUST00000207774 Gm44669 TEC Interval_140255 chr6 115829510 115832548 + 0 NA intron (ENSMUSG00000107429.2, intron 1 of 3) protein_coding-intron (ENSMUSG00000030321.15, intron 1 of 8) -5102 ENSMUSG00000107429.2 ENSMUSG00000107429 ENSMUST00000203620 Gm44206 antisense Interval_126235 chr5 83544597 83544984 + 0 NA Intergenic Intergenic 79996 ENSMUSG00000104537.1 ENSMUSG00000104537 ENSMUST00000196348 Gm44303 miRNA Interval_66001 chr16 30834496 30836649 + 0 NA Intergenic Intergenic -13884 ENSMUSG00000116546.1 ENSMUSG00000116546 ENSMUST00000232290 Gm49755 lincRNA Interval_118484 chr4 131950668 131950881 + 0 NA exon (ENSMUSG00000028906.17, exon 10 of 10) protein_coding-exon (ENSMUSG00000028906.17, exon 10 of 10) -29246 ENSMUSG00000118394.1 ENSMUSG00000118394 ENSMUST00000238664 Gm50475 lincRNA Interval_112150 chr4 34956320 34957012 + 0 NA intron (ENSMUSG00000073910.10, intron 3 of 3) protein_coding-intron (ENSMUSG00000073910.10, intron 3 of 3) -5554 ENSMUSG00000086792.1 ENSMUSG00000086792 ENSMUST00000144419 Gm12364 antisense Interval_3202 chr1 54796000 54796369 + 0 NA intron (ENSMUSG00000052331.14, intron 2 of 7) protein_coding-intron (ENSMUSG00000052331.14, intron 2 of 27) 26966 ENSMUSG00000089245.1 ENSMUSG00000089245 ENSMUST00000158620 Gm24053 miRNA Interval_45631 chr13 56362324 56363411 + 0 NA promoter-TSS (ENSMUSG00000074885.4) lincRNA-promoter-TSS (ENSMUSG00000074885.4) -33 ENSMUSG00000074885.4 ENSMUSG00000074885 ENSMUST00000099476 Gm10782 lincRNA Interval_112476 chr4 41484647 41485148 + 0 NA Intergenic Intergenic 17771 ENSMUSG00000046312.4 ENSMUSG00000046312 ENSMUST00000149596 Myorg protein_coding Interval_82256 chr18 69682197 69682939 + 0 NA exon (ENSMUSG00000053477.17, exon 1 of 2) protein_coding-exon (ENSMUSG00000053477.17, exon 1 of 2) 95477 ENSMUSG00000064706.1 ENSMUSG00000064706 ENSMUST00000082772 Gm22508 misc_RNA Interval_131096 chr5 135077339 135078771 + 0 NA intron (ENSMUSG00000043614.13, intron 1 of 3) protein_coding-intron (ENSMUSG00000043614.13, intron 1 of 3) 211 ENSMUSG00000043614.13 ENSMUSG00000043614 ENSMUST00000076203 Vps37d protein_coding Interval_30532 chr11 94970285 94971376 + 0 NA promoter-TSS (ENSMUSG00000001508.15) protein_coding-promoter-TSS (ENSMUSG00000001508.15) 3237 ENSMUSG00000038994.6 ENSMUSG00000038994 ENSMUST00000038928 Hils1 protein_coding Interval_110778 chr4 8273740 8274382 + 0 NA Intergenic Intergenic -35020 ENSMUSG00000041261.9 ENSMUSG00000041261 ENSMUST00000066674 Car8 protein_coding Interval_9785 chr1 162216502 162216733 + 0 NA intron (ENSMUSG00000040265.16, intron 3 of 8) protein_coding-intron (ENSMUSG00000040265.16, intron 14 of 19) -1197 ENSMUSG00000070126.1 ENSMUSG00000070126 ENSMUST00000093618 Mir199a-2 miRNA Interval_132887 chr5 148523339 148524923 + 0 NA intron (ENSMUSG00000001687.15, intron 2 of 5) protein_coding-intron (ENSMUSG00000001687.15, intron 1 of 4) 27525 ENSMUSG00000001687.15 ENSMUSG00000001687 ENSMUST00000201597 Ubl3 protein_coding Interval_71962 chr17 27242548 27243196 + 0 NA promoter-TSS (ENSMUSG00000117916.1) lincRNA-promoter-TSS (ENSMUSG00000117916.1) -1982 ENSMUSG00000117794.1 ENSMUSG00000117794 ENSMUST00000236878 Gm50328 lincRNA Interval_157428 chr8 70292892 70294652 + 0 NA TTS (ENSMUSG00000003573.15) protein_coding-TTS (ENSMUSG00000003573.15) 8680 ENSMUSG00000057788.13 ENSMUSG00000057788 ENSMUST00000127076 Ddx49 protein_coding Interval_4236 chr1 72038370 72038983 + 0 NA promoter-TSS (ENSMUSG00000101764.1) lincRNA-promoter-TSS (ENSMUSG00000101764.1) 55 ENSMUSG00000101764.1 ENSMUSG00000101764 ENSMUST00000185689 4930556G22Rik lincRNA Interval_24202 chr11 31368804 31370328 + 0 NA promoter-TSS (ENSMUSG00000020303.2) protein_coding-promoter-TSS (ENSMUSG00000020303.2) 481 ENSMUSG00000020303.2 ENSMUSG00000020303 ENSMUST00000134199 Stc2 protein_coding Interval_115392 chr4 98504563 98505537 + 0 NA intron (ENSMUSG00000061859.17, intron 20 of 44) protein_coding-intron (ENSMUSG00000061859.17, intron 20 of 43) 52815 ENSMUSG00000094456.1 ENSMUSG00000094456 ENSMUST00000175382 Gm22625 miRNA Interval_135477 chr6 39538280 39538774 + 0 NA intron (ENSMUSG00000085058.2, intron 3 of 3) protein_coding-intron (ENSMUSG00000038456.9, intron 1 of 18) 11001 ENSMUSG00000085058.2 ENSMUSG00000085058 ENSMUST00000200951 8030453O22Rik processed_transcript Interval_38557 chr12 80115282 80117201 + 0 NA exon (ENSMUSG00000112545.1, exon 1 of 1) lincRNA-exon (ENSMUSG00000112545.1, exon 1 of 1) 378 ENSMUSG00000112545.1 ENSMUSG00000112545 ENSMUST00000219015 1300014J16Rik lincRNA Interval_47043 chr13 74718611 74718862 + 0 NA intron (ENSMUSG00000021585.10, intron 9 of 16) protein_coding-intron (ENSMUSG00000021585.10, intron 23 of 30) 50125 ENSMUSG00000113015.1 ENSMUSG00000113015 ENSMUST00000222599 Gm6296 processed_pseudogene Interval_50671 chr14 17971984 17972278 + 0 NA intron (ENSMUSG00000021779.17, intron 2 of 4) protein_coding-intron (ENSMUSG00000021779.17, intron 4 of 9) 9310 ENSMUSG00000021779.17 ENSMUSG00000021779 ENSMUST00000022304 Thrb protein_coding Interval_168367 chr9 79722980 79723344 + 0 NA Intergenic Intergenic -4442 ENSMUSG00000032332.17 ENSMUSG00000032332 ENSMUST00000141667 Col12a1 protein_coding Interval_152367 chr7 132456007 132456370 + 0 NA intron (ENSMUSG00000030849.18, intron 2 of 6) protein_coding-intron (ENSMUSG00000030849.18, intron 2 of 6) 10473 ENSMUSG00000108849.1 ENSMUSG00000108849 ENSMUST00000208383 Gm35147 lincRNA Interval_8162 chr1 136170023 136170583 + 0 NA intron (ENSMUSG00000041642.18, intron 2 of 4) protein_coding-intron (ENSMUSG00000041642.18, intron 30 of 34) 9945 ENSMUSG00000041642.18 ENSMUSG00000041642 ENSMUST00000165333 Kif21b protein_coding Interval_97684 chr2 142735226 142735985 + 0 NA intron (ENSMUSG00000038844.10, intron 17 of 26) protein_coding-intron (ENSMUSG00000038844.10, intron 17 of 25) -51291 ENSMUSG00000088134.1 ENSMUSG00000088134 ENSMUST00000157509 Gm22310 snoRNA Interval_159641 chr8 95966350 95966878 + 0 NA Intergenic Intergenic 45085 ENSMUSG00000110506.1 ENSMUSG00000110506 ENSMUST00000212919 Gm8637 processed_pseudogene Interval_166601 chr9 61249665 61250822 + 0 NA Intergenic Intergenic 43564 ENSMUSG00000111449.1 ENSMUSG00000111449 ENSMUST00000214812 Gm34105 lincRNA Interval_126318 chr5 86570501 86570719 + 0 NA intron (ENSMUSG00000048764.16, intron 2 of 2) protein_coding-intron (ENSMUSG00000048764.16, intron 2 of 10) 61773 ENSMUSG00000048764.16 ENSMUSG00000048764 ENSMUST00000173259 Tmprss11f protein_coding Interval_135456 chr6 39426553 39427459 + 0 NA Intergenic Intergenic -4587 ENSMUSG00000064900.1 ENSMUSG00000064900 ENSMUST00000082966 Gm25402 snoRNA Interval_16645 chr10 66800930 66801287 + 0 NA Intergenic Intergenic -8732 ENSMUSG00000112425.1 ENSMUSG00000112425 ENSMUST00000220426 Gm47896 lincRNA Interval_2724 chr1 43913657 43914506 + 0 NA Intergenic Intergenic 4805 ENSMUSG00000095757.1 ENSMUSG00000095757 ENSMUST00000179961 Gm24180 miRNA Interval_36617 chr12 51509275 51509651 + 0 NA Intergenic Intergenic -7863 ENSMUSG00000111959.1 ENSMUSG00000111959 ENSMUST00000220340 Gm18503 processed_pseudogene Interval_33625 chr11 117606327 117607110 + 0 NA Intergenic Intergenic -4529 ENSMUSG00000054418.6 ENSMUSG00000054418 ENSMUST00000155384 2900041M22Rik processed_transcript Interval_86204 chr19 37791231 37791449 + 0 NA Intergenic Intergenic 7074 ENSMUSG00000117939.1 ENSMUSG00000117939 ENSMUST00000236017 Gm9067 processed_pseudogene Interval_71543 chr17 24463284 24464430 + 0 NA intron (ENSMUSG00000024137.9, intron 1 of 12) protein_coding-intron (ENSMUSG00000024137.9, intron 1 of 12) -6578 ENSMUSG00000043445.7 ENSMUSG00000043445 ENSMUST00000234216 Pgp protein_coding Interval_2636 chr1 42713191 42715251 + 0 NA promoter-TSS (ENSMUSG00000097063.3) processed_transcript-promoter-TSS (ENSMUSG00000097063.3) -6169 ENSMUSG00000097063.3 ENSMUSG00000097063 ENSMUST00000192894 Pantr2 processed_transcript Interval_83385 chr18 84768163 84769428 + 0 NA Intergenic Intergenic 24728 ENSMUSG00000118075.1 ENSMUSG00000118075 ENSMUST00000236805 Gm38576 lincRNA Interval_75333 chr17 65913930 65914853 + 0 NA intron (ENSMUSG00000117229.1, intron 2 of 2) lincRNA-intron (ENSMUSG00000117229.1, intron 3 of 3) 804 ENSMUSG00000117229.1 ENSMUSG00000117229 ENSMUST00000233760 Gm35550 lincRNA Interval_21554 chr10 129846759 129847743 + 0 NA Intergenic Intergenic -1157 ENSMUSG00000049052.4 ENSMUSG00000049052 ENSMUST00000203571 Olfr812 protein_coding Interval_80128 chr18 37757893 37758192 + 0 NA exon (ENSMUSG00000102742.1, exon 1 of 4) protein_coding-exon (ENSMUSG00000102742.1, exon 1 of 4) -1694 ENSMUSG00000097330.2 ENSMUSG00000097330 ENSMUST00000192805 Gm26672 processed_transcript Interval_28696 chr11 77800616 77801605 + 0 NA promoter-TSS (ENSMUSG00000000631.20) protein_coding-promoter-TSS (ENSMUSG00000000631.20) -240 ENSMUSG00000000631.20 ENSMUSG00000000631 ENSMUST00000142571 Myo18a protein_coding Interval_101955 chr3 13168296 13168902 + 0 NA Intergenic Intergenic -119598 ENSMUSG00000102815.1 ENSMUSG00000102815 ENSMUST00000195003 Gm37813 TEC Interval_48032 chr13 95414413 95415658 + 0 NA Intergenic Intergenic 6641 ENSMUSG00000114122.1 ENSMUSG00000114122 ENSMUST00000223434 Gm48712 processed_pseudogene Interval_150058 chr7 105475811 105476369 + 0 NA Intergenic Intergenic -5837 ENSMUSG00000109735.1 ENSMUSG00000109735 ENSMUST00000210380 Gm45667 TEC Interval_16096 chr10 60718599 60721058 + 0 NA intron (ENSMUSG00000020100.15, intron 2 of 3) protein_coding-intron (ENSMUSG00000020100.15, intron 5 of 5) 32955 ENSMUSG00000020100.15 ENSMUSG00000020100 ENSMUST00000144989 Slc29a3 protein_coding Interval_158418 chr8 83607693 83608841 + 0 NA promoter-TSS (ENSMUSG00000005483.10) protein_coding-promoter-TSS (ENSMUSG00000005483.10) -286 ENSMUSG00000005483.10 ENSMUSG00000005483 ENSMUST00000212300 Dnajb1 protein_coding Interval_148598 chr7 83008183 83008552 + 0 NA Intergenic Intergenic 13532 ENSMUSG00000077149.1 ENSMUSG00000077149 ENSMUST00000103961 Gm22934 snoRNA Interval_118981 chr4 134839836 134840469 + 0 NA intron (ENSMUSG00000028826.14, intron 1 of 6) protein_coding-intron (ENSMUSG00000028826.14, intron 1 of 10) -28939 ENSMUSG00000028826.14 ENSMUSG00000028826 ENSMUST00000136113 Maco1 protein_coding Interval_126870 chr5 96266980 96267647 + 0 NA TTS (ENSMUSG00000029486.13) protein_coding-TTS (ENSMUSG00000029486.13) 57169 ENSMUSG00000029486.13 ENSMUSG00000029486 ENSMUST00000121477 Mrpl1 protein_coding Interval_89277 chr2 18734832 18735095 + 0 NA intron (ENSMUSG00000037708.16, intron 7 of 10) protein_coding-intron (ENSMUSG00000037708.16, intron 7 of 10) -24021 ENSMUSG00000081139.1 ENSMUSG00000081139 ENSMUST00000119424 Gm13333 processed_pseudogene Interval_113986 chr4 62276840 62277204 + 0 NA intron (ENSMUSG00000066152.11, intron 2 of 4) protein_coding-intron (ENSMUSG00000066152.11, intron 2 of 4) 12708 ENSMUSG00000096713.1 ENSMUSG00000096713 ENSMUST00000180367 Gm23148 snRNA Interval_155618 chr8 35212445 35213151 + 0 NA Intergenic Intergenic -5840 ENSMUSG00000109773.1 ENSMUSG00000109773 ENSMUST00000209645 Gm34474 lincRNA Interval_37045 chr12 56845359 56845543 + 0 NA intron (ENSMUSG00000035472.14, intron 4 of 10) protein_coding-intron (ENSMUSG00000035472.14, intron 3 of 9) -152487 ENSMUSG00000089894.2 ENSMUSG00000089894 ENSMUST00000159874 Gm15524 antisense Interval_59781 chr15 59202669 59202886 + 0 NA Intergenic Intergenic -8131 ENSMUSG00000025922.9 ENSMUSG00000025922 ENSMUST00000027054 Rpl7-ps8 processed_pseudogene Interval_134234 chr6 23364609 23365541 + 0 NA intron (ENSMUSG00000017978.18, intron 12 of 22) protein_coding-intron (ENSMUSG00000017978.18, intron 17 of 29) 113942 ENSMUSG00000106775.1 ENSMUSG00000106775 ENSMUST00000202489 C130093G08Rik TEC Interval_99134 chr2 157409729 157411743 + 0 NA Intergenic Intergenic -13380 ENSMUSG00000027646.15 ENSMUSG00000027646 ENSMUST00000109529 Src protein_coding Interval_87120 chr19 46282339 46283171 + 0 NA promoter-TSS (ENSMUSG00000025224.16) protein_coding-promoter-TSS (ENSMUSG00000025224.16) -15086 ENSMUSG00000086816.1 ENSMUSG00000086816 ENSMUST00000130184 Gm16726 antisense Interval_149103 chr7 93279802 93280187 + 0 NA Intergenic Intergenic 43956 ENSMUSG00000109175.1 ENSMUSG00000109175 ENSMUST00000208462 Gm44947 lincRNA Interval_87610 chr19 53720133 53721024 + 0 NA intron (ENSMUSG00000043639.15, intron 1 of 13) protein_coding-intron (ENSMUSG00000043639.15, intron 1 of 13) 43272 ENSMUSG00000043639.15 ENSMUSG00000043639 ENSMUST00000161856 Rbm20 protein_coding Interval_97520 chr2 138411742 138412242 + 0 NA intron (ENSMUSG00000062098.11, intron 1 of 3) protein_coding-intron (ENSMUSG00000062098.11, intron 1 of 5) 155330 ENSMUSG00000062098.11 ENSMUSG00000062098 ENSMUST00000075410 Btbd3 protein_coding Interval_77332 chr17 88034588 88034854 + 0 NA intron (ENSMUSG00000005371.15, intron 1 of 22) protein_coding-intron (ENSMUSG00000005371.15, intron 1 of 22) 30522 ENSMUSG00000005371.15 ENSMUSG00000005371 ENSMUST00000235056 Fbxo11 protein_coding Interval_17525 chr10 77509532 77510471 + 0 NA intron (ENSMUSG00000032977.9, intron 2 of 5) protein_coding-intron (ENSMUSG00000032977.9, intron 2 of 5) 5571 ENSMUSG00000032977.9 ENSMUSG00000032977 ENSMUST00000217681 Fam207a protein_coding Interval_119154 chr4 135882939 135883625 + 0 NA Intergenic Intergenic 8195 ENSMUSG00000083430.1 ENSMUSG00000083430 ENSMUST00000118683 Gm13006 processed_pseudogene Interval_168774 chr9 86879318 86881109 + 0 NA intron (ENSMUSG00000033419.16, intron 1 of 7) protein_coding-intron (ENSMUSG00000033419.16, intron 1 of 28) 226 ENSMUSG00000033419.16 ENSMUSG00000033419 ENSMUST00000191290 Snap91 protein_coding Interval_53296 chr14 55852270 55854507 + 0 NA promoter-TSS (ENSMUSG00000075592.10) protein_coding-promoter-TSS (ENSMUSG00000075592.10) -622 ENSMUSG00000075592.10 ENSMUSG00000075592 ENSMUST00000100529 Nynrin protein_coding Interval_132963 chr5 148985129 148986349 + 0 NA intron (ENSMUSG00000106892.1, intron 1 of 6) lincRNA-intron (ENSMUSG00000085237.2, intron 1 of 1) 9408 ENSMUSG00000106892.1 ENSMUSG00000106892 ENSMUST00000134031 Gm42791 protein_coding Interval_173704 chrX 102192837 102193576 + 0 NA Intergenic Intergenic -6469 ENSMUSG00000031320.9 ENSMUSG00000031320 ENSMUST00000152739 Rps4x protein_coding Interval_148962 chr7 90442774 90444425 + 0 NA promoter-TSS (ENSMUSG00000051451.6) protein_coding-promoter-TSS (ENSMUSG00000051451.6) -584 ENSMUSG00000051451.6 ENSMUSG00000051451 ENSMUST00000146291 Crebzf protein_coding Interval_10448 chr1 170942348 170942584 + 0 NA Intergenic Intergenic 6695 ENSMUSG00000104386.1 ENSMUSG00000104386 ENSMUST00000194254 Gm37030 processed_pseudogene Interval_121157 chr4 153619322 153619632 + 0 NA Intergenic Intergenic -137298 ENSMUSG00000039546.9 ENSMUSG00000039546 ENSMUST00000149177 Ajap1 protein_coding Interval_149650 chr7 100389103 100389336 + 0 NA intron (ENSMUSG00000047248.20, intron 4 of 17) protein_coding-intron (ENSMUSG00000047248.20, intron 3 of 32) 7625 ENSMUSG00000109046.1 ENSMUSG00000109046 ENSMUST00000208092 Gm44571 processed_pseudogene Interval_118421 chr4 131364195 131366641 + 0 NA Intergenic Intergenic -121779 ENSMUSG00000078531.3 ENSMUSG00000078531 ENSMUST00000149942 Gm831 lincRNA Interval_30482 chr11 94643685 94646095 + 0 NA TTS (ENSMUSG00000039055.4) protein_coding-TTS (ENSMUSG00000039055.4) 5816 ENSMUSG00000039055.4 ENSMUSG00000039055 ENSMUST00000128447 Eme1 protein_coding Interval_87888 chr19 56891042 56891893 + 0 NA intron (ENSMUSG00000025082.8, intron 4 of 13) protein_coding-intron (ENSMUSG00000025082.8, intron 4 of 13) 17218 ENSMUSG00000025082.8 ENSMUSG00000025082 ENSMUST00000026068 Vwa2 protein_coding Interval_168772 chr9 86830797 86831430 + 0 NA intron (ENSMUSG00000033419.16, intron 7 of 27) protein_coding-intron (ENSMUSG00000033419.16, intron 7 of 28) -44258 ENSMUSG00000103891.1 ENSMUSG00000103891 ENSMUST00000192170 Gm37941 TEC Interval_78570 chr18 14816438 14816805 + 0 NA intron (ENSMUSG00000054321.7, intron 7 of 14) protein_coding-intron (ENSMUSG00000054321.7, intron 7 of 14) -14047 ENSMUSG00000117530.1 ENSMUSG00000117530 ENSMUST00000234669 Gm21055 processed_pseudogene Interval_2575 chr1 40665071 40666203 + 0 NA Intergenic Intergenic -15960 ENSMUSG00000026062.12 ENSMUSG00000026062 ENSMUST00000192294 Slc9a2 protein_coding Interval_148735 chr7 84778972 84779999 + 0 NA TTS (ENSMUSG00000085236.3) antisense-TTS (ENSMUSG00000085236.3) -21549 ENSMUSG00000092429.1 ENSMUSG00000092429 ENSMUST00000174258 Gm18958 unprocessed_pseudogene Interval_63798 chr15 103502523 103504023 + 0 NA promoter-TSS (ENSMUSG00000022489.6) protein_coding-promoter-TSS (ENSMUSG00000022489.6) -11647 ENSMUSG00000022489.6 ENSMUSG00000022489 ENSMUST00000227925 Pde1b protein_coding Interval_21637 chr11 3369907 3371906 + 0 NA intron (ENSMUSG00000020451.17, intron 1 of 3) protein_coding-intron (ENSMUSG00000020451.17, intron 2 of 15) -15995 ENSMUSG00000087055.1 ENSMUSG00000087055 ENSMUST00000142322 Gm11948 sense_intronic Interval_140006 chr6 113364726 113365009 + 0 NA Intergenic Intergenic -9702 ENSMUSG00000108162.1 ENSMUSG00000108162 ENSMUST00000204099 Gm20589 processed_pseudogene Interval_15748 chr10 55929344 55929647 + 0 NA Intergenic Intergenic 172508 ENSMUSG00000112528.1 ENSMUSG00000112528 ENSMUST00000218919 Gm29794 processed_pseudogene Interval_18703 chr10 89453181 89455086 + 0 NA TTS (ENSMUSG00000047638.15) protein_coding-TTS (ENSMUSG00000047638.15) -20291 ENSMUSG00000074802.11 ENSMUSG00000074802 ENSMUST00000219073 Gas2l3 protein_coding Interval_17090 chr10 71302696 71302900 + 0 NA Intergenic Intergenic -7947 ENSMUSG00000093732.1 ENSMUSG00000093732 ENSMUST00000177104 Gm20609 lincRNA Interval_23118 chr11 20031347 20031895 + 0 NA Intergenic Intergenic 77051 ENSMUSG00000045671.17 ENSMUSG00000045671 ENSMUST00000123036 Spred2 protein_coding Interval_111241 chr4 15837056 15837734 + 0 NA Intergenic Intergenic -16025 ENSMUSG00000081026.1 ENSMUSG00000081026 ENSMUST00000121562 Gm11855 processed_pseudogene Interval_3481 chr1 58746572 58747355 + 0 NA intron (ENSMUSG00000026031.15, intron 8 of 9) protein_coding-intron (ENSMUSG00000026031.15, intron 8 of 9) 33077 ENSMUSG00000026031.15 ENSMUSG00000026031 ENSMUST00000123032 Cflar protein_coding Interval_30454 chr11 94483661 94483866 + 0 NA TTS (ENSMUSG00000020867.13) protein_coding-TTS (ENSMUSG00000020867.13) 649 ENSMUSG00000020867.13 ENSMUSG00000020867 ENSMUST00000125310 Spata20 protein_coding Interval_50667 chr14 17904441 17905025 + 0 NA intron (ENSMUSG00000021779.17, intron 2 of 9) protein_coding-intron (ENSMUSG00000021779.17, intron 2 of 9) -19600 ENSMUSG00000084722.1 ENSMUSG00000084722 ENSMUST00000122773 Gm24140 misc_RNA Interval_116627 chr4 116164673 116166432 + 0 NA promoter-TSS (ENSMUSG00000028699.9) protein_coding-promoter-TSS (ENSMUSG00000028699.9) -719 ENSMUSG00000028699.9 ENSMUSG00000028699 ENSMUST00000154534 Tspan1 protein_coding Interval_39017 chr12 84487476 84488073 + 0 NA intron (ENSMUSG00000085793.2, intron 4 of 4) protein_coding-intron (ENSMUSG00000085793.2, intron 5 of 5) -36826 ENSMUSG00000021238.11 ENSMUSG00000021238 ENSMUST00000222656 Aldh6a1 protein_coding Interval_77417 chr17 88565641 88566475 + 0 NA TTS (ENSMUSG00000034709.8) protein_coding-TTS (ENSMUSG00000034709.8) 3941 ENSMUSG00000034709.8 ENSMUSG00000034709 ENSMUST00000185400 Ppp1r21 protein_coding Interval_91509 chr2 40087000 40087301 + 0 NA Intergenic Intergenic 40710 ENSMUSG00000083240.3 ENSMUSG00000083240 ENSMUST00000118708 Gm13453 processed_pseudogene Interval_110948 chr4 10749238 10750993 + 0 NA intron (ENSMUSG00000086080.7, intron 3 of 5) lincRNA-intron (ENSMUSG00000086080.7, intron 2 of 2) 47696 ENSMUSG00000086080.7 ENSMUSG00000086080 ENSMUST00000141312 1700123O12Rik lincRNA Interval_135505 chr6 39724608 39725883 + 0 NA promoter-TSS (ENSMUSG00000002413.15) protein_coding-promoter-TSS (ENSMUSG00000002413.15) -60166 ENSMUSG00000002413.15 ENSMUSG00000002413 ENSMUST00000169647 Braf protein_coding Interval_128827 chr5 115484100 115484881 + 0 NA promoter-TSS (ENSMUSG00000029524.16) protein_coding-promoter-TSS (ENSMUSG00000029524.16) -4552 ENSMUSG00000029524.16 ENSMUSG00000029524 ENSMUST00000127479 Sirt4 protein_coding Interval_1123 chr1 15852308 15852739 + 0 NA promoter-TSS (ENSMUSG00000104379.1) TEC-promoter-TSS (ENSMUSG00000104379.1) -808 ENSMUSG00000104379.1 ENSMUSG00000104379 ENSMUST00000194867 Gm37509 TEC Interval_32551 chr11 108475143 108475811 + 0 NA intron (ENSMUSG00000020728.17, intron 6 of 24) protein_coding-intron (ENSMUSG00000020728.17, intron 7 of 27) 52204 ENSMUSG00000082544.1 ENSMUSG00000082544 ENSMUST00000119828 Gm11667 processed_pseudogene Interval_5695 chr1 90998293 90999794 + 0 NA intron (ENSMUSG00000026305.15, intron 1 of 12) protein_coding-intron (ENSMUSG00000026305.15, intron 1 of 12) -23783 ENSMUSG00000100791.1 ENSMUSG00000100791 ENSMUST00000187127 Gm28199 lincRNA Interval_101841 chr3 9879861 9880124 + 0 NA Intergenic Intergenic -19438 ENSMUSG00000102795.1 ENSMUSG00000102795 ENSMUST00000193785 Gm6236 processed_pseudogene Interval_120605 chr4 149650095 149651084 + 0 NA TTS (ENSMUSG00000039936.18) protein_coding-TTS (ENSMUSG00000039936.18) 4978 ENSMUSG00000098580.1 ENSMUSG00000098580 ENSMUST00000185093 Mir7023 miRNA Interval_166441 chr9 59507052 59508555 + 0 NA intron (ENSMUSG00000111852.1, intron 2 of 2) lincRNA-intron (ENSMUSG00000111852.1, intron 2 of 2) 5062 ENSMUSG00000111852.1 ENSMUSG00000111852 ENSMUST00000217109 Gm33180 lincRNA Interval_3274 chr1 55392896 55393184 + 0 NA Intergenic Intergenic -10953 ENSMUSG00000101085.1 ENSMUSG00000101085 ENSMUST00000188319 Gm8531 processed_pseudogene Interval_88985 chr2 14010408 14011146 + 0 NA intron (ENSMUSG00000063275.15, intron 6 of 7) protein_coding-intron (ENSMUSG00000063275.15, intron 6 of 7) 9272 ENSMUSG00000102553.1 ENSMUSG00000102553 ENSMUST00000191894 D930036K23Rik TEC Interval_37794 chr12 72011159 72012187 + 0 NA Intergenic Intergenic 37586 ENSMUSG00000114155.1 ENSMUSG00000114155 ENSMUST00000221336 Gm7986 processed_pseudogene Interval_158622 chr8 84822668 84824176 + 0 NA promoter-TSS (ENSMUSG00000053226.7) protein_coding-promoter-TSS (ENSMUSG00000053226.7) -8100 ENSMUSG00000033751.5 ENSMUSG00000033751 ENSMUST00000036734 Gadd45gip1 protein_coding Interval_97129 chr2 131498791 131501122 + 0 NA intron (ENSMUSG00000027333.18, intron 1 of 1) protein_coding-intron (ENSMUSG00000027333.18, intron 1 of 6) 8013 ENSMUSG00000027333.18 ENSMUSG00000027333 ENSMUST00000151143 Smox protein_coding Interval_97936 chr2 145903005 145903927 + 0 NA intron (ENSMUSG00000002728.14, intron 1 of 3) protein_coding-intron (ENSMUSG00000002728.14, intron 1 of 5) 209 ENSMUSG00000002728.14 ENSMUSG00000002728 ENSMUST00000129502 Naa20 protein_coding Interval_170243 chr9 106421529 106422378 + 0 NA Intergenic Intergenic -7609 ENSMUSG00000048758.14 ENSMUSG00000048758 ENSMUST00000214067 Rpl29 protein_coding Interval_165567 chr9 49542793 49543059 + 0 NA intron (ENSMUSG00000039542.16, intron 1 of 4) antisense-intron (ENSMUSG00000079564.3, intron 2 of 3) 24638 ENSMUSG00000079564.3 ENSMUSG00000079564 ENSMUST00000215070 Gm11149 antisense Interval_12234 chr1 191025252 191026932 + 0 NA promoter-TSS (ENSMUSG00000066595.9) protein_coding-promoter-TSS (ENSMUSG00000066595.9) 741 ENSMUSG00000097845.2 ENSMUSG00000097845 ENSMUST00000192407 A230020J21Rik antisense Interval_169774 chr9 101143025 101143255 + 0 NA intron (ENSMUSG00000043154.15, intron 9 of 11) protein_coding-intron (ENSMUSG00000043154.15, intron 9 of 12) -7172 ENSMUSG00000104061.1 ENSMUSG00000104061 ENSMUST00000195293 Gm37953 TEC Interval_113495 chr4 55356716 55357436 + 0 NA intron (ENSMUSG00000028426.10, intron 1 of 1) protein_coding-intron (ENSMUSG00000028426.10, intron 1 of 9) 6986 ENSMUSG00000028426.10 ENSMUSG00000028426 ENSMUST00000156263 Rad23b protein_coding Interval_119211 chr4 136228702 136228993 + 0 NA intron (ENSMUSG00000036995.7, intron 4 of 24) protein_coding-intron (ENSMUSG00000036995.7, intron 4 of 24) -19126 ENSMUSG00000001604.14 ENSMUSG00000001604 ENSMUST00000143942 Tcea3 protein_coding Interval_160645 chr8 111282202 111282528 + 0 NA intron (ENSMUSG00000033596.5, intron 8 of 8) protein_coding-intron (ENSMUSG00000033596.5, intron 8 of 12) 17826 ENSMUSG00000033596.5 ENSMUSG00000033596 ENSMUST00000212958 Rfwd3 protein_coding Interval_68422 chr16 76332203 76332928 + 0 NA intron (ENSMUSG00000048490.14, intron 2 of 3) protein_coding-intron (ENSMUSG00000048490.14, intron 2 of 3) 41261 ENSMUSG00000048490.14 ENSMUSG00000048490 ENSMUST00000145649 Nrip1 protein_coding Interval_1107 chr1 15770651 15771506 + 0 NA Intergenic Intergenic 10317 ENSMUSG00000100814.1 ENSMUSG00000100814 ENSMUST00000188400 Gm28669 processed_pseudogene Interval_164911 chr9 43036952 43037416 + 0 NA intron (ENSMUSG00000059495.14, intron 3 of 4) protein_coding-intron (ENSMUSG00000059495.14, intron 4 of 41) -10524 ENSMUSG00000059495.14 ENSMUSG00000059495 ENSMUST00000214175 Arhgef12 protein_coding Interval_81320 chr18 57963901 57964097 + 0 NA Intergenic Intergenic 36794 ENSMUSG00000024597.11 ENSMUSG00000024597 ENSMUST00000236673 Slc12a2 protein_coding Interval_28628 chr11 77414335 77414576 + 0 NA TTS (ENSMUSG00000037926.15) protein_coding-TTS (ENSMUSG00000037926.15) -48190 ENSMUSG00000020836.15 ENSMUSG00000020836 ENSMUST00000079770 Coro6 protein_coding Interval_8484 chr1 139982299 139982669 + 0 NA intron (ENSMUSG00000085867.1, intron 2 of 5) unprocessed_pseudogene-intron (ENSMUSG00000085867.1, intron 2 of 5) 11721 ENSMUSG00000085867.1 ENSMUSG00000085867 ENSMUST00000126680 Gm5834 unprocessed_pseudogene Interval_140360 chr6 117178296 117178682 + 0 NA exon (ENSMUSG00000061353.11, exon 4 of 4) protein_coding-exon (ENSMUSG00000061353.11, exon 4 of 4) 9912 ENSMUSG00000061353.11 ENSMUSG00000061353 ENSMUST00000073043 Cxcl12 protein_coding Interval_131666 chr5 139157192 139157826 + 0 NA intron (ENSMUSG00000025857.10, intron 4 of 12) protein_coding-intron (ENSMUSG00000025857.10, intron 4 of 12) -6816 ENSMUSG00000086873.1 ENSMUSG00000086873 ENSMUST00000151512 Gm15672 processed_transcript Interval_165955 chr9 54931463 54932062 + 0 NA TTS (ENSMUSG00000035878.13) protein_coding-TTS (ENSMUSG00000035878.13) 14415 ENSMUSG00000035878.13 ENSMUSG00000035878 ENSMUST00000135648 Hykk protein_coding Interval_4884 chr1 81419597 81420741 + 0 NA Intergenic Intergenic 102172 ENSMUSG00000104029.1 ENSMUSG00000104029 ENSMUST00000192484 Gm37210 TEC Interval_99470 chr2 161845942 161846508 + 0 NA intron (ENSMUSG00000053141.16, intron 9 of 29) protein_coding-intron (ENSMUSG00000053141.16, intron 9 of 30) -46070 ENSMUSG00000053141.16 ENSMUSG00000053141 ENSMUST00000129015 Ptprt protein_coding Interval_135061 chr6 35062690 35063069 + 0 NA intron (ENSMUSG00000038784.13, intron 2 of 3) protein_coding-intron (ENSMUSG00000038784.13, intron 7 of 10) 70808 ENSMUSG00000038784.13 ENSMUSG00000038784 ENSMUST00000202666 Cnot4 protein_coding Interval_130119 chr5 124393257 124393651 + 0 NA intron (ENSMUSG00000038095.15, intron 16 of 16) protein_coding-intron (ENSMUSG00000038095.15, intron 17 of 31) 12275 ENSMUSG00000038095.15 ENSMUSG00000038095 ENSMUST00000197974 Sbno1 protein_coding Interval_4431 chr1 74106120 74106537 + 0 NA intron (ENSMUSG00000055322.16, intron 1 of 33) protein_coding-intron (ENSMUSG00000055322.16, intron 1 of 34) -7652 ENSMUSG00000055322.16 ENSMUSG00000055322 ENSMUST00000190599 Tns1 protein_coding Interval_83197 chr18 82717965 82718904 + 0 NA intron (ENSMUSG00000117888.1, intron 2 of 2) lincRNA-intron (ENSMUSG00000117888.1, intron 2 of 2) 431 ENSMUSG00000117888.1 ENSMUSG00000117888 ENSMUST00000238161 Gm50351 lincRNA Interval_54725 chr14 73599871 73600339 + 0 NA Intergenic Intergenic 47473 ENSMUSG00000022110.13 ENSMUSG00000022110 ENSMUST00000159165 Sucla2 protein_coding Interval_174243 chrX 140598397 140601175 + 0 NA intron (ENSMUSG00000031431.13, intron 1 of 3) protein_coding-intron (ENSMUSG00000031431.13, intron 1 of 3) -16187 ENSMUSG00000118524.1 ENSMUSG00000118524 ENSMUST00000239013 AL683809.1 processed_pseudogene Interval_171598 chr9 119455693 119457813 + 0 NA intron (ENSMUSG00000042787.15, intron 3 of 3) protein_coding-intron (ENSMUSG00000042787.15, intron 5 of 5) 11777 ENSMUSG00000042787.15 ENSMUSG00000042787 ENSMUST00000214462 Exog protein_coding Interval_56319 chr14 117267712 117268534 + 0 NA intron (ENSMUSG00000058571.11, intron 2 of 9) protein_coding-intron (ENSMUSG00000058571.11, intron 2 of 8) 342592 ENSMUSG00000058571.11 ENSMUSG00000058571 ENSMUST00000078849 Gpc6 protein_coding Interval_32662 chr11 109483460 109484077 + 0 NA intron (ENSMUSG00000020604.13, intron 1 of 3) protein_coding-intron (ENSMUSG00000020604.13, intron 1 of 13) 10394 ENSMUSG00000020604.13 ENSMUSG00000020604 ENSMUST00000106696 Arsg protein_coding Interval_59391 chr15 52065281 52065640 + 0 NA Intergenic Intergenic -23848 ENSMUSG00000115457.1 ENSMUSG00000115457 ENSMUST00000227885 Gm2387 processed_pseudogene Interval_163436 chr9 21432074 21433465 + 0 NA intron (ENSMUSG00000033335.17, intron 1 of 2) protein_coding-intron (ENSMUSG00000033335.17, intron 1 of 20) 7801 ENSMUSG00000033335.17 ENSMUSG00000033335 ENSMUST00000174243 Dnm2 protein_coding Interval_62779 chr15 96834221 96835148 + 0 NA Intergenic Intergenic -67606 ENSMUSG00000095638.2 ENSMUSG00000095638 ENSMUST00000177677 Gm8888 processed_pseudogene Interval_151990 chr7 127991605 127992239 + 0 NA exon (ENSMUSG00000030793.4, exon 3 of 3) protein_coding-exon (ENSMUSG00000030793.4, exon 3 of 3) -1347 ENSMUSG00000108353.1 ENSMUSG00000108353 ENSMUST00000205745 Gm45205 TEC Interval_51384 chr14 27141002 27142073 + 0 NA intron (ENSMUSG00000021895.10, intron 1 of 13) protein_coding-intron (ENSMUSG00000021895.10, intron 1 of 13) 26638 ENSMUSG00000021895.10 ENSMUSG00000021895 ENSMUST00000225494 Arhgef3 protein_coding Interval_35625 chr12 26067805 26068859 + 0 NA Intergenic Intergenic -81984 ENSMUSG00000113611.1 ENSMUSG00000113611 ENSMUST00000220612 Gm47750 processed_pseudogene Interval_164290 chr9 35041371 35041955 + 0 NA Intergenic Intergenic 30968 ENSMUSG00000032038.7 ENSMUSG00000032038 ENSMUST00000215463 St3gal4 protein_coding Interval_105553 chr3 87659457 87660310 + 0 NA intron (ENSMUSG00000041977.18, intron 1 of 38) protein_coding-intron (ENSMUSG00000041977.18, intron 1 of 39) 41122 ENSMUSG00000041977.18 ENSMUSG00000041977 ENSMUST00000212015 Arhgef11 protein_coding Interval_40671 chr12 106808842 106809732 + 0 NA Intergenic Intergenic -28695 ENSMUSG00000085801.1 ENSMUSG00000085801 ENSMUST00000156376 1700013N06Rik lincRNA Interval_60848 chr15 77132264 77132766 + 0 NA intron (ENSMUSG00000033565.18, intron 2 of 3) protein_coding-intron (ENSMUSG00000033565.18, intron 3 of 12) -16713 ENSMUSG00000116298.1 ENSMUSG00000116298 ENSMUST00000230697 4833412C15Rik TEC Interval_56276 chr14 115830617 115832339 + 0 NA intron (ENSMUSG00000093497.1, intron 2 of 3) protein_coding-intron (ENSMUSG00000022112.14, intron 7 of 7) 39800 ENSMUSG00000093497.1 ENSMUSG00000093497 ENSMUST00000176344 Gm20713 processed_transcript Interval_78149 chr18 9367763 9368292 + 0 NA intron (ENSMUSG00000024286.8, intron 2 of 8) protein_coding-intron (ENSMUSG00000024286.8, intron 3 of 9) 63392 ENSMUSG00000117644.1 ENSMUSG00000117644 ENSMUST00000234891 Gm50053 processed_pseudogene Interval_70351 chr17 8895896 8896123 + 0 NA intron (ENSMUSG00000023868.17, intron 1 of 4) protein_coding-intron (ENSMUSG00000023868.17, intron 1 of 21) -92333 ENSMUSG00000023873.13 ENSMUSG00000023873 ENSMUST00000136954 1700010I14Rik protein_coding Interval_32364 chr11 107164824 107165061 + 0 NA intron (ENSMUSG00000087596.1, intron 1 of 2) antisense-intron (ENSMUSG00000087596.1, intron 1 of 2) 7290 ENSMUSG00000081103.1 ENSMUSG00000081103 ENSMUST00000117751 Rps12-ps26 processed_pseudogene Interval_124785 chr5 53998021 53999496 + 0 NA exon (ENSMUSG00000039156.19, exon 1 of 12) protein_coding-exon (ENSMUSG00000039156.19, exon 1 of 12) 80314 ENSMUSG00000107173.1 ENSMUSG00000107173 ENSMUST00000201049 Gm43266 TEC Interval_45393 chr13 54839278 54839512 + 0 NA Intergenic Intergenic 1509 ENSMUSG00000086097.1 ENSMUSG00000086097 ENSMUST00000148974 Gm16250 processed_pseudogene Interval_2954 chr1 51600552 51600974 + 0 NA Intergenic Intergenic -71394 ENSMUSG00000103424.1 ENSMUSG00000103424 ENSMUST00000194442 Gm37535 TEC Interval_144464 chr7 25303619 25303879 + 0 NA exon (ENSMUSG00000058741.4, exon 3 of 3) protein_coding-exon (ENSMUSG00000058741.4, exon 3 of 3) 2338 ENSMUSG00000058741.4 ENSMUSG00000058741 ENSMUST00000080288 Prr19 protein_coding Interval_159086 chr8 90154335 90154657 + 0 NA Intergenic Intergenic 193635 ENSMUSG00000043668.13 ENSMUSG00000043668 ENSMUST00000176034 Tox3 protein_coding Interval_31733 chr11 102522871 102523268 + 0 NA intron (ENSMUSG00000034621.14, intron 4 of 5) protein_coding-intron (ENSMUSG00000034621.14, intron 4 of 5) -22633 ENSMUSG00000081677.1 ENSMUSG00000081677 ENSMUST00000119782 Mdk-ps1 processed_pseudogene Interval_171779 chr9 121002110 121003423 + 0 NA intron (ENSMUSG00000040936.15, intron 1 of 2) protein_coding-intron (ENSMUSG00000040936.15, intron 1 of 2) -42259 ENSMUSG00000040936.15 ENSMUSG00000040936 ENSMUST00000164969 Ulk4 protein_coding Interval_131533 chr5 137778626 137779988 + 0 NA promoter-TSS (ENSMUSG00000029725.10) protein_coding-promoter-TSS (ENSMUSG00000029725.10) -130 ENSMUSG00000029725.10 ENSMUSG00000029725 ENSMUST00000152298 Ppp1r35 protein_coding Interval_10040 chr1 165291182 165292902 + 0 NA Intergenic Intergenic -3747 ENSMUSG00000040836.15 ENSMUSG00000040836 ENSMUST00000111450 Gpr161 protein_coding Interval_142586 chr6 143594101 143594311 + 0 NA intron (ENSMUSG00000086887.1, intron 4 of 4) lincRNA-intron (ENSMUSG00000086887.1, intron 4 of 4) 57082 ENSMUSG00000086887.1 ENSMUSG00000086887 ENSMUST00000150559 1700060C16Rik lincRNA Interval_129645 chr5 121514349 121514663 + 0 NA intron (ENSMUSG00000029452.18, intron 11 of 11) protein_coding-intron (ENSMUSG00000029452.18, intron 11 of 11) 10993 ENSMUSG00000104999.1 ENSMUSG00000104999 ENSMUST00000196484 4930477O15Rik TEC Interval_79302 chr18 30278624 30278845 + 0 NA intron (ENSMUSG00000033628.15, intron 3 of 24) protein_coding-intron (ENSMUSG00000033628.15, intron 3 of 23) 5807 ENSMUSG00000033628.15 ENSMUSG00000033628 ENSMUST00000131405 Pik3c3 protein_coding Interval_147970 chr7 75965434 75965740 + 0 NA Intergenic Intergenic -35237 ENSMUSG00000108495.1 ENSMUSG00000108495 ENSMUST00000206543 Gm45139 TEC Interval_110633 chr4 5511651 5511976 + 0 NA Intergenic Intergenic 39410 ENSMUSG00000087099.1 ENSMUSG00000087099 ENSMUST00000131675 Gm11782 lincRNA Interval_45006 chr13 51390060 51390485 + 0 NA intron (ENSMUSG00000112959.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000112959.1, intron 1 of 1) -18367 ENSMUSG00000067586.4 ENSMUSG00000067586 ENSMUST00000087978 S1pr3 protein_coding Interval_125238 chr5 65588636 65589815 + 0 NA intron (ENSMUSG00000107102.1, intron 1 of 1) protein_coding-intron (ENSMUSG00000029203.16, intron 4 of 6) 2215 ENSMUSG00000107102.1 ENSMUSG00000107102 ENSMUST00000202274 Gm42726 antisense Interval_170427 chr9 107900945 107901945 + 0 NA exon (ENSMUSG00000032583.7, exon 4 of 6) protein_coding-exon (ENSMUSG00000032583.7, exon 4 of 6) -3783 ENSMUSG00000089005.1 ENSMUSG00000089005 ENSMUST00000158380 Gm23856 snRNA Interval_55040 chr14 77394592 77394879 + 0 NA intron (ENSMUSG00000022012.9, intron 3 of 6) protein_coding-intron (ENSMUSG00000022012.9, intron 4 of 18) 46241 ENSMUSG00000115244.1 ENSMUSG00000115244 ENSMUST00000226498 Gm49002 antisense Interval_18245 chr10 84238300 84239239 + 0 NA Intergenic Intergenic -16712 ENSMUSG00000111062.1 ENSMUSG00000111062 ENSMUST00000216890 Gm47253 lincRNA Interval_94782 chr2 94268215 94268715 + 0 NA Intergenic Intergenic -3857 ENSMUSG00000075020.6 ENSMUSG00000075020 ENSMUST00000134563 Mir670hg lincRNA Interval_44273 chr13 43253447 43253965 + 0 NA intron (ENSMUSG00000051335.6, intron 1 of 1) protein_coding-intron (ENSMUSG00000051335.6, intron 1 of 1) 49699 ENSMUSG00000051335.6 ENSMUSG00000051335 ENSMUST00000222779 Gfod1 protein_coding Interval_159087 chr8 90166691 90167883 + 0 NA Intergenic Intergenic 180844 ENSMUSG00000043668.13 ENSMUSG00000043668 ENSMUST00000176034 Tox3 protein_coding Interval_90017 chr2 27352563 27353168 + 0 NA intron (ENSMUSG00000009621.18, intron 1 of 29) protein_coding-intron (ENSMUSG00000009621.18, intron 2 of 27) 26161 ENSMUSG00000086669.1 ENSMUSG00000086669 ENSMUST00000156020 AA645442 antisense Interval_55037 chr14 77372026 77372411 + 0 NA intron (ENSMUSG00000022012.9, intron 2 of 6) protein_coding-intron (ENSMUSG00000022012.9, intron 3 of 18) -28032 ENSMUSG00000115733.1 ENSMUSG00000115733 ENSMUST00000227726 Gm49001 transcribed_processed_pseudogene Interval_65958 chr16 30530953 30532266 + 0 NA intron (ENSMUSG00000022537.18, intron 3 of 6) protein_coding-intron (ENSMUSG00000022537.18, intron 9 of 11) 11888 ENSMUSG00000022537.18 ENSMUSG00000022537 ENSMUST00000153380 Tmem44 protein_coding Interval_164611 chr9 40020894 40021555 + 0 NA promoter-TSS (ENSMUSG00000046678.6) protein_coding-promoter-TSS (ENSMUSG00000046678.6) -240 ENSMUSG00000046678.6 ENSMUSG00000046678 ENSMUST00000059859 Olfr981 protein_coding Interval_24293 chr11 32151741 32152072 + 0 NA Intergenic Intergenic -33099 ENSMUSG00000081613.1 ENSMUSG00000081613 ENSMUST00000121140 Gm12109 processed_pseudogene Interval_4825 chr1 79824452 79824726 + 0 NA intron (ENSMUSG00000026249.10, intron 1 of 4) protein_coding-intron (ENSMUSG00000026249.10, intron 1 of 8) -4285 ENSMUSG00000026249.10 ENSMUSG00000026249 ENSMUST00000191026 Serpine2 protein_coding Interval_12817 chr10 5812038 5812285 + 0 NA exon (ENSMUSG00000019774.8, exon 7 of 7) protein_coding-exon (ENSMUSG00000019774.8, exon 7 of 7) 3594 ENSMUSG00000019774.8 ENSMUSG00000019774 ENSMUST00000145687 Mtrf1l protein_coding Interval_138037 chr6 84500078 84501153 + 0 NA Intergenic Intergenic -35261 ENSMUSG00000107926.1 ENSMUSG00000107926 ENSMUST00000204799 4930504D19Rik lincRNA Interval_15413 chr10 45686283 45686771 + 0 NA intron (ENSMUSG00000038822.15, intron 6 of 9) protein_coding-intron (ENSMUSG00000038822.15, intron 19 of 23) 5541 ENSMUSG00000111036.1 ENSMUSG00000111036 ENSMUST00000216742 Gm47502 transcribed_processed_pseudogene Interval_109572 chr3 144556752 144557364 + 0 NA exon (ENSMUSG00000040151.9, exon 2 of 4) protein_coding-exon (ENSMUSG00000040151.9, exon 2 of 4) 13100 ENSMUSG00000040151.9 ENSMUSG00000040151 ENSMUST00000199680 Hs2st1 protein_coding Interval_164457 chr9 37161577 37161911 + 0 NA Intergenic Intergenic 11250 ENSMUSG00000077483.1 ENSMUSG00000077483 ENSMUST00000104295 Gm25273 snoRNA Interval_119310 chr4 136786519 136787131 + 0 NA intron (ENSMUSG00000028664.14, intron 1 of 2) protein_coding-intron (ENSMUSG00000028664.14, intron 1 of 15) -92785 ENSMUSG00000028664.14 ENSMUSG00000028664 ENSMUST00000144573 Ephb2 protein_coding Interval_169598 chr9 99381056 99381299 + 0 NA Intergenic Intergenic 13518 ENSMUSG00000032470.17 ENSMUSG00000032470 ENSMUST00000123771 Mras protein_coding Interval_156634 chr8 56064937 56065391 + 0 NA intron (ENSMUSG00000038257.10, intron 5 of 9) protein_coding-intron (ENSMUSG00000038257.10, intron 5 of 9) -48064 ENSMUSG00000109662.1 ENSMUSG00000109662 ENSMUST00000209828 Gm45366 processed_pseudogene Interval_172985 chrX 60052732 60053641 + 0 NA Intergenic Intergenic 2185 ENSMUSG00000081341.1 ENSMUSG00000081341 ENSMUST00000117378 Gm14891 processed_pseudogene Interval_315 chr1 3560012 3560667 + 0 NA intron (ENSMUSG00000051951.5, intron 1 of 2) protein_coding-intron (ENSMUSG00000051951.5, intron 1 of 2) 28544 ENSMUSG00000103147.1 ENSMUSG00000103147 ENSMUST00000192183 Gm7341 processed_pseudogene Interval_127270 chr5 102022901 102024634 + 0 NA intron (ENSMUSG00000043940.15, intron 2 of 15) protein_coding-intron (ENSMUSG00000043940.15, intron 2 of 66) 34302 ENSMUSG00000105761.1 ENSMUSG00000105761 ENSMUST00000197792 Gm43787 TEC Interval_34750 chr12 9426305 9427368 + 0 NA intron (ENSMUSG00000113913.1, intron 2 of 3) lincRNA-intron (ENSMUSG00000113913.1, intron 2 of 3) -2711 ENSMUSG00000060647.2 ENSMUSG00000060647 ENSMUST00000080066 Gm7099 processed_pseudogene Interval_75126 chr17 63717713 63717928 + 0 NA Intergenic Intergenic -15330 ENSMUSG00000117014.1 ENSMUSG00000117014 ENSMUST00000233403 Gm9300 processed_pseudogene Interval_32638 chr11 109351520 109352187 + 0 NA TTS (ENSMUSG00000056687.9) antisense-TTS (ENSMUSG00000056687.9) 5014 ENSMUSG00000099630.1 ENSMUSG00000099630 ENSMUST00000190043 1700096J18Rik lincRNA Interval_39317 chr12 86673359 86673672 + 0 NA Intergenic Intergenic -5185 ENSMUSG00000021256.5 ENSMUSG00000021256 ENSMUST00000021681 Vash1 protein_coding Interval_62078 chr15 86243658 86243994 + 0 NA intron (ENSMUSG00000051864.10, intron 4 of 12) protein_coding-intron (ENSMUSG00000051864.10, intron 4 of 12) 8321 ENSMUSG00000051864.10 ENSMUSG00000051864 ENSMUST00000229242 Tbc1d22a protein_coding Interval_76750 chr17 83818239 83819347 + 0 NA intron (ENSMUSG00000055817.18, intron 16 of 16) protein_coding-intron (ENSMUSG00000055817.18, intron 5 of 5) 27996 ENSMUSG00000000673.9 ENSMUSG00000000673 ENSMUST00000234312 Haao protein_coding Interval_93284 chr2 71675183 71675396 + 0 NA Intergenic Intergenic -44128 ENSMUSG00000064263.6 ENSMUSG00000064263 ENSMUST00000079720 Platr26 lincRNA Interval_71384 chr17 22883529 22884695 + 0 NA Intergenic Intergenic 10626 ENSMUSG00000117002.1 ENSMUSG00000117002 ENSMUST00000233007 Gm32892 processed_pseudogene Interval_119961 chr4 141129379 141129693 + 0 NA intron (ENSMUSG00000040842.17, intron 1 of 3) protein_coding-intron (ENSMUSG00000040842.17, intron 1 of 2) 10191 ENSMUSG00000040842.17 ENSMUSG00000040842 ENSMUST00000128444 Szrd1 protein_coding Interval_39295 chr12 86507710 86508863 + 0 NA intron (ENSMUSG00000021255.17, intron 4 of 5) protein_coding-intron (ENSMUSG00000021255.17, intron 5 of 6) 38169 ENSMUSG00000021255.17 ENSMUSG00000021255 ENSMUST00000136464 Esrrb protein_coding Interval_74910 chr17 57232789 57233105 + 0 NA Intergenic Intergenic -10120 ENSMUSG00000024164.15 ENSMUSG00000024164 ENSMUST00000176457 C3 protein_coding Interval_52604 chr14 47825350 47826136 + 0 NA Intergenic Intergenic -20424 ENSMUSG00000115215.1 ENSMUSG00000115215 ENSMUST00000226360 Gm41148 lincRNA Interval_61670 chr15 83298487 83299390 + 0 NA TTS (ENSMUSG00000054277.8) protein_coding-TTS (ENSMUSG00000054277.8) 34329 ENSMUSG00000054277.8 ENSMUSG00000054277 ENSMUST00000227511 Arfgap3 protein_coding Interval_101195 chr2 179333903 179334134 + 0 NA Intergenic Intergenic -30275 ENSMUSG00000081882.1 ENSMUSG00000081882 ENSMUST00000119749 Gm14294 processed_pseudogene Interval_15327 chr10 44515839 44516232 + 0 NA intron (ENSMUSG00000038151.13, intron 1 of 3) protein_coding-intron (ENSMUSG00000038151.13, intron 1 of 3) -58825 ENSMUSG00000038151.13 ENSMUSG00000038151 ENSMUST00000167340 Prdm1 protein_coding Interval_1893 chr1 34379350 34379570 + 0 NA Intergenic Intergenic 12089 ENSMUSG00000101206.1 ENSMUSG00000101206 ENSMUST00000187302 Gm5266 processed_pseudogene Interval_128140 chr5 111254588 111255602 + 0 NA intron (ENSMUSG00000033209.17, intron 12 of 22) protein_coding-intron (ENSMUSG00000033209.17, intron 13 of 23) 19999 ENSMUSG00000099130.1 ENSMUSG00000099130 ENSMUST00000183861 Gm27602 misc_RNA Interval_80312 chr18 39095304 39095678 + 0 NA intron (ENSMUSG00000036452.18, intron 1 of 22) protein_coding-intron (ENSMUSG00000036452.18, intron 1 of 22) -101299 ENSMUSG00000086991.1 ENSMUSG00000086991 ENSMUST00000131421 Gm15334 antisense Interval_69991 chr17 4092466 4093419 + 0 NA Intergenic Intergenic -9947 ENSMUSG00000116975.1 ENSMUSG00000116975 ENSMUST00000231647 4930470H14Rik lincRNA Interval_78893 chr18 21213920 21214631 + 0 NA intron (ENSMUSG00000042680.8, intron 2 of 4) protein_coding-intron (ENSMUSG00000042680.8, intron 2 of 5) 85848 ENSMUSG00000042680.8 ENSMUSG00000042680 ENSMUST00000234115 Garem1 protein_coding Interval_145 GL456387.1 16414 16621 + 0 NA NA NA NA NA Interval_155796 chr8 38347155 38348069 + 0 NA intron (ENSMUSG00000039539.13, intron 1 of 9) protein_coding-intron (ENSMUSG00000039539.13, intron 1 of 7) -95410 ENSMUSG00000065457.3 ENSMUSG00000065457 ENSMUST00000083523 Mir383 miRNA Interval_94011 chr2 80688183 80689217 + 0 NA Intergenic Intergenic -18889 ENSMUSG00000077404.1 ENSMUSG00000077404 ENSMUST00000104216 Gm25420 snoRNA Interval_169024 chr9 90410404 90410837 + 0 NA Intergenic Intergenic 58625 ENSMUSG00000065881.1 ENSMUSG00000065881 ENSMUST00000083947 Gm22866 snRNA Interval_150466 chr7 110914084 110915349 + 0 NA intron (ENSMUSG00000005611.15, intron 5 of 15) protein_coding-intron (ENSMUSG00000005611.15, intron 10 of 20) 9731 ENSMUSG00000087160.1 ENSMUSG00000087160 ENSMUST00000126011 Gm16336 antisense Interval_136407 chr6 54179535 54180104 + 0 NA intron (ENSMUSG00000004633.17, intron 2 of 5) protein_coding-intron (ENSMUSG00000004633.17, intron 2 of 12) -2136 ENSMUSG00000080205.2 ENSMUSG00000080205 ENSMUST00000112504 Gm15526 processed_pseudogene Interval_171223 chr9 115325869 115326771 + 0 NA Intergenic Intergenic -15899 ENSMUSG00000032437.10 ENSMUSG00000032437 ENSMUST00000035010 Stt3b protein_coding Interval_115799 chr4 104592889 104593084 + 0 NA intron (ENSMUSG00000028519.16, intron 1 of 3) protein_coding-intron (ENSMUSG00000028519.16, intron 1 of 5) -12310 ENSMUSG00000028519.16 ENSMUSG00000028519 ENSMUST00000149672 Dab1 protein_coding Interval_39010 chr12 84436076 84437089 + 0 NA TTS (ENSMUSG00000021238.11) protein_coding-TTS (ENSMUSG00000021238.11) 6363 ENSMUSG00000057265.13 ENSMUSG00000057265 ENSMUST00000221969 Bbof1 protein_coding Interval_37149 chr12 58980747 58982145 + 0 NA intron (ENSMUSG00000020986.13, intron 11 of 17) protein_coding-intron (ENSMUSG00000020986.13, intron 13 of 19) 1258 ENSMUSG00000020986.13 ENSMUSG00000020986 ENSMUST00000134223 Sec23a protein_coding Interval_86120 chr19 36868113 36869354 + 0 NA intron (ENSMUSG00000024811.11, intron 4 of 5) protein_coding-intron (ENSMUSG00000024811.11, intron 13 of 26) 19362 ENSMUSG00000024811.11 ENSMUSG00000024811 ENSMUST00000168654 Tnks2 protein_coding Interval_164859 chr9 42520493 42521257 + 0 NA promoter-TSS (ENSMUSG00000093745.1) misc_RNA-promoter-TSS (ENSMUSG00000093745.1) -44 ENSMUSG00000093745.1 ENSMUSG00000093745 ENSMUST00000176676 Gm24420 misc_RNA Interval_115374 chr4 98321392 98322880 + 0 NA intron (ENSMUSG00000046683.16, intron 1 of 2) antisense-intron (ENSMUSG00000046683.16, intron 1 of 1) 688 ENSMUSG00000046683.16 ENSMUSG00000046683 ENSMUST00000180374 0610025J13Rik antisense Interval_116105 chr4 107703949 107704451 + 0 NA intron (ENSMUSG00000085549.7, intron 1 of 2) lincRNA-intron (ENSMUSG00000085549.7, intron 1 of 3) -6246 ENSMUSG00000094267.1 ENSMUSG00000094267 ENSMUST00000179154 Gm25123 miRNA Interval_13305 chr10 14403822 14404480 + 0 NA TTS (ENSMUSG00000039116.7) protein_coding-TTS (ENSMUSG00000039116.7) 76740 ENSMUSG00000112225.1 ENSMUSG00000112225 ENSMUST00000218527 Gm48854 lincRNA Interval_133553 chr6 6577954 6579013 + 0 NA exon (ENSMUSG00000042541.10, exon 1 of 3) protein_coding-exon (ENSMUSG00000042541.10, exon 1 of 3) 180 ENSMUSG00000042541.10 ENSMUSG00000042541 ENSMUST00000205180 Sem1 protein_coding Interval_50104 chr14 8002425 8004353 + 0 NA intron (ENSMUSG00000025277.14, intron 1 of 8) protein_coding-intron (ENSMUSG00000025277.14, intron 1 of 8) 470 ENSMUSG00000025277.14 ENSMUSG00000025277 ENSMUST00000026313 Abhd6 protein_coding Interval_169300 chr9 96242860 96244320 + 0 NA intron (ENSMUSG00000032411.15, intron 4 of 13) protein_coding-intron (ENSMUSG00000032411.15, intron 3 of 12) 24460 ENSMUSG00000103611.1 ENSMUSG00000103611 ENSMUST00000192006 Gm37195 TEC Interval_124540 chr5 50190755 50191020 + 0 NA Intergenic Intergenic -26360 ENSMUSG00000105020.1 ENSMUSG00000105020 ENSMUST00000196032 Gm7205 unprocessed_pseudogene Interval_13995 chr10 25369436 25369915 + 0 NA intron (ENSMUSG00000019978.16, intron 1 of 17) protein_coding-intron (ENSMUSG00000019978.16, intron 1 of 19) 46510 ENSMUSG00000112445.1 ENSMUSG00000112445 ENSMUST00000219193 Gm47830 processed_pseudogene Interval_11464 chr1 182029796 182031662 + 0 NA Intergenic Intergenic -23043 ENSMUSG00000102760.1 ENSMUSG00000102760 ENSMUST00000191734 Gm37258 TEC Interval_118522 chr4 132256212 132256568 + 0 NA intron (ENSMUSG00000028901.13, intron 1 of 10) protein_coding-intron (ENSMUSG00000028901.13, intron 1 of 9) -3896 ENSMUSG00000028901.13 ENSMUSG00000028901 ENSMUST00000126542 Gmeb1 protein_coding Interval_22399 chr11 9557297 9558083 + 0 NA intron (ENSMUSG00000004668.14, intron 48 of 61) protein_coding-intron (ENSMUSG00000004668.14, intron 48 of 61) 147933 ENSMUSG00000104137.1 ENSMUSG00000104137 ENSMUST00000195362 Gm36954 TEC Interval_140772 chr6 121193648 121194750 + 0 NA exon (ENSMUSG00000067825.11, exon 5 of 5) protein_coding-exon (ENSMUSG00000067825.11, exon 5 of 5) 3984 ENSMUSG00000107915.1 ENSMUSG00000107915 ENSMUST00000205150 Gm44014 TEC Interval_147955 chr7 75864137 75865571 + 0 NA intron (ENSMUSG00000055652.14, intron 1 of 1) protein_coding-intron (ENSMUSG00000055652.14, intron 1 of 2) 16457 ENSMUSG00000055652.14 ENSMUSG00000055652 ENSMUST00000205887 Klhl25 protein_coding Interval_100023 chr2 166583014 166584013 + 0 NA intron (ENSMUSG00000039621.13, intron 23 of 37) protein_coding-intron (ENSMUSG00000039621.13, intron 25 of 39) 71629 ENSMUSG00000093063.1 ENSMUSG00000093063 ENSMUST00000175322 Gm23152 rRNA Interval_13789 chr10 22184846 22185094 + 0 NA intron (ENSMUSG00000053219.15, intron 5 of 5) protein_coding-intron (ENSMUSG00000075297.10, intron 1 of 5) 26401 ENSMUSG00000053219.15 ENSMUSG00000053219 ENSMUST00000178026 Raet1e protein_coding Interval_20358 chr10 117094083 117094357 + 0 NA intron (ENSMUSG00000020170.4, intron 4 of 5) protein_coding-intron (ENSMUSG00000020170.4, intron 4 of 9) -39319 ENSMUSG00000034024.8 ENSMUSG00000034024 ENSMUST00000218059 Cct2 protein_coding Interval_129160 chr5 117918693 117919939 + 0 NA exon (ENSMUSG00000029361.18, exon 1 of 3) protein_coding-exon (ENSMUSG00000029361.18, exon 1 of 3) 20202 ENSMUSG00000098072.1 ENSMUSG00000098072 ENSMUST00000182216 Gm26995 antisense Interval_40450 chr12 104952197 104953052 + 0 NA intron (ENSMUSG00000054150.12, intron 11 of 17) protein_coding-intron (ENSMUSG00000054150.12, intron 10 of 16) -25935 ENSMUSG00000100975.2 ENSMUSG00000100975 ENSMUST00000185486 Gm28875 lincRNA Interval_170855 chr9 111245710 111246117 + 0 NA intron (ENSMUSG00000032498.9, intron 4 of 4) protein_coding-intron (ENSMUSG00000032498.9, intron 11 of 18) -1046 ENSMUSG00000089082.1 ENSMUSG00000089082 ENSMUST00000158457 Gm24860 misc_RNA Interval_3527 chr1 59361193 59361944 + 0 NA Intergenic Intergenic -17362 ENSMUSG00000099922.1 ENSMUSG00000099922 ENSMUST00000187523 Gm29016 lincRNA Interval_93641 chr2 75474929 75475099 + 0 NA Intergenic Intergenic -10226 ENSMUSG00000086576.1 ENSMUSG00000086576 ENSMUST00000142828 Gm13660 lincRNA Interval_141291 chr6 126947138 126947360 + 0 NA exon (ENSMUSG00000030347.6, exon 4 of 4) protein_coding-exon (ENSMUSG00000030347.6, exon 4 of 4) -3091 ENSMUSG00000030347.6 ENSMUSG00000030347 ENSMUST00000201520 D6Wsu163e protein_coding Interval_50332 chr14 11883417 11884255 + 0 NA intron (ENSMUSG00000021745.14, intron 2 of 3) protein_coding-intron (ENSMUSG00000021745.14, intron 2 of 29) 16242 ENSMUSG00000114431.1 ENSMUSG00000114431 ENSMUST00000224051 Gm48601 TEC Interval_77840 chr18 4374984 4376224 + 0 NA promoter-TSS (ENSMUSG00000024234.7) protein_coding-promoter-TSS (ENSMUSG00000024234.7) 1 ENSMUSG00000024234.7 ENSMUSG00000024234 ENSMUST00000234924 Mtpap protein_coding Interval_64600 chr16 13603201 13603852 + 0 NA intron (ENSMUSG00000022685.9, intron 21 of 23) protein_coding-intron (ENSMUSG00000022685.9, intron 20 of 23) 64612 ENSMUSG00000022685.9 ENSMUSG00000022685 ENSMUST00000229251 Parn protein_coding Interval_121787 chr5 8227694 8227973 + 0 NA intron (ENSMUSG00000040537.17, intron 4 of 4) protein_coding-intron (ENSMUSG00000040537.17, intron 4 of 28) -14890 ENSMUSG00000088103.1 ENSMUSG00000088103 ENSMUST00000157478 Gm23993 snoRNA Interval_139800 chr6 108813067 108813269 + 0 NA intron (ENSMUSG00000030105.8, intron 1 of 6) protein_coding-intron (ENSMUSG00000030105.8, intron 1 of 6) -15473 ENSMUSG00000030104.9 ENSMUSG00000030104 ENSMUST00000203302 Edem1 protein_coding Interval_120052 chr4 141545067 141547172 + 0 NA promoter-TSS (ENSMUSG00000048406.5) pseudogene-promoter-TSS (ENSMUSG00000048406.5) -70 ENSMUSG00000048406.5 ENSMUSG00000048406 ENSMUST00000049927 B330016D10Rik pseudogene Interval_82646 chr18 75599789 75600210 + 0 NA intron (ENSMUSG00000052928.9, intron 6 of 11) protein_coding-intron (ENSMUSG00000052928.9, intron 6 of 11) 37274 ENSMUSG00000052928.9 ENSMUSG00000052928 ENSMUST00000235147 Ctif protein_coding Interval_172187 chrX 8288441 8289443 + 0 NA Intergenic Intergenic 17809 ENSMUSG00000031170.14 ENSMUSG00000031170 ENSMUST00000115590 Slc38a5 protein_coding Interval_161256 chr8 119304209 119306098 + 0 NA intron (ENSMUSG00000031841.19, intron 2 of 3) protein_coding-intron (ENSMUSG00000031841.19, intron 11 of 13) -39363 ENSMUSG00000031839.7 ENSMUSG00000031839 ENSMUST00000212795 Hsbp1 protein_coding Interval_104809 chr3 74217412 74218079 + 0 NA Intergenic Intergenic 24851 ENSMUSG00000096400.2 ENSMUSG00000096400 ENSMUST00000180234 Gm6098 processed_pseudogene Interval_8239 chr1 136670036 136671005 + 0 NA promoter-TSS (ENSMUSG00000097113.7) lincRNA-promoter-TSS (ENSMUSG00000097113.7) -12876 ENSMUSG00000097113.7 ENSMUSG00000097113 ENSMUST00000180962 Gm19705 lincRNA Interval_70985 chr17 17004617 17005646 + 0 NA Intergenic Intergenic 53579 ENSMUSG00000060149.7 ENSMUSG00000060149 ENSMUST00000071374 BC002059 lincRNA Interval_151538 chr7 123360659 123360857 + 0 NA intron (ENSMUSG00000030766.15, intron 1 of 19) protein_coding-intron (ENSMUSG00000030766.15, intron 1 of 18) 9093 ENSMUSG00000030766.15 ENSMUSG00000030766 ENSMUST00000205805 Arhgap17 protein_coding Interval_157895 chr8 75271384 75272626 + 0 NA Intergenic Intergenic 3659 ENSMUSG00000110515.1 ENSMUSG00000110515 ENSMUST00000212828 Gm9644 processed_pseudogene Interval_107278 chr3 105275225 105275476 + 0 NA Intergenic Intergenic 176377 ENSMUSG00000074346.6 ENSMUSG00000074346 ENSMUST00000130683 Kcnd3os antisense Interval_110970 chr4 10960750 10962160 + 0 NA Intergenic Intergenic 14847 ENSMUSG00000081715.1 ENSMUSG00000081715 ENSMUST00000117608 Rps11-ps3 processed_pseudogene Interval_51276 chr14 25693655 25694773 + 0 NA promoter-TSS (ENSMUSG00000021868.7) protein_coding-promoter-TSS (ENSMUSG00000021868.7) 20 ENSMUSG00000021868.7 ENSMUSG00000021868 ENSMUST00000223872 Ppif protein_coding Interval_72487 chr17 30130270 30130487 + 0 NA intron (ENSMUSG00000044477.12, intron 2 of 5) protein_coding-intron (ENSMUSG00000044477.12, intron 2 of 4) -5812 ENSMUSG00000044477.12 ENSMUSG00000044477 ENSMUST00000234091 Zfand3 protein_coding Interval_127774 chr5 107687826 107688839 + 0 NA promoter-TSS (ENSMUSG00000097035.2) lincRNA-promoter-TSS (ENSMUSG00000097035.2) 161 ENSMUSG00000105421.1 ENSMUSG00000105421 ENSMUST00000200000 5830411K02Rik TEC Interval_116880 chr4 117939245 117940218 + 0 NA TTS (ENSMUSG00000028538.12) protein_coding-TTS (ENSMUSG00000028538.12) -10318 ENSMUSG00000028539.14 ENSMUSG00000028539 ENSMUST00000150612 Artn protein_coding Interval_109119 chr3 135921326 135921754 + 0 NA intron (ENSMUSG00000104710.1, intron 2 of 3) antisense-intron (ENSMUSG00000104710.1, intron 2 of 3) -6692 ENSMUSG00000104710.1 ENSMUSG00000104710 ENSMUST00000198354 Gm31243 antisense Interval_169130 chr9 93262196 93263148 + 0 NA Intergenic Intergenic 129698 ENSMUSG00000098171.1 ENSMUSG00000098171 ENSMUST00000183322 Gm9621 processed_pseudogene Interval_77723 chr17 94693032 94693296 + 0 NA exon (ENSMUSG00000117586.1, exon 1 of 1) processed_pseudogene-exon (ENSMUSG00000117586.1, exon 1 of 1) 275 ENSMUSG00000117586.1 ENSMUSG00000117586 ENSMUST00000234452 Gm50006 processed_pseudogene Interval_155039 chr8 25886260 25887551 + 0 NA intron (ENSMUSG00000031576.16, intron 11 of 26) protein_coding-intron (ENSMUSG00000031576.16, intron 11 of 26) 24469 ENSMUSG00000031576.16 ENSMUSG00000031576 ENSMUST00000126226 Kcnu1 protein_coding Interval_90410 chr2 30270242 30270754 + 0 NA intron (ENSMUSG00000099041.1, intron 5 of 12) protein_coding-intron (ENSMUSG00000079484.12, intron 2 of 4) -9180 ENSMUSG00000079484.12 ENSMUSG00000079484 ENSMUST00000154988 Phyhd1 protein_coding Interval_24450 chr11 33354207 33355064 + 0 NA intron (ENSMUSG00000040594.19, intron 2 of 9) protein_coding-intron (ENSMUSG00000040594.19, intron 14 of 27) 40631 ENSMUSG00000069913.3 ENSMUSG00000069913 ENSMUST00000118265 Anp32-ps processed_pseudogene Interval_117535 chr4 124477317 124478266 + 0 NA intron (ENSMUSG00000084757.7, intron 2 of 3) lincRNA-intron (ENSMUSG00000084757.7, intron 2 of 3) -26506 ENSMUSG00000084757.7 ENSMUSG00000084757 ENSMUST00000156566 1700057H15Rik lincRNA Interval_91525 chr2 40935335 40936549 + 0 NA intron (ENSMUSG00000049252.17, intron 40 of 62) protein_coding-intron (ENSMUSG00000049252.17, intron 43 of 90) -22449 ENSMUSG00000082930.1 ENSMUSG00000082930 ENSMUST00000121472 Gm13462 processed_pseudogene Interval_38233 chr12 76546646 76549819 + 0 NA promoter-TSS (ENSMUSG00000112388.1) antisense-promoter-TSS (ENSMUSG00000112388.1) -380 ENSMUSG00000112388.1 ENSMUSG00000112388 ENSMUST00000218453 AI463170 antisense Interval_143906 chr7 17062227 17063184 + 0 NA promoter-TSS (ENSMUSG00000004328.15) protein_coding-promoter-TSS (ENSMUSG00000004328.15) -321 ENSMUSG00000004328.15 ENSMUSG00000004328 ENSMUST00000153833 Hif3a protein_coding Interval_120038 chr4 141478480 141479619 + 0 NA exon (ENSMUSG00000040761.16, exon 11 of 15) protein_coding-exon (ENSMUSG00000040761.16, exon 11 of 15) 9263 ENSMUSG00000040761.16 ENSMUSG00000040761 ENSMUST00000152081 Spen protein_coding Interval_109275 chr3 138555384 138556256 + 0 NA TTS (ENSMUSG00000028156.12) protein_coding-TTS (ENSMUSG00000028156.12) 24741 ENSMUSG00000106353.1 ENSMUSG00000106353 ENSMUST00000199110 Gm43726 processed_pseudogene Interval_89601 chr2 23155386 23156796 + 0 NA promoter-TSS (ENSMUSG00000026775.9) protein_coding-promoter-TSS (ENSMUSG00000026775.9) -194 ENSMUSG00000026779.6 ENSMUSG00000026779 ENSMUST00000136207 Mastl protein_coding Interval_145812 chr7 39514561 39515194 + 0 NA Intergenic Intergenic -2889 ENSMUSG00000068959.6 ENSMUSG00000068959 ENSMUST00000108015 Zfp619 protein_coding Interval_124674 chr5 53112746 53113926 + 0 NA intron (ENSMUSG00000029189.10, intron 23 of 23) protein_coding-intron (ENSMUSG00000029189.10, intron 23 of 23) -29824 ENSMUSG00000077316.1 ENSMUSG00000077316 ENSMUST00000104128 n-R5s171 rRNA Interval_144963 chr7 29137266 29138842 + 0 NA TTS (ENSMUSG00000090009.1) antisense-TTS (ENSMUSG00000090009.1) 2258 ENSMUSG00000090009.1 ENSMUSG00000090009 ENSMUST00000162641 Gm16282 antisense Interval_98795 chr2 155051572 155053311 + 0 NA Intergenic Intergenic 22006 ENSMUSG00000027597.15 ENSMUSG00000027597 ENSMUST00000146367 Ahcy protein_coding Interval_83496 chr18 87579689 87579908 + 0 NA Intergenic Intergenic 3590 ENSMUSG00000117683.1 ENSMUSG00000117683 ENSMUST00000237348 Gm50389 processed_pseudogene Interval_104296 chr3 63002978 63003399 + 0 NA Intergenic Intergenic -78955 ENSMUSG00000063001.10 ENSMUSG00000063001 ENSMUST00000077976 Gm9701 processed_pseudogene Interval_94314 chr2 88311113 88311482 + 0 NA exon (ENSMUSG00000080713.3, exon 2 of 2) protein_coding-exon (ENSMUSG00000080713.3, exon 2 of 2) 3392 ENSMUSG00000080713.3 ENSMUSG00000080713 ENSMUST00000213348 Olfr1174 protein_coding Interval_19389 chr10 98857192 98857754 + 0 NA Intergenic Intergenic -133407 ENSMUSG00000019943.10 ENSMUSG00000019943 ENSMUST00000218419 Atp2b1 protein_coding Interval_126809 chr5 93111161 93111696 + 0 NA intron (ENSMUSG00000058013.11, intron 1 of 9) protein_coding-intron (ENSMUSG00000058013.11, intron 1 of 9) 17892 ENSMUSG00000058013.11 ENSMUSG00000058013 ENSMUST00000201695 Septin11 protein_coding Interval_82084 chr18 67640796 67642526 + 0 NA promoter-TSS (ENSMUSG00000024537.5) protein_coding-promoter-TSS (ENSMUSG00000024537.5) 53 ENSMUSG00000024537.5 ENSMUSG00000024537 ENSMUST00000236522 Psmg2 protein_coding Interval_54960 chr14 76504101 76507377 + 0 NA TTS (ENSMUSG00000022010.19) protein_coding-TTS (ENSMUSG00000022010.19) -20853 ENSMUSG00000115092.1 ENSMUSG00000115092 ENSMUST00000227784 E130202H07Rik lincRNA Interval_114897 chr4 86783094 86783793 + 0 NA intron (ENSMUSG00000038024.17, intron 4 of 30) protein_coding-intron (ENSMUSG00000038024.17, intron 5 of 25) 9188 ENSMUSG00000038024.17 ENSMUSG00000038024 ENSMUST00000128710 Dennd4c protein_coding Interval_159329 chr8 93603074 93603807 + 0 NA intron (ENSMUSG00000110534.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000110534.1, intron 1 of 2) 25184 ENSMUSG00000110534.1 ENSMUSG00000110534 ENSMUST00000212213 Gm45708 lincRNA Interval_76904 chr17 84859949 84860545 + 0 NA Intergenic Intergenic 7709 ENSMUSG00000117631.1 ENSMUSG00000117631 ENSMUST00000234899 Gm9400 unprocessed_pseudogene Interval_150207 chr7 108055009 108055271 + 0 NA exon (ENSMUSG00000043855.7, exon 1 of 1) protein_coding-exon (ENSMUSG00000043855.7, exon 1 of 1) 4447 ENSMUSG00000043855.7 ENSMUSG00000043855 ENSMUST00000063151 Olfr479 protein_coding Interval_21393 chr10 128337319 128338641 + 0 NA exon (ENSMUSG00000005683.8, exon 1 of 1) protein_coding-exon (ENSMUSG00000005683.8, exon 1 of 1) 170 ENSMUSG00000005683.8 ENSMUSG00000005683 ENSMUST00000218159 Cs protein_coding Interval_127855 chr5 108274737 108274972 + 0 NA intron (ENSMUSG00000029265.4, intron 1 of 2) protein_coding-intron (ENSMUSG00000029265.4, intron 1 of 2) -2066 ENSMUSG00000029265.4 ENSMUSG00000029265 ENSMUST00000154862 Dr1 protein_coding Interval_49821 chr13 116525226 116525526 + 0 NA Intergenic Intergenic 138215 ENSMUSG00000114347.1 ENSMUSG00000114347 ENSMUST00000225601 Gm47913 lincRNA Interval_161205 chr8 118641974 118642255 + 0 NA intron (ENSMUSG00000031841.19, intron 2 of 7) protein_coding-intron (ENSMUSG00000031841.19, intron 2 of 13) -26235 ENSMUSG00000110667.1 ENSMUSG00000110667 ENSMUST00000211881 Gm45720 antisense Interval_66312 chr16 33071076 33073335 + 0 NA intron (ENSMUSG00000022802.2, intron 5 of 16) protein_coding-intron (ENSMUSG00000022802.2, intron 5 of 16) 4095 ENSMUSG00000077844.1 ENSMUSG00000077844 ENSMUST00000101027 Gm22231 miRNA Interval_23878 chr11 27515800 27516410 + 0 NA Intergenic Intergenic -8005 ENSMUSG00000082243.1 ENSMUSG00000082243 ENSMUST00000122413 Gm3810 processed_pseudogene Interval_126133 chr5 78153993 78154611 + 0 NA Intergenic Intergenic -244842 ENSMUSG00000106960.1 ENSMUSG00000106960 ENSMUST00000202676 Gm42673 processed_pseudogene Interval_139359 chr6 99388909 99390032 + 0 NA promoter-TSS (ENSMUSG00000093559.1) sense_intronic-promoter-TSS (ENSMUSG00000093559.1) -971 ENSMUSG00000093559.1 ENSMUSG00000093559 ENSMUST00000177278 Gm20705 sense_intronic Interval_172177 chrX 8218720 8220437 + 0 NA Intergenic Intergenic -13087 ENSMUSG00000031169.13 ENSMUSG00000031169 ENSMUST00000139744 Porcn protein_coding Interval_124433 chr5 46468355 46468644 + 0 NA Intergenic Intergenic -33630 ENSMUSG00000106875.1 ENSMUSG00000106875 ENSMUST00000202439 Gm43093 TEC Interval_88180 chr19 60364191 60364395 + 0 NA Intergenic Intergenic 104011 ENSMUSG00000045052.3 ENSMUSG00000045052 ENSMUST00000051277 Prlhr protein_coding Interval_29253 chr11 82297731 82298604 + 0 NA intron (ENSMUSG00000020702.13, intron 2 of 10) protein_coding-intron (ENSMUSG00000020702.13, intron 2 of 10) 7523 ENSMUSG00000020702.13 ENSMUSG00000020702 ENSMUST00000021043 Ccl1 protein_coding Interval_159883 chr8 104616256 104616465 + 0 NA promoter-TSS (ENSMUSG00000031881.6) protein_coding-promoter-TSS (ENSMUSG00000031881.6) 1622 ENSMUSG00000031881.6 ENSMUSG00000031881 ENSMUST00000212662 Cdh16 protein_coding Interval_146434 chr7 45865904 45866726 + 0 NA TTS (ENSMUSG00000002771.12) protein_coding-TTS (ENSMUSG00000002771.12) 4114 ENSMUSG00000002771.12 ENSMUSG00000002771 ENSMUST00000211250 Grin2d protein_coding Interval_72331 chr17 29245887 29247251 + 0 NA Intergenic Intergenic 6134 ENSMUSG00000024007.15 ENSMUSG00000024007 ENSMUST00000129157 Ppil1 protein_coding Interval_86445 chr19 40561473 40562993 + 0 NA intron (ENSMUSG00000025007.13, intron 14 of 18) protein_coding-intron (ENSMUSG00000025007.13, intron 14 of 18) -1175 ENSMUSG00000096592.1 ENSMUSG00000096592 ENSMUST00000120920 Gm15801 processed_pseudogene Interval_121275 chr4 154641850 154642078 + 0 NA exon (ENSMUSG00000085069.2, exon 2 of 2) antisense-exon (ENSMUSG00000085069.2, exon 2 of 2) 3737 ENSMUSG00000098424.1 ENSMUSG00000098424 ENSMUST00000183838 Gm27202 lincRNA Interval_125565 chr5 71525460 71526534 + 0 NA intron (ENSMUSG00000049387.10, intron 1 of 2) protein_coding-intron (ENSMUSG00000049387.10, intron 1 of 2) 22208 ENSMUSG00000049387.10 ENSMUSG00000049387 ENSMUST00000050129 Cox7b2 protein_coding Interval_51570 chr14 30379379 30379752 + 0 NA intron (ENSMUSG00000015968.18, intron 1 of 1) protein_coding-intron (ENSMUSG00000015968.18, intron 1 of 46) 4789 ENSMUSG00000114670.1 ENSMUSG00000114670 ENSMUST00000224661 Gm18072 processed_pseudogene Interval_151681 chr7 125987989 125988219 + 0 NA intron (ENSMUSG00000046182.8, intron 2 of 6) protein_coding-intron (ENSMUSG00000046182.8, intron 2 of 6) 76343 ENSMUSG00000108376.1 ENSMUSG00000108376 ENSMUST00000206586 Gm44874 TEC Interval_78457 chr18 12979972 12980199 + 0 NA intron (ENSMUSG00000024423.6, intron 5 of 6) protein_coding-intron (ENSMUSG00000024423.6, intron 4 of 10) 18586 ENSMUSG00000089129.1 ENSMUSG00000089129 ENSMUST00000158504 Gm26407 misc_RNA Interval_114726 chr4 84456114 84457650 + 0 NA intron (ENSMUSG00000028487.18, intron 2 of 5) protein_coding-intron (ENSMUSG00000028487.18, intron 4 of 7) -27758 ENSMUSG00000083743.1 ENSMUSG00000083743 ENSMUST00000119071 Gm12421 processed_pseudogene Interval_83300 chr18 83928170 83928464 + 0 NA Intergenic Intergenic 22521 ENSMUSG00000117826.1 ENSMUSG00000117826 ENSMUST00000235471 Gm50420 processed_pseudogene Interval_125427 chr5 67028325 67029090 + 0 NA intron (ENSMUSG00000037736.20, intron 13 of 21) protein_coding-intron (ENSMUSG00000037736.20, intron 13 of 20) 10669 ENSMUSG00000106785.1 ENSMUSG00000106785 ENSMUST00000202709 Gm42713 TEC Interval_66562 chr16 35118740 35119732 + 0 NA Intergenic Intergenic 70621 ENSMUSG00000035376.10 ENSMUSG00000035376 ENSMUST00000231556 Hacd2 protein_coding Interval_3916 chr1 64752961 64754077 + 0 NA Intergenic Intergenic -15770 ENSMUSG00000045005.9 ENSMUSG00000045005 ENSMUST00000116133 Fzd5 protein_coding Interval_142313 chr6 140599184 140599638 + 0 NA Intergenic Intergenic 23012 ENSMUSG00000107750.1 ENSMUSG00000107750 ENSMUST00000204392 Gm44013 TEC Interval_29101 chr11 80336679 80338056 + 0 NA intron (ENSMUSG00000017692.8, intron 6 of 8) protein_coding-intron (ENSMUSG00000017692.8, intron 6 of 8) -9036 ENSMUSG00000017692.8 ENSMUSG00000017692 ENSMUST00000157016 Rhbdl3 protein_coding Interval_73572 chr17 40613025 40613284 + 0 NA Intergenic Intergenic 14560 ENSMUSG00000095540.1 ENSMUSG00000095540 ENSMUST00000178498 Esp4 protein_coding Interval_97301 chr2 133335818 133336393 + 0 NA Intergenic Intergenic 5181 ENSMUSG00000098578.1 ENSMUSG00000098578 ENSMUST00000184570 Gm27449 snRNA Interval_66460 chr16 33999523 33999922 + 0 NA intron (ENSMUSG00000061751.16, intron 18 of 26) protein_coding-intron (ENSMUSG00000061751.16, intron 51 of 59) 7735 ENSMUSG00000116835.1 ENSMUSG00000116835 ENSMUST00000231993 Gm49594 processed_pseudogene Interval_171428 chr9 118227511 118227778 + 0 NA Intergenic Intergenic -60142 ENSMUSG00000084608.1 ENSMUSG00000084608 ENSMUST00000122659 Gm22198 misc_RNA Interval_15073 chr10 42341792 42342015 + 0 NA intron (ENSMUSG00000038302.14, intron 6 of 10) protein_coding-intron (ENSMUSG00000038302.14, intron 8 of 12) -10640 ENSMUSG00000081873.1 ENSMUSG00000081873 ENSMUST00000120526 Gm15197 processed_pseudogene Interval_24143 chr11 30699061 30700110 + 0 NA Intergenic Intergenic 6316 ENSMUSG00000083655.1 ENSMUSG00000083655 ENSMUST00000118660 Gm12099 processed_pseudogene Interval_14839 chr10 40396119 40396374 + 0 NA intron (ENSMUSG00000038481.13, intron 2 of 11) protein_coding-intron (ENSMUSG00000038481.13, intron 2 of 12) -46143 ENSMUSG00000038491.9 ENSMUSG00000038491 ENSMUST00000044774 Cdk19os antisense Interval_164086 chr9 31394481 31394838 + 0 NA TTS (ENSMUSG00000042185.14) protein_coding-TTS (ENSMUSG00000042185.14) -1492 ENSMUSG00000042185.14 ENSMUSG00000042185 ENSMUST00000143558 Nfrkb protein_coding Interval_107762 chr3 113601460 113602021 + 0 NA intron (ENSMUSG00000074264.12, intron 1 of 3) protein_coding-intron (ENSMUSG00000074264.12, intron 1 of 3) 4959 ENSMUSG00000074264.12 ENSMUSG00000074264 ENSMUST00000174147 Amy1 protein_coding Interval_122921 chr5 27365491 27366425 + 0 NA intron (ENSMUSG00000061576.15, intron 1 of 25) protein_coding-intron (ENSMUSG00000061576.15, intron 1 of 25) 135404 ENSMUSG00000048703.9 ENSMUSG00000048703 ENSMUST00000124535 Speer4b protein_coding Interval_67676 chr16 55887841 55889177 + 0 NA intron (ENSMUSG00000075033.4, intron 2 of 5) protein_coding-intron (ENSMUSG00000075033.4, intron 2 of 5) -4018 ENSMUSG00000116919.1 ENSMUSG00000116919 ENSMUST00000232524 Gm17809 processed_pseudogene Interval_61728 chr15 83623341 83623749 + 0 NA intron (ENSMUSG00000016763.15, intron 10 of 21) protein_coding-intron (ENSMUSG00000016763.15, intron 11 of 22) -9806 ENSMUSG00000016763.15 ENSMUSG00000016763 ENSMUST00000229057 Scube1 protein_coding Interval_32539 chr11 108268658 108269805 + 0 NA intron (ENSMUSG00000050965.14, intron 2 of 2) protein_coding-intron (ENSMUSG00000050965.14, intron 2 of 16) 87381 ENSMUSG00000084978.1 ENSMUSG00000084978 ENSMUST00000153899 Gm11655 antisense Interval_113452 chr4 55078801 55079603 + 0 NA intron (ENSMUSG00000060206.11, intron 11 of 12) protein_coding-intron (ENSMUSG00000060206.11, intron 9 of 10) -37361 ENSMUSG00000082704.1 ENSMUSG00000082704 ENSMUST00000120116 Gm12515 processed_pseudogene Interval_116126 chr4 107969532 107970078 + 0 NA intron (ENSMUSG00000008932.10, intron 1 of 10) protein_coding-intron (ENSMUSG00000008932.10, intron 1 of 10) 1471 ENSMUSG00000008932.10 ENSMUSG00000008932 ENSMUST00000124190 Slc1a7 protein_coding Interval_97149 chr2 131770607 131771671 + 0 NA Intergenic Intergenic -49301 ENSMUSG00000086831.1 ENSMUSG00000086831 ENSMUST00000138080 Gm14280 antisense Interval_839 chr1 12424576 12425089 + 0 NA Intergenic Intergenic -1154 ENSMUSG00000098555.1 ENSMUSG00000098555 ENSMUST00000183490 Mir6341 miRNA Interval_141448 chr6 128339822 128340065 + 0 NA intron (ENSMUSG00000001521.12, intron 1 of 3) protein_coding-intron (ENSMUSG00000001521.12, intron 1 of 10) 5032 ENSMUSG00000001521.12 ENSMUSG00000001521 ENSMUST00000157005 Tulp3 protein_coding Interval_102618 chr3 28543682 28543886 + 0 NA intron (ENSMUSG00000027692.16, intron 7 of 30) protein_coding-intron (ENSMUSG00000027692.16, intron 7 of 30) 123841 ENSMUSG00000092990.1 ENSMUSG00000092990 ENSMUST00000175249 Mir466q miRNA Interval_25289 chr11 46138536 46138958 + 0 NA intron (ENSMUSG00000011256.16, intron 7 of 11) protein_coding-intron (ENSMUSG00000011256.16, intron 18 of 22) 4625 ENSMUSG00000011256.16 ENSMUSG00000011256 ENSMUST00000153410 Adam19 protein_coding Interval_70537 chr17 11745842 11746319 + 0 NA intron (ENSMUSG00000023826.16, intron 6 of 10) protein_coding-intron (ENSMUSG00000023826.16, intron 7 of 11) -13735 ENSMUSG00000104466.1 ENSMUSG00000104466 ENSMUST00000194203 Gm10513 TEC Interval_53730 chr14 61274501 61275456 + 0 NA Intergenic Intergenic 9810 ENSMUSG00000114920.1 ENSMUSG00000114920 ENSMUST00000225947 Gm19097 processed_pseudogene Interval_10465 chr1 171137230 171138340 + 0 NA TTS (ENSMUSG00000058076.12) protein_coding-TTS (ENSMUSG00000058076.12) 12803 ENSMUSG00000058076.12 ENSMUSG00000058076 ENSMUST00000155798 Sdhc protein_coding Interval_167972 chr9 75090169 75090389 + 0 NA intron (ENSMUSG00000034593.16, intron 1 of 40) protein_coding-intron (ENSMUSG00000034593.16, intron 1 of 40) 8861 ENSMUSG00000090001.1 ENSMUSG00000090001 ENSMUST00000162765 Gm9719 processed_pseudogene Interval_1617 chr1 30046894 30047618 + 0 NA Intergenic Intergenic 61322 ENSMUSG00000096829.1 ENSMUSG00000096829 ENSMUST00000178702 Gm23771 miRNA Interval_57508 chr15 11961864 11962320 + 0 NA Intergenic Intergenic -3238 ENSMUSG00000088803.1 ENSMUSG00000088803 ENSMUST00000158178 Gm24074 misc_RNA Interval_105114 chr3 81627955 81628156 + 0 NA Intergenic Intergenic -71230 ENSMUSG00000102710.1 ENSMUSG00000102710 ENSMUST00000192718 Gm4857 processed_pseudogene Interval_64118 chr16 8532461 8534956 + 0 NA intron (ENSMUSG00000057880.12, intron 1 of 2) protein_coding-intron (ENSMUSG00000057880.12, intron 1 of 15) -49919 ENSMUSG00000057880.12 ENSMUSG00000057880 ENSMUST00000128459 Abat protein_coding Interval_154758 chr8 23162580 23163891 + 0 NA Intergenic Intergenic 9966 ENSMUSG00000063672.7 ENSMUSG00000063672 ENSMUST00000071588 Nkx6-3 protein_coding Interval_73569 chr17 40583725 40586021 + 0 NA Intergenic Intergenic 8280 ENSMUSG00000117190.1 ENSMUSG00000117190 ENSMUST00000233672 Esp5 protein_coding Interval_147528 chr7 68052680 68055597 + 0 NA intron (ENSMUSG00000005533.10, intron 2 of 20) protein_coding-intron (ENSMUSG00000005533.10, intron 2 of 20) -157700 ENSMUSG00000005533.10 ENSMUSG00000005533 ENSMUST00000208871 Igf1r protein_coding Interval_150255 chr7 109027994 109028516 + 0 NA intron (ENSMUSG00000031028.14, intron 1 of 1) protein_coding-intron (ENSMUSG00000031028.14, intron 9 of 11) 29569 ENSMUSG00000048330.14 ENSMUSG00000048330 ENSMUST00000129629 Ric3 protein_coding Interval_1633 chr1 30548212 30549479 + 0 NA Intergenic Intergenic 171117 ENSMUSG00000053185.2 ENSMUSG00000053185 ENSMUST00000065469 Gm9898 lincRNA Interval_120027 chr4 141431012 141431457 + 0 NA Intergenic Intergenic 4871 ENSMUSG00000070637.2 ENSMUSG00000070637 ENSMUST00000094544 Srarp protein_coding Interval_82392 chr18 73655680 73655940 + 0 NA intron (ENSMUSG00000024515.13, intron 4 of 7) protein_coding-intron (ENSMUSG00000024515.13, intron 8 of 11) -5991 ENSMUSG00000024515.13 ENSMUSG00000024515 ENSMUST00000129326 Smad4 protein_coding Interval_137726 chr6 81780768 81780965 + 0 NA Intergenic Intergenic -25925 ENSMUSG00000089445.1 ENSMUSG00000089445 ENSMUST00000158820 Gm22530 snoRNA Interval_81173 chr18 55672563 55672750 + 0 NA Intergenic Intergenic -49736 ENSMUSG00000092702.2 ENSMUSG00000092702 ENSMUST00000174961 Gm24514 misc_RNA Interval_7000 chr1 121699112 121699588 + 0 NA Intergenic Intergenic -7165 ENSMUSG00000102488.1 ENSMUSG00000102488 ENSMUST00000192952 Gm37920 TEC Interval_165192 chr9 45137923 45139334 + 0 NA exon (ENSMUSG00000046480.6, exon 1 of 5) protein_coding-exon (ENSMUSG00000046480.6, exon 1 of 5) 233 ENSMUSG00000046480.6 ENSMUSG00000046480 ENSMUST00000060125 Scn4b protein_coding Interval_86427 chr19 40404481 40404931 + 0 NA intron (ENSMUSG00000025006.18, intron 1 of 21) protein_coding-intron (ENSMUSG00000025006.18, intron 2 of 3) -27832 ENSMUSG00000025006.18 ENSMUSG00000025006 ENSMUST00000225293 Sorbs1 protein_coding Interval_163924 chr9 28569161 28569816 + 0 NA intron (ENSMUSG00000062257.13, intron 1 of 2) protein_coding-intron (ENSMUSG00000062257.13, intron 1 of 6) 276740 ENSMUSG00000106021.1 ENSMUSG00000106021 ENSMUST00000199274 Gm44316 miRNA Interval_159921 chr8 105210368 105210640 + 0 NA intron (ENSMUSG00000031885.14, intron 5 of 5) protein_coding-intron (ENSMUSG00000031885.14, intron 5 of 5) 6511 ENSMUSG00000084711.1 ENSMUSG00000084711 ENSMUST00000122762 Gm24629 misc_RNA Interval_174165 chrX 137019249 137020020 + 0 NA intron (ENSMUSG00000044348.14, intron 1 of 2) protein_coding-intron (ENSMUSG00000044348.14, intron 4 of 6) 21592 ENSMUSG00000083445.1 ENSMUSG00000083445 ENSMUST00000122144 Gm15038 transcribed_processed_pseudogene Interval_125758 chr5 73929650 73930375 + 0 NA Intergenic Intergenic -16369 ENSMUSG00000106968.1 ENSMUSG00000106968 ENSMUST00000202711 C78283 lincRNA Interval_58111 chr15 27998216 27999189 + 0 NA intron (ENSMUSG00000022263.10, intron 1 of 56) protein_coding-intron (ENSMUSG00000022263.10, intron 1 of 56) -3339 ENSMUSG00000022263.10 ENSMUSG00000022263 ENSMUST00000228950 Trio protein_coding Interval_40514 chr12 105417296 105418044 + 0 NA Intergenic Intergenic -13052 ENSMUSG00000113314.1 ENSMUSG00000113314 ENSMUST00000222652 Gm2721 lincRNA Interval_21779 chr11 4298716 4299494 + 0 NA Intergenic Intergenic 13645 ENSMUSG00000085512.1 ENSMUSG00000085512 ENSMUST00000127224 Gm11958 lincRNA Interval_37646 chr12 70795212 70795451 + 0 NA intron (ENSMUSG00000113900.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000113900.1, intron 1 of 2) 30014 ENSMUSG00000113900.1 ENSMUSG00000113900 ENSMUST00000222338 Gm40437 lincRNA Interval_124636 chr5 52633358 52634462 + 0 NA Intergenic Intergenic 14570 ENSMUSG00000029173.12 ENSMUSG00000029173 ENSMUST00000123856 Sepsecs protein_coding Interval_70776 chr17 14383859 14384257 + 0 NA intron (ENSMUSG00000023886.10, intron 9 of 12) protein_coding-intron (ENSMUSG00000023886.10, intron 9 of 12) 14884 ENSMUSG00000117328.1 ENSMUSG00000117328 ENSMUST00000233310 4930474M22Rik antisense Interval_29508 chr11 84523930 84526463 + 0 NA promoter-TSS (ENSMUSG00000087211.7) lincRNA-promoter-TSS (ENSMUSG00000087211.7) -464 ENSMUSG00000087211.7 ENSMUSG00000087211 ENSMUST00000128121 Lhx1os lincRNA Interval_161259 chr8 119351567 119352035 + 0 NA Intergenic Intergenic 7285 ENSMUSG00000031839.7 ENSMUSG00000031839 ENSMUST00000212795 Hsbp1 protein_coding Interval_74331 chr17 49017526 49018484 + 0 NA intron (ENSMUSG00000040490.4, intron 1 of 2) protein_coding-intron (ENSMUSG00000040490.4, intron 1 of 2) 78428 ENSMUSG00000105424.1 ENSMUSG00000105424 ENSMUST00000200509 Gm44304 miRNA Interval_31087 chr11 98051774 98053765 + 0 NA intron (ENSMUSG00000017400.10, intron 1 of 10) protein_coding-intron (ENSMUSG00000017400.10, intron 1 of 10) -9227 ENSMUSG00000017400.10 ENSMUSG00000017400 ENSMUST00000131519 Stac2 protein_coding Interval_102937 chr3 32965361 32966157 + 0 NA intron (ENSMUSG00000104283.1, intron 7 of 9) protein_coding-intron (ENSMUSG00000027674.16, intron 8 of 14) -8917 ENSMUSG00000104283.1 ENSMUSG00000104283 ENSMUST00000195007 Gm37459 antisense Interval_150927 chr7 116379323 116380728 + 0 NA intron (ENSMUSG00000030660.9, intron 9 of 33) protein_coding-intron (ENSMUSG00000030660.9, intron 8 of 32) 19692 ENSMUSG00000108500.1 ENSMUSG00000108500 ENSMUST00000206710 Gm45033 TEC Interval_100542 chr2 170034597 170035266 + 0 NA intron (ENSMUSG00000047907.11, intron 1 of 1) protein_coding-intron (ENSMUSG00000047907.11, intron 1 of 1) -71744 ENSMUSG00000103935.1 ENSMUSG00000103935 ENSMUST00000194482 AY702102 TEC Interval_78547 chr18 14632640 14632913 + 0 NA TTS (ENSMUSG00000037013.17) protein_coding-TTS (ENSMUSG00000037013.17) 4630 ENSMUSG00000037013.17 ENSMUSG00000037013 ENSMUST00000234544 Ss18 protein_coding Interval_68449 chr16 77006741 77007400 + 0 NA TTS (ENSMUSG00000100857.2) lincRNA-TTS (ENSMUSG00000100857.2) 3827 ENSMUSG00000100857.2 ENSMUSG00000100857 ENSMUST00000190317 1700041M19Rik lincRNA Interval_117032 chr4 119121064 119122040 + 0 NA intron (ENSMUSG00000028645.11, intron 2 of 8) protein_coding-intron (ENSMUSG00000028645.11, intron 2 of 9) -8227 ENSMUSG00000088552.1 ENSMUSG00000088552 ENSMUST00000157927 Mir1957a miRNA Interval_84110 chr19 7261334 7262178 + 0 NA Intergenic Intergenic 1815 ENSMUSG00000088680.1 ENSMUSG00000088680 ENSMUST00000158055 Gm23997 rRNA Interval_67251 chr16 44767781 44768365 + 0 NA intron (ENSMUSG00000022667.18, intron 1 of 7) protein_coding-intron (ENSMUSG00000022667.18, intron 1 of 6) 2274 ENSMUSG00000022667.18 ENSMUSG00000022667 ENSMUST00000134625 Cd200r1 protein_coding Interval_16466 chr10 63015653 63015841 + 0 NA TTS (ENSMUSG00000020069.16) protein_coding-TTS (ENSMUSG00000020069.16) 2337 ENSMUSG00000020069.16 ENSMUSG00000020069 ENSMUST00000119814 Hnrnph3 protein_coding Interval_7457 chr1 131505477 131506366 + 0 NA intron (ENSMUSG00000026425.15, intron 2 of 4) protein_coding-intron (ENSMUSG00000026425.15, intron 2 of 22) -7119 ENSMUSG00000076287.1 ENSMUSG00000076287 ENSMUST00000102332 Gm24273 miRNA Interval_34392 chr12 3825356 3826252 + 0 NA intron (ENSMUSG00000020661.15, intron 1 of 22) protein_coding-intron (ENSMUSG00000020661.15, intron 1 of 22) 18644 ENSMUSG00000020661.15 ENSMUSG00000020661 ENSMUST00000172913 Dnmt3a protein_coding Interval_116963 chr4 118485149 118487365 + 0 NA exon (ENSMUSG00000033191.14, exon 3 of 23) protein_coding-exon (ENSMUSG00000033191.14, exon 3 of 23) 3498 ENSMUSG00000033191.14 ENSMUSG00000033191 ENSMUST00000153286 Tie1 protein_coding Interval_65472 chr16 22554290 22555611 + 0 NA intron (ENSMUSG00000022861.17, intron 19 of 19) protein_coding-intron (ENSMUSG00000022861.17, intron 18 of 23) 6397 ENSMUSG00000089663.1 ENSMUSG00000089663 ENSMUST00000159953 Gm15651 antisense Interval_105433 chr3 86274091 86274359 + 0 NA intron (ENSMUSG00000028080.16, intron 1 of 38) protein_coding-intron (ENSMUSG00000028080.16, intron 2 of 56) 1137 ENSMUSG00000077744.1 ENSMUSG00000077744 ENSMUST00000104556 Gm26343 snoRNA Interval_56798 chr14 122160948 122161366 + 0 NA Intergenic Intergenic 39604 ENSMUSG00000090674.1 ENSMUSG00000090674 ENSMUST00000166043 Gm17082 processed_pseudogene Interval_12320 chr1 191680137 191680339 + 0 NA Intergenic Intergenic -37789 ENSMUSG00000026623.16 ENSMUSG00000026623 ENSMUST00000130876 Lpgat1 protein_coding Interval_91846 chr2 50264657 50266154 + 0 NA Intergenic Intergenic 31018 ENSMUSG00000026766.16 ENSMUSG00000026766 ENSMUST00000133768 Mmadhc protein_coding Interval_90973 chr2 33836625 33836860 + 0 NA intron (ENSMUSG00000038740.9, intron 3 of 7) protein_coding-intron (ENSMUSG00000038740.9, intron 3 of 9) 23785 ENSMUSG00000089596.1 ENSMUSG00000089596 ENSMUST00000158971 Nron misc_RNA Interval_53136 chr14 54653286 54653959 + 0 NA promoter-TSS (ENSMUSG00000022185.19) protein_coding-promoter-TSS (ENSMUSG00000022185.19) 3111 ENSMUSG00000040840.7 ENSMUSG00000040840 ENSMUST00000167763 4930579G18Rik antisense Interval_90414 chr2 30308769 30310388 + 0 NA intron (ENSMUSG00000052533.14, intron 10 of 22) protein_coding-intron (ENSMUSG00000052533.14, intron 10 of 43) 14408 ENSMUSG00000084892.1 ENSMUSG00000084892 ENSMUST00000141035 Gm14471 processed_transcript Interval_34388 chr12 3795280 3796281 + 0 NA Intergenic Intergenic -11380 ENSMUSG00000020661.15 ENSMUSG00000020661 ENSMUST00000172913 Dnmt3a protein_coding Interval_107498 chr3 108134366 108134534 + 0 NA intron (ENSMUSG00000000001.4, intron 1 of 8) protein_coding-intron (ENSMUSG00000000001.4, intron 1 of 8) 11696 ENSMUSG00000000001.4 ENSMUSG00000000001 ENSMUST00000000001 Gnai3 protein_coding Interval_49297 chr13 110394179 110395824 + 0 NA promoter-TSS (ENSMUSG00000021701.8) protein_coding-promoter-TSS (ENSMUSG00000021701.8) -1011 ENSMUSG00000021701.8 ENSMUSG00000021701 ENSMUST00000225156 Plk2 protein_coding Interval_84582 chr19 13671383 13671725 + 0 NA Intergenic Intergenic 20463 ENSMUSG00000061387.3 ENSMUSG00000061387 ENSMUST00000080162 Olfr1490 protein_coding Interval_150940 chr7 116518070 116518372 + 0 NA intron (ENSMUSG00000030659.14, intron 2 of 12) protein_coding-intron (ENSMUSG00000030659.14, intron 2 of 13) -10591 ENSMUSG00000030659.14 ENSMUSG00000030659 ENSMUST00000183335 Nucb2 protein_coding Interval_91875 chr2 50913930 50914351 + 0 NA Intergenic Intergenic 4456 ENSMUSG00000083270.1 ENSMUSG00000083270 ENSMUST00000119159 Gm13498 processed_pseudogene Interval_126636 chr5 91402293 91403179 + 0 NA promoter-TSS (ENSMUSG00000082361.6) protein_coding-promoter-TSS (ENSMUSG00000082361.6) 86 ENSMUSG00000082361.6 ENSMUSG00000082361 ENSMUST00000201090 Btc protein_coding Interval_32035 chr11 104595371 104596671 + 0 NA TTS (ENSMUSG00000061086.12) protein_coding-TTS (ENSMUSG00000061086.12) 13982 ENSMUSG00000061086.12 ENSMUSG00000061086 ENSMUST00000136244 Myl4 protein_coding Interval_130106 chr5 124316063 124316259 + 0 NA exon (ENSMUSG00000038126.17, exon 3 of 11) protein_coding-exon (ENSMUSG00000038126.17, exon 3 of 11) 11691 ENSMUSG00000038126.17 ENSMUSG00000038126 ENSMUST00000156013 Mphosph9 protein_coding Interval_11573 chr1 182839334 182840221 + 0 NA intron (ENSMUSG00000038576.15, intron 3 of 3) protein_coding-intron (ENSMUSG00000038576.15, intron 2 of 7) -67933 ENSMUSG00000102291.1 ENSMUSG00000102291 ENSMUST00000192563 Gm37542 TEC Interval_91430 chr2 38784363 38785464 + 0 NA promoter-TSS (ENSMUSG00000063972.13) protein_coding-promoter-TSS (ENSMUSG00000063972.13) 7177 ENSMUSG00000082508.1 ENSMUSG00000082508 ENSMUST00000122372 Rpl15-ps4 processed_pseudogene Interval_113126 chr4 48513402 48513675 + 0 NA Intergenic Intergenic -27008 ENSMUSG00000039693.11 ENSMUSG00000039693 ENSMUST00000132360 Msantd3 protein_coding Interval_2772 chr1 44613014 44614032 + 0 NA intron (ENSMUSG00000056870.9, intron 2 of 3) protein_coding-intron (ENSMUSG00000056870.9, intron 1 of 10) -30756 ENSMUSG00000089877.1 ENSMUSG00000089877 ENSMUST00000160955 Gm16102 processed_pseudogene Interval_66215 chr16 32363775 32364094 + 0 NA intron (ENSMUSG00000053774.9, intron 3 of 9) protein_coding-intron (ENSMUSG00000053774.9, intron 3 of 10) 31669 ENSMUSG00000053774.9 ENSMUSG00000053774 ENSMUST00000232137 Ubxn7 protein_coding Interval_103157 chr3 36074697 36075799 + 0 NA exon (ENSMUSG00000027710.14, exon 5 of 18) protein_coding-exon (ENSMUSG00000027710.14, exon 5 of 18) -13611 ENSMUSG00000105055.1 ENSMUSG00000105055 ENSMUST00000199794 Gm43079 antisense Interval_129975 chr5 123406778 123407213 + 0 NA exon (ENSMUSG00000106636.1, exon 1 of 2) processed_transcript-exon (ENSMUSG00000106636.1, exon 1 of 2) 508 ENSMUSG00000106636.1 ENSMUSG00000106636 ENSMUST00000200134 Gm43813 processed_transcript Interval_82984 chr18 80169274 80170809 + 0 NA Intergenic Intergenic 7289 ENSMUSG00000117904.1 ENSMUSG00000117904 ENSMUST00000237659 Gm7447 processed_pseudogene Interval_163453 chr9 21516253 21516647 + 0 NA Intergenic Intergenic -6216 ENSMUSG00000032180.11 ENSMUSG00000032180 ENSMUST00000213167 Tmed1 protein_coding Interval_119563 chr4 138383273 138384618 + 0 NA Intergenic Intergenic -11253 ENSMUSG00000046109.6 ENSMUSG00000046109 ENSMUST00000062902 AB041806 antisense Interval_155888 chr8 40650132 40651119 + 0 NA Intergenic Intergenic -15828 ENSMUSG00000039431.16 ENSMUSG00000039431 ENSMUST00000174537 Mtmr7 protein_coding Interval_7127 chr1 126773727 126773942 + 0 NA intron (ENSMUSG00000049690.15, intron 1 of 2) protein_coding-intron (ENSMUSG00000049690.15, intron 1 of 12) 102781 ENSMUSG00000101600.1 ENSMUSG00000101600 ENSMUST00000188266 4930599A14Rik lincRNA Interval_110805 chr4 8560548 8561004 + 0 NA intron (ENSMUSG00000047187.9, intron 1 of 7) protein_coding-intron (ENSMUSG00000047187.9, intron 1 of 7) 25132 ENSMUSG00000047187.9 ENSMUSG00000047187 ENSMUST00000060232 Rab2a protein_coding Interval_22160 chr11 6699348 6699569 + 0 NA Intergenic Intergenic 13634 ENSMUSG00000083075.1 ENSMUSG00000083075 ENSMUST00000121445 Gm11980 processed_pseudogene Interval_35181 chr12 17849772 17850039 + 0 NA Intergenic Intergenic -32292 ENSMUSG00000113294.1 ENSMUSG00000113294 ENSMUST00000223226 Gm49326 unprocessed_pseudogene Interval_103671 chr3 51518096 51518935 + 0 NA exon (ENSMUSG00000037111.9, exon 8 of 8) protein_coding-exon (ENSMUSG00000037111.9, exon 8 of 8) 18132 ENSMUSG00000037111.9 ENSMUSG00000037111 ENSMUST00000194828 Setd7 protein_coding Interval_82339 chr18 71093310 71093610 + 0 NA Intergenic Intergenic -185809 ENSMUSG00000118271.1 ENSMUSG00000118271 ENSMUST00000236972 Gm50262 processed_pseudogene Interval_109164 chr3 137328369 137328582 + 0 NA Intergenic Intergenic -12699 ENSMUSG00000054690.17 ENSMUSG00000054690 ENSMUST00000197511 Emcn protein_coding Interval_127382 chr5 103638130 103638533 + 0 NA Intergenic Intergenic 3106 ENSMUSG00000105018.1 ENSMUSG00000105018 ENSMUST00000196721 Gm43546 TEC Interval_157746 chr8 72722894 72724016 + 0 NA promoter-TSS (ENSMUSG00000031622.16) protein_coding-promoter-TSS (ENSMUSG00000031622.16) -17396 ENSMUSG00000031622.16 ENSMUSG00000031622 ENSMUST00000212677 Sin3b protein_coding Interval_130965 chr5 134296399 134297161 + 0 NA exon (ENSMUSG00000060261.15, exon 1 of 1) protein_coding-exon (ENSMUSG00000060261.15, exon 1 of 1) 394 ENSMUSG00000060261.15 ENSMUSG00000060261 ENSMUST00000202343 Gtf2i protein_coding Interval_116568 chr4 115754798 115755069 + 0 NA intron (ENSMUSG00000034210.14, intron 4 of 4) protein_coding-intron (ENSMUSG00000034210.14, intron 4 of 11) -11535 ENSMUSG00000034210.14 ENSMUSG00000034210 ENSMUST00000141927 Efcab14 protein_coding Interval_42224 chr13 10193761 10193992 + 0 NA intron (ENSMUSG00000046159.16, intron 2 of 2) protein_coding-intron (ENSMUSG00000046159.16, intron 2 of 4) -13069 ENSMUSG00000113261.1 ENSMUSG00000113261 ENSMUST00000222625 Gm47404 sense_intronic Interval_138114 chr6 85270002 85270285 + 0 NA intron (ENSMUSG00000033720.12, intron 6 of 7) protein_coding-intron (ENSMUSG00000033720.12, intron 6 of 13) 63279 ENSMUSG00000033720.12 ENSMUSG00000033720 ENSMUST00000203035 Sfxn5 protein_coding Interval_133268 chr5 150969845 150970711 + 0 NA intron (ENSMUSG00000058488.7, intron 1 of 2) protein_coding-intron (ENSMUSG00000058488.7, intron 1 of 4) 17574 ENSMUSG00000058488.7 ENSMUSG00000058488 ENSMUST00000202096 Kl protein_coding Interval_140823 chr6 121788526 121788829 + 0 NA intron (ENSMUSG00000108022.1, intron 35 of 35) protein_coding-intron (ENSMUSG00000108022.1, intron 35 of 35) -52427 ENSMUSG00000059908.9 ENSMUSG00000059908 ENSMUST00000204210 Mug1 protein_coding Interval_110914 chr4 10111136 10111553 + 0 NA Intergenic Intergenic 151990 ENSMUSG00000082501.1 ENSMUSG00000082501 ENSMUST00000120635 Gm11835 processed_pseudogene Interval_127053 chr5 99970205 99970487 + 0 NA intron (ENSMUSG00000000568.15, intron 1 of 7) protein_coding-intron (ENSMUSG00000000568.15, intron 2 of 7) -7340 ENSMUSG00000091623.2 ENSMUSG00000091623 ENSMUST00000046721 Gm17092 antisense Interval_174066 chrX 134194941 134195954 + 0 NA intron (ENSMUSG00000052549.4, intron 3 of 9) protein_coding-intron (ENSMUSG00000052549.4, intron 3 of 9) 7946 ENSMUSG00000052549.4 ENSMUSG00000052549 ENSMUST00000064476 Arl13a protein_coding Interval_96306 chr2 121429594 121429804 + 0 NA intron (ENSMUSG00000027248.13, intron 3 of 3) protein_coding-intron (ENSMUSG00000027248.13, intron 5 of 12) 11452 ENSMUSG00000027246.12 ENSMUSG00000027246 ENSMUST00000153866 Ell3 protein_coding Interval_77535 chr17 90995208 90995783 + 0 NA intron (ENSMUSG00000024109.18, intron 1 of 20) protein_coding-intron (ENSMUSG00000024109.18, intron 1 of 20) -92911 ENSMUSG00000105477.1 ENSMUSG00000105477 ENSMUST00000198489 Gm47307 miRNA Interval_157080 chr8 65022355 65023124 + 0 NA intron (ENSMUSG00000109805.1, intron 2 of 2) processed_transcript-intron (ENSMUSG00000109805.1, intron 2 of 2) -4155 ENSMUSG00000053490.8 ENSMUSG00000053490 ENSMUST00000048565 Trim60 protein_coding Interval_145619 chr7 36079994 36081216 + 0 NA Intergenic Intergenic -16773 ENSMUSG00000108711.1 ENSMUSG00000108711 ENSMUST00000205504 Gm38991 lincRNA Interval_48515 chr13 99614112 99614602 + 0 NA Intergenic Intergenic -27617 ENSMUSG00000103545.1 ENSMUSG00000103545 ENSMUST00000193492 1700012J22Rik TEC Interval_38844 chr12 83308486 83309736 + 0 NA intron (ENSMUSG00000021221.15, intron 6 of 10) protein_coding-intron (ENSMUSG00000021221.15, intron 4 of 6) 178605 ENSMUSG00000021221.15 ENSMUSG00000021221 ENSMUST00000177801 Dpf3 protein_coding Interval_45856 chr13 58571291 58572602 + 0 NA intron (ENSMUSG00000021553.14, intron 9 of 17) protein_coding-intron (ENSMUSG00000021553.14, intron 9 of 17) 25918 ENSMUSG00000114234.1 ENSMUSG00000114234 ENSMUST00000223882 Gm3131 processed_pseudogene Interval_123703 chr5 34610562 34611377 + 0 NA intron (ENSMUSG00000029106.14, intron 6 of 14) protein_coding-intron (ENSMUSG00000029106.14, intron 6 of 15) -5798 ENSMUSG00000029106.14 ENSMUSG00000029106 ENSMUST00000139044 Add1 protein_coding Interval_149704 chr7 100810016 100811081 + 0 NA promoter-TSS (ENSMUSG00000109109.1) TEC-promoter-TSS (ENSMUSG00000109109.1) -804 ENSMUSG00000109109.1 ENSMUSG00000109109 ENSMUST00000208745 Gm44953 TEC Interval_74062 chr17 46333858 46334159 + 0 NA Intergenic Intergenic -6032 ENSMUSG00000032842.13 ENSMUSG00000032842 ENSMUST00000170168 Abcc10 protein_coding Interval_98750 chr2 154676776 154678507 + 0 NA intron (ENSMUSG00000038467.15, intron 1 of 4) protein_coding-intron (ENSMUSG00000038467.15, intron 1 of 4) 25936 ENSMUSG00000038467.15 ENSMUSG00000038467 ENSMUST00000136788 Chmp4b protein_coding Interval_148047 chr7 78826846 78827385 + 0 NA TTS (ENSMUSG00000030610.13) protein_coding-TTS (ENSMUSG00000030610.13) 7073 ENSMUSG00000030610.13 ENSMUSG00000030610 ENSMUST00000032839 Det1 protein_coding Interval_66428 chr16 33797695 33798157 + 0 NA intron (ENSMUSG00000022824.12, intron 2 of 12) protein_coding-intron (ENSMUSG00000022824.12, intron 1 of 11) -1830 ENSMUSG00000090214.8 ENSMUSG00000090214 ENSMUST00000159501 Gm15657 antisense Interval_109384 chr3 141211822 141212092 + 0 NA exon (ENSMUSG00000047674.2, exon 1 of 1) protein_coding-exon (ENSMUSG00000047674.2, exon 1 of 1) 398 ENSMUSG00000047674.2 ENSMUSG00000047674 ENSMUST00000057860 Pdha2 protein_coding Interval_115622 chr4 101445532 101447147 + 0 NA promoter-TSS (ENSMUSG00000028527.18) protein_coding-promoter-TSS (ENSMUSG00000028527.18) -884 ENSMUSG00000028527.18 ENSMUSG00000028527 ENSMUST00000155749 Ak4 protein_coding Interval_18192 chr10 83557859 83558252 + 0 NA intron (ENSMUSG00000034560.6, intron 10 of 32) protein_coding-intron (ENSMUSG00000034560.6, intron 10 of 32) -27738 ENSMUSG00000034560.6 ENSMUSG00000034560 ENSMUST00000219582 Washc4 protein_coding Interval_121852 chr5 8840639 8841276 + 0 NA intron (ENSMUSG00000028970.9, intron 1 of 4) protein_coding-intron (ENSMUSG00000028970.9, intron 21 of 27) 9810 ENSMUSG00000105870.1 ENSMUSG00000105870 ENSMUST00000197499 7330423F06Rik TEC Interval_99602 chr2 163480409 163482469 + 0 NA Intergenic Intergenic -8810 ENSMUSG00000048486.6 ENSMUSG00000048486 ENSMUST00000109418 Fitm2 protein_coding Interval_117571 chr4 124733391 124733915 + 0 NA Intergenic Intergenic 1959 ENSMUSG00000076271.1 ENSMUSG00000076271 ENSMUST00000102316 Mir697 miRNA Interval_156868 chr8 61325876 61327074 + 0 NA intron (ENSMUSG00000031642.9, intron 2 of 10) protein_coding-intron (ENSMUSG00000031642.9, intron 2 of 11) -35114 ENSMUSG00000031642.9 ENSMUSG00000031642 ENSMUST00000210210 Sh3rf1 protein_coding Interval_161922 chr8 123783838 123784360 + 0 NA intron (ENSMUSG00000092329.1, intron 1 of 15) protein_coding-intron (ENSMUSG00000092329.1, intron 1 of 15) 16548 ENSMUSG00000110456.1 ENSMUSG00000110456 ENSMUST00000211815 Gm45865 TEC Interval_8096 chr1 135708184 135708996 + 0 NA Intergenic Intergenic -11471 ENSMUSG00000026421.14 ENSMUSG00000026421 ENSMUST00000027677 Csrp1 protein_coding Interval_171750 chr9 120708199 120709624 + 0 NA Intergenic Intergenic -2674 ENSMUSG00000111679.1 ENSMUSG00000111679 ENSMUST00000213340 Gm47063 TEC Interval_46937 chr13 73563940 73564270 + 0 NA intron (ENSMUSG00000021609.6, intron 8 of 14) protein_coding-intron (ENSMUSG00000021609.6, intron 8 of 14) 27358 ENSMUSG00000021609.6 ENSMUSG00000021609 ENSMUST00000022100 Slc6a3 protein_coding Interval_95627 chr2 113059370 113060274 + 0 NA intron (ENSMUSG00000057378.15, intron 1 of 103) protein_coding-intron (ENSMUSG00000057378.15, intron 1 of 102) -225910 ENSMUSG00000041255.2 ENSMUSG00000041255 ENSMUST00000040856 Tmco5b protein_coding Interval_81776 chr18 64558262 64558642 + 0 NA intron (ENSMUSG00000039529.9, intron 15 of 27) protein_coding-intron (ENSMUSG00000039529.9, intron 15 of 27) 43191 ENSMUSG00000117808.1 ENSMUSG00000117808 ENSMUST00000235291 Gm50338 TEC Interval_90064 chr2 27675881 27678078 + 0 NA promoter-TSS (ENSMUSG00000015846.15) protein_coding-promoter-TSS (ENSMUSG00000015846.15) -48240 ENSMUSG00000015846.15 ENSMUSG00000015846 ENSMUST00000148756 Rxra protein_coding Interval_125861 chr5 75118854 75119339 + 0 NA intron (ENSMUSG00000107192.1, intron 1 of 3) lincRNA-intron (ENSMUSG00000107192.1, intron 1 of 3) 8775 ENSMUSG00000107192.1 ENSMUSG00000107192 ENSMUST00000202993 Gm19583 lincRNA Interval_152682 chr7 136209083 136210649 + 0 NA Intergenic Intergenic -36570 ENSMUSG00000110396.1 ENSMUSG00000110396 ENSMUST00000209653 Gm36737 lincRNA Interval_107576 chr3 108590972 108592057 + 0 NA exon (ENSMUSG00000040389.15, exon 1 of 15) protein_coding-exon (ENSMUSG00000040389.15, exon 1 of 15) 11301 ENSMUSG00000081499.1 ENSMUSG00000081499 ENSMUST00000122082 Gm12517 processed_pseudogene Interval_97406 chr2 135812723 135815304 + 0 NA intron (ENSMUSG00000039943.16, intron 2 of 36) protein_coding-intron (ENSMUSG00000039943.16, intron 1 of 35) -1086 ENSMUSG00000086928.1 ENSMUSG00000086928 ENSMUST00000140949 Gm14210 lincRNA Interval_133277 chr5 151044588 151045357 + 0 NA intron (ENSMUSG00000016128.14, intron 12 of 13) protein_coding-intron (ENSMUSG00000016128.14, intron 12 of 13) -35671 ENSMUSG00000106963.1 ENSMUSG00000106963 ENSMUST00000201408 Gm8675 processed_pseudogene Interval_161933 chr8 123849419 123850274 + 0 NA intron (ENSMUSG00000031971.15, intron 2 of 3) protein_coding-intron (ENSMUSG00000031971.15, intron 1 of 2) -3983 ENSMUSG00000083911.1 ENSMUSG00000083911 ENSMUST00000118982 Gm4342 processed_pseudogene Interval_39201 chr12 85792545 85793903 + 0 NA intron (ENSMUSG00000034258.4, intron 3 of 6) protein_coding-intron (ENSMUSG00000034258.4, intron 3 of 9) 18394 ENSMUSG00000034258.4 ENSMUSG00000034258 ENSMUST00000221585 Flvcr2 protein_coding Interval_142144 chr6 137597617 137598414 + 0 NA intron (ENSMUSG00000015766.14, intron 1 of 4) protein_coding-intron (ENSMUSG00000015766.14, intron 1 of 21) -4440 ENSMUSG00000107878.1 ENSMUSG00000107878 ENSMUST00000203153 Gm44106 TEC Interval_168563 chr9 83600476 83601016 + 0 NA exon (ENSMUSG00000032261.16, exon 4 of 4) protein_coding-exon (ENSMUSG00000032261.16, exon 4 of 4) -27457 ENSMUSG00000110950.1 ENSMUSG00000110950 ENSMUST00000213703 Gm39384 lincRNA Interval_56090 chr14 105545803 105546218 + 0 NA Intergenic Intergenic 27914 ENSMUSG00000115386.1 ENSMUSG00000115386 ENSMUST00000226350 Gm35909 lincRNA Interval_90905 chr2 33401399 33402802 + 0 NA Intergenic Intergenic 29217 ENSMUSG00000068966.10 ENSMUSG00000068966 ENSMUST00000134589 Zbtb34 protein_coding Interval_115477 chr4 99248598 99249158 + 0 NA intron (ENSMUSG00000028550.15, intron 10 of 10) protein_coding-intron (ENSMUSG00000028550.15, intron 10 of 10) -23793 ENSMUSG00000104479.1 ENSMUSG00000104479 ENSMUST00000195331 Gm10305 TEC Interval_40089 chr12 101095387 101095686 + 0 NA Intergenic Intergenic 13085 ENSMUSG00000097121.2 ENSMUSG00000097121 ENSMUST00000220889 D130020L05Rik antisense Interval_82613 chr18 75426044 75426716 + 0 NA Intergenic Intergenic 57390 ENSMUSG00000025880.11 ENSMUSG00000025880 ENSMUST00000172718 Smad7 protein_coding Interval_100233 chr2 167817280 167817507 + 0 NA Intergenic Intergenic 16253 ENSMUSG00000087684.1 ENSMUSG00000087684 ENSMUST00000143649 1200007C13Rik lincRNA Interval_146972 chr7 56511564 56512055 + 0 NA intron (ENSMUSG00000030450.11, intron 22 of 22) protein_coding-intron (ENSMUSG00000030450.11, intron 23 of 23) -236465 ENSMUSG00000108488.1 ENSMUSG00000108488 ENSMUST00000206218 Gm44979 processed_pseudogene Interval_157928 chr8 76412004 76412680 + 0 NA intron (ENSMUSG00000110485.1, intron 1 of 9) lincRNA-intron (ENSMUSG00000110485.1, intron 1 of 9) 2698 ENSMUSG00000110485.1 ENSMUSG00000110485 ENSMUST00000212103 Gm45740 lincRNA Interval_18414 chr10 85624617 85625578 + 0 NA intron (ENSMUSG00000020042.15, intron 5 of 16) protein_coding-intron (ENSMUSG00000020042.15, intron 5 of 9) -20106 ENSMUSG00000020042.15 ENSMUSG00000020042 ENSMUST00000145433 Btbd11 protein_coding Interval_147933 chr7 75744500 75744722 + 0 NA intron (ENSMUSG00000066406.16, intron 34 of 37) protein_coding-intron (ENSMUSG00000066406.16, intron 33 of 36) 12757 ENSMUSG00000076961.1 ENSMUSG00000076961 ENSMUST00000103773 Gm23251 miRNA Interval_35445 chr12 21862873 21863120 + 0 NA Intergenic Intergenic -86289 ENSMUSG00000091105.1 ENSMUSG00000091105 ENSMUST00000164169 Mrto4-ps2 processed_pseudogene Interval_134363 chr6 26734427 26734845 + 0 NA Intergenic Intergenic -95781 ENSMUSG00000106742.1 ENSMUSG00000106742 ENSMUST00000201073 Gm42474 processed_pseudogene Interval_70656 chr17 12858114 12859165 + 0 NA intron (ENSMUSG00000068037.11, intron 3 of 8) protein_coding-intron (ENSMUSG00000068037.11, intron 3 of 8) -4179 ENSMUSG00000068037.11 ENSMUSG00000068037 ENSMUST00000159865 Mas1 protein_coding Interval_92334 chr2 59018955 59019336 + 0 NA intron (ENSMUSG00000036641.9, intron 1 of 14) protein_coding-intron (ENSMUSG00000036641.9, intron 1 of 14) -59438 ENSMUSG00000082989.1 ENSMUSG00000082989 ENSMUST00000120771 Gm13557 processed_pseudogene Interval_56138 chr14 106656208 106657128 + 0 NA Intergenic Intergenic -36309 ENSMUSG00000115763.1 ENSMUSG00000115763 ENSMUST00000226553 Gm48974 processed_pseudogene Interval_53516 chr14 58018994 58019243 + 0 NA Intergenic Intergenic 19734 ENSMUSG00000097303.2 ENSMUSG00000097303 ENSMUST00000224786 3110083C13Rik bidirectional_promoter_lncRNA Interval_136670 chr6 57478473 57479054 + 0 NA intron (ENSMUSG00000093535.1, intron 2 of 6) antisense-intron (ENSMUSG00000093535.1, intron 2 of 6) 2066 ENSMUSG00000093535.1 ENSMUSG00000093535 ENSMUST00000176290 4930533I22Rik antisense Interval_144581 chr7 26391678 26391914 + 0 NA TTS (ENSMUSG00000040614.14) protein_coding-TTS (ENSMUSG00000040614.14) 11904 ENSMUSG00000040614.14 ENSMUSG00000040614 ENSMUST00000160277 Nlrp9c protein_coding Interval_49619 chr13 113587143 113587748 + 0 NA Intergenic Intergenic -19678 ENSMUSG00000114715.1 ENSMUSG00000114715 ENSMUST00000225395 Gm34471 lincRNA Interval_60438 chr15 73755115 73756101 + 0 NA intron (ENSMUSG00000059895.13, intron 3 of 3) protein_coding-intron (ENSMUSG00000059895.13, intron 4 of 5) 7890 ENSMUSG00000059895.13 ENSMUSG00000059895 ENSMUST00000053232 Ptp4a3 protein_coding Interval_127940 chr5 109602423 109603338 + 0 NA Intergenic Intergenic 3801 ENSMUSG00000098393.1 ENSMUSG00000098393 ENSMUST00000184380 Gm28000 misc_RNA Interval_4741 chr1 78200343 78201799 + 0 NA Intergenic Intergenic -3958 ENSMUSG00000004872.15 ENSMUSG00000004872 ENSMUST00000172555 Pax3 protein_coding Interval_168561 chr9 83568637 83569571 + 0 NA intron (ENSMUSG00000032261.16, intron 1 of 3) protein_coding-intron (ENSMUSG00000032261.16, intron 1 of 3) 4185 ENSMUSG00000110950.1 ENSMUSG00000110950 ENSMUST00000213703 Gm39384 lincRNA Interval_27697 chr11 69541358 69542111 + 0 NA intron (ENSMUSG00000005237.14, intron 2 of 13) protein_coding-intron (ENSMUSG00000005237.14, intron 1 of 84) 18471 ENSMUSG00000003934.5 ENSMUSG00000003934 ENSMUST00000004036 Efnb3 protein_coding Interval_76773 chr17 83936282 83937649 + 0 NA Intergenic Intergenic -10623 ENSMUSG00000088193.1 ENSMUSG00000088193 ENSMUST00000157568 Gm23905 rRNA Interval_31289 chr11 99369271 99370409 + 0 NA intron (ENSMUSG00000055937.1, intron 5 of 7) protein_coding-intron (ENSMUSG00000055937.1, intron 5 of 7) 5063 ENSMUSG00000055937.1 ENSMUSG00000055937 ENSMUST00000006963 Krt28 protein_coding Interval_117165 chr4 120172189 120172500 + 0 NA Intergenic Intergenic 11138 ENSMUSG00000028635.7 ENSMUSG00000028635 ENSMUST00000030384 Edn2 protein_coding Interval_74128 chr17 46666887 46668144 + 0 NA TTS (ENSMUSG00000023971.9) protein_coding-TTS (ENSMUSG00000023971.9) 6755 ENSMUSG00000023971.9 ENSMUSG00000023971 ENSMUST00000232697 Rrp36 protein_coding Interval_157267 chr8 68820877 68821993 + 0 NA intron (ENSMUSG00000031864.16, intron 1 of 4) protein_coding-intron (ENSMUSG00000031864.16, intron 15 of 16) -7422 ENSMUSG00000031864.16 ENSMUSG00000031864 ENSMUST00000212064 Ints10 protein_coding Interval_159522 chr8 95215655 95215854 + 0 NA Intergenic Intergenic 77444 ENSMUSG00000110475.1 ENSMUSG00000110475 ENSMUST00000212925 Gm31036 antisense Interval_134892 chr6 33270676 33271044 + 0 NA intron (ENSMUSG00000029763.17, intron 2 of 5) protein_coding-intron (ENSMUSG00000029763.17, intron 2 of 17) -22761 ENSMUSG00000082217.1 ENSMUSG00000082217 ENSMUST00000122048 Gm1401 processed_pseudogene Interval_153061 chr7 141122346 141123721 + 0 NA intron (ENSMUSG00000025495.15, intron 1 of 9) protein_coding-intron (ENSMUSG00000025495.15, intron 1 of 9) -9417 ENSMUSG00000025495.15 ENSMUSG00000025495 ENSMUST00000209928 Ptdss2 protein_coding Interval_40921 chr12 109911524 109912052 + 0 NA promoter-TSS (ENSMUSG00000112940.1) lincRNA-promoter-TSS (ENSMUSG00000112940.1) 3 ENSMUSG00000112940.1 ENSMUSG00000112940 ENSMUST00000223541 4930511J24Rik lincRNA Interval_160535 chr8 110485603 110486745 + 0 NA intron (ENSMUSG00000059854.8, intron 25 of 25) protein_coding-intron (ENSMUSG00000059854.8, intron 25 of 86) -12678 ENSMUSG00000093112.2 ENSMUSG00000093112 ENSMUST00000175371 Gm22701 misc_RNA Interval_68275 chr16 72071974 72072442 + 0 NA Intergenic Intergenic 162119 ENSMUSG00000116769.1 ENSMUSG00000116769 ENSMUST00000231977 8030451O07Rik lincRNA Interval_26332 chr11 56325403 56326085 + 0 NA Intergenic Intergenic -62504 ENSMUSG00000065635.1 ENSMUSG00000065635 ENSMUST00000083701 Gm24253 snoRNA Interval_162303 chr8 126928208 126930326 + 0 NA Intergenic Intergenic 15713 ENSMUSG00000065637.1 ENSMUSG00000065637 ENSMUST00000083703 Gm26397 snoRNA Interval_61527 chr15 82182161 82182501 + 0 NA intron (ENSMUSG00000022463.8, intron 11 of 20) protein_coding-intron (ENSMUSG00000022463.8, intron 10 of 18) -3185 ENSMUSG00000116226.1 ENSMUSG00000116226 ENSMUST00000229390 Gm49502 TEC Interval_87426 chr19 49994126 49994558 + 0 NA Intergenic Intergenic 36393 ENSMUSG00000062083.1 ENSMUSG00000062083 ENSMUST00000071866 Rpl13a-ps1 processed_pseudogene Interval_115533 chr4 100317752 100318194 + 0 NA intron (ENSMUSG00000035305.5, intron 2 of 8) protein_coding-intron (ENSMUSG00000035305.5, intron 2 of 8) 44086 ENSMUSG00000080967.1 ENSMUSG00000080967 ENSMUST00000121588 Gm12706 processed_pseudogene Interval_169733 chr9 100759991 100760230 + 0 NA intron (ENSMUSG00000037286.15, intron 5 of 8) protein_coding-intron (ENSMUSG00000037286.15, intron 5 of 8) 56897 ENSMUSG00000104272.1 ENSMUSG00000104272 ENSMUST00000195122 Gm38297 TEC Interval_12781 chr10 5309765 5310719 + 0 NA intron (ENSMUSG00000096054.3, intron 45 of 145) protein_coding-intron (ENSMUSG00000096054.3, intron 45 of 145) -46931 ENSMUSG00000094906.1 ENSMUSG00000094906 ENSMUST00000104408 Gm23573 snRNA Interval_142555 chr6 143238186 143238495 + 0 NA Intergenic Intergenic -7553 ENSMUSG00000072679.10 ENSMUSG00000072679 ENSMUST00000160951 D6Ertd474e lincRNA Interval_91003 chr2 34109936 34110940 + 0 NA intron (ENSMUSG00000103413.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000103413.1, intron 1 of 1) 1006 ENSMUSG00000103413.1 ENSMUSG00000103413 ENSMUST00000147871 Gm38389 lincRNA Interval_10529 chr1 171501667 171504094 + 0 NA promoter-TSS (ENSMUSG00000060244.1) protein_coding-promoter-TSS (ENSMUSG00000060244.1) 283 ENSMUSG00000094668.1 ENSMUSG00000094668 ENSMUST00000083099 Gm24871 snRNA Interval_41507 chr12 115484832 115485057 + 0 NA Intergenic Intergenic 8907 ENSMUSG00000105242.1 ENSMUSG00000105242 ENSMUST00000196892 Gm9236 processed_pseudogene Interval_99926 chr2 165845198 165846352 + 0 NA TTS (ENSMUSG00000039671.18) protein_coding-TTS (ENSMUSG00000039671.18) -11909 ENSMUSG00000085274.1 ENSMUSG00000085274 ENSMUST00000155786 BC046401 processed_transcript Interval_138499 chr6 88752403 88753100 + 0 NA intron (ENSMUSG00000033174.17, intron 2 of 6) protein_coding-intron (ENSMUSG00000033174.17, intron 2 of 7) 10024 ENSMUSG00000107835.1 ENSMUSG00000107835 ENSMUST00000204286 Gm43999 TEC Interval_11686 chr1 184674932 184676127 + 0 NA Intergenic Intergenic -19505 ENSMUSG00000103314.1 ENSMUSG00000103314 ENSMUST00000195144 Gm38358 processed_pseudogene Interval_79166 chr18 25228821 25229345 + 0 NA intron (ENSMUSG00000033632.16, intron 6 of 11) protein_coding-intron (ENSMUSG00000033632.16, intron 5 of 9) 60063 ENSMUSG00000033632.16 ENSMUSG00000033632 ENSMUST00000100131 AW554918 protein_coding Interval_133510 chr6 6056871 6057334 + 0 NA intron (ENSMUSG00000015112.15, intron 14 of 17) protein_coding-intron (ENSMUSG00000015112.15, intron 14 of 17) -79709 ENSMUSG00000085416.1 ENSMUSG00000085416 ENSMUST00000130004 1700019G24Rik antisense Interval_122934 chr5 27516989 27517202 + 0 NA intron (ENSMUSG00000061576.15, intron 5 of 25) protein_coding-intron (ENSMUSG00000061576.15, intron 5 of 25) -15733 ENSMUSG00000048703.9 ENSMUSG00000048703 ENSMUST00000124535 Speer4b protein_coding Interval_169809 chr9 102044775 102045592 + 0 NA intron (ENSMUSG00000032537.15, intron 4 of 4) protein_coding-intron (ENSMUSG00000032537.15, intron 4 of 15) 11374 ENSMUSG00000104041.1 ENSMUSG00000104041 ENSMUST00000194763 Gm37562 TEC Interval_57705 chr15 16244819 16245051 + 0 NA Intergenic Intergenic -36982 ENSMUSG00000115434.1 ENSMUSG00000115434 ENSMUST00000227564 Gm6479 processed_pseudogene Interval_22447 chr11 10218687 10219021 + 0 NA Intergenic Intergenic -20483 ENSMUSG00000082312.1 ENSMUSG00000082312 ENSMUST00000117538 Gm11996 processed_pseudogene Interval_159451 chr8 94814588 94814788 + 0 NA Intergenic Intergenic 4235 ENSMUSG00000031780.2 ENSMUSG00000031780 ENSMUST00000034232 Ccl17 protein_coding Interval_119875 chr4 140633682 140633882 + 0 NA intron (ENSMUSG00000040964.16, intron 1 of 27) protein_coding-intron (ENSMUSG00000040964.16, intron 1 of 27) -16717 ENSMUSG00000040964.16 ENSMUSG00000040964 ENSMUST00000154979 Arhgef10l protein_coding Interval_76609 chr17 82395825 82396041 + 0 NA Intergenic Intergenic 14886 ENSMUSG00000117438.1 ENSMUSG00000117438 ENSMUST00000234808 Rpsa-ps7 processed_pseudogene Interval_79778 chr18 35072092 35072578 + 0 NA intron (ENSMUSG00000117727.1, intron 1 of 1) processed_transcript-intron (ENSMUSG00000118380.1, intron 4 of 5) 15288 ENSMUSG00000117727.1 ENSMUSG00000117727 ENSMUST00000238134 Gm3587 lincRNA Interval_104079 chr3 58377522 58378570 + 0 NA Intergenic Intergenic -26655 ENSMUSG00000105154.1 ENSMUSG00000105154 ENSMUST00000196189 Gm20128 processed_pseudogene Interval_74002 chr17 45961058 45962400 + 0 NA promoter-TSS (ENSMUSG00000117040.1) lincRNA-promoter-TSS (ENSMUSG00000117040.1) -130 ENSMUSG00000117040.1 ENSMUSG00000117040 ENSMUST00000233512 Gm49805 lincRNA Interval_124477 chr5 48617314 48617914 + 0 NA intron (ENSMUSG00000029088.16, intron 1 of 8) protein_coding-intron (ENSMUSG00000029088.16, intron 1 of 8) 9539 ENSMUSG00000105574.1 ENSMUSG00000105574 ENSMUST00000197775 Gm43648 TEC Interval_141575 chr6 129532686 129534231 + 0 NA promoter-TSS (ENSMUSG00000097675.2) processed_transcript-promoter-TSS (ENSMUSG00000097675.2) 82 ENSMUSG00000030161.8 ENSMUSG00000030161 ENSMUST00000204639 Gabarapl1 protein_coding Interval_98420 chr2 152237745 152238616 + 0 NA intron (ENSMUSG00000074698.10, intron 1 of 3) protein_coding-intron (ENSMUSG00000074698.10, intron 1 of 12) 11267 ENSMUSG00000074698.10 ENSMUSG00000074698 ENSMUST00000141597 Csnk2a1 protein_coding Interval_84318 chr19 10055994 10056467 + 0 NA promoter-TSS (ENSMUSG00000024664.5) protein_coding-promoter-TSS (ENSMUSG00000024664.5) 14498 ENSMUSG00000024664.5 ENSMUSG00000024664 ENSMUST00000237226 Fads3 protein_coding Interval_116771 chr4 117210193 117211635 + 0 NA promoter-TSS (ENSMUSG00000096280.1) snRNA-promoter-TSS (ENSMUSG00000096280.1) 70 ENSMUSG00000096280.1 ENSMUSG00000096280 ENSMUST00000179427 Gm23287 snRNA Interval_21503 chr10 128970681 128970851 + 0 NA promoter-TSS (ENSMUSG00000097691.1) lincRNA-promoter-TSS (ENSMUSG00000097691.1) -431 ENSMUSG00000097691.1 ENSMUSG00000097691 ENSMUST00000181142 9030616G12Rik lincRNA Interval_96746 chr2 127667497 127668286 + 0 NA Intergenic Intergenic -9779 ENSMUSG00000089264.1 ENSMUSG00000089264 ENSMUST00000158639 Gm22889 snoRNA Interval_81100 chr18 53888544 53888836 + 0 NA intron (ENSMUSG00000073563.3, intron 1 of 12) protein_coding-intron (ENSMUSG00000073563.3, intron 1 of 12) 26502 ENSMUSG00000073563.3 ENSMUSG00000073563 ENSMUST00000236399 Csnk1g3 protein_coding Interval_170457 chr9 108110107 108110694 + 0 NA promoter-TSS (ENSMUSG00000032589.14) protein_coding-promoter-TSS (ENSMUSG00000032589.14) 13 ENSMUSG00000032589.14 ENSMUSG00000032589 ENSMUST00000124763 Bsn protein_coding Interval_152100 chr7 129316725 129318651 + 0 NA intron (ENSMUSG00000070366.5, intron 3 of 4) protein_coding-intron (ENSMUSG00000070366.5, intron 3 of 6) 60641 ENSMUSG00000070366.5 ENSMUSG00000070366 ENSMUST00000205896 Plpp4 protein_coding Interval_157486 chr8 70672510 70673960 + 0 NA promoter-TSS (ENSMUSG00000031848.15) protein_coding-promoter-TSS (ENSMUSG00000031848.15) -197 ENSMUSG00000031848.15 ENSMUSG00000031848 ENSMUST00000153689 Lsm4 protein_coding Interval_149575 chr7 99764618 99764837 + 0 NA intron (ENSMUSG00000073997.3, intron 1 of 1) protein_coding-intron (ENSMUSG00000073997.3, intron 1 of 1) 1220 ENSMUSG00000073997.3 ENSMUSG00000073997 ENSMUST00000098263 Olfr521 protein_coding Interval_14929 chr10 41228125 41228837 + 0 NA intron (ENSMUSG00000038417.4, intron 19 of 22) protein_coding-intron (ENSMUSG00000038417.4, intron 19 of 22) 12436 ENSMUSG00000093933.1 ENSMUSG00000093933 ENSMUST00000104332 Gm25526 snoRNA Interval_168542 chr9 83412982 83413394 + 0 NA intron (ENSMUSG00000032258.15, intron 2 of 8) protein_coding-intron (ENSMUSG00000032258.15, intron 3 of 7) 3528 ENSMUSG00000058838.9 ENSMUSG00000058838 ENSMUST00000078766 Rps27a-ps2 processed_pseudogene Interval_100665 chr2 170893187 170893628 + 0 NA Intergenic Intergenic 61417 ENSMUSG00000080955.1 ENSMUSG00000080955 ENSMUST00000117955 Gm14263 processed_pseudogene Interval_76725 chr17 83705536 83707179 + 0 NA intron (ENSMUSG00000055817.18, intron 1 of 16) protein_coding-intron (ENSMUSG00000055817.18, intron 1 of 16) -22807 ENSMUSG00000055817.18 ENSMUSG00000055817 ENSMUST00000175920 Mta3 protein_coding Interval_52358 chr14 45383083 45383347 + 0 NA TTS (ENSMUSG00000037722.8) protein_coding-TTS (ENSMUSG00000037722.8) 228 ENSMUSG00000037722.8 ENSMUSG00000037722 ENSMUST00000226590 Gnpnat1 protein_coding Interval_168053 chr9 75658520 75658745 + 0 NA intron (ENSMUSG00000032181.7, intron 10 of 11) protein_coding-intron (ENSMUSG00000032181.7, intron 10 of 11) -8020 ENSMUSG00000102176.1 ENSMUSG00000102176 ENSMUST00000194973 Gm37871 TEC Interval_127725 chr5 107109480 107110905 + 0 NA intron (ENSMUSG00000029287.14, intron 14 of 14) protein_coding-intron (ENSMUSG00000029287.14, intron 16 of 16) 25496 ENSMUSG00000106643.1 ENSMUSG00000106643 ENSMUST00000199780 Gm43422 TEC Interval_115777 chr4 103875759 103876349 + 0 NA intron (ENSMUSG00000028519.16, intron 1 of 3) protein_coding-intron (ENSMUSG00000028519.16, intron 1 of 9) 63487 ENSMUSG00000080913.1 ENSMUSG00000080913 ENSMUST00000118859 Gm12719 processed_pseudogene Interval_103854 chr3 53673172 53674433 + 0 NA Intergenic Intergenic -6474 ENSMUSG00000105840.1 ENSMUSG00000105840 ENSMUST00000198253 Gm6073 processed_pseudogene Interval_52353 chr14 45372316 45372879 + 0 NA intron (ENSMUSG00000053205.9, intron 1 of 1) protein_coding-intron (ENSMUSG00000053205.9, intron 11 of 11) 10846 ENSMUSG00000037722.8 ENSMUSG00000037722 ENSMUST00000226590 Gnpnat1 protein_coding Interval_18938 chr10 93263767 93264056 + 0 NA intron (ENSMUSG00000020015.10, intron 3 of 3) protein_coding-intron (ENSMUSG00000008398.16, intron 3 of 4) 24888 ENSMUSG00000020015.10 ENSMUSG00000020015 ENSMUST00000216729 Cdk17 protein_coding Interval_15354 chr10 45048431 45048971 + 0 NA Intergenic Intergenic -18502 ENSMUSG00000019849.11 ENSMUSG00000019849 ENSMUST00000099858 Prep protein_coding Interval_60242 chr15 68957979 68958252 + 0 NA intron (ENSMUSG00000022332.8, intron 1 of 4) protein_coding-intron (ENSMUSG00000022332.8, intron 1 of 8) -1416 ENSMUSG00000116092.1 ENSMUSG00000116092 ENSMUST00000230699 Gm49422 sense_intronic Interval_122585 chr5 23982207 23982702 + 0 NA exon (ENSMUSG00000028995.14, exon 1 of 1) protein_coding-exon (ENSMUSG00000028995.14, exon 1 of 1) 2575 ENSMUSG00000028995.14 ENSMUSG00000028995 ENSMUST00000147179 Fam126a protein_coding Interval_174597 chrX 159595740 159595933 + 0 NA Intergenic Intergenic 7371 ENSMUSG00000083906.1 ENSMUSG00000083906 ENSMUST00000119345 Gm15186 processed_pseudogene Interval_125767 chr5 73993278 73994180 + 0 NA Intergenic Intergenic -20486 ENSMUSG00000087250.2 ENSMUSG00000087250 ENSMUST00000129275 Usp46os1 antisense Interval_136101 chr6 50961819 50962396 + 0 NA Intergenic Intergenic -5161 ENSMUSG00000108153.1 ENSMUSG00000108153 ENSMUST00000203677 Gm44402 processed_pseudogene Interval_20270 chr10 116550298 116550940 + 0 NA intron (ENSMUSG00000020166.15, intron 1 of 5) protein_coding-intron (ENSMUSG00000020166.15, intron 1 of 4) -16163 ENSMUSG00000112881.1 ENSMUSG00000112881 ENSMUST00000220056 Gm49344 TEC Interval_134826 chr6 31898344 31899256 + 0 NA intron (ENSMUSG00000087379.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000087379.1, intron 1 of 2) 112125 ENSMUSG00000087379.1 ENSMUSG00000087379 ENSMUST00000153328 Gm13849 lincRNA Interval_76498 chr17 80603234 80603583 + 0 NA intron (ENSMUSG00000024242.15, intron 12 of 18) protein_coding-intron (ENSMUSG00000024242.15, intron 27 of 33) 21578 ENSMUSG00000024242.15 ENSMUSG00000024242 ENSMUST00000234486 Map4k3 protein_coding Interval_46604 chr13 67519114 67519374 + 0 NA intron (ENSMUSG00000097333.7, intron 3 of 4) protein_coding-intron (ENSMUSG00000097565.1, intron 3 of 5) 6907 ENSMUSG00000097565.1 ENSMUSG00000097565 ENSMUST00000167914 Gm26965 protein_coding Interval_63402 chr15 100824571 100825693 + 0 NA TTS (ENSMUSG00000115912.1) lincRNA-TTS (ENSMUSG00000115912.1) 7259 ENSMUSG00000115912.1 ENSMUSG00000115912 ENSMUST00000230694 Gm35569 lincRNA Interval_28997 chr11 79803928 79805319 + 0 NA intron (ENSMUSG00000086474.2, intron 3 of 4) lincRNA-intron (ENSMUSG00000086474.2, intron 3 of 4) 549 ENSMUSG00000086474.2 ENSMUSG00000086474 ENSMUST00000162268 9130204K15Rik lincRNA Interval_34953 chr12 15114668 15116689 + 0 NA intron (ENSMUSG00000113285.1, intron 8 of 10) transcribed_processed_pseudogene-intron (ENSMUSG00000113285.1, intron 8 of 10) 13236 ENSMUSG00000114124.1 ENSMUSG00000114124 ENSMUST00000222939 Gm19084 processed_pseudogene Interval_116174 chr4 108379880 108380746 + 0 NA intron (ENSMUSG00000059816.5, intron 1 of 2) protein_coding-intron (ENSMUSG00000059816.5, intron 1 of 2) 3036 ENSMUSG00000059816.5 ENSMUSG00000059816 ENSMUST00000053157 Shisal2a protein_coding Interval_113584 chr4 56856090 56857219 + 0 NA intron (ENSMUSG00000038816.14, intron 1 of 11) protein_coding-intron (ENSMUSG00000038816.14, intron 1 of 18) -18070 ENSMUSG00000038816.14 ENSMUSG00000038816 ENSMUST00000132764 Ctnnal1 protein_coding Interval_128114 chr5 111054053 111054250 + 0 NA intron (ENSMUSG00000033209.17, intron 2 of 22) protein_coding-intron (ENSMUSG00000033209.17, intron 2 of 23) 25599 ENSMUSG00000105890.1 ENSMUSG00000105890 ENSMUST00000197083 Gm42780 TEC Interval_169451 chr9 97458669 97458879 + 0 NA intron (ENSMUSG00000032452.12, intron 12 of 16) protein_coding-intron (ENSMUSG00000032452.12, intron 12 of 17) -19147 ENSMUSG00000077208.1 ENSMUSG00000077208 ENSMUST00000104020 Gm25607 snoRNA Interval_103262 chr3 37631121 37631445 + 0 NA Intergenic Intergenic -8664 ENSMUSG00000037211.12 ENSMUSG00000037211 ENSMUST00000108107 Spry1 protein_coding Interval_43966 chr13 38506442 38506746 + 0 NA promoter-TSS (ENSMUSG00000038991.17) protein_coding-promoter-TSS (ENSMUSG00000038991.17) -7502 ENSMUSG00000114399.1 ENSMUSG00000114399 ENSMUST00000225109 Gm47994 processed_pseudogene Interval_106514 chr3 96807674 96808860 + 0 NA intron (ENSMUSG00000038304.14, intron 2 of 3) protein_coding-intron (ENSMUSG00000038304.14, intron 2 of 4) 21084 ENSMUSG00000038304.14 ENSMUSG00000038304 ENSMUST00000047702 Cd160 protein_coding Interval_103768 chr3 52510153 52511680 + 0 NA Intergenic Intergenic -6048 ENSMUSG00000103965.1 ENSMUSG00000103965 ENSMUST00000195035 Gm30173 lincRNA Interval_98272 chr2 150701467 150703767 + 0 NA Intergenic Intergenic 4259 ENSMUSG00000086563.1 ENSMUSG00000086563 ENSMUST00000147128 Platr15 lincRNA Interval_32940 chr11 113262084 113262620 + 0 NA intron (ENSMUSG00000041654.15, intron 7 of 9) protein_coding-intron (ENSMUSG00000041654.15, intron 8 of 10) -52683 ENSMUSG00000085421.1 ENSMUSG00000085421 ENSMUST00000130373 4732490B19Rik lincRNA Interval_112375 chr4 40910478 40910680 + 0 NA Intergenic Intergenic 2776 ENSMUSG00000081309.3 ENSMUSG00000081309 ENSMUST00000117674 Gm12397 processed_pseudogene Interval_136313 chr6 52941464 52942159 + 0 NA intron (ENSMUSG00000063568.11, intron 1 of 4) protein_coding-intron (ENSMUSG00000063568.11, intron 1 of 4) -32191 ENSMUSG00000063568.11 ENSMUSG00000063568 ENSMUST00000074541 Jazf1 protein_coding Interval_134428 chr6 28585599 28585858 + 0 NA intron (ENSMUSG00000001424.14, intron 1 of 4) protein_coding-intron (ENSMUSG00000001424.14, intron 10 of 23) 17656 ENSMUSG00000103132.1 ENSMUSG00000103132 ENSMUST00000194736 Gm37978 TEC Interval_157670 chr8 72194443 72194949 + 0 NA intron (ENSMUSG00000062007.13, intron 1 of 4) protein_coding-intron (ENSMUSG00000062007.13, intron 2 of 5) 1253 ENSMUSG00000062007.13 ENSMUSG00000062007 ENSMUST00000165324 Hsh2d protein_coding Interval_5009 chr1 84176802 84177537 + 0 NA intron (ENSMUSG00000045658.16, intron 1 of 2) protein_coding-intron (ENSMUSG00000045658.16, intron 1 of 2) 8981 ENSMUSG00000101934.1 ENSMUSG00000101934 ENSMUST00000189162 Gm18304 processed_pseudogene Interval_84421 chr19 10791678 10791909 + 0 NA intron (ENSMUSG00000024670.17, intron 8 of 11) protein_coding-intron (ENSMUSG00000024670.17, intron 5 of 8) 9878 ENSMUSG00000067577.8 ENSMUSG00000067577 ENSMUST00000186052 A430093F15Rik processed_transcript Interval_167786 chr9 72699463 72700694 + 0 NA intron (ENSMUSG00000032216.15, intron 1 of 20) protein_coding-intron (ENSMUSG00000032216.15, intron 6 of 28) 8529 ENSMUSG00000102573.1 ENSMUSG00000102573 ENSMUST00000192735 Gm7265 TEC Interval_170778 chr9 110697171 110697886 + 0 NA intron (ENSMUSG00000019659.8, intron 2 of 2) protein_coding-intron (ENSMUSG00000019659.8, intron 2 of 6) -12483 ENSMUSG00000019659.8 ENSMUSG00000019659 ENSMUST00000196542 Ccdc12 protein_coding Interval_77696 chr17 94399373 94399600 + 0 NA Intergenic Intergenic -70623 ENSMUSG00000077433.1 ENSMUSG00000077433 ENSMUST00000104245 Gm22593 snRNA Interval_104969 chr3 79403868 79404285 + 0 NA intron (ENSMUSG00000091685.6, intron 1 of 3) protein_coding-intron (ENSMUSG00000091685.6, intron 1 of 4) 58697 ENSMUSG00000091685.6 ENSMUSG00000091685 ENSMUST00000199658 Gm17359 protein_coding Interval_128452 chr5 113382416 113383303 + 0 NA Intergenic Intergenic 25565 ENSMUSG00000053873.1 ENSMUSG00000053873 ENSMUST00000066573 Aym1 protein_coding Interval_23334 chr11 21500028 21500240 + 0 NA exon (ENSMUSG00000078962.4, exon 5 of 9) lincRNA-exon (ENSMUSG00000078962.4, exon 5 of 9) -6179 ENSMUSG00000082040.1 ENSMUSG00000082040 ENSMUST00000118536 Gm12046 processed_pseudogene Interval_65266 chr16 21120437 21120662 + 0 NA Intergenic Intergenic -1281 ENSMUSG00000116731.1 ENSMUSG00000116731 ENSMUST00000232109 Gm18771 processed_pseudogene Interval_48013 chr13 95215546 95216361 + 0 NA intron (ENSMUSG00000021684.17, intron 1 of 12) protein_coding-intron (ENSMUSG00000021684.17, intron 1 of 20) 6860 ENSMUSG00000021684.17 ENSMUSG00000021684 ENSMUST00000162716 Pde8b protein_coding Interval_69185 chr16 91195759 91197287 + 0 NA Intergenic Intergenic -21189 ENSMUSG00000116713.1 ENSMUSG00000116713 ENSMUST00000231233 Gm49613 processed_pseudogene Interval_6574 chr1 117354338 117355037 + 0 NA Intergenic Intergenic 38845 ENSMUSG00000101154.1 ENSMUSG00000101154 ENSMUST00000189740 Gm17777 processed_pseudogene Interval_67524 chr16 50293615 50294101 + 0 NA intron (ENSMUSG00000022641.15, intron 3 of 16) protein_coding-intron (ENSMUSG00000022641.15, intron 3 of 15) 138451 ENSMUSG00000022641.15 ENSMUSG00000022641 ENSMUST00000130210 Bbx protein_coding Interval_78817 chr18 20782189 20782887 + 0 NA Intergenic Intergenic -36134 ENSMUSG00000056124.5 ENSMUSG00000056124 ENSMUST00000070080 B4galt6 protein_coding Interval_169506 chr9 98601189 98602240 + 0 NA promoter-TSS (ENSMUSG00000032459.9) protein_coding-promoter-TSS (ENSMUSG00000032459.9) -69 ENSMUSG00000032459.9 ENSMUSG00000032459 ENSMUST00000190150 Mrps22 protein_coding Interval_19122 chr10 94818749 94819818 + 0 NA intron (ENSMUSG00000074785.5, intron 21 of 30) protein_coding-intron (ENSMUSG00000074785.5, intron 21 of 30) 2372 ENSMUSG00000088608.1 ENSMUSG00000088608 ENSMUST00000157983 Gm24186 rRNA Interval_151868 chr7 127217630 127218005 + 0 NA promoter-TSS (ENSMUSG00000000486.13) protein_coding-promoter-TSS (ENSMUSG00000000486.13) 8918 ENSMUSG00000030672.12 ENSMUSG00000030672 ENSMUST00000139613 Mylpf protein_coding Interval_47449 chr13 84402788 84403057 + 0 NA Intergenic Intergenic -62809 ENSMUSG00000098245.1 ENSMUSG00000098245 ENSMUST00000182385 Gm26927 processed_pseudogene Interval_40481 chr12 105111427 105112878 + 0 NA Intergenic Intergenic -23044 ENSMUSG00000113051.1 ENSMUSG00000113051 ENSMUST00000222354 Gm47672 processed_pseudogene Interval_12010 chr1 188788369 188788986 + 0 NA intron (ENSMUSG00000026609.15, intron 48 of 70) protein_coding-intron (ENSMUSG00000026609.15, intron 48 of 70) 28201 ENSMUSG00000084550.1 ENSMUSG00000084550 ENSMUST00000122601 Gm25269 snRNA Interval_53004 chr14 53349080 53349876 + 0 NA Intergenic Intergenic -1550 ENSMUSG00000076822.2 ENSMUSG00000076822 ENSMUST00000103633 Trav16n TR_V_gene Interval_77147 chr17 86909694 86909932 + 0 NA Intergenic Intergenic -8596 ENSMUSG00000037689.6 ENSMUSG00000037689 ENSMUST00000202221 Tmem247 protein_coding Interval_9655 chr1 160767426 160768059 + 0 NA intron (ENSMUSG00000026721.16, intron 1 of 3) protein_coding-intron (ENSMUSG00000026721.16, intron 1 of 20) 12055 ENSMUSG00000104053.1 ENSMUSG00000104053 ENSMUST00000195297 Gm38126 TEC Interval_173666 chrX 101663427 101663715 + 0 NA intron (ENSMUSG00000034160.13, intron 8 of 22) protein_coding-intron (ENSMUSG00000034160.13, intron 7 of 21) 23431 ENSMUSG00000034160.13 ENSMUSG00000034160 ENSMUST00000147635 Ogt protein_coding Interval_8814 chr1 151360623 151361041 + 0 NA promoter-TSS (ENSMUSG00000023150.14) protein_coding-promoter-TSS (ENSMUSG00000023150.14) -415 ENSMUSG00000023150.14 ENSMUSG00000023150 ENSMUST00000190872 Ivns1abp protein_coding Interval_91504 chr2 39645200 39645918 + 0 NA Intergenic Intergenic 13412 ENSMUSG00000108203.1 ENSMUSG00000108203 ENSMUST00000205220 Gm43944 processed_pseudogene Interval_130813 chr5 130896126 130896386 + 0 NA TTS (ENSMUSG00000107207.1) TEC-TTS (ENSMUSG00000107207.1) 2357 ENSMUSG00000107207.1 ENSMUSG00000107207 ENSMUST00000201486 Gm42897 TEC Interval_85977 chr19 34521532 34522100 + 0 NA TTS (ENSMUSG00000024781.16) protein_coding-TTS (ENSMUSG00000024781.16) 5595 ENSMUSG00000024781.16 ENSMUSG00000024781 ENSMUST00000237513 Lipa protein_coding Interval_18461 chr10 86318940 86319963 + 0 NA intron (ENSMUSG00000020044.13, intron 1 of 2) protein_coding-intron (ENSMUSG00000020044.13, intron 1 of 4) 18897 ENSMUSG00000020044.13 ENSMUSG00000020044 ENSMUST00000132307 Timp3 protein_coding Interval_118149 chr4 129237367 129239531 + 0 NA intron (ENSMUSG00000050390.12, intron 1 of 3) protein_coding-intron (ENSMUSG00000050390.12, intron 1 of 6) -10969 ENSMUSG00000050390.12 ENSMUSG00000050390 ENSMUST00000146376 C77080 protein_coding Interval_156274 chr8 46813490 46813896 + 0 NA intron (ENSMUSG00000031627.9, intron 5 of 7) protein_coding-intron (ENSMUSG00000031627.9, intron 5 of 8) 6463 ENSMUSG00000031627.9 ENSMUSG00000031627 ENSMUST00000209820 Irf2 protein_coding Interval_40048 chr12 100857814 100858055 + 0 NA intron (ENSMUSG00000021185.16, intron 3 of 4) protein_coding-intron (ENSMUSG00000021185.16, intron 10 of 12) -4852 ENSMUSG00000113159.1 ENSMUSG00000113159 ENSMUST00000221802 Gm48771 TEC Interval_58753 chr15 37784182 37784593 + 0 NA intron (ENSMUSG00000051359.15, intron 1 of 2) protein_coding-intron (ENSMUSG00000051359.15, intron 1 of 6) -18986 ENSMUSG00000086313.1 ENSMUSG00000086313 ENSMUST00000156011 Gm15940 sense_intronic Interval_136452 chr6 54594871 54595776 + 0 NA TTS (ENSMUSG00000038074.16) protein_coding-TTS (ENSMUSG00000038074.16) 212 ENSMUSG00000005225.15 ENSMUSG00000005225 ENSMUST00000101385 Plekha8 protein_coding Interval_144924 chr7 28939566 28940389 + 0 NA intron (ENSMUSG00000109314.1, intron 1 of 1) protein_coding-intron (ENSMUSG00000054808.15, intron 1 of 20) 3551 ENSMUSG00000109314.1 ENSMUSG00000109314 ENSMUST00000208229 Gm44699 sense_intronic Interval_133195 chr5 150459603 150460380 + 0 NA promoter-TSS (ENSMUSG00000056602.12) protein_coding-promoter-TSS (ENSMUSG00000056602.12) 13209 ENSMUSG00000107262.1 ENSMUSG00000107262 ENSMUST00000201000 Gm18753 processed_pseudogene Interval_102038 chr3 15955145 15955435 + 0 NA intron (ENSMUSG00000078780.7, intron 3 of 4) protein_coding-intron (ENSMUSG00000078780.7, intron 3 of 3) -12457 ENSMUSG00000103769.1 ENSMUSG00000103769 ENSMUST00000194510 Gm7343 processed_pseudogene Interval_107680 chr3 110266601 110266876 + 0 NA Intergenic Intergenic 10734 ENSMUSG00000104944.1 ENSMUSG00000104944 ENSMUST00000198642 Gm43405 processed_pseudogene Interval_24533 chr11 34112266 34114055 + 0 NA Intergenic Intergenic -16315 ENSMUSG00000085684.2 ENSMUSG00000085684 ENSMUST00000224226 4930469K13Rik protein_coding Interval_547 chr1 7177620 7178255 + 0 NA exon (ENSMUSG00000048538.7, exon 1 of 1) processed_pseudogene-exon (ENSMUSG00000048538.7, exon 1 of 1) 198 ENSMUSG00000048538.7 ENSMUSG00000048538 ENSMUST00000029124 Gm9826 processed_pseudogene Interval_60788 chr15 76763752 76764092 + 0 NA intron (ENSMUSG00000033697.16, intron 2 of 2) protein_coding-intron (ENSMUSG00000033697.16, intron 2 of 11) -33774 ENSMUSG00000090429.3 ENSMUSG00000090429 ENSMUST00000165535 Gm17271 processed_pseudogene Interval_52018 chr14 34635180 34635593 + 0 NA Intergenic Intergenic -26321 ENSMUSG00000115575.1 ENSMUSG00000115575 ENSMUST00000227643 Gm49024 lincRNA Interval_115715 chr4 102973337 102973742 + 0 NA TTS (ENSMUSG00000028524.21) protein_coding-TTS (ENSMUSG00000028524.21) -5152 ENSMUSG00000028523.14 ENSMUSG00000028523 ENSMUST00000139883 Tctex1d1 protein_coding Interval_66455 chr16 33975478 33975779 + 0 NA exon (ENSMUSG00000061751.16, exon 60 of 60) protein_coding-exon (ENSMUSG00000061751.16, exon 60 of 60) -8625 ENSMUSG00000022814.6 ENSMUSG00000022814 ENSMUST00000131990 Umps protein_coding Interval_47317 chr13 81259691 81260076 + 0 NA intron (ENSMUSG00000069170.14, intron 3 of 7) protein_coding-intron (ENSMUSG00000069170.14, intron 85 of 89) -19099 ENSMUSG00000114939.1 ENSMUSG00000114939 ENSMUST00000225657 Gm48566 TEC Interval_72876 chr17 32856476 32857305 + 0 NA promoter-TSS (ENSMUSG00000117373.1) transcribed_unprocessed_pseudogene-promoter-TSS (ENSMUSG00000117373.1) -3870 ENSMUSG00000117468.1 ENSMUSG00000117468 ENSMUST00000234921 Gm7059 processed_pseudogene Interval_157482 chr8 70646964 70650629 + 0 NA exon (ENSMUSG00000056204.8, exon 5 of 5) protein_coding-exon (ENSMUSG00000056204.8, exon 5 of 5) 10855 ENSMUSG00000056204.8 ENSMUSG00000056204 ENSMUST00000210786 Pgpep1 protein_coding Interval_146508 chr7 46503893 46504570 + 0 NA intron (ENSMUSG00000030839.12, intron 3 of 3) protein_coding-intron (ENSMUSG00000030839.12, intron 10 of 10) 8549 ENSMUSG00000110316.1 ENSMUSG00000110316 ENSMUST00000211086 Gm45311 sense_intronic Interval_62558 chr15 94628604 94629717 + 0 NA promoter-TSS (ENSMUSG00000063296.5) protein_coding-promoter-TSS (ENSMUSG00000063296.5) -72 ENSMUSG00000063296.5 ENSMUSG00000063296 ENSMUST00000080141 Tmem117 protein_coding Interval_116585 chr4 115891530 115891736 + 0 NA intron (ENSMUSG00000034185.9, intron 1 of 3) protein_coding-intron (ENSMUSG00000034185.9, intron 1 of 1) 967 ENSMUSG00000034185.9 ENSMUSG00000034185 ENSMUST00000165938 6430628N08Rik protein_coding Interval_164851 chr9 42456728 42456967 + 0 NA intron (ENSMUSG00000037287.15, intron 1 of 2) protein_coding-intron (ENSMUSG00000037287.15, intron 1 of 7) 13995 ENSMUSG00000104589.1 ENSMUSG00000104589 ENSMUST00000196448 Gm44311 miRNA Interval_1869 chr1 34211005 34212304 + 0 NA intron (ENSMUSG00000026131.20, intron 32 of 83) protein_coding-intron (ENSMUSG00000026131.20, intron 47 of 97) -33208 ENSMUSG00000096992.3 ENSMUSG00000096992 ENSMUST00000187268 Gm26788 processed_transcript Interval_109138 chr3 136651465 136652099 + 0 NA Intergenic Intergenic -49429 ENSMUSG00000106596.1 ENSMUSG00000106596 ENSMUST00000200507 Gm42822 TEC Interval_152288 chr7 131404267 131404890 + 0 NA intron (ENSMUSG00000040167.16, intron 1 of 3) protein_coding-intron (ENSMUSG00000040167.16, intron 1 of 3) -1782 ENSMUSG00000108910.1 ENSMUSG00000108910 ENSMUST00000207838 Gm44625 TEC Interval_5240 chr1 86652855 86653824 + 0 NA Intergenic Intergenic 15138 ENSMUSG00000103609.1 ENSMUSG00000103609 ENSMUST00000192517 Gm37022 TEC Interval_73979 chr17 45821516 45824293 + 0 NA promoter-TSS (ENSMUSG00000117139.1) lincRNA-promoter-TSS (ENSMUSG00000117139.1) -581 ENSMUSG00000117139.1 ENSMUSG00000117139 ENSMUST00000233237 Gm35692 lincRNA Interval_114421 chr4 75931195 75932050 + 0 NA Intergenic Intergenic -28467 ENSMUSG00000081844.1 ENSMUSG00000081844 ENSMUST00000117371 Gm11241 processed_pseudogene Interval_5763 chr1 91564173 91564875 + 0 NA Intergenic Intergenic 23792 ENSMUSG00000026311.16 ENSMUSG00000026311 ENSMUST00000188879 Asb1 protein_coding Interval_12744 chr10 4632376 4633174 + 0 NA intron (ENSMUSG00000019768.16, intron 1 of 8) protein_coding-intron (ENSMUSG00000019768.16, intron 1 of 8) 21182 ENSMUSG00000019768.16 ENSMUSG00000019768 ENSMUST00000137012 Esr1 protein_coding Interval_15005 chr10 41867704 41868211 + 0 NA intron (ENSMUSG00000038332.13, intron 1 of 9) protein_coding-intron (ENSMUSG00000038332.13, intron 1 of 9) -30416 ENSMUSG00000038332.13 ENSMUSG00000038332 ENSMUST00000214835 Sesn1 protein_coding Interval_110157 chr3 153849589 153850248 + 0 NA TTS (ENSMUSG00000086438.2) antisense-TTS (ENSMUSG00000086438.2) 2483 ENSMUSG00000086438.2 ENSMUSG00000086438 ENSMUST00000156292 Asb17os antisense Interval_38858 chr12 83445877 83446061 + 0 NA intron (ENSMUSG00000021221.15, intron 1 of 10) protein_coding-intron (ENSMUSG00000021221.15, intron 1 of 8) 41747 ENSMUSG00000021221.15 ENSMUSG00000021221 ENSMUST00000177801 Dpf3 protein_coding Interval_171701 chr9 120260535 120260812 + 0 NA promoter-TSS (ENSMUSG00000111498.1) lincRNA-promoter-TSS (ENSMUSG00000111498.1) 29 ENSMUSG00000111498.1 ENSMUSG00000111498 ENSMUST00000217104 Gm47059 lincRNA Interval_158864 chr8 87536426 87537526 + 0 NA Intergenic Intergenic -26877 ENSMUSG00000069971.5 ENSMUSG00000069971 ENSMUST00000093342 4933402J07Rik protein_coding Interval_121379 chr4 155360939 155362102 + 0 NA promoter-TSS (ENSMUSG00000029053.16) protein_coding-promoter-TSS (ENSMUSG00000029053.16) -16780 ENSMUSG00000029053.16 ENSMUSG00000029053 ENSMUST00000105624 Prkcz protein_coding Interval_158057 chr8 78457507 78457816 + 0 NA Intergenic Intergenic -21016 ENSMUSG00000031688.4 ENSMUSG00000031688 ENSMUST00000034115 Pou4f2 protein_coding Interval_19832 chr10 109919066 109919774 + 0 NA intron (ENSMUSG00000020181.18, intron 3 of 40) protein_coding-intron (ENSMUSG00000020181.18, intron 1 of 38) 118359 ENSMUSG00000102410.1 ENSMUSG00000102410 ENSMUST00000192526 Gm36935 TEC Interval_15673 chr10 53400021 53401024 + 0 NA Intergenic Intergenic -9360 ENSMUSG00000112132.1 ENSMUSG00000112132 ENSMUST00000218737 Gm36229 lincRNA Interval_124563 chr5 50932533 50932718 + 0 NA Intergenic Intergenic 11283 ENSMUSG00000105273.1 ENSMUSG00000105273 ENSMUST00000199087 Gm43015 processed_pseudogene Interval_118825 chr4 133918026 133918370 + 0 NA Intergenic Intergenic -31915 ENSMUSG00000003644.17 ENSMUSG00000003644 ENSMUST00000173961 Rps6ka1 protein_coding Interval_10875 chr1 176554019 176554772 + 0 NA Intergenic Intergenic -27122 ENSMUSG00000104021.1 ENSMUSG00000104021 ENSMUST00000194241 Gm36536 lincRNA Interval_84794 chr19 16788116 16789124 + 0 NA Intergenic Intergenic 8073 ENSMUSG00000046388.4 ENSMUSG00000046388 ENSMUST00000051080 Gm9806 pseudogene Interval_20859 chr10 121580891 121581664 + 0 NA intron (ENSMUSG00000020115.3, intron 1 of 3) protein_coding-intron (ENSMUSG00000020115.3, intron 2 of 20) 19536 ENSMUSG00000034667.8 ENSMUSG00000034667 ENSMUST00000217865 Xpot protein_coding Interval_165018 chr9 43959482 43959891 + 0 NA intron (ENSMUSG00000111758.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000111758.1, intron 1 of 2) 10485 ENSMUSG00000111758.1 ENSMUSG00000111758 ENSMUST00000217507 Gm30373 lincRNA Interval_92674 chr2 62407051 62409264 + 0 NA intron (ENSMUSG00000035000.8, intron 1 of 1) protein_coding-intron (ENSMUSG00000035000.8, intron 2 of 25) 32985 ENSMUSG00000087681.1 ENSMUSG00000087681 ENSMUST00000133596 Gm13565 lincRNA Interval_46714 chr13 69571059 69571446 + 0 NA intron (ENSMUSG00000021595.18, intron 2 of 2) protein_coding-intron (ENSMUSG00000021595.18, intron 1 of 3) 23577 ENSMUSG00000021594.11 ENSMUSG00000021594 ENSMUST00000059235 Srd5a1 protein_coding Interval_167295 chr9 67100916 67101101 + 0 NA Intergenic Intergenic -1292 ENSMUSG00000111825.1 ENSMUSG00000111825 ENSMUST00000213227 Gm10646 lincRNA Interval_156131 chr8 45009937 45010955 + 0 NA exon (ENSMUSG00000070047.14, exon 5 of 26) protein_coding-exon (ENSMUSG00000070047.14, exon 5 of 26) 11939 ENSMUSG00000097491.1 ENSMUSG00000097491 ENSMUST00000180753 Gm2366 antisense Interval_63025 chr15 98699237 98700048 + 0 NA Intergenic Intergenic -3451 ENSMUSG00000116482.1 ENSMUSG00000116482 ENSMUST00000230172 Gm34152 lincRNA Interval_141945 chr6 135706865 135707747 + 0 NA Intergenic Intergenic -25564 ENSMUSG00000086239.1 ENSMUSG00000086239 ENSMUST00000136027 Gm14329 lincRNA Interval_158867 chr8 87549640 87550184 + 0 NA Intergenic Intergenic -13941 ENSMUSG00000069971.5 ENSMUSG00000069971 ENSMUST00000093342 4933402J07Rik protein_coding Interval_147542 chr7 68199945 68200360 + 0 NA intron (ENSMUSG00000005533.10, intron 13 of 20) protein_coding-intron (ENSMUSG00000005533.10, intron 13 of 20) -11686 ENSMUSG00000005533.10 ENSMUSG00000005533 ENSMUST00000208871 Igf1r protein_coding Interval_44475 chr13 45189474 45190594 + 0 NA Intergenic Intergenic -2498 ENSMUSG00000098136.1 ENSMUSG00000098136 ENSMUST00000182830 Gm8513 processed_pseudogene Interval_84016 chr19 6121781 6122196 + 0 NA promoter-TSS (ENSMUSG00000024787.14) protein_coding-promoter-TSS (ENSMUSG00000024787.14) 1965 ENSMUSG00000024787.14 ENSMUSG00000024787 ENSMUST00000129076 Snx15 protein_coding Interval_160100 chr8 106424805 106425661 + 0 NA exon (ENSMUSG00000031907.9, exon 4 of 4) protein_coding-exon (ENSMUSG00000031907.9, exon 4 of 4) 9906 ENSMUSG00000031907.9 ENSMUSG00000031907 ENSMUST00000212874 Zfp90 protein_coding Interval_102477 chr3 27098474 27099032 + 0 NA intron (ENSMUSG00000027699.19, intron 23 of 23) protein_coding-intron (ENSMUSG00000027699.19, intron 23 of 23) -10229 ENSMUSG00000087742.1 ENSMUSG00000087742 ENSMUST00000157117 Gm25152 snoRNA Interval_135647 chr6 42309726 42310250 + 0 NA promoter-TSS (ENSMUSG00000029862.16) protein_coding-promoter-TSS (ENSMUSG00000029862.16) 14655 ENSMUSG00000029861.17 ENSMUSG00000029861 ENSMUST00000095974 Fam131b protein_coding Interval_52457 chr14 46639275 46639537 + 0 NA Intergenic Intergenic -1998 ENSMUSG00000115781.1 ENSMUSG00000115781 ENSMUST00000228523 Gm49319 processed_transcript Interval_10953 chr1 177509957 177510527 + 0 NA Intergenic Intergenic 42864 ENSMUSG00000103043.1 ENSMUSG00000103043 ENSMUST00000193447 Gm37306 lincRNA Interval_45427 chr13 55104956 55106028 + 0 NA promoter-TSS (ENSMUSG00000021481.11) protein_coding-promoter-TSS (ENSMUSG00000021481.11) -5238 ENSMUSG00000025878.16 ENSMUSG00000025878 ENSMUST00000124561 Uimc1 protein_coding Interval_37506 chr12 69427929 69428879 + 0 NA Intergenic Intergenic 47143 ENSMUSG00000113035.1 ENSMUSG00000113035 ENSMUST00000222980 5830428M24Rik processed_transcript Interval_112206 chr4 35669493 35669755 + 0 NA Intergenic Intergenic 175580 ENSMUSG00000045083.14 ENSMUSG00000045083 ENSMUST00000125128 Lingo2 protein_coding Interval_148772 chr7 86775243 86776319 + 0 NA promoter-TSS (ENSMUSG00000001773.14) protein_coding-promoter-TSS (ENSMUSG00000001773.14) -12825 ENSMUSG00000001773.14 ENSMUSG00000001773 ENSMUST00000209082 Folh1 protein_coding Interval_121487 chr4 156117246 156117471 + 0 NA TTS (ENSMUSG00000059939.13) protein_coding-TTS (ENSMUSG00000059939.13) 7360 ENSMUSG00000059939.13 ENSMUSG00000059939 ENSMUST00000141882 9430015G10Rik protein_coding Interval_86368 chr19 39085051 39085552 + 0 NA intron (ENSMUSG00000067231.4, intron 6 of 8) protein_coding-intron (ENSMUSG00000067231.4, intron 6 of 8) 24286 ENSMUSG00000067231.4 ENSMUSG00000067231 ENSMUST00000087236 Cyp2c65 protein_coding Interval_123191 chr5 30508463 30508736 + 0 NA intron (ENSMUSG00000053194.2, intron 3 of 6) protein_coding-intron (ENSMUSG00000053194.2, intron 3 of 6) 6085 ENSMUSG00000088327.1 ENSMUSG00000088327 ENSMUST00000157702 Gm25666 snRNA Interval_94307 chr2 87864871 87865059 + 0 NA Intergenic Intergenic -1527 ENSMUSG00000045225.4 ENSMUSG00000045225 ENSMUST00000051058 Olfr1152 protein_coding Interval_113154 chr4 48661376 48662059 + 0 NA intron (ENSMUSG00000028347.14, intron 9 of 9) protein_coding-intron (ENSMUSG00000028347.14, intron 9 of 9) -1797 ENSMUSG00000028348.7 ENSMUSG00000028348 ENSMUST00000030033 Cavin4 protein_coding Interval_66534 chr16 34935763 34936923 + 0 NA intron (ENSMUSG00000100593.1, intron 2 of 2) protein_coding-intron (ENSMUSG00000022836.11, intron 17 of 31) 2986 ENSMUSG00000100593.1 ENSMUSG00000100593 ENSMUST00000187558 1700119H24Rik antisense Interval_69726 chr16 95860848 95861701 + 0 NA intron (ENSMUSG00000117232.1, intron 1 of 3) lincRNA-intron (ENSMUSG00000117232.1, intron 2 of 3) -15504 ENSMUSG00000117232.1 ENSMUSG00000117232 ENSMUST00000233375 1600002D24Rik lincRNA Interval_131417 chr5 137045500 137047622 + 0 NA promoter-TSS (ENSMUSG00000004849.14) protein_coding-promoter-TSS (ENSMUSG00000004849.14) -8911 ENSMUSG00000004849.14 ENSMUSG00000004849 ENSMUST00000129356 Ap1s1 protein_coding Interval_44257 chr13 43122092 43123272 + 0 NA promoter-TSS (ENSMUSG00000054728.17) protein_coding-promoter-TSS (ENSMUSG00000054728.17) 3035 ENSMUSG00000087202.1 ENSMUSG00000087202 ENSMUST00000142286 Gm15813 antisense Interval_134438 chr6 28717547 28718346 + 0 NA intron (ENSMUSG00000001424.14, intron 4 of 4) protein_coding-intron (ENSMUSG00000001424.14, intron 13 of 23) -78517 ENSMUSG00000103899.1 ENSMUSG00000103899 ENSMUST00000194243 Gm37940 TEC Interval_8926 chr1 152313354 152313930 + 0 NA Intergenic Intergenic -21114 ENSMUSG00000103744.1 ENSMUSG00000103744 ENSMUST00000194334 Gm38238 TEC Interval_105960 chr3 90326424 90327936 + 0 NA intron (ENSMUSG00000042390.9, intron 2 of 7) protein_coding-intron (ENSMUSG00000042390.9, intron 1 of 9) -8215 ENSMUSG00000108689.1 ENSMUSG00000108689 ENSMUST00000199820 Gm45354 TEC Interval_159616 chr8 95806815 95808198 + 0 NA promoter-TSS (ENSMUSG00000036550.16) protein_coding-promoter-TSS (ENSMUSG00000036550.16) -75 ENSMUSG00000036550.16 ENSMUSG00000036550 ENSMUST00000212323 Cnot1 protein_coding Interval_63801 chr15 103522218 103523198 + 0 NA TTS (ENSMUSG00000022489.6) protein_coding-TTS (ENSMUSG00000022489.6) 7788 ENSMUSG00000022489.6 ENSMUSG00000022489 ENSMUST00000227925 Pde1b protein_coding Interval_93685 chr2 75831705 75832936 + 0 NA promoter-TSS (ENSMUSG00000042410.16) protein_coding-promoter-TSS (ENSMUSG00000042410.16) -9527 ENSMUSG00000082187.1 ENSMUSG00000082187 ENSMUST00000120947 Gm13670 processed_pseudogene Interval_107726 chr3 112090555 112092051 + 0 NA Intergenic Intergenic 107738 ENSMUSG00000089017.1 ENSMUSG00000089017 ENSMUST00000158392 Gm25519 snoRNA Interval_140248 chr6 115774027 115775730 + 0 NA promoter-TSS (ENSMUSG00000099163.1) miRNA-promoter-TSS (ENSMUSG00000099163.1) 340 ENSMUSG00000030319.8 ENSMUSG00000030319 ENSMUST00000075995 Cand2 protein_coding Interval_43926 chr13 38096485 38096679 + 0 NA Intergenic Intergenic 10380 ENSMUSG00000098481.1 ENSMUSG00000098481 ENSMUST00000184583 Gm27387 miRNA Interval_170974 chr9 113421802 113422247 + 0 NA exon (ENSMUSG00000111199.1, exon 2 of 2) lincRNA-exon (ENSMUSG00000111199.1, exon 2 of 2) 1913 ENSMUSG00000111199.1 ENSMUSG00000111199 ENSMUST00000216389 Gm47875 lincRNA Interval_168348 chr9 79240404 79240610 + 0 NA intron (ENSMUSG00000111638.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000111638.1, intron 1 of 1) 1887 ENSMUSG00000102020.1 ENSMUSG00000102020 ENSMUST00000190463 Gm28620 lincRNA Interval_162573 chr9 4794234 4796567 + 0 NA exon (ENSMUSG00000025892.16, exon 1 of 16) protein_coding-exon (ENSMUSG00000025892.16, exon 1 of 16) 119 ENSMUSG00000025892.16 ENSMUSG00000025892 ENSMUST00000163309 Gria4 protein_coding Interval_87727 chr19 55462062 55462251 + 0 NA intron (ENSMUSG00000024983.10, intron 5 of 7) protein_coding-intron (ENSMUSG00000024983.10, intron 5 of 7) 145829 ENSMUSG00000024983.10 ENSMUSG00000024983 ENSMUST00000224396 Vti1a protein_coding Interval_1342 chr1 20801171 20802417 + 0 NA Intergenic Intergenic 3139 ENSMUSG00000041859.10 ENSMUSG00000041859 ENSMUST00000190421 Mcm3 protein_coding Interval_78318 chr18 11943321 11943530 + 0 NA intron (ENSMUSG00000040957.15, intron 8 of 8) protein_coding-intron (ENSMUSG00000040957.15, intron 8 of 8) 30294 ENSMUSG00000117430.1 ENSMUSG00000117430 ENSMUST00000234828 Gm49968 TEC Interval_61204 chr15 79950569 79951994 + 0 NA intron (ENSMUSG00000053411.16, intron 1 of 5) protein_coding-intron (ENSMUSG00000053411.16, intron 1 of 5) -17451 ENSMUSG00000053411.16 ENSMUSG00000053411 ENSMUST00000177061 Cbx7 protein_coding Interval_54207 chr14 66273817 66274018 + 0 NA intron (ENSMUSG00000059456.13, intron 1 of 14) protein_coding-intron (ENSMUSG00000059456.13, intron 1 of 30) -23149 ENSMUSG00000022043.19 ENSMUSG00000022043 ENSMUST00000121006 Trim35 protein_coding Interval_102722 chr3 30592431 30593955 + 0 NA Intergenic Intergenic 2540 ENSMUSG00000102505.1 ENSMUSG00000102505 ENSMUST00000193960 1600017P15Rik TEC Interval_124826 chr5 55798763 55799104 + 0 NA Intergenic Intergenic -6046 ENSMUSG00000105678.1 ENSMUSG00000105678 ENSMUST00000195958 Gm43705 TEC Interval_4138 chr1 70320651 70321264 + 0 NA intron (ENSMUSG00000053153.14, intron 4 of 7) protein_coding-intron (ENSMUSG00000053153.14, intron 13 of 16) -8046 ENSMUSG00000103052.1 ENSMUSG00000103052 ENSMUST00000194431 Gm38272 TEC Interval_163259 chr9 20231434 20231947 + 0 NA Intergenic Intergenic -5429 ENSMUSG00000066897.8 ENSMUSG00000066897 ENSMUST00000086474 Olfr872 protein_coding Interval_66811 chr16 37806903 37807514 + 0 NA intron (ENSMUSG00000022816.11, intron 1 of 2) protein_coding-intron (ENSMUSG00000022816.11, intron 2 of 10) 30153 ENSMUSG00000022816.11 ENSMUSG00000022816 ENSMUST00000123077 Fstl1 protein_coding Interval_50498 chr14 14098447 14099034 + 0 NA intron (ENSMUSG00000021738.5, intron 2 of 4) protein_coding-intron (ENSMUSG00000021738.5, intron 10 of 11) 21366 ENSMUSG00000021737.4 ENSMUSG00000021737 ENSMUST00000147471 Psmd6 protein_coding Interval_163795 chr9 26039072 26039494 + 0 NA Intergenic Intergenic -5804 ENSMUSG00000111240.1 ENSMUSG00000111240 ENSMUST00000213586 Gm39312 lincRNA Interval_94664 chr2 93150844 93151088 + 0 NA Intergenic Intergenic -36582 ENSMUSG00000068735.14 ENSMUSG00000068735 ENSMUST00000143164 Trp53i11 protein_coding Interval_168777 chr9 86955691 86955965 + 0 NA Intergenic Intergenic 50335 ENSMUSG00000111874.1 ENSMUSG00000111874 ENSMUST00000217543 Gm36539 lincRNA Interval_134289 chr6 24607829 24608373 + 0 NA Intergenic Intergenic 10339 ENSMUSG00000029683.7 ENSMUSG00000029683 ENSMUST00000031694 Lmod2 protein_coding Interval_21263 chr10 127546128 127546964 + 0 NA intron (ENSMUSG00000040249.15, intron 5 of 5) protein_coding-intron (ENSMUSG00000040249.15, intron 71 of 88) -3338 ENSMUSG00000040249.15 ENSMUSG00000040249 ENSMUST00000118455 Lrp1 protein_coding Interval_70798 chr17 14672456 14672770 + 0 NA intron (ENSMUSG00000023885.9, intron 17 of 21) protein_coding-intron (ENSMUSG00000023885.9, intron 17 of 21) -1747 ENSMUSG00000023885.9 ENSMUSG00000023885 ENSMUST00000232616 Thbs2 protein_coding Interval_99080 chr2 157044107 157044514 + 0 NA intron (ENSMUSG00000055485.6, intron 3 of 14) protein_coding-intron (ENSMUSG00000055485.6, intron 3 of 14) -16838 ENSMUSG00000055485.6 ENSMUSG00000055485 ENSMUST00000133571 Soga1 protein_coding Interval_17101 chr10 71360886 71361337 + 0 NA intron (ENSMUSG00000060733.13, intron 1 of 5) protein_coding-intron (ENSMUSG00000060733.13, intron 1 of 5) 13275 ENSMUSG00000060733.13 ENSMUSG00000060733 ENSMUST00000145521 Ipmk protein_coding Interval_111500 chr4 22217358 22217746 + 0 NA Intergenic Intergenic -58281 ENSMUSG00000083376.1 ENSMUSG00000083376 ENSMUST00000121463 Gm11882 processed_pseudogene Interval_138501 chr6 88760443 88761570 + 0 NA intron (ENSMUSG00000033174.17, intron 2 of 6) protein_coding-intron (ENSMUSG00000033174.17, intron 2 of 7) 18279 ENSMUSG00000107835.1 ENSMUSG00000107835 ENSMUST00000204286 Gm43999 TEC Interval_102769 chr3 30908337 30908640 + 0 NA intron (ENSMUSG00000037652.15, intron 13 of 13) protein_coding-intron (ENSMUSG00000037652.15, intron 15 of 16) 49150 ENSMUSG00000102369.1 ENSMUSG00000102369 ENSMUST00000194340 9530022L04Rik TEC Interval_93746 chr2 76517943 76518381 + 0 NA intron (ENSMUSG00000042359.18, intron 3 of 26) protein_coding-intron (ENSMUSG00000042359.18, intron 2 of 26) -30178 ENSMUSG00000042359.18 ENSMUSG00000042359 ENSMUST00000124601 Osbpl6 protein_coding Interval_120191 chr4 144027457 144028795 + 0 NA Intergenic Intergenic -5505 ENSMUSG00000083456.1 ENSMUSG00000083456 ENSMUST00000122287 Gm13108 unprocessed_pseudogene Interval_64385 chr16 11017728 11019134 + 0 NA intron (ENSMUSG00000022500.15, intron 1 of 2) protein_coding-intron (ENSMUSG00000022500.15, intron 1 of 2) -13525 ENSMUSG00000115992.1 ENSMUSG00000115992 ENSMUST00000229764 Gm10832 lincRNA Interval_43193 chr13 25002575 25003351 + 0 NA intron (ENSMUSG00000021339.4, intron 5 of 5) protein_coding-intron (ENSMUSG00000021339.4, intron 4 of 10) -8164 ENSMUSG00000021339.4 ENSMUSG00000021339 ENSMUST00000224894 Mrs2 protein_coding Interval_16373 chr10 62549538 62550476 + 0 NA intron (ENSMUSG00000036955.16, intron 4 of 4) protein_coding-intron (ENSMUSG00000036955.16, intron 7 of 7) 18411 ENSMUSG00000036955.16 ENSMUSG00000036955 ENSMUST00000159722 Kifbp protein_coding Interval_96109 chr2 119808818 119809717 + 0 NA promoter-TSS (ENSMUSG00000027298.17) protein_coding-promoter-TSS (ENSMUSG00000027298.17) 9940 ENSMUSG00000027298.17 ENSMUSG00000027298 ENSMUST00000137135 Tyro3 protein_coding Interval_38326 chr12 77216683 77217919 + 0 NA Intergenic Intergenic 21362 ENSMUSG00000112150.1 ENSMUSG00000112150 ENSMUST00000219513 9530018F02Rik bidirectional_promoter_lncRNA Interval_146819 chr7 52205032 52205262 + 0 NA Intergenic Intergenic -14813 ENSMUSG00000109026.1 ENSMUSG00000109026 ENSMUST00000209088 Gm44683 processed_pseudogene Interval_74882 chr17 57053243 57053846 + 0 NA promoter-TSS (ENSMUSG00000046329.14) protein_coding-promoter-TSS (ENSMUSG00000046329.14) 38 ENSMUSG00000046329.14 ENSMUSG00000046329 ENSMUST00000165187 Slc25a23 protein_coding Interval_161680 chr8 121973748 121974369 + 0 NA promoter-TSS (ENSMUSG00000025316.16) protein_coding-promoter-TSS (ENSMUSG00000025316.16) -236 ENSMUSG00000091952.3 ENSMUSG00000091952 ENSMUST00000174536 Gm17709 processed_pseudogene Interval_153420 chr7 144608032 144608266 + 0 NA exon (ENSMUSG00000031075.19, exon 1 of 4) protein_coding-exon (ENSMUSG00000031075.19, exon 1 of 4) -25686 ENSMUSG00000031077.7 ENSMUSG00000031077 ENSMUST00000033394 Fadd protein_coding Interval_158404 chr8 83520231 83520524 + 0 NA Intergenic Intergenic -15403 ENSMUSG00000047286.7 ENSMUSG00000047286 ENSMUST00000058609 Olfr370 protein_coding Interval_112463 chr4 41393516 41393831 + 0 NA exon (ENSMUSG00000028438.16, exon 8 of 10) protein_coding-exon (ENSMUSG00000028438.16, exon 8 of 10) 22425 ENSMUSG00000028437.14 ENSMUSG00000028437 ENSMUST00000132235 Ubap1 protein_coding Interval_73157 chr17 35154445 35156375 + 0 NA exon (ENSMUSG00000024393.14, exon 16 of 31) protein_coding-exon (ENSMUSG00000024393.14, exon 16 of 31) 7286 ENSMUSG00000064853.1 ENSMUSG00000064853 ENSMUST00000082919 Gm23442 snoRNA Interval_104096 chr3 58556490 58556996 + 0 NA intron (ENSMUSG00000027810.14, intron 12 of 12) protein_coding-intron (ENSMUSG00000027810.14, intron 13 of 13) -19955 ENSMUSG00000075700.9 ENSMUSG00000075700 ENSMUST00000125815 Selenot protein_coding Interval_87191 chr19 46754714 46755562 + 0 NA Intergenic Intergenic 47170 ENSMUSG00000003559.8 ENSMUSG00000003559 ENSMUST00000235266 As3mt protein_coding Interval_130002 chr5 123637927 123638407 + 0 NA intron (ENSMUSG00000049550.17, intron 7 of 13) protein_coding-intron (ENSMUSG00000049550.17, intron 8 of 24) -1893 ENSMUSG00000049550.17 ENSMUSG00000049550 ENSMUST00000199018 Clip1 protein_coding Interval_145273 chr7 31082893 31083111 + 0 NA Intergenic Intergenic -6357 ENSMUSG00000057092.12 ENSMUSG00000057092 ENSMUST00000170456 Fxyd3 protein_coding Interval_65015 chr16 17883942 17884763 + 0 NA intron (ENSMUSG00000003166.20, intron 2 of 3) protein_coding-intron (ENSMUSG00000003166.20, intron 1 of 9) 7319 ENSMUSG00000092470.1 ENSMUSG00000092470 ENSMUST00000150068 Gm20518 protein_coding Interval_160770 chr8 112061271 112062566 + 0 NA promoter-TSS (ENSMUSG00000065700.1) snRNA-promoter-TSS (ENSMUSG00000065700.1) -587 ENSMUSG00000065700.1 ENSMUSG00000065700 ENSMUST00000083766 Gm22827 snRNA Interval_104226 chr3 61187008 61187220 + 0 NA Intergenic Intergenic 104332 ENSMUSG00000102242.1 ENSMUSG00000102242 ENSMUST00000194615 Gm37719 processed_pseudogene Interval_30351 chr11 93800885 93801597 + 0 NA Intergenic Intergenic 74902 ENSMUSG00000054079.12 ENSMUSG00000054079 ENSMUST00000134807 Utp18 protein_coding Interval_126542 chr5 90055592 90056111 + 0 NA Intergenic Intergenic -76378 ENSMUSG00000043618.9 ENSMUSG00000043618 ENSMUST00000135410 Eif5al3-ps processed_pseudogene Interval_22302 chr11 8617110 8617821 + 0 NA intron (ENSMUSG00000020422.14, intron 1 of 30) protein_coding-intron (ENSMUSG00000020422.14, intron 1 of 30) 47216 ENSMUSG00000020422.14 ENSMUSG00000020422 ENSMUST00000134823 Tns3 protein_coding Interval_41146 chr12 111485127 111486687 + 0 NA promoter-TSS (ENSMUSG00000010529.6) protein_coding-promoter-TSS (ENSMUSG00000010529.6) -84 ENSMUSG00000010529.6 ENSMUSG00000010529 ENSMUST00000010673 Gm266 protein_coding Interval_36883 chr12 54939815 54941228 + 0 NA intron (ENSMUSG00000035021.13, intron 2 of 2) protein_coding-intron (ENSMUSG00000035021.13, intron 7 of 26) -10182 ENSMUSG00000035021.13 ENSMUSG00000035021 ENSMUST00000173529 Baz1a protein_coding Interval_74313 chr17 48786417 48787058 + 0 NA Intergenic Intergenic -47991 ENSMUSG00000110276.1 ENSMUSG00000110276 ENSMUST00000209681 Gm45330 lincRNA Interval_125923 chr5 75835182 75835892 + 0 NA exon (ENSMUSG00000107061.1, exon 1 of 4) lincRNA-exon (ENSMUSG00000107061.1, exon 1 of 4) 108 ENSMUSG00000107061.1 ENSMUSG00000107061 ENSMUST00000201551 Gm19590 lincRNA Interval_151113 chr7 118610880 118612359 + 0 NA intron (ENSMUSG00000030650.18, intron 1 of 20) protein_coding-intron (ENSMUSG00000030650.18, intron 2 of 21) -10895 ENSMUSG00000030650.18 ENSMUSG00000030650 ENSMUST00000057320 Tmc5 protein_coding Interval_23954 chr11 28808540 28808711 + 0 NA intron (ENSMUSG00000085510.1, intron 3 of 3) lincRNA-intron (ENSMUSG00000085510.1, intron 3 of 3) 44897 ENSMUSG00000065415.1 ENSMUSG00000065415 ENSMUST00000083481 Mir217 miRNA Interval_135801 chr6 47461222 47461662 + 0 NA intron (ENSMUSG00000029686.15, intron 1 of 1) protein_coding-intron (ENSMUSG00000029686.15, intron 1 of 21) -7122 ENSMUSG00000052241.3 ENSMUSG00000052241 ENSMUST00000064013 A930035D04Rik pseudogene Interval_66004 chr16 30869077 30870793 + 0 NA promoter-TSS (ENSMUSG00000116737.1) lincRNA-promoter-TSS (ENSMUSG00000116737.1) 156 ENSMUSG00000116951.1 ENSMUSG00000116951 ENSMUST00000231571 Gm49756 lincRNA Interval_169332 chr9 96487275 96488181 + 0 NA intron (ENSMUSG00000099564.2, intron 10 of 10) protein_coding-intron (ENSMUSG00000099564.2, intron 10 of 10) 7485 ENSMUSG00000099049.1 ENSMUSG00000099049 ENSMUST00000183341 Gm27289 rRNA Interval_105989 chr3 90483513 90483740 + 0 NA exon (ENSMUSG00000001016.12, exon 7 of 7) protein_coding-exon (ENSMUSG00000001016.12, exon 7 of 7) 7367 ENSMUSG00000001018.15 ENSMUSG00000001018 ENSMUST00000107351 Snapin protein_coding Interval_80757 chr18 46861836 46862206 + 0 NA intron (ENSMUSG00000024481.5, intron 1 of 8) protein_coding-intron (ENSMUSG00000024481.5, intron 1 of 19) 11982 ENSMUSG00000024481.5 ENSMUSG00000024481 ENSMUST00000234519 Lvrn protein_coding Interval_143315 chr7 5117654 5118849 + 0 NA Intergenic Intergenic -1301 ENSMUSG00000035191.15 ENSMUSG00000035191 ENSMUST00000208468 Rfpl4 protein_coding Interval_127190 chr5 100944034 100944529 + 0 NA Intergenic Intergenic -30574 ENSMUSG00000106255.1 ENSMUSG00000106255 ENSMUST00000199211 Gm36793 lincRNA Interval_141408 chr6 128079753 128080126 + 0 NA intron (ENSMUSG00000030352.15, intron 2 of 6) protein_coding-intron (ENSMUSG00000030352.15, intron 2 of 8) 15087 ENSMUSG00000076327.1 ENSMUSG00000076327 ENSMUST00000102372 Gm26338 miRNA Interval_4454 chr1 74284204 74285424 + 0 NA promoter-TSS (ENSMUSG00000006299.13) protein_coding-promoter-TSS (ENSMUSG00000006299.13) -1672 ENSMUSG00000006299.13 ENSMUSG00000006299 ENSMUST00000190008 Aamp protein_coding Interval_59472 chr15 53416336 53416656 + 0 NA Intergenic Intergenic 32577 ENSMUSG00000087805.2 ENSMUSG00000087805 ENSMUST00000157180 Gm27926 snRNA Interval_33997 chr11 119909521 119909882 + 0 NA Intergenic Intergenic -4314 ENSMUSG00000025371.12 ENSMUSG00000025371 ENSMUST00000137055 Chmp6 protein_coding Interval_60879 chr15 77332423 77333121 + 0 NA Intergenic Intergenic 33927 ENSMUSG00000116413.1 ENSMUSG00000116413 ENSMUST00000230034 Gm49436 TEC Interval_95400 chr2 108296517 108297321 + 0 NA Intergenic Intergenic -5600 ENSMUSG00000086758.1 ENSMUSG00000086758 ENSMUST00000156541 Gm13912 lincRNA Interval_109473 chr3 142760515 142760728 + 0 NA Intergenic Intergenic -4602 ENSMUSG00000028271.9 ENSMUSG00000028271 ENSMUST00000196311 Gtf2b protein_coding Interval_92319 chr2 58705801 58707009 + 0 NA intron (ENSMUSG00000086129.1, intron 1 of 2) protein_coding-intron (ENSMUSG00000026839.17, intron 1 of 7) 636 ENSMUSG00000086129.1 ENSMUSG00000086129 ENSMUST00000140464 Gm13558 sense_intronic Interval_48145 chr13 96651832 96652096 + 0 NA TTS (ENSMUSG00000021670.14) protein_coding-TTS (ENSMUSG00000021670.14) 14623 ENSMUSG00000021670.14 ENSMUSG00000021670 ENSMUST00000168374 Hmgcr protein_coding Interval_147182 chr7 64179492 64179919 + 0 NA intron (ENSMUSG00000030523.18, intron 1 of 7) protein_coding-intron (ENSMUSG00000030523.18, intron 1 of 26) 22819 ENSMUSG00000108645.1 ENSMUSG00000108645 ENSMUST00000206473 Gm44722 TEC Interval_161657 chr8 121838521 121839791 + 0 NA exon (ENSMUSG00000110631.1, exon 4 of 4) lincRNA-exon (ENSMUSG00000110631.1, exon 4 of 4) 5503 ENSMUSG00000110631.1 ENSMUSG00000110631 ENSMUST00000212899 Gm42047 lincRNA Interval_18784 chr10 90723988 90724474 + 0 NA intron (ENSMUSG00000058589.14, intron 4 of 11) protein_coding-intron (ENSMUSG00000058589.14, intron 3 of 11) -4729 ENSMUSG00000112153.1 ENSMUSG00000112153 ENSMUST00000218673 Gm47591 sense_intronic Interval_8767 chr1 150718168 150718395 + 0 NA intron (ENSMUSG00000066842.18, intron 35 of 105) protein_coding-intron (ENSMUSG00000066842.18, intron 35 of 106) 92982 ENSMUSG00000093650.2 ENSMUSG00000093650 ENSMUST00000177268 Gm20631 antisense Interval_66176 chr16 32137916 32138140 + 0 NA Intergenic Intergenic 27448 ENSMUSG00000052384.14 ENSMUSG00000052384 ENSMUST00000136809 Nrros protein_coding Interval_5566 chr1 89849452 89850379 + 0 NA intron (ENSMUSG00000055013.16, intron 15 of 16) protein_coding-intron (ENSMUSG00000055013.16, intron 16 of 17) 24434 ENSMUSG00000103252.1 ENSMUSG00000103252 ENSMUST00000193177 Gm37521 TEC Interval_153715 chr8 5043622 5045341 + 0 NA Intergenic Intergenic 24896 ENSMUSG00000096219.1 ENSMUSG00000096219 ENSMUST00000180091 n-R5s93 rRNA Interval_113089 chr4 48034015 48034396 + 0 NA Intergenic Intergenic -11026 ENSMUSG00000028341.9 ENSMUSG00000028341 ENSMUST00000133539 Nr4a3 protein_coding Interval_149023 chr7 92180511 92181572 + 0 NA exon (ENSMUSG00000052572.19, exon 1 of 2) protein_coding-exon (ENSMUSG00000052572.19, exon 1 of 2) -61530 ENSMUSG00000109382.1 ENSMUSG00000109382 ENSMUST00000207593 4930567K12Rik antisense Interval_28837 chr11 78657879 78659267 + 0 NA intron (ENSMUSG00000017376.15, intron 1 of 2) protein_coding-intron (ENSMUSG00000017376.15, intron 1 of 10) 51188 ENSMUSG00000085115.1 ENSMUSG00000085115 ENSMUST00000145158 Gm11197 processed_pseudogene Interval_44625 chr13 46789138 46789538 + 0 NA intron (ENSMUSG00000021375.11, intron 2 of 2) protein_coding-intron (ENSMUSG00000021375.11, intron 22 of 37) 19719 ENSMUSG00000021375.11 ENSMUSG00000021375 ENSMUST00000224923 Kif13a protein_coding Interval_113511 chr4 55441895 55443940 + 0 NA Intergenic Intergenic 22897 ENSMUSG00000086346.1 ENSMUSG00000086346 ENSMUST00000152190 Gm12510 lincRNA Interval_93389 chr2 72663030 72664038 + 0 NA Intergenic Intergenic 29598 ENSMUSG00000081957.5 ENSMUSG00000081957 ENSMUST00000120282 Ak3l2-ps processed_pseudogene Interval_147019 chr7 58438446 58439324 + 0 NA Intergenic Intergenic -79277 ENSMUSG00000109348.1 ENSMUSG00000109348 ENSMUST00000207950 Gm44852 processed_pseudogene Interval_168929 chr9 89104602 89104834 + 0 NA Intergenic Intergenic -12028 ENSMUSG00000079162.8 ENSMUSG00000079162 ENSMUST00000189557 Trim43b protein_coding Interval_157960 chr8 77336784 77338504 + 0 NA TTS (ENSMUSG00000109732.1) antisense-TTS (ENSMUSG00000109732.1) 5674 ENSMUSG00000109732.1 ENSMUSG00000109732 ENSMUST00000210418 Gm45285 antisense Interval_46965 chr13 73793590 73794611 + 0 NA exon (ENSMUSG00000017756.9, exon 8 of 24) protein_coding-exon (ENSMUSG00000017756.9, exon 8 of 24) -10509 ENSMUSG00000017756.9 ENSMUSG00000017756 ENSMUST00000221813 Slc12a7 protein_coding Interval_125121 chr5 64679789 64680911 + 0 NA Intergenic Intergenic 18171 ENSMUSG00000097668.2 ENSMUSG00000097668 ENSMUST00000180650 Gm26761 lincRNA Interval_120102 chr4 141830260 141830560 + 0 NA intron (ENSMUSG00000062478.16, intron 4 of 6) protein_coding-intron (ENSMUSG00000062478.16, intron 4 of 6) -4409 ENSMUSG00000058579.5 ENSMUSG00000058579 ENSMUST00000155826 Cela2a protein_coding Interval_170056 chr9 104105042 104105310 + 0 NA TTS (ENSMUSG00000111218.1) TEC-TTS (ENSMUSG00000111218.1) 740 ENSMUSG00000111218.1 ENSMUSG00000111218 ENSMUST00000216305 Gm46999 TEC Interval_37693 chr12 71130958 71131179 + 0 NA intron (ENSMUSG00000021079.16, intron 1 of 2) protein_coding-intron (ENSMUSG00000021079.16, intron 1 of 3) 5567 ENSMUSG00000021079.16 ENSMUSG00000021079 ENSMUST00000223544 Timm9 protein_coding Interval_123200 chr5 30587902 30589058 + 0 NA exon (ENSMUSG00000049265.7, exon 1 of 2) protein_coding-exon (ENSMUSG00000049265.7, exon 1 of 2) -8625 ENSMUSG00000053214.7 ENSMUSG00000053214 ENSMUST00000200563 Gm9899 processed_transcript Interval_85331 chr19 24861416 24862328 + 0 NA promoter-TSS (ENSMUSG00000041731.13) protein_coding-promoter-TSS (ENSMUSG00000041731.13) -185 ENSMUSG00000041731.13 ENSMUSG00000041731 ENSMUST00000129127 Pgm5 protein_coding Interval_35203 chr12 18073038 18073832 + 0 NA Intergenic Intergenic 11468 ENSMUSG00000113642.1 ENSMUSG00000113642 ENSMUST00000222523 Gm49329 transcribed_unprocessed_pseudogene Interval_79085 chr18 24428515 24429799 + 0 NA promoter-TSS (ENSMUSG00000065532.1) miRNA-promoter-TSS (ENSMUSG00000065532.1) 13 ENSMUSG00000065532.1 ENSMUSG00000065532 ENSMUST00000083598 Mir187 miRNA Interval_137902 chr6 83261918 83262552 + 0 NA TTS (ENSMUSG00000068323.12) protein_coding-TTS (ENSMUSG00000068323.12) -15158 ENSMUSG00000068323.12 ENSMUSG00000068323 ENSMUST00000131432 Slc4a5 protein_coding Interval_95900 chr2 118205347 118205568 + 0 NA intron (ENSMUSG00000027344.14, intron 10 of 10) protein_coding-intron (ENSMUSG00000027344.14, intron 10 of 10) 43325 ENSMUSG00000093368.1 ENSMUSG00000093368 ENSMUST00000175627 Gm22800 miRNA Interval_96508 chr2 125159913 125160281 + 0 NA intron (ENSMUSG00000027202.12, intron 2 of 4) protein_coding-intron (ENSMUSG00000027202.12, intron 2 of 26) 7517 ENSMUSG00000027202.12 ENSMUSG00000027202 ENSMUST00000028630 Slc12a1 protein_coding Interval_35137 chr12 17518846 17519363 + 0 NA Intergenic Intergenic -25868 ENSMUSG00000011179.8 ENSMUSG00000011179 ENSMUST00000222250 Odc1 protein_coding Interval_97187 chr2 132131277 132131753 + 0 NA intron (ENSMUSG00000027340.15, intron 1 of 6) protein_coding-intron (ENSMUSG00000027340.15, intron 1 of 15) -13018 ENSMUSG00000086756.1 ENSMUSG00000086756 ENSMUST00000131603 Gm14051 antisense Interval_43416 chr13 30501734 30502561 + 0 NA Intergenic Intergenic 43215 ENSMUSG00000038462.3 ENSMUSG00000038462 ENSMUST00000042834 Uqcrfs1 protein_coding Interval_119015 chr4 135019799 135020942 + 0 NA Intergenic Intergenic 89468 ENSMUSG00000028821.8 ENSMUSG00000028821 ENSMUST00000144037 Syf2 protein_coding Interval_120638 chr4 149820647 149820835 + 0 NA Intergenic Intergenic 2977 ENSMUSG00000106221.1 ENSMUSG00000106221 ENSMUST00000199807 Gm47301 miRNA Interval_72604 chr17 30978395 30979079 + 0 NA intron (ENSMUSG00000054134.14, intron 6 of 22) protein_coding-intron (ENSMUSG00000054134.14, intron 6 of 22) -8732 ENSMUSG00000118169.1 ENSMUSG00000118169 ENSMUST00000236274 Gm50249 antisense Interval_63674 chr15 102715712 102716554 + 0 NA promoter-TSS (ENSMUSG00000023055.10) protein_coding-promoter-TSS (ENSMUSG00000023055.10) -6073 ENSMUSG00000023055.10 ENSMUSG00000023055 ENSMUST00000230374 Calcoco1 protein_coding Interval_129885 chr5 122916076 122916462 + 0 NA intron (ENSMUSG00000029475.17, intron 1 of 2) protein_coding-intron (ENSMUSG00000029475.17, intron 12 of 22) 5279 ENSMUSG00000029475.17 ENSMUSG00000029475 ENSMUST00000150543 Kdm2b protein_coding Interval_56365 chr14 118112806 118114240 + 0 NA intron (ENSMUSG00000022130.10, intron 10 of 10) protein_coding-intron (ENSMUSG00000022130.10, intron 11 of 11) 19232 ENSMUSG00000022130.10 ENSMUSG00000022130 ENSMUST00000228085 Tgds protein_coding Interval_20220 chr10 116196582 116198146 + 0 NA intron (ENSMUSG00000020151.16, intron 1 of 4) protein_coding-intron (ENSMUSG00000020151.16, intron 6 of 13) 20013 ENSMUSG00000020151.16 ENSMUSG00000020151 ENSMUST00000124369 Ptprr protein_coding Interval_16646 chr10 66801608 66802140 + 0 NA Intergenic Intergenic -7966 ENSMUSG00000112425.1 ENSMUSG00000112425 ENSMUST00000220426 Gm47896 lincRNA Interval_11454 chr1 181997699 181999327 + 0 NA intron (ENSMUSG00000022995.16, intron 1 of 13) protein_coding-intron (ENSMUSG00000022995.16, intron 1 of 14) -8309 ENSMUSG00000102950.1 ENSMUSG00000102950 ENSMUST00000192441 Gm37018 TEC Interval_85588 chr19 28867145 28867555 + 0 NA intron (ENSMUSG00000024935.11, intron 1 of 1) protein_coding-intron (ENSMUSG00000024935.11, intron 1 of 11) -3643 ENSMUSG00000089993.1 ENSMUSG00000089993 ENSMUST00000161562 Gm5822 processed_pseudogene Interval_121407 chr4 155580200 155581006 + 0 NA intron (ENSMUSG00000029063.16, intron 3 of 11) protein_coding-intron (ENSMUSG00000029063.16, intron 3 of 11) -6174 ENSMUSG00000029063.16 ENSMUSG00000029063 ENSMUST00000152297 Nadk protein_coding Interval_33403 chr11 116367763 116369244 + 0 NA intron (ENSMUSG00000052949.14, intron 2 of 17) protein_coding-intron (ENSMUSG00000052949.14, intron 2 of 18) -14247 ENSMUSG00000081929.1 ENSMUSG00000081929 ENSMUST00000121547 Rps11-ps2 processed_pseudogene Interval_116706 chr4 116746559 116746758 + 0 NA intron (ENSMUSG00000028689.14, intron 4 of 4) protein_coding-intron (ENSMUSG00000033985.17, intron 2 of 10) 20759 ENSMUSG00000098491.1 ENSMUSG00000098491 ENSMUST00000183634 Gm27688 misc_RNA Interval_50124 chr14 8126009 8126214 + 0 NA intron (ENSMUSG00000033885.15, intron 3 of 17) protein_coding-intron (ENSMUSG00000033885.15, intron 3 of 17) 27888 ENSMUSG00000033885.15 ENSMUSG00000033885 ENSMUST00000224462 Pxk protein_coding Interval_108885 chr3 132983976 132984824 + 0 NA intron (ENSMUSG00000028018.15, intron 11 of 11) protein_coding-intron (ENSMUSG00000028018.15, intron 11 of 11) 44530 ENSMUSG00000089431.1 ENSMUSG00000089431 ENSMUST00000158806 Gm23196 snRNA Interval_109154 chr3 136905435 136906123 + 0 NA TTS (ENSMUSG00000028161.17) protein_coding-TTS (ENSMUSG00000028161.17) 17830 ENSMUSG00000028161.17 ENSMUSG00000028161 ENSMUST00000130114 Ppp3ca protein_coding Interval_117609 chr4 125020771 125021245 + 0 NA intron (ENSMUSG00000028869.13, intron 2 of 5) protein_coding-intron (ENSMUSG00000028869.13, intron 2 of 5) 1508 ENSMUSG00000080934.1 ENSMUSG00000080934 ENSMUST00000117046 Gm12931 processed_pseudogene Interval_132086 chr5 142709591 142709818 + 0 NA intron (ENSMUSG00000050822.11, intron 2 of 3) protein_coding-intron (ENSMUSG00000050822.11, intron 2 of 10) 17192 ENSMUSG00000050822.11 ENSMUSG00000050822 ENSMUST00000058418 Slc29a4 protein_coding Interval_55276 chr14 79917373 79917690 + 0 NA intron (ENSMUSG00000097927.2, intron 1 of 4) lincRNA-intron (ENSMUSG00000097927.2, intron 3 of 4) 19064 ENSMUSG00000115190.1 ENSMUSG00000115190 ENSMUST00000227349 Gm49542 lincRNA Interval_98151 chr2 148816352 148816724 + 0 NA Intergenic Intergenic -3543 ENSMUSG00000036924.3 ENSMUSG00000036924 ENSMUST00000046589 Cst13 protein_coding Interval_75966 chr17 73934898 73935089 + 0 NA TTS (ENSMUSG00000024066.9) protein_coding-TTS (ENSMUSG00000024066.9) -1080 ENSMUSG00000117182.1 ENSMUSG00000117182 ENSMUST00000233795 Gm18068 processed_pseudogene Interval_145623 chr7 36174296 36174727 + 0 NA Intergenic Intergenic 56237 ENSMUSG00000066543.8 ENSMUSG00000066543 ENSMUST00000119541 Rpl17-ps9 processed_pseudogene Interval_34023 chr11 120072471 120073484 + 0 NA promoter-TSS (ENSMUSG00000039781.14) protein_coding-promoter-TSS (ENSMUSG00000039781.14) -4739 ENSMUSG00000093075.1 ENSMUSG00000093075 ENSMUST00000175334 Gm25948 miRNA Interval_103740 chr3 52253780 52254822 + 0 NA Intergenic Intergenic -7356 ENSMUSG00000102510.2 ENSMUSG00000102510 ENSMUST00000193866 Olfr1398-ps1 unprocessed_pseudogene Interval_29459 chr11 84121003 84122201 + 0 NA intron (ENSMUSG00000018651.14, intron 2 of 15) protein_coding-intron (ENSMUSG00000018651.14, intron 2 of 15) -8098 ENSMUSG00000020532.18 ENSMUSG00000020532 ENSMUST00000183887 Acaca protein_coding Interval_173757 chrX 103481478 103482402 + 0 NA TTS (ENSMUSG00000098078.1) protein_coding-TTS (ENSMUSG00000098078.1) 994 ENSMUSG00000098262.1 ENSMUSG00000098262 ENSMUST00000184872 Gm27520 misc_RNA Interval_86781 chr19 43852037 43853399 + 0 NA intron (ENSMUSG00000025195.9, intron 11 of 13) protein_coding-intron (ENSMUSG00000025195.9, intron 12 of 14) 4633 ENSMUSG00000088490.1 ENSMUSG00000088490 ENSMUST00000157865 Gm24400 snRNA Interval_47743 chr13 92172306 92173704 + 0 NA Intergenic Intergenic -41349 ENSMUSG00000021708.17 ENSMUSG00000021708 ENSMUST00000146492 Rasgrf2 protein_coding Interval_156349 chr8 47609994 47610196 + 0 NA Intergenic Intergenic 18005 ENSMUSG00000109960.1 ENSMUSG00000109960 ENSMUST00000210283 Gm45575 processed_pseudogene Interval_100010 chr2 166477138 166477819 + 0 NA Intergenic Intergenic 30027 ENSMUSG00000085129.1 ENSMUSG00000085129 ENSMUST00000127920 5031425F14Rik lincRNA Interval_146181 chr7 44560624 44561330 + 0 NA Intergenic Intergenic -7269 ENSMUSG00000060601.13 ENSMUSG00000060601 ENSMUST00000136611 Nr1h2 protein_coding Interval_134028 chr6 17834692 17835018 + 0 NA exon (ENSMUSG00000029534.17, exon 3 of 3) protein_coding-exon (ENSMUSG00000029534.17, exon 3 of 3) 330 ENSMUSG00000097700.1 ENSMUSG00000097700 ENSMUST00000181312 Gm26738 antisense Interval_67078 chr16 42711721 42713525 + 0 NA Intergenic Intergenic 48697 ENSMUSG00000116679.1 ENSMUSG00000116679 ENSMUST00000232064 Gm49739 processed_pseudogene Interval_99560 chr2 163202266 163204767 + 0 NA intron (ENSMUSG00000074607.11, intron 1 of 8) protein_coding-intron (ENSMUSG00000074607.11, intron 1 of 8) -21938 ENSMUSG00000074607.11 ENSMUSG00000074607 ENSMUST00000148599 Tox2 protein_coding Interval_32378 chr11 107230421 107230840 + 0 NA intron (ENSMUSG00000040430.18, intron 7 of 7) protein_coding-intron (ENSMUSG00000040430.18, intron 6 of 7) 39536 ENSMUSG00000081360.1 ENSMUSG00000081360 ENSMUST00000119942 Gm11718 processed_pseudogene Interval_27245 chr11 64754148 64754402 + 0 NA Intergenic Intergenic 5752 ENSMUSG00000081756.1 ENSMUSG00000081756 ENSMUST00000121627 Gm12291 processed_pseudogene Interval_93753 chr2 76613671 76614266 + 0 NA Intergenic Intergenic 26765 ENSMUSG00000002731.6 ENSMUSG00000002731 ENSMUST00000140493 Prkra protein_coding Interval_138750 chr6 91633628 91633894 + 0 NA Intergenic Intergenic 34529 ENSMUSG00000108308.1 ENSMUSG00000108308 ENSMUST00000205533 Gm45218 lincRNA Interval_145678 chr7 37301436 37302156 + 0 NA intron (ENSMUSG00000099715.2, intron 1 of 2) lincRNA-intron (ENSMUSG00000099715.2, intron 1 of 2) 2531 ENSMUSG00000099715.2 ENSMUSG00000099715 ENSMUST00000190250 Gm28077 lincRNA Interval_87793 chr19 55908873 55909750 + 0 NA exon (ENSMUSG00000024985.20, exon 5 of 5) protein_coding-exon (ENSMUSG00000024985.20, exon 5 of 5) 67639 ENSMUSG00000099746.1 ENSMUSG00000099746 ENSMUST00000190974 Ppnr sense_intronic Interval_166383 chr9 58805619 58806539 + 0 NA Intergenic Intergenic -17333 ENSMUSG00000032338.9 ENSMUSG00000032338 ENSMUST00000034889 Hcn4 protein_coding Interval_2179 chr1 36891421 36891650 + 0 NA intron (ENSMUSG00000026116.11, intron 1 of 5) protein_coding-intron (ENSMUSG00000026116.11, intron 1 of 40) -19490 ENSMUSG00000103016.1 ENSMUSG00000103016 ENSMUST00000192008 Gm37506 TEC Interval_13887 chr10 24291685 24291898 + 0 NA intron (ENSMUSG00000020000.7, intron 10 of 11) protein_coding-intron (ENSMUSG00000020000.7, intron 10 of 11) 68246 ENSMUSG00000020000.7 ENSMUSG00000020000 ENSMUST00000154916 Moxd1 protein_coding Interval_147411 chr7 66568006 66568651 + 0 NA Intergenic Intergenic -2703 ENSMUSG00000109330.1 ENSMUSG00000109330 ENSMUST00000208155 Gm44754 processed_pseudogene Interval_134533 chr6 29386408 29386770 + 0 NA intron (ENSMUSG00000058831.13, intron 1 of 2) protein_coding-intron (ENSMUSG00000058831.13, intron 1 of 2) 1879 ENSMUSG00000058831.13 ENSMUSG00000058831 ENSMUST00000173653 Opn1sw protein_coding Interval_22886 chr11 17106105 17106773 + 0 NA Intergenic Intergenic -10795 ENSMUSG00000082099.1 ENSMUSG00000082099 ENSMUST00000121971 Gm12013 processed_pseudogene Interval_3344 chr1 57300932 57301343 + 0 NA Intergenic Intergenic -8736 ENSMUSG00000101129.1 ENSMUSG00000101129 ENSMUST00000188353 Gm5254 processed_pseudogene Interval_136526 chr6 55166954 55167405 + 0 NA TTS (ENSMUSG00000108285.1) lincRNA-TTS (ENSMUSG00000108285.1) 7835 ENSMUSG00000003477.5 ENSMUSG00000003477 ENSMUST00000152720 Inmt protein_coding Interval_109210 chr3 137917333 137919282 + 0 NA promoter-TSS (ENSMUSG00000091512.5) protein_coding-promoter-TSS (ENSMUSG00000091512.5) 138 ENSMUSG00000104675.1 ENSMUSG00000104675 ENSMUST00000195951 Gm43689 lincRNA Interval_135288 chr6 38082678 38084040 + 0 NA promoter-TSS (ENSMUSG00000038600.12) protein_coding-promoter-TSS (ENSMUSG00000038600.12) 13 ENSMUSG00000038600.12 ENSMUSG00000038600 ENSMUST00000130816 Atp6v0a4 protein_coding Interval_77026 chr17 85748753 85749071 + 0 NA Intergenic Intergenic 55283 ENSMUSG00000117422.1 ENSMUSG00000117422 ENSMUST00000235073 CJ186046Rik lincRNA Interval_69053 chr16 90319335 90319690 + 0 NA intron (ENSMUSG00000116600.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000116600.1, intron 1 of 1) 4640 ENSMUSG00000116600.1 ENSMUSG00000116600 ENSMUST00000232142 Gm49707 lincRNA Interval_139730 chr6 108184627 108185951 + 0 NA intron (ENSMUSG00000030101.15, intron 1 of 4) protein_coding-intron (ENSMUSG00000030101.15, intron 1 of 8) 267 ENSMUSG00000030101.15 ENSMUSG00000030101 ENSMUST00000171697 Sumf1 protein_coding Interval_94229 chr2 85725746 85726160 + 0 NA TTS (ENSMUSG00000043226.5) protein_coding-TTS (ENSMUSG00000043226.5) 10534 ENSMUSG00000043226.5 ENSMUSG00000043226 ENSMUST00000055517 Olfr1009 protein_coding Interval_140136 chr6 114714595 114714809 + 0 NA intron (ENSMUSG00000030314.16, intron 16 of 17) protein_coding-intron (ENSMUSG00000030314.16, intron 16 of 18) -23832 ENSMUSG00000107411.1 ENSMUSG00000107411 ENSMUST00000203280 Gm19040 processed_pseudogene Interval_130380 chr5 127160233 127160504 + 0 NA Intergenic Intergenic -10192 ENSMUSG00000105308.4 ENSMUSG00000105308 ENSMUST00000196713 4930572K03Rik lincRNA Interval_111257 chr4 16072699 16073024 + 0 NA Intergenic Intergenic 48027 ENSMUSG00000081679.1 ENSMUSG00000081679 ENSMUST00000117437 Gm11874 processed_pseudogene Interval_107156 chr3 104010207 104010663 + 0 NA intron (ENSMUSG00000058388.14, intron 19 of 19) protein_coding-intron (ENSMUSG00000058388.14, intron 19 of 19) 41847 ENSMUSG00000058388.14 ENSMUSG00000058388 ENSMUST00000130385 Phtf1 protein_coding Interval_84004 chr19 6052083 6053105 + 0 NA exon (ENSMUSG00000024807.18, exon 14 of 14) protein_coding-exon (ENSMUSG00000024807.18, exon 14 of 14) 1260 ENSMUSG00000098928.1 ENSMUSG00000098928 ENSMUST00000184338 Mir6988 miRNA Interval_140413 chr6 117942552 117943013 + 0 NA Intergenic Intergenic -6829 ENSMUSG00000004988.9 ENSMUSG00000004988 ENSMUST00000203842 Fxyd4 protein_coding Interval_32834 chr11 111445843 111446670 + 0 NA Intergenic Intergenic 167050 ENSMUSG00000082448.1 ENSMUSG00000082448 ENSMUST00000120443 Gm11676 processed_pseudogene Interval_172370 chrX 14547745 14547944 + 0 NA Intergenic Intergenic -232253 ENSMUSG00000064772.1 ENSMUSG00000064772 ENSMUST00000082838 Gm25202 snRNA Interval_54533 chr14 70530407 70531757 + 0 NA exon (ENSMUSG00000033595.7, exon 1 of 8) protein_coding-exon (ENSMUSG00000033595.7, exon 1 of 8) 212 ENSMUSG00000033595.7 ENSMUSG00000033595 ENSMUST00000226548 Lgi3 protein_coding Interval_47361 chr13 81863651 81863848 + 0 NA Intergenic Intergenic 65938 ENSMUSG00000114634.1 ENSMUSG00000114634 ENSMUST00000224647 F830210D05Rik TEC Interval_50688 chr14 18238138 18239603 + 0 NA exon (ENSMUSG00000021775.11, exon 1 of 8) protein_coding-exon (ENSMUSG00000021775.11, exon 1 of 8) 141 ENSMUSG00000021775.11 ENSMUSG00000021775 ENSMUST00000143308 Nr1d2 protein_coding Interval_147870 chr7 74687168 74687578 + 0 NA Intergenic Intergenic -12483 ENSMUSG00000108570.1 ENSMUSG00000108570 ENSMUST00000206241 Gm7726 processed_pseudogene Interval_171102 chr9 114541023 114541829 + 0 NA intron (ENSMUSG00000079259.2, intron 1 of 3) protein_coding-intron (ENSMUSG00000079259.2, intron 1 of 3) 22943 ENSMUSG00000079259.2 ENSMUSG00000079259 ENSMUST00000111816 Trim71 protein_coding Interval_74702 chr17 56057174 56057994 + 0 NA promoter-TSS (ENSMUSG00000002835.9) protein_coding-promoter-TSS (ENSMUSG00000002835.9) 10770 ENSMUSG00000002835.9 ENSMUSG00000002835 ENSMUST00000232828 Chaf1a protein_coding Interval_105164 chr3 83055034 83056046 + 0 NA promoter-TSS (ENSMUSG00000027998.11) protein_coding-promoter-TSS (ENSMUSG00000027998.11) -5677 ENSMUSG00000033831.5 ENSMUSG00000033831 ENSMUST00000048246 Fgb protein_coding Interval_62826 chr15 97272237 97272467 + 0 NA intron (ENSMUSG00000044250.8, intron 1 of 1) protein_coding-intron (ENSMUSG00000044250.8, intron 1 of 5) -25230 ENSMUSG00000048218.6 ENSMUSG00000048218 ENSMUST00000053106 Amigo2 protein_coding Interval_164352 chr9 35617269 35617554 + 0 NA intron (ENSMUSG00000074452.13, intron 4 of 10) protein_coding-intron (ENSMUSG00000074452.13, intron 4 of 10) -5470 ENSMUSG00000032099.3 ENSMUSG00000032099 ENSMUST00000034610 Pate4 protein_coding Interval_15849 chr10 58371105 58371890 + 0 NA promoter-TSS (ENSMUSG00000019920.18) protein_coding-promoter-TSS (ENSMUSG00000019920.18) 43 ENSMUSG00000019920.18 ENSMUSG00000019920 ENSMUST00000148799 Lims1 protein_coding Interval_1880 chr1 34260108 34261388 + 0 NA intron (ENSMUSG00000026131.20, intron 13 of 22) protein_coding-intron (ENSMUSG00000026131.20, intron 68 of 97) 10380 ENSMUSG00000103001.1 ENSMUSG00000103001 ENSMUST00000194920 A930005N03Rik TEC Interval_57332 chr15 8839562 8839779 + 0 NA Intergenic Intergenic -74814 ENSMUSG00000107028.1 ENSMUSG00000107028 ENSMUST00000202103 Gm5043 processed_pseudogene Interval_47624 chr13 90280934 90281364 + 0 NA Intergenic Intergenic 42977 ENSMUSG00000102756.1 ENSMUSG00000102756 ENSMUST00000193481 Gm37054 TEC Interval_74273 chr17 47824313 47824567 + 0 NA TTS (ENSMUSG00000032717.14) protein_coding-TTS (ENSMUSG00000032717.14) 8832 ENSMUSG00000032717.14 ENSMUSG00000032717 ENSMUST00000129360 Mdfi protein_coding Interval_69234 chr16 91582092 91582906 + 0 NA intron (ENSMUSG00000022964.14, intron 4 of 5) protein_coding-intron (ENSMUSG00000022964.14, intron 3 of 6) 15301 ENSMUSG00000022964.14 ENSMUSG00000022964 ENSMUST00000141885 Tmem50b protein_coding Interval_98366 chr2 151866435 151867092 + 0 NA intron (ENSMUSG00000086620.1, intron 1 of 1) protein_coding-intron (ENSMUSG00000032852.3, intron 1 of 4) 197 ENSMUSG00000086620.1 ENSMUSG00000086620 ENSMUST00000152229 Rspo4os antisense Interval_67302 chr16 45756704 45757655 + 0 NA TTS (ENSMUSG00000033149.17) protein_coding-TTS (ENSMUSG00000033149.17) -14279 ENSMUSG00000033157.17 ENSMUSG00000033157 ENSMUST00000155741 Abhd10 protein_coding Interval_61970 chr15 85571829 85572672 + 0 NA intron (ENSMUSG00000022382.15, intron 1 of 3) protein_coding-intron (ENSMUSG00000022382.15, intron 1 of 3) -5228 ENSMUSG00000022382.15 ENSMUSG00000022382 ENSMUST00000230299 Wnt7b protein_coding Interval_87525 chr19 53251648 53251892 + 0 NA intron (ENSMUSG00000118314.1, intron 3 of 3) lincRNA-intron (ENSMUSG00000118314.1, intron 1 of 2) 3420 ENSMUSG00000118314.1 ENSMUSG00000118314 ENSMUST00000237379 1700001K23Rik lincRNA Interval_10927 chr1 177095145 177095508 + 0 NA intron (ENSMUSG00000019699.16, intron 5 of 12) protein_coding-intron (ENSMUSG00000019699.16, intron 5 of 12) -19542 ENSMUSG00000102749.1 ENSMUSG00000102749 ENSMUST00000194506 Gm37598 TEC Interval_41432 chr12 113858465 113859665 + 0 NA TTS (ENSMUSG00000095571.2) IG_V_gene-TTS (ENSMUSG00000095571.2) 605 ENSMUSG00000095571.2 ENSMUSG00000095571 ENSMUST00000103459 Ighv5-17 IG_V_gene Interval_30441 chr11 94379407 94379873 + 0 NA intron (ENSMUSG00000020865.16, intron 1 of 30) protein_coding-intron (ENSMUSG00000020865.16, intron 1 of 30) 13336 ENSMUSG00000020865.16 ENSMUSG00000020865 ENSMUST00000126566 Abcc3 protein_coding Interval_143293 chr7 4993300 4994868 + 0 NA TTS (ENSMUSG00000051550.10) protein_coding-TTS (ENSMUSG00000051550.10) 1256 ENSMUSG00000051550.10 ENSMUSG00000051550 ENSMUST00000160808 Zfp579 protein_coding Interval_169215 chr9 95581250 95582568 + 0 NA Intergenic Intergenic 22252 ENSMUSG00000064225.6 ENSMUSG00000064225 ENSMUST00000079597 Paqr9 protein_coding Interval_47684 chr13 91217283 91218069 + 0 NA intron (ENSMUSG00000021619.6, intron 1 of 6) protein_coding-intron (ENSMUSG00000021619.6, intron 1 of 7) -2776 ENSMUSG00000091419.2 ENSMUSG00000091419 ENSMUST00000164671 Gm17450 pseudogene Interval_141391 chr6 127945520 127946398 + 0 NA intron (ENSMUSG00000030351.5, intron 7 of 7) protein_coding-intron (ENSMUSG00000030351.5, intron 7 of 7) -1120 ENSMUSG00000085813.1 ENSMUSG00000085813 ENSMUST00000132657 Gm15870 antisense Interval_19290 chr10 96137329 96137632 + 0 NA TTS (ENSMUSG00000096486.1) protein_coding-TTS (ENSMUSG00000096486.1) 877 ENSMUSG00000096486.1 ENSMUSG00000096486 ENSMUST00000074615 Gm5426 protein_coding Interval_167507 chr9 70143526 70143756 + 0 NA Intergenic Intergenic 5295 ENSMUSG00000077660.1 ENSMUSG00000077660 ENSMUST00000104472 Gm24257 snoRNA Interval_125415 chr5 66830504 66831210 + 0 NA intron (ENSMUSG00000037736.20, intron 1 of 31) protein_coding-intron (ENSMUSG00000037736.20, intron 1 of 25) -59509 ENSMUSG00000082420.2 ENSMUSG00000082420 ENSMUST00000121056 Gm6517 processed_pseudogene Interval_166377 chr9 58743535 58744022 + 0 NA intron (ENSMUSG00000074269.10, intron 1 of 2) protein_coding-intron (ENSMUSG00000074269.10, intron 1 of 2) -47767 ENSMUSG00000093473.1 ENSMUSG00000093473 ENSMUST00000177528 Gm20620 processed_pseudogene Interval_10340 chr1 169657847 169658191 + 0 NA intron (ENSMUSG00000026678.10, intron 1 of 3) protein_coding-intron (ENSMUSG00000026678.10, intron 1 of 4) 2497 ENSMUSG00000026678.10 ENSMUSG00000026678 ENSMUST00000152809 Rgs5 protein_coding Interval_66574 chr16 35236701 35237941 + 0 NA intron (ENSMUSG00000022840.9, intron 1 of 20) protein_coding-intron (ENSMUSG00000022840.9, intron 1 of 20) -2398 ENSMUSG00000084581.1 ENSMUSG00000084581 ENSMUST00000122632 Gm25179 snRNA Interval_35264 chr12 19210405 19211375 + 0 NA Intergenic Intergenic -7192 ENSMUSG00000113110.1 ENSMUSG00000113110 ENSMUST00000221548 Gm48528 processed_pseudogene Interval_95322 chr2 106524622 106524937 + 0 NA Intergenic Intergenic -1676 ENSMUSG00000087226.1 ENSMUSG00000087226 ENSMUST00000130634 Gm14015 lincRNA Interval_50055 chr13 120313116 120314336 + 0 NA Intergenic Intergenic -3152 ENSMUSG00000095821.2 ENSMUSG00000095821 ENSMUST00000178349 Tcstv3 protein_coding Interval_119432 chr4 137603085 137604011 + 0 NA intron (ENSMUSG00000043411.15, intron 2 of 3) protein_coding-intron (ENSMUSG00000043411.15, intron 1 of 27) -21444 ENSMUSG00000094035.3 ENSMUSG00000094035 ENSMUST00000238941 Ldlrad2 protein_coding Interval_171530 chr9 119052262 119053291 + 0 NA promoter-TSS (ENSMUSG00000038775.14) protein_coding-promoter-TSS (ENSMUSG00000038775.14) -10679 ENSMUSG00000038775.14 ENSMUSG00000038775 ENSMUST00000151638 Vill protein_coding Interval_118123 chr4 129085603 129086674 + 0 NA TTS (ENSMUSG00000028793.15) protein_coding-TTS (ENSMUSG00000028793.15) -20731 ENSMUSG00000028786.15 ENSMUSG00000028786 ENSMUST00000148979 Tmem54 protein_coding Interval_11923 chr1 187177812 187178988 + 0 NA intron (ENSMUSG00000026611.17, intron 4 of 10) protein_coding-intron (ENSMUSG00000026611.17, intron 4 of 9) -35303 ENSMUSG00000026611.17 ENSMUSG00000026611 ENSMUST00000183469 Spata17 protein_coding Interval_84548 chr19 12660229 12660441 + 0 NA Intergenic Intergenic -4920 ENSMUSG00000065892.1 ENSMUSG00000065892 ENSMUST00000083958 Gm24521 snRNA Interval_112279 chr4 39853207 39853514 + 0 NA Intergenic Intergenic -8486 ENSMUSG00000082022.1 ENSMUSG00000082022 ENSMUST00000117380 Gm12386 processed_pseudogene Interval_34116 chr11 120726877 120727533 + 0 NA promoter-TSS (ENSMUSG00000039450.11) protein_coding-promoter-TSS (ENSMUSG00000039450.11) 39 ENSMUSG00000039450.11 ENSMUSG00000039450 ENSMUST00000122883 Dcxr protein_coding Interval_172516 chrX 23364452 23365545 + 0 NA promoter-TSS (ENSMUSG00000036782.13) protein_coding-promoter-TSS (ENSMUSG00000036782.13) 55 ENSMUSG00000036782.13 ENSMUSG00000036782 ENSMUST00000153345 Klhl13 protein_coding Interval_152082 chr7 128926563 128926757 + 0 NA intron (ENSMUSG00000108600.1, intron 4 of 5) lincRNA-intron (ENSMUSG00000108600.1, intron 4 of 5) 71361 ENSMUSG00000108540.1 ENSMUSG00000108540 ENSMUST00000206199 Gm4768 processed_pseudogene Interval_18018 chr10 81383881 81384959 + 0 NA promoter-TSS (ENSMUSG00000078440.10) protein_coding-promoter-TSS (ENSMUSG00000078440.10) -46 ENSMUSG00000113262.1 ENSMUSG00000113262 ENSMUST00000131968 Gm48551 protein_coding Interval_122533 chr5 23632760 23633462 + 0 NA intron (ENSMUSG00000062604.11, intron 1 of 3) protein_coding-intron (ENSMUSG00000062604.11, intron 1 of 3) 41270 ENSMUSG00000088359.1 ENSMUSG00000088359 ENSMUST00000157734 Gm24009 rRNA Interval_130700 chr5 129873606 129875720 + 0 NA promoter-TSS (ENSMUSG00000025537.12) protein_coding-promoter-TSS (ENSMUSG00000025537.12) 2284 ENSMUSG00000106840.1 ENSMUSG00000106840 ENSMUST00000201268 Gm42790 TEC Interval_13648 chr10 20399863 20401007 + 0 NA TTS (ENSMUSG00000019990.15) protein_coding-TTS (ENSMUSG00000019990.15) -34998 ENSMUSG00000111351.1 ENSMUSG00000111351 ENSMUST00000213596 Gm48537 processed_pseudogene Interval_161145 chr8 117781810 117782073 + 0 NA Intergenic Intergenic 11276 ENSMUSG00000031843.2 ENSMUSG00000031843 ENSMUST00000211818 Mphosph6 protein_coding Interval_124188 chr5 39614476 39615352 + 0 NA TTS (ENSMUSG00000051022.7) protein_coding-TTS (ENSMUSG00000051022.7) -4570 ENSMUSG00000107134.1 ENSMUSG00000107134 ENSMUST00000200697 Gm42528 TEC Interval_35664 chr12 27133263 27133532 + 0 NA TTS (ENSMUSG00000094002.3) lincRNA-TTS (ENSMUSG00000094002.3) 27106 ENSMUSG00000094002.3 ENSMUSG00000094002 ENSMUST00000183238 Gm9866 lincRNA Interval_53327 chr14 56194559 56195454 + 0 NA intron (ENSMUSG00000114303.1, intron 2 of 2) antisense-intron (ENSMUSG00000114303.1, intron 2 of 2) 13179 ENSMUSG00000114806.1 ENSMUSG00000114806 ENSMUST00000223969 Gm8963 processed_pseudogene Interval_3431 chr1 58299670 58299908 + 0 NA exon (ENSMUSG00000079554.2, exon 11 of 36) protein_coding-exon (ENSMUSG00000079554.2, exon 11 of 36) 15867 ENSMUSG00000089822.1 ENSMUSG00000089822 ENSMUST00000161126 Gm15759 antisense Interval_84850 chr19 17467780 17468018 + 0 NA intron (ENSMUSG00000024713.16, intron 28 of 37) protein_coding-intron (ENSMUSG00000024713.16, intron 28 of 37) 70462 ENSMUSG00000024712.9 ENSMUSG00000024712 ENSMUST00000146171 Rfk protein_coding Interval_29243 chr11 82085281 82085511 + 0 NA Intergenic Intergenic -16456 ENSMUSG00000035352.3 ENSMUSG00000035352 ENSMUST00000124916 Ccl12 protein_coding Interval_40117 chr12 101711214 101712111 + 0 NA promoter-TSS (ENSMUSG00000021187.14) protein_coding-promoter-TSS (ENSMUSG00000021187.14) 6861 ENSMUSG00000021187.14 ENSMUSG00000021187 ENSMUST00000160830 Tc2n protein_coding Interval_30818 chr11 96691230 96692078 + 0 NA intron (ENSMUSG00000057058.16, intron 4 of 7) protein_coding-intron (ENSMUSG00000057058.16, intron 4 of 11) -75148 ENSMUSG00000085242.1 ENSMUSG00000085242 ENSMUST00000124865 Gm11537 antisense Interval_126778 chr5 92854338 92855577 + 0 NA intron (ENSMUSG00000029381.16, intron 1 of 9) protein_coding-intron (ENSMUSG00000029381.16, intron 1 of 9) -1514 ENSMUSG00000029381.16 ENSMUSG00000029381 ENSMUST00000172752 Shroom3 protein_coding Interval_95163 chr2 104471023 104471648 + 0 NA exon (ENSMUSG00000027177.14, exon 2 of 16) protein_coding-exon (ENSMUSG00000027177.14, exon 2 of 16) -32083 ENSMUSG00000027177.14 ENSMUSG00000027177 ENSMUST00000132622 Hipk3 protein_coding Interval_155452 chr8 33666394 33666671 + 0 NA intron (ENSMUSG00000031584.16, intron 1 of 12) protein_coding-intron (ENSMUSG00000031584.16, intron 1 of 12) 14009 ENSMUSG00000031584.16 ENSMUSG00000031584 ENSMUST00000149528 Gsr protein_coding Interval_21262 chr10 127539652 127540361 + 0 NA promoter-TSS (ENSMUSG00000040249.15) protein_coding-promoter-TSS (ENSMUSG00000040249.15) 3202 ENSMUSG00000040249.15 ENSMUSG00000040249 ENSMUST00000118455 Lrp1 protein_coding Interval_54439 chr14 69776306 69776716 + 0 NA promoter-TSS (ENSMUSG00000022074.6) protein_coding-promoter-TSS (ENSMUSG00000022074.6) 9026 ENSMUSG00000022074.6 ENSMUSG00000022074 ENSMUST00000224235 Tnfrsf10b protein_coding Interval_17788 chr10 80088634 80089729 + 0 NA intron (ENSMUSG00000035673.10, intron 1 of 11) protein_coding-intron (ENSMUSG00000035673.10, intron 1 of 31) 15189 ENSMUSG00000035673.10 ENSMUSG00000035673 ENSMUST00000217683 Sbno2 protein_coding Interval_9318 chr1 156200454 156200763 + 0 NA intron (ENSMUSG00000015484.3, intron 1 of 4) protein_coding-intron (ENSMUSG00000015484.3, intron 1 of 4) 4418 ENSMUSG00000015484.3 ENSMUSG00000015484 ENSMUST00000015628 Fam163a protein_coding Interval_150637 chr7 112994520 112994707 + 0 NA intron (ENSMUSG00000110207.1, intron 2 of 3) lincRNA-intron (ENSMUSG00000110207.1, intron 2 of 3) 10710 ENSMUSG00000110207.1 ENSMUSG00000110207 ENSMUST00000210768 Gm33586 lincRNA Interval_8157 chr1 136139859 136140600 + 0 NA intron (ENSMUSG00000041642.18, intron 1 of 35) protein_coding-intron (ENSMUSG00000041642.18, intron 1 of 34) -9058 ENSMUSG00000086264.9 ENSMUSG00000086264 ENSMUST00000165464 Gm15850 processed_transcript Interval_74278 chr17 47857991 47858210 + 0 NA Intergenic Intergenic 9266 ENSMUSG00000064748.1 ENSMUSG00000064748 ENSMUST00000082814 n-R5s28 rRNA Interval_22773 chr11 15239111 15239517 + 0 NA Intergenic Intergenic -172986 ENSMUSG00000064746.1 ENSMUSG00000064746 ENSMUST00000082812 Gm24707 snRNA Interval_62191 chr15 88706404 88710071 + 0 NA intron (ENSMUSG00000022387.17, intron 6 of 12) protein_coding-intron (ENSMUSG00000022387.17, intron 6 of 7) 10918 ENSMUSG00000022387.17 ENSMUSG00000022387 ENSMUST00000139515 Brd1 protein_coding Interval_136557 chr6 55564598 55564787 + 0 NA Intergenic Intergenic 31186 ENSMUSG00000104746.1 ENSMUSG00000104746 ENSMUST00000196358 Gm44352 miRNA Interval_67049 chr16 42169698 42169934 + 0 NA intron (ENSMUSG00000061080.11, intron 5 of 5) protein_coding-intron (ENSMUSG00000061080.11, intron 6 of 6) 15101 ENSMUSG00000116841.1 ENSMUSG00000116841 ENSMUST00000232237 Gm49737 processed_pseudogene Interval_168508 chr9 82844914 82845188 + 0 NA intron (ENSMUSG00000032251.12, intron 2 of 3) protein_coding-intron (ENSMUSG00000032251.12, intron 1 of 2) 15511 ENSMUSG00000032251.12 ENSMUSG00000032251 ENSMUST00000034783 Irak1bp1 protein_coding Interval_120504 chr4 149047168 149048218 + 0 NA intron (ENSMUSG00000028975.16, intron 2 of 3) protein_coding-intron (ENSMUSG00000028975.16, intron 2 of 8) -48690 ENSMUSG00000081086.1 ENSMUSG00000081086 ENSMUST00000118516 Gm9506 processed_pseudogene Interval_70578 chr17 12113154 12113407 + 0 NA Intergenic Intergenic -6049 ENSMUSG00000023827.8 ENSMUSG00000023827 ENSMUST00000167905 Agpat4 protein_coding Interval_38545 chr12 80022532 80023989 + 0 NA intron (ENSMUSG00000111933.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000111933.1, intron 1 of 1) -43409 ENSMUSG00000112292.1 ENSMUSG00000112292 ENSMUST00000219732 Gm8275 processed_pseudogene Interval_61872 chr15 84806725 84806971 + 0 NA intron (ENSMUSG00000016624.15, intron 3 of 11) protein_coding-intron (ENSMUSG00000016624.15, intron 3 of 12) -19399 ENSMUSG00000016624.15 ENSMUSG00000016624 ENSMUST00000160389 Phf21b protein_coding Interval_82358 chr18 72553859 72554356 + 0 NA Intergenic Intergenic -126999 ENSMUSG00000117831.1 ENSMUSG00000117831 ENSMUST00000235371 Gm6995 processed_pseudogene Interval_103588 chr3 50620790 50621697 + 0 NA Intergenic Intergenic 7168 ENSMUSG00000104068.1 ENSMUSG00000104068 ENSMUST00000193881 Gm37199 TEC Interval_150394 chr7 110121383 110123189 + 0 NA TTS (ENSMUSG00000109904.1) TEC-TTS (ENSMUSG00000109904.1) 240 ENSMUSG00000031016.9 ENSMUSG00000031016 ENSMUST00000033326 Wee1 protein_coding Interval_36066 chr12 34926385 34926595 + 0 NA Intergenic Intergenic 31466 ENSMUSG00000077264.1 ENSMUSG00000077264 ENSMUST00000104076 Gm24429 snoRNA Interval_26270 chr11 55545938 55546341 + 0 NA intron (ENSMUSG00000000263.15, intron 2 of 7) protein_coding-intron (ENSMUSG00000000263.15, intron 3 of 8) -8801 ENSMUSG00000083363.1 ENSMUSG00000083363 ENSMUST00000120158 Gm12237 processed_pseudogene Interval_55904 chr14 101930735 101931458 + 0 NA TTS (ENSMUSG00000033060.16) protein_coding-TTS (ENSMUSG00000033060.16) 51667 ENSMUSG00000115584.1 ENSMUSG00000115584 ENSMUST00000226515 Gm5854 processed_pseudogene Interval_58498 chr15 35240867 35241199 + 0 NA intron (ENSMUSG00000115345.1, intron 3 of 4) lincRNA-intron (ENSMUSG00000115345.1, intron 3 of 4) 40229 ENSMUSG00000115345.1 ENSMUSG00000115345 ENSMUST00000228112 Gm33497 lincRNA Interval_52174 chr14 38156273 38156487 + 0 NA Intergenic Intergenic 82269 ENSMUSG00000114450.1 ENSMUSG00000114450 ENSMUST00000224927 Gm18523 processed_pseudogene Interval_78243 chr18 10629514 10630547 + 0 NA intron (ENSMUSG00000002477.5, intron 2 of 2) protein_coding-intron (ENSMUSG00000002477.5, intron 2 of 2) 12161 ENSMUSG00000002477.5 ENSMUSG00000002477 ENSMUST00000234077 Snrpd1 protein_coding Interval_65436 chr16 22346878 22348947 + 0 NA Intergenic Intergenic 51774 ENSMUSG00000116857.2 ENSMUSG00000116857 ENSMUST00000231661 Gm49582 unprocessed_pseudogene Interval_30987 chr11 97598113 97599922 + 0 NA intron (ENSMUSG00000085860.1, intron 1 of 3) processed_transcript-intron (ENSMUSG00000085860.1, intron 1 of 3) -15965 ENSMUSG00000085860.1 ENSMUSG00000085860 ENSMUST00000145262 2410003L11Rik processed_transcript Interval_88428 chr2 5005867 5007075 + 0 NA TTS (ENSMUSG00000026669.14) protein_coding-TTS (ENSMUSG00000026669.14) -11633 ENSMUSG00000026669.14 ENSMUSG00000026669 ENSMUST00000125851 Mcm10 protein_coding Interval_104095 chr3 58554848 58555477 + 0 NA intron (ENSMUSG00000027810.14, intron 10 of 12) protein_coding-intron (ENSMUSG00000027810.14, intron 11 of 13) -21536 ENSMUSG00000075700.9 ENSMUSG00000075700 ENSMUST00000125815 Selenot protein_coding Interval_139882 chr6 112361992 112363054 + 0 NA intron (ENSMUSG00000034387.13, intron 11 of 11) protein_coding-intron (ENSMUSG00000034387.13, intron 11 of 11) 25495 ENSMUSG00000034387.13 ENSMUSG00000034387 ENSMUST00000238755 Ssu2 protein_coding Interval_88795 chr2 11086516 11087415 + 0 NA TTS (ENSMUSG00000084560.1) snRNA-TTS (ENSMUSG00000084560.1) 948 ENSMUSG00000084560.1 ENSMUSG00000084560 ENSMUST00000122611 Gm26478 snRNA Interval_61135 chr15 79452625 79454506 + 0 NA intron (ENSMUSG00000022433.20, intron 1 of 4) protein_coding-intron (ENSMUSG00000022433.20, intron 1 of 4) -11429 ENSMUSG00000022433.20 ENSMUSG00000022433 ENSMUST00000156043 Csnk1e protein_coding Interval_79619 chr18 34044315 34044831 + 0 NA Intergenic Intergenic -2253 ENSMUSG00000118246.1 ENSMUSG00000118246 ENSMUST00000236132 Gm6052 processed_pseudogene Interval_84852 chr19 17475299 17475718 + 0 NA intron (ENSMUSG00000024713.16, intron 25 of 37) protein_coding-intron (ENSMUSG00000024713.16, intron 25 of 37) 78071 ENSMUSG00000024712.9 ENSMUSG00000024712 ENSMUST00000146171 Rfk protein_coding Interval_101224 chr2 179580241 179581219 + 0 NA intron (ENSMUSG00000000305.12, intron 2 of 2) protein_coding-intron (ENSMUSG00000000305.12, intron 2 of 15) 32837 ENSMUSG00000083410.1 ENSMUSG00000083410 ENSMUST00000120800 Gm14300 processed_pseudogene Interval_8987 chr1 152915200 152917909 + 0 NA Intergenic Intergenic -20050 ENSMUSG00000103840.1 ENSMUSG00000103840 ENSMUST00000195145 1700040K01Rik TEC Interval_5028 chr1 84404676 84407231 + 0 NA exon (ENSMUSG00000036766.12, exon 10 of 13) protein_coding-exon (ENSMUSG00000036766.12, exon 10 of 13) -10554 ENSMUSG00000104396.1 ENSMUSG00000104396 ENSMUST00000191700 Gm37959 TEC Interval_63510 chr15 101552986 101553717 + 0 NA exon (ENSMUSG00000048699.4, exon 9 of 9) protein_coding-exon (ENSMUSG00000048699.4, exon 9 of 9) -2684 ENSMUSG00000049548.9 ENSMUSG00000049548 ENSMUST00000023713 Krt82 protein_coding Interval_167931 chr9 74530231 74530898 + 0 NA Intergenic Intergenic 30814 ENSMUSG00000101526.1 ENSMUSG00000101526 ENSMUST00000189842 Gm28622 lincRNA Interval_124368 chr5 44820574 44820901 + 0 NA Intergenic Intergenic -21118 ENSMUSG00000039706.11 ENSMUSG00000039706 ENSMUST00000198894 Ldb2 protein_coding Interval_95738 chr2 115537918 115538201 + 0 NA Intergenic Intergenic -10315 ENSMUSG00000085582.7 ENSMUSG00000085582 ENSMUST00000125147 3110099E03Rik lincRNA Interval_51219 chr14 25156118 25156341 + 0 NA Intergenic Intergenic -12988 ENSMUSG00000114916.1 ENSMUSG00000114916 ENSMUST00000225429 4930572O13Rik lincRNA Interval_123657 chr5 34335680 34337434 + 0 NA promoter-TSS (ENSMUSG00000029110.13) protein_coding-promoter-TSS (ENSMUSG00000029110.13) -9027 ENSMUSG00000107287.1 ENSMUSG00000107287 ENSMUST00000200791 Gm43458 lincRNA Interval_78001 chr18 6567316 6568715 + 0 NA Intergenic Intergenic 10885 ENSMUSG00000117425.1 ENSMUSG00000117425 ENSMUST00000234402 Gm7464 processed_pseudogene Interval_150942 chr7 116520879 116521075 + 0 NA intron (ENSMUSG00000030659.14, intron 2 of 12) protein_coding-intron (ENSMUSG00000030659.14, intron 2 of 13) -7835 ENSMUSG00000030659.14 ENSMUSG00000030659 ENSMUST00000183335 Nucb2 protein_coding Interval_542 chr1 7118107 7118719 + 0 NA intron (ENSMUSG00000051285.17, intron 1 of 1) protein_coding-intron (ENSMUSG00000051285.17, intron 1 of 5) 18173 ENSMUSG00000098201.1 ENSMUSG00000098201 ENSMUST00000182051 Gm26983 processed_pseudogene Interval_115365 chr4 98223483 98224025 + 0 NA Intergenic Intergenic 11536 ENSMUSG00000082388.1 ENSMUSG00000082388 ENSMUST00000121092 Gm12692 processed_pseudogene Interval_79317 chr18 30428443 30428764 + 0 NA intron (ENSMUSG00000117419.1, intron 2 of 2) unprocessed_pseudogene-intron (ENSMUSG00000117419.1, intron 2 of 2) 1258 ENSMUSG00000117419.1 ENSMUSG00000117419 ENSMUST00000234371 Gm7930 unprocessed_pseudogene Interval_16666 chr10 66930583 66931736 + 0 NA Intergenic Intergenic 10857 ENSMUSG00000097921.2 ENSMUSG00000097921 ENSMUST00000181018 Gm26576 lincRNA Interval_135220 chr6 37621542 37622494 + 0 NA Intergenic Intergenic 65177 ENSMUSG00000107035.1 ENSMUSG00000107035 ENSMUST00000201305 Ybx1-ps2 processed_pseudogene Interval_134402 chr6 28345329 28345867 + 0 NA intron (ENSMUSG00000039841.14, intron 1 of 6) protein_coding-intron (ENSMUSG00000039841.14, intron 1 of 6) 17567 ENSMUSG00000083107.1 ENSMUSG00000083107 ENSMUST00000117943 Gm5303 processed_pseudogene Interval_171957 chr9 122940667 122940855 + 0 NA exon (ENSMUSG00000111163.1, exon 2 of 2) transcribed_unprocessed_pseudogene-exon (ENSMUSG00000111163.1, exon 2 of 2) -1769 ENSMUSG00000111428.1 ENSMUSG00000111428 ENSMUST00000214278 Gm47146 transcribed_processed_pseudogene Interval_9224 chr1 155217714 155219085 + 0 NA intron (ENSMUSG00000033722.9, intron 1 of 2) protein_coding-intron (ENSMUSG00000033722.9, intron 4 of 6) 7026 ENSMUSG00000033722.9 ENSMUSG00000033722 ENSMUST00000188492 BC034090 protein_coding Interval_111789 chr4 29118272 29118544 + 0 NA Intergenic Intergenic -7538 ENSMUSG00000080911.1 ENSMUSG00000080911 ENSMUST00000121660 Gm11918 processed_pseudogene Interval_144980 chr7 29244295 29244980 + 0 NA exon (ENSMUSG00000030588.12, exon 4 of 8) protein_coding-exon (ENSMUSG00000030588.12, exon 4 of 8) 3701 ENSMUSG00000030587.5 ENSMUSG00000030587 ENSMUST00000151339 2200002D01Rik protein_coding Interval_171607 chr9 119504988 119505628 + 0 NA intron (ENSMUSG00000032511.17, intron 20 of 27) protein_coding-intron (ENSMUSG00000032511.17, intron 19 of 26) 58195 ENSMUSG00000032511.17 ENSMUSG00000032511 ENSMUST00000138934 Scn5a protein_coding Interval_51279 chr14 25707690 25708011 + 0 NA promoter-TSS (ENSMUSG00000104183.1) TEC-promoter-TSS (ENSMUSG00000104183.1) -577 ENSMUSG00000104183.1 ENSMUSG00000104183 ENSMUST00000193604 1700054O19Rik TEC Interval_76120 chr17 75128425 75128632 + 0 NA intron (ENSMUSG00000001870.16, intron 3 of 34) protein_coding-intron (ENSMUSG00000001870.16, intron 3 of 33) -36679 ENSMUSG00000084025.1 ENSMUSG00000084025 ENSMUST00000120159 Gm6276 processed_pseudogene Interval_131036 chr5 134694989 134695769 + 0 NA Intergenic Intergenic 18889 ENSMUSG00000072573.2 ENSMUSG00000072573 ENSMUST00000100641 Gm10369 antisense Interval_171643 chr9 119894877 119895939 + 0 NA promoter-TSS (ENSMUSG00000097223.2) bidirectional_promoter_lncRNA-promoter-TSS (ENSMUSG00000097223.2) -563 ENSMUSG00000097223.2 ENSMUSG00000097223 ENSMUST00000180676 Gm2449 bidirectional_promoter_lncRNA Interval_144375 chr7 24770089 24771850 + 0 NA Intergenic Intergenic -6312 ENSMUSG00000054169.7 ENSMUSG00000054169 ENSMUST00000206380 Ceacam10 protein_coding Interval_134915 chr6 33544895 33545180 + 0 NA intron (ENSMUSG00000029763.17, intron 9 of 12) protein_coding-intron (ENSMUSG00000029763.17, intron 9 of 17) 112029 ENSMUSG00000107358.1 ENSMUSG00000107358 ENSMUST00000201039 Gm43168 TEC Interval_55909 chr14 101967175 101967400 + 0 NA Intergenic Intergenic 15476 ENSMUSG00000115584.1 ENSMUSG00000115584 ENSMUST00000226515 Gm5854 processed_pseudogene Interval_106790 chr3 100859446 100859673 + 0 NA intron (ENSMUSG00000051076.8, intron 1 of 5) protein_coding-intron (ENSMUSG00000051076.8, intron 1 of 5) 34100 ENSMUSG00000051076.8 ENSMUSG00000051076 ENSMUST00000054791 Vtcn1 protein_coding Interval_11843 chr1 186225955 186226254 + 0 NA Intergenic Intergenic 43847 ENSMUSG00000102790.1 ENSMUSG00000102790 ENSMUST00000193401 Gm37272 TEC Interval_98405 chr2 152114295 152115878 + 0 NA Intergenic Intergenic 9570 ENSMUSG00000032802.8 ENSMUSG00000032802 ENSMUST00000041500 Srxn1 protein_coding Interval_96240 chr2 120876794 120877313 + 0 NA exon (ENSMUSG00000027272.5, exon 40 of 47) protein_coding-exon (ENSMUSG00000027272.5, exon 40 of 47) 10725 ENSMUSG00000087519.8 ENSMUSG00000087519 ENSMUST00000171483 AV039307 processed_transcript Interval_143126 chr7 3475021 3477545 + 0 NA Intergenic Intergenic 14796 ENSMUSG00000107480.1 ENSMUSG00000107480 ENSMUST00000203093 Gm44165 TEC Interval_163810 chr9 26733202 26734490 + 0 NA promoter-TSS (ENSMUSG00000045994.17) protein_coding-promoter-TSS (ENSMUSG00000045994.17) 43 ENSMUSG00000045994.17 ENSMUSG00000045994 ENSMUST00000159527 B3gat1 protein_coding Interval_101371 chr2 180847975 180848462 + 0 NA intron (ENSMUSG00000085728.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000086166.1, intron 1 of 3) 566 ENSMUSG00000085728.1 ENSMUSG00000085728 ENSMUST00000146224 Gm14339 lincRNA Interval_63233 chr15 99857187 99858086 + 0 NA intron (ENSMUSG00000023022.14, intron 1 of 1) protein_coding-intron (ENSMUSG00000023022.14, intron 1 of 10) 17035 ENSMUSG00000023022.14 ENSMUSG00000023022 ENSMUST00000171450 Lima1 protein_coding Interval_135734 chr6 46064598 46064965 + 0 NA intron (ENSMUSG00000039419.17, intron 8 of 23) protein_coding-intron (ENSMUSG00000039419.17, intron 8 of 23) -7628 ENSMUSG00000107782.1 ENSMUSG00000107782 ENSMUST00000204405 Gm43888 TEC Interval_11261 chr1 180559509 180560175 + 0 NA Intergenic Intergenic -27359 ENSMUSG00000098926.1 ENSMUSG00000098926 ENSMUST00000183443 Mir6904 miRNA Interval_72748 chr17 31905690 31905916 + 0 NA Intergenic Intergenic 3226 ENSMUSG00000117879.1 ENSMUSG00000117879 ENSMUST00000235350 2310015A16Rik lincRNA Interval_42202 chr13 9826096 9827426 + 0 NA Intergenic Intergenic 6250 ENSMUSG00000113754.1 ENSMUSG00000113754 ENSMUST00000223507 Gm47401 processed_pseudogene Interval_140319 chr6 116456304 116456651 + 0 NA intron (ENSMUSG00000025701.12, intron 1 of 11) protein_coding-intron (ENSMUSG00000025701.12, intron 1 of 13) 4547 ENSMUSG00000025701.12 ENSMUSG00000025701 ENSMUST00000167174 Alox5 protein_coding Interval_31320 chr11 99824581 99825189 + 0 NA Intergenic Intergenic -9219 ENSMUSG00000078258.1 ENSMUSG00000078258 ENSMUST00000105055 Gm11564 protein_coding Interval_100588 chr2 170287069 170288596 + 0 NA Intergenic Intergenic 2797 ENSMUSG00000084013.1 ENSMUSG00000084013 ENSMUST00000118388 Gm14270 processed_pseudogene Interval_105273 chr3 84435374 84435971 + 0 NA Intergenic Intergenic 44721 ENSMUSG00000041842.15 ENSMUSG00000041842 ENSMUST00000131065 Fhdc1 protein_coding Interval_40969 chr12 110323816 110324137 + 0 NA Intergenic Intergenic -1409 ENSMUSG00000114183.1 ENSMUSG00000114183 ENSMUST00000222991 Gm47195 processed_pseudogene Interval_40887 chr12 109102165 109102374 + 0 NA Intergenic Intergenic 4042 ENSMUSG00000113306.1 ENSMUSG00000113306 ENSMUST00000223357 Mif-ps7 processed_pseudogene Interval_10867 chr1 176348217 176348610 + 0 NA Intergenic Intergenic -8770 ENSMUSG00000102446.1 ENSMUSG00000102446 ENSMUST00000193904 Gm17965 processed_pseudogene Interval_137420 chr6 72149752 72150176 + 0 NA intron (ENSMUSG00000056091.12, intron 6 of 6) protein_coding-intron (ENSMUSG00000056091.12, intron 6 of 6) -12885 ENSMUSG00000108371.1 ENSMUSG00000108371 ENSMUST00000205674 Gm38832 lincRNA Interval_140087 chr6 113972237 113972690 + 0 NA intron (ENSMUSG00000030302.16, intron 2 of 3) protein_coding-intron (ENSMUSG00000030302.16, intron 2 of 21) -32326 ENSMUSG00000087083.2 ENSMUSG00000087083 ENSMUST00000138670 Gm15083 antisense Interval_98029 chr2 146916170 146916414 + 0 NA intron (ENSMUSG00000074749.10, intron 6 of 13) protein_coding-intron (ENSMUSG00000074749.10, intron 6 of 13) 60383 ENSMUSG00000074749.10 ENSMUSG00000074749 ENSMUST00000135595 Kiz protein_coding Interval_100630 chr2 170601089 170602146 + 0 NA exon (ENSMUSG00000043583.1, exon 1 of 2) protein_coding-exon (ENSMUSG00000043583.1, exon 1 of 2) 400 ENSMUSG00000043583.1 ENSMUSG00000043583 ENSMUST00000062355 4930470P17Rik protein_coding Interval_102032 chr3 15333930 15334178 + 0 NA Intergenic Intergenic -1752 ENSMUSG00000078783.1 ENSMUSG00000078783 ENSMUST00000108361 Gm9733 protein_coding Interval_100932 chr2 173449902 173450555 + 0 NA Intergenic Intergenic 55662 ENSMUSG00000086114.1 ENSMUSG00000086114 ENSMUST00000147357 Gm14642 lincRNA Interval_104110 chr3 58671317 58673065 + 0 NA Intergenic Intergenic -5625 ENSMUSG00000105336.1 ENSMUSG00000105336 ENSMUST00000200601 AU022133 processed_pseudogene Interval_4129 chr1 69847964 69848830 + 0 NA intron (ENSMUSG00000053153.14, intron 3 of 12) protein_coding-intron (ENSMUSG00000053153.14, intron 3 of 16) 73350 ENSMUSG00000089345.1 ENSMUSG00000089345 ENSMUST00000158720 Gm22665 misc_RNA Interval_93623 chr2 75078190 75079340 + 0 NA Intergenic Intergenic 59033 ENSMUSG00000087333.1 ENSMUSG00000087333 ENSMUST00000143898 Gm13652 lincRNA Interval_11648 chr1 183781501 183781712 + 0 NA intron (ENSMUSG00000103305.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000103305.1, intron 1 of 2) 32629 ENSMUSG00000103305.1 ENSMUSG00000103305 ENSMUST00000193310 Gm34068 lincRNA Interval_152060 chr7 128690336 128690643 + 0 NA intron (ENSMUSG00000042105.18, intron 2 of 5) protein_coding-intron (ENSMUSG00000042105.18, intron 15 of 19) 1954 ENSMUSG00000107062.1 ENSMUSG00000107062 ENSMUST00000202892 Gm43580 processed_pseudogene Interval_87531 chr19 53276881 53277262 + 0 NA Intergenic Intergenic 10440 ENSMUSG00000118350.1 ENSMUSG00000118350 ENSMUST00000237548 Gm36339 processed_pseudogene Interval_122271 chr5 20864682 20865173 + 0 NA intron (ENSMUSG00000039987.15, intron 1 of 5) protein_coding-intron (ENSMUSG00000039987.15, intron 1 of 17) 17118 ENSMUSG00000039987.15 ENSMUSG00000039987 ENSMUST00000156044 Phtf2 protein_coding Interval_95056 chr2 103556315 103557042 + 0 NA Intergenic Intergenic 9419 ENSMUSG00000081687.1 ENSMUSG00000081687 ENSMUST00000118456 Gm13996 processed_pseudogene Interval_162631 chr9 6981010 6981640 + 0 NA intron (ENSMUSG00000047193.16, intron 84 of 89) protein_coding-intron (ENSMUSG00000047193.16, intron 83 of 88) 136263 ENSMUSG00000047193.16 ENSMUSG00000047193 ENSMUST00000139115 Dync2h1 protein_coding Interval_102639 chr3 28755808 28756598 + 0 NA intron (ENSMUSG00000091329.2, intron 1 of 2) antisense-intron (ENSMUSG00000091329.2, intron 1 of 2) 9157 ENSMUSG00000070522.4 ENSMUSG00000070522 ENSMUST00000094335 Gm6505 processed_pseudogene Interval_145027 chr7 29496941 29497242 + 0 NA intron (ENSMUSG00000030583.16, intron 1 of 1) protein_coding-intron (ENSMUSG00000030583.16, intron 2 of 22) -27452 ENSMUSG00000074224.3 ENSMUSG00000074224 ENSMUST00000098602 4932431P20Rik transcribed_unitary_pseudogene Interval_156189 chr8 45814369 45815043 + 0 NA intron (ENSMUSG00000031626.18, intron 2 of 4) protein_coding-intron (ENSMUSG00000031626.18, intron 23 of 25) 4591 ENSMUSG00000085440.1 ENSMUSG00000085440 ENSMUST00000135116 Sorbs2os antisense Interval_121280 chr4 154681687 154683633 + 0 NA Intergenic Intergenic -14793 ENSMUSG00000051276.4 ENSMUSG00000051276 ENSMUST00000060062 Actrt2 protein_coding Interval_28970 chr11 79645724 79647011 + 0 NA intron (ENSMUSG00000017639.13, intron 3 of 14) protein_coding-intron (ENSMUSG00000017639.13, intron 3 of 14) -7239 ENSMUSG00000077574.1 ENSMUSG00000077574 ENSMUST00000104386 Gm24887 snRNA Interval_104697 chr3 69517121 69517544 + 0 NA intron (ENSMUSG00000027784.10, intron 2 of 3) protein_coding-intron (ENSMUSG00000027784.10, intron 2 of 3) 20119 ENSMUSG00000027784.10 ENSMUSG00000027784 ENSMUST00000128637 Ppm1l protein_coding Interval_144653 chr7 27345060 27345962 + 0 NA promoter-TSS (ENSMUSG00000089832.8) protein_coding-promoter-TSS (ENSMUSG00000089832.8) 10260 ENSMUSG00000089832.8 ENSMUSG00000089832 ENSMUST00000157078 Shkbp1 protein_coding Interval_81924 chr18 65921797 65922075 + 0 NA promoter-TSS (ENSMUSG00000117846.1) processed_pseudogene-promoter-TSS (ENSMUSG00000117846.1) 79 ENSMUSG00000117846.1 ENSMUSG00000117846 ENSMUST00000235500 Gm50118 processed_pseudogene Interval_66831 chr16 37960168 37960427 + 0 NA intron (ENSMUSG00000046961.8, intron 3 of 9) protein_coding-intron (ENSMUSG00000046961.8, intron 3 of 9) -19790 ENSMUSG00000065188.1 ENSMUSG00000065188 ENSMUST00000083254 Gm25140 snRNA Interval_50690 chr14 18281658 18282034 + 0 NA TTS (ENSMUSG00000021774.13) protein_coding-TTS (ENSMUSG00000021774.13) 10582 ENSMUSG00000021772.15 ENSMUSG00000021772 ENSMUST00000156186 Nkiras1 protein_coding Interval_159848 chr8 104344052 104344430 + 0 NA promoter-TSS (ENSMUSG00000031875.7) protein_coding-promoter-TSS (ENSMUSG00000031875.7) 3714 ENSMUSG00000031875.7 ENSMUSG00000031875 ENSMUST00000212734 Cmtm3 protein_coding Interval_72458 chr17 29928832 29929100 + 0 NA intron (ENSMUSG00000043557.16, intron 3 of 20) protein_coding-intron (ENSMUSG00000043557.16, intron 3 of 20) 38882 ENSMUSG00000086534.2 ENSMUSG00000086534 ENSMUST00000149552 Gm16758 antisense Interval_144906 chr7 28865593 28866570 + 0 NA TTS (ENSMUSG00000053522.11) protein_coding-TTS (ENSMUSG00000053522.11) 2228 ENSMUSG00000053522.11 ENSMUSG00000053522 ENSMUST00000128001 Lgals7 protein_coding Interval_46754 chr13 69984252 69984858 + 0 NA Intergenic Intergenic 23059 ENSMUSG00000113980.1 ENSMUSG00000113980 ENSMUST00000221449 Gm47655 processed_pseudogene Interval_77467 chr17 89238372 89238623 + 0 NA Intergenic Intergenic -37822 ENSMUSG00000032937.5 ENSMUSG00000032937 ENSMUST00000035701 Fshr protein_coding Interval_36799 chr12 54146686 54147904 + 0 NA Intergenic Intergenic -40410 ENSMUSG00000112549.1 ENSMUSG00000112549 ENSMUST00000219480 Gm35818 lincRNA Interval_121893 chr5 9228744 9229060 + 0 NA Intergenic Intergenic 32486 ENSMUSG00000080875.4 ENSMUSG00000080875 ENSMUST00000118351 Gm7332 processed_pseudogene Interval_24574 chr11 34738676 34739592 + 0 NA intron (ENSMUSG00000020143.15, intron 2 of 26) protein_coding-intron (ENSMUSG00000020143.15, intron 2 of 51) 84817 ENSMUSG00000069910.2 ENSMUSG00000069910 ENSMUST00000148387 Spdl1 protein_coding Interval_126901 chr5 96922157 96922420 + 0 NA promoter-TSS (ENSMUSG00000105283.1) lincRNA-promoter-TSS (ENSMUSG00000105283.1) -113 ENSMUSG00000105283.1 ENSMUSG00000105283 ENSMUST00000195935 Gm33370 lincRNA Interval_151349 chr7 121372011 121372422 + 0 NA intron (ENSMUSG00000108351.1, intron 1 of 2) antisense-intron (ENSMUSG00000108351.1, intron 1 of 2) -19643 ENSMUSG00000046321.8 ENSMUSG00000046321 ENSMUST00000084628 Hs3st2 protein_coding Interval_74501 chr17 52326823 52327023 + 0 NA TTS (ENSMUSG00000117076.1) lincRNA-TTS (ENSMUSG00000117076.1) 22356 ENSMUSG00000117076.1 ENSMUSG00000117076 ENSMUST00000232754 Gm41600 lincRNA Interval_3902 chr1 64655307 64656036 + 0 NA Intergenic Intergenic 5736 ENSMUSG00000100437.1 ENSMUSG00000100437 ENSMUST00000189284 Gm29152 lincRNA Interval_138568 chr6 89387181 89387833 + 0 NA intron (ENSMUSG00000030086.16, intron 5 of 6) protein_coding-intron (ENSMUSG00000030086.16, intron 6 of 7) 42367 ENSMUSG00000107570.1 ENSMUSG00000107570 ENSMUST00000204568 Gm44207 TEC Interval_46953 chr13 73714065 73714559 + 0 NA Intergenic Intergenic 10596 ENSMUSG00000021566.7 ENSMUSG00000021566 ENSMUST00000160958 Slc6a19os antisense Interval_79720 chr18 34719847 34721299 + 0 NA promoter-TSS (ENSMUSG00000024366.8) protein_coding-promoter-TSS (ENSMUSG00000024366.8) -186 ENSMUSG00000024366.8 ENSMUSG00000024366 ENSMUST00000025224 Gfra3 protein_coding Interval_76993 chr17 85441093 85441543 + 0 NA intron (ENSMUSG00000071037.6, intron 9 of 10) protein_coding-intron (ENSMUSG00000071037.6, intron 9 of 10) -57315 ENSMUSG00000097803.1 ENSMUSG00000097803 ENSMUST00000181130 Rpl31-ps16 processed_pseudogene Interval_37229 chr12 61632853 61633677 + 0 NA intron (ENSMUSG00000035653.16, intron 1 of 1) protein_coding-intron (ENSMUSG00000035653.16, intron 1 of 3) 53591 ENSMUSG00000113456.1 ENSMUSG00000113456 ENSMUST00000221346 Gm30738 processed_pseudogene Interval_123313 chr5 31320294 31321063 + 0 NA intron (ENSMUSG00000059434.9, intron 14 of 16) protein_coding-intron (ENSMUSG00000059434.9, intron 16 of 18) 23124 ENSMUSG00000059434.9 ENSMUSG00000059434 ENSMUST00000202242 Gckr protein_coding Interval_25494 chr11 49217033 49217256 + 0 NA exon (ENSMUSG00000046311.13, exon 2 of 2) protein_coding-exon (ENSMUSG00000046311.13, exon 2 of 2) 4456 ENSMUSG00000046311.13 ENSMUSG00000046311 ENSMUST00000061757 Zfp62 protein_coding Interval_124014 chr5 37240517 37240713 + 0 NA Intergenic Intergenic -6670 ENSMUSG00000029121.16 ENSMUSG00000029121 ENSMUST00000200834 Crmp1 protein_coding Interval_81063 chr18 53472172 53474106 + 0 NA exon (ENSMUSG00000069378.14, exon 1 of 7) protein_coding-exon (ENSMUSG00000069378.14, exon 1 of 7) 9556 ENSMUSG00000069378.14 ENSMUSG00000069378 ENSMUST00000115398 Prdm6 protein_coding Interval_64503 chr16 12794519 12794726 + 0 NA intron (ENSMUSG00000116520.1, intron 2 of 11) lincRNA-intron (ENSMUSG00000116520.1, intron 2 of 11) -5957 ENSMUSG00000101565.2 ENSMUSG00000101565 ENSMUST00000190074 1700003L19Rik lincRNA Interval_135718 chr6 44778548 44778817 + 0 NA Intergenic Intergenic -42889 ENSMUSG00000107845.1 ENSMUSG00000107845 ENSMUST00000205016 Gm44212 processed_pseudogene Interval_145808 chr7 39484595 39484817 + 0 NA Intergenic Intergenic -4732 ENSMUSG00000100490.1 ENSMUSG00000100490 ENSMUST00000189105 Gm28455 unprocessed_pseudogene Interval_39031 chr12 84569439 84572279 + 0 NA intron (ENSMUSG00000021239.12, intron 1 of 4) protein_coding-intron (ENSMUSG00000021239.12, intron 1 of 4) 1019 ENSMUSG00000021239.12 ENSMUSG00000021239 ENSMUST00000169934 Vsx2 protein_coding Interval_110985 chr4 11031405 11031673 + 0 NA Intergenic Intergenic -23612 ENSMUSG00000049969.3 ENSMUSG00000049969 ENSMUST00000137891 Plekhf2 protein_coding Interval_69257 chr16 91728210 91730038 + 0 NA promoter-TSS (ENSMUSG00000022957.20) protein_coding-promoter-TSS (ENSMUSG00000022957.20) -527 ENSMUSG00000058240.14 ENSMUSG00000058240 ENSMUST00000123751 Cryzl1 protein_coding Interval_71629 chr17 24981055 24981262 + 0 NA intron (ENSMUSG00000038002.9, intron 10 of 20) protein_coding-intron (ENSMUSG00000038002.9, intron 10 of 20) -20513 ENSMUSG00000024165.9 ENSMUSG00000024165 ENSMUST00000233481 Jpt2 protein_coding Interval_96793 chr2 128311883 128314297 + 0 NA exon (ENSMUSG00000074813.14, exon 1 of 1) lincRNA-exon (ENSMUSG00000074813.14, exon 1 of 1) -110564 ENSMUSG00000079053.3 ENSMUSG00000079053 ENSMUST00000131961 Gm14010 lincRNA Interval_168389 chr9 79961624 79962282 + 0 NA promoter-TSS (ENSMUSG00000034898.17) protein_coding-promoter-TSS (ENSMUSG00000034898.17) 15706 ENSMUSG00000034898.17 ENSMUSG00000034898 ENSMUST00000217264 Filip1 protein_coding Interval_23521 chr11 23102969 23104100 + 0 NA Intergenic Intergenic 35536 ENSMUSG00000085665.1 ENSMUSG00000085665 ENSMUST00000128996 Gm12059 processed_transcript Interval_85241 chr19 24123112 24123677 + 0 NA intron (ENSMUSG00000024812.11, intron 8 of 23) protein_coding-intron (ENSMUSG00000024812.11, intron 7 of 22) 23673 ENSMUSG00000024812.11 ENSMUSG00000024812 ENSMUST00000237550 Tjp2 protein_coding Interval_93463 chr2 73263552 73265071 + 0 NA Intergenic Intergenic -7655 ENSMUSG00000068859.5 ENSMUSG00000068859 ENSMUST00000147133 Sp9 protein_coding Interval_34528 chr12 4907021 4908660 + 0 NA promoter-TSS (ENSMUSG00000020634.12) protein_coding-promoter-TSS (ENSMUSG00000020634.12) -576 ENSMUSG00000020634.12 ENSMUSG00000020634 ENSMUST00000141360 Ubxn2a protein_coding Interval_114947 chr4 87461031 87461404 + 0 NA Intergenic Intergenic 28945 ENSMUSG00000093065.1 ENSMUSG00000093065 ENSMUST00000175324 Gm23154 miRNA Interval_167571 chr9 70530499 70531467 + 0 NA Intergenic Intergenic -6831 ENSMUSG00000064921.1 ENSMUSG00000064921 ENSMUST00000082987 Gm22229 snRNA Interval_60359 chr15 73156556 73157544 + 0 NA intron (ENSMUSG00000036698.11, intron 1 of 18) protein_coding-intron (ENSMUSG00000036698.11, intron 1 of 18) 20797 ENSMUSG00000036698.11 ENSMUSG00000036698 ENSMUST00000230464 Ago2 protein_coding Interval_118913 chr4 134426799 134427096 + 0 NA TTS (ENSMUSG00000037366.14) protein_coding-TTS (ENSMUSG00000037366.14) 23224 ENSMUSG00000087343.1 ENSMUSG00000087343 ENSMUST00000131110 1700021N21Rik antisense Interval_76329 chr17 79110979 79111276 + 0 NA Intergenic Intergenic -7383 ENSMUSG00000117054.1 ENSMUSG00000117054 ENSMUST00000232888 Gm49869 processed_pseudogene Interval_131518 chr5 137683889 137685207 + 0 NA TTS (ENSMUSG00000079163.3) lincRNA-TTS (ENSMUSG00000079163.3) 6203 ENSMUSG00000079163.3 ENSMUSG00000079163 ENSMUST00000126693 Gm15498 lincRNA Interval_86251 chr19 38086278 38087568 + 0 NA Intergenic Intergenic -10148 ENSMUSG00000054200.7 ENSMUSG00000054200 ENSMUST00000067098 Ffar4 protein_coding Interval_70691 chr17 13555843 13557071 + 0 NA intron (ENSMUSG00000117063.1, intron 1 of 4) lincRNA-intron (ENSMUSG00000117063.1, intron 1 of 4) -22288 ENSMUSG00000095184.1 ENSMUSG00000095184 ENSMUST00000101829 Gm26375 snRNA Interval_52660 chr14 48347919 48348534 + 0 NA Intergenic Intergenic 14389 ENSMUSG00000114991.1 ENSMUSG00000114991 ENSMUST00000228144 1700128I11Rik lincRNA Interval_29543 chr11 84794437 84795003 + 0 NA Intergenic Intergenic -16891 ENSMUSG00000087407.1 ENSMUSG00000087407 ENSMUST00000155046 Gm11431 lincRNA Interval_133819 chr6 12775630 12775892 + 0 NA Intergenic Intergenic -26508 ENSMUSG00000032625.14 ENSMUSG00000032625 ENSMUST00000119443 Thsd7a protein_coding Interval_30199 chr11 90464045 90464293 + 0 NA Intergenic Intergenic 53147 ENSMUSG00000083268.1 ENSMUSG00000083268 ENSMUST00000118146 Gm11511 processed_pseudogene Interval_138500 chr6 88758819 88759129 + 0 NA intron (ENSMUSG00000033174.17, intron 2 of 6) protein_coding-intron (ENSMUSG00000033174.17, intron 2 of 7) 16247 ENSMUSG00000107835.1 ENSMUSG00000107835 ENSMUST00000204286 Gm43999 TEC Interval_119619 chr4 138785455 138786126 + 0 NA Intergenic Intergenic 7896 ENSMUSG00000041202.12 ENSMUSG00000041202 ENSMUST00000105806 Pla2g2d protein_coding Interval_147797 chr7 73606423 73607391 + 0 NA Intergenic Intergenic -2041 ENSMUSG00000108724.1 ENSMUSG00000108724 ENSMUST00000206025 Gm44734 lincRNA Interval_119915 chr4 140900023 140900771 + 0 NA Intergenic Intergenic -18287 ENSMUSG00000064443.1 ENSMUSG00000064443 ENSMUST00000082509 Gm26226 snRNA Interval_38754 chr12 81933284 81933532 + 0 NA intron (ENSMUSG00000021140.9, intron 7 of 34) protein_coding-intron (ENSMUSG00000021140.9, intron 7 of 34) -39779 ENSMUSG00000021140.9 ENSMUSG00000021140 ENSMUST00000222468 Pcnx protein_coding Interval_154344 chr8 14878696 14880223 + 0 NA Intergenic Intergenic -9545 ENSMUSG00000026317.7 ENSMUSG00000026317 ENSMUST00000128839 Cln8 protein_coding Interval_9463 chr1 157423151 157423400 + 0 NA Intergenic Intergenic 10297 ENSMUSG00000049881.13 ENSMUSG00000049881 ENSMUST00000189791 2810025M15Rik transcribed_processed_pseudogene Interval_145776 chr7 38214934 38215960 + 0 NA Intergenic Intergenic 12569 ENSMUSG00000074170.5 ENSMUSG00000074170 ENSMUST00000098513 Plekhf1 protein_coding Interval_127686 chr5 106654919 106655251 + 0 NA exon (ENSMUSG00000104706.1, exon 1 of 1) TEC-exon (ENSMUSG00000104706.1, exon 1 of 1) 628 ENSMUSG00000104706.1 ENSMUSG00000104706 ENSMUST00000200044 Gm43421 TEC Interval_162516 chr9 3531423 3533363 + 0 NA promoter-TSS (ENSMUSG00000041624.10) protein_coding-promoter-TSS (ENSMUSG00000041624.10) -495 ENSMUSG00000041624.10 ENSMUSG00000041624 ENSMUST00000212705 Gucy1a2 protein_coding Interval_186 JH792828.1 250720 251461 + 0 NA NA NA NA NA Interval_119261 chr4 136526108 136527419 + 0 NA intron (ENSMUSG00000001089.14, intron 2 of 3) protein_coding-intron (ENSMUSG00000001089.14, intron 1 of 3) 25779 ENSMUSG00000036940.15 ENSMUSG00000036940 ENSMUST00000170979 Kdm1a protein_coding Interval_112859 chr4 45577461 45579177 + 0 NA Intergenic Intergenic 28302 ENSMUSG00000081559.3 ENSMUSG00000081559 ENSMUST00000119140 Gm12411 processed_pseudogene Interval_149580 chr7 99818212 99818406 + 0 NA intron (ENSMUSG00000035239.6, intron 2 of 2) protein_coding-intron (ENSMUSG00000035239.6, intron 2 of 2) 10108 ENSMUSG00000035239.6 ENSMUSG00000035239 ENSMUST00000036331 Neu3 protein_coding Interval_56286 chr14 116371414 116371853 + 0 NA intron (ENSMUSG00000022112.14, intron 7 of 7) protein_coding-intron (ENSMUSG00000022112.14, intron 7 of 7) -378582 ENSMUSG00000104296.1 ENSMUSG00000104296 ENSMUST00000193536 Gm38045 TEC Interval_74643 chr17 54230597 54230798 + 0 NA Intergenic Intergenic 7184 ENSMUSG00000102572.1 ENSMUSG00000102572 ENSMUST00000193122 Gm37966 TEC Interval_129413 chr5 119836943 119837482 + 0 NA intron (ENSMUSG00000018263.11, intron 2 of 3) protein_coding-intron (ENSMUSG00000018263.11, intron 2 of 8) 4544 ENSMUSG00000018263.11 ENSMUSG00000018263 ENSMUST00000202504 Tbx5 protein_coding Interval_72204 chr17 28575320 28576079 + 0 NA promoter-TSS (ENSMUSG00000062252.9) protein_coding-promoter-TSS (ENSMUSG00000062252.9) -61 ENSMUSG00000062252.9 ENSMUSG00000062252 ENSMUST00000232974 Lhfpl5 protein_coding Interval_20451 chr10 117688040 117689347 + 0 NA TTS (ENSMUSG00000020184.15) protein_coding-TTS (ENSMUSG00000020184.15) 12800 ENSMUSG00000020183.11 ENSMUSG00000020183 ENSMUST00000141991 Cpm protein_coding Interval_1607 chr1 29791228 29791488 + 0 NA Intergenic Intergenic -21796 ENSMUSG00000118548.1 ENSMUSG00000118548 ENSMUST00000239107 AC125120.1 processed_pseudogene Interval_72370 chr17 29444763 29445521 + 0 NA promoter-TSS (ENSMUSG00000117427.1) lincRNA-promoter-TSS (ENSMUSG00000117427.1) -10385 ENSMUSG00000117575.1 ENSMUSG00000117575 ENSMUST00000234181 Gm36486 processed_transcript Interval_137467 chr6 72637172 72637366 + 0 NA TTS (ENSMUSG00000072999.9) antisense-TTS (ENSMUSG00000072999.9) 1286 ENSMUSG00000102577.1 ENSMUSG00000102577 ENSMUST00000195777 Gm37969 TEC Interval_85619 chr19 29104584 29104857 + 0 NA intron (ENSMUSG00000024785.7, intron 1 of 8) protein_coding-intron (ENSMUSG00000024785.7, intron 1 of 8) 3345 ENSMUSG00000024785.7 ENSMUSG00000024785 ENSMUST00000235900 Rcl1 protein_coding Interval_23088 chr11 19861658 19861999 + 0 NA Intergenic Intergenic 78176 ENSMUSG00000081820.1 ENSMUSG00000081820 ENSMUST00000120073 Gm12029 processed_pseudogene Interval_3437 chr1 58358578 58359845 + 0 NA intron (ENSMUSG00000079554.2, intron 34 of 35) protein_coding-intron (ENSMUSG00000079554.2, intron 34 of 35) 26923 ENSMUSG00000103839.1 ENSMUSG00000103839 ENSMUST00000194925 Gm37607 TEC Interval_174633 chrX 160659572 160659779 + 0 NA intron (ENSMUSG00000062168.12, intron 5 of 7) protein_coding-intron (ENSMUSG00000062168.12, intron 6 of 15) 54503 ENSMUSG00000083945.1 ENSMUSG00000083945 ENSMUST00000122459 Gm15242 processed_pseudogene Interval_14257 chr10 29866536 29867209 + 0 NA Intergenic Intergenic 85461 ENSMUSG00000111427.1 ENSMUSG00000111427 ENSMUST00000215034 Gm6390 processed_pseudogene Interval_145243 chr7 30859377 30861522 + 0 NA exon (ENSMUSG00000044453.5, exon 1 of 1) protein_coding-exon (ENSMUSG00000044453.5, exon 1 of 1) 1115 ENSMUSG00000044453.5 ENSMUSG00000044453 ENSMUST00000052700 Ffar1 protein_coding Interval_143110 chr6 149414448 149415199 + 0 NA exon (ENSMUSG00000003452.15, exon 1 of 1) protein_coding-exon (ENSMUSG00000003452.15, exon 1 of 1) 5937 ENSMUSG00000003452.15 ENSMUSG00000003452 ENSMUST00000140759 Bicd1 protein_coding Interval_80266 chr18 38628269 38629319 + 0 NA intron (ENSMUSG00000118257.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000118257.1, intron 2 of 3) 1507 ENSMUSG00000118257.1 ENSMUSG00000118257 ENSMUST00000134388 9630014M24Rik lincRNA Interval_61304 chr15 80710646 80712146 + 0 NA promoter-TSS (ENSMUSG00000047888.10) protein_coding-promoter-TSS (ENSMUSG00000047888.10) -875 ENSMUSG00000116480.1 ENSMUSG00000116480 ENSMUST00000230620 Gm49512 sense_intronic Interval_161125 chr8 117634069 117635078 + 0 NA intron (ENSMUSG00000034330.10, intron 32 of 32) protein_coding-intron (ENSMUSG00000034330.10, intron 32 of 32) 39116 ENSMUSG00000034308.13 ENSMUSG00000034308 ENSMUST00000174450 Sdr42e1 protein_coding Interval_89755 chr2 25236746 25236950 + 0 NA promoter-TSS (ENSMUSG00000089953.3) protein_coding-promoter-TSS (ENSMUSG00000089953.3) -159 ENSMUSG00000089953.3 ENSMUSG00000089953 ENSMUST00000205192 Rnf224 protein_coding Interval_129864 chr5 122798439 122800164 + 0 NA TTS (ENSMUSG00000029472.13) protein_coding-TTS (ENSMUSG00000029472.13) 19776 ENSMUSG00000105613.1 ENSMUSG00000105613 ENSMUST00000199279 Gm43684 TEC Interval_166151 chr9 57085792 57086057 + 0 NA promoter-TSS (ENSMUSG00000042557.14) protein_coding-promoter-TSS (ENSMUSG00000042557.14) 13884 ENSMUSG00000042557.14 ENSMUSG00000042557 ENSMUST00000167963 Sin3a protein_coding Interval_16098 chr10 60726748 60727961 + 0 NA intron (ENSMUSG00000020100.15, intron 3 of 5) protein_coding-intron (ENSMUSG00000020100.15, intron 3 of 5) 25429 ENSMUSG00000020100.15 ENSMUSG00000020100 ENSMUST00000144989 Slc29a3 protein_coding Interval_172270 chrX 12146128 12146511 + 0 NA intron (ENSMUSG00000040363.15, intron 1 of 4) protein_coding-intron (ENSMUSG00000040363.15, intron 1 of 13) 14027 ENSMUSG00000040363.15 ENSMUSG00000040363 ENSMUST00000209776 Bcor protein_coding Interval_45998 chr13 59883582 59884519 + 0 NA Intergenic Intergenic 10408 ENSMUSG00000114669.1 ENSMUSG00000114669 ENSMUST00000225895 Gm48384 lincRNA Interval_39368 chr12 86942162 86943625 + 0 NA Intergenic Intergenic -9764 ENSMUSG00000034157.12 ENSMUSG00000034157 ENSMUST00000191463 Cipc protein_coding Interval_157784 chr8 73157554 73158259 + 0 NA intron (ENSMUSG00000004383.18, intron 3 of 15) protein_coding-intron (ENSMUSG00000004383.18, intron 2 of 14) 17352 ENSMUSG00000089447.1 ENSMUSG00000089447 ENSMUST00000158822 Gm22532 snoRNA Interval_136621 chr6 56765054 56765414 + 0 NA Intergenic Intergenic 32045 ENSMUSG00000059486.11 ENSMUSG00000059486 ENSMUST00000124994 Kbtbd2 protein_coding Interval_91666 chr2 46461916 46462440 + 0 NA Intergenic Intergenic -19468 ENSMUSG00000086644.1 ENSMUSG00000086644 ENSMUST00000123911 Gm13470 lincRNA Interval_149798 chr7 101635243 101635662 + 0 NA Intergenic Intergenic -28321 ENSMUSG00000001829.17 ENSMUSG00000001829 ENSMUST00000150832 Clpb protein_coding Interval_23956 chr11 28817697 28818349 + 0 NA Intergenic Intergenic 54295 ENSMUSG00000065415.1 ENSMUSG00000065415 ENSMUST00000083481 Mir217 miRNA Interval_2462 chr1 39530236 39530762 + 0 NA Intergenic Intergenic -9535 ENSMUSG00000003135.15 ENSMUSG00000003135 ENSMUST00000195567 Cnot11 protein_coding Interval_24986 chr11 42534520 42534712 + 0 NA intron (ENSMUSG00000007653.12, intron 5 of 9) protein_coding-intron (ENSMUSG00000007653.12, intron 6 of 9) 113266 ENSMUSG00000007653.12 ENSMUSG00000007653 ENSMUST00000192403 Gabrb2 protein_coding Interval_61350 chr15 80988534 80988724 + 0 NA intron (ENSMUSG00000042303.19, intron 1 of 4) protein_coding-intron (ENSMUSG00000042303.19, intron 1 of 4) 10740 ENSMUSG00000042303.19 ENSMUSG00000042303 ENSMUST00000156783 Sgsm3 protein_coding Interval_29184 chr11 81215092 81215308 + 0 NA intron (ENSMUSG00000020704.13, intron 1 of 9) protein_coding-intron (ENSMUSG00000020704.13, intron 1 of 9) 142797 ENSMUSG00000085130.1 ENSMUSG00000085130 ENSMUST00000150536 Gm11417 antisense Interval_99241 chr2 158340023 158340436 + 0 NA Intergenic Intergenic 16325 ENSMUSG00000065362.1 ENSMUSG00000065362 ENSMUST00000083428 Gm24411 snoRNA Interval_28663 chr11 77637566 77637892 + 0 NA Intergenic Intergenic -2125 ENSMUSG00000082646.1 ENSMUSG00000082646 ENSMUST00000121688 Gm12732 processed_pseudogene Interval_93155 chr2 70699492 70699813 + 0 NA intron (ENSMUSG00000014959.12, intron 8 of 9) protein_coding-intron (ENSMUSG00000014959.12, intron 8 of 9) 11839 ENSMUSG00000014959.12 ENSMUSG00000014959 ENSMUST00000136485 Gorasp2 protein_coding Interval_39445 chr12 87442256 87444454 + 0 NA promoter-TSS (ENSMUSG00000021040.15) protein_coding-promoter-TSS (ENSMUSG00000021040.15) -541 ENSMUSG00000021040.15 ENSMUSG00000021040 ENSMUST00000160880 Slirp protein_coding Interval_30786 chr11 96447838 96448602 + 0 NA TTS (ENSMUSG00000075586.4) processed_transcript-TTS (ENSMUSG00000075586.4) 16327 ENSMUSG00000075586.4 ENSMUSG00000075586 ENSMUST00000153012 Gm11529 processed_transcript Interval_28316 chr11 75164831 75167440 + 0 NA exon (ENSMUSG00000043099.4, exon 2 of 2) protein_coding-exon (ENSMUSG00000043099.4, exon 2 of 2) 2011 ENSMUSG00000043099.4 ENSMUSG00000043099 ENSMUST00000131720 Hic1 protein_coding Interval_29345 chr11 83352812 83353265 + 0 NA intron (ENSMUSG00000035152.14, intron 14 of 20) protein_coding-intron (ENSMUSG00000035152.14, intron 14 of 21) 13963 ENSMUSG00000077217.1 ENSMUSG00000077217 ENSMUST00000104029 Gm23951 snoRNA Interval_56605 chr14 120805717 120807796 + 0 NA promoter-TSS (ENSMUSG00000115835.1) lincRNA-promoter-TSS (ENSMUSG00000115835.1) -472 ENSMUSG00000115835.1 ENSMUSG00000115835 ENSMUST00000227862 Gm41253 lincRNA Interval_90983 chr2 33917895 33918964 + 0 NA Intergenic Intergenic 23716 ENSMUSG00000085987.2 ENSMUSG00000085987 ENSMUST00000134271 Gm13403 lincRNA Interval_115999 chr4 106886477 106886930 + 0 NA Intergenic Intergenic -38783 ENSMUSG00000086940.1 ENSMUSG00000086940 ENSMUST00000151369 Gm12746 lincRNA Interval_97016 chr2 130538826 130539380 + 0 NA intron (ENSMUSG00000027303.18, intron 11 of 11) protein_coding-intron (ENSMUSG00000027303.18, intron 10 of 20) -7359 ENSMUSG00000077004.1 ENSMUSG00000077004 ENSMUST00000103816 Gm23876 miRNA Interval_133115 chr5 149941728 149942217 + 0 NA Intergenic Intergenic 31720 ENSMUSG00000107112.1 ENSMUSG00000107112 ENSMUST00000201713 Gm36241 processed_transcript Interval_75286 chr17 65704040 65704404 + 0 NA intron (ENSMUSG00000056515.9, intron 3 of 6) protein_coding-intron (ENSMUSG00000056515.9, intron 3 of 6) -42644 ENSMUSG00000117114.1 ENSMUSG00000117114 ENSMUST00000233942 Gm49867 processed_pseudogene Interval_98292 chr2 150848750 150848959 + 0 NA intron (ENSMUSG00000032046.15, intron 2 of 12) protein_coding-intron (ENSMUSG00000032046.15, intron 2 of 12) -6284 ENSMUSG00000032046.15 ENSMUSG00000032046 ENSMUST00000129228 Abhd12 protein_coding Interval_89214 chr2 18100670 18101199 + 0 NA intron (ENSMUSG00000026743.16, intron 4 of 23) protein_coding-intron (ENSMUSG00000026743.16, intron 3 of 22) 28643 ENSMUSG00000092814.1 ENSMUSG00000092814 ENSMUST00000175073 Gm23638 miRNA Interval_4275 chr1 72327869 72328518 + 0 NA intron (ENSMUSG00000026187.9, intron 8 of 20) protein_coding-intron (ENSMUSG00000026187.9, intron 8 of 20) 20766 ENSMUSG00000026187.9 ENSMUSG00000026187 ENSMUST00000027379 Xrcc5 protein_coding Interval_103220 chr3 37062949 37064178 + 0 NA promoter-TSS (ENSMUSG00000027719.15) protein_coding-promoter-TSS (ENSMUSG00000027719.15) -3533 ENSMUSG00000086090.1 ENSMUSG00000086090 ENSMUST00000139667 Gm12531 antisense Interval_66647 chr16 35853983 35854539 + 0 NA intron (ENSMUSG00000034422.14, intron 6 of 16) protein_coding-intron (ENSMUSG00000034422.14, intron 6 of 16) 13690 ENSMUSG00000116639.1 ENSMUSG00000116639 ENSMUST00000231830 Gm49730 TEC Interval_165136 chr9 44752511 44752818 + 0 NA TTS (ENSMUSG00000111345.1) TEC-TTS (ENSMUSG00000111345.1) 1187 ENSMUSG00000111345.1 ENSMUSG00000111345 ENSMUST00000217425 Gm48562 TEC Interval_18328 chr10 84955754 84955969 + 0 NA intron (ENSMUSG00000035620.15, intron 2 of 7) protein_coding-intron (ENSMUSG00000035620.15, intron 3 of 9) 18468 ENSMUSG00000035620.15 ENSMUSG00000035620 ENSMUST00000214820 Ric8b protein_coding Interval_71945 chr17 27142128 27142685 + 0 NA Intergenic Intergenic 2857 ENSMUSG00000118010.1 ENSMUSG00000118010 ENSMUST00000235247 Gm50316 lincRNA Interval_156208 chr8 46036618 46036859 + 0 NA intron (ENSMUSG00000038291.16, intron 14 of 16) protein_coding-intron (ENSMUSG00000038291.16, intron 16 of 18) 26127 ENSMUSG00000031637.13 ENSMUSG00000031637 ENSMUST00000132341 Lrp2bp protein_coding Interval_154828 chr8 23929112 23929575 + 0 NA intron (ENSMUSG00000037492.16, intron 6 of 7) protein_coding-intron (ENSMUSG00000037492.16, intron 5 of 6) -176578 ENSMUSG00000109158.1 ENSMUSG00000109158 ENSMUST00000209073 Gm45166 TEC Interval_145528 chr7 35381474 35383430 + 0 NA promoter-TSS (ENSMUSG00000030494.13) protein_coding-promoter-TSS (ENSMUSG00000030494.13) -113 ENSMUSG00000030494.13 ENSMUSG00000030494 ENSMUST00000187997 Rhpn2 protein_coding Interval_97238 chr2 132512882 132513127 + 0 NA TTS (ENSMUSG00000086379.7) antisense-TTS (ENSMUSG00000086379.7) -11856 ENSMUSG00000086250.1 ENSMUSG00000086250 ENSMUST00000134264 Gm14095 lincRNA Interval_161946 chr8 123970806 123971002 + 0 NA intron (ENSMUSG00000031974.8, intron 2 of 12) protein_coding-intron (ENSMUSG00000031974.8, intron 2 of 12) 12218 ENSMUSG00000031974.8 ENSMUSG00000031974 ENSMUST00000075578 Abcb10 protein_coding Interval_94751 chr2 94001040 94002927 + 0 NA intron (ENSMUSG00000040174.14, intron 7 of 8) protein_coding-intron (ENSMUSG00000040174.14, intron 6 of 9) -5629 ENSMUSG00000098004.1 ENSMUSG00000098004 ENSMUST00000183110 Gm27027 protein_coding Interval_4270 chr1 72283874 72284798 + 0 NA promoter-TSS (ENSMUSG00000026188.11) protein_coding-promoter-TSS (ENSMUSG00000026188.11) -59 ENSMUSG00000026188.11 ENSMUSG00000026188 ENSMUST00000141783 Tmem169 protein_coding Interval_52086 chr14 35575555 35575773 + 0 NA intron (ENSMUSG00000041078.7, intron 1 of 1) protein_coding-intron (ENSMUSG00000041078.7, intron 15 of 15) 5711 ENSMUSG00000098696.1 ENSMUSG00000098696 ENSMUST00000184321 Gm27617 misc_RNA Interval_95470 chr2 109896092 109897165 + 0 NA exon (ENSMUSG00000027162.7, exon 4 of 4) protein_coding-exon (ENSMUSG00000027162.7, exon 4 of 4) 5758 ENSMUSG00000027162.7 ENSMUSG00000027162 ENSMUST00000151163 Lin7c protein_coding Interval_140465 chr6 118438011 118439478 + 0 NA intron (ENSMUSG00000030145.14, intron 2 of 4) protein_coding-intron (ENSMUSG00000030145.14, intron 3 of 5) 9574 ENSMUSG00000093079.1 ENSMUSG00000093079 ENSMUST00000175338 Gm25953 miRNA Interval_71802 chr17 26187973 26188298 + 0 NA promoter-TSS (ENSMUSG00000024182.16) protein_coding-promoter-TSS (ENSMUSG00000024182.16) -18 ENSMUSG00000024182.16 ENSMUSG00000024182 ENSMUST00000169268 Axin1 protein_coding Interval_56281 chr14 116233992 116234269 + 0 NA intron (ENSMUSG00000022112.14, intron 7 of 7) protein_coding-intron (ENSMUSG00000022112.14, intron 7 of 7) -362852 ENSMUSG00000093497.1 ENSMUSG00000093497 ENSMUST00000176344 Gm20713 processed_transcript Interval_49872 chr13 117447807 117448087 + 0 NA Intergenic Intergenic 11128 ENSMUSG00000114358.1 ENSMUSG00000114358 ENSMUST00000223786 Gm5200 processed_pseudogene Interval_132735 chr5 147467075 147467412 + 0 NA intron (ENSMUSG00000029647.15, intron 4 of 18) protein_coding-intron (ENSMUSG00000029647.15, intron 4 of 18) 27853 ENSMUSG00000107085.1 ENSMUSG00000107085 ENSMUST00000202594 Gm42883 processed_pseudogene Interval_35979 chr12 33072486 33073410 + 0 NA intron (ENSMUSG00000035860.9, intron 4 of 19) protein_coding-intron (ENSMUSG00000035860.9, intron 4 of 19) 10507 ENSMUSG00000092931.2 ENSMUSG00000092931 ENSMUST00000175190 Gm22904 miRNA Interval_4005 chr1 66173357 66176076 + 0 NA promoter-TSS (ENSMUSG00000015222.18) protein_coding-promoter-TSS (ENSMUSG00000015222.18) 111751 ENSMUSG00000083289.1 ENSMUSG00000083289 ENSMUST00000118496 Gm8812 processed_pseudogene Interval_154932 chr8 25152553 25154133 + 0 NA Intergenic Intergenic 5890 ENSMUSG00000099142.1 ENSMUSG00000099142 ENSMUST00000184998 Mir8108 miRNA Interval_106992 chr3 102673478 102674272 + 0 NA Intergenic Intergenic 12842 ENSMUSG00000104685.1 ENSMUSG00000104685 ENSMUST00000198096 Gm19202 processed_pseudogene Interval_147899 chr7 75308050 75309603 + 0 NA promoter-TSS (ENSMUSG00000053025.13) protein_coding-promoter-TSS (ENSMUSG00000053025.13) 130 ENSMUSG00000097247.2 ENSMUSG00000097247 ENSMUST00000181846 1500012K07Rik processed_transcript Interval_97488 chr2 137371647 137371861 + 0 NA Intergenic Intergenic 83251 ENSMUSG00000085504.1 ENSMUSG00000085504 ENSMUST00000130262 Gm14055 lincRNA Interval_157480 chr8 70629516 70632265 + 0 NA intron (ENSMUSG00000038508.7, intron 2 of 2) protein_coding-intron (ENSMUSG00000038508.7, intron 1 of 1) 1566 ENSMUSG00000038508.7 ENSMUSG00000038508 ENSMUST00000110103 Gdf15 protein_coding Interval_59729 chr15 58933127 58934108 + 0 NA promoter-TSS (ENSMUSG00000022354.4) protein_coding-promoter-TSS (ENSMUSG00000022354.4) -191 ENSMUSG00000022354.4 ENSMUSG00000022354 ENSMUST00000228595 Ndufb9 protein_coding Interval_61074 chr15 79082463 79083135 + 0 NA promoter-TSS (ENSMUSG00000033047.5) protein_coding-promoter-TSS (ENSMUSG00000033047.5) -250 ENSMUSG00000033047.5 ENSMUSG00000033047 ENSMUST00000230032 Eif3l protein_coding Interval_67727 chr16 56486231 56486934 + 0 NA intron (ENSMUSG00000035258.15, intron 1 of 35) protein_coding-intron (ENSMUSG00000035258.15, intron 1 of 39) 8682 ENSMUSG00000035258.15 ENSMUSG00000035258 ENSMUST00000096012 Abi3bp protein_coding Interval_101114 chr2 178074919 178075201 + 0 NA intron (ENSMUSG00000078861.8, intron 1 of 2) protein_coding-intron (ENSMUSG00000078861.8, intron 1 of 2) 3365 ENSMUSG00000078861.8 ENSMUSG00000078861 ENSMUST00000108923 Zfp931 protein_coding Interval_5515 chr1 89487111 89488056 + 0 NA intron (ENSMUSG00000055013.16, intron 1 of 16) protein_coding-intron (ENSMUSG00000055013.16, intron 1 of 17) 4145 ENSMUSG00000104114.1 ENSMUSG00000104114 ENSMUST00000192974 Gm37297 TEC Interval_7367 chr1 130549247 130551602 + 0 NA intron (ENSMUSG00000085526.1, intron 4 of 4) antisense-intron (ENSMUSG00000085526.1, intron 4 of 4) 45252 ENSMUSG00000064395.1 ENSMUSG00000064395 ENSMUST00000082461 Gm23623 snRNA Interval_74983 chr17 58945976 58946171 + 0 NA intron (ENSMUSG00000024227.14, intron 6 of 12) protein_coding-intron (ENSMUSG00000024227.14, intron 6 of 12) -52578 ENSMUSG00000024227.14 ENSMUSG00000024227 ENSMUST00000177360 Pdzph1 protein_coding Interval_132441 chr5 144933705 144934343 + 0 NA intron (ENSMUSG00000038780.14, intron 1 of 18) protein_coding-intron (ENSMUSG00000038780.14, intron 1 of 17) -36030 ENSMUSG00000038780.14 ENSMUSG00000038780 ENSMUST00000198621 Smurf1 protein_coding Interval_10675 chr1 172616940 172617592 + 0 NA Intergenic Intergenic -14719 ENSMUSG00000070504.9 ENSMUSG00000070504 ENSMUST00000193431 Fcrl6 protein_coding Interval_62482 chr15 93382465 93383159 + 0 NA Intergenic Intergenic 15489 ENSMUSG00000022635.9 ENSMUSG00000022635 ENSMUST00000159719 Zcrb1 protein_coding Interval_69561 chr16 94245545 94247299 + 0 NA promoter-TSS (ENSMUSG00000040820.16) protein_coding-promoter-TSS (ENSMUSG00000040820.16) -337 ENSMUSG00000040820.16 ENSMUSG00000040820 ENSMUST00000226249 Hlcs protein_coding Interval_44169 chr13 41456701 41459355 + 0 NA intron (ENSMUSG00000021365.15, intron 1 of 1) protein_coding-intron (ENSMUSG00000021365.15, intron 1 of 7) 19872 ENSMUSG00000114537.1 ENSMUSG00000114537 ENSMUST00000223906 Gm48569 TEC Interval_56849 chr14 122422142 122424083 + 0 NA Intergenic Intergenic 13783 ENSMUSG00000064052.3 ENSMUSG00000064052 ENSMUST00000238321 Gm5089 processed_transcript Interval_136589 chr6 56183486 56184152 + 0 NA intron (ENSMUSG00000004347.17, intron 4 of 19) protein_coding-intron (ENSMUSG00000004347.17, intron 2 of 18) -10788 ENSMUSG00000106152.1 ENSMUSG00000106152 ENSMUST00000198921 Gm44413 miRNA Interval_4971 chr1 83070145 83070470 + 0 NA Intergenic Intergenic 3205 ENSMUSG00000099691.1 ENSMUSG00000099691 ENSMUST00000190858 Gm29518 processed_pseudogene Interval_116606 chr4 116017090 116018684 + 0 NA promoter-TSS (ENSMUSG00000034171.13) protein_coding-promoter-TSS (ENSMUSG00000034171.13) -17950 ENSMUSG00000034171.13 ENSMUSG00000034171 ENSMUST00000150614 Faah protein_coding Interval_119151 chr4 135869377 135869552 + 0 NA exon (ENSMUSG00000028676.17, exon 6 of 6) protein_coding-exon (ENSMUSG00000028676.17, exon 6 of 6) 3597 ENSMUSG00000028675.12 ENSMUSG00000028675 ENSMUST00000180300 Pnrc2 protein_coding Interval_148016 chr7 78161119 78161343 + 0 NA Intergenic Intergenic 51468 ENSMUSG00000108630.1 ENSMUSG00000108630 ENSMUST00000205611 Gm44607 TEC Interval_39712 chr12 94378213 94378486 + 0 NA Intergenic Intergenic -318648 ENSMUSG00000113215.1 ENSMUSG00000113215 ENSMUST00000222410 Gm18749 processed_pseudogene Interval_124788 chr5 54034054 54035075 + 0 NA intron (ENSMUSG00000039156.19, intron 1 of 12) protein_coding-intron (ENSMUSG00000039156.19, intron 1 of 11) 60516 ENSMUSG00000107105.1 ENSMUSG00000107105 ENSMUST00000201566 Gm15820 processed_pseudogene Interval_153816 chr8 8968637 8970444 + 0 NA Intergenic Intergenic -36841 ENSMUSG00000109346.1 ENSMUSG00000109346 ENSMUST00000209045 Gm44515 lincRNA Interval_62788 chr15 96971797 96972516 + 0 NA Intergenic Intergenic 47795 ENSMUSG00000022464.14 ENSMUSG00000022464 ENSMUST00000230907 Slc38a4 protein_coding Interval_55273 chr14 79898184 79898876 + 0 NA promoter-TSS (ENSMUSG00000115190.1) lincRNA-promoter-TSS (ENSMUSG00000115190.1) 63 ENSMUSG00000115190.1 ENSMUSG00000115190 ENSMUST00000227349 Gm49542 lincRNA Interval_113598 chr4 56921341 56922058 + 0 NA intron (ENSMUSG00000055296.14, intron 6 of 16) protein_coding-intron (ENSMUSG00000055296.14, intron 7 of 17) 8057 ENSMUSG00000064595.1 ENSMUSG00000064595 ENSMUST00000082661 Gm22300 snoRNA Interval_60218 chr15 68240903 68241109 + 0 NA intron (ENSMUSG00000022335.17, intron 1 of 13) protein_coding-intron (ENSMUSG00000022335.17, intron 1 of 4) 17781 ENSMUSG00000022335.17 ENSMUSG00000022335 ENSMUST00000161139 Zfat protein_coding Interval_168986 chr9 90045466 90046430 + 0 NA Intergenic Intergenic -8606 ENSMUSG00000032359.14 ENSMUSG00000032359 ENSMUST00000151219 Ctsh protein_coding Interval_168917 chr9 88572425 88573201 + 0 NA Intergenic Intergenic -8334 ENSMUSG00000090693.4 ENSMUSG00000090693 ENSMUST00000216686 Trim43a protein_coding Interval_73410 chr17 37045472 37047600 + 0 NA promoter-TSS (ENSMUSG00000024462.17) protein_coding-promoter-TSS (ENSMUSG00000024462.17) -9176 ENSMUSG00000024462.17 ENSMUSG00000024462 ENSMUST00000174071 Gabbr1 protein_coding Interval_49021 chr13 106957644 106958656 + 0 NA TTS (ENSMUSG00000021693.20) protein_coding-TTS (ENSMUSG00000021693.20) 10995 ENSMUSG00000021692.9 ENSMUSG00000021692 ENSMUST00000223870 Dimt1 protein_coding Interval_38993 chr12 84346617 84347784 + 0 NA intron (ENSMUSG00000021234.9, intron 6 of 6) protein_coding-intron (ENSMUSG00000021234.9, intron 7 of 7) 14592 ENSMUSG00000021234.9 ENSMUSG00000021234 ENSMUST00000126752 Fam161b protein_coding Interval_81501 chr18 61215529 61217531 + 0 NA Intergenic Intergenic -5173 ENSMUSG00000034320.14 ENSMUSG00000034320 ENSMUST00000181997 Slc26a2 protein_coding Interval_15852 chr10 58394181 58394721 + 0 NA promoter-TSS (ENSMUSG00000019920.18) protein_coding-promoter-TSS (ENSMUSG00000019920.18) 22997 ENSMUSG00000019920.18 ENSMUSG00000019920 ENSMUST00000148799 Lims1 protein_coding Interval_66181 chr16 32177007 32177543 + 0 NA Intergenic Intergenic -2548 ENSMUSG00000075269.5 ENSMUSG00000075269 ENSMUST00000099990 Bex6 protein_coding Interval_1865 chr1 34200444 34201128 + 0 NA intron (ENSMUSG00000026131.20, intron 28 of 83) protein_coding-intron (ENSMUSG00000026131.20, intron 43 of 97) -22340 ENSMUSG00000096992.3 ENSMUSG00000096992 ENSMUST00000187268 Gm26788 processed_transcript Interval_122564 chr5 23822555 23822928 + 0 NA TTS (ENSMUSG00000118636.1) transcribed_unitary_pseudogene-TTS (ENSMUSG00000118636.1) 837 ENSMUSG00000118636.1 ENSMUSG00000118636 ENSMUST00000239171 AC117663.3 transcribed_unitary_pseudogene Interval_91349 chr2 38002776 38003732 + 0 NA intron (ENSMUSG00000035392.17, intron 7 of 9) protein_coding-intron (ENSMUSG00000035392.17, intron 10 of 21) 15913 ENSMUSG00000107586.1 ENSMUSG00000107586 ENSMUST00000204461 Gm44283 TEC Interval_137657 chr6 78026946 78027191 + 0 NA Intergenic Intergenic 42519 ENSMUSG00000097964.1 ENSMUSG00000097964 ENSMUST00000183058 Gm21045 processed_pseudogene Interval_41199 chr12 111738863 111739350 + 0 NA intron (ENSMUSG00000037787.14, intron 4 of 5) protein_coding-intron (ENSMUSG00000037787.14, intron 4 of 5) -7275 ENSMUSG00000090026.1 ENSMUSG00000090026 ENSMUST00000161925 Gm15996 antisense Interval_33470 chr11 116710970 116711178 + 0 NA Intergenic Intergenic -16465 ENSMUSG00000057286.6 ENSMUSG00000057286 ENSMUST00000145441 St6galnac2 protein_coding Interval_39379 chr12 86998884 87001373 + 0 NA Intergenic Intergenic -16293 ENSMUSG00000048483.6 ENSMUSG00000048483 ENSMUST00000095521 Zdhhc22 protein_coding Interval_94608 chr2 92617983 92618185 + 0 NA Intergenic Intergenic 18377 ENSMUSG00000027221.5 ENSMUSG00000027221 ENSMUST00000065797 Chst1 protein_coding Interval_28191 chr11 74065348 74065583 + 0 NA Intergenic Intergenic -8850 ENSMUSG00000043692.6 ENSMUSG00000043692 ENSMUST00000059440 Olfr399 protein_coding Interval_115736 chr4 103159370 103160093 + 0 NA exon (ENSMUSG00000028522.16, exon 13 of 14) protein_coding-exon (ENSMUSG00000028522.16, exon 13 of 14) 40341 ENSMUSG00000028522.16 ENSMUSG00000028522 ENSMUST00000128536 Mier1 protein_coding Interval_117105 chr4 119566698 119566896 + 0 NA intron (ENSMUSG00000032998.16, intron 2 of 2) protein_coding-intron (ENSMUSG00000032998.16, intron 2 of 12) -12739 ENSMUSG00000081678.1 ENSMUSG00000081678 ENSMUST00000119396 Gm12959 processed_pseudogene Interval_99318 chr2 158909331 158909594 + 0 NA Intergenic Intergenic 82044 ENSMUSG00000027655.14 ENSMUSG00000027655 ENSMUST00000143195 Dhx35 protein_coding Interval_121827 chr5 8551045 8551936 + 0 NA intron (ENSMUSG00000040570.14, intron 5 of 10) protein_coding-intron (ENSMUSG00000040570.14, intron 5 of 9) -36638 ENSMUSG00000105740.1 ENSMUSG00000105740 ENSMUST00000200378 Gm42685 TEC Interval_78393 chr18 12454854 12455173 + 0 NA intron (ENSMUSG00000024421.16, intron 19 of 74) protein_coding-intron (ENSMUSG00000024421.16, intron 19 of 74) 44449 ENSMUSG00000100090.1 ENSMUSG00000100090 ENSMUST00000187766 Gm29199 processed_pseudogene Interval_124727 chr5 53574867 53576067 + 0 NA intron (ENSMUSG00000039191.12, intron 2 of 6) protein_coding-intron (ENSMUSG00000039191.12, intron 1 of 10) -28145 ENSMUSG00000107111.1 ENSMUSG00000107111 ENSMUST00000202154 Gm40304 antisense Interval_38712 chr12 81438910 81439173 + 0 NA intron (ENSMUSG00000091803.7, intron 3 of 4) protein_coding-intron (ENSMUSG00000091803.7, intron 3 of 3) -17095 ENSMUSG00000072972.3 ENSMUSG00000072972 ENSMUST00000085319 Adam4 protein_coding Interval_84515 chr19 12026726 12027446 + 0 NA promoter-TSS (ENSMUSG00000109223.1) unprocessed_pseudogene-promoter-TSS (ENSMUSG00000109223.1) -166 ENSMUSG00000109223.1 ENSMUSG00000109223 ENSMUST00000207392 Gm45116 unprocessed_pseudogene Interval_114951 chr4 87550663 87551318 + 0 NA Intergenic Intergenic -29799 ENSMUSG00000082443.1 ENSMUSG00000082443 ENSMUST00000118382 Gm12604 processed_pseudogene Interval_16944 chr10 70049884 70050204 + 0 NA Intergenic Intergenic -124967 ENSMUSG00000048701.13 ENSMUSG00000048701 ENSMUST00000135607 Ccdc6 protein_coding Interval_66880 chr16 38321420 38321941 + 0 NA TTS (ENSMUSG00000022805.17) protein_coding-TTS (ENSMUSG00000022805.17) 19064 ENSMUSG00000087568.1 ENSMUSG00000087568 ENSMUST00000133496 Maats1os antisense Interval_40020 chr12 100519906 100521332 + 0 NA promoter-TSS (ENSMUSG00000033530.8) protein_coding-promoter-TSS (ENSMUSG00000033530.8) 53357 ENSMUSG00000113687.1 ENSMUSG00000113687 ENSMUST00000223531 Gm49703 TEC Interval_89562 chr2 22798276 22798800 + 0 NA intron (ENSMUSG00000026786.14, intron 1 of 8) protein_coding-intron (ENSMUSG00000026786.14, intron 1 of 13) 24148 ENSMUSG00000026786.14 ENSMUSG00000026786 ENSMUST00000132993 Apbb1ip protein_coding Interval_79527 chr18 32871484 32871700 + 0 NA Intergenic Intergenic 9081 ENSMUSG00000098252.1 ENSMUSG00000098252 ENSMUST00000185079 Mir6361 miRNA Interval_133100 chr5 149808774 149809057 + 0 NA intron (ENSMUSG00000106740.1, intron 1 of 4) lincRNA-intron (ENSMUSG00000106740.1, intron 1 of 4) 2836 ENSMUSG00000106740.1 ENSMUSG00000106740 ENSMUST00000202876 Gm21221 lincRNA Interval_171424 chr9 118186767 118186979 + 0 NA Intergenic Intergenic 36642 ENSMUSG00000097402.1 ENSMUSG00000097402 ENSMUST00000181824 Gm17399 lincRNA Interval_158844 chr8 87158473 87159226 + 0 NA intron (ENSMUSG00000098684.1, intron 3 of 7) lincRNA-intron (ENSMUSG00000098684.1, intron 3 of 7) 41001 ENSMUSG00000099207.7 ENSMUSG00000099207 ENSMUST00000184702 Gm10637 lincRNA Interval_7010 chr1 121854031 121854247 + 0 NA Intergenic Intergenic 116385 ENSMUSG00000083584.1 ENSMUSG00000083584 ENSMUST00000119656 Gm15394 processed_pseudogene Interval_75674 chr17 70530109 70530534 + 0 NA intron (ENSMUSG00000003279.17, intron 1 of 2) protein_coding-intron (ENSMUSG00000003279.17, intron 6 of 14) 225261 ENSMUSG00000097282.1 ENSMUSG00000097282 ENSMUST00000181546 5031415H12Rik antisense Interval_13864 chr10 24048805 24049304 + 0 NA promoter-TSS (ENSMUSG00000100950.1) protein_coding-promoter-TSS (ENSMUSG00000100950.1) -456 ENSMUSG00000100950.1 ENSMUSG00000100950 ENSMUST00000071691 Taar7f protein_coding Interval_129621 chr5 121389330 121389904 + 0 NA intron (ENSMUSG00000104985.1, intron 2 of 3) antisense-intron (ENSMUSG00000104985.1, intron 2 of 3) 4095 ENSMUSG00000106209.1 ENSMUSG00000106209 ENSMUST00000199249 Gm42918 antisense Interval_48979 chr13 106692935 106693173 + 0 NA Intergenic Intergenic 68525 ENSMUSG00000114422.1 ENSMUSG00000114422 ENSMUST00000225713 Gm30411 lincRNA Interval_35277 chr12 19610410 19610990 + 0 NA intron (ENSMUSG00000113957.1, intron 1 of 1) unprocessed_pseudogene-intron (ENSMUSG00000113957.1, intron 1 of 1) 3771 ENSMUSG00000113957.1 ENSMUSG00000113957 ENSMUST00000221254 Gm9257 unprocessed_pseudogene Interval_105033 chr3 79921590 79922638 + 0 NA intron (ENSMUSG00000027955.16, intron 2 of 2) protein_coding-intron (ENSMUSG00000027955.16, intron 2 of 3) -35308 ENSMUSG00000102191.1 ENSMUSG00000102191 ENSMUST00000195082 Gm36569 antisense Interval_28306 chr11 75071032 75071592 + 0 NA promoter-TSS (ENSMUSG00000082481.1) processed_pseudogene-promoter-TSS (ENSMUSG00000082481.1) -99 ENSMUSG00000082481.1 ENSMUSG00000082481 ENSMUST00000119773 Rps12-ps19 processed_pseudogene Interval_130230 chr5 125089197 125089415 + 0 NA intron (ENSMUSG00000029478.16, intron 9 of 47) protein_coding-intron (ENSMUSG00000029478.16, intron 8 of 45) 2465 ENSMUSG00000106663.1 ENSMUSG00000106663 ENSMUST00000198978 Gm42839 antisense Interval_92934 chr2 68784821 68785272 + 0 NA Intergenic Intergenic -45971 ENSMUSG00000082836.1 ENSMUSG00000082836 ENSMUST00000119276 Gm13612 processed_pseudogene Interval_63828 chr16 3832265 3832753 + 0 NA intron (ENSMUSG00000059043.2, intron 1 of 1) protein_coding-intron (ENSMUSG00000059043.2, intron 1 of 1) 1611 ENSMUSG00000059043.2 ENSMUSG00000059043 ENSMUST00000080917 Olfr15 protein_coding Interval_71048 chr17 17413640 17414586 + 0 NA intron (ENSMUSG00000047786.12, intron 1 of 5) protein_coding-intron (ENSMUSG00000047786.12, intron 1 of 5) -2120 ENSMUSG00000097379.2 ENSMUSG00000097379 ENSMUST00000181390 Gm26873 antisense Interval_129074 chr5 117256045 117256647 + 0 NA intron (ENSMUSG00000061288.13, intron 17 of 20) protein_coding-intron (ENSMUSG00000061288.13, intron 16 of 19) 31222 ENSMUSG00000032959.12 ENSMUSG00000032959 ENSMUST00000139913 Pebp1 protein_coding Interval_126290 chr5 86163349 86163713 + 0 NA intron (ENSMUSG00000035898.13, intron 4 of 28) protein_coding-intron (ENSMUSG00000035898.13, intron 4 of 32) 9208 ENSMUSG00000035898.13 ENSMUSG00000035898 ENSMUST00000147734 Uba6 protein_coding Interval_111482 chr4 22023435 22023616 + 0 NA Intergenic Intergenic -15336 ENSMUSG00000080997.1 ENSMUSG00000080997 ENSMUST00000118473 Gm11885 processed_pseudogene Interval_44949 chr13 50488129 50489208 + 0 NA intron (ENSMUSG00000101136.1, intron 1 of 1) antisense-intron (ENSMUSG00000101136.1, intron 1 of 1) 3073 ENSMUSG00000101136.1 ENSMUSG00000101136 ENSMUST00000185962 Gm8739 antisense Interval_42689 chr13 17969635 17969926 + 0 NA intron (ENSMUSG00000113030.1, intron 4 of 4) processed_transcript-intron (ENSMUSG00000113030.1, intron 4 of 4) -8364 ENSMUSG00000114077.1 ENSMUSG00000114077 ENSMUST00000221430 Gm48776 transcribed_processed_pseudogene Interval_170107 chr9 104574493 104574940 + 0 NA intron (ENSMUSG00000032564.16, intron 1 of 12) protein_coding-intron (ENSMUSG00000032564.16, intron 1 of 15) -93206 ENSMUSG00000089116.1 ENSMUSG00000089116 ENSMUST00000158491 Gm25904 snoRNA Interval_169758 chr9 101002220 101004160 + 0 NA intron (ENSMUSG00000032527.13, intron 5 of 13) protein_coding-intron (ENSMUSG00000032527.13, intron 6 of 14) 31691 ENSMUSG00000032527.13 ENSMUSG00000032527 ENSMUST00000189498 Pccb protein_coding Interval_53491 chr14 57812931 57813145 + 0 NA intron (ENSMUSG00000021965.3, intron 5 of 6) protein_coding-intron (ENSMUSG00000021965.3, intron 5 of 8) 13070 ENSMUSG00000021965.3 ENSMUSG00000021965 ENSMUST00000223726 Ska3 protein_coding Interval_67298 chr16 45711322 45711841 + 0 NA exon (ENSMUSG00000022658.10, exon 4 of 4) protein_coding-exon (ENSMUSG00000022658.10, exon 4 of 4) 13027 ENSMUSG00000022658.10 ENSMUSG00000022658 ENSMUST00000096057 Tagln3 protein_coding Interval_112076 chr4 34391499 34391890 + 0 NA Intergenic Intergenic -1847 ENSMUSG00000082649.1 ENSMUSG00000082649 ENSMUST00000121908 Gm12754 processed_pseudogene Interval_75589 chr17 69037522 69038167 + 0 NA Intergenic Intergenic -89156 ENSMUSG00000024044.19 ENSMUSG00000024044 ENSMUST00000223565 Epb41l3 protein_coding Interval_86891 chr19 44669424 44670474 + 0 NA Intergenic Intergenic 25511 ENSMUSG00000097683.2 ENSMUSG00000097683 ENSMUST00000181365 Gm26644 lincRNA Interval_160790 chr8 112316635 112317053 + 0 NA Intergenic Intergenic -79878 ENSMUSG00000110435.1 ENSMUSG00000110435 ENSMUST00000212314 Gm3635 processed_pseudogene Interval_152562 chr7 134566080 134566962 + 0 NA Intergenic Intergenic -67537 ENSMUSG00000030994.16 ENSMUSG00000030994 ENSMUST00000205334 D7Ertd443e protein_coding Interval_65889 chr16 30068730 30071005 + 0 NA Intergenic Intergenic 3529 ENSMUSG00000022528.8 ENSMUSG00000022528 ENSMUST00000161839 Hes1 protein_coding Interval_142444 chr6 142358465 142358796 + 0 NA exon (ENSMUSG00000041671.13, exon 8 of 10) protein_coding-exon (ENSMUSG00000041671.13, exon 8 of 10) 12963 ENSMUSG00000041671.13 ENSMUSG00000041671 ENSMUST00000153912 Pyroxd1 protein_coding Interval_59524 chr15 55014582 55014896 + 0 NA TTS (ENSMUSG00000037343.8) protein_coding-TTS (ENSMUSG00000037343.8) 8043 ENSMUSG00000037343.8 ENSMUSG00000037343 ENSMUST00000227254 Taf2 protein_coding Interval_30814 chr11 96648756 96648986 + 0 NA intron (ENSMUSG00000057058.16, intron 4 of 7) protein_coding-intron (ENSMUSG00000057058.16, intron 4 of 11) -117931 ENSMUSG00000085242.1 ENSMUSG00000085242 ENSMUST00000124865 Gm11537 antisense Interval_109889 chr3 149518754 149519584 + 0 NA Intergenic Intergenic -73868 ENSMUSG00000106515.4 ENSMUSG00000106515 ENSMUST00000199503 Gm30382 lincRNA Interval_134446 chr6 28790010 28790670 + 0 NA intron (ENSMUSG00000001424.14, intron 1 of 3) protein_coding-intron (ENSMUSG00000001424.14, intron 15 of 23) -6123 ENSMUSG00000103899.1 ENSMUSG00000103899 ENSMUST00000194243 Gm37940 TEC Interval_32773 chr11 110454181 110455301 + 0 NA intron (ENSMUSG00000020623.11, intron 1 of 11) protein_coding-intron (ENSMUSG00000020623.11, intron 1 of 11) -22636 ENSMUSG00000020623.11 ENSMUSG00000020623 ENSMUST00000133920 Map2k6 protein_coding Interval_62583 chr15 94882495 94882860 + 0 NA intron (ENSMUSG00000063296.5, intron 4 of 7) protein_coding-intron (ENSMUSG00000063296.5, intron 4 of 7) 104461 ENSMUSG00000077447.1 ENSMUSG00000077447 ENSMUST00000104259 Gm23129 snoRNA Interval_69527 chr16 94049690 94050516 + 0 NA Intergenic Intergenic 33763 ENSMUSG00000116569.1 ENSMUSG00000116569 ENSMUST00000231710 Gm49620 bidirectional_promoter_lncRNA Interval_58219 chr15 31126602 31127731 + 0 NA Intergenic Intergenic 67172 ENSMUSG00000077468.1 ENSMUSG00000077468 ENSMUST00000104280 Gm26416 snoRNA Interval_168473 chr9 81631990 81634224 + 0 NA promoter-TSS (ENSMUSG00000049511.5) protein_coding-promoter-TSS (ENSMUSG00000049511.5) 689 ENSMUSG00000097466.8 ENSMUSG00000097466 ENSMUST00000183781 D430036J16Rik antisense Interval_24087 chr11 30124842 30125715 + 0 NA intron (ENSMUSG00000020315.18, intron 18 of 30) protein_coding-intron (ENSMUSG00000020315.18, intron 18 of 35) 18884 ENSMUSG00000101872.1 ENSMUSG00000101872 ENSMUST00000186216 Gm29237 antisense Interval_56240 chr14 114666989 114668175 + 0 NA Intergenic Intergenic 153643 ENSMUSG00000103140.1 ENSMUSG00000103140 ENSMUST00000194590 Gm37495 TEC Interval_147941 chr7 75769220 75770582 + 0 NA exon (ENSMUSG00000097415.2, exon 3 of 3) lincRNA-exon (ENSMUSG00000097415.2, exon 3 of 3) 2145 ENSMUSG00000097415.2 ENSMUSG00000097415 ENSMUST00000181224 AU020206 lincRNA Interval_93666 chr2 75687156 75687552 + 0 NA promoter-TSS (ENSMUSG00000089015.1) snRNA-promoter-TSS (ENSMUSG00000089015.1) -516 ENSMUSG00000089015.1 ENSMUSG00000089015 ENSMUST00000158390 Gm24996 snRNA Interval_105525 chr3 87290017 87290322 + 0 NA Intergenic Intergenic -26431 ENSMUSG00000015852.13 ENSMUSG00000015852 ENSMUST00000146512 Fcrls protein_coding Interval_163405 chr9 21280360 21280609 + 0 NA TTS (ENSMUSG00000035047.9) protein_coding-TTS (ENSMUSG00000035047.9) 7472 ENSMUSG00000035047.9 ENSMUSG00000035047 ENSMUST00000183665 Kri1 protein_coding Interval_173322 chrX 79605319 79606859 + 0 NA Intergenic Intergenic 29493 ENSMUSG00000046942.17 ENSMUSG00000046942 ENSMUST00000052283 Mageb16 protein_coding Interval_30171 chr11 90109247 90110525 + 0 NA Intergenic Intergenic 33738 ENSMUSG00000085074.1 ENSMUSG00000085074 ENSMUST00000142279 Gm11494 lincRNA Interval_146253 chr7 44978026 44978402 + 0 NA TTS (ENSMUSG00000109324.2) protein_coding-TTS (ENSMUSG00000109324.2) 4634 ENSMUSG00000109111.1 ENSMUSG00000109111 ENSMUST00000209089 6530437J22Rik antisense Interval_164269 chr9 34818706 34818923 + 0 NA intron (ENSMUSG00000032036.15, intron 1 of 15) protein_coding-intron (ENSMUSG00000032036.15, intron 1 of 16) 110695 ENSMUSG00000053889.5 ENSMUSG00000053889 ENSMUST00000066604 Kirrel3os antisense Interval_5414 chr1 88612615 88613593 + 0 NA Intergenic Intergenic -39981 ENSMUSG00000104057.1 ENSMUSG00000104057 ENSMUST00000194311 Gm38130 TEC Interval_120896 chr4 151404561 151405328 + 0 NA intron (ENSMUSG00000014592.21, intron 5 of 24) protein_coding-intron (ENSMUSG00000014592.21, intron 5 of 23) 28474 ENSMUSG00000085593.1 ENSMUSG00000085593 ENSMUST00000129097 4930589P08Rik antisense Interval_52329 chr14 45068348 45068787 + 0 NA intron (ENSMUSG00000115735.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000115735.1, intron 1 of 2) -22048 ENSMUSG00000114974.1 ENSMUSG00000114974 ENSMUST00000228799 Gm21010 processed_pseudogene Interval_167094 chr9 65207567 65209370 + 0 NA intron (ENSMUSG00000032392.11, intron 1 of 6) protein_coding-intron (ENSMUSG00000032392.11, intron 1 of 6) -6627 ENSMUSG00000095892.1 ENSMUSG00000095892 ENSMUST00000093721 Rnu5g snRNA Interval_62862 chr15 97469648 97470590 + 0 NA Intergenic Intergenic 88171 ENSMUSG00000116131.1 ENSMUSG00000116131 ENSMUST00000230522 Gm49506 processed_pseudogene Interval_57535 chr15 12174825 12175194 + 0 NA intron (ENSMUSG00000022201.16, intron 2 of 4) protein_coding-intron (ENSMUSG00000022201.16, intron 17 of 19) 3517 ENSMUSG00000084592.1 ENSMUSG00000084592 ENSMUST00000122643 Mir1898 miRNA Interval_30742 chr11 96223927 96224419 + 0 NA Intergenic Intergenic -23862 ENSMUSG00000099133.1 ENSMUSG00000099133 ENSMUST00000184648 Gm27605 misc_RNA Interval_153241 chr7 142725977 142726198 + 0 NA intron (ENSMUSG00000000215.11, intron 2 of 4) protein_coding-intron (ENSMUSG00000000215.11, intron 2 of 4) 17294 ENSMUSG00000000215.11 ENSMUSG00000000215 ENSMUST00000162317 Ins2 protein_coding Interval_51593 chr14 30574137 30576260 + 0 NA TTS (ENSMUSG00000021957.7) protein_coding-TTS (ENSMUSG00000021957.7) 3049 ENSMUSG00000093156.1 ENSMUSG00000093156 ENSMUST00000175415 Mir3076 miRNA Interval_41126 chr12 111340668 111340958 + 0 NA intron (ENSMUSG00000021279.5, intron 4 of 4) protein_coding-intron (ENSMUSG00000021279.5, intron 3 of 36) -26276 ENSMUSG00000021279.5 ENSMUSG00000021279 ENSMUST00000222196 Cdc42bpb protein_coding Interval_82294 chr18 70319579 70320296 + 0 NA Intergenic Intergenic -43637 ENSMUSG00000118497.1 ENSMUSG00000118497 ENSMUST00000239144 AC124764.1 protein_coding Interval_169788 chr9 101402764 101402931 + 0 NA Intergenic Intergenic -9737 ENSMUSG00000096166.1 ENSMUSG00000096166 ENSMUST00000179807 Gm24638 snoRNA Interval_76607 chr17 82378120 82378410 + 0 NA Intergenic Intergenic 22872 ENSMUSG00000117643.1 ENSMUSG00000117643 ENSMUST00000234825 Gm9390 processed_pseudogene Interval_41504 chr12 115424327 115424821 + 0 NA Intergenic Intergenic -11451 ENSMUSG00000103470.1 ENSMUSG00000103470 ENSMUST00000195757 Gm38184 IG_V_pseudogene Interval_115213 chr4 94490013 94490265 + 0 NA Intergenic Intergenic 2256 ENSMUSG00000088677.1 ENSMUSG00000088677 ENSMUST00000158052 Gm22804 snoRNA Interval_56989 chr15 3270164 3271775 + 0 NA promoter-TSS (ENSMUSG00000064373.12) protein_coding-promoter-TSS (ENSMUSG00000064373.12) -1116 ENSMUSG00000064373.12 ENSMUSG00000064373 ENSMUST00000160930 Selenop protein_coding Interval_138327 chr6 87254182 87255591 + 0 NA exon (ENSMUSG00000107865.1, exon 1 of 1) TEC-exon (ENSMUSG00000107865.1, exon 1 of 1) 722 ENSMUSG00000107865.1 ENSMUSG00000107865 ENSMUST00000203298 Gm44417 TEC Interval_32646 chr11 109376951 109378167 + 0 NA intron (ENSMUSG00000020611.14, intron 2 of 3) protein_coding-intron (ENSMUSG00000020611.14, intron 2 of 3) -14316 ENSMUSG00000056687.9 ENSMUSG00000056687 ENSMUST00000190563 Gm11696 antisense Interval_40767 chr12 108253011 108253639 + 0 NA intron (ENSMUSG00000084883.2, intron 1 of 5) protein_coding-intron (ENSMUSG00000084883.2, intron 1 of 6) 22100 ENSMUSG00000084883.2 ENSMUSG00000084883 ENSMUST00000136175 Ccdc85c protein_coding Interval_65949 chr16 30458268 30460732 + 0 NA Intergenic Intergenic 6912 ENSMUSG00000116960.1 ENSMUSG00000116960 ENSMUST00000231864 Gm49679 processed_pseudogene Interval_13809 chr10 22778112 22778399 + 0 NA Intergenic Intergenic -13064 ENSMUSG00000112727.1 ENSMUSG00000112727 ENSMUST00000220252 Gm17794 processed_pseudogene Interval_129172 chr5 117968752 117969129 + 0 NA Intergenic Intergenic 7620 ENSMUSG00000088085.1 ENSMUSG00000088085 ENSMUST00000157460 Gm25343 snRNA Interval_163113 chr9 15357094 15358285 + 0 NA promoter-TSS (ENSMUSG00000046111.17) protein_coding-promoter-TSS (ENSMUSG00000046111.17) -23678 ENSMUSG00000111763.1 ENSMUSG00000111763 ENSMUST00000217087 Gm34973 lincRNA Interval_115225 chr4 94579853 94580054 + 0 NA intron (ENSMUSG00000028577.13, intron 2 of 4) protein_coding-intron (ENSMUSG00000028577.13, intron 9 of 13) -19432 ENSMUSG00000063314.5 ENSMUSG00000063314 ENSMUST00000119560 Gm12657 processed_pseudogene Interval_29606 chr11 85329851 85331126 + 0 NA intron (ENSMUSG00000020525.17, intron 2 of 3) protein_coding-intron (ENSMUSG00000020525.17, intron 2 of 5) 18324 ENSMUSG00000020525.17 ENSMUSG00000020525 ENSMUST00000127717 Ppm1d protein_coding Interval_14531 chr10 35016398 35016941 + 0 NA intron (ENSMUSG00000111042.1, intron 2 of 3) transcribed_processed_pseudogene-intron (ENSMUSG00000111042.1, intron 2 of 3) -95529 ENSMUSG00000077749.1 ENSMUSG00000077749 ENSMUST00000104561 Gm26341 snoRNA Interval_132805 chr5 147975739 147976616 + 0 NA intron (ENSMUSG00000029651.16, intron 1 of 14) protein_coding-intron (ENSMUSG00000029651.16, intron 1 of 14) -19011 ENSMUSG00000085565.1 ENSMUSG00000085565 ENSMUST00000138406 Gm15721 lincRNA Interval_98687 chr2 154317582 154317788 + 0 NA intron (ENSMUSG00000067996.5, intron 12 of 14) protein_coding-intron (ENSMUSG00000067996.5, intron 12 of 14) 10458 ENSMUSG00000067996.5 ENSMUSG00000067996 ENSMUST00000088921 Bpifb9b protein_coding Interval_32391 chr11 107319655 107320433 + 0 NA TTS (ENSMUSG00000040430.18) protein_coding-TTS (ENSMUSG00000040430.18) -10664 ENSMUSG00000081995.1 ENSMUSG00000081995 ENSMUST00000119399 Gm11719 processed_pseudogene Interval_61395 chr15 81328242 81329494 + 0 NA exon (ENSMUSG00000022404.8, exon 5 of 5) protein_coding-exon (ENSMUSG00000022404.8, exon 5 of 5) 31909 ENSMUSG00000022404.8 ENSMUSG00000022404 ENSMUST00000231078 Slc25a17 protein_coding Interval_153366 chr7 144055114 144056693 + 0 NA intron (ENSMUSG00000037541.22, intron 3 of 17) protein_coding-intron (ENSMUSG00000037541.22, intron 4 of 22) 46649 ENSMUSG00000093221.1 ENSMUSG00000093221 ENSMUST00000175480 Mir3105 miRNA Interval_79958 chr18 36266686 36267318 + 0 NA Intergenic Intergenic -14095 ENSMUSG00000043991.5 ENSMUSG00000043991 ENSMUST00000051301 Pura protein_coding Interval_132989 chr5 149138292 149138517 + 0 NA intron (ENSMUSG00000097191.2, intron 2 of 3) lincRNA-intron (ENSMUSG00000097191.2, intron 2 of 3) -5859 ENSMUSG00000107388.1 ENSMUSG00000107388 ENSMUST00000201604 Gm42788 lincRNA Interval_55168 chr14 78878027 78879194 + 0 NA intron (ENSMUSG00000058997.8, intron 2 of 12) protein_coding-intron (ENSMUSG00000058997.8, intron 2 of 44) -47340 ENSMUSG00000115290.1 ENSMUSG00000115290 ENSMUST00000226127 Gm19098 processed_pseudogene Interval_31974 chr11 104269316 104269708 + 0 NA intron (ENSMUSG00000018411.17, intron 1 of 5) protein_coding-intron (ENSMUSG00000018411.17, intron 1 of 11) -10151 ENSMUSG00000085134.1 ENSMUSG00000085134 ENSMUST00000137561 Gm11659 antisense Interval_68629 chr16 81859167 81859377 + 0 NA Intergenic Intergenic -6079 ENSMUSG00000116954.1 ENSMUSG00000116954 ENSMUST00000231902 Gm5676 processed_pseudogene Interval_5940 chr1 93363791 93364997 + 0 NA intron (ENSMUSG00000026275.13, intron 9 of 9) protein_coding-intron (ENSMUSG00000026275.13, intron 9 of 9) 1139 ENSMUSG00000064389.1 ENSMUSG00000064389 ENSMUST00000082455 Gm26446 snRNA Interval_168206 chr9 77957039 77957438 + 0 NA exon (ENSMUSG00000032349.13, exon 2 of 2) protein_coding-exon (ENSMUSG00000032349.13, exon 2 of 2) -35361 ENSMUSG00000111610.1 ENSMUSG00000111610 ENSMUST00000216017 Gm34829 lincRNA Interval_95419 chr2 109003376 109003567 + 0 NA Intergenic Intergenic -19216 ENSMUSG00000087544.1 ENSMUSG00000087544 ENSMUST00000153283 Gm13923 lincRNA Interval_111102 chr4 12087412 12088276 + 0 NA promoter-TSS (ENSMUSG00000049488.14) protein_coding-promoter-TSS (ENSMUSG00000049488.14) 88 ENSMUSG00000049488.14 ENSMUSG00000049488 ENSMUST00000151859 Tmem67 protein_coding Interval_30124 chr11 89415880 89416838 + 0 NA intron (ENSMUSG00000047773.15, intron 19 of 21) protein_coding-intron (ENSMUSG00000047773.15, intron 1 of 3) 113636 ENSMUSG00000085798.1 ENSMUSG00000085798 ENSMUST00000140754 Gm2018 lincRNA Interval_145690 chr7 37439443 37440237 + 0 NA intron (ENSMUSG00000043456.17, intron 3 of 3) protein_coding-intron (ENSMUSG00000043456.17, intron 3 of 3) 27582 ENSMUSG00000108790.1 ENSMUSG00000108790 ENSMUST00000205574 Gm44806 TEC Interval_82089 chr18 67666394 67667146 + 0 NA intron (ENSMUSG00000024539.17, intron 9 of 9) protein_coding-intron (ENSMUSG00000024539.17, intron 9 of 9) 23454 ENSMUSG00000024539.17 ENSMUSG00000024539 ENSMUST00000128169 Ptpn2 protein_coding Interval_71912 chr17 26961722 26962379 + 0 NA promoter-TSS (ENSMUSG00000067629.13) protein_coding-promoter-TSS (ENSMUSG00000067629.13) 9164 ENSMUSG00000067629.13 ENSMUSG00000067629 ENSMUST00000202208 Syngap1 protein_coding Interval_45909 chr13 59091995 59093271 + 0 NA intron (ENSMUSG00000055254.15, intron 16 of 17) protein_coding-intron (ENSMUSG00000055254.15, intron 16 of 17) -8540 ENSMUSG00000114437.1 ENSMUSG00000114437 ENSMUST00000225244 4930415C11Rik antisense Interval_49451 chr13 112126564 112126807 + 0 NA Intergenic Intergenic -11431 ENSMUSG00000114361.1 ENSMUSG00000114361 ENSMUST00000224924 Gm31104 processed_pseudogene Interval_151706 chr7 126175926 126176244 + 0 NA promoter-TSS (ENSMUSG00000057945.3) processed_pseudogene-promoter-TSS (ENSMUSG00000057945.3) -39 ENSMUSG00000057945.3 ENSMUSG00000057945 ENSMUST00000169993 Gm17136 processed_pseudogene Interval_160571 chr8 110775108 110776250 + 0 NA intron (ENSMUSG00000031750.15, intron 1 of 1) protein_coding-intron (ENSMUSG00000031750.15, intron 1 of 6) 20687 ENSMUSG00000090039.1 ENSMUSG00000090039 ENSMUST00000162828 Gm15894 antisense Interval_80481 chr18 42589427 42590229 + 0 NA intron (ENSMUSG00000117719.1, intron 2 of 2) lincRNA-intron (ENSMUSG00000117719.1, intron 2 of 2) 2487 ENSMUSG00000117719.1 ENSMUSG00000117719 ENSMUST00000235923 Gm50214 lincRNA Interval_46311 chr13 63696235 63697093 + 0 NA intron (ENSMUSG00000113825.1, intron 4 of 4) lincRNA-intron (ENSMUSG00000113825.1, intron 4 of 4) -33485 ENSMUSG00000114071.1 ENSMUSG00000114071 ENSMUST00000222256 Gm47390 lincRNA Interval_26213 chr11 55146818 55147892 + 0 NA intron (ENSMUSG00000049491.15, intron 3 of 11) protein_coding-intron (ENSMUSG00000049491.15, intron 3 of 10) 4331 ENSMUSG00000049491.15 ENSMUSG00000049491 ENSMUST00000069816 Slc36a3 protein_coding Interval_121590 chr5 3680267 3680498 + 0 NA TTS (ENSMUSG00000014529.9) protein_coding-TTS (ENSMUSG00000014529.9) -15582 ENSMUSG00000092698.1 ENSMUSG00000092698 ENSMUST00000174957 Gm22926 miRNA Interval_10738 chr1 173842557 173842864 + 0 NA Intergenic Intergenic 8070 ENSMUSG00000102433.1 ENSMUSG00000102433 ENSMUST00000191904 Gm38050 unprocessed_pseudogene Interval_85459 chr19 26715799 26716541 + 0 NA promoter-TSS (ENSMUSG00000024921.17) protein_coding-promoter-TSS (ENSMUSG00000024921.17) -32232 ENSMUSG00000024921.17 ENSMUSG00000024921 ENSMUST00000208984 Smarca2 protein_coding Interval_163903 chr9 28169308 28170173 + 0 NA intron (ENSMUSG00000062257.13, intron 1 of 7) protein_coding-intron (ENSMUSG00000062257.13, intron 1 of 7) -28200 ENSMUSG00000087531.7 ENSMUSG00000087531 ENSMUST00000139851 Gm15606 sense_intronic Interval_148390 chr7 80970695 80970914 + 0 NA Intergenic Intergenic -9089 ENSMUSG00000109367.1 ENSMUSG00000109367 ENSMUST00000209023 Gm18782 processed_pseudogene Interval_6501 chr1 112822000 112822495 + 0 NA Intergenic Intergenic 53741 ENSMUSG00000099884.1 ENSMUSG00000099884 ENSMUST00000185696 Gm8204 processed_pseudogene Interval_96789 chr2 128265203 128265755 + 0 NA intron (ENSMUSG00000074813.14, intron 2 of 3) lincRNA-intron (ENSMUSG00000074813.14, intron 2 of 4) 75492 ENSMUSG00000085750.1 ENSMUSG00000085750 ENSMUST00000152439 Gm14009 lincRNA Interval_73899 chr17 45382992 45384303 + 0 NA Intergenic Intergenic 49894 ENSMUSG00000023932.9 ENSMUSG00000023932 ENSMUST00000232910 Cdc5l protein_coding Interval_78934 chr18 22171136 22171433 + 0 NA promoter-TSS (ENSMUSG00000024306.13) protein_coding-promoter-TSS (ENSMUSG00000024306.13) 158 ENSMUSG00000024306.13 ENSMUSG00000024306 ENSMUST00000234661 Ccdc178 protein_coding Interval_62924 chr15 97943519 97943782 + 0 NA Intergenic Intergenic 8365 ENSMUSG00000089233.1 ENSMUSG00000089233 ENSMUST00000158608 Gm22202 misc_RNA Interval_54563 chr14 70690242 70690579 + 0 NA intron (ENSMUSG00000022100.14, intron 11 of 27) protein_coding-intron (ENSMUSG00000022100.14, intron 11 of 27) 15960 ENSMUSG00000115387.1 ENSMUSG00000115387 ENSMUST00000228317 Gm49244 processed_pseudogene Interval_41876 chr13 3822549 3823295 + 0 NA Intergenic Intergenic -2597 ENSMUSG00000114091.1 ENSMUSG00000114091 ENSMUST00000220802 Gm40655 sense_overlapping Interval_150751 chr7 114103772 114104528 + 0 NA intron (ENSMUSG00000055723.6, intron 1 of 5) protein_coding-intron (ENSMUSG00000055723.6, intron 1 of 5) 13614 ENSMUSG00000055723.6 ENSMUSG00000055723 ENSMUST00000210075 Rras2 protein_coding Interval_42178 chr13 9596023 9596281 + 0 NA intron (ENSMUSG00000048264.16, intron 19 of 38) protein_coding-intron (ENSMUSG00000048264.16, intron 19 of 38) -14654 ENSMUSG00000048264.16 ENSMUSG00000048264 ENSMUST00000222280 Dip2c protein_coding Interval_110222 chr3 154526422 154526839 + 0 NA Intergenic Intergenic 70468 ENSMUSG00000047583.9 ENSMUSG00000047583 ENSMUST00000122976 Tyw3 protein_coding Interval_24109 chr11 30404703 30405091 + 0 NA Intergenic Intergenic 66930 ENSMUSG00000040919.13 ENSMUSG00000040919 ENSMUST00000152718 4930505A04Rik protein_coding Interval_21858 chr11 4789764 4790179 + 0 NA intron (ENSMUSG00000009073.16, intron 11 of 15) protein_coding-intron (ENSMUSG00000009073.16, intron 11 of 16) -43193 ENSMUSG00000009075.2 ENSMUSG00000009075 ENSMUST00000009219 Cabp7 protein_coding Interval_93506 chr2 73604519 73606364 + 0 NA intron (ENSMUSG00000086544.1, intron 1 of 3) antisense-intron (ENSMUSG00000086544.1, intron 1 of 3) 8617 ENSMUSG00000086544.1 ENSMUSG00000086544 ENSMUST00000149231 Chn1os3 antisense Interval_166639 chr9 61478943 61479809 + 0 NA Intergenic Intergenic -6390 ENSMUSG00000111635.1 ENSMUSG00000111635 ENSMUST00000217096 Gm47240 processed_pseudogene Interval_143017 chr6 148435346 148435550 + 0 NA intron (ENSMUSG00000030306.14, intron 1 of 18) protein_coding-intron (ENSMUSG00000030306.14, intron 1 of 19) 6187 ENSMUSG00000030306.14 ENSMUSG00000030306 ENSMUST00000203991 Tmtc1 protein_coding Interval_52095 chr14 35817635 35817848 + 0 NA Intergenic Intergenic -2868 ENSMUSG00000115375.1 ENSMUSG00000115375 ENSMUST00000227206 Gm49039 processed_pseudogene Interval_132055 chr5 142509168 142510109 + 0 NA promoter-TSS (ENSMUSG00000029576.17) protein_coding-promoter-TSS (ENSMUSG00000029576.17) 20438 ENSMUSG00000074817.2 ENSMUSG00000074817 ENSMUST00000099400 Papolb protein_coding Interval_136661 chr6 57304226 57304899 + 0 NA Intergenic Intergenic -8377 ENSMUSG00000093621.1 ENSMUSG00000093621 ENSMUST00000176165 Vmn1r-ps10 unprocessed_pseudogene Interval_49622 chr13 113603392 113603962 + 0 NA intron (ENSMUSG00000042364.11, intron 1 of 1) protein_coding-intron (ENSMUSG00000042364.11, intron 1 of 1) 10337 ENSMUSG00000042364.11 ENSMUSG00000042364 ENSMUST00000224883 Snx18 protein_coding Interval_52167 chr14 37748966 37750260 + 0 NA Intergenic Intergenic 27496 ENSMUSG00000114766.1 ENSMUSG00000114766 ENSMUST00000225782 Gm5203 processed_pseudogene Interval_8336 chr1 137427875 137428119 + 0 NA Intergenic Intergenic -60750 ENSMUSG00000088164.1 ENSMUSG00000088164 ENSMUST00000157539 Gm23534 snoRNA Interval_37576 chr12 70031588 70031903 + 0 NA promoter-TSS (ENSMUSG00000021068.17) protein_coding-promoter-TSS (ENSMUSG00000021068.17) -36853 ENSMUSG00000089153.1 ENSMUSG00000089153 ENSMUST00000158528 Gm23579 snRNA Interval_65011 chr16 17848942 17849584 + 0 NA TTS (ENSMUSG00000003166.20) protein_coding-TTS (ENSMUSG00000003166.20) -11870 ENSMUSG00000090236.3 ENSMUSG00000090236 ENSMUST00000232516 Car15 protein_coding Interval_174313 chrX 144327708 144328355 + 0 NA intron (ENSMUSG00000041718.16, intron 3 of 21) protein_coding-intron (ENSMUSG00000041718.16, intron 3 of 6) -6776 ENSMUSG00000080922.1 ENSMUSG00000080922 ENSMUST00000121333 Gm2214 processed_pseudogene Interval_69476 chr16 93785291 93785521 + 0 NA intron (ENSMUSG00000022946.10, intron 5 of 6) protein_coding-intron (ENSMUSG00000022946.10, intron 26 of 36) -7383 ENSMUSG00000022946.10 ENSMUSG00000022946 ENSMUST00000228423 Dop1b protein_coding Interval_8453 chr1 139499668 139500761 + 0 NA Intergenic Intergenic -16180 ENSMUSG00000026368.6 ENSMUSG00000026368 ENSMUST00000141842 F13b protein_coding Interval_171434 chr9 118317750 118318036 + 0 NA Intergenic Intergenic 30107 ENSMUSG00000084608.1 ENSMUSG00000084608 ENSMUST00000122659 Gm22198 misc_RNA Interval_2962 chr1 51678115 51678831 + 0 NA Intergenic Intergenic 19427 ENSMUSG00000101741.1 ENSMUSG00000101741 ENSMUST00000186769 Gm28055 lincRNA Interval_76395 chr17 79897681 79898470 + 0 NA Intergenic Intergenic 36497 ENSMUSG00000117458.1 ENSMUSG00000117458 ENSMUST00000234229 Gm6552 processed_pseudogene Interval_42987 chr13 22319678 22320645 + 0 NA Intergenic Intergenic -4428 ENSMUSG00000069294.2 ENSMUSG00000069294 ENSMUST00000091734 Vmn1r197 protein_coding Interval_42088 chr13 8523059 8524211 + 0 NA intron (ENSMUSG00000052551.16, intron 1 of 10) protein_coding-intron (ENSMUSG00000052551.16, intron 1 of 9) -29385 ENSMUSG00000113742.1 ENSMUSG00000113742 ENSMUST00000220604 Gm48262 TEC Interval_159889 chr8 104701303 104701768 + 0 NA TTS (ENSMUSG00000110557.2) transcribed_unprocessed_pseudogene-TTS (ENSMUSG00000110557.2) 6722 ENSMUSG00000110557.2 ENSMUSG00000110557 ENSMUST00000212774 Gm5159 transcribed_unprocessed_pseudogene Interval_164943 chr9 43268949 43269853 + 0 NA intron (ENSMUSG00000095385.3, intron 1 of 1) lincRNA-intron (ENSMUSG00000095385.3, intron 2 of 2) 4122 ENSMUSG00000095385.3 ENSMUSG00000095385 ENSMUST00000210037 D630033O11Rik lincRNA Interval_110268 chr3 155166591 155167266 + 0 NA intron (ENSMUSG00000028182.14, intron 6 of 7) protein_coding-intron (ENSMUSG00000028182.14, intron 6 of 7) 72063 ENSMUSG00000104122.1 ENSMUSG00000104122 ENSMUST00000194899 Gm37482 TEC Interval_77184 chr17 87185341 87186110 + 0 NA Intergenic Intergenic -1500 ENSMUSG00000095035.1 ENSMUSG00000095035 ENSMUST00000116918 Gm22346 miRNA Interval_48827 chr13 103757463 103757803 + 0 NA TTS (ENSMUSG00000032621.8) protein_coding-TTS (ENSMUSG00000032621.8) 11715 ENSMUSG00000032621.8 ENSMUSG00000032621 ENSMUST00000211139 Srek1 protein_coding Interval_52915 chr14 52030166 52030793 + 0 NA Intergenic Intergenic 7195 ENSMUSG00000115141.1 ENSMUSG00000115141 ENSMUST00000227187 Gm49256 lincRNA Interval_20936 chr10 122410303 122411613 + 0 NA intron (ENSMUSG00000112873.1, intron 2 of 2) antisense-intron (ENSMUSG00000112873.1, intron 2 of 2) 24066 ENSMUSG00000112774.1 ENSMUSG00000112774 ENSMUST00000218971 Gm36041 lincRNA Interval_43739 chr13 35878983 35879713 + 0 NA Intergenic Intergenic -26109 ENSMUSG00000114270.1 ENSMUSG00000114270 ENSMUST00000225277 Gm48746 lincRNA Interval_153615 chr8 3842561 3843652 + 0 NA promoter-TSS (ENSMUSG00000074485.1) processed_pseudogene-promoter-TSS (ENSMUSG00000074485.1) -711 ENSMUSG00000074485.1 ENSMUSG00000074485 ENSMUST00000098958 Gm7381 processed_pseudogene Interval_77159 chr17 86975743 86976690 + 0 NA TTS (ENSMUSG00000117628.1) sense_intronic-TTS (ENSMUSG00000117628.1) 5844 ENSMUSG00000117628.1 ENSMUSG00000117628 ENSMUST00000234698 Gm50012 sense_intronic Interval_166936 chr9 64014866 64015194 + 0 NA intron (ENSMUSG00000036867.7, intron 1 of 3) protein_coding-intron (ENSMUSG00000036867.7, intron 1 of 3) 7002 ENSMUSG00000036867.7 ENSMUSG00000036867 ENSMUST00000179458 Smad6 protein_coding Interval_8230 chr1 136612837 136613921 + 0 NA Intergenic Intergenic -7911 ENSMUSG00000104366.1 ENSMUSG00000104366 ENSMUST00000193674 4933409D19Rik lincRNA Interval_106338 chr3 95462127 95462399 + 0 NA TTS (ENSMUSG00000105395.1) processed_pseudogene-TTS (ENSMUSG00000105395.1) 1072 ENSMUSG00000105395.1 ENSMUSG00000105395 ENSMUST00000197821 Gm42672 processed_pseudogene Interval_2338 chr1 38181092 38181745 + 0 NA exon (ENSMUSG00000037138.18, exon 22 of 23) protein_coding-exon (ENSMUSG00000037138.18, exon 22 of 23) 49335 ENSMUSG00000102716.1 ENSMUSG00000102716 ENSMUST00000194892 Gm5099 lincRNA Interval_66536 chr16 34956309 34957827 + 0 NA intron (ENSMUSG00000116665.1, intron 1 of 2) protein_coding-intron (ENSMUSG00000022836.11, intron 21 of 31) 1810 ENSMUSG00000116665.1 ENSMUSG00000116665 ENSMUST00000232399 E130310I04Rik antisense Interval_134743 chr6 31136660 31137364 + 0 NA intron (ENSMUSG00000044471.12, intron 2 of 5) lincRNA-intron (ENSMUSG00000044471.12, intron 3 of 3) 5651 ENSMUSG00000086922.2 ENSMUSG00000086922 ENSMUST00000118459 Gm13835 processed_pseudogene Interval_13719 chr10 21374154 21375062 + 0 NA Intergenic Intergenic -2692 ENSMUSG00000037542.13 ENSMUSG00000037542 ENSMUST00000159163 Aldh8a1 protein_coding Interval_76970 chr17 85262723 85263553 + 0 NA intron (ENSMUSG00000071037.6, intron 3 of 10) protein_coding-intron (ENSMUSG00000071037.6, intron 3 of 10) 172532 ENSMUSG00000071037.6 ENSMUSG00000071037 ENSMUST00000234501 Camkmt protein_coding Interval_135721 chr6 45059157 45060683 + 0 NA promoter-TSS (ENSMUSG00000039419.17) protein_coding-promoter-TSS (ENSMUSG00000039419.17) 563 ENSMUSG00000039419.17 ENSMUSG00000039419 ENSMUST00000060839 Cntnap2 protein_coding Interval_77045 chr17 85977121 85977292 + 0 NA Intergenic Intergenic -48627 ENSMUSG00000117501.1 ENSMUSG00000117501 ENSMUST00000234707 Gm30117 lincRNA Interval_75036 chr17 61829279 61829528 + 0 NA Intergenic Intergenic -42972 ENSMUSG00000117160.1 ENSMUSG00000117160 ENSMUST00000232834 Gm49859 processed_pseudogene Interval_58528 chr15 35666964 35667242 + 0 NA intron (ENSMUSG00000037646.10, intron 30 of 61) protein_coding-intron (ENSMUSG00000037646.10, intron 30 of 61) -6056 ENSMUSG00000077890.1 ENSMUSG00000077890 ENSMUST00000104698 Mir875 miRNA Interval_33970 chr11 119743426 119743955 + 0 NA intron (ENSMUSG00000025583.15, intron 4 of 32) protein_coding-intron (ENSMUSG00000025583.15, intron 4 of 33) -2711 ENSMUSG00000088670.1 ENSMUSG00000088670 ENSMUST00000158045 Gm23663 snoRNA Interval_156156 chr8 45246236 45246913 + 0 NA intron (ENSMUSG00000031645.4, intron 11 of 14) protein_coding-intron (ENSMUSG00000031645.4, intron 11 of 14) 15457 ENSMUSG00000031645.4 ENSMUSG00000031645 ENSMUST00000210622 F11 protein_coding Interval_80428 chr18 42122349 42123192 + 0 NA intron (ENSMUSG00000057719.11, intron 3 of 7) protein_coding-intron (ENSMUSG00000057719.11, intron 4 of 8) -20263 ENSMUSG00000057719.11 ENSMUSG00000057719 ENSMUST00000236947 Sh3rf2 protein_coding Interval_45905 chr13 59052367 59052884 + 0 NA intron (ENSMUSG00000055254.15, intron 14 of 17) protein_coding-intron (ENSMUSG00000055254.15, intron 14 of 17) 25671 ENSMUSG00000114896.1 ENSMUSG00000114896 ENSMUST00000224384 Gm34245 TEC Interval_15448 chr10 46775900 46776097 + 0 NA Intergenic Intergenic 62509 ENSMUSG00000065718.1 ENSMUSG00000065718 ENSMUST00000083784 Gm25650 snRNA Interval_165716 chr9 51510259 51510593 + 0 NA Intergenic Intergenic -112319 ENSMUSG00000111162.1 ENSMUSG00000111162 ENSMUST00000216682 Gm7293 processed_pseudogene Interval_111566 chr4 23552573 23552776 + 0 NA Intergenic Intergenic -34234 ENSMUSG00000082876.1 ENSMUSG00000082876 ENSMUST00000118402 Gm11889 processed_pseudogene Interval_98247 chr2 150399032 150400357 + 0 NA promoter-TSS (ENSMUSG00000083964.1) processed_pseudogene-promoter-TSS (ENSMUSG00000083964.1) -295 ENSMUSG00000083964.1 ENSMUSG00000083964 ENSMUST00000122076 Gm14122 processed_pseudogene Interval_174240 chrX 140510246 140511197 + 0 NA Intergenic Intergenic 37808 ENSMUSG00000031431.13 ENSMUSG00000031431 ENSMUST00000152048 Tsc22d3 protein_coding Interval_157980 chr8 77534041 77535615 + 0 NA Intergenic Intergenic -14626 ENSMUSG00000037134.17 ENSMUSG00000037134 ENSMUST00000156753 Prmt9 protein_coding Interval_15127 chr10 42714543 42716029 + 0 NA Intergenic Intergenic -16768 ENSMUSG00000086434.1 ENSMUSG00000086434 ENSMUST00000149950 Gm15200 antisense Interval_122963 chr5 27891358 27891703 + 0 NA Intergenic Intergenic 31081 ENSMUSG00000106390.1 ENSMUSG00000106390 ENSMUST00000199720 Gm5551 processed_pseudogene Interval_168326 chr9 78731924 78732878 + 0 NA Intergenic Intergenic 33199 ENSMUSG00000111139.1 ENSMUSG00000111139 ENSMUST00000217312 Gm47497 processed_pseudogene Interval_115308 chr4 95731038 95731611 + 0 NA intron (ENSMUSG00000028573.18, intron 5 of 5) protein_coding-intron (ENSMUSG00000028573.18, intron 6 of 10) -169165 ENSMUSG00000093492.1 ENSMUSG00000093492 ENSMUST00000177219 Gm20651 processed_pseudogene Interval_138583 chr6 89594922 89595961 + 0 NA intron (ENSMUSG00000030086.16, intron 1 of 5) protein_coding-intron (ENSMUSG00000030086.16, intron 1 of 7) 163 ENSMUSG00000030086.16 ENSMUSG00000030086 ENSMUST00000204654 Chchd6 protein_coding Interval_60989 chr15 78547565 78548661 + 0 NA Intergenic Intergenic -5072 ENSMUSG00000044933.3 ENSMUSG00000044933 ENSMUST00000230400 Sstr3 protein_coding Interval_111737 chr4 27049797 27050102 + 0 NA Intergenic Intergenic 76560 ENSMUSG00000083447.1 ENSMUSG00000083447 ENSMUST00000120562 Gm11904 processed_pseudogene Interval_30566 chr11 95150279 95150789 + 0 NA intron (ENSMUSG00000086552.3, intron 1 of 2) antisense-intron (ENSMUSG00000086552.3, intron 1 of 2) -4733 ENSMUSG00000020871.8 ENSMUSG00000020871 ENSMUST00000146838 Dlx4 protein_coding Interval_104055 chr3 57746646 57747067 + 0 NA intron (ENSMUSG00000036503.13, intron 1 of 1) protein_coding-intron (ENSMUSG00000036503.13, intron 1 of 9) 10736 ENSMUSG00000036503.13 ENSMUSG00000036503 ENSMUST00000197783 Rnf13 protein_coding Interval_41303 chr12 112595163 112595902 + 0 NA intron (ENSMUSG00000037679.9, intron 1 of 1) protein_coding-intron (ENSMUSG00000037679.9, intron 1 of 22) -9125 ENSMUSG00000037679.9 ENSMUSG00000037679 ENSMUST00000222275 Inf2 protein_coding Interval_101685 chr3 8935445 8937528 + 0 NA intron (ENSMUSG00000027506.15, intron 4 of 6) protein_coding-intron (ENSMUSG00000027506.15, intron 5 of 6) -12568 ENSMUSG00000040269.5 ENSMUSG00000040269 ENSMUST00000042148 Mrps28 protein_coding Interval_14685 chr10 38982129 38982750 + 0 NA intron (ENSMUSG00000019846.11, intron 1 of 9) protein_coding-intron (ENSMUSG00000019846.11, intron 1 of 37) 54150 ENSMUSG00000111431.1 ENSMUSG00000111431 ENSMUST00000213395 Gm17779 processed_pseudogene Interval_134729 chr6 31008946 31009838 + 0 NA Intergenic Intergenic -50314 ENSMUSG00000073209.4 ENSMUSG00000073209 ENSMUST00000101589 Klf14 protein_coding Interval_109950 chr3 152122073 152123197 + 0 NA intron (ENSMUSG00000039131.15, intron 3 of 5) protein_coding-intron (ENSMUSG00000039131.15, intron 3 of 5) 16196 ENSMUSG00000105698.1 ENSMUSG00000105698 ENSMUST00000198961 Gm31881 antisense Interval_77295 chr17 87867038 87867928 + 0 NA Intergenic Intergenic 42410 ENSMUSG00000117466.1 ENSMUSG00000117466 ENSMUST00000234350 Gm50039 lincRNA Interval_62132 chr15 87704396 87704996 + 0 NA intron (ENSMUSG00000054863.9, intron 2 of 3) protein_coding-intron (ENSMUSG00000054863.9, intron 2 of 3) 91247 ENSMUSG00000098938.1 ENSMUSG00000098938 ENSMUST00000183709 Mir6393 miRNA Interval_2351 chr1 38307368 38308301 + 0 NA promoter-TSS (ENSMUSG00000085280.1) antisense-promoter-TSS (ENSMUSG00000085280.1) -68 ENSMUSG00000085280.1 ENSMUSG00000085280 ENSMUST00000129696 Gm16151 antisense Interval_132958 chr5 148955690 148955943 + 0 NA exon (ENSMUSG00000108207.2, exon 1 of 1) lincRNA-intron (ENSMUSG00000085237.2, intron 1 of 1) -3462 ENSMUSG00000087272.1 ENSMUSG00000087272 ENSMUST00000135240 Gm15409 lincRNA Interval_66570 chr16 35193005 35194120 + 0 NA intron (ENSMUSG00000022840.9, intron 1 of 20) protein_coding-intron (ENSMUSG00000022840.9, intron 1 of 20) 41361 ENSMUSG00000084581.1 ENSMUSG00000084581 ENSMUST00000122632 Gm25179 snRNA Interval_43159 chr13 24768303 24769173 + 0 NA Intergenic Intergenic -6841 ENSMUSG00000006715.11 ENSMUSG00000006715 ENSMUST00000177253 Gmnn protein_coding Interval_129973 chr5 123390399 123391699 + 0 NA Intergenic Intergenic 4015 ENSMUSG00000086700.2 ENSMUSG00000086700 ENSMUST00000151096 Gm15747 antisense Interval_33774 chr11 118423236 118423893 + 0 NA Intergenic Intergenic -7770 ENSMUSG00000025575.14 ENSMUSG00000025575 ENSMUST00000106287 Cant1 protein_coding Interval_88541 chr2 5950561 5952105 + 0 NA promoter-TSS (ENSMUSG00000043241.14) protein_coding-promoter-TSS (ENSMUSG00000043241.14) -39497 ENSMUSG00000025815.13 ENSMUSG00000025815 ENSMUST00000151649 Dhtkd1 protein_coding Interval_37979 chr12 73559881 73560663 + 0 NA Intergenic Intergenic 11794 ENSMUSG00000113800.1 ENSMUSG00000113800 ENSMUST00000222490 2210039B01Rik lincRNA Interval_90645 chr2 31653764 31655444 + 0 NA exon (ENSMUSG00000079466.2, exon 5 of 5) protein_coding-exon (ENSMUSG00000079466.2, exon 5 of 5) -5866 ENSMUSG00000083143.2 ENSMUSG00000083143 ENSMUST00000122301 Gm13424 processed_pseudogene Interval_84006 chr19 6060782 6062294 + 0 NA exon (ENSMUSG00000075227.6, exon 1 of 1) protein_coding-exon (ENSMUSG00000075227.6, exon 1 of 1) 346 ENSMUSG00000075227.6 ENSMUSG00000075227 ENSMUST00000162726 Znhit2 protein_coding Interval_159755 chr8 101057628 101057979 + 0 NA Intergenic Intergenic -331448 ENSMUSG00000109769.1 ENSMUSG00000109769 ENSMUST00000210760 Gm39232 lincRNA Interval_97656 chr2 142257974 142258259 + 0 NA intron (ENSMUSG00000068205.14, intron 12 of 18) protein_coding-intron (ENSMUSG00000068205.14, intron 12 of 17) 81509 ENSMUSG00000068205.14 ENSMUSG00000068205 ENSMUST00000156619 Macrod2 protein_coding Interval_134611 chr6 29964011 29965100 + 0 NA TTS (ENSMUSG00000065078.1) snRNA-TTS (ENSMUSG00000065078.1) 911 ENSMUSG00000083961.1 ENSMUSG00000083961 ENSMUST00000122139 Gm13725 processed_pseudogene Interval_29461 chr11 84128778 84130101 + 0 NA promoter-TSS (ENSMUSG00000020532.18) protein_coding-promoter-TSS (ENSMUSG00000020532.18) -261 ENSMUSG00000020532.18 ENSMUSG00000020532 ENSMUST00000183887 Acaca protein_coding Interval_111808 chr4 30650693 30651052 + 0 NA Intergenic Intergenic -13724 ENSMUSG00000085522.1 ENSMUSG00000085522 ENSMUST00000128925 4930556G01Rik lincRNA Interval_172671 chrX 41980156 41980412 + 0 NA Intergenic Intergenic 31452 ENSMUSG00000104879.1 ENSMUSG00000104879 ENSMUST00000198566 Gm44490 miRNA Interval_3425 chr1 58253451 58253993 + 0 NA TTS (ENSMUSG00000089822.1) antisense-TTS (ENSMUSG00000089822.1) -24604 ENSMUSG00000079554.2 ENSMUSG00000079554 ENSMUST00000114366 Aox2 protein_coding Interval_47808 chr13 93265839 93266061 + 0 NA Intergenic Intergenic -27831 ENSMUSG00000098092.1 ENSMUSG00000098092 ENSMUST00000182524 Gm2076 processed_pseudogene Interval_1988 chr1 35687448 35688449 + 0 NA Intergenic Intergenic -36651 ENSMUSG00000104417.1 ENSMUSG00000104417 ENSMUST00000195168 Gm37068 lincRNA Interval_62453 chr15 93130439 93131359 + 0 NA Intergenic Intergenic 6643 ENSMUSG00000116124.1 ENSMUSG00000116124 ENSMUST00000230014 Gm49420 processed_transcript Interval_23063 chr11 19579254 19579741 + 0 NA Intergenic Intergenic 48564 ENSMUSG00000086911.1 ENSMUSG00000086911 ENSMUST00000146531 Gm12027 lincRNA Interval_71759 chr17 25907534 25907935 + 0 NA intron (ENSMUSG00000025730.14, intron 2 of 6) protein_coding-intron (ENSMUSG00000025730.14, intron 2 of 6) 5878 ENSMUSG00000057580.4 ENSMUSG00000057580 ENSMUST00000078252 Cox7c-ps1 transcribed_processed_pseudogene Interval_8998 chr1 152999933 153000539 + 0 NA intron (ENSMUSG00000042751.14, intron 2 of 8) protein_coding-intron (ENSMUSG00000042751.14, intron 1 of 10) -50139 ENSMUSG00000100702.1 ENSMUSG00000100702 ENSMUST00000187136 Gm8976 processed_pseudogene Interval_161300 chr8 119612456 119613226 + 0 NA promoter-TSS (ENSMUSG00000024266.8) protein_coding-promoter-TSS (ENSMUSG00000024266.8) 94 ENSMUSG00000024266.8 ENSMUSG00000024266 ENSMUST00000098361 Adad2 protein_coding Interval_50295 chr14 11711619 11713094 + 0 NA intron (ENSMUSG00000021745.14, intron 1 of 3) protein_coding-intron (ENSMUSG00000021745.14, intron 1 of 29) -55587 ENSMUSG00000114310.1 ENSMUSG00000114310 ENSMUST00000225152 Gm48602 TEC Interval_53503 chr14 57900068 57900295 + 0 NA Intergenic Intergenic -9959 ENSMUSG00000021969.8 ENSMUSG00000021969 ENSMUST00000225955 Zdhhc20 protein_coding Interval_118281 chr4 130017123 130017400 + 0 NA intron (ENSMUSG00000028782.14, intron 23 of 28) protein_coding-intron (ENSMUSG00000028782.14, intron 23 of 28) 5060 ENSMUSG00000028782.14 ENSMUSG00000028782 ENSMUST00000136787 Adgrb2 protein_coding Interval_66606 chr16 35595952 35596956 + 0 NA intron (ENSMUSG00000052133.16, intron 1 of 5) protein_coding-intron (ENSMUSG00000052133.16, intron 1 of 21) -22898 ENSMUSG00000052192.5 ENSMUSG00000052192 ENSMUST00000143451 Gm5963 processed_pseudogene Interval_162248 chr8 126443244 126443557 + 0 NA intron (ENSMUSG00000090290.2, intron 19 of 29) protein_coding-intron (ENSMUSG00000090290.2, intron 19 of 29) 20872 ENSMUSG00000051671.7 ENSMUSG00000051671 ENSMUST00000211868 Coa6 protein_coding Interval_20380 chr10 117194743 117195891 + 0 NA Intergenic Intergenic -11906 ENSMUSG00000088397.1 ENSMUSG00000088397 ENSMUST00000157772 Gm26311 snoRNA Interval_44276 chr13 43289143 43289386 + 0 NA intron (ENSMUSG00000051335.6, intron 1 of 1) protein_coding-intron (ENSMUSG00000051335.6, intron 1 of 1) 14141 ENSMUSG00000051335.6 ENSMUSG00000051335 ENSMUST00000222779 Gfod1 protein_coding Interval_31910 chr11 103772822 103774568 + 0 NA promoter-TSS (ENSMUSG00000000125.5) protein_coding-promoter-TSS (ENSMUSG00000000125.5) -455 ENSMUSG00000000125.5 ENSMUSG00000000125 ENSMUST00000000127 Wnt3 protein_coding Interval_59790 chr15 59294092 59295352 + 0 NA Intergenic Intergenic -16131 ENSMUSG00000098528.1 ENSMUSG00000098528 ENSMUST00000184208 Zfp572 transcribed_processed_pseudogene Interval_88937 chr2 13217969 13218268 + 0 NA TTS (ENSMUSG00000026727.10) protein_coding-TTS (ENSMUSG00000026727.10) -8710 ENSMUSG00000099246.1 ENSMUSG00000099246 ENSMUST00000184950 Gm27540 misc_RNA Interval_18844 chr10 91222941 91223669 + 0 NA Intergenic Intergenic -2686 ENSMUSG00000111544.1 ENSMUSG00000111544 ENSMUST00000216451 4930534H03Rik lincRNA Interval_122179 chr5 18916656 18917307 + 0 NA Intergenic Intergenic 52404 ENSMUSG00000089364.1 ENSMUSG00000089364 ENSMUST00000158739 Gm23822 snoRNA Interval_78441 chr18 12874406 12874895 + 0 NA intron (ENSMUSG00000044252.18, intron 2 of 7) protein_coding-intron (ENSMUSG00000044252.18, intron 14 of 27) 12221 ENSMUSG00000117494.1 ENSMUSG00000117494 ENSMUST00000234213 Gm49970 antisense Interval_7713 chr1 133226106 133228307 + 0 NA intron (ENSMUSG00000041757.17, intron 1 of 22) protein_coding-intron (ENSMUSG00000041757.17, intron 1 of 22) -29336 ENSMUSG00000041757.17 ENSMUSG00000041757 ENSMUST00000190208 Plekha6 protein_coding Interval_68437 chr16 76532050 76532593 + 0 NA Intergenic Intergenic -16474 ENSMUSG00000116701.1 ENSMUSG00000116701 ENSMUST00000232268 Gm30726 lincRNA Interval_27472 chr11 68080783 68081676 + 0 NA intron (ENSMUSG00000020903.13, intron 5 of 6) protein_coding-intron (ENSMUSG00000020903.13, intron 6 of 7) 14735 ENSMUSG00000083924.1 ENSMUSG00000083924 ENSMUST00000120312 Gm12304 processed_pseudogene Interval_146625 chr7 48834946 48835678 + 0 NA TTS (ENSMUSG00000030470.15) protein_coding-TTS (ENSMUSG00000030470.15) 4248 ENSMUSG00000030470.15 ENSMUSG00000030470 ENSMUST00000208050 Csrp3 protein_coding Interval_172580 chrX 37048161 37049647 + 0 NA promoter-TSS (ENSMUSG00000044400.1) protein_coding-promoter-TSS (ENSMUSG00000044400.1) 59 ENSMUSG00000044400.1 ENSMUSG00000044400 ENSMUST00000060057 Sowahd protein_coding Interval_40251 chr12 102771467 102772467 + 0 NA intron (ENSMUSG00000041712.7, intron 10 of 10) protein_coding-intron (ENSMUSG00000041712.7, intron 10 of 10) -7255 ENSMUSG00000114106.1 ENSMUSG00000114106 ENSMUST00000221771 Gm47042 processed_pseudogene Interval_118556 chr4 132484806 132485597 + 0 NA Intergenic Intergenic -21870 ENSMUSG00000066042.4 ENSMUSG00000066042 ENSMUST00000123604 Med18 protein_coding Interval_122762 chr5 25204375 25204665 + 0 NA intron (ENSMUSG00000028938.9, intron 6 of 8) protein_coding-intron (ENSMUSG00000028938.9, intron 6 of 8) -15877 ENSMUSG00000088842.1 ENSMUSG00000088842 ENSMUST00000158217 Gm26356 misc_RNA Interval_16450 chr10 62946557 62947951 + 0 NA TTS (ENSMUSG00000071253.8) protein_coding-TTS (ENSMUSG00000071253.8) 4812 ENSMUSG00000071253.8 ENSMUSG00000071253 ENSMUST00000152350 Slc25a16 protein_coding Interval_80019 chr18 36678791 36679881 + 0 NA promoter-TSS (ENSMUSG00000117679.1) protein_coding-promoter-TSS (ENSMUSG00000117679.1) 121 ENSMUSG00000033272.12 ENSMUSG00000033272 ENSMUST00000185899 Slc35a4 protein_coding Interval_121269 chr4 154540589 154541837 + 0 NA intron (ENSMUSG00000039410.16, intron 1 of 2) protein_coding-intron (ENSMUSG00000039410.16, intron 1 of 16) -9069 ENSMUSG00000086565.1 ENSMUSG00000086565 ENSMUST00000143888 Gm13133 antisense Interval_10060 chr1 165491407 165491699 + 0 NA intron (ENSMUSG00000026567.16, intron 2 of 33) protein_coding-intron (ENSMUSG00000026567.16, intron 1 of 33) -1869 ENSMUSG00000103059.1 ENSMUSG00000103059 ENSMUST00000192239 Gm18186 processed_pseudogene Interval_111312 chr4 18427780 18428405 + 0 NA intron (ENSMUSG00000087402.1, intron 1 of 10) processed_transcript-intron (ENSMUSG00000087402.1, intron 1 of 10) 20743 ENSMUSG00000087402.1 ENSMUSG00000087402 ENSMUST00000133363 Gm11867 processed_transcript Interval_128459 chr5 113437176 113438661 + 0 NA Intergenic Intergenic 80624 ENSMUSG00000053873.1 ENSMUSG00000053873 ENSMUST00000066573 Aym1 protein_coding Interval_32491 chr11 107872941 107873245 + 0 NA Intergenic Intergenic 21348 ENSMUSG00000098991.1 ENSMUSG00000098991 ENSMUST00000184579 Gm27595 rRNA Interval_20776 chr10 120898357 120899342 + 0 NA promoter-TSS (ENSMUSG00000086522.1) bidirectional_promoter_lncRNA-promoter-TSS (ENSMUSG00000086522.1) -308 ENSMUSG00000086522.1 ENSMUSG00000086522 ENSMUST00000145987 Gm4473 bidirectional_promoter_lncRNA Interval_158363 chr8 82937961 82938834 + 0 NA intron (ENSMUSG00000047747.10, intron 1 of 1) protein_coding-intron (ENSMUSG00000047747.10, intron 1 of 6) -14115 ENSMUSG00000109600.1 ENSMUSG00000109600 ENSMUST00000211678 Gm18212 processed_pseudogene Interval_37296 chr12 64917449 64918492 + 0 NA promoter-TSS (ENSMUSG00000047227.5) protein_coding-promoter-TSS (ENSMUSG00000047227.5) -2814 ENSMUSG00000047227.5 ENSMUSG00000047227 ENSMUST00000220928 Gm527 protein_coding Interval_117211 chr4 120612190 120612595 + 0 NA Intergenic Intergenic -3448 ENSMUSG00000086187.1 ENSMUSG00000086187 ENSMUST00000148457 Gm12860 lincRNA Interval_63330 chr15 100354168 100354580 + 0 NA intron (ENSMUSG00000056487.8, intron 1 of 1) protein_coding-intron (ENSMUSG00000093789.3, intron 1 of 3) 1174 ENSMUSG00000056487.8 ENSMUSG00000056487 ENSMUST00000176287 Mettl7a2 protein_coding Interval_122475 chr5 23346875 23347988 + 0 NA promoter-TSS (ENSMUSG00000105254.1) lincRNA-promoter-TSS (ENSMUSG00000105254.1) -157 ENSMUSG00000105254.1 ENSMUSG00000105254 ENSMUST00000199688 Gm42951 lincRNA Interval_87941 chr19 57242764 57244724 + 0 NA intron (ENSMUSG00000025085.16, intron 1 of 20) protein_coding-intron (ENSMUSG00000025085.16, intron 1 of 6) -30216 ENSMUSG00000117684.1 ENSMUSG00000117684 ENSMUST00000237596 4930449E18Rik antisense Interval_86585 chr19 41895181 41896606 + 0 NA intron (ENSMUSG00000035049.4, intron 1 of 33) protein_coding-intron (ENSMUSG00000035049.4, intron 1 of 33) 280 ENSMUSG00000035049.4 ENSMUSG00000035049 ENSMUST00000038677 Rrp12 protein_coding Interval_52774 chr14 49721378 49721843 + 0 NA intron (ENSMUSG00000036242.15, intron 5 of 7) protein_coding-intron (ENSMUSG00000036242.15, intron 5 of 7) -1042 ENSMUSG00000115787.1 ENSMUSG00000115787 ENSMUST00000226994 Gm36146 antisense Interval_144382 chr7 24817252 24818337 + 0 NA Intergenic Intergenic -1001 ENSMUSG00000011350.15 ENSMUSG00000011350 ENSMUST00000155799 Gm5893 processed_transcript Interval_24812 chr11 39480770 39481014 + 0 NA Intergenic Intergenic 246820 ENSMUSG00000083806.1 ENSMUSG00000083806 ENSMUST00000117479 Gm12131 processed_pseudogene Interval_119 GL456239.1 37405 39892 + 0 NA NA NA NA NA Interval_66420 chr16 33754887 33756589 + 0 NA promoter-TSS (ENSMUSG00000075254.12) protein_coding-promoter-TSS (ENSMUSG00000075254.12) -38299 ENSMUSG00000022824.12 ENSMUSG00000022824 ENSMUST00000023520 Muc13 protein_coding Interval_69081 chr16 90504913 90505357 + 0 NA Intergenic Intergenic 45474 ENSMUSG00000116753.1 ENSMUSG00000116753 ENSMUST00000232652 Gm36001 lincRNA Interval_17957 chr10 81064709 81064878 + 0 NA Intergenic Intergenic -4649 ENSMUSG00000004937.6 ENSMUSG00000004937 ENSMUST00000220202 Sgta protein_coding Interval_150206 chr7 108043606 108043787 + 0 NA Intergenic Intergenic -6997 ENSMUSG00000043855.7 ENSMUSG00000043855 ENSMUST00000063151 Olfr479 protein_coding Interval_147577 chr7 68440461 68440637 + 0 NA intron (ENSMUSG00000109298.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000108828.1, intron 2 of 6) 1176 ENSMUSG00000109298.1 ENSMUSG00000109298 ENSMUST00000209009 Gm44886 lincRNA Interval_129908 chr5 123026593 123027831 + 0 NA intron (ENSMUSG00000049686.14, intron 1 of 1) protein_coding-intron (ENSMUSG00000049686.14, intron 1 of 2) -8788 ENSMUSG00000105107.1 ENSMUSG00000105107 ENSMUST00000197455 Gm43412 TEC Interval_112051 chr4 33547073 33547299 + 0 NA Intergenic Intergenic 81775 ENSMUSG00000096184.1 ENSMUSG00000096184 ENSMUST00000180209 Gm23304 miRNA Interval_21296 chr10 127707526 127709335 + 0 NA intron (ENSMUSG00000025401.9, intron 7 of 26) protein_coding-intron (ENSMUSG00000025401.9, intron 7 of 26) -10898 ENSMUSG00000025401.9 ENSMUSG00000025401 ENSMUST00000219882 Myo1a protein_coding Interval_85971 chr19 34396237 34397061 + 0 NA promoter-TSS (ENSMUSG00000076300.1) miRNA-promoter-TSS (ENSMUSG00000076300.1) -894 ENSMUSG00000076300.1 ENSMUSG00000076300 ENSMUST00000102345 Gm23060 miRNA Interval_14336 chr10 30998565 30998947 + 0 NA Intergenic Intergenic -56271 ENSMUSG00000094008.1 ENSMUSG00000094008 ENSMUST00000178825 Gm24168 snRNA Interval_37293 chr12 64897313 64897867 + 0 NA Intergenic Intergenic -19962 ENSMUSG00000113075.1 ENSMUSG00000113075 ENSMUST00000223350 Rpl7a-ps1 processed_pseudogene Interval_107144 chr3 103884932 103886652 + 0 NA promoter-TSS (ENSMUSG00000027843.13) protein_coding-promoter-TSS (ENSMUSG00000027843.13) -280 ENSMUSG00000027843.13 ENSMUSG00000027843 ENSMUST00000126548 Ptpn22 protein_coding Interval_123090 chr5 29604271 29604580 + 0 NA intron (ENSMUSG00000039000.8, intron 9 of 13) protein_coding-intron (ENSMUSG00000039000.8, intron 9 of 22) -26488 ENSMUSG00000039000.8 ENSMUSG00000039000 ENSMUST00000199598 Ube3c protein_coding Interval_41112 chr12 111260773 111261183 + 0 NA intron (ENSMUSG00000021277.16, intron 5 of 5) protein_coding-intron (ENSMUSG00000021277.16, intron 11 of 11) 12495 ENSMUSG00000021277.16 ENSMUSG00000021277 ENSMUST00000143395 Traf3 protein_coding Interval_53031 chr14 53665810 53666495 + 0 NA promoter-TSS (ENSMUSG00000094828.5) TR_V_gene-promoter-TSS (ENSMUSG00000094828.5) -75 ENSMUSG00000094828.5 ENSMUSG00000094828 ENSMUST00000183835 Trav3-3 TR_V_gene Interval_143153 chr7 3705732 3709775 + 0 NA TTS (ENSMUSG00000006333.14) protein_coding-TTS (ENSMUSG00000006333.14) 3389 ENSMUSG00000006333.14 ENSMUSG00000006333 ENSMUST00000136858 Rps9 protein_coding Interval_83690 chr19 3747589 3747824 + 0 NA Intergenic Intergenic -5169 ENSMUSG00000117773.1 ENSMUSG00000117773 ENSMUST00000235154 Gm50375 lincRNA Interval_80341 chr18 39533539 39533910 + 0 NA Intergenic Intergenic -14303 ENSMUSG00000024431.15 ENSMUSG00000024431 ENSMUST00000150483 Nr3c1 protein_coding Interval_166294 chr9 58128941 58129533 + 0 NA promoter-TSS (ENSMUSG00000032327.14) protein_coding-promoter-TSS (ENSMUSG00000032327.14) -4838 ENSMUSG00000032327.14 ENSMUSG00000032327 ENSMUST00000134450 Stra6 protein_coding Interval_2890 chr1 48001836 48003627 + 0 NA Intergenic Intergenic -86916 ENSMUSG00000101996.1 ENSMUSG00000101996 ENSMUST00000186401 Gm19206 processed_pseudogene Interval_83370 chr18 84657645 84658144 + 0 NA Intergenic Intergenic 1950 ENSMUSG00000092056.2 ENSMUSG00000092056 ENSMUST00000168993 Gm7289 processed_pseudogene Interval_75464 chr17 66754872 66755816 + 0 NA intron (ENSMUSG00000033278.10, intron 18 of 30) protein_coding-intron (ENSMUSG00000033278.10, intron 20 of 32) 16590 ENSMUSG00000114291.1 ENSMUSG00000114291 ENSMUST00000223962 Gm47471 antisense Interval_96282 chr2 121279055 121279988 + 0 NA Intergenic Intergenic -15942 ENSMUSG00000027254.13 ENSMUSG00000027254 ENSMUST00000133283 Map1a protein_coding Interval_166871 chr9 63527112 63528129 + 0 NA intron (ENSMUSG00000037801.13, intron 8 of 20) protein_coding-intron (ENSMUSG00000037801.13, intron 9 of 21) 74797 ENSMUSG00000037801.13 ENSMUSG00000037801 ENSMUST00000170960 Iqch protein_coding Interval_128618 chr5 114332503 114332768 + 0 NA intron (ENSMUSG00000066952.11, intron 9 of 30) protein_coding-intron (ENSMUSG00000066952.11, intron 9 of 28) 17694 ENSMUSG00000066952.11 ENSMUSG00000066952 ENSMUST00000125230 Myo1h protein_coding Interval_165978 chr9 55141913 55142470 + 0 NA Intergenic Intergenic -46821 ENSMUSG00000110793.1 ENSMUSG00000110793 ENSMUST00000216059 Gm7395 processed_pseudogene Interval_100275 chr2 168114792 168115522 + 0 NA intron (ENSMUSG00000118526.2, intron 1 of 7) unitary_pseudogene-intron (ENSMUSG00000118526.2, intron 1 of 7) 280 ENSMUSG00000118526.2 ENSMUSG00000118526 ENSMUST00000239040 AL831766.1 unitary_pseudogene Interval_36291 chr12 40817633 40818492 + 0 NA intron (ENSMUSG00000035954.10, intron 41 of 51) protein_coding-intron (ENSMUSG00000035954.10, intron 41 of 52) -57475 ENSMUSG00000113435.1 ENSMUSG00000113435 ENSMUST00000221545 Gm19441 processed_pseudogene Interval_112451 chr4 41355031 41355257 + 0 NA intron (ENSMUSG00000028437.14, intron 1 of 2) protein_coding-intron (ENSMUSG00000028437.14, intron 1 of 6) -9193 ENSMUSG00000088528.1 ENSMUSG00000088528 ENSMUST00000157903 Gm26084 snRNA Interval_72990 chr17 34003570 34004312 + 0 NA Intergenic Intergenic -3690 ENSMUSG00000061232.16 ENSMUSG00000061232 ENSMUST00000236877 H2-K1 protein_coding Interval_77797 chr18 3690099 3690948 + 0 NA Intergenic Intergenic 74242 ENSMUSG00000117506.1 ENSMUSG00000117506 ENSMUST00000234745 Gm50091 TEC Interval_144885 chr7 28756184 28756635 + 0 NA intron (ENSMUSG00000096257.2, intron 1 of 4) protein_coding-intron (ENSMUSG00000096257.2, intron 1 of 4) 235 ENSMUSG00000096257.2 ENSMUSG00000096257 ENSMUST00000178767 Ccer2 protein_coding Interval_145787 chr7 38267166 38267786 + 0 NA TTS (ENSMUSG00000030423.7) protein_coding-TTS (ENSMUSG00000030423.7) 3851 ENSMUSG00000030423.7 ENSMUSG00000030423 ENSMUST00000206045 Pop4 protein_coding Interval_5641 chr1 90493179 90493886 + 0 NA Intergenic Intergenic -26964 ENSMUSG00000103292.1 ENSMUSG00000103292 ENSMUST00000192105 Gm35048 TEC Interval_91027 chr2 34519475 34520057 + 0 NA intron (ENSMUSG00000038696.14, intron 6 of 11) protein_coding-intron (ENSMUSG00000038696.14, intron 5 of 10) -45233 ENSMUSG00000081992.1 ENSMUSG00000081992 ENSMUST00000119822 Gm13408 processed_pseudogene Interval_37550 chr12 69807436 69809743 + 0 NA exon (ENSMUSG00000034761.15, exon 7 of 8) protein_coding-exon (ENSMUSG00000034761.15, exon 7 of 8) -11058 ENSMUSG00000113497.1 ENSMUSG00000113497 ENSMUST00000222163 Gm18030 processed_pseudogene Interval_120037 chr4 141473509 141475023 + 0 NA exon (ENSMUSG00000040761.16, exon 11 of 15) protein_coding-exon (ENSMUSG00000040761.16, exon 11 of 15) 14046 ENSMUSG00000040761.16 ENSMUSG00000040761 ENSMUST00000152081 Spen protein_coding Interval_122013 chr5 13959759 13960203 + 0 NA Intergenic Intergenic -57107 ENSMUSG00000089244.1 ENSMUSG00000089244 ENSMUST00000158619 Gm24054 miRNA Interval_152168 chr7 130335391 130336132 + 0 NA intron (ENSMUSG00000030849.18, intron 2 of 6) protein_coding-intron (ENSMUSG00000030849.18, intron 2 of 6) 18601 ENSMUSG00000082988.3 ENSMUSG00000082988 ENSMUST00000121836 Gm5903 processed_pseudogene Interval_11351 chr1 181163009 181164557 + 0 NA intron (ENSMUSG00000062169.13, intron 3 of 3) protein_coding-intron (ENSMUSG00000062169.13, intron 3 of 3) 19090 ENSMUSG00000062169.13 ENSMUSG00000062169 ENSMUST00000111057 Cnih4 protein_coding Interval_76423 chr17 80099552 80099795 + 0 NA Intergenic Intergenic -5264 ENSMUSG00000088276.1 ENSMUSG00000088276 ENSMUST00000157651 Gm23125 snRNA Interval_24840 chr11 40207055 40207255 + 0 NA intron (ENSMUSG00000085301.1, intron 5 of 7) lincRNA-intron (ENSMUSG00000085301.1, intron 5 of 7) 198961 ENSMUSG00000085301.1 ENSMUSG00000085301 ENSMUST00000130945 Gm12132 lincRNA Interval_151066 chr7 118262457 118263808 + 0 NA Intergenic Intergenic 12231 ENSMUSG00000108980.1 ENSMUSG00000108980 ENSMUST00000207365 Gm45155 lincRNA Interval_137165 chr6 68812857 68813973 + 0 NA Intergenic Intergenic 2746 ENSMUSG00000104849.1 ENSMUSG00000104849 ENSMUST00000197261 Gm42924 IG_V_pseudogene Interval_61008 chr15 78736070 78736685 + 0 NA Intergenic Intergenic 30787 ENSMUSG00000018169.12 ENSMUSG00000018169 ENSMUST00000128389 Mfng protein_coding Interval_123460 chr5 32681842 32682555 + 0 NA intron (ENSMUSG00000014932.15, intron 11 of 11) protein_coding-intron (ENSMUSG00000014932.15, intron 11 of 11) -13551 ENSMUSG00000118435.2 ENSMUSG00000118435 ENSMUST00000238745 Gm50482 unitary_pseudogene Interval_18706 chr10 89481345 89482615 + 0 NA intron (ENSMUSG00000047638.15, intron 3 of 8) protein_coding-intron (ENSMUSG00000047638.15, intron 3 of 8) -48138 ENSMUSG00000074802.11 ENSMUSG00000074802 ENSMUST00000219073 Gas2l3 protein_coding Interval_38618 chr12 80585129 80585420 + 0 NA exon (ENSMUSG00000021130.8, exon 1 of 1) protein_coding-exon (ENSMUSG00000021130.8, exon 1 of 1) 11866 ENSMUSG00000112421.1 ENSMUSG00000112421 ENSMUST00000220065 4933406B15Rik antisense Interval_84513 chr19 12005487 12006591 + 0 NA Intergenic Intergenic -14136 ENSMUSG00000109030.1 ENSMUSG00000109030 ENSMUST00000208900 Olfr1421-ps1 unprocessed_pseudogene Interval_130090 chr5 124204594 124206237 + 0 NA intron (ENSMUSG00000029406.15, intron 2 of 24) protein_coding-intron (ENSMUSG00000029406.15, intron 1 of 23) 9773 ENSMUSG00000089842.2 ENSMUSG00000089842 ENSMUST00000198466 Pitpnm2os2 antisense Interval_130749 chr5 130135401 130136633 + 0 NA TTS (ENSMUSG00000034118.15) protein_coding-TTS (ENSMUSG00000034118.15) 4690 ENSMUSG00000107216.1 ENSMUSG00000107216 ENSMUST00000201281 2210412B16Rik TEC Interval_73815 chr17 44038740 44038967 + 0 NA exon (ENSMUSG00000039601.16, exon 4 of 4) protein_coding-exon (ENSMUSG00000039601.16, exon 4 of 4) 12143 ENSMUSG00000039601.16 ENSMUSG00000039601 ENSMUST00000229939 Rcan2 protein_coding Interval_71245 chr17 21541755 21542168 + 0 NA intron (ENSMUSG00000051341.6, intron 2 of 4) protein_coding-intron (ENSMUSG00000051341.6, intron 2 of 4) -6083 ENSMUSG00000097781.1 ENSMUSG00000097781 ENSMUST00000180842 9330136K24Rik lincRNA Interval_44945 chr13 50451581 50453932 + 0 NA intron (ENSMUSG00000101136.1, intron 1 of 1) antisense-intron (ENSMUSG00000101136.1, intron 1 of 1) -8844 ENSMUSG00000114559.1 ENSMUSG00000114559 ENSMUST00000225905 Gm47429 protein_coding Interval_11930 chr1 187250701 187251462 + 0 NA intron (ENSMUSG00000039210.16, intron 6 of 6) protein_coding-intron (ENSMUSG00000039210.16, intron 5 of 9) 14624 ENSMUSG00000104394.2 ENSMUSG00000104394 ENSMUST00000193542 Gm37254 TEC Interval_129216 chr5 118256453 118257287 + 0 NA intron (ENSMUSG00000032840.7, intron 2 of 4) protein_coding-intron (ENSMUSG00000032840.7, intron 2 of 4) -9579 ENSMUSG00000095477.1 ENSMUSG00000095477 ENSMUST00000104098 Gm25076 snoRNA Interval_41982 chr13 5860572 5861891 + 0 NA promoter-TSS (ENSMUSG00000000078.7) protein_coding-promoter-TSS (ENSMUSG00000000078.7) -310 ENSMUSG00000000078.7 ENSMUSG00000000078 ENSMUST00000221734 Klf6 protein_coding Interval_90107 chr2 28106199 28106696 + 0 NA intron (ENSMUSG00000086425.7, intron 2 of 3) lincRNA-intron (ENSMUSG00000086425.7, intron 2 of 7) 10964 ENSMUSG00000086425.7 ENSMUSG00000086425 ENSMUST00000128888 F730016J06Rik lincRNA Interval_174768 chrX 166351546 166352063 + 0 NA intron (ENSMUSG00000031342.17, intron 1 of 1) protein_coding-intron (ENSMUSG00000031342.17, intron 1 of 6) 7112 ENSMUSG00000031342.17 ENSMUSG00000031342 ENSMUST00000129731 Gpm6b protein_coding Interval_56786 chr14 122079450 122079641 + 0 NA intron (ENSMUSG00000115121.1, intron 3 of 3) lincRNA-intron (ENSMUSG00000115121.1, intron 1 of 4) 11681 ENSMUSG00000115121.1 ENSMUSG00000115121 ENSMUST00000226723 Gm49236 lincRNA Interval_170601 chr9 109176214 109178244 + 0 NA Intergenic Intergenic -15209 ENSMUSG00000047237.13 ENSMUSG00000047237 ENSMUST00000199540 Fbxw21 protein_coding Interval_81054 chr18 53353086 53353305 + 0 NA intron (ENSMUSG00000024535.16, intron 3 of 6) protein_coding-intron (ENSMUSG00000024535.16, intron 3 of 7) 64920 ENSMUSG00000024538.8 ENSMUSG00000024538 ENSMUST00000025419 Ppic protein_coding Interval_139120 chr6 95500059 95500292 + 0 NA intron (ENSMUSG00000061838.7, intron 9 of 10) protein_coding-intron (ENSMUSG00000061838.7, intron 9 of 10) 157293 ENSMUSG00000061838.7 ENSMUSG00000061838 ENSMUST00000203109 Suclg2 protein_coding Interval_35156 chr12 17650827 17651060 + 0 NA Intergenic Intergenic -5738 ENSMUSG00000088939.1 ENSMUSG00000088939 ENSMUST00000158314 Gm25925 misc_RNA Interval_122384 chr5 21847111 21847561 + 0 NA promoter-TSS (ENSMUSG00000029015.9) protein_coding-promoter-TSS (ENSMUSG00000029015.9) -26819 ENSMUSG00000029015.9 ENSMUSG00000029015 ENSMUST00000150012 Slc26a5 protein_coding Interval_49314 chr13 110639478 110639775 + 0 NA intron (ENSMUSG00000109853.1, intron 4 of 4) lincRNA-intron (ENSMUSG00000109853.1, intron 5 of 5) 11630 ENSMUSG00000109853.1 ENSMUSG00000109853 ENSMUST00000211420 Gm33045 lincRNA Interval_157673 chr8 72215065 72215298 + 0 NA Intergenic Intergenic -1545 ENSMUSG00000079016.1 ENSMUSG00000079016 ENSMUST00000109987 Gm11034 protein_coding Interval_48163 chr13 96859349 96859631 + 0 NA intron (ENSMUSG00000109561.1, intron 17 of 24) protein_coding-intron (ENSMUSG00000109561.1, intron 13 of 19) 11116 ENSMUSG00000113046.1 ENSMUSG00000113046 ENSMUST00000221106 Gm48579 processed_pseudogene Interval_102031 chr3 15332182 15332383 + 0 NA promoter-TSS (ENSMUSG00000078783.1) protein_coding-promoter-TSS (ENSMUSG00000078783.1) 20 ENSMUSG00000078783.1 ENSMUSG00000078783 ENSMUST00000108361 Gm9733 protein_coding Interval_117347 chr4 123152222 123152507 + 0 NA Intergenic Intergenic -12434 ENSMUSG00000028651.12 ENSMUSG00000028651 ENSMUST00000137778 Ppie protein_coding Interval_130290 chr5 125443566 125444925 + 0 NA intron (ENSMUSG00000037905.13, intron 1 of 3) protein_coding-intron (ENSMUSG00000037905.13, intron 1 of 2) 2495 ENSMUSG00000037905.13 ENSMUSG00000037905 ENSMUST00000198811 Bri3bp protein_coding Interval_172550 chrX 36574534 36574795 + 0 NA Intergenic Intergenic -23542 ENSMUSG00000006373.10 ENSMUSG00000006373 ENSMUST00000073339 Pgrmc1 protein_coding Interval_80396 chr18 41750197 41750447 + 0 NA intron (ENSMUSG00000117745.1, intron 3 of 3) lincRNA-intron (ENSMUSG00000117745.1, intron 3 of 3) 110528 ENSMUSG00000117708.1 ENSMUSG00000117708 ENSMUST00000237940 Gm18530 processed_pseudogene Interval_116886 chr4 117974871 117975234 + 0 NA promoter-TSS (ENSMUSG00000086554.1) antisense-promoter-TSS (ENSMUSG00000086554.1) 16 ENSMUSG00000086554.1 ENSMUSG00000086554 ENSMUST00000146982 9530034E10Rik antisense Interval_89712 chr2 24918870 24920054 + 0 NA intron (ENSMUSG00000036893.17, intron 1 of 4) protein_coding-intron (ENSMUSG00000036893.17, intron 1 of 25) 8669 ENSMUSG00000026972.15 ENSMUSG00000026972 ENSMUST00000133396 Arrdc1 protein_coding Interval_114300 chr4 71815144 71815364 + 0 NA Intergenic Intergenic -52734 ENSMUSG00000081117.1 ENSMUSG00000081117 ENSMUST00000122357 Gm11233 processed_pseudogene Interval_63697 chr15 102926472 102927193 + 0 NA intron (ENSMUSG00000001655.6, intron 1 of 1) protein_coding-intron (ENSMUSG00000001655.6, intron 1 of 1) 5729 ENSMUSG00000001655.6 ENSMUSG00000001655 ENSMUST00000001700 Hoxc13 protein_coding Interval_89634 chr2 23619988 23620572 + 0 NA Intergenic Intergenic -59938 ENSMUSG00000083729.1 ENSMUSG00000083729 ENSMUST00000121498 Sh3d2c-ps1 processed_pseudogene Interval_40110 chr12 101551395 101552294 + 0 NA TTS (ENSMUSG00000047014.7) protein_coding-TTS (ENSMUSG00000047014.7) -2235 ENSMUSG00000077058.1 ENSMUSG00000077058 ENSMUST00000103870 Gm24542 miRNA Interval_87926 chr19 57150231 57150550 + 0 NA intron (ENSMUSG00000025085.16, intron 4 of 20) protein_coding-intron (ENSMUSG00000025085.16, intron 4 of 25) -123570 ENSMUSG00000117684.1 ENSMUSG00000117684 ENSMUST00000237596 4930449E18Rik antisense Interval_160020 chr8 105834940 105836285 + 0 NA intron (ENSMUSG00000031893.7, intron 2 of 13) protein_coding-intron (ENSMUSG00000031893.7, intron 2 of 15) 7881 ENSMUSG00000031893.7 ENSMUSG00000031893 ENSMUST00000211949 Tsnaxip1 protein_coding Interval_85427 chr19 25729385 25731011 + 0 NA Intergenic Intergenic 57787 ENSMUSG00000048138.10 ENSMUSG00000048138 ENSMUST00000053068 Dmrt2 protein_coding Interval_11060 chr1 179065165 179065421 + 0 NA intron (ENSMUSG00000055067.15, intron 4 of 7) protein_coding-intron (ENSMUSG00000055067.15, intron 5 of 8) -147679 ENSMUSG00000089713.1 ENSMUSG00000089713 ENSMUST00000162545 Gm16564 antisense Interval_69309 chr16 92115768 92116671 + 0 NA intron (ENSMUSG00000116930.1, intron 2 of 3) protein_coding-intron (ENSMUSG00000116930.1, intron 2 of 3) -10069 ENSMUSG00000116747.1 ENSMUSG00000116747 ENSMUST00000231220 Gm41496 lincRNA Interval_127946 chr5 109703785 109704751 + 0 NA Intergenic Intergenic -13227 ENSMUSG00000072763.2 ENSMUSG00000072763 ENSMUST00000092720 5430403G16Rik protein_coding Interval_139446 chr6 100232433 100233547 + 0 NA TTS (ENSMUSG00000072872.3) protein_coding-TTS (ENSMUSG00000072872.3) -15142 ENSMUSG00000108269.1 ENSMUSG00000108269 ENSMUST00000203798 Gm18422 transcribed_processed_pseudogene Interval_29493 chr11 84424388 84424801 + 0 NA intron (ENSMUSG00000018697.14, intron 8 of 8) protein_coding-intron (ENSMUSG00000018697.14, intron 12 of 12) 88928 ENSMUSG00000018697.14 ENSMUSG00000018697 ENSMUST00000148434 Aatf protein_coding Interval_162416 chr8 128448086 128448369 + 0 NA intron (ENSMUSG00000025810.9, intron 6 of 7) protein_coding-intron (ENSMUSG00000025810.9, intron 6 of 16) 88830 ENSMUSG00000025810.9 ENSMUSG00000025810 ENSMUST00000212933 Nrp1 protein_coding Interval_154794 chr8 23416197 23416536 + 0 NA intron (ENSMUSG00000031548.7, intron 1 of 2) protein_coding-intron (ENSMUSG00000031548.7, intron 1 of 2) 4864 ENSMUSG00000031548.7 ENSMUSG00000031548 ENSMUST00000033952 Sfrp1 protein_coding Interval_14479 chr10 34197264 34197601 + 0 NA intron (ENSMUSG00000039497.8, intron 1 of 2) protein_coding-intron (ENSMUSG00000039497.8, intron 1 of 5) 16646 ENSMUSG00000111876.1 ENSMUSG00000111876 ENSMUST00000216782 Gm18346 processed_pseudogene Interval_17133 chr10 71857238 71858186 + 0 NA Intergenic Intergenic -40324 ENSMUSG00000077142.1 ENSMUSG00000077142 ENSMUST00000103954 Gm22937 snoRNA Interval_17359 chr10 76062331 76062661 + 0 NA intron (ENSMUSG00000020226.9, intron 12 of 14) protein_coding-intron (ENSMUSG00000020226.9, intron 12 of 14) -16121 ENSMUSG00000086798.1 ENSMUSG00000086798 ENSMUST00000124320 Gm16222 antisense Interval_75184 chr17 64484059 64484267 + 0 NA Intergenic Intergenic 43357 ENSMUSG00000098984.1 ENSMUSG00000098984 ENSMUST00000185032 Mir6420 miRNA Interval_118144 chr4 129212533 129212719 + 0 NA promoter-TSS (ENSMUSG00000028811.12) protein_coding-promoter-TSS (ENSMUSG00000028811.12) 382 ENSMUSG00000028811.12 ENSMUSG00000028811 ENSMUST00000147248 Yars protein_coding Interval_80747 chr18 46793847 46794096 + 0 NA Intergenic Intergenic 22646 ENSMUSG00000117372.1 ENSMUSG00000117372 ENSMUST00000234567 Gm49972 TEC Interval_109009 chr3 134932249 134932415 + 0 NA exon (ENSMUSG00000028172.5, exon 5 of 5) protein_coding-exon (ENSMUSG00000028172.5, exon 5 of 5) -30789 ENSMUSG00000105559.1 ENSMUSG00000105559 ENSMUST00000200368 Gm4860 processed_pseudogene Interval_40594 chr12 105906411 105907079 + 0 NA Intergenic Intergenic 6904 ENSMUSG00000113835.1 ENSMUSG00000113835 ENSMUST00000220934 Gm19554 lincRNA Interval_20431 chr10 117580048 117580255 + 0 NA Intergenic Intergenic 9184 ENSMUSG00000112081.1 ENSMUSG00000112081 ENSMUST00000218739 Gm9004 processed_pseudogene Interval_103928 chr3 55061475 55061888 + 0 NA exon (ENSMUSG00000106589.1, exon 5 of 8) antisense-exon (ENSMUSG00000106589.1, exon 5 of 8) -4025 ENSMUSG00000105977.1 ENSMUSG00000105977 ENSMUST00000196588 Gm43555 processed_pseudogene Interval_59291 chr15 50830790 50831220 + 0 NA exon (ENSMUSG00000038679.16, exon 4 of 7) protein_coding-exon (ENSMUSG00000038679.16, exon 4 of 7) 58109 ENSMUSG00000084458.1 ENSMUSG00000084458 ENSMUST00000122509 Mir1907 miRNA Interval_49585 chr13 113235477 113235774 + 0 NA Intergenic Intergenic 25966 ENSMUSG00000042379.8 ENSMUSG00000042379 ENSMUST00000038144 Esm1 protein_coding Interval_83932 chr19 5688108 5690141 + 0 NA promoter-TSS (ENSMUSG00000004054.9) protein_coding-promoter-TSS (ENSMUSG00000004054.9) -10 ENSMUSG00000004054.9 ENSMUSG00000004054 ENSMUST00000235661 Map3k11 protein_coding Interval_171391 chr9 117315088 117315333 + 0 NA intron (ENSMUSG00000039607.17, intron 3 of 15) protein_coding-intron (ENSMUSG00000039607.17, intron 2 of 14) 62674 ENSMUSG00000079669.2 ENSMUSG00000079669 ENSMUST00000172075 Gm17396 processed_transcript Interval_91512 chr2 40268572 40269160 + 0 NA Intergenic Intergenic -18296 ENSMUSG00000081577.1 ENSMUSG00000081577 ENSMUST00000118767 Gm13455 processed_pseudogene Interval_117670 chr4 125478213 125478775 + 0 NA Intergenic Intergenic -12206 ENSMUSG00000001985.9 ENSMUSG00000001985 ENSMUST00000030676 Grik3 protein_coding Interval_16831 chr10 68965151 68965570 + 0 NA Intergenic Intergenic -60860 ENSMUSG00000112333.1 ENSMUSG00000112333 ENSMUST00000219825 1700048P04Rik lincRNA Interval_34913 chr12 13345376 13345732 + 0 NA intron (ENSMUSG00000020576.10, intron 21 of 51) protein_coding-intron (ENSMUSG00000020576.10, intron 21 of 51) 80163 ENSMUSG00000113476.1 ENSMUSG00000113476 ENSMUST00000220829 Gm48309 TEC Interval_55837 chr14 101328404 101328653 + 0 NA Intergenic Intergenic -15016 ENSMUSG00000115538.1 ENSMUSG00000115538 ENSMUST00000227762 Hspd1-ps5 processed_pseudogene Interval_70705 chr17 13692843 13693550 + 0 NA intron (ENSMUSG00000117063.1, intron 1 of 4) lincRNA-intron (ENSMUSG00000117063.1, intron 1 of 4) -9709 ENSMUSG00000085705.1 ENSMUSG00000085705 ENSMUST00000128138 Gm16046 lincRNA Interval_35817 chr12 30404760 30405029 + 0 NA Intergenic Intergenic -31599 ENSMUSG00000020672.14 ENSMUSG00000020672 ENSMUST00000218489 Sntg2 protein_coding Interval_68828 chr16 87423828 87424211 + 0 NA intron (ENSMUSG00000052299.9, intron 5 of 11) protein_coding-intron (ENSMUSG00000052299.9, intron 5 of 29) -4975 ENSMUSG00000065647.1 ENSMUSG00000065647 ENSMUST00000083713 Gm25896 snoRNA Interval_119197 chr4 136143579 136144821 + 0 NA promoter-TSS (ENSMUSG00000007872.3) protein_coding-promoter-TSS (ENSMUSG00000007872.3) 336 ENSMUSG00000007872.3 ENSMUSG00000007872 ENSMUST00000133946 Id3 protein_coding Interval_139082 chr6 94895005 94895288 + 0 NA Intergenic Intergenic -46313 ENSMUSG00000107940.1 ENSMUSG00000107940 ENSMUST00000204329 Gm44100 processed_pseudogene Interval_73937 chr17 45572364 45574804 + 0 NA promoter-TSS (ENSMUSG00000023944.14) protein_coding-promoter-TSS (ENSMUSG00000023944.14) -329 ENSMUSG00000023944.14 ENSMUSG00000023944 ENSMUST00000130406 Hsp90ab1 protein_coding Interval_10751 chr1 174177157 174177816 + 0 NA intron (ENSMUSG00000026532.7, intron 3 of 51) protein_coding-intron (ENSMUSG00000026532.7, intron 3 of 51) 9784 ENSMUSG00000107114.1 ENSMUSG00000107114 ENSMUST00000201957 Gm43440 unprocessed_pseudogene Interval_60858 chr15 77193473 77194363 + 0 NA intron (ENSMUSG00000033565.18, intron 1 of 3) protein_coding-intron (ENSMUSG00000033565.18, intron 2 of 12) -15654 ENSMUSG00000116185.1 ENSMUSG00000116185 ENSMUST00000230993 Gm49411 TEC Interval_45558 chr13 55847463 55848084 + 0 NA intron (ENSMUSG00000114493.2, intron 2 of 5) antisense-intron (ENSMUSG00000114493.2, intron 2 of 5) -11581 ENSMUSG00000021506.7 ENSMUSG00000021506 ENSMUST00000173618 Pitx1 protein_coding Interval_26732 chr11 60076560 60077368 + 0 NA Intergenic Intergenic -22583 ENSMUSG00000098502.1 ENSMUSG00000098502 ENSMUST00000183502 Gm27511 misc_RNA Interval_137822 chr6 82753513 82754299 + 0 NA intron (ENSMUSG00000000628.10, intron 2 of 17) protein_coding-intron (ENSMUSG00000000628.10, intron 2 of 17) -10376 ENSMUSG00000090293.1 ENSMUSG00000090293 ENSMUST00000168990 Gm17034 antisense Interval_15546 chr10 51235713 51236028 + 0 NA Intergenic Intergenic -2959 ENSMUSG00000111880.1 ENSMUSG00000111880 ENSMUST00000218609 Gm5040 processed_pseudogene Interval_30004 chr11 88639108 88640612 + 0 NA intron (ENSMUSG00000069769.13, intron 5 of 5) protein_coding-intron (ENSMUSG00000069769.13, intron 5 of 13) -49713 ENSMUSG00000069769.13 ENSMUSG00000069769 ENSMUST00000126293 Msi2 protein_coding Interval_80597 chr18 44515558 44515771 + 0 NA intron (ENSMUSG00000071856.10, intron 3 of 16) protein_coding-intron (ENSMUSG00000071856.10, intron 5 of 18) 135162 ENSMUSG00000024472.9 ENSMUSG00000024472 ENSMUST00000025350 Dcp2 protein_coding Interval_88006 chr19 57764426 57765248 + 0 NA intron (ENSMUSG00000054843.9, intron 24 of 28) protein_coding-intron (ENSMUSG00000054843.9, intron 24 of 28) 153803 ENSMUSG00000054843.9 ENSMUSG00000054843 ENSMUST00000077282 Atrnl1 protein_coding Interval_86230 chr19 37965877 37966067 + 0 NA intron (ENSMUSG00000048612.16, intron 19 of 53) protein_coding-intron (ENSMUSG00000048612.16, intron 18 of 52) 77427 ENSMUSG00000048612.16 ENSMUSG00000048612 ENSMUST00000226084 Myof protein_coding Interval_112403 chr4 41063850 41064852 + 0 NA Intergenic Intergenic 14131 ENSMUSG00000088154.1 ENSMUSG00000088154 ENSMUST00000157529 Gm25637 snRNA Interval_24172 chr11 30896235 30896779 + 0 NA intron (ENSMUSG00000020305.13, intron 1 of 9) protein_coding-intron (ENSMUSG00000020305.13, intron 1 of 9) 11091 ENSMUSG00000020305.13 ENSMUSG00000020305 ENSMUST00000148808 Asb3 protein_coding Interval_95942 chr2 118572441 118572987 + 0 NA Intergenic Intergenic -21365 ENSMUSG00000080747.1 ENSMUSG00000080747 ENSMUST00000119095 Gm14016 processed_pseudogene Interval_55805 chr14 100340782 100341183 + 0 NA Intergenic Intergenic 54817 ENSMUSG00000110273.1 ENSMUSG00000110273 ENSMUST00000211525 Gm41231 lincRNA Interval_120543 chr4 149246792 149247292 + 0 NA intron (ENSMUSG00000063077.15, intron 19 of 49) protein_coding-intron (ENSMUSG00000063077.15, intron 17 of 20) 60650 ENSMUSG00000063077.15 ENSMUSG00000063077 ENSMUST00000132072 Kif1b protein_coding Interval_27806 chr11 70095834 70096384 + 0 NA intron (ENSMUSG00000040963.15, intron 2 of 7) protein_coding-intron (ENSMUSG00000040963.15, intron 2 of 8) -1583 ENSMUSG00000040963.15 ENSMUSG00000040963 ENSMUST00000179757 Asgr2 protein_coding Interval_125360 chr5 66424045 66424322 + 0 NA intron (ENSMUSG00000029207.16, intron 5 of 5) protein_coding-intron (ENSMUSG00000029207.16, intron 5 of 17) 7943 ENSMUSG00000106732.1 ENSMUSG00000106732 ENSMUST00000202492 Gm43792 TEC Interval_34672 chr12 8536449 8536778 + 0 NA intron (ENSMUSG00000020600.13, intron 2 of 6) protein_coding-intron (ENSMUSG00000020600.13, intron 2 of 6) 2932 ENSMUSG00000020600.13 ENSMUSG00000020600 ENSMUST00000129465 Slc7a15 protein_coding Interval_98463 chr2 152586794 152587598 + 0 NA Intergenic Intergenic -6884 ENSMUSG00000050645.3 ENSMUSG00000050645 ENSMUST00000053180 Defb19 protein_coding Interval_96488 chr2 125031791 125033586 + 0 NA Intergenic Intergenic -47667 ENSMUSG00000035183.14 ENSMUSG00000035183 ENSMUST00000149963 Slc24a5 protein_coding Interval_15605 chr10 52263665 52264403 + 0 NA intron (ENSMUSG00000019891.15, intron 2 of 2) protein_coding-intron (ENSMUSG00000019891.15, intron 2 of 10) 30397 ENSMUSG00000019891.15 ENSMUSG00000019891 ENSMUST00000218582 Dcbld1 protein_coding Interval_73123 chr17 34934199 34934672 + 0 NA exon (ENSMUSG00000007038.5, exon 5 of 6) protein_coding-exon (ENSMUSG00000007038.5, exon 5 of 6) 2572 ENSMUSG00000007038.5 ENSMUSG00000007038 ENSMUST00000174715 Neu1 protein_coding Interval_47603 chr13 89828599 89828797 + 0 NA exon (ENSMUSG00000089940.1, exon 2 of 2) antisense-exon (ENSMUSG00000089940.1, exon 2 of 2) -88301 ENSMUSG00000021614.16 ENSMUSG00000021614 ENSMUST00000162715 Vcan protein_coding Interval_82324 chr18 70652044 70652954 + 0 NA Intergenic Intergenic -4462 ENSMUSG00000117810.1 ENSMUSG00000117810 ENSMUST00000236578 Gm8934 processed_pseudogene Interval_6893 chr1 120459764 120460006 + 0 NA Intergenic Intergenic 24080 ENSMUSG00000101275.1 ENSMUSG00000101275 ENSMUST00000186237 1700012E03Rik lincRNA Interval_111942 chr4 32706769 32707119 + 0 NA intron (ENSMUSG00000058006.12, intron 33 of 101) protein_coding-intron (ENSMUSG00000058006.12, intron 33 of 101) 49825 ENSMUSG00000058006.12 ENSMUSG00000058006 ENSMUST00000124361 Mdn1 protein_coding Interval_18088 chr10 82254570 82254857 + 0 NA Intergenic Intergenic 12161 ENSMUSG00000111930.1 ENSMUSG00000111930 ENSMUST00000219873 Gm47382 processed_pseudogene Interval_33294 chr11 115746118 115747464 + 0 NA Intergenic Intergenic 17325 ENSMUSG00000084130.1 ENSMUSG00000084130 ENSMUST00000120031 Gm11704 processed_pseudogene Interval_59723 chr15 58913971 58914387 + 0 NA intron (ENSMUSG00000050891.10, intron 1 of 5) protein_coding-intron (ENSMUSG00000050891.10, intron 8 of 11) 1999 ENSMUSG00000050891.10 ENSMUSG00000050891 ENSMUST00000228230 Tatdn1 protein_coding Interval_136275 chr6 52462534 52462792 + 0 NA Intergenic Intergenic -29788 ENSMUSG00000107895.1 ENSMUSG00000107895 ENSMUST00000203771 1700094M24Rik lincRNA Interval_55783 chr14 100054708 100056193 + 0 NA intron (ENSMUSG00000072294.5, intron 3 of 7) protein_coding-intron (ENSMUSG00000072294.5, intron 2 of 6) -155059 ENSMUSG00000072294.5 ENSMUSG00000072294 ENSMUST00000226544 Klf12 protein_coding Interval_95164 chr2 104475416 104476005 + 0 NA intron (ENSMUSG00000027177.14, intron 1 of 16) protein_coding-intron (ENSMUSG00000027177.14, intron 1 of 15) -36458 ENSMUSG00000027177.14 ENSMUSG00000027177 ENSMUST00000132622 Hipk3 protein_coding Interval_47902 chr13 94271160 94271530 + 0 NA intron (ENSMUSG00000021687.14, intron 1 of 8) protein_coding-intron (ENSMUSG00000021687.14, intron 1 of 8) -22672 ENSMUSG00000113494.1 ENSMUSG00000113494 ENSMUST00000220853 Gm48102 lincRNA Interval_115296 chr4 95483781 95483947 + 0 NA promoter-TSS (ENSMUSG00000085835.1) processed_transcript-promoter-TSS (ENSMUSG00000085835.1) -92 ENSMUSG00000085835.1 ENSMUSG00000085835 ENSMUST00000155789 Gm12707 processed_transcript Interval_14939 chr10 41292967 41293550 + 0 NA intron (ENSMUSG00000038417.4, intron 1 of 22) protein_coding-intron (ENSMUSG00000038417.4, intron 1 of 22) 10002 ENSMUSG00000038417.4 ENSMUSG00000038417 ENSMUST00000043814 Fig4 protein_coding Interval_113305 chr4 53326897 53328247 + 0 NA Intergenic Intergenic 19346 ENSMUSG00000083735.1 ENSMUSG00000083735 ENSMUST00000119750 Gm12495 processed_pseudogene Interval_5789 chr1 91833117 91833408 + 0 NA intron (ENSMUSG00000007805.4, intron 1 of 1) protein_coding-intron (ENSMUSG00000007805.4, intron 1 of 1) 10747 ENSMUSG00000101414.1 ENSMUSG00000101414 ENSMUST00000188329 Gm29101 sense_intronic Interval_18468 chr10 86397847 86398182 + 0 NA intron (ENSMUSG00000059602.14, intron 4 of 8) protein_coding-intron (ENSMUSG00000059602.14, intron 4 of 13) 93883 ENSMUSG00000059602.14 ENSMUSG00000059602 ENSMUST00000139197 Syn3 protein_coding Interval_74897 chr17 57144829 57145247 + 0 NA TTS (ENSMUSG00000019489.7) protein_coding-TTS (ENSMUSG00000019489.7) 4739 ENSMUSG00000019489.7 ENSMUSG00000019489 ENSMUST00000019633 Cd70 protein_coding Interval_29512 chr11 84568277 84568550 + 0 NA Intergenic Intergenic 42753 ENSMUSG00000087211.7 ENSMUSG00000087211 ENSMUST00000128121 Lhx1os lincRNA Interval_84941 chr19 19324206 19324598 + 0 NA Intergenic Intergenic 47931 ENSMUSG00000118109.1 ENSMUSG00000118109 ENSMUST00000237424 Gm41815 lincRNA Interval_47753 chr13 92331761 92333218 + 0 NA intron (ENSMUSG00000014850.15, intron 9 of 24) protein_coding-intron (ENSMUSG00000014850.15, intron 8 of 23) -22237 ENSMUSG00000021707.5 ENSMUSG00000021707 ENSMUST00000022218 Dhfr protein_coding Interval_6951 chr1 121299279 121299496 + 0 NA TTS (ENSMUSG00000104332.1) TEC-TTS (ENSMUSG00000104332.1) 1444 ENSMUSG00000104332.1 ENSMUSG00000104332 ENSMUST00000193041 Gm38283 TEC Interval_154855 chr8 24412103 24413006 + 0 NA intron (ENSMUSG00000109141.1, intron 1 of 4) lincRNA-intron (ENSMUSG00000109141.1, intron 1 of 4) 375 ENSMUSG00000109141.1 ENSMUSG00000109141 ENSMUST00000208709 Gm30692 lincRNA Interval_149446 chr7 98649880 98650096 + 0 NA intron (ENSMUSG00000035401.9, intron 2 of 13) protein_coding-intron (ENSMUSG00000035401.9, intron 2 of 19) 30659 ENSMUSG00000109101.1 ENSMUSG00000109101 ENSMUST00000207234 Gm45132 TEC Interval_43723 chr13 35775136 35775452 + 0 NA intron (ENSMUSG00000114373.1, intron 1 of 1) protein_coding-intron (ENSMUSG00000059288.14, intron 3 of 9) 1602 ENSMUSG00000114373.1 ENSMUSG00000114373 ENSMUST00000224745 Gm48708 antisense Interval_103197 chr3 36571372 36572568 + 0 NA promoter-TSS (ENSMUSG00000027715.9) protein_coding-promoter-TSS (ENSMUSG00000027715.9) -419 ENSMUSG00000027715.9 ENSMUSG00000027715 ENSMUST00000145309 Ccna2 protein_coding Interval_172882 chrX 52762355 52762739 + 0 NA Intergenic Intergenic 10202 ENSMUSG00000083621.1 ENSMUSG00000083621 ENSMUST00000119571 Gm14586 processed_pseudogene Interval_4068 chr1 67180946 67181677 + 0 NA intron (ENSMUSG00000025991.8, intron 21 of 37) protein_coding-intron (ENSMUSG00000025991.8, intron 21 of 37) 58285 ENSMUSG00000025991.8 ENSMUSG00000025991 ENSMUST00000027144 Cps1 protein_coding Interval_21960 chr11 5431159 5431628 + 0 NA intron (ENSMUSG00000041961.14, intron 1 of 3) protein_coding-intron (ENSMUSG00000041961.14, intron 1 of 8) -49653 ENSMUSG00000041961.14 ENSMUSG00000041961 ENSMUST00000143746 Znrf3 protein_coding Interval_142419 chr6 141848889 141849466 + 0 NA intron (ENSMUSG00000030237.14, intron 2 of 5) protein_coding-intron (ENSMUSG00000030237.14, intron 2 of 5) 4505 ENSMUSG00000030237.14 ENSMUSG00000030237 ENSMUST00000204676 Slco1a4 protein_coding Interval_127076 chr5 100119371 100119650 + 0 NA intron (ENSMUSG00000050640.16, intron 1 of 5) protein_coding-intron (ENSMUSG00000050640.16, intron 1 of 7) 27613 ENSMUSG00000086259.7 ENSMUSG00000086259 ENSMUST00000154539 Tmem150cos antisense Interval_129486 chr5 120511030 120511591 + 0 NA promoter-TSS (ENSMUSG00000032754.14) protein_coding-promoter-TSS (ENSMUSG00000032754.14) 40 ENSMUSG00000032754.14 ENSMUSG00000032754 ENSMUST00000123326 Slc8b1 protein_coding Interval_86821 chr19 44106936 44108069 + 0 NA promoter-TSS (ENSMUSG00000025199.16) protein_coding-promoter-TSS (ENSMUSG00000025199.16) 6622 ENSMUSG00000077391.1 ENSMUSG00000077391 ENSMUST00000104203 Gm24336 snoRNA Interval_26974 chr11 61994827 61995139 + 0 NA intron (ENSMUSG00000042331.13, intron 1 of 3) protein_coding-intron (ENSMUSG00000042331.13, intron 1 of 2) -20633 ENSMUSG00000083212.3 ENSMUSG00000083212 ENSMUST00000120062 Gm12274 processed_pseudogene Interval_122796 chr5 25573000 25573635 + 0 NA Intergenic Intergenic -40886 ENSMUSG00000105744.1 ENSMUSG00000105744 ENSMUST00000199695 Gm43141 processed_pseudogene Interval_16607 chr10 65100213 65100503 + 0 NA Intergenic Intergenic 20009 ENSMUSG00000100528.1 ENSMUSG00000100528 ENSMUST00000187710 Gm28881 lincRNA Interval_100061 chr2 166856738 166857687 + 0 NA intron (ENSMUSG00000074582.10, intron 14 of 38) protein_coding-intron (ENSMUSG00000074582.10, intron 14 of 38) 29555 ENSMUSG00000074582.10 ENSMUSG00000074582 ENSMUST00000144847 Arfgef2 protein_coding Interval_156103 chr8 44686919 44687286 + 0 NA Intergenic Intergenic 85269 ENSMUSG00000088523.1 ENSMUSG00000088523 ENSMUST00000157898 Gm26089 rRNA Interval_106640 chr3 98013122 98014308 + 0 NA exon (ENSMUSG00000027878.11, exon 1 of 34) protein_coding-exon (ENSMUSG00000027878.11, exon 1 of 34) 188 ENSMUSG00000027878.11 ENSMUSG00000027878 ENSMUST00000079812 Notch2 protein_coding Interval_20679 chr10 120192454 120193441 + 0 NA intron (ENSMUSG00000020227.10, intron 1 of 11) protein_coding-intron (ENSMUSG00000020227.10, intron 1 of 11) -8711 ENSMUSG00000020225.10 ENSMUSG00000020225 ENSMUST00000123802 Tmbim4 protein_coding Interval_82251 chr18 69613692 69614644 + 0 NA intron (ENSMUSG00000053477.17, intron 1 of 12) protein_coding-intron (ENSMUSG00000053477.17, intron 9 of 20) 62205 ENSMUSG00000088659.1 ENSMUSG00000088659 ENSMUST00000158034 Gm24845 rRNA Interval_135234 chr6 37688819 37690014 + 0 NA Intergenic Intergenic -2221 ENSMUSG00000107035.1 ENSMUSG00000107035 ENSMUST00000201305 Ybx1-ps2 processed_pseudogene Interval_28386 chr11 75549481 75550257 + 0 NA intron (ENSMUSG00000038178.16, intron 5 of 13) protein_coding-intron (ENSMUSG00000038178.16, intron 5 of 13) -1560 ENSMUSG00000093100.1 ENSMUSG00000093100 ENSMUST00000175359 Mir3971 miRNA Interval_106623 chr3 97879196 97879417 + 0 NA intron (ENSMUSG00000038170.15, intron 1 of 45) protein_coding-intron (ENSMUSG00000038170.15, intron 1 of 46) 21783 ENSMUSG00000086557.1 ENSMUSG00000086557 ENSMUST00000127317 Gm15999 lincRNA Interval_88247 chr19 61110104 61110742 + 0 NA intron (ENSMUSG00000074733.14, intron 3 of 6) protein_coding-intron (ENSMUSG00000074733.14, intron 3 of 6) 30394 ENSMUSG00000074733.14 ENSMUSG00000074733 ENSMUST00000148569 Zfp950 protein_coding Interval_30680 chr11 95858284 95860039 + 0 NA promoter-TSS (ENSMUSG00000085578.1) lincRNA-promoter-TSS (ENSMUSG00000085578.1) 13 ENSMUSG00000085578.1 ENSMUSG00000085578 ENSMUST00000153795 Gm11527 lincRNA Interval_55316 chr14 82466705 82467100 + 0 NA Intergenic Intergenic -82373 ENSMUSG00000089266.1 ENSMUSG00000089266 ENSMUST00000158641 Gm22891 snRNA Interval_65378 chr16 22008914 22009994 + 0 NA promoter-TSS (ENSMUSG00000022855.9) protein_coding-promoter-TSS (ENSMUSG00000022855.9) -107 ENSMUSG00000022855.9 ENSMUSG00000022855 ENSMUST00000232263 Senp2 protein_coding Interval_173888 chrX 107297433 107298574 + 0 NA Intergenic Intergenic 13657 ENSMUSG00000073008.11 ENSMUSG00000073008 ENSMUST00000178838 Gpr174 protein_coding Interval_113660 chr4 57320700 57321523 + 0 NA Intergenic Intergenic -20736 ENSMUSG00000038764.14 ENSMUSG00000038764 ENSMUST00000151964 Ptpn3 protein_coding Interval_83739 chr19 4305563 4306793 + 0 NA promoter-TSS (ENSMUSG00000024858.14) protein_coding-promoter-TSS (ENSMUSG00000024858.14) -18329 ENSMUSG00000024858.14 ENSMUSG00000024858 ENSMUST00000167511 Grk2 protein_coding Interval_59080 chr15 43253184 43253631 + 0 NA intron (ENSMUSG00000022336.3, intron 9 of 11) protein_coding-intron (ENSMUSG00000022336.3, intron 10 of 12) 26375 ENSMUSG00000022336.3 ENSMUSG00000022336 ENSMUST00000226415 Eif3e protein_coding Interval_120475 chr4 148850360 148850885 + 0 NA intron (ENSMUSG00000028977.17, intron 2 of 20) protein_coding-intron (ENSMUSG00000028977.17, intron 2 of 15) 63702 ENSMUSG00000086766.1 ENSMUSG00000086766 ENSMUST00000151967 Gm15969 antisense Interval_2700 chr1 43553843 43554605 + 0 NA TTS (ENSMUSG00000066877.11) protein_coding-TTS (ENSMUSG00000066877.11) -6049 ENSMUSG00000103945.1 ENSMUSG00000103945 ENSMUST00000193169 Gm38228 TEC Interval_81989 chr18 66961592 66962126 + 0 NA Intergenic Intergenic -11836 ENSMUSG00000118216.1 ENSMUSG00000118216 ENSMUST00000235553 Gm19784 lincRNA Interval_142710 chr6 145091713 145092614 + 0 NA Intergenic Intergenic 35774 ENSMUSG00000086643.1 ENSMUSG00000086643 ENSMUST00000141440 Gm15687 antisense Interval_126149 chr5 79314556 79314919 + 0 NA Intergenic Intergenic -125460 ENSMUSG00000107308.1 ENSMUSG00000107308 ENSMUST00000200713 Gm43234 processed_pseudogene Interval_46550 chr13 67065475 67066185 + 0 NA intron (ENSMUSG00000114516.1, intron 1 of 1) antisense-intron (ENSMUSG00000114516.1, intron 1 of 1) -4660 ENSMUSG00000090641.2 ENSMUSG00000090641 ENSMUST00000167565 Zfp712 protein_coding Interval_29094 chr11 80286644 80287771 + 0 NA Intergenic Intergenic 32506 ENSMUSG00000017686.17 ENSMUSG00000017686 ENSMUST00000236882 Rhot1 protein_coding Interval_104251 chr3 62028284 62028487 + 0 NA Intergenic Intergenic 41409 ENSMUSG00000104489.1 ENSMUSG00000104489 ENSMUST00000193786 Gm9700 processed_pseudogene Interval_28103 chr11 72849616 72850179 + 0 NA intron (ENSMUSG00000055670.14, intron 12 of 54) protein_coding-intron (ENSMUSG00000055670.14, intron 12 of 54) 16436 ENSMUSG00000084329.1 ENSMUSG00000084329 ENSMUST00000118302 Gm6733 processed_pseudogene Interval_67045 chr16 42140388 42140621 + 0 NA intron (ENSMUSG00000061080.11, intron 6 of 8) protein_coding-intron (ENSMUSG00000061080.11, intron 4 of 5) 44413 ENSMUSG00000116841.1 ENSMUSG00000116841 ENSMUST00000232237 Gm49737 processed_pseudogene Interval_174250 chrX 141723747 141726195 + 0 NA exon (ENSMUSG00000054667.7, exon 1 of 2) protein_coding-exon (ENSMUSG00000054667.7, exon 1 of 2) 133 ENSMUSG00000086426.1 ENSMUSG00000086426 ENSMUST00000139874 Gm15295 antisense Interval_151436 chr7 122434615 122435332 + 0 NA intron (ENSMUSG00000052889.11, intron 2 of 2) protein_coding-intron (ENSMUSG00000052889.11, intron 3 of 16) -7050 ENSMUSG00000084230.1 ENSMUSG00000084230 ENSMUST00000118119 Gm14388 processed_pseudogene Interval_135790 chr6 47349635 47350918 + 0 NA Intergenic Intergenic 82813 ENSMUSG00000107853.1 ENSMUSG00000107853 ENSMUST00000203098 Gm18584 processed_pseudogene Interval_82050 chr18 67367997 67368231 + 0 NA TTS (ENSMUSG00000024526.9) protein_coding-TTS (ENSMUSG00000024526.9) -24011 ENSMUSG00000046415.11 ENSMUSG00000046415 ENSMUST00000138236 B430212C06Rik processed_transcript Interval_19047 chr10 94058386 94058636 + 0 NA intron (ENSMUSG00000020021.4, intron 2 of 20) protein_coding-intron (ENSMUSG00000020021.4, intron 2 of 20) -14031 ENSMUSG00000020021.4 ENSMUSG00000020021 ENSMUST00000125535 Fgd6 protein_coding Interval_118646 chr4 132968412 132969254 + 0 NA Intergenic Intergenic -8283 ENSMUSG00000028874.14 ENSMUSG00000028874 ENSMUST00000171223 Fgr protein_coding Interval_31893 chr11 103656561 103656933 + 0 NA Intergenic Intergenic 7177 ENSMUSG00000046215.3 ENSMUSG00000046215 ENSMUST00000057870 Rprml protein_coding Interval_11674 chr1 184530661 184530926 + 0 NA intron (ENSMUSG00000101574.1, intron 3 of 5) lincRNA-intron (ENSMUSG00000101574.1, intron 3 of 5) 26898 ENSMUSG00000101574.1 ENSMUSG00000101574 ENSMUST00000188766 1700112H15Rik lincRNA Interval_39249 chr12 86175144 86176277 + 0 NA intron (ENSMUSG00000097543.1, intron 4 of 4) lincRNA-intron (ENSMUSG00000097543.1, intron 4 of 4) 6369 ENSMUSG00000097543.1 ENSMUSG00000097543 ENSMUST00000181667 Gm805 lincRNA Interval_74621 chr17 53878121 53879507 + 0 NA Intergenic Intergenic -3264 ENSMUSG00000105732.1 ENSMUSG00000105732 ENSMUST00000200231 Sult1c2-ps1 unprocessed_pseudogene Interval_82783 chr18 77057341 77057811 + 0 NA Intergenic Intergenic -7669 ENSMUSG00000025423.16 ENSMUSG00000025423 ENSMUST00000168882 Pias2 protein_coding Interval_168052 chr9 75639229 75639446 + 0 NA Intergenic Intergenic 13578 ENSMUSG00000032184.5 ENSMUSG00000032184 ENSMUST00000213292 Lysmd2 protein_coding Interval_3944 chr1 64983542 64984398 + 0 NA Intergenic Intergenic 10634 ENSMUSG00000084416.3 ENSMUSG00000084416 ENSMUST00000120360 Rpl10a-ps1 processed_pseudogene Interval_125787 chr5 74159997 74160398 + 0 NA Intergenic Intergenic 15853 ENSMUSG00000106735.1 ENSMUSG00000106735 ENSMUST00000200757 A330058E17Rik TEC Interval_23771 chr11 26073797 26074521 + 0 NA intron (ENSMUSG00000032985.15, intron 1 of 5) protein_coding-intron (ENSMUSG00000032985.15, intron 1 of 6) -128081 ENSMUSG00000099015.1 ENSMUSG00000099015 ENSMUST00000185114 Mir6372 miRNA Interval_122970 chr5 28065513 28065803 + 0 NA intron (ENSMUSG00000097673.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000097673.1, intron 1 of 2) -9008 ENSMUSG00000045294.11 ENSMUSG00000045294 ENSMUST00000199728 Insig1 protein_coding Interval_47528 chr13 86395184 86395530 + 0 NA Intergenic Intergenic 159530 ENSMUSG00000098152.1 ENSMUSG00000098152 ENSMUST00000182392 Gm27025 processed_pseudogene Interval_32801 chr11 110786542 110786824 + 0 NA Intergenic Intergenic -181350 ENSMUSG00000051497.15 ENSMUSG00000051497 ENSMUST00000178798 Kcnj16 protein_coding Interval_38283 chr12 76894927 76896274 + 0 NA intron (ENSMUSG00000033373.16, intron 3 of 5) protein_coding-intron (ENSMUSG00000033373.16, intron 6 of 11) 8542 ENSMUSG00000033373.16 ENSMUSG00000033373 ENSMUST00000130605 Fntb protein_coding Interval_166618 chr9 61335920 61336136 + 0 NA Intergenic Intergenic 35599 ENSMUSG00000074256.3 ENSMUSG00000074256 ENSMUST00000187131 Gm10655 lincRNA Interval_67997 chr16 62864970 62865170 + 0 NA intron (ENSMUSG00000022912.8, intron 1 of 14) protein_coding-intron (ENSMUSG00000022912.8, intron 1 of 14) -18077 ENSMUSG00000022911.11 ENSMUSG00000022911 ENSMUST00000132902 Arl13b protein_coding Interval_111871 chr4 32158157 32159156 + 0 NA Intergenic Intergenic 8870 ENSMUSG00000083872.1 ENSMUSG00000083872 ENSMUST00000119323 Gm11928 processed_pseudogene Interval_132795 chr5 147925724 147926581 + 0 NA Intergenic Intergenic 31014 ENSMUSG00000085565.1 ENSMUSG00000085565 ENSMUST00000138406 Gm15721 lincRNA Interval_100048 chr2 166743176 166743845 + 0 NA Intergenic Intergenic -25235 ENSMUSG00000088063.1 ENSMUSG00000088063 ENSMUST00000157438 Gm24477 snRNA Interval_30103 chr11 89203671 89204112 + 0 NA Intergenic Intergenic -67125 ENSMUSG00000089485.1 ENSMUSG00000089485 ENSMUST00000158860 Gm24734 misc_RNA Interval_21696 chr11 3761492 3762615 + 0 NA intron (ENSMUSG00000020435.17, intron 2 of 2) protein_coding-intron (ENSMUSG00000020435.17, intron 2 of 13) 12679 ENSMUSG00000020435.17 ENSMUSG00000020435 ENSMUST00000135250 Osbp2 protein_coding Interval_20632 chr10 119769703 119770484 + 0 NA intron (ENSMUSG00000034813.18, intron 1 of 3) protein_coding-intron (ENSMUSG00000034813.18, intron 1 of 22) -8394 ENSMUSG00000084764.1 ENSMUSG00000084764 ENSMUST00000153898 Grip1os2 antisense Interval_76875 chr17 84675825 84676565 + 0 NA promoter-TSS (ENSMUSG00000024254.15) protein_coding-promoter-TSS (ENSMUSG00000024254.15) 231 ENSMUSG00000040505.13 ENSMUSG00000040505 ENSMUST00000172439 Abcg5 protein_coding Interval_17832 chr10 80310706 80312024 + 0 NA exon (ENSMUSG00000020135.13, exon 14 of 14) protein_coding-exon (ENSMUSG00000020135.13, exon 14 of 14) 9172 ENSMUSG00000020133.8 ENSMUSG00000020133 ENSMUST00000020341 2310011J03Rik protein_coding Interval_129466 chr5 120380909 120381787 + 0 NA Intergenic Intergenic -35380 ENSMUSG00000107141.1 ENSMUSG00000107141 ENSMUST00000200789 Gm42654 lincRNA Interval_73341 chr17 36292351 36292828 + 0 NA Intergenic Intergenic -6099 ENSMUSG00000023083.7 ENSMUSG00000023083 ENSMUST00000023845 H2-M10.2 protein_coding Interval_74209 chr17 47484091 47485096 + 0 NA intron (ENSMUSG00000023980.7, intron 7 of 7) protein_coding-intron (ENSMUSG00000023980.7, intron 7 of 7) 17679 ENSMUSG00000023980.7 ENSMUSG00000023980 ENSMUST00000233675 Taf8 protein_coding Interval_60510 chr15 74544345 74544735 + 0 NA intron (ENSMUSG00000034730.17, intron 12 of 30) protein_coding-intron (ENSMUSG00000034730.17, intron 12 of 30) -19281 ENSMUSG00000093340.1 ENSMUSG00000093340 ENSMUST00000175599 Gm26117 miRNA Interval_124022 chr5 37330144 37331243 + 0 NA intron (ENSMUSG00000029122.11, intron 2 of 7) protein_coding-intron (ENSMUSG00000029122.11, intron 2 of 20) -12321 ENSMUSG00000029122.11 ENSMUSG00000029122 ENSMUST00000133376 Evc protein_coding Interval_105978 chr3 90420700 90420940 + 0 NA intron (ENSMUSG00000027933.11, intron 3 of 8) protein_coding-intron (ENSMUSG00000027933.11, intron 3 of 29) -17606 ENSMUSG00000027933.11 ENSMUSG00000027933 ENSMUST00000198562 Ints3 protein_coding Interval_54736 chr14 74474931 74475166 + 0 NA Intergenic Intergenic 23489 ENSMUSG00000115427.1 ENSMUSG00000115427 ENSMUST00000226777 Gm49174 processed_pseudogene Interval_49144 chr13 108498432 108498651 + 0 NA promoter-TSS (ENSMUSG00000098836.1) misc_RNA-promoter-TSS (ENSMUSG00000098836.1) 97 ENSMUSG00000098836.1 ENSMUSG00000098836 ENSMUST00000183702 Gm27572 misc_RNA Interval_129036 chr5 117005362 117006270 + 0 NA Intergenic Intergenic -52996 ENSMUSG00000107327.1 ENSMUSG00000107327 ENSMUST00000201054 Gm7478 processed_pseudogene Interval_148729 chr7 84712477 84712813 + 0 NA intron (ENSMUSG00000085236.3, intron 1 of 4) antisense-intron (ENSMUSG00000085236.3, intron 1 of 4) -22762 ENSMUSG00000030629.15 ENSMUSG00000030629 ENSMUST00000207975 Zfand6 protein_coding Interval_106656 chr3 98180740 98181240 + 0 NA Intergenic Intergenic 10112 ENSMUSG00000106486.1 ENSMUSG00000106486 ENSMUST00000198267 Gm9771 processed_pseudogene Interval_12882 chr10 7195411 7196617 + 0 NA intron (ENSMUSG00000015202.13, intron 1 of 12) protein_coding-intron (ENSMUSG00000015202.13, intron 1 of 12) -60508 ENSMUSG00000015202.13 ENSMUSG00000015202 ENSMUST00000015346 Cnksr3 protein_coding Interval_77815 chr18 3951165 3951644 + 0 NA Intergenic Intergenic -58852 ENSMUSG00000117395.1 ENSMUSG00000117395 ENSMUST00000234528 Gm7378 processed_pseudogene Interval_47675 chr13 91123509 91124169 + 0 NA intron (ENSMUSG00000021619.6, intron 3 of 7) protein_coding-intron (ENSMUSG00000021619.6, intron 3 of 7) -96613 ENSMUSG00000091419.2 ENSMUSG00000091419 ENSMUST00000164671 Gm17450 pseudogene Interval_37324 chr12 65128013 65128433 + 0 NA intron (ENSMUSG00000055884.8, intron 22 of 22) protein_coding-intron (ENSMUSG00000055884.8, intron 22 of 22) -28217 ENSMUSG00000112992.1 ENSMUSG00000112992 ENSMUST00000223249 Gm47869 processed_pseudogene Interval_746 chr1 10488003 10488470 + 0 NA intron (ENSMUSG00000042501.12, intron 2 of 9) protein_coding-intron (ENSMUSG00000042501.12, intron 3 of 10) -36247 ENSMUSG00000103810.1 ENSMUSG00000103810 ENSMUST00000194845 Gm38005 TEC Interval_130930 chr5 134118448 134119492 + 0 NA intron (ENSMUSG00000015944.9, intron 1 of 8) protein_coding-intron (ENSMUSG00000015944.9, intron 1 of 8) 18965 ENSMUSG00000015944.9 ENSMUSG00000015944 ENSMUST00000140240 Castor2 protein_coding Interval_37598 chr12 70192366 70193164 + 0 NA intron (ENSMUSG00000021069.17, intron 19 of 19) protein_coding-intron (ENSMUSG00000021069.17, intron 19 of 19) 14583 ENSMUSG00000021069.17 ENSMUSG00000021069 ENSMUST00000166609 Pygl protein_coding Interval_52265 chr14 41153589 41153792 + 0 NA exon (ENSMUSG00000037780.3, exon 2 of 5) protein_coding-exon (ENSMUSG00000037780.3, exon 2 of 5) 2232 ENSMUSG00000037780.3 ENSMUSG00000037780 ENSMUST00000047095 Mbl1 protein_coding Interval_19835 chr10 110024777 110025666 + 0 NA intron (ENSMUSG00000020181.18, intron 3 of 40) protein_coding-intron (ENSMUSG00000020181.18, intron 3 of 4) 12558 ENSMUSG00000102410.1 ENSMUSG00000102410 ENSMUST00000192526 Gm36935 TEC Interval_145323 chr7 33543111 33543731 + 0 NA Intergenic Intergenic 16045 ENSMUSG00000095487.3 ENSMUSG00000095487 ENSMUST00000170232 Scgb1b21 transcribed_unprocessed_pseudogene Interval_155916 chr8 41017626 41017977 + 0 NA promoter-TSS (ENSMUSG00000084960.1) antisense-promoter-TSS (ENSMUSG00000084960.1) 63 ENSMUSG00000084960.1 ENSMUSG00000084960 ENSMUST00000152188 B430010I23Rik antisense Interval_79783 chr18 35094108 35094459 + 0 NA intron (ENSMUSG00000118380.1, intron 5 of 5) processed_transcript-intron (ENSMUSG00000118380.1, intron 5 of 5) -6660 ENSMUSG00000117727.1 ENSMUSG00000117727 ENSMUST00000238134 Gm3587 lincRNA Interval_160633 chr8 111204724 111205285 + 0 NA intron (ENSMUSG00000003316.14, intron 1 of 25) protein_coding-intron (ENSMUSG00000003316.14, intron 1 of 24) 10040 ENSMUSG00000076382.1 ENSMUSG00000076382 ENSMUST00000102427 Gm23193 miRNA Interval_32869 chr11 112588206 112588640 + 0 NA Intergenic Intergenic 122917 ENSMUSG00000041674.16 ENSMUSG00000041674 ENSMUST00000148724 BC006965 processed_transcript Interval_46076 chr13 60963978 60964450 + 0 NA Intergenic Intergenic -1283 ENSMUSG00000114663.1 ENSMUSG00000114663 ENSMUST00000225914 Gm40976 processed_pseudogene Interval_12638 chr10 4072354 4073357 + 0 NA intron (ENSMUSG00000040675.17, intron 20 of 27) protein_coding-intron (ENSMUSG00000040675.17, intron 20 of 27) -31458 ENSMUSG00000065792.1 ENSMUSG00000065792 ENSMUST00000083858 Gm25515 snRNA Interval_3112 chr1 53569116 53569821 + 0 NA intron (ENSMUSG00000096141.2, intron 23 of 65) protein_coding-intron (ENSMUSG00000096141.2, intron 23 of 65) -126073 ENSMUSG00000092657.1 ENSMUSG00000092657 ENSMUST00000174916 Gm25240 miRNA Interval_40932 chr12 109995817 109996057 + 0 NA intron (ENSMUSG00000113063.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000113063.1, intron 1 of 2) 27936 ENSMUSG00000113063.1 ENSMUSG00000113063 ENSMUST00000222974 Gm34667 lincRNA Interval_165135 chr9 44744250 44744596 + 0 NA intron (ENSMUSG00000032096.16, intron 9 of 9) protein_coding-intron (ENSMUSG00000032096.16, intron 9 of 9) -7476 ENSMUSG00000064658.1 ENSMUSG00000064658 ENSMUST00000082724 Gm24166 snoRNA Interval_3755 chr1 62820330 62821107 + 0 NA TTS (ENSMUSG00000100426.1) lincRNA-TTS (ENSMUSG00000100426.1) 11416 ENSMUSG00000103032.1 ENSMUSG00000103032 ENSMUST00000192219 Gm37121 TEC Interval_26787 chr11 60486503 60487295 + 0 NA intron (ENSMUSG00000042678.17, intron 8 of 64) protein_coding-intron (ENSMUSG00000042678.17, intron 8 of 65) 6554 ENSMUSG00000042678.17 ENSMUSG00000042678 ENSMUST00000122825 Myo15 protein_coding Interval_83958 chr19 5808765 5810800 + 0 NA Intergenic Intergenic 7841 ENSMUSG00000102349.1 ENSMUSG00000102349 ENSMUST00000192176 Gm37376 TEC Interval_31159 chr11 98532450 98532941 + 0 NA intron (ENSMUSG00000018168.8, intron 1 of 2) protein_coding-intron (ENSMUSG00000018168.8, intron 1 of 7) -22748 ENSMUSG00000017195.15 ENSMUSG00000017195 ENSMUST00000126236 Zpbp2 protein_coding Interval_121176 chr4 153805915 153806747 + 0 NA Intergenic Intergenic -70053 ENSMUSG00000077519.1 ENSMUSG00000077519 ENSMUST00000104331 Gm25880 snoRNA Interval_6375 chr1 106542299 106542986 + 0 NA exon (ENSMUSG00000057329.7, exon 2 of 2) protein_coding-exon (ENSMUSG00000057329.7, exon 2 of 2) 699 ENSMUSG00000054006.14 ENSMUSG00000054006 ENSMUST00000149909 D630008O14Rik antisense Interval_21295 chr10 127706793 127707087 + 0 NA intron (ENSMUSG00000025401.9, intron 4 of 26) protein_coding-intron (ENSMUSG00000025401.9, intron 4 of 26) -12388 ENSMUSG00000025401.9 ENSMUSG00000025401 ENSMUST00000219882 Myo1a protein_coding Interval_172180 chrX 8235153 8235478 + 0 NA Intergenic Intergenic 11041 ENSMUSG00000031171.11 ENSMUSG00000031171 ENSMUST00000147467 Ftsj1 protein_coding Interval_90111 chr2 28156579 28156851 + 0 NA Intergenic Intergenic -36277 ENSMUSG00000026833.18 ENSMUSG00000026833 ENSMUST00000028177 Olfm1 protein_coding Interval_42361 chr13 12359076 12360051 + 0 NA Intergenic Intergenic -18595 ENSMUSG00000094185.2 ENSMUSG00000094185 ENSMUST00000180224 Gm5445 processed_pseudogene Interval_5022 chr1 84324327 84325232 + 0 NA intron (ENSMUSG00000045658.16, intron 2 of 4) protein_coding-intron (ENSMUSG00000045658.16, intron 1 of 2) -40156 ENSMUSG00000045658.16 ENSMUSG00000045658 ENSMUST00000187992 Pid1 protein_coding Interval_101282 chr2 180170838 180172064 + 0 NA promoter-TSS (ENSMUSG00000039041.15) protein_coding-promoter-TSS (ENSMUSG00000039041.15) -144 ENSMUSG00000039041.15 ENSMUSG00000039041 ENSMUST00000152850 Adrm1 protein_coding Interval_95440 chr2 109341063 109341263 + 0 NA exon (ENSMUSG00000027115.14, exon 17 of 17) protein_coding-exon (ENSMUSG00000027115.14, exon 17 of 17) 49140 ENSMUSG00000027115.14 ENSMUSG00000027115 ENSMUST00000162515 Kif18a protein_coding Interval_158589 chr8 84652859 84653663 + 0 NA Intergenic Intergenic 9593 ENSMUSG00000053560.5 ENSMUSG00000053560 ENSMUST00000060427 Ier2 protein_coding Interval_29618 chr11 85482604 85483404 + 0 NA intron (ENSMUSG00000059439.15, intron 4 of 14) protein_coding-intron (ENSMUSG00000059439.15, intron 13 of 24) -10755 ENSMUSG00000087779.1 ENSMUSG00000087779 ENSMUST00000157154 Gm23765 snRNA Interval_137054 chr6 66995079 66995902 + 0 NA intron (ENSMUSG00000107634.1, intron 1 of 1) protein_coding-intron (ENSMUSG00000036402.13, intron 3 of 4) 12923 ENSMUSG00000107634.1 ENSMUSG00000107634 ENSMUST00000204824 Gm36816 antisense Interval_117528 chr4 124381067 124381366 + 0 NA Intergenic Intergenic -45535 ENSMUSG00000088933.1 ENSMUSG00000088933 ENSMUST00000158308 Gm22983 snRNA Interval_23296 chr11 21238409 21239879 + 0 NA promoter-TSS (ENSMUSG00000020128.15) protein_coding-promoter-TSS (ENSMUSG00000020128.15) 10416 ENSMUSG00000089155.1 ENSMUSG00000089155 ENSMUST00000158530 Gm23582 snoRNA Interval_106174 chr3 94341734 94342351 + 0 NA promoter-TSS (ENSMUSG00000028148.11) protein_coding-promoter-TSS (ENSMUSG00000028148.11) -217 ENSMUSG00000028148.11 ENSMUSG00000028148 ENSMUST00000198083 Them5 protein_coding Interval_134986 chr6 34343551 34345632 + 0 NA Intergenic Intergenic -11524 ENSMUSG00000029762.6 ENSMUSG00000029762 ENSMUST00000133370 Akr1b8 protein_coding Interval_73729 chr17 43028294 43029307 + 0 NA intron (ENSMUSG00000023915.5, intron 1 of 1) protein_coding-intron (ENSMUSG00000023915.5, intron 1 of 5) 12232 ENSMUSG00000023915.5 ENSMUSG00000023915 ENSMUST00000233482 Tnfrsf21 protein_coding Interval_90739 chr2 32213361 32213571 + 0 NA exon (ENSMUSG00000039262.16, exon 16 of 32) protein_coding-exon (ENSMUSG00000039262.16, exon 16 of 32) 1268 ENSMUSG00000039262.16 ENSMUSG00000039262 ENSMUST00000141053 Prrc2b protein_coding Interval_91602 chr2 44508915 44509144 + 0 NA Intergenic Intergenic 80094 ENSMUSG00000088124.1 ENSMUSG00000088124 ENSMUST00000157499 Gm22867 snRNA Interval_28303 chr11 75049701 75050182 + 0 NA intron (ENSMUSG00000038290.15, intron 3 of 4) protein_coding-intron (ENSMUSG00000038290.15, intron 12 of 18) -10593 ENSMUSG00000085765.1 ENSMUSG00000085765 ENSMUST00000155508 Gm12333 antisense Interval_86134 chr19 36943395 36945104 + 0 NA intron (ENSMUSG00000040565.8, intron 1 of 37) protein_coding-intron (ENSMUSG00000040565.8, intron 1 of 37) -15936 ENSMUSG00000040565.8 ENSMUSG00000040565 ENSMUST00000236343 Btaf1 protein_coding Interval_128329 chr5 112573597 112574184 + 0 NA intron (ENSMUSG00000058153.15, intron 1 of 14) protein_coding-intron (ENSMUSG00000058153.15, intron 1 of 16) 2978 ENSMUSG00000058153.15 ENSMUSG00000058153 ENSMUST00000212758 Sez6l protein_coding Interval_142489 chr6 142814181 142814945 + 0 NA exon (ENSMUSG00000072683.3, exon 1 of 2) processed_transcript-exon (ENSMUSG00000072683.3, exon 1 of 2) 178 ENSMUSG00000072683.3 ENSMUSG00000072683 ENSMUST00000159599 Gm7457 processed_transcript Interval_59279 chr15 50698231 50698701 + 0 NA intron (ENSMUSG00000038679.16, intron 7 of 8) protein_coding-intron (ENSMUSG00000038679.16, intron 5 of 6) 190648 ENSMUSG00000084458.1 ENSMUSG00000084458 ENSMUST00000122509 Mir1907 miRNA Interval_75237 chr17 65074933 65075336 + 0 NA Intergenic Intergenic 94069 ENSMUSG00000117336.1 ENSMUSG00000117336 ENSMUST00000233948 Gm49865 processed_pseudogene Interval_108078 chr3 121396398 121396732 + 0 NA Intergenic Intergenic -15886 ENSMUSG00000106455.1 ENSMUSG00000106455 ENSMUST00000197896 Gm5711 processed_pseudogene Interval_75213 chr17 64761868 64763718 + 0 NA Intergenic Intergenic -4318 ENSMUSG00000117105.1 ENSMUSG00000117105 ENSMUST00000233348 Dreh lincRNA Interval_129804 chr5 122444218 122446136 + 0 NA TTS (ENSMUSG00000029466.11) protein_coding-TTS (ENSMUSG00000029466.11) 5038 ENSMUSG00000029466.11 ENSMUSG00000029466 ENSMUST00000154074 Anapc7 protein_coding Interval_81247 chr18 56734904 56735670 + 0 NA intron (ENSMUSG00000024590.8, intron 5 of 10) protein_coding-intron (ENSMUSG00000024590.8, intron 5 of 10) 6846 ENSMUSG00000024590.8 ENSMUSG00000024590 ENSMUST00000128651 Lmnb1 protein_coding Interval_98902 chr2 155911812 155912845 + 0 NA intron (ENSMUSG00000005882.18, intron 2 of 6) protein_coding-intron (ENSMUSG00000005882.18, intron 2 of 6) 17948 ENSMUSG00000005882.18 ENSMUSG00000005882 ENSMUST00000142655 Uqcc1 protein_coding Interval_39239 chr12 86132940 86133186 + 0 NA intron (ENSMUSG00000007867.9, intron 3 of 7) protein_coding-intron (ENSMUSG00000007867.9, intron 3 of 7) -36278 ENSMUSG00000097543.1 ENSMUSG00000097543 ENSMUST00000181667 Gm805 lincRNA Interval_106555 chr3 97191415 97191614 + 0 NA Intergenic Intergenic 32418 ENSMUSG00000028093.15 ENSMUSG00000028093 ENSMUST00000198329 Acp6 protein_coding Interval_3711 chr1 61528144 61530273 + 0 NA Intergenic Intergenic -16674 ENSMUSG00000102168.1 ENSMUSG00000102168 ENSMUST00000194422 Gm36943 TEC Interval_157051 chr8 64791391 64792155 + 0 NA intron (ENSMUSG00000031605.8, intron 4 of 13) protein_coding-intron (ENSMUSG00000031605.8, intron 4 of 14) 17365 ENSMUSG00000109879.1 ENSMUSG00000109879 ENSMUST00000210294 Gm10997 TEC Interval_132768 chr5 147751536 147753397 + 0 NA Intergenic Intergenic 6950 ENSMUSG00000106845.1 ENSMUSG00000106845 ENSMUST00000202338 Gm43156 lincRNA Interval_29842 chr11 87201405 87201651 + 0 NA exon (ENSMUSG00000018548.15, exon 19 of 24) protein_coding-exon (ENSMUSG00000018548.15, exon 19 of 24) 11454 ENSMUSG00000018548.15 ENSMUSG00000018548 ENSMUST00000154138 Trim37 protein_coding Interval_115677 chr4 101961332 101962028 + 0 NA Intergenic Intergenic 19369 ENSMUSG00000078626.2 ENSMUSG00000078626 ENSMUST00000106916 Gm12790 protein_coding Interval_66750 chr16 37010603 37012428 + 0 NA promoter-TSS (ENSMUSG00000034206.15) protein_coding-promoter-TSS (ENSMUSG00000034206.15) -271 ENSMUSG00000034206.15 ENSMUSG00000034206 ENSMUST00000182717 Polq protein_coding Interval_86248 chr19 38062852 38065111 + 0 NA intron (ENSMUSG00000024989.15, intron 5 of 9) protein_coding-intron (ENSMUSG00000024989.15, intron 4 of 8) -7948 ENSMUSG00000064646.1 ENSMUSG00000064646 ENSMUST00000082712 Gm23300 snoRNA Interval_53875 chr14 63046965 63047423 + 0 NA promoter-TSS (ENSMUSG00000054763.9) protein_coding-promoter-TSS (ENSMUSG00000054763.9) -1035 ENSMUSG00000054763.9 ENSMUSG00000054763 ENSMUST00000138708 Defb42 protein_coding Interval_130551 chr5 128745229 128746148 + 0 NA exon (ENSMUSG00000029423.10, exon 12 of 22) protein_coding-exon (ENSMUSG00000029423.10, exon 12 of 22) -9659 ENSMUSG00000105483.1 ENSMUSG00000105483 ENSMUST00000196722 4930553I04Rik TEC Interval_99331 chr2 159096320 159097194 + 0 NA Intergenic Intergenic 26894 ENSMUSG00000104628.1 ENSMUSG00000104628 ENSMUST00000196974 Gm44319 miRNA Interval_74411 chr17 50013358 50013581 + 0 NA intron (ENSMUSG00000039316.14, intron 5 of 7) protein_coding-intron (ENSMUSG00000039316.14, intron 7 of 9) 40642 ENSMUSG00000118535.1 ENSMUSG00000118535 ENSMUST00000239097 AC133946.1 unitary_pseudogene Interval_104103 chr3 58600461 58600647 + 0 NA Intergenic Intergenic 23856 ENSMUSG00000075700.9 ENSMUSG00000075700 ENSMUST00000125815 Selenot protein_coding Interval_50939 chr14 20891563 20893005 + 0 NA Intergenic Intergenic -35863 ENSMUSG00000114728.1 ENSMUSG00000114728 ENSMUST00000225216 Gm6128 processed_pseudogene Interval_111866 chr4 32106655 32107040 + 0 NA Intergenic Intergenic -42939 ENSMUSG00000083872.1 ENSMUSG00000083872 ENSMUST00000119323 Gm11928 processed_pseudogene Interval_31124 chr11 98297564 98299266 + 0 NA Intergenic Intergenic 13033 ENSMUSG00000093673.1 ENSMUSG00000093673 ENSMUST00000176721 Gm20644 sense_overlapping Interval_27199 chr11 64027134 64028204 + 0 NA intron (ENSMUSG00000042148.8, intron 4 of 6) protein_coding-intron (ENSMUSG00000042148.8, intron 4 of 6) 15054 ENSMUSG00000084884.1 ENSMUSG00000084884 ENSMUST00000130860 Gm12289 antisense Interval_136199 chr6 51998377 51998848 + 0 NA intron (ENSMUSG00000059182.7, intron 3 of 12) protein_coding-intron (ENSMUSG00000059182.7, intron 3 of 12) -13989 ENSMUSG00000108244.1 ENSMUSG00000108244 ENSMUST00000203453 Gm44077 lincRNA Interval_173385 chrX 86187095 86187913 + 0 NA Intergenic Intergenic -4260 ENSMUSG00000025056.4 ENSMUSG00000025056 ENSMUST00000026036 Nr0b1 protein_coding Interval_148841 chr7 89230030 89230338 + 0 NA intron (ENSMUSG00000039428.11, intron 3 of 5) protein_coding-intron (ENSMUSG00000039428.11, intron 5 of 14) -13087 ENSMUSG00000109576.1 ENSMUSG00000109576 ENSMUST00000208963 Gm44704 TEC Interval_23494 chr11 22945272 22945480 + 0 NA intron (ENSMUSG00000051355.18, intron 1 of 1) protein_coding-intron (ENSMUSG00000051355.18, intron 3 of 3) 27483 ENSMUSG00000051355.18 ENSMUSG00000051355 ENSMUST00000093270 Commd1 protein_coding Interval_37703 chr12 71258568 71258834 + 0 NA Intergenic Intergenic 11656 ENSMUSG00000113572.1 ENSMUSG00000113572 ENSMUST00000221823 Gm7959 processed_pseudogene Interval_146990 chr7 57358102 57358429 + 0 NA intron (ENSMUSG00000055026.13, intron 2 of 2) protein_coding-intron (ENSMUSG00000055026.13, intron 2 of 3) 28923 ENSMUSG00000055026.13 ENSMUSG00000055026 ENSMUST00000171965 Gabrg3 protein_coding Interval_29240 chr11 81996258 81996733 + 0 NA intron (ENSMUSG00000109297.1, intron 1 of 5) lincRNA-intron (ENSMUSG00000109297.1, intron 1 of 5) 11089 ENSMUSG00000084996.1 ENSMUSG00000084996 ENSMUST00000150772 Gm11419 lincRNA Interval_9414 chr1 156931274 156931942 + 0 NA intron (ENSMUSG00000026594.14, intron 1 of 19) protein_coding-intron (ENSMUSG00000026594.14, intron 1 of 18) 7991 ENSMUSG00000026594.14 ENSMUSG00000026594 ENSMUST00000189648 Ralgps2 protein_coding Interval_97703 chr2 142946423 142946911 + 0 NA Intergenic Intergenic 43702 ENSMUSG00000086504.1 ENSMUSG00000086504 ENSMUST00000124774 Kif16bos antisense Interval_158739 chr8 85667820 85668342 + 0 NA intron (ENSMUSG00000036902.11, intron 4 of 8) protein_coding-intron (ENSMUSG00000036902.11, intron 4 of 8) -32824 ENSMUSG00000098388.1 ENSMUSG00000098388 ENSMUST00000184375 Mir8109 miRNA Interval_75829 chr17 71672994 71673433 + 0 NA promoter-TSS (ENSMUSG00000045761.16) protein_coding-promoter-TSS (ENSMUSG00000045761.16) -11592 ENSMUSG00000045761.16 ENSMUSG00000045761 ENSMUST00000129072 Togaram2 protein_coding Interval_172799 chrX 49567096 49567363 + 0 NA Intergenic Intergenic 6603 ENSMUSG00000083455.1 ENSMUSG00000083455 ENSMUST00000120358 Gm15037 processed_pseudogene Interval_19434 chr10 99209226 99210047 + 0 NA Intergenic Intergenic 19270 ENSMUSG00000112805.1 ENSMUSG00000112805 ENSMUST00000219433 Gm34574 lincRNA Interval_13629 chr10 20285794 20287126 + 0 NA intron (ENSMUSG00000111447.1, intron 1 of 4) antisense-intron (ENSMUSG00000111447.1, intron 1 of 4) 171 ENSMUSG00000111447.1 ENSMUSG00000111447 ENSMUST00000215889 Gm48249 antisense Interval_153683 chr8 4585741 4587245 + 0 NA Intergenic Intergenic -26674 ENSMUSG00000058748.9 ENSMUSG00000058748 ENSMUST00000073201 Zfp958 protein_coding Interval_68998 chr16 90019930 90020153 + 0 NA intron (ENSMUSG00000002489.16, intron 2 of 11) protein_coding-intron (ENSMUSG00000002489.16, intron 2 of 11) -69942 ENSMUSG00000116536.1 ENSMUSG00000116536 ENSMUST00000232386 Gm2805 processed_pseudogene Interval_140221 chr6 115650645 115651453 + 0 NA intron (ENSMUSG00000000441.17, intron 1 of 6) protein_coding-intron (ENSMUSG00000000441.17, intron 1 of 16) -11990 ENSMUSG00000081805.1 ENSMUSG00000081805 ENSMUST00000119165 Gm14335 processed_pseudogene Interval_88757 chr2 10334099 10335523 + 0 NA Intergenic Intergenic -37637 ENSMUSG00000061186.15 ENSMUSG00000061186 ENSMUST00000041105 Sfmbt2 protein_coding Interval_22336 chr11 8902767 8903649 + 0 NA intron (ENSMUSG00000046634.12, intron 12 of 42) protein_coding-intron (ENSMUSG00000046634.12, intron 19 of 49) -17912 ENSMUSG00000082095.1 ENSMUSG00000082095 ENSMUST00000119652 Gm11991 processed_pseudogene Interval_78802 chr18 20713186 20713628 + 0 NA intron (ENSMUSG00000056124.5, intron 3 of 8) protein_coding-intron (ENSMUSG00000056124.5, intron 3 of 8) -30444 ENSMUSG00000091449.3 ENSMUSG00000091449 ENSMUST00000165229 Gm10269 processed_pseudogene Interval_137520 chr6 72864320 72864536 + 0 NA intron (ENSMUSG00000055239.10, intron 1 of 3) protein_coding-intron (ENSMUSG00000055239.10, intron 1 of 6) 31491 ENSMUSG00000107610.1 ENSMUSG00000107610 ENSMUST00000205107 D530018E20Rik TEC Interval_79525 chr18 32836759 32838063 + 0 NA promoter-TSS (ENSMUSG00000038299.16) protein_coding-promoter-TSS (ENSMUSG00000038299.16) -15696 ENSMUSG00000038299.16 ENSMUSG00000038299 ENSMUST00000234798 Wdr36 protein_coding Interval_10294 chr1 168210463 168210833 + 0 NA intron (ENSMUSG00000052534.15, intron 2 of 7) protein_coding-intron (ENSMUSG00000052534.15, intron 2 of 6) 127023 ENSMUSG00000103780.1 ENSMUSG00000103780 ENSMUST00000192272 Gm37524 TEC Interval_24067 chr11 29913228 29913942 + 0 NA intron (ENSMUSG00000044072.14, intron 2 of 41) protein_coding-intron (ENSMUSG00000044072.14, intron 2 of 41) 64124 ENSMUSG00000088135.1 ENSMUSG00000088135 ENSMUST00000157510 Gm22588 snoRNA Interval_174336 chrX 145045017 145045267 + 0 NA intron (ENSMUSG00000071679.4, intron 2 of 6) protein_coding-intron (ENSMUSG00000071679.4, intron 2 of 6) 5798 ENSMUSG00000092917.1 ENSMUSG00000092917 ENSMUST00000175176 Mir3472 miRNA Interval_158416 chr8 83600638 83600943 + 0 NA TTS (ENSMUSG00000110690.1) processed_pseudogene-TTS (ENSMUSG00000110690.1) 777 ENSMUSG00000110690.1 ENSMUSG00000110690 ENSMUST00000212023 Gm18001 processed_pseudogene Interval_33590 chr11 117389654 117390526 + 0 NA Intergenic Intergenic -24299 ENSMUSG00000086588.1 ENSMUSG00000086588 ENSMUST00000124901 Gm11729 lincRNA Interval_29945 chr11 87966010 87969114 + 0 NA Intergenic Intergenic 16450 ENSMUSG00000020483.14 ENSMUSG00000020483 ENSMUST00000146941 Dynll2 protein_coding Interval_112965 chr4 46499150 46499974 + 0 NA TTS (ENSMUSG00000028334.10) protein_coding-TTS (ENSMUSG00000028334.10) 4407 ENSMUSG00000064410.1 ENSMUSG00000064410 ENSMUST00000082476 Gm22247 snoRNA Interval_144675 chr7 27459286 27460728 + 0 NA TTS (ENSMUSG00000040466.16) protein_coding-TTS (ENSMUSG00000040466.16) 10528 ENSMUSG00000082016.3 ENSMUSG00000082016 ENSMUST00000117129 Pgam1-ps2 processed_pseudogene Interval_155557 chr8 34460057 34461425 + 0 NA intron (ENSMUSG00000110369.1, intron 3 of 6) lincRNA-intron (ENSMUSG00000110369.1, intron 3 of 6) 12254 ENSMUSG00000110369.1 ENSMUSG00000110369 ENSMUST00000210285 Gm45349 lincRNA Interval_140459 chr6 118379257 118380367 + 0 NA Intergenic Intergenic 39592 ENSMUSG00000030138.8 ENSMUSG00000030138 ENSMUST00000203444 Bms1 protein_coding Interval_159178 chr8 91404260 91404489 + 0 NA intron (ENSMUSG00000055932.15, intron 3 of 4) protein_coding-intron (ENSMUSG00000055932.15, intron 2 of 8) -12429 ENSMUSG00000110233.1 ENSMUSG00000110233 ENSMUST00000209572 Gm45427 TEC Interval_88971 chr2 13776542 13777212 + 0 NA intron (ENSMUSG00000003418.11, intron 2 of 7) protein_coding-intron (ENSMUSG00000003418.11, intron 2 of 7) 16416 ENSMUSG00000003418.11 ENSMUSG00000003418 ENSMUST00000150781 St8sia6 protein_coding Interval_114430 chr4 76163528 76163850 + 0 NA intron (ENSMUSG00000028399.18, intron 3 of 30) protein_coding-intron (ENSMUSG00000028399.18, intron 4 of 29) -79232 ENSMUSG00000028399.18 ENSMUSG00000028399 ENSMUST00000134604 Ptprd protein_coding Interval_145709 chr7 37576263 37576787 + 0 NA intron (ENSMUSG00000043456.17, intron 3 of 3) protein_coding-intron (ENSMUSG00000043456.17, intron 3 of 5) -8135 ENSMUSG00000043456.17 ENSMUSG00000043456 ENSMUST00000206332 Zfp536 protein_coding Interval_40340 chr12 103995019 103996170 + 0 NA exon (ENSMUSG00000058260.2, exon 5 of 5) protein_coding-exon (ENSMUSG00000058260.2, exon 5 of 5) 985 ENSMUSG00000093753.1 ENSMUSG00000093753 ENSMUST00000176106 Gm28577 processed_transcript Interval_168191 chr9 77860748 77860984 + 0 NA Intergenic Intergenic 9158 ENSMUSG00000111580.1 ENSMUSG00000111580 ENSMUST00000214326 Gm19572 processed_pseudogene Interval_55917 chr14 102219847 102220034 + 0 NA Intergenic Intergenic 109721 ENSMUSG00000095037.1 ENSMUSG00000095037 ENSMUST00000180276 Gm22347 snoRNA Interval_6389 chr1 106758772 106760421 + 0 NA promoter-TSS (ENSMUSG00000009905.5) protein_coding-promoter-TSS (ENSMUSG00000009905.5) 87 ENSMUSG00000009905.5 ENSMUSG00000009905 ENSMUST00000187617 Kdsr protein_coding Interval_52656 chr14 48322868 48323689 + 0 NA Intergenic Intergenic 39337 ENSMUSG00000114991.1 ENSMUSG00000114991 ENSMUST00000228144 1700128I11Rik lincRNA Interval_66851 chr16 38127184 38127516 + 0 NA intron (ENSMUSG00000022812.14, intron 1 of 11) protein_coding-intron (ENSMUSG00000022812.14, intron 1 of 10) -30658 ENSMUSG00000095395.2 ENSMUSG00000095395 ENSMUST00000179548 Gm25617 snoRNA Interval_45119 chr13 52492139 52492430 + 0 NA Intergenic Intergenic 38995 ENSMUSG00000047842.7 ENSMUSG00000047842 ENSMUST00000057442 Diras2 protein_coding Interval_93394 chr2 72740613 72741696 + 0 NA Intergenic Intergenic 37644 ENSMUSG00000085252.1 ENSMUSG00000085252 ENSMUST00000124829 8430437L04Rik lincRNA Interval_59662 chr15 57705493 57706608 + 0 NA intron (ENSMUSG00000071757.10, intron 1 of 2) protein_coding-intron (ENSMUSG00000071757.10, intron 1 of 3) 2877 ENSMUSG00000090002.1 ENSMUSG00000090002 ENSMUST00000160938 Gm16006 antisense Interval_104669 chr3 69263517 69263894 + 0 NA Intergenic Intergenic 41286 ENSMUSG00000098207.1 ENSMUSG00000098207 ENSMUST00000183126 Arl14 protein_coding Interval_66336 chr16 33223207 33223495 + 0 NA intron (ENSMUSG00000022807.9, intron 7 of 12) protein_coding-intron (ENSMUSG00000022807.9, intron 7 of 12) -28091 ENSMUSG00000022808.5 ENSMUSG00000022808 ENSMUST00000231242 Snx4 protein_coding Interval_61504 chr15 82035234 82036672 + 0 NA intron (ENSMUSG00000022471.14, intron 5 of 6) protein_coding-intron (ENSMUSG00000022471.14, intron 11 of 12) 7821 ENSMUSG00000022471.14 ENSMUSG00000022471 ENSMUST00000164775 Xrcc6 protein_coding Interval_9257 chr1 155564841 155565149 + 0 NA intron (ENSMUSG00000033701.13, intron 2 of 7) protein_coding-intron (ENSMUSG00000033701.13, intron 2 of 7) 1878 ENSMUSG00000033701.13 ENSMUSG00000033701 ENSMUST00000192730 Acbd6 protein_coding Interval_105672 chr3 88492424 88493763 + 0 NA intron (ENSMUSG00000028063.15, intron 1 of 9) protein_coding-intron (ENSMUSG00000028063.15, intron 1 of 11) -10229 ENSMUSG00000028063.15 ENSMUSG00000028063 ENSMUST00000149068 Lmna protein_coding Interval_3541 chr1 59456443 59457497 + 0 NA Intergenic Intergenic -7468 ENSMUSG00000104502.1 ENSMUSG00000104502 ENSMUST00000195013 Gm37737 TEC Interval_13087 chr10 11262305 11262790 + 0 NA intron (ENSMUSG00000097007.3, intron 5 of 5) bidirectional_promoter_lncRNA-intron (ENSMUSG00000097007.3, intron 1 of 1) 18674 ENSMUSG00000097007.3 ENSMUSG00000097007 ENSMUST00000181688 4930432B10Rik bidirectional_promoter_lncRNA Interval_29067 chr11 80141684 80143129 + 0 NA promoter-TSS (ENSMUSG00000046909.9) protein_coding-promoter-TSS (ENSMUSG00000046909.9) -2497 ENSMUSG00000046909.9 ENSMUSG00000046909 ENSMUST00000131601 Tefm protein_coding Interval_71518 chr17 24262720 24262951 + 0 NA Intergenic Intergenic -11488 ENSMUSG00000072082.7 ENSMUSG00000072082 ENSMUST00000234096 Ccnf protein_coding Interval_59187 chr15 47196098 47197437 + 0 NA Intergenic Intergenic -225148 ENSMUSG00000115534.1 ENSMUSG00000115534 ENSMUST00000227510 Gm7508 processed_pseudogene Interval_79261 chr18 28458852 28459413 + 0 NA Intergenic Intergenic 26243 ENSMUSG00000117449.1 ENSMUSG00000117449 ENSMUST00000234566 Gm6643 processed_pseudogene Interval_25102 chr11 43958149 43958877 + 0 NA promoter-TSS (ENSMUSG00000087172.1) lincRNA-promoter-TSS (ENSMUSG00000087172.1) -576 ENSMUSG00000087172.1 ENSMUSG00000087172 ENSMUST00000148504 Gm12153 lincRNA Interval_11177 chr1 179859116 179859718 + 0 NA Intergenic Intergenic 56041 ENSMUSG00000073486.2 ENSMUSG00000073486 ENSMUST00000097454 Gm10518 antisense Interval_155238 chr8 28543968 28544930 + 0 NA Intergenic Intergenic -14732 ENSMUSG00000109794.1 ENSMUSG00000109794 ENSMUST00000209671 Gm45571 lincRNA Interval_166029 chr9 55586062 55586268 + 0 NA intron (ENSMUSG00000034007.10, intron 29 of 32) protein_coding-intron (ENSMUSG00000034007.10, intron 27 of 30) -30453 ENSMUSG00000064472.1 ENSMUSG00000064472 ENSMUST00000082538 Gm23407 snRNA Interval_42799 chr13 19636046 19636776 + 0 NA Intergenic Intergenic 11656 ENSMUSG00000021319.7 ENSMUSG00000021319 ENSMUST00000222992 Sfrp4 protein_coding Interval_62843 chr15 97368339 97369634 + 0 NA intron (ENSMUSG00000044250.8, intron 1 of 1) protein_coding-intron (ENSMUSG00000044250.8, intron 4 of 5) 7784 ENSMUSG00000044250.8 ENSMUSG00000044250 ENSMUST00000226495 Pced1b protein_coding Interval_140623 chr6 120164791 120165129 + 0 NA intron (ENSMUSG00000041377.12, intron 1 of 3) protein_coding-intron (ENSMUSG00000041377.12, intron 1 of 3) -21210 ENSMUSG00000095086.1 ENSMUSG00000095086 ENSMUST00000180263 Gm25327 snRNA Interval_15869 chr10 58576461 58576742 + 0 NA TTS (ENSMUSG00000038010.9) protein_coding-TTS (ENSMUSG00000038010.9) 21334 ENSMUSG00000112670.1 ENSMUSG00000112670 ENSMUST00000219887 Gm18042 processed_pseudogene Interval_156062 chr8 43293734 43293993 + 0 NA Intergenic Intergenic 13073 ENSMUSG00000051176.6 ENSMUSG00000051176 ENSMUST00000082120 Zfp42 protein_coding Interval_97725 chr2 143450852 143451571 + 0 NA Intergenic Intergenic 55848 ENSMUSG00000080895.1 ENSMUSG00000080895 ENSMUST00000121589 Gm11645 processed_pseudogene Interval_76012 chr17 74344678 74345907 + 0 NA intron (ENSMUSG00000024068.8, intron 1 of 15) protein_coding-intron (ENSMUSG00000024068.8, intron 1 of 16) 6255 ENSMUSG00000024068.8 ENSMUSG00000024068 ENSMUST00000233554 Spast protein_coding Interval_100718 chr2 171994384 171995322 + 0 NA Intergenic Intergenic -5658 ENSMUSG00000085426.1 ENSMUSG00000085426 ENSMUST00000133525 Gm14272 lincRNA Interval_171849 chr9 121762710 121762909 + 0 NA exon (ENSMUSG00000013419.7, exon 2 of 6) protein_coding-exon (ENSMUSG00000013419.7, exon 2 of 6) -1208 ENSMUSG00000013419.7 ENSMUSG00000013419 ENSMUST00000213743 Zfp651 protein_coding Interval_50008 chr13 119676244 119676463 + 0 NA Intergenic Intergenic -3687 ENSMUSG00000099872.1 ENSMUSG00000099872 ENSMUST00000189831 1700074H08Rik lincRNA Interval_22329 chr11 8859730 8861140 + 0 NA intron (ENSMUSG00000046634.12, intron 32 of 42) protein_coding-intron (ENSMUSG00000046634.12, intron 39 of 49) 24861 ENSMUSG00000082095.1 ENSMUSG00000082095 ENSMUST00000119652 Gm11991 processed_pseudogene Interval_53849 chr14 62747161 62747816 + 0 NA intron (ENSMUSG00000035161.7, intron 3 of 4) protein_coding-intron (ENSMUSG00000035161.7, intron 3 of 18) -32209 ENSMUSG00000115371.1 ENSMUSG00000115371 ENSMUST00000226895 Gm18146 processed_pseudogene Interval_76818 chr17 84269666 84271439 + 0 NA exon (ENSMUSG00000024251.10, exon 15 of 15) protein_coding-exon (ENSMUSG00000024251.10, exon 15 of 15) 17195 ENSMUSG00000065732.1 ENSMUSG00000065732 ENSMUST00000083798 Gm24492 snRNA Interval_22468 chr11 10632928 10633169 + 0 NA Intergenic Intergenic -255966 ENSMUSG00000084045.1 ENSMUSG00000084045 ENSMUST00000118697 Gm11997 processed_pseudogene Interval_27329 chr11 66502661 66502987 + 0 NA promoter-TSS (ENSMUSG00000053930.13) protein_coding-promoter-TSS (ENSMUSG00000053930.13) -10 ENSMUSG00000053930.13 ENSMUSG00000053930 ENSMUST00000134562 Shisa6 protein_coding Interval_119691 chr4 139249874 139252491 + 0 NA intron (ENSMUSG00000028745.18, intron 2 of 9) protein_coding-intron (ENSMUSG00000028745.18, intron 2 of 8) 57071 ENSMUSG00000028745.18 ENSMUSG00000028745 ENSMUST00000132385 Capzb protein_coding Interval_130538 chr5 128653681 128654121 + 0 NA Intergenic Intergenic -48623 ENSMUSG00000029423.10 ENSMUSG00000029423 ENSMUST00000195959 Piwil1 protein_coding Interval_27609 chr11 69028187 69029399 + 0 NA promoter-TSS (ENSMUSG00000020898.18) protein_coding-promoter-TSS (ENSMUSG00000020898.18) -5728 ENSMUSG00000020898.18 ENSMUSG00000020898 ENSMUST00000161271 Ctc1 protein_coding Interval_158504 chr8 84127026 84127900 + 0 NA promoter-TSS (ENSMUSG00000012889.8) protein_coding-promoter-TSS (ENSMUSG00000012889.8) -355 ENSMUSG00000012889.8 ENSMUSG00000012889 ENSMUST00000147175 Podnl1 protein_coding Interval_119785 chr4 139977336 139979412 + 0 NA Intergenic Intergenic -10348 ENSMUSG00000078234.6 ENSMUSG00000078234 ENSMUST00000105031 Klhdc7a protein_coding Interval_54893 chr14 76069657 76070086 + 0 NA Intergenic Intergenic 40889 ENSMUSG00000022008.4 ENSMUSG00000022008 ENSMUST00000022585 Gpalpp1 protein_coding Interval_27788 chr11 70005549 70006208 + 0 NA intron (ENSMUSG00000020888.16, intron 5 of 15) protein_coding-intron (ENSMUSG00000020888.16, intron 5 of 14) 5261 ENSMUSG00000020888.16 ENSMUSG00000020888 ENSMUST00000152732 Dvl2 protein_coding Interval_77469 chr17 89286072 89286340 + 0 NA Intergenic Intergenic -34021 ENSMUSG00000117364.1 ENSMUSG00000117364 ENSMUST00000234989 4933400B14Rik lincRNA Interval_105004 chr3 79642249 79642445 + 0 NA exon (ENSMUSG00000034009.14, exon 18 of 18) protein_coding-exon (ENSMUSG00000034009.14, exon 18 of 18) 11164 ENSMUSG00000034009.14 ENSMUSG00000034009 ENSMUST00000183040 Rxfp1 protein_coding Interval_100686 chr2 171576713 171577875 + 0 NA Intergenic Intergenic -270863 ENSMUSG00000088505.1 ENSMUSG00000088505 ENSMUST00000157880 Gm26489 scaRNA Interval_1684 chr1 31090681 31090938 + 0 NA intron (ENSMUSG00000086727.8, intron 3 of 5) protein_coding-intron (ENSMUSG00000086727.8, intron 3 of 5) 32053 ENSMUSG00000098529.1 ENSMUSG00000098529 ENSMUST00000184868 Gm27362 rRNA Interval_3826 chr1 63293498 63293709 + 0 NA intron (ENSMUSG00000027520.16, intron 4 of 4) protein_coding-intron (ENSMUSG00000027520.16, intron 1 of 2) 6780 ENSMUSG00000094214.1 ENSMUSG00000094214 ENSMUST00000083151 Gm23448 snRNA Interval_57445 chr15 11008865 11009160 + 0 NA intron (ENSMUSG00000022243.10, intron 2 of 6) protein_coding-intron (ENSMUSG00000022243.10, intron 2 of 6) 8291 ENSMUSG00000022243.10 ENSMUSG00000022243 ENSMUST00000117100 Slc45a2 protein_coding Interval_26026 chr11 53541598 53542790 + 0 NA TTS (ENSMUSG00000018398.18) protein_coding-TTS (ENSMUSG00000018398.18) 22267 ENSMUSG00000018398.18 ENSMUSG00000018398 ENSMUST00000145927 Septin8 protein_coding Interval_133736 chr6 10860736 10861775 + 0 NA Intergenic Intergenic 2828 ENSMUSG00000098845.1 ENSMUSG00000098845 ENSMUST00000184177 Gm27894 misc_RNA Interval_168189 chr9 77838744 77838964 + 0 NA intron (ENSMUSG00000111250.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000111250.1, intron 1 of 1) 2824 ENSMUSG00000111250.1 ENSMUSG00000111250 ENSMUST00000214737 Gm47818 lincRNA Interval_18789 chr10 90804288 90804988 + 0 NA intron (ENSMUSG00000058589.14, intron 4 of 11) protein_coding-intron (ENSMUSG00000058589.14, intron 3 of 11) -8445 ENSMUSG00000112015.1 ENSMUSG00000112015 ENSMUST00000219938 Gm47592 TEC Interval_136952 chr6 65048687 65049670 + 0 NA intron (ENSMUSG00000029920.9, intron 3 of 3) protein_coding-intron (ENSMUSG00000029920.9, intron 2 of 23) 6511 ENSMUSG00000029920.9 ENSMUSG00000029920 ENSMUST00000203104 Smarcad1 protein_coding Interval_34552 chr12 5066084 5068173 + 0 NA exon (ENSMUSG00000112723.1, exon 1 of 1) processed_pseudogene-exon (ENSMUSG00000112723.1, exon 1 of 1) 320 ENSMUSG00000112723.1 ENSMUSG00000112723 ENSMUST00000219035 Gm9110 processed_pseudogene Interval_56032 chr14 104935667 104935894 + 0 NA intron (ENSMUSG00000115432.1, intron 3 of 5) lincRNA-intron (ENSMUSG00000115432.1, intron 3 of 5) -35647 ENSMUSG00000077425.1 ENSMUSG00000077425 ENSMUST00000104237 Gm24280 snoRNA Interval_170055 chr9 104102479 104103652 + 0 NA promoter-TSS (ENSMUSG00000079355.5) protein_coding-promoter-TSS (ENSMUSG00000079355.5) -1371 ENSMUSG00000111218.1 ENSMUSG00000111218 ENSMUST00000216305 Gm46999 TEC Interval_99990 chr2 166273438 166274109 + 0 NA promoter-TSS (ENSMUSG00000084840.1) lincRNA-promoter-TSS (ENSMUSG00000084840.1) -135 ENSMUSG00000084840.1 ENSMUSG00000084840 ENSMUST00000152987 Gm11468 lincRNA Interval_128527 chr5 113842715 113845320 + 0 NA TTS (ENSMUSG00000090458.1) antisense-TTS (ENSMUSG00000090458.1) 1416 ENSMUSG00000090458.1 ENSMUSG00000090458 ENSMUST00000166047 Gm17122 antisense Interval_151285 chr7 120670111 120670622 + 0 NA promoter-TSS (ENSMUSG00000030887.4) protein_coding-promoter-TSS (ENSMUSG00000030887.4) -27 ENSMUSG00000030887.4 ENSMUSG00000030887 ENSMUST00000208635 Pdzd9 protein_coding Interval_173420 chrX 93097509 93098133 + 0 NA Intergenic Intergenic -58333 ENSMUSG00000095110.1 ENSMUSG00000095110 ENSMUST00000088134 1700003E24Rik lincRNA Interval_19520 chr10 101937325 101937651 + 0 NA intron (ENSMUSG00000019888.16, intron 3 of 8) protein_coding-intron (ENSMUSG00000019888.16, intron 2 of 5) 164796 ENSMUSG00000092952.1 ENSMUSG00000092952 ENSMUST00000175211 Mir3059 miRNA Interval_291 KZ289089.1 125870 126239 + 0 NA NA NA NA NA Interval_143645 chr7 13697621 13698025 + 0 NA Intergenic Intergenic 22083 ENSMUSG00000100468.1 ENSMUSG00000100468 ENSMUST00000191236 Tmem167-ps1 processed_pseudogene Interval_66039 chr16 31138862 31139131 + 0 NA intron (ENSMUSG00000049076.12, intron 6 of 23) protein_coding-intron (ENSMUSG00000049076.12, intron 5 of 21) -18874 ENSMUSG00000116943.1 ENSMUSG00000116943 ENSMUST00000231868 Gm18237 processed_pseudogene Interval_45342 chr13 54574561 54575889 + 0 NA exon (ENSMUSG00000025870.10, exon 1 of 4) protein_coding-exon (ENSMUSG00000025870.10, exon 1 of 4) 178 ENSMUSG00000025870.10 ENSMUSG00000025870 ENSMUST00000142246 Arl10 protein_coding Interval_83195 chr18 82688424 82689122 + 0 NA intron (ENSMUSG00000041258.18, intron 1 of 31) protein_coding-intron (ENSMUSG00000041258.18, intron 1 of 29) -3511 ENSMUSG00000097141.2 ENSMUSG00000097141 ENSMUST00000181931 Gm10524 TEC Interval_156705 chr8 57486894 57488400 + 0 NA promoter-TSS (ENSMUSG00000096917.2) processed_transcript-promoter-TSS (ENSMUSG00000096917.2) 213 ENSMUSG00000031609.3 ENSMUSG00000031609 ENSMUST00000034022 Sap30 protein_coding Interval_73138 chr17 35027226 35028178 + 0 NA promoter-TSS (ENSMUSG00000036185.9) protein_coding-promoter-TSS (ENSMUSG00000036185.9) 314 ENSMUSG00000036185.9 ENSMUSG00000036185 ENSMUST00000174117 Sapcd1 protein_coding Interval_5995 chr1 93790965 93792946 + 0 NA TTS (ENSMUSG00000026281.15) protein_coding-TTS (ENSMUSG00000026281.15) 7406 ENSMUSG00000026281.15 ENSMUSG00000026281 ENSMUST00000112890 Dtymk protein_coding Interval_68965 chr16 89773433 89774765 + 0 NA Intergenic Intergenic 21183 ENSMUSG00000002489.16 ENSMUSG00000002489 ENSMUST00000136760 Tiam1 protein_coding Interval_117750 chr4 126003836 126004040 + 0 NA Intergenic Intergenic -20788 ENSMUSG00000028859.14 ENSMUSG00000028859 ENSMUST00000140426 Csf3r protein_coding Interval_127782 chr5 107780084 107781046 + 0 NA intron (ENSMUSG00000011831.16, intron 6 of 7) protein_coding-intron (ENSMUSG00000011831.16, intron 16 of 17) 27142 ENSMUSG00000106288.1 ENSMUSG00000106288 ENSMUST00000198605 Gm43593 TEC Interval_164106 chr9 31528586 31530547 + 0 NA Intergenic Intergenic -30043 ENSMUSG00000111853.1 ENSMUSG00000111853 ENSMUST00000216695 Gm31408 lincRNA Interval_84019 chr19 6140547 6142033 + 0 NA promoter-TSS (ENSMUSG00000024944.6) protein_coding-promoter-TSS (ENSMUSG00000024944.6) -1326 ENSMUSG00000024944.6 ENSMUSG00000024944 ENSMUST00000123193 Arl2 protein_coding Interval_74725 chr17 56170532 56170790 + 0 NA intron (ENSMUSG00000044469.8, intron 1 of 1) protein_coding-intron (ENSMUSG00000044469.8, intron 1 of 1) 1464 ENSMUSG00000106418.1 ENSMUSG00000106418 ENSMUST00000195950 Gm44397 miRNA Interval_24530 chr11 34071901 34072769 + 0 NA intron (ENSMUSG00000002699.13, intron 7 of 19) protein_coding-intron (ENSMUSG00000002699.13, intron 7 of 20) -14669 ENSMUSG00000002699.13 ENSMUSG00000002699 ENSMUST00000146318 Lcp2 protein_coding Interval_83644 chr19 3434534 3435295 + 0 NA Intergenic Intergenic -20370 ENSMUSG00000024907.7 ENSMUSG00000024907 ENSMUST00000025842 Gal protein_coding Interval_79014 chr18 23945181 23945450 + 0 NA exon (ENSMUSG00000117405.1, exon 1 of 1) processed_pseudogene-exon (ENSMUSG00000117405.1, exon 1 of 1) 356 ENSMUSG00000117405.1 ENSMUSG00000117405 ENSMUST00000234075 Rpl19-ps7 processed_pseudogene Interval_51140 chr14 24100585 24100818 + 0 NA intron (ENSMUSG00000118519.1, intron 2 of 3) antisense-intron (ENSMUSG00000118519.1, intron 2 of 3) 11824 ENSMUSG00000105723.1 ENSMUSG00000105723 ENSMUST00000199094 Mir7210 miRNA Interval_107433 chr3 107630656 107632179 + 0 NA promoter-TSS (ENSMUSG00000078604.1) protein_coding-promoter-TSS (ENSMUSG00000078604.1) 95 ENSMUSG00000078604.1 ENSMUSG00000078604 ENSMUST00000106703 Gm10961 protein_coding Interval_13476 chr10 18506365 18507198 + 0 NA intron (ENSMUSG00000039835.16, intron 3 of 6) protein_coding-intron (ENSMUSG00000039835.16, intron 3 of 6) 39283 ENSMUSG00000019853.6 ENSMUSG00000019853 ENSMUST00000214548 Hebp2 protein_coding Interval_151835 chr7 127008296 127009656 + 0 NA TTS (ENSMUSG00000030681.18) protein_coding-TTS (ENSMUSG00000030681.18) 5574 ENSMUSG00000030681.18 ENSMUSG00000030681 ENSMUST00000206511 Mvp protein_coding Interval_45282 chr13 53948002 53948518 + 0 NA Intergenic Intergenic -13472 ENSMUSG00000113982.1 ENSMUSG00000113982 ENSMUST00000223115 Gm34557 lincRNA Interval_142317 chr6 140614072 140614804 + 0 NA Intergenic Intergenic 7985 ENSMUSG00000107750.1 ENSMUSG00000107750 ENSMUST00000204392 Gm44013 TEC Interval_134146 chr6 21936500 21936782 + 0 NA Intergenic Intergenic -13044 ENSMUSG00000029670.12 ENSMUSG00000029670 ENSMUST00000141689 Ing3 protein_coding Interval_56794 chr14 122129393 122129654 + 0 NA intron (ENSMUSG00000025544.13, intron 3 of 12) protein_coding-intron (ENSMUSG00000025544.13, intron 3 of 16) 7970 ENSMUSG00000090674.1 ENSMUSG00000090674 ENSMUST00000166043 Gm17082 processed_pseudogene Interval_134081 chr6 18997132 18997600 + 0 NA Intergenic Intergenic -49471 ENSMUSG00000084650.1 ENSMUSG00000084650 ENSMUST00000122701 Gm22718 misc_RNA Interval_62284 chr15 89453369 89454692 + 0 NA exon (ENSMUSG00000022619.5, exon 1 of 12) protein_coding-exon (ENSMUSG00000022619.5, exon 1 of 12) -1012 ENSMUSG00000022619.5 ENSMUSG00000022619 ENSMUST00000137755 Mapk8ip2 protein_coding Interval_169166 chr9 94774473 94774990 + 0 NA intron (ENSMUSG00000031129.9, intron 4 of 15) protein_coding-intron (ENSMUSG00000031129.9, intron 4 of 15) 22902 ENSMUSG00000098251.1 ENSMUSG00000098251 ENSMUST00000183864 Mir7656 miRNA Interval_74554 chr17 53312873 53313760 + 0 NA Intergenic Intergenic -8909 ENSMUSG00000117089.1 ENSMUSG00000117089 ENSMUST00000233402 Gm49914 processed_pseudogene Interval_20428 chr10 117533365 117533563 + 0 NA Intergenic Intergenic -25660 ENSMUSG00000112399.1 ENSMUSG00000112399 ENSMUST00000220286 Gm32235 lincRNA Interval_127167 chr5 100771622 100771911 + 0 NA exon (ENSMUSG00000035266.16, exon 13 of 18) protein_coding-exon (ENSMUSG00000035266.16, exon 13 of 18) 20960 ENSMUSG00000035266.16 ENSMUSG00000035266 ENSMUST00000144948 Helq protein_coding Interval_114285 chr4 70659751 70659959 + 0 NA Intergenic Intergenic -124927 ENSMUSG00000039270.9 ENSMUSG00000039270 ENSMUST00000037881 Megf9 protein_coding Interval_65478 chr16 22607724 22608686 + 0 NA intron (ENSMUSG00000022861.17, intron 3 of 5) protein_coding-intron (ENSMUSG00000022861.17, intron 3 of 23) 2879 ENSMUSG00000098448.1 ENSMUSG00000098448 ENSMUST00000184329 Mir6362 miRNA Interval_122127 chr5 17684102 17684835 + 0 NA intron (ENSMUSG00000028780.13, intron 11 of 17) protein_coding-intron (ENSMUSG00000028780.13, intron 11 of 17) 109702 ENSMUSG00000028780.13 ENSMUSG00000028780 ENSMUST00000115271 Sema3c protein_coding Interval_77646 chr17 93531922 93533957 + 0 NA Intergenic Intergenic -141241 ENSMUSG00000117368.1 ENSMUSG00000117368 ENSMUST00000234726 Gm50001 processed_pseudogene Interval_76999 chr17 85506770 85507728 + 0 NA Intergenic Intergenic 8616 ENSMUSG00000097803.1 ENSMUSG00000097803 ENSMUST00000181130 Rpl31-ps16 processed_pseudogene Interval_131369 chr5 136759779 136760381 + 0 NA intron (ENSMUSG00000004415.15, intron 4 of 5) protein_coding-intron (ENSMUSG00000004415.15, intron 4 of 12) 62301 ENSMUSG00000005474.9 ENSMUSG00000005474 ENSMUST00000197849 Myl10 protein_coding Interval_36640 chr12 51701899 51702191 + 0 NA intron (ENSMUSG00000020955.9, intron 1 of 5) protein_coding-intron (ENSMUSG00000020955.9, intron 1 of 5) 11012 ENSMUSG00000020955.9 ENSMUSG00000020955 ENSMUST00000021338 Ap4s1 protein_coding Interval_128217 chr5 111807446 111808589 + 0 NA Intergenic Intergenic 14630 ENSMUSG00000105376.4 ENSMUSG00000105376 ENSMUST00000200641 Gm36535 lincRNA Interval_9077 chr1 153452677 153454389 + 0 NA TTS (ENSMUSG00000042708.12) protein_coding-TTS (ENSMUSG00000042708.12) 8170 ENSMUSG00000042708.12 ENSMUSG00000042708 ENSMUST00000137861 Shcbp1l protein_coding Interval_134409 chr6 28421249 28422143 + 0 NA promoter-TSS (ENSMUSG00000029708.9) protein_coding-promoter-TSS (ENSMUSG00000029708.9) -2013 ENSMUSG00000020440.13 ENSMUSG00000020440 ENSMUST00000202028 Arf5 protein_coding Interval_85896 chr19 32807150 32807835 + 0 NA intron (ENSMUSG00000013663.7, intron 5 of 8) protein_coding-intron (ENSMUSG00000013663.7, intron 5 of 8) -3733 ENSMUSG00000013663.7 ENSMUSG00000013663 ENSMUST00000154806 Pten protein_coding Interval_55150 chr14 78670025 78670369 + 0 NA intron (ENSMUSG00000034731.11, intron 2 of 29) protein_coding-intron (ENSMUSG00000034731.11, intron 1 of 28) -33613 ENSMUSG00000115107.1 ENSMUSG00000115107 ENSMUST00000228480 Gm18368 processed_pseudogene Interval_51862 chr14 33095998 33097150 + 0 NA intron (ENSMUSG00000051506.17, intron 25 of 61) protein_coding-intron (ENSMUSG00000051506.17, intron 24 of 58) 88934 ENSMUSG00000051506.17 ENSMUSG00000051506 ENSMUST00000159606 Wdfy4 protein_coding Interval_6887 chr1 120374044 120375509 + 0 NA Intergenic Intergenic 34194 ENSMUSG00000036907.9 ENSMUSG00000036907 ENSMUST00000037286 C1ql2 protein_coding Interval_130356 chr5 126629583 126630804 + 0 NA Intergenic Intergenic -76721 ENSMUSG00000105673.1 ENSMUSG00000105673 ENSMUST00000197352 1700081B01Rik lincRNA Interval_67999 chr16 62939592 62939805 + 0 NA Intergenic Intergenic 41549 ENSMUSG00000022912.8 ENSMUSG00000022912 ENSMUST00000127502 Pros1 protein_coding Interval_157429 chr8 70301975 70303170 + 0 NA promoter-TSS (ENSMUSG00000057788.13) protein_coding-promoter-TSS (ENSMUSG00000057788.13) -120 ENSMUSG00000057788.13 ENSMUSG00000057788 ENSMUST00000127076 Ddx49 protein_coding Interval_123389 chr5 32119484 32121625 + 0 NA Intergenic Intergenic 12617 ENSMUSG00000102759.1 ENSMUSG00000102759 ENSMUST00000195772 Gm10463 TEC Interval_88345 chr2 4221521 4222559 + 0 NA intron (ENSMUSG00000026657.17, intron 1 of 22) protein_coding-intron (ENSMUSG00000026657.17, intron 1 of 22) 4959 ENSMUSG00000102357.1 ENSMUSG00000102357 ENSMUST00000191718 Gm38348 sense_intronic Interval_36697 chr12 52231676 52232621 + 0 NA intron (ENSMUSG00000035142.18, intron 3 of 3) protein_coding-intron (ENSMUSG00000035142.18, intron 6 of 10) 56061 ENSMUSG00000035142.18 ENSMUSG00000035142 ENSMUST00000162111 Nubpl protein_coding Interval_138636 chr6 90622916 90623133 + 0 NA intron (ENSMUSG00000030089.15, intron 1 of 9) protein_coding-intron (ENSMUSG00000030089.15, intron 1 of 9) 18299 ENSMUSG00000030089.15 ENSMUSG00000030089 ENSMUST00000032177 Slc41a3 protein_coding Interval_140742 chr6 120981451 120981977 + 0 NA intron (ENSMUSG00000051586.17, intron 20 of 33) protein_coding-intron (ENSMUSG00000051586.17, intron 4 of 15) 22870 ENSMUSG00000108171.1 ENSMUSG00000108171 ENSMUST00000203013 Gm43915 antisense Interval_1840 chr1 34090830 34091437 + 0 NA intron (ENSMUSG00000026131.20, intron 1 of 3) protein_coding-intron (ENSMUSG00000026131.20, intron 2 of 97) 13906 ENSMUSG00000026131.20 ENSMUSG00000026131 ENSMUST00000182507 Dst protein_coding Interval_163398 chr9 21250000 21250374 + 0 NA TTS (ENSMUSG00000111623.1) TEC-TTS (ENSMUSG00000111623.1) -1744 ENSMUSG00000045087.8 ENSMUSG00000045087 ENSMUST00000122088 S1pr5 protein_coding Interval_74310 chr17 48757316 48759182 + 0 NA Intergenic Intergenic -19503 ENSMUSG00000110276.1 ENSMUSG00000110276 ENSMUST00000209681 Gm45330 lincRNA Interval_170758 chr9 110568082 110568492 + 0 NA TTS (ENSMUSG00000044791.16) protein_coding-TTS (ENSMUSG00000044791.16) -5335 ENSMUSG00000044791.16 ENSMUSG00000044791 ENSMUST00000197260 Setd2 protein_coding Interval_158605 chr8 84715897 84716448 + 0 NA exon (ENSMUSG00000001911.16, exon 9 of 11) protein_coding-exon (ENSMUSG00000001911.16, exon 9 of 11) -6835 ENSMUSG00000074203.4 ENSMUSG00000074203 ENSMUST00000098571 G430095P16Rik protein_coding Interval_74029 chr17 46159952 46161565 + 0 NA promoter-TSS (ENSMUSG00000023952.13) protein_coding-promoter-TSS (ENSMUSG00000023952.13) -308 ENSMUSG00000023952.13 ENSMUSG00000023952 ENSMUST00000166663 Gtpbp2 protein_coding Interval_103692 chr3 51662348 51662562 + 0 NA intron (ENSMUSG00000074604.9, intron 1 of 2) protein_coding-intron (ENSMUSG00000074604.9, intron 1 of 4) -10346 ENSMUSG00000103527.1 ENSMUSG00000103527 ENSMUST00000194360 Gm37261 TEC Interval_172597 chrX 37217563 37218605 + 0 NA intron (ENSMUSG00000071773.4, intron 2 of 4) protein_coding-intron (ENSMUSG00000071773.4, intron 2 of 4) 4174 ENSMUSG00000071773.4 ENSMUSG00000071773 ENSMUST00000115210 Rhox1 protein_coding Interval_115672 chr4 101927358 101928173 + 0 NA Intergenic Intergenic -12642 ENSMUSG00000070890.3 ENSMUSG00000070890 ENSMUST00000052027 Gm12794 protein_coding Interval_37655 chr12 70875252 70876125 + 0 NA intron (ENSMUSG00000048285.9, intron 3 of 11) protein_coding-intron (ENSMUSG00000048285.9, intron 3 of 13) 36463 ENSMUSG00000113584.1 ENSMUSG00000113584 ENSMUST00000221434 Gm46355 lincRNA Interval_142001 chr6 136478140 136478477 + 0 NA Intergenic Intergenic 8878 ENSMUSG00000091408.3 ENSMUSG00000091408 ENSMUST00000178117 Gm6728 processed_pseudogene Interval_46467 chr13 66396681 66397137 + 0 NA exon (ENSMUSG00000114629.1, exon 1 of 1) processed_pseudogene-exon (ENSMUSG00000114629.1, exon 1 of 1) 623 ENSMUSG00000114629.1 ENSMUSG00000114629 ENSMUST00000224269 Gm48244 processed_pseudogene Interval_152419 chr7 132902051 132902730 + 0 NA intron (ENSMUSG00000097595.2, intron 1 of 2) protein_coding-intron (ENSMUSG00000030849.18, intron 2 of 6) -8699 ENSMUSG00000109842.1 ENSMUSG00000109842 ENSMUST00000209561 Gm45502 lincRNA Interval_4459 chr1 74332157 74333084 + 0 NA promoter-TSS (ENSMUSG00000026179.14) protein_coding-promoter-TSS (ENSMUSG00000026179.14) -43 ENSMUSG00000026179.14 ENSMUSG00000026179 ENSMUST00000190398 Pnkd protein_coding Interval_55481 chr14 88374654 88374861 + 0 NA Intergenic Intergenic -19260 ENSMUSG00000115533.1 ENSMUSG00000115533 ENSMUST00000228887 Gm48929 processed_pseudogene Interval_145421 chr7 34652868 34656046 + 0 NA promoter-TSS (ENSMUSG00000030499.9) protein_coding-promoter-TSS (ENSMUSG00000030499.9) -68 ENSMUSG00000030499.9 ENSMUSG00000030499 ENSMUST00000205843 Kctd15 protein_coding Interval_143035 chr6 148768301 148769668 + 0 NA Intergenic Intergenic 30848 ENSMUSG00000040029.15 ENSMUSG00000040029 ENSMUST00000205196 Ipo8 protein_coding Interval_51870 chr14 33205253 33205832 + 0 NA Intergenic Intergenic -1610 ENSMUSG00000077612.1 ENSMUSG00000077612 ENSMUST00000104424 Gm25498 snoRNA Interval_56954 chr14 123999299 123999493 + 0 NA intron (ENSMUSG00000099994.1, intron 2 of 3) protein_coding-intron (ENSMUSG00000025551.13, intron 3 of 4) 11761 ENSMUSG00000099994.1 ENSMUSG00000099994 ENSMUST00000190088 1700024B18Rik antisense Interval_125497 chr5 67651241 67651789 + 0 NA intron (ENSMUSG00000037685.15, intron 28 of 33) protein_coding-intron (ENSMUSG00000037685.15, intron 31 of 36) 9114 ENSMUSG00000085363.1 ENSMUSG00000085363 ENSMUST00000145914 Gm15478 antisense Interval_70435 chr17 10217660 10218218 + 0 NA intron (ENSMUSG00000062078.15, intron 4 of 6) protein_coding-intron (ENSMUSG00000062078.15, intron 4 of 6) 101422 ENSMUSG00000062078.15 ENSMUSG00000062078 ENSMUST00000233684 Qk protein_coding Interval_54058 chr14 64843555 64843832 + 0 NA intron (ENSMUSG00000021972.14, intron 5 of 9) protein_coding-intron (ENSMUSG00000021972.14, intron 6 of 10) -4434 ENSMUSG00000102764.1 ENSMUSG00000102764 ENSMUST00000191712 Gm37183 TEC Interval_78877 chr18 21096368 21097004 + 0 NA intron (ENSMUSG00000024313.8, intron 13 of 14) protein_coding-intron (ENSMUSG00000024313.8, intron 13 of 14) -19577 ENSMUSG00000062962.5 ENSMUSG00000062962 ENSMUST00000084199 Gm6378 processed_pseudogene Interval_101748 chr3 9358656 9359443 + 0 NA Intergenic Intergenic -43126 ENSMUSG00000088229.1 ENSMUSG00000088229 ENSMUST00000157604 Gm22604 misc_RNA Interval_163494 chr9 21712843 21713205 + 0 NA Intergenic Intergenic 10426 ENSMUSG00000097155.1 ENSMUSG00000097155 ENSMUST00000181400 Gm26511 lincRNA Interval_83364 chr18 84588611 84590365 + 0 NA promoter-TSS (ENSMUSG00000048410.17) protein_coding-promoter-TSS (ENSMUSG00000048410.17) -36257 ENSMUSG00000117676.1 ENSMUSG00000117676 ENSMUST00000236074 Gm50314 antisense Interval_139728 chr6 108167838 108168205 + 0 NA intron (ENSMUSG00000030101.15, intron 2 of 7) protein_coding-intron (ENSMUSG00000030101.15, intron 3 of 8) 17535 ENSMUSG00000030101.15 ENSMUSG00000030101 ENSMUST00000171697 Sumf1 protein_coding Interval_147794 chr7 73584824 73587387 + 0 NA Intergenic Intergenic -22843 ENSMUSG00000108724.1 ENSMUSG00000108724 ENSMUST00000206025 Gm44734 lincRNA Interval_102403 chr3 24079333 24080476 + 0 NA intron (ENSMUSG00000102758.3, intron 9 of 13) protein_coding-intron (ENSMUSG00000102758.3, intron 9 of 13) -253164 ENSMUSG00000057036.7 ENSMUSG00000057036 ENSMUST00000077389 Gm7536 processed_pseudogene Interval_95381 chr2 107478498 107478968 + 0 NA Intergenic Intergenic 121806 ENSMUSG00000052005.8 ENSMUSG00000052005 ENSMUST00000090043 Gm9864 pseudogene Interval_134527 chr6 29338059 29338587 + 0 NA Intergenic Intergenic -15117 ENSMUSG00000090692.1 ENSMUSG00000090692 ENSMUST00000171782 Gm17172 antisense Interval_136941 chr6 64974048 64975011 + 0 NA Intergenic Intergenic -3986 ENSMUSG00000107783.1 ENSMUSG00000107783 ENSMUST00000203952 Gm44038 processed_pseudogene Interval_146204 chr7 44677678 44677869 + 0 NA exon (ENSMUSG00000070574.2, exon 2 of 2) antisense-exon (ENSMUSG00000070574.2, exon 2 of 2) 9540 ENSMUSG00000070574.2 ENSMUSG00000070574 ENSMUST00000094460 2310016G11Rik antisense Interval_158768 chr8 86213765 86214604 + 0 NA Intergenic Intergenic -19670 ENSMUSG00000088192.1 ENSMUSG00000088192 ENSMUST00000157567 Gm23904 snoRNA Interval_141340 chr6 127439671 127440917 + 0 NA Intergenic Intergenic 29164 ENSMUSG00000106883.1 ENSMUSG00000106883 ENSMUST00000200875 Gm34091 processed_pseudogene Interval_21106 chr10 126462986 126463308 + 0 NA Intergenic Intergenic 91172 ENSMUSG00000112482.1 ENSMUSG00000112482 ENSMUST00000218075 1700025K04Rik lincRNA Interval_54626 chr14 72446754 72447461 + 0 NA intron (ENSMUSG00000109446.1, intron 40 of 54) protein_coding-intron (ENSMUSG00000109446.1, intron 40 of 54) 44731 ENSMUSG00000109446.1 ENSMUSG00000109446 ENSMUST00000208955 Gm9195 protein_coding Interval_160482 chr8 109886758 109886969 + 0 NA intron (ENSMUSG00000031732.12, intron 2 of 18) protein_coding-intron (ENSMUSG00000031732.12, intron 2 of 18) 18260 ENSMUSG00000031732.12 ENSMUSG00000031732 ENSMUST00000034175 Phlpp2 protein_coding Interval_2192 chr1 36938971 36940460 + 0 NA promoter-TSS (ENSMUSG00000026116.11) protein_coding-promoter-TSS (ENSMUSG00000026116.11) 107 ENSMUSG00000026116.11 ENSMUSG00000026116 ENSMUST00000185964 Tmem131 protein_coding Interval_139968 chr6 113110382 113110724 + 0 NA exon (ENSMUSG00000034269.12, exon 1 of 6) protein_coding-exon (ENSMUSG00000034269.12, exon 1 of 6) 136 ENSMUSG00000034269.12 ENSMUSG00000034269 ENSMUST00000156048 Setd5 protein_coding Interval_161734 chr8 122423248 122424978 + 0 NA TTS (ENSMUSG00000006519.11) protein_coding-TTS (ENSMUSG00000006519.11) 2093 ENSMUSG00000046108.3 ENSMUSG00000046108 ENSMUST00000050963 Il17c protein_coding Interval_21532 chr10 129297381 129297890 + 0 NA Intergenic Intergenic -4456 ENSMUSG00000077280.1 ENSMUSG00000077280 ENSMUST00000104092 Gm25764 snoRNA Interval_45299 chr13 54152561 54154125 + 0 NA Intergenic Intergenic 12408 ENSMUSG00000114042.1 ENSMUSG00000114042 ENSMUST00000220543 Gm18473 processed_pseudogene Interval_96519 chr2 125251988 125252484 + 0 NA intron (ENSMUSG00000027203.15, intron 4 of 6) protein_coding-intron (ENSMUSG00000027203.15, intron 3 of 5) 4336 ENSMUSG00000027203.15 ENSMUSG00000027203 ENSMUST00000133211 Dut protein_coding Interval_92417 chr2 59623859 59624360 + 0 NA intron (ENSMUSG00000035168.16, intron 1 of 1) protein_coding-intron (ENSMUSG00000035168.16, intron 1 of 26) -59425 ENSMUSG00000081157.1 ENSMUSG00000081157 ENSMUST00000118837 Gm13552 processed_pseudogene Interval_48253 chr13 97454630 97456058 + 0 NA intron (ENSMUSG00000078952.9, intron 1 of 1) lincRNA-intron (ENSMUSG00000078952.9, intron 1 of 1) 3733 ENSMUSG00000098238.1 ENSMUSG00000098238 ENSMUST00000183250 Gm8756 processed_pseudogene Interval_162149 chr8 125523120 125523857 + 0 NA intron (ENSMUSG00000001995.9, intron 1 of 22) protein_coding-intron (ENSMUSG00000001995.9, intron 1 of 21) 46320 ENSMUSG00000001995.9 ENSMUSG00000001995 ENSMUST00000212604 Sipa1l2 protein_coding Interval_20182 chr10 115474799 115475555 + 0 NA exon (ENSMUSG00000020140.15, exon 6 of 18) protein_coding-exon (ENSMUSG00000020140.15, exon 6 of 18) 46670 ENSMUSG00000034163.10 ENSMUSG00000034163 ENSMUST00000141246 Zfc3h1 protein_coding Interval_127506 chr5 104703547 104703935 + 0 NA Intergenic Intergenic -72038 ENSMUSG00000048334.8 ENSMUSG00000048334 ENSMUST00000055593 Gm8258 processed_pseudogene Interval_110103 chr3 153313242 153314320 + 0 NA promoter-TSS (ENSMUSG00000099114.1) miRNA-promoter-TSS (ENSMUSG00000099114.1) 68 ENSMUSG00000099114.1 ENSMUSG00000099114 ENSMUST00000184201 Gm27405 miRNA Interval_8976 chr1 152852538 152852886 + 0 NA intron (ENSMUSG00000042772.15, intron 11 of 22) protein_coding-intron (ENSMUSG00000042772.15, intron 11 of 22) -3792 ENSMUSG00000042772.15 ENSMUSG00000042772 ENSMUST00000188937 Smg7 protein_coding Interval_58979 chr15 41244012 41245079 + 0 NA Intergenic Intergenic -1387 ENSMUSG00000116178.1 ENSMUSG00000116178 ENSMUST00000229823 Gm49529 processed_pseudogene Interval_49326 chr13 110866310 110867120 + 0 NA Intergenic Intergenic -6044 ENSMUSG00000114320.1 ENSMUSG00000114320 ENSMUST00000224712 Gm30839 processed_pseudogene Interval_22224 chr11 7281785 7282716 + 0 NA intron (ENSMUSG00000087637.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000087637.1, intron 1 of 1) 8124 ENSMUSG00000087637.1 ENSMUSG00000087637 ENSMUST00000149481 Gm11986 lincRNA Interval_17169 chr10 73447960 73448312 + 0 NA intron (ENSMUSG00000052613.16, intron 1 of 1) protein_coding-intron (ENSMUSG00000052613.16, intron 1 of 13) -41838 ENSMUSG00000085176.1 ENSMUSG00000085176 ENSMUST00000145790 Gm15397 sense_intronic Interval_123057 chr5 29311460 29311871 + 0 NA intron (ENSMUSG00000010721.15, intron 4 of 16) protein_coding-intron (ENSMUSG00000010721.15, intron 5 of 16) 25181 ENSMUSG00000093302.1 ENSMUSG00000093302 ENSMUST00000175561 Gm23801 miRNA Interval_85391 chr19 25449363 25449678 + 0 NA Intergenic Intergenic 4543 ENSMUSG00000064843.1 ENSMUSG00000064843 ENSMUST00000082909 Gm26207 snRNA Interval_163522 chr9 21846793 21848395 + 0 NA intron (ENSMUSG00000032198.9, intron 1 of 23) protein_coding-intron (ENSMUSG00000032198.9, intron 1 of 48) 5024 ENSMUSG00000032198.9 ENSMUSG00000032198 ENSMUST00000213775 Dock6 protein_coding Interval_148521 chr7 82070533 82070918 + 0 NA intron (ENSMUSG00000109145.1, intron 1 of 3) lincRNA-intron (ENSMUSG00000109145.1, intron 1 of 3) 338 ENSMUSG00000109145.1 ENSMUSG00000109145 ENSMUST00000208972 Gm20744 lincRNA Interval_128606 chr5 114273449 114274685 + 0 NA promoter-TSS (ENSMUSG00000042002.11) protein_coding-promoter-TSS (ENSMUSG00000042002.11) -318 ENSMUSG00000042002.11 ENSMUSG00000042002 ENSMUST00000147953 Foxn4 protein_coding Interval_90057 chr2 27581413 27582790 + 0 NA Intergenic Intergenic 41675 ENSMUSG00000085929.1 ENSMUSG00000085929 ENSMUST00000132898 Gm13421 processed_transcript Interval_125731 chr5 73647312 73648043 + 0 NA promoter-TSS (ENSMUSG00000106773.1) TEC-promoter-TSS (ENSMUSG00000106773.1) -86 ENSMUSG00000106773.1 ENSMUSG00000106773 ENSMUST00000201845 Gm43799 TEC Interval_70174 chr17 5968633 5969276 + 0 NA intron (ENSMUSG00000023805.17, intron 1 of 25) protein_coding-intron (ENSMUSG00000023805.17, intron 1 of 25) 29867 ENSMUSG00000116734.1 ENSMUSG00000116734 ENSMUST00000231634 Gm8376 processed_pseudogene Interval_132063 chr5 142561070 142561433 + 0 NA Intergenic Intergenic 4807 ENSMUSG00000105213.1 ENSMUSG00000105213 ENSMUST00000196808 Gm43037 unprocessed_pseudogene Interval_167867 chr9 73159468 73159693 + 0 NA Intergenic Intergenic 16161 ENSMUSG00000066478.3 ENSMUSG00000066478 ENSMUST00000183748 Gm5745 processed_pseudogene Interval_67935 chr16 59685913 59686154 + 0 NA intron (ENSMUSG00000055540.15, intron 14 of 17) protein_coding-intron (ENSMUSG00000055540.15, intron 14 of 17) 46824 ENSMUSG00000116894.1 ENSMUSG00000116894 ENSMUST00000232302 4930547E14Rik processed_transcript Interval_40586 chr12 105858189 105859116 + 0 NA Intergenic Intergenic -5610 ENSMUSG00000113537.1 ENSMUSG00000113537 ENSMUST00000221840 Gm48807 lincRNA Interval_73094 chr17 34769185 34769913 + 0 NA TTS (ENSMUSG00000092543.1) unprocessed_pseudogene-TTS (ENSMUSG00000092543.1) 1096 ENSMUSG00000098809.1 ENSMUSG00000098809 ENSMUST00000183571 Gm27471 miRNA Interval_63699 chr15 102931275 102932576 + 0 NA Intergenic Intergenic -4832 ENSMUSG00000050328.2 ENSMUSG00000050328 ENSMUST00000055562 Hoxc12 protein_coding Interval_15924 chr10 59335182 59335959 + 0 NA intron (ENSMUSG00000019916.14, intron 1 of 14) protein_coding-intron (ENSMUSG00000019916.14, intron 1 of 14) 12202 ENSMUSG00000019916.14 ENSMUSG00000019916 ENSMUST00000105466 P4ha1 protein_coding Interval_19549 chr10 103010664 103010890 + 0 NA intron (ENSMUSG00000036602.14, intron 4 of 4) protein_coding-intron (ENSMUSG00000036602.14, intron 3 of 3) 18339 ENSMUSG00000036602.14 ENSMUSG00000036602 ENSMUST00000218508 Alx1 protein_coding Interval_168248 chr9 78183619 78184375 + 0 NA intron (ENSMUSG00000032348.6, intron 1 of 5) protein_coding-intron (ENSMUSG00000032348.6, intron 1 of 5) 1223 ENSMUSG00000032348.6 ENSMUSG00000032348 ENSMUST00000034903 Gsta4 protein_coding Interval_161050 chr8 117166580 117166871 + 0 NA intron (ENSMUSG00000052557.11, intron 1 of 10) protein_coding-intron (ENSMUSG00000052557.11, intron 1 of 10) 8588 ENSMUSG00000052557.11 ENSMUSG00000052557 ENSMUST00000162997 Gan protein_coding Interval_20120 chr10 115035452 115036856 + 0 NA Intergenic Intergenic 44613 ENSMUSG00000096208.1 ENSMUSG00000096208 ENSMUST00000178475 Gm22070 snRNA Interval_44707 chr13 47318475 47319347 + 0 NA Intergenic Intergenic 22028 ENSMUSG00000114958.1 ENSMUSG00000114958 ENSMUST00000224746 Gm48612 lincRNA Interval_149106 chr7 93389099 93390148 + 0 NA Intergenic Intergenic 27945 ENSMUSG00000109315.1 ENSMUSG00000109315 ENSMUST00000207475 Gm45037 lincRNA Interval_14636 chr10 37337280 37337861 + 0 NA promoter-TSS (ENSMUSG00000097742.1) lincRNA-promoter-TSS (ENSMUSG00000097742.1) 84 ENSMUSG00000097742.1 ENSMUSG00000097742 ENSMUST00000181602 Gm26535 lincRNA Interval_133201 chr5 150505804 150506179 + 0 NA Intergenic Intergenic -3858 ENSMUSG00000106738.1 ENSMUSG00000106738 ENSMUST00000202066 Gm5 lincRNA Interval_40572 chr12 105798439 105798630 + 0 NA intron (ENSMUSG00000021111.15, intron 1 of 6) protein_coding-intron (ENSMUSG00000021111.15, intron 1 of 22) -30533 ENSMUSG00000021111.15 ENSMUSG00000021111 ENSMUST00000172089 Papola protein_coding Interval_122442 chr5 22705557 22706801 + 0 NA intron (ENSMUSG00000097207.7, intron 4 of 4) lincRNA-intron (ENSMUSG00000097207.7, intron 4 of 4) -11460 ENSMUSG00000106181.1 ENSMUSG00000106181 ENSMUST00000199146 Gm9523 processed_pseudogene Interval_116667 chr4 116550281 116550582 + 0 NA Intergenic Intergenic -1309 ENSMUSG00000087299.1 ENSMUSG00000087299 ENSMUST00000138426 Gm12953 antisense Interval_47720 chr13 91768835 91769147 + 0 NA intron (ENSMUSG00000021620.4, intron 5 of 14) protein_coding-intron (ENSMUSG00000021620.4, intron 5 of 14) 16885 ENSMUSG00000099004.1 ENSMUSG00000099004 ENSMUST00000185055 Gm27656 miRNA Interval_12550 chr1 195176152 195176920 + 0 NA promoter-TSS (ENSMUSG00000026616.16) protein_coding-promoter-TSS (ENSMUSG00000026616.16) -12918 ENSMUSG00000026616.16 ENSMUSG00000026616 ENSMUST00000195722 Cr2 protein_coding Interval_116076 chr4 107434035 107435837 + 0 NA TTS (ENSMUSG00000092723.1) miRNA-TTS (ENSMUSG00000092723.1) 364 ENSMUSG00000092723.1 ENSMUSG00000092723 ENSMUST00000174982 Gm24804 miRNA Interval_93578 chr2 74631473 74632149 + 0 NA promoter-TSS (ENSMUSG00000082973.1) processed_pseudogene-promoter-TSS (ENSMUSG00000082973.1) -29 ENSMUSG00000082973.1 ENSMUSG00000082973 ENSMUST00000117554 Gm13672 processed_pseudogene Interval_128171 chr5 111465532 111467025 + 0 NA Intergenic Intergenic 42689 ENSMUSG00000106560.1 ENSMUSG00000106560 ENSMUST00000196957 Gm43119 TEC Interval_105876 chr3 89868393 89869254 + 0 NA TTS (ENSMUSG00000027947.11) protein_coding-TTS (ENSMUSG00000027947.11) 30934 ENSMUSG00000046280.9 ENSMUSG00000046280 ENSMUST00000197454 She protein_coding Interval_7922 chr1 134591982 134592331 + 0 NA intron (ENSMUSG00000042207.17, intron 4 of 11) protein_coding-intron (ENSMUSG00000042207.17, intron 4 of 26) -30644 ENSMUSG00000042207.17 ENSMUSG00000042207 ENSMUST00000191572 Kdm5b protein_coding Interval_59556 chr15 55264350 55264951 + 0 NA Intergenic Intergenic -2047 ENSMUSG00000095792.1 ENSMUSG00000095792 ENSMUST00000179457 Gm26296 snRNA Interval_118955 chr4 134686034 134686749 + 0 NA intron (ENSMUSG00000037306.13, intron 1 of 8) protein_coding-intron (ENSMUSG00000037306.13, intron 2 of 12) 17376 ENSMUSG00000037306.13 ENSMUSG00000037306 ENSMUST00000176606 Man1c1 protein_coding Interval_15302 chr10 44343678 44343916 + 0 NA intron (ENSMUSG00000038160.7, intron 6 of 7) protein_coding-intron (ENSMUSG00000038160.7, intron 6 of 7) -15879 ENSMUSG00000089260.1 ENSMUSG00000089260 ENSMUST00000158635 Mir1929 miRNA Interval_21837 chr11 4666416 4667164 + 0 NA intron (ENSMUSG00000020412.16, intron 9 of 18) protein_coding-intron (ENSMUSG00000020412.16, intron 9 of 19) 29043 ENSMUSG00000020412.16 ENSMUSG00000020412 ENSMUST00000109930 Ascc2 protein_coding Interval_75642 chr17 69683470 69683844 + 0 NA Intergenic Intergenic -88880 ENSMUSG00000088581.1 ENSMUSG00000088581 ENSMUST00000157956 Gm22967 misc_RNA Interval_124052 chr5 37849042 37849557 + 0 NA Intergenic Intergenic -24717 ENSMUSG00000048450.10 ENSMUSG00000048450 ENSMUST00000183013 Msx1 protein_coding Interval_12460 chr1 193654895 193655996 + 0 NA Intergenic Intergenic -145271 ENSMUSG00000097850.2 ENSMUSG00000097850 ENSMUST00000180420 Mir205hg lincRNA Interval_124534 chr5 50122031 50123575 + 0 NA Intergenic Intergenic -28530 ENSMUSG00000104870.1 ENSMUSG00000104870 ENSMUST00000197958 4930448I18Rik lincRNA Interval_105089 chr3 81087853 81088040 + 0 NA intron (ENSMUSG00000028019.9, intron 1 of 5) protein_coding-intron (ENSMUSG00000028019.9, intron 1 of 5) -47509 ENSMUSG00000085106.1 ENSMUSG00000085106 ENSMUST00000146657 Gm16000 antisense Interval_137876 chr6 83100954 83102633 + 0 NA exon (ENSMUSG00000079511.8, exon 2 of 12) protein_coding-exon (ENSMUSG00000079511.8, exon 2 of 12) 135 ENSMUSG00000107499.1 ENSMUSG00000107499 ENSMUST00000134891 Ccdc142 protein_coding Interval_4809 chr1 79590228 79590440 + 0 NA Intergenic Intergenic 30700 ENSMUSG00000102235.1 ENSMUSG00000102235 ENSMUST00000195349 Gm37886 TEC Interval_46525 chr13 66824906 66825078 + 0 NA Intergenic Intergenic -9773 ENSMUSG00000117784.1 ENSMUSG00000117784 ENSMUST00000222552 Vmn2r-ps108 unprocessed_pseudogene Interval_149404 chr7 98164708 98165735 + 0 NA promoter-TSS (ENSMUSG00000035547.14) protein_coding-promoter-TSS (ENSMUSG00000035547.14) -259 ENSMUSG00000035547.14 ENSMUSG00000035547 ENSMUST00000129430 Capn5 protein_coding Interval_126731 chr5 92381358 92382444 + 0 NA intron (ENSMUSG00000034842.16, intron 1 of 2) protein_coding-intron (ENSMUSG00000034842.16, intron 2 of 9) -16416 ENSMUSG00000060183.6 ENSMUSG00000060183 ENSMUST00000077820 Cxcl11 polymorphic_pseudogene Interval_11536 chr1 182520099 182520331 + 0 NA Intergenic Intergenic -26035 ENSMUSG00000103878.1 ENSMUSG00000103878 ENSMUST00000192906 Gm8197 transcribed_processed_pseudogene Interval_73585 chr17 40817382 40817845 + 0 NA intron (ENSMUSG00000023926.8, intron 1 of 2) protein_coding-intron (ENSMUSG00000023926.8, intron 1 of 9) 6464 ENSMUSG00000023926.8 ENSMUSG00000023926 ENSMUST00000233619 Rhag protein_coding Interval_46494 chr13 66588694 66589524 + 0 NA Intergenic Intergenic -2193 ENSMUSG00000098452.1 ENSMUSG00000098452 ENSMUST00000183599 Gm27501 miRNA Interval_170581 chr9 109000677 109001140 + 0 NA intron (ENSMUSG00000025648.18, intron 2 of 6) protein_coding-intron (ENSMUSG00000025648.18, intron 3 of 13) 2020 ENSMUSG00000025648.18 ENSMUSG00000025648 ENSMUST00000198763 Pfkfb4 protein_coding Interval_147697 chr7 72193488 72193728 + 0 NA intron (ENSMUSG00000032776.9, intron 12 of 22) protein_coding-intron (ENSMUSG00000032776.9, intron 12 of 22) 35752 ENSMUSG00000032776.9 ENSMUSG00000032776 ENSMUST00000206755 Mctp2 protein_coding Interval_152030 chr7 128430856 128431696 + 0 NA Intergenic Intergenic -12518 ENSMUSG00000030844.11 ENSMUSG00000030844 ENSMUST00000147840 Rgs10 protein_coding Interval_103183 chr3 36442567 36442813 + 0 NA Intergenic Intergenic 21114 ENSMUSG00000105792.1 ENSMUSG00000105792 ENSMUST00000200194 Gm17887 processed_pseudogene Interval_66504 chr16 34485037 34485256 + 0 NA intron (ENSMUSG00000061751.16, intron 1 of 36) protein_coding-intron (ENSMUSG00000061751.16, intron 1 of 33) -181171 ENSMUSG00000022832.11 ENSMUSG00000022832 ENSMUST00000231612 Ropn1 protein_coding Interval_27638 chr11 69217501 69218408 + 0 NA TTS (ENSMUSG00000020890.11) protein_coding-TTS (ENSMUSG00000020890.11) 19068 ENSMUSG00000020890.11 ENSMUSG00000020890 ENSMUST00000155457 Gucy2e protein_coding Interval_92102 chr2 53201594 53201776 + 0 NA intron (ENSMUSG00000026960.6, intron 2 of 3) protein_coding-intron (ENSMUSG00000026960.6, intron 2 of 3) 9959 ENSMUSG00000026960.6 ENSMUSG00000026960 ENSMUST00000028336 Arl6ip6 protein_coding Interval_2314 chr1 37985539 37986595 + 0 NA exon (ENSMUSG00000058407.12, exon 5 of 5) protein_coding-exon (ENSMUSG00000058407.12, exon 5 of 5) 11826 ENSMUSG00000058407.12 ENSMUSG00000058407 ENSMUST00000194692 Txndc9 protein_coding Interval_103724 chr3 52045804 52047353 + 0 NA intron (ENSMUSG00000061143.15, intron 1 of 4) protein_coding-intron (ENSMUSG00000061143.15, intron 1 of 4) 17666 ENSMUSG00000104339.1 ENSMUSG00000104339 ENSMUST00000194534 C130089K02Rik TEC Interval_72959 chr17 33810009 33811067 + 0 NA promoter-TSS (ENSMUSG00000042099.16) protein_coding-promoter-TSS (ENSMUSG00000042099.16) -11482 ENSMUSG00000042099.16 ENSMUSG00000042099 ENSMUST00000174608 Kank3 protein_coding Interval_14633 chr10 37244611 37244999 + 0 NA Intergenic Intergenic 18943 ENSMUSG00000110799.1 ENSMUSG00000110799 ENSMUST00000217044 4930543K20Rik lincRNA Interval_73869 chr17 45026539 45027235 + 0 NA intron (ENSMUSG00000038954.14, intron 5 of 10) protein_coding-intron (ENSMUSG00000038954.14, intron 6 of 11) -120350 ENSMUSG00000117044.1 ENSMUSG00000117044 ENSMUST00000233532 Gm35097 lincRNA Interval_20554 chr10 118904720 118905393 + 0 NA Intergenic Intergenic 12145 ENSMUSG00000098162.1 ENSMUSG00000098162 ENSMUST00000182929 Gm26976 processed_pseudogene Interval_152098 chr7 129292924 129293473 + 0 NA intron (ENSMUSG00000070366.5, intron 2 of 2) protein_coding-intron (ENSMUSG00000070366.5, intron 1 of 6) 36151 ENSMUSG00000070366.5 ENSMUSG00000070366 ENSMUST00000205896 Plpp4 protein_coding Interval_129438 chr5 120166308 120166496 + 0 NA intron (ENSMUSG00000029594.12, intron 1 of 3) protein_coding-intron (ENSMUSG00000029594.12, intron 21 of 23) -9323 ENSMUSG00000029594.12 ENSMUSG00000029594 ENSMUST00000202788 Rbm19 protein_coding Interval_157161 chr8 66670018 66670869 + 0 NA Intergenic Intergenic 17604 ENSMUSG00000044014.9 ENSMUSG00000044014 ENSMUST00000211920 Npy5r protein_coding Interval_160 JH584304.1 30442 32791 + 0 NA NA NA NA NA Interval_94253 chr2 86588116 86588663 + 0 NA Intergenic Intergenic 10577 ENSMUSG00000111689.1 ENSMUSG00000111689 ENSMUST00000215600 Olfr1082 protein_coding Interval_13938 chr10 24834121 24835414 + 0 NA intron (ENSMUSG00000019989.8, intron 1 of 4) protein_coding-intron (ENSMUSG00000019989.8, intron 1 of 4) 1405 ENSMUSG00000019989.8 ENSMUSG00000019989 ENSMUST00000220209 Enpp3 protein_coding Interval_49463 chr13 112241334 112242118 + 0 NA Intergenic Intergenic 22533 ENSMUSG00000104438.1 ENSMUSG00000104438 ENSMUST00000192356 Gm37427 TEC Interval_39437 chr12 87407241 87409730 + 0 NA Intergenic Intergenic -12026 ENSMUSG00000114103.1 ENSMUSG00000114103 ENSMUST00000220777 Gm8557 processed_pseudogene Interval_166286 chr9 58053168 58053796 + 0 NA intron (ENSMUSG00000037716.15, intron 11 of 19) protein_coding-intron (ENSMUSG00000037716.15, intron 11 of 18) 21208 ENSMUSG00000086624.1 ENSMUSG00000086624 ENSMUST00000153106 Gm16130 antisense Interval_134383 chr6 27971744 27973157 + 0 NA intron (ENSMUSG00000024211.15, intron 3 of 5) protein_coding-intron (ENSMUSG00000024211.15, intron 2 of 9) -35700 ENSMUSG00000076067.1 ENSMUSG00000076067 ENSMUST00000102113 Mir592 miRNA Interval_104505 chr3 66978592 66979308 + 0 NA promoter-TSS (ENSMUSG00000027833.16) protein_coding-promoter-TSS (ENSMUSG00000027833.16) -139 ENSMUSG00000027833.16 ENSMUSG00000027833 ENSMUST00000195261 Shox2 protein_coding Interval_98787 chr2 154942298 154943383 + 0 NA intron (ENSMUSG00000027596.10, intron 1 of 4) protein_coding-intron (ENSMUSG00000027596.10, intron 1 of 4) -50058 ENSMUSG00000074656.12 ENSMUSG00000074656 ENSMUST00000135524 Eif2s2 protein_coding Interval_83926 chr19 5646960 5647141 + 0 NA TTS (ENSMUSG00000024927.8) protein_coding-TTS (ENSMUSG00000024927.8) 7787 ENSMUSG00000056917.13 ENSMUSG00000056917 ENSMUST00000236827 Sipa1 protein_coding Interval_69379 chr16 92590003 92590324 + 0 NA Intergenic Intergenic -22651 ENSMUSG00000097139.3 ENSMUSG00000097139 ENSMUST00000180989 Gm26626 antisense Interval_114370 chr4 74382956 74383578 + 0 NA intron (ENSMUSG00000028397.13, intron 19 of 21) protein_coding-intron (ENSMUSG00000028397.13, intron 19 of 21) 120458 ENSMUSG00000028397.13 ENSMUSG00000028397 ENSMUST00000150439 Kdm4c protein_coding Interval_152236 chr7 130835648 130836387 + 0 NA intron (ENSMUSG00000030849.18, intron 2 of 6) protein_coding-intron (ENSMUSG00000030849.18, intron 2 of 6) 30313 ENSMUSG00000086108.2 ENSMUSG00000086108 ENSMUST00000146366 Gm5602 antisense Interval_96289 chr2 121321405 121321736 + 0 NA TTS (ENSMUSG00000033526.16) protein_coding-TTS (ENSMUSG00000033526.16) 15589 ENSMUSG00000033526.16 ENSMUSG00000033526 ENSMUST00000134796 Ppip5k1 protein_coding Interval_18482 chr10 86498144 86499222 + 0 NA intron (ENSMUSG00000059602.14, intron 1 of 6) protein_coding-intron (ENSMUSG00000059602.14, intron 1 of 13) -6786 ENSMUSG00000059602.14 ENSMUSG00000059602 ENSMUST00000139197 Syn3 protein_coding Interval_30106 chr11 89236356 89237305 + 0 NA Intergenic Intergenic 65502 ENSMUSG00000048616.4 ENSMUSG00000048616 ENSMUST00000061728 Nog protein_coding Interval_158298 chr8 80917766 80919396 + 0 NA Intergenic Intergenic -15096 ENSMUSG00000098223.1 ENSMUSG00000098223 ENSMUST00000182279 Gm4891 processed_pseudogene Interval_89312 chr2 19238567 19239010 + 0 NA intron (ENSMUSG00000037683.14, intron 4 of 19) protein_coding-intron (ENSMUSG00000037683.14, intron 4 of 18) 39486 ENSMUSG00000037683.14 ENSMUSG00000037683 ENSMUST00000049255 Armc3 protein_coding Interval_150007 chr7 104602898 104603608 + 0 NA Intergenic Intergenic -1509 ENSMUSG00000051182.5 ENSMUSG00000051182 ENSMUST00000057385 Olfr655 protein_coding Interval_27618 chr11 69073058 69073871 + 0 NA promoter-TSS (ENSMUSG00000064899.1) snoRNA-promoter-TSS (ENSMUSG00000064899.1) 37 ENSMUSG00000064899.1 ENSMUSG00000064899 ENSMUST00000082965 Snord118 snoRNA Interval_88797 chr2 11113056 11113857 + 0 NA Intergenic Intergenic -13194 ENSMUSG00000083900.2 ENSMUSG00000083900 ENSMUST00000121757 Gm13294 processed_pseudogene Interval_108925 chr3 133378310 133378510 + 0 NA TTS (ENSMUSG00000028013.16) protein_coding-TTS (ENSMUSG00000028013.16) 53413 ENSMUSG00000080506.1 ENSMUSG00000080506 ENSMUST00000116856 Gm25042 miRNA Interval_15867 chr10 58555734 58556079 + 0 NA exon (ENSMUSG00000112670.1, exon 1 of 1) processed_pseudogene-exon (ENSMUSG00000112670.1, exon 1 of 1) 639 ENSMUSG00000112670.1 ENSMUSG00000112670 ENSMUST00000219887 Gm18042 processed_pseudogene Interval_162452 chr8 128918215 128918401 + 0 NA intron (ENSMUSG00000025808.17, intron 26 of 55) protein_coding-intron (ENSMUSG00000025808.17, intron 26 of 55) -99582 ENSMUSG00000077538.1 ENSMUSG00000077538 ENSMUST00000104350 Gm22545 snoRNA Interval_83648 chr19 3457529 3457841 + 0 NA intron (ENSMUSG00000024908.15, intron 7 of 7) protein_coding-intron (ENSMUSG00000024908.15, intron 22 of 22) -28405 ENSMUSG00000114315.1 ENSMUSG00000114315 ENSMUST00000224419 Gm48696 antisense Interval_65091 chr16 18955952 18956469 + 0 NA TTS (ENSMUSG00000099908.1) protein_coding-TTS (ENSMUSG00000099908.1) -11545 ENSMUSG00000083658.1 ENSMUSG00000083658 ENSMUST00000120082 Gm15798 processed_pseudogene Interval_111711 chr4 26457945 26458778 + 0 NA Intergenic Intergenic 15900 ENSMUSG00000082573.1 ENSMUSG00000082573 ENSMUST00000118958 Gm11903 processed_pseudogene Interval_155605 chr8 35104661 35104948 + 0 NA intron (ENSMUSG00000110130.1, intron 2 of 2) lincRNA-intron (ENSMUSG00000110130.1, intron 2 of 2) 10259 ENSMUSG00000110130.1 ENSMUSG00000110130 ENSMUST00000211383 Gm34419 lincRNA Interval_157668 chr8 72189211 72190143 + 0 NA promoter-TSS (ENSMUSG00000062007.13) protein_coding-promoter-TSS (ENSMUSG00000062007.13) -3766 ENSMUSG00000062007.13 ENSMUSG00000062007 ENSMUST00000165324 Hsh2d protein_coding Interval_61095 chr15 79202133 79203162 + 0 NA intron (ENSMUSG00000075555.12, intron 3 of 4) processed_transcript-intron (ENSMUSG00000075555.12, intron 3 of 4) -26744 ENSMUSG00000116121.1 ENSMUSG00000116121 ENSMUST00000053926 Gm49486 protein_coding Interval_110618 chr4 4782878 4783695 + 0 NA intron (ENSMUSG00000066324.2, intron 1 of 4) protein_coding-intron (ENSMUSG00000066324.2, intron 1 of 4) 10069 ENSMUSG00000066324.2 ENSMUSG00000066324 ENSMUST00000084949 Impad1 protein_coding Interval_140408 chr6 117916437 117918319 + 0 NA promoter-TSS (ENSMUSG00000042079.13) protein_coding-promoter-TSS (ENSMUSG00000042079.13) 344 ENSMUSG00000107608.1 ENSMUSG00000107608 ENSMUST00000203822 Gm43863 TEC Interval_85667 chr19 29500976 29502066 + 0 NA intron (ENSMUSG00000097855.8, intron 2 of 4) antisense-intron (ENSMUSG00000097855.8, intron 2 of 3) 19449 ENSMUSG00000097855.8 ENSMUSG00000097855 ENSMUST00000180737 A930007I19Rik antisense Interval_12862 chr10 6881742 6882808 + 0 NA intron (ENSMUSG00000000766.18, intron 4 of 5) protein_coding-intron (ENSMUSG00000000766.18, intron 3 of 4) 93466 ENSMUSG00000000766.18 ENSMUSG00000000766 ENSMUST00000148625 Oprm1 protein_coding Interval_78523 chr18 14294895 14295183 + 0 NA Intergenic Intergenic -13348 ENSMUSG00000117470.1 ENSMUSG00000117470 ENSMUST00000234483 Gm50095 processed_pseudogene Interval_64082 chr16 7419348 7420294 + 0 NA Intergenic Intergenic 226074 ENSMUSG00000008658.16 ENSMUSG00000008658 ENSMUST00000231031 Rbfox1 protein_coding Interval_95683 chr2 114105543 114105973 + 0 NA intron (ENSMUSG00000040383.16, intron 33 of 33) protein_coding-intron (ENSMUSG00000040383.16, intron 33 of 34) 44812 ENSMUSG00000098464.1 ENSMUSG00000098464 ENSMUST00000184524 Mir7002 miRNA Interval_72168 chr17 28386098 28386966 + 0 NA Intergenic Intergenic -30358 ENSMUSG00000037446.14 ENSMUSG00000037446 ENSMUST00000150341 Tulp1 protein_coding Interval_108583 chr3 129270176 129270607 + 0 NA exon (ENSMUSG00000028024.14, exon 20 of 20) protein_coding-exon (ENSMUSG00000028024.14, exon 20 of 20) -14878 ENSMUSG00000106417.1 ENSMUSG00000106417 ENSMUST00000198498 Gm42628 processed_pseudogene Interval_13986 chr10 25284506 25285238 + 0 NA intron (ENSMUSG00000039166.16, intron 2 of 2) protein_coding-intron (ENSMUSG00000039166.16, intron 2 of 7) -3020 ENSMUSG00000089048.1 ENSMUSG00000089048 ENSMUST00000158423 Gm26167 misc_RNA Interval_47972 chr13 94769445 94769715 + 0 NA Intergenic Intergenic -14987 ENSMUSG00000113547.1 ENSMUSG00000113547 ENSMUST00000223199 Gm46389 processed_pseudogene Interval_52156 chr14 37270923 37271569 + 0 NA Intergenic Intergenic 46377 ENSMUSG00000077306.1 ENSMUSG00000077306 ENSMUST00000104118 Gm22469 snoRNA Interval_49093 chr13 107909516 107909711 + 0 NA Intergenic Intergenic -19549 ENSMUSG00000032846.10 ENSMUSG00000032846 ENSMUST00000224719 Zswim6 protein_coding Interval_119663 chr4 139078476 139078997 + 0 NA Intergenic Intergenic 2912 ENSMUSG00000110296.1 ENSMUSG00000110296 ENSMUST00000210295 Gm45533 antisense Interval_34375 chr12 3690648 3691837 + 0 NA intron (ENSMUSG00000071454.13, intron 9 of 20) protein_coding-intron (ENSMUSG00000071454.13, intron 9 of 18) -7936 ENSMUSG00000077830.1 ENSMUSG00000077830 ENSMUST00000104640 Gm26050 miRNA Interval_174434 chrX 152272687 152273276 + 0 NA exon (ENSMUSG00000025332.14, exon 25 of 25) protein_coding-exon (ENSMUSG00000025332.14, exon 25 of 25) 3175 ENSMUSG00000025332.14 ENSMUSG00000025332 ENSMUST00000155793 Kdm5c protein_coding Interval_65231 chr16 20709017 20709822 + 0 NA promoter-TSS (ENSMUSG00000022843.17) protein_coding-promoter-TSS (ENSMUSG00000022843.17) 6693 ENSMUSG00000022843.17 ENSMUSG00000022843 ENSMUST00000132512 Clcn2 protein_coding Interval_21843 chr11 4689484 4691423 + 0 NA Intergenic Intergenic 13881 ENSMUSG00000059534.8 ENSMUSG00000059534 ENSMUST00000130236 Uqcr10 protein_coding Interval_88924 chr2 12955494 12955861 + 0 NA intron (ENSMUSG00000026730.12, intron 1 of 1) protein_coding-intron (ENSMUSG00000026730.12, intron 1 of 4) -22262 ENSMUSG00000026730.12 ENSMUSG00000026730 ENSMUST00000195521 Pter protein_coding Interval_28482 chr11 76278665 76279878 + 0 NA intron (ENSMUSG00000020844.6, intron 1 of 7) protein_coding-intron (ENSMUSG00000020844.6, intron 1 of 7) 30059 ENSMUSG00000038046.4 ENSMUSG00000038046 ENSMUST00000155526 Mrm3 protein_coding Interval_154487 chr8 18623099 18623678 + 0 NA intron (ENSMUSG00000039842.15, intron 4 of 11) protein_coding-intron (ENSMUSG00000039842.15, intron 4 of 13) -9279 ENSMUSG00000077287.1 ENSMUSG00000077287 ENSMUST00000104099 Gm25763 snoRNA Interval_4977 chr1 83150162 83150810 + 0 NA Intergenic Intergenic -7498 ENSMUSG00000101173.1 ENSMUSG00000101173 ENSMUST00000186994 Gm29519 processed_pseudogene Interval_102735 chr3 30678241 30679302 + 0 NA TTS (ENSMUSG00000074653.10) protein_coding-TTS (ENSMUSG00000074653.10) -7314 ENSMUSG00000086189.1 ENSMUSG00000086189 ENSMUST00000133653 Gm15462 antisense Interval_165005 chr9 43814161 43815039 + 0 NA intron (ENSMUSG00000032012.9, intron 5 of 7) protein_coding-intron (ENSMUSG00000032012.9, intron 5 of 7) 69956 ENSMUSG00000032012.9 ENSMUSG00000032012 ENSMUST00000180221 Nectin1 protein_coding Interval_25426 chr11 48156327 48156652 + 0 NA Intergenic Intergenic 133824 ENSMUSG00000081952.1 ENSMUSG00000081952 ENSMUST00000120545 Gm12178 processed_pseudogene Interval_108648 chr3 129763503 129763754 + 0 NA exon (ENSMUSG00000105960.1, exon 5 of 5) antisense-exon (ENSMUSG00000105960.1, exon 5 of 5) 9870 ENSMUSG00000105960.1 ENSMUSG00000105960 ENSMUST00000199846 6330410L21Rik antisense Interval_134411 chr6 28431369 28431712 + 0 NA exon (ENSMUSG00000029707.6, exon 3 of 7) protein_coding-exon (ENSMUSG00000029707.6, exon 3 of 7) -2424 ENSMUSG00000029707.6 ENSMUSG00000029707 ENSMUST00000147036 Fscn3 protein_coding Interval_5019 chr1 84283504 84285237 + 0 NA promoter-TSS (ENSMUSG00000045658.16) protein_coding-promoter-TSS (ENSMUSG00000045658.16) 253 ENSMUSG00000045658.16 ENSMUSG00000045658 ENSMUST00000187992 Pid1 protein_coding Interval_118127 chr4 129105066 129106563 + 0 NA intron (ENSMUSG00000028786.15, intron 1 of 5) protein_coding-intron (ENSMUSG00000028786.15, intron 1 of 4) -1055 ENSMUSG00000028786.15 ENSMUSG00000028786 ENSMUST00000148979 Tmem54 protein_coding Interval_171597 chr9 119451306 119451778 + 0 NA intron (ENSMUSG00000042787.15, intron 2 of 3) protein_coding-intron (ENSMUSG00000042787.15, intron 4 of 5) 6566 ENSMUSG00000042787.15 ENSMUSG00000042787 ENSMUST00000214462 Exog protein_coding Interval_150738 chr7 114024717 114024901 + 0 NA intron (ENSMUSG00000038156.16, intron 7 of 15) protein_coding-intron (ENSMUSG00000038156.16, intron 7 of 15) -62089 ENSMUSG00000110248.1 ENSMUSG00000110248 ENSMUST00000210417 Gm45615 antisense Interval_108218 chr3 122533476 122533693 + 0 NA Intergenic Intergenic 8097 ENSMUSG00000104773.1 ENSMUSG00000104773 ENSMUST00000196051 Mir7657 miRNA Interval_78111 chr18 8357681 8358343 + 0 NA Intergenic Intergenic -57117 ENSMUSG00000117484.1 ENSMUSG00000117484 ENSMUST00000234117 Gm5500 processed_pseudogene Interval_123146 chr5 30107065 30107384 + 0 NA intron (ENSMUSG00000044576.6, intron 1 of 5) protein_coding-intron (ENSMUSG00000044576.6, intron 1 of 5) -1138 ENSMUSG00000086815.4 ENSMUSG00000086815 ENSMUST00000127749 3110082J24Rik protein_coding Interval_132379 chr5 144598787 144599256 + 0 NA Intergenic Intergenic 53119 ENSMUSG00000059991.7 ENSMUSG00000059991 ENSMUST00000071782 Nptx2 protein_coding Interval_144513 chr7 25618904 25620100 + 0 NA promoter-TSS (ENSMUSG00000057229.11) protein_coding-promoter-TSS (ENSMUSG00000057229.11) 78 ENSMUSG00000057229.11 ENSMUSG00000057229 ENSMUST00000147472 Dmac2 protein_coding Interval_136032 chr6 50124037 50125624 + 0 NA intron (ENSMUSG00000038388.14, intron 1 of 9) protein_coding-intron (ENSMUSG00000038388.14, intron 1 of 13) 14552 ENSMUSG00000038388.14 ENSMUSG00000038388 ENSMUST00000167319 Mpp6 protein_coding Interval_44536 chr13 45834181 45834526 + 0 NA intron (ENSMUSG00000046876.16, intron 2 of 2) protein_coding-intron (ENSMUSG00000046876.16, intron 3 of 7) 84781 ENSMUSG00000114131.1 ENSMUSG00000114131 ENSMUST00000221126 Gm47460 antisense Interval_110195 chr3 154173396 154174413 + 0 NA intron (ENSMUSG00000028360.10, intron 2 of 21) protein_coding-intron (ENSMUSG00000028360.10, intron 2 of 21) 34807 ENSMUSG00000104622.1 ENSMUSG00000104622 ENSMUST00000199871 Gm42541 TEC Interval_113244 chr4 51848623 51849038 + 0 NA Intergenic Intergenic -36183 ENSMUSG00000064923.1 ENSMUSG00000064923 ENSMUST00000082989 Gm22042 snRNA Interval_7053 chr1 124044468 124046650 + 0 NA promoter-TSS (ENSMUSG00000036815.17) protein_coding-promoter-TSS (ENSMUSG00000036815.17) -215400 ENSMUSG00000102940.1 ENSMUSG00000102940 ENSMUST00000195556 Gm37551 TEC Interval_88575 chr2 6321804 6323500 + 0 NA promoter-TSS (ENSMUSG00000039046.15) protein_coding-promoter-TSS (ENSMUSG00000039046.15) 428 ENSMUSG00000118578.1 ENSMUSG00000118578 ENSMUST00000238876 AL845275.1 protein_coding Interval_157281 chr8 68986632 68987072 + 0 NA intron (ENSMUSG00000110594.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000110594.1, intron 1 of 1) 14831 ENSMUSG00000110594.1 ENSMUSG00000110594 ENSMUST00000212717 Gm33103 lincRNA Interval_27304 chr11 65787474 65788656 + 0 NA intron (ENSMUSG00000033352.11, intron 1 of 5) protein_coding-intron (ENSMUSG00000033352.11, intron 1 of 10) 221 ENSMUSG00000033352.11 ENSMUSG00000033352 ENSMUST00000138093 Map2k4 protein_coding Interval_51511 chr14 29238229 29238477 + 0 NA intron (ENSMUSG00000114760.1, intron 1 of 3) protein_coding-intron (ENSMUSG00000021991.9, intron 11 of 37) 3126 ENSMUSG00000114760.1 ENSMUSG00000114760 ENSMUST00000223940 Gm48006 antisense Interval_71580 chr17 24667311 24667997 + 0 NA Intergenic Intergenic -9197 ENSMUSG00000071230.7 ENSMUSG00000071230 ENSMUST00000095544 Npw protein_coding Interval_101161 chr2 178643494 178644428 + 0 NA Intergenic Intergenic 183331 ENSMUSG00000039155.15 ENSMUSG00000039155 ENSMUST00000176869 Cdh26 protein_coding Interval_2545 chr1 40115269 40116695 + 0 NA intron (ENSMUSG00000026073.13, intron 4 of 7) protein_coding-intron (ENSMUSG00000026073.13, intron 5 of 8) 27471 ENSMUSG00000102975.1 ENSMUSG00000102975 ENSMUST00000193969 Gm37347 TEC Interval_158234 chr8 80298727 80298935 + 0 NA Intergenic Intergenic 103632 ENSMUSG00000110294.1 ENSMUSG00000110294 ENSMUST00000211276 Gm45430 lincRNA Interval_45639 chr13 56428872 56429591 + 0 NA exon (ENSMUSG00000110477.1, exon 2 of 4) protein_coding-exon (ENSMUSG00000110477.1, exon 2 of 4) 2637 ENSMUSG00000110477.1 ENSMUSG00000110477 ENSMUST00000212844 Gm3045 protein_coding Interval_140629 chr6 120197911 120198668 + 0 NA intron (ENSMUSG00000041377.12, intron 2 of 3) protein_coding-intron (ENSMUSG00000041377.12, intron 2 of 3) -54539 ENSMUSG00000095086.1 ENSMUSG00000095086 ENSMUST00000180263 Gm25327 snRNA Interval_66397 chr16 33605751 33605998 + 0 NA intron (ENSMUSG00000035506.16, intron 1 of 8) protein_coding-intron (ENSMUSG00000035506.16, intron 5 of 12) -10516 ENSMUSG00000035506.16 ENSMUSG00000035506 ENSMUST00000149291 Slc12a8 protein_coding Interval_49910 chr13 118170914 118171308 + 0 NA Intergenic Intergenic 123791 ENSMUSG00000114713.1 ENSMUSG00000114713 ENSMUST00000225643 Gm9633 processed_pseudogene Interval_150241 chr7 108925331 108926063 + 0 NA exon (ENSMUSG00000049709.4, exon 3 of 3) protein_coding-exon (ENSMUSG00000049709.4, exon 3 of 3) 4481 ENSMUSG00000049709.4 ENSMUSG00000049709 ENSMUST00000055745 Nlrp10 protein_coding Interval_48211 chr13 97214371 97215867 + 0 NA Intergenic Intergenic -12144 ENSMUSG00000114583.1 ENSMUSG00000114583 ENSMUST00000225592 Gm48881 processed_pseudogene Interval_78368 chr18 12204321 12204807 + 0 NA intron (ENSMUSG00000024413.14, intron 11 of 24) protein_coding-intron (ENSMUSG00000024413.14, intron 11 of 24) -10294 ENSMUSG00000024413.14 ENSMUSG00000024413 ENSMUST00000144435 Npc1 protein_coding Interval_145466 chr7 34972845 34973745 + 0 NA intron (ENSMUSG00000063931.14, intron 2 of 5) protein_coding-intron (ENSMUSG00000063931.14, intron 9 of 14) 3785 ENSMUSG00000063931.14 ENSMUSG00000063931 ENSMUST00000160459 Pepd protein_coding Interval_111675 chr4 25712019 25712474 + 0 NA intron (ENSMUSG00000055373.8, intron 1 of 2) protein_coding-intron (ENSMUSG00000055373.8, intron 1 of 2) 87609 ENSMUSG00000055373.8 ENSMUSG00000055373 ENSMUST00000149875 Fut9 protein_coding Interval_131153 chr5 135459493 135460197 + 0 NA exon (ENSMUSG00000039959.13, exon 2 of 2) protein_coding-exon (ENSMUSG00000039959.13, exon 2 of 2) 6082 ENSMUSG00000039959.13 ENSMUSG00000039959 ENSMUST00000202044 Hip1 protein_coding Interval_9015 chr1 153095190 153096635 + 0 NA intron (ENSMUSG00000042751.14, intron 8 of 11) protein_coding-intron (ENSMUSG00000042751.14, intron 8 of 10) 2432 ENSMUSG00000042751.14 ENSMUSG00000042751 ENSMUST00000190960 Nmnat2 protein_coding Interval_170423 chr9 107864971 107866468 + 0 NA intron (ENSMUSG00000032582.14, intron 1 of 3) protein_coding-intron (ENSMUSG00000032582.14, intron 1 of 20) 7014 ENSMUSG00000032582.14 ENSMUSG00000032582 ENSMUST00000182445 Rbm6 protein_coding Interval_12200 chr1 190803005 190803561 + 0 NA intron (ENSMUSG00000089872.10, intron 1 of 5) protein_coding-intron (ENSMUSG00000089872.10, intron 10 of 14) 96434 ENSMUSG00000089872.10 ENSMUSG00000089872 ENSMUST00000159066 Rps6kc1 protein_coding Interval_168625 chr9 84423682 84423954 + 0 NA promoter-TSS (ENSMUSG00000099927.1) processed_pseudogene-promoter-TSS (ENSMUSG00000099927.1) -166 ENSMUSG00000099927.1 ENSMUSG00000099927 ENSMUST00000190511 Gm8226 processed_pseudogene Interval_59569 chr15 55422034 55422263 + 0 NA intron (ENSMUSG00000022371.16, intron 21 of 47) protein_coding-intron (ENSMUSG00000022371.16, intron 21 of 47) 16872 ENSMUSG00000101568.1 ENSMUSG00000101568 ENSMUST00000187158 1700040F17Rik antisense Interval_117279 chr4 121230882 121232719 + 0 NA Intergenic Intergenic -4327 ENSMUSG00000080706.1 ENSMUSG00000080706 ENSMUST00000120885 Gm12890 processed_pseudogene Interval_17013 chr10 70432923 70434187 + 0 NA Intergenic Intergenic -7151 ENSMUSG00000043259.15 ENSMUSG00000043259 ENSMUST00000062883 Fam13c protein_coding Interval_120296 chr4 145257791 145258386 + 0 NA Intergenic Intergenic -11218 ENSMUSG00000028599.10 ENSMUSG00000028599 ENSMUST00000143055 Tnfrsf1b protein_coding Interval_108774 chr3 131199714 131200422 + 0 NA intron (ENSMUSG00000027985.14, intron 7 of 8) protein_coding-intron (ENSMUSG00000027985.14, intron 8 of 11) 63283 ENSMUSG00000104612.1 ENSMUSG00000104612 ENSMUST00000200349 Gm42449 TEC Interval_115678 chr4 101971309 101972895 + 0 NA intron (ENSMUSG00000078626.2, intron 1 of 3) protein_coding-intron (ENSMUSG00000078626.2, intron 1 of 3) 8947 ENSMUSG00000078626.2 ENSMUSG00000078626 ENSMUST00000106916 Gm12790 protein_coding Interval_111843 chr4 31850869 31851276 + 0 NA Intergenic Intergenic -134595 ENSMUSG00000028284.13 ENSMUSG00000028284 ENSMUST00000131310 Map3k7 protein_coding Interval_125420 chr5 66973818 66974147 + 0 NA promoter-TSS (ENSMUSG00000037736.20) protein_coding-promoter-TSS (ENSMUSG00000037736.20) 4553 ENSMUSG00000107290.1 ENSMUSG00000107290 ENSMUST00000201848 Gm43282 TEC Interval_165416 chr9 47627846 47630370 + 0 NA intron (ENSMUSG00000032076.20, intron 1 of 8) protein_coding-intron (ENSMUSG00000032076.20, intron 1 of 8) 98756 ENSMUSG00000032076.20 ENSMUSG00000032076 ENSMUST00000034581 Cadm1 protein_coding Interval_100053 chr2 166760194 166760852 + 0 NA Intergenic Intergenic -8222 ENSMUSG00000088063.1 ENSMUSG00000088063 ENSMUST00000157438 Gm24477 snRNA Interval_91546 chr2 42652121 42653524 + 0 NA exon (ENSMUSG00000049252.17, exon 1 of 91) protein_coding-exon (ENSMUSG00000049252.17, exon 1 of 91) 104 ENSMUSG00000049252.17 ENSMUSG00000049252 ENSMUST00000142688 Lrp1b protein_coding Interval_8232 chr1 136634831 136635079 + 0 NA Intergenic Intergenic 10054 ENSMUSG00000041483.14 ENSMUSG00000041483 ENSMUST00000112046 Zfp281 protein_coding Interval_27686 chr11 69477302 69478138 + 0 NA exon (ENSMUSG00000005237.14, exon 31 of 85) protein_coding-exon (ENSMUSG00000005237.14, exon 31 of 85) 27715 ENSMUSG00000098432.1 ENSMUSG00000098432 ENSMUST00000184128 Gm27493 miRNA Interval_164529 chr9 37782380 37784207 + 0 NA Intergenic Intergenic 11436 ENSMUSG00000058628.4 ENSMUSG00000058628 ENSMUST00000080634 Olfr875 protein_coding Interval_172540 chrX 36206731 36207727 + 0 NA Intergenic Intergenic 5805 ENSMUSG00000083130.1 ENSMUSG00000083130 ENSMUST00000118672 Gm14560 processed_pseudogene Interval_144356 chr7 24653275 24653936 + 0 NA Intergenic Intergenic -7689 ENSMUSG00000108470.1 ENSMUSG00000108470 ENSMUST00000206756 Gm4598 lincRNA Interval_132418 chr5 144807933 144809590 + 0 NA intron (ENSMUSG00000045482.16, intron 5 of 28) protein_coding-intron (ENSMUSG00000045482.16, intron 30 of 69) 34336 ENSMUSG00000088685.1 ENSMUSG00000088685 ENSMUST00000158060 Gm23995 snoRNA Interval_101976 chr3 14149808 14150572 + 0 NA intron (ENSMUSG00000039717.16, intron 8 of 8) protein_coding-intron (ENSMUSG00000039717.16, intron 7 of 7) 117249 ENSMUSG00000089231.1 ENSMUSG00000089231 ENSMUST00000158606 Gm23112 snoRNA Interval_88009 chr19 57816165 57817047 + 0 NA intron (ENSMUSG00000054843.9, intron 26 of 28) protein_coding-intron (ENSMUSG00000054843.9, intron 26 of 28) 205572 ENSMUSG00000054843.9 ENSMUSG00000054843 ENSMUST00000077282 Atrnl1 protein_coding Interval_54176 chr14 65982064 65982661 + 0 NA TTS (ENSMUSG00000022037.15) protein_coding-TTS (ENSMUSG00000022037.15) 12644 ENSMUSG00000022037.15 ENSMUSG00000022037 ENSMUST00000152903 Clu protein_coding Interval_86730 chr19 43471848 43472988 + 0 NA exon (ENSMUSG00000025189.9, exon 6 of 11) protein_coding-exon (ENSMUSG00000025189.9, exon 6 of 11) 744 ENSMUSG00000025189.9 ENSMUSG00000025189 ENSMUST00000225191 Cnnm1 protein_coding Interval_99533 chr2 163006486 163006680 + 0 NA intron (ENSMUSG00000017868.16, intron 3 of 3) protein_coding-intron (ENSMUSG00000017868.16, intron 12 of 13) 8471 ENSMUSG00000017868.16 ENSMUSG00000017868 ENSMUST00000139053 Sgk2 protein_coding Interval_26554 chr11 58797216 58797532 + 0 NA intron (ENSMUSG00000049154.12, intron 1 of 2) protein_coding-intron (ENSMUSG00000049154.12, intron 1 of 2) 4586 ENSMUSG00000049154.12 ENSMUSG00000049154 ENSMUST00000060581 Fam183b protein_coding Interval_13742 chr10 21701229 21702275 + 0 NA intron (ENSMUSG00000056716.10, intron 2 of 2) lincRNA-intron (ENSMUSG00000056716.10, intron 2 of 2) 15341 ENSMUSG00000056716.10 ENSMUSG00000056716 ENSMUST00000071008 Gm5420 lincRNA Interval_171111 chr9 114583898 114585230 + 0 NA Intergenic Intergenic 17628 ENSMUSG00000087925.1 ENSMUSG00000087925 ENSMUST00000157300 Gm23232 snRNA Interval_70610 chr17 12306437 12306693 + 0 NA intron (ENSMUSG00000014426.9, intron 1 of 25) protein_coding-intron (ENSMUSG00000014426.9, intron 1 of 26) 5529 ENSMUSG00000077476.1 ENSMUSG00000077476 ENSMUST00000104288 Gm24794 snoRNA Interval_93546 chr2 73985439 73985991 + 0 NA Intergenic Intergenic -25046 ENSMUSG00000083072.2 ENSMUSG00000083072 ENSMUST00000119237 Gm13668 processed_pseudogene Interval_52718 chr14 48985648 48986197 + 0 NA Intergenic Intergenic 15914 ENSMUSG00000087754.1 ENSMUSG00000087754 ENSMUST00000157129 Gm23470 snRNA Interval_89852 chr2 25991468 25993053 + 0 NA Intergenic Intergenic 2923 ENSMUSG00000082357.1 ENSMUSG00000082357 ENSMUST00000118484 Gm13542 processed_pseudogene Interval_56351 chr14 117981493 117982047 + 0 NA Intergenic Intergenic -27923 ENSMUSG00000098648.1 ENSMUSG00000098648 ENSMUST00000183564 Mir6239 miRNA Interval_73986 chr17 45866523 45867984 + 0 NA Intergenic Intergenic 14199 ENSMUSG00000117085.1 ENSMUSG00000117085 ENSMUST00000233801 4930542M03Rik lincRNA Interval_43206 chr13 25187188 25187785 + 0 NA promoter-TSS (ENSMUSG00000035910.15) protein_coding-promoter-TSS (ENSMUSG00000035910.15) 32 ENSMUSG00000035910.15 ENSMUSG00000035910 ENSMUST00000160363 Dcdc2a protein_coding Interval_94031 chr2 81157647 81157903 + 0 NA Intergenic Intergenic -173586 ENSMUSG00000065261.1 ENSMUSG00000065261 ENSMUST00000083327 Gm23452 snRNA Interval_95342 chr2 106796147 106796333 + 0 NA intron (ENSMUSG00000016386.15, intron 4 of 6) protein_coding-intron (ENSMUSG00000016386.15, intron 4 of 6) -13095 ENSMUSG00000105886.1 ENSMUSG00000105886 ENSMUST00000200346 Gm22813 scaRNA Interval_166353 chr9 58544892 58545216 + 0 NA intron (ENSMUSG00000035914.11, intron 1 of 7) protein_coding-intron (ENSMUSG00000035914.11, intron 1 of 7) -4340 ENSMUSG00000035914.11 ENSMUSG00000035914 ENSMUST00000213722 Cd276 protein_coding Interval_94731 chr2 93863064 93863922 + 0 NA intron (ENSMUSG00000075023.11, intron 2 of 6) protein_coding-intron (ENSMUSG00000075023.11, intron 4 of 14) -6761 ENSMUSG00000075023.11 ENSMUSG00000075023 ENSMUST00000128995 Accsl protein_coding Interval_143222 chr7 4607403 4608206 + 0 NA Intergenic Intergenic -3831 ENSMUSG00000108392.1 ENSMUSG00000108392 ENSMUST00000206707 Gm9463 processed_pseudogene Interval_74870 chr17 56982269 56982481 + 0 NA promoter-TSS (ENSMUSG00000045019.4) protein_coding-promoter-TSS (ENSMUSG00000045019.4) -249 ENSMUSG00000045019.4 ENSMUSG00000045019 ENSMUST00000056113 Acer1 protein_coding Interval_43599 chr13 34010521 34010722 + 0 NA exon (ENSMUSG00000021408.15, exon 3 of 11) protein_coding-exon (ENSMUSG00000021408.15, exon 3 of 11) -2290 ENSMUSG00000090628.1 ENSMUSG00000090628 ENSMUST00000165849 Gm17083 processed_pseudogene Interval_52976 chr14 52521454 52521854 + 0 NA Intergenic Intergenic -12572 ENSMUSG00000106131.2 ENSMUSG00000106131 ENSMUST00000198892 Gm36382 processed_pseudogene Interval_71047 chr17 17408134 17409753 + 0 NA intron (ENSMUSG00000047786.12, intron 1 of 5) protein_coding-intron (ENSMUSG00000047786.12, intron 1 of 5) 3050 ENSMUSG00000097379.2 ENSMUSG00000097379 ENSMUST00000181390 Gm26873 antisense Interval_171155 chr9 114801516 114801859 + 0 NA intron (ENSMUSG00000041012.4, intron 1 of 1) protein_coding-intron (ENSMUSG00000041012.4, intron 1 of 3) 21587 ENSMUSG00000052724.7 ENSMUSG00000052724 ENSMUST00000150678 Gm9888 antisense Interval_152445 chr7 133058588 133059402 + 0 NA intron (ENSMUSG00000030970.16, intron 2 of 3) protein_coding-intron (ENSMUSG00000030970.16, intron 2 of 10) 61276 ENSMUSG00000110282.1 ENSMUSG00000110282 ENSMUST00000209529 B930086L07Rik TEC Interval_74105 chr17 46587886 46588109 + 0 NA intron (ENSMUSG00000023972.10, intron 5 of 19) protein_coding-intron (ENSMUSG00000023972.10, intron 5 of 19) -15047 ENSMUSG00000023972.10 ENSMUSG00000023972 ENSMUST00000044442 Ptk7 protein_coding Interval_6342 chr1 106076895 106078280 + 0 NA Intergenic Intergenic -1693 ENSMUSG00000102501.1 ENSMUSG00000102501 ENSMUST00000193577 Gm37372 TEC Interval_83194 chr18 82679076 82679355 + 0 NA intron (ENSMUSG00000041258.18, intron 3 of 31) protein_coding-intron (ENSMUSG00000041258.18, intron 3 of 29) 4353 ENSMUSG00000041258.18 ENSMUSG00000041258 ENSMUST00000225002 Zfp236 protein_coding Interval_68026 chr16 64068961 64069538 + 0 NA Intergenic Intergenic -114119 ENSMUSG00000116722.1 ENSMUSG00000116722 ENSMUST00000231945 Gm49627 processed_pseudogene Interval_30033 chr11 88809837 88810552 + 0 NA Intergenic Intergenic 31346 ENSMUSG00000018428.15 ENSMUSG00000018428 ENSMUST00000153787 Akap1 protein_coding Interval_47178 chr13 77148508 77148721 + 0 NA intron (ENSMUSG00000071252.6, intron 1 of 2) protein_coding-intron (ENSMUSG00000071252.6, intron 1 of 19) 13063 ENSMUSG00000071252.6 ENSMUSG00000071252 ENSMUST00000225760 2210408I21Rik protein_coding Interval_173045 chrX 68232884 68233982 + 0 NA Intergenic Intergenic 82884 ENSMUSG00000082202.3 ENSMUSG00000082202 ENSMUST00000119605 Gm4910 processed_pseudogene Interval_151418 chr7 122234815 122235008 + 0 NA Intergenic Intergenic 13338 ENSMUSG00000030865.4 ENSMUSG00000030865 ENSMUST00000160828 Chp2 protein_coding Interval_118605 chr4 132734512 132736027 + 0 NA intron (ENSMUSG00000028885.8, intron 7 of 7) protein_coding-intron (ENSMUSG00000028885.8, intron 7 of 7) -2741 ENSMUSG00000037752.4 ENSMUSG00000037752 ENSMUST00000143642 Xkr8 protein_coding Interval_116564 chr4 115728466 115729173 + 0 NA Intergenic Intergenic 21568 ENSMUSG00000081172.1 ENSMUSG00000081172 ENSMUST00000120013 Gm12849 processed_pseudogene Interval_174248 chrX 141475301 141475892 + 0 NA exon (ENSMUSG00000031274.16, exon 1 of 53) protein_coding-exon (ENSMUSG00000031274.16, exon 1 of 53) 40623 ENSMUSG00000082223.1 ENSMUSG00000082223 ENSMUST00000121943 Gm15079 processed_pseudogene Interval_136544 chr6 55420429 55420637 + 0 NA Intergenic Intergenic 15221 ENSMUSG00000108228.2 ENSMUSG00000108228 ENSMUST00000209841 6430584L05Rik lincRNA Interval_93418 chr2 72944787 72945495 + 0 NA intron (ENSMUSG00000027109.16, intron 3 of 4) protein_coding-intron (ENSMUSG00000027109.16, intron 4 of 5) 5846 ENSMUSG00000092851.1 ENSMUSG00000092851 ENSMUST00000175110 Gm25960 miRNA Interval_163245 chr9 19503640 19503978 + 0 NA TTS (ENSMUSG00000052625.8) protein_coding-TTS (ENSMUSG00000052625.8) 10514 ENSMUSG00000052625.8 ENSMUSG00000052625 ENSMUST00000064582 Olfr851 protein_coding Interval_21678 chr11 3638202 3638881 + 0 NA Intergenic Intergenic -5099 ENSMUSG00000079889.4 ENSMUSG00000079889 ENSMUST00000116005 Gm11951 processed_pseudogene Interval_172889 chrX 52796918 52798534 + 0 NA intron (ENSMUSG00000073207.1, intron 1 of 1) protein_coding-intron (ENSMUSG00000073207.1, intron 1 of 1) 6526 ENSMUSG00000073207.1 ENSMUSG00000073207 ENSMUST00000101588 Ccdc160 protein_coding Interval_109822 chr3 148295629 148295897 + 0 NA Intergenic Intergenic 58455 ENSMUSG00000077441.1 ENSMUSG00000077441 ENSMUST00000104253 Gm23131 snoRNA Interval_164098 chr9 31463309 31464717 + 0 NA exon (ENSMUSG00000041737.8, exon 1 of 1) protein_coding-exon (ENSMUSG00000041737.8, exon 1 of 1) 107 ENSMUSG00000111655.1 ENSMUSG00000111655 ENSMUST00000214381 4930434F21Rik bidirectional_promoter_lncRNA Interval_26180 chr11 54930151 54930760 + 0 NA intron (ENSMUSG00000020400.17, intron 6 of 7) protein_coding-intron (ENSMUSG00000020400.17, intron 7 of 17) -16980 ENSMUSG00000082180.1 ENSMUSG00000082180 ENSMUST00000118301 Gm12230 processed_pseudogene Interval_52345 chr14 45308138 45308349 + 0 NA promoter-TSS (ENSMUSG00000021831.9) protein_coding-promoter-TSS (ENSMUSG00000021831.9) -6504 ENSMUSG00000021831.9 ENSMUSG00000021831 ENSMUST00000228777 Ero1l protein_coding Interval_76580 chr17 81638159 81638387 + 0 NA intron (ENSMUSG00000054640.15, intron 2 of 11) protein_coding-intron (ENSMUSG00000054640.15, intron 1 of 9) 100104 ENSMUSG00000054640.15 ENSMUSG00000054640 ENSMUST00000234923 Slc8a1 protein_coding Interval_63896 chr16 4404797 4406278 + 0 NA intron (ENSMUSG00000005580.11, intron 3 of 11) protein_coding-intron (ENSMUSG00000005580.11, intron 1 of 9) 14961 ENSMUSG00000005580.11 ENSMUSG00000005580 ENSMUST00000005719 Adcy9 protein_coding Interval_109604 chr3 145026762 145027250 + 0 NA intron (ENSMUSG00000028255.6, intron 3 of 13) protein_coding-intron (ENSMUSG00000028255.6, intron 3 of 13) -8091 ENSMUSG00000028255.6 ENSMUSG00000028255 ENSMUST00000198832 Clca1 protein_coding Interval_70392 chr17 9702136 9702417 + 0 NA Intergenic Intergenic 24077 ENSMUSG00000117341.1 ENSMUSG00000117341 ENSMUST00000233960 Gm34684 lincRNA Interval_62686 chr15 96268298 96268662 + 0 NA intron (ENSMUSG00000097536.2, intron 1 of 6) lincRNA-intron (ENSMUSG00000097536.2, intron 1 of 6) -14493 ENSMUSG00000097619.8 ENSMUSG00000097619 ENSMUST00000229950 4833422M21Rik processed_transcript Interval_70421 chr17 10046875 10047532 + 0 NA Intergenic Intergenic 99366 ENSMUSG00000117206.1 ENSMUSG00000117206 ENSMUST00000233132 Gm49809 processed_pseudogene Interval_34995 chr12 16532693 16533934 + 0 NA Intergenic Intergenic 77653 ENSMUSG00000020593.16 ENSMUSG00000020593 ENSMUST00000221146 Lpin1 protein_coding Interval_33678 chr11 117874584 117876156 + 0 NA intron (ENSMUSG00000085434.1, intron 3 of 3) antisense-intron (ENSMUSG00000085434.1, intron 3 of 3) -1889 ENSMUSG00000017713.9 ENSMUSG00000017713 ENSMUST00000138354 Tha1 protein_coding Interval_173456 chrX 94030090 94030693 + 0 NA intron (ENSMUSG00000087640.1, intron 1 of 1) antisense-intron (ENSMUSG00000087640.1, intron 1 of 1) 1537 ENSMUSG00000087640.1 ENSMUSG00000087640 ENSMUST00000139695 Gm14798 antisense Interval_45943 chr13 59515126 59515638 + 0 NA intron (ENSMUSG00000021557.15, intron 8 of 24) protein_coding-intron (ENSMUSG00000021557.15, intron 9 of 25) -42184 ENSMUSG00000114526.1 ENSMUSG00000114526 ENSMUST00000225984 A930015P04Rik TEC Interval_136813 chr6 60828146 60829696 + 0 NA promoter-TSS (ENSMUSG00000025889.13) protein_coding-promoter-TSS (ENSMUSG00000025889.13) -1365 ENSMUSG00000025889.13 ENSMUSG00000025889 ENSMUST00000203177 Snca protein_coding Interval_39996 chr12 100358112 100358524 + 0 NA intron (ENSMUSG00000033530.8, intron 15 of 20) protein_coding-intron (ENSMUSG00000033530.8, intron 15 of 19) 11434 ENSMUSG00000113917.1 ENSMUSG00000113917 ENSMUST00000220812 Gm48382 TEC Interval_53924 chr14 63451081 63451927 + 0 NA intron (ENSMUSG00000035095.11, intron 2 of 3) protein_coding-intron (ENSMUSG00000035095.11, intron 2 of 3) 15095 ENSMUSG00000035095.11 ENSMUSG00000035095 ENSMUST00000128313 Fam167a protein_coding Interval_24313 chr11 32299810 32301172 + 0 NA exon (ENSMUSG00000020295.1, exon 2 of 3) protein_coding-exon (ENSMUSG00000020295.1, exon 2 of 3) 422 ENSMUSG00000020295.1 ENSMUSG00000020295 ENSMUST00000020535 Hbq1a protein_coding Interval_160161 chr8 106828939 106829204 + 0 NA intron (ENSMUSG00000041949.6, intron 17 of 17) protein_coding-intron (ENSMUSG00000041949.6, intron 17 of 17) -41765 ENSMUSG00000031910.14 ENSMUSG00000031910 ENSMUST00000175987 Has3 protein_coding Interval_174174 chrX 137131036 137131486 + 0 NA exon (ENSMUSG00000081349.1, exon 1 of 1) processed_pseudogene-exon (ENSMUSG00000081349.1, exon 1 of 1) 345 ENSMUSG00000081349.1 ENSMUSG00000081349 ENSMUST00000119048 Gm15041 processed_pseudogene Interval_32329 chr11 106998671 107000304 + 0 NA promoter-TSS (ENSMUSG00000018362.14) protein_coding-promoter-TSS (ENSMUSG00000018362.14) 5253 ENSMUSG00000083356.1 ENSMUSG00000083356 ENSMUST00000119530 Gm11708 processed_pseudogene Interval_59224 chr15 49114914 49115175 + 0 NA Intergenic Intergenic 15920 ENSMUSG00000114976.1 ENSMUSG00000114976 ENSMUST00000227927 Gm2333 processed_pseudogene Interval_84224 chr19 8864304 8864549 + 0 NA Intergenic Intergenic -7167 ENSMUSG00000071655.12 ENSMUSG00000071655 ENSMUST00000096255 Ubxn1 protein_coding Interval_151110 chr7 118593507 118595544 + 0 NA intron (ENSMUSG00000109284.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000109284.1, intron 1 of 2) 2182 ENSMUSG00000109284.1 ENSMUSG00000109284 ENSMUST00000207147 B230311B06Rik lincRNA Interval_132238 chr5 143527003 143528677 + 0 NA exon (ENSMUSG00000001847.14, exon 1 of 6) protein_coding-exon (ENSMUSG00000001847.14, exon 1 of 6) 2180 ENSMUSG00000105198.1 ENSMUSG00000105198 ENSMUST00000198550 Gm42502 TEC Interval_122397 chr5 21969517 21969892 + 0 NA intron (ENSMUSG00000042453.14, intron 38 of 64) protein_coding-intron (ENSMUSG00000042453.14, intron 38 of 63) -11718 ENSMUSG00000105766.1 ENSMUSG00000105766 ENSMUST00000198176 Gm19666 TEC Interval_97152 chr2 131805395 131805910 + 0 NA Intergenic Intergenic 39943 ENSMUSG00000081422.1 ENSMUSG00000081422 ENSMUST00000119484 Gm14282 transcribed_processed_pseudogene Interval_31222 chr11 98984945 98985460 + 0 NA Intergenic Intergenic -2186 ENSMUSG00000047197.1 ENSMUSG00000047197 ENSMUST00000062931 Gjd3 protein_coding Interval_73544 chr17 40186882 40187830 + 0 NA promoter-TSS (ENSMUSG00000117307.1) processed_pseudogene-promoter-TSS (ENSMUSG00000117307.1) -319 ENSMUSG00000117307.1 ENSMUSG00000117307 ENSMUST00000232831 Gm49837 processed_pseudogene Interval_172439 chrX 20335657 20335871 + 0 NA Intergenic Intergenic -3535 ENSMUSG00000087415.4 ENSMUSG00000087415 ENSMUST00000117894 Gm14529 processed_pseudogene Interval_62892 chr15 97761512 97762101 + 0 NA promoter-TSS (ENSMUSG00000022469.17) protein_coding-promoter-TSS (ENSMUSG00000022469.17) 1398 ENSMUSG00000086601.1 ENSMUSG00000086601 ENSMUST00000149373 Rapgef3os1 antisense Interval_142320 chr6 140632057 140632473 + 0 NA intron (ENSMUSG00000030232.18, intron 1 of 8) protein_coding-intron (ENSMUSG00000030232.18, intron 1 of 7) -4473 ENSMUSG00000030232.18 ENSMUSG00000030232 ENSMUST00000160772 Aebp2 protein_coding Interval_47231 chr13 78552207 78552506 + 0 NA intron (ENSMUSG00000114522.1, intron 3 of 3) lincRNA-intron (ENSMUSG00000114522.1, intron 3 of 3) 69002 ENSMUSG00000114522.1 ENSMUSG00000114522 ENSMUST00000224561 Gm32067 lincRNA Interval_80941 chr18 50777709 50778249 + 0 NA Intergenic Intergenic -176560 ENSMUSG00000048875.3 ENSMUSG00000048875 ENSMUST00000056460 Pudp protein_coding Interval_84889 chr19 18627747 18629375 + 0 NA intron (ENSMUSG00000024725.13, intron 1 of 10) protein_coding-intron (ENSMUSG00000024725.13, intron 1 of 9) 3228 ENSMUSG00000024725.13 ENSMUSG00000024725 ENSMUST00000138860 Ostf1 protein_coding Interval_112988 chr4 46637102 46637787 + 0 NA intron (ENSMUSG00000039813.14, intron 3 of 3) protein_coding-intron (ENSMUSG00000039813.14, intron 3 of 12) 12765 ENSMUSG00000039813.14 ENSMUSG00000039813 ENSMUST00000107750 Tbc1d2 protein_coding Interval_129654 chr5 121544977 121546764 + 0 NA promoter-TSS (ENSMUSG00000029454.15) protein_coding-promoter-TSS (ENSMUSG00000029454.15) -388 ENSMUSG00000072647.6 ENSMUSG00000072647 ENSMUST00000200170 Adam1a protein_coding Interval_93938 chr2 79601363 79601980 + 0 NA Intergenic Intergenic -37511 ENSMUSG00000027007.16 ENSMUSG00000027007 ENSMUST00000133266 Itprid2 protein_coding Interval_162035 chr8 124613375 124614194 + 0 NA intron (ENSMUSG00000031981.7, intron 1 of 2) protein_coding-intron (ENSMUSG00000031981.7, intron 15 of 19) 344 ENSMUSG00000031981.7 ENSMUSG00000031981 ENSMUST00000133583 Capn9 protein_coding Interval_95573 chr2 112423655 112424179 + 0 NA Intergenic Intergenic -31080 ENSMUSG00000055943.5 ENSMUSG00000055943 ENSMUST00000069747 Emc7 protein_coding Interval_35657 chr12 26903408 26904826 + 0 NA Intergenic Intergenic -69244 ENSMUSG00000113218.1 ENSMUSG00000113218 ENSMUST00000222026 4933409F18Rik lincRNA Interval_75042 chr17 62051557 62052187 + 0 NA Intergenic Intergenic 179497 ENSMUSG00000117160.1 ENSMUSG00000117160 ENSMUST00000232834 Gm49859 processed_pseudogene Interval_46323 chr13 63946278 63946528 + 0 NA exon (ENSMUSG00000113340.1, exon 1 of 1) processed_pseudogene-exon (ENSMUSG00000113340.1, exon 1 of 1) 118 ENSMUSG00000113340.1 ENSMUSG00000113340 ENSMUST00000220900 Gm7695 processed_pseudogene Interval_124851 chr5 56642189 56642369 + 0 NA Intergenic Intergenic -93811 ENSMUSG00000088734.1 ENSMUSG00000088734 ENSMUST00000158109 Gm23896 snoRNA Interval_34420 chr12 4004881 4005367 + 0 NA intron (ENSMUSG00000020658.10, intron 1 of 2) protein_coding-intron (ENSMUSG00000020658.10, intron 1 of 22) 20459 ENSMUSG00000112517.1 ENSMUSG00000112517 ENSMUST00000220181 Gm48001 antisense Interval_20033 chr10 112310341 112311092 + 0 NA intron (ENSMUSG00000035681.7, intron 2 of 4) protein_coding-intron (ENSMUSG00000035681.7, intron 2 of 4) -79575 ENSMUSG00000112564.1 ENSMUSG00000112564 ENSMUST00000219794 Gm47419 antisense Interval_21031 chr10 124176261 124176466 + 0 NA Intergenic Intergenic -42499 ENSMUSG00000112250.1 ENSMUSG00000112250 ENSMUST00000220441 Gm47837 processed_pseudogene Interval_7243 chr1 128191216 128191736 + 0 NA intron (ENSMUSG00000056211.13, intron 17 of 26) protein_coding-intron (ENSMUSG00000056211.13, intron 17 of 26) -10885 ENSMUSG00000065520.2 ENSMUSG00000065520 ENSMUST00000083586 Mir128-1 miRNA Interval_22739 chr11 14237017 14238150 + 0 NA Intergenic Intergenic -58542 ENSMUSG00000085452.1 ENSMUSG00000085452 ENSMUST00000126260 4930554G24Rik lincRNA Interval_131191 chr5 135700127 135700378 + 0 NA intron (ENSMUSG00000005514.14, intron 1 of 14) protein_coding-intron (ENSMUSG00000005514.14, intron 1 of 15) -1233 ENSMUSG00000080972.1 ENSMUSG00000080972 ENSMUST00000122167 Gm16061 processed_pseudogene Interval_92179 chr2 55435725 55437605 + 0 NA promoter-TSS (ENSMUSG00000026824.11) protein_coding-promoter-TSS (ENSMUSG00000026824.11) -491 ENSMUSG00000026824.11 ENSMUSG00000026824 ENSMUST00000112632 Kcnj3 protein_coding Interval_159063 chr8 89269428 89270632 + 0 NA Intergenic Intergenic -82470 ENSMUSG00000069962.3 ENSMUSG00000069962 ENSMUST00000093326 Gm5356 processed_pseudogene Interval_147132 chr7 63697355 63698151 + 0 NA intron (ENSMUSG00000033510.14, intron 3 of 10) protein_coding-intron (ENSMUSG00000033510.14, intron 6 of 13) 46938 ENSMUSG00000033510.14 ENSMUSG00000033510 ENSMUST00000177511 Otud7a protein_coding Interval_98884 chr2 155764723 155765623 + 0 NA Intergenic Intergenic 14023 ENSMUSG00000027611.12 ENSMUSG00000027611 ENSMUST00000143493 Procr protein_coding Interval_54076 chr14 65040521 65041076 + 0 NA TTS (ENSMUSG00000021975.9) protein_coding-TTS (ENSMUSG00000021975.9) 57307 ENSMUSG00000021978.9 ENSMUSG00000021978 ENSMUST00000223989 Extl3 protein_coding Interval_36250 chr12 40287760 40288027 + 0 NA Intergenic Intergenic 41085 ENSMUSG00000055917.15 ENSMUSG00000055917 ENSMUST00000221847 Zfp277 protein_coding Interval_174646 chrX 161997398 161997761 + 0 NA intron (ENSMUSG00000059493.13, intron 1 of 8) protein_coding-intron (ENSMUSG00000059493.13, intron 1 of 7) -71878 ENSMUSG00000065828.1 ENSMUSG00000065828 ENSMUST00000083894 Gm26317 snRNA Interval_19862 chr10 110634416 110634813 + 0 NA exon (ENSMUSG00000112872.1, exon 1 of 1) processed_pseudogene-exon (ENSMUSG00000112872.1, exon 1 of 1) 189 ENSMUSG00000112872.1 ENSMUSG00000112872 ENSMUST00000218721 Gm47058 processed_pseudogene Interval_112683 chr4 44042732 44043440 + 0 NA intron (ENSMUSG00000028479.18, intron 4 of 8) protein_coding-intron (ENSMUSG00000028479.18, intron 7 of 11) 12211 ENSMUSG00000028479.18 ENSMUSG00000028479 ENSMUST00000140724 Gne protein_coding Interval_65571 chr16 23439342 23439554 + 0 NA Intergenic Intergenic 10315 ENSMUSG00000033383.6 ENSMUSG00000033383 ENSMUST00000038730 Rtp1 protein_coding Interval_85162 chr19 23229607 23229919 + 0 NA intron (ENSMUSG00000024943.9, intron 15 of 23) protein_coding-intron (ENSMUSG00000024943.9, intron 15 of 24) 42836 ENSMUSG00000024943.9 ENSMUSG00000024943 ENSMUST00000224723 Smc5 protein_coding Interval_48359 chr13 98502985 98503240 + 0 NA Intergenic Intergenic -11111 ENSMUSG00000092116.1 ENSMUSG00000092116 ENSMUST00000170205 Gm10320 protein_coding Interval_134055 chr6 18214999 18215440 + 0 NA intron (ENSMUSG00000041301.15, intron 4 of 25) protein_coding-intron (ENSMUSG00000041301.15, intron 4 of 26) -40005 ENSMUSG00000041301.15 ENSMUSG00000041301 ENSMUST00000140532 Cftr protein_coding Interval_49699 chr13 114070011 114070498 + 0 NA intron (ENSMUSG00000042348.10, intron 5 of 5) protein_coding-intron (ENSMUSG00000042348.10, intron 4 of 4) 50162 ENSMUSG00000114696.1 ENSMUSG00000114696 ENSMUST00000223997 Gm47479 TEC Interval_95058 chr2 103599525 103601073 + 0 NA intron (ENSMUSG00000032724.5, intron 1 of 16) protein_coding-intron (ENSMUSG00000032724.5, intron 1 of 16) 53040 ENSMUSG00000081687.1 ENSMUSG00000081687 ENSMUST00000118456 Gm13996 processed_pseudogene Interval_121643 chr5 4194968 4195403 + 0 NA intron (ENSMUSG00000053178.5, intron 1 of 1) protein_coding-intron (ENSMUSG00000053178.5, intron 1 of 1) 2818 ENSMUSG00000053178.5 ENSMUSG00000053178 ENSMUST00000177258 Mterf1b protein_coding Interval_57220 chr15 7898649 7899581 + 0 NA intron (ENSMUSG00000039828.7, intron 13 of 17) protein_coding-intron (ENSMUSG00000039828.7, intron 13 of 17) -75960 ENSMUSG00000116090.1 ENSMUSG00000116090 ENSMUST00000229131 Rpl19-ps6 processed_pseudogene Interval_155022 chr8 25753598 25754873 + 0 NA promoter-TSS (ENSMUSG00000061313.8) protein_coding-promoter-TSS (ENSMUSG00000061313.8) -245 ENSMUSG00000091514.2 ENSMUSG00000091514 ENSMUST00000167899 Gm17484 lincRNA Interval_137177 chr6 69254449 69255246 + 0 NA Intergenic Intergenic -11159 ENSMUSG00000073028.4 ENSMUSG00000073028 ENSMUST00000196201 Igkv4-71 IG_V_gene Interval_16398 chr10 62730929 62731358 + 0 NA Intergenic Intergenic -5342 ENSMUSG00000036923.12 ENSMUSG00000036923 ENSMUST00000126979 Stox1 protein_coding Interval_49665 chr13 113864536 113866250 + 0 NA intron (ENSMUSG00000042348.10, intron 1 of 3) protein_coding-intron (ENSMUSG00000042348.10, intron 1 of 4) 70800 ENSMUSG00000042348.10 ENSMUSG00000042348 ENSMUST00000224068 Arl15 protein_coding Interval_99832 chr2 165182618 165183034 + 0 NA intron (ENSMUSG00000053166.14, intron 1 of 11) protein_coding-intron (ENSMUSG00000053166.14, intron 1 of 11) -1367 ENSMUSG00000053166.14 ENSMUSG00000053166 ENSMUST00000138643 Cdh22 protein_coding Interval_86127 chr19 36903499 36905291 + 0 NA Intergenic Intergenic 15204 ENSMUSG00000047632.11 ENSMUSG00000047632 ENSMUST00000057337 Fgfbp3 protein_coding Interval_156018 chr8 42333403 42333680 + 0 NA Intergenic Intergenic 86630 ENSMUSG00000053038.8 ENSMUSG00000053038 ENSMUST00000065243 Gm6180 processed_pseudogene Interval_40317 chr12 103553453 103553706 + 0 NA intron (ENSMUSG00000021209.12, intron 2 of 25) protein_coding-intron (ENSMUSG00000021209.12, intron 2 of 24) -27819 ENSMUSG00000021209.12 ENSMUSG00000021209 ENSMUST00000190151 Ppp4r4 protein_coding Interval_13727 chr10 21465221 21466171 + 0 NA Intergenic Intergenic -20060 ENSMUSG00000112738.1 ENSMUSG00000112738 ENSMUST00000219604 Gm48386 processed_pseudogene Interval_98227 chr2 150197627 150197999 + 0 NA Intergenic Intergenic 7420 ENSMUSG00000079009.8 ENSMUSG00000079009 ENSMUST00000109929 Gm14139 protein_coding Interval_54541 chr14 70584018 70584379 + 0 NA exon (ENSMUSG00000022095.9, exon 17 of 17) protein_coding-exon (ENSMUSG00000022095.9, exon 17 of 17) 6106 ENSMUSG00000045211.5 ENSMUSG00000045211 ENSMUST00000228768 Nudt18 protein_coding Interval_56496 chr14 119214636 119214837 + 0 NA intron (ENSMUSG00000053465.6, intron 1 of 1) protein_coding-intron (ENSMUSG00000053465.6, intron 1 of 1) -63688 ENSMUSG00000115684.1 ENSMUSG00000115684 ENSMUST00000227446 Gm6087 processed_pseudogene Interval_156008 chr8 41931294 41931468 + 0 NA intron (ENSMUSG00000102046.1, intron 3 of 5) lincRNA-intron (ENSMUSG00000102046.1, intron 3 of 5) 7861 ENSMUSG00000108069.1 ENSMUSG00000108069 ENSMUST00000203513 Hspd1-ps1 processed_pseudogene Interval_126846 chr5 94356445 94357112 + 0 NA intron (ENSMUSG00000073497.6, intron 1 of 2) protein_coding-intron (ENSMUSG00000073497.6, intron 1 of 2) -20539 ENSMUSG00000073497.6 ENSMUSG00000073497 ENSMUST00000202253 AA792892 protein_coding Interval_64620 chr16 13710524 13710817 + 0 NA Intergenic Intergenic -19166 ENSMUSG00000086550.2 ENSMUSG00000086550 ENSMUST00000141172 Pla2g10os antisense Interval_117975 chr4 127415939 127416149 + 0 NA Intergenic Intergenic -7246 ENSMUSG00000079998.2 ENSMUSG00000079998 ENSMUST00000116114 Gm12947 processed_pseudogene Interval_46633 chr13 67791098 67792593 + 0 NA intron (ENSMUSG00000090659.9, intron 3 of 3) protein_coding-intron (ENSMUSG00000090659.9, intron 3 of 3) 12129 ENSMUSG00000090659.9 ENSMUSG00000090659 ENSMUST00000180507 Zfp493 protein_coding Interval_29305 chr11 82812915 82813245 + 0 NA intron (ENSMUSG00000020696.18, intron 2 of 2) protein_coding-intron (ENSMUSG00000020696.18, intron 2 of 5) 31887 ENSMUSG00000020697.16 ENSMUSG00000020697 ENSMUST00000172837 Lig3 protein_coding Interval_134868 chr6 32901691 32901920 + 0 NA intron (ENSMUSG00000053768.13, intron 4 of 7) protein_coding-intron (ENSMUSG00000053768.13, intron 4 of 7) -4734 ENSMUSG00000053768.13 ENSMUSG00000053768 ENSMUST00000115091 Chchd3 protein_coding Interval_81652 chr18 62864858 62865479 + 0 NA Intergenic Intergenic 56933 ENSMUSG00000117671.1 ENSMUSG00000117671 ENSMUST00000237856 Gm50128 bidirectional_promoter_lncRNA Interval_16914 chr10 69858414 69859257 + 0 NA TTS (ENSMUSG00000069601.14) protein_coding-TTS (ENSMUSG00000069601.14) -292474 ENSMUSG00000112729.1 ENSMUSG00000112729 ENSMUST00000220152 Gm46231 processed_pseudogene Interval_137097 chr6 67318348 67318945 + 0 NA intron (ENSMUSG00000018341.12, intron 2 of 9) protein_coding-intron (ENSMUSG00000018341.12, intron 8 of 15) 21048 ENSMUSG00000018341.12 ENSMUSG00000018341 ENSMUST00000018485 Il12rb2 protein_coding Interval_144393 chr7 24883723 24885076 + 0 NA promoter-TSS (ENSMUSG00000040952.16) protein_coding-promoter-TSS (ENSMUSG00000040952.16) -414 ENSMUSG00000040952.16 ENSMUSG00000040952 ENSMUST00000146004 Rps19 protein_coding Interval_162809 chr9 9325394 9326377 + 0 NA Intergenic Intergenic 24494 ENSMUSG00000088076.1 ENSMUSG00000088076 ENSMUST00000157451 Gm22815 snRNA Interval_148703 chr7 84343320 84343518 + 0 NA TTS (ENSMUSG00000015709.9) protein_coding-TTS (ENSMUSG00000015709.9) 5324 ENSMUSG00000109341.1 ENSMUSG00000109341 ENSMUST00000207512 Gm30873 antisense Interval_74208 chr17 47475648 47476157 + 0 NA Intergenic Intergenic 26370 ENSMUSG00000023980.7 ENSMUSG00000023980 ENSMUST00000233675 Taf8 protein_coding Interval_91789 chr2 49578795 49580089 + 0 NA Intergenic Intergenic 50567 ENSMUSG00000069495.12 ENSMUSG00000069495 ENSMUST00000152485 Epc2 protein_coding Interval_146384 chr7 45621489 45622009 + 0 NA promoter-TSS (ENSMUSG00000064158.6) protein_coding-promoter-TSS (ENSMUSG00000064158.6) -2644 ENSMUSG00000064158.6 ENSMUSG00000064158 ENSMUST00000209590 Izumo1 protein_coding Interval_63347 chr15 100473836 100474775 + 0 NA promoter-TSS (ENSMUSG00000037353.9) protein_coding-promoter-TSS (ENSMUSG00000037353.9) 1898 ENSMUSG00000037353.9 ENSMUSG00000037353 ENSMUST00000229372 Letmd1 protein_coding Interval_73119 chr17 34917240 34918260 + 0 NA promoter-TSS (ENSMUSG00000007034.15) protein_coding-promoter-TSS (ENSMUSG00000007034.15) 3284 ENSMUSG00000007034.15 ENSMUSG00000007034 ENSMUST00000169230 Slc44a4 protein_coding Interval_136814 chr6 60879533 60880320 + 0 NA Intergenic Intergenic 3037 ENSMUSG00000108262.1 ENSMUSG00000108262 ENSMUST00000203860 Gm43867 processed_pseudogene Interval_34832 chr12 12380752 12381078 + 0 NA TTS (ENSMUSG00000020589.17) protein_coding-TTS (ENSMUSG00000020589.17) 11700 ENSMUSG00000114136.1 ENSMUSG00000114136 ENSMUST00000220545 4921511I17Rik antisense Interval_28236 chr11 74589492 74591186 + 0 NA promoter-TSS (ENSMUSG00000038807.19) protein_coding-promoter-TSS (ENSMUSG00000038807.19) 20576 ENSMUSG00000038807.19 ENSMUSG00000038807 ENSMUST00000145524 Rap1gap2 protein_coding Interval_8393 chr1 138785959 138786319 + 0 NA Intergenic Intergenic 56315 ENSMUSG00000019230.14 ENSMUSG00000019230 ENSMUST00000194557 Lhx9 protein_coding Interval_89818 chr2 25643684 25643917 + 0 NA promoter-TSS (ENSMUSG00000118473.1) unitary_pseudogene-promoter-TSS (ENSMUSG00000118473.1) -297 ENSMUSG00000118473.1 ENSMUSG00000118473 ENSMUST00000238611 Lcn15 unitary_pseudogene Interval_42569 chr13 15542459 15542736 + 0 NA intron (ENSMUSG00000021318.15, intron 2 of 9) protein_coding-intron (ENSMUSG00000021318.15, intron 2 of 14) -78861 ENSMUSG00000097806.3 ENSMUSG00000097806 ENSMUST00000193256 Gm6556 processed_transcript Interval_97341 chr2 135006912 135008188 + 0 NA intron (ENSMUSG00000051177.16, intron 3 of 6) protein_coding-intron (ENSMUSG00000051177.16, intron 3 of 31) 203601 ENSMUSG00000082399.1 ENSMUSG00000082399 ENSMUST00000118248 Gm14036 processed_pseudogene Interval_158067 chr8 78514761 78515796 + 0 NA intron (ENSMUSG00000031684.11, intron 1 of 9) protein_coding-intron (ENSMUSG00000031684.11, intron 1 of 11) 5932 ENSMUSG00000031684.11 ENSMUSG00000031684 ENSMUST00000210132 Slc10a7 protein_coding Interval_151445 chr7 122528252 122528490 + 0 NA intron (ENSMUSG00000052889.11, intron 7 of 17) protein_coding-intron (ENSMUSG00000052889.11, intron 7 of 16) -43951 ENSMUSG00000087520.2 ENSMUSG00000087520 ENSMUST00000140453 Gm14389 processed_pseudogene Interval_174511 chrX 154713914 154714408 + 0 NA Intergenic Intergenic 2903 ENSMUSG00000064818.1 ENSMUSG00000064818 ENSMUST00000082884 Gm22359 snRNA Interval_170174 chr9 105907463 105907689 + 0 NA intron (ENSMUSG00000091345.9, intron 20 of 40) protein_coding-intron (ENSMUSG00000091345.9, intron 20 of 39) 53067 ENSMUSG00000091345.9 ENSMUSG00000091345 ENSMUST00000189127 Col6a5 protein_coding Interval_146099 chr7 43882220 43884029 + 0 NA intron (ENSMUSG00000006948.7, intron 2 of 5) protein_coding-intron (ENSMUSG00000006948.7, intron 2 of 5) 1964 ENSMUSG00000006948.7 ENSMUSG00000006948 ENSMUST00000007161 Klk4 protein_coding Interval_105542 chr3 87535382 87536966 + 0 NA exon (ENSMUSG00000003382.18, exon 5 of 5) protein_coding-exon (ENSMUSG00000003382.18, exon 5 of 5) 10596 ENSMUSG00000003382.18 ENSMUSG00000003382 ENSMUST00000152010 Etv3 protein_coding Interval_5030 chr1 84418126 84419014 + 0 NA intron (ENSMUSG00000036766.12, intron 9 of 12) protein_coding-intron (ENSMUSG00000036766.12, intron 9 of 12) -23171 ENSMUSG00000104396.1 ENSMUSG00000104396 ENSMUST00000191700 Gm37959 TEC Interval_67571 chr16 51014314 51014627 + 0 NA Intergenic Intergenic -36660 ENSMUSG00000116706.1 ENSMUSG00000116706 ENSMUST00000231893 Gm32431 lincRNA Interval_101149 chr2 178512708 178514131 + 0 NA Intergenic Intergenic 52789 ENSMUSG00000039155.15 ENSMUSG00000039155 ENSMUST00000176869 Cdh26 protein_coding Interval_100571 chr2 170180897 170181659 + 0 NA Intergenic Intergenic -33175 ENSMUSG00000052056.14 ENSMUSG00000052056 ENSMUST00000149318 Zfp217 protein_coding Interval_155230 chr8 28392646 28393473 + 0 NA Intergenic Intergenic -127617 ENSMUSG00000110322.1 ENSMUSG00000110322 ENSMUST00000211297 Gm8110 lincRNA Interval_161253 chr8 119258422 119259103 + 0 NA intron (ENSMUSG00000031841.19, intron 10 of 13) protein_coding-intron (ENSMUSG00000031841.19, intron 10 of 13) -85754 ENSMUSG00000031839.7 ENSMUSG00000031839 ENSMUST00000212795 Hsbp1 protein_coding Interval_147663 chr7 71023523 71023895 + 0 NA intron (ENSMUSG00000109532.1, intron 3 of 3) lincRNA-intron (ENSMUSG00000109532.1, intron 3 of 3) -73338 ENSMUSG00000109161.1 ENSMUSG00000109161 ENSMUST00000209158 Gm39033 lincRNA Interval_69671 chr16 95193960 95194583 + 0 NA intron (ENSMUSG00000116720.1, intron 3 of 4) antisense-intron (ENSMUSG00000116720.1, intron 3 of 4) -22761 ENSMUSG00000116601.1 ENSMUSG00000116601 ENSMUST00000231527 Gm49642 TEC Interval_95903 chr2 118230942 118231682 + 0 NA intron (ENSMUSG00000027344.14, intron 9 of 11) protein_coding-intron (ENSMUSG00000027344.14, intron 9 of 10) 17470 ENSMUSG00000093368.1 ENSMUSG00000093368 ENSMUST00000175627 Gm22800 miRNA Interval_129194 chr5 118113274 118114090 + 0 NA exon (ENSMUSG00000032867.8, exon 5 of 11) protein_coding-exon (ENSMUSG00000032867.8, exon 5 of 11) 35212 ENSMUSG00000088293.1 ENSMUSG00000088293 ENSMUST00000157668 Gm26411 snRNA Interval_35029 chr12 16752550 16754560 + 0 NA intron (ENSMUSG00000036523.16, intron 1 of 3) protein_coding-intron (ENSMUSG00000036523.16, intron 1 of 32) 13668 ENSMUSG00000105567.1 ENSMUSG00000105567 ENSMUST00000199946 Gm44305 miRNA Interval_163759 chr9 25375850 25376061 + 0 NA Intergenic Intergenic 26457 ENSMUSG00000111558.1 ENSMUSG00000111558 ENSMUST00000216734 Gm18891 processed_pseudogene Interval_159894 chr8 104805850 104806193 + 0 NA Intergenic Intergenic 10784 ENSMUSG00000069925.6 ENSMUSG00000069925 ENSMUST00000212453 4932416K20Rik lincRNA Interval_140583 chr6 119830131 119830415 + 0 NA intron (ENSMUSG00000030172.15, intron 1 of 20) protein_coding-intron (ENSMUSG00000030172.15, intron 1 of 5) -62647 ENSMUSG00000080719.1 ENSMUSG00000080719 ENSMUST00000121192 Gm15532 processed_pseudogene Interval_71998 chr17 27505557 27505768 + 0 NA intron (ENSMUSG00000063239.17, intron 1 of 9) protein_coding-intron (ENSMUSG00000063239.17, intron 1 of 10) 8064 ENSMUSG00000063239.17 ENSMUSG00000063239 ENSMUST00000147865 Grm4 protein_coding Interval_96991 chr2 130302475 130303531 + 0 NA intron (ENSMUSG00000053552.14, intron 1 of 16) protein_coding-intron (ENSMUSG00000053552.14, intron 1 of 16) 7064 ENSMUSG00000053552.14 ENSMUSG00000053552 ENSMUST00000110287 Ebf4 protein_coding Interval_50233 chr14 10907851 10908634 + 0 NA intron (ENSMUSG00000060579.13, intron 2 of 9) protein_coding-intron (ENSMUSG00000060579.13, intron 2 of 9) -127794 ENSMUSG00000114305.1 ENSMUSG00000114305 ENSMUST00000225136 Gm48437 TEC Interval_73228 chr17 35680330 35680982 + 0 NA TTS (ENSMUSG00000003534.17) protein_coding-TTS (ENSMUSG00000003534.17) -11896 ENSMUSG00000001524.14 ENSMUSG00000001524 ENSMUST00000159852 Gtf2h4 protein_coding Interval_54420 chr14 69199883 69200198 + 0 NA Intergenic Intergenic 9402 ENSMUSG00000022061.8 ENSMUSG00000022061 ENSMUST00000022646 Nkx3-1 protein_coding Interval_92558 chr2 60648928 60650491 + 0 NA intron (ENSMUSG00000026971.15, intron 8 of 14) protein_coding-intron (ENSMUSG00000026971.15, intron 10 of 17) 24017 ENSMUSG00000026971.15 ENSMUSG00000026971 ENSMUST00000142696 Itgb6 protein_coding Interval_145783 chr7 38253409 38253913 + 0 NA Intergenic Intergenic 17666 ENSMUSG00000030423.7 ENSMUSG00000030423 ENSMUST00000206045 Pop4 protein_coding Interval_6283 chr1 105327220 105327501 + 0 NA intron (ENSMUSG00000047496.6, intron 1 of 1) protein_coding-intron (ENSMUSG00000047496.6, intron 2 of 2) 6239 ENSMUSG00000099582.1 ENSMUSG00000099582 ENSMUST00000191422 Gm29014 processed_pseudogene Interval_110252 chr3 154896614 154896993 + 0 NA intron (ENSMUSG00000040086.13, intron 17 of 22) protein_coding-intron (ENSMUSG00000040086.13, intron 17 of 24) -24493 ENSMUSG00000102238.1 ENSMUSG00000102238 ENSMUST00000195610 Gm37890 TEC Interval_68234 chr16 70147760 70148125 + 0 NA Intergenic Intergenic -3670 ENSMUSG00000116531.1 ENSMUSG00000116531 ENSMUST00000232445 Gm19082 processed_pseudogene Interval_85007 chr19 21290086 21290743 + 0 NA Intergenic Intergenic 18136 ENSMUSG00000024750.11 ENSMUSG00000024750 ENSMUST00000133175 Zfand5 protein_coding Interval_133124 chr5 150023617 150024454 + 0 NA intron (ENSMUSG00000053368.13, intron 1 of 16) protein_coding-intron (ENSMUSG00000053368.13, intron 1 of 17) 1556 ENSMUSG00000107360.1 ENSMUSG00000107360 ENSMUST00000200982 Gm42558 sense_intronic Interval_31928 chr11 103916229 103917076 + 0 NA exon (ENSMUSG00000034187.18, exon 5 of 21) protein_coding-exon (ENSMUSG00000034187.18, exon 5 of 21) -36409 ENSMUSG00000092540.1 ENSMUSG00000092540 ENSMUST00000172606 Gm8738 processed_pseudogene Interval_151197 chr7 119440070 119440288 + 0 NA Intergenic Intergenic 19093 ENSMUSG00000030954.11 ENSMUSG00000030954 ENSMUST00000239424 Gp2 protein_coding Interval_136197 chr6 51972996 51973214 + 0 NA intron (ENSMUSG00000059182.7, intron 4 of 12) protein_coding-intron (ENSMUSG00000059182.7, intron 4 of 12) -39496 ENSMUSG00000108244.1 ENSMUSG00000108244 ENSMUST00000203453 Gm44077 lincRNA Interval_80119 chr18 37730874 37731722 + 0 NA exon (ENSMUSG00000103749.1, exon 1 of 4) protein_coding-exon (ENSMUSG00000103749.1, exon 1 of 4) 244 ENSMUSG00000103749.1 ENSMUSG00000103749 ENSMUST00000193006 Pcdhgb5 protein_coding Interval_23826 chr11 26722544 26722805 + 0 NA Intergenic Intergenic 9769 ENSMUSG00000082038.1 ENSMUSG00000082038 ENSMUST00000121968 Gm12071 processed_pseudogene Interval_64680 chr16 14131142 14132162 + 0 NA intron (ENSMUSG00000060657.8, intron 15 of 26) protein_coding-intron (ENSMUSG00000060657.8, intron 15 of 26) -3021 ENSMUSG00000098652.1 ENSMUSG00000098652 ENSMUST00000183739 Gm27671 miRNA Interval_11959 chr1 187661914 187662599 + 0 NA TTS (ENSMUSG00000103401.1) TEC-TTS (ENSMUSG00000103401.1) 1105 ENSMUSG00000103401.1 ENSMUSG00000103401 ENSMUST00000195116 Gm37929 TEC Interval_118228 chr4 129631517 129631875 + 0 NA TTS (ENSMUSG00000053841.15) protein_coding-TTS (ENSMUSG00000053841.15) -7852 ENSMUSG00000028795.15 ENSMUSG00000028795 ENSMUST00000152290 Ccdc28b protein_coding Interval_140701 chr6 120665199 120667361 + 0 NA promoter-TSS (ENSMUSG00000071226.11) protein_coding-promoter-TSS (ENSMUSG00000071226.11) -69476 ENSMUSG00000071226.11 ENSMUSG00000071226 ENSMUST00000143563 Cecr2 protein_coding Interval_31695 chr11 102295265 102297751 + 0 NA exon (ENSMUSG00000059995.12, exon 1 of 13) protein_coding-exon (ENSMUSG00000059995.12, exon 1 of 13) -3064 ENSMUSG00000059995.12 ENSMUSG00000059995 ENSMUST00000107132 Atxn7l3 protein_coding Interval_125357 chr5 66406141 66408929 + 0 NA intron (ENSMUSG00000029207.16, intron 5 of 5) protein_coding-intron (ENSMUSG00000029207.16, intron 5 of 17) 24591 ENSMUSG00000106732.1 ENSMUSG00000106732 ENSMUST00000202492 Gm43792 TEC Interval_10798 chr1 175039785 175039980 + 0 NA Intergenic Intergenic 46298 ENSMUSG00000026527.13 ENSMUSG00000026527 ENSMUST00000193798 Rgs7 protein_coding Interval_128098 chr5 110859189 110859712 + 0 NA intron (ENSMUSG00000029521.7, intron 6 of 13) protein_coding-intron (ENSMUSG00000029521.7, intron 7 of 14) -17153 ENSMUSG00000104602.1 ENSMUSG00000104602 ENSMUST00000198807 Gm42779 processed_pseudogene Interval_45327 chr13 54455733 54455965 + 0 NA Intergenic Intergenic 12939 ENSMUSG00000025872.5 ENSMUSG00000025872 ENSMUST00000135404 Thoc3 protein_coding Interval_83718 chr19 3929500 3930934 + 0 NA promoter-TSS (ENSMUSG00000024885.9) protein_coding-promoter-TSS (ENSMUSG00000024885.9) -490 ENSMUSG00000024885.9 ENSMUSG00000024885 ENSMUST00000237391 Aldh3b1 protein_coding Interval_83023 chr18 80560596 80560790 + 0 NA Intergenic Intergenic -16678 ENSMUSG00000118319.1 ENSMUSG00000118319 ENSMUST00000237325 Gm2176 transcribed_processed_pseudogene Interval_117108 chr4 119587895 119588485 + 0 NA exon (ENSMUSG00000032998.16, exon 7 of 7) protein_coding-exon (ENSMUSG00000032998.16, exon 7 of 7) -34132 ENSMUSG00000081678.1 ENSMUSG00000081678 ENSMUST00000119396 Gm12959 processed_pseudogene Interval_162158 chr8 125560892 125561529 + 0 NA intron (ENSMUSG00000001995.9, intron 1 of 22) protein_coding-intron (ENSMUSG00000001995.9, intron 1 of 21) 8598 ENSMUSG00000001995.9 ENSMUSG00000001995 ENSMUST00000212604 Sipa1l2 protein_coding Interval_100337 chr2 168472842 168473528 + 0 NA Intergenic Intergenic -54611 ENSMUSG00000082239.1 ENSMUSG00000082239 ENSMUST00000119539 Gm14234 processed_pseudogene Interval_121984 chr5 12995279 12995496 + 0 NA Intergenic Intergenic 48047 ENSMUSG00000096810.1 ENSMUSG00000096810 ENSMUST00000179228 Gm10481 processed_pseudogene Interval_124316 chr5 43875095 43875698 + 0 NA promoter-TSS (ENSMUSG00000086479.2) sense_intronic-promoter-TSS (ENSMUSG00000086479.2) -634 ENSMUSG00000086479.2 ENSMUSG00000086479 ENSMUST00000123363 Gm16014 sense_intronic Interval_106319 chr3 95337602 95339444 + 0 NA TTS (ENSMUSG00000015697.14) protein_coding-TTS (ENSMUSG00000015697.14) -14261 ENSMUSG00000105860.1 ENSMUSG00000105860 ENSMUST00000199960 Gm42578 processed_pseudogene Interval_27366 chr11 67001941 67002148 + 0 NA promoter-TSS (ENSMUSG00000085926.1) processed_transcript-promoter-TSS (ENSMUSG00000085926.1) -42 ENSMUSG00000085926.1 ENSMUSG00000085926 ENSMUST00000138819 Gm12299 processed_transcript Interval_77128 chr17 86759080 86759687 + 0 NA intron (ENSMUSG00000024140.10, intron 1 of 15) protein_coding-intron (ENSMUSG00000024140.10, intron 1 of 15) -13887 ENSMUSG00000117538.1 ENSMUSG00000117538 ENSMUST00000234482 Gm50008 TEC Interval_88123 chr19 59389020 59389818 + 0 NA promoter-TSS (ENSMUSG00000110210.1) lincRNA-promoter-TSS (ENSMUSG00000110210.1) -365 ENSMUSG00000110210.1 ENSMUSG00000110210 ENSMUST00000211358 Gm33756 lincRNA Interval_174669 chrX 162770342 162771370 + 0 NA intron (ENSMUSG00000031353.13, intron 4 of 5) protein_coding-intron (ENSMUSG00000031353.13, intron 4 of 11) -3722 ENSMUSG00000031353.13 ENSMUSG00000031353 ENSMUST00000143681 Rbbp7 protein_coding Interval_167659 chr9 71643760 71644045 + 0 NA intron (ENSMUSG00000032232.14, intron 2 of 3) protein_coding-intron (ENSMUSG00000032232.14, intron 13 of 18) -12793 ENSMUSG00000032232.14 ENSMUSG00000032232 ENSMUST00000146567 Cgnl1 protein_coding Interval_135304 chr6 38185784 38186223 + 0 NA intron (ENSMUSG00000063455.16, intron 4 of 19) protein_coding-intron (ENSMUSG00000063455.16, intron 4 of 19) 67620 ENSMUSG00000087924.1 ENSMUSG00000087924 ENSMUST00000157299 Gm23231 snRNA Interval_4499 chr1 74587435 74588569 + 0 NA promoter-TSS (ENSMUSG00000026135.17) protein_coding-promoter-TSS (ENSMUSG00000026135.17) 244 ENSMUSG00000026135.17 ENSMUSG00000026135 ENSMUST00000147011 Zfp142 protein_coding Interval_41331 chr12 112893883 112894795 + 0 NA Intergenic Intergenic 16029 ENSMUSG00000002799.6 ENSMUSG00000002799 ENSMUST00000222402 Jag2 protein_coding Interval_137599 chr6 74515626 74516258 + 0 NA Intergenic Intergenic -10778 ENSMUSG00000096282.1 ENSMUSG00000096282 ENSMUST00000179186 Gm22254 miRNA Interval_108393 chr3 126580709 126580903 + 0 NA Intergenic Intergenic -16400 ENSMUSG00000053819.16 ENSMUSG00000053819 ENSMUST00000198637 Camk2d protein_coding Interval_23970 chr11 29005241 29005471 + 0 NA Intergenic Intergenic 48632 ENSMUSG00000081695.1 ENSMUSG00000081695 ENSMUST00000121462 Rpsa-ps5 processed_pseudogene Interval_68241 chr16 70568368 70569069 + 0 NA intron (ENSMUSG00000022707.16, intron 16 of 17) protein_coding-intron (ENSMUSG00000022707.16, intron 16 of 16) -47707 ENSMUSG00000116792.1 ENSMUSG00000116792 ENSMUST00000231858 D16Ertd519e lincRNA Interval_111772 chr4 28330889 28331425 + 0 NA Intergenic Intergenic -22626 ENSMUSG00000082703.1 ENSMUSG00000082703 ENSMUST00000118918 Gm11907 processed_pseudogene Interval_85727 chr19 30114897 30116533 + 0 NA intron (ENSMUSG00000024827.10, intron 18 of 18) protein_coding-intron (ENSMUSG00000024827.10, intron 18 of 24) 29516 ENSMUSG00000024827.10 ENSMUSG00000024827 ENSMUST00000235203 Gldc protein_coding Interval_63140 chr15 99316282 99317785 + 0 NA TTS (ENSMUSG00000023007.15) protein_coding-TTS (ENSMUSG00000023007.15) 7130 ENSMUSG00000023007.15 ENSMUSG00000023007 ENSMUST00000126955 Prpf40b protein_coding Interval_134077 chr6 18856007 18857347 + 0 NA TTS (ENSMUSG00000044155.11) protein_coding-TTS (ENSMUSG00000044155.11) 8009 ENSMUSG00000044155.11 ENSMUSG00000044155 ENSMUST00000201141 Lsm8 protein_coding Interval_139812 chr6 108976332 108976687 + 0 NA Intergenic Intergenic 94505 ENSMUSG00000107751.1 ENSMUSG00000107751 ENSMUST00000203838 Gm6749 processed_pseudogene Interval_67870 chr16 58435208 58435966 + 0 NA intron (ENSMUSG00000035107.13, intron 3 of 15) protein_coding-intron (ENSMUSG00000035107.13, intron 3 of 15) -24612 ENSMUSG00000035107.13 ENSMUSG00000035107 ENSMUST00000135415 Dcbld2 protein_coding Interval_1532 chr1 24943169 24944049 + 0 NA Intergenic Intergenic 21549 ENSMUSG00000100483.1 ENSMUSG00000100483 ENSMUST00000189477 Gm28237 lincRNA Interval_57988 chr15 25872438 25872683 + 0 NA intron (ENSMUSG00000022270.16, intron 1 of 8) protein_coding-intron (ENSMUSG00000022270.16, intron 1 of 8) -31949 ENSMUSG00000115593.1 ENSMUSG00000115593 ENSMUST00000228649 Gm4824 processed_pseudogene Interval_18437 chr10 85942094 85942346 + 0 NA intron (ENSMUSG00000001783.3, intron 10 of 11) protein_coding-intron (ENSMUSG00000001783.3, intron 10 of 11) -12740 ENSMUSG00000112613.1 ENSMUSG00000112613 ENSMUST00000218274 Gm48175 processed_pseudogene Interval_29585 chr11 85177956 85178189 + 0 NA intron (ENSMUSG00000018479.12, intron 3 of 4) protein_coding-intron (ENSMUSG00000018479.12, intron 4 of 5) 7668 ENSMUSG00000018479.12 ENSMUSG00000018479 ENSMUST00000018623 1700125H20Rik protein_coding Interval_7460 chr1 131526380 131528365 + 0 NA promoter-TSS (ENSMUSG00000055184.4) protein_coding-promoter-TSS (ENSMUSG00000055184.4) -531 ENSMUSG00000055184.4 ENSMUSG00000055184 ENSMUST00000068613 Fam72a protein_coding Interval_127784 chr5 107802907 107803192 + 0 NA intron (ENSMUSG00000011831.16, intron 11 of 17) protein_coding-intron (ENSMUSG00000011831.16, intron 11 of 17) 4658 ENSMUSG00000106288.1 ENSMUSG00000106288 ENSMUST00000198605 Gm43593 TEC Interval_14226 chr10 29177959 29178228 + 0 NA intron (ENSMUSG00000038916.7, intron 3 of 4) protein_coding-intron (ENSMUSG00000038916.7, intron 4 of 6) -20861 ENSMUSG00000110723.1 ENSMUSG00000110723 ENSMUST00000217011 Gm49353 protein_coding Interval_123824 chr5 35770157 35771872 + 0 NA intron (ENSMUSG00000029095.17, intron 1 of 21) protein_coding-intron (ENSMUSG00000029095.17, intron 1 of 19) -31027 ENSMUSG00000036553.16 ENSMUSG00000036553 ENSMUST00000154118 Sh3tc1 protein_coding Interval_116179 chr4 108415973 108416600 + 0 NA Intergenic Intergenic -9562 ENSMUSG00000028597.11 ENSMUSG00000028597 ENSMUST00000184609 Gpx7 protein_coding Interval_127670 chr5 106463747 106464520 + 0 NA Intergenic Intergenic -5967 ENSMUSG00000034384.11 ENSMUSG00000034384 ENSMUST00000086795 Barhl2 protein_coding Interval_173670 chrX 101695867 101696171 + 0 NA Intergenic Intergenic -4169 ENSMUSG00000082729.3 ENSMUSG00000082729 ENSMUST00000121259 Gm14845 processed_pseudogene Interval_160419 chr8 109348204 109348672 + 0 NA Intergenic Intergenic -7574 ENSMUSG00000110528.1 ENSMUSG00000110528 ENSMUST00000211890 Gm1943 processed_pseudogene Interval_131408 chr5 136981014 136981326 + 0 NA TTS (ENSMUSG00000059518.14) protein_coding-TTS (ENSMUSG00000059518.14) 6851 ENSMUSG00000059518.14 ENSMUSG00000059518 ENSMUST00000137272 Znhit1 protein_coding Interval_164588 chr9 39537040 39537606 + 0 NA TTS (ENSMUSG00000077427.1) snoRNA-TTS (ENSMUSG00000077427.1) 629 ENSMUSG00000077427.1 ENSMUSG00000077427 ENSMUST00000104239 Gm24278 snoRNA Interval_63985 chr16 5006936 5008197 + 0 NA promoter-TSS (ENSMUSG00000096215.8) protein_coding-promoter-TSS (ENSMUSG00000096215.8) 214 ENSMUSG00000096215.8 ENSMUSG00000096215 ENSMUST00000183631 Smim22 protein_coding Interval_68680 chr16 84696117 84696484 + 0 NA TTS (ENSMUSG00000116674.1) lincRNA-TTS (ENSMUSG00000116674.1) -6867 ENSMUSG00000097418.7 ENSMUSG00000097418 ENSMUST00000180991 Mir155hg lincRNA Interval_154584 chr8 21143123 21143584 + 0 NA Intergenic Intergenic 8711 ENSMUSG00000074444.4 ENSMUSG00000074444 ENSMUST00000098898 Defa30 protein_coding Interval_17294 chr10 75667103 75668302 + 0 NA exon (ENSMUSG00000020196.10, exon 1 of 4) protein_coding-exon (ENSMUSG00000020196.10, exon 1 of 4) -23694 ENSMUSG00000006342.15 ENSMUSG00000006342 ENSMUST00000077610 Susd2 protein_coding Interval_71863 chr17 26596052 26597464 + 0 NA intron (ENSMUSG00000001576.15, intron 1 of 9) protein_coding-intron (ENSMUSG00000001576.15, intron 1 of 8) -5466 ENSMUSG00000001576.15 ENSMUSG00000001576 ENSMUST00000236163 Ergic1 protein_coding Interval_94165 chr2 84788654 84790701 + 0 NA Intergenic Intergenic -14549 ENSMUSG00000023224.12 ENSMUSG00000023224 ENSMUST00000131456 Serping1 protein_coding Interval_68774 chr16 86088033 86088433 + 0 NA Intergenic Intergenic 62443 ENSMUSG00000116556.1 ENSMUSG00000116556 ENSMUST00000231250 1700007H22Rik lincRNA Interval_77104 chr17 86595419 86596283 + 0 NA intron (ENSMUSG00000045038.14, intron 11 of 14) protein_coding-intron (ENSMUSG00000045038.14, intron 12 of 15) 89645 ENSMUSG00000117568.1 ENSMUSG00000117568 ENSMUST00000234033 Gm18832 processed_pseudogene Interval_92229 chr2 57204858 57206589 + 0 NA Intergenic Intergenic 8519 ENSMUSG00000080812.1 ENSMUSG00000080812 ENSMUST00000117970 Gm13526 processed_pseudogene Interval_157092 chr8 65087676 65089135 + 0 NA intron (ENSMUSG00000074300.4, intron 2 of 2) protein_coding-intron (ENSMUSG00000074300.4, intron 2 of 2) 4141 ENSMUSG00000109711.1 ENSMUSG00000109711 ENSMUST00000209586 Gm45445 processed_pseudogene Interval_18617 chr10 88513656 88515742 + 0 NA Intergenic Intergenic -38259 ENSMUSG00000060002.14 ENSMUSG00000060002 ENSMUST00000073783 Chpt1 protein_coding Interval_78253 chr18 10819439 10819742 + 0 NA TTS (ENSMUSG00000024294.14) protein_coding-TTS (ENSMUSG00000024294.14) -33707 ENSMUSG00000095438.1 ENSMUSG00000095438 ENSMUST00000179771 Mir133a-1hg antisense Interval_66344 chr16 33274804 33275061 + 0 NA intron (ENSMUSG00000022808.5, intron 5 of 12) protein_coding-intron (ENSMUSG00000022808.5, intron 5 of 13) 23490 ENSMUSG00000022808.5 ENSMUSG00000022808 ENSMUST00000231242 Snx4 protein_coding Interval_135469 chr6 39472401 39473159 + 0 NA intron (ENSMUSG00000038456.9, intron 5 of 10) protein_coding-intron (ENSMUSG00000038456.9, intron 13 of 18) 13676 ENSMUSG00000038456.9 ENSMUSG00000038456 ENSMUST00000154149 Dennd2a protein_coding Interval_18305 chr10 84740686 84741134 + 0 NA Intergenic Intergenic -21328 ENSMUSG00000020037.15 ENSMUSG00000020037 ENSMUST00000095388 Rfx4 protein_coding Interval_78105 chr18 8153676 8153975 + 0 NA Intergenic Intergenic -26754 ENSMUSG00000117490.1 ENSMUSG00000117490 ENSMUST00000234300 Gm35031 lincRNA Interval_169664 chr9 99943713 99943973 + 0 NA TTS (ENSMUSG00000077495.1) snoRNA-TTS (ENSMUSG00000077495.1) 134 ENSMUSG00000077495.1 ENSMUSG00000077495 ENSMUST00000104307 Gm23594 snoRNA Interval_19632 chr10 106417254 106417545 + 0 NA Intergenic Intergenic -26998 ENSMUSG00000112066.1 ENSMUSG00000112066 ENSMUST00000217782 Gm48380 processed_pseudogene Interval_17393 chr10 76326599 76326982 + 0 NA intron (ENSMUSG00000020231.15, intron 2 of 14) protein_coding-intron (ENSMUSG00000020231.15, intron 2 of 37) 18442 ENSMUSG00000020231.15 ENSMUSG00000020231 ENSMUST00000162766 Dip2a protein_coding Interval_66865 chr16 38184878 38185092 + 0 NA intron (ENSMUSG00000022812.14, intron 4 of 5) protein_coding-intron (ENSMUSG00000022812.14, intron 4 of 10) 22606 ENSMUSG00000098908.1 ENSMUSG00000098908 ENSMUST00000184976 Gm27931 snoRNA Interval_82333 chr18 70906954 70907528 + 0 NA TTS (ENSMUSG00000118271.1) processed_pseudogene-TTS (ENSMUSG00000118271.1) 410 ENSMUSG00000118271.1 ENSMUSG00000118271 ENSMUST00000236972 Gm50262 processed_pseudogene Interval_5363 chr1 87900963 87901295 + 0 NA TTS (ENSMUSG00000103591.1) TEC-TTS (ENSMUSG00000103591.1) 3589 ENSMUSG00000103591.1 ENSMUSG00000103591 ENSMUST00000195720 Gm38365 TEC Interval_114617 chr4 83243878 83244429 + 0 NA intron (ENSMUSG00000038172.14, intron 11 of 19) protein_coding-intron (ENSMUSG00000038172.14, intron 11 of 15) 41016 ENSMUSG00000038172.14 ENSMUSG00000038172 ENSMUST00000148811 Ttc39b protein_coding Interval_116848 chr4 117672238 117672426 + 0 NA intron (ENSMUSG00000033423.16, intron 7 of 7) protein_coding-intron (ENSMUSG00000033423.16, intron 8 of 8) 9921 ENSMUSG00000009640.11 ENSMUSG00000009640 ENSMUST00000127750 Dmap1 protein_coding Interval_143252 chr7 4770075 4771443 + 0 NA intron (ENSMUSG00000092518.9, intron 1 of 10) protein_coding-intron (ENSMUSG00000092518.9, intron 1 of 10) 543 ENSMUSG00000092518.9 ENSMUSG00000092518 ENSMUST00000174409 Fam71e2 protein_coding Interval_145747 chr7 38006611 38006837 + 0 NA intron (ENSMUSG00000030421.9, intron 1 of 10) protein_coding-intron (ENSMUSG00000030421.9, intron 1 of 10) 16827 ENSMUSG00000030421.9 ENSMUSG00000030421 ENSMUST00000206169 Uri1 protein_coding Interval_140646 chr6 120293818 120295468 + 0 NA promoter-TSS (ENSMUSG00000041372.10) protein_coding-promoter-TSS (ENSMUSG00000041372.10) -84 ENSMUSG00000041372.10 ENSMUSG00000041372 ENSMUST00000212457 B4galnt3 protein_coding Interval_55751 chr14 99578682 99579461 + 0 NA Intergenic Intergenic 40945 ENSMUSG00000115550.1 ENSMUSG00000115550 ENSMUST00000226602 Gm49225 lincRNA Interval_109143 chr3 136729919 136730409 + 0 NA intron (ENSMUSG00000028161.17, intron 1 of 12) protein_coding-intron (ENSMUSG00000028161.17, intron 1 of 13) 28953 ENSMUSG00000106596.1 ENSMUSG00000106596 ENSMUST00000200507 Gm42822 TEC Interval_148228 chr7 79987786 79987989 + 0 NA Intergenic Intergenic 38700 ENSMUSG00000077059.1 ENSMUSG00000077059 ENSMUST00000103871 Gm24541 miRNA Interval_172290 chrX 12467435 12468488 + 0 NA Intergenic Intergenic -10731 ENSMUSG00000081461.3 ENSMUSG00000081461 ENSMUST00000119630 Rpl30-ps11 processed_pseudogene Interval_149770 chr7 101363987 101364185 + 0 NA intron (ENSMUSG00000032812.18, intron 2 of 3) protein_coding-intron (ENSMUSG00000032812.18, intron 1 of 33) -9647 ENSMUSG00000109656.1 ENSMUSG00000109656 ENSMUST00000210076 Gm45548 TEC Interval_94350 chr2 90441104 90441344 + 0 NA intron (ENSMUSG00000025314.16, intron 21 of 23) protein_coding-intron (ENSMUSG00000025314.16, intron 19 of 21) -38026 ENSMUSG00000085471.1 ENSMUSG00000085471 ENSMUST00000126953 4933423P22Rik antisense Interval_8873 chr1 151699393 151699973 + 0 NA intron (ENSMUSG00000026483.13, intron 8 of 13) protein_coding-intron (ENSMUSG00000026483.13, intron 4 of 9) 55335 ENSMUSG00000100594.1 ENSMUSG00000100594 ENSMUST00000186444 2810414N06Rik lincRNA Interval_44080 chr13 40748991 40750352 + 0 NA Intergenic Intergenic 5323 ENSMUSG00000114640.1 ENSMUSG00000114640 ENSMUST00000224849 Gm48107 lincRNA Interval_174720 chrX 164053362 164054815 + 0 NA Intergenic Intergenic 22405 ENSMUSG00000040749.11 ENSMUSG00000040749 ENSMUST00000134272 Siah1b protein_coding Interval_1666 chr1 30895256 30895935 + 0 NA Intergenic Intergenic -27057 ENSMUSG00000104315.1 ENSMUSG00000104315 ENSMUST00000192050 Gm37906 TEC Interval_52307 chr14 44496704 44497320 + 0 NA intron (ENSMUSG00000072145.3, intron 1 of 3) protein_coding-intron (ENSMUSG00000072145.3, intron 1 of 3) 4549 ENSMUSG00000072145.3 ENSMUSG00000072145 ENSMUST00000096899 BC061237 protein_coding Interval_98171 chr2 149233787 149233998 + 0 NA Intergenic Intergenic -23385 ENSMUSG00000086963.1 ENSMUSG00000086963 ENSMUST00000135438 Gm14135 lincRNA Interval_66438 chr16 33860104 33860623 + 0 NA intron (ENSMUSG00000022817.15, intron 2 of 14) protein_coding-intron (ENSMUSG00000022817.15, intron 2 of 14) -31578 ENSMUSG00000022817.15 ENSMUSG00000022817 ENSMUST00000231409 Itgb5 protein_coding Interval_32678 chr11 109585025 109585533 + 0 NA intron (ENSMUSG00000041895.15, intron 4 of 7) protein_coding-intron (ENSMUSG00000041895.15, intron 4 of 11) 26688 ENSMUSG00000041895.15 ENSMUSG00000041895 ENSMUST00000153738 Wipi1 protein_coding Interval_92662 chr2 62141808 62142247 + 0 NA intron (ENSMUSG00000026904.17, intron 1 of 26) protein_coding-intron (ENSMUSG00000026904.17, intron 1 of 24) -171355 ENSMUSG00000083018.1 ENSMUSG00000083018 ENSMUST00000121668 Gm13555 processed_pseudogene Interval_158908 chr8 87875591 87876100 + 0 NA intron (ENSMUSG00000045333.15, intron 2 of 3) protein_coding-intron (ENSMUSG00000045333.15, intron 1 of 6) 78017 ENSMUSG00000045333.15 ENSMUSG00000045333 ENSMUST00000173092 Zfp423 protein_coding Interval_141777 chr6 134402637 134403409 + 0 NA exon (ENSMUSG00000030200.13, exon 3 of 3) protein_coding-exon (ENSMUSG00000030200.13, exon 3 of 3) 392 ENSMUSG00000107666.1 ENSMUSG00000107666 ENSMUST00000203352 4933406J09Rik antisense Interval_37888 chr12 72802784 72804642 + 0 NA Intergenic Intergenic -13999 ENSMUSG00000113779.1 ENSMUSG00000113779 ENSMUST00000222961 Gm33785 lincRNA Interval_48866 chr13 104161596 104162548 + 0 NA intron (ENSMUSG00000021711.17, intron 4 of 12) protein_coding-intron (ENSMUSG00000021711.17, intron 4 of 12) 16335 ENSMUSG00000021711.17 ENSMUSG00000021711 ENSMUST00000142745 Trappc13 protein_coding Interval_82321 chr18 70632747 70632998 + 0 NA Intergenic Intergenic 15165 ENSMUSG00000117810.1 ENSMUSG00000117810 ENSMUST00000236578 Gm8934 processed_pseudogene Interval_107751 chr3 113090362 113092193 + 0 NA Intergenic Intergenic -34652 ENSMUSG00000105665.1 ENSMUSG00000105665 ENSMUST00000199904 Gm38395 processed_pseudogene Interval_14466 chr10 34135091 34135533 + 0 NA Intergenic Intergenic -7328 ENSMUSG00000046031.7 ENSMUSG00000046031 ENSMUST00000062784 Calhm6 protein_coding Interval_107328 chr3 105899557 105900154 + 0 NA intron (ENSMUSG00000074344.7, intron 1 of 5) protein_coding-intron (ENSMUSG00000074344.7, intron 1 of 6) -4628 ENSMUSG00000118531.1 ENSMUSG00000118531 ENSMUST00000196748 Tmigd3 protein_coding Interval_138419 chr6 88028184 88028866 + 0 NA intron (ENSMUSG00000079477.9, intron 1 of 4) protein_coding-intron (ENSMUSG00000079477.9, intron 1 of 7) 13942 ENSMUSG00000108268.1 ENSMUSG00000108268 ENSMUST00000204735 Gm44187 TEC Interval_13460 chr10 18422762 18423588 + 0 NA intron (ENSMUSG00000039835.16, intron 1 of 3) protein_coding-intron (ENSMUSG00000039835.16, intron 1 of 6) -85934 ENSMUSG00000111313.1 ENSMUSG00000111313 ENSMUST00000213578 Gm18942 processed_pseudogene Interval_47837 chr13 93657828 93658920 + 0 NA intron (ENSMUSG00000042118.7, intron 7 of 7) protein_coding-intron (ENSMUSG00000042118.7, intron 7 of 7) 15928 ENSMUSG00000042118.7 ENSMUSG00000042118 ENSMUST00000015941 Bhmt2 protein_coding Interval_126658 chr5 91831689 91832440 + 0 NA Intergenic Intergenic -24991 ENSMUSG00000096726.2 ENSMUSG00000096726 ENSMUST00000178933 Gm5558 processed_pseudogene Interval_131668 chr5 139166772 139168299 + 0 NA intron (ENSMUSG00000025857.10, intron 1 of 3) protein_coding-intron (ENSMUSG00000025857.10, intron 7 of 12) -16842 ENSMUSG00000086873.1 ENSMUSG00000086873 ENSMUST00000151512 Gm15672 processed_transcript Interval_115821 chr4 105045418 105045793 + 0 NA intron (ENSMUSG00000028518.8, intron 6 of 8) protein_coding-intron (ENSMUSG00000028518.8, intron 6 of 8) 64285 ENSMUSG00000028518.8 ENSMUSG00000028518 ENSMUST00000030243 Prkaa2 protein_coding Interval_102088 chr3 16940983 16941854 + 0 NA Intergenic Intergenic -118106 ENSMUSG00000088644.1 ENSMUSG00000088644 ENSMUST00000158019 Gm26485 snRNA Interval_38563 chr12 80150319 80152129 + 0 NA Intergenic Intergenic -18628 ENSMUSG00000097729.2 ENSMUSG00000097729 ENSMUST00000180643 2310015A10Rik processed_transcript Interval_14367 chr10 31592941 31593362 + 0 NA intron (ENSMUSG00000063760.9, intron 1 of 5) protein_coding-intron (ENSMUSG00000063760.9, intron 1 of 5) 16033 ENSMUSG00000063760.9 ENSMUSG00000063760 ENSMUST00000081989 Rnf217 protein_coding Interval_40452 chr12 104960110 104960805 + 0 NA intron (ENSMUSG00000054150.12, intron 6 of 17) protein_coding-intron (ENSMUSG00000054150.12, intron 5 of 16) -33768 ENSMUSG00000100975.2 ENSMUSG00000100975 ENSMUST00000185486 Gm28875 lincRNA Interval_155708 chr8 36322111 36322415 + 0 NA Intergenic Intergenic 51370 ENSMUSG00000098154.2 ENSMUSG00000098154 ENSMUST00000183049 Gm5787 processed_pseudogene Interval_98981 chr2 156451260 156452740 + 0 NA TTS (ENSMUSG00000085524.1) antisense-TTS (ENSMUSG00000085524.1) 3651 ENSMUSG00000085524.1 ENSMUSG00000085524 ENSMUST00000147187 Gm14224 antisense Interval_69222 chr16 91464400 91465633 + 0 NA promoter-TSS (ENSMUSG00000084866.2) processed_transcript-promoter-TSS (ENSMUSG00000084866.2) -9 ENSMUSG00000084866.2 ENSMUSG00000084866 ENSMUST00000149172 A930006K02Rik processed_transcript Interval_139675 chr6 106663680 106664355 + 0 NA intron (ENSMUSG00000064293.14, intron 2 of 7) protein_coding-intron (ENSMUSG00000064293.14, intron 14 of 15) 8514 ENSMUSG00000064293.14 ENSMUSG00000064293 ENSMUST00000142626 Cntn4 protein_coding Interval_2042 chr1 36067863 36069687 + 0 NA exon (ENSMUSG00000045216.7, exon 1 of 2) protein_coding-exon (ENSMUSG00000045216.7, exon 1 of 2) -32915 ENSMUSG00000045216.7 ENSMUSG00000045216 ENSMUST00000194670 Hs6st1 protein_coding Interval_95611 chr2 112799611 112800394 + 0 NA exon (ENSMUSG00000057378.15, exon 42 of 103) protein_coding-exon (ENSMUSG00000057378.15, exon 42 of 103) -143454 ENSMUSG00000057378.15 ENSMUSG00000057378 ENSMUST00000208135 Ryr3 protein_coding Interval_46731 chr13 69690112 69691524 + 0 NA intron (ENSMUSG00000113299.1, intron 3 of 5) lincRNA-intron (ENSMUSG00000113299.1, intron 3 of 5) 6858 ENSMUSG00000113299.1 ENSMUSG00000113299 ENSMUST00000223164 Gm35618 lincRNA Interval_135318 chr6 38298304 38299695 + 0 NA exon (ENSMUSG00000047749.2, exon 1 of 4) protein_coding-exon (ENSMUSG00000047749.2, exon 1 of 4) 260 ENSMUSG00000047749.2 ENSMUSG00000047749 ENSMUST00000058524 Zc3hav1l protein_coding Interval_88017 chr19 57926599 57927131 + 0 NA intron (ENSMUSG00000054843.9, intron 26 of 28) protein_coding-intron (ENSMUSG00000054843.9, intron 26 of 28) -124302 ENSMUSG00000093757.1 ENSMUSG00000093757 ENSMUST00000176631 Mir5623 miRNA Interval_26365 chr11 57377937 57378131 + 0 NA Intergenic Intergenic -71073 ENSMUSG00000082476.1 ENSMUSG00000082476 ENSMUST00000118824 Gm12242 processed_pseudogene Interval_144777 chr7 28185014 28186265 + 0 NA intron (ENSMUSG00000002409.18, intron 8 of 10) protein_coding-intron (ENSMUSG00000002409.18, intron 8 of 10) 6145 ENSMUSG00000002409.18 ENSMUSG00000002409 ENSMUST00000172467 Dyrk1b protein_coding Interval_134120 chr6 20850915 20851189 + 0 NA Intergenic Intergenic 119938 ENSMUSG00000106763.1 ENSMUSG00000106763 ENSMUST00000201133 Gm19102 processed_pseudogene Interval_70136 chr17 5703316 5704154 + 0 NA intron (ENSMUSG00000034265.8, intron 3 of 8) protein_coding-intron (ENSMUSG00000034265.8, intron 3 of 8) -95756 ENSMUSG00000096965.7 ENSMUSG00000096965 ENSMUST00000181392 3300005D01Rik lincRNA Interval_47990 chr13 94885216 94885919 + 0 NA TTS (ENSMUSG00000021685.11) protein_coding-TTS (ENSMUSG00000021685.11) 2967 ENSMUSG00000021685.11 ENSMUSG00000021685 ENSMUST00000184985 Otp protein_coding Interval_100072 chr2 166931113 166931374 + 0 NA intron (ENSMUSG00000002718.14, intron 13 of 23) protein_coding-intron (ENSMUSG00000002718.14, intron 13 of 24) -12296 ENSMUSG00000090397.1 ENSMUSG00000090397 ENSMUST00000172037 Gm17096 antisense Interval_99471 chr2 161947620 161947937 + 0 NA intron (ENSMUSG00000053141.16, intron 7 of 29) protein_coding-intron (ENSMUSG00000053141.16, intron 7 of 30) -147623 ENSMUSG00000053141.16 ENSMUSG00000053141 ENSMUST00000129015 Ptprt protein_coding Interval_117361 chr4 123232514 123234243 + 0 NA promoter-TSS (ENSMUSG00000032744.4) protein_coding-promoter-TSS (ENSMUSG00000032744.4) -475 ENSMUSG00000032744.4 ENSMUSG00000032744 ENSMUST00000127172 Heyl protein_coding Interval_122709 chr5 24817029 24817510 + 0 NA intron (ENSMUSG00000028945.9, intron 2 of 2) protein_coding-intron (ENSMUSG00000028945.9, intron 2 of 7) 3568 ENSMUSG00000089475.1 ENSMUSG00000089475 ENSMUST00000158850 Gm25363 misc_RNA Interval_152049 chr7 128573663 128573893 + 0 NA Intergenic Intergenic 19565 ENSMUSG00000108795.1 ENSMUSG00000108795 ENSMUST00000205396 Gm45121 lincRNA Interval_18809 chr10 91038914 91039509 + 0 NA intron (ENSMUSG00000019979.12, intron 15 of 26) protein_coding-intron (ENSMUSG00000019979.12, intron 15 of 26) 33470 ENSMUSG00000087966.1 ENSMUSG00000087966 ENSMUST00000157341 Gm25390 snRNA Interval_80364 chr18 40197796 40198040 + 0 NA Intergenic Intergenic 16333 ENSMUSG00000117838.1 ENSMUSG00000117838 ENSMUST00000237035 Gm50396 lincRNA Interval_68479 chr16 77834779 77835021 + 0 NA Intergenic Intergenic -11704 ENSMUSG00000091193.2 ENSMUSG00000091193 ENSMUST00000169531 Gm17333 lincRNA Interval_7118 chr1 126377798 126377989 + 0 NA intron (ENSMUSG00000049690.15, intron 3 of 10) protein_coding-intron (ENSMUSG00000049690.15, intron 2 of 12) -53219 ENSMUSG00000103824.1 ENSMUSG00000103824 ENSMUST00000192213 Gm38177 TEC Interval_143347 chr7 6020771 6021336 + 0 NA Intergenic Intergenic 2031 ENSMUSG00000064231.1 ENSMUSG00000064231 ENSMUST00000072050 Gm5321 processed_pseudogene Interval_7210 chr1 127817059 127817302 + 0 NA intron (ENSMUSG00000051590.10, intron 7 of 7) protein_coding-intron (ENSMUSG00000051590.10, intron 9 of 9) 20609 ENSMUSG00000026349.14 ENSMUSG00000026349 ENSMUST00000153359 Ccnt2 protein_coding Interval_128418 chr5 113226216 113227272 + 0 NA promoter-TSS (ENSMUSG00000066964.2) protein_coding-promoter-TSS (ENSMUSG00000066964.2) -165 ENSMUSG00000066964.2 ENSMUSG00000066964 ENSMUST00000086615 Tmem211 protein_coding Interval_60568 chr15 75141842 75142235 + 0 NA Intergenic Intergenic -7214 ENSMUSG00000102051.1 ENSMUSG00000102051 ENSMUST00000190944 Ly6a2 transcribed_unprocessed_pseudogene Interval_110967 chr4 10934452 10935420 + 0 NA Intergenic Intergenic -11672 ENSMUSG00000081715.1 ENSMUSG00000081715 ENSMUST00000117608 Rps11-ps3 processed_pseudogene Interval_120991 chr4 152095995 152099048 + 0 NA intron (ENSMUSG00000039713.17, intron 1 of 20) protein_coding-intron (ENSMUSG00000039713.17, intron 1 of 19) -20450 ENSMUSG00000024793.14 ENSMUSG00000024793 ENSMUST00000153619 Tnfrsf25 protein_coding Interval_6926 chr1 120769478 120769972 + 0 NA Intergenic Intergenic 11282 ENSMUSG00000101386.1 ENSMUSG00000101386 ENSMUST00000188147 Gm29346 lincRNA Interval_115521 chr4 100095675 100097873 + 0 NA intron (ENSMUSG00000035305.5, intron 1 of 8) protein_coding-intron (ENSMUSG00000035305.5, intron 1 of 8) 983 ENSMUSG00000035305.5 ENSMUSG00000035305 ENSMUST00000039630 Ror1 protein_coding Interval_68726 chr16 85086314 85086776 + 0 NA intron (ENSMUSG00000022892.11, intron 3 of 13) protein_coding-intron (ENSMUSG00000022892.11, intron 3 of 15) 6434 ENSMUSG00000115469.1 ENSMUSG00000115469 ENSMUST00000227918 Gm49227 antisense Interval_174798 chrX 166728024 166728281 + 0 NA Intergenic Intergenic 66127 ENSMUSG00000086860.1 ENSMUSG00000086860 ENSMUST00000135086 Gm1720 lincRNA Interval_160980 chr8 116631976 116632501 + 0 NA intron (ENSMUSG00000031758.10, intron 1 of 6) protein_coding-intron (ENSMUSG00000031758.10, intron 1 of 6) 100753 ENSMUSG00000031758.10 ENSMUSG00000031758 ENSMUST00000109102 Cdyl2 protein_coding Interval_156296 chr8 47185508 47186000 + 0 NA TTS (ENSMUSG00000038143.16) protein_coding-TTS (ENSMUSG00000038143.16) 41412 ENSMUSG00000109606.1 ENSMUSG00000109606 ENSMUST00000211539 Gm45537 TEC Interval_18304 chr10 84729394 84730499 + 0 NA Intergenic Intergenic -32292 ENSMUSG00000020037.15 ENSMUSG00000020037 ENSMUST00000095388 Rfx4 protein_coding Interval_123065 chr5 29377703 29378962 + 0 NA promoter-TSS (ENSMUSG00000010721.15) protein_coding-promoter-TSS (ENSMUSG00000010721.15) -2 ENSMUSG00000010721.15 ENSMUSG00000010721 ENSMUST00000198367 Lmbr1 protein_coding Interval_132295 chr5 143992673 143993252 + 0 NA promoter-TSS (ENSMUSG00000029617.10) protein_coding-promoter-TSS (ENSMUSG00000029617.10) 11197 ENSMUSG00000029617.10 ENSMUSG00000029617 ENSMUST00000199922 Ccz1 protein_coding Interval_42109 chr13 8870199 8871813 + 0 NA promoter-TSS (ENSMUSG00000021147.17) protein_coding-promoter-TSS (ENSMUSG00000021147.17) 665 ENSMUSG00000113589.1 ENSMUSG00000113589 ENSMUST00000221835 Gm48374 TEC Interval_161653 chr8 121816148 121816843 + 0 NA intron (ENSMUSG00000040263.16, intron 4 of 10) protein_coding-intron (ENSMUSG00000040263.16, intron 4 of 11) 10080 ENSMUSG00000092418.1 ENSMUSG00000092418 ENSMUST00000173993 Gm20406 antisense Interval_32615 chr11 109178659 109179780 + 0 NA Intergenic Intergenic -19025 ENSMUSG00000081524.3 ENSMUSG00000081524 ENSMUST00000120913 Gm11658 processed_pseudogene Interval_165543 chr9 49214687 49215116 + 0 NA Intergenic Intergenic -35630 ENSMUSG00000054156.8 ENSMUSG00000054156 ENSMUST00000067007 Gm4894 protein_coding Interval_135482 chr6 39562295 39563131 + 0 NA Intergenic Intergenic -13679 ENSMUSG00000046947.12 ENSMUSG00000046947 ENSMUST00000127427 Adck2 protein_coding Interval_71153 chr17 20366576 20366843 + 0 NA intron (ENSMUSG00000056910.5, intron 5 of 5) protein_coding-intron (ENSMUSG00000056910.5, intron 5 of 5) -12354 ENSMUSG00000117018.1 ENSMUSG00000117018 ENSMUST00000233285 Gm7217 processed_pseudogene Interval_99449 chr2 161214540 161215267 + 0 NA exon (ENSMUSG00000067745.4, exon 3 of 3) lincRNA-exon (ENSMUSG00000067745.4, exon 3 of 3) -7623 ENSMUSG00000085469.1 ENSMUSG00000085469 ENSMUST00000145204 Gm14242 lincRNA Interval_153992 chr8 11699663 11700986 + 0 NA intron (ENSMUSG00000031509.10, intron 1 of 4) protein_coding-intron (ENSMUSG00000031509.10, intron 1 of 4) -3466 ENSMUSG00000093319.2 ENSMUSG00000093319 ENSMUST00000175578 Gm27854 misc_RNA Interval_46483 chr13 66498896 66499608 + 0 NA Intergenic Intergenic 8305 ENSMUSG00000114406.1 ENSMUSG00000114406 ENSMUST00000224488 Gm48323 processed_pseudogene Interval_170858 chr9 111271020 111272479 + 0 NA promoter-TSS (ENSMUSG00000032498.9) protein_coding-promoter-TSS (ENSMUSG00000032498.9) -2353 ENSMUSG00000046785.8 ENSMUSG00000046785 ENSMUST00000200053 Epm2aip1 protein_coding Interval_28005 chr11 72134964 72136927 + 0 NA promoter-TSS (ENSMUSG00000040543.16) protein_coding-promoter-TSS (ENSMUSG00000040543.16) -167 ENSMUSG00000040543.16 ENSMUSG00000040543 ENSMUST00000142471 Pitpnm3 protein_coding Interval_134542 chr6 29444906 29445240 + 0 NA exon (ENSMUSG00000068699.12, exon 14 of 48) protein_coding-exon (ENSMUSG00000068699.12, exon 14 of 48) 11817 ENSMUSG00000068699.12 ENSMUSG00000068699 ENSMUST00000065090 Flnc protein_coding Interval_18373 chr10 85366992 85367405 + 0 NA Intergenic Intergenic 33297 ENSMUSG00000087895.1 ENSMUSG00000087895 ENSMUST00000157270 Gm25281 miRNA Interval_92477 chr2 60028761 60029492 + 0 NA intron (ENSMUSG00000026987.16, intron 1 of 34) protein_coding-intron (ENSMUSG00000026987.16, intron 1 of 34) -8015 ENSMUSG00000085975.1 ENSMUSG00000085975 ENSMUST00000153675 Gm13572 lincRNA Interval_34336 chr12 3458366 3458569 + 0 NA intron (ENSMUSG00000037486.18, intron 5 of 11) protein_coding-intron (ENSMUSG00000037486.18, intron 5 of 10) -16192 ENSMUSG00000037486.18 ENSMUSG00000037486 ENSMUST00000152196 Asxl2 protein_coding Interval_69626 chr16 94700473 94701573 + 0 NA Intergenic Intergenic 12880 ENSMUSG00000116822.1 ENSMUSG00000116822 ENSMUST00000232250 Gm41504 TEC Interval_142951 chr6 147256867 147257291 + 0 NA exon (ENSMUSG00000048776.8, exon 3 of 4) protein_coding-exon (ENSMUSG00000048776.8, exon 3 of 4) 7104 ENSMUSG00000048776.8 ENSMUSG00000048776 ENSMUST00000204197 Pthlh protein_coding Interval_136975 chr6 65270548 65271711 + 0 NA TTS (ENSMUSG00000108097.1) processed_pseudogene-TTS (ENSMUSG00000108097.1) 781 ENSMUSG00000108097.1 ENSMUSG00000108097 ENSMUST00000204440 Gm44060 processed_pseudogene Interval_160092 chr8 106336979 106338514 + 0 NA intron (ENSMUSG00000031906.9, intron 1 of 8) protein_coding-intron (ENSMUSG00000031906.9, intron 1 of 8) 54439 ENSMUSG00000074113.4 ENSMUSG00000074113 ENSMUST00000137706 Gm10629 lincRNA Interval_99183 chr2 157851651 157852070 + 0 NA intron (ENSMUSG00000027649.15, intron 11 of 15) protein_coding-intron (ENSMUSG00000027649.15, intron 11 of 15) -49676 ENSMUSG00000062846.7 ENSMUSG00000062846 ENSMUST00000121302 Gm14176 processed_pseudogene Interval_25149 chr11 44556782 44557312 + 0 NA exon (ENSMUSG00000019189.13, exon 1 of 2) protein_coding-exon (ENSMUSG00000019189.13, exon 1 of 2) 216 ENSMUSG00000019189.13 ENSMUSG00000019189 ENSMUST00000129676 Rnf145 protein_coding Interval_3137 chr1 53894134 53895112 + 0 NA intron (ENSMUSG00000042807.15, intron 14 of 28) protein_coding-intron (ENSMUSG00000042807.15, intron 14 of 28) -7682 ENSMUSG00000087949.1 ENSMUSG00000087949 ENSMUST00000157324 Gm24251 snRNA Interval_101082 chr2 177209922 177210339 + 0 NA Intergenic Intergenic -14369 ENSMUSG00000078870.9 ENSMUSG00000078870 ENSMUST00000108964 Gm14410 protein_coding Interval_57692 chr15 15632036 15632282 + 0 NA Intergenic Intergenic -147835 ENSMUSG00000115266.1 ENSMUSG00000115266 ENSMUST00000226912 4930557F08Rik lincRNA Interval_12140 chr1 190034531 190034894 + 0 NA Intergenic Intergenic -112459 ENSMUSG00000026603.13 ENSMUSG00000026603 ENSMUST00000144452 Smyd2 protein_coding Interval_151980 chr7 127931643 127933002 + 0 NA TTS (ENSMUSG00000070371.11) protein_coding-TTS (ENSMUSG00000070371.11) -2227 ENSMUSG00000030800.10 ENSMUSG00000030800 ENSMUST00000206568 Prss8 protein_coding Interval_130582 chr5 129024620 129027543 + 0 NA Intergenic Intergenic 5879 ENSMUSG00000029430.13 ENSMUSG00000029430 ENSMUST00000111343 Ran protein_coding Interval_38409 chr12 78797349 78798155 + 0 NA intron (ENSMUSG00000021112.9, intron 3 of 3) protein_coding-intron (ENSMUSG00000021112.9, intron 3 of 14) -44964 ENSMUSG00000088822.1 ENSMUSG00000088822 ENSMUST00000158197 Gm25225 snRNA Interval_27935 chr11 70980674 70981470 + 0 NA TTS (ENSMUSG00000018446.8) protein_coding-TTS (ENSMUSG00000018446.8) 1935 ENSMUSG00000018446.8 ENSMUSG00000018446 ENSMUST00000179291 C1qbp protein_coding Interval_137924 chr6 83404065 83404688 + 0 NA TTS (ENSMUSG00000034832.15) protein_coding-TTS (ENSMUSG00000034832.15) -3274 ENSMUSG00000099045.1 ENSMUSG00000099045 ENSMUST00000184003 Mir6374 miRNA Interval_121514 chr5 3083520 3084019 + 0 NA Intergenic Intergenic -7000 ENSMUSG00000091936.1 ENSMUSG00000091936 ENSMUST00000161709 Gm3053 unprocessed_pseudogene Interval_84075 chr19 7067751 7068662 + 0 NA intron (ENSMUSG00000036278.7, intron 3 of 10) protein_coding-intron (ENSMUSG00000036278.7, intron 3 of 10) 11396 ENSMUSG00000036278.7 ENSMUSG00000036278 ENSMUST00000040261 Macrod1 protein_coding Interval_136682 chr6 57673239 57673703 + 0 NA Intergenic Intergenic 14109 ENSMUSG00000104204.1 ENSMUSG00000104204 ENSMUST00000194579 Gm37397 TEC Interval_53601 chr14 59793644 59794545 + 0 NA intron (ENSMUSG00000021983.16, intron 27 of 35) protein_coding-intron (ENSMUSG00000021983.16, intron 27 of 35) 151546 ENSMUSG00000114593.1 ENSMUSG00000114593 ENSMUST00000224256 Gm19716 transcribed_processed_pseudogene Interval_51072 chr14 21987326 21989925 + 0 NA intron (ENSMUSG00000039081.10, intron 1 of 2) protein_coding-intron (ENSMUSG00000039081.10, intron 1 of 2) 976 ENSMUSG00000039081.10 ENSMUSG00000039081 ENSMUST00000043409 Zfp503 protein_coding Interval_168600 chr9 84032766 84033209 + 0 NA intron (ENSMUSG00000032263.14, intron 8 of 10) protein_coding-intron (ENSMUSG00000032263.14, intron 8 of 10) -8170 ENSMUSG00000111757.1 ENSMUSG00000111757 ENSMUST00000215223 Gm46124 antisense Interval_106348 chr3 95535065 95535553 + 0 NA intron (ENSMUSG00000038642.10, intron 2 of 7) protein_coding-intron (ENSMUSG00000038642.10, intron 2 of 7) 4891 ENSMUSG00000083822.1 ENSMUSG00000083822 ENSMUST00000121058 Hmgb1-ps5 processed_pseudogene Interval_144206 chr7 19948775 19950918 + 0 NA promoter-TSS (ENSMUSG00000109281.1) processed_pseudogene-promoter-TSS (ENSMUSG00000109281.1) -274 ENSMUSG00000109281.1 ENSMUSG00000109281 ENSMUST00000207343 Gm44651 processed_pseudogene Interval_19287 chr10 96107189 96107977 + 0 NA Intergenic Intergenic -11578 ENSMUSG00000117008.1 ENSMUSG00000117008 ENSMUST00000233655 Gm49817 unitary_pseudogene Interval_167106 chr9 65328279 65328617 + 0 NA intron (ENSMUSG00000015357.10, intron 12 of 12) protein_coding-intron (ENSMUSG00000015357.10, intron 13 of 13) -4072 ENSMUSG00000111712.1 ENSMUSG00000111712 ENSMUST00000214251 Gm39363 lincRNA Interval_50172 chr14 8550881 8551579 + 0 NA intron (ENSMUSG00000021747.12, intron 6 of 12) protein_coding-intron (ENSMUSG00000021747.12, intron 6 of 15) 115009 ENSMUSG00000021747.12 ENSMUSG00000021747 ENSMUST00000225744 4930452B06Rik protein_coding Interval_56162 chr14 108956275 108956544 + 0 NA Intergenic Intergenic -42251 ENSMUSG00000075478.3 ENSMUSG00000075478 ENSMUST00000100322 Slitrk1 protein_coding Interval_160523 chr8 110273368 110273607 + 0 NA intron (ENSMUSG00000059854.8, intron 2 of 25) protein_coding-intron (ENSMUSG00000059854.8, intron 2 of 86) -6025 ENSMUSG00000097409.1 ENSMUSG00000097409 ENSMUST00000181456 Gm26832 antisense Interval_21547 chr10 129696823 129697742 + 0 NA Intergenic Intergenic 1304 ENSMUSG00000088147.1 ENSMUSG00000088147 ENSMUST00000157522 Gm24717 snoRNA Interval_155169 chr8 27184194 27184867 + 0 NA Intergenic Intergenic -9889 ENSMUSG00000031488.14 ENSMUSG00000031488 ENSMUST00000211646 Rab11fip1 protein_coding Interval_37945 chr12 73218802 73219345 + 0 NA exon (ENSMUSG00000021103.12, exon 7 of 8) protein_coding-exon (ENSMUSG00000021103.12, exon 7 of 8) 67637 ENSMUSG00000034442.11 ENSMUSG00000034442 ENSMUST00000221189 Trmt5 protein_coding Interval_15554 chr10 51328879 51329916 + 0 NA Intergenic Intergenic 90568 ENSMUSG00000111880.1 ENSMUSG00000111880 ENSMUST00000218609 Gm5040 processed_pseudogene Interval_33334 chr11 115982038 115982486 + 0 NA intron (ENSMUSG00000020758.15, intron 7 of 39) protein_coding-intron (ENSMUSG00000020758.15, intron 8 of 40) 7537 ENSMUSG00000020758.15 ENSMUSG00000020758 ENSMUST00000130286 Itgb4 protein_coding Interval_100934 chr2 173455879 173456295 + 0 NA Intergenic Intergenic 61521 ENSMUSG00000086114.1 ENSMUSG00000086114 ENSMUST00000147357 Gm14642 lincRNA Interval_114317 chr4 72610304 72610585 + 0 NA Intergenic Intergenic 67778 ENSMUSG00000083372.1 ENSMUSG00000083372 ENSMUST00000117763 Gm11235 processed_pseudogene Interval_32617 chr11 109199478 109200899 + 0 NA Intergenic Intergenic -39994 ENSMUSG00000081524.3 ENSMUSG00000081524 ENSMUST00000120913 Gm11658 processed_pseudogene Interval_101575 chr3 6966342 6966783 + 0 NA Intergenic Intergenic -10706 ENSMUSG00000089220.1 ENSMUSG00000089220 ENSMUST00000158595 Gm22074 snoRNA Interval_4369 chr1 73236966 73237283 + 0 NA Intergenic Intergenic -27701 ENSMUSG00000102266.1 ENSMUSG00000102266 ENSMUST00000194107 Gm38106 TEC Interval_60251 chr15 69884839 69886084 + 0 NA Intergenic Intergenic -126162 ENSMUSG00000116483.1 ENSMUSG00000116483 ENSMUST00000230802 Gm19782 lincRNA Interval_158262 chr8 80688090 80688562 + 0 NA intron (ENSMUSG00000042353.9, intron 6 of 7) protein_coding-intron (ENSMUSG00000042353.9, intron 6 of 7) 22535 ENSMUSG00000031715.14 ENSMUSG00000031715 ENSMUST00000148455 Smarca5 protein_coding Interval_101462 chr2 181568233 181568773 + 0 NA TTS (ENSMUSG00000089917.7) protein_coding-TTS (ENSMUSG00000089917.7) 5973 ENSMUSG00000089917.7 ENSMUSG00000089917 ENSMUST00000131949 Uckl1 protein_coding Interval_2117 chr1 36531685 36534235 + 0 NA intron (ENSMUSG00000067653.12, intron 3 of 7) protein_coding-intron (ENSMUSG00000067653.12, intron 3 of 8) 2779 ENSMUSG00000067653.12 ENSMUSG00000067653 ENSMUST00000193991 Ankrd23 protein_coding Interval_133379 chr6 4397826 4398063 + 0 NA Intergenic Intergenic 7024 ENSMUSG00000107450.1 ENSMUSG00000107450 ENSMUST00000204280 Gm2522 processed_pseudogene Interval_165885 chr9 54213758 54214212 + 0 NA intron (ENSMUSG00000032274.9, intron 1 of 1) protein_coding-intron (ENSMUSG00000032274.9, intron 1 of 1) -31911 ENSMUSG00000032274.9 ENSMUSG00000032274 ENSMUST00000216974 Cyp19a1 protein_coding Interval_137000 chr6 65870812 65871045 + 0 NA intron (ENSMUSG00000029913.14, intron 9 of 13) protein_coding-intron (ENSMUSG00000029913.14, intron 5 of 10) -6652 ENSMUSG00000088832.1 ENSMUSG00000088832 ENSMUST00000158207 Gm23543 snRNA Interval_135943 chr6 49019011 49019691 + 0 NA Intergenic Intergenic -17195 ENSMUSG00000029816.10 ENSMUSG00000029816 ENSMUST00000204460 Gpnmb protein_coding Interval_155589 chr8 34922268 34922935 + 0 NA intron (ENSMUSG00000031529.5, intron 2 of 26) protein_coding-intron (ENSMUSG00000031529.5, intron 2 of 26) -3833 ENSMUSG00000031529.5 ENSMUSG00000031529 ENSMUST00000211065 Tnks protein_coding Interval_77507 chr17 90463262 90463477 + 0 NA intron (ENSMUSG00000024109.18, intron 3 of 3) protein_coding-intron (ENSMUSG00000024109.18, intron 15 of 20) -6796 ENSMUSG00000024109.18 ENSMUSG00000024109 ENSMUST00000162002 Nrxn1 protein_coding Interval_73667 chr17 42596810 42597105 + 0 NA intron (ENSMUSG00000043972.8, intron 2 of 6) protein_coding-intron (ENSMUSG00000043972.8, intron 2 of 6) 14438 ENSMUSG00000043972.8 ENSMUSG00000043972 ENSMUST00000068355 Opn5 protein_coding Interval_169122 chr9 92916777 92917051 + 0 NA Intergenic Intergenic 21082 ENSMUSG00000099823.1 ENSMUSG00000099823 ENSMUST00000187280 Gm28054 lincRNA Interval_25151 chr11 44563643 44565474 + 0 NA exon (ENSMUSG00000019189.13, exon 11 of 11) protein_coding-exon (ENSMUSG00000019189.13, exon 11 of 11) 7727 ENSMUSG00000019189.13 ENSMUSG00000019189 ENSMUST00000129676 Rnf145 protein_coding Interval_148002 chr7 77575489 77575860 + 0 NA Intergenic Intergenic 163101 ENSMUSG00000108324.1 ENSMUSG00000108324 ENSMUST00000206827 Gm44608 TEC Interval_104911 chr3 78958420 78959068 + 0 NA Intergenic Intergenic 8055 ENSMUSG00000037096.6 ENSMUSG00000037096 ENSMUST00000036976 Gm9762 processed_pseudogene Interval_123687 chr5 34499107 34500354 + 0 NA exon (ENSMUSG00000059866.13, exon 5 of 7) protein_coding-exon (ENSMUSG00000059866.13, exon 5 of 7) 12416 ENSMUSG00000106678.1 ENSMUSG00000106678 ENSMUST00000200867 Gm43457 TEC Interval_135289 chr6 38087391 38087897 + 0 NA intron (ENSMUSG00000038600.12, intron 7 of 21) protein_coding-intron (ENSMUSG00000038600.12, intron 6 of 20) -4272 ENSMUSG00000038600.12 ENSMUSG00000038600 ENSMUST00000130816 Atp6v0a4 protein_coding Interval_162671 chr9 7714453 7715024 + 0 NA Intergenic Intergenic -8409 ENSMUSG00000110887.1 ENSMUSG00000110887 ENSMUST00000214564 Cbx3-ps8 processed_pseudogene Interval_33582 chr11 117345156 117346107 + 0 NA intron (ENSMUSG00000059248.13, intron 1 of 8) protein_coding-intron (ENSMUSG00000059248.13, intron 2 of 10) 13203 ENSMUSG00000059248.13 ENSMUSG00000059248 ENSMUST00000129387 Septin9 protein_coding Interval_77795 chr18 3593312 3594220 + 0 NA Intergenic Intergenic -22515 ENSMUSG00000117506.1 ENSMUSG00000117506 ENSMUST00000234745 Gm50091 TEC Interval_141673 chr6 133105007 133106105 + 0 NA promoter-TSS (ENSMUSG00000072704.6) protein_coding-promoter-TSS (ENSMUSG00000072704.6) 300 ENSMUSG00000072704.6 ENSMUSG00000072704 ENSMUST00000186945 Smim10l1 protein_coding Interval_70856 chr17 15427189 15427607 + 0 NA intron (ENSMUSG00000014763.8, intron 9 of 10) protein_coding-intron (ENSMUSG00000014763.8, intron 9 of 10) 7567 ENSMUSG00000116718.1 ENSMUSG00000116718 ENSMUST00000231947 Gm49668 lincRNA Interval_172918 chrX 53883977 53884519 + 0 NA exon (ENSMUSG00000080968.3, exon 1 of 1) processed_pseudogene-exon (ENSMUSG00000080968.3, exon 1 of 1) 172 ENSMUSG00000080968.3 ENSMUSG00000080968 ENSMUST00000120608 Atf1-ps processed_pseudogene Interval_69453 chr16 93574532 93575553 + 0 NA Intergenic Intergenic 11589 ENSMUSG00000022948.16 ENSMUSG00000022948 ENSMUST00000156298 Setd4 protein_coding Interval_30795 chr11 96505611 96506449 + 0 NA intron (ENSMUSG00000057058.16, intron 2 of 7) protein_coding-intron (ENSMUSG00000057058.16, intron 2 of 11) 22248 ENSMUSG00000057058.16 ENSMUSG00000057058 ENSMUST00000123814 Skap1 protein_coding Interval_7430 chr1 131269762 131270646 + 0 NA TTS (ENSMUSG00000042349.13) protein_coding-TTS (ENSMUSG00000042349.13) 340 ENSMUSG00000042349.13 ENSMUSG00000042349 ENSMUST00000159195 Ikbke protein_coding Interval_98998 chr2 156540986 156541731 + 0 NA exon (ENSMUSG00000027624.20, exon 22 of 22) protein_coding-exon (ENSMUSG00000027624.20, exon 22 of 22) -6252 ENSMUSG00000027628.10 ENSMUSG00000027628 ENSMUST00000126250 Aar2 protein_coding Interval_96850 chr2 128910589 128910830 + 0 NA Intergenic Intergenic 14983 ENSMUSG00000092719.1 ENSMUSG00000092719 ENSMUST00000174978 Gm22859 miRNA Interval_90810 chr2 32727016 32728711 + 0 NA intron (ENSMUSG00000059013.12, intron 1 of 10) protein_coding-intron (ENSMUSG00000059013.12, intron 2 of 11) 7015 ENSMUSG00000009551.2 ENSMUSG00000009551 ENSMUST00000009695 6330409D20Rik protein_coding Interval_43940 chr13 38194819 38196146 + 0 NA exon (ENSMUSG00000054889.10, exon 24 of 24) protein_coding-exon (ENSMUSG00000054889.10, exon 24 of 24) 17115 ENSMUSG00000054889.10 ENSMUSG00000054889 ENSMUST00000145151 Dsp protein_coding Interval_57978 chr15 25825448 25826073 + 0 NA Intergenic Intergenic 14851 ENSMUSG00000115593.1 ENSMUSG00000115593 ENSMUST00000228649 Gm4824 processed_pseudogene Interval_146367 chr7 45550452 45552207 + 0 NA intron (ENSMUSG00000110144.1, intron 1 of 1) protein_coding-intron (ENSMUSG00000040428.19, intron 17 of 19) 286 ENSMUSG00000110144.1 ENSMUSG00000110144 ENSMUST00000210460 Gm45564 antisense Interval_87391 chr19 48331871 48332797 + 0 NA intron (ENSMUSG00000063434.6, intron 1 of 26) protein_coding-intron (ENSMUSG00000063434.6, intron 1 of 26) -91689 ENSMUSG00000089004.1 ENSMUSG00000089004 ENSMUST00000158379 Gm23857 rRNA Interval_43387 chr13 29962102 29963244 + 0 NA intron (ENSMUSG00000016477.18, intron 1 of 6) protein_coding-intron (ENSMUSG00000016477.18, intron 1 of 6) 21718 ENSMUSG00000016477.18 ENSMUSG00000016477 ENSMUST00000146092 E2f3 protein_coding Interval_96974 chr2 130194640 130194883 + 0 NA promoter-TSS (ENSMUSG00000060332.9) protein_coding-promoter-TSS (ENSMUSG00000060332.9) -1782 ENSMUSG00000060332.9 ENSMUSG00000060332 ENSMUST00000166774 Tmc2 protein_coding Interval_119824 chr4 140218679 140221151 + 0 NA intron (ENSMUSG00000040972.8, intron 1 of 9) protein_coding-intron (ENSMUSG00000040972.8, intron 1 of 9) 26869 ENSMUSG00000040972.8 ENSMUSG00000040972 ENSMUST00000039331 Igsf21 protein_coding Interval_148688 chr7 84150861 84152584 + 0 NA promoter-TSS (ENSMUSG00000097016.2) bidirectional_promoter_lncRNA-promoter-TSS (ENSMUSG00000097016.2) -52 ENSMUSG00000038459.10 ENSMUSG00000038459 ENSMUST00000208271 Abhd17c protein_coding Interval_51400 chr14 27229914 27231000 + 0 NA intron (ENSMUSG00000021895.10, intron 4 of 13) protein_coding-intron (ENSMUSG00000021895.10, intron 4 of 13) -7605 ENSMUSG00000114888.1 ENSMUSG00000114888 ENSMUST00000225718 Gm49616 TEC Interval_106938 chr3 102060430 102060704 + 0 NA Intergenic Intergenic -7483 ENSMUSG00000104930.1 ENSMUSG00000104930 ENSMUST00000199964 Gm43243 processed_pseudogene Interval_89528 chr2 21920728 21920926 + 0 NA Intergenic Intergenic -125772 ENSMUSG00000077572.1 ENSMUSG00000077572 ENSMUST00000104384 Gm24886 snoRNA Interval_149425 chr7 98399919 98401234 + 0 NA intron (ENSMUSG00000108449.1, intron 3 of 4) lincRNA-intron (ENSMUSG00000108449.1, intron 3 of 4) 15048 ENSMUSG00000108449.1 ENSMUSG00000108449 ENSMUST00000206249 Gm44507 lincRNA Interval_135826 chr6 47601361 47602503 + 0 NA Intergenic Intergenic -6874 ENSMUSG00000029687.16 ENSMUSG00000029687 ENSMUST00000170327 Ezh2 protein_coding Interval_49655 chr13 113823433 113823770 + 0 NA intron (ENSMUSG00000042348.10, intron 1 of 3) protein_coding-intron (ENSMUSG00000042348.10, intron 1 of 4) 29008 ENSMUSG00000042348.10 ENSMUSG00000042348 ENSMUST00000224068 Arl15 protein_coding Interval_54814 chr14 75395604 75397202 + 0 NA intron (ENSMUSG00000115615.1, intron 1 of 4) lincRNA-intron (ENSMUSG00000115615.1, intron 1 of 4) 4043 ENSMUSG00000115615.1 ENSMUSG00000115615 ENSMUST00000227736 Gm49200 lincRNA Interval_154139 chr8 13000987 13001734 + 0 NA exon (ENSMUSG00000031442.21, exon 12 of 30) protein_coding-exon (ENSMUSG00000031442.21, exon 12 of 30) -20581 ENSMUSG00000081951.1 ENSMUSG00000081951 ENSMUST00000118696 Gm15352 processed_pseudogene Interval_7017 chr1 122328430 122328708 + 0 NA Intergenic Intergenic 123424 ENSMUSG00000099960.1 ENSMUSG00000099960 ENSMUST00000185679 Gm28590 lincRNA Interval_114765 chr4 84870006 84870567 + 0 NA Intergenic Intergenic -14179 ENSMUSG00000038070.15 ENSMUSG00000038070 ENSMUST00000107190 Cntln protein_coding Interval_138710 chr6 91332316 91332903 + 0 NA Intergenic Intergenic 32488 ENSMUSG00000030093.7 ENSMUSG00000030093 ENSMUST00000132936 Wnt7a protein_coding Interval_117845 chr4 126588161 126588856 + 0 NA intron (ENSMUSG00000042489.15, intron 4 of 4) protein_coding-intron (ENSMUSG00000042489.15, intron 21 of 25) -3699 ENSMUSG00000081319.1 ENSMUSG00000081319 ENSMUST00000121439 Gm12936 processed_pseudogene Interval_118980 chr4 134837952 134838997 + 0 NA intron (ENSMUSG00000028826.14, intron 1 of 6) protein_coding-intron (ENSMUSG00000028826.14, intron 1 of 10) -27261 ENSMUSG00000028826.14 ENSMUSG00000028826 ENSMUST00000136113 Maco1 protein_coding Interval_20912 chr10 121958977 121959200 + 0 NA intron (ENSMUSG00000020121.15, intron 1 of 3) protein_coding-intron (ENSMUSG00000020121.15, intron 1 of 21) 88227 ENSMUSG00000020121.15 ENSMUSG00000020121 ENSMUST00000162710 Srgap1 protein_coding Interval_113410 chr4 54676193 54676905 + 0 NA intron (ENSMUSG00000086371.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000086371.1, intron 1 of 1) -6357 ENSMUSG00000083868.1 ENSMUSG00000083868 ENSMUST00000121221 Gm12477 processed_pseudogene Interval_17607 chr10 78135028 78135978 + 0 NA intron (ENSMUSG00000112662.1, intron 1 of 3) lincRNA-intron (ENSMUSG00000112662.1, intron 1 of 3) 2594 ENSMUSG00000112662.1 ENSMUSG00000112662 ENSMUST00000218616 Gm47922 lincRNA Interval_138232 chr6 86487005 86488368 + 0 NA intron (ENSMUSG00000101655.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000101655.1, intron 1 of 1) 541 ENSMUSG00000101655.1 ENSMUSG00000101655 ENSMUST00000189386 2310040G24Rik lincRNA Interval_152141 chr7 130040686 130041448 + 0 NA Intergenic Intergenic 5973 ENSMUSG00000065763.1 ENSMUSG00000065763 ENSMUST00000083829 Gm23847 snRNA Interval_159188 chr8 91483179 91483394 + 0 NA intron (ENSMUSG00000055932.15, intron 3 of 5) protein_coding-intron (ENSMUSG00000055932.15, intron 6 of 8) -8688 ENSMUSG00000110138.1 ENSMUSG00000110138 ENSMUST00000211287 4831440D22Rik antisense Interval_38687 chr12 81026645 81027701 + 0 NA intron (ENSMUSG00000021136.13, intron 1 of 11) protein_coding-intron (ENSMUSG00000021136.13, intron 1 of 12) 345 ENSMUSG00000021136.13 ENSMUSG00000021136 ENSMUST00000129362 Smoc1 protein_coding Interval_152125 chr7 129680602 129681191 + 0 NA intron (ENSMUSG00000108481.1, intron 2 of 2) sense_intronic-intron (ENSMUSG00000108481.1, intron 2 of 2) 13491 ENSMUSG00000108481.1 ENSMUSG00000108481 ENSMUST00000205836 Gm33248 sense_intronic Interval_95116 chr2 104002466 104003594 + 0 NA intron (ENSMUSG00000046085.7, intron 3 of 4) protein_coding-intron (ENSMUSG00000046085.7, intron 3 of 4) -24818 ENSMUSG00000027180.12 ENSMUSG00000027180 ENSMUST00000102565 Fbxo3 protein_coding Interval_71856 chr17 26560541 26562135 + 0 NA promoter-TSS (ENSMUSG00000001576.15) protein_coding-promoter-TSS (ENSMUSG00000001576.15) 18578 ENSMUSG00000068604.4 ENSMUSG00000068604 ENSMUST00000090257 Gm8225 processed_pseudogene Interval_89404 chr2 20493607 20494921 + 0 NA intron (ENSMUSG00000036617.17, intron 2 of 3) protein_coding-intron (ENSMUSG00000036617.17, intron 3 of 7) -15783 ENSMUSG00000036617.17 ENSMUSG00000036617 ENSMUST00000156587 Etl4 protein_coding Interval_88676 chr2 9628461 9629212 + 0 NA Intergenic Intergenic 2505 ENSMUSG00000104276.1 ENSMUSG00000104276 ENSMUST00000191950 Gm37866 TEC Interval_11290 chr1 180777425 180778622 + 0 NA Intergenic Intergenic -9367 ENSMUSG00000103156.1 ENSMUSG00000103156 ENSMUST00000193209 Gm38293 lincRNA Interval_116804 chr4 117366941 117368084 + 0 NA intron (ENSMUSG00000028677.19, intron 2 of 2) protein_coding-intron (ENSMUSG00000028677.19, intron 2 of 14) 71368 ENSMUSG00000085749.1 ENSMUSG00000085749 ENSMUST00000139618 Gm12843 antisense Interval_89073 chr2 15522778 15523263 + 0 NA Intergenic Intergenic -3459 ENSMUSG00000075520.5 ENSMUSG00000075520 ENSMUST00000146205 Malrd1 protein_coding Interval_83400 chr18 84906172 84906694 + 0 NA Intergenic Intergenic -28595 ENSMUSG00000034391.12 ENSMUSG00000034391 ENSMUST00000225015 Fbxo15 protein_coding Interval_89222 chr2 18179385 18179843 + 0 NA promoter-TSS (ENSMUSG00000081619.1) processed_pseudogene-promoter-TSS (ENSMUSG00000081619.1) -172 ENSMUSG00000081619.1 ENSMUSG00000081619 ENSMUST00000118087 Gm13351 processed_pseudogene Interval_30637 chr11 95595709 95596735 + 0 NA Intergenic Intergenic -8487 ENSMUSG00000000120.6 ENSMUSG00000000120 ENSMUST00000000122 Ngfr protein_coding Interval_159654 chr8 96121981 96124243 + 0 NA Intergenic Intergenic -186407 ENSMUSG00000110623.1 ENSMUSG00000110623 ENSMUST00000212446 Gm32005 lincRNA Interval_39308 chr12 86573861 86574214 + 0 NA Intergenic Intergenic -76536 ENSMUSG00000113369.1 ENSMUSG00000113369 ENSMUST00000220511 Gm8504 processed_pseudogene Interval_43632 chr13 34238192 34239873 + 0 NA intron (ENSMUSG00000038267.15, intron 3 of 9) protein_coding-intron (ENSMUSG00000038267.15, intron 3 of 10) 38220 ENSMUSG00000088573.1 ENSMUSG00000088573 ENSMUST00000157948 Gm24530 misc_RNA Interval_157546 chr8 71340604 71341610 + 0 NA intron (ENSMUSG00000004677.17, intron 16 of 39) protein_coding-intron (ENSMUSG00000004677.17, intron 16 of 39) -26110 ENSMUSG00000002395.14 ENSMUSG00000002395 ENSMUST00000137137 Use1 protein_coding Interval_5228 chr1 86581880 86583060 + 0 NA promoter-TSS (ENSMUSG00000026239.14) protein_coding-promoter-TSS (ENSMUSG00000026239.14) 47 ENSMUSG00000026239.14 ENSMUSG00000026239 ENSMUST00000146220 Pde6d protein_coding Interval_86462 chr19 40736782 40737680 + 0 NA TTS (ENSMUSG00000048120.16) protein_coding-TTS (ENSMUSG00000048120.16) -11522 ENSMUSG00000108929.2 ENSMUSG00000108929 ENSMUST00000207791 Cc2d2b protein_coding Interval_130637 chr5 129369456 129369676 + 0 NA Intergenic Intergenic 5446 ENSMUSG00000104681.1 ENSMUSG00000104681 ENSMUST00000199076 Gm43001 lincRNA Interval_72197 chr17 28532160 28532581 + 0 NA exon (ENSMUSG00000024223.3, exon 3 of 6) protein_coding-exon (ENSMUSG00000024223.3, exon 3 of 6) 1564 ENSMUSG00000024223.3 ENSMUSG00000024223 ENSMUST00000233114 Armc12 protein_coding Interval_40096 chr12 101130998 101132594 + 0 NA Intergenic Intergenic -14685 ENSMUSG00000113817.1 ENSMUSG00000113817 ENSMUST00000223122 Gm21056 transcribed_unprocessed_pseudogene Interval_38718 chr12 81532200 81533345 + 0 NA promoter-TSS (ENSMUSG00000091947.1) processed_transcript-promoter-TSS (ENSMUSG00000091947.1) 105 ENSMUSG00000021139.17 ENSMUSG00000021139 ENSMUST00000110339 Gm20498 protein_coding Interval_1772 chr1 33680519 33681313 + 0 NA Intergenic Intergenic -6688 ENSMUSG00000102198.1 ENSMUSG00000102198 ENSMUST00000193126 Gm38173 TEC Interval_84473 chr19 11592720 11593923 + 0 NA promoter-TSS (ENSMUSG00000024679.10) protein_coding-promoter-TSS (ENSMUSG00000024679.10) 52 ENSMUSG00000024679.10 ENSMUSG00000024679 ENSMUST00000135351 Ms4a6d protein_coding Interval_100743 chr2 172281935 172282780 + 0 NA Intergenic Intergenic -5776 ENSMUSG00000085949.1 ENSMUSG00000085949 ENSMUST00000152112 Gm14275 lincRNA Interval_6892 chr1 120451579 120451907 + 0 NA Intergenic Intergenic 15938 ENSMUSG00000101275.1 ENSMUSG00000101275 ENSMUST00000186237 1700012E03Rik lincRNA Interval_111969 chr4 32890859 32891631 + 0 NA intron (ENSMUSG00000040183.13, intron 1 of 16) protein_coding-intron (ENSMUSG00000040183.13, intron 1 of 16) -1441 ENSMUSG00000083565.1 ENSMUSG00000083565 ENSMUST00000119904 Gm11941 processed_pseudogene Interval_77888 chr18 5042326 5042677 + 0 NA intron (ENSMUSG00000024236.18, intron 3 of 37) protein_coding-intron (ENSMUSG00000024236.18, intron 3 of 37) 7335 ENSMUSG00000024236.18 ENSMUSG00000024236 ENSMUST00000129543 Svil protein_coding Interval_83737 chr19 4293781 4295114 + 0 NA intron (ENSMUSG00000024858.14, intron 2 of 3) protein_coding-intron (ENSMUSG00000024858.14, intron 3 of 21) -6598 ENSMUSG00000024858.14 ENSMUSG00000024858 ENSMUST00000167511 Grk2 protein_coding Interval_14964 chr10 41505104 41507040 + 0 NA intron (ENSMUSG00000078451.5, intron 6 of 7) protein_coding-intron (ENSMUSG00000078451.5, intron 6 of 7) -13820 ENSMUSG00000019818.15 ENSMUSG00000019818 ENSMUST00000186388 Cd164 protein_coding Interval_3988 chr1 65535658 65536083 + 0 NA Intergenic Intergenic -11795 ENSMUSG00000099819.1 ENSMUSG00000099819 ENSMUST00000189087 Gm28728 processed_pseudogene Interval_62784 chr15 96942867 96943326 + 0 NA Intergenic Intergenic -19691 ENSMUSG00000116202.1 ENSMUSG00000116202 ENSMUST00000229718 Rpl10a-ps3 processed_pseudogene Interval_72665 chr17 31424444 31426367 + 0 NA intron (ENSMUSG00000041119.12, intron 2 of 15) protein_coding-intron (ENSMUSG00000041119.12, intron 4 of 18) 9613 ENSMUSG00000118157.1 ENSMUSG00000118157 ENSMUST00000236083 Gm9902 antisense Interval_15755 chr10 56106470 56107450 + 0 NA promoter-TSS (ENSMUSG00000047669.8) protein_coding-promoter-TSS (ENSMUSG00000047669.8) -4957 ENSMUSG00000112528.1 ENSMUSG00000112528 ENSMUST00000218919 Gm29794 processed_pseudogene Interval_153865 chr8 10200108 10201305 + 0 NA intron (ENSMUSG00000039057.11, intron 1 of 16) protein_coding-intron (ENSMUSG00000039057.11, intron 1 of 34) -48582 ENSMUSG00000039057.11 ENSMUSG00000039057 ENSMUST00000042103 Myo16 protein_coding Interval_101143 chr2 178431420 178431712 + 0 NA intron (ENSMUSG00000039155.15, intron 1 of 13) protein_coding-intron (ENSMUSG00000039155.15, intron 1 of 14) 16984 ENSMUSG00000070476.10 ENSMUSG00000070476 ENSMUST00000129003 Fam217b protein_coding Interval_162577 chr9 4920230 4920978 + 0 NA Intergenic Intergenic -57355 ENSMUSG00000110644.1 ENSMUSG00000110644 ENSMUST00000212452 Gm7390 processed_pseudogene Interval_83842 chr19 5041065 5041749 + 0 NA promoter-TSS (ENSMUSG00000080268.4) protein_coding-promoter-TSS (ENSMUSG00000080268.4) 2500 ENSMUSG00000047379.7 ENSMUSG00000047379 ENSMUST00000235776 B4gat1 protein_coding Interval_128804 chr5 115364719 115366567 + 0 NA intron (ENSMUSG00000087292.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000087292.1, intron 1 of 2) -5520 ENSMUSG00000086352.1 ENSMUSG00000086352 ENSMUST00000139500 4930401G09Rik lincRNA Interval_12673 chr10 4264123 4268938 + 0 NA exon (ENSMUSG00000038587.10, exon 1 of 4) protein_coding-exon (ENSMUSG00000038587.10, exon 1 of 4) -53416 ENSMUSG00000111266.1 ENSMUSG00000111266 ENSMUST00000213553 Gm30570 lincRNA Interval_16717 chr10 67185555 67186074 + 0 NA promoter-TSS (ENSMUSG00000037876.17) protein_coding-promoter-TSS (ENSMUSG00000037876.17) 66 ENSMUSG00000037876.17 ENSMUSG00000037876 ENSMUST00000173236 Jmjd1c protein_coding Interval_101853 chr3 10087357 10088362 + 0 NA promoter-TSS (ENSMUSG00000049230.8) protein_coding-promoter-TSS (ENSMUSG00000049230.8) -251 ENSMUSG00000049230.8 ENSMUSG00000049230 ENSMUST00000061419 Gm9833 protein_coding Interval_153810 chr8 8861112 8862041 + 0 NA Intergenic Intergenic 71123 ENSMUSG00000109346.1 ENSMUSG00000109346 ENSMUST00000209045 Gm44515 lincRNA Interval_609 chr1 8863780 8864063 + 0 NA intron (ENSMUSG00000025909.16, intron 3 of 8) protein_coding-intron (ENSMUSG00000025909.16, intron 3 of 19) 7158 ENSMUSG00000104504.1 ENSMUSG00000104504 ENSMUST00000192115 Gm7445 processed_pseudogene Interval_128356 chr5 112740648 112741206 + 0 NA intron (ENSMUSG00000072720.9, intron 6 of 10) protein_coding-intron (ENSMUSG00000072720.9, intron 39 of 43) -52405 ENSMUSG00000098230.7 ENSMUSG00000098230 ENSMUST00000189887 1700095B10Rik antisense Interval_61651 chr15 83171343 83172238 + 0 NA promoter-TSS (ENSMUSG00000116508.1) antisense-promoter-TSS (ENSMUSG00000116508.1) -560 ENSMUSG00000116508.1 ENSMUSG00000116508 ENSMUST00000231106 Gm49463 antisense Interval_140156 chr6 114916452 114917956 + 0 NA intron (ENSMUSG00000030315.15, intron 2 of 5) protein_coding-intron (ENSMUSG00000030315.15, intron 1 of 4) 4612 ENSMUSG00000030315.15 ENSMUSG00000030315 ENSMUST00000204693 Vgll4 protein_coding Interval_40928 chr12 109958058 109959322 + 0 NA Intergenic Intergenic 46905 ENSMUSG00000112940.1 ENSMUSG00000112940 ENSMUST00000223541 4930511J24Rik lincRNA Interval_143267 chr7 4865166 4866928 + 0 NA intron (ENSMUSG00000052605.12, intron 1 of 5) protein_coding-intron (ENSMUSG00000052605.12, intron 1 of 5) 4211 ENSMUSG00000052605.12 ENSMUSG00000052605 ENSMUST00000208173 Isoc2b protein_coding Interval_167059 chr9 64951103 64952284 + 0 NA promoter-TSS (ENSMUSG00000034452.7) protein_coding-promoter-TSS (ENSMUSG00000034452.7) -86 ENSMUSG00000034452.7 ENSMUSG00000034452 ENSMUST00000037798 Slc24a1 protein_coding Interval_149366 chr7 97745248 97745759 + 0 NA Intergenic Intergenic -7214 ENSMUSG00000042797.9 ENSMUSG00000042797 ENSMUST00000205932 Aqp11 protein_coding Interval_153467 chr7 145007722 145007946 + 0 NA Intergenic Intergenic -67909 ENSMUSG00000070348.5 ENSMUSG00000070348 ENSMUST00000135985 Ccnd1 protein_coding Interval_149807 chr7 101683879 101685019 + 0 NA intron (ENSMUSG00000001829.17, intron 1 of 4) protein_coding-intron (ENSMUSG00000001829.17, intron 2 of 15) 20676 ENSMUSG00000001829.17 ENSMUSG00000001829 ENSMUST00000150832 Clpb protein_coding Interval_167127 chr9 65526755 65527100 + 0 NA intron (ENSMUSG00000111818.1, intron 1 of 1) processed_transcript-intron (ENSMUSG00000111818.1, intron 1 of 1) 2879 ENSMUSG00000111818.1 ENSMUSG00000111818 ENSMUST00000216282 Gm17749 processed_transcript Interval_92436 chr2 59713529 59713883 + 0 NA intron (ENSMUSG00000035168.16, intron 1 of 1) protein_coding-intron (ENSMUSG00000035168.16, intron 3 of 26) -92362 ENSMUSG00000035168.16 ENSMUSG00000035168 ENSMUST00000147650 Tanc1 protein_coding Interval_89880 chr2 26184014 26184778 + 0 NA Intergenic Intergenic 7282 ENSMUSG00000085545.1 ENSMUSG00000085545 ENSMUST00000133025 Gm13553 lincRNA Interval_42429 chr13 13460413 13462513 + 0 NA intron (ENSMUSG00000005397.8, intron 1 of 13) protein_coding-intron (ENSMUSG00000005397.8, intron 1 of 19) 20942 ENSMUSG00000113380.1 ENSMUSG00000113380 ENSMUST00000220813 Gm48682 antisense Interval_83860 chr19 5145253 5145758 + 0 NA intron (ENSMUSG00000024855.10, intron 12 of 22) protein_coding-intron (ENSMUSG00000024855.10, intron 11 of 23) -2006 ENSMUSG00000024855.10 ENSMUSG00000024855 ENSMUST00000236470 Pacs1 protein_coding Interval_91473 chr2 39127164 39127355 + 0 NA intron (ENSMUSG00000035236.17, intron 4 of 17) protein_coding-intron (ENSMUSG00000035236.17, intron 3 of 17) -26705 ENSMUSG00000107833.1 ENSMUSG00000107833 ENSMUST00000204611 Gm18791 processed_pseudogene Interval_112491 chr4 41577053 41577569 + 0 NA intron (ENSMUSG00000061322.15, intron 1 of 19) protein_coding-intron (ENSMUSG00000061322.15, intron 1 of 19) -7773 ENSMUSG00000028439.14 ENSMUSG00000028439 ENSMUST00000146276 Fam219a protein_coding Interval_5801 chr1 91969161 91969882 + 0 NA intron (ENSMUSG00000026313.16, intron 11 of 22) protein_coding-intron (ENSMUSG00000026313.16, intron 14 of 25) -6466 ENSMUSG00000103101.1 ENSMUSG00000103101 ENSMUST00000194827 Gm37048 TEC Interval_158535 chr8 84319134 84319534 + 0 NA Intergenic Intergenic -15601 ENSMUSG00000109653.1 ENSMUSG00000109653 ENSMUST00000210948 Gm45608 processed_pseudogene Interval_143441 chr7 6801074 6802229 + 0 NA intron (ENSMUSG00000051527.11, intron 2 of 7) protein_coding-intron (ENSMUSG00000051527.11, intron 2 of 7) -1936 ENSMUSG00000092815.1 ENSMUSG00000092815 ENSMUST00000175074 Mir3099 miRNA Interval_74355 chr17 49368633 49368954 + 0 NA Intergenic Intergenic -37297 ENSMUSG00000117198.1 ENSMUSG00000117198 ENSMUST00000233953 Gm18067 processed_pseudogene Interval_6871 chr1 120252387 120252624 + 0 NA intron (ENSMUSG00000026389.16, intron 2 of 5) protein_coding-intron (ENSMUSG00000026389.16, intron 1 of 4) 12750 ENSMUSG00000026389.16 ENSMUSG00000026389 ENSMUST00000112643 Steap3 protein_coding Interval_54249 chr14 66868105 66869515 + 0 NA promoter-TSS (ENSMUSG00000022048.8) protein_coding-promoter-TSS (ENSMUSG00000022048.8) -40 ENSMUSG00000075553.2 ENSMUSG00000075553 ENSMUST00000225817 Gm5464 lincRNA Interval_97096 chr2 131198141 131198727 + 0 NA TTS (ENSMUSG00000027330.16) protein_coding-TTS (ENSMUSG00000027330.16) 5560 ENSMUSG00000027330.16 ENSMUSG00000027330 ENSMUST00000145556 Cdc25b protein_coding Interval_61404 chr15 81379920 81380405 + 0 NA intron (ENSMUSG00000022403.15, intron 5 of 11) protein_coding-intron (ENSMUSG00000022403.15, intron 5 of 11) 14441 ENSMUSG00000022403.15 ENSMUSG00000022403 ENSMUST00000169204 St13 protein_coding Interval_25107 chr11 44086872 44087447 + 0 NA intron (ENSMUSG00000087172.1, intron 5 of 6) lincRNA-intron (ENSMUSG00000087172.1, intron 5 of 6) 128070 ENSMUSG00000087172.1 ENSMUSG00000087172 ENSMUST00000148504 Gm12153 lincRNA Interval_153873 chr8 10404655 10405944 + 0 NA intron (ENSMUSG00000039057.11, intron 14 of 16) protein_coding-intron (ENSMUSG00000039057.11, intron 13 of 34) 156011 ENSMUSG00000039057.11 ENSMUSG00000039057 ENSMUST00000042103 Myo16 protein_coding Interval_11296 chr1 180803574 180803937 + 0 NA intron (ENSMUSG00000060743.12, intron 4 of 4) protein_coding-intron (ENSMUSG00000060743.12, intron 3 of 3) -10021 ENSMUSG00000073485.3 ENSMUSG00000073485 ENSMUST00000097448 H3f3aos antisense Interval_2095 chr1 36388692 36389403 + 0 NA intron (ENSMUSG00000037432.15, intron 6 of 12) protein_coding-intron (ENSMUSG00000037432.15, intron 17 of 52) 3583 ENSMUSG00000037432.15 ENSMUSG00000037432 ENSMUST00000140452 Fer1l5 protein_coding Interval_157656 chr8 72112681 72112854 + 0 NA exon (ENSMUSG00000046881.7, exon 2 of 2) protein_coding-exon (ENSMUSG00000046881.7, exon 2 of 2) 1533 ENSMUSG00000088460.1 ENSMUSG00000088460 ENSMUST00000157835 Gm24747 rRNA Interval_72578 chr17 30784476 30784742 + 0 NA intron (ENSMUSG00000033826.10, intron 3 of 6) protein_coding-intron (ENSMUSG00000033826.10, intron 72 of 92) -2480 ENSMUSG00000094785.1 ENSMUSG00000094785 ENSMUST00000083205 Gm24661 snRNA Interval_22800 chr11 15983154 15983425 + 0 NA Intergenic Intergenic -54504 ENSMUSG00000104323.1 ENSMUSG00000104323 ENSMUST00000193500 Gm37319 TEC Interval_19643 chr10 106827679 106827930 + 0 NA intron (ENSMUSG00000053825.15, intron 8 of 31) protein_coding-intron (ENSMUSG00000053825.15, intron 8 of 31) -65202 ENSMUSG00000053825.15 ENSMUSG00000053825 ENSMUST00000219024 Ppfia2 protein_coding Interval_122708 chr5 24812902 24813128 + 0 NA exon (ENSMUSG00000028945.9, exon 3 of 3) protein_coding-exon (ENSMUSG00000028945.9, exon 3 of 3) 7822 ENSMUSG00000089475.1 ENSMUSG00000089475 ENSMUST00000158850 Gm25363 misc_RNA Interval_151319 chr7 120951357 120951786 + 0 NA Intergenic Intergenic 16741 ENSMUSG00000030880.14 ENSMUSG00000030880 ENSMUST00000209014 Polr3e protein_coding Interval_61105 chr15 79258375 79258922 + 0 NA exon (ENSMUSG00000018126.15, exon 14 of 14) protein_coding-exon (ENSMUSG00000018126.15, exon 14 of 14) 3074 ENSMUSG00000091135.1 ENSMUSG00000091135 ENSMUST00000170221 Lgals1-ps2 transcribed_processed_pseudogene Interval_23312 chr11 21302464 21302790 + 0 NA intron (ENSMUSG00000020128.15, intron 1 of 3) protein_coding-intron (ENSMUSG00000020128.15, intron 12 of 22) 7067 ENSMUSG00000084048.1 ENSMUSG00000084048 ENSMUST00000120479 Gm12042 processed_pseudogene Interval_173189 chrX 73965921 73968083 + 0 NA promoter-TSS (ENSMUSG00000031386.14) protein_coding-promoter-TSS (ENSMUSG00000031386.14) -19570 ENSMUSG00000031386.14 ENSMUSG00000031386 ENSMUST00000128325 Hcfc1 protein_coding Interval_163320 chr9 20842633 20843685 + 0 NA intron (ENSMUSG00000118527.1, intron 4 of 19) unprocessed_pseudogene-intron (ENSMUSG00000118527.1, intron 4 of 19) 3631 ENSMUSG00000118527.1 ENSMUSG00000118527 ENSMUST00000238827 AC170598.1 unprocessed_pseudogene Interval_97613 chr2 140648407 140649186 + 0 NA intron (ENSMUSG00000068205.14, intron 3 of 3) protein_coding-intron (ENSMUSG00000068205.14, intron 3 of 17) 22654 ENSMUSG00000051379.12 ENSMUSG00000051379 ENSMUST00000056760 Flrt3 protein_coding Interval_621 chr1 8985220 8985604 + 0 NA intron (ENSMUSG00000025909.16, intron 4 of 4) protein_coding-intron (ENSMUSG00000025909.16, intron 4 of 4) -21791 ENSMUSG00000066693.2 ENSMUSG00000066693 ENSMUST00000085919 Gm7493 processed_pseudogene Interval_45680 chr13 56806667 56807322 + 0 NA intron (ENSMUSG00000021541.14, intron 5 of 10) protein_coding-intron (ENSMUSG00000021541.14, intron 6 of 11) -53167 ENSMUSG00000110086.1 ENSMUSG00000110086 ENSMUST00000210744 Gm45623 protein_coding Interval_38010 chr12 73931014 73931858 + 0 NA intron (ENSMUSG00000021109.13, intron 5 of 5) protein_coding-intron (ENSMUSG00000021109.13, intron 5 of 14) -6217 ENSMUSG00000114046.1 ENSMUSG00000114046 ENSMUST00000221833 Snapc1l protein_coding Interval_97683 chr2 142717397 142717601 + 0 NA intron (ENSMUSG00000038844.10, intron 17 of 26) protein_coding-intron (ENSMUSG00000038844.10, intron 17 of 25) -69397 ENSMUSG00000088134.1 ENSMUSG00000088134 ENSMUST00000157509 Gm22310 snoRNA Interval_166171 chr9 57230084 57230750 + 0 NA Intergenic Intergenic -6139 ENSMUSG00000070298.6 ENSMUSG00000070298 ENSMUST00000093837 Trcg1 protein_coding Interval_109833 chr3 148800360 148800565 + 0 NA Intergenic Intergenic 147402 ENSMUSG00000105934.1 ENSMUSG00000105934 ENSMUST00000196420 Gm43575 processed_pseudogene Interval_31427 chr11 100604437 100605780 + 0 NA intron (ENSMUSG00000014195.16, intron 1 of 13) protein_coding-intron (ENSMUSG00000014195.16, intron 1 of 13) 14523 ENSMUSG00000014195.16 ENSMUSG00000014195 ENSMUST00000132886 Dnajc7 protein_coding Interval_53173 chr14 54908803 54910005 + 0 NA promoter-TSS (ENSMUSG00000022199.12) protein_coding-promoter-TSS (ENSMUSG00000022199.12) 3728 ENSMUSG00000022199.12 ENSMUSG00000022199 ENSMUST00000226456 Slc22a17 protein_coding Interval_102549 chr3 27680331 27680618 + 0 NA intron (ENSMUSG00000039286.12, intron 1 of 4) protein_coding-intron (ENSMUSG00000039286.12, intron 1 of 25) 29924 ENSMUSG00000039286.12 ENSMUSG00000039286 ENSMUST00000193779 Fndc3b protein_coding Interval_71623 chr17 24942409 24943996 + 0 NA exon (ENSMUSG00000024165.9, exon 5 of 5) protein_coding-exon (ENSMUSG00000024165.9, exon 5 of 5) -6225 ENSMUSG00000024163.17 ENSMUSG00000024163 ENSMUST00000148360 Mapk8ip3 protein_coding Interval_44767 chr13 48430811 48431074 + 0 NA Intergenic Intergenic -22430 ENSMUSG00000114695.1 ENSMUSG00000114695 ENSMUST00000225569 Gm48648 lincRNA Interval_55835 chr14 101300847 101301285 + 0 NA Intergenic Intergenic 17999 ENSMUSG00000089041.1 ENSMUSG00000089041 ENSMUST00000158416 Gm26173 snoRNA Interval_136854 chr6 61430950 61432429 + 0 NA intron (ENSMUSG00000039578.17, intron 3 of 3) protein_coding-intron (ENSMUSG00000039578.17, intron 4 of 9) 31082 ENSMUSG00000107757.1 ENSMUSG00000107757 ENSMUST00000204456 Gm43898 processed_pseudogene Interval_50122 chr14 8115127 8115579 + 0 NA intron (ENSMUSG00000033885.15, intron 1 of 2) protein_coding-intron (ENSMUSG00000033885.15, intron 1 of 17) 17130 ENSMUSG00000033885.15 ENSMUSG00000033885 ENSMUST00000224462 Pxk protein_coding Interval_124200 chr5 40365115 40365341 + 0 NA Intergenic Intergenic 36790 ENSMUSG00000082938.1 ENSMUSG00000082938 ENSMUST00000118681 Gm2810 processed_pseudogene Interval_60357 chr15 73148429 73149301 + 0 NA intron (ENSMUSG00000036698.11, intron 1 of 18) protein_coding-intron (ENSMUSG00000036698.11, intron 1 of 18) 28982 ENSMUSG00000036698.11 ENSMUSG00000036698 ENSMUST00000230464 Ago2 protein_coding Interval_14586 chr10 36611077 36612327 + 0 NA TTS (ENSMUSG00000111231.1) TEC-TTS (ENSMUSG00000111231.1) 2372 ENSMUSG00000111231.1 ENSMUSG00000111231 ENSMUST00000214665 Gm47054 TEC Interval_80588 chr18 44458916 44459185 + 0 NA intron (ENSMUSG00000071856.10, intron 12 of 16) protein_coding-intron (ENSMUSG00000071856.10, intron 14 of 18) 78548 ENSMUSG00000024472.9 ENSMUSG00000024472 ENSMUST00000025350 Dcp2 protein_coding Interval_102399 chr3 23653562 23653847 + 0 NA Intergenic Intergenic 192654 ENSMUSG00000102203.1 ENSMUSG00000102203 ENSMUST00000194267 4930412E21Rik lincRNA Interval_90920 chr2 33477714 33479870 + 0 NA Intergenic Intergenic -10990 ENSMUSG00000086939.1 ENSMUSG00000086939 ENSMUST00000134014 Gm13530 lincRNA Interval_165286 chr9 46029292 46031350 + 0 NA intron (ENSMUSG00000034135.15, intron 1 of 24) protein_coding-intron (ENSMUSG00000034135.15, intron 1 of 22) -45538 ENSMUSG00000003131.7 ENSMUSG00000003131 ENSMUST00000214996 Pafah1b2 protein_coding Interval_54844 chr14 75781043 75781335 + 0 NA intron (ENSMUSG00000022003.7, intron 1 of 2) protein_coding-intron (ENSMUSG00000022003.7, intron 1 of 9) 5816 ENSMUSG00000022003.7 ENSMUSG00000022003 ENSMUST00000228379 Slc25a30 protein_coding Interval_71680 chr17 25382607 25383609 + 0 NA exon (ENSMUSG00000024112.16, exon 25 of 35) protein_coding-exon (ENSMUSG00000024112.16, exon 25 of 35) 6364 ENSMUSG00000024112.16 ENSMUSG00000024112 ENSMUST00000159052 Cacna1h protein_coding Interval_76131 chr17 75369185 75370386 + 0 NA intron (ENSMUSG00000001870.16, intron 32 of 34) protein_coding-intron (ENSMUSG00000001870.16, intron 31 of 33) -66111 ENSMUSG00000071042.12 ENSMUSG00000071042 ENSMUST00000234011 Rasgrp3 protein_coding Interval_158868 chr8 87560719 87561559 + 0 NA Intergenic Intergenic -2714 ENSMUSG00000069971.5 ENSMUSG00000069971 ENSMUST00000093342 4933402J07Rik protein_coding Interval_40029 chr12 100586933 100587178 + 0 NA intron (ENSMUSG00000021180.9, intron 7 of 16) protein_coding-intron (ENSMUSG00000021180.9, intron 7 of 17) -13079 ENSMUSG00000113687.1 ENSMUSG00000113687 ENSMUST00000223531 Gm49703 TEC Interval_90768 chr2 32497929 32498628 + 0 NA Intergenic Intergenic 10290 ENSMUSG00000103175.1 ENSMUSG00000103175 ENSMUST00000195599 Gm37169 TEC Interval_173497 chrX 96019571 96019770 + 0 NA Intergenic Intergenic -71467 ENSMUSG00000057421.12 ENSMUSG00000057421 ENSMUST00000139717 Las1l protein_coding Interval_27508 chr11 68299827 68300705 + 0 NA intron (ENSMUSG00000020902.12, intron 3 of 7) protein_coding-intron (ENSMUSG00000020902.12, intron 2 of 6) -29387 ENSMUSG00000084993.1 ENSMUSG00000084993 ENSMUST00000151817 Gm12305 sense_intronic Interval_22471 chr11 10729195 10730396 + 0 NA Intergenic Intergenic -352713 ENSMUSG00000084045.1 ENSMUSG00000084045 ENSMUST00000118697 Gm11997 processed_pseudogene Interval_116243 chr4 109000080 109001222 + 0 NA promoter-TSS (ENSMUSG00000053510.12) protein_coding-promoter-TSS (ENSMUSG00000053510.12) -1945 ENSMUSG00000088285.1 ENSMUSG00000088285 ENSMUST00000157660 Gm23589 snRNA Interval_71703 chr17 25567365 25568047 + 0 NA TTS (ENSMUSG00000024176.10) protein_coding-TTS (ENSMUSG00000024176.10) 2508 ENSMUSG00000024176.10 ENSMUSG00000024176 ENSMUST00000173447 Sox8 protein_coding Interval_7502 chr1 131879541 131880266 + 0 NA Intergenic Intergenic 12250 ENSMUSG00000026433.13 ENSMUSG00000026433 ENSMUST00000187084 Rab29 protein_coding Interval_523 chr1 6989953 6990553 + 0 NA Intergenic Intergenic -7964 ENSMUSG00000102534.1 ENSMUSG00000102534 ENSMUST00000193423 Gm37225 processed_pseudogene Interval_92191 chr2 55713536 55713860 + 0 NA Intergenic Intergenic -61850 ENSMUSG00000082971.1 ENSMUSG00000082971 ENSMUST00000120782 Gm13517 processed_pseudogene Interval_93392 chr2 72728481 72729025 + 0 NA intron (ENSMUSG00000085252.1, intron 6 of 6) lincRNA-intron (ENSMUSG00000085252.1, intron 6 of 6) 25243 ENSMUSG00000085252.1 ENSMUSG00000085252 ENSMUST00000124829 8430437L04Rik lincRNA Interval_135121 chr6 35758426 35759514 + 0 NA Intergenic Intergenic -143301 ENSMUSG00000107110.1 ENSMUSG00000107110 ENSMUST00000201009 Gm42931 lincRNA Interval_94571 chr2 92360076 92361185 + 0 NA TTS (ENSMUSG00000058318.15) protein_coding-TTS (ENSMUSG00000058318.15) 5891 ENSMUSG00000040434.16 ENSMUSG00000040434 ENSMUST00000124428 Large2 protein_coding Interval_136520 chr6 55122931 55123514 + 0 NA intron (ENSMUSG00000003476.16, intron 2 of 12) protein_coding-intron (ENSMUSG00000003476.16, intron 2 of 12) -5309 ENSMUSG00000003476.16 ENSMUSG00000003476 ENSMUST00000169777 Crhr2 protein_coding Interval_134346 chr6 25894928 25895220 + 0 NA Intergenic Intergenic -36352 ENSMUSG00000106799.1 ENSMUSG00000106799 ENSMUST00000201080 Gm20756 lincRNA Interval_135503 chr6 39705321 39706330 + 0 NA intron (ENSMUSG00000002413.15, intron 1 of 17) protein_coding-intron (ENSMUSG00000002413.15, intron 1 of 21) -40746 ENSMUSG00000002413.15 ENSMUSG00000002413 ENSMUST00000169647 Braf protein_coding Interval_22218 chr11 7227007 7227361 + 0 NA Intergenic Intergenic -13261 ENSMUSG00000020427.11 ENSMUSG00000020427 ENSMUST00000135887 Igfbp3 protein_coding Interval_7535 chr1 132067287 132068514 + 0 NA promoter-TSS (ENSMUSG00000059149.17) protein_coding-promoter-TSS (ENSMUSG00000059149.17) -25984 ENSMUSG00000059149.17 ENSMUSG00000059149 ENSMUST00000162628 Mfsd4a protein_coding Interval_84740 chr19 16063546 16064531 + 0 NA Intergenic Intergenic 38587 ENSMUSG00000117711.1 ENSMUSG00000117711 ENSMUST00000235413 Rpl37-ps1 processed_pseudogene Interval_97650 chr2 142086374 142086889 + 0 NA intron (ENSMUSG00000068205.14, intron 3 of 13) protein_coding-intron (ENSMUSG00000068205.14, intron 8 of 17) -89976 ENSMUSG00000068205.14 ENSMUSG00000068205 ENSMUST00000156619 Macrod2 protein_coding Interval_143817 chr7 16474501 16474816 + 0 NA exon (ENSMUSG00000001988.9, exon 3 of 12) protein_coding-exon (ENSMUSG00000001988.9, exon 3 of 12) 2845 ENSMUSG00000065893.1 ENSMUSG00000065893 ENSMUST00000083959 n-R5s151 rRNA Interval_88022 chr19 58023268 58023993 + 0 NA intron (ENSMUSG00000054843.9, intron 27 of 28) protein_coding-intron (ENSMUSG00000054843.9, intron 27 of 28) -27537 ENSMUSG00000093757.1 ENSMUSG00000093757 ENSMUST00000176631 Mir5623 miRNA Interval_72371 chr17 29450559 29452435 + 0 NA intron (ENSMUSG00000097125.2, intron 3 of 3) antisense-intron (ENSMUSG00000097125.2, intron 1 of 1) -6951 ENSMUSG00000117427.1 ENSMUSG00000117427 ENSMUST00000234634 Gm36199 lincRNA Interval_24489 chr11 33660025 33660729 + 0 NA intron (ENSMUSG00000053519.17, intron 1 of 8) protein_coding-intron (ENSMUSG00000053519.17, intron 1 of 7) -35517 ENSMUSG00000085240.1 ENSMUSG00000085240 ENSMUST00000136083 Gm12119 antisense Interval_123492 chr5 32909801 32910850 + 0 NA intron (ENSMUSG00000037426.18, intron 2 of 5) protein_coding-intron (ENSMUSG00000037426.18, intron 17 of 32) -3306 ENSMUSG00000089080.1 ENSMUSG00000089080 ENSMUST00000158455 Gm24003 snRNA Interval_101573 chr3 6864607 6865050 + 0 NA Intergenic Intergenic -112440 ENSMUSG00000089220.1 ENSMUSG00000089220 ENSMUST00000158595 Gm22074 snoRNA Interval_174560 chrX 157809395 157810081 + 0 NA Intergenic Intergenic -8697 ENSMUSG00000047485.6 ENSMUSG00000047485 ENSMUST00000087157 Klhl34 protein_coding Interval_99275 chr2 158609420 158609718 + 0 NA intron (ENSMUSG00000086496.1, intron 1 of 2) processed_transcript-intron (ENSMUSG00000086496.1, intron 1 of 2) 1021 ENSMUSG00000086496.1 ENSMUSG00000086496 ENSMUST00000155319 Gm14204 processed_transcript Interval_2581 chr1 40823790 40824151 + 0 NA intron (ENSMUSG00000079588.3, intron 3 of 4) protein_coding-intron (ENSMUSG00000079588.3, intron 3 of 4) 18369 ENSMUSG00000079588.3 ENSMUSG00000079588 ENSMUST00000114765 Tmem182 protein_coding Interval_101185 chr2 179131956 179132206 + 0 NA Intergenic Intergenic -45344 ENSMUSG00000061897.5 ENSMUSG00000061897 ENSMUST00000118761 Gm14292 processed_pseudogene Interval_142075 chr6 136977322 136977970 + 0 NA Intergenic Intergenic -8950 ENSMUSG00000107734.1 ENSMUSG00000107734 ENSMUST00000203175 Gm30055 TEC Interval_6356 chr1 106232686 106233404 + 0 NA intron (ENSMUSG00000044340.7, intron 1 of 16) protein_coding-intron (ENSMUSG00000044340.7, intron 1 of 16) 13731 ENSMUSG00000103291.1 ENSMUSG00000103291 ENSMUST00000194600 Gm38235 TEC Interval_54116 chr14 65464516 65465437 + 0 NA Intergenic Intergenic -39816 ENSMUSG00000045731.6 ENSMUSG00000045731 ENSMUST00000224594 Pnoc protein_coding Interval_130340 chr5 126128534 126128828 + 0 NA Intergenic Intergenic -102208 ENSMUSG00000105189.1 ENSMUSG00000105189 ENSMUST00000200064 Gm7774 processed_pseudogene Interval_109078 chr3 135601978 135602168 + 0 NA exon (ENSMUSG00000028163.17, exon 1 of 1) protein_coding-exon (ENSMUSG00000028163.17, exon 1 of 1) 1786 ENSMUSG00000028163.17 ENSMUSG00000028163 ENSMUST00000196246 Nfkb1 protein_coding Interval_79526 chr18 32863810 32864070 + 0 NA intron (ENSMUSG00000038299.16, intron 6 of 7) protein_coding-intron (ENSMUSG00000038299.16, intron 21 of 22) 10833 ENSMUSG00000038299.16 ENSMUSG00000038299 ENSMUST00000234798 Wdr36 protein_coding Interval_107544 chr3 108398587 108399026 + 0 NA intron (ENSMUSG00000068740.13, intron 1 of 17) protein_coding-intron (ENSMUSG00000068740.13, intron 16 of 33) 3783 ENSMUSG00000068740.13 ENSMUSG00000068740 ENSMUST00000147565 Celsr2 protein_coding Interval_115589 chr4 101155757 101156560 + 0 NA intron (ENSMUSG00000028530.14, intron 22 of 24) protein_coding-intron (ENSMUSG00000028530.14, intron 22 of 24) -30606 ENSMUSG00000077677.1 ENSMUSG00000077677 ENSMUST00000104489 Gm24468 snRNA Interval_47499 chr13 85639181 85639796 + 0 NA Intergenic Intergenic -65910 ENSMUSG00000114506.1 ENSMUSG00000114506 ENSMUST00000224841 Gm5666 processed_pseudogene Interval_35474 chr12 22944905 22945694 + 0 NA Intergenic Intergenic 15007 ENSMUSG00000113670.1 ENSMUSG00000113670 ENSMUST00000222206 Gm49686 transcribed_unprocessed_pseudogene Interval_60966 chr15 78339823 78340625 + 0 NA intron (ENSMUSG00000071713.6, intron 5 of 14) protein_coding-intron (ENSMUSG00000071713.6, intron 4 of 13) -8375 ENSMUSG00000099059.1 ENSMUSG00000099059 ENSMUST00000183523 Mir7676-2 miRNA Interval_121356 chr4 155207250 155209423 + 0 NA intron (ENSMUSG00000029050.15, intron 2 of 7) protein_coding-intron (ENSMUSG00000029050.15, intron 1 of 6) -20040 ENSMUSG00000029050.15 ENSMUSG00000029050 ENSMUST00000030917 Ski protein_coding Interval_152599 chr7 135028465 135029099 + 0 NA intron (ENSMUSG00000058325.6, intron 29 of 51) protein_coding-intron (ENSMUSG00000058325.6, intron 29 of 51) -90504 ENSMUSG00000073805.5 ENSMUSG00000073805 ENSMUST00000210826 Insyn2a protein_coding Interval_90919 chr2 33471671 33471884 + 0 NA Intergenic Intergenic -6695 ENSMUSG00000026788.13 ENSMUSG00000026788 ENSMUST00000126442 Zbtb43 protein_coding Interval_91454 chr2 38983474 38983690 + 0 NA Intergenic Intergenic 9635 ENSMUSG00000084184.1 ENSMUSG00000084184 ENSMUST00000122466 Gm13474 unprocessed_pseudogene Interval_117074 chr4 119376516 119376793 + 0 NA intron (ENSMUSG00000028637.16, intron 1 of 6) protein_coding-intron (ENSMUSG00000028637.16, intron 1 of 6) -2901 ENSMUSG00000028637.16 ENSMUSG00000028637 ENSMUST00000238559 Ccdc30 protein_coding Interval_62270 chr15 89345592 89345885 + 0 NA Intergenic Intergenic 9409 ENSMUSG00000022614.8 ENSMUSG00000022614 ENSMUST00000229111 Lmf2 protein_coding Interval_4137 chr1 70270091 70270552 + 0 NA intron (ENSMUSG00000053153.14, intron 3 of 7) protein_coding-intron (ENSMUSG00000053153.14, intron 12 of 16) 42590 ENSMUSG00000103052.1 ENSMUSG00000103052 ENSMUST00000194431 Gm38272 TEC Interval_1871 chr1 34220232 34220735 + 0 NA intron (ENSMUSG00000026131.20, intron 39 of 83) protein_coding-intron (ENSMUSG00000026131.20, intron 54 of 97) -42037 ENSMUSG00000096992.3 ENSMUSG00000096992 ENSMUST00000187268 Gm26788 processed_transcript Interval_138155 chr6 85570484 85570678 + 0 NA Intergenic Intergenic -17065 ENSMUSG00000063810.7 ENSMUSG00000063810 ENSMUST00000201221 Alms1 protein_coding Interval_45229 chr13 53315676 53317085 + 0 NA Intergenic Intergenic -40722 ENSMUSG00000021464.14 ENSMUSG00000021464 ENSMUST00000149299 Ror2 protein_coding Interval_15363 chr10 45091124 45092850 + 0 NA intron (ENSMUSG00000019849.11, intron 3 of 14) protein_coding-intron (ENSMUSG00000019849.11, intron 3 of 14) 3721 ENSMUSG00000077082.1 ENSMUSG00000077082 ENSMUST00000103894 Gm23766 miRNA Interval_152909 chr7 139659823 139660360 + 0 NA promoter-TSS (ENSMUSG00000083626.1) processed_pseudogene-promoter-TSS (ENSMUSG00000083626.1) 64 ENSMUSG00000083626.1 ENSMUSG00000083626 ENSMUST00000118750 Gm4459 processed_pseudogene Interval_103084 chr3 35133212 35134182 + 0 NA Intergenic Intergenic 142434 ENSMUSG00000105651.1 ENSMUSG00000105651 ENSMUST00000198307 1700017M07Rik lincRNA Interval_23095 chr11 19923974 19926610 + 0 NA intron (ENSMUSG00000045671.17, intron 1 of 6) protein_coding-intron (ENSMUSG00000045671.17, intron 1 of 5) -29278 ENSMUSG00000045671.17 ENSMUSG00000045671 ENSMUST00000123036 Spred2 protein_coding Interval_47384 chr13 82694033 82694902 + 0 NA Intergenic Intergenic 3866 ENSMUSG00000106655.1 ENSMUSG00000106655 ENSMUST00000198795 Mir3961 miRNA Interval_48256 chr13 97482475 97483188 + 0 NA promoter-TSS (ENSMUSG00000078952.9) lincRNA-promoter-TSS (ENSMUSG00000078952.9) -124 ENSMUSG00000078952.9 ENSMUSG00000078952 ENSMUST00000180371 Lncenc1 lincRNA Interval_134654 chr6 30167102 30167948 + 0 NA Intergenic Intergenic -1533 ENSMUSG00000076361.1 ENSMUSG00000076361 ENSMUST00000102406 Mir182 miRNA Interval_25543 chr11 49683989 49685907 + 0 NA intron (ENSMUSG00000020362.13, intron 6 of 11) protein_coding-intron (ENSMUSG00000020362.13, intron 6 of 11) -2223 ENSMUSG00000020362.13 ENSMUSG00000020362 ENSMUST00000151090 Cnot6 protein_coding Interval_63495 chr15 101452960 101453926 + 0 NA intron (ENSMUSG00000063971.7, intron 4 of 4) protein_coding-intron (ENSMUSG00000063971.7, intron 4 of 4) 5699 ENSMUSG00000063971.7 ENSMUSG00000063971 ENSMUST00000023781 Krt88 protein_coding Interval_126491 chr5 89050983 89051994 + 0 NA intron (ENSMUSG00000060961.16, intron 6 of 24) protein_coding-intron (ENSMUSG00000060961.16, intron 6 of 24) 165002 ENSMUSG00000060961.16 ENSMUSG00000060961 ENSMUST00000134303 Slc4a4 protein_coding Interval_165734 chr9 51990786 51991294 + 0 NA Intergenic Intergenic 12241 ENSMUSG00000098076.1 ENSMUSG00000098076 ENSMUST00000182467 Gm6981 processed_pseudogene Interval_29814 chr11 87016261 87016656 + 0 NA Intergenic Intergenic -19195 ENSMUSG00000088816.1 ENSMUSG00000088816 ENSMUST00000158191 Gm22387 scaRNA Interval_36665 chr12 51857700 51859049 + 0 NA Intergenic Intergenic -17753 ENSMUSG00000112746.1 ENSMUSG00000112746 ENSMUST00000218295 Gm19309 processed_pseudogene Interval_58009 chr15 25992955 25994034 + 0 NA intron (ENSMUSG00000052253.6, intron 3 of 4) protein_coding-intron (ENSMUSG00000052253.6, intron 4 of 5) 9128 ENSMUSG00000052253.6 ENSMUSG00000052253 ENSMUST00000227093 Zfp622 protein_coding Interval_76042 chr17 74534874 74535503 + 0 NA intron (ENSMUSG00000024073.16, intron 1 of 72) protein_coding-intron (ENSMUSG00000024073.16, intron 1 of 72) -7544 ENSMUSG00000117358.1 ENSMUSG00000117358 ENSMUST00000234285 Gm31645 processed_transcript Interval_69161 chr16 91059684 91059974 + 0 NA intron (ENSMUSG00000039851.11, intron 1 of 1) protein_coding-intron (ENSMUSG00000039851.11, intron 2 of 2) 15173 ENSMUSG00000085398.1 ENSMUSG00000085398 ENSMUST00000147848 4931406G06Rik antisense Interval_128464 chr5 113461592 113462543 + 0 NA Intergenic Intergenic 104773 ENSMUSG00000053873.1 ENSMUSG00000053873 ENSMUST00000066573 Aym1 protein_coding Interval_173091 chrX 71364133 71365346 + 0 NA promoter-TSS (ENSMUSG00000015214.14) protein_coding-promoter-TSS (ENSMUSG00000015214.14) -5073 ENSMUSG00000015214.14 ENSMUSG00000015214 ENSMUST00000130179 Mtmr1 protein_coding Interval_110460 chr3 158556266 158556957 + 0 NA intron (ENSMUSG00000028176.13, intron 1 of 24) protein_coding-intron (ENSMUSG00000028176.13, intron 1 of 27) 5523 ENSMUSG00000028176.13 ENSMUSG00000028176 ENSMUST00000198284 Lrrc7 protein_coding Interval_44801 chr13 48731494 48733280 + 0 NA Intergenic Intergenic 31194 ENSMUSG00000113297.1 ENSMUSG00000113297 ENSMUST00000222192 Rpl17-ps6 processed_pseudogene Interval_14348 chr10 31302990 31304551 + 0 NA Intergenic Intergenic -9635 ENSMUSG00000000295.13 ENSMUSG00000000295 ENSMUST00000159659 Hddc2 protein_coding Interval_91772 chr2 49450968 49453030 + 0 NA intron (ENSMUSG00000069495.12, intron 1 of 13) protein_coding-intron (ENSMUSG00000069495.12, intron 1 of 13) -53484 ENSMUSG00000077769.1 ENSMUSG00000077769 ENSMUST00000104581 Gm25215 snoRNA Interval_20600 chr10 119296091 119296373 + 0 NA Intergenic Intergenic -24002 ENSMUSG00000112155.1 ENSMUSG00000112155 ENSMUST00000218762 4930477N07Rik lincRNA Interval_115513 chr4 99610309 99610524 + 0 NA Intergenic Intergenic 6106 ENSMUSG00000083698.1 ENSMUSG00000083698 ENSMUST00000119752 Gm12687 processed_pseudogene Interval_14637 chr10 37376555 37376869 + 0 NA intron (ENSMUSG00000097742.1, intron 2 of 2) lincRNA-intron (ENSMUSG00000097742.1, intron 2 of 2) 39226 ENSMUSG00000097742.1 ENSMUSG00000097742 ENSMUST00000181602 Gm26535 lincRNA Interval_141604 chr6 130925838 130926058 + 0 NA Intergenic Intergenic 14460 ENSMUSG00000107522.1 ENSMUSG00000107522 ENSMUST00000203835 Gm44988 processed_pseudogene Interval_24572 chr11 34726383 34727557 + 0 NA intron (ENSMUSG00000020143.15, intron 6 of 26) protein_coding-intron (ENSMUSG00000020143.15, intron 6 of 51) 96981 ENSMUSG00000069910.2 ENSMUSG00000069910 ENSMUST00000148387 Spdl1 protein_coding Interval_28403 chr11 75678802 75680152 + 0 NA promoter-TSS (ENSMUSG00000017776.15) protein_coding-promoter-TSS (ENSMUSG00000017776.15) -65 ENSMUSG00000017776.15 ENSMUSG00000017776 ENSMUST00000147718 Crk protein_coding Interval_90209 chr2 29046064 29046459 + 0 NA intron (ENSMUSG00000079502.8, intron 1 of 6) protein_coding-intron (ENSMUSG00000079502.8, intron 1 of 5) -6901 ENSMUSG00000079502.8 ENSMUSG00000079502 ENSMUST00000113843 Cfap77 protein_coding Interval_143843 chr7 16660993 16661402 + 0 NA Intergenic Intergenic -9417 ENSMUSG00000108307.1 ENSMUSG00000108307 ENSMUST00000206683 Ceacam-ps1 transcribed_unprocessed_pseudogene Interval_49400 chr13 111741917 111742500 + 0 NA Intergenic Intergenic 9165 ENSMUSG00000021754.17 ENSMUSG00000021754 ENSMUST00000145055 Map3k1 protein_coding Interval_25273 chr11 46041550 46042374 + 0 NA Intergenic Intergenic 5522 ENSMUSG00000082870.1 ENSMUSG00000082870 ENSMUST00000117047 Gm12165 processed_pseudogene Interval_108641 chr3 129708017 129708612 + 0 NA intron (ENSMUSG00000028017.7, intron 8 of 17) protein_coding-intron (ENSMUSG00000028017.7, intron 13 of 23) 16763 ENSMUSG00000028017.7 ENSMUSG00000028017 ENSMUST00000198093 Egf protein_coding Interval_124010 chr5 37180404 37180851 + 0 NA intron (ENSMUSG00000117286.1, intron 2 of 8) protein_coding-intron (ENSMUSG00000117286.1, intron 2 of 7) -66658 ENSMUSG00000029121.16 ENSMUSG00000029121 ENSMUST00000200834 Crmp1 protein_coding Interval_3819 chr1 63247027 63248604 + 0 NA TTS (ENSMUSG00000102536.1) TEC-TTS (ENSMUSG00000102536.1) 684 ENSMUSG00000102536.1 ENSMUSG00000102536 ENSMUST00000194370 1700039I01Rik TEC Interval_43163 chr13 24783222 24783477 + 0 NA Intergenic Intergenic -18671 ENSMUSG00000019132.11 ENSMUSG00000019132 ENSMUST00000155575 BC005537 protein_coding Interval_49488 chr13 112384286 112385008 + 0 NA TTS (ENSMUSG00000049985.15) protein_coding-TTS (ENSMUSG00000049985.15) -16802 ENSMUSG00000114536.1 ENSMUSG00000114536 ENSMUST00000224393 Gm48837 antisense Interval_8949 chr1 152650933 152651507 + 0 NA intron (ENSMUSG00000026482.13, intron 2 of 18) protein_coding-intron (ENSMUSG00000026482.13, intron 2 of 17) 36281 ENSMUSG00000086145.1 ENSMUSG00000086145 ENSMUST00000139309 Gm15479 sense_intronic Interval_33130 chr11 114649449 114651020 + 0 NA Intergenic Intergenic -14374 ENSMUSG00000083769.1 ENSMUSG00000083769 ENSMUST00000120766 Gm11689 processed_pseudogene Interval_92821 chr2 65931479 65932325 + 0 NA promoter-TSS (ENSMUSG00000044647.16) protein_coding-promoter-TSS (ENSMUSG00000044647.16) 1765 ENSMUSG00000044647.16 ENSMUSG00000044647 ENSMUST00000112394 Csrnp3 protein_coding Interval_42604 chr13 16622371 16622754 + 0 NA Intergenic Intergenic 16928 ENSMUSG00000113862.1 ENSMUSG00000113862 ENSMUST00000221660 Gm7537 processed_pseudogene Interval_132420 chr5 144831796 144832318 + 0 NA intron (ENSMUSG00000045482.16, intron 51 of 70) protein_coding-intron (ENSMUSG00000045482.16, intron 50 of 69) 57632 ENSMUSG00000088685.1 ENSMUSG00000088685 ENSMUST00000158060 Gm23995 snoRNA Interval_84716 chr19 15905793 15906018 + 0 NA exon (ENSMUSG00000024640.9, exon 9 of 9) protein_coding-exon (ENSMUSG00000024640.9, exon 9 of 9) -37705 ENSMUSG00000090147.1 ENSMUSG00000090147 ENSMUST00000159873 Gm3329 processed_pseudogene Interval_98450 chr2 152439123 152439314 + 0 NA intron (ENSMUSG00000032680.11, intron 5 of 10) protein_coding-intron (ENSMUSG00000032680.11, intron 6 of 11) 11583 ENSMUSG00000032680.11 ENSMUSG00000032680 ENSMUST00000128737 6820408C15Rik protein_coding Interval_72039 chr17 27675213 27675795 + 0 NA intron (ENSMUSG00000040276.15, intron 1 of 9) protein_coding-intron (ENSMUSG00000040276.15, intron 1 of 9) 19916 ENSMUSG00000040276.15 ENSMUSG00000040276 ENSMUST00000231854 Pacsin1 protein_coding Interval_52935 chr14 52123914 52124351 + 0 NA intron (ENSMUSG00000057132.16, intron 6 of 21) protein_coding-intron (ENSMUSG00000057132.16, intron 6 of 24) -20139 ENSMUSG00000060373.15 ENSMUSG00000060373 ENSMUST00000228786 Hnrnpc protein_coding Interval_159995 chr8 105648791 105649100 + 0 NA intron (ENSMUSG00000005698.15, intron 2 of 9) protein_coding-intron (ENSMUSG00000005698.15, intron 2 of 11) -11595 ENSMUSG00000098120.1 ENSMUSG00000098120 ENSMUST00000182046 Gm5914 lincRNA Interval_86737 chr19 43498556 43499502 + 0 NA TTS (ENSMUSG00000025190.13) protein_coding-TTS (ENSMUSG00000025190.13) 16836 ENSMUSG00000025190.13 ENSMUSG00000025190 ENSMUST00000124954 Got1 protein_coding Interval_96902 chr2 129318112 129318512 + 0 NA Intergenic Intergenic -2833 ENSMUSG00000065057.1 ENSMUSG00000065057 ENSMUST00000083123 Gm25703 snRNA Interval_161776 chr8 122709137 122709922 + 0 NA intron (ENSMUSG00000092329.1, intron 1 of 15) protein_coding-intron (ENSMUSG00000092329.1, intron 1 of 15) -10627 ENSMUSG00000006362.16 ENSMUSG00000006362 ENSMUST00000148630 Cbfa2t3 protein_coding Interval_21177 chr10 127059581 127060776 + 0 NA promoter-TSS (ENSMUSG00000040502.5) protein_coding-promoter-TSS (ENSMUSG00000040502.5) 6 ENSMUSG00000040502.5 ENSMUSG00000040502 ENSMUST00000040307 Marchf9 protein_coding Interval_55099 chr14 78045738 78045928 + 0 NA intron (ENSMUSG00000115517.1, intron 2 of 2) lincRNA-intron (ENSMUSG00000115517.1, intron 2 of 2) -24884 ENSMUSG00000092272.1 ENSMUSG00000092272 ENSMUST00000174283 Gm19301 lincRNA Interval_167762 chr9 72591058 72591350 + 0 NA intron (ENSMUSG00000037674.15, intron 3 of 5) protein_coding-intron (ENSMUSG00000037674.15, intron 2 of 8) -3719 ENSMUSG00000102672.1 ENSMUSG00000102672 ENSMUST00000192251 Gm37105 TEC Interval_150893 chr7 116210095 116211112 + 0 NA intron (ENSMUSG00000045659.18, intron 3 of 18) protein_coding-intron (ENSMUSG00000045659.18, intron 3 of 26) 72140 ENSMUSG00000108650.1 ENSMUSG00000108650 ENSMUST00000205675 Gm44867 sense_intronic Interval_117781 chr4 126191786 126192202 + 0 NA intron (ENSMUSG00000043962.16, intron 1 of 2) protein_coding-intron (ENSMUSG00000043962.16, intron 1 of 10) 9283 ENSMUSG00000084504.1 ENSMUSG00000084504 ENSMUST00000122555 Gm25323 snRNA Interval_10983 chr1 177753354 177754201 + 0 NA TTS (ENSMUSG00000015962.5) protein_coding-TTS (ENSMUSG00000015962.5) 23963 ENSMUSG00000015962.5 ENSMUSG00000015962 ENSMUST00000016106 1700016C15Rik protein_coding Interval_82746 chr18 76374497 76375096 + 0 NA Intergenic Intergenic 52972 ENSMUSG00000117816.1 ENSMUSG00000117816 ENSMUST00000235901 Gm50360 processed_pseudogene Interval_134731 chr6 31037628 31038872 + 0 NA Intergenic Intergenic 24497 ENSMUSG00000065610.1 ENSMUSG00000065610 ENSMUST00000083676 Mir29a miRNA Interval_162083 chr8 124970358 124970950 + 0 NA Intergenic Intergenic -21330 ENSMUSG00000031987.6 ENSMUSG00000031987 ENSMUST00000034469 Egln1 protein_coding Interval_128563 chr5 114042602 114042853 + 0 NA intron (ENSMUSG00000042078.14, intron 1 of 4) protein_coding-intron (ENSMUSG00000042078.14, intron 8 of 15) -22787 ENSMUSG00000029592.11 ENSMUSG00000029592 ENSMUST00000198457 Usp30 protein_coding Interval_30496 chr11 94741574 94742599 + 0 NA exon (ENSMUSG00000020870.7, exon 1 of 1) protein_coding-exon (ENSMUSG00000020870.7, exon 1 of 1) 304 ENSMUSG00000020870.7 ENSMUSG00000020870 ENSMUST00000188741 Cdc34b protein_coding Interval_84992 chr19 21051277 21051586 + 0 NA Intergenic Intergenic -53279 ENSMUSG00000118047.1 ENSMUSG00000118047 ENSMUST00000237768 4930554I06Rik lincRNA Interval_5503 chr1 89344464 89345120 + 0 NA intron (ENSMUSG00000101288.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000101288.1, intron 1 of 2) 13352 ENSMUSG00000101288.1 ENSMUSG00000101288 ENSMUST00000190308 Gm28342 lincRNA Interval_146550 chr7 46770145 46771012 + 0 NA intron (ENSMUSG00000014418.16, intron 16 of 22) protein_coding-intron (ENSMUSG00000014418.16, intron 16 of 22) -1486 ENSMUSG00000014418.16 ENSMUSG00000014418 ENSMUST00000123725 Hps5 protein_coding Interval_130903 chr5 133815505 133815745 + 0 NA Intergenic Intergenic 26894 ENSMUSG00000106067.1 ENSMUSG00000106067 ENSMUST00000198842 Gm7902 processed_pseudogene Interval_53812 chr14 62166592 62167614 + 0 NA intron (ENSMUSG00000115531.1, intron 1 of 3) lincRNA-intron (ENSMUSG00000115531.1, intron 1 of 3) 4023 ENSMUSG00000115531.1 ENSMUSG00000115531 ENSMUST00000226702 Gm35419 lincRNA Interval_56279 chr14 116142635 116142880 + 0 NA intron (ENSMUSG00000022112.14, intron 7 of 7) protein_coding-intron (ENSMUSG00000022112.14, intron 7 of 7) -271479 ENSMUSG00000093497.1 ENSMUSG00000093497 ENSMUST00000176344 Gm20713 processed_transcript Interval_2347 chr1 38252854 38253145 + 0 NA intron (ENSMUSG00000037138.18, intron 10 of 22) protein_coding-intron (ENSMUSG00000037138.18, intron 10 of 22) 13299 ENSMUSG00000085391.1 ENSMUSG00000085391 ENSMUST00000133299 Gm16150 antisense Interval_115538 chr4 100407499 100408049 + 0 NA intron (ENSMUSG00000035305.5, intron 4 of 8) protein_coding-intron (ENSMUSG00000035305.5, intron 4 of 8) -45715 ENSMUSG00000080967.1 ENSMUSG00000080967 ENSMUST00000121588 Gm12706 processed_pseudogene Interval_31143 chr11 98399594 98400781 + 0 NA intron (ENSMUSG00000038208.13, intron 1 of 6) protein_coding-intron (ENSMUSG00000038208.13, intron 1 of 7) 248 ENSMUSG00000038208.13 ENSMUSG00000038208 ENSMUST00000125348 Pgap3 protein_coding Interval_84492 chr19 11823200 11824214 + 0 NA Intergenic Intergenic -4814 ENSMUSG00000041488.16 ENSMUSG00000041488 ENSMUST00000209304 Stx3 protein_coding Interval_47946 chr13 94550835 94551034 + 0 NA intron (ENSMUSG00000021686.6, intron 11 of 11) protein_coding-intron (ENSMUSG00000021686.6, intron 26 of 26) 33772 ENSMUSG00000084423.1 ENSMUSG00000084423 ENSMUST00000122474 Gm25109 miRNA Interval_17857 chr10 80435963 80436612 + 0 NA Intergenic Intergenic -5302 ENSMUSG00000020167.14 ENSMUSG00000020167 ENSMUST00000156244 Tcf3 protein_coding Interval_162372 chr8 127511478 127513267 + 0 NA intron (ENSMUSG00000025812.18, intron 22 of 24) protein_coding-intron (ENSMUSG00000025812.18, intron 21 of 23) -49063 ENSMUSG00000090074.1 ENSMUSG00000090074 ENSMUST00000161478 Gm6921 processed_pseudogene Interval_111487 chr4 22092111 22092972 + 0 NA Intergenic Intergenic 24991 ENSMUSG00000082490.1 ENSMUSG00000082490 ENSMUST00000117612 Gm11880 processed_pseudogene Interval_55799 chr14 100263118 100263356 + 0 NA intron (ENSMUSG00000072294.5, intron 1 of 1) protein_coding-intron (ENSMUSG00000072294.5, intron 1 of 1) -22928 ENSMUSG00000110273.1 ENSMUSG00000110273 ENSMUST00000211525 Gm41231 lincRNA Interval_91515 chr2 40321286 40321668 + 0 NA Intergenic Intergenic 22960 ENSMUSG00000088512.1 ENSMUSG00000088512 ENSMUST00000157887 Gm24467 snoRNA Interval_113778 chr4 58542504 58543402 + 0 NA intron (ENSMUSG00000038668.14, intron 1 of 3) protein_coding-intron (ENSMUSG00000038668.14, intron 1 of 3) 5448 ENSMUSG00000038668.14 ENSMUSG00000038668 ENSMUST00000145361 Lpar1 protein_coding Interval_58888 chr15 39743266 39744249 + 0 NA Intergenic Intergenic -2177 ENSMUSG00000022303.9 ENSMUSG00000022303 ENSMUST00000227792 Dcstamp protein_coding Interval_78714 chr18 18713189 18713893 + 0 NA Intergenic Intergenic -419676 ENSMUSG00000117378.1 ENSMUSG00000117378 ENSMUST00000234128 Gm31086 lincRNA Interval_28193 chr11 74121790 74121998 + 0 NA exon (ENSMUSG00000070380.2, exon 1 of 1) protein_coding-exon (ENSMUSG00000070380.2, exon 1 of 1) 8182 ENSMUSG00000070380.2 ENSMUSG00000070380 ENSMUST00000079827 Olfr401 protein_coding Interval_84952 chr19 19944960 19946162 + 0 NA Intergenic Intergenic -68998 ENSMUSG00000118167.1 ENSMUSG00000118167 ENSMUST00000235148 Gm50216 lincRNA Interval_33186 chr11 115080882 115081624 + 0 NA Intergenic Intergenic -19076 ENSMUSG00000048498.7 ENSMUSG00000048498 ENSMUST00000062787 Cd300e protein_coding Interval_88789 chr2 10784354 10785735 + 0 NA Intergenic Intergenic -108665 ENSMUSG00000103237.1 ENSMUSG00000103237 ENSMUST00000192439 Gm18547 processed_pseudogene Interval_107935 chr3 116998165 116998565 + 0 NA TTS (ENSMUSG00000105221.1) processed_pseudogene-TTS (ENSMUSG00000105221.1) 1221 ENSMUSG00000105221.1 ENSMUSG00000105221 ENSMUST00000198431 Gm9332 processed_pseudogene Interval_61367 chr15 81127118 81127897 + 0 NA intron (ENSMUSG00000042292.18, intron 1 of 13) protein_coding-intron (ENSMUSG00000042292.18, intron 1 of 3) -11662 ENSMUSG00000116321.1 ENSMUSG00000116321 ENSMUST00000230595 Gm49522 TEC Interval_42532 chr13 14641085 14641841 + 0 NA intron (ENSMUSG00000015671.11, intron 6 of 6) protein_coding-intron (ENSMUSG00000015671.11, intron 6 of 6) 11186 ENSMUSG00000039182.6 ENSMUSG00000039182 ENSMUST00000222052 AW209491 protein_coding Interval_28488 chr11 76303556 76304474 + 0 NA intron (ENSMUSG00000020844.6, intron 1 of 7) protein_coding-intron (ENSMUSG00000020844.6, intron 1 of 7) 54803 ENSMUSG00000038046.4 ENSMUSG00000038046 ENSMUST00000155526 Mrm3 protein_coding Interval_115830 chr4 105112569 105112899 + 0 NA Intergenic Intergenic -2844 ENSMUSG00000028518.8 ENSMUSG00000028518 ENSMUST00000030243 Prkaa2 protein_coding Interval_141745 chr6 134173382 134174022 + 0 NA intron (ENSMUSG00000030199.16, intron 2 of 4) protein_coding-intron (ENSMUSG00000030199.16, intron 2 of 7) -1695 ENSMUSG00000091438.1 ENSMUSG00000091438 ENSMUST00000164616 Gm17088 antisense Interval_69126 chr16 90820251 90820653 + 0 NA Intergenic Intergenic -6267 ENSMUSG00000039903.18 ENSMUSG00000039903 ENSMUST00000154180 Eva1c protein_coding Interval_38827 chr12 83037968 83038872 + 0 NA intron (ENSMUSG00000021219.16, intron 3 of 16) protein_coding-intron (ENSMUSG00000021219.16, intron 2 of 14) 60454 ENSMUSG00000102029.1 ENSMUSG00000102029 ENSMUST00000187556 Gm29530 antisense Interval_114332 chr4 73468204 73468540 + 0 NA Intergenic Intergenic 30105 ENSMUSG00000081871.1 ENSMUSG00000081871 ENSMUST00000117277 Gm11488 processed_pseudogene Interval_154311 chr8 14324153 14325331 + 0 NA intron (ENSMUSG00000047495.15, intron 2 of 14) protein_coding-intron (ENSMUSG00000047495.15, intron 2 of 14) -25436 ENSMUSG00000106670.1 ENSMUSG00000106670 ENSMUST00000199602 Gm44347 miRNA Interval_79223 chr18 25861290 25862420 + 0 NA Intergenic Intergenic 22778 ENSMUSG00000117410.1 ENSMUSG00000117410 ENSMUST00000234817 Gm50304 lincRNA Interval_77540 chr17 91106566 91107115 + 0 NA TTS (ENSMUSG00000098740.1) miRNA-TTS (ENSMUSG00000098740.1) 585 ENSMUSG00000117572.1 ENSMUSG00000117572 ENSMUST00000234080 Gm9410 processed_pseudogene Interval_146891 chr7 55404557 55404836 + 0 NA Intergenic Intergenic -57373 ENSMUSG00000108744.1 ENSMUSG00000108744 ENSMUST00000205703 Gm9367 processed_pseudogene Interval_115856 chr4 105252881 105253369 + 0 NA Intergenic Intergenic 95778 ENSMUSG00000028517.8 ENSMUSG00000028517 ENSMUST00000064139 Plpp3 protein_coding Interval_141593 chr6 130172892 130173122 + 0 NA Intergenic Intergenic -3746 ENSMUSG00000094579.1 ENSMUSG00000094579 ENSMUST00000178922 Gm23552 snRNA Interval_65688 chr16 25394964 25395210 + 0 NA intron (ENSMUSG00000048399.4, intron 4 of 5) protein_coding-intron (ENSMUSG00000048399.4, intron 4 of 5) 48186 ENSMUSG00000116828.1 ENSMUSG00000116828 ENSMUST00000232460 Gm18896 processed_pseudogene Interval_115841 chr4 105191135 105191332 + 0 NA intron (ENSMUSG00000028517.8, intron 1 of 5) protein_coding-intron (ENSMUSG00000028517.8, intron 1 of 5) 33886 ENSMUSG00000028517.8 ENSMUSG00000028517 ENSMUST00000064139 Plpp3 protein_coding Interval_17524 chr10 77503322 77503763 + 0 NA intron (ENSMUSG00000032977.9, intron 3 of 5) protein_coding-intron (ENSMUSG00000032977.9, intron 3 of 5) 12030 ENSMUSG00000032977.9 ENSMUSG00000032977 ENSMUST00000217681 Fam207a protein_coding Interval_166112 chr9 56795456 56797315 + 0 NA promoter-TSS (ENSMUSG00000049556.5) protein_coding-promoter-TSS (ENSMUSG00000049556.5) 4876 ENSMUSG00000111037.1 ENSMUSG00000111037 ENSMUST00000215507 Gm47235 lincRNA Interval_99861 chr2 165363372 165364792 + 0 NA intron (ENSMUSG00000056824.15, intron 1 of 5) protein_coding-intron (ENSMUSG00000056824.15, intron 1 of 5) 4641 ENSMUSG00000056824.15 ENSMUSG00000056824 ENSMUST00000141140 Zfp663 protein_coding Interval_132646 chr5 146926373 146927310 + 0 NA Intergenic Intergenic -21816 ENSMUSG00000016503.18 ENSMUSG00000016503 ENSMUST00000133296 Gtf3a protein_coding Interval_76417 chr17 80049225 80049468 + 0 NA intron (ENSMUSG00000024095.15, intron 4 of 5) protein_coding-intron (ENSMUSG00000024095.15, intron 4 of 12) -4680 ENSMUSG00000117518.1 ENSMUSG00000117518 ENSMUST00000234039 Gpx4-ps1 processed_pseudogene Interval_52667 chr14 48443547 48444150 + 0 NA Intergenic Intergenic -28474 ENSMUSG00000036339.18 ENSMUSG00000036339 ENSMUST00000226344 Tmem260 protein_coding Interval_10335 chr1 169519619 169520465 + 0 NA intron (ENSMUSG00000026683.14, intron 1 of 5) protein_coding-intron (ENSMUSG00000026683.14, intron 6 of 14) 2340 ENSMUSG00000026683.14 ENSMUSG00000026683 ENSMUST00000194831 Nuf2 protein_coding Interval_80107 chr18 37674180 37675035 + 0 NA exon (ENSMUSG00000104346.1, exon 1 of 4) protein_coding-exon (ENSMUSG00000104346.1, exon 1 of 4) 300 ENSMUSG00000104346.1 ENSMUSG00000104346 ENSMUST00000073447 Pcdhga3 protein_coding Interval_164787 chr9 41884513 41884765 + 0 NA Intergenic Intergenic 5965 ENSMUSG00000111726.1 ENSMUSG00000111726 ENSMUST00000217258 Gm40513 lincRNA Interval_165150 chr9 44850535 44851352 + 0 NA intron (ENSMUSG00000002028.13, intron 2 of 3) protein_coding-intron (ENSMUSG00000002028.13, intron 2 of 35) 8232 ENSMUSG00000111017.1 ENSMUSG00000111017 ENSMUST00000213541 Gm48314 TEC Interval_47858 chr13 93884027 93884386 + 0 NA intron (ENSMUSG00000042082.7, intron 6 of 7) protein_coding-intron (ENSMUSG00000042082.7, intron 6 of 7) 39105 ENSMUSG00000093106.1 ENSMUSG00000093106 ENSMUST00000175365 Gm25534 miRNA Interval_60217 chr15 68239043 68239605 + 0 NA intron (ENSMUSG00000022335.17, intron 1 of 13) protein_coding-intron (ENSMUSG00000022335.17, intron 1 of 4) 19463 ENSMUSG00000022335.17 ENSMUSG00000022335 ENSMUST00000161139 Zfat protein_coding Interval_140422 chr6 117978573 117978987 + 0 NA Intergenic Intergenic -18427 ENSMUSG00000082791.3 ENSMUSG00000082791 ENSMUST00000118257 Gm4875 processed_pseudogene Interval_149635 chr7 100234185 100234889 + 0 NA intron (ENSMUSG00000030729.17, intron 1 of 4) protein_coding-intron (ENSMUSG00000030729.17, intron 1 of 14) 6861 ENSMUSG00000030729.17 ENSMUSG00000030729 ENSMUST00000054436 Pgm2l1 protein_coding Interval_73743 chr17 43135741 43136689 + 0 NA Intergenic Intergenic 22051 ENSMUSG00000117011.1 ENSMUSG00000117011 ENSMUST00000232795 E130008D07Rik lincRNA Interval_148432 chr7 81209115 81209383 + 0 NA intron (ENSMUSG00000109323.1, intron 5 of 6) lincRNA-intron (ENSMUSG00000109323.1, intron 5 of 6) 4239 ENSMUSG00000109323.1 ENSMUSG00000109323 ENSMUST00000207652 Gm44968 lincRNA Interval_92749 chr2 65043822 65044031 + 0 NA Intergenic Intergenic -68157 ENSMUSG00000026888.14 ENSMUSG00000026888 ENSMUST00000146807 Grb14 protein_coding Interval_164669 chr9 40461362 40461798 + 0 NA intron (ENSMUSG00000040111.17, intron 1 of 20) protein_coding-intron (ENSMUSG00000040111.17, intron 1 of 20) -26140 ENSMUSG00000111515.1 ENSMUSG00000111515 ENSMUST00000215697 Gm5055 processed_pseudogene Interval_113691 chr4 57673385 57674489 + 0 NA intron (ENSMUSG00000089945.13, intron 2 of 8) protein_coding-intron (ENSMUSG00000089945.13, intron 3 of 10) 36114 ENSMUSG00000089945.13 ENSMUSG00000089945 ENSMUST00000150412 Pakap protein_coding Interval_44146 chr13 41219888 41220939 + 0 NA promoter-TSS (ENSMUSG00000021364.16) protein_coding-promoter-TSS (ENSMUSG00000021364.16) -251 ENSMUSG00000021364.16 ENSMUSG00000021364 ENSMUST00000117096 Elovl2 protein_coding Interval_34727 chr12 8988181 8988786 + 0 NA intron (ENSMUSG00000066643.12, intron 9 of 22) protein_coding-intron (ENSMUSG00000066643.12, intron 9 of 27) 14424 ENSMUSG00000066643.12 ENSMUSG00000066643 ENSMUST00000159735 Wdr35 protein_coding Interval_95768 chr2 116009328 116009548 + 0 NA intron (ENSMUSG00000027210.20, intron 2 of 3) protein_coding-intron (ENSMUSG00000027210.20, intron 7 of 11) 58006 ENSMUSG00000086328.1 ENSMUSG00000086328 ENSMUST00000140185 2700033N17Rik lincRNA Interval_5066 chr1 84763735 84765340 + 0 NA intron (ENSMUSG00000026219.14, intron 10 of 19) protein_coding-intron (ENSMUSG00000026219.14, intron 10 of 40) -35661 ENSMUSG00000026219.14 ENSMUSG00000026219 ENSMUST00000187818 Trip12 protein_coding Interval_51747 chr14 31910582 31910872 + 0 NA intron (ENSMUSG00000046005.4, intron 1 of 1) lincRNA-intron (ENSMUSG00000046005.4, intron 1 of 1) 4199 ENSMUSG00000046005.4 ENSMUSG00000046005 ENSMUST00000143315 D830044D21Rik lincRNA Interval_132902 chr5 148646490 148647075 + 0 NA Intergenic Intergenic -33138 ENSMUSG00000107098.1 ENSMUSG00000107098 ENSMUST00000202418 Gm29815 processed_pseudogene Interval_72271 chr17 28899791 28900626 + 0 NA intron (ENSMUSG00000048905.5, intron 10 of 11) protein_coding-intron (ENSMUSG00000048905.5, intron 10 of 11) -5057 ENSMUSG00000085333.1 ENSMUSG00000085333 ENSMUST00000125317 1700030A11Rik antisense Interval_60019 chr15 64005719 64005938 + 0 NA intron (ENSMUSG00000022378.14, intron 1 of 11) protein_coding-intron (ENSMUSG00000022378.14, intron 1 of 11) -20120 ENSMUSG00000065936.1 ENSMUSG00000065936 ENSMUST00000084002 Gm25628 snRNA Interval_75612 chr17 69282866 69284853 + 0 NA intron (ENSMUSG00000024044.19, intron 13 of 19) protein_coding-intron (ENSMUSG00000024044.19, intron 15 of 21) -6651 ENSMUSG00000100572.1 ENSMUSG00000100572 ENSMUST00000187090 2410021H03Rik antisense Interval_129375 chr5 119609241 119609562 + 0 NA intron (ENSMUSG00000087516.7, intron 1 of 5) antisense-intron (ENSMUSG00000087516.7, intron 1 of 5) -11197 ENSMUSG00000106991.1 ENSMUSG00000106991 ENSMUST00000202546 Gm43399 TEC Interval_139318 chr6 98665579 98667157 + 0 NA intron (ENSMUSG00000107614.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000107614.1, intron 1 of 1) 31306 ENSMUSG00000107614.1 ENSMUSG00000107614 ENSMUST00000204359 Gm44196 lincRNA Interval_66901 chr16 38423630 38423988 + 0 NA intron (ENSMUSG00000002847.7, intron 1 of 10) protein_coding-intron (ENSMUSG00000002847.7, intron 1 of 10) -6015 ENSMUSG00000002847.7 ENSMUSG00000002847 ENSMUST00000232224 Pla1a protein_coding Interval_49486 chr13 112380702 112381717 + 0 NA exon (ENSMUSG00000049985.15, exon 10 of 11) protein_coding-exon (ENSMUSG00000049985.15, exon 10 of 11) -13364 ENSMUSG00000114536.1 ENSMUSG00000114536 ENSMUST00000224393 Gm48837 antisense Interval_84388 chr19 10543712 10544751 + 0 NA intron (ENSMUSG00000034820.4, intron 10 of 10) protein_coding-intron (ENSMUSG00000034820.4, intron 9 of 9) 11505 ENSMUSG00000024667.12 ENSMUSG00000024667 ENSMUST00000131205 Tmem216 protein_coding Interval_82349 chr18 71666883 71667300 + 0 NA intron (ENSMUSG00000060534.16, intron 7 of 28) protein_coding-intron (ENSMUSG00000060534.16, intron 7 of 28) 683950 ENSMUSG00000060534.16 ENSMUSG00000060534 ENSMUST00000126030 Dcc protein_coding Interval_80384 chr18 40746070 40746760 + 0 NA Intergenic Intergenic 20146 ENSMUSG00000095150.3 ENSMUSG00000095150 ENSMUST00000180504 Rps19-ps13 processed_pseudogene Interval_98655 chr2 153875529 153875869 + 0 NA intron (ENSMUSG00000027481.2, intron 1 of 1) protein_coding-intron (ENSMUSG00000027481.2, intron 1 of 15) 624 ENSMUSG00000027481.2 ENSMUSG00000027481 ENSMUST00000129776 Bpifb2 protein_coding Interval_76685 chr17 83476833 83478139 + 0 NA intron (ENSMUSG00000032624.16, intron 6 of 6) protein_coding-intron (ENSMUSG00000032624.16, intron 20 of 20) 21185 ENSMUSG00000032624.16 ENSMUSG00000032624 ENSMUST00000235121 Eml4 protein_coding Interval_65936 chr16 30374016 30374948 + 0 NA intron (ENSMUSG00000022533.14, intron 3 of 4) protein_coding-intron (ENSMUSG00000022533.14, intron 2 of 32) -40634 ENSMUSG00000022533.14 ENSMUSG00000022533 ENSMUST00000136065 Atp13a3 protein_coding Interval_140204 chr6 115524051 115524749 + 0 NA Intergenic Intergenic 12500 ENSMUSG00000107704.1 ENSMUSG00000107704 ENSMUST00000203752 Gm36355 lincRNA Interval_34142 chr11 120887496 120888230 + 0 NA intron (ENSMUSG00000048445.6, intron 10 of 18) protein_coding-intron (ENSMUSG00000048445.6, intron 10 of 18) -14192 ENSMUSG00000048445.6 ENSMUSG00000048445 ENSMUST00000143895 Ccdc57 protein_coding Interval_159927 chr8 105236331 105236642 + 0 NA intron (ENSMUSG00000031889.9, intron 3 of 13) protein_coding-intron (ENSMUSG00000031889.9, intron 3 of 15) 11280 ENSMUSG00000031889.9 ENSMUSG00000031889 ENSMUST00000133035 D230025D16Rik protein_coding Interval_3656 chr1 60447236 60447528 + 0 NA TTS (ENSMUSG00000026782.15) protein_coding-TTS (ENSMUSG00000026782.15) 37601 ENSMUSG00000026782.15 ENSMUSG00000026782 ENSMUST00000190158 Abi2 protein_coding Interval_65952 chr16 30499088 30499985 + 0 NA Intergenic Intergenic 43961 ENSMUSG00000022537.18 ENSMUSG00000022537 ENSMUST00000153380 Tmem44 protein_coding Interval_12565 chr10 3218186 3218436 + 0 NA intron (ENSMUSG00000110787.1, intron 1 of 2) unprocessed_pseudogene-intron (ENSMUSG00000110787.1, intron 1 of 2) 16722 ENSMUSG00000110787.1 ENSMUSG00000110787 ENSMUST00000217169 Gm6667 unprocessed_pseudogene Interval_128784 chr5 115237656 115238503 + 0 NA promoter-TSS (ENSMUSG00000060152.14) protein_coding-promoter-TSS (ENSMUSG00000060152.14) 100 ENSMUSG00000060152.14 ENSMUSG00000060152 ENSMUST00000140083 Pop5 protein_coding Interval_28205 chr11 74364844 74365035 + 0 NA exon (ENSMUSG00000058275.3, exon 1 of 1) protein_coding-exon (ENSMUSG00000058275.3, exon 1 of 1) 2870 ENSMUSG00000058275.3 ENSMUSG00000058275 ENSMUST00000077794 Olfr412 protein_coding Interval_75187 chr17 64492148 64492333 + 0 NA Intergenic Intergenic 51434 ENSMUSG00000098984.1 ENSMUSG00000098984 ENSMUST00000185032 Mir6420 miRNA Interval_62623 chr15 95725547 95727055 + 0 NA Intergenic Intergenic 11108 ENSMUSG00000116058.1 ENSMUSG00000116058 ENSMUST00000230585 Gm8843 processed_pseudogene Interval_123858 chr5 36005729 36006113 + 0 NA Intergenic Intergenic 21733 ENSMUSG00000029094.12 ENSMUSG00000029094 ENSMUST00000201482 Afap1 protein_coding Interval_107432 chr3 107614605 107614927 + 0 NA promoter-TSS (ENSMUSG00000014601.13) protein_coding-promoter-TSS (ENSMUSG00000014601.13) -685 ENSMUSG00000014601.13 ENSMUSG00000014601 ENSMUST00000198424 Strip1 protein_coding Interval_148152 chr7 79504581 79506247 + 0 NA TTS (ENSMUSG00000093238.1) miRNA-TTS (ENSMUSG00000093238.1) 150 ENSMUSG00000093238.1 ENSMUSG00000093238 ENSMUST00000175497 Mir9-3 miRNA Interval_31739 chr11 102563000 102563404 + 0 NA Intergenic Intergenic -7003 ENSMUSG00000034621.14 ENSMUSG00000034621 ENSMUST00000125754 Gpatch8 protein_coding Interval_120278 chr4 145129741 145129964 + 0 NA intron (ENSMUSG00000020220.16, intron 9 of 51) protein_coding-intron (ENSMUSG00000020220.16, intron 26 of 67) 25634 ENSMUSG00000020220.16 ENSMUSG00000020220 ENSMUST00000132700 Vps13d protein_coding Interval_174447 chrX 152523155 152524466 + 0 NA Intergenic Intergenic -13691 ENSMUSG00000091863.2 ENSMUSG00000091863 ENSMUST00000164764 Cldn34a protein_coding Interval_117329 chr4 123014027 123015103 + 0 NA Intergenic Intergenic -2032 ENSMUSG00000028653.16 ENSMUSG00000028653 ENSMUST00000141855 Trit1 protein_coding Interval_6132 chr1 97784939 97785773 + 0 NA TTS (ENSMUSG00000026333.14) protein_coding-TTS (ENSMUSG00000026333.14) 7957 ENSMUSG00000026333.14 ENSMUSG00000026333 ENSMUST00000189031 Gin1 protein_coding Interval_55709 chr14 99206333 99207115 + 0 NA intron (ENSMUSG00000022064.10, intron 5 of 8) protein_coding-intron (ENSMUSG00000022064.10, intron 14 of 17) 84912 ENSMUSG00000100172.1 ENSMUSG00000100172 ENSMUST00000186660 Gm4412 processed_pseudogene Interval_152865 chr7 138901115 138901356 + 0 NA TTS (ENSMUSG00000110237.1) processed_pseudogene-TTS (ENSMUSG00000110237.1) 1847 ENSMUSG00000110237.1 ENSMUSG00000110237 ENSMUST00000210413 Gm18258 processed_pseudogene Interval_166559 chr9 60895622 60896043 + 0 NA Intergenic Intergenic -23391 ENSMUSG00000111444.1 ENSMUSG00000111444 ENSMUST00000216374 Gm47923 lincRNA Interval_100332 chr2 168445394 168445893 + 0 NA Intergenic Intergenic -27069 ENSMUSG00000082239.1 ENSMUSG00000082239 ENSMUST00000119539 Gm14234 processed_pseudogene Interval_117671 chr4 125481516 125481712 + 0 NA Intergenic Intergenic -9086 ENSMUSG00000001985.9 ENSMUSG00000001985 ENSMUST00000030676 Grik3 protein_coding Interval_19140 chr10 95039308 95040275 + 0 NA Intergenic Intergenic -40349 ENSMUSG00000112277.1 ENSMUSG00000112277 ENSMUST00000218192 Gm48867 lincRNA Interval_144054 chr7 19211199 19211594 + 0 NA Intergenic Intergenic -1142 ENSMUSG00000044317.7 ENSMUSG00000044317 ENSMUST00000060225 Gpr4 protein_coding Interval_165996 chr9 55276128 55276320 + 0 NA intron (ENSMUSG00000032311.17, intron 2 of 3) protein_coding-intron (ENSMUSG00000032311.17, intron 3 of 3) 7401 ENSMUSG00000032311.17 ENSMUSG00000032311 ENSMUST00000133659 Nrg4 protein_coding Interval_117757 chr4 126056975 126059024 + 0 NA promoter-TSS (ENSMUSG00000042616.8) protein_coding-promoter-TSS (ENSMUSG00000042616.8) 11022 ENSMUSG00000028861.13 ENSMUSG00000028861 ENSMUST00000124614 Mrps15 protein_coding Interval_78138 chr18 9211789 9215270 + 0 NA exon (ENSMUSG00000036904.6, exon 1 of 1) protein_coding-exon (ENSMUSG00000036904.6, exon 1 of 1) 1366 ENSMUSG00000036904.6 ENSMUSG00000036904 ENSMUST00000041080 Fzd8 protein_coding Interval_10028 chr1 165193780 165194932 + 0 NA promoter-TSS (ENSMUSG00000040848.11) protein_coding-promoter-TSS (ENSMUSG00000040848.11) -39 ENSMUSG00000040848.11 ENSMUSG00000040848 ENSMUST00000192565 Sft2d2 protein_coding Interval_145955 chr7 42630125 42632371 + 0 NA intron (ENSMUSG00000074158.9, intron 1 of 3) protein_coding-intron (ENSMUSG00000074158.9, intron 1 of 3) -14889 ENSMUSG00000074158.9 ENSMUSG00000074158 ENSMUST00000098503 Zfp976 protein_coding Interval_8827 chr1 151413208 151414291 + 0 NA promoter-TSS (ENSMUSG00000052748.14) protein_coding-promoter-TSS (ENSMUSG00000052748.14) -9142 ENSMUSG00000052748.14 ENSMUSG00000052748 ENSMUST00000185247 Swt1 protein_coding Interval_99647 chr2 163913875 163914451 + 0 NA intron (ENSMUSG00000035226.5, intron 1 of 5) protein_coding-intron (ENSMUSG00000035226.5, intron 1 of 5) 4520 ENSMUSG00000035226.5 ENSMUSG00000035226 ENSMUST00000044734 Rims4 protein_coding Interval_154426 chr8 16216138 16216780 + 0 NA intron (ENSMUSG00000060924.15, intron 17 of 33) protein_coding-intron (ENSMUSG00000060924.15, intron 17 of 69) -9544 ENSMUSG00000085150.1 ENSMUSG00000085150 ENSMUST00000129158 Gm16346 antisense Interval_80058 chr18 37010612 37013144 + 0 NA promoter-TSS (ENSMUSG00000102206.5) protein_coding-promoter-TSS (ENSMUSG00000102206.5) 1164 ENSMUSG00000102206.5 ENSMUSG00000102206 ENSMUST00000193856 Pcdha11 protein_coding Interval_171720 chr9 120491904 120493301 + 0 NA promoter-TSS (ENSMUSG00000111828.1) antisense-promoter-TSS (ENSMUSG00000111828.1) -55 ENSMUSG00000111828.1 ENSMUSG00000111828 ENSMUST00000213677 D830035M03Rik antisense Interval_84807 chr19 16899855 16900177 + 0 NA intron (ENSMUSG00000118126.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000118126.1, intron 1 of 1) -19317 ENSMUSG00000118126.1 ENSMUSG00000118126 ENSMUST00000236072 Gm32341 lincRNA Interval_37123 chr12 58638459 58638646 + 0 NA Intergenic Intergenic -125354 ENSMUSG00000112487.1 ENSMUSG00000112487 ENSMUST00000219517 Gm18873 processed_pseudogene Interval_165055 chr9 44178299 44179704 + 0 NA TTS (ENSMUSG00000110972.1) TEC-TTS (ENSMUSG00000110972.1) -1674 ENSMUSG00000110966.1 ENSMUSG00000110966 ENSMUST00000214044 Gm47255 processed_pseudogene Interval_50874 chr14 20378062 20379472 + 0 NA TTS (ENSMUSG00000039599.16) protein_coding-TTS (ENSMUSG00000039599.16) 109 ENSMUSG00000114937.1 ENSMUSG00000114937 ENSMUST00000225363 Gm30054 antisense Interval_133076 chr5 149678086 149679324 + 0 NA intron (ENSMUSG00000051950.10, intron 1 of 14) protein_coding-intron (ENSMUSG00000051950.10, intron 1 of 14) -17482 ENSMUSG00000080002.2 ENSMUSG00000080002 ENSMUST00000116118 Gm5566 processed_pseudogene Interval_24122 chr11 30566254 30566505 + 0 NA intron (ENSMUSG00000060923.5, intron 3 of 3) protein_coding-intron (ENSMUSG00000060923.5, intron 3 of 3) 2519 ENSMUSG00000082078.1 ENSMUSG00000082078 ENSMUST00000118277 Gm12098 processed_pseudogene Interval_89367 chr2 19933287 19935043 + 0 NA promoter-TSS (ENSMUSG00000065644.1) snoRNA-promoter-TSS (ENSMUSG00000065644.1) -698 ENSMUSG00000065644.1 ENSMUSG00000065644 ENSMUST00000083710 Gm25859 snoRNA Interval_119457 chr4 137727596 137729398 + 0 NA TTS (ENSMUSG00000041351.16) protein_coding-TTS (ENSMUSG00000041351.16) -21891 ENSMUSG00000087476.1 ENSMUSG00000087476 ENSMUST00000135358 Rap1gapos antisense Interval_152637 chr7 135621656 135622179 + 0 NA intron (ENSMUSG00000041836.10, intron 1 of 19) protein_coding-intron (ENSMUSG00000041836.10, intron 2 of 20) 28529 ENSMUSG00000041836.10 ENSMUSG00000041836 ENSMUST00000211092 Ptpre protein_coding Interval_48050 chr13 95568783 95569823 + 0 NA Intergenic Intergenic 9673 ENSMUSG00000113969.1 ENSMUSG00000113969 ENSMUST00000221593 Gm48731 processed_pseudogene Interval_76238 chr17 78354784 78354987 + 0 NA intron (ENSMUSG00000024074.8, intron 10 of 14) protein_coding-intron (ENSMUSG00000024074.8, intron 12 of 16) 47650 ENSMUSG00000056121.16 ENSMUSG00000056121 ENSMUST00000234900 Fez2 protein_coding Interval_28629 chr11 77440726 77441535 + 0 NA intron (ENSMUSG00000037926.15, intron 11 of 13) protein_coding-intron (ENSMUSG00000037926.15, intron 12 of 14) -21515 ENSMUSG00000020836.15 ENSMUSG00000020836 ENSMUST00000079770 Coro6 protein_coding Interval_28259 chr11 74739265 74739462 + 0 NA Intergenic Intergenic -6993 ENSMUSG00000081252.1 ENSMUSG00000081252 ENSMUST00000118534 Gm16032 processed_pseudogene Interval_86193 chr19 37690717 37691264 + 0 NA exon (ENSMUSG00000062432.4, exon 5 of 6) protein_coding-exon (ENSMUSG00000062432.4, exon 5 of 6) 5409 ENSMUSG00000062432.4 ENSMUSG00000062432 ENSMUST00000073391 Cyp26c1 protein_coding Interval_167807 chr9 72806558 72808413 + 0 NA exon (ENSMUSG00000036030.9, exon 1 of 20) protein_coding-exon (ENSMUSG00000036030.9, exon 1 of 20) 20078 ENSMUSG00000098471.1 ENSMUSG00000098471 ENSMUST00000183677 Gm27203 processed_pseudogene Interval_83585 chr18 90218969 90219598 + 0 NA Intergenic Intergenic -9616 ENSMUSG00000089008.1 ENSMUSG00000089008 ENSMUST00000158383 Gm23859 snRNA Interval_135682 chr6 43307389 43307620 + 0 NA promoter-TSS (ENSMUSG00000029736.15) protein_coding-promoter-TSS (ENSMUSG00000029736.15) -2369 ENSMUSG00000029736.15 ENSMUSG00000029736 ENSMUST00000172554 Nobox protein_coding Interval_123021 chr5 28494105 28494331 + 0 NA intron (ENSMUSG00000097726.7, intron 1 of 6) antisense-intron (ENSMUSG00000097726.7, intron 1 of 6) -26962 ENSMUSG00000002633.4 ENSMUSG00000002633 ENSMUST00000002708 Shh protein_coding Interval_92518 chr2 60250970 60251591 + 0 NA TTS (ENSMUSG00000060703.12) protein_coding-TTS (ENSMUSG00000060703.12) 24294 ENSMUSG00000080198.2 ENSMUSG00000080198 ENSMUST00000116410 Rpl10a-ps4 processed_pseudogene Interval_105811 chr3 89456792 89457629 + 0 NA intron (ENSMUSG00000027952.16, intron 1 of 3) protein_coding-intron (ENSMUSG00000027952.16, intron 1 of 3) 2669 ENSMUSG00000027952.16 ENSMUSG00000027952 ENSMUST00000184515 Pmvk protein_coding Interval_146944 chr7 56106290 56106693 + 0 NA exon (ENSMUSG00000030451.16, exon 16 of 93) protein_coding-exon (ENSMUSG00000030451.16, exon 16 of 93) 38507 ENSMUSG00000030451.16 ENSMUSG00000030451 ENSMUST00000205678 Herc2 protein_coding Interval_29465 chr11 84156499 84156951 + 0 NA intron (ENSMUSG00000051452.8, intron 3 of 6) protein_coding-intron (ENSMUSG00000051452.8, intron 3 of 6) 10751 ENSMUSG00000051452.8 ENSMUSG00000051452 ENSMUST00000050771 Gm11437 protein_coding Interval_7846 chr1 134100852 134101164 + 0 NA Intergenic Intergenic -1849 ENSMUSG00000102380.1 ENSMUSG00000102380 ENSMUST00000193617 Gm38140 TEC Interval_139190 chr6 97048094 97048756 + 0 NA intron (ENSMUSG00000046500.8, intron 1 of 5) protein_coding-intron (ENSMUSG00000046500.8, intron 1 of 5) 11968 ENSMUSG00000046500.8 ENSMUSG00000046500 ENSMUST00000203930 Tafa4 protein_coding Interval_165803 chr9 53273171 53273488 + 0 NA intron (ENSMUSG00000032048.3, intron 1 of 1) lincRNA-intron (ENSMUSG00000032048.3, intron 1 of 1) 8714 ENSMUSG00000032048.3 ENSMUSG00000032048 ENSMUST00000034550 4930510E17Rik lincRNA Interval_159193 chr8 91543119 91543454 + 0 NA intron (ENSMUSG00000055932.15, intron 5 of 5) protein_coding-intron (ENSMUSG00000055932.15, intron 8 of 8) -10562 ENSMUSG00000109709.1 ENSMUSG00000109709 ENSMUST00000211177 Gm45290 TEC Interval_82313 chr18 70573515 70574014 + 0 NA intron (ENSMUSG00000024513.16, intron 1 of 2) protein_coding-intron (ENSMUSG00000024513.16, intron 1 of 6) -19491 ENSMUSG00000024513.16 ENSMUSG00000024513 ENSMUST00000128555 Mbd2 protein_coding Interval_80828 chr18 47743367 47746068 + 0 NA exon (ENSMUSG00000118139.1, exon 3 of 3) lincRNA-exon (ENSMUSG00000118139.1, exon 3 of 3) 11609 ENSMUSG00000118139.1 ENSMUSG00000118139 ENSMUST00000237736 Gm41720 lincRNA Interval_83721 chr19 3946393 3947001 + 0 NA intron (ENSMUSG00000036908.17, intron 9 of 10) protein_coding-intron (ENSMUSG00000036908.17, intron 3 of 4) 10618 ENSMUSG00000036908.17 ENSMUSG00000036908 ENSMUST00000161415 Unc93b1 protein_coding Interval_77958 chr18 6135331 6136871 + 0 NA promoter-TSS (ENSMUSG00000041225.16) protein_coding-promoter-TSS (ENSMUSG00000041225.16) -24121 ENSMUSG00000041225.16 ENSMUSG00000041225 ENSMUST00000182572 Arhgap12 protein_coding Interval_159424 chr8 94532002 94533950 + 0 NA promoter-TSS (ENSMUSG00000034361.10) protein_coding-promoter-TSS (ENSMUSG00000034361.10) -22538 ENSMUSG00000034361.10 ENSMUSG00000034361 ENSMUST00000156377 Cpne2 protein_coding Interval_20259 chr10 116488164 116489189 + 0 NA intron (ENSMUSG00000020166.15, intron 15 of 15) protein_coding-intron (ENSMUSG00000020166.15, intron 13 of 13) 10802 ENSMUSG00000020166.15 ENSMUSG00000020166 ENSMUST00000218744 Cnot2 protein_coding Interval_90284 chr2 29533624 29534027 + 0 NA Intergenic Intergenic 35613 ENSMUSG00000082413.1 ENSMUSG00000082413 ENSMUST00000117074 Gm13401 processed_pseudogene Interval_115596 chr4 101244604 101244882 + 0 NA intron (ENSMUSG00000028530.14, intron 1 of 2) protein_coding-intron (ENSMUSG00000028530.14, intron 1 of 24) 20538 ENSMUSG00000028530.14 ENSMUSG00000028530 ENSMUST00000125968 Jak1 protein_coding Interval_21439 chr10 128615118 128615401 + 0 NA promoter-TSS (ENSMUSG00000112068.1) processed_pseudogene-promoter-TSS (ENSMUSG00000112068.1) -142 ENSMUSG00000112068.1 ENSMUSG00000112068 ENSMUST00000217829 Gm9182 processed_pseudogene Interval_32624 chr11 109237172 109238201 + 0 NA intron (ENSMUSG00000020599.13, intron 16 of 16) protein_coding-intron (ENSMUSG00000020599.13, intron 16 of 18) 9279 ENSMUSG00000020599.13 ENSMUSG00000020599 ENSMUST00000106704 Rgs9 protein_coding Interval_156111 chr8 44891406 44891822 + 0 NA Intergenic Intergenic 43545 ENSMUSG00000110409.1 ENSMUSG00000110409 ENSMUST00000211534 Gm9908 bidirectional_promoter_lncRNA Interval_121057 chr4 152495264 152495763 + 0 NA intron (ENSMUSG00000039577.17, intron 2 of 3) protein_coding-intron (ENSMUSG00000039577.17, intron 2 of 28) 17335 ENSMUSG00000039577.17 ENSMUSG00000039577 ENSMUST00000123635 Nphp4 protein_coding Interval_151130 chr7 118732709 118733375 + 0 NA TTS (ENSMUSG00000033904.16) protein_coding-TTS (ENSMUSG00000033904.16) 6487 ENSMUSG00000033904.16 ENSMUSG00000033904 ENSMUST00000140831 Ccp110 protein_coding Interval_113276 chr4 53011621 53012853 + 0 NA intron (ENSMUSG00000015247.10, intron 1 of 4) protein_coding-intron (ENSMUSG00000015247.10, intron 1 of 5) -8739 ENSMUSG00000015247.10 ENSMUSG00000015247 ENSMUST00000132678 Nipsnap3b protein_coding Interval_57974 chr15 25811550 25812700 + 0 NA exon (ENSMUSG00000022272.17, exon 21 of 21) protein_coding-exon (ENSMUSG00000022272.17, exon 21 of 21) 28486 ENSMUSG00000115593.1 ENSMUSG00000115593 ENSMUST00000228649 Gm4824 processed_pseudogene Interval_39321 chr12 86700778 86701122 + 0 NA exon (ENSMUSG00000021257.14, exon 10 of 10) protein_coding-exon (ENSMUSG00000021257.14, exon 10 of 10) -14036 ENSMUSG00000091942.1 ENSMUSG00000091942 ENSMUST00000165702 Gm17138 processed_pseudogene Interval_89535 chr2 21979691 21980115 + 0 NA Intergenic Intergenic -87923 ENSMUSG00000081467.1 ENSMUSG00000081467 ENSMUST00000119183 Gm13337 processed_pseudogene Interval_86624 chr19 42128516 42130268 + 0 NA promoter-TSS (ENSMUSG00000018821.3) protein_coding-promoter-TSS (ENSMUSG00000018821.3) -403 ENSMUSG00000018821.3 ENSMUSG00000018821 ENSMUST00000161873 Avpi1 protein_coding Interval_97745 chr2 143709042 143709518 + 0 NA intron (ENSMUSG00000027419.9, intron 5 of 11) protein_coding-intron (ENSMUSG00000027419.9, intron 5 of 11) 86685 ENSMUSG00000087115.7 ENSMUSG00000087115 ENSMUST00000156362 Pcsk2os2 antisense Interval_139269 chr6 97733685 97733978 + 0 NA Intergenic Intergenic 3392 ENSMUSG00000094510.1 ENSMUSG00000094510 ENSMUST00000180099 Gm24565 snRNA Interval_45773 chr13 57984038 57984522 + 0 NA Intergenic Intergenic 38920 ENSMUSG00000077962.1 ENSMUSG00000077962 ENSMUST00000104769 Mir874 miRNA Interval_59000 chr15 41596990 41597202 + 0 NA intron (ENSMUSG00000022307.16, intron 2 of 15) protein_coding-intron (ENSMUSG00000022307.16, intron 2 of 15) 191815 ENSMUSG00000097232.1 ENSMUSG00000097232 ENSMUST00000180418 Gm26854 antisense Interval_136358 chr6 53721585 53722564 + 0 NA Intergenic Intergenic 54304 ENSMUSG00000108004.1 ENSMUSG00000108004 ENSMUST00000204451 Gm44080 TEC Interval_136519 chr6 55117255 55118255 + 0 NA promoter-TSS (ENSMUSG00000003476.16) protein_coding-promoter-TSS (ENSMUSG00000003476.16) 158 ENSMUSG00000003476.16 ENSMUSG00000003476 ENSMUST00000169777 Crhr2 protein_coding Interval_153684 chr8 4588292 4588959 + 0 NA Intergenic Intergenic -24542 ENSMUSG00000058748.9 ENSMUSG00000058748 ENSMUST00000073201 Zfp958 protein_coding Interval_25711 chr11 50963277 50963532 + 0 NA Intergenic Intergenic -3126 ENSMUSG00000050343.2 ENSMUSG00000050343 ENSMUST00000052285 Olfr1378 protein_coding Interval_76759 chr17 83871190 83871691 + 0 NA Intergenic Intergenic -17022 ENSMUSG00000097254.2 ENSMUSG00000097254 ENSMUST00000234697 C430042M11Rik lincRNA Interval_5712 chr1 91135230 91137339 + 0 NA Intergenic Intergenic -8805 ENSMUSG00000070732.2 ENSMUSG00000070732 ENSMUST00000185229 Rbm44 protein_coding Interval_109848 chr3 148922507 148923220 + 0 NA intron (ENSMUSG00000028184.12, intron 2 of 19) protein_coding-intron (ENSMUSG00000028184.12, intron 2 of 2) -66289 ENSMUSG00000104786.1 ENSMUSG00000104786 ENSMUST00000196445 Gm43573 antisense Interval_63625 chr15 102421404 102422014 + 0 NA intron (ENSMUSG00000001280.13, intron 3 of 5) protein_coding-intron (ENSMUSG00000001280.13, intron 3 of 5) 15566 ENSMUSG00000001280.13 ENSMUSG00000001280 ENSMUST00000168802 Sp1 protein_coding Interval_53633 chr14 60398781 60399330 + 0 NA Intergenic Intergenic 20769 ENSMUSG00000021986.9 ENSMUSG00000021986 ENSMUST00000239079 Amer2 protein_coding Interval_132060 chr5 142544726 142547268 + 0 NA promoter-TSS (ENSMUSG00000029576.17) protein_coding-promoter-TSS (ENSMUSG00000029576.17) -10447 ENSMUSG00000105213.1 ENSMUSG00000105213 ENSMUST00000196808 Gm43037 unprocessed_pseudogene Interval_90065 chr2 27684097 27684557 + 0 NA intron (ENSMUSG00000015846.15, intron 2 of 10) protein_coding-intron (ENSMUSG00000015846.15, intron 1 of 9) -40892 ENSMUSG00000015846.15 ENSMUSG00000015846 ENSMUST00000148756 Rxra protein_coding Interval_85731 chr19 30157162 30157581 + 0 NA intron (ENSMUSG00000024827.10, intron 3 of 18) protein_coding-intron (ENSMUSG00000024827.10, intron 3 of 24) -3249 ENSMUSG00000058607.4 ENSMUSG00000058607 ENSMUST00000080982 Rpl31-ps20 processed_pseudogene Interval_30699 chr11 95971948 95974137 + 0 NA TTS (ENSMUSG00000013415.9) protein_coding-TTS (ENSMUSG00000013415.9) 9552 ENSMUSG00000013415.9 ENSMUSG00000013415 ENSMUST00000141515 Igf2bp1 protein_coding Interval_96773 chr2 128078971 128079335 + 0 NA intron (ENSMUSG00000027380.10, intron 8 of 10) protein_coding-intron (ENSMUSG00000027380.10, intron 15 of 17) -10771 ENSMUSG00000088175.1 ENSMUSG00000088175 ENSMUST00000157550 Gm23101 snRNA Interval_17838 chr10 80329246 80330384 + 0 NA promoter-TSS (ENSMUSG00000020131.14) protein_coding-promoter-TSS (ENSMUSG00000020131.14) -330 ENSMUSG00000035504.16 ENSMUSG00000035504 ENSMUST00000040081 Reep6 protein_coding Interval_51462 chr14 27734218 27734416 + 0 NA intron (ENSMUSG00000040640.11, intron 1 of 7) protein_coding-intron (ENSMUSG00000040640.11, intron 2 of 15) 19940 ENSMUSG00000114653.1 ENSMUSG00000114653 ENSMUST00000224481 Gm18398 processed_pseudogene Interval_85754 chr19 30428885 30429374 + 0 NA Intergenic Intergenic 62156 ENSMUSG00000118374.1 ENSMUSG00000118374 ENSMUST00000236809 Gm17885 processed_pseudogene Interval_112982 chr4 46617514 46618465 + 0 NA intron (ENSMUSG00000039813.14, intron 6 of 12) protein_coding-intron (ENSMUSG00000039813.14, intron 6 of 12) -16098 ENSMUSG00000028337.14 ENSMUSG00000028337 ENSMUST00000127304 Coro2a protein_coding Interval_80258 chr18 38583691 38584781 + 0 NA TTS (ENSMUSG00000118296.1) processed_pseudogene-TTS (ENSMUSG00000118296.1) 1386 ENSMUSG00000118296.1 ENSMUSG00000118296 ENSMUST00000236625 Gm19100 processed_pseudogene Interval_114905 chr4 86841162 86841869 + 0 NA intron (ENSMUSG00000038024.17, intron 28 of 30) protein_coding-intron (ENSMUSG00000038024.17, intron 30 of 32) 15830 ENSMUSG00000028495.14 ENSMUSG00000028495 ENSMUST00000130001 Rps6 protein_coding Interval_86952 chr19 45160465 45161372 + 0 NA Intergenic Intergenic -1614 ENSMUSG00000092346.1 ENSMUSG00000092346 ENSMUST00000173437 Tlx1os antisense Interval_68117 chr16 65321789 65322030 + 0 NA Intergenic Intergenic -17209 ENSMUSG00000116687.1 ENSMUSG00000116687 ENSMUST00000232590 Gm49629 processed_pseudogene Interval_32273 chr11 106638474 106638814 + 0 NA Intergenic Intergenic 24682 ENSMUSG00000020717.19 ENSMUSG00000020717 ENSMUST00000124958 Pecam1 protein_coding Interval_79203 chr18 25621282 25622532 + 0 NA intron (ENSMUSG00000024268.16, intron 2 of 5) protein_coding-intron (ENSMUSG00000024268.16, intron 2 of 12) -23453 ENSMUSG00000084537.1 ENSMUSG00000084537 ENSMUST00000122588 Gm25845 misc_RNA Interval_125802 chr5 74277378 74278221 + 0 NA intron (ENSMUSG00000062110.14, intron 5 of 7) protein_coding-intron (ENSMUSG00000062110.14, intron 5 of 8) 10811 ENSMUSG00000062110.14 ENSMUSG00000062110 ENSMUST00000123203 Scfd2 protein_coding Interval_101433 chr2 181357080 181359093 + 0 NA TTS (ENSMUSG00000118593.1) unitary_pseudogene-TTS (ENSMUSG00000118593.1) 1164 ENSMUSG00000118593.1 ENSMUSG00000118593 ENSMUST00000239235 AL928965.1 unitary_pseudogene Interval_55719 chr14 99291793 99293046 + 0 NA promoter-TSS (ENSMUSG00000100172.1) processed_pseudogene-promoter-TSS (ENSMUSG00000100172.1) -783 ENSMUSG00000100172.1 ENSMUSG00000100172 ENSMUST00000186660 Gm4412 processed_pseudogene Interval_125142 chr5 64830811 64831317 + 0 NA exon (ENSMUSG00000029178.14, exon 6 of 6) protein_coding-exon (ENSMUSG00000029178.14, exon 6 of 6) 27050 ENSMUSG00000106205.1 ENSMUSG00000106205 ENSMUST00000198074 C230096K16Rik TEC Interval_167248 chr9 66658627 66659579 + 0 NA Intergenic Intergenic -54626 ENSMUSG00000032373.15 ENSMUSG00000032373 ENSMUST00000134829 Car12 protein_coding Interval_158399 chr8 83441862 83443013 + 0 NA promoter-TSS (ENSMUSG00000063253.11) protein_coding-promoter-TSS (ENSMUSG00000063253.11) -4610 ENSMUSG00000063253.11 ENSMUSG00000063253 ENSMUST00000212849 Scoc protein_coding Interval_138498 chr6 88748553 88748980 + 0 NA intron (ENSMUSG00000033174.17, intron 2 of 6) protein_coding-intron (ENSMUSG00000033174.17, intron 2 of 7) 6039 ENSMUSG00000107835.1 ENSMUSG00000107835 ENSMUST00000204286 Gm43999 TEC Interval_3605 chr1 59941252 59942596 + 0 NA intron (ENSMUSG00000041040.12, intron 1 of 7) protein_coding-intron (ENSMUSG00000041040.12, intron 1 of 7) 10540 ENSMUSG00000100901.1 ENSMUSG00000100901 ENSMUST00000188150 Gm18829 processed_pseudogene Interval_29066 chr11 80135970 80138191 + 0 NA TTS (ENSMUSG00000046909.9) protein_coding-TTS (ENSMUSG00000046909.9) 2829 ENSMUSG00000046909.9 ENSMUSG00000046909 ENSMUST00000131601 Tefm protein_coding Interval_148337 chr7 80586864 80587962 + 0 NA exon (ENSMUSG00000030527.15, exon 15 of 15) protein_coding-exon (ENSMUSG00000030527.15, exon 15 of 15) 16370 ENSMUSG00000108643.1 ENSMUSG00000108643 ENSMUST00000206056 Gm44931 TEC Interval_99561 chr2 163211524 163211892 + 0 NA intron (ENSMUSG00000074607.11, intron 1 of 2) protein_coding-intron (ENSMUSG00000074607.11, intron 1 of 8) -13746 ENSMUSG00000074607.11 ENSMUSG00000074607 ENSMUST00000148599 Tox2 protein_coding Interval_92989 chr2 69221535 69222484 + 0 NA intron (ENSMUSG00000005232.11, intron 2 of 4) protein_coding-intron (ENSMUSG00000005232.11, intron 2 of 4) 1981 ENSMUSG00000005232.11 ENSMUSG00000005232 ENSMUST00000151953 G6pc2 protein_coding Interval_113681 chr4 57543225 57544283 + 0 NA intron (ENSMUSG00000090053.9, intron 1 of 6) protein_coding-intron (ENSMUSG00000090053.9, intron 1 of 6) -24566 ENSMUSG00000090053.9 ENSMUSG00000090053 ENSMUST00000131201 Pakap protein_coding Interval_56745 chr14 121834415 121834584 + 0 NA Intergenic Intergenic 3485 ENSMUSG00000115443.1 ENSMUSG00000115443 ENSMUST00000228932 Gm9395 processed_pseudogene Interval_89280 chr2 18779096 18779285 + 0 NA Intergenic Intergenic -18328 ENSMUSG00000092353.1 ENSMUSG00000092353 ENSMUST00000174811 Gm20539 lincRNA Interval_98979 chr2 156447191 156448460 + 0 NA promoter-TSS (ENSMUSG00000086872.1) antisense-promoter-TSS (ENSMUSG00000086872.1) -217 ENSMUSG00000086872.1 ENSMUSG00000086872 ENSMUST00000142310 Gm14225 antisense Interval_571 chr1 7585668 7586853 + 0 NA Intergenic Intergenic -5386 ENSMUSG00000102320.1 ENSMUSG00000102320 ENSMUST00000195081 Gm37791 processed_pseudogene Interval_86502 chr19 41191749 41192225 + 0 NA intron (ENSMUSG00000025013.15, intron 1 of 20) protein_coding-intron (ENSMUSG00000025013.15, intron 1 of 20) 14787 ENSMUSG00000025013.15 ENSMUSG00000025013 ENSMUST00000169941 Tll2 protein_coding Interval_66439 chr16 33865479 33865694 + 0 NA exon (ENSMUSG00000022817.15, exon 3 of 15) protein_coding-exon (ENSMUSG00000022817.15, exon 3 of 15) -26355 ENSMUSG00000022817.15 ENSMUSG00000022817 ENSMUST00000231409 Itgb5 protein_coding Interval_90636 chr2 31597944 31599012 + 0 NA TTS (ENSMUSG00000026843.15) protein_coding-TTS (ENSMUSG00000026843.15) -13943 ENSMUSG00000098904.1 ENSMUSG00000098904 ENSMUST00000183343 Mir6998 miRNA Interval_95855 chr2 117303754 117304108 + 0 NA intron (ENSMUSG00000027347.18, intron 3 of 14) protein_coding-intron (ENSMUSG00000027347.18, intron 3 of 16) 38946 ENSMUSG00000027347.18 ENSMUSG00000027347 ENSMUST00000110898 Rasgrp1 protein_coding Interval_30135 chr11 89583827 89584039 + 0 NA intron (ENSMUSG00000047773.15, intron 4 of 21) protein_coding-intron (ENSMUSG00000047773.15, intron 2 of 16) 257333 ENSMUSG00000047773.15 ENSMUSG00000047773 ENSMUST00000207171 Ankfn1 protein_coding Interval_22536 chr11 11586105 11586682 + 0 NA Intergenic Intergenic 28972 ENSMUSG00000087452.1 ENSMUSG00000087452 ENSMUST00000146304 Gm11998 antisense Interval_64634 chr16 13779814 13781415 + 0 NA promoter-TSS (ENSMUSG00000022682.8) protein_coding-promoter-TSS (ENSMUSG00000022682.8) -94 ENSMUSG00000022682.8 ENSMUSG00000022682 ENSMUST00000023363 Rrn3 protein_coding Interval_169695 chr9 100453753 100454810 + 0 NA Intergenic Intergenic 3959 ENSMUSG00000101287.1 ENSMUSG00000101287 ENSMUST00000187637 Gm28166 lincRNA Interval_37184 chr12 59231380 59231624 + 0 NA Intergenic Intergenic 5674 ENSMUSG00000098820.1 ENSMUSG00000098820 ENSMUST00000184357 Gm27284 miRNA Interval_143393 chr7 6343507 6344511 + 0 NA promoter-TSS (ENSMUSG00000109080.1) lincRNA-promoter-TSS (ENSMUSG00000109080.1) -4 ENSMUSG00000109080.1 ENSMUSG00000109080 ENSMUST00000208218 Gm38944 lincRNA Interval_158714 chr8 85508387 85509141 + 0 NA intron (ENSMUSG00000031700.11, intron 4 of 10) protein_coding-intron (ENSMUSG00000031700.11, intron 4 of 11) -10645 ENSMUSG00000031700.11 ENSMUSG00000031700 ENSMUST00000143846 Gpt2 protein_coding Interval_3493 chr1 58951379 58951781 + 0 NA intron (ENSMUSG00000026028.12, intron 1 of 1) protein_coding-intron (ENSMUSG00000026028.12, intron 1 of 15) -21942 ENSMUSG00000026027.13 ENSMUSG00000026027 ENSMUST00000152318 Stradb protein_coding Interval_121 GL456359.1 1208 1453 + 0 NA NA NA NA NA Interval_76154 chr17 75619525 75620644 + 0 NA Intergenic Intergenic -41156 ENSMUSG00000117540.1 ENSMUSG00000117540 ENSMUST00000234396 Gm9360 processed_pseudogene Interval_63638 chr15 102478444 102480294 + 0 NA intron (ENSMUSG00000056851.14, intron 6 of 10) protein_coding-intron (ENSMUSG00000056851.14, intron 6 of 14) -6539 ENSMUSG00000099112.1 ENSMUSG00000099112 ENSMUST00000184881 Gm27406 misc_RNA Interval_927 chr1 13223004 13223491 + 0 NA intron (ENSMUSG00000005886.14, intron 3 of 12) protein_coding-intron (ENSMUSG00000005886.14, intron 3 of 22) 13187 ENSMUSG00000103495.1 ENSMUSG00000103495 ENSMUST00000195811 Gm37409 TEC Interval_107969 chr3 117906326 117906535 + 0 NA Intergenic Intergenic -17416 ENSMUSG00000104678.1 ENSMUSG00000104678 ENSMUST00000200520 Gm4321 processed_pseudogene Interval_124963 chr5 62345526 62345914 + 0 NA Intergenic Intergenic -82999 ENSMUSG00000105285.1 ENSMUSG00000105285 ENSMUST00000196463 Gm43238 TEC Interval_82242 chr18 69539614 69539849 + 0 NA intron (ENSMUSG00000053477.17, intron 1 of 5) protein_coding-intron (ENSMUSG00000053477.17, intron 7 of 20) -12232 ENSMUSG00000088659.1 ENSMUSG00000088659 ENSMUST00000158034 Gm24845 rRNA Interval_43212 chr13 25315542 25315842 + 0 NA Intergenic Intergenic -45722 ENSMUSG00000048978.14 ENSMUSG00000048978 ENSMUST00000126348 Nrsn1 protein_coding Interval_170733 chr9 110395169 110395430 + 0 NA intron (ENSMUSG00000036057.11, intron 2 of 24) protein_coding-intron (ENSMUSG00000036057.11, intron 2 of 24) -9052 ENSMUSG00000036057.11 ENSMUSG00000036057 ENSMUST00000199254 Ptpn23 protein_coding Interval_143813 chr7 16463359 16463843 + 0 NA intron (ENSMUSG00000001988.9, intron 5 of 9) protein_coding-intron (ENSMUSG00000001988.9, intron 5 of 11) -8212 ENSMUSG00000065893.1 ENSMUSG00000065893 ENSMUST00000083959 n-R5s151 rRNA Interval_144123 chr7 19530950 19532097 + 0 NA exon (ENSMUSG00000051403.9, exon 12 of 13) protein_coding-exon (ENSMUSG00000051403.9, exon 12 of 13) 1459 ENSMUSG00000051403.9 ENSMUSG00000051403 ENSMUST00000208678 Ppp1r37 protein_coding Interval_115931 chr4 106375455 106376114 + 0 NA intron (ENSMUSG00000028514.15, intron 24 of 67) protein_coding-intron (ENSMUSG00000028514.15, intron 24 of 67) 59571 ENSMUSG00000028514.15 ENSMUSG00000028514 ENSMUST00000150521 Usp24 protein_coding Interval_163012 chr9 14523594 14524828 + 0 NA TTS (ENSMUSG00000111612.1) processed_pseudogene-TTS (ENSMUSG00000111612.1) 1550 ENSMUSG00000111612.1 ENSMUSG00000111612 ENSMUST00000213361 Gm47090 processed_pseudogene Interval_45067 chr13 51833725 51834372 + 0 NA Intergenic Intergenic -12696 ENSMUSG00000021453.2 ENSMUSG00000021453 ENSMUST00000132480 Gadd45g protein_coding Interval_65116 chr16 19856925 19857823 + 0 NA Intergenic Intergenic -4607 ENSMUSG00000116980.1 ENSMUSG00000116980 ENSMUST00000232498 Gm49597 processed_pseudogene Interval_56236 chr14 114476415 114477388 + 0 NA Intergenic Intergenic -166098 ENSMUSG00000115658.1 ENSMUSG00000115658 ENSMUST00000226772 Gm19829 processed_pseudogene Interval_116485 chr4 114568238 114568520 + 0 NA intron (ENSMUSG00000070867.4, intron 2 of 6) protein_coding-intron (ENSMUSG00000070867.4, intron 2 of 6) 104961 ENSMUSG00000100998.1 ENSMUSG00000100998 ENSMUST00000189251 Gm28864 lincRNA Interval_159298 chr8 92975725 92976105 + 0 NA intron (ENSMUSG00000055368.14, intron 4 of 14) protein_coding-intron (ENSMUSG00000055368.14, intron 3 of 13) 15836 ENSMUSG00000055368.14 ENSMUSG00000055368 ENSMUST00000072939 Slc6a2 protein_coding Interval_91643 chr2 45171950 45172152 + 0 NA Intergenic Intergenic 15126 ENSMUSG00000100135.1 ENSMUSG00000100135 ENSMUST00000188811 Gm28643 lincRNA Interval_92511 chr2 60226128 60227254 + 0 NA intron (ENSMUSG00000026977.17, intron 2 of 10) protein_coding-intron (ENSMUSG00000026977.17, intron 1 of 9) 16778 ENSMUSG00000026977.17 ENSMUSG00000026977 ENSMUST00000136367 Marchf7 protein_coding Interval_53843 chr14 62664751 62665662 + 0 NA intron (ENSMUSG00000091155.1, intron 2 of 8) protein_coding-intron (ENSMUSG00000091155.1, intron 2 of 8) 1539 ENSMUSG00000091155.1 ENSMUSG00000091155 ENSMUST00000171692 Serpine3 protein_coding Interval_54744 chr14 74639438 74639887 + 0 NA Intergenic Intergenic -1178 ENSMUSG00000034997.5 ENSMUSG00000034997 ENSMUST00000036653 Htr2a protein_coding Interval_29104 chr11 80359701 80360253 + 0 NA TTS (ENSMUSG00000057181.15) protein_coding-TTS (ENSMUSG00000057181.15) 13574 ENSMUSG00000017692.8 ENSMUSG00000017692 ENSMUST00000157016 Rhbdl3 protein_coding Interval_174384 chrX 151007527 151008068 + 0 NA intron (ENSMUSG00000025266.11, intron 2 of 4) protein_coding-intron (ENSMUSG00000025266.11, intron 2 of 15) 1927 ENSMUSG00000081782.1 ENSMUSG00000081782 ENSMUST00000121540 Gm15152 processed_pseudogene Interval_97632 chr2 141289214 141289939 + 0 NA intron (ENSMUSG00000068205.14, intron 5 of 16) protein_coding-intron (ENSMUSG00000068205.14, intron 5 of 17) -2585 ENSMUSG00000086450.1 ENSMUSG00000086450 ENSMUST00000151538 Macrod2os1 antisense Interval_105028 chr3 79886088 79887074 + 0 NA TTS (ENSMUSG00000027955.16) protein_coding-TTS (ENSMUSG00000027955.16) 225 ENSMUSG00000102191.1 ENSMUSG00000102191 ENSMUST00000195082 Gm36569 antisense Interval_149323 chr7 97431887 97432256 + 0 NA Intergenic Intergenic -14552 ENSMUSG00000035686.8 ENSMUSG00000035686 ENSMUST00000206613 Thrsp protein_coding Interval_86599 chr19 41966763 41967088 + 0 NA intron (ENSMUSG00000025159.8, intron 1 of 29) protein_coding-intron (ENSMUSG00000025159.8, intron 2 of 29) -8263 ENSMUSG00000089102.1 ENSMUSG00000089102 ENSMUST00000158477 Gm23113 snRNA Interval_82680 chr18 75880815 75881660 + 0 NA intron (ENSMUSG00000044646.15, intron 1 of 5) protein_coding-intron (ENSMUSG00000044646.15, intron 1 of 4) 61022 ENSMUSG00000044646.15 ENSMUSG00000044646 ENSMUST00000167921 Zbtb7c protein_coding Interval_113010 chr4 46832951 46833736 + 0 NA intron (ENSMUSG00000039809.10, intron 2 of 4) protein_coding-intron (ENSMUSG00000039809.10, intron 3 of 18) 26559 ENSMUSG00000039809.10 ENSMUSG00000039809 ENSMUST00000206773 Gabbr2 protein_coding Interval_157590 chr8 71584556 71585042 + 0 NA intron (ENSMUSG00000031808.7, intron 10 of 12) protein_coding-intron (ENSMUSG00000031808.7, intron 11 of 13) -7492 ENSMUSG00000031807.10 ENSMUSG00000031807 ENSMUST00000143441 Pgls protein_coding Interval_105887 chr3 89926460 89926654 + 0 NA Intergenic Intergenic -13361 ENSMUSG00000027947.11 ENSMUSG00000027947 ENSMUST00000029559 Il6ra protein_coding Interval_77407 chr17 88505345 88506255 + 0 NA Intergenic Intergenic -27227 ENSMUSG00000103075.1 ENSMUSG00000103075 ENSMUST00000195386 Gm38109 TEC Interval_102053 chr3 16196351 16199156 + 0 NA intron (ENSMUSG00000047213.14, intron 5 of 5) protein_coding-intron (ENSMUSG00000047213.14, intron 3 of 4) 14517 ENSMUSG00000047213.14 ENSMUSG00000047213 ENSMUST00000108346 Ythdf3 protein_coding Interval_44645 chr13 46911210 46911559 + 0 NA intron (ENSMUSG00000021375.11, intron 2 of 2) protein_coding-intron (ENSMUSG00000021375.11, intron 2 of 37) 8795 ENSMUSG00000084466.1 ENSMUSG00000084466 ENSMUST00000122517 Gm22960 snRNA Interval_126792 chr5 92961427 92963168 + 0 NA exon (ENSMUSG00000029381.16, exon 9 of 10) protein_coding-exon (ENSMUSG00000029381.16, exon 9 of 10) -41534 ENSMUSG00000106930.1 ENSMUSG00000106930 ENSMUST00000200896 Gm6450 processed_pseudogene Interval_59934 chr15 62078841 62080628 + 0 NA promoter-TSS (ENSMUSG00000098308.1) misc_RNA-promoter-TSS (ENSMUSG00000098308.1) -511 ENSMUSG00000098308.1 ENSMUSG00000098308 ENSMUST00000185059 Gm27782 misc_RNA Interval_34354 chr12 3571763 3573187 + 0 NA promoter-TSS (ENSMUSG00000071454.13) protein_coding-promoter-TSS (ENSMUSG00000071454.13) 5 ENSMUSG00000071454.13 ENSMUSG00000071454 ENSMUST00000174293 Dtnb protein_coding Interval_13255 chr10 13641442 13642301 + 0 NA Intergenic Intergenic 14673 ENSMUSG00000112055.1 ENSMUSG00000112055 ENSMUST00000219684 Gm48773 lincRNA Interval_44173 chr13 41544773 41545145 + 0 NA TTS (ENSMUSG00000114585.1) antisense-TTS (ENSMUSG00000114585.1) 14954 ENSMUSG00000114545.1 ENSMUSG00000114545 ENSMUST00000225451 Gm32184 lincRNA Interval_167080 chr9 65123423 65124145 + 0 NA exon (ENSMUSG00000032816.15, exon 7 of 20) protein_coding-exon (ENSMUSG00000032816.15, exon 7 of 20) -17428 ENSMUSG00000032394.6 ENSMUSG00000032394 ENSMUST00000217135 Igdcc3 protein_coding Interval_63802 chr15 103530243 103531034 + 0 NA TTS (ENSMUSG00000022489.6) protein_coding-TTS (ENSMUSG00000022489.6) 7356 ENSMUSG00000022490.7 ENSMUSG00000022490 ENSMUST00000228813 Ppp1r1a protein_coding Interval_73762 chr17 43362649 43364367 + 0 NA intron (ENSMUSG00000056492.6, intron 1 of 20) protein_coding-intron (ENSMUSG00000056492.6, intron 1 of 20) 3057 ENSMUSG00000056492.6 ENSMUSG00000056492 ENSMUST00000225004 Adgrf5 protein_coding Interval_124429 chr5 46347396 46347846 + 0 NA Intergenic Intergenic -66723 ENSMUSG00000067321.5 ENSMUSG00000067321 ENSMUST00000121537 Gm7931 processed_pseudogene Interval_167357 chr9 67778666 67778957 + 0 NA Intergenic Intergenic -18603 ENSMUSG00000055125.7 ENSMUSG00000055125 ENSMUST00000186205 M5C1000I18Rik lincRNA Interval_132749 chr5 147574577 147576252 + 0 NA intron (ENSMUSG00000029648.13, intron 25 of 29) protein_coding-intron (ENSMUSG00000029648.13, intron 25 of 29) 71393 ENSMUSG00000029648.13 ENSMUSG00000029648 ENSMUST00000031652 Flt1 protein_coding Interval_148747 chr7 85073337 85073628 + 0 NA Intergenic Intergenic 10882 ENSMUSG00000092211.1 ENSMUSG00000092211 ENSMUST00000172624 Vmn2r-ps67 unprocessed_pseudogene Interval_82596 chr18 75366377 75367892 + 0 NA promoter-TSS (ENSMUSG00000025880.11) protein_coding-promoter-TSS (ENSMUSG00000025880.11) -46 ENSMUSG00000092569.1 ENSMUSG00000092569 ENSMUST00000174338 Gm20544 processed_transcript Interval_91403 chr2 38578396 38578953 + 0 NA intron (ENSMUSG00000026749.11, intron 8 of 9) protein_coding-intron (ENSMUSG00000026749.11, intron 8 of 9) -12320 ENSMUSG00000107535.1 ENSMUSG00000107535 ENSMUST00000203964 Gm44183 TEC Interval_113959 chr4 61822853 61823772 + 0 NA Intergenic Intergenic 11921 ENSMUSG00000058523.2 ENSMUSG00000058523 ENSMUST00000082287 Mup5 protein_coding Interval_127195 chr5 101020774 101021316 + 0 NA Intergenic Intergenic -107338 ENSMUSG00000106255.1 ENSMUSG00000106255 ENSMUST00000199211 Gm36793 lincRNA Interval_111390 chr4 20248414 20248664 + 0 NA intron (ENSMUSG00000055761.14, intron 4 of 4) protein_coding-intron (ENSMUSG00000055761.14, intron 4 of 4) -95167 ENSMUSG00000086017.1 ENSMUSG00000086017 ENSMUST00000141819 Gm11872 antisense Interval_67322 chr16 46073295 46073677 + 0 NA intron (ENSMUSG00000022657.9, intron 5 of 14) protein_coding-intron (ENSMUSG00000022657.9, intron 5 of 14) -12989 ENSMUSG00000118485.1 ENSMUSG00000118485 ENSMUST00000238776 Gm50487 processed_pseudogene Interval_19789 chr10 108848694 108848918 + 0 NA intron (ENSMUSG00000035864.14, intron 2 of 7) protein_coding-intron (ENSMUSG00000035864.14, intron 2 of 10) 70495 ENSMUSG00000111910.1 ENSMUSG00000111910 ENSMUST00000219164 Gm47472 TEC Interval_142804 chr6 145833144 145833399 + 0 NA Intergenic Intergenic -30026 ENSMUSG00000108126.1 ENSMUSG00000108126 ENSMUST00000203443 Gm43909 TEC Interval_18665 chr10 88930638 88932127 + 0 NA Intergenic Intergenic 45390 ENSMUSG00000020062.7 ENSMUSG00000020062 ENSMUST00000020255 Slc5a8 protein_coding Interval_85030 chr19 21673538 21675452 + 0 NA intron (ENSMUSG00000047368.4, intron 1 of 3) protein_coding-intron (ENSMUSG00000047368.4, intron 1 of 3) -6139 ENSMUSG00000047368.4 ENSMUSG00000047368 ENSMUST00000236549 Abhd17b protein_coding Interval_10161 chr1 166248907 166249259 + 0 NA Intergenic Intergenic -5110 ENSMUSG00000040612.13 ENSMUSG00000040612 ENSMUST00000193860 Ildr2 protein_coding Interval_143227 chr7 4623518 4624559 + 0 NA Intergenic Intergenic -2940 ENSMUSG00000108320.1 ENSMUSG00000108320 ENSMUST00000206485 Gm44877 antisense Interval_133027 chr5 149374853 149376288 + 0 NA exon (ENSMUSG00000107271.3, exon 3 of 7) lincRNA-exon (ENSMUSG00000107271.3, exon 3 of 7) 6522 ENSMUSG00000107271.3 ENSMUSG00000107271 ENSMUST00000202340 BC028471 lincRNA Interval_118467 chr4 131860660 131861535 + 0 NA promoter-TSS (ENSMUSG00000028910.12) protein_coding-promoter-TSS (ENSMUSG00000028910.12) 3360 ENSMUSG00000028910.12 ENSMUSG00000028910 ENSMUST00000128607 Mecr protein_coding Interval_124451 chr5 48125921 48126292 + 0 NA promoter-TSS (ENSMUSG00000105502.1) TEC-promoter-TSS (ENSMUSG00000105502.1) -978 ENSMUSG00000105502.1 ENSMUSG00000105502 ENSMUST00000197562 Gm42536 TEC Interval_146065 chr7 43623746 43625395 + 0 NA Intergenic Intergenic -10137 ENSMUSG00000030472.9 ENSMUSG00000030472 ENSMUST00000032663 Ceacam18 protein_coding Interval_147951 chr7 75827178 75828520 + 0 NA Intergenic Intergenic -20548 ENSMUSG00000055652.14 ENSMUSG00000055652 ENSMUST00000205887 Klhl25 protein_coding Interval_136703 chr6 58147670 58148265 + 0 NA Intergenic Intergenic 12082 ENSMUSG00000093708.1 ENSMUSG00000093708 ENSMUST00000176058 Gm20718 processed_pseudogene Interval_30008 chr11 88661862 88662532 + 0 NA intron (ENSMUSG00000069769.13, intron 5 of 5) protein_coding-intron (ENSMUSG00000069769.13, intron 5 of 13) -56448 ENSMUSG00000087574.1 ENSMUSG00000087574 ENSMUST00000125967 C030037D09Rik lincRNA Interval_150561 chr7 112452172 112452745 + 0 NA intron (ENSMUSG00000030770.15, intron 2 of 13) protein_coding-intron (ENSMUSG00000030770.15, intron 1 of 12) 24553 ENSMUSG00000030770.15 ENSMUSG00000030770 ENSMUST00000126047 Parva protein_coding Interval_138509 chr6 88812096 88813247 + 0 NA intron (ENSMUSG00000033174.17, intron 4 of 6) protein_coding-intron (ENSMUSG00000033174.17, intron 5 of 7) 10428 ENSMUSG00000107966.1 ENSMUSG00000107966 ENSMUST00000203158 Gm44001 TEC Interval_142316 chr6 140608438 140609155 + 0 NA Intergenic Intergenic 13627 ENSMUSG00000107750.1 ENSMUSG00000107750 ENSMUST00000204392 Gm44013 TEC Interval_22557 chr11 11762884 11763147 + 0 NA intron (ENSMUSG00000018654.17, intron 7 of 7) protein_coding-intron (ENSMUSG00000018654.17, intron 6 of 6) 45947 ENSMUSG00000035455.12 ENSMUSG00000035455 ENSMUST00000150714 Fignl1 protein_coding Interval_169637 chr9 99590583 99591391 + 0 NA Intergenic Intergenic 14907 ENSMUSG00000032469.12 ENSMUSG00000032469 ENSMUST00000136884 Dbr1 protein_coding Interval_61055 chr15 78982547 78984429 + 0 NA promoter-TSS (ENSMUSG00000033088.19) protein_coding-promoter-TSS (ENSMUSG00000033088.19) -18735 ENSMUSG00000099180.1 ENSMUSG00000099180 ENSMUST00000183598 Mir6956 miRNA Interval_105610 chr3 88094603 88095223 + 0 NA intron (ENSMUSG00000028068.14, intron 12 of 22) protein_coding-intron (ENSMUSG00000028068.14, intron 12 of 37) 12885 ENSMUSG00000028068.14 ENSMUSG00000028068 ENSMUST00000194772 Iqgap3 protein_coding Interval_67149 chr16 43919524 43919745 + 0 NA intron (ENSMUSG00000022701.18, intron 6 of 15) protein_coding-intron (ENSMUSG00000022701.18, intron 6 of 7) 29834 ENSMUSG00000022701.18 ENSMUSG00000022701 ENSMUST00000122440 Ccdc191 protein_coding Interval_155098 chr8 26471919 26472184 + 0 NA intron (ENSMUSG00000109961.1, intron 2 of 2) lincRNA-intron (ENSMUSG00000109961.1, intron 2 of 2) -3211 ENSMUSG00000109961.1 ENSMUSG00000109961 ENSMUST00000209999 Gm31983 lincRNA Interval_63866 chr16 4077371 4078733 + 0 NA promoter-TSS (ENSMUSG00000005981.11) protein_coding-promoter-TSS (ENSMUSG00000005981.11) -277 ENSMUSG00000005981.11 ENSMUSG00000005981 ENSMUST00000138594 Trap1 protein_coding Interval_59448 chr15 53232575 53232767 + 0 NA intron (ENSMUSG00000061731.9, intron 1 of 10) protein_coding-intron (ENSMUSG00000061731.9, intron 1 of 10) -124803 ENSMUSG00000061731.9 ENSMUSG00000061731 ENSMUST00000140798 Ext1 protein_coding Interval_120353 chr4 148068239 148068533 + 0 NA exon (ENSMUSG00000094320.1, exon 1 of 1) processed_pseudogene-exon (ENSMUSG00000094320.1, exon 1 of 1) 106 ENSMUSG00000094320.1 ENSMUSG00000094320 ENSMUST00000117487 Chchd2-ps processed_pseudogene Interval_103267 chr3 37656197 37657723 + 0 NA Intergenic Intergenic 12353 ENSMUSG00000106062.1 ENSMUSG00000106062 ENSMUST00000199414 Gm43820 TEC Interval_23567 chr11 23409073 23409365 + 0 NA intron (ENSMUSG00000056342.16, intron 33 of 79) protein_coding-intron (ENSMUSG00000056342.16, intron 33 of 79) 70448 ENSMUSG00000065591.1 ENSMUSG00000065591 ENSMUST00000083657 Gm22753 snRNA Interval_74306 chr17 48706839 48708086 + 0 NA Intergenic Intergenic -14755 ENSMUSG00000088483.1 ENSMUSG00000088483 ENSMUST00000157858 Gm23642 misc_RNA Interval_150349 chr7 109792745 109792969 + 0 NA Intergenic Intergenic -11314 ENSMUSG00000034825.14 ENSMUSG00000034825 ENSMUST00000207400 Nrip3 protein_coding Interval_54033 chr14 64638963 64640985 + 0 NA Intergenic Intergenic -12586 ENSMUSG00000060012.9 ENSMUSG00000060012 ENSMUST00000224677 Kif13b protein_coding Interval_4570 chr1 75163403 75163616 + 0 NA Intergenic Intergenic -5419 ENSMUSG00000026197.12 ENSMUSG00000026197 ENSMUST00000186227 Zfand2b protein_coding Interval_15466 chr10 47437530 47439222 + 0 NA Intergenic Intergenic -112704 ENSMUSG00000111072.1 ENSMUSG00000111072 ENSMUST00000217393 Gm9068 processed_pseudogene Interval_95398 chr2 108171296 108171538 + 0 NA Intergenic Intergenic -91375 ENSMUSG00000077411.1 ENSMUSG00000077411 ENSMUST00000104223 Gm23749 snoRNA Interval_95994 chr2 119028910 119029824 + 0 NA promoter-TSS (ENSMUSG00000039983.13) protein_coding-promoter-TSS (ENSMUSG00000039983.13) 26 ENSMUSG00000039983.13 ENSMUSG00000039983 ENSMUST00000110833 Ccdc32 protein_coding Interval_99301 chr2 158789052 158789661 + 0 NA Intergenic Intergenic 7948 ENSMUSG00000027654.2 ENSMUSG00000027654 ENSMUST00000151801 Fam83d protein_coding Interval_139595 chr6 102121877 102122133 + 0 NA Intergenic Intergenic 44196 ENSMUSG00000030075.10 ENSMUSG00000030075 ENSMUST00000032159 Cntn3 protein_coding Interval_149550 chr7 99508291 99509363 + 0 NA Intergenic Intergenic 11109 ENSMUSG00000065311.1 ENSMUSG00000065311 ENSMUST00000083377 n-R5s156 rRNA Interval_63174 chr15 99563421 99564043 + 0 NA Intergenic Intergenic -7540 ENSMUSG00000096448.2 ENSMUSG00000096448 ENSMUST00000178090 Gm5808 processed_pseudogene Interval_11126 chr1 179528596 179528851 + 0 NA TTS (ENSMUSG00000026492.11) protein_coding-TTS (ENSMUSG00000026492.11) 4944 ENSMUSG00000026492.11 ENSMUSG00000026492 ENSMUST00000129009 Tfb2m protein_coding Interval_21055 chr10 125640460 125641009 + 0 NA Intergenic Intergenic 128203 ENSMUSG00000112100.1 ENSMUSG00000112100 ENSMUST00000219250 Gm9102 processed_pseudogene Interval_45015 chr13 51441288 51441598 + 0 NA intron (ENSMUSG00000021448.8, intron 10 of 10) protein_coding-intron (ENSMUSG00000021448.8, intron 11 of 11) -22757 ENSMUSG00000112959.1 ENSMUSG00000112959 ENSMUST00000220470 Gm32834 lincRNA Interval_145848 chr7 40362731 40363421 + 0 NA promoter-TSS (ENSMUSG00000087914.1) misc_RNA-promoter-TSS (ENSMUSG00000087914.1) -374 ENSMUSG00000087914.1 ENSMUSG00000087914 ENSMUST00000157289 Gm24910 misc_RNA Interval_137873 chr6 83077626 83079055 + 0 NA promoter-TSS (ENSMUSG00000069678.10) protein_coding-promoter-TSS (ENSMUSG00000069678.10) -378 ENSMUSG00000069678.10 ENSMUSG00000069678 ENSMUST00000176372 Pcgf1 protein_coding Interval_144116 chr7 19495075 19495736 + 0 NA exon (ENSMUSG00000011263.16, exon 5 of 5) protein_coding-exon (ENSMUSG00000011263.16, exon 5 of 5) 12962 ENSMUSG00000057667.7 ENSMUSG00000057667 ENSMUST00000077408 Bloc1s3 protein_coding Interval_153768 chr8 8101088 8101304 + 0 NA intron (ENSMUSG00000109127.1, intron 3 of 5) lincRNA-intron (ENSMUSG00000109127.1, intron 3 of 5) 34530 ENSMUSG00000109566.1 ENSMUSG00000109566 ENSMUST00000207352 Gm31401 lincRNA Interval_127743 chr5 107271972 107272521 + 0 NA intron (ENSMUSG00000029287.14, intron 1 of 6) protein_coding-intron (ENSMUSG00000029287.14, intron 1 of 16) -15742 ENSMUSG00000106671.1 ENSMUSG00000106671 ENSMUST00000197184 Gm42900 TEC Interval_28360 chr11 75363632 75364253 + 0 NA intron (ENSMUSG00000018809.2, intron 2 of 2) protein_coding-intron (ENSMUSG00000018809.2, intron 2 of 10) 15447 ENSMUSG00000018809.2 ENSMUSG00000018809 ENSMUST00000135774 Smyd4 protein_coding Interval_15507 chr10 50008035 50008799 + 0 NA Intergenic Intergenic -26536 ENSMUSG00000111142.1 ENSMUSG00000111142 ENSMUST00000214421 Gm48131 TEC Interval_76883 chr17 84719853 84721071 + 0 NA intron (ENSMUSG00000024120.12, intron 4 of 6) protein_coding-intron (ENSMUSG00000024120.12, intron 30 of 37) 10722 ENSMUSG00000024120.12 ENSMUSG00000024120 ENSMUST00000159222 Lrpprc protein_coding Interval_86538 chr19 41572772 41574691 + 0 NA intron (ENSMUSG00000025019.17, intron 7 of 7) protein_coding-intron (ENSMUSG00000025019.17, intron 7 of 7) -2136 ENSMUSG00000025019.17 ENSMUSG00000025019 ENSMUST00000172371 Lcor protein_coding Interval_123861 chr5 36047086 36047294 + 0 NA intron (ENSMUSG00000029093.14, intron 11 of 26) protein_coding-intron (ENSMUSG00000029093.14, intron 11 of 26) 63002 ENSMUSG00000029094.12 ENSMUSG00000029094 ENSMUST00000201482 Afap1 protein_coding Interval_97226 chr2 132357970 132358669 + 0 NA intron (ENSMUSG00000050558.13, intron 2 of 2) protein_coding-intron (ENSMUSG00000050558.13, intron 2 of 2) 27102 ENSMUSG00000050558.13 ENSMUSG00000050558 ENSMUST00000145995 Prokr2 protein_coding Interval_130188 chr5 124817243 124818199 + 0 NA TTS (ENSMUSG00000105583.1) antisense-TTS (ENSMUSG00000105583.1) 591 ENSMUSG00000105583.1 ENSMUSG00000105583 ENSMUST00000197269 Gm43777 antisense Interval_44105 chr13 40910102 40910336 + 0 NA intron (ENSMUSG00000114662.1, intron 1 of 1) protein_coding-intron (ENSMUSG00000021360.16, intron 1 of 2) 1988 ENSMUSG00000114601.1 ENSMUSG00000114601 ENSMUST00000225964 Gm48188 processed_pseudogene Interval_162272 chr8 126592055 126595124 + 0 NA exon (ENSMUSG00000051495.7, exon 1 of 2) protein_coding-exon (ENSMUSG00000051495.7, exon 1 of 2) 397 ENSMUSG00000051495.7 ENSMUSG00000051495 ENSMUST00000054960 Irf2bp2 protein_coding Interval_148213 chr7 79914397 79915481 + 0 NA intron (ENSMUSG00000063801.7, intron 4 of 5) protein_coding-intron (ENSMUSG00000063801.7, intron 3 of 5) -4030 ENSMUSG00000097685.2 ENSMUSG00000097685 ENSMUST00000205705 Gm26646 antisense Interval_129089 chr5 117341729 117342383 + 0 NA intron (ENSMUSG00000066894.14, intron 4 of 8) protein_coding-intron (ENSMUSG00000066894.14, intron 4 of 8) 7287 ENSMUSG00000081274.2 ENSMUSG00000081274 ENSMUST00000122416 Gm15727 processed_pseudogene Interval_149774 chr7 101377522 101378422 + 0 NA promoter-TSS (ENSMUSG00000032812.18) protein_coding-promoter-TSS (ENSMUSG00000032812.18) -7636 ENSMUSG00000032812.18 ENSMUSG00000032812 ENSMUST00000124637 Arap1 protein_coding Interval_9303 chr1 156051415 156051908 + 0 NA TTS (ENSMUSG00000050565.16) protein_coding-TTS (ENSMUSG00000050565.16) 15889 ENSMUSG00000050565.16 ENSMUSG00000050565 ENSMUST00000125371 Tor1aip2 protein_coding Interval_158712 chr8 85492155 85493199 + 0 NA promoter-TSS (ENSMUSG00000031700.11) protein_coding-promoter-TSS (ENSMUSG00000031700.11) -26732 ENSMUSG00000031700.11 ENSMUSG00000031700 ENSMUST00000143846 Gpt2 protein_coding Interval_54973 chr14 76592465 76593380 + 0 NA Intergenic Intergenic -36033 ENSMUSG00000052584.10 ENSMUSG00000052584 ENSMUST00000228524 Serp2 protein_coding Interval_87705 chr19 55233963 55234428 + 0 NA intron (ENSMUSG00000055523.7, intron 3 of 20) protein_coding-intron (ENSMUSG00000055523.7, intron 3 of 20) 7041 ENSMUSG00000055523.7 ENSMUSG00000055523 ENSMUST00000069183 Gucy2g protein_coding Interval_42060 chr13 7083481 7083684 + 0 NA Intergenic Intergenic -7266 ENSMUSG00000114017.1 ENSMUSG00000114017 ENSMUST00000222208 Gm40662 lincRNA Interval_157823 chr8 74409762 74410039 + 0 NA Intergenic Intergenic 139653 ENSMUSG00000098378.1 ENSMUSG00000098378 ENSMUST00000183704 Gm27864 miRNA Interval_113348 chr4 53680314 53681432 + 0 NA intron (ENSMUSG00000054752.16, intron 7 of 12) protein_coding-intron (ENSMUSG00000054752.16, intron 7 of 12) 18577 ENSMUSG00000081516.1 ENSMUSG00000081516 ENSMUST00000117239 Gm12470 processed_pseudogene Interval_19194 chr10 95414462 95418072 + 0 NA promoter-TSS (ENSMUSG00000020027.18) protein_coding-promoter-TSS (ENSMUSG00000020027.18) -783 ENSMUSG00000020027.18 ENSMUSG00000020027 ENSMUST00000145847 Socs2 protein_coding Interval_23887 chr11 27704365 27704667 + 0 NA Intergenic Intergenic -178596 ENSMUSG00000084064.1 ENSMUSG00000084064 ENSMUST00000112483 Gm12079 processed_pseudogene Interval_134079 chr6 18955273 18955498 + 0 NA Intergenic Intergenic 72674 ENSMUSG00000106819.1 ENSMUSG00000106819 ENSMUST00000202002 Gm43498 processed_pseudogene Interval_130081 chr5 124133239 124133772 + 0 NA intron (ENSMUSG00000029406.15, intron 8 of 24) protein_coding-intron (ENSMUSG00000029406.15, intron 7 of 23) 16194 ENSMUSG00000029404.15 ENSMUSG00000029404 ENSMUST00000196401 Arl6ip4 protein_coding Interval_171482 chr9 118684100 118684601 + 0 NA intron (ENSMUSG00000039115.13, intron 13 of 27) protein_coding-intron (ENSMUSG00000039115.13, intron 13 of 27) -94155 ENSMUSG00000110676.1 ENSMUSG00000110676 ENSMUST00000212679 Gm45897 lincRNA Interval_81852 chr18 65290700 65291314 + 0 NA intron (ENSMUSG00000032845.16, intron 5 of 6) protein_coding-intron (ENSMUSG00000032845.16, intron 9 of 12) 13449 ENSMUSG00000032845.16 ENSMUSG00000032845 ENSMUST00000182629 Alpk2 protein_coding Interval_153539 chr8 3312053 3312410 + 0 NA Intergenic Intergenic -41206 ENSMUSG00000004568.13 ENSMUSG00000004568 ENSMUST00000145360 Arhgef18 protein_coding Interval_63756 chr15 103255083 103255558 + 0 NA exon (ENSMUSG00000058794.12, exon 1 of 3) protein_coding-exon (ENSMUSG00000058794.12, exon 1 of 3) -3804 ENSMUSG00000058794.12 ENSMUSG00000058794 ENSMUST00000132438 Nfe2 protein_coding Interval_106491 chr3 96674369 96674614 + 0 NA intron (ENSMUSG00000038354.13, intron 1 of 13) protein_coding-intron (ENSMUSG00000038354.13, intron 1 of 12) -5602 ENSMUSG00000038354.13 ENSMUSG00000038354 ENSMUST00000130429 Ankrd35 protein_coding Interval_83726 chr19 3977662 3977867 + 0 NA intron (ENSMUSG00000075296.5, intron 2 of 9) protein_coding-intron (ENSMUSG00000075296.5, intron 2 of 9) 5436 ENSMUSG00000075296.5 ENSMUSG00000075296 ENSMUST00000143380 Aldh3b2 protein_coding Interval_31714 chr11 102392906 102394574 + 0 NA exon (ENSMUSG00000006575.14, exon 1 of 11) protein_coding-exon (ENSMUSG00000006575.14, exon 1 of 11) -5427 ENSMUSG00000006575.14 ENSMUSG00000006575 ENSMUST00000132876 Rundc3a protein_coding Interval_101472 chr2 181629281 181631145 + 0 NA intron (ENSMUSG00000002455.14, intron 6 of 11) protein_coding-intron (ENSMUSG00000002455.14, intron 6 of 20) -26821 ENSMUSG00000108976.1 ENSMUSG00000108976 ENSMUST00000207856 Gm29797 protein_coding Interval_115273 chr4 95116836 95117903 + 0 NA intron (ENSMUSG00000087366.7, intron 2 of 3) antisense-intron (ENSMUSG00000087366.7, intron 2 of 4) -25950 ENSMUSG00000085377.1 ENSMUSG00000085377 ENSMUST00000156086 4930551L18Rik lincRNA Interval_93865 chr2 77719033 77719261 + 0 NA intron (ENSMUSG00000027016.17, intron 3 of 3) protein_coding-intron (ENSMUSG00000027016.17, intron 1 of 7) -15875 ENSMUSG00000027016.17 ENSMUSG00000027016 ENSMUST00000129077 Zfp385b protein_coding Interval_2930 chr1 51094798 51095009 + 0 NA intron (ENSMUSG00000026109.14, intron 5 of 9) protein_coding-intron (ENSMUSG00000026109.14, intron 5 of 9) 46319 ENSMUSG00000101242.1 ENSMUSG00000101242 ENSMUST00000189560 Gm28319 antisense Interval_122627 chr5 24329186 24329957 + 0 NA promoter-TSS (ENSMUSG00000038319.14) protein_coding-promoter-TSS (ENSMUSG00000038319.14) -3052 ENSMUSG00000038319.14 ENSMUSG00000038319 ENSMUST00000142197 Kcnh2 protein_coding Interval_4076 chr1 67477277 67477690 + 0 NA Intergenic Intergenic -107570 ENSMUSG00000082473.1 ENSMUSG00000082473 ENSMUST00000119302 Kif22-ps processed_pseudogene Interval_25326 chr11 46395685 46396768 + 0 NA promoter-TSS (ENSMUSG00000020401.6) protein_coding-promoter-TSS (ENSMUSG00000020401.6) -333 ENSMUSG00000020401.6 ENSMUSG00000020401 ENSMUST00000063166 Fam71b protein_coding Interval_62640 chr15 95876814 95877271 + 0 NA intron (ENSMUSG00000064210.7, intron 3 of 20) protein_coding-intron (ENSMUSG00000064210.7, intron 2 of 19) 2775 ENSMUSG00000092978.1 ENSMUSG00000092978 ENSMUST00000175237 Gm25070 miRNA Interval_72474 chr17 30046036 30046235 + 0 NA intron (ENSMUSG00000044477.12, intron 1 of 4) protein_coding-intron (ENSMUSG00000044477.12, intron 1 of 4) -41444 ENSMUSG00000117371.1 ENSMUSG00000117371 ENSMUST00000233996 Gm50019 bidirectional_promoter_lncRNA Interval_10596 chr1 172119502 172120130 + 0 NA TTS (ENSMUSG00000026553.17) protein_coding-TTS (ENSMUSG00000026553.17) -6940 ENSMUSG00000003464.13 ENSMUSG00000003464 ENSMUST00000133081 Pex19 protein_coding Interval_62566 chr15 94680885 94681472 + 0 NA TTS (ENSMUSG00000095169.1) snoRNA-TTS (ENSMUSG00000095169.1) 208 ENSMUSG00000095169.1 ENSMUSG00000095169 ENSMUST00000103977 Gm25546 snoRNA Interval_26755 chr11 60232024 60233476 + 0 NA intron (ENSMUSG00000000538.18, intron 4 of 5) protein_coding-intron (ENSMUSG00000000538.18, intron 12 of 13) 6426 ENSMUSG00000000538.18 ENSMUSG00000000538 ENSMUST00000142225 Tom1l2 protein_coding Interval_20560 chr10 119038941 119039390 + 0 NA intron (ENSMUSG00000112778.1, intron 3 of 3) lincRNA-intron (ENSMUSG00000112778.1, intron 3 of 3) 11334 ENSMUSG00000112778.1 ENSMUSG00000112778 ENSMUST00000220074 Gm33677 lincRNA Interval_106312 chr3 95302129 95303178 + 0 NA intron (ENSMUSG00000015702.13, intron 5 of 13) protein_coding-intron (ENSMUSG00000015702.13, intron 5 of 12) 4151 ENSMUSG00000015702.13 ENSMUSG00000015702 ENSMUST00000123365 Anxa9 protein_coding Interval_108331 chr3 124193576 124193815 + 0 NA Intergenic Intergenic -52542 ENSMUSG00000104531.1 ENSMUSG00000104531 ENSMUST00000196150 Gm43731 lincRNA Interval_125361 chr5 66427128 66428665 + 0 NA intron (ENSMUSG00000029207.16, intron 5 of 5) protein_coding-intron (ENSMUSG00000029207.16, intron 5 of 17) 4230 ENSMUSG00000106732.1 ENSMUSG00000106732 ENSMUST00000202492 Gm43792 TEC Interval_79777 chr18 35070420 35071241 + 0 NA intron (ENSMUSG00000117727.1, intron 1 of 1) processed_transcript-intron (ENSMUSG00000118380.1, intron 4 of 5) 16793 ENSMUSG00000117727.1 ENSMUSG00000117727 ENSMUST00000238134 Gm3587 lincRNA Interval_41910 chr13 4249084 4249606 + 0 NA TTS (ENSMUSG00000071551.13) protein_coding-TTS (ENSMUSG00000071551.13) 610 ENSMUSG00000086265.1 ENSMUSG00000086265 ENSMUST00000132531 Marcksl1-ps4 processed_pseudogene Interval_34535 chr12 4935149 4935787 + 0 NA intron (ENSMUSG00000052812.5, intron 1 of 6) protein_coding-intron (ENSMUSG00000052812.5, intron 1 of 30) -28204 ENSMUSG00000020634.12 ENSMUSG00000020634 ENSMUST00000141360 Ubxn2a protein_coding Interval_135365 chr6 38642392 38642686 + 0 NA Intergenic Intergenic -5306 ENSMUSG00000071537.6 ENSMUSG00000071537 ENSMUST00000201345 Klrg2 protein_coding Interval_92669 chr2 62355941 62357489 + 0 NA promoter-TSS (ENSMUSG00000087518.1) antisense-promoter-TSS (ENSMUSG00000087518.1) -356 ENSMUSG00000087518.1 ENSMUSG00000087518 ENSMUST00000136879 Gm13561 antisense Interval_158537 chr8 84331292 84331550 + 0 NA Intergenic Intergenic -7218 ENSMUSG00000034656.18 ENSMUSG00000034656 ENSMUST00000130507 Cacna1a protein_coding Interval_54172 chr14 65952936 65954168 + 0 NA exon (ENSMUSG00000034463.4, exon 1 of 6) protein_coding-exon (ENSMUSG00000034463.4, exon 1 of 6) 383 ENSMUSG00000034463.4 ENSMUSG00000034463 ENSMUST00000042046 Scara3 protein_coding Interval_120002 chr4 141313918 141314957 + 0 NA intron (ENSMUSG00000006445.3, intron 3 of 16) protein_coding-intron (ENSMUSG00000006445.3, intron 3 of 16) -2476 ENSMUSG00000006445.3 ENSMUSG00000006445 ENSMUST00000149002 Epha2 protein_coding Interval_26967 chr11 61937922 61938154 + 0 NA Intergenic Intergenic -1486 ENSMUSG00000064939.1 ENSMUSG00000064939 ENSMUST00000083005 Gm23721 snRNA Interval_37441 chr12 68860515 68860726 + 0 NA Intergenic Intergenic -48323 ENSMUSG00000112933.1 ENSMUSG00000112933 ENSMUST00000223294 Gm47491 processed_pseudogene Interval_63797 chr15 103495874 103496053 + 0 NA intron (ENSMUSG00000022488.9, intron 11 of 11) protein_coding-intron (ENSMUSG00000022488.9, intron 30 of 30) 16815 ENSMUSG00000022488.9 ENSMUSG00000022488 ENSMUST00000230276 Nckap1l protein_coding Interval_33511 chr11 116968245 116969706 + 0 NA intron (ENSMUSG00000043857.16, intron 4 of 5) protein_coding-intron (ENSMUSG00000043857.16, intron 10 of 17) 21640 ENSMUSG00000043857.16 ENSMUSG00000043857 ENSMUST00000126757 Mgat5b protein_coding Interval_55329 chr14 83097736 83097946 + 0 NA Intergenic Intergenic 205004 ENSMUSG00000115031.1 ENSMUSG00000115031 ENSMUST00000228219 Gm49051 processed_pseudogene Interval_73113 chr17 34892962 34895318 + 0 NA promoter-TSS (ENSMUSG00000049823.9) protein_coding-promoter-TSS (ENSMUSG00000049823.9) 1417 ENSMUSG00000024371.14 ENSMUSG00000024371 ENSMUST00000174279 C2 protein_coding Interval_9201 chr1 155035088 155036379 + 0 NA intron (ENSMUSG00000101880.1, intron 1 of 3) lincRNA-intron (ENSMUSG00000101880.1, intron 1 of 3) 3994 ENSMUSG00000101433.1 ENSMUSG00000101433 ENSMUST00000191584 Gm29441 processed_pseudogene Interval_46464 chr13 66366185 66366594 + 0 NA intron (ENSMUSG00000094499.3, intron 4 of 9) lincRNA-intron (ENSMUSG00000114616.1, intron 2 of 2) -23454 ENSMUSG00000114729.1 ENSMUSG00000114729 ENSMUST00000224620 C330022B21Rik processed_pseudogene Interval_121976 chr5 12872603 12873765 + 0 NA Intergenic Intergenic -67186 ENSMUSG00000094310.1 ENSMUSG00000094310 ENSMUST00000180047 Gm23243 miRNA Interval_9933 chr1 164217486 164218130 + 0 NA intron (ENSMUSG00000026579.8, intron 24 of 24) protein_coding-intron (ENSMUSG00000026579.8, intron 24 of 24) -31445 ENSMUSG00000040918.12 ENSMUSG00000040918 ENSMUST00000160773 Slc19a2 protein_coding Interval_87393 chr19 48389767 48390181 + 0 NA intron (ENSMUSG00000063434.6, intron 1 of 26) protein_coding-intron (ENSMUSG00000063434.6, intron 1 of 26) -39986 ENSMUSG00000063434.6 ENSMUSG00000063434 ENSMUST00000235967 Sorcs3 protein_coding Interval_25432 chr11 48347199 48347739 + 0 NA Intergenic Intergenic -57156 ENSMUSG00000081952.1 ENSMUSG00000081952 ENSMUST00000120545 Gm12178 processed_pseudogene Interval_149055 chr7 92732513 92733399 + 0 NA exon (ENSMUSG00000098041.1, exon 2 of 2) lincRNA-exon (ENSMUSG00000098041.1, exon 2 of 2) 3116 ENSMUSG00000098041.1 ENSMUSG00000098041 ENSMUST00000182453 Gm26981 lincRNA Interval_150335 chr7 109694664 109695800 + 0 NA intron (ENSMUSG00000031024.13, intron 1 of 3) protein_coding-intron (ENSMUSG00000031024.13, intron 1 of 3) -4293 ENSMUSG00000109499.1 ENSMUSG00000109499 ENSMUST00000207292 Gm44864 antisense Interval_137806 chr6 82681133 82682693 + 0 NA intron (ENSMUSG00000107453.1, intron 1 of 1) protein_coding-intron (ENSMUSG00000030042.15, intron 1 of 3) 1781 ENSMUSG00000107453.1 ENSMUSG00000107453 ENSMUST00000203711 Gm44145 antisense Interval_145446 chr7 34804658 34805060 + 0 NA intron (ENSMUSG00000060402.8, intron 1 of 2) protein_coding-intron (ENSMUSG00000060402.8, intron 1 of 3) -51047 ENSMUSG00000060402.8 ENSMUSG00000060402 ENSMUST00000205390 Chst8 protein_coding Interval_165322 chr9 46292930 46293731 + 0 NA exon (ENSMUSG00000032077.5, exon 9 of 9) protein_coding-exon (ENSMUSG00000032077.5, exon 9 of 9) 1982 ENSMUSG00000032077.5 ENSMUSG00000032077 ENSMUST00000213932 Bud13 protein_coding Interval_23926 chr11 28409024 28409247 + 0 NA intron (ENSMUSG00000032878.16, intron 3 of 5) protein_coding-intron (ENSMUSG00000032878.16, intron 3 of 3) 24975 ENSMUSG00000032878.16 ENSMUSG00000032878 ENSMUST00000109501 Ccdc85a protein_coding Interval_168530 chr9 83145281 83147025 + 0 NA exon (ENSMUSG00000101144.2, exon 1 of 2) processed_transcript-exon (ENSMUSG00000101144.2, exon 1 of 2) 238 ENSMUSG00000101144.2 ENSMUSG00000101144 ENSMUST00000187589 Gm29054 processed_transcript Interval_28311 chr11 75129487 75129703 + 0 NA intron (ENSMUSG00000038290.15, intron 4 of 4) protein_coding-intron (ENSMUSG00000038290.15, intron 13 of 18) -30038 ENSMUSG00000038290.15 ENSMUSG00000038290 ENSMUST00000153226 Smg6 protein_coding Interval_21826 chr11 4594026 4595180 + 0 NA exon (ENSMUSG00000034354.17, exon 1 of 18) protein_coding-exon (ENSMUSG00000034354.17, exon 1 of 18) -25464 ENSMUSG00000079010.1 ENSMUSG00000079010 ENSMUST00000109941 Gm11032 protein_coding Interval_107316 chr3 105748032 105748295 + 0 NA intron (ENSMUSG00000068798.10, intron 1 of 7) protein_coding-intron (ENSMUSG00000068798.10, intron 2 of 7) 2165 ENSMUSG00000068798.10 ENSMUSG00000068798 ENSMUST00000198004 Rap1a protein_coding Interval_18771 chr10 90380938 90381751 + 0 NA intron (ENSMUSG00000058589.14, intron 12 of 25) protein_coding-intron (ENSMUSG00000058589.14, intron 12 of 17) -69566 ENSMUSG00000088221.1 ENSMUSG00000088221 ENSMUST00000157596 Gm22602 snRNA Interval_19365 chr10 98007961 98009007 + 0 NA Intergenic Intergenic -41394 ENSMUSG00000074776.4 ENSMUSG00000074776 ENSMUST00000099324 Gm10754 lincRNA Interval_91069 chr2 34801704 34802888 + 0 NA Intergenic Intergenic -2384 ENSMUSG00000070953.13 ENSMUSG00000070953 ENSMUST00000144113 Rabepk protein_coding Interval_112753 chr4 44623986 44624717 + 0 NA intron (ENSMUSG00000014030.15, intron 1 of 5) protein_coding-intron (ENSMUSG00000014030.15, intron 6 of 9) -16783 ENSMUSG00000092761.1 ENSMUSG00000092761 ENSMUST00000175020 Mir5120 miRNA Interval_1653 chr1 30817526 30818346 + 0 NA intron (ENSMUSG00000048874.15, intron 5 of 5) protein_coding-intron (ENSMUSG00000048874.15, intron 7 of 14) -7224 ENSMUSG00000048874.15 ENSMUSG00000048874 ENSMUST00000185604 Phf3 protein_coding Interval_153031 chr7 140974958 140975376 + 0 NA Intergenic Intergenic 7946 ENSMUSG00000025491.14 ENSMUSG00000025491 ENSMUST00000026564 Ifitm1 protein_coding Interval_121477 chr4 156052369 156052652 + 0 NA TTS (ENSMUSG00000086549.1) processed_transcript-TTS (ENSMUSG00000086549.1) 1477 ENSMUSG00000065427.1 ENSMUSG00000065427 ENSMUST00000083493 Mir429 miRNA Interval_105625 chr3 88214033 88216111 + 0 NA promoter-TSS (ENSMUSG00000092988.1) miRNA-promoter-TSS (ENSMUSG00000092988.1) -99 ENSMUSG00000092988.1 ENSMUSG00000092988 ENSMUST00000175247 Mir3093 miRNA Interval_4842 chr1 80179990 80181431 + 0 NA Intergenic Intergenic -4009 ENSMUSG00000099552.1 ENSMUSG00000099552 ENSMUST00000185548 9830004L10Rik lincRNA Interval_38842 chr12 83302792 83303081 + 0 NA intron (ENSMUSG00000021221.15, intron 6 of 10) protein_coding-intron (ENSMUSG00000021221.15, intron 4 of 6) 180722 ENSMUSG00000103387.1 ENSMUSG00000103387 ENSMUST00000192978 1700030I03Rik TEC Interval_53788 chr14 61749368 61751096 + 0 NA Intergenic Intergenic 66722 ENSMUSG00000104187.1 ENSMUSG00000104187 ENSMUST00000194021 Gm37820 TEC Interval_102239 chr3 19813597 19813922 + 0 NA Intergenic Intergenic 44886 ENSMUSG00000106182.1 ENSMUSG00000106182 ENSMUST00000197778 Gm7442 processed_pseudogene Interval_73293 chr17 36016461 36016807 + 0 NA intron (ENSMUSG00000053835.17, intron 2 of 5) protein_coding-intron (ENSMUSG00000053835.17, intron 2 of 5) 3891 ENSMUSG00000053835.17 ENSMUSG00000053835 ENSMUST00000174063 H2-T24 protein_coding Interval_51191 chr14 24602342 24603182 + 0 NA intron (ENSMUSG00000048628.5, intron 3 of 4) lincRNA-intron (ENSMUSG00000048628.5, intron 3 of 4) 14705 ENSMUSG00000048628.5 ENSMUSG00000048628 ENSMUST00000062438 4930542C16Rik lincRNA Interval_165408 chr9 47571366 47572255 + 0 NA intron (ENSMUSG00000032076.20, intron 1 of 8) protein_coding-intron (ENSMUSG00000032076.20, intron 1 of 8) 41458 ENSMUSG00000032076.20 ENSMUSG00000032076 ENSMUST00000034581 Cadm1 protein_coding Interval_151842 chr7 127061500 127062327 + 0 NA intron (ENSMUSG00000049350.6, intron 1 of 4) protein_coding-intron (ENSMUSG00000049350.6, intron 1 of 4) -6543 ENSMUSG00000108327.1 ENSMUSG00000108327 ENSMUST00000206939 Gm44939 lincRNA Interval_20208 chr10 115883115 115883914 + 0 NA Intergenic Intergenic -13992 ENSMUSG00000112513.1 ENSMUSG00000112513 ENSMUST00000220081 4930422I22Rik antisense Interval_151895 chr7 127386201 127387675 + 0 NA exon (ENSMUSG00000030823.6, exon 1 of 3) protein_coding-exon (ENSMUSG00000030823.6, exon 1 of 3) 175 ENSMUSG00000030823.6 ENSMUSG00000030823 ENSMUST00000164345 9130019O22Rik protein_coding Interval_88961 chr2 13572207 13572602 + 0 NA Intergenic Intergenic -1877 ENSMUSG00000026728.9 ENSMUSG00000026728 ENSMUST00000148248 Vim protein_coding Interval_128748 chr5 115058481 115058996 + 0 NA intron (ENSMUSG00000029550.11, intron 2 of 2) protein_coding-intron (ENSMUSG00000029550.11, intron 1 of 10) -4898 ENSMUSG00000086167.3 ENSMUSG00000086167 ENSMUST00000148801 Gm13827 processed_pseudogene Interval_141804 chr6 134617804 134618161 + 0 NA intron (ENSMUSG00000032718.4, intron 2 of 3) protein_coding-intron (ENSMUSG00000032718.4, intron 2 of 3) -7000 ENSMUSG00000108121.1 ENSMUSG00000108121 ENSMUST00000203765 Gm43952 TEC Interval_53044 chr14 53806036 53806778 + 0 NA promoter-TSS (ENSMUSG00000096397.7) TR_V_gene-promoter-TSS (ENSMUSG00000096397.7) -232 ENSMUSG00000096397.7 ENSMUSG00000096397 ENSMUST00000186545 Trav17 TR_V_gene Interval_71396 chr17 23342851 23343173 + 0 NA promoter-TSS (ENSMUSG00000091076.2) protein_coding-promoter-TSS (ENSMUSG00000091076.2) -729 ENSMUSG00000091076.2 ENSMUSG00000091076 ENSMUST00000234552 Vmn2r115 protein_coding Interval_138971 chr6 93912005 93913968 + 0 NA promoter-TSS (ENSMUSG00000045095.16) protein_coding-promoter-TSS (ENSMUSG00000045095.16) -482 ENSMUSG00000045095.16 ENSMUSG00000045095 ENSMUST00000203034 Magi1 protein_coding Interval_139637 chr6 104078185 104078568 + 0 NA Intergenic Intergenic -113737 ENSMUSG00000108172.1 ENSMUSG00000108172 ENSMUST00000203981 Gm21054 processed_pseudogene Interval_141041 chr6 124569631 124570803 + 0 NA promoter-TSS (ENSMUSG00000098470.1) protein_coding-promoter-TSS (ENSMUSG00000098470.1) -77 ENSMUSG00000098470.1 ENSMUSG00000098470 ENSMUST00000184647 C1rb protein_coding Interval_67092 chr16 42854881 42855080 + 0 NA intron (ENSMUSG00000075070.6, intron 1 of 1) lincRNA-intron (ENSMUSG00000075070.6, intron 1 of 1) 20760 ENSMUSG00000075070.6 ENSMUSG00000075070 ENSMUST00000130331 4932412D23Rik lincRNA Interval_71992 chr17 27466091 27466885 + 0 NA intron (ENSMUSG00000063239.17, intron 2 of 9) protein_coding-intron (ENSMUSG00000063239.17, intron 3 of 10) 2401 ENSMUSG00000116568.1 ENSMUSG00000116568 ENSMUST00000231818 Gm49790 TEC Interval_34043 chr11 120159702 120161095 + 0 NA Intergenic Intergenic -9086 ENSMUSG00000061306.16 ENSMUSG00000061306 ENSMUST00000152859 Slc38a10 protein_coding Interval_47940 chr13 94517890 94518595 + 0 NA TTS (ENSMUSG00000084423.1) miRNA-TTS (ENSMUSG00000084423.1) 1080 ENSMUSG00000084423.1 ENSMUSG00000084423 ENSMUST00000122474 Gm25109 miRNA Interval_150965 chr7 116834281 116835240 + 0 NA Intergenic Intergenic -8909 ENSMUSG00000107383.1 ENSMUSG00000107383 ENSMUST00000201488 Gm4366 processed_pseudogene Interval_129106 chr5 117438305 117442176 + 0 NA intron (ENSMUSG00000061578.8, intron 1 of 20) protein_coding-intron (ENSMUSG00000061578.8, intron 1 of 3) 26240 ENSMUSG00000061578.8 ENSMUSG00000061578 ENSMUST00000180430 Ksr2 protein_coding Interval_100050 chr2 166749188 166749948 + 0 NA Intergenic Intergenic -19177 ENSMUSG00000088063.1 ENSMUSG00000088063 ENSMUST00000157438 Gm24477 snRNA Interval_6079 chr1 96191385 96191638 + 0 NA Intergenic Intergenic 75430 ENSMUSG00000080345.3 ENSMUSG00000080345 ENSMUST00000116695 Gm24586 miRNA Interval_14035 chr10 25809266 25810424 + 0 NA intron (ENSMUSG00000112444.1, intron 1 of 4) lincRNA-intron (ENSMUSG00000112444.1, intron 1 of 4) -21289 ENSMUSG00000112491.1 ENSMUSG00000112491 ENSMUST00000218231 Gm19801 processed_pseudogene Interval_89509 chr2 21324662 21325009 + 0 NA Intergenic Intergenic -42732 ENSMUSG00000045967.11 ENSMUSG00000045967 ENSMUST00000155760 Gpr158 protein_coding Interval_115675 chr4 101950667 101951461 + 0 NA Intergenic Intergenic 10657 ENSMUSG00000070890.3 ENSMUSG00000070890 ENSMUST00000052027 Gm12794 protein_coding Interval_116691 chr4 116669075 116670090 + 0 NA Intergenic Intergenic -4571 ENSMUSG00000065185.1 ENSMUSG00000065185 ENSMUST00000083251 Gm25137 snRNA Interval_99406 chr2 160700145 160700852 + 0 NA intron (ENSMUSG00000070544.6, intron 9 of 20) protein_coding-intron (ENSMUSG00000070544.6, intron 9 of 20) 14829 ENSMUSG00000070544.6 ENSMUSG00000070544 ENSMUST00000150039 Top1 protein_coding Interval_127798 chr5 107906449 107906647 + 0 NA promoter-TSS (ENSMUSG00000077426.1) snoRNA-promoter-TSS (ENSMUSG00000077426.1) -797 ENSMUSG00000077426.1 ENSMUSG00000077426 ENSMUST00000104238 Gm26387 snoRNA Interval_35354 chr12 20963124 20963813 + 0 NA Intergenic Intergenic -26991 ENSMUSG00000052632.16 ENSMUSG00000052632 ENSMUST00000050990 Asap2 protein_coding Interval_126451 chr5 88655491 88655823 + 0 NA Intergenic Intergenic 8966 ENSMUSG00000029291.11 ENSMUSG00000029291 ENSMUST00000199956 Rufy3 protein_coding Interval_70534 chr17 11667646 11668324 + 0 NA intron (ENSMUSG00000023826.16, intron 6 of 10) protein_coding-intron (ENSMUSG00000023826.16, intron 7 of 11) 64360 ENSMUSG00000104466.1 ENSMUSG00000104466 ENSMUST00000194203 Gm10513 TEC Interval_100378 chr2 168712967 168713222 + 0 NA promoter-TSS (ENSMUSG00000027546.15) protein_coding-promoter-TSS (ENSMUSG00000027546.15) 28870 ENSMUSG00000027546.15 ENSMUSG00000027546 ENSMUST00000156555 Atp9a protein_coding Interval_50799 chr14 19919934 19921278 + 0 NA intron (ENSMUSG00000043004.13, intron 1 of 2) protein_coding-intron (ENSMUSG00000043004.13, intron 4 of 5) 53626 ENSMUSG00000114436.1 ENSMUSG00000114436 ENSMUST00000224546 Gm48283 lincRNA Interval_41571 chr12 116418665 116418910 + 0 NA TTS (ENSMUSG00000042029.7) protein_coding-TTS (ENSMUSG00000042029.7) -13577 ENSMUSG00000112980.1 ENSMUSG00000112980 ENSMUST00000220477 D430020J02Rik bidirectional_promoter_lncRNA Interval_75746 chr17 70979444 70980406 + 0 NA intron (ENSMUSG00000117098.1, intron 1 of 3) protein_coding-intron (ENSMUSG00000034868.9, intron 1 of 3) -1393 ENSMUSG00000034868.9 ENSMUSG00000034868 ENSMUST00000131820 Myl12b protein_coding Interval_169094 chr9 92270941 92271303 + 0 NA intron (ENSMUSG00000032369.13, intron 3 of 3) protein_coding-intron (ENSMUSG00000032369.13, intron 8 of 8) -3761 ENSMUSG00000098766.1 ENSMUSG00000098766 ENSMUST00000183558 Mir6386 miRNA Interval_160557 chr8 110645680 110646449 + 0 NA intron (ENSMUSG00000010936.11, intron 1 of 6) protein_coding-intron (ENSMUSG00000010936.11, intron 10 of 18) 484 ENSMUSG00000010936.11 ENSMUSG00000010936 ENSMUST00000213015 Vac14 protein_coding Interval_81009 chr18 52767441 52769021 + 0 NA promoter-TSS (ENSMUSG00000024534.15) protein_coding-promoter-TSS (ENSMUSG00000024534.15) -57079 ENSMUSG00000118407.1 ENSMUSG00000118407 ENSMUST00000238707 Gm50457 protein_coding Interval_66952 chr16 38757833 38759074 + 0 NA promoter-TSS (ENSMUSG00000022793.17) protein_coding-promoter-TSS (ENSMUSG00000022793.17) 54 ENSMUSG00000022793.17 ENSMUSG00000022793 ENSMUST00000161010 B4galt4 protein_coding Interval_148336 chr7 80582318 80584421 + 0 NA Intergenic Intergenic 20414 ENSMUSG00000108643.1 ENSMUSG00000108643 ENSMUST00000206056 Gm44931 TEC Interval_147742 chr7 73296679 73297242 + 0 NA Intergenic Intergenic -13570 ENSMUSG00000108530.1 ENSMUSG00000108530 ENSMUST00000205600 4930429H19Rik lincRNA Interval_93377 chr2 72503264 72503545 + 0 NA Intergenic Intergenic 27151 ENSMUSG00000055612.15 ENSMUSG00000055612 ENSMUST00000137880 Cdca7 protein_coding Interval_131030 chr5 134657142 134657357 + 0 NA exon (ENSMUSG00000029674.13, exon 16 of 16) protein_coding-exon (ENSMUSG00000029674.13, exon 16 of 16) 6956 ENSMUSG00000029674.13 ENSMUSG00000029674 ENSMUST00000132027 Limk1 protein_coding Interval_123719 chr5 34806126 34806816 + 0 NA promoter-TSS (ENSMUSG00000029104.15) protein_coding-promoter-TSS (ENSMUSG00000029104.15) 10683 ENSMUSG00000029104.15 ENSMUSG00000029104 ENSMUST00000124272 Htt protein_coding Interval_126029 chr5 76957783 76958718 + 0 NA intron (ENSMUSG00000029247.17, intron 2 of 5) protein_coding-intron (ENSMUSG00000029247.17, intron 2 of 8) -6678 ENSMUSG00000029246.14 ENSMUSG00000029246 ENSMUST00000031158 Ppat protein_coding Interval_15985 chr10 59933882 59934393 + 0 NA Intergenic Intergenic 17697 ENSMUSG00000020108.4 ENSMUSG00000020108 ENSMUST00000020308 Ddit4 protein_coding Interval_137263 chr6 70880896 70881432 + 0 NA intron (ENSMUSG00000031668.14, intron 2 of 10) protein_coding-intron (ENSMUSG00000031668.14, intron 4 of 16) 4638 ENSMUSG00000105776.1 ENSMUSG00000105776 ENSMUST00000199580 Gm43292 TEC Interval_70747 chr17 14143802 14144869 + 0 NA Intergenic Intergenic -18038 ENSMUSG00000117280.1 ENSMUSG00000117280 ENSMUST00000233203 Gm49903 unprocessed_pseudogene Interval_97454 chr2 136712946 136714614 + 0 NA intron (ENSMUSG00000027273.13, intron 1 of 2) protein_coding-intron (ENSMUSG00000027273.13, intron 1 of 7) 326 ENSMUSG00000027273.13 ENSMUSG00000027273 ENSMUST00000110098 Snap25 protein_coding Interval_106805 chr3 100989413 100989631 + 0 NA Intergenic Intergenic -29527 ENSMUSG00000033222.16 ENSMUSG00000033222 ENSMUST00000200506 Ttf2 protein_coding Interval_96598 chr2 126204331 126204578 + 0 NA Intergenic Intergenic -10646 ENSMUSG00000090353.2 ENSMUSG00000090353 ENSMUST00000164042 Gm17555 protein_coding Interval_14286 chr10 30423812 30424533 + 0 NA Intergenic Intergenic 51254 ENSMUSG00000111047.1 ENSMUSG00000111047 ENSMUST00000213206 Gm4780 transcribed_processed_pseudogene Interval_138416 chr6 88008114 88008382 + 0 NA intron (ENSMUSG00000079477.9, intron 4 of 4) protein_coding-intron (ENSMUSG00000079477.9, intron 3 of 5) -14069 ENSMUSG00000108227.1 ENSMUSG00000108227 ENSMUST00000203702 4933412L11Rik TEC Interval_142589 chr6 143614612 143615867 + 0 NA intron (ENSMUSG00000086887.1, intron 3 of 4) lincRNA-intron (ENSMUSG00000086887.1, intron 3 of 4) 36049 ENSMUSG00000086887.1 ENSMUSG00000086887 ENSMUST00000150559 1700060C16Rik lincRNA Interval_153787 chr8 8600553 8601010 + 0 NA Intergenic Intergenic -11483 ENSMUSG00000109436.1 ENSMUSG00000109436 ENSMUST00000208426 Gm45075 lincRNA Interval_130371 chr5 126915906 126916599 + 0 NA Intergenic Intergenic 63495 ENSMUSG00000106644.1 ENSMUSG00000106644 ENSMUST00000198430 Gm40331 lincRNA Interval_115440 chr4 98948847 98950296 + 0 NA intron (ENSMUSG00000028556.15, intron 41 of 47) protein_coding-intron (ENSMUSG00000028556.15, intron 42 of 48) 25607 ENSMUSG00000028560.11 ENSMUSG00000028560 ENSMUST00000125104 Usp1 protein_coding Interval_6088 chr1 96669173 96669432 + 0 NA Intergenic Intergenic -6729 ENSMUSG00000100589.1 ENSMUSG00000100589 ENSMUST00000189056 4930533P14Rik lincRNA Interval_151277 chr7 120618980 120619196 + 0 NA intron (ENSMUSG00000109113.1, intron 4 of 6) lincRNA-intron (ENSMUSG00000109113.1, intron 1 of 5) -5161 ENSMUSG00000108911.1 ENSMUSG00000108911 ENSMUST00000207518 Gm45113 processed_pseudogene Interval_37380 chr12 66259884 66260644 + 0 NA Intergenic Intergenic -9001 ENSMUSG00000113531.1 ENSMUSG00000113531 ENSMUST00000222565 Gm2915 processed_pseudogene Interval_85606 chr19 29047400 29048460 + 0 NA promoter-TSS (ENSMUSG00000024782.7) protein_coding-promoter-TSS (ENSMUSG00000024782.7) 1685 ENSMUSG00000100075.1 ENSMUSG00000100075 ENSMUST00000187897 1700018L02Rik antisense Interval_56570 chr14 120398120 120398545 + 0 NA intron (ENSMUSG00000022139.17, intron 1 of 1) protein_coding-intron (ENSMUSG00000022139.17, intron 7 of 8) -9347 ENSMUSG00000097903.2 ENSMUSG00000097903 ENSMUST00000181685 Gm26679 antisense Interval_99179 chr2 157823657 157824384 + 0 NA intron (ENSMUSG00000027649.15, intron 8 of 8) protein_coding-intron (ENSMUSG00000027649.15, intron 10 of 15) 34156 ENSMUSG00000027649.15 ENSMUSG00000027649 ENSMUST00000156300 Ctnnbl1 protein_coding Interval_67737 chr16 56709899 56710268 + 0 NA intron (ENSMUSG00000022757.19, intron 2 of 2) protein_coding-intron (ENSMUSG00000022757.19, intron 2 of 7) 7099 ENSMUSG00000022757.19 ENSMUSG00000022757 ENSMUST00000141404 Tfg protein_coding Interval_69920 chr17 3206378 3207238 + 0 NA intron (ENSMUSG00000116858.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000116858.1, intron 1 of 2) -24463 ENSMUSG00000116858.1 ENSMUSG00000116858 ENSMUST00000232042 Gm49797 lincRNA Interval_152750 chr7 137184218 137184562 + 0 NA Intergenic Intergenic -14098 ENSMUSG00000109847.1 ENSMUSG00000109847 ENSMUST00000209650 Gm45278 antisense Interval_32858 chr11 112197617 112198207 + 0 NA Intergenic Intergenic 90474 ENSMUSG00000085324.1 ENSMUSG00000085324 ENSMUST00000146550 Gm11680 lincRNA Interval_67706 chr16 56100507 56100918 + 0 NA intron (ENSMUSG00000052917.15, intron 3 of 5) protein_coding-intron (ENSMUSG00000052917.15, intron 4 of 6) -3873 ENSMUSG00000116999.1 ENSMUSG00000116999 ENSMUST00000232486 Gm18723 processed_pseudogene Interval_33006 chr11 113630803 113631256 + 0 NA intron (ENSMUSG00000041654.15, intron 1 of 3) protein_coding-intron (ENSMUSG00000041654.15, intron 1 of 2) 11687 ENSMUSG00000047904.6 ENSMUSG00000047904 ENSMUST00000067591 Sstr2 protein_coding Interval_37719 chr12 71376469 71377640 + 0 NA intron (ENSMUSG00000113441.1, intron 2 of 5) lincRNA-intron (ENSMUSG00000113441.1, intron 2 of 5) 7154 ENSMUSG00000100668.1 ENSMUSG00000100668 ENSMUST00000190526 1700083H02Rik lincRNA Interval_47825 chr13 93558220 93559213 + 0 NA Intergenic Intergenic -58979 ENSMUSG00000021690.10 ENSMUSG00000021690 ENSMUST00000220513 Jmy protein_coding Interval_93972 chr2 80352551 80352999 + 0 NA intron (ENSMUSG00000027006.13, intron 22 of 22) protein_coding-intron (ENSMUSG00000027006.13, intron 22 of 22) 5121 ENSMUSG00000027006.13 ENSMUSG00000027006 ENSMUST00000154912 Dnajc10 protein_coding Interval_111613 chr4 24574238 24574610 + 0 NA exon (ENSMUSG00000045751.16, exon 13 of 23) protein_coding-exon (ENSMUSG00000045751.16, exon 13 of 23) 77973 ENSMUSG00000045751.16 ENSMUSG00000045751 ENSMUST00000123984 Mms22l protein_coding Interval_106604 chr3 97683715 97684535 + 0 NA Intergenic Intergenic 6437 ENSMUSG00000098381.1 ENSMUSG00000098381 ENSMUST00000184178 Mir7225 miRNA Interval_152593 chr7 134931620 134932687 + 0 NA intron (ENSMUSG00000073805.5, intron 1 of 3) protein_coding-intron (ENSMUSG00000058325.6, intron 27 of 51) 6125 ENSMUSG00000073805.5 ENSMUSG00000073805 ENSMUST00000210826 Insyn2a protein_coding Interval_104895 chr3 78695368 78695597 + 0 NA Intergenic Intergenic -63137 ENSMUSG00000102341.1 ENSMUSG00000102341 ENSMUST00000194471 Gm18952 processed_pseudogene Interval_33813 chr11 118701548 118701927 + 0 NA intron (ENSMUSG00000025576.17, intron 2 of 14) protein_coding-intron (ENSMUSG00000025576.17, intron 2 of 14) -89635 ENSMUSG00000085059.1 ENSMUSG00000085059 ENSMUST00000146016 Gm11750 lincRNA Interval_41823 chr12 119945107 119946920 + 0 NA promoter-TSS (ENSMUSG00000048004.15) protein_coding-promoter-TSS (ENSMUSG00000048004.15) 191 ENSMUSG00000048004.15 ENSMUSG00000048004 ENSMUST00000184069 Tmem196 protein_coding Interval_81393 chr18 60474771 60475510 + 0 NA exon (ENSMUSG00000038059.7, exon 2 of 2) protein_coding-exon (ENSMUSG00000038059.7, exon 2 of 2) 26436 ENSMUSG00000038059.7 ENSMUSG00000038059 ENSMUST00000237270 Smim3 protein_coding Interval_128941 chr5 116212527 116213706 + 0 NA intron (ENSMUSG00000043913.14, intron 2 of 5) protein_coding-intron (ENSMUSG00000043913.14, intron 2 of 13) -30590 ENSMUSG00000086122.1 ENSMUSG00000086122 ENSMUST00000156169 Gm14507 antisense Interval_84628 chr19 14525467 14525810 + 0 NA intron (ENSMUSG00000024642.17, intron 6 of 19) protein_coding-intron (ENSMUSG00000024642.17, intron 6 of 19) 69901 ENSMUSG00000024642.17 ENSMUSG00000024642 ENSMUST00000235975 Tle4 protein_coding Interval_28971 chr11 79652414 79653838 + 0 NA intron (ENSMUSG00000017639.13, intron 3 of 14) protein_coding-intron (ENSMUSG00000017639.13, intron 3 of 14) -7436 ENSMUSG00000017639.13 ENSMUSG00000017639 ENSMUST00000155381 Rab11fip4 protein_coding Interval_173605 chrX 100774354 100774920 + 0 NA promoter-TSS (ENSMUSG00000000881.12) protein_coding-promoter-TSS (ENSMUSG00000000881.12) -2648 ENSMUSG00000000881.12 ENSMUSG00000000881 ENSMUST00000146772 Dlg3 protein_coding Interval_46948 chr13 73652416 73653488 + 0 NA Intergenic Intergenic 4767 ENSMUSG00000021611.9 ENSMUSG00000021611 ENSMUST00000223325 Tert protein_coding Interval_29036 chr11 80016288 80016820 + 0 NA intron (ENSMUSG00000017548.15, intron 7 of 14) protein_coding-intron (ENSMUSG00000017548.15, intron 8 of 15) 23448 ENSMUSG00000017548.15 ENSMUSG00000017548 ENSMUST00000144188 Suz12 protein_coding Interval_104517 chr3 67241792 67242903 + 0 NA intron (ENSMUSG00000034544.17, intron 6 of 8) protein_coding-intron (ENSMUSG00000034544.17, intron 5 of 8) -131778 ENSMUSG00000048416.15 ENSMUSG00000048416 ENSMUST00000061322 Mlf1 protein_coding Interval_131196 chr5 135736757 135738973 + 0 NA promoter-TSS (ENSMUSG00000039886.8) protein_coding-promoter-TSS (ENSMUSG00000039886.8) -629 ENSMUSG00000039886.8 ENSMUSG00000039886 ENSMUST00000153399 Tmem120a protein_coding Interval_13059 chr10 10874950 10875284 + 0 NA intron (ENSMUSG00000019828.13, intron 3 of 9) protein_coding-intron (ENSMUSG00000019828.13, intron 3 of 8) 124071 ENSMUSG00000112730.1 ENSMUSG00000112730 ENSMUST00000219096 4930567K20Rik antisense Interval_54133 chr14 65587802 65588356 + 0 NA intron (ENSMUSG00000022031.6, intron 2 of 14) protein_coding-intron (ENSMUSG00000022031.6, intron 2 of 14) 4973 ENSMUSG00000022031.6 ENSMUSG00000022031 ENSMUST00000224743 Elp3 protein_coding Interval_104028 chr3 57511945 57512721 + 0 NA intron (ENSMUSG00000027803.14, intron 2 of 6) protein_coding-intron (ENSMUSG00000027803.14, intron 2 of 6) -15899 ENSMUSG00000083538.1 ENSMUSG00000083538 ENSMUST00000120831 Gm16016 processed_pseudogene Interval_69325 chr16 92224091 92224634 + 0 NA Intergenic Intergenic -16874 ENSMUSG00000116878.1 ENSMUSG00000116878 ENSMUST00000231551 Gm29880 processed_transcript Interval_157848 chr8 74923948 74924153 + 0 NA Intergenic Intergenic 50510 ENSMUSG00000031621.9 ENSMUSG00000031621 ENSMUST00000174427 Isx protein_coding Interval_120343 chr4 148033179 148034670 + 0 NA intron (ENSMUSG00000029016.13, intron 2 of 22) protein_coding-intron (ENSMUSG00000029016.13, intron 2 of 22) 2370 ENSMUSG00000083473.1 ENSMUSG00000083473 ENSMUST00000119862 Gm13207 processed_pseudogene Interval_96571 chr2 125805884 125806295 + 0 NA Intergenic Intergenic -45775 ENSMUSG00000035093.16 ENSMUSG00000035093 ENSMUST00000136450 Secisbp2l protein_coding Interval_70528 chr17 11539289 11539542 + 0 NA intron (ENSMUSG00000023826.16, intron 5 of 10) protein_coding-intron (ENSMUSG00000023826.16, intron 6 of 6) 6383 ENSMUSG00000099618.1 ENSMUSG00000099618 ENSMUST00000185957 Gm28118 processed_pseudogene Interval_173399 chrX 88579695 88581184 + 0 NA Intergenic Intergenic -7379 ENSMUSG00000081892.2 ENSMUSG00000081892 ENSMUST00000118653 Gm8864 processed_pseudogene Interval_173933 chrX 113180752 113181486 + 0 NA intron (ENSMUSG00000025531.14, intron 1 of 12) protein_coding-intron (ENSMUSG00000025531.14, intron 1 of 14) 46201 ENSMUSG00000081831.1 ENSMUSG00000081831 ENSMUST00000121476 Gm7405 processed_pseudogene Interval_28902 chr11 79167882 79168178 + 0 NA Intergenic Intergenic -44766 ENSMUSG00000081000.1 ENSMUSG00000081000 ENSMUST00000121698 Gm11200 processed_pseudogene Interval_152894 chr7 139536558 139537428 + 0 NA intron (ENSMUSG00000025477.14, intron 2 of 6) protein_coding-intron (ENSMUSG00000025477.14, intron 8 of 15) 20334 ENSMUSG00000025477.14 ENSMUSG00000025477 ENSMUST00000152475 Inpp5a protein_coding Interval_67112 chr16 43312605 43313269 + 0 NA exon (ENSMUSG00000082570.1, exon 1 of 1) processed_pseudogene-exon (ENSMUSG00000082570.1, exon 1 of 1) 343 ENSMUSG00000082570.1 ENSMUSG00000082570 ENSMUST00000118889 Gm15711 processed_pseudogene Interval_150037 chr7 105269972 105270706 + 0 NA Intergenic Intergenic -2513 ENSMUSG00000073908.5 ENSMUSG00000073908 ENSMUST00000098154 Olfr687 transcribed_unprocessed_pseudogene Interval_23632 chr11 23979111 23980253 + 0 NA Intergenic Intergenic -34973 ENSMUSG00000104783.1 ENSMUSG00000104783 ENSMUST00000199670 Gm44381 miRNA Interval_19620 chr10 105849334 105849511 + 0 NA Intergenic Intergenic 7918 ENSMUSG00000019897.8 ENSMUSG00000019897 ENSMUST00000155406 Ccdc59 protein_coding Interval_109436 chr3 142368509 142369150 + 0 NA intron (ENSMUSG00000028273.15, intron 1 of 12) protein_coding-intron (ENSMUSG00000028273.15, intron 2 of 12) -64850 ENSMUSG00000028273.15 ENSMUSG00000028273 ENSMUST00000058626 Pdlim5 protein_coding Interval_163684 chr9 24301748 24302825 + 0 NA intron (ENSMUSG00000043659.11, intron 4 of 5) protein_coding-intron (ENSMUSG00000043659.11, intron 7 of 9) -2029 ENSMUSG00000085969.1 ENSMUSG00000085969 ENSMUST00000153522 Gm15600 antisense Interval_171595 chr9 119433690 119434351 + 0 NA TTS (ENSMUSG00000061393.14) protein_coding-TTS (ENSMUSG00000061393.14) 3674 ENSMUSG00000061393.14 ENSMUSG00000061393 ENSMUST00000213431 Acvr2b protein_coding Interval_20754 chr10 120749687 120749928 + 0 NA Intergenic Intergenic -1474 ENSMUSG00000112757.1 ENSMUSG00000112757 ENSMUST00000219611 Gm10743 TEC Interval_143392 chr7 6330329 6332461 + 0 NA promoter-TSS (ENSMUSG00000030443.16) protein_coding-promoter-TSS (ENSMUSG00000030443.16) -2132 ENSMUSG00000030443.16 ENSMUSG00000030443 ENSMUST00000127658 Zfp583 protein_coding Interval_39462 chr12 88021325 88021541 + 0 NA Intergenic Intergenic -2662 ENSMUSG00000096803.1 ENSMUSG00000096803 ENSMUST00000178301 Gm6803 protein_coding Interval_82375 chr18 73349086 73349927 + 0 NA Intergenic Intergenic 184044 ENSMUSG00000065922.1 ENSMUSG00000065922 ENSMUST00000083988 n-R5-8s1 rRNA Interval_121481 chr4 156070155 156071124 + 0 NA Intergenic Intergenic -10837 ENSMUSG00000086549.1 ENSMUSG00000086549 ENSMUST00000138361 Gm13648 processed_transcript Interval_167553 chr9 70420989 70422084 + 0 NA promoter-TSS (ENSMUSG00000032218.7) protein_coding-promoter-TSS (ENSMUSG00000032218.7) 11 ENSMUSG00000032218.7 ENSMUSG00000032218 ENSMUST00000034742 Ccnb2 protein_coding Interval_102236 chr3 19791048 19791259 + 0 NA Intergenic Intergenic 22280 ENSMUSG00000106182.1 ENSMUSG00000106182 ENSMUST00000197778 Gm7442 processed_pseudogene Interval_99649 chr2 163927143 163927386 + 0 NA Intergenic Intergenic -8581 ENSMUSG00000035226.5 ENSMUSG00000035226 ENSMUST00000044734 Rims4 protein_coding Interval_19909 chr10 111138013 111138575 + 0 NA Intergenic Intergenic -9085 ENSMUSG00000088553.1 ENSMUSG00000088553 ENSMUST00000157928 Gm22101 snRNA Interval_41160 chr12 111558857 111560298 + 0 NA promoter-TSS (ENSMUSG00000113462.1) processed_pseudogene-promoter-TSS (ENSMUSG00000113462.1) -567 ENSMUSG00000113462.1 ENSMUSG00000113462 ENSMUST00000220847 Gm48248 processed_pseudogene Interval_137223 chr6 70304907 70305436 + 0 NA Intergenic Intergenic -7052 ENSMUSG00000105668.1 ENSMUSG00000105668 ENSMUST00000199501 Igkv8-22 IG_V_pseudogene Interval_167018 chr9 64570409 64570963 + 0 NA intron (ENSMUSG00000036466.17, intron 1 of 1) protein_coding-intron (ENSMUSG00000036466.17, intron 5 of 24) 155034 ENSMUSG00000004771.12 ENSMUSG00000004771 ENSMUST00000165083 Rab11a protein_coding Interval_133244 chr5 150839719 150840944 + 0 NA intron (ENSMUSG00000106692.1, intron 1 of 3) lincRNA-intron (ENSMUSG00000106692.1, intron 1 of 3) 17472 ENSMUSG00000106692.1 ENSMUSG00000106692 ENSMUST00000201101 Gm36447 lincRNA Interval_98672 chr2 154171664 154172351 + 0 NA Intergenic Intergenic 9400 ENSMUSG00000027484.2 ENSMUSG00000027484 ENSMUST00000028986 Bpifa5 protein_coding Interval_164912 chr9 43040680 43040934 + 0 NA intron (ENSMUSG00000059495.14, intron 3 of 40) protein_coding-intron (ENSMUSG00000059495.14, intron 3 of 41) -14147 ENSMUSG00000059495.14 ENSMUSG00000059495 ENSMUST00000214175 Arhgef12 protein_coding Interval_112608 chr4 43533716 43535493 + 0 NA exon (ENSMUSG00000028465.16, exon 49 of 57) protein_coding-exon (ENSMUSG00000028465.16, exon 49 of 57) -10839 ENSMUSG00000028464.16 ENSMUSG00000028464 ENSMUST00000150592 Tpm2 protein_coding Interval_28574 chr11 76811069 76811305 + 0 NA intron (ENSMUSG00000020841.5, intron 6 of 20) protein_coding-intron (ENSMUSG00000020841.5, intron 6 of 20) -20165 ENSMUSG00000020841.5 ENSMUSG00000020841 ENSMUST00000132796 Cpd protein_coding Interval_164547 chr9 38423653 38424010 + 0 NA Intergenic Intergenic -5628 ENSMUSG00000052058.3 ENSMUSG00000052058 ENSMUST00000063716 Olfr901 protein_coding Interval_126707 chr5 92162776 92163202 + 0 NA intron (ENSMUSG00000029407.10, intron 4 of 21) protein_coding-intron (ENSMUSG00000029407.10, intron 4 of 23) -18400 ENSMUSG00000029407.10 ENSMUSG00000029407 ENSMUST00000202362 Uso1 protein_coding Interval_9729 chr1 161357827 161358172 + 0 NA Intergenic Intergenic -37410 ENSMUSG00000026700.4 ENSMUSG00000026700 ENSMUST00000028024 Tnfsf4 protein_coding Interval_9853 chr1 163163349 163164443 + 0 NA Intergenic Intergenic 45669 ENSMUSG00000089174.1 ENSMUSG00000089174 ENSMUST00000158549 Gm22434 snoRNA Interval_27815 chr11 70171644 70172553 + 0 NA Intergenic Intergenic 2788 ENSMUSG00000000318.16 ENSMUSG00000000318 ENSMUST00000153959 Clec10a protein_coding Interval_166115 chr9 56824967 56826036 + 0 NA Intergenic Intergenic -24240 ENSMUSG00000111037.1 ENSMUSG00000111037 ENSMUST00000215507 Gm47235 lincRNA Interval_15504 chr10 49907847 49909703 + 0 NA Intergenic Intergenic 47206 ENSMUSG00000110973.1 ENSMUSG00000110973 ENSMUST00000213795 Gm48130 processed_pseudogene Interval_171081 chr9 114440231 114441250 + 0 NA intron (ENSMUSG00000045594.10, intron 8 of 14) protein_coding-intron (ENSMUSG00000045594.10, intron 9 of 15) 39632 ENSMUSG00000045594.10 ENSMUSG00000045594 ENSMUST00000217583 Glb1 protein_coding Interval_79626 chr18 34069148 34069411 + 0 NA Intergenic Intergenic -16245 ENSMUSG00000117961.1 ENSMUSG00000117961 ENSMUST00000235466 Gm50265 lincRNA Interval_9789 chr1 162354817 162355047 + 0 NA intron (ENSMUSG00000040265.16, intron 3 of 5) protein_coding-intron (ENSMUSG00000040265.16, intron 3 of 19) 38840 ENSMUSG00000089933.1 ENSMUSG00000089933 ENSMUST00000160695 Gm16101 processed_pseudogene Interval_65080 chr16 18904901 18905121 + 0 NA intron (ENSMUSG00000099908.1, intron 6 of 23) protein_coding-intron (ENSMUSG00000022702.16, intron 5 of 24) -28402 ENSMUSG00000022706.16 ENSMUSG00000022706 ENSMUST00000232123 Mrpl40 protein_coding Interval_38085 chr12 75572252 75572709 + 0 NA intron (ENSMUSG00000021051.10, intron 2 of 12) protein_coding-intron (ENSMUSG00000021051.10, intron 2 of 13) -7385 ENSMUSG00000112459.1 ENSMUSG00000112459 ENSMUST00000219909 Gm47689 antisense Interval_59301 chr15 50931521 50931787 + 0 NA intron (ENSMUSG00000115339.1, intron 3 of 3) lincRNA-intron (ENSMUSG00000115339.1, intron 3 of 3) 34015 ENSMUSG00000115339.1 ENSMUSG00000115339 ENSMUST00000226611 Gm48913 lincRNA Interval_157939 chr8 76862970 76863203 + 0 NA promoter-TSS (ENSMUSG00000087321.1) processed_pseudogene-promoter-TSS (ENSMUSG00000087321.1) -38 ENSMUSG00000087321.1 ENSMUSG00000087321 ENSMUST00000139800 Gm5353 processed_pseudogene Interval_124350 chr5 44306729 44307623 + 0 NA Intergenic Intergenic -48529 ENSMUSG00000104541.1 ENSMUSG00000104541 ENSMUST00000198298 Gm43114 TEC Interval_628 chr1 9237171 9237744 + 0 NA intron (ENSMUSG00000025909.16, intron 1 of 20) protein_coding-intron (ENSMUSG00000025909.16, intron 2 of 4) 21677 ENSMUSG00000103819.1 ENSMUSG00000103819 ENSMUST00000195333 Gm38008 processed_pseudogene Interval_42540 chr13 14950653 14951301 + 0 NA Intergenic Intergenic 7833 ENSMUSG00000114176.1 ENSMUSG00000114176 ENSMUST00000221755 Gm48329 processed_pseudogene Interval_82199 chr18 68923860 68924671 + 0 NA intron (ENSMUSG00000024546.6, intron 3 of 6) lincRNA-intron (ENSMUSG00000024546.6, intron 3 of 6) 27263 ENSMUSG00000024546.6 ENSMUSG00000024546 ENSMUST00000025428 4930546C10Rik lincRNA Interval_60722 chr15 76360732 76361572 + 0 NA exon (ENSMUSG00000109179.2, exon 19 of 24) protein_coding-exon (ENSMUSG00000109179.2, exon 19 of 24) 6720 ENSMUSG00000109179.2 ENSMUSG00000109179 ENSMUST00000208833 Gm35339 protein_coding Interval_130636 chr5 129363083 129363649 + 0 NA promoter-TSS (ENSMUSG00000104681.1) lincRNA-promoter-TSS (ENSMUSG00000104681.1) -754 ENSMUSG00000104681.1 ENSMUSG00000104681 ENSMUST00000199076 Gm43001 lincRNA Interval_165417 chr9 47648999 47649186 + 0 NA intron (ENSMUSG00000032076.20, intron 1 of 8) protein_coding-intron (ENSMUSG00000032076.20, intron 1 of 8) 118740 ENSMUSG00000032076.20 ENSMUSG00000032076 ENSMUST00000034581 Cadm1 protein_coding Interval_141606 chr6 131025306 131025510 + 0 NA Intergenic Intergenic -22861 ENSMUSG00000107582.2 ENSMUSG00000107582 ENSMUST00000203823 Gm44133 transcribed_unprocessed_pseudogene Interval_66209 chr16 32342264 32342457 + 0 NA intron (ENSMUSG00000053774.9, intron 1 of 2) protein_coding-intron (ENSMUSG00000053774.9, intron 1 of 10) 10095 ENSMUSG00000053774.9 ENSMUSG00000053774 ENSMUST00000232137 Ubxn7 protein_coding Interval_18744 chr10 89849303 89850167 + 0 NA Intergenic Intergenic -23774 ENSMUSG00000058589.14 ENSMUSG00000058589 ENSMUST00000183024 Anks1b protein_coding Interval_84490 chr19 11813716 11814293 + 0 NA intron (ENSMUSG00000041488.16, intron 1 of 10) protein_coding-intron (ENSMUSG00000041488.16, intron 1 of 11) 4889 ENSMUSG00000041488.16 ENSMUSG00000041488 ENSMUST00000209304 Stx3 protein_coding Interval_133947 chr6 16312947 16313149 + 0 NA Intergenic Intergenic 75421 ENSMUSG00000108089.1 ENSMUSG00000108089 ENSMUST00000203594 Gm3148 processed_pseudogene Interval_52814 chr14 50836965 50837701 + 0 NA promoter-TSS (ENSMUSG00000006281.8) protein_coding-promoter-TSS (ENSMUSG00000006281.8) -7262 ENSMUSG00000006281.8 ENSMUSG00000006281 ENSMUST00000226789 Tep1 protein_coding Interval_24453 chr11 33394957 33395300 + 0 NA exon (ENSMUSG00000069913.3, exon 1 of 1) processed_pseudogene-exon (ENSMUSG00000069913.3, exon 1 of 1) 138 ENSMUSG00000069913.3 ENSMUSG00000069913 ENSMUST00000118265 Anp32-ps processed_pseudogene Interval_99459 chr2 161388826 161389326 + 0 NA Intergenic Intergenic 57762 ENSMUSG00000087031.1 ENSMUSG00000087031 ENSMUST00000151260 Gm14241 lincRNA Interval_147738 chr7 73238435 73238733 + 0 NA promoter-TSS (ENSMUSG00000108513.1) lincRNA-promoter-TSS (ENSMUSG00000108513.1) -53 ENSMUSG00000108513.1 ENSMUSG00000108513 ENSMUST00000205509 Gm30075 lincRNA Interval_56322 chr14 117347977 117348304 + 0 NA intron (ENSMUSG00000058571.11, intron 2 of 9) protein_coding-intron (ENSMUSG00000058571.11, intron 2 of 8) 422609 ENSMUSG00000058571.11 ENSMUSG00000058571 ENSMUST00000078849 Gpc6 protein_coding Interval_133725 chr6 9978955 9979161 + 0 NA Intergenic Intergenic 193796 ENSMUSG00000107459.1 ENSMUSG00000107459 ENSMUST00000203122 Gm5110 processed_pseudogene Interval_35425 chr12 21528232 21529026 + 0 NA Intergenic Intergenic -14678 ENSMUSG00000109975.1 ENSMUSG00000109975 ENSMUST00000209258 Gm19196 transcribed_unprocessed_pseudogene Interval_13761 chr10 21881831 21882720 + 0 NA promoter-TSS (ENSMUSG00000019970.15) protein_coding-promoter-TSS (ENSMUSG00000019970.15) -3383 ENSMUSG00000080607.1 ENSMUSG00000080607 ENSMUST00000116957 Gm23839 snoRNA Interval_56436 chr14 118743046 118743942 + 0 NA Intergenic Intergenic -8349 ENSMUSG00000098630.1 ENSMUSG00000098630 ENSMUST00000184172 Gm27198 lincRNA Interval_101517 chr3 3507334 3508646 + 0 NA promoter-TSS (ENSMUSG00000017688.14) protein_coding-promoter-TSS (ENSMUSG00000017688.14) -38378 ENSMUSG00000102283.1 ENSMUSG00000102283 ENSMUST00000193058 Gm37000 unprocessed_pseudogene Interval_57288 chr15 8443357 8446544 + 0 NA promoter-TSS (ENSMUSG00000022141.7) protein_coding-promoter-TSS (ENSMUSG00000022141.7) -487 ENSMUSG00000022141.7 ENSMUSG00000022141 ENSMUST00000052965 Nipbl protein_coding Interval_22246 chr11 8045269 8045971 + 0 NA Intergenic Intergenic -40604 ENSMUSG00000089247.1 ENSMUSG00000089247 ENSMUST00000158622 Gm24051 snoRNA Interval_9702 chr1 161151229 161151669 + 0 NA intron (ENSMUSG00000044835.15, intron 2 of 4) protein_coding-intron (ENSMUSG00000044835.15, intron 2 of 5) 7865 ENSMUSG00000049160.15 ENSMUSG00000049160 ENSMUST00000178511 Tex50 protein_coding Interval_112839 chr4 45445403 45445697 + 0 NA intron (ENSMUSG00000044813.15, intron 3 of 4) protein_coding-intron (ENSMUSG00000044813.15, intron 4 of 5) -36904 ENSMUSG00000045973.18 ENSMUSG00000045973 ENSMUST00000134714 Slc25a51 protein_coding Interval_26395 chr11 57615585 57616671 + 0 NA Intergenic Intergenic -29337 ENSMUSG00000020520.14 ENSMUSG00000020520 ENSMUST00000108846 Galnt10 protein_coding Interval_129325 chr5 119099644 119100221 + 0 NA Intergenic Intergenic -8302 ENSMUSG00000100573.1 ENSMUSG00000100573 ENSMUST00000190550 1700081H04Rik lincRNA Interval_143238 chr7 4684403 4685575 + 0 NA promoter-TSS (ENSMUSG00000063802.5) protein_coding-promoter-TSS (ENSMUSG00000063802.5) -328 ENSMUSG00000063802.5 ENSMUSG00000063802 ENSMUST00000206306 Hspbp1 protein_coding Interval_78470 chr18 13138932 13139467 + 0 NA Intergenic Intergenic -7638 ENSMUSG00000117447.1 ENSMUSG00000117447 ENSMUST00000234509 Gm5240 processed_pseudogene Interval_146301 chr7 45215482 45217421 + 0 NA promoter-TSS (ENSMUSG00000030796.17) protein_coding-promoter-TSS (ENSMUSG00000030796.17) -1588 ENSMUSG00000030796.17 ENSMUSG00000030796 ENSMUST00000209222 Tead2 protein_coding Interval_39739 chr12 96138491 96139268 + 0 NA Intergenic Intergenic 90484 ENSMUSG00000112024.1 ENSMUSG00000112024 ENSMUST00000219586 Gm47394 unprocessed_pseudogene Interval_93001 chr2 69459346 69459610 + 0 NA exon (ENSMUSG00000027070.14, exon 56 of 79) protein_coding-exon (ENSMUSG00000027070.14, exon 56 of 79) 49667 ENSMUSG00000027070.14 ENSMUSG00000027070 ENSMUST00000092551 Lrp2 protein_coding Interval_121327 chr4 154999978 155000965 + 0 NA exon (ENSMUSG00000029055.17, exon 7 of 22) protein_coding-exon (ENSMUSG00000029055.17, exon 7 of 22) 30472 ENSMUSG00000029056.13 ENSMUSG00000029056 ENSMUST00000129386 Pank4 protein_coding Interval_142955 chr6 147290716 147291143 + 0 NA Intergenic Intergenic 19092 ENSMUSG00000081023.1 ENSMUSG00000081023 ENSMUST00000118025 Gm15766 processed_pseudogene Interval_10707 chr1 173389661 173390405 + 0 NA intron (ENSMUSG00000037860.15, intron 1 of 11) protein_coding-intron (ENSMUSG00000037860.15, intron 1 of 11) -22385 ENSMUSG00000005338.13 ENSMUSG00000005338 ENSMUST00000126963 Cadm3 protein_coding Interval_145381 chr7 34340758 34341082 + 0 NA Intergenic Intergenic 12575 ENSMUSG00000066568.12 ENSMUSG00000066568 ENSMUST00000206715 Lsm14a protein_coding Interval_100039 chr2 166694474 166694980 + 0 NA intron (ENSMUSG00000039621.13, intron 1 of 2) protein_coding-intron (ENSMUSG00000039621.13, intron 1 of 39) 8867 ENSMUSG00000039621.13 ENSMUSG00000039621 ENSMUST00000140624 Prex1 protein_coding Interval_60062 chr15 64352757 64353179 + 0 NA intron (ENSMUSG00000022377.16, intron 1 of 30) protein_coding-intron (ENSMUSG00000022377.16, intron 1 of 30) -23951 ENSMUSG00000115646.1 ENSMUSG00000115646 ENSMUST00000228336 Gm10926 TEC Interval_157868 chr8 75083462 75084304 + 0 NA Intergenic Intergenic 4742 ENSMUSG00000110429.1 ENSMUSG00000110429 ENSMUST00000212025 Gm2059 processed_pseudogene Interval_138676 chr6 91092054 91092437 + 0 NA intron (ENSMUSG00000030091.17, intron 1 of 3) protein_coding-intron (ENSMUSG00000030091.17, intron 3 of 39) 6377 ENSMUSG00000030091.17 ENSMUSG00000030091 ENSMUST00000203434 Nup210 protein_coding Interval_141298 chr6 127020749 127021180 + 0 NA intron (ENSMUSG00000000183.6, intron 2 of 2) protein_coding-intron (ENSMUSG00000000183.6, intron 2 of 2) 5378 ENSMUSG00000000183.6 ENSMUSG00000000183 ENSMUST00000000187 Fgf6 protein_coding Interval_62667 chr15 96130012 96131164 + 0 NA Intergenic Intergenic -75763 ENSMUSG00000078925.11 ENSMUSG00000078925 ENSMUST00000140253 D030018L15Rik lincRNA Interval_114708 chr4 84119158 84119814 + 0 NA Intergenic Intergenic 10803 ENSMUSG00000087378.1 ENSMUSG00000087378 ENSMUST00000150794 Gm12414 lincRNA Interval_57450 chr15 11035730 11038735 + 0 NA exon (ENSMUSG00000060735.4, exon 1 of 1) protein_coding-exon (ENSMUSG00000060735.4, exon 1 of 1) 759 ENSMUSG00000060735.4 ENSMUSG00000060735 ENSMUST00000058007 Rxfp3 protein_coding Interval_13649 chr10 20405592 20406267 + 0 NA intron (ENSMUSG00000019990.15, intron 13 of 13) protein_coding-intron (ENSMUSG00000019990.15, intron 12 of 12) -40492 ENSMUSG00000111351.1 ENSMUSG00000111351 ENSMUST00000213596 Gm48537 processed_pseudogene Interval_137578 chr6 73501261 73502204 + 0 NA Intergenic Intergenic 27506 ENSMUSG00000107639.1 ENSMUSG00000107639 ENSMUST00000204929 Gm4374 processed_pseudogene Interval_106499 chr3 96713475 96714090 + 0 NA intron (ENSMUSG00000028099.8, intron 13 of 14) protein_coding-intron (ENSMUSG00000028099.8, intron 13 of 14) -5235 ENSMUSG00000028100.11 ENSMUSG00000028100 ENSMUST00000029742 Nudt17 protein_coding Interval_33854 chr11 119028376 119029324 + 0 NA TTS (ENSMUSG00000025577.7) protein_coding-TTS (ENSMUSG00000025577.7) 5125 ENSMUSG00000025577.7 ENSMUSG00000025577 ENSMUST00000139746 Cbx2 protein_coding Interval_45232 chr13 53361473 53361795 + 0 NA intron (ENSMUSG00000021468.8, intron 5 of 14) protein_coding-intron (ENSMUSG00000021468.8, intron 5 of 14) 15731 ENSMUSG00000021468.8 ENSMUSG00000021468 ENSMUST00000221709 Sptlc1 protein_coding Interval_151952 chr7 127745248 127747799 + 0 NA promoter-TSS (ENSMUSG00000030811.14) protein_coding-promoter-TSS (ENSMUSG00000030811.14) -1751 ENSMUSG00000030811.14 ENSMUSG00000030811 ENSMUST00000206893 Fbxl19 protein_coding Interval_150694 chr7 113451263 113451456 + 0 NA Intergenic Intergenic -2440 ENSMUSG00000109779.1 ENSMUSG00000109779 ENSMUST00000209594 Gm18780 processed_pseudogene Interval_130633 chr5 129348177 129349224 + 0 NA Intergenic Intergenic -15420 ENSMUSG00000104681.1 ENSMUSG00000104681 ENSMUST00000199076 Gm43001 lincRNA Interval_76765 chr17 83896652 83896961 + 0 NA Intergenic Intergenic -21131 ENSMUSG00000117442.1 ENSMUSG00000117442 ENSMUST00000234364 1810073O08Rik lincRNA Interval_17914 chr10 80797601 80799209 + 0 NA promoter-TSS (ENSMUSG00000020211.15) protein_coding-promoter-TSS (ENSMUSG00000020211.15) -327 ENSMUSG00000020211.15 ENSMUSG00000020211 ENSMUST00000139461 Sf3a2 protein_coding Interval_7068 chr1 125369483 125369690 + 0 NA Intergenic Intergenic 65895 ENSMUSG00000026341.16 ENSMUSG00000026341 ENSMUST00000188827 Actr3 protein_coding Interval_68031 chr16 64302177 64302965 + 0 NA Intergenic Intergenic 299837 ENSMUSG00000068167.6 ENSMUSG00000068167 ENSMUST00000089279 Csnka2ip protein_coding Interval_56109 chr14 105858865 105861287 + 0 NA intron (ENSMUSG00000115796.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000115796.1, intron 1 of 2) 2425 ENSMUSG00000115796.1 ENSMUSG00000115796 ENSMUST00000226354 Gm48970 lincRNA Interval_57071 chr15 5552643 5553026 + 0 NA intron (ENSMUSG00000110018.2, intron 2 of 4) transcribed_processed_pseudogene-intron (ENSMUSG00000110018.2, intron 3 of 8) 56516 ENSMUSG00000110018.2 ENSMUSG00000110018 ENSMUST00000227355 5430437J10Rik transcribed_processed_pseudogene Interval_42723 chr13 18585795 18586066 + 0 NA Intergenic Intergenic 59419 ENSMUSG00000114118.1 ENSMUSG00000114118 ENSMUST00000221183 Gm48829 lincRNA Interval_75076 chr17 63044808 63045794 + 0 NA Intergenic Intergenic 51699 ENSMUSG00000089586.1 ENSMUSG00000089586 ENSMUST00000158961 Gm25348 rRNA Interval_10772 chr1 174550463 174551099 + 0 NA intron (ENSMUSG00000028354.13, intron 1 of 2) protein_coding-intron (ENSMUSG00000028354.13, intron 2 of 17) -59028 ENSMUSG00000028354.13 ENSMUSG00000028354 ENSMUST00000193905 Fmn2 protein_coding Interval_18580 chr10 88154747 88154966 + 0 NA intron (ENSMUSG00000035351.16, intron 3 of 9) protein_coding-intron (ENSMUSG00000035351.16, intron 3 of 9) 7829 ENSMUSG00000035351.16 ENSMUSG00000035351 ENSMUST00000219059 Nup37 protein_coding Interval_146711 chr7 49616091 49617378 + 0 NA Intergenic Intergenic 20115 ENSMUSG00000030507.6 ENSMUSG00000030507 ENSMUST00000032717 Dbx1 protein_coding Interval_100911 chr2 173300698 173301441 + 0 NA Intergenic Intergenic 24371 ENSMUSG00000087600.1 ENSMUSG00000087600 ENSMUST00000150185 Pmepa1os antisense Interval_39172 chr12 85598563 85600244 + 0 NA promoter-TSS (ENSMUSG00000034271.16) protein_coding-promoter-TSS (ENSMUSG00000034271.16) -212 ENSMUSG00000113165.1 ENSMUSG00000113165 ENSMUST00000223391 Gm47863 bidirectional_promoter_lncRNA Interval_20154 chr10 115301910 115302155 + 0 NA intron (ENSMUSG00000020132.10, intron 2 of 6) protein_coding-intron (ENSMUSG00000020132.10, intron 2 of 6) 13562 ENSMUSG00000020132.10 ENSMUSG00000020132 ENSMUST00000218831 Rab21 protein_coding Interval_146270 chr7 45076559 45077385 + 0 NA TTS (ENSMUSG00000003421.13) protein_coding-TTS (ENSMUSG00000003421.13) 11635 ENSMUSG00000019539.11 ENSMUSG00000019539 ENSMUST00000210355 Rcn3 protein_coding Interval_27910 chr11 70790121 70790836 + 0 NA TTS (ENSMUSG00000057135.12) protein_coding-TTS (ENSMUSG00000057135.12) 22108 ENSMUSG00000057135.12 ENSMUSG00000057135 ENSMUST00000074572 Scimp protein_coding Interval_136637 chr6 56866618 56869293 + 0 NA intron (ENSMUSG00000029781.7, intron 6 of 9) protein_coding-intron (ENSMUSG00000029781.7, intron 6 of 9) 18622 ENSMUSG00000029781.7 ENSMUSG00000029781 ENSMUST00000147159 Fkbp9 protein_coding Interval_91960 chr2 52042312 52042846 + 0 NA intron (ENSMUSG00000053475.5, intron 1 of 5) protein_coding-intron (ENSMUSG00000053475.5, intron 1 of 5) 4570 ENSMUSG00000053475.5 ENSMUSG00000053475 ENSMUST00000065927 Tnfaip6 protein_coding Interval_3149 chr1 54010639 54011548 + 0 NA intron (ENSMUSG00000042807.15, intron 2 of 3) protein_coding-intron (ENSMUSG00000042807.15, intron 2 of 28) -124152 ENSMUSG00000087949.1 ENSMUSG00000087949 ENSMUST00000157324 Gm24251 snRNA Interval_76767 chr17 83912267 83913108 + 0 NA Intergenic Intergenic -5250 ENSMUSG00000117442.1 ENSMUSG00000117442 ENSMUST00000234364 1810073O08Rik lincRNA Interval_116652 chr4 116364401 116364633 + 0 NA intron (ENSMUSG00000003810.13, intron 3 of 5) protein_coding-intron (ENSMUSG00000003810.13, intron 4 of 28) 7215 ENSMUSG00000003810.13 ENSMUSG00000003810 ENSMUST00000151347 Mast2 protein_coding Interval_15391 chr10 45354636 45355037 + 0 NA TTS (ENSMUSG00000071317.4) protein_coding-TTS (ENSMUSG00000071317.4) 1328 ENSMUSG00000071317.4 ENSMUSG00000071317 ENSMUST00000213557 Bves protein_coding Interval_14604 chr10 36923311 36924845 + 0 NA Intergenic Intergenic -67688 ENSMUSG00000019777.16 ENSMUSG00000019777 ENSMUST00000123010 Hdac2 protein_coding Interval_21081 chr10 125992508 125992973 + 0 NA intron (ENSMUSG00000020105.9, intron 1 of 1) protein_coding-intron (ENSMUSG00000020105.9, intron 3 of 18) 26506 ENSMUSG00000020105.9 ENSMUSG00000020105 ENSMUST00000219974 Lrig3 protein_coding Interval_52551 chr14 47430392 47430589 + 0 NA Intergenic Intergenic 8073 ENSMUSG00000115617.1 ENSMUSG00000115617 ENSMUST00000226648 Gm48975 lincRNA Interval_165810 chr9 53340602 53341427 + 0 NA promoter-TSS (ENSMUSG00000034584.3) protein_coding-promoter-TSS (ENSMUSG00000034584.3) -175 ENSMUSG00000034584.3 ENSMUSG00000034584 ENSMUST00000139096 Exph5 protein_coding Interval_152808 chr7 138029446 138029663 + 0 NA Intergenic Intergenic -32452 ENSMUSG00000109834.1 ENSMUSG00000109834 ENSMUST00000209641 Gm5650 processed_pseudogene Interval_115138 chr4 91354178 91354838 + 0 NA intron (ENSMUSG00000008489.18, intron 1 of 7) protein_coding-intron (ENSMUSG00000008489.18, intron 1 of 6) 2174 ENSMUSG00000008489.18 ENSMUSG00000008489 ENSMUST00000176151 Elavl2 protein_coding Interval_36680 chr12 51981835 51982423 + 0 NA Intergenic Intergenic -12907 ENSMUSG00000112064.1 ENSMUSG00000112064 ENSMUST00000218223 Gm47399 processed_pseudogene Interval_52698 chr14 48695497 48695723 + 0 NA TTS (ENSMUSG00000095299.1) snRNA-TTS (ENSMUSG00000095299.1) 371 ENSMUSG00000115194.1 ENSMUSG00000115194 ENSMUST00000226751 Gm48909 processed_pseudogene Interval_61169 chr15 79636474 79636767 + 0 NA exon (ENSMUSG00000042564.13, exon 9 of 9) protein_coding-exon (ENSMUSG00000042564.13, exon 9 of 9) 22304 ENSMUSG00000042564.13 ENSMUSG00000042564 ENSMUST00000231126 Fam227a protein_coding Interval_69708 chr16 95713054 95713304 + 0 NA TTS (ENSMUSG00000022895.16) protein_coding-TTS (ENSMUSG00000022895.16) 10724 ENSMUSG00000022895.16 ENSMUSG00000022895 ENSMUST00000233578 Ets2 protein_coding Interval_140172 chr6 114998412 114998628 + 0 NA Intergenic Intergenic 39335 ENSMUSG00000030316.13 ENSMUSG00000030316 ENSMUST00000144445 Tamm41 protein_coding Interval_118108 chr4 128997228 128997979 + 0 NA intron (ENSMUSG00000028792.14, intron 1 of 6) protein_coding-intron (ENSMUSG00000028792.14, intron 1 of 5) 4250 ENSMUSG00000028792.14 ENSMUSG00000028792 ENSMUST00000152762 Ak2 protein_coding Interval_160976 chr8 116617472 116617948 + 0 NA intron (ENSMUSG00000031758.10, intron 2 of 6) protein_coding-intron (ENSMUSG00000031758.10, intron 2 of 6) 112736 ENSMUSG00000034467.7 ENSMUSG00000034467 ENSMUST00000078170 Dynlrb2 protein_coding Interval_43093 chr13 23866134 23866577 + 0 NA Intergenic Intergenic -1395 ENSMUSG00000021335.13 ENSMUSG00000021335 ENSMUST00000006785 Slc17a1 protein_coding Interval_144834 chr7 28527811 28528829 + 0 NA intron (ENSMUSG00000109336.1, intron 1 of 12) protein_coding-intron (ENSMUSG00000109336.1, intron 1 of 12) 5484 ENSMUSG00000060747.3 ENSMUSG00000060747 ENSMUST00000078364 Ifnl3 protein_coding Interval_139170 chr6 96793708 96794178 + 0 NA Intergenic Intergenic -233079 ENSMUSG00000077598.1 ENSMUSG00000077598 ENSMUST00000104410 Gm26011 snRNA Interval_110786 chr4 8380691 8381605 + 0 NA Intergenic Intergenic 73099 ENSMUSG00000103127.1 ENSMUSG00000103127 ENSMUST00000194755 Gm37386 TEC Interval_26767 chr11 60334138 60334445 + 0 NA intron (ENSMUSG00000000538.18, intron 1 of 8) protein_coding-intron (ENSMUSG00000000538.18, intron 1 of 12) -8954 ENSMUSG00000082148.1 ENSMUSG00000082148 ENSMUST00000120311 Gm12266 processed_pseudogene Interval_97857 chr2 144466182 144466459 + 0 NA exon (ENSMUSG00000083674.3, exon 2 of 2) transcribed_unitary_pseudogene-exon (ENSMUSG00000083674.3, exon 2 of 2) 1925 ENSMUSG00000083674.3 ENSMUSG00000083674 ENSMUST00000137929 Zfp133-ps transcribed_unitary_pseudogene Interval_109967 chr3 152230978 152232392 + 0 NA TTS (ENSMUSG00000028034.15) protein_coding-TTS (ENSMUSG00000028034.15) 21118 ENSMUSG00000104621.1 ENSMUSG00000104621 ENSMUST00000197507 Gm43185 TEC Interval_26488 chr11 58120199 58120429 + 0 NA TTS (ENSMUSG00000037275.14) protein_coding-TTS (ENSMUSG00000037275.14) -5754 ENSMUSG00000087629.1 ENSMUSG00000087629 ENSMUST00000129126 Gm12246 antisense Interval_32506 chr11 107992083 107993304 + 0 NA intron (ENSMUSG00000050965.14, intron 1 of 5) protein_coding-intron (ENSMUSG00000050965.14, intron 8 of 16) -1329 ENSMUSG00000086078.1 ENSMUSG00000086078 ENSMUST00000137175 Gm11657 antisense Interval_146484 chr7 46279973 46281430 + 0 NA intron (ENSMUSG00000009487.10, intron 30 of 55) protein_coding-intron (ENSMUSG00000009487.10, intron 30 of 55) 39698 ENSMUSG00000009487.10 ENSMUSG00000009487 ENSMUST00000209802 Otog protein_coding Interval_33207 chr11 115224840 115225133 + 0 NA intron (ENSMUSG00000045980.13, intron 8 of 8) protein_coding-intron (ENSMUSG00000045980.13, intron 8 of 9) -28292 ENSMUSG00000089544.1 ENSMUSG00000089544 ENSMUST00000158919 Gm25837 miRNA Interval_11585 chr1 182986746 182987478 + 0 NA Intergenic Intergenic 10836 ENSMUSG00000104367.1 ENSMUSG00000104367 ENSMUST00000195603 Gm38079 lincRNA Interval_136815 chr6 60889425 60890234 + 0 NA Intergenic Intergenic -6866 ENSMUSG00000108262.1 ENSMUSG00000108262 ENSMUST00000203860 Gm43867 processed_pseudogene Interval_169331 chr9 96477971 96479556 + 0 NA promoter-TSS (ENSMUSG00000051234.6) protein_coding-promoter-TSS (ENSMUSG00000051234.6) -175 ENSMUSG00000051234.6 ENSMUSG00000051234 ENSMUST00000128955 Rnf7 protein_coding Interval_135937 chr6 48924116 48924944 + 0 NA Intergenic Intergenic -5365 ENSMUSG00000029813.8 ENSMUSG00000029813 ENSMUST00000031837 Doxl1 protein_coding Interval_147711 chr7 72391335 72391993 + 0 NA Intergenic Intergenic -162304 ENSMUSG00000032776.9 ENSMUSG00000032776 ENSMUST00000206755 Mctp2 protein_coding Interval_132361 chr5 144464034 144464321 + 0 NA Intergenic Intergenic 57575 ENSMUSG00000083574.1 ENSMUSG00000083574 ENSMUST00000118354 Gm15709 processed_pseudogene Interval_34146 chr11 120905330 120906023 + 0 NA intron (ENSMUSG00000048445.6, intron 3 of 18) protein_coding-intron (ENSMUSG00000048445.6, intron 3 of 18) -32005 ENSMUSG00000048445.6 ENSMUSG00000048445 ENSMUST00000143895 Ccdc57 protein_coding Interval_46437 chr13 65257185 65260779 + 0 NA promoter-TSS (ENSMUSG00000074847.2) protein_coding-promoter-TSS (ENSMUSG00000074847.2) -557 ENSMUSG00000074847.2 ENSMUSG00000074847 ENSMUST00000099425 Gm10775 protein_coding Interval_32804 chr11 110848558 110848868 + 0 NA Intergenic Intergenic -119320 ENSMUSG00000051497.15 ENSMUSG00000051497 ENSMUST00000178798 Kcnj16 protein_coding Interval_65215 chr16 20589409 20591828 + 0 NA promoter-TSS (ENSMUSG00000046613.19) protein_coding-promoter-TSS (ENSMUSG00000046613.19) 66 ENSMUSG00000116764.1 ENSMUSG00000116764 ENSMUST00000232229 Gm49748 antisense Interval_79562 chr18 33783993 33784638 + 0 NA Intergenic Intergenic -10624 ENSMUSG00000087590.2 ENSMUSG00000087590 ENSMUST00000179138 Epb41l4aos lincRNA Interval_167505 chr9 70111729 70112225 + 0 NA intron (ENSMUSG00000032224.15, intron 3 of 8) protein_coding-intron (ENSMUSG00000032224.15, intron 3 of 8) -8901 ENSMUSG00000032224.15 ENSMUSG00000032224 ENSMUST00000141775 Fam81a protein_coding Interval_40392 chr12 104597771 104598742 + 0 NA Intergenic Intergenic 78288 ENSMUSG00000112954.1 ENSMUSG00000112954 ENSMUST00000222329 Gm49732 lincRNA Interval_171395 chr9 117372488 117373647 + 0 NA intron (ENSMUSG00000039607.17, intron 1 of 14) protein_coding-intron (ENSMUSG00000039607.17, intron 1 of 14) -29912 ENSMUSG00000092504.1 ENSMUSG00000092504 ENSMUST00000173358 Gm20396 processed_pseudogene Interval_24170 chr11 30885082 30886321 + 0 NA intron (ENSMUSG00000020305.13, intron 1 of 9) protein_coding-intron (ENSMUSG00000043999.6, intron 1 of 1) 285 ENSMUSG00000020305.13 ENSMUSG00000020305 ENSMUST00000148808 Asb3 protein_coding Interval_89102 chr2 16381375 16382840 + 0 NA intron (ENSMUSG00000026748.13, intron 1 of 12) protein_coding-intron (ENSMUSG00000026748.13, intron 1 of 13) -256589 ENSMUSG00000026748.13 ENSMUSG00000026748 ENSMUST00000126173 Plxdc2 protein_coding Interval_94641 chr2 92936947 92937753 + 0 NA intron (ENSMUSG00000027220.2, intron 1 of 5) protein_coding-intron (ENSMUSG00000027220.2, intron 1 of 5) 22252 ENSMUSG00000027220.2 ENSMUSG00000027220 ENSMUST00000028648 Syt13 protein_coding Interval_156904 chr8 61572613 61575241 + 0 NA intron (ENSMUSG00000058056.16, intron 10 of 21) protein_coding-intron (ENSMUSG00000058056.16, intron 10 of 19) -58027 ENSMUSG00000058056.16 ENSMUSG00000058056 ENSMUST00000123523 Palld protein_coding Interval_12430 chr1 193386040 193386368 + 0 NA Intergenic Intergenic -15979 ENSMUSG00000016179.11 ENSMUSG00000016179 ENSMUST00000165718 Camk1g protein_coding Interval_3447 chr1 58414946 58416228 + 0 NA TTS (ENSMUSG00000026034.17) protein_coding-TTS (ENSMUSG00000026034.17) 4811 ENSMUSG00000026034.17 ENSMUSG00000026034 ENSMUST00000147258 Clk1 protein_coding Interval_165645 chr9 50639416 50639682 + 0 NA TTS (ENSMUSG00000000168.9) protein_coding-TTS (ENSMUSG00000000168.9) 10346 ENSMUSG00000000168.9 ENSMUSG00000000168 ENSMUST00000155417 Dlat protein_coding Interval_104342 chr3 63800448 63800826 + 0 NA intron (ENSMUSG00000036834.16, intron 2 of 22) protein_coding-intron (ENSMUSG00000036834.16, intron 1 of 21) -25157 ENSMUSG00000090131.1 ENSMUSG00000090131 ENSMUST00000162296 Gm16162 processed_pseudogene Interval_154438 chr8 17190020 17190846 + 0 NA intron (ENSMUSG00000060924.15, intron 2 of 10) protein_coding-intron (ENSMUSG00000060924.15, intron 2 of 69) -274251 ENSMUSG00000109625.1 ENSMUSG00000109625 ENSMUST00000210736 3110080E11Rik TEC Interval_18447 chr10 86071519 86071789 + 0 NA exon (ENSMUSG00000059602.14, exon 9 of 9) protein_coding-exon (ENSMUSG00000059602.14, exon 9 of 9) -24205 ENSMUSG00000112493.1 ENSMUSG00000112493 ENSMUST00000218077 4930486F22Rik antisense Interval_67919 chr16 59532698 59533763 + 0 NA intron (ENSMUSG00000022723.16, intron 12 of 21) protein_coding-intron (ENSMUSG00000022723.16, intron 9 of 18) -3039 ENSMUSG00000022723.16 ENSMUSG00000022723 ENSMUST00000139989 Crybg3 protein_coding Interval_6463 chr1 110460845 110461075 + 0 NA Intergenic Intergenic -14643 ENSMUSG00000100758.1 ENSMUSG00000100758 ENSMUST00000189337 Gm3332 processed_pseudogene Interval_164966 chr9 43489018 43489822 + 0 NA Intergenic Intergenic 19998 ENSMUSG00000100836.1 ENSMUSG00000100836 ENSMUST00000186146 Gm28215 lincRNA Interval_21076 chr10 125965687 125967326 + 0 NA exon (ENSMUSG00000020105.9, exon 1 of 19) protein_coding-exon (ENSMUSG00000020105.9, exon 1 of 19) 272 ENSMUSG00000020105.9 ENSMUSG00000020105 ENSMUST00000219974 Lrig3 protein_coding Interval_157597 chr8 71629036 71630350 + 0 NA exon (ENSMUSG00000034799.16, exon 44 of 44) protein_coding-exon (ENSMUSG00000034799.16, exon 44 of 44) 1413 ENSMUSG00000098976.1 ENSMUSG00000098976 ENSMUST00000184793 Mir6769b miRNA Interval_110398 chr3 157741556 157742233 + 0 NA Intergenic Intergenic -15486 ENSMUSG00000106632.1 ENSMUSG00000106632 ENSMUST00000199819 Gm33466 lincRNA Interval_17984 chr10 81239673 81241130 + 0 NA exon (ENSMUSG00000034949.18, exon 4 of 4) protein_coding-exon (ENSMUSG00000034949.18, exon 4 of 4) -8650 ENSMUSG00000034949.18 ENSMUSG00000034949 ENSMUST00000148029 Zfr2 protein_coding Interval_112428 chr4 41195302 41195592 + 0 NA exon (ENSMUSG00000028433.14, exon 28 of 29) protein_coding-exon (ENSMUSG00000028433.14, exon 28 of 29) 4630 ENSMUSG00000028433.14 ENSMUSG00000028433 ENSMUST00000140662 Ubap2 protein_coding Interval_107553 chr3 108458513 108459606 + 0 NA intron (ENSMUSG00000040412.17, intron 20 of 20) protein_coding-intron (ENSMUSG00000040412.17, intron 20 of 20) -7411 ENSMUSG00000106101.1 ENSMUSG00000106101 ENSMUST00000198133 Gm43438 processed_pseudogene Interval_91407 chr2 38605763 38606364 + 0 NA intron (ENSMUSG00000026750.6, intron 6 of 7) protein_coding-intron (ENSMUSG00000026750.6, intron 6 of 7) -16738 ENSMUSG00000082931.1 ENSMUSG00000082931 ENSMUST00000121784 Gm13586 processed_pseudogene Interval_56166 chr14 109473115 109473370 + 0 NA Intergenic Intergenic -49857 ENSMUSG00000115642.1 ENSMUSG00000115642 ENSMUST00000227701 Gm18977 processed_pseudogene Interval_47724 chr13 91807082 91808374 + 0 NA promoter-TSS (ENSMUSG00000021621.15) protein_coding-promoter-TSS (ENSMUSG00000021621.15) -6733 ENSMUSG00000021621.15 ENSMUSG00000021621 ENSMUST00000179368 Zcchc9 protein_coding Interval_26280 chr11 55659218 55659526 + 0 NA Intergenic Intergenic -51639 ENSMUSG00000000263.15 ENSMUSG00000000263 ENSMUST00000102716 Glra1 protein_coding Interval_29864 chr11 87403999 87405390 + 0 NA promoter-TSS (ENSMUSG00000010342.16) protein_coding-promoter-TSS (ENSMUSG00000010342.16) -188 ENSMUSG00000007646.13 ENSMUSG00000007646 ENSMUST00000129400 Rad51c protein_coding Interval_172515 chrX 23095940 23096545 + 0 NA Intergenic Intergenic 234306 ENSMUSG00000064659.1 ENSMUSG00000064659 ENSMUST00000082725 Gm26131 snRNA Interval_83257 chr18 83059882 83060237 + 0 NA intron (ENSMUSG00000118094.1, intron 4 of 6) processed_transcript-intron (ENSMUSG00000118094.1, intron 4 of 6) -38904 ENSMUSG00000117976.1 ENSMUSG00000117976 ENSMUST00000238101 Gm50437 lincRNA Interval_61753 chr15 83844098 83844312 + 0 NA intron (ENSMUSG00000041708.12, intron 2 of 4) protein_coding-intron (ENSMUSG00000041708.12, intron 4 of 6) 52191 ENSMUSG00000041708.12 ENSMUSG00000041708 ENSMUST00000148868 Mpped1 protein_coding Interval_134425 chr6 28557644 28558075 + 0 NA intron (ENSMUSG00000001424.14, intron 10 of 16) protein_coding-intron (ENSMUSG00000001424.14, intron 10 of 23) -5631 ENSMUSG00000104325.1 ENSMUSG00000104325 ENSMUST00000195742 Gm37321 TEC Interval_66966 chr16 38858263 38858693 + 0 NA intron (ENSMUSG00000086175.2, intron 5 of 5) antisense-intron (ENSMUSG00000086175.2, intron 5 of 5) 29572 ENSMUSG00000086175.2 ENSMUSG00000086175 ENSMUST00000148657 Gm15802 antisense Interval_141499 chr6 128653163 128653449 + 0 NA intron (ENSMUSG00000030363.8, intron 5 of 5) unprocessed_pseudogene-intron (ENSMUSG00000030363.8, intron 5 of 5) -4241 ENSMUSG00000107831.1 ENSMUSG00000107831 ENSMUST00000203669 Gm44420 processed_pseudogene Interval_130006 chr5 123675954 123676675 + 0 NA intron (ENSMUSG00000049550.17, intron 1 of 23) protein_coding-intron (ENSMUSG00000049550.17, intron 1 of 25) 7154 ENSMUSG00000104877.1 ENSMUSG00000104877 ENSMUST00000199851 Gm42651 TEC Interval_111420 chr4 21470151 21470389 + 0 NA Intergenic Intergenic 141750 ENSMUSG00000089322.1 ENSMUSG00000089322 ENSMUST00000158697 Gm25977 snoRNA Interval_166041 chr9 55918573 55919150 + 0 NA intron (ENSMUSG00000034007.10, intron 3 of 32) protein_coding-intron (ENSMUSG00000034007.10, intron 1 of 30) 19249 ENSMUSG00000034007.10 ENSMUSG00000034007 ENSMUST00000215323 Scaper protein_coding Interval_150106 chr7 106603366 106603769 + 0 NA exon (ENSMUSG00000073902.5, exon 1 of 1) unprocessed_pseudogene-exon (ENSMUSG00000073902.5, exon 1 of 1) 468 ENSMUSG00000073902.5 ENSMUSG00000073902 ENSMUST00000184540 Gm1966 unprocessed_pseudogene Interval_99657 chr2 164007009 164008057 + 0 NA intron (ENSMUSG00000018326.9, intron 1 of 3) protein_coding-intron (ENSMUSG00000018326.9, intron 1 of 5) 12030 ENSMUSG00000018326.9 ENSMUSG00000018326 ENSMUST00000131288 Ywhab protein_coding Interval_70410 chr17 9895012 9896138 + 0 NA Intergenic Intergenic 31156 ENSMUSG00000117110.1 ENSMUSG00000117110 ENSMUST00000233332 Gm49808 lincRNA Interval_144848 chr7 28583599 28584354 + 0 NA intron (ENSMUSG00000030602.13, intron 1 of 3) protein_coding-intron (ENSMUSG00000109336.1, intron 1 of 12) 14110 ENSMUSG00000030602.13 ENSMUSG00000030602 ENSMUST00000150454 Pak4 protein_coding Interval_121504 chr4 156248769 156250566 + 0 NA TTS (ENSMUSG00000096351.2) protein_coding-TTS (ENSMUSG00000096351.2) -4834 ENSMUSG00000111895.1 ENSMUSG00000111895 ENSMUST00000217800 Gm47252 antisense Interval_137105 chr6 67440355 67440601 + 0 NA intron (ENSMUSG00000049093.9, intron 7 of 10) protein_coding-intron (ENSMUSG00000049093.9, intron 7 of 10) -22427 ENSMUSG00000107508.1 ENSMUSG00000107508 ENSMUST00000203114 Gm44083 processed_pseudogene Interval_95998 chr2 119051985 119052367 + 0 NA intron (ENSMUSG00000027326.13, intron 1 of 7) protein_coding-intron (ENSMUSG00000027326.13, intron 1 of 7) 5029 ENSMUSG00000027326.13 ENSMUSG00000027326 ENSMUST00000028802 Knl1 protein_coding Interval_61251 chr15 80227788 80228861 + 0 NA promoter-TSS (ENSMUSG00000115962.1) TEC-promoter-TSS (ENSMUSG00000115962.1) 90 ENSMUSG00000115962.1 ENSMUSG00000115962 ENSMUST00000231034 4930588D02Rik TEC Interval_108184 chr3 122274044 122274925 + 0 NA promoter-TSS (ENSMUSG00000039756.12) protein_coding-promoter-TSS (ENSMUSG00000039756.12) -2289 ENSMUSG00000039756.12 ENSMUSG00000039756 ENSMUST00000196338 Dnttip2 protein_coding Interval_166142 chr9 57012176 57013390 + 0 NA intron (ENSMUSG00000032290.7, intron 1 of 12) protein_coding-intron (ENSMUSG00000032290.7, intron 1 of 12) -9449 ENSMUSG00000032290.7 ENSMUSG00000032290 ENSMUST00000215707 Ptpn9 protein_coding Interval_108699 chr3 130441193 130441471 + 0 NA intron (ENSMUSG00000058897.18, intron 7 of 37) protein_coding-intron (ENSMUSG00000058897.18, intron 7 of 37) -98157 ENSMUSG00000105011.1 ENSMUSG00000105011 ENSMUST00000196743 Gm43210 TEC Interval_52936 chr14 52127073 52127305 + 0 NA intron (ENSMUSG00000057132.16, intron 7 of 21) protein_coding-intron (ENSMUSG00000057132.16, intron 7 of 24) -22418 ENSMUSG00000057132.16 ENSMUSG00000057132 ENSMUST00000181736 Rpgrip1 protein_coding Interval_39682 chr12 92144915 92145108 + 0 NA Intergenic Intergenic 16428 ENSMUSG00000113643.1 ENSMUSG00000113643 ENSMUST00000222953 Gm40598 processed_pseudogene Interval_158378 chr8 83184992 83185887 + 0 NA intron (ENSMUSG00000031709.15, intron 1 of 20) protein_coding-intron (ENSMUSG00000031709.15, intron 1 of 17) -19269 ENSMUSG00000074228.3 ENSMUSG00000074228 ENSMUST00000238241 Gm10645 TEC Interval_8731 chr1 150168055 150168417 + 0 NA Intergenic Intergenic -3288 ENSMUSG00000097754.1 ENSMUSG00000097754 ENSMUST00000181308 Ptgs2os2 lincRNA Interval_163257 chr9 20138665 20139316 + 0 NA TTS (ENSMUSG00000058491.8) protein_coding-TTS (ENSMUSG00000058491.8) 9981 ENSMUSG00000058491.8 ENSMUSG00000058491 ENSMUST00000213024 Olfr869 protein_coding Interval_127740 chr5 107250570 107251266 + 0 NA intron (ENSMUSG00000029287.14, intron 2 of 6) protein_coding-intron (ENSMUSG00000029287.14, intron 2 of 16) 5586 ENSMUSG00000106671.1 ENSMUSG00000106671 ENSMUST00000197184 Gm42900 TEC Interval_131054 chr5 134785938 134786224 + 0 NA intron (ENSMUSG00000107318.1, intron 2 of 4) antisense-intron (ENSMUSG00000107318.1, intron 2 of 4) 39039 ENSMUSG00000107318.1 ENSMUSG00000107318 ENSMUST00000200700 Gm30003 antisense Interval_7282 chr1 128410909 128411385 + 0 NA TTS (ENSMUSG00000026356.15) protein_coding-TTS (ENSMUSG00000026356.15) -31660 ENSMUSG00000026356.15 ENSMUSG00000026356 ENSMUST00000064309 Dars protein_coding Interval_100117 chr2 167165042 167166319 + 0 NA intron (ENSMUSG00000050556.9, intron 1 of 1) protein_coding-intron (ENSMUSG00000050556.9, intron 2 of 2) -23022 ENSMUSG00000085151.7 ENSMUSG00000085151 ENSMUST00000147446 1110018N20Rik processed_transcript Interval_154835 chr8 24122462 24123511 + 0 NA intron (ENSMUSG00000037492.16, intron 6 of 7) protein_coding-intron (ENSMUSG00000037492.16, intron 6 of 7) -50918 ENSMUSG00000053979.4 ENSMUSG00000053979 ENSMUST00000066740 A730045E13Rik lincRNA Interval_142991 chr6 148116815 148117081 + 0 NA intron (ENSMUSG00000030303.15, intron 1 of 12) protein_coding-intron (ENSMUSG00000030303.15, intron 1 of 11) -49075 ENSMUSG00000089948.1 ENSMUSG00000089948 ENSMUST00000162391 Far2os1 antisense Interval_104254 chr3 62192251 62192709 + 0 NA Intergenic Intergenic 69273 ENSMUSG00000103322.1 ENSMUSG00000103322 ENSMUST00000195726 Gm37404 TEC Interval_31463 chr11 100814233 100814938 + 0 NA intron (ENSMUSG00000020919.11, intron 1 of 5) protein_coding-intron (ENSMUSG00000020919.11, intron 1 of 18) 35953 ENSMUSG00000020919.11 ENSMUSG00000020919 ENSMUST00000126266 Stat5b protein_coding Interval_120536 chr4 149182336 149183853 + 0 NA intron (ENSMUSG00000063077.15, intron 46 of 49) protein_coding-intron (ENSMUSG00000063077.15, intron 43 of 46) -16323 ENSMUSG00000028961.15 ENSMUSG00000028961 ENSMUST00000143944 Pgd protein_coding Interval_56337 chr14 117831569 117831919 + 0 NA intron (ENSMUSG00000058571.11, intron 4 of 9) protein_coding-intron (ENSMUSG00000058571.11, intron 4 of 8) 122103 ENSMUSG00000098648.1 ENSMUSG00000098648 ENSMUST00000183564 Mir6239 miRNA Interval_128660 chr5 114570903 114572053 + 0 NA intron (ENSMUSG00000041930.7, intron 1 of 1) protein_coding-intron (ENSMUSG00000041930.7, intron 1 of 2) 3461 ENSMUSG00000041930.7 ENSMUSG00000041930 ENSMUST00000130983 Fam222a protein_coding Interval_37233 chr12 61763189 61763714 + 0 NA intron (ENSMUSG00000035653.16, intron 2 of 5) protein_coding-intron (ENSMUSG00000035653.16, intron 2 of 3) 10905 ENSMUSG00000113588.1 ENSMUSG00000113588 ENSMUST00000220943 Gm48328 TEC Interval_118661 chr4 133046062 133047375 + 0 NA intron (ENSMUSG00000037692.14, intron 1 of 5) protein_coding-intron (ENSMUSG00000037692.14, intron 1 of 5) 34880 ENSMUSG00000037692.14 ENSMUSG00000037692 ENSMUST00000148518 Ahdc1 protein_coding Interval_23368 chr11 21946086 21946498 + 0 NA Intergenic Intergenic -6848 ENSMUSG00000082874.4 ENSMUSG00000082874 ENSMUST00000120694 Rpl15-ps1 processed_pseudogene Interval_139836 chr6 110284814 110285119 + 0 NA Intergenic Intergenic -93088 ENSMUSG00000108247.1 ENSMUSG00000108247 ENSMUST00000204363 Gm19039 processed_pseudogene Interval_30190 chr11 90363614 90363920 + 0 NA intron (ENSMUSG00000003949.16, intron 1 of 1) protein_coding-intron (ENSMUSG00000003949.16, intron 2 of 3) 24206 ENSMUSG00000003949.16 ENSMUSG00000003949 ENSMUST00000145786 Hlf protein_coding Interval_96502 chr2 125125449 125125956 + 0 NA intron (ENSMUSG00000087056.1, intron 3 of 3) processed_transcript-intron (ENSMUSG00000087056.1, intron 3 of 3) -2076 ENSMUSG00000027201.16 ENSMUSG00000027201 ENSMUST00000149911 Myef2 protein_coding Interval_73537 chr17 39936633 39936921 + 0 NA Intergenic Intergenic -13743 ENSMUSG00000095886.2 ENSMUSG00000095886 ENSMUST00000178880 Esp38 protein_coding Interval_98111 chr2 148153943 148154150 + 0 NA Intergenic Intergenic 2896 ENSMUSG00000089458.1 ENSMUSG00000089458 ENSMUST00000158833 Gm24221 snoRNA Interval_134672 chr6 30272063 30273511 + 0 NA intron (ENSMUSG00000039159.16, intron 1 of 4) protein_coding-intron (ENSMUSG00000039159.16, intron 1 of 4) 31741 ENSMUSG00000039159.16 ENSMUSG00000039159 ENSMUST00000148744 Ube2h protein_coding Interval_85000 chr19 21144344 21145200 + 0 NA intron (ENSMUSG00000118086.1, intron 2 of 4) lincRNA-intron (ENSMUSG00000118086.1, intron 2 of 4) 26069 ENSMUSG00000118086.1 ENSMUSG00000118086 ENSMUST00000235897 AC106834.1 lincRNA Interval_107145 chr3 103887739 103888047 + 0 NA promoter-TSS (ENSMUSG00000027843.13) protein_coding-promoter-TSS (ENSMUSG00000027843.13) 1821 ENSMUSG00000027843.13 ENSMUSG00000027843 ENSMUST00000126548 Ptpn22 protein_coding Interval_153486 chr7 145154183 145154513 + 0 NA Intergenic Intergenic -8648 ENSMUSG00000108967.1 ENSMUSG00000108967 ENSMUST00000207878 Gm45181 lincRNA Interval_39398 chr12 87157540 87158209 + 0 NA TTS (ENSMUSG00000021033.11) protein_coding-TTS (ENSMUSG00000021033.11) -2388 ENSMUSG00000113918.1 ENSMUSG00000113918 ENSMUST00000221468 Gm6566 antisense Interval_488 chr1 6339458 6339675 + 0 NA Intergenic Intergenic -19652 ENSMUSG00000087247.3 ENSMUSG00000087247 ENSMUST00000133144 Alkal1 protein_coding Interval_12260 chr1 191189683 191190686 + 0 NA intron (ENSMUSG00000026628.13, intron 1 of 3) protein_coding-intron (ENSMUSG00000026628.13, intron 1 of 3) -6722 ENSMUSG00000088461.1 ENSMUSG00000088461 ENSMUST00000157836 Gm24748 misc_RNA Interval_10012 chr1 165025640 165026529 + 0 NA Intergenic Intergenic 1739 ENSMUSG00000080561.1 ENSMUSG00000080561 ENSMUST00000116911 Gm26042 miRNA Interval_157390 chr8 70083341 70084962 + 0 NA promoter-TSS (ENSMUSG00000007594.10) protein_coding-promoter-TSS (ENSMUSG00000007594.10) 7 ENSMUSG00000007594.10 ENSMUSG00000007594 ENSMUST00000213092 Hapln4 protein_coding Interval_18984 chr10 93572004 93572664 + 0 NA intron (ENSMUSG00000036168.15, intron 8 of 13) protein_coding-intron (ENSMUSG00000036168.15, intron 11 of 15) -17079 ENSMUSG00000097407.1 ENSMUSG00000097407 ENSMUST00000181835 4933408J17Rik lincRNA Interval_30026 chr11 88768164 88770349 + 0 NA Intergenic Intergenic -25887 ENSMUSG00000085646.1 ENSMUSG00000085646 ENSMUST00000134567 Gm11493 lincRNA Interval_60675 chr15 76090800 76092085 + 0 NA promoter-TSS (ENSMUSG00000075590.4) protein_coding-promoter-TSS (ENSMUSG00000075590.4) -914 ENSMUSG00000075590.4 ENSMUSG00000075590 ENSMUST00000228419 Nrbp2 protein_coding Interval_165119 chr9 44662374 44662565 + 0 NA Intergenic Intergenic 2247 ENSMUSG00000111326.1 ENSMUSG00000111326 ENSMUST00000213963 Gm3953 processed_pseudogene Interval_23508 chr11 23035943 23036126 + 0 NA Intergenic Intergenic 22647 ENSMUSG00000049811.17 ENSMUSG00000049811 ENSMUST00000151877 Fam161a protein_coding Interval_36762 chr12 53246409 53249024 + 0 NA promoter-TSS (ENSMUSG00000021010.9) protein_coding-promoter-TSS (ENSMUSG00000021010.9) -441 ENSMUSG00000021010.9 ENSMUSG00000021010 ENSMUST00000223057 Npas3 protein_coding Interval_97274 chr2 132846240 132847624 + 0 NA promoter-TSS (ENSMUSG00000027357.16) protein_coding-promoter-TSS (ENSMUSG00000027357.16) 324 ENSMUSG00000086575.1 ENSMUSG00000086575 ENSMUST00000135990 Gm14104 antisense Interval_17613 chr10 78203391 78203836 + 0 NA exon (ENSMUSG00000000374.8, exon 3 of 3) protein_coding-exon (ENSMUSG00000000374.8, exon 3 of 3) -4514 ENSMUSG00000000374.8 ENSMUSG00000000374 ENSMUST00000217980 Trappc10 protein_coding Interval_41865 chr13 3653358 3653945 + 0 NA exon (ENSMUSG00000033781.7, exon 6 of 6) protein_coding-exon (ENSMUSG00000033781.7, exon 6 of 6) 5114 ENSMUSG00000088475.1 ENSMUSG00000088475 ENSMUST00000157850 Gm23084 rRNA Interval_19094 chr10 94468667 94469134 + 0 NA intron (ENSMUSG00000020023.18, intron 2 of 2) protein_coding-intron (ENSMUSG00000020023.18, intron 2 of 2) 60009 ENSMUSG00000085409.1 ENSMUSG00000085409 ENSMUST00000155180 Gm16155 sense_intronic Interval_71401 chr17 23548479 23549220 + 0 NA Intergenic Intergenic -1950 ENSMUSG00000117322.1 ENSMUSG00000117322 ENSMUST00000233076 6330415G19Rik antisense Interval_138235 chr6 86505401 86508922 + 0 NA Intergenic Intergenic 8380 ENSMUSG00000100174.1 ENSMUSG00000100174 ENSMUST00000187779 Gm28719 TEC Interval_150824 chr7 115193212 115193705 + 0 NA Intergenic Intergenic 21185 ENSMUSG00000099211.1 ENSMUSG00000099211 ENSMUST00000183778 Gm27684 miRNA Interval_117543 chr4 124586598 124587442 + 0 NA intron (ENSMUSG00000098760.1, intron 1 of 1) antisense-intron (ENSMUSG00000098760.1, intron 1 of 1) 17830 ENSMUSG00000073759.6 ENSMUSG00000073759 ENSMUST00000133499 4933407E24Rik lincRNA Interval_46331 chr13 64020734 64021368 + 0 NA Intergenic Intergenic 68150 ENSMUSG00000033122.14 ENSMUSG00000033122 ENSMUST00000222810 Hsd17b3 protein_coding Interval_123216 chr5 30700663 30701803 + 0 NA Intergenic Intergenic 34235 ENSMUSG00000029177.9 ENSMUSG00000029177 ENSMUST00000134372 Cenpa protein_coding Interval_52430 chr14 46338826 46339469 + 0 NA Intergenic Intergenic -41980 ENSMUSG00000079261.2 ENSMUSG00000079261 ENSMUST00000147092 Gm15217 protein_coding Interval_114390 chr4 74698418 74698846 + 0 NA Intergenic Intergenic -9308 ENSMUSG00000083659.1 ENSMUSG00000083659 ENSMUST00000121086 Gm11258 processed_pseudogene Interval_85476 chr19 27124011 27124742 + 0 NA Intergenic Intergenic -21679 ENSMUSG00000118209.1 ENSMUSG00000118209 ENSMUST00000236708 Gm35438 lincRNA Interval_89242 chr2 18343557 18344246 + 0 NA intron (ENSMUSG00000026740.12, intron 1 of 11) protein_coding-intron (ENSMUSG00000026740.12, intron 1 of 10) -4912 ENSMUSG00000082520.2 ENSMUSG00000082520 ENSMUST00000118436 Gm13349 processed_pseudogene Interval_49268 chr13 109950102 109951160 + 0 NA intron (ENSMUSG00000021699.17, intron 15 of 15) protein_coding-intron (ENSMUSG00000021699.17, intron 14 of 14) 46822 ENSMUSG00000084651.1 ENSMUSG00000084651 ENSMUST00000122702 Mir1904 miRNA Interval_37777 chr12 71926165 71926775 + 0 NA intron (ENSMUSG00000034574.10, intron 3 of 25) protein_coding-intron (ENSMUSG00000034574.10, intron 3 of 25) -79179 ENSMUSG00000098224.1 ENSMUSG00000098224 ENSMUST00000183329 Gm7985 processed_pseudogene Interval_138448 chr6 88284310 88284533 + 0 NA intron (ENSMUSG00000033216.9, intron 4 of 4) protein_coding-intron (ENSMUSG00000033216.9, intron 5 of 6) -60782 ENSMUSG00000047046.8 ENSMUSG00000047046 ENSMUST00000156018 1700031F10Rik antisense Interval_33486 chr11 116834134 116834340 + 0 NA Intergenic Intergenic 5729 ENSMUSG00000098792.1 ENSMUSG00000098792 ENSMUST00000184052 Gm27401 misc_RNA Interval_123518 chr5 33121481 33122440 + 0 NA intron (ENSMUSG00000011034.6, intron 2 of 14) protein_coding-intron (ENSMUSG00000011034.6, intron 2 of 14) -4842 ENSMUSG00000081022.1 ENSMUSG00000081022 ENSMUST00000118706 Gm15936 processed_pseudogene Interval_86617 chr19 42072699 42072930 + 0 NA Intergenic Intergenic 6319 ENSMUSG00000049670.9 ENSMUSG00000049670 ENSMUST00000051772 Morn4 protein_coding Interval_79182 chr18 25491930 25492401 + 0 NA intron (ENSMUSG00000024268.16, intron 3 of 4) protein_coding-intron (ENSMUSG00000024268.16, intron 10 of 12) 9074 ENSMUSG00000024268.16 ENSMUSG00000024268 ENSMUST00000224143 Celf4 protein_coding Interval_155304 chr8 31111288 31113489 + 0 NA exon (ENSMUSG00000039328.11, exon 1 of 1) protein_coding-exon (ENSMUSG00000039328.11, exon 1 of 1) 558 ENSMUSG00000039328.11 ENSMUSG00000039328 ENSMUST00000209547 Rnf122 protein_coding Interval_4092 chr1 67994692 67994924 + 0 NA Intergenic Intergenic 21132 ENSMUSG00000096031.1 ENSMUSG00000096031 ENSMUST00000178954 Gm23189 miRNA Interval_81136 chr18 54757294 54757731 + 0 NA Intergenic Intergenic -8620 ENSMUSG00000118307.1 ENSMUSG00000118307 ENSMUST00000235369 Gm5821 processed_pseudogene Interval_18867 chr10 91528310 91528897 + 0 NA Intergenic Intergenic -80223 ENSMUSG00000111051.1 ENSMUSG00000111051 ENSMUST00000213414 Gm47084 processed_pseudogene Interval_2419 chr1 39178936 39179650 + 0 NA Intergenic Intergenic 7699 ENSMUSG00000098833.1 ENSMUSG00000098833 ENSMUST00000184059 Mir6349 miRNA Interval_98257 chr2 150557880 150559245 + 0 NA Intergenic Intergenic -11853 ENSMUSG00000068129.5 ENSMUSG00000068129 ENSMUST00000089200 Cst7 protein_coding Interval_154733 chr8 22917286 22918198 + 0 NA exon (ENSMUSG00000031540.14, exon 9 of 18) protein_coding-exon (ENSMUSG00000031540.14, exon 9 of 18) 40699 ENSMUSG00000109793.1 ENSMUSG00000109793 ENSMUST00000210691 Gm10043 processed_pseudogene Interval_19147 chr10 95112529 95113327 + 0 NA Intergenic Intergenic -3451 ENSMUSG00000112677.1 ENSMUSG00000112677 ENSMUST00000219913 Gm48868 TEC Interval_171356 chr9 116962280 116962916 + 0 NA intron (ENSMUSG00000039607.17, intron 5 of 15) protein_coding-intron (ENSMUSG00000039607.17, intron 3 of 12) -96560 ENSMUSG00000092184.1 ENSMUSG00000092184 ENSMUST00000172565 Gm18489 processed_pseudogene Interval_49004 chr13 106851196 106851608 + 0 NA promoter-TSS (ENSMUSG00000100833.1) antisense-promoter-TSS (ENSMUSG00000100833.1) -498 ENSMUSG00000100833.1 ENSMUSG00000100833 ENSMUST00000191363 Gm28988 antisense Interval_75300 chr17 65764932 65765211 + 0 NA intron (ENSMUSG00000056515.9, intron 1 of 2) protein_coding-intron (ENSMUSG00000056515.9, intron 1 of 6) 7569 ENSMUSG00000056515.9 ENSMUSG00000056515 ENSMUST00000233258 Rab31 protein_coding Interval_25075 chr11 43696028 43697102 + 0 NA intron (ENSMUSG00000044950.7, intron 1 of 1) protein_coding-intron (ENSMUSG00000044950.7, intron 1 of 1) 14017 ENSMUSG00000044950.7 ENSMUSG00000044950 ENSMUST00000130467 Pwwp2a protein_coding Interval_76350 chr17 79342172 79343723 + 0 NA intron (ENSMUSG00000036533.9, intron 1 of 1) protein_coding-intron (ENSMUSG00000036533.9, intron 1 of 1) 10060 ENSMUSG00000036533.9 ENSMUSG00000036533 ENSMUST00000233363 Cdc42ep3 protein_coding Interval_62934 chr15 98012707 98013124 + 0 NA Intergenic Intergenic -8424 ENSMUSG00000022483.17 ENSMUSG00000022483 ENSMUST00000230148 Col2a1 protein_coding Interval_59687 chr15 57970217 57970861 + 0 NA TTS (ENSMUSG00000022364.14) protein_coding-TTS (ENSMUSG00000022364.14) -31607 ENSMUSG00000051225.9 ENSMUSG00000051225 ENSMUST00000161231 Fam83a protein_coding Interval_134029 chr6 17839982 17841193 + 0 NA promoter-TSS (ENSMUSG00000029534.17) protein_coding-promoter-TSS (ENSMUSG00000029534.17) 31 ENSMUSG00000029534.17 ENSMUSG00000029534 ENSMUST00000127322 St7 protein_coding Interval_110099 chr3 153291363 153292011 + 0 NA intron (ENSMUSG00000052544.9, intron 3 of 4) protein_coding-intron (ENSMUSG00000052544.9, intron 2 of 2) 6962 ENSMUSG00000105023.1 ENSMUSG00000105023 ENSMUST00000197231 1700012D16Rik sense_intronic Interval_103610 chr3 51178085 51178409 + 0 NA Intergenic Intergenic -53670 ENSMUSG00000103313.1 ENSMUSG00000103313 ENSMUST00000195382 Gm38357 TEC Interval_87988 chr19 57603699 57603933 + 0 NA Intergenic Intergenic -7218 ENSMUSG00000054843.9 ENSMUSG00000054843 ENSMUST00000077282 Atrnl1 protein_coding Interval_84605 chr19 14311767 14311954 + 0 NA Intergenic Intergenic 283679 ENSMUSG00000024642.17 ENSMUSG00000024642 ENSMUST00000235975 Tle4 protein_coding Interval_107707 chr3 111488455 111488713 + 0 NA Intergenic Intergenic -165727 ENSMUSG00000106100.1 ENSMUSG00000106100 ENSMUST00000199881 Gm9314 processed_pseudogene Interval_39898 chr12 99444259 99445126 + 0 NA intron (ENSMUSG00000033713.12, intron 3 of 3) protein_coding-intron (ENSMUSG00000033713.12, intron 1 of 5) -67444 ENSMUSG00000113610.1 ENSMUSG00000113610 ENSMUST00000223488 Gm47132 TEC Interval_104925 chr3 79044879 79045572 + 0 NA Intergenic Intergenic 65303 ENSMUSG00000077487.1 ENSMUSG00000077487 ENSMUST00000104299 Gm23440 snoRNA Interval_21283 chr10 127657775 127658799 + 0 NA TTS (ENSMUSG00000002147.18) protein_coding-TTS (ENSMUSG00000002147.18) 1526 ENSMUSG00000002147.18 ENSMUSG00000002147 ENSMUST00000145470 Stat6 protein_coding Interval_29041 chr11 80024113 80024293 + 0 NA promoter-TSS (ENSMUSG00000017548.15) protein_coding-promoter-TSS (ENSMUSG00000017548.15) 31097 ENSMUSG00000017548.15 ENSMUSG00000017548 ENSMUST00000144188 Suz12 protein_coding Interval_122024 chr5 14167541 14168207 + 0 NA intron (ENSMUSG00000063531.7, intron 4 of 15) protein_coding-intron (ENSMUSG00000063531.7, intron 4 of 16) -62233 ENSMUSG00000063531.7 ENSMUSG00000063531 ENSMUST00000199698 Sema3e protein_coding Interval_133915 chr6 15489821 15490018 + 0 NA Intergenic Intergenic 84938 ENSMUSG00000093317.1 ENSMUSG00000093317 ENSMUST00000175576 Gm25470 miRNA Interval_171733 chr9 120575158 120577696 + 0 NA promoter-TSS (ENSMUSG00000052658.5) lincRNA-promoter-TSS (ENSMUSG00000052658.5) -904 ENSMUSG00000052658.5 ENSMUSG00000052658 ENSMUST00000064646 5830454E08Rik lincRNA Interval_164508 chr9 37544087 37546182 + 0 NA TTS (ENSMUSG00000001943.8) protein_coding-TTS (ENSMUSG00000001943.8) 1004 ENSMUSG00000053310.11 ENSMUSG00000053310 ENSMUST00000182070 Nrgn protein_coding Interval_63790 chr15 103429879 103430829 + 0 NA promoter-TSS (ENSMUSG00000022487.14) protein_coding-promoter-TSS (ENSMUSG00000022487.14) -5 ENSMUSG00000022487.14 ENSMUSG00000022487 ENSMUST00000129837 Gtsf1 protein_coding Interval_5998 chr1 93810074 93810818 + 0 NA intron (ENSMUSG00000026283.13, intron 2 of 7) protein_coding-intron (ENSMUSG00000026283.13, intron 2 of 7) -1775 ENSMUSG00000088961.1 ENSMUSG00000088961 ENSMUST00000158336 Gm22089 snRNA Interval_54202 chr14 66203204 66203709 + 0 NA intron (ENSMUSG00000059456.13, intron 1 of 29) protein_coding-intron (ENSMUSG00000059456.13, intron 2 of 30) 10096 ENSMUSG00000059456.13 ENSMUSG00000059456 ENSMUST00000127083 Ptk2b protein_coding Interval_113744 chr4 58025452 58025938 + 0 NA Intergenic Intergenic -16571 ENSMUSG00000038709.15 ENSMUSG00000038709 ENSMUST00000239406 Txndc8 protein_coding Interval_144825 chr7 28478548 28479762 + 0 NA intron (ENSMUSG00000109336.1, intron 1 of 12) protein_coding-intron (ENSMUSG00000109336.1, intron 1 of 12) -1303 ENSMUSG00000109201.1 ENSMUSG00000109201 ENSMUST00000208450 Gm6518 unprocessed_pseudogene Interval_159005 chr8 88664981 88665434 + 0 NA exon (ENSMUSG00000055994.15, exon 4 of 13) protein_coding-exon (ENSMUSG00000055994.15, exon 4 of 13) 17823 ENSMUSG00000055994.15 ENSMUSG00000055994 ENSMUST00000109634 Nod2 protein_coding Interval_166541 chr9 60756254 60757135 + 0 NA intron (ENSMUSG00000095956.2, intron 2 of 3) lincRNA-intron (ENSMUSG00000095956.2, intron 2 of 3) 13574 ENSMUSG00000095956.2 ENSMUSG00000095956 ENSMUST00000178191 1700036A12Rik lincRNA Interval_42868 chr13 20747417 20748712 + 0 NA promoter-TSS (ENSMUSG00000113168.1) processed_pseudogene-promoter-TSS (ENSMUSG00000113168.1) -434 ENSMUSG00000113168.1 ENSMUSG00000113168 ENSMUST00000222235 Gm7614 processed_pseudogene Interval_127378 chr5 103596134 103596412 + 0 NA intron (ENSMUSG00000034573.14, intron 47 of 47) protein_coding-intron (ENSMUSG00000034573.14, intron 47 of 47) -6314 ENSMUSG00000088474.1 ENSMUSG00000088474 ENSMUST00000157849 Gm23085 misc_RNA Interval_95201 chr2 104742381 104744148 + 0 NA promoter-TSS (ENSMUSG00000027173.7) protein_coding-promoter-TSS (ENSMUSG00000027173.7) -20109 ENSMUSG00000027173.7 ENSMUSG00000027173 ENSMUST00000144133 Depdc7 protein_coding Interval_141587 chr6 129746027 129746226 + 0 NA Intergenic Intergenic -5642 ENSMUSG00000043932.5 ENSMUSG00000043932 ENSMUST00000050385 Klri2 protein_coding Interval_109510 chr3 143271993 143272416 + 0 NA Intergenic Intergenic 28676 ENSMUSG00000105923.4 ENSMUSG00000105923 ENSMUST00000198056 A830019L24Rik lincRNA Interval_132217 chr5 143395744 143396249 + 0 NA exon (ENSMUSG00000105594.1, exon 1 of 1) TEC-exon (ENSMUSG00000105594.1, exon 1 of 1) 493 ENSMUSG00000105594.1 ENSMUSG00000105594 ENSMUST00000196584 Gm43398 TEC Interval_56083 chr14 105482872 105483738 + 0 NA Intergenic Intergenic -17631 ENSMUSG00000022116.7 ENSMUSG00000022116 ENSMUST00000188698 4930449E01Rik processed_transcript Interval_48757 chr13 102842378 102842914 + 0 NA intron (ENSMUSG00000034751.17, intron 4 of 27) protein_coding-intron (ENSMUSG00000034751.17, intron 3 of 27) 80211 ENSMUSG00000090329.1 ENSMUSG00000090329 ENSMUST00000170645 Gm17160 antisense Interval_82149 chr18 68051939 68052381 + 0 NA intron (ENSMUSG00000024544.9, intron 1 of 5) protein_coding-intron (ENSMUSG00000024544.9, intron 1 of 5) 66214 ENSMUSG00000117891.1 ENSMUSG00000117891 ENSMUST00000236198 Gm41764 antisense Interval_12185 chr1 190689282 190691098 + 0 NA Intergenic Intergenic 95864 ENSMUSG00000103963.1 ENSMUSG00000103963 ENSMUST00000191893 Gm30932 lincRNA Interval_85222 chr19 23955724 23957898 + 0 NA Intergenic Intergenic -15217 ENSMUSG00000118340.1 ENSMUSG00000118340 ENSMUST00000236338 Gm50301 antisense Interval_45980 chr13 59751106 59751576 + 0 NA Intergenic Intergenic -6424 ENSMUSG00000051054.4 ENSMUSG00000051054 ENSMUST00000178508 1700014D04Rik protein_coding Interval_19333 chr10 96958163 96958844 + 0 NA intron (ENSMUSG00000112488.1, intron 1 of 4) lincRNA-intron (ENSMUSG00000112488.1, intron 1 of 4) 368 ENSMUSG00000112488.1 ENSMUSG00000112488 ENSMUST00000219918 Gm33981 lincRNA Interval_48430 chr13 98957570 98959139 + 0 NA Intergenic Intergenic -12438 ENSMUSG00000114569.1 ENSMUSG00000114569 ENSMUST00000223733 Gm35215 lincRNA Interval_83693 chr19 3774075 3774605 + 0 NA intron (ENSMUSG00000045098.19, intron 3 of 13) protein_coding-intron (ENSMUSG00000045098.19, intron 1 of 8) 6194 ENSMUSG00000045098.19 ENSMUSG00000045098 ENSMUST00000176125 Kmt5b protein_coding Interval_7070 chr1 125382466 125383062 + 0 NA Intergenic Intergenic 52717 ENSMUSG00000026341.16 ENSMUSG00000026341 ENSMUST00000188827 Actr3 protein_coding Interval_98852 chr2 155589741 155591142 + 0 NA promoter-TSS (ENSMUSG00000085317.1) antisense-promoter-TSS (ENSMUSG00000085317.1) -1440 ENSMUSG00000085317.1 ENSMUSG00000085317 ENSMUST00000155884 Gssos2 antisense Interval_131854 chr5 140388714 140389848 + 0 NA promoter-TSS (ENSMUSG00000029560.12) protein_coding-promoter-TSS (ENSMUSG00000029560.12) -22171 ENSMUSG00000029560.12 ENSMUSG00000029560 ENSMUST00000196020 Snx8 protein_coding Interval_150860 chr7 115894171 115894581 + 0 NA intron (ENSMUSG00000051910.13, intron 2 of 11) protein_coding-intron (ENSMUSG00000051910.13, intron 2 of 16) -48225 ENSMUSG00000051910.13 ENSMUSG00000051910 ENSMUST00000206912 Sox6 protein_coding Interval_106776 chr3 100704024 100704834 + 0 NA Intergenic Intergenic 11723 ENSMUSG00000106227.1 ENSMUSG00000106227 ENSMUST00000198003 Gm43464 lincRNA Interval_155197 chr8 27387572 27387962 + 0 NA intron (ENSMUSG00000031492.13, intron 3 of 4) protein_coding-intron (ENSMUSG00000031492.13, intron 3 of 5) 18999 ENSMUSG00000031492.13 ENSMUSG00000031492 ENSMUST00000079463 Chrnb3 protein_coding Interval_138471 chr6 88482656 88483760 + 0 NA intron (ENSMUSG00000030079.15, intron 6 of 10) protein_coding-intron (ENSMUSG00000030079.15, intron 6 of 10) 17481 ENSMUSG00000030079.15 ENSMUSG00000030079 ENSMUST00000129035 Ruvbl1 protein_coding Interval_154570 chr8 20882448 20882981 + 0 NA exon (ENSMUSG00000093800.2, exon 1 of 1) processed_pseudogene-exon (ENSMUSG00000093800.2, exon 1 of 1) 5486 ENSMUSG00000093800.2 ENSMUSG00000093800 ENSMUST00000180355 Gm20796 processed_pseudogene Interval_113215 chr4 50286777 50287622 + 0 NA TTS (ENSMUSG00000095394.1) snoRNA-TTS (ENSMUSG00000095394.1) 453 ENSMUSG00000095394.1 ENSMUSG00000095394 ENSMUST00000104120 Gm25485 snoRNA Interval_89638 chr2 23708936 23709216 + 0 NA Intergenic Intergenic 28858 ENSMUSG00000083729.1 ENSMUSG00000083729 ENSMUST00000121498 Sh3d2c-ps1 processed_pseudogene Interval_61546 chr15 82264515 82265141 + 0 NA Intergenic Intergenic -3974 ENSMUSG00000022456.18 ENSMUSG00000022456 ENSMUST00000230507 Septin3 protein_coding Interval_975 chr1 13596645 13596995 + 0 NA Intergenic Intergenic -6945 ENSMUSG00000025935.10 ENSMUSG00000025935 ENSMUST00000188377 Tram1 protein_coding Interval_117245 chr4 120916368 120917171 + 0 NA Intergenic Intergenic 8236 ENSMUSG00000028629.9 ENSMUSG00000028629 ENSMUST00000156836 Exo5 protein_coding Interval_73134 chr17 34999905 35001838 + 0 NA promoter-TSS (ENSMUSG00000007029.16) protein_coding-promoter-TSS (ENSMUSG00000007029.16) -446 ENSMUSG00000007029.16 ENSMUSG00000007029 ENSMUST00000174084 Vars protein_coding Interval_170906 chr9 111916610 111917489 + 0 NA intron (ENSMUSG00000111054.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000111054.1, intron 1 of 1) 1617 ENSMUSG00000111054.1 ENSMUSG00000111054 ENSMUST00000215688 4930545L08Rik lincRNA Interval_54704 chr14 73483902 73484134 + 0 NA Intergenic Intergenic -9075 ENSMUSG00000115530.1 ENSMUSG00000115530 ENSMUST00000226353 Gm4266 processed_pseudogene Interval_156245 chr8 46502430 46502987 + 0 NA intron (ENSMUSG00000018796.13, intron 3 of 5) protein_coding-intron (ENSMUSG00000018796.13, intron 2 of 20) -29118 ENSMUSG00000109807.1 ENSMUSG00000109807 ENSMUST00000211328 Gm45244 TEC Interval_149595 chr7 99927068 99927660 + 0 NA intron (ENSMUSG00000058761.5, intron 4 of 5) protein_coding-intron (ENSMUSG00000058761.5, intron 4 of 5) -17698 ENSMUSG00000108823.1 ENSMUSG00000108823 ENSMUST00000208954 Gm18959 processed_pseudogene Interval_113260 chr4 52535751 52536188 + 0 NA Intergenic Intergenic -38725 ENSMUSG00000061619.3 ENSMUSG00000061619 ENSMUST00000114578 Vma21-ps processed_pseudogene Interval_66499 chr16 34373688 34374279 + 0 NA intron (ENSMUSG00000061751.16, intron 3 of 30) protein_coding-intron (ENSMUSG00000061751.16, intron 3 of 59) -277955 ENSMUSG00000061751.16 ENSMUSG00000061751 ENSMUST00000132569 Kalrn protein_coding Interval_52578 chr14 47636198 47636420 + 0 NA Intergenic Intergenic -27478 ENSMUSG00000021843.17 ENSMUSG00000021843 ENSMUST00000190857 Ktn1 protein_coding Interval_137560 chr6 73221362 73223023 + 0 NA promoter-TSS (ENSMUSG00000052861.13) protein_coding-promoter-TSS (ENSMUSG00000052861.13) -858 ENSMUSG00000107440.1 ENSMUSG00000107440 ENSMUST00000204604 Gm40377 TEC Interval_136763 chr6 59292380 59293240 + 0 NA Intergenic Intergenic 83940 ENSMUSG00000049232.3 ENSMUSG00000049232 ENSMUST00000062626 Tigd2 protein_coding Interval_172447 chrX 20414944 20415442 + 0 NA Intergenic Intergenic -10524 ENSMUSG00000037315.15 ENSMUSG00000037315 ENSMUST00000043693 Jade3 protein_coding Interval_19425 chr10 99161883 99162776 + 0 NA intron (ENSMUSG00000019952.15, intron 9 of 10) protein_coding-intron (ENSMUSG00000019952.15, intron 9 of 11) 22281 ENSMUSG00000089994.1 ENSMUSG00000089994 ENSMUST00000160182 Gm16239 antisense Interval_47614 chr13 90108247 90108656 + 0 NA exon (ENSMUSG00000012422.14, exon 4 of 4) protein_coding-exon (ENSMUSG00000012422.14, exon 4 of 4) 9470 ENSMUSG00000088308.1 ENSMUSG00000088308 ENSMUST00000157683 Gm24507 snoRNA Interval_16966 chr10 70174608 70175098 + 0 NA promoter-TSS (ENSMUSG00000048701.13) protein_coding-promoter-TSS (ENSMUSG00000048701.13) -158 ENSMUSG00000048701.13 ENSMUSG00000048701 ENSMUST00000135607 Ccdc6 protein_coding Interval_164802 chr9 42014960 42015187 + 0 NA intron (ENSMUSG00000049313.8, intron 24 of 47) protein_coding-intron (ENSMUSG00000049313.8, intron 24 of 47) -7542 ENSMUSG00000086360.1 ENSMUSG00000086360 ENSMUST00000143710 Gm16214 antisense Interval_27826 chr11 70239323 70240160 + 0 NA promoter-TSS (ENSMUSG00000093989.1) protein_coding-promoter-TSS (ENSMUSG00000093989.1) 62 ENSMUSG00000040904.10 ENSMUSG00000040904 ENSMUST00000176268 Gm21988 protein_coding Interval_135275 chr6 37980381 37981151 + 0 NA Intergenic Intergenic 37845 ENSMUSG00000029830.15 ENSMUSG00000029830 ENSMUST00000040486 Svopl protein_coding Interval_8079 chr1 135594436 135594928 + 0 NA intron (ENSMUSG00000054412.5, intron 2 of 5) antisense-intron (ENSMUSG00000054412.5, intron 2 of 5) 9909 ENSMUSG00000054412.5 ENSMUSG00000054412 ENSMUST00000067468 Gm4793 antisense Interval_59281 chr15 50726057 50726437 + 0 NA intron (ENSMUSG00000038679.16, intron 7 of 8) protein_coding-intron (ENSMUSG00000038679.16, intron 5 of 6) 162867 ENSMUSG00000084458.1 ENSMUSG00000084458 ENSMUST00000122509 Mir1907 miRNA Interval_77492 chr17 90222321 90222814 + 0 NA intron (ENSMUSG00000024109.18, intron 2 of 2) protein_coding-intron (ENSMUSG00000024109.18, intron 16 of 20) -39985 ENSMUSG00000092706.1 ENSMUSG00000092706 ENSMUST00000174965 Gm24510 miRNA Interval_1297 chr1 19289952 19290336 + 0 NA Intergenic Intergenic 30553 ENSMUSG00000101117.1 ENSMUSG00000101117 ENSMUST00000190883 Gm28341 processed_pseudogene Interval_166449 chr9 59577747 59578825 + 0 NA promoter-TSS (ENSMUSG00000032297.11) protein_coding-promoter-TSS (ENSMUSG00000032297.11) -24372 ENSMUSG00000032297.11 ENSMUSG00000032297 ENSMUST00000129728 Celf6 protein_coding Interval_76495 chr17 80584536 80584821 + 0 NA intron (ENSMUSG00000024242.15, intron 17 of 18) protein_coding-intron (ENSMUSG00000024242.15, intron 32 of 33) -6865 ENSMUSG00000033966.8 ENSMUSG00000033966 ENSMUST00000234349 Cdkl4 protein_coding Interval_8859 chr1 151607484 151608264 + 0 NA intron (ENSMUSG00000026483.13, intron 1 of 13) protein_coding-intron (ENSMUSG00000026483.13, intron 1 of 14) 36501 ENSMUSG00000026483.13 ENSMUSG00000026483 ENSMUST00000086267 Fam129a protein_coding Interval_63391 chr15 100779838 100781346 + 0 NA promoter-TSS (ENSMUSG00000023032.12) protein_coding-promoter-TSS (ENSMUSG00000023032.12) -22156 ENSMUSG00000023032.12 ENSMUSG00000023032 ENSMUST00000162744 Slc4a8 protein_coding Interval_103829 chr3 53468660 53469900 + 0 NA intron (ENSMUSG00000049504.12, intron 2 of 6) protein_coding-intron (ENSMUSG00000049504.12, intron 2 of 12) -6029 ENSMUSG00000042997.13 ENSMUSG00000042997 ENSMUST00000153342 Nhlrc3 protein_coding Interval_18494 chr10 86730893 86731531 + 0 NA TTS (ENSMUSG00000056366.5) processed_pseudogene-TTS (ENSMUSG00000056366.5) 1176 ENSMUSG00000056366.5 ENSMUSG00000056366 ENSMUST00000070435 Fabp3-ps1 processed_pseudogene Interval_150728 chr7 113897143 113897333 + 0 NA intron (ENSMUSG00000038156.16, intron 5 of 5) protein_coding-intron (ENSMUSG00000038156.16, intron 5 of 15) 131064 ENSMUSG00000038156.16 ENSMUSG00000038156 ENSMUST00000084696 Spon1 protein_coding Interval_98399 chr2 152075266 152076206 + 0 NA exon (ENSMUSG00000085946.1, exon 2 of 2) antisense-exon (ENSMUSG00000085946.1, exon 2 of 2) 1072 ENSMUSG00000085946.1 ENSMUSG00000085946 ENSMUST00000147463 AA387200 antisense Interval_118658 chr4 133032629 133033250 + 0 NA intron (ENSMUSG00000037692.14, intron 2 of 8) protein_coding-intron (ENSMUSG00000037692.14, intron 1 of 5) 21101 ENSMUSG00000037692.14 ENSMUSG00000037692 ENSMUST00000148518 Ahdc1 protein_coding Interval_106488 chr3 96663274 96664120 + 0 NA TTS (ENSMUSG00000090210.7) protein_coding-TTS (ENSMUSG00000090210.7) 3285 ENSMUSG00000105144.1 ENSMUSG00000105144 ENSMUST00000077278 Rpl21-ps11 processed_pseudogene Interval_46499 chr13 66637816 66638165 + 0 NA Intergenic Intergenic -15085 ENSMUSG00000114814.1 ENSMUSG00000114814 ENSMUST00000223830 Gm48361 processed_pseudogene Interval_58189 chr15 30522465 30522701 + 0 NA intron (ENSMUSG00000022240.10, intron 3 of 5) protein_coding-intron (ENSMUSG00000022240.10, intron 3 of 22) -67704 ENSMUSG00000087836.1 ENSMUSG00000087836 ENSMUST00000157211 Gm23956 rRNA Interval_34175 chr11 121101533 121102083 + 0 NA Intergenic Intergenic -4601 ENSMUSG00000084853.1 ENSMUSG00000084853 ENSMUST00000139327 Gm11791 lincRNA Interval_79647 chr18 34233696 34234055 + 0 NA intron (ENSMUSG00000005871.15, intron 1 of 13) protein_coding-intron (ENSMUSG00000005871.15, intron 1 of 15) 12951 ENSMUSG00000005871.15 ENSMUSG00000005871 ENSMUST00000167136 Apc protein_coding Interval_70779 chr17 14423849 14424165 + 0 NA Intergenic Intergenic 10517 ENSMUSG00000116688.2 ENSMUSG00000116688 ENSMUST00000231488 Gm49720 processed_pseudogene Interval_163335 chr9 20930802 20930992 + 0 NA intron (ENSMUSG00000004099.16, intron 10 of 38) protein_coding-intron (ENSMUSG00000004099.16, intron 10 of 38) -16733 ENSMUSG00000099147.1 ENSMUSG00000099147 ENSMUST00000184490 Mir7081 miRNA Interval_148531 chr7 82212249 82214195 + 0 NA intron (ENSMUSG00000030638.13, intron 1 of 5) protein_coding-intron (ENSMUSG00000030638.13, intron 1 of 8) 38066 ENSMUSG00000030638.13 ENSMUSG00000030638 ENSMUST00000178526 Sh3gl3 protein_coding Interval_66170 chr16 32110855 32111537 + 0 NA intron (ENSMUSG00000086146.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000086146.1, intron 1 of 1) 2331 ENSMUSG00000086146.1 ENSMUSG00000086146 ENSMUST00000125829 Gm15729 lincRNA Interval_38177 chr12 76209287 76209987 + 0 NA intron (ENSMUSG00000021056.8, intron 7 of 8) protein_coding-intron (ENSMUSG00000021056.8, intron 7 of 9) 19827 ENSMUSG00000021056.8 ENSMUSG00000021056 ENSMUST00000219327 Tex21 protein_coding Interval_109094 chr3 135698686 135699168 + 0 NA Intergenic Intergenic -44361 ENSMUSG00000106149.1 ENSMUSG00000106149 ENSMUST00000196513 Gm43430 TEC Interval_25848 chr11 52122392 52122653 + 0 NA exon (ENSMUSG00000020349.4, exon 7 of 7) protein_coding-exon (ENSMUSG00000020349.4, exon 7 of 7) 3779 ENSMUSG00000020349.4 ENSMUSG00000020349 ENSMUST00000142939 Ppp2ca protein_coding Interval_8255 chr1 136754320 136754787 + 0 NA Intergenic Intergenic 3056 ENSMUSG00000096432.1 ENSMUSG00000096432 ENSMUST00000175316 Gm22132 miRNA Interval_173945 chrX 114756085 114757270 + 0 NA Intergenic Intergenic 18080 ENSMUSG00000083561.3 ENSMUSG00000083561 ENSMUST00000120046 Gm5942 processed_pseudogene Interval_73785 chr17 43628988 43630758 + 0 NA exon (ENSMUSG00000040140.15, exon 1 of 5) protein_coding-exon (ENSMUSG00000040140.15, exon 1 of 5) 393 ENSMUSG00000040140.15 ENSMUSG00000040140 ENSMUST00000233077 Tdrd6 protein_coding Interval_27759 chr11 69825302 69825884 + 0 NA exon (ENSMUSG00000051790.15, exon 7 of 7) protein_coding-exon (ENSMUSG00000051790.15, exon 7 of 7) 2966 ENSMUSG00000051790.15 ENSMUSG00000051790 ENSMUST00000140477 Nlgn2 protein_coding Interval_79846 chr18 35552925 35554654 + 0 NA promoter-TSS (ENSMUSG00000088059.1) snoRNA-promoter-TSS (ENSMUSG00000088059.1) 377 ENSMUSG00000117869.1 ENSMUSG00000117869 ENSMUST00000235976 Snhg4 processed_transcript Interval_29480 chr11 84268232 84268492 + 0 NA intron (ENSMUSG00000020532.18, intron 24 of 55) protein_coding-intron (ENSMUSG00000020532.18, intron 22 of 53) 78769 ENSMUSG00000103122.1 ENSMUSG00000103122 ENSMUST00000194891 Gm37391 TEC Interval_108061 chr3 121279197 121280211 + 0 NA intron (ENSMUSG00000028132.15, intron 3 of 4) protein_coding-intron (ENSMUSG00000028132.15, intron 3 of 3) 2180 ENSMUSG00000104902.1 ENSMUSG00000104902 ENSMUST00000197350 Gm30517 processed_pseudogene Interval_93916 chr2 79255036 79256324 + 0 NA promoter-TSS (ENSMUSG00000027009.18) protein_coding-promoter-TSS (ENSMUSG00000027009.18) 254 ENSMUSG00000027009.18 ENSMUSG00000027009 ENSMUST00000126312 Itga4 protein_coding Interval_2675 chr1 43186132 43186753 + 0 NA intron (ENSMUSG00000008136.14, intron 1 of 5) protein_coding-intron (ENSMUSG00000008136.14, intron 1 of 5) -2714 ENSMUSG00000094497.1 ENSMUSG00000094497 ENSMUST00000178557 Gm8210 processed_pseudogene Interval_3158 chr1 54186695 54186914 + 0 NA intron (ENSMUSG00000042807.15, intron 1 of 3) protein_coding-intron (ENSMUSG00000042807.15, intron 1 of 28) -31708 ENSMUSG00000102868.1 ENSMUSG00000102868 ENSMUST00000192858 Gm37633 TEC Interval_105195 chr3 83763941 83764793 + 0 NA Intergenic Intergenic -2486 ENSMUSG00000027996.13 ENSMUSG00000027996 ENSMUST00000154794 Sfrp2 protein_coding Interval_60109 chr15 65824875 65825082 + 0 NA exon (ENSMUSG00000015002.18, exon 5 of 5) protein_coding-exon (ENSMUSG00000015002.18, exon 5 of 5) -26143 ENSMUSG00000015002.18 ENSMUSG00000015002 ENSMUST00000174749 Efr3a protein_coding Interval_33626 chr11 117608242 117609242 + 0 NA Intergenic Intergenic -2505 ENSMUSG00000054418.6 ENSMUSG00000054418 ENSMUST00000155384 2900041M22Rik processed_transcript Interval_69060 chr16 90374453 90374749 + 0 NA Intergenic Intergenic -11484 ENSMUSG00000116849.1 ENSMUSG00000116849 ENSMUST00000231427 Gm49710 lincRNA Interval_43235 chr13 26312212 26313201 + 0 NA promoter-TSS (ENSMUSG00000084811.2) lincRNA-promoter-TSS (ENSMUSG00000084811.2) -300 ENSMUSG00000084811.2 ENSMUSG00000084811 ENSMUST00000123438 1700092E19Rik lincRNA Interval_143872 chr7 16864087 16864352 + 0 NA intron (ENSMUSG00000041187.16, intron 1 of 3) protein_coding-intron (ENSMUSG00000041187.16, intron 15 of 17) 872 ENSMUSG00000041187.16 ENSMUSG00000041187 ENSMUST00000205798 Prkd2 protein_coding Interval_107264 chr3 105058599 105059281 + 0 NA Intergenic Intergenic -6015 ENSMUSG00000062127.11 ENSMUSG00000062127 ENSMUST00000199002 Cttnbp2nl protein_coding Interval_114746 chr4 84691832 84692255 + 0 NA Intergenic Intergenic -5820 ENSMUSG00000081775.1 ENSMUSG00000081775 ENSMUST00000119869 Gm12420 processed_pseudogene Interval_1948 chr1 34858506 34860732 + 0 NA intron (ENSMUSG00000026123.11, intron 1 of 3) protein_coding-intron (ENSMUSG00000026123.11, intron 1 of 7) -16585 ENSMUSG00000037503.12 ENSMUSG00000037503 ENSMUST00000140534 Fam168b protein_coding Interval_80872 chr18 49770264 49771510 + 0 NA Intergenic Intergenic 15093 ENSMUSG00000087020.1 ENSMUSG00000087020 ENSMUST00000149935 Gm16283 processed_transcript Interval_102160 chr3 18934462 18934654 + 0 NA Intergenic Intergenic 181481 ENSMUSG00000103264.1 ENSMUSG00000103264 ENSMUST00000194363 Gm30341 processed_pseudogene Interval_166232 chr9 57650943 57651163 + 0 NA TTS (ENSMUSG00000032312.7) protein_coding-TTS (ENSMUSG00000032312.7) -16986 ENSMUSG00000032312.7 ENSMUSG00000032312 ENSMUST00000213943 Csk protein_coding Interval_110815 chr4 8704214 8704736 + 0 NA intron (ENSMUSG00000041235.12, intron 1 of 37) protein_coding-intron (ENSMUSG00000041235.12, intron 1 of 37) -30893 ENSMUSG00000082122.1 ENSMUSG00000082122 ENSMUST00000120923 Gm11809 processed_pseudogene Interval_173209 chrX 74233565 74233759 + 0 NA intron (ENSMUSG00000031328.16, intron 27 of 46) protein_coding-intron (ENSMUSG00000031328.16, intron 27 of 46) 7641 ENSMUSG00000031328.16 ENSMUSG00000031328 ENSMUST00000239316 Flna protein_coding Interval_52188 chr14 39532472 39533075 + 0 NA Intergenic Intergenic -60107 ENSMUSG00000041014.17 ENSMUSG00000041014 ENSMUST00000176122 Nrg3 protein_coding Interval_168377 chr9 79808852 79809378 + 0 NA intron (ENSMUSG00000034898.17, intron 6 of 6) protein_coding-intron (ENSMUSG00000034898.17, intron 6 of 6) 15474 ENSMUSG00000086918.1 ENSMUSG00000086918 ENSMUST00000151676 4930429F24Rik lincRNA Interval_110362 chr3 157423127 157424811 + 0 NA Intergenic Intergenic 13952 ENSMUSG00000104555.1 ENSMUSG00000104555 ENSMUST00000197739 Gm5983 processed_pseudogene Interval_130115 chr5 124376203 124376416 + 0 NA intron (ENSMUSG00000038095.15, intron 30 of 31) protein_coding-intron (ENSMUSG00000038095.15, intron 30 of 31) -13227 ENSMUSG00000029394.11 ENSMUSG00000029394 ENSMUST00000196910 Cdk2ap1 protein_coding Interval_161714 chr8 122281108 122282781 + 0 NA promoter-TSS (ENSMUSG00000049577.15) protein_coding-promoter-TSS (ENSMUSG00000049577.15) 23324 ENSMUSG00000043903.4 ENSMUSG00000043903 ENSMUST00000055537 Zfp469 protein_coding Interval_61724 chr15 83594022 83595513 + 0 NA intron (ENSMUSG00000016757.11, intron 1 of 13) protein_coding-intron (ENSMUSG00000016757.11, intron 1 of 13) 390 ENSMUSG00000016757.11 ENSMUSG00000016757 ENSMUST00000134334 Ttll12 protein_coding Interval_52325 chr14 44988460 44990094 + 0 NA exon (ENSMUSG00000037759.6, exon 1 of 2) protein_coding-exon (ENSMUSG00000037759.6, exon 1 of 2) 347 ENSMUSG00000115344.1 ENSMUSG00000115344 ENSMUST00000226133 Gm49364 processed_transcript Interval_76413 chr17 80016791 80018033 + 0 NA Intergenic Intergenic -16102 ENSMUSG00000088183.1 ENSMUSG00000088183 ENSMUST00000157558 Gm22215 snRNA Interval_127428 chr5 103864574 103865075 + 0 NA intron (ENSMUSG00000029312.12, intron 5 of 6) protein_coding-intron (ENSMUSG00000029312.12, intron 8 of 9) 9545 ENSMUSG00000029312.12 ENSMUSG00000029312 ENSMUST00000147184 Klhl8 protein_coding Interval_28654 chr11 77585096 77585379 + 0 NA intron (ENSMUSG00000017291.13, intron 2 of 19) protein_coding-intron (ENSMUSG00000017291.13, intron 1 of 18) 22578 ENSMUSG00000017291.13 ENSMUSG00000017291 ENSMUST00000058496 Taok1 protein_coding Interval_12501 chr1 194477648 194478169 + 0 NA Intergenic Intergenic -140310 ENSMUSG00000026640.12 ENSMUSG00000026640 ENSMUST00000124785 Plxna2 protein_coding Interval_10418 chr1 170650980 170652483 + 0 NA intron (ENSMUSG00000038463.8, intron 3 of 7) protein_coding-intron (ENSMUSG00000038463.8, intron 3 of 7) 7199 ENSMUSG00000038463.8 ENSMUSG00000038463 ENSMUST00000046792 Olfml2b protein_coding Interval_166113 chr9 56806601 56806855 + 0 NA Intergenic Intergenic -5467 ENSMUSG00000111037.1 ENSMUSG00000111037 ENSMUST00000215507 Gm47235 lincRNA Interval_159018 chr8 88840039 88840571 + 0 NA Intergenic Intergenic 22769 ENSMUSG00000109778.1 ENSMUSG00000109778 ENSMUST00000211407 Gm45504 TEC Interval_117709 chr4 125702323 125703666 + 0 NA intron (ENSMUSG00000001985.9, intron 13 of 15) protein_coding-intron (ENSMUSG00000001985.9, intron 13 of 15) 198245 ENSMUSG00000094403.1 ENSMUSG00000094403 ENSMUST00000102081 Mir692-2 miRNA Interval_79559 chr18 33776408 33777321 + 0 NA Intergenic Intergenic -18075 ENSMUSG00000087590.2 ENSMUSG00000087590 ENSMUST00000179138 Epb41l4aos lincRNA Interval_153536 chr8 3278816 3280653 + 0 NA promoter-TSS (ENSMUSG00000005534.10) protein_coding-promoter-TSS (ENSMUSG00000005534.10) 20030 ENSMUSG00000086065.1 ENSMUSG00000086065 ENSMUST00000128662 Gm16180 antisense Interval_144495 chr7 25461022 25461938 + 0 NA TTS (ENSMUSG00000074272.10) protein_coding-TTS (ENSMUSG00000074272.10) 16103 ENSMUSG00000074272.10 ENSMUSG00000074272 ENSMUST00000206981 Ceacam1 protein_coding Interval_28673 chr11 77694423 77696413 + 0 NA intron (ENSMUSG00000037857.16, intron 2 of 3) protein_coding-intron (ENSMUSG00000037857.16, intron 2 of 3) 9246 ENSMUSG00000037857.16 ENSMUSG00000037857 ENSMUST00000155238 Nufip2 protein_coding Interval_103736 chr3 52197953 52199923 + 0 NA exon (ENSMUSG00000103170.1, exon 2 of 2) lincRNA-exon (ENSMUSG00000103170.1, exon 2 of 2) 690 ENSMUSG00000103170.1 ENSMUSG00000103170 ENSMUST00000194488 Gm37170 lincRNA Interval_159093 chr8 90296869 90298696 + 0 NA intron (ENSMUSG00000043668.13, intron 1 of 5) protein_coding-intron (ENSMUSG00000043668.13, intron 1 of 6) 50349 ENSMUSG00000043668.13 ENSMUSG00000043668 ENSMUST00000176034 Tox3 protein_coding Interval_70002 chr17 4208747 4208924 + 0 NA Intergenic Intergenic -86733 ENSMUSG00000116615.1 ENSMUSG00000116615 ENSMUST00000231319 4930548J01Rik processed_transcript Interval_114613 chr4 83224113 83224678 + 0 NA exon (ENSMUSG00000038172.14, exon 20 of 20) protein_coding-exon (ENSMUSG00000038172.14, exon 20 of 20) 30407 ENSMUSG00000083245.1 ENSMUSG00000083245 ENSMUST00000117732 Gm11185 processed_pseudogene Interval_142037 chr6 136668461 136669761 + 0 NA Intergenic Intergenic -7238 ENSMUSG00000030214.7 ENSMUSG00000030214 ENSMUST00000133911 Plbd1 protein_coding Interval_77748 chr17 94871561 94871759 + 0 NA intron (ENSMUSG00000095193.2, intron 1 of 3) lincRNA-intron (ENSMUSG00000095193.2, intron 1 of 2) -1672 ENSMUSG00000065658.1 ENSMUSG00000065658 ENSMUST00000083724 Gm23102 snRNA Interval_150767 chr7 114233969 114234866 + 0 NA intron (ENSMUSG00000030754.9, intron 12 of 21) protein_coding-intron (ENSMUSG00000030754.9, intron 12 of 21) 20274 ENSMUSG00000030754.9 ENSMUSG00000030754 ENSMUST00000211417 Copb1 protein_coding Interval_132521 chr5 145691414 145691930 + 0 NA Intergenic Intergenic 28464 ENSMUSG00000075551.4 ENSMUSG00000075551 ENSMUST00000094111 Cyp3a41a protein_coding Interval_22443 chr11 10190478 10190907 + 0 NA Intergenic Intergenic -48645 ENSMUSG00000082312.1 ENSMUSG00000082312 ENSMUST00000117538 Gm11996 processed_pseudogene Interval_19497 chr10 100486659 100488048 + 0 NA promoter-TSS (ENSMUSG00000036676.14) protein_coding-promoter-TSS (ENSMUSG00000036676.14) -27 ENSMUSG00000036676.14 ENSMUSG00000036676 ENSMUST00000134477 Tmtc3 protein_coding Interval_56614 chr14 120864260 120865647 + 0 NA Intergenic Intergenic 37795 ENSMUSG00000115028.1 ENSMUSG00000115028 ENSMUST00000228417 Gm9391 processed_pseudogene Interval_167129 chr9 65545704 65546492 + 0 NA Intergenic Intergenic -16292 ENSMUSG00000111818.1 ENSMUSG00000111818 ENSMUST00000216282 Gm17749 processed_transcript Interval_88497 chr2 5639197 5639609 + 0 NA intron (ENSMUSG00000039145.16, intron 1 of 1) protein_coding-intron (ENSMUSG00000039145.16, intron 1 of 10) 35832 ENSMUSG00000082013.1 ENSMUSG00000082013 ENSMUST00000117145 Gm13216 processed_pseudogene Interval_146190 chr7 44603573 44606844 + 0 NA TTS (ENSMUSG00000030739.18) protein_coding-TTS (ENSMUSG00000030739.18) -9329 ENSMUSG00000108832.1 ENSMUSG00000108832 ENSMUST00000208849 Gm44832 antisense Interval_61859 chr15 84719794 84721197 + 0 NA promoter-TSS (ENSMUSG00000116396.1) lincRNA-promoter-TSS (ENSMUSG00000116396.1) -229 ENSMUSG00000116396.1 ENSMUSG00000116396 ENSMUST00000229841 Gm20556 lincRNA Interval_3891 chr1 64486126 64486439 + 0 NA Intergenic Intergenic -31705 ENSMUSG00000099658.1 ENSMUSG00000099658 ENSMUST00000187877 Gm28980 processed_pseudogene Interval_171865 chr9 121856956 121858433 + 0 NA promoter-TSS (ENSMUSG00000038412.8) protein_coding-promoter-TSS (ENSMUSG00000038412.8) 14 ENSMUSG00000111079.1 ENSMUSG00000111079 ENSMUST00000217491 Gm47112 antisense Interval_105619 chr3 88157644 88158558 + 0 NA exon (ENSMUSG00000001419.17, exon 4 of 11) protein_coding-exon (ENSMUSG00000001419.17, exon 4 of 11) -10151 ENSMUSG00000001419.17 ENSMUSG00000001419 ENSMUST00000152861 Mef2d protein_coding Interval_60401 chr15 73517563 73518352 + 0 NA promoter-TSS (ENSMUSG00000036661.14) protein_coding-promoter-TSS (ENSMUSG00000036661.14) 5285 ENSMUSG00000036661.14 ENSMUSG00000036661 ENSMUST00000160727 Dennd3 protein_coding Interval_107898 chr3 116661866 116663029 + 0 NA promoter-TSS (ENSMUSG00000089911.4) protein_coding-promoter-TSS (ENSMUSG00000089911.4) -1285 ENSMUSG00000106125.1 ENSMUSG00000106125 ENSMUST00000197000 4930512P04Rik lincRNA Interval_32827 chr11 111239579 111239771 + 0 NA Intergenic Intergenic -36425 ENSMUSG00000082272.1 ENSMUSG00000082272 ENSMUST00000121873 Gm11675 processed_pseudogene Interval_134662 chr6 30199829 30200306 + 0 NA Intergenic Intergenic 27174 ENSMUSG00000103108.2 ENSMUSG00000103108 ENSMUST00000194541 Rncr4 lincRNA Interval_67185 chr16 44207447 44207979 + 0 NA intron (ENSMUSG00000068284.14, intron 6 of 7) protein_coding-intron (ENSMUSG00000068284.14, intron 6 of 6) 34316 ENSMUSG00000068284.14 ENSMUSG00000068284 ENSMUST00000169582 Usf3 protein_coding Interval_15428 chr10 46230167 46230368 + 0 NA intron (ENSMUSG00000111182.1, intron 1 of 4) lincRNA-intron (ENSMUSG00000111182.1, intron 1 of 3) -70550 ENSMUSG00000111182.1 ENSMUSG00000111182 ENSMUST00000217441 Gm35430 lincRNA Interval_101510 chr3 3308628 3309624 + 0 NA Intergenic Intergenic -42099 ENSMUSG00000103028.1 ENSMUSG00000103028 ENSMUST00000195392 Gm8747 processed_pseudogene Interval_138646 chr6 90698972 90699266 + 0 NA intron (ENSMUSG00000034312.15, intron 1 of 13) protein_coding-intron (ENSMUSG00000034312.15, intron 1 of 13) 9388 ENSMUSG00000107999.1 ENSMUSG00000107999 ENSMUST00000204662 Gm44123 antisense Interval_43734 chr13 35852629 35853893 + 0 NA intron (ENSMUSG00000059288.14, intron 2 of 6) protein_coding-intron (ENSMUSG00000059288.14, intron 5 of 9) -52196 ENSMUSG00000114270.1 ENSMUSG00000114270 ENSMUST00000225277 Gm48746 lincRNA Interval_97991 chr2 146488800 146489077 + 0 NA intron (ENSMUSG00000037110.20, intron 1 of 41) protein_coding-intron (ENSMUSG00000037110.20, intron 1 of 15) 23406 ENSMUSG00000037110.20 ENSMUSG00000037110 ENSMUST00000124709 Ralgapa2 protein_coding Interval_155338 chr8 31800732 31801211 + 0 NA Intergenic Intergenic -61211 ENSMUSG00000093862.2 ENSMUSG00000093862 ENSMUST00000178878 Gm5117 processed_pseudogene Interval_38484 chr12 79358805 79359619 + 0 NA intron (ENSMUSG00000059060.15, intron 1 of 2) protein_coding-intron (ENSMUSG00000059060.15, intron 7 of 7) 31859 ENSMUSG00000059060.15 ENSMUSG00000059060 ENSMUST00000221257 Rad51b protein_coding Interval_77652 chr17 93581676 93581879 + 0 NA Intergenic Intergenic 98888 ENSMUSG00000117514.1 ENSMUSG00000117514 ENSMUST00000234106 Gm50002 processed_pseudogene Interval_5897 chr1 93022559 93023202 + 0 NA TTS (ENSMUSG00000014602.15) protein_coding-TTS (ENSMUSG00000014602.15) 4325 ENSMUSG00000014602.15 ENSMUSG00000014602 ENSMUST00000186861 Kif1a protein_coding Interval_48293 chr13 97829499 97829919 + 0 NA Intergenic Intergenic -3824 ENSMUSG00000114348.1 ENSMUSG00000114348 ENSMUST00000224296 Gm41031 lincRNA Interval_13256 chr10 13647793 13648397 + 0 NA intron (ENSMUSG00000019806.13, intron 4 of 4) protein_coding-intron (ENSMUSG00000019806.13, intron 4 of 4) 20897 ENSMUSG00000112055.1 ENSMUSG00000112055 ENSMUST00000219684 Gm48773 lincRNA Interval_90463 chr2 30606682 30607998 + 0 NA intron (ENSMUSG00000047363.4, intron 1 of 1) protein_coding-intron (ENSMUSG00000047363.4, intron 1 of 1) 2123 ENSMUSG00000047363.4 ENSMUSG00000047363 ENSMUST00000129719 Cstad protein_coding Interval_32463 chr11 107683110 107684312 + 0 NA intron (ENSMUSG00000020721.16, intron 2 of 3) protein_coding-intron (ENSMUSG00000020721.16, intron 30 of 31) 12659 ENSMUSG00000020721.16 ENSMUSG00000020721 ENSMUST00000153080 Helz protein_coding Interval_114256 chr4 70217053 70218148 + 0 NA exon (ENSMUSG00000039298.16, exon 37 of 37) protein_coding-exon (ENSMUSG00000039298.16, exon 37 of 37) 31773 ENSMUSG00000080902.1 ENSMUSG00000080902 ENSMUST00000120944 Ywhaq-ps3 transcribed_processed_pseudogene Interval_31040 chr11 97831959 97832177 + 0 NA intron (ENSMUSG00000038366.15, intron 4 of 4) protein_coding-intron (ENSMUSG00000038366.15, intron 4 of 6) -9251 ENSMUSG00000050538.8 ENSMUSG00000050538 ENSMUST00000170806 B230217C12Rik protein_coding Interval_137980 chr6 83907063 83908713 + 0 NA intron (ENSMUSG00000030016.14, intron 1 of 3) protein_coding-intron (ENSMUSG00000030016.14, intron 1 of 3) 10929 ENSMUSG00000107991.1 ENSMUSG00000107991 ENSMUST00000204303 Gm43919 processed_pseudogene Interval_54727 chr14 73625637 73626021 + 0 NA Intergenic Intergenic -35396 ENSMUSG00000096463.1 ENSMUSG00000096463 ENSMUST00000098874 Gm21750 protein_coding Interval_21936 chr11 5290617 5291780 + 0 NA intron (ENSMUSG00000041961.14, intron 3 of 8) protein_coding-intron (ENSMUSG00000041961.14, intron 2 of 8) 17113 ENSMUSG00000118486.1 ENSMUSG00000118486 ENSMUST00000238466 Gm30172 unitary_pseudogene Interval_72093 chr17 27999800 28001450 + 0 NA TTS (ENSMUSG00000117263.1) antisense-TTS (ENSMUSG00000117263.1) 1737 ENSMUSG00000117263.1 ENSMUSG00000117263 ENSMUST00000233367 Gm35290 antisense Interval_47548 chr13 87745269 87745656 + 0 NA Intergenic Intergenic -37509 ENSMUSG00000098011.1 ENSMUSG00000098011 ENSMUST00000182187 Gm21232 processed_pseudogene Interval_13935 chr10 24818067 24818480 + 0 NA intron (ENSMUSG00000019989.8, intron 4 of 4) protein_coding-intron (ENSMUSG00000019989.8, intron 5 of 24) 17899 ENSMUSG00000019989.8 ENSMUSG00000019989 ENSMUST00000220209 Enpp3 protein_coding Interval_156623 chr8 54923400 54923625 + 0 NA Intergenic Intergenic -31331 ENSMUSG00000031517.8 ENSMUSG00000031517 ENSMUST00000033915 Gpm6a protein_coding Interval_120508 chr4 149060830 149061261 + 0 NA intron (ENSMUSG00000028975.16, intron 2 of 3) protein_coding-intron (ENSMUSG00000028975.16, intron 2 of 8) -35338 ENSMUSG00000081086.1 ENSMUSG00000081086 ENSMUST00000118516 Gm9506 processed_pseudogene Interval_10366 chr1 170049737 170050012 + 0 NA intron (ENSMUSG00000026674.9, intron 2 of 3) protein_coding-intron (ENSMUSG00000026674.9, intron 2 of 17) 60888 ENSMUSG00000026674.9 ENSMUSG00000026674 ENSMUST00000194619 Ddr2 protein_coding Interval_14902 chr10 40968995 40969835 + 0 NA Intergenic Intergenic -65780 ENSMUSG00000111098.1 ENSMUSG00000111098 ENSMUST00000214667 Gm48057 lincRNA Interval_8614 chr1 143861805 143862722 + 0 NA Intergenic Intergenic 67588 ENSMUSG00000018189.12 ENSMUSG00000018189 ENSMUST00000185539 Uchl5 protein_coding Interval_76900 chr17 84837694 84838334 + 0 NA intron (ENSMUSG00000117595.1, intron 1 of 3) lincRNA-intron (ENSMUSG00000117595.1, intron 1 of 3) 2282 ENSMUSG00000117595.1 ENSMUSG00000117595 ENSMUST00000235108 Gm49981 lincRNA Interval_82214 chr18 69269989 69270195 + 0 NA Intergenic Intergenic 13804 ENSMUSG00000098060.1 ENSMUSG00000098060 ENSMUST00000183237 Gm4842 processed_pseudogene Interval_22281 chr11 8519652 8519967 + 0 NA intron (ENSMUSG00000020422.14, intron 13 of 30) protein_coding-intron (ENSMUSG00000020422.14, intron 13 of 30) -135956 ENSMUSG00000083553.1 ENSMUSG00000083553 ENSMUST00000117240 Gm11989 processed_pseudogene Interval_125974 chr5 76369028 76370146 + 0 NA Intergenic Intergenic -5799 ENSMUSG00000029236.4 ENSMUSG00000029236 ENSMUST00000031146 Nmu protein_coding Interval_6305 chr1 105757698 105757900 + 0 NA Intergenic Intergenic -6645 ENSMUSG00000101330.1 ENSMUSG00000101330 ENSMUST00000188288 Gm10193 processed_pseudogene Interval_68640 chr16 82704705 82705384 + 0 NA Intergenic Intergenic -123338 ENSMUSG00000094030.1 ENSMUSG00000094030 ENSMUST00000177665 Gm21833 protein_coding Interval_125448 chr5 67237337 67237760 + 0 NA Intergenic Intergenic -23206 ENSMUSG00000037720.16 ENSMUSG00000037720 ENSMUST00000163028 Tmem33 protein_coding Interval_53305 chr14 55915204 55915825 + 0 NA Intergenic Intergenic -15534 ENSMUSG00000022223.9 ENSMUSG00000022223 ENSMUST00000227677 Sdr39u1 protein_coding Interval_44725 chr13 47849523 47849781 + 0 NA Intergenic Intergenic -60783 ENSMUSG00000114959.1 ENSMUSG00000114959 ENSMUST00000223677 G630093K05Rik lincRNA Interval_5827 chr1 92271804 92272204 + 0 NA Intergenic Intergenic -52506 ENSMUSG00000101265.1 ENSMUSG00000101265 ENSMUST00000187370 Gm29099 lincRNA Interval_113028 chr4 47034888 47036002 + 0 NA intron (ENSMUSG00000066191.12, intron 8 of 14) protein_coding-intron (ENSMUSG00000066191.12, intron 8 of 14) -6153 ENSMUSG00000081561.1 ENSMUSG00000081561 ENSMUST00000119580 Gm12425 processed_pseudogene Interval_50785 chr14 19830942 19831420 + 0 NA Intergenic Intergenic -7744 ENSMUSG00000114350.1 ENSMUSG00000114350 ENSMUST00000225736 D14Ertd670e lincRNA Interval_116797 chr4 117339682 117340555 + 0 NA intron (ENSMUSG00000028677.19, intron 2 of 2) protein_coding-intron (ENSMUSG00000028677.19, intron 2 of 14) 43974 ENSMUSG00000085749.1 ENSMUSG00000085749 ENSMUST00000139618 Gm12843 antisense Interval_15568 chr10 51595240 51595641 + 0 NA Intergenic Intergenic -4923 ENSMUSG00000019909.4 ENSMUSG00000019909 ENSMUST00000020064 Fam162b protein_coding Interval_120567 chr4 149415203 149416838 + 0 NA intron (ENSMUSG00000028960.20, intron 1 of 29) protein_coding-intron (ENSMUSG00000028960.20, intron 1 of 9) 9965 ENSMUSG00000028960.20 ENSMUSG00000028960 ENSMUST00000131986 Ube4b protein_coding Interval_89693 chr2 24677883 24679745 + 0 NA TTS (ENSMUSG00000004113.18) protein_coding-TTS (ENSMUSG00000004113.18) 4113 ENSMUSG00000083973.1 ENSMUSG00000083973 ENSMUST00000121558 Gm13459 processed_pseudogene Interval_71608 chr17 24839457 24839828 + 0 NA promoter-TSS (ENSMUSG00000024158.17) protein_coding-promoter-TSS (ENSMUSG00000024158.17) 10722 ENSMUSG00000045316.5 ENSMUSG00000045316 ENSMUST00000049642 Fahd1 protein_coding Interval_71584 chr17 24686317 24687713 + 0 NA intron (ENSMUSG00000007021.5, intron 2 of 3) protein_coding-intron (ENSMUSG00000007021.5, intron 2 of 3) 1184 ENSMUSG00000007021.5 ENSMUSG00000007021 ENSMUST00000007236 Syngr3 protein_coding Interval_19244 chr10 95731399 95731678 + 0 NA intron (ENSMUSG00000112188.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000112188.1, intron 1 of 2) 311 ENSMUSG00000112188.1 ENSMUSG00000112188 ENSMUST00000219583 Gm47708 lincRNA Interval_34515 chr12 4849836 4851580 + 0 NA exon (ENSMUSG00000051721.6, exon 2 of 2) protein_coding-exon (ENSMUSG00000051721.6, exon 2 of 2) 7405 ENSMUSG00000051721.6 ENSMUSG00000051721 ENSMUST00000085793 Wdcp protein_coding Interval_9835 chr1 162819583 162820399 + 0 NA Intergenic Intergenic -11517 ENSMUSG00000026692.12 ENSMUSG00000026692 ENSMUST00000140274 Fmo4 protein_coding Interval_77734 chr17 94769940 94770144 + 0 NA intron (ENSMUSG00000098090.8, intron 9 of 11) transcribed_unprocessed_pseudogene-intron (ENSMUSG00000098090.8, intron 7 of 9) 5217 ENSMUSG00000088591.1 ENSMUSG00000088591 ENSMUST00000157966 Gm23964 rRNA Interval_17042 chr10 70815438 70815732 + 0 NA exon (ENSMUSG00000112320.1, exon 2 of 2) lincRNA-exon (ENSMUSG00000112320.1, exon 2 of 2) 1740 ENSMUSG00000112320.1 ENSMUSG00000112320 ENSMUST00000218960 Gm48022 lincRNA Interval_89842 chr2 25919817 25920409 + 0 NA Intergenic Intergenic 56145 ENSMUSG00000058740.14 ENSMUSG00000058740 ENSMUST00000199269 Kcnt1 protein_coding Interval_19559 chr10 103235090 103237217 + 0 NA exon (ENSMUSG00000019892.13, exon 1 of 8) protein_coding-exon (ENSMUSG00000019892.13, exon 1 of 8) -22716 ENSMUSG00000112622.1 ENSMUSG00000112622 ENSMUST00000220380 Gm47164 TEC Interval_116860 chr4 117786935 117787670 + 0 NA Intergenic Intergenic -21654 ENSMUSG00000048626.5 ENSMUSG00000048626 ENSMUST00000062747 Klf17 protein_coding Interval_92827 chr2 66023283 66024370 + 0 NA TTS (ENSMUSG00000044647.16) protein_coding-TTS (ENSMUSG00000044647.16) -69756 ENSMUSG00000085160.1 ENSMUSG00000085160 ENSMUST00000155350 Gm13617 antisense Interval_153870 chr8 10360191 10360403 + 0 NA intron (ENSMUSG00000039057.11, intron 4 of 5) protein_coding-intron (ENSMUSG00000039057.11, intron 3 of 34) 111009 ENSMUSG00000039057.11 ENSMUSG00000039057 ENSMUST00000042103 Myo16 protein_coding Interval_76981 chr17 85358692 85358992 + 0 NA intron (ENSMUSG00000071037.6, intron 3 of 10) protein_coding-intron (ENSMUSG00000071037.6, intron 3 of 10) -139791 ENSMUSG00000097803.1 ENSMUSG00000097803 ENSMUST00000181130 Rpl31-ps16 processed_pseudogene Interval_172911 chrX 53268620 53270301 + 0 NA promoter-TSS (ENSMUSG00000036022.15) protein_coding-promoter-TSS (ENSMUSG00000036022.15) 345 ENSMUSG00000036022.15 ENSMUSG00000036022 ENSMUST00000143069 Fam122b protein_coding Interval_29319 chr11 82904851 82906397 + 0 NA promoter-TSS (ENSMUSG00000020692.14) protein_coding-promoter-TSS (ENSMUSG00000020692.14) -988 ENSMUSG00000020692.14 ENSMUSG00000020692 ENSMUST00000147915 Nle1 protein_coding Interval_59378 chr15 51983689 51984061 + 0 NA intron (ENSMUSG00000022314.10, intron 1 of 13) protein_coding-intron (ENSMUSG00000022314.10, intron 1 of 13) 7635 ENSMUSG00000022314.10 ENSMUSG00000022314 ENSMUST00000226529 Rad21 protein_coding Interval_69425 chr16 93255544 93255963 + 0 NA Intergenic Intergenic 109637 ENSMUSG00000100277.8 ENSMUSG00000100277 ENSMUST00000231338 1810053B23Rik processed_transcript Interval_123803 chr5 35623072 35623292 + 0 NA Intergenic Intergenic -34419 ENSMUSG00000055061.5 ENSMUSG00000055061 ENSMUST00000124643 4931431C16Rik antisense Interval_148898 chr7 89923044 89923310 + 0 NA TTS (ENSMUSG00000062797.14) protein_coding-TTS (ENSMUSG00000062797.14) 18022 ENSMUSG00000062797.14 ENSMUSG00000062797 ENSMUST00000207695 Hikeshi protein_coding Interval_29349 chr11 83370199 83370809 + 0 NA intron (ENSMUSG00000035152.14, intron 17 of 20) protein_coding-intron (ENSMUSG00000035152.14, intron 18 of 21) -3503 ENSMUSG00000077217.1 ENSMUSG00000077217 ENSMUST00000104029 Gm23951 snoRNA Interval_93917 chr2 79265801 79266267 + 0 NA intron (ENSMUSG00000027009.18, intron 2 of 3) protein_coding-intron (ENSMUSG00000027009.18, intron 2 of 27) 10608 ENSMUSG00000027009.18 ENSMUSG00000027009 ENSMUST00000126312 Itga4 protein_coding Interval_89392 chr2 20383164 20383545 + 0 NA intron (ENSMUSG00000036617.17, intron 2 of 3) protein_coding-intron (ENSMUSG00000036617.17, intron 3 of 7) 49580 ENSMUSG00000085477.7 ENSMUSG00000085477 ENSMUST00000149398 Gm13335 antisense Interval_27933 chr11 70963943 70964927 + 0 NA intron (ENSMUSG00000040667.11, intron 3 of 14) protein_coding-intron (ENSMUSG00000040667.11, intron 3 of 16) -6072 ENSMUSG00000018449.12 ENSMUSG00000018449 ENSMUST00000129540 Rpain protein_coding Interval_33374 chr11 116187402 116188628 + 0 NA intron (ENSMUSG00000020777.16, intron 2 of 13) protein_coding-intron (ENSMUSG00000020777.16, intron 2 of 13) -6801 ENSMUSG00000020777.16 ENSMUSG00000020777 ENSMUST00000124684 Acox1 protein_coding Interval_52664 chr14 48370365 48370545 + 0 NA Intergenic Intergenic -6053 ENSMUSG00000080522.1 ENSMUSG00000080522 ENSMUST00000116872 Gm23881 miRNA Interval_69621 chr16 94656605 94657754 + 0 NA intron (ENSMUSG00000022897.15, intron 2 of 5) protein_coding-intron (ENSMUSG00000022897.15, intron 2 of 11) 36802 ENSMUSG00000081692.1 ENSMUSG00000081692 ENSMUST00000119372 Gm15971 processed_pseudogene Interval_68604 chr16 80925736 80925937 + 0 NA Intergenic Intergenic -23813 ENSMUSG00000116566.1 ENSMUSG00000116566 ENSMUST00000232298 Fkbp1a-ps3 processed_pseudogene Interval_116769 chr4 117189417 117190909 + 0 NA TTS (ENSMUSG00000095676.1) snRNA-TTS (ENSMUSG00000095676.1) 221 ENSMUSG00000095676.1 ENSMUSG00000095676 ENSMUST00000093716 Gm25099 snRNA Interval_1111 chr1 15804083 15806491 + 0 NA promoter-TSS (ENSMUSG00000025925.14) protein_coding-promoter-TSS (ENSMUSG00000025925.14) -2354 ENSMUSG00000025925.14 ENSMUSG00000025925 ENSMUST00000188684 Terf1 protein_coding Interval_76268 chr17 78615696 78615925 + 0 NA intron (ENSMUSG00000024076.10, intron 9 of 12) protein_coding-intron (ENSMUSG00000024076.10, intron 10 of 13) 41882 ENSMUSG00000024076.10 ENSMUSG00000024076 ENSMUST00000232864 Vit protein_coding Interval_77011 chr17 85623365 85623944 + 0 NA intron (ENSMUSG00000038805.10, intron 1 of 1) protein_coding-intron (ENSMUSG00000038805.10, intron 1 of 2) -2653 ENSMUSG00000099635.1 ENSMUSG00000099635 ENSMUST00000188560 Gm28528 antisense Interval_64694 chr16 14232257 14232958 + 0 NA exon (ENSMUSG00000018830.10, exon 13 of 41) protein_coding-exon (ENSMUSG00000018830.10, exon 13 of 41) 57480 ENSMUSG00000022678.16 ENSMUSG00000022678 ENSMUST00000149232 Nde1 protein_coding Interval_17200 chr10 74925061 74926247 + 0 NA Intergenic Intergenic -41555 ENSMUSG00000040009.6 ENSMUSG00000040009 ENSMUST00000159991 Gnaz protein_coding Interval_87099 chr19 46094406 46094741 + 0 NA Intergenic Intergenic 18584 ENSMUSG00000015176.11 ENSMUSG00000015176 ENSMUST00000224490 Nolc1 protein_coding Interval_15730 chr10 54955092 54955605 + 0 NA Intergenic Intergenic -101845 ENSMUSG00000112575.1 ENSMUSG00000112575 ENSMUST00000220306 Gm31849 processed_pseudogene Interval_148878 chr7 89632445 89633323 + 0 NA promoter-TSS (ENSMUSG00000030621.17) protein_coding-promoter-TSS (ENSMUSG00000030621.17) 240 ENSMUSG00000092071.1 ENSMUSG00000092071 ENSMUST00000172178 A230065N10Rik antisense Interval_54971 chr14 76583942 76584643 + 0 NA Intergenic Intergenic -27403 ENSMUSG00000052584.10 ENSMUSG00000052584 ENSMUST00000228524 Serp2 protein_coding Interval_85186 chr19 23511297 23512016 + 0 NA Intergenic Intergenic -63214 ENSMUSG00000033207.7 ENSMUSG00000033207 ENSMUST00000236349 Mamdc2 protein_coding Interval_10022 chr1 165128586 165128796 + 0 NA Intergenic Intergenic 20258 ENSMUSG00000089967.1 ENSMUSG00000089967 ENSMUST00000162550 Gm16550 processed_pseudogene Interval_73658 chr17 42494463 42494936 + 0 NA intron (ENSMUSG00000042256.5, intron 2 of 2) protein_coding-intron (ENSMUSG00000042256.5, intron 3 of 3) 116696 ENSMUSG00000043972.8 ENSMUSG00000043972 ENSMUST00000068355 Opn5 protein_coding Interval_88030 chr19 58119209 58119704 + 0 NA intron (ENSMUSG00000054843.9, intron 28 of 28) protein_coding-intron (ENSMUSG00000054843.9, intron 28 of 28) -23425 ENSMUSG00000117871.1 ENSMUSG00000117871 ENSMUST00000235250 Gm50287 lincRNA Interval_107862 chr3 116379811 116381044 + 0 NA intron (ENSMUSG00000033502.15, intron 4 of 14) protein_coding-intron (ENSMUSG00000033502.15, intron 4 of 15) 30324 ENSMUSG00000106005.1 ENSMUSG00000106005 ENSMUST00000196669 Gm29151 antisense Interval_59785 chr15 59229340 59229567 + 0 NA Intergenic Intergenic -9036 ENSMUSG00000115604.1 ENSMUSG00000115604 ENSMUST00000226413 Gm7691 processed_pseudogene Interval_62072 chr15 86213917 86215009 + 0 NA promoter-TSS (ENSMUSG00000051864.10) protein_coding-promoter-TSS (ENSMUSG00000051864.10) -1806 ENSMUSG00000088071.1 ENSMUSG00000088071 ENSMUST00000157446 Gm22818 snRNA Interval_10630 chr1 172325818 172326883 + 0 NA exon (ENSMUSG00000038026.12, exon 3 of 4) protein_coding-exon (ENSMUSG00000038026.12, exon 3 of 4) 1758 ENSMUSG00000038026.12 ENSMUSG00000038026 ENSMUST00000194860 Kcnj9 protein_coding Interval_72667 chr17 31441000 31441243 + 0 NA intron (ENSMUSG00000041119.12, intron 1 of 15) protein_coding-intron (ENSMUSG00000041119.12, intron 4 of 18) -6103 ENSMUSG00000118157.1 ENSMUSG00000118157 ENSMUST00000236083 Gm9902 antisense Interval_97333 chr2 134643485 134644426 + 0 NA promoter-TSS (ENSMUSG00000034723.11) protein_coding-promoter-TSS (ENSMUSG00000034723.11) 177 ENSMUSG00000034723.11 ENSMUSG00000034723 ENSMUST00000110119 Tmx4 protein_coding Interval_130787 chr5 130404866 130405812 + 0 NA intron (ENSMUSG00000060371.12, intron 1 of 2) protein_coding-intron (ENSMUSG00000060371.12, intron 1 of 6) 20642 ENSMUSG00000060371.12 ENSMUSG00000060371 ENSMUST00000111288 Caln1 protein_coding Interval_31705 chr11 102346626 102347680 + 0 NA Intergenic Intergenic 19050 ENSMUSG00000006574.15 ENSMUSG00000006574 ENSMUST00000151050 Slc4a1 protein_coding Interval_45999 chr13 59886814 59887165 + 0 NA Intergenic Intergenic 13347 ENSMUSG00000114669.1 ENSMUSG00000114669 ENSMUST00000225895 Gm48384 lincRNA Interval_104744 chr3 70003960 70004934 + 0 NA Intergenic Intergenic -3166 ENSMUSG00000027788.6 ENSMUSG00000027788 ENSMUST00000053013 Otol1 protein_coding Interval_145293 chr7 31171498 31172470 + 0 NA Intergenic Intergenic 9626 ENSMUSG00000100985.1 ENSMUSG00000100985 ENSMUST00000190947 Gm10640 antisense Interval_12265 chr1 191256192 191258172 + 0 NA Intergenic Intergenic 7758 ENSMUSG00000103685.1 ENSMUSG00000103685 ENSMUST00000193444 Gm37074 TEC Interval_134900 chr6 33326539 33327532 + 0 NA intron (ENSMUSG00000029763.17, intron 5 of 6) protein_coding-intron (ENSMUSG00000029763.17, intron 5 of 17) -6382 ENSMUSG00000029763.17 ENSMUSG00000029763 ENSMUST00000134653 Exoc4 protein_coding Interval_96068 chr2 119570601 119570855 + 0 NA intron (ENSMUSG00000014077.13, intron 3 of 3) protein_coding-intron (ENSMUSG00000014077.13, intron 3 of 6) 22916 ENSMUSG00000014077.13 ENSMUSG00000014077 ENSMUST00000137585 Chp1 protein_coding Interval_56992 chr15 3582054 3583692 + 0 NA promoter-TSS (ENSMUSG00000055737.12) protein_coding-promoter-TSS (ENSMUSG00000055737.12) 339 ENSMUSG00000055737.12 ENSMUSG00000055737 ENSMUST00000159912 Ghr protein_coding Interval_117996 chr4 127619748 127620690 + 0 NA Intergenic Intergenic 145317 ENSMUSG00000087470.2 ENSMUSG00000087470 ENSMUST00000146587 A630031M04Rik lincRNA Interval_31263 chr11 99196308 99196527 + 0 NA Intergenic Intergenic 17026 ENSMUSG00000037935.16 ENSMUSG00000037935 ENSMUST00000128215 Smarce1 protein_coding Interval_89969 chr2 26915897 26917059 + 0 NA promoter-TSS (ENSMUSG00000015790.16) protein_coding-promoter-TSS (ENSMUSG00000015790.16) -178 ENSMUSG00000015790.16 ENSMUSG00000015790 ENSMUST00000133513 Surf1 protein_coding Interval_48669 chr13 101015400 101015720 + 0 NA Intergenic Intergenic -1574 ENSMUSG00000098005.1 ENSMUSG00000098005 ENSMUST00000182472 Gm6114 processed_pseudogene Interval_36356 chr12 41859001 41860027 + 0 NA intron (ENSMUSG00000056899.10, intron 5 of 5) protein_coding-intron (ENSMUSG00000056899.10, intron 6 of 6) -30991 ENSMUSG00000113105.1 ENSMUSG00000113105 ENSMUST00000221020 Gm47371 antisense Interval_2563 chr1 40381367 40381646 + 0 NA Intergenic Intergenic 27654 ENSMUSG00000103230.1 ENSMUSG00000103230 ENSMUST00000192199 Gm17970 processed_pseudogene Interval_48713 chr13 101805539 101806016 + 0 NA Intergenic Intergenic 36529 ENSMUSG00000114223.1 ENSMUSG00000114223 ENSMUST00000225177 Gm19108 processed_pseudogene Interval_59363 chr15 51913998 51914275 + 0 NA Intergenic Intergenic 17049 ENSMUSG00000115616.1 ENSMUSG00000115616 ENSMUST00000226818 Gm48923 lincRNA Interval_63662 chr15 102649582 102649825 + 0 NA Intergenic Intergenic -7865 ENSMUSG00000116056.1 ENSMUSG00000116056 ENSMUST00000229601 Gm4544 lincRNA Interval_163038 chr9 14716949 14717257 + 0 NA exon (ENSMUSG00000074508.4, exon 4 of 5) antisense-exon (ENSMUSG00000074508.4, exon 4 of 5) -12033 ENSMUSG00000036912.18 ENSMUSG00000036912 ENSMUST00000076946 Piwil4 protein_coding Interval_174122 chrX 135795443 135797406 + 0 NA intron (ENSMUSG00000043384.15, intron 5 of 10) protein_coding-intron (ENSMUSG00000043384.15, intron 5 of 10) -1164 ENSMUSG00000043384.15 ENSMUSG00000043384 ENSMUST00000166554 Gprasp1 protein_coding Interval_61888 chr15 84965514 84966243 + 0 NA intron (ENSMUSG00000036046.14, intron 1 of 3) protein_coding-intron (ENSMUSG00000036046.14, intron 1 of 9) -14255 ENSMUSG00000080441.1 ENSMUSG00000080441 ENSMUST00000116791 Mir1249 miRNA Interval_89799 chr2 25520382 25520653 + 0 NA intron (ENSMUSG00000026942.13, intron 7 of 8) protein_coding-intron (ENSMUSG00000026942.13, intron 9 of 10) 16610 ENSMUSG00000015095.12 ENSMUSG00000015095 ENSMUST00000148845 Fbxw5 protein_coding Interval_17745 chr10 79864521 79866333 + 0 NA promoter-TSS (ENSMUSG00000090860.1) antisense-promoter-TSS (ENSMUSG00000090860.1) -993 ENSMUSG00000090860.1 ENSMUSG00000090860 ENSMUST00000166593 Gm17134 antisense Interval_87693 chr19 55087484 55088549 + 0 NA intron (ENSMUSG00000024978.11, intron 9 of 22) protein_coding-intron (ENSMUSG00000024978.11, intron 7 of 20) -11486 ENSMUSG00000118099.1 ENSMUSG00000118099 ENSMUST00000237370 Gm31356 antisense Interval_39416 chr12 87283628 87284050 + 0 NA intron (ENSMUSG00000050671.12, intron 2 of 3) protein_coding-intron (ENSMUSG00000050671.12, intron 2 of 4) 3234 ENSMUSG00000050671.12 ENSMUSG00000050671 ENSMUST00000145714 Ism2 protein_coding Interval_154032 chr8 12060570 12061582 + 0 NA Intergenic Intergenic 112737 ENSMUSG00000109995.1 ENSMUSG00000109995 ENSMUST00000209977 B020031H02Rik lincRNA Interval_141838 chr6 134845970 134846614 + 0 NA intron (ENSMUSG00000032652.13, intron 1 of 1) protein_coding-intron (ENSMUSG00000032652.13, intron 1 of 4) -4866 ENSMUSG00000032652.13 ENSMUSG00000032652 ENSMUST00000203742 Crebl2 protein_coding Interval_28443 chr11 75918602 75919111 + 0 NA intron (ENSMUSG00000020847.15, intron 1 of 5) protein_coding-intron (ENSMUSG00000020847.15, intron 1 of 4) 19573 ENSMUSG00000020847.15 ENSMUSG00000020847 ENSMUST00000152035 Rph3al protein_coding Interval_119914 chr4 140881438 140881868 + 0 NA Intergenic Intergenic 8960 ENSMUSG00000087045.1 ENSMUSG00000087045 ENSMUST00000140588 4930515B02Rik lincRNA Interval_93498 chr2 73560094 73562116 + 0 NA Intergenic Intergenic 19233 ENSMUSG00000027107.3 ENSMUSG00000027107 ENSMUST00000028515 Chrna1 protein_coding Interval_77491 chr17 90210299 90210488 + 0 NA intron (ENSMUSG00000024109.18, intron 2 of 2) protein_coding-intron (ENSMUSG00000024109.18, intron 16 of 20) -52159 ENSMUSG00000092706.1 ENSMUSG00000092706 ENSMUST00000174965 Gm24510 miRNA Interval_165387 chr9 47271737 47272204 + 0 NA intron (ENSMUSG00000109844.2, intron 3 of 4) lincRNA-intron (ENSMUSG00000109844.2, intron 4 of 5) -1227 ENSMUSG00000109844.2 ENSMUSG00000109844 ENSMUST00000209906 Gm31816 lincRNA Interval_29337 chr11 83291030 83292623 + 0 NA promoter-TSS (ENSMUSG00000093483.1) processed_transcript-promoter-TSS (ENSMUSG00000093483.1) 84 ENSMUSG00000093483.1 ENSMUSG00000093483 ENSMUST00000176016 AA465934 processed_transcript Interval_135616 chr6 41617882 41618087 + 0 NA intron (ENSMUSG00000029869.7, intron 12 of 17) protein_coding-intron (ENSMUSG00000029869.7, intron 12 of 17) 4686 ENSMUSG00000029869.7 ENSMUSG00000029869 ENSMUST00000167497 Ephb6 protein_coding Interval_87364 chr19 47953269 47953460 + 0 NA intron (ENSMUSG00000046585.9, intron 6 of 17) protein_coding-intron (ENSMUSG00000046585.9, intron 6 of 17) 15689 ENSMUSG00000046585.9 ENSMUSG00000046585 ENSMUST00000066308 Cfap58 protein_coding Interval_2717 chr1 43820209 43821772 + 0 NA intron (ENSMUSG00000057363.12, intron 1 of 6) protein_coding-intron (ENSMUSG00000057363.12, intron 1 of 14) 6760 ENSMUSG00000057363.12 ENSMUSG00000057363 ENSMUST00000128261 Uxs1 protein_coding Interval_44144 chr13 41197470 41197809 + 0 NA intron (ENSMUSG00000021364.16, intron 1 of 7) protein_coding-intron (ENSMUSG00000021364.16, intron 1 of 7) 20751 ENSMUSG00000114388.1 ENSMUSG00000114388 ENSMUST00000225455 Gm48510 lincRNA Interval_117954 chr4 127313499 127314440 + 0 NA promoter-TSS (ENSMUSG00000050234.7) protein_coding-promoter-TSS (ENSMUSG00000050234.7) 70 ENSMUSG00000050234.7 ENSMUSG00000050234 ENSMUST00000053753 Gja4 protein_coding Interval_140302 chr6 116278694 116279109 + 0 NA intron (ENSMUSG00000042213.17, intron 3 of 6) protein_coding-intron (ENSMUSG00000042213.17, intron 2 of 9) 14636 ENSMUSG00000042213.17 ENSMUSG00000042213 ENSMUST00000221824 Zfand4 protein_coding Interval_170359 chr9 107389106 107390092 + 0 NA Intergenic Intergenic -35613 ENSMUSG00000102144.1 ENSMUSG00000102144 ENSMUST00000194547 4930429P21Rik lincRNA Interval_168927 chr9 89099007 89099265 + 0 NA Intergenic Intergenic -6446 ENSMUSG00000079162.8 ENSMUSG00000079162 ENSMUST00000189557 Trim43b protein_coding Interval_22696 chr11 13212173 13212407 + 0 NA Intergenic Intergenic 214624 ENSMUSG00000084055.1 ENSMUSG00000084055 ENSMUST00000117869 Gm12004 processed_pseudogene Interval_124280 chr5 43497471 43498524 + 0 NA Intergenic Intergenic -17765 ENSMUSG00000061535.11 ENSMUSG00000061535 ENSMUST00000121872 C1qtnf7 protein_coding Interval_166305 chr9 58216168 58217114 + 0 NA Intergenic Intergenic -4509 ENSMUSG00000098886.1 ENSMUSG00000098886 ENSMUST00000184295 Mir6385 miRNA Interval_161603 chr8 121520785 121521524 + 0 NA intron (ENSMUSG00000092329.1, intron 1 of 15) protein_coding-intron (ENSMUSG00000092329.1, intron 1 of 15) 20715 ENSMUSG00000031809.10 ENSMUSG00000031809 ENSMUST00000182460 1700018B08Rik protein_coding Interval_5837 chr1 92371159 92372363 + 0 NA Intergenic Intergenic 47251 ENSMUSG00000101265.1 ENSMUSG00000101265 ENSMUST00000187370 Gm29099 lincRNA Interval_89124 chr2 16907996 16908282 + 0 NA Intergenic Intergenic 51879 ENSMUSG00000076950.1 ENSMUSG00000076950 ENSMUST00000103762 Gm24933 miRNA Interval_48938 chr13 105222260 105223457 + 0 NA TTS (ENSMUSG00000077578.1) snoRNA-TTS (ENSMUSG00000077578.1) 540 ENSMUSG00000077578.1 ENSMUSG00000077578 ENSMUST00000104390 Gm25631 snoRNA Interval_121201 chr4 154001846 154002216 + 0 NA intron (ENSMUSG00000039523.16, intron 9 of 14) protein_coding-intron (ENSMUSG00000039523.16, intron 18 of 21) -9700 ENSMUSG00000029028.14 ENSMUSG00000029028 ENSMUST00000163672 Lrrc47 protein_coding Interval_78902 chr18 21370961 21371398 + 0 NA Intergenic Intergenic 9752 ENSMUSG00000096341.1 ENSMUSG00000096341 ENSMUST00000093714 Gm22886 snRNA Interval_100759 chr2 172396122 172396491 + 0 NA intron (ENSMUSG00000074570.14, intron 1 of 5) protein_coding-intron (ENSMUSG00000074570.14, intron 1 of 4) 2405 ENSMUSG00000074570.14 ENSMUSG00000074570 ENSMUST00000228775 Cass4 protein_coding Interval_170815 chr9 110937083 110939324 + 0 NA Intergenic Intergenic 7872 ENSMUSG00000032494.12 ENSMUSG00000032494 ENSMUST00000199196 Tdgf1 protein_coding Interval_134827 chr6 31901129 31902350 + 0 NA intron (ENSMUSG00000087379.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000087379.1, intron 1 of 2) 115064 ENSMUSG00000087379.1 ENSMUSG00000087379 ENSMUST00000153328 Gm13849 lincRNA Interval_106350 chr3 95541903 95542411 + 0 NA intron (ENSMUSG00000038642.10, intron 3 of 7) protein_coding-intron (ENSMUSG00000038642.10, intron 3 of 7) 11739 ENSMUSG00000083822.1 ENSMUSG00000083822 ENSMUST00000121058 Hmgb1-ps5 processed_pseudogene Interval_57837 chr15 22840927 22841104 + 0 NA intron (ENSMUSG00000040420.15, intron 1 of 6) protein_coding-intron (ENSMUSG00000040420.15, intron 1 of 6) -94472 ENSMUSG00000091194.1 ENSMUSG00000091194 ENSMUST00000169624 Gm19840 processed_pseudogene Interval_80965 chr18 51383117 51383359 + 0 NA intron (ENSMUSG00000073565.5, intron 2 of 2) protein_coding-intron (ENSMUSG00000073565.5, intron 2 of 2) -128963 ENSMUSG00000095482.1 ENSMUSG00000095482 ENSMUST00000082886 Gm25739 snRNA Interval_482 chr1 6228230 6228632 + 0 NA intron (ENSMUSG00000025907.14, intron 1 of 13) protein_coding-intron (ENSMUSG00000025907.14, intron 2 of 23) 429 ENSMUSG00000025907.14 ENSMUSG00000025907 ENSMUST00000159656 Rb1cc1 protein_coding Interval_14697 chr10 39115613 39116285 + 0 NA Intergenic Intergenic 10168 ENSMUSG00000019846.11 ENSMUSG00000019846 ENSMUST00000163036 Lama4 protein_coding Interval_150263 chr7 109093008 109093488 + 0 NA Intergenic Intergenic -17006 ENSMUSG00000094199.1 ENSMUSG00000094199 ENSMUST00000179144 Gm25450 snRNA Interval_54157 chr14 65803723 65804081 + 0 NA Intergenic Intergenic -2035 ENSMUSG00000022033.9 ENSMUSG00000022033 ENSMUST00000139644 Pbk protein_coding Interval_153836 chr8 9451571 9451786 + 0 NA intron (ENSMUSG00000079157.4, intron 3 of 3) protein_coding-intron (ENSMUSG00000079157.4, intron 1 of 2) -7414 ENSMUSG00000109551.1 ENSMUSG00000109551 ENSMUST00000208065 4930435N07Rik TEC Interval_97379 chr2 135614068 135616206 + 0 NA Intergenic Intergenic -31553 ENSMUSG00000085631.1 ENSMUSG00000085631 ENSMUST00000129868 9630028H03Rik antisense Interval_95077 chr2 103736341 103736953 + 0 NA intron (ENSMUSG00000027185.15, intron 12 of 26) protein_coding-intron (ENSMUSG00000027185.15, intron 12 of 28) 21612 ENSMUSG00000032724.5 ENSMUSG00000032724 ENSMUST00000131122 Abtb2 protein_coding Interval_93752 chr2 76597747 76598388 + 0 NA exon (ENSMUSG00000042359.18, exon 27 of 27) protein_coding-exon (ENSMUSG00000042359.18, exon 27 of 27) 42666 ENSMUSG00000002731.6 ENSMUSG00000002731 ENSMUST00000140493 Prkra protein_coding Interval_32008 chr11 104430022 104430587 + 0 NA intron (ENSMUSG00000018412.16, intron 1 of 2) protein_coding-intron (ENSMUSG00000018412.16, intron 2 of 14) -5004 ENSMUSG00000106014.1 ENSMUSG00000106014 ENSMUST00000195891 Gm47315 miRNA Interval_104189 chr3 60106215 60107161 + 0 NA Intergenic Intergenic 21059 ENSMUSG00000084647.1 ENSMUSG00000084647 ENSMUST00000122698 Gm24382 snRNA Interval_107829 chr3 115948006 115948410 + 0 NA intron (ENSMUSG00000054414.4, intron 10 of 10) protein_coding-intron (ENSMUSG00000054414.4, intron 10 of 10) 5111 ENSMUSG00000105645.1 ENSMUSG00000105645 ENSMUST00000199743 Gm6649 processed_pseudogene Interval_165468 chr9 48480008 48481295 + 0 NA promoter-TSS (ENSMUSG00000032026.7) protein_coding-promoter-TSS (ENSMUSG00000032026.7) -61 ENSMUSG00000032026.7 ENSMUSG00000032026 ENSMUST00000214161 Rexo2 protein_coding Interval_147449 chr7 67355859 67356257 + 0 NA intron (ENSMUSG00000030557.17, intron 1 of 11) protein_coding-intron (ENSMUSG00000030557.17, intron 1 of 10) 14922 ENSMUSG00000109363.1 ENSMUSG00000109363 ENSMUST00000207911 Gm44668 TEC Interval_128359 chr5 112761316 112761559 + 0 NA intron (ENSMUSG00000072720.9, intron 3 of 10) protein_coding-intron (ENSMUSG00000072720.9, intron 36 of 43) -31895 ENSMUSG00000098230.7 ENSMUSG00000098230 ENSMUST00000189887 1700095B10Rik antisense Interval_52562 chr14 47529168 47529468 + 0 NA TTS (ENSMUSG00000037536.14) protein_coding-TTS (ENSMUSG00000037536.14) -12662 ENSMUSG00000115823.1 ENSMUSG00000115823 ENSMUST00000228568 Gm49004 antisense Interval_44127 chr13 41057993 41058519 + 0 NA intron (ENSMUSG00000021363.14, intron 2 of 11) protein_coding-intron (ENSMUSG00000021363.14, intron 1 of 12) -18485 ENSMUSG00000021363.14 ENSMUSG00000021363 ENSMUST00000224423 Mak protein_coding Interval_81955 chr18 66375243 66375432 + 0 NA Intergenic Intergenic -18960 ENSMUSG00000117680.1 ENSMUSG00000117680 ENSMUST00000236388 Gm50148 processed_pseudogene Interval_35800 chr12 30039431 30040724 + 0 NA Intergenic Intergenic -19580 ENSMUSG00000085472.1 ENSMUSG00000085472 ENSMUST00000138626 Gm15691 antisense Interval_141724 chr6 134046010 134047705 + 0 NA intron (ENSMUSG00000030199.16, intron 1 of 4) protein_coding-intron (ENSMUSG00000030199.16, intron 1 of 7) -26497 ENSMUSG00000108214.1 ENSMUSG00000108214 ENSMUST00000204995 Gm43982 TEC Interval_87807 chr19 56062407 56062808 + 0 NA Intergenic Intergenic 27511 ENSMUSG00000117827.1 ENSMUSG00000117827 ENSMUST00000236136 D730002M21Rik lincRNA Interval_160904 chr8 114845632 114846295 + 0 NA intron (ENSMUSG00000004637.15, intron 8 of 8) protein_coding-intron (ENSMUSG00000004637.15, intron 8 of 8) 133796 ENSMUSG00000004637.15 ENSMUSG00000004637 ENSMUST00000162052 Wwox protein_coding Interval_63092 chr15 99026471 99027084 + 0 NA Intergenic Intergenic -3544 ENSMUSG00000043091.9 ENSMUSG00000043091 ENSMUST00000230447 Tuba1c protein_coding Interval_112130 chr4 34872606 34873709 + 0 NA intron (ENSMUSG00000039967.14, intron 1 of 7) protein_coding-intron (ENSMUSG00000039967.14, intron 1 of 7) 9773 ENSMUSG00000039967.14 ENSMUSG00000039967 ENSMUST00000047950 Zfp292 protein_coding Interval_148985 chr7 90750108 90751170 + 0 NA intron (ENSMUSG00000052572.19, intron 4 of 27) protein_coding-intron (ENSMUSG00000052572.19, intron 4 of 27) 61522 ENSMUSG00000109074.1 ENSMUSG00000109074 ENSMUST00000209013 Gm45162 processed_pseudogene Interval_174413 chrX 151833743 151833920 + 0 NA intron (ENSMUSG00000025261.18, intron 4 of 4) protein_coding-intron (ENSMUSG00000025261.18, intron 2 of 82) -22975 ENSMUSG00000025261.18 ENSMUSG00000025261 ENSMUST00000139245 Huwe1 protein_coding Interval_4895 chr1 81649784 81650407 + 0 NA Intergenic Intergenic -92612 ENSMUSG00000101986.1 ENSMUSG00000101986 ENSMUST00000191337 Gm6198 processed_pseudogene Interval_111004 chr4 11146662 11147733 + 0 NA Intergenic Intergenic 2487 ENSMUSG00000081490.1 ENSMUSG00000081490 ENSMUST00000120175 Gm11830 processed_pseudogene Interval_21676 chr11 3628739 3629717 + 0 NA exon (ENSMUSG00000084310.1, exon 1 of 1) processed_pseudogene-exon (ENSMUSG00000084310.1, exon 1 of 1) 404 ENSMUSG00000084310.1 ENSMUSG00000084310 ENSMUST00000121615 Gm11950 processed_pseudogene Interval_148801 chr7 88047073 88047910 + 0 NA intron (ENSMUSG00000049583.15, intron 6 of 8) protein_coding-intron (ENSMUSG00000049583.15, intron 6 of 7) -15570 ENSMUSG00000109461.1 ENSMUSG00000109461 ENSMUST00000207808 Gm44848 TEC Interval_113299 chr4 53238618 53238921 + 0 NA Intergenic Intergenic -7427 ENSMUSG00000086947.1 ENSMUSG00000086947 ENSMUST00000155178 4930522O17Rik antisense Interval_67107 chr16 43160535 43160782 + 0 NA intron (ENSMUSG00000022708.16, intron 4 of 7) protein_coding-intron (ENSMUSG00000022708.16, intron 5 of 14) -23915 ENSMUSG00000083827.1 ENSMUSG00000083827 ENSMUST00000120369 Gm15712 processed_pseudogene Interval_5165 chr1 86163678 86164542 + 0 NA intron (ENSMUSG00000062590.13, intron 4 of 18) protein_coding-intron (ENSMUSG00000062590.13, intron 4 of 24) 9311 ENSMUSG00000062590.13 ENSMUSG00000062590 ENSMUST00000126579 Armc9 protein_coding Interval_55336 chr14 83659354 83659599 + 0 NA Intergenic Intergenic -93172 ENSMUSG00000115780.1 ENSMUSG00000115780 ENSMUST00000226600 Gm49053 processed_pseudogene Interval_30622 chr11 95524865 95525054 + 0 NA Intergenic Intergenic -10389 ENSMUSG00000046719.7 ENSMUSG00000046719 ENSMUST00000058866 Nxph3 protein_coding Interval_163239 chr9 19092930 19094342 + 0 NA Intergenic Intergenic -26959 ENSMUSG00000059303.6 ENSMUSG00000059303 ENSMUST00000074986 Olfr836 protein_coding Interval_90866 chr2 33074563 33075612 + 0 NA intron (ENSMUSG00000038860.15, intron 1 of 17) protein_coding-intron (ENSMUSG00000038860.15, intron 1 of 27) -40303 ENSMUSG00000038860.15 ENSMUSG00000038860 ENSMUST00000124000 Garnl3 protein_coding Interval_37297 chr12 64928731 64929178 + 0 NA Intergenic Intergenic 8170 ENSMUSG00000047227.5 ENSMUSG00000047227 ENSMUST00000220928 Gm527 protein_coding Interval_117780 chr4 126190662 126190890 + 0 NA intron (ENSMUSG00000043962.16, intron 1 of 2) protein_coding-intron (ENSMUSG00000043962.16, intron 1 of 10) 10501 ENSMUSG00000084504.1 ENSMUSG00000084504 ENSMUST00000122555 Gm25323 snRNA Interval_58662 chr15 36883091 36883550 + 0 NA Intergenic Intergenic -3504 ENSMUSG00000072618.2 ENSMUSG00000072618 ENSMUST00000100713 Gm10384 lincRNA Interval_103779 chr3 52711192 52711983 + 0 NA Intergenic Intergenic 11168 ENSMUSG00000065926.1 ENSMUSG00000065926 ENSMUST00000083992 Gm22798 snRNA Interval_88603 chr2 6547012 6547828 + 0 NA intron (ENSMUSG00000002107.18, intron 12 of 13) protein_coding-intron (ENSMUSG00000002107.18, intron 14 of 15) 67730 ENSMUSG00000102599.1 ENSMUSG00000102599 ENSMUST00000194293 Gm38386 TEC Interval_32690 chr11 109684092 109684481 + 0 NA intron (ENSMUSG00000020614.13, intron 3 of 11) protein_coding-intron (ENSMUSG00000020614.13, intron 3 of 10) 18342 ENSMUSG00000020612.16 ENSMUSG00000020612 ENSMUST00000155532 Prkar1a protein_coding Interval_41190 chr12 111704342 111705702 + 0 NA exon (ENSMUSG00000112991.1, exon 3 of 3) lincRNA-exon (ENSMUSG00000112991.1, exon 3 of 3) 1940 ENSMUSG00000112991.1 ENSMUSG00000112991 ENSMUST00000221152 Gm36635 lincRNA Interval_55421 chr14 87074618 87075480 + 0 NA TTS (ENSMUSG00000022021.14) protein_coding-TTS (ENSMUSG00000022021.14) 66186 ENSMUSG00000022021.14 ENSMUSG00000022021 ENSMUST00000226134 Diaph3 protein_coding Interval_159479 chr8 94976462 94977513 + 0 NA promoter-TSS (ENSMUSG00000031785.16) protein_coding-promoter-TSS (ENSMUSG00000031785.16) -7233 ENSMUSG00000070111.4 ENSMUSG00000070111 ENSMUST00000093603 Gm10286 TEC Interval_51540 chr14 29990868 29991209 + 0 NA promoter-TSS (ENSMUSG00000015971.5) protein_coding-promoter-TSS (ENSMUSG00000015971.5) 2150 ENSMUSG00000104926.1 ENSMUSG00000104926 ENSMUST00000198991 Mir6947 miRNA Interval_147292 chr7 65526874 65528182 + 0 NA intron (ENSMUSG00000030516.14, intron 1 of 1) protein_coding-intron (ENSMUSG00000030516.14, intron 1 of 4) -46307 ENSMUSG00000108533.1 ENSMUSG00000108533 ENSMUST00000207008 Gm44792 TEC Interval_168381 chr9 79849923 79850308 + 0 NA intron (ENSMUSG00000034898.17, intron 4 of 6) protein_coding-intron (ENSMUSG00000034898.17, intron 4 of 5) -11728 ENSMUSG00000092565.1 ENSMUSG00000092565 ENSMUST00000174028 Gm20477 processed_pseudogene Interval_127129 chr5 100476216 100477296 + 0 NA intron (ENSMUSG00000035310.15, intron 2 of 10) protein_coding-intron (ENSMUSG00000035310.15, intron 3 of 12) 21877 ENSMUSG00000035310.15 ENSMUSG00000035310 ENSMUST00000144716 Lin54 protein_coding Interval_30136 chr11 89610905 89612068 + 0 NA intron (ENSMUSG00000047773.15, intron 4 of 21) protein_coding-intron (ENSMUSG00000047773.15, intron 2 of 16) 229780 ENSMUSG00000047773.15 ENSMUSG00000047773 ENSMUST00000207171 Ankfn1 protein_coding Interval_149250 chr7 96672229 96673117 + 0 NA intron (ENSMUSG00000048078.16, intron 1 of 4) protein_coding-intron (ENSMUSG00000048078.16, intron 7 of 32) -43604 ENSMUSG00000085792.2 ENSMUSG00000085792 ENSMUST00000155217 Gm15414 antisense Interval_106449 chr3 96416658 96416987 + 0 NA Intergenic Intergenic -1963 ENSMUSG00000064796.1 ENSMUSG00000064796 ENSMUST00000082862 Terc misc_RNA Interval_152276 chr7 131312835 131313305 + 0 NA intron (ENSMUSG00000040205.8, intron 6 of 8) protein_coding-intron (ENSMUSG00000040205.8, intron 6 of 8) 9222 ENSMUSG00000040205.8 ENSMUSG00000040205 ENSMUST00000046611 Cuzd1 protein_coding Interval_63152 chr15 99411487 99412230 + 0 NA Intergenic Intergenic -1616 ENSMUSG00000116039.1 ENSMUSG00000116039 ENSMUST00000231179 Gm49483 processed_pseudogene Interval_166482 chr9 59956621 59956915 + 0 NA TTS (ENSMUSG00000084847.7) lincRNA-TTS (ENSMUSG00000084847.7) 5003 ENSMUSG00000084847.7 ENSMUSG00000084847 ENSMUST00000133523 Gm15507 lincRNA Interval_138957 chr6 93818387 93820196 + 0 NA intron (ENSMUSG00000045095.16, intron 2 of 24) protein_coding-intron (ENSMUSG00000045095.16, intron 2 of 21) 25519 ENSMUSG00000088627.1 ENSMUSG00000088627 ENSMUST00000158002 Gm23035 snRNA Interval_28506 chr11 76386879 76388387 + 0 NA intron (ENSMUSG00000020844.6, intron 1 of 1) protein_coding-intron (ENSMUSG00000020844.6, intron 1 of 7) 11435 ENSMUSG00000020844.6 ENSMUSG00000020844 ENSMUST00000131472 Nxn protein_coding Interval_29471 chr11 84204081 84204948 + 0 NA intron (ENSMUSG00000020532.18, intron 2 of 8) protein_coding-intron (ENSMUSG00000020532.18, intron 1 of 53) 14921 ENSMUSG00000103122.1 ENSMUSG00000103122 ENSMUST00000194891 Gm37391 TEC Interval_119928 chr4 140981535 140981877 + 0 NA Intergenic Intergenic -19005 ENSMUSG00000036622.15 ENSMUSG00000036622 ENSMUST00000137630 Atp13a2 protein_coding Interval_83416 chr18 84994177 84994484 + 0 NA Intergenic Intergenic 19005 ENSMUSG00000118255.1 ENSMUSG00000118255 ENSMUST00000238005 Gm50369 processed_pseudogene Interval_164015 chr9 30920798 30922996 + 0 NA promoter-TSS (ENSMUSG00000033453.8) protein_coding-promoter-TSS (ENSMUSG00000033453.8) -12240 ENSMUSG00000033453.8 ENSMUSG00000033453 ENSMUST00000216215 Adamts15 protein_coding Interval_29267 chr11 82471023 82471713 + 0 NA Intergenic Intergenic 33111 ENSMUSG00000020701.12 ENSMUSG00000020701 ENSMUST00000202598 Tmem132e protein_coding Interval_43754 chr13 36097231 36097490 + 0 NA intron (ENSMUSG00000046573.7, intron 1 of 2) protein_coding-intron (ENSMUSG00000046573.7, intron 1 of 2) 20166 ENSMUSG00000046573.7 ENSMUSG00000046573 ENSMUST00000053265 Lyrm4 protein_coding Interval_89027 chr2 14726202 14727809 + 0 NA intron (ENSMUSG00000104106.1, intron 1 of 2) protein_coding-intron (ENSMUSG00000057914.15, intron 2 of 13) 5871 ENSMUSG00000083305.2 ENSMUSG00000083305 ENSMUST00000120376 Gm13315 processed_pseudogene Interval_3965 chr1 65126182 65126490 + 0 NA Intergenic Intergenic -3222 ENSMUSG00000044816.10 ENSMUSG00000044816 ENSMUST00000153330 D630023F18Rik protein_coding Interval_36331 chr12 41385739 41387885 + 0 NA exon (ENSMUSG00000113454.1, exon 2 of 2) antisense-exon (ENSMUSG00000113454.1, exon 2 of 2) 4404 ENSMUSG00000113454.1 ENSMUSG00000113454 ENSMUST00000221495 Gm47373 antisense Interval_39277 chr12 86421153 86423207 + 0 NA intron (ENSMUSG00000021255.17, intron 1 of 6) protein_coding-intron (ENSMUSG00000021255.17, intron 1 of 6) -47937 ENSMUSG00000021255.17 ENSMUSG00000021255 ENSMUST00000136464 Esrrb protein_coding Interval_120834 chr4 150914132 150915068 + 0 NA promoter-TSS (ENSMUSG00000028964.14) protein_coding-promoter-TSS (ENSMUSG00000028964.14) -4772 ENSMUSG00000028964.14 ENSMUSG00000028964 ENSMUST00000146184 Park7 protein_coding Interval_9753 chr1 161766141 161766838 + 0 NA Intergenic Intergenic 20433 ENSMUSG00000102399.1 ENSMUSG00000102399 ENSMUST00000195878 Gm5049 processed_pseudogene Interval_112228 chr4 36987362 36987717 + 0 NA exon (ENSMUSG00000084898.1, exon 2 of 2) lincRNA-exon (ENSMUSG00000084898.1, exon 2 of 2) 34573 ENSMUSG00000084898.1 ENSMUSG00000084898 ENSMUST00000144029 Gm12371 lincRNA Interval_111252 chr4 16013469 16014435 + 0 NA promoter-TSS (ENSMUSG00000041153.9) protein_coding-promoter-TSS (ENSMUSG00000041153.9) -156 ENSMUSG00000041153.9 ENSMUSG00000041153 ENSMUST00000124770 Osgin2 protein_coding Interval_23894 chr11 27833384 27833674 + 0 NA Intergenic Intergenic -49583 ENSMUSG00000084064.1 ENSMUSG00000084064 ENSMUST00000112483 Gm12079 processed_pseudogene Interval_72291 chr17 29002322 29003229 + 0 NA intron (ENSMUSG00000024006.17, intron 1 of 7) protein_coding-intron (ENSMUSG00000024006.17, intron 1 of 13) -11392 ENSMUSG00000024006.17 ENSMUSG00000024006 ENSMUST00000233723 Stk38 protein_coding Interval_23171 chr11 20312463 20312824 + 0 NA intron (ENSMUSG00000020142.12, intron 4 of 7) protein_coding-intron (ENSMUSG00000020142.12, intron 4 of 7) 20070 ENSMUSG00000020142.12 ENSMUSG00000020142 ENSMUST00000004634 Slc1a4 protein_coding Interval_135877 chr6 48109213 48109423 + 0 NA Intergenic Intergenic -27040 ENSMUSG00000057691.8 ENSMUSG00000057691 ENSMUST00000203994 Zfp746 protein_coding Interval_136677 chr6 57534649 57536267 + 0 NA promoter-TSS (ENSMUSG00000037826.5) protein_coding-promoter-TSS (ENSMUSG00000037826.5) -19851 ENSMUSG00000037826.5 ENSMUSG00000037826 ENSMUST00000203713 Ppm1k protein_coding Interval_6103 chr1 97002412 97002670 + 0 NA exon (ENSMUSG00000097480.1, exon 1 of 1) processed_pseudogene-exon (ENSMUSG00000097480.1, exon 1 of 1) 242 ENSMUSG00000097480.1 ENSMUSG00000097480 ENSMUST00000180888 Gm9499 processed_pseudogene Interval_92369 chr2 59307452 59308841 + 0 NA TTS (ENSMUSG00000026991.20) protein_coding-TTS (ENSMUSG00000026991.20) 79325 ENSMUSG00000087455.7 ENSMUSG00000087455 ENSMUST00000155111 5330411J11Rik processed_transcript Interval_63275 chr15 100046025 100046311 + 0 NA intron (ENSMUSG00000023026.16, intron 1 of 37) protein_coding-intron (ENSMUSG00000023026.16, intron 1 of 37) 45589 ENSMUSG00000116021.1 ENSMUSG00000116021 ENSMUST00000230449 Gm49474 TEC Interval_160597 chr8 110930739 110932195 + 0 NA promoter-TSS (ENSMUSG00000031749.12) protein_coding-promoter-TSS (ENSMUSG00000031749.12) -454 ENSMUSG00000031749.12 ENSMUSG00000031749 ENSMUST00000138332 St3gal2 protein_coding Interval_165419 chr9 47691340 47691832 + 0 NA intron (ENSMUSG00000032076.20, intron 1 of 8) protein_coding-intron (ENSMUSG00000032076.20, intron 1 of 8) -79555 ENSMUSG00000110959.1 ENSMUSG00000110959 ENSMUST00000214736 Gm47198 TEC Interval_104938 chr3 79159869 79160413 + 0 NA intron (ENSMUSG00000062232.14, intron 3 of 4) protein_coding-intron (ENSMUSG00000062232.14, intron 3 of 3) -36233 ENSMUSG00000064693.1 ENSMUSG00000064693 ENSMUST00000082759 Gm24150 snRNA Interval_45675 chr13 56772423 56772779 + 0 NA TTS (ENSMUSG00000021541.14) protein_coding-TTS (ENSMUSG00000021541.14) -18774 ENSMUSG00000110086.1 ENSMUSG00000110086 ENSMUST00000210744 Gm45623 protein_coding Interval_77802 chr18 3769627 3769990 + 0 NA TTS (ENSMUSG00000088480.1) snRNA-TTS (ENSMUSG00000088480.1) 996 ENSMUSG00000088480.1 ENSMUSG00000088480 ENSMUST00000157855 Gm23643 snRNA Interval_57683 chr15 15240383 15240644 + 0 NA Intergenic Intergenic 84682 ENSMUSG00000114972.1 ENSMUSG00000114972 ENSMUST00000226279 Gm49119 processed_pseudogene Interval_125449 chr5 67238091 67238373 + 0 NA Intergenic Intergenic -22522 ENSMUSG00000037720.16 ENSMUSG00000037720 ENSMUST00000163028 Tmem33 protein_coding Interval_97548 chr2 139722115 139722932 + 0 NA intron (ENSMUSG00000074766.10, intron 1 of 5) protein_coding-intron (ENSMUSG00000074766.10, intron 1 of 5) 44345 ENSMUSG00000074766.10 ENSMUSG00000074766 ENSMUST00000099307 Ism1 protein_coding Interval_19856 chr10 110527250 110527436 + 0 NA Intergenic Intergenic 46706 ENSMUSG00000111948.1 ENSMUSG00000111948 ENSMUST00000218914 Gm47055 processed_pseudogene Interval_140942 chr6 122897632 122898076 + 0 NA Intergenic Intergenic 4962 ENSMUSG00000049249.2 ENSMUSG00000049249 ENSMUST00000050391 Gm5316 transcribed_processed_pseudogene Interval_76216 chr17 77552525 77552746 + 0 NA Intergenic Intergenic 122065 ENSMUSG00000091058.2 ENSMUSG00000091058 ENSMUST00000168236 Gm17538 processed_pseudogene Interval_100129 chr2 167220730 167222755 + 0 NA intron (ENSMUSG00000017969.13, intron 4 of 9) protein_coding-intron (ENSMUSG00000017969.13, intron 4 of 9) -13326 ENSMUSG00000017969.13 ENSMUSG00000017969 ENSMUST00000136271 Ptgis protein_coding Interval_12248 chr1 191101907 191102159 + 0 NA intron (ENSMUSG00000026630.9, intron 2 of 2) protein_coding-intron (ENSMUSG00000026630.9, intron 2 of 2) 4186 ENSMUSG00000026630.9 ENSMUSG00000026630 ENSMUST00000191621 Batf3 protein_coding Interval_42107 chr13 8847607 8848285 + 0 NA promoter-TSS (ENSMUSG00000021147.17) protein_coding-promoter-TSS (ENSMUSG00000021147.17) -1241 ENSMUSG00000021147.17 ENSMUSG00000021147 ENSMUST00000177404 Wdr37 protein_coding Interval_157779 chr8 73034015 73034286 + 0 NA intron (ENSMUSG00000004383.18, intron 7 of 15) protein_coding-intron (ENSMUSG00000004383.18, intron 6 of 14) 17638 ENSMUSG00000093140.1 ENSMUSG00000093140 ENSMUST00000175399 Mir28b miRNA Interval_26269 chr11 55538258 55538650 + 0 NA intron (ENSMUSG00000000263.15, intron 2 of 7) protein_coding-intron (ENSMUSG00000000263.15, intron 3 of 8) -16486 ENSMUSG00000083363.1 ENSMUSG00000083363 ENSMUST00000120158 Gm12237 processed_pseudogene Interval_21705 chr11 3817895 3819104 + 0 NA intron (ENSMUSG00000020435.17, intron 2 of 2) protein_coding-intron (ENSMUSG00000020435.17, intron 2 of 13) 29607 ENSMUSG00000088352.1 ENSMUSG00000088352 ENSMUST00000157727 Gm24013 snoRNA Interval_43197 chr13 25086877 25087068 + 0 NA intron (ENSMUSG00000035910.15, intron 2 of 9) protein_coding-intron (ENSMUSG00000035910.15, intron 2 of 7) 44092 ENSMUSG00000082667.1 ENSMUSG00000082667 ENSMUST00000118813 Gm11348 processed_pseudogene Interval_114574 chr4 82600709 82601283 + 0 NA intron (ENSMUSG00000008575.17, intron 1 of 1) protein_coding-intron (ENSMUSG00000008575.17, intron 1 of 1) -13677 ENSMUSG00000084851.1 ENSMUSG00000084851 ENSMUST00000137477 Gm11267 sense_intronic Interval_29206 chr11 81531684 81532391 + 0 NA intron (ENSMUSG00000020704.13, intron 1 of 9) protein_coding-intron (ENSMUSG00000020704.13, intron 1 of 9) 41436 ENSMUSG00000080980.1 ENSMUSG00000080980 ENSMUST00000117522 1700071K01Rik processed_pseudogene Interval_94504 chr2 91722511 91722752 + 0 NA Intergenic Intergenic -5212 ENSMUSG00000082457.1 ENSMUSG00000082457 ENSMUST00000122236 Gm13776 processed_pseudogene Interval_59223 chr15 49094056 49094781 + 0 NA Intergenic Intergenic 36546 ENSMUSG00000114976.1 ENSMUSG00000114976 ENSMUST00000227927 Gm2333 processed_pseudogene Interval_35631 chr12 26314781 26315205 + 0 NA intron (ENSMUSG00000020642.13, intron 7 of 8) protein_coding-intron (ENSMUSG00000020642.13, intron 8 of 9) -4715 ENSMUSG00000020642.13 ENSMUSG00000020642 ENSMUST00000221994 Rnf144a protein_coding Interval_70411 chr17 9904165 9904422 + 0 NA Intergenic Intergenic 25474 ENSMUSG00000117227.1 ENSMUSG00000117227 ENSMUST00000232911 Gm34799 lincRNA Interval_150972 chr7 117021872 117022085 + 0 NA Intergenic Intergenic -69283 ENSMUSG00000064971.1 ENSMUSG00000064971 ENSMUST00000083037 Gm26054 snRNA Interval_121639 chr5 4120520 4121225 + 0 NA Intergenic Intergenic -16451 ENSMUSG00000001467.5 ENSMUSG00000001467 ENSMUST00000199909 Cyp51 protein_coding Interval_147303 chr7 65692916 65694120 + 0 NA promoter-TSS (ENSMUSG00000078681.10) protein_coding-promoter-TSS (ENSMUSG00000078681.10) 42 ENSMUSG00000078681.10 ENSMUSG00000078681 ENSMUST00000206361 Tm2d3 protein_coding Interval_163977 chr9 30149817 30150357 + 0 NA Intergenic Intergenic -17488 ENSMUSG00000111304.1 ENSMUSG00000111304 ENSMUST00000217527 Gm47677 lincRNA Interval_169344 chr9 96536547 96539247 + 0 NA TTS (ENSMUSG00000101615.1) processed_pseudogene-TTS (ENSMUSG00000101615.1) 736 ENSMUSG00000101615.1 ENSMUSG00000101615 ENSMUST00000188740 Gm8495 processed_pseudogene Interval_84197 chr19 8701928 8703843 + 0 NA Intergenic Intergenic 20313 ENSMUSG00000010095.13 ENSMUSG00000010095 ENSMUST00000205538 Slc3a2 protein_coding Interval_172400 chrX 17725275 17725964 + 0 NA Intergenic Intergenic -49335 ENSMUSG00000081614.1 ENSMUSG00000081614 ENSMUST00000120949 Gm9436 processed_pseudogene Interval_89224 chr2 18185292 18185699 + 0 NA intron (ENSMUSG00000026743.16, intron 2 of 3) protein_coding-intron (ENSMUSG00000026743.16, intron 13 of 22) -6053 ENSMUSG00000081619.1 ENSMUSG00000081619 ENSMUST00000118087 Gm13351 processed_pseudogene Interval_100730 chr2 172179345 172180102 + 0 NA Intergenic Intergenic 2941 ENSMUSG00000105205.1 ENSMUSG00000105205 ENSMUST00000200362 Gm44301 miRNA Interval_98514 chr2 152911280 152911624 + 0 NA promoter-TSS (ENSMUSG00000027470.9) protein_coding-promoter-TSS (ENSMUSG00000027470.9) 100 ENSMUSG00000027470.9 ENSMUSG00000027470 ENSMUST00000028970 Mylk2 protein_coding Interval_120292 chr4 145229799 145229989 + 0 NA intron (ENSMUSG00000028599.10, intron 1 of 3) protein_coding-intron (ENSMUSG00000028599.10, intron 1 of 9) 16976 ENSMUSG00000028599.10 ENSMUSG00000028599 ENSMUST00000143055 Tnfrsf1b protein_coding Interval_23187 chr11 20410602 20410860 + 0 NA Intergenic Intergenic -35681 ENSMUSG00000083878.3 ENSMUSG00000083878 ENSMUST00000119032 Gm12034 processed_pseudogene Interval_149983 chr7 104206443 104206770 + 0 NA exon (ENSMUSG00000081859.3, exon 2 of 2) polymorphic_pseudogene-exon (ENSMUSG00000081859.3, exon 2 of 2) 3169 ENSMUSG00000081859.3 ENSMUSG00000081859 ENSMUST00000121432 Olfr650-ps1 polymorphic_pseudogene Interval_97549 chr2 139725265 139725729 + 0 NA intron (ENSMUSG00000074766.10, intron 1 of 5) protein_coding-intron (ENSMUSG00000074766.10, intron 1 of 5) 47319 ENSMUSG00000074766.10 ENSMUSG00000074766 ENSMUST00000099307 Ism1 protein_coding Interval_149527 chr7 99351265 99353433 + 0 NA intron (ENSMUSG00000070436.12, intron 1 of 5) protein_coding-intron (ENSMUSG00000070436.12, intron 1 of 4) 754 ENSMUSG00000070436.12 ENSMUSG00000070436 ENSMUST00000208292 Serpinh1 protein_coding Interval_152695 chr7 136430151 136431248 + 0 NA Intergenic Intergenic 77335 ENSMUSG00000109981.1 ENSMUSG00000109981 ENSMUST00000210345 Gm36849 lincRNA Interval_89580 chr2 22957014 22958352 + 0 NA intron (ENSMUSG00000058835.14, intron 6 of 10) protein_coding-intron (ENSMUSG00000058835.14, intron 6 of 9) -43851 ENSMUSG00000081861.1 ENSMUSG00000081861 ENSMUST00000121960 Gm14441 processed_pseudogene Interval_72873 chr17 32838909 32840198 + 0 NA Intergenic Intergenic -1760 ENSMUSG00000117347.1 ENSMUSG00000117347 ENSMUST00000234431 Gm18272 unprocessed_pseudogene Interval_76951 chr17 85123190 85123418 + 0 NA intron (ENSMUSG00000071037.6, intron 3 of 10) protein_coding-intron (ENSMUSG00000071037.6, intron 3 of 10) 32698 ENSMUSG00000071037.6 ENSMUSG00000071037 ENSMUST00000234501 Camkmt protein_coding Interval_132390 chr5 144658610 144659328 + 0 NA Intergenic Intergenic 64828 ENSMUSG00000082524.3 ENSMUSG00000082524 ENSMUST00000121256 Gm6272 processed_pseudogene Interval_27373 chr11 67049249 67049469 + 0 NA intron (ENSMUSG00000020910.16, intron 1 of 2) protein_coding-intron (ENSMUSG00000020910.16, intron 2 of 4) 3232 ENSMUSG00000020910.16 ENSMUSG00000020910 ENSMUST00000146648 Adprm protein_coding Interval_165431 chr9 47838824 47840195 + 0 NA intron (ENSMUSG00000032076.20, intron 10 of 11) protein_coding-intron (ENSMUSG00000032076.20, intron 7 of 8) -62772 ENSMUSG00000111155.1 ENSMUSG00000111155 ENSMUST00000216522 Gm47197 TEC Interval_14793 chr10 39967158 39967938 + 0 NA TTS (ENSMUSG00000038528.15) protein_coding-TTS (ENSMUSG00000038528.15) -7458 ENSMUSG00000071335.5 ENSMUSG00000071335 ENSMUST00000239163 Mfsd4b3-ps transcribed_unprocessed_pseudogene Interval_32999 chr11 113591489 113592146 + 0 NA exon (ENSMUSG00000041654.15, exon 2 of 3) protein_coding-exon (ENSMUSG00000041654.15, exon 2 of 3) -26038 ENSMUSG00000041654.15 ENSMUSG00000041654 ENSMUST00000123153 Slc39a11 protein_coding Interval_80015 chr18 36655895 36656135 + 0 NA intron (ENSMUSG00000024483.19, intron 1 of 3) protein_coding-intron (ENSMUSG00000024483.19, intron 31 of 33) -8045 ENSMUSG00000090264.1 ENSMUSG00000090264 ENSMUST00000036765 Eif4ebp3 protein_coding Interval_155466 chr8 33764305 33765109 + 0 NA promoter-TSS (ENSMUSG00000031585.13) protein_coding-promoter-TSS (ENSMUSG00000031585.13) -16937 ENSMUSG00000094500.2 ENSMUSG00000094500 ENSMUST00000179364 Smim18 protein_coding Interval_88162 chr19 60144454 60144811 + 0 NA promoter-TSS (ENSMUSG00000053117.11) lincRNA-promoter-TSS (ENSMUSG00000053117.11) -6895 ENSMUSG00000053117.11 ENSMUSG00000053117 ENSMUST00000235893 E330013P04Rik lincRNA Interval_43090 chr13 23778207 23779521 + 0 NA intron (ENSMUSG00000064140.3, intron 3 of 9) protein_coding-intron (ENSMUSG00000064140.3, intron 3 of 9) 8951 ENSMUSG00000064140.3 ENSMUSG00000064140 ENSMUST00000074067 Trim38 protein_coding Interval_13197 chr10 12988095 12988836 + 0 NA Intergenic Intergenic -16878 ENSMUSG00000078348.4 ENSMUSG00000078348 ENSMUST00000105139 Sf3b5 protein_coding Interval_146476 chr7 46218145 46220675 + 0 NA exon (ENSMUSG00000030838.20, exon 14 of 27) protein_coding-exon (ENSMUSG00000030838.20, exon 14 of 27) 11173 ENSMUSG00000030838.20 ENSMUSG00000030838 ENSMUST00000238793 Ush1c protein_coding Interval_131744 chr5 139599281 139600437 + 0 NA Intergenic Intergenic 55961 ENSMUSG00000029546.12 ENSMUSG00000029546 ENSMUST00000174792 Uncx protein_coding Interval_56658 chr14 121218672 121219843 + 0 NA intron (ENSMUSG00000025555.14, intron 2 of 7) protein_coding-intron (ENSMUSG00000025555.14, intron 3 of 26) -29449 ENSMUSG00000085133.2 ENSMUSG00000085133 ENSMUST00000130256 B930095G15Rik sense_intronic Interval_27497 chr11 68247916 68248236 + 0 NA intron (ENSMUSG00000020902.12, intron 6 of 7) protein_coding-intron (ENSMUSG00000020902.12, intron 5 of 6) 22803 ENSMUSG00000084993.1 ENSMUSG00000084993 ENSMUST00000151817 Gm12305 sense_intronic Interval_5578 chr1 89935753 89936450 + 0 NA Intergenic Intergenic 5840 ENSMUSG00000092627.2 ENSMUSG00000092627 ENSMUST00000189763 D130058E05Rik processed_transcript Interval_82440 chr18 74005944 74006244 + 0 NA intron (ENSMUSG00000024558.12, intron 1 of 1) protein_coding-intron (ENSMUSG00000024558.12, intron 1 of 5) -11813 ENSMUSG00000090263.1 ENSMUSG00000090263 ENSMUST00000159260 D730045A05Rik lincRNA Interval_37046 chr12 56845711 56846081 + 0 NA intron (ENSMUSG00000035472.14, intron 4 of 10) protein_coding-intron (ENSMUSG00000035472.14, intron 3 of 9) -152932 ENSMUSG00000089894.2 ENSMUSG00000089894 ENSMUST00000159874 Gm15524 antisense Interval_107622 chr3 108939891 108941093 + 0 NA promoter-TSS (ENSMUSG00000051638.2) antisense-promoter-TSS (ENSMUSG00000051638.2) -46 ENSMUSG00000051638.2 ENSMUSG00000051638 ENSMUST00000050914 Gm9857 antisense Interval_174305 chrX 144294265 144294538 + 0 NA Intergenic Intergenic -3389 ENSMUSG00000076117.1 ENSMUSG00000076117 ENSMUST00000102163 Mir680-2 miRNA Interval_11232 chr1 180347784 180348110 + 0 NA intron (ENSMUSG00000038855.10, intron 2 of 7) protein_coding-intron (ENSMUSG00000038855.10, intron 2 of 7) -9702 ENSMUSG00000104388.1 ENSMUSG00000104388 ENSMUST00000193199 Gm37033 TEC Interval_4342 chr1 72826776 72828363 + 0 NA intron (ENSMUSG00000039323.18, intron 1 of 3) protein_coding-intron (ENSMUSG00000039323.18, intron 1 of 3) -21130 ENSMUSG00000039323.18 ENSMUSG00000039323 ENSMUST00000155703 Igfbp2 protein_coding Interval_123642 chr5 34210012 34210956 + 0 NA intron (ENSMUSG00000037224.15, intron 8 of 12) protein_coding-intron (ENSMUSG00000037224.15, intron 8 of 12) 3318 ENSMUSG00000086291.1 ENSMUSG00000086291 ENSMUST00000140646 Gm15513 sense_intronic Interval_109575 chr3 144569278 144571042 + 0 NA promoter-TSS (ENSMUSG00000040151.9) protein_coding-promoter-TSS (ENSMUSG00000040151.9) -2 ENSMUSG00000040151.9 ENSMUSG00000040151 ENSMUST00000199680 Hs2st1 protein_coding Interval_164809 chr9 42097402 42098530 + 0 NA intron (ENSMUSG00000049313.8, intron 3 of 47) protein_coding-intron (ENSMUSG00000049313.8, intron 3 of 47) -44395 ENSMUSG00000111167.1 ENSMUSG00000111167 ENSMUST00000217090 Gm39321 lincRNA Interval_80034 chr18 36775902 36776778 + 0 NA intron (ENSMUSG00000001380.7, intron 2 of 3) protein_coding-intron (ENSMUSG00000001380.7, intron 2 of 12) 6780 ENSMUSG00000001380.7 ENSMUSG00000001380 ENSMUST00000235863 Hars protein_coding Interval_59814 chr15 59524236 59524561 + 0 NA intron (ENSMUSG00000059586.10, intron 5 of 7) protein_coding-intron (ENSMUSG00000059586.10, intron 4 of 6) -94192 ENSMUSG00000115896.1 ENSMUSG00000115896 ENSMUST00000229684 Gm36677 lincRNA Interval_136633 chr6 56837063 56838027 + 0 NA intron (ENSMUSG00000029781.7, intron 1 of 9) protein_coding-intron (ENSMUSG00000029781.7, intron 1 of 9) -11788 ENSMUSG00000029781.7 ENSMUSG00000029781 ENSMUST00000147159 Fkbp9 protein_coding Interval_104649 chr3 69118449 69119272 + 0 NA TTS (ENSMUSG00000103094.1) TEC-TTS (ENSMUSG00000103094.1) 3864 ENSMUSG00000103094.1 ENSMUSG00000103094 ENSMUST00000193684 Gm37558 TEC Interval_147289 chr7 65506527 65507187 + 0 NA intron (ENSMUSG00000030516.14, intron 2 of 4) protein_coding-intron (ENSMUSG00000030516.14, intron 2 of 4) -25636 ENSMUSG00000108533.1 ENSMUSG00000108533 ENSMUST00000207008 Gm44792 TEC Interval_155145 chr8 27042065 27043428 + 0 NA promoter-TSS (ENSMUSG00000031485.15) protein_coding-promoter-TSS (ENSMUSG00000031485.15) 296 ENSMUSG00000091154.2 ENSMUSG00000091154 ENSMUST00000163731 Proscos antisense Interval_127906 chr5 108817062 108817868 + 0 NA Intergenic Intergenic -4256 ENSMUSG00000093756.1 ENSMUSG00000093756 ENSMUST00000175733 Gm18594 processed_pseudogene Interval_83267 chr18 83192273 83193280 + 0 NA Intergenic Intergenic -84916 ENSMUSG00000100430.2 ENSMUSG00000100430 ENSMUST00000236396 1700095A13Rik lincRNA Interval_100514 chr2 169790617 169791230 + 0 NA intron (ENSMUSG00000047907.11, intron 1 of 2) protein_coding-intron (ENSMUSG00000047907.11, intron 1 of 1) -93970 ENSMUSG00000047907.11 ENSMUSG00000047907 ENSMUST00000140699 Tshz2 protein_coding Interval_38576 chr12 80216235 80217487 + 0 NA intron (ENSMUSG00000015143.15, intron 1 of 20) protein_coding-intron (ENSMUSG00000015143.15, intron 1 of 20) 7618 ENSMUSG00000112852.1 ENSMUSG00000112852 ENSMUST00000218235 Gm47767 antisense Interval_114907 chr4 86856088 86857819 + 0 NA exon (ENSMUSG00000028495.14, exon 1 of 4) protein_coding-exon (ENSMUSG00000028495.14, exon 1 of 4) 392 ENSMUSG00000028495.14 ENSMUSG00000028495 ENSMUST00000130001 Rps6 protein_coding Interval_61176 chr15 79681903 79682945 + 0 NA intron (ENSMUSG00000022426.6, intron 1 of 3) protein_coding-intron (ENSMUSG00000022426.6, intron 1 of 3) -1102 ENSMUSG00000116239.1 ENSMUSG00000116239 ENSMUST00000230256 Gm49520 processed_pseudogene Interval_58307 chr15 32160363 32160742 + 0 NA Intergenic Intergenic -16737 ENSMUSG00000045267.3 ENSMUSG00000045267 ENSMUST00000057633 Tas2r119 protein_coding Interval_67011 chr16 40079875 40080379 + 0 NA intron (ENSMUSG00000061080.11, intron 1 of 1) protein_coding-intron (ENSMUSG00000061080.11, intron 1 of 8) -47341 ENSMUSG00000102456.1 ENSMUSG00000102456 ENSMUST00000193417 Gm37508 TEC Interval_109051 chr3 135477265 135477743 + 0 NA Intergenic Intergenic -6128 ENSMUSG00000105404.1 ENSMUSG00000105404 ENSMUST00000200141 Gm42807 processed_pseudogene Interval_151359 chr7 121734118 121734986 + 0 NA promoter-TSS (ENSMUSG00000000216.8) protein_coding-promoter-TSS (ENSMUSG00000000216.8) 73 ENSMUSG00000000216.8 ENSMUSG00000000216 ENSMUST00000000221 Scnn1g protein_coding Interval_26292 chr11 55855336 55855551 + 0 NA intron (ENSMUSG00000086020.1, intron 1 of 4) antisense-intron (ENSMUSG00000086020.1, intron 1 of 4) 83355 ENSMUSG00000086020.1 ENSMUSG00000086020 ENSMUST00000134285 Gm12239 antisense Interval_107082 chr3 103392770 103394302 + 0 NA TTS (ENSMUSG00000089029.1) snoRNA-TTS (ENSMUSG00000089029.1) 603 ENSMUSG00000089029.1 ENSMUSG00000089029 ENSMUST00000158404 Gm25009 snoRNA Interval_122520 chr5 23560491 23561084 + 0 NA intron (ENSMUSG00000062604.11, intron 3 of 4) protein_coding-intron (ENSMUSG00000062604.11, intron 2 of 14) -18669 ENSMUSG00000062604.11 ENSMUSG00000062604 ENSMUST00000196592 Srpk2 protein_coding Interval_65062 chr16 18784960 18786749 + 0 NA intron (ENSMUSG00000000028.15, intron 14 of 17) protein_coding-intron (ENSMUSG00000000028.15, intron 16 of 19) 9007 ENSMUSG00000041378.2 ENSMUSG00000041378 ENSMUST00000043577 Cldn5 protein_coding Interval_171908 chr9 122378939 122379599 + 0 NA intron (ENSMUSG00000032540.16, intron 6 of 6) protein_coding-intron (ENSMUSG00000032540.16, intron 7 of 7) 19532 ENSMUSG00000093598.1 ENSMUSG00000093598 ENSMUST00000177015 A730085K08Rik antisense Interval_62430 chr15 92547293 92547690 + 0 NA intron (ENSMUSG00000036218.16, intron 1 of 2) protein_coding-intron (ENSMUSG00000036218.16, intron 3 of 9) 158464 ENSMUSG00000115858.1 ENSMUSG00000115858 ENSMUST00000230757 4930588J15Rik antisense Interval_129308 chr5 118834260 118834508 + 0 NA Intergenic Intergenic 43081 ENSMUSG00000106708.1 ENSMUSG00000106708 ENSMUST00000202790 Gm43782 lincRNA Interval_117177 chr4 120267372 120268993 + 0 NA exon (ENSMUSG00000052135.8, exon 2 of 2) protein_coding-exon (ENSMUSG00000052135.8, exon 2 of 2) 19167 ENSMUSG00000052135.8 ENSMUSG00000052135 ENSMUST00000102656 Foxo6 protein_coding Interval_93830 chr2 77289161 77290162 + 0 NA Intergenic Intergenic -1670 ENSMUSG00000081611.1 ENSMUSG00000081611 ENSMUST00000119086 Gm13651 processed_pseudogene Interval_140057 chr6 113690008 113691340 + 0 NA promoter-TSS (ENSMUSG00000060477.14) protein_coding-promoter-TSS (ENSMUSG00000060477.14) 819 ENSMUSG00000108024.1 ENSMUSG00000108024 ENSMUST00000204352 Gm43912 TEC Interval_68783 chr16 86302266 86302727 + 0 NA Intergenic Intergenic 66325 ENSMUSG00000116799.1 ENSMUSG00000116799 ENSMUST00000231827 Gm32357 lincRNA Interval_89269 chr2 18681052 18681472 + 0 NA intron (ENSMUSG00000026739.13, intron 1 of 3) protein_coding-intron (ENSMUSG00000026739.13, intron 1 of 9) 888 ENSMUSG00000026739.13 ENSMUSG00000026739 ENSMUST00000147365 Bmi1 protein_coding Interval_89218 chr2 18140561 18141090 + 0 NA intron (ENSMUSG00000026743.16, intron 3 of 4) protein_coding-intron (ENSMUSG00000026743.16, intron 8 of 22) -11248 ENSMUSG00000092814.1 ENSMUSG00000092814 ENSMUST00000175073 Gm23638 miRNA Interval_172057 chr9 124125523 124125762 + 0 NA TTS (ENSMUSG00000079227.10) protein_coding-TTS (ENSMUSG00000079227.10) -1042 ENSMUSG00000079227.10 ENSMUSG00000079227 ENSMUST00000097855 Ccr5 protein_coding Interval_17731 chr10 79797379 79797603 + 0 NA intron (ENSMUSG00000035863.14, intron 1 of 6) protein_coding-intron (ENSMUSG00000035863.14, intron 1 of 8) -2835 ENSMUSG00000112828.1 ENSMUSG00000112828 ENSMUST00000219552 Gm48495 antisense Interval_110220 chr3 154505278 154505561 + 0 NA Intergenic Intergenic 91679 ENSMUSG00000047583.9 ENSMUSG00000047583 ENSMUST00000122976 Tyw3 protein_coding Interval_65103 chr16 19275750 19276703 + 0 NA Intergenic Intergenic -15367 ENSMUSG00000076940.3 ENSMUSG00000076940 ENSMUST00000197518 Iglv2 IG_V_gene Interval_169937 chr9 103079592 103080679 + 0 NA intron (ENSMUSG00000032548.14, intron 10 of 13) protein_coding-intron (ENSMUSG00000032548.14, intron 11 of 13) 5391 ENSMUSG00000110765.1 ENSMUSG00000110765 ENSMUST00000216778 Gm47468 antisense Interval_23824 chr11 26602453 26602661 + 0 NA Intergenic Intergenic -8558 ENSMUSG00000064090.14 ENSMUSG00000064090 ENSMUST00000125545 Vrk2 protein_coding Interval_169584 chr9 99280138 99280389 + 0 NA intron (ENSMUSG00000056267.14, intron 10 of 15) protein_coding-intron (ENSMUSG00000056267.14, intron 10 of 17) -18703 ENSMUSG00000111383.1 ENSMUSG00000111383 ENSMUST00000214625 Gm18914 processed_pseudogene Interval_84411 chr19 10705256 10705621 + 0 NA intron (ENSMUSG00000048832.9, intron 1 of 4) protein_coding-intron (ENSMUSG00000048832.9, intron 1 of 4) 16675 ENSMUSG00000048832.9 ENSMUSG00000048832 ENSMUST00000235921 Vps37c protein_coding Interval_45956 chr13 59634894 59635375 + 0 NA TTS (ENSMUSG00000021555.15) protein_coding-TTS (ENSMUSG00000021555.15) 31825 ENSMUSG00000114535.1 ENSMUSG00000114535 ENSMUST00000225230 Gm47246 TEC Interval_115671 chr4 101917234 101917629 + 0 NA Intergenic Intergenic 8310 ENSMUSG00000037028.7 ENSMUSG00000037028 ENSMUST00000075999 Gm12800 protein_coding Interval_157375 chr8 69952136 69952375 + 0 NA intron (ENSMUSG00000036180.15, intron 1 of 12) protein_coding-intron (ENSMUSG00000036180.15, intron 1 of 12) 44129 ENSMUSG00000036180.15 ENSMUSG00000036180 ENSMUST00000211960 Gatad2a protein_coding Interval_161046 chr8 117130200 117130535 + 0 NA intron (ENSMUSG00000031845.15, intron 9 of 11) protein_coding-intron (ENSMUSG00000031845.15, intron 9 of 10) 5032 ENSMUSG00000093446.1 ENSMUSG00000093446 ENSMUST00000176943 Gm20694 processed_pseudogene Interval_100551 chr2 170080132 170080556 + 0 NA Intergenic Intergenic 67759 ENSMUSG00000052056.14 ENSMUSG00000052056 ENSMUST00000149318 Zfp217 protein_coding Interval_1181 chr1 16664939 16666009 + 0 NA exon (ENSMUSG00000025940.6, exon 1 of 3) protein_coding-exon (ENSMUSG00000025940.6, exon 1 of 3) 264 ENSMUSG00000025940.6 ENSMUSG00000025940 ENSMUST00000176451 Tmem70 protein_coding Interval_83546 chr18 89103516 89103893 + 0 NA intron (ENSMUSG00000023066.10, intron 1 of 4) protein_coding-intron (ENSMUSG00000023066.10, intron 39 of 48) 2076 ENSMUSG00000023066.10 ENSMUSG00000023066 ENSMUST00000237196 Rttn protein_coding Interval_141726 chr6 134057445 134057678 + 0 NA intron (ENSMUSG00000030199.16, intron 1 of 4) protein_coding-intron (ENSMUSG00000030199.16, intron 1 of 7) -15793 ENSMUSG00000108214.1 ENSMUSG00000108214 ENSMUST00000204995 Gm43982 TEC Interval_154863 chr8 24479662 24480186 + 0 NA Intergenic Intergenic -26506 ENSMUSG00000109237.1 ENSMUSG00000109237 ENSMUST00000208727 9130214F15Rik TEC Interval_155153 chr8 27099980 27100199 + 0 NA intron (ENSMUSG00000031486.15, intron 2 of 15) protein_coding-intron (ENSMUSG00000031486.15, intron 2 of 18) -17280 ENSMUSG00000031486.15 ENSMUSG00000031486 ENSMUST00000179351 Adgra2 protein_coding Interval_132487 chr5 145253928 145254232 + 0 NA Intergenic Intergenic 12297 ENSMUSG00000106188.1 ENSMUSG00000106188 ENSMUST00000198053 Gm9710 processed_pseudogene Interval_74987 chr17 58995347 58995579 + 0 NA promoter-TSS (ENSMUSG00000086594.2) antisense-promoter-TSS (ENSMUSG00000086594.2) 17805 ENSMUSG00000024228.12 ENSMUSG00000024228 ENSMUST00000174122 Nudt12 protein_coding Interval_89227 chr2 18196622 18197831 + 0 NA intron (ENSMUSG00000026743.16, intron 15 of 22) protein_coding-intron (ENSMUSG00000026743.16, intron 15 of 22) -17784 ENSMUSG00000081619.1 ENSMUSG00000081619 ENSMUST00000118087 Gm13351 processed_pseudogene Interval_112254 chr4 38723242 38723492 + 0 NA intron (ENSMUSG00000085632.1, intron 1 of 5) lincRNA-intron (ENSMUSG00000085632.1, intron 1 of 5) 59558 ENSMUSG00000081427.1 ENSMUSG00000081427 ENSMUST00000122005 Gm12382 processed_pseudogene Interval_40547 chr12 105648422 105648712 + 0 NA intron (ENSMUSG00000041341.10, intron 20 of 41) protein_coding-intron (ENSMUSG00000041341.10, intron 20 of 41) 2724 ENSMUSG00000087854.1 ENSMUSG00000087854 ENSMUST00000157229 Gm22790 rRNA Interval_167882 chr9 73433797 73434228 + 0 NA Intergenic Intergenic 119858 ENSMUSG00000103832.1 ENSMUSG00000103832 ENSMUST00000195250 Gm37611 TEC Interval_141433 chr6 128261254 128262515 + 0 NA intron (ENSMUSG00000030353.15, intron 2 of 11) protein_coding-intron (ENSMUSG00000030353.15, intron 2 of 11) -32218 ENSMUSG00000095262.2 ENSMUSG00000095262 ENSMUST00000179119 Gm21893 processed_pseudogene Interval_65177 chr16 20370560 20370826 + 0 NA intron (ENSMUSG00000022822.16, intron 17 of 30) protein_coding-intron (ENSMUSG00000022822.16, intron 17 of 29) 28255 ENSMUSG00000022822.16 ENSMUSG00000022822 ENSMUST00000231522 Abcc5 protein_coding Interval_29713 chr11 86324052 86324467 + 0 NA intron (ENSMUSG00000034297.14, intron 8 of 29) protein_coding-intron (ENSMUSG00000034297.14, intron 8 of 29) 7924 ENSMUSG00000034297.14 ENSMUSG00000034297 ENSMUST00000144983 Med13 protein_coding Interval_124420 chr5 45856236 45858235 + 0 NA promoter-TSS (ENSMUSG00000015882.18) protein_coding-promoter-TSS (ENSMUSG00000015882.18) 380 ENSMUSG00000015882.18 ENSMUSG00000015882 ENSMUST00000186633 Lcorl protein_coding Interval_89975 chr2 26973528 26974095 + 0 NA intron (ENSMUSG00000014852.16, intron 1 of 28) protein_coding-intron (ENSMUSG00000014852.16, intron 1 of 23) -18127 ENSMUSG00000052406.14 ENSMUSG00000052406 ENSMUST00000128401 Rexo4 protein_coding Interval_7837 chr1 134055247 134056348 + 0 NA Intergenic Intergenic 18301 ENSMUSG00000041559.7 ENSMUSG00000041559 ENSMUST00000162779 Fmod protein_coding Interval_90686 chr2 31886914 31887798 + 0 NA promoter-TSS (ENSMUSG00000026840.14) protein_coding-promoter-TSS (ENSMUSG00000026840.14) 65 ENSMUSG00000026840.14 ENSMUSG00000026840 ENSMUST00000135995 Lamc3 protein_coding Interval_117126 chr4 119749919 119750967 + 0 NA intron (ENSMUSG00000028634.17, intron 2 of 2) protein_coding-intron (ENSMUSG00000028634.17, intron 1 of 3) -91662 ENSMUSG00000032978.14 ENSMUSG00000032978 ENSMUST00000044426 Guca2b protein_coding Interval_56000 chr14 103906357 103907319 + 0 NA Intergenic Intergenic -41258 ENSMUSG00000104311.1 ENSMUSG00000104311 ENSMUST00000194770 Gm37910 TEC Interval_6544 chr1 115684184 115685249 + 0 NA promoter-TSS (ENSMUSG00000070695.4) protein_coding-promoter-TSS (ENSMUSG00000070695.4) -40 ENSMUSG00000070695.4 ENSMUSG00000070695 ENSMUST00000043725 Cntnap5a protein_coding Interval_148 GL456389.1 26876 27674 + 0 NA NA NA NA NA Interval_5484 chr1 89159385 89159551 + 0 NA Intergenic Intergenic 62395 ENSMUSG00000102700.1 ENSMUSG00000102700 ENSMUST00000195426 Gm38312 TEC Interval_19261 chr10 95864590 95865275 + 0 NA Intergenic Intergenic 5867 ENSMUSG00000111992.1 ENSMUSG00000111992 ENSMUST00000218412 Gm47724 processed_pseudogene Interval_102608 chr3 28280577 28280747 + 0 NA intron (ENSMUSG00000027692.16, intron 1 of 30) protein_coding-intron (ENSMUSG00000027692.16, intron 1 of 30) 17080 ENSMUSG00000027692.16 ENSMUSG00000027692 ENSMUST00000192205 Tnik protein_coding Interval_12504 chr1 194518850 194519237 + 0 NA Intergenic Intergenic -99175 ENSMUSG00000026640.12 ENSMUSG00000026640 ENSMUST00000124785 Plxna2 protein_coding Interval_104732 chr3 69886981 69887858 + 0 NA Intergenic Intergenic -27497 ENSMUSG00000043461.13 ENSMUSG00000043461 ENSMUST00000171529 Sptssb protein_coding Interval_44374 chr13 44408481 44410377 + 0 NA intron (ENSMUSG00000098107.1, intron 2 of 2) lincRNA-intron (ENSMUSG00000098107.1, intron 2 of 2) -18312 ENSMUSG00000112936.1 ENSMUSG00000112936 ENSMUST00000222879 Gm33958 lincRNA Interval_147741 chr7 73293571 73293800 + 0 NA Intergenic Intergenic -16845 ENSMUSG00000108530.1 ENSMUSG00000108530 ENSMUST00000205600 4930429H19Rik lincRNA Interval_146322 chr7 45338038 45338738 + 0 NA TTS (ENSMUSG00000003863.18) protein_coding-TTS (ENSMUSG00000003863.18) 2772 ENSMUSG00000003863.18 ENSMUSG00000003863 ENSMUST00000209424 Ppfia3 protein_coding Interval_133612 chr6 7660453 7661241 + 0 NA Intergenic Intergenic 16941 ENSMUSG00000099182.1 ENSMUSG00000099182 ENSMUST00000184206 Gm8676 processed_pseudogene Interval_101367 chr2 180822586 180823063 + 0 NA intron (ENSMUSG00000074507.6, intron 1 of 1) lincRNA-intron (ENSMUSG00000074507.6, intron 1 of 1) 1806 ENSMUSG00000074507.6 ENSMUSG00000074507 ENSMUST00000148700 Gm14340 lincRNA Interval_174549 chrX 157568321 157569115 + 0 NA TTS (ENSMUSG00000046873.18) protein_coding-TTS (ENSMUSG00000046873.18) 267 ENSMUSG00000091736.3 ENSMUSG00000091736 ENSMUST00000065806 Yy2 protein_coding Interval_86301 chr19 38504522 38504942 + 0 NA intron (ENSMUSG00000024998.17, intron 2 of 2) protein_coding-intron (ENSMUSG00000024998.17, intron 2 of 2) -31530 ENSMUSG00000088940.1 ENSMUSG00000088940 ENSMUST00000158315 Gm24930 misc_RNA Interval_117247 chr4 120951109 120952275 + 0 NA promoter-TSS (ENSMUSG00000064141.14) protein_coding-promoter-TSS (ENSMUSG00000064141.14) -17006 ENSMUSG00000064141.14 ENSMUSG00000064141 ENSMUST00000132839 Zfp69 protein_coding Interval_145162 chr7 30393429 30393831 + 0 NA Intergenic Intergenic -20222 ENSMUSG00000030579.10 ENSMUSG00000030579 ENSMUST00000208125 Tyrobp protein_coding Interval_84929 chr19 18888455 18889786 + 0 NA intron (ENSMUSG00000024727.9, intron 38 of 38) protein_coding-intron (ENSMUSG00000024727.9, intron 38 of 38) 111980 ENSMUSG00000036192.15 ENSMUSG00000036192 ENSMUST00000147907 Rorb protein_coding Interval_104814 chr3 75055840 75056054 + 0 NA intron (ENSMUSG00000034151.13, intron 14 of 16) protein_coding-intron (ENSMUSG00000034151.13, intron 14 of 16) -31332 ENSMUSG00000102420.1 ENSMUSG00000102420 ENSMUST00000192431 Gm37464 TEC Interval_96061 chr2 119519994 119520187 + 0 NA exon (ENSMUSG00000048647.9, exon 13 of 13) protein_coding-exon (ENSMUSG00000048647.9, exon 13 of 13) -10861 ENSMUSG00000082369.1 ENSMUSG00000082369 ENSMUST00000119645 Gm14208 processed_pseudogene Interval_74639 chr17 54073155 54073795 + 0 NA Intergenic Intergenic 71103 ENSMUSG00000104810.1 ENSMUSG00000104810 ENSMUST00000198419 Gm5684 processed_pseudogene Interval_127623 chr5 105858961 105860299 + 0 NA Intergenic Intergenic 4072 ENSMUSG00000094708.1 ENSMUSG00000094708 ENSMUST00000180167 Gm10359 processed_pseudogene Interval_5039 chr1 84563603 84563912 + 0 NA intron (ENSMUSG00000036766.12, intron 4 of 4) protein_coding-intron (ENSMUSG00000036766.12, intron 4 of 12) 60084 ENSMUSG00000036766.12 ENSMUSG00000036766 ENSMUST00000191546 Dner protein_coding Interval_12332 chr1 192136356 192138852 + 0 NA promoter-TSS (ENSMUSG00000037395.15) protein_coding-promoter-TSS (ENSMUSG00000037395.15) 259 ENSMUSG00000097316.2 ENSMUSG00000097316 ENSMUST00000195083 Gm10516 antisense Interval_130753 chr5 130163456 130164181 + 0 NA Intergenic Intergenic 18894 ENSMUSG00000034110.8 ENSMUSG00000034110 ENSMUST00000144467 Kctd7 protein_coding Interval_40515 chr12 105420449 105420841 + 0 NA Intergenic Intergenic -16027 ENSMUSG00000113314.1 ENSMUSG00000113314 ENSMUST00000222652 Gm2721 lincRNA Interval_4322 chr1 72716751 72717013 + 0 NA Intergenic Intergenic 5568 ENSMUSG00000046330.10 ENSMUSG00000046330 ENSMUST00000211963 Rpl37a protein_coding Interval_143152 chr7 3703691 3704720 + 0 NA promoter-TSS (ENSMUSG00000006333.14) protein_coding-promoter-TSS (ENSMUSG00000006333.14) -159 ENSMUSG00000006333.14 ENSMUSG00000006333 ENSMUST00000136858 Rps9 protein_coding Interval_31865 chr11 103442586 103444447 + 0 NA Intergenic Intergenic 21780 ENSMUSG00000110636.1 ENSMUSG00000110636 ENSMUST00000212331 Gm39397 lincRNA Interval_2233 chr1 37250396 37250587 + 0 NA intron (ENSMUSG00000026114.14, intron 4 of 6) protein_coding-intron (ENSMUSG00000026114.14, intron 3 of 5) 32112 ENSMUSG00000026114.14 ENSMUSG00000026114 ENSMUST00000027288 Cnga3 protein_coding Interval_38412 chr12 78841086 78842628 + 0 NA exon (ENSMUSG00000021114.9, exon 9 of 9) protein_coding-exon (ENSMUSG00000021114.9, exon 9 of 9) 19638 ENSMUSG00000021114.9 ENSMUSG00000021114 ENSMUST00000219891 Atp6v1d protein_coding Interval_111209 chr4 14863038 14865037 + 0 NA promoter-TSS (ENSMUSG00000028221.3) protein_coding-promoter-TSS (ENSMUSG00000028221.3) -39 ENSMUSG00000028221.3 ENSMUSG00000028221 ENSMUST00000029875 Pip4p2 protein_coding Interval_75038 chr17 61939407 61939887 + 0 NA Intergenic Intergenic 67272 ENSMUSG00000117160.1 ENSMUSG00000117160 ENSMUST00000232834 Gm49859 processed_pseudogene Interval_109054 chr3 135491009 135491204 + 0 NA intron (ENSMUSG00000028164.15, intron 1 of 2) protein_coding-intron (ENSMUSG00000028164.15, intron 1 of 16) -4547 ENSMUSG00000083045.1 ENSMUSG00000083045 ENSMUST00000120489 Gm16100 processed_pseudogene Interval_108506 chr3 127805497 127806672 + 0 NA TTS (ENSMUSG00000074238.6) protein_coding-TTS (ENSMUSG00000074238.6) 15280 ENSMUSG00000046688.14 ENSMUSG00000046688 ENSMUST00000171621 Tifa protein_coding Interval_53274 chr14 55729042 55729243 + 0 NA Intergenic Intergenic -6961 ENSMUSG00000040472.15 ENSMUSG00000040472 ENSMUST00000227132 Rabggta protein_coding Interval_154133 chr8 12952986 12953255 + 0 NA intron (ENSMUSG00000031442.21, intron 1 of 29) protein_coding-intron (ENSMUSG00000031442.21, intron 2 of 29) 5179 ENSMUSG00000105030.1 ENSMUSG00000105030 ENSMUST00000200573 Gm38671 miRNA Interval_153887 chr8 10723467 10724194 + 0 NA intron (ENSMUSG00000109067.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000109067.1, intron 1 of 2) 344 ENSMUSG00000109067.1 ENSMUSG00000109067 ENSMUST00000207396 Gm44784 lincRNA Interval_149238 chr7 96550020 96550481 + 0 NA exon (ENSMUSG00000048078.16, exon 5 of 33) protein_coding-exon (ENSMUSG00000048078.16, exon 5 of 33) 78819 ENSMUSG00000085792.2 ENSMUSG00000085792 ENSMUST00000155217 Gm15414 antisense Interval_62347 chr15 90706055 90706725 + 0 NA Intergenic Intergenic 4021 ENSMUSG00000116404.1 ENSMUSG00000116404 ENSMUST00000229324 Gm49541 processed_pseudogene Interval_89640 chr2 23861136 23861975 + 0 NA Intergenic Intergenic 38502 ENSMUSG00000088368.1 ENSMUSG00000088368 ENSMUST00000157743 Gm26323 misc_RNA Interval_160388 chr8 108886495 108887388 + 0 NA intron (ENSMUSG00000038872.10, intron 10 of 15) protein_coding-intron (ENSMUSG00000038872.10, intron 4 of 9) 19379 ENSMUSG00000102989.1 ENSMUSG00000102989 ENSMUST00000195769 Gm38318 TEC Interval_76801 chr17 84166546 84166943 + 0 NA Intergenic Intergenic -19012 ENSMUSG00000117393.1 ENSMUSG00000117393 ENSMUST00000234321 Gm36279 antisense Interval_55132 chr14 78482433 78483509 + 0 NA Intergenic Intergenic 21000 ENSMUSG00000022016.17 ENSMUSG00000022016 ENSMUST00000226416 Akap11 protein_coding Interval_98735 chr2 154581598 154582431 + 0 NA Intergenic Intergenic -12122 ENSMUSG00000027490.17 ENSMUSG00000027490 ENSMUST00000000894 E2f1 protein_coding Interval_106518 chr3 96832914 96833356 + 0 NA promoter-TSS (ENSMUSG00000038298.14) protein_coding-promoter-TSS (ENSMUSG00000038298.14) 964 ENSMUSG00000038298.14 ENSMUSG00000038298 ENSMUST00000128789 Pdzk1 protein_coding Interval_114348 chr4 74053960 74054583 + 0 NA intron (ENSMUSG00000049122.17, intron 1 of 14) protein_coding-intron (ENSMUSG00000049122.17, intron 1 of 13) 9883 ENSMUSG00000081048.1 ENSMUSG00000081048 ENSMUST00000122355 Gm11760 processed_pseudogene Interval_41818 chr12 119864175 119864598 + 0 NA Intergenic Intergenic 12256 ENSMUSG00000114137.1 ENSMUSG00000114137 ENSMUST00000222158 Gm48685 unprocessed_pseudogene Interval_51447 chr14 27631220 27631751 + 0 NA intron (ENSMUSG00000040640.11, intron 2 of 3) protein_coding-intron (ENSMUSG00000040640.11, intron 1 of 15) -79327 ENSMUSG00000114482.1 ENSMUSG00000114482 ENSMUST00000225617 Gm7604 processed_pseudogene Interval_54015 chr14 64461792 64462030 + 0 NA Intergenic Intergenic -44963 ENSMUSG00000054733.9 ENSMUSG00000054733 ENSMUST00000209513 Msra protein_coding Interval_52388 chr14 45528917 45530942 + 0 NA promoter-TSS (ENSMUSG00000037712.16) protein_coding-promoter-TSS (ENSMUSG00000037712.16) -429 ENSMUSG00000115324.1 ENSMUSG00000115324 ENSMUST00000227827 4930527F14Rik bidirectional_promoter_lncRNA Interval_129283 chr5 118657765 118658059 + 0 NA intron (ENSMUSG00000018076.12, intron 2 of 4) protein_coding-intron (ENSMUSG00000018076.12, intron 2 of 30) 13539 ENSMUSG00000107116.1 ENSMUSG00000107116 ENSMUST00000202545 Gm43274 TEC Interval_111264 chr4 16162960 16164319 + 0 NA promoter-TSS (ENSMUSG00000041135.15) protein_coding-promoter-TSS (ENSMUSG00000041135.15) 4 ENSMUSG00000041135.15 ENSMUSG00000041135 ENSMUST00000183871 Ripk2 protein_coding Interval_127789 chr5 107853531 107854601 + 0 NA intron (ENSMUSG00000011831.16, intron 2 of 2) protein_coding-intron (ENSMUSG00000011831.16, intron 1 of 17) 9676 ENSMUSG00000083609.1 ENSMUSG00000083609 ENSMUST00000117837 Gm16007 processed_pseudogene Interval_59491 chr15 54298236 54299294 + 0 NA Intergenic Intergenic 6369 ENSMUSG00000115327.1 ENSMUSG00000115327 ENSMUST00000228522 Gm7566 processed_pseudogene Interval_80191 chr18 38144527 38145284 + 0 NA Intergenic Intergenic 58935 ENSMUSG00000051375.15 ENSMUSG00000051375 ENSMUST00000193828 Pcdh1 protein_coding Interval_159494 chr8 95073384 95074002 + 0 NA promoter-TSS (ENSMUSG00000031786.7) protein_coding-promoter-TSS (ENSMUSG00000031786.7) -8903 ENSMUSG00000031787.8 ENSMUSG00000031787 ENSMUST00000212565 Katnb1 protein_coding Interval_20677 chr10 120186666 120187214 + 0 NA intron (ENSMUSG00000020227.10, intron 1 of 11) protein_coding-intron (ENSMUSG00000020227.10, intron 1 of 11) -14718 ENSMUSG00000020225.10 ENSMUSG00000020225 ENSMUST00000123802 Tmbim4 protein_coding Interval_99011 chr2 156657994 156659011 + 0 NA intron (ENSMUSG00000061689.15, intron 1 of 12) protein_coding-intron (ENSMUSG00000061689.15, intron 1 of 12) -25034 ENSMUSG00000083498.1 ENSMUSG00000083498 ENSMUST00000118255 Gm14172 processed_pseudogene Interval_4916 chr1 82460960 82461279 + 0 NA intron (ENSMUSG00000067158.9, intron 44 of 47) protein_coding-intron (ENSMUSG00000067158.9, intron 44 of 47) -58373 ENSMUSG00000100786.1 ENSMUSG00000100786 ENSMUST00000187929 Gm28940 antisense Interval_76923 chr17 84992682 84993256 + 0 NA promoter-TSS (ENSMUSG00000061130.13) protein_coding-promoter-TSS (ENSMUSG00000061130.13) -711 ENSMUSG00000061130.13 ENSMUSG00000061130 ENSMUST00000234851 Ppm1b protein_coding Interval_10206 chr1 167192046 167192776 + 0 NA Intergenic Intergenic -6023 ENSMUSG00000103333.1 ENSMUSG00000103333 ENSMUST00000192124 Gm37994 processed_pseudogene Interval_161366 chr8 119981229 119981967 + 0 NA intron (ENSMUSG00000092329.1, intron 1 of 15) protein_coding-intron (ENSMUSG00000092329.1, intron 1 of 15) -31610 ENSMUSG00000031825.16 ENSMUSG00000031825 ENSMUST00000144801 Crispld2 protein_coding Interval_150480 chr7 111034368 111034568 + 0 NA TTS (ENSMUSG00000005609.16) protein_coding-TTS (ENSMUSG00000005609.16) -19322 ENSMUSG00000005609.16 ENSMUSG00000005609 ENSMUST00000209912 Ctr9 protein_coding Interval_135319 chr6 38304640 38305658 + 0 NA TTS (ENSMUSG00000029826.14) protein_coding-TTS (ENSMUSG00000029826.14) -5890 ENSMUSG00000047749.2 ENSMUSG00000047749 ENSMUST00000058524 Zc3hav1l protein_coding Interval_163176 chr9 16956389 16956845 + 0 NA Intergenic Intergenic -73428 ENSMUSG00000090602.3 ENSMUSG00000090602 ENSMUST00000164523 Gm5611 processed_pseudogene Interval_8054 chr1 135467034 135468350 + 0 NA promoter-TSS (ENSMUSG00000009418.16) protein_coding-promoter-TSS (ENSMUSG00000009418.16) -6503 ENSMUSG00000009418.16 ENSMUSG00000009418 ENSMUST00000112103 Nav1 protein_coding Interval_115346 chr4 97663888 97665463 + 0 NA intron (ENSMUSG00000048747.14, intron 1 of 2) protein_coding-intron (ENSMUSG00000048747.14, intron 3 of 5) 26061 ENSMUSG00000048747.14 ENSMUSG00000048747 ENSMUST00000147069 E130114P18Rik protein_coding Interval_133431 chr6 4988510 4988781 + 0 NA intron (ENSMUSG00000032827.15, intron 1 of 17) protein_coding-intron (ENSMUSG00000032827.15, intron 2 of 15) 29662 ENSMUSG00000097396.1 ENSMUSG00000097396 ENSMUST00000180645 Gm26556 TEC Interval_39211 chr12 85865721 85865984 + 0 NA exon (ENSMUSG00000012609.19, exon 10 of 10) protein_coding-exon (ENSMUSG00000012609.19, exon 10 of 10) -43602 ENSMUSG00000021252.11 ENSMUSG00000021252 ENSMUST00000142331 Erg28 protein_coding Interval_138954 chr6 93771271 93771626 + 0 NA intron (ENSMUSG00000045095.16, intron 5 of 19) protein_coding-intron (ENSMUSG00000045095.16, intron 6 of 21) -22324 ENSMUSG00000088627.1 ENSMUSG00000088627 ENSMUST00000158002 Gm23035 snRNA Interval_42947 chr13 21749223 21750898 + 0 NA TTS (ENSMUSG00000064288.4) protein_coding-TTS (ENSMUSG00000064288.4) 445 ENSMUSG00000064288.4 ENSMUSG00000064288 ENSMUST00000102983 H4c12 protein_coding Interval_142492 chr6 142837506 142838337 + 0 NA intron (ENSMUSG00000030283.7, intron 4 of 4) protein_coding-intron (ENSMUSG00000030283.7, intron 4 of 4) 23536 ENSMUSG00000072683.3 ENSMUSG00000072683 ENSMUST00000159599 Gm7457 processed_transcript Interval_86165 chr19 37496021 37498427 + 0 NA Intergenic Intergenic -23655 ENSMUSG00000053799.8 ENSMUSG00000053799 ENSMUST00000238817 Exoc6 protein_coding Interval_168490 chr9 82475851 82476694 + 0 NA Intergenic Intergenic -12820 ENSMUSG00000088760.1 ENSMUSG00000088760 ENSMUST00000158135 Gm24393 snRNA Interval_13555 chr10 19498150 19498437 + 0 NA intron (ENSMUSG00000110902.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000110902.1, intron 2 of 3) 3650 ENSMUSG00000110902.1 ENSMUSG00000110902 ENSMUST00000216664 Gm33104 lincRNA Interval_3224 chr1 54990259 54990465 + 0 NA exon (ENSMUSG00000025982.13, exon 23 of 25) protein_coding-exon (ENSMUSG00000025982.13, exon 23 of 25) 37032 ENSMUSG00000025982.13 ENSMUSG00000025982 ENSMUST00000188419 Sf3b1 protein_coding Interval_77791 chr18 3538395 3538689 + 0 NA Intergenic Intergenic -20133 ENSMUSG00000117454.1 ENSMUSG00000117454 ENSMUST00000234359 Gm50090 processed_pseudogene Interval_8542 chr1 141189641 141190842 + 0 NA Intergenic Intergenic 66916 ENSMUSG00000095238.2 ENSMUSG00000095238 ENSMUST00000179202 Gm4845 processed_pseudogene Interval_33568 chr11 117264207 117264818 + 0 NA intron (ENSMUSG00000059248.13, intron 1 of 10) protein_coding-intron (ENSMUSG00000059248.13, intron 2 of 11) -1075 ENSMUSG00000086050.1 ENSMUSG00000086050 ENSMUST00000123882 Gm16045 antisense Interval_164013 chr9 30900986 30902047 + 0 NA exon (ENSMUSG00000033453.8, exon 8 of 8) protein_coding-exon (ENSMUSG00000033453.8, exon 8 of 8) 8141 ENSMUSG00000033453.8 ENSMUSG00000033453 ENSMUST00000216215 Adamts15 protein_coding Interval_130623 chr5 129281897 129282862 + 0 NA Intergenic Intergenic -81741 ENSMUSG00000104681.1 ENSMUSG00000104681 ENSMUST00000199076 Gm43001 lincRNA Interval_128223 chr5 111848654 111849559 + 0 NA Intergenic Intergenic 55719 ENSMUSG00000105376.4 ENSMUSG00000105376 ENSMUST00000200641 Gm36535 lincRNA Interval_125311 chr5 66130229 66130713 + 0 NA intron (ENSMUSG00000070780.11, intron 1 of 2) protein_coding-intron (ENSMUSG00000070780.11, intron 1 of 5) 20485 ENSMUSG00000070780.11 ENSMUSG00000070780 ENSMUST00000201670 Rbm47 protein_coding Interval_143693 chr7 15647749 15647985 + 0 NA Intergenic Intergenic -4659 ENSMUSG00000105898.1 ENSMUSG00000105898 ENSMUST00000196512 Obox4-ps32 unprocessed_pseudogene Interval_73233 chr17 35699970 35701206 + 0 NA promoter-TSS (ENSMUSG00000003534.17) protein_coding-promoter-TSS (ENSMUSG00000003534.17) -1279 ENSMUSG00000093921.1 ENSMUSG00000093921 ENSMUST00000177607 Gm23864 snRNA Interval_120975 chr4 152020239 152020525 + 0 NA TTS (ENSMUSG00000028952.12) protein_coding-TTS (ENSMUSG00000028952.12) 6062 ENSMUSG00000028952.12 ENSMUSG00000028952 ENSMUST00000131935 Zbtb48 protein_coding Interval_22757 chr11 14848226 14848570 + 0 NA Intergenic Intergenic 68371 ENSMUSG00000082156.1 ENSMUSG00000082156 ENSMUST00000117791 Gm12008 processed_pseudogene Interval_63005 chr15 98617042 98617631 + 0 NA Intergenic Intergenic -12510 ENSMUSG00000022994.9 ENSMUSG00000022994 ENSMUST00000226500 Adcy6 protein_coding Interval_42143 chr13 9136648 9137154 + 0 NA exon (ENSMUSG00000033499.14, exon 4 of 17) protein_coding-exon (ENSMUSG00000033499.14, exon 4 of 17) 466 ENSMUSG00000033499.14 ENSMUSG00000033499 ENSMUST00000189330 Larp4b protein_coding Interval_23290 chr11 21191714 21192670 + 0 NA Intergenic Intergenic 5784 ENSMUSG00000088223.1 ENSMUSG00000088223 ENSMUST00000157598 Gm22600 misc_RNA Interval_73738 chr17 43085438 43086396 + 0 NA intron (ENSMUSG00000023915.5, intron 5 of 5) protein_coding-intron (ENSMUSG00000023915.5, intron 5 of 5) 69349 ENSMUSG00000023915.5 ENSMUSG00000023915 ENSMUST00000233482 Tnfrsf21 protein_coding Interval_155974 chr8 41347826 41349277 + 0 NA intron (ENSMUSG00000031591.14, intron 1 of 8) protein_coding-intron (ENSMUSG00000031591.14, intron 6 of 13) 26222 ENSMUSG00000031591.14 ENSMUSG00000031591 ENSMUST00000143057 Asah1 protein_coding Interval_113121 chr4 48463585 48464002 + 0 NA intron (ENSMUSG00000028345.15, intron 5 of 15) protein_coding-intron (ENSMUSG00000028345.15, intron 4 of 14) 9629 ENSMUSG00000028345.15 ENSMUSG00000028345 ENSMUST00000132911 Tex10 protein_coding Interval_37493 chr12 69351350 69352119 + 0 NA TTS (ENSMUSG00000020982.9) protein_coding-TTS (ENSMUSG00000020982.9) 5404 ENSMUSG00000020982.9 ENSMUSG00000020982 ENSMUST00000222065 Nemf protein_coding Interval_109184 chr3 137751340 137751659 + 0 NA Intergenic Intergenic 32116 ENSMUSG00000099011.1 ENSMUSG00000099011 ENSMUST00000184334 Mir6380 miRNA Interval_107914 chr3 116748283 116749252 + 0 NA exon (ENSMUSG00000033400.14, exon 33 of 33) protein_coding-exon (ENSMUSG00000033400.14, exon 33 of 33) -36555 ENSMUSG00000027957.13 ENSMUSG00000027957 ENSMUST00000169530 Slc35a3 protein_coding Interval_13350 chr10 16649597 16649837 + 0 NA Intergenic Intergenic 65449 ENSMUSG00000112929.1 ENSMUSG00000112929 ENSMUST00000217766 Gm47729 lincRNA Interval_45004 chr13 51382077 51382286 + 0 NA intron (ENSMUSG00000112959.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000112959.1, intron 1 of 1) -26458 ENSMUSG00000067586.4 ENSMUSG00000067586 ENSMUST00000087978 S1pr3 protein_coding Interval_127135 chr5 100512518 100512858 + 0 NA TTS (ENSMUSG00000105181.1) processed_pseudogene-TTS (ENSMUSG00000105181.1) 932 ENSMUSG00000105181.1 ENSMUSG00000105181 ENSMUST00000195972 Gm19620 processed_pseudogene Interval_56353 chr14 117998366 117999095 + 0 NA Intergenic Intergenic 28805 ENSMUSG00000022129.4 ENSMUSG00000022129 ENSMUST00000227850 Dct protein_coding Interval_174729 chrX 164232783 164233864 + 0 NA intron (ENSMUSG00000031377.11, intron 7 of 18) protein_coding-intron (ENSMUSG00000031377.11, intron 7 of 18) 24870 ENSMUSG00000031377.11 ENSMUSG00000031377 ENSMUST00000112263 Bmx protein_coding Interval_78610 chr18 15149748 15151419 + 0 NA intron (ENSMUSG00000036225.15, intron 1 of 4) protein_coding-intron (ENSMUSG00000036225.15, intron 1 of 4) -44199 ENSMUSG00000117613.1 ENSMUSG00000117613 ENSMUST00000235045 Gm2629 lincRNA Interval_31440 chr11 100681319 100683149 + 0 NA intron (ENSMUSG00000014198.15, intron 1 of 2) protein_coding-intron (ENSMUSG00000014198.15, intron 1 of 2) -5183 ENSMUSG00000085604.1 ENSMUSG00000085604 ENSMUST00000137154 Dhx58os antisense Interval_34753 chr12 9573677 9575550 + 0 NA exon (ENSMUSG00000048387.8, exon 1 of 3) protein_coding-exon (ENSMUSG00000048387.8, exon 1 of 3) -4028 ENSMUSG00000099360.1 ENSMUSG00000099360 ENSMUST00000188935 1700022H16Rik bidirectional_promoter_lncRNA Interval_95255 chr2 105263100 105264275 + 0 NA intron (ENSMUSG00000055312.2, intron 1 of 2) protein_coding-intron (ENSMUSG00000055312.2, intron 1 of 3) 39345 ENSMUSG00000055312.2 ENSMUSG00000055312 ENSMUST00000131060 Them7 protein_coding Interval_135894 chr6 48516580 48517112 + 0 NA intron (ENSMUSG00000107476.3, intron 3 of 5) transcribed_unitary_pseudogene-intron (ENSMUSG00000107476.3, intron 5 of 7) 4408 ENSMUSG00000107476.3 ENSMUSG00000107476 ENSMUST00000205224 Zfp862-ps transcribed_unitary_pseudogene Interval_76284 chr17 78713509 78714397 + 0 NA intron (ENSMUSG00000024077.15, intron 1 of 17) protein_coding-intron (ENSMUSG00000024077.15, intron 1 of 17) 23243 ENSMUSG00000024077.15 ENSMUSG00000024077 ENSMUST00000145480 Strn protein_coding Interval_49969 chr13 119084964 119085267 + 0 NA Intergenic Intergenic 184489 ENSMUSG00000105411.1 ENSMUSG00000105411 ENSMUST00000199467 Gm44488 miRNA Interval_112850 chr4 45506579 45507727 + 0 NA intron (ENSMUSG00000044813.15, intron 1 of 2) protein_coding-intron (ENSMUSG00000044813.15, intron 1 of 5) -6601 ENSMUSG00000088892.1 ENSMUSG00000088892 ENSMUST00000158267 Gm22518 miRNA Interval_170580 chr9 108998811 108999486 + 0 NA exon (ENSMUSG00000025648.18, exon 3 of 14) protein_coding-exon (ENSMUSG00000025648.18, exon 3 of 14) 260 ENSMUSG00000025648.18 ENSMUSG00000025648 ENSMUST00000198763 Pfkfb4 protein_coding Interval_130516 chr5 128522622 128523046 + 0 NA Intergenic Intergenic 2613 ENSMUSG00000105172.1 ENSMUSG00000105172 ENSMUST00000196193 Gm42499 TEC Interval_56299 chr14 116882648 116882977 + 0 NA Intergenic Intergenic -42719 ENSMUSG00000058571.11 ENSMUSG00000058571 ENSMUST00000078849 Gpc6 protein_coding Interval_170204 chr9 106176832 106178285 + 0 NA intron (ENSMUSG00000020257.13, intron 2 of 6) protein_coding-intron (ENSMUSG00000020257.13, intron 2 of 8) -1282 ENSMUSG00000065440.1 ENSMUSG00000065440 ENSMUST00000083506 Mirlet7g miRNA Interval_23802 chr11 26415500 26415972 + 0 NA intron (ENSMUSG00000004018.9, intron 4 of 4) protein_coding-intron (ENSMUSG00000004018.9, intron 5 of 13) 6529 ENSMUSG00000081811.1 ENSMUSG00000081811 ENSMUST00000118404 Gm12713 processed_pseudogene Interval_45906 chr13 59054382 59054591 + 0 NA TTS (ENSMUSG00000114437.1) antisense-TTS (ENSMUSG00000114437.1) 23810 ENSMUSG00000114896.1 ENSMUSG00000114896 ENSMUST00000224384 Gm34245 TEC Interval_139380 chr6 99646532 99646882 + 0 NA intron (ENSMUSG00000093661.1, intron 2 of 6) protein_coding-intron (ENSMUSG00000093661.1, intron 2 of 6) -14331 ENSMUSG00000030068.4 ENSMUSG00000030068 ENSMUST00000176255 Gm20696 protein_coding Interval_56393 chr14 118399224 118399547 + 0 NA Intergenic Intergenic -23191 ENSMUSG00000115515.1 ENSMUSG00000115515 ENSMUST00000226188 Gm5672 processed_pseudogene Interval_59343 chr15 51793269 51793706 + 0 NA intron (ENSMUSG00000022312.11, intron 3 of 4) protein_coding-intron (ENSMUSG00000022312.11, intron 5 of 7) 42770 ENSMUSG00000022312.11 ENSMUSG00000022312 ENSMUST00000228583 Eif3h protein_coding Interval_18796 chr10 90926443 90926976 + 0 NA intron (ENSMUSG00000058589.14, intron 21 of 25) protein_coding-intron (ENSMUSG00000058589.14, intron 7 of 11) 75610 ENSMUSG00000112601.1 ENSMUSG00000112601 ENSMUST00000218261 Gm47590 TEC Interval_122495 chr5 23441629 23441867 + 0 NA intron (ENSMUSG00000029004.15, intron 1 of 12) protein_coding-intron (ENSMUSG00000029004.15, intron 1 of 25) -8439 ENSMUSG00000073147.3 ENSMUSG00000073147 ENSMUST00000189045 5031425E22Rik lincRNA Interval_145511 chr7 35299398 35299794 + 0 NA intron (ENSMUSG00000063808.14, intron 8 of 20) protein_coding-intron (ENSMUSG00000063808.14, intron 8 of 19) -14277 ENSMUSG00000063808.14 ENSMUSG00000063808 ENSMUST00000153778 Gpatch1 protein_coding Interval_22458 chr11 10446761 10446962 + 0 NA Intergenic Intergenic -69779 ENSMUSG00000084045.1 ENSMUSG00000084045 ENSMUST00000118697 Gm11997 processed_pseudogene Interval_38446 chr12 79089125 79090019 + 0 NA promoter-TSS (ENSMUSG00000021120.11) protein_coding-promoter-TSS (ENSMUSG00000021120.11) 73 ENSMUSG00000021120.11 ENSMUSG00000021120 ENSMUST00000217979 Pigh protein_coding Interval_124538 chr5 50184805 50185039 + 0 NA Intergenic Intergenic -32325 ENSMUSG00000105020.1 ENSMUSG00000105020 ENSMUST00000196032 Gm7205 unprocessed_pseudogene Interval_6882 chr1 120340230 120342955 + 0 NA exon (ENSMUSG00000036907.9, exon 1 of 2) protein_coding-exon (ENSMUSG00000036907.9, exon 1 of 2) 1010 ENSMUSG00000036907.9 ENSMUSG00000036907 ENSMUST00000037286 C1ql2 protein_coding Interval_167522 chr9 70222058 70223605 + 0 NA intron (ENSMUSG00000032220.10, intron 1 of 17) protein_coding-intron (ENSMUSG00000032220.10, intron 1 of 27) 15481 ENSMUSG00000032220.10 ENSMUSG00000032220 ENSMUST00000034745 Myo1e protein_coding Interval_73188 chr17 35485667 35487428 + 0 NA Intergenic Intergenic 16450 ENSMUSG00000067235.14 ENSMUSG00000067235 ENSMUST00000174589 H2-Q10 protein_coding Interval_157345 chr8 69728479 69728818 + 0 NA Intergenic Intergenic -12185 ENSMUSG00000054648.8 ENSMUSG00000054648 ENSMUST00000238311 Zfp869 protein_coding Interval_141741 chr6 134156080 134156617 + 0 NA intron (ENSMUSG00000030199.16, intron 2 of 4) protein_coding-intron (ENSMUSG00000030199.16, intron 2 of 7) 15659 ENSMUSG00000091438.1 ENSMUSG00000091438 ENSMUST00000164616 Gm17088 antisense Interval_39203 chr12 85812798 85814279 + 0 NA TTS (ENSMUSG00000034258.4) protein_coding-TTS (ENSMUSG00000034258.4) 8712 ENSMUSG00000021252.11 ENSMUSG00000021252 ENSMUST00000142331 Erg28 protein_coding Interval_86161 chr19 37185889 37186706 + 0 NA intron (ENSMUSG00000097591.1, intron 2 of 2) protein_coding-intron (ENSMUSG00000039652.16, intron 1 of 10) 7111 ENSMUSG00000092994.1 ENSMUSG00000092994 ENSMUST00000175253 Gm23918 rRNA Interval_5468 chr1 89068980 89071006 + 0 NA promoter-TSS (ENSMUSG00000036206.12) protein_coding-promoter-TSS (ENSMUSG00000036206.12) -460 ENSMUSG00000036206.12 ENSMUSG00000036206 ENSMUST00000123745 Sh3bp4 protein_coding Interval_115299 chr4 95552147 95552391 + 0 NA Intergenic Intergenic -5251 ENSMUSG00000028573.18 ENSMUSG00000028573 ENSMUST00000142384 Fggy protein_coding Interval_26183 chr11 54944184 54944998 + 0 NA intron (ENSMUSG00000020400.17, intron 1 of 1) protein_coding-intron (ENSMUSG00000020400.17, intron 1 of 17) -2844 ENSMUSG00000082180.1 ENSMUSG00000082180 ENSMUST00000118301 Gm12230 processed_pseudogene Interval_35396 chr12 21306338 21306960 + 0 NA exon (ENSMUSG00000054309.9, exon 7 of 13) protein_coding-exon (ENSMUSG00000054309.9, exon 7 of 13) -9765 ENSMUSG00000062054.7 ENSMUSG00000062054 ENSMUST00000222344 Iah1 protein_coding Interval_132079 chr5 142667696 142669179 + 0 NA TTS (ENSMUSG00000029578.15) protein_coding-TTS (ENSMUSG00000029578.15) -24075 ENSMUSG00000050822.11 ENSMUSG00000050822 ENSMUST00000058418 Slc29a4 protein_coding Interval_142832 chr6 146285117 146285394 + 0 NA intron (ENSMUSG00000030287.15, intron 36 of 55) protein_coding-intron (ENSMUSG00000030287.15, intron 37 of 56) -14275 ENSMUSG00000107801.1 ENSMUSG00000107801 ENSMUST00000203251 Gm44086 TEC Interval_41852 chr13 3537365 3539197 + 0 NA promoter-TSS (ENSMUSG00000021218.10) protein_coding-promoter-TSS (ENSMUSG00000021218.10) -15758 ENSMUSG00000021218.10 ENSMUSG00000021218 ENSMUST00000221581 Gdi2 protein_coding Interval_10499 chr1 171338495 171338822 + 0 NA TTS (ENSMUSG00000013973.12) protein_coding-TTS (ENSMUSG00000013973.12) 6967 ENSMUSG00000013997.10 ENSMUSG00000013997 ENSMUST00000148339 Nit1 protein_coding Interval_61562 chr15 82373461 82374052 + 0 NA promoter-TSS (ENSMUSG00000061740.8) protein_coding-promoter-TSS (ENSMUSG00000061740.8) 6504 ENSMUSG00000061740.8 ENSMUSG00000061740 ENSMUST00000229438 Cyp2d22 protein_coding Interval_169761 chr9 101017972 101019067 + 0 NA intron (ENSMUSG00000032527.13, intron 5 of 6) protein_coding-intron (ENSMUSG00000032527.13, intron 5 of 14) 16362 ENSMUSG00000032527.13 ENSMUSG00000032527 ENSMUST00000189498 Pccb protein_coding Interval_25452 chr11 48685748 48686225 + 0 NA Intergenic Intergenic 1277 ENSMUSG00000088425.1 ENSMUSG00000088425 ENSMUST00000157800 Gm24422 snoRNA Interval_133896 chr6 14512832 14513258 + 0 NA Intergenic Intergenic -55895 ENSMUSG00000077334.1 ENSMUSG00000077334 ENSMUST00000104146 Gm23013 snRNA Interval_102508 chr3 27338562 27339050 + 0 NA exon (ENSMUSG00000039304.11, exon 5 of 5) protein_coding-exon (ENSMUSG00000039304.11, exon 5 of 5) 21745 ENSMUSG00000039304.11 ENSMUSG00000039304 ENSMUST00000174840 Tnfsf10 protein_coding Interval_233 KZ289068.1 236365 237264 + 0 NA NA NA NA NA Interval_107834 chr3 116006759 116008352 + 0 NA promoter-TSS (ENSMUSG00000027963.14) protein_coding-promoter-TSS (ENSMUSG00000027963.14) -273 ENSMUSG00000027963.14 ENSMUSG00000027963 ENSMUST00000106502 Extl2 protein_coding Interval_20812 chr10 121227607 121228314 + 0 NA Intergenic Intergenic -15042 ENSMUSG00000112871.1 ENSMUSG00000112871 ENSMUST00000219186 Gm35404 lincRNA Interval_113850 chr4 59358937 59359178 + 0 NA intron (ENSMUSG00000038578.15, intron 10 of 16) protein_coding-intron (ENSMUSG00000038578.15, intron 10 of 16) 9809 ENSMUSG00000083979.1 ENSMUSG00000083979 ENSMUST00000117967 Gm12527 processed_pseudogene Interval_148959 chr7 90409553 90410172 + 0 NA exon (ENSMUSG00000030616.16, exon 13 of 13) protein_coding-exon (ENSMUSG00000030616.16, exon 13 of 13) -16715 ENSMUSG00000044362.8 ENSMUSG00000044362 ENSMUST00000061391 Ccdc89 protein_coding Interval_50883 chr14 20445729 20447480 + 0 NA TTS (ENSMUSG00000039543.16) protein_coding-TTS (ENSMUSG00000039543.16) 12565 ENSMUSG00000021814.17 ENSMUSG00000021814 ENSMUST00000225132 Anxa7 protein_coding Interval_161555 chr8 121173979 121174922 + 0 NA intron (ENSMUSG00000092329.1, intron 1 of 15) protein_coding-intron (ENSMUSG00000092329.1, intron 1 of 15) 29152 ENSMUSG00000097097.2 ENSMUSG00000097097 ENSMUST00000212635 5033426O07Rik lincRNA Interval_11069 chr1 179141698 179142836 + 0 NA intron (ENSMUSG00000055067.15, intron 5 of 11) protein_coding-intron (ENSMUSG00000055067.15, intron 2 of 8) -224653 ENSMUSG00000089713.1 ENSMUSG00000089713 ENSMUST00000162545 Gm16564 antisense Interval_66352 chr16 33328551 33329034 + 0 NA Intergenic Intergenic 51883 ENSMUSG00000097318.2 ENSMUSG00000097318 ENSMUST00000180923 1700007L15Rik bidirectional_promoter_lncRNA Interval_767 chr1 10816262 10817429 + 0 NA Intergenic Intergenic 11564 ENSMUSG00000100212.1 ENSMUSG00000100212 ENSMUST00000189483 Gm5522 processed_pseudogene Interval_142751 chr6 145337627 145338189 + 0 NA Intergenic Intergenic -21300 ENSMUSG00000083962.1 ENSMUSG00000083962 ENSMUST00000118804 Gm15707 processed_pseudogene Interval_25011 chr11 43031823 43032589 + 0 NA Intergenic Intergenic -3540 ENSMUSG00000055456.1 ENSMUSG00000055456 ENSMUST00000069051 Gm9972 TEC Interval_48774 chr13 103071912 103072194 + 0 NA exon (ENSMUSG00000034751.17, exon 4 of 4) protein_coding-exon (ENSMUSG00000034751.17, exon 4 of 4) 24792 ENSMUSG00000034751.17 ENSMUSG00000034751 ENSMUST00000187024 Mast4 protein_coding Interval_45293 chr13 54108862 54109178 + 0 NA TTS (ENSMUSG00000021474.9) protein_coding-TTS (ENSMUSG00000021474.9) 23074 ENSMUSG00000021474.9 ENSMUSG00000021474 ENSMUST00000222285 Sfxn1 protein_coding Interval_80686 chr18 46311351 46312292 + 0 NA promoter-TSS (ENSMUSG00000071855.5) protein_coding-promoter-TSS (ENSMUSG00000071855.5) -20971 ENSMUSG00000071855.5 ENSMUSG00000071855 ENSMUST00000237152 Ccdc112 protein_coding Interval_47901 chr13 94264444 94265790 + 0 NA promoter-TSS (ENSMUSG00000021687.14) protein_coding-promoter-TSS (ENSMUSG00000021687.14) -18559 ENSMUSG00000021687.14 ENSMUSG00000021687 ENSMUST00000138255 Scamp1 protein_coding Interval_65223 chr16 20651066 20652278 + 0 NA promoter-TSS (ENSMUSG00000006998.16) protein_coding-promoter-TSS (ENSMUSG00000006998.16) -32 ENSMUSG00000006998.16 ENSMUSG00000006998 ENSMUST00000169184 Psmd2 protein_coding Interval_5841 chr1 92403716 92403946 + 0 NA Intergenic Intergenic 26701 ENSMUSG00000101522.1 ENSMUSG00000101522 ENSMUST00000190873 Gm7837 processed_pseudogene Interval_144390 chr7 24864208 24864736 + 0 NA TTS (ENSMUSG00000062732.10) protein_coding-TTS (ENSMUSG00000062732.10) 2259 ENSMUSG00000091955.2 ENSMUSG00000091955 ENSMUST00000170837 Gm9844 protein_coding Interval_36717 chr12 52435495 52436382 + 0 NA intron (ENSMUSG00000112139.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000112139.1, intron 1 of 1) 12187 ENSMUSG00000112139.1 ENSMUSG00000112139 ENSMUST00000218097 Gm47431 lincRNA Interval_145741 chr7 37972671 37973219 + 0 NA intron (ENSMUSG00000030421.9, intron 4 of 10) protein_coding-intron (ENSMUSG00000030421.9, intron 4 of 10) 50606 ENSMUSG00000030421.9 ENSMUSG00000030421 ENSMUST00000206169 Uri1 protein_coding Interval_132148 chr5 142959916 142964508 + 0 NA promoter-TSS (ENSMUSG00000029581.14) protein_coding-promoter-TSS (ENSMUSG00000029581.14) 1836 ENSMUSG00000029581.14 ENSMUSG00000029581 ENSMUST00000135293 Fscn1 protein_coding Interval_19605 chr10 105535219 105535403 + 0 NA promoter-TSS (ENSMUSG00000112571.1) TEC-promoter-TSS (ENSMUSG00000112571.1) -818 ENSMUSG00000112571.1 ENSMUSG00000112571 ENSMUST00000217855 Gm48207 TEC Interval_120813 chr4 150782268 150782621 + 0 NA Intergenic Intergenic -43289 ENSMUSG00000085097.1 ENSMUSG00000085097 ENSMUST00000133196 Gm13049 lincRNA Interval_18974 chr10 93514368 93514646 + 0 NA intron (ENSMUSG00000020017.14, intron 4 of 4) protein_coding-intron (ENSMUSG00000020017.14, intron 18 of 18) 13382 ENSMUSG00000020017.14 ENSMUSG00000020017 ENSMUST00000152883 Hal protein_coding Interval_62492 chr15 93460931 93461869 + 0 NA intron (ENSMUSG00000036167.16, intron 6 of 7) protein_coding-intron (ENSMUSG00000036167.16, intron 8 of 9) 58123 ENSMUSG00000036158.12 ENSMUSG00000036158 ENSMUST00000048982 Prickle1 protein_coding Interval_171181 chr9 115014229 115014452 + 0 NA intron (ENSMUSG00000040875.12, intron 1 of 4) protein_coding-intron (ENSMUSG00000040875.12, intron 1 of 11) 15724 ENSMUSG00000040875.12 ENSMUSG00000040875 ENSMUST00000182413 Osbpl10 protein_coding Interval_44865 chr13 49186866 49188475 + 0 NA promoter-TSS (ENSMUSG00000037966.15) protein_coding-promoter-TSS (ENSMUSG00000037966.15) -2626 ENSMUSG00000037966.15 ENSMUSG00000037966 ENSMUST00000153819 Ninj1 protein_coding Interval_14207 chr10 28843452 28844630 + 0 NA intron (ENSMUSG00000049109.15, intron 5 of 5) protein_coding-intron (ENSMUSG00000049109.15, intron 4 of 5) -37285 ENSMUSG00000112111.1 ENSMUSG00000112111 ENSMUST00000218178 Gm47834 processed_pseudogene Interval_151735 chr7 126330706 126331735 + 0 NA Intergenic Intergenic 20377 ENSMUSG00000108417.1 ENSMUSG00000108417 ENSMUST00000205858 Gm30928 lincRNA Interval_98461 chr2 152571946 152572528 + 0 NA promoter-TSS (ENSMUSG00000056544.2) protein_coding-promoter-TSS (ENSMUSG00000056544.2) -507 ENSMUSG00000056544.2 ENSMUSG00000056544 ENSMUST00000070722 Defb21 protein_coding Interval_146482 chr7 46260553 46260847 + 0 NA TTS (ENSMUSG00000009487.10) protein_coding-TTS (ENSMUSG00000009487.10) 19697 ENSMUSG00000009487.10 ENSMUSG00000009487 ENSMUST00000209802 Otog protein_coding Interval_44252 chr13 42989535 42989782 + 0 NA intron (ENSMUSG00000054728.17, intron 2 of 4) protein_coding-intron (ENSMUSG00000054728.17, intron 2 of 11) -8853 ENSMUSG00000090135.1 ENSMUSG00000090135 ENSMUST00000159361 Gm15809 sense_intronic Interval_151454 chr7 122668056 122668341 + 0 NA Intergenic Intergenic -3193 ENSMUSG00000066189.9 ENSMUSG00000066189 ENSMUST00000182095 Cacng3 protein_coding Interval_21243 chr10 127435089 127435953 + 0 NA intron (ENSMUSG00000025404.15, intron 1 of 23) protein_coding-intron (ENSMUSG00000025404.15, intron 1 of 23) -24014 ENSMUSG00000025404.15 ENSMUSG00000025404 ENSMUST00000171426 R3hdm2 protein_coding Interval_75255 chr17 65449815 65451015 + 0 NA exon (ENSMUSG00000045036.15, exon 10 of 16) protein_coding-exon (ENSMUSG00000045036.15, exon 10 of 16) -11718 ENSMUSG00000117300.1 ENSMUSG00000117300 ENSMUST00000233888 Gm18736 processed_pseudogene Interval_104600 chr3 68676893 68677284 + 0 NA Intergenic Intergenic -16933 ENSMUSG00000027776.12 ENSMUSG00000027776 ENSMUST00000195517 Il12a protein_coding Interval_74188 chr17 46977711 46977965 + 0 NA intron (ENSMUSG00000023977.15, intron 11 of 46) protein_coding-intron (ENSMUSG00000023977.15, intron 11 of 46) 15078 ENSMUSG00000084572.1 ENSMUSG00000084572 ENSMUST00000122623 Gm23657 misc_RNA Interval_121892 chr5 9228337 9228703 + 0 NA Intergenic Intergenic 32868 ENSMUSG00000080875.4 ENSMUSG00000080875 ENSMUST00000118351 Gm7332 processed_pseudogene Interval_139286 chr6 97877002 97877190 + 0 NA intron (ENSMUSG00000035158.15, intron 1 of 9) protein_coding-intron (ENSMUSG00000035158.15, intron 1 of 9) 13443 ENSMUSG00000083086.1 ENSMUSG00000083086 ENSMUST00000118062 Gm15531 processed_pseudogene Interval_132096 chr5 142747254 142747439 + 0 NA intron (ENSMUSG00000039477.16, intron 13 of 24) protein_coding-intron (ENSMUSG00000039477.16, intron 13 of 24) 18676 ENSMUSG00000039477.16 ENSMUSG00000039477 ENSMUST00000198181 Tnrc18 protein_coding Interval_62438 chr15 92784327 92784811 + 0 NA Intergenic Intergenic 40926 ENSMUSG00000036218.16 ENSMUSG00000036218 ENSMUST00000229577 Pdzrn4 protein_coding Interval_105691 chr3 88590121 88592786 + 0 NA Intergenic Intergenic 11845 ENSMUSG00000041355.13 ENSMUSG00000041355 ENSMUST00000035785 Ssr2 protein_coding Interval_35435 chr12 21724282 21724570 + 0 NA Intergenic Intergenic 52281 ENSMUSG00000091105.1 ENSMUSG00000091105 ENSMUST00000164169 Mrto4-ps2 processed_pseudogene Interval_14946 chr10 41380251 41380809 + 0 NA exon (ENSMUSG00000111601.1, exon 1 of 1) processed_pseudogene-exon (ENSMUSG00000111601.1, exon 1 of 1) 351 ENSMUSG00000111601.1 ENSMUSG00000111601 ENSMUST00000216029 Gm18986 processed_pseudogene Interval_64307 chr16 10374583 10374943 + 0 NA intron (ENSMUSG00000039179.13, intron 5 of 5) protein_coding-intron (ENSMUSG00000039179.13, intron 5 of 6) 20685 ENSMUSG00000039179.13 ENSMUSG00000039179 ENSMUST00000115831 Tekt5 protein_coding Interval_148474 chr7 81548357 81549046 + 0 NA intron (ENSMUSG00000038663.7, intron 7 of 12) protein_coding-intron (ENSMUSG00000038663.7, intron 7 of 12) -16180 ENSMUSG00000104453.1 ENSMUSG00000104453 ENSMUST00000193864 Gm37829 TEC Interval_133023 chr5 149352644 149353663 + 0 NA Intergenic Intergenic -15323 ENSMUSG00000107314.1 ENSMUSG00000107314 ENSMUST00000201641 Gm20488 processed_transcript Interval_92670 chr2 62363557 62364242 + 0 NA TTS (ENSMUSG00000035000.8) protein_coding-TTS (ENSMUSG00000035000.8) 6828 ENSMUSG00000087518.1 ENSMUSG00000087518 ENSMUST00000136879 Gm13561 antisense Interval_72652 chr17 31317446 31318209 + 0 NA intron (ENSMUSG00000024036.16, intron 3 of 6) protein_coding-intron (ENSMUSG00000024036.16, intron 5 of 19) -15790 ENSMUSG00000024036.16 ENSMUSG00000024036 ENSMUST00000235220 Slc37a1 protein_coding Interval_77165 chr17 87015475 87016980 + 0 NA intron (ENSMUSG00000024145.6, intron 4 of 5) protein_coding-intron (ENSMUSG00000024145.6, intron 4 of 5) 9179 ENSMUSG00000024145.6 ENSMUSG00000024145 ENSMUST00000024957 Pigf protein_coding Interval_48084 chr13 95873569 95874057 + 0 NA intron (ENSMUSG00000021676.10, intron 1 of 6) protein_coding-intron (ENSMUSG00000021676.10, intron 1 of 35) 23307 ENSMUSG00000065866.1 ENSMUSG00000065866 ENSMUST00000083932 Gm24032 snRNA Interval_33895 chr11 119238137 119240612 + 0 NA intron (ENSMUSG00000039963.20, intron 1 of 3) protein_coding-intron (ENSMUSG00000039963.20, intron 7 of 18) 10776 ENSMUSG00000039963.20 ENSMUSG00000039963 ENSMUST00000125724 Ccdc40 protein_coding Interval_58879 chr15 39652212 39653390 + 0 NA intron (ENSMUSG00000037386.16, intron 19 of 23) protein_coding-intron (ENSMUSG00000037386.16, intron 22 of 26) -93133 ENSMUSG00000022303.9 ENSMUSG00000022303 ENSMUST00000227792 Dcstamp protein_coding Interval_18658 chr10 88844761 88844955 + 0 NA Intergenic Intergenic -18075 ENSMUSG00000004356.8 ENSMUSG00000004356 ENSMUST00000220439 Utp20 protein_coding Interval_122154 chr5 18359555 18360984 + 0 NA promoter-TSS (ENSMUSG00000057614.6) protein_coding-promoter-TSS (ENSMUSG00000057614.6) 86 ENSMUSG00000057614.6 ENSMUSG00000057614 ENSMUST00000074694 Gnai1 protein_coding Interval_91527 chr2 41159647 41159974 + 0 NA intron (ENSMUSG00000049252.17, intron 32 of 62) protein_coding-intron (ENSMUSG00000049252.17, intron 35 of 90) 160953 ENSMUSG00000083260.1 ENSMUSG00000083260 ENSMUST00000121274 Gm13460 processed_pseudogene Interval_25144 chr11 44530806 44531315 + 0 NA intron (ENSMUSG00000019189.13, intron 2 of 4) protein_coding-intron (ENSMUSG00000019189.13, intron 2 of 10) -25771 ENSMUSG00000019189.13 ENSMUSG00000019189 ENSMUST00000129676 Rnf145 protein_coding Interval_15815 chr10 57514516 57514843 + 0 NA Intergenic Intergenic 17731 ENSMUSG00000019877.10 ENSMUSG00000019877 ENSMUST00000164400 Serinc1 protein_coding Interval_116068 chr4 107381013 107381278 + 0 NA promoter-TSS (ENSMUSG00000028614.14) protein_coding-promoter-TSS (ENSMUSG00000028614.14) 60 ENSMUSG00000028614.14 ENSMUSG00000028614 ENSMUST00000132950 Ndc1 protein_coding Interval_171297 chr9 116193396 116193845 + 0 NA intron (ENSMUSG00000111243.1, intron 3 of 3) lincRNA-intron (ENSMUSG00000111243.1, intron 3 of 3) 4440 ENSMUSG00000111243.1 ENSMUSG00000111243 ENSMUST00000214742 Gm4668 lincRNA Interval_146353 chr7 45475077 45475935 + 0 NA TTS (ENSMUSG00000011382.8) protein_coding-TTS (ENSMUSG00000011382.8) -6371 ENSMUSG00000023467.18 ENSMUSG00000023467 ENSMUST00000209763 Tulp2 protein_coding Interval_122927 chr5 27420664 27421941 + 0 NA intron (ENSMUSG00000061576.15, intron 3 of 3) protein_coding-intron (ENSMUSG00000061576.15, intron 3 of 25) 80060 ENSMUSG00000048703.9 ENSMUSG00000048703 ENSMUST00000124535 Speer4b protein_coding Interval_43228 chr13 25998374 25998917 + 0 NA Intergenic Intergenic -12352 ENSMUSG00000086531.2 ENSMUSG00000086531 ENSMUST00000225724 Gm11351 lincRNA Interval_38012 chr12 73949426 73950279 + 0 NA promoter-TSS (ENSMUSG00000087700.2) antisense-promoter-TSS (ENSMUSG00000087700.2) -11290 ENSMUSG00000066457.6 ENSMUSG00000066457 ENSMUST00000181735 S100a11-ps processed_pseudogene Interval_111250 chr4 15989535 15990119 + 0 NA intron (ENSMUSG00000028224.14, intron 14 of 15) protein_coding-intron (ENSMUSG00000028224.14, intron 14 of 15) -19899 ENSMUSG00000084190.1 ENSMUSG00000084190 ENSMUST00000118701 Gm11869 processed_pseudogene Interval_45273 chr13 53800481 53801145 + 0 NA Intergenic Intergenic 24186 ENSMUSG00000114143.1 ENSMUSG00000114143 ENSMUST00000221931 Gm48548 lincRNA Interval_10211 chr1 167222269 167223663 + 0 NA TTS (ENSMUSG00000026558.13) protein_coding-TTS (ENSMUSG00000026558.13) 13869 ENSMUSG00000026558.13 ENSMUSG00000026558 ENSMUST00000193579 Uck2 protein_coding Interval_131395 chr5 136929153 136929731 + 0 NA intron (ENSMUSG00000097908.7, intron 4 of 4) lincRNA-intron (ENSMUSG00000097908.7, intron 3 of 3) 10261 ENSMUSG00000097908.7 ENSMUSG00000097908 ENSMUST00000181190 4933404O12Rik lincRNA Interval_103162 chr3 36137412 36138117 + 0 NA Intergenic Intergenic -13398 ENSMUSG00000033883.11 ENSMUSG00000033883 ENSMUST00000165956 Zfp267 protein_coding Interval_122468 chr5 23224846 23226131 + 0 NA intron (ENSMUSG00000106379.1, intron 3 of 3) protein_coding-intron (ENSMUSG00000106379.1, intron 2 of 2) -1692 ENSMUSG00000104866.1 ENSMUSG00000104866 ENSMUST00000199085 Gm42948 antisense Interval_85614 chr19 29083417 29083629 + 0 NA Intergenic Intergenic 6732 ENSMUSG00000118320.1 ENSMUSG00000118320 ENSMUST00000236843 Gm50425 processed_pseudogene Interval_88156 chr19 59949680 59950560 + 0 NA Intergenic Intergenic 6398 ENSMUSG00000091378.1 ENSMUSG00000091378 ENSMUST00000168140 Gm4219 processed_transcript Interval_56334 chr14 117786816 117787152 + 0 NA intron (ENSMUSG00000058571.11, intron 4 of 9) protein_coding-intron (ENSMUSG00000058571.11, intron 4 of 8) 166863 ENSMUSG00000098648.1 ENSMUSG00000098648 ENSMUST00000183564 Mir6239 miRNA Interval_32500 chr11 107930887 107932463 + 0 NA Intergenic Intergenic 13941 ENSMUSG00000118606.1 ENSMUSG00000118606 ENSMUST00000239337 AL645535.1 processed_pseudogene Interval_132686 chr5 147154930 147156947 + 0 NA Intergenic Intergenic -32758 ENSMUSG00000053129.5 ENSMUSG00000053129 ENSMUST00000065382 Gsx1 protein_coding Interval_100316 chr2 168335297 168336162 + 0 NA promoter-TSS (ENSMUSG00000064961.1) snoRNA-promoter-TSS (ENSMUSG00000064961.1) 29 ENSMUSG00000064961.1 ENSMUSG00000064961 ENSMUST00000083027 Gm22704 snoRNA Interval_111438 chr4 21668856 21669836 + 0 NA Intergenic Intergenic -1694 ENSMUSG00000082672.1 ENSMUSG00000082672 ENSMUST00000120002 Gm11876 processed_pseudogene Interval_110627 chr4 5096482 5097494 + 0 NA Intergenic Intergenic -118114 ENSMUSG00000083228.1 ENSMUSG00000083228 ENSMUST00000118541 Gm11779 processed_pseudogene Interval_97983 chr2 146400352 146401115 + 0 NA intron (ENSMUSG00000037110.20, intron 22 of 41) protein_coding-intron (ENSMUSG00000037110.20, intron 21 of 40) 95186 ENSMUSG00000042938.8 ENSMUSG00000042938 ENSMUST00000122417 Gm14117 processed_pseudogene Interval_125104 chr5 64500084 64501997 + 0 NA Intergenic Intergenic 24032 ENSMUSG00000105352.4 ENSMUSG00000105352 ENSMUST00000196829 C030018K13Rik lincRNA Interval_12233 chr1 191013966 191015412 + 0 NA intron (ENSMUSG00000066595.9, intron 1 of 1) protein_coding-intron (ENSMUSG00000066595.9, intron 3 of 9) -2778 ENSMUSG00000066595.9 ENSMUSG00000066595 ENSMUST00000191946 Flvcr1 protein_coding Interval_116202 chr4 108656324 108656530 + 0 NA intron (ENSMUSG00000034557.14, intron 14 of 17) protein_coding-intron (ENSMUSG00000034557.14, intron 12 of 15) -18986 ENSMUSG00000091985.1 ENSMUSG00000091985 ENSMUST00000170933 Gm17354 lincRNA Interval_14310 chr10 30733297 30733755 + 0 NA intron (ENSMUSG00000039697.16, intron 1 of 13) protein_coding-intron (ENSMUSG00000039697.16, intron 2 of 15) 10436 ENSMUSG00000110894.1 ENSMUSG00000110894 ENSMUST00000215097 Gm48335 TEC Interval_79891 chr18 35765214 35765776 + 0 NA Intergenic Intergenic -4823 ENSMUSG00000091842.2 ENSMUSG00000091842 ENSMUST00000165299 Gm16490 processed_pseudogene Interval_31317 chr11 99659407 99660121 + 0 NA promoter-TSS (ENSMUSG00000069718.4) protein_coding-promoter-TSS (ENSMUSG00000069718.4) -804 ENSMUSG00000069718.4 ENSMUSG00000069718 ENSMUST00000092695 Gm11563 protein_coding Interval_141302 chr6 127079873 127080629 + 0 NA exon (ENSMUSG00000000182.9, exon 3 of 3) protein_coding-exon (ENSMUSG00000000182.9, exon 3 of 3) 7349 ENSMUSG00000000182.9 ENSMUSG00000000182 ENSMUST00000000186 Fgf23 protein_coding Interval_54448 chr14 69816743 69817003 + 0 NA Intergenic Intergenic -11648 ENSMUSG00000022075.7 ENSMUSG00000022075 ENSMUST00000225088 Rhobtb2 protein_coding Interval_101956 chr3 13215168 13215372 + 0 NA Intergenic Intergenic -72927 ENSMUSG00000102815.1 ENSMUSG00000102815 ENSMUST00000195003 Gm37813 TEC Interval_84597 chr19 14197535 14197799 + 0 NA Intergenic Intergenic -179296 ENSMUSG00000098074.1 ENSMUSG00000098074 ENSMUST00000182766 Gm26993 processed_pseudogene Interval_89714 chr2 24934580 24935949 + 0 NA promoter-TSS (ENSMUSG00000026972.15) protein_coding-promoter-TSS (ENSMUSG00000026972.15) -1567 ENSMUSG00000093190.1 ENSMUSG00000093190 ENSMUST00000175449 Gm22875 miRNA Interval_97126 chr2 131469421 131470085 + 0 NA Intergenic Intergenic -15113 ENSMUSG00000083671.1 ENSMUSG00000083671 ENSMUST00000117272 Gm14304 processed_pseudogene Interval_82882 chr18 78206122 78206461 + 0 NA exon (ENSMUSG00000024552.16, exon 1 of 8) protein_coding-exon (ENSMUSG00000024552.16, exon 1 of 8) -64172 ENSMUSG00000059336.14 ENSMUSG00000059336 ENSMUST00000160639 Slc14a1 protein_coding Interval_152262 chr7 131054602 131055474 + 0 NA intron (ENSMUSG00000047517.12, intron 12 of 40) protein_coding-intron (ENSMUSG00000047517.12, intron 10 of 46) 22985 ENSMUSG00000047517.12 ENSMUSG00000047517 ENSMUST00000209167 Dmbt1 protein_coding Interval_79914 chr18 35878607 35879216 + 0 NA Intergenic Intergenic 4597 ENSMUSG00000118080.1 ENSMUSG00000118080 ENSMUST00000235808 Gm41693 lincRNA Interval_52012 chr14 34616618 34617398 + 0 NA Intergenic Intergenic -25169 ENSMUSG00000021799.9 ENSMUSG00000021799 ENSMUST00000022331 Opn4 protein_coding Interval_141275 chr6 126777549 126777877 + 0 NA Intergenic Intergenic 32931 ENSMUSG00000118420.1 ENSMUSG00000118420 ENSMUST00000238440 Gm29788 transcribed_unitary_pseudogene Interval_3973 chr1 65210212 65210451 + 0 NA TTS (ENSMUSG00000025949.16) protein_coding-TTS (ENSMUSG00000025949.16) 23627 ENSMUSG00000025949.16 ENSMUSG00000025949 ENSMUST00000190847 Pikfyve protein_coding Interval_19080 chr10 94305724 94305969 + 0 NA Intergenic Intergenic -7143 ENSMUSG00000053420.6 ENSMUSG00000053420 ENSMUST00000065826 Gm4792 protein_coding Interval_153896 chr8 10865136 10866466 + 0 NA exon (ENSMUSG00000108961.1, exon 1 of 3) lincRNA-exon (ENSMUSG00000108961.1, exon 1 of 3) 385 ENSMUSG00000108961.1 ENSMUSG00000108961 ENSMUST00000207174 Gm32540 lincRNA Interval_159592 chr8 95685431 95685781 + 0 NA intron (ENSMUSG00000036564.17, intron 1 of 16) protein_coding-intron (ENSMUSG00000036564.17, intron 1 of 16) -10212 ENSMUSG00000110701.1 ENSMUSG00000110701 ENSMUST00000212264 Gm6013 processed_pseudogene Interval_162023 chr8 124499263 124499806 + 0 NA Intergenic Intergenic -21285 ENSMUSG00000031979.17 ENSMUSG00000031979 ENSMUST00000129977 Cog2 protein_coding Interval_97587 chr2 140170028 140171458 + 0 NA promoter-TSS (ENSMUSG00000027384.6) protein_coding-promoter-TSS (ENSMUSG00000027384.6) -287 ENSMUSG00000027384.6 ENSMUSG00000027384 ENSMUST00000125913 Ndufaf5 protein_coding Interval_59818 chr15 59538843 59539165 + 0 NA exon (ENSMUSG00000059586.10, exon 5 of 5) protein_coding-exon (ENSMUSG00000059586.10, exon 5 of 5) -79586 ENSMUSG00000115896.1 ENSMUSG00000115896 ENSMUST00000229684 Gm36677 lincRNA Interval_76194 chr17 76721188 76721501 + 0 NA Intergenic Intergenic 100146 ENSMUSG00000117498.1 ENSMUSG00000117498 ENSMUST00000234836 Gm18366 processed_pseudogene Interval_84502 chr19 11932936 11933323 + 0 NA TTS (ENSMUSG00000077227.1) snoRNA-TTS (ENSMUSG00000077227.1) 499 ENSMUSG00000077227.1 ENSMUSG00000077227 ENSMUST00000104039 Gm22272 snoRNA Interval_123320 chr5 31378636 31378846 + 0 NA Intergenic Intergenic -21946 ENSMUSG00000106935.1 ENSMUSG00000106935 ENSMUST00000200995 Gm19457 processed_pseudogene Interval_53701 chr14 60981861 60983209 + 0 NA intron (ENSMUSG00000060548.13, intron 5 of 5) protein_coding-intron (ENSMUSG00000060548.13, intron 5 of 9) 55356 ENSMUSG00000060548.13 ENSMUSG00000060548 ENSMUST00000225730 Tnfrsf19 protein_coding Interval_44714 chr13 47611536 47612100 + 0 NA Intergenic Intergenic -55732 ENSMUSG00000114509.1 ENSMUSG00000114509 ENSMUST00000223996 4930471G24Rik lincRNA Interval_66442 chr16 33877964 33879291 + 0 NA intron (ENSMUSG00000022817.15, intron 4 of 14) protein_coding-intron (ENSMUSG00000022817.15, intron 4 of 14) -13314 ENSMUSG00000022817.15 ENSMUSG00000022817 ENSMUST00000231409 Itgb5 protein_coding Interval_32377 chr11 107223270 107223606 + 0 NA intron (ENSMUSG00000040430.18, intron 8 of 9) protein_coding-intron (ENSMUSG00000040430.18, intron 7 of 7) 32344 ENSMUSG00000081360.1 ENSMUSG00000081360 ENSMUST00000119942 Gm11718 processed_pseudogene Interval_171414 chr9 117902354 117903382 + 0 NA intron (ENSMUSG00000032443.17, intron 8 of 8) protein_coding-intron (ENSMUSG00000032443.17, intron 7 of 9) 29724 ENSMUSG00000097240.1 ENSMUSG00000097240 ENSMUST00000180386 Gm26614 lincRNA Interval_133460 chr6 5343959 5344296 + 0 NA Intergenic Intergenic -46300 ENSMUSG00000042607.15 ENSMUSG00000042607 ENSMUST00000183358 Asb4 protein_coding Interval_101837 chr3 9853065 9853478 + 0 NA Intergenic Intergenic -19908 ENSMUSG00000027508.15 ENSMUSG00000027508 ENSMUST00000159497 Pag1 protein_coding Interval_21750 chr11 4105791 4106177 + 0 NA intron (ENSMUSG00000003585.13, intron 1 of 3) protein_coding-intron (ENSMUSG00000003585.13, intron 8 of 11) -1771 ENSMUSG00000082364.1 ENSMUSG00000082364 ENSMUST00000119801 Gm11955 processed_pseudogene Interval_64834 chr16 16296191 16296417 + 0 NA Intergenic Intergenic -8296 ENSMUSG00000022792.16 ENSMUSG00000022792 ENSMUST00000162734 Yars2 protein_coding Interval_10068 chr1 165585447 165586040 + 0 NA exon (ENSMUSG00000104474.1, exon 1 of 1) TEC-exon (ENSMUSG00000104474.1, exon 1 of 1) 560 ENSMUSG00000104474.1 ENSMUSG00000104474 ENSMUST00000191944 Gm38210 TEC Interval_15505 chr10 49914389 49914709 + 0 NA Intergenic Intergenic 41432 ENSMUSG00000110973.1 ENSMUSG00000110973 ENSMUST00000213795 Gm48130 processed_pseudogene Interval_87198 chr19 46830475 46831580 + 0 NA intron (ENSMUSG00000064105.13, intron 1 of 1) protein_coding-intron (ENSMUSG00000064105.13, intron 1 of 6) -34633 ENSMUSG00000064105.13 ENSMUSG00000064105 ENSMUST00000235671 Cnnm2 protein_coding Interval_170537 chr9 108578084 108579390 + 0 NA promoter-TSS (ENSMUSG00000066357.6) protein_coding-promoter-TSS (ENSMUSG00000066357.6) 2 ENSMUSG00000066357.6 ENSMUSG00000066357 ENSMUST00000068700 Wdr6 protein_coding Interval_25440 chr11 48581324 48581934 + 0 NA Intergenic Intergenic 13274 ENSMUSG00000083159.1 ENSMUSG00000083159 ENSMUST00000120905 Gm12180 processed_pseudogene Interval_65794 chr16 28898433 28899405 + 0 NA intron (ENSMUSG00000051065.9, intron 1 of 1) protein_coding-intron (ENSMUSG00000051065.9, intron 1 of 1) 52436 ENSMUSG00000116861.1 ENSMUSG00000116861 ENSMUST00000232466 Gm8253 processed_pseudogene Interval_13706 chr10 21252661 21253003 + 0 NA promoter-TSS (ENSMUSG00000111200.1) lincRNA-promoter-TSS (ENSMUSG00000111200.1) -718 ENSMUSG00000111200.1 ENSMUSG00000111200 ENSMUST00000217285 Gm33728 lincRNA Interval_99969 chr2 166175449 166176866 + 0 NA Intergenic Intergenic -13540 ENSMUSG00000088926.1 ENSMUSG00000088926 ENSMUST00000158301 Gm22687 rRNA Interval_29280 chr11 82631155 82632450 + 0 NA Intergenic Intergenic -1551 ENSMUSG00000069796.3 ENSMUSG00000069796 ENSMUST00000125600 Gm11426 lincRNA Interval_60640 chr15 75870281 75871130 + 0 NA Intergenic Intergenic 4115 ENSMUSG00000022575.5 ENSMUSG00000022575 ENSMUST00000231170 Gsdmd protein_coding Interval_79849 chr18 35572053 35572988 + 0 NA TTS (ENSMUSG00000117694.1) protein_coding-TTS (ENSMUSG00000117694.1) -2387 ENSMUSG00000102496.1 ENSMUSG00000102496 ENSMUST00000193225 Gm36989 TEC Interval_15079 chr10 42416226 42417905 + 0 NA intron (ENSMUSG00000038302.14, intron 3 of 10) protein_coding-intron (ENSMUSG00000038302.14, intron 5 of 12) -18824 ENSMUSG00000083429.2 ENSMUSG00000083429 ENSMUST00000117283 Gm15198 processed_pseudogene Interval_33829 chr11 118794887 118795257 + 0 NA intron (ENSMUSG00000025576.17, intron 2 of 14) protein_coding-intron (ENSMUSG00000025576.17, intron 2 of 14) 3700 ENSMUSG00000085059.1 ENSMUSG00000085059 ENSMUST00000146016 Gm11750 lincRNA Interval_5842 chr1 92418317 92418720 + 0 NA Intergenic Intergenic 12014 ENSMUSG00000101522.1 ENSMUSG00000101522 ENSMUST00000190873 Gm7837 processed_pseudogene Interval_134168 chr6 22322713 22322958 + 0 NA intron (ENSMUSG00000029672.16, intron 5 of 5) protein_coding-intron (ENSMUSG00000029672.16, intron 4 of 8) 21078 ENSMUSG00000029672.16 ENSMUSG00000029672 ENSMUST00000168965 Fam3c protein_coding Interval_4776 chr1 78557532 78557789 + 0 NA Intergenic Intergenic 45848 ENSMUSG00000012187.13 ENSMUSG00000012187 ENSMUST00000125458 Mogat1 protein_coding Interval_40989 chr12 110471131 110473521 + 0 NA intron (ENSMUSG00000017843.14, intron 3 of 12) protein_coding-intron (ENSMUSG00000017843.14, intron 3 of 7) 13290 ENSMUSG00000113585.1 ENSMUSG00000113585 ENSMUST00000222863 Gm19605 processed_transcript Interval_101740 chr3 9302477 9302771 + 0 NA Intergenic Intergenic 52022 ENSMUSG00000069114.8 ENSMUSG00000069114 ENSMUST00000155203 Zbtb10 protein_coding Interval_4254 chr1 72202991 72203461 + 0 NA intron (ENSMUSG00000039395.8, intron 1 of 4) protein_coding-intron (ENSMUSG00000039395.8, intron 1 of 4) 9081 ENSMUSG00000039395.8 ENSMUSG00000039395 ENSMUST00000048860 Mreg protein_coding Interval_124187 chr5 39576341 39577140 + 0 NA intron (ENSMUSG00000106741.3, intron 1 of 5) lincRNA-intron (ENSMUSG00000106741.3, intron 1 of 4) 26791 ENSMUSG00000106741.3 ENSMUSG00000106741 ENSMUST00000200770 4930513D17Rik lincRNA Interval_58711 chr15 37271597 37272163 + 0 NA intron (ENSMUSG00000022286.16, intron 2 of 3) protein_coding-intron (ENSMUSG00000022286.16, intron 2 of 15) -13713 ENSMUSG00000022286.16 ENSMUSG00000022286 ENSMUST00000159221 Grhl2 protein_coding Interval_77030 chr17 85817123 85818706 + 0 NA intron (ENSMUSG00000100345.1, intron 2 of 4) lincRNA-intron (ENSMUSG00000100345.1, intron 2 of 4) 6130 ENSMUSG00000100345.1 ENSMUSG00000100345 ENSMUST00000186162 Gm29418 lincRNA Interval_4557 chr1 75000315 75000723 + 0 NA intron (ENSMUSG00000026162.7, intron 2 of 4) protein_coding-intron (ENSMUSG00000026162.7, intron 2 of 4) 46267 ENSMUSG00000103145.1 ENSMUSG00000103145 ENSMUST00000194616 Gm37744 TEC Interval_73945 chr17 45610123 45611309 + 0 NA Intergenic Intergenic -8746 ENSMUSG00000079471.4 ENSMUSG00000079471 ENSMUST00000208801 Mymx protein_coding Interval_100725 chr2 172058903 172060388 + 0 NA Intergenic Intergenic 13119 ENSMUSG00000087409.1 ENSMUSG00000087409 ENSMUST00000137886 Gm14271 antisense Interval_63077 chr15 98985533 98986087 + 0 NA promoter-TSS (ENSMUSG00000097587.2) processed_transcript-promoter-TSS (ENSMUSG00000097587.2) 2462 ENSMUSG00000097587.2 ENSMUSG00000097587 ENSMUST00000180490 4930578M01Rik processed_transcript Interval_8668 chr1 146609956 146610506 + 0 NA intron (ENSMUSG00000035131.14, intron 3 of 8) protein_coding-intron (ENSMUSG00000035131.14, intron 2 of 7) 112544 ENSMUSG00000035131.14 ENSMUSG00000035131 ENSMUST00000125331 Brinp3 protein_coding Interval_31709 chr11 102367370 102368185 + 0 NA Intergenic Intergenic -1574 ENSMUSG00000006574.15 ENSMUSG00000006574 ENSMUST00000151050 Slc4a1 protein_coding Interval_68705 chr16 84834311 84836470 + 0 NA promoter-TSS (ENSMUSG00000022890.13) protein_coding-promoter-TSS (ENSMUSG00000022890.13) -385 ENSMUSG00000022890.13 ENSMUSG00000022890 ENSMUST00000148787 Atp5j protein_coding Interval_91037 chr2 34606261 34606551 + 0 NA intron (ENSMUSG00000038696.14, intron 10 of 11) protein_coding-intron (ENSMUSG00000038696.14, intron 9 of 10) 41407 ENSMUSG00000081992.1 ENSMUSG00000081992 ENSMUST00000119822 Gm13408 processed_pseudogene Interval_135041 chr6 34910256 34911260 + 0 NA promoter-TSS (ENSMUSG00000058486.11) protein_coding-promoter-TSS (ENSMUSG00000058486.11) 75 ENSMUSG00000058486.11 ENSMUSG00000058486 ENSMUST00000134830 Wdr91 protein_coding Interval_158499 chr8 84094921 84096776 + 0 NA exon (ENSMUSG00000031706.7, exon 21 of 21) protein_coding-exon (ENSMUSG00000031706.7, exon 21 of 21) 8920 ENSMUSG00000037103.8 ENSMUSG00000037103 ENSMUST00000210625 Dcaf15 protein_coding Interval_108575 chr3 129224085 129225606 + 0 NA exon (ENSMUSG00000106078.1, exon 1 of 1) TEC-exon (ENSMUSG00000106078.1, exon 1 of 1) 683 ENSMUSG00000106078.1 ENSMUSG00000106078 ENSMUST00000199637 Gm43697 TEC Interval_40016 chr12 100507115 100507429 + 0 NA intron (ENSMUSG00000033530.8, intron 1 of 9) protein_coding-intron (ENSMUSG00000033530.8, intron 1 of 19) -40974 ENSMUSG00000033530.8 ENSMUSG00000033530 ENSMUST00000220614 Ttc7b protein_coding Interval_15630 chr10 52450965 52451228 + 0 NA TTS (ENSMUSG00000112361.1) TEC-TTS (ENSMUSG00000112361.1) 727 ENSMUSG00000112563.1 ENSMUSG00000112563 ENSMUST00000218661 Gm47608 TEC Interval_120149 chr4 143050642 143050989 + 0 NA intron (ENSMUSG00000110067.2, intron 1 of 1) protein_coding-intron (ENSMUSG00000110067.2, intron 1 of 2) 22951 ENSMUSG00000110067.2 ENSMUSG00000110067 ENSMUST00000238915 6330411D24Rik protein_coding Interval_110824 chr4 8750937 8752592 + 0 NA TTS (ENSMUSG00000041235.12) protein_coding-TTS (ENSMUSG00000041235.12) -78182 ENSMUSG00000082122.1 ENSMUSG00000082122 ENSMUST00000120923 Gm11809 processed_pseudogene Interval_4502 chr1 74627368 74628522 + 0 NA exon (ENSMUSG00000033276.18, exon 20 of 27) protein_coding-exon (ENSMUSG00000033276.18, exon 20 of 27) 24735 ENSMUSG00000033276.18 ENSMUSG00000033276 ENSMUST00000123154 Stk36 protein_coding Interval_130009 chr5 123697307 123697614 + 0 NA TTS (ENSMUSG00000029427.11) protein_coding-TTS (ENSMUSG00000029427.11) 12685 ENSMUSG00000104694.1 ENSMUSG00000104694 ENSMUST00000198221 Gm43797 TEC Interval_22774 chr11 15254229 15254549 + 0 NA Intergenic Intergenic -157911 ENSMUSG00000064746.1 ENSMUSG00000064746 ENSMUST00000082812 Gm24707 snRNA Interval_92236 chr2 57253042 57253981 + 0 NA intron (ENSMUSG00000026827.12, intron 1 of 5) protein_coding-intron (ENSMUSG00000026827.12, intron 1 of 16) -15003 ENSMUSG00000054181.11 ENSMUSG00000054181 ENSMUST00000146529 A930012O16Rik processed_transcript Interval_27232 chr11 64520093 64520784 + 0 NA exon (ENSMUSG00000047759.6, exon 2 of 2) protein_coding-exon (ENSMUSG00000047759.6, exon 2 of 2) 70202 ENSMUSG00000080430.1 ENSMUSG00000080430 ENSMUST00000116780 Gm24275 miRNA Interval_1274 chr1 18927723 18927983 + 0 NA Intergenic Intergenic 41980 ENSMUSG00000088800.1 ENSMUSG00000088800 ENSMUST00000158175 Gm24075 snoRNA Interval_82405 chr18 73753974 73754887 + 0 NA promoter-TSS (ENSMUSG00000036941.2) protein_coding-promoter-TSS (ENSMUSG00000036941.2) 49 ENSMUSG00000036941.2 ENSMUSG00000036941 ENSMUST00000041138 Elac1 protein_coding Interval_48524 chr13 99763120 99764531 + 0 NA Intergenic Intergenic -71296 ENSMUSG00000077673.1 ENSMUSG00000077673 ENSMUST00000104485 Gm24471 snoRNA Interval_28206 chr11 74371629 74372074 + 0 NA Intergenic Intergenic 9782 ENSMUSG00000058275.3 ENSMUSG00000058275 ENSMUST00000077794 Olfr412 protein_coding Interval_33502 chr11 116902609 116902976 + 0 NA Intergenic Intergenic -44543 ENSMUSG00000043857.16 ENSMUSG00000043857 ENSMUST00000126757 Mgat5b protein_coding Interval_112891 chr4 45848953 45849619 + 0 NA intron (ENSMUSG00000028327.14, intron 1 of 18) protein_coding-intron (ENSMUSG00000028327.14, intron 1 of 17) -24925 ENSMUSG00000028327.14 ENSMUSG00000028327 ENSMUST00000165478 Stra6l protein_coding Interval_53218 chr14 55194542 55194907 + 0 NA Intergenic Intergenic 25015 ENSMUSG00000115077.1 ENSMUSG00000115077 ENSMUST00000228176 Gm46455 unprocessed_pseudogene Interval_61517 chr15 82127394 82128646 + 0 NA promoter-TSS (ENSMUSG00000068114.7) protein_coding-promoter-TSS (ENSMUSG00000068114.7) 42 ENSMUSG00000068114.7 ENSMUSG00000068114 ENSMUST00000229384 Ccdc134 protein_coding Interval_109606 chr3 145086525 145086931 + 0 NA intron (ENSMUSG00000036960.10, intron 6 of 12) protein_coding-intron (ENSMUSG00000036960.10, intron 6 of 13) 12378 ENSMUSG00000036960.10 ENSMUSG00000036960 ENSMUST00000197121 Clca2 protein_coding Interval_93060 chr2 69883715 69886105 + 0 NA promoter-TSS (ENSMUSG00000085735.1) antisense-promoter-TSS (ENSMUSG00000085735.1) 687 ENSMUSG00000051730.15 ENSMUSG00000051730 ENSMUST00000135487 Mettl5 protein_coding Interval_97844 chr2 144393085 144394262 + 0 NA TTS (ENSMUSG00000027425.18) protein_coding-TTS (ENSMUSG00000027425.18) 24677 ENSMUSG00000098387.2 ENSMUSG00000098387 ENSMUST00000183618 Pet117 protein_coding Interval_167204 chr9 66144219 66145811 + 0 NA Intergenic Intergenic -13211 ENSMUSG00000032380.9 ENSMUSG00000032380 ENSMUST00000129778 Dapk2 protein_coding Interval_62722 chr15 96459906 96461774 + 0 NA promoter-TSS (ENSMUSG00000033228.8) protein_coding-promoter-TSS (ENSMUSG00000033228.8) -16785 ENSMUSG00000033228.8 ENSMUSG00000033228 ENSMUST00000227133 Scaf11 protein_coding Interval_142810 chr6 145948800 145949067 + 0 NA exon (ENSMUSG00000108200.1, exon 1 of 1) TEC-exon (ENSMUSG00000108200.1, exon 1 of 1) 1857 ENSMUSG00000108200.1 ENSMUSG00000108200 ENSMUST00000204817 Gm43931 TEC Interval_152042 chr7 128529344 128529951 + 0 NA intron (ENSMUSG00000030847.8, intron 1 of 3) protein_coding-intron (ENSMUSG00000030847.8, intron 1 of 3) 6031 ENSMUSG00000030847.8 ENSMUSG00000030847 ENSMUST00000033136 Bag3 protein_coding Interval_103734 chr3 52187482 52187682 + 0 NA TTS (ENSMUSG00000104055.1) processed_transcript-TTS (ENSMUSG00000104055.1) 980 ENSMUSG00000104055.1 ENSMUSG00000104055 ENSMUST00000195251 Gm38132 processed_transcript Interval_106384 chr3 95807612 95808363 + 0 NA intron (ENSMUSG00000028106.13, intron 1 of 9) protein_coding-intron (ENSMUSG00000028106.13, intron 1 of 10) 3132 ENSMUSG00000105093.1 ENSMUSG00000105093 ENSMUST00000198305 Gm17815 processed_pseudogene Interval_163918 chr9 28499410 28499653 + 0 NA intron (ENSMUSG00000062257.13, intron 1 of 2) protein_coding-intron (ENSMUSG00000062257.13, intron 1 of 6) 206783 ENSMUSG00000106021.1 ENSMUSG00000106021 ENSMUST00000199274 Gm44316 miRNA Interval_78651 chr18 16442806 16443121 + 0 NA Intergenic Intergenic -168019 ENSMUSG00000063628.2 ENSMUSG00000063628 ENSMUST00000076710 Gm7665 processed_pseudogene Interval_111394 chr4 20420451 20421720 + 0 NA intron (ENSMUSG00000055761.14, intron 3 of 5) protein_coding-intron (ENSMUSG00000055761.14, intron 3 of 4) 29989 ENSMUSG00000081964.1 ENSMUSG00000081964 ENSMUST00000117877 Gm11873 processed_pseudogene Interval_58559 chr15 36073394 36073784 + 0 NA intron (ENSMUSG00000037627.16, intron 14 of 27) protein_coding-intron (ENSMUSG00000037627.16, intron 3 of 6) -32910 ENSMUSG00000037627.16 ENSMUSG00000037627 ENSMUST00000164955 Rgs22 protein_coding Interval_94386 chr2 90667859 90668150 + 0 NA Intergenic Intergenic -17167 ENSMUSG00000051329.13 ENSMUSG00000051329 ENSMUST00000126503 Nup160 protein_coding Interval_71319 chr17 22196111 22196470 + 0 NA TTS (ENSMUSG00000096433.2) protein_coding-TTS (ENSMUSG00000096433.2) -10182 ENSMUSG00000117252.1 ENSMUSG00000117252 ENSMUST00000233487 Gm9514 processed_pseudogene Interval_27708 chr11 69584754 69585178 + 0 NA intron (ENSMUSG00000059552.13, intron 1 of 10) protein_coding-intron (ENSMUSG00000059552.13, intron 1 of 10) 4607 ENSMUSG00000059552.13 ENSMUSG00000059552 ENSMUST00000130540 Trp53 protein_coding Interval_48608 chr13 100640225 100641307 + 0 NA intron (ENSMUSG00000021635.14, intron 4 of 17) protein_coding-intron (ENSMUSG00000021635.14, intron 4 of 16) 10236 ENSMUSG00000021635.14 ENSMUSG00000021635 ENSMUST00000225155 Rad17 protein_coding Interval_33896 chr11 119248971 119249385 + 0 NA intron (ENSMUSG00000039963.20, intron 13 of 20) protein_coding-intron (ENSMUSG00000039963.20, intron 12 of 18) 20580 ENSMUSG00000039963.20 ENSMUSG00000039963 ENSMUST00000125724 Ccdc40 protein_coding Interval_131822 chr5 140120754 140121859 + 0 NA intron (ENSMUSG00000029554.15, intron 2 of 6) protein_coding-intron (ENSMUSG00000029554.15, intron 13 of 17) 20107 ENSMUSG00000087606.1 ENSMUSG00000087606 ENSMUST00000128520 Gm16121 antisense Interval_34846 chr12 12652120 12653311 + 0 NA Intergenic Intergenic 17202 ENSMUSG00000118614.1 ENSMUSG00000118614 ENSMUST00000239228 AC107703.1 lincRNA Interval_124502 chr5 49543919 49545129 + 0 NA Intergenic Intergenic -7634 ENSMUSG00000083477.2 ENSMUSG00000083477 ENSMUST00000120352 Gm5555 processed_pseudogene Interval_12839 chr10 6109076 6110087 + 0 NA Intergenic Intergenic -187195 ENSMUSG00000019775.17 ENSMUSG00000019775 ENSMUST00000019909 Rgs17 protein_coding Interval_704 chr1 10031324 10032422 + 0 NA exon (ENSMUSG00000025917.9, exon 5 of 5) protein_coding-exon (ENSMUSG00000025917.9, exon 5 of 5) 6072 ENSMUSG00000025917.9 ENSMUSG00000025917 ENSMUST00000191296 Cops5 protein_coding Interval_10385 chr1 170191195 170191774 + 0 NA Intergenic Intergenic -13712 ENSMUSG00000103908.1 ENSMUSG00000103908 ENSMUST00000192981 Gm37502 lincRNA Interval_58581 chr15 36353705 36355069 + 0 NA TTS (ENSMUSG00000115715.1) processed_transcript-TTS (ENSMUSG00000115715.1) -4633 ENSMUSG00000115715.1 ENSMUSG00000115715 ENSMUST00000228118 Gm33936 processed_transcript Interval_11262 chr1 180567902 180569405 + 0 NA promoter-TSS (ENSMUSG00000026496.11) protein_coding-promoter-TSS (ENSMUSG00000026496.11) -18548 ENSMUSG00000098926.1 ENSMUSG00000098926 ENSMUST00000183443 Mir6904 miRNA Interval_133732 chr6 10611221 10611626 + 0 NA Intergenic Intergenic 163591 ENSMUSG00000108222.1 ENSMUSG00000108222 ENSMUST00000203205 Gm2691 processed_pseudogene Interval_142207 chr6 138572788 138572975 + 0 NA intron (ENSMUSG00000030226.12, intron 1 of 4) protein_coding-intron (ENSMUSG00000030226.12, intron 1 of 4) -7743 ENSMUSG00000100166.1 ENSMUSG00000100166 ENSMUST00000190868 B230110G15Rik antisense Interval_137049 chr6 66953894 66954142 + 0 NA intron (ENSMUSG00000036402.13, intron 3 of 4) protein_coding-intron (ENSMUSG00000036402.13, intron 3 of 4) 54395 ENSMUSG00000107634.1 ENSMUSG00000107634 ENSMUST00000204824 Gm36816 antisense Interval_32905 chr11 112990803 112991424 + 0 NA Intergenic Intergenic 165934 ENSMUSG00000020624.3 ENSMUSG00000020624 ENSMUST00000153429 4933434M16Rik lincRNA Interval_5728 chr1 91286686 91286884 + 0 NA TTS (ENSMUSG00000034343.14) protein_coding-TTS (ENSMUSG00000034343.14) -9260 ENSMUSG00000083064.1 ENSMUSG00000083064 ENSMUST00000117121 Gm7785 processed_pseudogene Interval_11421 chr1 181852829 181853795 + 0 NA promoter-TSS (ENSMUSG00000056699.7) lincRNA-promoter-TSS (ENSMUSG00000056699.7) -123 ENSMUSG00000056699.7 ENSMUSG00000056699 ENSMUST00000070987 Gm5533 lincRNA Interval_170248 chr9 106447264 106448875 + 0 NA promoter-TSS (ENSMUSG00000042073.15) protein_coding-promoter-TSS (ENSMUSG00000042073.15) -449 ENSMUSG00000042210.17 ENSMUSG00000042210 ENSMUST00000187798 Abhd14a protein_coding Interval_103718 chr3 51997573 51998239 + 0 NA intron (ENSMUSG00000061143.15, intron 1 of 4) protein_coding-intron (ENSMUSG00000061143.15, intron 1 of 4) -5947 ENSMUSG00000103784.1 ENSMUSG00000103784 ENSMUST00000194640 Gm37526 TEC Interval_91087 chr2 34961283 34962035 + 0 NA promoter-TSS (ENSMUSG00000026875.14) protein_coding-promoter-TSS (ENSMUSG00000026875.14) 3245 ENSMUSG00000083533.2 ENSMUSG00000083533 ENSMUST00000121107 Gm13450 processed_pseudogene Interval_93563 chr2 74294226 74294479 + 0 NA Intergenic Intergenic 13365 ENSMUSG00000085405.1 ENSMUSG00000085405 ENSMUST00000153743 4930441J16Rik lincRNA Interval_172227 chrX 10716937 10719240 + 0 NA exon (ENSMUSG00000008035.12, exon 2 of 2) protein_coding-exon (ENSMUSG00000008035.12, exon 2 of 2) 620 ENSMUSG00000008035.12 ENSMUSG00000008035 ENSMUST00000156321 Mid1ip1 protein_coding Interval_14538 chr10 35131125 35132392 + 0 NA Intergenic Intergenic -10555 ENSMUSG00000111216.1 ENSMUSG00000111216 ENSMUST00000216575 Gm47044 processed_pseudogene Interval_33316 chr11 115883523 115886388 + 0 NA intron (ENSMUSG00000034427.17, intron 20 of 42) protein_coding-intron (ENSMUSG00000034427.17, intron 13 of 20) 7421 ENSMUSG00000034427.17 ENSMUSG00000034427 ENSMUST00000141947 Myo15b protein_coding Interval_744 chr1 10402998 10403498 + 0 NA intron (ENSMUSG00000042501.12, intron 7 of 9) protein_coding-intron (ENSMUSG00000042501.12, intron 8 of 10) 48741 ENSMUSG00000103810.1 ENSMUSG00000103810 ENSMUST00000194845 Gm38005 TEC Interval_169843 chr9 102423386 102424334 + 0 NA Intergenic Intergenic 50742 ENSMUSG00000088138.1 ENSMUSG00000088138 ENSMUST00000157513 Gm22894 snRNA Interval_134548 chr6 29492787 29493494 + 0 NA intron (ENSMUSG00000059022.15, intron 2 of 17) protein_coding-intron (ENSMUSG00000059022.15, intron 22 of 36) -5318 ENSMUSG00000088643.1 ENSMUSG00000088643 ENSMUST00000158018 Gm26484 snRNA Interval_132592 chr5 146583689 146586572 + 0 NA promoter-TSS (ENSMUSG00000041468.7) protein_coding-promoter-TSS (ENSMUSG00000041468.7) -311 ENSMUSG00000041468.7 ENSMUSG00000041468 ENSMUST00000197825 Gpr12 protein_coding Interval_86611 chr19 42040045 42040511 + 0 NA intron (ENSMUSG00000025172.3, intron 3 of 8) protein_coding-intron (ENSMUSG00000025172.3, intron 3 of 8) 4278 ENSMUSG00000025172.3 ENSMUSG00000025172 ENSMUST00000026172 Ankrd2 protein_coding Interval_62346 chr15 90686943 90687440 + 0 NA Intergenic Intergenic -7815 ENSMUSG00000052560.15 ENSMUSG00000052560 ENSMUST00000154569 Cpne8 protein_coding Interval_65635 chr16 24449622 24450476 + 0 NA intron (ENSMUSG00000033306.15, intron 1 of 11) protein_coding-intron (ENSMUSG00000033306.15, intron 2 of 12) -43632 ENSMUSG00000087861.1 ENSMUSG00000087861 ENSMUST00000157236 Gm24440 snRNA Interval_127731 chr5 107157358 107157887 + 0 NA TTS (ENSMUSG00000105033.1) TEC-TTS (ENSMUSG00000105033.1) 2949 ENSMUSG00000105033.1 ENSMUSG00000105033 ENSMUST00000198390 Gm43423 TEC Interval_23225 chr11 20661076 20663440 + 0 NA Intergenic Intergenic -67162 ENSMUSG00000084252.1 ENSMUSG00000084252 ENSMUST00000120008 Gm12036 processed_pseudogene Interval_74255 chr17 47751796 47752076 + 0 NA intron (ENSMUSG00000023990.18, intron 1 of 6) protein_coding-intron (ENSMUSG00000023990.18, intron 1 of 8) 25092 ENSMUSG00000023987.14 ENSMUSG00000023987 ENSMUST00000144955 Pgc protein_coding Interval_56646 chr14 121118959 121120400 + 0 NA intron (ENSMUSG00000025555.14, intron 1 of 7) protein_coding-intron (ENSMUSG00000025555.14, intron 2 of 26) 17600 ENSMUSG00000025555.14 ENSMUSG00000025555 ENSMUST00000137971 Farp1 protein_coding Interval_138038 chr6 84506834 84507567 + 0 NA Intergenic Intergenic -28676 ENSMUSG00000107926.1 ENSMUSG00000107926 ENSMUST00000204799 4930504D19Rik lincRNA Interval_78671 chr18 16701546 16701836 + 0 NA intron (ENSMUSG00000024304.14, intron 2 of 15) protein_coding-intron (ENSMUSG00000024304.14, intron 2 of 15) -27042 ENSMUSG00000085575.1 ENSMUSG00000085575 ENSMUST00000149095 Gm15485 antisense Interval_88672 chr2 9530905 9531164 + 0 NA Intergenic Intergenic -44802 ENSMUSG00000081202.1 ENSMUSG00000081202 ENSMUST00000121535 Gm13220 processed_pseudogene Interval_113647 chr4 57250411 57251171 + 0 NA intron (ENSMUSG00000038764.14, intron 7 of 9) protein_coding-intron (ENSMUSG00000038764.14, intron 7 of 25) -49305 ENSMUSG00000085654.1 ENSMUSG00000085654 ENSMUST00000129102 Gm12536 lincRNA Interval_134551 chr6 29501504 29501769 + 0 NA TTS (ENSMUSG00000059022.15) protein_coding-TTS (ENSMUSG00000059022.15) -3028 ENSMUSG00000059022.15 ENSMUSG00000059022 ENSMUST00000161237 Kcp protein_coding Interval_49250 chr13 109812258 109813219 + 0 NA intron (ENSMUSG00000021699.17, intron 6 of 15) protein_coding-intron (ENSMUSG00000021699.17, intron 5 of 14) -91071 ENSMUSG00000084651.1 ENSMUSG00000084651 ENSMUST00000122702 Mir1904 miRNA Interval_31074 chr11 98002763 98003503 + 0 NA exon (ENSMUSG00000020882.17, exon 14 of 14) protein_coding-exon (ENSMUSG00000020882.17, exon 14 of 14) -7204 ENSMUSG00000038352.15 ENSMUSG00000038352 ENSMUST00000107563 Arl5c protein_coding Interval_132532 chr5 145817149 145818434 + 0 NA promoter-TSS (ENSMUSG00000106473.1) unprocessed_pseudogene-promoter-TSS (ENSMUSG00000106473.1) -970 ENSMUSG00000106473.1 ENSMUSG00000106473 ENSMUST00000197207 Gm19089 unprocessed_pseudogene Interval_26920 chr11 61577569 61580055 + 0 NA intron (ENSMUSG00000001036.17, intron 1 of 2) protein_coding-intron (ENSMUSG00000001036.17, intron 1 of 9) 875 ENSMUSG00000001036.17 ENSMUSG00000001036 ENSMUST00000137525 Epn2 protein_coding Interval_117597 chr4 124916985 124917175 + 0 NA exon (ENSMUSG00000028876.7, exon 15 of 15) protein_coding-exon (ENSMUSG00000028876.7, exon 15 of 15) 17678 ENSMUSG00000028876.7 ENSMUSG00000028876 ENSMUST00000151791 Epha10 protein_coding Interval_122016 chr5 13990951 13991337 + 0 NA Intergenic Intergenic -36750 ENSMUSG00000105528.1 ENSMUSG00000105528 ENSMUST00000197239 Gm43519 TEC Interval_147822 chr7 73819552 73820155 + 0 NA TTS (ENSMUSG00000105381.1) miRNA-TTS (ENSMUSG00000105381.1) 263 ENSMUSG00000105381.1 ENSMUSG00000105381 ENSMUST00000199151 Mir7234 miRNA Interval_27792 chr11 70020653 70021961 + 0 NA intron (ENSMUSG00000020886.17, intron 1 of 6) protein_coding-intron (ENSMUSG00000020886.17, intron 2 of 4) -5692 ENSMUSG00000020886.17 ENSMUSG00000020886 ENSMUST00000131497 Dlg4 protein_coding Interval_130715 chr5 129953715 129955145 + 0 NA intron (ENSMUSG00000066735.8, intron 1 of 1) protein_coding-intron (ENSMUSG00000066735.8, intron 1 of 2) 8850 ENSMUSG00000107118.1 ENSMUSG00000107118 ENSMUST00000201618 Gm42986 TEC Interval_97421 chr2 136002054 136002469 + 0 NA intron (ENSMUSG00000039943.16, intron 4 of 8) protein_coding-intron (ENSMUSG00000039943.16, intron 32 of 35) 23990 ENSMUSG00000064444.1 ENSMUSG00000064444 ENSMUST00000082510 Gm26227 snRNA Interval_67467 chr16 49138635 49138964 + 0 NA exon (ENSMUSG00000092009.1, exon 24 of 41) protein_coding-exon (ENSMUSG00000092009.1, exon 24 of 41) 81313 ENSMUSG00000092009.1 ENSMUSG00000092009 ENSMUST00000168680 Myh15 protein_coding Interval_133135 chr5 150082652 150083490 + 0 NA promoter-TSS (ENSMUSG00000107384.1) antisense-promoter-TSS (ENSMUSG00000107384.1) -276 ENSMUSG00000107384.1 ENSMUSG00000107384 ENSMUST00000202037 Gm42557 antisense Interval_83703 chr19 3860517 3860960 + 0 NA intron (ENSMUSG00000024843.15, intron 1 of 1) protein_coding-intron (ENSMUSG00000024843.15, intron 1 of 11) 6935 ENSMUSG00000117912.1 ENSMUSG00000117912 ENSMUST00000235621 Gm50383 antisense Interval_118428 chr4 131438371 131439621 + 0 NA Intergenic Intergenic -48201 ENSMUSG00000078531.3 ENSMUSG00000078531 ENSMUST00000149942 Gm831 lincRNA Interval_104751 chr3 70406487 70406901 + 0 NA Intergenic Intergenic -6625 ENSMUSG00000102663.1 ENSMUSG00000102663 ENSMUST00000193699 Gm6631 processed_pseudogene Interval_45332 chr13 54487982 54488710 + 0 NA Intergenic Intergenic 11743 ENSMUSG00000086567.1 ENSMUSG00000086567 ENSMUST00000140330 Gm2830 processed_pseudogene Interval_121629 chr5 4059312 4060733 + 0 NA exon (ENSMUSG00000040407.18, exon 1 of 1) protein_coding-exon (ENSMUSG00000040407.18, exon 1 of 1) -13549 ENSMUSG00000106535.1 ENSMUSG00000106535 ENSMUST00000198500 Gm43031 sense_intronic Interval_12574 chr10 3447052 3447249 + 0 NA intron (ENSMUSG00000040653.6, intron 3 of 3) protein_coding-intron (ENSMUSG00000040653.6, intron 3 of 3) 22127 ENSMUSG00000080655.1 ENSMUSG00000080655 ENSMUST00000117005 Gm24482 miRNA Interval_134106 chr6 20305930 20306495 + 0 NA Intergenic Intergenic 518159 ENSMUSG00000107067.1 ENSMUSG00000107067 ENSMUST00000201774 Gm42581 processed_pseudogene Interval_21815 chr11 4518557 4519361 + 0 NA intron (ENSMUSG00000034354.17, intron 5 of 17) protein_coding-intron (ENSMUSG00000034354.17, intron 5 of 17) -30593 ENSMUSG00000034354.17 ENSMUSG00000034354 ENSMUST00000144242 Mtmr3 protein_coding Interval_99875 chr2 165455839 165456946 + 0 NA intron (ENSMUSG00000018459.15, intron 1 of 2) protein_coding-intron (ENSMUSG00000018459.15, intron 1 of 12) 14128 ENSMUSG00000085358.1 ENSMUSG00000085358 ENSMUST00000152284 Gm14437 antisense Interval_35792 chr12 29882853 29884002 + 0 NA intron (ENSMUSG00000061911.15, intron 18 of 24) protein_coding-intron (ENSMUSG00000061911.15, intron 18 of 24) 31879 ENSMUSG00000061911.15 ENSMUSG00000061911 ENSMUST00000219744 Myt1l protein_coding Interval_71186 chr17 20994157 20994489 + 0 NA exon (ENSMUSG00000045575.2, exon 2 of 2) protein_coding-exon (ENSMUSG00000045575.2, exon 2 of 2) 2141 ENSMUSG00000045575.2 ENSMUSG00000045575 ENSMUST00000056339 Vmn1r233 protein_coding Interval_64767 chr16 15582739 15582921 + 0 NA intron (ENSMUSG00000022674.15, intron 2 of 5) protein_coding-intron (ENSMUSG00000022674.15, intron 2 of 4) -4535 ENSMUSG00000116386.1 ENSMUSG00000116386 ENSMUST00000229197 Gm49538 processed_pseudogene Interval_134422 chr6 28545002 28545176 + 0 NA intron (ENSMUSG00000001424.14, intron 9 of 16) protein_coding-intron (ENSMUSG00000001424.14, intron 9 of 23) -18401 ENSMUSG00000104325.1 ENSMUSG00000104325 ENSMUST00000195742 Gm37321 TEC Interval_1500 chr1 24245665 24246679 + 0 NA intron (ENSMUSG00000026147.16, intron 31 of 31) protein_coding-intron (ENSMUSG00000026147.16, intron 37 of 37) 16655 ENSMUSG00000026147.16 ENSMUSG00000026147 ENSMUST00000147902 Col9a1 protein_coding Interval_127119 chr5 100401863 100402274 + 0 NA intron (ENSMUSG00000035325.16, intron 3 of 3) protein_coding-intron (ENSMUSG00000035325.16, intron 6 of 27) -9455 ENSMUSG00000035325.16 ENSMUSG00000035325 ENSMUST00000182144 Sec31a protein_coding Interval_13041 chr10 9872142 9872383 + 0 NA intron (ENSMUSG00000019790.17, intron 2 of 25) protein_coding-intron (ENSMUSG00000019790.17, intron 2 of 27) -20113 ENSMUSG00000064609.1 ENSMUSG00000064609 ENSMUST00000082675 Gm25635 snoRNA Interval_8428 chr1 139194811 139196106 + 0 NA Intergenic Intergenic 40306 ENSMUSG00000102243.1 ENSMUSG00000102243 ENSMUST00000191655 Gm37718 TEC Interval_159243 chr8 92121280 92121923 + 0 NA Intergenic Intergenic 36665 ENSMUSG00000110380.1 ENSMUSG00000110380 ENSMUST00000210508 Gm45332 lincRNA Interval_112740 chr4 44532802 44533877 + 0 NA intron (ENSMUSG00000014030.15, intron 6 of 6) protein_coding-intron (ENSMUSG00000014030.15, intron 9 of 9) 74229 ENSMUSG00000092761.1 ENSMUSG00000092761 ENSMUST00000175020 Mir5120 miRNA Interval_11409 chr1 181773689 181774043 + 0 NA exon (ENSMUSG00000047369.17, exon 70 of 84) protein_coding-exon (ENSMUSG00000047369.17, exon 70 of 84) 39834 ENSMUSG00000064970.1 ENSMUSG00000064970 ENSMUST00000083036 Gm23690 snRNA Interval_44323 chr13 43619710 43620105 + 0 NA intron (ENSMUSG00000044164.2, intron 1 of 1) protein_coding-intron (ENSMUSG00000044164.2, intron 1 of 1) 3924 ENSMUSG00000044164.2 ENSMUSG00000044164 ENSMUST00000161817 Rnf182 protein_coding Interval_14728 chr10 39415933 39416308 + 0 NA intron (ENSMUSG00000019843.14, intron 2 of 12) protein_coding-intron (ENSMUSG00000019843.14, intron 2 of 13) -3889 ENSMUSG00000019843.14 ENSMUSG00000019843 ENSMUST00000123205 Fyn protein_coding Interval_130841 chr5 131194645 131194888 + 0 NA intron (ENSMUSG00000034040.16, intron 1 of 1) protein_coding-intron (ENSMUSG00000034040.16, intron 1 of 10) -60055 ENSMUSG00000106710.1 ENSMUSG00000106710 ENSMUST00000202871 Gm43166 sense_intronic Interval_1092 chr1 15577747 15577963 + 0 NA intron (ENSMUSG00000092083.4, intron 2 of 2) protein_coding-intron (ENSMUSG00000092083.4, intron 1 of 1) 21606 ENSMUSG00000104149.1 ENSMUSG00000104149 ENSMUST00000194564 Gm37138 TEC Interval_169408 chr9 97024415 97025268 + 0 NA Intergenic Intergenic 8875 ENSMUSG00000085541.1 ENSMUSG00000085541 ENSMUST00000124366 Gm16010 antisense Interval_160239 chr8 107390840 107391081 + 0 NA intron (ENSMUSG00000003849.8, intron 5 of 5) protein_coding-intron (ENSMUSG00000003849.8, intron 5 of 5) 12246 ENSMUSG00000003849.8 ENSMUSG00000003849 ENSMUST00000003947 Nqo1 protein_coding Interval_95959 chr2 118689565 118690382 + 0 NA exon (ENSMUSG00000074923.10, exon 5 of 11) protein_coding-exon (ENSMUSG00000074923.10, exon 5 of 11) 13990 ENSMUSG00000078137.1 ENSMUSG00000078137 ENSMUST00000104937 Ankrd63 protein_coding Interval_41997 chr13 6193472 6194400 + 0 NA Intergenic Intergenic -75172 ENSMUSG00000113765.1 ENSMUSG00000113765 ENSMUST00000222170 Gm47549 lincRNA Interval_162358 chr8 127375461 127376378 + 0 NA intron (ENSMUSG00000025812.18, intron 1 of 1) protein_coding-intron (ENSMUSG00000025812.18, intron 9 of 23) -185516 ENSMUSG00000090074.1 ENSMUSG00000090074 ENSMUST00000161478 Gm6921 processed_pseudogene Interval_6435 chr1 108548210 108549399 + 0 NA Intergenic Intergenic 63710 ENSMUSG00000101231.1 ENSMUSG00000101231 ENSMUST00000185509 Gm28283 processed_pseudogene Interval_72048 chr17 27716743 27718451 + 0 NA exon (ENSMUSG00000024215.14, exon 1 of 3) protein_coding-exon (ENSMUSG00000024215.14, exon 1 of 3) 752 ENSMUSG00000024215.14 ENSMUSG00000024215 ENSMUST00000138970 Spdef protein_coding Interval_70851 chr17 15380369 15381594 + 0 NA Intergenic Intergenic -9150 ENSMUSG00000014773.13 ENSMUSG00000014773 ENSMUST00000143460 Dll1 protein_coding Interval_84821 chr19 17123879 17124163 + 0 NA exon (ENSMUSG00000039126.10, exon 8 of 20) protein_coding-exon (ENSMUSG00000039126.10, exon 8 of 20) -1626 ENSMUSG00000039126.10 ENSMUSG00000039126 ENSMUST00000224117 Prune2 protein_coding Interval_120524 chr4 149144336 149144903 + 0 NA Intergenic Intergenic -1231 ENSMUSG00000080746.3 ENSMUSG00000080746 ENSMUST00000120596 Rpsa-ps12 processed_pseudogene Interval_49930 chr13 118430609 118431054 + 0 NA Intergenic Intergenic -44150 ENSMUSG00000021731.10 ENSMUSG00000021731 ENSMUST00000225170 Mrps30 protein_coding Interval_104608 chr3 68753951 68754868 + 0 NA Intergenic Intergenic 7024 ENSMUSG00000102677.1 ENSMUSG00000102677 ENSMUST00000194463 4930535E02Rik lincRNA Interval_115498 chr4 99508456 99509028 + 0 NA Intergenic Intergenic 11724 ENSMUSG00000080803.1 ENSMUSG00000080803 ENSMUST00000117528 Gm12683 processed_pseudogene Interval_82853 chr18 77501607 77503022 + 0 NA intron (ENSMUSG00000025427.15, intron 1 of 4) protein_coding-intron (ENSMUSG00000025427.15, intron 1 of 7) -11126 ENSMUSG00000117855.1 ENSMUSG00000117855 ENSMUST00000236419 Gm50197 processed_pseudogene Interval_69635 chr16 94765192 94765677 + 0 NA intron (ENSMUSG00000043301.16, intron 3 of 3) protein_coding-intron (ENSMUSG00000043301.16, intron 3 of 4) 43540 ENSMUSG00000116641.1 ENSMUSG00000116641 ENSMUST00000232585 Gm41505 antisense Interval_40174 chr12 102299423 102299654 + 0 NA intron (ENSMUSG00000044456.16, intron 1 of 9) protein_coding-intron (ENSMUSG00000044456.16, intron 1 of 9) 16370 ENSMUSG00000044456.16 ENSMUSG00000044456 ENSMUST00000139686 Rin3 protein_coding Interval_135785 chr6 47314444 47315166 + 0 NA Intergenic Intergenic 118284 ENSMUSG00000107853.1 ENSMUSG00000107853 ENSMUST00000203098 Gm18584 processed_pseudogene Interval_171166 chr9 114907762 114908666 + 0 NA intron (ENSMUSG00000050627.13, intron 5 of 7) protein_coding-intron (ENSMUSG00000050627.13, intron 5 of 6) 25773 ENSMUSG00000050627.13 ENSMUSG00000050627 ENSMUST00000146266 Gpd1l protein_coding Interval_150990 chr7 117429027 117430210 + 0 NA intron (ENSMUSG00000030657.11, intron 1 of 6) protein_coding-intron (ENSMUSG00000030657.11, intron 1 of 11) -45874 ENSMUSG00000030657.11 ENSMUSG00000030657 ENSMUST00000161889 Xylt1 protein_coding Interval_152912 chr7 139692767 139693150 + 0 NA Intergenic Intergenic -26441 ENSMUSG00000056777.5 ENSMUSG00000056777 ENSMUST00000072532 Rpl21-ps13 processed_pseudogene Interval_48254 chr13 97463699 97464260 + 0 NA intron (ENSMUSG00000078952.9, intron 1 of 1) lincRNA-intron (ENSMUSG00000078952.9, intron 1 of 1) -4902 ENSMUSG00000098238.1 ENSMUSG00000098238 ENSMUST00000183250 Gm8756 processed_pseudogene Interval_150964 chr7 116815324 116815494 + 0 NA Intergenic Intergenic 10442 ENSMUSG00000107383.1 ENSMUSG00000107383 ENSMUST00000201488 Gm4366 processed_pseudogene Interval_38096 chr12 75631150 75631432 + 0 NA promoter-TSS (ENSMUSG00000118552.1) protein_coding-promoter-TSS (ENSMUSG00000118552.1) 27 ENSMUSG00000118552.1 ENSMUSG00000118552 ENSMUST00000238938 AC124742.1 protein_coding Interval_163949 chr9 29540065 29540318 + 0 NA intron (ENSMUSG00000059974.10, intron 1 of 2) protein_coding-intron (ENSMUSG00000059974.10, intron 1 of 7) 52319 ENSMUSG00000085638.1 ENSMUSG00000085638 ENSMUST00000141752 Gm15521 sense_intronic Interval_173655 chrX 101521974 101522638 + 0 NA Intergenic Intergenic 3321 ENSMUSG00000081674.1 ENSMUSG00000081674 ENSMUST00000120403 Gm6184 processed_pseudogene Interval_48699 chr13 101631811 101632222 + 0 NA Intergenic Intergenic -25783 ENSMUSG00000099774.1 ENSMUSG00000099774 ENSMUST00000190179 Gm29341 lincRNA Interval_127581 chr5 105565890 105566152 + 0 NA intron (ENSMUSG00000054720.12, intron 1 of 2) protein_coding-intron (ENSMUSG00000054720.12, intron 2 of 3) -14419 ENSMUSG00000085771.1 ENSMUSG00000085771 ENSMUST00000150195 C230066G23Rik sense_intronic Interval_18707 chr10 89486662 89487959 + 0 NA intron (ENSMUSG00000047638.15, intron 3 of 9) protein_coding-intron (ENSMUSG00000047638.15, intron 2 of 8) 46275 ENSMUSG00000047638.15 ENSMUSG00000047638 ENSMUST00000105297 Nr1h4 protein_coding Interval_29591 chr11 85217347 85217590 + 0 NA TTS (ENSMUSG00000080791.1) processed_pseudogene-TTS (ENSMUSG00000080791.1) 871 ENSMUSG00000080791.1 ENSMUSG00000080791 ENSMUST00000119676 Akirin1-ps processed_pseudogene Interval_43951 chr13 38311543 38313172 + 0 NA Intergenic Intergenic -8169 ENSMUSG00000114525.1 ENSMUSG00000114525 ENSMUST00000225912 Gm47990 lincRNA Interval_28555 chr11 76687157 76688289 + 0 NA intron (ENSMUSG00000046275.2, intron 1 of 2) protein_coding-intron (ENSMUSG00000046275.2, intron 1 of 2) 7915 ENSMUSG00000046275.2 ENSMUSG00000046275 ENSMUST00000062024 Trarg1 protein_coding Interval_40866 chr12 108979386 108980408 + 0 NA intron (ENSMUSG00000040877.16, intron 1 of 2) protein_coding-intron (ENSMUSG00000040877.16, intron 3 of 7) 11754 ENSMUSG00000113478.1 ENSMUSG00000113478 ENSMUST00000220743 Gm18405 processed_pseudogene Interval_19913 chr10 111171665 111171849 + 0 NA intron (ENSMUSG00000020189.15, intron 1 of 5) protein_coding-intron (ENSMUSG00000020189.15, intron 1 of 22) -8195 ENSMUSG00000112642.1 ENSMUSG00000112642 ENSMUST00000219788 Gm17849 processed_pseudogene Interval_28367 chr11 75421890 75422904 + 0 NA TTS (ENSMUSG00000085359.1) lincRNA-TTS (ENSMUSG00000085359.1) 943 ENSMUSG00000085359.1 ENSMUSG00000085359 ENSMUST00000125962 Gm12336 lincRNA Interval_149749 chr7 101133341 101133520 + 0 NA intron (ENSMUSG00000030691.15, intron 2 of 6) protein_coding-intron (ENSMUSG00000030691.15, intron 2 of 20) 21625 ENSMUSG00000083121.3 ENSMUSG00000083121 ENSMUST00000119683 Gm6341 processed_pseudogene Interval_130752 chr5 130161915 130162238 + 0 NA Intergenic Intergenic 17152 ENSMUSG00000034110.8 ENSMUSG00000034110 ENSMUST00000144467 Kctd7 protein_coding Interval_101863 chr3 10241695 10242302 + 0 NA exon (ENSMUSG00000102834.2, exon 1 of 1) TEC-exon (ENSMUSG00000102834.2, exon 1 of 1) 186 ENSMUSG00000102834.2 ENSMUSG00000102834 ENSMUST00000194040 1700029B24Rik TEC Interval_768 chr1 10821935 10822446 + 0 NA Intergenic Intergenic 16909 ENSMUSG00000100212.1 ENSMUSG00000100212 ENSMUST00000189483 Gm5522 processed_pseudogene Interval_48725 chr13 102372514 102373165 + 0 NA Intergenic Intergenic -5687 ENSMUSG00000114444.1 ENSMUSG00000114444 ENSMUST00000225142 Gm47008 processed_pseudogene Interval_50359 chr14 12036497 12038084 + 0 NA intron (ENSMUSG00000021745.14, intron 4 of 29) protein_coding-intron (ENSMUSG00000021745.14, intron 4 of 29) -56082 ENSMUSG00000085883.2 ENSMUSG00000085883 ENSMUST00000151564 Gm3848 antisense Interval_97389 chr2 135709832 135710225 + 0 NA intron (ENSMUSG00000039943.16, intron 1 of 2) protein_coding-intron (ENSMUSG00000039943.16, intron 1 of 28) -16874 ENSMUSG00000085709.1 ENSMUSG00000085709 ENSMUST00000152250 Gm14211 lincRNA Interval_74884 chr17 57061994 57062546 + 0 NA promoter-TSS (ENSMUSG00000044279.15) protein_coding-promoter-TSS (ENSMUSG00000044279.15) -13 ENSMUSG00000044279.15 ENSMUSG00000044279 ENSMUST00000163628 Crb3 protein_coding Interval_16848 chr10 69211509 69213877 + 0 NA promoter-TSS (ENSMUSG00000019944.14) protein_coding-promoter-TSS (ENSMUSG00000019944.14) 405 ENSMUSG00000090622.1 ENSMUSG00000090622 ENSMUST00000170048 A930033H14Rik protein_coding Interval_93762 chr2 76686231 76687108 + 0 NA exon (ENSMUSG00000002733.8, exon 4 of 8) protein_coding-exon (ENSMUSG00000002733.8, exon 4 of 8) -3184 ENSMUSG00000002733.8 ENSMUSG00000002733 ENSMUST00000125119 Plekha3 protein_coding Interval_174726 chrX 164183974 164184311 + 0 NA intron (ENSMUSG00000015405.15, intron 11 of 11) protein_coding-intron (ENSMUSG00000015405.15, intron 16 of 17) 21964 ENSMUSG00000015405.15 ENSMUSG00000015405 ENSMUST00000131543 Ace2 protein_coding Interval_161964 chr8 124090365 124090944 + 0 NA intron (ENSMUSG00000092329.1, intron 1 of 15) protein_coding-intron (ENSMUSG00000092329.1, intron 1 of 15) -42242 ENSMUSG00000110704.1 ENSMUSG00000110704 ENSMUST00000212460 Gm45732 antisense Interval_10079 chr1 165660713 165661339 + 0 NA intron (ENSMUSG00000040723.14, intron 2 of 5) protein_coding-intron (ENSMUSG00000040723.14, intron 3 of 6) -16338 ENSMUSG00000104517.1 ENSMUSG00000104517 ENSMUST00000192126 Gm18407 processed_pseudogene Interval_81297 chr18 57609521 57610078 + 0 NA intron (ENSMUSG00000058925.11, intron 5 of 5) protein_coding-intron (ENSMUSG00000058925.11, intron 5 of 6) 28786 ENSMUSG00000118322.1 ENSMUSG00000118322 ENSMUST00000236285 2210409D07Rik antisense Interval_34573 chr12 5258637 5259025 + 0 NA intron (ENSMUSG00000020627.10, intron 1 of 11) protein_coding-intron (ENSMUSG00000020627.10, intron 2 of 13) -22867 ENSMUSG00000112020.1 ENSMUSG00000112020 ENSMUST00000219031 Gm48532 TEC Interval_94430 chr2 91159903 91160175 + 0 NA intron (ENSMUSG00000040687.16, intron 19 of 30) protein_coding-intron (ENSMUSG00000040687.16, intron 20 of 35) -20783 ENSMUSG00000040687.16 ENSMUSG00000040687 ENSMUST00000150517 Madd protein_coding Interval_86605 chr19 42001219 42001462 + 0 NA intron (ENSMUSG00000025171.2, intron 1 of 2) protein_coding-intron (ENSMUSG00000025171.2, intron 1 of 2) -15809 ENSMUSG00000025171.2 ENSMUSG00000025171 ENSMUST00000237817 Ubtd1 protein_coding Interval_98447 chr2 152413696 152415380 + 0 NA exon (ENSMUSG00000074682.4, exon 1 of 1) protein_coding-exon (ENSMUSG00000074682.4, exon 1 of 1) 489 ENSMUSG00000074682.4 ENSMUSG00000074682 ENSMUST00000099207 Zcchc3 protein_coding Interval_19763 chr10 108559496 108559734 + 0 NA intron (ENSMUSG00000035864.14, intron 10 of 11) protein_coding-intron (ENSMUSG00000035864.14, intron 9 of 10) 76965 ENSMUSG00000112065.1 ENSMUSG00000112065 ENSMUST00000217917 Gm47466 processed_pseudogene Interval_5686 chr1 90909283 90910150 + 0 NA Intergenic Intergenic -29453 ENSMUSG00000026303.6 ENSMUSG00000026303 ENSMUST00000136220 Mlph protein_coding Interval_106735 chr3 100189230 100189960 + 0 NA intron (ENSMUSG00000027865.10, intron 8 of 12) protein_coding-intron (ENSMUSG00000027865.10, intron 8 of 13) -11092 ENSMUSG00000027865.10 ENSMUSG00000027865 ENSMUST00000200036 Gdap2 protein_coding Interval_64397 chr16 11093477 11093914 + 0 NA intron (ENSMUSG00000022498.16, intron 5 of 6) protein_coding-intron (ENSMUSG00000022498.16, intron 6 of 11) -27573 ENSMUSG00000022500.15 ENSMUSG00000022500 ENSMUST00000230709 Litaf protein_coding Interval_143586 chr7 12979951 12980571 + 0 NA exon (ENSMUSG00000033961.16, exon 2 of 4) protein_coding-exon (ENSMUSG00000033961.16, exon 2 of 4) 2368 ENSMUSG00000033961.16 ENSMUSG00000033961 ENSMUST00000128427 Zfp446 protein_coding Interval_110424 chr3 157984570 157984990 + 0 NA intron (ENSMUSG00000039988.14, intron 5 of 11) protein_coding-intron (ENSMUSG00000039988.14, intron 6 of 12) -3741 ENSMUSG00000039988.14 ENSMUSG00000039988 ENSMUST00000199574 Ankrd13c protein_coding Interval_36330 chr12 41352903 41353787 + 0 NA intron (ENSMUSG00000056899.10, intron 3 of 5) protein_coding-intron (ENSMUSG00000056899.10, intron 4 of 6) -4773 ENSMUSG00000077613.1 ENSMUSG00000077613 ENSMUST00000104425 Gm25497 snoRNA Interval_33596 chr11 117411675 117412140 + 0 NA Intergenic Intergenic -2482 ENSMUSG00000086588.1 ENSMUSG00000086588 ENSMUST00000124901 Gm11729 lincRNA Interval_66578 chr16 35282553 35282795 + 0 NA intron (ENSMUSG00000022840.9, intron 11 of 20) protein_coding-intron (ENSMUSG00000022840.9, intron 11 of 20) -2080 ENSMUSG00000116766.1 ENSMUSG00000116766 ENSMUST00000231960 Gm49702 TEC Interval_70579 chr17 12115135 12115477 + 0 NA Intergenic Intergenic -4023 ENSMUSG00000023827.8 ENSMUSG00000023827 ENSMUST00000167905 Agpat4 protein_coding Interval_16694 chr10 67069034 67070656 + 0 NA intron (ENSMUSG00000019873.8, intron 1 of 8) protein_coding-intron (ENSMUSG00000019873.8, intron 1 of 7) -32523 ENSMUSG00000019873.8 ENSMUSG00000019873 ENSMUST00000219431 Reep3 protein_coding Interval_27270 chr11 65131822 65132371 + 0 NA intron (ENSMUSG00000033389.16, intron 1 of 20) protein_coding-intron (ENSMUSG00000033389.16, intron 1 of 20) 27795 ENSMUSG00000020548.10 ENSMUSG00000020548 ENSMUST00000108696 1700086D15Rik protein_coding Interval_47569 chr13 89194103 89194366 + 0 NA intron (ENSMUSG00000034488.14, intron 9 of 10) protein_coding-intron (ENSMUSG00000034488.14, intron 8 of 9) 372746 ENSMUSG00000034488.14 ENSMUSG00000034488 ENSMUST00000043111 Edil3 protein_coding Interval_5202 chr1 86434180 86435539 + 0 NA Intergenic Intergenic 8530 ENSMUSG00000036574.5 ENSMUSG00000036574 ENSMUST00000046004 Tex44 protein_coding Interval_53511 chr14 57961482 57962756 + 0 NA intron (ENSMUSG00000021973.9, intron 2 of 7) protein_coding-intron (ENSMUSG00000021973.9, intron 2 of 11) -37265 ENSMUSG00000097303.2 ENSMUSG00000097303 ENSMUST00000224786 3110083C13Rik bidirectional_promoter_lncRNA Interval_70837 chr17 15214046 15214351 + 0 NA Intergenic Intergenic 33719 ENSMUSG00000097624.2 ENSMUSG00000097624 ENSMUST00000181658 Gm5091 lincRNA Interval_70152 chr17 5846285 5846554 + 0 NA intron (ENSMUSG00000002365.10, intron 1 of 17) protein_coding-intron (ENSMUSG00000002365.10, intron 1 of 17) 5067 ENSMUSG00000002365.10 ENSMUSG00000002365 ENSMUST00000231803 Snx9 protein_coding Interval_27842 chr11 70357681 70357953 + 0 NA promoter-TSS (ENSMUSG00000082145.1) processed_pseudogene-promoter-TSS (ENSMUSG00000082145.1) -321 ENSMUSG00000082145.1 ENSMUSG00000082145 ENSMUST00000120351 Gm12312 processed_pseudogene Interval_31300 chr11 99439147 99439374 + 0 NA Intergenic Intergenic -1110 ENSMUSG00000035775.2 ENSMUSG00000035775 ENSMUST00000017743 Krt20 protein_coding Interval_145278 chr7 31114696 31115759 + 0 NA promoter-TSS (ENSMUSG00000001249.14) protein_coding-promoter-TSS (ENSMUSG00000001249.14) 11617 ENSMUSG00000019194.15 ENSMUSG00000019194 ENSMUST00000211923 Scn1b protein_coding Interval_48632 chr13 100748745 100749419 + 0 NA Intergenic Intergenic -4969 ENSMUSG00000061474.11 ENSMUSG00000061474 ENSMUST00000150113 Mrps36 protein_coding Interval_28720 chr11 77914444 77916035 + 0 NA exon (ENSMUSG00000055045.5, exon 3 of 3) lincRNA-exon (ENSMUSG00000055045.5, exon 3 of 3) 14049 ENSMUSG00000055045.5 ENSMUSG00000055045 ENSMUST00000132487 Gm11190 lincRNA Interval_46547 chr13 67041548 67042067 + 0 NA exon (ENSMUSG00000090641.2, exon 4 of 4) protein_coding-exon (ENSMUSG00000090641.2, exon 4 of 4) -8928 ENSMUSG00000114834.1 ENSMUSG00000114834 ENSMUST00000223867 Gm48705 processed_pseudogene Interval_14589 chr10 36757867 36758088 + 0 NA intron (ENSMUSG00000044499.11, intron 3 of 4) protein_coding-intron (ENSMUSG00000044499.11, intron 4 of 5) 17954 ENSMUSG00000088423.1 ENSMUSG00000088423 ENSMUST00000157798 Gm22554 snoRNA Interval_150429 chr7 110525096 110525323 + 0 NA intron (ENSMUSG00000038371.15, intron 2 of 18) protein_coding-intron (ENSMUSG00000038371.15, intron 2 of 40) -1583 ENSMUSG00000060777.4 ENSMUSG00000060777 ENSMUST00000167650 Gm10087 processed_pseudogene Interval_30736 chr11 96193674 96194532 + 0 NA promoter-TSS (ENSMUSG00000049604.3) protein_coding-promoter-TSS (ENSMUSG00000049604.3) -213 ENSMUSG00000049604.3 ENSMUSG00000049604 ENSMUST00000062709 Hoxb13 protein_coding Interval_56725 chr14 121665815 121666325 + 0 NA intron (ENSMUSG00000025558.19, intron 3 of 55) protein_coding-intron (ENSMUSG00000025558.19, intron 3 of 53) 72791 ENSMUSG00000025558.19 ENSMUSG00000025558 ENSMUST00000238406 Dock9 protein_coding Interval_91753 chr2 49272506 49272921 + 0 NA TTS (ENSMUSG00000036792.12) protein_coding-TTS (ENSMUSG00000036792.12) 26543 ENSMUSG00000036792.12 ENSMUSG00000036792 ENSMUST00000196831 Mbd5 protein_coding Interval_67248 chr16 44745533 44746810 + 0 NA exon (ENSMUSG00000022668.10, exon 1 of 5) protein_coding-exon (ENSMUSG00000022668.10, exon 1 of 5) 192 ENSMUSG00000022668.10 ENSMUSG00000022668 ENSMUST00000162479 Gtpbp8 protein_coding Interval_3206 chr1 54826429 54827627 + 0 NA intron (ENSMUSG00000052331.14, intron 2 of 7) protein_coding-intron (ENSMUSG00000052331.14, intron 2 of 27) 57810 ENSMUSG00000089245.1 ENSMUSG00000089245 ENSMUST00000158620 Gm24053 miRNA Interval_453 chr1 5497158 5497431 + 0 NA Intergenic Intergenic -91199 ENSMUSG00000025905.14 ENSMUSG00000025905 ENSMUST00000159083 Oprk1 protein_coding Interval_63616 chr15 102370148 102371877 + 0 NA Intergenic Intergenic -2868 ENSMUSG00000088286.1 ENSMUSG00000088286 ENSMUST00000157661 Gm23590 snRNA Interval_20292 chr10 116697277 116697907 + 0 NA Intergenic Intergenic 23001 ENSMUSG00000097104.1 ENSMUSG00000097104 ENSMUST00000181656 Gm26579 lincRNA Interval_71452 chr17 23834368 23835469 + 0 NA intron (ENSMUSG00000049620.9, intron 3 of 3) protein_coding-intron (ENSMUSG00000049620.9, intron 3 of 5) 1138 ENSMUSG00000049620.9 ENSMUSG00000049620 ENSMUST00000164140 Prss33 protein_coding Interval_101704 chr3 9036797 9038731 + 0 NA Intergenic Intergenic 9728 ENSMUSG00000103461.1 ENSMUSG00000103461 ENSMUST00000193974 Gm37616 processed_pseudogene Interval_53250 chr14 55582069 55582496 + 0 NA TTS (ENSMUSG00000022216.17) protein_coding-TTS (ENSMUSG00000022216.17) 2929 ENSMUSG00000022217.14 ENSMUSG00000022217 ENSMUST00000174618 Emc9 protein_coding Interval_58289 chr15 31687515 31687913 + 0 NA Intergenic Intergenic -32148 ENSMUSG00000115188.1 ENSMUSG00000115188 ENSMUST00000227734 Gm46522 processed_pseudogene Interval_32656 chr11 109459772 109460848 + 0 NA intron (ENSMUSG00000041920.14, intron 2 of 2) protein_coding-intron (ENSMUSG00000041920.14, intron 2 of 2) 6121 ENSMUSG00000080530.1 ENSMUSG00000080530 ENSMUST00000116880 Gm25540 miRNA Interval_89088 chr2 16110711 16111445 + 0 NA intron (ENSMUSG00000075520.5, intron 32 of 38) protein_coding-intron (ENSMUSG00000075520.5, intron 32 of 38) -87653 ENSMUSG00000103865.1 ENSMUSG00000103865 ENSMUST00000193596 Gm37416 TEC Interval_91247 chr2 36370506 36370936 + 0 NA Intergenic Intergenic -2857 ENSMUSG00000068950.3 ENSMUSG00000068950 ENSMUST00000091006 Olfr338 protein_coding Interval_112641 chr4 43741662 43743316 + 0 NA intron (ENSMUSG00000028475.9, intron 2 of 5) protein_coding-intron (ENSMUSG00000028475.9, intron 2 of 5) 10230 ENSMUSG00000028475.9 ENSMUSG00000028475 ENSMUST00000142309 Spaar protein_coding Interval_122358 chr5 21675001 21676272 + 0 NA exon (ENSMUSG00000044968.16, exon 3 of 5) protein_coding-exon (ENSMUSG00000044968.16, exon 3 of 5) -13905 ENSMUSG00000081242.1 ENSMUSG00000081242 ENSMUST00000120619 Gm15719 processed_pseudogene Interval_15729 chr10 54916125 54916348 + 0 NA Intergenic Intergenic -140957 ENSMUSG00000112575.1 ENSMUSG00000112575 ENSMUST00000220306 Gm31849 processed_pseudogene Interval_124867 chr5 57714824 57720168 + 0 NA promoter-TSS (ENSMUSG00000029108.14) protein_coding-promoter-TSS (ENSMUSG00000029108.14) 2705 ENSMUSG00000097216.3 ENSMUSG00000097216 ENSMUST00000193156 4932441J04Rik processed_transcript Interval_43593 chr13 33956613 33957409 + 0 NA intron (ENSMUSG00000060147.15, intron 2 of 3) protein_coding-intron (ENSMUSG00000060147.15, intron 2 of 7) -7995 ENSMUSG00000046949.16 ENSMUSG00000046949 ENSMUST00000222740 Nqo2 protein_coding Interval_91583 chr2 43931194 43932191 + 0 NA intron (ENSMUSG00000049744.15, intron 6 of 14) protein_coding-intron (ENSMUSG00000049744.15, intron 6 of 13) 133632 ENSMUSG00000085089.1 ENSMUSG00000085089 ENSMUST00000139948 Arhgap15os antisense Interval_27468 chr11 68057921 68058170 + 0 NA intron (ENSMUSG00000020903.13, intron 5 of 6) protein_coding-intron (ENSMUSG00000020903.13, intron 6 of 7) 4710 ENSMUSG00000089599.1 ENSMUSG00000089599 ENSMUST00000158974 Gm26157 rRNA Interval_146805 chr7 51957443 51958670 + 0 NA intron (ENSMUSG00000030498.15, intron 6 of 6) protein_coding-intron (ENSMUSG00000030498.15, intron 7 of 7) 47642 ENSMUSG00000074093.4 ENSMUSG00000074093 ENSMUST00000207457 Svip protein_coding Interval_35610 chr12 25441293 25441819 + 0 NA intron (ENSMUSG00000113669.1, intron 6 of 7) lincRNA-intron (ENSMUSG00000113669.1, intron 6 of 7) 123371 ENSMUSG00000113669.1 ENSMUSG00000113669 ENSMUST00000221270 Gm36723 lincRNA Interval_8071 chr1 135552815 135555035 + 0 NA intron (ENSMUSG00000009418.16, intron 4 of 30) protein_coding-intron (ENSMUSG00000009418.16, intron 1 of 29) -28587 ENSMUSG00000104524.1 ENSMUSG00000104524 ENSMUST00000192904 Gm37333 TEC Interval_77787 chr18 3495548 3496025 + 0 NA Intergenic Intergenic 11568 ENSMUSG00000117469.1 ENSMUSG00000117469 ENSMUST00000234804 Gm50089 processed_pseudogene Interval_101459 chr2 181555087 181555291 + 0 NA TTS (ENSMUSG00000000826.16) protein_coding-TTS (ENSMUSG00000000826.16) 19287 ENSMUSG00000089917.7 ENSMUSG00000089917 ENSMUST00000131949 Uckl1 protein_coding Interval_93156 chr2 70704222 70705090 + 0 NA intron (ENSMUSG00000014959.12, intron 8 of 9) protein_coding-intron (ENSMUSG00000014959.12, intron 8 of 9) 13248 ENSMUSG00000041997.16 ENSMUSG00000041997 ENSMUST00000124629 Tlk1 protein_coding Interval_73887 chr17 45236746 45237606 + 0 NA Intergenic Intergenic 27210 ENSMUSG00000096425.1 ENSMUSG00000096425 ENSMUST00000178626 Gm24979 miRNA Interval_83777 chr19 4636105 4636438 + 0 NA intron (ENSMUSG00000071691.11, intron 13 of 15) protein_coding-intron (ENSMUSG00000071691.11, intron 13 of 14) -10020 ENSMUSG00000071691.11 ENSMUSG00000071691 ENSMUST00000096325 Gm960 protein_coding Interval_115184 chr4 93703411 93704207 + 0 NA Intergenic Intergenic -32739 ENSMUSG00000084833.1 ENSMUSG00000084833 ENSMUST00000137509 Gm12649 lincRNA Interval_124707 chr5 53474129 53474784 + 0 NA intron (ENSMUSG00000039191.12, intron 1 of 6) protein_coding-intron (ENSMUSG00000039191.12, intron 1 of 6) 48275 ENSMUSG00000106807.1 ENSMUSG00000106807 ENSMUST00000200950 Gm10441 antisense Interval_32398 chr11 107341072 107341500 + 0 NA intron (ENSMUSG00000086298.1, intron 1 of 1) protein_coding-intron (ENSMUSG00000040430.18, intron 1 of 9) 3236 ENSMUSG00000086298.1 ENSMUSG00000086298 ENSMUST00000154414 Gm11716 antisense Interval_49081 chr13 107810529 107811355 + 0 NA intron (ENSMUSG00000032846.10, intron 1 of 12) protein_coding-intron (ENSMUSG00000032846.10, intron 2 of 14) 18338 ENSMUSG00000093334.2 ENSMUSG00000093334 ENSMUST00000175593 Gm22118 miRNA Interval_98691 chr2 154337927 154339859 + 0 NA intron (ENSMUSG00000027487.11, intron 14 of 14) protein_coding-intron (ENSMUSG00000027487.11, intron 13 of 13) 15451 ENSMUSG00000027487.11 ENSMUSG00000027487 ENSMUST00000137918 Cdk5rap1 protein_coding Interval_95879 chr2 117905235 117905707 + 0 NA intron (ENSMUSG00000086221.1, intron 5 of 5) processed_transcript-intron (ENSMUSG00000087203.7, intron 8 of 9) 83543 ENSMUSG00000086221.1 ENSMUSG00000086221 ENSMUST00000149239 4930412B13Rik lincRNA Interval_39517 chr12 89180117 89181903 + 0 NA intron (ENSMUSG00000066392.12, intron 2 of 19) protein_coding-intron (ENSMUSG00000066392.12, intron 2 of 19) 74351 ENSMUSG00000103136.1 ENSMUSG00000103136 ENSMUST00000194420 Gm37980 TEC Interval_34870 chr12 12866690 12867132 + 0 NA intron (ENSMUSG00000113363.1, intron 1 of 4) lincRNA-intron (ENSMUSG00000113363.1, intron 1 of 4) 1341 ENSMUSG00000113363.1 ENSMUSG00000113363 ENSMUST00000221441 Gm48187 lincRNA Interval_44063 chr13 40658381 40658914 + 0 NA Intergenic Intergenic -13998 ENSMUSG00000114322.1 ENSMUSG00000114322 ENSMUST00000225346 Gm47041 TEC Interval_89230 chr2 18205088 18205471 + 0 NA intron (ENSMUSG00000026743.16, intron 17 of 22) protein_coding-intron (ENSMUSG00000026743.16, intron 17 of 22) 11623 ENSMUSG00000026740.12 ENSMUSG00000026740 ENSMUST00000165793 Dnajc1 protein_coding Interval_99839 chr2 165239639 165240154 + 0 NA Intergenic Intergenic 30280 ENSMUSG00000087800.1 ENSMUSG00000087800 ENSMUST00000157175 Gm25569 snoRNA Interval_105573 chr3 87838653 87839128 + 0 NA Intergenic Intergenic -8121 ENSMUSG00000028071.12 ENSMUSG00000028071 ENSMUST00000194639 Sh2d2a protein_coding Interval_65528 chr16 23091406 23091888 + 0 NA Intergenic Intergenic -1296 ENSMUSG00000116625.1 ENSMUSG00000116625 ENSMUST00000231398 Gm8134 processed_pseudogene Interval_64936 chr16 17364925 17365294 + 0 NA exon (ENSMUSG00000041720.14, exon 8 of 8) protein_coding-exon (ENSMUSG00000041720.14, exon 8 of 8) -23097 ENSMUSG00000065331.1 ENSMUSG00000065331 ENSMUST00000083397 Gm24927 snRNA Interval_92228 chr2 57181504 57183287 + 0 NA promoter-TSS (ENSMUSG00000084938.1) processed_transcript-promoter-TSS (ENSMUSG00000084938.1) 564 ENSMUSG00000086396.1 ENSMUSG00000086396 ENSMUST00000123210 4930555B11Rik processed_transcript Interval_136425 chr6 54346523 54346767 + 0 NA intron (ENSMUSG00000073067.10, intron 3 of 13) processed_transcript-intron (ENSMUSG00000073067.10, intron 3 of 13) -19304 ENSMUSG00000073067.10 ENSMUSG00000073067 ENSMUST00000135612 9130019P16Rik processed_transcript Interval_119317 chr4 136841054 136841692 + 0 NA Intergenic Intergenic 44814 ENSMUSG00000036905.8 ENSMUSG00000036905 ENSMUST00000046384 C1qb protein_coding Interval_5713 chr1 91144797 91145508 + 0 NA promoter-TSS (ENSMUSG00000070732.2) protein_coding-promoter-TSS (ENSMUSG00000070732.2) 63 ENSMUSG00000070732.2 ENSMUSG00000070732 ENSMUST00000185229 Rbm44 protein_coding Interval_102718 chr3 30563550 30564020 + 0 NA intron (ENSMUSG00000102256.1, intron 1 of 3) lincRNA-intron (ENSMUSG00000102256.1, intron 1 of 3) 458 ENSMUSG00000102256.1 ENSMUSG00000102256 ENSMUST00000191792 Gm38258 lincRNA Interval_80592 chr18 44471838 44473176 + 0 NA intron (ENSMUSG00000071856.10, intron 9 of 16) protein_coding-intron (ENSMUSG00000071856.10, intron 11 of 18) 92005 ENSMUSG00000024472.9 ENSMUSG00000024472 ENSMUST00000025350 Dcp2 protein_coding Interval_31568 chr11 101424026 101425737 + 0 NA promoter-TSS (ENSMUSG00000035007.5) protein_coding-promoter-TSS (ENSMUSG00000035007.5) -85 ENSMUSG00000097239.7 ENSMUSG00000097239 ENSMUST00000107259 Gm27029 protein_coding Interval_71743 chr17 25819016 25820066 + 0 NA TTS (ENSMUSG00000025738.8) protein_coding-TTS (ENSMUSG00000025738.8) 3222 ENSMUSG00000025738.8 ENSMUSG00000025738 ENSMUST00000235694 Fbxl16 protein_coding Interval_156876 chr8 61391986 61392375 + 0 NA intron (ENSMUSG00000031642.9, intron 11 of 11) protein_coding-intron (ENSMUSG00000031642.9, intron 11 of 11) -10793 ENSMUSG00000109610.1 ENSMUSG00000109610 ENSMUST00000210343 Gm7432 processed_pseudogene Interval_11909 chr1 186976786 186977288 + 0 NA Intergenic Intergenic -9434 ENSMUSG00000104312.1 ENSMUSG00000104312 ENSMUST00000191895 Gm37912 antisense Interval_5798 chr1 91922565 91922896 + 0 NA Intergenic Intergenic 6470 ENSMUSG00000102745.1 ENSMUSG00000102745 ENSMUST00000193764 Gm37600 TEC Interval_39758 chr12 97402922 97404042 + 0 NA Intergenic Intergenic -32369 ENSMUSG00000088448.1 ENSMUSG00000088448 ENSMUST00000157823 Gm23558 rRNA Interval_63811 chr16 3535695 3536141 + 0 NA promoter-TSS (ENSMUSG00000088225.1) snoRNA-promoter-TSS (ENSMUSG00000088225.1) -307 ENSMUSG00000088225.1 ENSMUSG00000088225 ENSMUST00000157600 Gm22598 snoRNA Interval_137747 chr6 82052207 82052419 + 0 NA promoter-TSS (ENSMUSG00000035104.14) protein_coding-promoter-TSS (ENSMUSG00000035104.14) 268 ENSMUSG00000087136.1 ENSMUSG00000087136 ENSMUST00000145950 Gm15864 antisense Interval_174632 chrX 160585994 160586275 + 0 NA intron (ENSMUSG00000031295.13, intron 24 of 27) protein_coding-intron (ENSMUSG00000031295.13, intron 29 of 32) -53089 ENSMUSG00000085695.1 ENSMUSG00000085695 ENSMUST00000151101 Gm15243 antisense Interval_52274 chr14 41298826 41299568 + 0 NA Intergenic Intergenic 10446 ENSMUSG00000091808.1 ENSMUSG00000091808 ENSMUST00000171502 Gm9671 unprocessed_pseudogene Interval_66398 chr16 33609727 33610624 + 0 NA intron (ENSMUSG00000035506.16, intron 7 of 11) protein_coding-intron (ENSMUSG00000035506.16, intron 7 of 12) -6215 ENSMUSG00000035506.16 ENSMUSG00000035506 ENSMUST00000149291 Slc12a8 protein_coding Interval_77922 chr18 5591126 5593433 + 0 NA promoter-TSS (ENSMUSG00000063087.15) processed_transcript-promoter-TSS (ENSMUSG00000063087.15) -33 ENSMUSG00000063087.15 ENSMUSG00000063087 ENSMUST00000161383 Gm10125 processed_transcript Interval_81620 chr18 62192917 62193229 + 0 NA Intergenic Intergenic 12947 ENSMUSG00000054589.1 ENSMUSG00000054589 ENSMUST00000067743 Gm9949 lincRNA Interval_98650 chr2 153827299 153828160 + 0 NA intron (ENSMUSG00000044083.12, intron 21 of 27) protein_coding-intron (ENSMUSG00000044083.12, intron 21 of 27) 1558 ENSMUSG00000083097.3 ENSMUSG00000083097 ENSMUST00000118786 Gm14494 processed_pseudogene Interval_141521 chr6 128853873 128854808 + 0 NA intron (ENSMUSG00000090164.8, intron 2 of 2) protein_coding-intron (ENSMUSG00000090164.8, intron 2 of 2) -7381 ENSMUSG00000108095.1 ENSMUSG00000108095 ENSMUST00000203350 Gm44067 lincRNA Interval_147567 chr7 68306127 68306437 + 0 NA intron (ENSMUSG00000074071.11, intron 3 of 8) protein_coding-intron (ENSMUSG00000074071.11, intron 3 of 8) 10750 ENSMUSG00000109453.1 ENSMUSG00000109453 ENSMUST00000207912 4930405G09Rik TEC Interval_136396 chr6 54091112 54091957 + 0 NA intron (ENSMUSG00000004633.17, intron 1 of 4) protein_coding-intron (ENSMUSG00000004633.17, intron 1 of 12) 59403 ENSMUSG00000087670.1 ENSMUSG00000087670 ENSMUST00000138767 9530036M11Rik antisense Interval_103625 chr3 51275996 51277953 + 0 NA exon (ENSMUSG00000087440.2, exon 1 of 1) TEC-exon (ENSMUSG00000087440.2, exon 1 of 1) 215 ENSMUSG00000087440.2 ENSMUSG00000087440 ENSMUST00000139771 4930577N17Rik TEC Interval_54781 chr14 75015712 75017011 + 0 NA intron (ENSMUSG00000034959.8, intron 1 of 13) protein_coding-intron (ENSMUSG00000034959.8, intron 1 of 13) -20261 ENSMUSG00000034959.8 ENSMUSG00000034959 ENSMUST00000228689 Rubcnl protein_coding Interval_57325 chr15 8748953 8749945 + 0 NA Intergenic Intergenic -39040 ENSMUSG00000005360.14 ENSMUSG00000005360 ENSMUST00000126747 Slc1a3 protein_coding Interval_7686 chr1 133045568 133046959 + 0 NA exon (ENSMUSG00000026447.17, exon 1 of 33) protein_coding-exon (ENSMUSG00000026447.17, exon 1 of 33) 20462 ENSMUSG00000100228.1 ENSMUSG00000100228 ENSMUST00000186115 Gm29257 processed_pseudogene Interval_138202 chr6 86203117 86203322 + 0 NA intron (ENSMUSG00000029999.14, intron 1 of 3) protein_coding-intron (ENSMUSG00000029999.14, intron 1 of 5) -8375 ENSMUSG00000029999.14 ENSMUSG00000029999 ENSMUST00000194449 Tgfa protein_coding Interval_160829 chr8 113140393 113140842 + 0 NA Intergenic Intergenic 73355 ENSMUSG00000110541.1 ENSMUSG00000110541 ENSMUST00000212238 Gm10280 lincRNA Interval_52679 chr14 48523878 48524138 + 0 NA promoter-TSS (ENSMUSG00000115756.1) processed_transcript-promoter-TSS (ENSMUSG00000115756.1) 375 ENSMUSG00000115756.1 ENSMUSG00000115756 ENSMUST00000226673 Gm49519 processed_transcript Interval_97746 chr2 143712896 143713398 + 0 NA intron (ENSMUSG00000027419.9, intron 5 of 11) protein_coding-intron (ENSMUSG00000027419.9, intron 5 of 11) 82818 ENSMUSG00000087115.7 ENSMUSG00000087115 ENSMUST00000156362 Pcsk2os2 antisense Interval_48434 chr13 99009059 99009424 + 0 NA intron (ENSMUSG00000114414.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000114414.1, intron 1 of 1) 2142 ENSMUSG00000114414.1 ENSMUSG00000114414 ENSMUST00000223781 A930014D07Rik lincRNA Interval_7213 chr1 127868413 127869290 + 0 NA promoter-TSS (ENSMUSG00000036104.12) protein_coding-promoter-TSS (ENSMUSG00000036104.12) 39 ENSMUSG00000036104.12 ENSMUSG00000036104 ENSMUST00000131884 Rab3gap1 protein_coding Interval_155939 chr8 41153613 41154118 + 0 NA Intergenic Intergenic 61288 ENSMUSG00000031594.9 ENSMUSG00000031594 ENSMUST00000134510 Fgl1 protein_coding Interval_46710 chr13 69533487 69535474 + 0 NA promoter-TSS (ENSMUSG00000034575.13) protein_coding-promoter-TSS (ENSMUSG00000034575.13) -2048 ENSMUSG00000034575.13 ENSMUSG00000034575 ENSMUST00000222497 Tent4a protein_coding Interval_15534 chr10 50881612 50882063 + 0 NA Intergenic Intergenic -12917 ENSMUSG00000019913.4 ENSMUSG00000019913 ENSMUST00000020071 Sim1 protein_coding Interval_90915 chr2 33458166 33458629 + 0 NA intron (ENSMUSG00000026788.13, intron 1 of 1) protein_coding-intron (ENSMUSG00000026788.13, intron 2 of 2) 6685 ENSMUSG00000026788.13 ENSMUSG00000026788 ENSMUST00000126442 Zbtb43 protein_coding Interval_109161 chr3 137153781 137154708 + 0 NA Intergenic Intergenic 86352 ENSMUSG00000065906.1 ENSMUSG00000065906 ENSMUST00000083972 Gm26107 snRNA Interval_79456 chr18 32049798 32050314 + 0 NA Intergenic Intergenic 18967 ENSMUSG00000085300.1 ENSMUSG00000085300 ENSMUST00000146065 Gm16345 processed_pseudogene Interval_115610 chr4 101378432 101379097 + 0 NA intron (ENSMUSG00000087361.7, intron 3 of 3) lincRNA-intron (ENSMUSG00000087361.7, intron 3 of 3) 12113 ENSMUSG00000087361.7 ENSMUSG00000087361 ENSMUST00000142581 0610043K17Rik lincRNA Interval_166019 chr9 55517877 55518536 + 0 NA promoter-TSS (ENSMUSG00000110926.1) processed_pseudogene-promoter-TSS (ENSMUSG00000110926.1) -363 ENSMUSG00000110926.1 ENSMUSG00000110926 ENSMUST00000217638 Gm5917 processed_pseudogene Interval_50417 chr14 12763405 12763689 + 0 NA intron (ENSMUSG00000054423.14, intron 1 of 28) protein_coding-intron (ENSMUSG00000054423.14, intron 1 of 28) 7003 ENSMUSG00000114626.1 ENSMUSG00000114626 ENSMUST00000225480 Gm48266 TEC Interval_35236 chr12 18609522 18611078 + 0 NA promoter-TSS (ENSMUSG00000113724.1) processed_pseudogene-promoter-TSS (ENSMUSG00000113724.1) -84 ENSMUSG00000113724.1 ENSMUSG00000113724 ENSMUST00000220919 Gm48398 processed_pseudogene Interval_53367 chr14 56699060 56699546 + 0 NA promoter-TSS (ENSMUSG00000097743.1) lincRNA-promoter-TSS (ENSMUSG00000097743.1) 58 ENSMUSG00000097743.1 ENSMUSG00000097743 ENSMUST00000180682 Gm16973 lincRNA Interval_83114 chr18 81491267 81491528 + 0 NA intron (ENSMUSG00000118300.1, intron 2 of 2) lincRNA-intron (ENSMUSG00000118300.1, intron 2 of 2) 11040 ENSMUSG00000118300.1 ENSMUSG00000118300 ENSMUST00000237597 Gm50412 lincRNA Interval_100184 chr2 167529831 167530850 + 0 NA Intergenic Intergenic 5102 ENSMUSG00000082687.1 ENSMUSG00000082687 ENSMUST00000120814 Gm11474 processed_pseudogene Interval_89323 chr2 19333514 19334131 + 0 NA Intergenic Intergenic -11016 ENSMUSG00000087674.7 ENSMUSG00000087674 ENSMUST00000136456 4930447M23Rik lincRNA Interval_50715 chr14 18497294 18497527 + 0 NA Intergenic Intergenic -33953 ENSMUSG00000035129.6 ENSMUSG00000035129 ENSMUST00000038304 Gm6781 processed_pseudogene Interval_162044 chr8 124681773 124682239 + 0 NA intron (ENSMUSG00000037300.19, intron 11 of 18) protein_coding-intron (ENSMUSG00000037300.19, intron 11 of 17) -18637 ENSMUSG00000031983.7 ENSMUSG00000031983 ENSMUST00000034464 2310022B05Rik protein_coding Interval_129253 chr5 118458861 118460047 + 0 NA Intergenic Intergenic -27513 ENSMUSG00000082365.2 ENSMUSG00000082365 ENSMUST00000119191 Gm15754 transcribed_processed_pseudogene Interval_119458 chr4 137730260 137730532 + 0 NA TTS (ENSMUSG00000041351.16) protein_coding-TTS (ENSMUSG00000041351.16) -23790 ENSMUSG00000087476.1 ENSMUSG00000087476 ENSMUST00000135358 Rap1gapos antisense Interval_35058 chr12 16907368 16909022 + 0 NA intron (ENSMUSG00000020580.10, intron 1 of 32) protein_coding-intron (ENSMUSG00000020580.10, intron 1 of 32) 14110 ENSMUSG00000113202.1 ENSMUSG00000113202 ENSMUST00000222207 Gm48291 processed_pseudogene Interval_41089 chr12 111105886 111106325 + 0 NA intron (ENSMUSG00000037896.17, intron 8 of 11) protein_coding-intron (ENSMUSG00000037896.17, intron 8 of 11) 14905 ENSMUSG00000113200.1 ENSMUSG00000113200 ENSMUST00000221105 Gm48632 TEC Interval_49237 chr13 109706751 109707573 + 0 NA intron (ENSMUSG00000021699.17, intron 1 of 4) protein_coding-intron (ENSMUSG00000021699.17, intron 1 of 14) -196647 ENSMUSG00000084651.1 ENSMUSG00000084651 ENSMUST00000122702 Mir1904 miRNA Interval_105354 chr3 85378043 85379127 + 0 NA intron (ENSMUSG00000102805.5, intron 3 of 9) protein_coding-intron (ENSMUSG00000102805.5, intron 3 of 9) 49543 ENSMUSG00000105012.1 ENSMUSG00000105012 ENSMUST00000200057 Gm42813 lincRNA Interval_59815 chr15 59525124 59525697 + 0 NA intron (ENSMUSG00000059586.10, intron 5 of 7) protein_coding-intron (ENSMUSG00000059586.10, intron 4 of 6) -93180 ENSMUSG00000115896.1 ENSMUSG00000115896 ENSMUST00000229684 Gm36677 lincRNA Interval_61151 chr15 79511269 79512288 + 0 NA exon (ENSMUSG00000116243.1, exon 1 of 1) TEC-exon (ENSMUSG00000116243.1, exon 1 of 1) 1453 ENSMUSG00000116243.1 ENSMUSG00000116243 ENSMUST00000230717 Gm49552 TEC Interval_59362 chr15 51911830 51912205 + 0 NA Intergenic Intergenic 14930 ENSMUSG00000115616.1 ENSMUSG00000115616 ENSMUST00000226818 Gm48923 lincRNA Interval_62495 chr15 93484259 93484718 + 0 NA intron (ENSMUSG00000036167.16, intron 7 of 7) protein_coding-intron (ENSMUSG00000036167.16, intron 9 of 9) 35035 ENSMUSG00000036158.12 ENSMUSG00000036158 ENSMUST00000048982 Prickle1 protein_coding Interval_129212 chr5 118229824 118231249 + 0 NA intron (ENSMUSG00000032850.16, intron 6 of 10) protein_coding-intron (ENSMUSG00000032850.16, intron 7 of 11) 14458 ENSMUSG00000032850.16 ENSMUSG00000032850 ENSMUST00000133372 Rnft2 protein_coding Interval_8982 chr1 152887765 152888088 + 0 NA intron (ENSMUSG00000042772.15, intron 1 of 22) protein_coding-intron (ENSMUSG00000042772.15, intron 1 of 21) -7628 ENSMUSG00000100394.1 ENSMUSG00000100394 ENSMUST00000185888 Gm28791 sense_intronic Interval_20885 chr10 121739478 121740532 + 0 NA promoter-TSS (ENSMUSG00000053684.8) protein_coding-promoter-TSS (ENSMUSG00000053684.8) -10875 ENSMUSG00000053684.8 ENSMUSG00000053684 ENSMUST00000138630 BC048403 protein_coding Interval_121596 chr5 3738121 3738675 + 0 NA intron (ENSMUSG00000040351.11, intron 5 of 18) protein_coding-intron (ENSMUSG00000040351.11, intron 5 of 19) 17179 ENSMUSG00000105950.1 ENSMUSG00000105950 ENSMUST00000197051 Gm43679 TEC Interval_97078 chr2 131063099 131064072 + 0 NA promoter-TSS (ENSMUSG00000027318.17) protein_coding-promoter-TSS (ENSMUSG00000027318.17) -9059 ENSMUSG00000027318.17 ENSMUSG00000027318 ENSMUST00000124481 Adam33 protein_coding Interval_51641 chr14 31010403 31012581 + 0 NA TTS (ENSMUSG00000042354.7) protein_coding-TTS (ENSMUSG00000042354.7) 2874 ENSMUSG00000077212.1 ENSMUSG00000077212 ENSMUST00000104024 Snord69 snoRNA Interval_93146 chr2 70593113 70593312 + 0 NA intron (ENSMUSG00000070880.10, intron 11 of 15) protein_coding-intron (ENSMUSG00000070880.10, intron 12 of 16) 25664 ENSMUSG00000086699.3 ENSMUSG00000086699 ENSMUST00000153501 Gm16510 processed_pseudogene Interval_479 chr1 6188228 6189045 + 0 NA Intergenic Intergenic 26657 ENSMUSG00000090031.2 ENSMUSG00000090031 ENSMUST00000097832 4732440D04Rik antisense Interval_45410 chr13 54962085 54962779 + 0 NA intron (ENSMUSG00000025876.15, intron 1 of 14) protein_coding-intron (ENSMUSG00000025876.15, intron 1 of 15) -32176 ENSMUSG00000087335.2 ENSMUSG00000087335 ENSMUST00000144718 4930526F13Rik lincRNA Interval_89450 chr2 20735348 20738463 + 0 NA promoter-TSS (ENSMUSG00000036617.17) protein_coding-promoter-TSS (ENSMUSG00000036617.17) -23671 ENSMUSG00000086418.1 ENSMUSG00000086418 ENSMUST00000137186 Gm13362 antisense Interval_111837 chr4 31710263 31710467 + 0 NA Intergenic Intergenic -275302 ENSMUSG00000028284.13 ENSMUSG00000028284 ENSMUST00000131310 Map3k7 protein_coding Interval_44621 chr13 46768618 46768857 + 0 NA intron (ENSMUSG00000021375.11, intron 10 of 15) protein_coding-intron (ENSMUSG00000021375.11, intron 33 of 37) -1088 ENSMUSG00000064558.1 ENSMUSG00000064558 ENSMUST00000082624 Gm24620 snoRNA Interval_127398 chr5 103721364 103721612 + 0 NA intron (ENSMUSG00000029313.18, intron 2 of 6) protein_coding-intron (ENSMUSG00000029313.18, intron 2 of 6) -33076 ENSMUSG00000029313.18 ENSMUSG00000029313 ENSMUST00000152145 Aff1 protein_coding Interval_150577 chr7 112605700 112606431 + 0 NA Intergenic Intergenic 12160 ENSMUSG00000093002.1 ENSMUSG00000093002 ENSMUST00000175261 Gm24154 snoRNA Interval_167233 chr9 66381951 66382237 + 0 NA intron (ENSMUSG00000038664.16, intron 3 of 77) protein_coding-intron (ENSMUSG00000038664.16, intron 3 of 77) -21352 ENSMUSG00000084437.1 ENSMUSG00000084437 ENSMUST00000122488 Gm23428 snRNA Interval_128173 chr5 111488745 111489600 + 0 NA Intergenic Intergenic 65583 ENSMUSG00000106560.1 ENSMUSG00000106560 ENSMUST00000196957 Gm43119 TEC Interval_56807 chr14 122208909 122209569 + 0 NA intron (ENSMUSG00000025545.10, intron 1 of 7) protein_coding-intron (ENSMUSG00000025545.10, intron 1 of 7) 24415 ENSMUSG00000100585.1 ENSMUSG00000100585 ENSMUST00000187423 1700108J01Rik antisense Interval_144602 chr7 26835251 26835762 + 0 NA promoter-TSS (ENSMUSG00000005547.14) protein_coding-promoter-TSS (ENSMUSG00000005547.14) -5438 ENSMUSG00000005547.14 ENSMUSG00000005547 ENSMUST00000170631 Cyp2a5 protein_coding Interval_70554 chr17 11974727 11975652 + 0 NA intron (ENSMUSG00000023826.16, intron 8 of 10) protein_coding-intron (ENSMUSG00000023826.16, intron 9 of 11) -144140 ENSMUSG00000023827.8 ENSMUSG00000023827 ENSMUST00000167905 Agpat4 protein_coding Interval_89851 chr2 25982424 25984065 + 0 NA promoter-TSS (ENSMUSG00000026933.17) protein_coding-promoter-TSS (ENSMUSG00000026933.17) 38 ENSMUSG00000026933.17 ENSMUSG00000026933 ENSMUST00000127823 Camsap1 protein_coding Interval_91629 chr2 44988669 44989617 + 0 NA exon (ENSMUSG00000026872.18, exon 10 of 10) protein_coding-exon (ENSMUSG00000026872.18, exon 10 of 10) 34034 ENSMUSG00000092679.1 ENSMUSG00000092679 ENSMUST00000174938 Mir5129 miRNA Interval_25757 chr11 51534344 51535150 + 0 NA intron (ENSMUSG00000063564.13, intron 5 of 28) protein_coding-intron (ENSMUSG00000063564.13, intron 5 of 28) -39685 ENSMUSG00000063564.13 ENSMUSG00000063564 ENSMUST00000151098 Col23a1 protein_coding Interval_42781 chr13 19395221 19396203 + 0 NA promoter-TSS (ENSMUSG00000003062.13) protein_coding-promoter-TSS (ENSMUSG00000003062.13) 70 ENSMUSG00000003062.13 ENSMUSG00000003062 ENSMUST00000199924 Stard3nl protein_coding Interval_85061 chr19 21929406 21929793 + 0 NA Intergenic Intergenic -7781 ENSMUSG00000045104.9 ENSMUSG00000045104 ENSMUST00000060477 Ldhb-ps processed_pseudogene Interval_110280 chr3 155708966 155709158 + 0 NA Intergenic Intergenic 46178 ENSMUSG00000103981.1 ENSMUSG00000103981 ENSMUST00000193016 Gm37449 processed_pseudogene Interval_160832 chr8 113364106 113364786 + 0 NA Intergenic Intergenic 155160 ENSMUSG00000077289.1 ENSMUSG00000077289 ENSMUST00000104101 Gm25766 snoRNA Interval_30579 chr11 95223134 95225609 + 0 NA intron (ENSMUSG00000085992.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000085992.1, intron 1 of 1) 1261 ENSMUSG00000085992.1 ENSMUSG00000085992 ENSMUST00000150818 Gm11515 lincRNA Interval_123832 chr5 35814019 35815335 + 0 NA intron (ENSMUSG00000029095.17, intron 1 of 3) protein_coding-intron (ENSMUSG00000029095.17, intron 6 of 19) -43217 ENSMUSG00000029095.17 ENSMUSG00000029095 ENSMUST00000153529 Ablim2 protein_coding Interval_134796 chr6 31614691 31615447 + 0 NA intron (ENSMUSG00000086804.8, intron 2 of 2) lincRNA-intron (ENSMUSG00000086804.8, intron 1 of 2) 40102 ENSMUSG00000086732.1 ENSMUSG00000086732 ENSMUST00000150540 Gm6117 lincRNA Interval_69360 chr16 92457420 92458454 + 0 NA exon (ENSMUSG00000116964.1, exon 2 of 3) antisense-exon (ENSMUSG00000116964.1, exon 2 of 3) 460 ENSMUSG00000116964.1 ENSMUSG00000116964 ENSMUST00000231968 Gm46555 antisense Interval_147983 chr7 76318180 76318594 + 0 NA intron (ENSMUSG00000025754.11, intron 2 of 22) protein_coding-intron (ENSMUSG00000025754.11, intron 2 of 22) -72449 ENSMUSG00000098009.1 ENSMUSG00000098009 ENSMUST00000182353 Gm5597 processed_pseudogene Interval_166776 chr9 62553252 62553772 + 0 NA Intergenic Intergenic 38483 ENSMUSG00000084540.1 ENSMUSG00000084540 ENSMUST00000122591 n-R5s84 rRNA Interval_63522 chr15 101714532 101715284 + 0 NA Intergenic Intergenic -2010 ENSMUSG00000061527.7 ENSMUSG00000061527 ENSMUST00000023709 Krt5 protein_coding Interval_157525 chr8 71203093 71203940 + 0 NA Intergenic Intergenic -20433 ENSMUSG00000110664.1 ENSMUSG00000110664 ENSMUST00000212311 Aprt-ps processed_pseudogene Interval_114295 chr4 71340485 71340869 + 0 NA Intergenic Intergenic 30519 ENSMUSG00000083914.3 ENSMUSG00000083914 ENSMUST00000120838 Rps18-ps1 processed_pseudogene Interval_144579 chr7 26380803 26381150 + 0 NA intron (ENSMUSG00000040614.14, intron 1 of 2) protein_coding-intron (ENSMUSG00000040614.14, intron 2 of 7) 22724 ENSMUSG00000040614.14 ENSMUSG00000040614 ENSMUST00000160277 Nlrp9c protein_coding Interval_17776 chr10 80018842 80020846 + 0 NA intron (ENSMUSG00000035697.14, intron 1 of 21) protein_coding-intron (ENSMUSG00000035697.14, intron 1 of 21) -1899 ENSMUSG00000035697.14 ENSMUSG00000035697 ENSMUST00000150022 Arhgap45 protein_coding Interval_62018 chr15 85913538 85914050 + 0 NA intron (ENSMUSG00000016028.11, intron 23 of 33) protein_coding-intron (ENSMUSG00000016028.11, intron 24 of 34) -11595 ENSMUSG00000016028.11 ENSMUSG00000016028 ENSMUST00000227450 Celsr1 protein_coding Interval_147405 chr7 66505336 66505633 + 0 NA Intergenic Intergenic 60141 ENSMUSG00000109330.1 ENSMUSG00000109330 ENSMUST00000208155 Gm44754 processed_pseudogene Interval_37195 chr12 59461089 59461627 + 0 NA Intergenic Intergenic -105749 ENSMUSG00000111978.1 ENSMUSG00000111978 ENSMUST00000219779 Gm48268 processed_pseudogene Interval_51189 chr14 24586643 24586920 + 0 NA Intergenic Intergenic 30686 ENSMUSG00000048628.5 ENSMUSG00000048628 ENSMUST00000062438 4930542C16Rik lincRNA Interval_114304 chr4 72080133 72081260 + 0 NA Intergenic Intergenic 60617 ENSMUSG00000008305.18 ENSMUSG00000008305 ENSMUST00000134225 Tle1 protein_coding Interval_135457 chr6 39430444 39431725 + 0 NA Intergenic Intergenic -8665 ENSMUSG00000064900.1 ENSMUSG00000064900 ENSMUST00000082966 Gm25402 snoRNA Interval_77194 chr17 87265372 87266316 + 0 NA promoter-TSS (ENSMUSG00000024150.12) protein_coding-promoter-TSS (ENSMUSG00000024150.12) 36 ENSMUSG00000024150.12 ENSMUSG00000024150 ENSMUST00000139258 Mcfd2 protein_coding Interval_121757 chr5 7010030 7010249 + 0 NA intron (ENSMUSG00000092094.5, intron 1 of 3) protein_coding-intron (ENSMUSG00000092094.5, intron 1 of 3) 167717 ENSMUSG00000064851.1 ENSMUSG00000064851 ENSMUST00000082917 Gm24525 snRNA Interval_172299 chrX 12610129 12612121 + 0 NA intron (ENSMUSG00000031007.2, intron 8 of 8) protein_coding-intron (ENSMUSG00000031007.2, intron 8 of 8) 9107 ENSMUSG00000083199.1 ENSMUSG00000083199 ENSMUST00000117810 Gm9432 processed_pseudogene Interval_11929 chr1 187249470 187250073 + 0 NA intron (ENSMUSG00000039210.16, intron 6 of 6) protein_coding-intron (ENSMUSG00000039210.16, intron 5 of 9) 13314 ENSMUSG00000104394.2 ENSMUSG00000104394 ENSMUST00000193542 Gm37254 TEC Interval_57774 chr15 19463621 19465091 + 0 NA Intergenic Intergenic -8004 ENSMUSG00000115516.1 ENSMUSG00000115516 ENSMUST00000226898 Gm8341 processed_pseudogene Interval_31667 chr11 102138323 102138639 + 0 NA Intergenic Intergenic 7765 ENSMUSG00000087339.1 ENSMUSG00000087339 ENSMUST00000123060 Gm11586 antisense Interval_84431 chr19 10859188 10860648 + 0 NA TTS (ENSMUSG00000024737.2) protein_coding-TTS (ENSMUSG00000024737.2) 7220 ENSMUSG00000024736.15 ENSMUSG00000024736 ENSMUST00000238070 Tmem132a protein_coding Interval_125849 chr5 74998573 74999482 + 0 NA exon (ENSMUSG00000029229.8, exon 6 of 6) protein_coding-exon (ENSMUSG00000029229.8, exon 6 of 6) -9961 ENSMUSG00000107306.1 ENSMUSG00000107306 ENSMUST00000201367 Gm42577 TEC Interval_67893 chr16 58750813 58751689 + 0 NA TTS (ENSMUSG00000077595.1) snoRNA-TTS (ENSMUSG00000077595.1) 345 ENSMUSG00000077595.1 ENSMUSG00000077595 ENSMUST00000104407 Gm26019 snoRNA Interval_172930 chrX 56454677 56456498 + 0 NA intron (ENSMUSG00000035967.15, intron 2 of 17) protein_coding-intron (ENSMUSG00000035967.15, intron 2 of 16) 702 ENSMUSG00000035967.15 ENSMUSG00000035967 ENSMUST00000142624 Ints6l protein_coding Interval_65281 chr16 21209630 21209836 + 0 NA promoter-TSS (ENSMUSG00000005958.15) protein_coding-promoter-TSS (ENSMUSG00000005958.15) -791 ENSMUSG00000005958.15 ENSMUSG00000005958 ENSMUST00000160053 Ephb3 protein_coding Interval_77785 chr18 3480968 3481817 + 0 NA Intergenic Intergenic -2826 ENSMUSG00000117469.1 ENSMUSG00000117469 ENSMUST00000234804 Gm50089 processed_pseudogene Interval_105907 chr3 90008901 90009264 + 0 NA intron (ENSMUSG00000042520.16, intron 24 of 25) protein_coding-intron (ENSMUSG00000042520.16, intron 24 of 28) 1648 ENSMUSG00000077569.1 ENSMUSG00000077569 ENSMUST00000104381 Gm24608 snoRNA Interval_68803 chr16 87060597 87060950 + 0 NA Intergenic Intergenic -11513 ENSMUSG00000116555.1 ENSMUSG00000116555 ENSMUST00000231899 Gm38477 lincRNA Interval_62020 chr15 85926130 85927080 + 0 NA intron (ENSMUSG00000016028.11, intron 16 of 33) protein_coding-intron (ENSMUSG00000016028.11, intron 17 of 34) -24406 ENSMUSG00000016028.11 ENSMUSG00000016028 ENSMUST00000227450 Celsr1 protein_coding Interval_94244 chr2 86272760 86272970 + 0 NA TTS (ENSMUSG00000075193.2) protein_coding-TTS (ENSMUSG00000075193.2) -4040 ENSMUSG00000083969.1 ENSMUSG00000083969 ENSMUST00000119802 Olfr1050-ps1 unprocessed_pseudogene Interval_88754 chr2 10311187 10312358 + 0 NA Intergenic Intergenic -60676 ENSMUSG00000061186.15 ENSMUSG00000061186 ENSMUST00000041105 Sfmbt2 protein_coding Interval_101775 chr3 9515449 9516248 + 0 NA intron (ENSMUSG00000040209.12, intron 1 of 9) protein_coding-intron (ENSMUSG00000040209.12, intron 2 of 8) 19680 ENSMUSG00000103485.1 ENSMUSG00000103485 ENSMUST00000192900 Gm38001 TEC Interval_127024 chr5 99656172 99656459 + 0 NA TTS (ENSMUSG00000087791.1) snoRNA-TTS (ENSMUSG00000087791.1) 614 ENSMUSG00000087791.1 ENSMUSG00000087791 ENSMUST00000157166 Gm25969 snoRNA Interval_83255 chr18 83034855 83035084 + 0 NA intron (ENSMUSG00000118094.1, intron 2 of 6) processed_transcript-intron (ENSMUSG00000118094.1, intron 2 of 6) -13814 ENSMUSG00000117976.1 ENSMUSG00000117976 ENSMUST00000238101 Gm50437 lincRNA Interval_168088 chr9 76167331 76167592 + 0 NA intron (ENSMUSG00000059383.14, intron 6 of 7) protein_coding-intron (ENSMUSG00000059383.14, intron 7 of 8) 46196 ENSMUSG00000059383.14 ENSMUSG00000059383 ENSMUST00000074880 Gfral protein_coding Interval_166752 chr9 62432363 62433128 + 0 NA intron (ENSMUSG00000041729.15, intron 3 of 3) protein_coding-intron (ENSMUSG00000041729.15, intron 3 of 11) 16403 ENSMUSG00000041729.15 ENSMUSG00000041729 ENSMUST00000123379 Coro2b protein_coding Interval_68206 chr16 68194473 68194846 + 0 NA Intergenic Intergenic -29804 ENSMUSG00000116638.1 ENSMUSG00000116638 ENSMUST00000232077 Gm49650 processed_pseudogene Interval_165339 chr9 46400883 46401109 + 0 NA Intergenic Intergenic 3634 ENSMUSG00000110802.1 ENSMUSG00000110802 ENSMUST00000213920 Gm47141 lincRNA Interval_140167 chr6 114954213 114954967 + 0 NA intron (ENSMUSG00000030315.15, intron 2 of 5) protein_coding-intron (ENSMUSG00000030315.15, intron 2 of 4) -32774 ENSMUSG00000030315.15 ENSMUSG00000030315 ENSMUST00000204693 Vgll4 protein_coding Interval_146979 chr7 56899829 56900111 + 0 NA intron (ENSMUSG00000055026.13, intron 5 of 9) protein_coding-intron (ENSMUSG00000055026.13, intron 5 of 9) 20959 ENSMUSG00000108556.1 ENSMUSG00000108556 ENSMUST00000206902 Gm17987 processed_pseudogene Interval_12627 chr10 3995429 3997201 + 0 NA intron (ENSMUSG00000040675.17, intron 7 of 27) protein_coding-intron (ENSMUSG00000040675.17, intron 7 of 27) 3944 ENSMUSG00000082247.1 ENSMUSG00000082247 ENSMUST00000119524 Gm16074 processed_pseudogene Interval_93717 chr2 76095249 76095508 + 0 NA intron (ENSMUSG00000075270.11, intron 7 of 14) protein_coding-intron (ENSMUSG00000075270.11, intron 10 of 19) -113411 ENSMUSG00000075271.4 ENSMUSG00000075271 ENSMUST00000099994 Ttc30a1 protein_coding Interval_51053 chr14 21824000 21824272 + 0 NA Intergenic Intergenic -1102 ENSMUSG00000021771.14 ENSMUSG00000021771 ENSMUST00000142084 Vdac2 protein_coding Interval_138667 chr6 90999347 90999688 + 0 NA Intergenic Intergenic 93698 ENSMUSG00000099662.1 ENSMUSG00000099662 ENSMUST00000117103 Ppp1r2-ps2 processed_pseudogene Interval_72102 chr17 28048036 28048908 + 0 NA intron (ENSMUSG00000024219.16, intron 2 of 5) protein_coding-intron (ENSMUSG00000024219.16, intron 14 of 24) 7697 ENSMUSG00000024219.16 ENSMUSG00000024219 ENSMUST00000232769 Anks1 protein_coding Interval_38832 chr12 83087612 83088190 + 0 NA intron (ENSMUSG00000021219.16, intron 11 of 14) protein_coding-intron (ENSMUSG00000021219.16, intron 11 of 14) 10973 ENSMUSG00000102029.1 ENSMUSG00000102029 ENSMUST00000187556 Gm29530 antisense Interval_869 chr1 12813774 12815345 + 0 NA intron (ENSMUSG00000016918.15, intron 7 of 11) protein_coding-intron (ENSMUSG00000016918.15, intron 7 of 21) 95095 ENSMUSG00000016918.15 ENSMUSG00000016918 ENSMUST00000185780 Sulf1 protein_coding Interval_65767 chr16 28444788 28447314 + 0 NA promoter-TSS (ENSMUSG00000022523.10) protein_coding-promoter-TSS (ENSMUSG00000022523.10) 153992 ENSMUSG00000076064.1 ENSMUSG00000076064 ENSMUST00000102110 Mir690 miRNA Interval_33120 chr11 114576663 114578809 + 0 NA Intergenic Intergenic -86872 ENSMUSG00000083769.1 ENSMUSG00000083769 ENSMUST00000120766 Gm11689 processed_pseudogene Interval_148053 chr7 78894807 78896855 + 0 NA promoter-TSS (ENSMUSG00000030609.18) protein_coding-promoter-TSS (ENSMUSG00000030609.18) -6530 ENSMUSG00000030609.18 ENSMUSG00000030609 ENSMUST00000205861 Aen protein_coding Interval_24358 chr11 32650293 32651370 + 0 NA intron (ENSMUSG00000020271.17, intron 1 of 12) protein_coding-intron (ENSMUSG00000020271.17, intron 1 of 13) 7927 ENSMUSG00000020271.17 ENSMUSG00000020271 ENSMUST00000143290 Fbxw11 protein_coding Interval_119869 chr4 140601291 140602543 + 0 NA intron (ENSMUSG00000040964.16, intron 3 of 4) protein_coding-intron (ENSMUSG00000040964.16, intron 4 of 27) 15148 ENSMUSG00000040964.16 ENSMUSG00000040964 ENSMUST00000154979 Arhgef10l protein_coding Interval_20896 chr10 121830366 121831196 + 0 NA exon (ENSMUSG00000112596.1, exon 1 of 1) TEC-exon (ENSMUSG00000112596.1, exon 1 of 1) 1277 ENSMUSG00000112596.1 ENSMUSG00000112596 ENSMUST00000218664 Gm48804 TEC Interval_9665 chr1 160863115 160863718 + 0 NA Intergenic Intergenic 12906 ENSMUSG00000077648.1 ENSMUSG00000077648 ENSMUST00000104460 Gm24988 snoRNA Interval_173377 chrX 85716471 85717317 + 0 NA exon (ENSMUSG00000081933.1, exon 1 of 1) processed_pseudogene-exon (ENSMUSG00000081933.1, exon 1 of 1) 456 ENSMUSG00000081933.1 ENSMUSG00000081933 ENSMUST00000121559 Gm14767 processed_pseudogene Interval_53643 chr14 60525108 60525752 + 0 NA intron (ENSMUSG00000101797.1, intron 2 of 2) lincRNA-intron (ENSMUSG00000101797.1, intron 2 of 2) 40222 ENSMUSG00000101797.1 ENSMUSG00000101797 ENSMUST00000190392 Gm29266 lincRNA Interval_6612 chr1 118293451 118294633 + 0 NA TTS (ENSMUSG00000026374.14) protein_coding-TTS (ENSMUSG00000026374.14) 17420 ENSMUSG00000026374.14 ENSMUSG00000026374 ENSMUST00000186163 Tsn protein_coding Interval_93719 chr2 76109841 76110071 + 0 NA intron (ENSMUSG00000075270.11, intron 7 of 14) protein_coding-intron (ENSMUSG00000075270.11, intron 10 of 19) 105438 ENSMUSG00000075270.11 ENSMUSG00000075270 ENSMUST00000144892 Pde11a protein_coding Interval_93502 chr2 73583993 73586270 + 0 NA exon (ENSMUSG00000086382.1, exon 1 of 2) antisense-exon (ENSMUSG00000086382.1, exon 1 of 2) 271 ENSMUSG00000086382.1 ENSMUSG00000086382 ENSMUST00000147235 Chrna1os antisense Interval_76379 chr17 79745644 79747208 + 0 NA Intergenic Intergenic 12552 ENSMUSG00000117426.1 ENSMUSG00000117426 ENSMUST00000234743 Gm33055 lincRNA Interval_109273 chr3 138544182 138544605 + 0 NA intron (ENSMUSG00000028156.12, intron 2 of 7) protein_coding-intron (ENSMUSG00000028156.12, intron 2 of 7) 17108 ENSMUSG00000028156.12 ENSMUSG00000028156 ENSMUST00000198252 Eif4e protein_coding Interval_33445 chr11 116575721 116576402 + 0 NA intron (ENSMUSG00000020802.8, intron 1 of 17) protein_coding-intron (ENSMUSG00000020802.8, intron 1 of 17) -17626 ENSMUSG00000020804.12 ENSMUSG00000020804 ENSMUST00000132601 Aanat protein_coding Interval_128258 chr5 112098563 112099836 + 0 NA Intergenic Intergenic -57038 ENSMUSG00000104538.1 ENSMUSG00000104538 ENSMUST00000197688 1700016B01Rik lincRNA Interval_51517 chr14 29433082 29434116 + 0 NA intron (ENSMUSG00000021991.9, intron 4 of 37) protein_coding-intron (ENSMUSG00000021991.9, intron 4 of 37) -99864 ENSMUSG00000021991.9 ENSMUSG00000021991 ENSMUST00000224128 Cacna2d3 protein_coding Interval_134171 chr6 22347009 22347898 + 0 NA intron (ENSMUSG00000029672.16, intron 1 of 9) protein_coding-intron (ENSMUSG00000029672.16, intron 1 of 8) -3540 ENSMUSG00000029672.16 ENSMUSG00000029672 ENSMUST00000168965 Fam3c protein_coding Interval_85541 chr19 28261784 28261997 + 0 NA TTS (ENSMUSG00000052942.13) protein_coding-TTS (ENSMUSG00000052942.13) 38535 ENSMUSG00000052942.13 ENSMUSG00000052942 ENSMUST00000161328 Glis3 protein_coding Interval_30403 chr11 94158633 94161242 + 0 NA Intergenic Intergenic 26435 ENSMUSG00000086003.7 ENSMUSG00000086003 ENSMUST00000125406 B230206L02Rik processed_transcript Interval_10292 chr1 168149221 168149800 + 0 NA intron (ENSMUSG00000052534.15, intron 7 of 7) protein_coding-intron (ENSMUSG00000052534.15, intron 7 of 7) 145371 ENSMUSG00000093538.2 ENSMUSG00000093538 ENSMUST00000177351 Gm20711 antisense Interval_50615 chr14 16598064 16598459 + 0 NA intron (ENSMUSG00000017491.9, intron 1 of 1) protein_coding-intron (ENSMUSG00000017491.9, intron 2 of 3) -22434 ENSMUSG00000017491.9 ENSMUSG00000017491 ENSMUST00000225245 Rarb protein_coding Interval_29708 chr11 86263890 86265384 + 0 NA intron (ENSMUSG00000085208.3, intron 2 of 6) antisense-intron (ENSMUSG00000085208.3, intron 2 of 6) -32461 ENSMUSG00000018068.13 ENSMUSG00000018068 ENSMUST00000141756 Ints2 protein_coding Interval_47860 chr13 93918505 93919116 + 0 NA intron (ENSMUSG00000042082.7, intron 6 of 7) protein_coding-intron (ENSMUSG00000042082.7, intron 6 of 7) 4501 ENSMUSG00000093106.1 ENSMUSG00000093106 ENSMUST00000175365 Gm25534 miRNA Interval_73700 chr17 42871792 42872120 + 0 NA intron (ENSMUSG00000061665.7, intron 1 of 17) protein_coding-intron (ENSMUSG00000061665.7, intron 1 of 17) -40926 ENSMUSG00000061665.7 ENSMUSG00000061665 ENSMUST00000233626 Cd2ap protein_coding Interval_164001 chr9 30720648 30720964 + 0 NA Intergenic Intergenic 32076 ENSMUSG00000111249.1 ENSMUSG00000111249 ENSMUST00000215919 Gm47717 processed_pseudogene Interval_100392 chr2 168777159 168777732 + 0 NA Intergenic Intergenic 11302 ENSMUSG00000085322.2 ENSMUSG00000085322 ENSMUST00000145105 Gm14261 antisense Interval_114132 chr4 63968447 63969240 + 0 NA intron (ENSMUSG00000028364.15, intron 20 of 25) protein_coding-intron (ENSMUSG00000028364.15, intron 19 of 24) -72744 ENSMUSG00000084345.3 ENSMUSG00000084345 ENSMUST00000120241 Rpl17-ps4 processed_pseudogene Interval_45490 chr13 55429297 55429821 + 0 NA Intergenic Intergenic -2780 ENSMUSG00000021492.15 ENSMUSG00000021492 ENSMUST00000170921 F12 protein_coding Interval_121460 chr4 155961783 155963071 + 0 NA exon (ENSMUSG00000023571.4, exon 1 of 8) protein_coding-exon (ENSMUSG00000023571.4, exon 1 of 8) -2134 ENSMUSG00000023571.4 ENSMUSG00000023571 ENSMUST00000127222 C1qtnf12 protein_coding Interval_160199 chr8 107088361 107089340 + 0 NA intron (ENSMUSG00000031921.17, intron 3 of 10) protein_coding-intron (ENSMUSG00000031921.17, intron 3 of 10) 7256 ENSMUSG00000098671.1 ENSMUSG00000098671 ENSMUST00000184187 Mir7075 miRNA Interval_112723 chr4 44410903 44411102 + 0 NA Intergenic Intergenic 1593 ENSMUSG00000077587.1 ENSMUSG00000077587 ENSMUST00000104399 Gm24376 snoRNA Interval_161636 chr8 121708989 121709852 + 0 NA intron (ENSMUSG00000092329.1, intron 1 of 15) protein_coding-intron (ENSMUSG00000092329.1, intron 1 of 15) -35332 ENSMUSG00000110673.1 ENSMUSG00000110673 ENSMUST00000211931 Gm45833 lincRNA Interval_4066 chr1 67061382 67061929 + 0 NA Intergenic Intergenic -39437 ENSMUSG00000026000.16 ENSMUSG00000026000 ENSMUST00000189210 Lancl1 protein_coding Interval_150468 chr7 110923563 110923857 + 0 NA promoter-TSS (ENSMUSG00000005611.15) protein_coding-promoter-TSS (ENSMUSG00000005611.15) 18725 ENSMUSG00000087160.1 ENSMUSG00000087160 ENSMUST00000126011 Gm16336 antisense Interval_120710 chr4 150227963 150228934 + 0 NA TTS (ENSMUSG00000082140.1) processed_pseudogene-TTS (ENSMUSG00000082140.1) 413 ENSMUSG00000082140.1 ENSMUSG00000082140 ENSMUST00000117930 Gm13094 processed_pseudogene Interval_112083 chr4 34558266 34559411 + 0 NA intron (ENSMUSG00000028291.7, intron 1 of 1) protein_coding-intron (ENSMUSG00000028291.7, intron 1 of 4) 7887 ENSMUSG00000028291.7 ENSMUSG00000028291 ENSMUST00000132230 Akirin2 protein_coding Interval_53703 chr14 60990156 60990508 + 0 NA intron (ENSMUSG00000060548.13, intron 5 of 5) protein_coding-intron (ENSMUSG00000060548.13, intron 5 of 9) 47559 ENSMUSG00000060548.13 ENSMUSG00000060548 ENSMUST00000225730 Tnfrsf19 protein_coding Interval_79801 chr18 35182452 35182855 + 0 NA exon (ENSMUSG00000037815.7, exon 7 of 7) protein_coding-exon (ENSMUSG00000037815.7, exon 7 of 7) 32371 ENSMUSG00000071862.3 ENSMUSG00000071862 ENSMUST00000236680 Lrrtm2 protein_coding Interval_19336 chr10 97037836 97038792 + 0 NA intron (ENSMUSG00000111924.1, intron 1 of 4) lincRNA-intron (ENSMUSG00000111924.1, intron 1 of 4) 2546 ENSMUSG00000111924.1 ENSMUSG00000111924 ENSMUST00000219048 4930556N09Rik lincRNA Interval_174463 chrX 152779931 152780381 + 0 NA Intergenic Intergenic -1765 ENSMUSG00000025333.10 ENSMUSG00000025333 ENSMUST00000139310 Gpr143 protein_coding Interval_166024 chr9 55542083 55542876 + 0 NA TTS (ENSMUSG00000032318.12) protein_coding-TTS (ENSMUSG00000032318.12) -1932 ENSMUSG00000090270.1 ENSMUSG00000090270 ENSMUST00000166637 Gm17226 antisense Interval_116554 chr4 115557473 115559312 + 0 NA Intergenic Intergenic -5257 ENSMUSG00000028712.12 ENSMUSG00000028712 ENSMUST00000030480 Cyp4a31 protein_coding Interval_123570 chr5 33534195 33537206 + 0 NA Intergenic Intergenic 93362 ENSMUSG00000037339.17 ENSMUSG00000037339 ENSMUST00000140043 Fam53a protein_coding Interval_128936 chr5 116180570 116181435 + 0 NA intron (ENSMUSG00000043913.14, intron 3 of 5) protein_coding-intron (ENSMUSG00000043913.14, intron 3 of 13) 57388 ENSMUSG00000086655.1 ENSMUSG00000086655 ENSMUST00000127792 C330018A13Rik antisense Interval_88752 chr2 10292414 10292613 + 0 NA Intergenic Intergenic -79935 ENSMUSG00000061186.15 ENSMUSG00000061186 ENSMUST00000041105 Sfmbt2 protein_coding Interval_95193 chr2 104680747 104682284 + 0 NA exon (ENSMUSG00000027175.10, exon 10 of 10) protein_coding-exon (ENSMUSG00000027175.10, exon 10 of 10) 24952 ENSMUSG00000027175.10 ENSMUSG00000027175 ENSMUST00000132600 Tcp11l1 protein_coding Interval_157097 chr8 65125798 65126546 + 0 NA intron (ENSMUSG00000074300.4, intron 1 of 2) protein_coding-intron (ENSMUSG00000074300.4, intron 1 of 2) 3391 ENSMUSG00000074300.4 ENSMUSG00000074300 ENSMUST00000098713 Smim31 protein_coding Interval_120908 chr4 151483161 151484157 + 0 NA intron (ENSMUSG00000014592.21, intron 5 of 7) protein_coding-intron (ENSMUSG00000014592.21, intron 4 of 23) 107189 ENSMUSG00000085593.1 ENSMUSG00000085593 ENSMUST00000129097 4930589P08Rik antisense Interval_86880 chr19 44587320 44588456 + 0 NA Intergenic Intergenic 25038 ENSMUSG00000036450.4 ENSMUSG00000036450 ENSMUST00000040455 Hif1an protein_coding Interval_165361 chr9 46605628 46605919 + 0 NA Intergenic Intergenic -1482 ENSMUSG00000111649.1 ENSMUSG00000111649 ENSMUST00000217349 Gm48945 lincRNA Interval_159890 chr8 104737221 104737511 + 0 NA exon (ENSMUSG00000055730.16, exon 5 of 12) protein_coding-exon (ENSMUSG00000055730.16, exon 5 of 12) 3348 ENSMUSG00000055730.16 ENSMUSG00000055730 ENSMUST00000159303 Ces2a protein_coding Interval_95642 chr2 113333462 113334625 + 0 NA intron (ENSMUSG00000044042.19, intron 1 of 3) protein_coding-intron (ENSMUSG00000044042.19, intron 1 of 18) 45770 ENSMUSG00000093660.1 ENSMUSG00000093660 ENSMUST00000176208 Gm26505 snRNA Interval_75508 chr17 67628692 67629922 + 0 NA promoter-TSS (ENSMUSG00000117029.1) lincRNA-promoter-TSS (ENSMUSG00000117029.1) 25 ENSMUSG00000117029.1 ENSMUSG00000117029 ENSMUST00000233130 Gm36201 lincRNA Interval_137408 chr6 71962116 71962664 + 0 NA exon (ENSMUSG00000097133.1, exon 2 of 3) antisense-exon (ENSMUSG00000097133.1, exon 2 of 3) 1385 ENSMUSG00000097133.1 ENSMUSG00000097133 ENSMUST00000181028 Gm26628 antisense Interval_75097 chr17 63345330 63345619 + 0 NA intron (ENSMUSG00000023965.13, intron 3 of 5) protein_coding-intron (ENSMUSG00000023965.13, intron 6 of 8) 1936 ENSMUSG00000091426.1 ENSMUSG00000091426 ENSMUST00000165006 Gm17228 processed_pseudogene Interval_129067 chr5 117188232 117188657 + 0 NA TTS (ENSMUSG00000061288.13) protein_coding-TTS (ENSMUSG00000061288.13) -8111 ENSMUSG00000084587.1 ENSMUSG00000084587 ENSMUST00000122638 n-R5s174 rRNA Interval_33147 chr11 114745026 114745567 + 0 NA TTS (ENSMUSG00000034706.16) protein_coding-TTS (ENSMUSG00000034706.16) 17888 ENSMUSG00000034706.16 ENSMUSG00000034706 ENSMUST00000130692 Dnaic2 protein_coding Interval_17226 chr10 75118286 75119911 + 0 NA intron (ENSMUSG00000009681.10, intron 1 of 22) protein_coding-intron (ENSMUSG00000009681.10, intron 1 of 22) -57278 ENSMUSG00000009681.10 ENSMUSG00000009681 ENSMUST00000219807 Bcr protein_coding Interval_8474 chr1 139791194 139792051 + 0 NA Intergenic Intergenic 4639 ENSMUSG00000095393.1 ENSMUSG00000095393 ENSMUST00000122621 Gm25619 snRNA Interval_30338 chr11 93698293 93698587 + 0 NA Intergenic Intergenic 3358 ENSMUSG00000080872.1 ENSMUSG00000080872 ENSMUST00000122414 Gm11506 processed_pseudogene Interval_136047 chr6 50312322 50312985 + 0 NA exon (ENSMUSG00000029822.15, exon 16 of 22) protein_coding-exon (ENSMUSG00000029822.15, exon 16 of 22) 39304 ENSMUSG00000029822.15 ENSMUSG00000029822 ENSMUST00000154333 Osbpl3 protein_coding Interval_41196 chr12 111727998 111728893 + 0 NA intron (ENSMUSG00000037787.14, intron 3 of 5) protein_coding-intron (ENSMUSG00000037787.14, intron 3 of 4) 2053 ENSMUSG00000090193.1 ENSMUSG00000090193 ENSMUST00000159897 Gm15995 processed_transcript Interval_78185 chr18 9957603 9958804 + 0 NA promoter-TSS (ENSMUSG00000024287.8) protein_coding-promoter-TSS (ENSMUSG00000024287.8) -28086 ENSMUSG00000024287.8 ENSMUSG00000024287 ENSMUST00000234111 Thoc1 protein_coding Interval_126837 chr5 93729192 93729906 + 0 NA Intergenic Intergenic -8547 ENSMUSG00000107159.1 ENSMUSG00000107159 ENSMUST00000202043 Gm7919 unprocessed_pseudogene Interval_50733 chr14 18695820 18697465 + 0 NA intron (ENSMUSG00000058317.12, intron 4 of 4) protein_coding-intron (ENSMUSG00000058317.12, intron 2 of 4) -117527 ENSMUSG00000077689.1 ENSMUSG00000077689 ENSMUST00000104501 Gm22499 snoRNA Interval_160449 chr8 109574276 109574506 + 0 NA TTS (ENSMUSG00000031723.8) protein_coding-TTS (ENSMUSG00000031723.8) 4619 ENSMUSG00000031722.10 ENSMUSG00000031722 ENSMUST00000212018 Hp protein_coding Interval_109632 chr3 145583185 145583990 + 0 NA TTS (ENSMUSG00000074182.8) protein_coding-TTS (ENSMUSG00000074182.8) 7340 ENSMUSG00000074182.8 ENSMUSG00000074182 ENSMUST00000197474 Znhit6 protein_coding Interval_166912 chr9 63896274 63896600 + 0 NA Intergenic Intergenic -1828 ENSMUSG00000110768.1 ENSMUSG00000110768 ENSMUST00000215935 Gm18541 processed_pseudogene Interval_160085 chr8 106280763 106281348 + 0 NA promoter-TSS (ENSMUSG00000031906.9) protein_coding-promoter-TSS (ENSMUSG00000031906.9) -77 ENSMUSG00000031906.9 ENSMUSG00000031906 ENSMUST00000212896 Smpd3 protein_coding Interval_171507 chr9 118925005 118927185 + 0 NA promoter-TSS (ENSMUSG00000047409.13) protein_coding-promoter-TSS (ENSMUSG00000047409.13) 360 ENSMUSG00000086119.2 ENSMUSG00000086119 ENSMUST00000190235 Gm2415 antisense Interval_10000 chr1 164822066 164822528 + 0 NA intron (ENSMUSG00000026574.5, intron 3 of 3) protein_coding-intron (ENSMUSG00000026574.5, intron 3 of 3) -6998 ENSMUSG00000103659.1 ENSMUSG00000103659 ENSMUST00000193955 Gm32569 antisense Interval_157462 chr8 70517420 70518426 + 0 NA TTS (ENSMUSG00000055553.16) protein_coding-TTS (ENSMUSG00000055553.16) 5257 ENSMUSG00000055553.16 ENSMUSG00000055553 ENSMUST00000138586 Kxd1 protein_coding Interval_116444 chr4 112215274 112215557 + 0 NA Intergenic Intergenic -16830 ENSMUSG00000070868.11 ENSMUSG00000070868 ENSMUST00000170945 Skint3 protein_coding Interval_98971 chr2 156411392 156411638 + 0 NA promoter-TSS (ENSMUSG00000076230.1) miRNA-promoter-TSS (ENSMUSG00000076230.1) -341 ENSMUSG00000061272.8 ENSMUSG00000061272 ENSMUST00000117690 Gm14173 processed_pseudogene Interval_71816 chr17 26277824 26278853 + 0 NA TTS (ENSMUSG00000024188.16) protein_coding-TTS (ENSMUSG00000024188.16) -3594 ENSMUSG00000117596.1 ENSMUSG00000117596 ENSMUST00000234156 Gm50013 antisense Interval_141437 chr6 128285789 128286296 + 0 NA intron (ENSMUSG00000030353.15, intron 1 of 1) protein_coding-intron (ENSMUSG00000030353.15, intron 1 of 11) -8060 ENSMUSG00000095262.2 ENSMUSG00000095262 ENSMUST00000179119 Gm21893 processed_pseudogene Interval_144818 chr7 28428871 28429204 + 0 NA intron (ENSMUSG00000109336.1, intron 1 of 12) protein_coding-intron (ENSMUSG00000109336.1, intron 1 of 12) -14070 ENSMUSG00000060791.15 ENSMUSG00000060791 ENSMUST00000138741 Gmfg protein_coding Interval_35621 chr12 25890902 25891494 + 0 NA Intergenic Intergenic 20045 ENSMUSG00000113827.1 ENSMUSG00000113827 ENSMUST00000221959 Gm47733 lincRNA Interval_144819 chr7 28435820 28437453 + 0 NA promoter-TSS (ENSMUSG00000060791.15) protein_coding-promoter-TSS (ENSMUSG00000060791.15) -6471 ENSMUSG00000060791.15 ENSMUSG00000060791 ENSMUST00000138741 Gmfg protein_coding Interval_37217 chr12 60613613 60613819 + 0 NA Intergenic Intergenic -65478 ENSMUSG00000113678.1 ENSMUSG00000113678 ENSMUST00000222270 Gm6068 processed_pseudogene Interval_131763 chr5 139727230 139728485 + 0 NA intron (ENSMUSG00000036718.17, intron 1 of 16) protein_coding-intron (ENSMUSG00000036718.17, intron 1 of 16) 4977 ENSMUSG00000036718.17 ENSMUSG00000036718 ENSMUST00000165645 Micall2 protein_coding Interval_88304 chr2 3512133 3513478 + 0 NA promoter-TSS (ENSMUSG00000109865.1) protein_coding-promoter-TSS (ENSMUSG00000109865.1) -15 ENSMUSG00000051396.15 ENSMUSG00000051396 ENSMUST00000140494 Gm45902 protein_coding Interval_147266 chr7 65285788 65286255 + 0 NA Intergenic Intergenic -72652 ENSMUSG00000108587.1 ENSMUSG00000108587 ENSMUST00000205499 1810049I09Rik lincRNA Interval_127328 chr5 102977214 102977996 + 0 NA intron (ENSMUSG00000046709.18, intron 6 of 11) protein_coding-intron (ENSMUSG00000046709.18, intron 6 of 11) 8708 ENSMUSG00000105947.1 ENSMUSG00000105947 ENSMUST00000199275 Gm43789 TEC Interval_135381 chr6 38736165 38736662 + 0 NA TTS (ENSMUSG00000061436.15) protein_coding-TTS (ENSMUSG00000061436.15) 72534 ENSMUSG00000079598.4 ENSMUSG00000079598 ENSMUST00000238216 Clec2l protein_coding Interval_68579 chr16 79151966 79152154 + 0 NA Intergenic Intergenic -60963 ENSMUSG00000022857.13 ENSMUSG00000022857 ENSMUST00000060402 Tmprss15 protein_coding Interval_126123 chr5 77695189 77695835 + 0 NA Intergenic Intergenic 8136 ENSMUSG00000106996.1 ENSMUSG00000106996 ENSMUST00000201516 Gm31049 unprocessed_pseudogene Interval_141132 chr6 125175333 125176156 + 0 NA TTS (ENSMUSG00000038252.13) protein_coding-TTS (ENSMUSG00000038252.13) 994 ENSMUSG00000038252.13 ENSMUSG00000038252 ENSMUST00000189959 Ncapd2 protein_coding Interval_171372 chr9 117123079 117123324 + 0 NA intron (ENSMUSG00000039607.17, intron 1 of 13) protein_coding-intron (ENSMUSG00000039607.17, intron 1 of 12) 57674 ENSMUSG00000092516.1 ENSMUSG00000092516 ENSMUST00000174520 Gm20397 processed_pseudogene Interval_15549 chr10 51284912 51285171 + 0 NA Intergenic Intergenic 46212 ENSMUSG00000111880.1 ENSMUSG00000111880 ENSMUST00000218609 Gm5040 processed_pseudogene Interval_139657 chr6 106118746 106118946 + 0 NA promoter-TSS (ENSMUSG00000064293.14) protein_coding-promoter-TSS (ENSMUSG00000064293.14) -441265 ENSMUSG00000085067.2 ENSMUSG00000085067 ENSMUST00000142962 Gm15631 lincRNA Interval_16399 chr10 62731578 62731783 + 0 NA Intergenic Intergenic -5879 ENSMUSG00000036923.12 ENSMUSG00000036923 ENSMUST00000126979 Stox1 protein_coding Interval_53898 chr14 63199589 63199837 + 0 NA exon (ENSMUSG00000021944.15, exon 7 of 7) protein_coding-exon (ENSMUSG00000021944.15, exon 7 of 7) -6188 ENSMUSG00000035121.6 ENSMUSG00000035121 ENSMUST00000223723 Neil2 protein_coding Interval_85583 chr19 28818273 28819053 + 0 NA Intergenic Intergenic -5461 ENSMUSG00000098069.1 ENSMUSG00000098069 ENSMUST00000182854 Gm26942 processed_pseudogene Interval_72898 chr17 33027354 33028188 + 0 NA intron (ENSMUSG00000067430.7, intron 1 of 3) protein_coding-intron (ENSMUSG00000067430.7, intron 1 of 3) 5397 ENSMUSG00000067430.7 ENSMUSG00000067430 ENSMUST00000124465 Zfp763 protein_coding Interval_82271 chr18 69842109 69842899 + 0 NA Intergenic Intergenic -64459 ENSMUSG00000064706.1 ENSMUSG00000064706 ENSMUST00000082772 Gm22508 misc_RNA Interval_103312 chr3 38468935 38469284 + 0 NA intron (ENSMUSG00000044864.16, intron 1 of 3) protein_coding-intron (ENSMUSG00000044864.16, intron 2 of 3) 13982 ENSMUSG00000044864.16 ENSMUSG00000044864 ENSMUST00000127837 Ankrd50 protein_coding Interval_36126 chr12 36145155 36147533 + 0 NA exon (ENSMUSG00000113349.1, exon 1 of 1) TEC-exon (ENSMUSG00000113349.1, exon 1 of 1) 1578 ENSMUSG00000113349.1 ENSMUSG00000113349 ENSMUST00000222844 Gm48369 TEC Interval_97591 chr2 140195095 140195814 + 0 NA intron (ENSMUSG00000027384.6, intron 8 of 10) protein_coding-intron (ENSMUSG00000027384.6, intron 8 of 10) 24424 ENSMUSG00000027384.6 ENSMUSG00000027384 ENSMUST00000125913 Ndufaf5 protein_coding Interval_94401 chr2 90761238 90761584 + 0 NA intron (ENSMUSG00000008200.15, intron 8 of 16) protein_coding-intron (ENSMUSG00000008200.15, intron 8 of 16) -13448 ENSMUSG00000080873.3 ENSMUSG00000080873 ENSMUST00000117928 Rpl30-ps3 processed_pseudogene Interval_153906 chr8 10952541 10952764 + 0 NA Intergenic Intergenic -4762 ENSMUSG00000109084.1 ENSMUSG00000109084 ENSMUST00000208843 Gm44955 lincRNA Interval_115790 chr4 104366912 104369205 + 0 NA intron (ENSMUSG00000028519.16, intron 1 of 14) protein_coding-intron (ENSMUSG00000028519.16, intron 3 of 9) -237238 ENSMUSG00000028519.16 ENSMUSG00000028519 ENSMUST00000149672 Dab1 protein_coding Interval_9656 chr1 160780499 160780900 + 0 NA intron (ENSMUSG00000026721.16, intron 1 of 3) protein_coding-intron (ENSMUSG00000026721.16, intron 1 of 20) -17983 ENSMUSG00000102852.1 ENSMUSG00000102852 ENSMUST00000195784 Gm37083 lincRNA Interval_78857 chr18 21001017 21002747 + 0 NA promoter-TSS (ENSMUSG00000024317.15) protein_coding-promoter-TSS (ENSMUSG00000024317.15) -213 ENSMUSG00000024317.15 ENSMUSG00000024317 ENSMUST00000234169 Rnf138 protein_coding Interval_63387 chr15 100757485 100757963 + 0 NA Intergenic Intergenic -24987 ENSMUSG00000116504.1 ENSMUSG00000116504 ENSMUST00000230334 I730030J21Rik processed_transcript Interval_167007 chr9 64461707 64462597 + 0 NA intron (ENSMUSG00000036466.17, intron 1 of 24) protein_coding-intron (ENSMUSG00000036466.17, intron 1 of 24) 76526 ENSMUSG00000036466.17 ENSMUSG00000036466 ENSMUST00000153934 Megf11 protein_coding Interval_39981 chr12 100221493 100222358 + 0 NA Intergenic Intergenic 18327 ENSMUSG00000113362.1 ENSMUSG00000113362 ENSMUST00000220782 Gm40557 lincRNA Interval_51164 chr14 24275346 24276096 + 0 NA Intergenic Intergenic 6810 ENSMUSG00000118622.1 ENSMUSG00000118622 ENSMUST00000239247 AC163638.3 unprocessed_pseudogene Interval_115534 chr4 100355636 100355905 + 0 NA intron (ENSMUSG00000035305.5, intron 4 of 8) protein_coding-intron (ENSMUSG00000035305.5, intron 4 of 8) 6289 ENSMUSG00000080967.1 ENSMUSG00000080967 ENSMUST00000121588 Gm12706 processed_pseudogene Interval_37524 chr12 69565664 69566227 + 0 NA Intergenic Intergenic -4608 ENSMUSG00000095776.1 ENSMUSG00000095776 ENSMUST00000177928 Gm23018 miRNA Interval_144951 chr7 29070757 29073112 + 0 NA exon (ENSMUSG00000030592.18, exon 48 of 106) protein_coding-exon (ENSMUSG00000030592.18, exon 48 of 106) 297 ENSMUSG00000097079.2 ENSMUSG00000097079 ENSMUST00000209109 Gm26604 antisense Interval_146177 chr7 44532982 44536211 + 0 NA promoter-TSS (ENSMUSG00000038644.14) protein_coding-promoter-TSS (ENSMUSG00000038644.14) -678 ENSMUSG00000038644.14 ENSMUSG00000038644 ENSMUST00000145956 Pold1 protein_coding Interval_90502 chr2 30834327 30835520 + 0 NA promoter-TSS (ENSMUSG00000039476.13) protein_coding-promoter-TSS (ENSMUSG00000039476.13) -6669 ENSMUSG00000039483.10 ENSMUSG00000039483 ENSMUST00000147414 Asb6 protein_coding Interval_99760 chr2 164755791 164756032 + 0 NA intron (ENSMUSG00000086453.7, intron 5 of 5) protein_coding-intron (ENSMUSG00000017299.13, intron 4 of 12) 1772 ENSMUSG00000017299.13 ENSMUSG00000017299 ENSMUST00000135458 Dnttip1 protein_coding Interval_142276 chr6 140368474 140369031 + 0 NA Intergenic Intergenic 49122 ENSMUSG00000065882.1 ENSMUSG00000065882 ENSMUST00000083948 n-R5s168 rRNA Interval_153709 chr8 4879207 4879515 + 0 NA Intergenic Intergenic 18192 ENSMUSG00000062152.4 ENSMUSG00000062152 ENSMUST00000080279 Rpl21-ps14 processed_pseudogene Interval_3068 chr1 52854069 52854298 + 0 NA intron (ENSMUSG00000041426.12, intron 2 of 2) protein_coding-intron (ENSMUSG00000041426.12, intron 2 of 13) 9254 ENSMUSG00000041426.12 ENSMUSG00000041426 ENSMUST00000162609 Hibch protein_coding Interval_95150 chr2 104348464 104348786 + 0 NA intron (ENSMUSG00000068373.15, intron 1 of 20) protein_coding-intron (ENSMUSG00000068373.15, intron 1 of 20) 57051 ENSMUSG00000081721.3 ENSMUSG00000081721 ENSMUST00000120886 Gm13882 processed_pseudogene Interval_56959 chr14 124094557 124095251 + 0 NA intron (ENSMUSG00000025551.13, intron 3 of 4) protein_coding-intron (ENSMUSG00000025551.13, intron 3 of 4) 107269 ENSMUSG00000099994.1 ENSMUSG00000099994 ENSMUST00000190088 1700024B18Rik antisense Interval_169807 chr9 101949779 101950815 + 0 NA intron (ENSMUSG00000032537.15, intron 11 of 14) protein_coding-intron (ENSMUSG00000032537.15, intron 12 of 15) -9398 ENSMUSG00000032537.15 ENSMUSG00000032537 ENSMUST00000149800 Ephb1 protein_coding Interval_89986 chr2 27079109 27079317 + 0 NA promoter-TSS (ENSMUSG00000036040.14) protein_coding-promoter-TSS (ENSMUSG00000036040.14) -11345 ENSMUSG00000009214.9 ENSMUSG00000009214 ENSMUST00000163967 Mymk protein_coding Interval_114356 chr4 74245823 74246212 + 0 NA intron (ENSMUSG00000028397.13, intron 1 of 21) protein_coding-intron (ENSMUSG00000028397.13, intron 1 of 21) 5697 ENSMUSG00000085482.1 ENSMUSG00000085482 ENSMUST00000126646 A230083N12Rik antisense Interval_134047 chr6 18029746 18032702 + 0 NA promoter-TSS (ENSMUSG00000010797.6) protein_coding-promoter-TSS (ENSMUSG00000010797.6) -639 ENSMUSG00000010797.6 ENSMUSG00000010797 ENSMUST00000010941 Wnt2 protein_coding Interval_155884 chr8 40617383 40618505 + 0 NA intron (ENSMUSG00000039431.16, intron 1 of 11) protein_coding-intron (ENSMUSG00000039431.16, intron 1 of 14) 16853 ENSMUSG00000039431.16 ENSMUSG00000039431 ENSMUST00000174537 Mtmr7 protein_coding Interval_117644 chr4 125220301 125220642 + 0 NA Intergenic Intergenic -8126 ENSMUSG00000087010.1 ENSMUSG00000087010 ENSMUST00000130055 1700041M05Rik lincRNA Interval_53036 chr14 53729520 53729871 + 0 NA intron (ENSMUSG00000082663.2, intron 1 of 1) TR_V_pseudogene-intron (ENSMUSG00000082663.2, intron 1 of 1) 137 ENSMUSG00000082663.2 ENSMUSG00000082663 ENSMUST00000117226 Trav13-3 TR_V_pseudogene Interval_150261 chr7 109086780 109087155 + 0 NA Intergenic Intergenic -10725 ENSMUSG00000094199.1 ENSMUSG00000094199 ENSMUST00000179144 Gm25450 snRNA Interval_86243 chr19 38042597 38044017 + 0 NA promoter-TSS (ENSMUSG00000048612.16) protein_coding-promoter-TSS (ENSMUSG00000048612.16) 92 ENSMUSG00000048612.16 ENSMUSG00000048612 ENSMUST00000226084 Myof protein_coding Interval_19229 chr10 95634217 95635199 + 0 NA exon (ENSMUSG00000112538.1, exon 1 of 2) lincRNA-exon (ENSMUSG00000112538.1, exon 1 of 2) 225 ENSMUSG00000112538.1 ENSMUSG00000112538 ENSMUST00000218479 Gm47667 lincRNA Interval_61208 chr15 79970228 79971757 + 0 NA exon (ENSMUSG00000053411.16, exon 1 of 6) protein_coding-exon (ENSMUSG00000053411.16, exon 1 of 6) 28034 ENSMUSG00000099222.1 ENSMUSG00000099222 ENSMUST00000183847 Mir7213 miRNA Interval_160586 chr8 110881594 110881934 + 0 NA TTS (ENSMUSG00000033703.9) protein_coding-TTS (ENSMUSG00000033703.9) 20724 ENSMUSG00000033703.9 ENSMUSG00000033703 ENSMUST00000212568 Fcsk protein_coding Interval_160766 chr8 112023806 112024091 + 0 NA Intergenic Intergenic -8940 ENSMUSG00000092086.2 ENSMUSG00000092086 ENSMUST00000071732 Gm6793 processed_pseudogene Interval_71686 chr17 25424165 25425161 + 0 NA intron (ENSMUSG00000024112.16, intron 2 of 8) protein_coding-intron (ENSMUSG00000024112.16, intron 2 of 34) -35191 ENSMUSG00000024112.16 ENSMUSG00000024112 ENSMUST00000159052 Cacna1h protein_coding Interval_165713 chr9 51309530 51310179 + 0 NA intron (ENSMUSG00000036027.13, intron 2 of 4) protein_coding-intron (ENSMUSG00000036027.13, intron 2 of 4) 19070 ENSMUSG00000036027.13 ENSMUSG00000036027 ENSMUST00000238450 1810046K07Rik protein_coding Interval_88588 chr2 6416773 6417314 + 0 NA intron (ENSMUSG00000039046.15, intron 6 of 6) protein_coding-intron (ENSMUSG00000039046.15, intron 6 of 13) -3879 ENSMUSG00000039046.15 ENSMUSG00000039046 ENSMUST00000150515 Usp6nl protein_coding Interval_118345 chr4 130784676 130785196 + 0 NA Intergenic Intergenic -1133 ENSMUSG00000086548.1 ENSMUSG00000086548 ENSMUST00000152986 Gm12972 lincRNA Interval_2463 chr1 39533911 39534235 + 0 NA promoter-TSS (ENSMUSG00000003135.15) protein_coding-promoter-TSS (ENSMUSG00000003135.15) -5961 ENSMUSG00000003135.15 ENSMUSG00000003135 ENSMUST00000195567 Cnot11 protein_coding Interval_123953 chr5 36844409 36845367 + 0 NA Intergenic Intergenic -23775 ENSMUSG00000029120.10 ENSMUSG00000029120 ENSMUST00000138124 Ppp2r2c protein_coding Interval_57240 chr15 8068088 8068643 + 0 NA intron (ENSMUSG00000039828.7, intron 5 of 17) protein_coding-intron (ENSMUSG00000039828.7, intron 5 of 17) 30844 ENSMUSG00000039828.7 ENSMUSG00000039828 ENSMUST00000227371 Wdr70 protein_coding Interval_153687 chr8 4611884 4613920 + 0 NA promoter-TSS (ENSMUSG00000058748.9) protein_coding-promoter-TSS (ENSMUSG00000058748.9) -265 ENSMUSG00000058748.9 ENSMUSG00000058748 ENSMUST00000073201 Zfp958 protein_coding Interval_88671 chr2 9493600 9494158 + 0 NA Intergenic Intergenic -81957 ENSMUSG00000081202.1 ENSMUSG00000081202 ENSMUST00000121535 Gm13220 processed_pseudogene Interval_82157 chr18 68148078 68149079 + 0 NA intron (ENSMUSG00000024544.9, intron 3 of 5) protein_coding-intron (ENSMUSG00000024544.9, intron 3 of 5) 20389 ENSMUSG00000118306.1 ENSMUSG00000118306 ENSMUST00000237336 Gm18149 processed_pseudogene Interval_161782 chr8 122745755 122746154 + 0 NA intron (ENSMUSG00000110523.1, intron 1 of 2) protein_coding-intron (ENSMUSG00000092329.1, intron 1 of 15) 6371 ENSMUSG00000110523.1 ENSMUSG00000110523 ENSMUST00000212334 C230057M02Rik lincRNA Interval_30931 chr11 97269973 97270740 + 0 NA intron (ENSMUSG00000001441.13, intron 1 of 21) protein_coding-intron (ENSMUSG00000001441.13, intron 1 of 22) -9772 ENSMUSG00000086680.2 ENSMUSG00000086680 ENSMUST00000133160 Gm11592 antisense Interval_168308 chr9 78552601 78554430 + 0 NA intron (ENSMUSG00000049624.14, intron 8 of 10) protein_coding-intron (ENSMUSG00000049624.14, intron 8 of 10) 32969 ENSMUSG00000111417.1 ENSMUSG00000111417 ENSMUST00000214586 Gm47430 lincRNA Interval_92567 chr2 60747602 60748384 + 0 NA Intergenic Intergenic -74267 ENSMUSG00000026971.15 ENSMUSG00000026971 ENSMUST00000142696 Itgb6 protein_coding Interval_23337 chr11 21528326 21528550 + 0 NA Intergenic Intergenic -20720 ENSMUSG00000078962.4 ENSMUSG00000078962 ENSMUST00000165732 4932414J04Rik lincRNA Interval_24034 chr11 29672601 29672818 + 0 NA Intergenic Intergenic 17126 ENSMUSG00000083917.1 ENSMUSG00000083917 ENSMUST00000120906 Gm12093 processed_pseudogene Interval_9054 chr1 153315737 153317163 + 0 NA intron (ENSMUSG00000026478.14, intron 1 of 27) protein_coding-intron (ENSMUSG00000026478.14, intron 1 of 27) 11018 ENSMUSG00000079138.3 ENSMUSG00000079138 ENSMUST00000110797 Gm8818 processed_pseudogene Interval_109456 chr3 142640001 142640640 + 0 NA Intergenic Intergenic -16374 ENSMUSG00000098871.1 ENSMUSG00000098871 ENSMUST00000183426 Mir6381 miRNA Interval_20586 chr10 119223353 119224313 + 0 NA intron (ENSMUSG00000020114.12, intron 2 of 4) protein_coding-intron (ENSMUSG00000020114.12, intron 2 of 14) -11224 ENSMUSG00000020114.12 ENSMUSG00000020114 ENSMUST00000126373 Cand1 protein_coding Interval_107981 chr3 118680628 118681017 + 0 NA intron (ENSMUSG00000033308.16, intron 3 of 4) protein_coding-intron (ENSMUSG00000033308.16, intron 3 of 22) 118636 ENSMUSG00000033308.16 ENSMUSG00000033308 ENSMUST00000129148 Dpyd protein_coding Interval_118166 chr4 129311887 129312868 + 0 NA intron (ENSMUSG00000057236.10, intron 11 of 11) protein_coding-intron (ENSMUSG00000057236.10, intron 11 of 11) 22872 ENSMUSG00000057236.10 ENSMUSG00000057236 ENSMUST00000135585 Rbbp4 protein_coding Interval_12688 chr10 4327655 4328121 + 0 NA intron (ENSMUSG00000038587.10, intron 2 of 3) protein_coding-intron (ENSMUSG00000038587.10, intron 2 of 3) -6657 ENSMUSG00000038587.10 ENSMUSG00000038587 ENSMUST00000215696 Akap12 protein_coding Interval_155393 chr8 33198484 33199820 + 0 NA Intergenic Intergenic -6856 ENSMUSG00000083557.1 ENSMUSG00000083557 ENSMUST00000119347 Gm6877 processed_pseudogene Interval_169982 chr9 103397779 103398881 + 0 NA Intergenic Intergenic -10839 ENSMUSG00000101419.1 ENSMUSG00000101419 ENSMUST00000188687 Gm29600 processed_pseudogene Interval_149825 chr7 101833238 101833768 + 0 NA TTS (ENSMUSG00000032737.13) protein_coding-TTS (ENSMUSG00000032737.13) 3100 ENSMUSG00000032737.13 ENSMUSG00000032737 ENSMUST00000209481 Inppl1 protein_coding Interval_85515 chr19 27768368 27768815 + 0 NA exon (ENSMUSG00000040929.17, exon 16 of 16) protein_coding-exon (ENSMUSG00000040929.17, exon 16 of 16) -64584 ENSMUSG00000088266.1 ENSMUSG00000088266 ENSMUST00000157641 Gm24782 snoRNA Interval_93308 chr2 71823888 71824202 + 0 NA intron (ENSMUSG00000027111.16, intron 6 of 25) protein_coding-intron (ENSMUSG00000027111.16, intron 5 of 25) 36906 ENSMUSG00000027111.16 ENSMUSG00000027111 ENSMUST00000139760 Itga6 protein_coding Interval_65759 chr16 27586287 27586622 + 0 NA Intergenic Intergenic 197585 ENSMUSG00000038127.15 ENSMUSG00000038127 ENSMUST00000149077 Ccdc50 protein_coding Interval_40554 chr12 105698853 105700056 + 0 NA TTS (ENSMUSG00000044715.7) protein_coding-TTS (ENSMUSG00000044715.7) 14053 ENSMUSG00000044715.7 ENSMUSG00000044715 ENSMUST00000222841 Gskip protein_coding Interval_153702 chr8 4765819 4766334 + 0 NA intron (ENSMUSG00000022322.8, intron 2 of 2) protein_coding-intron (ENSMUSG00000022322.8, intron 3 of 12) -11966 ENSMUSG00000109462.1 ENSMUSG00000109462 ENSMUST00000207083 Gm6334 processed_pseudogene Interval_103812 chr3 53207223 53207569 + 0 NA intron (ENSMUSG00000048332.13, intron 2 of 3) protein_coding-intron (ENSMUSG00000048332.13, intron 2 of 3) -21929 ENSMUSG00000048332.13 ENSMUSG00000048332 ENSMUST00000196913 Lhfp protein_coding Interval_152306 chr7 131592089 131592288 + 0 NA intron (ENSMUSG00000030849.18, intron 2 of 6) protein_coding-intron (ENSMUSG00000030849.18, intron 2 of 6) 22800 ENSMUSG00000062758.6 ENSMUSG00000062758 ENSMUST00000085365 Gm16477 processed_pseudogene Interval_35803 chr12 30061179 30062679 + 0 NA exon (ENSMUSG00000085472.1, exon 3 of 3) antisense-exon (ENSMUSG00000085472.1, exon 3 of 3) 2272 ENSMUSG00000085472.1 ENSMUSG00000085472 ENSMUST00000138626 Gm15691 antisense Interval_21486 chr10 128865858 128866467 + 0 NA intron (ENSMUSG00000078427.3, intron 10 of 11) protein_coding-intron (ENSMUSG00000078427.3, intron 9 of 10) 25556 ENSMUSG00000025352.6 ENSMUSG00000025352 ENSMUST00000026408 Gdf11 protein_coding Interval_91043 chr2 34644252 34645230 + 0 NA Intergenic Intergenic 5499 ENSMUSG00000087635.3 ENSMUSG00000087635 ENSMUST00000117516 Gm13414 processed_pseudogene Interval_144694 chr7 27571573 27572711 + 0 NA exon (ENSMUSG00000049643.15, exon 5 of 5) protein_coding-exon (ENSMUSG00000049643.15, exon 5 of 5) 18875 ENSMUSG00000049643.15 ENSMUSG00000049643 ENSMUST00000186501 2310022A10Rik protein_coding Interval_101731 chr3 9243602 9244614 + 0 NA Intergenic Intergenic -6494 ENSMUSG00000069114.8 ENSMUSG00000069114 ENSMUST00000155203 Zbtb10 protein_coding Interval_135523 chr6 39941590 39942078 + 0 NA intron (ENSMUSG00000057716.7, intron 1 of 3) protein_coding-intron (ENSMUSG00000057716.7, intron 1 of 3) -69863 ENSMUSG00000097406.1 ENSMUSG00000097406 ENSMUST00000180899 Gm26833 antisense Interval_68642 chr16 82918125 82918965 + 0 NA Intergenic Intergenic 90163 ENSMUSG00000094030.1 ENSMUSG00000094030 ENSMUST00000177665 Gm21833 protein_coding Interval_88788 chr2 10782956 10783334 + 0 NA Intergenic Intergenic -110564 ENSMUSG00000103237.1 ENSMUSG00000103237 ENSMUST00000192439 Gm18547 processed_pseudogene Interval_143072 chr6 149074368 149074971 + 0 NA promoter-TSS (ENSMUSG00000065198.1) snRNA-promoter-TSS (ENSMUSG00000065198.1) -563 ENSMUSG00000065198.1 ENSMUSG00000065198 ENSMUST00000083264 Gm23462 snRNA Interval_106463 chr3 96526827 96528447 + 0 NA intron (ENSMUSG00000038403.10, intron 3 of 3) protein_coding-intron (ENSMUSG00000038403.10, intron 3 of 3) 2465 ENSMUSG00000038403.10 ENSMUSG00000038403 ENSMUST00000049208 Hjv protein_coding Interval_38696 chr12 81158127 81158360 + 0 NA intron (ENSMUSG00000021136.13, intron 7 of 11) protein_coding-intron (ENSMUSG00000021136.13, intron 7 of 12) -7908 ENSMUSG00000092673.1 ENSMUSG00000092673 ENSMUST00000174932 Mir3067 miRNA Interval_152182 chr7 130494551 130494996 + 0 NA intron (ENSMUSG00000030850.17, intron 7 of 11) protein_coding-intron (ENSMUSG00000030850.17, intron 7 of 11) 24688 ENSMUSG00000030850.17 ENSMUSG00000030850 ENSMUST00000207141 Ate1 protein_coding Interval_104845 chr3 75860841 75862478 + 0 NA Intergenic Intergenic -90465 ENSMUSG00000103024.1 ENSMUSG00000103024 ENSMUST00000193507 Gm37685 TEC Interval_156386 chr8 47858832 47859219 + 0 NA intron (ENSMUSG00000031563.8, intron 14 of 22) protein_coding-intron (ENSMUSG00000031563.8, intron 14 of 22) 34543 ENSMUSG00000038064.7 ENSMUSG00000038064 ENSMUST00000038693 Cldn22 protein_coding Interval_98268 chr2 150666972 150668696 + 0 NA exon (ENSMUSG00000087406.1, exon 1 of 2) processed_transcript-exon (ENSMUSG00000087406.1, exon 1 of 2) 340 ENSMUSG00000087406.1 ENSMUSG00000087406 ENSMUST00000145525 E130215H24Rik processed_transcript Interval_163395 chr9 21241467 21241664 + 0 NA Intergenic Intergenic -2204 ENSMUSG00000003308.15 ENSMUSG00000003308 ENSMUST00000193247 Keap1 protein_coding Interval_74586 chr17 53551493 53552411 + 0 NA Intergenic Intergenic -12501 ENSMUSG00000044957.3 ENSMUSG00000044957 ENSMUST00000056198 Pp2d1 protein_coding Interval_148515 chr7 82049182 82049440 + 0 NA Intergenic Intergenic -21076 ENSMUSG00000109145.1 ENSMUSG00000109145 ENSMUST00000208972 Gm20744 lincRNA Interval_36367 chr12 42151380 42152481 + 0 NA promoter-TSS (ENSMUSG00000112898.1) lincRNA-promoter-TSS (ENSMUSG00000112898.1) -90 ENSMUSG00000112898.1 ENSMUSG00000112898 ENSMUST00000219118 Gm47020 lincRNA Interval_86619 chr19 42085967 42086514 + 0 NA exon (ENSMUSG00000049670.9, exon 1 of 5) protein_coding-exon (ENSMUSG00000049670.9, exon 1 of 5) -7107 ENSMUSG00000049670.9 ENSMUSG00000049670 ENSMUST00000051772 Morn4 protein_coding Interval_135884 chr6 48406421 48406753 + 0 NA intron (ENSMUSG00000042810.14, intron 6 of 17) protein_coding-intron (ENSMUSG00000042810.14, intron 5 of 15) -6749 ENSMUSG00000042810.14 ENSMUSG00000042810 ENSMUST00000204554 Krba1 protein_coding Interval_86173 chr19 37539649 37540270 + 0 NA intron (ENSMUSG00000053799.8, intron 2 of 22) protein_coding-intron (ENSMUSG00000053799.8, intron 2 of 22) 19080 ENSMUSG00000053799.8 ENSMUSG00000053799 ENSMUST00000238817 Exoc6 protein_coding Interval_70064 chr17 5098737 5099118 + 0 NA TTS (ENSMUSG00000069729.14) protein_coding-TTS (ENSMUSG00000069729.14) 13183 ENSMUSG00000081783.2 ENSMUSG00000081783 ENSMUST00000122283 Gm15599 processed_pseudogene Interval_132788 chr5 147877177 147878233 + 0 NA TTS (ENSMUSG00000029650.10) protein_coding-TTS (ENSMUSG00000029650.10) 2164 ENSMUSG00000029650.10 ENSMUSG00000029650 ENSMUST00000138244 Slc46a3 protein_coding Interval_112 GL456239.1 13513 14331 + 0 NA NA NA NA NA Interval_60638 chr15 75861990 75863077 + 0 NA intron (ENSMUSG00000022575.5, intron 1 of 1) protein_coding-intron (ENSMUSG00000022575.5, intron 1 of 10) -4057 ENSMUSG00000022575.5 ENSMUSG00000022575 ENSMUST00000231170 Gsdmd protein_coding Interval_50788 chr14 19853318 19854087 + 0 NA Intergenic Intergenic -13278 ENSMUSG00000114436.1 ENSMUSG00000114436 ENSMUST00000224546 Gm48283 lincRNA Interval_95734 chr2 115515092 115515309 + 0 NA intron (ENSMUSG00000085582.7, intron 1 of 3) lincRNA-intron (ENSMUSG00000085582.7, intron 1 of 3) 12544 ENSMUSG00000085582.7 ENSMUSG00000085582 ENSMUST00000125147 3110099E03Rik lincRNA Interval_155859 chr8 40329736 40330545 + 0 NA intron (ENSMUSG00000039478.15, intron 1 of 14) protein_coding-intron (ENSMUSG00000039478.15, intron 1 of 14) -21809 ENSMUSG00000031603.14 ENSMUSG00000031603 ENSMUST00000118639 Fgf20 protein_coding Interval_146996 chr7 57508932 57510590 + 0 NA promoter-TSS (ENSMUSG00000055078.7) protein_coding-promoter-TSS (ENSMUSG00000055078.7) 298 ENSMUSG00000055078.7 ENSMUSG00000055078 ENSMUST00000206734 Gabra5 protein_coding Interval_130911 chr5 133983045 133984783 + 0 NA Intergenic Intergenic -63912 ENSMUSG00000104893.1 ENSMUSG00000104893 ENSMUST00000196197 Gm2404 processed_pseudogene Interval_167274 chr9 66958645 66958858 + 0 NA intron (ENSMUSG00000032370.8, intron 4 of 4) protein_coding-intron (ENSMUSG00000032370.8, intron 5 of 5) 12585 ENSMUSG00000036781.13 ENSMUSG00000036781 ENSMUST00000123931 Rps27l protein_coding Interval_169793 chr9 101444795 101444994 + 0 NA Intergenic Intergenic 4459 ENSMUSG00000061486.7 ENSMUSG00000061486 ENSMUST00000075243 Gm5161 processed_pseudogene Interval_61677 chr15 83340156 83340497 + 0 NA intron (ENSMUSG00000054277.8, intron 2 of 15) protein_coding-intron (ENSMUSG00000054277.8, intron 2 of 15) -7059 ENSMUSG00000054277.8 ENSMUSG00000054277 ENSMUST00000227511 Arfgap3 protein_coding Interval_80415 chr18 42010828 42011337 + 0 NA Intergenic Intergenic -12033 ENSMUSG00000073574.4 ENSMUSG00000073574 ENSMUST00000097591 Grxcr2 protein_coding Interval_156035 chr8 43082841 43083034 + 0 NA Intergenic Intergenic -2650 ENSMUSG00000109627.1 ENSMUSG00000109627 ENSMUST00000209715 Gm45590 processed_pseudogene Interval_51035 chr14 21698303 21698609 + 0 NA intron (ENSMUSG00000063821.6, intron 1 of 2) protein_coding-intron (ENSMUSG00000063821.6, intron 2 of 3) 4646 ENSMUSG00000063821.6 ENSMUSG00000063821 ENSMUST00000224735 Dupd1 protein_coding Interval_6085 chr1 96593696 96594539 + 0 NA Intergenic Intergenic -22982 ENSMUSG00000095610.1 ENSMUSG00000095610 ENSMUST00000178491 Gm26245 snRNA Interval_96205 chr2 120528248 120528441 + 0 NA TTS (ENSMUSG00000027288.16) protein_coding-TTS (ENSMUSG00000027288.16) 11516 ENSMUSG00000027288.16 ENSMUSG00000027288 ENSMUST00000147353 Zfp106 protein_coding Interval_8246 chr1 136706737 136708471 + 0 NA intron (ENSMUSG00000097448.1, intron 2 of 4) lincRNA-intron (ENSMUSG00000097448.1, intron 2 of 4) 10230 ENSMUSG00000092912.1 ENSMUSG00000092912 ENSMUST00000175171 Gm24086 snRNA Interval_92602 chr2 61245899 61247828 + 0 NA Intergenic Intergenic 22071 ENSMUSG00000083197.1 ENSMUSG00000083197 ENSMUST00000120675 Gm13581 processed_pseudogene Interval_38820 chr12 82789118 82789921 + 0 NA intron (ENSMUSG00000021219.16, intron 2 of 16) protein_coding-intron (ENSMUSG00000021219.16, intron 1 of 14) -17063 ENSMUSG00000104848.1 ENSMUSG00000104848 ENSMUST00000196259 Gm22149 snoRNA Interval_86801 chr19 43952963 43953352 + 0 NA Intergenic Intergenic 15536 ENSMUSG00000025196.4 ENSMUSG00000025196 ENSMUST00000131882 Cpn1 protein_coding Interval_155018 chr8 25737892 25738122 + 0 NA intron (ENSMUSG00000061313.8, intron 10 of 12) protein_coding-intron (ENSMUSG00000061313.8, intron 11 of 17) 7573 ENSMUSG00000110127.1 ENSMUSG00000110127 ENSMUST00000210843 6430710M23Rik TEC Interval_131471 chr5 137431923 137434279 + 0 NA exon (ENSMUSG00000106476.1, exon 1 of 1) processed_pseudogene-exon (ENSMUSG00000106476.1, exon 1 of 1) 114 ENSMUSG00000106476.1 ENSMUSG00000106476 ENSMUST00000196458 Rpl36-ps9 processed_pseudogene Interval_13407 chr10 17869613 17870578 + 0 NA intron (ENSMUSG00000039879.9, intron 2 of 2) protein_coding-intron (ENSMUSG00000039879.9, intron 2 of 2) 45107 ENSMUSG00000039879.9 ENSMUSG00000039879 ENSMUST00000218268 Heca protein_coding Interval_6518 chr1 114061814 114062570 + 0 NA Intergenic Intergenic -98058 ENSMUSG00000097648.1 ENSMUSG00000097648 ENSMUST00000180837 9330185C12Rik lincRNA Interval_105631 chr3 88242322 88242863 + 0 NA TTS (ENSMUSG00000103766.5) protein_coding-TTS (ENSMUSG00000103766.5) 12117 ENSMUSG00000104445.1 ENSMUSG00000104445 ENSMUST00000171887 Rhbg protein_coding Interval_91898 chr2 51095839 51096808 + 0 NA Intergenic Intergenic 52787 ENSMUSG00000017144.8 ENSMUSG00000017144 ENSMUST00000140864 Rnd3 protein_coding Interval_118596 chr4 132695120 132695312 + 0 NA TTS (ENSMUSG00000028886.15) protein_coding-TTS (ENSMUSG00000028886.15) 37312 ENSMUSG00000037752.4 ENSMUSG00000037752 ENSMUST00000143642 Xkr8 protein_coding Interval_131005 chr5 134507449 134507724 + 0 NA intron (ENSMUSG00000063146.11, intron 8 of 16) protein_coding-intron (ENSMUSG00000063146.11, intron 8 of 15) 8692 ENSMUSG00000063146.11 ENSMUSG00000063146 ENSMUST00000202408 Clip2 protein_coding Interval_134947 chr6 34029037 34030130 + 0 NA exon (ENSMUSG00000056215.13, exon 1 of 20) protein_coding-exon (ENSMUSG00000056215.13, exon 1 of 20) 135 ENSMUSG00000056215.13 ENSMUSG00000056215 ENSMUST00000141078 Lrguk protein_coding Interval_52836 chr14 50969646 50969949 + 0 NA Intergenic Intergenic 9139 ENSMUSG00000115312.1 ENSMUSG00000115312 ENSMUST00000228819 Gm8518 processed_pseudogene Interval_5620 chr1 90275470 90276697 + 0 NA Intergenic Intergenic -4375 ENSMUSG00000101028.1 ENSMUSG00000101028 ENSMUST00000188640 Gm28723 lincRNA Interval_161607 chr8 121546750 121547603 + 0 NA exon (ENSMUSG00000097424.2, exon 2 of 3) bidirectional_promoter_lncRNA-exon (ENSMUSG00000097424.2, exon 2 of 3) 2788 ENSMUSG00000097424.2 ENSMUSG00000097424 ENSMUST00000181679 1700030M09Rik bidirectional_promoter_lncRNA Interval_23634 chr11 23988310 23988674 + 0 NA Intergenic Intergenic -26163 ENSMUSG00000104783.1 ENSMUSG00000104783 ENSMUST00000199670 Gm44381 miRNA Interval_105609 chr3 88087503 88087941 + 0 NA TTS (ENSMUSG00000028068.14) protein_coding-TTS (ENSMUSG00000028068.14) 5694 ENSMUSG00000028068.14 ENSMUSG00000028068 ENSMUST00000194772 Iqgap3 protein_coding Interval_169597 chr9 99376304 99378067 + 0 NA Intergenic Intergenic 10152 ENSMUSG00000100123.1 ENSMUSG00000100123 ENSMUST00000189195 Gm28087 lincRNA Interval_5889 chr1 92985247 92985746 + 0 NA TTS (ENSMUSG00000026271.15) protein_coding-TTS (ENSMUSG00000026271.15) 17275 ENSMUSG00000100021.1 ENSMUSG00000100021 ENSMUST00000191179 Gm18697 processed_pseudogene Interval_120394 chr4 148327124 148327445 + 0 NA Intergenic Intergenic 20431 ENSMUSG00000087027.2 ENSMUSG00000087027 ENSMUST00000129579 Gm13206 lincRNA Interval_62150 chr15 88247920 88248640 + 0 NA Intergenic Intergenic -66594 ENSMUSG00000116331.1 ENSMUSG00000116331 ENSMUST00000230919 B230214G05Rik lincRNA Interval_13546 chr10 19372164 19372563 + 0 NA Intergenic Intergenic 15830 ENSMUSG00000045591.6 ENSMUSG00000045591 ENSMUST00000053225 Olig3 protein_coding Interval_96285 chr2 121294108 121296334 + 0 NA promoter-TSS (ENSMUSG00000027254.13) protein_coding-promoter-TSS (ENSMUSG00000027254.13) -242 ENSMUSG00000027254.13 ENSMUSG00000027254 ENSMUST00000133283 Map1a protein_coding Interval_91988 chr2 52142328 52142598 + 0 NA intron (ENSMUSG00000026950.18, intron 164 of 164) protein_coding-intron (ENSMUSG00000026950.18, intron 73 of 73) 30330 ENSMUSG00000036202.16 ENSMUSG00000036202 ENSMUST00000152178 Rif1 protein_coding Interval_79887 chr18 35748727 35749073 + 0 NA Intergenic Intergenic -8421 ENSMUSG00000024349.10 ENSMUSG00000024349 ENSMUST00000237405 Sting1 protein_coding Interval_104807 chr3 74075613 74076182 + 0 NA Intergenic Intergenic -58620 ENSMUSG00000104096.1 ENSMUSG00000104096 ENSMUST00000193390 Gm20356 lincRNA Interval_48602 chr13 100600401 100601655 + 0 NA exon (ENSMUSG00000021636.15, exon 4 of 7) protein_coding-exon (ENSMUSG00000021636.15, exon 4 of 7) -3331 ENSMUSG00000065678.1 ENSMUSG00000065678 ENSMUST00000083744 Gm24261 snRNA Interval_67679 chr16 55910055 55910687 + 0 NA intron (ENSMUSG00000022604.18, intron 10 of 10) protein_coding-intron (ENSMUSG00000022604.18, intron 10 of 10) -15086 ENSMUSG00000075033.4 ENSMUSG00000075033 ENSMUST00000099705 Nxpe3 protein_coding Interval_168485 chr9 82257147 82257357 + 0 NA intron (ENSMUSG00000111697.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000111697.1, intron 1 of 2) 2956 ENSMUSG00000111697.1 ENSMUSG00000111697 ENSMUST00000214348 Gm35548 lincRNA Interval_45341 chr13 54568445 54568760 + 0 NA Intergenic Intergenic -3269 ENSMUSG00000025871.18 ENSMUSG00000025871 ENSMUST00000126295 4833439L19Rik protein_coding Interval_5732 chr1 91319816 91320493 + 0 NA exon (ENSMUSG00000026307.12, exon 12 of 12) protein_coding-exon (ENSMUSG00000026307.12, exon 12 of 12) 947 ENSMUSG00000090322.1 ENSMUSG00000090322 ENSMUST00000171768 Gm17090 antisense Interval_74548 chr17 53251384 53251624 + 0 NA Intergenic Intergenic 5541 ENSMUSG00000117194.1 ENSMUSG00000117194 ENSMUST00000233695 Gm49913 processed_pseudogene Interval_27496 chr11 68244857 68245105 + 0 NA intron (ENSMUSG00000020902.12, intron 6 of 7) protein_coding-intron (ENSMUSG00000020902.12, intron 5 of 6) 24089 ENSMUSG00000099174.1 ENSMUSG00000099174 ENSMUST00000183592 Mir6406 miRNA Interval_46819 chr13 71491513 71491950 + 0 NA intron (ENSMUSG00000113358.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000113358.1, intron 1 of 1) 4124 ENSMUSG00000113358.1 ENSMUSG00000113358 ENSMUST00000221719 1700112M02Rik lincRNA Interval_26868 chr11 61192820 61194009 + 0 NA Intergenic Intergenic 12761 ENSMUSG00000082626.1 ENSMUSG00000082626 ENSMUST00000117939 Rps13-ps5 processed_pseudogene Interval_13017 chr10 9331503 9332426 + 0 NA intron (ENSMUSG00000112019.1, intron 4 of 4) lincRNA-intron (ENSMUSG00000112019.1, intron 4 of 4) 4654 ENSMUSG00000112019.1 ENSMUSG00000112019 ENSMUST00000220435 Gm48748 lincRNA Interval_43366 chr13 29746481 29746913 + 0 NA intron (ENSMUSG00000006191.17, intron 5 of 10) protein_coding-intron (ENSMUSG00000006191.17, intron 5 of 15) -193586 ENSMUSG00000086893.1 ENSMUSG00000086893 ENSMUST00000144277 Gm11365 antisense Interval_127931 chr5 109466648 109468127 + 0 NA Intergenic Intergenic -6009 ENSMUSG00000105303.1 ENSMUSG00000105303 ENSMUST00000197935 Gm18555 processed_pseudogene Interval_22703 chr11 13433227 13434274 + 0 NA Intergenic Intergenic 436084 ENSMUSG00000084055.1 ENSMUSG00000084055 ENSMUST00000117869 Gm12004 processed_pseudogene Interval_33387 chr11 116267785 116268274 + 0 NA intron (ENSMUSG00000020780.15, intron 2 of 14) protein_coding-intron (ENSMUSG00000020780.15, intron 3 of 15) -6691 ENSMUSG00000020780.15 ENSMUSG00000020780 ENSMUST00000128808 Srp68 protein_coding Interval_134113 chr6 20569085 20569444 + 0 NA Intergenic Intergenic 401726 ENSMUSG00000106763.1 ENSMUSG00000106763 ENSMUST00000201133 Gm19102 processed_pseudogene Interval_163447 chr9 21483299 21483599 + 0 NA intron (ENSMUSG00000033335.17, intron 11 of 19) protein_coding-intron (ENSMUSG00000033335.17, intron 11 of 20) 13115 ENSMUSG00000065547.1 ENSMUSG00000065547 ENSMUST00000083613 Mir199a-1 miRNA Interval_73055 chr17 34511677 34512012 + 0 NA intron (ENSMUSG00000092618.2, intron 7 of 8) protein_coding-intron (ENSMUSG00000092618.2, intron 7 of 8) 5508 ENSMUSG00000092618.2 ENSMUSG00000092618 ENSMUST00000075483 Btnl6 protein_coding Interval_90785 chr2 32601458 32603041 + 0 NA intron (ENSMUSG00000026811.18, intron 1 of 4) protein_coding-intron (ENSMUSG00000026811.18, intron 1 of 4) -4791 ENSMUSG00000026811.18 ENSMUSG00000026811 ENSMUST00000128811 St6galnac6 protein_coding Interval_32782 chr11 110540133 110540329 + 0 NA Intergenic Intergenic -4276 ENSMUSG00000085985.1 ENSMUSG00000085985 ENSMUST00000144689 Gm11682 lincRNA Interval_121961 chr5 12594999 12595213 + 0 NA Intergenic Intergenic 40474 ENSMUSG00000104632.1 ENSMUSG00000104632 ENSMUST00000196982 Gm42909 TEC Interval_165196 chr9 45171071 45171809 + 0 NA Intergenic Intergenic -1494 ENSMUSG00000111811.1 ENSMUSG00000111811 ENSMUST00000215874 Gm39327 lincRNA Interval_4353 chr1 72896831 72897292 + 0 NA Intergenic Intergenic -22786 ENSMUSG00000026185.8 ENSMUSG00000026185 ENSMUST00000137339 Igfbp5 protein_coding Interval_134575 chr6 29693825 29694728 + 0 NA promoter-TSS (ENSMUSG00000001763.14) protein_coding-promoter-TSS (ENSMUSG00000001763.14) -13752 ENSMUSG00000001763.14 ENSMUSG00000001763 ENSMUST00000137925 Tspan33 protein_coding Interval_25587 chr11 49974861 49975086 + 0 NA intron (ENSMUSG00000020374.16, intron 6 of 6) protein_coding-intron (ENSMUSG00000020374.16, intron 11 of 13) 11188 ENSMUSG00000020374.16 ENSMUSG00000020374 ENSMUST00000109172 Rasgef1c protein_coding Interval_36702 chr12 52254084 52254382 + 0 NA intron (ENSMUSG00000035142.18, intron 5 of 5) protein_coding-intron (ENSMUSG00000035142.18, intron 6 of 10) 78146 ENSMUSG00000035142.18 ENSMUSG00000035142 ENSMUST00000162111 Nubpl protein_coding Interval_139874 chr6 112205508 112206474 + 0 NA Intergenic Intergenic -4717 ENSMUSG00000100219.1 ENSMUSG00000100219 ENSMUST00000186102 1700054K19Rik lincRNA Interval_68633 chr16 82251920 82252141 + 0 NA Intergenic Intergenic 79739 ENSMUSG00000116937.1 ENSMUSG00000116937 ENSMUST00000232378 Gm41480 lincRNA Interval_125419 chr5 66933242 66933833 + 0 NA intron (ENSMUSG00000037736.20, intron 1 of 4) protein_coding-intron (ENSMUSG00000037736.20, intron 3 of 25) 17529 ENSMUSG00000106749.1 ENSMUSG00000106749 ENSMUST00000202522 Gm43281 TEC Interval_91206 chr2 35914977 35915180 + 0 NA intron (ENSMUSG00000026885.13, intron 2 of 7) protein_coding-intron (ENSMUSG00000026885.13, intron 3 of 9) 37336 ENSMUSG00000026885.13 ENSMUSG00000026885 ENSMUST00000162172 Ttll11 protein_coding Interval_159819 chr8 104068357 104069845 + 0 NA Intergenic Intergenic -2048 ENSMUSG00000110019.1 ENSMUSG00000110019 ENSMUST00000211125 Gm8748 processed_pseudogene Interval_114759 chr4 84794669 84795017 + 0 NA Intergenic Intergenic 53368 ENSMUSG00000086413.1 ENSMUSG00000086413 ENSMUST00000141637 Gm12415 lincRNA Interval_162988 chr9 14233280 14235036 + 0 NA Intergenic Intergenic 16781 ENSMUSG00000111695.1 ENSMUSG00000111695 ENSMUST00000216064 Gm47565 lincRNA Interval_32573 chr11 108722649 108722833 + 0 NA intron (ENSMUSG00000020728.17, intron 1 of 3) protein_coding-intron (ENSMUSG00000020728.17, intron 22 of 27) 6258 ENSMUSG00000083723.1 ENSMUSG00000083723 ENSMUST00000118777 Rpl23a-ps14 processed_pseudogene Interval_94638 chr2 92914660 92915525 + 0 NA promoter-TSS (ENSMUSG00000027220.2) protein_coding-promoter-TSS (ENSMUSG00000027220.2) -6 ENSMUSG00000027220.2 ENSMUSG00000027220 ENSMUST00000028648 Syt13 protein_coding Interval_162984 chr9 14188023 14188805 + 0 NA Intergenic Intergenic -15669 ENSMUSG00000111803.1 ENSMUSG00000111803 ENSMUST00000216569 Gm47564 lincRNA Interval_174741 chrX 164459227 164459427 + 0 NA TTS (ENSMUSG00000031382.14) protein_coding-TTS (ENSMUSG00000031382.14) -3889 ENSMUSG00000081931.1 ENSMUSG00000081931 ENSMUST00000118932 Gm15211 processed_pseudogene Interval_75354 chr17 66086364 66086570 + 0 NA TTS (ENSMUSG00000094158.1) snRNA-TTS (ENSMUSG00000094158.1) 373 ENSMUSG00000094158.1 ENSMUSG00000094158 ENSMUST00000083372 Gm23264 snRNA Interval_39926 chr12 99836569 99836967 + 0 NA intron (ENSMUSG00000113147.1, intron 3 of 3) protein_coding-intron (ENSMUSG00000021176.6, intron 5 of 5) -4549 ENSMUSG00000113540.1 ENSMUSG00000113540 ENSMUST00000222111 Gm47206 TEC Interval_86893 chr19 44674748 44675119 + 0 NA Intergenic Intergenic 20527 ENSMUSG00000097683.2 ENSMUSG00000097683 ENSMUST00000181365 Gm26644 lincRNA Interval_50390 chr14 12357593 12358200 + 0 NA Intergenic Intergenic -12052 ENSMUSG00000021743.6 ENSMUSG00000021743 ENSMUST00000224023 Fezf2 protein_coding Interval_36411 chr12 44051905 44052224 + 0 NA Intergenic Intergenic -69692 ENSMUSG00000112038.1 ENSMUSG00000112038 ENSMUST00000219963 Gm47056 processed_pseudogene Interval_160562 chr8 110720848 110722309 + 0 NA exon (ENSMUSG00000033763.14, exon 1 of 14) protein_coding-exon (ENSMUSG00000033763.14, exon 1 of 14) -5768 ENSMUSG00000033763.14 ENSMUSG00000033763 ENSMUST00000133848 Mtss2 protein_coding Interval_11137 chr1 179585805 179587131 + 0 NA intron (ENSMUSG00000038949.8, intron 2 of 3) protein_coding-intron (ENSMUSG00000038949.8, intron 2 of 10) 39959 ENSMUSG00000038949.8 ENSMUSG00000038949 ENSMUST00000143270 Cnst protein_coding Interval_49248 chr13 109806332 109806587 + 0 NA intron (ENSMUSG00000021699.17, intron 6 of 15) protein_coding-intron (ENSMUSG00000021699.17, intron 5 of 14) -97350 ENSMUSG00000084651.1 ENSMUSG00000084651 ENSMUST00000122702 Mir1904 miRNA Interval_157148 chr8 66417016 66418565 + 0 NA intron (ENSMUSG00000036469.16, intron 7 of 9) protein_coding-intron (ENSMUSG00000036469.16, intron 1 of 3) 25019 ENSMUSG00000085109.1 ENSMUSG00000085109 ENSMUST00000140669 Gm15356 antisense Interval_66680 chr16 36087538 36087808 + 0 NA intron (ENSMUSG00000075229.11, intron 3 of 4) protein_coding-intron (ENSMUSG00000075229.11, intron 3 of 4) -1531 ENSMUSG00000075229.11 ENSMUSG00000075229 ENSMUST00000231239 Ccdc58 protein_coding Interval_79046 chr18 24161614 24162420 + 0 NA Intergenic Intergenic -40064 ENSMUSG00000047989.11 ENSMUSG00000047989 ENSMUST00000125169 Ino80c protein_coding Interval_13072 chr10 11127835 11129146 + 0 NA Intergenic Intergenic -46240 ENSMUSG00000019828.13 ENSMUSG00000019828 ENSMUST00000156826 Grm1 protein_coding Interval_106668 chr3 98326033 98326492 + 0 NA intron (ENSMUSG00000053398.11, intron 3 of 4) protein_coding-intron (ENSMUSG00000053398.11, intron 5 of 11) 7308 ENSMUSG00000053398.11 ENSMUSG00000053398 ENSMUST00000148488 Phgdh protein_coding Interval_129495 chr5 120558927 120559383 + 0 NA intron (ENSMUSG00000032741.9, intron 3 of 14) protein_coding-intron (ENSMUSG00000032741.9, intron 3 of 27) -6116 ENSMUSG00000106825.1 ENSMUSG00000106825 ENSMUST00000201971 2510016D11Rik TEC Interval_102638 chr3 28748398 28749447 + 0 NA intron (ENSMUSG00000091329.2, intron 1 of 2) antisense-intron (ENSMUSG00000091329.2, intron 1 of 2) -6682 ENSMUSG00000091329.2 ENSMUSG00000091329 ENSMUST00000193387 1700112D23Rik antisense Interval_33243 chr11 115444835 115445239 + 0 NA exon (ENSMUSG00000070332.4, exon 4 of 8) protein_coding-exon (ENSMUSG00000070332.4, exon 4 of 8) 3023 ENSMUSG00000093096.1 ENSMUSG00000093096 ENSMUST00000175355 Mir3968 miRNA Interval_69230 chr16 91554235 91556018 + 0 NA intron (ENSMUSG00000022965.8, intron 2 of 6) protein_coding-intron (ENSMUSG00000022965.8, intron 2 of 6) -6197 ENSMUSG00000022965.8 ENSMUSG00000022965 ENSMUST00000130404 Ifngr2 protein_coding Interval_101015 chr2 174263938 174264540 + 0 NA Intergenic Intergenic 2886 ENSMUSG00000065521.1 ENSMUSG00000065521 ENSMUST00000083587 Mir296 miRNA Interval_3329 chr1 56970941 56973724 + 0 NA promoter-TSS (ENSMUSG00000038331.15) protein_coding-promoter-TSS (ENSMUSG00000038331.15) 0 ENSMUSG00000087022.4 ENSMUSG00000087022 ENSMUST00000187858 9130024F11Rik processed_transcript Interval_29604 chr11 85317415 85317776 + 0 NA intron (ENSMUSG00000020525.17, intron 1 of 3) protein_coding-intron (ENSMUSG00000020525.17, intron 1 of 5) 5431 ENSMUSG00000020525.17 ENSMUSG00000020525 ENSMUST00000127717 Ppm1d protein_coding Interval_18 GL456211.1 99192 99435 + 0 NA NA NA NA NA Interval_90120 chr2 28277873 28278745 + 0 NA Intergenic Intergenic 45741 ENSMUSG00000087196.1 ENSMUSG00000087196 ENSMUST00000144634 Gm13373 lincRNA Interval_33483 chr11 116813280 116814894 + 0 NA intron (ENSMUSG00000020814.13, intron 2 of 4) protein_coding-intron (ENSMUSG00000020814.13, intron 2 of 3) 13916 ENSMUSG00000020814.13 ENSMUSG00000020814 ENSMUST00000150015 Mxra7 protein_coding Interval_12564 chr10 3191263 3192604 + 0 NA Intergenic Intergenic 15913 ENSMUSG00000111625.1 ENSMUSG00000111625 ENSMUST00000213719 Gm48097 processed_pseudogene Interval_94009 chr2 80669953 80671401 + 0 NA Intergenic Intergenic 31413 ENSMUSG00000026999.14 ENSMUSG00000026999 ENSMUST00000127926 Nup35 protein_coding Interval_104617 chr3 68847100 68847313 + 0 NA exon (ENSMUSG00000102853.1, exon 2 of 2) processed_pseudogene-exon (ENSMUSG00000102853.1, exon 2 of 2) 1127 ENSMUSG00000103218.1 ENSMUSG00000103218 ENSMUST00000195850 Gm7270 processed_pseudogene Interval_41990 chr13 6039716 6040374 + 0 NA Intergenic Intergenic -11041 ENSMUSG00000113054.1 ENSMUSG00000113054 ENSMUST00000222688 Gm47514 lincRNA Interval_144312 chr7 24431773 24433651 + 0 NA TTS (ENSMUSG00000062028.8) protein_coding-TTS (ENSMUSG00000062028.8) -15642 ENSMUSG00000108360.1 ENSMUSG00000108360 ENSMUST00000206737 Gm36159 lincRNA Interval_51282 chr14 25726131 25727688 + 0 NA intron (ENSMUSG00000055538.7, intron 2 of 3) protein_coding-intron (ENSMUSG00000055538.7, intron 2 of 3) -7117 ENSMUSG00000055538.7 ENSMUSG00000055538 ENSMUST00000184642 Zcchc24 protein_coding Interval_56045 chr14 105124556 105125002 + 0 NA exon (ENSMUSG00000022119.15, exon 19 of 22) protein_coding-exon (ENSMUSG00000022119.15, exon 19 of 22) 5558 ENSMUSG00000022119.15 ENSMUSG00000022119 ENSMUST00000163499 Rbm26 protein_coding Interval_118437 chr4 131544883 131545687 + 0 NA Intergenic Intergenic 58088 ENSMUSG00000078531.3 ENSMUSG00000078531 ENSMUST00000149942 Gm831 lincRNA Interval_88600 chr2 6523791 6524063 + 0 NA Intergenic Intergenic 44237 ENSMUSG00000102599.1 ENSMUSG00000102599 ENSMUST00000194293 Gm38386 TEC Interval_102950 chr3 33391639 33392712 + 0 NA TTS (ENSMUSG00000088260.1) snoRNA-TTS (ENSMUSG00000088260.1) 1024 ENSMUSG00000088260.1 ENSMUSG00000088260 ENSMUST00000157635 Gm24780 snoRNA Interval_53120 chr14 54572837 54574420 + 0 NA intron (ENSMUSG00000022178.11, intron 1 of 7) protein_coding-intron (ENSMUSG00000022178.11, intron 1 of 7) -1546 ENSMUSG00000022178.11 ENSMUSG00000022178 ENSMUST00000226463 Ajuba protein_coding Interval_142825 chr6 146229557 146231101 + 0 NA TTS (ENSMUSG00000030287.15) protein_coding-TTS (ENSMUSG00000030287.15) 2150 ENSMUSG00000030287.15 ENSMUSG00000030287 ENSMUST00000111673 Itpr2 protein_coding Interval_160654 chr8 111349120 111349417 + 0 NA exon (ENSMUSG00000033579.16, exon 5 of 7) protein_coding-exon (ENSMUSG00000033579.16, exon 5 of 7) -11475 ENSMUSG00000012519.14 ENSMUSG00000012519 ENSMUST00000145862 Mlkl protein_coding Interval_124385 chr5 45419308 45420224 + 0 NA intron (ENSMUSG00000029092.9, intron 1 of 5) lincRNA-intron (ENSMUSG00000029092.9, intron 1 of 5) -14623 ENSMUSG00000105255.1 ENSMUSG00000105255 ENSMUST00000196216 Gm42413 antisense Interval_6982 chr1 121536868 121537305 + 0 NA Intergenic Intergenic -8621 ENSMUSG00000050534.8 ENSMUSG00000050534 ENSMUST00000055884 Htr5b protein_coding Interval_138431 chr6 88147347 88147626 + 0 NA Intergenic Intergenic 43195 ENSMUSG00000108010.1 ENSMUSG00000108010 ENSMUST00000203855 Gm38708 lincRNA Interval_57204 chr15 7666713 7666908 + 0 NA Intergenic Intergenic 3530 ENSMUSG00000103142.1 ENSMUSG00000103142 ENSMUST00000194645 Gm37743 TEC Interval_85944 chr19 33761025 33762814 + 0 NA promoter-TSS (ENSMUSG00000024766.15) protein_coding-promoter-TSS (ENSMUSG00000024766.15) 25540 ENSMUSG00000079342.11 ENSMUSG00000079342 ENSMUST00000148137 Lipo1 protein_coding Interval_141633 chr6 131563598 131564144 + 0 NA Intergenic Intergenic 20109 ENSMUSG00000094113.7 ENSMUSG00000094113 ENSMUST00000161385 5430401F13Rik protein_coding Interval_155444 chr8 33629722 33630357 + 0 NA intron (ENSMUSG00000052906.7, intron 3 of 4) protein_coding-intron (ENSMUSG00000052906.7, intron 4 of 7) 6215 ENSMUSG00000052906.7 ENSMUSG00000052906 ENSMUST00000210807 Ubxn8 protein_coding Interval_75837 chr17 71717437 71718336 + 0 NA promoter-TSS (ENSMUSG00000089779.1) antisense-promoter-TSS (ENSMUSG00000089779.1) -69 ENSMUSG00000089779.1 ENSMUSG00000089779 ENSMUST00000161407 Gm15641 antisense Interval_128629 chr5 114393087 114394885 + 0 NA intron (ENSMUSG00000029577.13, intron 8 of 26) protein_coding-intron (ENSMUSG00000029577.13, intron 9 of 27) -4798 ENSMUSG00000029577.13 ENSMUSG00000029577 ENSMUST00000150630 Ube3b protein_coding Interval_53444 chr14 57546649 57547288 + 0 NA Intergenic Intergenic 22191 ENSMUSG00000050222.11 ENSMUSG00000050222 ENSMUST00000089494 Il17d protein_coding Interval_2776 chr1 44674651 44674873 + 0 NA intron (ENSMUSG00000056870.9, intron 2 of 3) protein_coding-intron (ENSMUSG00000056870.9, intron 1 of 10) -14382 ENSMUSG00000056870.9 ENSMUSG00000056870 ENSMUST00000162600 Gulp1 protein_coding Interval_36572 chr12 50638416 50638635 + 0 NA intron (ENSMUSG00000002688.8, intron 1 of 18) protein_coding-intron (ENSMUSG00000002688.8, intron 1 of 18) 10573 ENSMUSG00000002688.8 ENSMUSG00000002688 ENSMUST00000002765 Prkd1 protein_coding Interval_128095 chr5 110839337 110840733 + 0 NA promoter-TSS (ENSMUSG00000043510.12) protein_coding-promoter-TSS (ENSMUSG00000043510.12) -460 ENSMUSG00000043510.12 ENSMUSG00000043510 ENSMUST00000122921 Hscb protein_coding Interval_142153 chr6 137658637 137659081 + 0 NA Intergenic Intergenic -65284 ENSMUSG00000107878.1 ENSMUSG00000107878 ENSMUST00000203153 Gm44106 TEC Interval_24026 chr11 29609969 29610382 + 0 NA Intergenic Intergenic -7562 ENSMUSG00000085893.1 ENSMUSG00000085893 ENSMUST00000146791 Gm12091 processed_pseudogene Interval_9017 chr1 153101213 153101890 + 0 NA intron (ENSMUSG00000042751.14, intron 8 of 11) protein_coding-intron (ENSMUSG00000042751.14, intron 8 of 10) 8071 ENSMUSG00000042751.14 ENSMUSG00000042751 ENSMUST00000190960 Nmnat2 protein_coding Interval_63080 chr15 98997726 98998645 + 0 NA Intergenic Intergenic -7872 ENSMUSG00000064081.4 ENSMUSG00000064081 ENSMUST00000079818 Gm8973 processed_pseudogene Interval_14758 chr10 39628905 39629883 + 0 NA intron (ENSMUSG00000019842.6, intron 2 of 8) protein_coding-intron (ENSMUSG00000019842.6, intron 2 of 8) -15712 ENSMUSG00000086915.7 ENSMUSG00000086915 ENSMUST00000143877 Gm16364 antisense Interval_114640 chr4 83389746 83390703 + 0 NA intron (ENSMUSG00000086321.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000087592.1, intron 2 of 2) 444 ENSMUSG00000086321.1 ENSMUSG00000086321 ENSMUST00000155822 Gm11413 antisense Interval_84476 chr19 11611531 11612446 + 0 NA Intergenic Intergenic -4550 ENSMUSG00000088598.1 ENSMUSG00000088598 ENSMUST00000157973 Gm24599 snoRNA Interval_128592 chr5 114203311 114203508 + 0 NA exon (ENSMUSG00000042010.16, exon 16 of 52) protein_coding-exon (ENSMUSG00000042010.16, exon 16 of 52) 27503 ENSMUSG00000042010.16 ENSMUSG00000042010 ENSMUST00000142489 Acacb protein_coding Interval_111118 chr4 12232791 12233063 + 0 NA promoter-TSS (ENSMUSG00000060989.8) processed_pseudogene-promoter-TSS (ENSMUSG00000060989.8) 94 ENSMUSG00000060989.8 ENSMUSG00000060989 ENSMUST00000125165 Gm11847 processed_pseudogene Interval_48842 chr13 103967324 103967643 + 0 NA intron (ENSMUSG00000114276.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000114276.1, intron 1 of 1) 2641 ENSMUSG00000114276.1 ENSMUSG00000114276 ENSMUST00000225228 Gm47849 lincRNA Interval_3708 chr1 61497725 61499801 + 0 NA Intergenic Intergenic 23812 ENSMUSG00000100965.1 ENSMUSG00000100965 ENSMUST00000187655 Gm28449 lincRNA Interval_92997 chr2 69418231 69419304 + 0 NA Intergenic Intergenic 38322 ENSMUSG00000027068.6 ENSMUSG00000027068 ENSMUST00000063690 Dhrs9 protein_coding Interval_129821 chr5 122547225 122547658 + 0 NA Intergenic Intergenic 20663 ENSMUSG00000105815.1 ENSMUSG00000105815 ENSMUST00000197208 Gm43541 TEC Interval_147790 chr7 73570923 73572279 + 0 NA Intergenic Intergenic -13454 ENSMUSG00000101970.8 ENSMUSG00000101970 ENSMUST00000184655 1810026B05Rik processed_transcript Interval_59141 chr15 44678421 44678626 + 0 NA intron (ENSMUSG00000022340.15, intron 4 of 6) protein_coding-intron (ENSMUSG00000022340.15, intron 5 of 7) 59094 ENSMUSG00000022339.9 ENSMUSG00000022339 ENSMUST00000022964 Ebag9 protein_coding Interval_117467 chr4 123937757 123938099 + 0 NA TTS (ENSMUSG00000028646.16) protein_coding-TTS (ENSMUSG00000028646.16) 11694 ENSMUSG00000082515.1 ENSMUSG00000082515 ENSMUST00000118389 Gm12902 processed_pseudogene Interval_37851 chr12 72535696 72536958 + 0 NA promoter-TSS (ENSMUSG00000034501.7) protein_coding-promoter-TSS (ENSMUSG00000034501.7) -56 ENSMUSG00000034501.7 ENSMUSG00000034501 ENSMUST00000044352 Pcnx4 protein_coding Interval_134813 chr6 31776940 31777332 + 0 NA intron (ENSMUSG00000086804.8, intron 2 of 3) lincRNA-intron (ENSMUSG00000086804.8, intron 2 of 4) -9539 ENSMUSG00000087379.1 ENSMUSG00000087379 ENSMUST00000153328 Gm13849 lincRNA Interval_170483 chr9 108263181 108264826 + 0 NA promoter-TSS (ENSMUSG00000039952.15) protein_coding-promoter-TSS (ENSMUSG00000039952.15) -252 ENSMUSG00000039952.15 ENSMUSG00000039952 ENSMUST00000193701 Dag1 protein_coding Interval_99414 chr2 160771495 160771894 + 0 NA intron (ENSMUSG00000035877.17, intron 3 of 3) protein_coding-intron (ENSMUSG00000035877.17, intron 2 of 2) -19785 ENSMUSG00000098889.1 ENSMUSG00000098889 ENSMUST00000154038 Gm27206 antisense Interval_9628 chr1 160421265 160421504 + 0 NA intron (ENSMUSG00000026721.16, intron 1 of 6) protein_coding-intron (ENSMUSG00000026721.16, intron 17 of 20) 20520 ENSMUSG00000026721.16 ENSMUSG00000026721 ENSMUST00000193810 Rabgap1l protein_coding Interval_151125 chr7 118710798 118711136 + 0 NA Intergenic Intergenic -5219 ENSMUSG00000033917.15 ENSMUSG00000033917 ENSMUST00000207323 Gde1 protein_coding Interval_69931 chr17 3282750 3283444 + 0 NA exon (ENSMUSG00000116874.1, exon 1 of 4) lincRNA-exon (ENSMUSG00000116874.1, exon 1 of 4) 110 ENSMUSG00000116874.1 ENSMUSG00000116874 ENSMUST00000231652 Gm34035 lincRNA Interval_62942 chr15 98064541 98064789 + 0 NA promoter-TSS (ENSMUSG00000033075.17) protein_coding-promoter-TSS (ENSMUSG00000033075.17) -5087 ENSMUSG00000088325.1 ENSMUSG00000088325 ENSMUST00000157700 Gm25668 snoRNA Interval_54842 chr14 75767695 75768468 + 0 NA TTS (ENSMUSG00000022003.7) protein_coding-TTS (ENSMUSG00000022003.7) 18924 ENSMUSG00000022003.7 ENSMUSG00000022003 ENSMUST00000228379 Slc25a30 protein_coding Interval_136595 chr6 56361473 56362630 + 0 NA promoter-TSS (ENSMUSG00000004347.17) protein_coding-promoter-TSS (ENSMUSG00000004347.17) -189020 ENSMUSG00000106152.1 ENSMUSG00000106152 ENSMUST00000198921 Gm44413 miRNA Interval_34289 chr12 3101865 3102267 + 0 NA Intergenic Intergenic 19399 ENSMUSG00000092168.1 ENSMUSG00000092168 ENSMUST00000168738 Gm9075 unprocessed_pseudogene Interval_62112 chr15 86929666 86930086 + 0 NA Intergenic Intergenic -5794 ENSMUSG00000115957.1 ENSMUSG00000115957 ENSMUST00000229974 Gm49466 lincRNA Interval_13747 chr10 21782290 21783162 + 0 NA Intergenic Intergenic 38859 ENSMUSG00000099749.1 ENSMUSG00000099749 ENSMUST00000189792 Gm29323 lincRNA Interval_172229 chrX 11099705 11100137 + 0 NA Intergenic Intergenic -78914 ENSMUSG00000083419.1 ENSMUSG00000083419 ENSMUST00000119489 Gm14485 processed_pseudogene Interval_146948 chr7 56138839 56139074 + 0 NA exon (ENSMUSG00000030451.16, exon 35 of 93) protein_coding-exon (ENSMUSG00000030451.16, exon 35 of 93) 70972 ENSMUSG00000030451.16 ENSMUSG00000030451 ENSMUST00000205678 Herc2 protein_coding Interval_133174 chr5 150332408 150333467 + 0 NA intron (ENSMUSG00000056602.12, intron 3 of 60) protein_coding-intron (ENSMUSG00000056602.12, intron 3 of 60) -33496 ENSMUSG00000106719.1 ENSMUSG00000106719 ENSMUST00000201397 Gm42556 antisense Interval_76929 chr17 85010347 85010695 + 0 NA intron (ENSMUSG00000061130.13, intron 5 of 5) protein_coding-intron (ENSMUSG00000061130.13, intron 5 of 5) 16841 ENSMUSG00000061130.13 ENSMUSG00000061130 ENSMUST00000234851 Ppm1b protein_coding Interval_173746 chrX 103431408 103433453 + 0 NA intron (ENSMUSG00000085715.2, intron 1 of 3) antisense-intron (ENSMUSG00000085715.2, intron 1 of 3) 10420 ENSMUSG00000098078.1 ENSMUSG00000098078 ENSMUST00000182089 Gm26992 protein_coding Interval_56808 chr14 122219838 122220037 + 0 NA intron (ENSMUSG00000025545.10, intron 1 of 7) protein_coding-intron (ENSMUSG00000025545.10, intron 1 of 7) 13717 ENSMUSG00000100585.1 ENSMUSG00000100585 ENSMUST00000187423 1700108J01Rik antisense Interval_158929 chr8 88026585 88026926 + 0 NA Intergenic Intergenic 44055 ENSMUSG00000110719.1 ENSMUSG00000110719 ENSMUST00000212350 Gm2716 unitary_pseudogene Interval_138687 chr6 91173326 91174084 + 0 NA TTS (ENSMUSG00000034245.10) protein_coding-TTS (ENSMUSG00000034245.10) 313 ENSMUSG00000108158.1 ENSMUSG00000108158 ENSMUST00000205134 Gm44002 TEC Interval_47063 chr13 75061487 75061821 + 0 NA Intergenic Intergenic -49164 ENSMUSG00000021587.5 ENSMUSG00000021587 ENSMUST00000222727 Pcsk1 protein_coding Interval_94155 chr2 84736546 84736840 + 0 NA exon (ENSMUSG00000034059.14, exon 2 of 5) protein_coding-exon (ENSMUSG00000034059.14, exon 2 of 5) 2635 ENSMUSG00000034059.14 ENSMUSG00000034059 ENSMUST00000151647 Ypel4 protein_coding Interval_3135 chr1 53866296 53868559 + 0 NA promoter-TSS (ENSMUSG00000042807.15) protein_coding-promoter-TSS (ENSMUSG00000042807.15) -915 ENSMUSG00000042807.15 ENSMUSG00000042807 ENSMUST00000146850 Hecw2 protein_coding Interval_74263 chr17 47782508 47783146 + 0 NA promoter-TSS (ENSMUSG00000023990.18) protein_coding-promoter-TSS (ENSMUSG00000023990.18) -5083 ENSMUSG00000023990.18 ENSMUSG00000023990 ENSMUST00000140715 Tfeb protein_coding Interval_96433 chr2 122515039 122515574 + 0 NA intron (ENSMUSG00000079071.2, intron 6 of 17) protein_coding-intron (ENSMUSG00000079071.2, intron 6 of 17) 29389 ENSMUSG00000079071.2 ENSMUSG00000079071 ENSMUST00000132215 Slc28a2b protein_coding Interval_41214 chr12 111848501 111850046 + 0 NA intron (ENSMUSG00000021285.15, intron 4 of 16) protein_coding-intron (ENSMUSG00000021285.15, intron 4 of 16) 11863 ENSMUSG00000113357.1 ENSMUSG00000113357 ENSMUST00000222018 Gm19195 processed_pseudogene Interval_148585 chr7 82842044 82842984 + 0 NA Intergenic Intergenic -9085 ENSMUSG00000030636.15 ENSMUSG00000030636 ENSMUST00000032872 1700010L04Rik lincRNA Interval_42998 chr13 22771282 22772095 + 0 NA promoter-TSS (ENSMUSG00000087643.1) antisense-promoter-TSS (ENSMUSG00000087643.1) -968 ENSMUSG00000087643.1 ENSMUSG00000087643 ENSMUST00000148492 Gm11314 antisense Interval_64049 chr16 6479262 6479776 + 0 NA intron (ENSMUSG00000008658.16, intron 1 of 14) protein_coding-intron (ENSMUSG00000008658.16, intron 1 of 14) 503934 ENSMUSG00000101481.1 ENSMUSG00000101481 ENSMUST00000190515 1700123O21Rik sense_intronic Interval_163341 chr9 20964920 20965159 + 0 NA exon (ENSMUSG00000043895.6, exon 2 of 2) protein_coding-exon (ENSMUSG00000043895.6, exon 2 of 2) 8939 ENSMUSG00000043895.6 ENSMUSG00000043895 ENSMUST00000214333 S1pr2 protein_coding Interval_79717 chr18 34700964 34701396 + 0 NA intron (ENSMUSG00000024366.8, intron 3 of 7) protein_coding-intron (ENSMUSG00000024366.8, intron 3 of 7) 19207 ENSMUSG00000024366.8 ENSMUSG00000024366 ENSMUST00000025224 Gfra3 protein_coding Interval_114110 chr4 63494599 63496540 + 0 NA promoter-TSS (ENSMUSG00000039137.18) protein_coding-promoter-TSS (ENSMUSG00000039137.18) -49203 ENSMUSG00000039105.6 ENSMUSG00000039105 ENSMUST00000035301 Atp6v1g1 protein_coding Interval_115293 chr4 95445834 95446677 + 0 NA Intergenic Intergenic -37701 ENSMUSG00000085835.1 ENSMUSG00000085835 ENSMUST00000155789 Gm12707 processed_transcript Interval_135101 chr6 35355717 35356646 + 0 NA Intergenic Intergenic 25335 ENSMUSG00000107341.1 ENSMUSG00000107341 ENSMUST00000201560 1700065J11Rik lincRNA Interval_20828 chr10 121350409 121351684 + 0 NA TTS (ENSMUSG00000112014.1) antisense-TTS (ENSMUSG00000112014.1) 586 ENSMUSG00000112014.1 ENSMUSG00000112014 ENSMUST00000218746 Gm48435 antisense Interval_61855 chr15 84700316 84700671 + 0 NA intron (ENSMUSG00000036106.15, intron 7 of 8) protein_coding-intron (ENSMUSG00000036106.15, intron 6 of 7) -19559 ENSMUSG00000078954.9 ENSMUSG00000078954 ENSMUST00000169075 Arhgap8 protein_coding Interval_29736 chr11 86468713 86469029 + 0 NA Intergenic Intergenic -15859 ENSMUSG00000020521.7 ENSMUSG00000020521 ENSMUST00000131246 Rnft1 protein_coding Interval_28349 chr11 75318366 75320483 + 0 NA promoter-TSS (ENSMUSG00000106179.1) miRNA-promoter-TSS (ENSMUSG00000106179.1) -816 ENSMUSG00000106179.1 ENSMUSG00000106179 ENSMUST00000198372 Gm47300 miRNA Interval_20115 chr10 115005218 115005433 + 0 NA Intergenic Intergenic 13784 ENSMUSG00000096208.1 ENSMUSG00000096208 ENSMUST00000178475 Gm22070 snRNA Interval_80910 chr18 50082634 50084277 + 0 NA intron (ENSMUSG00000062210.13, intron 3 of 3) protein_coding-intron (ENSMUSG00000062210.13, intron 1 of 1) -29611 ENSMUSG00000086600.8 ENSMUSG00000086600 ENSMUST00000147073 C030005K06Rik processed_transcript Interval_77902 chr18 5186800 5187054 + 0 NA Intergenic Intergenic -21196 ENSMUSG00000097888.2 ENSMUSG00000097888 ENSMUST00000180850 Gm26682 lincRNA Interval_103723 chr3 52044785 52045009 + 0 NA intron (ENSMUSG00000061143.15, intron 1 of 4) protein_coding-intron (ENSMUSG00000061143.15, intron 1 of 4) 19347 ENSMUSG00000104339.1 ENSMUSG00000104339 ENSMUST00000194534 C130089K02Rik TEC Interval_6188 chr1 100566157 100566652 + 0 NA Intergenic Intergenic -30671 ENSMUSG00000099427.1 ENSMUSG00000099427 ENSMUST00000185791 Gm18700 processed_pseudogene Interval_169585 chr9 99299164 99299818 + 0 NA exon (ENSMUSG00000100281.1, exon 2 of 2) antisense-exon (ENSMUSG00000100281.1, exon 2 of 2) 5184 ENSMUSG00000100281.1 ENSMUSG00000100281 ENSMUST00000191492 4930422M22Rik antisense Interval_66319 chr16 33129869 33130645 + 0 NA Intergenic Intergenic 6029 ENSMUSG00000022802.2 ENSMUSG00000022802 ENSMUST00000155920 Lmln protein_coding Interval_73649 chr17 42393035 42393305 + 0 NA intron (ENSMUSG00000042256.5, intron 2 of 2) protein_coding-intron (ENSMUSG00000042256.5, intron 3 of 3) 77181 ENSMUSG00000042256.5 ENSMUSG00000042256 ENSMUST00000232968 Ptchd4 protein_coding Interval_158971 chr8 88317062 88317333 + 0 NA intron (ENSMUSG00000031659.13, intron 4 of 18) protein_coding-intron (ENSMUSG00000031659.13, intron 12 of 27) 16818 ENSMUSG00000031659.13 ENSMUSG00000031659 ENSMUST00000210688 Adcy7 protein_coding Interval_96725 chr2 127481842 127483409 + 0 NA promoter-TSS (ENSMUSG00000079056.12) protein_coding-promoter-TSS (ENSMUSG00000079056.12) -9317 ENSMUSG00000084628.1 ENSMUSG00000084628 ENSMUST00000122679 Gm22613 misc_RNA Interval_8604 chr1 143745460 143746421 + 0 NA promoter-TSS (ENSMUSG00000018196.18) protein_coding-promoter-TSS (ENSMUSG00000018196.18) 2525 ENSMUSG00000018196.18 ENSMUSG00000018196 ENSMUST00000152435 Glrx2 protein_coding Interval_99633 chr2 163735970 163736971 + 0 NA intron (ENSMUSG00000017697.3, intron 2 of 11) protein_coding-intron (ENSMUSG00000017697.3, intron 2 of 11) -5604 ENSMUSG00000017697.3 ENSMUSG00000017697 ENSMUST00000156939 Ada protein_coding Interval_149377 chr7 97830803 97831260 + 0 NA exon (ENSMUSG00000030774.13, exon 1 of 4) protein_coding-exon (ENSMUSG00000030774.13, exon 1 of 4) -62884 ENSMUSG00000030774.13 ENSMUSG00000030774 ENSMUST00000207017 Pak1 protein_coding Interval_161729 chr8 122392943 122393190 + 0 NA intron (ENSMUSG00000017478.15, intron 4 of 17) protein_coding-intron (ENSMUSG00000017478.15, intron 4 of 18) 16418 ENSMUSG00000017478.15 ENSMUSG00000017478 ENSMUST00000177049 Zc3h18 protein_coding Interval_30759 chr11 96311431 96312492 + 0 NA Intergenic Intergenic -5051 ENSMUSG00000085645.1 ENSMUSG00000085645 ENSMUST00000140952 Hoxb5os antisense Interval_135917 chr6 48665805 48666808 + 0 NA promoter-TSS (ENSMUSG00000108117.1) processed_pseudogene-promoter-TSS (ENSMUSG00000108117.1) -446 ENSMUSG00000108117.1 ENSMUSG00000108117 ENSMUST00000204969 Gm44262 processed_pseudogene Interval_119949 chr4 141077429 141079004 + 0 NA promoter-TSS (ENSMUSG00000028923.14) protein_coding-promoter-TSS (ENSMUSG00000028923.14) -4511 ENSMUSG00000028923.14 ENSMUSG00000028923 ENSMUST00000144813 Necap2 protein_coding Interval_17762 chr10 79944895 79945649 + 0 NA intron (ENSMUSG00000019564.12, intron 3 of 8) protein_coding-intron (ENSMUSG00000019564.12, intron 3 of 8) -1007 ENSMUSG00000019564.12 ENSMUSG00000019564 ENSMUST00000135005 Arid3a protein_coding Interval_99601 chr2 163472112 163473166 + 0 NA promoter-TSS (ENSMUSG00000053353.5) antisense-promoter-TSS (ENSMUSG00000053353.5) -10 ENSMUSG00000048486.6 ENSMUSG00000048486 ENSMUST00000109418 Fitm2 protein_coding Interval_120962 chr4 151957048 151957782 + 0 NA TTS (ENSMUSG00000039768.16) protein_coding-TTS (ENSMUSG00000039768.16) -21569 ENSMUSG00000039768.16 ENSMUSG00000039768 ENSMUST00000124955 Dnajc11 protein_coding Interval_36936 chr12 55465270 55465691 + 0 NA Intergenic Intergenic 26330 ENSMUSG00000021025.8 ENSMUSG00000021025 ENSMUST00000219869 Nfkbia protein_coding Interval_142188 chr6 137989369 137990287 + 0 NA intron (ENSMUSG00000044378.12, intron 7 of 8) protein_coding-intron (ENSMUSG00000044378.12, intron 6 of 7) -69857 ENSMUSG00000094466.1 ENSMUSG00000094466 ENSMUST00000177773 Gm24308 miRNA Interval_24592 chr11 34932856 34933180 + 0 NA Intergenic Intergenic 34001 ENSMUSG00000064577.1 ENSMUSG00000064577 ENSMUST00000082643 Gm25799 snRNA Interval_43084 chr13 23738511 23740093 + 0 NA exon (ENSMUSG00000036181.2, exon 1 of 1) protein_coding-exon (ENSMUSG00000036181.2, exon 1 of 1) 494 ENSMUSG00000036181.2 ENSMUSG00000036181 ENSMUST00000040914 H1f2 protein_coding Interval_116567 chr4 115751466 115751950 + 0 NA intron (ENSMUSG00000034210.14, intron 3 of 4) protein_coding-intron (ENSMUSG00000034210.14, intron 3 of 11) -14760 ENSMUSG00000034210.14 ENSMUSG00000034210 ENSMUST00000141927 Efcab14 protein_coding Interval_132866 chr5 148392817 148393075 + 0 NA promoter-TSS (ENSMUSG00000041313.14) protein_coding-promoter-TSS (ENSMUSG00000041313.14) 6845 ENSMUSG00000041313.14 ENSMUSG00000041313 ENSMUST00000201348 Slc7a1 protein_coding Interval_64452 chr16 11501297 11501925 + 0 NA intron (ENSMUSG00000071669.14, intron 13 of 20) protein_coding-intron (ENSMUSG00000071669.14, intron 6 of 13) -5305 ENSMUSG00000082653.1 ENSMUSG00000082653 ENSMUST00000117770 Gm15897 processed_pseudogene Interval_108916 chr3 133336368 133336968 + 0 NA intron (ENSMUSG00000028013.16, intron 5 of 8) protein_coding-intron (ENSMUSG00000028013.16, intron 5 of 11) 15200 ENSMUSG00000028013.16 ENSMUSG00000028013 ENSMUST00000196807 Ppa2 protein_coding Interval_161262 chr8 119376435 119376751 + 0 NA Intergenic Intergenic -2103 ENSMUSG00000110470.1 ENSMUSG00000110470 ENSMUST00000212135 Gm45723 lincRNA Interval_119555 chr4 138351641 138352097 + 0 NA intron (ENSMUSG00000028755.3, intron 1 of 3) protein_coding-intron (ENSMUSG00000028755.3, intron 1 of 3) -8220 ENSMUSG00000028755.3 ENSMUSG00000028755 ENSMUST00000030535 Cda protein_coding Interval_117568 chr4 124708554 124709830 + 0 NA TTS (ENSMUSG00000032643.12) protein_coding-TTS (ENSMUSG00000032643.12) -5691 ENSMUSG00000028902.4 ENSMUSG00000028902 ENSMUST00000151049 Sf3a3 protein_coding Interval_150420 chr7 110289649 110290317 + 0 NA Intergenic Intergenic -8456 ENSMUSG00000109799.1 ENSMUSG00000109799 ENSMUST00000210796 Gm45515 antisense Interval_35941 chr12 32237313 32237590 + 0 NA Intergenic Intergenic -8879 ENSMUSG00000112578.1 ENSMUSG00000112578 ENSMUST00000218566 Gm33308 lincRNA Interval_165457 chr9 48303166 48304477 + 0 NA intron (ENSMUSG00000044229.9, intron 2 of 8) protein_coding-intron (ENSMUSG00000044229.9, intron 1 of 10) 37033 ENSMUSG00000032028.15 ENSMUSG00000032028 ENSMUST00000142667 Nxpe2 protein_coding Interval_69205 chr16 91334215 91335229 + 0 NA Intergenic Intergenic -5725 ENSMUSG00000085865.2 ENSMUSG00000085865 ENSMUST00000146994 Gm15966 lincRNA Interval_132932 chr5 148808285 148809431 + 0 NA Intergenic Intergenic -11909 ENSMUSG00000087647.2 ENSMUSG00000087647 ENSMUST00000136919 Gm15407 lincRNA Interval_96483 chr2 124888060 124888772 + 0 NA Intergenic Intergenic 179761 ENSMUSG00000087450.1 ENSMUSG00000087450 ENSMUST00000137397 Gm13994 lincRNA Interval_110867 chr4 9156370 9156649 + 0 NA Intergenic Intergenic -53494 ENSMUSG00000075958.1 ENSMUSG00000075958 ENSMUST00000082782 Gm23423 snRNA Interval_134990 chr6 34364380 34365015 + 0 NA intron (ENSMUSG00000029762.6, intron 6 of 6) protein_coding-intron (ENSMUSG00000029762.6, intron 7 of 9) 8582 ENSMUSG00000029762.6 ENSMUSG00000029762 ENSMUST00000133370 Akr1b8 protein_coding Interval_76325 chr17 79071916 79072591 + 0 NA intron (ENSMUSG00000024084.8, intron 2 of 5) protein_coding-intron (ENSMUSG00000024084.8, intron 3 of 6) 20065 ENSMUSG00000024084.8 ENSMUSG00000024084 ENSMUST00000233899 Qpct protein_coding Interval_14547 chr10 35264895 35265591 + 0 NA Intergenic Intergenic -22500 ENSMUSG00000110837.1 ENSMUSG00000110837 ENSMUST00000217230 Gm18729 processed_pseudogene Interval_87808 chr19 56064945 56065146 + 0 NA Intergenic Intergenic 29949 ENSMUSG00000117827.1 ENSMUSG00000117827 ENSMUST00000236136 D730002M21Rik lincRNA Interval_4175 chr1 71244790 71246005 + 0 NA intron (ENSMUSG00000050296.14, intron 51 of 52) protein_coding-intron (ENSMUSG00000050296.14, intron 51 of 52) -89377 ENSMUSG00000101551.1 ENSMUSG00000101551 ENSMUST00000188170 Gm8870 processed_pseudogene Interval_17831 chr10 80306264 80306459 + 0 NA exon (ENSMUSG00000020135.13, exon 8 of 14) protein_coding-exon (ENSMUSG00000020135.13, exon 8 of 14) 7270 ENSMUSG00000020135.13 ENSMUSG00000020135 ENSMUST00000020349 Apc2 protein_coding Interval_157950 chr8 77170133 77170469 + 0 NA intron (ENSMUSG00000031618.13, intron 4 of 6) protein_coding-intron (ENSMUSG00000031618.13, intron 3 of 7) -23821 ENSMUSG00000089309.1 ENSMUSG00000089309 ENSMUST00000158684 Gm24838 snoRNA Interval_110898 chr4 9770046 9771668 + 0 NA promoter-TSS (ENSMUSG00000085558.7) processed_transcript-promoter-TSS (ENSMUSG00000085558.7) 60 ENSMUSG00000085558.7 ENSMUSG00000085558 ENSMUST00000154082 4930412C18Rik processed_transcript Interval_164283 chr9 34993390 34994251 + 0 NA intron (ENSMUSG00000032036.15, intron 5 of 13) protein_coding-intron (ENSMUSG00000032036.15, intron 6 of 16) 33801 ENSMUSG00000089465.1 ENSMUSG00000089465 ENSMUST00000158840 Gm23702 rRNA Interval_106492 chr3 96675408 96676199 + 0 NA intron (ENSMUSG00000038354.13, intron 1 of 13) protein_coding-intron (ENSMUSG00000038354.13, intron 1 of 12) -4290 ENSMUSG00000038354.13 ENSMUSG00000038354 ENSMUST00000130429 Ankrd35 protein_coding Interval_40059 chr12 100926283 100926980 + 0 NA intron (ENSMUSG00000021182.16, intron 1 of 2) protein_coding-intron (ENSMUSG00000021182.16, intron 25 of 29) 2434 ENSMUSG00000021182.16 ENSMUSG00000021182 ENSMUST00000223097 Ccdc88c protein_coding Interval_123281 chr5 31094715 31095745 + 0 NA promoter-TSS (ENSMUSG00000029151.14) protein_coding-promoter-TSS (ENSMUSG00000029151.14) 246 ENSMUSG00000104299.1 ENSMUSG00000104299 ENSMUST00000191780 Gm9924 TEC Interval_147344 chr7 66005066 66005543 + 0 NA intron (ENSMUSG00000030513.14, intron 11 of 19) protein_coding-intron (ENSMUSG00000030513.14, intron 13 of 21) -38298 ENSMUSG00000108793.1 ENSMUSG00000108793 ENSMUST00000206065 Gm45213 protein_coding Interval_173724 chrX 103025686 103026778 + 0 NA Intergenic Intergenic -11392 ENSMUSG00000080774.1 ENSMUSG00000080774 ENSMUST00000120745 Gm9143 processed_pseudogene Interval_10071 chr1 165609432 165610151 + 0 NA promoter-TSS (ENSMUSG00000026566.15) protein_coding-promoter-TSS (ENSMUSG00000026566.15) -1262 ENSMUSG00000026566.15 ENSMUSG00000026566 ENSMUST00000193172 Mpzl1 protein_coding Interval_53215 chr14 55177245 55178038 + 0 NA Intergenic Intergenic 7932 ENSMUSG00000115077.1 ENSMUSG00000115077 ENSMUST00000228176 Gm46455 unprocessed_pseudogene Interval_44259 chr13 43151650 43152751 + 0 NA TTS (ENSMUSG00000021368.15) protein_coding-TTS (ENSMUSG00000021368.15) 7352 ENSMUSG00000021368.15 ENSMUSG00000021368 ENSMUST00000221095 Tbc1d7 protein_coding Interval_164375 chr9 36503634 36504514 + 0 NA Intergenic Intergenic 21778 ENSMUSG00000098949.1 ENSMUSG00000098949 ENSMUST00000184837 Gm27160 processed_pseudogene Interval_169214 chr9 95568780 95570050 + 0 NA Intergenic Intergenic 9758 ENSMUSG00000064225.6 ENSMUSG00000064225 ENSMUST00000079597 Paqr9 protein_coding Interval_50284 chr14 11643660 11643894 + 0 NA intron (ENSMUSG00000021745.14, intron 1 of 3) protein_coding-intron (ENSMUSG00000021745.14, intron 1 of 29) -123007 ENSMUSG00000114849.1 ENSMUSG00000114849 ENSMUST00000224543 Gm48595 lincRNA Interval_72510 chr17 30312821 30313123 + 0 NA intron (ENSMUSG00000062202.14, intron 3 of 7) protein_coding-intron (ENSMUSG00000062202.14, intron 7 of 11) 1893 ENSMUSG00000089222.1 ENSMUSG00000089222 ENSMUST00000158597 Gm25049 snRNA Interval_9781 chr1 162162489 162162953 + 0 NA intron (ENSMUSG00000040265.16, intron 3 of 8) protein_coding-intron (ENSMUSG00000040265.16, intron 14 of 19) -55093 ENSMUSG00000070126.1 ENSMUSG00000070126 ENSMUST00000093618 Mir199a-2 miRNA Interval_110127 chr3 153553329 153553626 + 0 NA intron (ENSMUSG00000052544.9, intron 1 of 4) protein_coding-intron (ENSMUSG00000052544.9, intron 1 of 2) -43735 ENSMUSG00000052544.9 ENSMUSG00000052544 ENSMUST00000198775 St6galnac3 protein_coding Interval_51295 chr14 25809553 25810120 + 0 NA promoter-TSS (ENSMUSG00000099057.1) processed_pseudogene-promoter-TSS (ENSMUSG00000099057.1) 45 ENSMUSG00000099057.1 ENSMUSG00000099057 ENSMUST00000184296 Gm27185 processed_pseudogene Interval_155056 chr8 25993389 25994466 + 0 NA intron (ENSMUSG00000037251.5, intron 1 of 4) protein_coding-intron (ENSMUSG00000037251.5, intron 1 of 4) 206 ENSMUSG00000037251.5 ENSMUSG00000037251 ENSMUST00000061850 Pomk protein_coding Interval_137063 chr6 67088626 67089338 + 0 NA Intergenic Intergenic 12222 ENSMUSG00000087231.7 ENSMUSG00000087231 ENSMUST00000204847 E230016M11Rik processed_transcript Interval_101762 chr3 9456076 9456873 + 0 NA intron (ENSMUSG00000040209.12, intron 3 of 9) protein_coding-intron (ENSMUSG00000040209.12, intron 4 of 8) -39694 ENSMUSG00000103485.1 ENSMUSG00000103485 ENSMUST00000192900 Gm38001 TEC Interval_23640 chr11 24018978 24020003 + 0 NA Intergenic Intergenic 4835 ENSMUSG00000104783.1 ENSMUSG00000104783 ENSMUST00000199670 Gm44381 miRNA Interval_162497 chr9 3348982 3350678 + 0 NA intron (ENSMUSG00000025899.14, intron 6 of 7) protein_coding-intron (ENSMUSG00000025899.14, intron 7 of 11) -2827 ENSMUSG00000064956.1 ENSMUSG00000064956 ENSMUST00000083022 Gm24918 snoRNA Interval_105957 chr3 90302691 90302928 + 0 NA intron (ENSMUSG00000042390.9, intron 1 of 10) protein_coding-intron (ENSMUSG00000042390.9, intron 1 of 9) -8709 ENSMUSG00000108394.1 ENSMUSG00000108394 ENSMUST00000200213 Gm45477 TEC Interval_30935 chr11 97286322 97287531 + 0 NA Intergenic Intergenic -6356 ENSMUSG00000001441.13 ENSMUSG00000001441 ENSMUST00000152546 Npepps protein_coding Interval_119768 chr4 139831409 139834408 + 0 NA promoter-TSS (ENSMUSG00000028736.13) protein_coding-promoter-TSS (ENSMUSG00000028736.13) 99 ENSMUSG00000028736.13 ENSMUSG00000028736 ENSMUST00000174681 Pax7 protein_coding Interval_19624 chr10 105945842 105946065 + 0 NA Intergenic Intergenic -16210 ENSMUSG00000088415.1 ENSMUSG00000088415 ENSMUST00000157790 Gm24237 snoRNA Interval_53951 chr14 63712831 63713554 + 0 NA intron (ENSMUSG00000035067.9, intron 1 of 2) protein_coding-intron (ENSMUSG00000035067.9, intron 1 of 2) -13997 ENSMUSG00000076049.4 ENSMUSG00000076049 ENSMUST00000102094 Mir598 miRNA Interval_56905 chr14 123066350 123067598 + 0 NA intron (ENSMUSG00000115016.1, intron 1 of 3) processed_transcript-intron (ENSMUSG00000115016.1, intron 1 of 3) 23692 ENSMUSG00000115016.1 ENSMUSG00000115016 ENSMUST00000226524 AA536875 processed_transcript Interval_128022 chr5 110334005 110334480 + 0 NA exon (ENSMUSG00000007080.14, exon 44 of 49) protein_coding-exon (ENSMUSG00000007080.14, exon 44 of 49) -1039 ENSMUSG00000085606.1 ENSMUSG00000085606 ENSMUST00000137099 Gm15792 antisense Interval_80724 chr18 46597068 46598820 + 0 NA promoter-TSS (ENSMUSG00000033184.14) protein_coding-promoter-TSS (ENSMUSG00000033184.14) 243 ENSMUSG00000057561.10 ENSMUSG00000057561 ENSMUST00000236497 Eif1a protein_coding Interval_58162 chr15 30095183 30095802 + 0 NA Intergenic Intergenic -42936 ENSMUSG00000065726.1 ENSMUSG00000065726 ENSMUST00000083792 Gm26163 snoRNA Interval_24740 chr11 36494590 36494839 + 0 NA intron (ENSMUSG00000049336.16, intron 2 of 28) protein_coding-intron (ENSMUSG00000049336.16, intron 2 of 28) 216673 ENSMUSG00000086375.1 ENSMUSG00000086375 ENSMUST00000123278 Gm12127 antisense Interval_137035 chr6 66840806 66841318 + 0 NA Intergenic Intergenic -32091 ENSMUSG00000093755.2 ENSMUSG00000093755 ENSMUST00000226783 Vmn1r39 protein_coding Interval_41606 chr12 116881400 116881669 + 0 NA intron (ENSMUSG00000056553.14, intron 9 of 22) protein_coding-intron (ENSMUSG00000056553.14, intron 9 of 22) -28432 ENSMUSG00000113795.1 ENSMUSG00000113795 ENSMUST00000220994 Gm48119 processed_pseudogene Interval_80170 chr18 38001102 38001384 + 0 NA Intergenic Intergenic -2510 ENSMUSG00000024451.9 ENSMUSG00000024451 ENSMUST00000236134 Arap3 protein_coding Interval_43891 chr13 37879229 37879989 + 0 NA intron (ENSMUSG00000039087.17, intron 1 of 3) protein_coding-intron (ENSMUSG00000039087.17, intron 1 of 9) -67407 ENSMUSG00000039087.17 ENSMUSG00000039087 ENSMUST00000162849 Rreb1 protein_coding Interval_136320 chr6 52987469 52987653 + 0 NA intron (ENSMUSG00000063568.11, intron 1 of 4) protein_coding-intron (ENSMUSG00000063568.11, intron 1 of 4) 22971 ENSMUSG00000089209.1 ENSMUSG00000089209 ENSMUST00000158584 Gm26215 scaRNA Interval_97626 chr2 140986669 140987354 + 0 NA intron (ENSMUSG00000068205.14, intron 4 of 16) protein_coding-intron (ENSMUSG00000068205.14, intron 4 of 17) -30762 ENSMUSG00000081731.1 ENSMUSG00000081731 ENSMUST00000121776 Calr-ps processed_pseudogene Interval_93761 chr2 76674761 76676779 + 0 NA intron (ENSMUSG00000002733.8, intron 1 of 7) protein_coding-intron (ENSMUSG00000002733.8, intron 1 of 7) -2654 ENSMUSG00000002732.14 ENSMUSG00000002732 ENSMUST00000147355 Fkbp7 protein_coding Interval_18151 chr10 83046411 83046750 + 0 NA intron (ENSMUSG00000034612.7, intron 1 of 2) protein_coding-intron (ENSMUSG00000034612.7, intron 1 of 2) -14885 ENSMUSG00000112084.1 ENSMUSG00000112084 ENSMUST00000218071 Gm10773 TEC Interval_56102 chr14 105747628 105749472 + 0 NA Intergenic Intergenic 66721 ENSMUSG00000060143.7 ENSMUSG00000060143 ENSMUST00000227553 Gm10076 lincRNA Interval_130526 chr5 128570875 128571099 + 0 NA Intergenic Intergenic 26969 ENSMUSG00000105059.1 ENSMUSG00000105059 ENSMUST00000199981 Gm42498 TEC Interval_111876 chr4 32185991 32187337 + 0 NA Intergenic Intergenic -20484 ENSMUSG00000083564.1 ENSMUSG00000083564 ENSMUST00000118175 Gm11929 processed_pseudogene Interval_1818 chr1 33989527 33990345 + 0 NA intron (ENSMUSG00000026131.20, intron 3 of 102) protein_coding-intron (ENSMUSG00000026131.20, intron 3 of 102) -8434 ENSMUSG00000084506.1 ENSMUSG00000084506 ENSMUST00000122557 Gm23792 snRNA Interval_82073 chr18 67554274 67554710 + 0 NA intron (ENSMUSG00000024533.17, intron 2 of 16) protein_coding-intron (ENSMUSG00000024533.17, intron 2 of 16) -7902 ENSMUSG00000091695.2 ENSMUSG00000091695 ENSMUST00000163749 Gm17669 processed_pseudogene Interval_48628 chr13 100730142 100731568 + 0 NA promoter-TSS (ENSMUSG00000069089.8) protein_coding-promoter-TSS (ENSMUSG00000069089.8) 45 ENSMUSG00000069089.8 ENSMUSG00000069089 ENSMUST00000225578 Cdk7 protein_coding Interval_130838 chr5 131115636 131115921 + 0 NA intron (ENSMUSG00000034040.16, intron 2 of 3) protein_coding-intron (ENSMUSG00000034040.16, intron 2 of 10) 18933 ENSMUSG00000106710.1 ENSMUSG00000106710 ENSMUST00000202871 Gm43166 sense_intronic Interval_74078 chr17 46454314 46456267 + 0 NA exon (ENSMUSG00000015599.9, exon 13 of 13) protein_coding-exon (ENSMUSG00000015599.9, exon 13 of 13) -15193 ENSMUSG00000091742.2 ENSMUSG00000091742 ENSMUST00000166852 Gm5093 processed_pseudogene Interval_83287 chr18 83536837 83537416 + 0 NA Intergenic Intergenic -11822 ENSMUSG00000118175.1 ENSMUSG00000118175 ENSMUST00000237450 Gm50416 lincRNA Interval_47511 chr13 86035737 86036494 + 0 NA Intergenic Intergenic 8933 ENSMUSG00000064917.1 ENSMUSG00000064917 ENSMUST00000082983 Gm22574 TEC Interval_52024 chr14 34680553 34681554 + 0 NA intron (ENSMUSG00000041408.18, intron 2 of 19) protein_coding-intron (ENSMUSG00000041408.18, intron 2 of 18) -7290 ENSMUSG00000115007.1 ENSMUSG00000115007 ENSMUST00000228874 5830448L01Rik bidirectional_promoter_lncRNA Interval_84584 chr19 13738919 13739136 + 0 NA promoter-TSS (ENSMUSG00000050865.5) protein_coding-promoter-TSS (ENSMUSG00000050865.5) -1013 ENSMUSG00000050865.5 ENSMUSG00000050865 ENSMUST00000051768 Olfr1494 protein_coding Interval_132743 chr5 147531780 147532256 + 0 NA TTS (ENSMUSG00000029647.15) protein_coding-TTS (ENSMUSG00000029647.15) 92628 ENSMUSG00000107085.1 ENSMUSG00000107085 ENSMUST00000202594 Gm42883 processed_pseudogene Interval_17893 chr10 80637714 80640612 + 0 NA promoter-TSS (ENSMUSG00000003345.16) protein_coding-promoter-TSS (ENSMUSG00000003345.16) -476 ENSMUSG00000003345.16 ENSMUSG00000003345 ENSMUST00000220431 Csnk1g2 protein_coding Interval_135633 chr6 41984292 41985079 + 0 NA Intergenic Intergenic 16545 ENSMUSG00000062833.2 ENSMUSG00000062833 ENSMUST00000080742 Sval3 protein_coding Interval_22749 chr11 14482675 14483060 + 0 NA Intergenic Intergenic -4746 ENSMUSG00000080734.1 ENSMUSG00000080734 ENSMUST00000120786 Gm12006 processed_pseudogene Interval_430 chr1 5176050 5176265 + 0 NA Intergenic Intergenic 93025 ENSMUSG00000033793.12 ENSMUSG00000033793 ENSMUST00000192142 Atp6v1h protein_coding Interval_76698 chr17 83563624 83564677 + 0 NA Intergenic Intergenic -59644 ENSMUSG00000024248.14 ENSMUSG00000024248 ENSMUST00000234258 Cox7a2l protein_coding Interval_33220 chr11 115306375 115307634 + 0 NA promoter-TSS (ENSMUSG00000050201.9) protein_coding-promoter-TSS (ENSMUSG00000050201.9) -9341 ENSMUSG00000044788.10 ENSMUSG00000044788 ENSMUST00000141006 Fads6 protein_coding Interval_111537 chr4 22667569 22668273 + 0 NA Intergenic Intergenic -36136 ENSMUSG00000080762.1 ENSMUSG00000080762 ENSMUST00000121885 Gm11879 processed_pseudogene Interval_92583 chr2 60863548 60864474 + 0 NA intron (ENSMUSG00000026970.16, intron 1 of 13) protein_coding-intron (ENSMUSG00000026970.16, intron 1 of 13) 17427 ENSMUSG00000026970.16 ENSMUSG00000026970 ENSMUST00000128866 Rbms1 protein_coding Interval_39110 chr12 85142613 85143084 + 0 NA intron (ENSMUSG00000019235.9, intron 4 of 10) protein_coding-intron (ENSMUSG00000019235.9, intron 4 of 8) 8402 ENSMUSG00000019235.9 ENSMUSG00000019235 ENSMUST00000223399 Rps6kl1 protein_coding Interval_58657 chr15 36858939 36859536 + 0 NA Intergenic Intergenic 16421 ENSMUSG00000115750.1 ENSMUSG00000115750 ENSMUST00000226620 Gm49282 lincRNA Interval_43305 chr13 28917547 28917973 + 0 NA Intergenic Intergenic -19815 ENSMUSG00000113352.1 ENSMUSG00000113352 ENSMUST00000223473 Gm34639 lincRNA Interval_43484 chr13 31779502 31780145 + 0 NA Intergenic Intergenic -17716 ENSMUSG00000086144.2 ENSMUSG00000086144 ENSMUST00000154678 Gm11379 antisense Interval_79396 chr18 31633861 31635367 + 0 NA promoter-TSS (ENSMUSG00000024260.14) protein_coding-promoter-TSS (ENSMUSG00000024260.14) 243 ENSMUSG00000024260.14 ENSMUSG00000024260 ENSMUST00000234772 Sap130 protein_coding Interval_152989 chr7 140574309 140574572 + 0 NA exon (ENSMUSG00000095901.2, exon 1 of 1) protein_coding-exon (ENSMUSG00000095901.2, exon 1 of 1) 6554 ENSMUSG00000095901.2 ENSMUSG00000095901 ENSMUST00000084457 Olfr538 protein_coding Interval_111606 chr4 24483604 24485573 + 0 NA Intergenic Intergenic -11863 ENSMUSG00000045751.16 ENSMUSG00000045751 ENSMUST00000123984 Mms22l protein_coding Interval_27678 chr11 69426846 69429375 + 0 NA intron (ENSMUSG00000005237.14, intron 77 of 85) protein_coding-intron (ENSMUSG00000005237.14, intron 76 of 84) -20438 ENSMUSG00000086591.1 ENSMUSG00000086591 ENSMUST00000124108 Dnah2os antisense Interval_76906 chr17 84873488 84873723 + 0 NA Intergenic Intergenic 21067 ENSMUSG00000117631.1 ENSMUSG00000117631 ENSMUST00000234899 Gm9400 unprocessed_pseudogene Interval_3661 chr1 60483155 60483408 + 0 NA TTS (ENSMUSG00000026014.15) protein_coding-TTS (ENSMUSG00000026014.15) 19984 ENSMUSG00000026014.15 ENSMUSG00000026014 ENSMUST00000142258 Raph1 protein_coding Interval_41105 chr12 111198555 111198869 + 0 NA intron (ENSMUSG00000021277.16, intron 2 of 4) protein_coding-intron (ENSMUSG00000021277.16, intron 1 of 11) -14221 ENSMUSG00000083193.1 ENSMUSG00000083193 ENSMUST00000121608 4930595D18Rik protein_coding Interval_154636 chr8 22184976 22186296 + 0 NA intron (ENSMUSG00000037725.8, intron 1 of 8) protein_coding-intron (ENSMUSG00000037725.8, intron 1 of 8) -15467 ENSMUSG00000037725.8 ENSMUSG00000037725 ENSMUST00000211045 Ckap2 protein_coding Interval_77271 chr17 87695565 87697823 + 0 NA TTS (ENSMUSG00000024151.13) protein_coding-TTS (ENSMUSG00000024151.13) 153 ENSMUSG00000024151.13 ENSMUSG00000024151 ENSMUST00000174703 Msh2 protein_coding Interval_57483 chr15 11686942 11687934 + 0 NA Intergenic Intergenic 16265 ENSMUSG00000115585.1 ENSMUSG00000115585 ENSMUST00000228108 Gm41271 processed_transcript Interval_98508 chr2 152862061 152863495 + 0 NA intron (ENSMUSG00000027469.16, intron 2 of 17) protein_coding-intron (ENSMUSG00000027469.16, intron 2 of 17) -2289 ENSMUSG00000093746.1 ENSMUSG00000093746 ENSMUST00000175928 Mir5622 miRNA Interval_40051 chr12 100868842 100869132 + 0 NA intron (ENSMUSG00000021185.16, intron 12 of 13) protein_coding-intron (ENSMUSG00000021185.16, intron 12 of 12) -4548 ENSMUSG00000082604.3 ENSMUSG00000082604 ENSMUST00000117972 Gm8482 processed_pseudogene Interval_26308 chr11 55990718 55991950 + 0 NA intron (ENSMUSG00000086020.1, intron 1 of 4) antisense-intron (ENSMUSG00000086020.1, intron 1 of 4) 49676 ENSMUSG00000037393.2 ENSMUSG00000037393 ENSMUST00000037682 Nmur2 protein_coding Interval_22069 chr11 6139909 6140124 + 0 NA intron (ENSMUSG00000053838.14, intron 2 of 2) protein_coding-intron (ENSMUSG00000053838.14, intron 3 of 5) 33020 ENSMUSG00000083022.1 ENSMUSG00000083022 ENSMUST00000117476 Rps15a-ps6 processed_pseudogene Interval_67202 chr16 44381768 44382299 + 0 NA exon (ENSMUSG00000043065.12, exon 15 of 18) protein_coding-exon (ENSMUSG00000043065.12, exon 15 of 18) -12763 ENSMUSG00000071550.14 ENSMUSG00000071550 ENSMUST00000127303 Cfap44 protein_coding Interval_131863 chr5 140458728 140459231 + 0 NA intron (ENSMUSG00000106350.2, intron 3 of 19) protein_coding-intron (ENSMUSG00000106350.2, intron 3 of 19) -5088 ENSMUSG00000105056.1 ENSMUSG00000105056 ENSMUST00000196158 Gm42805 processed_pseudogene Interval_1862 chr1 34189755 34190905 + 0 NA exon (ENSMUSG00000026131.20, exon 36 of 98) protein_coding-exon (ENSMUSG00000026131.20, exon 36 of 98) -11884 ENSMUSG00000096992.3 ENSMUSG00000096992 ENSMUST00000187268 Gm26788 processed_transcript Interval_150144 chr7 107358348 107358674 + 0 NA Intergenic Intergenic -7561 ENSMUSG00000109078.1 ENSMUSG00000109078 ENSMUST00000208516 Gm19033 processed_pseudogene Interval_4807 chr1 79453741 79454837 + 0 NA Intergenic Intergenic -14247 ENSMUSG00000050711.7 ENSMUSG00000050711 ENSMUST00000049972 Scg2 protein_coding Interval_150852 chr7 115732860 115733216 + 0 NA intron (ENSMUSG00000051910.13, intron 4 of 11) protein_coding-intron (ENSMUSG00000051910.13, intron 4 of 16) 113113 ENSMUSG00000051910.13 ENSMUSG00000051910 ENSMUST00000206912 Sox6 protein_coding Interval_39703 chr12 93733088 93733266 + 0 NA Intergenic Intergenic -13325 ENSMUSG00000065303.1 ENSMUSG00000065303 ENSMUST00000083369 Gm23249 snRNA Interval_62743 chr15 96582789 96583272 + 0 NA exon (ENSMUSG00000023169.15, exon 12 of 12) protein_coding-exon (ENSMUSG00000023169.15, exon 12 of 12) 59183 ENSMUSG00000023169.15 ENSMUSG00000023169 ENSMUST00000229253 Slc38a1 protein_coding Interval_77315 chr17 87987724 87988235 + 0 NA intron (ENSMUSG00000005370.4, intron 4 of 9) protein_coding-intron (ENSMUSG00000005370.4, intron 4 of 9) 12884 ENSMUSG00000005370.4 ENSMUSG00000005370 ENSMUST00000234756 Msh6 protein_coding Interval_23645 chr11 24057821 24058625 + 0 NA intron (ENSMUSG00000055010.1, intron 2 of 2) protein_coding-intron (ENSMUSG00000055010.1, intron 2 of 2) 16831 ENSMUSG00000055010.1 ENSMUSG00000055010 ENSMUST00000068360 A830031A19Rik protein_coding Interval_115529 chr4 100202440 100202709 + 0 NA intron (ENSMUSG00000035305.5, intron 1 of 8) protein_coding-intron (ENSMUSG00000035305.5, intron 1 of 8) 82953 ENSMUSG00000086385.1 ENSMUSG00000086385 ENSMUST00000134206 Gm12701 sense_intronic Interval_117145 chr4 120003249 120003491 + 0 NA intron (ENSMUSG00000028634.17, intron 2 of 8) protein_coding-intron (ENSMUSG00000028634.17, intron 2 of 8) -29396 ENSMUSG00000028634.17 ENSMUSG00000028634 ENSMUST00000166542 Hivep3 protein_coding Interval_139985 chr6 113216188 113216944 + 0 NA Intergenic Intergenic -22623 ENSMUSG00000042873.11 ENSMUSG00000042873 ENSMUST00000203665 Lhfpl4 protein_coding Interval_41135 chr12 111423275 111424443 + 0 NA TTS (ENSMUSG00000021280.9) protein_coding-TTS (ENSMUSG00000021280.9) 6400 ENSMUSG00000021280.9 ENSMUSG00000021280 ENSMUST00000223369 Exoc3l4 protein_coding Interval_21208 chr10 127225101 127226150 + 0 NA TTS (ENSMUSG00000074657.5) protein_coding-TTS (ENSMUSG00000074657.5) -14040 ENSMUSG00000025417.8 ENSMUSG00000025417 ENSMUST00000218386 Pip4k2c protein_coding Interval_133834 chr6 13061236 13061917 + 0 NA Intergenic Intergenic -4979 ENSMUSG00000098052.1 ENSMUSG00000098052 ENSMUST00000182201 Gm5300 processed_pseudogene Interval_82451 chr18 74161379 74161849 + 0 NA Intergenic Intergenic 46133 ENSMUSG00000036223.16 ENSMUSG00000036223 ENSMUST00000237276 Ska1 protein_coding Interval_91219 chr2 36021480 36022370 + 0 NA Intergenic Intergenic 27481 ENSMUSG00000026895.7 ENSMUSG00000026895 ENSMUST00000070112 Ndufa8 protein_coding Interval_64512 chr16 12936683 12937284 + 0 NA intron (ENSMUSG00000116520.1, intron 1 of 11) lincRNA-intron (ENSMUSG00000116520.1, intron 1 of 11) 8952 ENSMUSG00000116520.1 ENSMUSG00000116520 ENSMUST00000230696 4930414F18Rik lincRNA Interval_819 chr1 11782608 11783968 + 0 NA intron (ENSMUSG00000057715.13, intron 8 of 12) protein_coding-intron (ENSMUSG00000057715.13, intron 8 of 13) 79081 ENSMUSG00000103561.1 ENSMUSG00000103561 ENSMUST00000195360 Gm38069 TEC Interval_62847 chr15 97394065 97395198 + 0 NA Intergenic Intergenic 33429 ENSMUSG00000044250.8 ENSMUSG00000044250 ENSMUST00000226495 Pced1b protein_coding Interval_24747 chr11 36589808 36590182 + 0 NA intron (ENSMUSG00000049336.16, intron 2 of 28) protein_coding-intron (ENSMUSG00000049336.16, intron 2 of 28) -132887 ENSMUSG00000065173.1 ENSMUSG00000065173 ENSMUST00000083239 Gm22127 snRNA Interval_60515 chr15 74584666 74585029 + 0 NA intron (ENSMUSG00000034730.17, intron 6 of 9) protein_coding-intron (ENSMUSG00000034730.17, intron 27 of 30) -3077 ENSMUSG00000034730.17 ENSMUSG00000034730 ENSMUST00000230935 Adgrb1 protein_coding Interval_88595 chr2 6458515 6460100 + 0 NA Intergenic Intergenic -12693 ENSMUSG00000086109.2 ENSMUSG00000086109 ENSMUST00000128589 Gm13391 lincRNA Interval_121310 chr4 154904300 154905135 + 0 NA Intergenic Intergenic -5582 ENSMUSG00000029059.9 ENSMUSG00000029059 ENSMUST00000132281 Prxl2b protein_coding Interval_51927 chr14 33988809 33989521 + 0 NA intron (ENSMUSG00000115726.1, intron 16 of 16) protein_coding-intron (ENSMUSG00000115726.1, intron 16 of 16) -10401 ENSMUSG00000044519.8 ENSMUSG00000044519 ENSMUST00000166737 Zfp488 protein_coding Interval_141203 chr6 125584024 125584812 + 0 NA intron (ENSMUSG00000001930.17, intron 6 of 14) protein_coding-intron (ENSMUSG00000001930.17, intron 7 of 10) 31455 ENSMUSG00000001930.17 ENSMUSG00000001930 ENSMUST00000146264 Vwf protein_coding Interval_23126 chr11 20067339 20067715 + 0 NA intron (ENSMUSG00000020152.7, intron 8 of 8) protein_coding-intron (ENSMUSG00000020152.7, intron 8 of 8) 45382 ENSMUSG00000020152.7 ENSMUSG00000020152 ENSMUST00000134779 Actr2 protein_coding Interval_128977 chr5 116420663 116421175 + 0 NA intron (ENSMUSG00000041548.4, intron 1 of 2) protein_coding-intron (ENSMUSG00000041548.4, intron 1 of 2) -5027 ENSMUSG00000041548.4 ENSMUSG00000041548 ENSMUST00000133335 Hspb8 protein_coding Interval_109453 chr3 142555038 142555936 + 0 NA Intergenic Intergenic -4539 ENSMUSG00000028268.14 ENSMUSG00000028268 ENSMUST00000142060 Gbp3 protein_coding Interval_157317 chr8 69237652 69238175 + 0 NA Intergenic Intergenic 2117 ENSMUSG00000110657.1 ENSMUSG00000110657 ENSMUST00000211891 Gm7684 processed_pseudogene Interval_68627 chr16 81811207 81811505 + 0 NA Intergenic Intergenic 19140 ENSMUSG00000116803.1 ENSMUSG00000116803 ENSMUST00000231467 Gm49558 processed_pseudogene Interval_58369 chr15 33745713 33746322 + 0 NA Intergenic Intergenic 11772 ENSMUSG00000115362.1 ENSMUSG00000115362 ENSMUST00000228506 Gm49088 processed_pseudogene Interval_152246 chr7 130903586 130905026 + 0 NA promoter-TSS (ENSMUSG00000040268.17) protein_coding-promoter-TSS (ENSMUSG00000040268.17) -3962 ENSMUSG00000104914.1 ENSMUSG00000104914 ENSMUST00000198082 Mir7061 miRNA Interval_89960 chr2 26856086 26857159 + 0 NA intron (ENSMUSG00000015787.15, intron 1 of 5) protein_coding-intron (ENSMUSG00000015787.15, intron 1 of 5) 176 ENSMUSG00000015787.15 ENSMUSG00000015787 ENSMUST00000102900 Abo protein_coding Interval_97402 chr2 135789050 135789263 + 0 NA intron (ENSMUSG00000039943.16, intron 1 of 4) protein_coding-intron (ENSMUSG00000039943.16, intron 1 of 36) 23771 ENSMUSG00000086928.1 ENSMUSG00000086928 ENSMUST00000140949 Gm14210 lincRNA Interval_154221 chr8 13548271 13551555 + 0 NA TTS (ENSMUSG00000031452.15) protein_coding-TTS (ENSMUSG00000031452.15) -2885 ENSMUSG00000110278.1 ENSMUSG00000110278 ENSMUST00000210253 Gm5608 lincRNA Interval_41689 chr12 117764789 117765308 + 0 NA Intergenic Intergenic 41076 ENSMUSG00000113840.1 ENSMUSG00000113840 ENSMUST00000223173 Gm18955 processed_pseudogene Interval_44444 chr13 44872784 44873983 + 0 NA intron (ENSMUSG00000038518.15, intron 3 of 5) protein_coding-intron (ENSMUSG00000038518.15, intron 4 of 18) -35100 ENSMUSG00000088189.1 ENSMUSG00000088189 ENSMUST00000157564 Gm22213 snoRNA Interval_45743 chr13 57549456 57550086 + 0 NA intron (ENSMUSG00000056222.15, intron 6 of 10) protein_coding-intron (ENSMUSG00000056222.15, intron 4 of 9) 273093 ENSMUSG00000114411.1 ENSMUSG00000114411 ENSMUST00000224461 Gm48176 processed_pseudogene Interval_12572 chr10 3397293 3397526 + 0 NA intron (ENSMUSG00000040653.6, intron 1 of 1) protein_coding-intron (ENSMUSG00000040653.6, intron 1 of 3) -27614 ENSMUSG00000080655.1 ENSMUSG00000080655 ENSMUST00000117005 Gm24482 miRNA Interval_144711 chr7 27666319 27667058 + 0 NA intron (ENSMUSG00000040390.13, intron 2 of 10) protein_coding-intron (ENSMUSG00000040390.13, intron 2 of 9) -1581 ENSMUSG00000040390.13 ENSMUSG00000040390 ENSMUST00000138243 Map3k10 protein_coding Interval_56283 chr14 116253661 116253870 + 0 NA intron (ENSMUSG00000022112.14, intron 7 of 7) protein_coding-intron (ENSMUSG00000022112.14, intron 7 of 7) -382487 ENSMUSG00000093497.1 ENSMUSG00000093497 ENSMUST00000176344 Gm20713 processed_transcript Interval_112260 chr4 39088523 39088771 + 0 NA Intergenic Intergenic 171147 ENSMUSG00000065344.1 ENSMUSG00000065344 ENSMUST00000083410 Gm25581 snRNA Interval_145419 chr7 34639274 34640540 + 0 NA TTS (ENSMUSG00000030499.9) protein_coding-TTS (ENSMUSG00000030499.9) -2195 ENSMUSG00000108723.1 ENSMUSG00000108723 ENSMUST00000206863 Gm44837 lincRNA Interval_3571 chr1 59651083 59651842 + 0 NA intron (ENSMUSG00000026021.15, intron 2 of 2) protein_coding-intron (ENSMUSG00000026021.15, intron 2 of 4) -3391 ENSMUSG00000103821.1 ENSMUSG00000103821 ENSMUST00000192922 D430013B06Rik TEC Interval_133340 chr6 3497532 3498936 + 0 NA promoter-TSS (ENSMUSG00000001376.17) protein_coding-promoter-TSS (ENSMUSG00000001376.17) -10805 ENSMUSG00000044156.14 ENSMUSG00000044156 ENSMUST00000200972 Hepacam2 protein_coding Interval_154233 chr8 13626724 13627716 + 0 NA intron (ENSMUSG00000031453.16, intron 3 of 6) protein_coding-intron (ENSMUSG00000031453.16, intron 2 of 23) 50231 ENSMUSG00000031453.16 ENSMUSG00000031453 ENSMUST00000132439 Rasa3 protein_coding Interval_37140 chr12 58919380 58920135 + 0 NA promoter-TSS (ENSMUSG00000112531.1) processed_pseudogene-promoter-TSS (ENSMUSG00000112531.1) -910 ENSMUSG00000112531.1 ENSMUSG00000112531 ENSMUST00000218825 Gm2649 processed_pseudogene Interval_47133 chr13 76162463 76162812 + 0 NA intron (ENSMUSG00000033991.9, intron 38 of 44) protein_coding-intron (ENSMUSG00000033991.9, intron 38 of 43) 24792 ENSMUSG00000033991.9 ENSMUSG00000033991 ENSMUST00000225147 Ttc37 protein_coding Interval_12979 chr10 8872631 8873532 + 0 NA intron (ENSMUSG00000015305.6, intron 1 of 3) protein_coding-intron (ENSMUSG00000015305.6, intron 1 of 19) -11556 ENSMUSG00000097597.2 ENSMUSG00000097597 ENSMUST00000180770 Gm26674 antisense Interval_109639 chr3 145632202 145633576 + 0 NA Intergenic Intergenic 17092 ENSMUSG00000028195.4 ENSMUSG00000028195 ENSMUST00000029846 Ccn1 protein_coding Interval_98747 chr2 154654629 154655227 + 0 NA intron (ENSMUSG00000038467.15, intron 1 of 4) protein_coding-intron (ENSMUSG00000038467.15, intron 1 of 4) 3223 ENSMUSG00000038467.15 ENSMUSG00000038467 ENSMUST00000136788 Chmp4b protein_coding Interval_138002 chr6 84072209 84073000 + 0 NA intron (ENSMUSG00000033788.15, intron 11 of 55) protein_coding-intron (ENSMUSG00000033788.15, intron 12 of 54) 34403 ENSMUSG00000087001.2 ENSMUSG00000087001 ENSMUST00000137673 Gm15475 antisense Interval_137115 chr6 67534546 67536006 + 0 NA exon (ENSMUSG00000051397.5, exon 1 of 1) protein_coding-exon (ENSMUSG00000051397.5, exon 1 of 1) 520 ENSMUSG00000051397.5 ENSMUSG00000051397 ENSMUST00000058178 Tacstd2 protein_coding Interval_18513 chr10 86835784 86835979 + 0 NA exon (ENSMUSG00000054027.8, exon 14 of 14) protein_coding-exon (ENSMUSG00000054027.8, exon 14 of 14) -3213 ENSMUSG00000089959.1 ENSMUSG00000089959 ENSMUST00000159445 Gm16268 antisense Interval_140519 chr6 119200913 119201718 + 0 NA intron (ENSMUSG00000041477.14, intron 3 of 5) protein_coding-intron (ENSMUSG00000041477.14, intron 5 of 8) -4425 ENSMUSG00000051331.16 ENSMUSG00000051331 ENSMUST00000239204 Cacna1c protein_coding Interval_154295 chr8 14089835 14090911 + 0 NA promoter-TSS (ENSMUSG00000074461.2) TEC-promoter-TSS (ENSMUSG00000074461.2) -88 ENSMUSG00000074461.2 ENSMUSG00000074461 ENSMUST00000098916 Gm10699 TEC Interval_91634 chr2 45061578 45061812 + 0 NA intron (ENSMUSG00000026872.18, intron 2 of 3) protein_coding-intron (ENSMUSG00000026872.18, intron 2 of 9) -38518 ENSMUSG00000092679.1 ENSMUSG00000092679 ENSMUST00000174938 Mir5129 miRNA Interval_158141 chr8 79148948 79149262 + 0 NA intron (ENSMUSG00000071064.15, intron 8 of 13) protein_coding-intron (ENSMUSG00000071064.15, intron 8 of 14) -76825 ENSMUSG00000110388.1 ENSMUSG00000110388 ENSMUST00000211572 Gm30329 antisense Interval_81359 chr18 59087901 59088169 + 0 NA Intergenic Intergenic 25569 ENSMUSG00000050875.11 ENSMUSG00000050875 ENSMUST00000175830 Minar2 protein_coding Interval_138734 chr6 91523029 91523255 + 0 NA TTS (ENSMUSG00000034192.5) protein_coding-TTS (ENSMUSG00000034192.5) 733 ENSMUSG00000108584.1 ENSMUSG00000108584 ENSMUST00000205547 Gm45216 sense_overlapping Interval_140753 chr6 121068013 121068252 + 0 NA intron (ENSMUSG00000097011.2, intron 1 of 1) protein_coding-intron (ENSMUSG00000051586.17, intron 1 of 17) 3536 ENSMUSG00000097011.2 ENSMUSG00000097011 ENSMUST00000203697 Gm4651 processed_transcript Interval_116799 chr4 117345980 117346522 + 0 NA intron (ENSMUSG00000028677.19, intron 2 of 2) protein_coding-intron (ENSMUSG00000028677.19, intron 2 of 14) 50107 ENSMUSG00000085749.1 ENSMUSG00000085749 ENSMUST00000139618 Gm12843 antisense Interval_92159 chr2 54790406 54790598 + 0 NA intron (ENSMUSG00000060988.12, intron 3 of 11) protein_coding-intron (ENSMUSG00000060988.12, intron 2 of 10) -213483 ENSMUSG00000089352.1 ENSMUSG00000089352 ENSMUST00000158727 Gm25489 snRNA Interval_153256 chr7 142960129 142961765 + 0 NA Intergenic Intergenic 7770 ENSMUSG00000009248.6 ENSMUSG00000009248 ENSMUST00000121862 Ascl2 protein_coding Interval_65728 chr16 26153206 26153434 + 0 NA Intergenic Intergenic -112052 ENSMUSG00000090203.2 ENSMUSG00000090203 ENSMUST00000159040 AU015336 sense_intronic Interval_45364 chr13 54670011 54671722 + 0 NA Intergenic Intergenic 16942 ENSMUSG00000034928.16 ENSMUSG00000034928 ENSMUST00000150626 Rnf44 protein_coding Interval_18019 chr10 81389618 81390545 + 0 NA promoter-TSS (ENSMUSG00000114004.1) protein_coding-promoter-TSS (ENSMUSG00000114004.1) -230 ENSMUSG00000114004.1 ENSMUSG00000114004 ENSMUST00000156229 Gm48552 protein_coding Interval_73731 chr17 43045876 43046445 + 0 NA intron (ENSMUSG00000023915.5, intron 3 of 5) protein_coding-intron (ENSMUSG00000023915.5, intron 3 of 5) 29592 ENSMUSG00000023915.5 ENSMUSG00000023915 ENSMUST00000233482 Tnfrsf21 protein_coding Interval_144268 chr7 24140887 24141186 + 0 NA TTS (ENSMUSG00000047603.9) protein_coding-TTS (ENSMUSG00000047603.9) 6808 ENSMUSG00000047603.9 ENSMUSG00000047603 ENSMUST00000056549 Zfp235 protein_coding Interval_76527 chr17 80778841 80779163 + 0 NA Intergenic Intergenic 50871 ENSMUSG00000054957.5 ENSMUSG00000054957 ENSMUST00000068277 Gm9959 pseudogene Interval_28658 chr11 77606771 77608539 + 0 NA exon (ENSMUSG00000017291.13, exon 1 of 20) protein_coding-exon (ENSMUSG00000017291.13, exon 1 of 20) 160 ENSMUSG00000017291.13 ENSMUSG00000017291 ENSMUST00000058496 Taok1 protein_coding Interval_158806 chr8 86794520 86794981 + 0 NA Intergenic Intergenic -48816 ENSMUSG00000036840.5 ENSMUSG00000036840 ENSMUST00000045296 Siah1a protein_coding Interval_141546 chr6 129085125 129087056 + 0 NA Intergenic Intergenic 14823 ENSMUSG00000030155.7 ENSMUSG00000030155 ENSMUST00000032258 Clec2e protein_coding Interval_170890 chr9 111632794 111633496 + 0 NA intron (ENSMUSG00000032502.8, intron 1 of 9) protein_coding-intron (ENSMUSG00000032502.8, intron 2 of 10) -19130 ENSMUSG00000077156.1 ENSMUSG00000077156 ENSMUST00000103968 n-R5s90 rRNA Interval_16470 chr10 63043145 63043427 + 0 NA intron (ENSMUSG00000020072.15, intron 2 of 4) protein_coding-intron (ENSMUSG00000020072.15, intron 2 of 9) -10924 ENSMUSG00000020072.15 ENSMUSG00000020072 ENSMUST00000130531 Pbld2 protein_coding Interval_61272 chr15 80410974 80411488 + 0 NA Intergenic Intergenic 21903 ENSMUSG00000022416.15 ENSMUSG00000022416 ENSMUST00000160175 Cacna1i protein_coding Interval_106256 chr3 94952909 94954509 + 0 NA promoter-TSS (ENSMUSG00000005774.12) protein_coding-promoter-TSS (ENSMUSG00000005774.12) -400 ENSMUSG00000005774.12 ENSMUSG00000005774 ENSMUST00000142708 Rfx5 protein_coding Interval_91447 chr2 38931785 38932866 + 0 NA intron (ENSMUSG00000046618.7, intron 1 of 7) protein_coding-intron (ENSMUSG00000046618.7, intron 1 of 7) 347 ENSMUSG00000046618.7 ENSMUSG00000046618 ENSMUST00000057279 Olfml2a protein_coding Interval_97585 chr2 140158963 140159633 + 0 NA promoter-TSS (ENSMUSG00000045624.15) protein_coding-promoter-TSS (ENSMUSG00000045624.15) -3993 ENSMUSG00000045624.15 ENSMUSG00000045624 ENSMUST00000141086 Esf1 protein_coding Interval_32027 chr11 104541477 104542481 + 0 NA intron (ENSMUSG00000020687.13, intron 1 of 3) protein_coding-intron (ENSMUSG00000020687.13, intron 1 of 18) 8641 ENSMUSG00000020687.13 ENSMUSG00000020687 ENSMUST00000135303 Cdc27 protein_coding Interval_151207 chr7 119658496 119659097 + 0 NA intron (ENSMUSG00000033533.14, intron 10 of 12) protein_coding-intron (ENSMUSG00000033533.14, intron 11 of 13) -16436 ENSMUSG00000109093.1 ENSMUSG00000109093 ENSMUST00000208211 Gm19950 antisense Interval_48395 chr13 98728204 98728430 + 0 NA intron (ENSMUSG00000041685.16, intron 8 of 9) protein_coding-intron (ENSMUSG00000041685.16, intron 24 of 25) -4669 ENSMUSG00000114612.1 ENSMUSG00000114612 ENSMUST00000225686 Gm47550 TEC Interval_109214 chr3 137951662 137953541 + 0 NA intron (ENSMUSG00000028159.14, intron 1 of 2) protein_coding-intron (ENSMUSG00000028159.14, intron 3 of 8) 2112 ENSMUSG00000028159.14 ENSMUSG00000028159 ENSMUST00000199541 Dapp1 protein_coding Interval_72912 chr17 33358222 33359360 + 0 NA promoter-TSS (ENSMUSG00000003929.11) protein_coding-promoter-TSS (ENSMUSG00000003929.11) 77 ENSMUSG00000003929.11 ENSMUSG00000003929 ENSMUST00000235063 Zfp81 protein_coding Interval_160894 chr8 114746402 114746636 + 0 NA intron (ENSMUSG00000004637.15, intron 8 of 8) protein_coding-intron (ENSMUSG00000004637.15, intron 8 of 8) 34352 ENSMUSG00000004637.15 ENSMUSG00000004637 ENSMUST00000162052 Wwox protein_coding Interval_72443 chr17 29841460 29843061 + 0 NA exon (ENSMUSG00000043557.16, exon 9 of 16) protein_coding-exon (ENSMUSG00000043557.16, exon 9 of 16) -2279 ENSMUSG00000043557.16 ENSMUSG00000043557 ENSMUST00000167102 Mdga1 protein_coding Interval_141668 chr6 133026183 133026489 + 0 NA Intergenic Intergenic -7958 ENSMUSG00000107746.1 ENSMUSG00000107746 ENSMUST00000204488 Gm18690 unprocessed_pseudogene Interval_37825 chr12 72303397 72304213 + 0 NA exon (ENSMUSG00000021087.18, exon 3 of 9) protein_coding-exon (ENSMUSG00000021087.18, exon 3 of 9) -67257 ENSMUSG00000021087.18 ENSMUSG00000021087 ENSMUST00000221756 Rtn1 protein_coding Interval_114010 chr4 62433943 62435172 + 0 NA exon (ENSMUSG00000063851.12, exon 1 of 3) protein_coding-exon (ENSMUSG00000063851.12, exon 1 of 3) 695 ENSMUSG00000063851.12 ENSMUSG00000063851 ENSMUST00000079420 Rnf183 protein_coding Interval_146201 chr7 44655352 44655818 + 0 NA intron (ENSMUSG00000030739.18, intron 5 of 40) protein_coding-intron (ENSMUSG00000030739.18, intron 7 of 41) 10157 ENSMUSG00000109352.1 ENSMUSG00000109352 ENSMUST00000209087 Gm18256 processed_pseudogene Interval_3604 chr1 59940684 59941122 + 0 NA intron (ENSMUSG00000041040.12, intron 1 of 7) protein_coding-intron (ENSMUSG00000041040.12, intron 1 of 7) 11215 ENSMUSG00000103696.1 ENSMUSG00000103696 ENSMUST00000191628 Gm37531 TEC Interval_124743 chr5 53638567 53638767 + 0 NA promoter-TSS (ENSMUSG00000039191.12) protein_coding-promoter-TSS (ENSMUSG00000039191.12) 35 ENSMUSG00000039191.12 ENSMUSG00000039191 ENSMUST00000202092 Rbpj protein_coding Interval_126234 chr5 83536632 83537915 + 0 NA Intergenic Intergenic 72479 ENSMUSG00000104537.1 ENSMUSG00000104537 ENSMUST00000196348 Gm44303 miRNA Interval_146680 chr7 49373366 49373595 + 0 NA intron (ENSMUSG00000052512.17, intron 3 of 4) protein_coding-intron (ENSMUSG00000052512.17, intron 2 of 5) 27386 ENSMUSG00000109051.1 ENSMUSG00000109051 ENSMUST00000208060 Gm44913 TEC Interval_138058 chr6 84893069 84894081 + 0 NA exon (ENSMUSG00000033769.16, exon 1 of 1) protein_coding-exon (ENSMUSG00000033769.16, exon 1 of 1) 413 ENSMUSG00000033769.16 ENSMUSG00000033769 ENSMUST00000162786 Exoc6b protein_coding Interval_45483 chr13 55390064 55390444 + 0 NA Intergenic Intergenic 13272 ENSMUSG00000052087.14 ENSMUSG00000052087 ENSMUST00000135851 Rgs14 protein_coding Interval_92584 chr2 60870568 60871668 + 0 NA intron (ENSMUSG00000026970.16, intron 1 of 13) protein_coding-intron (ENSMUSG00000026970.16, intron 1 of 13) 10320 ENSMUSG00000026970.16 ENSMUSG00000026970 ENSMUST00000128866 Rbms1 protein_coding Interval_22155 chr11 6686867 6687231 + 0 NA TTS (ENSMUSG00000083075.1) processed_pseudogene-TTS (ENSMUSG00000083075.1) 1225 ENSMUSG00000083075.1 ENSMUSG00000083075 ENSMUST00000121445 Gm11980 processed_pseudogene Interval_35094 chr12 17265981 17267111 + 0 NA promoter-TSS (ENSMUSG00000020571.13) protein_coding-promoter-TSS (ENSMUSG00000020571.13) -49 ENSMUSG00000020571.13 ENSMUSG00000020571 ENSMUST00000163000 Pdia6 protein_coding Interval_107185 chr3 104431119 104431746 + 0 NA intron (ENSMUSG00000032913.13, intron 1 of 1) protein_coding-intron (ENSMUSG00000032913.13, intron 1 of 1) -13105 ENSMUSG00000106453.1 ENSMUSG00000106453 ENSMUST00000200606 Gm9273 processed_pseudogene Interval_148636 chr7 83641270 83641823 + 0 NA exon (ENSMUSG00000046027.17, exon 6 of 6) protein_coding-exon (ENSMUSG00000046027.17, exon 6 of 6) 8175 ENSMUSG00000108825.1 ENSMUSG00000108825 ENSMUST00000207355 Gm45838 TEC Interval_45796 chr13 58139841 58140422 + 0 NA Intergenic Intergenic -8413 ENSMUSG00000097717.2 ENSMUSG00000097717 ENSMUST00000181908 1700066J03Rik processed_transcript Interval_18345 chr10 85071434 85072402 + 0 NA Intergenic Intergenic 30577 ENSMUSG00000050035.7 ENSMUSG00000050035 ENSMUST00000216889 Fhl4 protein_coding Interval_33755 chr11 118279228 118280007 + 0 NA intron (ENSMUSG00000033909.17, intron 5 of 18) protein_coding-intron (ENSMUSG00000033909.17, intron 5 of 20) 10455 ENSMUSG00000033909.17 ENSMUSG00000033909 ENSMUST00000151433 Usp36 protein_coding Interval_730 chr1 10231908 10233682 + 0 NA promoter-TSS (ENSMUSG00000067851.11) protein_coding-promoter-TSS (ENSMUSG00000067851.11) -33993 ENSMUSG00000102556.1 ENSMUSG00000102556 ENSMUST00000192111 Gm37569 TEC Interval_158669 chr8 85047134 85047667 + 0 NA exon (ENSMUSG00000031691.14, exon 11 of 25) protein_coding-exon (ENSMUSG00000031691.14, exon 11 of 25) -2807 ENSMUSG00000077527.1 ENSMUSG00000077527 ENSMUST00000104339 Gm25506 snoRNA Interval_36847 chr12 54642100 54643473 + 0 NA Intergenic Intergenic 3226 ENSMUSG00000106344.1 ENSMUSG00000106344 ENSMUST00000197752 Mir1892 miRNA Interval_59708 chr15 58779934 58780342 + 0 NA TTS (ENSMUSG00000093677.1) sense_overlapping-TTS (ENSMUSG00000093677.1) 1813 ENSMUSG00000093677.1 ENSMUSG00000093677 ENSMUST00000176387 Gm20712 sense_overlapping Interval_11104 chr1 179386152 179387104 + 0 NA intron (ENSMUSG00000055067.15, intron 1 of 1) protein_coding-intron (ENSMUSG00000055067.15, intron 1 of 1) 131377 ENSMUSG00000055067.15 ENSMUSG00000055067 ENSMUST00000194237 Smyd3 protein_coding Interval_53589 chr14 59616439 59617000 + 0 NA Intergenic Intergenic 5948 ENSMUSG00000114804.1 ENSMUSG00000114804 ENSMUST00000223850 Gm18073 processed_pseudogene Interval_25880 chr11 52313566 52314881 + 0 NA Intergenic Intergenic 38168 ENSMUSG00000086395.1 ENSMUSG00000086395 ENSMUST00000150973 A630014C17Rik antisense Interval_55997 chr14 103802465 103802738 + 0 NA Intergenic Intergenic 41094 ENSMUSG00000022122.15 ENSMUSG00000022122 ENSMUST00000227824 Ednrb protein_coding Interval_101923 chr3 11562999 11564327 + 0 NA Intergenic Intergenic 95847 ENSMUSG00000098085.1 ENSMUSG00000098085 ENSMUST00000182028 Gm8919 processed_pseudogene Interval_26109 chr11 54336254 54336477 + 0 NA exon (ENSMUSG00000020333.17, exon 1 of 10) protein_coding-exon (ENSMUSG00000020333.17, exon 1 of 10) 16213 ENSMUSG00000020333.17 ENSMUSG00000020333 ENSMUST00000139484 Acsl6 protein_coding Interval_43241 chr13 26570848 26571381 + 0 NA Intergenic Intergenic 78560 ENSMUSG00000060198.7 ENSMUSG00000060198 ENSMUST00000180940 Gm11353 processed_pseudogene Interval_32692 chr11 109695184 109695681 + 0 NA intron (ENSMUSG00000020614.13, intron 1 of 11) protein_coding-intron (ENSMUSG00000020614.13, intron 1 of 10) 26847 ENSMUSG00000020614.13 ENSMUSG00000020614 ENSMUST00000144972 Fam20a protein_coding Interval_104641 chr3 69036041 69036255 + 0 NA TTS (ENSMUSG00000034317.14) protein_coding-TTS (ENSMUSG00000034317.14) 8575 ENSMUSG00000034317.14 ENSMUSG00000034317 ENSMUST00000153259 Trim59 protein_coding Interval_131632 chr5 138954603 138956161 + 0 NA Intergenic Intergenic 38899 ENSMUSG00000025856.15 ENSMUSG00000025856 ENSMUST00000132051 Pdgfa protein_coding Interval_113786 chr4 58581591 58581877 + 0 NA Intergenic Intergenic -8030 ENSMUSG00000081186.1 ENSMUSG00000081186 ENSMUST00000121244 Gm12578 processed_pseudogene Interval_119790 chr4 140004034 140005390 + 0 NA Intergenic Intergenic -36686 ENSMUSG00000078234.6 ENSMUSG00000078234 ENSMUST00000105031 Klhdc7a protein_coding Interval_80189 chr18 38122272 38122684 + 0 NA Intergenic Intergenic 81362 ENSMUSG00000051375.15 ENSMUSG00000051375 ENSMUST00000193828 Pcdh1 protein_coding Interval_99401 chr2 160640095 160640542 + 0 NA Intergenic Intergenic 15850 ENSMUSG00000094247.1 ENSMUSG00000094247 ENSMUST00000175047 Gm23968 miRNA Interval_153789 chr8 8611959 8612735 + 0 NA promoter-TSS (ENSMUSG00000109436.1) lincRNA-promoter-TSS (ENSMUSG00000109436.1) 83 ENSMUSG00000109436.1 ENSMUSG00000109436 ENSMUST00000208426 Gm45075 lincRNA Interval_73253 chr17 35795428 35796002 + 0 NA Intergenic Intergenic 23265 ENSMUSG00000092171.1 ENSMUSG00000092171 ENSMUST00000172874 4833427F10Rik lincRNA Interval_37022 chr12 56519618 56521765 + 0 NA intron (ENSMUSG00000112343.1, intron 1 of 7) processed_transcript-intron (ENSMUSG00000112343.1, intron 1 of 6) 8736 ENSMUSG00000112343.1 ENSMUSG00000112343 ENSMUST00000219423 Sfta3-ps processed_transcript Interval_171666 chr9 120032341 120032595 + 0 NA intron (ENSMUSG00000052336.7, intron 2 of 2) protein_coding-intron (ENSMUSG00000052336.7, intron 2 of 2) -12653 ENSMUSG00000079243.4 ENSMUSG00000079243 ENSMUST00000238557 Xirp1 protein_coding Interval_137282 chr6 71030479 71031137 + 0 NA Intergenic Intergenic 8925 ENSMUSG00000077369.1 ENSMUSG00000077369 ENSMUST00000104181 Gm23485 snRNA Interval_5853 chr1 92632855 92633226 + 0 NA Intergenic Intergenic 6869 ENSMUSG00000073616.10 ENSMUSG00000073616 ENSMUST00000129730 Cops9 protein_coding Interval_80459 chr18 42363721 42364884 + 0 NA Intergenic Intergenic -30773 ENSMUSG00000024497.4 ENSMUSG00000024497 ENSMUST00000237247 Pou4f3 protein_coding Interval_156204 chr8 45999257 46000562 + 0 NA promoter-TSS (ENSMUSG00000050914.16) protein_coding-promoter-TSS (ENSMUSG00000050914.16) 5798 ENSMUSG00000050914.16 ENSMUSG00000050914 ENSMUST00000141334 Ankrd37 protein_coding Interval_148273 chr7 80220595 80221690 + 0 NA exon (ENSMUSG00000030539.13, exon 13 of 13) protein_coding-exon (ENSMUSG00000030539.13, exon 13 of 13) 11663 ENSMUSG00000030538.15 ENSMUSG00000030538 ENSMUST00000206618 Cib1 protein_coding Interval_92891 chr2 68229324 68229695 + 0 NA intron (ENSMUSG00000027030.15, intron 1 of 2) protein_coding-intron (ENSMUSG00000027030.15, intron 16 of 17) 147718 ENSMUSG00000081257.1 ENSMUSG00000081257 ENSMUST00000117875 Gm13607 processed_pseudogene Interval_122132 chr5 17899078 17899293 + 0 NA Intergenic Intergenic -63364 ENSMUSG00000028777.8 ENSMUSG00000028777 ENSMUST00000030561 Gnat3 protein_coding Interval_61962 chr15 85522939 85523880 + 0 NA Intergenic Intergenic 12597 ENSMUSG00000063548.3 ENSMUSG00000063548 ENSMUST00000079690 Gm4825 processed_pseudogene Interval_159932 chr8 105261615 105261866 + 0 NA intron (ENSMUSG00000031887.13, intron 1 of 2) protein_coding-intron (ENSMUSG00000031887.13, intron 1 of 4) 2863 ENSMUSG00000031887.13 ENSMUSG00000031887 ENSMUST00000147670 Tradd protein_coding Interval_104791 chr3 73433824 73435585 + 0 NA intron (ENSMUSG00000102362.1, intron 2 of 7) lincRNA-intron (ENSMUSG00000102820.1, intron 4 of 4) 46947 ENSMUSG00000102362.1 ENSMUSG00000102362 ENSMUST00000194514 4930509J09Rik lincRNA Interval_79136 chr18 24872120 24872518 + 0 NA intron (ENSMUSG00000034295.10, intron 3 of 24) protein_coding-intron (ENSMUSG00000034295.10, intron 3 of 26) 111156 ENSMUSG00000088920.1 ENSMUSG00000088920 ENSMUST00000158295 Gm24294 misc_RNA Interval_66682 chr16 36090891 36091831 + 0 NA intron (ENSMUSG00000075229.11, intron 2 of 2) protein_coding-intron (ENSMUSG00000075229.11, intron 4 of 4) 2157 ENSMUSG00000075229.11 ENSMUSG00000075229 ENSMUST00000231239 Ccdc58 protein_coding Interval_23762 chr11 26013671 26014499 + 0 NA intron (ENSMUSG00000032985.15, intron 1 of 5) protein_coding-intron (ENSMUSG00000032985.15, intron 1 of 6) -188155 ENSMUSG00000099015.1 ENSMUSG00000099015 ENSMUST00000185114 Mir6372 miRNA Interval_7916 chr1 134570030 134571125 + 0 NA intron (ENSMUSG00000042207.17, intron 1 of 25) protein_coding-intron (ENSMUSG00000042207.17, intron 1 of 26) -23627 ENSMUSG00000046367.10 ENSMUSG00000046367 ENSMUST00000185836 Mgat4e protein_coding Interval_53648 chr14 60579896 60581270 + 0 NA intron (ENSMUSG00000101797.1, intron 2 of 2) lincRNA-intron (ENSMUSG00000101797.1, intron 2 of 2) 16319 ENSMUSG00000114408.1 ENSMUSG00000114408 ENSMUST00000224210 Gm47810 processed_pseudogene Interval_9003 chr1 153030939 153034116 + 0 NA promoter-TSS (ENSMUSG00000042751.14) protein_coding-promoter-TSS (ENSMUSG00000042751.14) 56980 ENSMUSG00000099969.1 ENSMUSG00000099969 ENSMUST00000190117 Gm28960 antisense Interval_172526 chrX 26158947 26159360 + 0 NA Intergenic Intergenic -70828 ENSMUSG00000080498.2 ENSMUSG00000080498 ENSMUST00000116848 Gm26302 miRNA Interval_39681 chr12 92127436 92127619 + 0 NA Intergenic Intergenic 33912 ENSMUSG00000113643.1 ENSMUSG00000113643 ENSMUST00000222953 Gm40598 processed_pseudogene Interval_169104 chr9 92527165 92527443 + 0 NA TTS (ENSMUSG00000077400.1) snoRNA-TTS (ENSMUSG00000077400.1) 404 ENSMUSG00000077400.1 ENSMUSG00000077400 ENSMUST00000104212 Gm25417 snoRNA Interval_30126 chr11 89439247 89439639 + 0 NA intron (ENSMUSG00000047773.15, intron 15 of 21) protein_coding-intron (ENSMUSG00000047773.15, intron 13 of 16) 136720 ENSMUSG00000085798.1 ENSMUSG00000085798 ENSMUST00000140754 Gm2018 lincRNA Interval_3035 chr1 52431359 52432464 + 0 NA Intergenic Intergenic 12633 ENSMUSG00000065192.1 ENSMUSG00000065192 ENSMUST00000083258 Gm23460 snRNA Interval_44244 chr13 42865114 42866945 + 0 NA promoter-TSS (ENSMUSG00000054728.17) protein_coding-promoter-TSS (ENSMUSG00000054728.17) 3573 ENSMUSG00000085276.3 ENSMUSG00000085276 ENSMUST00000162331 Gm15812 processed_pseudogene Interval_152418 chr7 132895977 132898626 + 0 NA intron (ENSMUSG00000097595.2, intron 1 of 2) protein_coding-intron (ENSMUSG00000030849.18, intron 2 of 6) -8614 ENSMUSG00000097595.2 ENSMUSG00000097595 ENSMUST00000180905 1500002F19Rik processed_transcript Interval_133875 chr6 13879660 13880017 + 0 NA intron (ENSMUSG00000097616.7, intron 1 of 2) lincRNA-intron (ENSMUSG00000097616.7, intron 1 of 2) 8269 ENSMUSG00000097616.7 ENSMUSG00000097616 ENSMUST00000181225 1110019D14Rik lincRNA Interval_107773 chr3 113846300 113847448 + 0 NA Intergenic Intergenic -7862 ENSMUSG00000106084.1 ENSMUSG00000106084 ENSMUST00000197877 Gm18163 processed_pseudogene Interval_20814 chr10 121246845 121247273 + 0 NA Intergenic Intergenic 4057 ENSMUSG00000112871.1 ENSMUSG00000112871 ENSMUST00000219186 Gm35404 lincRNA Interval_64576 chr16 13424343 13424631 + 0 NA intron (ENSMUSG00000087526.2, intron 3 of 7) antisense-intron (ENSMUSG00000087526.2, intron 1 of 3) -25036 ENSMUSG00000076972.2 ENSMUSG00000076972 ENSMUST00000103784 Mir193b miRNA Interval_127801 chr5 107916649 107917185 + 0 NA intron (ENSMUSG00000029270.10, intron 1 of 3) protein_coding-intron (ENSMUSG00000029270.10, intron 2 of 4) 9572 ENSMUSG00000077426.1 ENSMUSG00000077426 ENSMUST00000104238 Gm26387 snoRNA Interval_45663 chr13 56657946 56658785 + 0 NA Intergenic Intergenic 27152 ENSMUSG00000035493.10 ENSMUSG00000035493 ENSMUST00000226024 Tgfbi protein_coding Interval_25240 chr11 45794266 45796097 + 0 NA Intergenic Intergenic -12906 ENSMUSG00000086686.1 ENSMUSG00000086686 ENSMUST00000137002 F630206G17Rik processed_transcript Interval_162341 chr8 127268097 127268868 + 0 NA intron (ENSMUSG00000025812.18, intron 1 of 1) protein_coding-intron (ENSMUSG00000025812.18, intron 2 of 23) 97078 ENSMUSG00000025812.18 ENSMUSG00000025812 ENSMUST00000159940 Pard3 protein_coding Interval_68105 chr16 65107396 65107606 + 0 NA Intergenic Intergenic -1647 ENSMUSG00000050783.5 ENSMUSG00000050783 ENSMUST00000063076 Htr1f protein_coding Interval_92837 chr2 66176893 66177853 + 0 NA Intergenic Intergenic -10463 ENSMUSG00000086671.1 ENSMUSG00000086671 ENSMUST00000128859 Gm13618 antisense Interval_152796 chr7 137712617 137713041 + 0 NA Intergenic Intergenic -21437 ENSMUSG00000110090.1 ENSMUSG00000110090 ENSMUST00000209434 Gm45682 lincRNA Interval_114431 chr4 76175224 76175429 + 0 NA intron (ENSMUSG00000028399.18, intron 3 of 30) protein_coding-intron (ENSMUSG00000028399.18, intron 4 of 29) -90869 ENSMUSG00000028399.18 ENSMUSG00000028399 ENSMUST00000134604 Ptprd protein_coding Interval_66432 chr16 33820429 33821229 + 0 NA TTS (ENSMUSG00000022824.12) protein_coding-TTS (ENSMUSG00000022824.12) 3451 ENSMUSG00000116916.1 ENSMUSG00000116916 ENSMUST00000231807 Gm34967 processed_pseudogene Interval_85250 chr19 24166541 24167184 + 0 NA intron (ENSMUSG00000024812.11, intron 1 of 22) protein_coding-intron (ENSMUSG00000024812.11, intron 1 of 22) 12792 ENSMUSG00000118371.1 ENSMUSG00000118371 ENSMUST00000237530 Gm50308 processed_pseudogene Interval_151714 chr7 126218311 126218672 + 0 NA Intergenic Intergenic 24136 ENSMUSG00000108309.1 ENSMUSG00000108309 ENSMUST00000205724 Gm44703 processed_pseudogene Interval_120063 chr4 141609890 141610180 + 0 NA Intergenic Intergenic -3939 ENSMUSG00000006219.12 ENSMUSG00000006219 ENSMUST00000133874 Fblim1 protein_coding Interval_77602 chr17 92825298 92826105 + 0 NA Intergenic Intergenic -106625 ENSMUSG00000117625.1 ENSMUSG00000117625 ENSMUST00000234136 Gm21018 processed_pseudogene Interval_3279 chr1 55482282 55482898 + 0 NA intron (ENSMUSG00000038349.10, intron 1 of 5) protein_coding-intron (ENSMUSG00000038349.10, intron 1 of 5) -37566 ENSMUSG00000100309.1 ENSMUSG00000100309 ENSMUST00000186507 Gm6644 processed_pseudogene Interval_167026 chr9 64644245 64644677 + 0 NA intron (ENSMUSG00000036466.17, intron 7 of 24) protein_coding-intron (ENSMUSG00000036466.17, intron 7 of 24) 81259 ENSMUSG00000004771.12 ENSMUSG00000004771 ENSMUST00000165083 Rab11a protein_coding Interval_11100 chr1 179360629 179361666 + 0 NA intron (ENSMUSG00000055067.15, intron 5 of 11) protein_coding-intron (ENSMUSG00000055067.15, intron 5 of 11) 156858 ENSMUSG00000055067.15 ENSMUSG00000055067 ENSMUST00000194237 Smyd3 protein_coding Interval_127998 chr5 110158331 110158820 + 0 NA intron (ENSMUSG00000086247.7, intron 1 of 1) protein_coding-intron (ENSMUSG00000014668.15, intron 11 of 17) -4453 ENSMUSG00000105541.1 ENSMUSG00000105541 ENSMUST00000200403 Gm43136 antisense Interval_41871 chr13 3726177 3726744 + 0 NA Intergenic Intergenic -33365 ENSMUSG00000113759.1 ENSMUSG00000113759 ENSMUST00000223157 Gm47695 lincRNA Interval_49295 chr13 110382459 110383083 + 0 NA Intergenic Intergenic -13241 ENSMUSG00000021701.8 ENSMUSG00000021701 ENSMUST00000225156 Plk2 protein_coding Interval_121449 chr4 155868979 155870051 + 0 NA promoter-TSS (ENSMUSG00000029034.9) protein_coding-promoter-TSS (ENSMUSG00000029034.9) -100 ENSMUSG00000029034.9 ENSMUSG00000029034 ENSMUST00000132632 Ints11 protein_coding Interval_100274 chr2 168111906 168112503 + 0 NA Intergenic Intergenic -2673 ENSMUSG00000118526.2 ENSMUSG00000118526 ENSMUST00000239040 AL831766.1 unitary_pseudogene Interval_173253 chrX 75381905 75383012 + 0 NA promoter-TSS (ENSMUSG00000031196.13) protein_coding-promoter-TSS (ENSMUSG00000031196.13) 36 ENSMUSG00000031198.4 ENSMUSG00000031198 ENSMUST00000123540 Fundc2 protein_coding Interval_23654 chr11 24110605 24110944 + 0 NA intron (ENSMUSG00000086612.1, intron 3 of 3) protein_coding-intron (ENSMUSG00000000861.15, intron 2 of 4) 4631 ENSMUSG00000086612.1 ENSMUSG00000086612 ENSMUST00000133819 Gm12064 antisense Interval_36269 chr12 40498850 40499106 + 0 NA intron (ENSMUSG00000035954.10, intron 1 of 5) protein_coding-intron (ENSMUSG00000035954.10, intron 1 of 52) 52895 ENSMUSG00000035954.10 ENSMUSG00000035954 ENSMUST00000220850 Dock4 protein_coding Interval_57831 chr15 22613987 22614541 + 0 NA intron (ENSMUSG00000040420.15, intron 1 of 6) protein_coding-intron (ENSMUSG00000040420.15, intron 1 of 6) 100566 ENSMUSG00000021927.7 ENSMUSG00000021927 ENSMUST00000022493 Hnrnpa1l2-ps2 processed_pseudogene Interval_144691 chr7 27552829 27553642 + 0 NA promoter-TSS (ENSMUSG00000049643.15) protein_coding-promoter-TSS (ENSMUSG00000049643.15) -32 ENSMUSG00000049643.15 ENSMUSG00000049643 ENSMUST00000186501 2310022A10Rik protein_coding Interval_128985 chr5 116453281 116453790 + 0 NA exon (ENSMUSG00000063919.11, exon 9 of 13) protein_coding-exon (ENSMUSG00000063919.11, exon 9 of 13) 3949 ENSMUSG00000107021.1 ENSMUSG00000107021 ENSMUST00000201273 Gm42853 TEC Interval_137623 chr6 76202713 76203035 + 0 NA Intergenic Intergenic -2596 ENSMUSG00000064490.1 ENSMUSG00000064490 ENSMUST00000082556 Gm22283 snRNA Interval_142091 chr6 137101890 137103033 + 0 NA intron (ENSMUSG00000030222.13, intron 2 of 4) protein_coding-intron (ENSMUSG00000030222.13, intron 2 of 4) 37602 ENSMUSG00000030222.13 ENSMUSG00000030222 ENSMUST00000149100 Rerg protein_coding Interval_7315 chr1 128821803 128822730 + 0 NA Intergenic Intergenic -47845 ENSMUSG00000097283.1 ENSMUSG00000097283 ENSMUST00000181951 Gm26686 lincRNA Interval_27795 chr11 70038219 70039197 + 0 NA intron (ENSMUSG00000020886.17, intron 7 of 18) protein_coding-intron (ENSMUSG00000020886.17, intron 7 of 18) 11709 ENSMUSG00000020886.17 ENSMUSG00000020886 ENSMUST00000131497 Dlg4 protein_coding Interval_52523 chr14 47320088 47320345 + 0 NA TTS (ENSMUSG00000115728.1) processed_pseudogene-TTS (ENSMUSG00000115728.1) 840 ENSMUSG00000115728.1 ENSMUSG00000115728 ENSMUST00000227470 Gm49190 processed_pseudogene Interval_11527 chr1 182488006 182488681 + 0 NA intron (ENSMUSG00000026509.15, intron 7 of 9) protein_coding-intron (ENSMUSG00000026509.15, intron 7 of 20) -1686 ENSMUSG00000102234.1 ENSMUSG00000102234 ENSMUST00000195868 Gm37885 antisense Interval_75720 chr17 70848592 70849847 + 0 NA exon (ENSMUSG00000047407.17, exon 1 of 2) protein_coding-exon (ENSMUSG00000047407.17, exon 1 of 2) 595 ENSMUSG00000047407.17 ENSMUSG00000047407 ENSMUST00000125329 Tgif1 protein_coding Interval_25196 chr11 45127705 45127904 + 0 NA Intergenic Intergenic -10876 ENSMUSG00000084773.1 ENSMUSG00000084773 ENSMUST00000143869 Gm12159 lincRNA Interval_69304 chr16 92067956 92068543 + 0 NA intron (ENSMUSG00000039680.10, intron 1 of 2) protein_coding-intron (ENSMUSG00000039680.10, intron 1 of 2) 9436 ENSMUSG00000039680.10 ENSMUSG00000039680 ENSMUST00000138961 Mrps6 protein_coding Interval_152103 chr7 129404899 129405092 + 0 NA Intergenic Intergenic -1905 ENSMUSG00000108713.1 ENSMUSG00000108713 ENSMUST00000206093 Gm33027 lincRNA Interval_40828 chr12 108712263 108713988 + 0 NA Intergenic Intergenic 8799 ENSMUSG00000093173.1 ENSMUSG00000093173 ENSMUST00000175432 Gm23872 miRNA Interval_50051 chr13 120277454 120277661 + 0 NA Intergenic Intergenic 14443 ENSMUSG00000095071.2 ENSMUSG00000095071 ENSMUST00000179905 AF067061 protein_coding Interval_126899 chr5 96883697 96883989 + 0 NA intron (ENSMUSG00000106319.1, intron 2 of 3) lincRNA-intron (ENSMUSG00000106319.1, intron 2 of 3) 4325 ENSMUSG00000104698.1 ENSMUSG00000104698 ENSMUST00000200288 Gm42602 TEC Interval_131963 chr5 141211792 141212073 + 0 NA Intergenic Intergenic 56523 ENSMUSG00000083382.1 ENSMUSG00000083382 ENSMUST00000118634 Gm6433 processed_pseudogene Interval_109509 chr3 143240320 143240550 + 0 NA Intergenic Intergenic -3093 ENSMUSG00000105923.4 ENSMUSG00000105923 ENSMUST00000198056 A830019L24Rik lincRNA Interval_78618 chr18 15336689 15337423 + 0 NA Intergenic Intergenic -14878 ENSMUSG00000117645.1 ENSMUSG00000117645 ENSMUST00000234122 A830021F12Rik lincRNA Interval_156839 chr8 60968684 60969500 + 0 NA intron (ENSMUSG00000004319.15, intron 1 of 11) protein_coding-intron (ENSMUSG00000004319.15, intron 2 of 13) 14152 ENSMUSG00000004319.15 ENSMUSG00000004319 ENSMUST00000145493 Clcn3 protein_coding Interval_99219 chr2 158177150 158179672 + 0 NA Intergenic Intergenic -13597 ENSMUSG00000078957.3 ENSMUSG00000078957 ENSMUST00000109506 1700060C20Rik antisense Interval_71377 chr17 22808204 22808603 + 0 NA promoter-TSS (ENSMUSG00000117333.1) processed_pseudogene-promoter-TSS (ENSMUSG00000117333.1) -667 ENSMUSG00000117333.1 ENSMUSG00000117333 ENSMUST00000233975 Gm16386 processed_pseudogene Interval_147395 chr7 66434390 66435095 + 0 NA Intergenic Intergenic -7144 ENSMUSG00000109114.1 ENSMUSG00000109114 ENSMUST00000208297 Gm44753 lincRNA Interval_72132 chr17 28212024 28212921 + 0 NA intron (ENSMUSG00000002257.8, intron 2 of 2) protein_coding-intron (ENSMUSG00000002257.8, intron 1 of 10) 4646 ENSMUSG00000002257.8 ENSMUSG00000002257 ENSMUST00000233534 Def6 protein_coding Interval_145549 chr7 35545122 35546451 + 0 NA Intergenic Intergenic 9408 ENSMUSG00000034875.5 ENSMUSG00000034875 ENSMUST00000123469 Nudt19 protein_coding Interval_104832 chr3 75647652 75648869 + 0 NA exon (ENSMUSG00000099370.1, exon 1 of 1) lincRNA-exon (ENSMUSG00000099370.1, exon 1 of 1) 397 ENSMUSG00000099370.1 ENSMUSG00000099370 ENSMUST00000191479 Platr10 lincRNA Interval_139388 chr6 99725804 99727062 + 0 NA promoter-TSS (ENSMUSG00000030069.15) protein_coding-promoter-TSS (ENSMUSG00000030069.15) -41 ENSMUSG00000030069.15 ENSMUSG00000030069 ENSMUST00000203738 Prok2 protein_coding Interval_50321 chr14 11828176 11829063 + 0 NA intron (ENSMUSG00000021745.14, intron 2 of 3) protein_coding-intron (ENSMUSG00000021745.14, intron 2 of 29) -38975 ENSMUSG00000114431.1 ENSMUSG00000114431 ENSMUST00000224051 Gm48601 TEC Interval_149868 chr7 102102394 102103233 + 0 NA promoter-TSS (ENSMUSG00000070424.12) protein_coding-promoter-TSS (ENSMUSG00000070424.12) 1070 ENSMUSG00000030996.8 ENSMUSG00000030996 ENSMUST00000209809 Art1 protein_coding Interval_173059 chrX 69024340 69024631 + 0 NA Intergenic Intergenic -74801 ENSMUSG00000065689.1 ENSMUSG00000065689 ENSMUST00000083755 n-R5s7 rRNA Interval_122093 chr5 16885446 16885871 + 0 NA Intergenic Intergenic 49744 ENSMUSG00000099854.1 ENSMUSG00000099854 ENSMUST00000186866 Gm28710 lincRNA Interval_95872 chr2 117619884 117620117 + 0 NA Intergenic Intergenic 183664 ENSMUSG00000101394.1 ENSMUSG00000101394 ENSMUST00000191321 Gm28183 lincRNA Interval_12517 chr1 194753330 194753572 + 0 NA intron (ENSMUSG00000026640.12, intron 8 of 31) protein_coding-intron (ENSMUSG00000026640.12, intron 8 of 31) 20744 ENSMUSG00000103776.1 ENSMUSG00000103776 ENSMUST00000194966 2900035J10Rik TEC Interval_77966 chr18 6193986 6194918 + 0 NA Intergenic Intergenic -19461 ENSMUSG00000091165.1 ENSMUSG00000091165 ENSMUST00000168187 Gm17036 antisense Interval_85591 chr19 28897559 28897766 + 0 NA intron (ENSMUSG00000064202.15, intron 6 of 8) protein_coding-intron (ENSMUSG00000024935.11, intron 6 of 11) 14217 ENSMUSG00000064202.15 ENSMUSG00000064202 ENSMUST00000161813 4430402I18Rik protein_coding Interval_22420 chr11 9904260 9904875 + 0 NA Intergenic Intergenic -166946 ENSMUSG00000081629.1 ENSMUSG00000081629 ENSMUST00000117907 Eif3s6-ps1 processed_pseudogene Interval_231 KZ289064.1 75120 75376 + 0 NA NA NA NA NA Interval_42641 chr13 17652373 17653430 + 0 NA intron (ENSMUSG00000055137.7, intron 5 of 13) protein_coding-intron (ENSMUSG00000055137.7, intron 5 of 13) 41836 ENSMUSG00000055137.7 ENSMUSG00000055137 ENSMUST00000221467 Sugct protein_coding Interval_96377 chr2 122054959 122055557 + 0 NA exon (ENSMUSG00000027236.8, exon 8 of 8) protein_coding-exon (ENSMUSG00000027236.8, exon 8 of 8) 26606 ENSMUSG00000027236.8 ENSMUSG00000027236 ENSMUST00000142747 Eif3j1 protein_coding Interval_163159 chr9 16005962 16006255 + 0 NA exon (ENSMUSG00000074505.6, exon 1 of 1) protein_coding-exon (ENSMUSG00000074505.6, exon 1 of 1) -131552 ENSMUSG00000050901.6 ENSMUSG00000050901 ENSMUST00000057920 Mtnr1b protein_coding Interval_45152 chr13 52790406 52790678 + 0 NA Intergenic Intergenic -33337 ENSMUSG00000113737.1 ENSMUSG00000113737 ENSMUST00000223209 BB123696 lincRNA Interval_146410 chr7 45746674 45748221 + 0 NA intron (ENSMUSG00000109602.1, intron 2 of 2) protein_coding-intron (ENSMUSG00000003271.17, intron 1 of 6) 5398 ENSMUSG00000109602.1 ENSMUSG00000109602 ENSMUST00000211176 Gm31597 antisense Interval_157351 chr8 69790401 69792054 + 0 NA promoter-TSS (ENSMUSG00000031862.11) protein_coding-promoter-TSS (ENSMUSG00000031862.11) -5726 ENSMUSG00000031862.11 ENSMUSG00000031862 ENSMUST00000238550 Atp13a1 protein_coding Interval_159057 chr8 89156505 89157486 + 0 NA Intergenic Intergenic -9937 ENSMUSG00000094790.2 ENSMUSG00000094790 ENSMUST00000177870 Gm6625 processed_pseudogene Interval_66482 chr16 34154617 34155453 + 0 NA intron (ENSMUSG00000061751.16, intron 30 of 30) protein_coding-intron (ENSMUSG00000061751.16, intron 33 of 59) -59007 ENSMUSG00000061751.16 ENSMUSG00000061751 ENSMUST00000132569 Kalrn protein_coding Interval_153078 chr7 141221364 141222338 + 0 NA promoter-TSS (ENSMUSG00000065551.1) miRNA-promoter-TSS (ENSMUSG00000065551.1) -358 ENSMUSG00000065551.1 ENSMUSG00000065551 ENSMUST00000083617 Mir210 miRNA Interval_1919 chr1 34547043 34547835 + 0 NA intron (ENSMUSG00000037529.13, intron 4 of 4) protein_coding-intron (ENSMUSG00000037529.13, intron 4 of 4) -8879 ENSMUSG00000101803.1 ENSMUSG00000101803 ENSMUST00000189108 Gm28419 processed_pseudogene Interval_131892 chr5 140638740 140638989 + 0 NA intron (ENSMUSG00000036565.7, intron 1 of 12) protein_coding-intron (ENSMUSG00000036565.7, intron 1 of 13) 10133 ENSMUSG00000036565.7 ENSMUSG00000036565 ENSMUST00000200302 Ttyh3 protein_coding Interval_26818 chr11 60830392 60831877 + 0 NA intron (ENSMUSG00000042569.13, intron 1 of 6) protein_coding-intron (ENSMUSG00000042569.13, intron 1 of 6) 455 ENSMUSG00000042569.13 ENSMUSG00000042569 ENSMUST00000108718 Dhrs7b protein_coding Interval_25715 chr11 51032972 51034635 + 0 NA Intergenic Intergenic -14306 ENSMUSG00000057890.5 ENSMUSG00000057890 ENSMUST00000073543 Olfr1375 protein_coding Interval_116396 chr4 111451111 111452486 + 0 NA intron (ENSMUSG00000028545.13, intron 4 of 5) protein_coding-intron (ENSMUSG00000028545.13, intron 4 of 5) 18601 ENSMUSG00000028545.13 ENSMUSG00000028545 ENSMUST00000123667 Bend5 protein_coding Interval_125270 chr5 65795324 65795826 + 0 NA intron (ENSMUSG00000037795.14, intron 6 of 13) protein_coding-intron (ENSMUSG00000037795.14, intron 6 of 17) 17561 ENSMUSG00000106682.1 ENSMUSG00000106682 ENSMUST00000200774 Gm42648 TEC Interval_131615 chr5 138827465 138827745 + 0 NA Intergenic Intergenic 7525 ENSMUSG00000094504.3 ENSMUSG00000094504 ENSMUST00000179205 Gm5294 protein_coding Interval_75872 chr17 72361433 72361656 + 0 NA intron (ENSMUSG00000055471.7, intron 2 of 4) protein_coding-intron (ENSMUSG00000055471.7, intron 2 of 28) 105286 ENSMUSG00000117046.1 ENSMUSG00000117046 ENSMUST00000233853 Gm19183 processed_pseudogene Interval_129628 chr5 121420146 121420487 + 0 NA intron (ENSMUSG00000042719.17, intron 8 of 20) protein_coding-intron (ENSMUSG00000042719.17, intron 9 of 23) 17658 ENSMUSG00000106115.1 ENSMUSG00000106115 ENSMUST00000198012 Gm43420 TEC Interval_120539 chr4 149219540 149220613 + 0 NA intron (ENSMUSG00000063077.15, intron 27 of 49) protein_coding-intron (ENSMUSG00000063077.15, intron 25 of 46) -53305 ENSMUSG00000028961.15 ENSMUSG00000028961 ENSMUST00000143944 Pgd protein_coding Interval_156216 chr8 46172049 46172322 + 0 NA intron (ENSMUSG00000031631.15, intron 1 of 3) protein_coding-intron (ENSMUSG00000031631.15, intron 2 of 4) 2629 ENSMUSG00000031631.15 ENSMUSG00000031631 ENSMUST00000164504 Cfap97 protein_coding Interval_85056 chr19 21862351 21863259 + 0 NA Intergenic Intergenic -29049 ENSMUSG00000118021.1 ENSMUSG00000118021 ENSMUST00000237423 Gm50130 antisense Interval_29960 chr11 88391526 88391997 + 0 NA intron (ENSMUSG00000069769.13, intron 4 of 5) protein_coding-intron (ENSMUSG00000069769.13, intron 9 of 13) 35470 ENSMUSG00000085246.1 ENSMUSG00000085246 ENSMUST00000143208 Gm15893 antisense Interval_129836 chr5 122659088 122659290 + 0 NA intron (ENSMUSG00000029468.17, intron 5 of 12) protein_coding-intron (ENSMUSG00000029468.17, intron 5 of 12) 8765 ENSMUSG00000029468.17 ENSMUSG00000029468 ENSMUST00000197042 P2rx7 protein_coding Interval_119195 chr4 136134493 136136148 + 0 NA Intergenic Intergenic -2176 ENSMUSG00000088614.1 ENSMUSG00000088614 ENSMUST00000157989 Gm26001 snRNA Interval_103370 chr3 40500095 40500697 + 0 NA Intergenic Intergenic 9378 ENSMUSG00000037884.6 ENSMUSG00000037884 ENSMUST00000202778 1700017G19Rik lincRNA Interval_86384 chr19 39811425 39811788 + 0 NA intron (ENSMUSG00000025004.16, intron 1 of 8) protein_coding-intron (ENSMUSG00000025004.16, intron 1 of 8) 1208 ENSMUSG00000025004.16 ENSMUSG00000025004 ENSMUST00000162507 Cyp2c40 protein_coding Interval_122837 chr5 25947447 25947838 + 0 NA TTS (ENSMUSG00000095550.2) protein_coding-TTS (ENSMUSG00000095550.2) -5261 ENSMUSG00000104824.1 ENSMUSG00000104824 ENSMUST00000196214 Gm21663 protein_coding Interval_102609 chr3 28287637 28287837 + 0 NA intron (ENSMUSG00000027692.16, intron 1 of 30) protein_coding-intron (ENSMUSG00000027692.16, intron 1 of 30) 24155 ENSMUSG00000027692.16 ENSMUSG00000027692 ENSMUST00000192205 Tnik protein_coding Interval_16900 chr10 69640784 69641140 + 0 NA intron (ENSMUSG00000069601.14, intron 2 of 2) protein_coding-intron (ENSMUSG00000069601.14, intron 1 of 16) -74601 ENSMUSG00000112729.1 ENSMUSG00000112729 ENSMUST00000220152 Gm46231 processed_pseudogene Interval_147814 chr7 73729750 73730911 + 0 NA Intergenic Intergenic 10694 ENSMUSG00000091890.2 ENSMUSG00000091890 ENSMUST00000169090 A830073O21Rik TEC Interval_39905 chr12 99562296 99564472 + 0 NA promoter-TSS (ENSMUSG00000097917.2) bidirectional_promoter_lncRNA-promoter-TSS (ENSMUSG00000097917.2) 152 ENSMUSG00000033713.12 ENSMUSG00000033713 ENSMUST00000221283 Foxn3 protein_coding Interval_99495 chr2 162574356 162574692 + 0 NA intron (ENSMUSG00000053141.16, intron 1 of 29) protein_coding-intron (ENSMUSG00000053141.16, intron 1 of 30) -86639 ENSMUSG00000054457.5 ENSMUSG00000054457 ENSMUST00000145985 9430021M05Rik processed_transcript Interval_113736 chr4 57919736 57921138 + 0 NA Intergenic Intergenic -4140 ENSMUSG00000052117.5 ENSMUSG00000052117 ENSMUST00000063816 D630039A03Rik protein_coding Interval_142055 chr6 136814228 136815049 + 0 NA exon (ENSMUSG00000030216.12, exon 12 of 12) protein_coding-exon (ENSMUSG00000030216.12, exon 12 of 12) -5955 ENSMUSG00000105415.1 ENSMUSG00000105415 ENSMUST00000198368 Gm44364 miRNA Interval_82377 chr18 73437317 73437922 + 0 NA Intergenic Intergenic 95931 ENSMUSG00000065922.1 ENSMUSG00000065922 ENSMUST00000083988 n-R5-8s1 rRNA Interval_16506 chr10 63258561 63259573 + 0 NA intron (ENSMUSG00000020064.9, intron 2 of 4) protein_coding-intron (ENSMUSG00000020064.9, intron 3 of 24) 8135 ENSMUSG00000112411.1 ENSMUSG00000112411 ENSMUST00000218100 Gm19337 TEC Interval_61599 chr15 82880194 82880613 + 0 NA intron (ENSMUSG00000041852.15, intron 1 of 1) protein_coding-intron (ENSMUSG00000041852.15, intron 1 of 4) -18677 ENSMUSG00000100199.1 ENSMUSG00000100199 ENSMUST00000186291 Gm20324 antisense Interval_26608 chr11 59191271 59192479 + 0 NA promoter-TSS (ENSMUSG00000020444.19) protein_coding-promoter-TSS (ENSMUSG00000020444.19) 337 ENSMUSG00000020444.19 ENSMUSG00000020444 ENSMUST00000172714 Guk1 protein_coding Interval_12157 chr1 190219457 190219665 + 0 NA Intergenic Intergenic -48881 ENSMUSG00000010175.13 ENSMUSG00000010175 ENSMUST00000177288 Prox1 protein_coding Interval_148143 chr7 79464689 79466996 + 0 NA promoter-TSS (ENSMUSG00000108599.1) TEC-promoter-TSS (ENSMUSG00000108599.1) -567 ENSMUSG00000108599.1 ENSMUSG00000108599 ENSMUST00000205285 Gm10616 TEC Interval_18231 chr10 83985095 83985450 + 0 NA Intergenic Intergenic 19588 ENSMUSG00000111699.1 ENSMUSG00000111699 ENSMUST00000215772 C230099D08Rik lincRNA Interval_97148 chr2 131765753 131765949 + 0 NA Intergenic Intergenic -44013 ENSMUSG00000086831.1 ENSMUSG00000086831 ENSMUST00000138080 Gm14280 antisense Interval_43979 chr13 38662592 38663310 + 0 NA Intergenic Intergenic -3941 ENSMUSG00000001707.8 ENSMUSG00000001707 ENSMUST00000224487 Eef1e1 protein_coding Interval_94209 chr2 85123019 85124266 + 0 NA Intergenic Intergenic -13750 ENSMUSG00000044338.9 ENSMUSG00000044338 ENSMUST00000184728 Aplnr protein_coding Interval_147114 chr7 63335324 63335637 + 0 NA Intergenic Intergenic 109049 ENSMUSG00000097682.1 ENSMUSG00000097682 ENSMUST00000181327 4930554H23Rik lincRNA Interval_165927 chr9 54734079 54734706 + 0 NA promoter-TSS (ENSMUSG00000061559.15) protein_coding-promoter-TSS (ENSMUSG00000061559.15) -10035 ENSMUSG00000061559.15 ENSMUSG00000061559 ENSMUST00000127451 Wdr61 protein_coding Interval_128395 chr5 113105318 113105545 + 0 NA intron (ENSMUSG00000051339.10, intron 6 of 12) protein_coding-intron (ENSMUSG00000051339.10, intron 1 of 7) 4915 ENSMUSG00000106541.1 ENSMUSG00000106541 ENSMUST00000197597 Gm43246 TEC Interval_70035 chr17 4865911 4866748 + 0 NA intron (ENSMUSG00000116813.1, intron 2 of 2) lincRNA-intron (ENSMUSG00000116813.1, intron 2 of 2) -14297 ENSMUSG00000116620.1 ENSMUSG00000116620 ENSMUST00000231980 Gm4828 processed_pseudogene Interval_72691 chr17 31577397 31578296 + 0 NA intron (ENSMUSG00000006705.13, intron 1 of 10) protein_coding-intron (ENSMUSG00000006705.13, intron 1 of 10) -10631 ENSMUSG00000006705.13 ENSMUSG00000006705 ENSMUST00000176513 Pknox1 protein_coding Interval_100317 chr2 168343649 168343922 + 0 NA Intergenic Intergenic 8085 ENSMUSG00000064961.1 ENSMUSG00000064961 ENSMUST00000083027 Gm22704 snoRNA Interval_41073 chr12 110978404 110979566 + 0 NA promoter-TSS (ENSMUSG00000037904.14) protein_coding-promoter-TSS (ENSMUSG00000037904.14) -730 ENSMUSG00000037904.14 ENSMUSG00000037904 ENSMUST00000144882 Ankrd9 protein_coding Interval_63712 chr15 102986977 102987948 + 0 NA intron (ENSMUSG00000022485.3, intron 1 of 1) protein_coding-intron (ENSMUSG00000022485.3, intron 1 of 1) -4427 ENSMUSG00000001657.7 ENSMUSG00000001657 ENSMUST00000189484 Hoxc8 protein_coding Interval_47394 chr13 83193725 83194010 + 0 NA intron (ENSMUSG00000114372.1, intron 3 of 3) lincRNA-intron (ENSMUSG00000114372.1, intron 3 of 3) -4158 ENSMUSG00000114735.1 ENSMUSG00000114735 ENSMUST00000224835 Gm48156 processed_pseudogene Interval_13038 chr10 9801419 9801950 + 0 NA intron (ENSMUSG00000019790.17, intron 16 of 25) protein_coding-intron (ENSMUSG00000019790.17, intron 16 of 27) 17901 ENSMUSG00000019790.17 ENSMUSG00000019790 ENSMUST00000219200 Stxbp5 protein_coding Interval_5081 chr1 84828279 84829404 + 0 NA intron (ENSMUSG00000026219.14, intron 1 of 40) protein_coding-intron (ENSMUSG00000026219.14, intron 1 of 40) -4158 ENSMUSG00000104503.1 ENSMUSG00000104503 ENSMUST00000192396 Gm37738 TEC Interval_74397 chr17 49908415 49908671 + 0 NA intron (ENSMUSG00000023999.14, intron 22 of 22) protein_coding-intron (ENSMUSG00000023999.14, intron 7 of 7) -12576 ENSMUSG00000090227.1 ENSMUSG00000090227 ENSMUST00000159471 Gm16554 antisense Interval_137508 chr6 72813371 72814235 + 0 NA Intergenic Intergenic -61889 ENSMUSG00000104501.1 ENSMUSG00000104501 ENSMUST00000193564 Gm37736 TEC Interval_164681 chr9 40556580 40557361 + 0 NA intron (ENSMUSG00000111858.1, intron 4 of 4) lincRNA-intron (ENSMUSG00000111858.1, intron 2 of 2) 3959 ENSMUSG00000111858.1 ENSMUSG00000111858 ENSMUST00000214616 Gm48277 lincRNA Interval_48351 chr13 98431880 98432086 + 0 NA intron (ENSMUSG00000099446.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000099446.1, intron 1 of 2) 3082 ENSMUSG00000099446.1 ENSMUSG00000099446 ENSMUST00000186644 2310005E17Rik lincRNA Interval_31991 chr11 104332432 104332795 + 0 NA TTS (ENSMUSG00000018412.16) protein_coding-TTS (ENSMUSG00000018412.16) -73252 ENSMUSG00000085134.1 ENSMUSG00000085134 ENSMUST00000137561 Gm11659 antisense Interval_55441 chr14 87346572 87347080 + 0 NA TTS (ENSMUSG00000088536.1) snoRNA-TTS (ENSMUSG00000088536.1) 581 ENSMUSG00000088536.1 ENSMUSG00000088536 ENSMUST00000157911 Gm23278 snoRNA Interval_101639 chr3 8441867 8442932 + 0 NA Intergenic Intergenic 13241 ENSMUSG00000065203.1 ENSMUSG00000065203 ENSMUST00000083269 Gm24614 snRNA Interval_146714 chr7 49639044 49640306 + 0 NA Intergenic Intergenic -2826 ENSMUSG00000030507.6 ENSMUSG00000030507 ENSMUST00000032717 Dbx1 protein_coding Interval_60439 chr15 73756882 73757490 + 0 NA TTS (ENSMUSG00000059895.13) protein_coding-TTS (ENSMUSG00000059895.13) 9468 ENSMUSG00000059895.13 ENSMUSG00000059895 ENSMUST00000053232 Ptp4a3 protein_coding Interval_94290 chr2 87525887 87526498 + 0 NA promoter-TSS (ENSMUSG00000082908.4) processed_pseudogene-promoter-TSS (ENSMUSG00000082908.4) 47 ENSMUSG00000082908.4 ENSMUSG00000082908 ENSMUST00000119272 Gm13736 processed_pseudogene Interval_107709 chr3 111514535 111514822 + 0 NA Intergenic Intergenic -191821 ENSMUSG00000106100.1 ENSMUSG00000106100 ENSMUST00000199881 Gm9314 processed_pseudogene Interval_17437 chr10 76722994 76723338 + 0 NA intron (ENSMUSG00000001119.7, intron 3 of 34) protein_coding-intron (ENSMUSG00000001119.7, intron 3 of 34) -3930 ENSMUSG00000001119.7 ENSMUSG00000001119 ENSMUST00000137599 Col6a1 protein_coding Interval_65349 chr16 21768248 21768872 + 0 NA intron (ENSMUSG00000022853.7, intron 5 of 6) protein_coding-intron (ENSMUSG00000022853.7, intron 5 of 6) -5553 ENSMUSG00000088758.1 ENSMUSG00000088758 ENSMUST00000158133 Gm24898 snRNA Interval_101729 chr3 9218570 9218960 + 0 NA Intergenic Intergenic -31837 ENSMUSG00000069114.8 ENSMUSG00000069114 ENSMUST00000155203 Zbtb10 protein_coding Interval_160756 chr8 111968273 111969417 + 0 NA intron (ENSMUSG00000031949.17, intron 9 of 9) protein_coding-intron (ENSMUSG00000031949.17, intron 9 of 9) 23457 ENSMUSG00000031949.17 ENSMUSG00000031949 ENSMUST00000120457 Adat1 protein_coding Interval_159410 chr8 94399588 94400365 + 0 NA Intergenic Intergenic -5235 ENSMUSG00000094257.2 ENSMUSG00000094257 ENSMUST00000178107 Ap3s1-ps2 processed_pseudogene Interval_8457 chr1 139527601 139528297 + 0 NA Intergenic Intergenic 11555 ENSMUSG00000026368.6 ENSMUSG00000026368 ENSMUST00000141842 F13b protein_coding Interval_146941 chr7 56081633 56082557 + 0 NA intron (ENSMUSG00000030451.16, intron 3 of 18) protein_coding-intron (ENSMUSG00000030451.16, intron 4 of 92) 14111 ENSMUSG00000030451.16 ENSMUSG00000030451 ENSMUST00000205678 Herc2 protein_coding Interval_59484 chr15 54055601 54055872 + 0 NA Intergenic Intergenic -19754 ENSMUSG00000097938.1 ENSMUSG00000097938 ENSMUST00000182320 Gm26933 processed_pseudogene Interval_65051 chr16 18714842 18715995 + 0 NA Intergenic Intergenic -33202 ENSMUSG00000116825.1 ENSMUSG00000116825 ENSMUST00000231787 Rps2-ps7 processed_pseudogene Interval_94815 chr2 94667482 94667673 + 0 NA Intergenic Intergenic 45619 ENSMUSG00000077678.1 ENSMUSG00000077678 ENSMUST00000104490 Gm24318 snoRNA Interval_154768 chr8 23221105 23221399 + 0 NA Intergenic Intergenic 12740 ENSMUSG00000103925.1 ENSMUSG00000103925 ENSMUST00000192979 B230112G18Rik TEC Interval_79552 chr18 33734669 33734898 + 0 NA Intergenic Intergenic -60156 ENSMUSG00000087590.2 ENSMUSG00000087590 ENSMUST00000179138 Epb41l4aos lincRNA Interval_111435 chr4 21628677 21630130 + 0 NA Intergenic Intergenic 3023 ENSMUSG00000083654.1 ENSMUSG00000083654 ENSMUST00000118187 Gm11875 processed_pseudogene Interval_66787 chr16 37633884 37634819 + 0 NA Intergenic Intergenic 20015 ENSMUSG00000022820.4 ENSMUSG00000022820 ENSMUST00000231881 Ndufb4 protein_coding Interval_76165 chr17 75815962 75816469 + 0 NA Intergenic Intergenic -17622 ENSMUSG00000117587.1 ENSMUSG00000117587 ENSMUST00000235034 Gm50099 processed_pseudogene Interval_64753 chr16 15119982 15120223 + 0 NA Intergenic Intergenic 97226 ENSMUSG00000069315.2 ENSMUSG00000069315 ENSMUST00000091759 Gm7731 processed_pseudogene Interval_125576 chr5 72133752 72134436 + 0 NA intron (ENSMUSG00000029212.11, intron 8 of 8) protein_coding-intron (ENSMUSG00000029212.11, intron 8 of 8) 34070 ENSMUSG00000029213.11 ENSMUSG00000029213 ENSMUST00000196241 Commd8 protein_coding Interval_41724 chr12 118329229 118329791 + 0 NA Intergenic Intergenic -28142 ENSMUSG00000025323.10 ENSMUSG00000025323 ENSMUST00000221844 Sp4 protein_coding Interval_146366 chr7 45549059 45550347 + 0 NA promoter-TSS (ENSMUSG00000040428.19) protein_coding-promoter-TSS (ENSMUSG00000040428.19) 1912 ENSMUSG00000110144.1 ENSMUSG00000110144 ENSMUST00000210460 Gm45564 antisense Interval_143438 chr7 6793045 6794094 + 0 NA intron (ENSMUSG00000051527.11, intron 2 of 7) protein_coding-intron (ENSMUSG00000051527.11, intron 2 of 7) -10018 ENSMUSG00000092815.1 ENSMUSG00000092815 ENSMUST00000175074 Mir3099 miRNA Interval_165685 chr9 50939599 50939823 + 0 NA intron (ENSMUSG00000037112.16, intron 3 of 3) protein_coding-intron (ENSMUSG00000037112.16, intron 3 of 15) 51761 ENSMUSG00000088708.1 ENSMUSG00000088708 ENSMUST00000158083 Gm25558 snRNA Interval_157910 chr8 75573555 75574398 + 0 NA intron (ENSMUSG00000031620.16, intron 3 of 13) protein_coding-intron (ENSMUSG00000031620.16, intron 2 of 12) 22209 ENSMUSG00000103054.1 ENSMUSG00000103054 ENSMUST00000192721 Gm38270 TEC Interval_97559 chr2 139828887 139829321 + 0 NA Intergenic Intergenic -34193 ENSMUSG00000084207.1 ENSMUSG00000084207 ENSMUST00000120773 Gm14070 processed_pseudogene Interval_13205 chr10 13018372 13018710 + 0 NA Intergenic Intergenic 13198 ENSMUSG00000078348.4 ENSMUSG00000078348 ENSMUST00000105139 Sf3b5 protein_coding Interval_64289 chr16 10264036 10264944 + 0 NA Intergenic Intergenic -9260 ENSMUSG00000093251.1 ENSMUSG00000093251 ENSMUST00000175510 Gm22932 miRNA Interval_98065 chr2 147361705 147363581 + 0 NA promoter-TSS (ENSMUSG00000087521.2) antisense-promoter-TSS (ENSMUSG00000087521.2) -132 ENSMUSG00000087521.2 ENSMUSG00000087521 ENSMUST00000140987 AI646519 antisense Interval_110117 chr3 153442956 153443349 + 0 NA intron (ENSMUSG00000052544.9, intron 1 of 2) protein_coding-intron (ENSMUSG00000052544.9, intron 1 of 2) 31502 ENSMUSG00000104964.1 ENSMUSG00000104964 ENSMUST00000196286 4930597L12Rik TEC Interval_132512 chr5 145652729 145653102 + 0 NA Intergenic Intergenic -18922 ENSMUSG00000106040.1 ENSMUSG00000106040 ENSMUST00000196626 Cyp3a63-ps unprocessed_pseudogene Interval_91295 chr2 37503372 37503685 + 0 NA intron (ENSMUSG00000035437.15, intron 3 of 3) protein_coding-intron (ENSMUSG00000035437.15, intron 12 of 25) 12663 ENSMUSG00000035437.15 ENSMUSG00000035437 ENSMUST00000159092 Rabgap1 protein_coding Interval_39094 chr12 85003134 85004351 + 0 NA intron (ENSMUSG00000021244.15, intron 1 of 19) protein_coding-intron (ENSMUSG00000021244.15, intron 1 of 20) 23532 ENSMUSG00000021243.14 ENSMUSG00000021243 ENSMUST00000172241 Fcf1 protein_coding Interval_41237 chr12 112047029 112047302 + 0 NA intron (ENSMUSG00000054003.13, intron 28 of 31) protein_coding-intron (ENSMUSG00000054003.13, intron 32 of 35) 34099 ENSMUSG00000054003.13 ENSMUSG00000054003 ENSMUST00000193630 Tdrd9 protein_coding Interval_74161 chr17 46848702 46848896 + 0 NA intron (ENSMUSG00000036568.7, intron 1 of 4) protein_coding-intron (ENSMUSG00000036568.7, intron 1 of 4) -16485 ENSMUSG00000036568.7 ENSMUSG00000036568 ENSMUST00000233455 Bicral protein_coding Interval_50730 chr14 18665847 18667037 + 0 NA intron (ENSMUSG00000058317.12, intron 4 of 4) protein_coding-intron (ENSMUSG00000058317.12, intron 2 of 4) -121310 ENSMUSG00000114529.1 ENSMUSG00000114529 ENSMUST00000224515 Gm4939 processed_pseudogene Interval_163504 chr9 21759874 21761111 + 0 NA promoter-TSS (ENSMUSG00000074476.6) protein_coding-promoter-TSS (ENSMUSG00000074476.6) -210 ENSMUSG00000074476.6 ENSMUSG00000074476 ENSMUST00000214149 Spc24 protein_coding Interval_85488 chr19 27400613 27402396 + 0 NA intron (ENSMUSG00000041360.8, intron 13 of 17) protein_coding-intron (ENSMUSG00000041360.8, intron 13 of 17) 18595 ENSMUSG00000041360.8 ENSMUSG00000041360 ENSMUST00000236702 Pum3 protein_coding Interval_128027 chr5 110353759 110355262 + 0 NA exon (ENSMUSG00000072754.9, exon 2 of 4) protein_coding-exon (ENSMUSG00000072754.9, exon 2 of 4) 352 ENSMUSG00000072754.9 ENSMUSG00000072754 ENSMUST00000190963 Lrcol1 protein_coding Interval_33420 chr11 116463748 116464364 + 0 NA intron (ENSMUSG00000070331.14, intron 2 of 19) protein_coding-intron (ENSMUSG00000070331.14, intron 2 of 19) 2185 ENSMUSG00000070331.14 ENSMUSG00000070331 ENSMUST00000140697 Qrich2 protein_coding Interval_2279 chr1 37643859 37644048 + 0 NA intron (ENSMUSG00000026090.16, intron 2 of 9) protein_coding-intron (ENSMUSG00000026090.16, intron 3 of 3) -16769 ENSMUSG00000104365.1 ENSMUSG00000104365 ENSMUST00000192005 4930470B04Rik TEC Interval_127285 chr5 102090753 102091365 + 0 NA Intergenic Intergenic 20841 ENSMUSG00000106492.1 ENSMUSG00000106492 ENSMUST00000196325 Gm29707 lincRNA Interval_88713 chr2 9939235 9940041 + 0 NA intron (ENSMUSG00000025782.12, intron 2 of 4) protein_coding-intron (ENSMUSG00000025782.12, intron 4 of 6) 2113 ENSMUSG00000025782.12 ENSMUSG00000025782 ENSMUST00000114907 Taf3 protein_coding Interval_26207 chr11 55086738 55088093 + 0 NA Intergenic Intergenic -9284 ENSMUSG00000049588.13 ENSMUSG00000049588 ENSMUST00000108880 Ccdc69 protein_coding Interval_118699 chr4 133250587 133251763 + 0 NA intron (ENSMUSG00000028862.6, intron 1 of 6) protein_coding-intron (ENSMUSG00000028862.6, intron 23 of 28) 326 ENSMUSG00000028862.6 ENSMUSG00000028862 ENSMUST00000134895 Map3k6 protein_coding Interval_101821 chr3 9708613 9709377 + 0 NA intron (ENSMUSG00000027508.15, intron 3 of 8) protein_coding-intron (ENSMUSG00000027508.15, intron 2 of 7) -48612 ENSMUSG00000089794.1 ENSMUSG00000089794 ENSMUST00000160368 Gm16337 lincRNA Interval_98877 chr2 155728755 155730003 + 0 NA promoter-TSS (ENSMUSG00000038312.10) protein_coding-promoter-TSS (ENSMUSG00000038312.10) 6487 ENSMUSG00000092123.1 ENSMUSG00000092123 ENSMUST00000166589 Gm17581 protein_coding Interval_19429 chr10 99184319 99184567 + 0 NA intron (ENSMUSG00000089994.1, intron 1 of 3) protein_coding-intron (ENSMUSG00000019952.15, intron 10 of 11) 167 ENSMUSG00000089994.1 ENSMUSG00000089994 ENSMUST00000160182 Gm16239 antisense Interval_32510 chr11 108010375 108010953 + 0 NA intron (ENSMUSG00000050965.14, intron 1 of 5) protein_coding-intron (ENSMUSG00000050965.14, intron 8 of 16) 2141 ENSMUSG00000050965.14 ENSMUSG00000050965 ENSMUST00000134725 Prkca protein_coding Interval_106475 chr3 96580289 96580590 + 0 NA promoter-TSS (ENSMUSG00000028104.14) protein_coding-promoter-TSS (ENSMUSG00000028104.14) 3455 ENSMUSG00000087610.1 ENSMUSG00000087610 ENSMUST00000148290 Gm16253 protein_coding Interval_33026 chr11 113750167 113752714 + 0 NA promoter-TSS (ENSMUSG00000041598.7) protein_coding-promoter-TSS (ENSMUSG00000041598.7) -286 ENSMUSG00000041598.7 ENSMUSG00000041598 ENSMUST00000153453 Cdc42ep4 protein_coding Interval_127884 chr5 108570384 108570631 + 0 NA TTS (ENSMUSG00000062234.14) protein_coding-TTS (ENSMUSG00000062234.14) -17153 ENSMUSG00000105590.1 ENSMUSG00000105590 ENSMUST00000196046 Gm43364 TEC Interval_86039 chr19 35339044 35339430 + 0 NA Intergenic Intergenic -62715 ENSMUSG00000093373.1 ENSMUSG00000093373 ENSMUST00000175632 Gm23075 miRNA Interval_162555 chr9 4267009 4267914 + 0 NA Intergenic Intergenic 3776 ENSMUSG00000080511.1 ENSMUSG00000080511 ENSMUST00000116861 Gm22195 miRNA Interval_52893 chr14 51892582 51894902 + 0 NA TTS (ENSMUSG00000004561.14) protein_coding-TTS (ENSMUSG00000004561.14) 853 ENSMUSG00000072572.9 ENSMUSG00000072572 ENSMUST00000047726 Slc39a2 protein_coding Interval_136318 chr6 52971978 52972978 + 0 NA intron (ENSMUSG00000063568.11, intron 1 of 4) protein_coding-intron (ENSMUSG00000063568.11, intron 1 of 4) 38054 ENSMUSG00000089209.1 ENSMUSG00000089209 ENSMUST00000158584 Gm26215 scaRNA Interval_80275 chr18 38697717 38698581 + 0 NA intron (ENSMUSG00000118193.1, intron 1 of 5) lincRNA-intron (ENSMUSG00000118257.1, intron 3 of 3) -16251 ENSMUSG00000099488.1 ENSMUSG00000099488 ENSMUST00000190667 Gm19774 processed_pseudogene Interval_18672 chr10 89044690 89046564 + 0 NA intron (ENSMUSG00000035189.17, intron 7 of 26) protein_coding-intron (ENSMUSG00000035189.17, intron 8 of 13) 159635 ENSMUSG00000020062.7 ENSMUSG00000020062 ENSMUST00000020255 Slc5a8 protein_coding Interval_32130 chr11 105409096 105409579 + 0 NA promoter-TSS (ENSMUSG00000078627.9) protein_coding-promoter-TSS (ENSMUSG00000078627.9) -630 ENSMUSG00000078627.9 ENSMUSG00000078627 ENSMUST00000100332 Marchf10 protein_coding Interval_9449 chr1 157251014 157251403 + 0 NA intron (ENSMUSG00000070565.11, intron 3 of 17) protein_coding-intron (ENSMUSG00000070565.11, intron 3 of 17) -20017 ENSMUSG00000070565.11 ENSMUSG00000070565 ENSMUST00000143080 Rasal2 protein_coding Interval_46017 chr13 60139610 60140053 + 0 NA Intergenic Intergenic 30716 ENSMUSG00000114531.1 ENSMUSG00000114531 ENSMUST00000225586 A530065N20Rik lincRNA Interval_32112 chr11 105305941 105307083 + 0 NA intron (ENSMUSG00000020695.14, intron 1 of 2) protein_coding-intron (ENSMUSG00000020695.14, intron 1 of 19) -34320 ENSMUSG00000020695.14 ENSMUSG00000020695 ENSMUST00000151135 Mrc2 protein_coding Interval_63019 chr15 98674821 98675406 + 0 NA intron (ENSMUSG00000054855.13, intron 2 of 3) protein_coding-intron (ENSMUSG00000054855.13, intron 2 of 4) 2345 ENSMUSG00000054855.13 ENSMUSG00000054855 ENSMUST00000120997 Rnd1 protein_coding Interval_125264 chr5 65752617 65752825 + 0 NA Intergenic Intergenic 11145 ENSMUSG00000106978.1 ENSMUSG00000106978 ENSMUST00000202069 N4bp2os processed_transcript Interval_105438 chr3 86335235 86336842 + 0 NA intron (ENSMUSG00000028080.16, intron 21 of 38) protein_coding-intron (ENSMUSG00000028080.16, intron 22 of 56) -28419 ENSMUSG00000065764.1 ENSMUSG00000065764 ENSMUST00000083830 Gm23850 snRNA Interval_159509 chr8 95167371 95167606 + 0 NA intron (ENSMUSG00000031788.14, intron 1 of 4) protein_coding-intron (ENSMUSG00000031788.14, intron 1 of 4) 29178 ENSMUSG00000110475.1 ENSMUSG00000110475 ENSMUST00000212925 Gm31036 antisense Interval_143606 chr7 13087177 13087819 + 0 NA exon (ENSMUSG00000070817.3, exon 3 of 4) protein_coding-exon (ENSMUSG00000070817.3, exon 3 of 4) -5674 ENSMUSG00000110268.1 ENSMUSG00000110268 ENSMUST00000210729 Gm45436 lincRNA Interval_17383 chr10 76229429 76230684 + 0 NA intron (ENSMUSG00000020230.15, intron 2 of 5) protein_coding-intron (ENSMUSG00000020230.15, intron 2 of 10) -12301 ENSMUSG00000020230.15 ENSMUSG00000020230 ENSMUST00000217726 Prmt2 protein_coding Interval_95105 chr2 103942728 103943349 + 0 NA Intergenic Intergenic -14957 ENSMUSG00000032698.15 ENSMUSG00000032698 ENSMUST00000133210 Lmo2 protein_coding Interval_132067 chr5 142584504 142586050 + 0 NA intron (ENSMUSG00000039533.8, intron 1 of 1) protein_coding-intron (ENSMUSG00000039533.8, intron 1 of 6) 23523 ENSMUSG00000039533.8 ENSMUSG00000039533 ENSMUST00000196972 Mmd2 protein_coding Interval_1429 chr1 23213300 23213590 + 0 NA intron (ENSMUSG00000101227.1, intron 2 of 3) sense_overlapping-intron (ENSMUSG00000101227.1, intron 2 of 3) 22228 ENSMUSG00000101227.1 ENSMUSG00000101227 ENSMUST00000191045 Gm29506 sense_overlapping Interval_69887 chr16 97905297 97905621 + 0 NA intron (ENSMUSG00000045975.8, intron 2 of 11) protein_coding-intron (ENSMUSG00000045975.8, intron 2 of 13) 17147 ENSMUSG00000045975.8 ENSMUSG00000045975 ENSMUST00000231953 C2cd2 protein_coding Interval_91939 chr2 51801863 51802281 + 0 NA Intergenic Intergenic 16497 ENSMUSG00000081484.1 ENSMUSG00000081484 ENSMUST00000119772 Gm13492 processed_pseudogene Interval_139839 chr6 110647172 110647473 + 0 NA intron (ENSMUSG00000056755.13, intron 1 of 9) protein_coding-intron (ENSMUSG00000056755.13, intron 1 of 10) -1406 ENSMUSG00000092448.1 ENSMUSG00000092448 ENSMUST00000173609 Gm20387 antisense Interval_72476 chr17 30053226 30053721 + 0 NA intron (ENSMUSG00000044477.12, intron 1 of 4) protein_coding-intron (ENSMUSG00000044477.12, intron 1 of 4) -48782 ENSMUSG00000117371.1 ENSMUSG00000117371 ENSMUST00000233996 Gm50019 bidirectional_promoter_lncRNA Interval_43860 chr13 37666244 37667219 + 0 NA promoter-TSS (ENSMUSG00000114828.1) lincRNA-promoter-TSS (ENSMUSG00000114828.1) -189 ENSMUSG00000114828.1 ENSMUSG00000114828 ENSMUST00000224151 AI463229 lincRNA Interval_49232 chr13 109679287 109679484 + 0 NA intron (ENSMUSG00000021699.17, intron 1 of 14) protein_coding-intron (ENSMUSG00000021699.17, intron 1 of 14) -224424 ENSMUSG00000084651.1 ENSMUSG00000084651 ENSMUST00000122702 Mir1904 miRNA Interval_108022 chr3 120059782 120060266 + 0 NA Intergenic Intergenic 91293 ENSMUSG00000104726.1 ENSMUSG00000104726 ENSMUST00000195974 Gm18384 processed_pseudogene Interval_53994 chr14 64173481 64174088 + 0 NA intron (ENSMUSG00000054733.9, intron 5 of 5) protein_coding-intron (ENSMUSG00000054733.9, intron 10 of 10) 57470 ENSMUSG00000114284.1 ENSMUSG00000114284 ENSMUST00000225122 9630015K15Rik antisense Interval_60651 chr15 75929118 75930134 + 0 NA promoter-TSS (ENSMUSG00000022570.7) protein_coding-promoter-TSS (ENSMUSG00000022570.7) 118 ENSMUSG00000022570.7 ENSMUSG00000022570 ENSMUST00000230884 Tsta3 protein_coding Interval_56006 chr14 104037141 104037455 + 0 NA Intergenic Intergenic -10156 ENSMUSG00000115727.1 ENSMUSG00000115727 ENSMUST00000227414 4930432J09Rik lincRNA Interval_21774 chr11 4270860 4271872 + 0 NA exon (ENSMUSG00000034394.14, exon 3 of 3) protein_coding-exon (ENSMUSG00000034394.14, exon 3 of 3) -2723 ENSMUSG00000085559.1 ENSMUSG00000085559 ENSMUST00000148655 Gm11959 lincRNA Interval_161869 chr8 123332258 123333248 + 0 NA promoter-TSS (ENSMUSG00000010154.7) protein_coding-promoter-TSS (ENSMUSG00000010154.7) -17498 ENSMUSG00000010154.7 ENSMUSG00000010154 ENSMUST00000212404 Spire2 protein_coding Interval_76882 chr17 84713465 84715626 + 0 NA intron (ENSMUSG00000024120.12, intron 5 of 6) protein_coding-intron (ENSMUSG00000024120.12, intron 31 of 37) 16639 ENSMUSG00000024120.12 ENSMUSG00000024120 ENSMUST00000159222 Lrpprc protein_coding Interval_62047 chr15 86081354 86082192 + 0 NA intron (ENSMUSG00000035900.18, intron 1 of 1) protein_coding-intron (ENSMUSG00000035900.18, intron 1 of 18) 7040 ENSMUSG00000035900.18 ENSMUSG00000035900 ENSMUST00000147286 Gramd4 protein_coding Interval_60026 chr15 64059105 64060890 + 0 NA intron (ENSMUSG00000022378.14, intron 1 of 12) protein_coding-intron (ENSMUSG00000022378.14, intron 1 of 11) 481 ENSMUSG00000022378.14 ENSMUSG00000022378 ENSMUST00000226129 Fam49b protein_coding Interval_156906 chr8 61584662 61584931 + 0 NA intron (ENSMUSG00000058056.16, intron 10 of 21) protein_coding-intron (ENSMUSG00000058056.16, intron 10 of 19) -68896 ENSMUSG00000058056.16 ENSMUSG00000058056 ENSMUST00000123523 Palld protein_coding Interval_87805 chr19 56029054 56030240 + 0 NA Intergenic Intergenic -5449 ENSMUSG00000117827.1 ENSMUSG00000117827 ENSMUST00000236136 D730002M21Rik lincRNA Interval_26940 chr11 61727635 61728079 + 0 NA Intergenic Intergenic -7911 ENSMUSG00000042371.12 ENSMUSG00000042371 ENSMUST00000148584 Slc5a10 protein_coding Interval_18002 chr10 81308381 81308967 + 0 NA intron (ENSMUSG00000034902.17, intron 6 of 16) protein_coding-intron (ENSMUSG00000034902.17, intron 6 of 18) -5757 ENSMUSG00000090230.1 ENSMUSG00000090230 ENSMUST00000163009 Gm16315 antisense Interval_105648 chr3 88363830 88364947 + 0 NA promoter-TSS (ENSMUSG00000041423.16) protein_coding-promoter-TSS (ENSMUSG00000041423.16) -203 ENSMUSG00000041423.16 ENSMUSG00000041423 ENSMUST00000147818 Paqr6 protein_coding Interval_129217 chr5 118260914 118261125 + 0 NA intron (ENSMUSG00000032840.7, intron 4 of 4) protein_coding-intron (ENSMUSG00000032840.7, intron 4 of 4) -5430 ENSMUSG00000095477.1 ENSMUSG00000095477 ENSMUST00000104098 Gm25076 snoRNA Interval_89279 chr2 18766571 18767552 + 0 NA Intergenic Intergenic -6199 ENSMUSG00000092353.1 ENSMUSG00000092353 ENSMUST00000174811 Gm20539 lincRNA Interval_134247 chr6 23667736 23667922 + 0 NA intron (ENSMUSG00000017978.18, intron 3 of 29) protein_coding-intron (ENSMUSG00000017978.18, intron 2 of 29) -12693 ENSMUSG00000078179.1 ENSMUSG00000078179 ENSMUST00000104979 Rnf148 protein_coding Interval_172489 chrX 21293860 21294100 + 0 NA Intergenic Intergenic 40747 ENSMUSG00000087586.1 ENSMUSG00000087586 ENSMUST00000123014 Gm6938 lincRNA Interval_85686 chr19 29667114 29667765 + 0 NA Intergenic Intergenic -21412 ENSMUSG00000046324.12 ENSMUSG00000046324 ENSMUST00000160907 Ermp1 protein_coding Interval_156651 chr8 56468225 56468936 + 0 NA intron (ENSMUSG00000110310.1, intron 2 of 2) lincRNA-intron (ENSMUSG00000110310.1, intron 2 of 2) 15065 ENSMUSG00000110309.1 ENSMUSG00000110309 ENSMUST00000209962 Gm7419 processed_pseudogene Interval_9146 chr1 154036485 154037546 + 0 NA TTS (ENSMUSG00000100627.6) lincRNA-TTS (ENSMUSG00000100627.6) -2714 ENSMUSG00000100502.1 ENSMUSG00000100502 ENSMUST00000188704 Gm28286 lincRNA Interval_134828 chr6 31903854 31904755 + 0 NA intron (ENSMUSG00000087379.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000087379.1, intron 1 of 2) 117629 ENSMUSG00000087379.1 ENSMUSG00000087379 ENSMUST00000153328 Gm13849 lincRNA Interval_24698 chr11 35967684 35968299 + 0 NA intron (ENSMUSG00000018849.6, intron 1 of 22) protein_coding-intron (ENSMUSG00000018849.6, intron 1 of 22) -28063 ENSMUSG00000081571.1 ENSMUSG00000081571 ENSMUST00000117261 Gm12125 processed_pseudogene Interval_67921 chr16 59543992 59546026 + 0 NA intron (ENSMUSG00000022723.16, intron 7 of 21) protein_coding-intron (ENSMUSG00000022723.16, intron 4 of 18) -14818 ENSMUSG00000022723.16 ENSMUSG00000022723 ENSMUST00000139989 Crybg3 protein_coding Interval_104852 chr3 75940671 75940927 + 0 NA intron (ENSMUSG00000034109.15, intron 2 of 15) protein_coding-intron (ENSMUSG00000034109.15, intron 1 of 14) -11325 ENSMUSG00000103024.1 ENSMUSG00000103024 ENSMUST00000193507 Gm37685 TEC Interval_27239 chr11 64627522 64627747 + 0 NA Intergenic Intergenic -36994 ENSMUSG00000080430.1 ENSMUSG00000080430 ENSMUST00000116780 Gm24275 miRNA Interval_11615 chr1 183324043 183325057 + 0 NA TTS (ENSMUSG00000042901.10) protein_coding-TTS (ENSMUSG00000042901.10) 2437 ENSMUSG00000042901.10 ENSMUSG00000042901 ENSMUST00000195268 Aida protein_coding Interval_24714 chr11 36090355 36090847 + 0 NA intron (ENSMUSG00000049336.16, intron 13 of 28) protein_coding-intron (ENSMUSG00000049336.16, intron 13 of 28) 9937 ENSMUSG00000087245.1 ENSMUSG00000087245 ENSMUST00000147717 Gm12126 antisense Interval_160688 chr8 111601233 111601449 + 0 NA intron (ENSMUSG00000033545.14, intron 1 of 1) protein_coding-intron (ENSMUSG00000033545.14, intron 1 of 3) 27246 ENSMUSG00000031958.16 ENSMUSG00000031958 ENSMUST00000070004 Ldhd protein_coding Interval_145994 chr7 42951762 42952918 + 0 NA TTS (ENSMUSG00000080892.1) processed_pseudogene-TTS (ENSMUSG00000080892.1) 616 ENSMUSG00000080892.1 ENSMUSG00000080892 ENSMUST00000117401 Gm9266 processed_pseudogene Interval_23797 chr11 26370082 26370635 + 0 NA Intergenic Intergenic -16844 ENSMUSG00000004018.9 ENSMUSG00000004018 ENSMUST00000134445 Fancl protein_coding Interval_39842 chr12 98967466 98967978 + 0 NA intron (ENSMUSG00000021013.16, intron 9 of 13) protein_coding-intron (ENSMUSG00000021013.16, intron 10 of 14) 24219 ENSMUSG00000021013.16 ENSMUSG00000021013 ENSMUST00000139298 Ttc8 protein_coding Interval_93771 chr2 76758568 76758986 + 0 NA exon (ENSMUSG00000051747.15, exon 143 of 191) protein_coding-exon (ENSMUSG00000051747.15, exon 143 of 191) 36001 ENSMUSG00000086354.2 ENSMUSG00000086354 ENSMUST00000156809 Gm13938 antisense Interval_118461 chr4 131803114 131803503 + 0 NA promoter-TSS (ENSMUSG00000028909.17) protein_coding-promoter-TSS (ENSMUSG00000028909.17) -4938 ENSMUSG00000028909.17 ENSMUSG00000028909 ENSMUST00000139641 Ptpru protein_coding Interval_52129 chr14 36937382 36938612 + 0 NA intron (ENSMUSG00000058690.14, intron 2 of 6) protein_coding-intron (ENSMUSG00000058690.14, intron 3 of 9) -28816 ENSMUSG00000058690.14 ENSMUSG00000058690 ENSMUST00000182635 Ccser2 protein_coding Interval_165819 chr9 53473131 53473663 + 0 NA intron (ENSMUSG00000034218.16, intron 38 of 63) protein_coding-intron (ENSMUSG00000034218.16, intron 37 of 61) 63343 ENSMUSG00000034218.16 ENSMUSG00000034218 ENSMUST00000150244 Atm protein_coding Interval_43042 chr13 23445397 23446925 + 0 NA promoter-TSS (ENSMUSG00000113440.1) lincRNA-promoter-TSS (ENSMUSG00000113440.1) -226 ENSMUSG00000113440.1 ENSMUSG00000113440 ENSMUST00000221461 Gm46404 lincRNA Interval_18349 chr10 85133762 85134265 + 0 NA intron (ENSMUSG00000020038.10, intron 10 of 12) protein_coding-intron (ENSMUSG00000020038.10, intron 10 of 12) -5986 ENSMUSG00000049038.3 ENSMUSG00000049038 ENSMUST00000214193 Mterf2 protein_coding Interval_154858 chr8 24432755 24433640 + 0 NA intron (ENSMUSG00000097654.1, intron 2 of 2) antisense-intron (ENSMUSG00000097654.1, intron 2 of 2) 5787 ENSMUSG00000056313.5 ENSMUSG00000056313 ENSMUST00000052622 Tcim protein_coding Interval_70936 chr17 16332343 16332724 + 0 NA Intergenic Intergenic -11433 ENSMUSG00000116614.1 ENSMUSG00000116614 ENSMUST00000231650 Gm46610 processed_pseudogene Interval_99882 chr2 165563216 165564318 + 0 NA Intergenic Intergenic 38020 ENSMUSG00000100796.1 ENSMUSG00000100796 ENSMUST00000187099 Gm28163 lincRNA Interval_48643 chr13 100800567 100802309 + 0 NA Intergenic Intergenic -15036 ENSMUSG00000041431.16 ENSMUSG00000041431 ENSMUST00000142056 Ccnb1 protein_coding Interval_174455 chrX 152690124 152691187 + 0 NA intron (ENSMUSG00000045180.13, intron 2 of 9) protein_coding-intron (ENSMUSG00000045180.13, intron 2 of 9) -17415 ENSMUSG00000045180.13 ENSMUSG00000045180 ENSMUST00000141677 Shroom2 protein_coding Interval_96940 chr2 129738306 129738473 + 0 NA Intergenic Intergenic -11512 ENSMUSG00000084328.1 ENSMUSG00000084328 ENSMUST00000119389 Gm14046 processed_pseudogene Interval_159913 chr8 105151883 105153406 + 0 NA Intergenic Intergenic -11943 ENSMUSG00000099465.1 ENSMUSG00000099465 ENSMUST00000185540 Gm3830 lincRNA Interval_67628 chr16 53824761 53825202 + 0 NA Intergenic Intergenic -60389 ENSMUSG00000080508.1 ENSMUSG00000080508 ENSMUST00000116858 Gm25041 miRNA Interval_66854 chr16 38135318 38137798 + 0 NA intron (ENSMUSG00000022812.14, intron 1 of 11) protein_coding-intron (ENSMUSG00000022812.14, intron 1 of 10) -21450 ENSMUSG00000095395.2 ENSMUSG00000095395 ENSMUST00000179548 Gm25617 snoRNA Interval_167589 chr9 70834456 70835362 + 0 NA intron (ENSMUSG00000032207.10, intron 1 of 8) protein_coding-intron (ENSMUSG00000032207.10, intron 1 of 8) -17667 ENSMUSG00000096160.2 ENSMUSG00000096160 ENSMUST00000179930 Gm3436 processed_pseudogene Interval_173215 chrX 74273408 74274234 + 0 NA TTS (ENSMUSG00000008682.13) protein_coding-TTS (ENSMUSG00000008682.13) 284 ENSMUSG00000099226.1 ENSMUSG00000099226 ENSMUST00000184075 Mir7091 miRNA Interval_109976 chr3 152265313 152266409 + 0 NA promoter-TSS (ENSMUSG00000039103.12) protein_coding-promoter-TSS (ENSMUSG00000039103.12) -93 ENSMUSG00000039103.12 ENSMUSG00000039103 ENSMUST00000199752 Nexn protein_coding Interval_157923 chr8 76097472 76098660 + 0 NA intron (ENSMUSG00000110485.1, intron 1 of 9) lincRNA-intron (ENSMUSG00000110485.1, intron 1 of 9) 18961 ENSMUSG00000110553.1 ENSMUSG00000110553 ENSMUST00000212400 Gm45742 processed_pseudogene Interval_13378 chr10 17567586 17568113 + 0 NA intron (ENSMUSG00000112629.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000112629.1, intron 1 of 2) -40935 ENSMUSG00000111927.1 ENSMUSG00000111927 ENSMUST00000220318 Gm47770 lincRNA Interval_33070 chr11 114171922 114172368 + 0 NA Intergenic Intergenic 14632 ENSMUSG00000086135.1 ENSMUSG00000086135 ENSMUST00000126577 1700001J04Rik antisense Interval_148433 chr7 81211778 81214306 + 0 NA promoter-TSS (ENSMUSG00000025584.17) protein_coding-promoter-TSS (ENSMUSG00000025584.17) 8032 ENSMUSG00000109323.1 ENSMUSG00000109323 ENSMUST00000207652 Gm44968 lincRNA Interval_7180 chr1 127506863 127508317 + 0 NA intron (ENSMUSG00000026347.13, intron 5 of 7) protein_coding-intron (ENSMUSG00000026347.13, intron 5 of 8) 100814 ENSMUSG00000103390.1 ENSMUSG00000103390 ENSMUST00000195573 Gm38301 TEC Interval_22104 chr11 6364673 6367344 + 0 NA Intergenic Intergenic -30721 ENSMUSG00000041164.15 ENSMUSG00000041164 ENSMUST00000124588 Zmiz2 protein_coding Interval_159852 chr8 104368245 104368472 + 0 NA intron (ENSMUSG00000096188.1, intron 1 of 3) protein_coding-intron (ENSMUSG00000096188.1, intron 1 of 3) -4690 ENSMUSG00000110486.1 ENSMUSG00000110486 ENSMUST00000212110 Gm45877 sense_intronic Interval_48241 chr13 97375496 97376158 + 0 NA promoter-TSS (ENSMUSG00000114425.1) lincRNA-promoter-TSS (ENSMUSG00000114425.1) -407 ENSMUSG00000114425.1 ENSMUSG00000114425 ENSMUST00000223964 Gm33447 lincRNA Interval_143401 chr7 6409946 6410751 + 0 NA promoter-TSS (ENSMUSG00000045929.8) protein_coding-promoter-TSS (ENSMUSG00000045929.8) 71 ENSMUSG00000045929.8 ENSMUSG00000045929 ENSMUST00000054781 Gm20715 protein_coding Interval_159993 chr8 105647529 105647754 + 0 NA intron (ENSMUSG00000005698.15, intron 2 of 9) protein_coding-intron (ENSMUSG00000005698.15, intron 2 of 11) -10291 ENSMUSG00000098120.1 ENSMUSG00000098120 ENSMUST00000182046 Gm5914 lincRNA Interval_48513 chr13 99608962 99610123 + 0 NA Intergenic Intergenic -32432 ENSMUSG00000103545.1 ENSMUSG00000103545 ENSMUST00000193492 1700012J22Rik TEC Interval_150790 chr7 114633842 114634368 + 0 NA TTS (ENSMUSG00000030669.13) protein_coding-TTS (ENSMUSG00000030669.13) 2190 ENSMUSG00000030669.13 ENSMUSG00000030669 ENSMUST00000205714 Calca protein_coding Interval_83417 chr18 84996474 84996905 + 0 NA Intergenic Intergenic 16646 ENSMUSG00000118255.1 ENSMUSG00000118255 ENSMUST00000238005 Gm50369 processed_pseudogene Interval_146970 chr7 56463385 56463566 + 0 NA intron (ENSMUSG00000030450.11, intron 22 of 22) protein_coding-intron (ENSMUSG00000030450.11, intron 23 of 23) -220325 ENSMUSG00000108773.1 ENSMUSG00000108773 ENSMUST00000206278 Gm44506 antisense Interval_112345 chr4 40727435 40727872 + 0 NA exon (ENSMUSG00000028410.13, exon 4 of 8) protein_coding-exon (ENSMUSG00000028410.13, exon 4 of 8) 4731 ENSMUSG00000028410.13 ENSMUSG00000028410 ENSMUST00000148976 Dnaja1 protein_coding Interval_103 GL456221.1 166422 167210 + 0 NA NA NA NA NA Interval_54485 chr14 70170492 70171120 + 0 NA TTS (ENSMUSG00000022090.10) protein_coding-TTS (ENSMUSG00000022090.10) 6013 ENSMUSG00000022090.10 ENSMUSG00000022090 ENSMUST00000123125 Pdlim2 protein_coding Interval_110760 chr4 8116738 8117409 + 0 NA Intergenic Intergenic -1547 ENSMUSG00000083068.1 ENSMUSG00000083068 ENSMUST00000120050 Gm11800 processed_pseudogene Interval_169738 chr9 100800757 100800943 + 0 NA intron (ENSMUSG00000037286.15, intron 1 of 25) protein_coding-intron (ENSMUSG00000037286.15, intron 8 of 32) -76241 ENSMUSG00000103624.1 ENSMUSG00000103624 ENSMUST00000193413 Gm3081 TEC Interval_147337 chr7 65939239 65940000 + 0 NA intron (ENSMUSG00000030513.14, intron 6 of 19) protein_coding-intron (ENSMUSG00000030513.14, intron 6 of 21) -13393 ENSMUSG00000030513.14 ENSMUSG00000030513 ENSMUST00000177272 Pcsk6 protein_coding Interval_103641 chr3 51357746 51359835 + 0 NA Intergenic Intergenic -11432 ENSMUSG00000103654.1 ENSMUSG00000103654 ENSMUST00000191618 Gm37203 processed_pseudogene Interval_31948 chr11 104013089 104014016 + 0 NA Intergenic Intergenic 33963 ENSMUSG00000062421.13 ENSMUSG00000062421 ENSMUST00000154089 Arf2 protein_coding Interval_84298 chr19 9918313 9918932 + 0 NA Intergenic Intergenic 9912 ENSMUSG00000118008.1 ENSMUSG00000118008 ENSMUST00000236750 Gm36913 lincRNA Interval_63247 chr15 99916401 99916604 + 0 NA promoter-TSS (ENSMUSG00000116255.1) processed_pseudogene-promoter-TSS (ENSMUSG00000116255.1) -602 ENSMUSG00000116255.1 ENSMUSG00000116255 ENSMUST00000230306 Gm20564 processed_pseudogene Interval_104416 chr3 65455090 65456550 + 0 NA Intergenic Intergenic 39215 ENSMUSG00000103513.1 ENSMUSG00000103513 ENSMUST00000193896 Gm34780 TEC Interval_138086 chr6 85068557 85069783 + 0 NA intron (ENSMUSG00000033769.16, intron 1 of 2) protein_coding-intron (ENSMUSG00000033769.16, intron 1 of 16) 2987 ENSMUSG00000088849.1 ENSMUSG00000088849 ENSMUST00000158224 Gm26353 misc_RNA Interval_30216 chr11 90697356 90698279 + 0 NA Intergenic Intergenic -10229 ENSMUSG00000020541.12 ENSMUSG00000020541 ENSMUST00000131055 Tom1l1 protein_coding Interval_16786 chr10 68148437 68149239 + 0 NA intron (ENSMUSG00000019947.10, intron 4 of 10) protein_coding-intron (ENSMUSG00000019947.10, intron 4 of 10) -122212 ENSMUSG00000086838.1 ENSMUSG00000086838 ENSMUST00000143555 Gm16212 antisense Interval_154970 chr8 25360573 25362377 + 0 NA Intergenic Intergenic -37545 ENSMUSG00000110172.1 ENSMUSG00000110172 ENSMUST00000211376 Gm39147 transcribed_processed_pseudogene Interval_34758 chr12 9833454 9833802 + 0 NA Intergenic Intergenic 31822 ENSMUSG00000088337.1 ENSMUSG00000088337 ENSMUST00000157712 Gm22845 snRNA Interval_33434 chr11 116520764 116521487 + 0 NA Intergenic Intergenic 11952 ENSMUSG00000100779.1 ENSMUSG00000100779 ENSMUST00000186169 Gm29292 antisense Interval_161646 chr8 121784531 121785848 + 0 NA exon (ENSMUSG00000025318.13, exon 4 of 5) protein_coding-exon (ENSMUSG00000025318.13, exon 4 of 5) -21226 ENSMUSG00000092418.1 ENSMUSG00000092418 ENSMUST00000173993 Gm20406 antisense Interval_20719 chr10 120502243 120502582 + 0 NA Intergenic Intergenic -25943 ENSMUSG00000056758.14 ENSMUSG00000056758 ENSMUST00000159310 Hmga2 protein_coding Interval_136073 chr6 50498965 50500214 + 0 NA Intergenic Intergenic 40445 ENSMUSG00000077357.1 ENSMUSG00000077357 ENSMUST00000104169 Gm26289 snoRNA Interval_150513 chr7 111680119 111680337 + 0 NA intron (ENSMUSG00000038296.14, intron 1 of 10) protein_coding-intron (ENSMUSG00000038296.14, intron 1 of 10) 99749 ENSMUSG00000038296.14 ENSMUSG00000038296 ENSMUST00000106663 Galnt18 protein_coding Interval_64689 chr16 14205363 14205554 + 0 NA intron (ENSMUSG00000018830.10, intron 34 of 41) protein_coding-intron (ENSMUSG00000018830.10, intron 33 of 40) 30331 ENSMUSG00000022678.16 ENSMUSG00000022678 ENSMUST00000149232 Nde1 protein_coding Interval_54616 chr14 72056769 72057906 + 0 NA Intergenic Intergenic -73751 ENSMUSG00000064485.1 ENSMUSG00000064485 ENSMUST00000082551 Gm23735 snRNA Interval_25023 chr11 43281626 43281882 + 0 NA intron (ENSMUSG00000086791.1, intron 1 of 1) antisense-intron (ENSMUSG00000086791.1, intron 1 of 1) -21970 ENSMUSG00000085533.1 ENSMUSG00000085533 ENSMUST00000127604 Gm12146 antisense Interval_116327 chr4 109848587 109849366 + 0 NA intron (ENSMUSG00000010517.7, intron 2 of 5) protein_coding-intron (ENSMUSG00000010517.7, intron 12 of 18) 8191 ENSMUSG00000010517.7 ENSMUSG00000010517 ENSMUST00000155204 Faf1 protein_coding Interval_29625 chr11 85541577 85541774 + 0 NA intron (ENSMUSG00000059439.15, intron 7 of 14) protein_coding-intron (ENSMUSG00000059439.15, intron 16 of 24) 47916 ENSMUSG00000087779.1 ENSMUSG00000087779 ENSMUST00000157154 Gm23765 snRNA Interval_139783 chr6 108680410 108680662 + 0 NA Intergenic Intergenic 17490 ENSMUSG00000030103.11 ENSMUSG00000030103 ENSMUST00000204550 Bhlhe40 protein_coding Interval_88968 chr2 13739303 13739524 + 0 NA intron (ENSMUSG00000003418.11, intron 2 of 7) protein_coding-intron (ENSMUSG00000003418.11, intron 2 of 7) 53880 ENSMUSG00000003418.11 ENSMUSG00000003418 ENSMUST00000150781 St8sia6 protein_coding Interval_9508 chr1 158226898 158227759 + 0 NA Intergenic Intergenic 128901 ENSMUSG00000004031.13 ENSMUSG00000004031 ENSMUST00000192709 Brinp2 protein_coding Interval_60641 chr15 75877770 75878202 + 0 NA Intergenic Intergenic 10784 ENSMUSG00000098678.1 ENSMUSG00000098678 ENSMUST00000184858 Mroh6 protein_coding Interval_31287 chr11 99350869 99351265 + 0 NA promoter-TSS (ENSMUSG00000017588.2) protein_coding-promoter-TSS (ENSMUSG00000017588.2) 37 ENSMUSG00000017588.2 ENSMUSG00000017588 ENSMUST00000017732 Krt27 protein_coding Interval_95231 chr2 105047815 105048898 + 0 NA Intergenic Intergenic -16069 ENSMUSG00000083487.1 ENSMUSG00000083487 ENSMUST00000119148 Gm13888 processed_pseudogene Interval_38657 chr12 80858442 80858726 + 0 NA intron (ENSMUSG00000021133.9, intron 3 of 6) protein_coding-intron (ENSMUSG00000021133.9, intron 2 of 5) -52893 ENSMUSG00000065115.1 ENSMUSG00000065115 ENSMUST00000083181 Gm23298 snRNA Interval_11719 chr1 184869745 184870341 + 0 NA Intergenic Intergenic -11631 ENSMUSG00000088562.2 ENSMUSG00000088562 ENSMUST00000157937 Gm23780 misc_RNA Interval_15967 chr10 59735952 59736276 + 0 NA intron (ENSMUSG00000020111.15, intron 3 of 12) protein_coding-intron (ENSMUSG00000020111.15, intron 3 of 13) 27324 ENSMUSG00000090350.1 ENSMUSG00000090350 ENSMUST00000164702 Gm17148 processed_pseudogene Interval_150127 chr7 107180370 107180954 + 0 NA intron (ENSMUSG00000016626.10, intron 1 of 10) protein_coding-intron (ENSMUSG00000016626.10, intron 1 of 10) -6466 ENSMUSG00000016626.10 ENSMUSG00000016626 ENSMUST00000142623 Nlrp14 protein_coding Interval_81074 chr18 53649171 53650217 + 0 NA intron (ENSMUSG00000118362.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000118362.1, intron 1 of 2) 10588 ENSMUSG00000118362.1 ENSMUSG00000118362 ENSMUST00000235670 Gm19466 lincRNA Interval_73685 chr17 42799681 42799869 + 0 NA exon (ENSMUSG00000061665.7, exon 1 of 2) protein_coding-exon (ENSMUSG00000061665.7, exon 1 of 2) 31255 ENSMUSG00000061665.7 ENSMUSG00000061665 ENSMUST00000233626 Cd2ap protein_coding Interval_170620 chr9 109585127 109586165 + 0 NA Intergenic Intergenic -11422 ENSMUSG00000106495.1 ENSMUSG00000106495 ENSMUST00000198533 Gm42755 TEC Interval_100371 chr2 168686429 168686755 + 0 NA intron (ENSMUSG00000027546.15, intron 7 of 27) protein_coding-intron (ENSMUSG00000027546.15, intron 7 of 27) -45833 ENSMUSG00000105496.1 ENSMUSG00000105496 ENSMUST00000200215 Mir7004 miRNA Interval_77172 chr17 87062239 87064254 + 0 NA Intergenic Intergenic -9421 ENSMUSG00000087736.1 ENSMUSG00000087736 ENSMUST00000157111 Gm24648 snoRNA Interval_10620 chr1 172261510 172261901 + 0 NA promoter-TSS (ENSMUSG00000038034.15) protein_coding-promoter-TSS (ENSMUSG00000038034.15) -7738 ENSMUSG00000007107.6 ENSMUSG00000007107 ENSMUST00000193316 Atp1a4 protein_coding Interval_162938 chr9 13587213 13587486 + 0 NA intron (ENSMUSG00000031925.17, intron 1 of 4) protein_coding-intron (ENSMUSG00000031925.17, intron 1 of 4) -33877 ENSMUSG00000093092.1 ENSMUSG00000093092 ENSMUST00000175351 Gm22643 miRNA Interval_88421 chr2 4983611 4985535 + 0 NA intron (ENSMUSG00000026668.10, intron 4 of 4) protein_coding-intron (ENSMUSG00000026668.10, intron 3 of 3) 8389 ENSMUSG00000026668.10 ENSMUSG00000026668 ENSMUST00000195688 Ucma protein_coding Interval_71251 chr17 21613766 21614414 + 0 NA TTS (ENSMUSG00000117209.1) processed_pseudogene-TTS (ENSMUSG00000117209.1) 478 ENSMUSG00000117209.1 ENSMUSG00000117209 ENSMUST00000232712 Gm49954 processed_pseudogene Interval_37941 chr12 73202896 73203415 + 0 NA intron (ENSMUSG00000021103.12, intron 6 of 6) protein_coding-intron (ENSMUSG00000021103.12, intron 6 of 7) -57250 ENSMUSG00000077785.1 ENSMUSG00000077785 ENSMUST00000104597 Gm23910 snoRNA Interval_70648 chr17 12793814 12794357 + 0 NA intron (ENSMUSG00000078247.5, intron 2 of 2) antisense-intron (ENSMUSG00000078247.5, intron 1 of 1) -2425 ENSMUSG00000117030.1 ENSMUSG00000117030 ENSMUST00000232857 Gm49959 lincRNA Interval_135324 chr6 38332918 38334093 + 0 NA intron (ENSMUSG00000029826.14, intron 3 of 11) protein_coding-intron (ENSMUSG00000029826.14, intron 3 of 8) 20768 ENSMUSG00000029826.14 ENSMUSG00000029826 ENSMUST00000114898 Zc3hav1 protein_coding Interval_92352 chr2 59207471 59207924 + 0 NA intron (ENSMUSG00000026991.20, intron 2 of 3) protein_coding-intron (ENSMUSG00000026991.20, intron 1 of 21) 45770 ENSMUSG00000026991.20 ENSMUSG00000026991 ENSMUST00000124127 Pkp4 protein_coding Interval_93493 chr2 73521811 73522419 + 0 NA intron (ENSMUSG00000075284.10, intron 1 of 3) protein_coding-intron (ENSMUSG00000075284.10, intron 1 of 7) 58223 ENSMUSG00000027107.3 ENSMUSG00000027107 ENSMUST00000028515 Chrna1 protein_coding Interval_157696 chr8 72348979 72349302 + 0 NA intron (ENSMUSG00000006276.10, intron 5 of 5) protein_coding-intron (ENSMUSG00000006276.10, intron 5 of 5) 30107 ENSMUSG00000055148.7 ENSMUSG00000055148 ENSMUST00000067912 Klf2 protein_coding Interval_35260 chr12 19143687 19144318 + 0 NA Intergenic Intergenic -22957 ENSMUSG00000114156.1 ENSMUSG00000114156 ENSMUST00000222735 Gm48523 processed_pseudogene Interval_9951 chr1 164335933 164336850 + 0 NA intron (ENSMUSG00000026575.15, intron 4 of 8) protein_coding-intron (ENSMUSG00000026575.15, intron 3 of 7) 28664 ENSMUSG00000026575.15 ENSMUSG00000026575 ENSMUST00000192710 Nme7 protein_coding Interval_67430 chr16 48600996 48601776 + 0 NA intron (ENSMUSG00000022652.7, intron 1 of 5) protein_coding-intron (ENSMUSG00000022652.7, intron 20 of 26) 121754 ENSMUSG00000022652.7 ENSMUSG00000022652 ENSMUST00000232195 Morc1 protein_coding Interval_40880 chr12 109044290 109044920 + 0 NA intron (ENSMUSG00000040867.13, intron 2 of 6) protein_coding-intron (ENSMUSG00000040867.13, intron 2 of 3) 9170 ENSMUSG00000040867.13 ENSMUSG00000040867 ENSMUST00000185745 Begain protein_coding Interval_49000 chr13 106818760 106819921 + 0 NA intron (ENSMUSG00000042590.17, intron 2 of 2) protein_coding-intron (ENSMUSG00000042590.17, intron 28 of 29) 16462 ENSMUSG00000118423.1 ENSMUSG00000118423 ENSMUST00000238649 Lrrc70 transcribed_unitary_pseudogene Interval_103231 chr3 37235053 37235405 + 0 NA Intergenic Intergenic 2362 ENSMUSG00000104998.1 ENSMUSG00000104998 ENSMUST00000200285 Gm43822 TEC Interval_5329 chr1 87624318 87625463 + 0 NA intron (ENSMUSG00000026288.14, intron 1 of 3) protein_coding-intron (ENSMUSG00000026288.14, intron 1 of 26) 50863 ENSMUSG00000079434.8 ENSMUSG00000079434 ENSMUST00000070898 Neu2 protein_coding Interval_10660 chr1 172515257 172515940 + 0 NA TTS (ENSMUSG00000104351.1) TEC-TTS (ENSMUSG00000104351.1) 2349 ENSMUSG00000104351.1 ENSMUSG00000104351 ENSMUST00000195877 Gm37125 TEC Interval_102092 chr3 17050906 17051131 + 0 NA Intergenic Intergenic 179957 ENSMUSG00000095827.2 ENSMUSG00000095827 ENSMUST00000177874 Gm5283 processed_pseudogene Interval_122341 chr5 21542667 21543030 + 0 NA promoter-TSS (ENSMUSG00000039883.5) protein_coding-promoter-TSS (ENSMUSG00000039883.5) -711 ENSMUSG00000039883.5 ENSMUSG00000039883 ENSMUST00000035651 Lrrc17 protein_coding Interval_28040 chr11 72420284 72421137 + 0 NA Intergenic Intergenic -14824 ENSMUSG00000040471.17 ENSMUSG00000040471 ENSMUST00000100903 Ggt6 protein_coding Interval_63133 chr15 99264214 99266174 + 0 NA Intergenic Intergenic -10180 ENSMUSG00000093139.1 ENSMUSG00000093139 ENSMUST00000175398 Gm25999 snoRNA Interval_173984 chrX 122307832 122308673 + 0 NA Intergenic Intergenic -39361 ENSMUSG00000083537.3 ENSMUSG00000083537 ENSMUST00000119642 Gm14942 processed_pseudogene Interval_101067 chr2 174857996 174859998 + 0 NA intron (ENSMUSG00000086177.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000086177.1, intron 1 of 2) 2708 ENSMUSG00000086177.1 ENSMUSG00000086177 ENSMUST00000131690 Gm14616 lincRNA Interval_70326 chr17 8508468 8508919 + 0 NA Intergenic Intergenic 58257 ENSMUSG00000099104.1 ENSMUSG00000099104 ENSMUST00000184183 Gm17087 protein_coding Interval_41029 chr12 110695698 110696923 + 0 NA promoter-TSS (ENSMUSG00000021270.13) protein_coding-promoter-TSS (ENSMUSG00000021270.13) 6418 ENSMUSG00000021270.13 ENSMUSG00000021270 ENSMUST00000149189 Hsp90aa1 protein_coding Interval_83952 chr19 5786297 5787719 + 0 NA Intergenic Intergenic 9944 ENSMUSG00000092341.3 ENSMUSG00000092341 ENSMUST00000173499 Malat1 lincRNA Interval_85514 chr19 27751067 27751416 + 0 NA Intergenic Intergenic -47234 ENSMUSG00000088266.1 ENSMUSG00000088266 ENSMUST00000157641 Gm24782 snoRNA Interval_33710 chr11 118018162 118018764 + 0 NA intron (ENSMUSG00000017715.11, intron 1 of 2) protein_coding-intron (ENSMUSG00000017715.11, intron 8 of 9) 6120 ENSMUSG00000017715.11 ENSMUSG00000017715 ENSMUST00000155507 Pgs1 protein_coding Interval_84179 chr19 8548982 8550100 + 0 NA Intergenic Intergenic -7743 ENSMUSG00000110298.1 ENSMUSG00000110298 ENSMUST00000211159 Gm8189 transcribed_unprocessed_pseudogene Interval_56221 chr14 113457618 113458690 + 0 NA Intergenic Intergenic 32506 ENSMUSG00000086415.1 ENSMUSG00000086415 ENSMUST00000150617 Gm4487 processed_pseudogene Interval_160116 chr8 106545300 106545642 + 0 NA intron (ENSMUSG00000061048.8, intron 12 of 15) protein_coding-intron (ENSMUSG00000061048.8, intron 12 of 15) 27879 ENSMUSG00000060019.6 ENSMUSG00000060019 ENSMUST00000073722 Gm10073 processed_pseudogene Interval_18839 chr10 91200298 91201007 + 0 NA Intergenic Intergenic 19967 ENSMUSG00000111544.1 ENSMUSG00000111544 ENSMUST00000216451 4930534H03Rik lincRNA Interval_70847 chr17 15337819 15338365 + 0 NA Intergenic Intergenic -16210 ENSMUSG00000116647.1 ENSMUSG00000116647 ENSMUST00000232519 Gm7423 processed_pseudogene Interval_114692 chr4 83878124 83878809 + 0 NA Intergenic Intergenic 10392 ENSMUSG00000085378.1 ENSMUSG00000085378 ENSMUST00000128214 Gm11415 lincRNA Interval_164864 chr9 42573025 42573799 + 0 NA intron (ENSMUSG00000032017.14, intron 13 of 20) protein_coding-intron (ENSMUSG00000032017.14, intron 11 of 18) -52581 ENSMUSG00000093745.1 ENSMUSG00000093745 ENSMUST00000176676 Gm24420 misc_RNA Interval_39756 chr12 97130465 97130872 + 0 NA Intergenic Intergenic -28204 ENSMUSG00000112635.1 ENSMUSG00000112635 ENSMUST00000217786 Gm47397 lincRNA Interval_104353 chr3 63950805 63951054 + 0 NA intron (ENSMUSG00000027822.16, intron 2 of 6) protein_coding-intron (ENSMUSG00000027822.16, intron 2 of 5) -12706 ENSMUSG00000097724.2 ENSMUSG00000097724 ENSMUST00000192898 Gm26850 antisense Interval_106177 chr3 94363016 94364466 + 0 NA TTS (ENSMUSG00000091648.2) protein_coding-TTS (ENSMUSG00000091648.2) 1238 ENSMUSG00000091648.2 ENSMUSG00000091648 ENSMUST00000197526 C2cd4d protein_coding Interval_25294 chr11 46160556 46161334 + 0 NA intron (ENSMUSG00000020411.2, intron 2 of 5) protein_coding-intron (ENSMUSG00000020411.2, intron 2 of 5) 5563 ENSMUSG00000020411.2 ENSMUSG00000020411 ENSMUST00000020679 Nipal4 protein_coding Interval_152924 chr7 139779403 139779734 + 0 NA TTS (ENSMUSG00000098619.1) miRNA-TTS (ENSMUSG00000098619.1) 550 ENSMUSG00000098619.1 ENSMUSG00000098619 ENSMUST00000184499 Mir6401 miRNA Interval_40627 chr12 106098997 106099701 + 0 NA promoter-TSS (ENSMUSG00000113390.1) lincRNA-promoter-TSS (ENSMUSG00000113390.1) -378 ENSMUSG00000113390.1 ENSMUSG00000113390 ENSMUST00000221493 Gm32635 lincRNA Interval_21131 chr10 126783103 126783863 + 0 NA Intergenic Intergenic 10227 ENSMUSG00000112832.1 ENSMUSG00000112832 ENSMUST00000218870 4930484H19Rik lincRNA Interval_164415 chr9 36857313 36858227 + 0 NA intron (ENSMUSG00000032118.16, intron 2 of 8) protein_coding-intron (ENSMUSG00000032118.16, intron 3 of 9) 24962 ENSMUSG00000032118.16 ENSMUSG00000032118 ENSMUST00000161978 Fez1 protein_coding Interval_47905 chr13 94293496 94294354 + 0 NA promoter-TSS (ENSMUSG00000113494.1) lincRNA-promoter-TSS (ENSMUSG00000113494.1) -92 ENSMUSG00000113494.1 ENSMUSG00000113494 ENSMUST00000220853 Gm48102 lincRNA Interval_162013 chr8 124421458 124422051 + 0 NA intron (ENSMUSG00000050751.14, intron 1 of 6) protein_coding-intron (ENSMUSG00000050751.14, intron 1 of 6) 17904 ENSMUSG00000050751.14 ENSMUSG00000050751 ENSMUST00000140126 Pgbd5 protein_coding Interval_143021 chr6 148530721 148532108 + 0 NA Intergenic Intergenic 82895 ENSMUSG00000070995.10 ENSMUSG00000070995 ENSMUST00000150112 Gm6313 lincRNA Interval_150653 chr7 113109717 113109968 + 0 NA intron (ENSMUSG00000110009.1, intron 3 of 5) lincRNA-intron (ENSMUSG00000110009.1, intron 3 of 4) -9856 ENSMUSG00000088671.1 ENSMUSG00000088671 ENSMUST00000158046 Gm23662 rRNA Interval_50992 chr14 21523940 21524909 + 0 NA intron (ENSMUSG00000021767.19, intron 1 of 15) protein_coding-intron (ENSMUSG00000021767.19, intron 2 of 16) 7549 ENSMUSG00000021767.19 ENSMUSG00000021767 ENSMUST00000226589 Kat6b protein_coding Interval_46983 chr13 73925889 73926368 + 0 NA intron (ENSMUSG00000021569.10, intron 6 of 12) protein_coding-intron (ENSMUSG00000021569.10, intron 6 of 12) -1418 ENSMUSG00000095943.1 ENSMUSG00000095943 ENSMUST00000175516 Gm25197 miRNA Interval_145078 chr7 29915079 29915717 + 0 NA exon (ENSMUSG00000099689.6, exon 5 of 5) protein_coding-exon (ENSMUSG00000099689.6, exon 5 of 5) 7175 ENSMUSG00000099689.6 ENSMUSG00000099689 ENSMUST00000186475 Zfp383 protein_coding Interval_59969 chr15 62413232 62413898 + 0 NA Intergenic Intergenic -154410 ENSMUSG00000115862.1 ENSMUSG00000115862 ENSMUST00000230029 Gm41333 lincRNA Interval_113414 chr4 54746300 54746552 + 0 NA Intergenic Intergenic 35802 ENSMUSG00000084710.1 ENSMUSG00000084710 ENSMUST00000122761 Gm24628 misc_RNA Interval_115516 chr4 100041986 100042823 + 0 NA Intergenic Intergenic -10116 ENSMUSG00000085142.1 ENSMUSG00000085142 ENSMUST00000123258 Gm12702 lincRNA Interval_79579 chr18 33853662 33854231 + 0 NA intron (ENSMUSG00000024376.7, intron 13 of 23) protein_coding-intron (ENSMUSG00000024376.7, intron 13 of 23) 58782 ENSMUSG00000092819.1 ENSMUSG00000092819 ENSMUST00000175078 Gm23639 snoRNA Interval_85199 chr19 23692456 23693161 + 0 NA intron (ENSMUSG00000074925.4, intron 1 of 6) protein_coding-intron (ENSMUSG00000074925.4, intron 1 of 5) 5379 ENSMUSG00000074925.4 ENSMUSG00000074925 ENSMUST00000067077 Ptar1 protein_coding Interval_52560 chr14 47497698 47498251 + 0 NA intron (ENSMUSG00000037536.14, intron 1 of 3) protein_coding-intron (ENSMUSG00000037536.14, intron 1 of 1) 6406 ENSMUSG00000115570.1 ENSMUSG00000115570 ENSMUST00000228735 Gm48986 TEC Interval_125582 chr5 72185542 72185780 + 0 NA Intergenic Intergenic -13373 ENSMUSG00000105016.1 ENSMUSG00000105016 ENSMUST00000200539 Gm42569 processed_pseudogene Interval_26295 chr11 55873890 55874161 + 0 NA intron (ENSMUSG00000086020.1, intron 1 of 4) antisense-intron (ENSMUSG00000086020.1, intron 1 of 4) 101937 ENSMUSG00000086020.1 ENSMUSG00000086020 ENSMUST00000134285 Gm12239 antisense Interval_21708 chr11 3844001 3844583 + 0 NA intron (ENSMUSG00000020435.17, intron 1 of 2) protein_coding-intron (ENSMUSG00000020435.17, intron 1 of 13) -28663 ENSMUSG00000084077.1 ENSMUSG00000084077 ENSMUST00000121172 Gm11952 processed_pseudogene Interval_144618 chr7 27164545 27165366 + 0 NA TTS (ENSMUSG00000058709.11) protein_coding-TTS (ENSMUSG00000058709.11) -4084 ENSMUSG00000058709.11 ENSMUSG00000058709 ENSMUST00000134906 Egln2 protein_coding Interval_17948 chr10 81021890 81023031 + 0 NA exon (ENSMUSG00000043670.4, exon 2 of 2) protein_coding-exon (ENSMUSG00000043670.4, exon 2 of 2) -2623 ENSMUSG00000087114.1 ENSMUSG00000087114 ENSMUST00000151873 Gm16099 antisense Interval_39036 chr12 84589668 84591181 + 0 NA intron (ENSMUSG00000021239.12, intron 3 of 4) protein_coding-intron (ENSMUSG00000021239.12, intron 3 of 4) 20584 ENSMUSG00000021239.12 ENSMUSG00000021239 ENSMUST00000169934 Vsx2 protein_coding Interval_125266 chr5 65774094 65775134 + 0 NA intron (ENSMUSG00000037795.14, intron 2 of 4) protein_coding-intron (ENSMUSG00000037795.14, intron 2 of 17) -2400 ENSMUSG00000089337.1 ENSMUSG00000089337 ENSMUST00000158712 Gm24346 snoRNA Interval_171488 chr9 118731078 118731351 + 0 NA intron (ENSMUSG00000039115.13, intron 1 of 13) protein_coding-intron (ENSMUSG00000039115.13, intron 15 of 27) 106741 ENSMUSG00000066270.3 ENSMUSG00000066270 ENSMUST00000139408 Gm10157 processed_pseudogene Interval_70986 chr17 17010273 17010919 + 0 NA Intergenic Intergenic -53517 ENSMUSG00000096696.1 ENSMUSG00000096696 ENSMUST00000127027 Zfp960 protein_coding Interval_104017 chr3 57327681 57328623 + 0 NA Intergenic Intergenic -33600 ENSMUSG00000027800.14 ENSMUSG00000027800 ENSMUST00000196704 Tm4sf1 protein_coding Interval_92486 chr2 60064707 60064942 + 0 NA intron (ENSMUSG00000026987.16, intron 1 of 34) protein_coding-intron (ENSMUSG00000026987.16, intron 1 of 34) 27683 ENSMUSG00000085975.1 ENSMUSG00000085975 ENSMUST00000153675 Gm13572 lincRNA Interval_102854 chr3 32314054 32315028 + 0 NA Intergenic Intergenic 51473 ENSMUSG00000027663.12 ENSMUSG00000027663 ENSMUST00000195055 Zmat3 protein_coding Interval_27258 chr11 65008333 65008678 + 0 NA intron (ENSMUSG00000033389.16, intron 15 of 17) protein_coding-intron (ENSMUSG00000033389.16, intron 18 of 20) 29036 ENSMUSG00000083935.1 ENSMUSG00000083935 ENSMUST00000119723 Gm12294 processed_pseudogene Interval_33058 chr11 113990296 113990877 + 0 NA intron (ENSMUSG00000041592.16, intron 1 of 11) protein_coding-intron (ENSMUSG00000041592.16, intron 1 of 44) -100820 ENSMUSG00000086760.1 ENSMUSG00000086760 ENSMUST00000129365 1700025D23Rik lincRNA Interval_84261 chr19 9074831 9077190 + 0 NA intron (ENSMUSG00000069833.13, intron 6 of 6) protein_coding-intron (ENSMUSG00000069833.13, intron 5 of 5) 11948 ENSMUSG00000024653.2 ENSMUSG00000024653 ENSMUST00000025554 Scgb1a1 protein_coding Interval_126904 chr5 96964347 96965299 + 0 NA Intergenic Intergenic 24526 ENSMUSG00000105257.1 ENSMUSG00000105257 ENSMUST00000198256 Gm43144 TEC Interval_9572 chr1 159523553 159524556 + 0 NA exon (ENSMUSG00000015829.13, exon 1 of 23) protein_coding-exon (ENSMUSG00000015829.13, exon 1 of 23) 213 ENSMUSG00000015829.13 ENSMUSG00000015829 ENSMUST00000192457 Tnr protein_coding Interval_71636 chr17 25015277 25016972 + 0 NA promoter-TSS (ENSMUSG00000024169.16) protein_coding-promoter-TSS (ENSMUSG00000024169.16) -336 ENSMUSG00000038002.9 ENSMUSG00000038002 ENSMUST00000233169 Cramp1l protein_coding Interval_96334 chr2 121711668 121712193 + 0 NA intron (ENSMUSG00000027238.17, intron 1 of 7) protein_coding-intron (ENSMUSG00000027238.17, intron 1 of 13) -6600 ENSMUSG00000084244.1 ENSMUSG00000084244 ENSMUST00000118165 Gm14020 processed_pseudogene Interval_22533 chr11 11557043 11558253 + 0 NA intron (ENSMUSG00000087452.1, intron 1 of 2) antisense-intron (ENSMUSG00000087452.1, intron 1 of 2) 227 ENSMUSG00000087452.1 ENSMUSG00000087452 ENSMUST00000146304 Gm11998 antisense Interval_51701 chr14 31499399 31500263 + 0 NA intron (ENSMUSG00000021890.6, intron 2 of 2) protein_coding-intron (ENSMUSG00000021890.6, intron 2 of 5) 4635 ENSMUSG00000021890.6 ENSMUSG00000021890 ENSMUST00000227551 Eaf1 protein_coding Interval_87922 chr19 57128215 57129988 + 0 NA intron (ENSMUSG00000025085.16, intron 6 of 20) protein_coding-intron (ENSMUSG00000025085.16, intron 6 of 25) -144859 ENSMUSG00000117684.1 ENSMUSG00000117684 ENSMUST00000237596 4930449E18Rik antisense Interval_2269 chr1 37565155 37566230 + 0 NA Intergenic Intergenic -29441 ENSMUSG00000026110.15 ENSMUSG00000026110 ENSMUST00000195598 Mgat4a protein_coding Interval_168417 chr9 80156623 80156866 + 0 NA Intergenic Intergenic -8483 ENSMUSG00000033577.18 ENSMUSG00000033577 ENSMUST00000138650 Myo6 protein_coding Interval_104106 chr3 58636228 58637318 + 0 NA exon (ENSMUSG00000070471.3, exon 1 of 14) protein_coding-exon (ENSMUSG00000070471.3, exon 1 of 14) 434 ENSMUSG00000070471.3 ENSMUSG00000070471 ENSMUST00000041115 Erich6 protein_coding Interval_71109 chr17 18367258 18367794 + 0 NA Intergenic Intergenic -56552 ENSMUSG00000091631.2 ENSMUSG00000091631 ENSMUST00000232090 Vmn2r95 protein_coding Interval_164764 chr9 41461605 41462215 + 0 NA intron (ENSMUSG00000111593.1, intron 1 of 1) processed_transcript-intron (ENSMUSG00000074415.14, intron 4 of 4) -12945 ENSMUSG00000111462.2 ENSMUSG00000111462 ENSMUST00000212079 Gm49317 lincRNA Interval_172194 chrX 8776473 8776686 + 0 NA Intergenic Intergenic -27112 ENSMUSG00000071816.5 ENSMUSG00000071816 ENSMUST00000089370 Ssxb5 protein_coding Interval_138346 chr6 87466327 87466856 + 0 NA exon (ENSMUSG00000030047.14, exon 7 of 10) protein_coding-exon (ENSMUSG00000030047.14, exon 7 of 10) -2944 ENSMUSG00000030047.14 ENSMUSG00000030047 ENSMUST00000203559 Arhgap25 protein_coding Interval_149956 chr7 103711629 103712658 + 0 NA Intergenic Intergenic -2528 ENSMUSG00000094822.2 ENSMUSG00000094822 ENSMUST00000098194 Olfr243 protein_coding Interval_107592 chr3 108770967 108772201 + 0 NA intron (ENSMUSG00000049565.16, intron 6 of 11) protein_coding-intron (ENSMUSG00000049565.16, intron 7 of 9) 19058 ENSMUSG00000049565.16 ENSMUSG00000049565 ENSMUST00000147916 Aknad1 protein_coding Interval_136130 chr6 51393533 51393835 + 0 NA TTS (ENSMUSG00000107660.1) lincRNA-TTS (ENSMUSG00000107660.1) 8535 ENSMUSG00000108236.1 ENSMUSG00000108236 ENSMUST00000204546 0610033M10Rik lincRNA Interval_154191 chr8 13307976 13308198 + 0 NA intron (ENSMUSG00000038497.7, intron 7 of 12) protein_coding-intron (ENSMUSG00000038497.7, intron 7 of 12) 19849 ENSMUSG00000038497.7 ENSMUSG00000038497 ENSMUST00000210750 Tmco3 protein_coding Interval_85768 chr19 30660644 30662421 + 0 NA intron (ENSMUSG00000052920.16, intron 3 of 10) protein_coding-intron (ENSMUSG00000052920.16, intron 9 of 17) -42549 ENSMUSG00000084432.1 ENSMUSG00000084432 ENSMUST00000122483 Gm23426 misc_RNA Interval_27342 chr11 66696648 66697864 + 0 NA Intergenic Intergenic 133649 ENSMUSG00000080978.2 ENSMUSG00000080978 ENSMUST00000121380 Gm12297 processed_pseudogene Interval_71744 chr17 25823495 25823891 + 0 NA promoter-TSS (ENSMUSG00000025737.5) protein_coding-promoter-TSS (ENSMUSG00000025737.5) -837 ENSMUSG00000025737.5 ENSMUSG00000025737 ENSMUST00000160275 Wdr24 protein_coding Interval_95953 chr2 118658235 118660314 + 0 NA Intergenic Intergenic -4488 ENSMUSG00000074923.10 ENSMUSG00000074923 ENSMUST00000132577 Pak6 protein_coding Interval_19987 chr10 111684852 111685053 + 0 NA Intergenic Intergenic -35140 ENSMUSG00000112357.1 ENSMUSG00000112357 ENSMUST00000217989 Gm47864 processed_pseudogene Interval_99821 chr2 165136078 165136982 + 0 NA intron (ENSMUSG00000053166.14, intron 6 of 10) protein_coding-intron (ENSMUSG00000053166.14, intron 7 of 11) -22882 ENSMUSG00000086630.1 ENSMUSG00000086630 ENSMUST00000124728 Gm14397 antisense Interval_109513 chr3 143310727 143310973 + 0 NA Intergenic Intergenic -19570 ENSMUSG00000106162.1 ENSMUSG00000106162 ENSMUST00000199409 Gm43613 lincRNA Interval_166397 chr9 58967073 58968098 + 0 NA intron (ENSMUSG00000032340.8, intron 5 of 14) protein_coding-intron (ENSMUSG00000032340.8, intron 5 of 28) -11666 ENSMUSG00000111846.1 ENSMUSG00000111846 ENSMUST00000216941 Gm47271 antisense Interval_12519 chr1 194774642 194775325 + 0 NA intron (ENSMUSG00000026640.12, intron 3 of 4) protein_coding-intron (ENSMUSG00000026640.12, intron 12 of 31) 42276 ENSMUSG00000103776.1 ENSMUSG00000103776 ENSMUST00000194966 2900035J10Rik TEC Interval_171921 chr9 122591262 122591476 + 0 NA intron (ENSMUSG00000097736.8, intron 2 of 3) lincRNA-intron (ENSMUSG00000097736.8, intron 2 of 3) 18867 ENSMUSG00000097736.8 ENSMUSG00000097736 ENSMUST00000181719 9530059O14Rik lincRNA Interval_7115 chr1 126167744 126169145 + 0 NA intron (ENSMUSG00000049690.15, intron 5 of 10) protein_coding-intron (ENSMUSG00000049690.15, intron 4 of 12) -96983 ENSMUSG00000102723.1 ENSMUSG00000102723 ENSMUST00000194647 Gm37936 TEC Interval_42065 chr13 7193877 7194396 + 0 NA Intergenic Intergenic -29801 ENSMUSG00000113241.1 ENSMUSG00000113241 ENSMUST00000221816 Gm40663 lincRNA Interval_65769 chr16 28493542 28493841 + 0 NA intron (ENSMUSG00000022523.10, intron 1 of 4) protein_coding-intron (ENSMUSG00000022523.10, intron 1 of 3) 106352 ENSMUSG00000076064.1 ENSMUSG00000076064 ENSMUST00000102110 Mir690 miRNA Interval_29982 chr11 88526546 88528043 + 0 NA intron (ENSMUSG00000069769.13, intron 1 of 5) protein_coding-intron (ENSMUSG00000069769.13, intron 6 of 13) 62853 ENSMUSG00000069769.13 ENSMUSG00000069769 ENSMUST00000126293 Msi2 protein_coding Interval_163556 chr9 22084989 22085977 + 0 NA promoter-TSS (ENSMUSG00000066839.12) protein_coding-promoter-TSS (ENSMUSG00000066839.12) -48 ENSMUSG00000066839.12 ENSMUSG00000066839 ENSMUST00000217445 Ecsit protein_coding Interval_164224 chr9 32789061 32789513 + 0 NA Intergenic Intergenic -24447 ENSMUSG00000099148.1 ENSMUSG00000099148 ENSMUST00000183423 Gm3331 lincRNA Interval_149675 chr7 100561847 100562167 + 0 NA intron (ENSMUSG00000030706.17, intron 3 of 3) protein_coding-intron (ENSMUSG00000030706.17, intron 3 of 6) -9915 ENSMUSG00000108990.1 ENSMUSG00000108990 ENSMUST00000208267 Gm44648 processed_pseudogene Interval_53891 chr14 63157625 63158364 + 0 NA intron (ENSMUSG00000021273.11, intron 3 of 6) protein_coding-intron (ENSMUSG00000021273.11, intron 4 of 7) 6931 ENSMUSG00000021273.11 ENSMUSG00000021273 ENSMUST00000224267 Fdft1 protein_coding Interval_152715 chr7 136791316 136791692 + 0 NA Intergenic Intergenic -19405 ENSMUSG00000110126.1 ENSMUSG00000110126 ENSMUST00000211473 Gm9347 processed_pseudogene Interval_60535 chr15 74691086 74692544 + 0 NA Intergenic Intergenic -17346 ENSMUSG00000044276.2 ENSMUSG00000044276 ENSMUST00000056711 4933427E11Rik antisense Interval_129126 chr5 117555063 117555413 + 0 NA exon (ENSMUSG00000061578.8, exon 4 of 4) protein_coding-exon (ENSMUSG00000061578.8, exon 4 of 4) 34539 ENSMUSG00000107199.1 ENSMUSG00000107199 ENSMUST00000201553 Gm42550 TEC Interval_5585 chr1 89974405 89975048 + 0 NA intron (ENSMUSG00000067081.13, intron 2 of 4) protein_coding-intron (ENSMUSG00000067081.13, intron 3 of 5) 21726 ENSMUSG00000067081.13 ENSMUSG00000067081 ENSMUST00000151330 Asb18 protein_coding Interval_126951 chr5 98194900 98195203 + 0 NA Intergenic Intergenic -9067 ENSMUSG00000045238.9 ENSMUSG00000045238 ENSMUST00000205851 A730035I17Rik antisense Interval_106912 chr3 101822204 101822586 + 0 NA intron (ENSMUSG00000044313.13, intron 4 of 6) protein_coding-intron (ENSMUSG00000044313.13, intron 4 of 6) 26564 ENSMUSG00000044313.13 ENSMUSG00000044313 ENSMUST00000118411 Mab21l3 protein_coding Interval_127628 chr5 105925783 105926538 + 0 NA Intergenic Intergenic 46577 ENSMUSG00000105341.1 ENSMUSG00000105341 ENSMUST00000196459 Gm43817 TEC Interval_105572 chr3 87833280 87833677 + 0 NA Intergenic Intergenic -13533 ENSMUSG00000028071.12 ENSMUSG00000028071 ENSMUST00000194639 Sh2d2a protein_coding Interval_126759 chr5 92674728 92676077 + 0 NA promoter-TSS (ENSMUSG00000050050.17) protein_coding-promoter-TSS (ENSMUSG00000050050.17) -31518 ENSMUSG00000050050.17 ENSMUSG00000050050 ENSMUST00000150359 Ccdc158 protein_coding Interval_6105 chr1 97024624 97024835 + 0 NA promoter-TSS (ENSMUSG00000044757.7) processed_pseudogene-promoter-TSS (ENSMUSG00000044757.7) 48 ENSMUSG00000044757.7 ENSMUSG00000044757 ENSMUST00000054664 Gm6430 processed_pseudogene Interval_48297 chr13 97928558 97928818 + 0 NA TTS (ENSMUSG00000021662.11) protein_coding-TTS (ENSMUSG00000021662.11) -52026 ENSMUSG00000114474.1 ENSMUSG00000114474 ENSMUST00000225575 Gm34388 lincRNA Interval_58430 chr15 34471320 34472080 + 0 NA intron (ENSMUSG00000044726.8, intron 2 of 2) protein_coding-intron (ENSMUSG00000044726.8, intron 2 of 2) -10007 ENSMUSG00000115300.1 ENSMUSG00000115300 ENSMUST00000226218 Gm49188 TEC Interval_119168 chr4 135951664 135952694 + 0 NA intron (ENSMUSG00000028672.13, intron 2 of 5) protein_coding-intron (ENSMUSG00000028672.13, intron 2 of 8) 3649 ENSMUSG00000028672.13 ENSMUSG00000028672 ENSMUST00000135644 Hmgcl protein_coding Interval_161927 chr8 123816883 123818061 + 0 NA intron (ENSMUSG00000019478.16, intron 1 of 7) protein_coding-intron (ENSMUSG00000019478.16, intron 1 of 6) -9857 ENSMUSG00000019478.16 ENSMUSG00000019478 ENSMUST00000212846 Rab4a protein_coding Interval_170431 chr9 107922994 107923502 + 0 NA Intergenic Intergenic -5221 ENSMUSG00000066368.1 ENSMUSG00000066368 ENSMUST00000085073 Actl11 protein_coding Interval_28880 chr11 79014562 79016344 + 0 NA exon (ENSMUSG00000018334.18, exon 19 of 19) protein_coding-exon (ENSMUSG00000018334.18, exon 19 of 19) -8144 ENSMUSG00000085941.1 ENSMUSG00000085941 ENSMUST00000143473 Gm11201 antisense Interval_7839 chr1 134062924 134063752 + 0 NA Intergenic Intergenic 15782 ENSMUSG00000020423.6 ENSMUSG00000020423 ENSMUST00000020692 Btg2 protein_coding Interval_58199 chr15 30672794 30674176 + 0 NA intron (ENSMUSG00000022240.10, intron 8 of 21) protein_coding-intron (ENSMUSG00000022240.10, intron 8 of 22) -46864 ENSMUSG00000115337.1 ENSMUSG00000115337 ENSMUST00000228499 4930570B17Rik antisense Interval_6701 chr1 118868059 118868655 + 0 NA intron (ENSMUSG00000048402.14, intron 2 of 7) protein_coding-intron (ENSMUSG00000048402.14, intron 3 of 13) 58221 ENSMUSG00000100040.1 ENSMUSG00000100040 ENSMUST00000190981 Gm28467 processed_pseudogene Interval_84074 chr19 7066509 7067039 + 0 NA intron (ENSMUSG00000036278.7, intron 3 of 10) protein_coding-intron (ENSMUSG00000036278.7, intron 3 of 10) 9964 ENSMUSG00000036278.7 ENSMUSG00000036278 ENSMUST00000040261 Macrod1 protein_coding Interval_134169 chr6 22325348 22326220 + 0 NA intron (ENSMUSG00000029672.16, intron 5 of 5) protein_coding-intron (ENSMUSG00000029672.16, intron 4 of 8) 18129 ENSMUSG00000029672.16 ENSMUSG00000029672 ENSMUST00000168965 Fam3c protein_coding Interval_118546 chr4 132411072 132412550 + 0 NA intron (ENSMUSG00000066043.13, intron 2 of 5) protein_coding-intron (ENSMUSG00000066043.13, intron 2 of 12) 3502 ENSMUSG00000096350.1 ENSMUSG00000096350 ENSMUST00000175120 Gm25707 miRNA Interval_74894 chr17 57118197 57119856 + 0 NA Intergenic Intergenic 3908 ENSMUSG00000117064.1 ENSMUSG00000117064 ENSMUST00000233215 Gm49892 processed_pseudogene Interval_57784 chr15 19904004 19904264 + 0 NA Intergenic Intergenic 114731 ENSMUSG00000115830.1 ENSMUSG00000115830 ENSMUST00000226614 Gm49176 processed_pseudogene Interval_83946 chr19 5745683 5747720 + 0 NA TTS (ENSMUSG00000024940.11) protein_coding-TTS (ENSMUSG00000024940.11) -10269 ENSMUSG00000024940.11 ENSMUSG00000024940 ENSMUST00000237180 Ltbp3 protein_coding Interval_27663 chr11 69366101 69366732 + 0 NA intron (ENSMUSG00000018474.18, intron 1 of 39) protein_coding-intron (ENSMUSG00000018474.18, intron 1 of 38) -15755 ENSMUSG00000087881.1 ENSMUSG00000087881 ENSMUST00000157256 Gm22442 scaRNA Interval_52524 chr14 47323773 47324038 + 0 NA TTS (ENSMUSG00000021840.17) protein_coding-TTS (ENSMUSG00000021840.17) -2849 ENSMUSG00000115728.1 ENSMUSG00000115728 ENSMUST00000227470 Gm49190 processed_pseudogene Interval_74314 chr17 48795649 48795981 + 0 NA Intergenic Intergenic -57069 ENSMUSG00000110276.1 ENSMUSG00000110276 ENSMUST00000209681 Gm45330 lincRNA Interval_89197 chr2 18001172 18001379 + 0 NA Intergenic Intergenic -2770 ENSMUSG00000081116.1 ENSMUSG00000081116 ENSMUST00000117063 Gm13329 processed_pseudogene Interval_36217 chr12 39758280 39758525 + 0 NA Intergenic Intergenic -6784 ENSMUSG00000113277.1 ENSMUSG00000113277 ENSMUST00000220920 Gm18116 processed_pseudogene Interval_95226 chr2 105007217 105007403 + 0 NA promoter-TSS (ENSMUSG00000027170.12) protein_coding-promoter-TSS (ENSMUSG00000027170.12) -487 ENSMUSG00000027170.12 ENSMUSG00000027170 ENSMUST00000111110 Eif3m protein_coding Interval_1556 chr1 25829534 25830993 + 0 NA promoter-TSS (ENSMUSG00000033569.17) protein_coding-promoter-TSS (ENSMUSG00000033569.17) -394 ENSMUSG00000104516.1 ENSMUSG00000104516 ENSMUST00000194343 Gm9884 TEC Interval_97961 chr2 146195191 146195726 + 0 NA intron (ENSMUSG00000037143.17, intron 9 of 10) protein_coding-intron (ENSMUSG00000037143.17, intron 25 of 26) -19155 ENSMUSG00000037143.17 ENSMUSG00000037143 ENSMUST00000167179 Cfap61 protein_coding Interval_171317 chr9 116319647 116320147 + 0 NA Intergenic Intergenic -11271 ENSMUSG00000110752.1 ENSMUSG00000110752 ENSMUST00000217456 D730003K21Rik lincRNA Interval_122932 chr5 27479705 27480250 + 0 NA intron (ENSMUSG00000061576.15, intron 5 of 25) protein_coding-intron (ENSMUSG00000061576.15, intron 5 of 25) 21385 ENSMUSG00000048703.9 ENSMUSG00000048703 ENSMUST00000124535 Speer4b protein_coding Interval_41158 chr12 111550071 111551243 + 0 NA Intergenic Intergenic 8353 ENSMUSG00000113462.1 ENSMUSG00000113462 ENSMUST00000220847 Gm48248 processed_pseudogene Interval_161175 chr8 118168890 118169106 + 0 NA Intergenic Intergenic 48044 ENSMUSG00000065028.1 ENSMUSG00000065028 ENSMUST00000083094 Gm25200 snoRNA Interval_96381 chr2 122069323 122070180 + 0 NA intron (ENSMUSG00000033396.13, intron 27 of 39) protein_coding-intron (ENSMUSG00000033396.13, intron 27 of 39) 41099 ENSMUSG00000027236.8 ENSMUSG00000027236 ENSMUST00000142747 Eif3j1 protein_coding Interval_4592 chr1 75316779 75318090 + 0 NA promoter-TSS (ENSMUSG00000026209.15) protein_coding-promoter-TSS (ENSMUSG00000026209.15) 13 ENSMUSG00000026209.15 ENSMUSG00000026209 ENSMUST00000189282 Dnpep protein_coding Interval_154474 chr8 18554572 18554976 + 0 NA Intergenic Intergenic -40802 ENSMUSG00000039842.15 ENSMUSG00000039842 ENSMUST00000141244 Mcph1 protein_coding Interval_111253 chr4 16052665 16052916 + 0 NA Intergenic Intergenic -38994 ENSMUSG00000041153.9 ENSMUSG00000041153 ENSMUST00000124770 Osgin2 protein_coding Interval_117711 chr4 125715380 125716114 + 0 NA Intergenic Intergenic 206670 ENSMUSG00000085562.7 ENSMUSG00000085562 ENSMUST00000144539 2610028E06Rik lincRNA Interval_124357 chr5 44470185 44470455 + 0 NA Intergenic Intergenic 25101 ENSMUSG00000105282.1 ENSMUSG00000105282 ENSMUST00000200184 Gm42981 TEC Interval_158149 chr8 79223239 79223748 + 0 NA intron (ENSMUSG00000031682.5, intron 2 of 2) protein_coding-intron (ENSMUSG00000031682.5, intron 2 of 5) -2437 ENSMUSG00000110388.1 ENSMUSG00000110388 ENSMUST00000211572 Gm30329 antisense Interval_169118 chr9 92846741 92847851 + 0 NA Intergenic Intergenic -48536 ENSMUSG00000099823.1 ENSMUSG00000099823 ENSMUST00000187280 Gm28054 lincRNA Interval_108565 chr3 129071744 129072373 + 0 NA Intergenic Intergenic -1514 ENSMUSG00000099640.1 ENSMUSG00000099640 ENSMUST00000188986 Gm28543 lincRNA Interval_86178 chr19 37574666 37574996 + 0 NA intron (ENSMUSG00000053799.8, intron 6 of 22) protein_coding-intron (ENSMUSG00000053799.8, intron 5 of 21) 53952 ENSMUSG00000053799.8 ENSMUSG00000053799 ENSMUST00000238817 Exoc6 protein_coding Interval_158882 chr8 87687492 87687754 + 0 NA intron (ENSMUSG00000045333.15, intron 4 of 5) protein_coding-intron (ENSMUSG00000045333.15, intron 5 of 6) 50966 ENSMUSG00000089301.1 ENSMUSG00000089301 ENSMUST00000158676 Gm24841 misc_RNA Interval_33915 chr11 119386155 119386876 + 0 NA Intergenic Intergenic -3957 ENSMUSG00000088015.1 ENSMUSG00000088015 ENSMUST00000157390 Mir1932 miRNA Interval_100568 chr2 170160101 170160767 + 0 NA Intergenic Intergenic -12331 ENSMUSG00000052056.14 ENSMUSG00000052056 ENSMUST00000149318 Zfp217 protein_coding Interval_32790 chr11 110671046 110671444 + 0 NA Intergenic Intergenic 126738 ENSMUSG00000085985.1 ENSMUSG00000085985 ENSMUST00000144689 Gm11682 lincRNA Interval_41148 chr12 111503162 111503772 + 0 NA Intergenic Intergenic -3845 ENSMUSG00000113029.1 ENSMUSG00000113029 ENSMUST00000220837 Gm40578 antisense Interval_4827 chr1 79857195 79859675 + 0 NA exon (ENSMUSG00000026249.10, exon 1 of 1) protein_coding-exon (ENSMUSG00000026249.10, exon 1 of 1) -38131 ENSMUSG00000026249.10 ENSMUSG00000026249 ENSMUST00000191026 Serpine2 protein_coding Interval_19588 chr10 104343584 104343905 + 0 NA Intergenic Intergenic 56475 ENSMUSG00000099264.1 ENSMUSG00000099264 ENSMUST00000183556 Mir6411 miRNA Interval_67073 chr16 42589354 42590381 + 0 NA Intergenic Intergenic -74059 ENSMUSG00000116679.1 ENSMUSG00000116679 ENSMUST00000232064 Gm49739 processed_pseudogene Interval_46379 chr13 64353385 64353629 + 0 NA Intergenic Intergenic -7545 ENSMUSG00000113683.1 ENSMUSG00000113683 ENSMUST00000221233 Gm47123 antisense Interval_117843 chr4 126574948 126575270 + 0 NA exon (ENSMUSG00000042489.15, exon 12 of 26) protein_coding-exon (ENSMUSG00000042489.15, exon 12 of 26) 9700 ENSMUSG00000081319.1 ENSMUSG00000081319 ENSMUST00000121439 Gm12936 processed_pseudogene Interval_100505 chr2 169728172 169729478 + 0 NA intron (ENSMUSG00000047907.11, intron 1 of 2) protein_coding-intron (ENSMUSG00000047907.11, intron 1 of 1) -100507 ENSMUSG00000103662.1 ENSMUSG00000103662 ENSMUST00000191912 Gm34294 TEC Interval_7571 chr1 132268785 132269319 + 0 NA Intergenic Intergenic 11359 ENSMUSG00000101549.1 ENSMUSG00000101549 ENSMUST00000185761 Gm29630 lincRNA Interval_39934 chr12 99898081 99898694 + 0 NA intron (ENSMUSG00000021177.16, intron 5 of 15) protein_coding-intron (ENSMUSG00000021177.16, intron 4 of 14) -6541 ENSMUSG00000113223.1 ENSMUSG00000113223 ENSMUST00000221445 Gm48147 unprocessed_pseudogene Interval_14853 chr10 40521460 40522125 + 0 NA Intergenic Intergenic -27100 ENSMUSG00000111251.1 ENSMUSG00000111251 ENSMUST00000214826 Gm18671 processed_pseudogene Interval_3396 chr1 57953975 57954489 + 0 NA TTS (ENSMUSG00000054770.16) protein_coding-TTS (ENSMUSG00000054770.16) 8749 ENSMUSG00000054770.16 ENSMUSG00000054770 ENSMUST00000160130 Kctd18 protein_coding Interval_106405 chr3 95966002 95966880 + 0 NA Intergenic Intergenic -2053 ENSMUSG00000106640.1 ENSMUSG00000106640 ENSMUST00000197308 Gm20940 processed_pseudogene Interval_98917 chr2 156007541 156008565 + 0 NA promoter-TSS (ENSMUSG00000005881.13) protein_coding-promoter-TSS (ENSMUSG00000005881.13) -2394 ENSMUSG00000005881.13 ENSMUSG00000005881 ENSMUST00000149381 Ergic3 protein_coding Interval_2272 chr1 37614414 37614618 + 0 NA exon (ENSMUSG00000026090.16, exon 2 of 4) protein_coding-exon (ENSMUSG00000026090.16, exon 2 of 4) 257 ENSMUSG00000089767.1 ENSMUSG00000089767 ENSMUST00000160659 4930556I23Rik antisense Interval_12623 chr10 3958397 3959097 + 0 NA intron (ENSMUSG00000040624.18, intron 15 of 15) protein_coding-intron (ENSMUSG00000040624.18, intron 15 of 15) -11656 ENSMUSG00000082605.1 ENSMUSG00000082605 ENSMUST00000119653 Gm16148 processed_pseudogene Interval_122067 chr5 15914931 15915148 + 0 NA Intergenic Intergenic -14552 ENSMUSG00000105310.1 ENSMUSG00000105310 ENSMUST00000197410 Gm42451 processed_pseudogene Interval_171622 chr9 119623838 119624186 + 0 NA intron (ENSMUSG00000034533.10, intron 21 of 26) protein_coding-intron (ENSMUSG00000034533.10, intron 22 of 27) -60509 ENSMUSG00000032511.17 ENSMUSG00000032511 ENSMUST00000138934 Scn5a protein_coding Interval_118308 chr4 130195592 130196541 + 0 NA Intergenic Intergenic 13790 ENSMUSG00000023120.9 ENSMUSG00000023120 ENSMUST00000023884 Ldc1 protein_coding Interval_150978 chr7 117240933 117241397 + 0 NA intron (ENSMUSG00000108303.1, intron 1 of 3) lincRNA-intron (ENSMUSG00000108303.1, intron 1 of 3) 11558 ENSMUSG00000108303.1 ENSMUSG00000108303 ENSMUST00000206031 Gm39075 lincRNA Interval_36621 chr12 51569468 51570424 + 0 NA Intergenic Intergenic -23433 ENSMUSG00000020953.17 ENSMUSG00000020953 ENSMUST00000220173 Coch protein_coding Interval_1721 chr1 32597653 32597907 + 0 NA intron (ENSMUSG00000026058.11, intron 6 of 8) protein_coding-intron (ENSMUSG00000026058.11, intron 6 of 8) -29359 ENSMUSG00000089489.1 ENSMUSG00000089489 ENSMUST00000158864 Gm24732 snRNA Interval_88188 chr19 60506530 60506852 + 0 NA Intergenic Intergenic 30858 ENSMUSG00000033417.16 ENSMUSG00000033417 ENSMUST00000237682 Cacul1 protein_coding Interval_135916 chr6 48646986 48647712 + 0 NA promoter-TSS (ENSMUSG00000064262.7) protein_coding-promoter-TSS (ENSMUSG00000064262.7) -35 ENSMUSG00000064262.7 ENSMUSG00000064262 ENSMUST00000203509 Gimap8 protein_coding Interval_64364 chr16 10853081 10854693 + 0 NA intron (ENSMUSG00000037991.9, intron 1 of 5) protein_coding-intron (ENSMUSG00000037991.9, intron 1 of 5) 18819 ENSMUSG00000037991.9 ENSMUSG00000037991 ENSMUST00000181721 Rmi2 protein_coding Interval_148155 chr7 79520184 79520630 + 0 NA intron (ENSMUSG00000097023.8, intron 1 of 1) lincRNA-intron (ENSMUSG00000097023.8, intron 1 of 1) 3525 ENSMUSG00000103831.1 ENSMUSG00000103831 ENSMUST00000195696 Gm37608 TEC Interval_68346 chr16 73787150 73787401 + 0 NA Intergenic Intergenic 174585 ENSMUSG00000052516.19 ENSMUSG00000052516 ENSMUST00000156010 Robo2 protein_coding Interval_57251 chr15 8131905 8132225 + 0 NA intron (ENSMUSG00000022142.8, intron 15 of 33) protein_coding-intron (ENSMUSG00000022142.8, intron 15 of 34) -19018 ENSMUSG00000022142.8 ENSMUSG00000022142 ENSMUST00000230647 Nup155 protein_coding Interval_99238 chr2 158323112 158323286 + 0 NA intron (ENSMUSG00000016024.9, intron 5 of 5) protein_coding-intron (ENSMUSG00000016024.9, intron 9 of 14) 16706 ENSMUSG00000016024.9 ENSMUSG00000016024 ENSMUST00000129811 Lbp protein_coding Interval_110720 chr4 6989399 6992009 + 0 NA promoter-TSS (ENSMUSG00000041272.11) protein_coding-promoter-TSS (ENSMUSG00000041272.11) -221 ENSMUSG00000041272.11 ENSMUSG00000041272 ENSMUST00000150082 Tox protein_coding Interval_74007 chr17 45997622 45999219 + 0 NA Intergenic Intergenic 26444 ENSMUSG00000023951.18 ENSMUSG00000023951 ENSMUST00000146149 Vegfa protein_coding Interval_154776 chr8 23268047 23268740 + 0 NA Intergenic Intergenic -11327 ENSMUSG00000015341.17 ENSMUSG00000015341 ENSMUST00000211602 Golga7 protein_coding Interval_27946 chr11 71293248 71294250 + 0 NA Intergenic Intergenic -5191 ENSMUSG00000096455.1 ENSMUSG00000096455 ENSMUST00000104152 Gm23311 snoRNA Interval_16383 chr10 62658234 62658750 + 0 NA TTS (ENSMUSG00000036923.12) protein_coding-TTS (ENSMUSG00000036923.12) -10711 ENSMUSG00000020076.7 ENSMUSG00000020076 ENSMUST00000218224 Ddx50 protein_coding Interval_19417 chr10 99084586 99085552 + 0 NA Intergenic Intergenic -22715 ENSMUSG00000019952.15 ENSMUSG00000019952 ENSMUST00000162847 Poc1b protein_coding Interval_66687 chr16 36127756 36128545 + 0 NA intron (ENSMUSG00000034362.7, intron 1 of 2) protein_coding-intron (ENSMUSG00000034362.7, intron 1 of 2) 3055 ENSMUSG00000034362.7 ENSMUSG00000034362 ENSMUST00000161638 Csta1 protein_coding Interval_29260 chr11 82403841 82404206 + 0 NA intron (ENSMUSG00000020701.12, intron 1 of 1) protein_coding-intron (ENSMUSG00000020701.12, intron 1 of 8) -16683 ENSMUSG00000113710.1 ENSMUSG00000113710 ENSMUST00000221531 Gm38577 lincRNA Interval_135358 chr6 38597272 38598055 + 0 NA intron (ENSMUSG00000029823.16, intron 8 of 8) protein_coding-intron (ENSMUSG00000029823.16, intron 7 of 9) 39570 ENSMUSG00000071537.6 ENSMUSG00000071537 ENSMUST00000201345 Klrg2 protein_coding Interval_44228 chr13 42498002 42498827 + 0 NA Intergenic Intergenic -25637 ENSMUSG00000113000.1 ENSMUSG00000113000 ENSMUST00000222369 Gm6049 processed_pseudogene Interval_43745 chr13 35958213 35958799 + 0 NA promoter-TSS (ENSMUSG00000050423.11) protein_coding-promoter-TSS (ENSMUSG00000050423.11) -333 ENSMUSG00000050423.11 ENSMUSG00000050423 ENSMUST00000172766 Ppp1r3g protein_coding Interval_31083 chr11 98040941 98041306 + 0 NA intron (ENSMUSG00000017400.10, intron 4 of 6) protein_coding-intron (ENSMUSG00000017400.10, intron 7 of 10) 2419 ENSMUSG00000017400.10 ENSMUSG00000017400 ENSMUST00000131519 Stac2 protein_coding Interval_5679 chr1 90857831 90858211 + 0 NA Intergenic Intergenic 13398 ENSMUSG00000103978.1 ENSMUSG00000103978 ENSMUST00000194161 4930474B08Rik TEC Interval_107557 chr3 108488692 108488975 + 0 NA exon (ENSMUSG00000040412.17, exon 2 of 21) protein_coding-exon (ENSMUSG00000040412.17, exon 2 of 21) -9285 ENSMUSG00000080673.1 ENSMUSG00000080673 ENSMUST00000117023 Gm23336 snRNA Interval_26128 chr11 54642337 54642821 + 0 NA intron (ENSMUSG00000037533.20, intron 5 of 17) protein_coding-intron (ENSMUSG00000037533.20, intron 7 of 16) 15994 ENSMUSG00000093341.2 ENSMUSG00000093341 ENSMUST00000175600 Gm26116 miRNA Interval_118488 chr4 131993935 131994280 + 0 NA intron (ENSMUSG00000028906.17, intron 5 of 14) protein_coding-intron (ENSMUSG00000028906.17, intron 5 of 20) -1818 ENSMUSG00000098577.1 ENSMUSG00000098577 ENSMUST00000184484 Gm27445 miRNA Interval_97534 chr2 139381731 139382093 + 0 NA intron (ENSMUSG00000085071.1, intron 2 of 5) processed_transcript-intron (ENSMUSG00000085071.1, intron 2 of 5) 2428 ENSMUSG00000081799.1 ENSMUSG00000081799 ENSMUST00000117817 Gm14071 processed_pseudogene Interval_13374 chr10 17528021 17529012 + 0 NA Intergenic Intergenic -1602 ENSMUSG00000111927.1 ENSMUSG00000111927 ENSMUST00000220318 Gm47770 lincRNA Interval_36759 chr12 53218244 53218671 + 0 NA Intergenic Intergenic -29700 ENSMUSG00000021010.9 ENSMUSG00000021010 ENSMUST00000223057 Npas3 protein_coding Interval_78039 chr18 7297600 7298052 + 0 NA promoter-TSS (ENSMUSG00000061802.6) protein_coding-promoter-TSS (ENSMUSG00000061802.6) -113753 ENSMUSG00000061802.6 ENSMUSG00000061802 ENSMUST00000234196 Armc4 protein_coding Interval_65816 chr16 29303045 29303356 + 0 NA intron (ENSMUSG00000048939.13, intron 13 of 28) protein_coding-intron (ENSMUSG00000048939.13, intron 14 of 29) -18841 ENSMUSG00000083141.1 ENSMUSG00000083141 ENSMUST00000117427 Gm15752 processed_pseudogene Interval_135425 chr6 39314860 39315089 + 0 NA Intergenic Intergenic -49032 ENSMUSG00000089422.1 ENSMUSG00000089422 ENSMUST00000158797 Gm26008 snRNA Interval_54018 chr14 64539210 64539699 + 0 NA Intergenic Intergenic -1916 ENSMUSG00000114680.1 ENSMUSG00000114680 ENSMUST00000223738 Gm47202 lincRNA Interval_51965 chr14 34316043 34317145 + 0 NA intron (ENSMUSG00000021794.16, intron 1 of 12) protein_coding-intron (ENSMUSG00000021794.16, intron 1 of 12) -6209 ENSMUSG00000041471.9 ENSMUSG00000041471 ENSMUST00000228132 Shld2 protein_coding Interval_170891 chr9 111636194 111636542 + 0 NA intron (ENSMUSG00000032502.8, intron 1 of 10) protein_coding-intron (ENSMUSG00000032502.8, intron 1 of 10) -22353 ENSMUSG00000077156.1 ENSMUSG00000077156 ENSMUST00000103968 n-R5s90 rRNA Interval_142383 chr6 141277926 141278443 + 0 NA intron (ENSMUSG00000041741.10, intron 1 of 5) protein_coding-intron (ENSMUSG00000041741.10, intron 1 of 15) -28175 ENSMUSG00000100707.1 ENSMUSG00000100707 ENSMUST00000190040 Gm28523 antisense Interval_1812 chr1 33961318 33961642 + 0 NA intron (ENSMUSG00000026131.20, intron 2 of 102) protein_coding-intron (ENSMUSG00000026131.20, intron 2 of 102) 2205 ENSMUSG00000099382.1 ENSMUSG00000099382 ENSMUST00000190740 Gm28631 processed_pseudogene Interval_8187 chr1 136364849 136365600 + 0 NA Intergenic Intergenic 50270 ENSMUSG00000097403.2 ENSMUSG00000097403 ENSMUST00000194227 9230116N13Rik processed_transcript Interval_77080 chr17 86322839 86323082 + 0 NA intron (ENSMUSG00000045038.14, intron 1 of 14) protein_coding-intron (ENSMUSG00000045038.14, intron 2 of 15) -35782 ENSMUSG00000100738.1 ENSMUSG00000100738 ENSMUST00000191222 2010106C02Rik antisense Interval_83090 chr18 81196872 81199168 + 0 NA Intergenic Intergenic 38046 ENSMUSG00000097181.1 ENSMUSG00000097181 ENSMUST00000181204 4930594M17Rik lincRNA Interval_87748 chr19 55613102 55613312 + 0 NA intron (ENSMUSG00000024983.10, intron 8 of 8) protein_coding-intron (ENSMUSG00000024983.10, intron 7 of 7) -129057 ENSMUSG00000024985.20 ENSMUSG00000024985 ENSMUST00000148666 Tcf7l2 protein_coding Interval_8059 chr1 135498595 135498853 + 0 NA intron (ENSMUSG00000009418.16, intron 6 of 30) protein_coding-intron (ENSMUSG00000009418.16, intron 3 of 29) -17310 ENSMUSG00000102474.1 ENSMUSG00000102474 ENSMUST00000193434 2610012C04Rik TEC Interval_161178 chr8 118182607 118183253 + 0 NA Intergenic Intergenic 61976 ENSMUSG00000065028.1 ENSMUSG00000065028 ENSMUST00000083094 Gm25200 snoRNA Interval_81333 chr18 58196457 58197212 + 0 NA intron (ENSMUSG00000024598.9, intron 4 of 11) protein_coding-intron (ENSMUSG00000024598.9, intron 4 of 64) 13092 ENSMUSG00000024598.9 ENSMUSG00000024598 ENSMUST00000235779 Fbn2 protein_coding Interval_104266 chr3 62409193 62410803 + 0 NA intron (ENSMUSG00000036885.14, intron 5 of 13) protein_coding-intron (ENSMUSG00000036885.14, intron 5 of 13) -17182 ENSMUSG00000036885.14 ENSMUSG00000036885 ENSMUST00000192138 Arhgef26 protein_coding Interval_120528 chr4 149160046 149161449 + 0 NA promoter-TSS (ENSMUSG00000028961.15) protein_coding-promoter-TSS (ENSMUSG00000028961.15) 6024 ENSMUSG00000028961.15 ENSMUSG00000028961 ENSMUST00000143944 Pgd protein_coding Interval_131839 chr5 140281154 140282986 + 0 NA intron (ENSMUSG00000029554.15, intron 9 of 16) protein_coding-intron (ENSMUSG00000029554.15, intron 9 of 17) -39586 ENSMUSG00000036639.12 ENSMUSG00000036639 ENSMUST00000145898 Nudt1 protein_coding Interval_16693 chr10 67061405 67063111 + 0 NA intron (ENSMUSG00000019873.8, intron 2 of 8) protein_coding-intron (ENSMUSG00000019873.8, intron 2 of 7) -24936 ENSMUSG00000019873.8 ENSMUSG00000019873 ENSMUST00000219431 Reep3 protein_coding Interval_32709 chr11 109886674 109887446 + 0 NA Intergenic Intergenic 41182 ENSMUSG00000087393.1 ENSMUSG00000087393 ENSMUST00000143247 1700023C21Rik lincRNA Interval_133235 chr5 150744821 150745073 + 0 NA intron (ENSMUSG00000034021.15, intron 10 of 34) protein_coding-intron (ENSMUSG00000034021.15, intron 10 of 34) -7146 ENSMUSG00000107048.1 ENSMUSG00000107048 ENSMUST00000200678 Gm43807 sense_intronic Interval_74673 chr17 55857026 55857468 + 0 NA Intergenic Intergenic -6118 ENSMUSG00000093740.1 ENSMUSG00000093740 ENSMUST00000176564 Gm18417 unprocessed_pseudogene Interval_51874 chr14 33246393 33247146 + 0 NA intron (ENSMUSG00000063506.14, intron 2 of 10) protein_coding-intron (ENSMUSG00000063506.14, intron 2 of 10) -25838 ENSMUSG00000115597.1 ENSMUSG00000115597 ENSMUST00000226933 Gm49030 antisense Interval_128684 chr5 114699486 114700256 + 0 NA Intergenic Intergenic -8930 ENSMUSG00000011884.13 ENSMUSG00000011884 ENSMUST00000112212 Gltp protein_coding Interval_100470 chr2 169239516 169240627 + 0 NA Intergenic Intergenic 5080 ENSMUSG00000085369.1 ENSMUSG00000085369 ENSMUST00000152494 9430093N23Rik lincRNA Interval_54873 chr14 75930923 75931872 + 0 NA intron (ENSMUSG00000067995.4, intron 5 of 7) protein_coding-intron (ENSMUSG00000067995.4, intron 5 of 7) -23612 ENSMUSG00000046523.5 ENSMUSG00000046523 ENSMUST00000050120 Kctd4 protein_coding Interval_49462 chr13 112238287 112239035 + 0 NA Intergenic Intergenic 19468 ENSMUSG00000104438.1 ENSMUSG00000104438 ENSMUST00000192356 Gm37427 TEC Interval_62341 chr15 90571208 90571459 + 0 NA intron (ENSMUSG00000052560.15, intron 7 of 18) protein_coding-intron (ENSMUSG00000052560.15, intron 8 of 19) 9986 ENSMUSG00000078847.1 ENSMUSG00000078847 ENSMUST00000108774 Gm6746 processed_pseudogene Interval_3622 chr1 60056285 60057125 + 0 NA Intergenic Intergenic -13583 ENSMUSG00000026018.12 ENSMUSG00000026018 ENSMUST00000186970 Ica1l protein_coding Interval_109522 chr3 143786740 143787335 + 0 NA intron (ENSMUSG00000105324.1, intron 1 of 5) lincRNA-intron (ENSMUSG00000105324.1, intron 1 of 5) 16498 ENSMUSG00000106524.1 ENSMUSG00000106524 ENSMUST00000199733 Gm42706 lincRNA Interval_14446 chr10 33904729 33906464 + 0 NA exon (ENSMUSG00000039552.14, exon 1 of 6) protein_coding-exon (ENSMUSG00000039552.14, exon 1 of 6) 485 ENSMUSG00000039552.14 ENSMUSG00000039552 ENSMUST00000169670 Rsph4a protein_coding Interval_4283 chr1 72377616 72378936 + 0 NA intron (ENSMUSG00000026187.9, intron 16 of 20) protein_coding-intron (ENSMUSG00000026187.9, intron 16 of 20) 70849 ENSMUSG00000026187.9 ENSMUSG00000026187 ENSMUST00000027379 Xrcc5 protein_coding Interval_54388 chr14 68151067 68151975 + 0 NA Intergenic Intergenic 15553 ENSMUSG00000087772.1 ENSMUSG00000087772 ENSMUST00000157147 Gm22319 snoRNA Interval_62530 chr15 94411694 94412010 + 0 NA intron (ENSMUSG00000022449.14, intron 2 of 3) protein_coding-intron (ENSMUSG00000022449.14, intron 2 of 3) -7594 ENSMUSG00000022449.14 ENSMUSG00000022449 ENSMUST00000128797 Adamts20 protein_coding Interval_167184 chr9 65998870 65999381 + 0 NA intron (ENSMUSG00000032384.16, intron 3 of 4) protein_coding-intron (ENSMUSG00000032384.16, intron 5 of 13) 40709 ENSMUSG00000032384.16 ENSMUSG00000032384 ENSMUST00000205489 Csnk1g1 protein_coding Interval_171796 chr9 121259134 121260573 + 0 NA intron (ENSMUSG00000040936.15, intron 8 of 36) protein_coding-intron (ENSMUSG00000040936.15, intron 8 of 33) 12536 ENSMUSG00000091336.1 ENSMUSG00000091336 ENSMUST00000172397 Gm17157 processed_pseudogene Interval_104711 chr3 69632791 69633987 + 0 NA Intergenic Intergenic -28377 ENSMUSG00000102342.1 ENSMUSG00000102342 ENSMUST00000193752 Gm37380 processed_pseudogene Interval_143927 chr7 17987701 17988256 + 0 NA Intergenic Intergenic 15854 ENSMUSG00000030368.10 ENSMUSG00000030368 ENSMUST00000094799 Ceacam11 protein_coding Interval_88887 chr2 12077382 12078754 + 0 NA Intergenic Intergenic 5924 ENSMUSG00000080801.2 ENSMUSG00000080801 ENSMUST00000120962 Gm13310 processed_pseudogene Interval_8244 chr1 136694830 136696629 + 0 NA promoter-TSS (ENSMUSG00000097448.1) lincRNA-promoter-TSS (ENSMUSG00000097448.1) -482 ENSMUSG00000097448.1 ENSMUSG00000097448 ENSMUST00000181274 Platr22 lincRNA Interval_126999 chr5 99379081 99379667 + 0 NA intron (ENSMUSG00000089809.9, intron 3 of 16) protein_coding-intron (ENSMUSG00000089809.9, intron 2 of 3) 105279 ENSMUSG00000105686.1 ENSMUSG00000105686 ENSMUST00000196434 Gm35394 lincRNA Interval_76556 chr17 81045567 81046225 + 0 NA intron (ENSMUSG00000024246.9, intron 5 of 10) protein_coding-intron (ENSMUSG00000024246.9, intron 5 of 9) 19186 ENSMUSG00000024246.9 ENSMUSG00000024246 ENSMUST00000234801 Thumpd2 protein_coding Interval_171532 chr9 119063223 119064898 + 0 NA intron (ENSMUSG00000038775.14, intron 10 of 17) protein_coding-intron (ENSMUSG00000038775.14, intron 11 of 19) 605 ENSMUSG00000038775.14 ENSMUSG00000038775 ENSMUST00000151638 Vill protein_coding Interval_18704 chr10 89461422 89462496 + 0 NA intron (ENSMUSG00000047638.15, intron 8 of 9) protein_coding-intron (ENSMUSG00000047638.15, intron 7 of 8) -28117 ENSMUSG00000074802.11 ENSMUSG00000074802 ENSMUST00000219073 Gas2l3 protein_coding Interval_12476 chr1 193875652 193876032 + 0 NA Intergenic Intergenic 8833 ENSMUSG00000104182.1 ENSMUSG00000104182 ENSMUST00000194272 Gm21362 processed_pseudogene Interval_53664 chr14 60727138 60728078 + 0 NA intron (ENSMUSG00000021990.16, intron 3 of 6) protein_coding-intron (ENSMUSG00000021990.16, intron 4 of 12) -5298 ENSMUSG00000021990.16 ENSMUSG00000021990 ENSMUST00000162939 Spata13 protein_coding Interval_174548 chrX 157563378 157564065 + 0 NA intron (ENSMUSG00000046873.18, intron 5 of 10) protein_coding-intron (ENSMUSG00000046873.18, intron 5 of 10) 5264 ENSMUSG00000091736.3 ENSMUSG00000091736 ENSMUST00000065806 Yy2 protein_coding Interval_66074 chr16 31435121 31435606 + 0 NA promoter-TSS (ENSMUSG00000046598.15) protein_coding-promoter-TSS (ENSMUSG00000046598.15) -5587 ENSMUSG00000086645.2 ENSMUSG00000086645 ENSMUST00000182690 Gm15743 antisense Interval_127016 chr5 99627184 99627520 + 0 NA TTS (ENSMUSG00000090146.1) antisense-TTS (ENSMUSG00000090146.1) 1516 ENSMUSG00000090146.1 ENSMUSG00000090146 ENSMUST00000159244 4930405H06Rik antisense Interval_46570 chr13 67268629 67270135 + 0 NA promoter-TSS (ENSMUSG00000055480.7) protein_coding-promoter-TSS (ENSMUSG00000055480.7) 9084 ENSMUSG00000055480.7 ENSMUSG00000055480 ENSMUST00000224648 Zfp458 protein_coding Interval_122416 chr5 22364390 22365183 + 0 NA Intergenic Intergenic -5509 ENSMUSG00000088578.1 ENSMUSG00000088578 ENSMUST00000157953 Gm25459 snoRNA Interval_121148 chr4 153524721 153524957 + 0 NA Intergenic Intergenic -42660 ENSMUSG00000039546.9 ENSMUSG00000039546 ENSMUST00000149177 Ajap1 protein_coding Interval_1987 chr1 35673701 35674517 + 0 NA Intergenic Intergenic -22812 ENSMUSG00000104417.1 ENSMUSG00000104417 ENSMUST00000195168 Gm37068 lincRNA Interval_151094 chr7 118513459 118513841 + 0 NA intron (ENSMUSG00000030652.11, intron 6 of 6) protein_coding-intron (ENSMUSG00000030652.11, intron 6 of 6) 19647 ENSMUSG00000030652.11 ENSMUSG00000030652 ENSMUST00000127700 Coq7 protein_coding Interval_157041 chr8 64725351 64726542 + 0 NA exon (ENSMUSG00000031604.10, exon 2 of 2) protein_coding-exon (ENSMUSG00000031604.10, exon 2 of 2) 5113 ENSMUSG00000031604.10 ENSMUSG00000031604 ENSMUST00000141021 Msmo1 protein_coding Interval_3214 chr1 54930748 54931566 + 0 NA Intergenic Intergenic -14563 ENSMUSG00000102642.1 ENSMUSG00000102642 ENSMUST00000193052 A130048G24Rik TEC Interval_167999 chr9 75339570 75339828 + 0 NA intron (ENSMUSG00000110824.1, intron 1 of 2) protein_coding-intron (ENSMUSG00000032192.9, intron 8 of 11) 3143 ENSMUSG00000110824.1 ENSMUSG00000110824 ENSMUST00000213336 Gm48677 antisense Interval_76430 chr17 80151409 80151929 + 0 NA intron (ENSMUSG00000035473.10, intron 2 of 3) protein_coding-intron (ENSMUSG00000035473.10, intron 4 of 6) 6517 ENSMUSG00000035473.10 ENSMUSG00000035473 ENSMUST00000133955 Galm protein_coding Interval_94029 chr2 81061471 81061671 + 0 NA Intergenic Intergenic -77382 ENSMUSG00000065261.1 ENSMUSG00000065261 ENSMUST00000083327 Gm23452 snRNA Interval_79486 chr18 32270840 32272076 + 0 NA Intergenic Intergenic -21892 ENSMUSG00000089529.1 ENSMUSG00000089529 ENSMUST00000158904 Gm22325 misc_RNA Interval_171658 chr9 119991322 119991838 + 0 NA intron (ENSMUSG00000052336.7, intron 2 of 2) protein_coding-intron (ENSMUSG00000052336.7, intron 2 of 2) -7801 ENSMUSG00000032515.8 ENSMUSG00000032515 ENSMUST00000216929 Csrnp1 protein_coding Interval_24451 chr11 33363226 33363431 + 0 NA intron (ENSMUSG00000040594.19, intron 2 of 9) protein_coding-intron (ENSMUSG00000040594.19, intron 14 of 27) 31938 ENSMUSG00000069913.3 ENSMUSG00000069913 ENSMUST00000118265 Anp32-ps processed_pseudogene Interval_56711 chr14 121566055 121567447 + 0 NA intron (ENSMUSG00000025558.19, intron 45 of 55) protein_coding-intron (ENSMUSG00000025558.19, intron 46 of 53) 43207 ENSMUSG00000115408.1 ENSMUSG00000115408 ENSMUST00000226518 Gm4529 processed_pseudogene Interval_95922 chr2 118430418 118432022 + 0 NA exon (ENSMUSG00000005102.13, exon 12 of 39) protein_coding-exon (ENSMUSG00000005102.13, exon 12 of 39) -25940 ENSMUSG00000005102.13 ENSMUSG00000005102 ENSMUST00000125281 Eif2ak4 protein_coding Interval_38964 chr12 84161238 84162301 + 0 NA intron (ENSMUSG00000042507.15, intron 4 of 12) protein_coding-intron (ENSMUSG00000042507.15, intron 4 of 12) -13280 ENSMUSG00000054383.2 ENSMUSG00000054383 ENSMUST00000061425 Pnma1 protein_coding Interval_91949 chr2 51971912 51973586 + 0 NA intron (ENSMUSG00000026946.9, intron 1 of 4) protein_coding-intron (ENSMUSG00000026946.9, intron 1 of 7) 745 ENSMUSG00000026946.9 ENSMUSG00000026946 ENSMUST00000123521 Nmi protein_coding Interval_86038 chr19 35323623 35324315 + 0 NA Intergenic Intergenic -47447 ENSMUSG00000093373.1 ENSMUSG00000093373 ENSMUST00000175632 Gm23075 miRNA Interval_126372 chr5 87526602 87526806 + 0 NA intron (ENSMUSG00000029269.11, intron 3 of 6) protein_coding-intron (ENSMUSG00000029269.11, intron 4 of 7) 8442 ENSMUSG00000029269.11 ENSMUSG00000029269 ENSMUST00000120150 Sult1b1 protein_coding Interval_119553 chr4 138344940 138345134 + 0 NA intron (ENSMUSG00000028755.3, intron 2 of 3) protein_coding-intron (ENSMUSG00000028755.3, intron 2 of 3) -1388 ENSMUSG00000028755.3 ENSMUSG00000028755 ENSMUST00000030535 Cda protein_coding Interval_84509 chr19 11983859 11984065 + 0 NA exon (ENSMUSG00000024687.11, exon 8 of 14) protein_coding-exon (ENSMUSG00000024687.11, exon 8 of 14) 18021 ENSMUSG00000024687.11 ENSMUSG00000024687 ENSMUST00000025590 Osbp protein_coding Interval_57073 chr15 5613641 5613967 + 0 NA Intergenic Intergenic -100230 ENSMUSG00000115185.1 ENSMUSG00000115185 ENSMUST00000226984 Gm18715 processed_pseudogene Interval_91581 chr2 43913759 43914211 + 0 NA intron (ENSMUSG00000049744.15, intron 6 of 14) protein_coding-intron (ENSMUSG00000049744.15, intron 6 of 13) 151339 ENSMUSG00000085089.1 ENSMUSG00000085089 ENSMUST00000139948 Arhgap15os antisense Interval_51722 chr14 31640543 31641947 + 0 NA promoter-TSS (ENSMUSG00000021884.18) protein_coding-promoter-TSS (ENSMUSG00000021884.18) 217 ENSMUSG00000021900.10 ENSMUSG00000021900 ENSMUST00000090147 Btd protein_coding Interval_110770 chr4 8197873 8198416 + 0 NA intron (ENSMUSG00000041261.9, intron 3 of 8) protein_coding-intron (ENSMUSG00000041261.9, intron 3 of 8) -30791 ENSMUSG00000079993.2 ENSMUSG00000079993 ENSMUST00000116110 Gm11799 processed_pseudogene Interval_151742 chr7 126358725 126360257 + 0 NA Intergenic Intergenic -7894 ENSMUSG00000108417.1 ENSMUSG00000108417 ENSMUST00000205858 Gm30928 lincRNA Interval_154288 chr8 14052676 14053723 + 0 NA intron (ENSMUSG00000051978.9, intron 3 of 4) protein_coding-intron (ENSMUSG00000051978.9, intron 3 of 5) 14619 ENSMUSG00000109982.1 ENSMUSG00000109982 ENSMUST00000210109 Gm45520 TEC Interval_145665 chr7 37019585 37020579 + 0 NA Intergenic Intergenic 108610 ENSMUSG00000101342.1 ENSMUSG00000101342 ENSMUST00000190381 Gm28078 lincRNA Interval_117561 chr4 124677560 124677762 + 0 NA TTS (ENSMUSG00000028907.7) protein_coding-TTS (ENSMUSG00000028907.7) 15873 ENSMUSG00000028907.7 ENSMUSG00000028907 ENSMUST00000153088 Utp11 protein_coding Interval_55305 chr14 81796815 81798251 + 0 NA Intergenic Intergenic -41637 ENSMUSG00000115175.1 ENSMUSG00000115175 ENSMUST00000228131 Gm18525 processed_pseudogene Interval_12464 chr1 193698613 193699148 + 0 NA Intergenic Intergenic -168129 ENSMUSG00000104182.1 ENSMUSG00000104182 ENSMUST00000194272 Gm21362 processed_pseudogene Interval_99593 chr2 163428132 163428736 + 0 NA Intergenic Intergenic -3737 ENSMUSG00000035399.12 ENSMUSG00000035399 ENSMUST00000123659 Oser1 protein_coding Interval_84728 chr19 15981977 15982274 + 0 NA intron (ENSMUSG00000041491.8, intron 1 of 13) protein_coding-intron (ENSMUSG00000041491.8, intron 1 of 14) 2568 ENSMUSG00000041491.8 ENSMUSG00000041491 ENSMUST00000236749 Cep78 protein_coding Interval_150359 chr7 109881705 109882456 + 0 NA Intergenic Intergenic 15476 ENSMUSG00000035901.14 ENSMUSG00000035901 ENSMUST00000151923 Dennd5a protein_coding Interval_144783 chr7 28215649 28215950 + 0 NA Intergenic Intergenic -10559 ENSMUSG00000108968.1 ENSMUSG00000108968 ENSMUST00000207620 Gm45011 TEC Interval_107162 chr3 104078569 104079152 + 0 NA exon (ENSMUSG00000106371.1, exon 1 of 1) sense_intronic-exon (ENSMUSG00000106371.1, exon 1 of 1) 642 ENSMUSG00000106371.1 ENSMUSG00000106371 ENSMUST00000197819 9530097N15Rik sense_intronic Interval_20968 chr10 122869614 122871048 + 0 NA intron (ENSMUSG00000034613.12, intron 5 of 5) protein_coding-intron (ENSMUSG00000034613.12, intron 5 of 9) -25037 ENSMUSG00000034613.12 ENSMUSG00000034613 ENSMUST00000162969 Ppm1h protein_coding Interval_35543 chr12 24639171 24639614 + 0 NA promoter-TSS (ENSMUSG00000066553.5) processed_pseudogene-promoter-TSS (ENSMUSG00000066553.5) -382 ENSMUSG00000066553.5 ENSMUSG00000066553 ENSMUST00000140065 Gm6969 processed_pseudogene Interval_35935 chr12 32144507 32144776 + 0 NA Intergenic Intergenic -20939 ENSMUSG00000112071.1 ENSMUSG00000112071 ENSMUST00000218836 5430401H09Rik lincRNA Interval_6560 chr1 116560415 116560764 + 0 NA intron (ENSMUSG00000070695.4, intron 21 of 23) protein_coding-intron (ENSMUSG00000070695.4, intron 21 of 23) -73188 ENSMUSG00000102033.1 ENSMUSG00000102033 ENSMUST00000185884 Gm28263 processed_pseudogene Interval_59201 chr15 47910349 47910619 + 0 NA intron (ENSMUSG00000022311.15, intron 23 of 70) protein_coding-intron (ENSMUSG00000022311.15, intron 23 of 70) 109811 ENSMUSG00000077752.1 ENSMUSG00000077752 ENSMUST00000104564 Gm23530 snoRNA Interval_60518 chr15 74595098 74596049 + 0 NA Intergenic Intergenic 7649 ENSMUSG00000034730.17 ENSMUSG00000034730 ENSMUST00000230935 Adgrb1 protein_coding Interval_100671 chr2 171120513 171120793 + 0 NA Intergenic Intergenic -94846 ENSMUSG00000084818.1 ENSMUSG00000084818 ENSMUST00000145800 Gm14640 lincRNA Interval_100385 chr2 168745207 168745486 + 0 NA Intergenic Intergenic -3382 ENSMUSG00000027546.15 ENSMUSG00000027546 ENSMUST00000156555 Atp9a protein_coding Interval_115356 chr4 97991674 97992032 + 0 NA intron (ENSMUSG00000028565.18, intron 3 of 3) protein_coding-intron (ENSMUSG00000028565.18, intron 2 of 9) 158408 ENSMUSG00000081096.2 ENSMUSG00000081096 ENSMUST00000120186 Gm12691 transcribed_processed_pseudogene Interval_62248 chr15 89159848 89160777 + 0 NA TTS (ENSMUSG00000036606.17) protein_coding-TTS (ENSMUSG00000036606.17) -1861 ENSMUSG00000036606.17 ENSMUSG00000036606 ENSMUST00000131062 Plxnb2 protein_coding Interval_154452 chr8 17969857 17971137 + 0 NA Intergenic Intergenic 304324 ENSMUSG00000088320.1 ENSMUSG00000088320 ENSMUST00000157695 Gm25665 snoRNA Interval_162927 chr9 13478686 13478918 + 0 NA intron (ENSMUSG00000031925.17, intron 1 of 4) protein_coding-intron (ENSMUSG00000031925.17, intron 1 of 4) -32049 ENSMUSG00000090592.2 ENSMUSG00000090592 ENSMUST00000167906 Gm17571 protein_coding Interval_864 chr1 12781955 12782151 + 0 NA intron (ENSMUSG00000016918.15, intron 2 of 3) protein_coding-intron (ENSMUSG00000016918.15, intron 2 of 21) 62589 ENSMUSG00000016918.15 ENSMUSG00000016918 ENSMUST00000185780 Sulf1 protein_coding Interval_111238 chr4 15467761 15468342 + 0 NA Intergenic Intergenic -18315 ENSMUSG00000080869.1 ENSMUSG00000080869 ENSMUST00000118712 Gm11856 processed_pseudogene Interval_143624 chr7 13312759 13313916 + 0 NA Intergenic Intergenic -11318 ENSMUSG00000033847.15 ENSMUSG00000033847 ENSMUST00000043612 Pla2g4c protein_coding Interval_120786 chr4 150643861 150645191 + 0 NA promoter-TSS (ENSMUSG00000039838.11) protein_coding-promoter-TSS (ENSMUSG00000039838.11) -437 ENSMUSG00000039838.11 ENSMUSG00000039838 ENSMUST00000147706 Slc45a1 protein_coding Interval_148144 chr7 79472885 79474286 + 0 NA Intergenic Intergenic 7176 ENSMUSG00000108599.1 ENSMUSG00000108599 ENSMUST00000205285 Gm10616 TEC Interval_22969 chr11 18146736 18148071 + 0 NA Intergenic Intergenic 51417 ENSMUSG00000085453.1 ENSMUSG00000085453 ENSMUST00000150694 Gm12018 lincRNA Interval_110909 chr4 10047735 10047950 + 0 NA Intergenic Intergenic 88488 ENSMUSG00000082501.1 ENSMUSG00000082501 ENSMUST00000120635 Gm11835 processed_pseudogene Interval_104827 chr3 75579252 75579734 + 0 NA intron (ENSMUSG00000027834.15, intron 1 of 1) protein_coding-intron (ENSMUSG00000027834.15, intron 1 of 8) 21932 ENSMUSG00000027834.15 ENSMUSG00000027834 ENSMUST00000161695 Serpini1 protein_coding Interval_133405 chr6 4746768 4749649 + 0 NA intron (ENSMUSG00000092035.8, intron 1 of 1) protein_coding-intron (ENSMUSG00000092035.8, intron 1 of 2) 802 ENSMUSG00000092035.8 ENSMUSG00000092035 ENSMUST00000176551 Peg10 protein_coding Interval_120103 chr4 141831446 141832421 + 0 NA intron (ENSMUSG00000062478.16, intron 4 of 6) protein_coding-intron (ENSMUSG00000062478.16, intron 4 of 6) -5932 ENSMUSG00000058579.5 ENSMUSG00000058579 ENSMUST00000155826 Cela2a protein_coding Interval_114928 chr4 87102726 87103605 + 0 NA intron (ENSMUSG00000037996.17, intron 2 of 10) protein_coding-intron (ENSMUSG00000037996.17, intron 1 of 9) 127302 ENSMUSG00000037996.17 ENSMUSG00000037996 ENSMUST00000155361 Slc24a2 protein_coding Interval_49523 chr13 112681210 112681437 + 0 NA intron (ENSMUSG00000047789.5, intron 2 of 14) protein_coding-intron (ENSMUSG00000047789.5, intron 2 of 14) 4373 ENSMUSG00000114438.1 ENSMUSG00000114438 ENSMUST00000224584 Gm47827 antisense Interval_134734 chr6 31075541 31076301 + 0 NA Intergenic Intergenic -12426 ENSMUSG00000097998.1 ENSMUSG00000097998 ENSMUST00000183056 Gm27019 lincRNA Interval_26556 chr11 58840424 58840794 + 0 NA promoter-TSS (ENSMUSG00000094805.2) protein_coding-promoter-TSS (ENSMUSG00000094805.2) 1350 ENSMUSG00000094805.2 ENSMUSG00000094805 ENSMUST00000071625 Olfr311 protein_coding Interval_170399 chr9 107675505 107678405 + 0 NA promoter-TSS (ENSMUSG00000034837.12) protein_coding-promoter-TSS (ENSMUSG00000034837.12) -514 ENSMUSG00000034837.12 ENSMUSG00000034837 ENSMUST00000194153 Gnat1 protein_coding Interval_102388 chr3 23272243 23272711 + 0 NA Intergenic Intergenic 102840 ENSMUSG00000102214.1 ENSMUSG00000102214 ENSMUST00000191948 Gm37492 processed_pseudogene Interval_143508 chr7 11157944 11158394 + 0 NA Intergenic Intergenic -7673 ENSMUSG00000110066.1 ENSMUSG00000110066 ENSMUST00000209888 Gm38430 processed_pseudogene Interval_70477 chr17 10477656 10479860 + 0 NA intron (ENSMUSG00000089633.2, intron 1 of 1) protein_coding-intron (ENSMUSG00000037196.6, intron 4 of 4) -17688 ENSMUSG00000089941.1 ENSMUSG00000089941 ENSMUST00000161091 Gm16168 antisense Interval_167460 chr9 69502456 69503173 + 0 NA Intergenic Intergenic 16031 ENSMUSG00000032231.14 ENSMUSG00000032231 ENSMUST00000154591 Anxa2 protein_coding Interval_61652 chr15 83202341 83205620 + 0 NA Intergenic Intergenic -27535 ENSMUSG00000116338.1 ENSMUSG00000116338 ENSMUST00000229317 7530414M10Rik lincRNA Interval_16406 chr10 62769716 62770064 + 0 NA TTS (ENSMUSG00000020074.7) protein_coding-TTS (ENSMUSG00000020074.7) -4250 ENSMUSG00000080469.1 ENSMUSG00000080469 ENSMUST00000116819 Snord98 snoRNA Interval_173185 chrX 73938141 73939171 + 0 NA Intergenic Intergenic -7911 ENSMUSG00000031387.14 ENSMUSG00000031387 ENSMUST00000150241 Renbp protein_coding Interval_2112 chr1 36501033 36501976 + 0 NA intron (ENSMUSG00000037408.10, intron 5 of 6) protein_coding-intron (ENSMUSG00000037408.10, intron 5 of 6) -5058 ENSMUSG00000106081.1 ENSMUSG00000106081 ENSMUST00000200651 Gm47280 miRNA Interval_101973 chr3 13989006 13989310 + 0 NA intron (ENSMUSG00000039717.16, intron 1 of 6) protein_coding-intron (ENSMUSG00000039717.16, intron 1 of 7) 40604 ENSMUSG00000084684.1 ENSMUSG00000084684 ENSMUST00000122735 Gm22026 misc_RNA Interval_81982 chr18 66810981 66811182 + 0 NA Intergenic Intergenic 49425 ENSMUSG00000047259.3 ENSMUSG00000047259 ENSMUST00000057942 Mc4r protein_coding Interval_34970 chr12 15936444 15936758 + 0 NA Intergenic Intergenic 43887 ENSMUSG00000113739.1 ENSMUSG00000113739 ENSMUST00000221010 Gm48584 lincRNA Interval_51715 chr14 31605075 31605768 + 0 NA intron (ENSMUSG00000021884.18, intron 17 of 18) protein_coding-intron (ENSMUSG00000021884.18, intron 17 of 18) 35457 ENSMUSG00000115022.1 ENSMUSG00000115022 ENSMUST00000167175 Gm49387 protein_coding Interval_84413 chr19 10714602 10715383 + 0 NA TTS (ENSMUSG00000048832.9) protein_coding-TTS (ENSMUSG00000048832.9) 24010 ENSMUSG00000024669.8 ENSMUSG00000024669 ENSMUST00000237397 Cd5 protein_coding Interval_95070 chr2 103695590 103695932 + 0 NA intron (ENSMUSG00000032724.5, intron 3 of 16) protein_coding-intron (ENSMUSG00000032724.5, intron 3 of 16) -19274 ENSMUSG00000032724.5 ENSMUSG00000032724 ENSMUST00000131122 Abtb2 protein_coding Interval_115242 chr4 94745285 94746980 + 0 NA intron (ENSMUSG00000006386.15, intron 1 of 22) protein_coding-intron (ENSMUSG00000006386.15, intron 1 of 22) -58711 ENSMUSG00000006386.15 ENSMUSG00000006386 ENSMUST00000131958 Tek protein_coding Interval_24782 chr11 37460902 37461290 + 0 NA Intergenic Intergenic -197893 ENSMUSG00000087388.1 ENSMUSG00000087388 ENSMUST00000131013 Gm12128 lincRNA Interval_32113 chr11 105312535 105313853 + 0 NA intron (ENSMUSG00000020695.14, intron 1 of 2) protein_coding-intron (ENSMUSG00000020695.14, intron 1 of 19) -27638 ENSMUSG00000020695.14 ENSMUSG00000020695 ENSMUST00000151135 Mrc2 protein_coding Interval_174832 chrX 168928057 168928867 + 0 NA intron (ENSMUSG00000031355.16, intron 1 of 12) protein_coding-intron (ENSMUSG00000031355.16, intron 1 of 12) -108149 ENSMUSG00000031355.16 ENSMUSG00000031355 ENSMUST00000112127 Arhgap6 protein_coding Interval_23097 chr11 19938512 19939642 + 0 NA intron (ENSMUSG00000045671.17, intron 1 of 6) protein_coding-intron (ENSMUSG00000045671.17, intron 1 of 5) -15493 ENSMUSG00000045671.17 ENSMUSG00000045671 ENSMUST00000123036 Spred2 protein_coding Interval_80055 chr18 36992531 36994732 + 0 NA exon (ENSMUSG00000103800.1, exon 1 of 4) protein_coding-exon (ENSMUSG00000103800.1, exon 1 of 4) 1260 ENSMUSG00000103800.1 ENSMUSG00000103800 ENSMUST00000194038 Pcdha8 protein_coding Interval_95000 chr2 102876350 102876701 + 0 NA intron (ENSMUSG00000005087.17, intron 1 of 4) protein_coding-intron (ENSMUSG00000005087.17, intron 1 of 18) -21435 ENSMUSG00000065683.1 ENSMUSG00000065683 ENSMUST00000083749 Gm23731 snRNA Interval_39808 chr12 98627680 98628798 + 0 NA promoter-TSS (ENSMUSG00000021007.14) protein_coding-promoter-TSS (ENSMUSG00000021007.14) -4771 ENSMUSG00000021007.14 ENSMUSG00000021007 ENSMUST00000152482 Spata7 protein_coding Interval_136165 chr6 51612160 51614193 + 0 NA Intergenic Intergenic -8456 ENSMUSG00000094528.1 ENSMUSG00000094528 ENSMUST00000175195 Gm22914 miRNA Interval_31403 chr11 100491079 100491340 + 0 NA intron (ENSMUSG00000020917.17, intron 18 of 26) protein_coding-intron (ENSMUSG00000020917.17, intron 19 of 27) -12729 ENSMUSG00000104854.1 ENSMUSG00000104854 ENSMUST00000195956 Mir7116 miRNA Interval_155464 chr8 33754558 33754863 + 0 NA intron (ENSMUSG00000031585.13, intron 3 of 4) protein_coding-intron (ENSMUSG00000031585.13, intron 3 of 7) -6940 ENSMUSG00000094500.2 ENSMUSG00000094500 ENSMUST00000179364 Smim18 protein_coding Interval_131678 chr5 139251871 139253434 + 0 NA promoter-TSS (ENSMUSG00000025858.12) protein_coding-promoter-TSS (ENSMUSG00000025858.12) -845 ENSMUSG00000025858.12 ENSMUSG00000025858 ENSMUST00000124420 Get4 protein_coding Interval_90932 chr2 33559554 33560178 + 0 NA Intergenic Intergenic -54532 ENSMUSG00000104403.1 ENSMUSG00000104403 ENSMUST00000193312 Gm38011 TEC Interval_13514 chr10 18909463 18910194 + 0 NA Intergenic Intergenic -22799 ENSMUSG00000111318.1 ENSMUSG00000111318 ENSMUST00000214387 Gm48483 lincRNA Interval_75127 chr17 63720677 63721120 + 0 NA Intergenic Intergenic -18408 ENSMUSG00000117014.1 ENSMUSG00000117014 ENSMUST00000233403 Gm9300 processed_pseudogene Interval_25802 chr11 51809605 51810047 + 0 NA Intergenic Intergenic 46132 ENSMUSG00000020386.5 ENSMUSG00000020386 ENSMUST00000136363 Sar1b protein_coding Interval_52855 chr14 51113624 51114375 + 0 NA promoter-TSS (ENSMUSG00000072575.4) protein_coding-promoter-TSS (ENSMUSG00000072575.4) -427 ENSMUSG00000072575.4 ENSMUSG00000072575 ENSMUST00000100645 Eddm3b protein_coding Interval_77758 chr18 3262531 3262856 + 0 NA Intergenic Intergenic -74045 ENSMUSG00000097746.2 ENSMUSG00000097746 ENSMUST00000234647 Gm6225 processed_transcript Interval_38265 chr12 76795177 76796758 + 0 NA promoter-TSS (ENSMUSG00000042808.8) protein_coding-promoter-TSS (ENSMUSG00000042808.8) -470 ENSMUSG00000042808.8 ENSMUSG00000042808 ENSMUST00000220569 Gpx2 protein_coding Interval_23554 chr11 23342270 23343057 + 0 NA intron (ENSMUSG00000056342.16, intron 3 of 79) protein_coding-intron (ENSMUSG00000056342.16, intron 3 of 79) 35768 ENSMUSG00000056342.16 ENSMUSG00000056342 ENSMUST00000125701 Usp34 protein_coding Interval_4820 chr1 79760756 79762242 + 0 NA intron (ENSMUSG00000073643.11, intron 1 of 10) protein_coding-intron (ENSMUSG00000073643.11, intron 1 of 4) 239 ENSMUSG00000073643.11 ENSMUSG00000073643 ENSMUST00000125641 Wdfy1 protein_coding Interval_107272 chr3 105131844 105132123 + 0 NA Intergenic Intergenic 65139 ENSMUSG00000051788.4 ENSMUSG00000051788 ENSMUST00000070584 4930564D02Rik protein_coding Interval_157068 chr8 64941041 64942165 + 0 NA intron (ENSMUSG00000110157.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000110157.1, intron 1 of 2) 3644 ENSMUSG00000110157.1 ENSMUSG00000110157 ENSMUST00000209552 Gm32507 lincRNA Interval_25517 chr11 49450584 49452589 + 0 NA Intergenic Intergenic -3757 ENSMUSG00000063386.2 ENSMUSG00000063386 ENSMUST00000073824 Olfr1387 protein_coding Interval_151478 chr7 122955231 122956332 + 0 NA Intergenic Intergenic 14269 ENSMUSG00000108452.1 ENSMUSG00000108452 ENSMUST00000205998 4930413G21Rik TEC Interval_96847 chr2 128875193 128875396 + 0 NA intron (ENSMUSG00000027386.9, intron 2 of 8) protein_coding-intron (ENSMUSG00000027386.9, intron 1 of 7) 12313 ENSMUSG00000027386.9 ENSMUSG00000027386 ENSMUST00000028864 Fbln7 protein_coding Interval_84191 chr19 8660985 8662753 + 0 NA intron (ENSMUSG00000117763.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000117763.1, intron 1 of 2) 1466 ENSMUSG00000117763.1 ENSMUSG00000117763 ENSMUST00000236864 9830166K06Rik lincRNA Interval_118763 chr4 133598608 133600334 + 0 NA Intergenic Intergenic 2697 ENSMUSG00000047281.3 ENSMUSG00000047281 ENSMUST00000057311 Sfn protein_coding Interval_125186 chr5 65174572 65176384 + 0 NA Intergenic Intergenic -24239 ENSMUSG00000037890.13 ENSMUSG00000037890 ENSMUST00000203554 Wdr19 protein_coding Interval_71306 chr17 22049339 22050572 + 0 NA intron (ENSMUSG00000053347.15, intron 5 of 5) protein_coding-intron (ENSMUSG00000053347.15, intron 5 of 5) -9416 ENSMUSG00000092147.1 ENSMUSG00000092147 ENSMUST00000167568 Gm7052 unprocessed_pseudogene Interval_130734 chr5 130032173 130032728 + 0 NA intron (ENSMUSG00000025532.13, intron 1 of 5) protein_coding-intron (ENSMUSG00000025532.13, intron 1 of 5) 3139 ENSMUSG00000025532.13 ENSMUSG00000025532 ENSMUST00000202691 Crcp protein_coding Interval_121972 chr5 12826137 12826502 + 0 NA Intergenic Intergenic -114051 ENSMUSG00000094310.1 ENSMUSG00000094310 ENSMUST00000180047 Gm23243 miRNA Interval_148240 chr7 80048699 80049427 + 0 NA intron (ENSMUSG00000048897.15, intron 1 of 1) protein_coding-intron (ENSMUSG00000048897.15, intron 1 of 4) 12358 ENSMUSG00000108365.1 ENSMUSG00000108365 ENSMUST00000206449 Gm44951 TEC Interval_985 chr1 13641813 13642052 + 0 NA exon (ENSMUSG00000102982.1, exon 1 of 1) TEC-exon (ENSMUSG00000102982.1, exon 1 of 1) 816 ENSMUSG00000102982.1 ENSMUSG00000102982 ENSMUST00000194537 Gm38319 TEC Interval_92676 chr2 62423015 62424090 + 0 NA intron (ENSMUSG00000087518.1, intron 1 of 4) antisense-intron (ENSMUSG00000087518.1, intron 1 of 4) 17590 ENSMUSG00000087681.1 ENSMUSG00000087681 ENSMUST00000133596 Gm13565 lincRNA Interval_152268 chr7 131182157 131183646 + 0 NA intron (ENSMUSG00000006204.7, intron 2 of 22) protein_coding-intron (ENSMUSG00000006204.7, intron 2 of 22) 8480 ENSMUSG00000006204.7 ENSMUSG00000006204 ENSMUST00000128522 Cdcp3 protein_coding Interval_54603 chr14 71046933 71047630 + 0 NA Intergenic Intergenic -39989 ENSMUSG00000115671.1 ENSMUSG00000115671 ENSMUST00000227525 Gm49289 lincRNA Interval_72624 chr17 31121599 31122298 + 0 NA Intergenic Intergenic 7698 ENSMUSG00000024029.4 ENSMUSG00000024029 ENSMUST00000024827 Tff3 protein_coding Interval_170261 chr9 106524950 106525742 + 0 NA exon (ENSMUSG00000118396.2, exon 4 of 4) protein_coding-exon (ENSMUSG00000118396.2, exon 4 of 4) 10773 ENSMUSG00000066382.4 ENSMUSG00000066382 ENSMUST00000085113 Iqcf5 protein_coding Interval_14644 chr10 37559013 37559586 + 0 NA Intergenic Intergenic -106619 ENSMUSG00000111549.1 ENSMUSG00000111549 ENSMUST00000215235 Gm48172 processed_pseudogene Interval_81039 chr18 53237551 53238040 + 0 NA Intergenic Intergenic -7933 ENSMUSG00000024535.16 ENSMUSG00000024535 ENSMUST00000025417 Snx24 protein_coding Interval_106235 chr3 94823085 94824355 + 0 NA Intergenic Intergenic -9257 ENSMUSG00000084058.1 ENSMUSG00000084058 ENSMUST00000121556 Gm15263 processed_pseudogene Interval_29328 chr11 82970938 82971581 + 0 NA exon (ENSMUSG00000082726.1, exon 1 of 1) processed_pseudogene-exon (ENSMUSG00000082726.1, exon 1 of 1) 167 ENSMUSG00000082726.1 ENSMUSG00000082726 ENSMUST00000121929 Gm11424 processed_pseudogene Interval_161658 chr8 121840188 121842927 + 0 NA TTS (ENSMUSG00000110631.1) lincRNA-TTS (ENSMUSG00000110631.1) 7904 ENSMUSG00000110631.1 ENSMUSG00000110631 ENSMUST00000212899 Gm42047 lincRNA Interval_71022 chr17 17245493 17245799 + 0 NA intron (ENSMUSG00000116802.1, intron 1 of 3) lincRNA-intron (ENSMUSG00000116802.1, intron 1 of 3) -16704 ENSMUSG00000116802.1 ENSMUSG00000116802 ENSMUST00000231376 Gm5165 lincRNA Interval_17888 chr10 80606191 80607173 + 0 NA promoter-TSS (ENSMUSG00000035370.9) protein_coding-promoter-TSS (ENSMUSG00000035370.9) -133 ENSMUSG00000035370.9 ENSMUSG00000035370 ENSMUST00000219462 Gm49322 protein_coding Interval_141620 chr6 131393986 131394632 + 0 NA Intergenic Intergenic -13903 ENSMUSG00000065036.1 ENSMUSG00000065036 ENSMUST00000083102 Gm22362 snoRNA Interval_146809 chr7 52005506 52006673 + 0 NA promoter-TSS (ENSMUSG00000074093.4) protein_coding-promoter-TSS (ENSMUSG00000074093.4) -391 ENSMUSG00000074093.4 ENSMUSG00000074093 ENSMUST00000207457 Svip protein_coding Interval_171080 chr9 114435731 114436136 + 0 NA intron (ENSMUSG00000045594.10, intron 6 of 14) protein_coding-intron (ENSMUSG00000045594.10, intron 7 of 15) 34825 ENSMUSG00000045594.10 ENSMUSG00000045594 ENSMUST00000217583 Glb1 protein_coding Interval_140456 chr6 118347860 118348405 + 0 NA Intergenic Intergenic -39748 ENSMUSG00000107933.1 ENSMUSG00000107933 ENSMUST00000204033 Gm30498 lincRNA Interval_40385 chr12 104553650 104554302 + 0 NA Intergenic Intergenic 34008 ENSMUSG00000112954.1 ENSMUSG00000112954 ENSMUST00000222329 Gm49732 lincRNA Interval_83875 chr19 5280031 5280231 + 0 NA intron (ENSMUSG00000024853.10, intron 2 of 7) protein_coding-intron (ENSMUSG00000024853.10, intron 15 of 20) 4277 ENSMUSG00000024853.10 ENSMUSG00000024853 ENSMUST00000237512 Sf3b2 protein_coding Interval_14249 chr10 29773694 29774290 + 0 NA Intergenic Intergenic -7419 ENSMUSG00000111427.1 ENSMUSG00000111427 ENSMUST00000215034 Gm6390 processed_pseudogene Interval_67008 chr16 39591837 39592046 + 0 NA Intergenic Intergenic 136926 ENSMUSG00000095894.1 ENSMUSG00000095894 ENSMUST00000116737 Gm24795 miRNA Interval_171599 chr9 119460210 119460898 + 0 NA intron (ENSMUSG00000042787.15, intron 3 of 3) protein_coding-intron (ENSMUSG00000042787.15, intron 5 of 5) 15578 ENSMUSG00000042787.15 ENSMUSG00000042787 ENSMUST00000214462 Exog protein_coding Interval_31244 chr11 99101824 99102423 + 0 NA Intergenic Intergenic -26782 ENSMUSG00000017607.9 ENSMUSG00000017607 ENSMUST00000123303 Tns4 protein_coding Interval_151018 chr7 117803784 117804978 + 0 NA Intergenic Intergenic 27587 ENSMUSG00000088116.1 ENSMUSG00000088116 ENSMUST00000157491 Gm24063 miRNA Interval_45443 chr13 55198580 55200279 + 0 NA Intergenic Intergenic -12641 ENSMUSG00000021488.8 ENSMUSG00000021488 ENSMUST00000225405 Nsd1 protein_coding Interval_109499 chr3 142962229 142962584 + 0 NA promoter-TSS (ENSMUSG00000078162.6) processed_pseudogene-promoter-TSS (ENSMUSG00000078162.6) -205 ENSMUSG00000078162.6 ENSMUSG00000078162 ENSMUST00000181051 Gm2574 processed_pseudogene Interval_66936 chr16 38618689 38619524 + 0 NA intron (ENSMUSG00000022799.4, intron 7 of 11) protein_coding-intron (ENSMUSG00000022799.4, intron 7 of 11) -45806 ENSMUSG00000091238.1 ENSMUSG00000091238 ENSMUST00000168897 Gm17103 antisense Interval_65210 chr16 20540443 20540831 + 0 NA promoter-TSS (ENSMUSG00000022841.15) protein_coding-promoter-TSS (ENSMUSG00000022841.15) 5118 ENSMUSG00000022841.15 ENSMUSG00000022841 ENSMUST00000150537 Ap2m1 protein_coding Interval_11383 chr1 181427630 181428063 + 0 NA intron (ENSMUSG00000026514.14, intron 3 of 5) protein_coding-intron (ENSMUSG00000026514.14, intron 3 of 5) 4554 ENSMUSG00000089927.1 ENSMUSG00000089927 ENSMUST00000160086 Gm16539 unprocessed_pseudogene Interval_57440 chr15 10950990 10952977 + 0 NA promoter-TSS (ENSMUSG00000058914.12) protein_coding-promoter-TSS (ENSMUSG00000058914.12) -374 ENSMUSG00000058914.12 ENSMUSG00000058914 ENSMUST00000110523 C1qtnf3 protein_coding Interval_38833 chr12 83100091 83100700 + 0 NA intron (ENSMUSG00000021219.16, intron 13 of 16) protein_coding-intron (ENSMUSG00000021219.16, intron 12 of 14) -1521 ENSMUSG00000102029.1 ENSMUSG00000102029 ENSMUST00000187556 Gm29530 antisense Interval_95673 chr2 113966193 113966419 + 0 NA Intergenic Intergenic -45744 ENSMUSG00000096006.1 ENSMUSG00000096006 ENSMUST00000178049 Gm21596 processed_pseudogene Interval_66981 chr16 38983472 38984117 + 0 NA intron (ENSMUSG00000022790.14, intron 1 of 6) protein_coding-intron (ENSMUSG00000022790.14, intron 1 of 6) 56585 ENSMUSG00000089607.1 ENSMUSG00000089607 ENSMUST00000158982 Gm22500 snRNA Interval_51010 chr14 21592028 21594996 + 0 NA intron (ENSMUSG00000021767.19, intron 2 of 5) protein_coding-intron (ENSMUSG00000021767.19, intron 2 of 16) 76637 ENSMUSG00000021767.19 ENSMUSG00000021767 ENSMUST00000226589 Kat6b protein_coding Interval_52128 chr14 36918941 36919622 + 0 NA promoter-TSS (ENSMUSG00000058690.14) protein_coding-promoter-TSS (ENSMUSG00000058690.14) -10100 ENSMUSG00000058690.14 ENSMUSG00000058690 ENSMUST00000182635 Ccser2 protein_coding Interval_21278 chr10 127621206 127622402 + 0 NA promoter-TSS (ENSMUSG00000040249.15) protein_coding-promoter-TSS (ENSMUSG00000040249.15) 14583 ENSMUSG00000112696.1 ENSMUSG00000112696 ENSMUST00000219311 Gm48815 processed_pseudogene Interval_83763 chr19 4451717 4452616 + 0 NA promoter-TSS (ENSMUSG00000049303.10) protein_coding-promoter-TSS (ENSMUSG00000049303.10) -12766 ENSMUSG00000041845.11 ENSMUSG00000041845 ENSMUST00000151420 Rhod protein_coding Interval_145223 chr7 30772967 30773509 + 0 NA intron (ENSMUSG00000060962.12, intron 8 of 15) protein_coding-intron (ENSMUSG00000060962.12, intron 12 of 19) 8181 ENSMUSG00000060962.12 ENSMUSG00000060962 ENSMUST00000041703 Dmkn protein_coding Interval_16874 chr10 69385326 69385590 + 0 NA Intergenic Intergenic -12146 ENSMUSG00000112509.1 ENSMUSG00000112509 ENSMUST00000219632 Gm47211 processed_pseudogene Interval_94802 chr2 94462388 94463414 + 0 NA Intergenic Intergenic -24765 ENSMUSG00000027193.12 ENSMUSG00000027193 ENSMUST00000150930 Api5 protein_coding Interval_140535 chr6 119373367 119373748 + 0 NA intron (ENSMUSG00000030168.13, intron 1 of 5) protein_coding-intron (ENSMUSG00000030168.13, intron 1 of 7) 43918 ENSMUSG00000030168.13 ENSMUSG00000030168 ENSMUST00000189710 Adipor2 protein_coding Interval_10836 chr1 175880008 175881285 + 0 NA promoter-TSS (ENSMUSG00000039748.11) protein_coding-promoter-TSS (ENSMUSG00000039748.11) -148 ENSMUSG00000039748.11 ENSMUSG00000039748 ENSMUST00000192378 Exo1 protein_coding Interval_21704 chr11 3812240 3812464 + 0 NA intron (ENSMUSG00000020435.17, intron 2 of 2) protein_coding-intron (ENSMUSG00000020435.17, intron 2 of 13) 23460 ENSMUSG00000088352.1 ENSMUSG00000088352 ENSMUST00000157727 Gm24013 snoRNA Interval_119787 chr4 139987438 139987852 + 0 NA Intergenic Intergenic -19619 ENSMUSG00000078234.6 ENSMUSG00000078234 ENSMUST00000105031 Klhdc7a protein_coding Interval_145088 chr7 29968783 29969542 + 0 NA exon (ENSMUSG00000063623.4, exon 4 of 4) transcribed_unprocessed_pseudogene-exon (ENSMUSG00000063623.4, exon 4 of 4) -3597 ENSMUSG00000083669.5 ENSMUSG00000083669 ENSMUST00000121822 Mif-ps processed_pseudogene Interval_143106 chr6 149375062 149376525 + 0 NA Intergenic Intergenic 14107 ENSMUSG00000081126.1 ENSMUSG00000081126 ENSMUST00000120260 Gm15784 processed_pseudogene Interval_1186 chr1 16707647 16708011 + 0 NA intron (ENSMUSG00000025779.10, intron 4 of 4) protein_coding-intron (ENSMUSG00000025779.10, intron 4 of 4) 19778 ENSMUSG00000025779.10 ENSMUSG00000025779 ENSMUST00000190366 Ly96 protein_coding Interval_77402 chr17 88476475 88477533 + 0 NA exon (ENSMUSG00000034998.18, exon 3 of 3) protein_coding-exon (ENSMUSG00000034998.18, exon 3 of 3) 36269 ENSMUSG00000034998.18 ENSMUSG00000034998 ENSMUST00000141052 Foxn2 protein_coding Interval_103506 chr3 45380059 45381837 + 0 NA exon (ENSMUSG00000049100.15, exon 1 of 5) protein_coding-exon (ENSMUSG00000049100.15, exon 1 of 5) -1685 ENSMUSG00000049100.15 ENSMUSG00000049100 ENSMUST00000195655 Pcdh10 protein_coding Interval_74683 chr17 55944502 55945800 + 0 NA intron (ENSMUSG00000062101.12, intron 1 of 3) protein_coding-intron (ENSMUSG00000062101.12, intron 1 of 3) 4349 ENSMUSG00000062101.12 ENSMUSG00000062101 ENSMUST00000189452 Zfp119b protein_coding Interval_152420 chr7 132930474 132931903 + 0 NA promoter-TSS (ENSMUSG00000030967.15) protein_coding-promoter-TSS (ENSMUSG00000030967.15) -16980 ENSMUSG00000030967.15 ENSMUSG00000030967 ENSMUST00000153335 Zranb1 protein_coding Interval_71757 chr17 25893777 25894698 + 0 NA intron (ENSMUSG00000025730.14, intron 2 of 6) protein_coding-intron (ENSMUSG00000025730.14, intron 2 of 6) -7619 ENSMUSG00000057580.4 ENSMUSG00000057580 ENSMUST00000078252 Cox7c-ps1 transcribed_processed_pseudogene Interval_55146 chr14 78660592 78661129 + 0 NA intron (ENSMUSG00000034731.11, intron 2 of 29) protein_coding-intron (ENSMUSG00000034731.11, intron 1 of 28) -31586 ENSMUSG00000034731.11 ENSMUSG00000034731 ENSMUST00000227820 Dgkh protein_coding Interval_162689 chr9 7829109 7830342 + 0 NA intron (ENSMUSG00000057367.12, intron 2 of 7) protein_coding-intron (ENSMUSG00000057367.12, intron 1 of 6) 7080 ENSMUSG00000057367.12 ENSMUSG00000057367 ENSMUST00000054878 Birc2 protein_coding Interval_29758 chr11 86615687 86616540 + 0 NA intron (ENSMUSG00000018171.9, intron 7 of 11) protein_coding-intron (ENSMUSG00000018171.9, intron 7 of 11) -13818 ENSMUSG00000018171.9 ENSMUSG00000018171 ENSMUST00000143991 Vmp1 protein_coding Interval_8842 chr1 151483131 151484214 + 0 NA intron (ENSMUSG00000026484.13, intron 1 of 3) protein_coding-intron (ENSMUSG00000026484.13, intron 1 of 6) -7510 ENSMUSG00000026484.13 ENSMUSG00000026484 ENSMUST00000187991 Rnf2 protein_coding Interval_148013 chr7 78087561 78088391 + 0 NA Intergenic Intergenic -61336 ENSMUSG00000104817.1 ENSMUSG00000104817 ENSMUST00000196301 Gm44358 miRNA Interval_58173 chr15 30304908 30305114 + 0 NA intron (ENSMUSG00000022240.10, intron 1 of 2) protein_coding-intron (ENSMUSG00000022240.10, intron 1 of 22) -123833 ENSMUSG00000115073.1 ENSMUSG00000115073 ENSMUST00000226263 Gm49283 TEC Interval_111395 chr4 20504489 20505411 + 0 NA intron (ENSMUSG00000055761.14, intron 1 of 5) protein_coding-intron (ENSMUSG00000055761.14, intron 1 of 4) 113854 ENSMUSG00000081964.1 ENSMUSG00000081964 ENSMUST00000117877 Gm11873 processed_pseudogene Interval_132863 chr5 148378686 148380276 + 0 NA intron (ENSMUSG00000041313.14, intron 1 of 5) protein_coding-intron (ENSMUSG00000041313.14, intron 1 of 12) 20310 ENSMUSG00000041313.14 ENSMUSG00000041313 ENSMUST00000201348 Slc7a1 protein_coding Interval_173248 chrX 75155592 75156154 + 0 NA promoter-TSS (ENSMUSG00000082244.1) processed_pseudogene-promoter-TSS (ENSMUSG00000082244.1) 54 ENSMUSG00000082244.1 ENSMUSG00000082244 ENSMUST00000118131 Gm8503 processed_pseudogene Interval_46114 chr13 61820174 61820432 + 0 NA intron (ENSMUSG00000113626.1, intron 1 of 2) transcribed_processed_pseudogene-intron (ENSMUSG00000113626.1, intron 1 of 1) 3361 ENSMUSG00000080451.1 ENSMUSG00000080451 ENSMUST00000116801 Gm24193 miRNA Interval_100753 chr2 172355145 172356327 + 0 NA TTS (ENSMUSG00000027495.4) protein_coding-TTS (ENSMUSG00000027495.4) 7395 ENSMUSG00000027496.15 ENSMUSG00000027496 ENSMUST00000126107 Aurka protein_coding Interval_134981 chr6 34304316 34305288 + 0 NA exon (ENSMUSG00000001642.18, exon 1 of 1) protein_coding-exon (ENSMUSG00000001642.18, exon 1 of 1) 2655 ENSMUSG00000001642.18 ENSMUSG00000001642 ENSMUST00000154655 Akr1b3 protein_coding Interval_73824 chr17 44165713 44166445 + 0 NA intron (ENSMUSG00000023959.10, intron 1 of 5) protein_coding-intron (ENSMUSG00000023959.10, intron 1 of 5) 31311 ENSMUSG00000023959.10 ENSMUSG00000023959 ENSMUST00000233193 Clic5 protein_coding Interval_77890 chr18 5054129 5054682 + 0 NA intron (ENSMUSG00000024236.18, intron 7 of 37) protein_coding-intron (ENSMUSG00000024236.18, intron 4 of 34) 19239 ENSMUSG00000024236.18 ENSMUSG00000024236 ENSMUST00000129543 Svil protein_coding Interval_167033 chr9 64691075 64693048 + 0 NA intron (ENSMUSG00000036466.17, intron 17 of 24) protein_coding-intron (ENSMUSG00000036466.17, intron 18 of 24) 33659 ENSMUSG00000004771.12 ENSMUSG00000004771 ENSMUST00000165083 Rab11a protein_coding Interval_11778 chr1 185362507 185363799 + 0 NA promoter-TSS (ENSMUSG00000097261.2) lincRNA-promoter-TSS (ENSMUSG00000097261.2) -288 ENSMUSG00000097261.2 ENSMUSG00000097261 ENSMUST00000195314 4930532G15Rik lincRNA Interval_60751 chr15 76522038 76523971 + 0 NA promoter-TSS (ENSMUSG00000048385.9) protein_coding-promoter-TSS (ENSMUSG00000048385.9) -1102 ENSMUSG00000048385.9 ENSMUSG00000048385 ENSMUST00000164703 Scrt1 protein_coding Interval_123068 chr5 29389016 29389833 + 0 NA exon (ENSMUSG00000097561.1, exon 2 of 2) lincRNA-exon (ENSMUSG00000097561.1, exon 2 of 2) 10725 ENSMUSG00000097561.1 ENSMUSG00000097561 ENSMUST00000181005 4632411P08Rik lincRNA Interval_59266 chr15 50386563 50386799 + 0 NA Intergenic Intergenic 99783 ENSMUSG00000115478.1 ENSMUSG00000115478 ENSMUST00000227182 Gm49198 lincRNA Interval_67685 chr16 55950702 55951981 + 0 NA Intergenic Intergenic -10630 ENSMUSG00000116653.1 ENSMUSG00000116653 ENSMUST00000231662 Gm8900 processed_pseudogene Interval_18679 chr10 89235471 89235738 + 0 NA intron (ENSMUSG00000035189.17, intron 3 of 6) protein_coding-intron (ENSMUSG00000035189.17, intron 1 of 7) 21986 ENSMUSG00000035189.17 ENSMUSG00000035189 ENSMUST00000180843 Ano4 protein_coding Interval_47122 chr13 75954078 75954729 + 0 NA exon (ENSMUSG00000061833.6, exon 1 of 1) processed_pseudogene-exon (ENSMUSG00000061833.6, exon 1 of 1) 267 ENSMUSG00000061833.6 ENSMUSG00000061833 ENSMUST00000073790 Gm6311 processed_pseudogene Interval_37814 chr12 72202430 72203076 + 0 NA Intergenic Intergenic -17724 ENSMUSG00000021086.5 ENSMUSG00000021086 ENSMUST00000021494 Ccdc175 protein_coding Interval_121503 chr4 156241762 156242073 + 0 NA intron (ENSMUSG00000095567.8, intron 1 of 1) protein_coding-intron (ENSMUSG00000095567.8, intron 11 of 18) 4698 ENSMUSG00000095567.8 ENSMUSG00000095567 ENSMUST00000238213 Noc2l protein_coding Interval_134943 chr6 33991949 33994044 + 0 NA promoter-TSS (ENSMUSG00000087441.1) lincRNA-promoter-TSS (ENSMUSG00000087441.1) -585 ENSMUSG00000087441.1 ENSMUSG00000087441 ENSMUST00000155496 Gm13853 lincRNA Interval_118979 chr4 134825671 134826688 + 0 NA intron (ENSMUSG00000028826.14, intron 7 of 8) protein_coding-intron (ENSMUSG00000028826.14, intron 6 of 10) -14966 ENSMUSG00000028826.14 ENSMUSG00000028826 ENSMUST00000136113 Maco1 protein_coding Interval_39037 chr12 84593234 84594368 + 0 NA exon (ENSMUSG00000021239.12, exon 5 of 5) protein_coding-exon (ENSMUSG00000021239.12, exon 5 of 5) 23612 ENSMUSG00000021240.6 ENSMUSG00000021240 ENSMUST00000221070 Abcd4 protein_coding Interval_63686 chr15 102801907 102803268 + 0 NA intron (ENSMUSG00000116500.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000116500.1, intron 1 of 1) 5092 ENSMUSG00000116500.1 ENSMUSG00000116500 ENSMUST00000229994 Gm36560 lincRNA Interval_40682 chr12 107086255 107086638 + 0 NA intron (ENSMUSG00000085120.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000085120.1, intron 1 of 2) 13227 ENSMUSG00000085120.1 ENSMUSG00000085120 ENSMUST00000143652 Gm16086 lincRNA Interval_159325 chr8 93548381 93548868 + 0 NA Intergenic Intergenic -12794 ENSMUSG00000058019.13 ENSMUSG00000058019 ENSMUST00000212722 Ces5a protein_coding Interval_47234 chr13 78691145 78692363 + 0 NA Intergenic Intergenic 53737 ENSMUSG00000114594.1 ENSMUSG00000114594 ENSMUST00000226045 Gm48402 lincRNA Interval_80076 chr18 37321792 37322853 + 0 NA exon (ENSMUSG00000063687.3, exon 1 of 1) protein_coding-exon (ENSMUSG00000063687.3, exon 1 of 1) 1941 ENSMUSG00000063687.3 ENSMUSG00000063687 ENSMUST00000078271 Pcdhb5 protein_coding Interval_15023 chr10 41997309 41998536 + 0 NA intron (ENSMUSG00000071324.11, intron 3 of 16) protein_coding-intron (ENSMUSG00000071324.11, intron 4 of 17) -20294 ENSMUSG00000111103.1 ENSMUSG00000111103 ENSMUST00000214172 1700016J18Rik bidirectional_promoter_lncRNA Interval_29582 chr11 85139177 85140779 + 0 NA promoter-TSS (ENSMUSG00000000804.14) protein_coding-promoter-TSS (ENSMUSG00000000804.14) -49 ENSMUSG00000000804.14 ENSMUSG00000000804 ENSMUST00000174809 Usp32 protein_coding Interval_139477 chr6 100431660 100432033 + 0 NA Intergenic Intergenic 62968 ENSMUSG00000087929.1 ENSMUSG00000087929 ENSMUST00000157304 Gm23234 snoRNA Interval_67117 chr16 43539757 43540494 + 0 NA intron (ENSMUSG00000022708.16, intron 3 of 5) protein_coding-intron (ENSMUSG00000022708.16, intron 3 of 8) 31968 ENSMUSG00000022708.16 ENSMUSG00000022708 ENSMUST00000114695 Zbtb20 protein_coding Interval_158930 chr8 88032898 88033467 + 0 NA Intergenic Intergenic 37628 ENSMUSG00000110719.1 ENSMUSG00000110719 ENSMUST00000212350 Gm2716 unitary_pseudogene Interval_159673 chr8 96533560 96533769 + 0 NA Intergenic Intergenic 21322 ENSMUSG00000110717.1 ENSMUSG00000110717 ENSMUST00000212351 1700047G07Rik lincRNA Interval_37019 chr12 56478985 56479660 + 0 NA Intergenic Intergenic 21506 ENSMUSG00000112468.1 ENSMUSG00000112468 ENSMUST00000219957 Gm47720 TEC Interval_162533 chr9 3998234 3998595 + 0 NA Intergenic Intergenic -215508 ENSMUSG00000110691.1 ENSMUSG00000110691 ENSMUST00000211927 Gm5363 processed_pseudogene Interval_120708 chr4 150218085 150218732 + 0 NA Intergenic Intergenic -9627 ENSMUSG00000082140.1 ENSMUSG00000082140 ENSMUST00000117930 Gm13094 processed_pseudogene Interval_76844 chr17 84465719 84467010 + 0 NA promoter-TSS (ENSMUSG00000024251.10) protein_coding-promoter-TSS (ENSMUSG00000024251.10) 74935 ENSMUSG00000096415.1 ENSMUSG00000096415 ENSMUST00000179017 Gm24722 snRNA Interval_69777 chr16 96221054 96221429 + 0 NA TTS (ENSMUSG00000040666.19) protein_coding-TTS (ENSMUSG00000040666.19) 20570 ENSMUSG00000040666.19 ENSMUSG00000040666 ENSMUST00000233577 Sh3bgr protein_coding Interval_60578 chr15 75317414 75317828 + 0 NA Intergenic Intergenic -2657 ENSMUSG00000101289.1 ENSMUSG00000101289 ENSMUST00000185571 Gm3454 unprocessed_pseudogene Interval_165310 chr9 46193305 46193670 + 0 NA intron (ENSMUSG00000034135.15, intron 3 of 20) protein_coding-intron (ENSMUSG00000034135.15, intron 6 of 22) -35234 ENSMUSG00000032083.8 ENSMUSG00000032083 ENSMUST00000132155 Apoa1 protein_coding Interval_122900 chr5 27074948 27076448 + 0 NA intron (ENSMUSG00000061576.15, intron 1 of 25) protein_coding-intron (ENSMUSG00000061576.15, intron 1 of 25) 26305 ENSMUSG00000061576.15 ENSMUSG00000061576 ENSMUST00000134175 Dpp6 protein_coding Interval_65622 chr16 24316042 24316278 + 0 NA intron (ENSMUSG00000115852.2, intron 3 of 4) transcribed_processed_pseudogene-intron (ENSMUSG00000115852.2, intron 3 of 4) 54072 ENSMUSG00000116785.1 ENSMUSG00000116785 ENSMUST00000231939 Gm41434 processed_pseudogene Interval_54251 chr14 66892458 66892863 + 0 NA Intergenic Intergenic -18582 ENSMUSG00000046204.14 ENSMUSG00000046204 ENSMUST00000165831 Pnma2 protein_coding Interval_13403 chr10 17815303 17815598 + 0 NA intron (ENSMUSG00000039891.6, intron 4 of 9) protein_coding-intron (ENSMUSG00000039891.6, intron 4 of 9) -1929 ENSMUSG00000093537.1 ENSMUSG00000093537 ENSMUST00000175829 Gm7584 processed_pseudogene Interval_142076 chr6 136979489 136980856 + 0 NA Intergenic Intergenic -6424 ENSMUSG00000107734.1 ENSMUSG00000107734 ENSMUST00000203175 Gm30055 TEC Interval_54723 chr14 73587585 73588826 + 0 NA intron (ENSMUSG00000022110.13, intron 6 of 10) protein_coding-intron (ENSMUSG00000022110.13, intron 6 of 11) 35573 ENSMUSG00000022110.13 ENSMUSG00000022110 ENSMUST00000159165 Sucla2 protein_coding Interval_52208 chr14 40627967 40628153 + 0 NA Intergenic Intergenic 70822 ENSMUSG00000098169.1 ENSMUSG00000098169 ENSMUST00000182253 Gm5205 processed_pseudogene Interval_32336 chr11 107036922 107038388 + 0 NA intron (ENSMUSG00000040481.17, intron 5 of 5) protein_coding-intron (ENSMUSG00000040481.17, intron 27 of 27) 9432 ENSMUSG00000078607.6 ENSMUSG00000078607 ENSMUST00000106767 1810010H24Rik protein_coding Interval_68858 chr16 87631277 87631660 + 0 NA Intergenic Intergenic -10348 ENSMUSG00000064670.1 ENSMUSG00000064670 ENSMUST00000082736 Gm22808 snRNA Interval_127814 chr5 108001115 108003277 + 0 NA promoter-TSS (ENSMUSG00000084855.2) processed_pseudogene-promoter-TSS (ENSMUSG00000084855.2) -64 ENSMUSG00000084855.2 ENSMUSG00000084855 ENSMUST00000117916 Gm9850 processed_pseudogene Interval_25001 chr11 42888285 42888683 + 0 NA Intergenic Intergenic -9011 ENSMUSG00000084627.1 ENSMUSG00000084627 ENSMUST00000122678 Gm25543 misc_RNA Interval_54910 chr14 76171779 76172147 + 0 NA Intergenic Intergenic 61072 ENSMUSG00000022009.1 ENSMUSG00000022009 ENSMUST00000022586 Nufip1 protein_coding Interval_151664 chr7 125818614 125818943 + 0 NA intron (ENSMUSG00000032743.15, intron 11 of 26) protein_coding-intron (ENSMUSG00000032743.15, intron 12 of 27) 110861 ENSMUSG00000032743.15 ENSMUSG00000032743 ENSMUST00000155059 D430042O09Rik protein_coding Interval_126721 chr5 92270064 92271166 + 0 NA intron (ENSMUSG00000029413.14, intron 1 of 6) protein_coding-intron (ENSMUSG00000029413.14, intron 3 of 10) 1933 ENSMUSG00000029413.14 ENSMUSG00000029413 ENSMUST00000161212 Naaa protein_coding Interval_40691 chr12 107357125 107357521 + 0 NA Intergenic Intergenic -61818 ENSMUSG00000090607.1 ENSMUSG00000090607 ENSMUST00000165496 Gm17052 processed_pseudogene Interval_165693 chr9 51008133 51009605 + 0 NA promoter-TSS (ENSMUSG00000037112.16) protein_coding-promoter-TSS (ENSMUSG00000037112.16) 131 ENSMUSG00000037112.16 ENSMUSG00000037112 ENSMUST00000176327 Sik2 protein_coding Interval_35310 chr12 20415091 20416886 + 0 NA promoter-TSS (ENSMUSG00000112951.2) unprocessed_pseudogene-promoter-TSS (ENSMUSG00000112951.2) 51 ENSMUSG00000112951.2 ENSMUSG00000112951 ENSMUST00000223397 Gm49929 unprocessed_pseudogene Interval_24901 chr11 41016140 41017029 + 0 NA Intergenic Intergenic 18539 ENSMUSG00000065916.1 ENSMUSG00000065916 ENSMUST00000083982 Gm24446 snRNA Interval_40986 chr12 110446250 110447660 + 0 NA promoter-TSS (ENSMUSG00000017843.14) protein_coding-promoter-TSS (ENSMUSG00000017843.14) -352 ENSMUSG00000017843.14 ENSMUSG00000017843 ENSMUST00000221074 Ppp2r5c protein_coding Interval_23451 chr11 22698763 22698986 + 0 NA Intergenic Intergenic 34112 ENSMUSG00000085979.1 ENSMUSG00000085979 ENSMUST00000143643 Gm12055 lincRNA Interval_162721 chr9 7992083 7992412 + 0 NA intron (ENSMUSG00000053110.13, intron 1 of 7) protein_coding-intron (ENSMUSG00000053110.13, intron 2 of 8) 9456 ENSMUSG00000053110.13 ENSMUSG00000053110 ENSMUST00000174300 Yap1 protein_coding Interval_122995 chr5 28261741 28262177 + 0 NA Intergenic Intergenic -16153 ENSMUSG00000044681.19 ENSMUSG00000044681 ENSMUST00000141196 Cnpy1 protein_coding Interval_174340 chrX 145482656 145482925 + 0 NA intron (ENSMUSG00000041688.16, intron 2 of 11) protein_coding-intron (ENSMUSG00000041688.16, intron 2 of 11) 22391 ENSMUSG00000041688.16 ENSMUSG00000041688 ENSMUST00000143610 Amot protein_coding Interval_88018 chr19 57941530 57942619 + 0 NA intron (ENSMUSG00000054843.9, intron 27 of 28) protein_coding-intron (ENSMUSG00000054843.9, intron 27 of 28) -109093 ENSMUSG00000093757.1 ENSMUSG00000093757 ENSMUST00000176631 Mir5623 miRNA Interval_97511 chr2 138265246 138266938 + 0 NA intron (ENSMUSG00000062098.11, intron 1 of 3) protein_coding-intron (ENSMUSG00000062098.11, intron 1 of 4) 9430 ENSMUSG00000062098.11 ENSMUSG00000062098 ENSMUST00000075410 Btbd3 protein_coding Interval_61215 chr15 80031095 80031516 + 0 NA intron (ENSMUSG00000116125.1, intron 2 of 4) antisense-intron (ENSMUSG00000116125.1, intron 2 of 4) -18102 ENSMUSG00000000489.7 ENSMUSG00000000489 ENSMUST00000229168 Pdgfb protein_coding Interval_153734 chr8 5701042 5701211 + 0 NA Intergenic Intergenic -4301 ENSMUSG00000093281.1 ENSMUSG00000093281 ENSMUST00000175540 Gm22565 miRNA Interval_156938 chr8 61989562 61989784 + 0 NA intron (ENSMUSG00000037921.15, intron 25 of 38) protein_coding-intron (ENSMUSG00000037921.15, intron 24 of 37) 61584 ENSMUSG00000037921.15 ENSMUSG00000037921 ENSMUST00000136121 Ddx60 protein_coding Interval_105915 chr3 90065196 90066665 + 0 NA TTS (ENSMUSG00000118506.1) protein_coding-TTS (ENSMUSG00000118506.1) 3134 ENSMUSG00000118506.1 ENSMUSG00000118506 ENSMUST00000029551 1700094D03Rik protein_coding Interval_125844 chr5 74949011 74949300 + 0 NA promoter-TSS (ENSMUSG00000072874.4) lincRNA-promoter-TSS (ENSMUSG00000072874.4) -35 ENSMUSG00000072874.4 ENSMUSG00000072874 ENSMUST00000101121 Gm6116 lincRNA Interval_127414 chr5 103792036 103792900 + 0 NA intron (ENSMUSG00000029313.18, intron 3 of 12) protein_coding-intron (ENSMUSG00000029313.18, intron 3 of 19) 37904 ENSMUSG00000029313.18 ENSMUSG00000029313 ENSMUST00000152145 Aff1 protein_coding Interval_113136 chr4 48559901 48560641 + 0 NA intron (ENSMUSG00000039693.11, intron 1 of 1) protein_coding-intron (ENSMUSG00000039693.11, intron 2 of 2) 19725 ENSMUSG00000039693.11 ENSMUSG00000039693 ENSMUST00000132360 Msantd3 protein_coding Interval_47556 chr13 88417802 88418070 + 0 NA Intergenic Intergenic 35590 ENSMUSG00000114565.1 ENSMUSG00000114565 ENSMUST00000225629 Gm47651 processed_pseudogene Interval_171665 chr9 120027198 120028265 + 0 NA intron (ENSMUSG00000052336.7, intron 2 of 2) protein_coding-intron (ENSMUSG00000052336.7, intron 2 of 2) -7916 ENSMUSG00000079243.4 ENSMUSG00000079243 ENSMUST00000238557 Xirp1 protein_coding Interval_150230 chr7 108614226 108615172 + 0 NA exon (ENSMUSG00000058244.4, exon 2 of 2) protein_coding-exon (ENSMUSG00000058244.4, exon 2 of 2) 3912 ENSMUSG00000058244.4 ENSMUSG00000058244 ENSMUST00000077343 Olfr506 protein_coding Interval_75232 chr17 64967114 64967349 + 0 NA Intergenic Intergenic -22379 ENSMUSG00000077691.1 ENSMUSG00000077691 ENSMUST00000104503 Gm25344 snoRNA Interval_96861 chr2 129078459 129078916 + 0 NA intron (ENSMUSG00000027394.13, intron 1 of 3) protein_coding-intron (ENSMUSG00000027394.13, intron 3 of 6) 12702 ENSMUSG00000027394.13 ENSMUSG00000027394 ENSMUST00000144120 Ttl protein_coding Interval_96467 chr2 124132769 124133227 + 0 NA intron (ENSMUSG00000027200.17, intron 1 of 1) protein_coding-intron (ENSMUSG00000027200.17, intron 1 of 20) -3042 ENSMUSG00000085496.1 ENSMUSG00000085496 ENSMUST00000129584 4930517E11Rik lincRNA Interval_124147 chr5 38669531 38670447 + 0 NA exon (ENSMUSG00000046572.10, exon 4 of 4) protein_coding-exon (ENSMUSG00000046572.10, exon 4 of 4) 14837 ENSMUSG00000046572.10 ENSMUSG00000046572 ENSMUST00000178760 Zfp518b protein_coding Interval_156475 chr8 48540901 48541373 + 0 NA intron (ENSMUSG00000031561.16, intron 2 of 26) protein_coding-intron (ENSMUSG00000031561.16, intron 2 of 28) 14176 ENSMUSG00000031561.16 ENSMUSG00000031561 ENSMUST00000211812 Tenm3 protein_coding Interval_9778 chr1 162092592 162093062 + 0 NA intron (ENSMUSG00000040265.16, intron 2 of 3) protein_coding-intron (ENSMUSG00000040265.16, intron 15 of 19) -4359 ENSMUSG00000102994.1 ENSMUSG00000102994 ENSMUST00000193239 Gm37767 TEC Interval_22972 chr11 18197705 18199475 + 0 NA Intergenic Intergenic 8354 ENSMUSG00000080826.1 ENSMUSG00000080826 ENSMUST00000121258 Gm12019 processed_pseudogene Interval_80270 chr18 38648653 38649499 + 0 NA intron (ENSMUSG00000118257.1, intron 2 of 3) lincRNA-intron (ENSMUSG00000118257.1, intron 2 of 3) 21789 ENSMUSG00000118257.1 ENSMUSG00000118257 ENSMUST00000134388 9630014M24Rik lincRNA Interval_173125 chrX 72986787 72987791 + 0 NA promoter-TSS (ENSMUSG00000031351.15) protein_coding-promoter-TSS (ENSMUSG00000031351.15) -50 ENSMUSG00000031351.15 ENSMUSG00000031351 ENSMUST00000134588 Zfp185 protein_coding Interval_155336 chr8 31628049 31628363 + 0 NA intron (ENSMUSG00000110329.1, intron 2 of 2) lincRNA-intron (ENSMUSG00000110329.1, intron 2 of 4) 33225 ENSMUSG00000084524.1 ENSMUSG00000084524 ENSMUST00000122575 Gm24184 misc_RNA Interval_134706 chr6 30542802 30543052 + 0 NA promoter-TSS (ENSMUSG00000071553.10) protein_coding-promoter-TSS (ENSMUSG00000071553.10) -1558 ENSMUSG00000071553.10 ENSMUSG00000071553 ENSMUST00000144282 Cpa2 protein_coding Interval_19432 chr10 99203639 99204415 + 0 NA Intergenic Intergenic -19417 ENSMUSG00000089994.1 ENSMUSG00000089994 ENSMUST00000160182 Gm16239 antisense Interval_109193 chr3 137820388 137822276 + 0 NA Intergenic Intergenic -17863 ENSMUSG00000105427.1 ENSMUSG00000105427 ENSMUST00000198262 Gm31678 lincRNA Interval_21785 chr11 4327556 4327834 + 0 NA Intergenic Intergenic -3440 ENSMUSG00000065627.1 ENSMUSG00000065627 ENSMUST00000083693 Gm24803 snRNA Interval_25349 chr11 46577180 46579390 + 0 NA intron (ENSMUSG00000046974.6, intron 3 of 5) protein_coding-intron (ENSMUSG00000046974.6, intron 3 of 5) 6749 ENSMUSG00000046974.6 ENSMUSG00000046974 ENSMUST00000050937 BC053393 protein_coding Interval_113939 chr4 60109877 60110429 + 0 NA Intergenic Intergenic 24313 ENSMUSG00000083239.1 ENSMUSG00000083239 ENSMUST00000120720 Mup-ps1 unprocessed_pseudogene Interval_44962 chr13 50978005 50978509 + 0 NA Intergenic Intergenic -35829 ENSMUSG00000084609.2 ENSMUSG00000084609 ENSMUST00000122660 Gm22199 misc_RNA Interval_130755 chr5 130171392 130172649 + 0 NA intron (ENSMUSG00000025340.14, intron 1 of 6) protein_coding-intron (ENSMUSG00000025340.14, intron 1 of 8) -15188 ENSMUSG00000025340.14 ENSMUSG00000025340 ENSMUST00000143865 Rabgef1 protein_coding Interval_18773 chr10 90464136 90465795 + 0 NA intron (ENSMUSG00000058589.14, intron 12 of 25) protein_coding-intron (ENSMUSG00000058589.14, intron 12 of 17) 14055 ENSMUSG00000088221.1 ENSMUSG00000088221 ENSMUST00000157596 Gm22602 snRNA Interval_170392 chr9 107630457 107630898 + 0 NA TTS (ENSMUSG00000102324.1) TEC-TTS (ENSMUSG00000102324.1) 1862 ENSMUSG00000102324.1 ENSMUSG00000102324 ENSMUST00000195284 Gm19721 TEC Interval_83033 chr18 80618948 80619963 + 0 NA intron (ENSMUSG00000033016.16, intron 9 of 9) protein_coding-intron (ENSMUSG00000033016.16, intron 9 of 9) -10480 ENSMUSG00000033016.16 ENSMUSG00000033016 ENSMUST00000236711 Nfatc1 protein_coding Interval_80127 chr18 37755649 37756465 + 0 NA promoter-TSS (ENSMUSG00000097330.2) processed_transcript-promoter-TSS (ENSMUSG00000097330.2) 291 ENSMUSG00000097330.2 ENSMUSG00000097330 ENSMUST00000192805 Gm26672 processed_transcript Interval_167069 chr9 65031187 65033263 + 0 NA promoter-TSS (ENSMUSG00000032393.15) protein_coding-promoter-TSS (ENSMUSG00000032393.15) -553 ENSMUSG00000032393.15 ENSMUSG00000032393 ENSMUST00000214678 Dpp8 protein_coding Interval_94558 chr2 92208552 92208982 + 0 NA intron (ENSMUSG00000058318.15, intron 3 of 3) protein_coding-intron (ENSMUSG00000058318.15, intron 1 of 15) 16790 ENSMUSG00000088639.1 ENSMUSG00000088639 ENSMUST00000158014 Mir1955 miRNA Interval_143481 chr7 7204350 7204570 + 0 NA intron (ENSMUSG00000066838.7, intron 4 of 4) protein_coding-intron (ENSMUSG00000066838.7, intron 4 of 4) 5538 ENSMUSG00000066838.7 ENSMUSG00000066838 ENSMUST00000074455 Zfp772 protein_coding Interval_7520 chr1 131962446 131964220 + 0 NA intron (ENSMUSG00000100037.1, intron 1 of 2) protein_coding-intron (ENSMUSG00000026435.15, intron 1 of 4) 379 ENSMUSG00000100037.1 ENSMUSG00000100037 ENSMUST00000191034 Gm29103 processed_transcript Interval_109135 chr3 136557276 136557495 + 0 NA Intergenic Intergenic -108036 ENSMUSG00000099508.1 ENSMUSG00000099508 ENSMUST00000189233 1700030L20Rik lincRNA Interval_69290 chr16 91945421 91947627 + 0 NA intron (ENSMUSG00000087190.2, intron 2 of 5) antisense-intron (ENSMUSG00000087190.2, intron 2 of 5) -2376 ENSMUSG00000099268.1 ENSMUSG00000099268 ENSMUST00000184087 Gm27773 miRNA Interval_32822 chr11 111121059 111122208 + 0 NA Intergenic Intergenic 55469 ENSMUSG00000041695.2 ENSMUSG00000041695 ENSMUST00000042970 Kcnj2 protein_coding Interval_110789 chr4 8406386 8406762 + 0 NA Intergenic Intergenic 47673 ENSMUSG00000103127.1 ENSMUSG00000103127 ENSMUST00000194755 Gm37386 TEC Interval_50860 chr14 20266200 20267350 + 0 NA intron (ENSMUSG00000023387.8, intron 1 of 4) protein_coding-intron (ENSMUSG00000023387.8, intron 1 of 4) 641 ENSMUSG00000023387.8 ENSMUSG00000023387 ENSMUST00000024155 Kcnk16 protein_coding Interval_88107 chr19 59189040 59189559 + 0 NA Intergenic Intergenic 8644 ENSMUSG00000117834.1 ENSMUSG00000117834 ENSMUST00000236019 Gm50429 processed_pseudogene Interval_155060 chr8 26033384 26033603 + 0 NA intron (ENSMUSG00000037234.17, intron 2 of 3) protein_coding-intron (ENSMUSG00000037234.17, intron 21 of 21) 6548 ENSMUSG00000037234.17 ENSMUSG00000037234 ENSMUST00000209542 Hook3 protein_coding Interval_5682 chr1 90891951 90892332 + 0 NA Intergenic Intergenic -20722 ENSMUSG00000103978.1 ENSMUSG00000103978 ENSMUST00000194161 4930474B08Rik TEC Interval_149936 chr7 102883324 102883751 + 0 NA TTS (ENSMUSG00000062142.5) protein_coding-TTS (ENSMUSG00000062142.5) 6415 ENSMUSG00000073965.1 ENSMUSG00000073965 ENSMUST00000098216 Olfr568 protein_coding Interval_22682 chr11 12937324 12937887 + 0 NA exon (ENSMUSG00000083859.1, exon 1 of 1) processed_pseudogene-exon (ENSMUSG00000083859.1, exon 1 of 1) 333 ENSMUSG00000083859.1 ENSMUSG00000083859 ENSMUST00000118518 Gm12003 processed_pseudogene Interval_133500 chr6 5882730 5883656 + 0 NA intron (ENSMUSG00000029757.16, intron 6 of 16) protein_coding-intron (ENSMUSG00000029757.16, intron 5 of 15) 94200 ENSMUSG00000085416.1 ENSMUSG00000085416 ENSMUST00000130004 1700019G24Rik antisense Interval_63888 chr16 4276457 4277979 + 0 NA Intergenic Intergenic 43462 ENSMUSG00000084304.1 ENSMUSG00000084304 ENSMUST00000120290 Gm6142 processed_pseudogene Interval_69731 chr16 95916898 95919435 + 0 NA intron (ENSMUSG00000117232.1, intron 1 of 3) lincRNA-intron (ENSMUSG00000117232.1, intron 1 of 3) 17768 ENSMUSG00000085903.1 ENSMUSG00000085903 ENSMUST00000144984 Gm15340 lincRNA Interval_23382 chr11 22070585 22070841 + 0 NA intron (ENSMUSG00000042302.14, intron 15 of 24) protein_coding-intron (ENSMUSG00000042302.14, intron 14 of 23) -69003 ENSMUSG00000005917.15 ENSMUSG00000005917 ENSMUST00000147486 Otx1 protein_coding Interval_102296 chr3 21168628 21168979 + 0 NA Intergenic Intergenic -54800 ENSMUSG00000106051.1 ENSMUSG00000106051 ENSMUST00000196453 Gm43160 processed_pseudogene Interval_112731 chr4 44473060 44473966 + 0 NA Intergenic Intergenic -60918 ENSMUSG00000077587.1 ENSMUSG00000077587 ENSMUST00000104399 Gm24376 snoRNA Interval_120107 chr4 141874323 141875922 + 0 NA promoter-TSS (ENSMUSG00000040659.3) protein_coding-promoter-TSS (ENSMUSG00000040659.3) -202 ENSMUSG00000040659.3 ENSMUSG00000040659 ENSMUST00000036854 Efhd2 protein_coding Interval_78916 chr18 21585603 21586518 + 0 NA intron (ENSMUSG00000042514.11, intron 3 of 8) protein_coding-intron (ENSMUSG00000042514.11, intron 2 of 7) -65388 ENSMUSG00000043168.12 ENSMUSG00000043168 ENSMUST00000139804 4930426D05Rik antisense Interval_17558 chr10 77741945 77742399 + 0 NA exon (ENSMUSG00000112864.1, exon 1 of 1) protein_coding-exon (ENSMUSG00000112864.1, exon 1 of 1) 466 ENSMUSG00000112864.1 ENSMUSG00000112864 ENSMUST00000218133 Gm18596 protein_coding Interval_94946 chr2 102100704 102100946 + 0 NA intron (ENSMUSG00000048058.17, intron 2 of 5) protein_coding-intron (ENSMUSG00000048058.17, intron 2 of 5) 37294 ENSMUSG00000048058.17 ENSMUSG00000048058 ENSMUST00000127888 Ldlrad3 protein_coding Interval_160871 chr8 114400275 114400843 + 0 NA Intergenic Intergenic -17527 ENSMUSG00000008874.3 ENSMUSG00000008874 ENSMUST00000009018 Clec3a protein_coding Interval_87424 chr19 49984296 49984993 + 0 NA Intergenic Intergenic 46091 ENSMUSG00000062083.1 ENSMUSG00000062083 ENSMUST00000071866 Rpl13a-ps1 processed_pseudogene Interval_154529 chr8 18977217 18977409 + 0 NA intron (ENSMUSG00000053678.7, intron 1 of 1) protein_coding-intron (ENSMUSG00000053678.7, intron 1 of 1) 943 ENSMUSG00000053678.7 ENSMUSG00000053678 ENSMUST00000066258 Defb40 protein_coding Interval_75443 chr17 66570517 66570729 + 0 NA intron (ENSMUSG00000024105.3, intron 2 of 3) protein_coding-intron (ENSMUSG00000024105.3, intron 2 of 3) 23998 ENSMUSG00000024105.3 ENSMUSG00000024105 ENSMUST00000024914 Themis3 protein_coding Interval_79340 chr18 30714210 30714983 + 0 NA Intergenic Intergenic -105706 ENSMUSG00000117526.1 ENSMUSG00000117526 ENSMUST00000235078 Gm41780 processed_pseudogene Interval_132684 chr5 147136684 147136936 + 0 NA Intergenic Intergenic -35757 ENSMUSG00000083988.1 ENSMUSG00000083988 ENSMUST00000120308 Rps10-ps4 processed_pseudogene Interval_45535 chr13 55704128 55705169 + 0 NA Intergenic Intergenic 11524 ENSMUSG00000045767.9 ENSMUSG00000045767 ENSMUST00000057844 B230219D22Rik protein_coding Interval_155013 chr8 25690569 25690942 + 0 NA intron (ENSMUSG00000054823.16, intron 14 of 22) protein_coding-intron (ENSMUSG00000054823.16, intron 13 of 22) -1391 ENSMUSG00000109679.1 ENSMUSG00000109679 ENSMUST00000210903 Gm45342 TEC Interval_18596 chr10 88321433 88322168 + 0 NA Intergenic Intergenic -11668 ENSMUSG00000112715.1 ENSMUSG00000112715 ENSMUST00000218701 Gm48476 processed_pseudogene Interval_7724 chr1 133293117 133293602 + 0 NA exon (ENSMUSG00000041757.17, exon 1 of 1) protein_coding-exon (ENSMUSG00000041757.17, exon 1 of 1) -16468 ENSMUSG00000098306.9 ENSMUSG00000098306 ENSMUST00000183489 Gm28040 protein_coding Interval_2400 chr1 39001115 39001572 + 0 NA Intergenic Intergenic 8665 ENSMUSG00000103046.1 ENSMUSG00000103046 ENSMUST00000194994 Gm37309 TEC Interval_128868 chr5 115751605 115752593 + 0 NA Intergenic Intergenic 50060 ENSMUSG00000083833.4 ENSMUSG00000083833 ENSMUST00000118829 Gm13841 processed_pseudogene Interval_143845 chr7 16705822 16706381 + 0 NA Intergenic Intergenic -11732 ENSMUSG00000108370.1 ENSMUSG00000108370 ENSMUST00000206386 Gm8209 processed_pseudogene Interval_153769 chr8 8102011 8102569 + 0 NA intron (ENSMUSG00000109127.1, intron 3 of 5) lincRNA-intron (ENSMUSG00000109127.1, intron 3 of 5) 35624 ENSMUSG00000109566.1 ENSMUSG00000109566 ENSMUST00000207352 Gm31401 lincRNA Interval_123741 chr5 35088741 35090147 + 0 NA Intergenic Intergenic 13070 ENSMUSG00000029103.16 ENSMUSG00000029103 ENSMUST00000132754 Lrpap1 protein_coding Interval_101951 chr3 12919617 12920642 + 0 NA Intergenic Intergenic -26715 ENSMUSG00000103950.1 ENSMUSG00000103950 ENSMUST00000192577 Gm8939 processed_pseudogene Interval_15540 chr10 50915374 50916041 + 0 NA intron (ENSMUSG00000019913.4, intron 8 of 10) protein_coding-intron (ENSMUSG00000019913.4, intron 8 of 10) 20953 ENSMUSG00000019913.4 ENSMUSG00000019913 ENSMUST00000020071 Sim1 protein_coding Interval_168666 chr9 85684757 85686114 + 0 NA Intergenic Intergenic 33103 ENSMUSG00000035941.15 ENSMUSG00000035941 ENSMUST00000186447 Ibtk protein_coding Interval_45786 chr13 58070406 58070999 + 0 NA intron (ENSMUSG00000014164.15, intron 4 of 14) protein_coding-intron (ENSMUSG00000014164.15, intron 6 of 16) 42890 ENSMUSG00000014164.15 ENSMUSG00000014164 ENSMUST00000160860 Klhl3 protein_coding Interval_101816 chr3 9696033 9696372 + 0 NA intron (ENSMUSG00000027508.15, intron 7 of 8) protein_coding-intron (ENSMUSG00000027508.15, intron 6 of 7) 39682 ENSMUSG00000103876.1 ENSMUSG00000103876 ENSMUST00000195844 Gm17806 processed_pseudogene Interval_173391 chrX 86728438 86729715 + 0 NA Intergenic Intergenic -63398 ENSMUSG00000083779.1 ENSMUSG00000083779 ENSMUST00000122089 Gm14775 processed_pseudogene Interval_130359 chr5 126694675 126694861 + 0 NA Intergenic Intergenic -12146 ENSMUSG00000105673.1 ENSMUSG00000105673 ENSMUST00000197352 1700081B01Rik lincRNA Interval_153875 chr8 10420541 10421670 + 0 NA intron (ENSMUSG00000039057.11, intron 16 of 34) protein_coding-intron (ENSMUSG00000039057.11, intron 15 of 34) 171817 ENSMUSG00000039057.11 ENSMUSG00000039057 ENSMUST00000042103 Myo16 protein_coding Interval_51538 chr14 29978110 29979114 + 0 NA exon (ENSMUSG00000015971.5, exon 1 of 1) protein_coding-exon (ENSMUSG00000015971.5, exon 1 of 1) -3592 ENSMUSG00000015971.5 ENSMUSG00000015971 ENSMUST00000225368 Actr8 protein_coding Interval_37454 chr12 69093243 69093515 + 0 NA Intergenic Intergenic 26968 ENSMUSG00000113716.1 ENSMUSG00000113716 ENSMUST00000222118 Gm47518 lincRNA Interval_51339 chr14 26526116 26526761 + 0 NA intron (ENSMUSG00000021870.17, intron 1 of 22) protein_coding-intron (ENSMUSG00000021870.17, intron 1 of 22) 11884 ENSMUSG00000078128.1 ENSMUSG00000078128 ENSMUST00000104927 Gm2178 processed_pseudogene Interval_86647 chr19 42272178 42272755 + 0 NA intron (ENSMUSG00000042401.8, intron 14 of 14) protein_coding-intron (ENSMUSG00000042401.8, intron 14 of 14) -2498 ENSMUSG00000076323.1 ENSMUSG00000076323 ENSMUST00000102368 Gm26339 miRNA Interval_138464 chr6 88436667 88437724 + 0 NA intron (ENSMUSG00000033216.9, intron 1 of 5) protein_coding-intron (ENSMUSG00000033216.9, intron 1 of 6) -8492 ENSMUSG00000107561.1 ENSMUSG00000107561 ENSMUST00000203049 Gm44264 antisense Interval_86452 chr19 40639606 40640197 + 0 NA intron (ENSMUSG00000048120.16, intron 1 of 9) protein_coding-intron (ENSMUSG00000048120.16, intron 1 of 9) -4245 ENSMUSG00000117952.1 ENSMUSG00000117952 ENSMUST00000235613 Gm50132 sense_intronic Interval_69768 chr16 96135465 96136521 + 0 NA Intergenic Intergenic -9414 ENSMUSG00000023147.17 ENSMUSG00000023147 ENSMUST00000232884 Get1 protein_coding Interval_58850 chr15 39149404 39149725 + 0 NA Intergenic Intergenic -3077 ENSMUSG00000084562.1 ENSMUSG00000084562 ENSMUST00000122613 n-R5s39 rRNA Interval_118656 chr4 133025099 133025586 + 0 NA intron (ENSMUSG00000037692.14, intron 2 of 8) protein_coding-intron (ENSMUSG00000037692.14, intron 1 of 5) 13504 ENSMUSG00000037692.14 ENSMUSG00000037692 ENSMUST00000148518 Ahdc1 protein_coding Interval_22240 chr11 7879927 7881531 + 0 NA Intergenic Intergenic 5776 ENSMUSG00000098853.1 ENSMUSG00000098853 ENSMUST00000157263 Gm27393 snRNA Interval_51288 chr14 25754622 25755733 + 0 NA intron (ENSMUSG00000055538.7, intron 2 of 3) protein_coding-intron (ENSMUSG00000055538.7, intron 2 of 3) -35385 ENSMUSG00000055538.7 ENSMUSG00000055538 ENSMUST00000184642 Zcchc24 protein_coding Interval_69136 chr16 90878209 90879434 + 0 NA intron (ENSMUSG00000039903.18, intron 3 of 5) protein_coding-intron (ENSMUSG00000039903.18, intron 4 of 7) -27858 ENSMUSG00000116543.1 ENSMUSG00000116543 ENSMUST00000232254 Gm36363 antisense Interval_29427 chr11 83936193 83936794 + 0 NA Intergenic Intergenic -9762 ENSMUSG00000020677.7 ENSMUSG00000020677 ENSMUST00000130982 Ddx52 protein_coding Interval_78342 chr18 12072699 12073050 + 0 NA intron (ENSMUSG00000049411.15, intron 4 of 8) protein_coding-intron (ENSMUSG00000049411.15, intron 4 of 12) 48606 ENSMUSG00000049411.15 ENSMUSG00000049411 ENSMUST00000234833 Tmem241 protein_coding Interval_126538 chr5 89980562 89980746 + 0 NA Intergenic Intergenic -97320 ENSMUSG00000043635.12 ENSMUSG00000043635 ENSMUST00000196507 Adamts3 protein_coding Interval_162005 chr8 124376908 124377161 + 0 NA intron (ENSMUSG00000050751.14, intron 3 of 6) protein_coding-intron (ENSMUSG00000050751.14, intron 3 of 6) 19796 ENSMUSG00000064664.1 ENSMUSG00000064664 ENSMUST00000082730 Gm24459 snRNA Interval_109004 chr3 134718685 134719544 + 0 NA Intergenic Intergenic -88349 ENSMUSG00000097031.2 ENSMUSG00000097031 ENSMUST00000180764 Gm26820 lincRNA Interval_105090 chr3 81088787 81089215 + 0 NA intron (ENSMUSG00000028019.9, intron 1 of 5) protein_coding-intron (ENSMUSG00000028019.9, intron 1 of 5) -48564 ENSMUSG00000085106.1 ENSMUSG00000085106 ENSMUST00000146657 Gm16000 antisense Interval_167603 chr9 70987169 70988164 + 0 NA Intergenic Intergenic -35440 ENSMUSG00000032207.10 ENSMUSG00000032207 ENSMUST00000215814 Lipc protein_coding Interval_165132 chr9 44723648 44724795 + 0 NA intron (ENSMUSG00000048537.16, intron 3 of 21) protein_coding-intron (ENSMUSG00000048537.16, intron 4 of 21) -10956 ENSMUSG00000048537.16 ENSMUSG00000048537 ENSMUST00000123003 Phldb1 protein_coding Interval_33015 chr11 113686887 113687278 + 0 NA intron (ENSMUSG00000041623.17, intron 1 of 1) protein_coding-intron (ENSMUSG00000041623.17, intron 1 of 4) 1996 ENSMUSG00000041623.17 ENSMUSG00000041623 ENSMUST00000153732 D11Wsu47e protein_coding Interval_93888 chr2 78021779 78022341 + 0 NA Intergenic Intergenic -29117 ENSMUSG00000085431.7 ENSMUSG00000085431 ENSMUST00000144728 4930440I19Rik lincRNA Interval_72185 chr17 28475225 28476155 + 0 NA intron (ENSMUSG00000024222.17, intron 1 of 10) protein_coding-intron (ENSMUSG00000024222.17, intron 1 of 10) -14595 ENSMUSG00000117294.1 ENSMUSG00000117294 ENSMUST00000233091 Gm49839 TEC Interval_32490 chr11 107865118 107865830 + 0 NA Intergenic Intergenic 13729 ENSMUSG00000098991.1 ENSMUSG00000098991 ENSMUST00000184579 Gm27595 rRNA Interval_45162 chr13 52857508 52858160 + 0 NA intron (ENSMUSG00000021460.17, intron 5 of 9) protein_coding-intron (ENSMUSG00000021460.17, intron 6 of 9) 55112 ENSMUSG00000021460.17 ENSMUSG00000021460 ENSMUST00000151469 Auh protein_coding Interval_77111 chr17 86648941 86649204 + 0 NA intron (ENSMUSG00000045038.14, intron 14 of 14) protein_coding-intron (ENSMUSG00000045038.14, intron 15 of 15) 36424 ENSMUSG00000117568.1 ENSMUSG00000117568 ENSMUST00000234033 Gm18832 processed_pseudogene Interval_78212 chr18 10181217 10182692 + 0 NA promoter-TSS (ENSMUSG00000024290.9) protein_coding-promoter-TSS (ENSMUSG00000024290.9) 12827 ENSMUSG00000117510.1 ENSMUSG00000117510 ENSMUST00000234511 Gm50032 processed_pseudogene Interval_41304 chr12 112598835 112600611 + 0 NA intron (ENSMUSG00000037679.9, intron 1 of 1) protein_coding-intron (ENSMUSG00000037679.9, intron 1 of 22) -4934 ENSMUSG00000037679.9 ENSMUSG00000037679 ENSMUST00000222275 Inf2 protein_coding Interval_1310 chr1 20284772 20285141 + 0 NA intron (ENSMUSG00000043760.16, intron 51 of 66) protein_coding-intron (ENSMUSG00000043760.16, intron 51 of 66) -71496 ENSMUSG00000089914.2 ENSMUSG00000089914 ENSMUST00000161509 4930486I03Rik antisense Interval_41310 chr12 112627029 112627484 + 0 NA intron (ENSMUSG00000011148.14, intron 1 of 3) protein_coding-intron (ENSMUSG00000011148.14, intron 1 of 12) 7179 ENSMUSG00000011148.14 ENSMUSG00000011148 ENSMUST00000221720 Adssl1 protein_coding Interval_55747 chr14 99536440 99537925 + 0 NA intron (ENSMUSG00000115580.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000115580.1, intron 1 of 2) 14637 ENSMUSG00000115580.1 ENSMUSG00000115580 ENSMUST00000228876 Gm41230 lincRNA Interval_122898 chr5 27042154 27043177 + 0 NA intron (ENSMUSG00000061576.15, intron 1 of 25) protein_coding-intron (ENSMUSG00000061576.15, intron 1 of 25) -6728 ENSMUSG00000061576.15 ENSMUSG00000061576 ENSMUST00000134175 Dpp6 protein_coding Interval_12746 chr10 4671996 4672219 + 0 NA TTS (ENSMUSG00000019768.16) protein_coding-TTS (ENSMUSG00000019768.16) 60514 ENSMUSG00000019768.16 ENSMUSG00000019768 ENSMUST00000137012 Esr1 protein_coding Interval_56357 chr14 118027702 118028612 + 0 NA promoter-TSS (ENSMUSG00000022129.4) protein_coding-promoter-TSS (ENSMUSG00000022129.4) -622 ENSMUSG00000022129.4 ENSMUSG00000022129 ENSMUST00000227850 Dct protein_coding Interval_124400 chr5 45514692 45516358 + 0 NA Intergenic Intergenic -4704 ENSMUSG00000015804.14 ENSMUSG00000015804 ENSMUST00000139586 Med28 protein_coding Interval_88488 chr2 5569035 5569969 + 0 NA intron (ENSMUSG00000039145.16, intron 1 of 1) protein_coding-intron (ENSMUSG00000039145.16, intron 1 of 10) -34069 ENSMUSG00000082013.1 ENSMUSG00000082013 ENSMUST00000117145 Gm13216 processed_pseudogene Interval_103033 chr3 34647887 34651293 + 0 NA promoter-TSS (ENSMUSG00000074637.7) protein_coding-promoter-TSS (ENSMUSG00000074637.7) -815 ENSMUSG00000074637.7 ENSMUSG00000074637 ENSMUST00000099151 Sox2 protein_coding Interval_7371 chr1 130633767 130634463 + 0 NA TTS (ENSMUSG00000026405.14) protein_coding-TTS (ENSMUSG00000026405.14) -4503 ENSMUSG00000042554.10 ENSMUSG00000042554 ENSMUST00000142416 Zp3r protein_coding Interval_26401 chr11 57651406 57651895 + 0 NA intron (ENSMUSG00000020520.14, intron 1 of 2) protein_coding-intron (ENSMUSG00000020520.14, intron 1 of 11) -2156 ENSMUSG00000085719.1 ENSMUSG00000085719 ENSMUST00000142486 4933424L21Rik antisense Interval_39053 chr12 84715205 84716252 + 0 NA Intergenic Intergenic -16974 ENSMUSG00000071234.3 ENSMUSG00000071234 ENSMUST00000221793 Syndig1l protein_coding Interval_125519 chr5 67931452 67932711 + 0 NA intron (ENSMUSG00000095346.1, intron 1 of 1) protein_coding-intron (ENSMUSG00000095346.1, intron 1 of 1) -9588 ENSMUSG00000094719.4 ENSMUSG00000094719 ENSMUST00000201798 Gm5108 protein_coding Interval_24176 chr11 30923197 30923518 + 0 NA intron (ENSMUSG00000020305.13, intron 1 of 9) protein_coding-intron (ENSMUSG00000020305.13, intron 1 of 9) -15437 ENSMUSG00000084146.1 ENSMUSG00000084146 ENSMUST00000120359 Gm12104 processed_pseudogene Interval_134144 chr6 21850927 21852511 + 0 NA promoter-TSS (ENSMUSG00000106709.1) antisense-promoter-TSS (ENSMUSG00000106709.1) 109 ENSMUSG00000029669.14 ENSMUSG00000029669 ENSMUST00000202353 Tspan12 protein_coding Interval_51240 chr14 25484151 25484346 + 0 NA intron (ENSMUSG00000007817.15, intron 1 of 23) protein_coding-intron (ENSMUSG00000007817.15, intron 1 of 23) 4194 ENSMUSG00000114539.1 ENSMUSG00000114539 ENSMUST00000224666 Gm47921 sense_intronic Interval_165670 chr9 50821245 50822731 + 0 NA intron (ENSMUSG00000032059.13, intron 1 of 1) protein_coding-intron (ENSMUSG00000032059.13, intron 13 of 14) 19919 ENSMUSG00000032059.13 ENSMUSG00000032059 ENSMUST00000162596 Alg9 protein_coding Interval_46238 chr13 62877194 62877477 + 0 NA intron (ENSMUSG00000069805.10, intron 1 of 6) protein_coding-intron (ENSMUSG00000069805.10, intron 1 of 6) -4577 ENSMUSG00000069805.10 ENSMUSG00000069805 ENSMUST00000134814 Fbp1 protein_coding Interval_69898 chr17 3044027 3044801 + 0 NA exon (ENSMUSG00000068141.5, exon 1 of 1) processed_pseudogene-exon (ENSMUSG00000068141.5, exon 1 of 1) 319 ENSMUSG00000068141.5 ENSMUSG00000068141 ENSMUST00000089221 Gm10232 processed_pseudogene Interval_42092 chr13 8608702 8609389 + 0 NA intron (ENSMUSG00000052551.16, intron 3 of 10) protein_coding-intron (ENSMUSG00000052551.16, intron 3 of 9) 56025 ENSMUSG00000113742.1 ENSMUSG00000113742 ENSMUST00000220604 Gm48262 TEC Interval_147918 chr7 75547561 75548125 + 0 NA intron (ENSMUSG00000066406.16, intron 2 of 5) protein_coding-intron (ENSMUSG00000066406.16, intron 2 of 36) -12771 ENSMUSG00000108557.1 ENSMUSG00000108557 ENSMUST00000205544 Gm44835 TEC Interval_115099 chr4 89711448 89711975 + 0 NA Intergenic Intergenic 32275 ENSMUSG00000043753.2 ENSMUSG00000043753 ENSMUST00000052478 Dmrta1 protein_coding Interval_94468 chr2 91429935 91431012 + 0 NA intron (ENSMUSG00000040591.18, intron 1 of 3) protein_coding-intron (ENSMUSG00000040591.18, intron 1 of 8) 14170 ENSMUSG00000040591.18 ENSMUSG00000040591 ENSMUST00000141262 1110051M20Rik protein_coding Interval_88589 chr2 6420040 6420244 + 0 NA promoter-TSS (ENSMUSG00000039046.15) protein_coding-promoter-TSS (ENSMUSG00000039046.15) -780 ENSMUSG00000039046.15 ENSMUSG00000039046 ENSMUST00000150515 Usp6nl protein_coding Interval_103708 chr3 51795948 51796154 + 0 NA exon (ENSMUSG00000061143.15, exon 1 of 1) protein_coding-exon (ENSMUSG00000061143.15, exon 1 of 1) 523 ENSMUSG00000061143.15 ENSMUSG00000061143 ENSMUST00000193568 Maml3 protein_coding Interval_63333 chr15 100392578 100394485 + 0 NA exon (ENSMUSG00000023030.16, exon 16 of 16) protein_coding-exon (ENSMUSG00000023030.16, exon 16 of 16) 28986 ENSMUSG00000093550.7 ENSMUSG00000093550 ENSMUST00000177211 Higd1c protein_coding Interval_72167 chr17 28384450 28384747 + 0 NA Intergenic Intergenic -28424 ENSMUSG00000037446.14 ENSMUSG00000037446 ENSMUST00000150341 Tulp1 protein_coding Interval_110689 chr4 6452718 6454342 + 0 NA promoter-TSS (ENSMUSG00000028245.15) protein_coding-promoter-TSS (ENSMUSG00000028245.15) 566 ENSMUSG00000028245.15 ENSMUSG00000028245 ENSMUST00000124656 Nsmaf protein_coding Interval_26427 chr11 57790941 57791708 + 0 NA Intergenic Intergenic 10093 ENSMUSG00000087165.7 ENSMUSG00000087165 ENSMUST00000140069 2010001A14Rik processed_transcript Interval_29539 chr11 84771065 84771375 + 0 NA intron (ENSMUSG00000087407.1, intron 2 of 2) lincRNA-intron (ENSMUSG00000087407.1, intron 2 of 2) 6609 ENSMUSG00000087407.1 ENSMUSG00000087407 ENSMUST00000155046 Gm11431 lincRNA Interval_96743 chr2 127634008 127634640 + 0 NA TTS (ENSMUSG00000027375.14) protein_coding-TTS (ENSMUSG00000027375.14) 22371 ENSMUSG00000027375.14 ENSMUSG00000027375 ENSMUST00000028853 Mal protein_coding Interval_97509 chr2 138256173 138257412 + 0 NA intron (ENSMUSG00000062098.11, intron 1 of 3) protein_coding-intron (ENSMUSG00000062098.11, intron 1 of 4) 130 ENSMUSG00000062098.11 ENSMUSG00000062098 ENSMUST00000075410 Btbd3 protein_coding Interval_7121 chr1 126491658 126493171 + 0 NA intron (ENSMUSG00000049690.15, intron 3 of 6) protein_coding-intron (ENSMUSG00000049690.15, intron 3 of 12) 328 ENSMUSG00000049690.15 ENSMUSG00000049690 ENSMUST00000162647 Nckap5 protein_coding Interval_116837 chr4 117590088 117590685 + 0 NA intron (ENSMUSG00000033423.16, intron 4 of 7) protein_coding-intron (ENSMUSG00000033423.16, intron 5 of 8) 20252 ENSMUSG00000087807.1 ENSMUSG00000087807 ENSMUST00000157182 Gm25559 miRNA Interval_50964 chr14 21276696 21277041 + 0 NA intron (ENSMUSG00000039197.10, intron 6 of 7) protein_coding-intron (ENSMUSG00000039197.10, intron 6 of 10) 13244 ENSMUSG00000088456.1 ENSMUSG00000088456 ENSMUST00000157831 Gm26372 misc_RNA Interval_91614 chr2 44596839 44597162 + 0 NA intron (ENSMUSG00000036890.13, intron 4 of 4) protein_coding-intron (ENSMUSG00000036890.13, intron 3 of 7) 168065 ENSMUSG00000088124.1 ENSMUSG00000088124 ENSMUST00000157499 Gm22867 snRNA Interval_159177 chr8 91378916 91379206 + 0 NA intron (ENSMUSG00000055932.15, intron 1 of 6) protein_coding-intron (ENSMUSG00000055932.15, intron 1 of 8) 12884 ENSMUSG00000110233.1 ENSMUSG00000110233 ENSMUST00000209572 Gm45427 TEC Interval_169574 chr9 99227313 99227719 + 0 NA Intergenic Intergenic -6949 ENSMUSG00000101498.1 ENSMUSG00000101498 ENSMUST00000185530 Gm2950 processed_pseudogene Interval_17551 chr10 77677226 77678435 + 0 NA Intergenic Intergenic 3257 ENSMUSG00000112912.1 ENSMUSG00000112912 ENSMUST00000220424 Gm48160 processed_pseudogene Interval_77283 chr17 87773033 87775201 + 0 NA intron (ENSMUSG00000050138.8, intron 1 of 1) protein_coding-intron (ENSMUSG00000050138.8, intron 1 of 1) 23877 ENSMUSG00000050138.8 ENSMUSG00000050138 ENSMUST00000055221 Kcnk12 protein_coding Interval_2661 chr1 43071372 43071572 + 0 NA TTS (ENSMUSG00000070939.9) protein_coding-TTS (ENSMUSG00000070939.9) 15205 ENSMUSG00000100269.1 ENSMUSG00000100269 ENSMUST00000185980 Gm28782 antisense Interval_2976 chr1 51815646 51815860 + 0 NA intron (ENSMUSG00000018417.14, intron 6 of 6) protein_coding-intron (ENSMUSG00000018417.14, intron 6 of 30) 33365 ENSMUSG00000101724.1 ENSMUSG00000101724 ENSMUST00000186428 Gm29453 sense_intronic Interval_46773 chr13 70160767 70161113 + 0 NA intron (ENSMUSG00000113573.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000113573.1, intron 1 of 2) -7892 ENSMUSG00000077594.1 ENSMUSG00000077594 ENSMUST00000104406 Gm26018 snoRNA Interval_150417 chr7 110269593 110270229 + 0 NA exon (ENSMUSG00000031015.8, exon 7 of 12) protein_coding-exon (ENSMUSG00000031015.8, exon 7 of 12) 11616 ENSMUSG00000109799.1 ENSMUSG00000109799 ENSMUST00000210796 Gm45515 antisense Interval_37059 chr12 57194681 57194888 + 0 NA intron (ENSMUSG00000035472.14, intron 1 of 9) protein_coding-intron (ENSMUSG00000035472.14, intron 1 of 9) -34141 ENSMUSG00000035472.14 ENSMUSG00000035472 ENSMUST00000160892 Slc25a21 protein_coding Interval_112843 chr4 45478202 45478711 + 0 NA intron (ENSMUSG00000044813.15, intron 2 of 2) protein_coding-intron (ENSMUSG00000044813.15, intron 2 of 5) 4346 ENSMUSG00000044813.15 ENSMUSG00000044813 ENSMUST00000147448 Shb protein_coding Interval_111648 chr4 25148106 25148301 + 0 NA intron (ENSMUSG00000085885.1, intron 2 of 4) processed_transcript-intron (ENSMUSG00000085885.1, intron 2 of 4) 94673 ENSMUSG00000028259.13 ENSMUSG00000028259 ENSMUST00000108204 Fhl5 protein_coding Interval_90554 chr2 31119781 31120090 + 0 NA intron (ENSMUSG00000075415.13, intron 1 of 5) protein_coding-intron (ENSMUSG00000075415.13, intron 1 of 13) -3623 ENSMUSG00000075415.13 ENSMUSG00000075415 ENSMUST00000136085 Fnbp1 protein_coding Interval_118462 chr4 131812843 131813443 + 0 NA intron (ENSMUSG00000028909.17, intron 7 of 25) protein_coding-intron (ENSMUSG00000028909.17, intron 7 of 30) -14773 ENSMUSG00000028909.17 ENSMUSG00000028909 ENSMUST00000139641 Ptpru protein_coding Interval_15770 chr10 56376019 56377489 + 0 NA promoter-TSS (ENSMUSG00000050953.10) protein_coding-promoter-TSS (ENSMUSG00000050953.10) -695 ENSMUSG00000050953.10 ENSMUSG00000050953 ENSMUST00000220069 Gja1 protein_coding Interval_127454 chr5 104057552 104058278 + 0 NA intron (ENSMUSG00000029310.13, intron 4 of 5) protein_coding-intron (ENSMUSG00000029310.13, intron 4 of 7) 9912 ENSMUSG00000093690.1 ENSMUSG00000093690 ENSMUST00000176065 Mir5619 miRNA Interval_111656 chr4 25331045 25331966 + 0 NA Intergenic Intergenic 23024 ENSMUSG00000081786.1 ENSMUSG00000081786 ENSMUST00000121976 Gm11897 processed_pseudogene Interval_172000 chr9 123366430 123367821 + 0 NA exon (ENSMUSG00000035202.8, exon 1 of 1) protein_coding-exon (ENSMUSG00000035202.8, exon 1 of 1) 171 ENSMUSG00000035202.8 ENSMUSG00000035202 ENSMUST00000215087 Lars2 protein_coding Interval_161294 chr8 119582376 119584227 + 0 NA intron (ENSMUSG00000031831.6, intron 5 of 11) protein_coding-intron (ENSMUSG00000031831.6, intron 5 of 11) 8066 ENSMUSG00000031831.6 ENSMUSG00000031831 ENSMUST00000093100 Dnaaf1 protein_coding Interval_172758 chrX 48365692 48366365 + 0 NA intron (ENSMUSG00000036959.15, intron 1 of 3) protein_coding-intron (ENSMUSG00000036959.15, intron 2 of 13) 23967 ENSMUSG00000036959.15 ENSMUSG00000036959 ENSMUST00000142160 Bcorl1 protein_coding Interval_88182 chr19 60379075 60379718 + 0 NA Intergenic Intergenic 88908 ENSMUSG00000045052.3 ENSMUSG00000045052 ENSMUST00000051277 Prlhr protein_coding Interval_59704 chr15 58740021 58740593 + 0 NA Intergenic Intergenic 41644 ENSMUSG00000093677.1 ENSMUSG00000093677 ENSMUST00000176387 Gm20712 sense_overlapping Interval_52311 chr14 44683260 44683607 + 0 NA intron (ENSMUSG00000079265.10, intron 1 of 4) protein_coding-intron (ENSMUSG00000079265.10, intron 1 of 4) -4058 ENSMUSG00000093949.2 ENSMUSG00000093949 ENSMUST00000177550 Gm21754 unprocessed_pseudogene Interval_10257 chr1 167635365 167636072 + 0 NA exon (ENSMUSG00000015843.10, exon 9 of 10) protein_coding-exon (ENSMUSG00000015843.10, exon 9 of 10) 37258 ENSMUSG00000015843.10 ENSMUSG00000015843 ENSMUST00000111380 Rxrg protein_coding Interval_14826 chr10 40317399 40317757 + 0 NA Intergenic Intergenic -15390 ENSMUSG00000075232.6 ENSMUSG00000075232 ENSMUST00000216993 Amd1 protein_coding Interval_52574 chr14 47592649 47594353 + 0 NA Intergenic Intergenic 23975 ENSMUSG00000115571.1 ENSMUSG00000115571 ENSMUST00000228790 Gm6616 processed_pseudogene Interval_23367 chr11 21942170 21942922 + 0 NA Intergenic Intergenic -10594 ENSMUSG00000082874.4 ENSMUSG00000082874 ENSMUST00000120694 Rpl15-ps1 processed_pseudogene Interval_95602 chr2 112717199 112718187 + 0 NA intron (ENSMUSG00000057378.15, intron 65 of 103) protein_coding-intron (ENSMUSG00000057378.15, intron 65 of 102) -61145 ENSMUSG00000057378.15 ENSMUSG00000057378 ENSMUST00000208135 Ryr3 protein_coding Interval_71768 chr17 25959983 25960262 + 0 NA TTS (ENSMUSG00000037326.10) protein_coding-TTS (ENSMUSG00000037326.10) -7557 ENSMUSG00000025727.8 ENSMUSG00000025727 ENSMUST00000162431 A930017K11Rik protein_coding Interval_2013 chr1 35890298 35890800 + 0 NA Intergenic Intergenic 10704 ENSMUSG00000102531.1 ENSMUSG00000102531 ENSMUST00000194261 1110002O04Rik lincRNA Interval_21421 chr10 128505777 128507162 + 0 NA Intergenic Intergenic 5561 ENSMUSG00000099292.1 ENSMUSG00000099292 ENSMUST00000184514 Mir6916 miRNA Interval_12858 chr10 6788537 6789762 + 0 NA promoter-TSS (ENSMUSG00000000766.18) protein_coding-promoter-TSS (ENSMUSG00000000766.18) 340 ENSMUSG00000000766.18 ENSMUSG00000000766 ENSMUST00000148625 Oprm1 protein_coding Interval_122356 chr5 21667214 21668041 + 0 NA intron (ENSMUSG00000044968.16, intron 4 of 4) protein_coding-intron (ENSMUSG00000044968.16, intron 4 of 4) 21814 ENSMUSG00000038525.16 ENSMUSG00000038525 ENSMUST00000139521 Armc10 protein_coding Interval_172796 chrX 49470358 49471014 + 0 NA intron (ENSMUSG00000036198.12, intron 1 of 12) protein_coding-intron (ENSMUSG00000036198.12, intron 1 of 11) -14989 ENSMUSG00000036198.12 ENSMUSG00000036198 ENSMUST00000132784 Arhgap36 protein_coding Interval_125082 chr5 64336287 64337360 + 0 NA intron (ENSMUSG00000029174.18, intron 6 of 8) protein_coding-intron (ENSMUSG00000029174.18, intron 19 of 21) 16567 ENSMUSG00000083100.1 ENSMUSG00000083100 ENSMUST00000121819 Gm6044 processed_pseudogene Interval_44565 chr13 46161237 46162471 + 0 NA Intergenic Intergenic 29192 ENSMUSG00000062282.4 ENSMUSG00000062282 ENSMUST00000072437 Gm10113 lincRNA Interval_150112 chr7 106760550 106761645 + 0 NA Intergenic Intergenic -5700 ENSMUSG00000059087.4 ENSMUSG00000059087 ENSMUST00000074981 Olfr698 protein_coding Interval_147586 chr7 68579382 68580911 + 0 NA Intergenic Intergenic 18708 ENSMUSG00000109375.1 ENSMUSG00000109375 ENSMUST00000208980 Gm44887 processed_pseudogene Interval_111618 chr4 24620559 24621278 + 0 NA intron (ENSMUSG00000040387.16, intron 7 of 7) protein_coding-intron (ENSMUSG00000040387.16, intron 9 of 9) 123047 ENSMUSG00000040387.16 ENSMUSG00000040387 ENSMUST00000144062 Klhl32 protein_coding Interval_169883 chr9 102725885 102726862 + 0 NA intron (ENSMUSG00000032531.15, intron 4 of 4) protein_coding-intron (ENSMUSG00000032531.15, intron 5 of 9) 7805 ENSMUSG00000032531.15 ENSMUSG00000032531 ENSMUST00000136934 Amotl2 protein_coding Interval_162360 chr8 127399083 127399331 + 0 NA TTS (ENSMUSG00000025812.18) protein_coding-TTS (ENSMUSG00000025812.18) -162228 ENSMUSG00000090074.1 ENSMUSG00000090074 ENSMUST00000161478 Gm6921 processed_pseudogene Interval_152459 chr7 133105257 133105709 + 0 NA intron (ENSMUSG00000030970.16, intron 1 of 6) protein_coding-intron (ENSMUSG00000030970.16, intron 1 of 10) 14788 ENSMUSG00000110282.1 ENSMUSG00000110282 ENSMUST00000209529 B930086L07Rik TEC Interval_83785 chr19 4711367 4712801 + 0 NA promoter-TSS (ENSMUSG00000067889.6) protein_coding-promoter-TSS (ENSMUSG00000067889.6) -8995 ENSMUSG00000067889.6 ENSMUSG00000067889 ENSMUST00000238162 Sptbn2 protein_coding Interval_62321 chr15 90124257 90124449 + 0 NA Intergenic Intergenic 49842 ENSMUSG00000116231.1 ENSMUSG00000116231 ENSMUST00000230688 Gm36330 lincRNA Interval_83650 chr19 3468358 3468539 + 0 NA intron (ENSMUSG00000024908.15, intron 6 of 7) protein_coding-intron (ENSMUSG00000024908.15, intron 18 of 22) -17642 ENSMUSG00000114315.1 ENSMUSG00000114315 ENSMUST00000224419 Gm48696 antisense Interval_108984 chr3 133938706 133938895 + 0 NA intron (ENSMUSG00000097911.2, intron 1 of 2) antisense-intron (ENSMUSG00000097911.2, intron 1 of 2) -120282 ENSMUSG00000104645.1 ENSMUSG00000104645 ENSMUST00000200327 Gm30484 lincRNA Interval_66700 chr16 36460757 36461631 + 0 NA Intergenic Intergenic -5802 ENSMUSG00000054905.2 ENSMUSG00000054905 ENSMUST00000068182 Stfa3 protein_coding Interval_110810 chr4 8660642 8662111 + 0 NA Intergenic Intergenic 12206 ENSMUSG00000082122.1 ENSMUSG00000082122 ENSMUST00000120923 Gm11809 processed_pseudogene Interval_103907 chr3 54790682 54791349 + 0 NA intron (ENSMUSG00000027796.2, intron 4 of 5) protein_coding-intron (ENSMUSG00000027796.2, intron 4 of 5) 14751 ENSMUSG00000036615.7 ENSMUSG00000036615 ENSMUST00000182084 Rfxap protein_coding Interval_74975 chr17 58668302 58668850 + 0 NA Intergenic Intergenic 74962 ENSMUSG00000046952.9 ENSMUSG00000046952 ENSMUST00000050706 Gm5815 processed_pseudogene Interval_38408 chr12 78779456 78779779 + 0 NA intron (ENSMUSG00000021112.9, intron 1 of 14) protein_coding-intron (ENSMUSG00000021112.9, intron 1 of 14) -26829 ENSMUSG00000088822.1 ENSMUSG00000088822 ENSMUST00000158197 Gm25225 snRNA Interval_55151 chr14 78678455 78679090 + 0 NA intron (ENSMUSG00000034731.11, intron 2 of 29) protein_coding-intron (ENSMUSG00000034731.11, intron 1 of 28) -25038 ENSMUSG00000115107.1 ENSMUSG00000115107 ENSMUST00000228480 Gm18368 processed_pseudogene Interval_52349 chr14 45338151 45338524 + 0 NA TTS (ENSMUSG00000021832.8) protein_coding-TTS (ENSMUSG00000021832.8) 3930 ENSMUSG00000021832.8 ENSMUSG00000021832 ENSMUST00000226739 Psmc6 protein_coding Interval_78228 chr18 10422059 10422266 + 0 NA intron (ENSMUSG00000042942.18, intron 1 of 8) protein_coding-intron (ENSMUSG00000042942.18, intron 1 of 32) -54624 ENSMUSG00000042942.18 ENSMUSG00000042942 ENSMUST00000173261 Greb1l protein_coding Interval_159065 chr8 89294063 89294742 + 0 NA Intergenic Intergenic -106842 ENSMUSG00000069962.3 ENSMUSG00000069962 ENSMUST00000093326 Gm5356 processed_pseudogene Interval_10994 chr1 177822107 177822298 + 0 NA intron (ENSMUSG00000102483.2, intron 2 of 21) protein_coding-intron (ENSMUSG00000102483.2, intron 2 of 21) 13771 ENSMUSG00000102483.2 ENSMUSG00000102483 ENSMUST00000194528 Catspere1 protein_coding Interval_142052 chr6 136797933 136798437 + 0 NA Intergenic Intergenic 6230 ENSMUSG00000096010.2 ENSMUSG00000096010 ENSMUST00000179285 H4f16 protein_coding Interval_174747 chrX 164979925 164981112 + 0 NA promoter-TSS (ENSMUSG00000061778.10) protein_coding-promoter-TSS (ENSMUSG00000061778.10) -74 ENSMUSG00000047757.17 ENSMUSG00000047757 ENSMUST00000057150 Fancb protein_coding Interval_88543 chr2 5963344 5964094 + 0 NA intron (ENSMUSG00000043241.14, intron 3 of 21) protein_coding-intron (ENSMUSG00000043241.14, intron 3 of 21) -51883 ENSMUSG00000025815.13 ENSMUSG00000025815 ENSMUST00000151649 Dhtkd1 protein_coding Interval_81350 chr18 58776669 58776968 + 0 NA Intergenic Intergenic -1607 ENSMUSG00000118337.1 ENSMUSG00000118337 ENSMUST00000235435 Gm50227 lincRNA Interval_115795 chr4 104504727 104505551 + 0 NA intron (ENSMUSG00000028519.16, intron 2 of 14) protein_coding-intron (ENSMUSG00000028519.16, intron 4 of 9) -100157 ENSMUSG00000028519.16 ENSMUSG00000028519 ENSMUST00000149672 Dab1 protein_coding Interval_170608 chr9 109376710 109377069 + 0 NA Intergenic Intergenic -18554 ENSMUSG00000096786.1 ENSMUSG00000096786 ENSMUST00000178055 Gm24641 snRNA Interval_83790 chr19 4726571 4727861 + 0 NA intron (ENSMUSG00000067889.6, intron 7 of 36) protein_coding-intron (ENSMUSG00000067889.6, intron 7 of 36) 6137 ENSMUSG00000067889.6 ENSMUSG00000067889 ENSMUST00000238162 Sptbn2 protein_coding Interval_67059 chr16 42305474 42306716 + 0 NA intron (ENSMUSG00000047261.9, intron 1 of 2) protein_coding-intron (ENSMUSG00000047261.9, intron 1 of 2) -2626 ENSMUSG00000098300.1 ENSMUSG00000098300 ENSMUST00000184886 Mir6540 miRNA Interval_171651 chr9 119956638 119957325 + 0 NA exon (ENSMUSG00000032514.11, exon 15 of 29) protein_coding-exon (ENSMUSG00000032514.11, exon 15 of 29) -4637 ENSMUSG00000032514.11 ENSMUSG00000032514 ENSMUST00000161967 Ttc21a protein_coding Interval_141801 chr6 134607312 134607913 + 0 NA promoter-TSS (ENSMUSG00000107728.1) lincRNA-promoter-TSS (ENSMUSG00000107728.1) 69 ENSMUSG00000107728.1 ENSMUSG00000107728 ENSMUST00000204630 Gm38910 lincRNA Interval_66263 chr16 32711756 32712443 + 0 NA Intergenic Intergenic -14567 ENSMUSG00000098225.1 ENSMUSG00000098225 ENSMUST00000182938 Gm9556 processed_pseudogene Interval_131571 chr5 138193763 138195459 + 0 NA TTS (ENSMUSG00000036968.15) protein_coding-TTS (ENSMUSG00000036968.15) 297 ENSMUSG00000049285.4 ENSMUSG00000049285 ENSMUST00000057773 Mblac1 protein_coding Interval_165923 chr9 54705073 54705839 + 0 NA intron (ENSMUSG00000032285.15, intron 2 of 4) protein_coding-intron (ENSMUSG00000032285.15, intron 1 of 6) -2857 ENSMUSG00000093441.1 ENSMUSG00000093441 ENSMUST00000176884 Mir5710 miRNA Interval_49339 chr13 111325430 111327317 + 0 NA Intergenic Intergenic 35302 ENSMUSG00000081277.1 ENSMUSG00000081277 ENSMUST00000119271 Gm15285 processed_pseudogene Interval_100898 chr2 173229496 173230308 + 0 NA intron (ENSMUSG00000038400.15, intron 3 of 4) protein_coding-intron (ENSMUSG00000038400.15, intron 2 of 3) -11005 ENSMUSG00000027514.14 ENSMUSG00000027514 ENSMUST00000109116 Zbp1 protein_coding Interval_137342 chr6 71537906 71538132 + 0 NA TTS (ENSMUSG00000108278.1) TEC-TTS (ENSMUSG00000108278.1) 3719 ENSMUSG00000108278.1 ENSMUSG00000108278 ENSMUST00000204222 Gm44194 TEC Interval_123772 chr5 35397110 35398212 + 0 NA intron (ENSMUSG00000067438.5, intron 1 of 1) protein_coding-intron (ENSMUSG00000067438.5, intron 1 of 1) 1563 ENSMUSG00000106970.1 ENSMUSG00000106970 ENSMUST00000201640 Gm43377 TEC Interval_136327 chr6 53074467 53074846 + 0 NA Intergenic Intergenic 28772 ENSMUSG00000080759.1 ENSMUSG00000080759 ENSMUST00000119487 Gm15573 processed_pseudogene Interval_46565 chr13 67213978 67214658 + 0 NA Intergenic Intergenic 15651 ENSMUSG00000114771.1 ENSMUSG00000114771 ENSMUST00000225201 Gm49064 lincRNA Interval_74108 chr17 46592953 46593205 + 0 NA intron (ENSMUSG00000023972.10, intron 1 of 19) protein_coding-intron (ENSMUSG00000023972.10, intron 1 of 19) -20129 ENSMUSG00000023972.10 ENSMUSG00000023972 ENSMUST00000044442 Ptk7 protein_coding Interval_57498 chr15 11859990 11861093 + 0 NA intron (ENSMUSG00000022206.7, intron 3 of 7) protein_coding-intron (ENSMUSG00000022206.7, intron 3 of 7) 45133 ENSMUSG00000022206.7 ENSMUSG00000022206 ENSMUST00000226878 Npr3 protein_coding Interval_14800 chr10 40005490 40005828 + 0 NA intron (ENSMUSG00000038522.7, intron 3 of 3) protein_coding-intron (ENSMUSG00000038522.7, intron 3 of 3) -3896 ENSMUSG00000111608.1 ENSMUSG00000111608 ENSMUST00000214611 Gm48839 processed_pseudogene Interval_161158 chr8 117880275 117881373 + 0 NA Intergenic Intergenic 78762 ENSMUSG00000074065.4 ENSMUSG00000074065 ENSMUST00000098368 Gm10617 pseudogene Interval_107759 chr3 113574925 113575157 + 0 NA promoter-TSS (ENSMUSG00000074264.12) protein_coding-promoter-TSS (ENSMUSG00000074264.12) 31658 ENSMUSG00000074264.12 ENSMUSG00000074264 ENSMUST00000174147 Amy1 protein_coding Interval_162529 chr9 3955953 3956134 + 0 NA Intergenic Intergenic -257879 ENSMUSG00000110691.1 ENSMUSG00000110691 ENSMUST00000211927 Gm5363 processed_pseudogene Interval_100720 chr2 172006333 172007181 + 0 NA Intergenic Intergenic -2762 ENSMUSG00000087100.1 ENSMUSG00000087100 ENSMUST00000136486 Gm14641 lincRNA Interval_32811 chr11 110984943 110986708 + 0 NA intron (ENSMUSG00000051497.15, intron 1 of 1) protein_coding-intron (ENSMUSG00000051497.15, intron 1 of 1) 17792 ENSMUSG00000051497.15 ENSMUSG00000051497 ENSMUST00000178798 Kcnj16 protein_coding Interval_41417 chr12 113611045 113611627 + 0 NA exon (ENSMUSG00000094164.2, exon 2 of 2) IG_V_gene-exon (ENSMUSG00000094164.2, exon 2 of 2) 281 ENSMUSG00000094164.2 ENSMUSG00000094164 ENSMUST00000178229 Ighv2-3 IG_V_gene Interval_166950 chr9 64102495 64104148 + 0 NA Intergenic Intergenic -13851 ENSMUSG00000032401.15 ENSMUSG00000032401 ENSMUST00000132018 Lctl protein_coding Interval_161095 chr8 117423493 117423933 + 0 NA exon (ENSMUSG00000034390.16, exon 1 of 15) protein_coding-exon (ENSMUSG00000034390.16, exon 1 of 15) 297 ENSMUSG00000034390.16 ENSMUSG00000034390 ENSMUST00000212884 Cmip protein_coding Interval_163510 chr9 21786661 21788150 + 0 NA intron (ENSMUSG00000032194.9, intron 3 of 10) protein_coding-intron (ENSMUSG00000032194.9, intron 3 of 11) 11098 ENSMUSG00000032194.9 ENSMUSG00000032194 ENSMUST00000213691 Kank2 protein_coding Interval_95179 chr2 104574127 104574595 + 0 NA Intergenic Intergenic -4584 ENSMUSG00000077236.1 ENSMUSG00000077236 ENSMUST00000104048 Gm22439 snoRNA Interval_135774 chr6 47225215 47225977 + 0 NA intron (ENSMUSG00000039419.17, intron 21 of 23) protein_coding-intron (ENSMUSG00000039419.17, intron 21 of 23) 180440 ENSMUSG00000107952.1 ENSMUSG00000107952 ENSMUST00000203583 Gm6352 processed_pseudogene Interval_91470 chr2 39105098 39105591 + 0 NA intron (ENSMUSG00000035236.17, intron 10 of 17) protein_coding-intron (ENSMUSG00000035236.17, intron 9 of 17) -5934 ENSMUSG00000035236.17 ENSMUSG00000035236 ENSMUST00000142872 Scai protein_coding Interval_105587 chr3 87935660 87936947 + 0 NA intron (ENSMUSG00000048039.8, intron 2 of 3) protein_coding-intron (ENSMUSG00000048039.8, intron 2 of 3) 5989 ENSMUSG00000048039.8 ENSMUSG00000048039 ENSMUST00000055984 Isg20l2 protein_coding Interval_46167 chr13 62145605 62146334 + 0 NA intron (ENSMUSG00000074867.4, intron 1 of 3) protein_coding-intron (ENSMUSG00000074867.4, intron 1 of 3) -5201 ENSMUSG00000113690.1 ENSMUSG00000113690 ENSMUST00000221857 Gm36501 processed_pseudogene Interval_151345 chr7 121298170 121298352 + 0 NA Intergenic Intergenic -38866 ENSMUSG00000108697.1 ENSMUSG00000108697 ENSMUST00000206668 4930486N12Rik TEC Interval_82507 chr18 74762298 74762483 + 0 NA intron (ENSMUSG00000025885.18, intron 7 of 8) protein_coding-intron (ENSMUSG00000025885.18, intron 37 of 38) 16079 ENSMUSG00000088689.1 ENSMUSG00000088689 ENSMUST00000158064 Scarna17 scaRNA Interval_145640 chr7 36660661 36661150 + 0 NA Intergenic Intergenic -34533 ENSMUSG00000104330.1 ENSMUSG00000104330 ENSMUST00000192928 Gm38285 TEC Interval_56100 chr14 105732158 105733655 + 0 NA Intergenic Intergenic 51077 ENSMUSG00000060143.7 ENSMUSG00000060143 ENSMUST00000227553 Gm10076 lincRNA Interval_69432 chr16 93407774 93409139 + 0 NA intron (ENSMUSG00000099968.7, intron 1 of 2) lincRNA-intron (ENSMUSG00000099968.7, intron 1 of 2) 38736 ENSMUSG00000076457.1 ENSMUSG00000076457 ENSMUST00000103258 Mir802 miRNA Interval_107533 chr3 108340092 108340486 + 0 NA intron (ENSMUSG00000068747.14, intron 10 of 20) protein_coding-intron (ENSMUSG00000068747.14, intron 10 of 19) -21262 ENSMUSG00000078601.4 ENSMUSG00000078601 ENSMUST00000125412 Gm12525 lincRNA Interval_132763 chr5 147725012 147726643 + 0 NA exon (ENSMUSG00000029648.13, exon 1 of 12) protein_coding-exon (ENSMUSG00000029648.13, exon 1 of 12) -19689 ENSMUSG00000106845.1 ENSMUSG00000106845 ENSMUST00000202338 Gm43156 lincRNA Interval_118367 chr4 130934887 130936775 + 0 NA TTS (ENSMUSG00000028581.17) protein_coding-TTS (ENSMUSG00000028581.17) -8554 ENSMUSG00000040533.7 ENSMUSG00000040533 ENSMUST00000102576 Matn1 protein_coding Interval_127592 chr5 105669678 105670223 + 0 NA Intergenic Intergenic -61439 ENSMUSG00000046079.16 ENSMUSG00000046079 ENSMUST00000134605 Lrrc8d protein_coding Interval_16842 chr10 69112084 69112994 + 0 NA Intergenic Intergenic -14673 ENSMUSG00000112083.1 ENSMUSG00000112083 ENSMUST00000218524 Gm47107 lincRNA Interval_86237 chr19 38023513 38023779 + 0 NA intron (ENSMUSG00000048612.16, intron 2 of 9) protein_coding-intron (ENSMUSG00000048612.16, intron 2 of 52) 19753 ENSMUSG00000048612.16 ENSMUSG00000048612 ENSMUST00000226084 Myof protein_coding Interval_2620 chr1 42416030 42416924 + 0 NA Intergenic Intergenic -60540 ENSMUSG00000100180.1 ENSMUSG00000100180 ENSMUST00000190148 Gm28140 lincRNA Interval_36996 chr12 56103207 56103376 + 0 NA Intergenic Intergenic -46536 ENSMUSG00000093300.1 ENSMUSG00000093300 ENSMUST00000175559 Gm23799 rRNA Interval_41592 chr12 116625654 116626056 + 0 NA intron (ENSMUSG00000056553.14, intron 2 of 4) protein_coding-intron (ENSMUSG00000056553.14, intron 2 of 22) 28602 ENSMUSG00000101814.1 ENSMUSG00000101814 ENSMUST00000186869 Gm17807 processed_pseudogene Interval_159669 chr8 96404829 96405012 + 0 NA Intergenic Intergenic -1058 ENSMUSG00000110633.1 ENSMUSG00000110633 ENSMUST00000212119 Gm32122 lincRNA Interval_125404 chr5 66710514 66710795 + 0 NA Intergenic Intergenic -7716 ENSMUSG00000107284.1 ENSMUSG00000107284 ENSMUST00000202958 Gm43280 TEC Interval_16773 chr10 68074397 68075036 + 0 NA Intergenic Intergenic -48090 ENSMUSG00000086838.1 ENSMUSG00000086838 ENSMUST00000143555 Gm16212 antisense Interval_21706 chr11 3827777 3828373 + 0 NA intron (ENSMUSG00000020435.17, intron 1 of 2) protein_coding-intron (ENSMUSG00000020435.17, intron 1 of 13) 39183 ENSMUSG00000088352.1 ENSMUSG00000088352 ENSMUST00000157727 Gm24013 snoRNA Interval_143999 chr7 18872672 18873771 + 0 NA intron (ENSMUSG00000030413.7, intron 2 of 3) protein_coding-intron (ENSMUSG00000030413.7, intron 2 of 3) 1851 ENSMUSG00000030413.7 ENSMUSG00000030413 ENSMUST00000206481 Pglyrp1 protein_coding Interval_68865 chr16 87689078 87689772 + 0 NA Intergenic Intergenic -9579 ENSMUSG00000025612.5 ENSMUSG00000025612 ENSMUST00000156958 Bach1 protein_coding Interval_129639 chr5 121477443 121477974 + 0 NA intron (ENSMUSG00000029452.18, intron 5 of 10) protein_coding-intron (ENSMUSG00000029452.18, intron 4 of 9) -5320 ENSMUSG00000082760.2 ENSMUSG00000082760 ENSMUST00000122095 Gm15546 processed_pseudogene Interval_20664 chr10 120112564 120115006 + 0 NA promoter-TSS (ENSMUSG00000020228.11) protein_coding-promoter-TSS (ENSMUSG00000020228.11) -920 ENSMUSG00000020228.11 ENSMUSG00000020228 ENSMUST00000154501 Helb protein_coding Interval_61073 chr15 79073415 79076551 + 0 NA promoter-TSS (ENSMUSG00000033047.5) protein_coding-promoter-TSS (ENSMUSG00000033047.5) -8066 ENSMUSG00000033047.5 ENSMUSG00000033047 ENSMUST00000230032 Eif3l protein_coding Interval_100894 chr2 173204607 173206147 + 0 NA Intergenic Intergenic 13520 ENSMUSG00000027514.14 ENSMUSG00000027514 ENSMUST00000109116 Zbp1 protein_coding Interval_61360 chr15 81060927 81061202 + 0 NA intron (ENSMUSG00000042292.18, intron 2 of 13) protein_coding-intron (ENSMUSG00000042292.18, intron 1 of 12) 5948 ENSMUSG00000042292.18 ENSMUSG00000042292 ENSMUST00000147921 Mrtfa protein_coding Interval_134198 chr6 22708513 22709535 + 0 NA Intergenic Intergenic 5588 ENSMUSG00000098187.1 ENSMUSG00000098187 ENSMUST00000181978 Gm8927 processed_pseudogene Interval_174198 chrX 139400071 139400495 + 0 NA Intergenic Intergenic 41815 ENSMUSG00000084205.1 ENSMUSG00000084205 ENSMUST00000122380 Gm8061 processed_pseudogene Interval_43198 chr13 25110285 25111087 + 0 NA intron (ENSMUSG00000035910.15, intron 5 of 5) protein_coding-intron (ENSMUSG00000035910.15, intron 6 of 7) 20378 ENSMUSG00000082667.1 ENSMUSG00000082667 ENSMUST00000118813 Gm11348 processed_pseudogene Interval_156732 chr8 57707164 57707354 + 0 NA intron (ENSMUSG00000110162.1, intron 2 of 2) lincRNA-intron (ENSMUSG00000110162.1, intron 2 of 2) 7485 ENSMUSG00000110162.1 ENSMUSG00000110162 ENSMUST00000209274 Gm45356 lincRNA Interval_52123 chr14 36883086 36883622 + 0 NA intron (ENSMUSG00000058690.14, intron 2 of 2) protein_coding-intron (ENSMUSG00000058690.14, intron 9 of 9) 25827 ENSMUSG00000058690.14 ENSMUSG00000058690 ENSMUST00000182635 Ccser2 protein_coding Interval_55971 chr14 103498524 103498763 + 0 NA intron (ENSMUSG00000115762.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000115762.1, intron 1 of 2) -14699 ENSMUSG00000022123.9 ENSMUSG00000022123 ENSMUST00000095576 Scel protein_coding Interval_165442 chr9 47982844 47983390 + 0 NA Intergenic Intergenic 17681 ENSMUSG00000111437.1 ENSMUSG00000111437 ENSMUST00000214513 Gm47236 processed_pseudogene Interval_114039 chr4 62680430 62681070 + 0 NA intron (ENSMUSG00000059810.18, intron 1 of 1) protein_coding-intron (ENSMUSG00000059810.18, intron 10 of 15) -25231 ENSMUSG00000085223.1 ENSMUSG00000085223 ENSMUST00000150203 Gm11210 lincRNA Interval_155621 chr8 35234502 35234977 + 0 NA intron (ENSMUSG00000109688.1, intron 2 of 3) lincRNA-intron (ENSMUSG00000109688.1, intron 2 of 3) 10740 ENSMUSG00000109688.1 ENSMUSG00000109688 ENSMUST00000211189 Gm34597 lincRNA Interval_3194 chr1 54636090 54636425 + 0 NA Intergenic Intergenic 12356 ENSMUSG00000052331.14 ENSMUSG00000052331 ENSMUST00000177679 Ankrd44 protein_coding Interval_113406 chr4 54632571 54633542 + 0 NA Intergenic Intergenic 13224 ENSMUSG00000099421.1 ENSMUSG00000099421 ENSMUST00000190821 Gm29067 lincRNA Interval_154867 chr8 24502866 24503076 + 0 NA Intergenic Intergenic -3459 ENSMUSG00000109237.1 ENSMUSG00000109237 ENSMUST00000208727 9130214F15Rik TEC Interval_110590 chr4 4299629 4300295 + 0 NA Intergenic Intergenic -161143 ENSMUSG00000045573.9 ENSMUSG00000045573 ENSMUST00000133567 Penk protein_coding Interval_17360 chr10 76067489 76068594 + 0 NA intron (ENSMUSG00000020226.9, intron 11 of 14) protein_coding-intron (ENSMUSG00000020226.9, intron 11 of 14) -10576 ENSMUSG00000086798.1 ENSMUSG00000086798 ENSMUST00000124320 Gm16222 antisense Interval_4355 chr1 72938485 72938671 + 0 NA Intergenic Intergenic -64303 ENSMUSG00000026185.8 ENSMUSG00000026185 ENSMUST00000137339 Igfbp5 protein_coding Interval_27259 chr11 65012242 65012632 + 0 NA intron (ENSMUSG00000033389.16, intron 16 of 20) protein_coding-intron (ENSMUSG00000033389.16, intron 16 of 20) 25104 ENSMUSG00000083935.1 ENSMUSG00000083935 ENSMUST00000119723 Gm12294 processed_pseudogene Interval_45759 chr13 57766872 57767369 + 0 NA intron (ENSMUSG00000056222.15, intron 2 of 10) protein_coding-intron (ENSMUSG00000056222.15, intron 1 of 9) 141212 ENSMUSG00000056222.15 ENSMUSG00000056222 ENSMUST00000185905 Spock1 protein_coding Interval_80462 chr18 42385660 42386491 + 0 NA Intergenic Intergenic -9000 ENSMUSG00000024497.4 ENSMUSG00000024497 ENSMUST00000237247 Pou4f3 protein_coding Interval_36135 chr12 36207650 36207926 + 0 NA TTS (ENSMUSG00000020545.14) protein_coding-TTS (ENSMUSG00000020545.14) 10430 ENSMUSG00000020545.14 ENSMUSG00000020545 ENSMUST00000222145 Lrrc72 protein_coding Interval_9584 chr1 159783623 159784124 + 0 NA intron (ENSMUSG00000015829.13, intron 1 of 1) protein_coding-intron (ENSMUSG00000015829.13, intron 1 of 21) 102211 ENSMUSG00000073528.7 ENSMUSG00000073528 ENSMUST00000194909 Gm10530 processed_transcript Interval_66138 chr16 31902034 31902406 + 0 NA Intergenic Intergenic -22769 ENSMUSG00000083890.1 ENSMUSG00000083890 ENSMUST00000120250 Gm15703 processed_pseudogene Interval_89857 chr2 26040586 26041887 + 0 NA Intergenic Intergenic -17774 ENSMUSG00000087515.1 ENSMUSG00000087515 ENSMUST00000137349 Gm13554 antisense Interval_173562 chrX 99442572 99444091 + 0 NA intron (ENSMUSG00000073051.4, intron 1 of 6) lincRNA-intron (ENSMUSG00000073051.4, intron 1 of 6) 466 ENSMUSG00000073051.4 ENSMUSG00000073051 ENSMUST00000156494 Gm14812 lincRNA Interval_98467 chr2 152620775 152621238 + 0 NA Intergenic Intergenic 2047 ENSMUSG00000074678.1 ENSMUSG00000074678 ENSMUST00000099203 Defb25 protein_coding Interval_164025 chr9 31009481 31013270 + 0 NA intron (ENSMUSG00000111673.1, intron 1 of 2) antisense-intron (ENSMUSG00000111673.1, intron 1 of 2) -1312 ENSMUSG00000111673.1 ENSMUSG00000111673 ENSMUST00000216803 Gm29724 antisense Interval_70151 chr17 5840846 5842141 + 0 NA exon (ENSMUSG00000002365.10, exon 1 of 18) protein_coding-exon (ENSMUSG00000002365.10, exon 1 of 18) 141 ENSMUSG00000002365.10 ENSMUSG00000002365 ENSMUST00000231803 Snx9 protein_coding Interval_136943 chr6 65000938 65003492 + 0 NA Intergenic Intergenic 11268 ENSMUSG00000086176.4 ENSMUSG00000086176 ENSMUST00000137642 Gm15534 processed_pseudogene Interval_159854 chr8 104373568 104374330 + 0 NA intron (ENSMUSG00000096188.1, intron 1 of 3) protein_coding-intron (ENSMUSG00000096188.1, intron 1 of 3) -10281 ENSMUSG00000110486.1 ENSMUSG00000110486 ENSMUST00000212110 Gm45877 sense_intronic Interval_16586 chr10 64608702 64609056 + 0 NA intron (ENSMUSG00000060843.11, intron 12 of 17) protein_coding-intron (ENSMUSG00000060843.11, intron 11 of 16) -304135 ENSMUSG00000089003.1 ENSMUSG00000089003 ENSMUST00000158378 Gm23854 snRNA Interval_113774 chr4 58518564 58518796 + 0 NA intron (ENSMUSG00000038668.14, intron 1 of 3) protein_coding-intron (ENSMUSG00000038668.14, intron 1 of 3) 29721 ENSMUSG00000038668.14 ENSMUSG00000038668 ENSMUST00000145361 Lpar1 protein_coding Interval_138209 chr6 86318000 86319067 + 0 NA Intergenic Intergenic -15498 ENSMUSG00000072940.5 ENSMUSG00000072940 ENSMUST00000119024 Gm10443 processed_pseudogene Interval_131955 chr5 141074876 141075347 + 0 NA Intergenic Intergenic -5320 ENSMUSG00000093344.1 ENSMUSG00000093344 ENSMUST00000175603 Gm26113 miRNA Interval_22786 chr11 15516450 15517123 + 0 NA Intergenic Intergenic 34480 ENSMUSG00000083292.1 ENSMUSG00000083292 ENSMUST00000122400 Gm12010 processed_pseudogene Interval_62653 chr15 95971489 95971773 + 0 NA intron (ENSMUSG00000064210.7, intron 20 of 20) protein_coding-intron (ENSMUSG00000064210.7, intron 19 of 19) 22498 ENSMUSG00000115049.1 ENSMUSG00000115049 ENSMUST00000227616 Gm49172 processed_transcript Interval_21749 chr11 4103329 4103915 + 0 NA intron (ENSMUSG00000003585.13, intron 3 of 3) protein_coding-intron (ENSMUSG00000003585.13, intron 10 of 11) -4133 ENSMUSG00000082364.1 ENSMUSG00000082364 ENSMUST00000119801 Gm11955 processed_pseudogene Interval_15130 chr10 42734361 42735054 + 0 NA Intergenic Intergenic 23953 ENSMUSG00000086428.1 ENSMUSG00000086428 ENSMUST00000129933 Gm15199 antisense Interval_127583 chr5 105579503 105579749 + 0 NA promoter-TSS (ENSMUSG00000085771.1) sense_intronic-promoter-TSS (ENSMUSG00000085771.1) -814 ENSMUSG00000085771.1 ENSMUSG00000085771 ENSMUST00000150195 C230066G23Rik sense_intronic Interval_107907 chr3 116723004 116723998 + 0 NA Intergenic Intergenic -11289 ENSMUSG00000027957.13 ENSMUSG00000027957 ENSMUST00000169530 Slc35a3 protein_coding Interval_66644 chr16 35829740 35830877 + 0 NA Intergenic Intergenic 1953 ENSMUSG00000116549.1 ENSMUSG00000116549 ENSMUST00000231601 Gm49728 processed_pseudogene Interval_9743 chr1 161689082 161689431 + 0 NA Intergenic Intergenic -24449 ENSMUSG00000102860.1 ENSMUSG00000102860 ENSMUST00000194337 Gm37638 TEC Interval_138383 chr6 87778829 87779667 + 0 NA exon (ENSMUSG00000030054.4, exon 2 of 2) protein_coding-exon (ENSMUSG00000030054.4, exon 2 of 2) 1176 ENSMUSG00000030054.4 ENSMUSG00000030054 ENSMUST00000032133 Gp9 protein_coding Interval_72001 chr17 27519995 27521219 + 0 NA intron (ENSMUSG00000063239.17, intron 1 of 8) protein_coding-intron (ENSMUSG00000063239.17, intron 1 of 8) -1966 ENSMUSG00000082177.2 ENSMUSG00000082177 ENSMUST00000120515 Gm16005 processed_pseudogene Interval_68116 chr16 65312365 65313097 + 0 NA Intergenic Intergenic -26387 ENSMUSG00000116687.1 ENSMUSG00000116687 ENSMUST00000232590 Gm49629 processed_pseudogene Interval_113095 chr4 48124443 48125586 + 0 NA promoter-TSS (ENSMUSG00000061455.13) protein_coding-promoter-TSS (ENSMUSG00000061455.13) 91 ENSMUSG00000061455.13 ENSMUSG00000061455 ENSMUST00000064765 Stx17 protein_coding Interval_28769 chr11 78203823 78204635 + 0 NA exon (ENSMUSG00000044122.15, exon 3 of 4) protein_coding-intron (ENSMUSG00000044122.15, intron 3 of 3) 10164 ENSMUSG00000044122.15 ENSMUSG00000044122 ENSMUST00000124772 Proca1 protein_coding Interval_164782 chr9 41804916 41805199 + 0 NA promoter-TSS (ENSMUSG00000110981.1) processed_transcript-promoter-TSS (ENSMUSG00000110981.1) -355 ENSMUSG00000110981.1 ENSMUSG00000110981 ENSMUST00000213355 Gm35940 processed_transcript Interval_98794 chr2 155006077 155006653 + 0 NA intron (ENSMUSG00000027596.10, intron 3 of 4) protein_coding-intron (ENSMUSG00000027596.10, intron 1 of 3) -7107 ENSMUSG00000027596.10 ENSMUSG00000027596 ENSMUST00000148300 a protein_coding Interval_77954 chr18 6085265 6085588 + 0 NA intron (ENSMUSG00000041225.16, intron 1 of 4) protein_coding-intron (ENSMUSG00000041225.16, intron 3 of 18) 26554 ENSMUSG00000041225.16 ENSMUSG00000041225 ENSMUST00000182572 Arhgap12 protein_coding Interval_41659 chr12 117469916 117470253 + 0 NA Intergenic Intergenic -104258 ENSMUSG00000089482.1 ENSMUSG00000089482 ENSMUST00000158857 Gm24741 rRNA Interval_28080 chr11 72689538 72690649 + 0 NA promoter-TSS (ENSMUSG00000020790.14) protein_coding-promoter-TSS (ENSMUSG00000020790.14) 87 ENSMUSG00000020790.14 ENSMUSG00000020790 ENSMUST00000132889 Ankfy1 protein_coding Interval_156967 chr8 63047494 63048055 + 0 NA intron (ENSMUSG00000054162.15, intron 2 of 10) protein_coding-intron (ENSMUSG00000054162.15, intron 1 of 10) 26908 ENSMUSG00000110308.1 ENSMUSG00000110308 ENSMUST00000211588 Gm45516 TEC Interval_81411 chr18 60600058 60600583 + 0 NA exon (ENSMUSG00000043079.17, exon 2 of 2) protein_coding-exon (ENSMUSG00000043079.17, exon 2 of 2) -8532 ENSMUSG00000049173.8 ENSMUSG00000049173 ENSMUST00000056533 Myoz3 protein_coding Interval_174173 chrX 137127688 137128141 + 0 NA promoter-TSS (ENSMUSG00000082696.1) processed_pseudogene-promoter-TSS (ENSMUSG00000082696.1) -196 ENSMUSG00000082696.1 ENSMUSG00000082696 ENSMUST00000118561 Gm15040 processed_pseudogene Interval_70515 chr17 11402919 11403264 + 0 NA intron (ENSMUSG00000023826.16, intron 3 of 10) protein_coding-intron (ENSMUSG00000023826.16, intron 4 of 6) -116326 ENSMUSG00000104527.1 ENSMUSG00000104527 ENSMUST00000195853 Gm37332 TEC Interval_46413 chr13 64917305 64917681 + 0 NA promoter-TSS (ENSMUSG00000056223.8) protein_coding-promoter-TSS (ENSMUSG00000056223.8) 39 ENSMUSG00000056223.8 ENSMUSG00000056223 ENSMUST00000221202 Spata31 protein_coding Interval_45104 chr13 52222117 52224089 + 0 NA Intergenic Intergenic 42692 ENSMUSG00000113399.1 ENSMUSG00000113399 ENSMUST00000222876 Gm48199 lincRNA Interval_11115 chr1 179466942 179467146 + 0 NA intron (ENSMUSG00000055067.15, intron 1 of 11) protein_coding-intron (ENSMUSG00000055067.15, intron 1 of 5) 50961 ENSMUSG00000055067.15 ENSMUSG00000055067 ENSMUST00000194237 Smyd3 protein_coding Interval_170184 chr9 106039027 106039573 + 0 NA intron (ENSMUSG00000032572.9, intron 19 of 37) protein_coding-intron (ENSMUSG00000032572.9, intron 19 of 37) 25770 ENSMUSG00000111796.1 ENSMUSG00000111796 ENSMUST00000213434 Gm47575 antisense Interval_155640 chr8 35479249 35479677 + 0 NA exon (ENSMUSG00000031527.7, exon 1 of 1) protein_coding-exon (ENSMUSG00000031527.7, exon 1 of 1) 1945 ENSMUSG00000031527.7 ENSMUSG00000031527 ENSMUST00000210483 Eri1 protein_coding Interval_90700 chr2 32006308 32006547 + 0 NA intron (ENSMUSG00000001855.15, intron 17 of 35) protein_coding-intron (ENSMUSG00000001855.15, intron 17 of 35) 10917 ENSMUSG00000086192.1 ENSMUSG00000086192 ENSMUST00000141023 Gm13609 antisense Interval_121165 chr4 153703130 153704097 + 0 NA Intergenic Intergenic -172771 ENSMUSG00000077519.1 ENSMUSG00000077519 ENSMUST00000104331 Gm25880 snoRNA Interval_74626 chr17 53914955 53915207 + 0 NA Intergenic Intergenic -2762 ENSMUSG00000105921.1 ENSMUSG00000105921 ENSMUST00000196140 Mark4-ps processed_pseudogene Interval_27726 chr11 69694898 69696172 + 0 NA promoter-TSS (ENSMUSG00000097328.7) protein_coding-promoter-TSS (ENSMUSG00000097328.7) 314 ENSMUSG00000097328.7 ENSMUSG00000097328 ENSMUST00000181261 Tnfsf12 protein_coding Interval_77749 chr17 94872260 94873151 + 0 NA intron (ENSMUSG00000095193.2, intron 1 of 3) lincRNA-intron (ENSMUSG00000095193.2, intron 1 of 2) -2717 ENSMUSG00000065658.1 ENSMUSG00000065658 ENSMUST00000083724 Gm23102 snRNA Interval_54483 chr14 70164499 70165670 + 0 NA intron (ENSMUSG00000022090.10, intron 9 of 9) protein_coding-intron (ENSMUSG00000022090.10, intron 9 of 9) -5582 ENSMUSG00000044551.13 ENSMUSG00000044551 ENSMUST00000140152 9930012K11Rik protein_coding Interval_47140 chr13 76203246 76203925 + 0 NA intron (ENSMUSG00000109228.2, intron 10 of 10) protein_coding-intron (ENSMUSG00000109228.2, intron 10 of 10) 4594 ENSMUSG00000114664.1 ENSMUSG00000114664 ENSMUST00000225364 Gm48639 TEC Interval_165623 chr9 50475909 50476224 + 0 NA Intergenic Intergenic -18461 ENSMUSG00000032068.14 ENSMUSG00000032068 ENSMUST00000188047 Plet1 protein_coding Interval_39199 chr12 85776850 85778062 + 0 NA intron (ENSMUSG00000034258.4, intron 1 of 6) protein_coding-intron (ENSMUSG00000034258.4, intron 1 of 9) 2626 ENSMUSG00000034258.4 ENSMUSG00000034258 ENSMUST00000221585 Flvcr2 protein_coding Interval_94865 chr2 98196071 98196577 + 0 NA Intergenic Intergenic -95079 ENSMUSG00000080802.1 ENSMUSG00000080802 ENSMUST00000119552 Gm13804 processed_pseudogene Interval_153637 chr8 4172613 4173400 + 0 NA intron (ENSMUSG00000086805.9, intron 4 of 9) protein_coding-intron (ENSMUSG00000011832.16, intron 1 of 17) 6439 ENSMUSG00000011832.16 ENSMUSG00000011832 ENSMUST00000176645 Evi5l protein_coding Interval_20574 chr10 119135088 119135768 + 0 NA exon (ENSMUSG00000112161.1, exon 6 of 6) lincRNA-exon (ENSMUSG00000112161.1, exon 6 of 6) 23804 ENSMUSG00000112609.1 ENSMUSG00000112609 ENSMUST00000220151 Gm47480 lincRNA Interval_144462 chr7 25297203 25298357 + 0 NA promoter-TSS (ENSMUSG00000005447.12) protein_coding-promoter-TSS (ENSMUSG00000005447.12) 157 ENSMUSG00000005447.12 ENSMUSG00000005447 ENSMUST00000149634 Pafah1b3 protein_coding Interval_84565 chr19 12766366 12766586 + 0 NA promoter-TSS (ENSMUSG00000079415.2) protein_coding-promoter-TSS (ENSMUSG00000079415.2) -844 ENSMUSG00000079415.2 ENSMUSG00000079415 ENSMUST00000112933 Cntf protein_coding Interval_146863 chr7 53805456 53806044 + 0 NA Intergenic Intergenic 86139 ENSMUSG00000099176.1 ENSMUSG00000099176 ENSMUST00000184140 Mir6238 miRNA Interval_70436 chr17 10221263 10221715 + 0 NA intron (ENSMUSG00000062078.15, intron 4 of 6) protein_coding-intron (ENSMUSG00000062078.15, intron 4 of 6) 97872 ENSMUSG00000062078.15 ENSMUSG00000062078 ENSMUST00000233684 Qk protein_coding Interval_138365 chr6 87636047 87636730 + 0 NA intron (ENSMUSG00000030051.10, intron 9 of 9) protein_coding-intron (ENSMUSG00000030051.10, intron 9 of 10) -21366 ENSMUSG00000107593.1 ENSMUSG00000107593 ENSMUST00000204112 Gm44097 antisense Interval_13689 chr10 21063204 21063417 + 0 NA intron (ENSMUSG00000019986.17, intron 4 of 6) protein_coding-intron (ENSMUSG00000019986.17, intron 21 of 23) -6535 ENSMUSG00000019986.17 ENSMUSG00000019986 ENSMUST00000215543 Ahi1 protein_coding Interval_43413 chr13 30336196 30337401 + 0 NA intron (ENSMUSG00000049115.15, intron 1 of 3) protein_coding-intron (ENSMUSG00000049115.15, intron 1 of 2) 354 ENSMUSG00000049115.15 ENSMUSG00000049115 ENSMUST00000221743 Agtr1a protein_coding Interval_51064 chr14 21903166 21903418 + 0 NA Intergenic Intergenic -13526 ENSMUSG00000114352.1 ENSMUSG00000114352 ENSMUST00000224374 4931407E12Rik lincRNA Interval_40629 chr12 106102312 106102553 + 0 NA Intergenic Intergenic -3461 ENSMUSG00000113390.1 ENSMUSG00000113390 ENSMUST00000221493 Gm32635 lincRNA Interval_75767 chr17 71182715 71184562 + 0 NA promoter-TSS (ENSMUSG00000024052.17) protein_coding-promoter-TSS (ENSMUSG00000024052.17) 82 ENSMUSG00000024052.17 ENSMUSG00000024052 ENSMUST00000125665 Lpin2 protein_coding Interval_134049 chr6 18087350 18088908 + 0 NA intron (ENSMUSG00000010796.11, intron 4 of 4) protein_coding-intron (ENSMUSG00000010796.11, intron 4 of 12) -13022 ENSMUSG00000010796.11 ENSMUSG00000010796 ENSMUST00000131614 Asz1 protein_coding Interval_135339 chr6 38456669 38456911 + 0 NA intron (ENSMUSG00000038538.17, intron 2 of 14) protein_coding-intron (ENSMUSG00000038538.17, intron 3 of 16) 16257 ENSMUSG00000038538.17 ENSMUSG00000038538 ENSMUST00000159447 Ubn2 protein_coding Interval_58280 chr15 31594621 31594810 + 0 NA promoter-TSS (ENSMUSG00000022234.15) protein_coding-promoter-TSS (ENSMUSG00000022234.15) 6824 ENSMUSG00000022234.15 ENSMUSG00000022234 ENSMUST00000159121 Cct5 protein_coding Interval_56809 chr14 122222741 122224196 + 0 NA intron (ENSMUSG00000025545.10, intron 1 of 7) protein_coding-intron (ENSMUSG00000025545.10, intron 1 of 7) 10186 ENSMUSG00000100585.1 ENSMUSG00000100585 ENSMUST00000187423 1700108J01Rik antisense Interval_86691 chr19 42654311 42655711 + 0 NA Intergenic Intergenic 44891 ENSMUSG00000077768.1 ENSMUSG00000077768 ENSMUST00000104580 Gm25216 snoRNA Interval_119128 chr4 135738499 135739249 + 0 NA intron (ENSMUSG00000037157.8, intron 4 of 6) protein_coding-intron (ENSMUSG00000037157.8, intron 4 of 6) 10702 ENSMUSG00000037157.8 ENSMUSG00000037157 ENSMUST00000102546 Il22ra1 protein_coding Interval_171725 chr9 120519087 120520170 + 0 NA Intergenic Intergenic -2185 ENSMUSG00000111816.1 ENSMUSG00000111816 ENSMUST00000214719 Gm7229 unprocessed_pseudogene Interval_164368 chr9 36296103 36296461 + 0 NA Intergenic Intergenic -37959 ENSMUSG00000066767.6 ENSMUSG00000066767 ENSMUST00000086108 Gm3867 transcribed_processed_pseudogene Interval_22194 chr11 7062878 7065391 + 0 NA exon (ENSMUSG00000020431.5, exon 1 of 20) protein_coding-exon (ENSMUSG00000020431.5, exon 1 of 20) -95748 ENSMUSG00000020431.5 ENSMUSG00000020431 ENSMUST00000135398 Adcy1 protein_coding Interval_95710 chr2 114570676 114571351 + 0 NA intron (ENSMUSG00000057147.13, intron 3 of 6) protein_coding-intron (ENSMUSG00000057147.13, intron 3 of 7) -83412 ENSMUSG00000084785.1 ENSMUSG00000084785 ENSMUST00000153726 Gm13972 processed_transcript Interval_108767 chr3 131143436 131144569 + 0 NA intron (ENSMUSG00000027985.14, intron 2 of 2) protein_coding-intron (ENSMUSG00000027985.14, intron 3 of 11) 7217 ENSMUSG00000104612.1 ENSMUSG00000104612 ENSMUST00000200349 Gm42449 TEC Interval_147350 chr7 66031617 66031891 + 0 NA exon (ENSMUSG00000030513.14, exon 16 of 22) protein_coding-exon (ENSMUSG00000030513.14, exon 16 of 22) -11848 ENSMUSG00000108793.1 ENSMUSG00000108793 ENSMUST00000206065 Gm45213 protein_coding Interval_69790 chr16 96353453 96354664 + 0 NA Intergenic Intergenic -7736 ENSMUSG00000117081.1 ENSMUSG00000117081 ENSMUST00000113795 Gm49948 protein_coding Interval_149288 chr7 96959063 96959726 + 0 NA intron (ENSMUSG00000018995.12, intron 3 of 5) protein_coding-intron (ENSMUSG00000018995.12, intron 3 of 13) -9254 ENSMUSG00000085560.2 ENSMUSG00000085560 ENSMUST00000137923 C230038L03Rik processed_transcript Interval_159593 chr8 95696362 95697718 + 0 NA intron (ENSMUSG00000036564.17, intron 1 of 16) protein_coding-intron (ENSMUSG00000036564.17, intron 1 of 16) -6030 ENSMUSG00000036564.17 ENSMUSG00000036564 ENSMUST00000161314 Ndrg4 protein_coding Interval_15982 chr10 59922376 59922890 + 0 NA Intergenic Intergenic 29201 ENSMUSG00000020108.4 ENSMUSG00000020108 ENSMUST00000020308 Ddit4 protein_coding Interval_76070 chr17 74699402 74699890 + 0 NA intron (ENSMUSG00000024073.16, intron 17 of 17) protein_coding-intron (ENSMUSG00000024073.16, intron 72 of 72) 63924 ENSMUSG00000024073.16 ENSMUSG00000024073 ENSMUST00000182157 Birc6 protein_coding Interval_62505 chr15 93570670 93571414 + 0 NA intron (ENSMUSG00000036158.12, intron 1 of 7) protein_coding-intron (ENSMUSG00000036158.12, intron 1 of 7) -51519 ENSMUSG00000036158.12 ENSMUSG00000036158 ENSMUST00000048982 Prickle1 protein_coding Interval_47591 chr13 89661469 89662677 + 0 NA promoter-TSS (ENSMUSG00000089972.3) processed_pseudogene-promoter-TSS (ENSMUSG00000089972.3) -697 ENSMUSG00000089972.3 ENSMUSG00000089972 ENSMUST00000162402 Gm16318 processed_pseudogene Interval_101092 chr2 177892949 177895907 + 0 NA Intergenic Intergenic 1790 ENSMUSG00000082901.1 ENSMUSG00000082901 ENSMUST00000122418 Rps8-ps5 processed_pseudogene Interval_101157 chr2 178619786 178620418 + 0 NA Intergenic Intergenic 159472 ENSMUSG00000039155.15 ENSMUSG00000039155 ENSMUST00000176869 Cdh26 protein_coding Interval_29896 chr11 87577665 87579431 + 0 NA promoter-TSS (ENSMUSG00000020486.19) protein_coding-promoter-TSS (ENSMUSG00000020486.19) 11895 ENSMUSG00000020486.19 ENSMUSG00000020486 ENSMUST00000143950 Septin4 protein_coding Interval_56672 chr14 121295731 121296155 + 0 NA intron (ENSMUSG00000063410.8, intron 4 of 4) protein_coding-intron (ENSMUSG00000063410.8, intron 6 of 10) 47237 ENSMUSG00000085133.2 ENSMUSG00000085133 ENSMUST00000130256 B930095G15Rik sense_intronic Interval_163986 chr9 30426723 30427480 + 0 NA promoter-TSS (ENSMUSG00000031993.7) protein_coding-promoter-TSS (ENSMUSG00000031993.7) -125 ENSMUSG00000111109.1 ENSMUSG00000111109 ENSMUST00000217174 Gm30933 bidirectional_promoter_lncRNA Interval_18850 chr10 91279326 91280489 + 0 NA Intergenic Intergenic -20563 ENSMUSG00000110847.1 ENSMUSG00000110847 ENSMUST00000215985 Gm18705 processed_pseudogene Interval_55810 chr14 100389023 100390186 + 0 NA Intergenic Intergenic -28879 ENSMUSG00000094585.1 ENSMUSG00000094585 ENSMUST00000104165 Gm26367 snoRNA Interval_169392 chr9 96888445 96890084 + 0 NA exon (ENSMUSG00000043587.15, exon 1 of 1) protein_coding-exon (ENSMUSG00000043587.15, exon 1 of 1) 169 ENSMUSG00000043587.15 ENSMUSG00000043587 ENSMUST00000185561 Pxylp1 protein_coding Interval_138746 chr6 91599151 91599795 + 0 NA intron (ENSMUSG00000108308.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000108308.1, intron 1 of 1) 241 ENSMUSG00000108308.1 ENSMUSG00000108308 ENSMUST00000205533 Gm45218 lincRNA Interval_47789 chr13 92794182 92795122 + 0 NA exon (ENSMUSG00000021702.7, exon 1 of 22) protein_coding-exon (ENSMUSG00000021702.7, exon 1 of 22) -19678 ENSMUSG00000021702.7 ENSMUSG00000021702 ENSMUST00000168299 Thbs4 protein_coding Interval_43836 chr13 37482668 37485058 + 0 NA TTS (ENSMUSG00000114573.1) lincRNA-TTS (ENSMUSG00000114573.1) 1478 ENSMUSG00000114573.1 ENSMUSG00000114573 ENSMUST00000223569 Gm47732 lincRNA Interval_164952 chr9 43337589 43338229 + 0 NA Intergenic Intergenic 18950 ENSMUSG00000032013.6 ENSMUSG00000032013 ENSMUST00000217067 Trim29 protein_coding Interval_162371 chr8 127499993 127500432 + 0 NA intron (ENSMUSG00000025812.18, intron 22 of 24) protein_coding-intron (ENSMUSG00000025812.18, intron 21 of 23) -61223 ENSMUSG00000090074.1 ENSMUSG00000090074 ENSMUST00000161478 Gm6921 processed_pseudogene Interval_117274 chr4 121196527 121197269 + 0 NA intron (ENSMUSG00000049878.13, intron 1 of 7) protein_coding-intron (ENSMUSG00000049878.13, intron 1 of 7) 18186 ENSMUSG00000049878.13 ENSMUSG00000049878 ENSMUST00000222814 Rlf protein_coding Interval_114134 chr4 63982473 63982673 + 0 NA intron (ENSMUSG00000073821.11, intron 1 of 4) protein_coding-intron (ENSMUSG00000028364.15, intron 14 of 24) 64442 ENSMUSG00000028364.15 ENSMUSG00000028364 ENSMUST00000107371 Tnc protein_coding Interval_128669 chr5 114618038 114619308 + 0 NA Intergenic Intergenic 26226 ENSMUSG00000014158.12 ENSMUSG00000014158 ENSMUST00000212469 Trpv4 protein_coding Interval_124515 chr5 49975377 49976282 + 0 NA intron (ENSMUSG00000029090.12, intron 14 of 18) protein_coding-intron (ENSMUSG00000029090.12, intron 14 of 18) -31271 ENSMUSG00000104634.1 ENSMUSG00000104634 ENSMUST00000198627 Gm42461 TEC Interval_33212 chr11 115249716 115251179 + 0 NA exon (ENSMUSG00000020734.13, exon 13 of 13) protein_coding-exon (ENSMUSG00000020734.13, exon 13 of 13) -2831 ENSMUSG00000089544.1 ENSMUSG00000089544 ENSMUST00000158919 Gm25837 miRNA Interval_94191 chr2 84995731 84996180 + 0 NA Intergenic Intergenic 7740 ENSMUSG00000027072.13 ENSMUSG00000027072 ENSMUST00000028466 Prg3 protein_coding Interval_65577 chr16 23506141 23506591 + 0 NA intron (ENSMUSG00000022887.9, intron 2 of 8) protein_coding-intron (ENSMUSG00000022887.9, intron 2 of 15) -7904 ENSMUSG00000116481.1 ENSMUSG00000116481 ENSMUST00000229821 Gm49514 processed_pseudogene Interval_141308 chr6 127093959 127095254 + 0 NA intron (ENSMUSG00000038028.9, intron 1 of 4) protein_coding-intron (ENSMUSG00000038028.9, intron 2 of 5) -5691 ENSMUSG00000097525.2 ENSMUSG00000097525 ENSMUST00000180653 Platr31 antisense Interval_75244 chr17 65291239 65291445 + 0 NA intron (ENSMUSG00000045036.15, intron 11 of 12) protein_coding-intron (ENSMUSG00000045036.15, intron 14 of 15) 104948 ENSMUSG00000117012.1 ENSMUSG00000117012 ENSMUST00000232744 Gm18992 processed_pseudogene Interval_139342 chr6 99130779 99131978 + 0 NA intron (ENSMUSG00000030067.17, intron 1 of 15) protein_coding-intron (ENSMUSG00000030067.17, intron 1 of 15) -55321 ENSMUSG00000105902.1 ENSMUSG00000105902 ENSMUST00000200105 Gm49348 miRNA Interval_33328 chr11 115963059 115963574 + 0 NA intron (ENSMUSG00000020755.9, intron 9 of 10) protein_coding-intron (ENSMUSG00000020755.9, intron 8 of 9) -11211 ENSMUSG00000087064.1 ENSMUSG00000087064 ENSMUST00000132264 Sap30bpos antisense Interval_152089 chr7 129070691 129071324 + 0 NA Intergenic Intergenic -15931 ENSMUSG00000108785.1 ENSMUSG00000108785 ENSMUST00000206489 Gm4259 processed_pseudogene Interval_697 chr1 9995583 9995824 + 0 NA intron (ENSMUSG00000025916.10, intron 4 of 6) protein_coding-intron (ENSMUSG00000025916.10, intron 4 of 8) 13316 ENSMUSG00000087199.1 ENSMUSG00000087199 ENSMUST00000134692 Gm15818 antisense Interval_63786 chr15 103400776 103402072 + 0 NA TTS (ENSMUSG00000022487.14) protein_coding-TTS (ENSMUSG00000022487.14) 23353 ENSMUSG00000104327.1 ENSMUSG00000104327 ENSMUST00000193409 Gm37322 TEC Interval_24163 chr11 30822408 30823072 + 0 NA promoter-TSS (ENSMUSG00000086986.3) processed_pseudogene-promoter-TSS (ENSMUSG00000086986.3) -70 ENSMUSG00000086986.3 ENSMUSG00000086986 ENSMUST00000121892 Gm12103 processed_pseudogene Interval_103698 chr3 51695677 51696371 + 0 NA TTS (ENSMUSG00000074603.3) TEC-TTS (ENSMUSG00000074603.3) 2308 ENSMUSG00000074603.3 ENSMUSG00000074603 ENSMUST00000099104 Gm10729 TEC Interval_13892 chr10 24325608 24327961 + 0 NA Intergenic Intergenic 103239 ENSMUSG00000020000.7 ENSMUSG00000020000 ENSMUST00000154916 Moxd1 protein_coding Interval_108604 chr3 129529087 129529857 + 0 NA intron (ENSMUSG00000105837.4, intron 2 of 2) antisense-intron (ENSMUSG00000105837.4, intron 2 of 2) -2883 ENSMUSG00000041220.10 ENSMUSG00000041220 ENSMUST00000198369 Elovl6 protein_coding Interval_88277 chr2 3228579 3229344 + 0 NA Intergenic Intergenic -55320 ENSMUSG00000026643.16 ENSMUSG00000026643 ENSMUST00000155761 Nmt2 protein_coding Interval_24847 chr11 40299727 40299997 + 0 NA intron (ENSMUSG00000085301.1, intron 6 of 7) lincRNA-intron (ENSMUSG00000085301.1, intron 6 of 7) 123492 ENSMUSG00000082295.1 ENSMUSG00000082295 ENSMUST00000121775 Gm12133 processed_pseudogene Interval_149211 chr7 96294839 96295570 + 0 NA intron (ENSMUSG00000048078.16, intron 1 of 32) protein_coding-intron (ENSMUSG00000048078.16, intron 1 of 32) -10463 ENSMUSG00000099030.1 ENSMUSG00000099030 ENSMUST00000184738 Mir6394 miRNA Interval_45814 chr13 58266070 58266795 + 0 NA intron (ENSMUSG00000021552.7, intron 1 of 1) protein_coding-intron (ENSMUSG00000021552.7, intron 1 of 11) -14759 ENSMUSG00000097399.7 ENSMUSG00000097399 ENSMUST00000190479 Gm26555 antisense Interval_101356 chr2 180739934 180741247 + 0 NA intron (ENSMUSG00000023393.15, intron 6 of 7) protein_coding-intron (ENSMUSG00000023393.15, intron 11 of 12) 4172 ENSMUSG00000023393.15 ENSMUSG00000023393 ENSMUST00000140955 Slc17a9 protein_coding Interval_133782 chr6 12106205 12108263 + 0 NA intron (ENSMUSG00000057223.6, intron 2 of 3) transcribed_processed_pseudogene-intron (ENSMUSG00000057223.6, intron 2 of 3) -6965 ENSMUSG00000057223.6 ENSMUSG00000057223 ENSMUST00000203684 Gm6578 transcribed_processed_pseudogene Interval_98090 chr2 147876851 147877125 + 0 NA Intergenic Intergenic -2110 ENSMUSG00000065791.1 ENSMUSG00000065791 ENSMUST00000083857 Gm25516 snRNA Interval_142344 chr6 140726930 140727871 + 0 NA Intergenic Intergenic -1884 ENSMUSG00000079264.1 ENSMUSG00000079264 ENSMUST00000111844 Gm11077 protein_coding Interval_8286 chr1 136939921 136940952 + 0 NA TTS (ENSMUSG00000026398.14) protein_coding-TTS (ENSMUSG00000026398.14) 8737 ENSMUSG00000026398.14 ENSMUSG00000026398 ENSMUST00000195428 Nr5a2 protein_coding Interval_104696 chr3 69515677 69516475 + 0 NA intron (ENSMUSG00000027784.10, intron 2 of 3) protein_coding-intron (ENSMUSG00000027784.10, intron 2 of 3) 18863 ENSMUSG00000027784.10 ENSMUSG00000027784 ENSMUST00000128637 Ppm1l protein_coding Interval_57799 chr15 20436147 20436411 + 0 NA Intergenic Intergenic -12911 ENSMUSG00000115122.1 ENSMUSG00000115122 ENSMUST00000228652 Gm49685 antisense Interval_34286 chr11 121977708 121978941 + 0 NA Intergenic Intergenic -7639 ENSMUSG00000082831.1 ENSMUSG00000082831 ENSMUST00000122407 Gm12591 unprocessed_pseudogene Interval_28116 chr11 72959646 72961915 + 0 NA promoter-TSS (ENSMUSG00000020788.15) protein_coding-promoter-TSS (ENSMUSG00000020788.15) -389 ENSMUSG00000020788.15 ENSMUSG00000020788 ENSMUST00000135234 Atp2a3 protein_coding Interval_114383 chr4 74512172 74512842 + 0 NA Intergenic Intergenic -122707 ENSMUSG00000099334.1 ENSMUSG00000099334 ENSMUST00000178125 Gm26379 snoRNA Interval_174497 chrX 153571853 153572172 + 0 NA Intergenic Intergenic 4582 ENSMUSG00000065221.1 ENSMUSG00000065221 ENSMUST00000083287 Gm25793 snRNA Interval_21642 chr11 3395901 3396855 + 0 NA TTS (ENSMUSG00000020451.17) protein_coding-TTS (ENSMUSG00000020451.17) -41467 ENSMUSG00000087055.1 ENSMUSG00000087055 ENSMUST00000142322 Gm11948 sense_intronic Interval_29856 chr11 87336772 87336981 + 0 NA intron (ENSMUSG00000046442.4, intron 1 of 3) protein_coding-intron (ENSMUSG00000046442.4, intron 1 of 6) -18077 ENSMUSG00000088001.1 ENSMUSG00000088001 ENSMUST00000157376 Gm22883 snRNA Interval_153985 chr8 11640643 11641118 + 0 NA Intergenic Intergenic 3598 ENSMUSG00000109810.1 ENSMUSG00000109810 ENSMUST00000209605 Gm45592 TEC Interval_108829 chr3 132084028 132087456 + 0 NA exon (ENSMUSG00000028031.6, exon 1 of 4) protein_coding-exon (ENSMUSG00000028031.6, exon 1 of 4) 450 ENSMUSG00000028031.6 ENSMUSG00000028031 ENSMUST00000029665 Dkk2 protein_coding Interval_99497 chr2 162614078 162614278 + 0 NA intron (ENSMUSG00000053141.16, intron 1 of 29) protein_coding-intron (ENSMUSG00000053141.16, intron 1 of 30) -46985 ENSMUSG00000054457.5 ENSMUSG00000054457 ENSMUST00000145985 9430021M05Rik processed_transcript Interval_173034 chrX 66649008 66649497 + 0 NA promoter-TSS (ENSMUSG00000036790.5) protein_coding-promoter-TSS (ENSMUSG00000036790.5) -66 ENSMUSG00000036790.5 ENSMUSG00000036790 ENSMUST00000036043 Slitrk2 protein_coding Interval_173319 chrX 79108251 79108871 + 0 NA Intergenic Intergenic -86486 ENSMUSG00000081049.1 ENSMUSG00000081049 ENSMUST00000118723 Rps24-ps3 processed_pseudogene Interval_152298 chr7 131556692 131557356 + 0 NA TTS (ENSMUSG00000050100.14) protein_coding-TTS (ENSMUSG00000050100.14) -3383 ENSMUSG00000066979.6 ENSMUSG00000066979 ENSMUST00000207442 Bub3 protein_coding Interval_121653 chr5 4374442 4374755 + 0 NA Intergenic Intergenic 182231 ENSMUSG00000053178.5 ENSMUSG00000053178 ENSMUST00000177258 Mterf1b protein_coding Interval_148793 chr7 87583831 87584802 + 0 NA promoter-TSS (ENSMUSG00000049583.15) protein_coding-promoter-TSS (ENSMUSG00000049583.15) -59 ENSMUSG00000049583.15 ENSMUSG00000049583 ENSMUST00000138732 Grm5 protein_coding Interval_33665 chr11 117815823 117817039 + 0 NA intron (ENSMUSG00000025574.13, intron 2 of 2) protein_coding-intron (ENSMUSG00000025574.13, intron 6 of 6) 6738 ENSMUSG00000048277.15 ENSMUSG00000048277 ENSMUST00000176936 Syngr2 protein_coding Interval_1069 chr1 14796472 14796674 + 0 NA Intergenic Intergenic 7928 ENSMUSG00000103492.1 ENSMUSG00000103492 ENSMUST00000194866 Gm37412 TEC Interval_90173 chr2 28741759 28742448 + 0 NA promoter-TSS (ENSMUSG00000026807.8) protein_coding-promoter-TSS (ENSMUSG00000026807.8) -147 ENSMUSG00000026807.8 ENSMUSG00000026807 ENSMUST00000137588 Ak8 protein_coding Interval_163394 chr9 21237525 21239708 + 0 NA exon (ENSMUSG00000003308.15, exon 1 of 5) protein_coding-exon (ENSMUSG00000003308.15, exon 1 of 5) 745 ENSMUSG00000003308.15 ENSMUSG00000003308 ENSMUST00000193247 Keap1 protein_coding Interval_17702 chr10 79644107 79644578 + 0 NA intron (ENSMUSG00000035963.8, intron 2 of 3) protein_coding-intron (ENSMUSG00000035963.8, intron 2 of 3) 1396 ENSMUSG00000035963.8 ENSMUSG00000035963 ENSMUST00000095464 Odf3l2 protein_coding Interval_147480 chr7 67644828 67646016 + 0 NA promoter-TSS (ENSMUSG00000030556.13) protein_coding-promoter-TSS (ENSMUSG00000030556.13) 7657 ENSMUSG00000109558.1 ENSMUSG00000109558 ENSMUST00000209153 Gm45100 processed_pseudogene Interval_136561 chr6 55629776 55629965 + 0 NA Intergenic Intergenic 51393 ENSMUSG00000037984.9 ENSMUSG00000037984 ENSMUST00000044767 Neurod6 protein_coding Interval_88587 chr2 6403445 6404448 + 0 NA intron (ENSMUSG00000039046.15, intron 4 of 6) protein_coding-intron (ENSMUSG00000039046.15, intron 4 of 13) -16976 ENSMUSG00000039046.15 ENSMUSG00000039046 ENSMUST00000150515 Usp6nl protein_coding Interval_22514 chr11 11297509 11297726 + 0 NA intron (ENSMUSG00000020193.3, intron 7 of 7) protein_coding-intron (ENSMUSG00000020193.3, intron 7 of 7) -14816 ENSMUSG00000082875.1 ENSMUSG00000082875 ENSMUST00000117333 Gm12598 processed_pseudogene Interval_57460 chr15 11379786 11381215 + 0 NA Intergenic Intergenic -18763 ENSMUSG00000089304.1 ENSMUSG00000089304 ENSMUST00000158679 Gm24844 snoRNA Interval_104647 chr3 69070839 69071131 + 0 NA exon (ENSMUSG00000027782.10, exon 17 of 17) protein_coding-exon (ENSMUSG00000027782.10, exon 17 of 17) 14462 ENSMUSG00000089417.1 ENSMUSG00000089417 ENSMUST00000158792 Gm22009 scaRNA Interval_56018 chr14 104467183 104468500 + 0 NA exon (ENSMUSG00000048349.9, exon 1 of 3) protein_coding-exon (ENSMUSG00000048349.9, exon 1 of 3) -2476 ENSMUSG00000048349.9 ENSMUSG00000048349 ENSMUST00000139505 Pou4f1 protein_coding Interval_144746 chr7 27974603 27975143 + 0 NA exon (ENSMUSG00000063047.9, exon 1 of 4) protein_coding-exon (ENSMUSG00000063047.9, exon 1 of 4) 495 ENSMUSG00000063047.9 ENSMUSG00000063047 ENSMUST00000207098 Zfp780b protein_coding Interval_107768 chr3 113669545 113670075 + 0 NA Intergenic Intergenic -37626 ENSMUSG00000105836.1 ENSMUSG00000105836 ENSMUST00000195893 Gm17954 processed_pseudogene Interval_115550 chr4 100712620 100712818 + 0 NA Intergenic Intergenic 131441 ENSMUSG00000082601.1 ENSMUSG00000082601 ENSMUST00000118145 Gm12700 processed_pseudogene Interval_153330 chr7 143661255 143662458 + 0 NA intron (ENSMUSG00000109251.1, intron 1 of 2) antisense-intron (ENSMUSG00000109251.1, intron 1 of 2) 24016 ENSMUSG00000037613.16 ENSMUSG00000037613 ENSMUST00000208613 Tnfrsf23 protein_coding Interval_161986 chr8 124271083 124271369 + 0 NA intron (ENSMUSG00000089704.9, intron 1 of 4) protein_coding-intron (ENSMUSG00000089704.9, intron 1 of 15) -24140 ENSMUSG00000089704.9 ENSMUSG00000089704 ENSMUST00000147911 Galnt2 protein_coding Interval_165172 chr9 44988662 44989235 + 0 NA Intergenic Intergenic 2996 ENSMUSG00000032094.8 ENSMUSG00000032094 ENSMUST00000214800 Cd3d protein_coding Interval_8880 chr1 151767101 151767489 + 0 NA intron (ENSMUSG00000043019.12, intron 2 of 20) protein_coding-intron (ENSMUSG00000043019.12, intron 2 of 19) 11835 ENSMUSG00000043019.12 ENSMUSG00000043019 ENSMUST00000191070 Edem3 protein_coding Interval_121246 chr4 154358324 154361171 + 0 NA intron (ENSMUSG00000039410.16, intron 4 of 4) protein_coding-intron (ENSMUSG00000039410.16, intron 4 of 16) 23620 ENSMUSG00000097871.1 ENSMUSG00000097871 ENSMUST00000181143 B230104I21Rik lincRNA Interval_146586 chr7 47071990 47072576 + 0 NA exon (ENSMUSG00000111473.1, exon 2 of 18) unitary_pseudogene-exon (ENSMUSG00000111473.1, exon 2 of 18) 2404 ENSMUSG00000111473.1 ENSMUSG00000111473 ENSMUST00000217248 LOC102637012 unitary_pseudogene Interval_79880 chr18 35709030 35709781 + 0 NA promoter-TSS (ENSMUSG00000024350.6) protein_coding-promoter-TSS (ENSMUSG00000024350.6) -991 ENSMUSG00000024350.6 ENSMUSG00000024350 ENSMUST00000236738 Dnajc18 protein_coding Interval_92987 chr2 69205581 69206585 + 0 NA promoter-TSS (ENSMUSG00000005233.16) protein_coding-promoter-TSS (ENSMUSG00000005233.16) 107 ENSMUSG00000005233.16 ENSMUSG00000005233 ENSMUST00000150505 Spc25 protein_coding Interval_103064 chr3 34809907 34810154 + 0 NA Intergenic Intergenic -16586 ENSMUSG00000114832.2 ENSMUSG00000114832 ENSMUST00000238552 Gm21388 lincRNA Interval_27986 chr11 71966087 71966609 + 0 NA Intergenic Intergenic -26226 ENSMUSG00000085528.1 ENSMUSG00000085528 ENSMUST00000128489 4930401O10Rik lincRNA Interval_106181 chr3 94377205 94378039 + 0 NA promoter-TSS (ENSMUSG00000104669.1) antisense-promoter-TSS (ENSMUSG00000104669.1) 106 ENSMUSG00000028150.14 ENSMUSG00000028150 ENSMUST00000200009 Rorc protein_coding Interval_152671 chr7 136049620 136050399 + 0 NA Intergenic Intergenic 97211 ENSMUSG00000098031.1 ENSMUSG00000098031 ENSMUST00000183000 Gm9341 processed_pseudogene Interval_107407 chr3 107350494 107351501 + 0 NA Intergenic Intergenic 8042 ENSMUSG00000105532.1 ENSMUSG00000105532 ENSMUST00000199575 Gm5279 processed_pseudogene Interval_36644 chr12 51720186 51722794 + 0 NA intron (ENSMUSG00000020955.9, intron 3 of 5) protein_coding-intron (ENSMUSG00000020955.9, intron 3 of 5) 18852 ENSMUSG00000089346.1 ENSMUSG00000089346 ENSMUST00000158721 Gm22663 snRNA Interval_91836 chr2 50065869 50067074 + 0 NA promoter-TSS (ENSMUSG00000050447.15) protein_coding-promoter-TSS (ENSMUSG00000050447.15) -61898 ENSMUSG00000050447.15 ENSMUSG00000050447 ENSMUST00000126337 Lypd6 protein_coding Interval_37835 chr12 72374104 72375523 + 0 NA intron (ENSMUSG00000021087.18, intron 1 of 8) protein_coding-intron (ENSMUSG00000021087.18, intron 1 of 8) -67222 ENSMUSG00000021090.16 ENSMUSG00000021090 ENSMUST00000221282 Lrrc9 protein_coding Interval_97453 chr2 136711877 136712314 + 0 NA Intergenic Intergenic -1359 ENSMUSG00000027273.13 ENSMUSG00000027273 ENSMUST00000110098 Snap25 protein_coding Interval_11562 chr1 182735933 182736892 + 0 NA Intergenic Intergenic 12768 ENSMUSG00000043429.7 ENSMUSG00000043429 ENSMUST00000060041 Ccdc185 protein_coding Interval_155205 chr8 27457463 27458124 + 0 NA intron (ENSMUSG00000063932.5, intron 5 of 8) protein_coding-intron (ENSMUSG00000063932.5, intron 5 of 13) 10123 ENSMUSG00000063932.5 ENSMUSG00000063932 ENSMUST00000081321 Poteg protein_coding Interval_80472 chr18 42518681 42520400 + 0 NA exon (ENSMUSG00000024498.16, exon 2 of 21) protein_coding-exon (ENSMUSG00000024498.16, exon 2 of 21) 32452 ENSMUSG00000118058.1 ENSMUSG00000118058 ENSMUST00000237473 Gm3631 processed_pseudogene Interval_97494 chr2 137756175 137757535 + 0 NA intron (ENSMUSG00000085640.1, intron 4 of 4) lincRNA-intron (ENSMUSG00000085640.1, intron 4 of 4) 93420 ENSMUSG00000085640.1 ENSMUSG00000085640 ENSMUST00000134833 Gm14064 lincRNA Interval_30757 chr11 96298994 96301144 + 0 NA intron (ENSMUSG00000000690.5, intron 2 of 2) protein_coding-intron (ENSMUSG00000000690.5, intron 1 of 1) -3267 ENSMUSG00000038700.4 ENSMUSG00000038700 ENSMUST00000049272 Hoxb5 protein_coding Interval_2201 chr1 36994155 36995112 + 0 NA Intergenic Intergenic -10806 ENSMUSG00000095944.1 ENSMUSG00000095944 ENSMUST00000177688 n-R5s210 rRNA Interval_94168 chr2 84809097 84811542 + 0 NA TTS (ENSMUSG00000027077.7) protein_coding-TTS (ENSMUSG00000027077.7) 4090 ENSMUSG00000027078.14 ENSMUSG00000027078 ENSMUST00000159150 Ube2l6 protein_coding Interval_10914 chr1 176965321 176965525 + 0 NA intron (ENSMUSG00000026504.17, intron 17 of 18) protein_coding-intron (ENSMUSG00000026504.17, intron 16 of 17) -8813 ENSMUSG00000103251.1 ENSMUSG00000103251 ENSMUST00000191687 Gm37519 TEC Interval_113078 chr4 47597612 47598781 + 0 NA Intergenic Intergenic 4859 ENSMUSG00000098999.1 ENSMUSG00000098999 ENSMUST00000184794 Gm27601 misc_RNA Interval_91688 chr2 47785731 47786320 + 0 NA Intergenic Intergenic 244041 ENSMUSG00000092853.1 ENSMUSG00000092853 ENSMUST00000175112 Gm25959 miRNA Interval_141140 chr6 125210373 125210625 + 0 NA Intergenic Intergenic -1808 ENSMUSG00000107995.1 ENSMUSG00000107995 ENSMUST00000205145 Gm44487 processed_pseudogene Interval_172405 chrX 18048244 18049315 + 0 NA Intergenic Intergenic -97078 ENSMUSG00000025043.3 ENSMUSG00000025043 ENSMUST00000026018 Dusp21 protein_coding Interval_96880 chr2 129204760 129205074 + 0 NA exon (ENSMUSG00000027397.14, exon 6 of 6) protein_coding-exon (ENSMUSG00000027397.14, exon 6 of 6) -5723 ENSMUSG00000103009.1 ENSMUSG00000103009 ENSMUST00000192413 Gm4430 TEC Interval_76664 chr17 83287686 83288425 + 0 NA promoter-TSS (ENSMUSG00000094256.2) processed_pseudogene-promoter-TSS (ENSMUSG00000094256.2) -491 ENSMUSG00000094256.2 ENSMUSG00000094256 ENSMUST00000077420 Rpl21-ps7 processed_pseudogene Interval_81997 chr18 67001056 67001267 + 0 NA Intergenic Intergenic 26996 ENSMUSG00000117798.1 ENSMUSG00000117798 ENSMUST00000237275 Gm50164 lincRNA Interval_130536 chr5 128621506 128622066 + 0 NA Intergenic Intergenic 20942 ENSMUSG00000081683.5 ENSMUSG00000081683 ENSMUST00000117102 Fzd10 protein_coding Interval_30971 chr11 97511133 97513530 + 0 NA TTS (ENSMUSG00000038453.17) protein_coding-TTS (ENSMUSG00000038453.17) 9564 ENSMUSG00000087042.1 ENSMUSG00000087042 ENSMUST00000134289 Gm11611 sense_intronic Interval_113415 chr4 54757646 54759129 + 0 NA Intergenic Intergenic 47763 ENSMUSG00000084710.1 ENSMUSG00000084710 ENSMUST00000122761 Gm24628 misc_RNA Interval_108950 chr3 133557104 133557325 + 0 NA intron (ENSMUSG00000105085.1, intron 1 of 2) antisense-intron (ENSMUSG00000105085.1, intron 1 of 2) 12117 ENSMUSG00000105085.1 ENSMUSG00000105085 ENSMUST00000199268 Gm42567 antisense Interval_56980 chr14 124665488 124665692 + 0 NA intron (ENSMUSG00000025551.13, intron 1 of 4) protein_coding-intron (ENSMUSG00000025551.13, intron 1 of 4) 11537 ENSMUSG00000025551.13 ENSMUSG00000025551 ENSMUST00000026631 Fgf14 protein_coding Interval_96395 chr2 122163904 122164193 + 0 NA intron (ENSMUSG00000033368.8, intron 1 of 7) protein_coding-intron (ENSMUSG00000027233.4, intron 2 of 17) 3246 ENSMUSG00000033368.8 ENSMUSG00000033368 ENSMUST00000143088 Trim69 protein_coding Interval_146903 chr7 55734454 55734691 + 0 NA Intergenic Intergenic 32418 ENSMUSG00000088640.1 ENSMUSG00000088640 ENSMUST00000158015 Gm26482 snRNA Interval_141929 chr6 135443917 135445294 + 0 NA Intergenic Intergenic 82060 ENSMUSG00000030208.15 ENSMUSG00000030208 ENSMUST00000111907 Emp1 protein_coding Interval_82551 chr18 75106749 75108671 + 0 NA intron (ENSMUSG00000035765.10, intron 8 of 16) protein_coding-intron (ENSMUSG00000035765.10, intron 8 of 16) -17715 ENSMUSG00000035765.10 ENSMUSG00000035765 ENSMUST00000236840 Dym protein_coding Interval_10894 chr1 176696817 176697728 + 0 NA Intergenic Intergenic -3345 ENSMUSG00000087875.1 ENSMUSG00000087875 ENSMUST00000157250 Gm26104 snRNA Interval_156627 chr8 55691778 55693033 + 0 NA Intergenic Intergenic 33052 ENSMUSG00000110064.1 ENSMUSG00000110064 ENSMUST00000211304 Gm18320 processed_pseudogene Interval_2939 chr1 51347587 51347835 + 0 NA Intergenic Intergenic -13932 ENSMUSG00000101799.1 ENSMUSG00000101799 ENSMUST00000189867 9330175M20Rik antisense Interval_73503 chr17 38203122 38203492 + 0 NA Intergenic Intergenic -1028 ENSMUSG00000057801.3 ENSMUSG00000057801 ENSMUST00000076245 Olfr135 protein_coding Interval_47130 chr13 76108787 76109640 + 0 NA intron (ENSMUSG00000033991.9, intron 5 of 44) protein_coding-intron (ENSMUSG00000033991.9, intron 5 of 43) -10553 ENSMUSG00000021592.18 ENSMUSG00000021592 ENSMUST00000224632 Arsk protein_coding Interval_138726 chr6 91456750 91457146 + 0 NA Intergenic Intergenic -10082 ENSMUSG00000108810.1 ENSMUSG00000108810 ENSMUST00000206951 Gm44629 processed_pseudogene Interval_112627 chr4 43685042 43686198 + 0 NA TTS (ENSMUSG00000078716.10) protein_coding-TTS (ENSMUSG00000078716.10) -7066 ENSMUSG00000088947.1 ENSMUSG00000088947 ENSMUST00000158322 Gm23257 rRNA Interval_169029 chr9 90457317 90457607 + 0 NA Intergenic Intergenic 105467 ENSMUSG00000065881.1 ENSMUSG00000065881 ENSMUST00000083947 Gm22866 snRNA Interval_28204 chr11 74353387 74353577 + 0 NA promoter-TSS (ENSMUSG00000054406.9) protein_coding-promoter-TSS (ENSMUSG00000054406.9) -832 ENSMUSG00000054406.9 ENSMUSG00000054406 ENSMUST00000141134 Olfr411 protein_coding Interval_124683 chr5 53240333 53241091 + 0 NA Intergenic Intergenic -26478 ENSMUSG00000061461.11 ENSMUSG00000061461 ENSMUST00000204089 Smim20 protein_coding Interval_99568 chr2 163278505 163279161 + 0 NA intron (ENSMUSG00000074607.11, intron 3 of 8) protein_coding-intron (ENSMUSG00000074607.11, intron 3 of 8) 53379 ENSMUSG00000074607.11 ENSMUSG00000074607 ENSMUST00000148599 Tox2 protein_coding Interval_89953 chr2 26763590 26764250 + 0 NA Intergenic Intergenic -40839 ENSMUSG00000082951.1 ENSMUSG00000082951 ENSMUST00000119000 Gm13359 processed_pseudogene Interval_158546 chr8 84373492 84374909 + 0 NA intron (ENSMUSG00000034656.18, intron 2 of 48) protein_coding-intron (ENSMUSG00000034656.18, intron 2 of 48) 6381 ENSMUSG00000064392.1 ENSMUSG00000064392 ENSMUST00000082458 Gm23626 snoRNA Interval_116090 chr4 107562051 107562441 + 0 NA intron (ENSMUSG00000034762.9, intron 1 of 9) protein_coding-intron (ENSMUSG00000034762.9, intron 2 of 10) -18957 ENSMUSG00000034762.9 ENSMUSG00000034762 ENSMUST00000125573 Glis1 protein_coding Interval_150517 chr7 111744201 111745142 + 0 NA intron (ENSMUSG00000038296.14, intron 1 of 10) protein_coding-intron (ENSMUSG00000038296.14, intron 1 of 10) 35306 ENSMUSG00000038296.14 ENSMUSG00000038296 ENSMUST00000106663 Galnt18 protein_coding Interval_5572 chr1 89899881 89900551 + 0 NA Intergenic Intergenic 28969 ENSMUSG00000034486.8 ENSMUSG00000034486 ENSMUST00000187633 Gbx2 protein_coding Interval_130851 chr5 132595730 132596068 + 0 NA Intergenic Intergenic 49843 ENSMUSG00000105809.1 ENSMUSG00000105809 ENSMUST00000196866 Gm42626 lincRNA Interval_110435 chr3 158091164 158092202 + 0 NA intron (ENSMUSG00000028176.13, intron 24 of 24) protein_coding-intron (ENSMUSG00000028176.13, intron 27 of 27) -15571 ENSMUSG00000104597.1 ENSMUSG00000104597 ENSMUST00000200255 B230334C09Rik antisense Interval_103323 chr3 38776364 38777277 + 0 NA Intergenic Intergenic 111439 ENSMUSG00000086181.1 ENSMUSG00000086181 ENSMUST00000153659 C230034O21Rik antisense Interval_21349 chr10 128110710 128111339 + 0 NA exon (ENSMUSG00000040054.17, exon 4 of 30) protein_coding-exon (ENSMUSG00000040054.17, exon 4 of 30) 19442 ENSMUSG00000040054.17 ENSMUSG00000040054 ENSMUST00000219980 Baz2a protein_coding Interval_132214 chr5 143381288 143382088 + 0 NA exon (ENSMUSG00000010825.17, exon 11 of 21) protein_coding-exon (ENSMUSG00000010825.17, exon 11 of 21) 8714 ENSMUSG00000010825.17 ENSMUSG00000010825 ENSMUST00000138948 Grid2ip protein_coding Interval_162188 chr8 125784468 125784686 + 0 NA intron (ENSMUSG00000060212.13, intron 10 of 18) protein_coding-intron (ENSMUSG00000060212.13, intron 25 of 33) 44456 ENSMUSG00000060212.13 ENSMUSG00000060212 ENSMUST00000187772 Pcnx2 protein_coding Interval_32308 chr11 106814776 106815473 + 0 NA intron (ENSMUSG00000084930.1, intron 1 of 2) protein_coding-intron (ENSMUSG00000018372.13, intron 14 of 19) 884 ENSMUSG00000084930.1 ENSMUSG00000084930 ENSMUST00000151282 Gm11706 antisense Interval_121823 chr5 8519024 8519673 + 0 NA intron (ENSMUSG00000040570.14, intron 8 of 10) protein_coding-intron (ENSMUSG00000040570.14, intron 8 of 9) -4496 ENSMUSG00000105740.1 ENSMUSG00000105740 ENSMUST00000200378 Gm42685 TEC Interval_112691 chr4 44106143 44106697 + 0 NA exon (ENSMUSG00000087326.1, exon 2 of 2) processed_transcript-exon (ENSMUSG00000087326.1, exon 2 of 2) 13788 ENSMUSG00000087326.1 ENSMUSG00000087326 ENSMUST00000146576 Gm12503 processed_transcript Interval_150752 chr7 114108833 114109487 + 0 NA intron (ENSMUSG00000055723.6, intron 1 of 5) protein_coding-intron (ENSMUSG00000055723.6, intron 1 of 5) 8604 ENSMUSG00000055723.6 ENSMUSG00000055723 ENSMUST00000210075 Rras2 protein_coding Interval_109744 chr3 146490694 146490930 + 0 NA intron (ENSMUSG00000028188.13, intron 1 of 13) protein_coding-intron (ENSMUSG00000028188.13, intron 2 of 14) -9297 ENSMUSG00000068523.12 ENSMUSG00000068523 ENSMUST00000119130 Gng5 protein_coding Interval_38699 chr12 81174251 81174582 + 0 NA intron (ENSMUSG00000021136.13, intron 10 of 11) protein_coding-intron (ENSMUSG00000021136.13, intron 10 of 12) 8265 ENSMUSG00000092673.1 ENSMUSG00000092673 ENSMUST00000174932 Mir3067 miRNA Interval_11711 chr1 184824118 184825355 + 0 NA intron (ENSMUSG00000073481.9, intron 4 of 5) protein_coding-intron (ENSMUSG00000073481.9, intron 4 of 7) -2248 ENSMUSG00000088559.1 ENSMUSG00000088559 ENSMUST00000157934 Mir1981 miRNA Interval_81977 chr18 66703018 66703401 + 0 NA Intergenic Intergenic 26848 ENSMUSG00000088187.1 ENSMUSG00000088187 ENSMUST00000157562 Gm50110 misc_RNA Interval_152461 chr7 133114586 133116199 + 0 NA intron (ENSMUSG00000030970.16, intron 1 of 6) protein_coding-intron (ENSMUSG00000030970.16, intron 1 of 10) 4879 ENSMUSG00000110282.1 ENSMUSG00000110282 ENSMUST00000209529 B930086L07Rik TEC Interval_63808 chr15 103626928 103627578 + 0 NA Intergenic Intergenic -22539 ENSMUSG00000115329.1 ENSMUSG00000115329 ENSMUST00000228461 Gm49272 lincRNA Interval_76337 chr17 79198350 79198803 + 0 NA Intergenic Intergenic 59473 ENSMUSG00000117047.1 ENSMUSG00000117047 ENSMUST00000232946 Gm5230 processed_pseudogene Interval_20155 chr10 115304584 115305358 + 0 NA intron (ENSMUSG00000020132.10, intron 1 of 6) protein_coding-intron (ENSMUSG00000020132.10, intron 1 of 6) 10623 ENSMUSG00000020132.10 ENSMUSG00000020132 ENSMUST00000218831 Rab21 protein_coding Interval_152286 chr7 131391947 131392530 + 0 NA TTS (ENSMUSG00000040167.16) protein_coding-TTS (ENSMUSG00000040167.16) 1419 ENSMUSG00000040167.16 ENSMUSG00000040167 ENSMUST00000142349 Ikzf5 protein_coding Interval_112194 chr4 35512652 35512878 + 0 NA Intergenic Intergenic 76551 ENSMUSG00000083851.1 ENSMUSG00000083851 ENSMUST00000117931 Gm12365 processed_pseudogene Interval_146894 chr7 55490330 55490655 + 0 NA Intergenic Intergenic 28423 ENSMUSG00000108744.1 ENSMUSG00000108744 ENSMUST00000205703 Gm9367 processed_pseudogene Interval_60403 chr15 73532514 73534553 + 0 NA intron (ENSMUSG00000036661.14, intron 7 of 23) protein_coding-intron (ENSMUSG00000036661.14, intron 7 of 22) 20861 ENSMUSG00000036661.14 ENSMUSG00000036661 ENSMUST00000160727 Dennd3 protein_coding Interval_81829 chr18 65058695 65059297 + 0 NA intron (ENSMUSG00000024589.18, intron 1 of 26) protein_coding-intron (ENSMUSG00000024589.18, intron 1 of 29) -24058 ENSMUSG00000024589.18 ENSMUSG00000024589 ENSMUST00000236100 Nedd4l protein_coding Interval_18364 chr10 85227147 85227404 + 0 NA intron (ENSMUSG00000111752.1, intron 2 of 2) processed_transcript-intron (ENSMUSG00000111752.1, intron 2 of 2) 39047 ENSMUSG00000111752.1 ENSMUSG00000111752 ENSMUST00000213881 Gm38575 processed_transcript Interval_57401 chr15 10598099 10599709 + 0 NA intron (ENSMUSG00000022246.14, intron 5 of 16) protein_coding-intron (ENSMUSG00000022246.14, intron 5 of 17) -1433 ENSMUSG00000115667.1 ENSMUSG00000115667 ENSMUST00000228059 Gm10389 antisense Interval_141896 chr6 135207383 135208071 + 0 NA intron (ENSMUSG00000030207.15, intron 1 of 1) protein_coding-intron (ENSMUSG00000030207.15, intron 1 of 12) 19247 ENSMUSG00000108239.1 ENSMUSG00000108239 ENSMUST00000204330 Gm19434 antisense Interval_26335 chr11 56454415 56454617 + 0 NA Intergenic Intergenic -4833 ENSMUSG00000081749.3 ENSMUSG00000081749 ENSMUST00000118330 Gm12241 processed_pseudogene Interval_93567 chr2 74461015 74461951 + 0 NA Intergenic Intergenic 93513 ENSMUSG00000009207.15 ENSMUSG00000009207 ENSMUST00000134168 Lnpk protein_coding Interval_64154 chr16 8750810 8751057 + 0 NA intron (ENSMUSG00000022710.17, intron 2 of 31) protein_coding-intron (ENSMUSG00000022710.17, intron 2 of 31) 15343 ENSMUSG00000084737.1 ENSMUSG00000084737 ENSMUST00000122788 Gm25805 snRNA Interval_151612 chr7 125263768 125264125 + 0 NA Intergenic Intergenic -44060 ENSMUSG00000073844.5 ENSMUSG00000073844 ENSMUST00000073056 Gm21957 processed_pseudogene Interval_6995 chr1 121617675 121617944 + 0 NA Intergenic Intergenic 28040 ENSMUSG00000102006.1 ENSMUSG00000102006 ENSMUST00000185259 Gm28591 processed_pseudogene Interval_83788 chr19 4722028 4722249 + 0 NA intron (ENSMUSG00000067889.6, intron 1 of 1) protein_coding-intron (ENSMUSG00000067889.6, intron 2 of 36) 1059 ENSMUSG00000067889.6 ENSMUSG00000067889 ENSMUST00000238162 Sptbn2 protein_coding Interval_136162 chr6 51592191 51593294 + 0 NA Intergenic Intergenic -28890 ENSMUSG00000094528.1 ENSMUSG00000094528 ENSMUST00000175195 Gm22914 miRNA Interval_148702 chr7 84285702 84286575 + 0 NA intron (ENSMUSG00000015709.9, intron 9 of 19) protein_coding-intron (ENSMUSG00000015709.9, intron 8 of 18) 37277 ENSMUSG00000065227.1 ENSMUSG00000065227 ENSMUST00000083293 Gm25790 snRNA Interval_143506 chr7 11079333 11080717 + 0 NA Intergenic Intergenic -2858 ENSMUSG00000109730.1 ENSMUSG00000109730 ENSMUST00000211511 Gm7151 unprocessed_pseudogene Interval_85706 chr19 29830598 29831686 + 0 NA Intergenic Intergenic -18188 ENSMUSG00000074909.5 ENSMUSG00000074909 ENSMUST00000235906 Ranbp6 protein_coding Interval_57630 chr15 12936096 12938584 + 0 NA Intergenic Intergenic -18382 ENSMUSG00000115807.1 ENSMUSG00000115807 ENSMUST00000226269 Gm49100 unprocessed_pseudogene Interval_53016 chr14 53537763 53538290 + 0 NA promoter-TSS (ENSMUSG00000096825.2) TR_V_gene-promoter-TSS (ENSMUSG00000096825.2) -165 ENSMUSG00000096825.2 ENSMUSG00000096825 ENSMUST00000103650 Trav12-1 TR_V_gene Interval_109103 chr3 135768130 135768386 + 0 NA Intergenic Intergenic -57399 ENSMUSG00000053897.15 ENSMUSG00000053897 ENSMUST00000133810 Slc39a8 protein_coding Interval_128344 chr5 112643790 112644089 + 0 NA Intergenic Intergenic 3604 ENSMUSG00000105735.1 ENSMUSG00000105735 ENSMUST00000195895 4933415J04Rik TEC Interval_106242 chr3 94861057 94861402 + 0 NA intron (ENSMUSG00000038902.14, intron 4 of 6) protein_coding-intron (ENSMUSG00000038902.14, intron 4 of 18) -16426 ENSMUSG00000038902.14 ENSMUSG00000038902 ENSMUST00000142253 Pogz protein_coding Interval_149012 chr7 91863175 91864316 + 0 NA intron (ENSMUSG00000052572.19, intron 3 of 3) protein_coding-intron (ENSMUSG00000052572.19, intron 4 of 22) -44318 ENSMUSG00000108953.1 ENSMUSG00000108953 ENSMUST00000208444 Gm45129 TEC Interval_55303 chr14 81612232 81612691 + 0 NA Intergenic Intergenic -73349 ENSMUSG00000115455.1 ENSMUSG00000115455 ENSMUST00000227374 Gm41219 lincRNA Interval_131343 chr5 136597741 136599211 + 0 NA Intergenic Intergenic -30986 ENSMUSG00000029705.17 ENSMUSG00000029705 ENSMUST00000177305 Cux1 protein_coding Interval_19345 chr10 97345126 97345968 + 0 NA Intergenic Intergenic -77931 ENSMUSG00000105557.1 ENSMUSG00000105557 ENSMUST00000198473 Mir3966 miRNA Interval_16210 chr10 61439830 61440830 + 0 NA intron (ENSMUSG00000020091.15, intron 2 of 3) protein_coding-intron (ENSMUSG00000020091.15, intron 1 of 2) 10387 ENSMUSG00000112229.1 ENSMUSG00000112229 ENSMUST00000220281 Gm48086 sense_intronic Interval_46542 chr13 66969795 66970236 + 0 NA intron (ENSMUSG00000021518.4, intron 6 of 12) protein_coding-intron (ENSMUSG00000021518.4, intron 6 of 12) 24692 ENSMUSG00000021518.4 ENSMUSG00000021518 ENSMUST00000224175 Ptdss1 protein_coding Interval_123269 chr5 31012354 31012764 + 0 NA Intergenic Intergenic 30046 ENSMUSG00000006641.12 ENSMUSG00000006641 ENSMUST00000200816 Slc5a6 protein_coding Interval_170459 chr9 108114721 108115688 + 0 NA exon (ENSMUSG00000032589.14, exon 5 of 12) protein_coding-exon (ENSMUSG00000032589.14, exon 5 of 12) -4791 ENSMUSG00000032589.14 ENSMUSG00000032589 ENSMUST00000124763 Bsn protein_coding Interval_72078 chr17 27881364 27881850 + 0 NA exon (ENSMUSG00000039512.12, exon 8 of 21) protein_coding-exon (ENSMUSG00000039512.12, exon 8 of 21) -12629 ENSMUSG00000117161.1 ENSMUSG00000117161 ENSMUST00000233253 Gm49803 processed_pseudogene Interval_83781 chr19 4666967 4667194 + 0 NA intron (ENSMUSG00000071691.11, intron 4 of 15) protein_coding-intron (ENSMUSG00000071691.11, intron 4 of 9) -13035 ENSMUSG00000117746.1 ENSMUSG00000117746 ENSMUST00000236726 Gm50372 processed_pseudogene Interval_120084 chr4 141722764 141723974 + 0 NA promoter-TSS (ENSMUSG00000078515.4) protein_coding-promoter-TSS (ENSMUSG00000078515.4) 50 ENSMUSG00000078515.4 ENSMUSG00000078515 ENSMUST00000177592 Ddi2 protein_coding Interval_7005 chr1 121748487 121748993 + 0 NA Intergenic Intergenic 42225 ENSMUSG00000102488.1 ENSMUSG00000102488 ENSMUST00000192952 Gm37920 TEC Interval_14761 chr10 39649743 39651154 + 0 NA promoter-TSS (ENSMUSG00000019842.6) protein_coding-promoter-TSS (ENSMUSG00000019842.6) 3734 ENSMUSG00000019842.6 ENSMUSG00000019842 ENSMUST00000155945 Traf3ip2 protein_coding Interval_11436 chr1 181931402 181932192 + 0 NA intron (ENSMUSG00000022995.16, intron 3 of 14) protein_coding-intron (ENSMUSG00000022995.16, intron 4 of 14) 21578 ENSMUSG00000103722.1 ENSMUSG00000103722 ENSMUST00000194331 2700078F05Rik TEC Interval_14691 chr10 39064747 39065659 + 0 NA intron (ENSMUSG00000019846.11, intron 15 of 37) protein_coding-intron (ENSMUSG00000019846.11, intron 15 of 37) -40578 ENSMUSG00000019846.11 ENSMUSG00000019846 ENSMUST00000163036 Lama4 protein_coding Interval_112405 chr4 41074364 41075223 + 0 NA Intergenic Intergenic 19655 ENSMUSG00000028435.8 ENSMUSG00000028435 ENSMUST00000154722 Aqp3 protein_coding Interval_59760 chr15 59080377 59083481 + 0 NA promoter-TSS (ENSMUSG00000022353.10) protein_coding-promoter-TSS (ENSMUSG00000022353.10) 76 ENSMUSG00000022353.10 ENSMUSG00000022353 ENSMUST00000227797 Mtss1 protein_coding Interval_81188 chr18 56132390 56133307 + 0 NA Intergenic Intergenic -60151 ENSMUSG00000088440.1 ENSMUSG00000088440 ENSMUST00000157815 Gm23555 snoRNA Interval_9369 chr1 156615397 156616159 + 0 NA promoter-TSS (ENSMUSG00000026596.13) protein_coding-promoter-TSS (ENSMUSG00000026596.13) -145 ENSMUSG00000026596.13 ENSMUSG00000026596 ENSMUST00000190749 Abl2 protein_coding Interval_72433 chr17 29785881 29786556 + 0 NA Intergenic Intergenic 33169 ENSMUSG00000117489.1 ENSMUSG00000117489 ENSMUST00000234919 Gm50016 lincRNA Interval_173282 chrX 76201246 76201623 + 0 NA Intergenic Intergenic 5326 ENSMUSG00000082827.3 ENSMUSG00000082827 ENSMUST00000121081 Gm5397 unprocessed_pseudogene Interval_69647 chr16 94827695 94828769 + 0 NA intron (ENSMUSG00000043301.16, intron 2 of 2) protein_coding-intron (ENSMUSG00000043301.16, intron 3 of 4) 28440 ENSMUSG00000043301.16 ENSMUSG00000043301 ENSMUST00000231744 Kcnj6 protein_coding Interval_7297 chr1 128552124 128552864 + 0 NA Intergenic Intergenic -31034 ENSMUSG00000100078.1 ENSMUSG00000100078 ENSMUST00000187672 Gm6170 processed_pseudogene Interval_60941 chr15 78037363 78038106 + 0 NA intron (ENSMUSG00000019146.2, intron 1 of 3) protein_coding-intron (ENSMUSG00000019146.2, intron 1 of 3) -73962 ENSMUSG00000016554.9 ENSMUSG00000016554 ENSMUST00000229713 Eif3d protein_coding Interval_55314 chr14 82409199 82409687 + 0 NA Intergenic Intergenic -24914 ENSMUSG00000089266.1 ENSMUSG00000089266 ENSMUST00000158641 Gm22891 snRNA Interval_159663 chr8 96318124 96318883 + 0 NA TTS (ENSMUSG00000077272.1) snoRNA-TTS (ENSMUSG00000077272.1) 115 ENSMUSG00000077272.1 ENSMUSG00000077272 ENSMUST00000104084 Gm22780 snoRNA Interval_88921 chr2 12923505 12924764 + 0 NA promoter-TSS (ENSMUSG00000026730.12) protein_coding-promoter-TSS (ENSMUSG00000026730.12) -53805 ENSMUSG00000026730.12 ENSMUSG00000026730 ENSMUST00000195521 Pter protein_coding Interval_99786 chr2 164894617 164895328 + 0 NA TTS (ENSMUSG00000039849.6) protein_coding-TTS (ENSMUSG00000039849.6) 15668 ENSMUSG00000039849.6 ENSMUSG00000039849 ENSMUST00000130213 Pcif1 protein_coding Interval_89926 chr2 26525528 26526390 + 0 NA Intergenic Intergenic -32666 ENSMUSG00000082864.1 ENSMUSG00000082864 ENSMUST00000121427 Gm13358 processed_pseudogene Interval_141864 chr6 134983332 134984366 + 0 NA exon (ENSMUSG00000090698.2, exon 2 of 2) protein_coding-exon (ENSMUSG00000090698.2, exon 2 of 2) 2131 ENSMUSG00000090698.2 ENSMUSG00000090698 ENSMUST00000167323 Apold1 protein_coding Interval_136969 chr6 65137569 65138132 + 0 NA intron (ENSMUSG00000029919.5, intron 1 of 2) protein_coding-intron (ENSMUSG00000029919.5, intron 2 of 5) 9279 ENSMUSG00000090939.1 ENSMUSG00000090939 ENSMUST00000164176 Gm17147 processed_pseudogene Interval_133591 chr6 7294516 7294918 + 0 NA Intergenic Intergenic -7191 ENSMUSG00000098501.7 ENSMUSG00000098501 ENSMUST00000184133 Gm19272 lincRNA Interval_10183 chr1 166794769 166795043 + 0 NA Intergenic Intergenic 3933 ENSMUSG00000103073.1 ENSMUSG00000103073 ENSMUST00000195591 Gm37904 processed_pseudogene Interval_137545 chr6 73026645 73027127 + 0 NA intron (ENSMUSG00000052861.13, intron 70 of 75) protein_coding-intron (ENSMUSG00000052861.13, intron 71 of 76) 14843 ENSMUSG00000107546.1 ENSMUSG00000107546 ENSMUST00000204577 Gm20560 antisense Interval_107413 chr3 107416831 107417611 + 0 NA Intergenic Intergenic -1026 ENSMUSG00000084640.1 ENSMUSG00000084640 ENSMUST00000122691 Gm24383 misc_RNA Interval_137652 chr6 77633991 77634248 + 0 NA intron (ENSMUSG00000063063.12, intron 6 of 7) protein_coding-intron (ENSMUSG00000063063.12, intron 6 of 17) -45638 ENSMUSG00000107707.1 ENSMUSG00000107707 ENSMUST00000204098 Gm44286 TEC Interval_60119 chr15 65889294 65889802 + 0 NA promoter-TSS (ENSMUSG00000015001.17) protein_coding-promoter-TSS (ENSMUSG00000015001.17) 12013 ENSMUSG00000015001.17 ENSMUSG00000015001 ENSMUST00000147776 Oc90 protein_coding Interval_86812 chr19 44026752 44027653 + 0 NA intron (ENSMUSG00000025197.9, intron 1 of 7) protein_coding-intron (ENSMUSG00000025197.9, intron 1 of 8) 2006 ENSMUSG00000025197.9 ENSMUSG00000025197 ENSMUST00000211830 Cyp2c23 protein_coding Interval_73689 chr17 42824144 42824655 + 0 NA intron (ENSMUSG00000061665.7, intron 7 of 15) protein_coding-intron (ENSMUSG00000061665.7, intron 9 of 17) 6631 ENSMUSG00000061665.7 ENSMUSG00000061665 ENSMUST00000233626 Cd2ap protein_coding Interval_14036 chr10 25831263 25831967 + 0 NA exon (ENSMUSG00000112491.1, exon 1 of 3) processed_pseudogene-exon (ENSMUSG00000112491.1, exon 1 of 3) 481 ENSMUSG00000112491.1 ENSMUSG00000112491 ENSMUST00000218231 Gm19801 processed_pseudogene Interval_135629 chr6 41846704 41846928 + 0 NA promoter-TSS (ENSMUSG00000058499.9) protein_coding-promoter-TSS (ENSMUSG00000058499.9) -769 ENSMUSG00000058499.9 ENSMUSG00000058499 ENSMUST00000204575 Pip protein_coding Interval_118786 chr4 133691935 133692308 + 0 NA intron (ENSMUSG00000007880.16, intron 10 of 19) protein_coding-intron (ENSMUSG00000007880.16, intron 10 of 19) -19474 ENSMUSG00000043257.15 ENSMUSG00000043257 ENSMUST00000151837 Pigv protein_coding Interval_151979 chr7 127929326 127930183 + 0 NA intron (ENSMUSG00000030800.10, intron 1 of 4) protein_coding-intron (ENSMUSG00000030800.10, intron 1 of 5) 341 ENSMUSG00000030800.10 ENSMUSG00000030800 ENSMUST00000206568 Prss8 protein_coding Interval_31988 chr11 104321887 104322741 + 0 NA exon (ENSMUSG00000018411.17, exon 1 of 2) protein_coding-exon (ENSMUSG00000018411.17, exon 1 of 2) -62953 ENSMUSG00000085134.1 ENSMUSG00000085134 ENSMUST00000137561 Gm11659 antisense Interval_33944 chr11 119575714 119575953 + 0 NA Intergenic Intergenic 27203 ENSMUSG00000087675.1 ENSMUSG00000087675 ENSMUST00000135630 Gm11762 processed_transcript Interval_42494 chr13 14093352 14094282 + 0 NA intron (ENSMUSG00000039219.18, intron 1 of 8) protein_coding-intron (ENSMUSG00000039219.18, intron 2 of 22) 6378 ENSMUSG00000064653.1 ENSMUSG00000064653 ENSMUST00000082719 Gm26129 snRNA Interval_141645 chr6 131765204 131765976 + 0 NA Intergenic Intergenic -75527 ENSMUSG00000063478.2 ENSMUSG00000063478 ENSMUST00000080619 Tas2r114 protein_coding Interval_60516 chr15 74586411 74586742 + 0 NA intron (ENSMUSG00000034730.17, intron 6 of 9) protein_coding-intron (ENSMUSG00000034730.17, intron 27 of 30) -1348 ENSMUSG00000034730.17 ENSMUSG00000034730 ENSMUST00000230935 Adgrb1 protein_coding Interval_10696 chr1 173211484 173211668 + 0 NA promoter-TSS (ENSMUSG00000049456.3) protein_coding-promoter-TSS (ENSMUSG00000049456.3) -816 ENSMUSG00000049456.3 ENSMUSG00000049456 ENSMUST00000056592 Olfr1404 protein_coding Interval_86499 chr19 41139377 41139736 + 0 NA intron (ENSMUSG00000025013.15, intron 4 of 20) protein_coding-intron (ENSMUSG00000025013.15, intron 4 of 20) 67218 ENSMUSG00000025013.15 ENSMUSG00000025013 ENSMUST00000169941 Tll2 protein_coding Interval_165852 chr9 53821511 53822037 + 0 NA Intergenic Intergenic 11057 ENSMUSG00000042195.9 ENSMUSG00000042195 ENSMUST00000216515 Slc35f2 protein_coding Interval_21402 chr10 128380544 128381012 + 0 NA intron (ENSMUSG00000014498.9, intron 6 of 14) protein_coding-intron (ENSMUSG00000014498.9, intron 6 of 27) -2060 ENSMUSG00000098701.1 ENSMUSG00000098701 ENSMUST00000184999 Mir6914 miRNA Interval_99343 chr2 159656140 159656567 + 0 NA Intergenic Intergenic 121854 ENSMUSG00000083451.1 ENSMUSG00000083451 ENSMUST00000119101 Gm11445 processed_pseudogene Interval_94440 chr2 91236451 91237782 + 0 NA promoter-TSS (ENSMUSG00000002109.14) protein_coding-promoter-TSS (ENSMUSG00000002109.14) -1785 ENSMUSG00000002109.14 ENSMUSG00000002109 ENSMUST00000028696 Ddb2 protein_coding Interval_76465 chr17 80401363 80401843 + 0 NA intron (ENSMUSG00000024241.7, intron 20 of 21) protein_coding-intron (ENSMUSG00000024241.7, intron 20 of 21) 20239 ENSMUSG00000054901.7 ENSMUSG00000054901 ENSMUST00000226013 Arhgef33 protein_coding Interval_167115 chr9 65434156 65434493 + 0 NA Intergenic Intergenic -2701 ENSMUSG00000059183.12 ENSMUSG00000059183 ENSMUST00000130057 Mtfmt protein_coding Interval_58389 chr15 34075837 34076105 + 0 NA Intergenic Intergenic 22853 ENSMUSG00000115440.1 ENSMUSG00000115440 ENSMUST00000227515 Gm49091 processed_pseudogene Interval_103586 chr3 50521770 50521983 + 0 NA intron (ENSMUSG00000102715.1, intron 4 of 4) processed_transcript-intron (ENSMUSG00000102715.1, intron 4 of 4) 54641 ENSMUSG00000102895.1 ENSMUSG00000102895 ENSMUST00000192543 5830415G21Rik TEC Interval_9795 chr1 162430877 162431128 + 0 NA intron (ENSMUSG00000040265.16, intron 1 of 5) protein_coding-intron (ENSMUSG00000040265.16, intron 1 of 19) -23667 ENSMUSG00000040265.16 ENSMUSG00000040265 ENSMUST00000195768 Dnm3 protein_coding Interval_24136 chr11 30664141 30664339 + 0 NA Intergenic Intergenic -14653 ENSMUSG00000060923.5 ENSMUSG00000060923 ENSMUST00000074613 Acyp2 protein_coding Interval_54863 chr14 75886643 75886948 + 0 NA Intergenic Intergenic 38890 ENSMUSG00000065147.1 ENSMUSG00000065147 ENSMUST00000083213 Snora31 snoRNA Interval_51406 chr14 27271559 27273598 + 0 NA intron (ENSMUSG00000021895.10, intron 5 of 13) protein_coding-intron (ENSMUSG00000021895.10, intron 2 of 10) 34516 ENSMUSG00000114888.1 ENSMUSG00000114888 ENSMUST00000225718 Gm49616 TEC Interval_8121 chr1 135821639 135821912 + 0 NA intron (ENSMUSG00000041782.14, intron 1 of 9) protein_coding-intron (ENSMUSG00000041782.14, intron 1 of 9) -8220 ENSMUSG00000041782.14 ENSMUSG00000041782 ENSMUST00000185756 Lad1 protein_coding Interval_110680 chr4 6302568 6303365 + 0 NA Intergenic Intergenic -27333 ENSMUSG00000028240.2 ENSMUSG00000028240 ENSMUST00000147346 Cyp7a1 protein_coding Interval_79785 chr18 35103637 35104280 + 0 NA intron (ENSMUSG00000118380.1, intron 5 of 5) processed_transcript-intron (ENSMUSG00000118380.1, intron 5 of 5) -16335 ENSMUSG00000117727.1 ENSMUSG00000117727 ENSMUST00000238134 Gm3587 lincRNA Interval_135229 chr6 37669335 37669668 + 0 NA Intergenic Intergenic 17694 ENSMUSG00000107035.1 ENSMUSG00000107035 ENSMUST00000201305 Ybx1-ps2 processed_pseudogene Interval_66012 chr16 30953725 30954179 + 0 NA Intergenic Intergenic -18323 ENSMUSG00000116581.1 ENSMUSG00000116581 ENSMUST00000232539 Gm46565 lincRNA Interval_68575 chr16 79015171 79015887 + 0 NA intron (ENSMUSG00000022857.13, intron 15 of 26) protein_coding-intron (ENSMUSG00000022857.13, intron 16 of 27) 51433 ENSMUSG00000085094.2 ENSMUSG00000085094 ENSMUST00000152173 Gm15692 processed_pseudogene Interval_174137 chrX 136127076 136127960 + 0 NA Intergenic Intergenic -11478 ENSMUSG00000047844.3 ENSMUSG00000047844 ENSMUST00000116527 Bex4 protein_coding Interval_109146 chr3 136761568 136761832 + 0 NA intron (ENSMUSG00000028161.17, intron 1 of 12) protein_coding-intron (ENSMUSG00000028161.17, intron 1 of 13) -1740 ENSMUSG00000105545.1 ENSMUSG00000105545 ENSMUST00000198822 4930599N24Rik TEC Interval_151539 chr7 123369381 123370681 + 0 NA promoter-TSS (ENSMUSG00000030766.15) protein_coding-promoter-TSS (ENSMUSG00000030766.15) -180 ENSMUSG00000030766.15 ENSMUSG00000030766 ENSMUST00000205805 Arhgap17 protein_coding Interval_144695 chr7 27574150 27574927 + 0 NA promoter-TSS (ENSMUSG00000049643.15) protein_coding-promoter-TSS (ENSMUSG00000049643.15) -17208 ENSMUSG00000004056.15 ENSMUSG00000004056 ENSMUST00000136981 Akt2 protein_coding Interval_144374 chr7 24759340 24760281 + 0 NA intron (ENSMUSG00000052212.6, intron 2 of 16) protein_coding-intron (ENSMUSG00000052212.6, intron 2 of 16) -8989 ENSMUSG00000052212.6 ENSMUSG00000052212 ENSMUST00000206160 Cd177 protein_coding Interval_53568 chr14 59370309 59371072 + 0 NA Intergenic Intergenic -5250 ENSMUSG00000068245.14 ENSMUSG00000068245 ENSMUST00000161031 Phf11d protein_coding Interval_94231 chr2 85807226 85807424 + 0 NA TTS (ENSMUSG00000081057.2) unprocessed_pseudogene-TTS (ENSMUSG00000081057.2) 1655 ENSMUSG00000081057.2 ENSMUSG00000081057 ENSMUST00000121263 Olfr1017-ps1 unprocessed_pseudogene Interval_91223 chr2 36048662 36049853 + 0 NA promoter-TSS (ENSMUSG00000026894.4) protein_coding-promoter-TSS (ENSMUSG00000026894.4) 149 ENSMUSG00000026895.7 ENSMUSG00000026895 ENSMUST00000070112 Ndufa8 protein_coding Interval_174517 chrX 155317958 155318212 + 0 NA Intergenic Intergenic -12336 ENSMUSG00000052157.4 ENSMUSG00000052157 ENSMUST00000144428 Gm650 processed_pseudogene Interval_50527 chr14 14666023 14667966 + 0 NA Intergenic Intergenic 7886 ENSMUSG00000114628.1 ENSMUSG00000114628 ENSMUST00000226083 Gm19018 processed_pseudogene Interval_69878 chr16 97819395 97819589 + 0 NA exon (ENSMUSG00000014039.18, exon 2 of 2) protein_coding-exon (ENSMUSG00000014039.18, exon 2 of 2) 18364 ENSMUSG00000116863.1 ENSMUSG00000116863 ENSMUST00000231602 Gm49592 processed_pseudogene Interval_5652 chr1 90571559 90571751 + 0 NA Intergenic Intergenic -31821 ENSMUSG00000034432.11 ENSMUSG00000034432 ENSMUST00000186882 Cops8 protein_coding Interval_87275 chr19 47337457 47339650 + 0 NA intron (ENSMUSG00000053617.12, intron 6 of 13) protein_coding-intron (ENSMUSG00000053617.12, intron 6 of 14) -64964 ENSMUSG00000098786.1 ENSMUSG00000098786 ENSMUST00000183658 Mir6995 miRNA Interval_124781 chr5 53954173 53954574 + 0 NA Intergenic Intergenic 35929 ENSMUSG00000107173.1 ENSMUSG00000107173 ENSMUST00000201049 Gm43266 TEC Interval_93955 chr2 79966110 79966424 + 0 NA intron (ENSMUSG00000059173.19, intron 1 of 15) protein_coding-intron (ENSMUSG00000059173.19, intron 2 of 15) 162672 ENSMUSG00000059173.19 ENSMUSG00000059173 ENSMUST00000125887 Pde1a protein_coding Interval_66566 chr16 35164233 35165231 + 0 NA intron (ENSMUSG00000022840.9, intron 1 of 20) protein_coding-intron (ENSMUSG00000022840.9, intron 1 of 20) 70191 ENSMUSG00000084581.1 ENSMUSG00000084581 ENSMUST00000122632 Gm25179 snRNA Interval_102283 chr3 20520511 20521116 + 0 NA Intergenic Intergenic -14605 ENSMUSG00000102636.1 ENSMUSG00000102636 ENSMUST00000195457 Gm31466 lincRNA Interval_2054 chr1 36139588 36139840 + 0 NA TTS (ENSMUSG00000037470.14) protein_coding-TTS (ENSMUSG00000037470.14) 4599 ENSMUSG00000098752.1 ENSMUSG00000098752 ENSMUST00000184790 Mir6897 miRNA Interval_149613 chr7 100039790 100040538 + 0 NA Intergenic Intergenic 33992 ENSMUSG00000030732.13 ENSMUSG00000030732 ENSMUST00000144808 Chrdl2 protein_coding Interval_25596 chr11 50090256 50091830 + 0 NA intron (ENSMUSG00000020376.17, intron 5 of 7) protein_coding-intron (ENSMUSG00000020376.17, intron 5 of 7) 21341 ENSMUSG00000065417.1 ENSMUSG00000065417 ENSMUST00000083483 Mir340 miRNA Interval_166499 chr9 60139443 60140066 + 0 NA intron (ENSMUSG00000032289.15, intron 6 of 16) protein_coding-intron (ENSMUSG00000032289.15, intron 1 of 11) -97575 ENSMUSG00000088090.1 ENSMUSG00000088090 ENSMUST00000157465 Gm23668 rRNA Interval_116705 chr4 116739056 116741165 + 0 NA intron (ENSMUSG00000033985.17, intron 2 of 10) protein_coding-intron (ENSMUSG00000033985.17, intron 1 of 10) 14211 ENSMUSG00000098491.1 ENSMUSG00000098491 ENSMUST00000183634 Gm27688 misc_RNA Interval_59881 chr15 60657622 60658038 + 0 NA Intergenic Intergenic -12513 ENSMUSG00000115504.1 ENSMUSG00000115504 ENSMUST00000226738 Gm48946 lincRNA Interval_171981 chr9 123158438 123159799 + 0 NA Intergenic Intergenic -3253 ENSMUSG00000077659.1 ENSMUSG00000077659 ENSMUST00000104471 Gm23323 snoRNA Interval_133973 chr6 17087670 17087914 + 0 NA intron (ENSMUSG00000054556.6, intron 1 of 2) protein_coding-intron (ENSMUSG00000029552.19, intron 4 of 8) 22632 ENSMUSG00000029552.19 ENSMUSG00000029552 ENSMUST00000076654 Tes protein_coding Interval_123384 chr5 32061996 32062274 + 0 NA intron (ENSMUSG00000052139.18, intron 2 of 2) protein_coding-intron (ENSMUSG00000052139.18, intron 13 of 13) -51272 ENSMUSG00000106894.1 ENSMUSG00000106894 ENSMUST00000201542 Gm17130 antisense Interval_136740 chr6 58830934 58832082 + 0 NA promoter-TSS (ENSMUSG00000029804.17) protein_coding-promoter-TSS (ENSMUSG00000029804.17) -49571 ENSMUSG00000108164.1 ENSMUSG00000108164 ENSMUST00000203675 Gm43899 processed_pseudogene Interval_96017 chr2 119203101 119204332 + 0 NA intron (ENSMUSG00000034278.3, intron 1 of 4) protein_coding-intron (ENSMUSG00000034278.3, intron 1 of 10) -7926 ENSMUSG00000068580.11 ENSMUSG00000068580 ENSMUST00000147584 Zfyve19 protein_coding Interval_161237 chr8 119007665 119008046 + 0 NA intron (ENSMUSG00000031841.19, intron 6 of 7) protein_coding-intron (ENSMUSG00000031841.19, intron 6 of 13) -143610 ENSMUSG00000031841.19 ENSMUSG00000031841 ENSMUST00000151842 Cdh13 protein_coding Interval_107446 chr3 107759639 107760786 + 0 NA promoter-TSS (ENSMUSG00000014599.10) protein_coding-promoter-TSS (ENSMUSG00000014599.10) -9471 ENSMUSG00000014599.10 ENSMUSG00000014599 ENSMUST00000153114 Csf1 protein_coding Interval_131728 chr5 139535493 139536786 + 0 NA intron (ENSMUSG00000106056.1, intron 2 of 3) lincRNA-intron (ENSMUSG00000106056.1, intron 2 of 3) -7759 ENSMUSG00000029546.12 ENSMUSG00000029546 ENSMUST00000174792 Uncx protein_coding Interval_59 GL456212.1 107387 107780 + 0 NA NA NA NA NA Interval_30898 chr11 97138103 97139467 + 0 NA exon (ENSMUSG00000038517.15, exon 8 of 9) protein_coding-exon (ENSMUSG00000038517.15, exon 8 of 9) 7634 ENSMUSG00000099286.1 ENSMUSG00000099286 ENSMUST00000183796 Mir7235 miRNA Interval_157230 chr8 68254502 68254864 + 0 NA Intergenic Intergenic -27624 ENSMUSG00000053886.4 ENSMUSG00000053886 ENSMUST00000212166 Sh2d4a protein_coding Interval_108776 chr3 131208040 131209118 + 0 NA intron (ENSMUSG00000027985.14, intron 11 of 11) protein_coding-intron (ENSMUSG00000027985.14, intron 11 of 11) 63445 ENSMUSG00000027984.8 ENSMUSG00000027984 ENSMUST00000152427 Hadh protein_coding Interval_125196 chr5 65265325 65265537 + 0 NA intron (ENSMUSG00000029191.16, intron 4 of 4) protein_coding-intron (ENSMUSG00000029191.16, intron 23 of 24) 8236 ENSMUSG00000029191.16 ENSMUSG00000029191 ENSMUST00000203644 Rfc1 protein_coding Interval_126839 chr5 94006992 94007708 + 0 NA Intergenic Intergenic 10869 ENSMUSG00000106916.1 ENSMUSG00000106916 ENSMUST00000200804 Gm3089 unprocessed_pseudogene Interval_43395 chr13 30026799 30027573 + 0 NA Intergenic Intergenic -31491 ENSMUSG00000085188.1 ENSMUSG00000085188 ENSMUST00000139576 Gm11368 lincRNA Interval_105859 chr3 89784741 89786018 + 0 NA TTS (ENSMUSG00000118654.1) unitary_pseudogene-TTS (ENSMUSG00000118654.1) 931 ENSMUSG00000118654.1 ENSMUSG00000118654 ENSMUST00000239422 AC102392.1 unitary_pseudogene Interval_32555 chr11 108553196 108553594 + 0 NA intron (ENSMUSG00000020728.17, intron 15 of 24) protein_coding-intron (ENSMUSG00000020728.17, intron 18 of 27) -19731 ENSMUSG00000086761.1 ENSMUSG00000086761 ENSMUST00000137907 Cep112os1 antisense Interval_111116 chr4 12171066 12172313 + 0 NA promoter-TSS (ENSMUSG00000028218.19) protein_coding-promoter-TSS (ENSMUSG00000028218.19) 326 ENSMUSG00000028218.19 ENSMUSG00000028218 ENSMUST00000152219 Fam92a protein_coding Interval_115965 chr4 106638683 106640000 + 0 NA exon (ENSMUSG00000034919.2, exon 7 of 7) protein_coding-exon (ENSMUSG00000034919.2, exon 7 of 7) 3364 ENSMUSG00000034919.2 ENSMUSG00000034919 ENSMUST00000136505 Ttc22 protein_coding Interval_162143 chr8 125485550 125487294 + 0 NA intron (ENSMUSG00000001995.9, intron 3 of 22) protein_coding-intron (ENSMUSG00000001995.9, intron 1 of 20) 83386 ENSMUSG00000001995.9 ENSMUSG00000001995 ENSMUST00000212604 Sipa1l2 protein_coding Interval_165177 chr9 45022787 45023627 + 0 NA Intergenic Intergenic -13585 ENSMUSG00000032093.7 ENSMUSG00000032093 ENSMUST00000217486 Cd3e protein_coding Interval_101511 chr3 3312931 3313473 + 0 NA Intergenic Intergenic -46175 ENSMUSG00000103028.1 ENSMUSG00000103028 ENSMUST00000195392 Gm8747 processed_pseudogene Interval_66020 chr16 30990811 30991082 + 0 NA intron (ENSMUSG00000047434.14, intron 3 of 3) protein_coding-intron (ENSMUSG00000047434.14, intron 3 of 3) -17428 ENSMUSG00000087605.1 ENSMUSG00000087605 ENSMUST00000123905 Gm15742 sense_intronic Interval_50969 chr14 21410589 21410860 + 0 NA intron (ENSMUSG00000039197.10, intron 9 of 10) protein_coding-intron (ENSMUSG00000039197.10, intron 9 of 10) -39750 ENSMUSG00000088873.1 ENSMUSG00000088873 ENSMUST00000158248 Gm25864 snRNA Interval_131998 chr5 142113764 142114703 + 0 NA intron (ENSMUSG00000039683.16, intron 28 of 44) protein_coding-intron (ENSMUSG00000039683.16, intron 24 of 40) -168873 ENSMUSG00000097947.1 ENSMUSG00000097947 ENSMUST00000182990 Gm26970 processed_pseudogene Interval_174205 chrX 139586795 139587367 + 0 NA intron (ENSMUSG00000031438.11, intron 1 of 6) protein_coding-intron (ENSMUSG00000031438.11, intron 1 of 6) -24286 ENSMUSG00000031438.11 ENSMUSG00000031438 ENSMUST00000113029 Rnf128 protein_coding Interval_159721 chr8 99280355 99282080 + 0 NA intron (ENSMUSG00000036510.17, intron 2 of 12) protein_coding-intron (ENSMUSG00000036510.17, intron 2 of 12) -133128 ENSMUSG00000086842.2 ENSMUSG00000086842 ENSMUST00000137501 Gm15681 processed_pseudogene Interval_3709 chr1 61513765 61515379 + 0 NA Intergenic Intergenic -31310 ENSMUSG00000102168.1 ENSMUSG00000102168 ENSMUST00000194422 Gm36943 TEC Interval_73308 chr17 36116462 36116887 + 0 NA TTS (ENSMUSG00000079491.9) polymorphic_pseudogene-TTS (ENSMUSG00000079491.9) 4761 ENSMUSG00000079491.9 ENSMUSG00000079491 ENSMUST00000174382 H2-T10 polymorphic_pseudogene Interval_168087 chr9 76122794 76123812 + 0 NA intron (ENSMUSG00000007908.14, intron 4 of 5) protein_coding-intron (ENSMUSG00000007908.14, intron 7 of 8) 55854 ENSMUSG00000103354.1 ENSMUSG00000103354 ENSMUST00000194758 Gm38083 TEC Interval_169522 chr9 98842178 98843327 + 0 NA exon (ENSMUSG00000091080.2, exon 1 of 1) protein_coding-exon (ENSMUSG00000091080.2, exon 1 of 1) 249 ENSMUSG00000091080.2 ENSMUSG00000091080 ENSMUST00000170349 Prr23a1 protein_coding Interval_161856 chr8 123234816 123236688 + 0 NA exon (ENSMUSG00000033594.11, exon 2 of 3) protein_coding-exon (ENSMUSG00000033594.11, exon 2 of 3) 474 ENSMUSG00000033594.11 ENSMUSG00000033594 ENSMUST00000212818 Spata2l protein_coding Interval_152649 chr7 135698325 135699000 + 0 NA exon (ENSMUSG00000031004.8, exon 12 of 14) protein_coding-exon (ENSMUSG00000031004.8, exon 12 of 14) -10532 ENSMUSG00000109910.1 ENSMUSG00000109910 ENSMUST00000211437 Gm45240 TEC Interval_30761 chr11 96320822 96321015 + 0 NA exon (ENSMUSG00000038692.8, exon 2 of 2) protein_coding-exon (ENSMUSG00000038692.8, exon 2 of 2) 2651 ENSMUSG00000038692.8 ENSMUSG00000038692 ENSMUST00000049241 Hoxb4 protein_coding Interval_18541 chr10 87230101 87230760 + 0 NA promoter-TSS (ENSMUSG00000112213.1) lincRNA-promoter-TSS (ENSMUSG00000112213.1) -330 ENSMUSG00000112213.1 ENSMUSG00000112213 ENSMUST00000218226 4930555G07Rik lincRNA Interval_172730 chrX 48016785 48017093 + 0 NA Intergenic Intergenic 17914 ENSMUSG00000037010.7 ENSMUSG00000037010 ENSMUST00000039026 Apln protein_coding Interval_63507 chr15 101529189 101529590 + 0 NA intron (ENSMUSG00000044294.8, intron 2 of 3) protein_coding-intron (ENSMUSG00000044294.8, intron 4 of 8) 952 ENSMUSG00000044294.8 ENSMUSG00000044294 ENSMUST00000229893 Krt84 protein_coding Interval_169204 chr9 95483223 95483711 + 0 NA intron (ENSMUSG00000032407.14, intron 16 of 27) protein_coding-intron (ENSMUSG00000032407.14, intron 15 of 26) 28418 ENSMUSG00000032407.14 ENSMUSG00000032407 ENSMUST00000188017 U2surp protein_coding Interval_128762 chr5 115134334 115135423 + 0 NA promoter-TSS (ENSMUSG00000046562.5) protein_coding-promoter-TSS (ENSMUSG00000046562.5) 47 ENSMUSG00000046562.5 ENSMUSG00000046562 ENSMUST00000153403 Unc119b protein_coding Interval_129917 chr5 123051702 123052254 + 0 NA Intergenic Intergenic -4973 ENSMUSG00000029477.14 ENSMUSG00000029477 ENSMUST00000145257 Morn3 protein_coding Interval_96016 chr2 119195764 119196941 + 0 NA intron (ENSMUSG00000034278.3, intron 1 of 4) protein_coding-intron (ENSMUSG00000034278.3, intron 1 of 10) 8835 ENSMUSG00000081572.3 ENSMUSG00000081572 ENSMUST00000122061 Gm14138 processed_pseudogene Interval_16533 chr10 63410208 63411313 + 0 NA TTS (ENSMUSG00000036764.12) protein_coding-TTS (ENSMUSG00000036764.12) -2239 ENSMUSG00000112572.1 ENSMUSG00000112572 ENSMUST00000218466 Gm7530 processed_pseudogene Interval_140926 chr6 122784867 122786714 + 0 NA intron (ENSMUSG00000003153.10, intron 2 of 4) protein_coding-intron (ENSMUSG00000003153.10, intron 2 of 4) -5833 ENSMUSG00000003153.10 ENSMUSG00000003153 ENSMUST00000168801 Slc2a3 protein_coding Interval_112941 chr4 46226934 46227874 + 0 NA Intergenic Intergenic 16486 ENSMUSG00000082194.3 ENSMUSG00000082194 ENSMUST00000121512 Gm12444 processed_pseudogene Interval_146653 chr7 49178186 49178482 + 0 NA intron (ENSMUSG00000052512.17, intron 2 of 39) protein_coding-intron (ENSMUSG00000052512.17, intron 2 of 39) -17207 ENSMUSG00000103834.1 ENSMUSG00000103834 ENSMUST00000195677 Gm37613 TEC Interval_135287 chr6 38065749 38066739 + 0 NA intron (ENSMUSG00000038600.12, intron 15 of 21) protein_coding-intron (ENSMUSG00000038600.12, intron 14 of 20) 17128 ENSMUSG00000038600.12 ENSMUSG00000038600 ENSMUST00000130816 Atp6v0a4 protein_coding Interval_27454 chr11 67926826 67927323 + 0 NA intron (ENSMUSG00000020904.11, intron 2 of 3) protein_coding-intron (ENSMUSG00000020904.11, intron 12 of 13) 5570 ENSMUSG00000055134.5 ENSMUSG00000055134 ENSMUST00000068548 9130017K11Rik processed_transcript Interval_41677 chr12 117660297 117660879 + 0 NA intron (ENSMUSG00000041992.9, intron 1 of 17) protein_coding-intron (ENSMUSG00000041992.9, intron 11 of 27) -28368 ENSMUSG00000041992.9 ENSMUSG00000041992 ENSMUST00000222035 Rapgef5 protein_coding Interval_96645 chr2 126765784 126766759 + 0 NA intron (ENSMUSG00000027364.14, intron 2 of 2) protein_coding-intron (ENSMUSG00000027364.14, intron 6 of 6) 17187 ENSMUSG00000027364.14 ENSMUSG00000027364 ENSMUST00000151140 Usp50 protein_coding Interval_135803 chr6 47465950 47466246 + 0 NA intron (ENSMUSG00000029686.15, intron 1 of 1) protein_coding-intron (ENSMUSG00000029686.15, intron 1 of 21) -11778 ENSMUSG00000052241.3 ENSMUSG00000052241 ENSMUST00000064013 A930035D04Rik pseudogene Interval_109395 chr3 141616450 141616902 + 0 NA intron (ENSMUSG00000059921.15, intron 1 of 15) protein_coding-intron (ENSMUSG00000059921.15, intron 1 of 16) 66224 ENSMUSG00000089924.1 ENSMUSG00000089924 ENSMUST00000160604 Gm15689 antisense Interval_164499 chr9 37492308 37492614 + 0 NA intron (ENSMUSG00000042138.9, intron 2 of 2) protein_coding-intron (ENSMUSG00000042138.9, intron 1 of 3) 3140 ENSMUSG00000042138.9 ENSMUSG00000042138 ENSMUST00000213411 Msantd2 protein_coding Interval_44789 chr13 48659829 48660191 + 0 NA Intergenic Intergenic -2988 ENSMUSG00000021381.4 ENSMUSG00000021381 ENSMUST00000021813 Barx1 protein_coding Interval_49695 chr13 114050719 114051185 + 0 NA intron (ENSMUSG00000042348.10, intron 5 of 5) protein_coding-intron (ENSMUSG00000042348.10, intron 4 of 4) 69464 ENSMUSG00000114696.1 ENSMUSG00000114696 ENSMUST00000223997 Gm47479 TEC Interval_96373 chr2 122045191 122045379 + 0 NA intron (ENSMUSG00000027236.8, intron 4 of 7) protein_coding-intron (ENSMUSG00000027236.8, intron 4 of 7) 16633 ENSMUSG00000027236.8 ENSMUSG00000027236 ENSMUST00000142747 Eif3j1 protein_coding Interval_56264 chr14 115393002 115393323 + 0 NA intron (ENSMUSG00000022112.14, intron 3 of 7) protein_coding-intron (ENSMUSG00000022112.14, intron 3 of 7) 16390 ENSMUSG00000093551.1 ENSMUSG00000093551 ENSMUST00000176582 4930505G20Rik processed_transcript Interval_97931 chr2 145865531 145865798 + 0 NA intron (ENSMUSG00000001768.16, intron 1 of 2) protein_coding-intron (ENSMUSG00000001768.16, intron 9 of 12) -12622 ENSMUSG00000092758.1 ENSMUSG00000092758 ENSMUST00000175017 Gm25026 miRNA Interval_101140 chr2 178417054 178417261 + 0 NA intron (ENSMUSG00000070476.10, intron 2 of 3) protein_coding-intron (ENSMUSG00000070476.10, intron 2 of 3) 2575 ENSMUSG00000070476.10 ENSMUSG00000070476 ENSMUST00000129003 Fam217b protein_coding Interval_55969 chr14 103483980 103485096 + 0 NA intron (ENSMUSG00000115762.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000115762.1, intron 1 of 2) 20487 ENSMUSG00000115762.1 ENSMUSG00000115762 ENSMUST00000228400 Gm34907 lincRNA Interval_99911 chr2 165757832 165758826 + 0 NA intron (ENSMUSG00000017897.18, intron 10 of 15) protein_coding-intron (ENSMUSG00000017897.18, intron 10 of 15) -91472 ENSMUSG00000081758.1 ENSMUSG00000081758 ENSMUST00000118200 Gm11460 processed_pseudogene Interval_33043 chr11 113834797 113835202 + 0 NA exon (ENSMUSG00000041592.16, exon 25 of 45) protein_coding-exon (ENSMUSG00000041592.16, exon 25 of 45) -24576 ENSMUSG00000041592.16 ENSMUSG00000041592 ENSMUST00000144301 Sdk2 protein_coding Interval_92526 chr2 60305031 60305249 + 0 NA intron (ENSMUSG00000026980.15, intron 31 of 34) protein_coding-intron (ENSMUSG00000026980.15, intron 31 of 34) -20652 ENSMUSG00000060703.12 ENSMUSG00000060703 ENSMUST00000074606 Cd302 protein_coding Interval_121761 chr5 7208749 7208989 + 0 NA intron (ENSMUSG00000092094.5, intron 1 of 3) protein_coding-intron (ENSMUSG00000092094.5, intron 1 of 3) 26968 ENSMUSG00000105711.1 ENSMUSG00000105711 ENSMUST00000200110 Gm42598 TEC Interval_75132 chr17 63812832 63814457 + 0 NA Intergenic Intergenic -49418 ENSMUSG00000000127.15 ENSMUSG00000000127 ENSMUST00000038080 Fer protein_coding Interval_98905 chr2 155922509 155922959 + 0 NA intron (ENSMUSG00000005882.18, intron 1 of 6) protein_coding-intron (ENSMUSG00000005882.18, intron 1 of 6) 7542 ENSMUSG00000005882.18 ENSMUSG00000005882 ENSMUST00000142655 Uqcc1 protein_coding Interval_65711 chr16 25817611 25818524 + 0 NA intron (ENSMUSG00000022510.14, intron 1 of 11) protein_coding-intron (ENSMUSG00000022510.14, intron 1 of 11) 91371 ENSMUSG00000098103.1 ENSMUSG00000098103 ENSMUST00000182783 Gm27005 processed_pseudogene Interval_12680 chr10 4295698 4297069 + 0 NA intron (ENSMUSG00000038587.10, intron 1 of 3) protein_coding-intron (ENSMUSG00000038587.10, intron 1 of 3) -38162 ENSMUSG00000038587.10 ENSMUSG00000038587 ENSMUST00000215696 Akap12 protein_coding Interval_132643 chr5 146916368 146917132 + 0 NA Intergenic Intergenic -31907 ENSMUSG00000016503.18 ENSMUSG00000016503 ENSMUST00000133296 Gtf3a protein_coding Interval_168546 chr9 83440538 83441607 + 0 NA promoter-TSS (ENSMUSG00000032258.15) protein_coding-promoter-TSS (ENSMUSG00000032258.15) -6487 ENSMUSG00000103044.1 ENSMUSG00000103044 ENSMUST00000193663 Gm37307 TEC Interval_18998 chr10 93655315 93656068 + 0 NA intron (ENSMUSG00000020019.4, intron 2 of 9) protein_coding-intron (ENSMUSG00000020019.4, intron 2 of 9) 10155 ENSMUSG00000090159.1 ENSMUSG00000090159 ENSMUST00000160295 Gm8580 processed_pseudogene Interval_52443 chr14 46426168 46426425 + 0 NA Intergenic Intergenic -10559 ENSMUSG00000086168.1 ENSMUSG00000086168 ENSMUST00000144439 Gm15221 lincRNA Interval_156697 chr8 57429179 57430233 + 0 NA Intergenic Intergenic -26217 ENSMUSG00000031610.3 ENSMUSG00000031610 ENSMUST00000034023 Scrg1 protein_coding Interval_50984 chr14 21489381 21490118 + 0 NA intron (ENSMUSG00000021767.19, intron 1 of 5) protein_coding-intron (ENSMUSG00000021767.19, intron 1 of 1) -16389 ENSMUSG00000114875.1 ENSMUSG00000114875 ENSMUST00000225719 Gm30363 processed_transcript Interval_99506 chr2 162784725 162784938 + 0 NA Intergenic Intergenic -20759 ENSMUSG00000082296.1 ENSMUSG00000082296 ENSMUST00000121144 Gm11450 processed_pseudogene Interval_123067 chr5 29385632 29385839 + 0 NA intron (ENSMUSG00000097561.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000097561.1, intron 1 of 1) 7036 ENSMUSG00000097561.1 ENSMUSG00000097561 ENSMUST00000181005 4632411P08Rik lincRNA Interval_58310 chr15 32228580 32229075 + 0 NA Intergenic Intergenic 2442 ENSMUSG00000107924.1 ENSMUSG00000107924 ENSMUST00000203902 4930518I17Rik lincRNA Interval_23511 chr11 23044926 23045228 + 0 NA Intergenic Intergenic 18155 ENSMUSG00000088010.1 ENSMUSG00000088010 ENSMUST00000157385 Gm23740 rRNA Interval_93832 chr2 77309206 77309799 + 0 NA Intergenic Intergenic -5249 ENSMUSG00000085277.1 ENSMUSG00000085277 ENSMUST00000144043 Gm13943 lincRNA Interval_157127 chr8 65709917 65712271 + 0 NA intron (ENSMUSG00000036469.16, intron 1 of 7) protein_coding-intron (ENSMUSG00000036469.16, intron 1 of 7) -43393 ENSMUSG00000064763.1 ENSMUSG00000064763 ENSMUST00000082829 Gm23515 snRNA Interval_27127 chr11 63168679 63169174 + 0 NA Intergenic Intergenic -4988 ENSMUSG00000085532.1 ENSMUSG00000085532 ENSMUST00000123420 B430319H21Rik lincRNA Interval_169219 chr9 95612057 95613140 + 0 NA Intergenic Intergenic 9821 ENSMUSG00000101936.1 ENSMUSG00000101936 ENSMUST00000190143 Gm28164 processed_pseudogene Interval_1239 chr1 17931672 17932973 + 0 NA Intergenic Intergenic -14719 ENSMUSG00000100554.1 ENSMUSG00000100554 ENSMUST00000190885 Gm7690 processed_pseudogene Interval_79332 chr18 30627769 30628111 + 0 NA Intergenic Intergenic -19050 ENSMUSG00000117526.1 ENSMUSG00000117526 ENSMUST00000235078 Gm41780 processed_pseudogene Interval_65416 chr16 22219185 22219445 + 0 NA Intergenic Intergenic -4929 ENSMUSG00000064686.1 ENSMUSG00000064686 ENSMUST00000082752 Gm25810 snRNA Interval_78502 chr18 13742044 13742905 + 0 NA intron (ENSMUSG00000024420.9, intron 2 of 5) protein_coding-intron (ENSMUSG00000024420.9, intron 5 of 7) 133852 ENSMUSG00000024420.9 ENSMUSG00000024420 ENSMUST00000234025 Zfp521 protein_coding Interval_92635 chr2 61752554 61753442 + 0 NA intron (ENSMUSG00000026914.15, intron 3 of 6) protein_coding-intron (ENSMUSG00000026914.15, intron 3 of 11) 9471 ENSMUSG00000092660.1 ENSMUSG00000092660 ENSMUST00000174919 Gm22403 miRNA Interval_5230 chr1 86597363 86597595 + 0 NA intron (ENSMUSG00000026240.12, intron 1 of 2) protein_coding-intron (ENSMUSG00000026240.12, intron 4 of 6) 14541 ENSMUSG00000026240.12 ENSMUSG00000026240 ENSMUST00000127219 Cops7b protein_coding Interval_134890 chr6 33247198 33249605 + 0 NA promoter-TSS (ENSMUSG00000029763.17) protein_coding-promoter-TSS (ENSMUSG00000029763.17) -302 ENSMUSG00000082217.1 ENSMUSG00000082217 ENSMUST00000122048 Gm1401 processed_pseudogene Interval_109550 chr3 144397885 144398610 + 0 NA Intergenic Intergenic 29425 ENSMUSG00000106416.1 ENSMUSG00000106416 ENSMUST00000198953 Gm5857 processed_pseudogene Interval_56297 chr14 116869014 116870331 + 0 NA Intergenic Intergenic -55859 ENSMUSG00000058571.11 ENSMUSG00000058571 ENSMUST00000078849 Gpc6 protein_coding Interval_56634 chr14 120991075 120991385 + 0 NA Intergenic Intergenic 75383 ENSMUSG00000030662.10 ENSMUSG00000030662 ENSMUST00000228277 Ipo5 protein_coding Interval_83509 chr18 88552490 88553078 + 0 NA Intergenic Intergenic -56618 ENSMUSG00000118352.1 ENSMUSG00000118352 ENSMUST00000237266 Gm50401 lincRNA Interval_43505 chr13 32052383 32052589 + 0 NA intron (ENSMUSG00000038372.14, intron 7 of 10) protein_coding-intron (ENSMUSG00000038372.14, intron 7 of 10) 46689 ENSMUSG00000112944.1 ENSMUSG00000112944 ENSMUST00000222438 Gm48885 TEC Interval_52026 chr14 34688271 34688846 + 0 NA intron (ENSMUSG00000041408.18, intron 2 of 19) protein_coding-intron (ENSMUSG00000041408.18, intron 2 of 18) -14795 ENSMUSG00000115007.1 ENSMUSG00000115007 ENSMUST00000228874 5830448L01Rik bidirectional_promoter_lncRNA Interval_135142 chr6 36691539 36691853 + 0 NA Intergenic Intergenic -7701 ENSMUSG00000080336.1 ENSMUSG00000080336 ENSMUST00000116686 Gm25111 miRNA Interval_36715 chr12 52408001 52408564 + 0 NA intron (ENSMUSG00000112139.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000112139.1, intron 1 of 1) 39843 ENSMUSG00000112139.1 ENSMUSG00000112139 ENSMUST00000218097 Gm47431 lincRNA Interval_93163 chr2 70778453 70778774 + 0 NA intron (ENSMUSG00000041997.16, intron 1 of 7) protein_coding-intron (ENSMUSG00000041997.16, intron 2 of 19) -60709 ENSMUSG00000041997.16 ENSMUSG00000041997 ENSMUST00000124629 Tlk1 protein_coding Interval_74461 chr17 51159156 51159545 + 0 NA promoter-TSS (ENSMUSG00000023923.10) protein_coding-promoter-TSS (ENSMUSG00000023923.10) 19944 ENSMUSG00000023923.10 ENSMUSG00000023923 ENSMUST00000225473 Tbc1d5 protein_coding Interval_154258 chr8 13869301 13870624 + 0 NA intron (ENSMUSG00000047710.8, intron 1 of 1) protein_coding-intron (ENSMUSG00000047710.8, intron 1 of 1) 258 ENSMUSG00000047710.8 ENSMUSG00000047710 ENSMUST00000128557 Champ1 protein_coding Interval_33031 chr11 113778798 113780308 + 0 NA exon (ENSMUSG00000041592.16, exon 45 of 45) protein_coding-exon (ENSMUSG00000041592.16, exon 45 of 45) 22851 ENSMUSG00000083090.1 ENSMUSG00000083090 ENSMUST00000121468 Gm11736 processed_pseudogene Interval_89201 chr2 18015592 18015861 + 0 NA Intergenic Intergenic 13145 ENSMUSG00000054057.2 ENSMUSG00000054057 ENSMUST00000151857 A930004D18Rik protein_coding Interval_17120 chr10 71441333 71442100 + 0 NA Intergenic Intergenic -41365 ENSMUSG00000112608.1 ENSMUSG00000112608 ENSMUST00000217831 Gm46233 processed_pseudogene Interval_31017 chr11 97728809 97729299 + 0 NA intron (ENSMUSG00000018547.8, intron 3 of 9) protein_coding-intron (ENSMUSG00000018547.8, intron 3 of 9) -2311 ENSMUSG00000018547.8 ENSMUSG00000018547 ENSMUST00000144012 Pip4k2b protein_coding Interval_131492 chr5 137542685 137542921 + 0 NA Intergenic Intergenic -9599 ENSMUSG00000029713.15 ENSMUSG00000029713 ENSMUST00000140139 Gnb2 protein_coding Interval_39435 chr12 87387594 87388886 + 0 NA promoter-TSS (ENSMUSG00000021036.10) protein_coding-promoter-TSS (ENSMUSG00000021036.10) -6204 ENSMUSG00000113767.1 ENSMUSG00000113767 ENSMUST00000221716 Gm48873 unprocessed_pseudogene Interval_149699 chr7 100731896 100732152 + 0 NA intron (ENSMUSG00000029461.17, intron 2 of 8) protein_coding-intron (ENSMUSG00000029461.17, intron 2 of 8) 6604 ENSMUSG00000109035.1 ENSMUSG00000109035 ENSMUST00000207122 Gm45209 processed_pseudogene Interval_155719 chr8 36437102 36437746 + 0 NA Intergenic Intergenic -12956 ENSMUSG00000109977.1 ENSMUSG00000109977 ENSMUST00000209790 Gm19140 processed_pseudogene Interval_102395 chr3 23469048 23469879 + 0 NA intron (ENSMUSG00000102203.1, intron 2 of 2) lincRNA-intron (ENSMUSG00000102203.1, intron 2 of 2) 8413 ENSMUSG00000102203.1 ENSMUSG00000102203 ENSMUST00000194267 4930412E21Rik lincRNA Interval_147177 chr7 64150394 64151789 + 0 NA Intergenic Intergenic 51433 ENSMUSG00000108645.1 ENSMUSG00000108645 ENSMUST00000206473 Gm44722 TEC Interval_105002 chr3 79628291 79629803 + 0 NA promoter-TSS (ENSMUSG00000027809.14) protein_coding-promoter-TSS (ENSMUSG00000027809.14) -32 ENSMUSG00000027811.9 ENSMUSG00000027811 ENSMUST00000029388 4930579G24Rik protein_coding Interval_145616 chr7 36045931 36046601 + 0 NA Intergenic Intergenic -51112 ENSMUSG00000108711.1 ENSMUSG00000108711 ENSMUST00000205504 Gm38991 lincRNA Interval_122423 chr5 22518342 22519713 + 0 NA exon (ENSMUSG00000029012.11, exon 1 of 1) protein_coding-exon (ENSMUSG00000029012.11, exon 1 of 1) 3639 ENSMUSG00000029012.11 ENSMUSG00000029012 ENSMUST00000138248 Orc5 protein_coding Interval_7234 chr1 128089435 128089935 + 0 NA promoter-TSS (ENSMUSG00000102782.1) TEC-promoter-TSS (ENSMUSG00000102782.1) -354 ENSMUSG00000102782.1 ENSMUSG00000102782 ENSMUST00000194969 Gm37625 TEC Interval_25049 chr11 43512465 43513475 + 0 NA Intergenic Intergenic -16276 ENSMUSG00000044707.7 ENSMUSG00000044707 ENSMUST00000152153 Ccnjl protein_coding Interval_7564 chr1 132246184 132246401 + 0 NA intron (ENSMUSG00000079330.9, intron 4 of 4) protein_coding-intron (ENSMUSG00000079330.9, intron 3 of 3) -16525 ENSMUSG00000066936.4 ENSMUSG00000066936 ENSMUST00000086544 Gm10188 protein_coding Interval_72396 chr17 29595742 29596928 + 0 NA promoter-TSS (ENSMUSG00000089900.2) antisense-promoter-TSS (ENSMUSG00000089900.2) -30 ENSMUSG00000089900.2 ENSMUSG00000089900 ENSMUST00000159875 Tbc1d22bos antisense Interval_119668 chr4 139100353 139101140 + 0 NA Intergenic Intergenic -8640 ENSMUSG00000041120.6 ENSMUSG00000041120 ENSMUST00000132900 Nbl1 protein_coding Interval_19407 chr10 98985422 98985666 + 0 NA promoter-TSS (ENSMUSG00000019943.10) protein_coding-promoter-TSS (ENSMUSG00000019943.10) -5336 ENSMUSG00000019943.10 ENSMUSG00000019943 ENSMUST00000218419 Atp2b1 protein_coding Interval_21860 chr11 4802634 4803897 + 0 NA intron (ENSMUSG00000009073.16, intron 1 of 5) protein_coding-intron (ENSMUSG00000009073.16, intron 7 of 16) 45860 ENSMUSG00000009073.16 ENSMUSG00000009073 ENSMUST00000172305 Nf2 protein_coding Interval_86796 chr19 43924375 43924932 + 0 NA TTS (ENSMUSG00000025195.9) protein_coding-TTS (ENSMUSG00000025195.9) 4180 ENSMUSG00000118000.1 ENSMUSG00000118000 ENSMUST00000235838 Gm50217 lincRNA Interval_88635 chr2 8010779 8011252 + 0 NA Intergenic Intergenic 136850 ENSMUSG00000083269.1 ENSMUSG00000083269 ENSMUST00000118295 Gm13254 processed_pseudogene Interval_96125 chr2 119924588 119925333 + 0 NA TTS (ENSMUSG00000033943.15) protein_coding-TTS (ENSMUSG00000033943.15) 27655 ENSMUSG00000033943.15 ENSMUSG00000033943 ENSMUST00000131396 Mga protein_coding Interval_117673 chr4 125489774 125491782 + 0 NA promoter-TSS (ENSMUSG00000001985.9) protein_coding-promoter-TSS (ENSMUSG00000001985.9) 78 ENSMUSG00000001985.9 ENSMUSG00000001985 ENSMUST00000030676 Grik3 protein_coding Interval_16644 chr10 66787281 66788156 + 0 NA Intergenic Intergenic -22122 ENSMUSG00000112425.1 ENSMUSG00000112425 ENSMUST00000220426 Gm47896 lincRNA Interval_141213 chr6 125635268 125635613 + 0 NA exon (ENSMUSG00000001930.17, exon 1 of 2) protein_coding-exon (ENSMUSG00000001930.17, exon 1 of 2) -75186 ENSMUSG00000038115.16 ENSMUSG00000038115 ENSMUST00000159984 Ano2 protein_coding Interval_19245 chr10 95737976 95739318 + 0 NA intron (ENSMUSG00000112188.1, intron 2 of 2) lincRNA-intron (ENSMUSG00000112188.1, intron 2 of 2) 7420 ENSMUSG00000112188.1 ENSMUSG00000112188 ENSMUST00000219583 Gm47708 lincRNA Interval_156363 chr8 47713256 47714703 + 0 NA promoter-TSS (ENSMUSG00000038069.6) protein_coding-promoter-TSS (ENSMUSG00000038069.6) -47 ENSMUSG00000038069.6 ENSMUSG00000038069 ENSMUST00000212658 Cdkn2aip protein_coding Interval_30202 chr11 90530286 90530502 + 0 NA intron (ENSMUSG00000020546.14, intron 16 of 17) protein_coding-intron (ENSMUSG00000020546.14, intron 4 of 4) 8752 ENSMUSG00000081043.1 ENSMUSG00000081043 ENSMUST00000119669 Gm11512 processed_pseudogene Interval_13277 chr10 13982489 13983451 + 0 NA intron (ENSMUSG00000015501.10, intron 1 of 1) protein_coding-intron (ENSMUSG00000015501.10, intron 1 of 8) 15946 ENSMUSG00000015501.10 ENSMUSG00000015501 ENSMUST00000191464 Hivep2 protein_coding Interval_34230 chr11 121457829 121458875 + 0 NA intron (ENSMUSG00000039230.14, intron 2 of 38) protein_coding-intron (ENSMUSG00000039230.14, intron 2 of 38) 23384 ENSMUSG00000025175.12 ENSMUSG00000025175 ENSMUST00000103014 Fn3k protein_coding Interval_129981 chr5 123497516 123498439 + 0 NA intron (ENSMUSG00000063409.12, intron 4 of 11) protein_coding-intron (ENSMUSG00000063409.12, intron 4 of 11) 8672 ENSMUSG00000063409.12 ENSMUSG00000063409 ENSMUST00000121444 Lrrc43 protein_coding Interval_127734 chr5 107200699 107202882 + 0 NA intron (ENSMUSG00000029287.14, intron 3 of 6) protein_coding-intron (ENSMUSG00000029287.14, intron 3 of 16) -39833 ENSMUSG00000084218.1 ENSMUSG00000084218 ENSMUST00000118220 Gm8145 processed_pseudogene Interval_118877 chr4 134210278 134210676 + 0 NA Intergenic Intergenic -7473 ENSMUSG00000073747.2 ENSMUSG00000073747 ENSMUST00000097849 Zpld2 protein_coding Interval_99310 chr2 158849045 158850067 + 0 NA intron (ENSMUSG00000027655.14, intron 20 of 21) protein_coding-intron (ENSMUSG00000027655.14, intron 19 of 20) 22138 ENSMUSG00000027655.14 ENSMUSG00000027655 ENSMUST00000143195 Dhx35 protein_coding Interval_80061 chr18 37091641 37092092 + 0 NA exon (ENSMUSG00000103255.1, exon 1 of 4) protein_coding-exon (ENSMUSG00000103255.1, exon 1 of 4) 1853 ENSMUSG00000103255.1 ENSMUSG00000103255 ENSMUST00000007584 Pcdhac1 protein_coding Interval_83712 chr19 3890638 3891054 + 0 NA promoter-TSS (ENSMUSG00000024843.15) protein_coding-promoter-TSS (ENSMUSG00000024843.15) 15394 ENSMUSG00000001750.16 ENSMUSG00000001750 ENSMUST00000236590 Tcirg1 protein_coding Interval_69266 chr16 91796885 91797273 + 0 NA intron (ENSMUSG00000022957.20, intron 3 of 4) protein_coding-intron (ENSMUSG00000022957.20, intron 5 of 28) -68482 ENSMUSG00000058240.14 ENSMUSG00000058240 ENSMUST00000123751 Cryzl1 protein_coding Interval_80054 chr18 36973733 36976164 + 0 NA promoter-TSS (ENSMUSG00000103125.1) protein_coding-promoter-TSS (ENSMUSG00000103125.1) -993 ENSMUSG00000103125.1 ENSMUSG00000103125 ENSMUST00000193984 Gm37388 protein_coding Interval_159159 chr8 91196535 91197148 + 0 NA intron (ENSMUSG00000031667.16, intron 1 of 1) protein_coding-intron (ENSMUSG00000031667.16, intron 1 of 3) -11658 ENSMUSG00000089148.1 ENSMUSG00000089148 ENSMUST00000158523 Gm23408 misc_RNA Interval_6772 chr1 119390247 119390775 + 0 NA Intergenic Intergenic 31737 ENSMUSG00000037035.5 ENSMUSG00000037035 ENSMUST00000038765 Inhbb protein_coding Interval_49823 chr13 116562389 116562651 + 0 NA intron (ENSMUSG00000114731.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000114731.1, intron 1 of 1) 101071 ENSMUSG00000114347.1 ENSMUSG00000114347 ENSMUST00000225601 Gm47913 lincRNA Interval_90689 chr2 31914372 31915379 + 0 NA intron (ENSMUSG00000026840.14, intron 10 of 27) protein_coding-intron (ENSMUSG00000026840.14, intron 10 of 27) -22458 ENSMUSG00000086356.1 ENSMUSG00000086356 ENSMUST00000140104 Gm13441 antisense Interval_155394 chr8 33220115 33220886 + 0 NA Intergenic Intergenic -28204 ENSMUSG00000083557.1 ENSMUSG00000083557 ENSMUST00000119347 Gm6877 processed_pseudogene Interval_27494 chr11 68231653 68231983 + 0 NA intron (ENSMUSG00000020902.12, intron 6 of 7) protein_coding-intron (ENSMUSG00000020902.12, intron 5 of 6) 10926 ENSMUSG00000099174.1 ENSMUSG00000099174 ENSMUST00000183592 Mir6406 miRNA Interval_37417 chr12 68007656 68007914 + 0 NA Intergenic Intergenic 59252 ENSMUSG00000113526.1 ENSMUSG00000113526 ENSMUST00000220843 Gm47453 lincRNA Interval_105026 chr3 79878963 79879420 + 0 NA intron (ENSMUSG00000102191.1, intron 1 of 2) antisense-intron (ENSMUSG00000102191.1, intron 1 of 2) -6865 ENSMUSG00000027955.16 ENSMUSG00000027955 ENSMUST00000193204 Gask1b protein_coding Interval_75909 chr17 72934267 72934912 + 0 NA intron (ENSMUSG00000024063.13, intron 2 of 2) protein_coding-intron (ENSMUSG00000024063.13, intron 2 of 2) 13401 ENSMUSG00000024063.13 ENSMUSG00000024063 ENSMUST00000148556 Lbh protein_coding Interval_30781 chr11 96421971 96422185 + 0 NA Intergenic Intergenic 29966 ENSMUSG00000075587.5 ENSMUSG00000075587 ENSMUST00000117614 Gm11531 processed_pseudogene Interval_90824 chr2 32838442 32838831 + 0 NA intron (ENSMUSG00000026797.16, intron 1 of 19) protein_coding-intron (ENSMUSG00000026797.16, intron 1 of 18) 6647 ENSMUSG00000064652.1 ENSMUSG00000064652 ENSMUST00000082718 Gm24165 snoRNA Interval_18705 chr10 89470363 89472161 + 0 NA intron (ENSMUSG00000047638.15, intron 8 of 9) protein_coding-intron (ENSMUSG00000047638.15, intron 7 of 8) -37420 ENSMUSG00000074802.11 ENSMUSG00000074802 ENSMUST00000219073 Gas2l3 protein_coding Interval_12559 chr10 3156164 3156365 + 0 NA Intergenic Intergenic -15206 ENSMUSG00000111242.1 ENSMUSG00000111242 ENSMUST00000216363 Gm8155 processed_pseudogene Interval_49296 chr13 110392372 110392926 + 0 NA Intergenic Intergenic -3363 ENSMUSG00000021701.8 ENSMUSG00000021701 ENSMUST00000225156 Plk2 protein_coding Interval_49154 chr13 108711144 108711330 + 0 NA intron (ENSMUSG00000021699.17, intron 3 of 3) protein_coding-intron (ENSMUSG00000021699.17, intron 1 of 16) 40634 ENSMUSG00000059751.7 ENSMUSG00000059751 ENSMUST00000074680 Rps3a3 processed_pseudogene Interval_151182 chr7 119035284 119035601 + 0 NA Intergenic Intergenic -50798 ENSMUSG00000008734.9 ENSMUSG00000008734 ENSMUST00000207614 Gprc5b protein_coding Interval_37334 chr12 65184261 65184621 + 0 NA intron (ENSMUSG00000113228.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000113228.1, intron 1 of 1) 2061 ENSMUSG00000113228.1 ENSMUSG00000113228 ENSMUST00000221147 4930471E15Rik lincRNA Interval_119067 chr4 135309386 135310259 + 0 NA TTS (ENSMUSG00000085002.1) antisense-TTS (ENSMUSG00000085002.1) -1852 ENSMUSG00000082833.1 ENSMUSG00000082833 ENSMUST00000117408 Gm12982 processed_pseudogene Interval_65269 chr16 21156388 21156554 + 0 NA Intergenic Intergenic -2471 ENSMUSG00000090356.2 ENSMUSG00000090356 ENSMUST00000170665 Teddm3 protein_coding Interval_80082 chr18 37402366 37403292 + 0 NA exon (ENSMUSG00000051242.1, exon 1 of 1) protein_coding-exon (ENSMUSG00000051242.1, exon 1 of 1) 1974 ENSMUSG00000051242.1 ENSMUSG00000051242 ENSMUST00000057228 Pcdhb9 protein_coding Interval_103310 chr3 38456248 38456556 + 0 NA promoter-TSS (ENSMUSG00000044864.16) protein_coding-promoter-TSS (ENSMUSG00000044864.16) -12770 ENSMUSG00000105516.4 ENSMUSG00000105516 ENSMUST00000196546 Gm36823 lincRNA Interval_81616 chr18 62171276 62171767 + 0 NA Intergenic Intergenic 8438 ENSMUSG00000045730.4 ENSMUSG00000045730 ENSMUST00000053640 Adrb2 protein_coding Interval_137237 chr6 70607454 70607676 + 0 NA promoter-TSS (ENSMUSG00000076598.3) IG_V_gene-promoter-TSS (ENSMUSG00000076598.3) 128 ENSMUSG00000076598.3 ENSMUSG00000076598 ENSMUST00000103399 Igkv3-7 IG_V_gene Interval_86548 chr19 41619460 41619853 + 0 NA intron (ENSMUSG00000025020.11, intron 25 of 35) protein_coding-intron (ENSMUSG00000025020.11, intron 25 of 36) 31005 ENSMUSG00000098286.1 ENSMUSG00000098286 ENSMUST00000183602 Mir8091 miRNA Interval_53514 chr14 57982385 57982605 + 0 NA intron (ENSMUSG00000021973.9, intron 1 of 7) protein_coding-intron (ENSMUSG00000021973.9, intron 1 of 11) -16889 ENSMUSG00000097303.2 ENSMUSG00000097303 ENSMUST00000224786 3110083C13Rik bidirectional_promoter_lncRNA Interval_148620 chr7 83433858 83434535 + 0 NA Intergenic Intergenic 22219 ENSMUSG00000108831.1 ENSMUSG00000108831 ENSMUST00000207404 Gm7957 processed_pseudogene Interval_21025 chr10 123496598 123497078 + 0 NA intron (ENSMUSG00000044071.9, intron 2 of 5) protein_coding-intron (ENSMUSG00000044071.9, intron 2 of 5) 59338 ENSMUSG00000112036.1 ENSMUSG00000112036 ENSMUST00000220160 Gm47801 TEC Interval_97678 chr2 142657602 142657914 + 0 NA intron (ENSMUSG00000038844.10, intron 25 of 26) protein_coding-intron (ENSMUSG00000038844.10, intron 24 of 25) 80830 ENSMUSG00000083215.3 ENSMUSG00000083215 ENSMUST00000119377 Rbmx2-ps processed_pseudogene Interval_129121 chr5 117515447 117517161 + 0 NA intron (ENSMUSG00000061578.8, intron 3 of 20) protein_coding-intron (ENSMUSG00000061578.8, intron 3 of 3) -4395 ENSMUSG00000107199.1 ENSMUSG00000107199 ENSMUST00000201553 Gm42550 TEC Interval_11498 chr1 182254984 182255265 + 0 NA Intergenic Intergenic 27100 ENSMUSG00000038633.5 ENSMUSG00000038633 ENSMUST00000133052 Degs1 protein_coding Interval_60408 chr15 73567693 73567920 + 0 NA TTS (ENSMUSG00000036661.14) protein_coding-TTS (ENSMUSG00000036661.14) 21156 ENSMUSG00000079020.9 ENSMUSG00000079020 ENSMUST00000150409 Slc45a4 protein_coding Interval_122553 chr5 23771118 23771649 + 0 NA intron (ENSMUSG00000057541.14, intron 3 of 5) protein_coding-intron (ENSMUSG00000057541.14, intron 4 of 15) 4285 ENSMUSG00000057541.14 ENSMUSG00000057541 ENSMUST00000195909 Pus7 protein_coding Interval_168613 chr9 84135707 84135933 + 0 NA Intergenic Intergenic -52535 ENSMUSG00000077666.1 ENSMUSG00000077666 ENSMUST00000104478 Gm26146 snRNA Interval_62946 chr15 98082613 98083472 + 0 NA intron (ENSMUSG00000033075.17, intron 3 of 8) protein_coding-intron (ENSMUSG00000033075.17, intron 3 of 17) 4502 ENSMUSG00000033075.17 ENSMUSG00000033075 ENSMUST00000182611 Senp1 protein_coding Interval_64361 chr16 10814662 10815602 + 0 NA Intergenic Intergenic 2217 ENSMUSG00000079740.1 ENSMUSG00000079740 ENSMUST00000115822 Gm11172 protein_coding Interval_16762 chr10 68013063 68013588 + 0 NA intron (ENSMUSG00000037846.18, intron 6 of 14) protein_coding-intron (ENSMUSG00000037846.18, intron 6 of 14) 13301 ENSMUSG00000086838.1 ENSMUSG00000086838 ENSMUST00000143555 Gm16212 antisense Interval_4098 chr1 68163405 68163713 + 0 NA intron (ENSMUSG00000062209.15, intron 20 of 26) protein_coding-intron (ENSMUSG00000062209.15, intron 20 of 27) -47012 ENSMUSG00000102449.1 ENSMUSG00000102449 ENSMUST00000193344 Gm37100 TEC Interval_118923 chr4 134477983 134478505 + 0 NA Intergenic Intergenic 9845 ENSMUSG00000028832.11 ENSMUSG00000028832 ENSMUST00000105868 Stmn1 protein_coding Interval_153939 chr8 11381718 11383548 + 0 NA intron (ENSMUSG00000031503.13, intron 4 of 47) protein_coding-intron (ENSMUSG00000031503.13, intron 4 of 47) 35259 ENSMUSG00000084783.1 ENSMUSG00000084783 ENSMUST00000148654 Gm15419 antisense Interval_149876 chr7 102154237 102154456 + 0 NA intron (ENSMUSG00000063550.8, intron 15 of 22) protein_coding-intron (ENSMUSG00000063550.8, intron 15 of 22) 29219 ENSMUSG00000063550.8 ENSMUSG00000063550 ENSMUST00000211375 Nup98 protein_coding Interval_10461 chr1 171118362 171118763 + 0 NA intron (ENSMUSG00000026649.14, intron 1 of 4) protein_coding-intron (ENSMUSG00000026649.14, intron 1 of 4) -4612 ENSMUSG00000026649.14 ENSMUSG00000026649 ENSMUST00000124157 Cfap126 protein_coding Interval_91955 chr2 52016379 52016954 + 0 NA Intergenic Intergenic -21343 ENSMUSG00000053475.5 ENSMUSG00000053475 ENSMUST00000065927 Tnfaip6 protein_coding Interval_151044 chr7 118135117 118136555 + 0 NA promoter-TSS (ENSMUSG00000030655.15) protein_coding-promoter-TSS (ENSMUSG00000030655.15) -6264 ENSMUSG00000030654.9 ENSMUSG00000030654 ENSMUST00000206536 Arl6ip1 protein_coding Interval_119642 chr4 138930931 138931191 + 0 NA Intergenic Intergenic -17116 ENSMUSG00000041161.8 ENSMUSG00000041161 ENSMUST00000097830 Otud3 protein_coding Interval_108205 chr3 122471173 122472047 + 0 NA TTS (ENSMUSG00000028121.8) protein_coding-TTS (ENSMUSG00000028121.8) 6883 ENSMUSG00000087743.1 ENSMUSG00000087743 ENSMUST00000157118 Gm25153 snRNA Interval_114233 chr4 69428670 69429952 + 0 NA Intergenic Intergenic -134190 ENSMUSG00000082553.1 ENSMUSG00000082553 ENSMUST00000120872 Gm11404 processed_pseudogene Interval_126712 chr5 92206177 92206498 + 0 NA Intergenic Intergenic 6013 ENSMUSG00000029409.7 ENSMUSG00000029409 ENSMUST00000202847 U90926 processed_transcript Interval_158286 chr8 80830238 80831370 + 0 NA promoter-TSS (ENSMUSG00000031714.9) protein_coding-promoter-TSS (ENSMUSG00000031714.9) 80 ENSMUSG00000031714.9 ENSMUSG00000031714 ENSMUST00000211018 Gab1 protein_coding Interval_37241 chr12 62644586 62645065 + 0 NA Intergenic Intergenic -42997 ENSMUSG00000091396.2 ENSMUSG00000091396 ENSMUST00000172433 Spanxn4 processed_pseudogene Interval_157288 chr8 69020775 69021055 + 0 NA Intergenic Intergenic -19232 ENSMUSG00000110594.1 ENSMUSG00000110594 ENSMUST00000212717 Gm33103 lincRNA Interval_51764 chr14 32055526 32056925 + 0 NA intron (ENSMUSG00000021903.11, intron 6 of 7) protein_coding-intron (ENSMUSG00000021903.11, intron 8 of 9) -19887 ENSMUSG00000115628.1 ENSMUSG00000115628 ENSMUST00000228805 Gm49084 processed_pseudogene Interval_172980 chrX 59565889 59568502 + 0 NA exon (ENSMUSG00000031137.17, exon 2 of 6) protein_coding-exon (ENSMUSG00000031137.17, exon 2 of 6) 853 ENSMUSG00000031137.17 ENSMUSG00000031137 ENSMUST00000150413 Fgf13 protein_coding Interval_156563 chr8 52076986 52077198 + 0 NA Intergenic Intergenic -1512 ENSMUSG00000065337.1 ENSMUSG00000065337 ENSMUST00000083403 Gm24929 snRNA Interval_37073 chr12 57452325 57452531 + 0 NA intron (ENSMUSG00000047022.18, intron 10 of 12) protein_coding-intron (ENSMUSG00000047022.18, intron 9 of 10) -2308 ENSMUSG00000086372.1 ENSMUSG00000086372 ENSMUST00000145464 Gm16246 antisense Interval_10055 chr1 165432749 165433023 + 0 NA intron (ENSMUSG00000026571.12, intron 1 of 11) protein_coding-intron (ENSMUSG00000026571.12, intron 1 of 18) -7739 ENSMUSG00000089299.1 ENSMUSG00000089299 ENSMUST00000158674 Gm24637 snoRNA Interval_647 chr1 9517080 9517436 + 0 NA Intergenic Intergenic -15736 ENSMUSG00000103411.1 ENSMUSG00000103411 ENSMUST00000192792 Gm18300 processed_pseudogene Interval_105410 chr3 86075576 86076012 + 0 NA intron (ENSMUSG00000028082.14, intron 3 of 20) protein_coding-intron (ENSMUSG00000028082.14, intron 2 of 19) -8696 ENSMUSG00000028082.14 ENSMUSG00000028082 ENSMUST00000183202 Sh3d19 protein_coding Interval_45808 chr13 58214770 58216334 + 0 NA promoter-TSS (ENSMUSG00000005312.15) protein_coding-promoter-TSS (ENSMUSG00000005312.15) -3167 ENSMUSG00000114886.1 ENSMUSG00000114886 ENSMUST00000223945 Gm48432 processed_pseudogene Interval_8618 chr1 144003796 144005131 + 0 NA promoter-TSS (ENSMUSG00000026360.9) protein_coding-promoter-TSS (ENSMUSG00000026360.9) -431 ENSMUSG00000026360.9 ENSMUSG00000026360 ENSMUST00000134817 Rgs2 protein_coding Interval_153450 chr7 144866800 144867978 + 0 NA Intergenic Intergenic 20022 ENSMUSG00000050917.5 ENSMUSG00000050917 ENSMUST00000060336 Fgf4 protein_coding Interval_74025 chr17 46132037 46132699 + 0 NA intron (ENSMUSG00000023966.8, intron 4 of 4) protein_coding-intron (ENSMUSG00000023966.8, intron 4 of 4) 4427 ENSMUSG00000023966.8 ENSMUSG00000023966 ENSMUST00000152354 Rsph9 protein_coding Interval_162412 chr8 128272682 128273387 + 0 NA Intergenic Intergenic 5191 ENSMUSG00000099326.1 ENSMUSG00000099326 ENSMUST00000184910 Mir21c miRNA Interval_63356 chr15 100516182 100516461 + 0 NA intron (ENSMUSG00000009733.9, intron 9 of 15) protein_coding-intron (ENSMUSG00000009733.9, intron 9 of 15) -4077 ENSMUSG00000009733.9 ENSMUSG00000009733 ENSMUST00000231138 Tfcp2 protein_coding Interval_103117 chr3 35544197 35544838 + 0 NA Intergenic Intergenic -1377 ENSMUSG00000105040.1 ENSMUSG00000105040 ENSMUST00000199777 Ube2l3-ps1 processed_pseudogene Interval_91330 chr2 37802674 37803519 + 0 NA intron (ENSMUSG00000035392.17, intron 20 of 21) protein_coding-intron (ENSMUSG00000035392.17, intron 20 of 21) 11925 ENSMUSG00000035403.10 ENSMUSG00000035403 ENSMUST00000137693 Crb2 protein_coding Interval_81246 chr18 56726418 56728729 + 0 NA promoter-TSS (ENSMUSG00000024590.8) protein_coding-promoter-TSS (ENSMUSG00000024590.8) -868 ENSMUSG00000024590.8 ENSMUSG00000024590 ENSMUST00000128651 Lmnb1 protein_coding Interval_54868 chr14 75912173 75913022 + 0 NA intron (ENSMUSG00000067995.4, intron 6 of 7) protein_coding-intron (ENSMUSG00000067995.4, intron 6 of 7) -42412 ENSMUSG00000046523.5 ENSMUSG00000046523 ENSMUST00000050120 Kctd4 protein_coding Interval_42486 chr13 14033628 14034296 + 0 NA intron (ENSMUSG00000039233.12, intron 1 of 16) protein_coding-intron (ENSMUSG00000039233.12, intron 1 of 16) -7430 ENSMUSG00000113819.1 ENSMUSG00000113819 ENSMUST00000220914 Gm48017 processed_pseudogene Interval_50015 chr13 119727322 119728192 + 0 NA exon (ENSMUSG00000095930.1, exon 2 of 4) protein_coding-exon (ENSMUSG00000095930.1, exon 2 of 4) 10637 ENSMUSG00000095930.1 ENSMUSG00000095930 ENSMUST00000178973 Nim1k protein_coding Interval_36746 chr12 52887589 52888406 + 0 NA exon (ENSMUSG00000061603.8, exon 4 of 14) protein_coding-exon (ENSMUSG00000061603.8, exon 4 of 14) 92161 ENSMUSG00000061603.8 ENSMUSG00000061603 ENSMUST00000219786 Akap6 protein_coding Interval_24070 chr11 29960591 29961887 + 0 NA intron (ENSMUSG00000044072.14, intron 2 of 41) protein_coding-intron (ENSMUSG00000044072.14, intron 2 of 41) -21175 ENSMUSG00000080906.1 ENSMUSG00000080906 ENSMUST00000121962 Gm12095 processed_pseudogene Interval_86603 chr19 41994453 41996183 + 0 NA intron (ENSMUSG00000025171.2, intron 1 of 2) protein_coding-intron (ENSMUSG00000025171.2, intron 1 of 2) -14179 ENSMUSG00000025159.8 ENSMUSG00000025159 ENSMUST00000169765 Mms19 protein_coding Interval_16437 chr10 62862573 62862985 + 0 NA intron (ENSMUSG00000047146.17, intron 3 of 12) protein_coding-intron (ENSMUSG00000047146.17, intron 2 of 10) -2785 ENSMUSG00000112309.1 ENSMUSG00000112309 ENSMUST00000220243 Gm48353 TEC Interval_152232 chr7 130802842 130803576 + 0 NA intron (ENSMUSG00000040298.6, intron 9 of 15) protein_coding-intron (ENSMUSG00000040298.6, intron 9 of 15) 29042 ENSMUSG00000040298.6 ENSMUSG00000040298 ENSMUST00000208593 Btbd16 protein_coding Interval_140663 chr6 120371476 120371688 + 0 NA intron (ENSMUSG00000030180.15, intron 3 of 20) protein_coding-intron (ENSMUSG00000030180.15, intron 3 of 27) -3235 ENSMUSG00000030180.15 ENSMUSG00000030180 ENSMUST00000142791 Kdm5a protein_coding Interval_138703 chr6 91281138 91281488 + 0 NA Intergenic Intergenic 68486 ENSMUSG00000064080.12 ENSMUSG00000064080 ENSMUST00000137029 Fbln2 protein_coding Interval_135281 chr6 38007500 38008926 + 0 NA intron (ENSMUSG00000029830.15, intron 9 of 10) protein_coding-intron (ENSMUSG00000029830.15, intron 14 of 15) 10398 ENSMUSG00000029830.15 ENSMUSG00000029830 ENSMUST00000040486 Svopl protein_coding Interval_73973 chr17 45775620 45775952 + 0 NA intron (ENSMUSG00000097727.8, intron 1 of 4) lincRNA-intron (ENSMUSG00000097727.8, intron 1 of 2) 8591 ENSMUSG00000097727.8 ENSMUSG00000097727 ENSMUST00000233473 F630040K05Rik lincRNA Interval_72036 chr17 27666906 27667429 + 0 NA intron (ENSMUSG00000040276.15, intron 1 of 9) protein_coding-intron (ENSMUSG00000040276.15, intron 1 of 9) 11579 ENSMUSG00000040276.15 ENSMUSG00000040276 ENSMUST00000231854 Pacsin1 protein_coding Interval_119177 chr4 136021112 136022053 + 0 NA exon (ENSMUSG00000028668.5, exon 1 of 11) protein_coding-exon (ENSMUSG00000028668.5, exon 1 of 11) 181 ENSMUSG00000028668.5 ENSMUSG00000028668 ENSMUST00000030427 Eloa protein_coding Interval_41132 chr12 111370036 111370762 + 0 NA intron (ENSMUSG00000021279.5, intron 2 of 4) protein_coding-intron (ENSMUSG00000021279.5, intron 1 of 36) -36410 ENSMUSG00000087075.2 ENSMUSG00000087075 ENSMUST00000150384 Lbhd2 protein_coding Interval_136168 chr6 51655180 51655427 + 0 NA Intergenic Intergenic 33671 ENSMUSG00000094528.1 ENSMUSG00000094528 ENSMUST00000175195 Gm22914 miRNA Interval_117829 chr4 126460556 126460733 + 0 NA promoter-TSS (ENSMUSG00000041530.17) protein_coding-promoter-TSS (ENSMUSG00000041530.17) 7777 ENSMUSG00000041530.17 ENSMUSG00000041530 ENSMUST00000149425 Ago1 protein_coding Interval_81003 chr18 52570993 52571624 + 0 NA intron (ENSMUSG00000118365.1, intron 2 of 2) antisense-intron (ENSMUSG00000118365.1, intron 2 of 2) -41441 ENSMUSG00000024529.14 ENSMUSG00000024529 ENSMUST00000171470 Lox protein_coding Interval_88013 chr19 57890738 57891432 + 0 NA intron (ENSMUSG00000054843.9, intron 26 of 28) protein_coding-intron (ENSMUSG00000054843.9, intron 26 of 28) -160082 ENSMUSG00000093757.1 ENSMUSG00000093757 ENSMUST00000176631 Mir5623 miRNA Interval_123901 chr5 36390435 36390706 + 0 NA intron (ENSMUSG00000029093.14, intron 1 of 7) protein_coding-intron (ENSMUSG00000029093.14, intron 1 of 26) -24652 ENSMUSG00000029093.14 ENSMUSG00000029093 ENSMUST00000141508 Sorcs2 protein_coding Interval_102209 chr3 19480838 19482237 + 0 NA Intergenic Intergenic -49710 ENSMUSG00000027606.12 ENSMUSG00000027606 ENSMUST00000165693 Dnajc5b protein_coding Interval_134896 chr6 33297465 33297777 + 0 NA intron (ENSMUSG00000029763.17, intron 4 of 5) protein_coding-intron (ENSMUSG00000029763.17, intron 4 of 17) -35796 ENSMUSG00000029763.17 ENSMUSG00000029763 ENSMUST00000134653 Exoc4 protein_coding Interval_151036 chr7 118076634 118076973 + 0 NA Intergenic Intergenic 38453 ENSMUSG00000008683.16 ENSMUSG00000008683 ENSMUST00000128482 Rps15a protein_coding Interval_122637 chr5 24382996 24383965 + 0 NA TTS (ENSMUSG00000038295.14) protein_coding-TTS (ENSMUSG00000038295.14) 134 ENSMUSG00000086769.7 ENSMUSG00000086769 ENSMUST00000156403 Gm15587 antisense Interval_159008 chr8 88755089 88756121 + 0 NA Intergenic Intergenic 20494 ENSMUSG00000036712.15 ENSMUSG00000036712 ENSMUST00000211671 Cyld protein_coding Interval_145471 chr7 35015999 35016394 + 0 NA intron (ENSMUSG00000063931.14, intron 5 of 6) protein_coding-intron (ENSMUSG00000063931.14, intron 9 of 14) 36341 ENSMUSG00000108486.1 ENSMUSG00000108486 ENSMUST00000205869 Gm44836 sense_intronic Interval_30947 chr11 97349961 97351252 + 0 NA intron (ENSMUSG00000070337.4, intron 1 of 1) protein_coding-intron (ENSMUSG00000070337.4, intron 1 of 10) 1471 ENSMUSG00000070337.4 ENSMUSG00000070337 ENSMUST00000162544 Gpr179 protein_coding Interval_133394 chr6 4645855 4646110 + 0 NA Intergenic Intergenic 14855 ENSMUSG00000015189.12 ENSMUSG00000015189 ENSMUST00000204372 Casd1 protein_coding Interval_13806 chr10 22714496 22715119 + 0 NA intron (ENSMUSG00000071359.13, intron 1 of 6) protein_coding-intron (ENSMUSG00000071359.13, intron 1 of 6) -8422 ENSMUSG00000071359.13 ENSMUSG00000071359 ENSMUST00000138022 Tbpl1 protein_coding Interval_35232 chr12 18562446 18563442 + 0 NA intron (ENSMUSG00000113604.1, intron 2 of 2) unprocessed_pseudogene-intron (ENSMUSG00000113604.1, intron 2 of 2) 3329 ENSMUSG00000113604.1 ENSMUSG00000113604 ENSMUST00000222589 Gm19786 unprocessed_pseudogene Interval_107188 chr3 104441259 104442553 + 0 NA intron (ENSMUSG00000032913.13, intron 1 of 1) protein_coding-intron (ENSMUSG00000032913.13, intron 1 of 1) -23579 ENSMUSG00000106453.1 ENSMUSG00000106453 ENSMUST00000200606 Gm9273 processed_pseudogene Interval_121799 chr5 8376294 8376644 + 0 NA Intergenic Intergenic 46200 ENSMUSG00000002297.16 ENSMUSG00000002297 ENSMUST00000198785 Dbf4 protein_coding Interval_45879 chr13 58740888 58741212 + 0 NA TTS (ENSMUSG00000114384.1) lincRNA-TTS (ENSMUSG00000114384.1) -15501 ENSMUSG00000114325.1 ENSMUSG00000114325 ENSMUST00000225684 Rpl13-ps2 processed_pseudogene Interval_60897 chr15 77694861 77695354 + 0 NA Intergenic Intergenic -3750 ENSMUSG00000071716.5 ENSMUSG00000071716 ENSMUST00000096358 Apol7e protein_coding Interval_153215 chr7 142505898 142506732 + 0 NA TTS (ENSMUSG00000061723.18) protein_coding-TTS (ENSMUSG00000061723.18) 7469 ENSMUSG00000061723.18 ENSMUSG00000061723 ENSMUST00000144259 Tnnt3 protein_coding Interval_144039 chr7 19136772 19137688 + 0 NA exon (ENSMUSG00000050428.7, exon 2 of 2) protein_coding-exon (ENSMUSG00000050428.7, exon 2 of 2) 5537 ENSMUSG00000050428.7 ENSMUSG00000050428 ENSMUST00000165913 Fbxo46 protein_coding Interval_102773 chr3 30929509 30930702 + 0 NA intron (ENSMUSG00000037652.15, intron 8 of 13) protein_coding-intron (ENSMUSG00000037652.15, intron 10 of 16) 27533 ENSMUSG00000102369.1 ENSMUSG00000102369 ENSMUST00000194340 9530022L04Rik TEC Interval_42938 chr13 21530206 21531399 + 0 NA intron (ENSMUSG00000063894.15, intron 1 of 1) protein_coding-intron (ENSMUSG00000063894.15, intron 1 of 5) -3780 ENSMUSG00000063894.15 ENSMUSG00000063894 ENSMUST00000110481 Zkscan8 protein_coding Interval_161463 chr8 120574386 120575971 + 0 NA TTS (ENSMUSG00000031822.20) protein_coding-TTS (ENSMUSG00000031822.20) 11030 ENSMUSG00000031821.11 ENSMUSG00000031821 ENSMUST00000126094 Gins2 protein_coding Interval_131912 chr5 140748993 140749833 + 0 NA intron (ENSMUSG00000050022.16, intron 1 of 3) protein_coding-intron (ENSMUSG00000050022.16, intron 7 of 7) 25275 ENSMUSG00000050022.16 ENSMUSG00000050022 ENSMUST00000176035 Amz1 protein_coding Interval_47878 chr13 94098639 94100305 + 0 NA intron (ENSMUSG00000045312.12, intron 1 of 2) protein_coding-intron (ENSMUSG00000045312.12, intron 1 of 3) -18470 ENSMUSG00000045312.12 ENSMUSG00000045312 ENSMUST00000121618 Lhfpl2 protein_coding Interval_46092 chr13 61603764 61604522 + 0 NA Intergenic Intergenic -35969 ENSMUSG00000114904.1 ENSMUSG00000114904 ENSMUST00000225902 Gm49352 protein_coding Interval_96536 chr2 125484692 125485146 + 0 NA intron (ENSMUSG00000027204.13, intron 1 of 9) protein_coding-intron (ENSMUSG00000027204.13, intron 2 of 65) -20170 ENSMUSG00000053615.1 ENSMUSG00000053615 ENSMUST00000066157 Gm9913 antisense Interval_49173 chr13 109164153 109165041 + 0 NA intron (ENSMUSG00000021699.17, intron 1 of 14) protein_coding-intron (ENSMUSG00000021699.17, intron 1 of 14) -160147 ENSMUSG00000076946.2 ENSMUSG00000076946 ENSMUST00000103758 Mir582 miRNA Interval_82956 chr18 79995326 79996883 + 0 NA Intergenic Intergenic -16286 ENSMUSG00000117759.1 ENSMUSG00000117759 ENSMUST00000235145 AA684185 transcribed_processed_pseudogene Interval_157702 chr8 72382216 72383028 + 0 NA intron (ENSMUSG00000006276.10, intron 11 of 21) protein_coding-intron (ENSMUSG00000006276.10, intron 11 of 23) 38816 ENSMUSG00000006276.10 ENSMUSG00000006276 ENSMUST00000211977 Eps15l1 protein_coding Interval_65342 chr16 21694005 21695461 + 0 NA promoter-TSS (ENSMUSG00000043391.10) protein_coding-promoter-TSS (ENSMUSG00000043391.10) -153 ENSMUSG00000043391.10 ENSMUSG00000043391 ENSMUST00000232634 2510009E07Rik protein_coding Interval_32098 chr11 105231877 105232203 + 0 NA intron (ENSMUSG00000020694.17, intron 6 of 17) protein_coding-intron (ENSMUSG00000020694.17, intron 6 of 20) 23187 ENSMUSG00000020694.17 ENSMUSG00000020694 ENSMUST00000146910 Tlk2 protein_coding Interval_130162 chr5 124624095 124624690 + 0 NA exon (ENSMUSG00000029386.15, exon 16 of 19) protein_coding-exon (ENSMUSG00000029386.15, exon 16 of 19) -4184 ENSMUSG00000038023.12 ENSMUSG00000038023 ENSMUST00000197161 Atp6v0a2 protein_coding Interval_148357 chr7 80740887 80741281 + 0 NA TTS (ENSMUSG00000030536.10) protein_coding-TTS (ENSMUSG00000030536.10) -10738 ENSMUSG00000108321.1 ENSMUSG00000108321 ENSMUST00000205608 Gm44649 antisense Interval_58272 chr15 31554914 31555568 + 0 NA Intergenic Intergenic -10148 ENSMUSG00000022235.15 ENSMUSG00000022235 ENSMUST00000161088 Cmbl protein_coding Interval_7468 chr1 131613422 131614172 + 0 NA Intergenic Intergenic 14074 ENSMUSG00000026432.7 ENSMUSG00000026432 ENSMUST00000190410 Avpr1b protein_coding Interval_137728 chr6 81805776 81806104 + 0 NA promoter-TSS (ENSMUSG00000089445.1) snoRNA-promoter-TSS (ENSMUSG00000089445.1) -851 ENSMUSG00000089445.1 ENSMUSG00000089445 ENSMUST00000158820 Gm22530 snoRNA Interval_37753 chr12 71716162 71716423 + 0 NA intron (ENSMUSG00000114028.1, intron 3 of 5) lincRNA-intron (ENSMUSG00000114028.1, intron 3 of 5) -8360 ENSMUSG00000084463.1 ENSMUSG00000084463 ENSMUST00000122514 Gm22959 misc_RNA Interval_146202 chr7 44664799 44665490 + 0 NA TTS (ENSMUSG00000030739.18) protein_coding-TTS (ENSMUSG00000030739.18) -3089 ENSMUSG00000070574.2 ENSMUSG00000070574 ENSMUST00000094460 2310016G11Rik antisense Interval_134322 chr6 25096523 25096842 + 0 NA Intergenic Intergenic -17779 ENSMUSG00000087867.1 ENSMUSG00000087867 ENSMUST00000157242 Gm24443 snoRNA Interval_147937 chr7 75759553 75760383 + 0 NA Intergenic Intergenic -2600 ENSMUSG00000076961.1 ENSMUSG00000076961 ENSMUST00000103773 Gm23251 miRNA Interval_152048 chr7 128569444 128569823 + 0 NA Intergenic Intergenic 23710 ENSMUSG00000108795.1 ENSMUSG00000108795 ENSMUST00000205396 Gm45121 lincRNA Interval_12067 chr1 189415112 189415977 + 0 NA Intergenic Intergenic 22194 ENSMUSG00000093791.1 ENSMUSG00000093791 ENSMUST00000180257 Gm24092 miRNA Interval_125181 chr5 65140621 65140857 + 0 NA intron (ENSMUSG00000054920.12, intron 1 of 9) protein_coding-intron (ENSMUSG00000054920.12, intron 1 of 10) 4437 ENSMUSG00000087748.1 ENSMUSG00000087748 ENSMUST00000157123 Gm25154 rRNA Interval_81814 chr18 64953607 64954817 + 0 NA intron (ENSMUSG00000024589.18, intron 1 of 29) protein_coding-intron (ENSMUSG00000024589.18, intron 1 of 29) 46963 ENSMUSG00000117895.1 ENSMUSG00000117895 ENSMUST00000237218 Gm50368 antisense Interval_93987 chr2 80520152 80520492 + 0 NA intron (ENSMUSG00000027002.13, intron 22 of 31) protein_coding-intron (ENSMUSG00000027002.13, intron 21 of 30) 5358 ENSMUSG00000027002.13 ENSMUSG00000027002 ENSMUST00000134587 Nckap1 protein_coding Interval_169538 chr9 98974985 98975225 + 0 NA Intergenic Intergenic -11296 ENSMUSG00000032463.10 ENSMUSG00000032463 ENSMUST00000185472 Faim protein_coding Interval_128519 chr5 113796839 113797831 + 0 NA intron (ENSMUSG00000054675.5, intron 1 of 2) protein_coding-intron (ENSMUSG00000054675.5, intron 1 of 1) 3111 ENSMUSG00000054675.5 ENSMUSG00000054675 ENSMUST00000160374 Tmem119 protein_coding Interval_174219 chrX 140061003 140063076 + 0 NA promoter-TSS (ENSMUSG00000042433.2) protein_coding-promoter-TSS (ENSMUSG00000042433.2) 254 ENSMUSG00000072944.11 ENSMUSG00000072944 ENSMUST00000124075 Nup62cl protein_coding Interval_128586 chr5 114174755 114177083 + 0 NA promoter-TSS (ENSMUSG00000042010.16) protein_coding-promoter-TSS (ENSMUSG00000042010.16) 13 ENSMUSG00000042010.16 ENSMUSG00000042010 ENSMUST00000142489 Acacb protein_coding Interval_150010 chr7 104691655 104691850 + 0 NA TTS (ENSMUSG00000109821.1) processed_pseudogene-TTS (ENSMUSG00000109821.1) 1680 ENSMUSG00000109821.1 ENSMUSG00000109821 ENSMUST00000211165 Gm6593 processed_pseudogene Interval_142709 chr6 145084346 145085414 + 0 NA Intergenic Intergenic 28491 ENSMUSG00000086643.1 ENSMUSG00000086643 ENSMUST00000141440 Gm15687 antisense Interval_116901 chr4 118089338 118090575 + 0 NA intron (ENSMUSG00000028538.12, intron 2 of 11) protein_coding-intron (ENSMUSG00000028538.12, intron 2 of 11) -58074 ENSMUSG00000028538.12 ENSMUSG00000028538 ENSMUST00000126336 St3gal3 protein_coding Interval_46643 chr13 67867992 67868498 + 0 NA Intergenic Intergenic 4919 ENSMUSG00000064063.6 ENSMUSG00000064063 ENSMUST00000078471 BC048507 protein_coding Interval_149667 chr7 100514470 100514936 + 0 NA promoter-TSS (ENSMUSG00000030708.14) protein_coding-promoter-TSS (ENSMUSG00000030708.14) 257 ENSMUSG00000030708.14 ENSMUSG00000030708 ENSMUST00000154516 Dnajb13 protein_coding Interval_131237 chr5 135940452 135941105 + 0 NA Intergenic Intergenic -6224 ENSMUSG00000051391.9 ENSMUSG00000051391 ENSMUST00000126192 Ywhag protein_coding Interval_100401 chr2 168838452 168840512 + 0 NA Intergenic Intergenic 42686 ENSMUSG00000077761.1 ENSMUSG00000077761 ENSMUST00000104573 Gm25214 snoRNA Interval_94184 chr2 84900323 84900602 + 0 NA Intergenic Intergenic -13752 ENSMUSG00000050896.12 ENSMUSG00000050896 ENSMUST00000151759 Rtn4rl2 protein_coding Interval_66911 chr16 38482800 38484402 + 0 NA intron (ENSMUSG00000075122.5, intron 3 of 3) protein_coding-intron (ENSMUSG00000075122.5, intron 4 of 4) 24483 ENSMUSG00000075122.5 ENSMUSG00000075122 ENSMUST00000232409 Cd80 protein_coding Interval_152112 chr7 129469434 129469938 + 0 NA Intergenic Intergenic -66596 ENSMUSG00000108713.1 ENSMUSG00000108713 ENSMUST00000206093 Gm33027 lincRNA Interval_153592 chr8 3579476 3580150 + 0 NA promoter-TSS (ENSMUSG00000065952.13) protein_coding-promoter-TSS (ENSMUSG00000065952.13) 4417 ENSMUSG00000066902.7 ENSMUSG00000066902 ENSMUST00000146939 Rps23-ps2 processed_pseudogene Interval_10887 chr1 176630254 176631168 + 0 NA Intergenic Intergenic 11847 ENSMUSG00000103471.1 ENSMUSG00000103471 ENSMUST00000193453 Gm17966 processed_pseudogene Interval_165916 chr9 54613980 54614927 + 0 NA intron (ENSMUSG00000032281.11, intron 11 of 13) protein_coding-intron (ENSMUSG00000032281.11, intron 11 of 13) 28119 ENSMUSG00000032279.11 ENSMUSG00000032279 ENSMUST00000214136 Idh3a protein_coding Interval_77706 chr17 94526597 94526915 + 0 NA Intergenic Intergenic -81429 ENSMUSG00000117476.1 ENSMUSG00000117476 ENSMUST00000234959 Gm9416 processed_pseudogene Interval_19642 chr10 106815274 106815726 + 0 NA intron (ENSMUSG00000053825.15, intron 7 of 31) protein_coding-intron (ENSMUSG00000053825.15, intron 7 of 31) -77506 ENSMUSG00000053825.15 ENSMUSG00000053825 ENSMUST00000219024 Ppfia2 protein_coding Interval_172377 chrX 15199754 15199949 + 0 NA Intergenic Intergenic -88385 ENSMUSG00000045217.5 ENSMUSG00000045217 ENSMUST00000173100 Ppp1r2-ps9 transcribed_processed_pseudogene Interval_139014 chr6 94205837 94206137 + 0 NA intron (ENSMUSG00000045095.16, intron 2 of 2) protein_coding-intron (ENSMUSG00000045095.16, intron 1 of 21) 118047 ENSMUSG00000107545.1 ENSMUSG00000107545 ENSMUST00000204466 Gm44307 processed_pseudogene Interval_123880 chr5 36236667 36239550 + 0 NA intron (ENSMUSG00000029093.14, intron 1 of 7) protein_coding-intron (ENSMUSG00000029093.14, intron 1 of 26) 34087 ENSMUSG00000043430.5 ENSMUSG00000043430 ENSMUST00000052224 Psapl1 protein_coding Interval_64268 chr16 10067062 10067606 + 0 NA Intergenic Intergenic -21369 ENSMUSG00000098170.1 ENSMUSG00000098170 ENSMUST00000182416 Gm3890 processed_pseudogene Interval_65880 chr16 30008203 30010089 + 0 NA intron (ENSMUSG00000097184.2, intron 1 of 2) lincRNA-intron (ENSMUSG00000097184.2, intron 1 of 2) 479 ENSMUSG00000097184.2 ENSMUSG00000097184 ENSMUST00000181485 4632428C04Rik lincRNA Interval_166432 chr9 59439490 59439785 + 0 NA intron (ENSMUSG00000025234.11, intron 2 of 13) protein_coding-intron (ENSMUSG00000025234.11, intron 2 of 11) 32596 ENSMUSG00000090516.1 ENSMUSG00000090516 ENSMUST00000171632 Rps11-ps1 processed_pseudogene Interval_145555 chr7 35594394 35594921 + 0 NA intron (ENSMUSG00000034867.16, intron 2 of 2) protein_coding-intron (ENSMUSG00000034867.16, intron 2 of 28) -9075 ENSMUSG00000056043.5 ENSMUSG00000056043 ENSMUST00000069912 Rgs9bp protein_coding Interval_30387 chr11 94043759 94045284 + 0 NA TTS (ENSMUSG00000020859.16) protein_coding-TTS (ENSMUSG00000020859.16) 951 ENSMUSG00000020859.16 ENSMUSG00000020859 ENSMUST00000153076 Spag9 protein_coding Interval_168445 chr9 80525907 80526994 + 0 NA Intergenic Intergenic -61012 ENSMUSG00000032343.15 ENSMUSG00000032343 ENSMUST00000185068 Impg1 protein_coding Interval_60358 chr15 73154496 73154782 + 0 NA intron (ENSMUSG00000036698.11, intron 1 of 18) protein_coding-intron (ENSMUSG00000036698.11, intron 1 of 18) 23208 ENSMUSG00000036698.11 ENSMUSG00000036698 ENSMUST00000230464 Ago2 protein_coding Interval_168155 chr9 77608009 77608456 + 0 NA Intergenic Intergenic -28268 ENSMUSG00000044938.8 ENSMUSG00000044938 ENSMUST00000057781 Klhl31 protein_coding Interval_95160 chr2 104441898 104443200 + 0 NA intron (ENSMUSG00000027177.14, intron 3 of 16) protein_coding-intron (ENSMUSG00000027177.14, intron 3 of 15) -3297 ENSMUSG00000027177.14 ENSMUSG00000027177 ENSMUST00000132622 Hipk3 protein_coding Interval_40093 chr12 101120831 101121289 + 0 NA Intergenic Intergenic -3949 ENSMUSG00000113817.1 ENSMUSG00000113817 ENSMUST00000223122 Gm21056 transcribed_unprocessed_pseudogene Interval_146677 chr7 49347079 49349314 + 0 NA exon (ENSMUSG00000109051.1, exon 1 of 1) TEC-exon (ENSMUSG00000109051.1, exon 1 of 1) 2102 ENSMUSG00000109051.1 ENSMUSG00000109051 ENSMUST00000208060 Gm44913 TEC Interval_85083 chr19 22447792 22448546 + 0 NA promoter-TSS (ENSMUSG00000052387.16) protein_coding-promoter-TSS (ENSMUSG00000052387.16) -14 ENSMUSG00000052387.16 ENSMUSG00000052387 ENSMUST00000237223 Trpm3 protein_coding Interval_25961 chr11 53157880 53158078 + 0 NA intron (ENSMUSG00000036264.9, intron 8 of 15) protein_coding-intron (ENSMUSG00000036264.9, intron 8 of 15) -37923 ENSMUSG00000087668.1 ENSMUSG00000087668 ENSMUST00000137096 Gm11186 antisense Interval_55407 chr14 86794668 86795098 + 0 NA intron (ENSMUSG00000022021.14, intron 25 of 26) protein_coding-intron (ENSMUSG00000022021.14, intron 25 of 27) -87698 ENSMUSG00000115306.1 ENSMUSG00000115306 ENSMUST00000226731 Gm49159 TEC Interval_121010 chr4 152203091 152203361 + 0 NA promoter-TSS (ENSMUSG00000085724.1) sense_intronic-promoter-TSS (ENSMUSG00000085724.1) -700 ENSMUSG00000085724.1 ENSMUSG00000085724 ENSMUST00000127752 Gm13096 sense_intronic Interval_64342 chr16 10633950 10634731 + 0 NA intron (ENSMUSG00000068663.14, intron 15 of 22) protein_coding-intron (ENSMUSG00000068663.14, intron 15 of 20) 49199 ENSMUSG00000087384.1 ENSMUSG00000087384 ENSMUST00000126849 Gm15558 antisense Interval_130705 chr5 129908275 129910119 + 0 NA exon (ENSMUSG00000095789.6, exon 1 of 1) protein_coding-exon (ENSMUSG00000095789.6, exon 1 of 1) 657 ENSMUSG00000095789.6 ENSMUSG00000095789 ENSMUST00000192787 Nupr1l protein_coding Interval_151577 chr7 124061067 124061642 + 0 NA intron (ENSMUSG00000078591.1, intron 1 of 1) protein_coding-intron (ENSMUSG00000078591.1, intron 1 of 1) -77900 ENSMUSG00000098129.1 ENSMUSG00000098129 ENSMUST00000181984 Gm27040 antisense Interval_36709 chr12 52347481 52348043 + 0 NA Intergenic Intergenic 100363 ENSMUSG00000112139.1 ENSMUSG00000112139 ENSMUST00000218097 Gm47431 lincRNA Interval_112777 chr4 44928600 44929021 + 0 NA intron (ENSMUSG00000035649.17, intron 1 of 2) protein_coding-intron (ENSMUSG00000035649.17, intron 3 of 4) -14943 ENSMUSG00000084854.1 ENSMUSG00000084854 ENSMUST00000154177 Gm12678 lincRNA Interval_117862 chr4 126707286 126707601 + 0 NA intron (ENSMUSG00000028837.8, intron 4 of 4) protein_coding-intron (ENSMUSG00000028837.8, intron 4 of 5) 28797 ENSMUSG00000042477.7 ENSMUSG00000042477 ENSMUST00000048194 Tfap2e protein_coding Interval_153041 chr7 141024687 141026870 + 0 NA Intergenic Intergenic -3353 ENSMUSG00000091441.1 ENSMUSG00000091441 ENSMUST00000170892 Gm17387 protein_coding Interval_171601 chr9 119467367 119467909 + 0 NA Intergenic Intergenic 22662 ENSMUSG00000042787.15 ENSMUSG00000042787 ENSMUST00000214462 Exog protein_coding Interval_153333 chr7 143685368 143686318 + 0 NA promoter-TSS (ENSMUSG00000037613.16) protein_coding-promoter-TSS (ENSMUSG00000037613.16) 29 ENSMUSG00000037613.16 ENSMUSG00000037613 ENSMUST00000208613 Tnfrsf23 protein_coding Interval_151803 chr7 126758999 126761106 + 0 NA promoter-TSS (ENSMUSG00000063065.13) protein_coding-promoter-TSS (ENSMUSG00000063065.13) 392 ENSMUSG00000063065.13 ENSMUSG00000063065 ENSMUST00000135649 Mapk3 protein_coding Interval_166258 chr9 57836093 57837388 + 0 NA promoter-TSS (ENSMUSG00000004661.15) protein_coding-promoter-TSS (ENSMUSG00000004661.15) -40519 ENSMUSG00000004661.15 ENSMUSG00000004661 ENSMUST00000167670 Arid3b protein_coding Interval_5330 chr1 87636505 87637979 + 0 NA intron (ENSMUSG00000026288.14, intron 2 of 26) protein_coding-intron (ENSMUSG00000026288.14, intron 2 of 26) -38997 ENSMUSG00000026288.14 ENSMUSG00000026288 ENSMUST00000163548 Inpp5d protein_coding Interval_136015 chr6 49633623 49634950 + 0 NA Intergenic Intergenic -90559 ENSMUSG00000108266.1 ENSMUSG00000108266 ENSMUST00000204010 Gm5305 processed_pseudogene Interval_24818 chr11 39677667 39679436 + 0 NA Intergenic Intergenic 49161 ENSMUSG00000083806.1 ENSMUSG00000083806 ENSMUST00000117479 Gm12131 processed_pseudogene Interval_12223 chr1 190935607 190935810 + 0 NA intron (ENSMUSG00000026634.16, intron 3 of 3) protein_coding-intron (ENSMUSG00000026634.16, intron 3 of 9) -1544 ENSMUSG00000026634.16 ENSMUSG00000026634 ENSMUST00000146048 Angel2 protein_coding Interval_140017 chr6 113448112 113448356 + 0 NA TTS (ENSMUSG00000051256.10) protein_coding-TTS (ENSMUSG00000051256.10) 5639 ENSMUSG00000051256.10 ENSMUSG00000051256 ENSMUST00000204254 Jagn1 protein_coding Interval_136868 chr6 61978499 61978762 + 0 NA intron (ENSMUSG00000039578.17, intron 10 of 10) protein_coding-intron (ENSMUSG00000039578.17, intron 9 of 9) 3532 ENSMUSG00000108246.1 ENSMUSG00000108246 ENSMUST00000203440 Gm43896 TEC Interval_132444 chr5 144953922 144955616 + 0 NA intron (ENSMUSG00000038780.14, intron 1 of 18) protein_coding-intron (ENSMUSG00000038780.14, intron 1 of 17) -56775 ENSMUSG00000038780.14 ENSMUSG00000038780 ENSMUST00000198621 Smurf1 protein_coding Interval_154357 chr8 14951847 14952688 + 0 NA intron (ENSMUSG00000071176.10, intron 2 of 18) protein_coding-intron (ENSMUSG00000071176.10, intron 11 of 28) 6966 ENSMUSG00000071176.10 ENSMUSG00000071176 ENSMUST00000162636 Arhgef10 protein_coding Interval_149225 chr7 96417666 96418363 + 0 NA intron (ENSMUSG00000048078.16, intron 2 of 2) protein_coding-intron (ENSMUSG00000048078.16, intron 2 of 32) 18003 ENSMUSG00000082780.2 ENSMUSG00000082780 ENSMUST00000117302 Rps11-ps5 processed_pseudogene Interval_32990 chr11 113550674 113551660 + 0 NA intron (ENSMUSG00000041654.15, intron 3 of 4) protein_coding-intron (ENSMUSG00000041654.15, intron 3 of 10) 14612 ENSMUSG00000041654.15 ENSMUSG00000041654 ENSMUST00000123153 Slc39a11 protein_coding Interval_48964 chr13 106265471 106266240 + 0 NA Intergenic Intergenic -68084 ENSMUSG00000108515.1 ENSMUSG00000108515 ENSMUST00000205589 Olfr717-ps1 unprocessed_pseudogene Interval_94434 chr2 91202251 91203381 + 0 NA promoter-TSS (ENSMUSG00000002103.16) protein_coding-promoter-TSS (ENSMUSG00000002103.16) -38 ENSMUSG00000086206.1 ENSMUSG00000086206 ENSMUST00000131634 Gm13783 processed_transcript Interval_163800 chr9 26253724 26254126 + 0 NA Intergenic Intergenic 114733 ENSMUSG00000111238.1 ENSMUSG00000111238 ENSMUST00000217552 Gm19113 processed_pseudogene Interval_73838 chr17 44387611 44387857 + 0 NA Intergenic Intergenic -19831 ENSMUSG00000117106.1 ENSMUSG00000117106 ENSMUST00000233110 Gm49872 lincRNA Interval_117029 chr4 119105652 119106143 + 0 NA Intergenic Intergenic -2972 ENSMUSG00000028645.11 ENSMUSG00000028645 ENSMUST00000174372 Slc2a1 protein_coding Interval_157036 chr8 64707332 64707692 + 0 NA intron (ENSMUSG00000110368.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000110368.1, intron 1 of 1) 3564 ENSMUSG00000110368.1 ENSMUSG00000110368 ENSMUST00000210776 Gm45518 lincRNA Interval_122539 chr5 23665662 23666745 + 0 NA intron (ENSMUSG00000062604.11, intron 1 of 3) protein_coding-intron (ENSMUSG00000062604.11, intron 1 of 3) 8178 ENSMUSG00000088359.1 ENSMUSG00000088359 ENSMUST00000157734 Gm24009 rRNA Interval_8832 chr1 151440509 151441166 + 0 NA exon (ENSMUSG00000053286.11, exon 5 of 15) protein_coding-exon (ENSMUSG00000053286.11, exon 5 of 15) -1556 ENSMUSG00000106406.1 ENSMUSG00000106406 ENSMUST00000198467 Mir7682 miRNA Interval_60761 chr15 76601099 76601695 + 0 NA promoter-TSS (ENSMUSG00000034022.8) protein_coding-promoter-TSS (ENSMUSG00000034022.8) 587 ENSMUSG00000034022.8 ENSMUSG00000034022 ENSMUST00000229447 Cpsf1 protein_coding Interval_133525 chr6 6146493 6146991 + 0 NA intron (ENSMUSG00000015112.15, intron 4 of 17) protein_coding-intron (ENSMUSG00000015112.15, intron 4 of 17) 27209 ENSMUSG00000015112.15 ENSMUSG00000015112 ENSMUST00000177698 Slc25a13 protein_coding Interval_59176 chr15 46513196 46513525 + 0 NA Intergenic Intergenic -17211 ENSMUSG00000115177.1 ENSMUSG00000115177 ENSMUST00000228201 4930523O13Rik lincRNA Interval_26562 chr11 58914271 58915232 + 0 NA Intergenic Intergenic -3201 ENSMUSG00000020490.16 ENSMUSG00000020490 ENSMUST00000108818 Btnl10 protein_coding Interval_105720 chr3 88907389 88908763 + 0 NA TTS (ENSMUSG00000068922.14) protein_coding-TTS (ENSMUSG00000068922.14) 1566 ENSMUSG00000065236.1 ENSMUSG00000065236 ENSMUST00000083302 n-R5s197 rRNA Interval_34615 chr12 7977455 7978825 + 0 NA intron (ENSMUSG00000020609.14, intron 1 of 27) protein_coding-intron (ENSMUSG00000020609.14, intron 1 of 27) 492 ENSMUSG00000020609.14 ENSMUSG00000020609 ENSMUST00000171239 Apob protein_coding Interval_12116 chr1 189845675 189846709 + 0 NA exon (ENSMUSG00000026604.17, exon 1 of 2) protein_coding-exon (ENSMUSG00000026604.17, exon 1 of 2) 1149 ENSMUSG00000026604.17 ENSMUSG00000026604 ENSMUST00000148129 Ptpn14 protein_coding Interval_136364 chr6 53801108 53802435 + 0 NA Intergenic Intergenic -16972 ENSMUSG00000108175.1 ENSMUSG00000108175 ENSMUST00000204648 Gm16499 antisense Interval_12765 chr10 5071053 5071484 + 0 NA exon (ENSMUSG00000096553.2, exon 1 of 1) antisense-exon (ENSMUSG00000096553.2, exon 1 of 1) 2073 ENSMUSG00000096553.2 ENSMUSG00000096553 ENSMUST00000238588 Gm10097 antisense Interval_49472 chr13 112286889 112287246 + 0 NA Intergenic Intergenic -1384 ENSMUSG00000049985.15 ENSMUSG00000049985 ENSMUST00000223871 Ankrd55 protein_coding Interval_173801 chrX 104478156 104478554 + 0 NA Intergenic Intergenic -4463 ENSMUSG00000073016.3 ENSMUSG00000073016 ENSMUST00000087867 Uprt protein_coding Interval_93082 chr2 69986435 69986718 + 0 NA intron (ENSMUSG00000044308.17, intron 26 of 38) protein_coding-intron (ENSMUSG00000044308.17, intron 26 of 38) -2210 ENSMUSG00000044308.17 ENSMUSG00000044308 ENSMUST00000123890 Ubr3 protein_coding Interval_120362 chr4 148100332 148102787 + 0 NA exon (ENSMUSG00000029005.4, exon 7 of 7) protein_coding-exon (ENSMUSG00000029005.4, exon 7 of 7) -16783 ENSMUSG00000029007.8 ENSMUSG00000029007 ENSMUST00000137393 Agtrap protein_coding Interval_138094 chr6 85131419 85133085 + 0 NA intron (ENSMUSG00000033735.9, intron 3 of 3) protein_coding-intron (ENSMUSG00000033735.9, intron 3 of 3) 5514 ENSMUSG00000033735.9 ENSMUSG00000033735 ENSMUST00000174286 Spr protein_coding Interval_161060 chr8 117235858 117237029 + 0 NA Intergenic Intergenic 78306 ENSMUSG00000052557.11 ENSMUSG00000052557 ENSMUST00000162997 Gan protein_coding Interval_56609 chr14 120830269 120832563 + 0 NA Intergenic Intergenic 4258 ENSMUSG00000115028.1 ENSMUSG00000115028 ENSMUST00000228417 Gm9391 processed_pseudogene Interval_102343 chr3 22049589 22050436 + 0 NA Intergenic Intergenic 26130 ENSMUSG00000106019.1 ENSMUSG00000106019 ENSMUST00000199072 Gm43672 lincRNA Interval_57178 chr15 7169835 7170048 + 0 NA intron (ENSMUSG00000054263.12, intron 7 of 15) protein_coding-intron (ENSMUSG00000054263.12, intron 7 of 19) 79327 ENSMUSG00000054263.12 ENSMUSG00000054263 ENSMUST00000171588 Lifr protein_coding Interval_74923 chr17 57332338 57332552 + 0 NA Intergenic Intergenic -26254 ENSMUSG00000004730.15 ENSMUSG00000004730 ENSMUST00000004850 Adgre1 protein_coding Interval_102489 chr3 27153416 27155875 + 0 NA promoter-TSS (ENSMUSG00000027699.19) protein_coding-promoter-TSS (ENSMUSG00000027699.19) 619 ENSMUSG00000097584.1 ENSMUSG00000097584 ENSMUST00000181124 1700125G22Rik lincRNA Interval_161126 chr8 117639645 117639940 + 0 NA Intergenic Intergenic 33897 ENSMUSG00000034308.13 ENSMUSG00000034308 ENSMUST00000174450 Sdr42e1 protein_coding Interval_3758 chr1 62884697 62885434 + 0 NA Intergenic Intergenic -52695 ENSMUSG00000100426.1 ENSMUSG00000100426 ENSMUST00000189802 Gm4208 lincRNA Interval_6336 chr1 106004155 106004496 + 0 NA intron (ENSMUSG00000038866.15, intron 1 of 8) protein_coding-intron (ENSMUSG00000038866.15, intron 3 of 13) 188 ENSMUSG00000038866.15 ENSMUSG00000038866 ENSMUST00000131830 Zcchc2 protein_coding Interval_142425 chr6 142003058 142003538 + 0 NA intron (ENSMUSG00000079263.8, intron 4 of 15) protein_coding-intron (ENSMUSG00000079263.8, intron 2 of 13) 8116 ENSMUSG00000079263.8 ENSMUSG00000079263 ENSMUST00000111832 Gm6614 protein_coding Interval_74072 chr17 46428625 46429673 + 0 NA intron (ENSMUSG00000023968.15, intron 1 of 6) protein_coding-intron (ENSMUSG00000023968.15, intron 1 of 7) -1526 ENSMUSG00000023968.15 ENSMUSG00000023968 ENSMUST00000165750 Crip3 protein_coding Interval_54103 chr14 65326273 65327073 + 0 NA intron (ENSMUSG00000114209.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000114209.1, intron 1 of 1) 342 ENSMUSG00000114209.1 ENSMUSG00000114209 ENSMUST00000223901 Gm48433 lincRNA Interval_164182 chr9 32257057 32258211 + 0 NA exon (ENSMUSG00000041444.14, exon 12 of 13) protein_coding-exon (ENSMUSG00000041444.14, exon 12 of 13) 33042 ENSMUSG00000041444.14 ENSMUSG00000041444 ENSMUST00000174730 Arhgap32 protein_coding Interval_163916 chr9 28449188 28449422 + 0 NA intron (ENSMUSG00000062257.13, intron 1 of 2) protein_coding-intron (ENSMUSG00000062257.13, intron 1 of 6) 156557 ENSMUSG00000106021.1 ENSMUSG00000106021 ENSMUST00000199274 Gm44316 miRNA Interval_154201 chr8 13394644 13395001 + 0 NA intron (ENSMUSG00000031449.10, intron 1 of 3) protein_coding-intron (ENSMUSG00000031449.10, intron 1 of 6) 1954 ENSMUSG00000031449.10 ENSMUSG00000031449 ENSMUST00000210491 Atp4b protein_coding Interval_161764 chr8 122624199 122624618 + 0 NA TTS (ENSMUSG00000006362.16) protein_coding-TTS (ENSMUSG00000006362.16) -1674 ENSMUSG00000069867.3 ENSMUSG00000069867 ENSMUST00000212966 Pabpn1l protein_coding Interval_49231 chr13 109676718 109677291 + 0 NA intron (ENSMUSG00000021699.17, intron 1 of 14) protein_coding-intron (ENSMUSG00000021699.17, intron 1 of 14) -226805 ENSMUSG00000084651.1 ENSMUSG00000084651 ENSMUST00000122702 Mir1904 miRNA Interval_19867 chr10 110733290 110733951 + 0 NA Intergenic Intergenic -11845 ENSMUSG00000020185.16 ENSMUSG00000020185 ENSMUST00000174593 E2f7 protein_coding Interval_90625 chr2 31543397 31543817 + 0 NA Intergenic Intergenic 9088 ENSMUSG00000084226.1 ENSMUSG00000084226 ENSMUST00000117887 Gm13426 processed_pseudogene Interval_15301 chr10 44335839 44337029 + 0 NA intron (ENSMUSG00000038160.7, intron 6 of 7) protein_coding-intron (ENSMUSG00000038160.7, intron 6 of 7) -23242 ENSMUSG00000089260.1 ENSMUSG00000089260 ENSMUST00000158635 Mir1929 miRNA Interval_129688 chr5 121766521 121767092 + 0 NA intron (ENSMUSG00000042605.16, intron 5 of 9) protein_coding-intron (ENSMUSG00000042605.16, intron 5 of 24) 24389 ENSMUSG00000105179.1 ENSMUSG00000105179 ENSMUST00000195919 Gm42866 TEC Interval_125887 chr5 75435504 75436105 + 0 NA Intergenic Intergenic -36432 ENSMUSG00000107386.1 ENSMUSG00000107386 ENSMUST00000202494 Gm42800 lincRNA Interval_143013 chr6 148371103 148371600 + 0 NA intron (ENSMUSG00000030306.14, intron 5 of 16) protein_coding-intron (ENSMUSG00000030306.14, intron 5 of 19) -6695 ENSMUSG00000108035.1 ENSMUSG00000108035 ENSMUST00000203055 Gm44021 TEC Interval_136179 chr6 51795312 51795610 + 0 NA Intergenic Intergenic 76468 ENSMUSG00000059182.7 ENSMUSG00000059182 ENSMUST00000203313 Skap2 protein_coding Interval_72866 chr17 32770326 32772334 + 0 NA exon (ENSMUSG00000024298.15, exon 4 of 4) protein_coding-exon (ENSMUSG00000024298.15, exon 4 of 4) 16920 ENSMUSG00000024298.15 ENSMUSG00000024298 ENSMUST00000168337 Zfp871 protein_coding Interval_82812 chr18 77162343 77163092 + 0 NA Intergenic Intergenic 23646 ENSMUSG00000073532.3 ENSMUSG00000073532 ENSMUST00000097520 Gm7276 bidirectional_promoter_lncRNA Interval_4340 chr1 72813121 72814170 + 0 NA Intergenic Intergenic -35054 ENSMUSG00000039323.18 ENSMUSG00000039323 ENSMUST00000155703 Igfbp2 protein_coding Interval_160914 chr8 114978624 114979159 + 0 NA intron (ENSMUSG00000004637.15, intron 8 of 8) protein_coding-intron (ENSMUSG00000004637.15, intron 8 of 8) 74022 ENSMUSG00000088428.1 ENSMUSG00000088428 ENSMUST00000157803 Gm22556 rRNA Interval_164748 chr9 41044501 41044889 + 0 NA intron (ENSMUSG00000032020.15, intron 4 of 13) protein_coding-intron (ENSMUSG00000032020.15, intron 4 of 13) 34811 ENSMUSG00000032020.15 ENSMUSG00000032020 ENSMUST00000132996 Ubash3b protein_coding Interval_36487 chr12 45962284 45963268 + 0 NA Intergenic Intergenic -21567 ENSMUSG00000064800.1 ENSMUSG00000064800 ENSMUST00000082866 Gm24948 snoRNA Interval_17764 chr10 79950622 79950826 + 0 NA exon (ENSMUSG00000019564.12, exon 7 of 9) protein_coding-exon (ENSMUSG00000019564.12, exon 7 of 9) 4445 ENSMUSG00000019564.12 ENSMUSG00000019564 ENSMUST00000135005 Arid3a protein_coding Interval_142339 chr6 140706278 140707824 + 0 NA Intergenic Intergenic -22233 ENSMUSG00000079264.1 ENSMUSG00000079264 ENSMUST00000111844 Gm11077 protein_coding Interval_170526 chr9 108524612 108525569 + 0 NA intron (ENSMUSG00000006673.14, intron 2 of 2) protein_coding-intron (ENSMUSG00000006673.14, intron 2 of 10) -5742 ENSMUSG00000103621.1 ENSMUSG00000103621 ENSMUST00000193127 Gm38366 TEC Interval_105846 chr3 89686038 89686390 + 0 NA Intergenic Intergenic 23696 ENSMUSG00000000794.9 ENSMUSG00000000794 ENSMUST00000124584 Kcnn3 protein_coding Interval_122705 chr5 24780026 24781430 + 0 NA Intergenic Intergenic -29404 ENSMUSG00000038135.4 ENSMUSG00000038135 ENSMUST00000047119 Crygn protein_coding Interval_96796 chr2 128339198 128340816 + 0 NA intron (ENSMUSG00000074813.14, intron 1 of 4) lincRNA-intron (ENSMUSG00000074813.14, intron 1 of 3) -83647 ENSMUSG00000079053.3 ENSMUSG00000079053 ENSMUST00000131961 Gm14010 lincRNA Interval_29924 chr11 87778061 87779358 + 0 NA promoter-TSS (ENSMUSG00000034156.16) protein_coding-promoter-TSS (ENSMUSG00000034156.16) -2866 ENSMUSG00000034156.16 ENSMUSG00000034156 ENSMUST00000154758 Tspoap1 protein_coding Interval_116673 chr4 116599171 116599465 + 0 NA TTS (ENSMUSG00000034035.18) protein_coding-TTS (ENSMUSG00000034035.18) 1558 ENSMUSG00000034035.18 ENSMUSG00000034035 ENSMUST00000148260 Ccdc17 protein_coding Interval_146335 chr7 45386178 45387076 + 0 NA TTS (ENSMUSG00000063511.11) protein_coding-TTS (ENSMUSG00000063511.11) -1904 ENSMUSG00000084519.1 ENSMUSG00000084519 ENSMUST00000122570 Gm22478 snoRNA Interval_77699 chr17 94442087 94442308 + 0 NA Intergenic Intergenic -113334 ENSMUSG00000077433.1 ENSMUSG00000077433 ENSMUST00000104245 Gm22593 snRNA Interval_16221 chr10 61517448 61517828 + 0 NA intron (ENSMUSG00000037151.8, intron 2 of 4) protein_coding-intron (ENSMUSG00000037151.8, intron 2 of 4) -7053 ENSMUSG00000112710.1 ENSMUSG00000112710 ENSMUST00000219782 Gm17829 processed_pseudogene Interval_79032 chr18 24069846 24071767 + 0 NA Intergenic Intergenic 11118 ENSMUSG00000117500.1 ENSMUSG00000117500 ENSMUST00000234749 Gm18085 processed_pseudogene Interval_10472 chr1 171189389 171190355 + 0 NA intron (ENSMUSG00000038370.6, intron 1 of 2) protein_coding-intron (ENSMUSG00000038370.6, intron 1 of 2) 6396 ENSMUSG00000038370.6 ENSMUSG00000038370 ENSMUST00000111332 Pcp4l1 protein_coding Interval_136541 chr6 55379596 55380221 + 0 NA intron (ENSMUSG00000004654.6, intron 4 of 4) protein_coding-intron (ENSMUSG00000004654.6, intron 4 of 12) 3613 ENSMUSG00000004654.6 ENSMUSG00000004654 ENSMUST00000203241 Ghrhr protein_coding Interval_103562 chr3 49643846 49644401 + 0 NA TTS (ENSMUSG00000103568.1) processed_pseudogene-TTS (ENSMUSG00000103568.1) 416 ENSMUSG00000103568.1 ENSMUSG00000103568 ENSMUST00000192667 Gm29741 processed_pseudogene Interval_88866 chr2 11821122 11821491 + 0 NA Intergenic Intergenic 38017 ENSMUSG00000047909.11 ENSMUSG00000047909 ENSMUST00000142622 Ankrd16 protein_coding Interval_143073 chr6 149076691 149077667 + 0 NA intron (ENSMUSG00000030313.15, intron 2 of 13) protein_coding-intron (ENSMUSG00000030313.15, intron 2 of 20) -3073 ENSMUSG00000065198.1 ENSMUSG00000065198 ENSMUST00000083264 Gm23462 snRNA Interval_81502 chr18 61220076 61220315 + 0 NA promoter-TSS (ENSMUSG00000024575.16) protein_coding-promoter-TSS (ENSMUSG00000024575.16) -8838 ENSMUSG00000034320.14 ENSMUSG00000034320 ENSMUST00000181997 Slc26a2 protein_coding Interval_153062 chr7 141130676 141131915 + 0 NA promoter-TSS (ENSMUSG00000025495.15) protein_coding-promoter-TSS (ENSMUSG00000025495.15) -1155 ENSMUSG00000025495.15 ENSMUSG00000025495 ENSMUST00000209928 Ptdss2 protein_coding Interval_14200 chr10 28725127 28725675 + 0 NA intron (ENSMUSG00000049109.15, intron 2 of 2) protein_coding-intron (ENSMUSG00000049109.15, intron 2 of 5) -12024 ENSMUSG00000049109.15 ENSMUSG00000049109 ENSMUST00000219119 Themis protein_coding Interval_47432 chr13 84103367 84103807 + 0 NA Intergenic Intergenic -38815 ENSMUSG00000098087.1 ENSMUSG00000098087 ENSMUST00000182477 Gm17750 lincRNA Interval_23976 chr11 29130224 29131405 + 0 NA promoter-TSS (ENSMUSG00000020464.15) protein_coding-promoter-TSS (ENSMUSG00000020464.15) 70 ENSMUSG00000020464.15 ENSMUSG00000020464 ENSMUST00000131527 Pnpt1 protein_coding Interval_115023 chr4 88653718 88654409 + 0 NA Intergenic Intergenic -4759 ENSMUSG00000081784.1 ENSMUSG00000081784 ENSMUST00000120871 Gm13281 unprocessed_pseudogene Interval_99341 chr2 159646023 159646336 + 0 NA Intergenic Intergenic 132028 ENSMUSG00000083451.1 ENSMUSG00000083451 ENSMUST00000119101 Gm11445 processed_pseudogene Interval_12066 chr1 189390556 189390859 + 0 NA intron (ENSMUSG00000037624.15, intron 1 of 6) protein_coding-intron (ENSMUSG00000037624.15, intron 1 of 5) -2643 ENSMUSG00000093791.1 ENSMUSG00000093791 ENSMUST00000180257 Gm24092 miRNA Interval_112172 chr4 35167791 35168173 + 0 NA Intergenic Intergenic -10498 ENSMUSG00000073910.10 ENSMUSG00000073910 ENSMUST00000155725 Mob3b protein_coding Interval_31107 chr11 98171918 98172194 + 0 NA intron (ENSMUSG00000018160.15, intron 3 of 5) protein_coding-intron (ENSMUSG00000018160.15, intron 7 of 16) -11034 ENSMUSG00000018160.15 ENSMUSG00000018160 ENSMUST00000129557 Med1 protein_coding Interval_20143 chr10 115236917 115237535 + 0 NA intron (ENSMUSG00000020130.9, intron 3 of 4) protein_coding-intron (ENSMUSG00000020130.9, intron 3 of 16) 14027 ENSMUSG00000020130.9 ENSMUSG00000020130 ENSMUST00000219274 Tbc1d15 protein_coding Interval_56765 chr14 121923666 121924159 + 0 NA intron (ENSMUSG00000041765.6, intron 1 of 3) protein_coding-intron (ENSMUSG00000041765.6, intron 4 of 8) -8131 ENSMUSG00000050350.8 ENSMUSG00000050350 ENSMUST00000055475 Gpr18 protein_coding Interval_70669 chr17 12931323 12932788 + 0 NA intron (ENSMUSG00000062480.12, intron 4 of 9) protein_coding-intron (ENSMUSG00000062480.12, intron 3 of 8) -4373 ENSMUSG00000062480.12 ENSMUSG00000062480 ENSMUST00000160921 Acat3 protein_coding Interval_34981 chr12 16277603 16278524 + 0 NA intron (ENSMUSG00000113586.1, intron 4 of 5) lincRNA-intron (ENSMUSG00000113586.1, intron 4 of 5) -45836 ENSMUSG00000113892.1 ENSMUSG00000113892 ENSMUST00000220475 Gm48605 lincRNA Interval_5506 chr1 89406201 89407077 + 0 NA promoter-TSS (ENSMUSG00000099938.1) lincRNA-promoter-TSS (ENSMUSG00000099938.1) -506 ENSMUSG00000099938.1 ENSMUSG00000099938 ENSMUST00000186258 C030007H22Rik lincRNA Interval_164742 chr9 40982646 40982915 + 0 NA intron (ENSMUSG00000032021.14, intron 6 of 9) protein_coding-intron (ENSMUSG00000032021.14, intron 6 of 9) 21806 ENSMUSG00000032021.14 ENSMUSG00000032021 ENSMUST00000034519 Crtam protein_coding Interval_75942 chr17 73301297 73302688 + 0 NA Intergenic Intergenic 49447 ENSMUSG00000117292.1 ENSMUSG00000117292 ENSMUST00000233479 E330032C10Rik lincRNA Interval_106898 chr3 101701400 101701956 + 0 NA Intergenic Intergenic 9889 ENSMUSG00000106070.1 ENSMUSG00000106070 ENSMUST00000196442 Gm43135 lincRNA Interval_34198 chr11 121228753 121229707 + 0 NA promoter-TSS (ENSMUSG00000039294.14) protein_coding-promoter-TSS (ENSMUSG00000039294.14) 5 ENSMUSG00000039294.14 ENSMUSG00000039294 ENSMUST00000156214 Cybc1 protein_coding Interval_164062 chr9 31240695 31241500 + 0 NA Intergenic Intergenic -33724 ENSMUSG00000091003.2 ENSMUSG00000091003 ENSMUST00000164658 Gm7244 processed_pseudogene Interval_25115 chr11 44237682 44238996 + 0 NA Intergenic Intergenic 28870 ENSMUSG00000086738.1 ENSMUSG00000086738 ENSMUST00000145584 Gm12154 lincRNA Interval_13908 chr10 24557175 24558875 + 0 NA intron (ENSMUSG00000087400.8, intron 3 of 3) processed_transcript-intron (ENSMUSG00000087400.8, intron 3 of 3) -7685 ENSMUSG00000087400.8 ENSMUSG00000087400 ENSMUST00000125158 Gm15270 processed_transcript Interval_38037 chr12 74374226 74374586 + 0 NA Intergenic Intergenic 28065 ENSMUSG00000113022.1 ENSMUSG00000113022 ENSMUST00000223349 Gm9544 processed_pseudogene Interval_119121 chr4 135681681 135682042 + 0 NA Intergenic Intergenic -4426 ENSMUSG00000062157.6 ENSMUSG00000062157 ENSMUST00000074408 Ifnlr1 protein_coding Interval_151797 chr7 126729814 126730218 + 0 NA Intergenic Intergenic 6080 ENSMUSG00000108357.1 ENSMUSG00000108357 ENSMUST00000205464 Snrp1c-ps1 processed_pseudogene Interval_142856 chr6 146475089 146475478 + 0 NA intron (ENSMUSG00000030287.15, intron 1 of 18) protein_coding-intron (ENSMUSG00000030287.15, intron 2 of 56) -11676 ENSMUSG00000082120.1 ENSMUSG00000082120 ENSMUST00000117133 Gm15720 processed_pseudogene Interval_118024 chr4 128317656 128318254 + 0 NA intron (ENSMUSG00000028804.20, intron 10 of 70) protein_coding-intron (ENSMUSG00000028804.20, intron 10 of 12) 56911 ENSMUSG00000085717.1 ENSMUSG00000085717 ENSMUST00000131581 Hmgb4os antisense Interval_132167 chr5 143049727 143051215 + 0 NA promoter-TSS (ENSMUSG00000106543.1) sense_intronic-promoter-TSS (ENSMUSG00000106543.1) -428 ENSMUSG00000106543.1 ENSMUSG00000106543 ENSMUST00000199336 Gm43378 sense_intronic Interval_142232 chr6 139544653 139544832 + 0 NA Intergenic Intergenic 12869 ENSMUSG00000107679.1 ENSMUSG00000107679 ENSMUST00000203246 4930404I20Rik lincRNA Interval_120901 chr4 151424688 151425534 + 0 NA intron (ENSMUSG00000014592.21, intron 5 of 24) protein_coding-intron (ENSMUSG00000014592.21, intron 5 of 23) 48641 ENSMUSG00000085593.1 ENSMUSG00000085593 ENSMUST00000129097 4930589P08Rik antisense Interval_19109 chr10 94622964 94624070 + 0 NA intron (ENSMUSG00000112477.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000112477.1, intron 1 of 1) 2977 ENSMUSG00000112477.1 ENSMUSG00000112477 ENSMUST00000219287 Gm48657 lincRNA Interval_116291 chr4 109392095 109392362 + 0 NA Intergenic Intergenic 11984 ENSMUSG00000085873.1 ENSMUSG00000085873 ENSMUST00000150239 Ttc39aos1 antisense Interval_84514 chr19 12009209 12012541 + 0 NA Intergenic Intergenic -9300 ENSMUSG00000109030.1 ENSMUSG00000109030 ENSMUST00000208900 Olfr1421-ps1 unprocessed_pseudogene Interval_163825 chr9 26934727 26935492 + 0 NA Intergenic Intergenic -12028 ENSMUSG00000079644.2 ENSMUSG00000079644 ENSMUST00000214461 Gm1110 protein_coding Interval_2423 chr1 39206709 39207691 + 0 NA intron (ENSMUSG00000026077.15, intron 1 of 20) protein_coding-intron (ENSMUSG00000026077.15, intron 1 of 20) 13469 ENSMUSG00000026077.15 ENSMUSG00000026077 ENSMUST00000172825 Npas2 protein_coding Interval_14913 chr10 41028177 41028367 + 0 NA Intergenic Intergenic -6923 ENSMUSG00000111098.1 ENSMUSG00000111098 ENSMUST00000214667 Gm48057 lincRNA Interval_109975 chr3 152261805 152262223 + 0 NA promoter-TSS (ENSMUSG00000039103.12) protein_coding-promoter-TSS (ENSMUSG00000039103.12) 3754 ENSMUSG00000039103.12 ENSMUSG00000039103 ENSMUST00000199752 Nexn protein_coding Interval_5208 chr1 86455696 86456020 + 0 NA Intergenic Intergenic -17801 ENSMUSG00000101328.1 ENSMUSG00000101328 ENSMUST00000163337 Rpl30-ps6 processed_pseudogene Interval_121947 chr5 12001023 12001433 + 0 NA Intergenic Intergenic 73606 ENSMUSG00000105171.1 ENSMUSG00000105171 ENSMUST00000198323 Gm5288 processed_pseudogene Interval_173537 chrX 99017067 99018393 + 0 NA intron (ENSMUSG00000031216.13, intron 2 of 5) protein_coding-intron (ENSMUSG00000031216.13, intron 2 of 5) 14482 ENSMUSG00000031216.13 ENSMUSG00000031216 ENSMUST00000127361 Stard8 protein_coding Interval_106895 chr3 101653539 101653749 + 0 NA Intergenic Intergenic -38145 ENSMUSG00000106070.1 ENSMUSG00000106070 ENSMUST00000196442 Gm43135 lincRNA Interval_126803 chr5 93043944 93045837 + 0 NA exon (ENSMUSG00000045314.5, exon 1 of 1) protein_coding-exon (ENSMUSG00000045314.5, exon 1 of 1) 132 ENSMUSG00000045314.5 ENSMUSG00000045314 ENSMUST00000061328 Sowahb protein_coding Interval_151203 chr7 119545114 119545942 + 0 NA TTS (ENSMUSG00000030972.6) protein_coding-TTS (ENSMUSG00000030972.6) -16184 ENSMUSG00000030945.17 ENSMUSG00000030945 ENSMUST00000207977 Acsm2 protein_coding Interval_108179 chr3 122211576 122212176 + 0 NA intron (ENSMUSG00000104887.1, intron 5 of 5) unprocessed_pseudogene-intron (ENSMUSG00000104887.1, intron 5 of 5) 15494 ENSMUSG00000104887.1 ENSMUSG00000104887 ENSMUST00000198484 Gm43158 unprocessed_pseudogene Interval_32633 chr11 109311879 109312719 + 0 NA Intergenic Intergenic -34540 ENSMUSG00000099630.1 ENSMUSG00000099630 ENSMUST00000190043 1700096J18Rik lincRNA Interval_108344 chr3 124598057 124598264 + 0 NA Intergenic Intergenic -9003 ENSMUSG00000106009.1 ENSMUSG00000106009 ENSMUST00000196790 Gm9379 processed_pseudogene Interval_127332 chr5 103107760 103107980 + 0 NA intron (ENSMUSG00000046709.18, intron 2 of 13) protein_coding-intron (ENSMUSG00000046709.18, intron 2 of 13) 103464 ENSMUSG00000046709.18 ENSMUSG00000046709 ENSMUST00000136595 Mapk10 protein_coding Interval_89945 chr2 26634269 26636555 + 0 NA TTS (ENSMUSG00000036186.5) protein_coding-TTS (ENSMUSG00000036186.5) 2562 ENSMUSG00000064858.2 ENSMUSG00000064858 ENSMUST00000082924 Snora43 snoRNA Interval_110506 chr4 3366746 3366990 + 0 NA Intergenic Intergenic -19978 ENSMUSG00000083489.1 ENSMUSG00000083489 ENSMUST00000118568 Gm11784 unprocessed_pseudogene Interval_87841 chr19 56409835 56410783 + 0 NA intron (ENSMUSG00000025076.11, intron 2 of 6) protein_coding-intron (ENSMUSG00000025076.11, intron 2 of 6) -15376 ENSMUSG00000025076.11 ENSMUSG00000025076 ENSMUST00000237765 Casp7 protein_coding Interval_82801 chr18 77116935 77118644 + 0 NA intron (ENSMUSG00000025423.16, intron 3 of 14) protein_coding-intron (ENSMUSG00000025423.16, intron 3 of 12) 52544 ENSMUSG00000025423.16 ENSMUSG00000025423 ENSMUST00000168882 Pias2 protein_coding Interval_46713 chr13 69565452 69565768 + 0 NA intron (ENSMUSG00000021595.18, intron 2 of 2) protein_coding-intron (ENSMUSG00000021595.18, intron 1 of 3) -21587 ENSMUSG00000051805.1 ENSMUSG00000051805 ENSMUST00000070942 A530095I07Rik antisense Interval_120145 chr4 143013600 143014271 + 0 NA intron (ENSMUSG00000110067.2, intron 1 of 1) protein_coding-intron (ENSMUSG00000110067.2, intron 1 of 2) 59831 ENSMUSG00000110067.2 ENSMUSG00000110067 ENSMUST00000238915 6330411D24Rik protein_coding Interval_31218 chr11 98962641 98964784 + 0 NA intron (ENSMUSG00000037992.16, intron 1 of 7) protein_coding-intron (ENSMUSG00000037992.16, intron 3 of 9) 17268 ENSMUSG00000064491.1 ENSMUSG00000064491 ENSMUST00000082557 Gm22061 snRNA Interval_85797 chr19 31746808 31747015 + 0 NA intron (ENSMUSG00000052920.16, intron 1 of 2) protein_coding-intron (ENSMUSG00000052920.16, intron 1 of 17) -121870 ENSMUSG00000052595.8 ENSMUSG00000052595 ENSMUST00000225165 A1cf protein_coding Interval_129473 chr5 120431075 120432820 + 0 NA promoter-TSS (ENSMUSG00000098649.2) antisense-promoter-TSS (ENSMUSG00000098649.2) -180 ENSMUSG00000098649.2 ENSMUSG00000098649 ENSMUST00000185026 Gm27199 antisense Interval_109468 chr3 142712788 142712980 + 0 NA intron (ENSMUSG00000040213.13, intron 2 of 13) protein_coding-intron (ENSMUSG00000040213.13, intron 2 of 13) 11798 ENSMUSG00000040213.13 ENSMUSG00000040213 ENSMUST00000128096 Kyat3 protein_coding Interval_33951 chr11 119624929 119625172 + 0 NA intron (ENSMUSG00000025583.15, intron 1 of 32) protein_coding-intron (ENSMUSG00000025583.15, intron 1 of 33) 21580 ENSMUSG00000083870.1 ENSMUSG00000083870 ENSMUST00000121392 Gm11761 processed_pseudogene Interval_34761 chr12 10437617 10438553 + 0 NA Intergenic Intergenic -8303 ENSMUSG00000112792.1 ENSMUSG00000112792 ENSMUST00000218017 Gm38407 lincRNA Interval_134339 chr6 25766245 25767861 + 0 NA intron (ENSMUSG00000029676.15, intron 5 of 14) protein_coding-intron (ENSMUSG00000029676.15, intron 8 of 9) 30964 ENSMUSG00000029676.15 ENSMUSG00000029676 ENSMUST00000147970 Pot1a protein_coding Interval_122787 chr5 25497715 25500218 + 0 NA promoter-TSS (ENSMUSG00000038056.15) protein_coding-promoter-TSS (ENSMUSG00000038056.15) -11899 ENSMUSG00000077387.1 ENSMUSG00000077387 ENSMUST00000104199 Gm22656 snRNA Interval_45596 chr13 56151550 56152997 + 0 NA Intergenic Intergenic -15327 ENSMUSG00000077799.1 ENSMUSG00000077799 ENSMUST00000104611 Gm25148 snoRNA Interval_47474 chr13 84986215 84986757 + 0 NA Intergenic Intergenic -12169 ENSMUSG00000114338.1 ENSMUSG00000114338 ENSMUST00000225386 Gm4059 processed_pseudogene Interval_146662 chr7 49257547 49257922 + 0 NA intron (ENSMUSG00000052512.17, intron 1 of 10) protein_coding-intron (ENSMUSG00000052512.17, intron 1 of 37) 62193 ENSMUSG00000103834.1 ENSMUSG00000103834 ENSMUST00000195677 Gm37613 TEC Interval_59747 chr15 59010501 59011415 + 0 NA intron (ENSMUSG00000022353.10, intron 3 of 14) protein_coding-intron (ENSMUSG00000022353.10, intron 3 of 14) 26822 ENSMUSG00000115062.1 ENSMUSG00000115062 ENSMUST00000226216 4930544F09Rik antisense Interval_56096 chr14 105673256 105673552 + 0 NA Intergenic Intergenic -8425 ENSMUSG00000060143.7 ENSMUSG00000060143 ENSMUST00000227553 Gm10076 lincRNA Interval_12684 chr10 4313400 4313882 + 0 NA intron (ENSMUSG00000038587.10, intron 1 of 3) protein_coding-intron (ENSMUSG00000038587.10, intron 1 of 3) -20904 ENSMUSG00000038587.10 ENSMUSG00000038587 ENSMUST00000215696 Akap12 protein_coding Interval_13141 chr10 12364054 12364265 + 0 NA TTS (ENSMUSG00000065096.1) snRNA-TTS (ENSMUSG00000065096.1) 749 ENSMUSG00000065096.1 ENSMUSG00000065096 ENSMUST00000083162 Gm23680 snRNA Interval_145509 chr7 35295604 35295915 + 0 NA intron (ENSMUSG00000063808.14, intron 10 of 20) protein_coding-intron (ENSMUSG00000063808.14, intron 10 of 19) -10440 ENSMUSG00000063808.14 ENSMUSG00000063808 ENSMUST00000153778 Gpatch1 protein_coding Interval_64148 chr16 8723307 8725137 + 0 NA intron (ENSMUSG00000022710.17, intron 2 of 31) protein_coding-intron (ENSMUSG00000022710.17, intron 1 of 30) -25690 ENSMUSG00000022710.17 ENSMUSG00000022710 ENSMUST00000159509 Usp7 protein_coding Interval_128674 chr5 114647008 114647967 + 0 NA intron (ENSMUSG00000014158.12, intron 1 of 15) protein_coding-intron (ENSMUSG00000014158.12, intron 1 of 15) -2588 ENSMUSG00000014158.12 ENSMUSG00000014158 ENSMUST00000212469 Trpv4 protein_coding Interval_95545 chr2 112126969 112127308 + 0 NA exon (ENSMUSG00000109801.2, exon 3 of 3) protein_coding-exon (ENSMUSG00000109801.2, exon 3 of 3) 7839 ENSMUSG00000109801.2 ENSMUSG00000109801 ENSMUST00000099596 Olfr1316 protein_coding Interval_65465 chr16 22486550 22488760 + 0 NA intron (ENSMUSG00000022861.17, intron 22 of 24) protein_coding-intron (ENSMUSG00000022861.17, intron 21 of 23) -23825 ENSMUSG00000089874.1 ENSMUSG00000089874 ENSMUST00000159309 9230117E06Rik antisense Interval_156084 chr8 43895296 43895924 + 0 NA Intergenic Intergenic 18994 ENSMUSG00000109993.1 ENSMUSG00000109993 ENSMUST00000209295 Gm45659 lincRNA Interval_169931 chr9 103029221 103030473 + 0 NA intron (ENSMUSG00000032548.14, intron 1 of 13) protein_coding-intron (ENSMUSG00000032548.14, intron 1 of 13) -7381 ENSMUSG00000077438.1 ENSMUSG00000077438 ENSMUST00000104250 Gm22595 snoRNA Interval_102488 chr3 27145929 27146499 + 0 NA intron (ENSMUSG00000027699.19, intron 1 of 2) protein_coding-intron (ENSMUSG00000027699.19, intron 4 of 18) 987 ENSMUSG00000027699.19 ENSMUSG00000027699 ENSMUST00000175857 Ect2 protein_coding Interval_23938 chr11 28598469 28599352 + 0 NA Intergenic Intergenic -82654 ENSMUSG00000084966.1 ENSMUSG00000084966 ENSMUST00000146554 2810471M01Rik lincRNA Interval_28455 chr11 76016056 76016294 + 0 NA Intergenic Intergenic 11607 ENSMUSG00000020846.6 ENSMUSG00000020846 ENSMUST00000021207 Rflnb protein_coding Interval_167689 chr9 71990420 71990915 + 0 NA exon (ENSMUSG00000104469.1, exon 1 of 1) TEC-exon (ENSMUSG00000104469.1, exon 1 of 1) 604 ENSMUSG00000104469.1 ENSMUSG00000104469 ENSMUST00000191887 Gm37663 TEC Interval_106940 chr3 102067231 102067700 + 0 NA promoter-TSS (ENSMUSG00000104930.1) processed_pseudogene-promoter-TSS (ENSMUSG00000104930.1) -585 ENSMUSG00000104930.1 ENSMUSG00000104930 ENSMUST00000199964 Gm43243 processed_pseudogene Interval_3510 chr1 59175648 59176724 + 0 NA intron (ENSMUSG00000026024.14, intron 25 of 33) protein_coding-intron (ENSMUSG00000026024.14, intron 25 of 33) -17518 ENSMUSG00000079550.9 ENSMUSG00000079550 ENSMUST00000186790 Mpp4 protein_coding Interval_132908 chr5 148680462 148680681 + 0 NA Intergenic Intergenic -30895 ENSMUSG00000106733.1 ENSMUSG00000106733 ENSMUST00000200820 Gm36186 lincRNA Interval_40077 chr12 101028498 101029865 + 0 NA promoter-TSS (ENSMUSG00000021182.16) protein_coding-promoter-TSS (ENSMUSG00000021182.16) -7413 ENSMUSG00000080575.2 ENSMUSG00000080575 ENSMUST00000116925 Mir1190 miRNA Interval_121048 chr4 152430155 152430688 + 0 NA intron (ENSMUSG00000028931.12, intron 3 of 3) protein_coding-intron (ENSMUSG00000028931.12, intron 2 of 14) 19621 ENSMUSG00000090057.1 ENSMUSG00000090057 ENSMUST00000161416 Gm16333 antisense Interval_61080 chr15 79116592 79117587 + 0 NA TTS (ENSMUSG00000033039.10) protein_coding-TTS (ENSMUSG00000033039.10) -14597 ENSMUSG00000033039.10 ENSMUSG00000033039 ENSMUST00000230202 Micall1 protein_coding Interval_163212 chr9 18333572 18334135 + 0 NA intron (ENSMUSG00000043943.14, intron 18 of 21) protein_coding-intron (ENSMUSG00000043943.14, intron 17 of 20) -33202 ENSMUSG00000110816.1 ENSMUSG00000110816 ENSMUST00000217524 Gm19178 processed_pseudogene Interval_121592 chr5 3692075 3692713 + 0 NA exon (ENSMUSG00000040351.11, exon 20 of 20) protein_coding-exon (ENSMUSG00000040351.11, exon 20 of 20) -3570 ENSMUSG00000092698.1 ENSMUSG00000092698 ENSMUST00000174957 Gm22926 miRNA Interval_147076 chr7 60973906 60974566 + 0 NA Intergenic Intergenic -12851 ENSMUSG00000108867.1 ENSMUSG00000108867 ENSMUST00000208542 Gm44643 lincRNA Interval_118311 chr4 130215125 130215526 + 0 NA exon (ENSMUSG00000023120.9, exon 7 of 10) protein_coding-exon (ENSMUSG00000023120.9, exon 7 of 10) -5469 ENSMUSG00000023120.9 ENSMUSG00000023120 ENSMUST00000023884 Ldc1 protein_coding Interval_7567 chr1 132254228 132254729 + 0 NA intron (ENSMUSG00000079330.9, intron 4 of 4) protein_coding-intron (ENSMUSG00000079330.9, intron 3 of 3) -24711 ENSMUSG00000066936.4 ENSMUSG00000066936 ENSMUST00000086544 Gm10188 protein_coding Interval_128426 chr5 113265427 113266340 + 0 NA TTS (ENSMUSG00000042216.13) protein_coding-TTS (ENSMUSG00000042216.13) 13453 ENSMUSG00000042216.13 ENSMUSG00000042216 ENSMUST00000140981 Sgsm1 protein_coding Interval_151152 chr7 118841959 118842742 + 0 NA TTS (ENSMUSG00000030982.19) protein_coding-TTS (ENSMUSG00000030982.19) 9785 ENSMUSG00000077667.1 ENSMUSG00000077667 ENSMUST00000104479 Gm26147 snoRNA Interval_97196 chr2 132183556 132184043 + 0 NA intron (ENSMUSG00000086756.1, intron 2 of 2) antisense-intron (ENSMUSG00000086756.1, intron 2 of 2) 39266 ENSMUSG00000086756.1 ENSMUSG00000086756 ENSMUST00000131603 Gm14051 antisense Interval_90858 chr2 33006749 33007558 + 0 NA exon (ENSMUSG00000038860.15, exon 1 of 2) protein_coding-exon (ENSMUSG00000038860.15, exon 1 of 2) -4838 ENSMUSG00000104277.1 ENSMUSG00000104277 ENSMUST00000193214 Gm38299 TEC Interval_42686 chr13 17956599 17957021 + 0 NA Intergenic Intergenic 4606 ENSMUSG00000114077.1 ENSMUSG00000114077 ENSMUST00000221430 Gm48776 transcribed_processed_pseudogene Interval_126952 chr5 98253896 98256628 + 0 NA intron (ENSMUSG00000029337.2, intron 1 of 1) protein_coding-intron (ENSMUSG00000029337.2, intron 1 of 2) 850 ENSMUSG00000029337.2 ENSMUSG00000029337 ENSMUST00000200059 Fgf5 protein_coding Interval_81859 chr18 65415879 65417775 + 0 NA Intergenic Intergenic 1828 ENSMUSG00000118078.1 ENSMUSG00000118078 ENSMUST00000237179 Gm50228 lincRNA Interval_174708 chrX 163898779 163900084 + 0 NA Intergenic Intergenic -11970 ENSMUSG00000031367.15 ENSMUSG00000031367 ENSMUST00000140845 Ap1s2 protein_coding Interval_37925 chr12 73081863 73082125 + 0 NA Intergenic Intergenic 31462 ENSMUSG00000034460.9 ENSMUSG00000034460 ENSMUST00000175693 Six4 protein_coding Interval_130672 chr5 129641662 129641963 + 0 NA Intergenic Intergenic -17941 ENSMUSG00000057244.6 ENSMUSG00000057244 ENSMUST00000079261 Gm6139 processed_pseudogene Interval_62919 chr15 97914376 97915425 + 0 NA Intergenic Intergenic -4270 ENSMUSG00000022479.15 ENSMUSG00000022479 ENSMUST00000173611 Vdr protein_coding Interval_153890 chr8 10760809 10761600 + 0 NA intron (ENSMUSG00000109271.1, intron 2 of 3) lincRNA-intron (ENSMUSG00000109271.1, intron 2 of 3) 22314 ENSMUSG00000109271.1 ENSMUSG00000109271 ENSMUST00000207553 Gm39129 lincRNA Interval_23188 chr11 20431920 20432384 + 0 NA Intergenic Intergenic -14260 ENSMUSG00000083878.3 ENSMUSG00000083878 ENSMUST00000119032 Gm12034 processed_pseudogene Interval_66594 chr16 35488847 35491135 + 0 NA intron (ENSMUSG00000022844.8, intron 1 of 8) protein_coding-intron (ENSMUSG00000022844.8, intron 1 of 16) 19428 ENSMUSG00000099429.1 ENSMUSG00000099429 ENSMUST00000187829 1600019K03Rik lincRNA Interval_50807 chr14 19959479 19960301 + 0 NA intron (ENSMUSG00000043004.13, intron 3 of 5) protein_coding-intron (ENSMUSG00000043004.13, intron 3 of 5) 17294 ENSMUSG00000043004.13 ENSMUSG00000043004 ENSMUST00000161247 Gng2 protein_coding Interval_87018 chr19 45567751 45568767 + 0 NA intron (ENSMUSG00000041035.9, intron 3 of 6) protein_coding-intron (ENSMUSG00000041035.9, intron 2 of 5) -6915 ENSMUSG00000041035.9 ENSMUSG00000041035 ENSMUST00000161373 Gm17018 protein_coding Interval_16090 chr10 60668179 60669171 + 0 NA intron (ENSMUSG00000012819.15, intron 2 of 7) protein_coding-intron (ENSMUSG00000012819.15, intron 2 of 70) 84108 ENSMUSG00000020100.15 ENSMUSG00000020100 ENSMUST00000144989 Slc29a3 protein_coding Interval_77158 chr17 86968945 86970583 + 0 NA promoter-TSS (ENSMUSG00000117628.1) sense_intronic-promoter-TSS (ENSMUSG00000117628.1) -608 ENSMUSG00000117628.1 ENSMUSG00000117628 ENSMUST00000234698 Gm50012 sense_intronic Interval_118920 chr4 134457234 134457626 + 0 NA Intergenic Intergenic -7259 ENSMUSG00000087343.1 ENSMUSG00000087343 ENSMUST00000131110 1700021N21Rik antisense Interval_145956 chr7 42641985 42643495 + 0 NA promoter-TSS (ENSMUSG00000074158.9) protein_coding-promoter-TSS (ENSMUSG00000074158.9) -26381 ENSMUSG00000074158.9 ENSMUSG00000074158 ENSMUST00000098503 Zfp976 protein_coding Interval_151740 chr7 126355083 126355558 + 0 NA Intergenic Intergenic -3723 ENSMUSG00000108417.1 ENSMUSG00000108417 ENSMUST00000205858 Gm30928 lincRNA Interval_173441 chrX 93699418 93699776 + 0 NA intron (ENSMUSG00000035246.16, intron 1 of 7) protein_coding-intron (ENSMUSG00000035246.16, intron 1 of 7) -31965 ENSMUSG00000035246.16 ENSMUSG00000035246 ENSMUST00000146263 Pcyt1b protein_coding Interval_120164 chr4 143135693 143135999 + 0 NA TTS (ENSMUSG00000106597.1) miRNA-TTS (ENSMUSG00000106597.1) 316 ENSMUSG00000106597.1 ENSMUSG00000106597 ENSMUST00000197026 Mir7021 miRNA Interval_88064 chr19 58705683 58707164 + 0 NA intron (ENSMUSG00000101088.6, intron 4 of 10) transcribed_unprocessed_pseudogene-intron (ENSMUSG00000101088.6, intron 4 of 10) 7341 ENSMUSG00000101088.6 ENSMUSG00000101088 ENSMUST00000189764 1810018F18Rik transcribed_unprocessed_pseudogene Interval_148856 chr7 89331435 89332448 + 0 NA intron (ENSMUSG00000039428.11, intron 1 of 8) protein_coding-intron (ENSMUSG00000039428.11, intron 1 of 14) -6429 ENSMUSG00000109327.1 ENSMUSG00000109327 ENSMUST00000207056 Gm44995 antisense Interval_125394 chr5 66659232 66659483 + 0 NA intron (ENSMUSG00000087601.3, intron 2 of 3) antisense-intron (ENSMUSG00000087601.3, intron 1 of 4) 16676 ENSMUSG00000087601.3 ENSMUSG00000087601 ENSMUST00000177319 Uchl1os antisense Interval_22602 chr11 12229669 12229988 + 0 NA Intergenic Intergenic -92447 ENSMUSG00000086584.8 ENSMUSG00000086584 ENSMUST00000174550 Gm12002 antisense Interval_108573 chr3 129213570 129214925 + 0 NA promoter-TSS (ENSMUSG00000028023.16) protein_coding-promoter-TSS (ENSMUSG00000028023.16) 315 ENSMUSG00000028023.16 ENSMUSG00000028023 ENSMUST00000174623 Pitx2 protein_coding Interval_124263 chr5 43113444 43114238 + 0 NA Intergenic Intergenic 34486 ENSMUSG00000105087.1 ENSMUSG00000105087 ENSMUST00000196754 Gm42552 TEC Interval_93403 chr2 72845776 72846334 + 0 NA Intergenic Intergenic -32338 ENSMUSG00000085427.7 ENSMUSG00000085427 ENSMUST00000125746 6430710C18Rik lincRNA Interval_72259 chr17 28854941 28855731 + 0 NA exon (ENSMUSG00000087615.2, exon 2 of 2) antisense-exon (ENSMUSG00000087615.2, exon 2 of 2) -3182 ENSMUSG00000043286.12 ENSMUSG00000043286 ENSMUST00000114737 Pnpla1 protein_coding Interval_75486 chr17 67225105 67225411 + 0 NA intron (ENSMUSG00000033278.10, intron 1 of 19) protein_coding-intron (ENSMUSG00000033278.10, intron 1 of 32) -199023 ENSMUSG00000093508.1 ENSMUSG00000093508 ENSMUST00000176783 Mir5709 miRNA Interval_82927 chr18 79426816 79427101 + 0 NA Intergenic Intergenic 78524 ENSMUSG00000118301.1 ENSMUSG00000118301 ENSMUST00000235488 Gm20593 processed_pseudogene Interval_99151 chr2 157520679 157520905 + 0 NA TTS (ENSMUSG00000081740.3) processed_pseudogene-TTS (ENSMUSG00000081740.3) 1236 ENSMUSG00000081740.3 ENSMUSG00000081740 ENSMUST00000117142 Gm14279 processed_pseudogene Interval_119743 chr4 139622477 139623460 + 0 NA promoter-TSS (ENSMUSG00000028737.15) protein_coding-promoter-TSS (ENSMUSG00000028737.15) 74 ENSMUSG00000028737.15 ENSMUSG00000028737 ENSMUST00000124987 Aldh4a1 protein_coding Interval_107669 chr3 109936225 109936462 + 0 NA intron (ENSMUSG00000059857.15, intron 1 of 4) protein_coding-intron (ENSMUSG00000059857.15, intron 1 of 6) 28959 ENSMUSG00000082624.1 ENSMUSG00000082624 ENSMUST00000121025 Gm12535 processed_pseudogene Interval_65539 chr16 23154316 23154680 + 0 NA intron (ENSMUSG00000022878.5, intron 1 of 2) protein_coding-intron (ENSMUSG00000022878.5, intron 1 of 2) 7852 ENSMUSG00000022878.5 ENSMUSG00000022878 ENSMUST00000171309 Adipoq protein_coding Interval_78324 chr18 11974096 11974570 + 0 NA intron (ENSMUSG00000049411.15, intron 9 of 9) protein_coding-intron (ENSMUSG00000049411.15, intron 9 of 9) 61202 ENSMUSG00000117430.1 ENSMUSG00000117430 ENSMUST00000234828 Gm49968 TEC Interval_155833 chr8 39899428 39899738 + 0 NA Intergenic Intergenic -117131 ENSMUSG00000109815.1 ENSMUSG00000109815 ENSMUST00000209880 Gm7082 processed_pseudogene Interval_124460 chr5 48331478 48331721 + 0 NA intron (ENSMUSG00000029089.8, intron 1 of 6) protein_coding-intron (ENSMUSG00000029089.8, intron 1 of 6) 6987 ENSMUSG00000106604.1 ENSMUSG00000106604 ENSMUST00000197312 Gm42535 TEC Interval_57666 chr15 14211981 14212172 + 0 NA Intergenic Intergenic 69121 ENSMUSG00000115551.1 ENSMUSG00000115551 ENSMUST00000228924 Gm49115 processed_pseudogene Interval_75274 chr17 65633571 65635369 + 0 NA Intergenic Intergenic 5356 ENSMUSG00000050612.6 ENSMUSG00000050612 ENSMUST00000233702 Txndc2 protein_coding Interval_69776 chr16 96208657 96210276 + 0 NA intron (ENSMUSG00000040666.19, intron 1 of 3) protein_coding-intron (ENSMUSG00000040666.19, intron 2 of 7) 8795 ENSMUSG00000040666.19 ENSMUSG00000040666 ENSMUST00000233577 Sh3bgr protein_coding Interval_154725 chr8 22871534 22872490 + 0 NA intron (ENSMUSG00000031540.14, intron 2 of 17) protein_coding-intron (ENSMUSG00000031540.14, intron 3 of 17) -1577 ENSMUSG00000109652.1 ENSMUSG00000109652 ENSMUST00000210028 Gm45555 TEC Interval_64810 chr16 16064764 16064989 + 0 NA intron (ENSMUSG00000041974.10, intron 5 of 16) protein_coding-intron (ENSMUSG00000041974.10, intron 5 of 19) -34722 ENSMUSG00000116385.1 ENSMUSG00000116385 ENSMUST00000230117 Gm18334 processed_pseudogene Interval_69663 chr16 95020590 95020827 + 0 NA Intergenic Intergenic -81696 ENSMUSG00000116667.1 ENSMUSG00000116667 ENSMUST00000232306 Gm49641 processed_pseudogene Interval_39664 chr12 91880239 91881031 + 0 NA Intergenic Intergenic -6992 ENSMUSG00000113676.1 ENSMUSG00000113676 ENSMUST00000222677 Gm18621 processed_pseudogene Interval_154693 chr8 22629598 22629948 + 0 NA intron (ENSMUSG00000031536.6, intron 13 of 13) protein_coding-intron (ENSMUSG00000031536.6, intron 13 of 13) 5730 ENSMUSG00000031535.7 ENSMUSG00000031535 ENSMUST00000033936 Dkk4 protein_coding Interval_151524 chr7 123248354 123248572 + 0 NA TTS (ENSMUSG00000030769.15) protein_coding-TTS (ENSMUSG00000030769.15) -16726 ENSMUSG00000030769.15 ENSMUSG00000030769 ENSMUST00000206180 Slc5a11 protein_coding Interval_159909 chr8 105120859 105121488 + 0 NA Intergenic Intergenic 10549 ENSMUSG00000110502.1 ENSMUSG00000110502 ENSMUST00000212292 Gm8804 processed_pseudogene Interval_122580 chr5 23907893 23908108 + 0 NA Intergenic Intergenic -31557 ENSMUSG00000118576.1 ENSMUSG00000118576 ENSMUST00000239129 AC117663.1 unprocessed_pseudogene Interval_131785 chr5 139852729 139852943 + 0 NA Intergenic Intergenic 7906 ENSMUSG00000064694.1 ENSMUSG00000064694 ENSMUST00000082760 Gm24146 misc_RNA Interval_52093 chr14 35730130 35731407 + 0 NA Intergenic Intergenic 81210 ENSMUSG00000041068.6 ENSMUSG00000041068 ENSMUST00000043266 4930596D02Rik protein_coding Interval_35537 chr12 24603305 24603639 + 0 NA intron (ENSMUSG00000020656.16, intron 7 of 13) protein_coding-intron (ENSMUSG00000020656.16, intron 7 of 13) 22753 ENSMUSG00000020656.16 ENSMUSG00000020656 ENSMUST00000020985 Grhl1 protein_coding Interval_62617 chr15 95639551 95640810 + 0 NA intron (ENSMUSG00000045608.7, intron 2 of 3) protein_coding-intron (ENSMUSG00000045608.7, intron 2 of 3) -7352 ENSMUSG00000045608.7 ENSMUSG00000045608 ENSMUST00000229611 Dbx2 protein_coding Interval_34477 chr12 4535672 4536450 + 0 NA Intergenic Intergenic 11948 ENSMUSG00000112422.1 ENSMUSG00000112422 ENSMUST00000218081 Gm31938 lincRNA Interval_20686 chr10 120233004 120234563 + 0 NA Intergenic Intergenic 6681 ENSMUSG00000020224.15 ENSMUSG00000020224 ENSMUST00000130198 Llph protein_coding Interval_159282 chr8 92765218 92765569 + 0 NA Intergenic Intergenic -48418 ENSMUSG00000078967.5 ENSMUSG00000078967 ENSMUST00000181181 Gapdh-ps16 processed_pseudogene Interval_38098 chr12 75641554 75642646 + 0 NA intron (ENSMUSG00000045690.8, intron 1 of 2) protein_coding-intron (ENSMUSG00000045690.8, intron 1 of 1) -10782 ENSMUSG00000118552.1 ENSMUSG00000118552 ENSMUST00000238938 AC124742.1 protein_coding Interval_112570 chr4 43293764 43294191 + 0 NA intron (ENSMUSG00000028457.18, intron 3 of 8) protein_coding-intron (ENSMUSG00000028457.18, intron 3 of 14) 26792 ENSMUSG00000028457.18 ENSMUSG00000028457 ENSMUST00000102953 Atp8b5 protein_coding Interval_116097 chr4 107650990 107651669 + 0 NA Intergenic Intergenic 32251 ENSMUSG00000028610.16 ENSMUSG00000028610 ENSMUST00000131508 Dmrtb1 protein_coding Interval_44098 chr13 40880384 40881557 + 0 NA intron (ENSMUSG00000021360.16, intron 1 of 2) protein_coding-intron (ENSMUSG00000021360.16, intron 1 of 2) -6781 ENSMUSG00000114672.1 ENSMUSG00000114672 ENSMUST00000225988 Gm48192 TEC Interval_55604 chr14 95420010 95421295 + 0 NA exon (ENSMUSG00000115243.1, exon 1 of 1) processed_pseudogene-exon (ENSMUSG00000115243.1, exon 1 of 1) 866 ENSMUSG00000115243.1 ENSMUSG00000115243 ENSMUST00000228617 Gm5207 processed_pseudogene Interval_9131 chr1 153915269 153916052 + 0 NA Intergenic Intergenic 9617 ENSMUSG00000026473.16 ENSMUSG00000026473 ENSMUST00000154576 Glul protein_coding Interval_90703 chr2 32010841 32011125 + 0 NA intron (ENSMUSG00000001855.15, intron 1 of 2) protein_coding-intron (ENSMUSG00000001855.15, intron 19 of 35) 6361 ENSMUSG00000086192.1 ENSMUSG00000086192 ENSMUST00000141023 Gm13609 antisense Interval_8148 chr1 136075287 136076647 + 0 NA intron (ENSMUSG00000026407.17, intron 2 of 37) protein_coding-intron (ENSMUSG00000026407.17, intron 7 of 43) 2413 ENSMUSG00000026407.17 ENSMUSG00000026407 ENSMUST00000159106 Cacna1s protein_coding Interval_88895 chr2 12294325 12294928 + 0 NA intron (ENSMUSG00000026768.10, intron 2 of 2) protein_coding-intron (ENSMUSG00000026768.10, intron 2 of 29) -6693 ENSMUSG00000086843.3 ENSMUSG00000086843 ENSMUST00000150037 E030013I19Rik antisense Interval_130628 chr5 129328792 129329147 + 0 NA Intergenic Intergenic -35151 ENSMUSG00000104681.1 ENSMUSG00000104681 ENSMUST00000199076 Gm43001 lincRNA Interval_117348 chr4 123154772 123155241 + 0 NA Intergenic Intergenic -15076 ENSMUSG00000028651.12 ENSMUSG00000028651 ENSMUST00000137778 Ppie protein_coding Interval_111546 chr4 22779207 22779435 + 0 NA Intergenic Intergenic 32190 ENSMUSG00000088809.1 ENSMUSG00000088809 ENSMUST00000158184 Gm24078 miRNA Interval_86903 chr19 44733807 44735400 + 0 NA Intergenic Intergenic -5276 ENSMUSG00000117823.1 ENSMUSG00000117823 ENSMUST00000236025 Gm35610 lincRNA Interval_41966 chr13 5702015 5702886 + 0 NA intron (ENSMUSG00000114053.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000114053.1, intron 1 of 2) 119408 ENSMUSG00000080562.2 ENSMUSG00000080562 ENSMUST00000116912 Gm26043 miRNA Interval_165127 chr9 44702891 44703371 + 0 NA TTS (ENSMUSG00000048537.16) protein_coding-TTS (ENSMUSG00000048537.16) -9879 ENSMUSG00000111280.1 ENSMUSG00000111280 ENSMUST00000214717 Gm47239 TEC Interval_154457 chr8 18106443 18107266 + 0 NA Intergenic Intergenic 167967 ENSMUSG00000088320.1 ENSMUSG00000088320 ENSMUST00000157695 Gm25665 snoRNA Interval_133816 chr6 12715024 12715651 + 0 NA intron (ENSMUSG00000032625.14, intron 1 of 27) protein_coding-intron (ENSMUSG00000032625.14, intron 1 of 27) -27562 ENSMUSG00000065030.1 ENSMUSG00000065030 ENSMUST00000083096 n-R5s160 rRNA Interval_42528 chr13 14605461 14605715 + 0 NA Intergenic Intergenic 7439 ENSMUSG00000015672.4 ENSMUSG00000015672 ENSMUST00000015816 Mrpl32 protein_coding Interval_169386 chr9 96844794 96845038 + 0 NA intron (ENSMUSG00000043587.15, intron 2 of 3) protein_coding-intron (ENSMUSG00000043587.15, intron 2 of 5) -30582 ENSMUSG00000100922.1 ENSMUSG00000100922 ENSMUST00000186517 Gm8520 processed_pseudogene Interval_146617 chr7 48436279 48436785 + 0 NA Intergenic Intergenic 19714 ENSMUSG00000070547.4 ENSMUSG00000070547 ENSMUST00000188918 Mrgprb1 protein_coding Interval_46452 chr13 66277807 66278007 + 0 NA intron (ENSMUSG00000114616.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000114616.1, intron 1 of 2) 2150 ENSMUSG00000114239.1 ENSMUSG00000114239 ENSMUST00000225908 Gm48245 processed_pseudogene Interval_39555 chr12 90525675 90526051 + 0 NA Intergenic Intergenic 34238 ENSMUSG00000113023.1 ENSMUSG00000113023 ENSMUST00000220911 Gm47686 processed_pseudogene Interval_67122 chr16 43606753 43607527 + 0 NA intron (ENSMUSG00000022708.16, intron 3 of 3) protein_coding-intron (ENSMUSG00000022708.16, intron 7 of 8) -33515 ENSMUSG00000076372.2 ENSMUSG00000076372 ENSMUST00000102417 Mir568 miRNA Interval_128783 chr5 115235002 115236148 + 0 NA promoter-TSS (ENSMUSG00000060152.14) protein_coding-promoter-TSS (ENSMUSG00000060152.14) -2404 ENSMUSG00000060152.14 ENSMUSG00000060152 ENSMUST00000140083 Pop5 protein_coding Interval_121753 chr5 6741859 6742679 + 0 NA Intergenic Intergenic 7188 ENSMUSG00000106532.1 ENSMUSG00000106532 ENSMUST00000197343 Gm5714 processed_pseudogene Interval_113767 chr4 58455307 58455606 + 0 NA intron (ENSMUSG00000038668.14, intron 3 of 3) protein_coding-intron (ENSMUSG00000038668.14, intron 3 of 3) -14358 ENSMUSG00000093293.1 ENSMUSG00000093293 ENSMUST00000175552 Mir3095 miRNA Interval_93135 chr2 70508663 70509795 + 0 NA promoter-TSS (ENSMUSG00000075302.10) protein_coding-promoter-TSS (ENSMUSG00000075302.10) -30 ENSMUSG00000086515.1 ENSMUSG00000086515 ENSMUST00000150702 Erich2os antisense Interval_145000 chr7 29349726 29351083 + 0 NA intron (ENSMUSG00000030583.16, intron 5 of 13) protein_coding-intron (ENSMUSG00000030583.16, intron 15 of 22) 27201 ENSMUSG00000030583.16 ENSMUSG00000030583 ENSMUST00000183085 Sipa1l3 protein_coding Interval_72047 chr17 27711630 27711875 + 0 NA TTS (ENSMUSG00000040276.15) protein_coding-TTS (ENSMUSG00000040276.15) 6597 ENSMUSG00000024215.14 ENSMUSG00000024215 ENSMUST00000138970 Spdef protein_coding Interval_112835 chr4 45418003 45419471 + 0 NA Intergenic Intergenic -10091 ENSMUSG00000045973.18 ENSMUSG00000045973 ENSMUST00000134714 Slc25a51 protein_coding Interval_49723 chr13 114256698 114258183 + 0 NA Intergenic Intergenic -14800 ENSMUSG00000114655.1 ENSMUSG00000114655 ENSMUST00000225060 4631422I05Rik TEC Interval_15069 chr10 42321690 42321858 + 0 NA intron (ENSMUSG00000038302.14, intron 8 of 10) protein_coding-intron (ENSMUSG00000038302.14, intron 10 of 12) 9489 ENSMUSG00000081873.1 ENSMUSG00000081873 ENSMUST00000120526 Gm15197 processed_pseudogene Interval_66071 chr16 31415646 31416271 + 0 NA exon (ENSMUSG00000116690.1, exon 2 of 2) lincRNA-exon (ENSMUSG00000116690.1, exon 2 of 2) 1903 ENSMUSG00000116690.1 ENSMUSG00000116690 ENSMUST00000231871 Gm49736 lincRNA Interval_133714 chr6 9394719 9395008 + 0 NA Intergenic Intergenic 248097 ENSMUSG00000107851.1 ENSMUSG00000107851 ENSMUST00000203681 Gm35736 processed_pseudogene Interval_113906 chr4 59769986 59770566 + 0 NA exon (ENSMUSG00000038544.14, exon 5 of 5) protein_coding-exon (ENSMUSG00000038544.14, exon 5 of 5) 31313 ENSMUSG00000038544.14 ENSMUSG00000038544 ENSMUST00000138097 Inip protein_coding Interval_170517 chr9 108455718 108455990 + 0 NA exon (ENSMUSG00000032609.12, exon 1 of 2) protein_coding-exon (ENSMUSG00000032609.12, exon 1 of 2) 4224 ENSMUSG00000032609.12 ENSMUSG00000032609 ENSMUST00000193618 Klhdc8b protein_coding Interval_134713 chr6 30601124 30601330 + 0 NA Intergenic Intergenic -11328 ENSMUSG00000029788.13 ENSMUSG00000029788 ENSMUST00000165949 Cpa5 protein_coding Interval_172574 chrX 36902327 36903947 + 0 NA promoter-TSS (ENSMUSG00000044149.7) protein_coding-promoter-TSS (ENSMUSG00000044149.7) 376 ENSMUSG00000044149.7 ENSMUSG00000044149 ENSMUST00000057093 Nkrf protein_coding Interval_136690 chr6 57796017 57796779 + 0 NA intron (ENSMUSG00000037788.14, intron 1 of 3) protein_coding-intron (ENSMUSG00000037788.14, intron 1 of 4) 28752 ENSMUSG00000037788.14 ENSMUSG00000037788 ENSMUST00000143953 Vopp1 protein_coding Interval_2488 chr1 39710187 39710627 + 0 NA intron (ENSMUSG00000057173.8, intron 3 of 14) protein_coding-intron (ENSMUSG00000057173.8, intron 3 of 14) 10590 ENSMUSG00000057173.8 ENSMUSG00000057173 ENSMUST00000126760 Rfx8 protein_coding Interval_139063 chr6 94694525 94695068 + 0 NA intron (ENSMUSG00000030029.14, intron 1 of 19) protein_coding-intron (ENSMUSG00000030029.14, intron 1 of 19) 5362 ENSMUSG00000030029.14 ENSMUSG00000030029 ENSMUST00000124165 Lrig1 protein_coding Interval_105423 chr3 86141654 86143223 + 0 NA promoter-TSS (ENSMUSG00000103408.1) lincRNA-promoter-TSS (ENSMUSG00000103408.1) 264 ENSMUSG00000028081.6 ENSMUSG00000028081 ENSMUST00000029722 Rps3a1 protein_coding Interval_126018 chr5 76876006 76876896 + 0 NA intron (ENSMUSG00000055923.16, intron 3 of 3) protein_coding-intron (ENSMUSG00000055923.16, intron 13 of 13) 18627 ENSMUSG00000055923.16 ENSMUSG00000055923 ENSMUST00000134805 Aasdh protein_coding Interval_40784 chr12 108363488 108364335 + 0 NA Intergenic Intergenic 17826 ENSMUSG00000021259.5 ENSMUSG00000021259 ENSMUST00000222240 Cyp46a1 protein_coding Interval_9381 chr1 156676148 156677403 + 0 NA Intergenic Intergenic -1770 ENSMUSG00000102961.1 ENSMUSG00000102961 ENSMUST00000194858 Gm19918 TEC Interval_24645 chr11 35603874 35604571 + 0 NA intron (ENSMUSG00000056427.10, intron 7 of 8) protein_coding-intron (ENSMUSG00000056427.10, intron 12 of 35) -12594 ENSMUSG00000065583.1 ENSMUSG00000065583 ENSMUST00000083649 Mir218-2 miRNA Interval_173183 chrX 73921383 73922653 + 0 NA promoter-TSS (ENSMUSG00000031388.14) protein_coding-promoter-TSS (ENSMUSG00000031388.14) -166 ENSMUSG00000031388.14 ENSMUSG00000031388 ENSMUST00000153929 Naa10 protein_coding Interval_107808 chr3 115641423 115643269 + 0 NA Intergenic Intergenic 72726 ENSMUSG00000045092.8 ENSMUSG00000045092 ENSMUST00000055676 S1pr1 protein_coding Interval_1385 chr1 21229205 21229488 + 0 NA intron (ENSMUSG00000025933.15, intron 4 of 4) protein_coding-intron (ENSMUSG00000025933.15, intron 4 of 4) -5376 ENSMUSG00000102633.1 ENSMUSG00000102633 ENSMUST00000191648 Gm38224 TEC Interval_159703 chr8 98428896 98429636 + 0 NA Intergenic Intergenic -204603 ENSMUSG00000110194.1 ENSMUSG00000110194 ENSMUST00000210793 Gm7192 processed_pseudogene Interval_140613 chr6 120094542 120095239 + 0 NA intron (ENSMUSG00000041377.12, intron 1 of 3) protein_coding-intron (ENSMUSG00000041377.12, intron 1 of 3) 1540 ENSMUSG00000041377.12 ENSMUSG00000041377 ENSMUST00000035244 Ninj2 protein_coding Interval_72715 chr17 31718920 31719162 + 0 NA Intergenic Intergenic -28616 ENSMUSG00000117656.1 ENSMUSG00000117656 ENSMUST00000237283 Gm50225 lincRNA Interval_104233 chr3 61391303 61391781 + 0 NA Intergenic Intergenic -25591 ENSMUSG00000053706.2 ENSMUSG00000053706 ENSMUST00000066298 B430305J03Rik protein_coding Interval_102649 chr3 28866730 28867240 + 0 NA Intergenic Intergenic -12728 ENSMUSG00000104275.1 ENSMUSG00000104275 ENSMUST00000192066 Gm37867 lincRNA Interval_62418 chr15 92265526 92265719 + 0 NA intron (ENSMUSG00000055022.14, intron 14 of 23) protein_coding-intron (ENSMUSG00000055022.14, intron 14 of 23) -78737 ENSMUSG00000097068.2 ENSMUSG00000097068 ENSMUST00000181901 Gm26760 lincRNA Interval_142655 chr6 144772298 144772873 + 0 NA intron (ENSMUSG00000041540.16, intron 1 of 6) protein_coding-intron (ENSMUSG00000041540.16, intron 1 of 13) 31047 ENSMUSG00000087850.1 ENSMUSG00000087850 ENSMUST00000157225 Gm22792 snoRNA Interval_30626 chr11 95549013 95549202 + 0 NA Intergenic Intergenic -34537 ENSMUSG00000046719.7 ENSMUSG00000046719 ENSMUST00000058866 Nxph3 protein_coding Interval_161431 chr8 120436416 120437052 + 0 NA intron (ENSMUSG00000031822.20, intron 2 of 2) protein_coding-intron (ENSMUSG00000092329.1, intron 1 of 15) 6815 ENSMUSG00000080549.2 ENSMUSG00000080549 ENSMUST00000116899 Gm22715 miRNA Interval_48496 chr13 99441577 99441864 + 0 NA TTS (ENSMUSG00000052727.6) protein_coding-TTS (ENSMUSG00000052727.6) 2747 ENSMUSG00000052727.6 ENSMUSG00000052727 ENSMUST00000223820 Map1b protein_coding Interval_1005 chr1 13839801 13840251 + 0 NA Intergenic Intergenic 9093 ENSMUSG00000102166.1 ENSMUSG00000102166 ENSMUST00000194709 Gm36947 TEC Interval_149426 chr7 98423247 98424003 + 0 NA Intergenic Intergenic -8001 ENSMUSG00000108449.1 ENSMUSG00000108449 ENSMUST00000206249 Gm44507 lincRNA Interval_51942 chr14 34142757 34143456 + 0 NA TTS (ENSMUSG00000048337.3) protein_coding-TTS (ENSMUSG00000048337.3) 3658 ENSMUSG00000115101.1 ENSMUSG00000115101 ENSMUST00000227054 Gm7778 processed_pseudogene Interval_106579 chr3 97491967 97492153 + 0 NA Intergenic Intergenic -70040 ENSMUSG00000051392.5 ENSMUSG00000051392 ENSMUST00000060912 Olfr1402 protein_coding Interval_14352 chr10 31369924 31370892 + 0 NA intron (ENSMUSG00000000296.8, intron 2 of 5) protein_coding-intron (ENSMUSG00000000296.8, intron 2 of 6) -28515 ENSMUSG00000111256.1 ENSMUSG00000111256 ENSMUST00000213319 Gm48094 antisense Interval_162562 chr9 4352524 4352794 + 0 NA Intergenic Intergenic 18676 ENSMUSG00000094086.1 ENSMUSG00000094086 ENSMUST00000174981 Gm23992 miRNA Interval_11118 chr1 179485315 179487442 + 0 NA intron (ENSMUSG00000055067.15, intron 1 of 11) protein_coding-intron (ENSMUSG00000055067.15, intron 1 of 5) 31627 ENSMUSG00000055067.15 ENSMUSG00000055067 ENSMUST00000194237 Smyd3 protein_coding Interval_138344 chr6 87451191 87451421 + 0 NA Intergenic Intergenic 12341 ENSMUSG00000030047.14 ENSMUSG00000030047 ENSMUST00000203559 Arhgap25 protein_coding Interval_4777 chr1 78565406 78565865 + 0 NA Intergenic Intergenic 43873 ENSMUSG00000099364.1 ENSMUSG00000099364 ENSMUST00000190504 5730419F03Rik lincRNA Interval_70859 chr17 15447608 15447846 + 0 NA Intergenic Intergenic -12078 ENSMUSG00000116985.1 ENSMUSG00000116985 ENSMUST00000231639 Gm49669 processed_pseudogene Interval_69630 chr16 94724051 94725104 + 0 NA intron (ENSMUSG00000116641.1, intron 1 of 4) antisense-intron (ENSMUSG00000116641.1, intron 1 of 4) 2683 ENSMUSG00000116641.1 ENSMUSG00000116641 ENSMUST00000232585 Gm41505 antisense Interval_70444 chr17 10277428 10277865 + 0 NA intron (ENSMUSG00000062078.15, intron 2 of 6) protein_coding-intron (ENSMUSG00000062078.15, intron 2 of 6) 41715 ENSMUSG00000062078.15 ENSMUSG00000062078 ENSMUST00000233684 Qk protein_coding Interval_39042 chr12 84618935 84619252 + 0 NA Intergenic Intergenic -1680 ENSMUSG00000021240.6 ENSMUSG00000021240 ENSMUST00000221070 Abcd4 protein_coding Interval_70027 chr17 4739077 4739342 + 0 NA Intergenic Intergenic 53750 ENSMUSG00000116649.1 ENSMUSG00000116649 ENSMUST00000232212 Gm49780 processed_pseudogene Interval_117239 chr4 120880936 120881238 + 0 NA intron (ENSMUSG00000032890.17, intron 1 of 5) protein_coding-intron (ENSMUSG00000032890.17, intron 3 of 7) 3218 ENSMUSG00000032890.17 ENSMUSG00000032890 ENSMUST00000171363 Rims3 protein_coding Interval_91729 chr2 48897312 48897560 + 0 NA intron (ENSMUSG00000052155.5, intron 5 of 5) protein_coding-intron (ENSMUSG00000052155.5, intron 9 of 10) 7047 ENSMUSG00000052155.5 ENSMUSG00000052155 ENSMUST00000156681 Acvr2a protein_coding Interval_4522 chr1 74782474 74782853 + 0 NA exon (ENSMUSG00000033227.7, exon 3 of 4) protein_coding-exon (ENSMUSG00000033227.7, exon 3 of 4) 224 ENSMUSG00000033227.7 ENSMUSG00000033227 ENSMUST00000189544 Wnt6 protein_coding Interval_103636 chr3 51333647 51334141 + 0 NA intron (ENSMUSG00000037174.18, intron 1 of 9) protein_coding-intron (ENSMUSG00000037174.18, intron 1 of 9) -30991 ENSMUSG00000104200.1 ENSMUSG00000104200 ENSMUST00000195224 Gm37399 TEC Interval_16988 chr10 70296767 70297053 + 0 NA Intergenic Intergenic -8734 ENSMUSG00000052426.4 ENSMUSG00000052426 ENSMUST00000064271 Gm9877 pseudogene Interval_165724 chr9 51878088 51878391 + 0 NA Intergenic Intergenic -2353 ENSMUSG00000074354.11 ENSMUSG00000074354 ENSMUST00000130086 Arhgap20os antisense Interval_13062 chr10 10955245 10955930 + 0 NA intron (ENSMUSG00000019828.13, intron 2 of 9) protein_coding-intron (ENSMUSG00000019828.13, intron 2 of 8) -80329 ENSMUSG00000111921.1 ENSMUSG00000111921 ENSMUST00000218933 Gm48406 processed_pseudogene Interval_21093 chr10 126195342 126196275 + 0 NA Intergenic Intergenic -9485 ENSMUSG00000112632.1 ENSMUSG00000112632 ENSMUST00000218265 Gm4510 processed_pseudogene Interval_90221 chr2 29102908 29103268 + 0 NA Intergenic Intergenic -8983 ENSMUSG00000082788.1 ENSMUSG00000082788 ENSMUST00000120617 Gm13396 processed_pseudogene Interval_109149 chr3 136790252 136790711 + 0 NA intron (ENSMUSG00000028161.17, intron 2 of 2) protein_coding-intron (ENSMUSG00000028161.17, intron 1 of 13) 7897 ENSMUSG00000106439.1 ENSMUSG00000106439 ENSMUST00000200068 Gm44327 miRNA Interval_163004 chr9 14433268 14434414 + 0 NA Intergenic Intergenic 1570 ENSMUSG00000111426.1 ENSMUSG00000111426 ENSMUST00000214650 Gm47318 unprocessed_pseudogene Interval_83430 chr18 85325010 85326133 + 0 NA Intergenic Intergenic 253735 ENSMUSG00000118198.1 ENSMUSG00000118198 ENSMUST00000237500 Gm50370 lincRNA Interval_16397 chr10 62725349 62726539 + 0 NA promoter-TSS (ENSMUSG00000036923.12) protein_coding-promoter-TSS (ENSMUSG00000036923.12) -143 ENSMUSG00000036923.12 ENSMUSG00000036923 ENSMUST00000126979 Stox1 protein_coding Interval_4053 chr1 66910061 66910368 + 0 NA Intergenic Intergenic 24484 ENSMUSG00000061816.15 ENSMUSG00000061816 ENSMUST00000151328 Myl1 protein_coding Interval_49846 chr13 117055265 117055679 + 0 NA Intergenic Intergenic 4738 ENSMUSG00000114609.1 ENSMUSG00000114609 ENSMUST00000224367 Gm29767 processed_pseudogene Interval_122394 chr5 21925704 21926354 + 0 NA intron (ENSMUSG00000042453.14, intron 49 of 64) protein_coding-intron (ENSMUSG00000042453.14, intron 49 of 63) 15098 ENSMUSG00000073152.4 ENSMUSG00000073152 ENSMUST00000084713 Gm10475 antisense Interval_35011 chr12 16634153 16634839 + 0 NA intron (ENSMUSG00000020593.16, intron 1 of 21) protein_coding-intron (ENSMUSG00000020593.16, intron 1 of 21) -19242 ENSMUSG00000020591.11 ENSMUSG00000020591 ENSMUST00000221049 Ntsr2 protein_coding Interval_53657 chr14 60655266 60656251 + 0 NA intron (ENSMUSG00000021990.16, intron 2 of 2) protein_coding-intron (ENSMUSG00000021990.16, intron 1 of 12) -58856 ENSMUSG00000114408.1 ENSMUSG00000114408 ENSMUST00000224210 Gm47810 processed_pseudogene Interval_144786 chr7 28249070 28249451 + 0 NA Intergenic Intergenic -13340 ENSMUSG00000109502.1 ENSMUSG00000109502 ENSMUST00000208035 Gm18672 processed_pseudogene Interval_163311 chr9 20788134 20788466 + 0 NA intron (ENSMUSG00000004098.7, intron 32 of 41) protein_coding-intron (ENSMUSG00000004098.7, intron 32 of 66) -18734 ENSMUSG00000087728.1 ENSMUSG00000087728 ENSMUST00000157103 Gm26274 misc_RNA Interval_20958 chr10 122777776 122778212 + 0 NA promoter-TSS (ENSMUSG00000111957.1) TEC-promoter-TSS (ENSMUSG00000111957.1) 71 ENSMUSG00000111957.1 ENSMUSG00000111957 ENSMUST00000218987 Gm47582 TEC Interval_130047 chr5 123899337 123899566 + 0 NA Intergenic Intergenic -7824 ENSMUSG00000023106.15 ENSMUSG00000023106 ENSMUST00000166233 Denr protein_coding Interval_143611 chr7 13147957 13148333 + 0 NA Intergenic Intergenic 3436 ENSMUSG00000109830.1 ENSMUSG00000109830 ENSMUST00000211675 Gm7965 processed_pseudogene Interval_21950 chr11 5396676 5397295 + 0 NA intron (ENSMUSG00000041961.14, intron 1 of 3) protein_coding-intron (ENSMUSG00000041961.14, intron 1 of 8) -15245 ENSMUSG00000041961.14 ENSMUSG00000041961 ENSMUST00000143746 Znrf3 protein_coding Interval_169486 chr9 98249637 98251808 + 0 NA Intergenic Intergenic -45882 ENSMUSG00000032456.13 ENSMUSG00000032456 ENSMUST00000112937 Nmnat3 protein_coding Interval_12531 chr1 194920026 194920215 + 0 NA Intergenic Intergenic -18831 ENSMUSG00000016494.9 ENSMUSG00000016494 ENSMUST00000194036 Cd34 protein_coding Interval_81420 chr18 60653988 60654274 + 0 NA intron (ENSMUSG00000043079.17, intron 1 of 3) protein_coding-intron (ENSMUSG00000043079.17, intron 1 of 3) -29869 ENSMUSG00000043079.17 ENSMUSG00000043079 ENSMUST00000139236 Synpo protein_coding Interval_27140 chr11 63252143 63252671 + 0 NA Intergenic Intergenic -10932 ENSMUSG00000083052.1 ENSMUSG00000083052 ENSMUST00000117347 Gm12285 processed_pseudogene Interval_80355 chr18 39936718 39936943 + 0 NA Intergenic Intergenic -7456 ENSMUSG00000118015.1 ENSMUSG00000118015 ENSMUST00000237624 Gm41708 lincRNA Interval_152544 chr7 134115297 134115962 + 0 NA intron (ENSMUSG00000054555.11, intron 3 of 6) protein_coding-intron (ENSMUSG00000054555.11, intron 3 of 22) -15351 ENSMUSG00000108478.1 ENSMUSG00000108478 ENSMUST00000206856 Gm19514 TEC Interval_42025 chr13 6615273 6616803 + 0 NA intron (ENSMUSG00000021196.14, intron 7 of 15) protein_coding-intron (ENSMUSG00000021196.14, intron 7 of 21) -18159 ENSMUSG00000021196.14 ENSMUSG00000021196 ENSMUST00000136585 Pfkp protein_coding Interval_134217 chr6 23147359 23147825 + 0 NA Intergenic Intergenic 9028 ENSMUSG00000117306.1 ENSMUSG00000117306 ENSMUST00000233718 Gm8945 processed_pseudogene Interval_9546 chr1 159254202 159254432 + 0 NA intron (ENSMUSG00000040782.12, intron 5 of 5) protein_coding-intron (ENSMUSG00000040782.12, intron 6 of 19) 18607 ENSMUSG00000103572.1 ENSMUSG00000103572 ENSMUST00000193750 Gm37115 TEC Interval_74449 chr17 50724561 50725431 + 0 NA Intergenic Intergenic 26308 ENSMUSG00000044645.8 ENSMUSG00000044645 ENSMUST00000061681 Gm7334 processed_pseudogene Interval_83088 chr18 81180400 81180960 + 0 NA Intergenic Intergenic 55386 ENSMUSG00000097181.1 ENSMUSG00000097181 ENSMUST00000181204 4930594M17Rik lincRNA Interval_142463 chr6 142538435 142538650 + 0 NA Intergenic Intergenic -30599 ENSMUSG00000030246.12 ENSMUSG00000030246 ENSMUST00000134191 Ldhb protein_coding Interval_112314 chr4 40297406 40297649 + 0 NA Intergenic Intergenic -15705 ENSMUSG00000087137.1 ENSMUSG00000087137 ENSMUST00000144039 4930509K18Rik lincRNA Interval_170968 chr9 113385337 113386741 + 0 NA Intergenic Intergenic -17436 ENSMUSG00000087817.1 ENSMUSG00000087817 ENSMUST00000157192 Gm22492 misc_RNA Interval_165218 chr9 45417349 45417694 + 0 NA intron (ENSMUSG00000097074.2, intron 4 of 4) antisense-intron (ENSMUSG00000097074.2, intron 4 of 4) -3431 ENSMUSG00000111186.1 ENSMUSG00000111186 ENSMUST00000216490 Gm48135 TEC Interval_157130 chr8 65895647 65896058 + 0 NA intron (ENSMUSG00000036469.16, intron 2 of 7) protein_coding-intron (ENSMUSG00000036469.16, intron 2 of 7) -6205 ENSMUSG00000065297.1 ENSMUSG00000065297 ENSMUST00000083363 Gm26123 snoRNA Interval_95662 chr2 113806795 113808193 + 0 NA intron (ENSMUSG00000023236.7, intron 2 of 5) protein_coding-intron (ENSMUSG00000023236.7, intron 2 of 5) 21268 ENSMUSG00000023236.7 ENSMUSG00000023236 ENSMUST00000139975 Scg5 protein_coding Interval_86183 chr19 37602098 37603211 + 0 NA intron (ENSMUSG00000053799.8, intron 18 of 22) protein_coding-intron (ENSMUSG00000053799.8, intron 17 of 21) 81775 ENSMUSG00000053799.8 ENSMUSG00000053799 ENSMUST00000238817 Exoc6 protein_coding Interval_166884 chr9 63650270 63651645 + 0 NA intron (ENSMUSG00000032402.12, intron 8 of 8) protein_coding-intron (ENSMUSG00000032402.12, intron 8 of 8) 33969 ENSMUSG00000037257.8 ENSMUSG00000037257 ENSMUST00000213702 Aagab protein_coding Interval_18214 chr10 83736434 83736865 + 0 NA intron (ENSMUSG00000087651.3, intron 1 of 1) protein_coding-intron (ENSMUSG00000087651.3, intron 1 of 5) -1260 ENSMUSG00000087651.3 ENSMUSG00000087651 ENSMUST00000218623 1500009L16Rik protein_coding Interval_33183 chr11 115061648 115063335 + 0 NA promoter-TSS (ENSMUSG00000048498.7) protein_coding-promoter-TSS (ENSMUSG00000048498.7) -314 ENSMUSG00000048498.7 ENSMUSG00000048498 ENSMUST00000062787 Cd300e protein_coding Interval_41231 chr12 111998392 111998762 + 0 NA intron (ENSMUSG00000054003.13, intron 4 of 31) protein_coding-intron (ENSMUSG00000054003.13, intron 7 of 35) -14489 ENSMUSG00000054003.13 ENSMUSG00000054003 ENSMUST00000193630 Tdrd9 protein_coding Interval_44547 chr13 45955476 45955868 + 0 NA intron (ENSMUSG00000046876.16, intron 1 of 2) protein_coding-intron (ENSMUSG00000046876.16, intron 2 of 7) 9304 ENSMUSG00000046876.16 ENSMUSG00000046876 ENSMUST00000222610 Atxn1 protein_coding Interval_107065 chr3 103256165 103256478 + 0 NA Intergenic Intergenic -9058 ENSMUSG00000104976.1 ENSMUSG00000104976 ENSMUST00000200621 Gm43060 processed_pseudogene Interval_115810 chr4 104798819 104800016 + 0 NA exon (ENSMUSG00000029656.13, exon 1 of 4) protein_coding-exon (ENSMUSG00000029656.13, exon 1 of 4) 209 ENSMUSG00000029656.13 ENSMUSG00000029656 ENSMUST00000123892 C8b protein_coding Interval_47832 chr13 93614808 93615650 + 0 NA Intergenic Intergenic -10153 ENSMUSG00000085834.1 ENSMUSG00000085834 ENSMUST00000143025 Gm15622 antisense Interval_85678 chr19 29640767 29641150 + 0 NA intron (ENSMUSG00000046324.12, intron 1 of 12) protein_coding-intron (ENSMUSG00000046324.12, intron 2 of 13) 5069 ENSMUSG00000046324.12 ENSMUSG00000046324 ENSMUST00000160907 Ermp1 protein_coding Interval_174452 chrX 152647104 152647996 + 0 NA intron (ENSMUSG00000045180.13, intron 3 of 7) protein_coding-intron (ENSMUSG00000045180.13, intron 5 of 9) 25690 ENSMUSG00000045180.13 ENSMUSG00000045180 ENSMUST00000141677 Shroom2 protein_coding Interval_169441 chr9 97322649 97323603 + 0 NA Intergenic Intergenic -26490 ENSMUSG00000087167.1 ENSMUSG00000087167 ENSMUST00000127307 Gm15891 antisense Interval_148443 chr7 81297362 81297615 + 0 NA intron (ENSMUSG00000025584.17, intron 1 of 7) protein_coding-intron (ENSMUSG00000025584.17, intron 6 of 21) -9205 ENSMUSG00000025584.17 ENSMUSG00000025584 ENSMUST00000130494 Pde8a protein_coding Interval_118077 chr4 128805599 128807147 + 0 NA promoter-TSS (ENSMUSG00000028799.15) protein_coding-promoter-TSS (ENSMUSG00000028799.15) -328 ENSMUSG00000028799.15 ENSMUSG00000028799 ENSMUST00000138371 Zfp362 protein_coding Interval_165462 chr9 48451783 48453557 + 0 NA Intergenic Intergenic 2270 ENSMUSG00000063543.5 ENSMUSG00000063543 ENSMUST00000165252 Gm5616 processed_pseudogene Interval_169396 chr9 96933109 96933316 + 0 NA Intergenic Intergenic 27705 ENSMUSG00000101209.1 ENSMUSG00000101209 ENSMUST00000186232 Gm8524 processed_pseudogene Interval_81 GL456221.1 34858 36950 + 0 NA NA NA NA NA Interval_50058 chr14 4334064 4336166 + 0 NA intron (ENSMUSG00000079388.9, intron 1 of 5) protein_coding-intron (ENSMUSG00000079388.9, intron 1 of 5) 352 ENSMUSG00000079388.9 ENSMUSG00000079388 ENSMUST00000112778 2610042L04Rik protein_coding Interval_16767 chr10 68041700 68041921 + 0 NA exon (ENSMUSG00000037846.18, exon 12 of 15) protein_coding-exon (ENSMUSG00000037846.18, exon 12 of 15) -15184 ENSMUSG00000086838.1 ENSMUSG00000086838 ENSMUST00000143555 Gm16212 antisense Interval_101145 chr2 178468518 178468737 + 0 NA intron (ENSMUSG00000039155.15, intron 9 of 13) protein_coding-intron (ENSMUSG00000039155.15, intron 9 of 14) 7997 ENSMUSG00000039155.15 ENSMUSG00000039155 ENSMUST00000176869 Cdh26 protein_coding Interval_63645 chr15 102510174 102511401 + 0 NA promoter-TSS (ENSMUSG00000023050.9) protein_coding-promoter-TSS (ENSMUSG00000023050.9) -87 ENSMUSG00000023050.9 ENSMUSG00000023050 ENSMUST00000167677 Map3k12 protein_coding Interval_131722 chr5 139497969 139498227 + 0 NA Intergenic Intergenic -13634 ENSMUSG00000053581.13 ENSMUSG00000053581 ENSMUST00000143889 Zfand2a protein_coding Interval_113042 chr4 47158876 47159249 + 0 NA Intergenic Intergenic -12607 ENSMUSG00000083491.1 ENSMUSG00000083491 ENSMUST00000118334 Gm12423 processed_pseudogene Interval_85430 chr19 25955124 25955350 + 0 NA Intergenic Intergenic 91230 ENSMUSG00000118016.1 ENSMUSG00000118016 ENSMUST00000237184 1700048O14Rik processed_transcript Interval_138394 chr6 87841689 87842500 + 0 NA TTS (ENSMUSG00000030057.15) protein_coding-TTS (ENSMUSG00000030057.15) -3394 ENSMUSG00000030056.8 ENSMUSG00000030056 ENSMUST00000204892 Isy1 protein_coding Interval_81357 chr18 59078191 59079123 + 0 NA Intergenic Intergenic 16191 ENSMUSG00000050875.11 ENSMUSG00000050875 ENSMUST00000175830 Minar2 protein_coding Interval_147214 chr7 64672481 64673805 + 0 NA intron (ENSMUSG00000030519.14, intron 1 of 11) protein_coding-intron (ENSMUSG00000030519.14, intron 3 of 14) -71440 ENSMUSG00000030519.14 ENSMUSG00000030519 ENSMUST00000206630 Apba2 protein_coding Interval_71951 chr17 27177996 27180036 + 0 NA Intergenic Intergenic -11221 ENSMUSG00000024210.3 ENSMUSG00000024210 ENSMUST00000025046 Ip6k3 protein_coding Interval_10263 chr1 167660507 167661548 + 0 NA Intergenic Intergenic -28210 ENSMUSG00000026686.14 ENSMUSG00000026686 ENSMUST00000028003 Lmx1a protein_coding Interval_87452 chr19 51592028 51592492 + 0 NA Intergenic Intergenic -39289 ENSMUSG00000117806.1 ENSMUSG00000117806 ENSMUST00000237010 Gm50325 processed_pseudogene Interval_49948 chr13 118713727 118716981 + 0 NA promoter-TSS (ENSMUSG00000086709.1) antisense-promoter-TSS (ENSMUSG00000086709.1) 42 ENSMUSG00000086709.1 ENSMUSG00000086709 ENSMUST00000144680 Gm16263 antisense Interval_47812 chr13 93374421 93375154 + 0 NA intron (ENSMUSG00000007617.18, intron 5 of 5) protein_coding-intron (ENSMUSG00000007617.18, intron 5 of 8) -35996 ENSMUSG00000114019.1 ENSMUSG00000114019 ENSMUST00000220564 Gm47155 TEC Interval_95223 chr2 104915652 104915922 + 0 NA intron (ENSMUSG00000045106.12, intron 2 of 13) protein_coding-intron (ENSMUSG00000045106.12, intron 3 of 17) 8241 ENSMUSG00000045106.12 ENSMUSG00000045106 ENSMUST00000130611 Ccdc73 protein_coding Interval_33786 chr11 118490486 118491310 + 0 NA TTS (ENSMUSG00000025576.17) protein_coding-TTS (ENSMUSG00000025576.17) -11440 ENSMUSG00000087036.1 ENSMUSG00000087036 ENSMUST00000153825 Gm11748 processed_transcript Interval_55086 chr14 77864398 77864805 + 0 NA intron (ENSMUSG00000022013.4, intron 1 of 5) protein_coding-intron (ENSMUSG00000022013.4, intron 1 of 4) -24392 ENSMUSG00000022013.4 ENSMUSG00000022013 ENSMUST00000022590 Dnajc15 protein_coding Interval_167384 chr9 68022118 68022335 + 0 NA intron (ENSMUSG00000111841.1, intron 2 of 2) lincRNA-intron (ENSMUSG00000111841.1, intron 2 of 2) 3488 ENSMUSG00000111841.1 ENSMUSG00000111841 ENSMUST00000216827 Gm20745 lincRNA Interval_132442 chr5 144942164 144942932 + 0 NA intron (ENSMUSG00000038780.14, intron 1 of 18) protein_coding-intron (ENSMUSG00000038780.14, intron 1 of 17) -44554 ENSMUSG00000038780.14 ENSMUSG00000038780 ENSMUST00000198621 Smurf1 protein_coding Interval_40038 chr12 100724461 100725722 + 0 NA promoter-TSS (ENSMUSG00000021180.9) protein_coding-promoter-TSS (ENSMUSG00000021180.9) 29 ENSMUSG00000021180.9 ENSMUSG00000021180 ENSMUST00000222347 Rps6ka5 protein_coding Interval_98258 chr2 150563665 150564057 + 0 NA Intergenic Intergenic -6554 ENSMUSG00000068129.5 ENSMUSG00000068129 ENSMUST00000089200 Cst7 protein_coding Interval_110874 chr4 9297060 9297499 + 0 NA intron (ENSMUSG00000041216.15, intron 2 of 5) protein_coding-intron (ENSMUSG00000041216.15, intron 2 of 5) -9888 ENSMUSG00000086233.1 ENSMUSG00000086233 ENSMUST00000142744 Gm11816 antisense Interval_131797 chr5 139947600 139949344 + 0 NA intron (ENSMUSG00000048988.8, intron 1 of 1) protein_coding-intron (ENSMUSG00000048988.8, intron 1 of 1) 15319 ENSMUSG00000106090.1 ENSMUSG00000106090 ENSMUST00000196164 Gm43704 processed_pseudogene Interval_30838 chr11 96795267 96796971 + 0 NA promoter-TSS (ENSMUSG00000081249.3) processed_pseudogene-promoter-TSS (ENSMUSG00000081249.3) -294 ENSMUSG00000081249.3 ENSMUSG00000081249 ENSMUST00000119491 Gm11517 processed_pseudogene Interval_87466 chr19 52541949 52542127 + 0 NA Intergenic Intergenic 204873 ENSMUSG00000118114.1 ENSMUSG00000118114 ENSMUST00000236031 Gm50332 lincRNA Interval_22671 chr11 12734402 12734593 + 0 NA Intergenic Intergenic 41684 ENSMUSG00000088509.1 ENSMUSG00000088509 ENSMUST00000157884 Gm22789 snoRNA Interval_27679 chr11 69432189 69432412 + 0 NA intron (ENSMUSG00000005237.14, intron 73 of 85) protein_coding-intron (ENSMUSG00000005237.14, intron 72 of 84) -16248 ENSMUSG00000086591.1 ENSMUSG00000086591 ENSMUST00000124108 Dnah2os antisense Interval_72489 chr17 30146655 30147020 + 0 NA intron (ENSMUSG00000044477.12, intron 1 of 3) protein_coding-intron (ENSMUSG00000044477.12, intron 3 of 4) 10647 ENSMUSG00000044477.12 ENSMUSG00000044477 ENSMUST00000234091 Zfand3 protein_coding Interval_21293 chr10 127701738 127702111 + 0 NA TTS (ENSMUSG00000040195.11) protein_coding-TTS (ENSMUSG00000040195.11) -17404 ENSMUSG00000025401.9 ENSMUSG00000025401 ENSMUST00000219882 Myo1a protein_coding Interval_162945 chr9 13652326 13652622 + 0 NA intron (ENSMUSG00000031925.17, intron 2 of 4) protein_coding-intron (ENSMUSG00000031925.17, intron 1 of 3) -9986 ENSMUSG00000031925.17 ENSMUSG00000031925 ENSMUST00000177755 Maml2 protein_coding Interval_154021 chr8 11956376 11957547 + 0 NA intron (ENSMUSG00000109995.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000109995.1, intron 1 of 2) 8622 ENSMUSG00000109995.1 ENSMUSG00000109995 ENSMUST00000209977 B020031H02Rik lincRNA Interval_63143 chr15 99349997 99351449 + 0 NA intron (ENSMUSG00000023008.18, intron 1 of 25) protein_coding-intron (ENSMUSG00000023008.18, intron 1 of 24) -1188 ENSMUSG00000115877.1 ENSMUSG00000115877 ENSMUST00000229316 Gm49478 processed_pseudogene Interval_146166 chr7 44467606 44468627 + 0 NA promoter-TSS (ENSMUSG00000038695.13) protein_coding-promoter-TSS (ENSMUSG00000038695.13) -7 ENSMUSG00000038695.13 ENSMUSG00000038695 ENSMUST00000139097 Josd2 protein_coding Interval_87492 chr19 53021652 53023836 + 0 NA intron (ENSMUSG00000025027.18, intron 2 of 2) protein_coding-intron (ENSMUSG00000025027.18, intron 4 of 6) -11988 ENSMUSG00000098730.1 ENSMUSG00000098730 ENSMUST00000184510 Mir6407 miRNA Interval_135798 chr6 47425178 47427028 + 0 NA Intergenic Intergenic 6986 ENSMUSG00000107853.1 ENSMUSG00000107853 ENSMUST00000203098 Gm18584 processed_pseudogene Interval_81647 chr18 62819945 62821327 + 0 NA Intergenic Intergenic -64321 ENSMUSG00000041789.7 ENSMUSG00000041789 ENSMUST00000048109 2700046A07Rik lincRNA Interval_48801 chr13 103421512 103421736 + 0 NA promoter-TSS (ENSMUSG00000087860.1) misc_RNA-promoter-TSS (ENSMUSG00000087860.1) -542 ENSMUSG00000087860.1 ENSMUSG00000087860 ENSMUST00000157235 Gm24441 misc_RNA Interval_23021 chr11 19013532 19015116 + 0 NA exon (ENSMUSG00000020160.18, exon 3 of 13) protein_coding-exon (ENSMUSG00000020160.18, exon 3 of 13) 507 ENSMUSG00000087507.1 ENSMUSG00000087507 ENSMUST00000152073 Gm16141 antisense Interval_22506 chr11 11222902 11223884 + 0 NA intron (ENSMUSG00000050830.17, intron 3 of 4) protein_coding-intron (ENSMUSG00000050830.17, intron 2 of 3) 82879 ENSMUSG00000088861.1 ENSMUSG00000088861 ENSMUST00000158236 Gm23065 rRNA Interval_169986 chr9 103444168 103444692 + 0 NA TTS (ENSMUSG00000086236.9) antisense-TTS (ENSMUSG00000086236.9) 3054 ENSMUSG00000086236.9 ENSMUSG00000086236 ENSMUST00000218189 5830418P13Rik antisense Interval_89241 chr2 18338650 18339188 + 0 NA promoter-TSS (ENSMUSG00000082520.2) processed_pseudogene-promoter-TSS (ENSMUSG00000082520.2) 70 ENSMUSG00000082520.2 ENSMUSG00000082520 ENSMUST00000118436 Gm13349 processed_pseudogene Interval_124926 chr5 60915039 60915364 + 0 NA Intergenic Intergenic 30448 ENSMUSG00000105903.1 ENSMUSG00000105903 ENSMUST00000199566 1700014F14Rik lincRNA Interval_58171 chr15 30271141 30271417 + 0 NA intron (ENSMUSG00000022240.10, intron 1 of 2) protein_coding-intron (ENSMUSG00000022240.10, intron 1 of 22) -157565 ENSMUSG00000115073.1 ENSMUSG00000115073 ENSMUST00000226263 Gm49283 TEC Interval_85045 chr19 21777638 21779194 + 0 NA promoter-TSS (ENSMUSG00000024754.13) protein_coding-promoter-TSS (ENSMUSG00000024754.13) 28 ENSMUSG00000024754.13 ENSMUSG00000024754 ENSMUST00000238079 Cemip2 protein_coding Interval_134005 chr6 17668385 17668813 + 0 NA Intergenic Intergenic -24827 ENSMUSG00000098767.1 ENSMUSG00000098767 ENSMUST00000184623 Gm27755 misc_RNA Interval_58263 chr15 31461904 31463166 + 0 NA TTS (ENSMUSG00000115357.1) processed_pseudogene-TTS (ENSMUSG00000115357.1) 254 ENSMUSG00000115357.1 ENSMUSG00000115357 ENSMUST00000227135 Gm49214 processed_pseudogene Interval_156488 chr8 48695926 48696158 + 0 NA intron (ENSMUSG00000031561.16, intron 1 of 2) protein_coding-intron (ENSMUSG00000031561.16, intron 1 of 2) -64873 ENSMUSG00000110509.1 ENSMUSG00000110509 ENSMUST00000212961 Gm45772 processed_pseudogene Interval_117970 chr4 127394158 127394427 + 0 NA Intergenic Intergenic 14506 ENSMUSG00000079998.2 ENSMUSG00000079998 ENSMUST00000116114 Gm12947 processed_pseudogene Interval_160101 chr8 106430889 106433902 + 0 NA Intergenic Intergenic 17068 ENSMUSG00000031907.9 ENSMUSG00000031907 ENSMUST00000212874 Zfp90 protein_coding Interval_127467 chr5 104142646 104143739 + 0 NA Intergenic Intergenic -27520 ENSMUSG00000053268.7 ENSMUSG00000053268 ENSMUST00000112771 Dspp protein_coding Interval_168716 chr9 86261995 86262212 + 0 NA Intergenic Intergenic 54581 ENSMUSG00000083731.1 ENSMUSG00000083731 ENSMUST00000117532 Gm16202 processed_pseudogene Interval_70102 chr17 5324325 5325645 + 0 NA intron (ENSMUSG00000069729.14, intron 13 of 19) protein_coding-intron (ENSMUSG00000069729.14, intron 12 of 18) -63778 ENSMUSG00000101133.1 ENSMUSG00000101133 ENSMUST00000190732 Gm29050 antisense Interval_115241 chr4 94737925 94739894 + 0 NA promoter-TSS (ENSMUSG00000006386.15) protein_coding-promoter-TSS (ENSMUSG00000006386.15) 59729 ENSMUSG00000028576.12 ENSMUSG00000028576 ENSMUST00000152289 Ift74 protein_coding Interval_63501 chr15 101492653 101493495 + 0 NA Intergenic Intergenic -5006 ENSMUSG00000067613.6 ENSMUSG00000067613 ENSMUST00000159029 Krt83 protein_coding Interval_39264 chr12 86318291 86318571 + 0 NA Intergenic Intergenic -12425 ENSMUSG00000097488.1 ENSMUSG00000097488 ENSMUST00000181495 4732487G21Rik lincRNA Interval_26620 chr11 59276614 59277034 + 0 NA intron (ENSMUSG00000009900.7, intron 1 of 3) protein_coding-intron (ENSMUSG00000009900.7, intron 1 of 3) 13928 ENSMUSG00000009900.7 ENSMUSG00000009900 ENSMUST00000010044 Wnt3a protein_coding Interval_100335 chr2 168461699 168462235 + 0 NA Intergenic Intergenic -43393 ENSMUSG00000082239.1 ENSMUSG00000082239 ENSMUST00000119539 Gm14234 processed_pseudogene Interval_159214 chr8 91799576 91802661 + 0 NA exon (ENSMUSG00000031734.13, exon 1 of 4) protein_coding-exon (ENSMUSG00000031734.13, exon 1 of 4) 949 ENSMUSG00000031734.13 ENSMUSG00000031734 ENSMUST00000175795 Irx3 protein_coding Interval_121759 chr5 7085274 7086180 + 0 NA intron (ENSMUSG00000092094.5, intron 1 of 3) protein_coding-intron (ENSMUSG00000092094.5, intron 1 of 3) 92129 ENSMUSG00000064851.1 ENSMUSG00000064851 ENSMUST00000082917 Gm24525 snRNA Interval_29216 chr11 81612064 81614367 + 0 NA intron (ENSMUSG00000020704.13, intron 1 of 9) protein_coding-intron (ENSMUSG00000020704.13, intron 1 of 9) 25854 ENSMUSG00000087534.1 ENSMUSG00000087534 ENSMUST00000156193 Gm11418 antisense Interval_18627 chr10 88668673 88669009 + 0 NA Intergenic Intergenic 2428 ENSMUSG00000112869.1 ENSMUSG00000112869 ENSMUST00000219708 Gm48108 processed_pseudogene Interval_20010 chr10 111938932 111939206 + 0 NA Intergenic Intergenic -33724 ENSMUSG00000063334.16 ENSMUSG00000063334 ENSMUST00000174653 Krr1 protein_coding Interval_35209 chr12 18213787 18214139 + 0 NA Intergenic Intergenic -2579 ENSMUSG00000073198.5 ENSMUSG00000073198 ENSMUST00000101577 Bnip3l-ps transcribed_processed_pseudogene Interval_23464 chr11 22777441 22778062 + 0 NA intron (ENSMUSG00000051650.11, intron 4 of 5) protein_coding-intron (ENSMUSG00000051650.11, intron 4 of 5) 9496 ENSMUSG00000082576.1 ENSMUSG00000082576 ENSMUST00000118614 Gm12058 processed_pseudogene Interval_5893 chr1 93010840 93011140 + 0 NA intron (ENSMUSG00000045091.4, intron 2 of 2) protein_coding-intron (ENSMUSG00000045091.4, intron 2 of 2) 4656 ENSMUSG00000045091.4 ENSMUSG00000045091 ENSMUST00000059676 Aqp12 protein_coding Interval_27300 chr11 65734800 65735133 + 0 NA promoter-TSS (ENSMUSG00000076460.1) miRNA-promoter-TSS (ENSMUSG00000076460.1) -134 ENSMUSG00000076460.1 ENSMUSG00000076460 ENSMUST00000103261 Mir744 miRNA Interval_171277 chr9 115945209 115945418 + 0 NA intron (ENSMUSG00000056880.12, intron 3 of 13) protein_coding-intron (ENSMUSG00000056880.12, intron 4 of 14) 8171 ENSMUSG00000056880.12 ENSMUSG00000056880 ENSMUST00000121770 Gadl1 protein_coding Interval_123603 chr5 33721135 33724108 + 0 NA promoter-TSS (ENSMUSG00000054252.18) protein_coding-promoter-TSS (ENSMUSG00000054252.18) 1048 ENSMUSG00000106896.1 ENSMUSG00000106896 ENSMUST00000202923 G630022F23Rik TEC Interval_100930 chr2 173415612 173417444 + 0 NA Intergenic Intergenic 21962 ENSMUSG00000086114.1 ENSMUSG00000086114 ENSMUST00000147357 Gm14642 lincRNA Interval_68997 chr16 90010992 90012201 + 0 NA intron (ENSMUSG00000002489.16, intron 2 of 11) protein_coding-intron (ENSMUSG00000002489.16, intron 2 of 11) -78387 ENSMUSG00000116536.1 ENSMUSG00000116536 ENSMUST00000232386 Gm2805 processed_pseudogene Interval_166638 chr9 61470607 61471794 + 0 NA Intergenic Intergenic 1786 ENSMUSG00000111635.1 ENSMUSG00000111635 ENSMUST00000217096 Gm47240 processed_pseudogene Interval_10794 chr1 174974710 174975030 + 0 NA Intergenic Intergenic -53051 ENSMUSG00000050069.3 ENSMUSG00000050069 ENSMUST00000055294 Grem2 protein_coding Interval_104471 chr3 66060285 66060597 + 0 NA intron (ENSMUSG00000027831.9, intron 5 of 5) protein_coding-intron (ENSMUSG00000027831.9, intron 13 of 13) -26243 ENSMUSG00000104189.1 ENSMUSG00000104189 ENSMUST00000192618 Gm37822 TEC Interval_117294 chr4 122781594 122781867 + 0 NA intron (ENSMUSG00000083494.1, intron 1 of 3) unprocessed_pseudogene-intron (ENSMUSG00000083494.1, intron 1 of 3) 12019 ENSMUSG00000083494.1 ENSMUSG00000083494 ENSMUST00000119988 Gm12873 unprocessed_pseudogene Interval_114576 chr4 82613847 82614785 + 0 NA intron (ENSMUSG00000008575.17, intron 1 of 1) protein_coding-intron (ENSMUSG00000008575.17, intron 1 of 1) -26997 ENSMUSG00000084851.1 ENSMUSG00000084851 ENSMUST00000137477 Gm11267 sense_intronic Interval_174170 chrX 137098277 137098492 + 0 NA Intergenic Intergenic -1132 ENSMUSG00000080718.1 ENSMUSG00000080718 ENSMUST00000119317 Gm8019 processed_pseudogene Interval_113047 chr4 47207757 47209004 + 0 NA promoter-TSS (ENSMUSG00000087500.1) antisense-promoter-TSS (ENSMUSG00000087500.1) 79 ENSMUSG00000087500.1 ENSMUSG00000087500 ENSMUST00000153083 Gm12426 antisense Interval_7563 chr1 132237111 132238878 + 0 NA intron (ENSMUSG00000079330.9, intron 4 of 4) protein_coding-intron (ENSMUSG00000079330.9, intron 3 of 3) -8227 ENSMUSG00000066936.4 ENSMUSG00000066936 ENSMUST00000086544 Gm10188 protein_coding Interval_165771 chr9 52459566 52459805 + 0 NA intron (ENSMUSG00000111520.1, intron 5 of 5) lincRNA-intron (ENSMUSG00000111520.1, intron 5 of 5) 55386 ENSMUSG00000111112.1 ENSMUSG00000111112 ENSMUST00000216653 Gm49389 processed_pseudogene Interval_35921 chr12 31949174 31950945 + 0 NA promoter-TSS (ENSMUSG00000002996.17) protein_coding-promoter-TSS (ENSMUSG00000002996.17) -9652 ENSMUSG00000002996.17 ENSMUSG00000002996 ENSMUST00000175666 Hbp1 protein_coding Interval_18082 chr10 82161429 82162001 + 0 NA Intergenic Intergenic -2532 ENSMUSG00000112847.1 ENSMUSG00000112847 ENSMUST00000218999 Gm47573 TEC Interval_145117 chr7 30131906 30132952 + 0 NA intron (ENSMUSG00000074220.10, intron 3 of 3) protein_coding-intron (ENSMUSG00000074220.10, intron 4 of 4) 6814 ENSMUSG00000074220.10 ENSMUSG00000074220 ENSMUST00000156543 Zfp382 protein_coding Interval_11841 chr1 186214074 186214303 + 0 NA intron (ENSMUSG00000103449.1, intron 2 of 3) lincRNA-intron (ENSMUSG00000103449.1, intron 2 of 3) 31931 ENSMUSG00000102790.1 ENSMUSG00000102790 ENSMUST00000193401 Gm37272 TEC Interval_97458 chr2 136751865 136752159 + 0 NA intron (ENSMUSG00000027273.13, intron 1 of 2) protein_coding-intron (ENSMUSG00000027273.13, intron 1 of 7) -7397 ENSMUSG00000082849.1 ENSMUSG00000082849 ENSMUST00000121662 Gm14053 processed_pseudogene Interval_141210 chr6 125620375 125621030 + 0 NA intron (ENSMUSG00000001930.17, intron 5 of 14) protein_coding-intron (ENSMUSG00000001930.17, intron 18 of 51) 67739 ENSMUSG00000001930.17 ENSMUSG00000001930 ENSMUST00000146264 Vwf protein_coding Interval_3686 chr1 60832425 60832830 + 0 NA Intergenic Intergenic 23511 ENSMUSG00000083355.1 ENSMUSG00000083355 ENSMUST00000122024 Gm11581 processed_pseudogene Interval_68021 chr16 63931757 63931992 + 0 NA Intergenic Intergenic 23256 ENSMUSG00000116722.1 ENSMUSG00000116722 ENSMUST00000231945 Gm49627 processed_pseudogene Interval_123011 chr5 28440122 28440761 + 0 NA Intergenic Intergenic -26543 ENSMUSG00000097726.7 ENSMUSG00000097726 ENSMUST00000181202 9530036O11Rik antisense Interval_1770 chr1 33663303 33663947 + 0 NA intron (ENSMUSG00000026134.11, intron 4 of 13) protein_coding-intron (ENSMUSG00000026134.11, intron 4 of 13) 5844 ENSMUSG00000102093.1 ENSMUSG00000102093 ENSMUST00000185377 Gm17813 processed_pseudogene Interval_20652 chr10 120025081 120025742 + 0 NA intron (ENSMUSG00000034813.18, intron 6 of 14) protein_coding-intron (ENSMUSG00000034813.18, intron 15 of 22) 87454 ENSMUSG00000020228.11 ENSMUSG00000020228 ENSMUST00000154501 Helb protein_coding Interval_42237 chr13 10625524 10625928 + 0 NA intron (ENSMUSG00000097009.2, intron 3 of 10) antisense-intron (ENSMUSG00000097009.2, intron 6 of 7) -33160 ENSMUSG00000093260.1 ENSMUSG00000093260 ENSMUST00000175519 Gm23415 miRNA Interval_3839 chr1 63458154 63458921 + 0 NA intron (ENSMUSG00000025964.15, intron 2 of 23) protein_coding-intron (ENSMUSG00000025964.15, intron 2 of 25) -12082 ENSMUSG00000025964.15 ENSMUSG00000025964 ENSMUST00000141545 Adam23 protein_coding Interval_43576 chr13 33743907 33744604 + 0 NA Intergenic Intergenic 3015 ENSMUSG00000097054.1 ENSMUSG00000097054 ENSMUST00000181011 Gm11395 unprocessed_pseudogene Interval_58820 chr15 38312819 38314697 + 0 NA intron (ENSMUSG00000115456.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000115456.1, intron 1 of 2) 1465 ENSMUSG00000115456.1 ENSMUSG00000115456 ENSMUST00000227097 Gm35248 lincRNA Interval_157997 chr8 77727877 77728300 + 0 NA intron (ENSMUSG00000086451.8, intron 2 of 4) processed_transcript-intron (ENSMUSG00000086451.8, intron 5 of 7) -3624 ENSMUSG00000031616.7 ENSMUSG00000031616 ENSMUST00000146561 Ednra protein_coding Interval_106071 chr3 92490735 92491042 + 0 NA Intergenic Intergenic -4993 ENSMUSG00000050359.7 ENSMUSG00000050359 ENSMUST00000054599 Sprr1a protein_coding Interval_58207 chr15 30754968 30755398 + 0 NA intron (ENSMUSG00000022240.10, intron 1 of 2) protein_coding-intron (ENSMUSG00000022240.10, intron 9 of 22) -128562 ENSMUSG00000115337.1 ENSMUSG00000115337 ENSMUST00000228499 4930570B17Rik antisense Interval_31302 chr11 99459144 99459432 + 0 NA Intergenic Intergenic -21138 ENSMUSG00000035775.2 ENSMUSG00000035775 ENSMUST00000017743 Krt20 protein_coding Interval_165201 chr9 45221656 45222233 + 0 NA intron (ENSMUSG00000091996.8, intron 1 of 4) protein_coding-intron (ENSMUSG00000091996.8, intron 1 of 4) -17854 ENSMUSG00000032091.15 ENSMUSG00000032091 ENSMUST00000163945 Tmprss4 protein_coding Interval_174089 chrX 134600497 134602099 + 0 NA promoter-TSS (ENSMUSG00000031266.7) protein_coding-promoter-TSS (ENSMUSG00000031266.7) 73 ENSMUSG00000045427.13 ENSMUSG00000045427 ENSMUST00000059297 Hnrnph2 protein_coding Interval_32561 chr11 108597157 108597433 + 0 NA intron (ENSMUSG00000020728.17, intron 17 of 24) protein_coding-intron (ENSMUSG00000020728.17, intron 20 of 27) -7932 ENSMUSG00000020728.17 ENSMUSG00000020728 ENSMUST00000132978 Cep112 protein_coding Interval_39050 chr12 84685895 84686708 + 0 NA intron (ENSMUSG00000071234.3, intron 1 of 2) protein_coding-intron (ENSMUSG00000071234.3, intron 1 of 3) 9001 ENSMUSG00000113317.1 ENSMUSG00000113317 ENSMUST00000221117 Gm48573 antisense Interval_166547 chr9 60801662 60802152 + 0 NA intron (ENSMUSG00000034485.10, intron 1 of 19) protein_coding-intron (ENSMUSG00000034485.10, intron 1 of 18) 7282 ENSMUSG00000034485.10 ENSMUSG00000034485 ENSMUST00000216574 Uaca protein_coding Interval_151426 chr7 122288579 122290492 + 0 NA promoter-TSS (ENSMUSG00000052889.11) protein_coding-promoter-TSS (ENSMUSG00000052889.11) -23529 ENSMUSG00000108752.1 ENSMUSG00000108752 ENSMUST00000205846 Gm45191 TEC Interval_61956 chr15 85477532 85478028 + 0 NA Intergenic Intergenic 25447 ENSMUSG00000096607.1 ENSMUSG00000096607 ENSMUST00000178942 7530416G11Rik protein_coding Interval_173388 chrX 86330849 86331116 + 0 NA Intergenic Intergenic -2047 ENSMUSG00000083977.3 ENSMUSG00000083977 ENSMUST00000117228 Mageb8-ps unprocessed_pseudogene Interval_128793 chr5 115286478 115287588 + 0 NA intron (ENSMUSG00000041733.10, intron 2 of 4) protein_coding-intron (ENSMUSG00000041733.10, intron 3 of 6) 4867 ENSMUSG00000082610.1 ENSMUSG00000082610 ENSMUST00000119600 Gm13829 processed_pseudogene Interval_20325 chr10 116893581 116894011 + 0 NA intron (ENSMUSG00000034057.8, intron 1 of 24) protein_coding-intron (ENSMUSG00000034057.8, intron 1 of 24) 3123 ENSMUSG00000034057.8 ENSMUSG00000034057 ENSMUST00000048229 Myrfl protein_coding Interval_155826 chr8 39648230 39648933 + 0 NA Intergenic Intergenic -5910 ENSMUSG00000025044.16 ENSMUSG00000025044 ENSMUST00000210589 Msr1 protein_coding Interval_6265 chr1 104987680 104988379 + 0 NA intron (ENSMUSG00000050840.8, intron 11 of 11) protein_coding-intron (ENSMUSG00000050840.8, intron 11 of 11) -75696 ENSMUSG00000089866.1 ENSMUSG00000089866 ENSMUST00000159213 Gm15699 antisense Interval_88967 chr2 13738663 13739183 + 0 NA intron (ENSMUSG00000003418.11, intron 2 of 7) protein_coding-intron (ENSMUSG00000003418.11, intron 2 of 7) 54370 ENSMUSG00000003418.11 ENSMUSG00000003418 ENSMUST00000150781 St8sia6 protein_coding Interval_133303 chr5 151377371 151377653 + 0 NA intron (ENSMUSG00000054622.4, intron 1 of 1) processed_transcript-intron (ENSMUSG00000097321.5, intron 1 of 3) -22632 ENSMUSG00000097321.5 ENSMUSG00000097321 ENSMUST00000201853 1700028E10Rik processed_transcript Interval_119022 chr4 135051300 135051787 + 0 NA Intergenic Intergenic 68904 ENSMUSG00000086884.1 ENSMUSG00000086884 ENSMUST00000146152 Gm16225 lincRNA Interval_40318 chr12 103564136 103565439 + 0 NA intron (ENSMUSG00000021209.12, intron 3 of 25) protein_coding-intron (ENSMUSG00000021209.12, intron 3 of 24) -16611 ENSMUSG00000021209.12 ENSMUSG00000021209 ENSMUST00000190151 Ppp4r4 protein_coding Interval_141884 chr6 135134659 135134892 + 0 NA promoter-TSS (ENSMUSG00000108191.1) processed_pseudogene-promoter-TSS (ENSMUSG00000108191.1) -323 ENSMUSG00000108191.1 ENSMUSG00000108191 ENSMUST00000205069 Gm29803 processed_pseudogene Interval_40669 chr12 106781908 106782507 + 0 NA Intergenic Intergenic -55775 ENSMUSG00000085801.1 ENSMUSG00000085801 ENSMUST00000156376 1700013N06Rik lincRNA Interval_107786 chr3 114839044 114839274 + 0 NA Intergenic Intergenic -10488 ENSMUSG00000105225.1 ENSMUSG00000105225 ENSMUST00000199622 Gm19147 processed_pseudogene Interval_155057 chr8 26015008 26015971 + 0 NA exon (ENSMUSG00000015994.10, exon 1 of 9) protein_coding-exon (ENSMUSG00000015994.10, exon 1 of 9) -7921 ENSMUSG00000110183.1 ENSMUSG00000110183 ENSMUST00000209647 Gm45411 antisense Interval_113799 chr4 58720292 58721753 + 0 NA Intergenic Intergenic -62430 ENSMUSG00000086470.1 ENSMUSG00000086470 ENSMUST00000127456 Gm12580 lincRNA Interval_46460 chr13 66326588 66327122 + 0 NA intron (ENSMUSG00000114616.1, intron 2 of 2) lincRNA-intron (ENSMUSG00000114616.1, intron 2 of 2) 8024 ENSMUSG00000114328.1 ENSMUSG00000114328 ENSMUST00000224794 Gm48246 processed_pseudogene Interval_95599 chr2 112655581 112656904 + 0 NA exon (ENSMUSG00000057378.15, exon 1 of 1) protein_coding-exon (ENSMUSG00000057378.15, exon 1 of 1) 306 ENSMUSG00000057378.15 ENSMUSG00000057378 ENSMUST00000208135 Ryr3 protein_coding Interval_127562 chr5 105306280 105307999 + 0 NA Intergenic Intergenic -13444 ENSMUSG00000079362.5 ENSMUSG00000079362 ENSMUST00000050011 Gm43302 protein_coding Interval_88364 chr2 4460632 4463492 + 0 NA intron (ENSMUSG00000086874.1, intron 1 of 1) protein_coding-intron (ENSMUSG00000026657.17, intron 2 of 23) 4608 ENSMUSG00000086874.1 ENSMUSG00000086874 ENSMUST00000139479 Gm13175 antisense Interval_34322 chr12 3377090 3377824 + 0 NA intron (ENSMUSG00000020668.10, intron 2 of 8) protein_coding-intron (ENSMUSG00000020668.10, intron 1 of 7) 9028 ENSMUSG00000112655.1 ENSMUSG00000112655 ENSMUST00000220255 Gm48511 TEC Interval_53879 chr14 63075730 63078608 + 0 NA Intergenic Intergenic -18169 ENSMUSG00000114344.1 ENSMUSG00000114344 ENSMUST00000225584 Gm17941 processed_pseudogene Interval_54738 chr14 74492924 74493382 + 0 NA Intergenic Intergenic 41594 ENSMUSG00000115427.1 ENSMUSG00000115427 ENSMUST00000226777 Gm49174 processed_pseudogene Interval_165365 chr9 46642624 46643149 + 0 NA Intergenic Intergenic -12667 ENSMUSG00000064673.1 ENSMUSG00000064673 ENSMUST00000082739 Gm22805 snRNA Interval_77861 chr18 4769206 4769466 + 0 NA Intergenic Intergenic 26260 ENSMUSG00000117585.1 ENSMUSG00000117585 ENSMUST00000234879 Gm5047 processed_pseudogene Interval_118999 chr4 134930369 134931463 + 0 NA promoter-TSS (ENSMUSG00000028821.8) protein_coding-promoter-TSS (ENSMUSG00000028821.8) 14 ENSMUSG00000028821.8 ENSMUSG00000028821 ENSMUST00000144037 Syf2 protein_coding Interval_159488 chr8 95030483 95031578 + 0 NA intron (ENSMUSG00000060470.7, intron 1 of 3) protein_coding-intron (ENSMUSG00000060470.7, intron 2 of 11) 10236 ENSMUSG00000060470.7 ENSMUSG00000060470 ENSMUST00000212570 Adgrg3 protein_coding Interval_155959 chr8 41288431 41288628 + 0 NA intron (ENSMUSG00000031592.10, intron 20 of 38) protein_coding-intron (ENSMUSG00000031592.10, intron 19 of 37) 48751 ENSMUSG00000031592.10 ENSMUSG00000031592 ENSMUST00000211247 Pcm1 protein_coding Interval_48855 chr13 104073901 104075069 + 0 NA intron (ENSMUSG00000021710.11, intron 1 of 11) protein_coding-intron (ENSMUSG00000021710.11, intron 1 of 12) -35288 ENSMUSG00000042743.13 ENSMUSG00000042743 ENSMUST00000159574 Sgtb protein_coding Interval_167975 chr9 75185901 75186124 + 0 NA promoter-TSS (ENSMUSG00000034593.16) protein_coding-promoter-TSS (ENSMUSG00000034593.16) -46064 ENSMUSG00000033590.8 ENSMUSG00000033590 ENSMUST00000216529 Myo5c protein_coding Interval_11128 chr1 179539501 179539723 + 0 NA TTS (ENSMUSG00000082395.1) processed_pseudogene-TTS (ENSMUSG00000082395.1) 1195 ENSMUSG00000082395.1 ENSMUSG00000082395 ENSMUST00000120442 Gm15480 processed_pseudogene Interval_54193 chr14 66147345 66148157 + 0 NA intron (ENSMUSG00000022041.10, intron 5 of 6) protein_coding-intron (ENSMUSG00000022041.10, intron 5 of 6) 12712 ENSMUSG00000022041.10 ENSMUSG00000022041 ENSMUST00000022620 Chrna2 protein_coding Interval_28475 chr11 76242863 76244372 + 0 NA promoter-TSS (ENSMUSG00000038046.4) protein_coding-promoter-TSS (ENSMUSG00000038046.4) -158 ENSMUSG00000017286.15 ENSMUSG00000017286 ENSMUST00000168055 Glod4 protein_coding Interval_19069 chr10 94184058 94184369 + 0 NA TTS (ENSMUSG00000065296.1) snRNA-TTS (ENSMUSG00000065296.1) 360 ENSMUSG00000065296.1 ENSMUSG00000065296 ENSMUST00000083362 Gm26122 snRNA Interval_10649 chr1 172441991 172442319 + 0 NA Intergenic Intergenic -31879 ENSMUSG00000103357.1 ENSMUSG00000103357 ENSMUST00000194187 Gm7804 transcribed_processed_pseudogene Interval_19299 chr10 96308855 96309647 + 0 NA promoter-TSS (ENSMUSG00000112290.1) lincRNA-promoter-TSS (ENSMUSG00000112290.1) -94 ENSMUSG00000112234.1 ENSMUSG00000112234 ENSMUST00000220354 Gm48427 lincRNA Interval_120769 chr4 150555704 150556476 + 0 NA intron (ENSMUSG00000039852.17, intron 11 of 22) protein_coding-intron (ENSMUSG00000039852.17, intron 5 of 16) 12454 ENSMUSG00000085213.1 ENSMUSG00000085213 ENSMUST00000128800 Gm13091 antisense Interval_148931 chr7 90152813 90153070 + 0 NA intron (ENSMUSG00000039361.11, intron 1 of 3) protein_coding-intron (ENSMUSG00000039361.11, intron 1 of 20) 6993 ENSMUSG00000109498.1 ENSMUSG00000109498 ENSMUST00000207029 Gm45222 TEC Interval_32643 chr11 109373100 109374135 + 0 NA intron (ENSMUSG00000020611.14, intron 2 of 3) protein_coding-intron (ENSMUSG00000020611.14, intron 2 of 3) -10374 ENSMUSG00000056687.9 ENSMUSG00000056687 ENSMUST00000190563 Gm11696 antisense Interval_13619 chr10 20219341 20219993 + 0 NA intron (ENSMUSG00000019996.17, intron 1 of 5) protein_coding-intron (ENSMUSG00000019996.17, intron 1 of 17) 11177 ENSMUSG00000111356.1 ENSMUSG00000111356 ENSMUST00000216127 Rpl32l processed_pseudogene Interval_46778 chr13 70253911 70254215 + 0 NA Intergenic Intergenic 21241 ENSMUSG00000113463.1 ENSMUSG00000113463 ENSMUST00000222622 4930520P13Rik lincRNA Interval_74482 chr17 51708727 51709332 + 0 NA Intergenic Intergenic 39655 ENSMUSG00000102973.1 ENSMUSG00000102973 ENSMUST00000194215 E430014B02Rik TEC Interval_34275 chr11 121914234 121914457 + 0 NA Intergenic Intergenic -27377 ENSMUSG00000082947.1 ENSMUSG00000082947 ENSMUST00000120180 Gm12587 processed_pseudogene Interval_23203 chr11 20549423 20550314 + 0 NA intron (ENSMUSG00000049800.13, intron 1 of 1) protein_coding-intron (ENSMUSG00000049800.13, intron 1 of 1) 6615 ENSMUSG00000049800.13 ENSMUSG00000049800 ENSMUST00000109585 Sertad2 protein_coding Interval_149030 chr7 92488463 92488681 + 0 NA Intergenic Intergenic 57402 ENSMUSG00000109031.1 ENSMUSG00000109031 ENSMUST00000207187 Gm45201 TEC Interval_46313 chr13 63751390 63751817 + 0 NA Intergenic Intergenic 2852 ENSMUSG00000114015.1 ENSMUSG00000114015 ENSMUST00000223021 Gm47417 unprocessed_pseudogene Interval_142456 chr6 142469429 142469844 + 0 NA intron (ENSMUSG00000030244.7, intron 1 of 16) protein_coding-intron (ENSMUSG00000030244.7, intron 1 of 16) 38307 ENSMUSG00000030246.12 ENSMUSG00000030246 ENSMUST00000134191 Ldhb protein_coding Interval_66871 chr16 38232109 38232452 + 0 NA intron (ENSMUSG00000022812.14, intron 11 of 11) protein_coding-intron (ENSMUSG00000022812.14, intron 10 of 10) 24242 ENSMUSG00000022812.14 ENSMUSG00000022812 ENSMUST00000231437 Gsk3b protein_coding Interval_33560 chr11 117208982 117209869 + 0 NA intron (ENSMUSG00000059248.13, intron 1 of 11) protein_coding-intron (ENSMUSG00000059248.13, intron 1 of 11) 54012 ENSMUSG00000086050.1 ENSMUSG00000086050 ENSMUST00000123882 Gm16045 antisense Interval_172908 chrX 53122258 53122569 + 0 NA intron (ENSMUSG00000061082.11, intron 1 of 2) protein_coding-intron (ENSMUSG00000061082.11, intron 1 of 2) -65223 ENSMUSG00000087365.7 ENSMUSG00000087365 ENSMUST00000151099 C430049B03Rik processed_transcript Interval_28460 chr11 76041342 76041561 + 0 NA Intergenic Intergenic -13669 ENSMUSG00000020846.6 ENSMUSG00000020846 ENSMUST00000021207 Rflnb protein_coding Interval_151082 chr7 118418950 118420210 + 0 NA intron (ENSMUSG00000058420.8, intron 5 of 7) protein_coding-intron (ENSMUSG00000058420.8, intron 5 of 7) 28476 ENSMUSG00000058420.8 ENSMUSG00000058420 ENSMUST00000207650 Syt17 protein_coding Interval_78719 chr18 18946470 18948116 + 0 NA Intergenic Intergenic -185924 ENSMUSG00000117378.1 ENSMUSG00000117378 ENSMUST00000234128 Gm31086 lincRNA Interval_119468 chr4 137765607 137765973 + 0 NA intron (ENSMUSG00000028766.10, intron 1 of 11) protein_coding-intron (ENSMUSG00000028766.10, intron 1 of 11) 16401 ENSMUSG00000028766.10 ENSMUSG00000028766 ENSMUST00000143757 Alpl protein_coding Interval_51983 chr14 34427884 34428483 + 0 NA intron (ENSMUSG00000021796.15, intron 7 of 10) protein_coding-intron (ENSMUSG00000021796.15, intron 8 of 12) 52462 ENSMUSG00000041445.9 ENSMUSG00000041445 ENSMUST00000227130 Mmrn2 protein_coding Interval_29329 chr11 82990865 82991186 + 0 NA exon (ENSMUSG00000069793.12, exon 2 of 6) protein_coding-exon (ENSMUSG00000069793.12, exon 2 of 6) 112 ENSMUSG00000069793.12 ENSMUSG00000069793 ENSMUST00000138797 Slfn9 protein_coding Interval_117791 chr4 126248252 126248883 + 0 NA intron (ENSMUSG00000028849.17, intron 1 of 17) protein_coding-intron (ENSMUSG00000028849.17, intron 1 of 16) -13833 ENSMUSG00000028847.8 ENSMUSG00000028847 ENSMUST00000126786 Trappc3 protein_coding Interval_147757 chr7 73398352 73400954 + 0 NA intron (ENSMUSG00000070509.15, intron 1 of 2) protein_coding-intron (ENSMUSG00000070509.15, intron 2 of 3) -4697 ENSMUSG00000108678.1 ENSMUSG00000108678 ENSMUST00000206096 Gm44758 TEC Interval_16730 chr10 67697928 67699401 + 0 NA Intergenic Intergenic -9174 ENSMUSG00000112396.1 ENSMUSG00000112396 ENSMUST00000219743 Gm47574 TEC Interval_156957 chr8 62411789 62411990 + 0 NA Intergenic Intergenic 76599 ENSMUSG00000109687.1 ENSMUSG00000109687 ENSMUST00000210003 Hspd1-ps2 processed_pseudogene Interval_15326 chr10 44514562 44514841 + 0 NA intron (ENSMUSG00000038151.13, intron 1 of 3) protein_coding-intron (ENSMUSG00000038151.13, intron 1 of 3) -57491 ENSMUSG00000038151.13 ENSMUSG00000038151 ENSMUST00000167340 Prdm1 protein_coding Interval_145859 chr7 40751969 40752382 + 0 NA Intergenic Intergenic 68935 ENSMUSG00000108672.1 ENSMUSG00000108672 ENSMUST00000206420 Gm45008 TEC Interval_150721 chr7 113808385 113808726 + 0 NA intron (ENSMUSG00000038156.16, intron 2 of 5) protein_coding-intron (ENSMUSG00000038156.16, intron 2 of 15) 42381 ENSMUSG00000038156.16 ENSMUSG00000038156 ENSMUST00000084696 Spon1 protein_coding Interval_61926 chr15 85297826 85299024 + 0 NA Intergenic Intergenic 34971 ENSMUSG00000006369.14 ENSMUSG00000006369 ENSMUST00000160798 Fbln1 protein_coding Interval_81886 chr18 65612289 65613510 + 0 NA intron (ENSMUSG00000042439.13, intron 3 of 3) protein_coding-intron (ENSMUSG00000042439.13, intron 2 of 5) 9065 ENSMUSG00000103194.1 ENSMUSG00000103194 ENSMUST00000195369 Gm37643 TEC Interval_85956 chr19 34208669 34211164 + 0 NA intron (ENSMUSG00000024776.18, intron 1 of 4) protein_coding-intron (ENSMUSG00000024776.18, intron 1 of 10) 17687 ENSMUSG00000024776.18 ENSMUSG00000024776 ENSMUST00000130756 Stambpl1 protein_coding Interval_20545 chr10 118787269 118787814 + 0 NA Intergenic Intergenic 17718 ENSMUSG00000112198.1 ENSMUSG00000112198 ENSMUST00000218715 Gm4065 lincRNA Interval_160398 chr8 108938889 108939758 + 0 NA intron (ENSMUSG00000038872.10, intron 13 of 15) protein_coding-intron (ENSMUSG00000038872.10, intron 7 of 9) 2463 ENSMUSG00000093241.1 ENSMUSG00000093241 ENSMUST00000175500 Mir3108 miRNA Interval_154643 chr8 22243009 22243717 + 0 NA exon (ENSMUSG00000031480.15, exon 3 of 5) protein_coding-exon (ENSMUSG00000031480.15, exon 3 of 5) -12171 ENSMUSG00000090007.1 ENSMUSG00000090007 ENSMUST00000160070 Rpl30-ps2 processed_pseudogene Interval_95190 chr2 104631318 104631772 + 0 NA intron (ENSMUSG00000027176.8, intron 3 of 20) protein_coding-intron (ENSMUSG00000027176.8, intron 3 of 20) 40927 ENSMUSG00000027176.8 ENSMUSG00000027176 ENSMUST00000126539 Cstf3 protein_coding Interval_45757 chr13 57744785 57745699 + 0 NA intron (ENSMUSG00000056222.15, intron 2 of 10) protein_coding-intron (ENSMUSG00000056222.15, intron 1 of 9) 163090 ENSMUSG00000056222.15 ENSMUSG00000056222 ENSMUST00000185905 Spock1 protein_coding Interval_143088 chr6 149188089 149189349 + 0 NA promoter-TSS (ENSMUSG00000068250.13) protein_coding-promoter-TSS (ENSMUSG00000068250.13) -38 ENSMUSG00000068250.13 ENSMUSG00000068250 ENSMUST00000203043 Amn1 protein_coding Interval_19097 chr10 94531308 94532152 + 0 NA intron (ENSMUSG00000020023.18, intron 1 of 3) protein_coding-intron (ENSMUSG00000020023.18, intron 1 of 3) -19122 ENSMUSG00000020023.18 ENSMUSG00000020023 ENSMUST00000117929 Tmcc3 protein_coding Interval_143733 chr7 15971692 15972887 + 0 NA intron (ENSMUSG00000109984.1, intron 1 of 3) lincRNA-intron (ENSMUSG00000109984.1, intron 1 of 3) 406 ENSMUSG00000109984.1 ENSMUSG00000109984 ENSMUST00000210035 Gm38948 lincRNA Interval_21959 chr11 5429154 5429491 + 0 NA intron (ENSMUSG00000041961.14, intron 1 of 3) protein_coding-intron (ENSMUSG00000041961.14, intron 1 of 8) -47582 ENSMUSG00000041961.14 ENSMUSG00000041961 ENSMUST00000143746 Znrf3 protein_coding Interval_154574 chr8 20990296 20990528 + 0 NA Intergenic Intergenic -35133 ENSMUSG00000074447.2 ENSMUSG00000074447 ENSMUST00000076754 Defa21 protein_coding Interval_159726 chr8 99537729 99537926 + 0 NA intron (ENSMUSG00000052479.5, intron 1 of 4) lincRNA-intron (ENSMUSG00000052479.5, intron 1 of 4) -31057 ENSMUSG00000090116.1 ENSMUSG00000090116 ENSMUST00000161597 Gm15680 sense_overlapping Interval_43918 chr13 38044439 38044678 + 0 NA TTS (ENSMUSG00000021428.9) protein_coding-TTS (ENSMUSG00000021428.9) 5511 ENSMUSG00000021428.9 ENSMUSG00000021428 ENSMUST00000225174 Riok1 protein_coding Interval_8029 chr1 135295142 135295337 + 0 NA TTS (ENSMUSG00000062580.9) protein_coding-TTS (ENSMUSG00000062580.9) 14600 ENSMUSG00000062580.9 ENSMUSG00000062580 ENSMUST00000125454 Timm17a protein_coding Interval_78748 chr18 20190447 20191535 + 0 NA Intergenic Intergenic -56349 ENSMUSG00000034774.6 ENSMUSG00000034774 ENSMUST00000054128 Dsg1c protein_coding Interval_58191 chr15 30578937 30579159 + 0 NA intron (ENSMUSG00000022240.10, intron 3 of 5) protein_coding-intron (ENSMUSG00000022240.10, intron 3 of 22) -11239 ENSMUSG00000087836.1 ENSMUSG00000087836 ENSMUST00000157211 Gm23956 rRNA Interval_24666 chr11 35760671 35761126 + 0 NA Intergenic Intergenic -8586 ENSMUSG00000018846.8 ENSMUSG00000018846 ENSMUST00000018990 Pank3 protein_coding Interval_156965 chr8 62924255 62924442 + 0 NA Intergenic Intergenic -27577 ENSMUSG00000054162.15 ENSMUSG00000054162 ENSMUST00000141513 Spock3 protein_coding Interval_60605 chr15 75633427 75634900 + 0 NA exon (ENSMUSG00000115969.1, exon 2 of 2) lincRNA-exon (ENSMUSG00000115969.1, exon 2 of 2) 1747 ENSMUSG00000115969.1 ENSMUSG00000115969 ENSMUST00000229763 Gm46519 lincRNA Interval_138629 chr6 90546427 90546881 + 0 NA intron (ENSMUSG00000030088.15, intron 1 of 2) protein_coding-intron (ENSMUSG00000030088.15, intron 1 of 2) -4194 ENSMUSG00000030088.15 ENSMUSG00000030088 ENSMUST00000137669 Aldh1l1 protein_coding Interval_41431 chr12 113833826 113834284 + 0 NA Intergenic Intergenic 4955 ENSMUSG00000094194.2 ENSMUSG00000094194 ENSMUST00000193652 Ighv5-16 IG_V_gene Interval_136048 chr6 50318606 50319167 + 0 NA intron (ENSMUSG00000029822.15, intron 15 of 19) protein_coding-intron (ENSMUSG00000029822.15, intron 15 of 21) 33071 ENSMUSG00000029822.15 ENSMUSG00000029822 ENSMUST00000154333 Osbpl3 protein_coding Interval_170844 chr9 111110675 111111225 + 0 NA Intergenic Intergenic 35556 ENSMUSG00000088296.1 ENSMUSG00000088296 ENSMUST00000157671 Gm26409 snRNA Interval_76891 chr17 84763491 84763683 + 0 NA intron (ENSMUSG00000024120.12, intron 13 of 37) protein_coding-intron (ENSMUSG00000024120.12, intron 13 of 37) -21205 ENSMUSG00000117412.1 ENSMUSG00000117412 ENSMUST00000234983 Gm49979 TEC Interval_163063 chr9 14934578 14935363 + 0 NA Intergenic Intergenic -14493 ENSMUSG00000110766.1 ENSMUSG00000110766 ENSMUST00000217210 Gm47214 lincRNA Interval_64185 chr16 8899844 8900402 + 0 NA Intergenic Intergenic 22266 ENSMUSG00000068674.3 ENSMUSG00000068674 ENSMUST00000090395 Gm10247 processed_pseudogene Interval_31062 chr11 97947171 97947722 + 0 NA intron (ENSMUSG00000017417.14, intron 6 of 7) protein_coding-intron (ENSMUSG00000017417.14, intron 7 of 13) -5706 ENSMUSG00000093013.1 ENSMUSG00000093013 ENSMUST00000175272 Gm22461 miRNA Interval_153831 chr8 9346907 9349323 + 0 NA intron (ENSMUSG00000079157.4, intron 1 of 3) protein_coding-intron (ENSMUSG00000079157.4, intron 1 of 2) -2989 ENSMUSG00000109286.1 ENSMUSG00000109286 ENSMUST00000207837 Gm44541 TEC Interval_104405 chr3 65367530 65368031 + 0 NA intron (ENSMUSG00000027827.17, intron 12 of 13) protein_coding-intron (ENSMUSG00000027827.17, intron 12 of 13) 15601 ENSMUSG00000027828.12 ENSMUSG00000027828 ENSMUST00000119896 Ssr3 protein_coding Interval_120299 chr4 145276789 145277189 + 0 NA intron (ENSMUSG00000028602.12, intron 11 of 12) protein_coding-intron (ENSMUSG00000028602.12, intron 11 of 12) -30119 ENSMUSG00000028599.10 ENSMUSG00000028599 ENSMUST00000143055 Tnfrsf1b protein_coding Interval_28220 chr11 74461095 74461620 + 0 NA intron (ENSMUSG00000038807.19, intron 4 of 25) protein_coding-intron (ENSMUSG00000038807.19, intron 4 of 25) 99288 ENSMUSG00000058275.3 ENSMUSG00000058275 ENSMUST00000077794 Olfr412 protein_coding Interval_143312 chr7 5103630 5103879 + 0 NA Intergenic Intergenic 13196 ENSMUSG00000035191.15 ENSMUSG00000035191 ENSMUST00000208468 Rfpl4 protein_coding Interval_65742 chr16 26866303 26867562 + 0 NA Intergenic Intergenic 101313 ENSMUSG00000068428.7 ENSMUSG00000068428 ENSMUST00000231299 Gmnc protein_coding Interval_103838 chr3 53525523 53526275 + 0 NA exon (ENSMUSG00000037016.11, exon 17 of 24) protein_coding-exon (ENSMUSG00000037016.11, exon 17 of 24) -2879 ENSMUSG00000037016.11 ENSMUSG00000037016 ENSMUST00000199323 Frem2 protein_coding Interval_3245 chr1 55130849 55132263 + 0 NA exon (ENSMUSG00000025979.13, exon 1 of 8) protein_coding-exon (ENSMUSG00000025979.13, exon 1 of 8) 4259 ENSMUSG00000089670.1 ENSMUSG00000089670 ENSMUST00000160730 Gm16581 processed_pseudogene Interval_120204 chr4 144254898 144255626 + 0 NA Intergenic Intergenic 7485 ENSMUSG00000083708.1 ENSMUSG00000083708 ENSMUST00000122173 Gm13123 processed_pseudogene Interval_173040 chrX 67225511 67225918 + 0 NA Intergenic Intergenic -55484 ENSMUSG00000081598.1 ENSMUSG00000081598 ENSMUST00000119380 Gm8312 processed_pseudogene Interval_158769 chr8 86215282 86216385 + 0 NA Intergenic Intergenic -18021 ENSMUSG00000088192.1 ENSMUSG00000088192 ENSMUST00000157567 Gm23904 snoRNA Interval_152869 chr7 138923711 138924315 + 0 NA Intergenic Intergenic 6203 ENSMUSG00000110319.1 ENSMUSG00000110319 ENSMUST00000211271 Gm45668 processed_pseudogene Interval_90741 chr2 32226465 32227081 + 0 NA intron (ENSMUSG00000039262.16, intron 26 of 28) protein_coding-intron (ENSMUSG00000039262.16, intron 28 of 29) 1120 ENSMUSG00000094251.1 ENSMUSG00000094251 ENSMUST00000083112 Gm25632 snoRNA Interval_92474 chr2 59997308 59998378 + 0 NA intron (ENSMUSG00000026987.16, intron 4 of 5) protein_coding-intron (ENSMUSG00000026987.16, intron 2 of 33) -5499 ENSMUSG00000081236.1 ENSMUSG00000081236 ENSMUST00000120482 Gm13574 processed_pseudogene Interval_65628 chr16 24392234 24394652 + 0 NA promoter-TSS (ENSMUSG00000033306.15) protein_coding-promoter-TSS (ENSMUSG00000033306.15) 12974 ENSMUSG00000087861.1 ENSMUSG00000087861 ENSMUST00000157236 Gm24440 snRNA Interval_20121 chr10 115050271 115052349 + 0 NA Intergenic Intergenic 59769 ENSMUSG00000096208.1 ENSMUSG00000096208 ENSMUST00000178475 Gm22070 snRNA Interval_7598 chr1 132431772 132431948 + 0 NA intron (ENSMUSG00000042046.15, intron 3 of 3) protein_coding-intron (ENSMUSG00000042046.15, intron 1 of 12) -30549 ENSMUSG00000042046.15 ENSMUSG00000042046 ENSMUST00000191494 Dstyk protein_coding Interval_1 GL456210.1 560 978 + 0 NA NA NA NA NA Interval_99043 chr2 156822814 156823976 + 0 NA Intergenic Intergenic 16497 ENSMUSG00000087179.8 ENSMUSG00000087179 ENSMUST00000134838 Gm14230 lincRNA Interval_95732 chr2 115499391 115500056 + 0 NA intron (ENSMUSG00000085582.7, intron 1 of 2) lincRNA-intron (ENSMUSG00000085582.7, intron 1 of 2) 28021 ENSMUSG00000085582.7 ENSMUSG00000085582 ENSMUST00000125147 3110099E03Rik lincRNA Interval_101991 chr3 14599100 14599355 + 0 NA intron (ENSMUSG00000027552.14, intron 3 of 7) protein_coding-intron (ENSMUSG00000027552.14, intron 3 of 7) 12016 ENSMUSG00000078784.8 ENSMUSG00000078784 ENSMUST00000190064 Rbis protein_coding Interval_91764 chr2 49371374 49372403 + 0 NA Intergenic Intergenic 26627 ENSMUSG00000077769.1 ENSMUSG00000077769 ENSMUST00000104581 Gm25215 snoRNA Interval_25005 chr11 42941837 42942094 + 0 NA Intergenic Intergenic 44470 ENSMUSG00000084627.1 ENSMUSG00000084627 ENSMUST00000122678 Gm25543 misc_RNA Interval_10481 chr1 171246725 171248182 + 0 NA promoter-TSS (ENSMUSG00000013593.12) protein_coding-promoter-TSS (ENSMUSG00000013593.12) -2970 ENSMUSG00000006403.13 ENSMUSG00000006403 ENSMUST00000111314 Adamts4 protein_coding Interval_67396 chr16 48308631 48311636 + 0 NA promoter-TSS (ENSMUSG00000072419.5) protein_coding-promoter-TSS (ENSMUSG00000072419.5) 6225 ENSMUSG00000072419.5 ENSMUSG00000072419 ENSMUST00000097175 Dppa2 protein_coding Interval_124582 chr5 51809472 51809674 + 0 NA Intergenic Intergenic 49202 ENSMUSG00000105663.1 ENSMUSG00000105663 ENSMUST00000195938 Gm43606 TEC Interval_117291 chr4 122760402 122761426 + 0 NA Intergenic Intergenic -26181 ENSMUSG00000084082.1 ENSMUSG00000084082 ENSMUST00000121835 Gm12872 unprocessed_pseudogene Interval_18666 chr10 88946133 88946426 + 0 NA Intergenic Intergenic 60287 ENSMUSG00000020062.7 ENSMUSG00000020062 ENSMUST00000020255 Slc5a8 protein_coding Interval_22762 chr11 14954685 14955578 + 0 NA Intergenic Intergenic -94027 ENSMUSG00000084183.1 ENSMUSG00000084183 ENSMUST00000121361 Gm12009 processed_pseudogene Interval_17305 chr10 75725211 75725634 + 0 NA promoter-TSS (ENSMUSG00000020196.10) protein_coding-promoter-TSS (ENSMUSG00000020196.10) 7198 ENSMUSG00000020196.10 ENSMUSG00000020196 ENSMUST00000218480 Cabin1 protein_coding Interval_63967 chr16 4896900 4897549 + 0 NA intron (ENSMUSG00000022517.17, intron 1 of 16) protein_coding-intron (ENSMUSG00000022517.17, intron 1 of 15) 10838 ENSMUSG00000022517.17 ENSMUSG00000022517 ENSMUST00000230108 Mgrn1 protein_coding Interval_59525 chr15 55015915 55016361 + 0 NA TTS (ENSMUSG00000037343.8) protein_coding-TTS (ENSMUSG00000037343.8) 6644 ENSMUSG00000037343.8 ENSMUSG00000037343 ENSMUST00000227254 Taf2 protein_coding Interval_92882 chr2 68076520 68076901 + 0 NA intron (ENSMUSG00000034780.6, intron 4 of 4) protein_coding-intron (ENSMUSG00000034780.6, intron 4 of 4) -5081 ENSMUSG00000081257.1 ENSMUSG00000081257 ENSMUST00000117875 Gm13607 processed_pseudogene Interval_2695 chr1 43496949 43497256 + 0 NA intron (ENSMUSG00000066877.11, intron 1 of 4) protein_coding-intron (ENSMUSG00000066877.11, intron 1 of 4) 8655 ENSMUSG00000103422.1 ENSMUSG00000103422 ENSMUST00000194710 Gm37536 TEC Interval_83839 chr19 5023430 5024729 + 0 NA promoter-TSS (ENSMUSG00000024891.6) protein_coding-promoter-TSS (ENSMUSG00000024891.6) -35 ENSMUSG00000024891.6 ENSMUSG00000024891 ENSMUST00000237267 Slc29a2 protein_coding Interval_25204 chr11 45332883 45333132 + 0 NA Intergenic Intergenic -36617 ENSMUSG00000104099.1 ENSMUSG00000104099 ENSMUST00000195753 Gm37312 TEC Interval_161836 chr8 123110410 123111115 + 0 NA intron (ENSMUSG00000092329.1, intron 1 of 15) protein_coding-intron (ENSMUSG00000092329.1, intron 1 of 15) 5787 ENSMUSG00000098550.1 ENSMUSG00000098550 ENSMUST00000184697 Mir7079 miRNA Interval_99317 chr2 158899336 158899834 + 0 NA Intergenic Intergenic 72167 ENSMUSG00000027655.14 ENSMUSG00000027655 ENSMUST00000143195 Dhx35 protein_coding Interval_81399 chr18 60500641 60502808 + 0 NA promoter-TSS (ENSMUSG00000038059.7) protein_coding-promoter-TSS (ENSMUSG00000038059.7) -148 ENSMUSG00000038059.7 ENSMUSG00000038059 ENSMUST00000237270 Smim3 protein_coding Interval_90044 chr2 27496544 27496947 + 0 NA intron (ENSMUSG00000026918.16, intron 1 of 11) protein_coding-intron (ENSMUSG00000026918.16, intron 1 of 11) -18412 ENSMUSG00000026917.15 ENSMUSG00000026917 ENSMUST00000125088 Wdr5 protein_coding Interval_86144 chr19 37032963 37033722 + 0 NA intron (ENSMUSG00000039652.16, intron 10 of 10) protein_coding-intron (ENSMUSG00000039652.16, intron 10 of 10) 73157 ENSMUSG00000040565.8 ENSMUSG00000040565 ENSMUST00000236343 Btaf1 protein_coding Interval_119251 chr4 136454702 136455218 + 0 NA Intergenic Intergenic -7290 ENSMUSG00000066178.4 ENSMUSG00000066178 ENSMUST00000084593 6030445D17Rik lincRNA Interval_146867 chr7 54049920 54050799 + 0 NA Intergenic Intergenic -41779 ENSMUSG00000099089.1 ENSMUSG00000099089 ENSMUST00000183968 Gm27921 miRNA Interval_43401 chr13 30084911 30085654 + 0 NA Intergenic Intergenic -13211 ENSMUSG00000113366.1 ENSMUSG00000113366 ENSMUST00000220600 Gm47259 TEC Interval_89305 chr2 19076534 19077112 + 0 NA Intergenic Intergenic 26275 ENSMUSG00000083281.1 ENSMUSG00000083281 ENSMUST00000120451 Gm13332 processed_pseudogene Interval_140612 chr6 120091020 120092393 + 0 NA Intergenic Intergenic -1644 ENSMUSG00000041377.12 ENSMUSG00000041377 ENSMUST00000035244 Ninj2 protein_coding Interval_95968 chr2 118761942 118764775 + 0 NA promoter-TSS (ENSMUSG00000045838.8) protein_coding-promoter-TSS (ENSMUSG00000045838.8) -733 ENSMUSG00000045838.8 ENSMUSG00000045838 ENSMUST00000151270 Ccdc9b protein_coding Interval_76135 chr17 75387312 75388258 + 0 NA intron (ENSMUSG00000001870.16, intron 33 of 34) protein_coding-intron (ENSMUSG00000001870.16, intron 32 of 33) -48111 ENSMUSG00000071042.12 ENSMUSG00000071042 ENSMUST00000234011 Rasgrp3 protein_coding Interval_21427 chr10 128536179 128538765 + 0 NA intron (ENSMUSG00000100548.1, intron 1 of 2) antisense-intron (ENSMUSG00000100548.1, intron 1 of 2) 10167 ENSMUSG00000039810.11 ENSMUSG00000039810 ENSMUST00000133458 Zc3h10 protein_coding Interval_22905 chr11 17256759 17258210 + 0 NA promoter-TSS (ENSMUSG00000000581.8) protein_coding-promoter-TSS (ENSMUSG00000000581.8) -204 ENSMUSG00000000581.8 ENSMUSG00000000581 ENSMUST00000130330 C1d protein_coding Interval_148645 chr7 83794139 83795214 + 0 NA promoter-TSS (ENSMUSG00000011154.17) protein_coding-promoter-TSS (ENSMUSG00000011154.17) -10664 ENSMUSG00000011154.17 ENSMUSG00000011154 ENSMUST00000149671 Cfap161 protein_coding Interval_154260 chr8 13889237 13890626 + 0 NA promoter-TSS (ENSMUSG00000031458.8) protein_coding-promoter-TSS (ENSMUSG00000031458.8) 350 ENSMUSG00000031458.8 ENSMUSG00000031458 ENSMUST00000210749 Coprs protein_coding Interval_42802 chr13 19697664 19699415 + 0 NA promoter-TSS (ENSMUSG00000041138.16) protein_coding-promoter-TSS (ENSMUSG00000041138.16) -22808 ENSMUSG00000041138.16 ENSMUSG00000041138 ENSMUST00000223286 Nme8 protein_coding Interval_89788 chr2 25442517 25442884 + 0 NA promoter-TSS (ENSMUSG00000026944.18) protein_coding-promoter-TSS (ENSMUSG00000026944.18) -79 ENSMUSG00000104741.1 ENSMUSG00000104741 ENSMUST00000199405 Mir3087 miRNA Interval_99008 chr2 156630226 156630770 + 0 NA intron (ENSMUSG00000061689.15, intron 1 of 12) protein_coding-intron (ENSMUSG00000061689.15, intron 1 of 12) 2970 ENSMUSG00000083498.1 ENSMUSG00000083498 ENSMUST00000118255 Gm14172 processed_pseudogene Interval_167823 chr9 72883591 72884383 + 0 NA intron (ENSMUSG00000036030.9, intron 11 of 19) protein_coding-intron (ENSMUSG00000036030.9, intron 11 of 19) -5058 ENSMUSG00000102330.1 ENSMUSG00000102330 ENSMUST00000193259 Gm37234 TEC Interval_69966 chr17 3566176 3566494 + 0 NA Intergenic Intergenic 8511 ENSMUSG00000116852.1 ENSMUSG00000116852 ENSMUST00000231344 1700102H20Rik lincRNA Interval_133814 chr6 12608262 12609146 + 0 NA promoter-TSS (ENSMUSG00000107422.1) lincRNA-promoter-TSS (ENSMUSG00000107422.1) -292 ENSMUSG00000107422.1 ENSMUSG00000107422 ENSMUST00000203511 Gm44129 lincRNA Interval_74116 chr17 46613508 46613699 + 0 NA intron (ENSMUSG00000023972.10, intron 1 of 19) protein_coding-intron (ENSMUSG00000023972.10, intron 1 of 19) 32419 ENSMUSG00000003546.10 ENSMUSG00000003546 ENSMUST00000003642 Klc4 protein_coding Interval_27423 chr11 67532772 67533177 + 0 NA intron (ENSMUSG00000033066.16, intron 1 of 6) protein_coding-intron (ENSMUSG00000033066.16, intron 1 of 13) 44492 ENSMUSG00000087058.1 ENSMUSG00000087058 ENSMUST00000152963 Gm12301 antisense Interval_4969 chr1 83060898 83061531 + 0 NA exon (ENSMUSG00000101315.1, exon 1 of 1) protein_coding-exon (ENSMUSG00000101315.1, exon 1 of 1) 284 ENSMUSG00000101315.1 ENSMUSG00000101315 ENSMUST00000188005 Krtap28-13 protein_coding Interval_89187 chr2 17935536 17937016 + 0 NA Intergenic Intergenic 60682 ENSMUSG00000062651.4 ENSMUSG00000062651 ENSMUST00000105001 H2al2a protein_coding Interval_9044 chr1 153265049 153265849 + 0 NA intron (ENSMUSG00000026478.14, intron 1 of 27) protein_coding-intron (ENSMUSG00000026478.14, intron 1 of 27) 21741 ENSMUSG00000103818.1 ENSMUSG00000103818 ENSMUST00000194884 Gm38009 TEC Interval_34180 chr11 121136398 121136834 + 0 NA Intergenic Intergenic -9541 ENSMUSG00000039329.8 ENSMUSG00000039329 ENSMUST00000155694 Tex19.1 protein_coding Interval_125401 chr5 66698561 66698839 + 0 NA Intergenic Intergenic 9818 ENSMUSG00000107300.1 ENSMUSG00000107300 ENSMUST00000202376 Gm43279 TEC Interval_44053 chr13 40573146 40573467 + 0 NA intron (ENSMUSG00000114198.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000114198.1, intron 1 of 1) 33173 ENSMUSG00000114198.1 ENSMUSG00000114198 ENSMUST00000223618 Gm47039 lincRNA Interval_154146 chr8 13050315 13051008 + 0 NA exon (ENSMUSG00000031444.16, exon 7 of 9) protein_coding-exon (ENSMUSG00000031444.16, exon 7 of 9) -10282 ENSMUSG00000031445.5 ENSMUSG00000031445 ENSMUST00000033822 Proz protein_coding Interval_4702 chr1 77451358 77452160 + 0 NA intron (ENSMUSG00000026235.14, intron 2 of 15) protein_coding-intron (ENSMUSG00000026235.14, intron 3 of 17) 45009 ENSMUSG00000099141.1 ENSMUSG00000099141 ENSMUST00000184495 Mir6352 miRNA Interval_82059 chr18 67416865 67417570 + 0 NA intron (ENSMUSG00000024527.10, intron 7 of 9) protein_coding-intron (ENSMUSG00000024527.10, intron 12 of 16) 18731 ENSMUSG00000024527.10 ENSMUSG00000024527 ENSMUST00000236810 Afg3l2 protein_coding Interval_122895 chr5 27020471 27021519 + 0 NA intron (ENSMUSG00000061576.15, intron 1 of 25) protein_coding-intron (ENSMUSG00000061576.15, intron 1 of 25) -13374 ENSMUSG00000081970.1 ENSMUSG00000081970 ENSMUST00000120811 Gm16057 processed_pseudogene Interval_94541 chr2 92041535 92042199 + 0 NA Intergenic Intergenic -17365 ENSMUSG00000027230.9 ENSMUSG00000027230 ENSMUST00000028663 Creb3l1 protein_coding Interval_86212 chr19 37834191 37834470 + 0 NA Intergenic Intergenic -35940 ENSMUSG00000118115.1 ENSMUSG00000118115 ENSMUST00000237198 Gm4757 processed_pseudogene Interval_58975 chr15 41190654 41191362 + 0 NA Intergenic Intergenic 17521 ENSMUSG00000048559.5 ENSMUSG00000048559 ENSMUST00000060066 4930555K19Rik processed_pseudogene Interval_122568 chr5 23837528 23838739 + 0 NA TTS (ENSMUSG00000028998.6) protein_coding-TTS (ENSMUSG00000028998.6) -1812 ENSMUSG00000065329.1 ENSMUSG00000065329 ENSMUST00000083395 Gm22054 snRNA Interval_156555 chr8 51242109 51242398 + 0 NA Intergenic Intergenic -33637 ENSMUSG00000109691.1 ENSMUSG00000109691 ENSMUST00000210651 Gm8679 processed_pseudogene Interval_113802 chr4 58925762 58926085 + 0 NA Intergenic Intergenic -12102 ENSMUSG00000092753.1 ENSMUSG00000092753 ENSMUST00000175012 Gm26400 rRNA Interval_7849 chr1 134115650 134115940 + 0 NA intron (ENSMUSG00000026450.14, intron 1 of 10) protein_coding-intron (ENSMUSG00000026450.14, intron 1 of 11) 4553 ENSMUSG00000026450.14 ENSMUSG00000026450 ENSMUST00000086475 Chit1 protein_coding Interval_56813 chr14 122244013 122244701 + 0 NA intron (ENSMUSG00000025545.10, intron 1 of 7) protein_coding-intron (ENSMUSG00000025545.10, intron 1 of 7) -10703 ENSMUSG00000100585.1 ENSMUSG00000100585 ENSMUST00000187423 1700108J01Rik antisense Interval_170005 chr9 103562032 103562273 + 0 NA intron (ENSMUSG00000099616.1, intron 1 of 2) protein_coding-intron (ENSMUSG00000042757.16, intron 2 of 4) 5062 ENSMUSG00000099616.1 ENSMUSG00000099616 ENSMUST00000190332 4932413F04Rik antisense Interval_85759 chr19 30504907 30506113 + 0 NA Intergenic Intergenic -14225 ENSMUSG00000118374.1 ENSMUSG00000118374 ENSMUST00000236809 Gm17885 processed_pseudogene Interval_10383 chr1 170174265 170175519 + 0 NA promoter-TSS (ENSMUSG00000026670.15) protein_coding-promoter-TSS (ENSMUSG00000026670.15) -126 ENSMUSG00000026670.15 ENSMUSG00000026670 ENSMUST00000191690 Uap1 protein_coding Interval_131939 chr5 140924800 140925680 + 0 NA intron (ENSMUSG00000036526.8, intron 2 of 2) protein_coding-intron (ENSMUSG00000036526.8, intron 2 of 24) 75231 ENSMUSG00000036526.8 ENSMUSG00000036526 ENSMUST00000199091 Card11 protein_coding Interval_29291 chr11 82728930 82729133 + 0 NA TTS (ENSMUSG00000083371.1) processed_pseudogene-TTS (ENSMUSG00000083371.1) 1031 ENSMUSG00000083371.1 ENSMUSG00000083371 ENSMUST00000118925 Gm11422 processed_pseudogene Interval_165644 chr9 50638176 50638942 + 0 NA intron (ENSMUSG00000000168.9, intron 2 of 4) protein_coding-intron (ENSMUSG00000000168.9, intron 11 of 13) 11336 ENSMUSG00000000168.9 ENSMUSG00000000168 ENSMUST00000155417 Dlat protein_coding Interval_1365 chr1 21002626 21002937 + 0 NA intron (ENSMUSG00000041779.5, intron 10 of 10) protein_coding-intron (ENSMUSG00000041779.5, intron 10 of 10) 40875 ENSMUSG00000041779.5 ENSMUSG00000041779 ENSMUST00000187210 Tram2 protein_coding Interval_113075 chr4 47518675 47519556 + 0 NA Intergenic Intergenic 44351 ENSMUSG00000053317.11 ENSMUSG00000053317 ENSMUST00000136685 Sec61b protein_coding Interval_44721 chr13 47771090 47771417 + 0 NA Intergenic Intergenic 103703 ENSMUSG00000114509.1 ENSMUSG00000114509 ENSMUST00000223996 4930471G24Rik lincRNA Interval_41922 chr13 4560499 4560900 + 0 NA Intergenic Intergenic -13376 ENSMUSG00000021207.9 ENSMUSG00000021207 ENSMUST00000137279 Akr1c21 protein_coding Interval_72817 chr17 32356724 32357823 + 0 NA exon (ENSMUSG00000024050.18, exon 6 of 8) protein_coding-exon (ENSMUSG00000024050.18, exon 6 of 8) -20720 ENSMUSG00000002625.10 ENSMUSG00000002625 ENSMUST00000235387 Akap8l protein_coding Interval_95600 chr2 112670538 112670832 + 0 NA exon (ENSMUSG00000057378.15, exon 75 of 103) protein_coding-exon (ENSMUSG00000057378.15, exon 75 of 103) -14137 ENSMUSG00000057378.15 ENSMUSG00000057378 ENSMUST00000208135 Ryr3 protein_coding Interval_173675 chrX 101791078 101791797 + 0 NA intron (ENSMUSG00000045010.14, intron 3 of 5) protein_coding-intron (ENSMUSG00000045010.14, intron 3 of 3) 2986 ENSMUSG00000045010.14 ENSMUSG00000045010 ENSMUST00000056225 Gm4779 protein_coding Interval_105486 chr3 86959690 86960041 + 0 NA Intergenic Intergenic -26202 ENSMUSG00000103650.1 ENSMUSG00000103650 ENSMUST00000194284 Gm37207 processed_pseudogene Interval_33114 chr11 114541628 114542840 + 0 NA Intergenic Intergenic -93374 ENSMUSG00000062391.3 ENSMUSG00000062391 ENSMUST00000141088 4932435O22Rik lincRNA Interval_4106 chr1 68468939 68469927 + 0 NA intron (ENSMUSG00000062209.15, intron 3 of 18) protein_coding-intron (ENSMUSG00000062209.15, intron 3 of 27) -84398 ENSMUSG00000080539.1 ENSMUSG00000080539 ENSMUST00000116889 Gm25542 snRNA Interval_131055 chr5 134799945 134800298 + 0 NA intron (ENSMUSG00000107318.1, intron 2 of 4) antisense-intron (ENSMUSG00000107318.1, intron 2 of 4) 53079 ENSMUSG00000107318.1 ENSMUSG00000107318 ENSMUST00000200700 Gm30003 antisense Interval_75928 chr17 73133735 73133930 + 0 NA intron (ENSMUSG00000054469.14, intron 1 of 5) protein_coding-intron (ENSMUSG00000054469.14, intron 1 of 5) 7405 ENSMUSG00000054469.14 ENSMUSG00000054469 ENSMUST00000134149 Lclat1 protein_coding Interval_108226 chr3 122618563 122620877 + 0 NA promoter-TSS (ENSMUSG00000039735.16) protein_coding-promoter-TSS (ENSMUSG00000039735.16) -5 ENSMUSG00000039735.16 ENSMUSG00000039735 ENSMUST00000162884 Fnbp1l protein_coding Interval_166309 chr9 58234194 58235189 + 0 NA exon (ENSMUSG00000036986.16, exon 3 of 9) protein_coding-exon (ENSMUSG00000036986.16, exon 3 of 9) -4564 ENSMUSG00000036986.16 ENSMUSG00000036986 ENSMUST00000124982 Pml protein_coding Interval_1974 chr1 35266547 35266903 + 0 NA Intergenic Intergenic -87641 ENSMUSG00000077231.1 ENSMUSG00000077231 ENSMUST00000104043 Gm25096 snoRNA Interval_1749 chr1 33515191 33515502 + 0 NA intron (ENSMUSG00000026134.11, intron 2 of 5) protein_coding-intron (ENSMUSG00000026134.11, intron 8 of 13) 33245 ENSMUSG00000101682.1 ENSMUSG00000101682 ENSMUST00000185489 Gm29228 processed_pseudogene Interval_34125 chr11 120779619 120780404 + 0 NA TTS (ENSMUSG00000025158.7) protein_coding-TTS (ENSMUSG00000025158.7) 4174 ENSMUSG00000025158.7 ENSMUSG00000025158 ENSMUST00000026156 Rfng protein_coding Interval_150160 chr7 107479369 107479839 + 0 NA intron (ENSMUSG00000062542.11, intron 3 of 6) protein_coding-intron (ENSMUSG00000062542.11, intron 3 of 6) -24458 ENSMUSG00000062542.11 ENSMUSG00000062542 ENSMUST00000127444 Syt9 protein_coding Interval_124488 chr5 48869648 48869953 + 0 NA intron (ENSMUSG00000029088.16, intron 1 of 8) protein_coding-intron (ENSMUSG00000029088.16, intron 1 of 8) 19757 ENSMUSG00000029088.16 ENSMUSG00000029088 ENSMUST00000101214 Kcnip4 protein_coding Interval_57846 chr15 23035714 23037312 + 0 NA promoter-TSS (ENSMUSG00000040420.15) protein_coding-promoter-TSS (ENSMUSG00000040420.15) 101026 ENSMUSG00000091194.1 ENSMUSG00000091194 ENSMUST00000169624 Gm19840 processed_pseudogene Interval_61333 chr15 80912996 80913252 + 0 NA intron (ENSMUSG00000047888.10, intron 9 of 16) protein_coding-intron (ENSMUSG00000047888.10, intron 17 of 24) -9940 ENSMUSG00000047888.10 ENSMUSG00000047888 ENSMUST00000228525 Tnrc6b protein_coding Interval_23703 chr11 24811303 24812263 + 0 NA Intergenic Intergenic -81061 ENSMUSG00000073103.2 ENSMUSG00000073103 ENSMUST00000101450 Gm10466 lincRNA Interval_99402 chr2 160645337 160646979 + 0 NA exon (ENSMUSG00000070544.6, exon 1 of 21) protein_coding-exon (ENSMUSG00000070544.6, exon 1 of 21) 21690 ENSMUSG00000094247.1 ENSMUSG00000094247 ENSMUST00000175047 Gm23968 miRNA Interval_15037 chr10 42133906 42134385 + 0 NA Intergenic Intergenic -78839 ENSMUSG00000085666.3 ENSMUSG00000085666 ENSMUST00000121229 Tdg-ps2 processed_pseudogene Interval_154741 chr8 23022653 23022994 + 0 NA intron (ENSMUSG00000031543.18, intron 1 of 43) protein_coding-intron (ENSMUSG00000031543.18, intron 1 of 42) -64382 ENSMUSG00000109793.1 ENSMUSG00000109793 ENSMUST00000210691 Gm10043 processed_pseudogene Interval_104401 chr3 65317776 65318617 + 0 NA intron (ENSMUSG00000027827.17, intron 7 of 13) protein_coding-intron (ENSMUSG00000027827.17, intron 7 of 13) -15511 ENSMUSG00000104093.1 ENSMUSG00000104093 ENSMUST00000195489 A330015K06Rik antisense Interval_132043 chr5 142457282 142457736 + 0 NA exon (ENSMUSG00000056493.9, exon 9 of 9) protein_coding-exon (ENSMUSG00000056493.9, exon 9 of 9) -6435 ENSMUSG00000039623.13 ENSMUSG00000039623 ENSMUST00000197293 Ap5z1 protein_coding Interval_62799 chr15 97063010 97063898 + 0 NA Intergenic Intergenic -43503 ENSMUSG00000022464.14 ENSMUSG00000022464 ENSMUST00000230907 Slc38a4 protein_coding Interval_26273 chr11 55576968 55577179 + 0 NA intron (ENSMUSG00000000263.15, intron 1 of 8) protein_coding-intron (ENSMUSG00000000263.15, intron 1 of 8) 22133 ENSMUSG00000083363.1 ENSMUSG00000083363 ENSMUST00000120158 Gm12237 processed_pseudogene Interval_2102 chr1 36444565 36445906 + 0 NA promoter-TSS (ENSMUSG00000001143.13) protein_coding-promoter-TSS (ENSMUSG00000001143.13) 22 ENSMUSG00000001143.13 ENSMUSG00000001143 ENSMUST00000193502 Lman2l protein_coding Interval_34520 chr12 4873462 4875175 + 0 NA promoter-TSS (ENSMUSG00000037336.14) protein_coding-promoter-TSS (ENSMUSG00000037336.14) -5057 ENSMUSG00000037336.14 ENSMUSG00000037336 ENSMUST00000147241 Mfsd2b protein_coding Interval_76172 chr17 75937928 75938109 + 0 NA Intergenic Intergenic 76995 ENSMUSG00000117539.1 ENSMUSG00000117539 ENSMUST00000234389 Gm4710 lincRNA Interval_126541 chr5 90038713 90038965 + 0 NA Intergenic Intergenic -93390 ENSMUSG00000043618.9 ENSMUSG00000043618 ENSMUST00000135410 Eif5al3-ps processed_pseudogene Interval_1090 chr1 15483206 15484089 + 0 NA intron (ENSMUSG00000092083.4, intron 2 of 2) protein_coding-intron (ENSMUSG00000092083.4, intron 1 of 1) -72602 ENSMUSG00000104149.1 ENSMUSG00000104149 ENSMUST00000194564 Gm37138 TEC Interval_173053 chrX 68761727 68762360 + 0 NA exon (ENSMUSG00000062170.12, exon 1 of 5) protein_coding-exon (ENSMUSG00000062170.12, exon 1 of 5) 162 ENSMUSG00000062170.12 ENSMUSG00000062170 ENSMUST00000071848 Fmr1nb protein_coding Interval_110654 chr4 5725957 5726163 + 0 NA intron (ENSMUSG00000049119.14, intron 1 of 2) protein_coding-intron (ENSMUSG00000049119.14, intron 1 of 2) -38258 ENSMUSG00000077392.1 ENSMUSG00000077392 ENSMUST00000104204 Gm24337 snoRNA Interval_69335 chr16 92300670 92302255 + 0 NA intron (ENSMUSG00000051989.11, intron 1 of 2) protein_coding-intron (ENSMUSG00000051989.11, intron 1 of 3) 166 ENSMUSG00000051989.11 ENSMUSG00000051989 ENSMUST00000118064 Smim11 protein_coding Interval_91631 chr2 45019739 45020172 + 0 NA TTS (ENSMUSG00000026872.18) protein_coding-TTS (ENSMUSG00000026872.18) 3222 ENSMUSG00000092679.1 ENSMUSG00000092679 ENSMUST00000174938 Mir5129 miRNA Interval_73147 chr17 35088383 35089766 + 0 NA promoter-TSS (ENSMUSG00000007036.15) protein_coding-promoter-TSS (ENSMUSG00000007036.15) -240 ENSMUSG00000007036.15 ENSMUSG00000007036 ENSMUST00000173247 Abhd16a protein_coding Interval_133997 chr6 17606533 17606971 + 0 NA Intergenic Intergenic -30283 ENSMUSG00000015733.13 ENSMUSG00000015733 ENSMUST00000142592 Capza2 protein_coding Interval_21012 chr10 123254483 123254917 + 0 NA Intergenic Intergenic -9376 ENSMUSG00000044071.9 ENSMUSG00000044071 ENSMUST00000219723 Tafa2 protein_coding Interval_87573 chr19 53520377 53520591 + 0 NA Intergenic Intergenic -8625 ENSMUSG00000034765.6 ENSMUSG00000034765 ENSMUST00000038287 Dusp5 protein_coding Interval_42502 chr13 14200989 14202057 + 0 NA Intergenic Intergenic 20415 ENSMUSG00000113563.1 ENSMUSG00000113563 ENSMUST00000221355 Gm2492 processed_pseudogene Interval_114040 chr4 62690269 62690500 + 0 NA TTS (ENSMUSG00000059810.18) protein_coding-TTS (ENSMUSG00000059810.18) -15597 ENSMUSG00000085223.1 ENSMUSG00000085223 ENSMUST00000150203 Gm11210 lincRNA Interval_85709 chr19 29939427 29940062 + 0 NA intron (ENSMUSG00000024810.16, intron 2 of 3) protein_coding-intron (ENSMUSG00000024810.16, intron 1 of 7) 14612 ENSMUSG00000024810.16 ENSMUSG00000024810 ENSMUST00000136850 Il33 protein_coding Interval_52164 chr14 37591009 37591253 + 0 NA Intergenic Intergenic 15657 ENSMUSG00000114334.1 ENSMUSG00000114334 ENSMUST00000224767 Gm31393 lincRNA Interval_38305 chr12 77000018 77001124 + 0 NA intron (ENSMUSG00000112857.1, intron 2 of 3) lincRNA-intron (ENSMUSG00000112857.1, intron 2 of 3) 28111 ENSMUSG00000112857.1 ENSMUSG00000112857 ENSMUST00000219581 Gm35041 lincRNA Interval_106517 chr3 96828129 96829951 + 0 NA promoter-TSS (ENSMUSG00000038298.14) protein_coding-promoter-TSS (ENSMUSG00000038298.14) 311 ENSMUSG00000038304.14 ENSMUSG00000038304 ENSMUST00000047702 Cd160 protein_coding Interval_122803 chr5 25637863 25638282 + 0 NA Intergenic Intergenic -21737 ENSMUSG00000106144.1 ENSMUSG00000106144 ENSMUST00000181398 Gm43972 lincRNA Interval_147262 chr7 65273590 65274964 + 0 NA Intergenic Intergenic -60908 ENSMUSG00000108587.1 ENSMUSG00000108587 ENSMUST00000205499 1810049I09Rik lincRNA Interval_23948 chr11 28691066 28691263 + 0 NA intron (ENSMUSG00000084966.1, intron 2 of 2) lincRNA-intron (ENSMUSG00000084966.1, intron 2 of 2) 9600 ENSMUSG00000084966.1 ENSMUSG00000084966 ENSMUST00000146554 2810471M01Rik lincRNA Interval_33627 chr11 117610730 117611509 + 0 NA promoter-TSS (ENSMUSG00000054418.6) processed_transcript-promoter-TSS (ENSMUSG00000054418.6) -128 ENSMUSG00000054418.6 ENSMUSG00000054418 ENSMUST00000155384 2900041M22Rik processed_transcript Interval_37939 chr12 73167099 73167503 + 0 NA intron (ENSMUSG00000021103.12, intron 1 of 6) protein_coding-intron (ENSMUSG00000021103.12, intron 1 of 7) -21396 ENSMUSG00000077785.1 ENSMUSG00000077785 ENSMUST00000104597 Gm23910 snoRNA Interval_171943 chr9 122804985 122806237 + 0 NA promoter-TSS (ENSMUSG00000046603.16) protein_coding-promoter-TSS (ENSMUSG00000046603.16) 8 ENSMUSG00000046603.16 ENSMUSG00000046603 ENSMUST00000213178 Tcaim protein_coding Interval_174718 chrX 164046615 164046836 + 0 NA Intergenic Intergenic -18744 ENSMUSG00000031373.4 ENSMUSG00000031373 ENSMUST00000126650 Car5b protein_coding Interval_160866 chr8 114314488 114315608 + 0 NA intron (ENSMUSG00000046844.6, intron 7 of 8) protein_coding-intron (ENSMUSG00000046844.6, intron 7 of 8) 36431 ENSMUSG00000084848.1 ENSMUSG00000084848 ENSMUST00000139864 4933408N05Rik antisense Interval_150476 chr7 111011520 111011865 + 0 NA Intergenic Intergenic -29488 ENSMUSG00000005611.15 ENSMUSG00000005611 ENSMUST00000154466 Mrvi1 protein_coding Interval_33379 chr11 116215066 116216290 + 0 NA promoter-TSS (ENSMUSG00000092300.7) polymorphic_pseudogene-promoter-TSS (ENSMUSG00000092300.7) -808 ENSMUSG00000092300.7 ENSMUSG00000092300 ENSMUST00000173567 Cdk3 polymorphic_pseudogene Interval_84612 chr19 14425909 14427057 + 0 NA Intergenic Intergenic 169056 ENSMUSG00000024642.17 ENSMUSG00000024642 ENSMUST00000235975 Tle4 protein_coding Interval_108451 chr3 127339919 127340650 + 0 NA intron (ENSMUSG00000032826.19, intron 1 of 1) protein_coding-intron (ENSMUSG00000032826.19, intron 1 of 14) -40611 ENSMUSG00000106446.1 ENSMUSG00000106446 ENSMUST00000196407 Gm42970 TEC Interval_29868 chr11 87426394 87427594 + 0 NA promoter-TSS (ENSMUSG00000010342.16) protein_coding-promoter-TSS (ENSMUSG00000010342.16) 278 ENSMUSG00000096205.1 ENSMUSG00000096205 ENSMUST00000082761 Gm22068 snRNA Interval_161732 chr8 122407687 122408174 + 0 NA promoter-TSS (ENSMUSG00000017478.15) protein_coding-promoter-TSS (ENSMUSG00000017478.15) -14090 ENSMUSG00000046108.3 ENSMUSG00000046108 ENSMUST00000050963 Il17c protein_coding Interval_52433 chr14 46372115 46372678 + 0 NA Intergenic Intergenic -8731 ENSMUSG00000079261.2 ENSMUSG00000079261 ENSMUST00000147092 Gm15217 protein_coding Interval_68450 chr16 77008122 77008523 + 0 NA intron (ENSMUSG00000100857.2, intron 1 of 2) lincRNA-intron (ENSMUSG00000100857.2, intron 1 of 1) 2575 ENSMUSG00000100857.2 ENSMUSG00000100857 ENSMUST00000190317 1700041M19Rik lincRNA Interval_148732 chr7 84731862 84732414 + 0 NA intron (ENSMUSG00000085236.3, intron 1 of 4) antisense-intron (ENSMUSG00000085236.3, intron 1 of 4) -20989 ENSMUSG00000085236.3 ENSMUSG00000085236 ENSMUST00000168496 2610206C17Rik antisense Interval_104080 chr3 58414301 58417273 + 0 NA promoter-TSS (ENSMUSG00000027806.9) protein_coding-promoter-TSS (ENSMUSG00000027806.9) -91 ENSMUSG00000027806.9 ENSMUSG00000027806 ENSMUST00000196049 Tsc22d2 protein_coding Interval_168914 chr9 88564713 88565113 + 0 NA intron (ENSMUSG00000032425.15, intron 3 of 4) protein_coding-intron (ENSMUSG00000032425.15, intron 4 of 4) 11677 ENSMUSG00000092805.2 ENSMUSG00000092805 ENSMUST00000175064 Gm26461 misc_RNA Interval_152012 chr7 128266980 128267195 + 0 NA promoter-TSS (ENSMUSG00000030781.13) protein_coding-promoter-TSS (ENSMUSG00000030781.13) 1404 ENSMUSG00000030781.13 ENSMUSG00000030781 ENSMUST00000206703 Slc5a2 protein_coding Interval_18067 chr10 82047540 82048818 + 0 NA promoter-TSS (ENSMUSG00000061371.7) protein_coding-promoter-TSS (ENSMUSG00000061371.7) 9060 ENSMUSG00000112373.1 ENSMUSG00000112373 ENSMUST00000219748 Gm18556 processed_pseudogene Interval_142848 chr6 146404970 146405670 + 0 NA intron (ENSMUSG00000030287.15, intron 9 of 13) protein_coding-intron (ENSMUSG00000030287.15, intron 10 of 56) 28903 ENSMUSG00000107743.1 ENSMUSG00000107743 ENSMUST00000204247 Gm44087 TEC Interval_20533 chr10 118629101 118629332 + 0 NA Intergenic Intergenic -73864 ENSMUSG00000112230.2 ENSMUSG00000112230 ENSMUST00000220034 Ifngas1 lincRNA Interval_59878 chr15 60617691 60617943 + 0 NA Intergenic Intergenic -52526 ENSMUSG00000115504.1 ENSMUSG00000115504 ENSMUST00000226738 Gm48946 lincRNA Interval_115246 chr4 94827040 94827965 + 0 NA intron (ENSMUSG00000006386.15, intron 9 of 22) protein_coding-intron (ENSMUSG00000006386.15, intron 9 of 22) 22659 ENSMUSG00000006386.15 ENSMUSG00000006386 ENSMUST00000131958 Tek protein_coding Interval_124907 chr5 60006946 60007966 + 0 NA Intergenic Intergenic -7895 ENSMUSG00000105158.1 ENSMUSG00000105158 ENSMUST00000197494 Gm42862 TEC Interval_124290 chr5 43661725 43662039 + 0 NA promoter-TSS (ENSMUSG00000039765.15) protein_coding-promoter-TSS (ENSMUSG00000039765.15) -10407 ENSMUSG00000039765.15 ENSMUSG00000039765 ENSMUST00000127355 Cc2d2a protein_coding Interval_63576 chr15 102146880 102147943 + 0 NA intron (ENSMUSG00000023046.6, intron 1 of 3) protein_coding-intron (ENSMUSG00000023046.6, intron 1 of 3) 3049 ENSMUSG00000023046.6 ENSMUSG00000023046 ENSMUST00000023807 Igfbp6 protein_coding Interval_145816 chr7 39538516 39539178 + 0 NA exon (ENSMUSG00000068959.6, exon 4 of 4) protein_coding-exon (ENSMUSG00000068959.6, exon 4 of 4) 6059 ENSMUSG00000104150.2 ENSMUSG00000104150 ENSMUST00000191753 Gm44573 TEC Interval_107820 chr3 115815450 115815856 + 0 NA Intergenic Intergenic -72199 ENSMUSG00000033554.17 ENSMUSG00000033554 ENSMUST00000199970 Dph5 protein_coding Interval_106004 chr3 90556860 90557303 + 0 NA Intergenic Intergenic -3282 ENSMUSG00000094018.2 ENSMUSG00000094018 ENSMUST00000238373 S100a2 protein_coding Interval_135903 chr6 48568923 48570818 + 0 NA exon (ENSMUSG00000073096.11, exon 2 of 2) protein_coding-exon (ENSMUSG00000073096.11, exon 2 of 2) 2917 ENSMUSG00000009281.6 ENSMUSG00000009281 ENSMUST00000204182 Rarres2 protein_coding Interval_36579 chr12 50765405 50766404 + 0 NA intron (ENSMUSG00000112372.1, intron 2 of 8) lincRNA-intron (ENSMUSG00000112372.1, intron 2 of 8) 12807 ENSMUSG00000112372.1 ENSMUSG00000112372 ENSMUST00000220240 Gm48779 lincRNA Interval_347 chr1 4412408 4412688 + 0 NA Intergenic Intergenic -3307 ENSMUSG00000025900.13 ENSMUSG00000025900 ENSMUST00000027032 Rp1 protein_coding Interval_3415 chr1 58144247 58145058 + 0 NA intron (ENSMUSG00000064294.12, intron 10 of 34) protein_coding-intron (ENSMUSG00000064294.12, intron 10 of 34) 10436 ENSMUSG00000089275.1 ENSMUSG00000089275 ENSMUST00000158650 Gm24548 snoRNA Interval_28317 chr11 75168584 75169307 + 0 NA promoter-TSS (ENSMUSG00000043099.4) protein_coding-promoter-TSS (ENSMUSG00000043099.4) -799 ENSMUSG00000043099.4 ENSMUSG00000043099 ENSMUST00000131720 Hic1 protein_coding Interval_154331 chr8 14664454 14664959 + 0 NA intron (ENSMUSG00000047495.15, intron 3 of 14) protein_coding-intron (ENSMUSG00000047495.15, intron 3 of 14) 82721 ENSMUSG00000084945.1 ENSMUSG00000084945 ENSMUST00000155211 C030037F17Rik antisense Interval_15337 chr10 44715132 44717114 + 0 NA intron (ENSMUSG00000111362.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000111362.1, intron 1 of 1) 565 ENSMUSG00000111362.1 ENSMUSG00000111362 ENSMUST00000216787 Gm47389 lincRNA Interval_150622 chr7 112875389 112875897 + 0 NA intron (ENSMUSG00000055320.18, intron 8 of 10) protein_coding-intron (ENSMUSG00000055320.18, intron 10 of 13) -78319 ENSMUSG00000098132.1 ENSMUSG00000098132 ENSMUST00000182858 Rassf10 protein_coding Interval_12972 chr10 8836066 8836473 + 0 NA intron (ENSMUSG00000015305.6, intron 2 of 3) protein_coding-intron (ENSMUSG00000015305.6, intron 2 of 19) -12122 ENSMUSG00000065692.1 ENSMUSG00000065692 ENSMUST00000083758 Gm25410 snoRNA Interval_73754 chr17 43249470 43250178 + 0 NA Intergenic Intergenic -20505 ENSMUSG00000041293.5 ENSMUSG00000041293 ENSMUST00000047399 Adgrf1 protein_coding Interval_101256 chr2 179889964 179890550 + 0 NA intron (ENSMUSG00000000305.12, intron 12 of 15) protein_coding-intron (ENSMUSG00000000305.12, intron 12 of 15) -85736 ENSMUSG00000085704.1 ENSMUSG00000085704 ENSMUST00000150145 4921531C22Rik processed_transcript Interval_89534 chr2 21976483 21977506 + 0 NA Intergenic Intergenic -90832 ENSMUSG00000081467.1 ENSMUSG00000081467 ENSMUST00000119183 Gm13337 processed_pseudogene Interval_76687 chr17 83493387 83494707 + 0 NA Intergenic Intergenic 10459 ENSMUSG00000024248.14 ENSMUSG00000024248 ENSMUST00000234258 Cox7a2l protein_coding Interval_70978 chr17 16967048 16967489 + 0 NA intron (ENSMUSG00000060149.7, intron 1 of 2) lincRNA-intron (ENSMUSG00000060149.7, intron 1 of 2) 15716 ENSMUSG00000060149.7 ENSMUSG00000060149 ENSMUST00000071374 BC002059 lincRNA Interval_135598 chr6 41178696 41179144 + 0 NA exon (ENSMUSG00000076475.2, exon 2 of 2) TR_V_gene-exon (ENSMUSG00000076475.2, exon 2 of 2) 545 ENSMUSG00000076475.2 ENSMUSG00000076475 ENSMUST00000103276 Trbv19 TR_V_gene Interval_58475 chr15 34951662 34952102 + 0 NA intron (ENSMUSG00000022329.15, intron 9 of 10) protein_coding-intron (ENSMUSG00000022329.15, intron 9 of 10) 8355 ENSMUSG00000022329.15 ENSMUSG00000022329 ENSMUST00000138841 Stk3 protein_coding Interval_145282 chr7 31130957 31131257 + 0 NA intron (ENSMUSG00000001248.15, intron 5 of 5) protein_coding-intron (ENSMUSG00000001248.15, intron 18 of 18) 3161 ENSMUSG00000001248.15 ENSMUSG00000001248 ENSMUST00000186723 Gramd1a protein_coding Interval_95606 chr2 112756135 112756347 + 0 NA intron (ENSMUSG00000057378.15, intron 55 of 103) protein_coding-intron (ENSMUSG00000057378.15, intron 55 of 102) -99693 ENSMUSG00000057378.15 ENSMUSG00000057378 ENSMUST00000208135 Ryr3 protein_coding Interval_79358 chr18 31156244 31156753 + 0 NA intron (ENSMUSG00000057455.12, intron 2 of 3) protein_coding-intron (ENSMUSG00000057455.12, intron 2 of 3) 56234 ENSMUSG00000057455.12 ENSMUSG00000057455 ENSMUST00000139924 Rit2 protein_coding Interval_150601 chr7 112743066 112744176 + 0 NA intron (ENSMUSG00000055320.18, intron 1 of 13) protein_coding-intron (ENSMUSG00000055320.18, intron 1 of 13) 29670 ENSMUSG00000106046.1 ENSMUSG00000106046 ENSMUST00000199696 Gm44462 miRNA Interval_166522 chr9 60434187 60434561 + 0 NA intron (ENSMUSG00000032289.15, intron 2 of 16) protein_coding-intron (ENSMUSG00000032289.15, intron 3 of 17) 14511 ENSMUSG00000088550.1 ENSMUSG00000088550 ENSMUST00000157925 Gm22099 snoRNA Interval_413 chr1 5046280 5047451 + 0 NA intron (ENSMUSG00000002459.17, intron 1 of 5) protein_coding-intron (ENSMUSG00000002459.17, intron 1 of 5) -16195 ENSMUSG00000091665.1 ENSMUSG00000091665 ENSMUST00000169520 Gm17101 processed_pseudogene Interval_77940 chr18 5951975 5952285 + 0 NA intron (ENSMUSG00000117508.1, intron 4 of 4) lincRNA-intron (ENSMUSG00000117508.1, intron 4 of 4) 6947 ENSMUSG00000117508.1 ENSMUSG00000117508 ENSMUST00000234953 Gm34804 lincRNA Interval_69925 chr17 3230089 3230946 + 0 NA promoter-TSS (ENSMUSG00000116858.1) lincRNA-promoter-TSS (ENSMUSG00000116858.1) -754 ENSMUSG00000116858.1 ENSMUSG00000116858 ENSMUST00000232042 Gm49797 lincRNA Interval_140694 chr6 120618959 120619217 + 0 NA Intergenic Intergenic -38912 ENSMUSG00000107580.1 ENSMUSG00000107580 ENSMUST00000204159 Gm44124 TEC Interval_17915 chr10 80805146 80808323 + 0 NA intron (ENSMUSG00000035262.5, intron 4 of 4) protein_coding-intron (ENSMUSG00000035262.5, intron 4 of 4) 1491 ENSMUSG00000035262.5 ENSMUSG00000035262 ENSMUST00000036016 Amh protein_coding Interval_114291 chr4 70984339 70984561 + 0 NA Intergenic Intergenic -88223 ENSMUSG00000083549.1 ENSMUSG00000083549 ENSMUST00000119774 Gm11227 processed_pseudogene Interval_21215 chr10 127262288 127263823 + 0 NA promoter-TSS (ENSMUSG00000074657.5) protein_coding-promoter-TSS (ENSMUSG00000074657.5) 40 ENSMUSG00000074657.5 ENSMUSG00000074657 ENSMUST00000218298 Kif5a protein_coding Interval_28780 chr11 78276186 78276635 + 0 NA intron (ENSMUSG00000010277.7, intron 23 of 38) protein_coding-intron (ENSMUSG00000010277.7, intron 23 of 38) 2656 ENSMUSG00000086586.1 ENSMUSG00000086586 ENSMUST00000127017 Gm11192 antisense Interval_48619 chr13 100689851 100690941 + 0 NA exon (ENSMUSG00000048924.14, exon 8 of 12) protein_coding-exon (ENSMUSG00000048924.14, exon 8 of 12) 20679 ENSMUSG00000048924.14 ENSMUSG00000048924 ENSMUST00000057325 Ccdc125 protein_coding Interval_125187 chr5 65184522 65184718 + 0 NA Intergenic Intergenic -15097 ENSMUSG00000037890.13 ENSMUSG00000037890 ENSMUST00000203554 Wdr19 protein_coding Interval_136468 chr6 54715677 54716030 + 0 NA Intergenic Intergenic 22207 ENSMUSG00000108283.1 ENSMUSG00000108283 ENSMUST00000204345 Gm44008 TEC Interval_120553 chr4 149329593 149329962 + 0 NA intron (ENSMUSG00000028960.20, intron 29 of 29) protein_coding-intron (ENSMUSG00000028960.20, intron 26 of 26) -4862 ENSMUSG00000085286.1 ENSMUSG00000085286 ENSMUST00000155845 Ube4bos3 antisense Interval_104571 chr3 68375217 68376063 + 0 NA intron (ENSMUSG00000027777.15, intron 1 of 6) protein_coding-intron (ENSMUSG00000027777.15, intron 1 of 7) -32143 ENSMUSG00000103345.1 ENSMUSG00000103345 ENSMUST00000195366 Gm10723 TEC Interval_62737 chr15 96547254 96549013 + 0 NA Intergenic Intergenic 50231 ENSMUSG00000116160.1 ENSMUSG00000116160 ENSMUST00000229356 Gm41392 lincRNA Interval_169524 chr9 98863609 98865667 + 0 NA promoter-TSS (ENSMUSG00000090470.2) protein_coding-promoter-TSS (ENSMUSG00000090470.2) -129 ENSMUSG00000090470.2 ENSMUSG00000090470 ENSMUST00000167951 Prr23a3 protein_coding Interval_6017 chr1 94008652 94009405 + 0 NA exon (ENSMUSG00000073608.4, exon 8 of 8) protein_coding-exon (ENSMUSG00000073608.4, exon 8 of 8) -11423 ENSMUSG00000034000.15 ENSMUSG00000034000 ENSMUST00000050890 Neu4 protein_coding Interval_92295 chr2 58484359 58484623 + 0 NA intron (ENSMUSG00000026836.15, intron 2 of 10) protein_coding-intron (ENSMUSG00000026836.15, intron 3 of 10) 14375 ENSMUSG00000091922.1 ENSMUSG00000091922 ENSMUST00000167423 Gm17409 TEC Interval_164178 chr9 32221363 32221634 + 0 NA intron (ENSMUSG00000041444.14, intron 2 of 13) protein_coding-intron (ENSMUSG00000041444.14, intron 10 of 21) -3094 ENSMUSG00000041444.14 ENSMUSG00000041444 ENSMUST00000174730 Arhgap32 protein_coding Interval_125997 chr5 76735583 76735997 + 0 NA intron (ENSMUSG00000036377.19, intron 1 of 11) protein_coding-intron (ENSMUSG00000036377.19, intron 1 of 4) 6723 ENSMUSG00000083874.1 ENSMUSG00000083874 ENSMUST00000121248 Gm7494 processed_pseudogene Interval_147518 chr7 67972415 67973842 + 0 NA intron (ENSMUSG00000005533.10, intron 1 of 20) protein_coding-intron (ENSMUSG00000005533.10, intron 1 of 20) -86543 ENSMUSG00000109152.1 ENSMUSG00000109152 ENSMUST00000208544 Gm44666 processed_pseudogene Interval_92980 chr2 69148921 69149248 + 0 NA intron (ENSMUSG00000034738.8, intron 2 of 15) protein_coding-intron (ENSMUSG00000034738.8, intron 2 of 15) -30221 ENSMUSG00000034738.8 ENSMUSG00000034738 ENSMUST00000141276 Nostrin protein_coding Interval_134479 chr6 29031292 29031731 + 0 NA Intergenic Intergenic 8892 ENSMUSG00000065469.1 ENSMUSG00000065469 ENSMUST00000083535 Mir129-1 miRNA Interval_35329 chr12 20678518 20678811 + 0 NA Intergenic Intergenic 12323 ENSMUSG00000116635.1 ENSMUSG00000116635 ENSMUST00000232444 Gm49699 transcribed_unprocessed_pseudogene Interval_56993 chr15 3603389 3603773 + 0 NA promoter-TSS (ENSMUSG00000080595.1) snRNA-promoter-TSS (ENSMUSG00000080595.1) -184 ENSMUSG00000080595.1 ENSMUSG00000080595 ENSMUST00000116945 Gm22031 snRNA Interval_48039 chr13 95481267 95482058 + 0 NA Intergenic Intergenic -2941 ENSMUSG00000021679.4 ENSMUSG00000021679 ENSMUST00000022186 S100z protein_coding Interval_121014 chr4 152214041 152214675 + 0 NA intron (ENSMUSG00000028937.14, intron 2 of 8) protein_coding-intron (ENSMUSG00000028937.14, intron 2 of 8) 10432 ENSMUSG00000085724.1 ENSMUSG00000085724 ENSMUST00000127752 Gm13096 sense_intronic Interval_73933 chr17 45555546 45556267 + 0 NA exon (ENSMUSG00000023947.8, exon 1 of 6) protein_coding-exon (ENSMUSG00000023947.8, exon 1 of 6) 195 ENSMUSG00000023947.8 ENSMUSG00000023947 ENSMUST00000233379 Nfkbie protein_coding Interval_95279 chr2 105523271 105523910 + 0 NA Intergenic Intergenic 13892 ENSMUSG00000081701.1 ENSMUSG00000081701 ENSMUST00000117578 Gm13890 transcribed_processed_pseudogene Interval_108645 chr3 129744717 129745925 + 0 NA promoter-TSS (ENSMUSG00000105596.1) antisense-promoter-TSS (ENSMUSG00000105596.1) -19 ENSMUSG00000105596.1 ENSMUSG00000105596 ENSMUST00000197038 Gm42650 antisense Interval_126105 chr5 77409082 77410102 + 0 NA Intergenic Intergenic -1552 ENSMUSG00000036256.13 ENSMUSG00000036256 ENSMUST00000163898 Igfbp7 protein_coding Interval_27075 chr11 62699109 62700355 + 0 NA TTS (ENSMUSG00000005267.13) protein_coding-TTS (ENSMUSG00000005267.13) 2514 ENSMUSG00000081852.1 ENSMUSG00000081852 ENSMUST00000119536 Gm12281 processed_pseudogene Interval_104986 chr3 79515822 79516981 + 0 NA intron (ENSMUSG00000061175.12, intron 2 of 12) protein_coding-intron (ENSMUSG00000061175.12, intron 2 of 16) 15475 ENSMUSG00000061175.12 ENSMUSG00000061175 ENSMUST00000139171 Fnip2 protein_coding Interval_137892 chr6 83171000 83172423 + 0 NA exon (ENSMUSG00000085782.2, exon 2 of 3) antisense-exon (ENSMUSG00000085782.2, exon 2 of 3) 1044 ENSMUSG00000085782.2 ENSMUSG00000085782 ENSMUST00000145420 Gm15624 antisense Interval_15059 chr10 42269356 42269760 + 0 NA intron (ENSMUSG00000048756.11, intron 2 of 2) protein_coding-intron (ENSMUSG00000048756.11, intron 2 of 3) -11192 ENSMUSG00000048756.11 ENSMUSG00000048756 ENSMUST00000105501 Foxo3 protein_coding Interval_98957 chr2 156323591 156325607 + 0 NA intron (ENSMUSG00000038085.13, intron 2 of 4) protein_coding-intron (ENSMUSG00000038085.13, intron 2 of 12) 2047 ENSMUSG00000076231.1 ENSMUSG00000076231 ENSMUST00000102276 Gm22759 miRNA Interval_43486 chr13 31796090 31796350 + 0 NA Intergenic Intergenic -1319 ENSMUSG00000086144.2 ENSMUSG00000086144 ENSMUST00000154678 Gm11379 antisense Interval_132408 chr5 144758381 144759030 + 0 NA intron (ENSMUSG00000043388.8, intron 1 of 2) protein_coding-intron (ENSMUSG00000043388.8, intron 1 of 7) 3113 ENSMUSG00000043388.8 ENSMUSG00000043388 ENSMUST00000197254 Tmem130 protein_coding Interval_159040 chr8 89012175 89013148 + 0 NA Intergenic Intergenic -12074 ENSMUSG00000099078.1 ENSMUSG00000099078 ENSMUST00000183771 Mir8110 miRNA Interval_107223 chr3 104735507 104736986 + 0 NA Intergenic Intergenic 16919 ENSMUSG00000089999.1 ENSMUSG00000089999 ENSMUST00000160676 Gm6485 transcribed_processed_pseudogene Interval_9403 chr1 156845835 156846320 + 0 NA TTS (ENSMUSG00000033544.6) protein_coding-TTS (ENSMUSG00000033544.6) 7135 ENSMUSG00000033544.6 ENSMUSG00000033544 ENSMUST00000111720 Angptl1 protein_coding Interval_110205 chr3 154267068 154267414 + 0 NA intron (ENSMUSG00000028360.10, intron 21 of 21) protein_coding-intron (ENSMUSG00000028360.10, intron 21 of 21) -17741 ENSMUSG00000106500.1 ENSMUSG00000106500 ENSMUST00000200319 Gm42540 TEC Interval_162679 chr9 7772708 7773503 + 0 NA intron (ENSMUSG00000050912.15, intron 2 of 4) protein_coding-intron (ENSMUSG00000050912.15, intron 2 of 4) 8940 ENSMUSG00000050912.15 ENSMUSG00000050912 ENSMUST00000154371 Tmem123 protein_coding Interval_38082 chr12 75554446 75555240 + 0 NA intron (ENSMUSG00000021051.10, intron 2 of 12) protein_coding-intron (ENSMUSG00000021051.10, intron 2 of 13) -25022 ENSMUSG00000112459.1 ENSMUSG00000112459 ENSMUST00000219909 Gm47689 antisense Interval_78381 chr18 12333407 12334565 + 0 NA exon (ENSMUSG00000024421.16, exon 1 of 75) protein_coding-exon (ENSMUSG00000024421.16, exon 1 of 75) -31813 ENSMUSG00000099663.1 ENSMUSG00000099663 ENSMUST00000189120 Gm29201 processed_pseudogene Interval_14076 chr10 26606671 26607582 + 0 NA Intergenic Intergenic -3621 ENSMUSG00000111882.2 ENSMUSG00000111882 ENSMUST00000218590 Gm48864 unitary_pseudogene Interval_61972 chr15 85580276 85583769 + 0 NA promoter-TSS (ENSMUSG00000022382.15) protein_coding-promoter-TSS (ENSMUSG00000022382.15) 1770 ENSMUSG00000097209.2 ENSMUSG00000097209 ENSMUST00000180441 AU022754 antisense Interval_80378 chr18 40419551 40420195 + 0 NA intron (ENSMUSG00000051401.7, intron 1 of 2) protein_coding-intron (ENSMUSG00000051401.7, intron 1 of 1) 19864 ENSMUSG00000118315.1 ENSMUSG00000118315 ENSMUST00000237648 Gm31019 antisense Interval_169268 chr9 95998772 95999074 + 0 NA intron (ENSMUSG00000032410.13, intron 17 of 23) protein_coding-intron (ENSMUSG00000032410.13, intron 20 of 41) 20482 ENSMUSG00000101867.1 ENSMUSG00000101867 ENSMUST00000186632 C78334 antisense Interval_125451 chr5 67244857 67245480 + 0 NA Intergenic Intergenic -15586 ENSMUSG00000037720.16 ENSMUSG00000037720 ENSMUST00000163028 Tmem33 protein_coding Interval_110865 chr4 9147837 9148271 + 0 NA Intergenic Intergenic -61949 ENSMUSG00000075958.1 ENSMUSG00000075958 ENSMUST00000082782 Gm23423 snRNA Interval_11868 chr1 186580126 186580324 + 0 NA Intergenic Intergenic -21544 ENSMUSG00000103690.1 ENSMUSG00000103690 ENSMUST00000195454 A730004F24Rik lincRNA Interval_3019 chr1 52252632 52253119 + 0 NA Intergenic Intergenic 36220 ENSMUSG00000099648.1 ENSMUSG00000099648 ENSMUST00000185256 Gm5975 processed_pseudogene Interval_140463 chr6 118413206 118413544 + 0 NA TTS (ENSMUSG00000030138.8) protein_coding-TTS (ENSMUSG00000030138.8) 6029 ENSMUSG00000030138.8 ENSMUSG00000030138 ENSMUST00000203444 Bms1 protein_coding Interval_154030 chr8 12050610 12051464 + 0 NA Intergenic Intergenic 102698 ENSMUSG00000109995.1 ENSMUSG00000109995 ENSMUST00000209977 B020031H02Rik lincRNA Interval_171963 chr9 122983309 122983638 + 0 NA intron (ENSMUSG00000036768.6, intron 1 of 7) protein_coding-intron (ENSMUSG00000036768.6, intron 10 of 34) -9654 ENSMUSG00000111617.1 ENSMUSG00000111617 ENSMUST00000217243 Gm47148 TEC Interval_55183 chr14 79112198 79112473 + 0 NA intron (ENSMUSG00000058997.8, intron 37 of 44) protein_coding-intron (ENSMUSG00000058997.8, intron 37 of 44) -5934 ENSMUSG00000115637.1 ENSMUSG00000115637 ENSMUST00000227710 Gm30970 processed_pseudogene Interval_94210 chr2 85129970 85130950 + 0 NA Intergenic Intergenic -6932 ENSMUSG00000044338.9 ENSMUSG00000044338 ENSMUST00000184728 Aplnr protein_coding Interval_98831 chr2 155385169 155387299 + 0 NA TTS (ENSMUSG00000038375.15) protein_coding-TTS (ENSMUSG00000038375.15) 4394 ENSMUSG00000038375.15 ENSMUSG00000038375 ENSMUST00000134218 Trp53inp2 protein_coding Interval_116605 chr4 116008192 116008595 + 0 NA intron (ENSMUSG00000034171.13, intron 1 of 11) protein_coding-intron (ENSMUSG00000034171.13, intron 1 of 14) -8456 ENSMUSG00000034171.13 ENSMUSG00000034171 ENSMUST00000150614 Faah protein_coding Interval_13779 chr10 22007732 22008011 + 0 NA Intergenic Intergenic 29199 ENSMUSG00000019970.15 ENSMUSG00000019970 ENSMUST00000135195 Sgk1 protein_coding Interval_65430 chr16 22293646 22293932 + 0 NA Intergenic Intergenic -1238 ENSMUSG00000082241.4 ENSMUSG00000082241 ENSMUST00000120931 Gng5-ps processed_pseudogene Interval_153099 chr7 141350590 141351470 + 0 NA intron (ENSMUSG00000025504.14, intron 5 of 6) protein_coding-intron (ENSMUSG00000025504.14, intron 4 of 20) 12050 ENSMUSG00000025504.14 ENSMUSG00000025504 ENSMUST00000155729 Eps8l2 protein_coding Interval_56303 chr14 116925114 116927653 + 0 NA intron (ENSMUSG00000058571.11, intron 1 of 9) protein_coding-intron (ENSMUSG00000058571.11, intron 1 of 8) 852 ENSMUSG00000058571.11 ENSMUSG00000058571 ENSMUST00000078849 Gpc6 protein_coding Interval_19205 chr10 95487465 95488112 + 0 NA intron (ENSMUSG00000062981.5, intron 4 of 4) protein_coding-intron (ENSMUSG00000062981.5, intron 5 of 5) -9671 ENSMUSG00000112450.1 ENSMUSG00000112450 ENSMUST00000219947 Gm3619 processed_pseudogene Interval_143779 chr7 16256816 16257041 + 0 NA intron (ENSMUSG00000049130.6, intron 2 of 2) protein_coding-intron (ENSMUSG00000049130.6, intron 2 of 2) 2612 ENSMUSG00000049130.6 ENSMUSG00000049130 ENSMUST00000209442 C5ar1 protein_coding Interval_109063 chr3 135531597 135532013 + 0 NA intron (ENSMUSG00000028164.15, intron 7 of 12) protein_coding-intron (ENSMUSG00000028164.15, intron 7 of 16) -5273 ENSMUSG00000083610.1 ENSMUSG00000083610 ENSMUST00000121735 Oaz2-ps processed_pseudogene Interval_151492 chr7 123057659 123058000 + 0 NA intron (ENSMUSG00000109814.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000109814.1, intron 1 of 3) 26414 ENSMUSG00000109814.1 ENSMUSG00000109814 ENSMUST00000209402 Gm45847 lincRNA Interval_85122 chr19 23022218 23022475 + 0 NA intron (ENSMUSG00000097930.2, intron 1 of 1) lincRNA-intron (ENSMUSG00000097930.2, intron 1 of 1) -39108 ENSMUSG00000118155.1 ENSMUSG00000118155 ENSMUST00000235686 Gm50136 lincRNA Interval_22878 chr11 17018830 17020017 + 0 NA exon (ENSMUSG00000083752.1, exon 2 of 3) processed_pseudogene-exon (ENSMUSG00000083752.1, exon 2 of 3) 1571 ENSMUSG00000083752.1 ENSMUSG00000083752 ENSMUST00000120164 Gm12014 processed_pseudogene Interval_67518 chr16 50167361 50168062 + 0 NA Intergenic Intergenic 56638 ENSMUSG00000098028.1 ENSMUSG00000098028 ENSMUST00000182962 Gm8824 processed_pseudogene Interval_23248 chr11 20891861 20892216 + 0 NA Intergenic Intergenic -44157 ENSMUSG00000064671.1 ENSMUSG00000064671 ENSMUST00000082737 Gm22807 snoRNA Interval_130467 chr5 127934300 127934487 + 0 NA intron (ENSMUSG00000034310.8, intron 4 of 8) protein_coding-intron (ENSMUSG00000034310.8, intron 4 of 8) 55862 ENSMUSG00000085328.2 ENSMUSG00000085328 ENSMUST00000164420 Gm17131 unprocessed_pseudogene Interval_83494 chr18 87535669 87535964 + 0 NA Intergenic Intergenic -40392 ENSMUSG00000117683.1 ENSMUSG00000117683 ENSMUST00000237348 Gm50389 processed_pseudogene Interval_58659 chr15 36876284 36876478 + 0 NA intron (ENSMUSG00000072618.2, intron 1 of 1) lincRNA-intron (ENSMUSG00000072618.2, intron 1 of 1) 3435 ENSMUSG00000072618.2 ENSMUSG00000072618 ENSMUST00000100713 Gm10384 lincRNA Interval_113997 chr4 62360101 62361220 + 0 NA promoter-TSS (ENSMUSG00000066150.12) protein_coding-promoter-TSS (ENSMUSG00000066150.12) -22165 ENSMUSG00000066151.12 ENSMUSG00000066151 ENSMUST00000131977 Fkbp15 protein_coding Interval_41989 chr13 6021412 6021777 + 0 NA Intergenic Intergenic 7410 ENSMUSG00000113054.1 ENSMUSG00000113054 ENSMUST00000222688 Gm47514 lincRNA Interval_66249 chr16 32635017 32638894 + 0 NA Intergenic Intergenic 16566 ENSMUSG00000022797.16 ENSMUSG00000022797 ENSMUST00000128285 Tfrc protein_coding Interval_146461 chr7 46084657 46087084 + 0 NA Intergenic Intergenic 7091 ENSMUSG00000109882.1 ENSMUSG00000109882 ENSMUST00000210053 Gm18706 processed_pseudogene Interval_59235 chr15 49304649 49305339 + 0 NA Intergenic Intergenic 110657 ENSMUSG00000115775.1 ENSMUSG00000115775 ENSMUST00000228245 Gm41318 lincRNA Interval_9735 chr1 161451552 161452214 + 0 NA Intergenic Intergenic -42772 ENSMUSG00000066755.2 ENSMUSG00000066755 ENSMUST00000086084 Tnfsf18 protein_coding Interval_166568 chr9 60971522 60973015 + 0 NA Intergenic Intergenic -44801 ENSMUSG00000111290.1 ENSMUSG00000111290 ENSMUST00000216854 Gm5122 lincRNA Interval_797 chr1 11423912 11424297 + 0 NA intron (ENSMUSG00000057715.13, intron 1 of 1) protein_coding-intron (ENSMUSG00000057715.13, intron 1 of 13) 7186 ENSMUSG00000103825.1 ENSMUSG00000103825 ENSMUST00000194502 Gm38178 TEC Interval_30816 chr11 96673583 96674284 + 0 NA intron (ENSMUSG00000057058.16, intron 4 of 7) protein_coding-intron (ENSMUSG00000057058.16, intron 4 of 11) -92869 ENSMUSG00000085242.1 ENSMUSG00000085242 ENSMUST00000124865 Gm11537 antisense Interval_3413 chr1 58130243 58131619 + 0 NA intron (ENSMUSG00000064294.12, intron 7 of 7) protein_coding-intron (ENSMUSG00000064294.12, intron 7 of 34) 17745 ENSMUSG00000064294.12 ENSMUSG00000064294 ENSMUST00000160815 Aox3 protein_coding Interval_111907 chr4 32464240 32464459 + 0 NA intron (ENSMUSG00000040270.16, intron 1 of 4) protein_coding-intron (ENSMUSG00000040270.16, intron 3 of 7) 46914 ENSMUSG00000040270.16 ENSMUSG00000040270 ENSMUST00000125263 Bach2 protein_coding Interval_68054 chr16 64770300 64771528 + 0 NA exon (ENSMUSG00000059920.9, exon 1 of 3) protein_coding-exon (ENSMUSG00000059920.9, exon 1 of 3) -4258 ENSMUSG00000059920.9 ENSMUSG00000059920 ENSMUST00000076991 4930453N24Rik protein_coding Interval_88379 chr2 4573556 4575934 + 0 NA intron (ENSMUSG00000026657.17, intron 15 of 24) protein_coding-intron (ENSMUSG00000026657.17, intron 14 of 23) 12542 ENSMUSG00000086018.7 ENSMUSG00000086018 ENSMUST00000137801 Gm13179 antisense Interval_133035 chr5 149434617 149434853 + 0 NA Intergenic Intergenic -4971 ENSMUSG00000029660.10 ENSMUSG00000029660 ENSMUST00000201610 Tex26 protein_coding Interval_18613 chr10 88481755 88483626 + 0 NA intron (ENSMUSG00000060002.14, intron 3 of 8) protein_coding-intron (ENSMUSG00000060002.14, intron 3 of 7) -6250 ENSMUSG00000060002.14 ENSMUSG00000060002 ENSMUST00000073783 Chpt1 protein_coding Interval_4444 chr1 74241348 74241632 + 0 NA intron (ENSMUSG00000006304.14, intron 2 of 10) protein_coding-intron (ENSMUSG00000006304.14, intron 1 of 9) 5406 ENSMUSG00000006304.14 ENSMUSG00000006304 ENSMUST00000113819 Arpc2 protein_coding Interval_73104 chr17 34823906 34824655 + 0 NA promoter-TSS (ENSMUSG00000015451.16) processed_transcript-promoter-TSS (ENSMUSG00000015451.16) 2171 ENSMUSG00000061207.11 ENSMUSG00000061207 ENSMUST00000161238 Stk19 protein_coding Interval_73144 chr17 35064930 35065889 + 0 NA promoter-TSS (ENSMUSG00000092586.8) protein_coding-promoter-TSS (ENSMUSG00000092586.8) 761 ENSMUSG00000073414.8 ENSMUSG00000073414 ENSMUST00000174190 Mpig6b protein_coding Interval_27008 chr11 62342828 62343336 + 0 NA TTS (ENSMUSG00000018501.17) protein_coding-TTS (ENSMUSG00000018501.17) 11661 ENSMUSG00000081944.1 ENSMUSG00000081944 ENSMUST00000121709 Gm12276 processed_pseudogene Interval_110638 chr4 5626500 5626732 + 0 NA Intergenic Intergenic -5712 ENSMUSG00000086066.7 ENSMUSG00000086066 ENSMUST00000130895 4930423M02Rik lincRNA Interval_120379 chr4 148212207 148212758 + 0 NA Intergenic Intergenic 48269 ENSMUSG00000041544.11 ENSMUSG00000041544 ENSMUST00000129734 Disp3 protein_coding Interval_70470 chr17 10431513 10433826 + 0 NA intron (ENSMUSG00000037196.6, intron 4 of 4) protein_coding-intron (ENSMUSG00000037196.6, intron 4 of 4) -23547 ENSMUSG00000089633.2 ENSMUSG00000089633 ENSMUST00000160738 A230009B12Rik antisense Interval_7419 chr1 131153063 131153690 + 0 NA exon (ENSMUSG00000026427.16, exon 1 of 13) protein_coding-exon (ENSMUSG00000026427.16, exon 1 of 13) -13003 ENSMUSG00000026427.16 ENSMUSG00000026427 ENSMUST00000153651 Eif2d protein_coding Interval_159000 chr8 88621181 88621680 + 0 NA Intergenic Intergenic 14671 ENSMUSG00000031662.8 ENSMUSG00000031662 ENSMUST00000209806 Snx20 protein_coding Interval_134619 chr6 30000989 30001436 + 0 NA Intergenic Intergenic 12824 ENSMUSG00000095989.1 ENSMUSG00000095989 ENSMUST00000178068 Gm23049 miRNA Interval_21604 chr10 130520713 130520956 + 0 NA Intergenic Intergenic 15127 ENSMUSG00000112195.1 ENSMUSG00000112195 ENSMUST00000218754 Gm35405 processed_pseudogene Interval_165834 chr9 53666628 53667840 + 0 NA promoter-TSS (ENSMUSG00000032030.16) protein_coding-promoter-TSS (ENSMUSG00000032030.16) -12 ENSMUSG00000086914.1 ENSMUSG00000086914 ENSMUST00000146938 Gm16124 antisense Interval_141230 chr6 125998522 125998997 + 0 NA intron (ENSMUSG00000038115.16, intron 21 of 25) protein_coding-intron (ENSMUSG00000038115.16, intron 12 of 16) 114344 ENSMUSG00000088959.1 ENSMUSG00000088959 ENSMUST00000158334 Gm24947 snRNA Interval_172280 chrX 12293173 12294219 + 0 NA Intergenic Intergenic 61300 ENSMUSG00000087591.7 ENSMUSG00000087591 ENSMUST00000137281 Gm14635 lincRNA Interval_62408 chr15 92050959 92052057 + 0 NA intron (ENSMUSG00000055022.14, intron 1 of 23) protein_coding-intron (ENSMUSG00000055022.14, intron 1 of 8) 343 ENSMUSG00000055022.14 ENSMUSG00000055022 ENSMUST00000068378 Cntn1 protein_coding Interval_75007 chr17 59864506 59865016 + 0 NA intron (ENSMUSG00000117191.1, intron 1 of 5) lincRNA-intron (ENSMUSG00000117191.1, intron 1 of 5) 9544 ENSMUSG00000117191.1 ENSMUSG00000117191 ENSMUST00000233598 Gm49853 lincRNA Interval_107673 chr3 110056973 110058226 + 0 NA intron (ENSMUSG00000059857.15, intron 1 of 4) protein_coding-intron (ENSMUSG00000059857.15, intron 1 of 6) 150215 ENSMUSG00000082624.1 ENSMUSG00000082624 ENSMUST00000121025 Gm12535 processed_pseudogene Interval_111674 chr4 25692764 25692997 + 0 NA intron (ENSMUSG00000055373.8, intron 1 of 1) protein_coding-intron (ENSMUSG00000055373.8, intron 2 of 2) 106975 ENSMUSG00000055373.8 ENSMUSG00000055373 ENSMUST00000149875 Fut9 protein_coding Interval_68464 chr16 77292306 77292635 + 0 NA intron (ENSMUSG00000090386.10, intron 2 of 3) processed_transcript-intron (ENSMUSG00000090386.10, intron 2 of 6) 13090 ENSMUSG00000102289.1 ENSMUSG00000102289 ENSMUST00000194532 Gm31258 TEC Interval_40483 chr12 105119925 105120346 + 0 NA Intergenic Intergenic -15061 ENSMUSG00000113051.1 ENSMUSG00000113051 ENSMUST00000222354 Gm47672 processed_pseudogene Interval_76308 chr17 78942322 78943995 + 0 NA TTS (ENSMUSG00000024082.5) protein_coding-TTS (ENSMUSG00000024082.5) -1869 ENSMUSG00000024082.5 ENSMUSG00000024082 ENSMUST00000232821 Ndufaf7 protein_coding Interval_60312 chr15 72767172 72767621 + 0 NA intron (ENSMUSG00000047921.17, intron 16 of 21) protein_coding-intron (ENSMUSG00000047921.17, intron 16 of 21) 41992 ENSMUSG00000116314.1 ENSMUSG00000116314 ENSMUST00000229330 Gm49459 processed_pseudogene Interval_134189 chr6 22466036 22466341 + 0 NA Intergenic Intergenic -122275 ENSMUSG00000029672.16 ENSMUSG00000029672 ENSMUST00000168965 Fam3c protein_coding Interval_124204 chr5 40675721 40676052 + 0 NA Intergenic Intergenic -269957 ENSMUSG00000089393.1 ENSMUSG00000089393 ENSMUST00000158768 Gm23022 snRNA Interval_134023 chr6 17806605 17807111 + 0 NA intron (ENSMUSG00000029534.17, intron 1 of 15) protein_coding-intron (ENSMUSG00000029534.17, intron 1 of 14) 28327 ENSMUSG00000097700.1 ENSMUSG00000097700 ENSMUST00000181312 Gm26738 antisense Interval_51598 chr14 30590995 30591731 + 0 NA Intergenic Intergenic 17932 ENSMUSG00000021948.17 ENSMUSG00000021948 ENSMUST00000227078 Prkcd protein_coding Interval_104166 chr3 59343741 59344981 + 0 NA promoter-TSS (ENSMUSG00000036334.12) protein_coding-promoter-TSS (ENSMUSG00000036334.12) 90 ENSMUSG00000103668.1 ENSMUSG00000103668 ENSMUST00000192574 Gm38186 antisense Interval_52509 chr14 47194257 47194744 + 0 NA Intergenic Intergenic -5370 ENSMUSG00000115566.1 ENSMUSG00000115566 ENSMUST00000228847 Gm49136 processed_pseudogene Interval_44929 chr13 50136990 50137294 + 0 NA promoter-TSS (ENSMUSG00000113227.1) lincRNA-promoter-TSS (ENSMUSG00000113227.1) 73 ENSMUSG00000113227.1 ENSMUSG00000113227 ENSMUST00000222134 4933433N18Rik lincRNA Interval_58994 chr15 41476525 41477589 + 0 NA intron (ENSMUSG00000022307.16, intron 1 of 15) protein_coding-intron (ENSMUSG00000022307.16, intron 1 of 15) -233899 ENSMUSG00000116178.1 ENSMUSG00000116178 ENSMUST00000229823 Gm49529 processed_pseudogene Interval_18225 chr10 83914710 83915189 + 0 NA Intergenic Intergenic 13097 ENSMUSG00000112133.1 ENSMUSG00000112133 ENSMUST00000217741 Gm47247 processed_pseudogene Interval_35071 chr12 17049925 17050884 + 0 NA Intergenic Intergenic -15009 ENSMUSG00000113447.1 ENSMUSG00000113447 ENSMUST00000221508 Gm48538 lincRNA Interval_64758 chr16 15352135 15352805 + 0 NA Intergenic Intergenic 35012 ENSMUSG00000094472.1 ENSMUSG00000094472 ENSMUST00000178312 Gm21897 protein_coding Interval_127242 chr5 101826394 101827390 + 0 NA Intergenic Intergenic -10560 ENSMUSG00000092354.7 ENSMUSG00000092354 ENSMUST00000174312 Gm20548 antisense Interval_158414 chr8 83590594 83591507 + 0 NA intron (ENSMUSG00000031708.17, intron 1 of 4) protein_coding-intron (ENSMUSG00000031708.17, intron 1 of 12) -5525 ENSMUSG00000110471.1 ENSMUSG00000110471 ENSMUST00000212714 Gm45823 sense_intronic Interval_107577 chr3 108605102 108605864 + 0 NA intron (ENSMUSG00000040389.15, intron 1 of 3) protein_coding-intron (ENSMUSG00000040389.15, intron 1 of 14) -2668 ENSMUSG00000081499.1 ENSMUSG00000081499 ENSMUST00000122082 Gm12517 processed_pseudogene Interval_1198 chr1 16881565 16881948 + 0 NA Intergenic Intergenic -16429 ENSMUSG00000101640.1 ENSMUSG00000101640 ENSMUST00000186604 Gm28376 antisense Interval_48694 chr13 101540302 101540673 + 0 NA Intergenic Intergenic -4719 ENSMUSG00000114400.1 ENSMUSG00000114400 ENSMUST00000224257 Gm47533 lincRNA Interval_105027 chr3 79883172 79884948 + 0 NA promoter-TSS (ENSMUSG00000027955.16) protein_coding-promoter-TSS (ENSMUSG00000027955.16) -1996 ENSMUSG00000027955.16 ENSMUSG00000027955 ENSMUST00000193204 Gask1b protein_coding Interval_77262 chr17 87639312 87640545 + 0 NA TTS (ENSMUSG00000045394.9) protein_coding-TTS (ENSMUSG00000045394.9) 3949 ENSMUSG00000045394.9 ENSMUSG00000045394 ENSMUST00000234623 Epcam protein_coding Interval_142750 chr6 145322375 145322866 + 0 NA Intergenic Intergenic -6012 ENSMUSG00000083962.1 ENSMUSG00000083962 ENSMUST00000118804 Gm15707 processed_pseudogene Interval_26112 chr11 54387443 54388918 + 0 NA intron (ENSMUSG00000020332.7, intron 3 of 12) protein_coding-intron (ENSMUSG00000020332.7, intron 4 of 13) -12912 ENSMUSG00000078151.3 ENSMUSG00000078151 ENSMUST00000144172 Gm12226 processed_pseudogene Interval_109469 chr3 142714124 142714424 + 0 NA intron (ENSMUSG00000040213.13, intron 2 of 13) protein_coding-intron (ENSMUSG00000040213.13, intron 2 of 13) 13188 ENSMUSG00000040213.13 ENSMUSG00000040213 ENSMUST00000128096 Kyat3 protein_coding Interval_19818 chr10 109626093 109626342 + 0 NA Intergenic Intergenic -22562 ENSMUSG00000112260.1 ENSMUSG00000112260 ENSMUST00000219153 3110043J17Rik TEC Interval_61821 chr15 84406474 84406959 + 0 NA exon (ENSMUSG00000062760.11, exon 4 of 5) protein_coding-exon (ENSMUSG00000062760.11, exon 4 of 5) 40381 ENSMUSG00000062760.11 ENSMUSG00000062760 ENSMUST00000186527 Shisal1 protein_coding Interval_14501 chr10 34395386 34395883 + 0 NA exon (ENSMUSG00000039462.4, exon 3 of 3) protein_coding-exon (ENSMUSG00000039462.4, exon 3 of 3) 5653 ENSMUSG00000039462.4 ENSMUSG00000039462 ENSMUST00000105511 Col10a1 protein_coding Interval_121783 chr5 8147627 8148130 + 0 NA intron (ENSMUSG00000040537.17, intron 9 of 29) protein_coding-intron (ENSMUSG00000040537.17, intron 9 of 28) -31273 ENSMUSG00000040537.17 ENSMUSG00000040537 ENSMUST00000143929 Adam22 protein_coding Interval_115166 chr4 92869924 92870234 + 0 NA Intergenic Intergenic -3497 ENSMUSG00000088914.1 ENSMUSG00000088914 ENSMUST00000158289 Gm22605 snRNA Interval_123643 chr5 34220714 34221358 + 0 NA promoter-TSS (ENSMUSG00000106888.1) antisense-promoter-TSS (ENSMUSG00000106888.1) -126 ENSMUSG00000106888.1 ENSMUSG00000106888 ENSMUST00000201477 Gm42848 antisense Interval_33551 chr11 117168476 117169452 + 0 NA Intergenic Intergenic 13895 ENSMUSG00000020823.16 ENSMUSG00000020823 ENSMUST00000153437 Sec14l1 protein_coding Interval_85735 chr19 30185041 30186146 + 0 NA Intergenic Intergenic 24973 ENSMUSG00000058607.4 ENSMUSG00000058607 ENSMUST00000080982 Rpl31-ps20 processed_pseudogene Interval_172587 chrX 37115573 37117113 + 0 NA Intergenic Intergenic -6021 ENSMUSG00000036572.16 ENSMUSG00000036572 ENSMUST00000133481 Upf3b protein_coding Interval_50422 chr14 12875063 12876162 + 0 NA Intergenic Intergenic 8059 ENSMUSG00000021741.4 ENSMUSG00000021741 ENSMUST00000022260 Gm5457 processed_pseudogene Interval_104546 chr3 67582276 67583657 + 0 NA exon (ENSMUSG00000027775.9, exon 1 of 16) protein_coding-exon (ENSMUSG00000027775.9, exon 1 of 16) -1780 ENSMUSG00000027775.9 ENSMUSG00000027775 ENSMUST00000192776 Mfsd1 protein_coding Interval_70231 chr17 7074663 7074943 + 0 NA intron (ENSMUSG00000094083.2, intron 2 of 3) protein_coding-intron (ENSMUSG00000094083.2, intron 2 of 3) -32238 ENSMUSG00000094889.1 ENSMUSG00000094889 ENSMUST00000158815 Gm25119 scaRNA Interval_51228 chr14 25342105 25343037 + 0 NA intron (ENSMUSG00000097601.2, intron 1 of 3) lincRNA-intron (ENSMUSG00000097601.2, intron 1 of 3) 37038 ENSMUSG00000097601.2 ENSMUSG00000097601 ENSMUST00000181582 Gm26660 lincRNA Interval_16893 chr10 69570524 69571387 + 0 NA intron (ENSMUSG00000069601.14, intron 1 of 17) protein_coding-intron (ENSMUSG00000069601.14, intron 1 of 16) -4594 ENSMUSG00000112729.1 ENSMUSG00000112729 ENSMUST00000220152 Gm46231 processed_pseudogene Interval_40713 chr12 107858620 107859586 + 0 NA Intergenic Intergenic -75062 ENSMUSG00000086975.1 ENSMUSG00000086975 ENSMUST00000134448 Gm15208 lincRNA Interval_1622 chr1 30301752 30302177 + 0 NA Intergenic Intergenic 31433 ENSMUSG00000098883.1 ENSMUSG00000098883 ENSMUST00000184585 Gm27430 miRNA Interval_27633 chr11 69171350 69172369 + 0 NA Intergenic Intergenic 14870 ENSMUSG00000032807.5 ENSMUSG00000032807 ENSMUST00000036424 Alox12b protein_coding Interval_95436 chr2 109313918 109314283 + 0 NA intron (ENSMUSG00000027115.14, intron 12 of 16) protein_coding-intron (ENSMUSG00000027115.14, intron 12 of 16) 22077 ENSMUSG00000027115.14 ENSMUSG00000027115 ENSMUST00000162515 Kif18a protein_coding Interval_30983 chr11 97574226 97576106 + 0 NA promoter-TSS (ENSMUSG00000038453.17) protein_coding-promoter-TSS (ENSMUSG00000038453.17) 60 ENSMUSG00000038453.17 ENSMUSG00000038453 ENSMUST00000145845 Srcin1 protein_coding Interval_92145 chr2 54101505 54101999 + 0 NA Intergenic Intergenic 1322 ENSMUSG00000064596.1 ENSMUSG00000064596 ENSMUST00000082662 Gm22298 snoRNA Interval_93910 chr2 78984090 78984447 + 0 NA intron (ENSMUSG00000102286.1, intron 1 of 4) TEC-intron (ENSMUSG00000102286.1, intron 1 of 4) 11596 ENSMUSG00000102286.1 ENSMUSG00000102286 ENSMUST00000193021 Gm37004 TEC Interval_170042 chr9 104009249 104009581 + 0 NA intron (ENSMUSG00000032558.19, intron 5 of 26) protein_coding-intron (ENSMUSG00000032558.19, intron 5 of 26) -7076 ENSMUSG00000111035.1 ENSMUSG00000111035 ENSMUST00000216588 Gm33054 lincRNA Interval_101076 chr2 174948271 174949000 + 0 NA Intergenic Intergenic -61684 ENSMUSG00000078906.9 ENSMUSG00000078906 ENSMUST00000109070 Gm14444 protein_coding Interval_145975 chr7 42767576 42767835 + 0 NA intron (ENSMUSG00000091926.3, intron 5 of 5) protein_coding-intron (ENSMUSG00000091926.3, intron 5 of 5) 17291 ENSMUSG00000092238.1 ENSMUSG00000092238 ENSMUST00000173237 Gm6004 processed_pseudogene Interval_118272 chr4 129968185 129968649 + 0 NA Intergenic Intergenic 8043 ENSMUSG00000085389.7 ENSMUSG00000085389 ENSMUST00000139884 1700003M07Rik lincRNA Interval_142992 chr6 148127634 148127802 + 0 NA intron (ENSMUSG00000030303.15, intron 1 of 12) protein_coding-intron (ENSMUSG00000030303.15, intron 1 of 11) 55490 ENSMUSG00000030304.11 ENSMUSG00000030304 ENSMUST00000132413 Ergic2 protein_coding Interval_154886 chr8 24713496 24713936 + 0 NA exon (ENSMUSG00000110225.1, exon 1 of 1) TEC-exon (ENSMUSG00000110225.1, exon 1 of 1) 2310 ENSMUSG00000110225.1 ENSMUSG00000110225 ENSMUST00000209854 Gm45528 TEC Interval_119268 chr4 136568211 136568839 + 0 NA promoter-TSS (ENSMUSG00000036940.15) protein_coding-promoter-TSS (ENSMUSG00000036940.15) -15983 ENSMUSG00000036940.15 ENSMUSG00000036940 ENSMUST00000170979 Kdm1a protein_coding Interval_116659 chr4 116435530 116437213 + 0 NA promoter-TSS (ENSMUSG00000003810.13) protein_coding-promoter-TSS (ENSMUSG00000003810.13) -12417 ENSMUSG00000082592.1 ENSMUSG00000082592 ENSMUST00000121683 Gm12950 processed_pseudogene Interval_84495 chr19 11877590 11879037 + 0 NA promoter-TSS (ENSMUSG00000051548.4) processed_pseudogene-promoter-TSS (ENSMUSG00000051548.4) 45 ENSMUSG00000051548.4 ENSMUSG00000051548 ENSMUST00000054711 Gm6365 processed_pseudogene Interval_32733 chr11 110171078 110172167 + 0 NA Intergenic Intergenic -3567 ENSMUSG00000041797.7 ENSMUSG00000041797 ENSMUST00000126499 Abca9 protein_coding Interval_63742 chr15 103190854 103191324 + 0 NA TTS (ENSMUSG00000009575.14) protein_coding-TTS (ENSMUSG00000009575.14) 24277 ENSMUSG00000009575.14 ENSMUSG00000009575 ENSMUST00000127191 Cbx5 protein_coding Interval_135604 chr6 41415075 41415343 + 0 NA Intergenic Intergenic -1703 ENSMUSG00000059014.8 ENSMUSG00000059014 ENSMUST00000160346 Gm5409 unprocessed_pseudogene Interval_72999 chr17 34075185 34075887 + 0 NA intron (ENSMUSG00000092383.2, intron 1 of 2) unprocessed_pseudogene-intron (ENSMUSG00000092383.2, intron 1 of 2) 631 ENSMUSG00000092383.2 ENSMUSG00000092383 ENSMUST00000172731 H2-Pb unprocessed_pseudogene Interval_92465 chr2 59878007 59878471 + 0 NA promoter-TSS (ENSMUSG00000026988.15) protein_coding-promoter-TSS (ENSMUSG00000026988.15) -15513 ENSMUSG00000026988.15 ENSMUSG00000026988 ENSMUST00000131285 Wdsub1 protein_coding Interval_51153 chr14 24212950 24213458 + 0 NA intron (ENSMUSG00000021782.14, intron 1 of 31) protein_coding-intron (ENSMUSG00000021782.14, intron 1 of 30) 30187 ENSMUSG00000091079.1 ENSMUSG00000091079 ENSMUST00000163715 Gm17105 sense_intronic Interval_5567 chr1 89859143 89859897 + 0 NA intron (ENSMUSG00000055013.16, intron 15 of 16) protein_coding-intron (ENSMUSG00000055013.16, intron 16 of 17) 34039 ENSMUSG00000103252.1 ENSMUSG00000103252 ENSMUST00000193177 Gm37521 TEC Interval_31647 chr11 101968430 101969592 + 0 NA Intergenic Intergenic -1996 ENSMUSG00000001494.6 ENSMUSG00000001494 ENSMUST00000001534 Sost protein_coding Interval_41597 chr12 116659232 116661386 + 0 NA intron (ENSMUSG00000056553.14, intron 2 of 4) protein_coding-intron (ENSMUSG00000056553.14, intron 2 of 22) 63056 ENSMUSG00000101814.1 ENSMUSG00000101814 ENSMUST00000186869 Gm17807 processed_pseudogene Interval_170371 chr9 107514205 107514898 + 0 NA TTS (ENSMUSG00000010066.15) protein_coding-TTS (ENSMUSG00000010066.15) -6961 ENSMUSG00000010066.15 ENSMUSG00000010066 ENSMUST00000168959 Cacna2d2 protein_coding Interval_95775 chr2 116071608 116072897 + 0 NA intron (ENSMUSG00000086308.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000086308.1, intron 2 of 4) 3844 ENSMUSG00000103562.1 ENSMUSG00000103562 ENSMUST00000195368 2810405F15Rik TEC Interval_126982 chr5 98985516 98986616 + 0 NA intron (ENSMUSG00000029334.14, intron 6 of 18) protein_coding-intron (ENSMUSG00000029334.14, intron 6 of 18) 36156 ENSMUSG00000089659.2 ENSMUSG00000089659 ENSMUST00000160819 Gm3470 processed_pseudogene Interval_135609 chr6 41557413 41558852 + 0 NA intron (ENSMUSG00000076499.3, intron 1 of 1) TR_V_gene-intron (ENSMUSG00000076499.3, intron 1 of 1) 320 ENSMUSG00000076499.3 ENSMUSG00000076499 ENSMUST00000193003 Trbv31 TR_V_gene Interval_95205 chr2 104774864 104775039 + 0 NA intron (ENSMUSG00000074994.6, intron 8 of 12) protein_coding-intron (ENSMUSG00000074994.6, intron 7 of 11) 41809 ENSMUSG00000074994.6 ENSMUSG00000074994 ENSMUST00000238887 Qser1 protein_coding Interval_135727 chr6 45274626 45275560 + 0 NA intron (ENSMUSG00000039419.17, intron 2 of 3) protein_coding-intron (ENSMUSG00000039419.17, intron 1 of 23) -26010 ENSMUSG00000108008.1 ENSMUSG00000108008 ENSMUST00000204742 Gm43869 TEC Interval_60850 chr15 77138281 77138514 + 0 NA intron (ENSMUSG00000033565.18, intron 1 of 3) protein_coding-intron (ENSMUSG00000033565.18, intron 2 of 12) -22595 ENSMUSG00000116298.1 ENSMUSG00000116298 ENSMUST00000230697 4833412C15Rik TEC Interval_31805 chr11 102989367 102990736 + 0 NA Intergenic Intergenic 9870 ENSMUSG00000098613.1 ENSMUSG00000098613 ENSMUST00000184841 Mir6931 miRNA Interval_85752 chr19 30360367 30360880 + 0 NA Intergenic Intergenic 95743 ENSMUSG00000089016.1 ENSMUSG00000089016 ENSMUST00000158391 Gm24883 misc_RNA Interval_141458 chr6 128388766 128389513 + 0 NA intron (ENSMUSG00000085739.1, intron 1 of 1) antisense-intron (ENSMUSG00000085739.1, intron 1 of 1) 10601 ENSMUSG00000085739.1 ENSMUSG00000085739 ENSMUST00000146349 Gm15862 antisense Interval_41953 chr13 5432229 5432697 + 0 NA Intergenic Intergenic -22446 ENSMUSG00000114098.1 ENSMUSG00000114098 ENSMUST00000223343 Gm40660 lincRNA Interval_97293 chr2 133162120 133162432 + 0 NA Intergenic Intergenic -37335 ENSMUSG00000083689.1 ENSMUSG00000083689 ENSMUST00000117717 Gm14094 processed_pseudogene Interval_41971 chr13 5783345 5783537 + 0 NA Intergenic Intergenic 38417 ENSMUSG00000080562.2 ENSMUSG00000080562 ENSMUST00000116912 Gm26043 miRNA Interval_84458 chr19 11165138 11165736 + 0 NA promoter-TSS (ENSMUSG00000024728.13) protein_coding-promoter-TSS (ENSMUSG00000024728.13) -131 ENSMUSG00000024728.13 ENSMUSG00000024728 ENSMUST00000078770 Ms4a19 protein_coding Interval_111715 chr4 26500889 26501339 + 0 NA TTS (ENSMUSG00000081985.1) processed_pseudogene-TTS (ENSMUSG00000081985.1) 545 ENSMUSG00000081985.1 ENSMUSG00000081985 ENSMUST00000120523 Gng2-ps1 processed_pseudogene Interval_77518 chr17 90629935 90630194 + 0 NA promoter-TSS (ENSMUSG00000024109.18) protein_coding-promoter-TSS (ENSMUSG00000024109.18) -62307 ENSMUSG00000093716.1 ENSMUSG00000093716 ENSMUST00000175818 Gm19815 processed_pseudogene Interval_126445 chr5 88611311 88613528 + 0 NA intron (ENSMUSG00000029291.11, intron 3 of 14) protein_coding-intron (ENSMUSG00000029291.11, intron 1 of 12) -34272 ENSMUSG00000029291.11 ENSMUSG00000029291 ENSMUST00000199956 Rufy3 protein_coding Interval_901 chr1 13074029 13075368 + 0 NA exon (ENSMUSG00000099498.1, exon 2 of 4) lincRNA-exon (ENSMUSG00000099498.1, exon 2 of 4) 5860 ENSMUSG00000099498.1 ENSMUSG00000099498 ENSMUST00000187394 Gm29283 lincRNA Interval_4945 chr1 82857570 82858093 + 0 NA intron (ENSMUSG00000026159.13, intron 1 of 5) protein_coding-intron (ENSMUSG00000026159.13, intron 1 of 12) 18162 ENSMUSG00000026159.13 ENSMUSG00000026159 ENSMUST00000186043 Agfg1 protein_coding Interval_68567 chr16 78861787 78862380 + 0 NA Intergenic Intergenic -69194 ENSMUSG00000022860.15 ENSMUSG00000022860 ENSMUST00000231883 Chodl protein_coding Interval_48784 chr13 103210080 103210298 + 0 NA intron (ENSMUSG00000034751.17, intron 1 of 3) protein_coding-intron (ENSMUSG00000034751.17, intron 1 of 4) -49351 ENSMUSG00000091577.2 ENSMUSG00000091577 ENSMUST00000167849 Gm6211 transcribed_processed_pseudogene Interval_4903 chr1 82247555 82248041 + 0 NA intron (ENSMUSG00000055980.2, intron 1 of 1) protein_coding-intron (ENSMUSG00000055980.2, intron 1 of 1) 14686 ENSMUSG00000022591.5 ENSMUSG00000022591 ENSMUST00000023262 Gm9747 protein_coding Interval_88283 chr2 3335787 3336386 + 0 NA promoter-TSS (ENSMUSG00000026644.7) protein_coding-promoter-TSS (ENSMUSG00000026644.7) -82 ENSMUSG00000026644.7 ENSMUSG00000026644 ENSMUST00000228935 Acbd7 protein_coding Interval_72714 chr17 31705340 31705858 + 0 NA Intergenic Intergenic -15174 ENSMUSG00000117656.1 ENSMUSG00000117656 ENSMUST00000237283 Gm50225 lincRNA Interval_87253 chr19 47199797 47200146 + 0 NA intron (ENSMUSG00000118127.1, intron 3 of 4) protein_coding-intron (ENSMUSG00000006435.16, intron 1 of 5) 2061 ENSMUSG00000118127.1 ENSMUSG00000118127 ENSMUST00000236668 Gm36693 antisense Interval_144959 chr7 29108720 29109756 + 0 NA exon (ENSMUSG00000030592.18, exon 13 of 106) protein_coding-exon (ENSMUSG00000030592.18, exon 13 of 106) 15777 ENSMUSG00000030592.18 ENSMUSG00000030592 ENSMUST00000208922 Ryr1 protein_coding Interval_104729 chr3 69879570 69879760 + 0 NA Intergenic Intergenic -19743 ENSMUSG00000043461.13 ENSMUSG00000043461 ENSMUST00000171529 Sptssb protein_coding Interval_32266 chr11 106606234 106608176 + 0 NA intron (ENSMUSG00000040548.16, intron 1 of 1) protein_coding-intron (ENSMUSG00000040548.16, intron 1 of 11) -40095 ENSMUSG00000040548.16 ENSMUSG00000040548 ENSMUST00000153870 Tex2 protein_coding Interval_12658 chr10 4181899 4182234 + 0 NA Intergenic Intergenic 12179 ENSMUSG00000089473.1 ENSMUSG00000089473 ENSMUST00000158848 Gm25369 snoRNA Interval_25068 chr11 43619879 43620113 + 0 NA Intergenic Intergenic -3667 ENSMUSG00000082614.1 ENSMUSG00000082614 ENSMUST00000117511 Gm12149 processed_pseudogene Interval_54444 chr14 69804918 69806146 + 0 NA promoter-TSS (ENSMUSG00000022075.7) protein_coding-promoter-TSS (ENSMUSG00000022075.7) -307 ENSMUSG00000022075.7 ENSMUSG00000022075 ENSMUST00000225088 Rhobtb2 protein_coding Interval_64187 chr16 8914287 8914715 + 0 NA Intergenic Intergenic 7888 ENSMUSG00000068674.3 ENSMUSG00000068674 ENSMUST00000090395 Gm10247 processed_pseudogene Interval_112694 chr4 44119574 44119965 + 0 NA Intergenic Intergenic -3469 ENSMUSG00000084274.2 ENSMUSG00000084274 ENSMUST00000148026 Gm12504 transcribed_processed_pseudogene Interval_159469 chr8 94908846 94909315 + 0 NA intron (ENSMUSG00000063605.5, intron 4 of 8) protein_coding-intron (ENSMUSG00000063605.5, intron 4 of 8) 8441 ENSMUSG00000063605.5 ENSMUSG00000063605 ENSMUST00000162020 Ccdc102a protein_coding Interval_119028 chr4 135073634 135073843 + 0 NA Intergenic Intergenic 46709 ENSMUSG00000086884.1 ENSMUSG00000086884 ENSMUST00000146152 Gm16225 lincRNA Interval_121027 chr4 152311899 152314202 + 0 NA TTS (ENSMUSG00000058498.12) protein_coding-TTS (ENSMUSG00000058498.12) 5408 ENSMUSG00000058498.12 ENSMUSG00000058498 ENSMUST00000146496 Rnf207 protein_coding Interval_144881 chr7 28735055 28736169 + 0 NA intron (ENSMUSG00000030598.15, intron 3 of 4) protein_coding-intron (ENSMUSG00000030598.15, intron 5 of 6) 3112 ENSMUSG00000030598.15 ENSMUSG00000030598 ENSMUST00000167118 Fbxo17 protein_coding Interval_94955 chr2 102149093 102150195 + 0 NA intron (ENSMUSG00000048058.17, intron 1 of 5) protein_coding-intron (ENSMUSG00000048058.17, intron 1 of 5) -11525 ENSMUSG00000048058.17 ENSMUSG00000048058 ENSMUST00000127888 Ldlrad3 protein_coding Interval_98820 chr2 155308508 155309724 + 0 NA intron (ENSMUSG00000038383.16, intron 7 of 11) protein_coding-intron (ENSMUSG00000038383.16, intron 7 of 11) 32227 ENSMUSG00000027602.9 ENSMUSG00000027602 ENSMUST00000154596 Map1lc3a protein_coding Interval_33742 chr11 118231605 118232352 + 0 NA intron (ENSMUSG00000017132.17, intron 1 of 12) protein_coding-intron (ENSMUSG00000017132.17, intron 1 of 12) -19236 ENSMUSG00000017132.17 ENSMUSG00000017132 ENSMUST00000151165 Cyth1 protein_coding Interval_58116 chr15 28054230 28054970 + 0 NA intron (ENSMUSG00000115773.1, intron 5 of 5) lincRNA-intron (ENSMUSG00000115773.1, intron 5 of 5) 13591 ENSMUSG00000115058.1 ENSMUSG00000115058 ENSMUST00000227963 Gm19883 processed_pseudogene Interval_67867 chr16 58408022 58409316 + 0 NA promoter-TSS (ENSMUSG00000086827.1) lincRNA-promoter-TSS (ENSMUSG00000086827.1) -393 ENSMUSG00000086827.1 ENSMUSG00000086827 ENSMUST00000133622 4930461C15Rik lincRNA Interval_63718 chr15 103012111 103012467 + 0 NA TTS (ENSMUSG00000001661.5) protein_coding-TTS (ENSMUSG00000001661.5) -2621 ENSMUSG00000076010.1 ENSMUSG00000076010 ENSMUST00000102056 Mir615 miRNA Interval_47582 chr13 89530651 89531305 + 0 NA Intergenic Intergenic 47441 ENSMUSG00000094463.2 ENSMUSG00000094463 ENSMUST00000178288 Gm8546 processed_pseudogene Interval_168951 chr9 89536314 89536504 + 0 NA Intergenic Intergenic 23975 ENSMUSG00000111806.1 ENSMUSG00000111806 ENSMUST00000217127 Gm47403 lincRNA Interval_148700 chr7 84261284 84261709 + 0 NA intron (ENSMUSG00000015709.9, intron 18 of 19) protein_coding-intron (ENSMUSG00000015709.9, intron 17 of 18) -28577 ENSMUSG00000109091.1 ENSMUSG00000109091 ENSMUST00000207963 Gm44827 lincRNA Interval_171409 chr9 117818930 117819421 + 0 NA intron (ENSMUSG00000039607.17, intron 1 of 3) protein_coding-intron (ENSMUSG00000039607.17, intron 1 of 3) 53506 ENSMUSG00000039607.17 ENSMUSG00000039607 ENSMUST00000210659 Rbms3 protein_coding Interval_2820 chr1 45852866 45853437 + 0 NA Intergenic Intergenic 4603 ENSMUSG00000084817.3 ENSMUSG00000084817 ENSMUST00000153604 Gm5526 processed_pseudogene Interval_42104 chr13 8825513 8825761 + 0 NA intron (ENSMUSG00000021147.17, intron 3 of 5) protein_coding-intron (ENSMUSG00000021147.17, intron 11 of 13) 8735 ENSMUSG00000114094.1 ENSMUSG00000114094 ENSMUST00000220930 Gm48375 TEC Interval_8337 chr1 137446375 137446709 + 0 NA Intergenic Intergenic -79295 ENSMUSG00000088164.1 ENSMUSG00000088164 ENSMUST00000157539 Gm23534 snoRNA Interval_17014 chr10 70439846 70441488 + 0 NA promoter-TSS (ENSMUSG00000043259.15) protein_coding-promoter-TSS (ENSMUSG00000043259.15) -39 ENSMUSG00000043259.15 ENSMUSG00000043259 ENSMUST00000062883 Fam13c protein_coding Interval_41295 chr12 112555116 112555285 + 0 NA Intergenic Intergenic -38453 ENSMUSG00000054013.6 ENSMUSG00000054013 ENSMUST00000222836 Tmem179 protein_coding Interval_84096 chr19 7185438 7186324 + 0 NA intron (ENSMUSG00000036278.7, intron 4 of 10) protein_coding-intron (ENSMUSG00000036278.7, intron 4 of 10) 19894 ENSMUSG00000024767.11 ENSMUSG00000024767 ENSMUST00000123743 Otub1 protein_coding Interval_19118 chr10 94776142 94776598 + 0 NA intron (ENSMUSG00000020024.7, intron 7 of 9) protein_coding-intron (ENSMUSG00000020024.7, intron 13 of 15) 10791 ENSMUSG00000112669.1 ENSMUSG00000112669 ENSMUST00000218201 Gm48689 antisense Interval_167338 chr9 67555551 67555905 + 0 NA intron (ENSMUSG00000052698.15, intron 1 of 57) protein_coding-intron (ENSMUSG00000052698.15, intron 1 of 57) 131225 ENSMUSG00000111412.1 ENSMUSG00000111412 ENSMUST00000216972 Gm47047 antisense Interval_145270 chr7 31067183 31068082 + 0 NA TTS (ENSMUSG00000057092.12) protein_coding-TTS (ENSMUSG00000057092.12) 4082 ENSMUSG00000036560.14 ENSMUSG00000036560 ENSMUST00000172001 Lgi4 protein_coding Interval_24040 chr11 29713638 29714971 + 0 NA intron (ENSMUSG00000020458.16, intron 3 of 8) protein_coding-intron (ENSMUSG00000020458.16, intron 1 of 6) 21356 ENSMUSG00000020458.16 ENSMUSG00000020458 ENSMUST00000126162 Rtn4 protein_coding Interval_2208 chr1 37048970 37049656 + 0 NA intron (ENSMUSG00000050122.19, intron 4 of 26) protein_coding-intron (ENSMUSG00000050122.19, intron 3 of 24) 19980 ENSMUSG00000050122.19 ENSMUSG00000050122 ENSMUST00000194320 Vwa3b protein_coding Interval_159589 chr8 95664091 95664343 + 0 NA Intergenic Intergenic 11177 ENSMUSG00000110701.1 ENSMUSG00000110701 ENSMUST00000212264 Gm6013 processed_pseudogene Interval_109318 chr3 138874895 138875113 + 0 NA intron (ENSMUSG00000028152.10, intron 2 of 3) protein_coding-intron (ENSMUSG00000028152.10, intron 2 of 7) -45842 ENSMUSG00000086123.3 ENSMUSG00000086123 ENSMUST00000153140 Gm16060 processed_pseudogene Interval_56777 chr14 122034601 122035431 + 0 NA intron (ENSMUSG00000071229.3, intron 1 of 1) protein_coding-intron (ENSMUSG00000071229.3, intron 1 of 1) 342 ENSMUSG00000071229.3 ENSMUSG00000071229 ENSMUST00000045976 Timm8a2 protein_coding Interval_59636 chr15 56907942 56908954 + 0 NA intron (ENSMUSG00000115172.1, intron 2 of 2) lincRNA-intron (ENSMUSG00000115172.1, intron 2 of 2) 98176 ENSMUSG00000115172.1 ENSMUSG00000115172 ENSMUST00000228364 Gm2582 lincRNA Interval_169770 chr9 101117616 101117918 + 0 NA exon (ENSMUSG00000103672.1, exon 1 of 1) protein_coding-intron (ENSMUSG00000043154.15, intron 1 of 2) 1066 ENSMUSG00000103672.1 ENSMUSG00000103672 ENSMUST00000194716 Gm37621 TEC Interval_99270 chr2 158570118 158570913 + 0 NA Intergenic Intergenic 40075 ENSMUSG00000086496.1 ENSMUSG00000086496 ENSMUST00000155319 Gm14204 processed_transcript Interval_158825 chr8 86887709 86889014 + 0 NA Intergenic Intergenic 2673 ENSMUSG00000098434.1 ENSMUSG00000098434 ENSMUST00000184161 2010110E17Rik lincRNA Interval_114336 chr4 73545158 73545355 + 0 NA Intergenic Intergenic 43958 ENSMUSG00000077312.1 ENSMUSG00000077312 ENSMUST00000104124 Gm24170 snoRNA Interval_35292 chr12 19953311 19955344 + 0 NA promoter-TSS (ENSMUSG00000095470.1) protein_coding-promoter-TSS (ENSMUSG00000095470.1) -178 ENSMUSG00000095470.1 ENSMUSG00000095470 ENSMUST00000179133 Gm21863 protein_coding Interval_76585 chr17 81740146 81740440 + 0 NA Intergenic Intergenic -1916 ENSMUSG00000054640.15 ENSMUSG00000054640 ENSMUST00000234923 Slc8a1 protein_coding Interval_145105 chr7 30056605 30056827 + 0 NA TTS (ENSMUSG00000098022.7) protein_coding-TTS (ENSMUSG00000098022.7) -5336 ENSMUSG00000053985.10 ENSMUSG00000053985 ENSMUST00000077787 Zfp14 protein_coding Interval_164125 chr9 31708179 31708420 + 0 NA Intergenic Intergenic -30273 ENSMUSG00000110853.1 ENSMUSG00000110853 ENSMUST00000217207 Gm47436 lincRNA Interval_133541 chr6 6265618 6266372 + 0 NA intron (ENSMUSG00000093482.8, intron 1 of 4) lincRNA-intron (ENSMUSG00000093482.8, intron 1 of 3) 17336 ENSMUSG00000093482.8 ENSMUSG00000093482 ENSMUST00000181343 Gm20619 lincRNA Interval_36653 chr12 51772069 51772576 + 0 NA exon (ENSMUSG00000035247.16, exon 24 of 43) protein_coding-exon (ENSMUSG00000035247.16, exon 24 of 43) 10259 ENSMUSG00000035247.16 ENSMUSG00000035247 ENSMUST00000217804 Hectd1 protein_coding Interval_153834 chr8 9405920 9406259 + 0 NA intron (ENSMUSG00000079157.4, intron 1 of 3) protein_coding-intron (ENSMUSG00000079157.4, intron 1 of 2) -30763 ENSMUSG00000109385.1 ENSMUSG00000109385 ENSMUST00000208080 Gm44518 TEC Interval_43679 chr13 34918030 34918333 + 0 NA intron (ENSMUSG00000021414.8, intron 2 of 8) protein_coding-intron (ENSMUSG00000021414.8, intron 1 of 7) -1192 ENSMUSG00000021414.8 ENSMUSG00000021414 ENSMUST00000224613 Fam217a protein_coding Interval_75798 chr17 71467381 71467591 + 0 NA intron (ENSMUSG00000024054.14, intron 1 of 47) protein_coding-intron (ENSMUSG00000024054.14, intron 1 of 47) -1840 ENSMUSG00000024054.14 ENSMUSG00000024054 ENSMUST00000182747 Smchd1 protein_coding Interval_5328 chr1 87620090 87620699 + 0 NA promoter-TSS (ENSMUSG00000026288.14) protein_coding-promoter-TSS (ENSMUSG00000026288.14) 46367 ENSMUSG00000079434.8 ENSMUSG00000079434 ENSMUST00000070898 Neu2 protein_coding Interval_138611 chr6 90428087 90429626 + 0 NA promoter-TSS (ENSMUSG00000048794.14) protein_coding-promoter-TSS (ENSMUSG00000048794.14) -443 ENSMUSG00000048794.14 ENSMUSG00000048794 ENSMUST00000128124 Cfap100 protein_coding Interval_106145 chr3 93653999 93654845 + 0 NA Intergenic Intergenic -1736 ENSMUSG00000103362.1 ENSMUSG00000103362 ENSMUST00000191960 Tdpoz2 protein_coding Interval_42762 chr13 19177615 19178477 + 0 NA promoter-TSS (ENSMUSG00000076744.2) TR_V_gene-promoter-TSS (ENSMUSG00000076744.2) 22 ENSMUSG00000076744.2 ENSMUSG00000076744 ENSMUST00000103553 Trgv7 TR_V_gene Interval_144340 chr7 24563894 24565090 + 0 NA intron (ENSMUSG00000051768.9, intron 3 of 5) protein_coding-intron (ENSMUSG00000051768.9, intron 3 of 16) 17291 ENSMUSG00000051768.9 ENSMUSG00000051768 ENSMUST00000205453 Xrcc1 protein_coding Interval_51509 chr14 29110434 29111148 + 0 NA intron (ENSMUSG00000021991.9, intron 11 of 15) protein_coding-intron (ENSMUSG00000021991.9, intron 14 of 37) 29489 ENSMUSG00000114595.1 ENSMUSG00000114595 ENSMUST00000225160 Gm48004 antisense Interval_42694 chr13 18027081 18027331 + 0 NA Intergenic Intergenic 4387 ENSMUSG00000075053.3 ENSMUSG00000075053 ENSMUST00000099736 Vdac3-ps1 unprocessed_pseudogene Interval_158728 chr8 85584912 85585184 + 0 NA Intergenic Intergenic -14784 ENSMUSG00000110341.1 ENSMUSG00000110341 ENSMUST00000210575 Gm45424 TEC Interval_135 GL456378.1 16662 17211 + 0 NA NA NA NA NA Interval_123488 chr5 32862969 32864334 + 0 NA promoter-TSS (ENSMUSG00000037426.18) protein_coding-promoter-TSS (ENSMUSG00000037426.18) 25522 ENSMUSG00000106654.1 ENSMUSG00000106654 ENSMUST00000199229 Gm2623 processed_pseudogene Interval_122573 chr5 23857190 23857616 + 0 NA Intergenic Intergenic 5193 ENSMUSG00000095205.1 ENSMUSG00000095205 ENSMUST00000175580 Snord93 snoRNA Interval_108661 chr3 129888125 129888314 + 0 NA intron (ENSMUSG00000027999.15, intron 1 of 3) protein_coding-intron (ENSMUSG00000027999.15, intron 1 of 3) 9405 ENSMUSG00000027999.15 ENSMUSG00000027999 ENSMUST00000196736 Pla2g12a protein_coding Interval_149345 chr7 97610247 97610522 + 0 NA intron (ENSMUSG00000086433.1, intron 2 of 2) protein_coding-intron (ENSMUSG00000035623.14, intron 1 of 15) -14943 ENSMUSG00000108442.1 ENSMUSG00000108442 ENSMUST00000205636 Rpl15-ps5 processed_pseudogene Interval_34773 chr12 10870922 10871295 + 0 NA Intergenic Intergenic 29132 ENSMUSG00000066632.3 ENSMUSG00000066632 ENSMUST00000085735 Pgk1-rs7 processed_pseudogene Interval_129494 chr5 120549620 120550162 + 0 NA intron (ENSMUSG00000032741.9, intron 11 of 14) protein_coding-intron (ENSMUSG00000032741.9, intron 11 of 27) 3148 ENSMUSG00000106825.1 ENSMUSG00000106825 ENSMUST00000201971 2510016D11Rik TEC Interval_97921 chr2 145771077 145772555 + 0 NA intron (ENSMUSG00000001768.16, intron 4 of 4) protein_coding-intron (ENSMUSG00000001768.16, intron 4 of 4) -70091 ENSMUSG00000081722.1 ENSMUSG00000081722 ENSMUST00000119964 Gm11763 processed_pseudogene Interval_27105 chr11 62929749 62930375 + 0 NA Intergenic Intergenic -8470 ENSMUSG00000086677.1 ENSMUSG00000086677 ENSMUST00000148598 Tvp23bos antisense Interval_155360 chr8 32312181 32312401 + 0 NA intron (ENSMUSG00000062991.9, intron 1 of 12) protein_coding-intron (ENSMUSG00000062991.9, intron 1 of 8) 126162 ENSMUSG00000089370.1 ENSMUSG00000089370 ENSMUST00000158745 Gm22140 snRNA Interval_44008 chr13 39426049 39426378 + 0 NA Intergenic Intergenic -14352 ENSMUSG00000114512.1 ENSMUSG00000114512 ENSMUST00000226065 Gm47348 lincRNA Interval_15932 chr10 59413658 59413910 + 0 NA intron (ENSMUSG00000009646.13, intron 1 of 2) protein_coding-intron (ENSMUSG00000009646.13, intron 2 of 3) 2757 ENSMUSG00000009646.13 ENSMUSG00000009646 ENSMUST00000162643 Pla2g12b protein_coding Interval_54586 chr14 70837510 70837767 + 0 NA Intergenic Intergenic -15295 ENSMUSG00000099528.1 ENSMUSG00000099528 ENSMUST00000190896 2410012E07Rik lincRNA Interval_129096 chr5 117376268 117376542 + 0 NA promoter-TSS (ENSMUSG00000029364.15) protein_coding-promoter-TSS (ENSMUSG00000029364.15) 753 ENSMUSG00000029364.15 ENSMUSG00000029364 ENSMUST00000136895 Wsb2 protein_coding Interval_877 chr1 12886272 12887082 + 0 NA intron (ENSMUSG00000025938.16, intron 4 of 4) protein_coding-intron (ENSMUSG00000025938.16, intron 5 of 7) 104500 ENSMUSG00000025938.16 ENSMUSG00000025938 ENSMUST00000191566 Slco5a1 protein_coding Interval_81422 chr18 60660894 60662477 + 0 NA Intergenic Intergenic -37423 ENSMUSG00000043079.17 ENSMUSG00000043079 ENSMUST00000139236 Synpo protein_coding Interval_108697 chr3 130396271 130396484 + 0 NA intron (ENSMUSG00000058897.18, intron 4 of 37) protein_coding-intron (ENSMUSG00000058897.18, intron 4 of 37) -143112 ENSMUSG00000105011.1 ENSMUSG00000105011 ENSMUST00000196743 Gm43210 TEC Interval_115757 chr4 103396540 103397237 + 0 NA intron (ENSMUSG00000086136.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000086136.1, intron 1 of 2) 14388 ENSMUSG00000086136.1 ENSMUSG00000086136 ENSMUST00000150345 Gm12718 lincRNA Interval_40378 chr12 104518729 104519904 + 0 NA promoter-TSS (ENSMUSG00000112954.1) lincRNA-promoter-TSS (ENSMUSG00000112954.1) -652 ENSMUSG00000112954.1 ENSMUSG00000112954 ENSMUST00000222329 Gm49732 lincRNA Interval_28285 chr11 74883230 74884110 + 0 NA intron (ENSMUSG00000038351.14, intron 2 of 23) protein_coding-intron (ENSMUSG00000038351.14, intron 2 of 22) -14428 ENSMUSG00000038335.13 ENSMUSG00000038335 ENSMUST00000130910 Tsr1 protein_coding Interval_100972 chr2 173750101 173750428 + 0 NA exon (ENSMUSG00000118399.1, exon 1 of 1) processed_pseudogene-exon (ENSMUSG00000118399.1, exon 1 of 1) 326 ENSMUSG00000118399.1 ENSMUSG00000118399 ENSMUST00000238291 Gm18917 processed_pseudogene Interval_63246 chr15 99914682 99915362 + 0 NA TTS (ENSMUSG00000116255.1) processed_pseudogene-TTS (ENSMUSG00000116255.1) 878 ENSMUSG00000116255.1 ENSMUSG00000116255 ENSMUST00000230306 Gm20564 processed_pseudogene Interval_44953 chr13 50767138 50767444 + 0 NA Intergenic Intergenic -2043 ENSMUSG00000113652.1 ENSMUSG00000113652 ENSMUST00000221281 4930518P08Rik lincRNA Interval_28239 chr11 74609797 74612218 + 0 NA promoter-TSS (ENSMUSG00000038807.19) protein_coding-promoter-TSS (ENSMUSG00000038807.19) -92 ENSMUSG00000038807.19 ENSMUSG00000038807 ENSMUST00000145524 Rap1gap2 protein_coding Interval_101547 chr3 5210313 5211783 + 0 NA intron (ENSMUSG00000086224.8, intron 1 of 2) antisense-intron (ENSMUSG00000086224.8, intron 1 of 2) -1790 ENSMUSG00000103881.1 ENSMUSG00000103881 ENSMUST00000194070 Gm10748 TEC Interval_172408 chrX 18172981 18173168 + 0 NA intron (ENSMUSG00000037369.17, intron 2 of 7) protein_coding-intron (ENSMUSG00000037369.17, intron 2 of 28) 27217 ENSMUSG00000025043.3 ENSMUSG00000025043 ENSMUST00000026018 Dusp21 protein_coding Interval_17690 chr10 79553980 79555622 + 0 NA promoter-TSS (ENSMUSG00000042570.14) protein_coding-promoter-TSS (ENSMUSG00000042570.14) -12841 ENSMUSG00000042570.14 ENSMUSG00000042570 ENSMUST00000167689 Mier2 protein_coding Interval_171717 chr9 120440042 120440320 + 0 NA intron (ENSMUSG00000041794.13, intron 10 of 16) protein_coding-intron (ENSMUSG00000041794.13, intron 10 of 16) -52051 ENSMUSG00000006941.5 ENSMUSG00000006941 ENSMUST00000007139 Eif1b protein_coding Interval_93364 chr2 72436950 72437400 + 0 NA intron (ENSMUSG00000004085.14, intron 18 of 19) protein_coding-intron (ENSMUSG00000004085.14, intron 18 of 19) -39078 ENSMUSG00000055612.15 ENSMUSG00000055612 ENSMUST00000137880 Cdca7 protein_coding Interval_172643 chrX 38847565 38848328 + 0 NA intron (ENSMUSG00000051361.7, intron 1 of 3) protein_coding-intron (ENSMUSG00000051361.7, intron 1 of 3) 58682 ENSMUSG00000081147.1 ENSMUSG00000081147 ENSMUST00000117850 Gm6024 processed_pseudogene Interval_132223 chr5 143415163 143415437 + 0 NA intron (ENSMUSG00000079111.3, intron 2 of 4) protein_coding-intron (ENSMUSG00000079111.3, intron 2 of 4) 11462 ENSMUSG00000079111.3 ENSMUSG00000079111 ENSMUST00000110731 Kdelr2 protein_coding Interval_132304 chr5 144050892 144051670 + 0 NA Intergenic Intergenic 17909 ENSMUSG00000105150.1 ENSMUSG00000105150 ENSMUST00000197465 Gm43615 processed_pseudogene Interval_69933 chr17 3288209 3289109 + 0 NA intron (ENSMUSG00000116858.1, intron 1 of 3) lincRNA-intron (ENSMUSG00000116858.1, intron 1 of 3) -5452 ENSMUSG00000116874.1 ENSMUSG00000116874 ENSMUST00000231652 Gm34035 lincRNA Interval_171314 chr9 116299982 116300583 + 0 NA Intergenic Intergenic -30886 ENSMUSG00000110752.1 ENSMUSG00000110752 ENSMUST00000217456 D730003K21Rik lincRNA Interval_125145 chr5 64847329 64848071 + 0 NA Intergenic Intergenic 43686 ENSMUSG00000106205.1 ENSMUSG00000106205 ENSMUST00000198074 C230096K16Rik TEC Interval_85286 chr19 24387491 24387905 + 0 NA intron (ENSMUSG00000024867.14, intron 5 of 13) protein_coding-intron (ENSMUSG00000024867.14, intron 5 of 14) -28311 ENSMUSG00000085003.1 ENSMUSG00000085003 ENSMUST00000126936 Pip5k1bos antisense Interval_149370 chr7 97766060 97767664 + 0 NA Intergenic Intergenic -28573 ENSMUSG00000042797.9 ENSMUSG00000042797 ENSMUST00000205932 Aqp11 protein_coding Interval_30599 chr11 95366319 95367255 + 0 NA intron (ENSMUSG00000038893.12, intron 4 of 5) protein_coding-intron (ENSMUSG00000038893.12, intron 2 of 7) -8680 ENSMUSG00000038893.12 ENSMUSG00000038893 ENSMUST00000155999 Fam117a protein_coding Interval_404 chr1 4923781 4924258 + 0 NA intron (ENSMUSG00000002459.17, intron 1 of 3) protein_coding-intron (ENSMUSG00000002459.17, intron 1 of 4) 3280 ENSMUSG00000091305.1 ENSMUSG00000091305 ENSMUST00000168963 Gm17100 processed_pseudogene Interval_124510 chr5 49857028 49858321 + 0 NA Intergenic Intergenic 44628 ENSMUSG00000105540.1 ENSMUSG00000105540 ENSMUST00000196623 Gm7988 processed_pseudogene Interval_40877 chr12 109027547 109027761 + 0 NA exon (ENSMUSG00000040877.16, exon 8 of 8) protein_coding-exon (ENSMUSG00000040877.16, exon 8 of 8) 26121 ENSMUSG00000040867.13 ENSMUSG00000040867 ENSMUST00000185745 Begain protein_coding Interval_142921 chr6 146973501 146974071 + 0 NA intron (ENSMUSG00000016487.15, intron 3 of 4) protein_coding-intron (ENSMUSG00000016487.15, intron 2 of 26) -2697 ENSMUSG00000016487.15 ENSMUSG00000016487 ENSMUST00000136837 Ppfibp1 protein_coding Interval_4086 chr1 67927084 67927580 + 0 NA Intergenic Intergenic 24102 ENSMUSG00000104395.1 ENSMUSG00000104395 ENSMUST00000192182 Gm37957 TEC Interval_143940 chr7 18260127 18260648 + 0 NA intron (ENSMUSG00000054005.4, intron 2 of 4) protein_coding-intron (ENSMUSG00000054005.4, intron 2 of 4) 15040 ENSMUSG00000054005.4 ENSMUSG00000054005 ENSMUST00000066780 Mill1 protein_coding Interval_26252 chr11 55437978 55438446 + 0 NA Intergenic Intergenic -17887 ENSMUSG00000018593.13 ENSMUSG00000018593 ENSMUST00000125787 Sparc protein_coding Interval_83328 chr18 84251706 84252422 + 0 NA intron (ENSMUSG00000048410.17, intron 8 of 8) protein_coding-intron (ENSMUSG00000048410.17, intron 2 of 2) 49140 ENSMUSG00000118385.1 ENSMUSG00000118385 ENSMUST00000238064 Gm50311 antisense Interval_109443 chr3 142474028 142475360 + 0 NA Intergenic Intergenic -28102 ENSMUSG00000105504.4 ENSMUSG00000105504 ENSMUST00000199578 Gbp5 protein_coding Interval_10543 chr1 171673090 171673325 + 0 NA Intergenic Intergenic 6663 ENSMUSG00000103137.1 ENSMUSG00000103137 ENSMUST00000194280 Gm37981 processed_pseudogene Interval_87008 chr19 45518527 45518958 + 0 NA intron (ENSMUSG00000025217.15, intron 12 of 13) protein_coding-intron (ENSMUSG00000025217.15, intron 11 of 14) 41789 ENSMUSG00000025218.6 ENSMUSG00000025218 ENSMUST00000026239 Poll protein_coding Interval_32581 chr11 108881195 108881376 + 0 NA Intergenic Intergenic -40051 ENSMUSG00000000142.15 ENSMUSG00000000142 ENSMUST00000139682 Axin2 protein_coding Interval_127286 chr5 102101191 102102508 + 0 NA Intergenic Intergenic 31631 ENSMUSG00000106492.1 ENSMUSG00000106492 ENSMUST00000196325 Gm29707 lincRNA Interval_18222 chr10 83818929 83820005 + 0 NA Intergenic Intergenic -7902 ENSMUSG00000112077.1 ENSMUSG00000112077 ENSMUST00000218819 Gm47245 processed_pseudogene Interval_68597 chr16 80351437 80351607 + 0 NA Intergenic Intergenic 214170 ENSMUSG00000088476.1 ENSMUSG00000088476 ENSMUST00000157851 Gm23083 snoRNA Interval_88195 chr19 60574265 60574816 + 0 NA intron (ENSMUSG00000033417.16, intron 1 of 7) protein_coding-intron (ENSMUSG00000033417.16, intron 1 of 8) -5989 ENSMUSG00000092655.1 ENSMUSG00000092655 ENSMUST00000174914 Gm25238 miRNA Interval_171529 chr9 119041691 119042370 + 0 NA exon (ENSMUSG00000047409.13, exon 8 of 8) protein_coding-exon (ENSMUSG00000047409.13, exon 8 of 8) 10234 ENSMUSG00000065513.1 ENSMUSG00000065513 ENSMUST00000083579 Mir26a-1 miRNA Interval_9189 chr1 154955244 154956072 + 0 NA Intergenic Intergenic -76081 ENSMUSG00000101433.1 ENSMUSG00000101433 ENSMUST00000191584 Gm29441 processed_pseudogene Interval_85504 chr19 27603242 27603770 + 0 NA Intergenic Intergenic 90998 ENSMUSG00000118072.1 ENSMUSG00000118072 ENSMUST00000235994 Gm50101 processed_pseudogene Interval_153755 chr8 6940403 6940821 + 0 NA Intergenic Intergenic 62143 ENSMUSG00000109463.1 ENSMUSG00000109463 ENSMUST00000207758 Gm7506 processed_pseudogene Interval_96093 chr2 119717012 119717517 + 0 NA intron (ENSMUSG00000027304.9, intron 6 of 17) protein_coding-intron (ENSMUSG00000027304.9, intron 6 of 17) 6268 ENSMUSG00000027304.9 ENSMUSG00000027304 ENSMUST00000126984 Rtf1 protein_coding Interval_111045 chr4 11468145 11468544 + 0 NA Intergenic Intergenic -17699 ENSMUSG00000040720.15 ENSMUSG00000040720 ENSMUST00000108307 Virma protein_coding Interval_106287 chr3 95142394 95142978 + 0 NA promoter-TSS (ENSMUSG00000013707.3) protein_coding-promoter-TSS (ENSMUSG00000013707.3) -326 ENSMUSG00000013707.3 ENSMUSG00000013707 ENSMUST00000013851 Tnfaip8l2 protein_coding Interval_168812 chr9 87409410 87409961 + 0 NA Intergenic Intergenic 15435 ENSMUSG00000099385.1 ENSMUSG00000099385 ENSMUST00000188230 Gm9540 processed_pseudogene Interval_12532 chr1 194929789 194931066 + 0 NA Intergenic Intergenic -8524 ENSMUSG00000016494.9 ENSMUSG00000016494 ENSMUST00000194036 Cd34 protein_coding Interval_162347 chr8 127304874 127305350 + 0 NA intron (ENSMUSG00000025812.18, intron 1 of 18) protein_coding-intron (ENSMUSG00000025812.18, intron 3 of 23) 133708 ENSMUSG00000025812.18 ENSMUSG00000025812 ENSMUST00000159940 Pard3 protein_coding Interval_163708 chr9 24770018 24770876 + 0 NA promoter-TSS (ENSMUSG00000031965.15) protein_coding-promoter-TSS (ENSMUSG00000031965.15) 3837 ENSMUSG00000031965.15 ENSMUSG00000031965 ENSMUST00000216564 Tbx20 protein_coding Interval_47418 chr13 83737818 83738916 + 0 NA promoter-TSS (ENSMUSG00000065424.2) miRNA-promoter-TSS (ENSMUSG00000065424.2) 168 ENSMUSG00000102969.1 ENSMUSG00000102969 ENSMUST00000195583 Gm33366 TEC Interval_161957 chr8 124040002 124040609 + 0 NA intron (ENSMUSG00000031976.14, intron 7 of 9) protein_coding-intron (ENSMUSG00000031976.14, intron 6 of 8) 8107 ENSMUSG00000110704.1 ENSMUSG00000110704 ENSMUST00000212460 Gm45732 antisense Interval_23791 chr11 26297124 26297459 + 0 NA Intergenic Intergenic 40412 ENSMUSG00000065889.1 ENSMUSG00000065889 ENSMUST00000083955 Gm22868 snRNA Interval_84285 chr19 9849231 9849964 + 0 NA intron (ENSMUSG00000096872.2, intron 1 of 2) protein_coding-intron (ENSMUSG00000096872.2, intron 1 of 2) 2035 ENSMUSG00000096872.2 ENSMUSG00000096872 ENSMUST00000179814 Scgb2a2 protein_coding Interval_129397 chr5 119731891 119732392 + 0 NA Intergenic Intergenic -40923 ENSMUSG00000086847.1 ENSMUSG00000086847 ENSMUST00000135385 Tbx3os2 lincRNA Interval_125376 chr5 66546972 66547265 + 0 NA promoter-TSS (ENSMUSG00000029207.16) protein_coding-promoter-TSS (ENSMUSG00000029207.16) -12957 ENSMUSG00000106720.1 ENSMUSG00000106720 ENSMUST00000202051 Gm43795 TEC Interval_120806 chr4 150749290 150750353 + 0 NA Intergenic Intergenic -71029 ENSMUSG00000085869.1 ENSMUSG00000085869 ENSMUST00000149065 Gm16079 lincRNA Interval_170565 chr9 108726244 108727019 + 0 NA intron (ENSMUSG00000032601.13, intron 4 of 9) protein_coding-intron (ENSMUSG00000032601.13, intron 4 of 10) 12227 ENSMUSG00000065674.1 ENSMUSG00000065674 ENSMUST00000083740 Gm24259 snRNA Interval_150676 chr7 113255988 113256290 + 0 NA intron (ENSMUSG00000055116.8, intron 3 of 20) protein_coding-intron (ENSMUSG00000055116.8, intron 2 of 19) 21516 ENSMUSG00000055116.8 ENSMUSG00000055116 ENSMUST00000211547 Arntl protein_coding Interval_18811 chr10 91062325 91062700 + 0 NA intron (ENSMUSG00000019979.12, intron 5 of 26) protein_coding-intron (ENSMUSG00000019979.12, intron 5 of 26) 20192 ENSMUSG00000019979.12 ENSMUSG00000019979 ENSMUST00000160788 Apaf1 protein_coding Interval_602 chr1 8613535 8614094 + 0 NA intron (ENSMUSG00000025909.16, intron 11 of 20) protein_coding-intron (ENSMUSG00000025909.16, intron 7 of 16) -25090 ENSMUSG00000093970.1 ENSMUSG00000093970 ENSMUST00000103887 Gm23358 miRNA Interval_32168 chr11 105899059 105899859 + 0 NA promoter-TSS (ENSMUSG00000053580.16) protein_coding-promoter-TSS (ENSMUSG00000053580.16) 23554 ENSMUSG00000081270.1 ENSMUSG00000081270 ENSMUST00000119992 Gm11653 processed_pseudogene Interval_22978 chr11 18345598 18345877 + 0 NA Intergenic Intergenic -18066 ENSMUSG00000081302.1 ENSMUSG00000081302 ENSMUST00000119030 Gm12020 processed_pseudogene Interval_55683 chr14 99018732 99020023 + 0 NA Intergenic Intergenic -25059 ENSMUSG00000060377.4 ENSMUSG00000060377 ENSMUST00000081987 Rpl36a-ps1 protein_coding Interval_66465 chr16 34033689 34035182 + 0 NA intron (ENSMUSG00000061751.16, intron 8 of 15) protein_coding-intron (ENSMUSG00000061751.16, intron 42 of 59) -26978 ENSMUSG00000116835.1 ENSMUSG00000116835 ENSMUST00000231993 Gm49594 processed_pseudogene Interval_9541 chr1 159135415 159135986 + 0 NA intron (ENSMUSG00000104014.1, intron 2 of 4) lincRNA-intron (ENSMUSG00000104014.1, intron 2 of 4) 1428 ENSMUSG00000104014.1 ENSMUSG00000104014 ENSMUST00000195279 4930562F17Rik lincRNA Interval_171061 chr9 114061933 114062258 + 0 NA intron (ENSMUSG00000086596.2, intron 1 of 4) protein_coding-intron (ENSMUSG00000086596.2, intron 1 of 4) 4955 ENSMUSG00000086596.2 ENSMUSG00000086596 ENSMUST00000135338 Susd5 protein_coding Interval_148892 chr7 89866868 89867417 + 0 NA intron (ENSMUSG00000039391.11, intron 14 of 15) protein_coding-intron (ENSMUSG00000039391.11, intron 14 of 14) 36487 ENSMUSG00000039391.11 ENSMUSG00000039391 ENSMUST00000041195 Ccdc81 protein_coding Interval_6262 chr1 104984109 104984401 + 0 NA intron (ENSMUSG00000050840.8, intron 10 of 11) protein_coding-intron (ENSMUSG00000050840.8, intron 10 of 11) -71922 ENSMUSG00000089866.1 ENSMUSG00000089866 ENSMUST00000159213 Gm15699 antisense Interval_3941 chr1 64975729 64976685 + 0 NA Intergenic Intergenic 18397 ENSMUSG00000084416.3 ENSMUSG00000084416 ENSMUST00000120360 Rpl10a-ps1 processed_pseudogene Interval_172683 chrX 42124995 42125800 + 0 NA Intergenic Intergenic 5326 ENSMUSG00000082324.1 ENSMUSG00000082324 ENSMUST00000117575 Gm14615 processed_pseudogene Interval_47102 chr13 75765647 75767222 + 0 NA exon (ENSMUSG00000001542.7, exon 4 of 5) protein_coding-exon (ENSMUSG00000001542.7, exon 4 of 5) -1634 ENSMUSG00000077449.1 ENSMUSG00000077449 ENSMUST00000104261 Gm23127 snoRNA Interval_102760 chr3 30846871 30847684 + 0 NA Intergenic Intergenic -8716 ENSMUSG00000037661.14 ENSMUSG00000037661 ENSMUST00000147697 Gpr160 protein_coding Interval_85573 chr19 28717566 28717978 + 0 NA intron (ENSMUSG00000097735.7, intron 4 of 4) lincRNA-intron (ENSMUSG00000097735.7, intron 4 of 4) 24779 ENSMUSG00000067351.1 ENSMUSG00000067351 ENSMUST00000087473 Rps15a-ps2 processed_pseudogene Interval_73426 chr17 37162403 37163191 + 0 NA Intergenic Intergenic -1303 ENSMUSG00000091601.3 ENSMUSG00000091601 ENSMUST00000171679 Olfr93 protein_coding Interval_143509 chr7 11179407 11180830 + 0 NA Intergenic Intergenic -2282 ENSMUSG00000110379.1 ENSMUSG00000110379 ENSMUST00000209825 Gm6909 unprocessed_pseudogene Interval_81711 chr18 63779947 63781016 + 0 NA intron (ENSMUSG00000040560.10, intron 2 of 3) protein_coding-intron (ENSMUSG00000040560.10, intron 16 of 27) -17264 ENSMUSG00000117977.1 ENSMUSG00000117977 ENSMUST00000236836 Gm50106 antisense Interval_40878 chr12 109032944 109034422 + 0 NA TTS (ENSMUSG00000040867.13) protein_coding-TTS (ENSMUSG00000040867.13) 20092 ENSMUSG00000040867.13 ENSMUSG00000040867 ENSMUST00000185745 Begain protein_coding Interval_161236 chr8 118979394 118980145 + 0 NA intron (ENSMUSG00000031841.19, intron 6 of 7) protein_coding-intron (ENSMUSG00000031841.19, intron 6 of 13) -171696 ENSMUSG00000031841.19 ENSMUSG00000031841 ENSMUST00000151842 Cdh13 protein_coding Interval_58752 chr15 37781708 37782707 + 0 NA intron (ENSMUSG00000051359.15, intron 1 of 2) protein_coding-intron (ENSMUSG00000051359.15, intron 1 of 6) -16806 ENSMUSG00000086313.1 ENSMUSG00000086313 ENSMUST00000156011 Gm15940 sense_intronic Interval_119143 chr4 135828432 135829376 + 0 NA Intergenic Intergenic -24774 ENSMUSG00000081672.1 ENSMUSG00000081672 ENSMUST00000120937 Gm13000 processed_pseudogene Interval_50845 chr14 20174351 20175498 + 0 NA intron (ENSMUSG00000023243.9, intron 1 of 4) protein_coding-intron (ENSMUSG00000023243.9, intron 1 of 4) 25030 ENSMUSG00000114523.1 ENSMUSG00000114523 ENSMUST00000225224 Gm48394 processed_pseudogene Interval_55416 chr14 86993111 86993776 + 0 NA intron (ENSMUSG00000022021.14, intron 8 of 15) protein_coding-intron (ENSMUSG00000022021.14, intron 9 of 27) -72732 ENSMUSG00000077948.2 ENSMUSG00000077948 ENSMUST00000104755 Gm23438 miRNA Interval_7987 chr1 135072867 135073121 + 0 NA intron (ENSMUSG00000042793.13, intron 2 of 17) protein_coding-intron (ENSMUSG00000042793.13, intron 2 of 17) -35967 ENSMUSG00000097988.1 ENSMUSG00000097988 ENSMUST00000182275 Gm10535 antisense Interval_170428 chr9 107904837 107905026 + 0 NA promoter-TSS (ENSMUSG00000089005.1) snRNA-promoter-TSS (ENSMUSG00000089005.1) -297 ENSMUSG00000089005.1 ENSMUSG00000089005 ENSMUST00000158380 Gm23856 snRNA Interval_96992 chr2 130327229 130327914 + 0 NA intron (ENSMUSG00000053552.14, intron 6 of 16) protein_coding-intron (ENSMUSG00000053552.14, intron 6 of 16) 31632 ENSMUSG00000053552.14 ENSMUSG00000053552 ENSMUST00000110287 Ebf4 protein_coding Interval_64072 chr16 7161423 7162444 + 0 NA intron (ENSMUSG00000008658.16, intron 1 of 12) protein_coding-intron (ENSMUSG00000008658.16, intron 3 of 14) -31814 ENSMUSG00000008658.16 ENSMUSG00000008658 ENSMUST00000231031 Rbfox1 protein_coding Interval_102446 chr3 26506091 26506291 + 0 NA Intergenic Intergenic 120120 ENSMUSG00000080368.1 ENSMUSG00000080368 ENSMUST00000116718 Gm25773 miRNA Interval_113230 chr4 50700187 50700465 + 0 NA Intergenic Intergenic 413580 ENSMUSG00000095394.1 ENSMUSG00000095394 ENSMUST00000104120 Gm25485 snoRNA Interval_35635 chr12 26414523 26415772 + 0 NA promoter-TSS (ENSMUSG00000020642.13) protein_coding-promoter-TSS (ENSMUSG00000020642.13) -137 ENSMUSG00000098771.1 ENSMUSG00000098771 ENSMUST00000183713 Mir6538 miRNA Interval_45972 chr13 59711795 59712235 + 0 NA promoter-TSS (ENSMUSG00000091311.3) protein_coding-promoter-TSS (ENSMUSG00000091311.3) -269 ENSMUSG00000091311.3 ENSMUSG00000091311 ENSMUST00000165133 Spata31d1b protein_coding Interval_115063 chr4 89145176 89146518 + 0 NA intron (ENSMUSG00000062937.7, intron 1 of 7) protein_coding-intron (ENSMUSG00000062937.7, intron 1 of 7) 16344 ENSMUSG00000083989.2 ENSMUSG00000083989 ENSMUST00000120724 Gm12607 processed_pseudogene Interval_57939 chr15 25643158 25643474 + 0 NA intron (ENSMUSG00000022272.17, intron 1 of 21) protein_coding-intron (ENSMUSG00000022272.17, intron 1 of 40) 8689 ENSMUSG00000115252.1 ENSMUSG00000115252 ENSMUST00000228949 Gm48996 TEC Interval_14880 chr10 40737523 40738182 + 0 NA intron (ENSMUSG00000045555.3, intron 3 of 4) protein_coding-intron (ENSMUSG00000045555.3, intron 3 of 4) 54570 ENSMUSG00000045555.3 ENSMUSG00000045555 ENSMUST00000058747 Mettl24 protein_coding Interval_146466 chr7 46107358 46107882 + 0 NA promoter-TSS (ENSMUSG00000040136.10) protein_coding-promoter-TSS (ENSMUSG00000040136.10) 4461 ENSMUSG00000110146.1 ENSMUSG00000110146 ENSMUST00000211039 Gm45487 TEC Interval_9499 chr1 158019327 158019608 + 0 NA intron (ENSMUSG00000102789.1, intron 2 of 3) TEC-intron (ENSMUSG00000102789.1, intron 2 of 3) 79082 ENSMUSG00000102789.1 ENSMUSG00000102789 ENSMUST00000192097 Gm38256 TEC Interval_105861 chr3 89799044 89801986 + 0 NA Intergenic Intergenic -14205 ENSMUSG00000118654.1 ENSMUSG00000118654 ENSMUST00000239422 AC102392.1 unitary_pseudogene Interval_32915 chr11 113084278 113085684 + 0 NA intron (ENSMUSG00000087259.7, intron 1 of 3) lincRNA-intron (ENSMUSG00000087259.7, intron 1 of 2) 88096 ENSMUSG00000087259.7 ENSMUSG00000087259 ENSMUST00000150712 2610035D17Rik lincRNA Interval_148788 chr7 87479977 87480254 + 0 NA intron (ENSMUSG00000004651.6, intron 2 of 3) protein_coding-intron (ENSMUSG00000004651.6, intron 2 of 4) 13277 ENSMUSG00000004651.6 ENSMUSG00000004651 ENSMUST00000207834 Tyr protein_coding Interval_72515 chr17 30349304 30349992 + 0 NA intron (ENSMUSG00000062202.14, intron 4 of 7) protein_coding-intron (ENSMUSG00000062202.14, intron 6 of 11) 38569 ENSMUSG00000089222.1 ENSMUSG00000089222 ENSMUST00000158597 Gm25049 snRNA Interval_7599 chr1 132434910 132435185 + 0 NA TTS (ENSMUSG00000042046.15) protein_coding-TTS (ENSMUSG00000042046.15) -27362 ENSMUSG00000042046.15 ENSMUSG00000042046 ENSMUST00000191494 Dstyk protein_coding Interval_36054 chr12 34176923 34177350 + 0 NA intron (ENSMUSG00000004698.11, intron 23 of 26) protein_coding-intron (ENSMUSG00000004698.11, intron 20 of 24) 113999 ENSMUSG00000113756.1 ENSMUSG00000113756 ENSMUST00000221733 Gm18025 processed_pseudogene Interval_2839 chr1 46179559 46181288 + 0 NA intron (ENSMUSG00000041144.12, intron 21 of 64) protein_coding-intron (ENSMUSG00000041144.12, intron 22 of 65) 113570 ENSMUSG00000041144.12 ENSMUSG00000041144 ENSMUST00000185879 Dnah7b protein_coding Interval_119898 chr4 140747928 140748603 + 0 NA intron (ENSMUSG00000025330.6, intron 14 of 15) protein_coding-intron (ENSMUSG00000025330.6, intron 14 of 15) -6618 ENSMUSG00000040935.12 ENSMUSG00000040935 ENSMUST00000130267 Padi6 protein_coding Interval_38548 chr12 80059997 80061372 + 0 NA intron (ENSMUSG00000111933.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000111933.1, intron 1 of 1) 20750 ENSMUSG00000111933.1 ENSMUSG00000111933 ENSMUST00000218323 Gm36660 lincRNA Interval_155499 chr8 33929154 33931822 + 0 NA promoter-TSS (ENSMUSG00000031586.17) protein_coding-promoter-TSS (ENSMUSG00000031586.17) -1096 ENSMUSG00000031586.17 ENSMUSG00000031586 ENSMUST00000231942 Rbpms protein_coding Interval_15002 chr10 41823909 41824197 + 0 NA intron (ENSMUSG00000038332.13, intron 1 of 9) protein_coding-intron (ENSMUSG00000038332.13, intron 1 of 9) -2485 ENSMUSG00000111131.1 ENSMUSG00000111131 ENSMUST00000214902 9930024M15Rik TEC Interval_51744 chr14 31891091 31892034 + 0 NA Intergenic Intergenic -14966 ENSMUSG00000046005.4 ENSMUSG00000046005 ENSMUST00000143315 D830044D21Rik lincRNA Interval_88084 chr19 58931064 58932155 + 0 NA intron (ENSMUSG00000025092.7, intron 2 of 2) protein_coding-intron (ENSMUSG00000025092.7, intron 2 of 2) -19850 ENSMUSG00000092813.1 ENSMUSG00000092813 ENSMUST00000175072 Mir3086 miRNA Interval_5277 chr1 87190509 87192356 + 0 NA intron (ENSMUSG00000026251.13, intron 2 of 2) protein_coding-intron (ENSMUSG00000026251.13, intron 2 of 11) 825 ENSMUSG00000026251.13 ENSMUSG00000026251 ENSMUST00000186373 Chrnd protein_coding Interval_85443 chr19 26476146 26476336 + 0 NA Intergenic Intergenic 8209 ENSMUSG00000118001.1 ENSMUSG00000118001 ENSMUST00000237584 Gm34808 lincRNA Interval_147650 chr7 70618057 70619035 + 0 NA Intergenic Intergenic -20064 ENSMUSG00000109294.1 ENSMUSG00000109294 ENSMUST00000208887 Gm44808 lincRNA Interval_90396 chr2 30162020 30162399 + 0 NA Intergenic Intergenic 2811 ENSMUSG00000085401.2 ENSMUSG00000085401 ENSMUST00000120862 Slc39a1-ps processed_pseudogene Interval_102976 chr3 33954841 33956686 + 0 NA promoter-TSS (ENSMUSG00000106584.1) TEC-promoter-TSS (ENSMUSG00000106584.1) -437 ENSMUSG00000106584.1 ENSMUSG00000106584 ENSMUST00000200282 4930502C17Rik TEC Interval_79400 chr18 31666437 31666980 + 0 NA exon (ENSMUSG00000024260.14, exon 9 of 21) protein_coding-exon (ENSMUSG00000024260.14, exon 9 of 21) 32337 ENSMUSG00000024260.14 ENSMUSG00000024260 ENSMUST00000234772 Sap130 protein_coding Interval_14338 chr10 31026766 31027156 + 0 NA intron (ENSMUSG00000111778.1, intron 3 of 4) lincRNA-intron (ENSMUSG00000111778.1, intron 4 of 4) 39281 ENSMUSG00000111778.1 ENSMUSG00000111778 ENSMUST00000217645 Gm30676 lincRNA Interval_69229 chr16 91552032 91552557 + 0 NA intron (ENSMUSG00000022965.8, intron 1 of 3) protein_coding-intron (ENSMUSG00000022965.8, intron 1 of 6) -9029 ENSMUSG00000022965.8 ENSMUSG00000022965 ENSMUST00000130404 Ifngr2 protein_coding Interval_161381 chr8 120100528 120101829 + 0 NA promoter-TSS (ENSMUSG00000031823.14) protein_coding-promoter-TSS (ENSMUSG00000031823.14) -404 ENSMUSG00000097944.1 ENSMUSG00000097944 ENSMUST00000183021 A130014A01Rik bidirectional_promoter_lncRNA Interval_158815 chr8 86839786 86842827 + 0 NA exon (ENSMUSG00000031652.11, exon 7 of 7) protein_coding-exon (ENSMUSG00000031652.11, exon 7 of 7) 11114 ENSMUSG00000031652.11 ENSMUSG00000031652 ENSMUST00000210029 N4bp1 protein_coding Interval_161413 chr8 120323045 120323330 + 0 NA intron (ENSMUSG00000031822.20, intron 1 of 2) protein_coding-intron (ENSMUSG00000092329.1, intron 1 of 15) -94957 ENSMUSG00000097960.1 ENSMUSG00000097960 ENSMUST00000183235 A330074K22Rik lincRNA Interval_140003 chr6 113343398 113344755 + 0 NA promoter-TSS (ENSMUSG00000030272.15) protein_coding-promoter-TSS (ENSMUSG00000030272.15) -113 ENSMUSG00000030272.15 ENSMUSG00000030272 ENSMUST00000156853 Camk1 protein_coding Interval_118944 chr4 134612171 134612596 + 0 NA intron (ENSMUSG00000037306.13, intron 2 of 8) protein_coding-intron (ENSMUSG00000037306.13, intron 3 of 12) -44532 ENSMUSG00000099289.1 ENSMUSG00000099289 ENSMUST00000185007 Mir6403 miRNA Interval_71559 chr17 24557096 24557562 + 0 NA intron (ENSMUSG00000032855.6, intron 1 of 45) protein_coding-intron (ENSMUSG00000032855.6, intron 1 of 45) 23415 ENSMUSG00000117423.1 ENSMUSG00000117423 ENSMUST00000234764 Gm33508 antisense Interval_135875 chr6 48103122 48103471 + 0 NA Intergenic Intergenic -21018 ENSMUSG00000057691.8 ENSMUSG00000057691 ENSMUST00000203994 Zfp746 protein_coding Interval_4653 chr1 75704575 75705730 + 0 NA Intergenic Intergenic 68762 ENSMUSG00000082012.1 ENSMUSG00000082012 ENSMUST00000121823 Gm5257 processed_pseudogene Interval_59933 chr15 62063457 62063938 + 0 NA intron (ENSMUSG00000097039.8, intron 1 of 6) lincRNA-intron (ENSMUSG00000097039.8, intron 1 of 8) -16548 ENSMUSG00000098308.1 ENSMUSG00000098308 ENSMUST00000185059 Gm27782 misc_RNA Interval_118178 chr4 129377131 129377998 + 0 NA intron (ENSMUSG00000028807.2, intron 1 of 4) protein_coding-intron (ENSMUSG00000028807.2, intron 1 of 4) 552 ENSMUSG00000028807.2 ENSMUSG00000028807 ENSMUST00000030610 Zbtb8a protein_coding Interval_93787 chr2 76880995 76881784 + 0 NA intron (ENSMUSG00000051747.15, intron 14 of 50) protein_coding-intron (ENSMUSG00000051747.15, intron 46 of 190) -44575 ENSMUSG00000051747.15 ENSMUSG00000051747 ENSMUST00000147048 Ttn protein_coding Interval_12695 chr10 4360475 4362331 + 0 NA Intergenic Intergenic 12472 ENSMUSG00000075327.10 ENSMUSG00000075327 ENSMUST00000215860 Zbtb2 protein_coding Interval_145285 chr7 31139831 31140251 + 0 NA promoter-TSS (ENSMUSG00000001248.15) protein_coding-promoter-TSS (ENSMUSG00000001248.15) -5773 ENSMUSG00000001248.15 ENSMUSG00000001248 ENSMUST00000186723 Gramd1a protein_coding Interval_41600 chr12 116708186 116708402 + 0 NA intron (ENSMUSG00000056553.14, intron 2 of 4) protein_coding-intron (ENSMUSG00000056553.14, intron 2 of 22) 111041 ENSMUSG00000101814.1 ENSMUSG00000101814 ENSMUST00000186869 Gm17807 processed_pseudogene Interval_88981 chr2 13956118 13957297 + 0 NA intron (ENSMUSG00000063275.15, intron 7 of 7) protein_coding-intron (ENSMUSG00000063275.15, intron 7 of 7) 63342 ENSMUSG00000102553.1 ENSMUSG00000102553 ENSMUST00000191894 D930036K23Rik TEC Interval_104923 chr3 79028650 79029258 + 0 NA Intergenic Intergenic 49032 ENSMUSG00000077487.1 ENSMUSG00000077487 ENSMUST00000104299 Gm23440 snoRNA Interval_8526 chr1 140619608 140620163 + 0 NA intron (ENSMUSG00000102368.1, intron 2 of 3) antisense-intron (ENSMUSG00000102368.1, intron 2 of 3) 36519 ENSMUSG00000102368.1 ENSMUSG00000102368 ENSMUST00000193820 4930590L20Rik antisense Interval_53340 chr14 56410479 56410824 + 0 NA intron (ENSMUSG00000000365.9, intron 2 of 10) protein_coding-intron (ENSMUSG00000000365.9, intron 2 of 36) -6115 ENSMUSG00000088761.1 ENSMUSG00000088761 ENSMUST00000158136 Gm24392 snRNA Interval_64571 chr16 13401057 13402024 + 0 NA exon (ENSMUSG00000009569.14, exon 12 of 17) protein_coding-exon (ENSMUSG00000009569.14, exon 12 of 17) 43119 ENSMUSG00000009569.14 ENSMUSG00000009569 ENSMUST00000149359 Mrtfb protein_coding Interval_70194 chr17 6079083 6080248 + 0 NA promoter-TSS (ENSMUSG00000015659.12) protein_coding-promoter-TSS (ENSMUSG00000015659.12) -172 ENSMUSG00000034345.14 ENSMUSG00000034345 ENSMUST00000100955 Gtf2h5 protein_coding Interval_16109 chr10 60783275 60784123 + 0 NA intron (ENSMUSG00000020099.8, intron 1 of 15) protein_coding-intron (ENSMUSG00000020099.8, intron 1 of 16) 30624 ENSMUSG00000112592.1 ENSMUSG00000112592 ENSMUST00000218180 Gm19972 TEC Interval_136129 chr6 51383917 51384165 + 0 NA intron (ENSMUSG00000107660.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000107660.1, intron 1 of 2) 4331 ENSMUSG00000107660.1 ENSMUSG00000107660 ENSMUST00000204678 Gm6559 lincRNA Interval_19839 chr10 110113124 110113590 + 0 NA intron (ENSMUSG00000020181.18, intron 3 of 40) protein_coding-intron (ENSMUSG00000020181.18, intron 3 of 4) 13538 ENSMUSG00000112556.1 ENSMUSG00000112556 ENSMUST00000218053 Gm47339 TEC Interval_101611 chr3 7699139 7699493 + 0 NA Intergenic Intergenic -85589 ENSMUSG00000040329.14 ENSMUSG00000040329 ENSMUST00000191681 Il7 protein_coding Interval_172775 chrX 48532199 48532727 + 0 NA Intergenic Intergenic 13178 ENSMUSG00000031104.2 ENSMUSG00000031104 ENSMUST00000033430 Rab33a protein_coding Interval_33213 chr11 115257741 115258791 + 0 NA exon (ENSMUSG00000020734.13, exon 3 of 13) protein_coding-exon (ENSMUSG00000020734.13, exon 3 of 13) 4988 ENSMUSG00000089544.1 ENSMUSG00000089544 ENSMUST00000158919 Gm25837 miRNA Interval_151631 chr7 125514277 125514533 + 0 NA Intergenic Intergenic -32864 ENSMUSG00000108615.1 ENSMUSG00000108615 ENSMUST00000206925 Gm4973 processed_pseudogene Interval_28758 chr11 78137194 78138286 + 0 NA intron (ENSMUSG00000037750.16, intron 1 of 2) protein_coding-intron (ENSMUSG00000037750.16, intron 1 of 2) 11698 ENSMUSG00000060727.4 ENSMUSG00000060727 ENSMUST00000118132 Gm12571 processed_pseudogene Interval_47509 chr13 85990096 85990405 + 0 NA Intergenic Intergenic 54798 ENSMUSG00000064917.1 ENSMUSG00000064917 ENSMUST00000082983 Gm22574 TEC Interval_77157 chr17 86962390 86964717 + 0 NA exon (ENSMUSG00000024143.15, exon 1 of 5) protein_coding-exon (ENSMUSG00000024143.15, exon 1 of 5) -6819 ENSMUSG00000117628.1 ENSMUSG00000117628 ENSMUST00000234698 Gm50012 sense_intronic Interval_167853 chr9 73079203 73080358 + 0 NA intron (ENSMUSG00000032202.11, intron 2 of 3) protein_coding-intron (ENSMUSG00000032202.11, intron 2 of 5) 18829 ENSMUSG00000098468.1 ENSMUSG00000098468 ENSMUST00000184223 Gm27186 processed_pseudogene Interval_164918 chr9 43085468 43086776 + 0 NA intron (ENSMUSG00000059495.14, intron 1 of 4) protein_coding-intron (ENSMUSG00000059495.14, intron 1 of 41) 30414 ENSMUSG00000048503.7 ENSMUSG00000048503 ENSMUST00000216126 Tlcd5 protein_coding Interval_43652 chr13 34512493 34512817 + 0 NA Intergenic Intergenic -6144 ENSMUSG00000113998.1 ENSMUSG00000113998 ENSMUST00000223275 Gm40909 lincRNA Interval_41634 chr12 117240139 117240871 + 0 NA intron (ENSMUSG00000101930.1, intron 2 of 2) protein_coding-intron (ENSMUSG00000056553.14, intron 17 of 22) -10312 ENSMUSG00000065538.1 ENSMUSG00000065538 ENSMUST00000083604 Mir153 miRNA Interval_121262 chr4 154502484 154503078 + 0 NA intron (ENSMUSG00000039410.16, intron 2 of 2) protein_coding-intron (ENSMUSG00000039410.16, intron 2 of 16) -47501 ENSMUSG00000086565.1 ENSMUSG00000086565 ENSMUST00000143888 Gm13133 antisense Interval_134285 chr6 24580430 24580840 + 0 NA Intergenic Intergenic -13895 ENSMUSG00000107189.1 ENSMUSG00000107189 ENSMUST00000202403 Gm42689 processed_pseudogene Interval_54162 chr14 65833344 65834558 + 0 NA promoter-TSS (ENSMUSG00000022034.10) protein_coding-promoter-TSS (ENSMUSG00000022034.10) -43 ENSMUSG00000022034.10 ENSMUSG00000022034 ENSMUST00000225853 Esco2 protein_coding Interval_17426 chr10 76559074 76559261 + 0 NA intron (ENSMUSG00000086241.2, intron 1 of 3) antisense-intron (ENSMUSG00000086241.2, intron 1 of 3) 3059 ENSMUSG00000086241.2 ENSMUSG00000086241 ENSMUST00000127576 4930483K19Rik antisense Interval_170743 chr9 110475954 110477387 + 0 NA promoter-TSS (ENSMUSG00000032489.17) protein_coding-promoter-TSS (ENSMUSG00000032489.17) -288 ENSMUSG00000032489.17 ENSMUSG00000032489 ENSMUST00000084952 Kif9 protein_coding Interval_101089 chr2 177856713 177857721 + 0 NA Intergenic Intergenic -1714 ENSMUSG00000081574.1 ENSMUSG00000081574 ENSMUST00000121881 Gm14429 unprocessed_pseudogene Interval_159113 chr8 90793363 90793800 + 0 NA Intergenic Intergenic -2634 ENSMUSG00000105321.1 ENSMUSG00000105321 ENSMUST00000198683 Gm44382 miRNA Interval_164920 chr9 43091254 43091549 + 0 NA intron (ENSMUSG00000059495.14, intron 1 of 4) protein_coding-intron (ENSMUSG00000059495.14, intron 1 of 41) 25135 ENSMUSG00000048503.7 ENSMUSG00000048503 ENSMUST00000216126 Tlcd5 protein_coding Interval_104518 chr3 67342941 67343230 + 0 NA intron (ENSMUSG00000034544.17, intron 7 of 8) protein_coding-intron (ENSMUSG00000034544.17, intron 6 of 8) -31040 ENSMUSG00000048416.15 ENSMUSG00000048416 ENSMUST00000061322 Mlf1 protein_coding Interval_76055 chr17 74616921 74617164 + 0 NA promoter-TSS (ENSMUSG00000097546.1) antisense-promoter-TSS (ENSMUSG00000097546.1) 77 ENSMUSG00000097546.1 ENSMUSG00000097546 ENSMUST00000181387 Gm26749 antisense Interval_151733 chr7 126320110 126320391 + 0 NA Intergenic Intergenic -20334 ENSMUSG00000066180.5 ENSMUSG00000066180 ENSMUST00000084598 Gm10155 processed_pseudogene Interval_82245 chr18 69570938 69571316 + 0 NA intron (ENSMUSG00000053477.17, intron 7 of 8) protein_coding-intron (ENSMUSG00000053477.17, intron 9 of 20) 19164 ENSMUSG00000088659.1 ENSMUSG00000088659 ENSMUST00000158034 Gm24845 rRNA Interval_93908 chr2 78928321 78928760 + 0 NA Intergenic Intergenic -44132 ENSMUSG00000102286.1 ENSMUSG00000102286 ENSMUST00000193021 Gm37004 TEC Interval_123429 chr5 32458506 32459750 + 0 NA promoter-TSS (ENSMUSG00000014956.15) protein_coding-promoter-TSS (ENSMUSG00000014956.15) -94 ENSMUSG00000014956.15 ENSMUSG00000014956 ENSMUST00000201880 Ppp1cb protein_coding Interval_67559 chr16 50792774 50793440 + 0 NA Intergenic Intergenic 9629 ENSMUSG00000092276.2 ENSMUSG00000092276 ENSMUST00000174511 1700116B05Rik lincRNA Interval_92046 chr2 52877618 52878406 + 0 NA intron (ENSMUSG00000036053.17, intron 1 of 26) protein_coding-intron (ENSMUSG00000036053.17, intron 1 of 26) 20152 ENSMUSG00000036053.17 ENSMUSG00000036053 ENSMUST00000050719 Fmnl2 protein_coding Interval_83390 chr18 84812259 84812554 + 0 NA intron (ENSMUSG00000117781.1, intron 7 of 10) protein_coding-intron (ENSMUSG00000117781.1, intron 7 of 10) -9596 ENSMUSG00000088070.1 ENSMUSG00000088070 ENSMUST00000157445 Gm22819 misc_RNA Interval_94509 chr2 91757950 91758160 + 0 NA intron (ENSMUSG00000040506.16, intron 1 of 8) protein_coding-intron (ENSMUSG00000040506.16, intron 1 of 17) 27873 ENSMUSG00000040506.16 ENSMUSG00000040506 ENSMUST00000142224 Ambra1 protein_coding Interval_113054 chr4 47247005 47247244 + 0 NA intron (ENSMUSG00000028339.17, intron 3 of 39) protein_coding-intron (ENSMUSG00000028339.17, intron 3 of 38) -11411 ENSMUSG00000028339.17 ENSMUSG00000028339 ENSMUST00000107730 Col15a1 protein_coding Interval_20907 chr10 121902599 121902818 + 0 NA intron (ENSMUSG00000020121.15, intron 3 of 3) protein_coding-intron (ENSMUSG00000020121.15, intron 3 of 21) -70650 ENSMUSG00000112596.1 ENSMUSG00000112596 ENSMUST00000218664 Gm48804 TEC Interval_101901 chr3 10685080 10685703 + 0 NA Intergenic Intergenic 39075 ENSMUSG00000104451.1 ENSMUSG00000104451 ENSMUST00000191685 Gm37831 TEC Interval_77351 chr17 88132616 88133392 + 0 NA Intergenic Intergenic 7492 ENSMUSG00000058869.9 ENSMUSG00000058869 ENSMUST00000182679 Gm4832 transcribed_processed_pseudogene Interval_71821 chr17 26298040 26298235 + 0 NA Intergenic Intergenic -11076 ENSMUSG00000084893.3 ENSMUSG00000084893 ENSMUST00000128900 Hba-ps4 unprocessed_pseudogene Interval_37633 chr12 70603842 70604546 + 0 NA Intergenic Intergenic -45988 ENSMUSG00000114005.1 ENSMUSG00000114005 ENSMUST00000220504 Gm24474 lincRNA Interval_26444 chr11 57904009 57904306 + 0 NA Intergenic Intergenic 23261 ENSMUSG00000084223.1 ENSMUSG00000084223 ENSMUST00000119500 Gm12244 processed_pseudogene Interval_138176 chr6 85915281 85916551 + 0 NA promoter-TSS (ENSMUSG00000057103.11) protein_coding-promoter-TSS (ENSMUSG00000057103.11) 178 ENSMUSG00000054226.13 ENSMUSG00000054226 ENSMUST00000149026 Tprkb protein_coding Interval_32325 chr11 106961575 106962124 + 0 NA Intergenic Intergenic 11241 ENSMUSG00000086481.1 ENSMUSG00000086481 ENSMUST00000150366 Gm11707 lincRNA Interval_103887 chr3 54528442 54528704 + 0 NA Intergenic Intergenic 47113 ENSMUSG00000069014.4 ENSMUSG00000069014 ENSMUST00000198699 Gm5641 transcribed_processed_pseudogene Interval_39004 chr12 84399342 84399860 + 0 NA intron (ENSMUSG00000021236.16, intron 2 of 15) protein_coding-intron (ENSMUSG00000021236.16, intron 1 of 14) 9383 ENSMUSG00000021236.16 ENSMUSG00000021236 ENSMUST00000136511 Entpd5 protein_coding Interval_14273 chr10 30215561 30216297 + 0 NA Intergenic Intergenic -15437 ENSMUSG00000075266.5 ENSMUSG00000075266 ENSMUST00000099985 Cenpw protein_coding Interval_131222 chr5 135892641 135893385 + 0 NA Intergenic Intergenic 3473 ENSMUSG00000105047.1 ENSMUSG00000105047 ENSMUST00000196247 Gm42533 processed_pseudogene Interval_87811 chr19 56150883 56151474 + 0 NA Intergenic Intergenic 44868 ENSMUSG00000117695.1 ENSMUSG00000117695 ENSMUST00000238174 Gm31912 lincRNA Interval_145319 chr7 32553568 32554510 + 0 NA Intergenic Intergenic 8280 ENSMUSG00000094827.3 ENSMUSG00000094827 ENSMUST00000182864 Gm5327 processed_pseudogene Interval_112884 chr4 45811018 45811947 + 0 NA intron (ENSMUSG00000035551.6, intron 4 of 4) protein_coding-intron (ENSMUSG00000035551.6, intron 4 of 4) 4881 ENSMUSG00000035551.6 ENSMUSG00000035551 ENSMUST00000145102 Igfbpl1 protein_coding Interval_171758 chr9 120759671 120760436 + 0 NA Intergenic Intergenic -4527 ENSMUSG00000110726.1 ENSMUSG00000110726 ENSMUST00000215769 Gm18101 processed_pseudogene Interval_45522 chr13 55640472 55641379 + 0 NA intron (ENSMUSG00000021500.17, intron 3 of 15) protein_coding-intron (ENSMUSG00000021500.17, intron 3 of 21) 17727 ENSMUSG00000021501.4 ENSMUSG00000021501 ENSMUST00000165154 Caml protein_coding Interval_104828 chr3 75612077 75612296 + 0 NA TTS (ENSMUSG00000027834.15) protein_coding-TTS (ENSMUSG00000027834.15) -7161 ENSMUSG00000102625.1 ENSMUSG00000102625 ENSMUST00000192682 Gm37672 TEC Interval_165777 chr9 52685916 52686521 + 0 NA intron (ENSMUSG00000111020.1, intron 1 of 4) lincRNA-intron (ENSMUSG00000111020.1, intron 1 of 4) 6355 ENSMUSG00000111020.1 ENSMUSG00000111020 ENSMUST00000213681 Gm1715 lincRNA Interval_158729 chr8 85589582 85590735 + 0 NA Intergenic Intergenic -9674 ENSMUSG00000110341.1 ENSMUSG00000110341 ENSMUST00000210575 Gm45424 TEC Interval_15422 chr10 45916638 45917354 + 0 NA Intergenic Intergenic 41691 ENSMUSG00000110841.1 ENSMUSG00000110841 ENSMUST00000217344 Gpx4-ps2 transcribed_processed_pseudogene Interval_22369 chr11 9201826 9203028 + 0 NA intron (ENSMUSG00000004668.14, intron 1 of 5) protein_coding-intron (ENSMUSG00000004668.14, intron 1 of 61) 8976 ENSMUSG00000004668.14 ENSMUSG00000004668 ENSMUST00000151522 Abca13 protein_coding Interval_80794 chr18 47153704 47154575 + 0 NA promoter-TSS (ENSMUSG00000093158.1) miRNA-promoter-TSS (ENSMUSG00000093158.1) -75 ENSMUSG00000117350.1 ENSMUSG00000117350 ENSMUST00000234752 Gm49975 processed_transcript Interval_24454 chr11 33403567 33404430 + 0 NA intron (ENSMUSG00000040594.19, intron 2 of 9) protein_coding-intron (ENSMUSG00000040594.19, intron 14 of 27) -8732 ENSMUSG00000069913.3 ENSMUSG00000069913 ENSMUST00000118265 Anp32-ps processed_pseudogene Interval_166413 chr9 59269758 59270239 + 0 NA Intergenic Intergenic -21560 ENSMUSG00000025236.11 ENSMUSG00000025236 ENSMUST00000215994 Adpgk protein_coding Interval_141460 chr6 128408409 128409379 + 0 NA TTS (ENSMUSG00000001518.12) protein_coding-TTS (ENSMUSG00000001518.12) 8601 ENSMUSG00000001520.12 ENSMUSG00000001520 ENSMUST00000204836 Nrip2 protein_coding Interval_74011 chr17 46041088 46043122 + 0 NA Intergenic Intergenic -17241 ENSMUSG00000023951.18 ENSMUSG00000023951 ENSMUST00000146149 Vegfa protein_coding Interval_155279 chr8 30573281 30573528 + 0 NA intron (ENSMUSG00000097044.1, intron 2 of 3) lincRNA-intron (ENSMUSG00000097044.1, intron 2 of 3) 5011 ENSMUSG00000097044.1 ENSMUSG00000097044 ENSMUST00000180571 4933433F19Rik lincRNA Interval_115327 chr4 96577279 96577499 + 0 NA exon (ENSMUSG00000015224.10, exon 6 of 6) protein_coding-exon (ENSMUSG00000015224.10, exon 6 of 6) 14189 ENSMUSG00000015224.10 ENSMUSG00000015224 ENSMUST00000126509 Cyp2j9 protein_coding Interval_3521 chr1 59298575 59299033 + 0 NA promoter-TSS (ENSMUSG00000026023.16) protein_coding-promoter-TSS (ENSMUSG00000026023.16) -132 ENSMUSG00000026023.16 ENSMUSG00000026023 ENSMUST00000162906 Cdk15 protein_coding Interval_161189 chr8 118379520 118380211 + 0 NA intron (ENSMUSG00000031841.19, intron 2 of 8) protein_coding-intron (ENSMUSG00000031841.19, intron 1 of 13) 2326 ENSMUSG00000110662.1 ENSMUSG00000110662 ENSMUST00000213075 Gm45722 processed_pseudogene Interval_52834 chr14 50961461 50961731 + 0 NA intron (ENSMUSG00000068417.8, intron 2 of 3) protein_coding-intron (ENSMUSG00000068417.8, intron 2 of 5) 5352 ENSMUSG00000068417.8 ENSMUSG00000068417 ENSMUST00000228593 Pnp2 protein_coding Interval_130646 chr5 129424113 129424750 + 0 NA Intergenic Intergenic 60311 ENSMUSG00000104681.1 ENSMUSG00000104681 ENSMUST00000199076 Gm43001 lincRNA Interval_166820 chr9 62979995 62981287 + 0 NA intron (ENSMUSG00000032405.10, intron 1 of 4) protein_coding-intron (ENSMUSG00000032405.10, intron 1 of 13) 7283 ENSMUSG00000032405.10 ENSMUSG00000032405 ENSMUST00000215455 Pias1 protein_coding Interval_48654 chr13 100869943 100870321 + 0 NA intron (ENSMUSG00000100596.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000100596.1, intron 1 of 2) -2648 ENSMUSG00000104450.1 ENSMUSG00000104450 ENSMUST00000195282 Gm37830 TEC Interval_141136 chr6 125195540 125196918 + 0 NA TTS (ENSMUSG00000030335.6) protein_coding-TTS (ENSMUSG00000030335.6) 437 ENSMUSG00000093157.1 ENSMUSG00000093157 ENSMUST00000175416 Mir3098 miRNA Interval_102939 chr3 32983757 32984063 + 0 NA TTS (ENSMUSG00000104283.1) antisense-TTS (ENSMUSG00000104283.1) 9234 ENSMUSG00000104283.1 ENSMUSG00000104283 ENSMUST00000195007 Gm37459 antisense Interval_43363 chr13 29690670 29691005 + 0 NA intron (ENSMUSG00000006191.17, intron 8 of 11) protein_coding-intron (ENSMUSG00000006191.17, intron 8 of 15) -173383 ENSMUSG00000006191.17 ENSMUSG00000006191 ENSMUST00000129231 Cdkal1 protein_coding Interval_72467 chr17 29993522 29993872 + 0 NA Intergenic Intergenic -9556 ENSMUSG00000089524.1 ENSMUSG00000089524 ENSMUST00000158899 Gm22327 snoRNA Interval_145755 chr7 38067257 38067749 + 0 NA intron (ENSMUSG00000108334.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000108334.1, intron 1 of 1) -5803 ENSMUSG00000108726.1 ENSMUSG00000108726 ENSMUST00000205632 Gm30684 lincRNA Interval_117208 chr4 120589361 120590395 + 0 NA intron (ENSMUSG00000091297.2, intron 1 of 2) protein_coding-intron (ENSMUSG00000091297.2, intron 1 of 2) 1132 ENSMUSG00000091297.2 ENSMUSG00000091297 ENSMUST00000238451 Gm8439 protein_coding Interval_149383 chr7 97971819 97973334 + 0 NA intron (ENSMUSG00000035582.13, intron 6 of 16) protein_coding-intron (ENSMUSG00000035582.13, intron 7 of 17) 14755 ENSMUSG00000035582.13 ENSMUSG00000035582 ENSMUST00000170049 Gdpd4 protein_coding Interval_158944 chr8 88160827 88162042 + 0 NA promoter-TSS (ENSMUSG00000031657.16) protein_coding-promoter-TSS (ENSMUSG00000031657.16) -84 ENSMUSG00000031657.16 ENSMUSG00000031657 ENSMUST00000137452 Heatr3 protein_coding Interval_161974 chr8 124206395 124206671 + 0 NA intron (ENSMUSG00000092329.1, intron 1 of 15) protein_coding-intron (ENSMUSG00000092329.1, intron 1 of 15) 46460 ENSMUSG00000110482.1 ENSMUSG00000110482 ENSMUST00000212467 Gm3889 processed_pseudogene Interval_152429 chr7 132996561 132997069 + 0 NA intron (ENSMUSG00000030970.16, intron 6 of 6) protein_coding-intron (ENSMUSG00000030970.16, intron 5 of 10) -13263 ENSMUSG00000085663.1 ENSMUSG00000085663 ENSMUST00000131085 Gm15718 antisense Interval_14461 chr10 34036203 34037009 + 0 NA promoter-TSS (ENSMUSG00000071340.2) protein_coding-promoter-TSS (ENSMUSG00000071340.2) 7691 ENSMUSG00000039508.6 ENSMUSG00000039508 ENSMUST00000218239 Calhm4 protein_coding Interval_71710 chr17 25612050 25613568 + 0 NA intron (ENSMUSG00000002279.19, intron 4 of 6) protein_coding-intron (ENSMUSG00000002279.19, intron 4 of 10) 33489 ENSMUSG00000002279.19 ENSMUSG00000002279 ENSMUST00000156868 Lmf1 protein_coding Interval_49440 chr13 112002941 112003158 + 0 NA Intergenic Intergenic -2453 ENSMUSG00000086092.1 ENSMUSG00000086092 ENSMUST00000156109 Gm15323 lincRNA Interval_147911 chr7 75482096 75483177 + 0 NA exon (ENSMUSG00000108542.1, exon 1 of 1) TEC-exon (ENSMUSG00000108542.1, exon 1 of 1) 637 ENSMUSG00000108542.1 ENSMUSG00000108542 ENSMUST00000206671 Gm44834 TEC Interval_58771 chr15 37987705 37988205 + 0 NA TTS (ENSMUSG00000037487.7) protein_coding-TTS (ENSMUSG00000037487.7) -17340 ENSMUSG00000037487.7 ENSMUSG00000037487 ENSMUST00000227143 Ubr5 protein_coding Interval_83526 chr18 88855197 88855503 + 0 NA intron (ENSMUSG00000056153.15, intron 3 of 3) protein_coding-intron (ENSMUSG00000056153.15, intron 2 of 7) -22873 ENSMUSG00000117948.1 ENSMUSG00000117948 ENSMUST00000237769 Gm6409 processed_pseudogene Interval_104651 chr3 69125922 69127620 + 0 NA promoter-TSS (ENSMUSG00000027782.10) protein_coding-promoter-TSS (ENSMUSG00000027782.10) 321 ENSMUSG00000027782.10 ENSMUSG00000027782 ENSMUST00000127497 Kpna4 protein_coding Interval_71276 chr17 21831159 21831429 + 0 NA intron (ENSMUSG00000069743.5, intron 2 of 4) protein_coding-intron (ENSMUSG00000069743.5, intron 2 of 4) 14478 ENSMUSG00000069743.5 ENSMUSG00000069743 ENSMUST00000232918 Zfp820 protein_coding Interval_120692 chr4 150136495 150137160 + 0 NA intron (ENSMUSG00000028976.10, intron 2 of 4) protein_coding-intron (ENSMUSG00000028976.10, intron 7 of 13) -2726 ENSMUSG00000028976.10 ENSMUSG00000028976 ENSMUST00000151504 Slc2a5 protein_coding Interval_67349 chr16 46998846 46999070 + 0 NA Intergenic Intergenic -75240 ENSMUSG00000081624.1 ENSMUSG00000081624 ENSMUST00000117218 Gm6912 processed_pseudogene Interval_91267 chr2 37117975 37118352 + 0 NA promoter-TSS (ENSMUSG00000075377.2) protein_coding-promoter-TSS (ENSMUSG00000075377.2) -253 ENSMUSG00000075377.2 ENSMUSG00000075377 ENSMUST00000215927 Olfr362 protein_coding Interval_86145 chr19 37050613 37051114 + 0 NA intron (ENSMUSG00000039652.16, intron 9 of 10) protein_coding-intron (ENSMUSG00000039652.16, intron 9 of 10) 90678 ENSMUSG00000040565.8 ENSMUSG00000040565 ENSMUST00000236343 Btaf1 protein_coding Interval_16516 chr10 63310173 63310696 + 0 NA intron (ENSMUSG00000020064.9, intron 20 of 25) protein_coding-intron (ENSMUSG00000020064.9, intron 19 of 24) -14641 ENSMUSG00000096991.1 ENSMUSG00000096991 ENSMUST00000181342 Gm26789 antisense Interval_63983 chr16 4993928 4994114 + 0 NA intron (ENSMUSG00000022542.7, intron 2 of 6) protein_coding-intron (ENSMUSG00000022542.7, intron 2 of 7) 3742 ENSMUSG00000022542.7 ENSMUSG00000022542 ENSMUST00000230878 Septin12 protein_coding Interval_165301 chr9 46126888 46128014 + 0 NA intron (ENSMUSG00000034135.15, intron 3 of 24) protein_coding-intron (ENSMUSG00000034135.15, intron 3 of 22) 4321 ENSMUSG00000034135.15 ENSMUSG00000034135 ENSMUST00000138338 Sik3 protein_coding Interval_3046 chr1 52638951 52639390 + 0 NA intron (ENSMUSG00000043015.15, intron 2 of 3) protein_coding-intron (ENSMUSG00000043015.15, intron 2 of 8) -6011 ENSMUSG00000043015.15 ENSMUSG00000043015 ENSMUST00000191076 Nemp2 protein_coding Interval_59801 chr15 59386382 59386868 + 0 NA intron (ENSMUSG00000059586.10, intron 2 of 7) protein_coding-intron (ENSMUSG00000059586.10, intron 2 of 6) 12340 ENSMUSG00000059586.10 ENSMUSG00000059586 ENSMUST00000079703 Nsmce2 protein_coding Interval_18294 chr10 84658597 84659175 + 0 NA intron (ENSMUSG00000034453.8, intron 6 of 6) protein_coding-intron (ENSMUSG00000034453.8, intron 12 of 27) 20752 ENSMUSG00000034453.8 ENSMUSG00000034453 ENSMUST00000213543 Polr3b protein_coding Interval_75378 chr17 66244149 66244994 + 0 NA Intergenic Intergenic -8202 ENSMUSG00000117220.1 ENSMUSG00000117220 ENSMUST00000233452 Gm49932 lincRNA Interval_52909 chr14 52006430 52006832 + 0 NA TTS (ENSMUSG00000004562.16) protein_coding-TTS (ENSMUSG00000004562.16) 2143 ENSMUSG00000004562.16 ENSMUSG00000004562 ENSMUST00000182504 Arhgef40 protein_coding Interval_168762 chr9 86755351 86756375 + 0 NA exon (ENSMUSG00000033491.13, exon 2 of 2) protein_coding-exon (ENSMUSG00000033491.13, exon 2 of 2) 12214 ENSMUSG00000033491.13 ENSMUSG00000033491 ENSMUST00000036426 Prss35 protein_coding Interval_88848 chr2 11620641 11620920 + 0 NA Intergenic Intergenic 5484 ENSMUSG00000091312.1 ENSMUSG00000091312 ENSMUST00000166779 Gm17490 protein_coding Interval_152913 chr7 139695207 139695887 + 0 NA Intergenic Intergenic -23852 ENSMUSG00000056777.5 ENSMUSG00000056777 ENSMUST00000072532 Rpl21-ps13 processed_pseudogene Interval_124275 chr5 43354836 43356190 + 0 NA promoter-TSS (ENSMUSG00000104846.1) lincRNA-promoter-TSS (ENSMUSG00000104846.1) -254 ENSMUSG00000104846.1 ENSMUSG00000104846 ENSMUST00000197178 Gm43020 lincRNA Interval_164983 chr9 43628378 43629278 + 0 NA Intergenic Intergenic 16329 ENSMUSG00000111400.1 ENSMUSG00000111400 ENSMUST00000214692 Gm29961 lincRNA Interval_2529 chr1 39970517 39970837 + 0 NA intron (ENSMUSG00000026074.15, intron 1 of 2) protein_coding-intron (ENSMUSG00000026074.15, intron 3 of 30) 69498 ENSMUSG00000026074.15 ENSMUSG00000026074 ENSMUST00000191657 Map4k4 protein_coding Interval_162635 chr9 7050453 7051360 + 0 NA intron (ENSMUSG00000047193.16, intron 61 of 89) protein_coding-intron (ENSMUSG00000047193.16, intron 61 of 88) 66682 ENSMUSG00000047193.16 ENSMUSG00000047193 ENSMUST00000139115 Dync2h1 protein_coding Interval_152471 chr7 133192909 133193166 + 0 NA Intergenic Intergenic 64786 ENSMUSG00000109816.1 ENSMUSG00000109816 ENSMUST00000209850 4930483O08Rik lincRNA Interval_172813 chrX 50572230 50573104 + 0 NA intron (ENSMUSG00000085396.7, intron 17 of 19) processed_transcript-intron (ENSMUSG00000085396.7, intron 4 of 6) -7784 ENSMUSG00000085396.7 ENSMUSG00000085396 ENSMUST00000148530 Firre processed_transcript Interval_2320 chr1 38022911 38023153 + 0 NA intron (ENSMUSG00000026083.12, intron 6 of 21) protein_coding-intron (ENSMUSG00000026083.12, intron 6 of 23) -21602 ENSMUSG00000026083.12 ENSMUSG00000026083 ENSMUST00000195664 Eif5b protein_coding Interval_30241 chr11 91576733 91578597 + 0 NA promoter-TSS (ENSMUSG00000046755.5) protein_coding-promoter-TSS (ENSMUSG00000046755.5) -107 ENSMUSG00000046755.5 ENSMUSG00000046755 ENSMUST00000061019 Kif2b protein_coding Interval_14109 chr10 27537602 27537802 + 0 NA intron (ENSMUSG00000019899.17, intron 1 of 1) protein_coding-intron (ENSMUSG00000019899.17, intron 1 of 64) 77626 ENSMUSG00000103931.1 ENSMUSG00000103931 ENSMUST00000192114 Gm36962 TEC Interval_15307 chr10 44390380 44392543 + 0 NA Intergenic Intergenic 31785 ENSMUSG00000089260.1 ENSMUSG00000089260 ENSMUST00000158635 Mir1929 miRNA Interval_77282 chr17 87759447 87759695 + 0 NA intron (ENSMUSG00000050138.8, intron 1 of 1) protein_coding-intron (ENSMUSG00000050138.8, intron 1 of 1) 38423 ENSMUSG00000050138.8 ENSMUSG00000050138 ENSMUST00000055221 Kcnk12 protein_coding Interval_77391 chr17 88385407 88385643 + 0 NA intron (ENSMUSG00000117351.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000117351.1, intron 1 of 1) 3174 ENSMUSG00000117351.1 ENSMUSG00000117351 ENSMUST00000234514 Gm31615 lincRNA Interval_9586 chr1 159812539 159814835 + 0 NA intron (ENSMUSG00000015829.13, intron 1 of 1) protein_coding-intron (ENSMUSG00000015829.13, intron 1 of 21) 118039 ENSMUSG00000103719.1 ENSMUSG00000103719 ENSMUST00000195328 Gm38039 antisense Interval_18853 chr10 91295264 91295758 + 0 NA Intergenic Intergenic -14834 ENSMUSG00000111525.1 ENSMUSG00000111525 ENSMUST00000214371 Gm47082 lincRNA Interval_152376 chr7 132558969 132559700 + 0 NA intron (ENSMUSG00000030934.9, intron 9 of 9) protein_coding-intron (ENSMUSG00000030934.9, intron 9 of 9) 16384 ENSMUSG00000030934.9 ENSMUSG00000030934 ENSMUST00000211545 Oat protein_coding Interval_39362 chr12 86911631 86912985 + 0 NA Intergenic Intergenic -27510 ENSMUSG00000034168.7 ENSMUSG00000034168 ENSMUST00000038422 Irf2bpl protein_coding Interval_105496 chr3 87033079 87034832 + 0 NA Intergenic Intergenic -10072 ENSMUSG00000104265.1 ENSMUSG00000104265 ENSMUST00000195222 Gm8869 processed_pseudogene Interval_101593 chr3 7465355 7465602 + 0 NA Intergenic Intergenic 10957 ENSMUSG00000102268.1 ENSMUSG00000102268 ENSMUST00000193161 Gm8826 processed_pseudogene Interval_69105 chr16 90701227 90702076 + 0 NA Intergenic Intergenic -24651 ENSMUSG00000116582.1 ENSMUSG00000116582 ENSMUST00000232154 Gm36169 lincRNA Interval_42512 chr13 14303097 14303969 + 0 NA intron (ENSMUSG00000021301.9, intron 5 of 17) protein_coding-intron (ENSMUSG00000021301.9, intron 13 of 28) 76040 ENSMUSG00000113981.1 ENSMUSG00000113981 ENSMUST00000222578 Gm47011 TEC Interval_140476 chr6 118576588 118576846 + 0 NA Intergenic Intergenic 42507 ENSMUSG00000100867.1 ENSMUSG00000100867 ENSMUST00000185373 Gm18981 processed_pseudogene Interval_170681 chr9 110076240 110076841 + 0 NA intron (ENSMUSG00000032479.15, intron 4 of 6) protein_coding-intron (ENSMUSG00000032479.15, intron 15 of 18) -1509 ENSMUSG00000032479.15 ENSMUSG00000032479 ENSMUST00000199985 Map4 protein_coding Interval_135748 chr6 46576938 46577665 + 0 NA intron (ENSMUSG00000039419.17, intron 13 of 23) protein_coding-intron (ENSMUSG00000039419.17, intron 13 of 23) -46507 ENSMUSG00000079575.3 ENSMUSG00000079575 ENSMUST00000182751 Rbpj-ps3 processed_pseudogene Interval_68796 chr16 86818075 86818587 + 0 NA intron (ENSMUSG00000116810.1, intron 1 of 3) lincRNA-intron (ENSMUSG00000116810.1, intron 1 of 3) 1457 ENSMUSG00000116810.1 ENSMUSG00000116810 ENSMUST00000231758 Gm32624 lincRNA Interval_166018 chr9 55511544 55512842 + 0 NA promoter-TSS (ENSMUSG00000032314.14) protein_coding-promoter-TSS (ENSMUSG00000032314.14) -73 ENSMUSG00000032314.14 ENSMUSG00000032314 ENSMUST00000142587 Etfa protein_coding Interval_64292 chr16 10280441 10280708 + 0 NA Intergenic Intergenic 6824 ENSMUSG00000093251.1 ENSMUSG00000093251 ENSMUST00000175510 Gm22932 miRNA Interval_111090 chr4 11914376 11915188 + 0 NA Intergenic Intergenic -13642 ENSMUSG00000084518.1 ENSMUSG00000084518 ENSMUST00000122569 Gm22477 misc_RNA Interval_38521 chr12 79845297 79845625 + 0 NA Intergenic Intergenic 80033 ENSMUSG00000112765.1 ENSMUSG00000112765 ENSMUST00000219857 9430078K24Rik lincRNA Interval_87733 chr19 55507691 55507910 + 0 NA intron (ENSMUSG00000024983.10, intron 8 of 8) protein_coding-intron (ENSMUSG00000024983.10, intron 7 of 7) 191473 ENSMUSG00000024983.10 ENSMUSG00000024983 ENSMUST00000224396 Vti1a protein_coding Interval_8646 chr1 146004129 146004655 + 0 NA Intergenic Intergenic -416044 ENSMUSG00000090323.2 ENSMUSG00000090323 ENSMUST00000163646 Gm5263 processed_pseudogene Interval_86017 chr19 34948711 34948970 + 0 NA intron (ENSMUSG00000024795.11, intron 10 of 23) protein_coding-intron (ENSMUSG00000024795.11, intron 18 of 31) -16556 ENSMUSG00000089151.1 ENSMUSG00000089151 ENSMUST00000158526 Mir1950 miRNA Interval_95918 chr2 118388139 118389158 + 0 NA promoter-TSS (ENSMUSG00000005102.13) protein_coding-promoter-TSS (ENSMUSG00000005102.13) -15229 ENSMUSG00000040133.2 ENSMUSG00000040133 ENSMUST00000039160 Gpr176 protein_coding Interval_43466 chr13 31612204 31612445 + 0 NA intron (ENSMUSG00000038408.14, intron 1 of 3) lincRNA-intron (ENSMUSG00000038408.14, intron 1 of 3) -6844 ENSMUSG00000087276.1 ENSMUSG00000087276 ENSMUST00000130966 Gm11378 lincRNA Interval_50263 chr14 11534564 11534800 + 0 NA Intergenic Intergenic -13912 ENSMUSG00000114849.1 ENSMUSG00000114849 ENSMUST00000224543 Gm48595 lincRNA Interval_166048 chr9 56072572 56073617 + 0 NA Intergenic Intergenic -16882 ENSMUSG00000032322.14 ENSMUSG00000032322 ENSMUST00000132800 Pstpip1 protein_coding Interval_46191 chr13 62390155 62390842 + 0 NA Intergenic Intergenic -2565 ENSMUSG00000113865.1 ENSMUSG00000113865 ENSMUST00000221812 Selenok-ps6 processed_pseudogene Interval_85873 chr19 32593660 32596317 + 0 NA promoter-TSS (ENSMUSG00000024899.7) protein_coding-promoter-TSS (ENSMUSG00000024899.7) -25017 ENSMUSG00000024899.7 ENSMUSG00000024899 ENSMUST00000025833 Papss2 protein_coding Interval_43429 chr13 30744541 30744782 + 0 NA Intergenic Intergenic -4646 ENSMUSG00000021356.10 ENSMUSG00000021356 ENSMUST00000222125 Irf4 protein_coding Interval_34620 chr12 8063663 8064290 + 0 NA intron (ENSMUSG00000112694.1, intron 2 of 3) antisense-intron (ENSMUSG00000112694.1, intron 2 of 3) 86328 ENSMUSG00000020609.14 ENSMUSG00000020609 ENSMUST00000171239 Apob protein_coding Interval_151218 chr7 119793504 119794637 + 0 NA promoter-TSS (ENSMUSG00000030924.16) protein_coding-promoter-TSS (ENSMUSG00000030924.16) -12 ENSMUSG00000030929.17 ENSMUSG00000030929 ENSMUST00000133926 Eri2 protein_coding Interval_89873 chr2 26138514 26138704 + 0 NA promoter-TSS (ENSMUSG00000087595.1) lincRNA-promoter-TSS (ENSMUSG00000087595.1) 63 ENSMUSG00000087595.1 ENSMUSG00000087595 ENSMUST00000155199 1810012K08Rik lincRNA Interval_57776 chr15 19550644 19550968 + 0 NA Intergenic Intergenic -94454 ENSMUSG00000115516.1 ENSMUSG00000115516 ENSMUST00000226898 Gm8341 processed_pseudogene Interval_83933 chr19 5695771 5696738 + 0 NA TTS (ENSMUSG00000004054.9) protein_coding-TTS (ENSMUSG00000004054.9) -6244 ENSMUSG00000118077.1 ENSMUSG00000118077 ENSMUST00000237906 Gm50315 antisense Interval_140657 chr6 120342234 120342827 + 0 NA intron (ENSMUSG00000030177.14, intron 4 of 8) protein_coding-intron (ENSMUSG00000030177.14, intron 4 of 11) 14837 ENSMUSG00000030177.14 ENSMUSG00000030177 ENSMUST00000153435 Ccdc77 protein_coding Interval_139218 chr6 97252510 97253282 + 0 NA promoter-TSS (ENSMUSG00000044086.8) protein_coding-promoter-TSS (ENSMUSG00000044086.8) -137 ENSMUSG00000044086.8 ENSMUSG00000044086 ENSMUST00000095655 Lmod3 protein_coding Interval_53541 chr14 58648602 58649609 + 0 NA Intergenic Intergenic 1295 ENSMUSG00000077201.1 ENSMUSG00000077201 ENSMUST00000104013 Gm25614 snoRNA Interval_31923 chr11 103885920 103886785 + 0 NA intron (ENSMUSG00000034187.18, intron 8 of 8) protein_coding-intron (ENSMUSG00000034187.18, intron 8 of 20) -6109 ENSMUSG00000092540.1 ENSMUSG00000092540 ENSMUST00000172606 Gm8738 processed_pseudogene Interval_115496 chr4 99473305 99473596 + 0 NA Intergenic Intergenic -42196 ENSMUSG00000081150.1 ENSMUSG00000081150 ENSMUST00000118675 Gm12684 processed_pseudogene Interval_152097 chr7 129279432 129279700 + 0 NA intron (ENSMUSG00000070366.5, intron 1 of 4) protein_coding-intron (ENSMUSG00000070366.5, intron 1 of 6) 22519 ENSMUSG00000070366.5 ENSMUSG00000070366 ENSMUST00000205896 Plpp4 protein_coding Interval_158304 chr8 80975416 80975850 + 0 NA Intergenic Intergenic -36966 ENSMUSG00000098001.1 ENSMUSG00000098001 ENSMUST00000182891 Gm27048 lincRNA Interval_92355 chr2 59217720 59218442 + 0 NA intron (ENSMUSG00000026991.20, intron 2 of 4) protein_coding-intron (ENSMUSG00000026991.20, intron 2 of 21) 56154 ENSMUSG00000026991.20 ENSMUSG00000026991 ENSMUST00000124127 Pkp4 protein_coding Interval_10364 chr1 169988376 169988631 + 0 NA exon (ENSMUSG00000026674.9, exon 13 of 18) protein_coding-exon (ENSMUSG00000026674.9, exon 13 of 18) 19051 ENSMUSG00000097503.2 ENSMUSG00000097503 ENSMUST00000193930 3110045C21Rik antisense Interval_16639 chr10 66746154 66746355 + 0 NA Intergenic Intergenic -5095 ENSMUSG00000112159.1 ENSMUSG00000112159 ENSMUST00000219914 Gm18777 processed_pseudogene Interval_124531 chr5 50057882 50059484 + 0 NA promoter-TSS (ENSMUSG00000029090.12) protein_coding-promoter-TSS (ENSMUSG00000029090.12) -38 ENSMUSG00000029090.12 ENSMUSG00000029090 ENSMUST00000199132 Adgra3 protein_coding Interval_113519 chr4 55480115 55481291 + 0 NA Intergenic Intergenic -11544 ENSMUSG00000077635.1 ENSMUSG00000077635 ENSMUST00000104447 Gm22150 snoRNA Interval_83633 chr19 3350409 3350701 + 0 NA exon (ENSMUSG00000024900.5, exon 2 of 2) protein_coding-exon (ENSMUSG00000024900.5, exon 2 of 2) -25789 ENSMUSG00000024900.5 ENSMUSG00000024900 ENSMUST00000238027 Cpt1a protein_coding Interval_10593 chr1 172103204 172103435 + 0 NA intron (ENSMUSG00000026553.17, intron 3 of 6) protein_coding-intron (ENSMUSG00000026553.17, intron 10 of 32) 3583 ENSMUSG00000026553.17 ENSMUSG00000026553 ENSMUST00000142765 Copa protein_coding Interval_94018 chr2 80742384 80742691 + 0 NA Intergenic Intergenic 34948 ENSMUSG00000077404.1 ENSMUSG00000077404 ENSMUST00000104216 Gm25420 snoRNA Interval_114437 chr4 76728390 76728932 + 0 NA intron (ENSMUSG00000028399.18, intron 9 of 9) protein_coding-intron (ENSMUSG00000028399.18, intron 9 of 14) 36518 ENSMUSG00000083050.1 ENSMUSG00000083050 ENSMUST00000120103 Gm11242 processed_pseudogene Interval_140022 chr6 113471235 113472357 + 0 NA promoter-TSS (ENSMUSG00000030281.16) protein_coding-promoter-TSS (ENSMUSG00000030281.16) -998 ENSMUSG00000030281.16 ENSMUSG00000030281 ENSMUST00000203668 Il17rc protein_coding Interval_28319 chr11 75172766 75173923 + 0 NA promoter-TSS (ENSMUSG00000065537.2) miRNA-promoter-TSS (ENSMUSG00000065537.2) -44 ENSMUSG00000065590.1 ENSMUSG00000065590 ENSMUST00000083656 Mir212 miRNA Interval_98841 chr2 155482006 155482549 + 0 NA Intergenic Intergenic 4092 ENSMUSG00000083341.1 ENSMUSG00000083341 ENSMUST00000120227 Gm14238 processed_pseudogene Interval_105934 chr3 90157091 90157325 + 0 NA intron (ENSMUSG00000027939.11, intron 15 of 39) protein_coding-intron (ENSMUSG00000027939.11, intron 15 of 39) 30441 ENSMUSG00000104649.1 ENSMUSG00000104649 ENSMUST00000198020 Gm43712 unprocessed_pseudogene Interval_159323 chr8 93531903 93532195 + 0 NA intron (ENSMUSG00000058019.13, intron 2 of 5) protein_coding-intron (ENSMUSG00000058019.13, intron 2 of 12) 3781 ENSMUSG00000058019.13 ENSMUSG00000058019 ENSMUST00000212722 Ces5a protein_coding Interval_93218 chr2 71227632 71227845 + 0 NA intron (ENSMUSG00000027012.15, intron 3 of 3) protein_coding-intron (ENSMUSG00000027012.15, intron 3 of 15) 15734 ENSMUSG00000027012.15 ENSMUSG00000027012 ENSMUST00000138613 Dync1i2 protein_coding Interval_170345 chr9 107307442 107307740 + 0 NA Intergenic Intergenic -5753 ENSMUSG00000090570.1 ENSMUSG00000090570 ENSMUST00000163196 Gm17041 antisense Interval_129899 chr5 122983863 122984722 + 0 NA intron (ENSMUSG00000029475.17, intron 2 of 12) protein_coding-intron (ENSMUSG00000029475.17, intron 3 of 22) -5062 ENSMUSG00000056735.5 ENSMUSG00000056735 ENSMUST00000148466 A930024E05Rik antisense Interval_166725 chr9 62287104 62287501 + 0 NA Intergenic Intergenic -5094 ENSMUSG00000046846.4 ENSMUSG00000046846 ENSMUST00000056949 Spesp1 protein_coding Interval_11408 chr1 181769515 181769838 + 0 NA TTS (ENSMUSG00000047369.17) protein_coding-TTS (ENSMUSG00000047369.17) 44024 ENSMUSG00000064970.1 ENSMUSG00000064970 ENSMUST00000083036 Gm23690 snRNA Interval_154583 chr8 21132465 21133504 + 0 NA Intergenic Intergenic -1658 ENSMUSG00000074444.4 ENSMUSG00000074444 ENSMUST00000098898 Defa30 protein_coding Interval_49376 chr13 111549912 111551090 + 0 NA promoter-TSS (ENSMUSG00000085634.2) lincRNA-promoter-TSS (ENSMUSG00000085634.2) -554 ENSMUSG00000116016.1 ENSMUSG00000116016 ENSMUST00000231096 Gm49496 protein_coding Interval_64639 chr16 13828994 13829730 + 0 NA intron (ENSMUSG00000022681.15, intron 3 of 5) protein_coding-intron (ENSMUSG00000022681.15, intron 5 of 9) 10130 ENSMUSG00000099314.1 ENSMUSG00000099314 ENSMUST00000183701 Gm27734 miRNA Interval_57785 chr15 19934062 19934456 + 0 NA Intergenic Intergenic 84606 ENSMUSG00000115830.1 ENSMUSG00000115830 ENSMUST00000226614 Gm49176 processed_pseudogene Interval_146419 chr7 45783554 45784051 + 0 NA promoter-TSS (ENSMUSG00000062044.16) protein_coding-promoter-TSS (ENSMUSG00000062044.16) 665 ENSMUSG00000003271.17 ENSMUSG00000003271 ENSMUST00000211779 Sult2b1 protein_coding Interval_94533 chr2 91983824 91984831 + 0 NA intron (ENSMUSG00000027230.9, intron 10 of 11) protein_coding-intron (ENSMUSG00000027230.9, intron 10 of 11) -18727 ENSMUSG00000040479.12 ENSMUSG00000040479 ENSMUST00000126473 Dgkz protein_coding Interval_75890 chr17 72805106 72805302 + 0 NA Intergenic Intergenic -32332 ENSMUSG00000039770.6 ENSMUSG00000039770 ENSMUST00000233662 Ypel5 protein_coding Interval_144396 chr7 24902868 24903234 + 0 NA promoter-TSS (ENSMUSG00000040940.18) protein_coding-promoter-TSS (ENSMUSG00000040940.18) -1305 ENSMUSG00000040940.18 ENSMUSG00000040940 ENSMUST00000132786 Arhgef1 protein_coding Interval_11727 chr1 184915653 184915935 + 0 NA intron (ENSMUSG00000026620.11, intron 10 of 17) protein_coding-intron (ENSMUSG00000026620.11, intron 10 of 17) -7342 ENSMUSG00000102784.1 ENSMUSG00000102784 ENSMUST00000192968 Gm38251 antisense Interval_110596 chr4 4425980 4427544 + 0 NA Intergenic Intergenic 101957 ENSMUSG00000085155.3 ENSMUSG00000085155 ENSMUST00000136880 Gm11780 processed_pseudogene Interval_117606 chr4 124985828 124987218 + 0 NA promoter-TSS (ENSMUSG00000028871.7) protein_coding-promoter-TSS (ENSMUSG00000028871.7) 486 ENSMUSG00000087011.1 ENSMUSG00000087011 ENSMUST00000146679 Gm12930 antisense Interval_36492 chr12 46251885 46252733 + 0 NA Intergenic Intergenic 21575 ENSMUSG00000112915.1 ENSMUSG00000112915 ENSMUST00000219862 Gm18112 unprocessed_pseudogene Interval_58526 chr15 35618871 35620088 + 0 NA intron (ENSMUSG00000037646.10, intron 24 of 28) protein_coding-intron (ENSMUSG00000037646.10, intron 24 of 61) 30165 ENSMUSG00000115144.1 ENSMUSG00000115144 ENSMUST00000228376 Gm7968 TEC Interval_174149 chrX 136537767 136538023 + 0 NA intron (ENSMUSG00000057439.12, intron 1 of 10) protein_coding-intron (ENSMUSG00000057439.12, intron 1 of 10) 6161 ENSMUSG00000057439.12 ENSMUSG00000057439 ENSMUST00000113108 Kir3dl2 protein_coding Interval_8811 chr1 151338211 151339167 + 0 NA TTS (ENSMUSG00000100954.4) antisense-TTS (ENSMUSG00000100954.4) 6047 ENSMUSG00000100954.4 ENSMUSG00000100954 ENSMUST00000206952 Gm10138 antisense Interval_2217 chr1 37108043 37108682 + 0 NA intron (ENSMUSG00000050122.19, intron 1 of 4) protein_coding-intron (ENSMUSG00000050122.19, intron 8 of 24) 24902 ENSMUSG00000103603.1 ENSMUSG00000103603 ENSMUST00000195303 Gm37020 antisense Interval_171767 chr9 120902217 120903114 + 0 NA Intergenic Intergenic 12587 ENSMUSG00000100146.1 ENSMUSG00000100146 ENSMUST00000188320 1700020M21Rik lincRNA Interval_131361 chr5 136708424 136709234 + 0 NA Intergenic Intergenic 11050 ENSMUSG00000005474.9 ENSMUSG00000005474 ENSMUST00000197849 Myl10 protein_coding Interval_95097 chr2 103841998 103842965 + 0 NA TTS (ENSMUSG00000076233.1) miRNA-TTS (ENSMUSG00000076233.1) 1032 ENSMUSG00000076233.1 ENSMUSG00000076233 ENSMUST00000102278 Gm22761 miRNA Interval_59101 chr15 43775234 43775566 + 0 NA Intergenic Intergenic -33061 ENSMUSG00000115407.1 ENSMUSG00000115407 ENSMUST00000226778 Gm2140 processed_pseudogene Interval_8565 chr1 142742153 142742746 + 0 NA Intergenic Intergenic -12744 ENSMUSG00000102818.1 ENSMUSG00000102818 ENSMUST00000195327 Gm37796 TEC Interval_126509 chr5 89386314 89386554 + 0 NA Intergenic Intergenic 49194 ENSMUSG00000035540.12 ENSMUSG00000035540 ENSMUST00000200534 Gc protein_coding Interval_117171 chr4 120211944 120212858 + 0 NA Intergenic Intergenic 51195 ENSMUSG00000028635.7 ENSMUSG00000028635 ENSMUST00000030384 Edn2 protein_coding Interval_145631 chr7 36457911 36458206 + 0 NA Intergenic Intergenic 27447 ENSMUSG00000093216.1 ENSMUSG00000093216 ENSMUST00000175475 Gm25247 miRNA Interval_74167 chr17 46873090 46873568 + 0 NA Intergenic Intergenic -17355 ENSMUSG00000036430.8 ENSMUSG00000036430 ENSMUST00000040434 Tbcc protein_coding Interval_38823 chr12 82946397 82946726 + 0 NA intron (ENSMUSG00000021219.16, intron 2 of 16) protein_coding-intron (ENSMUSG00000021219.16, intron 1 of 14) -7406 ENSMUSG00000100890.1 ENSMUSG00000100890 ENSMUST00000187123 1700085C21Rik antisense Interval_94113 chr2 84387575 84389538 + 0 NA intron (ENSMUSG00000059588.13, intron 1 of 3) protein_coding-intron (ENSMUSG00000059588.13, intron 2 of 15) 36710 ENSMUSG00000059588.13 ENSMUSG00000059588 ENSMUST00000151295 Calcrl protein_coding Interval_5773 chr1 91707806 91708203 + 0 NA Intergenic Intergenic -93466 ENSMUSG00000007805.4 ENSMUSG00000007805 ENSMUST00000186075 Twist2 protein_coding Interval_84436 chr19 10904993 10905813 + 0 NA exon (ENSMUSG00000024735.13, exon 16 of 16) protein_coding-exon (ENSMUSG00000024735.13, exon 16 of 16) 5121 ENSMUSG00000024735.13 ENSMUSG00000024735 ENSMUST00000191552 Prpf19 protein_coding Interval_171378 chr9 117177202 117177401 + 0 NA intron (ENSMUSG00000039607.17, intron 1 of 13) protein_coding-intron (ENSMUSG00000039607.17, intron 1 of 12) -75235 ENSMUSG00000079669.2 ENSMUSG00000079669 ENSMUST00000172075 Gm17396 processed_transcript Interval_34666 chr12 8498106 8500669 + 0 NA exon (ENSMUSG00000054364.5, exon 1 of 1) protein_coding-exon (ENSMUSG00000054364.5, exon 1 of 1) 622 ENSMUSG00000054364.5 ENSMUSG00000054364 ENSMUST00000067384 Rhob protein_coding Interval_147329 chr7 65885379 65886331 + 0 NA intron (ENSMUSG00000030513.14, intron 1 of 19) protein_coding-intron (ENSMUSG00000030513.14, intron 1 of 21) -23863 ENSMUSG00000093405.1 ENSMUSG00000093405 ENSMUST00000176744 Gm20684 bidirectional_promoter_lncRNA Interval_105830 chr3 89578153 89579296 + 0 NA intron (ENSMUSG00000000794.9, intron 2 of 7) protein_coding-intron (ENSMUSG00000000794.9, intron 2 of 7) -83794 ENSMUSG00000000794.9 ENSMUSG00000000794 ENSMUST00000124584 Kcnn3 protein_coding Interval_156070 chr8 43393205 43393894 + 0 NA Intergenic Intergenic 15574 ENSMUSG00000084702.1 ENSMUSG00000084702 ENSMUST00000122753 Gm22986 snoRNA Interval_24945 chr11 41826050 41826948 + 0 NA intron (ENSMUSG00000087306.7, intron 3 of 8) processed_transcript-intron (ENSMUSG00000087306.7, intron 3 of 8) -36680 ENSMUSG00000084293.1 ENSMUSG00000084293 ENSMUST00000119666 Gm12143 processed_pseudogene Interval_58557 chr15 36062953 36063153 + 0 NA intron (ENSMUSG00000037627.16, intron 14 of 27) protein_coding-intron (ENSMUSG00000037627.16, intron 3 of 6) -22374 ENSMUSG00000037627.16 ENSMUSG00000037627 ENSMUST00000164955 Rgs22 protein_coding Interval_11857 chr1 186400961 186401272 + 0 NA Intergenic Intergenic 53801 ENSMUSG00000102217.1 ENSMUSG00000102217 ENSMUST00000192552 Gm37491 TEC Interval_7803 chr1 133798383 133798606 + 0 NA intron (ENSMUSG00000026463.17, intron 1 of 2) protein_coding-intron (ENSMUSG00000026463.17, intron 1 of 2) -20073 ENSMUSG00000102509.1 ENSMUSG00000102509 ENSMUST00000193173 Gm37368 TEC Interval_77136 chr17 86789181 86789449 + 0 NA intron (ENSMUSG00000024140.10, intron 1 of 15) protein_coding-intron (ENSMUSG00000024140.10, intron 1 of 15) 16045 ENSMUSG00000117538.1 ENSMUSG00000117538 ENSMUST00000234482 Gm50008 TEC Interval_82815 chr18 77168811 77169049 + 0 NA Intergenic Intergenic 17433 ENSMUSG00000073532.3 ENSMUSG00000073532 ENSMUST00000097520 Gm7276 bidirectional_promoter_lncRNA Interval_41136 chr12 111425175 111426566 + 0 NA TTS (ENSMUSG00000021280.9) protein_coding-TTS (ENSMUSG00000021280.9) 5076 ENSMUSG00000097081.1 ENSMUSG00000097081 ENSMUST00000181085 Gm10425 antisense Interval_130897 chr5 133718587 133719290 + 0 NA Intergenic Intergenic -120532 ENSMUSG00000105227.1 ENSMUSG00000105227 ENSMUST00000196125 Gm36667 lincRNA Interval_15864 chr10 58536132 58536695 + 0 NA intron (ENSMUSG00000038010.9, intron 10 of 15) protein_coding-intron (ENSMUSG00000038010.9, intron 10 of 15) -18854 ENSMUSG00000112670.1 ENSMUSG00000112670 ENSMUST00000219887 Gm18042 processed_pseudogene Interval_170377 chr9 107553740 107555338 + 0 NA promoter-TSS (ENSMUSG00000010067.13) protein_coding-promoter-TSS (ENSMUSG00000010067.13) -837 ENSMUSG00000010067.13 ENSMUSG00000010067 ENSMUST00000129320 Rassf1 protein_coding Interval_51428 chr14 27434653 27434940 + 0 NA intron (ENSMUSG00000040651.9, intron 1 of 23) protein_coding-intron (ENSMUSG00000040651.9, intron 1 of 23) -42374 ENSMUSG00000040651.9 ENSMUSG00000040651 ENSMUST00000225139 Tasor protein_coding Interval_27546 chr11 68594346 68595081 + 0 NA intron (ENSMUSG00000045915.15, intron 6 of 6) protein_coding-intron (ENSMUSG00000045915.15, intron 5 of 5) 7692 ENSMUSG00000045915.15 ENSMUSG00000045915 ENSMUST00000102612 Ccdc42 protein_coding Interval_81265 chr18 56942072 56943063 + 0 NA Intergenic Intergenic -17052 ENSMUSG00000032656.14 ENSMUSG00000032656 ENSMUST00000153044 Marchf3 protein_coding Interval_10770 chr1 174521014 174523304 + 0 NA intron (ENSMUSG00000028354.13, intron 1 of 17) protein_coding-intron (ENSMUSG00000028354.13, intron 1 of 17) 80077 ENSMUSG00000066671.4 ENSMUSG00000066671 ENSMUST00000085861 Olfr220 protein_coding Interval_12732 chr10 4571151 4571533 + 0 NA Intergenic Intergenic -1119 ENSMUSG00000112330.1 ENSMUSG00000112330 ENSMUST00000217832 Gm3266 processed_pseudogene Interval_94443 chr2 91264537 91265703 + 0 NA promoter-TSS (ENSMUSG00000027255.14) protein_coding-promoter-TSS (ENSMUSG00000027255.14) -214 ENSMUSG00000027255.14 ENSMUSG00000027255 ENSMUST00000127895 Arfgap2 protein_coding Interval_105796 chr3 89373249 89374632 + 0 NA intron (ENSMUSG00000109293.1, intron 15 of 15) protein_coding-intron (ENSMUSG00000109293.1, intron 15 of 15) 11965 ENSMUSG00000109293.1 ENSMUSG00000109293 ENSMUST00000208216 Dcst2 protein_coding Interval_128742 chr5 115032327 115032837 + 0 NA intron (ENSMUSG00000029550.11, intron 2 of 2) protein_coding-intron (ENSMUSG00000029550.11, intron 1 of 10) -7188 ENSMUSG00000107054.1 ENSMUSG00000107054 ENSMUST00000201944 C730045M19Rik TEC Interval_101079 chr2 177188890 177189144 + 0 NA intron (ENSMUSG00000078870.9, intron 2 of 2) protein_coding-intron (ENSMUSG00000078870.9, intron 2 of 2) 6744 ENSMUSG00000078870.9 ENSMUSG00000078870 ENSMUST00000108964 Gm14410 protein_coding Interval_104029 chr3 57515026 57516366 + 0 NA intron (ENSMUSG00000027803.14, intron 2 of 6) protein_coding-intron (ENSMUSG00000027803.14, intron 2 of 6) -12536 ENSMUSG00000083538.1 ENSMUSG00000083538 ENSMUST00000120831 Gm16016 processed_pseudogene Interval_15471 chr10 47770114 47770376 + 0 NA Intergenic Intergenic 130122 ENSMUSG00000112702.1 ENSMUSG00000112702 ENSMUST00000217715 Gm47571 TEC Interval_84596 chr19 14099789 14099980 + 0 NA Intergenic Intergenic -81513 ENSMUSG00000098074.1 ENSMUSG00000098074 ENSMUST00000182766 Gm26993 processed_pseudogene Interval_20277 chr10 116618523 116618816 + 0 NA Intergenic Intergenic -13157 ENSMUSG00000111937.1 ENSMUSG00000111937 ENSMUST00000218130 Gm46203 processed_pseudogene Interval_9042 chr1 153254416 153254859 + 0 NA intron (ENSMUSG00000026478.14, intron 4 of 27) protein_coding-intron (ENSMUSG00000026478.14, intron 4 of 27) -15311 ENSMUSG00000026478.14 ENSMUSG00000026478 ENSMUST00000159251 Lamc1 protein_coding Interval_155835 chr8 39905907 39906264 + 0 NA Intergenic Intergenic -110629 ENSMUSG00000109815.1 ENSMUSG00000109815 ENSMUST00000209880 Gm7082 processed_pseudogene Interval_122099 chr5 16995798 16996122 + 0 NA Intergenic Intergenic 14924 ENSMUSG00000105706.1 ENSMUSG00000105706 ENSMUST00000197388 Gm42855 processed_pseudogene Interval_32065 chr11 104979686 104980454 + 0 NA intron (ENSMUSG00000040838.10, intron 127 of 187) protein_coding-intron (ENSMUSG00000040838.10, intron 127 of 187) -51087 ENSMUSG00000082767.1 ENSMUSG00000082767 ENSMUST00000120525 Gm11622 processed_pseudogene Interval_148842 chr7 89230951 89231902 + 0 NA intron (ENSMUSG00000039428.11, intron 3 of 5) protein_coding-intron (ENSMUSG00000039428.11, intron 5 of 14) -14329 ENSMUSG00000109576.1 ENSMUSG00000109576 ENSMUST00000208963 Gm44704 TEC Interval_156753 chr8 57904848 57905129 + 0 NA intron (ENSMUSG00000096914.3, intron 7 of 12) protein_coding-intron (ENSMUSG00000096914.3, intron 2 of 7) 13245 ENSMUSG00000109753.1 ENSMUSG00000109753 ENSMUST00000210669 Gm45633 TEC Interval_146898 chr7 55632164 55632757 + 0 NA Intergenic Intergenic -3993 ENSMUSG00000108363.1 ENSMUSG00000108363 ENSMUST00000206548 Gm44615 processed_pseudogene Interval_32021 chr11 104510493 104511646 + 0 NA intron (ENSMUSG00000020687.13, intron 1 of 2) protein_coding-intron (ENSMUSG00000020687.13, intron 15 of 18) 19456 ENSMUSG00000083782.1 ENSMUSG00000083782 ENSMUST00000120955 Gm11660 processed_pseudogene Interval_138494 chr6 88651727 88652620 + 0 NA Intergenic Intergenic -33651 ENSMUSG00000033182.12 ENSMUSG00000033182 ENSMUST00000184664 Kbtbd12 protein_coding Interval_9101 chr1 153590290 153591383 + 0 NA Intergenic Intergenic 29837 ENSMUSG00000099858.1 ENSMUSG00000099858 ENSMUST00000186414 Gm6652 processed_pseudogene Interval_2374 chr1 38756101 38756361 + 0 NA Intergenic Intergenic -10953 ENSMUSG00000103531.1 ENSMUSG00000103531 ENSMUST00000192930 2610300A13Rik TEC Interval_133441 chr6 5043583 5043775 + 0 NA intron (ENSMUSG00000032827.15, intron 1 of 17) protein_coding-intron (ENSMUSG00000032827.15, intron 2 of 15) 84696 ENSMUSG00000097396.1 ENSMUSG00000097396 ENSMUST00000180645 Gm26556 TEC Interval_45958 chr13 59654043 59654230 + 0 NA intron (ENSMUSG00000021556.12, intron 3 of 5) protein_coding-intron (ENSMUSG00000021556.12, intron 3 of 9) 21636 ENSMUSG00000021556.12 ENSMUSG00000021556 ENSMUST00000224160 Golm1 protein_coding Interval_79842 chr18 35532305 35533339 + 0 NA Intergenic Intergenic -3761 ENSMUSG00000062742.4 ENSMUSG00000062742 ENSMUST00000081864 Gm5239 processed_pseudogene Interval_2771 chr1 44584927 44585118 + 0 NA intron (ENSMUSG00000056870.9, intron 2 of 3) protein_coding-intron (ENSMUSG00000056870.9, intron 1 of 10) 24137 ENSMUSG00000102319.1 ENSMUSG00000102319 ENSMUST00000194332 Gm37626 TEC Interval_26555 chr11 58801682 58802554 + 0 NA promoter-TSS (ENSMUSG00000049154.12) protein_coding-promoter-TSS (ENSMUSG00000049154.12) -158 ENSMUSG00000049154.12 ENSMUSG00000049154 ENSMUST00000060581 Fam183b protein_coding Interval_72030 chr17 27644746 27644942 + 0 NA Intergenic Intergenic 9501 ENSMUSG00000087387.2 ENSMUSG00000087387 ENSMUST00000133274 Gm15420 antisense Interval_24627 chr11 35415743 35416806 + 0 NA intron (ENSMUSG00000056427.10, intron 2 of 3) protein_coding-intron (ENSMUSG00000056427.10, intron 4 of 35) 66205 ENSMUSG00000086311.1 ENSMUSG00000086311 ENSMUST00000124503 Gm12122 sense_intronic Interval_97180 chr2 132067803 132068157 + 0 NA promoter-TSS (ENSMUSG00000027340.15) protein_coding-promoter-TSS (ENSMUSG00000027340.15) 10028 ENSMUSG00000027340.15 ENSMUSG00000027340 ENSMUST00000128899 Slc23a2 protein_coding Interval_112082 chr4 34556994 34557452 + 0 NA intron (ENSMUSG00000028291.7, intron 1 of 1) protein_coding-intron (ENSMUSG00000028291.7, intron 1 of 4) 6272 ENSMUSG00000028291.7 ENSMUSG00000028291 ENSMUST00000132230 Akirin2 protein_coding Interval_53799 chr14 61904111 61904688 + 0 NA Intergenic Intergenic -16977 ENSMUSG00000114706.1 ENSMUSG00000114706 ENSMUST00000224682 Gm47952 processed_pseudogene Interval_115565 chr4 100827191 100828024 + 0 NA intron (ENSMUSG00000028532.14, intron 1 of 26) protein_coding-intron (ENSMUSG00000028532.14, intron 1 of 26) -167103 ENSMUSG00000028532.14 ENSMUSG00000028532 ENSMUST00000136430 Cachd1 protein_coding Interval_97375 chr2 135569319 135569526 + 0 NA intron (ENSMUSG00000085631.1, intron 1 of 1) antisense-intron (ENSMUSG00000085631.1, intron 1 of 1) 14162 ENSMUSG00000085631.1 ENSMUSG00000085631 ENSMUST00000129868 9630028H03Rik antisense Interval_11659 chr1 184065849 184066083 + 0 NA intron (ENSMUSG00000039384.8, intron 2 of 3) protein_coding-intron (ENSMUSG00000039384.8, intron 2 of 3) -31665 ENSMUSG00000044854.7 ENSMUSG00000044854 ENSMUST00000050306 1700056E22Rik protein_coding Interval_119734 chr4 139594101 139594414 + 0 NA intron (ENSMUSG00000041025.15, intron 1 of 8) protein_coding-intron (ENSMUSG00000041025.15, intron 3 of 10) -5280 ENSMUSG00000094359.1 ENSMUSG00000094359 ENSMUST00000178322 Gm25571 miRNA Interval_158678 chr8 85101976 85102925 + 0 NA Intergenic Intergenic 9618 ENSMUSG00000089213.1 ENSMUSG00000089213 ENSMUST00000158588 Gm23388 miRNA Interval_74325 chr17 48971204 48971952 + 0 NA intron (ENSMUSG00000040490.4, intron 1 of 2) protein_coding-intron (ENSMUSG00000040490.4, intron 1 of 2) 39199 ENSMUSG00000040490.4 ENSMUSG00000040490 ENSMUST00000046254 Lrfn2 protein_coding Interval_56180 chr14 111116291 111117311 + 0 NA Intergenic Intergenic -165245 ENSMUSG00000093362.1 ENSMUSG00000093362 ENSMUST00000175621 Gm22802 miRNA Interval_37974 chr12 73534746 73535039 + 0 NA Intergenic Intergenic 11500 ENSMUSG00000034435.6 ENSMUSG00000034435 ENSMUST00000042975 Tmem30b protein_coding Interval_72768 chr17 32044896 32045478 + 0 NA intron (ENSMUSG00000058392.13, intron 1 of 11) protein_coding-intron (ENSMUSG00000058392.13, intron 1 of 15) 8777 ENSMUSG00000058392.13 ENSMUSG00000058392 ENSMUST00000126602 Rrp1b protein_coding Interval_26238 chr11 55358139 55358790 + 0 NA Intergenic Intergenic -46207 ENSMUSG00000055333.14 ENSMUSG00000055333 ENSMUST00000108864 Fat2 protein_coding Interval_80584 chr18 44426733 44428013 + 0 NA exon (ENSMUSG00000071856.10, exon 19 of 19) protein_coding-exon (ENSMUSG00000071856.10, exon 19 of 19) 46871 ENSMUSG00000024472.9 ENSMUSG00000024472 ENSMUST00000025350 Dcp2 protein_coding Interval_73259 chr17 35832969 35833800 + 0 NA TTS (ENSMUSG00000001525.10) protein_coding-TTS (ENSMUSG00000001525.10) 2746 ENSMUSG00000059714.13 ENSMUSG00000059714 ENSMUST00000174297 Flot1 protein_coding Interval_105614 chr3 88129100 88129654 + 0 NA Intergenic Intergenic -38875 ENSMUSG00000001419.17 ENSMUSG00000001419 ENSMUST00000152861 Mef2d protein_coding Interval_84543 chr19 12548381 12549485 + 0 NA intron (ENSMUSG00000024691.13, intron 1 of 4) protein_coding-intron (ENSMUSG00000024691.13, intron 1 of 4) -8110 ENSMUSG00000114761.1 ENSMUSG00000114761 ENSMUST00000224027 Gm47242 lincRNA Interval_12978 chr10 8872193 8872400 + 0 NA intron (ENSMUSG00000015305.6, intron 1 of 3) protein_coding-intron (ENSMUSG00000015305.6, intron 1 of 19) -10853 ENSMUSG00000111165.1 ENSMUSG00000111165 ENSMUST00000214016 4930553I21Rik TEC Interval_22109 chr11 6395078 6395365 + 0 NA promoter-TSS (ENSMUSG00000041164.15) protein_coding-promoter-TSS (ENSMUSG00000041164.15) -1508 ENSMUSG00000041164.15 ENSMUSG00000041164 ENSMUST00000124588 Zmiz2 protein_coding Interval_132543 chr5 146186340 146188329 + 0 NA Intergenic Intergenic -3039 ENSMUSG00000095040.2 ENSMUSG00000095040 ENSMUST00000188052 1700001J03Rik protein_coding Interval_167866 chr9 73157578 73159066 + 0 NA Intergenic Intergenic 17419 ENSMUSG00000066478.3 ENSMUSG00000066478 ENSMUST00000183748 Gm5745 processed_pseudogene Interval_61558 chr15 82322650 82322979 + 0 NA Intergenic Intergenic 9871 ENSMUSG00000022453.8 ENSMUSG00000022453 ENSMUST00000230269 Naga protein_coding Interval_95805 chr2 116735777 116736651 + 0 NA Intergenic Intergenic 140954 ENSMUSG00000086462.1 ENSMUSG00000086462 ENSMUST00000151391 Gm13990 antisense Interval_70081 chr17 5164947 5165666 + 0 NA intron (ENSMUSG00000069729.14, intron 4 of 19) protein_coding-intron (ENSMUSG00000069729.14, intron 4 of 18) -53196 ENSMUSG00000081783.2 ENSMUSG00000081783 ENSMUST00000122283 Gm15599 processed_pseudogene Interval_128991 chr5 116489487 116490248 + 0 NA intron (ENSMUSG00000063919.11, intron 1 of 12) protein_coding-intron (ENSMUSG00000063919.11, intron 1 of 12) 12849 ENSMUSG00000107172.1 ENSMUSG00000107172 ENSMUST00000200924 4933430H06Rik TEC Interval_126788 chr5 92934792 92935932 + 0 NA intron (ENSMUSG00000029381.16, intron 3 of 9) protein_coding-intron (ENSMUSG00000029381.16, intron 3 of 9) -68469 ENSMUSG00000106930.1 ENSMUSG00000106930 ENSMUST00000200896 Gm6450 processed_pseudogene Interval_101820 chr3 9704845 9705539 + 0 NA promoter-TSS (ENSMUSG00000027508.15) protein_coding-promoter-TSS (ENSMUSG00000027508.15) 48672 ENSMUSG00000103876.1 ENSMUSG00000103876 ENSMUST00000195844 Gm17806 processed_pseudogene Interval_98466 chr2 152615573 152615992 + 0 NA Intergenic Intergenic 6608 ENSMUSG00000089684.1 ENSMUSG00000089684 ENSMUST00000117342 Gm14163 processed_pseudogene Interval_49549 chr13 112868881 112869536 + 0 NA intron (ENSMUSG00000016018.4, intron 25 of 26) protein_coding-intron (ENSMUSG00000016018.4, intron 25 of 26) -15018 ENSMUSG00000098067.1 ENSMUSG00000098067 ENSMUST00000182295 Gm26943 processed_pseudogene Interval_146284 chr7 45123958 45125539 + 0 NA promoter-TSS (ENSMUSG00000003429.11) protein_coding-promoter-TSS (ENSMUSG00000003429.11) -413 ENSMUSG00000003429.11 ENSMUSG00000003429 ENSMUST00000211583 Rps11 protein_coding Interval_128704 chr5 114818065 114819043 + 0 NA intron (ENSMUSG00000072694.8, intron 1 of 1) protein_coding-intron (ENSMUSG00000072694.8, intron 1 of 1) 4914 ENSMUSG00000072694.8 ENSMUSG00000072694 ENSMUST00000100850 1500011B03Rik protein_coding Interval_33479 chr11 116798237 116799175 + 0 NA Intergenic Intergenic -23199 ENSMUSG00000009588.9 ENSMUSG00000009588 ENSMUST00000009732 St6galnac1 protein_coding Interval_46650 chr13 68076189 68076694 + 0 NA Intergenic Intergenic -15833 ENSMUSG00000113365.1 ENSMUSG00000113365 ENSMUST00000222859 Gm48424 unprocessed_pseudogene Interval_145847 chr7 40337037 40337559 + 0 NA Intergenic Intergenic -26152 ENSMUSG00000087914.1 ENSMUSG00000087914 ENSMUST00000157289 Gm24910 misc_RNA Interval_94758 chr2 94040281 94041798 + 0 NA intron (ENSMUSG00000027195.10, intron 6 of 7) protein_coding-intron (ENSMUSG00000027195.10, intron 9 of 10) 25725 ENSMUSG00000027195.10 ENSMUSG00000027195 ENSMUST00000141955 Hsd17b12 protein_coding Interval_80674 chr18 46198071 46199785 + 0 NA promoter-TSS (ENSMUSG00000033949.12) protein_coding-promoter-TSS (ENSMUSG00000033949.12) -93 ENSMUSG00000103616.1 ENSMUSG00000103616 ENSMUST00000195587 1700018A14Rik TEC Interval_10713 chr1 173420376 173420791 + 0 NA promoter-TSS (ENSMUSG00000037860.15) protein_coding-promoter-TSS (ENSMUSG00000037860.15) -34771 ENSMUSG00000037860.15 ENSMUSG00000037860 ENSMUST00000135370 Aim2 protein_coding Interval_156867 chr8 61316540 61317685 + 0 NA intron (ENSMUSG00000031642.9, intron 2 of 10) protein_coding-intron (ENSMUSG00000031642.9, intron 2 of 11) -28240 ENSMUSG00000099419.1 ENSMUSG00000099419 ENSMUST00000188654 1700001D01Rik antisense Interval_57647 chr15 13172681 13174138 + 0 NA intron (ENSMUSG00000039385.5, intron 1 of 3) protein_coding-intron (ENSMUSG00000039385.5, intron 1 of 11) 266 ENSMUSG00000039385.5 ENSMUSG00000039385 ENSMUST00000226917 Cdh6 protein_coding Interval_58761 chr15 37905465 37906728 + 0 NA Intergenic Intergenic -6380 ENSMUSG00000115326.1 ENSMUSG00000115326 ENSMUST00000226812 Gm35019 lincRNA Interval_3854 chr1 63730074 63731302 + 0 NA promoter-TSS (ENSMUSG00000025962.15) protein_coding-promoter-TSS (ENSMUSG00000025962.15) 47 ENSMUSG00000025962.15 ENSMUSG00000025962 ENSMUST00000134454 Fastkd2 protein_coding Interval_117775 chr4 126171345 126172280 + 0 NA exon (ENSMUSG00000043962.16, exon 8 of 11) protein_coding-exon (ENSMUSG00000043962.16, exon 8 of 11) 8335 ENSMUSG00000043962.16 ENSMUSG00000043962 ENSMUST00000124327 Thrap3 protein_coding Interval_119602 chr4 138676091 138676796 + 0 NA Intergenic Intergenic 48778 ENSMUSG00000043621.13 ENSMUSG00000043621 ENSMUST00000135156 Ubxn10 protein_coding Interval_170895 chr9 111724710 111726046 + 0 NA Intergenic Intergenic -35049 ENSMUSG00000032502.8 ENSMUSG00000032502 ENSMUST00000162345 Stac protein_coding Interval_174582 chrX 159459082 159459478 + 0 NA exon (ENSMUSG00000041020.14, exon 1 of 13) protein_coding-exon (ENSMUSG00000041020.14, exon 1 of 13) 143 ENSMUSG00000041020.14 ENSMUSG00000041020 ENSMUST00000156172 Map7d2 protein_coding Interval_167371 chr9 67878062 67878691 + 0 NA intron (ENSMUSG00000035284.10, intron 11 of 26) protein_coding-intron (ENSMUSG00000035284.10, intron 11 of 84) 37964 ENSMUSG00000035284.10 ENSMUSG00000035284 ENSMUST00000215524 Vps13c protein_coding Interval_90868 chr2 33081924 33082425 + 0 NA intron (ENSMUSG00000038860.15, intron 1 of 17) protein_coding-intron (ENSMUSG00000038860.15, intron 1 of 27) -47390 ENSMUSG00000038860.15 ENSMUSG00000038860 ENSMUST00000124000 Garnl3 protein_coding Interval_119778 chr4 139925384 139926389 + 0 NA TTS (ENSMUSG00000085928.1) lincRNA-TTS (ENSMUSG00000085928.1) 2537 ENSMUSG00000087628.1 ENSMUSG00000087628 ENSMUST00000128563 Gm13028 lincRNA Interval_34409 chr12 3909709 3909922 + 0 NA exon (ENSMUSG00000020661.15, exon 23 of 23) protein_coding-exon (ENSMUSG00000020661.15, exon 23 of 23) 22225 ENSMUSG00000112271.1 ENSMUSG00000112271 ENSMUST00000220237 Gm9088 processed_pseudogene Interval_47735 chr13 92024045 92024435 + 0 NA intron (ENSMUSG00000021708.17, intron 7 of 9) protein_coding-intron (ENSMUSG00000021708.17, intron 7 of 33) 107416 ENSMUSG00000021708.17 ENSMUSG00000021708 ENSMUST00000146492 Rasgrf2 protein_coding Interval_108806 chr3 131607587 131608057 + 0 NA intron (ENSMUSG00000028032.13, intron 12 of 14) protein_coding-intron (ENSMUSG00000028032.13, intron 9 of 11) 5958 ENSMUSG00000105973.1 ENSMUSG00000105973 ENSMUST00000198636 Gm42881 TEC Interval_70879 chr17 15536189 15536876 + 0 NA exon (ENSMUSG00000116949.1, exon 1 of 1) processed_pseudogene-exon (ENSMUSG00000116949.1, exon 1 of 1) 172 ENSMUSG00000116949.1 ENSMUSG00000116949 ENSMUST00000232517 Gm7177 processed_pseudogene Interval_172138 chrX 7919499 7920357 + 0 NA exon (ENSMUSG00000039278.10, exon 1 of 3) protein_coding-exon (ENSMUSG00000039278.10, exon 1 of 3) 106 ENSMUSG00000039278.10 ENSMUSG00000039278 ENSMUST00000041096 Pcsk1n protein_coding Interval_48521 chr13 99748721 99748972 + 0 NA Intergenic Intergenic -56317 ENSMUSG00000077673.1 ENSMUSG00000077673 ENSMUST00000104485 Gm24471 snoRNA Interval_158220 chr8 80005334 80005975 + 0 NA intron (ENSMUSG00000064325.4, intron 4 of 12) protein_coding-intron (ENSMUSG00000064325.4, intron 4 of 12) -15305 ENSMUSG00000064325.4 ENSMUSG00000064325 ENSMUST00000079038 Hhip protein_coding Interval_146977 chr7 56807079 56807593 + 0 NA intron (ENSMUSG00000055026.13, intron 5 of 9) protein_coding-intron (ENSMUSG00000055026.13, intron 5 of 9) -1873 ENSMUSG00000108647.1 ENSMUSG00000108647 ENSMUST00000205286 Gm17984 processed_pseudogene Interval_28955 chr11 79551096 79551435 + 0 NA intron (ENSMUSG00000020716.16, intron 10 of 17) protein_coding-intron (ENSMUSG00000020716.16, intron 47 of 57) -20656 ENSMUSG00000078771.10 ENSMUSG00000078771 ENSMUST00000133148 Evi2a protein_coding Interval_89902 chr2 26351789 26353038 + 0 NA promoter-TSS (ENSMUSG00000075467.4) protein_coding-promoter-TSS (ENSMUSG00000075467.4) -313 ENSMUSG00000075467.4 ENSMUSG00000075467 ENSMUST00000028295 Dnlz protein_coding Interval_65263 chr16 21062804 21063038 + 0 NA exon (ENSMUSG00000116710.1, exon 1 of 1) unprocessed_pseudogene-exon (ENSMUSG00000116710.1, exon 1 of 1) 173 ENSMUSG00000116710.1 ENSMUSG00000116710 ENSMUST00000232295 Gm6557 unprocessed_pseudogene Interval_59458 chr15 53298819 53299667 + 0 NA intron (ENSMUSG00000061731.9, intron 1 of 10) protein_coding-intron (ENSMUSG00000061731.9, intron 1 of 10) -84676 ENSMUSG00000087805.2 ENSMUSG00000087805 ENSMUST00000157180 Gm27926 snRNA Interval_146230 chr7 44860503 44861005 + 0 NA promoter-TSS (ENSMUSG00000002963.17) protein_coding-promoter-TSS (ENSMUSG00000002963.17) 2258 ENSMUSG00000002963.17 ENSMUSG00000002963 ENSMUST00000144669 Pnkp protein_coding Interval_98238 chr2 150318601 150319210 + 0 NA intron (ENSMUSG00000095315.2, intron 1 of 3) protein_coding-intron (ENSMUSG00000063364.10, intron 3 of 3) 7474 ENSMUSG00000095315.2 ENSMUSG00000095315 ENSMUST00000133235 Gm10130 protein_coding Interval_94680 chr2 93278520 93278954 + 0 NA intron (ENSMUSG00000027217.13, intron 2 of 9) protein_coding-intron (ENSMUSG00000027217.13, intron 2 of 9) 33778 ENSMUSG00000027217.13 ENSMUSG00000027217 ENSMUST00000152141 Tspan18 protein_coding Interval_77278 chr17 87724272 87725288 + 0 NA Intergenic Intergenic 28239 ENSMUSG00000024151.13 ENSMUSG00000024151 ENSMUST00000174703 Msh2 protein_coding Interval_116710 chr4 116768474 116769827 + 0 NA intron (ENSMUSG00000033985.17, intron 4 of 10) protein_coding-intron (ENSMUSG00000033985.17, intron 3 of 10) -2613 ENSMUSG00000033985.17 ENSMUSG00000033985 ENSMUST00000142529 Tesk2 protein_coding Interval_37392 chr12 66342136 66342344 + 0 NA intron (ENSMUSG00000114093.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000114093.1, intron 1 of 2) 26145 ENSMUSG00000114093.1 ENSMUSG00000114093 ENSMUST00000221562 Gm47979 lincRNA Interval_55231 chr14 79515538 79516622 + 0 NA intron (ENSMUSG00000036461.16, intron 1 of 7) protein_coding-intron (ENSMUSG00000036461.16, intron 1 of 8) 394 ENSMUSG00000036461.16 ENSMUSG00000036461 ENSMUST00000227104 Elf1 protein_coding Interval_110121 chr3 153475314 153476414 + 0 NA intron (ENSMUSG00000104908.1, intron 1 of 2) protein_coding-intron (ENSMUSG00000052544.9, intron 1 of 2) -1210 ENSMUSG00000104964.1 ENSMUSG00000104964 ENSMUST00000196286 4930597L12Rik TEC Interval_143585 chr7 12977520 12978675 + 0 NA promoter-TSS (ENSMUSG00000033961.16) protein_coding-promoter-TSS (ENSMUSG00000033961.16) 204 ENSMUSG00000033961.16 ENSMUSG00000033961 ENSMUST00000128427 Zfp446 protein_coding Interval_106359 chr3 95632633 95633707 + 0 NA Intergenic Intergenic -6134 ENSMUSG00000106383.1 ENSMUSG00000106383 ENSMUST00000200640 E330034L11Rik TEC Interval_79436 chr18 31883224 31883460 + 0 NA exon (ENSMUSG00000024400.16, exon 1 of 2) protein_coding-exon (ENSMUSG00000024400.16, exon 1 of 2) 28482 ENSMUSG00000044982.7 ENSMUSG00000044982 ENSMUST00000054984 Sft2d3 protein_coding Interval_162566 chr9 4455806 4456187 + 0 NA promoter-TSS (ENSMUSG00000092896.2) miRNA-promoter-TSS (ENSMUSG00000092896.2) 27 ENSMUSG00000092896.2 ENSMUSG00000092896 ENSMUST00000175155 Gm23811 miRNA Interval_75784 chr17 71342511 71343479 + 0 NA Intergenic Intergenic -1229 ENSMUSG00000117199.1 ENSMUSG00000117199 ENSMUST00000232737 Gm4566 lincRNA Interval_82221 chr18 69362694 69363039 + 0 NA intron (ENSMUSG00000053477.17, intron 1 of 6) protein_coding-intron (ENSMUSG00000053477.17, intron 3 of 20) 106578 ENSMUSG00000098060.1 ENSMUSG00000098060 ENSMUST00000183237 Gm4842 processed_pseudogene Interval_21276 chr10 127609429 127610726 + 0 NA intron (ENSMUSG00000040249.15, intron 3 of 14) protein_coding-intron (ENSMUSG00000040249.15, intron 3 of 88) 13529 ENSMUSG00000086499.1 ENSMUSG00000086499 ENSMUST00000124182 Gm16217 antisense Interval_132003 chr5 142179239 142180162 + 0 NA intron (ENSMUSG00000039683.16, intron 40 of 44) protein_coding-intron (ENSMUSG00000039683.16, intron 36 of 40) -103406 ENSMUSG00000097947.1 ENSMUSG00000097947 ENSMUST00000182990 Gm26970 processed_pseudogene Interval_61518 chr15 82138483 82139431 + 0 NA intron (ENSMUSG00000068114.7, intron 6 of 6) protein_coding-intron (ENSMUSG00000068114.7, intron 6 of 6) -8289 ENSMUSG00000022463.8 ENSMUSG00000022463 ENSMUST00000230955 Srebf2 protein_coding Interval_1687 chr1 31150395 31151119 + 0 NA TTS (ENSMUSG00000100910.1) antisense-TTS (ENSMUSG00000100910.1) -13792 ENSMUSG00000099796.1 ENSMUSG00000099796 ENSMUST00000189666 Gm7893 processed_pseudogene Interval_35901 chr12 31744533 31744897 + 0 NA intron (ENSMUSG00000035933.5, intron 6 of 22) protein_coding-intron (ENSMUSG00000035933.5, intron 6 of 22) -2610 ENSMUSG00000112033.1 ENSMUSG00000112033 ENSMUST00000218894 Gm48808 processed_pseudogene Interval_80037 chr18 36801339 36802145 + 0 NA promoter-TSS (ENSMUSG00000065145.1) misc_RNA-promoter-TSS (ENSMUSG00000065145.1) -124 ENSMUSG00000065145.1 ENSMUSG00000065145 ENSMUST00000083211 Vaultrc5 misc_RNA Interval_53851 chr14 62755343 62755976 + 0 NA intron (ENSMUSG00000035161.7, intron 3 of 4) protein_coding-intron (ENSMUSG00000035161.7, intron 3 of 18) -24038 ENSMUSG00000115371.1 ENSMUSG00000115371 ENSMUST00000226895 Gm18146 processed_pseudogene Interval_114636 chr4 83341378 83344460 + 0 NA Intergenic Intergenic -40145 ENSMUSG00000087592.1 ENSMUSG00000087592 ENSMUST00000126437 Gm11184 lincRNA Interval_73369 chr17 36823830 36824588 + 0 NA Intergenic Intergenic 12038 ENSMUSG00000037130.4 ENSMUSG00000037130 ENSMUST00000041398 H2-M10.6 protein_coding Interval_157691 chr8 72318642 72320243 + 0 NA exon (ENSMUSG00000055148.7, exon 2 of 3) protein_coding-exon (ENSMUSG00000055148.7, exon 2 of 3) 409 ENSMUSG00000055148.7 ENSMUSG00000055148 ENSMUST00000067912 Klf2 protein_coding Interval_11098 chr1 179352550 179352769 + 0 NA intron (ENSMUSG00000055067.15, intron 5 of 11) protein_coding-intron (ENSMUSG00000055067.15, intron 5 of 11) 165346 ENSMUSG00000055067.15 ENSMUSG00000055067 ENSMUST00000194237 Smyd3 protein_coding Interval_106617 chr3 97811107 97812299 + 0 NA intron (ENSMUSG00000038170.15, intron 1 of 1) protein_coding-intron (ENSMUSG00000038170.15, intron 4 of 46) 12918 ENSMUSG00000038170.15 ENSMUSG00000038170 ENSMUST00000163531 Pde4dip protein_coding Interval_120570 chr4 149436560 149437241 + 0 NA Intergenic Intergenic -10915 ENSMUSG00000028960.20 ENSMUSG00000028960 ENSMUST00000131986 Ube4b protein_coding Interval_154953 chr8 25245724 25246103 + 0 NA intron (ENSMUSG00000065954.11, intron 1 of 4) protein_coding-intron (ENSMUSG00000065954.11, intron 1 of 2) -44464 ENSMUSG00000065954.11 ENSMUSG00000065954 ENSMUST00000211218 Tacc1 protein_coding Interval_71681 chr17 25392116 25392577 + 0 NA TTS (ENSMUSG00000024112.16) protein_coding-TTS (ENSMUSG00000024112.16) -2874 ENSMUSG00000024112.16 ENSMUSG00000024112 ENSMUST00000159052 Cacna1h protein_coding Interval_6811 chr1 119744019 119745030 + 0 NA intron (ENSMUSG00000026384.13, intron 5 of 5) protein_coding-intron (ENSMUSG00000026384.13, intron 8 of 26) -28531 ENSMUSG00000026384.13 ENSMUSG00000026384 ENSMUST00000163621 Ptpn4 protein_coding Interval_50216 chr14 10285029 10285309 + 0 NA intron (ENSMUSG00000060579.13, intron 1 of 5) protein_coding-intron (ENSMUSG00000060579.13, intron 5 of 9) 94779 ENSMUSG00000114749.1 ENSMUSG00000114749 ENSMUST00000223594 Gm48442 TEC Interval_159487 chr8 95025394 95025704 + 0 NA intron (ENSMUSG00000060470.7, intron 1 of 3) protein_coding-intron (ENSMUSG00000060470.7, intron 2 of 11) 4755 ENSMUSG00000060470.7 ENSMUSG00000060470 ENSMUST00000212570 Adgrg3 protein_coding Interval_140299 chr6 116253891 116254118 + 0 NA intron (ENSMUSG00000024104.11, intron 22 of 24) protein_coding-intron (ENSMUSG00000024104.11, intron 23 of 30) -1802 ENSMUSG00000024104.11 ENSMUSG00000024104 ENSMUST00000203980 Washc2 protein_coding Interval_32444 chr11 107570685 107571424 + 0 NA intron (ENSMUSG00000020721.16, intron 3 of 4) protein_coding-intron (ENSMUSG00000020721.16, intron 2 of 31) -22681 ENSMUSG00000059706.4 ENSMUSG00000059706 ENSMUST00000147445 A830035A12Rik processed_transcript Interval_39882 chr12 99349490 99349885 + 0 NA intron (ENSMUSG00000033731.9, intron 2 of 3) protein_coding-intron (ENSMUSG00000033713.12, intron 2 of 5) 8533 ENSMUSG00000033731.9 ENSMUSG00000033731 ENSMUST00000046994 3300002A11Rik antisense Interval_118767 chr4 133609814 133610602 + 0 NA intron (ENSMUSG00000037553.14, intron 2 of 2) protein_coding-intron (ENSMUSG00000037553.14, intron 7 of 7) -8040 ENSMUSG00000047281.3 ENSMUSG00000047281 ENSMUST00000057311 Sfn protein_coding Interval_33615 chr11 117525327 117526328 + 0 NA intron (ENSMUSG00000085419.1, intron 2 of 4) lincRNA-intron (ENSMUSG00000085419.1, intron 2 of 4) 2224 ENSMUSG00000085419.1 ENSMUSG00000085419 ENSMUST00000132261 Gm11734 lincRNA Interval_132986 chr5 149110724 149111023 + 0 NA intron (ENSMUSG00000066551.12, intron 2 of 5) protein_coding-intron (ENSMUSG00000066551.12, intron 2 of 5) 12539 ENSMUSG00000097191.2 ENSMUSG00000097191 ENSMUST00000200718 Mm2pr lincRNA Interval_128880 chr5 115840956 115841888 + 0 NA Intergenic Intergenic -28722 ENSMUSG00000106869.1 ENSMUSG00000106869 ENSMUST00000201056 Gm42473 TEC Interval_106628 chr3 97915086 97915474 + 0 NA TTS (ENSMUSG00000027879.9) protein_coding-TTS (ENSMUSG00000027879.9) 8326 ENSMUSG00000027879.9 ENSMUSG00000027879 ENSMUST00000199738 Sec22b protein_coding Interval_168458 chr9 81041507 81042165 + 0 NA intron (ENSMUSG00000097655.3, intron 1 of 3) lincRNA-intron (ENSMUSG00000097655.3, intron 1 of 3) -24878 ENSMUSG00000099085.1 ENSMUSG00000099085 ENSMUST00000184817 Gm8151 processed_pseudogene Interval_148802 chr7 88074121 88074570 + 0 NA exon (ENSMUSG00000049583.15, exon 7 of 8) protein_coding-exon (ENSMUSG00000049583.15, exon 7 of 8) -8468 ENSMUSG00000108890.1 ENSMUSG00000108890 ENSMUST00000207104 Gm44847 TEC Interval_158347 chr8 82268118 82268512 + 0 NA Intergenic Intergenic -60929 ENSMUSG00000110045.1 ENSMUSG00000110045 ENSMUST00000209515 Gm38590 lincRNA Interval_168578 chr9 83720491 83720800 + 0 NA Intergenic Intergenic 29170 ENSMUSG00000100155.1 ENSMUSG00000100155 ENSMUST00000189326 Gm2109 lincRNA Interval_155296 chr8 31037685 31037959 + 0 NA Intergenic Intergenic 33914 ENSMUSG00000109614.1 ENSMUSG00000109614 ENSMUST00000211579 Gm45252 processed_pseudogene Interval_97176 chr2 132028925 132030767 + 0 NA promoter-TSS (ENSMUSG00000027339.15) protein_coding-promoter-TSS (ENSMUSG00000027339.15) -8673 ENSMUSG00000027339.15 ENSMUSG00000027339 ENSMUST00000140791 Rassf2 protein_coding Interval_151363 chr7 121780787 121781091 + 0 NA Intergenic Intergenic 46460 ENSMUSG00000000216.8 ENSMUSG00000000216 ENSMUST00000000221 Scnn1g protein_coding Interval_121897 chr5 9265526 9266822 + 0 NA promoter-TSS (ENSMUSG00000056004.16) protein_coding-promoter-TSS (ENSMUSG00000056004.16) 56 ENSMUSG00000056004.16 ENSMUSG00000056004 ENSMUST00000142202 9330182L06Rik protein_coding Interval_76224 chr17 78157544 78158454 + 0 NA promoter-TSS (ENSMUSG00000117493.1) processed_pseudogene-promoter-TSS (ENSMUSG00000117493.1) 9 ENSMUSG00000117493.1 ENSMUSG00000117493 ENSMUST00000235049 Gm50030 processed_pseudogene Interval_169593 chr9 99338872 99340593 + 0 NA promoter-TSS (ENSMUSG00000037681.13) protein_coding-promoter-TSS (ENSMUSG00000037681.13) 16906 ENSMUSG00000103452.1 ENSMUSG00000103452 ENSMUST00000191694 1700008A23Rik TEC Interval_121222 chr4 154158995 154159360 + 0 NA TTS (ENSMUSG00000029030.14) protein_coding-TTS (ENSMUSG00000029030.14) 989 ENSMUSG00000029030.14 ENSMUSG00000029030 ENSMUST00000133165 Tprgl protein_coding Interval_12017 chr1 188891171 188891584 + 0 NA intron (ENSMUSG00000026609.15, intron 60 of 70) protein_coding-intron (ENSMUSG00000026609.15, intron 60 of 70) 116464 ENSMUSG00000026608.13 ENSMUSG00000026608 ENSMUST00000193273 Kctd3 protein_coding Interval_8025 chr1 135271757 135272713 + 0 NA promoter-TSS (ENSMUSG00000041926.15) protein_coding-promoter-TSS (ENSMUSG00000041926.15) 5183 ENSMUSG00000041926.15 ENSMUSG00000041926 ENSMUST00000189615 Rnpep protein_coding Interval_57905 chr15 25295384 25296982 + 0 NA exon (ENSMUSG00000115355.1, exon 3 of 3) lincRNA-exon (ENSMUSG00000115355.1, exon 3 of 3) 36465 ENSMUSG00000115355.1 ENSMUSG00000115355 ENSMUST00000228450 4930445E18Rik lincRNA Interval_85225 chr19 23972130 23972460 + 0 NA TTS (ENSMUSG00000071604.5) protein_coding-TTS (ENSMUSG00000071604.5) 4140 ENSMUSG00000071604.5 ENSMUSG00000071604 ENSMUST00000236123 Fam189a2 protein_coding Interval_13468 chr10 18462867 18463630 + 0 NA intron (ENSMUSG00000039835.16, intron 1 of 3) protein_coding-intron (ENSMUSG00000039835.16, intron 1 of 6) 82816 ENSMUSG00000019853.6 ENSMUSG00000019853 ENSMUST00000214548 Hebp2 protein_coding Interval_137096 chr6 67313727 67314685 + 0 NA intron (ENSMUSG00000018341.12, intron 3 of 9) protein_coding-intron (ENSMUSG00000018341.12, intron 9 of 15) 25488 ENSMUSG00000018341.12 ENSMUSG00000018341 ENSMUST00000018485 Il12rb2 protein_coding Interval_139982 chr6 113178164 113179331 + 0 NA intron (ENSMUSG00000042873.11, intron 1 of 1) protein_coding-intron (ENSMUSG00000042873.11, intron 2 of 3) 15196 ENSMUSG00000042873.11 ENSMUSG00000042873 ENSMUST00000203665 Lhfpl4 protein_coding Interval_11944 chr1 187376689 187376930 + 0 NA intron (ENSMUSG00000104245.1, intron 1 of 1) antisense-intron (ENSMUSG00000104245.1, intron 1 of 1) 660 ENSMUSG00000104245.1 ENSMUSG00000104245 ENSMUST00000192285 Gm38155 antisense Interval_173940 chrX 113927526 113928008 + 0 NA Intergenic Intergenic -49313 ENSMUSG00000087765.1 ENSMUSG00000087765 ENSMUST00000157140 Gm23985 snoRNA Interval_133996 chr6 17606283 17606510 + 0 NA Intergenic Intergenic -30639 ENSMUSG00000015733.13 ENSMUSG00000015733 ENSMUST00000142592 Capza2 protein_coding Interval_134855 chr6 32605605 32605944 + 0 NA Intergenic Intergenic -4345 ENSMUSG00000084386.1 ENSMUSG00000084386 ENSMUST00000122350 Gm13852 processed_pseudogene Interval_81938 chr18 66039692 66041863 + 0 NA Intergenic Intergenic 3950 ENSMUSG00000117907.1 ENSMUSG00000117907 ENSMUST00000235539 Gm50142 lincRNA Interval_23448 chr11 22690696 22691131 + 0 NA Intergenic Intergenic 42073 ENSMUSG00000085979.1 ENSMUSG00000085979 ENSMUST00000143643 Gm12055 lincRNA Interval_70589 chr17 12158837 12160299 + 0 NA intron (ENSMUSG00000023827.8, intron 1 of 6) protein_coding-intron (ENSMUSG00000023827.8, intron 2 of 8) -30353 ENSMUSG00000063911.4 ENSMUSG00000063911 ENSMUST00000074412 Tdgf1-ps2 processed_pseudogene Interval_153154 chr7 141901657 141903053 + 0 NA promoter-TSS (ENSMUSG00000025139.14) protein_coding-promoter-TSS (ENSMUSG00000025139.14) -47 ENSMUSG00000025139.14 ENSMUSG00000025139 ENSMUST00000211231 Tollip protein_coding Interval_102490 chr3 27159207 27159774 + 0 NA Intergenic Intergenic 5464 ENSMUSG00000097584.1 ENSMUSG00000097584 ENSMUST00000181124 1700125G22Rik lincRNA Interval_169464 chr9 97701588 97702709 + 0 NA intron (ENSMUSG00000032452.12, intron 2 of 16) protein_coding-intron (ENSMUSG00000032452.12, intron 2 of 17) 228007 ENSMUSG00000104462.1 ENSMUSG00000104462 ENSMUST00000191863 Gm37661 TEC Interval_74302 chr17 48674497 48674809 + 0 NA Intergenic Intergenic 18054 ENSMUSG00000088483.1 ENSMUSG00000088483 ENSMUST00000157858 Gm23642 misc_RNA Interval_6327 chr1 105929733 105930362 + 0 NA Intergenic Intergenic -15507 ENSMUSG00000089206.1 ENSMUSG00000089206 ENSMUST00000158581 Gm26214 snRNA Interval_82852 chr18 77495399 77496105 + 0 NA intron (ENSMUSG00000025427.15, intron 1 of 4) protein_coding-intron (ENSMUSG00000025427.15, intron 1 of 7) -17688 ENSMUSG00000117855.1 ENSMUSG00000117855 ENSMUST00000236419 Gm50197 processed_pseudogene Interval_163950 chr9 29550285 29550509 + 0 NA intron (ENSMUSG00000059974.10, intron 1 of 2) protein_coding-intron (ENSMUSG00000059974.10, intron 1 of 7) 42113 ENSMUSG00000085638.1 ENSMUSG00000085638 ENSMUST00000141752 Gm15521 sense_intronic Interval_34787 chr12 11197291 11199275 + 0 NA intron (ENSMUSG00000112041.1, intron 2 of 4) lincRNA-intron (ENSMUSG00000112041.1, intron 2 of 2) 6098 ENSMUSG00000112041.1 ENSMUSG00000112041 ENSMUST00000218368 9530020I12Rik lincRNA Interval_141470 chr6 128456039 128456809 + 0 NA intron (ENSMUSG00000059659.7, intron 2 of 4) antisense-intron (ENSMUSG00000059659.7, intron 2 of 2) -8026 ENSMUSG00000107505.1 ENSMUSG00000107505 ENSMUST00000203239 Stambp-ps1 processed_pseudogene Interval_100893 chr2 173203285 173203852 + 0 NA Intergenic Intergenic 15329 ENSMUSG00000027514.14 ENSMUSG00000027514 ENSMUST00000109116 Zbp1 protein_coding Interval_71264 chr17 21738970 21739216 + 0 NA intron (ENSMUSG00000061544.13, intron 2 of 5) protein_coding-intron (ENSMUSG00000061544.13, intron 2 of 5) 5369 ENSMUSG00000061544.13 ENSMUSG00000061544 ENSMUST00000182603 Zfp229 protein_coding Interval_93547 chr2 74017289 74017882 + 0 NA Intergenic Intergenic -56916 ENSMUSG00000083072.2 ENSMUSG00000083072 ENSMUST00000119237 Gm13668 processed_pseudogene Interval_8969 chr1 152809605 152810191 + 0 NA promoter-TSS (ENSMUSG00000026480.12) protein_coding-promoter-TSS (ENSMUSG00000026480.12) 2061 ENSMUSG00000026480.12 ENSMUSG00000026480 ENSMUST00000187235 Ncf2 protein_coding Interval_1765 chr1 33642788 33643058 + 0 NA intron (ENSMUSG00000026134.11, intron 5 of 13) protein_coding-intron (ENSMUSG00000026134.11, intron 5 of 13) -14858 ENSMUSG00000102093.1 ENSMUSG00000102093 ENSMUST00000185377 Gm17813 processed_pseudogene Interval_160772 chr8 112066564 112066768 + 0 NA Intergenic Intergenic 4161 ENSMUSG00000065700.1 ENSMUSG00000065700 ENSMUST00000083766 Gm22827 snRNA Interval_84238 chr19 8966424 8967682 + 0 NA promoter-TSS (ENSMUSG00000071644.10) protein_coding-promoter-TSS (ENSMUSG00000071644.10) -1163 ENSMUSG00000071644.10 ENSMUSG00000071644 ENSMUST00000135025 Eef1g protein_coding Interval_97288 chr2 133112136 133112392 + 0 NA Intergenic Intergenic -64712 ENSMUSG00000082940.1 ENSMUSG00000082940 ENSMUST00000119075 Gm14103 processed_pseudogene Interval_4929 chr1 82745812 82746425 + 0 NA promoter-TSS (ENSMUSG00000026150.14) protein_coding-promoter-TSS (ENSMUSG00000026150.14) 4140 ENSMUSG00000026150.14 ENSMUSG00000026150 ENSMUST00000162573 Mff protein_coding Interval_168303 chr9 78533078 78534840 + 0 NA Intergenic Intergenic 13413 ENSMUSG00000111417.1 ENSMUSG00000111417 ENSMUST00000214586 Gm47430 lincRNA Interval_66393 chr16 33576375 33577328 + 0 NA intron (ENSMUSG00000035506.16, intron 4 of 10) protein_coding-intron (ENSMUSG00000035506.16, intron 4 of 12) -39539 ENSMUSG00000035506.16 ENSMUSG00000035506 ENSMUST00000149291 Slc12a8 protein_coding Interval_43340 chr13 29398636 29399377 + 0 NA intron (ENSMUSG00000006191.17, intron 13 of 16) protein_coding-intron (ENSMUSG00000006191.17, intron 13 of 15) 118448 ENSMUSG00000006191.17 ENSMUSG00000006191 ENSMUST00000129231 Cdkal1 protein_coding Interval_118247 chr4 129793540 129796516 + 0 NA Intergenic Intergenic -25680 ENSMUSG00000028788.14 ENSMUSG00000028788 ENSMUST00000141754 Ptp4a2 protein_coding Interval_5151 chr1 86062690 86062940 + 0 NA Intergenic Intergenic -1826 ENSMUSG00000026229.17 ENSMUSG00000026229 ENSMUST00000149946 Psmd1 protein_coding Interval_117599 chr4 124935717 124937477 + 0 NA promoter-TSS (ENSMUSG00000044730.17) protein_coding-promoter-TSS (ENSMUSG00000044730.17) 2714 ENSMUSG00000028873.16 ENSMUSG00000028873 ENSMUST00000165281 Cdca8 protein_coding Interval_134750 chr6 31202805 31203086 + 0 NA intron (ENSMUSG00000044471.12, intron 1 of 3) lincRNA-intron (ENSMUSG00000044471.12, intron 1 of 3) 13421 ENSMUSG00000044471.12 ENSMUSG00000044471 ENSMUST00000229779 Lncpint lincRNA Interval_101398 chr2 181042096 181042630 + 0 NA intron (ENSMUSG00000027577.14, intron 1 of 3) protein_coding-intron (ENSMUSG00000027577.14, intron 1 of 3) -14035 ENSMUSG00000027577.14 ENSMUSG00000027577 ENSMUST00000124400 Chrna4 protein_coding Interval_92546 chr2 60464529 60464944 + 0 NA intron (ENSMUSG00000054580.14, intron 11 of 12) protein_coding-intron (ENSMUSG00000054580.14, intron 11 of 29) 53211 ENSMUSG00000087283.1 ENSMUSG00000087283 ENSMUST00000131457 Gm13580 antisense Interval_31060 chr11 97941960 97942316 + 0 NA promoter-TSS (ENSMUSG00000093013.1) miRNA-promoter-TSS (ENSMUSG00000093013.1) -398 ENSMUSG00000093013.1 ENSMUSG00000093013 ENSMUST00000175272 Gm22461 miRNA Interval_15802 chr10 57098917 57099131 + 0 NA Intergenic Intergenic -18198 ENSMUSG00000112345.1 ENSMUSG00000112345 ENSMUST00000218944 Gm40652 lincRNA Interval_89090 chr2 16151955 16152163 + 0 NA intron (ENSMUSG00000075520.5, intron 35 of 38) protein_coding-intron (ENSMUSG00000075520.5, intron 35 of 38) -128634 ENSMUSG00000103865.1 ENSMUSG00000103865 ENSMUST00000193596 Gm37416 TEC Interval_134161 chr6 22097891 22098435 + 0 NA intron (ENSMUSG00000062980.15, intron 5 of 8) protein_coding-intron (ENSMUSG00000062980.15, intron 6 of 9) 72220 ENSMUSG00000062980.15 ENSMUSG00000062980 ENSMUST00000154734 Cped1 protein_coding Interval_46783 chr13 70354859 70355312 + 0 NA Intergenic Intergenic 67696 ENSMUSG00000114054.1 ENSMUSG00000114054 ENSMUST00000220989 Gm47706 processed_pseudogene Interval_23841 chr11 27038741 27039434 + 0 NA Intergenic Intergenic -12610 ENSMUSG00000083895.1 ENSMUSG00000083895 ENSMUST00000120189 Gm12074 processed_pseudogene Interval_81379 chr18 59954934 59955610 + 0 NA Intergenic Intergenic 57718 ENSMUSG00000117999.1 ENSMUSG00000117999 ENSMUST00000237612 Gm18217 processed_pseudogene Interval_139277 chr6 97806503 97807745 + 0 NA promoter-TSS (ENSMUSG00000035158.15) protein_coding-promoter-TSS (ENSMUSG00000035158.15) 16612 ENSMUSG00000089464.1 ENSMUSG00000089464 ENSMUST00000158839 Gm23703 snoRNA Interval_79565 chr18 33797943 33798195 + 0 NA exon (ENSMUSG00000024376.7, exon 1 of 1) protein_coding-exon (ENSMUSG00000024376.7, exon 1 of 1) 2905 ENSMUSG00000092819.1 ENSMUSG00000092819 ENSMUST00000175078 Gm23639 snoRNA Interval_20086 chr10 113907631 113907838 + 0 NA Intergenic Intergenic -88913 ENSMUSG00000104006.1 ENSMUSG00000104006 ENSMUST00000193608 Gm38333 TEC Interval_100009 chr2 166475530 166475976 + 0 NA Intergenic Intergenic 28302 ENSMUSG00000085129.1 ENSMUSG00000085129 ENSMUST00000127920 5031425F14Rik lincRNA Interval_156002 chr8 41824649 41825863 + 0 NA Intergenic Intergenic -2011 ENSMUSG00000102046.1 ENSMUSG00000102046 ENSMUST00000188324 2810404M03Rik lincRNA Interval_106297 chr3 95228106 95229293 + 0 NA promoter-TSS (ENSMUSG00000046722.14) protein_coding-promoter-TSS (ENSMUSG00000046722.14) -111 ENSMUSG00000046722.14 ENSMUSG00000046722 ENSMUST00000107199 Cdc42se1 protein_coding Interval_126077 chr5 77245226 77246586 + 0 NA Intergenic Intergenic 18528 ENSMUSG00000107034.1 ENSMUSG00000107034 ENSMUST00000201959 Gm19060 processed_pseudogene Interval_78711 chr18 18633173 18633410 + 0 NA Intergenic Intergenic -389134 ENSMUSG00000117574.1 ENSMUSG00000117574 ENSMUST00000234831 Gm50084 lincRNA Interval_60633 chr15 75834546 75836092 + 0 NA intron (ENSMUSG00000075600.3, intron 3 of 11) protein_coding-intron (ENSMUSG00000075600.3, intron 3 of 11) -7110 ENSMUSG00000075600.3 ENSMUSG00000075600 ENSMUST00000229000 Zc3h3 protein_coding Interval_44922 chr13 49874337 49874556 + 0 NA Intergenic Intergenic -8511 ENSMUSG00000113333.1 ENSMUSG00000113333 ENSMUST00000221777 Gm19011 processed_pseudogene Interval_124958 chr5 62209144 62209386 + 0 NA Intergenic Intergenic -76781 ENSMUSG00000077228.1 ENSMUSG00000077228 ENSMUST00000104040 Gm22273 snoRNA Interval_74172 chr17 46895496 46895909 + 0 NA Intergenic Intergenic 5018 ENSMUSG00000036430.8 ENSMUSG00000036430 ENSMUST00000040434 Tbcc protein_coding Interval_110125 chr3 153536760 153537231 + 0 NA intron (ENSMUSG00000052544.9, intron 1 of 4) protein_coding-intron (ENSMUSG00000052544.9, intron 1 of 2) -27253 ENSMUSG00000052544.9 ENSMUSG00000052544 ENSMUST00000198775 St6galnac3 protein_coding Interval_83804 chr19 4785251 4785591 + 0 NA exon (ENSMUSG00000094936.8, exon 3 of 3) protein_coding-exon (ENSMUSG00000094936.8, exon 3 of 3) 8459 ENSMUSG00000094936.8 ENSMUSG00000094936 ENSMUST00000179820 Rbm4 protein_coding Interval_151656 chr7 125743499 125743810 + 0 NA intron (ENSMUSG00000032743.15, intron 2 of 27) protein_coding-intron (ENSMUSG00000032743.15, intron 2 of 27) 35737 ENSMUSG00000032743.15 ENSMUSG00000032743 ENSMUST00000155059 D430042O09Rik protein_coding Interval_92860 chr2 66962040 66962351 + 0 NA Intergenic Intergenic 19637 ENSMUSG00000082218.1 ENSMUSG00000082218 ENSMUST00000122405 Gm13602 processed_pseudogene Interval_42152 chr13 9198898 9199764 + 0 NA Intergenic Intergenic -24206 ENSMUSG00000113936.1 ENSMUSG00000113936 ENSMUST00000222096 Gm8784 processed_pseudogene Interval_63486 chr15 101375518 101376278 + 0 NA promoter-TSS (ENSMUSG00000116114.1) antisense-promoter-TSS (ENSMUSG00000116114.1) 2546 ENSMUSG00000116114.1 ENSMUSG00000116114 ENSMUST00000229169 Gm35853 antisense Interval_4696 chr1 77412965 77413706 + 0 NA intron (ENSMUSG00000026235.14, intron 4 of 15) protein_coding-intron (ENSMUSG00000026235.14, intron 5 of 17) 83433 ENSMUSG00000099141.1 ENSMUSG00000099141 ENSMUST00000184495 Mir6352 miRNA Interval_20217 chr10 116084165 116084383 + 0 NA intron (ENSMUSG00000020151.16, intron 2 of 13) protein_coding-intron (ENSMUSG00000020151.16, intron 2 of 13) 29428 ENSMUSG00000074734.3 ENSMUSG00000074734 ENSMUST00000219858 Taf7l2 protein_coding Interval_105165 chr3 83064638 83065005 + 0 NA intron (ENSMUSG00000027998.11, intron 6 of 14) protein_coding-intron (ENSMUSG00000027998.11, intron 6 of 14) -3223 ENSMUSG00000027998.11 ENSMUSG00000027998 ENSMUST00000135813 Plrg1 protein_coding Interval_24687 chr11 35921865 35923018 + 0 NA intron (ENSMUSG00000018849.6, intron 1 of 22) protein_coding-intron (ENSMUSG00000018849.6, intron 1 of 22) -68887 ENSMUSG00000018849.6 ENSMUSG00000018849 ENSMUST00000127086 Wwc1 protein_coding Interval_51865 chr14 33146190 33147059 + 0 NA intron (ENSMUSG00000051506.17, intron 8 of 61) protein_coding-intron (ENSMUSG00000051506.17, intron 8 of 58) 38884 ENSMUSG00000051506.17 ENSMUSG00000051506 ENSMUST00000159606 Wdfy4 protein_coding Interval_22825 chr11 16385387 16386426 + 0 NA intron (ENSMUSG00000048834.16, intron 5 of 6) protein_coding-intron (ENSMUSG00000048834.16, intron 5 of 6) -53348 ENSMUSG00000083925.1 ENSMUSG00000083925 ENSMUST00000118857 Gm12012 processed_pseudogene Interval_5553 chr1 89769757 89770944 + 0 NA intron (ENSMUSG00000055013.16, intron 12 of 17) protein_coding-intron (ENSMUSG00000055013.16, intron 12 of 17) -18813 ENSMUSG00000055013.16 ENSMUSG00000055013 ENSMUST00000212924 Agap1 protein_coding Interval_95299 chr2 105929627 105929803 + 0 NA intron (ENSMUSG00000042670.5, intron 2 of 6) protein_coding-intron (ENSMUSG00000042670.5, intron 2 of 6) 25077 ENSMUSG00000042670.5 ENSMUSG00000042670 ENSMUST00000037499 Immp1l protein_coding Interval_164888 chr9 42832911 42833819 + 0 NA intron (ENSMUSG00000032017.14, intron 1 of 20) protein_coding-intron (ENSMUSG00000032017.14, intron 1 of 20) 28764 ENSMUSG00000076355.2 ENSMUSG00000076355 ENSMUST00000102400 Gm27509 miRNA Interval_156095 chr8 44441804 44442072 + 0 NA Intergenic Intergenic 106136 ENSMUSG00000092685.1 ENSMUSG00000092685 ENSMUST00000174944 Gm26241 miRNA Interval_120118 chr4 141940453 141941471 + 0 NA intron (ENSMUSG00000051435.11, intron 2 of 6) protein_coding-intron (ENSMUSG00000051435.11, intron 13 of 31) -18536 ENSMUSG00000051435.11 ENSMUSG00000051435 ENSMUST00000125293 Fhad1 protein_coding Interval_42735 chr13 18725941 18728236 + 0 NA intron (ENSMUSG00000041236.8, intron 2 of 4) protein_coding-intron (ENSMUSG00000041236.8, intron 2 of 28) -52755 ENSMUSG00000041236.8 ENSMUSG00000041236 ENSMUST00000222102 Vps41 protein_coding Interval_8062 chr1 135509235 135510993 + 0 NA intron (ENSMUSG00000009418.16, intron 6 of 30) protein_coding-intron (ENSMUSG00000009418.16, intron 3 of 29) 15224 ENSMUSG00000104524.1 ENSMUSG00000104524 ENSMUST00000192904 Gm37333 TEC Interval_155124 chr8 26831128 26831326 + 0 NA intron (ENSMUSG00000100335.2, intron 2 of 3) lincRNA-intron (ENSMUSG00000100335.2, intron 1 of 2) 50912 ENSMUSG00000110297.1 ENSMUSG00000110297 ENSMUST00000209789 Gm45647 processed_pseudogene Interval_116040 chr4 107163876 107164496 + 0 NA intron (ENSMUSG00000028619.15, intron 2 of 3) protein_coding-intron (ENSMUSG00000028619.15, intron 3 of 4) 14022 ENSMUSG00000028619.15 ENSMUSG00000028619 ENSMUST00000131474 Tceanc2 protein_coding Interval_42372 chr13 12435157 12435928 + 0 NA TTS (ENSMUSG00000050244.9) protein_coding-TTS (ENSMUSG00000050244.9) -9937 ENSMUSG00000113931.1 ENSMUSG00000113931 ENSMUST00000221839 Gm5928 processed_pseudogene Interval_134595 chr6 29826033 29826244 + 0 NA intron (ENSMUSG00000029772.17, intron 3 of 4) protein_coding-intron (ENSMUSG00000029772.17, intron 1 of 16) -50541 ENSMUSG00000029772.17 ENSMUSG00000029772 ENSMUST00000128837 Ahcyl2 protein_coding Interval_34312 chr12 3309130 3310617 + 0 NA promoter-TSS (ENSMUSG00000020671.9) protein_coding-promoter-TSS (ENSMUSG00000020671.9) 96 ENSMUSG00000020671.9 ENSMUSG00000020671 ENSMUST00000021001 Rab10 protein_coding Interval_123843 chr5 35900064 35901804 + 0 NA intron (ENSMUSG00000029094.12, intron 1 of 16) protein_coding-intron (ENSMUSG00000029094.12, intron 1 of 16) -16963 ENSMUSG00000082692.2 ENSMUSG00000082692 ENSMUST00000119066 H2af-ps processed_pseudogene Interval_72709 chr17 31676810 31678350 + 0 NA promoter-TSS (ENSMUSG00000024041.10) protein_coding-promoter-TSS (ENSMUSG00000024041.10) -227 ENSMUSG00000024041.10 ENSMUSG00000024041 ENSMUST00000228305 Cryaa protein_coding Interval_124118 chr5 38479974 38480408 + 0 NA promoter-TSS (ENSMUSG00000005107.13) protein_coding-promoter-TSS (ENSMUSG00000005107.13) -9 ENSMUSG00000005107.13 ENSMUSG00000005107 ENSMUST00000156076 Slc2a9 protein_coding Interval_11166 chr1 179794647 179794943 + 0 NA exon (ENSMUSG00000026491.13, exon 1 of 1) protein_coding-exon (ENSMUSG00000026491.13, exon 1 of 1) 7277 ENSMUSG00000026491.13 ENSMUSG00000026491 ENSMUST00000147137 Ahctf1 protein_coding Interval_154202 chr8 13405961 13406391 + 0 NA intron (ENSMUSG00000031450.8, intron 1 of 5) protein_coding-intron (ENSMUSG00000031450.8, intron 1 of 6) 1070 ENSMUSG00000031450.8 ENSMUSG00000031450 ENSMUST00000211027 Grk1 protein_coding Interval_133956 chr6 16524066 16524417 + 0 NA Intergenic Intergenic -26146 ENSMUSG00000108025.1 ENSMUSG00000108025 ENSMUST00000204284 Gm36503 lincRNA Interval_66544 chr16 35003625 35004616 + 0 NA exon (ENSMUSG00000116840.1, exon 3 of 3) antisense-exon (ENSMUSG00000116840.1, exon 3 of 3) 18780 ENSMUSG00000116840.1 ENSMUSG00000116840 ENSMUST00000232358 Gm21691 antisense Interval_57418 chr15 10670674 10670997 + 0 NA intron (ENSMUSG00000022246.14, intron 2 of 16) protein_coding-intron (ENSMUSG00000022246.14, intron 2 of 17) 43263 ENSMUSG00000022246.14 ENSMUSG00000022246 ENSMUST00000227366 Rai14 protein_coding Interval_40423 chr12 104791401 104791689 + 0 NA intron (ENSMUSG00000021097.15, intron 5 of 14) protein_coding-intron (ENSMUSG00000021097.15, intron 5 of 12) -65826 ENSMUSG00000021101.2 ENSMUSG00000021101 ENSMUST00000021520 4930408O17Rik lincRNA Interval_40785 chr12 108373547 108374133 + 0 NA intron (ENSMUSG00000058070.14, intron 1 of 6) protein_coding-intron (ENSMUSG00000058070.14, intron 1 of 6) 27755 ENSMUSG00000021259.5 ENSMUSG00000021259 ENSMUST00000222240 Cyp46a1 protein_coding Interval_165264 chr9 45857023 45857770 + 0 NA TTS (ENSMUSG00000032086.12) protein_coding-TTS (ENSMUSG00000032086.12) 961 ENSMUSG00000089810.1 ENSMUSG00000089810 ENSMUST00000162209 Gm16536 antisense Interval_67075 chr16 42624084 42624305 + 0 NA Intergenic Intergenic -39732 ENSMUSG00000116679.1 ENSMUSG00000116679 ENSMUST00000232064 Gm49739 processed_pseudogene Interval_19912 chr10 111164297 111165722 + 0 NA exon (ENSMUSG00000020189.15, exon 1 of 23) protein_coding-exon (ENSMUSG00000020189.15, exon 1 of 23) 8793 ENSMUSG00000111968.1 ENSMUSG00000111968 ENSMUST00000217847 Gm8873 processed_pseudogene Interval_157511 chr8 71050415 71050801 + 0 NA intron (ENSMUSG00000110554.1, intron 5 of 14) lincRNA-intron (ENSMUSG00000101854.2, intron 1 of 4) 23816 ENSMUSG00000110554.1 ENSMUSG00000110554 ENSMUST00000212780 Gm35256 lincRNA Interval_104287 chr3 62879183 62879909 + 0 NA Intergenic Intergenic 44687 ENSMUSG00000063001.10 ENSMUSG00000063001 ENSMUST00000077976 Gm9701 processed_pseudogene Interval_7106 chr1 125910667 125913014 + 0 NA promoter-TSS (ENSMUSG00000026344.9) protein_coding-promoter-TSS (ENSMUSG00000026344.9) -453 ENSMUSG00000026344.9 ENSMUSG00000026344 ENSMUST00000161361 Lypd1 protein_coding Interval_128777 chr5 115202900 115204904 + 0 NA Intergenic Intergenic 5559 ENSMUSG00000083182.1 ENSMUSG00000083182 ENSMUST00000122278 Gm13828 processed_pseudogene Interval_5213 chr1 86481176 86482751 + 0 NA Intergenic Intergenic 8304 ENSMUSG00000101328.1 ENSMUSG00000101328 ENSMUST00000163337 Rpl30-ps6 processed_pseudogene Interval_83208 chr18 82776172 82778382 + 0 NA Intergenic Intergenic -18236 ENSMUSG00000101773.1 ENSMUSG00000101773 ENSMUST00000188435 2210420H20Rik lincRNA Interval_91589 chr2 44178444 44178657 + 0 NA intron (ENSMUSG00000049744.15, intron 11 of 14) protein_coding-intron (ENSMUSG00000049744.15, intron 11 of 13) -113226 ENSMUSG00000085089.1 ENSMUSG00000085089 ENSMUST00000139948 Arhgap15os antisense Interval_109635 chr3 145610623 145610959 + 0 NA Intergenic Intergenic 34544 ENSMUSG00000074182.8 ENSMUSG00000074182 ENSMUST00000197474 Znhit6 protein_coding Interval_170645 chr9 109872477 109872711 + 0 NA Intergenic Intergenic -11010 ENSMUSG00000032477.14 ENSMUSG00000032477 ENSMUST00000198219 Cdc25a protein_coding Interval_23438 chr11 22620547 22622965 + 0 NA Intergenic Intergenic 4348 ENSMUSG00000086256.1 ENSMUSG00000086256 ENSMUST00000142151 Gm12052 lincRNA Interval_117183 chr4 120304613 120304798 + 0 NA TTS (ENSMUSG00000084929.1) antisense-TTS (ENSMUSG00000084929.1) 13355 ENSMUSG00000084929.1 ENSMUSG00000084929 ENSMUST00000152384 Foxo6os antisense Interval_148503 chr7 81899022 81899695 + 0 NA exon (ENSMUSG00000025104.13, exon 4 of 4) protein_coding-exon (ENSMUSG00000025104.13, exon 4 of 4) 20992 ENSMUSG00000109090.1 ENSMUSG00000109090 ENSMUST00000207066 Gm45088 TEC Interval_78989 chr18 23663205 23663568 + 0 NA Intergenic Intergenic -11549 ENSMUSG00000114088.1 ENSMUSG00000114088 ENSMUST00000220789 Gm47898 antisense Interval_124272 chr5 43252634 43252905 + 0 NA intron (ENSMUSG00000039782.15, intron 3 of 10) protein_coding-intron (ENSMUSG00000039782.15, intron 4 of 10) 4584 ENSMUSG00000105374.1 ENSMUSG00000105374 ENSMUST00000197701 Gm42551 TEC Interval_52101 chr14 36050527 36051334 + 0 NA exon (ENSMUSG00000115295.1, exon 1 of 1) processed_pseudogene-exon (ENSMUSG00000115295.1, exon 1 of 1) 370 ENSMUSG00000115295.1 ENSMUSG00000115295 ENSMUST00000227394 Gm19129 processed_pseudogene Interval_30464 chr11 94538606 94539479 + 0 NA TTS (ENSMUSG00000039096.10) protein_coding-TTS (ENSMUSG00000039096.10) 9560 ENSMUSG00000039096.10 ENSMUSG00000039096 ENSMUST00000148888 Rsad1 protein_coding Interval_112506 chr4 41670629 41671097 + 0 NA TTS (ENSMUSG00000028444.17) protein_coding-TTS (ENSMUSG00000028444.17) -6829 ENSMUSG00000028444.17 ENSMUSG00000028444 ENSMUST00000145379 Cntfr protein_coding Interval_168534 chr9 83265906 83266261 + 0 NA Intergenic Intergenic -12061 ENSMUSG00000098747.7 ENSMUSG00000098747 ENSMUST00000184080 Gm27216 lincRNA Interval_112662 chr4 43920826 43921039 + 0 NA intron (ENSMUSG00000028476.13, intron 10 of 21) protein_coding-intron (ENSMUSG00000028476.13, intron 10 of 20) 15854 ENSMUSG00000099252.1 ENSMUSG00000099252 ENSMUST00000183559 Gm27265 misc_RNA Interval_19130 chr10 94911210 94912758 + 0 NA intron (ENSMUSG00000074785.5, intron 1 of 4) protein_coding-intron (ENSMUSG00000074785.5, intron 2 of 30) -28192 ENSMUSG00000112736.1 ENSMUSG00000112736 ENSMUST00000220244 Gm48718 TEC Interval_96297 chr2 121366009 121366244 + 0 NA intron (ENSMUSG00000033498.14, intron 23 of 28) protein_coding-intron (ENSMUSG00000033498.14, intron 23 of 28) 3208 ENSMUSG00000000308.14 ENSMUSG00000000308 ENSMUST00000153040 Ckmt1 protein_coding Interval_142165 chr6 137746910 137748114 + 0 NA intron (ENSMUSG00000030224.10, intron 2 of 2) protein_coding-intron (ENSMUSG00000030224.10, intron 7 of 9) 2472 ENSMUSG00000030224.10 ENSMUSG00000030224 ENSMUST00000137235 Strap protein_coding Interval_169717 chr9 100620027 100620309 + 0 NA intron (ENSMUSG00000037286.15, intron 1 of 3) protein_coding-intron (ENSMUSG00000037286.15, intron 1 of 3) 5797 ENSMUSG00000086225.1 ENSMUSG00000086225 ENSMUST00000118688 Gm8661 processed_pseudogene Interval_103356 chr3 40295155 40296656 + 0 NA Intergenic Intergenic 213869 ENSMUSG00000037884.6 ENSMUSG00000037884 ENSMUST00000202778 1700017G19Rik lincRNA Interval_9152 chr1 154095993 154096715 + 0 NA intron (ENSMUSG00000100627.6, intron 2 of 3) lincRNA-intron (ENSMUSG00000100627.6, intron 2 of 2) -16155 ENSMUSG00000088669.1 ENSMUSG00000088669 ENSMUST00000158044 Gm25336 snoRNA Interval_1008 chr1 13896818 13897555 + 0 NA Intergenic Intergenic -35192 ENSMUSG00000089358.1 ENSMUSG00000089358 ENSMUST00000158733 Gm25491 misc_RNA Interval_3400 chr1 57979566 57979831 + 0 NA intron (ENSMUSG00000054770.16, intron 4 of 9) protein_coding-intron (ENSMUSG00000054770.16, intron 4 of 9) -16717 ENSMUSG00000054770.16 ENSMUSG00000054770 ENSMUST00000160130 Kctd18 protein_coding Interval_102284 chr3 20525566 20525997 + 0 NA Intergenic Intergenic -19573 ENSMUSG00000102636.1 ENSMUSG00000102636 ENSMUST00000195457 Gm31466 lincRNA Interval_129143 chr5 117756127 117756913 + 0 NA intron (ENSMUSG00000061578.8, intron 18 of 20) protein_coding-intron (ENSMUSG00000061578.8, intron 18 of 20) -110599 ENSMUSG00000029361.18 ENSMUSG00000029361 ENSMUST00000138554 Nos1 protein_coding Interval_83202 chr18 82743923 82745185 + 0 NA Intergenic Intergenic -14164 ENSMUSG00000118085.1 ENSMUSG00000118085 ENSMUST00000236831 Gm50356 lincRNA Interval_119499 chr4 137954948 137955370 + 0 NA intron (ENSMUSG00000057530.14, intron 15 of 19) protein_coding-intron (ENSMUSG00000057530.14, intron 15 of 19) -38354 ENSMUSG00000028760.16 ENSMUSG00000028760 ENSMUST00000148074 Eif4g3 protein_coding Interval_87453 chr19 51622598 51622765 + 0 NA Intergenic Intergenic -8868 ENSMUSG00000117806.1 ENSMUSG00000117806 ENSMUST00000237010 Gm50325 processed_pseudogene Interval_42073 chr13 7618825 7619092 + 0 NA Intergenic Intergenic -14086 ENSMUSG00000112939.1 ENSMUSG00000112939 ENSMUST00000221837 Gm48251 processed_pseudogene Interval_68923 chr16 88851414 88851675 + 0 NA Intergenic Intergenic 17867 ENSMUSG00000060691.4 ENSMUSG00000060691 ENSMUST00000081334 Krtap19-1 protein_coding Interval_121773 chr5 7820118 7820867 + 0 NA intron (ENSMUSG00000105068.1, intron 2 of 5) lincRNA-intron (ENSMUSG00000105068.1, intron 2 of 5) -36616 ENSMUSG00000081226.1 ENSMUSG00000081226 ENSMUST00000118633 Gm8802 processed_pseudogene Interval_60482 chr15 74212349 74214748 + 0 NA Intergenic Intergenic -119215 ENSMUSG00000082585.3 ENSMUSG00000082585 ENSMUST00000120421 Gm15387 processed_pseudogene Interval_136921 chr6 64579444 64580145 + 0 NA intron (ENSMUSG00000071424.10, intron 14 of 15) protein_coding-intron (ENSMUSG00000071424.10, intron 14 of 15) -83394 ENSMUSG00000071424.10 ENSMUSG00000071424 ENSMUST00000210324 Grid2 protein_coding Interval_141572 chr6 129423228 129424298 + 0 NA exon (ENSMUSG00000046080.17, exon 7 of 7) protein_coding-exon (ENSMUSG00000046080.17, exon 7 of 7) 5584 ENSMUSG00000107792.1 ENSMUSG00000107792 ENSMUST00000203592 Gm43914 sense_intronic Interval_51807 chr14 32332853 32333225 + 0 NA intron (ENSMUSG00000021913.8, intron 7 of 23) protein_coding-intron (ENSMUSG00000021913.8, intron 7 of 23) 11020 ENSMUSG00000021913.8 ENSMUSG00000021913 ENSMUST00000228286 Ogdhl protein_coding Interval_29623 chr11 85526604 85527788 + 0 NA intron (ENSMUSG00000059439.15, intron 6 of 14) protein_coding-intron (ENSMUSG00000059439.15, intron 15 of 24) 33437 ENSMUSG00000087779.1 ENSMUSG00000087779 ENSMUST00000157154 Gm23765 snRNA Interval_98400 chr2 152081618 152082628 + 0 NA exon (ENSMUSG00000060257.2, exon 1 of 2) protein_coding-exon (ENSMUSG00000060257.2, exon 1 of 2) 594 ENSMUSG00000060257.2 ENSMUSG00000060257 ENSMUST00000064061 Scrt2 protein_coding Interval_152333 chr7 131908495 131908699 + 0 NA intron (ENSMUSG00000030849.18, intron 2 of 6) protein_coding-intron (ENSMUSG00000030849.18, intron 2 of 6) 24057 ENSMUSG00000109340.1 ENSMUSG00000109340 ENSMUST00000208929 Gm44548 processed_pseudogene Interval_86009 chr19 34887548 34888292 + 0 NA Intergenic Intergenic -10067 ENSMUSG00000033610.16 ENSMUSG00000033610 ENSMUST00000237577 Pank1 protein_coding Interval_8044 chr1 135393724 135393917 + 0 NA TTS (ENSMUSG00000041879.13) protein_coding-TTS (ENSMUSG00000041879.13) -5120 ENSMUSG00000041879.13 ENSMUSG00000041879 ENSMUST00000159173 Ipo9 protein_coding Interval_83710 chr19 3886721 3887029 + 0 NA TTS (ENSMUSG00000024843.15) protein_coding-TTS (ENSMUSG00000024843.15) -19202 ENSMUSG00000117912.1 ENSMUSG00000117912 ENSMUST00000235621 Gm50383 antisense Interval_44875 chr13 49290841 49291843 + 0 NA intron (ENSMUSG00000037946.11, intron 3 of 17) protein_coding-intron (ENSMUSG00000037946.11, intron 3 of 17) 17898 ENSMUSG00000037946.11 ENSMUSG00000037946 ENSMUST00000110086 Fgd3 protein_coding Interval_114107 chr4 63477341 63478133 + 0 NA intron (ENSMUSG00000039137.18, intron 1 of 2) protein_coding-intron (ENSMUSG00000039137.18, intron 1 of 11) -44415 ENSMUSG00000039137.18 ENSMUSG00000039137 ENSMUST00000140720 Whrn protein_coding Interval_64429 chr16 11305306 11306255 + 0 NA Intergenic Intergenic -8032 ENSMUSG00000022496.5 ENSMUSG00000022496 ENSMUST00000023140 Tnfrsf17 protein_coding Interval_67522 chr16 50200254 50200659 + 0 NA exon (ENSMUSG00000022641.15, exon 15 of 16) protein_coding-exon (ENSMUSG00000022641.15, exon 15 of 16) 89383 ENSMUSG00000098028.1 ENSMUSG00000098028 ENSMUST00000182962 Gm8824 processed_pseudogene Interval_12097 chr1 189734857 189736337 + 0 NA intron (ENSMUSG00000026604.17, intron 1 of 9) protein_coding-intron (ENSMUSG00000026604.17, intron 1 of 18) 50269 ENSMUSG00000103374.1 ENSMUSG00000103374 ENSMUST00000193510 Gm37239 processed_pseudogene Interval_172707 chrX 44757663 44757892 + 0 NA Intergenic Intergenic 32384 ENSMUSG00000045284.9 ENSMUSG00000045284 ENSMUST00000060481 Dcaf12l1 protein_coding Interval_139146 chr6 96062597 96062877 + 0 NA Intergenic Intergenic -29368 ENSMUSG00000107747.1 ENSMUSG00000107747 ENSMUST00000204737 Gm5881 processed_pseudogene Interval_122376 chr5 21798590 21798880 + 0 NA TTS (ENSMUSG00000028932.8) protein_coding-TTS (ENSMUSG00000028932.8) 13452 ENSMUSG00000028932.8 ENSMUSG00000028932 ENSMUST00000132720 Psmc2 protein_coding Interval_81716 chr18 63859783 63860376 + 0 NA intron (ENSMUSG00000040560.10, intron 19 of 19) protein_coding-intron (ENSMUSG00000040560.10, intron 20 of 27) 38952 ENSMUSG00000118258.1 ENSMUSG00000118258 ENSMUST00000237352 Gm19076 processed_pseudogene Interval_155254 chr8 28973857 28974183 + 0 NA intron (ENSMUSG00000063626.6, intron 1 of 14) protein_coding-intron (ENSMUSG00000063626.6, intron 1 of 17) 113466 ENSMUSG00000109874.1 ENSMUSG00000109874 ENSMUST00000211467 Gm9911 TEC Interval_2551 chr1 40294098 40294388 + 0 NA intron (ENSMUSG00000026072.12, intron 4 of 10) protein_coding-intron (ENSMUSG00000026072.12, intron 4 of 10) 27586 ENSMUSG00000026072.12 ENSMUSG00000026072 ENSMUST00000195402 Il1r1 protein_coding Interval_170736 chr9 110428773 110429106 + 0 NA exon (ENSMUSG00000054792.15, exon 10 of 10) protein_coding-exon (ENSMUSG00000054792.15, exon 10 of 10) 9192 ENSMUSG00000032484.8 ENSMUSG00000032484 ENSMUST00000035061 Ngp protein_coding Interval_17963 chr10 81094662 81095627 + 0 NA intron (ENSMUSG00000035041.8, intron 1 of 2) protein_coding-intron (ENSMUSG00000035041.8, intron 1 of 11) -3238 ENSMUSG00000035041.8 ENSMUSG00000035041 ENSMUST00000125907 Creb3l3 protein_coding Interval_131144 chr5 135412450 135413447 + 0 NA intron (ENSMUSG00000039959.13, intron 16 of 18) protein_coding-intron (ENSMUSG00000039959.13, intron 29 of 30) -18402 ENSMUSG00000053293.9 ENSMUSG00000053293 ENSMUST00000111171 Pom121 protein_coding Interval_87324 chr19 47681642 47682535 + 0 NA intron (ENSMUSG00000025064.15, intron 4 of 52) protein_coding-intron (ENSMUSG00000025064.15, intron 4 of 53) -6252 ENSMUSG00000025064.15 ENSMUSG00000025064 ENSMUST00000235883 Col17a1 protein_coding Interval_117603 chr4 124953147 124953986 + 0 NA Intergenic Intergenic 10435 ENSMUSG00000044730.17 ENSMUSG00000044730 ENSMUST00000233875 9930104L06Rik protein_coding Interval_28581 chr11 76951543 76953299 + 0 NA intron (ENSMUSG00000020840.10, intron 3 of 10) protein_coding-intron (ENSMUSG00000020840.10, intron 4 of 11) 6570 ENSMUSG00000020840.10 ENSMUSG00000020840 ENSMUST00000145732 Blmh protein_coding Interval_42919 chr13 21387759 21388164 + 0 NA TTS (ENSMUSG00000021327.19) protein_coding-TTS (ENSMUSG00000021327.19) -6831 ENSMUSG00000081191.1 ENSMUSG00000081191 ENSMUST00000116054 Gm11271 processed_pseudogene Interval_56736 chr14 121747311 121747545 + 0 NA intron (ENSMUSG00000025558.19, intron 1 of 52) protein_coding-intron (ENSMUSG00000025558.19, intron 1 of 52) -8567 ENSMUSG00000025558.19 ENSMUSG00000025558 ENSMUST00000238406 Dock9 protein_coding Interval_20029 chr10 112228711 112229831 + 0 NA intron (ENSMUSG00000112564.1, intron 1 of 2) antisense-intron (ENSMUSG00000112564.1, intron 1 of 2) 1870 ENSMUSG00000112564.1 ENSMUSG00000112564 ENSMUST00000219794 Gm47419 antisense Interval_4450 chr1 74269123 74270015 + 0 NA Intergenic Intergenic -8981 ENSMUSG00000064272.3 ENSMUSG00000064272 ENSMUST00000077985 Gpbar1 protein_coding Interval_56152 chr14 107791812 107792460 + 0 NA Intergenic Intergenic 43686 ENSMUSG00000115273.1 ENSMUSG00000115273 ENSMUST00000226502 Gm9335 processed_pseudogene Interval_109747 chr3 146512858 146513835 + 0 NA intron (ENSMUSG00000028187.10, intron 3 of 4) protein_coding-intron (ENSMUSG00000028187.10, intron 3 of 8) -4854 ENSMUSG00000028187.10 ENSMUSG00000028187 ENSMUST00000199079 Rpf1 protein_coding Interval_11111 chr1 179451125 179451747 + 0 NA intron (ENSMUSG00000055067.15, intron 1 of 11) protein_coding-intron (ENSMUSG00000055067.15, intron 1 of 5) 66569 ENSMUSG00000055067.15 ENSMUSG00000055067 ENSMUST00000194237 Smyd3 protein_coding Interval_25651 chr11 50413699 50414862 + 0 NA intron (ENSMUSG00000020375.9, intron 1 of 3) protein_coding-intron (ENSMUSG00000020375.9, intron 7 of 17) 295 ENSMUSG00000020375.9 ENSMUSG00000020375 ENSMUST00000129304 Rufy1 protein_coding Interval_162468 chr8 129172860 129173962 + 0 NA intron (ENSMUSG00000056018.14, intron 4 of 6) protein_coding-intron (ENSMUSG00000056018.14, intron 12 of 14) 29295 ENSMUSG00000056018.14 ENSMUSG00000056018 ENSMUST00000189055 Ccdc7b protein_coding Interval_140213 chr6 115582495 115583542 + 0 NA TTS (ENSMUSG00000068011.4) protein_coding-TTS (ENSMUSG00000068011.4) 8570 ENSMUSG00000042389.13 ENSMUSG00000042389 ENSMUST00000143520 Tsen2 protein_coding Interval_95967 chr2 118759784 118760305 + 0 NA intron (ENSMUSG00000045838.8, intron 4 of 9) protein_coding-intron (ENSMUSG00000045838.8, intron 5 of 10) 2581 ENSMUSG00000045838.8 ENSMUSG00000045838 ENSMUST00000151270 Ccdc9b protein_coding Interval_102076 chr3 16513416 16513644 + 0 NA Intergenic Intergenic 309782 ENSMUSG00000088644.1 ENSMUSG00000088644 ENSMUST00000158019 Gm26485 snRNA Interval_102081 chr3 16751969 16752795 + 0 NA Intergenic Intergenic 70930 ENSMUSG00000088644.1 ENSMUSG00000088644 ENSMUST00000158019 Gm26485 snRNA Interval_34399 chr12 3864252 3864527 + 0 NA intron (ENSMUSG00000020661.15, intron 3 of 3) protein_coding-intron (ENSMUSG00000020661.15, intron 3 of 22) -2145 ENSMUSG00000073242.4 ENSMUSG00000073242 ENSMUST00000144896 Dnmt3aos antisense Interval_99160 chr2 157669816 157670452 + 0 NA Intergenic Intergenic 43667 ENSMUSG00000077290.1 ENSMUSG00000077290 ENSMUST00000104102 Gm25407 snoRNA Interval_157799 chr8 73324883 73325112 + 0 NA intron (ENSMUSG00000004383.18, intron 1 of 14) protein_coding-intron (ENSMUSG00000004383.18, intron 1 of 14) 28543 ENSMUSG00000004383.18 ENSMUSG00000004383 ENSMUST00000146249 Large1 protein_coding Interval_113937 chr4 60041503 60041909 + 0 NA Intergenic Intergenic 28769 ENSMUSG00000073842.10 ENSMUSG00000073842 ENSMUST00000125282 Mup7 protein_coding Interval_81910 chr18 65780581 65781016 + 0 NA Intergenic Intergenic -19757 ENSMUSG00000024516.13 ENSMUSG00000024516 ENSMUST00000235765 Sec11c protein_coding Interval_33410 chr11 116422697 116422905 + 0 NA Intergenic Intergenic -11708 ENSMUSG00000050628.6 ENSMUSG00000050628 ENSMUST00000144310 Ubald2 protein_coding Interval_127658 chr5 106366107 106366429 + 0 NA intron (ENSMUSG00000106594.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000106594.1, intron 1 of 1) 581 ENSMUSG00000106594.1 ENSMUSG00000106594 ENSMUST00000198220 4930432H08Rik lincRNA Interval_81918 chr18 65851770 65852435 + 0 NA Intergenic Intergenic 14815 ENSMUSG00000117910.1 ENSMUSG00000117910 ENSMUST00000236915 Gm50174 processed_pseudogene Interval_86687 chr19 42620085 42621242 + 0 NA Intergenic Intergenic -12132 ENSMUSG00000025185.14 ENSMUSG00000025185 ENSMUST00000166128 Loxl4 protein_coding Interval_33368 chr11 116148564 116149463 + 0 NA exon (ENSMUSG00000020776.18, exon 20 of 30) protein_coding-exon (ENSMUSG00000020776.18, exon 20 of 30) 8477 ENSMUSG00000020776.18 ENSMUSG00000020776 ENSMUST00000136073 Fbf1 protein_coding Interval_16584 chr10 64579715 64579912 + 0 NA intron (ENSMUSG00000060843.11, intron 11 of 17) protein_coding-intron (ENSMUSG00000060843.11, intron 10 of 16) -275069 ENSMUSG00000089003.1 ENSMUSG00000089003 ENSMUST00000158378 Gm23854 snRNA Interval_108721 chr3 130714799 130715619 + 0 NA Intergenic Intergenic -5793 ENSMUSG00000041084.8 ENSMUSG00000041084 ENSMUST00000197828 Ostc protein_coding Interval_132693 chr5 147198440 147199688 + 0 NA Intergenic Intergenic 1189 ENSMUSG00000077735.1 ENSMUSG00000077735 ENSMUST00000104547 Gm24556 snoRNA Interval_109447 chr3 142490516 142490897 + 0 NA Intergenic Intergenic -12090 ENSMUSG00000105504.4 ENSMUSG00000105504 ENSMUST00000199578 Gbp5 protein_coding Interval_26649 chr11 59466164 59466966 + 0 NA intron (ENSMUSG00000054519.8, intron 1 of 3) protein_coding-intron (ENSMUSG00000054519.8, intron 1 of 3) 5909 ENSMUSG00000054519.8 ENSMUSG00000054519 ENSMUST00000057799 Zfp867 protein_coding Interval_123649 chr5 34271658 34272200 + 0 NA intron (ENSMUSG00000037224.15, intron 1 of 3) protein_coding-intron (ENSMUSG00000037224.15, intron 1 of 12) -16671 ENSMUSG00000109572.1 ENSMUSG00000109572 ENSMUST00000207754 Cfap99 protein_coding Interval_104624 chr3 68925095 68925485 + 0 NA intron (ENSMUSG00000027778.15, intron 12 of 12) protein_coding-intron (ENSMUSG00000027778.15, intron 12 of 18) -7967 ENSMUSG00000111756.1 ENSMUSG00000111756 ENSMUST00000217619 Gm48183 TEC Interval_107191 chr3 104457178 104457779 + 0 NA exon (ENSMUSG00000032913.13, exon 18 of 18) protein_coding-exon (ENSMUSG00000032913.13, exon 18 of 18) 19252 ENSMUSG00000105304.1 ENSMUSG00000105304 ENSMUST00000199385 Gm43696 sense_intronic Interval_26613 chr11 59238977 59239589 + 0 NA Intergenic Intergenic -11121 ENSMUSG00000048076.14 ENSMUSG00000048076 ENSMUST00000061242 Arf1 protein_coding Interval_173476 chrX 94635809 94636899 + 0 NA exon (ENSMUSG00000071723.7, exon 1 of 1) protein_coding-exon (ENSMUSG00000071723.7, exon 1 of 1) 278 ENSMUSG00000071723.7 ENSMUSG00000071723 ENSMUST00000137033 Gspt2 protein_coding Interval_16003 chr10 60032234 60033263 + 0 NA intron (ENSMUSG00000044475.14, intron 5 of 10) protein_coding-intron (ENSMUSG00000044475.14, intron 5 of 10) 29943 ENSMUSG00000044475.14 ENSMUSG00000044475 ENSMUST00000164083 Ascc1 protein_coding Interval_97436 chr2 136177440 136177725 + 0 NA intron (ENSMUSG00000039913.12, intron 2 of 9) protein_coding-intron (ENSMUSG00000039913.12, intron 3 of 10) 40576 ENSMUSG00000085383.1 ENSMUSG00000085383 ENSMUST00000137802 Gm14218 antisense Interval_55928 chr14 102811601 102811806 + 0 NA Intergenic Intergenic 5604 ENSMUSG00000088971.1 ENSMUSG00000088971 ENSMUST00000158346 Gm23764 rRNA Interval_95524 chr2 111306543 111306757 + 0 NA exon (ENSMUSG00000109813.2, exon 1 of 1) protein_coding-exon (ENSMUSG00000109813.2, exon 1 of 1) 6015 ENSMUSG00000109813.2 ENSMUSG00000109813 ENSMUST00000090329 Olfr1279 protein_coding Interval_29390 chr11 83617648 83617844 + 0 NA intron (ENSMUSG00000051832.7, intron 5 of 8) processed_transcript-intron (ENSMUSG00000051832.7, intron 5 of 8) -3916 ENSMUSG00000051832.7 ENSMUSG00000051832 ENSMUST00000171408 E230016K23Rik processed_transcript Interval_168582 chr9 83822751 83822984 + 0 NA Intergenic Intergenic -11899 ENSMUSG00000038379.15 ENSMUSG00000038379 ENSMUST00000191484 Ttk protein_coding Interval_92706 chr2 63453164 63453410 + 0 NA Intergenic Intergenic -21093 ENSMUSG00000065837.1 ENSMUSG00000065837 ENSMUST00000083903 Gm23503 snRNA Interval_389 chr1 4825810 4827239 + 0 NA intron (ENSMUSG00000025903.14, intron 2 of 7) protein_coding-intron (ENSMUSG00000025903.14, intron 2 of 8) 18632 ENSMUSG00000104217.1 ENSMUSG00000104217 ENSMUST00000155020 Gm37988 protein_coding Interval_68176 chr16 66870819 66871141 + 0 NA intron (ENSMUSG00000064115.13, intron 2 of 3) protein_coding-intron (ENSMUSG00000064115.13, intron 3 of 9) -21523 ENSMUSG00000045178.10 ENSMUSG00000045178 ENSMUST00000050665 4933411O13Rik antisense Interval_34115 chr11 120720495 120722340 + 0 NA promoter-TSS (ENSMUSG00000018012.11) protein_coding-promoter-TSS (ENSMUSG00000018012.11) -156 ENSMUSG00000018012.11 ENSMUSG00000018012 ENSMUST00000134322 Rac3 protein_coding Interval_163024 chr9 14624099 14624305 + 0 NA intron (ENSMUSG00000013076.17, intron 2 of 13) protein_coding-intron (ENSMUSG00000013076.17, intron 2 of 13) -4637 ENSMUSG00000111540.1 ENSMUSG00000111540 ENSMUST00000216646 4930584E12Rik TEC Interval_44818 chr13 48890175 48890385 + 0 NA intron (ENSMUSG00000038014.7, intron 13 of 17) protein_coding-intron (ENSMUSG00000038014.7, intron 13 of 17) -19161 ENSMUSG00000038025.8 ENSMUSG00000038025 ENSMUST00000035540 Phf2 protein_coding Interval_89520 chr2 21612337 21612522 + 0 NA intron (ENSMUSG00000045967.11, intron 4 of 7) protein_coding-intron (ENSMUSG00000045967.11, intron 4 of 10) -168900 ENSMUSG00000080846.1 ENSMUSG00000080846 ENSMUST00000118053 Gm13379 processed_pseudogene Interval_142961 chr6 147363089 147363383 + 0 NA Intergenic Intergenic 91399 ENSMUSG00000081023.1 ENSMUSG00000081023 ENSMUST00000118025 Gm15766 processed_pseudogene Interval_88175 chr19 60310575 60311037 + 0 NA Intergenic Intergenic 68953 ENSMUSG00000099678.1 ENSMUSG00000099678 ENSMUST00000186261 Gm28351 lincRNA Interval_109704 chr3 146135931 146137456 + 0 NA intron (ENSMUSG00000036853.5, intron 8 of 11) protein_coding-intron (ENSMUSG00000036853.5, intron 8 of 11) -2387 ENSMUSG00000036853.5 ENSMUSG00000036853 ENSMUST00000146689 Mcoln3 protein_coding Interval_92772 chr2 65337581 65337927 + 0 NA intron (ENSMUSG00000061171.15, intron 7 of 11) protein_coding-intron (ENSMUSG00000061171.15, intron 7 of 11) 26246 ENSMUSG00000061171.15 ENSMUSG00000061171 ENSMUST00000141690 Slc38a11 protein_coding Interval_158490 chr8 84023342 84024422 + 0 NA intron (ENSMUSG00000047986.12, intron 1 of 5) protein_coding-intron (ENSMUSG00000047986.12, intron 1 of 6) -2193 ENSMUSG00000047986.12 ENSMUSG00000047986 ENSMUST00000154171 Palm3 protein_coding Interval_72234 chr17 28727311 28728465 + 0 NA promoter-TSS (ENSMUSG00000053436.15) protein_coding-promoter-TSS (ENSMUSG00000053436.15) 1805 ENSMUSG00000117145.1 ENSMUSG00000117145 ENSMUST00000233003 Gm4356 protein_coding Interval_154646 chr8 22295301 22296036 + 0 NA intron (ENSMUSG00000031481.8, intron 2 of 28) protein_coding-intron (ENSMUSG00000031481.8, intron 2 of 27) 12227 ENSMUSG00000031481.8 ENSMUSG00000031481 ENSMUST00000077194 Tpte protein_coding Interval_13303 chr10 14392672 14393309 + 0 NA Intergenic Intergenic 65579 ENSMUSG00000112225.1 ENSMUSG00000112225 ENSMUST00000218527 Gm48854 lincRNA Interval_126892 chr5 96792589 96793911 + 0 NA promoter-TSS (ENSMUSG00000029484.12) protein_coding-promoter-TSS (ENSMUSG00000029484.12) -191 ENSMUSG00000029484.12 ENSMUSG00000029484 ENSMUST00000196126 Anxa3 protein_coding Interval_140740 chr6 120976058 120976570 + 0 NA intron (ENSMUSG00000051586.17, intron 20 of 33) protein_coding-intron (ENSMUSG00000051586.17, intron 4 of 15) 17470 ENSMUSG00000108171.1 ENSMUSG00000108171 ENSMUST00000203013 Gm43915 antisense Interval_140858 chr6 122390678 122393809 + 0 NA exon (ENSMUSG00000040657.3, exon 2 of 2) lincRNA-exon (ENSMUSG00000040657.3, exon 2 of 2) 864 ENSMUSG00000040657.3 ENSMUSG00000040657 ENSMUST00000043553 1700063H04Rik lincRNA Interval_87893 chr19 56928025 56928625 + 0 NA exon (ENSMUSG00000025083.18, exon 8 of 20) protein_coding-exon (ENSMUSG00000025083.18, exon 8 of 20) 8913 ENSMUSG00000025083.18 ENSMUSG00000025083 ENSMUST00000132851 Afap1l2 protein_coding Interval_40341 chr12 103996742 103997106 + 0 NA promoter-TSS (ENSMUSG00000093753.1) processed_transcript-promoter-TSS (ENSMUSG00000093753.1) -345 ENSMUSG00000093753.1 ENSMUSG00000093753 ENSMUST00000176106 Gm28577 processed_transcript Interval_124424 chr5 46005546 46006694 + 0 NA Intergenic Intergenic -73711 ENSMUSG00000106602.1 ENSMUSG00000106602 ENSMUST00000198088 4930405L22Rik lincRNA Interval_130161 chr5 124617885 124619357 + 0 NA TTS (ENSMUSG00000029386.15) protein_coding-TTS (ENSMUSG00000029386.15) -9955 ENSMUSG00000038023.12 ENSMUSG00000038023 ENSMUST00000197161 Atp6v0a2 protein_coding Interval_83497 chr18 87618213 87618526 + 0 NA Intergenic Intergenic 42161 ENSMUSG00000117683.1 ENSMUSG00000117683 ENSMUST00000237348 Gm50389 processed_pseudogene Interval_134361 chr6 26686432 26687395 + 0 NA Intergenic Intergenic -143504 ENSMUSG00000106742.1 ENSMUSG00000106742 ENSMUST00000201073 Gm42474 processed_pseudogene Interval_42501 chr13 14200430 14200673 + 0 NA TTS (ENSMUSG00000039219.18) protein_coding-TTS (ENSMUSG00000039219.18) 21387 ENSMUSG00000113563.1 ENSMUSG00000113563 ENSMUST00000221355 Gm2492 processed_pseudogene Interval_147401 chr7 66476162 66476393 + 0 NA Intergenic Intergenic 34391 ENSMUSG00000109114.1 ENSMUSG00000109114 ENSMUST00000208297 Gm44753 lincRNA Interval_84383 chr19 10524864 10526205 + 0 NA promoter-TSS (ENSMUSG00000024668.8) protein_coding-promoter-TSS (ENSMUSG00000024668.8) -412 ENSMUSG00000024668.8 ENSMUSG00000024668 ENSMUST00000236455 Sdhaf2 protein_coding Interval_61168 chr15 79629754 79630841 + 0 NA intron (ENSMUSG00000042564.13, intron 3 of 3) protein_coding-intron (ENSMUSG00000042564.13, intron 8 of 15) 28627 ENSMUSG00000042564.13 ENSMUSG00000042564 ENSMUST00000231126 Fam227a protein_coding Interval_81076 chr18 53671430 53672813 + 0 NA intron (ENSMUSG00000118362.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000118362.1, intron 1 of 2) 33015 ENSMUSG00000118362.1 ENSMUSG00000118362 ENSMUST00000235670 Gm19466 lincRNA Interval_114923 chr4 86992244 86992698 + 0 NA intron (ENSMUSG00000037996.17, intron 9 of 9) protein_coding-intron (ENSMUSG00000037996.17, intron 9 of 9) 61780 ENSMUSG00000038007.14 ENSMUSG00000038007 ENSMUST00000135874 Acer2 protein_coding Interval_97580 chr2 140096024 140097521 + 0 NA Intergenic Intergenic 13630 ENSMUSG00000083110.1 ENSMUSG00000083110 ENSMUST00000117344 Gm14073 processed_pseudogene Interval_54228 chr14 66581822 66582035 + 0 NA Intergenic Intergenic 9767 ENSMUSG00000088737.1 ENSMUSG00000088737 ENSMUST00000158112 Gm23899 rRNA Interval_170326 chr9 107089377 107090364 + 0 NA intron (ENSMUSG00000039716.12, intron 4 of 4) protein_coding-intron (ENSMUSG00000039716.12, intron 5 of 52) -7081 ENSMUSG00000064517.1 ENSMUSG00000064517 ENSMUST00000082583 Gm22454 snRNA Interval_97485 chr2 137217592 137217819 + 0 NA Intergenic Intergenic 18722 ENSMUSG00000099683.1 ENSMUSG00000099683 ENSMUST00000185663 Gm28214 lincRNA Interval_39009 chr12 84434545 84434853 + 0 NA TTS (ENSMUSG00000057265.13) protein_coding-TTS (ENSMUSG00000057265.13) 4480 ENSMUSG00000057265.13 ENSMUSG00000057265 ENSMUST00000221969 Bbof1 protein_coding Interval_54198 chr14 66182400 66183098 + 0 NA intron (ENSMUSG00000059456.13, intron 4 of 29) protein_coding-intron (ENSMUSG00000059456.13, intron 5 of 30) 30803 ENSMUSG00000059456.13 ENSMUSG00000059456 ENSMUST00000127083 Ptk2b protein_coding Interval_27587 chr11 68882202 68882533 + 0 NA Intergenic Intergenic -6186 ENSMUSG00000046490.7 ENSMUSG00000046490 ENSMUST00000065213 Rnf222 protein_coding Interval_17989 chr10 81259091 81259523 + 0 NA intron (ENSMUSG00000004933.17, intron 3 of 10) protein_coding-intron (ENSMUSG00000004933.17, intron 3 of 12) 1092 ENSMUSG00000004933.17 ENSMUSG00000004933 ENSMUST00000148735 Matk protein_coding Interval_123697 chr5 34580980 34582517 + 0 NA intron (ENSMUSG00000029106.14, intron 1 of 17) protein_coding-intron (ENSMUSG00000029106.14, intron 1 of 15) 6660 ENSMUSG00000107128.1 ENSMUSG00000107128 ENSMUST00000202995 Gm42867 TEC Interval_24659 chr11 35707349 35708154 + 0 NA intron (ENSMUSG00000056427.10, intron 35 of 35) protein_coding-intron (ENSMUSG00000056427.10, intron 35 of 35) -61733 ENSMUSG00000018846.8 ENSMUSG00000018846 ENSMUST00000018990 Pank3 protein_coding Interval_118784 chr4 133684554 133685640 + 0 NA exon (ENSMUSG00000007880.16, exon 18 of 20) protein_coding-exon (ENSMUSG00000007880.16, exon 18 of 20) -12450 ENSMUSG00000043257.15 ENSMUSG00000043257 ENSMUST00000151837 Pigv protein_coding Interval_48387 chr13 98678125 98678378 + 0 NA Intergenic Intergenic 16517 ENSMUSG00000052485.7 ENSMUSG00000052485 ENSMUST00000148950 Tmem171 protein_coding Interval_133927 chr6 15730958 15731713 + 0 NA intron (ENSMUSG00000041390.18, intron 3 of 8) protein_coding-intron (ENSMUSG00000041390.18, intron 2 of 4) 10674 ENSMUSG00000041390.18 ENSMUSG00000041390 ENSMUST00000128849 Mdfic protein_coding Interval_51786 chr14 32192549 32192914 + 0 NA promoter-TSS (ENSMUSG00000077611.1) snoRNA-promoter-TSS (ENSMUSG00000077611.1) -681 ENSMUSG00000077611.1 ENSMUSG00000077611 ENSMUST00000104423 Gm23946 snoRNA Interval_128146 chr5 111285290 111286703 + 0 NA exon (ENSMUSG00000033209.17, exon 24 of 24) protein_coding-exon (ENSMUSG00000033209.17, exon 24 of 24) -10902 ENSMUSG00000099130.1 ENSMUSG00000099130 ENSMUST00000183861 Gm27602 misc_RNA Interval_22651 chr11 12516284 12517519 + 0 NA Intergenic Intergenic -104757 ENSMUSG00000020173.17 ENSMUSG00000020173 ENSMUST00000146067 Cobl protein_coding Interval_94855 chr2 97614967 97615160 + 0 NA intron (ENSMUSG00000050587.14, intron 7 of 7) protein_coding-intron (ENSMUSG00000050587.14, intron 2 of 2) 11989 ENSMUSG00000105133.1 ENSMUSG00000105133 ENSMUST00000199276 Gm44320 miRNA Interval_83506 chr18 88480162 88480358 + 0 NA Intergenic Intergenic -65220 ENSMUSG00000117830.1 ENSMUSG00000117830 ENSMUST00000235625 Gm50400 processed_pseudogene Interval_64255 chr16 9865649 9866114 + 0 NA intron (ENSMUSG00000059003.12, intron 3 of 13) protein_coding-intron (ENSMUSG00000059003.12, intron 1 of 11) 129042 ENSMUSG00000059003.12 ENSMUSG00000059003 ENSMUST00000197242 Grin2a protein_coding Interval_77880 chr18 4993603 4994561 + 0 NA promoter-TSS (ENSMUSG00000024236.18) protein_coding-promoter-TSS (ENSMUSG00000024236.18) -41084 ENSMUSG00000024236.18 ENSMUSG00000024236 ENSMUST00000129543 Svil protein_coding Interval_24107 chr11 30363756 30364073 + 0 NA Intergenic Intergenic -95739 ENSMUSG00000020315.18 ENSMUSG00000020315 ENSMUST00000149117 Sptbn1 protein_coding Interval_132621 chr5 146780158 146780354 + 0 NA intron (ENSMUSG00000029640.17, intron 1 of 8) protein_coding-intron (ENSMUSG00000029640.17, intron 1 of 8) -15662 ENSMUSG00000104845.1 ENSMUSG00000104845 ENSMUST00000197536 1700041I07Rik lincRNA Interval_5653 chr1 90587979 90588976 + 0 NA Intergenic Intergenic -14999 ENSMUSG00000034432.11 ENSMUSG00000034432 ENSMUST00000186882 Cops8 protein_coding Interval_37095 chr12 57851254 57851452 + 0 NA Intergenic Intergenic -99858 ENSMUSG00000112704.1 ENSMUSG00000112704 ENSMUST00000218373 Gm46329 lincRNA Interval_70941 chr17 16461167 16461441 + 0 NA Intergenic Intergenic -95942 ENSMUSG00000116757.1 ENSMUSG00000116757 ENSMUST00000231695 Gm4786 processed_pseudogene Interval_49831 chr13 116794592 116795624 + 0 NA Intergenic Intergenic 43070 ENSMUSG00000114290.1 ENSMUSG00000114290 ENSMUST00000224552 4930435F18Rik lincRNA Interval_72666 chr17 31434473 31436838 + 0 NA promoter-TSS (ENSMUSG00000118157.1) antisense-promoter-TSS (ENSMUSG00000118157.1) -637 ENSMUSG00000118157.1 ENSMUSG00000118157 ENSMUST00000236083 Gm9902 antisense Interval_116410 chr4 111609878 111610101 + 0 NA intron (ENSMUSG00000061298.14, intron 1 of 3) protein_coding-intron (ENSMUSG00000061298.14, intron 9 of 12) 43294 ENSMUSG00000061298.14 ENSMUSG00000061298 ENSMUST00000142460 Agbl4 protein_coding Interval_35753 chr12 28887737 28887971 + 0 NA Intergenic Intergenic -1472 ENSMUSG00000113325.1 ENSMUSG00000113325 ENSMUST00000220624 Gm48080 processed_pseudogene Interval_122561 chr5 23816388 23816600 + 0 NA TTS (ENSMUSG00000028999.15) protein_coding-TTS (ENSMUSG00000028999.15) 7084 ENSMUSG00000118636.1 ENSMUSG00000118636 ENSMUST00000239171 AC117663.3 transcribed_unitary_pseudogene Interval_62245 chr15 89146184 89146974 + 0 NA intron (ENSMUSG00000053137.7, intron 2 of 9) protein_coding-intron (ENSMUSG00000053137.7, intron 2 of 11) 2915 ENSMUSG00000053137.7 ENSMUSG00000053137 ENSMUST00000228967 Mapk11 protein_coding Interval_77804 chr18 3821572 3822816 + 0 NA Intergenic Intergenic 36386 ENSMUSG00000117463.1 ENSMUSG00000117463 ENSMUST00000234895 Rpl7a-ps6 processed_pseudogene Interval_153361 chr7 143941902 143942672 + 0 NA Intergenic Intergenic 9172 ENSMUSG00000099321.1 ENSMUSG00000099321 ENSMUST00000183699 Mir6404 miRNA Interval_98789 chr2 154979877 154980787 + 0 NA intron (ENSMUSG00000027596.10, intron 3 of 4) protein_coding-intron (ENSMUSG00000027596.10, intron 1 of 3) -33140 ENSMUSG00000027596.10 ENSMUSG00000027596 ENSMUST00000148300 a protein_coding Interval_135793 chr6 47396112 47396700 + 0 NA Intergenic Intergenic 36683 ENSMUSG00000107853.1 ENSMUSG00000107853 ENSMUST00000203098 Gm18584 processed_pseudogene Interval_38396 chr12 78688021 78688487 + 0 NA Intergenic Intergenic -3428 ENSMUSG00000056987.8 ENSMUSG00000056987 ENSMUST00000219314 Fam71d protein_coding Interval_20780 chr10 120914924 120915197 + 0 NA Intergenic Intergenic -13126 ENSMUSG00000082936.1 ENSMUSG00000082936 ENSMUST00000118291 Gm16166 processed_pseudogene Interval_80527 chr18 43356764 43358263 + 0 NA intron (ENSMUSG00000024501.20, intron 4 of 13) protein_coding-intron (ENSMUSG00000024501.20, intron 4 of 13) 15710 ENSMUSG00000024501.20 ENSMUSG00000024501 ENSMUST00000118071 Dpysl3 protein_coding Interval_8559 chr1 142156411 142157218 + 0 NA Intergenic Intergenic 299000 ENSMUSG00000099671.2 ENSMUSG00000099671 ENSMUST00000191024 Gm18183 processed_pseudogene Interval_93512 chr2 73683766 73683976 + 0 NA intron (ENSMUSG00000056486.18, intron 5 of 9) protein_coding-intron (ENSMUSG00000056486.18, intron 5 of 12) 25601 ENSMUSG00000085838.1 ENSMUSG00000085838 ENSMUST00000123613 Chn1os1 antisense Interval_4580 chr1 75231847 75232162 + 0 NA promoter-TSS (ENSMUSG00000096094.2) protein_coding-promoter-TSS (ENSMUSG00000096094.2) 98 ENSMUSG00000096094.2 ENSMUSG00000096094 ENSMUST00000191271 A630095N17Rik protein_coding Interval_28402 chr11 75668520 75668741 + 0 NA intron (ENSMUSG00000017774.19, intron 19 of 20) protein_coding-intron (ENSMUSG00000017774.19, intron 19 of 31) -1646 ENSMUSG00000017774.19 ENSMUSG00000017774 ENSMUST00000155027 Myo1c protein_coding Interval_118375 chr4 130965254 130965518 + 0 NA Intergenic Intergenic -9404 ENSMUSG00000085804.1 ENSMUSG00000085804 ENSMUST00000143967 Gm12973 lincRNA Interval_171429 chr9 118228721 118229038 + 0 NA Intergenic Intergenic -58907 ENSMUSG00000084608.1 ENSMUSG00000084608 ENSMUST00000122659 Gm22198 misc_RNA Interval_156576 chr8 52835997 52836525 + 0 NA Intergenic Intergenic 62130 ENSMUSG00000109983.1 ENSMUSG00000109983 ENSMUST00000211275 Gm9685 processed_pseudogene Interval_108636 chr3 129683236 129683860 + 0 NA TTS (ENSMUSG00000092701.1) miRNA-TTS (ENSMUSG00000092701.1) 693 ENSMUSG00000092701.1 ENSMUSG00000092701 ENSMUST00000174960 Gm24515 miRNA Interval_99728 chr2 164534130 164534722 + 0 NA Intergenic Intergenic -16104 ENSMUSG00000086179.1 ENSMUSG00000086179 ENSMUST00000151754 Gm14317 lincRNA Interval_14040 chr10 25904173 25904485 + 0 NA TTS (ENSMUSG00000112324.1) lincRNA-TTS (ENSMUSG00000112324.1) 5050 ENSMUSG00000112324.1 ENSMUSG00000112324 ENSMUST00000219283 Gm47939 lincRNA Interval_100762 chr2 172412619 172413841 + 0 NA intron (ENSMUSG00000074570.14, intron 1 of 5) protein_coding-intron (ENSMUSG00000074570.14, intron 1 of 4) 19329 ENSMUSG00000074570.14 ENSMUSG00000074570 ENSMUST00000228775 Cass4 protein_coding Interval_37264 chr12 63807264 63807512 + 0 NA Intergenic Intergenic -120566 ENSMUSG00000113684.1 ENSMUSG00000113684 ENSMUST00000222419 Gm48418 processed_pseudogene Interval_54154 chr14 65777580 65779130 + 0 NA Intergenic Intergenic -27582 ENSMUSG00000022033.9 ENSMUSG00000022033 ENSMUST00000139644 Pbk protein_coding Interval_53519 chr14 58074667 58076837 + 0 NA promoter-TSS (ENSMUSG00000021974.15) protein_coding-promoter-TSS (ENSMUSG00000021974.15) -755 ENSMUSG00000021974.15 ENSMUSG00000021974 ENSMUST00000166770 Fgf9 protein_coding Interval_168498 chr9 82592386 82592609 + 0 NA Intergenic Intergenic 67506 ENSMUSG00000098420.1 ENSMUSG00000098420 ENSMUST00000185049 Gm27249 processed_pseudogene Interval_155732 chr8 36569587 36569807 + 0 NA TTS (ENSMUSG00000031523.16) protein_coding-TTS (ENSMUSG00000031523.16) 80506 ENSMUSG00000039620.17 ENSMUSG00000039620 ENSMUST00000125492 Trmt9b protein_coding Interval_42619 chr13 16921385 16921731 + 0 NA intron (ENSMUSG00000055137.7, intron 13 of 13) protein_coding-intron (ENSMUSG00000055137.7, intron 13 of 13) -16051 ENSMUSG00000113851.1 ENSMUSG00000113851 ENSMUST00000223465 Gm48503 antisense Interval_85190 chr19 23576629 23576956 + 0 NA intron (ENSMUSG00000033053.4, intron 4 of 5) protein_coding-intron (ENSMUSG00000033053.4, intron 4 of 5) -29106 ENSMUSG00000117944.1 ENSMUSG00000117944 ENSMUST00000237913 Gm50422 processed_pseudogene Interval_130963 chr5 134289720 134290441 + 0 NA intron (ENSMUSG00000060261.15, intron 3 of 4) protein_coding-intron (ENSMUSG00000060261.15, intron 3 of 34) 7094 ENSMUSG00000060261.15 ENSMUSG00000060261 ENSMUST00000202343 Gtf2i protein_coding Interval_149585 chr7 99839931 99840140 + 0 NA intron (ENSMUSG00000035227.7, intron 5 of 5) protein_coding-intron (ENSMUSG00000035227.7, intron 4 of 4) -11618 ENSMUSG00000035239.6 ENSMUSG00000035239 ENSMUST00000036331 Neu3 protein_coding Interval_108751 chr3 131048018 131048578 + 0 NA Intergenic Intergenic -21928 ENSMUSG00000104859.1 ENSMUSG00000104859 ENSMUST00000197848 A430072C10Rik TEC Interval_158657 chr8 84995627 84996290 + 0 NA intron (ENSMUSG00000052566.8, intron 11 of 15) protein_coding-intron (ENSMUSG00000052566.8, intron 11 of 21) 5316 ENSMUSG00000052566.8 ENSMUSG00000052566 ENSMUST00000209652 Hook2 protein_coding Interval_90468 chr2 30647061 30648302 + 0 NA intron (ENSMUSG00000086405.1, intron 2 of 3) lincRNA-intron (ENSMUSG00000086405.1, intron 2 of 3) 18026 ENSMUSG00000086405.1 ENSMUSG00000086405 ENSMUST00000146702 9330198N18Rik lincRNA Interval_785 chr1 11082091 11083068 + 0 NA intron (ENSMUSG00000048960.13, intron 5 of 39) protein_coding-intron (ENSMUSG00000048960.13, intron 5 of 39) 51659 ENSMUSG00000077318.1 ENSMUSG00000077318 ENSMUST00000104130 Gm24173 snoRNA Interval_123804 chr5 35627284 35627906 + 0 NA Intergenic Intergenic -38832 ENSMUSG00000055061.5 ENSMUSG00000055061 ENSMUST00000124643 4931431C16Rik antisense Interval_92360 chr2 59253797 59254148 + 0 NA intron (ENSMUSG00000026991.20, intron 1 of 20) protein_coding-intron (ENSMUSG00000026991.20, intron 2 of 21) 92045 ENSMUSG00000026991.20 ENSMUSG00000026991 ENSMUST00000124127 Pkp4 protein_coding Interval_160165 chr8 106870106 106873103 + 0 NA intron (ENSMUSG00000031910.14, intron 1 of 3) protein_coding-intron (ENSMUSG00000031910.14, intron 1 of 3) 768 ENSMUSG00000031910.14 ENSMUSG00000031910 ENSMUST00000175987 Has3 protein_coding Interval_156582 chr8 53065112 53065960 + 0 NA Intergenic Intergenic 59128 ENSMUSG00000088678.1 ENSMUSG00000088678 ENSMUST00000158053 Gm23666 snoRNA Interval_19391 chr10 98913873 98915839 + 0 NA promoter-TSS (ENSMUSG00000019943.10) protein_coding-promoter-TSS (ENSMUSG00000019943.10) -76024 ENSMUSG00000019943.10 ENSMUSG00000019943 ENSMUST00000218419 Atp2b1 protein_coding Interval_5591 chr1 90024303 90025324 + 0 NA Intergenic Intergenic -28361 ENSMUSG00000067081.13 ENSMUSG00000067081 ENSMUST00000151330 Asb18 protein_coding Interval_160337 chr8 108563289 108563756 + 0 NA intron (ENSMUSG00000110613.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000110613.1, intron 1 of 1) 21073 ENSMUSG00000110613.1 ENSMUSG00000110613 ENSMUST00000211953 Lncbate1 lincRNA Interval_108271 chr3 123173345 123174283 + 0 NA intron (ENSMUSG00000050315.14, intron 1 of 3) protein_coding-intron (ENSMUSG00000050315.14, intron 1 of 4) -9342 ENSMUSG00000105562.1 ENSMUSG00000105562 ENSMUST00000197747 Gm43287 TEC Interval_139895 chr6 112489016 112491194 + 0 NA promoter-TSS (ENSMUSG00000049112.9) protein_coding-promoter-TSS (ENSMUSG00000049112.9) -1711 ENSMUSG00000049112.9 ENSMUSG00000049112 ENSMUST00000204027 Oxtr protein_coding Interval_174370 chrX 150510632 150510858 + 0 NA Intergenic Intergenic 36700 ENSMUSG00000099172.1 ENSMUSG00000099172 ENSMUST00000184710 Mir3620 miRNA Interval_116036 chr4 107138912 107139696 + 0 NA TTS (ENSMUSG00000028619.15) protein_coding-TTS (ENSMUSG00000028619.15) 12691 ENSMUSG00000085304.1 ENSMUSG00000085304 ENSMUST00000145510 Gm12802 antisense Interval_100437 chr2 169008595 169008968 + 0 NA Intergenic Intergenic -11244 ENSMUSG00000052368.2 ENSMUSG00000052368 ENSMUST00000063891 Gm9873 lincRNA Interval_105905 chr3 89997838 89999402 + 0 NA promoter-TSS (ENSMUSG00000027944.13) protein_coding-promoter-TSS (ENSMUSG00000027944.13) -258 ENSMUSG00000027944.13 ENSMUSG00000027944 ENSMUST00000199740 Hax1 protein_coding Interval_153384 chr7 144248559 144249501 + 0 NA intron (ENSMUSG00000037541.22, intron 1 of 12) protein_coding-intron (ENSMUSG00000037541.22, intron 4 of 15) 10305 ENSMUSG00000037541.22 ENSMUSG00000037541 ENSMUST00000136979 Shank2 protein_coding Interval_87112 chr19 46195078 46195274 + 0 NA intron (ENSMUSG00000025224.16, intron 3 of 18) protein_coding-intron (ENSMUSG00000025224.16, intron 3 of 39) 10682 ENSMUSG00000093525.1 ENSMUSG00000093525 ENSMUST00000175770 Gm8974 processed_pseudogene Interval_121177 chr4 153812024 153813016 + 0 NA Intergenic Intergenic -63864 ENSMUSG00000077519.1 ENSMUSG00000077519 ENSMUST00000104331 Gm25880 snoRNA Interval_43927 chr13 38104778 38105580 + 0 NA Intergenic Intergenic 18977 ENSMUSG00000098481.1 ENSMUSG00000098481 ENSMUST00000184583 Gm27387 miRNA Interval_36827 chr12 54423972 54425833 + 0 NA Intergenic Intergenic -3175 ENSMUSG00000112204.1 ENSMUSG00000112204 ENSMUST00000219134 Gm47553 processed_pseudogene Interval_150418 chr7 110272063 110272647 + 0 NA intron (ENSMUSG00000031015.8, intron 7 of 11) protein_coding-intron (ENSMUSG00000031015.8, intron 7 of 11) 9172 ENSMUSG00000109799.1 ENSMUSG00000109799 ENSMUST00000210796 Gm45515 antisense Interval_48373 chr13 98587871 98589527 + 0 NA Intergenic Intergenic -24802 ENSMUSG00000114733.1 ENSMUSG00000114733 ENSMUST00000223936 Gm4815 processed_pseudogene Interval_16295 chr10 62029353 62029802 + 0 NA Intergenic Intergenic 6173 ENSMUSG00000112018.1 ENSMUSG00000112018 ENSMUST00000220135 Gm47919 TEC Interval_120989 chr4 152078978 152079731 + 0 NA TTS (ENSMUSG00000039713.17) protein_coding-TTS (ENSMUSG00000039713.17) 3068 ENSMUSG00000039713.17 ENSMUSG00000039713 ENSMUST00000142412 Plekhg5 protein_coding Interval_122823 chr5 25775260 25775555 + 0 NA intron (ENSMUSG00000056367.14, intron 1 of 10) protein_coding-intron (ENSMUSG00000056367.14, intron 1 of 11) 15368 ENSMUSG00000056367.14 ENSMUSG00000056367 ENSMUST00000198693 Actr3b protein_coding Interval_166585 chr9 61101540 61102776 + 0 NA TTS (ENSMUSG00000111354.1) lincRNA-TTS (ENSMUSG00000111354.1) 3227 ENSMUSG00000111807.1 ENSMUSG00000111807 ENSMUST00000217392 4933433G08Rik lincRNA Interval_8651 chr1 146312419 146312629 + 0 NA Intergenic Intergenic -107912 ENSMUSG00000090323.2 ENSMUSG00000090323 ENSMUST00000163646 Gm5263 processed_pseudogene Interval_11423 chr1 181862661 181863622 + 0 NA Intergenic Intergenic -9952 ENSMUSG00000056699.7 ENSMUSG00000056699 ENSMUST00000070987 Gm5533 lincRNA Interval_61456 chr15 81744808 81746234 + 0 NA promoter-TSS (ENSMUSG00000022391.16) protein_coding-promoter-TSS (ENSMUSG00000022391.16) 9 ENSMUSG00000022391.16 ENSMUSG00000022391 ENSMUST00000230726 Rangap1 protein_coding Interval_97214 chr2 132284795 132286662 + 0 NA promoter-TSS (ENSMUSG00000058793.14) protein_coding-promoter-TSS (ENSMUSG00000058793.14) 22487 ENSMUSG00000058793.14 ENSMUSG00000058793 ENSMUST00000138194 Cds2 protein_coding Interval_94416 chr2 91064183 91064510 + 0 NA promoter-TSS (ENSMUSG00000002105.15) protein_coding-promoter-TSS (ENSMUSG00000002105.15) 5841 ENSMUSG00000002105.15 ENSMUSG00000002105 ENSMUST00000133047 Slc39a13 protein_coding Interval_104412 chr3 65420927 65421131 + 0 NA Intergenic Intergenic 27692 ENSMUSG00000048916.7 ENSMUSG00000048916 ENSMUST00000131852 Gm5540 processed_pseudogene Interval_169036 chr9 90693175 90693364 + 0 NA Intergenic Intergenic 40255 ENSMUSG00000099366.1 ENSMUSG00000099366 ENSMUST00000189539 Gm2497 processed_pseudogene Interval_113728 chr4 57877922 57878338 + 0 NA promoter-TSS (ENSMUSG00000096195.1) snRNA-promoter-TSS (ENSMUSG00000096195.1) -635 ENSMUSG00000096195.1 ENSMUSG00000096195 ENSMUST00000179236 Gm26138 snRNA Interval_162501 chr9 3376052 3377006 + 0 NA intron (ENSMUSG00000025899.14, intron 11 of 12) protein_coding-intron (ENSMUSG00000025899.14, intron 10 of 11) -2678 ENSMUSG00000025899.14 ENSMUSG00000025899 ENSMUST00000212955 Alkbh8 protein_coding Interval_37337 chr12 65206095 65207193 + 0 NA intron (ENSMUSG00000113233.1, intron 1 of 3) lincRNA-intron (ENSMUSG00000113233.1, intron 1 of 3) 6857 ENSMUSG00000113233.1 ENSMUSG00000113233 ENSMUST00000222636 Gm31063 lincRNA Interval_89349 chr2 19621901 19622940 + 0 NA Intergenic Intergenic 14566 ENSMUSG00000086621.1 ENSMUSG00000086621 ENSMUST00000147324 Gm13348 antisense Interval_109729 chr3 146355832 146356998 + 0 NA Intergenic Intergenic 22529 ENSMUSG00000105602.1 ENSMUSG00000105602 ENSMUST00000197639 Gm10636 lincRNA Interval_105754 chr3 89152390 89153189 + 0 NA exon (ENSMUSG00000028051.10, exon 2 of 8) protein_coding-exon (ENSMUSG00000028051.10, exon 2 of 8) 7191 ENSMUSG00000028051.10 ENSMUSG00000028051 ENSMUST00000133368 Hcn3 protein_coding Interval_162474 chr8 129233800 129234770 + 0 NA promoter-TSS (ENSMUSG00000071302.10) protein_coding-promoter-TSS (ENSMUSG00000071302.10) -272 ENSMUSG00000071302.10 ENSMUSG00000071302 ENSMUST00000189965 2610044O15Rik8 protein_coding Interval_62897 chr15 97784066 97784939 + 0 NA promoter-TSS (ENSMUSG00000081534.3) protein_coding-promoter-TSS (ENSMUSG00000081534.3) 5982 ENSMUSG00000081534.3 ENSMUSG00000081534 ENSMUST00000229084 Slc48a1 protein_coding Interval_61897 chr15 85011828 85012995 + 0 NA Intergenic Intergenic 4013 ENSMUSG00000116464.1 ENSMUSG00000116464 ENSMUST00000230801 Gm49523 processed_pseudogene Interval_81912 chr18 65794945 65795564 + 0 NA Intergenic Intergenic -5301 ENSMUSG00000024516.13 ENSMUSG00000024516 ENSMUST00000235765 Sec11c protein_coding Interval_29177 chr11 81077633 81078519 + 0 NA intron (ENSMUSG00000085130.1, intron 2 of 2) protein_coding-intron (ENSMUSG00000020704.13, intron 1 of 9) 5673 ENSMUSG00000085130.1 ENSMUSG00000085130 ENSMUST00000150536 Gm11417 antisense Interval_127234 chr5 101720310 101721534 + 0 NA Intergenic Intergenic -16859 ENSMUSG00000105097.1 ENSMUSG00000105097 ENSMUST00000196076 Gm42133 lincRNA Interval_163941 chr9 29433361 29434498 + 0 NA intron (ENSMUSG00000059974.10, intron 1 of 2) protein_coding-intron (ENSMUSG00000059974.10, intron 1 of 7) 158581 ENSMUSG00000085638.1 ENSMUSG00000085638 ENSMUST00000141752 Gm15521 sense_intronic Interval_111386 chr4 20111655 20112222 + 0 NA Intergenic Intergenic 69886 ENSMUSG00000073987.4 ENSMUSG00000073987 ENSMUST00000098242 Ggh protein_coding Interval_77019 chr17 85675025 85675493 + 0 NA Intergenic Intergenic 13015 ENSMUSG00000024134.11 ENSMUSG00000024134 ENSMUST00000024947 Six2 protein_coding Interval_37516 chr12 69514721 69516098 + 0 NA Intergenic Intergenic -39862 ENSMUSG00000113035.1 ENSMUSG00000113035 ENSMUST00000222980 5830428M24Rik processed_transcript Interval_173859 chrX 106026480 106027562 + 0 NA promoter-TSS (ENSMUSG00000033792.12) protein_coding-promoter-TSS (ENSMUSG00000033792.12) 7630 ENSMUSG00000031231.4 ENSMUSG00000031231 ENSMUST00000155377 Cox7b protein_coding Interval_150804 chr7 114783383 114783798 + 0 NA intron (ENSMUSG00000048782.15, intron 2 of 2) protein_coding-intron (ENSMUSG00000048782.15, intron 2 of 12) -10378 ENSMUSG00000048782.15 ENSMUSG00000048782 ENSMUST00000206274 Insc protein_coding Interval_168623 chr9 84375543 84376848 + 0 NA Intergenic Intergenic 10360 ENSMUSG00000111616.1 ENSMUSG00000111616 ENSMUST00000215826 Gm18487 processed_pseudogene Interval_48547 chr13 100023390 100024090 + 0 NA exon (ENSMUSG00000049658.13, exon 38 of 39) protein_coding-exon (ENSMUSG00000049658.13, exon 38 of 39) 42711 ENSMUSG00000049658.13 ENSMUSG00000049658 ENSMUST00000163097 Bdp1 protein_coding Interval_111406 chr4 20972026 20973756 + 0 NA Intergenic Intergenic 38049 ENSMUSG00000083315.1 ENSMUSG00000083315 ENSMUST00000122429 Gm11871 processed_pseudogene Interval_136418 chr6 54283012 54283955 + 0 NA intron (ENSMUSG00000004633.17, intron 1 of 5) protein_coding-intron (ENSMUSG00000004633.17, intron 7 of 12) 10575 ENSMUSG00000004633.17 ENSMUSG00000004633 ENSMUST00000204746 Chn2 protein_coding Interval_82356 chr18 72350529 72351323 + 0 NA promoter-TSS (ENSMUSG00000060534.16) protein_coding-promoter-TSS (ENSMUSG00000060534.16) 115 ENSMUSG00000060534.16 ENSMUSG00000060534 ENSMUST00000126030 Dcc protein_coding Interval_173384 chrX 86180812 86181677 + 0 NA Intergenic Intergenic -10520 ENSMUSG00000025056.4 ENSMUSG00000025056 ENSMUST00000026036 Nr0b1 protein_coding Interval_99298 chr2 158767520 158769063 + 0 NA exon (ENSMUSG00000027654.2, exon 1 of 4) protein_coding-exon (ENSMUSG00000027654.2, exon 1 of 4) -13117 ENSMUSG00000027654.2 ENSMUSG00000027654 ENSMUST00000151801 Fam83d protein_coding Interval_21882 chr11 4949376 4949655 + 0 NA Intergenic Intergenic -1451 ENSMUSG00000020396.8 ENSMUSG00000020396 ENSMUST00000093369 Nefh protein_coding Interval_152504 chr7 133636833 133638295 + 0 NA promoter-TSS (ENSMUSG00000039990.16) protein_coding-promoter-TSS (ENSMUSG00000039990.16) -9839 ENSMUSG00000101546.1 ENSMUSG00000101546 ENSMUST00000185366 Gm28747 lincRNA Interval_63764 chr15 103293636 103293983 + 0 NA intron (ENSMUSG00000060992.9, intron 4 of 7) protein_coding-intron (ENSMUSG00000060992.9, intron 4 of 8) -7256 ENSMUSG00000116308.1 ENSMUSG00000116308 ENSMUST00000231068 Gm49482 antisense Interval_157946 chr8 77123660 77124521 + 0 NA intron (ENSMUSG00000031618.13, intron 2 of 7) protein_coding-intron (ENSMUSG00000031618.13, intron 2 of 7) 22390 ENSMUSG00000089309.1 ENSMUSG00000089309 ENSMUST00000158684 Gm24838 snoRNA Interval_827 chr1 12060584 12060932 + 0 NA Intergenic Intergenic -60202 ENSMUSG00000101610.1 ENSMUSG00000101610 ENSMUST00000187748 Gm7560 processed_pseudogene Interval_71842 chr17 26462489 26462924 + 0 NA intron (ENSMUSG00000118232.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000118232.1, intron 1 of 1) 1451 ENSMUSG00000118232.1 ENSMUSG00000118232 ENSMUST00000236943 Gm50269 lincRNA Interval_100186 chr2 167537668 167538472 + 0 NA promoter-TSS (ENSMUSG00000042821.7) protein_coding-promoter-TSS (ENSMUSG00000042821.7) -125 ENSMUSG00000042821.7 ENSMUSG00000042821 ENSMUST00000052631 Snai1 protein_coding Interval_62016 chr15 85900966 85901394 + 0 NA exon (ENSMUSG00000016028.11, exon 34 of 35) protein_coding-exon (ENSMUSG00000016028.11, exon 34 of 35) 1019 ENSMUSG00000016028.11 ENSMUSG00000016028 ENSMUST00000227450 Celsr1 protein_coding Interval_129104 chr5 117423075 117423267 + 0 NA intron (ENSMUSG00000061578.8, intron 1 of 20) protein_coding-intron (ENSMUSG00000061578.8, intron 1 of 3) 9171 ENSMUSG00000061578.8 ENSMUSG00000061578 ENSMUST00000180430 Ksr2 protein_coding Interval_148553 chr7 82530871 82531736 + 0 NA intron (ENSMUSG00000070469.12, intron 15 of 29) protein_coding-intron (ENSMUSG00000070469.12, intron 15 of 29) 117193 ENSMUSG00000038570.15 ENSMUSG00000038570 ENSMUST00000126478 Saxo2 protein_coding Interval_42089 chr13 8532814 8533490 + 0 NA intron (ENSMUSG00000052551.16, intron 1 of 10) protein_coding-intron (ENSMUSG00000052551.16, intron 1 of 9) -19868 ENSMUSG00000113742.1 ENSMUSG00000113742 ENSMUST00000220604 Gm48262 TEC Interval_57852 chr15 23278573 23278863 + 0 NA intron (ENSMUSG00000040420.15, intron 3 of 10) protein_coding-intron (ENSMUSG00000040420.15, intron 4 of 9) 105267 ENSMUSG00000040420.15 ENSMUSG00000040420 ENSMUST00000167623 Cdh18 protein_coding Interval_129295 chr5 118737363 118738186 + 0 NA intron (ENSMUSG00000018076.12, intron 14 of 30) protein_coding-intron (ENSMUSG00000018076.12, intron 14 of 30) -12613 ENSMUSG00000018076.12 ENSMUSG00000018076 ENSMUST00000202787 Med13l protein_coding Interval_153377 chr7 144182983 144183209 + 0 NA intron (ENSMUSG00000037541.22, intron 11 of 17) protein_coding-intron (ENSMUSG00000037541.22, intron 2 of 15) -55629 ENSMUSG00000037541.22 ENSMUSG00000037541 ENSMUST00000136979 Shank2 protein_coding Interval_36642 chr12 51708838 51709508 + 0 NA intron (ENSMUSG00000020955.9, intron 1 of 5) protein_coding-intron (ENSMUSG00000020955.9, intron 1 of 5) 18140 ENSMUSG00000020955.9 ENSMUSG00000020955 ENSMUST00000021338 Ap4s1 protein_coding Interval_28572 chr11 76801612 76802489 + 0 NA intron (ENSMUSG00000020841.5, intron 9 of 20) protein_coding-intron (ENSMUSG00000020841.5, intron 9 of 20) -11028 ENSMUSG00000020841.5 ENSMUSG00000020841 ENSMUST00000132796 Cpd protein_coding Interval_97276 chr2 132863812 132864011 + 0 NA intron (ENSMUSG00000027357.16, intron 5 of 6) protein_coding-intron (ENSMUSG00000027357.16, intron 5 of 6) 16173 ENSMUSG00000027357.16 ENSMUSG00000027357 ENSMUST00000154160 Crls1 protein_coding Interval_156146 chr8 45110527 45111339 + 0 NA intron (ENSMUSG00000110260.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000110260.1, intron 1 of 2) 25766 ENSMUSG00000054764.9 ENSMUSG00000054764 ENSMUST00000209488 Mtnr1a protein_coding Interval_48577 chr13 100436955 100438849 + 0 NA intron (ENSMUSG00000021640.6, intron 4 of 15) protein_coding-intron (ENSMUSG00000021640.6, intron 3 of 14) 14962 ENSMUSG00000021640.6 ENSMUSG00000021640 ENSMUST00000221727 Naip1 protein_coding Interval_49141 chr13 108413423 108414160 + 0 NA Intergenic Intergenic 56365 ENSMUSG00000021697.12 ENSMUSG00000021697 ENSMUST00000172402 Depdc1b protein_coding Interval_143869 chr7 16854707 16855199 + 0 NA TTS (ENSMUSG00000041187.16) protein_coding-TTS (ENSMUSG00000041187.16) -8394 ENSMUSG00000041187.16 ENSMUSG00000041187 ENSMUST00000205798 Prkd2 protein_coding Interval_29987 chr11 88552830 88553643 + 0 NA intron (ENSMUSG00000069769.13, intron 1 of 5) protein_coding-intron (ENSMUSG00000069769.13, intron 6 of 13) 36911 ENSMUSG00000069769.13 ENSMUSG00000069769 ENSMUST00000126293 Msi2 protein_coding Interval_39021 chr12 84523127 84523877 + 0 NA intron (ENSMUSG00000085793.2, intron 4 of 4) protein_coding-intron (ENSMUSG00000085793.2, intron 5 of 5) -6542 ENSMUSG00000085793.2 ENSMUSG00000085793 ENSMUST00000222741 Lin52 protein_coding Interval_170370 chr9 107504808 107505567 + 0 NA promoter-TSS (ENSMUSG00000010066.15) protein_coding-promoter-TSS (ENSMUSG00000010066.15) -16325 ENSMUSG00000010066.15 ENSMUSG00000010066 ENSMUST00000168959 Cacna2d2 protein_coding Interval_72586 chr17 30839506 30839900 + 0 NA intron (ENSMUSG00000033826.10, intron 85 of 90) protein_coding-intron (ENSMUSG00000033826.10, intron 87 of 92) 17733 ENSMUSG00000117760.1 ENSMUSG00000117760 ENSMUST00000237260 Gm41561 antisense Interval_21552 chr10 129816985 129817212 + 0 NA Intergenic Intergenic -12702 ENSMUSG00000063173.2 ENSMUSG00000063173 ENSMUST00000076437 Olfr811 protein_coding Interval_17714 chr10 79712100 79713088 + 0 NA TTS (ENSMUSG00000023175.15) protein_coding-TTS (ENSMUSG00000023175.15) 2489 ENSMUSG00000023175.15 ENSMUSG00000023175 ENSMUST00000180235 Bsg protein_coding Interval_145349 chr7 34154848 34155714 + 0 NA intron (ENSMUSG00000052997.15, intron 4 of 5) protein_coding-intron (ENSMUSG00000052997.15, intron 9 of 16) 9060 ENSMUSG00000052997.15 ENSMUSG00000052997 ENSMUST00000206651 Uba2 protein_coding Interval_162994 chr9 14342082 14343173 + 0 NA intron (ENSMUSG00000111555.1, intron 2 of 2) lincRNA-intron (ENSMUSG00000111555.1, intron 2 of 2) 7015 ENSMUSG00000111555.1 ENSMUSG00000111555 ENSMUST00000216728 Gm47326 lincRNA Interval_144106 chr7 19443045 19443915 + 0 NA intron (ENSMUSG00000030397.11, intron 7 of 17) protein_coding-intron (ENSMUSG00000030397.11, intron 7 of 16) 15341 ENSMUSG00000030397.11 ENSMUSG00000030397 ENSMUST00000209011 Mark4 protein_coding Interval_106490 chr3 96669627 96670526 + 0 NA promoter-TSS (ENSMUSG00000038354.13) protein_coding-promoter-TSS (ENSMUSG00000038354.13) -3094 ENSMUSG00000105144.1 ENSMUSG00000105144 ENSMUST00000077278 Rpl21-ps11 processed_pseudogene Interval_88166 chr19 60179324 60179620 + 0 NA Intergenic Intergenic 27945 ENSMUSG00000053117.11 ENSMUSG00000053117 ENSMUST00000235893 E330013P04Rik lincRNA Interval_44797 chr13 48705882 48706764 + 0 NA Intergenic Intergenic 43325 ENSMUSG00000021381.4 ENSMUSG00000021381 ENSMUST00000021813 Barx1 protein_coding Interval_105884 chr3 89912417 89913772 + 0 NA promoter-TSS (ENSMUSG00000027947.11) protein_coding-promoter-TSS (ENSMUSG00000027947.11) 102 ENSMUSG00000027947.11 ENSMUSG00000027947 ENSMUST00000029559 Il6ra protein_coding Interval_19400 chr10 98956218 98957916 + 0 NA intron (ENSMUSG00000019943.10, intron 1 of 8) protein_coding-intron (ENSMUSG00000019943.10, intron 1 of 20) -33813 ENSMUSG00000019943.10 ENSMUSG00000019943 ENSMUST00000218419 Atp2b1 protein_coding Interval_20941 chr10 122544065 122544501 + 0 NA intron (ENSMUSG00000112873.1, intron 1 of 2) antisense-intron (ENSMUSG00000112873.1, intron 1 of 2) 2215 ENSMUSG00000112873.1 ENSMUSG00000112873 ENSMUST00000218285 Gm48877 antisense Interval_610 chr1 8913653 8914114 + 0 NA intron (ENSMUSG00000025909.16, intron 3 of 20) protein_coding-intron (ENSMUSG00000025909.16, intron 3 of 19) 38539 ENSMUSG00000025909.16 ENSMUSG00000025909 ENSMUST00000126083 Sntg1 protein_coding Interval_118639 chr4 132936924 132937354 + 0 NA Intergenic Intergenic -5822 ENSMUSG00000087911.1 ENSMUSG00000087911 ENSMUST00000157286 Gm24913 snRNA Interval_88081 chr19 58903359 58904474 + 0 NA intron (ENSMUSG00000025092.7, intron 2 of 6) protein_coding-intron (ENSMUSG00000025092.7, intron 2 of 6) 7843 ENSMUSG00000092813.1 ENSMUSG00000092813 ENSMUST00000175072 Mir3086 miRNA Interval_173766 chrX 103694518 103696585 + 0 NA Intergenic Intergenic 10903 ENSMUSG00000033965.10 ENSMUSG00000033965 ENSMUST00000148684 Slc16a2 protein_coding Interval_78773 chr18 20557706 20558661 + 0 NA promoter-TSS (ENSMUSG00000044393.15) protein_coding-promoter-TSS (ENSMUSG00000044393.15) -63 ENSMUSG00000044393.15 ENSMUSG00000044393 ENSMUST00000121837 Dsg2 protein_coding Interval_2879 chr1 47207256 47207809 + 0 NA Intergenic Intergenic 54071 ENSMUSG00000101447.1 ENSMUSG00000101447 ENSMUST00000190006 Gm28826 lincRNA Interval_84443 chr19 10936063 10936298 + 0 NA promoter-TSS (ENSMUSG00000034117.3) protein_coding-promoter-TSS (ENSMUSG00000034117.3) -980 ENSMUSG00000034117.3 ENSMUSG00000034117 ENSMUST00000037261 Ptgdr2 protein_coding Interval_70559 chr17 12029328 12029902 + 0 NA promoter-TSS (ENSMUSG00000023826.16) protein_coding-promoter-TSS (ENSMUSG00000023826.16) -89714 ENSMUSG00000023827.8 ENSMUSG00000023827 ENSMUST00000167905 Agpat4 protein_coding Interval_110388 chr3 157636867 157637330 + 0 NA intron (ENSMUSG00000040016.16, intron 2 of 2) protein_coding-intron (ENSMUSG00000040016.16, intron 2 of 2) 70198 ENSMUSG00000040016.16 ENSMUSG00000040016 ENSMUST00000173533 Ptger3 protein_coding Interval_149576 chr7 99774252 99774618 + 0 NA Intergenic Intergenic 7104 ENSMUSG00000053360.4 ENSMUSG00000053360 ENSMUST00000065741 F730035P03Rik lincRNA Interval_71808 chr17 26226077 26226378 + 0 NA intron (ENSMUSG00000024187.15, intron 1 of 12) protein_coding-intron (ENSMUSG00000024187.15, intron 1 of 12) 2516 ENSMUSG00000117513.1 ENSMUSG00000117513 ENSMUST00000234719 Gm3946 processed_pseudogene Interval_83316 chr18 84117082 84117300 + 0 NA Intergenic Intergenic -5283 ENSMUSG00000117915.1 ENSMUSG00000117915 ENSMUST00000238103 Gm50309 lincRNA Interval_130455 chr5 127756848 127757300 + 0 NA Intergenic Intergenic -120259 ENSMUSG00000061331.5 ENSMUSG00000061331 ENSMUST00000109542 Gm17132 unprocessed_pseudogene Interval_39848 chr12 99052580 99052885 + 0 NA intron (ENSMUSG00000114089.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000114089.1, intron 1 of 1) 5502 ENSMUSG00000062582.6 ENSMUSG00000062582 ENSMUST00000076166 Rpl30-ps8 processed_pseudogene Interval_76682 chr17 83452537 83452936 + 0 NA intron (ENSMUSG00000032624.16, intron 13 of 22) protein_coding-intron (ENSMUSG00000032624.16, intron 11 of 20) -3565 ENSMUSG00000032624.16 ENSMUSG00000032624 ENSMUST00000235121 Eml4 protein_coding Interval_66016 chr16 30971755 30972494 + 0 NA intron (ENSMUSG00000087605.1, intron 1 of 1) protein_coding-intron (ENSMUSG00000047434.14, intron 3 of 3) 1394 ENSMUSG00000087605.1 ENSMUSG00000087605 ENSMUST00000123905 Gm15742 sense_intronic Interval_143232 chr7 4646865 4647634 + 0 NA intron (ENSMUSG00000052296.7, intron 1 of 3) protein_coding-intron (ENSMUSG00000052296.7, intron 1 of 23) -3965 ENSMUSG00000052296.7 ENSMUSG00000052296 ENSMUST00000205374 Ppp6r1 protein_coding Interval_97866 chr2 144576731 144577434 + 0 NA promoter-TSS (ENSMUSG00000027429.16) protein_coding-promoter-TSS (ENSMUSG00000027429.16) -16972 ENSMUSG00000074754.4 ENSMUSG00000074754 ENSMUST00000136628 Smim26 protein_coding Interval_112792 chr4 45028994 45029831 + 0 NA exon (ENSMUSG00000028318.14, exon 11 of 14) protein_coding-exon (ENSMUSG00000028318.14, exon 11 of 14) -1850 ENSMUSG00000028318.14 ENSMUSG00000028318 ENSMUST00000153252 Polr1e protein_coding Interval_74822 chr17 56736498 56737280 + 0 NA intron (ENSMUSG00000117146.2, intron 1 of 1) transcribed_processed_pseudogene-intron (ENSMUSG00000117146.2, intron 1 of 1) 2661 ENSMUSG00000117146.2 ENSMUSG00000117146 ENSMUST00000233424 Fut4-ps1 transcribed_processed_pseudogene Interval_125214 chr5 65401211 65402228 + 0 NA intron (ENSMUSG00000029199.11, intron 7 of 10) protein_coding-intron (ENSMUSG00000029199.11, intron 7 of 10) -4032 ENSMUSG00000106291.1 ENSMUSG00000106291 ENSMUST00000199441 1110003F10Rik TEC Interval_165727 chr9 51924120 51924802 + 0 NA intron (ENSMUSG00000111836.1, intron 2 of 2) lincRNA-intron (ENSMUSG00000111836.1, intron 2 of 2) 7200 ENSMUSG00000111357.1 ENSMUSG00000111357 ENSMUST00000214327 Gm6980 lincRNA Interval_51243 chr14 25500648 25501025 + 0 NA intron (ENSMUSG00000007817.15, intron 1 of 23) protein_coding-intron (ENSMUSG00000007817.15, intron 1 of 23) 20782 ENSMUSG00000114539.1 ENSMUSG00000114539 ENSMUST00000224666 Gm47921 sense_intronic Interval_85487 chr19 27399419 27399622 + 0 NA promoter-TSS (ENSMUSG00000041360.8) protein_coding-promoter-TSS (ENSMUSG00000041360.8) 20579 ENSMUSG00000041360.8 ENSMUSG00000041360 ENSMUST00000236702 Pum3 protein_coding Interval_25361 chr11 46660344 46660612 + 0 NA Intergenic Intergenic -13519 ENSMUSG00000080970.1 ENSMUSG00000080970 ENSMUST00000117622 Gm12173 unprocessed_pseudogene Interval_31768 chr11 102734874 102735221 + 0 NA intron (ENSMUSG00000086162.1, intron 1 of 10) unitary_pseudogene-intron (ENSMUSG00000086162.1, intron 1 of 10) 2642 ENSMUSG00000086162.1 ENSMUSG00000086162 ENSMUST00000124025 Gm16342 unitary_pseudogene Interval_127012 chr5 99578642 99579161 + 0 NA intron (ENSMUSG00000089809.9, intron 1 of 2) protein_coding-intron (ENSMUSG00000089809.9, intron 1 of 1) 32532 ENSMUSG00000089627.1 ENSMUSG00000089627 ENSMUST00000162286 Gm16228 processed_pseudogene Interval_100262 chr2 168036917 168037304 + 0 NA Intergenic Intergenic 26581 ENSMUSG00000086411.1 ENSMUSG00000086411 ENSMUST00000142374 Gm14236 antisense Interval_99089 chr2 157102164 157102561 + 0 NA TTS (ENSMUSG00000027639.16) protein_coding-TTS (ENSMUSG00000027639.16) 8250 ENSMUSG00000027639.16 ENSMUSG00000027639 ENSMUST00000152866 Samhd1 protein_coding Interval_49614 chr13 113558816 113559047 + 0 NA intron (ENSMUSG00000114715.1, intron 1 of 5) lincRNA-intron (ENSMUSG00000114715.1, intron 1 of 5) 8836 ENSMUSG00000114715.1 ENSMUSG00000114715 ENSMUST00000225395 Gm34471 lincRNA Interval_21856 chr11 4766211 4767430 + 0 NA TTS (ENSMUSG00000009073.16) protein_coding-TTS (ENSMUSG00000009073.16) -20042 ENSMUSG00000009075.2 ENSMUSG00000009075 ENSMUST00000009219 Cabp7 protein_coding Interval_69648 chr16 94835364 94836902 + 0 NA intron (ENSMUSG00000043301.16, intron 2 of 2) protein_coding-intron (ENSMUSG00000043301.16, intron 2 of 4) 20539 ENSMUSG00000043301.16 ENSMUSG00000043301 ENSMUST00000231744 Kcnj6 protein_coding Interval_125589 chr5 72258784 72259654 + 0 NA intron (ENSMUSG00000046808.17, intron 10 of 22) polymorphic_pseudogene-intron (ENSMUSG00000046808.17, intron 10 of 22) 46243 ENSMUSG00000089195.1 ENSMUSG00000089195 ENSMUST00000158570 Gm25768 snRNA Interval_34974 chr12 16015058 16015913 + 0 NA promoter-TSS (ENSMUSG00000113930.1) lincRNA-promoter-TSS (ENSMUSG00000113930.1) 60 ENSMUSG00000113930.1 ENSMUSG00000113930 ENSMUST00000223158 Gm36235 lincRNA Interval_114653 chr4 83485728 83486989 + 0 NA promoter-TSS (ENSMUSG00000028484.16) protein_coding-promoter-TSS (ENSMUSG00000028484.16) 14403 ENSMUSG00000082416.1 ENSMUSG00000082416 ENSMUST00000121795 Gm11414 processed_pseudogene Interval_61155 chr15 79527840 79529103 + 0 NA TTS (ENSMUSG00000010830.8) protein_coding-TTS (ENSMUSG00000010830.8) 12060 ENSMUSG00000010830.8 ENSMUSG00000010830 ENSMUST00000010974 Kdelr3 protein_coding Interval_78513 chr18 13924287 13925779 + 0 NA intron (ENSMUSG00000024420.9, intron 2 of 2) protein_coding-intron (ENSMUSG00000024420.9, intron 3 of 7) -21563 ENSMUSG00000117600.1 ENSMUSG00000117600 ENSMUST00000234954 Gm50094 TEC Interval_112281 chr4 39910621 39910822 + 0 NA Intergenic Intergenic -14559 ENSMUSG00000084220.1 ENSMUSG00000084220 ENSMUST00000118573 Gm12387 processed_pseudogene Interval_140580 chr6 119811738 119812213 + 0 NA intron (ENSMUSG00000030172.15, intron 2 of 19) protein_coding-intron (ENSMUSG00000030172.15, intron 1 of 18) -80945 ENSMUSG00000080719.1 ENSMUSG00000080719 ENSMUST00000121192 Gm15532 processed_pseudogene Interval_37904 chr12 72962689 72963541 + 0 NA intron (ENSMUSG00000097010.2, intron 3 of 3) lincRNA-intron (ENSMUSG00000097010.2, intron 1 of 1) 12220 ENSMUSG00000102197.1 ENSMUSG00000102197 ENSMUST00000195404 Gm38170 TEC Interval_84609 chr19 14398374 14399165 + 0 NA Intergenic Intergenic 196770 ENSMUSG00000024642.17 ENSMUSG00000024642 ENSMUST00000235975 Tle4 protein_coding Interval_14108 chr10 27508080 27508293 + 0 NA intron (ENSMUSG00000019899.17, intron 1 of 1) protein_coding-intron (ENSMUSG00000019899.17, intron 1 of 64) 55897 ENSMUSG00000089050.1 ENSMUSG00000089050 ENSMUST00000158425 Gm23353 snoRNA Interval_169997 chr9 103494265 103494942 + 0 NA promoter-TSS (ENSMUSG00000042757.16) protein_coding-promoter-TSS (ENSMUSG00000042757.16) 5277 ENSMUSG00000085168.2 ENSMUSG00000085168 ENSMUST00000215604 Gm16252 antisense Interval_83465 chr18 86170479 86170837 + 0 NA Intergenic Intergenic 72862 ENSMUSG00000118283.1 ENSMUSG00000118283 ENSMUST00000238105 Gm7623 processed_pseudogene Interval_54395 chr14 68337709 68339082 + 0 NA Intergenic Intergenic 120142 ENSMUSG00000114925.1 ENSMUSG00000114925 ENSMUST00000223651 Gm47212 lincRNA Interval_42417 chr13 13400149 13400370 + 0 NA Intergenic Intergenic -2577 ENSMUSG00000088470.1 ENSMUSG00000088470 ENSMUST00000157845 Gm23081 misc_RNA Interval_55059 chr14 77569235 77569462 + 0 NA intron (ENSMUSG00000022012.9, intron 6 of 6) protein_coding-intron (ENSMUSG00000022012.9, intron 7 of 18) -3508 ENSMUSG00000022012.9 ENSMUSG00000022012 ENSMUST00000228845 Enox1 protein_coding Interval_58468 chr15 34898936 34900598 + 0 NA intron (ENSMUSG00000022329.15, intron 10 of 10) protein_coding-intron (ENSMUSG00000022329.15, intron 10 of 10) 60470 ENSMUSG00000022329.15 ENSMUSG00000022329 ENSMUST00000138841 Stk3 protein_coding Interval_50278 chr14 11594387 11594878 + 0 NA intron (ENSMUSG00000021745.14, intron 1 of 3) protein_coding-intron (ENSMUSG00000021745.14, intron 1 of 29) -73862 ENSMUSG00000114849.1 ENSMUSG00000114849 ENSMUST00000224543 Gm48595 lincRNA Interval_174281 chrX 143080978 143081226 + 0 NA Intergenic Intergenic -18492 ENSMUSG00000085584.3 ENSMUSG00000085584 ENSMUST00000165829 Rtl9 protein_coding Interval_94398 chr2 90744531 90746076 + 0 NA promoter-TSS (ENSMUSG00000008200.15) protein_coding-promoter-TSS (ENSMUSG00000008200.15) -67 ENSMUSG00000008200.15 ENSMUSG00000008200 ENSMUST00000123955 Fnbp4 protein_coding Interval_102464 chr3 27027814 27028338 + 0 NA Intergenic Intergenic -1521 ENSMUSG00000105670.1 ENSMUSG00000105670 ENSMUST00000198010 Gm44464 miRNA Interval_96649 chr2 126779962 126780986 + 0 NA exon (ENSMUSG00000027364.14, exon 2 of 7) protein_coding-exon (ENSMUSG00000027364.14, exon 2 of 7) 2984 ENSMUSG00000027364.14 ENSMUSG00000027364 ENSMUST00000151140 Usp50 protein_coding Interval_23148 chr11 20178139 20179302 + 0 NA Intergenic Intergenic 16015 ENSMUSG00000084442.1 ENSMUSG00000084442 ENSMUST00000122493 Gm26253 snRNA Interval_119822 chr4 140213717 140213913 + 0 NA intron (ENSMUSG00000040972.8, intron 1 of 9) protein_coding-intron (ENSMUSG00000040972.8, intron 1 of 9) 32969 ENSMUSG00000040972.8 ENSMUSG00000040972 ENSMUST00000039331 Igsf21 protein_coding Interval_70655 chr17 12847893 12848229 + 0 NA promoter-TSS (ENSMUSG00000068037.11) protein_coding-promoter-TSS (ENSMUSG00000068037.11) 6399 ENSMUSG00000068037.11 ENSMUSG00000068037 ENSMUST00000159865 Mas1 protein_coding Interval_55666 chr14 98619817 98620909 + 0 NA Intergenic Intergenic -3827 ENSMUSG00000096444.1 ENSMUSG00000096444 ENSMUST00000180098 Gm26139 snRNA Interval_45742 chr13 57540516 57540792 + 0 NA intron (ENSMUSG00000056222.15, intron 6 of 10) protein_coding-intron (ENSMUSG00000056222.15, intron 4 of 9) 263976 ENSMUSG00000114411.1 ENSMUSG00000114411 ENSMUST00000224461 Gm48176 processed_pseudogene Interval_77782 chr18 3462124 3462644 + 0 NA Intergenic Intergenic 4118 ENSMUSG00000117389.1 ENSMUSG00000117389 ENSMUST00000234592 Gm50088 processed_pseudogene Interval_60705 chr15 76268900 76270024 + 0 NA intron (ENSMUSG00000115946.2, intron 1 of 2) protein_coding-intron (ENSMUSG00000049653.5, intron 1 of 4) -1195 ENSMUSG00000115946.2 ENSMUSG00000115946 ENSMUST00000232408 Mirt2 antisense Interval_143372 chr7 6202568 6203044 + 0 NA promoter-TSS (ENSMUSG00000034660.8) protein_coding-promoter-TSS (ENSMUSG00000034660.8) 5 ENSMUSG00000034660.8 ENSMUSG00000034660 ENSMUST00000130076 Galp protein_coding Interval_106332 chr3 95419344 95419537 + 0 NA Intergenic Intergenic -4015 ENSMUSG00000104646.1 ENSMUSG00000104646 ENSMUST00000198054 Gm9173 processed_pseudogene Interval_83550 chr18 89182309 89182501 + 0 NA intron (ENSMUSG00000034028.16, intron 1 of 1) protein_coding-intron (ENSMUSG00000034028.16, intron 1 of 7) -15077 ENSMUSG00000034028.16 ENSMUSG00000034028 ENSMUST00000236835 Cd226 protein_coding Interval_23002 chr11 18747496 18748365 + 0 NA Intergenic Intergenic 8808 ENSMUSG00000099449.1 ENSMUSG00000099449 ENSMUST00000188856 Gm28401 lincRNA Interval_49132 chr13 108335781 108336497 + 0 NA intron (ENSMUSG00000021697.12, intron 1 of 4) protein_coding-intron (ENSMUSG00000021697.12, intron 2 of 10) -19866 ENSMUSG00000090358.1 ENSMUSG00000090358 ENSMUST00000164299 Gm2822 processed_transcript Interval_5829 chr1 92308884 92309080 + 0 NA Intergenic Intergenic -15528 ENSMUSG00000101265.1 ENSMUSG00000101265 ENSMUST00000187370 Gm29099 lincRNA Interval_4465 chr1 74369759 74370565 + 0 NA TTS (ENSMUSG00000073650.8) protein_coding-TTS (ENSMUSG00000073650.8) -5033 ENSMUSG00000026177.11 ENSMUSG00000026177 ENSMUST00000134189 Slc11a1 protein_coding Interval_52875 chr14 51434500 51435495 + 0 NA intron (ENSMUSG00000068399.5, intron 3 of 6) protein_coding-intron (ENSMUSG00000068399.5, intron 3 of 6) 6234 ENSMUSG00000115374.1 ENSMUSG00000115374 ENSMUST00000161721 Vmn2r-ps111 transcribed_unprocessed_pseudogene Interval_28791 chr11 78347485 78348177 + 0 NA promoter-TSS (ENSMUSG00000002058.13) protein_coding-promoter-TSS (ENSMUSG00000002058.13) 920 ENSMUSG00000002058.13 ENSMUSG00000002058 ENSMUST00000125720 Unc119 protein_coding Interval_118987 chr4 134869726 134870681 + 0 NA intron (ENSMUSG00000028825.7, intron 1 of 9) protein_coding-intron (ENSMUSG00000028825.7, intron 1 of 9) -9607 ENSMUSG00000028825.7 ENSMUSG00000028825 ENSMUST00000136163 Rhd protein_coding Interval_40633 chr12 106138391 106139147 + 0 NA intron (ENSMUSG00000114149.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000114149.1, intron 1 of 1) 6631 ENSMUSG00000114149.1 ENSMUSG00000114149 ENSMUST00000223462 Gm47646 lincRNA Interval_54493 chr14 70207994 70208488 + 0 NA promoter-TSS (ENSMUSG00000022091.6) protein_coding-promoter-TSS (ENSMUSG00000022091.6) 2917 ENSMUSG00000115186.1 ENSMUSG00000115186 ENSMUST00000226259 Gm49417 antisense Interval_59950 chr15 62161735 62163731 + 0 NA intron (ENSMUSG00000097039.8, intron 4 of 8) lincRNA-intron (ENSMUSG00000097039.8, intron 4 of 8) -12689 ENSMUSG00000098595.1 ENSMUSG00000098595 ENSMUST00000184054 Gm27957 misc_RNA Interval_156713 chr8 57530092 57531402 + 0 NA intron (ENSMUSG00000031608.13, intron 5 of 5) protein_coding-intron (ENSMUSG00000031608.13, intron 11 of 11) -9861 ENSMUSG00000109899.1 ENSMUSG00000109899 ENSMUST00000210821 Gm6012 processed_pseudogene Interval_9613 chr1 160231247 160232110 + 0 NA intron (ENSMUSG00000026721.16, intron 6 of 6) protein_coding-intron (ENSMUSG00000026721.16, intron 7 of 8) 18735 ENSMUSG00000103006.1 ENSMUSG00000103006 ENSMUST00000193962 4933417C20Rik TEC Interval_114321 chr4 72678571 72680256 + 0 NA Intergenic Intergenic 136747 ENSMUSG00000083372.1 ENSMUSG00000083372 ENSMUST00000117763 Gm11235 processed_pseudogene Interval_153003 chr7 140799605 140800209 + 0 NA Intergenic Intergenic -12070 ENSMUSG00000025480.5 ENSMUSG00000025480 ENSMUST00000211616 Syce1 protein_coding Interval_126669 chr5 91949332 91950030 + 0 NA exon (ENSMUSG00000029397.15, exon 9 of 9) protein_coding-exon (ENSMUSG00000029397.15, exon 9 of 9) 9281 ENSMUSG00000107200.1 ENSMUSG00000107200 ENSMUST00000202883 Gm43039 TEC Interval_28549 chr11 76657316 76658270 + 0 NA Intergenic Intergenic -14677 ENSMUSG00000044243.3 ENSMUSG00000044243 ENSMUST00000056184 Bhlha9 protein_coding Interval_59274 chr15 50664337 50665313 + 0 NA intron (ENSMUSG00000038679.16, intron 7 of 8) protein_coding-intron (ENSMUSG00000038679.16, intron 5 of 6) 224289 ENSMUSG00000084458.1 ENSMUSG00000084458 ENSMUST00000122509 Mir1907 miRNA Interval_105465 chr3 86812606 86813246 + 0 NA intron (ENSMUSG00000028078.14, intron 8 of 15) protein_coding-intron (ENSMUSG00000028078.14, intron 8 of 15) -34273 ENSMUSG00000104108.1 ENSMUSG00000104108 ENSMUST00000194490 Gm37876 antisense Interval_166875 chr9 63593153 63593550 + 0 NA intron (ENSMUSG00000037801.13, intron 3 of 20) protein_coding-intron (ENSMUSG00000037801.13, intron 3 of 21) 9066 ENSMUSG00000037801.13 ENSMUSG00000037801 ENSMUST00000170960 Iqch protein_coding Interval_101730 chr3 9223516 9225103 + 0 NA Intergenic Intergenic -26293 ENSMUSG00000069114.8 ENSMUSG00000069114 ENSMUST00000155203 Zbtb10 protein_coding Interval_48647 chr13 100823065 100824060 + 0 NA exon (ENSMUSG00000021629.10, exon 1 of 1) protein_coding-exon (ENSMUSG00000021629.10, exon 1 of 1) 9778 ENSMUSG00000021629.10 ENSMUSG00000021629 ENSMUST00000224177 Slc30a5 protein_coding Interval_143108 chr6 149392788 149393385 + 0 NA Intergenic Intergenic -8707 ENSMUSG00000081335.1 ENSMUSG00000081335 ENSMUST00000121079 Gm15786 processed_pseudogene Interval_168357 chr9 79455066 79456122 + 0 NA intron (ENSMUSG00000111765.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000111765.1, intron 1 of 2) -60125 ENSMUSG00000111560.1 ENSMUSG00000111560 ENSMUST00000215133 Gm35262 processed_pseudogene Interval_133276 chr5 151029176 151029422 + 0 NA Intergenic Intergenic -19998 ENSMUSG00000106963.1 ENSMUSG00000106963 ENSMUST00000201408 Gm8675 processed_pseudogene Interval_70787 chr17 14519956 14520862 + 0 NA Intergenic Intergenic 70838 ENSMUSG00000116801.1 ENSMUSG00000116801 ENSMUST00000232609 Gm38551 lincRNA Interval_67025 chr16 41046241 41046480 + 0 NA intron (ENSMUSG00000061080.11, intron 2 of 8) protein_coding-intron (ENSMUSG00000061080.11, intron 2 of 8) 20216 ENSMUSG00000099168.1 ENSMUSG00000099168 ENSMUST00000183933 Gm27717 misc_RNA Interval_157113 chr8 65347573 65348195 + 0 NA Intergenic Intergenic -19417 ENSMUSG00000064905.1 ENSMUSG00000064905 ENSMUST00000082971 Gm25403 misc_RNA Interval_84039 chr19 6893972 6894384 + 0 NA Intergenic Intergenic 15352 ENSMUSG00000024953.17 ENSMUSG00000024953 ENSMUST00000173091 Prdx5 protein_coding Interval_161799 chr8 122870053 122872287 + 0 NA intron (ENSMUSG00000110440.1, intron 1 of 1) protein_coding-intron (ENSMUSG00000092329.1, intron 1 of 15) 621 ENSMUSG00000110440.1 ENSMUSG00000110440 ENSMUST00000212728 Gm45894 antisense Interval_174760 chrX 165701261 165701844 + 0 NA Intergenic Intergenic 15963 ENSMUSG00000064497.1 ENSMUSG00000064497 ENSMUST00000082563 Gm22062 snRNA Interval_148799 chr7 88004256 88004739 + 0 NA intron (ENSMUSG00000049583.15, intron 3 of 8) protein_coding-intron (ENSMUSG00000049583.15, intron 3 of 7) -58564 ENSMUSG00000109461.1 ENSMUSG00000109461 ENSMUST00000207808 Gm44848 TEC Interval_75070 chr17 62879712 62883994 + 0 NA promoter-TSS (ENSMUSG00000048915.12) protein_coding-promoter-TSS (ENSMUSG00000048915.12) -709 ENSMUSG00000048915.12 ENSMUSG00000048915 ENSMUST00000078839 Efna5 protein_coding Interval_146416 chr7 45770476 45771426 + 0 NA intron (ENSMUSG00000003271.17, intron 1 of 6) protein_coding-intron (ENSMUSG00000003271.17, intron 1 of 6) 13516 ENSMUSG00000003271.17 ENSMUSG00000003271 ENSMUST00000211779 Sult2b1 protein_coding Interval_25256 chr11 45915503 45916640 + 0 NA Intergenic Intergenic 28864 ENSMUSG00000044847.13 ENSMUSG00000044847 ENSMUST00000062458 Lsm11 protein_coding Interval_113556 chr4 56638882 56640521 + 0 NA Intergenic Intergenic 39334 ENSMUSG00000077663.1 ENSMUSG00000077663 ENSMUST00000104475 Gm26144 snoRNA Interval_97721 chr2 143370034 143370344 + 0 NA Intergenic Intergenic 20677 ENSMUSG00000083787.1 ENSMUSG00000083787 ENSMUST00000119735 Gm11644 processed_pseudogene Interval_80303 chr18 38992529 38994219 + 0 NA promoter-TSS (ENSMUSG00000036452.18) protein_coding-promoter-TSS (ENSMUSG00000036452.18) 818 ENSMUSG00000086991.1 ENSMUSG00000086991 ENSMUST00000131421 Gm15334 antisense Interval_12783 chr10 5328698 5328980 + 0 NA intron (ENSMUSG00000096054.3, intron 37 of 145) protein_coding-intron (ENSMUSG00000096054.3, intron 37 of 145) -28334 ENSMUSG00000094906.1 ENSMUSG00000094906 ENSMUST00000104408 Gm23573 snRNA Interval_117860 chr4 126700373 126700638 + 0 NA intron (ENSMUSG00000028837.8, intron 3 of 4) protein_coding-intron (ENSMUSG00000028837.8, intron 3 of 5) 22801 ENSMUSG00000028837.8 ENSMUSG00000028837 ENSMUST00000150372 Psmb2 protein_coding Interval_171997 chr9 123329970 123330985 + 0 NA Intergenic Intergenic -22508 ENSMUSG00000058492.5 ENSMUSG00000058492 ENSMUST00000072166 Scp2-ps2 transcribed_unprocessed_pseudogene Interval_174716 chrX 164041929 164042190 + 0 NA Intergenic Intergenic -14078 ENSMUSG00000031373.4 ENSMUSG00000031373 ENSMUST00000126650 Car5b protein_coding Interval_14641 chr10 37506307 37507158 + 0 NA Intergenic Intergenic -54052 ENSMUSG00000111549.1 ENSMUSG00000111549 ENSMUST00000215235 Gm48172 processed_pseudogene Interval_109979 chr3 152285472 152285796 + 0 NA promoter-TSS (ENSMUSG00000054942.13) protein_coding-promoter-TSS (ENSMUSG00000054942.13) -19866 ENSMUSG00000039103.12 ENSMUSG00000039103 ENSMUST00000199752 Nexn protein_coding Interval_53266 chr14 55688663 55688926 + 0 NA intron (ENSMUSG00000115154.1, intron 2 of 2) antisense-intron (ENSMUSG00000115154.1, intron 2 of 2) -4877 ENSMUSG00000088402.1 ENSMUSG00000088402 ENSMUST00000157777 Gm25887 snRNA Interval_4582 chr1 75244513 75245455 + 0 NA TTS (ENSMUSG00000026203.16) protein_coding-TTS (ENSMUSG00000026203.16) 3575 ENSMUSG00000026203.16 ENSMUSG00000026203 ENSMUST00000190445 Dnajb2 protein_coding Interval_83923 chr19 5622481 5624983 + 0 NA Intergenic Intergenic -14212 ENSMUSG00000024927.8 ENSMUSG00000024927 ENSMUST00000237361 Rela protein_coding Interval_129895 chr5 122961281 122962553 + 0 NA intron (ENSMUSG00000029475.17, intron 4 of 10) protein_coding-intron (ENSMUSG00000029475.17, intron 4 of 22) -27437 ENSMUSG00000056735.5 ENSMUSG00000056735 ENSMUST00000148466 A930024E05Rik antisense Interval_162991 chr9 14303201 14303494 + 0 NA intron (ENSMUSG00000032009.8, intron 1 of 3) protein_coding-intron (ENSMUSG00000032009.8, intron 1 of 9) 28280 ENSMUSG00000032009.8 ENSMUSG00000032009 ENSMUST00000208142 Sesn3 protein_coding Interval_138608 chr6 90393038 90393321 + 0 NA intron (ENSMUSG00000034430.16, intron 7 of 9) protein_coding-intron (ENSMUSG00000034430.16, intron 7 of 9) 6372 ENSMUSG00000108181.1 ENSMUSG00000108181 ENSMUST00000203368 C030015A19Rik TEC Interval_108171 chr3 122140588 122141118 + 0 NA intron (ENSMUSG00000028125.14, intron 7 of 26) protein_coding-intron (ENSMUSG00000028125.14, intron 30 of 49) 11766 ENSMUSG00000105351.1 ENSMUSG00000105351 ENSMUST00000198223 Gm43157 processed_pseudogene Interval_87852 chr19 56572348 56572559 + 0 NA intron (ENSMUSG00000025078.9, intron 1 of 5) protein_coding-intron (ENSMUSG00000025078.9, intron 3 of 10) 1656 ENSMUSG00000025078.9 ENSMUSG00000025078 ENSMUST00000236979 Nhlrc2 protein_coding Interval_105228 chr3 84011907 84012380 + 0 NA intron (ENSMUSG00000033767.14, intron 3 of 33) protein_coding-intron (ENSMUSG00000033767.14, intron 3 of 33) 51309 ENSMUSG00000103261.1 ENSMUSG00000103261 ENSMUST00000192340 Gm36981 TEC Interval_68509 chr16 78294980 78295274 + 0 NA promoter-TSS (ENSMUSG00000109841.2) processed_transcript-promoter-TSS (ENSMUSG00000109841.2) -140 ENSMUSG00000109841.2 ENSMUSG00000109841 ENSMUST00000210555 E330011O21Rik processed_transcript Interval_170152 chr9 105620001 105621207 + 0 NA Intergenic Intergenic 52947 ENSMUSG00000084659.1 ENSMUSG00000084659 ENSMUST00000122710 Gm22720 snRNA Interval_84886 chr19 18618414 18618913 + 0 NA intron (ENSMUSG00000024725.13, intron 1 of 10) protein_coding-intron (ENSMUSG00000024725.13, intron 1 of 9) 13126 ENSMUSG00000024725.13 ENSMUSG00000024725 ENSMUST00000138860 Ostf1 protein_coding Interval_143764 chr7 16174573 16176051 + 0 NA promoter-TSS (ENSMUSG00000041420.18) protein_coding-promoter-TSS (ENSMUSG00000041420.18) -2434 ENSMUSG00000041420.18 ENSMUSG00000041420 ENSMUST00000176714 Meis3 protein_coding Interval_89266 chr2 18647205 18647780 + 0 NA Intergenic Intergenic 1854 ENSMUSG00000086882.4 ENSMUSG00000086882 ENSMUST00000117515 Gm13352 processed_pseudogene Interval_80238 chr18 38465504 38466014 + 0 NA TTS (ENSMUSG00000024425.4) protein_coding-TTS (ENSMUSG00000024425.4) 14449 ENSMUSG00000024425.4 ENSMUSG00000024425 ENSMUST00000238135 Ndfip1 protein_coding Interval_96247 chr2 120952537 120952936 + 0 NA intron (ENSMUSG00000027272.5, intron 4 of 8) protein_coding-intron (ENSMUSG00000027272.5, intron 4 of 46) -22394 ENSMUSG00000027272.5 ENSMUSG00000027272 ENSMUST00000138824 Ubr1 protein_coding Interval_77885 chr18 5020325 5020604 + 0 NA intron (ENSMUSG00000024236.18, intron 1 of 37) protein_coding-intron (ENSMUSG00000024236.18, intron 1 of 37) -14702 ENSMUSG00000024236.18 ENSMUSG00000024236 ENSMUST00000129543 Svil protein_coding Interval_114429 chr4 76130735 76131309 + 0 NA intron (ENSMUSG00000028399.18, intron 9 of 30) protein_coding-intron (ENSMUSG00000028399.18, intron 8 of 29) -46565 ENSMUSG00000028399.18 ENSMUSG00000028399 ENSMUST00000134604 Ptprd protein_coding Interval_142152 chr6 137648179 137649869 + 0 NA promoter-TSS (ENSMUSG00000015766.14) protein_coding-promoter-TSS (ENSMUSG00000015766.14) -55449 ENSMUSG00000107878.1 ENSMUSG00000107878 ENSMUST00000203153 Gm44106 TEC Interval_151215 chr7 119759278 119759981 + 0 NA Intergenic Intergenic 6952 ENSMUSG00000108915.1 ENSMUSG00000108915 ENSMUST00000208096 Gm44966 processed_pseudogene Interval_143895 chr7 16993512 16994714 + 0 NA exon (ENSMUSG00000041117.8, exon 1 of 1) protein_coding-exon (ENSMUSG00000041117.8, exon 1 of 1) 1405 ENSMUSG00000041117.8 ENSMUSG00000041117 ENSMUST00000094805 Ccdc8 protein_coding Interval_74445 chr17 50677457 50678512 + 0 NA intron (ENSMUSG00000038910.7, intron 5 of 5) protein_coding-intron (ENSMUSG00000038910.7, intron 5 of 5) -20704 ENSMUSG00000044645.8 ENSMUSG00000044645 ENSMUST00000061681 Gm7334 processed_pseudogene Interval_95595 chr2 112617141 112617628 + 0 NA intron (ENSMUSG00000003604.14, intron 1 of 4) protein_coding-intron (ENSMUSG00000003604.14, intron 2 of 5) 3354 ENSMUSG00000105420.1 ENSMUSG00000105420 ENSMUST00000199821 Gm44374 miRNA Interval_106378 chr3 95758939 95759125 + 0 NA intron (ENSMUSG00000028107.14, intron 1 of 2) protein_coding-intron (ENSMUSG00000028107.14, intron 1 of 2) -16886 ENSMUSG00000028107.14 ENSMUSG00000028107 ENSMUST00000197501 Tars2 protein_coding Interval_108559 chr3 128946270 128946654 + 0 NA Intergenic Intergenic 8636 ENSMUSG00000074236.3 ENSMUSG00000074236 ENSMUST00000098624 Gm9387 processed_pseudogene Interval_73216 chr17 35626406 35626969 + 0 NA promoter-TSS (ENSMUSG00000090588.2) protein_coding-promoter-TSS (ENSMUSG00000090588.2) -77 ENSMUSG00000090588.2 ENSMUSG00000090588 ENSMUST00000173759 Gm9573 protein_coding Interval_21576 chr10 130174756 130175221 + 0 NA Intergenic Intergenic -8222 ENSMUSG00000058084.5 ENSMUSG00000058084 ENSMUST00000076814 Olfr825 protein_coding Interval_105975 chr3 90388773 90390658 + 0 NA promoter-TSS (ENSMUSG00000027932.14) protein_coding-promoter-TSS (ENSMUSG00000027932.14) -734 ENSMUSG00000027932.14 ENSMUSG00000027932 ENSMUST00000127064 Slc27a3 protein_coding Interval_81782 chr18 64633617 64633880 + 0 NA intron (ENSMUSG00000039529.9, intron 1 of 4) protein_coding-intron (ENSMUSG00000039529.9, intron 1 of 27) -20649 ENSMUSG00000118133.1 ENSMUSG00000118133 ENSMUST00000238142 Gm6978 transcribed_processed_pseudogene Interval_86153 chr19 37109197 37109531 + 0 NA intron (ENSMUSG00000039652.16, intron 4 of 10) protein_coding-intron (ENSMUSG00000039652.16, intron 4 of 10) 39798 ENSMUSG00000080544.1 ENSMUSG00000080544 ENSMUST00000116894 Gm22714 ribozyme Interval_155144 chr8 27023302 27024309 + 0 NA promoter-TSS (ENSMUSG00000031483.8) protein_coding-promoter-TSS (ENSMUSG00000031483.8) -3712 ENSMUSG00000110081.1 ENSMUSG00000110081 ENSMUST00000210667 Gm19164 processed_pseudogene Interval_39716 chr12 94854751 94855316 + 0 NA Intergenic Intergenic -40552 ENSMUSG00000113139.1 ENSMUSG00000113139 ENSMUST00000222320 Gm48011 processed_pseudogene Interval_124598 chr5 52170965 52171370 + 0 NA intron (ENSMUSG00000029169.11, intron 4 of 13) protein_coding-intron (ENSMUSG00000029169.11, intron 4 of 13) 4588 ENSMUSG00000106607.1 ENSMUSG00000106607 ENSMUST00000197257 Gm43178 TEC Interval_142966 chr6 147565417 147565591 + 0 NA intron (ENSMUSG00000030301.17, intron 7 of 12) protein_coding-intron (ENSMUSG00000030301.17, intron 7 of 12) -34195 ENSMUSG00000107793.1 ENSMUSG00000107793 ENSMUST00000203567 4933406L23Rik TEC Interval_15312 chr10 44434850 44435486 + 0 NA Intergenic Intergenic -10844 ENSMUSG00000111078.1 ENSMUSG00000111078 ENSMUST00000215400 Gm35028 lincRNA Interval_158109 chr8 78784076 78784334 + 0 NA Intergenic Intergenic -5988 ENSMUSG00000109768.1 ENSMUSG00000109768 ENSMUST00000209348 Gm45446 processed_pseudogene Interval_160835 chr8 113489169 113490619 + 0 NA Intergenic Intergenic 29712 ENSMUSG00000077289.1 ENSMUSG00000077289 ENSMUST00000104101 Gm25766 snoRNA Interval_40297 chr12 103301634 103302375 + 0 NA Intergenic Intergenic -8971 ENSMUSG00000096753.7 ENSMUSG00000096753 ENSMUST00000179363 Fam181a protein_coding Interval_76447 chr17 80254378 80256016 + 0 NA intron (ENSMUSG00000035051.15, intron 14 of 15) protein_coding-intron (ENSMUSG00000035051.15, intron 13 of 22) 8095 ENSMUSG00000117440.1 ENSMUSG00000117440 ENSMUST00000234217 Gm50087 antisense Interval_54301 chr14 67344682 67345028 + 0 NA intron (ENSMUSG00000093472.1, intron 5 of 5) protein_coding-intron (ENSMUSG00000022053.13, intron 7 of 16) -8927 ENSMUSG00000093386.1 ENSMUSG00000093386 ENSMUST00000177127 1700120O09Rik processed_transcript Interval_21988 chr11 5600448 5600690 + 0 NA intron (ENSMUSG00000020481.15, intron 10 of 25) protein_coding-intron (ENSMUSG00000020481.15, intron 8 of 26) 26486 ENSMUSG00000020481.15 ENSMUSG00000020481 ENSMUST00000137933 Ankrd36 protein_coding Interval_11631 chr1 183504258 183504486 + 0 NA Intergenic Intergenic -59140 ENSMUSG00000103451.1 ENSMUSG00000103451 ENSMUST00000195148 Gm33973 lincRNA Interval_100729 chr2 172160321 172160597 + 0 NA Intergenic Intergenic -16323 ENSMUSG00000105205.1 ENSMUSG00000105205 ENSMUST00000200362 Gm44301 miRNA Interval_23710 chr11 25003104 25003308 + 0 NA Intergenic Intergenic -77156 ENSMUSG00000087145.7 ENSMUSG00000087145 ENSMUST00000126063 Gm12665 lincRNA Interval_30009 chr11 88669286 88669530 + 0 NA intron (ENSMUSG00000069769.13, intron 5 of 5) protein_coding-intron (ENSMUSG00000069769.13, intron 5 of 13) -49237 ENSMUSG00000087574.1 ENSMUSG00000087574 ENSMUST00000125967 C030037D09Rik lincRNA Interval_61443 chr15 81661910 81662124 + 0 NA Intergenic Intergenic -5618 ENSMUSG00000116516.1 ENSMUSG00000116516 ENSMUST00000230244 Gm49444 processed_pseudogene Interval_38944 chr12 84009088 84010183 + 0 NA promoter-TSS (ENSMUSG00000072949.6) protein_coding-promoter-TSS (ENSMUSG00000072949.6) -500 ENSMUSG00000072949.6 ENSMUSG00000072949 ENSMUST00000220901 Acot1 protein_coding Interval_132219 chr5 143410450 143411138 + 0 NA intron (ENSMUSG00000079111.3, intron 1 of 4) protein_coding-intron (ENSMUSG00000079111.3, intron 1 of 4) 6956 ENSMUSG00000079111.3 ENSMUSG00000079111 ENSMUST00000110731 Kdelr2 protein_coding Interval_57162 chr15 7089894 7090902 + 0 NA promoter-TSS (ENSMUSG00000054263.12) protein_coding-promoter-TSS (ENSMUSG00000054263.12) -216 ENSMUSG00000054263.12 ENSMUSG00000054263 ENSMUST00000171588 Lifr protein_coding Interval_19016 chr10 93810514 93810748 + 0 NA Intergenic Intergenic 3333 ENSMUSG00000096598.1 ENSMUSG00000096598 ENSMUST00000178842 Gm26239 snRNA Interval_15021 chr10 41986144 41986809 + 0 NA TTS (ENSMUSG00000071324.11) protein_coding-TTS (ENSMUSG00000071324.11) -31740 ENSMUSG00000111103.1 ENSMUSG00000111103 ENSMUST00000214172 1700016J18Rik bidirectional_promoter_lncRNA Interval_110784 chr4 8367137 8368434 + 0 NA Intergenic Intergenic 86462 ENSMUSG00000103127.1 ENSMUSG00000103127 ENSMUST00000194755 Gm37386 TEC Interval_76493 chr17 80574729 80578450 + 0 NA intron (ENSMUSG00000033966.8, intron 1 of 9) protein_coding-intron (ENSMUSG00000033966.8, intron 1 of 9) 1224 ENSMUSG00000033966.8 ENSMUSG00000033966 ENSMUST00000234349 Cdkl4 protein_coding Interval_116986 chr4 118686304 118687620 + 0 NA TTS (ENSMUSG00000043383.5) protein_coding-TTS (ENSMUSG00000043383.5) 5794 ENSMUSG00000043383.5 ENSMUSG00000043383 ENSMUST00000060562 Olfr1342 protein_coding Interval_108071 chr3 121349203 121350921 + 0 NA intron (ENSMUSG00000039887.11, intron 2 of 2) protein_coding-intron (ENSMUSG00000039887.11, intron 3 of 3) 12370 ENSMUSG00000084674.1 ENSMUSG00000084674 ENSMUST00000122725 Gm26027 misc_RNA Interval_33034 chr11 113788570 113788833 + 0 NA intron (ENSMUSG00000041592.16, intron 44 of 44) protein_coding-intron (ENSMUSG00000041592.16, intron 44 of 44) 21722 ENSMUSG00000041592.16 ENSMUSG00000041592 ENSMUST00000144301 Sdk2 protein_coding Interval_8362 chr1 138043863 138044804 + 0 NA Intergenic Intergenic -56557 ENSMUSG00000088564.1 ENSMUSG00000088564 ENSMUST00000157939 Gm23782 rRNA Interval_40 GL456212.1 50344 50683 + 0 NA NA NA NA NA Interval_67918 chr16 59529598 59530332 + 0 NA intron (ENSMUSG00000022723.16, intron 1 of 6) protein_coding-intron (ENSMUSG00000022723.16, intron 11 of 18) 226 ENSMUSG00000022723.16 ENSMUSG00000022723 ENSMUST00000139989 Crybg3 protein_coding Interval_97989 chr2 146465892 146467602 + 0 NA intron (ENSMUSG00000037110.20, intron 3 of 41) protein_coding-intron (ENSMUSG00000037110.20, intron 3 of 15) 45597 ENSMUSG00000037110.20 ENSMUSG00000037110 ENSMUST00000124709 Ralgapa2 protein_coding Interval_174164 chrX 137015337 137015555 + 0 NA exon (ENSMUSG00000044348.14, exon 3 of 4) protein_coding-exon (ENSMUSG00000044348.14, exon 3 of 4) 17404 ENSMUSG00000083445.1 ENSMUSG00000083445 ENSMUST00000122144 Gm15038 transcribed_processed_pseudogene Interval_147459 chr7 67462430 67462837 + 0 NA Intergenic Intergenic -18700 ENSMUSG00000109329.1 ENSMUSG00000109329 ENSMUST00000208755 Gm33926 lincRNA Interval_38884 chr12 83596699 83597493 + 0 NA promoter-TSS (ENSMUSG00000042628.8) protein_coding-promoter-TSS (ENSMUSG00000042628.8) -274 ENSMUSG00000042628.8 ENSMUSG00000042628 ENSMUST00000223380 Zfyve1 protein_coding Interval_72681 chr17 31525661 31526399 + 0 NA intron (ENSMUSG00000024038.17, intron 2 of 2) protein_coding-intron (ENSMUSG00000024038.17, intron 2 of 3) 5845 ENSMUSG00000024038.17 ENSMUSG00000024038 ENSMUST00000185273 Ndufv3 protein_coding Interval_100035 chr2 166679099 166679472 + 0 NA intron (ENSMUSG00000039621.13, intron 1 of 2) protein_coding-intron (ENSMUSG00000039621.13, intron 1 of 39) -2789 ENSMUSG00000089145.1 ENSMUSG00000089145 ENSMUST00000158520 Gm25265 misc_RNA Interval_43988 chr13 38804269 38804503 + 0 NA intron (ENSMUSG00000114319.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000114767.1, intron 3 of 3) 21369 ENSMUSG00000114319.1 ENSMUSG00000114319 ENSMUST00000225304 Gm47509 lincRNA Interval_69466 chr16 93729755 93730573 + 0 NA promoter-TSS (ENSMUSG00000022946.10) protein_coding-promoter-TSS (ENSMUSG00000022946.10) 46905 ENSMUSG00000022947.8 ENSMUSG00000022947 ENSMUST00000231302 Cbr3 protein_coding Interval_63175 chr15 99568193 99569920 + 0 NA Intergenic Intergenic -9999 ENSMUSG00000023013.5 ENSMUSG00000023013 ENSMUST00000023752 Aqp2 protein_coding Interval_169145 chr9 94473248 94473613 + 0 NA Intergenic Intergenic 56872 ENSMUSG00000099359.1 ENSMUSG00000099359 ENSMUST00000186491 Gm28934 processed_pseudogene Interval_49186 chr13 109256586 109256915 + 0 NA intron (ENSMUSG00000021699.17, intron 1 of 14) protein_coding-intron (ENSMUSG00000021699.17, intron 1 of 14) -67994 ENSMUSG00000076946.2 ENSMUSG00000076946 ENSMUST00000103758 Mir582 miRNA Interval_94452 chr2 91317077 91317932 + 0 NA intron (ENSMUSG00000040591.18, intron 3 of 3) protein_coding-intron (ENSMUSG00000040591.18, intron 3 of 8) 26685 ENSMUSG00000081248.1 ENSMUSG00000081248 ENSMUST00000120422 Gm13787 processed_pseudogene Interval_21454 chr10 128704315 128705656 + 0 NA promoter-TSS (ENSMUSG00000025358.16) protein_coding-promoter-TSS (ENSMUSG00000025358.16) -195 ENSMUSG00000025359.10 ENSMUSG00000025359 ENSMUST00000054125 Pmel protein_coding Interval_156604 chr8 54491199 54491543 + 0 NA Intergenic Intergenic 22779 ENSMUSG00000110403.1 ENSMUSG00000110403 ENSMUST00000209929 Gm45553 TEC Interval_2909 chr1 49402735 49402901 + 0 NA Intergenic Intergenic -2089 ENSMUSG00000099627.1 ENSMUSG00000099627 ENSMUST00000189810 Gm6757 processed_pseudogene Interval_40676 chr12 106939300 106940242 + 0 NA Intergenic Intergenic 16157 ENSMUSG00000086319.1 ENSMUSG00000086319 ENSMUST00000124395 Gm16087 lincRNA Interval_95677 chr2 114018324 114019002 + 0 NA exon (ENSMUSG00000087694.8, exon 2 of 2) processed_transcript-exon (ENSMUSG00000087694.8, exon 2 of 2) 4950 ENSMUSG00000087694.8 ENSMUSG00000087694 ENSMUST00000134129 A530058N18Rik processed_transcript Interval_142945 chr6 147190984 147191752 + 0 NA intron (ENSMUSG00000085600.7, intron 2 of 2) lincRNA-intron (ENSMUSG00000085600.7, intron 2 of 2) 11124 ENSMUSG00000085600.7 ENSMUSG00000085600 ENSMUST00000133471 E330012B07Rik lincRNA Interval_106511 chr3 96797432 96797713 + 0 NA Intergenic Intergenic 13247 ENSMUSG00000105976.1 ENSMUSG00000105976 ENSMUST00000197286 Gm42782 TEC Interval_110467 chr3 158815896 158816270 + 0 NA Intergenic Intergenic -144363 ENSMUSG00000097966.1 ENSMUSG00000097966 ENSMUST00000183173 Gm9423 processed_pseudogene Interval_46563 chr13 67200338 67200527 + 0 NA intron (ENSMUSG00000051037.15, intron 3 of 3) protein_coding-intron (ENSMUSG00000051037.15, intron 2 of 2) 5926 ENSMUSG00000051037.15 ENSMUSG00000051037 ENSMUST00000117110 Zfp455 protein_coding Interval_144559 chr7 25891601 25892309 + 0 NA Intergenic Intergenic -9566 ENSMUSG00000091233.3 ENSMUSG00000091233 ENSMUST00000163316 Gm6434 processed_pseudogene Interval_2161 chr1 36790721 36791744 + 0 NA TTS (ENSMUSG00000026116.11) protein_coding-TTS (ENSMUSG00000026116.11) 12248 ENSMUSG00000026117.10 ENSMUSG00000026117 ENSMUST00000190128 Zap70 protein_coding Interval_151872 chr7 127232341 127233671 + 0 NA promoter-TSS (ENSMUSG00000045598.10) protein_coding-promoter-TSS (ENSMUSG00000045598.10) 124 ENSMUSG00000000486.13 ENSMUSG00000000486 ENSMUST00000205570 Septin1 protein_coding Interval_173962 chrX 117215682 117215944 + 0 NA Intergenic Intergenic 94695 ENSMUSG00000080852.1 ENSMUSG00000080852 ENSMUST00000118153 Gm14918 processed_pseudogene Interval_174053 chrX 133434388 133435122 + 0 NA Intergenic Intergenic -27645 ENSMUSG00000083062.1 ENSMUSG00000083062 ENSMUST00000121247 Gm14980 processed_pseudogene Interval_165070 chr9 44277413 44277894 + 0 NA intron (ENSMUSG00000032131.16, intron 4 of 6) protein_coding-intron (ENSMUSG00000032131.16, intron 10 of 13) 1947 ENSMUSG00000032131.16 ENSMUSG00000032131 ENSMUST00000160384 Abcg4 protein_coding Interval_108845 chr3 132547522 132547866 + 0 NA Intergenic Intergenic -10029 ENSMUSG00000089510.1 ENSMUSG00000089510 ENSMUST00000158885 Gm25307 snRNA Interval_68454 chr16 77035175 77035880 + 0 NA intron (ENSMUSG00000022867.11, intron 2 of 25) protein_coding-intron (ENSMUSG00000022867.11, intron 2 of 23) 21821 ENSMUSG00000022867.11 ENSMUSG00000022867 ENSMUST00000232351 Usp25 protein_coding Interval_38797 chr12 82416869 82417127 + 0 NA exon (ENSMUSG00000042700.16, exon 11 of 21) protein_coding-exon (ENSMUSG00000042700.16, exon 11 of 21) 79539 ENSMUSG00000094374.2 ENSMUSG00000094374 ENSMUST00000179295 Gm5435 processed_pseudogene Interval_144335 chr7 24538678 24539334 + 0 NA TTS (ENSMUSG00000041037.8) protein_coding-TTS (ENSMUSG00000041037.8) 7112 ENSMUSG00000011632.7 ENSMUSG00000011632 ENSMUST00000011776 Pinlyp protein_coding Interval_9536 chr1 158879336 158880455 + 0 NA intron (ENSMUSG00000073530.11, intron 2 of 21) protein_coding-intron (ENSMUSG00000073530.11, intron 2 of 21) 80486 ENSMUSG00000073530.11 ENSMUSG00000073530 ENSMUST00000159892 Pappa2 protein_coding Interval_2004 chr1 35846761 35847105 + 0 NA Intergenic Intergenic -32912 ENSMUSG00000102531.1 ENSMUSG00000102531 ENSMUST00000194261 1110002O04Rik lincRNA Interval_44598 chr13 46619624 46619925 + 0 NA promoter-TSS (ENSMUSG00000114596.1) antisense-promoter-TSS (ENSMUSG00000114596.1) 6 ENSMUSG00000114596.1 ENSMUSG00000114596 ENSMUST00000225040 Gm47523 antisense Interval_100105 chr2 167095505 167095821 + 0 NA TTS (ENSMUSG00000050556.9) protein_coding-TTS (ENSMUSG00000050556.9) 2104 ENSMUSG00000083436.1 ENSMUSG00000083436 ENSMUST00000121824 Gm11471 processed_pseudogene Interval_157306 chr8 69170768 69171623 + 0 NA intron (ENSMUSG00000036306.13, intron 1 of 1) protein_coding-intron (ENSMUSG00000036306.13, intron 1 of 1) 11035 ENSMUSG00000036306.13 ENSMUSG00000036306 ENSMUST00000184961 Lzts1 protein_coding Interval_88167 chr19 60188823 60190051 + 0 NA Intergenic Intergenic -36897 ENSMUSG00000043623.7 ENSMUSG00000043623 ENSMUST00000061046 4933412A08Rik pseudogene Interval_63580 chr15 102166127 102166347 + 0 NA Intergenic Intergenic 15121 ENSMUSG00000023045.13 ENSMUSG00000023045 ENSMUST00000160465 Soat2 protein_coding Interval_92299 chr2 58532351 58534659 + 0 NA intron (ENSMUSG00000026836.15, intron 2 of 11) protein_coding-intron (ENSMUSG00000026836.15, intron 2 of 10) -17233 ENSMUSG00000026836.15 ENSMUSG00000026836 ENSMUST00000126407 Acvr1 protein_coding Interval_133177 chr5 150351178 150352567 + 0 NA intron (ENSMUSG00000056602.12, intron 7 of 60) protein_coding-intron (ENSMUSG00000056602.12, intron 7 of 60) -52431 ENSMUSG00000106719.1 ENSMUSG00000106719 ENSMUST00000201397 Gm42556 antisense Interval_6402 chr1 107126838 107127747 + 0 NA Intergenic Intergenic 11277 ENSMUSG00000083884.1 ENSMUSG00000083884 ENSMUST00000121578 Gm15388 processed_pseudogene Interval_167220 chr9 66274752 66275578 + 0 NA Intergenic Intergenic -75285 ENSMUSG00000038664.16 ENSMUSG00000038664 ENSMUST00000130854 Herc1 protein_coding Interval_18701 chr10 89438117 89438349 + 0 NA intron (ENSMUSG00000074802.11, intron 1 of 11) protein_coding-intron (ENSMUSG00000074802.11, intron 1 of 10) -4391 ENSMUSG00000074802.11 ENSMUSG00000074802 ENSMUST00000219073 Gas2l3 protein_coding Interval_108959 chr3 133599990 133601402 + 0 NA Intergenic Intergenic -12159 ENSMUSG00000077336.1 ENSMUSG00000077336 ENSMUST00000104148 Gm23011 snoRNA Interval_141011 chr6 124370124 124370317 + 0 NA Intergenic Intergenic -1942 ENSMUSG00000107988.1 ENSMUSG00000107988 ENSMUST00000204273 Gm44006 lincRNA Interval_19073 chr10 94240707 94241968 + 0 NA Intergenic Intergenic 42333 ENSMUSG00000020022.17 ENSMUSG00000020022 ENSMUST00000125379 Ndufa12 protein_coding Interval_27208 chr11 64114729 64115478 + 0 NA Intergenic Intergenic 35521 ENSMUSG00000087497.7 ENSMUSG00000087497 ENSMUST00000146333 2810001G20Rik antisense Interval_82779 chr18 77037587 77038915 + 0 NA intron (ENSMUSG00000025420.13, intron 1 of 5) protein_coding-intron (ENSMUSG00000025420.13, intron 1 of 13) 9036 ENSMUSG00000025420.13 ENSMUSG00000025420 ENSMUST00000123650 Katnal2 protein_coding Interval_11831 chr1 186031968 186032436 + 0 NA Intergenic Intergenic 80171 ENSMUSG00000103056.1 ENSMUSG00000103056 ENSMUST00000195813 Gm38268 TEC Interval_41238 chr12 112060565 112061756 + 0 NA intron (ENSMUSG00000054003.13, intron 29 of 31) protein_coding-intron (ENSMUSG00000054003.13, intron 33 of 35) -45519 ENSMUSG00000037686.6 ENSMUSG00000037686 ENSMUST00000222970 Aspg protein_coding Interval_143727 chr7 15950193 15950420 + 0 NA exon (ENSMUSG00000074364.6, exon 6 of 6) protein_coding-exon (ENSMUSG00000074364.6, exon 6 of 6) 4058 ENSMUSG00000093249.2 ENSMUSG00000093249 ENSMUST00000175508 Gm24576 misc_RNA Interval_99510 chr2 162821548 162821825 + 0 NA Intergenic Intergenic -5218 ENSMUSG00000088064.1 ENSMUSG00000088064 ENSMUST00000157439 Gm24478 snRNA Interval_119376 chr4 137314281 137315260 + 0 NA Intergenic Intergenic -10789 ENSMUSG00000089199.1 ENSMUSG00000089199 ENSMUST00000158574 Gm25772 snRNA Interval_123925 chr5 36590365 36591152 + 0 NA intron (ENSMUSG00000106797.1, intron 2 of 2) protein_coding-intron (ENSMUSG00000029192.17, intron 2 of 3) 22981 ENSMUSG00000106797.1 ENSMUSG00000106797 ENSMUST00000174019 Gm42936 processed_transcript Interval_28554 chr11 76676458 76677364 + 0 NA Intergenic Intergenic -2897 ENSMUSG00000046275.2 ENSMUSG00000046275 ENSMUST00000062024 Trarg1 protein_coding Interval_123554 chr5 33474717 33474908 + 0 NA Intergenic Intergenic -37348 ENSMUSG00000107248.1 ENSMUSG00000107248 ENSMUST00000200726 Gm43851 lincRNA Interval_50447 chr14 13398638 13399873 + 0 NA intron (ENSMUSG00000056296.17, intron 3 of 3) protein_coding-intron (ENSMUSG00000056296.17, intron 2 of 5) -45175 ENSMUSG00000081115.2 ENSMUSG00000081115 ENSMUST00000118492 Gm15913 processed_pseudogene Interval_38894 chr12 83653812 83654057 + 0 NA intron (ENSMUSG00000010608.15, intron 5 of 17) protein_coding-intron (ENSMUSG00000010608.15, intron 6 of 18) -9042 ENSMUSG00000010608.15 ENSMUSG00000010608 ENSMUST00000183181 Rbm25 protein_coding Interval_103477 chr3 42722870 42723152 + 0 NA Intergenic Intergenic -137412 ENSMUSG00000104294.1 ENSMUSG00000104294 ENSMUST00000192964 Gm38044 processed_pseudogene Interval_78142 chr18 9280257 9281910 + 0 NA intron (ENSMUSG00000036855.3, intron 1 of 1) protein_coding-intron (ENSMUSG00000036855.3, intron 1 of 1) 1726 ENSMUSG00000036855.3 ENSMUSG00000036855 ENSMUST00000041007 Gjd4 protein_coding Interval_166159 chr9 57162437 57163923 + 0 NA Intergenic Intergenic -6046 ENSMUSG00000032299.10 ENSMUSG00000032299 ENSMUST00000214212 Commd4 protein_coding Interval_124006 chr5 37131308 37131537 + 0 NA intron (ENSMUSG00000117286.1, intron 15 of 33) protein_coding-intron (ENSMUSG00000063646.18, intron 15 of 19) 17638 ENSMUSG00000113373.1 ENSMUSG00000113373 ENSMUST00000212997 Jakmip1 protein_coding Interval_137881 chr6 83127156 83127806 + 0 NA Intergenic Intergenic -2613 ENSMUSG00000030034.12 ENSMUSG00000030034 ENSMUST00000203085 Ino80b protein_coding Interval_108500 chr3 127741674 127742042 + 0 NA intron (ENSMUSG00000028028.11, intron 1 of 2) protein_coding-intron (ENSMUSG00000028028.11, intron 1 of 13) 10264 ENSMUSG00000088537.1 ENSMUSG00000088537 ENSMUST00000157912 Gm23279 rRNA Interval_65684 chr16 25313751 25314201 + 0 NA intron (ENSMUSG00000048399.4, intron 1 of 1) protein_coding-intron (ENSMUSG00000048399.4, intron 1 of 5) 27155 ENSMUSG00000048399.4 ENSMUSG00000048399 ENSMUST00000128595 Tprg protein_coding Interval_11530 chr1 182496384 182497191 + 0 NA exon (ENSMUSG00000104415.1, exon 1 of 1) TEC-exon (ENSMUSG00000104415.1, exon 1 of 1) 2631 ENSMUSG00000104415.1 ENSMUSG00000104415 ENSMUST00000192742 Gm37069 TEC Interval_135619 chr6 41650019 41650218 + 0 NA Intergenic Intergenic -13738 ENSMUSG00000029868.14 ENSMUSG00000029868 ENSMUST00000194405 Trpv6 protein_coding Interval_126429 chr5 88518857 88520011 + 0 NA TTS (ENSMUSG00000067149.6) protein_coding-TTS (ENSMUSG00000067149.6) 7206 ENSMUSG00000067149.6 ENSMUSG00000067149 ENSMUST00000087033 Jchain protein_coding Interval_17544 chr10 77627333 77628205 + 0 NA intron (ENSMUSG00000009293.17, intron 1 of 3) protein_coding-intron (ENSMUSG00000009293.17, intron 1 of 4) 5446 ENSMUSG00000009293.17 ENSMUSG00000009293 ENSMUST00000173360 Ube2g2 protein_coding Interval_37008 chr12 56298104 56298809 + 0 NA Intergenic Intergenic -31252 ENSMUSG00000088389.1 ENSMUSG00000088389 ENSMUST00000157764 Gm24685 misc_RNA Interval_79306 chr18 30317772 30319233 + 0 NA intron (ENSMUSG00000033628.15, intron 16 of 24) protein_coding-intron (ENSMUSG00000033628.15, intron 16 of 23) 45575 ENSMUSG00000033628.15 ENSMUSG00000033628 ENSMUST00000131405 Pik3c3 protein_coding Interval_149505 chr7 99199418 99200902 + 0 NA Intergenic Intergenic -2206 ENSMUSG00000109052.1 ENSMUSG00000109052 ENSMUST00000208323 Gm45012 antisense Interval_74810 chr17 56672747 56673840 + 0 NA promoter-TSS (ENSMUSG00000002372.9) protein_coding-promoter-TSS (ENSMUSG00000002372.9) -91 ENSMUSG00000002372.9 ENSMUSG00000002372 ENSMUST00000232922 Ranbp3 protein_coding Interval_75846 chr17 71782239 71783542 + 0 NA intron (ENSMUSG00000024059.10, intron 1 of 13) protein_coding-intron (ENSMUSG00000024059.10, intron 1 of 15) -26128 ENSMUSG00000117075.1 ENSMUSG00000117075 ENSMUST00000233072 Gm49922 TEC Interval_120438 chr4 148625674 148627512 + 0 NA promoter-TSS (ENSMUSG00000041459.15) protein_coding-promoter-TSS (ENSMUSG00000041459.15) 165 ENSMUSG00000041459.15 ENSMUSG00000041459 ENSMUST00000190478 Tardbp protein_coding Interval_95464 chr2 109847473 109847895 + 0 NA Intergenic Intergenic -43186 ENSMUSG00000027162.7 ENSMUSG00000027162 ENSMUST00000151163 Lin7c protein_coding Interval_73554 chr17 40386676 40386997 + 0 NA Intergenic Intergenic -31831 ENSMUSG00000117162.1 ENSMUSG00000117162 ENSMUST00000233579 Gm49840 processed_pseudogene Interval_109166 chr3 137460975 137461426 + 0 NA Intergenic Intergenic 91422 ENSMUSG00000055138.10 ENSMUSG00000055138 ENSMUST00000198629 Gm4861 lincRNA Interval_17190 chr10 74643756 74644316 + 0 NA exon (ENSMUSG00000052613.16, exon 29 of 29) protein_coding-exon (ENSMUSG00000052613.16, exon 29 of 29) -176686 ENSMUSG00000112686.1 ENSMUSG00000112686 ENSMUST00000218638 Gm7034 processed_pseudogene Interval_3386 chr1 57818998 57819521 + 0 NA intron (ENSMUSG00000038305.15, intron 2 of 11) protein_coding-intron (ENSMUSG00000038305.15, intron 2 of 11) 45097 ENSMUSG00000038305.15 ENSMUSG00000038305 ENSMUST00000164353 Spats2l protein_coding Interval_88849 chr2 11635656 11635969 + 0 NA Intergenic Intergenic -9548 ENSMUSG00000091312.1 ENSMUSG00000091312 ENSMUST00000166779 Gm17490 protein_coding Interval_71140 chr17 19557190 19557461 + 0 NA Intergenic Intergenic -19902 ENSMUSG00000094892.2 ENSMUSG00000094892 ENSMUST00000171914 Vmn2r101 protein_coding Interval_90650 chr2 31681016 31682032 + 0 NA TTS (ENSMUSG00000039356.15) protein_coding-TTS (ENSMUSG00000039356.15) 3240 ENSMUSG00000039356.15 ENSMUSG00000039356 ENSMUST00000192043 Exosc2 protein_coding Interval_161960 chr8 124066643 124067089 + 0 NA intron (ENSMUSG00000092329.1, intron 1 of 15) protein_coding-intron (ENSMUSG00000092329.1, intron 1 of 15) -18454 ENSMUSG00000110704.1 ENSMUSG00000110704 ENSMUST00000212460 Gm45732 antisense Interval_99122 chr2 157348929 157349208 + 0 NA Intergenic Intergenic -1562 ENSMUSG00000027643.9 ENSMUSG00000027643 ENSMUST00000126630 Ghrh protein_coding Interval_11110 chr1 179441523 179442379 + 0 NA intron (ENSMUSG00000055067.15, intron 1 of 11) protein_coding-intron (ENSMUSG00000055067.15, intron 1 of 5) 76054 ENSMUSG00000055067.15 ENSMUSG00000055067 ENSMUST00000194237 Smyd3 protein_coding Interval_118131 chr4 129125811 129126137 + 0 NA Intergenic Intergenic -4234 ENSMUSG00000028785.13 ENSMUSG00000028785 ENSMUST00000135763 Hpca protein_coding Interval_36482 chr12 45667306 45667549 + 0 NA Intergenic Intergenic 4366 ENSMUSG00000112604.1 ENSMUSG00000112604 ENSMUST00000217744 Gm48518 TEC Interval_121219 chr4 154139360 154141060 + 0 NA promoter-TSS (ENSMUSG00000029026.17) protein_coding-promoter-TSS (ENSMUSG00000029026.17) -2 ENSMUSG00000029026.17 ENSMUSG00000029026 ENSMUST00000139634 Trp73 protein_coding Interval_21767 chr11 4235465 4238034 + 0 NA exon (ENSMUSG00000058755.3, exon 1 of 3) protein_coding-exon (ENSMUSG00000058755.3, exon 1 of 3) 329 ENSMUSG00000058755.3 ENSMUSG00000058755 ENSMUST00000075221 Osm protein_coding Interval_126967 chr5 98566451 98567597 + 0 NA promoter-TSS (ENSMUSG00000067101.5) lincRNA-promoter-TSS (ENSMUSG00000067101.5) -98 ENSMUSG00000067101.5 ENSMUSG00000067101 ENSMUST00000086912 1700010H22Rik lincRNA Interval_80031 chr18 36759423 36760631 + 0 NA promoter-TSS (ENSMUSG00000042660.8) protein_coding-promoter-TSS (ENSMUSG00000042660.8) -1947 ENSMUSG00000042660.8 ENSMUSG00000042660 ENSMUST00000235748 Wdr55 protein_coding Interval_37768 chr12 71861059 71861388 + 0 NA intron (ENSMUSG00000034574.10, intron 1 of 14) protein_coding-intron (ENSMUSG00000034574.10, intron 1 of 25) -13932 ENSMUSG00000098224.1 ENSMUSG00000098224 ENSMUST00000183329 Gm7985 processed_pseudogene Interval_148949 chr7 90261968 90262389 + 0 NA intron (ENSMUSG00000030617.13, intron 1 of 10) protein_coding-intron (ENSMUSG00000030617.13, intron 1 of 7) 3599 ENSMUSG00000030617.13 ENSMUSG00000030617 ENSMUST00000207819 Ccdc83 protein_coding Interval_125699 chr5 73348397 73348719 + 0 NA Intergenic Intergenic -10000 ENSMUSG00000029153.11 ENSMUSG00000029153 ENSMUST00000200821 Ociad2 protein_coding Interval_133687 chr6 8666739 8667150 + 0 NA intron (ENSMUSG00000062995.12, intron 3 of 4) protein_coding-intron (ENSMUSG00000062995.12, intron 8 of 13) -69955 ENSMUSG00000107724.1 ENSMUSG00000107724 ENSMUST00000204813 Gm16042 processed_pseudogene Interval_53033 chr14 53704975 53705179 + 0 NA TTS (ENSMUSG00000095607.3) TR_V_gene-TTS (ENSMUSG00000095607.3) 1070 ENSMUSG00000095607.3 ENSMUSG00000095607 ENSMUST00000103664 Trav5-4 TR_V_gene Interval_97920 chr2 145718599 145719094 + 0 NA intron (ENSMUSG00000001768.16, intron 3 of 4) protein_coding-intron (ENSMUSG00000001768.16, intron 2 of 3) -17121 ENSMUSG00000081722.1 ENSMUSG00000081722 ENSMUST00000119964 Gm11763 processed_pseudogene Interval_28088 chr11 72745044 72745247 + 0 NA intron (ENSMUSG00000020790.14, intron 10 of 24) protein_coding-intron (ENSMUSG00000020790.14, intron 8 of 22) 50696 ENSMUSG00000057778.14 ENSMUSG00000057778 ENSMUST00000169476 Cyb5d2 protein_coding Interval_93307 chr2 71816491 71817016 + 0 NA exon (ENSMUSG00000027111.16, exon 2 of 26) protein_coding-exon (ENSMUSG00000027111.16, exon 2 of 26) 29614 ENSMUSG00000027111.16 ENSMUSG00000027111 ENSMUST00000139760 Itga6 protein_coding Interval_134221 chr6 23180259 23180538 + 0 NA Intergenic Intergenic -12984 ENSMUSG00000107032.2 ENSMUSG00000107032 ENSMUST00000096093 Gm5301 processed_pseudogene Interval_87350 chr19 47879894 47880234 + 0 NA intron (ENSMUSG00000025069.15, intron 7 of 7) protein_coding-intron (ENSMUSG00000044948.17, intron 1 of 13) 14238 ENSMUSG00000025069.15 ENSMUSG00000025069 ENSMUST00000135016 Gsto2 protein_coding Interval_54055 chr14 64812909 64813277 + 0 NA exon (ENSMUSG00000021972.14, exon 11 of 11) protein_coding-exon (ENSMUSG00000021972.14, exon 11 of 11) -26007 ENSMUSG00000098837.1 ENSMUSG00000098837 ENSMUST00000184830 Gm20111 processed_pseudogene Interval_96225 chr2 120699885 120700087 + 0 NA exon (ENSMUSG00000033705.17, exon 24 of 34) protein_coding-exon (ENSMUSG00000033705.17, exon 24 of 34) 28652 ENSMUSG00000027284.16 ENSMUSG00000027284 ENSMUST00000136725 Cdan1 protein_coding Interval_165658 chr9 50732819 50733666 + 0 NA intron (ENSMUSG00000032064.17, intron 2 of 20) protein_coding-intron (ENSMUSG00000032064.17, intron 2 of 2) 13279 ENSMUSG00000032062.3 ENSMUSG00000032062 ENSMUST00000215877 2310030G06Rik protein_coding Interval_14038 chr10 25882796 25883438 + 0 NA promoter-TSS (ENSMUSG00000112861.1) processed_pseudogene-promoter-TSS (ENSMUSG00000112861.1) -556 ENSMUSG00000112861.1 ENSMUSG00000112861 ENSMUST00000219770 Gm47930 processed_pseudogene Interval_120048 chr4 141523039 141523611 + 0 NA intron (ENSMUSG00000040761.16, intron 1 of 1) protein_coding-intron (ENSMUSG00000040761.16, intron 1 of 14) -22864 ENSMUSG00000048406.5 ENSMUSG00000048406 ENSMUST00000049927 B330016D10Rik pseudogene Interval_147065 chr7 60491984 60492828 + 0 NA Intergenic Intergenic -151485 ENSMUSG00000109447.1 ENSMUSG00000109447 ENSMUST00000208725 Gm3198 processed_pseudogene Interval_132814 chr5 148061699 148062304 + 0 NA intron (ENSMUSG00000029651.16, intron 1 of 14) protein_coding-intron (ENSMUSG00000029651.16, intron 1 of 14) -104835 ENSMUSG00000085565.1 ENSMUSG00000085565 ENSMUST00000138406 Gm15721 lincRNA Interval_129922 chr5 123070825 123071071 + 0 NA intron (ENSMUSG00000054434.14, intron 1 of 9) protein_coding-intron (ENSMUSG00000054434.14, intron 1 of 9) 4706 ENSMUSG00000080836.1 ENSMUSG00000080836 ENSMUST00000119611 Gm6444 processed_pseudogene Interval_58558 chr15 36066805 36067110 + 0 NA intron (ENSMUSG00000037627.16, intron 14 of 27) protein_coding-intron (ENSMUSG00000037627.16, intron 3 of 6) -26278 ENSMUSG00000037627.16 ENSMUSG00000037627 ENSMUST00000164955 Rgs22 protein_coding Interval_36306 chr12 40984903 40985110 + 0 NA Intergenic Intergenic 35246 ENSMUSG00000114130.1 ENSMUSG00000114130 ENSMUST00000222200 Gm18954 processed_pseudogene Interval_120792 chr4 150662941 150663489 + 0 NA Intergenic Intergenic 15577 ENSMUSG00000085869.1 ENSMUSG00000085869 ENSMUST00000149065 Gm16079 lincRNA Interval_153462 chr7 144954627 144955466 + 0 NA Intergenic Intergenic -15121 ENSMUSG00000070348.5 ENSMUSG00000070348 ENSMUST00000135985 Ccnd1 protein_coding Interval_160057 chr8 106072231 106072614 + 0 NA promoter-TSS (ENSMUSG00000093345.2) misc_RNA-promoter-TSS (ENSMUSG00000093345.2) -548 ENSMUSG00000093345.2 ENSMUSG00000093345 ENSMUST00000175604 Gm27956 misc_RNA Interval_23746 chr11 25753401 25754330 + 0 NA intron (ENSMUSG00000032985.15, intron 2 of 5) protein_coding-intron (ENSMUSG00000032985.15, intron 4 of 6) 15276 ENSMUSG00000032985.15 ENSMUSG00000032985 ENSMUST00000125987 5730522E02Rik protein_coding Interval_21666 chr11 3565513 3566145 + 0 NA Intergenic Intergenic -26537 ENSMUSG00000020439.17 ENSMUSG00000020439 ENSMUST00000151804 Smtn protein_coding Interval_81089 chr18 53761091 53761390 + 0 NA Intergenic Intergenic -16677 ENSMUSG00000048799.8 ENSMUSG00000048799 ENSMUST00000235928 Cep120 protein_coding Interval_69534 chr16 94083512 94086093 + 0 NA promoter-TSS (ENSMUSG00000062713.8) protein_coding-promoter-TSS (ENSMUSG00000062713.8) -129 ENSMUSG00000062713.8 ENSMUSG00000062713 ENSMUST00000231295 Sim2 protein_coding Interval_83402 chr18 84922806 84923619 + 0 NA Intergenic Intergenic -11816 ENSMUSG00000034391.12 ENSMUSG00000034391 ENSMUST00000225015 Fbxo15 protein_coding Interval_93715 chr2 76070313 76071114 + 0 NA intron (ENSMUSG00000075270.11, intron 9 of 14) protein_coding-intron (ENSMUSG00000075270.11, intron 12 of 19) -88746 ENSMUSG00000075271.4 ENSMUSG00000075271 ENSMUST00000099994 Ttc30a1 protein_coding Interval_67031 chr16 41633214 41634931 + 0 NA intron (ENSMUSG00000061080.11, intron 3 of 8) protein_coding-intron (ENSMUSG00000061080.11, intron 1 of 5) -202980 ENSMUSG00000101463.1 ENSMUSG00000101463 ENSMUST00000186327 Gm28750 antisense Interval_55046 chr14 77499849 77500393 + 0 NA intron (ENSMUSG00000067973.11, intron 1 of 4) protein_coding-intron (ENSMUSG00000022012.9, intron 5 of 18) 1319 ENSMUSG00000067973.11 ENSMUSG00000067973 ENSMUST00000163416 Gm6994 antisense Interval_75804 chr17 71514785 71515133 + 0 NA intron (ENSMUSG00000024056.10, intron 8 of 9) protein_coding-intron (ENSMUSG00000024056.10, intron 7 of 16) -8416 ENSMUSG00000089105.1 ENSMUSG00000089105 ENSMUST00000158480 Gm23115 rRNA Interval_41069 chr12 110951339 110951888 + 0 NA intron (ENSMUSG00000021275.16, intron 16 of 19) protein_coding-intron (ENSMUSG00000021275.16, intron 16 of 19) 26642 ENSMUSG00000037904.14 ENSMUSG00000037904 ENSMUST00000144882 Ankrd9 protein_coding Interval_89870 chr2 26121801 26123381 + 0 NA intron (ENSMUSG00000026932.14, intron 1 of 2) protein_coding-intron (ENSMUSG00000026932.14, intron 1 of 5) -15955 ENSMUSG00000087595.1 ENSMUSG00000087595 ENSMUST00000155199 1810012K08Rik lincRNA Interval_71199 chr17 21095330 21096077 + 0 NA TTS (ENSMUSG00000091550.1) unprocessed_pseudogene-TTS (ENSMUSG00000091550.1) 2531 ENSMUSG00000091550.1 ENSMUSG00000091550 ENSMUST00000169389 Gm6811 unprocessed_pseudogene Interval_86636 chr19 42193406 42193642 + 0 NA exon (ENSMUSG00000018820.13, exon 13 of 13) protein_coding-exon (ENSMUSG00000018820.13, exon 13 of 13) 7915 ENSMUSG00000018820.13 ENSMUSG00000018820 ENSMUST00000170184 Zfyve27 protein_coding Interval_34407 chr12 3901804 3902445 + 0 NA intron (ENSMUSG00000020661.15, intron 17 of 22) protein_coding-intron (ENSMUSG00000020661.15, intron 17 of 22) 29916 ENSMUSG00000112271.1 ENSMUSG00000112271 ENSMUST00000220237 Gm9088 processed_pseudogene Interval_42969 chr13 21971718 21971912 + 0 NA Intergenic Intergenic -9379 ENSMUSG00000016982.6 ENSMUSG00000016982 ENSMUST00000017126 Pom121l2 protein_coding Interval_51472 chr14 27873628 27873864 + 0 NA intron (ENSMUSG00000040640.11, intron 1 of 2) protein_coding-intron (ENSMUSG00000040640.11, intron 3 of 15) 2471 ENSMUSG00000109849.1 ENSMUSG00000109849 ENSMUST00000211470 Gm45645 antisense Interval_43149 chr13 24713052 24714106 + 0 NA intron (ENSMUSG00000036006.20, intron 1 of 2) protein_coding-intron (ENSMUSG00000036006.20, intron 16 of 22) -27653 ENSMUSG00000085861.1 ENSMUSG00000085861 ENSMUST00000136906 Armh2 protein_coding Interval_30600 chr11 95382997 95383349 + 0 NA intron (ENSMUSG00000101258.1, intron 1 of 2) antisense-intron (ENSMUSG00000101258.1, intron 1 of 2) 1334 ENSMUSG00000101258.1 ENSMUSG00000101258 ENSMUST00000189860 Gm29477 antisense Interval_57042 chr15 5098137 5098330 + 0 NA exon (ENSMUSG00000041849.7, exon 4 of 4) protein_coding-exon (ENSMUSG00000041849.7, exon 4 of 4) 5686 ENSMUSG00000080720.2 ENSMUSG00000080720 ENSMUST00000121915 Gm16077 processed_pseudogene Interval_163322 chr9 20857007 20857576 + 0 NA intron (ENSMUSG00000118527.1, intron 19 of 19) unprocessed_pseudogene-intron (ENSMUSG00000118527.1, intron 19 of 19) -11986 ENSMUSG00000038884.14 ENSMUSG00000038884 ENSMUST00000176990 Shfl protein_coding Interval_31808 chr11 103053395 103053789 + 0 NA intron (ENSMUSG00000020936.8, intron 3 of 5) protein_coding-intron (ENSMUSG00000020936.8, intron 4 of 11) 25007 ENSMUSG00000020936.8 ENSMUSG00000020936 ENSMUST00000148795 Nmt1 protein_coding Interval_88871 chr2 11895332 11895600 + 0 NA Intergenic Intergenic -4616 ENSMUSG00000103542.1 ENSMUSG00000103542 ENSMUST00000193884 Gm34768 unprocessed_pseudogene Interval_83298 chr18 83876735 83876956 + 0 NA Intergenic Intergenic -28951 ENSMUSG00000117826.1 ENSMUSG00000117826 ENSMUST00000235471 Gm50420 processed_pseudogene Interval_13633 chr10 20298153 20299225 + 0 NA Intergenic Intergenic -1001 ENSMUSG00000098887.1 ENSMUSG00000098887 ENSMUST00000184049 Mir6413 miRNA Interval_148450 chr7 81335688 81336646 + 0 NA Intergenic Intergenic 9060 ENSMUSG00000061787.15 ENSMUSG00000061787 ENSMUST00000138936 Rps17 protein_coding Interval_109808 chr3 147787682 147788025 + 0 NA Intergenic Intergenic -152206 ENSMUSG00000103349.1 ENSMUSG00000103349 ENSMUST00000195819 Gm36888 lincRNA Interval_146592 chr7 47131866 47133221 + 0 NA promoter-TSS (ENSMUSG00000030854.17) protein_coding-promoter-TSS (ENSMUSG00000030854.17) 1034 ENSMUSG00000030854.17 ENSMUSG00000030854 ENSMUST00000209057 Ptpn5 protein_coding Interval_74970 chr17 58549711 58549919 + 0 NA Intergenic Intergenic 30152 ENSMUSG00000117271.1 ENSMUSG00000117271 ENSMUST00000232830 Gm6149 processed_pseudogene Interval_99167 chr2 157704830 157705525 + 0 NA Intergenic Intergenic 8624 ENSMUSG00000077290.1 ENSMUSG00000077290 ENSMUST00000104102 Gm25407 snoRNA Interval_27198 chr11 64018220 64018711 + 0 NA intron (ENSMUSG00000042148.8, intron 4 of 6) protein_coding-intron (ENSMUSG00000042148.8, intron 4 of 6) 5850 ENSMUSG00000084884.1 ENSMUSG00000084884 ENSMUST00000130860 Gm12289 antisense Interval_35375 chr12 21145317 21145561 + 0 NA intron (ENSMUSG00000052632.16, intron 1 of 27) protein_coding-intron (ENSMUSG00000052632.16, intron 1 of 26) 101884 ENSMUSG00000118655.1 ENSMUSG00000118655 ENSMUST00000172962 AC156032.1 processed_transcript Interval_95175 chr2 104558815 104559525 + 0 NA promoter-TSS (ENSMUSG00000086454.7) processed_transcript-promoter-TSS (ENSMUSG00000086454.7) 2509 ENSMUSG00000082379.1 ENSMUSG00000082379 ENSMUST00000118103 Gm13884 processed_pseudogene Interval_7768 chr1 133535706 133536207 + 0 NA Intergenic Intergenic 6477 ENSMUSG00000101004.1 ENSMUSG00000101004 ENSMUST00000188004 Gm8596 processed_pseudogene Interval_164042 chr9 31097809 31098571 + 0 NA intron (ENSMUSG00000031995.9, intron 11 of 18) protein_coding-intron (ENSMUSG00000031995.9, intron 11 of 18) 3988 ENSMUSG00000081343.1 ENSMUSG00000081343 ENSMUST00000119589 Gm16071 processed_pseudogene Interval_128006 chr5 110252616 110252825 + 0 NA exon (ENSMUSG00000029501.14, exon 11 of 13) protein_coding-exon (ENSMUSG00000029501.14, exon 11 of 13) -9441 ENSMUSG00000087439.1 ENSMUSG00000087439 ENSMUST00000130123 Gm15788 antisense Interval_92324 chr2 58761241 58761881 + 0 NA intron (ENSMUSG00000026839.17, intron 2 of 7) protein_coding-intron (ENSMUSG00000026839.17, intron 1 of 7) 20922 ENSMUSG00000080985.1 ENSMUSG00000080985 ENSMUST00000120476 Gm13559 processed_pseudogene Interval_154951 chr8 25236595 25237592 + 0 NA intron (ENSMUSG00000065954.11, intron 1 of 4) protein_coding-intron (ENSMUSG00000065954.11, intron 1 of 2) -35644 ENSMUSG00000065954.11 ENSMUSG00000065954 ENSMUST00000211218 Tacc1 protein_coding Interval_2942 chr1 51411475 51412101 + 0 NA Intergenic Intergenic 47143 ENSMUSG00000101702.1 ENSMUSG00000101702 ENSMUST00000189460 1700072G22Rik lincRNA Interval_17115 chr10 71415064 71415590 + 0 NA intron (ENSMUSG00000060733.13, intron 1 of 1) protein_coding-intron (ENSMUSG00000060733.13, intron 2 of 2) 67491 ENSMUSG00000060733.13 ENSMUSG00000060733 ENSMUST00000145521 Ipmk protein_coding Interval_71006 chr17 17148762 17149150 + 0 NA Intergenic Intergenic 27541 ENSMUSG00000095990.1 ENSMUSG00000095990 ENSMUST00000147630 Zfp97 protein_coding Interval_8975 chr1 152844974 152846967 + 0 NA TTS (ENSMUSG00000042772.15) protein_coding-TTS (ENSMUSG00000042772.15) 2950 ENSMUSG00000042772.15 ENSMUSG00000042772 ENSMUST00000188937 Smg7 protein_coding Interval_125584 chr5 72210319 72212004 + 0 NA intron (ENSMUSG00000046808.17, intron 1 of 2) polymorphic_pseudogene-intron (ENSMUSG00000046808.17, intron 1 of 22) 7832 ENSMUSG00000046808.17 ENSMUSG00000046808 ENSMUST00000146393 Atp10d polymorphic_pseudogene Interval_94858 chr2 97861868 97862082 + 0 NA Intergenic Intergenic 87704 ENSMUSG00000082820.3 ENSMUSG00000082820 ENSMUST00000117547 Gm13803 processed_pseudogene Interval_24075 chr11 30005298 30006043 + 0 NA intron (ENSMUSG00000044072.14, intron 2 of 41) protein_coding-intron (ENSMUSG00000044072.14, intron 2 of 41) 23256 ENSMUSG00000080906.1 ENSMUSG00000080906 ENSMUST00000121962 Gm12095 processed_pseudogene Interval_84531 chr19 12432466 12433410 + 0 NA TTS (ENSMUSG00000040065.8) protein_coding-TTS (ENSMUSG00000040065.8) 5033 ENSMUSG00000040065.8 ENSMUSG00000040065 ENSMUST00000168148 Pfpl protein_coding Interval_143602 chr7 13059177 13060169 + 0 NA Intergenic Intergenic -7293 ENSMUSG00000030380.17 ENSMUSG00000030380 ENSMUST00000183176 Mzf1 protein_coding Interval_52843 chr14 51014822 51015218 + 0 NA Intergenic Intergenic 7269 ENSMUSG00000021872.8 ENSMUSG00000021872 ENSMUST00000022424 Rnase10 protein_coding Interval_68898 chr16 88091218 88091481 + 0 NA intron (ENSMUSG00000022935.16, intron 1 of 16) protein_coding-intron (ENSMUSG00000022935.16, intron 1 of 15) 198515 ENSMUSG00000022935.16 ENSMUSG00000022935 ENSMUST00000210910 Grik1 protein_coding Interval_78479 chr18 13506772 13507497 + 0 NA intron (ENSMUSG00000117608.1, intron 5 of 5) lincRNA-intron (ENSMUSG00000117608.1, intron 5 of 5) 94266 ENSMUSG00000117608.1 ENSMUSG00000117608 ENSMUST00000234112 AC103362.1 lincRNA Interval_149961 chr7 103806797 103807760 + 0 NA Intergenic Intergenic 6718 ENSMUSG00000073940.3 ENSMUSG00000073940 ENSMUST00000098192 Hbb-bt protein_coding Interval_6783 chr1 119453594 119454225 + 0 NA Intergenic Intergenic -31661 ENSMUSG00000037035.5 ENSMUSG00000037035 ENSMUST00000038765 Inhbb protein_coding Interval_162824 chr9 9631895 9632423 + 0 NA Intergenic Intergenic 38882 ENSMUSG00000092776.1 ENSMUSG00000092776 ENSMUST00000175035 Gm26195 miRNA Interval_27041 chr11 62510510 62513877 + 0 NA TTS (ENSMUSG00000014245.8) protein_coding-TTS (ENSMUSG00000014245.8) -10548 ENSMUSG00000086636.1 ENSMUSG00000086636 ENSMUST00000143382 Gm12949 antisense Interval_32569 chr11 108672787 108673086 + 0 NA intron (ENSMUSG00000020728.17, intron 13 of 16) protein_coding-intron (ENSMUSG00000020728.17, intron 22 of 27) 15099 ENSMUSG00000081016.1 ENSMUSG00000081016 ENSMUST00000121388 Olfr1397-ps1 unprocessed_pseudogene Interval_137060 chr6 67052187 67052383 + 0 NA intron (ENSMUSG00000087231.7, intron 2 of 6) processed_transcript-intron (ENSMUSG00000087231.7, intron 1 of 6) -14921 ENSMUSG00000036390.8 ENSMUSG00000036390 ENSMUST00000155041 Gadd45a protein_coding Interval_160039 chr8 105965383 105967344 + 0 NA promoter-TSS (ENSMUSG00000017765.17) protein_coding-promoter-TSS (ENSMUSG00000017765.17) -289 ENSMUSG00000017765.17 ENSMUSG00000017765 ENSMUST00000143381 Slc12a4 protein_coding Interval_11279 chr1 180666494 180666756 + 0 NA intron (ENSMUSG00000058729.13, intron 2 of 5) protein_coding-intron (ENSMUSG00000058729.13, intron 7 of 11) -14262 ENSMUSG00000058729.13 ENSMUSG00000058729 ENSMUST00000194847 Lin9 protein_coding Interval_26117 chr11 54456445 54456832 + 0 NA intron (ENSMUSG00000035992.15, intron 1 of 17) protein_coding-intron (ENSMUSG00000035992.15, intron 1 of 17) -1524 ENSMUSG00000088437.1 ENSMUSG00000088437 ENSMUST00000157812 Gm24198 snRNA Interval_96214 chr2 120554419 120555031 + 0 NA intron (ENSMUSG00000027288.16, intron 1 of 2) protein_coding-intron (ENSMUSG00000027288.16, intron 2 of 21) -12998 ENSMUSG00000027287.14 ENSMUSG00000027287 ENSMUST00000130759 Snap23 protein_coding Interval_46536 chr13 66918206 66918800 + 0 NA intron (ENSMUSG00000021519.11, intron 3 of 4) protein_coding-intron (ENSMUSG00000021519.11, intron 4 of 7) 13589 ENSMUSG00000074826.10 ENSMUSG00000074826 ENSMUST00000099412 Gm10767 protein_coding Interval_140356 chr6 117151673 117151981 + 0 NA Intergenic Intergenic 7502 ENSMUSG00000107903.1 ENSMUSG00000107903 ENSMUST00000203868 Gm43930 TEC Interval_121415 chr4 155651532 155652001 + 0 NA TTS (ENSMUSG00000029061.2) protein_coding-TTS (ENSMUSG00000029061.2) 259 ENSMUSG00000029061.2 ENSMUSG00000029061 ENSMUST00000139242 Mmp23 protein_coding Interval_12371 chr1 192721527 192722591 + 0 NA intron (ENSMUSG00000037375.16, intron 6 of 11) protein_coding-intron (ENSMUSG00000037375.16, intron 6 of 11) -23512 ENSMUSG00000094131.1 ENSMUSG00000094131 ENSMUST00000082947 Gm22265 snRNA Interval_47529 chr13 86437879 86438260 + 0 NA Intergenic Intergenic 202242 ENSMUSG00000098152.1 ENSMUSG00000098152 ENSMUST00000182392 Gm27025 processed_pseudogene Interval_85219 chr19 23911577 23911791 + 0 NA intron (ENSMUSG00000024897.9, intron 1 of 11) protein_coding-intron (ENSMUSG00000024897.9, intron 2 of 12) 7227 ENSMUSG00000024897.9 ENSMUSG00000024897 ENSMUST00000237688 Apba1 protein_coding Interval_127390 chr5 103678968 103680590 + 0 NA Intergenic Intergenic 21542 ENSMUSG00000088121.1 ENSMUSG00000088121 ENSMUST00000157496 Gm25721 snRNA Interval_157713 chr8 72461109 72462690 + 0 NA TTS (ENSMUSG00000052794.13) protein_coding-TTS (ENSMUSG00000052794.13) 4009 ENSMUSG00000052794.13 ENSMUSG00000052794 ENSMUST00000139130 1700030K09Rik protein_coding Interval_106814 chr3 101048456 101049657 + 0 NA intron (ENSMUSG00000027864.9, intron 7 of 8) protein_coding-intron (ENSMUSG00000027864.9, intron 7 of 8) -26880 ENSMUSG00000086564.9 ENSMUSG00000086564 ENSMUST00000167086 Cd101 protein_coding Interval_57492 chr15 11771384 11771583 + 0 NA Intergenic Intergenic -67780 ENSMUSG00000115585.1 ENSMUSG00000115585 ENSMUST00000228108 Gm41271 processed_transcript Interval_166943 chr9 64060064 64061114 + 0 NA Intergenic Intergenic 12093 ENSMUSG00000088988.1 ENSMUSG00000088988 ENSMUST00000158363 Gm25606 rRNA Interval_168531 chr9 83170525 83170942 + 0 NA Intergenic Intergenic 5044 ENSMUSG00000104080.1 ENSMUSG00000104080 ENSMUST00000194067 Gm38279 TEC Interval_166420 chr9 59317153 59317544 + 0 NA intron (ENSMUSG00000025236.11, intron 2 of 5) protein_coding-intron (ENSMUSG00000025236.11, intron 2 of 5) 10165 ENSMUSG00000025235.8 ENSMUSG00000025235 ENSMUST00000214225 Bbs4 protein_coding Interval_139956 chr6 113037888 113039347 + 0 NA Intergenic Intergenic -2683 ENSMUSG00000065309.1 ENSMUSG00000065309 ENSMUST00000083375 Gm23244 snRNA Interval_123165 chr5 30232192 30233325 + 0 NA promoter-TSS (ENSMUSG00000075703.15) protein_coding-promoter-TSS (ENSMUSG00000075703.15) 123 ENSMUSG00000075703.15 ENSMUSG00000075703 ENSMUST00000151795 Selenoi protein_coding Interval_50967 chr14 21352931 21353570 + 0 NA intron (ENSMUSG00000039197.10, intron 7 of 10) protein_coding-intron (ENSMUSG00000039197.10, intron 7 of 10) 89626 ENSMUSG00000088456.1 ENSMUSG00000088456 ENSMUST00000157831 Gm26372 misc_RNA Interval_22282 chr11 8523543 8524476 + 0 NA intron (ENSMUSG00000020422.14, intron 13 of 30) protein_coding-intron (ENSMUSG00000020422.14, intron 13 of 30) -140156 ENSMUSG00000083553.1 ENSMUSG00000083553 ENSMUST00000117240 Gm11989 processed_pseudogene Interval_110360 chr3 157410342 157410589 + 0 NA exon (ENSMUSG00000104555.1, exon 1 of 1) processed_pseudogene-exon (ENSMUSG00000104555.1, exon 1 of 1) 448 ENSMUSG00000104555.1 ENSMUSG00000104555 ENSMUST00000197739 Gm5983 processed_pseudogene Interval_4823 chr1 79782170 79783787 + 0 NA Intergenic Intergenic 6862 ENSMUSG00000026248.9 ENSMUSG00000026248 ENSMUST00000189176 Mrpl44 protein_coding Interval_120281 chr4 145161339 145162529 + 0 NA intron (ENSMUSG00000020220.16, intron 17 of 69) protein_coding-intron (ENSMUSG00000020220.16, intron 16 of 67) -6448 ENSMUSG00000020220.16 ENSMUSG00000020220 ENSMUST00000132700 Vps13d protein_coding Interval_981 chr1 13625312 13626322 + 0 NA exon (ENSMUSG00000025937.6, exon 7 of 7) protein_coding-exon (ENSMUSG00000025937.6, exon 7 of 7) 12594 ENSMUSG00000025937.6 ENSMUSG00000025937 ENSMUST00000156222 Lactb2 protein_coding Interval_159074 chr8 89571919 89572709 + 0 NA Intergenic Intergenic 17227 ENSMUSG00000064758.1 ENSMUSG00000064758 ENSMUST00000082824 Gm26331 snRNA Interval_157826 chr8 74534385 74534713 + 0 NA Intergenic Intergenic 264302 ENSMUSG00000098378.1 ENSMUSG00000098378 ENSMUST00000183704 Gm27864 miRNA Interval_141756 chr6 134248242 134249971 + 0 NA TTS (ENSMUSG00000030199.16) protein_coding-TTS (ENSMUSG00000030199.16) -2740 ENSMUSG00000108263.1 ENSMUSG00000108263 ENSMUST00000204426 1700051K13Rik TEC Interval_26864 chr11 61181377 61182302 + 0 NA Intergenic Intergenic -13564 ENSMUSG00000042506.15 ENSMUSG00000042506 ENSMUST00000174220 Usp22 protein_coding Interval_99147 chr2 157480282 157481012 + 0 NA Intergenic Intergenic 41381 ENSMUSG00000081740.3 ENSMUSG00000081740 ENSMUST00000117142 Gm14279 processed_pseudogene Interval_55517 chr14 90009673 90010068 + 0 NA Intergenic Intergenic 76022 ENSMUSG00000115313.1 ENSMUSG00000115313 ENSMUST00000228325 Gm48941 lincRNA Interval_91968 chr2 52083935 52084199 + 0 NA intron (ENSMUSG00000036202.16, intron 9 of 35) protein_coding-intron (ENSMUSG00000036202.16, intron 9 of 35) -28066 ENSMUSG00000036202.16 ENSMUSG00000036202 ENSMUST00000152178 Rif1 protein_coding Interval_85963 chr19 34244067 34244645 + 0 NA TTS (ENSMUSG00000035783.9) protein_coding-TTS (ENSMUSG00000035783.9) 9874 ENSMUSG00000035783.9 ENSMUSG00000035783 ENSMUST00000238147 Acta2 protein_coding Interval_151288 chr7 120695322 120696936 + 0 NA intron (ENSMUSG00000046096.7, intron 2 of 3) protein_coding-intron (ENSMUSG00000046096.7, intron 1 of 2) -19435 ENSMUSG00000097343.2 ENSMUSG00000097343 ENSMUST00000207861 9030407P20Rik processed_transcript Interval_162915 chr9 12945180 12946548 + 0 NA Intergenic Intergenic 80431 ENSMUSG00000098228.1 ENSMUSG00000098228 ENSMUST00000182425 Gm21070 processed_pseudogene Interval_104618 chr3 68856194 68856453 + 0 NA Intergenic Intergenic 10244 ENSMUSG00000103218.1 ENSMUSG00000103218 ENSMUST00000195850 Gm7270 processed_pseudogene Interval_54043 chr14 64702888 64703503 + 0 NA intron (ENSMUSG00000060012.9, intron 2 of 2) protein_coding-intron (ENSMUSG00000060012.9, intron 2 of 39) 50635 ENSMUSG00000060012.9 ENSMUSG00000060012 ENSMUST00000224677 Kif13b protein_coding Interval_4705 chr1 77458707 77458973 + 0 NA intron (ENSMUSG00000026235.14, intron 2 of 15) protein_coding-intron (ENSMUSG00000026235.14, intron 3 of 17) 37928 ENSMUSG00000099141.1 ENSMUSG00000099141 ENSMUST00000184495 Mir6352 miRNA Interval_67115 chr16 43412896 43413288 + 0 NA intron (ENSMUSG00000085499.1, intron 4 of 4) protein_coding-intron (ENSMUSG00000022708.16, intron 2 of 8) 7104 ENSMUSG00000085499.1 ENSMUSG00000085499 ENSMUST00000155900 Gm15713 antisense Interval_21083 chr10 126008180 126008744 + 0 NA TTS (ENSMUSG00000020105.9) protein_coding-TTS (ENSMUSG00000020105.9) -28365 ENSMUSG00000093161.1 ENSMUSG00000093161 ENSMUST00000175420 Gm22183 miRNA Interval_22541 chr11 11626518 11627097 + 0 NA intron (ENSMUSG00000062511.6, intron 1 of 2) protein_coding-intron (ENSMUSG00000062511.6, intron 1 of 3) 1028 ENSMUSG00000062511.6 ENSMUSG00000062511 ENSMUST00000149910 4930512M02Rik protein_coding Interval_129985 chr5 123511308 123512731 + 0 NA TTS (ENSMUSG00000029431.5) protein_coding-TTS (ENSMUSG00000029431.5) 1559 ENSMUSG00000029431.5 ENSMUSG00000029431 ENSMUST00000031384 B3gnt4 protein_coding Interval_9945 chr1 164306997 164308159 + 0 NA promoter-TSS (ENSMUSG00000026577.13) protein_coding-promoter-TSS (ENSMUSG00000026577.13) -107 ENSMUSG00000026577.13 ENSMUSG00000026577 ENSMUST00000148884 Blzf1 protein_coding Interval_17339 chr10 75975161 75975779 + 0 NA intron (ENSMUSG00000033255.8, intron 1 of 7) protein_coding-intron (ENSMUSG00000033255.8, intron 4 of 13) 1384 ENSMUSG00000033255.8 ENSMUSG00000033255 ENSMUST00000134234 Gm5134 protein_coding Interval_101948 chr3 12797558 12798060 + 0 NA Intergenic Intergenic -58211 ENSMUSG00000095661.1 ENSMUSG00000095661 ENSMUST00000105727 Gm8935 transcribed_processed_pseudogene Interval_53452 chr14 57609257 57609908 + 0 NA intron (ENSMUSG00000021952.16, intron 9 of 22) protein_coding-intron (ENSMUSG00000021952.16, intron 9 of 22) 37968 ENSMUSG00000097933.2 ENSMUSG00000097933 ENSMUST00000180397 1700039M10Rik bidirectional_promoter_lncRNA Interval_26383 chr11 57530229 57531786 + 0 NA exon (ENSMUSG00000020522.13, exon 3 of 3) protein_coding-exon (ENSMUSG00000020522.13, exon 3 of 3) 12321 ENSMUSG00000020522.13 ENSMUSG00000020522 ENSMUST00000108848 Mfap3 protein_coding Interval_77761 chr18 3326624 3326844 + 0 NA intron (ENSMUSG00000063889.16, intron 1 of 3) protein_coding-intron (ENSMUSG00000063889.16, intron 1 of 3) -10004 ENSMUSG00000097746.2 ENSMUSG00000097746 ENSMUST00000234647 Gm6225 processed_transcript Interval_152037 chr7 128479807 128480034 + 0 NA Intergenic Intergenic -1782 ENSMUSG00000093125.1 ENSMUSG00000093125 ENSMUST00000175384 Gm24365 miRNA Interval_76101 chr17 74979283 74979879 + 0 NA Intergenic Intergenic -25987 ENSMUSG00000001870.16 ENSMUSG00000001870 ENSMUST00000135750 Ltbp1 protein_coding Interval_165516 chr9 48936424 48936678 + 0 NA intron (ENSMUSG00000008590.4, intron 8 of 8) protein_coding-intron (ENSMUSG00000008590.4, intron 8 of 8) -25530 ENSMUSG00000032269.8 ENSMUSG00000032269 ENSMUST00000003826 Htr3a protein_coding Interval_60001 chr15 63652357 63652972 + 0 NA intron (ENSMUSG00000115520.2, intron 2 of 8) lincRNA-intron (ENSMUSG00000115520.2, intron 2 of 8) 20967 ENSMUSG00000095812.1 ENSMUSG00000095812 ENSMUST00000179326 Gm5473 processed_pseudogene Interval_99515 chr2 162899575 162899832 + 0 NA promoter-TSS (ENSMUSG00000083567.3) processed_pseudogene-promoter-TSS (ENSMUSG00000083567.3) -180 ENSMUSG00000083567.3 ENSMUSG00000083567 ENSMUST00000118946 Gm11451 processed_pseudogene Interval_137270 chr6 70921100 70922184 + 0 NA Intergenic Intergenic -2715 ENSMUSG00000051896.4 ENSMUSG00000051896 ENSMUST00000063456 Tex37 protein_coding Interval_76029 chr17 74472879 74473702 + 0 NA Intergenic Intergenic -18554 ENSMUSG00000024072.9 ENSMUSG00000024072 ENSMUST00000234853 Yipf4 protein_coding Interval_4232 chr1 71937990 71938423 + 0 NA Intergenic Intergenic -39271 ENSMUSG00000101211.1 ENSMUSG00000101211 ENSMUST00000189983 Gm28818 lincRNA Interval_136616 chr6 56707831 56708246 + 0 NA Intergenic Intergenic -3328 ENSMUSG00000091625.8 ENSMUSG00000091625 ENSMUST00000176595 Lsm5 protein_coding Interval_7804 chr1 133800557 133801507 + 0 NA promoter-TSS (ENSMUSG00000026463.17) protein_coding-promoter-TSS (ENSMUSG00000026463.17) -22611 ENSMUSG00000102509.1 ENSMUSG00000102509 ENSMUST00000193173 Gm37368 TEC Interval_26426 chr11 57786341 57788192 + 0 NA exon (ENSMUSG00000020520.14, exon 12 of 12) protein_coding-exon (ENSMUSG00000020520.14, exon 12 of 12) 14151 ENSMUSG00000087165.7 ENSMUSG00000087165 ENSMUST00000140069 2010001A14Rik processed_transcript Interval_129050 chr5 117096232 117096964 + 0 NA exon (ENSMUSG00000066900.11, exon 2 of 3) protein_coding-exon (ENSMUSG00000066900.11, exon 2 of 3) 7803 ENSMUSG00000066900.11 ENSMUSG00000066900 ENSMUST00000201287 Suds3 protein_coding Interval_48595 chr13 100571435 100572336 + 0 NA Intergenic Intergenic -11853 ENSMUSG00000114332.1 ENSMUSG00000114332 ENSMUST00000223825 Gm8847 processed_pseudogene Interval_38142 chr12 75918673 75919192 + 0 NA intron (ENSMUSG00000063450.14, intron 20 of 114) protein_coding-intron (ENSMUSG00000063450.14, intron 20 of 115) 9829 ENSMUSG00000092922.1 ENSMUSG00000092922 ENSMUST00000175181 Mir5101 miRNA Interval_50371 chr14 12139388 12141106 + 0 NA intron (ENSMUSG00000021745.14, intron 8 of 29) protein_coding-intron (ENSMUSG00000021745.14, intron 8 of 29) 12337 ENSMUSG00000114246.1 ENSMUSG00000114246 ENSMUST00000225204 Gm48603 TEC Interval_152588 chr7 134872257 134873457 + 0 NA intron (ENSMUSG00000058325.6, intron 25 of 26) protein_coding-intron (ENSMUSG00000058325.6, intron 25 of 51) -27813 ENSMUSG00000110167.1 ENSMUSG00000110167 ENSMUST00000210342 Gm45532 TEC Interval_55108 chr14 78173462 78173994 + 0 NA Intergenic Intergenic 17750 ENSMUSG00000087932.1 ENSMUSG00000087932 ENSMUST00000157307 Mir1971 miRNA Interval_124359 chr5 44553258 44554175 + 0 NA intron (ENSMUSG00000039706.11, intron 2 of 8) protein_coding-intron (ENSMUSG00000039706.11, intron 2 of 7) -31347 ENSMUSG00000105648.1 ENSMUSG00000105648 ENSMUST00000200579 Gm43505 TEC Interval_51104 chr14 23169056 23169672 + 0 NA Intergenic Intergenic -74793 ENSMUSG00000068680.1 ENSMUSG00000068680 ENSMUST00000090409 Gm10248 antisense Interval_28406 chr11 75694046 75694528 + 0 NA intron (ENSMUSG00000017776.15, intron 2 of 2) protein_coding-intron (ENSMUSG00000017776.15, intron 2 of 2) 14745 ENSMUSG00000017776.15 ENSMUSG00000017776 ENSMUST00000147718 Crk protein_coding Interval_5517 chr1 89509888 89510298 + 0 NA intron (ENSMUSG00000055013.16, intron 1 of 16) protein_coding-intron (ENSMUSG00000055013.16, intron 1 of 17) 26655 ENSMUSG00000104114.1 ENSMUSG00000104114 ENSMUST00000192974 Gm37297 TEC Interval_5226 chr1 86569558 86569996 + 0 NA intron (ENSMUSG00000026239.14, intron 1 of 4) protein_coding-intron (ENSMUSG00000026239.14, intron 1 of 4) -10281 ENSMUSG00000102927.1 ENSMUSG00000102927 ENSMUST00000193369 Gm37152 TEC Interval_34842 chr12 12563813 12564336 + 0 NA Intergenic Intergenic 105843 ENSMUSG00000118614.1 ENSMUSG00000118614 ENSMUST00000239228 AC107703.1 lincRNA Interval_156369 chr8 47760020 47760909 + 0 NA Intergenic Intergenic 5661 ENSMUSG00000110604.1 ENSMUSG00000110604 ENSMUST00000212236 Gm45824 lincRNA Interval_4339 chr1 72812731 72812949 + 0 NA Intergenic Intergenic -35859 ENSMUSG00000039323.18 ENSMUSG00000039323 ENSMUST00000155703 Igfbp2 protein_coding Interval_135650 chr6 42339792 42340133 + 0 NA intron (ENSMUSG00000108033.1, intron 1 of 1) antisense-intron (ENSMUSG00000108033.1, intron 1 of 1) -2179 ENSMUSG00000065206.1 ENSMUSG00000065206 ENSMUST00000083272 Gm24611 snRNA Interval_66815 chr16 37835210 37835875 + 0 NA TTS (ENSMUSG00000022816.11) protein_coding-TTS (ENSMUSG00000022816.11) -19240 ENSMUSG00000084602.1 ENSMUSG00000084602 ENSMUST00000122653 n-R5s34 rRNA Interval_45149 chr13 52742313 52742505 + 0 NA intron (ENSMUSG00000113737.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000113737.1, intron 1 of 2) 14796 ENSMUSG00000113737.1 ENSMUSG00000113737 ENSMUST00000223209 BB123696 lincRNA Interval_68250 chr16 71120524 71121095 + 0 NA Intergenic Intergenic -10267 ENSMUSG00000116750.1 ENSMUSG00000116750 ENSMUST00000231591 4931420L22Rik lincRNA Interval_3418 chr1 58165951 58167024 + 0 NA intron (ENSMUSG00000064294.12, intron 21 of 34) protein_coding-intron (ENSMUSG00000064294.12, intron 21 of 34) -11399 ENSMUSG00000089275.1 ENSMUSG00000089275 ENSMUST00000158650 Gm24548 snoRNA Interval_112987 chr4 46636435 46636642 + 0 NA intron (ENSMUSG00000039813.14, intron 3 of 3) protein_coding-intron (ENSMUSG00000039813.14, intron 3 of 12) 13671 ENSMUSG00000039813.14 ENSMUSG00000039813 ENSMUST00000107750 Tbc1d2 protein_coding Interval_174133 chrX 136032724 136033641 + 0 NA promoter-TSS (ENSMUSG00000048355.2) protein_coding-promoter-TSS (ENSMUSG00000048355.2) -185 ENSMUSG00000048355.2 ENSMUSG00000048355 ENSMUST00000057625 Arxes1 protein_coding Interval_67186 chr16 44221157 44221447 + 0 NA exon (ENSMUSG00000068284.14, exon 7 of 7) protein_coding-exon (ENSMUSG00000068284.14, exon 7 of 7) 47905 ENSMUSG00000068284.14 ENSMUSG00000068284 ENSMUST00000169582 Usf3 protein_coding Interval_133314 chr5 151636373 151636599 + 0 NA intron (ENSMUSG00000106759.1, intron 1 of 2) unprocessed_pseudogene-intron (ENSMUSG00000106759.1, intron 1 of 2) 495 ENSMUSG00000106759.1 ENSMUSG00000106759 ENSMUST00000202147 AC120011.1 unprocessed_pseudogene Interval_68326 chr16 73205491 73205660 + 0 NA exon (ENSMUSG00000116976.1, exon 3 of 6) processed_transcript-exon (ENSMUSG00000116976.1, exon 3 of 6) 133200 ENSMUSG00000116976.1 ENSMUSG00000116976 ENSMUST00000231486 4930500H12Rik processed_transcript Interval_23605 chr11 23737878 23738813 + 0 NA exon (ENSMUSG00000020275.9, exon 10 of 10) protein_coding-exon (ENSMUSG00000020275.9, exon 10 of 10) 32625 ENSMUSG00000020275.9 ENSMUSG00000020275 ENSMUST00000102864 Rel protein_coding Interval_69794 chr16 96440399 96441432 + 0 NA intron (ENSMUSG00000000157.16, intron 1 of 15) protein_coding-intron (ENSMUSG00000000157.16, intron 1 of 15) -3799 ENSMUSG00000117039.1 ENSMUSG00000117039 ENSMUST00000233005 Gm32358 TEC Interval_16264 chr10 61805176 61805426 + 0 NA Intergenic Intergenic -21154 ENSMUSG00000020086.6 ENSMUSG00000020086 ENSMUST00000020283 Macroh2a2 protein_coding Interval_39860 chr12 99175093 99175294 + 0 NA Intergenic Intergenic -12385 ENSMUSG00000113210.1 ENSMUSG00000113210 ENSMUST00000223511 4930474N09Rik lincRNA Interval_83154 chr18 82308593 82310407 + 0 NA Intergenic Intergenic 28215 ENSMUSG00000118279.1 ENSMUSG00000118279 ENSMUST00000237322 Gm50298 lincRNA Interval_75418 chr17 66454570 66454840 + 0 NA Intergenic Intergenic 4851 ENSMUSG00000117003.1 ENSMUSG00000117003 ENSMUST00000233518 Gm49937 bidirectional_promoter_lncRNA Interval_171128 chr9 114666828 114667567 + 0 NA Intergenic Intergenic -19162 ENSMUSG00000111744.1 ENSMUSG00000111744 ENSMUST00000214787 Gm7780 processed_pseudogene Interval_93738 chr2 76369707 76370777 + 0 NA exon (ENSMUSG00000042369.8, exon 1 of 10) protein_coding-exon (ENSMUSG00000042369.8, exon 1 of 10) 258 ENSMUSG00000042369.8 ENSMUSG00000042369 ENSMUST00000046389 Rbm45 protein_coding Interval_107539 chr3 108367262 108368072 + 0 NA intron (ENSMUSG00000068745.6, intron 1 of 8) protein_coding-intron (ENSMUSG00000068745.6, intron 1 of 8) 2756 ENSMUSG00000068745.6 ENSMUSG00000068745 ENSMUST00000090563 Mybphl protein_coding Interval_42925 chr13 21433593 21434771 + 0 NA intron (ENSMUSG00000055313.15, intron 2 of 4) protein_coding-intron (ENSMUSG00000055313.15, intron 2 of 4) 415 ENSMUSG00000055313.15 ENSMUSG00000055313 ENSMUST00000145494 Pgbd1 protein_coding Interval_46495 chr13 66599368 66602302 + 0 NA Intergenic Intergenic -8822 ENSMUSG00000114262.1 ENSMUSG00000114262 ENSMUST00000225932 Gm49532 processed_pseudogene Interval_130493 chr5 128350531 128351044 + 0 NA intron (ENSMUSG00000034310.8, intron 1 of 8) protein_coding-intron (ENSMUSG00000034310.8, intron 1 of 8) 14010 ENSMUSG00000105857.1 ENSMUSG00000105857 ENSMUST00000198962 Gm42817 antisense Interval_152193 chr7 130563261 130563468 + 0 NA intron (ENSMUSG00000040331.16, intron 1 of 7) protein_coding-intron (ENSMUSG00000030849.18, intron 2 of 6) -24156 ENSMUSG00000040331.16 ENSMUSG00000040331 ENSMUST00000161414 Nsmce4a protein_coding Interval_173526 chrX 98583503 98584031 + 0 NA intron (ENSMUSG00000031214.13, intron 21 of 25) protein_coding-intron (ENSMUSG00000031214.13, intron 20 of 24) -38885 ENSMUSG00000083603.1 ENSMUSG00000083603 ENSMUST00000121628 Gm14810 processed_pseudogene Interval_87954 chr19 57360388 57361681 + 0 NA promoter-TSS (ENSMUSG00000097785.2) processed_transcript-promoter-TSS (ENSMUSG00000097785.2) 4 ENSMUSG00000033478.5 ENSMUSG00000033478 ENSMUST00000237170 Fam160b1 protein_coding Interval_159111 chr8 90776484 90776975 + 0 NA Intergenic Intergenic -14133 ENSMUSG00000110212.1 ENSMUSG00000110212 ENSMUST00000211762 Gm35963 lincRNA Interval_162710 chr9 7944379 7945891 + 0 NA intron (ENSMUSG00000053110.13, intron 5 of 8) protein_coding-intron (ENSMUSG00000053110.13, intron 6 of 8) -20703 ENSMUSG00000092185.1 ENSMUSG00000092185 ENSMUST00000174760 Gm20416 processed_transcript Interval_133057 chr5 149566142 149566499 + 0 NA intron (ENSMUSG00000029658.17, intron 5 of 19) protein_coding-intron (ENSMUSG00000029658.17, intron 6 of 22) -28290 ENSMUSG00000107132.1 ENSMUSG00000107132 ENSMUST00000202188 Gm15997 antisense Interval_75967 chr17 73935557 73936051 + 0 NA intron (ENSMUSG00000024066.9, intron 5 of 5) protein_coding-intron (ENSMUSG00000024066.9, intron 5 of 35) -1891 ENSMUSG00000117182.1 ENSMUSG00000117182 ENSMUST00000233795 Gm18068 processed_pseudogene Interval_7691 chr1 133079565 133080445 + 0 NA intron (ENSMUSG00000026447.17, intron 11 of 11) protein_coding-intron (ENSMUSG00000026447.17, intron 11 of 32) 11426 ENSMUSG00000026447.17 ENSMUSG00000026447 ENSMUST00000239467 Pik3c2b protein_coding Interval_18354 chr10 85155493 85156245 + 0 NA intron (ENSMUSG00000020038.10, intron 2 of 12) protein_coding-intron (ENSMUSG00000020038.10, intron 2 of 12) -4513 ENSMUSG00000020038.10 ENSMUSG00000020038 ENSMUST00000214675 Cry1 protein_coding Interval_5486 chr1 89182942 89184145 + 0 NA Intergenic Intergenic 73438 ENSMUSG00000102083.1 ENSMUSG00000102083 ENSMUST00000191231 Gm5259 processed_pseudogene Interval_66059 chr16 31316013 31316444 + 0 NA Intergenic Intergenic -9007 ENSMUSG00000116973.1 ENSMUSG00000116973 ENSMUST00000231745 AV205837 lincRNA Interval_63381 chr15 100718774 100721006 + 0 NA intron (ENSMUSG00000037280.12, intron 2 of 11) protein_coding-intron (ENSMUSG00000037280.12, intron 2 of 11) 587 ENSMUSG00000037280.12 ENSMUSG00000037280 ENSMUST00000161514 Galnt6 protein_coding Interval_78025 chr18 6948861 6949165 + 0 NA intron (ENSMUSG00000061013.6, intron 2 of 3) protein_coding-intron (ENSMUSG00000061013.6, intron 5 of 6) -12392 ENSMUSG00000117652.1 ENSMUSG00000117652 ENSMUST00000176586 Gm2350 sense_overlapping Interval_155074 chr8 26168821 26170279 + 0 NA Intergenic Intergenic 10757 ENSMUSG00000037214.12 ENSMUSG00000037214 ENSMUST00000209926 Thap1 protein_coding Interval_122195 chr5 19341498 19342311 + 0 NA intron (ENSMUSG00000040003.18, intron 1 of 2) protein_coding-intron (ENSMUSG00000040003.18, intron 1 of 22) -115736 ENSMUSG00000097626.5 ENSMUSG00000097626 ENSMUST00000197496 4921504A21Rik antisense Interval_146893 chr7 55474704 55474893 + 0 NA Intergenic Intergenic 12729 ENSMUSG00000108744.1 ENSMUSG00000108744 ENSMUST00000205703 Gm9367 processed_pseudogene Interval_138502 chr6 88762578 88762785 + 0 NA intron (ENSMUSG00000033174.17, intron 2 of 6) protein_coding-intron (ENSMUSG00000033174.17, intron 2 of 7) 19954 ENSMUSG00000107835.1 ENSMUSG00000107835 ENSMUST00000204286 Gm43999 TEC Interval_53067 chr14 54190828 54191055 + 0 NA promoter-TSS (ENSMUSG00000076900.1) TR_J_gene-promoter-TSS (ENSMUSG00000076900.1) -5 ENSMUSG00000076900.1 ENSMUSG00000076900 ENSMUST00000103712 Traj29 TR_J_gene Interval_26424 chr11 57773251 57774264 + 0 NA intron (ENSMUSG00000020520.14, intron 7 of 11) protein_coding-intron (ENSMUSG00000020520.14, intron 7 of 11) 9330 ENSMUSG00000065806.1 ENSMUSG00000065806 ENSMUST00000083872 n-R5s69 rRNA Interval_88394 chr2 4711126 4712329 + 0 NA Intergenic Intergenic -6104 ENSMUSG00000048186.14 ENSMUSG00000048186 ENSMUST00000138322 Bend7 protein_coding Interval_70284 chr17 8187234 8187596 + 0 NA intron (ENSMUSG00000069135.11, intron 3 of 4) protein_coding-intron (ENSMUSG00000069135.11, intron 9 of 11) 21895 ENSMUSG00000069135.11 ENSMUSG00000069135 ENSMUST00000161898 Fgfr1op protein_coding Interval_108703 chr3 130494111 130495316 + 0 NA intron (ENSMUSG00000058897.18, intron 11 of 37) protein_coding-intron (ENSMUSG00000058897.18, intron 11 of 37) -44776 ENSMUSG00000105011.1 ENSMUSG00000105011 ENSMUST00000196743 Gm43210 TEC Interval_109560 chr3 144453310 144454370 + 0 NA TTS (ENSMUSG00000040151.9) protein_coding-TTS (ENSMUSG00000040151.9) -26168 ENSMUSG00000106416.1 ENSMUSG00000106416 ENSMUST00000198953 Gm5857 processed_pseudogene Interval_171430 chr9 118255240 118256305 + 0 NA Intergenic Intergenic -32014 ENSMUSG00000084608.1 ENSMUSG00000084608 ENSMUST00000122659 Gm22198 misc_RNA Interval_102261 chr3 20089378 20090629 + 0 NA intron (ENSMUSG00000002428.12, intron 14 of 23) protein_coding-intron (ENSMUSG00000002428.12, intron 14 of 24) -18473 ENSMUSG00000002428.12 ENSMUSG00000002428 ENSMUST00000155635 Hltf protein_coding Interval_60646 chr15 75893811 75894798 + 0 NA promoter-TSS (ENSMUSG00000022574.7) protein_coding-promoter-TSS (ENSMUSG00000022574.7) -2671 ENSMUSG00000022574.7 ENSMUSG00000022574 ENSMUST00000230259 Naprt protein_coding Interval_68392 chr16 75676023 75676280 + 0 NA intron (ENSMUSG00000116643.2, intron 1 of 7) transcribed_unprocessed_pseudogene-intron (ENSMUSG00000116643.2, intron 1 of 4) 1088 ENSMUSG00000116643.2 ENSMUSG00000116643 ENSMUST00000231519 Gm30162 transcribed_unprocessed_pseudogene Interval_29647 chr11 85801337 85801609 + 0 NA promoter-TSS (ENSMUSG00000059439.15) protein_coding-promoter-TSS (ENSMUSG00000059439.15) 22661 ENSMUSG00000089508.1 ENSMUSG00000089508 ENSMUST00000158883 Gm23473 rRNA Interval_158076 chr8 78574529 78574727 + 0 NA intron (ENSMUSG00000031684.11, intron 4 of 10) protein_coding-intron (ENSMUSG00000031684.11, intron 4 of 11) -29666 ENSMUSG00000110244.1 ENSMUSG00000110244 ENSMUST00000211775 Gm2253 processed_pseudogene Interval_142910 chr6 146855122 146855657 + 0 NA intron (ENSMUSG00000030292.10, intron 2 of 2) protein_coding-intron (ENSMUSG00000030292.10, intron 2 of 9) -1472 ENSMUSG00000030292.10 ENSMUSG00000030292 ENSMUST00000148099 Smco2 protein_coding Interval_17181 chr10 74258459 74258815 + 0 NA intron (ENSMUSG00000052613.16, intron 8 of 13) protein_coding-intron (ENSMUSG00000052613.16, intron 8 of 13) 311581 ENSMUSG00000052613.16 ENSMUSG00000052613 ENSMUST00000192370 Pcdh15 protein_coding Interval_60868 chr15 77257379 77258565 + 0 NA intron (ENSMUSG00000033565.18, intron 1 of 13) protein_coding-intron (ENSMUSG00000033565.18, intron 1 of 12) -15421 ENSMUSG00000089242.1 ENSMUSG00000089242 ENSMUST00000158617 Gm24056 snRNA Interval_124728 chr5 53582025 53582345 + 0 NA intron (ENSMUSG00000039191.12, intron 2 of 6) protein_coding-intron (ENSMUSG00000039191.12, intron 1 of 10) -34863 ENSMUSG00000107111.1 ENSMUSG00000107111 ENSMUST00000202154 Gm40304 antisense Interval_154961 chr8 25307003 25307964 + 0 NA Intergenic Intergenic -1213 ENSMUSG00000110140.1 ENSMUSG00000110140 ENSMUST00000209774 5430421F17Rik lincRNA Interval_35539 chr12 24619623 24620411 + 0 NA Intergenic Intergenic 18993 ENSMUSG00000066553.5 ENSMUSG00000066553 ENSMUST00000140065 Gm6969 processed_pseudogene Interval_24715 chr11 36106681 36106913 + 0 NA exon (ENSMUSG00000049336.16, exon 13 of 29) protein_coding-exon (ENSMUSG00000049336.16, exon 13 of 29) 26133 ENSMUSG00000087245.1 ENSMUSG00000087245 ENSMUST00000147717 Gm12126 antisense Interval_102130 chr3 18281418 18281843 + 0 NA Intergenic Intergenic -17680 ENSMUSG00000104801.1 ENSMUSG00000104801 ENSMUST00000197097 Gm43834 TEC Interval_104054 chr3 57735379 57736648 + 0 NA promoter-TSS (ENSMUSG00000036503.13) protein_coding-promoter-TSS (ENSMUSG00000036503.13) -107 ENSMUSG00000036503.13 ENSMUSG00000036503 ENSMUST00000197783 Rnf13 protein_coding Interval_121633 chr5 4084841 4086582 + 0 NA intron (ENSMUSG00000001467.5, intron 5 of 5) protein_coding-intron (ENSMUSG00000001467.5, intron 9 of 9) 12140 ENSMUSG00000106535.1 ENSMUSG00000106535 ENSMUST00000198500 Gm43031 sense_intronic Interval_79326 chr18 30529096 30531708 + 0 NA Intergenic Intergenic -35029 ENSMUSG00000055771.2 ENSMUSG00000055771 ENSMUST00000069529 Gm7936 processed_pseudogene Interval_36107 chr12 35896314 35897564 + 0 NA Intergenic Intergenic -28683 ENSMUSG00000036231.5 ENSMUSG00000036231 ENSMUST00000154042 Agr3 protein_coding Interval_162240 chr8 126382210 126383275 + 0 NA intron (ENSMUSG00000057060.8, intron 4 of 7) protein_coding-intron (ENSMUSG00000057060.8, intron 3 of 6) -39786 ENSMUSG00000051671.7 ENSMUSG00000051671 ENSMUST00000211868 Coa6 protein_coding Interval_40022 chr12 100529200 100529710 + 0 NA Intergenic Intergenic 44521 ENSMUSG00000113687.1 ENSMUSG00000113687 ENSMUST00000223531 Gm49703 TEC Interval_131437 chr5 137189063 137190045 + 0 NA promoter-TSS (ENSMUSG00000106190.1) processed_pseudogene-promoter-TSS (ENSMUSG00000106190.1) -387 ENSMUSG00000106190.1 ENSMUSG00000106190 ENSMUST00000199527 Gm20768 processed_pseudogene Interval_26630 chr11 59312868 59313677 + 0 NA intron (ENSMUSG00000000126.11, intron 1 of 3) protein_coding-intron (ENSMUSG00000000126.11, intron 1 of 3) 6342 ENSMUSG00000000126.11 ENSMUSG00000000126 ENSMUST00000108783 Wnt9a protein_coding Interval_160005 chr8 105700344 105702261 + 0 NA promoter-TSS (ENSMUSG00000038000.10) protein_coding-promoter-TSS (ENSMUSG00000038000.10) 151 ENSMUSG00000005699.16 ENSMUSG00000005699 ENSMUST00000212430 Pard6a protein_coding Interval_124336 chr5 44143451 44144625 + 0 NA TTS (ENSMUSG00000105263.1) TEC-TTS (ENSMUSG00000105263.1) 6058 ENSMUSG00000105263.1 ENSMUSG00000105263 ENSMUST00000200473 Gm42427 TEC Interval_57037 chr15 5029190 5031020 + 0 NA intron (ENSMUSG00000079105.4, intron 8 of 17) protein_coding-intron (ENSMUSG00000079105.4, intron 8 of 17) -5255 ENSMUSG00000065714.1 ENSMUSG00000065714 ENSMUST00000083780 Gm25652 snRNA Interval_159287 chr8 92791947 92792452 + 0 NA Intergenic Intergenic -47985 ENSMUSG00000031740.8 ENSMUSG00000031740 ENSMUST00000211567 Mmp2 protein_coding Interval_18919 chr10 93131900 93132106 + 0 NA Intergenic Intergenic -30782 ENSMUSG00000089214.1 ENSMUSG00000089214 ENSMUST00000158589 Mir1931 miRNA Interval_76856 chr17 84551303 84551690 + 0 NA promoter-TSS (ENSMUSG00000117391.1) antisense-promoter-TSS (ENSMUSG00000117391.1) -253 ENSMUSG00000117391.1 ENSMUSG00000117391 ENSMUST00000234072 4930500A05Rik antisense Interval_52706 chr14 48753688 48754779 + 0 NA intron (ENSMUSG00000098682.8, intron 3 of 3) lincRNA-intron (ENSMUSG00000098682.8, intron 4 of 4) -13424 ENSMUSG00000115579.1 ENSMUSG00000115579 ENSMUST00000227438 Gm49156 lincRNA Interval_77167 chr17 87035998 87036949 + 0 NA TTS (ENSMUSG00000024146.9) protein_coding-TTS (ENSMUSG00000024146.9) 10863 ENSMUSG00000024146.9 ENSMUSG00000024146 ENSMUST00000160269 Cript protein_coding Interval_129157 chr5 117901033 117901569 + 0 NA intron (ENSMUSG00000029361.18, intron 7 of 27) protein_coding-intron (ENSMUSG00000029361.18, intron 8 of 28) 28488 ENSMUSG00000104071.1 ENSMUSG00000104071 ENSMUST00000194276 Gm37028 TEC Interval_59620 chr15 56486803 56487385 + 0 NA Intergenic Intergenic 72081 ENSMUSG00000115064.1 ENSMUSG00000115064 ENSMUST00000228801 Gm49213 processed_pseudogene Interval_84936 chr19 19205012 19205611 + 0 NA Intergenic Intergenic -70588 ENSMUSG00000088907.1 ENSMUSG00000088907 ENSMUST00000158282 Gm25437 snoRNA Interval_141832 chr6 134804597 134805803 + 0 NA Intergenic Intergenic -30644 ENSMUSG00000108233.1 ENSMUSG00000108233 ENSMUST00000203947 Gm44084 processed_pseudogene Interval_2150 chr1 36731722 36732389 + 0 NA intron (ENSMUSG00000102416.4, intron 4 of 8) protein_coding-intron (ENSMUSG00000102416.4, intron 4 of 4) 12737 ENSMUSG00000104237.1 ENSMUSG00000104237 ENSMUST00000193853 Gm33533 lincRNA Interval_105253 chr3 84219380 84221607 + 0 NA intron (ENSMUSG00000027993.16, intron 1 of 4) protein_coding-intron (ENSMUSG00000027993.16, intron 1 of 11) 46389 ENSMUSG00000104043.1 ENSMUSG00000104043 ENSMUST00000193882 Gm6525 protein_coding Interval_146327 chr7 45354971 45356350 + 0 NA intron (ENSMUSG00000003863.18, intron 10 of 29) protein_coding-intron (ENSMUSG00000003863.18, intron 10 of 29) -10503 ENSMUSG00000091510.4 ENSMUSG00000091510 ENSMUST00000058665 Mtag2 antisense Interval_142077 chr6 136986393 136987153 + 0 NA exon (ENSMUSG00000107734.1, exon 1 of 1) TEC-exon (ENSMUSG00000107734.1, exon 1 of 1) 177 ENSMUSG00000107734.1 ENSMUSG00000107734 ENSMUST00000203175 Gm30055 TEC Interval_91031 chr2 34554218 34554868 + 0 NA intron (ENSMUSG00000038696.14, intron 7 of 10) protein_coding-intron (ENSMUSG00000038696.14, intron 6 of 10) -10456 ENSMUSG00000081992.1 ENSMUSG00000081992 ENSMUST00000119822 Gm13408 processed_pseudogene Interval_108016 chr3 119983622 119984298 + 0 NA Intergenic Intergenic 15229 ENSMUSG00000104726.1 ENSMUSG00000104726 ENSMUST00000195974 Gm18384 processed_pseudogene Interval_85890 chr19 32773636 32774814 + 0 NA intron (ENSMUSG00000013663.7, intron 1 of 4) protein_coding-intron (ENSMUSG00000013663.7, intron 1 of 8) -37000 ENSMUSG00000013663.7 ENSMUSG00000013663 ENSMUST00000154806 Pten protein_coding Interval_100379 chr2 168717154 168717705 + 0 NA intron (ENSMUSG00000027546.15, intron 1 of 4) protein_coding-intron (ENSMUSG00000027546.15, intron 1 of 27) 24535 ENSMUSG00000027546.15 ENSMUSG00000027546 ENSMUST00000156555 Atp9a protein_coding Interval_153800 chr8 8710864 8712280 + 0 NA promoter-TSS (ENSMUSG00000109117.1) processed_pseudogene-promoter-TSS (ENSMUSG00000109117.1) 88 ENSMUSG00000109117.1 ENSMUSG00000109117 ENSMUST00000208349 Gm18393 processed_pseudogene Interval_76996 chr17 85464088 85465414 + 0 NA Intergenic Intergenic -33882 ENSMUSG00000097803.1 ENSMUSG00000097803 ENSMUST00000181130 Rpl31-ps16 processed_pseudogene Interval_173378 chrX 85775983 85777491 + 0 NA promoter-TSS (ENSMUSG00000025059.16) protein_coding-promoter-TSS (ENSMUSG00000025059.16) -100 ENSMUSG00000025059.16 ENSMUSG00000025059 ENSMUST00000125081 Gk protein_coding Interval_115745 chr4 103247092 103247863 + 0 NA intron (ENSMUSG00000028520.12, intron 4 of 7) protein_coding-intron (ENSMUSG00000028520.12, intron 5 of 8) 29775 ENSMUSG00000107726.1 ENSMUSG00000107726 ENSMUST00000204816 Gm44037 lincRNA Interval_153978 chr8 11601916 11602480 + 0 NA Intergenic Intergenic 22428 ENSMUSG00000031508.14 ENSMUSG00000031508 ENSMUST00000210876 Ankrd10 protein_coding Interval_83640 chr19 3413962 3415091 + 0 NA promoter-TSS (ENSMUSG00000024907.7) protein_coding-promoter-TSS (ENSMUSG00000024907.7) 18 ENSMUSG00000024907.7 ENSMUSG00000024907 ENSMUST00000025842 Gal protein_coding Interval_12974 chr10 8851560 8852727 + 0 NA intron (ENSMUSG00000015305.6, intron 1 of 3) protein_coding-intron (ENSMUSG00000015305.6, intron 1 of 19) 9300 ENSMUSG00000111165.1 ENSMUSG00000111165 ENSMUST00000214016 4930553I21Rik TEC Interval_44966 chr13 51010840 51011429 + 0 NA Intergenic Intergenic -2952 ENSMUSG00000084609.2 ENSMUSG00000084609 ENSMUST00000122660 Gm22199 misc_RNA Interval_168230 chr9 78059482 78060506 + 0 NA intron (ENSMUSG00000023333.8, intron 3 of 5) protein_coding-intron (ENSMUSG00000023333.8, intron 3 of 5) 8070 ENSMUSG00000023333.8 ENSMUSG00000023333 ENSMUST00000024104 Gcm1 protein_coding Interval_16439 chr10 62872806 62875086 + 0 NA intron (ENSMUSG00000047146.17, intron 2 of 12) protein_coding-intron (ENSMUSG00000047146.17, intron 1 of 10) 13566 ENSMUSG00000047146.17 ENSMUSG00000047146 ENSMUST00000218782 Tet1 protein_coding Interval_97851 chr2 144437789 144439009 + 0 NA Intergenic Intergenic -25996 ENSMUSG00000083674.3 ENSMUSG00000083674 ENSMUST00000137929 Zfp133-ps transcribed_unitary_pseudogene Interval_64066 chr16 7049418 7049883 + 0 NA intron (ENSMUSG00000008658.16, intron 4 of 11) protein_coding-intron (ENSMUSG00000008658.16, intron 3 of 14) -144097 ENSMUSG00000008658.16 ENSMUSG00000008658 ENSMUST00000231031 Rbfox1 protein_coding Interval_105955 chr3 90292393 90294257 + 0 NA promoter-TSS (ENSMUSG00000042390.9) protein_coding-promoter-TSS (ENSMUSG00000042390.9) 658 ENSMUSG00000105350.1 ENSMUSG00000105350 ENSMUST00000200437 4930537H20Rik antisense Interval_86773 chr19 43752645 43753607 + 0 NA promoter-TSS (ENSMUSG00000040018.9) protein_coding-promoter-TSS (ENSMUSG00000040018.9) -11 ENSMUSG00000025193.14 ENSMUSG00000025193 ENSMUST00000123564 Cutc protein_coding Interval_29562 chr11 84918366 84919738 + 0 NA Intergenic Intergenic -2728 ENSMUSG00000020526.12 ENSMUSG00000020526 ENSMUST00000156046 Znhit3 protein_coding Interval_131373 chr5 136772969 136773956 + 0 NA promoter-TSS (ENSMUSG00000004415.15) protein_coding-promoter-TSS (ENSMUSG00000004415.15) 64847 ENSMUSG00000004415.15 ENSMUSG00000004415 ENSMUST00000140245 Col26a1 protein_coding Interval_39839 chr12 98935281 98936365 + 0 NA intron (ENSMUSG00000021013.16, intron 1 of 8) protein_coding-intron (ENSMUSG00000021013.16, intron 1 of 14) -7680 ENSMUSG00000021013.16 ENSMUSG00000021013 ENSMUST00000139298 Ttc8 protein_coding Interval_109613 chr3 145168392 145169186 + 0 NA Intergenic Intergenic 19771 ENSMUSG00000028256.16 ENSMUSG00000028256 ENSMUST00000200353 Odf2l protein_coding Interval_64480 chr16 11867937 11868803 + 0 NA intron (ENSMUSG00000065979.12, intron 2 of 2) protein_coding-intron (ENSMUSG00000065979.12, intron 2 of 3) -32993 ENSMUSG00000055015.5 ENSMUSG00000055015 ENSMUST00000068397 Gm9961 lincRNA Interval_21737 chr11 4031249 4032283 + 0 NA promoter-TSS (ENSMUSG00000019368.13) protein_coding-promoter-TSS (ENSMUSG00000019368.13) 301 ENSMUSG00000019368.13 ENSMUSG00000019368 ENSMUST00000134482 Sec14l4 protein_coding Interval_95428 chr2 109249205 109249520 + 0 NA intron (ENSMUSG00000057234.9, intron 2 of 6) protein_coding-intron (ENSMUSG00000057234.9, intron 2 of 5) 31386 ENSMUSG00000057234.9 ENSMUSG00000057234 ENSMUST00000145535 Mettl15 protein_coding Interval_96209 chr2 120539536 120540444 + 0 NA promoter-TSS (ENSMUSG00000027288.16) protein_coding-promoter-TSS (ENSMUSG00000027288.16) -130 ENSMUSG00000027288.16 ENSMUSG00000027288 ENSMUST00000147353 Zfp106 protein_coding Interval_140398 chr6 117840739 117841851 + 0 NA promoter-TSS (ENSMUSG00000059689.15) protein_coding-promoter-TSS (ENSMUSG00000059689.15) 41 ENSMUSG00000059689.15 ENSMUSG00000059689 ENSMUST00000132644 Zfp637 protein_coding Interval_84198 chr19 8705061 8707318 + 0 NA TTS (ENSMUSG00000010095.13) protein_coding-TTS (ENSMUSG00000010095.13) 17009 ENSMUSG00000010095.13 ENSMUSG00000010095 ENSMUST00000205538 Slc3a2 protein_coding Interval_148298 chr7 80360798 80361395 + 0 NA exon (ENSMUSG00000038886.10, exon 16 of 24) protein_coding-exon (ENSMUSG00000038886.10, exon 16 of 24) -1185 ENSMUSG00000038886.10 ENSMUSG00000038886 ENSMUST00000205436 Man2a2 protein_coding Interval_111972 chr4 32909032 32909485 + 0 NA intron (ENSMUSG00000040183.13, intron 1 of 16) protein_coding-intron (ENSMUSG00000040183.13, intron 1 of 16) 16572 ENSMUSG00000083565.1 ENSMUSG00000083565 ENSMUST00000119904 Gm11941 processed_pseudogene Interval_59926 chr15 62010666 62011259 + 0 NA Intergenic Intergenic 25040 ENSMUSG00000022346.16 ENSMUSG00000022346 ENSMUST00000160009 Myc protein_coding Interval_3315 chr1 56751280 56751560 + 0 NA Intergenic Intergenic -113985 ENSMUSG00000045336.5 ENSMUSG00000045336 ENSMUST00000062085 Hsfy2 protein_coding Interval_145677 chr7 37290367 37290973 + 0 NA Intergenic Intergenic -8595 ENSMUSG00000099715.2 ENSMUSG00000099715 ENSMUST00000190250 Gm28077 lincRNA Interval_53005 chr14 53360602 53361305 + 0 NA Intergenic Intergenic -1314 ENSMUSG00000076823.3 ENSMUSG00000076823 ENSMUST00000103634 Trav13n-4 TR_V_gene Interval_8626 chr1 144492473 144492982 + 0 NA Intergenic Intergenic 58837 ENSMUSG00000098509.2 ENSMUSG00000098509 ENSMUST00000184189 Rgs21 protein_coding Interval_146904 chr7 55734997 55735266 + 0 NA Intergenic Intergenic 32977 ENSMUSG00000088640.1 ENSMUSG00000088640 ENSMUST00000158015 Gm26482 snRNA Interval_11884 chr1 186728674 186730254 + 0 NA intron (ENSMUSG00000001305.5, intron 3 of 3) protein_coding-intron (ENSMUSG00000001305.5, intron 4 of 4) -16366 ENSMUSG00000102619.1 ENSMUSG00000102619 ENSMUST00000194722 Gm37849 TEC Interval_149235 chr7 96521369 96522412 + 0 NA promoter-TSS (ENSMUSG00000048078.16) protein_coding-promoter-TSS (ENSMUSG00000048078.16) -85873 ENSMUSG00000082780.2 ENSMUSG00000082780 ENSMUST00000117302 Rps11-ps5 processed_pseudogene Interval_128609 chr5 114286403 114288160 + 0 NA Intergenic Intergenic -13532 ENSMUSG00000042002.11 ENSMUSG00000042002 ENSMUST00000147953 Foxn4 protein_coding Interval_111544 chr4 22746892 22747177 + 0 NA promoter-TSS (ENSMUSG00000088809.1) miRNA-promoter-TSS (ENSMUSG00000088809.1) -97 ENSMUSG00000088809.1 ENSMUSG00000088809 ENSMUST00000158184 Gm24078 miRNA Interval_122966 chr5 28019611 28020448 + 0 NA exon (ENSMUSG00000097673.1, exon 3 of 3) lincRNA-exon (ENSMUSG00000097673.1, exon 3 of 3) 16377 ENSMUSG00000106030.1 ENSMUSG00000106030 ENSMUST00000196656 Gm43611 TEC Interval_167682 chr9 71889555 71889826 + 0 NA exon (ENSMUSG00000032228.16, exon 2 of 7) protein_coding-exon (ENSMUSG00000032228.16, exon 2 of 7) 9763 ENSMUSG00000102939.1 ENSMUSG00000102939 ENSMUST00000194817 Gm38111 TEC Interval_65615 chr16 24186175 24186392 + 0 NA exon (ENSMUSG00000115869.1, exon 8 of 8) sense_intronic-exon (ENSMUSG00000115869.1, exon 8 of 8) -17722 ENSMUSG00000116173.1 ENSMUSG00000116173 ENSMUST00000230625 Gm32126 sense_intronic Interval_1524 chr1 24708467 24708870 + 0 NA intron (ENSMUSG00000073725.8, intron 5 of 15) protein_coding-intron (ENSMUSG00000073725.8, intron 5 of 15) 30038 ENSMUSG00000073725.8 ENSMUSG00000073725 ENSMUST00000190195 Lmbrd1 protein_coding Interval_23860 chr11 27213464 27214203 + 0 NA Intergenic Intergenic 105145 ENSMUSG00000088438.1 ENSMUSG00000088438 ENSMUST00000157813 Gm25387 snoRNA Interval_125929 chr5 75877744 75878625 + 0 NA Intergenic Intergenic -25226 ENSMUSG00000100936.1 ENSMUSG00000100936 ENSMUST00000187685 Gm28865 lincRNA Interval_170830 chr9 111022595 111023030 + 0 NA TTS (ENSMUSG00000032496.7) protein_coding-TTS (ENSMUSG00000032496.7) -1574 ENSMUSG00000032496.7 ENSMUSG00000032496 ENSMUST00000197575 Ltf protein_coding Interval_72018 chr17 27584755 27585240 + 0 NA intron (ENSMUSG00000117338.1, intron 6 of 8) protein_coding-intron (ENSMUSG00000024213.14, intron 2 of 4) 12218 ENSMUSG00000024213.14 ENSMUSG00000024213 ENSMUST00000146321 Nudt3 protein_coding Interval_119532 chr4 138197471 138197763 + 0 NA intron (ENSMUSG00000028760.16, intron 30 of 33) protein_coding-intron (ENSMUSG00000028760.16, intron 31 of 34) -18097 ENSMUSG00000078519.3 ENSMUSG00000078519 ENSMUST00000146658 2310026L22Rik lincRNA Interval_79651 chr18 34252748 34253124 + 0 NA intron (ENSMUSG00000005871.15, intron 1 of 1) protein_coding-intron (ENSMUSG00000005871.15, intron 1 of 8) 32012 ENSMUSG00000005871.15 ENSMUSG00000005871 ENSMUST00000167136 Apc protein_coding Interval_154324 chr8 14473074 14473360 + 0 NA intron (ENSMUSG00000047495.15, intron 2 of 2) protein_coding-intron (ENSMUSG00000047495.15, intron 2 of 14) 123039 ENSMUSG00000106670.1 ENSMUSG00000106670 ENSMUST00000199602 Gm44347 miRNA Interval_155192 chr8 27343731 27344005 + 0 NA promoter-TSS (ENSMUSG00000071138.4) protein_coding-promoter-TSS (ENSMUSG00000071138.4) -526 ENSMUSG00000071138.4 ENSMUSG00000071138 ENSMUST00000095375 Tex24 protein_coding Interval_132777 chr5 147797602 147798159 + 0 NA Intergenic Intergenic -24365 ENSMUSG00000107065.1 ENSMUSG00000107065 ENSMUST00000202661 Gm43155 processed_pseudogene Interval_28447 chr11 75937235 75937897 + 0 NA intron (ENSMUSG00000020847.15, intron 1 of 5) protein_coding-intron (ENSMUSG00000020847.15, intron 1 of 5) 863 ENSMUSG00000020847.15 ENSMUSG00000020847 ENSMUST00000152035 Rph3al protein_coding Interval_163999 chr9 30717836 30718129 + 0 NA Intergenic Intergenic 34900 ENSMUSG00000111249.1 ENSMUSG00000111249 ENSMUST00000215919 Gm47717 processed_pseudogene Interval_73780 chr17 43581028 43582637 + 0 NA intron (ENSMUSG00000023913.17, intron 1 of 2) protein_coding-intron (ENSMUSG00000023913.17, intron 1 of 11) 10600 ENSMUSG00000090307.7 ENSMUSG00000090307 ENSMUST00000164150 1700071M16Rik antisense Interval_171685 chr9 120149225 120150646 + 0 NA intron (ENSMUSG00000032517.16, intron 1 of 2) protein_coding-intron (ENSMUSG00000032517.16, intron 1 of 3) 218 ENSMUSG00000032517.16 ENSMUSG00000032517 ENSMUST00000214008 Mobp protein_coding Interval_23565 chr11 23394914 23396023 + 0 NA intron (ENSMUSG00000056342.16, intron 29 of 79) protein_coding-intron (ENSMUSG00000056342.16, intron 29 of 79) 84199 ENSMUSG00000065591.1 ENSMUSG00000065591 ENSMUST00000083657 Gm22753 snRNA Interval_149185 chr7 96105711 96105926 + 0 NA Intergenic Intergenic 97718 ENSMUSG00000108528.1 ENSMUSG00000108528 ENSMUST00000205708 Gm8319 processed_pseudogene Interval_59575 chr15 55499602 55499850 + 0 NA intron (ENSMUSG00000022371.16, intron 14 of 17) protein_coding-intron (ENSMUSG00000022371.16, intron 44 of 47) -20349 ENSMUSG00000115414.1 ENSMUSG00000115414 ENSMUST00000227284 Gm49257 processed_transcript Interval_101859 chr3 10213765 10215505 + 0 NA Intergenic Intergenic -6077 ENSMUSG00000062515.3 ENSMUSG00000062515 ENSMUST00000191757 Fabp4 protein_coding Interval_7075 chr1 125426822 125427290 + 0 NA intron (ENSMUSG00000026341.16, intron 1 of 10) protein_coding-intron (ENSMUSG00000026341.16, intron 2 of 12) 8425 ENSMUSG00000026341.16 ENSMUSG00000026341 ENSMUST00000188827 Actr3 protein_coding Interval_23066 chr11 19593474 19593757 + 0 NA Intergenic Intergenic 34446 ENSMUSG00000086911.1 ENSMUSG00000086911 ENSMUST00000146531 Gm12027 lincRNA Interval_64870 chr16 16844772 16845170 + 0 NA Intergenic Intergenic 4727 ENSMUSG00000116729.1 ENSMUSG00000116729 ENSMUST00000231706 Gm49644 processed_pseudogene Interval_97697 chr2 142883386 142883729 + 0 NA intron (ENSMUSG00000038844.10, intron 1 of 26) protein_coding-intron (ENSMUSG00000038844.10, intron 1 of 25) 17962 ENSMUSG00000038844.10 ENSMUSG00000038844 ENSMUST00000212106 Kif16b protein_coding Interval_137879 chr6 83121072 83122302 + 0 NA promoter-TSS (ENSMUSG00000030035.14) protein_coding-promoter-TSS (ENSMUSG00000030035.14) -413 ENSMUSG00000030035.14 ENSMUSG00000030035 ENSMUST00000205023 Wbp1 protein_coding Interval_49728 chr13 114292707 114293654 + 0 NA intron (ENSMUSG00000021764.8, intron 3 of 3) protein_coding-intron (ENSMUSG00000021764.8, intron 4 of 4) -8799 ENSMUSG00000114707.1 ENSMUSG00000114707 ENSMUST00000224003 Gm47558 TEC Interval_11937 chr1 187330660 187332183 + 0 NA intron (ENSMUSG00000039210.16, intron 7 of 8) protein_coding-intron (ENSMUSG00000039210.16, intron 8 of 9) 46048 ENSMUSG00000104245.1 ENSMUSG00000104245 ENSMUST00000192285 Gm38155 antisense Interval_108377 chr3 126374366 126374663 + 0 NA intron (ENSMUSG00000046561.9, intron 1 of 1) protein_coding-intron (ENSMUSG00000046561.9, intron 1 of 1) 10830 ENSMUSG00000046561.9 ENSMUSG00000046561 ENSMUST00000093976 Arsj protein_coding Interval_53377 chr14 56766364 56766804 + 0 NA intron (ENSMUSG00000021938.12, intron 1 of 4) protein_coding-intron (ENSMUSG00000021938.12, intron 2 of 8) 11343 ENSMUSG00000021938.12 ENSMUSG00000021938 ENSMUST00000168575 Pspc1 protein_coding Interval_28490 chr11 76319275 76320606 + 0 NA intron (ENSMUSG00000020844.6, intron 1 of 7) protein_coding-intron (ENSMUSG00000020844.6, intron 1 of 7) 70728 ENSMUSG00000038046.4 ENSMUSG00000038046 ENSMUST00000155526 Mrm3 protein_coding Interval_68210 chr16 68267075 68267519 + 0 NA Intergenic Intergenic -102442 ENSMUSG00000116638.1 ENSMUSG00000116638 ENSMUST00000232077 Gm49650 processed_pseudogene Interval_6425 chr1 107894020 107894306 + 0 NA Intergenic Intergenic 1189 ENSMUSG00000077237.1 ENSMUSG00000077237 ENSMUST00000104049 Gm22438 snoRNA Interval_174293 chrX 144031291 144031659 + 0 NA Intergenic Intergenic -98425 ENSMUSG00000031285.14 ENSMUSG00000031285 ENSMUST00000125768 Dcx protein_coding Interval_40379 chr12 104521209 104521972 + 0 NA intron (ENSMUSG00000112954.1, intron 1 of 3) lincRNA-intron (ENSMUSG00000112954.1, intron 2 of 2) 1622 ENSMUSG00000112954.1 ENSMUSG00000112954 ENSMUST00000222329 Gm49732 lincRNA Interval_144977 chr7 29224885 29225707 + 0 NA intron (ENSMUSG00000046410.10, intron 2 of 2) protein_coding-intron (ENSMUSG00000046410.10, intron 2 of 2) 6011 ENSMUSG00000046410.10 ENSMUSG00000046410 ENSMUST00000208807 Kcnk6 protein_coding Interval_84978 chr19 20917958 20918170 + 0 NA intron (ENSMUSG00000024749.9, intron 2 of 20) protein_coding-intron (ENSMUSG00000024749.9, intron 2 of 20) -4328 ENSMUSG00000118293.1 ENSMUSG00000118293 ENSMUST00000238088 Gm32750 antisense Interval_169641 chr9 99642003 99642412 + 0 NA intron (ENSMUSG00000037784.14, intron 4 of 15) protein_coding-intron (ENSMUSG00000037784.14, intron 4 of 15) -8009 ENSMUSG00000037784.14 ENSMUSG00000037784 ENSMUST00000190893 Dzip1l protein_coding Interval_21835 chr11 4653938 4655750 + 0 NA intron (ENSMUSG00000020412.16, intron 5 of 18) protein_coding-intron (ENSMUSG00000020412.16, intron 5 of 19) 17097 ENSMUSG00000020412.16 ENSMUSG00000020412 ENSMUST00000109930 Ascc2 protein_coding Interval_173960 chrX 116747371 116747734 + 0 NA Intergenic Intergenic -1290 ENSMUSG00000088518.1 ENSMUSG00000088518 ENSMUST00000157893 Gm24438 snoRNA Interval_10081 chr1 165667244 165667579 + 0 NA intron (ENSMUSG00000040723.14, intron 2 of 2) protein_coding-intron (ENSMUSG00000040723.14, intron 1 of 6) -22723 ENSMUSG00000104517.1 ENSMUSG00000104517 ENSMUST00000192126 Gm18407 processed_pseudogene Interval_125737 chr5 73691059 73692556 + 0 NA Intergenic Intergenic 32546 ENSMUSG00000029155.16 ENSMUSG00000029155 ENSMUST00000178631 Spata18 protein_coding Interval_170824 chr9 110994693 110995156 + 0 NA intron (ENSMUSG00000057802.8, intron 2 of 6) processed_transcript-intron (ENSMUSG00000057802.8, intron 2 of 6) -5211 ENSMUSG00000066319.6 ENSMUSG00000066319 ENSMUST00000198702 Rtp3 protein_coding Interval_138931 chr6 93616723 93617144 + 0 NA Intergenic Intergenic 33292 ENSMUSG00000107739.1 ENSMUSG00000107739 ENSMUST00000203479 Gm7812 processed_pseudogene Interval_126350 chr5 86890165 86890389 + 0 NA exon (ENSMUSG00000029260.15, exon 6 of 6) protein_coding-exon (ENSMUSG00000029260.15, exon 6 of 6) 16660 ENSMUSG00000029260.15 ENSMUSG00000029260 ENSMUST00000113333 Ugt2b34 protein_coding Interval_56239 chr14 114576883 114577250 + 0 NA Intergenic Intergenic 244159 ENSMUSG00000103140.1 ENSMUSG00000103140 ENSMUST00000194590 Gm37495 TEC Interval_119192 chr4 136106472 136107394 + 0 NA Intergenic Intergenic -30563 ENSMUSG00000088614.1 ENSMUSG00000088614 ENSMUST00000157989 Gm26001 snRNA Interval_172976 chrX 59133426 59135505 + 0 NA promoter-TSS (ENSMUSG00000031137.17) protein_coding-promoter-TSS (ENSMUSG00000031137.17) -36729 ENSMUSG00000070110.2 ENSMUSG00000070110 ENSMUST00000093602 Mir504 miRNA Interval_102747 chr3 30756773 30756961 + 0 NA exon (ENSMUSG00000051860.13, exon 1 of 1) protein_coding-exon (ENSMUSG00000051860.13, exon 1 of 1) 645 ENSMUSG00000051860.13 ENSMUSG00000051860 ENSMUST00000192872 Samd7 protein_coding Interval_137549 chr6 73056571 73056758 + 0 NA intron (ENSMUSG00000052861.13, intron 60 of 75) protein_coding-intron (ENSMUSG00000052861.13, intron 61 of 76) 44621 ENSMUSG00000107546.1 ENSMUSG00000107546 ENSMUST00000204577 Gm20560 antisense Interval_130391 chr5 127241268 127242859 + 0 NA intron (ENSMUSG00000034324.16, intron 1 of 8) protein_coding-intron (ENSMUSG00000034324.16, intron 1 of 8) 39531 ENSMUSG00000087104.7 ENSMUSG00000087104 ENSMUST00000154361 Tmem132cos antisense Interval_105505 chr3 87114919 87116128 + 0 NA intron (ENSMUSG00000041734.15, intron 2 of 15) protein_coding-intron (ENSMUSG00000041734.15, intron 2 of 13) -42170 ENSMUSG00000102893.1 ENSMUSG00000102893 ENSMUST00000192571 Gm37855 lincRNA Interval_166684 chr9 61899604 61900351 + 0 NA Intergenic Intergenic 14565 ENSMUSG00000007892.8 ENSMUSG00000007892 ENSMUST00000008036 Rplp1 protein_coding Interval_61702 chr15 83489015 83489720 + 0 NA intron (ENSMUSG00000022442.16, intron 11 of 11) protein_coding-intron (ENSMUSG00000022442.16, intron 11 of 11) 21426 ENSMUSG00000022442.16 ENSMUSG00000022442 ENSMUST00000154401 Ttll1 protein_coding Interval_21114 chr10 126611436 126612077 + 0 NA Intergenic Intergenic -24952 ENSMUSG00000112435.1 ENSMUSG00000112435 ENSMUST00000220216 Gm47965 processed_pseudogene Interval_60623 chr15 75768909 75769194 + 0 NA intron (ENSMUSG00000075600.3, intron 9 of 11) protein_coding-intron (ENSMUSG00000075600.3, intron 9 of 11) 9192 ENSMUSG00000077416.1 ENSMUSG00000077416 ENSMUST00000104228 Gm23747 snoRNA Interval_79247 chr18 27421670 27422168 + 0 NA Intergenic Intergenic -176725 ENSMUSG00000046636.5 ENSMUSG00000046636 ENSMUST00000050143 Gm7729 unprocessed_pseudogene Interval_164715 chr9 40770457 40771167 + 0 NA intron (ENSMUSG00000032024.10, intron 2 of 6) protein_coding-intron (ENSMUSG00000032024.10, intron 2 of 6) -8557 ENSMUSG00000111189.1 ENSMUSG00000111189 ENSMUST00000216792 Gm48293 antisense Interval_46530 chr13 66877749 66879380 + 0 NA Intergenic Intergenic -2854 ENSMUSG00000114374.1 ENSMUSG00000114374 ENSMUST00000225178 Gm7911 processed_pseudogene Interval_88144 chr19 59585592 59586747 + 0 NA Intergenic Intergenic 45718 ENSMUSG00000118118.1 ENSMUSG00000118118 ENSMUST00000238140 Gm18161 processed_pseudogene Interval_151621 chr7 125420137 125420428 + 0 NA Intergenic Intergenic -2168 ENSMUSG00000108814.1 ENSMUSG00000108814 ENSMUST00000206549 Gm30717 lincRNA Interval_117686 chr4 125544847 125546625 + 0 NA intron (ENSMUSG00000001985.9, intron 1 of 15) protein_coding-intron (ENSMUSG00000001985.9, intron 1 of 15) 40987 ENSMUSG00000094403.1 ENSMUSG00000094403 ENSMUST00000102081 Mir692-2 miRNA Interval_83104 chr18 81366015 81367079 + 0 NA Intergenic Intergenic 91352 ENSMUSG00000118227.1 ENSMUSG00000118227 ENSMUST00000236435 Gm30288 lincRNA Interval_76731 chr17 83731989 83733374 + 0 NA intron (ENSMUSG00000055817.18, intron 1 of 2) protein_coding-intron (ENSMUSG00000055817.18, intron 3 of 16) 3517 ENSMUSG00000055817.18 ENSMUSG00000055817 ENSMUST00000175920 Mta3 protein_coding Interval_129488 chr5 120514960 120515163 + 0 NA intron (ENSMUSG00000032754.14, intron 2 of 2) protein_coding-intron (ENSMUSG00000032754.14, intron 2 of 15) 3791 ENSMUSG00000032754.14 ENSMUSG00000032754 ENSMUST00000123326 Slc8b1 protein_coding Interval_142967 chr6 147568273 147568613 + 0 NA intron (ENSMUSG00000030301.17, intron 7 of 12) protein_coding-intron (ENSMUSG00000030301.17, intron 7 of 12) -37134 ENSMUSG00000107793.1 ENSMUSG00000107793 ENSMUST00000203567 4933406L23Rik TEC Interval_143263 chr7 4835854 4836912 + 0 NA promoter-TSS (ENSMUSG00000053550.13) protein_coding-promoter-TSS (ENSMUSG00000053550.13) -5256 ENSMUSG00000053550.13 ENSMUSG00000053550 ENSMUST00000132806 Shisa7 protein_coding Interval_45345 chr13 54589626 54590876 + 0 NA promoter-TSS (ENSMUSG00000025868.6) protein_coding-promoter-TSS (ENSMUSG00000025868.6) 44 ENSMUSG00000025868.6 ENSMUSG00000025868 ENSMUST00000026986 Higd2a protein_coding Interval_6029 chr1 94150659 94151695 + 0 NA Intergenic Intergenic -53240 ENSMUSG00000100990.1 ENSMUSG00000100990 ENSMUST00000190284 Gm7891 processed_pseudogene Interval_57156 chr15 7057914 7058279 + 0 NA Intergenic Intergenic -32518 ENSMUSG00000054263.12 ENSMUSG00000054263 ENSMUST00000171588 Lifr protein_coding Interval_118069 chr4 128753007 128753921 + 0 NA TTS (ENSMUSG00000028796.17) protein_coding-TTS (ENSMUSG00000028796.17) -1900 ENSMUSG00000028794.13 ENSMUSG00000028794 ENSMUST00000030585 A3galt2 protein_coding Interval_19907 chr10 111123131 111123347 + 0 NA Intergenic Intergenic -2612 ENSMUSG00000091086.2 ENSMUSG00000091086 ENSMUST00000171120 Rpl6l processed_pseudogene Interval_36215 chr12 39665596 39668309 + 0 NA Intergenic Intergenic 45537 ENSMUSG00000077269.1 ENSMUSG00000077269 ENSMUST00000104081 Gm24434 snoRNA Interval_137358 chr6 71678616 71679337 + 0 NA Intergenic Intergenic -4322 ENSMUSG00000108813.1 ENSMUSG00000108813 ENSMUST00000205423 Rpl19-ps9 processed_pseudogene Interval_107554 chr3 108462853 108463385 + 0 NA TTS (ENSMUSG00000040412.17) protein_coding-TTS (ENSMUSG00000040412.17) -11471 ENSMUSG00000106101.1 ENSMUSG00000106101 ENSMUST00000198133 Gm43438 processed_pseudogene Interval_163243 chr9 19186087 19186314 + 0 NA Intergenic Intergenic -8888 ENSMUSG00000110519.2 ENSMUSG00000110519 ENSMUST00000212127 Olfr839-ps1 protein_coding Interval_21469 chr10 128772863 128774154 + 0 NA Intergenic Intergenic 3742 ENSMUSG00000045055.5 ENSMUSG00000045055 ENSMUST00000059546 Rpsa-ps2 processed_pseudogene Interval_155175 chr8 27212345 27213292 + 0 NA intron (ENSMUSG00000039720.7, intron 1 of 1) protein_coding-intron (ENSMUSG00000039720.7, intron 1 of 1) 11010 ENSMUSG00000039720.7 ENSMUSG00000039720 ENSMUST00000209299 Got1l1 protein_coding Interval_111522 chr4 22402526 22402800 + 0 NA intron (ENSMUSG00000040410.14, intron 5 of 8) protein_coding-intron (ENSMUSG00000040410.14, intron 5 of 8) -5628 ENSMUSG00000103000.1 ENSMUSG00000103000 ENSMUST00000195510 Gm37900 TEC Interval_81455 chr18 60854415 60854812 + 0 NA Intergenic Intergenic -6167 ENSMUSG00000024613.16 ENSMUSG00000024613 ENSMUST00000177343 Tcof1 protein_coding Interval_4860 chr1 80331014 80331883 + 0 NA intron (ENSMUSG00000004364.14, intron 1 of 5) protein_coding-intron (ENSMUSG00000004364.14, intron 1 of 15) -3454 ENSMUSG00000103525.1 ENSMUSG00000103525 ENSMUST00000192816 Gm37262 TEC Interval_77766 chr18 3354084 3354408 + 0 NA intron (ENSMUSG00000097746.2, intron 1 of 1) processed_transcript-intron (ENSMUSG00000097746.2, intron 1 of 1) -16657 ENSMUSG00000063889.16 ENSMUSG00000063889 ENSMUST00000132334 Crem protein_coding Interval_109019 chr3 135193192 135194099 + 0 NA Intergenic Intergenic -15342 ENSMUSG00000106079.1 ENSMUSG00000106079 ENSMUST00000199682 Gm43033 processed_pseudogene Interval_41643 chr12 117315047 117315310 + 0 NA intron (ENSMUSG00000101930.1, intron 1 of 1) antisense-intron (ENSMUSG00000101930.1, intron 1 of 1) 21834 ENSMUSG00000101930.1 ENSMUSG00000101930 ENSMUST00000186454 Gm5441 antisense Interval_39718 chr12 95264314 95264537 + 0 NA Intergenic Intergenic -60482 ENSMUSG00000112262.1 ENSMUSG00000112262 ENSMUST00000218579 Gm48013 unprocessed_pseudogene Interval_162918 chr9 13083239 13084850 + 0 NA Intergenic Intergenic 21811 ENSMUSG00000111830.1 ENSMUSG00000111830 ENSMUST00000216694 4930568E12Rik lincRNA Interval_116176 chr4 108387096 108388146 + 0 NA Intergenic Intergenic -4272 ENSMUSG00000059816.5 ENSMUSG00000059816 ENSMUST00000053157 Shisal2a protein_coding Interval_126383 chr5 87719418 87719680 + 0 NA Intergenic Intergenic -13979 ENSMUSG00000094386.1 ENSMUSG00000094386 ENSMUST00000158145 Gm25066 snoRNA Interval_97216 chr2 132290556 132291238 + 0 NA intron (ENSMUSG00000058793.14, intron 1 of 12) protein_coding-intron (ENSMUSG00000058793.14, intron 1 of 12) 27656 ENSMUSG00000058793.14 ENSMUSG00000058793 ENSMUST00000138194 Cds2 protein_coding Interval_122451 chr5 22868714 22868915 + 0 NA promoter-TSS (ENSMUSG00000105543.1) TEC-promoter-TSS (ENSMUSG00000105543.1) -269 ENSMUSG00000105543.1 ENSMUSG00000105543 ENSMUST00000199544 Gm43169 TEC Interval_76198 chr17 76873920 76874137 + 0 NA Intergenic Intergenic -52538 ENSMUSG00000117498.1 ENSMUSG00000117498 ENSMUST00000234836 Gm18366 processed_pseudogene Interval_73806 chr17 43925466 43926179 + 0 NA intron (ENSMUSG00000039601.16, intron 2 of 4) protein_coding-intron (ENSMUSG00000039601.16, intron 2 of 4) 36019 ENSMUSG00000088576.1 ENSMUSG00000088576 ENSMUST00000157951 Gm24532 misc_RNA Interval_157348 chr8 69761486 69762491 + 0 NA exon (ENSMUSG00000043090.18, exon 6 of 6) protein_coding-exon (ENSMUSG00000043090.18, exon 6 of 6) -12018 ENSMUSG00000092260.7 ENSMUSG00000092260 ENSMUST00000154063 Zfp963 protein_coding Interval_147988 chr7 76392794 76393642 + 0 NA intron (ENSMUSG00000025754.11, intron 6 of 22) protein_coding-intron (ENSMUSG00000025754.11, intron 6 of 22) -147280 ENSMUSG00000098009.1 ENSMUSG00000098009 ENSMUST00000182353 Gm5597 processed_pseudogene Interval_159607 chr8 95775882 95776454 + 0 NA exon (ENSMUSG00000110556.1, exon 1 of 1) TEC-exon (ENSMUSG00000110556.1, exon 1 of 1) 2362 ENSMUSG00000110556.1 ENSMUSG00000110556 ENSMUST00000212863 Gm45762 TEC Interval_129860 chr5 122780979 122781257 + 0 NA exon (ENSMUSG00000105613.1, exon 1 of 1) TEC-exon (ENSMUSG00000105613.1, exon 1 of 1) 1593 ENSMUSG00000105613.1 ENSMUSG00000105613 ENSMUST00000199279 Gm43684 TEC Interval_147580 chr7 68523222 68523676 + 0 NA Intergenic Intergenic 75405 ENSMUSG00000109375.1 ENSMUSG00000109375 ENSMUST00000208980 Gm44887 processed_pseudogene Interval_17439 chr10 76732943 76733921 + 0 NA Intergenic Intergenic -3159 ENSMUSG00000112291.1 ENSMUSG00000112291 ENSMUST00000218963 Gm48276 lincRNA Interval_44942 chr13 50423620 50423845 + 0 NA promoter-TSS (ENSMUSG00000037816.10) protein_coding-promoter-TSS (ENSMUSG00000037816.10) -7389 ENSMUSG00000037816.10 ENSMUSG00000037816 ENSMUST00000176543 Fbxw17 protein_coding Interval_103532 chr3 47591793 47592424 + 0 NA Intergenic Intergenic -131770 ENSMUSG00000103798.1 ENSMUSG00000103798 ENSMUST00000193328 Gm2229 processed_pseudogene Interval_75128 chr17 63786319 63787832 + 0 NA Intergenic Intergenic -75987 ENSMUSG00000000127.15 ENSMUSG00000000127 ENSMUST00000038080 Fer protein_coding Interval_113609 chr4 56972031 56972507 + 0 NA exon (ENSMUSG00000045589.7, exon 3 of 5) protein_coding-exon (ENSMUSG00000045589.7, exon 3 of 5) 17867 ENSMUSG00000045589.7 ENSMUSG00000045589 ENSMUST00000128276 Frrs1l protein_coding Interval_51813 chr14 32387761 32388807 + 0 NA exon (ENSMUSG00000072473.4, exon 1 of 3) protein_coding-exon (ENSMUSG00000072473.4, exon 1 of 3) 107 ENSMUSG00000072473.4 ENSMUSG00000072473 ENSMUST00000100723 1700024G13Rik protein_coding Interval_146756 chr7 49956198 49956449 + 0 NA intron (ENSMUSG00000039728.15, intron 13 of 14) protein_coding-intron (ENSMUSG00000039728.15, intron 14 of 15) 46024 ENSMUSG00000039728.15 ENSMUSG00000039728 ENSMUST00000107605 Slc6a5 protein_coding Interval_105574 chr3 87851633 87852101 + 0 NA exon (ENSMUSG00000028071.12, exon 6 of 7) protein_coding-exon (ENSMUSG00000028071.12, exon 6 of 7) 4856 ENSMUSG00000028071.12 ENSMUSG00000028071 ENSMUST00000194639 Sh2d2a protein_coding Interval_11379 chr1 181385124 181385952 + 0 NA intron (ENSMUSG00000026514.14, intron 1 of 5) protein_coding-intron (ENSMUSG00000026514.14, intron 1 of 5) 4360 ENSMUSG00000102276.1 ENSMUSG00000102276 ENSMUST00000192780 2900069G24Rik TEC Interval_87602 chr19 53676292 53677765 + 0 NA promoter-TSS (ENSMUSG00000043639.15) protein_coding-promoter-TSS (ENSMUSG00000043639.15) -278 ENSMUSG00000043639.15 ENSMUSG00000043639 ENSMUST00000161856 Rbm20 protein_coding Interval_122212 chr5 19918778 19919054 + 0 NA intron (ENSMUSG00000040003.18, intron 1 of 21) protein_coding-intron (ENSMUSG00000040003.18, intron 2 of 22) -173699 ENSMUSG00000096882.1 ENSMUSG00000096882 ENSMUST00000083029 Gm23570 snRNA Interval_51976 chr14 34375910 34376194 + 0 NA intron (ENSMUSG00000041445.9, intron 1 of 4) protein_coding-intron (ENSMUSG00000041445.9, intron 1 of 6) 331 ENSMUSG00000041445.9 ENSMUSG00000041445 ENSMUST00000227130 Mmrn2 protein_coding Interval_42439 chr13 13557253 13557782 + 0 NA Intergenic Intergenic 42779 ENSMUSG00000114068.1 ENSMUSG00000114068 ENSMUST00000221249 Gm48783 TEC Interval_94739 chr2 93899410 93900460 + 0 NA Intergenic Intergenic 40943 ENSMUSG00000083009.1 ENSMUSG00000083009 ENSMUST00000121653 Gm1335 processed_pseudogene Interval_17886 chr10 80596014 80597210 + 0 NA Intergenic Intergenic -6280 ENSMUSG00000113949.1 ENSMUSG00000113949 ENSMUST00000221236 Scamp4 protein_coding Interval_168484 chr9 82247841 82248667 + 0 NA TTS (ENSMUSG00000077415.1) snoRNA-TTS (ENSMUSG00000077415.1) 406 ENSMUSG00000077415.1 ENSMUSG00000077415 ENSMUST00000104227 Gm23748 snoRNA Interval_105432 chr3 86268303 86268714 + 0 NA intron (ENSMUSG00000028080.16, intron 1 of 38) protein_coding-intron (ENSMUSG00000028080.16, intron 2 of 56) -4933 ENSMUSG00000103759.1 ENSMUSG00000103759 ENSMUST00000193963 Gm37288 processed_pseudogene Interval_109835 chr3 148817131 148818173 + 0 NA exon (ENSMUSG00000028184.12, exon 20 of 20) protein_coding-exon (ENSMUSG00000028184.12, exon 20 of 20) 164592 ENSMUSG00000105934.1 ENSMUSG00000105934 ENSMUST00000196420 Gm43575 processed_pseudogene Interval_35671 chr12 27293850 27294524 + 0 NA Intergenic Intergenic -27620 ENSMUSG00000114083.1 ENSMUSG00000114083 ENSMUST00000221503 Gm47860 transcribed_processed_pseudogene Interval_160556 chr8 110643134 110643335 + 0 NA intron (ENSMUSG00000010936.11, intron 9 of 18) protein_coding-intron (ENSMUSG00000010936.11, intron 9 of 18) -2346 ENSMUSG00000010936.11 ENSMUSG00000010936 ENSMUST00000213015 Vac14 protein_coding Interval_128257 chr5 112087050 112087354 + 0 NA Intergenic Intergenic -69035 ENSMUSG00000104538.1 ENSMUSG00000104538 ENSMUST00000197688 1700016B01Rik lincRNA Interval_40642 chr12 106259257 106259923 + 0 NA Intergenic Intergenic 38515 ENSMUSG00000077640.1 ENSMUSG00000077640 ENSMUST00000104452 Gm24986 snoRNA Interval_97900 chr2 145232170 145233154 + 0 NA intron (ENSMUSG00000063873.10, intron 1 of 4) protein_coding-intron (ENSMUSG00000063873.10, intron 1 of 16) 64743 ENSMUSG00000063873.10 ENSMUSG00000063873 ENSMUST00000131123 Slc24a3 protein_coding Interval_38155 chr12 76013395 76014012 + 0 NA intron (ENSMUSG00000063450.14, intron 65 of 114) protein_coding-intron (ENSMUSG00000063450.14, intron 65 of 115) 104600 ENSMUSG00000092922.1 ENSMUSG00000092922 ENSMUST00000175181 Mir5101 miRNA Interval_122628 chr5 24331596 24332132 + 0 NA exon (ENSMUSG00000038319.14, exon 4 of 15) protein_coding-exon (ENSMUSG00000038319.14, exon 4 of 15) -2059 ENSMUSG00000086729.1 ENSMUSG00000086729 ENSMUST00000144193 Gm15589 antisense Interval_159583 chr8 95611177 95611980 + 0 NA intron (ENSMUSG00000110447.1, intron 3 of 3) lincRNA-intron (ENSMUSG00000110447.1, intron 4 of 4) 10059 ENSMUSG00000110447.1 ENSMUSG00000110447 ENSMUST00000213069 Gm31518 lincRNA Interval_13266 chr10 13768521 13769334 + 0 NA intron (ENSMUSG00000019806.13, intron 3 of 5) protein_coding-intron (ENSMUSG00000019806.13, intron 3 of 5) 99902 ENSMUSG00000019806.13 ENSMUSG00000019806 ENSMUST00000162869 Aig1 protein_coding Interval_63348 chr15 100477739 100479493 + 0 NA TTS (ENSMUSG00000044636.6) protein_coding-TTS (ENSMUSG00000044636.6) 6209 ENSMUSG00000037353.9 ENSMUSG00000037353 ENSMUST00000229372 Letmd1 protein_coding Interval_51982 chr14 34408766 34409259 + 0 NA Intergenic Intergenic 33291 ENSMUSG00000041445.9 ENSMUSG00000041445 ENSMUST00000227130 Mmrn2 protein_coding Interval_153849 chr8 9810789 9811327 + 0 NA intron (ENSMUSG00000109183.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000109183.1, intron 1 of 1) 10864 ENSMUSG00000109183.1 ENSMUSG00000109183 ENSMUST00000209080 Gm44761 lincRNA Interval_78644 chr18 16216233 16217331 + 0 NA Intergenic Intergenic 4586 ENSMUSG00000084643.1 ENSMUSG00000084643 ENSMUST00000122694 Gm24385 misc_RNA Interval_25609 chr11 50188948 50189904 + 0 NA intron (ENSMUSG00000020381.10, intron 4 of 5) protein_coding-intron (ENSMUSG00000020381.10, intron 3 of 6) 14982 ENSMUSG00000020381.10 ENSMUSG00000020381 ENSMUST00000123164 Mrnip protein_coding Interval_49763 chr13 114792983 114794013 + 0 NA Intergenic Intergenic -24796 ENSMUSG00000015536.14 ENSMUSG00000015536 ENSMUST00000164871 Mocs2 protein_coding Interval_166363 chr9 58653708 58653900 + 0 NA TTS (ENSMUSG00000032336.17) protein_coding-TTS (ENSMUSG00000032336.17) 10465 ENSMUSG00000074269.10 ENSMUSG00000074269 ENSMUST00000186960 Rec114 protein_coding Interval_135956 chr6 49083474 49084878 + 0 NA TTS (ENSMUSG00000029815.12) protein_coding-TTS (ENSMUSG00000029815.12) -3114 ENSMUSG00000107990.1 ENSMUSG00000107990 ENSMUST00000204877 Gm7890 processed_pseudogene Interval_91268 chr2 37152489 37152714 + 0 NA Intergenic Intergenic 13274 ENSMUSG00000078198.2 ENSMUSG00000078198 ENSMUST00000104995 Olfr364-ps1 protein_coding Interval_23816 chr11 26526507 26527103 + 0 NA intron (ENSMUSG00000064090.14, intron 6 of 11) protein_coding-intron (ENSMUSG00000064090.14, intron 7 of 12) -66421 ENSMUSG00000068314.5 ENSMUSG00000068314 ENSMUST00000089614 Gm6899 TEC Interval_125392 chr5 66651747 66652260 + 0 NA intron (ENSMUSG00000087601.3, intron 1 of 4) antisense-intron (ENSMUSG00000087601.3, intron 1 of 4) 24030 ENSMUSG00000087601.3 ENSMUSG00000087601 ENSMUST00000177319 Uchl1os antisense Interval_30442 chr11 94385904 94386662 + 0 NA intron (ENSMUSG00000020865.16, intron 1 of 30) protein_coding-intron (ENSMUSG00000020865.16, intron 1 of 30) 6693 ENSMUSG00000020865.16 ENSMUSG00000020865 ENSMUST00000126566 Abcc3 protein_coding Interval_89728 chr2 25025053 25025378 + 0 NA intron (ENSMUSG00000036833.16, intron 20 of 21) protein_coding-intron (ENSMUSG00000036833.16, intron 20 of 34) 6238 ENSMUSG00000089513.1 ENSMUSG00000089513 ENSMUST00000158888 Gm24875 snRNA Interval_70170 chr17 5940125 5941917 + 0 NA promoter-TSS (ENSMUSG00000023805.17) protein_coding-promoter-TSS (ENSMUSG00000023805.17) 1934 ENSMUSG00000116734.1 ENSMUSG00000116734 ENSMUST00000231634 Gm8376 processed_pseudogene Interval_122743 chr5 25008636 25011546 + 0 NA intron (ENSMUSG00000028944.14, intron 3 of 15) protein_coding-intron (ENSMUSG00000028944.14, intron 3 of 15) 24249 ENSMUSG00000059631.6 ENSMUSG00000059631 ENSMUST00000075081 1500035N22Rik lincRNA Interval_107540 chr3 108383462 108384958 + 0 NA promoter-TSS (ENSMUSG00000074281.3) processed_transcript-promoter-TSS (ENSMUSG00000074281.3) -469 ENSMUSG00000074281.3 ENSMUSG00000074281 ENSMUST00000142833 Gm12522 processed_transcript Interval_37708 chr12 71294098 71294741 + 0 NA Intergenic Intergenic -15565 ENSMUSG00000044548.11 ENSMUSG00000044548 ENSMUST00000150639 Dact1 protein_coding Interval_48658 chr13 100892151 100892548 + 0 NA intron (ENSMUSG00000100596.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000100596.1, intron 1 of 2) 17540 ENSMUSG00000114738.1 ENSMUSG00000114738 ENSMUST00000225803 Gm41041 processed_pseudogene Interval_123945 chr5 36788186 36788421 + 0 NA Intergenic Intergenic 8469 ENSMUSG00000055302.5 ENSMUSG00000055302 ENSMUST00000068795 Mrfap1 protein_coding Interval_28505 chr11 76385717 76386488 + 0 NA intron (ENSMUSG00000020844.6, intron 1 of 1) protein_coding-intron (ENSMUSG00000020844.6, intron 1 of 7) 12966 ENSMUSG00000020844.6 ENSMUSG00000020844 ENSMUST00000131472 Nxn protein_coding Interval_63196 chr15 99677077 99679310 + 0 NA intron (ENSMUSG00000023017.10, intron 1 of 2) protein_coding-intron (ENSMUSG00000023017.10, intron 3 of 11) -16851 ENSMUSG00000023017.10 ENSMUSG00000023017 ENSMUST00000227670 Asic1 protein_coding Interval_87348 chr19 47871612 47872222 + 0 NA intron (ENSMUSG00000025069.15, intron 4 of 7) protein_coding-intron (ENSMUSG00000044948.17, intron 1 of 13) 6091 ENSMUSG00000025069.15 ENSMUSG00000025069 ENSMUST00000135016 Gsto2 protein_coding Interval_47095 chr13 75696324 75697127 + 0 NA Intergenic Intergenic 4753 ENSMUSG00000077337.1 ENSMUSG00000077337 ENSMUST00000104149 Gm23012 snoRNA Interval_31078 chr11 98021735 98023178 + 0 NA promoter-TSS (ENSMUSG00000086716.1) processed_transcript-promoter-TSS (ENSMUSG00000086716.1) -499 ENSMUSG00000086716.1 ENSMUSG00000086716 ENSMUST00000123784 Gm11629 processed_transcript Interval_93545 chr2 73970859 73971418 + 0 NA Intergenic Intergenic -10469 ENSMUSG00000083072.2 ENSMUSG00000083072 ENSMUST00000119237 Gm13668 processed_pseudogene Interval_170448 chr9 108045039 108045279 + 0 NA TTS (ENSMUSG00000032594.11) protein_coding-TTS (ENSMUSG00000032594.11) -4110 ENSMUSG00000070284.10 ENSMUSG00000070284 ENSMUST00000145330 Gmppb protein_coding Interval_166963 chr9 64178612 64179919 + 0 NA promoter-TSS (ENSMUSG00000032398.7) protein_coding-promoter-TSS (ENSMUSG00000032398.7) -9 ENSMUSG00000032398.7 ENSMUSG00000032398 ENSMUST00000034965 Snapc5 protein_coding Interval_98104 chr2 148079634 148080182 + 0 NA Intergenic Intergenic -8069 ENSMUSG00000083750.1 ENSMUSG00000083750 ENSMUST00000122234 Gm14108 processed_pseudogene Interval_38511 chr12 79758890 79759510 + 0 NA intron (ENSMUSG00000059060.15, intron 8 of 10) protein_coding-intron (ENSMUSG00000059060.15, intron 8 of 10) 166294 ENSMUSG00000112765.1 ENSMUSG00000112765 ENSMUST00000219857 9430078K24Rik lincRNA Interval_101814 chr3 9686858 9687172 + 0 NA TTS (ENSMUSG00000027508.15) protein_coding-TTS (ENSMUSG00000027508.15) 30495 ENSMUSG00000103876.1 ENSMUSG00000103876 ENSMUST00000195844 Gm17806 processed_pseudogene Interval_94707 chr2 93579343 93579693 + 0 NA Intergenic Intergenic -62870 ENSMUSG00000040310.12 ENSMUSG00000040310 ENSMUST00000111254 Alx4 protein_coding Interval_12821 chr10 5839924 5842460 + 0 NA intron (ENSMUSG00000019775.17, intron 4 of 4) protein_coding-intron (ENSMUSG00000019775.17, intron 6 of 6) -25437 ENSMUSG00000019774.8 ENSMUSG00000019774 ENSMUST00000145687 Mtrf1l protein_coding Interval_33526 chr11 117043483 117044077 + 0 NA Intergenic Intergenic -3592 ENSMUSG00000086902.7 ENSMUSG00000086902 ENSMUST00000152401 Gm11728 lincRNA Interval_169678 chr9 100311848 100312806 + 0 NA Intergenic Intergenic 11197 ENSMUSG00000101042.1 ENSMUSG00000101042 ENSMUST00000187644 Gm28167 lincRNA Interval_99240 chr2 158330882 158331255 + 0 NA intron (ENSMUSG00000016024.9, intron 14 of 14) protein_coding-intron (ENSMUSG00000016024.9, intron 14 of 14) 24575 ENSMUSG00000016024.9 ENSMUSG00000016024 ENSMUST00000129811 Lbp protein_coding Interval_166998 chr9 64393872 64394997 + 0 NA intron (ENSMUSG00000036466.17, intron 1 of 24) protein_coding-intron (ENSMUSG00000036466.17, intron 1 of 24) 8808 ENSMUSG00000036466.17 ENSMUSG00000036466 ENSMUST00000153934 Megf11 protein_coding Interval_146569 chr7 46897449 46897656 + 0 NA intron (ENSMUSG00000014402.15, intron 2 of 4) protein_coding-intron (ENSMUSG00000014402.15, intron 7 of 9) 16858 ENSMUSG00000014402.15 ENSMUSG00000014402 ENSMUST00000143413 Tsg101 protein_coding Interval_171815 chr9 121421924 121422160 + 0 NA intron (ENSMUSG00000032536.12, intron 1 of 12) protein_coding-intron (ENSMUSG00000032536.12, intron 2 of 15) 72468 ENSMUSG00000032532.7 ENSMUSG00000032532 ENSMUST00000217581 Cck protein_coding Interval_73582 chr17 40790639 40791040 + 0 NA exon (ENSMUSG00000023930.14, exon 4 of 11) protein_coding-exon (ENSMUSG00000023930.14, exon 4 of 11) 3263 ENSMUSG00000023930.14 ENSMUSG00000023930 ENSMUST00000124399 Crisp2 protein_coding Interval_104243 chr3 61795537 61797385 + 0 NA Intergenic Intergenic 273333 ENSMUSG00000104489.1 ENSMUSG00000104489 ENSMUST00000193786 Gm9700 processed_pseudogene Interval_123226 chr5 30758941 30759575 + 0 NA exon (ENSMUSG00000106173.1, exon 1 of 2) sense_intronic-exon (ENSMUSG00000106173.1, exon 1 of 2) 226 ENSMUSG00000106173.1 ENSMUSG00000106173 ENSMUST00000197835 Gm42764 sense_intronic Interval_140576 chr6 119711675 119712570 + 0 NA intron (ENSMUSG00000030172.15, intron 15 of 20) protein_coding-intron (ENSMUSG00000030172.15, intron 14 of 18) -90017 ENSMUSG00000030172.15 ENSMUSG00000030172 ENSMUST00000183741 Erc1 protein_coding Interval_125379 chr5 66559683 66560701 + 0 NA intron (ENSMUSG00000029207.16, intron 1 of 5) protein_coding-intron (ENSMUSG00000029207.16, intron 1 of 17) -26031 ENSMUSG00000106720.1 ENSMUSG00000106720 ENSMUST00000202051 Gm43795 TEC Interval_72562 chr17 30685613 30685901 + 0 NA intron (ENSMUSG00000033826.10, intron 18 of 90) protein_coding-intron (ENSMUSG00000033826.10, intron 20 of 92) 15117 ENSMUSG00000033826.10 ENSMUSG00000033826 ENSMUST00000235567 Dnah8 protein_coding Interval_167445 chr9 69397597 69399099 + 0 NA promoter-TSS (ENSMUSG00000032235.15) protein_coding-promoter-TSS (ENSMUSG00000032235.15) -300 ENSMUSG00000032235.15 ENSMUSG00000032235 ENSMUST00000147558 Ice2 protein_coding Interval_166076 chr9 56437237 56438057 + 0 NA exon (ENSMUSG00000118653.1, exon 1 of 1) protein_coding-exon (ENSMUSG00000118653.1, exon 1 of 1) 190 ENSMUSG00000118653.1 ENSMUSG00000118653 ENSMUST00000239472 AC159819.1 protein_coding Interval_173386 chrX 86191195 86194206 + 0 NA exon (ENSMUSG00000025056.4, exon 1 of 2) protein_coding-exon (ENSMUSG00000025056.4, exon 1 of 2) 936 ENSMUSG00000025056.4 ENSMUSG00000025056 ENSMUST00000026036 Nr0b1 protein_coding Interval_51704 chr14 31518629 31520633 + 0 NA Intergenic Intergenic 8283 ENSMUSG00000115102.1 ENSMUSG00000115102 ENSMUST00000226995 Gm49270 TEC Interval_75507 chr17 67618972 67619257 + 0 NA intron (ENSMUSG00000117029.1, intron 2 of 2) lincRNA-intron (ENSMUSG00000117029.1, intron 2 of 2) 10218 ENSMUSG00000117029.1 ENSMUSG00000117029 ENSMUST00000233130 Gm36201 lincRNA Interval_167096 chr9 65220603 65220973 + 0 NA intron (ENSMUSG00000032392.11, intron 2 of 6) protein_coding-intron (ENSMUSG00000032392.11, intron 2 of 6) -18947 ENSMUSG00000095892.1 ENSMUSG00000095892 ENSMUST00000093721 Rnu5g snRNA Interval_104092 chr3 58539636 58539830 + 0 NA intron (ENSMUSG00000027810.14, intron 4 of 8) protein_coding-intron (ENSMUSG00000027810.14, intron 4 of 13) 12803 ENSMUSG00000106553.1 ENSMUSG00000106553 ENSMUST00000199552 6720482G16Rik TEC Interval_120770 chr4 150556766 150556965 + 0 NA intron (ENSMUSG00000039852.17, intron 11 of 22) protein_coding-intron (ENSMUSG00000039852.17, intron 5 of 16) 11679 ENSMUSG00000085213.1 ENSMUSG00000085213 ENSMUST00000128800 Gm13091 antisense Interval_38792 chr12 82370046 82370404 + 0 NA intron (ENSMUSG00000042700.16, intron 5 of 21) protein_coding-intron (ENSMUSG00000042700.16, intron 4 of 20) 126312 ENSMUSG00000094374.2 ENSMUSG00000094374 ENSMUST00000179295 Gm5435 processed_pseudogene Interval_68891 chr16 87902004 87902274 + 0 NA intron (ENSMUSG00000022935.16, intron 16 of 17) protein_coding-intron (ENSMUSG00000022935.16, intron 15 of 15) 114567 ENSMUSG00000055972.5 ENSMUSG00000055972 ENSMUST00000189929 2810407A14Rik lincRNA Interval_9030 chr1 153185312 153187395 + 0 NA promoter-TSS (ENSMUSG00000026479.13) protein_coding-promoter-TSS (ENSMUSG00000026479.13) 52973 ENSMUSG00000026478.14 ENSMUSG00000026478 ENSMUST00000159251 Lamc1 protein_coding Interval_87701 chr19 55206278 55208371 + 0 NA intron (ENSMUSG00000055523.7, intron 16 of 20) protein_coding-intron (ENSMUSG00000055523.7, intron 16 of 20) 14646 ENSMUSG00000098289.1 ENSMUSG00000098289 ENSMUST00000184990 Mir6715 miRNA Interval_70991 chr17 17032023 17032708 + 0 NA Intergenic Intergenic -31748 ENSMUSG00000096696.1 ENSMUSG00000096696 ENSMUST00000127027 Zfp960 protein_coding Interval_170153 chr9 105629262 105630005 + 0 NA Intergenic Intergenic 43918 ENSMUSG00000084659.1 ENSMUSG00000084659 ENSMUST00000122710 Gm22720 snRNA Interval_52007 chr14 34573475 34574462 + 0 NA intron (ENSMUSG00000021798.14, intron 3 of 13) protein_coding-intron (ENSMUSG00000021798.14, intron 5 of 13) 14513 ENSMUSG00000021798.14 ENSMUSG00000021798 ENSMUST00000226226 Ldb3 protein_coding Interval_33928 chr11 119490776 119491884 + 0 NA promoter-TSS (ENSMUSG00000039850.16) protein_coding-promoter-TSS (ENSMUSG00000039850.16) -141 ENSMUSG00000109408.1 ENSMUSG00000109408 ENSMUST00000208034 A930037H05Rik processed_transcript Interval_147149 chr7 63877561 63878283 + 0 NA Intergenic Intergenic -20052 ENSMUSG00000098708.7 ENSMUSG00000098708 ENSMUST00000184360 Gm27252 processed_transcript Interval_86541 chr19 41589187 41589512 + 0 NA TTS (ENSMUSG00000098286.1) miRNA-TTS (ENSMUSG00000098286.1) 698 ENSMUSG00000098286.1 ENSMUSG00000098286 ENSMUST00000183602 Mir8091 miRNA Interval_78628 chr18 15822162 15822759 + 0 NA Intergenic Intergenic -10334 ENSMUSG00000058064.6 ENSMUSG00000058064 ENSMUST00000079733 Gm10036 processed_pseudogene Interval_122094 chr5 16903508 16903961 + 0 NA Intergenic Intergenic 67820 ENSMUSG00000099854.1 ENSMUSG00000099854 ENSMUST00000186866 Gm28710 lincRNA Interval_122893 chr5 27000827 27001518 + 0 NA intron (ENSMUSG00000061576.15, intron 1 of 25) protein_coding-intron (ENSMUSG00000061576.15, intron 1 of 25) 6449 ENSMUSG00000081970.1 ENSMUSG00000081970 ENSMUST00000120811 Gm16057 processed_pseudogene Interval_101252 chr2 179872718 179873677 + 0 NA intron (ENSMUSG00000000305.12, intron 7 of 15) protein_coding-intron (ENSMUSG00000000305.12, intron 7 of 15) 96034 ENSMUSG00000000305.12 ENSMUSG00000000305 ENSMUST00000098996 Cdh4 protein_coding Interval_48421 chr13 98912686 98913356 + 0 NA intron (ENSMUSG00000009470.17, intron 1 of 6) protein_coding-intron (ENSMUSG00000009470.17, intron 1 of 23) 8797 ENSMUSG00000062461.7 ENSMUSG00000062461 ENSMUST00000080866 Rpl27a-ps4 processed_pseudogene Interval_153367 chr7 144066612 144067084 + 0 NA intron (ENSMUSG00000037541.22, intron 4 of 17) protein_coding-intron (ENSMUSG00000037541.22, intron 5 of 22) 44237 ENSMUSG00000109500.1 ENSMUSG00000109500 ENSMUST00000207456 Gm44999 TEC Interval_20518 chr10 118196018 118196362 + 0 NA Intergenic Intergenic -8752 ENSMUSG00000074695.3 ENSMUSG00000074695 ENSMUST00000096691 Il22 protein_coding Interval_76267 chr17 78611144 78611458 + 0 NA intron (ENSMUSG00000024076.10, intron 9 of 12) protein_coding-intron (ENSMUSG00000024076.10, intron 10 of 13) 37373 ENSMUSG00000024076.10 ENSMUSG00000024076 ENSMUST00000232864 Vit protein_coding Interval_153611 chr8 3718201 3719165 + 0 NA promoter-TSS (ENSMUSG00000074491.9) protein_coding-promoter-TSS (ENSMUSG00000074491.9) -1130 ENSMUSG00000074491.9 ENSMUSG00000074491 ENSMUST00000159612 Clec4g protein_coding Interval_145601 chr7 35854489 35855341 + 0 NA Intergenic Intergenic 16655 ENSMUSG00000100387.1 ENSMUSG00000100387 ENSMUST00000187488 Gm28514 lincRNA Interval_169976 chr9 103372376 103373064 + 0 NA Intergenic Intergenic -7741 ENSMUSG00000032803.15 ENSMUSG00000032803 ENSMUST00000190127 Cdv3 protein_coding Interval_155414 chr8 33406631 33407083 + 0 NA intron (ENSMUSG00000049184.6, intron 1 of 1) protein_coding-intron (ENSMUSG00000049184.6, intron 1 of 1) 20532 ENSMUSG00000049184.6 ENSMUSG00000049184 ENSMUST00000078058 Purg protein_coding Interval_71010 chr17 17189111 17190062 + 0 NA Intergenic Intergenic 68171 ENSMUSG00000095990.1 ENSMUSG00000095990 ENSMUST00000147630 Zfp97 protein_coding Interval_85148 chr19 23172115 23172443 + 0 NA Intergenic Intergenic 22848 ENSMUSG00000080626.1 ENSMUSG00000080626 ENSMUST00000116976 Mir1192 miRNA Interval_150891 chr7 116204524 116204951 + 0 NA intron (ENSMUSG00000045659.18, intron 3 of 18) protein_coding-intron (ENSMUSG00000045659.18, intron 3 of 26) -75212 ENSMUSG00000045659.18 ENSMUSG00000045659 ENSMUST00000205446 Plekha7 protein_coding Interval_111419 chr4 21436841 21437053 + 0 NA Intergenic Intergenic 108427 ENSMUSG00000089322.1 ENSMUSG00000089322 ENSMUST00000158697 Gm25977 snoRNA Interval_92315 chr2 58625029 58627018 + 0 NA intron (ENSMUSG00000026839.17, intron 1 of 7) protein_coding-intron (ENSMUSG00000026839.17, intron 1 of 7) -7058 ENSMUSG00000026839.17 ENSMUSG00000026839 ENSMUST00000128864 Upp2 protein_coding Interval_18277 chr10 84523102 84523947 + 0 NA TTS (ENSMUSG00000111514.1) lincRNA-TTS (ENSMUSG00000111514.1) 5479 ENSMUSG00000111514.1 ENSMUSG00000111514 ENSMUST00000215920 E230014E18Rik lincRNA Interval_18376 chr10 85399262 85399576 + 0 NA intron (ENSMUSG00000020042.15, intron 1 of 16) protein_coding-intron (ENSMUSG00000020042.15, intron 1 of 9) 65518 ENSMUSG00000087895.1 ENSMUSG00000087895 ENSMUST00000157270 Gm25281 miRNA Interval_145668 chr7 37122492 37122702 + 0 NA intron (ENSMUSG00000101342.1, intron 2 of 2) lincRNA-intron (ENSMUSG00000101342.1, intron 2 of 2) 6095 ENSMUSG00000101342.1 ENSMUSG00000101342 ENSMUST00000190381 Gm28078 lincRNA Interval_169603 chr9 99397794 99398677 + 0 NA intron (ENSMUSG00000032470.17, intron 2 of 3) protein_coding-intron (ENSMUSG00000032470.17, intron 2 of 5) -3540 ENSMUSG00000032470.17 ENSMUSG00000032470 ENSMUST00000123771 Mras protein_coding Interval_51273 chr14 25666784 25667608 + 0 NA TTS (ENSMUSG00000007817.15) protein_coding-TTS (ENSMUSG00000007817.15) -26998 ENSMUSG00000021868.7 ENSMUSG00000021868 ENSMUST00000223872 Ppif protein_coding Interval_145627 chr7 36333897 36334918 + 0 NA Intergenic Intergenic 31892 ENSMUSG00000093359.1 ENSMUSG00000093359 ENSMUST00000175618 Gm23292 miRNA Interval_97467 chr2 136869602 136871373 + 0 NA Intergenic Intergenic 15192 ENSMUSG00000116563.1 ENSMUSG00000116563 ENSMUST00000231720 AL731706.2 protein_coding Interval_161681 chr8 121977826 121978397 + 0 NA promoter-TSS (ENSMUSG00000025316.16) protein_coding-promoter-TSS (ENSMUSG00000025316.16) 87 ENSMUSG00000099140.1 ENSMUSG00000099140 ENSMUST00000184699 Mir7237 miRNA Interval_52671 chr14 48465881 48466212 + 0 NA intron (ENSMUSG00000036339.18, intron 4 of 16) protein_coding-intron (ENSMUSG00000036339.18, intron 3 of 15) -6276 ENSMUSG00000036339.18 ENSMUSG00000036339 ENSMUST00000226344 Tmem260 protein_coding Interval_102392 chr3 23351655 23351884 + 0 NA Intergenic Intergenic 23548 ENSMUSG00000102214.1 ENSMUSG00000102214 ENSMUST00000191948 Gm37492 processed_pseudogene Interval_4100 chr1 68234911 68235080 + 0 NA intron (ENSMUSG00000062209.15, intron 19 of 26) protein_coding-intron (ENSMUSG00000062209.15, intron 19 of 27) 58731 ENSMUSG00000083795.1 ENSMUSG00000083795 ENSMUST00000117740 Gm15670 processed_pseudogene Interval_149010 chr7 91735562 91736693 + 0 NA intron (ENSMUSG00000052572.19, intron 2 of 3) protein_coding-intron (ENSMUSG00000052572.19, intron 3 of 22) 46658 ENSMUSG00000109037.1 ENSMUSG00000109037 ENSMUST00000207840 C030038I04Rik TEC Interval_31277 chr11 99292960 99293715 + 0 NA Intergenic Intergenic -8075 ENSMUSG00000020913.3 ENSMUSG00000020913 ENSMUST00000017255 Krt24 protein_coding Interval_168256 chr9 78213845 78214192 + 0 NA exon (ENSMUSG00000111015.1, exon 1 of 1) processed_pseudogene-exon (ENSMUSG00000111015.1, exon 1 of 1) 827 ENSMUSG00000111015.1 ENSMUSG00000111015 ENSMUST00000216513 Gm3126 processed_pseudogene Interval_62160 chr15 88391848 88392061 + 0 NA Intergenic Intergenic -76322 ENSMUSG00000115880.1 ENSMUSG00000115880 ENSMUST00000230151 4930445N06Rik lincRNA Interval_121088 chr4 152806579 152806836 + 0 NA Intergenic Intergenic 109167 ENSMUSG00000073699.3 ENSMUSG00000073699 ENSMUST00000143133 Gm833 lincRNA Interval_121171 chr4 153763507 153763994 + 0 NA Intergenic Intergenic -112634 ENSMUSG00000077519.1 ENSMUSG00000077519 ENSMUST00000104331 Gm25880 snoRNA Interval_120201 chr4 144238767 144239365 + 0 NA Intergenic Intergenic -8711 ENSMUSG00000083708.1 ENSMUSG00000083708 ENSMUST00000122173 Gm13123 processed_pseudogene Interval_106905 chr3 101748080 101749431 + 0 NA exon (ENSMUSG00000105642.1, exon 1 of 1) lincRNA-exon (ENSMUSG00000105642.1, exon 1 of 1) 631 ENSMUSG00000105642.1 ENSMUSG00000105642 ENSMUST00000199434 Gm43134 lincRNA Interval_79705 chr18 34630829 34631000 + 0 NA TTS (ENSMUSG00000024370.17) protein_coding-TTS (ENSMUSG00000024370.17) 5907 ENSMUSG00000003779.16 ENSMUSG00000003779 ENSMUST00000236114 Kif20a protein_coding Interval_103289 chr3 38171849 38172063 + 0 NA Intergenic Intergenic 36163 ENSMUSG00000106002.1 ENSMUSG00000106002 ENSMUST00000197658 5430434I15Rik lincRNA Interval_48518 chr13 99676115 99676614 + 0 NA Intergenic Intergenic 16165 ENSMUSG00000077673.1 ENSMUSG00000077673 ENSMUST00000104485 Gm24471 snoRNA Interval_79431 chr18 31860430 31860839 + 0 NA intron (ENSMUSG00000024400.16, intron 7 of 21) protein_coding-intron (ENSMUSG00000024400.16, intron 7 of 21) -40115 ENSMUSG00000091561.3 ENSMUSG00000091561 ENSMUST00000165131 Gm6665 processed_pseudogene Interval_107671 chr3 109977205 109978001 + 0 NA intron (ENSMUSG00000059857.15, intron 1 of 4) protein_coding-intron (ENSMUSG00000059857.15, intron 1 of 6) 70219 ENSMUSG00000082624.1 ENSMUSG00000082624 ENSMUST00000121025 Gm12535 processed_pseudogene Interval_140058 chr6 113696117 113698057 + 0 NA promoter-TSS (ENSMUSG00000056952.13) protein_coding-promoter-TSS (ENSMUSG00000056952.13) -477 ENSMUSG00000056952.13 ENSMUSG00000056952 ENSMUST00000138420 Tatdn2 protein_coding Interval_98965 chr2 156384304 156384564 + 0 NA Intergenic Intergenic -1673 ENSMUSG00000088637.1 ENSMUSG00000088637 ENSMUST00000158012 Gm22316 misc_RNA Interval_105369 chr3 85595802 85596019 + 0 NA intron (ENSMUSG00000028085.12, intron 2 of 12) protein_coding-intron (ENSMUSG00000028085.12, intron 2 of 12) 21778 ENSMUSG00000028085.12 ENSMUSG00000028085 ENSMUST00000029726 Gatb protein_coding Interval_102186 chr3 19279340 19279788 + 0 NA intron (ENSMUSG00000069094.12, intron 1 of 8) protein_coding-intron (ENSMUSG00000069094.12, intron 1 of 12) 31488 ENSMUSG00000069094.12 ENSMUSG00000069094 ENSMUST00000143120 Pde7a protein_coding Interval_9425 chr1 156997591 156998332 + 0 NA intron (ENSMUSG00000101768.1, intron 2 of 2) lincRNA-intron (ENSMUSG00000101768.1, intron 2 of 2) -45586 ENSMUSG00000103325.1 ENSMUSG00000103325 ENSMUST00000193527 Gm10531 TEC Interval_60229 chr15 68439849 68440114 + 0 NA Intergenic Intergenic -76805 ENSMUSG00000093387.1 ENSMUSG00000093387 ENSMUST00000175699 Gm20732 lincRNA Interval_25827 chr11 51989686 51989916 + 0 NA intron (ENSMUSG00000020390.12, intron 5 of 6) protein_coding-intron (ENSMUSG00000020390.12, intron 4 of 5) 10961 ENSMUSG00000020390.12 ENSMUSG00000020390 ENSMUST00000147833 Ube2b protein_coding Interval_101912 chr3 11093082 11093304 + 0 NA Intergenic Intergenic -48835 ENSMUSG00000081537.2 ENSMUSG00000081537 ENSMUST00000118935 Gm37832 processed_pseudogene Interval_92845 chr2 66383317 66383850 + 0 NA intron (ENSMUSG00000064329.13, intron 1 of 10) protein_coding-intron (ENSMUSG00000064329.13, intron 1 of 26) -25911 ENSMUSG00000085386.1 ENSMUSG00000085386 ENSMUST00000127849 Gm13630 processed_transcript Interval_52267 chr14 41162437 41163312 + 0 NA Intergenic Intergenic 11416 ENSMUSG00000037780.3 ENSMUSG00000037780 ENSMUST00000047095 Mbl1 protein_coding Interval_66318 chr16 33121451 33122109 + 0 NA intron (ENSMUSG00000022802.2, intron 1 of 1) protein_coding-intron (ENSMUSG00000022802.2, intron 16 of 16) -2448 ENSMUSG00000022802.2 ENSMUSG00000022802 ENSMUST00000155920 Lmln protein_coding Interval_29641 chr11 85751387 85751576 + 0 NA intron (ENSMUSG00000059439.15, intron 1 of 4) protein_coding-intron (ENSMUSG00000059439.15, intron 23 of 24) 9221 ENSMUSG00000093278.1 ENSMUSG00000093278 ENSMUST00000175537 Mir5110 miRNA Interval_164138 chr9 31940074 31941122 + 0 NA Intergenic Intergenic -3798 ENSMUSG00000091639.2 ENSMUSG00000091639 ENSMUST00000169182 Gm3756 processed_pseudogene Interval_7458 chr1 131511025 131511386 + 0 NA intron (ENSMUSG00000026425.15, intron 2 of 4) protein_coding-intron (ENSMUSG00000026425.15, intron 2 of 22) -12403 ENSMUSG00000076287.1 ENSMUSG00000076287 ENSMUST00000102332 Gm24273 miRNA Interval_119864 chr4 140572799 140574242 + 0 NA intron (ENSMUSG00000040964.16, intron 2 of 15) protein_coding-intron (ENSMUSG00000040964.16, intron 15 of 27) 43545 ENSMUSG00000040964.16 ENSMUSG00000040964 ENSMUST00000154979 Arhgef10l protein_coding Interval_9271 chr1 155717294 155718168 + 0 NA intron (ENSMUSG00000026468.14, intron 2 of 4) protein_coding-intron (ENSMUSG00000026468.14, intron 2 of 5) 33953 ENSMUSG00000026468.14 ENSMUSG00000026468 ENSMUST00000195275 Lhx4 protein_coding Interval_123926 chr5 36592483 36593468 + 0 NA intron (ENSMUSG00000029192.17, intron 1 of 3) protein_coding-intron (ENSMUSG00000029192.17, intron 1 of 3) 20764 ENSMUSG00000106797.1 ENSMUSG00000106797 ENSMUST00000174019 Gm42936 processed_transcript Interval_63289 chr15 100113366 100114147 + 0 NA intron (ENSMUSG00000023026.16, intron 1 of 37) protein_coding-intron (ENSMUSG00000023026.16, intron 1 of 37) -5595 ENSMUSG00000116311.1 ENSMUSG00000116311 ENSMUST00000229204 4930478M13Rik antisense Interval_4056 chr1 66960245 66961275 + 0 NA Intergenic Intergenic 8931 ENSMUSG00000082212.1 ENSMUSG00000082212 ENSMUST00000121328 Gm15826 processed_pseudogene Interval_19081 chr10 94311546 94312568 + 0 NA promoter-TSS (ENSMUSG00000020023.18) protein_coding-promoter-TSS (ENSMUSG00000020023.18) -13354 ENSMUSG00000053420.6 ENSMUSG00000053420 ENSMUST00000065826 Gm4792 protein_coding Interval_137886 chr6 83145845 83146497 + 0 NA intron (ENSMUSG00000034930.16, intron 2 of 6) protein_coding-intron (ENSMUSG00000034930.16, intron 2 of 11) -5139 ENSMUSG00000034930.16 ENSMUSG00000034930 ENSMUST00000213056 Rtkn protein_coding Interval_109548 chr3 144367169 144368350 + 0 NA Intergenic Intergenic 47545 ENSMUSG00000106266.1 ENSMUSG00000106266 ENSMUST00000198471 Gm43447 lincRNA Interval_55390 chr14 86444184 86444800 + 0 NA Intergenic Intergenic -35393 ENSMUSG00000115664.1 ENSMUSG00000115664 ENSMUST00000226187 Gm32913 lincRNA Interval_122602 chr5 24124101 24124671 + 0 NA intron (ENSMUSG00000028986.12, intron 1 of 11) protein_coding-intron (ENSMUSG00000028986.12, intron 1 of 10) -5722 ENSMUSG00000106133.1 ENSMUSG00000106133 ENSMUST00000197957 Gm3724 processed_pseudogene Interval_152074 chr7 128786601 128787204 + 0 NA Intergenic Intergenic -8292 ENSMUSG00000108600.1 ENSMUSG00000108600 ENSMUST00000205528 Gm32884 lincRNA Interval_152539 chr7 134014247 134015040 + 0 NA intron (ENSMUSG00000054555.11, intron 3 of 6) protein_coding-intron (ENSMUSG00000054555.11, intron 3 of 22) -74902 ENSMUSG00000093032.1 ENSMUSG00000093032 ENSMUST00000175291 Gm23631 miRNA Interval_127074 chr5 100091373 100092317 + 0 NA promoter-TSS (ENSMUSG00000086259.7) antisense-promoter-TSS (ENSMUSG00000086259.7) -52 ENSMUSG00000086259.7 ENSMUSG00000086259 ENSMUST00000154539 Tmem150cos antisense Interval_37287 chr12 64822546 64822955 + 0 NA Intergenic Intergenic 5935 ENSMUSG00000114029.1 ENSMUSG00000114029 ENSMUST00000222704 Gm4806 processed_pseudogene Interval_94658 chr2 93075940 93076772 + 0 NA Intergenic Intergenic 21888 ENSMUSG00000087559.1 ENSMUSG00000087559 ENSMUST00000150159 Gm13802 lincRNA Interval_137334 chr6 71430042 71431228 + 0 NA intron (ENSMUSG00000002222.14, intron 1 of 8) protein_coding-intron (ENSMUSG00000002222.14, intron 1 of 8) 4472 ENSMUSG00000108211.1 ENSMUSG00000108211 ENSMUST00000205157 Gm44130 TEC Interval_28738 chr11 78004392 78004603 + 0 NA intron (ENSMUSG00000037791.15, intron 2 of 10) protein_coding-intron (ENSMUSG00000037791.15, intron 2 of 14) -19132 ENSMUSG00000037791.15 ENSMUSG00000037791 ENSMUST00000125079 Phf12 protein_coding Interval_18519 chr10 86860281 86861009 + 0 NA intron (ENSMUSG00000035459.18, intron 16 of 27) protein_coding-intron (ENSMUSG00000035459.18, intron 56 of 68) 21551 ENSMUSG00000089959.1 ENSMUSG00000089959 ENSMUST00000159445 Gm16268 antisense Interval_61222 chr15 80078379 80078588 + 0 NA TTS (ENSMUSG00000077734.1) snoRNA-TTS (ENSMUSG00000077734.1) 108 ENSMUSG00000077734.1 ENSMUSG00000077734 ENSMUST00000104546 Snord83b snoRNA Interval_13676 chr10 20944566 20944887 + 0 NA Intergenic Intergenic -65753 ENSMUSG00000111177.1 ENSMUSG00000111177 ENSMUST00000213102 Rps2-ps3 processed_pseudogene Interval_81923 chr18 65915569 65916113 + 0 NA Intergenic Intergenic -4722 ENSMUSG00000117734.1 ENSMUSG00000117734 ENSMUST00000236350 Gm50117 TEC Interval_165825 chr9 53594579 53595601 + 0 NA intron (ENSMUSG00000032047.5, intron 3 of 11) protein_coding-intron (ENSMUSG00000032047.5, intron 3 of 11) -11333 ENSMUSG00000032047.5 ENSMUSG00000032047 ENSMUST00000167130 Acat1 protein_coding Interval_96775 chr2 128122578 128122788 + 0 NA intron (ENSMUSG00000027380.10, intron 10 of 10) protein_coding-intron (ENSMUSG00000027380.10, intron 17 of 17) -3355 ENSMUSG00000027381.16 ENSMUSG00000027381 ENSMUST00000132201 Bcl2l11 protein_coding Interval_104841 chr3 75720834 75721099 + 0 NA Intergenic Intergenic 6176 ENSMUSG00000088638.1 ENSMUSG00000088638 ENSMUST00000158013 Gm25846 snoRNA Interval_136839 chr6 61221929 61222117 + 0 NA intron (ENSMUSG00000039578.17, intron 1 of 1) protein_coding-intron (ENSMUSG00000039578.17, intron 1 of 10) -47498 ENSMUSG00000097924.2 ENSMUSG00000097924 ENSMUST00000181288 A730020E08Rik bidirectional_promoter_lncRNA Interval_77068 chr17 86185865 86186059 + 0 NA intron (ENSMUSG00000045038.14, intron 1 of 14) protein_coding-intron (ENSMUSG00000045038.14, intron 2 of 15) 10387 ENSMUSG00000117546.1 ENSMUSG00000117546 ENSMUST00000234087 AC154542.1 TEC Interval_103294 chr3 38227384 38228640 + 0 NA Intergenic Intergenic 4561 ENSMUSG00000105943.1 ENSMUSG00000105943 ENSMUST00000198365 Gm2965 processed_pseudogene Interval_131195 chr5 135733177 135734975 + 0 NA TTS (ENSMUSG00000005514.14) protein_coding-TTS (ENSMUSG00000005514.14) 1813 ENSMUSG00000099197.1 ENSMUSG00000099197 ENSMUST00000184682 Mir7034 miRNA Interval_111662 chr4 25452024 25452347 + 0 NA Intergenic Intergenic 32836 ENSMUSG00000082451.1 ENSMUSG00000082451 ENSMUST00000121579 Gm11894 processed_pseudogene Interval_103731 chr3 52161638 52162083 + 0 NA intron (ENSMUSG00000103655.1, intron 2 of 3) lincRNA-intron (ENSMUSG00000103655.1, intron 2 of 3) 18112 ENSMUSG00000103726.1 ENSMUSG00000103726 ENSMUST00000193192 Gm30074 lincRNA Interval_87974 chr19 57482216 57483091 + 0 NA intron (ENSMUSG00000025086.13, intron 3 of 3) protein_coding-intron (ENSMUSG00000025086.13, intron 4 of 6) -25911 ENSMUSG00000117655.1 ENSMUSG00000117655 ENSMUST00000234605 6720468P15Rik lincRNA Interval_153727 chr8 5440590 5441090 + 0 NA intron (ENSMUSG00000109313.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000109313.1, intron 1 of 2) 150 ENSMUSG00000109313.1 ENSMUSG00000109313 ENSMUST00000208141 Gm44693 lincRNA Interval_7295 chr1 128504167 128505680 + 0 NA Intergenic Intergenic 10194 ENSMUSG00000100941.1 ENSMUSG00000100941 ENSMUST00000188035 Gm29597 processed_pseudogene Interval_67691 chr16 55984080 55984272 + 0 NA intron (ENSMUSG00000022601.11, intron 3 of 10) protein_coding-intron (ENSMUSG00000022601.11, intron 3 of 10) -9559 ENSMUSG00000102101.1 ENSMUSG00000102101 ENSMUST00000186480 Zbtb11os1 antisense Interval_66739 chr16 36874628 36875838 + 0 NA promoter-TSS (ENSMUSG00000034243.17) protein_coding-promoter-TSS (ENSMUSG00000034243.17) 93 ENSMUSG00000116908.1 ENSMUSG00000116908 ENSMUST00000135406 Gm49599 TEC Interval_92939 chr2 68832932 68833165 + 0 NA intron (ENSMUSG00000109667.1, intron 2 of 3) lincRNA-intron (ENSMUSG00000109667.1, intron 2 of 3) 2031 ENSMUSG00000082836.1 ENSMUSG00000082836 ENSMUST00000119276 Gm13612 processed_pseudogene Interval_127049 chr5 99940975 99942340 + 0 NA intron (ENSMUSG00000105078.2, intron 5 of 5) protein_coding-intron (ENSMUSG00000105078.2, intron 5 of 5) -13276 ENSMUSG00000089062.1 ENSMUSG00000089062 ENSMUST00000158437 Gm22838 snRNA Interval_56790 chr14 122106766 122107677 + 0 NA promoter-TSS (ENSMUSG00000085615.2) lincRNA-promoter-TSS (ENSMUSG00000085615.2) -47 ENSMUSG00000025544.13 ENSMUSG00000025544 ENSMUST00000171318 Tm9sf2 protein_coding Interval_159847 chr8 104340387 104341740 + 0 NA exon (ENSMUSG00000031875.7, exon 2 of 2) protein_coding-exon (ENSMUSG00000031875.7, exon 2 of 2) 536 ENSMUSG00000031875.7 ENSMUSG00000031875 ENSMUST00000212734 Cmtm3 protein_coding Interval_116718 chr4 116819895 116821769 + 0 NA exon (ENSMUSG00000043155.4, exon 1 of 1) protein_coding-exon (ENSMUSG00000043155.4, exon 1 of 1) 875 ENSMUSG00000043155.4 ENSMUSG00000043155 ENSMUST00000055436 Hpdl protein_coding Interval_37783 chr12 71969756 71969957 + 0 NA intron (ENSMUSG00000034574.10, intron 17 of 25) protein_coding-intron (ENSMUSG00000034574.10, intron 17 of 25) 79403 ENSMUSG00000114155.1 ENSMUSG00000114155 ENSMUST00000221336 Gm7986 processed_pseudogene Interval_17440 chr10 76735168 76735695 + 0 NA Intergenic Intergenic -5158 ENSMUSG00000112291.1 ENSMUSG00000112291 ENSMUST00000218963 Gm48276 lincRNA Interval_18865 chr10 91481489 91481700 + 0 NA Intergenic Intergenic -33214 ENSMUSG00000111051.1 ENSMUSG00000111051 ENSMUST00000213414 Gm47084 processed_pseudogene Interval_90927 chr2 33510730 33511455 + 0 NA Intergenic Intergenic 21310 ENSMUSG00000086939.1 ENSMUSG00000086939 ENSMUST00000134014 Gm13530 lincRNA Interval_130864 chr5 132728604 132729659 + 0 NA Intergenic Intergenic -67022 ENSMUSG00000103500.1 ENSMUSG00000103500 ENSMUST00000192042 Gm38373 TEC Interval_162258 chr8 126494331 126494610 + 0 NA Intergenic Intergenic -18058 ENSMUSG00000074026.3 ENSMUSG00000074026 ENSMUST00000098307 Gm6091 processed_pseudogene Interval_109978 chr3 152283611 152283811 + 0 NA exon (ENSMUSG00000054942.13, exon 14 of 14) protein_coding-exon (ENSMUSG00000054942.13, exon 14 of 14) -17943 ENSMUSG00000039103.12 ENSMUSG00000039103 ENSMUST00000199752 Nexn protein_coding Interval_83872 chr19 5253324 5253932 + 0 NA intron (ENSMUSG00000024855.10, intron 2 of 4) protein_coding-intron (ENSMUSG00000024855.10, intron 1 of 23) -5122 ENSMUSG00000118104.1 ENSMUSG00000118104 ENSMUST00000235422 Gm50189 processed_pseudogene Interval_137497 chr6 72763753 72764296 + 0 NA intron (ENSMUSG00000055799.13, intron 2 of 5) protein_coding-intron (ENSMUSG00000055799.13, intron 3 of 11) -12110 ENSMUSG00000104501.1 ENSMUSG00000104501 ENSMUST00000193564 Gm37736 TEC Interval_75930 chr17 73162549 73162938 + 0 NA promoter-TSS (ENSMUSG00000054469.14) protein_coding-promoter-TSS (ENSMUSG00000054469.14) 28942 ENSMUSG00000081492.1 ENSMUSG00000081492 ENSMUST00000118042 Gm9311 processed_pseudogene Interval_4124 chr1 69723983 69724749 + 0 NA Intergenic Intergenic -40209 ENSMUSG00000025997.13 ENSMUSG00000025997 ENSMUST00000188919 Ikzf2 protein_coding Interval_62326 chr15 90214723 90215400 + 0 NA Intergenic Intergenic -9288 ENSMUSG00000075470.2 ENSMUSG00000075470 ENSMUST00000231200 Alg10b protein_coding Interval_30506 chr11 94818731 94819823 + 0 NA Intergenic Intergenic -5929 ENSMUSG00000081478.1 ENSMUSG00000081478 ENSMUST00000121794 AA623943 unprocessed_pseudogene Interval_119275 chr4 136592998 136594969 + 0 NA intron (ENSMUSG00000036940.15, intron 1 of 18) protein_coding-intron (ENSMUSG00000036940.15, intron 1 of 16) -9323 ENSMUSG00000082711.1 ENSMUSG00000082711 ENSMUST00000118562 Gm12987 processed_pseudogene Interval_103052 chr3 34740053 34740416 + 0 NA Intergenic Intergenic -23572 ENSMUSG00000105153.4 ENSMUSG00000105153 ENSMUST00000198364 Gm3143 lincRNA Interval_117740 chr4 125941420 125942425 + 0 NA Intergenic Intergenic -19505 ENSMUSG00000085562.7 ENSMUSG00000085562 ENSMUST00000144539 2610028E06Rik lincRNA Interval_134222 chr6 23202732 23202936 + 0 NA Intergenic Intergenic -35420 ENSMUSG00000107032.2 ENSMUSG00000107032 ENSMUST00000096093 Gm5301 processed_pseudogene Interval_118557 chr4 132490684 132492425 + 0 NA TTS (ENSMUSG00000028893.8) protein_coding-TTS (ENSMUSG00000028893.8) 18095 ENSMUSG00000086997.1 ENSMUSG00000086997 ENSMUST00000131733 Gm12981 antisense Interval_165719 chr9 51625559 51625766 + 0 NA intron (ENSMUSG00000078308.2, intron 1 of 1) lincRNA-intron (ENSMUSG00000078308.2, intron 1 of 1) 2917 ENSMUSG00000111162.1 ENSMUSG00000111162 ENSMUST00000216682 Gm7293 processed_pseudogene Interval_43685 chr13 34978551 34979128 + 0 NA intron (ENSMUSG00000021417.15, intron 8 of 9) protein_coding-intron (ENSMUSG00000021417.15, intron 8 of 9) 14781 ENSMUSG00000085962.8 ENSMUSG00000085962 ENSMUST00000171079 Gm16984 antisense Interval_159372 chr8 94136833 94137521 + 0 NA promoter-TSS (ENSMUSG00000031757.7) protein_coding-promoter-TSS (ENSMUSG00000031757.7) -20 ENSMUSG00000031757.7 ENSMUSG00000031757 ENSMUST00000034207 Mt4 protein_coding Interval_16973 chr10 70222367 70223320 + 0 NA Intergenic Intergenic 18133 ENSMUSG00000019933.7 ENSMUSG00000019933 ENSMUST00000189468 Mrln protein_coding Interval_49225 chr13 109631502 109633612 + 0 NA promoter-TSS (ENSMUSG00000021699.17) protein_coding-promoter-TSS (ENSMUSG00000021699.17) -271252 ENSMUSG00000084651.1 ENSMUSG00000084651 ENSMUST00000122702 Mir1904 miRNA Interval_156522 chr8 49439844 49440167 + 0 NA intron (ENSMUSG00000031559.15, intron 5 of 9) lincRNA-intron (ENSMUSG00000031559.15, intron 3 of 6) 24734 ENSMUSG00000110137.1 ENSMUSG00000110137 ENSMUST00000210206 Gm45577 TEC Interval_151933 chr7 127636799 127638003 + 0 NA Intergenic Intergenic 20833 ENSMUSG00000108766.1 ENSMUSG00000108766 ENSMUST00000206375 Gm44760 TEC Interval_34332 chr12 3436449 3437997 + 0 NA intron (ENSMUSG00000037486.18, intron 1 of 11) protein_coding-intron (ENSMUSG00000037486.18, intron 1 of 10) -1292 ENSMUSG00000118499.1 ENSMUSG00000118499 ENSMUST00000239031 AC160138.1 processed_pseudogene Interval_25076 chr11 43701440 43701630 + 0 NA intron (ENSMUSG00000044950.7, intron 1 of 1) protein_coding-intron (ENSMUSG00000044950.7, intron 1 of 1) 18987 ENSMUSG00000044950.7 ENSMUSG00000044950 ENSMUST00000130467 Pwwp2a protein_coding Interval_116294 chr4 109406326 109407648 + 0 NA promoter-TSS (ENSMUSG00000028555.15) protein_coding-promoter-TSS (ENSMUSG00000028555.15) -2775 ENSMUSG00000085873.1 ENSMUSG00000085873 ENSMUST00000150239 Ttc39aos1 antisense Interval_173546 chrX 99113332 99114469 + 0 NA Intergenic Intergenic -24231 ENSMUSG00000031217.8 ENSMUSG00000031217 ENSMUST00000151750 Efnb1 protein_coding Interval_136632 chr6 56834860 56835778 + 0 NA intron (ENSMUSG00000029781.7, intron 1 of 9) protein_coding-intron (ENSMUSG00000029781.7, intron 1 of 9) -14014 ENSMUSG00000029781.7 ENSMUSG00000029781 ENSMUST00000147159 Fkbp9 protein_coding Interval_32942 chr11 113278364 113279152 + 0 NA intron (ENSMUSG00000041654.15, intron 7 of 9) protein_coding-intron (ENSMUSG00000041654.15, intron 8 of 10) -69089 ENSMUSG00000085421.1 ENSMUSG00000085421 ENSMUST00000130373 4732490B19Rik lincRNA Interval_133670 chr6 8345199 8346342 + 0 NA intron (ENSMUSG00000089862.8, intron 2 of 2) protein_coding-intron (ENSMUSG00000089862.8, intron 1 of 2) 18366 ENSMUSG00000089890.1 ENSMUSG00000089890 ENSMUST00000161366 Gm16055 antisense Interval_170177 chr9 105960398 105960994 + 0 NA promoter-TSS (ENSMUSG00000091345.9) protein_coding-promoter-TSS (ENSMUSG00000091345.9) -53 ENSMUSG00000091345.9 ENSMUSG00000091345 ENSMUST00000189127 Col6a5 protein_coding Interval_67134 chr16 43753049 43754346 + 0 NA promoter-TSS (ENSMUSG00000022705.5) protein_coding-promoter-TSS (ENSMUSG00000022705.5) -329 ENSMUSG00000022705.5 ENSMUSG00000022705 ENSMUST00000023390 Drd3 protein_coding Interval_28298 chr11 74992369 74992582 + 0 NA TTS (ENSMUSG00000038290.15) protein_coding-TTS (ENSMUSG00000038290.15) 1019 ENSMUSG00000101295.1 ENSMUSG00000101295 ENSMUST00000189608 Gm28180 antisense Interval_21074 chr10 125948970 125949994 + 0 NA Intergenic Intergenic -16752 ENSMUSG00000020105.9 ENSMUSG00000020105 ENSMUST00000219974 Lrig3 protein_coding Interval_18963 chr10 93430873 93431117 + 0 NA Intergenic Intergenic -2112 ENSMUSG00000098679.1 ENSMUSG00000098679 ENSMUST00000183565 Mir7688 miRNA Interval_153621 chr8 3959171 3959377 + 0 NA Intergenic Intergenic -13221 ENSMUSG00000040165.14 ENSMUSG00000040165 ENSMUST00000153915 Cd209c protein_coding Interval_77604 chr17 92940656 92941733 + 0 NA Intergenic Intergenic -35327 ENSMUSG00000117409.1 ENSMUSG00000117409 ENSMUST00000234475 Gm49996 processed_pseudogene Interval_147949 chr7 75808045 75808548 + 0 NA Intergenic Intergenic 24264 ENSMUSG00000097116.1 ENSMUSG00000097116 ENSMUST00000180744 Gm26729 processed_pseudogene Interval_41458 chr12 114378359 114379584 + 0 NA Intergenic Intergenic -12017 ENSMUSG00000076676.2 ENSMUSG00000076676 ENSMUST00000103485 Ighv12-3 IG_V_gene Interval_129370 chr5 119594508 119594704 + 0 NA intron (ENSMUSG00000087516.7, intron 1 of 5) antisense-intron (ENSMUSG00000087516.7, intron 1 of 5) 3598 ENSMUSG00000106991.1 ENSMUSG00000106991 ENSMUST00000202546 Gm43399 TEC Interval_67151 chr16 43933257 43933792 + 0 NA intron (ENSMUSG00000022701.18, intron 7 of 15) protein_coding-intron (ENSMUSG00000022701.18, intron 7 of 7) 43724 ENSMUSG00000022701.18 ENSMUSG00000022701 ENSMUST00000122440 Ccdc191 protein_coding Interval_157490 chr8 70863165 70864079 + 0 NA promoter-TSS (ENSMUSG00000002908.17) protein_coding-promoter-TSS (ENSMUSG00000002908.17) -364 ENSMUSG00000002908.17 ENSMUSG00000002908 ENSMUST00000212414 Kcnn1 protein_coding Interval_167390 chr9 68561853 68562198 + 0 NA Intergenic Intergenic 9630 ENSMUSG00000111404.1 ENSMUSG00000111404 ENSMUST00000216343 Gm47169 processed_pseudogene Interval_38299 chr12 76988553 76989013 + 0 NA intron (ENSMUSG00000112857.1, intron 2 of 3) lincRNA-intron (ENSMUSG00000112857.1, intron 2 of 3) 16323 ENSMUSG00000112857.1 ENSMUSG00000112857 ENSMUST00000219581 Gm35041 lincRNA Interval_61219 chr15 80064821 80065809 + 0 NA Intergenic Intergenic 13276 ENSMUSG00000077734.1 ENSMUSG00000077734 ENSMUST00000104546 Snord83b snoRNA Interval_142814 chr6 145989168 145990442 + 0 NA Intergenic Intergenic 11958 ENSMUSG00000108161.1 ENSMUSG00000108161 ENSMUST00000203815 Gm32914 lincRNA Interval_165745 chr9 52102348 52102696 + 0 NA Intergenic Intergenic 1257 ENSMUSG00000099213.1 ENSMUSG00000099213 ENSMUST00000185123 Gm27686 miRNA Interval_8571 chr1 143140198 143140612 + 0 NA Intergenic Intergenic -45789 ENSMUSG00000101795.2 ENSMUSG00000101795 ENSMUST00000185806 Gm5835 processed_pseudogene Interval_122169 chr5 18630593 18631925 + 0 NA Intergenic Intergenic -141065 ENSMUSG00000104718.1 ENSMUSG00000104718 ENSMUST00000199456 Gm31752 lincRNA Interval_1555 chr1 25758073 25758273 + 0 NA exon (ENSMUSG00000102659.1, exon 1 of 1) TEC-exon (ENSMUSG00000102659.1, exon 1 of 1) 860 ENSMUSG00000102659.1 ENSMUSG00000102659 ENSMUST00000195723 Gm37077 TEC Interval_52742 chr14 49275034 49276199 + 0 NA Intergenic Intergenic 23657 ENSMUSG00000021852.14 ENSMUSG00000021852 ENSMUST00000146164 Slc35f4 protein_coding Interval_129461 chr5 120337786 120339122 + 0 NA Intergenic Intergenic 7514 ENSMUSG00000107141.1 ENSMUSG00000107141 ENSMUST00000200789 Gm42654 lincRNA Interval_158036 chr8 78204032 78204460 + 0 NA Intergenic Intergenic -6397 ENSMUSG00000110328.1 ENSMUSG00000110328 ENSMUST00000210921 Gm45574 processed_pseudogene Interval_161893 chr8 123497374 123499024 + 0 NA intron (ENSMUSG00000031967.15, intron 3 of 3) protein_coding-intron (ENSMUSG00000031967.15, intron 12 of 16) 5238 ENSMUSG00000031967.15 ENSMUSG00000031967 ENSMUST00000146795 Afg3l1 protein_coding Interval_124119 chr5 38481351 38482719 + 0 NA TTS (ENSMUSG00000005107.13) protein_coding-TTS (ENSMUSG00000005107.13) -1853 ENSMUSG00000005107.13 ENSMUSG00000005107 ENSMUST00000156076 Slc2a9 protein_coding Interval_20157 chr10 115323264 115323482 + 0 NA Intergenic Intergenic 7727 ENSMUSG00000112301.1 ENSMUSG00000112301 ENSMUST00000218348 Gm10752 TEC Interval_7148 chr1 127228928 127229310 + 0 NA intron (ENSMUSG00000036155.13, intron 1 of 7) protein_coding-intron (ENSMUSG00000036155.13, intron 1 of 17) -12972 ENSMUSG00000104039.1 ENSMUSG00000104039 ENSMUST00000191635 Gm37772 TEC Interval_69385 chr16 92620861 92621863 + 0 NA intron (ENSMUSG00000022952.17, intron 3 of 4) protein_coding-intron (ENSMUSG00000022952.17, intron 6 of 7) 8548 ENSMUSG00000097139.3 ENSMUSG00000097139 ENSMUST00000180989 Gm26626 antisense Interval_99665 chr2 164056581 164056821 + 0 NA intron (ENSMUSG00000018322.10, intron 2 of 3) protein_coding-intron (ENSMUSG00000018322.10, intron 5 of 6) 9014 ENSMUSG00000018322.10 ENSMUSG00000018322 ENSMUST00000109384 Tomm34 protein_coding Interval_116063 chr4 107357078 107357336 + 0 NA intron (ENSMUSG00000057375.13, intron 2 of 2) protein_coding-intron (ENSMUSG00000057375.13, intron 9 of 9) -5854 ENSMUSG00000086041.1 ENSMUSG00000086041 ENSMUST00000156265 Gm12869 antisense Interval_114577 chr4 82619565 82620230 + 0 NA intron (ENSMUSG00000008575.17, intron 1 of 1) protein_coding-intron (ENSMUSG00000008575.17, intron 1 of 1) -22503 ENSMUSG00000084357.1 ENSMUSG00000084357 ENSMUST00000118347 Gm11268 processed_pseudogene Interval_19209 chr10 95514199 95515878 + 0 NA promoter-TSS (ENSMUSG00000074781.5) protein_coding-promoter-TSS (ENSMUSG00000074781.5) -616 ENSMUSG00000074781.5 ENSMUSG00000074781 ENSMUST00000217757 Ube2n protein_coding Interval_22293 chr11 8582301 8582728 + 0 NA intron (ENSMUSG00000020422.14, intron 3 of 30) protein_coding-intron (ENSMUSG00000020422.14, intron 3 of 30) 82167 ENSMUSG00000020422.14 ENSMUSG00000020422 ENSMUST00000134823 Tns3 protein_coding Interval_13796 chr10 22579685 22580103 + 0 NA Intergenic Intergenic -69114 ENSMUSG00000037490.5 ENSMUSG00000037490 ENSMUST00000159174 Slc2a12 protein_coding Interval_79810 chr18 35247833 35248750 + 0 NA intron (ENSMUSG00000037815.7, intron 11 of 15) protein_coding-intron (ENSMUSG00000037815.7, intron 13 of 17) -1082 ENSMUSG00000037815.7 ENSMUSG00000037815 ENSMUST00000237475 Ctnna1 protein_coding Interval_173848 chrX 105937852 105939857 + 0 NA Intergenic Intergenic -63549 ENSMUSG00000031229.16 ENSMUSG00000031229 ENSMUST00000126345 Atrx protein_coding Interval_25085 chr11 43760057 43760863 + 0 NA Intergenic Intergenic -12468 ENSMUSG00000041278.10 ENSMUSG00000041278 ENSMUST00000147984 Ttc1 protein_coding Interval_80836 chr18 48206411 48206677 + 0 NA Intergenic Intergenic -136522 ENSMUSG00000118097.1 ENSMUSG00000118097 ENSMUST00000236601 Gm5237 processed_pseudogene Interval_121294 chr4 154778790 154779056 + 0 NA Intergenic Intergenic -58536 ENSMUSG00000046637.3 ENSMUSG00000046637 ENSMUST00000137684 Ttc34 protein_coding Interval_159843 chr8 104288705 104289444 + 0 NA intron (ENSMUSG00000074127.6, intron 2 of 4) protein_coding-intron (ENSMUSG00000074127.6, intron 2 of 4) 4100 ENSMUSG00000074127.6 ENSMUSG00000074127 ENSMUST00000212487 Cmtm2a protein_coding Interval_14634 chr10 37252165 37252368 + 0 NA Intergenic Intergenic 11482 ENSMUSG00000110799.1 ENSMUSG00000110799 ENSMUST00000217044 4930543K20Rik lincRNA Interval_138674 chr6 91085446 91085744 + 0 NA TTS (ENSMUSG00000030091.17) protein_coding-TTS (ENSMUSG00000030091.17) 13027 ENSMUSG00000030091.17 ENSMUSG00000030091 ENSMUST00000203434 Nup210 protein_coding Interval_151423 chr7 122256292 122256562 + 0 NA Intergenic Intergenic -6402 ENSMUSG00000108708.1 ENSMUSG00000108708 ENSMUST00000206804 Gm29977 processed_pseudogene Interval_154588 chr8 21623706 21624631 + 0 NA Intergenic Intergenic 5985 ENSMUSG00000060070.5 ENSMUSG00000060070 ENSMUST00000074343 Defa26 protein_coding Interval_142129 chr6 137469565 137469775 + 0 NA Intergenic Intergenic 38365 ENSMUSG00000107759.1 ENSMUSG00000107759 ENSMUST00000204925 Gm44258 sense_intronic Interval_156728 chr8 57636577 57636795 + 0 NA intron (ENSMUSG00000031608.13, intron 1 of 5) protein_coding-intron (ENSMUSG00000031608.13, intron 1 of 11) 3447 ENSMUSG00000110238.1 ENSMUSG00000110238 ENSMUST00000211401 Gm19269 TEC Interval_48069 chr13 95746415 95746923 + 0 NA intron (ENSMUSG00000021676.10, intron 4 of 6) protein_coding-intron (ENSMUSG00000021676.10, intron 4 of 35) 10086 ENSMUSG00000118436.1 ENSMUSG00000118436 ENSMUST00000238548 Gm32880 antisense Interval_73077 chr17 34644654 34645547 + 0 NA intron (ENSMUSG00000033739.8, intron 1 of 1) protein_coding-intron (ENSMUSG00000033739.8, intron 1 of 1) 259 ENSMUSG00000033739.8 ENSMUSG00000033739 ENSMUST00000174796 Fkbpl protein_coding Interval_32687 chr11 109659998 109661233 + 0 NA intron (ENSMUSG00000020612.16, intron 4 of 11) protein_coding-intron (ENSMUSG00000020612.16, intron 3 of 10) -5329 ENSMUSG00000020612.16 ENSMUSG00000020612 ENSMUST00000155532 Prkar1a protein_coding Interval_52470 chr14 46781772 46782573 + 0 NA intron (ENSMUSG00000015759.11, intron 2 of 4) protein_coding-intron (ENSMUSG00000015759.11, intron 2 of 4) -1910 ENSMUSG00000015759.11 ENSMUSG00000015759 ENSMUST00000146629 Cnih1 protein_coding Interval_146877 chr7 54532141 54532757 + 0 NA Intergenic Intergenic 78749 ENSMUSG00000109050.1 ENSMUSG00000109050 ENSMUST00000207666 Gm6290 processed_pseudogene Interval_97344 chr2 135072228 135073518 + 0 NA intron (ENSMUSG00000051177.16, intron 3 of 6) protein_coding-intron (ENSMUSG00000051177.16, intron 3 of 31) 142743 ENSMUSG00000085247.1 ENSMUSG00000085247 ENSMUST00000138303 4930545L23Rik antisense Interval_53086 chr14 54370627 54371808 + 0 NA intron (ENSMUSG00000000958.10, intron 9 of 10) protein_coding-intron (ENSMUSG00000000958.10, intron 8 of 9) 3586 ENSMUSG00000000959.7 ENSMUSG00000000959 ENSMUST00000228719 Oxa1l protein_coding Interval_23447 chr11 22688430 22688910 + 0 NA Intergenic Intergenic 44316 ENSMUSG00000085979.1 ENSMUSG00000085979 ENSMUST00000143643 Gm12055 lincRNA Interval_85178 chr19 23408997 23409269 + 0 NA intron (ENSMUSG00000033207.7, intron 2 of 12) protein_coding-intron (ENSMUSG00000033207.7, intron 2 of 13) -9210 ENSMUSG00000118092.1 ENSMUSG00000118092 ENSMUST00000235597 Gm50445 lincRNA Interval_30510 chr11 94848431 94849377 + 0 NA Intergenic Intergenic -2812 ENSMUSG00000081586.3 ENSMUSG00000081586 ENSMUST00000120215 Gm11544 unprocessed_pseudogene Interval_137002 chr6 65916765 65916976 + 0 NA intron (ENSMUSG00000029913.14, intron 4 of 5) protein_coding-intron (ENSMUSG00000029913.14, intron 9 of 10) 34091 ENSMUSG00000092394.1 ENSMUSG00000092394 ENSMUST00000061905 Gm20445 processed_pseudogene Interval_55963 chr14 103349495 103350008 + 0 NA Intergenic Intergenic -2951 ENSMUSG00000033004.16 ENSMUSG00000033004 ENSMUST00000162537 Mycbp2 protein_coding Interval_164250 chr9 34446920 34447429 + 0 NA Intergenic Intergenic -12007 ENSMUSG00000110925.1 ENSMUSG00000110925 ENSMUST00000216503 Gm47858 lincRNA Interval_166417 chr9 59290759 59292220 + 0 NA promoter-TSS (ENSMUSG00000025236.11) protein_coding-promoter-TSS (ENSMUSG00000025236.11) -69 ENSMUSG00000025236.11 ENSMUSG00000025236 ENSMUST00000215994 Adpgk protein_coding Interval_38622 chr12 80615037 80616215 + 0 NA intron (ENSMUSG00000021130.8, intron 3 of 3) protein_coding-intron (ENSMUSG00000021130.8, intron 3 of 3) 2330 ENSMUSG00000112606.1 ENSMUSG00000112606 ENSMUST00000218548 Gm46364 processed_pseudogene Interval_97029 chr2 130648837 130650964 + 0 NA Intergenic Intergenic 4877 ENSMUSG00000068290.11 ENSMUSG00000068290 ENSMUST00000135072 Ddrgk1 protein_coding Interval_120190 chr4 143972782 143973083 + 0 NA Intergenic Intergenic -5982 ENSMUSG00000078510.3 ENSMUSG00000078510 ENSMUST00000105763 Gm13101 protein_coding Interval_47207 chr13 78074226 78075009 + 0 NA intron (ENSMUSG00000064138.14, intron 10 of 10) protein_coding-intron (ENSMUSG00000064138.14, intron 9 of 9) -4771 ENSMUSG00000114812.1 ENSMUSG00000114812 ENSMUST00000224621 Gm48254 processed_pseudogene Interval_131637 chr5 138994682 138998259 + 0 NA promoter-TSS (ENSMUSG00000025856.15) protein_coding-promoter-TSS (ENSMUSG00000025856.15) 1414 ENSMUSG00000075585.3 ENSMUSG00000075585 ENSMUST00000187923 6330403L08Rik antisense Interval_106633 chr3 97942437 97942847 + 0 NA intron (ENSMUSG00000074388.3, intron 1 of 1) lincRNA-intron (ENSMUSG00000074388.3, intron 1 of 1) 12469 ENSMUSG00000074388.3 ENSMUSG00000074388 ENSMUST00000098828 Gm5544 lincRNA Interval_30334 chr11 93678773 93679517 + 0 NA Intergenic Intergenic -15937 ENSMUSG00000080872.1 ENSMUSG00000080872 ENSMUST00000122414 Gm11506 processed_pseudogene Interval_24036 chr11 29679944 29680222 + 0 NA Intergenic Intergenic 9752 ENSMUSG00000083917.1 ENSMUSG00000083917 ENSMUST00000120906 Gm12093 processed_pseudogene Interval_102752 chr3 30792733 30794055 + 0 NA promoter-TSS (ENSMUSG00000027706.8) protein_coding-promoter-TSS (ENSMUSG00000027706.8) 170 ENSMUSG00000097786.3 ENSMUSG00000097786 ENSMUST00000180833 4933429H19Rik antisense Interval_129396 chr5 119720187 119722121 + 0 NA Intergenic Intergenic -29936 ENSMUSG00000086847.1 ENSMUSG00000086847 ENSMUST00000135385 Tbx3os2 lincRNA Interval_67035 chr16 41749881 41750063 + 0 NA intron (ENSMUSG00000061080.11, intron 3 of 8) protein_coding-intron (ENSMUSG00000061080.11, intron 1 of 5) -318880 ENSMUSG00000101463.1 ENSMUSG00000101463 ENSMUST00000186327 Gm28750 antisense Interval_162792 chr9 9144537 9144860 + 0 NA intron (ENSMUSG00000050730.17, intron 3 of 5) protein_coding-intron (ENSMUSG00000050730.17, intron 3 of 22) -91590 ENSMUSG00000085253.3 ENSMUSG00000085253 ENSMUST00000150263 Gm16833 antisense Interval_58518 chr15 35415658 35415938 + 0 NA intron (ENSMUSG00000037646.10, intron 4 of 8) protein_coding-intron (ENSMUSG00000037646.10, intron 3 of 61) -42651 ENSMUSG00000115829.1 ENSMUSG00000115829 ENSMUST00000228236 Gm48960 antisense Interval_157521 chr8 71189828 71190685 + 0 NA Intergenic Intergenic -33693 ENSMUSG00000110664.1 ENSMUSG00000110664 ENSMUST00000212311 Aprt-ps processed_pseudogene Interval_52218 chr14 40768641 40769512 + 0 NA Intergenic Intergenic 21849 ENSMUSG00000114933.1 ENSMUSG00000114933 ENSMUST00000225171 Gm48040 processed_pseudogene Interval_133660 chr6 8195138 8195356 + 0 NA Intergenic Intergenic -15073 ENSMUSG00000068794.7 ENSMUSG00000068794 ENSMUST00000213284 Col28a1 protein_coding Interval_77477 chr17 89633863 89634529 + 0 NA Intergenic Intergenic 118330 ENSMUSG00000117511.1 ENSMUSG00000117511 ENSMUST00000234973 Gm50061 lincRNA Interval_154120 chr8 12882071 12882364 + 0 NA intron (ENSMUSG00000079146.2, intron 1 of 2) protein_coding-intron (ENSMUSG00000031442.21, intron 2 of 29) 1499 ENSMUSG00000079146.2 ENSMUSG00000079146 ENSMUST00000149938 Gm15353 antisense Interval_125978 chr5 76487362 76487728 + 0 NA intron (ENSMUSG00000091204.8, intron 2 of 3) protein_coding-intron (ENSMUSG00000091204.8, intron 1 of 2) 3505 ENSMUSG00000091204.8 ENSMUSG00000091204 ENSMUST00000172369 Gm7271 protein_coding Interval_118274 chr4 129972128 129972438 + 0 NA Intergenic Intergenic 11909 ENSMUSG00000085389.7 ENSMUSG00000085389 ENSMUST00000139884 1700003M07Rik lincRNA Interval_146945 chr7 56111510 56112329 + 0 NA intron (ENSMUSG00000030451.16, intron 16 of 18) protein_coding-intron (ENSMUSG00000030451.16, intron 17 of 92) 43935 ENSMUSG00000030451.16 ENSMUSG00000030451 ENSMUST00000205678 Herc2 protein_coding Interval_26457 chr11 57970440 57971495 + 0 NA intron (ENSMUSG00000086666.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000086666.1, intron 1 of 1) 1625 ENSMUSG00000089280.1 ENSMUSG00000089280 ENSMUST00000158655 Gm26025 misc_RNA Interval_125619 chr5 72791622 72791832 + 0 NA intron (ENSMUSG00000029217.16, intron 3 of 9) protein_coding-intron (ENSMUSG00000029217.16, intron 3 of 18) 20347 ENSMUSG00000106739.1 ENSMUSG00000106739 ENSMUST00000202091 Gm43499 TEC Interval_38106 chr12 75679268 75679596 + 0 NA Intergenic Intergenic -9905 ENSMUSG00000045690.8 ENSMUSG00000045690 ENSMUST00000187307 Wdr89 protein_coding Interval_48726 chr13 102387887 102388737 + 0 NA Intergenic Intergenic -21160 ENSMUSG00000114444.1 ENSMUSG00000114444 ENSMUST00000225142 Gm47008 processed_pseudogene Interval_110498 chr3 159739312 159739652 + 0 NA Intergenic Intergenic -100257 ENSMUSG00000028173.10 ENSMUSG00000028173 ENSMUST00000196782 Wls protein_coding Interval_100916 chr2 173321214 173321981 + 0 NA Intergenic Intergenic 44899 ENSMUSG00000087600.1 ENSMUSG00000087600 ENSMUST00000150185 Pmepa1os antisense Interval_128297 chr5 112374641 112376356 + 0 NA intron (ENSMUSG00000042328.13, intron 1 of 1) protein_coding-intron (ENSMUSG00000042328.13, intron 13 of 13) 163 ENSMUSG00000042328.13 ENSMUSG00000042328 ENSMUST00000177121 Hps4 protein_coding Interval_144751 chr7 28013311 28014641 + 0 NA intron (ENSMUSG00000096916.7, intron 1 of 5) protein_coding-intron (ENSMUSG00000096916.7, intron 1 of 5) 139 ENSMUSG00000096916.7 ENSMUSG00000096916 ENSMUST00000180024 Zfp850 protein_coding Interval_2923 chr1 50752356 50752683 + 0 NA Intergenic Intergenic -62856 ENSMUSG00000100816.1 ENSMUSG00000100816 ENSMUST00000187677 Gm28321 lincRNA Interval_26597 chr11 59106042 59106669 + 0 NA exon (ENSMUSG00000061462.18, exon 15 of 90) protein_coding-exon (ENSMUSG00000061462.18, exon 15 of 90) 30020 ENSMUSG00000061462.18 ENSMUSG00000061462 ENSMUST00000133040 Obscn protein_coding Interval_5382 chr1 88205237 88206091 + 0 NA exon (ENSMUSG00000081984.3, exon 1 of 1) protein_coding-exon (ENSMUSG00000081984.3, exon 1 of 1) 118 ENSMUSG00000081984.3 ENSMUSG00000081984 ENSMUST00000119972 Dnajb3 protein_coding Interval_91146 chr2 35458404 35458619 + 0 NA intron (ENSMUSG00000035778.17, intron 1 of 1) protein_coding-intron (ENSMUSG00000035778.17, intron 1 of 8) -21200 ENSMUSG00000106856.1 ENSMUSG00000106856 ENSMUST00000202132 Gm43761 TEC Interval_11644 chr1 183717180 183717622 + 0 NA Intergenic Intergenic -31576 ENSMUSG00000103305.1 ENSMUSG00000103305 ENSMUST00000193310 Gm34068 lincRNA Interval_67758 chr16 56897174 56897951 + 0 NA intron (ENSMUSG00000084999.2, intron 1 of 2) antisense-intron (ENSMUSG00000084999.2, intron 1 of 2) 10984 ENSMUSG00000084999.2 ENSMUSG00000084999 ENSMUST00000211219 Gm15839 antisense Interval_90735 chr2 32191662 32192881 + 0 NA intron (ENSMUSG00000039262.16, intron 4 of 28) protein_coding-intron (ENSMUSG00000039262.16, intron 6 of 29) 19100 ENSMUSG00000099155.1 ENSMUSG00000099155 ENSMUST00000184513 Gm27805 miRNA Interval_93271 chr2 71606782 71608883 + 0 NA Intergenic Intergenic -61882 ENSMUSG00000023391.8 ENSMUSG00000023391 ENSMUST00000134249 Dlx2 protein_coding Interval_5153 chr1 86069718 86069938 + 0 NA intron (ENSMUSG00000026229.17, intron 1 of 4) protein_coding-intron (ENSMUSG00000026229.17, intron 1 of 24) 5187 ENSMUSG00000026229.17 ENSMUSG00000026229 ENSMUST00000149946 Psmd1 protein_coding Interval_65945 chr16 30433317 30434064 + 0 NA Intergenic Intergenic -18898 ENSMUSG00000116960.1 ENSMUSG00000116960 ENSMUST00000231864 Gm49679 processed_pseudogene Interval_163102 chr9 15285365 15286785 + 0 NA intron (ENSMUSG00000031938.15, intron 7 of 7) protein_coding-intron (ENSMUSG00000031938.15, intron 7 of 7) -6172 ENSMUSG00000031935.9 ENSMUSG00000031935 ENSMUST00000216406 Med17 protein_coding Interval_173135 chrX 73274533 73275218 + 0 NA intron (ENSMUSG00000058328.13, intron 1 of 8) protein_coding-intron (ENSMUSG00000058328.13, intron 1 of 8) -9485 ENSMUSG00000058147.1 ENSMUSG00000058147 ENSMUST00000080839 Xlr3c protein_coding Interval_47304 chr13 80932959 80933168 + 0 NA Intergenic Intergenic -7348 ENSMUSG00000114554.1 ENSMUSG00000114554 ENSMUST00000224509 5430425K12Rik lincRNA Interval_17588 chr10 78007785 78008204 + 0 NA exon (ENSMUSG00000020277.10, exon 1 of 1) protein_coding-exon (ENSMUSG00000020277.10, exon 1 of 1) 1742 ENSMUSG00000020277.10 ENSMUSG00000020277 ENSMUST00000220304 Pfkl protein_coding Interval_105988 chr3 90475366 90476636 + 0 NA promoter-TSS (ENSMUSG00000001016.12) protein_coding-promoter-TSS (ENSMUSG00000001016.12) -146 ENSMUSG00000001016.12 ENSMUSG00000001016 ENSMUST00000198641 Ilf2 protein_coding Interval_11182 chr1 179923577 179924175 + 0 NA Intergenic Intergenic 1535 ENSMUSG00000104418.1 ENSMUSG00000104418 ENSMUST00000193272 Gm37070 processed_pseudogene Interval_157115 chr8 65394744 65394967 + 0 NA Intergenic Intergenic 27554 ENSMUSG00000064905.1 ENSMUSG00000064905 ENSMUST00000082971 Gm25403 misc_RNA Interval_148738 chr7 84875412 84876418 + 0 NA Intergenic Intergenic -3640 ENSMUSG00000092425.1 ENSMUSG00000092425 ENSMUST00000173536 Gm8018 unprocessed_pseudogene Interval_16763 chr10 68015826 68016063 + 0 NA intron (ENSMUSG00000037846.18, intron 7 of 12) protein_coding-intron (ENSMUSG00000037846.18, intron 6 of 14) 10682 ENSMUSG00000086838.1 ENSMUSG00000086838 ENSMUST00000143555 Gm16212 antisense Interval_121450 chr4 155882345 155882598 + 0 NA intron (ENSMUSG00000029034.9, intron 4 of 16) protein_coding-intron (ENSMUSG00000029034.9, intron 4 of 16) 9284 ENSMUSG00000051557.15 ENSMUSG00000051557 ENSMUST00000130146 Pusl1 protein_coding Interval_149321 chr7 97426545 97426860 + 0 NA Intergenic Intergenic -9183 ENSMUSG00000035686.8 ENSMUSG00000035686 ENSMUST00000206613 Thrsp protein_coding Interval_156638 chr8 56200028 56200412 + 0 NA Intergenic Intergenic -94365 ENSMUSG00000031613.9 ENSMUSG00000031613 ENSMUST00000034026 Hpgd protein_coding Interval_26304 chr11 55953491 55954198 + 0 NA intron (ENSMUSG00000086020.1, intron 1 of 4) antisense-intron (ENSMUSG00000086020.1, intron 1 of 4) 87166 ENSMUSG00000037393.2 ENSMUSG00000037393 ENSMUST00000037682 Nmur2 protein_coding Interval_42043 chr13 6777950 6779042 + 0 NA Intergenic Intergenic 105357 ENSMUSG00000113545.1 ENSMUSG00000113545 ENSMUST00000223351 Gm48238 processed_pseudogene Interval_78929 chr18 21952980 21953240 + 0 NA intron (ENSMUSG00000024306.13, intron 21 of 23) protein_coding-intron (ENSMUSG00000024306.13, intron 20 of 22) 218332 ENSMUSG00000024306.13 ENSMUSG00000024306 ENSMUST00000234661 Ccdc178 protein_coding Interval_2561 chr1 40378748 40380018 + 0 NA Intergenic Intergenic 25531 ENSMUSG00000103230.1 ENSMUSG00000103230 ENSMUST00000192199 Gm17970 processed_pseudogene Interval_70459 chr17 10370228 10370586 + 0 NA Intergenic Intergenic 45805 ENSMUSG00000099384.6 ENSMUSG00000099384 ENSMUST00000188715 1700110C19Rik lincRNA Interval_128440 chr5 113329642 113330752 + 0 NA Intergenic Intergenic -5652 ENSMUSG00000105778.1 ENSMUSG00000105778 ENSMUST00000197062 Mir7229 miRNA Interval_36067 chr12 34937972 34938639 + 0 NA Intergenic Intergenic 43281 ENSMUSG00000077264.1 ENSMUSG00000077264 ENSMUST00000104076 Gm24429 snoRNA Interval_466 chr1 5985421 5985726 + 0 NA Intergenic Intergenic 64472 ENSMUSG00000103090.1 ENSMUSG00000103090 ENSMUST00000191956 Gm19214 processed_pseudogene Interval_127876 chr5 108485135 108485856 + 0 NA promoter-TSS (ENSMUSG00000033623.13) protein_coding-promoter-TSS (ENSMUSG00000033623.13) -725 ENSMUSG00000033623.13 ENSMUSG00000033623 ENSMUST00000151897 Pcgf3 protein_coding Interval_136999 chr6 65854166 65854954 + 0 NA intron (ENSMUSG00000029913.14, intron 2 of 5) protein_coding-intron (ENSMUSG00000029913.14, intron 3 of 10) 9716 ENSMUSG00000088832.1 ENSMUSG00000088832 ENSMUST00000158207 Gm23543 snRNA Interval_22742 chr11 14276563 14276764 + 0 NA Intergenic Intergenic -97622 ENSMUSG00000085452.1 ENSMUSG00000085452 ENSMUST00000126260 4930554G24Rik lincRNA Interval_78448 chr18 12904133 12904538 + 0 NA intron (ENSMUSG00000044252.18, intron 11 of 14) protein_coding-intron (ENSMUSG00000044252.18, intron 11 of 27) 5908 ENSMUSG00000080866.1 ENSMUSG00000080866 ENSMUST00000118252 Gm5687 processed_pseudogene Interval_67890 chr16 58727530 58728728 + 0 NA promoter-TSS (ENSMUSG00000022744.12) protein_coding-promoter-TSS (ENSMUSG00000022744.12) -4135 ENSMUSG00000022744.12 ENSMUSG00000022744 ENSMUST00000162249 Cldnd1 protein_coding Interval_127616 chr5 105807633 105809218 + 0 NA intron (ENSMUSG00000046079.16, intron 1 of 2) protein_coding-intron (ENSMUSG00000046079.16, intron 2 of 2) 10563 ENSMUSG00000084878.1 ENSMUSG00000084878 ENSMUST00000135958 Lrrc8dos antisense Interval_26663 chr11 59544075 59544559 + 0 NA intron (ENSMUSG00000032691.14, intron 2 of 3) protein_coding-intron (ENSMUSG00000032691.14, intron 3 of 10) 1561 ENSMUSG00000032691.14 ENSMUSG00000032691 ENSMUST00000149126 Nlrp3 protein_coding Interval_98567 chr2 153290882 153292782 + 0 NA intron (ENSMUSG00000027475.9, intron 1 of 8) protein_coding-intron (ENSMUSG00000027475.9, intron 1 of 8) 419 ENSMUSG00000027475.9 ENSMUSG00000027475 ENSMUST00000028977 Kif3b protein_coding Interval_120828 chr4 150889389 150890884 + 0 NA Intergenic Intergenic 19692 ENSMUSG00000028964.14 ENSMUSG00000028964 ENSMUST00000146184 Park7 protein_coding Interval_112789 chr4 45011718 45013044 + 0 NA promoter-TSS (ENSMUSG00000049657.9) protein_coding-promoter-TSS (ENSMUSG00000049657.9) 31 ENSMUSG00000049657.9 ENSMUSG00000049657 ENSMUST00000131991 Zbtb5 protein_coding Interval_16099 chr10 60728993 60729557 + 0 NA intron (ENSMUSG00000020100.15, intron 3 of 5) protein_coding-intron (ENSMUSG00000020100.15, intron 3 of 5) 23508 ENSMUSG00000020100.15 ENSMUSG00000020100 ENSMUST00000144989 Slc29a3 protein_coding Interval_59867 chr15 60341035 60341668 + 0 NA Intergenic Intergenic -44401 ENSMUSG00000115838.1 ENSMUSG00000115838 ENSMUST00000228640 Gm46507 processed_pseudogene Interval_98768 chr2 154825656 154826437 + 0 NA intron (ENSMUSG00000027593.15, intron 2 of 2) protein_coding-intron (ENSMUSG00000027593.15, intron 2 of 9) 34692 ENSMUSG00000027593.15 ENSMUSG00000027593 ENSMUST00000151578 Raly protein_coding Interval_135246 chr6 37809155 37809511 + 0 NA Intergenic Intergenic 3247 ENSMUSG00000080242.5 ENSMUSG00000080242 ENSMUST00000122373 Atp6v0c-ps2 processed_pseudogene Interval_137364 chr6 71715193 71716214 + 0 NA intron (ENSMUSG00000052852.8, intron 1 of 8) protein_coding-intron (ENSMUSG00000052852.8, intron 1 of 6) 7833 ENSMUSG00000052852.8 ENSMUSG00000052852 ENSMUST00000212631 Reep1 protein_coding Interval_80648 chr18 45215214 45215459 + 0 NA Intergenic Intergenic 16513 ENSMUSG00000118143.1 ENSMUSG00000118143 ENSMUST00000237199 Gm50124 processed_pseudogene Interval_50729 chr14 18639613 18640155 + 0 NA intron (ENSMUSG00000058317.12, intron 4 of 4) protein_coding-intron (ENSMUSG00000058317.12, intron 2 of 4) -94752 ENSMUSG00000114529.1 ENSMUSG00000114529 ENSMUST00000224515 Gm4939 processed_pseudogene Interval_69967 chr17 3569499 3571135 + 0 NA Intergenic Intergenic 12493 ENSMUSG00000116852.1 ENSMUSG00000116852 ENSMUST00000231344 1700102H20Rik lincRNA Interval_80894 chr18 49978732 49980289 + 0 NA promoter-TSS (ENSMUSG00000062210.13) protein_coding-promoter-TSS (ENSMUSG00000062210.13) 56797 ENSMUSG00000037416.13 ENSMUSG00000037416 ENSMUST00000181042 Dmxl1 protein_coding Interval_124074 chr5 38073517 38073913 + 0 NA intron (ENSMUSG00000029125.14, intron 1 of 3) protein_coding-intron (ENSMUSG00000029125.14, intron 1 of 10) 34433 ENSMUSG00000029125.14 ENSMUSG00000029125 ENSMUST00000141286 Stx18 protein_coding Interval_134276 chr6 24390276 24390882 + 0 NA Intergenic Intergenic 124488 ENSMUSG00000046192.4 ENSMUSG00000046192 ENSMUST00000052277 Iqub protein_coding Interval_58449 chr15 34613373 34614049 + 0 NA intron (ENSMUSG00000038879.8, intron 3 of 4) protein_coding-intron (ENSMUSG00000038879.8, intron 4 of 10) -30940 ENSMUSG00000038879.8 ENSMUSG00000038879 ENSMUST00000227126 Nipal2 protein_coding Interval_158931 chr8 88037278 88037935 + 0 NA Intergenic Intergenic 33204 ENSMUSG00000110719.1 ENSMUSG00000110719 ENSMUST00000212350 Gm2716 unitary_pseudogene Interval_161958 chr8 124044141 124044451 + 0 NA intron (ENSMUSG00000031976.14, intron 8 of 9) protein_coding-intron (ENSMUSG00000031976.14, intron 7 of 8) 4116 ENSMUSG00000110704.1 ENSMUSG00000110704 ENSMUST00000212460 Gm45732 antisense Interval_93922 chr2 79367633 79369561 + 0 NA intron (ENSMUSG00000075256.9, intron 2 of 3) protein_coding-intron (ENSMUSG00000075256.9, intron 3 of 12) 2268 ENSMUSG00000075256.9 ENSMUSG00000075256 ENSMUST00000152413 Cerkl protein_coding Interval_107288 chr3 105459253 105459760 + 0 NA exon (ENSMUSG00000040896.16, exon 1 of 7) protein_coding-exon (ENSMUSG00000040896.16, exon 1 of 7) -7779 ENSMUSG00000074346.6 ENSMUSG00000074346 ENSMUST00000130683 Kcnd3os antisense Interval_3667 chr1 60542555 60544136 + 0 NA intron (ENSMUSG00000026014.15, intron 1 of 3) protein_coding-intron (ENSMUSG00000026014.15, intron 1 of 15) 6325 ENSMUSG00000084400.1 ENSMUSG00000084400 ENSMUST00000117433 Gm11576 processed_pseudogene Interval_157253 chr8 68554765 68555019 + 0 NA intron (ENSMUSG00000036356.15, intron 1 of 1) protein_coding-intron (ENSMUSG00000036356.15, intron 3 of 9) -25005 ENSMUSG00000036356.15 ENSMUSG00000036356 ENSMUST00000139141 Csgalnact1 protein_coding Interval_151384 chr7 121996056 121996511 + 0 NA TTS (ENSMUSG00000030872.14) protein_coding-TTS (ENSMUSG00000030872.14) 14522 ENSMUSG00000108511.1 ENSMUSG00000108511 ENSMUST00000206578 Gm44987 antisense Interval_107562 chr3 108508016 108508221 + 0 NA intron (ENSMUSG00000040412.17, intron 1 of 1) protein_coding-intron (ENSMUSG00000040412.17, intron 1 of 20) 10000 ENSMUSG00000080673.1 ENSMUSG00000080673 ENSMUST00000117023 Gm23336 snRNA Interval_147491 chr7 67707219 67707453 + 0 NA intron (ENSMUSG00000030555.16, intron 3 of 6) protein_coding-intron (ENSMUSG00000030555.16, intron 8 of 11) -26033 ENSMUSG00000109115.1 ENSMUSG00000109115 ENSMUST00000207774 Gm44669 TEC Interval_127275 chr5 102052650 102053378 + 0 NA intron (ENSMUSG00000043940.15, intron 1 of 15) protein_coding-intron (ENSMUSG00000043940.15, intron 1 of 66) 5055 ENSMUSG00000105761.1 ENSMUSG00000105761 ENSMUST00000197792 Gm43787 TEC Interval_148698 chr7 84247089 84249621 + 0 NA exon (ENSMUSG00000015709.9, exon 19 of 19) protein_coding-exon (ENSMUSG00000015709.9, exon 19 of 19) -15436 ENSMUSG00000109091.1 ENSMUSG00000109091 ENSMUST00000207963 Gm44827 lincRNA Interval_8151 chr1 136104856 136106272 + 0 NA exon (ENSMUSG00000026407.17, exon 30 of 44) protein_coding-exon (ENSMUSG00000026407.17, exon 30 of 44) 14258 ENSMUSG00000102717.1 ENSMUSG00000102717 ENSMUST00000194155 Gm37759 antisense Interval_118994 chr4 134898403 134899499 + 0 NA intron (ENSMUSG00000028822.11, intron 6 of 6) protein_coding-intron (ENSMUSG00000028822.11, intron 6 of 6) 16064 ENSMUSG00000028822.11 ENSMUSG00000028822 ENSMUST00000105863 Tmem50a protein_coding Interval_15841 chr10 58342591 58343490 + 0 NA intron (ENSMUSG00000019920.18, intron 1 of 9) protein_coding-intron (ENSMUSG00000019920.18, intron 1 of 9) 6564 ENSMUSG00000070214.1 ENSMUSG00000070214 ENSMUST00000093703 Gm23058 snRNA Interval_105949 chr3 90253819 90255163 + 0 NA TTS (ENSMUSG00000052310.9) protein_coding-TTS (ENSMUSG00000052310.9) -2804 ENSMUSG00000027936.18 ENSMUSG00000027936 ENSMUST00000149897 Crtc2 protein_coding Interval_114005 chr4 62392574 62393576 + 0 NA exon (ENSMUSG00000066149.11, exon 4 of 5) protein_coding-exon (ENSMUSG00000066149.11, exon 4 of 5) 7574 ENSMUSG00000066150.12 ENSMUSG00000066150 ENSMUST00000122092 Slc31a1 protein_coding Interval_143500 chr7 10808411 10810245 + 0 NA Intergenic Intergenic -1452 ENSMUSG00000110402.1 ENSMUSG00000110402 ENSMUST00000210880 Gm7203 unprocessed_pseudogene Interval_156560 chr8 51752291 51752766 + 0 NA Intergenic Intergenic -127035 ENSMUSG00000109897.1 ENSMUSG00000109897 ENSMUST00000211573 Gm6458 processed_pseudogene Interval_1298 chr1 19331664 19332492 + 0 NA exon (ENSMUSG00000100204.1, exon 1 of 1) processed_pseudogene-exon (ENSMUSG00000100204.1, exon 1 of 1) 1139 ENSMUSG00000100204.1 ENSMUSG00000100204 ENSMUST00000188428 Gm4849 processed_pseudogene Interval_155926 chr8 41084759 41085207 + 0 NA intron (ENSMUSG00000045636.16, intron 1 of 1) protein_coding-intron (ENSMUSG00000045636.16, intron 1 of 13) 31873 ENSMUSG00000085672.1 ENSMUSG00000085672 ENSMUST00000125903 Gm16193 antisense Interval_163744 chr9 25176453 25176694 + 0 NA Intergenic Intergenic 24459 ENSMUSG00000100002.2 ENSMUSG00000100002 ENSMUST00000186170 Gm29642 lincRNA Interval_151700 chr7 126145525 126148009 + 0 NA intron (ENSMUSG00000000131.15, intron 5 of 20) protein_coding-intron (ENSMUSG00000000131.15, intron 8 of 23) -18878 ENSMUSG00000090559.1 ENSMUSG00000090559 ENSMUST00000165729 Gm17137 transcribed_processed_pseudogene Interval_93494 chr2 73528586 73529944 + 0 NA intron (ENSMUSG00000075284.10, intron 1 of 3) protein_coding-intron (ENSMUSG00000075284.10, intron 1 of 7) 51073 ENSMUSG00000027107.3 ENSMUSG00000027107 ENSMUST00000028515 Chrna1 protein_coding Interval_174811 chrX 167229379 167229789 + 0 NA Intergenic Intergenic -20435 ENSMUSG00000049775.16 ENSMUSG00000049775 ENSMUST00000112175 Tmsb4x protein_coding Interval_142044 chr6 136720112 136720862 + 0 NA intron (ENSMUSG00000042638.14, intron 17 of 25) protein_coding-intron (ENSMUSG00000042638.14, intron 18 of 26) -25204 ENSMUSG00000107850.1 ENSMUSG00000107850 ENSMUST00000203395 Gm4714 processed_pseudogene Interval_135172 chr6 37211213 37211496 + 0 NA intron (ENSMUSG00000038665.15, intron 1 of 32) protein_coding-intron (ENSMUSG00000038665.15, intron 2 of 32) 88830 ENSMUSG00000038665.15 ENSMUSG00000038665 ENSMUST00000136457 Dgki protein_coding Interval_49659 chr13 113842239 113842520 + 0 NA intron (ENSMUSG00000042348.10, intron 1 of 3) protein_coding-intron (ENSMUSG00000042348.10, intron 1 of 4) 47786 ENSMUSG00000042348.10 ENSMUSG00000042348 ENSMUST00000224068 Arl15 protein_coding Interval_13231 chr10 13323377 13324698 + 0 NA intron (ENSMUSG00000062866.16, intron 1 of 12) protein_coding-intron (ENSMUSG00000062866.16, intron 1 of 12) 64694 ENSMUSG00000062866.16 ENSMUSG00000062866 ENSMUST00000154265 Phactr2 protein_coding Interval_172750 chrX 48291070 48292055 + 0 NA Intergenic Intergenic -8017 ENSMUSG00000089443.1 ENSMUSG00000089443 ENSMUST00000158818 Gm22528 snRNA Interval_114608 chr4 83107976 83109026 + 0 NA Intergenic Intergenic -13040 ENSMUSG00000082637.2 ENSMUSG00000082637 ENSMUST00000119568 Gm11248 processed_pseudogene Interval_122116 chr5 17275333 17275785 + 0 NA Intergenic Intergenic -47625 ENSMUSG00000091273.1 ENSMUSG00000091273 ENSMUST00000166114 Gm6673 unprocessed_pseudogene Interval_53833 chr14 62457038 62458137 + 0 NA Intergenic Intergenic -1301 ENSMUSG00000021933.11 ENSMUSG00000021933 ENSMUST00000128573 Gucy1b2 protein_coding Interval_97411 chr2 135904026 135904300 + 0 NA intron (ENSMUSG00000039943.16, intron 1 of 7) protein_coding-intron (ENSMUSG00000039943.16, intron 2 of 35) -91236 ENSMUSG00000086928.1 ENSMUSG00000086928 ENSMUST00000140949 Gm14210 lincRNA Interval_100267 chr2 168058420 168059674 + 0 NA Intergenic Intergenic 5850 ENSMUSG00000092849.1 ENSMUSG00000092849 ENSMUST00000175108 Gm24327 miRNA Interval_69872 chr16 97778620 97779035 + 0 NA Intergenic Intergenic -15040 ENSMUSG00000005251.15 ENSMUSG00000005251 ENSMUST00000019386 Ripk4 protein_coding Interval_123506 chr5 33033147 33035220 + 0 NA Intergenic Intergenic 15305 ENSMUSG00000018965.11 ENSMUSG00000018965 ENSMUST00000136667 Ywhah protein_coding Interval_12457 chr1 193624514 193625550 + 0 NA Intergenic Intergenic -114858 ENSMUSG00000097850.2 ENSMUSG00000097850 ENSMUST00000180420 Mir205hg lincRNA Interval_43050 chr13 23491539 23492867 + 0 NA Intergenic Intergenic -3373 ENSMUSG00000053216.15 ENSMUSG00000053216 ENSMUST00000110432 Btn2a2 protein_coding Interval_126365 chr5 87299480 87299661 + 0 NA intron (ENSMUSG00000105897.2, intron 2 of 8) unprocessed_pseudogene-intron (ENSMUSG00000105897.2, intron 2 of 8) 12247 ENSMUSG00000105897.2 ENSMUSG00000105897 ENSMUST00000198590 Gm7646 unprocessed_pseudogene Interval_49579 chr13 113155842 113156090 + 0 NA Intergenic Intergenic -4516 ENSMUSG00000116741.1 ENSMUSG00000116741 ENSMUST00000232170 Gm49564 unprocessed_pseudogene Interval_130817 chr5 130915705 130915973 + 0 NA intron (ENSMUSG00000034040.16, intron 6 of 10) protein_coding-intron (ENSMUSG00000034040.16, intron 6 of 10) -17226 ENSMUSG00000107207.1 ENSMUSG00000107207 ENSMUST00000201486 Gm42897 TEC Interval_64525 chr16 13060899 13062203 + 0 NA Intergenic Intergenic -70840 ENSMUSG00000022545.13 ENSMUSG00000022545 ENSMUST00000156393 Ercc4 protein_coding Interval_20189 chr10 115556486 115557402 + 0 NA intron (ENSMUSG00000020140.15, intron 1 of 16) protein_coding-intron (ENSMUSG00000020140.15, intron 1 of 17) -13042 ENSMUSG00000092210.1 ENSMUSG00000092210 ENSMUST00000173620 A930009A15Rik protein_coding Interval_166220 chr9 57568591 57569110 + 0 NA intron (ENSMUSG00000040188.10, intron 1 of 2) protein_coding-intron (ENSMUSG00000040188.10, intron 1 of 8) -13000 ENSMUSG00000040188.10 ENSMUSG00000040188 ENSMUST00000216667 Scamp2 protein_coding Interval_72176 chr17 28431587 28433096 + 0 NA intron (ENSMUSG00000024222.17, intron 3 of 10) protein_coding-intron (ENSMUSG00000024222.17, intron 3 of 10) -5911 ENSMUSG00000117313.1 ENSMUSG00000117313 ENSMUST00000233201 Gm49838 sense_intronic Interval_31431 chr11 100619033 100620260 + 0 NA promoter-TSS (ENSMUSG00000017837.12) protein_coding-promoter-TSS (ENSMUSG00000017837.12) -15 ENSMUSG00000014195.16 ENSMUSG00000014195 ENSMUST00000132886 Dnajc7 protein_coding Interval_129542 chr5 120812135 120813040 + 0 NA promoter-TSS (ENSMUSG00000029605.16) polymorphic_pseudogene-promoter-TSS (ENSMUSG00000029605.16) -51 ENSMUSG00000029605.16 ENSMUSG00000029605 ENSMUST00000183291 Oas1b polymorphic_pseudogene Interval_162914 chr9 12935048 12935250 + 0 NA Intergenic Intergenic 69716 ENSMUSG00000098228.1 ENSMUSG00000098228 ENSMUST00000182425 Gm21070 processed_pseudogene Interval_36592 chr12 51028940 51029351 + 0 NA intron (ENSMUSG00000111986.1, intron 2 of 4) lincRNA-intron (ENSMUSG00000111986.1, intron 2 of 4) 23987 ENSMUSG00000111986.1 ENSMUSG00000111986 ENSMUST00000218606 1700008C04Rik lincRNA Interval_34942 chr12 14560664 14560903 + 0 NA Intergenic Intergenic 54196 ENSMUSG00000075760.1 ENSMUSG00000075760 ENSMUST00000101814 Gm25414 snRNA Interval_102243 chr3 19847361 19847566 + 0 NA Intergenic Intergenic -47423 ENSMUSG00000048106.6 ENSMUSG00000048106 ENSMUST00000059704 4632415L05Rik transcribed_unprocessed_pseudogene Interval_154844 chr8 24326750 24327886 + 0 NA Intergenic Intergenic 32118 ENSMUSG00000109299.1 ENSMUSG00000109299 ENSMUST00000207438 Gm45164 lincRNA Interval_34363 chr12 3618530 3618946 + 0 NA intron (ENSMUSG00000071454.13, intron 5 of 17) protein_coding-intron (ENSMUSG00000071454.13, intron 5 of 17) 46268 ENSMUSG00000071454.13 ENSMUSG00000071454 ENSMUST00000174293 Dtnb protein_coding Interval_129977 chr5 123430223 123430570 + 0 NA intron (ENSMUSG00000038342.15, intron 1 of 8) protein_coding-intron (ENSMUSG00000038342.15, intron 1 of 16) -21062 ENSMUSG00000038342.15 ENSMUSG00000038342 ENSMUST00000199458 Mlxip protein_coding Interval_41087 chr12 111087906 111089351 + 0 NA intron (ENSMUSG00000037896.17, intron 3 of 11) protein_coding-intron (ENSMUSG00000037896.17, intron 3 of 11) -2572 ENSMUSG00000113200.1 ENSMUSG00000113200 ENSMUST00000221105 Gm48632 TEC Interval_1959 chr1 34929223 34930900 + 0 NA exon (ENSMUSG00000103716.1, exon 1 of 1) processed_pseudogene-exon (ENSMUSG00000103716.1, exon 1 of 1) 1552 ENSMUSG00000103716.1 ENSMUSG00000103716 ENSMUST00000193847 Gm19430 processed_pseudogene Interval_104032 chr3 57555672 57556140 + 0 NA intron (ENSMUSG00000027803.14, intron 2 of 6) protein_coding-intron (ENSMUSG00000027803.14, intron 2 of 6) 20004 ENSMUSG00000027803.14 ENSMUSG00000027803 ENSMUST00000120977 Wwtr1 protein_coding Interval_76886 chr17 84736241 84737691 + 0 NA intron (ENSMUSG00000024120.12, intron 4 of 5) protein_coding-intron (ENSMUSG00000024120.12, intron 25 of 37) -5782 ENSMUSG00000024120.12 ENSMUSG00000024120 ENSMUST00000159222 Lrpprc protein_coding Interval_81283 chr18 57373204 57374353 + 0 NA promoter-TSS (ENSMUSG00000024594.9) protein_coding-promoter-TSS (ENSMUSG00000024594.9) 18888 ENSMUSG00000024594.9 ENSMUSG00000024594 ENSMUST00000236709 Prrc1 protein_coding Interval_86637 chr19 42201202 42202483 + 0 NA exon (ENSMUSG00000018822.7, exon 1 of 3) protein_coding-exon (ENSMUSG00000018822.7, exon 1 of 3) 410 ENSMUSG00000018822.7 ENSMUSG00000018822 ENSMUST00000018966 Sfrp5 protein_coding Interval_77769 chr18 3381144 3381356 + 0 NA Intergenic Intergenic -1982 ENSMUSG00000024231.15 ENSMUSG00000024231 ENSMUST00000159443 Cul2 protein_coding Interval_127939 chr5 109601174 109601754 + 0 NA Intergenic Intergenic 2385 ENSMUSG00000098393.1 ENSMUSG00000098393 ENSMUST00000184380 Gm28000 misc_RNA Interval_136631 chr6 56831770 56832818 + 0 NA exon (ENSMUSG00000029781.7, exon 1 of 10) protein_coding-exon (ENSMUSG00000029781.7, exon 1 of 10) -17039 ENSMUSG00000029781.7 ENSMUSG00000029781 ENSMUST00000147159 Fkbp9 protein_coding Interval_122044 chr5 14539495 14540817 + 0 NA promoter-TSS (ENSMUSG00000097976.1) antisense-promoter-TSS (ENSMUSG00000097976.1) -304 ENSMUSG00000097976.1 ENSMUSG00000097976 ENSMUST00000182496 Gm26918 antisense Interval_33165 chr11 114867028 114867449 + 0 NA intron (ENSMUSG00000051043.16, intron 3 of 3) protein_coding-intron (ENSMUSG00000051043.16, intron 3 of 3) 15698 ENSMUSG00000051043.16 ENSMUSG00000051043 ENSMUST00000152314 Gprc5c protein_coding Interval_125921 chr5 75814247 75814638 + 0 NA Intergenic Intergenic 21203 ENSMUSG00000107061.1 ENSMUSG00000107061 ENSMUST00000201551 Gm19590 lincRNA Interval_161246 chr8 119169598 119170316 + 0 NA intron (ENSMUSG00000031841.19, intron 1 of 3) protein_coding-intron (ENSMUSG00000031841.19, intron 7 of 13) 18492 ENSMUSG00000031841.19 ENSMUSG00000031841 ENSMUST00000151842 Cdh13 protein_coding Interval_82053 chr18 67381627 67381949 + 0 NA Intergenic Intergenic -10479 ENSMUSG00000001473.7 ENSMUSG00000001473 ENSMUST00000236667 Tubb6 protein_coding Interval_103966 chr3 55609855 55610955 + 0 NA Intergenic Intergenic -27675 ENSMUSG00000106334.1 ENSMUSG00000106334 ENSMUST00000198856 Gm43549 lincRNA Interval_152045 chr7 128539956 128540333 + 0 NA TTS (ENSMUSG00000108614.1) TEC-TTS (ENSMUSG00000108614.1) 1212 ENSMUSG00000108614.1 ENSMUSG00000108614 ENSMUST00000206512 2610306O10Rik TEC Interval_158176 chr8 79545424 79546965 + 0 NA Intergenic Intergenic 4554 ENSMUSG00000097975.1 ENSMUSG00000097975 ENSMUST00000182695 Gm8079 processed_pseudogene Interval_141133 chr6 125180429 125180901 + 0 NA intron (ENSMUSG00000038252.13, intron 10 of 31) protein_coding-intron (ENSMUSG00000038252.13, intron 10 of 31) -3927 ENSMUSG00000038252.13 ENSMUSG00000038252 ENSMUST00000189959 Ncapd2 protein_coding Interval_141226 chr6 125876557 125876837 + 0 NA intron (ENSMUSG00000038115.16, intron 4 of 5) protein_coding-intron (ENSMUSG00000038115.16, intron 13 of 15) -7718 ENSMUSG00000088959.1 ENSMUSG00000088959 ENSMUST00000158334 Gm24947 snRNA Interval_118270 chr4 129959403 129960926 + 0 NA promoter-TSS (ENSMUSG00000085389.7) lincRNA-promoter-TSS (ENSMUSG00000085389.7) -210 ENSMUSG00000085389.7 ENSMUSG00000085389 ENSMUST00000139884 1700003M07Rik lincRNA Interval_31817 chr11 103114752 103117461 + 0 NA promoter-TSS (ENSMUSG00000048878.6) protein_coding-promoter-TSS (ENSMUSG00000048878.6) -125 ENSMUSG00000048878.6 ENSMUSG00000048878 ENSMUST00000053063 Hexim1 protein_coding Interval_125759 chr5 73931214 73932431 + 0 NA Intergenic Intergenic -14559 ENSMUSG00000106968.1 ENSMUSG00000106968 ENSMUST00000202711 C78283 lincRNA Interval_127452 chr5 104046197 104047426 + 0 NA promoter-TSS (ENSMUSG00000029310.13) protein_coding-promoter-TSS (ENSMUSG00000029310.13) 285 ENSMUSG00000029310.13 ENSMUSG00000029310 ENSMUST00000148261 Nudt9 protein_coding Interval_123394 chr5 32169775 32170053 + 0 NA Intergenic Intergenic -5185 ENSMUSG00000096091.1 ENSMUSG00000096091 ENSMUST00000178449 Gm26335 snRNA Interval_54676 chr14 73186569 73189255 + 0 NA promoter-TSS (ENSMUSG00000090706.1) antisense-promoter-TSS (ENSMUSG00000090706.1) -591 ENSMUSG00000090706.1 ENSMUSG00000090706 ENSMUST00000168470 Gm17233 antisense Interval_140886 chr6 122595560 122596080 + 0 NA TTS (ENSMUSG00000040613.14) protein_coding-TTS (ENSMUSG00000040613.14) 4618 ENSMUSG00000040613.14 ENSMUSG00000040613 ENSMUST00000204035 Apobec1 protein_coding Interval_9487 chr1 157628808 157629508 + 0 NA Intergenic Intergenic -7022 ENSMUSG00000103962.1 ENSMUSG00000103962 ENSMUST00000193203 Gm38213 processed_pseudogene Interval_23658 chr11 24163451 24165176 + 0 NA exon (ENSMUSG00000000861.15, exon 4 of 5) protein_coding-exon (ENSMUSG00000000861.15, exon 4 of 5) 8468 ENSMUSG00000085516.1 ENSMUSG00000085516 ENSMUST00000146717 4930538E20Rik antisense Interval_121050 chr4 152440674 152442037 + 0 NA intron (ENSMUSG00000028931.12, intron 1 of 16) protein_coding-intron (ENSMUSG00000028931.12, intron 1 of 14) 30555 ENSMUSG00000090057.1 ENSMUSG00000090057 ENSMUST00000161416 Gm16333 antisense Interval_60365 chr15 73186699 73187261 + 0 NA Intergenic Intergenic -9133 ENSMUSG00000036698.11 ENSMUSG00000036698 ENSMUST00000230464 Ago2 protein_coding Interval_53391 chr14 56864814 56866159 + 0 NA promoter-TSS (ENSMUSG00000114500.1) processed_pseudogene-promoter-TSS (ENSMUSG00000114500.1) 73 ENSMUSG00000114500.1 ENSMUSG00000114500 ENSMUST00000224747 Gm8983 processed_pseudogene Interval_144642 chr7 27302094 27302674 + 0 NA Intergenic Intergenic -29992 ENSMUSG00000083622.1 ENSMUSG00000083622 ENSMUST00000122093 Gm15570 processed_pseudogene Interval_151112 chr7 118610498 118610709 + 0 NA intron (ENSMUSG00000030650.18, intron 1 of 20) protein_coding-intron (ENSMUSG00000030650.18, intron 2 of 21) -11911 ENSMUSG00000030650.18 ENSMUSG00000030650 ENSMUST00000057320 Tmc5 protein_coding Interval_135226 chr6 37657596 37658780 + 0 NA Intergenic Intergenic 29007 ENSMUSG00000107035.1 ENSMUSG00000107035 ENSMUST00000201305 Ybx1-ps2 processed_pseudogene Interval_139910 chr6 112633592 112633963 + 0 NA intron (ENSMUSG00000030254.16, intron 11 of 11) protein_coding-intron (ENSMUSG00000030254.16, intron 12 of 13) 28233 ENSMUSG00000029633.9 ENSMUSG00000029633 ENSMUST00000121490 Gm5578 processed_pseudogene Interval_15267 chr10 43947573 43948110 + 0 NA promoter-TSS (ENSMUSG00000019864.14) protein_coding-promoter-TSS (ENSMUSG00000019864.14) -55 ENSMUSG00000019864.14 ENSMUSG00000019864 ENSMUST00000214453 Rtn4ip1 protein_coding Interval_76504 chr17 80631037 80631885 + 0 NA intron (ENSMUSG00000024242.15, intron 13 of 32) protein_coding-intron (ENSMUSG00000024242.15, intron 13 of 33) -6475 ENSMUSG00000024242.15 ENSMUSG00000024242 ENSMUST00000234486 Map4k3 protein_coding Interval_6444 chr1 108994488 108994925 + 0 NA Intergenic Intergenic 4054 ENSMUSG00000100831.1 ENSMUSG00000100831 ENSMUST00000188261 Gm17847 processed_pseudogene Interval_91341 chr2 37917628 37918746 + 0 NA intron (ENSMUSG00000035392.17, intron 12 of 18) protein_coding-intron (ENSMUSG00000035392.17, intron 13 of 21) 100980 ENSMUSG00000107586.1 ENSMUSG00000107586 ENSMUST00000204461 Gm44283 TEC Interval_23531 chr11 23166316 23166583 + 0 NA TTS (ENSMUSG00000086366.1) lincRNA-TTS (ENSMUSG00000086366.1) 6457 ENSMUSG00000088495.1 ENSMUSG00000088495 ENSMUST00000157870 Gm24398 snoRNA Interval_29445 chr11 84050696 84051372 + 0 NA intron (ENSMUSG00000018648.15, intron 1 of 2) protein_coding-intron (ENSMUSG00000018648.15, intron 2 of 3) 17545 ENSMUSG00000018648.15 ENSMUSG00000018648 ENSMUST00000138208 Dusp14 protein_coding Interval_123974 chr5 36955269 36955722 + 0 NA TTS (ENSMUSG00000029120.10) protein_coding-TTS (ENSMUSG00000029120.10) 21461 ENSMUSG00000039474.13 ENSMUSG00000039474 ENSMUST00000167937 Wfs1 protein_coding Interval_1787 chr1 33784172 33784674 + 0 NA promoter-TSS (ENSMUSG00000042197.13) protein_coding-promoter-TSS (ENSMUSG00000042197.13) -26696 ENSMUSG00000042215.8 ENSMUSG00000042215 ENSMUST00000189741 Bag2 protein_coding Interval_81157 chr18 55067158 55067496 + 0 NA intron (ENSMUSG00000096948.2, intron 1 of 1) antisense-intron (ENSMUSG00000096948.2, intron 4 of 4) 18330 ENSMUSG00000084521.1 ENSMUSG00000084521 ENSMUST00000122572 Gm24183 snoRNA Interval_91882 chr2 50988300 50991044 + 0 NA Intergenic Intergenic 79988 ENSMUSG00000083270.1 ENSMUSG00000083270 ENSMUST00000119159 Gm13498 processed_pseudogene Interval_22435 chr11 10050968 10052498 + 0 NA Intergenic Intergenic -187604 ENSMUSG00000082312.1 ENSMUSG00000082312 ENSMUST00000117538 Gm11996 processed_pseudogene Interval_115517 chr4 100043035 100043410 + 0 NA Intergenic Intergenic -9298 ENSMUSG00000085142.1 ENSMUSG00000085142 ENSMUST00000123258 Gm12702 lincRNA Interval_174075 chrX 134371119 134371495 + 0 NA Intergenic Intergenic -33321 ENSMUSG00000000223.13 ENSMUSG00000000223 ENSMUST00000000228 Drp2 protein_coding Interval_95029 chr2 103303777 103304770 + 0 NA promoter-TSS (ENSMUSG00000012350.15) protein_coding-promoter-TSS (ENSMUSG00000012350.15) -1353 ENSMUSG00000012350.15 ENSMUSG00000012350 ENSMUST00000128546 Ehf protein_coding Interval_132027 chr5 142370573 142371712 + 0 NA Intergenic Intergenic -30355 ENSMUSG00000056493.9 ENSMUSG00000056493 ENSMUST00000072837 Foxk1 protein_coding Interval_32786 chr11 110599995 110600198 + 0 NA Intergenic Intergenic 55589 ENSMUSG00000085985.1 ENSMUSG00000085985 ENSMUST00000144689 Gm11682 lincRNA Interval_133137 chr5 150104058 150104810 + 0 NA Intergenic Intergenic -21639 ENSMUSG00000107384.1 ENSMUSG00000107384 ENSMUST00000202037 Gm42557 antisense Interval_121886 chr5 9153179 9153719 + 0 NA promoter-TSS (ENSMUSG00000042508.16) protein_coding-promoter-TSS (ENSMUSG00000042508.16) -2284 ENSMUSG00000079659.5 ENSMUSG00000079659 ENSMUST00000200542 Tmem243 protein_coding Interval_19397 chr10 98943235 98944245 + 0 NA intron (ENSMUSG00000019943.10, intron 1 of 8) protein_coding-intron (ENSMUSG00000019943.10, intron 1 of 20) -47140 ENSMUSG00000019943.10 ENSMUSG00000019943 ENSMUST00000218419 Atp2b1 protein_coding Interval_22856 chr11 16797639 16797921 + 0 NA intron (ENSMUSG00000020122.16, intron 1 of 15) protein_coding-intron (ENSMUSG00000020122.16, intron 1 of 27) 32922 ENSMUSG00000085091.1 ENSMUSG00000085091 ENSMUST00000150329 Egfros antisense Interval_86324 chr19 38757973 38758539 + 0 NA intron (ENSMUSG00000024998.17, intron 11 of 21) protein_coding-intron (ENSMUSG00000024998.17, intron 21 of 31) -5611 ENSMUSG00000101079.1 ENSMUSG00000101079 ENSMUST00000186584 Gm28991 antisense Interval_64140 chr16 8692135 8692363 + 0 NA intron (ENSMUSG00000022710.17, intron 28 of 31) protein_coding-intron (ENSMUSG00000022710.17, intron 27 of 30) 6283 ENSMUSG00000022710.17 ENSMUSG00000022710 ENSMUST00000159509 Usp7 protein_coding Interval_2591 chr1 41013826 41014471 + 0 NA Intergenic Intergenic -149916 ENSMUSG00000094136.2 ENSMUSG00000094136 ENSMUST00000178542 Gm5973 processed_pseudogene Interval_86489 chr19 41047782 41048317 + 0 NA intron (ENSMUSG00000025014.13, intron 8 of 10) protein_coding-intron (ENSMUSG00000025014.13, intron 8 of 11) 18664 ENSMUSG00000025014.13 ENSMUSG00000025014 ENSMUST00000237959 Dntt protein_coding Interval_119783 chr4 139964564 139965201 + 0 NA exon (ENSMUSG00000078234.6, exon 1 of 1) protein_coding-exon (ENSMUSG00000078234.6, exon 1 of 1) 2738 ENSMUSG00000089294.1 ENSMUSG00000089294 ENSMUST00000158669 Mir2139 miRNA Interval_161138 chr8 117720097 117720784 + 0 NA promoter-TSS (ENSMUSG00000031844.8) protein_coding-promoter-TSS (ENSMUSG00000031844.8) -496 ENSMUSG00000031844.8 ENSMUSG00000031844 ENSMUST00000212998 Hsd17b2 protein_coding Interval_30359 chr11 93856181 93856985 + 0 NA Intergenic Intergenic 19560 ENSMUSG00000054079.12 ENSMUSG00000054079 ENSMUST00000134807 Utp18 protein_coding Interval_103410 chr3 41355799 41356319 + 0 NA intron (ENSMUSG00000105297.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000105297.1, intron 1 of 2) 1912 ENSMUSG00000105297.1 ENSMUSG00000105297 ENSMUST00000196142 1700052H01Rik lincRNA Interval_166242 chr9 57744640 57745192 + 0 NA intron (ENSMUSG00000038957.13, intron 5 of 5) protein_coding-intron (ENSMUSG00000038957.13, intron 6 of 6) 20273 ENSMUSG00000032316.8 ENSMUSG00000032316 ENSMUST00000215158 Clk3 protein_coding Interval_150131 chr7 107215410 107217484 + 0 NA Intergenic Intergenic 7002 ENSMUSG00000073894.1 ENSMUSG00000073894 ENSMUST00000098135 Rbmxl2 protein_coding Interval_69518 chr16 94003112 94004099 + 0 NA intron (ENSMUSG00000047109.13, intron 1 of 2) protein_coding-intron (ENSMUSG00000047109.13, intron 1 of 2) -7836 ENSMUSG00000116947.1 ENSMUSG00000116947 ENSMUST00000231382 2410003I16Rik lincRNA Interval_133726 chr6 10090774 10092715 + 0 NA Intergenic Intergenic 81110 ENSMUSG00000107459.1 ENSMUSG00000107459 ENSMUST00000203122 Gm5110 processed_pseudogene Interval_12505 chr1 194598985 194599240 + 0 NA Intergenic Intergenic -19106 ENSMUSG00000026640.12 ENSMUSG00000026640 ENSMUST00000124785 Plxna2 protein_coding Interval_71510 chr17 24227650 24228362 + 0 NA intron (ENSMUSG00000072082.7, intron 1 of 3) protein_coding-intron (ENSMUSG00000072082.7, intron 13 of 16) 6598 ENSMUSG00000093270.1 ENSMUSG00000093270 ENSMUST00000175529 Mir5134 miRNA Interval_24485 chr11 33607435 33608553 + 0 NA promoter-TSS (ENSMUSG00000073052.4) lincRNA-promoter-TSS (ENSMUSG00000073052.4) 14 ENSMUSG00000073052.4 ENSMUSG00000073052 ENSMUST00000238565 D130052B06Rik lincRNA Interval_124948 chr5 61600745 61601634 + 0 NA Intergenic Intergenic 1849 ENSMUSG00000105675.1 ENSMUSG00000105675 ENSMUST00000195981 Gm43383 processed_pseudogene Interval_11211 chr1 180208446 180208657 + 0 NA intron (ENSMUSG00000104520.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000104520.1, intron 1 of 2) 3850 ENSMUSG00000104520.1 ENSMUSG00000104520 ENSMUST00000193705 Gm37336 lincRNA Interval_121411 chr4 155609926 155610148 + 0 NA promoter-TSS (ENSMUSG00000042202.15) protein_coding-promoter-TSS (ENSMUSG00000042202.15) -166 ENSMUSG00000042202.15 ENSMUSG00000042202 ENSMUST00000151425 Slc35e2 protein_coding Interval_149344 chr7 97598428 97599250 + 0 NA intron (ENSMUSG00000086433.1, intron 2 of 2) protein_coding-intron (ENSMUSG00000035623.14, intron 1 of 15) -3398 ENSMUSG00000108442.1 ENSMUSG00000108442 ENSMUST00000205636 Rpl15-ps5 processed_pseudogene Interval_10618 chr1 172243755 172245038 + 0 NA exon (ENSMUSG00000007107.6, exon 10 of 23) protein_coding-exon (ENSMUSG00000007107.6, exon 10 of 23) 7105 ENSMUSG00000103617.1 ENSMUSG00000103617 ENSMUST00000191616 Gm37950 antisense Interval_142260 chr6 140192726 140194015 + 0 NA Intergenic Intergenic -26725 ENSMUSG00000089558.1 ENSMUSG00000089558 ENSMUST00000158933 Gm24174 rRNA Interval_19137 chr10 94976242 94976810 + 0 NA Intergenic Intergenic 22916 ENSMUSG00000112277.1 ENSMUSG00000112277 ENSMUST00000218192 Gm48867 lincRNA Interval_44720 chr13 47747628 47748127 + 0 NA Intergenic Intergenic 80327 ENSMUSG00000114509.1 ENSMUSG00000114509 ENSMUST00000223996 4930471G24Rik lincRNA Interval_14743 chr10 39533015 39535048 + 0 NA intron (ENSMUSG00000019843.14, intron 11 of 12) protein_coding-intron (ENSMUSG00000019843.14, intron 12 of 13) 24031 ENSMUSG00000087014.1 ENSMUSG00000087014 ENSMUST00000153722 Gm16364 antisense Interval_94120 chr2 84473661 84474885 + 0 NA promoter-TSS (ENSMUSG00000027082.15) protein_coding-promoter-TSS (ENSMUSG00000027082.15) -16163 ENSMUSG00000027082.15 ENSMUSG00000027082 ENSMUST00000144775 Tfpi protein_coding Interval_14717 chr10 39295199 39296089 + 0 NA intron (ENSMUSG00000111183.1, intron 3 of 3) lincRNA-intron (ENSMUSG00000111183.1, intron 3 of 3) 27773 ENSMUSG00000111183.1 ENSMUSG00000111183 ENSMUST00000215530 Gm48486 lincRNA Interval_161348 chr8 119888716 119889570 + 0 NA Intergenic Intergenic -21698 ENSMUSG00000092329.1 ENSMUSG00000092329 ENSMUST00000127664 Galnt2l protein_coding Interval_16498 chr10 63203621 63204274 + 0 NA promoter-TSS (ENSMUSG00000020067.8) protein_coding-promoter-TSS (ENSMUSG00000020067.8) 40206 ENSMUSG00000045391.4 ENSMUSG00000045391 ENSMUST00000054837 1700120B22Rik bidirectional_promoter_lncRNA Interval_166643 chr9 61545620 61546006 + 0 NA Intergenic Intergenic 36090 ENSMUSG00000111381.1 ENSMUSG00000111381 ENSMUST00000213400 Gm34424 transcribed_processed_pseudogene Interval_42441 chr13 13579548 13579809 + 0 NA Intergenic Intergenic 64940 ENSMUSG00000114068.1 ENSMUSG00000114068 ENSMUST00000221249 Gm48783 TEC Interval_8617 chr1 143971121 143971739 + 0 NA Intergenic Intergenic 32602 ENSMUSG00000026360.9 ENSMUSG00000026360 ENSMUST00000134817 Rgs2 protein_coding Interval_12899 chr10 7870877 7871118 + 0 NA TTS (ENSMUSG00000039981.6) protein_coding-TTS (ENSMUSG00000039981.6) -22516 ENSMUSG00000088857.1 ENSMUSG00000088857 ENSMUST00000158232 Gm24726 snoRNA Interval_169017 chr9 90217163 90218926 + 0 NA intron (ENSMUSG00000037410.13, intron 9 of 12) protein_coding-intron (ENSMUSG00000037410.13, intron 9 of 12) 3581 ENSMUSG00000081520.1 ENSMUSG00000081520 ENSMUST00000120385 Gm16200 processed_pseudogene Interval_56186 chr14 111500154 111500602 + 0 NA Intergenic Intergenic -33700 ENSMUSG00000115755.1 ENSMUSG00000115755 ENSMUST00000228532 Gm48993 processed_pseudogene Interval_157123 chr8 65609254 65610045 + 0 NA Intergenic Intergenic 58052 ENSMUSG00000064763.1 ENSMUSG00000064763 ENSMUST00000082829 Gm23515 snRNA Interval_41737 chr12 118540013 118541110 + 0 NA Intergenic Intergenic -10368 ENSMUSG00000113875.1 ENSMUSG00000113875 ENSMUST00000222459 D230030E09Rik lincRNA Interval_10397 chr1 170406767 170407108 + 0 NA intron (ENSMUSG00000038473.14, intron 2 of 7) protein_coding-intron (ENSMUSG00000038473.14, intron 2 of 3) -86157 ENSMUSG00000038473.14 ENSMUSG00000038473 ENSMUST00000159665 Nos1ap protein_coding Interval_162193 chr8 125832221 125832921 + 0 NA intron (ENSMUSG00000060212.13, intron 2 of 18) protein_coding-intron (ENSMUSG00000060212.13, intron 17 of 33) -3538 ENSMUSG00000060212.13 ENSMUSG00000060212 ENSMUST00000187772 Pcnx2 protein_coding Interval_143773 chr7 16221694 16222576 + 0 NA promoter-TSS (ENSMUSG00000006019.15) protein_coding-promoter-TSS (ENSMUSG00000006019.15) -103 ENSMUSG00000006019.15 ENSMUSG00000006019 ENSMUST00000133518 Dhx34 protein_coding Interval_59859 chr15 59904996 59906304 + 0 NA Intergenic Intergenic 24640 ENSMUSG00000115734.1 ENSMUSG00000115734 ENSMUST00000227398 Gm7708 processed_pseudogene Interval_125552 chr5 70398575 70398914 + 0 NA Intergenic Intergenic 152203 ENSMUSG00000094803.1 ENSMUSG00000094803 ENSMUST00000083135 Gm26072 snRNA Interval_85506 chr19 27635639 27635931 + 0 NA Intergenic Intergenic 68222 ENSMUSG00000088266.1 ENSMUSG00000088266 ENSMUST00000157641 Gm24782 snoRNA Interval_133588 chr6 7231816 7232235 + 0 NA Intergenic Intergenic 37753 ENSMUSG00000099178.1 ENSMUSG00000099178 ENSMUST00000183839 Gm8669 processed_pseudogene Interval_14386 chr10 32313028 32313268 + 0 NA intron (ENSMUSG00000069670.8, intron 3 of 3) protein_coding-intron (ENSMUSG00000069670.8, intron 3 of 6) -33455 ENSMUSG00000112409.1 ENSMUSG00000112409 ENSMUST00000219077 C030006N10Rik TEC Interval_56119 chr14 106008816 106009689 + 0 NA Intergenic Intergenic 84230 ENSMUSG00000115800.1 ENSMUSG00000115800 ENSMUST00000226185 Frg2f4 processed_pseudogene Interval_6656 chr1 118578130 118578673 + 0 NA intron (ENSMUSG00000064302.13, intron 9 of 14) protein_coding-intron (ENSMUSG00000064302.13, intron 34 of 39) -49544 ENSMUSG00000026380.10 ENSMUSG00000026380 ENSMUST00000027629 Tfcp2l1 protein_coding Interval_49176 chr13 109208117 109208932 + 0 NA intron (ENSMUSG00000021699.17, intron 1 of 14) protein_coding-intron (ENSMUSG00000021699.17, intron 1 of 14) -116220 ENSMUSG00000076946.2 ENSMUSG00000076946 ENSMUST00000103758 Mir582 miRNA Interval_127220 chr5 101535360 101535898 + 0 NA Intergenic Intergenic -29300 ENSMUSG00000106610.1 ENSMUSG00000106610 ENSMUST00000199021 Gm43103 processed_pseudogene Interval_124090 chr5 38209079 38209579 + 0 NA intron (ENSMUSG00000029127.15, intron 2 of 5) protein_coding-intron (ENSMUSG00000029127.15, intron 4 of 7) -5532 ENSMUSG00000029127.15 ENSMUSG00000029127 ENSMUST00000137577 Zbtb49 protein_coding Interval_3993 chr1 65758013 65758407 + 0 NA Intergenic Intergenic -168328 ENSMUSG00000025945.11 ENSMUSG00000025945 ENSMUST00000114027 Crygf protein_coding Interval_116384 chr4 111071139 111071328 + 0 NA intron (ENSMUSG00000061298.14, intron 4 of 12) protein_coding-intron (ENSMUSG00000061298.14, intron 4 of 12) -218885 ENSMUSG00000081068.1 ENSMUSG00000081068 ENSMUST00000121030 Gm12804 processed_pseudogene Interval_171013 chr9 113718976 113720157 + 0 NA Intergenic Intergenic -21946 ENSMUSG00000033392.16 ENSMUSG00000033392 ENSMUST00000163895 Clasp2 protein_coding Interval_1547 chr1 25242621 25242950 + 0 NA intron (ENSMUSG00000033569.17, intron 16 of 30) protein_coding-intron (ENSMUSG00000033569.17, intron 15 of 29) 19055 ENSMUSG00000080849.1 ENSMUSG00000080849 ENSMUST00000119680 Gm15702 processed_pseudogene Interval_52525 chr14 47325000 47326035 + 0 NA Intergenic Intergenic -4461 ENSMUSG00000115728.1 ENSMUSG00000115728 ENSMUST00000227470 Gm49190 processed_pseudogene Interval_127693 chr5 106727356 106727686 + 0 NA Intergenic Intergenic 11243 ENSMUSG00000106301.1 ENSMUSG00000106301 ENSMUST00000197334 Gm8365 processed_pseudogene Interval_6681 chr1 118720227 118721321 + 0 NA Intergenic Intergenic 38953 ENSMUSG00000088363.1 ENSMUSG00000088363 ENSMUST00000157738 Gm23497 snRNA Interval_108048 chr3 121055957 121056479 + 0 NA Intergenic Intergenic -26436 ENSMUSG00000104749.1 ENSMUSG00000104749 ENSMUST00000200496 Gm42926 TEC Interval_4410 chr1 73968853 73969344 + 0 NA intron (ENSMUSG00000055322.16, intron 18 of 32) protein_coding-intron (ENSMUSG00000055322.16, intron 18 of 34) -113523 ENSMUSG00000098504.1 ENSMUSG00000098504 ENSMUST00000183826 Mir6351 miRNA Interval_162361 chr8 127405475 127406283 + 0 NA intron (ENSMUSG00000025812.18, intron 16 of 24) protein_coding-intron (ENSMUSG00000025812.18, intron 16 of 23) -155556 ENSMUSG00000090074.1 ENSMUSG00000090074 ENSMUST00000161478 Gm6921 processed_pseudogene Interval_12419 chr1 193280551 193280916 + 0 NA promoter-TSS (ENSMUSG00000104348.1) TEC-promoter-TSS (ENSMUSG00000104348.1) -538 ENSMUSG00000104348.1 ENSMUSG00000104348 ENSMUST00000192147 Gm37691 TEC Interval_141934 chr6 135549811 135550228 + 0 NA Intergenic Intergenic -34173 ENSMUSG00000065187.1 ENSMUSG00000065187 ENSMUST00000083253 Gm25136 snoRNA Interval_7961 chr1 134860570 134861173 + 0 NA intron (ENSMUSG00000073557.12, intron 13 of 24) protein_coding-intron (ENSMUSG00000073557.12, intron 13 of 23) 26729 ENSMUSG00000101168.1 ENSMUSG00000101168 ENSMUST00000188123 Gm28892 antisense Interval_37638 chr12 70707021 70707448 + 0 NA Intergenic Intergenic -25384 ENSMUSG00000112950.1 ENSMUSG00000112950 ENSMUST00000222630 Gm32369 lincRNA Interval_157143 chr8 66323143 66323900 + 0 NA intron (ENSMUSG00000036469.16, intron 2 of 5) protein_coding-intron (ENSMUSG00000036469.16, intron 2 of 5) 64014 ENSMUSG00000086156.1 ENSMUSG00000086156 ENSMUST00000132019 Gm15354 antisense Interval_139171 chr6 96795487 96795726 + 0 NA Intergenic Intergenic -234742 ENSMUSG00000077598.1 ENSMUSG00000077598 ENSMUST00000104410 Gm26011 snRNA Interval_128574 chr5 114106333 114107083 + 0 NA TTS (ENSMUSG00000029592.11) protein_coding-TTS (ENSMUSG00000029592.11) -2218 ENSMUSG00000106484.1 ENSMUSG00000106484 ENSMUST00000197629 Gm17833 processed_pseudogene Interval_36816 chr12 54316861 54317450 + 0 NA promoter-TSS (ENSMUSG00000112705.1) lincRNA-promoter-TSS (ENSMUSG00000112705.1) -140 ENSMUSG00000112705.1 ENSMUSG00000112705 ENSMUST00000217997 Gm47552 lincRNA Interval_31620 chr11 101772055 101773089 + 0 NA promoter-TSS (ENSMUSG00000017724.14) protein_coding-promoter-TSS (ENSMUSG00000017724.14) 12738 ENSMUSG00000017724.14 ENSMUSG00000017724 ENSMUST00000154512 Etv4 protein_coding Interval_121512 chr5 3036254 3037489 + 0 NA Intergenic Intergenic -4756 ENSMUSG00000105722.1 ENSMUSG00000105722 ENSMUST00000196476 Gm18187 processed_pseudogene Interval_157181 chr8 67085382 67087118 + 0 NA Intergenic Intergenic -32117 ENSMUSG00000110583.1 ENSMUSG00000110583 ENSMUST00000212608 Gm7639 processed_pseudogene Interval_140668 chr6 120411436 120411915 + 0 NA intron (ENSMUSG00000030180.15, intron 2 of 2) protein_coding-intron (ENSMUSG00000030180.15, intron 18 of 27) -30536 ENSMUSG00000084454.1 ENSMUSG00000084454 ENSMUST00000122505 Gm24592 snRNA Interval_161206 chr8 118647231 118647614 + 0 NA intron (ENSMUSG00000031841.19, intron 2 of 7) protein_coding-intron (ENSMUSG00000031841.19, intron 2 of 13) -31543 ENSMUSG00000110667.1 ENSMUSG00000110667 ENSMUST00000211881 Gm45720 antisense Interval_51539 chr14 29980353 29981120 + 0 NA TTS (ENSMUSG00000015971.5) protein_coding-TTS (ENSMUSG00000015971.5) -1468 ENSMUSG00000015971.5 ENSMUSG00000015971 ENSMUST00000225368 Actr8 protein_coding Interval_155837 chr8 39988292 39988528 + 0 NA Intergenic Intergenic -28304 ENSMUSG00000109815.1 ENSMUSG00000109815 ENSMUST00000209880 Gm7082 processed_pseudogene Interval_112248 chr4 38364090 38364874 + 0 NA Intergenic Intergenic 100564 ENSMUSG00000084148.1 ENSMUSG00000084148 ENSMUST00000119012 Gm12380 processed_pseudogene Interval_156840 chr8 60976608 60977441 + 0 NA intron (ENSMUSG00000004319.15, intron 1 of 4) protein_coding-intron (ENSMUSG00000004319.15, intron 1 of 13) 6220 ENSMUSG00000004319.15 ENSMUSG00000004319 ENSMUST00000145493 Clcn3 protein_coding Interval_102812 chr3 31270104 31270314 + 0 NA intron (ENSMUSG00000069072.9, intron 1 of 7) protein_coding-intron (ENSMUSG00000069072.9, intron 1 of 7) -11815 ENSMUSG00000069072.9 ENSMUSG00000069072 ENSMUST00000108245 Slc7a14 protein_coding Interval_40356 chr12 104247262 104248325 + 0 NA promoter-TSS (ENSMUSG00000041449.16) transcribed_unprocessed_pseudogene-promoter-TSS (ENSMUSG00000041449.16) -2359 ENSMUSG00000041449.16 ENSMUSG00000041449 ENSMUST00000116393 Serpina3h transcribed_unprocessed_pseudogene Interval_56601 chr14 120731974 120732418 + 0 NA Intergenic Intergenic -16989 ENSMUSG00000090284.2 ENSMUSG00000090284 ENSMUST00000138893 Gm17613 lincRNA Interval_129242 chr5 118399952 118400311 + 0 NA Intergenic Intergenic -2801 ENSMUSG00000106812.1 ENSMUSG00000106812 ENSMUST00000201179 Gm28563 lincRNA Interval_52138 chr14 37032726 37034330 + 0 NA Intergenic Intergenic -8994 ENSMUSG00000114739.1 ENSMUSG00000114739 ENSMUST00000223806 Gm47885 processed_pseudogene Interval_20434 chr10 117599905 117600177 + 0 NA Intergenic Intergenic 5315 ENSMUSG00000043800.11 ENSMUSG00000043800 ENSMUST00000179611 Kifc5c-ps transcribed_processed_pseudogene Interval_95337 chr2 106730310 106731002 + 0 NA exon (ENSMUSG00000016386.15, exon 1 of 3) protein_coding-exon (ENSMUSG00000016386.15, exon 1 of 3) 35436 ENSMUSG00000016386.15 ENSMUSG00000016386 ENSMUST00000133401 Mpped2 protein_coding Interval_76562 chr17 81098585 81099003 + 0 NA Intergenic Intergenic -33712 ENSMUSG00000024246.9 ENSMUSG00000024246 ENSMUST00000234801 Thumpd2 protein_coding Interval_165974 chr9 55110190 55111194 + 0 NA Intergenic Intergenic -15322 ENSMUSG00000110793.1 ENSMUSG00000110793 ENSMUST00000216059 Gm7395 processed_pseudogene Interval_72527 chr17 30480436 30480669 + 0 NA exon (ENSMUSG00000062202.14, exon 4 of 4) protein_coding-exon (ENSMUSG00000062202.14, exon 4 of 4) -4109 ENSMUSG00000103207.1 ENSMUSG00000103207 ENSMUST00000194024 Gm9874 TEC Interval_128364 chr5 112821632 112823050 + 0 NA intron (ENSMUSG00000072720.9, intron 16 of 16) protein_coding-intron (ENSMUSG00000072720.9, intron 21 of 43) 29009 ENSMUSG00000098230.7 ENSMUSG00000098230 ENSMUST00000189887 1700095B10Rik antisense Interval_155677 chr8 36084586 36084792 + 0 NA Intergenic Intergenic -10172 ENSMUSG00000050271.12 ENSMUSG00000050271 ENSMUST00000150295 Prag1 protein_coding Interval_92247 chr2 57300751 57300982 + 0 NA intron (ENSMUSG00000026827.12, intron 3 of 16) protein_coding-intron (ENSMUSG00000026827.12, intron 3 of 16) -25180 ENSMUSG00000084292.1 ENSMUSG00000084292 ENSMUST00000118714 Gm13535 processed_pseudogene Interval_36836 chr12 54545757 54546938 + 0 NA Intergenic Intergenic -29268 ENSMUSG00000113947.1 ENSMUSG00000113947 ENSMUST00000223133 Gm10465 lincRNA Interval_95749 chr2 115723032 115724184 + 0 NA intron (ENSMUSG00000040282.13, intron 10 of 10) protein_coding-intron (ENSMUSG00000040282.13, intron 10 of 10) 84883 ENSMUSG00000088606.1 ENSMUSG00000088606 ENSMUST00000157981 Mir1951 miRNA Interval_19602 chr10 105469913 105470646 + 0 NA intron (ENSMUSG00000036019.8, intron 1 of 8) protein_coding-intron (ENSMUSG00000036019.8, intron 1 of 11) 38320 ENSMUSG00000084399.2 ENSMUSG00000084399 ENSMUST00000118054 Gm15666 transcribed_processed_pseudogene Interval_71394 chr17 23259956 23260914 + 0 NA intron (ENSMUSG00000093493.1, intron 4 of 5) unprocessed_pseudogene-intron (ENSMUSG00000093493.1, intron 4 of 5) 16743 ENSMUSG00000093493.1 ENSMUSG00000093493 ENSMUST00000176979 Vmn2r-ps133 unprocessed_pseudogene Interval_90968 chr2 33801462 33802560 + 0 NA intron (ENSMUSG00000038740.9, intron 7 of 7) protein_coding-intron (ENSMUSG00000038740.9, intron 7 of 9) -3805 ENSMUSG00000086484.1 ENSMUSG00000086484 ENSMUST00000140412 Nron antisense Interval_118519 chr4 132232525 132233443 + 0 NA intron (ENSMUSG00000028901.13, intron 6 of 9) protein_coding-intron (ENSMUSG00000028901.13, intron 5 of 8) 12282 ENSMUSG00000084105.1 ENSMUSG00000084105 ENSMUST00000119355 Gm13252 processed_pseudogene Interval_69953 chr17 3465793 3466101 + 0 NA intron (ENSMUSG00000023800.15, intron 1 of 3) protein_coding-intron (ENSMUSG00000023800.15, intron 14 of 26) -3615 ENSMUSG00000115039.1 ENSMUSG00000115039 ENSMUST00000228135 Gm7043 processed_pseudogene Interval_152627 chr7 135517314 135517532 + 0 NA intron (ENSMUSG00000050866.7, intron 2 of 2) protein_coding-intron (ENSMUSG00000050866.7, intron 2 of 2) 11231 ENSMUSG00000050866.7 ENSMUSG00000050866 ENSMUST00000053716 Clrn3 protein_coding Interval_132184 chr5 143165198 143166388 + 0 NA promoter-TSS (ENSMUSG00000104529.4) lincRNA-promoter-TSS (ENSMUSG00000104529.4) -90 ENSMUSG00000104529.4 ENSMUSG00000104529 ENSMUST00000198334 Rbakdn lincRNA Interval_123883 chr5 36285493 36286569 + 0 NA intron (ENSMUSG00000029093.14, intron 1 of 7) protein_coding-intron (ENSMUSG00000029093.14, intron 1 of 26) -15539 ENSMUSG00000098884.1 ENSMUSG00000098884 ENSMUST00000184943 Mir7689 miRNA Interval_64465 chr16 11670354 11671401 + 0 NA intron (ENSMUSG00000071669.14, intron 18 of 20) protein_coding-intron (ENSMUSG00000071669.14, intron 11 of 13) 20980 ENSMUSG00000085732.1 ENSMUSG00000085732 ENSMUST00000154314 Gm4279 antisense Interval_153923 chr8 11198192 11198454 + 0 NA TTS (ENSMUSG00000031502.11) protein_coding-TTS (ENSMUSG00000031502.11) 10568 ENSMUSG00000085573.1 ENSMUSG00000085573 ENSMUST00000151014 Gm15418 antisense Interval_8849 chr1 151526960 151527189 + 0 NA Intergenic Intergenic -6387 ENSMUSG00000100551.1 ENSMUSG00000100551 ENSMUST00000187109 Gm19503 processed_pseudogene Interval_98046 chr2 147177818 147179137 + 0 NA intron (ENSMUSG00000027434.11, intron 2 of 2) protein_coding-intron (ENSMUSG00000027434.11, intron 2 of 2) -5606 ENSMUSG00000086509.2 ENSMUSG00000086509 ENSMUST00000136998 Nkx2-2os antisense Interval_48476 chr13 99323428 99325267 + 0 NA intron (ENSMUSG00000021650.7, intron 8 of 9) protein_coding-intron (ENSMUSG00000021650.7, intron 8 of 9) 20358 ENSMUSG00000021650.7 ENSMUSG00000021650 ENSMUST00000022153 Ptcd2 protein_coding Interval_136540 chr6 55358607 55358906 + 0 NA Intergenic Intergenic -17539 ENSMUSG00000004654.6 ENSMUSG00000004654 ENSMUST00000203241 Ghrhr protein_coding Interval_59776 chr15 59173619 59175593 + 0 NA Intergenic Intergenic -36302 ENSMUSG00000025922.9 ENSMUSG00000025922 ENSMUST00000027054 Rpl7-ps8 processed_pseudogene Interval_28297 chr11 74989088 74989442 + 0 NA promoter-TSS (ENSMUSG00000038290.15) protein_coding-promoter-TSS (ENSMUSG00000038290.15) 4229 ENSMUSG00000101295.1 ENSMUSG00000101295 ENSMUST00000189608 Gm28180 antisense Interval_9398 chr1 156787321 156787737 + 0 NA Intergenic Intergenic -5983 ENSMUSG00000046057.4 ENSMUSG00000046057 ENSMUST00000121352 Gm15428 processed_pseudogene Interval_91419 chr2 38661535 38661808 + 0 NA Intergenic Intergenic -10557 ENSMUSG00000083722.2 ENSMUSG00000083722 ENSMUST00000152645 Adgrd2-ps transcribed_unitary_pseudogene Interval_85275 chr19 24288651 24288897 + 0 NA promoter-TSS (ENSMUSG00000082107.1) processed_pseudogene-promoter-TSS (ENSMUSG00000082107.1) -942 ENSMUSG00000082107.1 ENSMUSG00000082107 ENSMUST00000118970 Gm16216 processed_pseudogene Interval_154304 chr8 14218152 14218355 + 0 NA intron (ENSMUSG00000047495.15, intron 1 of 13) protein_coding-intron (ENSMUSG00000047495.15, intron 1 of 14) 55058 ENSMUSG00000088311.1 ENSMUSG00000088311 ENSMUST00000157686 Gm26184 snoRNA Interval_163947 chr9 29484223 29484465 + 0 NA intron (ENSMUSG00000059974.10, intron 1 of 2) protein_coding-intron (ENSMUSG00000059974.10, intron 1 of 7) 108166 ENSMUSG00000085638.1 ENSMUSG00000085638 ENSMUST00000141752 Gm15521 sense_intronic Interval_473 chr1 6115039 6115361 + 0 NA Intergenic Intergenic -65155 ENSMUSG00000103090.1 ENSMUSG00000103090 ENSMUST00000191956 Gm19214 processed_pseudogene Interval_110829 chr4 8794854 8796407 + 0 NA intron (ENSMUSG00000041235.12, intron 3 of 37) protein_coding-intron (ENSMUSG00000041235.12, intron 3 of 37) -59601 ENSMUSG00000041235.12 ENSMUSG00000041235 ENSMUST00000222546 Chd7 protein_coding Interval_115801 chr4 104637025 104637382 + 0 NA intron (ENSMUSG00000028519.16, intron 2 of 6) protein_coding-intron (ENSMUSG00000028519.16, intron 3 of 5) 31907 ENSMUSG00000028519.16 ENSMUSG00000028519 ENSMUST00000149672 Dab1 protein_coding Interval_149683 chr7 100620383 100620591 + 0 NA intron (ENSMUSG00000030704.14, intron 1 of 7) protein_coding-intron (ENSMUSG00000030704.14, intron 1 of 7) -4031 ENSMUSG00000082210.1 ENSMUSG00000082210 ENSMUST00000117374 Gm14382 processed_pseudogene Interval_9818 chr1 162650393 162651257 + 0 NA intron (ENSMUSG00000091060.2, intron 2 of 2) protein_coding-intron (ENSMUSG00000091060.2, intron 3 of 3) 7281 ENSMUSG00000091060.2 ENSMUSG00000091060 ENSMUST00000169439 Myocos protein_coding Interval_84033 chr19 6860846 6861796 + 0 NA Intergenic Intergenic -12968 ENSMUSG00000047810.9 ENSMUSG00000047810 ENSMUST00000237252 Ccdc88b protein_coding Interval_50699 chr14 18330949 18332095 + 0 NA promoter-TSS (ENSMUSG00000021774.13) protein_coding-promoter-TSS (ENSMUSG00000021774.13) 222 ENSMUSG00000021774.13 ENSMUSG00000021774 ENSMUST00000161580 Ube2e1 protein_coding Interval_23006 chr11 18870821 18872038 + 0 NA intron (ENSMUSG00000085743.1, intron 1 of 2) processed_transcript-intron (ENSMUSG00000085743.1, intron 1 of 2) -11314 ENSMUSG00000085743.1 ENSMUSG00000085743 ENSMUST00000133948 8430419K02Rik processed_transcript Interval_124770 chr5 53785095 53785305 + 0 NA Intergenic Intergenic -77640 ENSMUSG00000029193.7 ENSMUSG00000029193 ENSMUST00000202946 Cckar protein_coding Interval_52403 chr14 45648646 45649594 + 0 NA intron (ENSMUSG00000037697.19, intron 1 of 2) protein_coding-intron (ENSMUSG00000037697.19, intron 1 of 11) 8933 ENSMUSG00000093167.1 ENSMUSG00000093167 ENSMUST00000175426 Mir5131 miRNA Interval_48613 chr13 100669187 100670336 + 0 NA promoter-TSS (ENSMUSG00000048924.14) protein_coding-promoter-TSS (ENSMUSG00000048924.14) 44 ENSMUSG00000048924.14 ENSMUSG00000048924 ENSMUST00000057325 Ccdc125 protein_coding Interval_173587 chrX 100392280 100392563 + 0 NA intron (ENSMUSG00000059327.9, intron 5 of 6) protein_coding-intron (ENSMUSG00000059327.9, intron 5 of 6) 7278 ENSMUSG00000059327.9 ENSMUSG00000059327 ENSMUST00000123547 Eda protein_coding Interval_95013 chr2 103051387 103052782 + 0 NA intron (ENSMUSG00000010914.10, intron 1 of 5) protein_coding-intron (ENSMUSG00000010914.10, intron 2 of 10) 21251 ENSMUSG00000010914.10 ENSMUSG00000010914 ENSMUST00000111183 Pdhx protein_coding Interval_2414 chr1 39122562 39124069 + 0 NA Intergenic Intergenic -39977 ENSMUSG00000103182.1 ENSMUSG00000103182 ENSMUST00000195455 Gm37091 TEC Interval_27026 chr11 62439678 62441548 + 0 NA intron (ENSMUSG00000018501.17, intron 1 of 4) protein_coding-intron (ENSMUSG00000018501.17, intron 1 of 45) -17995 ENSMUSG00000014245.8 ENSMUSG00000014245 ENSMUST00000147918 Pigl protein_coding Interval_46030 chr13 60425180 60426222 + 0 NA intron (ENSMUSG00000114274.1, intron 2 of 3) lincRNA-intron (ENSMUSG00000114274.1, intron 2 of 3) 9030 ENSMUSG00000114274.1 ENSMUSG00000114274 ENSMUST00000225281 Gm35333 lincRNA Interval_115895 chr4 105945524 105946652 + 0 NA Intergenic Intergenic 29797 ENSMUSG00000089065.1 ENSMUSG00000089065 ENSMUST00000158440 Gm24363 misc_RNA Interval_78626 chr18 15658423 15658623 + 0 NA intron (ENSMUSG00000047161.12, intron 2 of 5) protein_coding-intron (ENSMUSG00000047161.12, intron 1 of 3) 101634 ENSMUSG00000047161.12 ENSMUSG00000047161 ENSMUST00000130553 Chst9 protein_coding Interval_115044 chr4 88810867 88811128 + 0 NA Intergenic Intergenic -5231 ENSMUSG00000100713.1 ENSMUSG00000100713 ENSMUST00000105143 Ifna7 protein_coding Interval_126665 chr5 91912952 91913440 + 0 NA intron (ENSMUSG00000107301.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000107301.1, intron 1 of 1) 207 ENSMUSG00000107301.1 ENSMUSG00000107301 ENSMUST00000202249 Gm43688 lincRNA Interval_2799 chr1 45548153 45548987 + 0 NA Intergenic Intergenic -27816 ENSMUSG00000100361.1 ENSMUSG00000100361 ENSMUST00000186840 Gm7063 processed_pseudogene Interval_79638 chr18 34162529 34163370 + 0 NA Intergenic Intergenic 25990 ENSMUSG00000096804.1 ENSMUSG00000096804 ENSMUST00000157988 Gm23411 snRNA Interval_50011 chr13 119695738 119696950 + 0 NA intron (ENSMUSG00000093930.2, intron 2 of 2) protein_coding-intron (ENSMUSG00000093930.2, intron 1 of 9) 5882 ENSMUSG00000093930.2 ENSMUSG00000093930 ENSMUST00000224188 Hmgcs1 protein_coding Interval_85407 chr19 25545572 25546135 + 0 NA exon (ENSMUSG00000024837.15, exon 3 of 5) protein_coding-exon (ENSMUSG00000024837.15, exon 3 of 5) 40146 ENSMUSG00000024837.15 ENSMUSG00000024837 ENSMUST00000160814 Dmrt1 protein_coding Interval_129898 chr5 122982122 122982683 + 0 NA intron (ENSMUSG00000029475.17, intron 4 of 10) protein_coding-intron (ENSMUSG00000029475.17, intron 4 of 22) -6952 ENSMUSG00000056735.5 ENSMUSG00000056735 ENSMUST00000148466 A930024E05Rik antisense Interval_34338 chr12 3490666 3491021 + 0 NA intron (ENSMUSG00000037486.18, intron 3 of 4) protein_coding-intron (ENSMUSG00000037486.18, intron 9 of 10) 16184 ENSMUSG00000037486.18 ENSMUSG00000037486 ENSMUST00000152196 Asxl2 protein_coding Interval_38455 chr12 79163435 79163705 + 0 NA exon (ENSMUSG00000091534.2, exon 1 of 1) processed_pseudogene-exon (ENSMUSG00000091534.2, exon 1 of 1) 265 ENSMUSG00000091534.2 ENSMUSG00000091534 ENSMUST00000170289 Gm17195 processed_pseudogene Interval_172497 chrX 21648561 21648897 + 0 NA Intergenic Intergenic -30219 ENSMUSG00000081475.1 ENSMUSG00000081475 ENSMUST00000117458 Gm14558 processed_pseudogene Interval_46070 chr13 60746309 60746612 + 0 NA intron (ENSMUSG00000021559.14, intron 19 of 26) protein_coding-intron (ENSMUSG00000021559.14, intron 19 of 26) -25215 ENSMUSG00000096874.2 ENSMUSG00000096874 ENSMUST00000078515 Gm10312 processed_pseudogene Interval_114639 chr4 83382547 83382933 + 0 NA promoter-TSS (ENSMUSG00000087592.1) lincRNA-promoter-TSS (ENSMUSG00000087592.1) -324 ENSMUSG00000087592.1 ENSMUSG00000087592 ENSMUST00000126437 Gm11184 lincRNA Interval_130293 chr5 125458800 125459005 + 0 NA exon (ENSMUSG00000037905.13, exon 3 of 3) protein_coding-exon (ENSMUSG00000037905.13, exon 3 of 3) -12595 ENSMUSG00000104793.1 ENSMUSG00000104793 ENSMUST00000199788 Gm43756 TEC Interval_100888 chr2 173171018 173171822 + 0 NA Intergenic Intergenic 18347 ENSMUSG00000027513.11 ENSMUSG00000027513 ENSMUST00000136885 Pck1 protein_coding Interval_159679 chr8 96773502 96774355 + 0 NA Intergenic Intergenic 117799 ENSMUSG00000077938.1 ENSMUSG00000077938 ENSMUST00000104745 Gm24132 miRNA Interval_1269 chr1 18763187 18763401 + 0 NA Intergenic Intergenic 54866 ENSMUSG00000101306.1 ENSMUSG00000101306 ENSMUST00000189030 Gm5252 processed_pseudogene Interval_52118 chr14 36862032 36862858 + 0 NA Intergenic Intergenic -6401 ENSMUSG00000065894.1 ENSMUSG00000065894 ENSMUST00000083960 n-R5s46 rRNA Interval_46118 chr13 61839443 61840440 + 0 NA intron (ENSMUSG00000113626.1, intron 1 of 2) transcribed_processed_pseudogene-intron (ENSMUSG00000113626.1, intron 1 of 2) -16277 ENSMUSG00000080451.1 ENSMUSG00000080451 ENSMUST00000116801 Gm24193 miRNA Interval_22311 chr11 8671418 8672423 + 0 NA Intergenic Intergenic -7239 ENSMUSG00000020422.14 ENSMUSG00000020422 ENSMUST00000134823 Tns3 protein_coding Interval_68087 chr16 64908659 64909650 + 0 NA Intergenic Intergenic -2119 ENSMUSG00000097999.1 ENSMUSG00000097999 ENSMUST00000182707 Gm9061 processed_pseudogene Interval_76921 chr17 84984864 84985394 + 0 NA intron (ENSMUSG00000061130.13, intron 2 of 7) protein_coding-intron (ENSMUSG00000061130.13, intron 1 of 5) -8551 ENSMUSG00000061130.13 ENSMUSG00000061130 ENSMUST00000234851 Ppm1b protein_coding Interval_159577 chr8 95578010 95578236 + 0 NA exon (ENSMUSG00000081436.1, exon 1 of 1) processed_pseudogene-exon (ENSMUSG00000081436.1, exon 1 of 1) 652 ENSMUSG00000081436.1 ENSMUSG00000081436 ENSMUST00000122282 Gm5912 processed_pseudogene Interval_13128 chr10 12018282 12018910 + 0 NA Intergenic Intergenic -8825 ENSMUSG00000112747.1 ENSMUSG00000112747 ENSMUST00000218793 Gm48721 lincRNA Interval_57198 chr15 7443917 7444207 + 0 NA Intergenic Intergenic 46165 ENSMUSG00000090199.1 ENSMUSG00000090199 ENSMUST00000161643 Gm16029 antisense Interval_33221 chr11 115317421 115318917 + 0 NA exon (ENSMUSG00000045288.10, exon 2 of 3) protein_coding-exon (ENSMUSG00000045288.10, exon 2 of 3) 3872 ENSMUSG00000045288.10 ENSMUSG00000045288 ENSMUST00000103037 Ush1g protein_coding Interval_113306 chr4 53338843 53340551 + 0 NA Intergenic Intergenic 31471 ENSMUSG00000083735.1 ENSMUSG00000083735 ENSMUST00000119750 Gm12495 processed_pseudogene Interval_80812 chr18 47430841 47431770 + 0 NA Intergenic Intergenic 6473 ENSMUSG00000117474.1 ENSMUSG00000117474 ENSMUST00000234542 Gm50086 lincRNA Interval_129193 chr5 118108268 118108919 + 0 NA intron (ENSMUSG00000032867.8, intron 5 of 7) protein_coding-intron (ENSMUSG00000032867.8, intron 5 of 10) 40301 ENSMUSG00000088293.1 ENSMUSG00000088293 ENSMUST00000157668 Gm26411 snRNA Interval_18732 chr10 89760912 89761237 + 0 NA intron (ENSMUSG00000019951.10, intron 2 of 6) protein_coding-intron (ENSMUSG00000019951.10, intron 1 of 20) 15836 ENSMUSG00000019951.10 ENSMUSG00000019951 ENSMUST00000219819 Uhrf1bp1l protein_coding Interval_65498 chr16 22820242 22821183 + 0 NA intron (ENSMUSG00000004462.7, intron 1 of 1) protein_coding-intron (ENSMUSG00000004462.7, intron 6 of 7) -9135 ENSMUSG00000033501.5 ENSMUSG00000033501 ENSMUST00000040592 Crygs protein_coding Interval_42841 chr13 20208299 20208640 + 0 NA intron (ENSMUSG00000041112.17, intron 3 of 3) protein_coding-intron (ENSMUSG00000041112.17, intron 3 of 21) -63436 ENSMUSG00000113649.1 ENSMUSG00000113649 ENSMUST00000222367 Gm47665 TEC Interval_129086 chr5 117328451 117329466 + 0 NA intron (ENSMUSG00000066894.14, intron 2 of 8) protein_coding-intron (ENSMUSG00000066894.14, intron 2 of 8) 5312 ENSMUSG00000066894.14 ENSMUSG00000066894 ENSMUST00000139026 Vsig10 protein_coding Interval_88487 chr2 5567051 5568094 + 0 NA intron (ENSMUSG00000039145.16, intron 1 of 1) protein_coding-intron (ENSMUSG00000039145.16, intron 1 of 10) -35999 ENSMUSG00000082013.1 ENSMUSG00000082013 ENSMUST00000117145 Gm13216 processed_pseudogene Interval_168129 chr9 77406418 77407174 + 0 NA Intergenic Intergenic -7378 ENSMUSG00000099170.1 ENSMUSG00000099170 ENSMUST00000183878 5730403I07Rik lincRNA Interval_150520 chr7 111782068 111782338 + 0 NA Intergenic Intergenic -2226 ENSMUSG00000038296.14 ENSMUSG00000038296 ENSMUST00000106663 Galnt18 protein_coding Interval_103201 chr3 36628416 36628741 + 0 NA intron (ENSMUSG00000027716.13, intron 10 of 11) protein_coding-intron (ENSMUSG00000027716.13, intron 10 of 11) -51293 ENSMUSG00000037325.10 ENSMUSG00000037325 ENSMUST00000142333 Bbs7 protein_coding Interval_31455 chr11 100781652 100783222 + 0 NA exon (ENSMUSG00000020919.11, exon 19 of 19) protein_coding-exon (ENSMUSG00000020919.11, exon 19 of 19) -7637 ENSMUSG00000089049.1 ENSMUSG00000089049 ENSMUST00000158424 Gm24358 misc_RNA Interval_93871 chr2 77784051 77784283 + 0 NA intron (ENSMUSG00000027016.17, intron 1 of 3) protein_coding-intron (ENSMUSG00000027016.17, intron 1 of 3) -56449 ENSMUSG00000087102.1 ENSMUSG00000087102 ENSMUST00000154297 Gm13661 lincRNA Interval_10663 chr1 172528587 172529097 + 0 NA intron (ENSMUSG00000026546.16, intron 2 of 4) protein_coding-intron (ENSMUSG00000026546.16, intron 2 of 11) 8041 ENSMUSG00000026546.16 ENSMUSG00000026546 ENSMUST00000160303 Cfap45 protein_coding Interval_158588 chr8 84650157 84650896 + 0 NA Intergenic Intergenic 12328 ENSMUSG00000053560.5 ENSMUSG00000053560 ENSMUST00000060427 Ier2 protein_coding Interval_87440 chr19 50758101 50758683 + 0 NA intron (ENSMUSG00000097446.1, intron 5 of 7) antisense-intron (ENSMUSG00000097446.1, intron 5 of 7) -44707 ENSMUSG00000117758.1 ENSMUSG00000117758 ENSMUST00000235421 Gm50302 lincRNA Interval_103111 chr3 35472690 35473317 + 0 NA Intergenic Intergenic 59170 ENSMUSG00000106512.1 ENSMUSG00000106512 ENSMUST00000197222 Gm43078 TEC Interval_153620 chr8 3955801 3956348 + 0 NA Intergenic Intergenic -10021 ENSMUSG00000040165.14 ENSMUSG00000040165 ENSMUST00000153915 Cd209c protein_coding Interval_42600 chr13 16515659 16516068 + 0 NA Intergenic Intergenic 17958 ENSMUSG00000113972.1 ENSMUSG00000113972 ENSMUST00000222545 Gm48497 processed_pseudogene Interval_77509 chr17 90500241 90501490 + 0 NA intron (ENSMUSG00000024109.18, intron 3 of 3) protein_coding-intron (ENSMUSG00000024109.18, intron 15 of 20) -44292 ENSMUSG00000024109.18 ENSMUSG00000024109 ENSMUST00000162002 Nrxn1 protein_coding Interval_138345 chr6 87453037 87453293 + 0 NA Intergenic Intergenic 10482 ENSMUSG00000030047.14 ENSMUSG00000030047 ENSMUST00000203559 Arhgap25 protein_coding Interval_128425 chr5 113263942 113264271 + 0 NA intron (ENSMUSG00000042216.13, intron 9 of 12) protein_coding-intron (ENSMUSG00000042216.13, intron 18 of 24) 15230 ENSMUSG00000042216.13 ENSMUSG00000042216 ENSMUST00000140981 Sgsm1 protein_coding Interval_63256 chr15 99953175 99953475 + 0 NA TTS (ENSMUSG00000096111.7) antisense-TTS (ENSMUSG00000096111.7) 13736 ENSMUSG00000045350.15 ENSMUSG00000045350 ENSMUST00000100209 Fam186a protein_coding Interval_146918 chr7 55859249 55859852 + 0 NA intron (ENSMUSG00000030447.15, intron 2 of 31) protein_coding-intron (ENSMUSG00000030447.15, intron 1 of 30) -12309 ENSMUSG00000030447.15 ENSMUSG00000030447 ENSMUST00000205656 Cyfip1 protein_coding Interval_48716 chr13 101935319 101935617 + 0 NA Intergenic Intergenic 15048 ENSMUSG00000114717.1 ENSMUSG00000114717 ENSMUST00000224781 Gm17832 processed_pseudogene Interval_119224 chr4 136302982 136304780 + 0 NA Intergenic Intergenic 4005 ENSMUSG00000081330.1 ENSMUSG00000081330 ENSMUST00000119087 Gm13013 processed_pseudogene Interval_154520 chr8 18906309 18907550 + 0 NA promoter-TSS (ENSMUSG00000110651.1) processed_pseudogene-promoter-TSS (ENSMUSG00000110651.1) -396 ENSMUSG00000110651.1 ENSMUSG00000110651 ENSMUST00000212105 Gm45770 processed_pseudogene Interval_153291 chr7 143360348 143360591 + 0 NA intron (ENSMUSG00000009545.14, intron 12 of 15) protein_coding-intron (ENSMUSG00000009545.14, intron 12 of 15) 4156 ENSMUSG00000101360.2 ENSMUSG00000101360 ENSMUST00000188294 4933417O13Rik antisense Interval_132623 chr5 146794121 146795539 + 0 NA exon (ENSMUSG00000029640.17, exon 1 of 9) protein_coding-exon (ENSMUSG00000029640.17, exon 1 of 9) -1088 ENSMUSG00000104845.1 ENSMUSG00000104845 ENSMUST00000197536 1700041I07Rik lincRNA Interval_139856 chr6 111545533 111545924 + 0 NA intron (ENSMUSG00000056755.13, intron 10 of 10) protein_coding-intron (ENSMUSG00000056755.13, intron 10 of 10) 49984 ENSMUSG00000056755.13 ENSMUSG00000056755 ENSMUST00000174310 Grm7 protein_coding Interval_79171 chr18 25389103 25390101 + 0 NA intron (ENSMUSG00000033632.16, intron 9 of 11) protein_coding-intron (ENSMUSG00000033632.16, intron 7 of 9) -2199 ENSMUSG00000089908.1 ENSMUSG00000089908 ENSMUST00000163015 Gm16558 processed_pseudogene Interval_61202 chr15 79942425 79944023 + 0 NA intron (ENSMUSG00000053411.16, intron 1 of 5) protein_coding-intron (ENSMUSG00000053411.16, intron 1 of 5) -9394 ENSMUSG00000053411.16 ENSMUSG00000053411 ENSMUST00000177061 Cbx7 protein_coding Interval_102804 chr3 31165897 31166144 + 0 NA Intergenic Intergenic 16100 ENSMUSG00000037625.7 ENSMUSG00000037625 ENSMUST00000046174 Cldn11 protein_coding Interval_100820 chr2 172710025 172711330 + 0 NA Intergenic Intergenic 153664 ENSMUSG00000093160.1 ENSMUSG00000093160 ENSMUST00000175419 Gm22773 miRNA Interval_118490 chr4 132015045 132015860 + 0 NA intron (ENSMUSG00000028906.17, intron 1 of 20) protein_coding-intron (ENSMUSG00000028906.17, intron 1 of 20) -23163 ENSMUSG00000098577.1 ENSMUSG00000098577 ENSMUST00000184484 Gm27445 miRNA Interval_915 chr1 13134210 13134686 + 0 NA Intergenic Intergenic -7285 ENSMUSG00000042414.7 ENSMUSG00000042414 ENSMUST00000047577 Prdm14 protein_coding Interval_29358 chr11 83424819 83425134 + 0 NA intron (ENSMUSG00000020686.12, intron 5 of 6) protein_coding-intron (ENSMUSG00000020686.12, intron 4 of 5) 4479 ENSMUSG00000020686.12 ENSMUSG00000020686 ENSMUST00000147301 Gas2l2 protein_coding Interval_21925 chr11 5241954 5242173 + 0 NA intron (ENSMUSG00000020393.16, intron 2 of 8) protein_coding-intron (ENSMUSG00000020393.16, intron 2 of 8) -3615 ENSMUSG00000020393.16 ENSMUSG00000020393 ENSMUST00000151978 Kremen1 protein_coding Interval_166189 chr9 57337758 57338016 + 0 NA Intergenic Intergenic 3759 ENSMUSG00000066626.5 ENSMUSG00000066626 ENSMUST00000085711 Gm5121 processed_pseudogene Interval_1631 chr1 30491785 30492032 + 0 NA Intergenic Intergenic -158511 ENSMUSG00000098883.1 ENSMUSG00000098883 ENSMUST00000184585 Gm27430 miRNA Interval_42023 chr13 6613576 6613793 + 0 NA TTS (ENSMUSG00000021196.14) protein_coding-TTS (ENSMUSG00000021196.14) -15805 ENSMUSG00000021196.14 ENSMUSG00000021196 ENSMUST00000136585 Pfkp protein_coding Interval_3198 chr1 54676605 54677316 + 0 NA intron (ENSMUSG00000052331.14, intron 2 of 2) protein_coding-intron (ENSMUSG00000052331.14, intron 17 of 27) -4769 ENSMUSG00000101674.6 ENSMUSG00000101674 ENSMUST00000188243 4930444A19Rik antisense Interval_20349 chr10 117040410 117040807 + 0 NA Intergenic Intergenic -3138 ENSMUSG00000112242.1 ENSMUSG00000112242 ENSMUST00000217799 Gm10747 lincRNA Interval_144957 chr7 29098179 29098787 + 0 NA intron (ENSMUSG00000030592.18, intron 24 of 108) protein_coding-intron (ENSMUSG00000030592.18, intron 23 of 105) -14789 ENSMUSG00000089219.1 ENSMUSG00000089219 ENSMUST00000158594 Mir1963 miRNA Interval_8069 chr1 135544613 135545227 + 0 NA intron (ENSMUSG00000009418.16, intron 4 of 30) protein_coding-intron (ENSMUSG00000009418.16, intron 1 of 29) -19582 ENSMUSG00000104524.1 ENSMUSG00000104524 ENSMUST00000192904 Gm37333 TEC Interval_120912 chr4 151520420 151520653 + 0 NA intron (ENSMUSG00000014592.21, intron 5 of 7) protein_coding-intron (ENSMUSG00000014592.21, intron 4 of 23) 144066 ENSMUSG00000085593.1 ENSMUSG00000085593 ENSMUST00000129097 4930589P08Rik antisense Interval_80298 chr18 38960452 38961412 + 0 NA intron (ENSMUSG00000117994.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000117994.1, intron 4 of 4) 33260 ENSMUSG00000086991.1 ENSMUSG00000086991 ENSMUST00000131421 Gm15334 antisense Interval_6947 chr1 121235015 121235557 + 0 NA Intergenic Intergenic 11010 ENSMUSG00000101700.1 ENSMUSG00000101700 ENSMUST00000191007 Gm29359 lincRNA Interval_67250 chr16 44765811 44766458 + 0 NA intron (ENSMUSG00000022667.18, intron 1 of 7) protein_coding-intron (ENSMUSG00000022667.18, intron 1 of 6) 335 ENSMUSG00000022667.18 ENSMUSG00000022667 ENSMUST00000134625 Cd200r1 protein_coding Interval_93522 chr2 73768431 73769191 + 0 NA promoter-TSS (ENSMUSG00000056486.18) protein_coding-promoter-TSS (ENSMUSG00000056486.18) -40351 ENSMUSG00000081062.1 ENSMUSG00000081062 ENSMUST00000118445 Gm13640 processed_pseudogene Interval_143639 chr7 13558787 13558955 + 0 NA intron (ENSMUSG00000078800.5, intron 2 of 4) protein_coding-intron (ENSMUSG00000078800.5, intron 2 of 4) 12196 ENSMUSG00000078800.5 ENSMUSG00000078800 ENSMUST00000202285 Bsph2 protein_coding Interval_67596 chr16 51988330 51988534 + 0 NA intron (ENSMUSG00000116725.1, intron 1 of 3) processed_transcript-intron (ENSMUSG00000116725.1, intron 1 of 3) -1145 ENSMUSG00000116725.1 ENSMUSG00000116725 ENSMUST00000232050 Gm29686 processed_transcript Interval_30685 chr11 95890380 95891145 + 0 NA intron (ENSMUSG00000013418.8, intron 3 of 10) protein_coding-intron (ENSMUSG00000013418.8, intron 3 of 10) 15684 ENSMUSG00000086255.1 ENSMUSG00000086255 ENSMUST00000129261 Gm11534 antisense Interval_138475 chr6 88509172 88509873 + 0 NA intron (ENSMUSG00000030082.14, intron 1 of 4) protein_coding-intron (ENSMUSG00000030082.14, intron 7 of 11) 3273 ENSMUSG00000030082.14 ENSMUSG00000030082 ENSMUST00000155079 Sec61a1 protein_coding Interval_147368 chr7 66200571 66200964 + 0 NA Intergenic Intergenic 10212 ENSMUSG00000108686.1 ENSMUSG00000108686 ENSMUST00000206648 Gm45080 processed_pseudogene Interval_1230 chr1 17669438 17670252 + 0 NA Intergenic Intergenic -28764 ENSMUSG00000100053.1 ENSMUSG00000100053 ENSMUST00000186267 Gm28154 antisense Interval_88326 chr2 3798486 3798800 + 0 NA Intergenic Intergenic -43466 ENSMUSG00000085205.1 ENSMUSG00000085205 ENSMUST00000131044 Gm13185 antisense Interval_81342 chr18 58555522 58556505 + 0 NA promoter-TSS (ENSMUSG00000024600.8) protein_coding-promoter-TSS (ENSMUSG00000024600.8) -244 ENSMUSG00000024600.8 ENSMUSG00000024600 ENSMUST00000025500 Slc27a6 protein_coding Interval_92911 chr2 68399074 68399351 + 0 NA intron (ENSMUSG00000027030.15, intron 2 of 15) protein_coding-intron (ENSMUSG00000027030.15, intron 2 of 17) -12531 ENSMUSG00000027030.15 ENSMUSG00000027030 ENSMUST00000149581 Stk39 protein_coding Interval_87374 chr19 48026771 48027106 + 0 NA intron (ENSMUSG00000046585.9, intron 16 of 17) protein_coding-intron (ENSMUSG00000046585.9, intron 16 of 17) 89263 ENSMUSG00000046585.9 ENSMUSG00000046585 ENSMUST00000066308 Cfap58 protein_coding Interval_58477 chr15 34973995 34974279 + 0 NA intron (ENSMUSG00000022329.15, intron 8 of 10) protein_coding-intron (ENSMUSG00000022329.15, intron 8 of 10) -13900 ENSMUSG00000022329.15 ENSMUSG00000022329 ENSMUST00000138841 Stk3 protein_coding Interval_99072 chr2 157010269 157010512 + 0 NA Intergenic Intergenic -3816 ENSMUSG00000027635.15 ENSMUSG00000027635 ENSMUST00000154213 Dsn1 protein_coding Interval_143525 chr7 11943243 11943628 + 0 NA Intergenic Intergenic -5222 ENSMUSG00000115267.1 ENSMUSG00000115267 ENSMUST00000058772 Vmn1r76 protein_coding Interval_108554 chr3 128650902 128651179 + 0 NA intron (ENSMUSG00000106245.1, intron 2 of 4) lincRNA-intron (ENSMUSG00000106245.1, intron 2 of 4) 40053 ENSMUSG00000106245.1 ENSMUSG00000106245 ENSMUST00000199042 Gm43824 lincRNA Interval_79786 chr18 35108704 35109418 + 0 NA intron (ENSMUSG00000118380.1, intron 5 of 5) processed_transcript-intron (ENSMUSG00000118380.1, intron 5 of 5) -21438 ENSMUSG00000117727.1 ENSMUSG00000117727 ENSMUST00000238134 Gm3587 lincRNA Interval_91903 chr2 51146199 51149320 + 0 NA intron (ENSMUSG00000017144.8, intron 2 of 3) protein_coding-intron (ENSMUSG00000017144.8, intron 2 of 4) 1351 ENSMUSG00000017144.8 ENSMUSG00000017144 ENSMUST00000140864 Rnd3 protein_coding Interval_25765 chr11 51597750 51598918 + 0 NA promoter-TSS (ENSMUSG00000020359.13) protein_coding-promoter-TSS (ENSMUSG00000020359.13) -933 ENSMUSG00000020359.13 ENSMUSG00000020359 ENSMUST00000169995 Phykpl protein_coding Interval_50161 chr14 8365690 8368433 + 0 NA promoter-TSS (ENSMUSG00000114532.1) antisense-promoter-TSS (ENSMUSG00000114532.1) -379 ENSMUSG00000114532.1 ENSMUSG00000114532 ENSMUST00000225127 2610318M16Rik antisense Interval_150311 chr7 109536596 109536922 + 0 NA TTS (ENSMUSG00000031024.13) protein_coding-TTS (ENSMUSG00000031024.13) 15479 ENSMUSG00000077575.1 ENSMUSG00000077575 ENSMUST00000104387 Gm24888 snoRNA Interval_96771 chr2 128027390 128028105 + 0 NA intron (ENSMUSG00000027380.10, intron 5 of 10) protein_coding-intron (ENSMUSG00000027380.10, intron 12 of 17) -62177 ENSMUSG00000088175.1 ENSMUSG00000088175 ENSMUST00000157550 Gm23101 snRNA Interval_102135 chr3 18362774 18363004 + 0 NA intron (ENSMUSG00000102886.1, intron 5 of 5) lincRNA-intron (ENSMUSG00000102886.1, intron 5 of 5) 63579 ENSMUSG00000104801.1 ENSMUSG00000104801 ENSMUST00000197097 Gm43834 TEC Interval_76892 chr17 84766654 84767407 + 0 NA TTS (ENSMUSG00000024120.12) protein_coding-TTS (ENSMUSG00000024120.12) -17762 ENSMUSG00000117412.1 ENSMUSG00000117412 ENSMUST00000234983 Gm49979 TEC Interval_33664 chr11 117809360 117811037 + 0 NA intron (ENSMUSG00000093485.1, intron 1 of 2) protein_coding-intron (ENSMUSG00000048277.15, intron 1 of 3) 505 ENSMUSG00000048277.15 ENSMUSG00000048277 ENSMUST00000176936 Syngr2 protein_coding Interval_94957 chr2 102165629 102167285 + 0 NA intron (ENSMUSG00000048058.17, intron 1 of 5) protein_coding-intron (ENSMUSG00000048058.17, intron 1 of 5) -7833 ENSMUSG00000082328.1 ENSMUSG00000082328 ENSMUST00000119411 Gm13921 processed_pseudogene Interval_133291 chr5 151248571 151248975 + 0 NA intron (ENSMUSG00000107011.1, intron 2 of 5) protein_coding-intron (ENSMUSG00000107011.1, intron 2 of 5) -3532 ENSMUSG00000107387.1 ENSMUSG00000107387 ENSMUST00000202597 5430435K18Rik lincRNA Interval_71225 chr17 21383231 21384432 + 0 NA promoter-TSS (ENSMUSG00000062743.9) protein_coding-promoter-TSS (ENSMUSG00000062743.9) 83 ENSMUSG00000062743.9 ENSMUSG00000062743 ENSMUST00000162659 Zfp677 protein_coding Interval_36119 chr12 36041800 36042816 + 0 NA exon (ENSMUSG00000020577.17, exon 1 of 6) protein_coding-exon (ENSMUSG00000020577.17, exon 1 of 6) -2373 ENSMUSG00000020577.17 ENSMUSG00000020577 ENSMUST00000222584 Tspan13 protein_coding Interval_164460 chr9 37207670 37208610 + 0 NA promoter-TSS (ENSMUSG00000032121.9) protein_coding-promoter-TSS (ENSMUSG00000032121.9) -83 ENSMUSG00000032121.9 ENSMUSG00000032121 ENSMUST00000034632 Tmem218 protein_coding Interval_140023 chr6 113482442 113483987 + 0 NA promoter-TSS (ENSMUSG00000030284.11) protein_coding-promoter-TSS (ENSMUSG00000030284.11) -8803 ENSMUSG00000030284.11 ENSMUSG00000030284 ENSMUST00000129125 Creld1 protein_coding Interval_29892 chr11 87558351 87558620 + 0 NA Intergenic Intergenic -8168 ENSMUSG00000020486.19 ENSMUSG00000020486 ENSMUST00000143950 Septin4 protein_coding Interval_161161 chr8 117910227 117911138 + 0 NA Intergenic Intergenic 108620 ENSMUSG00000074065.4 ENSMUSG00000074065 ENSMUST00000098368 Gm10617 pseudogene Interval_171842 chr9 121681225 121682748 + 0 NA exon (ENSMUSG00000061536.13, exon 8 of 8) protein_coding-exon (ENSMUSG00000061536.13, exon 8 of 8) 11056 ENSMUSG00000061536.13 ENSMUSG00000061536 ENSMUST00000214595 Sec22c protein_coding Interval_85343 chr19 25005486 25006239 + 0 NA intron (ENSMUSG00000052085.7, intron 1 of 3) protein_coding-intron (ENSMUSG00000052085.7, intron 1 of 47) -46751 ENSMUSG00000052085.7 ENSMUSG00000052085 ENSMUST00000236576 Dock8 protein_coding Interval_107651 chr3 109466733 109467534 + 0 NA intron (ENSMUSG00000033721.16, intron 2 of 16) protein_coding-intron (ENSMUSG00000033721.16, intron 2 of 26) -180391 ENSMUSG00000033721.16 ENSMUSG00000033721 ENSMUST00000148866 Vav3 protein_coding Interval_58347 chr15 32985261 32986227 + 0 NA intron (ENSMUSG00000022261.6, intron 1 of 4) protein_coding-intron (ENSMUSG00000022261.6, intron 1 of 4) 65021 ENSMUSG00000022261.6 ENSMUSG00000022261 ENSMUST00000022871 Sdc2 protein_coding Interval_139306 chr6 98276076 98276300 + 0 NA intron (ENSMUSG00000090667.2, intron 2 of 3) protein_coding-intron (ENSMUSG00000090667.2, intron 2 of 3) 66471 ENSMUSG00000090667.2 ENSMUSG00000090667 ENSMUST00000204914 Gm765 protein_coding Interval_103744 chr3 52280507 52280778 + 0 NA intron (ENSMUSG00000044167.6, intron 1 of 2) protein_coding-intron (ENSMUSG00000044167.6, intron 1 of 2) -1599 ENSMUSG00000102844.1 ENSMUSG00000102844 ENSMUST00000193915 Gm38034 TEC Interval_102082 chr3 16783754 16783947 + 0 NA Intergenic Intergenic 39462 ENSMUSG00000088644.1 ENSMUSG00000088644 ENSMUST00000158019 Gm26485 snRNA Interval_157502 chr8 70928126 70928400 + 0 NA Intergenic Intergenic 2738 ENSMUSG00000088248.1 ENSMUSG00000088248 ENSMUST00000157623 Mir1969 miRNA Interval_163140 chr9 15602965 15603188 + 0 NA intron (ENSMUSG00000039977.16, intron 5 of 9) protein_coding-intron (ENSMUSG00000039977.16, intron 5 of 13) -16781 ENSMUSG00000111299.1 ENSMUSG00000111299 ENSMUST00000216952 4930540M03Rik antisense Interval_171170 chr9 114933170 114934735 + 0 NA promoter-TSS (ENSMUSG00000050627.13) protein_coding-promoter-TSS (ENSMUSG00000050627.13) 35 ENSMUSG00000050627.13 ENSMUSG00000050627 ENSMUST00000146266 Gpd1l protein_coding Interval_5224 chr1 86541484 86541911 + 0 NA Intergenic Intergenic 14960 ENSMUSG00000026238.14 ENSMUSG00000026238 ENSMUST00000188533 Ptma protein_coding Interval_14308 chr10 30729171 30730009 + 0 NA intron (ENSMUSG00000039697.16, intron 1 of 13) protein_coding-intron (ENSMUSG00000039697.16, intron 2 of 15) 14372 ENSMUSG00000110894.1 ENSMUSG00000110894 ENSMUST00000215097 Gm48335 TEC Interval_91819 chr2 49860771 49861712 + 0 NA intron (ENSMUSG00000026765.12, intron 3 of 4) protein_coding-intron (ENSMUSG00000026765.12, intron 2 of 9) 45639 ENSMUSG00000088825.1 ENSMUSG00000088825 ENSMUST00000158200 Gm25223 misc_RNA Interval_82337 chr18 70973559 70973880 + 0 NA Intergenic Intergenic -66068 ENSMUSG00000118271.1 ENSMUSG00000118271 ENSMUST00000236972 Gm50262 processed_pseudogene Interval_10347 chr1 169787259 169787439 + 0 NA Intergenic Intergenic 12207 ENSMUSG00000096772.1 ENSMUSG00000096772 ENSMUST00000177756 Gm22114 snRNA Interval_98350 chr2 151687480 151687739 + 0 NA Intergenic Intergenic -1270 ENSMUSG00000087035.1 ENSMUSG00000087035 ENSMUST00000137422 Tmem74bos protein_coding Interval_62414 chr15 92231769 92231972 + 0 NA intron (ENSMUSG00000055022.14, intron 4 of 23) protein_coding-intron (ENSMUSG00000055022.14, intron 4 of 23) -112489 ENSMUSG00000097068.2 ENSMUSG00000097068 ENSMUST00000181901 Gm26760 lincRNA Interval_17673 chr10 78964165 78964490 + 0 NA intron (ENSMUSG00000042774.8, intron 1 of 1) protein_coding-intron (ENSMUSG00000042774.8, intron 1 of 2) 1018 ENSMUSG00000042774.8 ENSMUSG00000042774 ENSMUST00000204849 Olfr1353 protein_coding Interval_140191 chr6 115178771 115179232 + 0 NA intron (ENSMUSG00000009394.13, intron 1 of 10) protein_coding-intron (ENSMUSG00000009394.13, intron 1 of 12) -19070 ENSMUSG00000107489.1 ENSMUSG00000107489 ENSMUST00000203228 Gm18325 processed_pseudogene Interval_97539 chr2 139539179 139539362 + 0 NA intron (ENSMUSG00000039092.9, intron 2 of 11) protein_coding-intron (ENSMUSG00000039092.9, intron 3 of 12) 45357 ENSMUSG00000039092.9 ENSMUSG00000039092 ENSMUST00000047370 Sptlc3 protein_coding Interval_88029 chr19 58118637 58119099 + 0 NA intron (ENSMUSG00000054843.9, intron 28 of 28) protein_coding-intron (ENSMUSG00000054843.9, intron 28 of 28) -22837 ENSMUSG00000117871.1 ENSMUSG00000117871 ENSMUST00000235250 Gm50287 lincRNA Interval_156351 chr8 47619711 47620895 + 0 NA Intergenic Intergenic 7797 ENSMUSG00000109960.1 ENSMUSG00000109960 ENSMUST00000210283 Gm45575 processed_pseudogene Interval_126565 chr5 90308902 90309572 + 0 NA intron (ENSMUSG00000055204.15, intron 1 of 26) protein_coding-intron (ENSMUSG00000055204.15, intron 1 of 33) 56948 ENSMUSG00000055204.15 ENSMUSG00000055204 ENSMUST00000202226 Ankrd17 protein_coding Interval_34977 chr12 16149497 16149798 + 0 NA Intergenic Intergenic -5454 ENSMUSG00000113142.1 ENSMUSG00000113142 ENSMUST00000221780 Gm18114 processed_pseudogene Interval_37967 chr12 73476569 73476878 + 0 NA Intergenic Intergenic -19816 ENSMUSG00000114178.1 ENSMUSG00000114178 ENSMUST00000221516 Gm48656 lincRNA Interval_75774 chr17 71254666 71254905 + 0 NA TTS (ENSMUSG00000024053.11) protein_coding-TTS (ENSMUSG00000024053.11) 55496 ENSMUSG00000024053.11 ENSMUSG00000024053 ENSMUST00000233659 Emilin2 protein_coding Interval_35695 chr12 27906756 27907005 + 0 NA Intergenic Intergenic -73717 ENSMUSG00000113616.1 ENSMUSG00000113616 ENSMUST00000223144 Gm45941 lincRNA Interval_29997 chr11 88612846 88614479 + 0 NA intron (ENSMUSG00000069769.13, intron 5 of 5) protein_coding-intron (ENSMUSG00000069769.13, intron 5 of 13) -23515 ENSMUSG00000069769.13 ENSMUSG00000069769 ENSMUST00000126293 Msi2 protein_coding Interval_2244 chr1 37318102 37318319 + 0 NA intron (ENSMUSG00000026113.17, intron 1 of 25) protein_coding-intron (ENSMUSG00000026113.17, intron 1 of 25) 13294 ENSMUSG00000102879.1 ENSMUSG00000102879 ENSMUST00000192652 Gm37135 TEC Interval_41941 chr13 4924166 4924462 + 0 NA intron (ENSMUSG00000113866.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000113866.1, intron 1 of 1) 18738 ENSMUSG00000113866.1 ENSMUSG00000113866 ENSMUST00000222131 Gm47450 lincRNA Interval_49730 chr13 114303337 114305071 + 0 NA intron (ENSMUSG00000021764.8, intron 3 of 3) protein_coding-intron (ENSMUSG00000021764.8, intron 4 of 4) -19823 ENSMUSG00000114707.1 ENSMUSG00000114707 ENSMUST00000224003 Gm47558 TEC Interval_93147 chr2 70618882 70620469 + 0 NA promoter-TSS (ENSMUSG00000086699.3) processed_pseudogene-promoter-TSS (ENSMUSG00000086699.3) -799 ENSMUSG00000086699.3 ENSMUSG00000086699 ENSMUST00000153501 Gm16510 processed_pseudogene Interval_139723 chr6 108110385 108110945 + 0 NA intron (ENSMUSG00000030101.15, intron 4 of 4) protein_coding-intron (ENSMUSG00000030101.15, intron 8 of 8) 29844 ENSMUSG00000091845.1 ENSMUSG00000091845 ENSMUST00000025040 Rpl36-ps12 processed_pseudogene Interval_115800 chr4 104625659 104626081 + 0 NA intron (ENSMUSG00000028519.16, intron 2 of 6) protein_coding-intron (ENSMUSG00000028519.16, intron 3 of 5) 20574 ENSMUSG00000028519.16 ENSMUSG00000028519 ENSMUST00000149672 Dab1 protein_coding Interval_59712 chr15 58811235 58811512 + 0 NA intron (ENSMUSG00000062373.8, intron 1 of 6) protein_coding-intron (ENSMUSG00000062373.8, intron 1 of 6) 8105 ENSMUSG00000065049.1 ENSMUSG00000065049 ENSMUST00000083115 Gm24041 snRNA Interval_84315 chr19 10033088 10035245 + 0 NA TTS (ENSMUSG00000024663.20) protein_coding-TTS (ENSMUSG00000024663.20) -7566 ENSMUSG00000024664.5 ENSMUSG00000024664 ENSMUST00000237226 Fads3 protein_coding Interval_63571 chr15 102110809 102111277 + 0 NA intron (ENSMUSG00000037003.16, intron 16 of 27) protein_coding-intron (ENSMUSG00000037003.16, intron 17 of 28) 6618 ENSMUSG00000037003.16 ENSMUSG00000037003 ENSMUST00000229800 Tns2 protein_coding Interval_90635 chr2 31593456 31593690 + 0 NA intron (ENSMUSG00000026843.15, intron 3 of 5) protein_coding-intron (ENSMUSG00000026843.15, intron 3 of 17) -18848 ENSMUSG00000098904.1 ENSMUSG00000098904 ENSMUST00000183343 Mir6998 miRNA Interval_155766 chr8 37071365 37072820 + 0 NA Intergenic Intergenic 18217 ENSMUSG00000109817.1 ENSMUSG00000109817 ENSMUST00000211556 Gm10683 TEC Interval_35266 chr12 19244032 19245001 + 0 NA Intergenic Intergenic 26434 ENSMUSG00000113110.1 ENSMUSG00000113110 ENSMUST00000221548 Gm48528 processed_pseudogene Interval_60994 chr15 78581261 78582196 + 0 NA promoter-TSS (ENSMUSG00000116097.1) lincRNA-promoter-TSS (ENSMUSG00000116097.1) -112 ENSMUSG00000116097.1 ENSMUSG00000116097 ENSMUST00000229702 Gm36738 lincRNA Interval_130079 chr5 124119941 124121807 + 0 NA exon (ENSMUSG00000029406.15, exon 8 of 8) protein_coding-exon (ENSMUSG00000029406.15, exon 8 of 8) 3563 ENSMUSG00000029404.15 ENSMUSG00000029404 ENSMUST00000196401 Arl6ip4 protein_coding Interval_165599 chr9 50129826 50130574 + 0 NA Intergenic Intergenic 56845 ENSMUSG00000098012.1 ENSMUSG00000098012 ENSMUST00000182240 Gm8907 processed_pseudogene Interval_124703 chr5 53442729 53443225 + 0 NA Intergenic Intergenic 24404 ENSMUSG00000088646.1 ENSMUSG00000088646 ENSMUST00000158021 Gm26486 rRNA Interval_100333 chr2 168447334 168447569 + 0 NA Intergenic Intergenic -28877 ENSMUSG00000082239.1 ENSMUSG00000082239 ENSMUST00000119539 Gm14234 processed_pseudogene Interval_7554 chr1 132190004 132192513 + 0 NA promoter-TSS (ENSMUSG00000079330.9) protein_coding-promoter-TSS (ENSMUSG00000079330.9) -199 ENSMUSG00000118219.1 ENSMUSG00000118219 ENSMUST00000188175 Gm29695 protein_coding Interval_654 chr1 9610286 9610821 + 0 NA intron (ENSMUSG00000067879.3, intron 2 of 5) protein_coding-intron (ENSMUSG00000067879.3, intron 2 of 5) 9354 ENSMUSG00000067879.3 ENSMUSG00000067879 ENSMUST00000088666 Vxn protein_coding Interval_65235 chr16 20731980 20734566 + 0 NA promoter-TSS (ENSMUSG00000006958.14) protein_coding-promoter-TSS (ENSMUSG00000006958.14) 144 ENSMUSG00000006958.14 ENSMUSG00000006958 ENSMUST00000151150 Chrd protein_coding Interval_87216 chr19 46981542 46981971 + 0 NA intron (ENSMUSG00000025041.17, intron 1 of 17) protein_coding-intron (ENSMUSG00000025041.17, intron 1 of 17) -19448 ENSMUSG00000025041.17 ENSMUSG00000025041 ENSMUST00000237658 Nt5c2 protein_coding Interval_91940 chr2 51830256 51831059 + 0 NA Intergenic Intergenic -12088 ENSMUSG00000081484.1 ENSMUSG00000081484 ENSMUST00000119772 Gm13492 processed_pseudogene Interval_25920 chr11 52602162 52603350 + 0 NA Intergenic Intergenic -115446 ENSMUSG00000083129.1 ENSMUSG00000083129 ENSMUST00000118245 Gm12210 processed_pseudogene Interval_313 chr1 3545867 3546088 + 0 NA intron (ENSMUSG00000051951.5, intron 1 of 2) protein_coding-intron (ENSMUSG00000051951.5, intron 1 of 2) 14182 ENSMUSG00000103147.1 ENSMUSG00000103147 ENSMUST00000192183 Gm7341 processed_pseudogene Interval_168331 chr9 78787631 78788268 + 0 NA Intergenic Intergenic -20417 ENSMUSG00000110809.1 ENSMUSG00000110809 ENSMUST00000215294 Gm46138 processed_pseudogene Interval_26034 chr11 53598030 53600353 + 0 NA intron (ENSMUSG00000018395.19, intron 17 of 17) protein_coding-intron (ENSMUSG00000018395.19, intron 16 of 16) 18147 ENSMUSG00000000869.12 ENSMUSG00000000869 ENSMUST00000000889 Il4 protein_coding Interval_60720 chr15 76350494 76352003 + 0 NA promoter-TSS (ENSMUSG00000022552.16) protein_coding-promoter-TSS (ENSMUSG00000022552.16) -61 ENSMUSG00000022553.16 ENSMUSG00000022553 ENSMUST00000161072 Maf1 protein_coding Interval_97028 chr2 130642236 130643256 + 0 NA promoter-TSS (ENSMUSG00000037703.14) protein_coding-promoter-TSS (ENSMUSG00000037703.14) -4651 ENSMUSG00000037703.14 ENSMUSG00000037703 ENSMUST00000045761 Lzts3 protein_coding Interval_1883 chr1 34280611 34280867 + 0 NA intron (ENSMUSG00000026131.20, intron 67 of 83) protein_coding-intron (ENSMUSG00000026131.20, intron 81 of 97) -9611 ENSMUSG00000103001.1 ENSMUSG00000103001 ENSMUST00000194920 A930005N03Rik TEC Interval_80161 chr18 37941511 37941795 + 0 NA exon (ENSMUSG00000024454.16, exon 7 of 8) protein_coding-exon (ENSMUSG00000024454.16, exon 7 of 8) 13265 ENSMUSG00000024454.16 ENSMUSG00000024454 ENSMUST00000235700 Hdac3 protein_coding Interval_83488 chr18 87134310 87135239 + 0 NA Intergenic Intergenic -97158 ENSMUSG00000118250.1 ENSMUSG00000118250 ENSMUST00000236658 Gm5234 processed_pseudogene Interval_87797 chr19 55923747 55924527 + 0 NA exon (ENSMUSG00000024985.20, exon 11 of 11) protein_coding-exon (ENSMUSG00000024985.20, exon 11 of 11) 82465 ENSMUSG00000099746.1 ENSMUSG00000099746 ENSMUST00000190974 Ppnr sense_intronic Interval_32658 chr11 109472319 109475114 + 0 NA promoter-TSS (ENSMUSG00000041920.14) protein_coding-promoter-TSS (ENSMUSG00000041920.14) 342 ENSMUSG00000020604.13 ENSMUSG00000020604 ENSMUST00000106696 Arsg protein_coding Interval_121692 chr5 5343956 5344359 + 0 NA intron (ENSMUSG00000028926.15, intron 2 of 2) protein_coding-intron (ENSMUSG00000028926.15, intron 2 of 14) -32534 ENSMUSG00000104867.1 ENSMUSG00000104867 ENSMUST00000198817 Gm43728 sense_intronic Interval_57897 chr15 25124058 25124628 + 0 NA intron (ENSMUSG00000115174.1, intron 2 of 6) lincRNA-intron (ENSMUSG00000115174.1, intron 2 of 6) 4061 ENSMUSG00000115174.1 ENSMUSG00000115174 ENSMUST00000226274 Gm35996 lincRNA Interval_143286 chr7 4961336 4961718 + 0 NA intron (ENSMUSG00000030433.15, intron 2 of 2) protein_coding-intron (ENSMUSG00000030433.15, intron 2 of 3) 2879 ENSMUSG00000030433.15 ENSMUSG00000030433 ENSMUST00000182837 Sbk2 protein_coding Interval_322 chr1 3956078 3956597 + 0 NA intron (ENSMUSG00000102343.1, intron 2 of 2) lincRNA-intron (ENSMUSG00000102343.1, intron 2 of 2) 29878 ENSMUSG00000102343.1 ENSMUSG00000102343 ENSMUST00000192427 Gm37381 lincRNA Interval_36916 chr12 55325233 55326016 + 0 NA intron (ENSMUSG00000021023.14, intron 3 of 6) protein_coding-intron (ENSMUSG00000021023.14, intron 3 of 6) 26047 ENSMUSG00000021023.14 ENSMUSG00000021023 ENSMUST00000183654 Prorp protein_coding Interval_45382 chr13 54792683 54793109 + 0 NA promoter-TSS (ENSMUSG00000025875.14) protein_coding-promoter-TSS (ENSMUSG00000025875.14) 3251 ENSMUSG00000025875.14 ENSMUSG00000025875 ENSMUST00000139574 Tspan17 protein_coding Interval_120650 chr4 149891666 149891951 + 0 NA Intergenic Intergenic -12198 ENSMUSG00000086767.1 ENSMUSG00000086767 ENSMUST00000146532 Gm13070 antisense Interval_88053 chr19 58453153 58456712 + 0 NA promoter-TSS (ENSMUSG00000025089.15) protein_coding-promoter-TSS (ENSMUSG00000025089.15) -466 ENSMUSG00000025089.15 ENSMUSG00000025089 ENSMUST00000135730 Gfra1 protein_coding Interval_147558 chr7 68265454 68265837 + 0 NA TTS (ENSMUSG00000086628.7) antisense-TTS (ENSMUSG00000086628.7) -1412 ENSMUSG00000030553.3 ENSMUSG00000030553 ENSMUST00000207874 Pgpep1l protein_coding Interval_117820 chr4 126409662 126409887 + 0 NA intron (ENSMUSG00000028842.15, intron 2 of 2) protein_coding-intron (ENSMUSG00000028842.15, intron 2 of 18) -5439 ENSMUSG00000028842.15 ENSMUSG00000028842 ENSMUST00000123233 Ago3 protein_coding Interval_76617 chr17 82584043 82584335 + 0 NA Intergenic Intergenic 44929 ENSMUSG00000073371.4 ENSMUSG00000073371 ENSMUST00000097278 Gm6594 processed_pseudogene Interval_169175 chr9 95120184 95121853 + 0 NA promoter-TSS (ENSMUSG00000031129.9) protein_coding-promoter-TSS (ENSMUSG00000031129.9) -128334 ENSMUSG00000111087.1 ENSMUSG00000111087 ENSMUST00000214362 Gm47168 processed_pseudogene Interval_63018 chr15 98668014 98668666 + 0 NA TTS (ENSMUSG00000054855.13) protein_coding-TTS (ENSMUSG00000054855.13) -5446 ENSMUSG00000003360.15 ENSMUSG00000003360 ENSMUST00000228973 Ddx23 protein_coding Interval_78606 chr18 15120745 15121130 + 0 NA intron (ENSMUSG00000036225.15, intron 1 of 4) protein_coding-intron (ENSMUSG00000036225.15, intron 1 of 4) -56839 ENSMUSG00000036225.15 ENSMUSG00000036225 ENSMUST00000234685 Kctd1 protein_coding Interval_60399 chr15 73504025 73504766 + 0 NA Intergenic Intergenic -7098 ENSMUSG00000115885.1 ENSMUSG00000115885 ENSMUST00000230637 Gm19811 processed_pseudogene Interval_37013 chr12 56374485 56374808 + 0 NA promoter-TSS (ENSMUSG00000066491.4) processed_pseudogene-promoter-TSS (ENSMUSG00000066491.4) -823 ENSMUSG00000066491.4 ENSMUSG00000066491 ENSMUST00000149263 Cox6c2 processed_pseudogene Interval_36368 chr12 42341115 42341338 + 0 NA Intergenic Intergenic 59510 ENSMUSG00000093214.1 ENSMUSG00000093214 ENSMUST00000175473 Gm25248 miRNA Interval_81796 chr18 64832577 64833341 + 0 NA Intergenic Intergenic -26463 ENSMUSG00000118045.1 ENSMUSG00000118045 ENSMUST00000237689 Gm29860 lincRNA Interval_6974 chr1 121473845 121474056 + 0 NA intron (ENSMUSG00000026339.18, intron 11 of 23) protein_coding-intron (ENSMUSG00000026339.18, intron 11 of 23) 19253 ENSMUSG00000085857.1 ENSMUSG00000085857 ENSMUST00000152863 Gm15392 antisense Interval_4941 chr1 82838984 82840444 + 0 NA promoter-TSS (ENSMUSG00000026159.13) protein_coding-promoter-TSS (ENSMUSG00000026159.13) 45 ENSMUSG00000026159.13 ENSMUSG00000026159 ENSMUST00000186043 Agfg1 protein_coding Interval_64589 chr16 13540951 13541830 + 0 NA intron (ENSMUSG00000022685.9, intron 23 of 23) protein_coding-intron (ENSMUSG00000022685.9, intron 22 of 23) -9839 ENSMUSG00000077488.1 ENSMUSG00000077488 ENSMUST00000104300 Gm25276 snoRNA Interval_144224 chr7 23314561 23314749 + 0 NA intron (ENSMUSG00000045693.8, intron 1 of 8) protein_coding-intron (ENSMUSG00000045693.8, intron 1 of 8) 31630 ENSMUSG00000109425.1 ENSMUSG00000109425 ENSMUST00000208272 Gm18471 processed_pseudogene Interval_163562 chr9 22196140 22197050 + 0 NA promoter-TSS (ENSMUSG00000074472.10) protein_coding-promoter-TSS (ENSMUSG00000074472.10) -7898 ENSMUSG00000110757.1 ENSMUSG00000110757 ENSMUST00000217297 Gm18228 unprocessed_pseudogene Interval_13940 chr10 24848565 24849299 + 0 NA Intergenic Intergenic -12760 ENSMUSG00000019989.8 ENSMUSG00000019989 ENSMUST00000220209 Enpp3 protein_coding Interval_140728 chr6 120900329 120900623 + 0 NA intron (ENSMUSG00000004446.12, intron 2 of 6) protein_coding-intron (ENSMUSG00000004446.12, intron 2 of 5) -2908 ENSMUSG00000004446.12 ENSMUSG00000004446 ENSMUST00000125915 Bid protein_coding Interval_90022 chr2 27380932 27381286 + 0 NA intron (ENSMUSG00000009621.18, intron 1 of 29) protein_coding-intron (ENSMUSG00000009621.18, intron 2 of 27) -20743 ENSMUSG00000076364.1 ENSMUSG00000076364 ENSMUST00000102409 Gm24049 miRNA Interval_8032 chr1 135313294 135314098 + 0 NA promoter-TSS (ENSMUSG00000062580.9) protein_coding-promoter-TSS (ENSMUSG00000062580.9) -3857 ENSMUSG00000062580.9 ENSMUSG00000062580 ENSMUST00000125454 Timm17a protein_coding Interval_56742 chr14 121797082 121798880 + 0 NA promoter-TSS (ENSMUSG00000025558.19) protein_coding-promoter-TSS (ENSMUSG00000025558.19) -33033 ENSMUSG00000115443.1 ENSMUSG00000115443 ENSMUST00000228932 Gm9395 processed_pseudogene Interval_172190 chrX 8614382 8614586 + 0 NA Intergenic Intergenic 10064 ENSMUSG00000080897.1 ENSMUSG00000080897 ENSMUST00000121647 Gm14500 unprocessed_pseudogene Interval_30892 chr11 97088170 97088574 + 0 NA Intergenic Intergenic -8561 ENSMUSG00000084068.1 ENSMUSG00000084068 ENSMUST00000119956 Gm11573 processed_pseudogene Interval_116920 chr4 118228845 118230182 + 0 NA intron (ENSMUSG00000033295.14, intron 4 of 24) protein_coding-intron (ENSMUSG00000033295.14, intron 13 of 32) -18949 ENSMUSG00000098596.1 ENSMUSG00000098596 ENSMUST00000184953 Mir7226 miRNA Interval_9562 chr1 159418680 159420182 + 0 NA Intergenic Intergenic -9529 ENSMUSG00000103389.1 ENSMUSG00000103389 ENSMUST00000193072 Gm37757 processed_pseudogene Interval_149946 chr7 103353899 103354348 + 0 NA Intergenic Intergenic -4454 ENSMUSG00000045540.5 ENSMUSG00000045540 ENSMUST00000056222 Olfr600 protein_coding Interval_169686 chr9 100382409 100382756 + 0 NA Intergenic Intergenic 9269 ENSMUSG00000111258.1 ENSMUSG00000111258 ENSMUST00000213192 Gm34397 lincRNA Interval_142758 chr6 145377890 145379617 + 0 NA intron (ENSMUSG00000054966.13, intron 8 of 10) protein_coding-intron (ENSMUSG00000054966.13, intron 8 of 10) -8844 ENSMUSG00000087204.1 ENSMUSG00000087204 ENSMUST00000148424 1700073E17Rik transcribed_processed_pseudogene Interval_60169 chr15 66911007 66911497 + 0 NA intron (ENSMUSG00000005124.10, intron 2 of 4) protein_coding-intron (ENSMUSG00000005124.10, intron 2 of 4) 1988 ENSMUSG00000005124.10 ENSMUSG00000005124 ENSMUST00000133863 Ccn4 protein_coding Interval_12797 chr10 5549996 5551117 + 0 NA exon (ENSMUSG00000096054.3, exon 1 of 32) protein_coding-exon (ENSMUSG00000096054.3, exon 1 of 32) -43219 ENSMUSG00000046916.9 ENSMUSG00000046916 ENSMUST00000051809 Myct1 protein_coding Interval_152361 chr7 132391807 132392447 + 0 NA intron (ENSMUSG00000030849.18, intron 2 of 6) protein_coding-intron (ENSMUSG00000030849.18, intron 2 of 6) -26264 ENSMUSG00000109137.1 ENSMUSG00000109137 ENSMUST00000207222 Gm34908 lincRNA Interval_22857 chr11 16809402 16810056 + 0 NA intron (ENSMUSG00000020122.16, intron 1 of 15) protein_coding-intron (ENSMUSG00000020122.16, intron 1 of 27) 20973 ENSMUSG00000085091.1 ENSMUSG00000085091 ENSMUST00000150329 Egfros antisense Interval_10034 chr1 165247564 165247990 + 0 NA Intergenic Intergenic -11264 ENSMUSG00000040843.10 ENSMUSG00000040843 ENSMUST00000156102 Tiprl protein_coding Interval_26544 chr11 58726579 58729108 + 0 NA Intergenic Intergenic -3829 ENSMUSG00000108265.2 ENSMUSG00000108265 ENSMUST00000189911 Olfr318 protein_coding Interval_97868 chr2 144588653 144588971 + 0 NA intron (ENSMUSG00000027429.16, intron 16 of 16) protein_coding-intron (ENSMUSG00000027429.16, intron 19 of 19) -5242 ENSMUSG00000074754.4 ENSMUSG00000074754 ENSMUST00000136628 Smim26 protein_coding Interval_142731 chr6 145195198 145195391 + 0 NA intron (ENSMUSG00000043541.16, intron 6 of 16) protein_coding-intron (ENSMUSG00000043541.16, intron 6 of 15) 13019 ENSMUSG00000086863.1 ENSMUSG00000086863 ENSMUST00000141307 Gm15543 antisense Interval_75288 chr17 65713863 65714170 + 0 NA intron (ENSMUSG00000056515.9, intron 3 of 6) protein_coding-intron (ENSMUSG00000056515.9, intron 3 of 6) -52438 ENSMUSG00000117114.1 ENSMUSG00000117114 ENSMUST00000233942 Gm49867 processed_pseudogene Interval_7781 chr1 133641748 133642066 + 0 NA intron (ENSMUSG00000102976.6, intron 6 of 8) protein_coding-intron (ENSMUSG00000116275.1, intron 4 of 16) -2737 ENSMUSG00000102976.6 ENSMUSG00000102976 ENSMUST00000192775 Zc3h11a protein_coding Interval_46617 chr13 67626654 67627119 + 0 NA intron (ENSMUSG00000021510.11, intron 1 of 3) protein_coding-intron (ENSMUSG00000021510.11, intron 1 of 3) 403 ENSMUSG00000021510.11 ENSMUSG00000021510 ENSMUST00000225608 Zfp729a protein_coding Interval_34885 chr12 12964177 12964743 + 0 NA Intergenic Intergenic -14925 ENSMUSG00000113953.1 ENSMUSG00000113953 ENSMUST00000221337 Gm48201 processed_pseudogene Interval_19618 chr10 105834581 105835394 + 0 NA intron (ENSMUSG00000036009.16, intron 1 of 12) protein_coding-intron (ENSMUSG00000036009.16, intron 1 of 11) 6393 ENSMUSG00000036009.16 ENSMUSG00000036009 ENSMUST00000176830 Mettl25 protein_coding Interval_116552 chr4 115543515 115543708 + 0 NA intron (ENSMUSG00000081006.1, intron 2 of 2) unprocessed_pseudogene-intron (ENSMUSG00000081006.1, intron 2 of 2) 1453 ENSMUSG00000081006.1 ENSMUSG00000081006 ENSMUST00000118753 Cyp4b1-ps1 unprocessed_pseudogene Interval_130214 chr5 124992641 124993058 + 0 NA Intergenic Intergenic -10626 ENSMUSG00000037962.7 ENSMUSG00000037962 ENSMUST00000145946 Rflna protein_coding Interval_3073 chr1 52918424 52919617 + 0 NA intron (ENSMUSG00000041426.12, intron 13 of 13) protein_coding-intron (ENSMUSG00000041426.12, intron 13 of 13) -45022 ENSMUSG00000089802.1 ENSMUSG00000089802 ENSMUST00000162523 Gm16107 processed_pseudogene Interval_169124 chr9 92950346 92950604 + 0 NA Intergenic Intergenic -25751 ENSMUSG00000101309.1 ENSMUSG00000101309 ENSMUST00000185205 Gm29397 processed_pseudogene Interval_9904 chr1 163994285 163995576 + 0 NA promoter-TSS (ENSMUSG00000041396.13) protein_coding-promoter-TSS (ENSMUSG00000041396.13) 41 ENSMUSG00000041396.13 ENSMUSG00000041396 ENSMUST00000111490 Mettl18 protein_coding Interval_164822 chr9 42236134 42236359 + 0 NA Intergenic Intergenic -27033 ENSMUSG00000111767.1 ENSMUSG00000111767 ENSMUST00000216643 4930546K05Rik lincRNA Interval_142678 chr6 144982313 144982591 + 0 NA Intergenic Intergenic 55736 ENSMUSG00000088867.1 ENSMUSG00000088867 ENSMUST00000158242 Gm23071 rRNA Interval_129142 chr5 117748805 117749784 + 0 NA intron (ENSMUSG00000061578.8, intron 17 of 20) protein_coding-intron (ENSMUSG00000061578.8, intron 17 of 20) -117825 ENSMUSG00000029361.18 ENSMUSG00000029361 ENSMUST00000138554 Nos1 protein_coding Interval_167703 chr9 72161528 72161871 + 0 NA Intergenic Intergenic 13259 ENSMUSG00000061390.6 ENSMUSG00000061390 ENSMUST00000183770 Uba52-ps processed_pseudogene Interval_159700 chr8 98377356 98378362 + 0 NA Intergenic Intergenic -153196 ENSMUSG00000110194.1 ENSMUSG00000110194 ENSMUST00000210793 Gm7192 processed_pseudogene Interval_58811 chr15 38237681 38238760 + 0 NA promoter-TSS (ENSMUSG00000096567.1) miRNA-promoter-TSS (ENSMUSG00000096567.1) 111 ENSMUSG00000115525.1 ENSMUSG00000115525 ENSMUST00000228654 Gm5213 processed_pseudogene Interval_33691 chr11 117934003 117934898 + 0 NA Intergenic Intergenic 12545 ENSMUSG00000082562.1 ENSMUSG00000082562 ENSMUST00000121028 Gm11726 processed_pseudogene Interval_97892 chr2 144958594 144958799 + 0 NA Intergenic Intergenic -27018 ENSMUSG00000082858.1 ENSMUSG00000082858 ENSMUST00000119843 Gm11746 processed_pseudogene Interval_104566 chr3 68301594 68301854 + 0 NA intron (ENSMUSG00000027777.15, intron 1 of 6) protein_coding-intron (ENSMUSG00000027777.15, intron 1 of 7) -31472 ENSMUSG00000102846.1 ENSMUSG00000102846 ENSMUST00000193165 Gm10292 processed_pseudogene Interval_142713 chr6 145104495 145104804 + 0 NA Intergenic Intergenic 40748 ENSMUSG00000107420.1 ENSMUSG00000107420 ENSMUST00000204561 Gm43910 TEC Interval_116586 chr4 115897613 115899254 + 0 NA exon (ENSMUSG00000034185.9, exon 2 of 2) protein_coding-exon (ENSMUSG00000034185.9, exon 2 of 2) 7767 ENSMUSG00000034185.9 ENSMUSG00000034185 ENSMUST00000165938 6430628N08Rik protein_coding Interval_6633 chr1 118422758 118423414 + 0 NA intron (ENSMUSG00000064302.13, intron 2 of 31) protein_coding-intron (ENSMUSG00000064302.13, intron 2 of 39) 30399 ENSMUSG00000077257.1 ENSMUSG00000077257 ENSMUST00000104069 Gm26080 snoRNA Interval_156139 chr8 45050597 45052745 + 0 NA TTS (ENSMUSG00000070047.14) protein_coding-TTS (ENSMUSG00000070047.14) 10782 ENSMUSG00000066158.7 ENSMUSG00000066158 ENSMUST00000166107 AY512931 lincRNA Interval_9817 chr1 162646333 162646529 + 0 NA TTS (ENSMUSG00000091060.2) protein_coding-TTS (ENSMUSG00000091060.2) 7276 ENSMUSG00000026697.10 ENSMUSG00000026697 ENSMUST00000028020 Myoc protein_coding Interval_151200 chr7 119512656 119513556 + 0 NA exon (ENSMUSG00000098014.1, exon 1 of 1) sense_intronic-exon (ENSMUSG00000098014.1, exon 1 of 1) 1196 ENSMUSG00000098014.1 ENSMUSG00000098014 ENSMUST00000182878 Gm26967 sense_intronic Interval_10306 chr1 168375156 168375511 + 0 NA intron (ENSMUSG00000052534.15, intron 2 of 7) protein_coding-intron (ENSMUSG00000052534.15, intron 2 of 6) -24525 ENSMUSG00000102594.1 ENSMUSG00000102594 ENSMUST00000193594 Gm38381 TEC Interval_86432 chr19 40434125 40435487 + 0 NA intron (ENSMUSG00000025006.18, intron 1 of 21) protein_coding-intron (ENSMUSG00000025006.18, intron 2 of 3) -57932 ENSMUSG00000025006.18 ENSMUSG00000025006 ENSMUST00000225293 Sorbs1 protein_coding Interval_140365 chr6 117249188 117250164 + 0 NA Intergenic Intergenic -35610 ENSMUSG00000090549.2 ENSMUSG00000090549 ENSMUST00000170447 Rpl28-ps4 processed_pseudogene Interval_61374 chr15 81185082 81185431 + 0 NA intron (ENSMUSG00000042292.18, intron 1 of 14) protein_coding-intron (ENSMUSG00000042292.18, intron 1 of 3) -5597 ENSMUSG00000047938.7 ENSMUSG00000047938 ENSMUST00000138715 4930483J18Rik processed_transcript Interval_153995 chr8 11727335 11729081 + 0 NA promoter-TSS (ENSMUSG00000031511.16) protein_coding-promoter-TSS (ENSMUSG00000031511.16) -10413 ENSMUSG00000110394.1 ENSMUSG00000110394 ENSMUST00000209225 Gm18991 processed_pseudogene Interval_115168 chr4 92903308 92904143 + 0 NA Intergenic Intergenic -37143 ENSMUSG00000088914.1 ENSMUSG00000088914 ENSMUST00000158289 Gm22605 snRNA Interval_153588 chr8 3551514 3553028 + 0 NA Intergenic Intergenic 15485 ENSMUSG00000004565.15 ENSMUSG00000004565 ENSMUST00000208691 Pnpla6 protein_coding Interval_171193 chr9 115107280 115107948 + 0 NA intron (ENSMUSG00000040875.12, intron 1 of 4) protein_coding-intron (ENSMUSG00000040875.12, intron 1 of 9) 78444 ENSMUSG00000098127.1 ENSMUSG00000098127 ENSMUST00000183244 Gm4665 antisense Interval_5500 chr1 89308903 89309768 + 0 NA intron (ENSMUSG00000101288.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000101288.1, intron 1 of 2) 48809 ENSMUSG00000101288.1 ENSMUSG00000101288 ENSMUST00000190308 Gm28342 lincRNA Interval_134797 chr6 31615649 31615850 + 0 NA intron (ENSMUSG00000086804.8, intron 2 of 2) lincRNA-intron (ENSMUSG00000086804.8, intron 1 of 2) 40782 ENSMUSG00000086732.1 ENSMUSG00000086732 ENSMUST00000150540 Gm6117 lincRNA Interval_10197 chr1 167053597 167054374 + 0 NA intron (ENSMUSG00000060568.14, intron 1 of 2) protein_coding-intron (ENSMUSG00000060568.14, intron 1 of 2) 52568 ENSMUSG00000060568.14 ENSMUSG00000060568 ENSMUST00000128373 Fam78b protein_coding Interval_116058 chr4 107313794 107315191 + 0 NA promoter-TSS (ENSMUSG00000057375.13) protein_coding-promoter-TSS (ENSMUSG00000057375.13) -640 ENSMUSG00000057375.13 ENSMUSG00000057375 ENSMUST00000143106 Yipf1 protein_coding Interval_45877 chr13 58693993 58694325 + 0 NA Intergenic Intergenic -25320 ENSMUSG00000114380.1 ENSMUSG00000114380 ENSMUST00000225253 Gm47942 processed_pseudogene Interval_60767 chr15 76625015 76626564 + 0 NA TTS (ENSMUSG00000059323.14) protein_coding-TTS (ENSMUSG00000059323.14) 280 ENSMUSG00000115987.1 ENSMUSG00000115987 ENSMUST00000078803 Vps28 protein_coding Interval_91181 chr2 35702688 35703060 + 0 NA intron (ENSMUSG00000026883.17, intron 1 of 13) protein_coding-intron (ENSMUSG00000026883.17, intron 1 of 13) -7453 ENSMUSG00000026883.17 ENSMUSG00000026883 ENSMUST00000156669 Dab2ip protein_coding Interval_63601 chr15 102278846 102280350 + 0 NA exon (ENSMUSG00000045665.5, exon 1 of 2) protein_coding-exon (ENSMUSG00000045665.5, exon 1 of 2) 144 ENSMUSG00000045665.5 ENSMUSG00000045665 ENSMUST00000051341 Mfsd5 protein_coding Interval_26413 chr11 57719051 57720500 + 0 NA intron (ENSMUSG00000020520.14, intron 1 of 2) protein_coding-intron (ENSMUSG00000020520.14, intron 1 of 11) -21525 ENSMUSG00000077155.1 ENSMUSG00000077155 ENSMUST00000103967 Gm24582 snRNA Interval_33055 chr11 113950148 113951380 + 0 NA intron (ENSMUSG00000041592.16, intron 1 of 11) protein_coding-intron (ENSMUSG00000041592.16, intron 1 of 44) -140341 ENSMUSG00000041592.16 ENSMUSG00000041592 ENSMUST00000144301 Sdk2 protein_coding Interval_35175 chr12 17789493 17789749 + 0 NA intron (ENSMUSG00000071379.2, intron 4 of 4) protein_coding-intron (ENSMUSG00000071379.2, intron 3 of 3) 61395 ENSMUSG00000071379.2 ENSMUSG00000071379 ENSMUST00000222944 Hpcal1 protein_coding Interval_135284 chr6 38055574 38055775 + 0 NA promoter-TSS (ENSMUSG00000038600.12) protein_coding-promoter-TSS (ENSMUSG00000038600.12) 27698 ENSMUSG00000038600.12 ENSMUSG00000038600 ENSMUST00000130816 Atp6v0a4 protein_coding Interval_133513 chr6 6092688 6093275 + 0 NA intron (ENSMUSG00000015112.15, intron 1 of 2) protein_coding-intron (ENSMUSG00000015112.15, intron 13 of 17) 80970 ENSMUSG00000015112.15 ENSMUSG00000015112 ENSMUST00000177698 Slc25a13 protein_coding Interval_45400 chr13 54887171 54887718 + 0 NA promoter-TSS (ENSMUSG00000100728.1) lincRNA-promoter-TSS (ENSMUSG00000100728.1) -26 ENSMUSG00000100728.1 ENSMUSG00000100728 ENSMUST00000189848 Gm29431 lincRNA Interval_37020 chr12 56484648 56485157 + 0 NA Intergenic Intergenic 15926 ENSMUSG00000112468.1 ENSMUSG00000112468 ENSMUST00000219957 Gm47720 TEC Interval_83630 chr19 3322386 3325718 + 0 NA intron (ENSMUSG00000024900.5, intron 1 of 1) protein_coding-intron (ENSMUSG00000024900.5, intron 1 of 18) -6471 ENSMUSG00000118213.1 ENSMUSG00000118213 ENSMUST00000237542 Gm50307 processed_pseudogene Interval_56897 chr14 122946192 122946903 + 0 NA intron (ENSMUSG00000041594.18, intron 2 of 4) protein_coding-intron (ENSMUSG00000041594.18, intron 6 of 17) -5572 ENSMUSG00000085423.1 ENSMUSG00000085423 ENSMUST00000136187 4930594M22Rik antisense Interval_62555 chr15 94600847 94601603 + 0 NA Intergenic Intergenic -15750 ENSMUSG00000022451.12 ENSMUSG00000022451 ENSMUST00000152590 Twf1 protein_coding Interval_97217 chr2 132292002 132292291 + 0 NA intron (ENSMUSG00000058793.14, intron 1 of 12) protein_coding-intron (ENSMUSG00000058793.14, intron 1 of 12) 28905 ENSMUSG00000058793.14 ENSMUSG00000058793 ENSMUST00000138194 Cds2 protein_coding Interval_55825 chr14 100801765 100802290 + 0 NA Intergenic Intergenic -10160 ENSMUSG00000115721.1 ENSMUSG00000115721 ENSMUST00000226241 Gm49239 processed_pseudogene Interval_73023 chr17 34186854 34188203 + 0 NA promoter-TSS (ENSMUSG00000037321.17) protein_coding-promoter-TSS (ENSMUSG00000037321.17) -163 ENSMUSG00000096727.3 ENSMUSG00000096727 ENSMUST00000173831 Psmb9 protein_coding Interval_112621 chr4 43653335 43653621 + 0 NA promoter-TSS (ENSMUSG00000066196.11) protein_coding-promoter-TSS (ENSMUSG00000066196.11) -1319 ENSMUSG00000066196.11 ENSMUSG00000066196 ENSMUST00000107870 Spag8 protein_coding Interval_163250 chr9 19672765 19673051 + 0 NA Intergenic Intergenic -14261 ENSMUSG00000110521.1 ENSMUSG00000110521 ENSMUST00000212177 Olfr856-ps1 unprocessed_pseudogene Interval_67645 chr16 55322181 55322576 + 0 NA Intergenic Intergenic -24392 ENSMUSG00000064310.10 ENSMUSG00000064310 ENSMUST00000143914 Zpld1 protein_coding Interval_15123 chr10 42688223 42689855 + 0 NA intron (ENSMUSG00000038280.12, intron 2 of 3) protein_coding-intron (ENSMUSG00000038280.12, intron 2 of 5) 9479 ENSMUSG00000086434.1 ENSMUSG00000086434 ENSMUST00000149950 Gm15200 antisense Interval_29608 chr11 85346110 85346369 + 0 NA exon (ENSMUSG00000020525.17, exon 6 of 6) protein_coding-exon (ENSMUSG00000020525.17, exon 6 of 6) 34075 ENSMUSG00000020525.17 ENSMUSG00000020525 ENSMUST00000127717 Ppm1d protein_coding Interval_52361 chr14 45399439 45400638 + 0 NA intron (ENSMUSG00000037722.8, intron 1 of 4) protein_coding-intron (ENSMUSG00000037722.8, intron 1 of 3) 4922 ENSMUSG00000096383.1 ENSMUSG00000096383 ENSMUST00000179366 Gm25353 miRNA Interval_81788 chr18 64682119 64683439 + 0 NA Intergenic Intergenic 2331 ENSMUSG00000118224.1 ENSMUSG00000118224 ENSMUST00000237925 Gm50352 processed_pseudogene Interval_99224 chr2 158207719 158208616 + 0 NA intron (ENSMUSG00000037813.13, intron 8 of 14) protein_coding-intron (ENSMUSG00000037813.13, intron 8 of 13) 16159 ENSMUSG00000078957.3 ENSMUSG00000078957 ENSMUST00000109506 1700060C20Rik antisense Interval_47039 chr13 74600551 74602941 + 0 NA intron (ENSMUSG00000113204.1, intron 5 of 10) lincRNA-intron (ENSMUSG00000113204.1, intron 5 of 10) 8288 ENSMUSG00000113204.1 ENSMUSG00000113204 ENSMUST00000222064 Gm46430 lincRNA Interval_13465 chr10 18448520 18449174 + 0 NA intron (ENSMUSG00000039835.16, intron 1 of 3) protein_coding-intron (ENSMUSG00000039835.16, intron 1 of 6) 97217 ENSMUSG00000019853.6 ENSMUSG00000019853 ENSMUST00000214548 Hebp2 protein_coding Interval_13740 chr10 21690394 21690869 + 0 NA promoter-TSS (ENSMUSG00000056716.10) lincRNA-promoter-TSS (ENSMUSG00000056716.10) 4220 ENSMUSG00000056716.10 ENSMUSG00000056716 ENSMUST00000071008 Gm5420 lincRNA Interval_123949 chr5 36814464 36814822 + 0 NA intron (ENSMUSG00000029119.9, intron 3 of 8) protein_coding-intron (ENSMUSG00000029119.9, intron 11 of 18) -1680 ENSMUSG00000029119.9 ENSMUSG00000029119 ENSMUST00000124711 Man2b2 protein_coding Interval_20298 chr10 116727622 116729458 + 0 NA promoter-TSS (ENSMUSG00000112924.1) lincRNA-promoter-TSS (ENSMUSG00000112924.1) 637 ENSMUSG00000100198.1 ENSMUSG00000100198 ENSMUST00000185546 1700030O20Rik lincRNA Interval_3786 chr1 63090254 63090464 + 0 NA intron (ENSMUSG00000040865.15, intron 4 of 11) protein_coding-intron (ENSMUSG00000040865.15, intron 3 of 10) 16585 ENSMUSG00000081429.1 ENSMUSG00000081429 ENSMUST00000118179 Rps27-ps1 processed_pseudogene Interval_38532 chr12 79919165 79919414 + 0 NA intron (ENSMUSG00000112765.1, intron 2 of 3) lincRNA-intron (ENSMUSG00000112765.1, intron 2 of 2) 6205 ENSMUSG00000112765.1 ENSMUSG00000112765 ENSMUST00000219857 9430078K24Rik lincRNA Interval_171441 chr9 118379183 118379404 + 0 NA Intergenic Intergenic 24009 ENSMUSG00000103968.1 ENSMUSG00000103968 ENSMUST00000193035 2610509F24Rik TEC Interval_58255 chr15 31417191 31419484 + 0 NA Intergenic Intergenic 28480 ENSMUSG00000068964.5 ENSMUSG00000068964 ENSMUST00000091031 Gm6361 processed_pseudogene Interval_109894 chr3 149850987 149851172 + 0 NA Intergenic Intergenic -190683 ENSMUSG00000104785.1 ENSMUSG00000104785 ENSMUST00000197948 Gm31121 lincRNA Interval_12210 chr1 190852691 190852970 + 0 NA intron (ENSMUSG00000089872.10, intron 3 of 8) protein_coding-intron (ENSMUSG00000089872.10, intron 6 of 14) 46887 ENSMUSG00000089872.10 ENSMUSG00000089872 ENSMUST00000159066 Rps6kc1 protein_coding Interval_165216 chr9 45408034 45408736 + 0 NA TTS (ENSMUSG00000059412.7) protein_coding-TTS (ENSMUSG00000059412.7) 1213 ENSMUSG00000059412.7 ENSMUSG00000059412 ENSMUST00000217549 Fxyd2 protein_coding Interval_113899 chr4 59718740 59720223 + 0 NA intron (ENSMUSG00000045071.14, intron 2 of 3) protein_coding-intron (ENSMUSG00000045071.14, intron 2 of 2) -13777 ENSMUSG00000045071.14 ENSMUSG00000045071 ENSMUST00000221633 E130308A19Rik protein_coding Interval_63685 chr15 102785143 102785681 + 0 NA Intergenic Intergenic 9959 ENSMUSG00000116263.1 ENSMUSG00000116263 ENSMUST00000229081 Gm49473 processed_pseudogene Interval_54530 chr14 70489683 70490551 + 0 NA exon (ENSMUSG00000022098.10, exon 15 of 20) protein_coding-exon (ENSMUSG00000022098.10, exon 15 of 20) -3478 ENSMUSG00000022098.10 ENSMUSG00000022098 ENSMUST00000226539 Bmp1 protein_coding Interval_159431 chr8 94590775 94591792 + 0 NA TTS (ENSMUSG00000031774.8) protein_coding-TTS (ENSMUSG00000031774.8) 10407 ENSMUSG00000031774.8 ENSMUSG00000031774 ENSMUST00000212429 Fam192a protein_coding Interval_87962 chr19 57403024 57404766 + 0 NA Intergenic Intergenic 19599 ENSMUSG00000117927.1 ENSMUSG00000117927 ENSMUST00000237878 Gm50271 lincRNA Interval_66591 chr16 35466051 35466526 + 0 NA intron (ENSMUSG00000022844.8, intron 5 of 8) protein_coding-intron (ENSMUSG00000022844.8, intron 2 of 16) -25925 ENSMUSG00000095160.1 ENSMUSG00000095160 ENSMUST00000178681 Gm25548 miRNA Interval_145361 chr7 34229483 34230469 + 0 NA promoter-TSS (ENSMUSG00000036427.5) protein_coding-promoter-TSS (ENSMUSG00000036427.5) 287 ENSMUSG00000036427.5 ENSMUSG00000036427 ENSMUST00000138773 Gpi1 protein_coding Interval_153266 chr7 143052340 143055068 + 0 NA promoter-TSS (ENSMUSG00000059277.12) processed_transcript-promoter-TSS (ENSMUSG00000059277.12) -18 ENSMUSG00000059277.12 ENSMUSG00000059277 ENSMUST00000131129 R74862 processed_transcript Interval_68599 chr16 80502801 80504025 + 0 NA Intergenic Intergenic -181812 ENSMUSG00000089138.1 ENSMUSG00000089138 ENSMUST00000158513 Gm24773 snRNA Interval_66919 chr16 38531438 38531628 + 0 NA intron (ENSMUSG00000034064.14, intron 8 of 10) protein_coding-intron (ENSMUSG00000034064.14, intron 8 of 10) -8892 ENSMUSG00000002846.9 ENSMUSG00000002846 ENSMUST00000147543 Timmdc1 protein_coding Interval_30031 chr11 88803009 88804028 + 0 NA Intergenic Intergenic 38022 ENSMUSG00000018428.15 ENSMUSG00000018428 ENSMUST00000153787 Akap1 protein_coding Interval_17368 chr10 76103983 76104215 + 0 NA intron (ENSMUSG00000020226.9, intron 4 of 14) protein_coding-intron (ENSMUSG00000020226.9, intron 4 of 14) 6862 ENSMUSG00000020226.9 ENSMUSG00000020226 ENSMUST00000120757 Slc5a4b protein_coding Interval_29061 chr11 80109610 80110530 + 0 NA exon (ENSMUSG00000017550.14, exon 10 of 23) protein_coding-exon (ENSMUSG00000017550.14, exon 10 of 23) 7067 ENSMUSG00000017550.14 ENSMUSG00000017550 ENSMUST00000154168 Atad5 protein_coding Interval_31792 chr11 102900651 102901341 + 0 NA promoter-TSS (ENSMUSG00000020932.14) protein_coding-promoter-TSS (ENSMUSG00000020932.14) -84 ENSMUSG00000020932.14 ENSMUSG00000020932 ENSMUST00000127909 Gfap protein_coding Interval_172623 chrX 38491988 38492460 + 0 NA Intergenic Intergenic 15763 ENSMUSG00000087390.1 ENSMUSG00000087390 ENSMUST00000130251 Gm7598 lincRNA Interval_45028 chr13 51607460 51608257 + 0 NA Intergenic Intergenic -37374 ENSMUSG00000062248.5 ENSMUSG00000062248 ENSMUST00000075853 Cks2 protein_coding Interval_99612 chr2 163590251 163590831 + 0 NA Intergenic Intergenic -11773 ENSMUSG00000017679.16 ENSMUSG00000017679 ENSMUST00000132904 Ttpal protein_coding Interval_36380 chr12 42896385 42896745 + 0 NA Intergenic Intergenic 118894 ENSMUSG00000112407.1 ENSMUSG00000112407 ENSMUST00000219475 Gm33340 lincRNA Interval_157719 chr8 72511288 72511598 + 0 NA intron (ENSMUSG00000045248.6, intron 1 of 2) protein_coding-intron (ENSMUSG00000045248.6, intron 1 of 2) -3915 ENSMUSG00000110446.1 ENSMUSG00000110446 ENSMUST00000212240 Gm18646 processed_pseudogene Interval_16018 chr10 60151152 60151544 + 0 NA Intergenic Intergenic 24572 ENSMUSG00000105468.1 ENSMUSG00000105468 ENSMUST00000198998 Mir6906 miRNA Interval_125982 chr5 76536499 76536937 + 0 NA exon (ENSMUSG00000036435.13, exon 3 of 3) protein_coding-exon (ENSMUSG00000036435.13, exon 3 of 3) -15928 ENSMUSG00000036435.13 ENSMUSG00000036435 ENSMUST00000143736 Exoc1 protein_coding Interval_73043 chr17 34340531 34341209 + 0 NA exon (ENSMUSG00000067341.6, exon 5 of 5) protein_coding-exon (ENSMUSG00000067341.6, exon 5 of 5) 3775 ENSMUSG00000036322.11 ENSMUSG00000036322 ENSMUST00000134042 H2-Ea polymorphic_pseudogene Interval_8525 chr1 140590797 140591011 + 0 NA intron (ENSMUSG00000052726.16, intron 26 of 27) protein_coding-intron (ENSMUSG00000052726.16, intron 25 of 26) 65500 ENSMUSG00000102368.1 ENSMUSG00000102368 ENSMUST00000193820 4930590L20Rik antisense Interval_2000 chr1 35822200 35823121 + 0 NA Intergenic Intergenic 15686 ENSMUSG00000101714.1 ENSMUSG00000101714 ENSMUST00000187528 Gm28415 lincRNA Interval_147018 chr7 58421429 58422381 + 0 NA Intergenic Intergenic -96257 ENSMUSG00000109348.1 ENSMUSG00000109348 ENSMUST00000207950 Gm44852 processed_pseudogene Interval_92433 chr2 59692614 59692982 + 0 NA intron (ENSMUSG00000035168.16, intron 1 of 25) protein_coding-intron (ENSMUSG00000035168.16, intron 2 of 26) -113270 ENSMUSG00000035168.16 ENSMUSG00000035168 ENSMUST00000147650 Tanc1 protein_coding Interval_161445 chr8 120498048 120499220 + 0 NA intron (ENSMUSG00000031822.20, intron 1 of 15) protein_coding-intron (ENSMUSG00000031822.20, intron 1 of 15) -21981 ENSMUSG00000097983.1 ENSMUSG00000097983 ENSMUST00000182423 Gm26971 sense_intronic Interval_26657 chr11 59511284 59512710 + 0 NA TTS (ENSMUSG00000072893.12) processed_transcript-TTS (ENSMUSG00000072893.12) 6312 ENSMUSG00000072893.12 ENSMUSG00000072893 ENSMUST00000130570 4933439C10Rik processed_transcript Interval_34921 chr12 13502130 13503058 + 0 NA intron (ENSMUSG00000020576.10, intron 1 of 6) protein_coding-intron (ENSMUSG00000020576.10, intron 44 of 51) -2284 ENSMUSG00000020576.10 ENSMUSG00000020576 ENSMUST00000223424 Nbas protein_coding Interval_88056 chr19 58523519 58524727 + 0 NA intron (ENSMUSG00000025090.9, intron 3 of 6) protein_coding-intron (ENSMUSG00000025090.9, intron 3 of 8) 12130 ENSMUSG00000025090.9 ENSMUSG00000025090 ENSMUST00000069419 Ccdc172 protein_coding Interval_172103 chrX 7591731 7591982 + 0 NA intron (ENSMUSG00000039521.13, intron 10 of 11) protein_coding-intron (ENSMUSG00000039521.13, intron 8 of 10) 5423 ENSMUSG00000031143.4 ENSMUSG00000031143 ENSMUST00000144674 Ccdc22 protein_coding Interval_70608 chr17 12293175 12295189 + 0 NA intron (ENSMUSG00000014426.9, intron 1 of 25) protein_coding-intron (ENSMUSG00000014426.9, intron 1 of 26) -6854 ENSMUSG00000077476.1 ENSMUSG00000077476 ENSMUST00000104288 Gm24794 snoRNA Interval_17320 chr10 75850832 75852233 + 0 NA Intergenic Intergenic 8660 ENSMUSG00000033307.7 ENSMUSG00000033307 ENSMUST00000218267 Mif protein_coding Interval_111770 chr4 28300054 28301231 + 0 NA Intergenic Intergenic -53141 ENSMUSG00000082703.1 ENSMUSG00000082703 ENSMUST00000118918 Gm11907 processed_pseudogene Interval_17920 chr10 80834925 80836005 + 0 NA TTS (ENSMUSG00000051067.8) protein_coding-TTS (ENSMUSG00000051067.8) 6668 ENSMUSG00000087993.1 ENSMUSG00000087993 ENSMUST00000157368 Mir1982 miRNA Interval_92757 chr2 65161217 65161662 + 0 NA intron (ENSMUSG00000034903.18, intron 2 of 7) protein_coding-intron (ENSMUSG00000034903.18, intron 1 of 12) -77317 ENSMUSG00000086881.1 ENSMUSG00000086881 ENSMUST00000137582 Gm13594 antisense Interval_86738 chr19 43504505 43506242 + 0 NA promoter-TSS (ENSMUSG00000025190.13) protein_coding-promoter-TSS (ENSMUSG00000025190.13) 10492 ENSMUSG00000025190.13 ENSMUSG00000025190 ENSMUST00000124954 Got1 protein_coding Interval_174097 chrX 134686202 134687116 + 0 NA promoter-TSS (ENSMUSG00000087024.1) processed_transcript-promoter-TSS (ENSMUSG00000087024.1) 140 ENSMUSG00000049804.9 ENSMUSG00000049804 ENSMUST00000124226 Armcx4 protein_coding Interval_115616 chr4 101406134 101406670 + 0 NA intron (ENSMUSG00000084758.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000084758.1, intron 1 of 2) 3321 ENSMUSG00000084758.1 ENSMUSG00000084758 ENSMUST00000124786 Gm12798 lincRNA Interval_73703 chr17 42883116 42885527 + 0 NA Intergenic Intergenic -53291 ENSMUSG00000061665.7 ENSMUSG00000061665 ENSMUST00000233626 Cd2ap protein_coding Interval_95655 chr2 113639546 113640171 + 0 NA intron (ENSMUSG00000044042.19, intron 14 of 17) protein_coding-intron (ENSMUSG00000044042.19, intron 13 of 16) 68692 ENSMUSG00000084798.1 ENSMUSG00000084798 ENSMUST00000123377 4930533B01Rik antisense Interval_87442 chr19 50983019 50983246 + 0 NA Intergenic Intergenic -161617 ENSMUSG00000118338.1 ENSMUSG00000118338 ENSMUST00000235635 Gm50317 TEC Interval_155404 chr8 33336649 33336948 + 0 NA intron (ENSMUSG00000031583.13, intron 5 of 8) protein_coding-intron (ENSMUSG00000031583.13, intron 5 of 33) -6248 ENSMUSG00000031583.13 ENSMUSG00000031583 ENSMUST00000209293 Wrn protein_coding Interval_101317 chr2 180399877 180400088 + 0 NA Intergenic Intergenic 1603 ENSMUSG00000065460.1 ENSMUSG00000065460 ENSMUST00000083526 Mir133a-2 miRNA Interval_159742 chr8 100104582 100105286 + 0 NA Intergenic Intergenic 44818 ENSMUSG00000081383.1 ENSMUSG00000081383 ENSMUST00000120764 Gm5742 processed_pseudogene Interval_100747 chr2 172304112 172304465 + 0 NA Intergenic Intergenic 16155 ENSMUSG00000085949.1 ENSMUSG00000085949 ENSMUST00000152112 Gm14275 lincRNA Interval_151648 chr7 125686318 125686763 + 0 NA intron (ENSMUSG00000032777.9, intron 5 of 19) protein_coding-intron (ENSMUSG00000032777.9, intron 6 of 36) -17548 ENSMUSG00000032777.9 ENSMUSG00000032777 ENSMUST00000206127 Gtf3c1 protein_coding Interval_49255 chr13 109838965 109840734 + 0 NA intron (ENSMUSG00000021699.17, intron 6 of 15) protein_coding-intron (ENSMUSG00000021699.17, intron 5 of 14) -63960 ENSMUSG00000084651.1 ENSMUSG00000084651 ENSMUST00000122702 Mir1904 miRNA Interval_4077 chr1 67477722 67478175 + 0 NA Intergenic Intergenic -107105 ENSMUSG00000082473.1 ENSMUSG00000082473 ENSMUST00000119302 Kif22-ps processed_pseudogene Interval_77257 chr17 87622148 87623034 + 0 NA Intergenic Intergenic -13388 ENSMUSG00000045394.9 ENSMUSG00000045394 ENSMUST00000234623 Epcam protein_coding Interval_110277 chr3 155537642 155538185 + 0 NA Intergenic Intergenic 23472 ENSMUSG00000103295.1 ENSMUSG00000103295 ENSMUST00000193152 Scp2-ps1 unprocessed_pseudogene Interval_15500 chr10 49782448 49783675 + 0 NA intron (ENSMUSG00000056073.16, intron 2 of 7) protein_coding-intron (ENSMUSG00000056073.16, intron 1 of 15) -5766 ENSMUSG00000111934.1 ENSMUSG00000111934 ENSMUST00000218448 Gm48123 TEC Interval_22078 chr11 6199276 6201030 + 0 NA exon (ENSMUSG00000053838.14, exon 1 of 6) protein_coding-exon (ENSMUSG00000053838.14, exon 1 of 6) 124 ENSMUSG00000096923.1 ENSMUSG00000096923 ENSMUST00000181545 A730071L15Rik protein_coding Interval_103972 chr3 55758380 55758583 + 0 NA intron (ENSMUSG00000027799.12, intron 2 of 18) protein_coding-intron (ENSMUSG00000027799.12, intron 41 of 57) -24029 ENSMUSG00000056947.5 ENSMUSG00000056947 ENSMUST00000075422 Mab21l1 protein_coding Interval_47100 chr13 75724241 75724637 + 0 NA intron (ENSMUSG00000001542.7, intron 1 of 3) protein_coding-intron (ENSMUSG00000001542.7, intron 1 of 11) -2840 ENSMUSG00000113041.1 ENSMUSG00000113041 ENSMUST00000222965 Gm48302 sense_intronic Interval_14124 chr10 27805030 27805295 + 0 NA intron (ENSMUSG00000112206.1, intron 2 of 2) lincRNA-intron (ENSMUSG00000112206.1, intron 2 of 2) 4462 ENSMUSG00000112206.1 ENSMUSG00000112206 ENSMUST00000218501 Gm30228 lincRNA Interval_99604 chr2 163492380 163493430 + 0 NA TTS (ENSMUSG00000046840.16) antisense-TTS (ENSMUSG00000046840.16) 587 ENSMUSG00000078949.2 ENSMUSG00000078949 ENSMUST00000109416 R3hdml protein_coding Interval_49202 chr13 109409584 109410412 + 0 NA intron (ENSMUSG00000021699.17, intron 2 of 5) protein_coding-intron (ENSMUSG00000021699.17, intron 1 of 14) 85254 ENSMUSG00000076946.2 ENSMUSG00000076946 ENSMUST00000103758 Mir582 miRNA Interval_93679 chr2 75782900 75783997 + 0 NA Intergenic Intergenic 6260 ENSMUSG00000086813.1 ENSMUSG00000086813 ENSMUST00000135682 Gm13657 processed_transcript Interval_53692 chr14 60917464 60917749 + 0 NA Intergenic Intergenic 120285 ENSMUSG00000060548.13 ENSMUSG00000060548 ENSMUST00000225730 Tnfrsf19 protein_coding Interval_28871 chr11 78896358 78897514 + 0 NA Intergenic Intergenic -28240 ENSMUSG00000020826.9 ENSMUSG00000020826 ENSMUST00000214397 Nos2 protein_coding Interval_20706 chr10 120397015 120397627 + 0 NA intron (ENSMUSG00000056758.14, intron 3 of 5) protein_coding-intron (ENSMUSG00000056758.14, intron 3 of 4) 7798 ENSMUSG00000090191.1 ENSMUSG00000090191 ENSMUST00000161291 9230105E05Rik antisense Interval_19661 chr10 107458988 107459571 + 0 NA Intergenic Intergenic -21127 ENSMUSG00000104558.1 ENSMUSG00000104558 ENSMUST00000198554 Gm44403 miRNA Interval_135417 chr6 39249316 39249879 + 0 NA Intergenic Intergenic 9483 ENSMUSG00000107365.1 ENSMUSG00000107365 ENSMUST00000200801 Gm43479 lincRNA Interval_38713 chr12 81459029 81460214 + 0 NA intron (ENSMUSG00000091803.7, intron 3 of 4) protein_coding-intron (ENSMUSG00000091803.7, intron 3 of 3) 25208 ENSMUSG00000091803.7 ENSMUSG00000091803 ENSMUST00000169912 Cox16 protein_coding Interval_130666 chr5 129601908 129602507 + 0 NA exon (ENSMUSG00000029436.9, exon 8 of 10) protein_coding-exon (ENSMUSG00000029436.9, exon 8 of 10) 5581 ENSMUSG00000029436.9 ENSMUSG00000029436 ENSMUST00000177802 Mmp17 protein_coding Interval_25282 chr11 46095480 46096604 + 0 NA intron (ENSMUSG00000011256.16, intron 4 of 22) protein_coding-intron (ENSMUSG00000011256.16, intron 4 of 22) -6228 ENSMUSG00000098942.1 ENSMUSG00000098942 ENSMUST00000184230 Mir8100 miRNA Interval_71185 chr17 20989309 20989529 + 0 NA TTS (ENSMUSG00000045575.2) protein_coding-TTS (ENSMUSG00000045575.2) 7045 ENSMUSG00000045575.2 ENSMUSG00000045575 ENSMUST00000056339 Vmn1r233 protein_coding Interval_111839 chr4 31797215 31797488 + 0 NA Intergenic Intergenic -188316 ENSMUSG00000028284.13 ENSMUSG00000028284 ENSMUST00000131310 Map3k7 protein_coding Interval_39067 chr12 84807387 84807844 + 0 NA TTS (ENSMUSG00000002020.15) protein_coding-TTS (ENSMUSG00000002020.15) 34324 ENSMUSG00000021241.7 ENSMUSG00000021241 ENSMUST00000220726 Isca2 protein_coding Interval_124447 chr5 47831227 47831677 + 0 NA Intergenic Intergenic 131607 ENSMUSG00000105616.1 ENSMUSG00000105616 ENSMUST00000198805 Gm3010 processed_pseudogene Interval_2971 chr1 51733807 51734117 + 0 NA intron (ENSMUSG00000101741.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000101741.1, intron 1 of 1) -36062 ENSMUSG00000101741.1 ENSMUSG00000101741 ENSMUST00000186769 Gm28055 lincRNA Interval_2038 chr1 36049613 36049824 + 0 NA Intergenic Intergenic -18700 ENSMUSG00000102434.1 ENSMUSG00000102434 ENSMUST00000195698 Gm38049 TEC Interval_34525 chr12 4896671 4898853 + 0 NA intron (ENSMUSG00000020634.12, intron 2 of 6) protein_coding-intron (ENSMUSG00000020634.12, intron 2 of 6) 9502 ENSMUSG00000020634.12 ENSMUSG00000020634 ENSMUST00000141360 Ubxn2a protein_coding Interval_174722 chrX 164065157 164066629 + 0 NA Intergenic Intergenic 10600 ENSMUSG00000040749.11 ENSMUSG00000040749 ENSMUST00000134272 Siah1b protein_coding Interval_165562 chr9 49506701 49507136 + 0 NA exon (ENSMUSG00000039542.16, exon 19 of 20) protein_coding-exon (ENSMUSG00000039542.16, exon 19 of 20) -11370 ENSMUSG00000079564.3 ENSMUSG00000079564 ENSMUST00000215070 Gm11149 antisense Interval_36758 chr12 53145172 53145595 + 0 NA intron (ENSMUSG00000061603.8, intron 13 of 13) protein_coding-intron (ENSMUSG00000061603.8, intron 13 of 13) -98557 ENSMUSG00000070192.1 ENSMUSG00000070192 ENSMUST00000093682 n-R5s58 rRNA Interval_62353 chr15 90940679 90941360 + 0 NA intron (ENSMUSG00000022629.17, intron 3 of 4) protein_coding-intron (ENSMUSG00000022629.17, intron 31 of 35) 10287 ENSMUSG00000022629.17 ENSMUSG00000022629 ENSMUST00000229801 Kif21a protein_coding Interval_20084 chr10 113735888 113736616 + 0 NA Intergenic Intergenic 4503 ENSMUSG00000112181.1 ENSMUSG00000112181 ENSMUST00000220147 Gm47538 processed_pseudogene Interval_174116 chrX 135601522 135602207 + 0 NA Intergenic Intergenic -3106 ENSMUSG00000031410.14 ENSMUSG00000031410 ENSMUST00000141310 Nxf7 protein_coding Interval_15481 chr10 48520584 48521180 + 0 NA Intergenic Intergenic 15474 ENSMUSG00000111262.1 ENSMUSG00000111262 ENSMUST00000217071 Gm47354 lincRNA Interval_109557 chr3 144437772 144438965 + 0 NA intron (ENSMUSG00000040151.9, intron 4 of 6) protein_coding-intron (ENSMUSG00000040151.9, intron 4 of 6) -10696 ENSMUSG00000106416.1 ENSMUSG00000106416 ENSMUST00000198953 Gm5857 processed_pseudogene Interval_115105 chr4 89877057 89877289 + 0 NA Intergenic Intergenic 197737 ENSMUSG00000043753.2 ENSMUSG00000043753 ENSMUST00000052478 Dmrta1 protein_coding Interval_104333 chr3 63570180 63571207 + 0 NA Intergenic Intergenic 81700 ENSMUSG00000088957.1 ENSMUSG00000088957 ENSMUST00000158332 Gm24946 snRNA Interval_123878 chr5 36226700 36227113 + 0 NA intron (ENSMUSG00000029093.14, intron 3 of 4) protein_coding-intron (ENSMUSG00000029093.14, intron 2 of 26) 22885 ENSMUSG00000043430.5 ENSMUSG00000043430 ENSMUST00000052224 Psapl1 protein_coding Interval_112123 chr4 34842954 34844117 + 0 NA exon (ENSMUSG00000082367.1, exon 1 of 1) processed_pseudogene-exon (ENSMUSG00000082367.1, exon 1 of 1) 550 ENSMUSG00000082367.1 ENSMUSG00000082367 ENSMUST00000122250 Gm12363 processed_pseudogene Interval_87098 chr19 46092665 46093094 + 0 NA Intergenic Intergenic 16890 ENSMUSG00000015176.11 ENSMUSG00000015176 ENSMUST00000224490 Nolc1 protein_coding Interval_101549 chr3 5217998 5220012 + 0 NA intron (ENSMUSG00000025255.18, intron 1 of 1) protein_coding-intron (ENSMUSG00000025255.18, intron 1 of 10) 1836 ENSMUSG00000086224.8 ENSMUSG00000086224 ENSMUST00000177440 2700069I18Rik antisense Interval_152213 chr7 130683607 130684180 + 0 NA intron (ENSMUSG00000030852.18, intron 2 of 15) protein_coding-intron (ENSMUSG00000030852.18, intron 4 of 20) -29501 ENSMUSG00000109225.1 ENSMUSG00000109225 ENSMUST00000207466 4930513N20Rik TEC Interval_21034 chr10 124320095 124320873 + 0 NA Intergenic Intergenic 101622 ENSMUSG00000112250.1 ENSMUSG00000112250 ENSMUST00000220441 Gm47837 processed_pseudogene Interval_113298 chr4 53235437 53236188 + 0 NA Intergenic Intergenic -10384 ENSMUSG00000086947.1 ENSMUSG00000086947 ENSMUST00000155178 4930522O17Rik antisense Interval_108282 chr3 123289032 123289883 + 0 NA promoter-TSS (ENSMUSG00000039234.11) protein_coding-promoter-TSS (ENSMUSG00000039234.11) 21967 ENSMUSG00000039234.11 ENSMUSG00000039234 ENSMUST00000196482 Sec24d protein_coding Interval_59822 chr15 59560796 59561013 + 0 NA intron (ENSMUSG00000059586.10, intron 5 of 7) protein_coding-intron (ENSMUSG00000059586.10, intron 4 of 6) -57686 ENSMUSG00000115896.1 ENSMUSG00000115896 ENSMUST00000229684 Gm36677 lincRNA Interval_14048 chr10 26062846 26063044 + 0 NA intron (ENSMUSG00000049420.9, intron 1 of 2) protein_coding-intron (ENSMUSG00000049420.9, intron 1 of 1) 15262 ENSMUSG00000049420.9 ENSMUSG00000049420 ENSMUST00000219872 Tmem200a protein_coding Interval_139650 chr6 105426975 105427507 + 0 NA Intergenic Intergenic 27522 ENSMUSG00000094357.1 ENSMUSG00000094357 ENSMUST00000179099 Gm25570 miRNA Interval_36848 chr12 54656004 54657131 + 0 NA promoter-TSS (ENSMUSG00000044408.7) protein_coding-promoter-TSS (ENSMUSG00000044408.7) -369 ENSMUSG00000044408.7 ENSMUSG00000044408 ENSMUST00000220090 Sptssa protein_coding Interval_84656 chr19 14725950 14726214 + 0 NA Intergenic Intergenic -7602 ENSMUSG00000084675.1 ENSMUSG00000084675 ENSMUST00000122726 Gm26026 snRNA Interval_26730 chr11 60059285 60060607 + 0 NA Intergenic Intergenic -39601 ENSMUSG00000098502.1 ENSMUSG00000098502 ENSMUST00000183502 Gm27511 misc_RNA Interval_60146 chr15 66418085 66418741 + 0 NA intron (ENSMUSG00000022375.6, intron 10 of 11) protein_coding-intron (ENSMUSG00000022375.6, intron 10 of 11) -59929 ENSMUSG00000115351.1 ENSMUSG00000115351 ENSMUST00000227329 Gm19077 processed_pseudogene Interval_81012 chr18 52874795 52876229 + 0 NA intron (ENSMUSG00000024534.15, intron 5 of 11) protein_coding-intron (ENSMUSG00000024534.15, intron 5 of 11) 37548 ENSMUSG00000024534.15 ENSMUSG00000024534 ENSMUST00000179689 Sncaip protein_coding Interval_38360 chr12 77786911 77787175 + 0 NA Intergenic Intergenic 27766 ENSMUSG00000077707.1 ENSMUSG00000077707 ENSMUST00000104519 Gm24070 snoRNA Interval_71100 chr17 17980772 17981711 + 0 NA Intergenic Intergenic -9257 ENSMUSG00000116932.1 ENSMUSG00000116932 ENSMUST00000231588 Fpr-rs5 unprocessed_pseudogene Interval_68636 chr16 82507382 82508212 + 0 NA Intergenic Intergenic -35432 ENSMUSG00000094726.1 ENSMUSG00000094726 ENSMUST00000177614 Gm23355 snRNA Interval_57080 chr15 5869573 5870365 + 0 NA Intergenic Intergenic 3734 ENSMUSG00000115106.1 ENSMUSG00000115106 ENSMUST00000228443 Gm8043 processed_pseudogene Interval_125500 chr5 67696966 67697707 + 0 NA intron (ENSMUSG00000037685.15, intron 21 of 33) protein_coding-intron (ENSMUSG00000037685.15, intron 24 of 36) 54935 ENSMUSG00000085363.1 ENSMUSG00000085363 ENSMUST00000145914 Gm15478 antisense Interval_65113 chr16 19766205 19767094 + 0 NA intron (ENSMUSG00000022686.14, intron 5 of 5) protein_coding-intron (ENSMUSG00000022686.14, intron 3 of 3) 6415 ENSMUSG00000022686.14 ENSMUSG00000022686 ENSMUST00000119468 B3gnt5 protein_coding Interval_166892 chr9 63734937 63736185 + 0 NA intron (ENSMUSG00000032402.12, intron 1 of 8) protein_coding-intron (ENSMUSG00000032402.12, intron 1 of 8) -23592 ENSMUSG00000032402.12 ENSMUSG00000032402 ENSMUST00000137065 Smad3 protein_coding Interval_99605 chr2 163499766 163500072 + 0 NA exon (ENSMUSG00000078949.2, exon 4 of 5) protein_coding-exon (ENSMUSG00000078949.2, exon 4 of 5) -6889 ENSMUSG00000017950.16 ENSMUSG00000017950 ENSMUST00000137449 Hnf4a protein_coding Interval_39363 chr12 86914552 86914865 + 0 NA Intergenic Intergenic -29910 ENSMUSG00000034168.7 ENSMUSG00000034168 ENSMUST00000038422 Irf2bpl protein_coding Interval_69029 chr16 90208208 90208676 + 0 NA Intergenic Intergenic 10294 ENSMUSG00000116829.1 ENSMUSG00000116829 ENSMUST00000231225 Gm49704 processed_pseudogene Interval_97013 chr2 130504378 130505442 + 0 NA intron (ENSMUSG00000027303.18, intron 3 of 21) protein_coding-intron (ENSMUSG00000027303.18, intron 3 of 20) -19085 ENSMUSG00000115955.1 ENSMUSG00000115955 ENSMUST00000229108 9530056E24Rik TEC Interval_163724 chr9 24911474 24911917 + 0 NA Intergenic Intergenic -41278 ENSMUSG00000110872.1 ENSMUSG00000110872 ENSMUST00000217324 Gm48255 processed_pseudogene Interval_146808 chr7 51988951 51989167 + 0 NA intron (ENSMUSG00000030498.15, intron 6 of 6) protein_coding-intron (ENSMUSG00000030498.15, intron 7 of 7) 16639 ENSMUSG00000074093.4 ENSMUSG00000074093 ENSMUST00000207457 Svip protein_coding Interval_40136 chr12 101892432 101893778 + 0 NA intron (ENSMUSG00000021188.14, intron 7 of 8) protein_coding-intron (ENSMUSG00000021188.14, intron 7 of 20) -12975 ENSMUSG00000093437.1 ENSMUSG00000093437 ENSMUST00000176181 Gm20702 processed_pseudogene Interval_920 chr1 13166713 13166954 + 0 NA exon (ENSMUSG00000005886.14, exon 13 of 13) protein_coding-exon (ENSMUSG00000005886.14, exon 13 of 13) 12881 ENSMUSG00000103506.1 ENSMUSG00000103506 ENSMUST00000195493 Gm38376 TEC Interval_48583 chr13 100494234 100494661 + 0 NA Intergenic Intergenic -17252 ENSMUSG00000021639.17 ENSMUSG00000021639 ENSMUST00000152049 Gtf2h2 protein_coding Interval_144858 chr7 28638617 28639105 + 0 NA intron (ENSMUSG00000108905.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000108905.1, intron 1 of 1) -3526 ENSMUSG00000108865.1 ENSMUSG00000108865 ENSMUST00000209122 Gm44617 processed_transcript Interval_49902 chr13 118046894 118047153 + 0 NA promoter-TSS (ENSMUSG00000114713.1) processed_pseudogene-promoter-TSS (ENSMUSG00000114713.1) -297 ENSMUSG00000114713.1 ENSMUSG00000114713 ENSMUST00000225643 Gm9633 processed_pseudogene Interval_128607 chr5 114275416 114276246 + 0 NA Intergenic Intergenic -2082 ENSMUSG00000042002.11 ENSMUSG00000042002 ENSMUST00000147953 Foxn4 protein_coding Interval_75051 chr17 62503408 62503608 + 0 NA Intergenic Intergenic -46388 ENSMUSG00000064570.1 ENSMUSG00000064570 ENSMUST00000082636 Gm25800 snoRNA Interval_3183 chr1 54556952 54558251 + 0 NA promoter-TSS (ENSMUSG00000073678.4) protein_coding-promoter-TSS (ENSMUSG00000073678.4) 26 ENSMUSG00000073678.4 ENSMUSG00000073678 ENSMUST00000189506 Pgap1 protein_coding Interval_131168 chr5 135560725 135561486 + 0 NA intron (ENSMUSG00000070464.1, intron 2 of 2) protein_coding-intron (ENSMUSG00000070464.1, intron 2 of 2) 2464 ENSMUSG00000070464.1 ENSMUSG00000070464 ENSMUST00000094226 Ccl26 protein_coding Interval_33024 chr11 113737932 113739639 + 0 NA intron (ENSMUSG00000041598.7, intron 1 of 1) protein_coding-intron (ENSMUSG00000041598.7, intron 1 of 1) 12369 ENSMUSG00000041598.7 ENSMUSG00000041598 ENSMUST00000153453 Cdc42ep4 protein_coding Interval_139231 chr6 97354869 97356878 + 0 NA intron (ENSMUSG00000030064.16, intron 2 of 7) protein_coding-intron (ENSMUSG00000030064.16, intron 5 of 22) -64612 ENSMUSG00000030064.16 ENSMUSG00000030064 ENSMUST00000124050 Frmd4b protein_coding Interval_35140 chr12 17527288 17527858 + 0 NA Intergenic Intergenic -17399 ENSMUSG00000011179.8 ENSMUSG00000011179 ENSMUST00000222250 Odc1 protein_coding Interval_75181 chr17 64446583 64446920 + 0 NA Intergenic Intergenic 5945 ENSMUSG00000098984.1 ENSMUSG00000098984 ENSMUST00000185032 Mir6420 miRNA Interval_32784 chr11 110550368 110550669 + 0 NA Intergenic Intergenic 6011 ENSMUSG00000085985.1 ENSMUSG00000085985 ENSMUST00000144689 Gm11682 lincRNA Interval_153474 chr7 145038790 145039106 + 0 NA Intergenic Intergenic -99023 ENSMUSG00000070348.5 ENSMUSG00000070348 ENSMUST00000135985 Ccnd1 protein_coding Interval_62141 chr15 87960293 87961051 + 0 NA Intergenic Intergenic -6744 ENSMUSG00000116061.1 ENSMUSG00000116061 ENSMUST00000229118 Gm49472 lincRNA Interval_53152 chr14 54748194 54748481 + 0 NA intron (ENSMUSG00000022180.7, intron 3 of 3) protein_coding-intron (ENSMUSG00000022180.7, intron 3 of 10) 33609 ENSMUSG00000022180.7 ENSMUSG00000022180 ENSMUST00000226646 Slc7a8 protein_coding Interval_168854 chr9 88087607 88087821 + 0 NA Intergenic Intergenic 35051 ENSMUSG00000099886.1 ENSMUSG00000099886 ENSMUST00000187464 Gm2324 processed_pseudogene Interval_7245 chr1 128196315 128196724 + 0 NA TTS (ENSMUSG00000056211.13) protein_coding-TTS (ENSMUSG00000056211.13) -5842 ENSMUSG00000065520.2 ENSMUSG00000065520 ENSMUST00000083586 Mir128-1 miRNA Interval_34526 chr12 4902027 4902411 + 0 NA intron (ENSMUSG00000020634.12, intron 2 of 6) protein_coding-intron (ENSMUSG00000020634.12, intron 2 of 6) 5045 ENSMUSG00000020634.12 ENSMUSG00000020634 ENSMUST00000141360 Ubxn2a protein_coding Interval_17622 chr10 78272637 78273446 + 0 NA TTS (ENSMUSG00000001211.15) protein_coding-TTS (ENSMUSG00000001211.15) -6966 ENSMUSG00000112300.1 ENSMUSG00000112300 ENSMUST00000218207 Gm47976 TEC Interval_120867 chr4 151158229 151158629 + 0 NA intron (ENSMUSG00000014592.21, intron 7 of 24) protein_coding-intron (ENSMUSG00000014592.21, intron 7 of 23) 68859 ENSMUSG00000078491.2 ENSMUSG00000078491 ENSMUST00000105667 Gm13090 protein_coding Interval_133928 chr6 15742841 15744007 + 0 NA intron (ENSMUSG00000041390.18, intron 3 of 4) protein_coding-intron (ENSMUSG00000041390.18, intron 3 of 4) 22763 ENSMUSG00000041390.18 ENSMUSG00000041390 ENSMUST00000128849 Mdfic protein_coding Interval_160213 chr8 107178369 107178976 + 0 NA intron (ENSMUSG00000031924.4, intron 3 of 4) protein_coding-intron (ENSMUSG00000031924.4, intron 3 of 4) 12757 ENSMUSG00000031924.4 ENSMUSG00000031924 ENSMUST00000212920 Cyb5b protein_coding Interval_38543 chr12 80010070 80010829 + 0 NA Intergenic Intergenic -30598 ENSMUSG00000112292.1 ENSMUSG00000112292 ENSMUST00000219732 Gm8275 processed_pseudogene Interval_12648 chr10 4134980 4135280 + 0 NA intron (ENSMUSG00000040675.17, intron 26 of 27) protein_coding-intron (ENSMUSG00000040675.17, intron 26 of 27) 30817 ENSMUSG00000065792.1 ENSMUSG00000065792 ENSMUST00000083858 Gm25515 snRNA Interval_114355 chr4 74245424 74245673 + 0 NA intron (ENSMUSG00000028397.13, intron 1 of 21) protein_coding-intron (ENSMUSG00000028397.13, intron 1 of 21) 6166 ENSMUSG00000085482.1 ENSMUSG00000085482 ENSMUST00000126646 A230083N12Rik antisense Interval_171238 chr9 115536468 115538227 + 0 NA Intergenic Intergenic 89371 ENSMUSG00000094630.1 ENSMUSG00000094630 ENSMUST00000082810 n-R5s92 rRNA Interval_115215 chr4 94512556 94512820 + 0 NA intron (ENSMUSG00000028578.8, intron 5 of 5) protein_coding-intron (ENSMUSG00000028578.8, intron 5 of 5) 15656 ENSMUSG00000083359.1 ENSMUSG00000083359 ENSMUST00000118149 Gm12656 processed_pseudogene Interval_105327 chr3 84971288 84972187 + 0 NA intron (ENSMUSG00000028086.15, intron 9 of 12) protein_coding-intron (ENSMUSG00000028086.15, intron 7 of 10) 97846 ENSMUSG00000102919.1 ENSMUSG00000102919 ENSMUST00000193246 Gm37726 TEC Interval_164885 chr9 42807621 42808820 + 0 NA intron (ENSMUSG00000032017.14, intron 3 of 20) protein_coding-intron (ENSMUSG00000032017.14, intron 1 of 18) 53909 ENSMUSG00000076355.2 ENSMUSG00000076355 ENSMUST00000102400 Gm27509 miRNA Interval_32978 chr11 113483797 113485302 + 0 NA intron (ENSMUSG00000041654.15, intron 4 of 4) protein_coding-intron (ENSMUSG00000041654.15, intron 5 of 10) 16572 ENSMUSG00000078251.2 ENSMUSG00000078251 ENSMUST00000105048 Gm16487 pseudogene Interval_167818 chr9 72871440 72872690 + 0 NA TTS (ENSMUSG00000102971.1) TEC-TTS (ENSMUSG00000102971.1) 2413 ENSMUSG00000102971.1 ENSMUSG00000102971 ENSMUST00000192843 A730062M13Rik TEC Interval_86276 chr19 38332822 38333506 + 0 NA Intergenic Intergenic 9450 ENSMUSG00000118381.1 ENSMUSG00000118381 ENSMUST00000237671 Gm50150 processed_pseudogene Interval_37652 chr12 70848579 70849723 + 0 NA intron (ENSMUSG00000048285.9, intron 1 of 11) protein_coding-intron (ENSMUSG00000048285.9, intron 1 of 13) 23462 ENSMUSG00000048285.9 ENSMUSG00000048285 ENSMUST00000222045 Frmd6 protein_coding Interval_90248 chr2 29309184 29310429 + 0 NA Intergenic Intergenic -56813 ENSMUSG00000079499.9 ENSMUSG00000079499 ENSMUST00000028141 6530402F18Rik processed_transcript Interval_69204 chr16 91320234 91321659 + 0 NA intron (ENSMUSG00000085865.2, intron 1 of 2) lincRNA-intron (ENSMUSG00000085865.2, intron 1 of 1) 8051 ENSMUSG00000085865.2 ENSMUSG00000085865 ENSMUST00000146994 Gm15966 lincRNA Interval_26524 chr11 58376909 58377350 + 0 NA Intergenic Intergenic -1914 ENSMUSG00000013643.13 ENSMUSG00000013643 ENSMUST00000108826 Lypd8 protein_coding Interval_68317 chr16 73014264 73014848 + 0 NA intron (ENSMUSG00000022883.11, intron 24 of 28) protein_coding-intron (ENSMUSG00000022883.11, intron 24 of 28) 38207 ENSMUSG00000022883.11 ENSMUSG00000022883 ENSMUST00000232432 Robo1 protein_coding Interval_100635 chr2 170627897 170628429 + 0 NA Intergenic Intergenic -26146 ENSMUSG00000043583.1 ENSMUSG00000043583 ENSMUST00000062355 4930470P17Rik protein_coding Interval_60382 chr15 73397240 73397507 + 0 NA intron (ENSMUSG00000022607.18, intron 1 of 3) protein_coding-intron (ENSMUSG00000022607.18, intron 1 of 31) 10866 ENSMUSG00000115602.1 ENSMUSG00000115602 ENSMUST00000228413 Gm7908 processed_pseudogene Interval_81384 chr18 60073936 60074384 + 0 NA Intergenic Intergenic -100157 ENSMUSG00000094901.1 ENSMUSG00000094901 ENSMUST00000179918 Gm23576 miRNA Interval_79345 chr18 30810166 30810955 + 0 NA Intergenic Intergenic -201670 ENSMUSG00000117526.1 ENSMUSG00000117526 ENSMUST00000235078 Gm41780 processed_pseudogene Interval_98076 chr2 147655577 147655836 + 0 NA Intergenic Intergenic -12309 ENSMUSG00000081741.1 ENSMUSG00000081741 ENSMUST00000119382 Gm14106 processed_pseudogene Interval_170521 chr9 108490105 108492553 + 0 NA TTS (ENSMUSG00000052911.9) protein_coding-TTS (ENSMUSG00000052911.9) -5018 ENSMUSG00000006676.16 ENSMUSG00000006676 ENSMUST00000193975 Usp19 protein_coding Interval_101698 chr3 8999857 9000130 + 0 NA intron (ENSMUSG00000027506.15, intron 1 of 3) protein_coding-intron (ENSMUSG00000027506.15, intron 1 of 6) 4485 ENSMUSG00000027506.15 ENSMUSG00000027506 ENSMUST00000155450 Tpd52 protein_coding Interval_169071 chr9 91456616 91457367 + 0 NA intron (ENSMUSG00000100341.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000100341.1, intron 1 of 2) 52517 ENSMUSG00000100341.1 ENSMUSG00000100341 ENSMUST00000191272 Gm29478 lincRNA Interval_45425 chr13 55099506 55100447 + 0 NA intron (ENSMUSG00000025878.16, intron 1 of 13) protein_coding-intron (ENSMUSG00000025878.16, intron 1 of 14) 278 ENSMUSG00000025878.16 ENSMUSG00000025878 ENSMUST00000124561 Uimc1 protein_coding Interval_45644 chr13 56475178 56475968 + 0 NA Intergenic Intergenic 6673 ENSMUSG00000021538.3 ENSMUSG00000021538 ENSMUST00000022019 Il9 protein_coding Interval_154053 chr8 12301975 12303137 + 0 NA Intergenic Intergenic 16924 ENSMUSG00000110412.1 ENSMUSG00000110412 ENSMUST00000211562 Gm33175 lincRNA Interval_124655 chr5 52871927 52872767 + 0 NA Intergenic Intergenic 17000 ENSMUSG00000029176.13 ENSMUSG00000029176 ENSMUST00000138629 Anapc4 protein_coding Interval_141419 chr6 128132795 128134869 + 0 NA intron (ENSMUSG00000030352.15, intron 1 of 6) protein_coding-intron (ENSMUSG00000030352.15, intron 1 of 8) 33090 ENSMUSG00000108220.1 ENSMUSG00000108220 ENSMUST00000204623 Gm44056 TEC Interval_24788 chr11 37925472 37925822 + 0 NA Intergenic Intergenic 111616 ENSMUSG00000093184.1 ENSMUSG00000093184 ENSMUST00000175443 Gm25693 miRNA Interval_156809 chr8 60651789 60652145 + 0 NA intron (ENSMUSG00000031647.10, intron 1 of 1) protein_coding-intron (ENSMUSG00000031647.10, intron 1 of 2) -3137 ENSMUSG00000031647.10 ENSMUSG00000031647 ENSMUST00000034066 Mfap3l protein_coding Interval_16753 chr10 67943185 67943858 + 0 NA Intergenic Intergenic 30187 ENSMUSG00000112899.1 ENSMUSG00000112899 ENSMUST00000219339 4930521O17Rik lincRNA Interval_29222 chr11 81661679 81662030 + 0 NA intron (ENSMUSG00000020704.13, intron 1 of 9) protein_coding-intron (ENSMUSG00000020704.13, intron 1 of 9) 74493 ENSMUSG00000087534.1 ENSMUSG00000087534 ENSMUST00000156193 Gm11418 antisense Interval_53060 chr14 54107064 54109266 + 0 NA intron (ENSMUSG00000104658.4, intron 2 of 2) antisense-intron (ENSMUSG00000104658.4, intron 2 of 2) -5303 ENSMUSG00000096749.2 ENSMUSG00000096749 ENSMUST00000179664 Trdd1 TR_D_gene Interval_107192 chr3 104484408 104484958 + 0 NA intron (ENSMUSG00000032913.13, intron 8 of 17) protein_coding-intron (ENSMUSG00000032913.13, intron 8 of 17) -4810 ENSMUSG00000032913.13 ENSMUSG00000032913 ENSMUST00000198452 Lrig2 protein_coding Interval_164345 chr9 35541212 35542166 + 0 NA exon (ENSMUSG00000032101.6, exon 12 of 12) protein_coding-exon (ENSMUSG00000032101.6, exon 12 of 12) 16839 ENSMUSG00000032101.6 ENSMUSG00000032101 ENSMUST00000034612 Ddx25 protein_coding Interval_58993 chr15 41461450 41462291 + 0 NA intron (ENSMUSG00000022307.16, intron 1 of 15) protein_coding-intron (ENSMUSG00000022307.16, intron 1 of 15) -218712 ENSMUSG00000116178.1 ENSMUSG00000116178 ENSMUST00000229823 Gm49529 processed_pseudogene Interval_164050 chr9 31159543 31160190 + 0 NA intron (ENSMUSG00000031996.17, intron 1 of 2) protein_coding-intron (ENSMUSG00000031996.17, intron 11 of 16) 1456 ENSMUSG00000031996.17 ENSMUSG00000031996 ENSMUST00000213273 Aplp2 protein_coding Interval_100440 chr2 169028486 169029792 + 0 NA Intergenic Intergenic 9114 ENSMUSG00000052368.2 ENSMUSG00000052368 ENSMUST00000063891 Gm9873 lincRNA Interval_142060 chr6 136852590 136852877 + 0 NA intron (ENSMUSG00000030217.2, intron 2 of 2) protein_coding-intron (ENSMUSG00000030217.2, intron 2 of 2) -4484 ENSMUSG00000107899.1 ENSMUSG00000107899 ENSMUST00000204898 Gm44069 TEC Interval_76283 chr17 78709998 78710523 + 0 NA intron (ENSMUSG00000024077.15, intron 1 of 17) protein_coding-intron (ENSMUSG00000024077.15, intron 1 of 17) 26936 ENSMUSG00000024077.15 ENSMUSG00000024077 ENSMUST00000145480 Strn protein_coding Interval_10856 chr1 176085074 176085271 + 0 NA intron (ENSMUSG00000055214.15, intron 2 of 8) protein_coding-intron (ENSMUSG00000055214.15, intron 3 of 9) -52449 ENSMUSG00000104363.1 ENSMUSG00000104363 ENSMUST00000192680 Gm38081 TEC Interval_106745 chr3 100334485 100334744 + 0 NA Intergenic Intergenic 31326 ENSMUSG00000064573.1 ENSMUSG00000064573 ENSMUST00000082639 Gm25802 snoRNA Interval_144781 chr7 28208613 28209536 + 0 NA Intergenic Intergenic -17284 ENSMUSG00000108968.1 ENSMUSG00000108968 ENSMUST00000207620 Gm45011 TEC Interval_151862 chr7 127183994 127184330 + 0 NA Intergenic Intergenic -6865 ENSMUSG00000092905.2 ENSMUSG00000092905 ENSMUST00000175164 Gm25735 misc_RNA Interval_165427 chr9 47763654 47764792 + 0 NA intron (ENSMUSG00000032076.20, intron 1 of 8) protein_coding-intron (ENSMUSG00000032076.20, intron 1 of 8) -6918 ENSMUSG00000110959.1 ENSMUSG00000110959 ENSMUST00000214736 Gm47198 TEC Interval_39280 chr12 86440830 86441700 + 0 NA intron (ENSMUSG00000021255.17, intron 1 of 6) protein_coding-intron (ENSMUSG00000021255.17, intron 1 of 6) -28852 ENSMUSG00000021255.17 ENSMUSG00000021255 ENSMUST00000136464 Esrrb protein_coding Interval_72861 chr17 32746402 32746718 + 0 NA TTS (ENSMUSG00000117581.1) processed_pseudogene-TTS (ENSMUSG00000117581.1) 1378 ENSMUSG00000117581.1 ENSMUSG00000117581 ENSMUST00000235016 Gm17948 processed_pseudogene Interval_39685 chr12 92251454 92251693 + 0 NA Intergenic Intergenic 32196 ENSMUSG00000114085.1 ENSMUSG00000114085 ENSMUST00000220602 Gm6841 processed_pseudogene Interval_84170 chr19 8172799 8173027 + 0 NA intron (ENSMUSG00000075044.14, intron 6 of 10) protein_coding-intron (ENSMUSG00000075044.14, intron 5 of 9) -40931 ENSMUSG00000063590.3 ENSMUSG00000063590 ENSMUST00000065651 Slc22a28 protein_coding Interval_166174 chr9 57254680 57255171 + 0 NA TTS (ENSMUSG00000032300.7) protein_coding-TTS (ENSMUSG00000032300.7) 6584 ENSMUSG00000032300.7 ENSMUSG00000032300 ENSMUST00000217657 1700017B05Rik protein_coding Interval_126415 chr5 88294089 88294390 + 0 NA Intergenic Intergenic -23073 ENSMUSG00000064156.8 ENSMUSG00000064156 ENSMUST00000170832 Prol1 protein_coding Interval_33647 chr11 117728077 117728474 + 0 NA intron (ENSMUSG00000025571.13, intron 5 of 20) protein_coding-intron (ENSMUSG00000025571.13, intron 5 of 21) -20956 ENSMUSG00000025571.13 ENSMUSG00000025571 ENSMUST00000141287 Tnrc6c protein_coding Interval_23558 chr11 23357388 23358886 + 0 NA intron (ENSMUSG00000056342.16, intron 10 of 79) protein_coding-intron (ENSMUSG00000056342.16, intron 10 of 79) 51242 ENSMUSG00000056342.16 ENSMUSG00000056342 ENSMUST00000125701 Usp34 protein_coding Interval_101214 chr2 179539266 179540153 + 0 NA intron (ENSMUSG00000000305.12, intron 2 of 2) protein_coding-intron (ENSMUSG00000000305.12, intron 2 of 15) 73858 ENSMUSG00000083410.1 ENSMUSG00000083410 ENSMUST00000120800 Gm14300 processed_pseudogene Interval_109117 chr3 135906627 135906957 + 0 NA intron (ENSMUSG00000104710.1, intron 2 of 3) antisense-intron (ENSMUSG00000104710.1, intron 2 of 3) -3951 ENSMUSG00000106141.1 ENSMUSG00000106141 ENSMUST00000199246 Gm18330 processed_pseudogene Interval_55260 chr14 79749322 79750066 + 0 NA Intergenic Intergenic 11263 ENSMUSG00000076453.1 ENSMUSG00000076453 ENSMUST00000103254 Mir759 miRNA Interval_149767 chr7 101354327 101355444 + 0 NA promoter-TSS (ENSMUSG00000109656.1) TEC-promoter-TSS (ENSMUSG00000109656.1) -446 ENSMUSG00000109656.1 ENSMUSG00000109656 ENSMUST00000210076 Gm45548 TEC Interval_150963 chr7 116791999 116793171 + 0 NA Intergenic Intergenic 11914 ENSMUSG00000108740.1 ENSMUSG00000108740 ENSMUST00000206542 Gm6008 processed_pseudogene Interval_65046 chr16 18686930 18688013 + 0 NA Intergenic Intergenic -5255 ENSMUSG00000116825.1 ENSMUSG00000116825 ENSMUST00000231787 Rps2-ps7 processed_pseudogene Interval_60874 chr15 77291551 77291931 + 0 NA intron (ENSMUSG00000033565.18, intron 1 of 13) protein_coding-intron (ENSMUSG00000033565.18, intron 1 of 12) -49190 ENSMUSG00000089242.1 ENSMUSG00000089242 ENSMUST00000158617 Gm24056 snRNA Interval_116266 chr4 109150062 109151047 + 0 NA intron (ENSMUSG00000028559.17, intron 2 of 22) protein_coding-intron (ENSMUSG00000028559.17, intron 3 of 23) 10643 ENSMUSG00000088014.1 ENSMUSG00000088014 ENSMUST00000157389 Gm23743 misc_RNA Interval_14398 chr10 32943103 32943722 + 0 NA Intergenic Intergenic -3727 ENSMUSG00000112469.1 ENSMUSG00000112469 ENSMUST00000218959 Gm47823 lincRNA Interval_94428 chr2 91142478 91142756 + 0 NA TTS (ENSMUSG00000040687.16) protein_coding-TTS (ENSMUSG00000040687.16) -3361 ENSMUSG00000040687.16 ENSMUSG00000040687 ENSMUST00000150517 Madd protein_coding Interval_102073 chr3 16468083 16468914 + 0 NA Intergenic Intergenic 285262 ENSMUSG00000047213.14 ENSMUSG00000047213 ENSMUST00000108346 Ythdf3 protein_coding Interval_37182 chr12 59228019 59228325 + 0 NA Intergenic Intergenic 9004 ENSMUSG00000098820.1 ENSMUSG00000098820 ENSMUST00000184357 Gm27284 miRNA Interval_33325 chr11 115939440 115940280 + 0 NA intron (ENSMUSG00000020755.9, intron 2 of 3) protein_coding-intron (ENSMUSG00000020755.9, intron 3 of 9) 6287 ENSMUSG00000020755.9 ENSMUSG00000020755 ENSMUST00000021101 Sap30bp protein_coding Interval_159342 chr8 93932835 93933562 + 0 NA TTS (ENSMUSG00000093005.1) miRNA-TTS (ENSMUSG00000093005.1) 738 ENSMUSG00000093005.1 ENSMUSG00000093005 ENSMUST00000175264 Gm24159 miRNA Interval_91557 chr2 43240722 43241309 + 0 NA Intergenic Intergenic 278383 ENSMUSG00000080994.2 ENSMUSG00000080994 ENSMUST00000119418 Gm13464 processed_pseudogene Interval_56278 chr14 116132290 116132760 + 0 NA intron (ENSMUSG00000022112.14, intron 7 of 7) protein_coding-intron (ENSMUSG00000022112.14, intron 7 of 7) -261247 ENSMUSG00000093497.1 ENSMUSG00000093497 ENSMUST00000176344 Gm20713 processed_transcript Interval_640 chr1 9367059 9367877 + 0 NA Intergenic Intergenic 31219 ENSMUSG00000101571.2 ENSMUSG00000101571 ENSMUST00000040649 Gm6187 processed_pseudogene Interval_116064 chr4 107360598 107360976 + 0 NA TTS (ENSMUSG00000057375.13) protein_coding-TTS (ENSMUSG00000057375.13) -9434 ENSMUSG00000086041.1 ENSMUSG00000086041 ENSMUST00000156265 Gm12869 antisense Interval_130568 chr5 128896874 128897196 + 0 NA intron (ENSMUSG00000029420.14, intron 1 of 20) protein_coding-intron (ENSMUSG00000029420.14, intron 1 of 21) 111511 ENSMUSG00000029428.13 ENSMUSG00000029428 ENSMUST00000199813 Stx2 protein_coding Interval_78049 chr18 7508392 7509224 + 0 NA intron (ENSMUSG00000057440.8, intron 3 of 12) protein_coding-intron (ENSMUSG00000057440.8, intron 3 of 16) -40179 ENSMUSG00000117556.1 ENSMUSG00000117556 ENSMUST00000234527 Gm18948 processed_pseudogene Interval_73221 chr17 35652508 35653884 + 0 NA intron (ENSMUSG00000092389.2, intron 2 of 2) antisense-intron (ENSMUSG00000092389.2, intron 2 of 2) 1368 ENSMUSG00000092389.2 ENSMUSG00000092389 ENSMUST00000173162 Gm20483 antisense Interval_121572 chr5 3527178 3527602 + 0 NA exon (ENSMUSG00000040274.11, exon 8 of 8) protein_coding-exon (ENSMUSG00000040274.11, exon 8 of 8) -16647 ENSMUSG00000105656.1 ENSMUSG00000105656 ENSMUST00000198296 Gm43017 sense_intronic Interval_115024 chr4 88668104 88668752 + 0 NA Intergenic Intergenic 8496 ENSMUSG00000078355.1 ENSMUSG00000078355 ENSMUST00000105148 Ifna16 protein_coding Interval_152540 chr7 134021747 134023152 + 0 NA intron (ENSMUSG00000054555.11, intron 3 of 6) protein_coding-intron (ENSMUSG00000054555.11, intron 3 of 22) 77829 ENSMUSG00000108478.1 ENSMUSG00000108478 ENSMUST00000206856 Gm19514 TEC Interval_29004 chr11 79860613 79861061 + 0 NA promoter-TSS (ENSMUSG00000086474.2) lincRNA-promoter-TSS (ENSMUSG00000086474.2) 32878 ENSMUSG00000065283.1 ENSMUSG00000065283 ENSMUST00000083349 Gm24454 snoRNA Interval_67103 chr16 42993528 42993922 + 0 NA intron (ENSMUSG00000022708.16, intron 2 of 7) protein_coding-intron (ENSMUSG00000022708.16, intron 1 of 14) 38094 ENSMUSG00000081824.5 ENSMUSG00000081824 ENSMUST00000121906 Ndufs5-ps processed_pseudogene Interval_61585 chr15 82746958 82747396 + 0 NA Intergenic Intergenic -5061 ENSMUSG00000116071.1 ENSMUSG00000116071 ENSMUST00000229208 Gm49433 unprocessed_pseudogene Interval_140431 chr6 118036142 118036942 + 0 NA intron (ENSMUSG00000030134.11, intron 1 of 12) protein_coding-intron (ENSMUSG00000030134.11, intron 1 of 12) -29877 ENSMUSG00000030134.11 ENSMUSG00000030134 ENSMUST00000203482 Rasgef1a protein_coding Interval_29534 chr11 84737963 84739166 + 0 NA Intergenic Intergenic -18132 ENSMUSG00000085044.1 ENSMUSG00000085044 ENSMUST00000150735 1700109G15Rik lincRNA Interval_124569 chr5 51202213 51202597 + 0 NA Intergenic Intergenic 21269 ENSMUSG00000104635.1 ENSMUSG00000104635 ENSMUST00000199039 Gm44377 miRNA Interval_147599 chr7 68908461 68910576 + 0 NA exon (ENSMUSG00000109407.1, exon 3 of 3) lincRNA-exon (ENSMUSG00000109407.1, exon 3 of 3) 6490 ENSMUSG00000109407.1 ENSMUSG00000109407 ENSMUST00000208180 Gm34664 lincRNA Interval_174320 chrX 144363494 144364161 + 0 NA intron (ENSMUSG00000041718.16, intron 23 of 25) protein_coding-intron (ENSMUSG00000041718.16, intron 10 of 13) -42572 ENSMUSG00000080922.1 ENSMUSG00000080922 ENSMUST00000121333 Gm2214 processed_pseudogene Interval_87775 chr19 55787327 55788024 + 0 NA intron (ENSMUSG00000024985.20, intron 4 of 14) protein_coding-intron (ENSMUSG00000024985.20, intron 3 of 11) 45411 ENSMUSG00000024985.20 ENSMUSG00000024985 ENSMUST00000148666 Tcf7l2 protein_coding Interval_25301 chr11 46202193 46202406 + 0 NA intron (ENSMUSG00000020340.16, intron 28 of 30) protein_coding-intron (ENSMUSG00000020340.16, intron 28 of 30) 32212 ENSMUSG00000099331.1 ENSMUSG00000099331 ENSMUST00000183384 Mir7239 miRNA Interval_104764 chr3 71765301 71766196 + 0 NA Intergenic Intergenic 93230 ENSMUSG00000103815.1 ENSMUSG00000103815 ENSMUST00000192015 Gm19194 processed_pseudogene Interval_81288 chr18 57405084 57406104 + 0 NA exon (ENSMUSG00000117864.1, exon 1 of 4) processed_transcript-exon (ENSMUSG00000117864.1, exon 1 of 4) 179 ENSMUSG00000117864.1 ENSMUSG00000117864 ENSMUST00000238028 Gm19500 processed_transcript Interval_119367 chr4 137261596 137261817 + 0 NA Intergenic Intergenic -15783 ENSMUSG00000036856.4 ENSMUSG00000036856 ENSMUST00000045747 Wnt4 protein_coding Interval_42113 chr13 8937574 8939226 + 0 NA Intergenic Intergenic 2577 ENSMUSG00000061988.3 ENSMUSG00000061988 ENSMUST00000071184 Rpl10a-ps2 processed_pseudogene Interval_19108 chr10 94621975 94622250 + 0 NA intron (ENSMUSG00000112477.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000112477.1, intron 1 of 1) 1572 ENSMUSG00000112477.1 ENSMUSG00000112477 ENSMUST00000219287 Gm48657 lincRNA Interval_135497 chr6 39658973 39659537 + 0 NA intron (ENSMUSG00000002413.15, intron 3 of 3) protein_coding-intron (ENSMUSG00000002413.15, intron 8 of 21) -5290 ENSMUSG00000091313.1 ENSMUSG00000091313 ENSMUST00000168364 Fth-ps2 processed_pseudogene Interval_121644 chr5 4200099 4201571 + 0 NA Intergenic Intergenic 8468 ENSMUSG00000053178.5 ENSMUSG00000053178 ENSMUST00000177258 Mterf1b protein_coding Interval_114022 chr4 62544774 62545893 + 0 NA intron (ENSMUSG00000058046.1, intron 12 of 14) protein_coding-intron (ENSMUSG00000058046.1, intron 12 of 14) 19964 ENSMUSG00000058046.1 ENSMUSG00000058046 ENSMUST00000062145 4933430I17Rik protein_coding Interval_46882 chr13 73087957 73088223 + 0 NA Intergenic Intergenic -145305 ENSMUSG00000113952.1 ENSMUSG00000113952 ENSMUST00000223231 Rpl31-ps2 processed_pseudogene Interval_161062 chr8 117244547 117245152 + 0 NA Intergenic Intergenic 86712 ENSMUSG00000052557.11 ENSMUSG00000052557 ENSMUST00000162997 Gan protein_coding Interval_163066 chr9 14950622 14950965 + 0 NA intron (ENSMUSG00000110766.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000110766.1, intron 1 of 1) 1330 ENSMUSG00000110766.1 ENSMUSG00000110766 ENSMUST00000217210 Gm47214 lincRNA Interval_167065 chr9 65001822 65002133 + 0 NA intron (ENSMUSG00000033629.6, intron 5 of 10) protein_coding-intron (ENSMUSG00000033629.6, intron 5 of 10) 19716 ENSMUSG00000033629.6 ENSMUSG00000033629 ENSMUST00000036615 Hacd3 protein_coding Interval_46918 chr13 73396091 73396615 + 0 NA Intergenic Intergenic -48969 ENSMUSG00000113346.2 ENSMUSG00000113346 ENSMUST00000223470 Eprn lincRNA Interval_107621 chr3 108930267 108930557 + 0 NA Intergenic Intergenic -9647 ENSMUSG00000045662.17 ENSMUSG00000045662 ENSMUST00000196533 Henmt1 protein_coding Interval_91808 chr2 49754941 49755290 + 0 NA intron (ENSMUSG00000026764.15, intron 1 of 2) protein_coding-intron (ENSMUSG00000026764.15, intron 23 of 25) 22504 ENSMUSG00000026764.15 ENSMUSG00000026764 ENSMUST00000132968 Kif5c protein_coding Interval_3430 chr1 58296118 58296931 + 0 NA intron (ENSMUSG00000079554.2, intron 10 of 35) protein_coding-intron (ENSMUSG00000079554.2, intron 10 of 35) 18198 ENSMUSG00000079554.2 ENSMUSG00000079554 ENSMUST00000114366 Aox2 protein_coding Interval_164321 chr9 35326720 35327237 + 0 NA Intergenic Intergenic -19379 ENSMUSG00000111059.1 ENSMUSG00000111059 ENSMUST00000214038 Gm33838 lincRNA Interval_78645 chr18 16219645 16220033 + 0 NA Intergenic Intergenic 1529 ENSMUSG00000084643.1 ENSMUSG00000084643 ENSMUST00000122694 Gm24385 misc_RNA Interval_113370 chr4 53878484 53879094 + 0 NA TTS (ENSMUSG00000083985.3) processed_pseudogene-TTS (ENSMUSG00000083985.3) 864 ENSMUSG00000083985.3 ENSMUSG00000083985 ENSMUST00000116189 Gm12468 processed_pseudogene Interval_108494 chr3 127652009 127652279 + 0 NA Intergenic Intergenic 19009 ENSMUSG00000027967.8 ENSMUSG00000027967 ENSMUST00000029587 Neurog2 protein_coding Interval_149703 chr7 100798996 100799242 + 0 NA intron (ENSMUSG00000029461.17, intron 2 of 7) protein_coding-intron (ENSMUSG00000029461.17, intron 3 of 8) -12233 ENSMUSG00000109109.1 ENSMUSG00000109109 ENSMUST00000208745 Gm44953 TEC Interval_101283 chr2 180176871 180179368 + 0 NA promoter-TSS (ENSMUSG00000015647.9) protein_coding-promoter-TSS (ENSMUSG00000015647.9) -532 ENSMUSG00000015647.9 ENSMUSG00000015647 ENSMUST00000123906 Lama5 protein_coding Interval_63904 chr16 4496090 4496464 + 0 NA intron (ENSMUSG00000022519.14, intron 1 of 3) protein_coding-intron (ENSMUSG00000022519.14, intron 2 of 6) -43031 ENSMUSG00000083585.1 ENSMUSG00000083585 ENSMUST00000122114 Gm15885 processed_pseudogene Interval_88912 chr2 12708725 12709638 + 0 NA Intergenic Intergenic 11764 ENSMUSG00000104045.1 ENSMUSG00000104045 ENSMUST00000192277 Gm37565 lincRNA Interval_145077 chr7 29911950 29912489 + 0 NA exon (ENSMUSG00000099689.6, exon 3 of 5) protein_coding-exon (ENSMUSG00000099689.6, exon 3 of 5) 3996 ENSMUSG00000099689.6 ENSMUSG00000099689 ENSMUST00000186475 Zfp383 protein_coding Interval_100991 chr2 173991652 173992580 + 0 NA Intergenic Intergenic -7425 ENSMUSG00000081700.1 ENSMUSG00000081700 ENSMUST00000120437 Atp5k-ps2 processed_pseudogene Interval_97668 chr2 142535837 142536051 + 0 NA Intergenic Intergenic -34564 ENSMUSG00000081125.3 ENSMUSG00000081125 ENSMUST00000122220 Rpl26-ps5 processed_pseudogene Interval_96819 chr2 128573037 128573497 + 0 NA Intergenic Intergenic 14901 ENSMUSG00000082350.1 ENSMUSG00000082350 ENSMUST00000120483 Gm14008 processed_pseudogene Interval_8678 chr1 147234657 147234911 + 0 NA Intergenic Intergenic 47158 ENSMUSG00000102134.1 ENSMUSG00000102134 ENSMUST00000193584 Gm9931 TEC Interval_70724 chr17 13888045 13889133 + 0 NA promoter-TSS (ENSMUSG00000068036.16) protein_coding-promoter-TSS (ENSMUSG00000068036.16) 20973 ENSMUSG00000068036.16 ENSMUSG00000068036 ENSMUST00000124922 Afdn protein_coding Interval_38719 chr12 81549739 81550380 + 0 NA intron (ENSMUSG00000091947.1, intron 1 of 1) processed_transcript-intron (ENSMUSG00000091947.1, intron 1 of 1) -16701 ENSMUSG00000091587.1 ENSMUSG00000091587 ENSMUST00000165200 Gm17191 processed_transcript Interval_29208 chr11 81559958 81560682 + 0 NA intron (ENSMUSG00000020704.13, intron 1 of 9) protein_coding-intron (ENSMUSG00000020704.13, intron 1 of 9) 13153 ENSMUSG00000080980.1 ENSMUSG00000080980 ENSMUST00000117522 1700071K01Rik processed_pseudogene Interval_149841 chr7 101942812 101945640 + 0 NA intron (ENSMUSG00000066306.13, intron 1 of 13) protein_coding-intron (ENSMUSG00000066306.13, intron 1 of 13) 2287 ENSMUSG00000110150.1 ENSMUSG00000110150 ENSMUST00000211386 Gm8523 processed_pseudogene Interval_56469 chr14 118965177 118965383 + 0 NA intron (ENSMUSG00000022136.8, intron 4 of 11) protein_coding-intron (ENSMUSG00000022136.8, intron 4 of 11) 18480 ENSMUSG00000115220.1 ENSMUSG00000115220 ENSMUST00000227218 Gm49768 lincRNA Interval_69437 chr16 93453657 93454519 + 0 NA intron (ENSMUSG00000099968.7, intron 1 of 1) lincRNA-intron (ENSMUSG00000099968.7, intron 1 of 2) 4717 ENSMUSG00000099968.7 ENSMUSG00000099968 ENSMUST00000231859 1700029J03Rik lincRNA Interval_17018 chr10 70456643 70456920 + 0 NA intron (ENSMUSG00000043259.15, intron 4 of 10) protein_coding-intron (ENSMUSG00000043259.15, intron 3 of 13) 16075 ENSMUSG00000043259.15 ENSMUSG00000043259 ENSMUST00000062883 Fam13c protein_coding Interval_111330 chr4 19106260 19106774 + 0 NA intron (ENSMUSG00000073991.4, intron 1 of 9) protein_coding-intron (ENSMUSG00000073991.4, intron 1 of 9) 16009 ENSMUSG00000073991.4 ENSMUSG00000073991 ENSMUST00000137780 Cnbd1 protein_coding Interval_143939 chr7 18245584 18245778 + 0 NA exon (ENSMUSG00000054005.4, exon 1 of 5) protein_coding-exon (ENSMUSG00000054005.4, exon 1 of 5) 334 ENSMUSG00000054005.4 ENSMUSG00000054005 ENSMUST00000066780 Mill1 protein_coding Interval_165255 chr9 45805500 45807466 + 0 NA exon (ENSMUSG00000043987.18, exon 4 of 32) protein_coding-exon (ENSMUSG00000043987.18, exon 4 of 32) -7423 ENSMUSG00000110997.1 ENSMUSG00000110997 ENSMUST00000215216 2610028D06Rik TEC Interval_80982 chr18 52238910 52239128 + 0 NA Intergenic Intergenic -84412 ENSMUSG00000096863.1 ENSMUSG00000096863 ENSMUST00000178926 Gm22259 snRNA Interval_77757 chr18 3256089 3256294 + 0 NA Intergenic Intergenic -80547 ENSMUSG00000097746.2 ENSMUSG00000097746 ENSMUST00000234647 Gm6225 processed_transcript Interval_90321 chr2 29768552 29769346 + 0 NA intron (ENSMUSG00000039826.13, intron 6 of 6) protein_coding-intron (ENSMUSG00000039826.13, intron 6 of 6) 9637 ENSMUSG00000075425.10 ENSMUSG00000075425 ENSMUST00000113809 Gm13547 protein_coding Interval_29359 chr11 83426991 83428013 + 0 NA intron (ENSMUSG00000020686.12, intron 1 of 6) protein_coding-intron (ENSMUSG00000020686.12, intron 1 of 5) 1953 ENSMUSG00000020686.12 ENSMUSG00000020686 ENSMUST00000147301 Gas2l2 protein_coding Interval_54512 chr14 70368731 70369036 + 0 NA Intergenic Intergenic 8696 ENSMUSG00000058745.4 ENSMUSG00000058745 ENSMUST00000078149 Gm9174 processed_pseudogene Interval_30043 chr11 88857211 88858038 + 0 NA intron (ENSMUSG00000092399.1, intron 2 of 4) protein_coding-intron (ENSMUSG00000018428.15, intron 1 of 10) 6020 ENSMUSG00000092399.1 ENSMUSG00000092399 ENSMUST00000173677 4930556N13Rik antisense Interval_125505 chr5 67765048 67765379 + 0 NA intron (ENSMUSG00000037685.15, intron 11 of 33) protein_coding-intron (ENSMUSG00000037685.15, intron 11 of 36) -5883 ENSMUSG00000106859.1 ENSMUSG00000106859 ENSMUST00000201074 Gm42737 TEC Interval_94604 chr2 92588244 92588693 + 0 NA Intergenic Intergenic -3738 ENSMUSG00000099223.1 ENSMUSG00000099223 ENSMUST00000184009 Mir7221 miRNA Interval_46665 chr13 68492322 68492702 + 0 NA Intergenic Intergenic -1123 ENSMUSG00000113394.1 ENSMUSG00000113394 ENSMUST00000221886 Gm48436 lincRNA Interval_156573 chr8 52355319 52356932 + 0 NA promoter-TSS (ENSMUSG00000110013.1) lincRNA-promoter-TSS (ENSMUSG00000110013.1) -486 ENSMUSG00000110013.1 ENSMUSG00000110013 ENSMUST00000210977 1190028D05Rik lincRNA Interval_126926 chr5 97237347 97237659 + 0 NA Intergenic Intergenic -27325 ENSMUSG00000067161.6 ENSMUSG00000067161 ENSMUST00000086918 Gm5560 processed_pseudogene Interval_123646 chr5 34255339 34255821 + 0 NA intron (ENSMUSG00000037224.15, intron 1 of 3) protein_coding-intron (ENSMUSG00000037224.15, intron 1 of 12) -23024 ENSMUSG00000037224.15 ENSMUSG00000037224 ENSMUST00000114368 Zfyve28 protein_coding Interval_78947 chr18 22350244 22350679 + 0 NA intron (ENSMUSG00000045215.17, intron 1 of 13) protein_coding-intron (ENSMUSG00000045215.17, intron 1 of 12) 6215 ENSMUSG00000045215.17 ENSMUSG00000045215 ENSMUST00000097655 Asxl3 protein_coding Interval_66122 chr16 31768427 31768630 + 0 NA intron (ENSMUSG00000022770.17, intron 1 of 22) protein_coding-intron (ENSMUSG00000022770.17, intron 5 of 24) 7562 ENSMUSG00000116626.1 ENSMUSG00000116626 ENSMUST00000232512 Gm49705 TEC Interval_33676 chr11 117870225 117871095 + 0 NA promoter-TSS (ENSMUSG00000085434.1) antisense-promoter-TSS (ENSMUSG00000085434.1) -590 ENSMUSG00000085434.1 ENSMUSG00000085434 ENSMUST00000125607 Gm11725 antisense Interval_88463 chr2 5340189 5340410 + 0 NA intron (ENSMUSG00000039145.16, intron 5 of 10) protein_coding-intron (ENSMUSG00000039145.16, intron 5 of 10) 56649 ENSMUSG00000080820.1 ENSMUSG00000080820 ENSMUST00000117204 Gm13197 processed_pseudogene Interval_168910 chr9 88529076 88529341 + 0 NA Intergenic Intergenic -2414 ENSMUSG00000084703.1 ENSMUSG00000084703 ENSMUST00000122754 Gm22985 snRNA Interval_136531 chr6 55200545 55201681 + 0 NA Intergenic Intergenic -2270 ENSMUSG00000038022.11 ENSMUSG00000038022 ENSMUST00000203225 Mindy4 protein_coding Interval_97930 chr2 145862063 145862898 + 0 NA promoter-TSS (ENSMUSG00000001768.16) protein_coding-promoter-TSS (ENSMUSG00000001768.16) -15806 ENSMUSG00000092758.1 ENSMUSG00000092758 ENSMUST00000175017 Gm25026 miRNA Interval_28975 chr11 79673612 79674115 + 0 NA TTS (ENSMUSG00000086569.1) antisense-TTS (ENSMUSG00000086569.1) 1220 ENSMUSG00000086569.1 ENSMUSG00000086569 ENSMUST00000123067 Rab11fip4os2 antisense Interval_127482 chr5 104373895 104375664 + 0 NA Intergenic Intergenic 49450 ENSMUSG00000053863.3 ENSMUSG00000053863 ENSMUST00000066207 Mepe protein_coding Interval_15742 chr10 55574869 55575149 + 0 NA Intergenic Intergenic 450647 ENSMUSG00000112755.1 ENSMUSG00000112755 ENSMUST00000219650 Gm46190 processed_pseudogene Interval_49863 chr13 117289254 117290125 + 0 NA Intergenic Intergenic -68617 ENSMUSG00000091423.2 ENSMUSG00000091423 ENSMUST00000238456 Gm17509 antisense Interval_8683 chr1 147679942 147680353 + 0 NA Intergenic Intergenic 164421 ENSMUSG00000104331.1 ENSMUSG00000104331 ENSMUST00000194803 Gm38284 TEC Interval_139310 chr6 98434842 98436396 + 0 NA Intergenic Intergenic -92960 ENSMUSG00000090667.2 ENSMUSG00000090667 ENSMUST00000204914 Gm765 protein_coding Interval_100678 chr2 171257012 171258335 + 0 NA intron (ENSMUSG00000084829.7, intron 2 of 4) lincRNA-intron (ENSMUSG00000084829.7, intron 2 of 3) 4389 ENSMUSG00000084829.7 ENSMUSG00000084829 ENSMUST00000146542 Gm14266 lincRNA Interval_90400 chr2 30183649 30187207 + 0 NA exon (ENSMUSG00000039648.14, exon 13 of 13) protein_coding-exon (ENSMUSG00000039648.14, exon 13 of 13) -7444 ENSMUSG00000039660.16 ENSMUSG00000039660 ENSMUST00000125141 Spout1 protein_coding Interval_107429 chr3 107594781 107596755 + 0 NA intron (ENSMUSG00000014603.3, intron 1 of 3) protein_coding-intron (ENSMUSG00000014603.3, intron 1 of 3) -4668 ENSMUSG00000014603.3 ENSMUSG00000014603 ENSMUST00000233202 Alx3 protein_coding Interval_6180 chr1 99774314 99774559 + 0 NA intron (ENSMUSG00000067028.11, intron 1 of 23) protein_coding-intron (ENSMUSG00000067028.11, intron 1 of 23) 16589 ENSMUSG00000082431.3 ENSMUSG00000082431 ENSMUST00000117372 Prdx2-ps1 processed_pseudogene Interval_165253 chr9 45798348 45799382 + 0 NA exon (ENSMUSG00000110997.1, exon 1 of 1) TEC-exon (ENSMUSG00000110997.1, exon 1 of 1) 195 ENSMUSG00000110997.1 ENSMUSG00000110997 ENSMUST00000215216 2610028D06Rik TEC Interval_156574 chr8 52455290 52456411 + 0 NA Intergenic Intergenic 98864 ENSMUSG00000109919.1 ENSMUSG00000109919 ENSMUST00000210293 Gm45673 processed_pseudogene Interval_73237 chr17 35721870 35722150 + 0 NA Intergenic Intergenic 17796 ENSMUSG00000092219.1 ENSMUSG00000092219 ENSMUST00000173840 Gm20443 lincRNA Interval_173296 chrX 77490193 77490520 + 0 NA Intergenic Intergenic -20858 ENSMUSG00000025246.13 ENSMUSG00000025246 ENSMUST00000133893 Tbl1x protein_coding Interval_164198 chr9 32414857 32415679 + 0 NA Intergenic Intergenic 30059 ENSMUSG00000041248.9 ENSMUSG00000041248 ENSMUST00000172015 Kcnj1 protein_coding Interval_46824 chr13 71689984 71690654 + 0 NA Intergenic Intergenic 65291 ENSMUSG00000113034.1 ENSMUSG00000113034 ENSMUST00000221533 Gm47812 processed_pseudogene Interval_102332 chr3 21963319 21964225 + 0 NA Intergenic Intergenic 34696 ENSMUSG00000106321.1 ENSMUSG00000106321 ENSMUST00000196313 Gm43674 lincRNA Interval_35154 chr12 17642969 17643296 + 0 NA Intergenic Intergenic 2073 ENSMUSG00000088939.1 ENSMUSG00000088939 ENSMUST00000158314 Gm25925 misc_RNA Interval_123855 chr5 35981630 35983121 + 0 NA intron (ENSMUSG00000029094.12, intron 11 of 14) protein_coding-intron (ENSMUSG00000029094.12, intron 11 of 16) -1813 ENSMUSG00000029094.12 ENSMUSG00000029094 ENSMUST00000201482 Afap1 protein_coding Interval_152916 chr7 139717865 139718058 + 0 NA Intergenic Intergenic -1438 ENSMUSG00000056777.5 ENSMUSG00000056777 ENSMUST00000072532 Rpl21-ps13 processed_pseudogene Interval_79293 chr18 30184786 30185381 + 0 NA Intergenic Intergenic -82166 ENSMUSG00000117465.1 ENSMUSG00000117465 ENSMUST00000234467 Gm49980 lincRNA Interval_103958 chr3 55494185 55494837 + 0 NA intron (ENSMUSG00000027797.15, intron 7 of 12) protein_coding-intron (ENSMUSG00000027797.15, intron 11 of 16) 10723 ENSMUSG00000106354.1 ENSMUSG00000106354 ENSMUST00000200221 Gm42607 TEC Interval_20489 chr10 117894717 117895733 + 0 NA Intergenic Intergenic -28510 ENSMUSG00000112711.1 ENSMUSG00000112711 ENSMUST00000217849 Gm32552 lincRNA Interval_155308 chr8 31128149 31129320 + 0 NA exon (ENSMUSG00000039328.11, exon 6 of 6) protein_coding-exon (ENSMUSG00000039328.11, exon 6 of 6) 16904 ENSMUSG00000039328.11 ENSMUSG00000039328 ENSMUST00000209547 Rnf122 protein_coding Interval_166194 chr9 57363644 57364291 + 0 NA Intergenic Intergenic 29839 ENSMUSG00000066626.5 ENSMUSG00000066626 ENSMUST00000085711 Gm5121 processed_pseudogene Interval_108260 chr3 123102999 123103639 + 0 NA intron (ENSMUSG00000050315.14, intron 1 of 1) protein_coding-intron (ENSMUSG00000050315.14, intron 4 of 4) -38969 ENSMUSG00000106012.1 ENSMUSG00000106012 ENSMUST00000196387 Gm43744 processed_pseudogene Interval_98649 chr2 153825684 153826520 + 0 NA promoter-TSS (ENSMUSG00000083097.3) processed_pseudogene-promoter-TSS (ENSMUSG00000083097.3) -69 ENSMUSG00000083097.3 ENSMUSG00000083097 ENSMUST00000118786 Gm14494 processed_pseudogene Interval_101558 chr3 5950094 5950442 + 0 NA Intergenic Intergenic 64673 ENSMUSG00000096130.1 ENSMUSG00000096130 ENSMUST00000179561 Gm25144 miRNA Interval_922 chr1 13199182 13199588 + 0 NA intron (ENSMUSG00000005886.14, intron 4 of 12) protein_coding-intron (ENSMUSG00000005886.14, intron 4 of 22) -19671 ENSMUSG00000103506.1 ENSMUSG00000103506 ENSMUST00000195493 Gm38376 TEC Interval_70380 chr17 9579419 9580582 + 0 NA intron (ENSMUSG00000117143.1, intron 2 of 2) lincRNA-intron (ENSMUSG00000117143.1, intron 2 of 2) 30309 ENSMUSG00000117143.1 ENSMUSG00000117143 ENSMUST00000232756 Gm49807 lincRNA Interval_86514 chr19 41313477 41314128 + 0 NA intron (ENSMUSG00000025017.10, intron 8 of 8) protein_coding-intron (ENSMUSG00000025017.10, intron 8 of 16) -49822 ENSMUSG00000025016.11 ENSMUSG00000025016 ENSMUST00000237871 Tm9sf3 protein_coding Interval_23857 chr11 27179402 27179601 + 0 NA Intergenic Intergenic -92366 ENSMUSG00000088654.1 ENSMUSG00000088654 ENSMUST00000158029 Gm24850 snoRNA Interval_41700 chr12 117860542 117861455 + 0 NA intron (ENSMUSG00000021175.15, intron 1 of 6) protein_coding-intron (ENSMUSG00000021175.15, intron 1 of 9) 17110 ENSMUSG00000021175.15 ENSMUSG00000021175 ENSMUST00000177339 Cdca7l protein_coding Interval_129338 chr5 119293067 119293547 + 0 NA Intergenic Intergenic -3938 ENSMUSG00000084548.1 ENSMUSG00000084548 ENSMUST00000122599 n-R5s175 rRNA Interval_117769 chr4 126125752 126125997 + 0 NA TTS (ENSMUSG00000042608.15) protein_coding-TTS (ENSMUSG00000042608.15) -20105 ENSMUSG00000086961.1 ENSMUSG00000086961 ENSMUST00000122969 Gm12946 antisense Interval_48908 chr13 104636190 104636409 + 0 NA intron (ENSMUSG00000021715.12, intron 13 of 13) protein_coding-intron (ENSMUSG00000021715.12, intron 13 of 13) -48632 ENSMUSG00000084860.1 ENSMUSG00000084860 ENSMUST00000131215 2610204G07Rik antisense Interval_174145 chrX 136244724 136246563 + 0 NA promoter-TSS (ENSMUSG00000042712.10) protein_coding-promoter-TSS (ENSMUSG00000042712.10) -40 ENSMUSG00000042712.10 ENSMUSG00000042712 ENSMUST00000113115 Tceal9 protein_coding Interval_94793 chr2 94370839 94372482 + 0 NA intron (ENSMUSG00000027194.16, intron 9 of 24) protein_coding-intron (ENSMUSG00000027194.16, intron 9 of 19) 13438 ENSMUSG00000081476.1 ENSMUSG00000081476 ENSMUST00000117207 Itpa-ps1 processed_pseudogene Interval_54520 chr14 70434869 70435470 + 0 NA Intergenic Intergenic -6105 ENSMUSG00000033644.5 ENSMUSG00000033644 ENSMUST00000226426 Piwil2 protein_coding Interval_157653 chr8 72099321 72100391 + 0 NA promoter-TSS (ENSMUSG00000061561.5) protein_coding-promoter-TSS (ENSMUSG00000061561.5) -7184 ENSMUSG00000046881.7 ENSMUSG00000046881 ENSMUST00000209675 Olfr374 protein_coding Interval_147623 chr7 70295514 70295729 + 0 NA intron (ENSMUSG00000109097.1, intron 1 of 3) lincRNA-intron (ENSMUSG00000109097.1, intron 1 of 3) 42222 ENSMUSG00000109097.1 ENSMUSG00000109097 ENSMUST00000207682 Gm29683 lincRNA Interval_145093 chr7 29985696 29986034 + 0 NA intron (ENSMUSG00000074221.12, intron 2 of 7) protein_coding-intron (ENSMUSG00000074221.12, intron 1 of 8) 609 ENSMUSG00000074221.12 ENSMUSG00000074221 ENSMUST00000177931 Zfp568 protein_coding Interval_38046 chr12 74926142 74927118 + 0 NA intron (ENSMUSG00000034402.3, intron 10 of 10) protein_coding-intron (ENSMUSG00000034402.3, intron 10 of 10) 83892 ENSMUSG00000113974.1 ENSMUSG00000113974 ENSMUST00000221473 4930442G10Rik lincRNA Interval_18635 chr10 88724178 88725601 + 0 NA Intergenic Intergenic -5969 ENSMUSG00000060904.14 ENSMUSG00000060904 ENSMUST00000080379 Arl1 protein_coding Interval_35461 chr12 22713671 22714499 + 0 NA Intergenic Intergenic 12505 ENSMUSG00000113569.1 ENSMUSG00000113569 ENSMUST00000220517 Gm48035 processed_pseudogene Interval_75752 chr17 71022375 71023333 + 0 NA exon (ENSMUSG00000024049.15, exon 2 of 37) protein_coding-exon (ENSMUSG00000024049.15, exon 2 of 37) 20221 ENSMUSG00000024049.15 ENSMUSG00000024049 ENSMUST00000233790 Myom1 protein_coding Interval_18152 chr10 83048466 83050112 + 0 NA intron (ENSMUSG00000034612.7, intron 1 of 2) protein_coding-intron (ENSMUSG00000034612.7, intron 1 of 2) -17594 ENSMUSG00000112084.1 ENSMUSG00000112084 ENSMUST00000218071 Gm10773 TEC Interval_15202 chr10 43315322 43315823 + 0 NA intron (ENSMUSG00000038240.13, intron 2 of 2) protein_coding-intron (ENSMUSG00000038240.13, intron 2 of 7) -3788 ENSMUSG00000089673.1 ENSMUSG00000089673 ENSMUST00000159442 Gm16546 processed_pseudogene Interval_165886 chr9 54215924 54217028 + 0 NA intron (ENSMUSG00000032274.9, intron 1 of 1) protein_coding-intron (ENSMUSG00000032274.9, intron 1 of 1) -34402 ENSMUSG00000032274.9 ENSMUSG00000032274 ENSMUST00000216974 Cyp19a1 protein_coding Interval_160079 chr8 106234373 106236143 + 0 NA exon (ENSMUSG00000060098.11, exon 6 of 6) protein_coding-exon (ENSMUSG00000060098.11, exon 6 of 6) 733 ENSMUSG00000060098.11 ENSMUSG00000060098 ENSMUST00000134151 Prmt7 protein_coding Interval_17361 chr10 76073722 76074779 + 0 NA intron (ENSMUSG00000020226.9, intron 9 of 14) protein_coding-intron (ENSMUSG00000020226.9, intron 9 of 14) -4367 ENSMUSG00000086798.1 ENSMUSG00000086798 ENSMUST00000124320 Gm16222 antisense Interval_67901 chr16 59089633 59089838 + 0 NA promoter-TSS (ENSMUSG00000094539.3) protein_coding-promoter-TSS (ENSMUSG00000094539.3) 87 ENSMUSG00000094539.3 ENSMUSG00000094539 ENSMUST00000078517 Olfr191 protein_coding Interval_127342 chr5 103257972 103258970 + 0 NA intron (ENSMUSG00000104956.1, intron 4 of 6) lincRNA-intron (ENSMUSG00000104956.1, intron 4 of 6) -15438 ENSMUSG00000104688.1 ENSMUSG00000104688 ENSMUST00000196923 Gm18702 processed_pseudogene Interval_95556 chr2 112251470 112251948 + 0 NA intron (ENSMUSG00000041358.1, intron 4 of 6) protein_coding-intron (ENSMUSG00000041358.1, intron 4 of 6) 7582 ENSMUSG00000041358.1 ENSMUSG00000041358 ENSMUST00000043970 Nutm1 protein_coding Interval_174375 chrX 150677536 150677833 + 0 NA Intergenic Intergenic -10461 ENSMUSG00000081396.1 ENSMUSG00000081396 ENSMUST00000118581 Gm15132 processed_pseudogene Interval_168446 chr9 80559698 80560400 + 0 NA intron (ENSMUSG00000111510.2, intron 1 of 1) lincRNA-intron (ENSMUSG00000111510.2, intron 1 of 1) 41048 ENSMUSG00000111510.2 ENSMUSG00000111510 ENSMUST00000214415 Gm48387 lincRNA Interval_109387 chr3 141378656 141379059 + 0 NA Intergenic Intergenic 86476 ENSMUSG00000089737.1 ENSMUSG00000089737 ENSMUST00000161394 Gm15688 antisense Interval_86347 chr19 38917085 38917511 + 0 NA intron (ENSMUSG00000048720.8, intron 10 of 10) protein_coding-intron (ENSMUSG00000048720.8, intron 12 of 12) -14092 ENSMUSG00000025001.11 ENSMUSG00000025001 ENSMUST00000127968 Hells protein_coding Interval_66213 chr16 32350842 32351181 + 0 NA intron (ENSMUSG00000053774.9, intron 1 of 2) protein_coding-intron (ENSMUSG00000053774.9, intron 1 of 10) 18746 ENSMUSG00000053774.9 ENSMUSG00000053774 ENSMUST00000232137 Ubxn7 protein_coding Interval_144078 chr7 19332761 19333297 + 0 NA promoter-TSS (ENSMUSG00000109366.1) lincRNA-promoter-TSS (ENSMUSG00000109366.1) -100 ENSMUSG00000109366.1 ENSMUSG00000109366 ENSMUST00000207382 Gm44698 lincRNA Interval_171762 chr9 120798528 120799385 + 0 NA Intergenic Intergenic 6965 ENSMUSG00000111270.1 ENSMUSG00000111270 ENSMUST00000216870 Gm47066 lincRNA Interval_109527 chr3 144013441 144014501 + 0 NA Intergenic Intergenic -59197 ENSMUSG00000105811.1 ENSMUSG00000105811 ENSMUST00000196620 Gm42707 lincRNA Interval_61292 chr15 80625642 80626991 + 0 NA intron (ENSMUSG00000042351.9, intron 2 of 7) protein_coding-intron (ENSMUSG00000042351.9, intron 1 of 6) 2794 ENSMUSG00000042351.9 ENSMUSG00000042351 ENSMUST00000230910 Grap2 protein_coding Interval_82490 chr18 74451983 74452284 + 0 NA intron (ENSMUSG00000025885.18, intron 1 of 39) protein_coding-intron (ENSMUSG00000025885.18, intron 1 of 38) 31328 ENSMUSG00000118303.1 ENSMUSG00000118303 ENSMUST00000235981 Gm50168 processed_pseudogene Interval_133705 chr6 9028391 9029121 + 0 NA intron (ENSMUSG00000046178.3, intron 2 of 2) protein_coding-intron (ENSMUSG00000046178.3, intron 1 of 1) 80325 ENSMUSG00000046178.3 ENSMUSG00000046178 ENSMUST00000060369 Nxph1 protein_coding Interval_27102 chr11 62909690 62910051 + 0 NA intron (ENSMUSG00000014177.10, intron 2 of 2) protein_coding-intron (ENSMUSG00000014177.10, intron 2 of 2) 11722 ENSMUSG00000086677.1 ENSMUSG00000086677 ENSMUST00000148598 Tvp23bos antisense Interval_119374 chr4 137308407 137308779 + 0 NA Intergenic Intergenic -16966 ENSMUSG00000089199.1 ENSMUSG00000089199 ENSMUST00000158574 Gm25772 snRNA Interval_135410 chr6 39187210 39189265 + 0 NA intron (ENSMUSG00000042599.8, intron 1 of 19) protein_coding-intron (ENSMUSG00000042599.8, intron 1 of 19) -18831 ENSMUSG00000115026.1 ENSMUSG00000115026 ENSMUST00000227758 Gm49041 bidirectional_promoter_lncRNA Interval_75982 chr17 74138064 74139021 + 0 NA Intergenic Intergenic 26032 ENSMUSG00000117031.1 ENSMUSG00000117031 ENSMUST00000233609 Gm49882 processed_pseudogene Interval_34412 chr12 3930568 3930961 + 0 NA TTS (ENSMUSG00000112271.1) processed_pseudogene-TTS (ENSMUSG00000112271.1) 1276 ENSMUSG00000112271.1 ENSMUSG00000112271 ENSMUST00000220237 Gm9088 processed_pseudogene Interval_29800 chr11 86920204 86922912 + 0 NA Intergenic Intergenic 50466 ENSMUSG00000018427.8 ENSMUSG00000018427 ENSMUST00000238921 Ypel2 protein_coding Interval_171393 chr9 117355348 117355886 + 0 NA intron (ENSMUSG00000039607.17, intron 1 of 14) protein_coding-intron (ENSMUSG00000039607.17, intron 1 of 14) -47362 ENSMUSG00000092504.1 ENSMUSG00000092504 ENSMUST00000173358 Gm20396 processed_pseudogene Interval_170744 chr9 110488658 110489386 + 0 NA intron (ENSMUSG00000032489.17, intron 3 of 3) protein_coding-intron (ENSMUSG00000032489.17, intron 4 of 20) 12064 ENSMUSG00000032489.17 ENSMUSG00000032489 ENSMUST00000084952 Kif9 protein_coding Interval_155067 chr8 26104436 26104910 + 0 NA intron (ENSMUSG00000037234.17, intron 2 of 21) protein_coding-intron (ENSMUSG00000037234.17, intron 2 of 21) -14715 ENSMUSG00000013878.18 ENSMUSG00000013878 ENSMUST00000124867 Rnf170 protein_coding Interval_168872 chr9 88262190 88263399 + 0 NA exon (ENSMUSG00000100782.1, exon 3 of 3) lincRNA-exon (ENSMUSG00000100782.1, exon 3 of 3) 2899 ENSMUSG00000100782.1 ENSMUSG00000100782 ENSMUST00000190118 Gm28231 lincRNA Interval_71371 chr17 22753312 22754368 + 0 NA Intergenic Intergenic 13895 ENSMUSG00000098164.2 ENSMUSG00000098164 ENSMUST00000182063 Gm5493 lincRNA Interval_96493 chr2 125074986 125075263 + 0 NA intron (ENSMUSG00000035183.14, intron 1 of 3) protein_coding-intron (ENSMUSG00000035183.14, intron 2 of 8) -5231 ENSMUSG00000035183.14 ENSMUSG00000035183 ENSMUST00000149963 Slc24a5 protein_coding Interval_15485 chr10 48663379 48663676 + 0 NA Intergenic Intergenic 18330 ENSMUSG00000111436.1 ENSMUSG00000111436 ENSMUST00000214349 Gm47356 processed_pseudogene Interval_39058 chr12 84745446 84745707 + 0 NA Intergenic Intergenic 16964 ENSMUSG00000021242.9 ENSMUSG00000021242 ENSMUST00000221056 Npc2 protein_coding Interval_94252 chr2 86473174 86473418 + 0 NA TTS (ENSMUSG00000111736.1) unprocessed_pseudogene-TTS (ENSMUSG00000111736.1) 426 ENSMUSG00000111736.1 ENSMUSG00000111736 ENSMUST00000215939 Olfr1070-ps1 unprocessed_pseudogene Interval_70285 chr17 8196835 8198143 + 0 NA TTS (ENSMUSG00000069135.11) protein_coding-TTS (ENSMUSG00000069135.11) 31969 ENSMUSG00000069135.11 ENSMUSG00000069135 ENSMUST00000161898 Fgfr1op protein_coding Interval_80792 chr18 47110313 47110794 + 0 NA intron (ENSMUSG00000042705.9, intron 6 of 6) protein_coding-intron (ENSMUSG00000042705.9, intron 6 of 6) -1586 ENSMUSG00000117621.1 ENSMUSG00000117621 ENSMUST00000234633 Hspe1-rs1 protein_coding Interval_52377 chr14 45476497 45477220 + 0 NA intron (ENSMUSG00000037712.16, intron 4 of 5) protein_coding-intron (ENSMUSG00000037712.16, intron 4 of 14) 7111 ENSMUSG00000037712.16 ENSMUSG00000037712 ENSMUST00000149723 Fermt2 protein_coding Interval_52006 chr14 34569504 34570575 + 0 NA intron (ENSMUSG00000021798.14, intron 5 of 13) protein_coding-intron (ENSMUSG00000021798.14, intron 5 of 13) 18442 ENSMUSG00000021798.14 ENSMUSG00000021798 ENSMUST00000226226 Ldb3 protein_coding Interval_67803 chr16 57294889 57295132 + 0 NA Intergenic Intergenic -2159 ENSMUSG00000022753.15 ENSMUSG00000022753 ENSMUST00000120112 Tmem30c protein_coding Interval_171120 chr9 114638177 114638481 + 0 NA intron (ENSMUSG00000056167.8, intron 1 of 3) protein_coding-intron (ENSMUSG00000056167.8, intron 1 of 19) 1852 ENSMUSG00000056167.8 ENSMUSG00000056167 ENSMUST00000238809 Cnot10 protein_coding Interval_126052 chr5 77122678 77123287 + 0 NA promoter-TSS (ENSMUSG00000085858.1) lincRNA-promoter-TSS (ENSMUSG00000085858.1) -634 ENSMUSG00000085858.1 ENSMUSG00000085858 ENSMUST00000156195 Gm15831 lincRNA Interval_12576 chr10 3512886 3513135 + 0 NA Intergenic Intergenic -27278 ENSMUSG00000019762.4 ENSMUSG00000019762 ENSMUST00000141745 Iyd protein_coding Interval_127085 chr5 100185747 100186481 + 0 NA Intergenic Intergenic -10497 ENSMUSG00000103927.1 ENSMUSG00000103927 ENSMUST00000194154 Gm9932 lincRNA Interval_17847 chr10 80371464 80372082 + 0 NA promoter-TSS (ENSMUSG00000087432.1) antisense-promoter-TSS (ENSMUSG00000087432.1) -125 ENSMUSG00000087432.1 ENSMUSG00000087432 ENSMUST00000138988 Gm15123 antisense Interval_94166 chr2 84797848 84799798 + 0 NA promoter-TSS (ENSMUSG00000027078.14) protein_coding-promoter-TSS (ENSMUSG00000027078.14) -7406 ENSMUSG00000027078.14 ENSMUSG00000027078 ENSMUST00000159150 Ube2l6 protein_coding Interval_54508 chr14 70336157 70336698 + 0 NA intron (ENSMUSG00000022094.15, intron 1 of 3) protein_coding-intron (ENSMUSG00000022094.15, intron 1 of 9) -23760 ENSMUSG00000058745.4 ENSMUSG00000058745 ENSMUST00000078149 Gm9174 processed_pseudogene Interval_50517 chr14 14557839 14558038 + 0 NA Intergenic Intergenic 31278 ENSMUSG00000114676.1 ENSMUSG00000114676 ENSMUST00000225279 Gm47678 processed_pseudogene Interval_57693 chr15 15646265 15646474 + 0 NA Intergenic Intergenic -133625 ENSMUSG00000115266.1 ENSMUSG00000115266 ENSMUST00000226912 4930557F08Rik lincRNA Interval_142640 chr6 144497082 144497295 + 0 NA intron (ENSMUSG00000087157.1, intron 3 of 3) protein_coding-intron (ENSMUSG00000041540.16, intron 3 of 13) 15963 ENSMUSG00000087157.1 ENSMUSG00000087157 ENSMUST00000156443 Sox5os2 antisense Interval_114751 chr4 84757667 84758139 + 0 NA Intergenic Intergenic 16428 ENSMUSG00000086413.1 ENSMUSG00000086413 ENSMUST00000141637 Gm12415 lincRNA Interval_13420 chr10 18071627 18071973 + 0 NA intron (ENSMUSG00000019854.17, intron 1 of 5) protein_coding-intron (ENSMUSG00000019854.17, intron 1 of 19) -32412 ENSMUSG00000019854.17 ENSMUSG00000019854 ENSMUST00000150533 Reps1 protein_coding Interval_57143 chr15 6906605 6906959 + 0 NA Intergenic Intergenic -32525 ENSMUSG00000022146.12 ENSMUSG00000022146 ENSMUST00000177263 Osmr protein_coding Interval_101131 chr2 178246654 178247552 + 0 NA intron (ENSMUSG00000027525.18, intron 1 of 12) protein_coding-intron (ENSMUSG00000027525.18, intron 1 of 12) -80453 ENSMUSG00000027525.18 ENSMUSG00000027525 ENSMUST00000133267 Phactr3 protein_coding Interval_60456 chr15 73862330 73862543 + 0 NA Intergenic Intergenic 27875 ENSMUSG00000086361.1 ENSMUSG00000086361 ENSMUST00000154520 Gm6569 protein_coding Interval_165756 chr9 52215764 52216031 + 0 NA Intergenic Intergenic -47325 ENSMUSG00000035164.8 ENSMUSG00000035164 ENSMUST00000165519 Zc3h12c protein_coding Interval_29685 chr11 86031757 86032649 + 0 NA Intergenic Intergenic 81708 ENSMUSG00000081632.1 ENSMUSG00000081632 ENSMUST00000118790 Gm11443 processed_pseudogene Interval_131018 chr5 134576869 134577118 + 0 NA Intergenic Intergenic -4373 ENSMUSG00000023104.9 ENSMUSG00000023104 ENSMUST00000201464 Rfc2 protein_coding Interval_77531 chr17 90901901 90902119 + 0 NA intron (ENSMUSG00000024109.18, intron 1 of 12) protein_coding-intron (ENSMUSG00000024109.18, intron 4 of 20) 40841 ENSMUSG00000090160.1 ENSMUSG00000090160 ENSMUST00000162121 4930480K15Rik antisense Interval_74014 chr17 46062372 46063084 + 0 NA Intergenic Intergenic 21538 ENSMUSG00000117287.1 ENSMUSG00000117287 ENSMUST00000233284 Gm36200 lincRNA Interval_121127 chr4 153307959 153308275 + 0 NA Intergenic Intergenic 89941 ENSMUSG00000087454.1 ENSMUSG00000087454 ENSMUST00000126141 Gm13174 lincRNA Interval_82587 chr18 75319031 75319942 + 0 NA Intergenic Intergenic -22169 ENSMUSG00000102047.1 ENSMUSG00000102047 ENSMUST00000186356 2010010A06Rik transcribed_processed_pseudogene Interval_1804 chr1 33885258 33885481 + 0 NA intron (ENSMUSG00000042182.16, intron 1 of 2) protein_coding-intron (ENSMUSG00000042182.16, intron 1 of 6) -1889 ENSMUSG00000042182.16 ENSMUSG00000042182 ENSMUST00000139700 Bend6 protein_coding Interval_130962 chr5 134279946 134280723 + 0 NA promoter-TSS (ENSMUSG00000060261.15) protein_coding-promoter-TSS (ENSMUSG00000060261.15) -9598 ENSMUSG00000107000.1 ENSMUSG00000107000 ENSMUST00000201715 Gm43481 TEC Interval_32841 chr11 111574390 111574842 + 0 NA Intergenic Intergenic 38690 ENSMUSG00000082448.1 ENSMUSG00000082448 ENSMUST00000120443 Gm11676 processed_pseudogene Interval_63531 chr15 101817441 101818567 + 0 NA exon (ENSMUSG00000064201.8, exon 1 of 9) protein_coding-exon (ENSMUSG00000064201.8, exon 1 of 9) 165 ENSMUSG00000064201.8 ENSMUSG00000064201 ENSMUST00000023712 Krt2 protein_coding Interval_134667 chr6 30227991 30228969 + 0 NA intron (ENSMUSG00000039159.16, intron 3 of 4) protein_coding-intron (ENSMUSG00000039159.16, intron 3 of 4) 55587 ENSMUSG00000103108.2 ENSMUSG00000103108 ENSMUST00000194541 Rncr4 lincRNA Interval_87377 chr19 48058861 48059072 + 0 NA Intergenic Intergenic -58382 ENSMUSG00000117690.1 ENSMUSG00000117690 ENSMUST00000237618 Gm50430 lincRNA Interval_80943 chr18 50811660 50812440 + 0 NA Intergenic Intergenic -191054 ENSMUSG00000118088.1 ENSMUSG00000118088 ENSMUST00000236182 Gm3815 processed_pseudogene Interval_100785 chr2 172516194 172517212 + 0 NA Intergenic Intergenic -7012 ENSMUSG00000081344.5 ENSMUSG00000081344 ENSMUST00000121320 Gm14303 processed_pseudogene Interval_103479 chr3 43361600 43361819 + 0 NA Intergenic Intergenic 30228 ENSMUSG00000102334.1 ENSMUSG00000102334 ENSMUST00000193011 Gm18865 processed_pseudogene Interval_156112 chr8 44899260 44899616 + 0 NA Intergenic Intergenic 35721 ENSMUSG00000110409.1 ENSMUSG00000110409 ENSMUST00000211534 Gm9908 bidirectional_promoter_lncRNA Interval_7969 chr1 134936132 134936456 + 0 NA intron (ENSMUSG00000073557.12, intron 1 of 24) protein_coding-intron (ENSMUSG00000073557.12, intron 1 of 23) -26324 ENSMUSG00000026429.9 ENSMUSG00000026429 ENSMUST00000139617 Ube2t protein_coding Interval_96783 chr2 128192135 128192634 + 0 NA intron (ENSMUSG00000085750.1, intron 1 of 3) lincRNA-intron (ENSMUSG00000074813.14, intron 4 of 4) 2397 ENSMUSG00000085750.1 ENSMUSG00000085750 ENSMUST00000152439 Gm14009 lincRNA Interval_156754 chr8 57931161 57931539 + 0 NA intron (ENSMUSG00000096914.3, intron 7 of 12) protein_coding-intron (ENSMUSG00000096914.3, intron 2 of 7) 39607 ENSMUSG00000109753.1 ENSMUSG00000109753 ENSMUST00000210669 Gm45633 TEC Interval_44676 chr13 47080858 47081539 + 0 NA intron (ENSMUSG00000038080.17, intron 10 of 10) protein_coding-intron (ENSMUSG00000038080.17, intron 20 of 20) 17139 ENSMUSG00000021377.15 ENSMUSG00000021377 ENSMUST00000150652 Dek protein_coding Interval_81252 chr18 56757281 56757861 + 0 NA Intergenic Intergenic -12146 ENSMUSG00000087597.1 ENSMUSG00000087597 ENSMUST00000128240 Gm15345 antisense Interval_136848 chr6 61339591 61339831 + 0 NA intron (ENSMUSG00000039578.17, intron 1 of 3) protein_coding-intron (ENSMUSG00000039578.17, intron 2 of 9) -60896 ENSMUSG00000107757.1 ENSMUSG00000107757 ENSMUST00000204456 Gm43898 processed_pseudogene Interval_14290 chr10 30519427 30519937 + 0 NA Intergenic Intergenic -5559 ENSMUSG00000111397.1 ENSMUSG00000111397 ENSMUST00000214959 Gm48232 TEC Interval_4727 chr1 77840639 77841171 + 0 NA Intergenic Intergenic 57541 ENSMUSG00000065215.1 ENSMUSG00000065215 ENSMUST00000083281 Gm26263 snRNA Interval_16474 chr10 63061466 63062027 + 0 NA TTS (ENSMUSG00000112129.1) protein_coding-TTS (ENSMUSG00000112129.1) -4279 ENSMUSG00000087030.1 ENSMUSG00000087030 ENSMUST00000155982 Gm16143 antisense Interval_166130 chr9 56900799 56901523 + 0 NA Intergenic Intergenic -2300 ENSMUSG00000110888.1 ENSMUSG00000110888 ENSMUST00000213195 Gm47237 lincRNA Interval_158695 chr8 85350093 85350352 + 0 NA intron (ENSMUSG00000031698.14, intron 8 of 12) protein_coding-intron (ENSMUSG00000031698.14, intron 8 of 12) 10879 ENSMUSG00000084895.1 ENSMUSG00000084895 ENSMUST00000151550 AA672651 antisense Interval_148640 chr7 83695466 83696062 + 0 NA intron (ENSMUSG00000001741.12, intron 2 of 12) protein_coding-intron (ENSMUSG00000001741.12, intron 2 of 18) 15955 ENSMUSG00000109290.1 ENSMUSG00000109290 ENSMUST00000207540 Phgdh-ps1 processed_pseudogene Interval_45392 chr13 54834828 54835292 + 0 NA Intergenic Intergenic 5844 ENSMUSG00000086097.1 ENSMUSG00000086097 ENSMUST00000148974 Gm16250 processed_pseudogene Interval_43353 chr13 29602634 29602987 + 0 NA intron (ENSMUSG00000006191.17, intron 9 of 10) protein_coding-intron (ENSMUSG00000006191.17, intron 9 of 15) -85356 ENSMUSG00000006191.17 ENSMUSG00000006191 ENSMUST00000129231 Cdkal1 protein_coding Interval_57749 chr15 18314351 18314597 + 0 NA intron (ENSMUSG00000098150.2, intron 6 of 11) processed_transcript-intron (ENSMUSG00000098150.2, intron 4 of 8) 53764 ENSMUSG00000098150.2 ENSMUSG00000098150 ENSMUST00000228926 4921515E04Rik processed_transcript Interval_94905 chr2 101570606 101570788 + 0 NA promoter-TSS (ENSMUSG00000093614.1) processed_pseudogene-promoter-TSS (ENSMUSG00000093614.1) 73 ENSMUSG00000093614.1 ENSMUSG00000093614 ENSMUST00000177431 Gm20693 processed_pseudogene Interval_25324 chr11 46365319 46365666 + 0 NA intron (ENSMUSG00000020395.13, intron 3 of 3) protein_coding-intron (ENSMUSG00000020395.13, intron 3 of 16) 23205 ENSMUSG00000085853.1 ENSMUSG00000085853 ENSMUST00000148132 Gm12167 antisense Interval_95561 chr2 112276622 112277108 + 0 NA intron (ENSMUSG00000096764.1, intron 1 of 27) protein_coding-intron (ENSMUSG00000027130.15, intron 1 of 24) 10551 ENSMUSG00000096764.1 ENSMUSG00000096764 ENSMUST00000141047 Gm21985 protein_coding Interval_122128 chr5 17746864 17747158 + 0 NA Intergenic Intergenic 88706 ENSMUSG00000002944.15 ENSMUSG00000002944 ENSMUST00000197574 Cd36 protein_coding Interval_116826 chr4 117506267 117507219 + 0 NA Intergenic Intergenic 7458 ENSMUSG00000083446.1 ENSMUSG00000083446 ENSMUST00000121841 Gm12826 processed_pseudogene Interval_160961 chr8 116438694 116439577 + 0 NA Intergenic Intergenic -50051 ENSMUSG00000110700.1 ENSMUSG00000110700 ENSMUST00000212720 Gm5357 processed_pseudogene Interval_118530 chr4 132313729 132314462 + 0 NA TTS (ENSMUSG00000028898.15) protein_coding-TTS (ENSMUSG00000028898.15) 3404 ENSMUSG00000080615.1 ENSMUSG00000080615 ENSMUST00000116965 Snord99 snoRNA Interval_57946 chr15 25688513 25688766 + 0 NA intron (ENSMUSG00000022272.17, intron 1 of 4) protein_coding-intron (ENSMUSG00000022272.17, intron 2 of 40) 6841 ENSMUSG00000089639.1 ENSMUSG00000089639 ENSMUST00000161524 Gm2862 processed_pseudogene Interval_20134 chr10 115184640 115185304 + 0 NA promoter-TSS (ENSMUSG00000006764.8) protein_coding-promoter-TSS (ENSMUSG00000006764.8) -9414 ENSMUSG00000006764.8 ENSMUSG00000006764 ENSMUST00000155794 Tph2 protein_coding Interval_87215 chr19 46975145 46975421 + 0 NA intron (ENSMUSG00000025041.17, intron 1 of 17) protein_coding-intron (ENSMUSG00000025041.17, intron 1 of 17) -12975 ENSMUSG00000025041.17 ENSMUSG00000025041 ENSMUST00000237658 Nt5c2 protein_coding Interval_16464 chr10 63010498 63011826 + 0 NA intron (ENSMUSG00000020070.18, intron 16 of 18) protein_coding-intron (ENSMUSG00000020070.18, intron 16 of 17) 6922 ENSMUSG00000020069.16 ENSMUSG00000020069 ENSMUST00000119814 Hnrnph3 protein_coding Interval_118503 chr4 132143632 132145017 + 0 NA exon (ENSMUSG00000050511.1, exon 1 of 3) protein_coding-exon (ENSMUSG00000050511.1, exon 1 of 3) 162 ENSMUSG00000050511.1 ENSMUSG00000050511 ENSMUST00000056336 Oprd1 protein_coding Interval_172840 chrX 51677054 51677441 + 0 NA exon (ENSMUSG00000062184.11, exon 2 of 2) protein_coding-exon (ENSMUSG00000062184.11, exon 2 of 2) 3318 ENSMUSG00000062184.11 ENSMUSG00000062184 ENSMUST00000140145 Hs6st2 protein_coding Interval_78673 chr18 16713219 16714195 + 0 NA intron (ENSMUSG00000024304.14, intron 2 of 15) protein_coding-intron (ENSMUSG00000024304.14, intron 2 of 15) -15026 ENSMUSG00000085575.1 ENSMUSG00000085575 ENSMUST00000149095 Gm15485 antisense Interval_38344 chr12 77575331 77575829 + 0 NA Intergenic Intergenic -1514 ENSMUSG00000111896.1 ENSMUSG00000111896 ENSMUST00000218689 Gm48196 processed_pseudogene Interval_171019 chr9 113771464 113771814 + 0 NA intron (ENSMUSG00000033392.16, intron 4 of 10) protein_coding-intron (ENSMUSG00000033392.16, intron 4 of 15) 4659 ENSMUSG00000087992.1 ENSMUSG00000087992 ENSMUST00000157367 Gm25059 snoRNA Interval_171237 chr9 115523490 115524291 + 0 NA Intergenic Intergenic -85309 ENSMUSG00000074034.1 ENSMUSG00000074034 ENSMUST00000075898 Gm5921 processed_pseudogene Interval_101741 chr3 9323426 9323706 + 0 NA Intergenic Intergenic 72964 ENSMUSG00000069114.8 ENSMUSG00000069114 ENSMUST00000155203 Zbtb10 protein_coding Interval_76667 chr17 83322616 83324358 + 0 NA Intergenic Intergenic 34941 ENSMUSG00000094256.2 ENSMUSG00000094256 ENSMUST00000077420 Rpl21-ps7 processed_pseudogene Interval_52749 chr14 49348783 49349554 + 0 NA intron (ENSMUSG00000021852.14, intron 1 of 2) protein_coding-intron (ENSMUSG00000021852.14, intron 1 of 7) 49332 ENSMUSG00000115096.1 ENSMUSG00000115096 ENSMUST00000228016 Gm48940 antisense Interval_86318 chr19 38681832 38682690 + 0 NA intron (ENSMUSG00000024998.17, intron 4 of 32) protein_coding-intron (ENSMUSG00000024998.17, intron 3 of 31) 22063 ENSMUSG00000117935.1 ENSMUSG00000117935 ENSMUST00000237606 Gm8717 processed_pseudogene Interval_83547 chr18 89117808 89118816 + 0 NA intron (ENSMUSG00000023066.10, intron 16 of 19) protein_coding-intron (ENSMUSG00000023066.10, intron 45 of 48) 16684 ENSMUSG00000023066.10 ENSMUSG00000023066 ENSMUST00000237196 Rttn protein_coding Interval_66201 chr16 32291494 32292703 + 0 NA intron (ENSMUSG00000014074.17, intron 5 of 5) protein_coding-intron (ENSMUSG00000014074.17, intron 5 of 5) 14637 ENSMUSG00000014074.17 ENSMUSG00000014074 ENSMUST00000171474 Rnf168 protein_coding Interval_109347 chr3 139452957 139453148 + 0 NA intron (ENSMUSG00000047940.13, intron 11 of 13) protein_coding-intron (ENSMUSG00000047940.13, intron 11 of 13) -35189 ENSMUSG00000065675.1 ENSMUSG00000065675 ENSMUST00000083741 Gm24260 snRNA Interval_164298 chr9 35123518 35123997 + 0 NA TTS (ENSMUSG00000032040.15) protein_coding-TTS (ENSMUSG00000032040.15) 7003 ENSMUSG00000070315.12 ENSMUSG00000070315 ENSMUST00000161136 4930581F22Rik processed_transcript Interval_46430 chr13 65200209 65200523 + 0 NA intron (ENSMUSG00000032999.10, intron 1 of 2) protein_coding-intron (ENSMUSG00000032999.10, intron 1 of 9) 5577 ENSMUSG00000032999.10 ENSMUSG00000032999 ENSMUST00000222273 Nlrp4f protein_coding Interval_124210 chr5 41044216 41044797 + 0 NA Intergenic Intergenic -236730 ENSMUSG00000106865.1 ENSMUSG00000106865 ENSMUST00000200907 4930519E07Rik TEC Interval_30629 chr11 95569280 95569602 + 0 NA exon (ENSMUSG00000000120.6, exon 6 of 6) protein_coding-exon (ENSMUSG00000000120.6, exon 6 of 6) 18294 ENSMUSG00000000120.6 ENSMUSG00000000120 ENSMUST00000000122 Ngfr protein_coding Interval_163019 chr9 14575137 14575842 + 0 NA intron (ENSMUSG00000013076.17, intron 4 of 13) protein_coding-intron (ENSMUSG00000013076.17, intron 3 of 12) 44076 ENSMUSG00000111540.1 ENSMUSG00000111540 ENSMUST00000216646 4930584E12Rik TEC Interval_67030 chr16 41574690 41575897 + 0 NA intron (ENSMUSG00000061080.11, intron 3 of 8) protein_coding-intron (ENSMUSG00000061080.11, intron 1 of 5) -144201 ENSMUSG00000101463.1 ENSMUSG00000101463 ENSMUST00000186327 Gm28750 antisense Interval_71630 chr17 24982308 24982794 + 0 NA exon (ENSMUSG00000038002.9, exon 10 of 21) protein_coding-exon (ENSMUSG00000038002.9, exon 10 of 21) -21906 ENSMUSG00000024165.9 ENSMUSG00000024165 ENSMUST00000233481 Jpt2 protein_coding Interval_92056 chr2 52913417 52914317 + 0 NA intron (ENSMUSG00000036053.17, intron 1 of 26) protein_coding-intron (ENSMUSG00000036053.17, intron 1 of 26) 56007 ENSMUSG00000036053.17 ENSMUSG00000036053 ENSMUST00000050719 Fmnl2 protein_coding Interval_156078 chr8 43615602 43616493 + 0 NA Intergenic Intergenic 11229 ENSMUSG00000050190.4 ENSMUSG00000050190 ENSMUST00000056023 Adam34l protein_coding Interval_96517 chr2 125239659 125240539 + 0 NA Intergenic Intergenic -7801 ENSMUSG00000027203.15 ENSMUSG00000027203 ENSMUST00000133211 Dut protein_coding Interval_27956 chr11 71442557 71443320 + 0 NA Intergenic Intergenic -6758 ENSMUSG00000085230.1 ENSMUSG00000085230 ENSMUST00000152249 Gm16013 lincRNA Interval_96987 chr2 130283559 130284574 + 0 NA exon (ENSMUSG00000027406.13, exon 2 of 2) protein_coding-exon (ENSMUSG00000027406.13, exon 2 of 2) 395 ENSMUSG00000027406.13 ENSMUSG00000027406 ENSMUST00000124868 Idh3b protein_coding Interval_125065 chr5 64218068 64218397 + 0 NA intron (ENSMUSG00000029174.18, intron 3 of 20) protein_coding-intron (ENSMUSG00000029174.18, intron 2 of 21) -15698 ENSMUSG00000104947.1 ENSMUSG00000104947 ENSMUST00000199677 Gm43721 TEC Interval_641 chr1 9407970 9408205 + 0 NA Intergenic Intergenic -9400 ENSMUSG00000101571.2 ENSMUSG00000101571 ENSMUST00000040649 Gm6187 processed_pseudogene Interval_60709 chr15 76290659 76291045 + 0 NA TTS (ENSMUSG00000093169.1) miRNA-TTS (ENSMUSG00000093169.1) 116 ENSMUSG00000093169.1 ENSMUSG00000093169 ENSMUST00000175428 Mir3079 miRNA Interval_124028 chr5 37386624 37387328 + 0 NA exon (ENSMUSG00000050248.11, exon 12 of 20) protein_coding-exon (ENSMUSG00000050248.11, exon 12 of 20) -2928 ENSMUSG00000050248.11 ENSMUSG00000050248 ENSMUST00000159854 Evc2 protein_coding Interval_64507 chr16 12873216 12873465 + 0 NA intron (ENSMUSG00000116520.1, intron 1 of 11) lincRNA-intron (ENSMUSG00000116520.1, intron 1 of 11) 72595 ENSMUSG00000116520.1 ENSMUSG00000116520 ENSMUST00000230696 4930414F18Rik lincRNA Interval_101676 chr3 8860779 8860987 + 0 NA intron (ENSMUSG00000040269.5, intron 2 of 2) protein_coding-intron (ENSMUSG00000040269.5, intron 2 of 2) -20316 ENSMUSG00000081594.1 ENSMUSG00000081594 ENSMUST00000120582 Gm15467 processed_pseudogene Interval_163455 chr9 21525851 21526078 + 0 NA promoter-TSS (ENSMUSG00000057191.13) protein_coding-promoter-TSS (ENSMUSG00000057191.13) -237 ENSMUSG00000057191.13 ENSMUSG00000057191 ENSMUST00000076326 AB124611 protein_coding Interval_113907 chr4 59778288 59778515 + 0 NA intron (ENSMUSG00000038544.14, intron 2 of 4) protein_coding-intron (ENSMUSG00000038544.14, intron 2 of 4) 23188 ENSMUSG00000038544.14 ENSMUSG00000038544 ENSMUST00000138097 Inip protein_coding Interval_161389 chr8 120178903 120179403 + 0 NA intron (ENSMUSG00000092329.1, intron 1 of 15) protein_coding-intron (ENSMUSG00000092329.1, intron 1 of 15) -1790 ENSMUSG00000042269.15 ENSMUSG00000042269 ENSMUST00000142478 Fam92b protein_coding Interval_9507 chr1 158214900 158216561 + 0 NA Intergenic Intergenic 140499 ENSMUSG00000004031.13 ENSMUSG00000004031 ENSMUST00000192709 Brinp2 protein_coding Interval_2558 chr1 40330167 40330348 + 0 NA TTS (ENSMUSG00000070942.8) protein_coding-TTS (ENSMUSG00000070942.8) 5567 ENSMUSG00000070942.8 ENSMUSG00000070942 ENSMUST00000193388 Il1rl2 protein_coding Interval_45614 chr13 56266124 56267108 + 0 NA Intergenic Intergenic -14453 ENSMUSG00000048904.5 ENSMUSG00000048904 ENSMUST00000058475 Neurog1 protein_coding Interval_93533 chr2 73891884 73893620 + 0 NA promoter-TSS (ENSMUSG00000027104.18) protein_coding-promoter-TSS (ENSMUSG00000027104.18) 18539 ENSMUSG00000018770.9 ENSMUSG00000018770 ENSMUST00000155474 Atp5g3 protein_coding Interval_121561 chr5 3453690 3454698 + 0 NA intron (ENSMUSG00000040274.11, intron 4 of 7) protein_coding-intron (ENSMUSG00000040274.11, intron 3 of 6) -16755 ENSMUSG00000040274.11 ENSMUSG00000040274 ENSMUST00000199396 Cdk6 protein_coding Interval_129140 chr5 117693507 117693732 + 0 NA intron (ENSMUSG00000061578.8, intron 10 of 20) protein_coding-intron (ENSMUSG00000061578.8, intron 10 of 20) 172920 ENSMUSG00000107199.1 ENSMUSG00000107199 ENSMUST00000201553 Gm42550 TEC Interval_24717 chr11 36145248 36145511 + 0 NA intron (ENSMUSG00000049336.16, intron 8 of 8) protein_coding-intron (ENSMUSG00000049336.16, intron 10 of 28) 64715 ENSMUSG00000087245.1 ENSMUSG00000087245 ENSMUST00000147717 Gm12126 antisense Interval_109506 chr3 143128880 143129092 + 0 NA intron (ENSMUSG00000106052.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000106052.1, intron 1 of 1) 21038 ENSMUSG00000106052.1 ENSMUSG00000106052 ENSMUST00000197030 Gm43614 lincRNA Interval_95431 chr2 109280420 109281505 + 0 NA promoter-TSS (ENSMUSG00000057234.9) protein_coding-promoter-TSS (ENSMUSG00000057234.9) -214 ENSMUSG00000057234.9 ENSMUSG00000057234 ENSMUST00000145535 Mettl15 protein_coding Interval_101673 chr3 8850791 8851891 + 0 NA intron (ENSMUSG00000040269.5, intron 2 of 2) protein_coding-intron (ENSMUSG00000040269.5, intron 2 of 2) -29858 ENSMUSG00000081594.1 ENSMUSG00000081594 ENSMUST00000120582 Gm15467 processed_pseudogene Interval_102835 chr3 31941425 31941646 + 0 NA intron (ENSMUSG00000037610.15, intron 2 of 6) protein_coding-intron (ENSMUSG00000037610.15, intron 1 of 4) -13229 ENSMUSG00000103539.1 ENSMUSG00000103539 ENSMUST00000194517 Gm37834 TEC Interval_39963 chr12 100128826 100129382 + 0 NA intron (ENSMUSG00000021179.8, intron 1 of 1) protein_coding-intron (ENSMUSG00000021179.8, intron 12 of 13) 668 ENSMUSG00000021179.8 ENSMUSG00000021179 ENSMUST00000221954 Nrde2 protein_coding Interval_150573 chr7 112548932 112549989 + 0 NA exon (ENSMUSG00000030770.15, exon 5 of 5) protein_coding-exon (ENSMUSG00000030770.15, exon 5 of 5) -13777 ENSMUSG00000085049.1 ENSMUSG00000085049 ENSMUST00000154848 Parvaos antisense Interval_8227 chr1 136604163 136604408 + 0 NA intron (ENSMUSG00000104366.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000104366.1, intron 1 of 1) 1183 ENSMUSG00000104366.1 ENSMUSG00000104366 ENSMUST00000193674 4933409D19Rik lincRNA Interval_84617 chr19 14469134 14469474 + 0 NA intron (ENSMUSG00000024642.17, intron 8 of 19) protein_coding-intron (ENSMUSG00000024642.17, intron 8 of 19) 126235 ENSMUSG00000024642.17 ENSMUSG00000024642 ENSMUST00000235975 Tle4 protein_coding Interval_34911 chr12 13285239 13285691 + 0 NA intron (ENSMUSG00000020576.10, intron 7 of 51) protein_coding-intron (ENSMUSG00000020576.10, intron 7 of 51) -36302 ENSMUSG00000037149.10 ENSMUSG00000037149 ENSMUST00000221623 Ddx1 protein_coding Interval_7207 chr1 127802497 127803784 + 0 NA exon (ENSMUSG00000026349.14, exon 9 of 9) protein_coding-exon (ENSMUSG00000026349.14, exon 9 of 9) 6569 ENSMUSG00000026349.14 ENSMUSG00000026349 ENSMUST00000153359 Ccnt2 protein_coding Interval_119958 chr4 141113570 141115973 + 0 NA promoter-TSS (ENSMUSG00000097620.7) antisense-promoter-TSS (ENSMUSG00000097620.7) -889 ENSMUSG00000097620.7 ENSMUSG00000097620 ENSMUST00000181450 4921514A10Rik antisense Interval_17658 chr10 78585322 78586609 + 0 NA intron (ENSMUSG00000032714.6, intron 7 of 7) protein_coding-intron (ENSMUSG00000032714.6, intron 7 of 7) -5748 ENSMUSG00000112021.1 ENSMUSG00000112021 ENSMUST00000218641 Gm30346 TEC Interval_38821 chr12 82818590 82819789 + 0 NA intron (ENSMUSG00000021219.16, intron 2 of 16) protein_coding-intron (ENSMUSG00000021219.16, intron 1 of 14) -46733 ENSMUSG00000104848.1 ENSMUSG00000104848 ENSMUST00000196259 Gm22149 snoRNA Interval_63374 chr15 100669192 100669651 + 0 NA promoter-TSS (ENSMUSG00000098112.8) protein_coding-promoter-TSS (ENSMUSG00000098112.8) 84 ENSMUSG00000098112.8 ENSMUSG00000098112 ENSMUST00000183193 Bin2 protein_coding Interval_149551 chr7 99510141 99510549 + 0 NA Intergenic Intergenic 12627 ENSMUSG00000065311.1 ENSMUSG00000065311 ENSMUST00000083377 n-R5s156 rRNA Interval_84918 chr19 18741755 18742852 + 0 NA Intergenic Intergenic -9527 ENSMUSG00000117878.1 ENSMUSG00000117878 ENSMUST00000237961 Gm50202 lincRNA Interval_23611 chr11 23777625 23778087 + 0 NA promoter-TSS (ENSMUSG00000087741.1) snRNA-promoter-TSS (ENSMUSG00000087741.1) -809 ENSMUSG00000087741.1 ENSMUSG00000087741 ENSMUST00000157116 Gm23827 snRNA Interval_40348 chr12 104064552 104064889 + 0 NA Intergenic Intergenic -15929 ENSMUSG00000092075.1 ENSMUSG00000092075 ENSMUST00000166601 Serpina4-ps1 unprocessed_pseudogene Interval_163581 chr9 22337026 22337369 + 0 NA intron (ENSMUSG00000036777.8, intron 3 of 3) protein_coding-intron (ENSMUSG00000036777.8, intron 22 of 23) -6697 ENSMUSG00000110759.1 ENSMUSG00000110759 ENSMUST00000215035 Gm6607 processed_pseudogene Interval_124882 chr5 58870034 58870218 + 0 NA Intergenic Intergenic 130867 ENSMUSG00000106509.1 ENSMUSG00000106509 ENSMUST00000198671 Gm43394 processed_pseudogene Interval_79157 chr18 25116185 25116518 + 0 NA intron (ENSMUSG00000034295.10, intron 21 of 24) protein_coding-intron (ENSMUSG00000034295.10, intron 23 of 26) 52343 ENSMUSG00000024269.11 ENSMUSG00000024269 ENSMUST00000115817 Tpgs2 protein_coding Interval_28038 chr11 72400997 72403202 + 0 NA intron (ENSMUSG00000045667.14, intron 1 of 1) protein_coding-intron (ENSMUSG00000045667.14, intron 4 of 7) 642 ENSMUSG00000045667.14 ENSMUSG00000045667 ENSMUST00000143345 Smtnl2 protein_coding Interval_8867 chr1 151660553 151661099 + 0 NA intron (ENSMUSG00000026483.13, intron 5 of 13) protein_coding-intron (ENSMUSG00000026483.13, intron 5 of 14) 89453 ENSMUSG00000026483.13 ENSMUSG00000026483 ENSMUST00000086267 Fam129a protein_coding Interval_154878 chr8 24571007 24571537 + 0 NA intron (ENSMUSG00000031549.16, intron 1 of 9) protein_coding-intron (ENSMUSG00000031549.16, intron 1 of 9) -16675 ENSMUSG00000031549.16 ENSMUSG00000031549 ENSMUST00000138155 Ido2 protein_coding Interval_70795 chr17 14649410 14649608 + 0 NA Intergenic Intergenic 21357 ENSMUSG00000023885.9 ENSMUSG00000023885 ENSMUST00000232616 Thbs2 protein_coding Interval_11741 chr1 185079272 185080676 + 0 NA Intergenic Intergenic 5990 ENSMUSG00000103942.1 ENSMUSG00000103942 ENSMUST00000195441 Gm34732 lincRNA Interval_44441 chr13 44859788 44860661 + 0 NA intron (ENSMUSG00000038518.15, intron 3 of 5) protein_coding-intron (ENSMUSG00000038518.15, intron 4 of 18) -21941 ENSMUSG00000088189.1 ENSMUSG00000088189 ENSMUST00000157564 Gm22213 snoRNA Interval_127209 chr5 101336113 101337147 + 0 NA Intergenic Intergenic 31052 ENSMUSG00000105965.1 ENSMUSG00000105965 ENSMUST00000197114 Cycs-ps2 processed_pseudogene Interval_27437 chr11 67682232 67682497 + 0 NA exon (ENSMUSG00000033066.16, exon 1 of 2) protein_coding-exon (ENSMUSG00000033066.16, exon 1 of 2) -12962 ENSMUSG00000020907.1 ENSMUSG00000020907 ENSMUST00000021290 Rcvrn protein_coding Interval_106894 chr3 101648175 101648684 + 0 NA Intergenic Intergenic -43360 ENSMUSG00000106070.1 ENSMUSG00000106070 ENSMUST00000196442 Gm43135 lincRNA Interval_119844 chr4 140439639 140440677 + 0 NA intron (ENSMUSG00000085047.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000085047.1, intron 1 of 1) 2195 ENSMUSG00000085047.1 ENSMUSG00000085047 ENSMUST00000140113 Gm13026 lincRNA Interval_84535 chr19 12466121 12466616 + 0 NA TTS (ENSMUSG00000039982.8) protein_coding-TTS (ENSMUSG00000039982.8) 5589 ENSMUSG00000046805.10 ENSMUSG00000046805 ENSMUST00000081035 Mpeg1 protein_coding Interval_115313 chr4 95924219 95925043 + 0 NA intron (ENSMUSG00000028573.18, intron 4 of 4) protein_coding-intron (ENSMUSG00000028573.18, intron 15 of 15) 42404 ENSMUSG00000044125.6 ENSMUSG00000044125 ENSMUST00000143332 9530080O11Rik processed_transcript Interval_52133 chr14 36957727 36958042 + 0 NA intron (ENSMUSG00000058690.14, intron 1 of 10) protein_coding-intron (ENSMUSG00000058690.14, intron 1 of 9) -48703 ENSMUSG00000058690.14 ENSMUSG00000058690 ENSMUST00000182635 Ccser2 protein_coding Interval_147079 chr7 62026266 62027274 + 0 NA Intergenic Intergenic 9967 ENSMUSG00000077194.1 ENSMUSG00000077194 ENSMUST00000104006 Gm23431 snRNA Interval_84392 chr19 10576803 10578022 + 0 NA promoter-TSS (ENSMUSG00000024666.6) protein_coding-promoter-TSS (ENSMUSG00000024666.6) 240 ENSMUSG00000034445.8 ENSMUSG00000034445 ENSMUST00000236747 Cyb561a3 protein_coding Interval_118725 chr4 133391206 133392023 + 0 NA intron (ENSMUSG00000028854.9, intron 1 of 11) protein_coding-intron (ENSMUSG00000028854.9, intron 1 of 11) 21838 ENSMUSG00000092745.1 ENSMUSG00000092745 ENSMUST00000175004 Mir5122 miRNA Interval_104793 chr3 73441867 73442494 + 0 NA intron (ENSMUSG00000102362.1, intron 2 of 7) lincRNA-intron (ENSMUSG00000102820.1, intron 4 of 4) 39471 ENSMUSG00000102362.1 ENSMUSG00000102362 ENSMUST00000194514 4930509J09Rik lincRNA Interval_67066 chr16 42478667 42478838 + 0 NA Intergenic Intergenic -175283 ENSMUSG00000098300.1 ENSMUSG00000098300 ENSMUST00000184886 Mir6540 miRNA Interval_54726 chr14 73608048 73609630 + 0 NA Intergenic Intergenic -52386 ENSMUSG00000096463.1 ENSMUSG00000096463 ENSMUST00000098874 Gm21750 protein_coding Interval_160578 chr8 110817190 110818114 + 0 NA exon (ENSMUSG00000033732.10, exon 18 of 26) protein_coding-exon (ENSMUSG00000033732.10, exon 18 of 26) 12014 ENSMUSG00000085068.1 ENSMUSG00000085068 ENSMUST00000157018 Gm15895 antisense Interval_171054 chr9 114018360 114018632 + 0 NA intron (ENSMUSG00000032507.15, intron 1 of 3) protein_coding-intron (ENSMUSG00000032507.15, intron 1 of 14) 8230 ENSMUSG00000032507.15 ENSMUSG00000032507 ENSMUST00000141832 Fbxl2 protein_coding Interval_28820 chr11 78522756 78523306 + 0 NA TTS (ENSMUSG00000001100.10) protein_coding-TTS (ENSMUSG00000001100.10) 6212 ENSMUSG00000001100.10 ENSMUSG00000001100 ENSMUST00000151499 Poldip2 protein_coding Interval_38208 chr12 76368979 76371531 + 0 NA promoter-TSS (ENSMUSG00000033454.6) protein_coding-promoter-TSS (ENSMUSG00000033454.6) -11 ENSMUSG00000033454.6 ENSMUSG00000033454 ENSMUST00000042779 Zbtb1 protein_coding Interval_5430 chr1 88737055 88737468 + 0 NA Intergenic Intergenic -14437 ENSMUSG00000101736.1 ENSMUSG00000101736 ENSMUST00000188361 Gm29335 processed_pseudogene Interval_120909 chr4 151493424 151493870 + 0 NA intron (ENSMUSG00000014592.21, intron 5 of 7) protein_coding-intron (ENSMUSG00000014592.21, intron 4 of 23) 117177 ENSMUSG00000085593.1 ENSMUSG00000085593 ENSMUST00000129097 4930589P08Rik antisense Interval_132232 chr5 143496501 143497241 + 0 NA intron (ENSMUSG00000039206.13, intron 11 of 14) protein_coding-intron (ENSMUSG00000039206.13, intron 11 of 14) 21311 ENSMUSG00000001847.14 ENSMUSG00000001847 ENSMUST00000131513 Rac1 protein_coding Interval_154354 chr8 14933754 14934020 + 0 NA intron (ENSMUSG00000071176.10, intron 5 of 15) protein_coding-intron (ENSMUSG00000071176.10, intron 5 of 28) -11414 ENSMUSG00000071176.10 ENSMUSG00000071176 ENSMUST00000162636 Arhgef10 protein_coding Interval_132731 chr5 147442566 147443854 + 0 NA intron (ENSMUSG00000029647.15, intron 1 of 3) protein_coding-intron (ENSMUSG00000029647.15, intron 1 of 18) 3820 ENSMUSG00000107085.1 ENSMUSG00000107085 ENSMUST00000202594 Gm42883 processed_pseudogene Interval_133299 chr5 151353255 151354262 + 0 NA intron (ENSMUSG00000107011.1, intron 1 of 5) protein_coding-intron (ENSMUSG00000107011.1, intron 1 of 5) -46386 ENSMUSG00000097321.5 ENSMUSG00000097321 ENSMUST00000201853 1700028E10Rik processed_transcript Interval_174319 chrX 144361932 144362228 + 0 NA intron (ENSMUSG00000041718.16, intron 23 of 25) protein_coding-intron (ENSMUSG00000041718.16, intron 10 of 13) -40825 ENSMUSG00000080922.1 ENSMUSG00000080922 ENSMUST00000121333 Gm2214 processed_pseudogene Interval_116125 chr4 107968266 107968499 + 0 NA promoter-TSS (ENSMUSG00000008932.10) protein_coding-promoter-TSS (ENSMUSG00000008932.10) 48 ENSMUSG00000008932.10 ENSMUSG00000008932 ENSMUST00000124190 Slc1a7 protein_coding Interval_128119 chr5 111106542 111107335 + 0 NA intron (ENSMUSG00000033209.17, intron 5 of 22) protein_coding-intron (ENSMUSG00000033209.17, intron 5 of 23) -51373 ENSMUSG00000106153.1 ENSMUSG00000106153 ENSMUST00000198098 Gm43677 TEC Interval_38655 chr12 80853744 80854563 + 0 NA intron (ENSMUSG00000021133.9, intron 3 of 6) protein_coding-intron (ENSMUSG00000021133.9, intron 2 of 5) -57324 ENSMUSG00000065115.1 ENSMUSG00000065115 ENSMUST00000083181 Gm23298 snRNA Interval_71731 chr17 25741192 25741829 + 0 NA intron (ENSMUSG00000041062.7, intron 4 of 15) protein_coding-intron (ENSMUSG00000041062.7, intron 4 of 15) 5369 ENSMUSG00000076274.1 ENSMUSG00000076274 ENSMUST00000102319 Gm25083 miRNA Interval_132410 chr5 144767802 144769353 + 0 NA promoter-TSS (ENSMUSG00000045482.16) protein_coding-promoter-TSS (ENSMUSG00000045482.16) -2573 ENSMUSG00000045482.16 ENSMUSG00000045482 ENSMUST00000138589 Trrap protein_coding Interval_139054 chr6 94619965 94621191 + 0 NA intron (ENSMUSG00000030029.14, intron 8 of 19) protein_coding-intron (ENSMUSG00000030029.14, intron 8 of 19) -14163 ENSMUSG00000098531.1 ENSMUSG00000098531 ENSMUST00000183891 Mir7041 miRNA Interval_137982 chr6 83922720 83923700 + 0 NA intron (ENSMUSG00000030016.14, intron 1 of 26) protein_coding-intron (ENSMUSG00000030016.14, intron 1 of 27) -24688 ENSMUSG00000030016.14 ENSMUSG00000030016 ENSMUST00000204823 Zfp638 protein_coding Interval_135621 chr6 41680392 41681710 + 0 NA promoter-TSS (ENSMUSG00000036899.10) protein_coding-promoter-TSS (ENSMUSG00000036899.10) -396 ENSMUSG00000036899.10 ENSMUSG00000036899 ENSMUST00000193503 Trpv5 protein_coding Interval_31054 chr11 97903597 97903972 + 0 NA Intergenic Intergenic 19190 ENSMUSG00000086917.1 ENSMUSG00000086917 ENSMUST00000152825 Gm11630 lincRNA Interval_80153 chr18 37892093 37892308 + 0 NA intron (ENSMUSG00000024456.16, intron 13 of 26) protein_coding-intron (ENSMUSG00000024456.16, intron 14 of 27) 5742 ENSMUSG00000024456.16 ENSMUSG00000024456 ENSMUST00000129688 Diaph1 protein_coding Interval_62857 chr15 97450571 97450867 + 0 NA Intergenic Intergenic 89517 ENSMUSG00000044250.8 ENSMUSG00000044250 ENSMUST00000226495 Pced1b protein_coding Interval_90317 chr2 29747167 29749289 + 0 NA intron (ENSMUSG00000079497.4, intron 1 of 3) protein_coding-intron (ENSMUSG00000079497.4, intron 1 of 3) 3457 ENSMUSG00000079497.4 ENSMUSG00000079497 ENSMUST00000129574 Gm13420 protein_coding Interval_167617 chr9 71177365 71178308 + 0 NA intron (ENSMUSG00000111429.1, intron 2 of 2) antisense-intron (ENSMUSG00000111429.1, intron 2 of 2) 9060 ENSMUSG00000111429.1 ENSMUSG00000111429 ENSMUST00000217021 Gm32511 antisense Interval_74394 chr17 49895614 49896639 + 0 NA promoter-TSS (ENSMUSG00000090227.1) antisense-promoter-TSS (ENSMUSG00000090227.1) -159 ENSMUSG00000090227.1 ENSMUSG00000090227 ENSMUST00000159471 Gm16554 antisense Interval_46856 chr13 72628100 72630136 + 0 NA promoter-TSS (ENSMUSG00000001504.10) protein_coding-promoter-TSS (ENSMUSG00000001504.10) -554 ENSMUSG00000093587.3 ENSMUSG00000093587 ENSMUST00000177421 Gm20554 lincRNA Interval_61535 chr15 82218503 82219902 + 0 NA Intergenic Intergenic 5167 ENSMUSG00000068105.11 ENSMUSG00000068105 ENSMUST00000229984 Tnfrsf13c protein_coding Interval_133826 chr6 12867263 12867577 + 0 NA Intergenic Intergenic 10023 ENSMUSG00000083620.1 ENSMUSG00000083620 ENSMUST00000121833 Gm15529 processed_pseudogene Interval_151642 chr7 125628768 125629083 + 0 NA exon (ENSMUSG00000030745.9, exon 6 of 9) protein_coding-exon (ENSMUSG00000030745.9, exon 6 of 9) 25496 ENSMUSG00000030745.9 ENSMUSG00000030745 ENSMUST00000033000 Il21r protein_coding Interval_120434 chr4 148602925 148605582 + 0 NA intron (ENSMUSG00000028979.17, intron 3 of 6) protein_coding-intron (ENSMUSG00000028979.17, intron 4 of 10) 1685 ENSMUSG00000028979.17 ENSMUSG00000028979 ENSMUST00000136647 Masp2 protein_coding Interval_68323 chr16 73117475 73117732 + 0 NA intron (ENSMUSG00000116976.1, intron 2 of 2) processed_transcript-intron (ENSMUSG00000116976.1, intron 2 of 2) 45228 ENSMUSG00000116976.1 ENSMUSG00000116976 ENSMUST00000231486 4930500H12Rik processed_transcript Interval_143380 chr7 6244427 6245436 + 0 NA Intergenic Intergenic 14752 ENSMUSG00000058028.14 ENSMUSG00000058028 ENSMUST00000165445 Zscan5b protein_coding Interval_90084 chr2 27793125 27793686 + 0 NA Intergenic Intergenic 68186 ENSMUSG00000015846.15 ENSMUSG00000015846 ENSMUST00000148756 Rxra protein_coding Interval_16345 chr10 62370886 62371418 + 0 NA intron (ENSMUSG00000037012.18, intron 1 of 4) protein_coding-intron (ENSMUSG00000037012.18, intron 1 of 21) 30545 ENSMUSG00000085347.1 ENSMUSG00000085347 ENSMUST00000142968 Hk1os antisense Interval_154101 chr8 12698841 12699115 + 0 NA Intergenic Intergenic 20149 ENSMUSG00000074469.6 ENSMUSG00000074469 ENSMUST00000151188 Gm15348 lincRNA Interval_26023 chr11 53525021 53525994 + 0 NA intron (ENSMUSG00000018398.18, intron 1 of 9) protein_coding-intron (ENSMUSG00000018398.18, intron 1 of 9) 5580 ENSMUSG00000018398.18 ENSMUSG00000018398 ENSMUST00000145927 Septin8 protein_coding Interval_93998 chr2 80594480 80594813 + 0 NA Intergenic Intergenic -8087 ENSMUSG00000083284.1 ENSMUSG00000083284 ENSMUST00000121557 Gm13688 processed_pseudogene Interval_14707 chr10 39209196 39210232 + 0 NA Intergenic Intergenic 11176 ENSMUSG00000111877.1 ENSMUSG00000111877 ENSMUST00000217098 Gm6477 processed_pseudogene Interval_36789 chr12 54053979 54054233 + 0 NA intron (ENSMUSG00000021010.9, intron 8 of 10) protein_coding-intron (ENSMUSG00000021010.9, intron 9 of 11) 25286 ENSMUSG00000099407.1 ENSMUSG00000099407 ENSMUST00000185390 1700060O08Rik antisense Interval_75061 chr17 62758854 62759970 + 0 NA intron (ENSMUSG00000048915.12, intron 1 of 3) protein_coding-intron (ENSMUSG00000048915.12, intron 1 of 4) 121732 ENSMUSG00000048915.12 ENSMUSG00000048915 ENSMUST00000078839 Efna5 protein_coding Interval_127761 chr5 107494688 107494986 + 0 NA intron (ENSMUSG00000111375.4, intron 9 of 17) protein_coding-intron (ENSMUSG00000111375.4, intron 9 of 17) -14107 ENSMUSG00000106631.2 ENSMUSG00000106631 ENSMUST00000160160 Gm42669 protein_coding Interval_169675 chr9 100231951 100232464 + 0 NA Intergenic Intergenic -58061 ENSMUSG00000103407.1 ENSMUSG00000103407 ENSMUST00000192569 4930540E01Rik TEC Interval_91849 chr2 50279743 50279982 + 0 NA TTS (ENSMUSG00000026766.16) protein_coding-TTS (ENSMUSG00000026766.16) 16561 ENSMUSG00000026766.16 ENSMUSG00000026766 ENSMUST00000133768 Mmadhc protein_coding Interval_74915 chr17 57264429 57265673 + 0 NA exon (ENSMUSG00000118457.1, exon 4 of 5) unitary_pseudogene-exon (ENSMUSG00000118457.1, exon 4 of 5) 2871 ENSMUSG00000118457.1 ENSMUSG00000118457 ENSMUST00000238696 Gm46575 unitary_pseudogene Interval_34291 chr12 3127024 3128201 + 0 NA Intergenic Intergenic -44262 ENSMUSG00000110250.1 ENSMUSG00000110250 ENSMUST00000210657 Gm9077 unprocessed_pseudogene Interval_154920 chr8 25066451 25067424 + 0 NA intron (ENSMUSG00000031557.16, intron 2 of 4) protein_coding-intron (ENSMUSG00000031557.16, intron 3 of 11) 29009 ENSMUSG00000086289.3 ENSMUSG00000086289 ENSMUST00000211059 Gm16933 lincRNA Interval_114944 chr4 87422171 87422908 + 0 NA Intergenic Intergenic -9733 ENSMUSG00000093065.1 ENSMUSG00000093065 ENSMUST00000175324 Gm23154 miRNA Interval_120356 chr4 148082183 148082829 + 0 NA intron (ENSMUSG00000029007.8, intron 2 of 4) protein_coding-intron (ENSMUSG00000029007.8, intron 2 of 4) 2270 ENSMUSG00000029007.8 ENSMUSG00000029007 ENSMUST00000137393 Agtrap protein_coding Interval_40900 chr12 109326299 109326620 + 0 NA Intergenic Intergenic -5423 ENSMUSG00000093231.1 ENSMUSG00000093231 ENSMUST00000175490 Gm25297 miRNA Interval_4120 chr1 69376543 69378460 + 0 NA exon (ENSMUSG00000101387.1, exon 1 of 1) processed_pseudogene-exon (ENSMUSG00000101387.1, exon 1 of 1) 180 ENSMUSG00000101387.1 ENSMUSG00000101387 ENSMUST00000187740 Pced1c-ps processed_pseudogene Interval_163177 chr9 17120800 17121033 + 0 NA Intergenic Intergenic 90871 ENSMUSG00000090602.3 ENSMUSG00000090602 ENSMUST00000164523 Gm5611 processed_pseudogene Interval_16434 chr10 62851128 62852034 + 0 NA intron (ENSMUSG00000047146.17, intron 3 of 12) protein_coding-intron (ENSMUSG00000047146.17, intron 2 of 10) 8413 ENSMUSG00000112309.1 ENSMUSG00000112309 ENSMUST00000220243 Gm48353 TEC Interval_173222 chrX 74367646 74369063 + 0 NA TTS (ENSMUSG00000032806.13) protein_coding-TTS (ENSMUSG00000032806.13) 2657 ENSMUSG00000032806.13 ENSMUSG00000032806 ENSMUST00000037967 Slc10a3 protein_coding Interval_167742 chr9 72437863 72438982 + 0 NA promoter-TSS (ENSMUSG00000032221.14) protein_coding-promoter-TSS (ENSMUSG00000032221.14) -104 ENSMUSG00000032221.14 ENSMUSG00000032221 ENSMUST00000034746 Mns1 protein_coding Interval_46796 chr13 70621372 70621868 + 0 NA intron (ENSMUSG00000034525.7, intron 3 of 18) protein_coding-intron (ENSMUSG00000034525.7, intron 3 of 18) -25367 ENSMUSG00000034525.7 ENSMUSG00000034525 ENSMUST00000222568 Ice1 protein_coding Interval_8229 chr1 136606008 136606436 + 0 NA promoter-TSS (ENSMUSG00000104366.1) lincRNA-promoter-TSS (ENSMUSG00000104366.1) -754 ENSMUSG00000104366.1 ENSMUSG00000104366 ENSMUST00000193674 4933409D19Rik lincRNA Interval_60775 chr15 76671272 76672146 + 0 NA promoter-TSS (ENSMUSG00000033819.16) protein_coding-promoter-TSS (ENSMUSG00000033819.16) -1907 ENSMUSG00000033837.5 ENSMUSG00000033837 ENSMUST00000230207 Foxh1 protein_coding Interval_139097 chr6 95090708 95090905 + 0 NA Intergenic Intergenic 9501 ENSMUSG00000093999.1 ENSMUSG00000093999 ENSMUST00000178307 Gm26501 snRNA Interval_56187 chr14 111536187 111536806 + 0 NA Intergenic Intergenic -7705 ENSMUSG00000115818.1 ENSMUSG00000115818 ENSMUST00000227161 Gm18580 processed_pseudogene Interval_41544 chr12 116170897 116171305 + 0 NA Intergenic Intergenic -2212 ENSMUSG00000065685.1 ENSMUSG00000065685 ENSMUST00000083751 Gm23732 snRNA Interval_137694 chr6 79825868 79826093 + 0 NA Intergenic Intergenic 8064 ENSMUSG00000096887.2 ENSMUSG00000096887 ENSMUST00000179797 Gm20594 protein_coding Interval_132159 chr5 143003008 143003313 + 0 NA intron (ENSMUSG00000045078.12, intron 15 of 16) protein_coding-intron (ENSMUSG00000045078.12, intron 15 of 16) 42784 ENSMUSG00000029581.14 ENSMUSG00000029581 ENSMUST00000135293 Fscn1 protein_coding Interval_162449 chr8 128875053 128876448 + 0 NA intron (ENSMUSG00000025808.17, intron 35 of 55) protein_coding-intron (ENSMUSG00000025808.17, intron 35 of 55) -76584 ENSMUSG00000025808.17 ENSMUSG00000025808 ENSMUST00000108747 Ccdc7a protein_coding Interval_124068 chr5 38002130 38002815 + 0 NA Intergenic Intergenic 18779 ENSMUSG00000107126.1 ENSMUSG00000107126 ENSMUST00000201470 Gm40289 lincRNA Interval_100872 chr2 173045048 173045469 + 0 NA Intergenic Intergenic -10678 ENSMUSG00000087442.1 ENSMUSG00000087442 ENSMUST00000139677 Gm14453 antisense Interval_173350 chrX 82896261 82896915 + 0 NA TTS (ENSMUSG00000088097.1) misc_RNA-TTS (ENSMUSG00000088097.1) 911 ENSMUSG00000088097.1 ENSMUSG00000088097 ENSMUST00000157472 Gm23671 misc_RNA Interval_156190 chr8 45817124 45817459 + 0 NA intron (ENSMUSG00000031626.18, intron 2 of 4) protein_coding-intron (ENSMUSG00000031626.18, intron 23 of 25) 2006 ENSMUSG00000085440.1 ENSMUSG00000085440 ENSMUST00000135116 Sorbs2os antisense Interval_59834 chr15 59613842 59614229 + 0 NA Intergenic Intergenic -4555 ENSMUSG00000115896.1 ENSMUSG00000115896 ENSMUST00000229684 Gm36677 lincRNA Interval_63227 chr15 99826117 99827085 + 0 NA intron (ENSMUSG00000023022.14, intron 3 of 3) protein_coding-intron (ENSMUSG00000023022.14, intron 3 of 10) 7581 ENSMUSG00000090500.1 ENSMUSG00000090500 ENSMUST00000169887 Gm17057 antisense Interval_72827 chr17 32425237 32425455 + 0 NA Intergenic Intergenic -4371 ENSMUSG00000079563.10 ENSMUSG00000079563 ENSMUST00000236703 Pglyrp2 protein_coding Interval_59700 chr15 58718146 58718959 + 0 NA Intergenic Intergenic 63399 ENSMUSG00000093677.1 ENSMUSG00000093677 ENSMUST00000176387 Gm20712 sense_overlapping Interval_12959 chr10 8744038 8744707 + 0 NA TTS (ENSMUSG00000015305.6) protein_coding-TTS (ENSMUSG00000015305.6) 31131 ENSMUSG00000111215.1 ENSMUSG00000111215 ENSMUST00000213934 Gm48654 lincRNA Interval_100498 chr2 169663215 169663507 + 0 NA intron (ENSMUSG00000047907.11, intron 1 of 2) protein_coding-intron (ENSMUSG00000047907.11, intron 1 of 1) -35043 ENSMUSG00000103662.1 ENSMUSG00000103662 ENSMUST00000191912 Gm34294 TEC Interval_81282 chr18 57364932 57365434 + 0 NA intron (ENSMUSG00000024594.9, intron 4 of 4) protein_coding-intron (ENSMUSG00000024594.9, intron 3 of 8) 10293 ENSMUSG00000024594.9 ENSMUSG00000024594 ENSMUST00000236709 Prrc1 protein_coding Interval_66014 chr16 30957490 30957719 + 0 NA exon (ENSMUSG00000047434.14, exon 4 of 4) protein_coding-exon (ENSMUSG00000047434.14, exon 4 of 4) 15914 ENSMUSG00000087605.1 ENSMUSG00000087605 ENSMUST00000123905 Gm15742 sense_intronic Interval_145022 chr7 29477168 29477589 + 0 NA intron (ENSMUSG00000030583.16, intron 1 of 2) protein_coding-intron (ENSMUSG00000030583.16, intron 2 of 22) -47165 ENSMUSG00000074224.3 ENSMUSG00000074224 ENSMUST00000098602 4932431P20Rik transcribed_unitary_pseudogene Interval_163139 chr9 15599420 15599635 + 0 NA intron (ENSMUSG00000039977.16, intron 7 of 9) protein_coding-intron (ENSMUSG00000039977.16, intron 7 of 13) -20330 ENSMUSG00000111299.1 ENSMUSG00000111299 ENSMUST00000216952 4930540M03Rik antisense Interval_95842 chr2 117189241 117189460 + 0 NA Intergenic Intergenic 4223 ENSMUSG00000076376.1 ENSMUSG00000076376 ENSMUST00000102421 Mir674 miRNA Interval_151570 chr7 123954446 123955338 + 0 NA Intergenic Intergenic -12683 ENSMUSG00000084484.1 ENSMUSG00000084484 ENSMUST00000122535 Gm23788 snRNA Interval_78535 chr18 14562824 14563209 + 0 NA Intergenic Intergenic -7131 ENSMUSG00000053740.8 ENSMUSG00000053740 ENSMUST00000066378 Gm6457 processed_pseudogene Interval_131460 chr5 137370323 137370583 + 0 NA intron (ENSMUSG00000029710.15, intron 14 of 17) protein_coding-intron (ENSMUSG00000029710.15, intron 13 of 16) 20023 ENSMUSG00000029710.15 ENSMUSG00000029710 ENSMUST00000111054 Ephb4 protein_coding Interval_170417 chr9 107783136 107783347 + 0 NA intron (ENSMUSG00000032582.14, intron 16 of 20) protein_coding-intron (ENSMUSG00000032582.14, intron 16 of 20) 20433 ENSMUSG00000102899.1 ENSMUSG00000102899 ENSMUST00000194573 Gm37850 antisense Interval_2498 chr1 39755778 39756112 + 0 NA Intergenic Intergenic -34948 ENSMUSG00000057173.8 ENSMUSG00000057173 ENSMUST00000126760 Rfx8 protein_coding Interval_47273 chr13 80408663 80408906 + 0 NA Intergenic Intergenic -84225 ENSMUSG00000114528.1 ENSMUSG00000114528 ENSMUST00000223876 Gm46388 processed_pseudogene Interval_80036 chr18 36793349 36794433 + 0 NA promoter-TSS (ENSMUSG00000001383.9) protein_coding-promoter-TSS (ENSMUSG00000001383.9) -1864 ENSMUSG00000001383.9 ENSMUSG00000001383 ENSMUST00000235399 Zmat2 protein_coding Interval_106264 chr3 95007476 95008436 + 0 NA exon (ENSMUSG00000019338.13, exon 9 of 9) protein_coding-exon (ENSMUSG00000019338.13, exon 9 of 9) -3087 ENSMUSG00000086288.1 ENSMUSG00000086288 ENSMUST00000143287 Gm15265 antisense Interval_1758 chr1 33589712 33589935 + 0 NA intron (ENSMUSG00000026134.11, intron 7 of 13) protein_coding-intron (ENSMUSG00000026134.11, intron 7 of 13) 27009 ENSMUSG00000102714.1 ENSMUSG00000102714 ENSMUST00000192891 Gm37618 TEC Interval_162296 chr8 126852681 126853260 + 0 NA intron (ENSMUSG00000110697.1, intron 1 of 4) lincRNA-intron (ENSMUSG00000110697.1, intron 1 of 8) 13737 ENSMUSG00000110498.1 ENSMUSG00000110498 ENSMUST00000212914 A630001O12Rik lincRNA Interval_61767 chr15 83976847 83977266 + 0 NA intron (ENSMUSG00000022441.17, intron 8 of 31) protein_coding-intron (ENSMUSG00000022441.17, intron 2 of 3) -30457 ENSMUSG00000022441.17 ENSMUSG00000022441 ENSMUST00000122836 Efcab6 protein_coding Interval_113164 chr4 48779395 48779618 + 0 NA Intergenic Intergenic -16544 ENSMUSG00000093240.1 ENSMUSG00000093240 ENSMUST00000175499 Gm24573 rRNA Interval_102745 chr3 30742308 30742607 + 0 NA Intergenic Intergenic -13765 ENSMUSG00000051860.13 ENSMUSG00000051860 ENSMUST00000192872 Samd7 protein_coding Interval_137213 chr6 70117185 70117362 + 0 NA exon (ENSMUSG00000076577.2, exon 2 of 2) IG_V_gene-exon (ENSMUSG00000076577.2, exon 2 of 2) 347 ENSMUSG00000076577.2 ENSMUSG00000076577 ENSMUST00000103378 Igkv8-30 IG_V_gene Interval_77747 chr17 94864367 94867218 + 0 NA intron (ENSMUSG00000095193.2, intron 1 of 3) lincRNA-intron (ENSMUSG00000095193.2, intron 1 of 2) 874 ENSMUSG00000095193.2 ENSMUSG00000095193 ENSMUST00000108007 Gm20939 lincRNA Interval_27857 chr11 70421825 70422080 + 0 NA Intergenic Intergenic -4601 ENSMUSG00000082370.1 ENSMUSG00000082370 ENSMUST00000121347 Gm12313 processed_pseudogene Interval_5981 chr1 93704046 93706289 + 0 NA TTS (ENSMUSG00000026279.14) protein_coding-TTS (ENSMUSG00000026279.14) 19465 ENSMUSG00000026278.14 ENSMUSG00000026278 ENSMUST00000185685 Bok protein_coding Interval_151504 chr7 123134742 123135008 + 0 NA intron (ENSMUSG00000052707.8, intron 2 of 3) protein_coding-intron (ENSMUSG00000052707.8, intron 2 of 23) -36771 ENSMUSG00000052707.8 ENSMUSG00000052707 ENSMUST00000206126 Tnrc6a protein_coding Interval_63570 chr15 102106549 102109909 + 0 NA TTS (ENSMUSG00000037003.16) protein_coding-TTS (ENSMUSG00000037003.16) 3804 ENSMUSG00000037003.16 ENSMUSG00000037003 ENSMUST00000229800 Tns2 protein_coding Interval_117269 chr4 121173650 121174484 + 0 NA intron (ENSMUSG00000049878.13, intron 2 of 5) protein_coding-intron (ENSMUSG00000049878.13, intron 4 of 7) 39410 ENSMUSG00000064547.1 ENSMUSG00000064547 ENSMUST00000082613 Gm22982 misc_RNA Interval_106067 chr3 92309367 92309908 + 0 NA Intergenic Intergenic -6983 ENSMUSG00000050092.3 ENSMUSG00000050092 ENSMUST00000061038 Sprr2b protein_coding Interval_151766 chr7 126518797 126519626 + 0 NA Intergenic Intergenic -15856 ENSMUSG00000032637.15 ENSMUSG00000032637 ENSMUST00000179818 Atxn2l protein_coding Interval_12284 chr1 191391273 191391737 + 0 NA intron (ENSMUSG00000026626.11, intron 1 of 1) protein_coding-intron (ENSMUSG00000026626.11, intron 1 of 12) 7794 ENSMUSG00000026626.11 ENSMUSG00000026626 ENSMUST00000194832 Ppp2r5a protein_coding Interval_85895 chr19 32795687 32796130 + 0 NA intron (ENSMUSG00000013663.7, intron 3 of 4) protein_coding-intron (ENSMUSG00000013663.7, intron 3 of 8) -15317 ENSMUSG00000013663.7 ENSMUSG00000013663 ENSMUST00000154806 Pten protein_coding Interval_133623 chr6 7732527 7733481 + 0 NA Intergenic Intergenic -33390 ENSMUSG00000107394.1 ENSMUSG00000107394 ENSMUST00000203458 1700012J15Rik lincRNA Interval_93889 chr2 78026054 78027076 + 0 NA Intergenic Intergenic -24612 ENSMUSG00000085431.7 ENSMUSG00000085431 ENSMUST00000144728 4930440I19Rik lincRNA Interval_24916 chr11 41233740 41233937 + 0 NA Intergenic Intergenic 15001 ENSMUSG00000086475.1 ENSMUSG00000086475 ENSMUST00000133945 Platr13 lincRNA Interval_163375 chr9 21146726 21147200 + 0 NA intron (ENSMUSG00000019471.10, intron 1 of 5) protein_coding-intron (ENSMUSG00000019471.10, intron 1 of 7) -3769 ENSMUSG00000019471.10 ENSMUSG00000019471 ENSMUST00000215866 Cdc37 protein_coding Interval_157840 chr8 74851832 74852346 + 0 NA Intergenic Intergenic -18152 ENSMUSG00000079011.9 ENSMUSG00000079011 ENSMUST00000137218 Gm11033 lincRNA Interval_37394 chr12 66367732 66368547 + 0 NA intron (ENSMUSG00000114093.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000114093.1, intron 1 of 2) 246 ENSMUSG00000114093.1 ENSMUSG00000114093 ENSMUST00000221562 Gm47979 lincRNA Interval_33322 chr11 115919925 115920892 + 0 NA intron (ENSMUSG00000020752.11, intron 6 of 7) protein_coding-intron (ENSMUSG00000020752.11, intron 6 of 18) -4619 ENSMUSG00000087072.1 ENSMUSG00000087072 ENSMUST00000134391 Recql5os1 antisense Interval_156347 chr8 47594893 47595966 + 0 NA Intergenic Intergenic 3761 ENSMUSG00000098402.1 ENSMUSG00000098402 ENSMUST00000184727 Gm27409 miRNA Interval_83880 chr19 5306200 5308011 + 0 NA promoter-TSS (ENSMUSG00000118263.1) antisense-promoter-TSS (ENSMUSG00000118263.1) 54 ENSMUSG00000118263.1 ENSMUSG00000118263 ENSMUST00000235637 Gm42064 antisense Interval_137475 chr6 72668043 72668514 + 0 NA intron (ENSMUSG00000055799.13, intron 2 of 5) protein_coding-intron (ENSMUSG00000055799.13, intron 3 of 11) 3126 ENSMUSG00000055799.13 ENSMUSG00000055799 ENSMUST00000182651 Tcf7l1 protein_coding Interval_53108 chr14 54506475 54506983 + 0 NA TTS (ENSMUSG00000023110.12) protein_coding-TTS (ENSMUSG00000023110.12) 10664 ENSMUSG00000023110.12 ENSMUSG00000023110 ENSMUST00000132801 Prmt5 protein_coding Interval_25718 chr11 51076529 51076945 + 0 NA Intergenic Intergenic -8350 ENSMUSG00000072982.1 ENSMUSG00000072982 ENSMUST00000101255 9230009I02Rik lincRNA Interval_61361 chr15 81064294 81064694 + 0 NA intron (ENSMUSG00000042292.18, intron 2 of 13) protein_coding-intron (ENSMUSG00000042292.18, intron 1 of 12) 2518 ENSMUSG00000042292.18 ENSMUSG00000042292 ENSMUST00000147921 Mrtfa protein_coding Interval_82175 chr18 68328771 68329755 + 0 NA Intergenic Intergenic -8340 ENSMUSG00000007480.5 ENSMUSG00000007480 ENSMUST00000239469 Mc5r protein_coding Interval_171560 chr9 119211692 119212147 + 0 NA intron (ENSMUSG00000070280.13, intron 1 of 10) protein_coding-intron (ENSMUSG00000070280.13, intron 1 of 10) -2821 ENSMUSG00000074028.4 ENSMUSG00000074028 ENSMUST00000084797 Slc22a13 protein_coding Interval_95522 chr2 111246515 111246867 + 0 NA intron (ENSMUSG00000084933.1, intron 4 of 4) antisense-intron (ENSMUSG00000084933.1, intron 4 of 4) -7825 ENSMUSG00000063844.5 ENSMUSG00000063844 ENSMUST00000073322 Olfr1276 protein_coding Interval_151067 chr7 118276512 118278175 + 0 NA Intergenic Intergenic -1980 ENSMUSG00000108980.1 ENSMUSG00000108980 ENSMUST00000207365 Gm45155 lincRNA Interval_115891 chr4 105907548 105909426 + 0 NA Intergenic Intergenic 67398 ENSMUSG00000089065.1 ENSMUSG00000089065 ENSMUST00000158440 Gm24363 misc_RNA Interval_137819 chr6 82740118 82740809 + 0 NA intron (ENSMUSG00000000628.10, intron 7 of 17) protein_coding-intron (ENSMUSG00000000628.10, intron 7 of 17) -23819 ENSMUSG00000090293.1 ENSMUSG00000090293 ENSMUST00000168990 Gm17034 antisense Interval_64716 chr16 14430677 14431619 + 0 NA intron (ENSMUSG00000023088.17, intron 12 of 30) protein_coding-intron (ENSMUSG00000023088.17, intron 12 of 30) 48341 ENSMUSG00000089106.1 ENSMUSG00000089106 ENSMUST00000158481 Gm23116 snRNA Interval_4644 chr1 75624423 75624624 + 0 NA promoter-TSS (ENSMUSG00000082528.1) processed_pseudogene-promoter-TSS (ENSMUSG00000082528.1) -131 ENSMUSG00000082528.1 ENSMUSG00000082528 ENSMUST00000120832 Gm15182 processed_pseudogene Interval_63097 chr15 99049236 99050230 + 0 NA Intergenic Intergenic -5441 ENSMUSG00000023484.14 ENSMUSG00000023484 ENSMUST00000229268 Prph protein_coding Interval_56403 chr14 118521174 118521392 + 0 NA intron (ENSMUSG00000032849.14, intron 24 of 29) protein_coding-intron (ENSMUSG00000032849.14, intron 25 of 30) -42789 ENSMUSG00000115075.1 ENSMUSG00000115075 ENSMUST00000227627 Gm49033 processed_pseudogene Interval_80995 chr18 52478267 52478622 + 0 NA intron (ENSMUSG00000024528.8, intron 3 of 3) protein_coding-intron (ENSMUSG00000024528.8, intron 3 of 7) -4705 ENSMUSG00000098000.1 ENSMUSG00000098000 ENSMUST00000183003 Gm27026 processed_pseudogene Interval_109938 chr3 152019884 152020294 + 0 NA Intergenic Intergenic 31635 ENSMUSG00000104659.1 ENSMUSG00000104659 ENSMUST00000197267 Gm43619 lincRNA Interval_24131 chr11 30631554 30632134 + 0 NA intron (ENSMUSG00000060923.5, intron 3 of 3) protein_coding-intron (ENSMUSG00000060923.5, intron 3 of 3) 17743 ENSMUSG00000060923.5 ENSMUSG00000060923 ENSMUST00000074613 Acyp2 protein_coding Interval_70594 chr17 12203375 12204001 + 0 NA intron (ENSMUSG00000023827.8, intron 3 of 3) protein_coding-intron (ENSMUSG00000023827.8, intron 3 of 8) 13767 ENSMUSG00000063911.4 ENSMUSG00000063911 ENSMUST00000074412 Tdgf1-ps2 processed_pseudogene Interval_3588 chr1 59784238 59784497 + 0 NA intron (ENSMUSG00000067336.6, intron 1 of 12) protein_coding-intron (ENSMUSG00000067336.6, intron 1 of 12) -16896 ENSMUSG00000104052.1 ENSMUSG00000104052 ENSMUST00000194136 Gm38125 TEC Interval_19461 chr10 99608714 99609361 + 0 NA promoter-TSS (ENSMUSG00000111962.1) lincRNA-promoter-TSS (ENSMUSG00000111962.1) -134 ENSMUSG00000111962.1 ENSMUSG00000111962 ENSMUST00000218263 Gm20110 lincRNA Interval_8778 chr1 151011020 151011488 + 0 NA Intergenic Intergenic 10214 ENSMUSG00000099622.1 ENSMUSG00000099622 ENSMUST00000191173 Gm29188 lincRNA Interval_152489 chr7 133434565 133435817 + 0 NA Intergenic Intergenic -101990 ENSMUSG00000109619.1 ENSMUSG00000109619 ENSMUST00000209700 Gm45672 lincRNA Interval_170540 chr9 108600350 108600563 + 0 NA Intergenic Intergenic -2880 ENSMUSG00000006675.10 ENSMUSG00000006675 ENSMUST00000193621 P4htm protein_coding Interval_109089 chr3 135673555 135673988 + 0 NA intron (ENSMUSG00000028163.17, intron 1 of 11) protein_coding-intron (ENSMUSG00000028163.17, intron 1 of 24) -19205 ENSMUSG00000106149.1 ENSMUSG00000106149 ENSMUST00000196513 Gm43430 TEC Interval_95242 chr2 105113789 105114635 + 0 NA intron (ENSMUSG00000074987.9, intron 1 of 3) antisense-intron (ENSMUSG00000074987.9, intron 1 of 6) 7839 ENSMUSG00000099166.1 ENSMUSG00000099166 ENSMUST00000184714 Gm27715 misc_RNA Interval_168246 chr9 78168949 78169641 + 0 NA exon (ENSMUSG00000009828.15, exon 14 of 14) protein_coding-exon (ENSMUSG00000009828.15, exon 14 of 14) 6338 ENSMUSG00000065037.1 ENSMUSG00000065037 ENSMUST00000083103 Rn7sk misc_RNA Interval_26125 chr11 54566914 54567244 + 0 NA intron (ENSMUSG00000037533.20, intron 5 of 28) protein_coding-intron (ENSMUSG00000037533.20, intron 5 of 28) -59260 ENSMUSG00000037533.20 ENSMUSG00000037533 ENSMUST00000136494 Rapgef6 protein_coding Interval_107443 chr3 107748355 107748758 + 0 NA TTS (ENSMUSG00000014599.10) protein_coding-TTS (ENSMUSG00000014599.10) 2185 ENSMUSG00000014599.10 ENSMUSG00000014599 ENSMUST00000153114 Csf1 protein_coding Interval_125285 chr5 65950511 65951779 + 0 NA promoter-TSS (ENSMUSG00000106768.1) TEC-promoter-TSS (ENSMUSG00000106768.1) -160 ENSMUSG00000106768.1 ENSMUSG00000106768 ENSMUST00000200913 4930480C01Rik TEC Interval_978 chr1 13616838 13617526 + 0 NA Intergenic Intergenic 21229 ENSMUSG00000025937.6 ENSMUSG00000025937 ENSMUST00000156222 Lactb2 protein_coding Interval_102944 chr3 33063600 33064111 + 0 NA intron (ENSMUSG00000087625.1, intron 3 of 7) protein_coding-intron (ENSMUSG00000027674.16, intron 3 of 14) 12501 ENSMUSG00000102498.1 ENSMUSG00000102498 ENSMUST00000193649 Gm19445 TEC Interval_67952 chr16 60637039 60637465 + 0 NA promoter-TSS (ENSMUSG00000116853.1) processed_pseudogene-promoter-TSS (ENSMUSG00000116853.1) -666 ENSMUSG00000116853.1 ENSMUSG00000116853 ENSMUST00000231440 Gm49609 processed_pseudogene Interval_13802 chr10 22676245 22676576 + 0 NA intron (ENSMUSG00000037490.5, intron 2 of 4) protein_coding-intron (ENSMUSG00000037490.5, intron 2 of 4) 27402 ENSMUSG00000037490.5 ENSMUSG00000037490 ENSMUST00000159174 Slc2a12 protein_coding Interval_40422 chr12 104788135 104789874 + 0 NA intron (ENSMUSG00000021097.15, intron 6 of 14) protein_coding-intron (ENSMUSG00000021097.15, intron 6 of 12) -66952 ENSMUSG00000041415.10 ENSMUSG00000041415 ENSMUST00000222002 Dicer1 protein_coding Interval_76646 chr17 83087671 83087901 + 0 NA Intergenic Intergenic -9360 ENSMUSG00000117399.1 ENSMUSG00000117399 ENSMUST00000234397 Gm19689 processed_transcript Interval_172849 chrX 52124158 52125094 + 0 NA intron (ENSMUSG00000031119.4, intron 1 of 8) protein_coding-intron (ENSMUSG00000031119.4, intron 1 of 8) 40626 ENSMUSG00000031119.4 ENSMUSG00000031119 ENSMUST00000033450 Gpc4 protein_coding Interval_54892 chr14 76049613 76050087 + 0 NA Intergenic Intergenic -38985 ENSMUSG00000067995.4 ENSMUSG00000067995 ENSMUST00000088922 Gtf2f2 protein_coding Interval_124806 chr5 54333008 54333337 + 0 NA Intergenic Intergenic -16819 ENSMUSG00000105912.1 ENSMUSG00000105912 ENSMUST00000197424 Gm10440 lincRNA Interval_138857 chr6 92665472 92666218 + 0 NA intron (ENSMUSG00000030020.13, intron 2 of 8) protein_coding-intron (ENSMUSG00000030020.13, intron 2 of 8) -98479 ENSMUSG00000030020.13 ENSMUSG00000030020 ENSMUST00000113445 Prickle2 protein_coding Interval_168676 chr9 85733613 85734562 + 0 NA intron (ENSMUSG00000035941.15, intron 4 of 27) protein_coding-intron (ENSMUSG00000035941.15, intron 4 of 28) -14991 ENSMUSG00000103715.1 ENSMUSG00000103715 ENSMUST00000195799 4933431K14Rik TEC Interval_153217 chr7 142522358 142523015 + 0 NA Intergenic Intergenic -10475 ENSMUSG00000037772.13 ENSMUSG00000037772 ENSMUST00000141098 Mrpl23 protein_coding Interval_136331 chr6 53164258 53165370 + 0 NA Intergenic Intergenic 6921 ENSMUSG00000108028.1 ENSMUSG00000108028 ENSMUST00000203654 Gm8143 processed_pseudogene Interval_162958 chr9 13748820 13749962 + 0 NA promoter-TSS (ENSMUSG00000031918.16) protein_coding-promoter-TSS (ENSMUSG00000031918.16) 72 ENSMUSG00000031918.16 ENSMUSG00000031918 ENSMUST00000146901 Mtmr2 protein_coding Interval_137712 chr6 81168891 81169134 + 0 NA Intergenic Intergenic 252246 ENSMUSG00000107691.1 ENSMUSG00000107691 ENSMUST00000203247 Gm43901 processed_pseudogene Interval_171816 chr9 121424659 121424896 + 0 NA intron (ENSMUSG00000032536.12, intron 1 of 12) protein_coding-intron (ENSMUSG00000032536.12, intron 2 of 15) 69733 ENSMUSG00000032532.7 ENSMUSG00000032532 ENSMUST00000217581 Cck protein_coding Interval_33984 chr11 119836737 119837321 + 0 NA intron (ENSMUSG00000025583.15, intron 12 of 32) protein_coding-intron (ENSMUSG00000025583.15, intron 13 of 33) -2664 ENSMUSG00000085081.1 ENSMUSG00000085081 ENSMUST00000127450 Rptoros antisense Interval_126520 chr5 89514967 89515151 + 0 NA Intergenic Intergenic -7801 ENSMUSG00000104715.1 ENSMUSG00000104715 ENSMUST00000197930 Gm43515 TEC Interval_50529 chr14 14702311 14703777 + 0 NA promoter-TSS (ENSMUSG00000021733.11) protein_coding-promoter-TSS (ENSMUSG00000021733.11) -35 ENSMUSG00000021733.11 ENSMUSG00000021733 ENSMUST00000225613 Slc4a7 protein_coding Interval_149416 chr7 98326061 98326266 + 0 NA Intergenic Intergenic 34024 ENSMUSG00000049580.12 ENSMUSG00000049580 ENSMUST00000206770 Tsku protein_coding Interval_58064 chr15 27577987 27578571 + 0 NA intron (ENSMUSG00000022265.7, intron 1 of 4) protein_coding-intron (ENSMUSG00000022265.7, intron 8 of 11) 6785 ENSMUSG00000098416.1 ENSMUSG00000098416 ENSMUST00000184426 Mir7117 miRNA Interval_97362 chr2 135450201 135450444 + 0 NA intron (ENSMUSG00000051177.16, intron 32 of 32) protein_coding-intron (ENSMUSG00000051177.16, intron 31 of 31) 133262 ENSMUSG00000085631.1 ENSMUSG00000085631 ENSMUST00000129868 9630028H03Rik antisense Interval_164886 chr9 42816812 42817937 + 0 NA intron (ENSMUSG00000032017.14, intron 2 of 20) protein_coding-intron (ENSMUSG00000032017.14, intron 2 of 20) 44755 ENSMUSG00000076355.2 ENSMUSG00000076355 ENSMUST00000102400 Gm27509 miRNA Interval_127299 chr5 102222737 102223256 + 0 NA Intergenic Intergenic 60705 ENSMUSG00000106189.1 ENSMUSG00000106189 ENSMUST00000196547 Gm42933 processed_pseudogene Interval_16093 chr10 60696748 60697418 + 0 NA promoter-TSS (ENSMUSG00000012819.15) protein_coding-promoter-TSS (ENSMUSG00000012819.15) 55700 ENSMUSG00000020100.15 ENSMUSG00000020100 ENSMUST00000144989 Slc29a3 protein_coding Interval_44914 chr13 49718711 49719408 + 0 NA intron (ENSMUSG00000037851.13, intron 20 of 33) protein_coding-intron (ENSMUSG00000037851.13, intron 20 of 33) 4940 ENSMUSG00000077360.1 ENSMUSG00000077360 ENSMUST00000104172 Gm23482 snoRNA Interval_173939 chrX 113888199 113888960 + 0 NA Intergenic Intergenic -10125 ENSMUSG00000087765.1 ENSMUSG00000087765 ENSMUST00000157140 Gm23985 snoRNA Interval_169798 chr9 101513741 101514270 + 0 NA Intergenic Intergenic -64652 ENSMUSG00000061486.7 ENSMUSG00000061486 ENSMUST00000075243 Gm5161 processed_pseudogene Interval_149806 chr7 101679540 101680184 + 0 NA intron (ENSMUSG00000001829.17, intron 2 of 16) protein_coding-intron (ENSMUSG00000001829.17, intron 2 of 15) 16089 ENSMUSG00000001829.17 ENSMUSG00000001829 ENSMUST00000150832 Clpb protein_coding Interval_155887 chr8 40647115 40648181 + 0 NA Intergenic Intergenic -12851 ENSMUSG00000039431.16 ENSMUSG00000039431 ENSMUST00000174537 Mtmr7 protein_coding Interval_164891 chr9 42860101 42860558 + 0 NA intron (ENSMUSG00000032017.14, intron 1 of 20) protein_coding-intron (ENSMUSG00000032017.14, intron 1 of 20) 1800 ENSMUSG00000076355.2 ENSMUSG00000076355 ENSMUST00000102400 Gm27509 miRNA Interval_35191 chr12 17938430 17938944 + 0 NA intron (ENSMUSG00000113536.1, intron 2 of 2) transcribed_unprocessed_pseudogene-intron (ENSMUSG00000113536.1, intron 1 of 1) 5523 ENSMUSG00000113536.1 ENSMUSG00000113536 ENSMUST00000221062 Gm49327 transcribed_unprocessed_pseudogene Interval_151231 chr7 119897676 119898871 + 0 NA intron (ENSMUSG00000030922.12, intron 1 of 3) protein_coding-intron (ENSMUSG00000030922.12, intron 1 of 4) -1975 ENSMUSG00000048787.13 ENSMUSG00000048787 ENSMUST00000207488 Dcun1d3 protein_coding Interval_122263 chr5 20779517 20780087 + 0 NA intron (ENSMUSG00000039987.15, intron 10 of 17) protein_coding-intron (ENSMUSG00000039987.15, intron 10 of 17) -26288 ENSMUSG00000082716.1 ENSMUSG00000082716 ENSMUST00000118086 Rpl31-ps5 processed_pseudogene Interval_38581 chr12 80244344 80245193 + 0 NA intron (ENSMUSG00000015143.15, intron 1 of 20) protein_coding-intron (ENSMUSG00000015143.15, intron 1 of 20) 14016 ENSMUSG00000015143.15 ENSMUSG00000015143 ENSMUST00000220351 Actn1 protein_coding Interval_162212 chr8 126007451 126007829 + 0 NA intron (ENSMUSG00000033998.9, intron 1 of 3) protein_coding-intron (ENSMUSG00000033998.9, intron 1 of 2) 12204 ENSMUSG00000033998.9 ENSMUSG00000033998 ENSMUST00000212831 Kcnk1 protein_coding Interval_80768 chr18 46937338 46940212 + 0 NA Intergenic Intergenic 3401 ENSMUSG00000117411.1 ENSMUSG00000117411 ENSMUST00000234725 Gm3744 processed_pseudogene Interval_122584 chr5 23978616 23978903 + 0 NA intron (ENSMUSG00000028995.14, intron 9 of 10) protein_coding-intron (ENSMUSG00000028995.14, intron 10 of 10) 6270 ENSMUSG00000028995.14 ENSMUSG00000028995 ENSMUST00000147179 Fam126a protein_coding Interval_133096 chr5 149773220 149774838 + 0 NA Intergenic Intergenic 34497 ENSMUSG00000051950.10 ENSMUSG00000051950 ENSMUST00000201088 B3glct protein_coding Interval_83442 chr18 85570224 85570530 + 0 NA Intergenic Intergenic 146348 ENSMUSG00000117854.1 ENSMUSG00000117854 ENSMUST00000237113 Gm7612 processed_pseudogene Interval_171272 chr9 115869580 115870568 + 0 NA Intergenic Intergenic -67068 ENSMUSG00000056880.12 ENSMUSG00000056880 ENSMUST00000121770 Gadl1 protein_coding Interval_106909 chr3 101797566 101798044 + 0 NA Intergenic Intergenic 49681 ENSMUSG00000105642.1 ENSMUSG00000105642 ENSMUST00000199434 Gm43134 lincRNA Interval_102934 chr3 32934652 32935057 + 0 NA exon (ENSMUSG00000056900.13, exon 21 of 21) protein_coding-exon (ENSMUSG00000056900.13, exon 21 of 21) -39822 ENSMUSG00000104283.1 ENSMUSG00000104283 ENSMUST00000195007 Gm37459 antisense Interval_141248 chr6 126513133 126513575 + 0 NA Intergenic Intergenic 22058 ENSMUSG00000045534.4 ENSMUSG00000045534 ENSMUST00000060972 Kcna5 protein_coding Interval_59827 chr15 59596309 59597280 + 0 NA intron (ENSMUSG00000059586.10, intron 7 of 7) protein_coding-intron (ENSMUSG00000059586.10, intron 6 of 6) -21796 ENSMUSG00000115896.1 ENSMUSG00000115896 ENSMUST00000229684 Gm36677 lincRNA Interval_96629 chr2 126637241 126637455 + 0 NA intron (ENSMUSG00000027361.15, intron 8 of 8) protein_coding-intron (ENSMUSG00000027361.15, intron 9 of 9) -2661 ENSMUSG00000088200.1 ENSMUSG00000088200 ENSMUST00000157575 Gm23753 snRNA Interval_66092 chr16 31551741 31552451 + 0 NA Intergenic Intergenic 41124 ENSMUSG00000116793.1 ENSMUSG00000116793 ENSMUST00000232216 Gm34256 lincRNA Interval_12422 chr1 193329934 193331093 + 0 NA intron (ENSMUSG00000026639.18, intron 15 of 26) protein_coding-intron (ENSMUSG00000026639.18, intron 11 of 22) -36327 ENSMUSG00000103895.1 ENSMUSG00000103895 ENSMUST00000191875 Gm37942 TEC Interval_107265 chr3 105065615 105065857 + 0 NA Intergenic Intergenic -1108 ENSMUSG00000051788.4 ENSMUSG00000051788 ENSMUST00000070584 4930564D02Rik protein_coding Interval_27209 chr11 64116228 64117568 + 0 NA Intergenic Intergenic 37316 ENSMUSG00000087497.7 ENSMUSG00000087497 ENSMUST00000146333 2810001G20Rik antisense Interval_58938 chr15 40232189 40232850 + 0 NA Intergenic Intergenic -46420 ENSMUSG00000092855.1 ENSMUSG00000092855 ENSMUST00000175114 Gm25958 miRNA Interval_142167 chr6 137754101 137754906 + 0 NA promoter-TSS (ENSMUSG00000030225.11) protein_coding-promoter-TSS (ENSMUSG00000030225.11) 9463 ENSMUSG00000030224.10 ENSMUSG00000030224 ENSMUST00000137235 Strap protein_coding Interval_118071 chr4 128774436 128774923 + 0 NA intron (ENSMUSG00000028799.15, intron 8 of 8) protein_coding-intron (ENSMUSG00000028799.15, intron 7 of 7) 19315 ENSMUSG00000028794.13 ENSMUSG00000028794 ENSMUST00000030585 A3galt2 protein_coding Interval_24943 chr11 41808869 41810654 + 0 NA intron (ENSMUSG00000087306.7, intron 3 of 8) processed_transcript-intron (ENSMUSG00000087306.7, intron 3 of 8) -19942 ENSMUSG00000084293.1 ENSMUSG00000084293 ENSMUST00000119666 Gm12143 processed_pseudogene Interval_83561 chr18 89580436 89580732 + 0 NA intron (ENSMUSG00000073514.4, intron 2 of 7) protein_coding-intron (ENSMUSG00000073514.4, intron 2 of 7) -20515 ENSMUSG00000073514.4 ENSMUSG00000073514 ENSMUST00000160328 Dok6 protein_coding Interval_37152 chr12 59029612 59030698 + 0 NA Intergenic Intergenic 5489 ENSMUSG00000060121.15 ENSMUSG00000060121 ENSMUST00000182710 Gemin2 protein_coding Interval_77306 chr17 87934104 87935129 + 0 NA Intergenic Intergenic 13639 ENSMUSG00000093922.1 ENSMUSG00000093922 ENSMUST00000179601 Rpl36-ps4 protein_coding Interval_50214 chr14 10210786 10211691 + 0 NA intron (ENSMUSG00000060579.13, intron 1 of 5) protein_coding-intron (ENSMUSG00000060579.13, intron 5 of 9) 32618 ENSMUSG00000114391.1 ENSMUSG00000114391 ENSMUST00000225711 Gm48439 antisense Interval_164541 chr9 38168073 38168684 + 0 NA Intergenic Intergenic 12443 ENSMUSG00000045528.1 ENSMUSG00000045528 ENSMUST00000062535 Olfr891 protein_coding Interval_40455 chr12 104984636 104985980 + 0 NA intron (ENSMUSG00000054150.12, intron 1 of 16) protein_coding-intron (ENSMUSG00000054150.12, intron 1 of 16) 13369 ENSMUSG00000054150.12 ENSMUSG00000054150 ENSMUST00000095439 Syne3 protein_coding Interval_30020 chr11 88727707 88729060 + 0 NA exon (ENSMUSG00000087574.1, exon 4 of 4) lincRNA-exon (ENSMUSG00000087574.1, exon 4 of 4) 9738 ENSMUSG00000087574.1 ENSMUSG00000087574 ENSMUST00000125967 C030037D09Rik lincRNA Interval_42146 chr13 9169476 9169754 + 0 NA exon (ENSMUSG00000033499.14, exon 2 of 2) protein_coding-exon (ENSMUSG00000033499.14, exon 2 of 2) -28734 ENSMUSG00000099428.1 ENSMUSG00000099428 ENSMUST00000191066 Gm28155 processed_pseudogene Interval_80667 chr18 46109756 46109941 + 0 NA Intergenic Intergenic 3411 ENSMUSG00000104009.1 ENSMUSG00000104009 ENSMUST00000193986 Gm38337 TEC Interval_64309 chr16 10383788 10384792 + 0 NA intron (ENSMUSG00000039179.13, intron 3 of 5) protein_coding-intron (ENSMUSG00000039179.13, intron 3 of 6) 11158 ENSMUSG00000039179.13 ENSMUSG00000039179 ENSMUST00000115831 Tekt5 protein_coding Interval_24663 chr11 35744656 35745731 + 0 NA Intergenic Intergenic -24291 ENSMUSG00000018846.8 ENSMUSG00000018846 ENSMUST00000018990 Pank3 protein_coding Interval_167718 chr9 72265101 72265534 + 0 NA Intergenic Intergenic -8178 ENSMUSG00000089530.1 ENSMUSG00000089530 ENSMUST00000158905 Gm25163 snRNA Interval_7141 chr1 127170592 127171445 + 0 NA Intergenic Intergenic -34010 ENSMUSG00000036155.13 ENSMUSG00000036155 ENSMUST00000171405 Mgat5 protein_coding Interval_144389 chr7 24856575 24857442 + 0 NA Intergenic Intergenic -3938 ENSMUSG00000108302.1 ENSMUSG00000108302 ENSMUST00000205486 Gm18207 processed_pseudogene Interval_124001 chr5 37091038 37091639 + 0 NA TTS (ENSMUSG00000088707.1) rRNA-TTS (ENSMUSG00000088707.1) 1022 ENSMUSG00000088707.1 ENSMUSG00000088707 ENSMUST00000158082 Gm25551 rRNA Interval_107886 chr3 116594431 116595773 + 0 NA promoter-TSS (ENSMUSG00000027959.14) protein_coding-promoter-TSS (ENSMUSG00000027959.14) -11626 ENSMUSG00000033439.12 ENSMUSG00000033439 ENSMUST00000198103 Trmt13 protein_coding Interval_99123 chr2 157352961 157355046 + 0 NA Intergenic Intergenic -6497 ENSMUSG00000027643.9 ENSMUSG00000027643 ENSMUST00000126630 Ghrh protein_coding Interval_129910 chr5 123034019 123034334 + 0 NA Intergenic Intergenic -1824 ENSMUSG00000105107.1 ENSMUSG00000105107 ENSMUST00000197455 Gm43412 TEC Interval_171803 chr9 121297089 121298118 + 0 NA promoter-TSS (ENSMUSG00000032536.12) protein_coding-promoter-TSS (ENSMUSG00000032536.12) 91 ENSMUSG00000032536.12 ENSMUSG00000032536 ENSMUST00000209446 Trak1 protein_coding Interval_35791 chr12 29840050 29840625 + 0 NA exon (ENSMUSG00000061911.15, exon 1 of 7) protein_coding-exon (ENSMUSG00000061911.15, exon 1 of 7) -11211 ENSMUSG00000061911.15 ENSMUSG00000061911 ENSMUST00000219744 Myt1l protein_coding Interval_76051 chr17 74590509 74590852 + 0 NA intron (ENSMUSG00000024073.16, intron 11 of 72) protein_coding-intron (ENSMUSG00000024073.16, intron 11 of 72) 26439 ENSMUSG00000097546.1 ENSMUSG00000097546 ENSMUST00000181387 Gm26749 antisense Interval_65574 chr16 23481653 23483030 + 0 NA intron (ENSMUSG00000022887.9, intron 8 of 8) protein_coding-intron (ENSMUSG00000022887.9, intron 8 of 15) -31929 ENSMUSG00000116481.1 ENSMUSG00000116481 ENSMUST00000229821 Gm49514 processed_pseudogene Interval_67450 chr16 48821211 48821420 + 0 NA Intergenic Intergenic 4459 ENSMUSG00000022650.7 ENSMUSG00000022650 ENSMUST00000023328 Retnlb protein_coding Interval_167826 chr9 72894690 72895331 + 0 NA intron (ENSMUSG00000036030.9, intron 15 of 19) protein_coding-intron (ENSMUSG00000036030.9, intron 15 of 19) 5965 ENSMUSG00000102330.1 ENSMUSG00000102330 ENSMUST00000193259 Gm37234 TEC Interval_74414 chr17 50035760 50037233 + 0 NA TTS (ENSMUSG00000039316.14) protein_coding-TTS (ENSMUSG00000039316.14) 63669 ENSMUSG00000118535.1 ENSMUSG00000118535 ENSMUST00000239097 AC133946.1 unitary_pseudogene Interval_31357 chr11 100233016 100234082 + 0 NA Intergenic Intergenic -1471 ENSMUSG00000084257.1 ENSMUSG00000084257 ENSMUST00000121423 Gm11597 unprocessed_pseudogene Interval_171524 chr9 119021464 119022327 + 0 NA intron (ENSMUSG00000047409.13, intron 3 of 5) protein_coding-intron (ENSMUSG00000047409.13, intron 3 of 7) -9901 ENSMUSG00000065513.1 ENSMUSG00000065513 ENSMUST00000083579 Mir26a-1 miRNA Interval_96416 chr2 122319091 122320193 + 0 NA intron (ENSMUSG00000033268.8, intron 4 of 32) protein_coding-intron (ENSMUSG00000033268.8, intron 4 of 32) 3970 ENSMUSG00000033268.8 ENSMUSG00000033268 ENSMUST00000099461 Duox1 protein_coding Interval_163771 chr9 25519278 25519555 + 0 NA intron (ENSMUSG00000036611.5, intron 2 of 7) protein_coding-intron (ENSMUSG00000036611.5, intron 2 of 7) 19789 ENSMUSG00000088876.1 ENSMUSG00000088876 ENSMUST00000158251 Gm25861 snoRNA Interval_30077 chr11 89028203 89029048 + 0 NA Intergenic Intergenic 29249 ENSMUSG00000000275.16 ENSMUSG00000000275 ENSMUST00000000284 Trim25 protein_coding Interval_97368 chr2 135521376 135521729 + 0 NA intron (ENSMUSG00000085631.1, intron 1 of 1) antisense-intron (ENSMUSG00000085631.1, intron 1 of 1) 62032 ENSMUSG00000085631.1 ENSMUSG00000085631 ENSMUST00000129868 9630028H03Rik antisense Interval_171844 chr9 121697269 121698193 + 0 NA intron (ENSMUSG00000061536.13, intron 1 of 1) protein_coding-intron (ENSMUSG00000061536.13, intron 2 of 7) -4689 ENSMUSG00000061536.13 ENSMUSG00000061536 ENSMUST00000214595 Sec22c protein_coding Interval_83980 chr19 5921706 5922092 + 0 NA intron (ENSMUSG00000045664.5, intron 1 of 1) protein_coding-intron (ENSMUSG00000045664.5, intron 1 of 1) 2917 ENSMUSG00000045664.5 ENSMUSG00000045664 ENSMUST00000055458 Cdc42ep2 protein_coding Interval_30343 chr11 93733561 93733843 + 0 NA Intergenic Intergenic 38620 ENSMUSG00000080872.1 ENSMUSG00000080872 ENSMUST00000122414 Gm11506 processed_pseudogene Interval_16764 chr10 68022005 68022650 + 0 NA intron (ENSMUSG00000037846.18, intron 7 of 14) protein_coding-intron (ENSMUSG00000037846.18, intron 7 of 14) 4299 ENSMUSG00000086838.1 ENSMUSG00000086838 ENSMUST00000143555 Gm16212 antisense Interval_50007 chr13 119651517 119651725 + 0 NA TTS (ENSMUSG00000074715.3) protein_coding-TTS (ENSMUSG00000074715.3) 2105 ENSMUSG00000074715.3 ENSMUSG00000074715 ENSMUST00000225880 Ccl28 protein_coding Interval_51653 chr14 31130525 31131574 + 0 NA promoter-TSS (ENSMUSG00000071547.4) protein_coding-promoter-TSS (ENSMUSG00000071547.4) -2093 ENSMUSG00000058351.11 ENSMUSG00000058351 ENSMUST00000090205 Smim4 protein_coding Interval_153192 chr7 142278196 142278632 + 0 NA Intergenic Intergenic 2525 ENSMUSG00000089731.3 ENSMUSG00000089731 ENSMUST00000106074 Gm10013 unprocessed_pseudogene Interval_99700 chr2 164389219 164389946 + 0 NA promoter-TSS (ENSMUSG00000017002.14) protein_coding-promoter-TSS (ENSMUSG00000017002.14) -487 ENSMUSG00000017002.14 ENSMUSG00000017002 ENSMUST00000167427 Slpi protein_coding Interval_3818 chr1 63243776 63244256 + 0 NA Intergenic Intergenic 4483 ENSMUSG00000102536.1 ENSMUSG00000102536 ENSMUST00000194370 1700039I01Rik TEC Interval_97307 chr2 133529644 133529826 + 0 NA Intergenic Intergenic -22424 ENSMUSG00000027358.6 ENSMUSG00000027358 ENSMUST00000028836 Bmp2 protein_coding Interval_160349 chr8 108674435 108675701 + 0 NA intron (ENSMUSG00000038872.10, intron 6 of 15) protein_coding-intron (ENSMUSG00000038872.10, intron 6 of 15) -62525 ENSMUSG00000104292.1 ENSMUSG00000104292 ENSMUST00000191614 Gm38042 TEC Interval_67753 chr16 56869858 56870091 + 0 NA intron (ENSMUSG00000022754.6, intron 1 of 5) protein_coding-intron (ENSMUSG00000022754.6, intron 1 of 5) -2259 ENSMUSG00000022754.6 ENSMUSG00000022754 ENSMUST00000135672 Tmem45a protein_coding Interval_170047 chr9 104050935 104051288 + 0 NA intron (ENSMUSG00000032557.13, intron 8 of 8) protein_coding-intron (ENSMUSG00000032557.13, intron 8 of 11) -2216 ENSMUSG00000104268.1 ENSMUSG00000104268 ENSMUST00000193563 Gm37750 TEC Interval_111017 chr4 11242185 11242982 + 0 NA intron (ENSMUSG00000040738.10, intron 6 of 26) protein_coding-intron (ENSMUSG00000040738.10, intron 6 of 27) -6615 ENSMUSG00000040738.10 ENSMUSG00000040738 ENSMUST00000147372 Ints8 protein_coding Interval_142949 chr6 147236099 147236877 + 0 NA Intergenic Intergenic 7313 ENSMUSG00000086021.1 ENSMUSG00000086021 ENSMUST00000153521 Gm15767 lincRNA Interval_86693 chr19 42663685 42664843 + 0 NA Intergenic Intergenic 35638 ENSMUSG00000077768.1 ENSMUSG00000077768 ENSMUST00000104580 Gm25216 snoRNA Interval_71438 chr17 23748851 23749566 + 0 NA promoter-TSS (ENSMUSG00000097006.7) antisense-promoter-TSS (ENSMUSG00000097006.7) -28 ENSMUSG00000097006.7 ENSMUSG00000097006 ENSMUST00000180547 9530082P21Rik antisense Interval_63206 chr15 99735872 99736080 + 0 NA exon (ENSMUSG00000023021.15, exon 10 of 10) protein_coding-exon (ENSMUSG00000023021.15, exon 10 of 10) 10299 ENSMUSG00000023020.3 ENSMUSG00000023020 ENSMUST00000238530 Cox14 protein_coding Interval_123552 chr5 33457969 33459083 + 0 NA Intergenic Intergenic -21062 ENSMUSG00000107248.1 ENSMUSG00000107248 ENSMUST00000200726 Gm43851 lincRNA Interval_4268 chr1 72266011 72266209 + 0 NA TTS (ENSMUSG00000026189.13) protein_coding-TTS (ENSMUSG00000026189.13) 11102 ENSMUSG00000093843.1 ENSMUSG00000093843 ENSMUST00000179876 Gm25939 snRNA Interval_18747 chr10 89884892 89885613 + 0 NA intron (ENSMUSG00000058589.14, intron 1 of 16) protein_coding-intron (ENSMUSG00000058589.14, intron 1 of 17) 11743 ENSMUSG00000058589.14 ENSMUSG00000058589 ENSMUST00000183024 Anks1b protein_coding Interval_32054 chr11 104851761 104852198 + 0 NA intron (ENSMUSG00000040838.10, intron 58 of 187) protein_coding-intron (ENSMUSG00000040838.10, intron 58 of 187) 37563 ENSMUSG00000081513.1 ENSMUSG00000081513 ENSMUST00000120176 Gm11623 processed_pseudogene Interval_25996 chr11 53395539 53396075 + 0 NA intron (ENSMUSG00000049470.13, intron 4 of 6) protein_coding-intron (ENSMUSG00000049470.13, intron 7 of 20) 5405 ENSMUSG00000064719.1 ENSMUSG00000064719 ENSMUST00000082785 Gm25930 snRNA Interval_48661 chr13 100932684 100932885 + 0 NA intron (ENSMUSG00000100596.1, intron 2 of 2) lincRNA-intron (ENSMUSG00000100596.1, intron 2 of 2) 14031 ENSMUSG00000114759.1 ENSMUSG00000114759 ENSMUST00000223572 Gm10257 processed_pseudogene Interval_6066 chr1 95735034 95735980 + 0 NA Intergenic Intergenic -2689 ENSMUSG00000102718.1 ENSMUSG00000102718 ENSMUST00000194989 Gm37761 TEC Interval_28230 chr11 74550581 74551102 + 0 NA intron (ENSMUSG00000038807.19, intron 3 of 25) protein_coding-intron (ENSMUSG00000038807.19, intron 3 of 25) 60074 ENSMUSG00000038807.19 ENSMUSG00000038807 ENSMUST00000145524 Rap1gap2 protein_coding Interval_47904 chr13 94284670 94285868 + 0 NA exon (ENSMUSG00000021687.14, exon 1 of 9) protein_coding-exon (ENSMUSG00000021687.14, exon 1 of 9) -8748 ENSMUSG00000113494.1 ENSMUSG00000113494 ENSMUST00000220853 Gm48102 lincRNA Interval_174379 chrX 150867434 150867848 + 0 NA Intergenic Intergenic 17675 ENSMUSG00000087149.8 ENSMUSG00000087149 ENSMUST00000148862 Itih5l-ps transcribed_unprocessed_pseudogene Interval_152018 chr7 128296701 128298570 + 0 NA promoter-TSS (ENSMUSG00000030780.15) protein_coding-promoter-TSS (ENSMUSG00000030780.15) 473 ENSMUSG00000030780.15 ENSMUSG00000030780 ENSMUST00000137677 BC017158 protein_coding Interval_81162 chr18 55196126 55197766 + 0 NA Intergenic Intergenic 17106 ENSMUSG00000088227.1 ENSMUSG00000088227 ENSMUST00000157602 Gm22597 snRNA Interval_88314 chr2 3658548 3658989 + 0 NA intron (ENSMUSG00000026655.15, intron 2 of 4) protein_coding-intron (ENSMUSG00000026655.15, intron 2 of 4) 21822 ENSMUSG00000080703.2 ENSMUSG00000080703 ENSMUST00000118615 Gm13183 processed_pseudogene Interval_127157 chr5 100685493 100686063 + 0 NA intron (ENSMUSG00000035273.14, intron 10 of 10) protein_coding-intron (ENSMUSG00000035273.14, intron 10 of 11) 14919 ENSMUSG00000085269.1 ENSMUSG00000085269 ENSMUST00000123463 Gm15777 antisense Interval_56009 chr14 104091354 104091527 + 0 NA Intergenic Intergenic -64298 ENSMUSG00000115727.1 ENSMUSG00000115727 ENSMUST00000227414 4930432J09Rik lincRNA Interval_51404 chr14 27253091 27253804 + 0 NA intron (ENSMUSG00000021895.10, intron 1 of 10) protein_coding-intron (ENSMUSG00000021895.10, intron 1 of 10) 15385 ENSMUSG00000114888.1 ENSMUSG00000114888 ENSMUST00000225718 Gm49616 TEC Interval_51791 chr14 32213195 32213778 + 0 NA promoter-TSS (ENSMUSG00000021911.16) protein_coding-promoter-TSS (ENSMUSG00000021911.16) -11640 ENSMUSG00000013701.13 ENSMUSG00000013701 ENSMUST00000168813 Timm23 protein_coding Interval_73150 chr17 35105903 35106726 + 0 NA Intergenic Intergenic -1965 ENSMUSG00000034482.2 ENSMUSG00000034482 ENSMUST00000037849 Ly6g5c protein_coding Interval_120382 chr4 148216441 148216703 + 0 NA Intergenic Intergenic 44179 ENSMUSG00000041544.11 ENSMUSG00000041544 ENSMUST00000129734 Disp3 protein_coding Interval_142936 chr6 147085167 147087004 + 0 NA intron (ENSMUSG00000072662.2, intron 1 of 1) protein_coding-intron (ENSMUSG00000072662.2, intron 1 of 2) 916 ENSMUSG00000072662.2 ENSMUSG00000072662 ENSMUST00000123367 Mansc4 protein_coding Interval_136909 chr6 64137316 64137688 + 0 NA intron (ENSMUSG00000071424.10, intron 8 of 8) protein_coding-intron (ENSMUSG00000071424.10, intron 8 of 15) 45363 ENSMUSG00000107700.1 ENSMUSG00000107700 ENSMUST00000203031 Gm20144 processed_pseudogene Interval_82178 chr18 68358235 68358642 + 0 NA Intergenic Intergenic 20835 ENSMUSG00000007480.5 ENSMUSG00000007480 ENSMUST00000239469 Mc5r protein_coding Interval_24898 chr11 40971395 40972344 + 0 NA Intergenic Intergenic 63254 ENSMUSG00000065916.1 ENSMUSG00000065916 ENSMUST00000083982 Gm24446 snRNA Interval_127544 chr5 104987479 104988542 + 0 NA promoter-TSS (ENSMUSG00000104899.1) processed_pseudogene-promoter-TSS (ENSMUSG00000104899.1) -267 ENSMUSG00000104899.1 ENSMUSG00000104899 ENSMUST00000197462 Gm43855 processed_pseudogene Interval_130104 chr5 124299050 124300332 + 0 NA TTS (ENSMUSG00000105228.1) TEC-TTS (ENSMUSG00000105228.1) 2136 ENSMUSG00000105228.1 ENSMUSG00000105228 ENSMUST00000200448 Gm43340 TEC Interval_155287 chr8 30869320 30869546 + 0 NA Intergenic Intergenic -134475 ENSMUSG00000109614.1 ENSMUSG00000109614 ENSMUST00000211579 Gm45252 processed_pseudogene Interval_61437 chr15 81612657 81613002 + 0 NA promoter-TSS (ENSMUSG00000055024.12) protein_coding-promoter-TSS (ENSMUSG00000055024.12) -8233 ENSMUSG00000055024.12 ENSMUSG00000055024 ENSMUST00000206431 Ep300 protein_coding Interval_48119 chr13 96377054 96378095 + 0 NA TTS (ENSMUSG00000113743.1) processed_pseudogene-TTS (ENSMUSG00000113743.1) 644 ENSMUSG00000113743.1 ENSMUSG00000113743 ENSMUST00000221090 Gm8712 processed_pseudogene Interval_112355 chr4 40794171 40794743 + 0 NA Intergenic Intergenic -18893 ENSMUSG00000056412.6 ENSMUSG00000056412 ENSMUST00000121600 Psenen-ps processed_pseudogene Interval_170367 chr9 107472946 107473564 + 0 NA intron (ENSMUSG00000010066.15, intron 3 of 37) protein_coding-intron (ENSMUSG00000010066.15, intron 3 of 37) -28224 ENSMUSG00000091425.1 ENSMUSG00000091425 ENSMUST00000164032 Gm17118 antisense Interval_632 chr1 9276094 9276277 + 0 NA intron (ENSMUSG00000025909.16, intron 1 of 4) protein_coding-intron (ENSMUSG00000025909.16, intron 1 of 4) -10737 ENSMUSG00000102871.1 ENSMUSG00000102871 ENSMUST00000195180 Gm37143 TEC Interval_40724 chr12 107947670 107948093 + 0 NA intron (ENSMUSG00000048251.15, intron 1 of 1) protein_coding-intron (ENSMUSG00000048251.15, intron 3 of 3) 55533 ENSMUSG00000048251.15 ENSMUSG00000048251 ENSMUST00000109891 Bcl11b protein_coding Interval_40458 chr12 105008836 105010661 + 0 NA promoter-TSS (ENSMUSG00000054150.12) protein_coding-promoter-TSS (ENSMUSG00000054150.12) -11071 ENSMUSG00000054150.12 ENSMUSG00000054150 ENSMUST00000095439 Syne3 protein_coding Interval_144205 chr7 19939845 19940104 + 0 NA intron (ENSMUSG00000040498.7, intron 4 of 5) protein_coding-intron (ENSMUSG00000040498.7, intron 3 of 4) 9598 ENSMUSG00000109281.1 ENSMUSG00000109281 ENSMUST00000207343 Gm44651 processed_pseudogene Interval_169791 chr9 101426576 101428117 + 0 NA Intergenic Intergenic 8699 ENSMUSG00000101550.1 ENSMUSG00000101550 ENSMUST00000186831 Gm29385 processed_pseudogene Interval_81737 chr18 64226210 64226624 + 0 NA intron (ENSMUSG00000086128.8, intron 2 of 2) antisense-intron (ENSMUSG00000086128.8, intron 2 of 5) -5895 ENSMUSG00000118022.1 ENSMUSG00000118022 ENSMUST00000237134 Prdx1-ps processed_pseudogene Interval_72528 chr17 30499615 30500040 + 0 NA intron (ENSMUSG00000062202.14, intron 3 of 3) protein_coding-intron (ENSMUSG00000062202.14, intron 6 of 11) 15166 ENSMUSG00000103207.1 ENSMUSG00000103207 ENSMUST00000194024 Gm9874 TEC Interval_171348 chr9 116639347 116640690 + 0 NA intron (ENSMUSG00000039607.17, intron 11 of 15) protein_coding-intron (ENSMUSG00000039607.17, intron 10 of 12) 308850 ENSMUSG00000110752.1 ENSMUSG00000110752 ENSMUST00000217456 D730003K21Rik lincRNA Interval_49859 chr13 117238593 117238798 + 0 NA intron (ENSMUSG00000021728.8, intron 3 of 3) protein_coding-intron (ENSMUSG00000021728.8, intron 2 of 8) -17623 ENSMUSG00000091423.2 ENSMUSG00000091423 ENSMUST00000238456 Gm17509 antisense Interval_44287 chr13 43349480 43349880 + 0 NA Intergenic Intergenic -15826 ENSMUSG00000054021.6 ENSMUSG00000054021 ENSMUST00000222106 Sirt5 protein_coding Interval_80644 chr18 45127573 45127988 + 0 NA intron (ENSMUSG00000118013.1, intron 2 of 2) lincRNA-intron (ENSMUSG00000118013.1, intron 2 of 2) 19346 ENSMUSG00000118034.1 ENSMUSG00000118034 ENSMUST00000235151 Gm4839 processed_pseudogene Interval_41602 chr12 116768018 116768258 + 0 NA intron (ENSMUSG00000056553.14, intron 3 of 4) protein_coding-intron (ENSMUSG00000056553.14, intron 3 of 22) 84964 ENSMUSG00000113795.1 ENSMUSG00000113795 ENSMUST00000220994 Gm48119 processed_pseudogene Interval_3354 chr1 57367219 57367526 + 0 NA intron (ENSMUSG00000097519.2, intron 2 of 3) lincRNA-intron (ENSMUSG00000097519.2, intron 2 of 3) 10172 ENSMUSG00000097519.2 ENSMUSG00000097519 ENSMUST00000181949 4930558J18Rik lincRNA Interval_219 KV575233.1 208403 208630 + 0 NA NA NA NA NA Interval_154617 chr8 22088125 22088336 + 0 NA intron (ENSMUSG00000037738.11, intron 15 of 18) protein_coding-intron (ENSMUSG00000037738.11, intron 15 of 19) 19214 ENSMUSG00000063362.13 ENSMUSG00000063362 ENSMUST00000134474 Alg11 protein_coding Interval_42510 chr13 14295580 14295808 + 0 NA intron (ENSMUSG00000021301.9, intron 7 of 17) protein_coding-intron (ENSMUSG00000021301.9, intron 15 of 28) -73756 ENSMUSG00000113563.1 ENSMUSG00000113563 ENSMUST00000221355 Gm2492 processed_pseudogene Interval_113827 chr4 59175006 59175342 + 0 NA Intergenic Intergenic -12018 ENSMUSG00000082978.1 ENSMUSG00000082978 ENSMUST00000118446 Rpsa-ps11 processed_pseudogene Interval_29833 chr11 87154387 87154702 + 0 NA intron (ENSMUSG00000018548.15, intron 8 of 23) protein_coding-intron (ENSMUSG00000018548.15, intron 8 of 23) -27586 ENSMUSG00000085310.7 ENSMUSG00000085310 ENSMUST00000155828 Gm11491 antisense Interval_98462 chr2 152578382 152578760 + 0 NA TTS (ENSMUSG00000118649.1) unprocessed_pseudogene-TTS (ENSMUSG00000118649.1) 381 ENSMUSG00000118649.1 ENSMUSG00000118649 ENSMUST00000239414 AL845162.1 unprocessed_pseudogene Interval_105225 chr3 83986236 83987041 + 0 NA intron (ENSMUSG00000033767.14, intron 3 of 33) protein_coding-intron (ENSMUSG00000033767.14, intron 3 of 33) 76814 ENSMUSG00000103261.1 ENSMUSG00000103261 ENSMUST00000192340 Gm36981 TEC Interval_125671 chr5 73171164 73172620 + 0 NA intron (ENSMUSG00000070733.13, intron 3 of 11) protein_coding-intron (ENSMUSG00000070733.13, intron 3 of 62) 14878 ENSMUSG00000086376.2 ENSMUSG00000086376 ENSMUST00000146728 1700071G01Rik antisense Interval_78894 chr18 21218294 21219327 + 0 NA intron (ENSMUSG00000042680.8, intron 2 of 4) protein_coding-intron (ENSMUSG00000042680.8, intron 2 of 5) 81313 ENSMUSG00000042680.8 ENSMUSG00000042680 ENSMUST00000234115 Garem1 protein_coding Interval_158277 chr8 80771699 80772573 + 0 NA TTS (ENSMUSG00000109584.1) processed_pseudogene-TTS (ENSMUSG00000109584.1) 1445 ENSMUSG00000109584.1 ENSMUSG00000109584 ENSMUST00000210546 Gm7997 processed_pseudogene Interval_128781 chr5 115226501 115226767 + 0 NA Intergenic Intergenic -11345 ENSMUSG00000060152.14 ENSMUSG00000060152 ENSMUST00000140083 Pop5 protein_coding Interval_64269 chr16 10072993 10073866 + 0 NA Intergenic Intergenic -27464 ENSMUSG00000098170.1 ENSMUSG00000098170 ENSMUST00000182416 Gm3890 processed_pseudogene Interval_26055 chr11 53794194 53795455 + 0 NA intron (ENSMUSG00000081769.9, intron 3 of 4) protein_coding-intron (ENSMUSG00000081769.9, intron 3 of 3) -21629 ENSMUSG00000091191.2 ENSMUSG00000091191 ENSMUST00000170390 Gm17334 TEC Interval_61725 chr15 83601136 83601327 + 0 NA Intergenic Intergenic -6074 ENSMUSG00000016757.11 ENSMUSG00000016757 ENSMUST00000134334 Ttll12 protein_coding Interval_105704 chr3 88659913 88660381 + 0 NA Intergenic Intergenic -7005 ENSMUSG00000049741.4 ENSMUSG00000049741 ENSMUST00000063119 Rxfp4 protein_coding Interval_394 chr1 4857439 4858451 + 0 NA promoter-TSS (ENSMUSG00000033813.15) protein_coding-promoter-TSS (ENSMUSG00000033813.15) -93 ENSMUSG00000033813.15 ENSMUSG00000033813 ENSMUST00000165720 Tcea1 protein_coding Interval_56307 chr14 117001571 117002702 + 0 NA intron (ENSMUSG00000058571.11, intron 1 of 9) protein_coding-intron (ENSMUSG00000058571.11, intron 1 of 8) 76605 ENSMUSG00000058571.11 ENSMUSG00000058571 ENSMUST00000078849 Gpc6 protein_coding Interval_104662 chr3 69208412 69209016 + 0 NA Intergenic Intergenic -13705 ENSMUSG00000098207.1 ENSMUSG00000098207 ENSMUST00000183126 Arl14 protein_coding Interval_88252 chr19 61157691 61158691 + 0 NA Intergenic Intergenic 6290 ENSMUSG00000070263.1 ENSMUSG00000070263 ENSMUST00000093750 Gm22365 snRNA Interval_93448 chr2 73139975 73140159 + 0 NA intron (ENSMUSG00000027108.15, intron 7 of 7) protein_coding-intron (ENSMUSG00000027108.15, intron 7 of 10) 8322 ENSMUSG00000083569.1 ENSMUSG00000083569 ENSMUST00000120032 Gm13666 processed_pseudogene Interval_99061 chr2 156925936 156926592 + 0 NA Intergenic Intergenic -10881 ENSMUSG00000080880.1 ENSMUSG00000080880 ENSMUST00000117381 Gm14278 unprocessed_pseudogene Interval_102428 chr3 25452145 25452800 + 0 NA intron (ENSMUSG00000063887.13, intron 5 of 7) protein_coding-intron (ENSMUSG00000063887.13, intron 3 of 5) -93548 ENSMUSG00000087945.1 ENSMUSG00000087945 ENSMUST00000157320 Gm24250 rRNA Interval_12815 chr10 5796237 5798695 + 0 NA Intergenic Intergenic 7134 ENSMUSG00000019773.7 ENSMUSG00000019773 ENSMUST00000142200 Fbxo5 protein_coding Interval_49157 chr13 108797767 108798351 + 0 NA intron (ENSMUSG00000021699.17, intron 3 of 3) protein_coding-intron (ENSMUSG00000021699.17, intron 1 of 16) -62107 ENSMUSG00000021699.17 ENSMUSG00000021699 ENSMUST00000155459 Pde4d protein_coding Interval_133465 chr6 5396481 5396994 + 0 NA intron (ENSMUSG00000042607.15, intron 1 of 3) protein_coding-intron (ENSMUSG00000042607.15, intron 2 of 5) 6310 ENSMUSG00000042607.15 ENSMUSG00000042607 ENSMUST00000183358 Asb4 protein_coding Interval_3470 chr1 58652010 58653244 + 0 NA promoter-TSS (ENSMUSG00000102059.1) transcribed_unprocessed_pseudogene-promoter-TSS (ENSMUSG00000102059.1) -2318 ENSMUSG00000102059.1 ENSMUSG00000102059 ENSMUST00000188643 Gm20257 transcribed_unprocessed_pseudogene Interval_72588 chr17 30844685 30845042 + 0 NA intron (ENSMUSG00000033826.10, intron 86 of 90) protein_coding-intron (ENSMUSG00000033826.10, intron 88 of 92) 12573 ENSMUSG00000117760.1 ENSMUSG00000117760 ENSMUST00000237260 Gm41561 antisense Interval_92240 chr2 57269480 57269733 + 0 NA intron (ENSMUSG00000026827.12, intron 2 of 16) protein_coding-intron (ENSMUSG00000026827.12, intron 2 of 16) 6080 ENSMUSG00000084292.1 ENSMUSG00000084292 ENSMUST00000118714 Gm13535 processed_pseudogene Interval_156305 chr8 47267817 47269256 + 0 NA intron (ENSMUSG00000038143.16, intron 2 of 5) protein_coding-intron (ENSMUSG00000038143.16, intron 1 of 3) -41370 ENSMUSG00000109606.1 ENSMUSG00000109606 ENSMUST00000211539 Gm45537 TEC Interval_144756 chr7 28040256 28040496 + 0 NA Intergenic Intergenic 9672 ENSMUSG00000030603.16 ENSMUSG00000030603 ENSMUST00000126528 Psmc4 protein_coding Interval_170386 chr9 107602141 107602540 + 0 NA promoter-TSS (ENSMUSG00000057969.15) protein_coding-promoter-TSS (ENSMUSG00000057969.15) 4343 ENSMUSG00000057969.15 ENSMUSG00000057969 ENSMUST00000193551 Sema3b protein_coding Interval_22670 chr11 12731094 12731919 + 0 NA Intergenic Intergenic 38693 ENSMUSG00000088509.1 ENSMUSG00000088509 ENSMUST00000157884 Gm22789 snoRNA Interval_37767 chr12 71857776 71858026 + 0 NA intron (ENSMUSG00000034574.10, intron 1 of 14) protein_coding-intron (ENSMUSG00000034574.10, intron 1 of 25) -10610 ENSMUSG00000098224.1 ENSMUSG00000098224 ENSMUST00000183329 Gm7985 processed_pseudogene Interval_121784 chr5 8168967 8169761 + 0 NA intron (ENSMUSG00000040537.17, intron 4 of 29) protein_coding-intron (ENSMUSG00000040537.17, intron 4 of 28) -10272 ENSMUSG00000094226.3 ENSMUSG00000094226 ENSMUST00000178345 Gm21759 processed_pseudogene Interval_65987 chr16 30735237 30736199 + 0 NA Intergenic Intergenic 57537 ENSMUSG00000116570.1 ENSMUSG00000116570 ENSMUST00000231445 Gm49754 lincRNA Interval_168645 chr9 85010416 85010596 + 0 NA Intergenic Intergenic -33991 ENSMUSG00000099779.1 ENSMUSG00000099779 ENSMUST00000189949 Gm8228 processed_pseudogene Interval_164788 chr9 41886442 41886880 + 0 NA exon (ENSMUSG00000111726.1, exon 3 of 3) lincRNA-exon (ENSMUSG00000111726.1, exon 3 of 3) 3943 ENSMUSG00000111726.1 ENSMUSG00000111726 ENSMUST00000217258 Gm40513 lincRNA Interval_105131 chr3 82135230 82135487 + 0 NA intron (ENSMUSG00000033910.13, intron 1 of 4) protein_coding-intron (ENSMUSG00000033910.13, intron 1 of 8) 10247 ENSMUSG00000033910.13 ENSMUSG00000033910 ENSMUST00000194788 Gucy1a1 protein_coding Interval_24744 chr11 36543182 36543573 + 0 NA intron (ENSMUSG00000049336.16, intron 2 of 28) protein_coding-intron (ENSMUSG00000049336.16, intron 2 of 28) -179505 ENSMUSG00000065173.1 ENSMUSG00000065173 ENSMUST00000083239 Gm22127 snRNA Interval_90731 chr2 32166665 32168371 + 0 NA intron (ENSMUSG00000039262.16, intron 1 of 31) protein_coding-intron (ENSMUSG00000039262.16, intron 1 of 29) -5653 ENSMUSG00000099155.1 ENSMUSG00000099155 ENSMUST00000184513 Gm27805 miRNA Interval_159978 chr8 105544685 105545068 + 0 NA intron (ENSMUSG00000013160.7, intron 1 of 7) protein_coding-intron (ENSMUSG00000013160.7, intron 1 of 7) -5400 ENSMUSG00000013160.7 ENSMUSG00000013160 ENSMUST00000144486 Atp6v0d1 protein_coding Interval_93906 chr2 78868047 78869859 + 0 NA promoter-TSS (ENSMUSG00000027011.14) protein_coding-promoter-TSS (ENSMUSG00000027011.14) -287 ENSMUSG00000027011.14 ENSMUSG00000027011 ENSMUST00000153266 Ube2e3 protein_coding Interval_55985 chr14 103684296 103684724 + 0 NA intron (ENSMUSG00000055717.13, intron 3 of 7) protein_coding-intron (ENSMUSG00000055717.13, intron 2 of 6) 14932 ENSMUSG00000089707.1 ENSMUSG00000089707 ENSMUST00000160117 Slain1os antisense Interval_30274 chr11 92730796 92731062 + 0 NA Intergenic Intergenic 40044 ENSMUSG00000081363.2 ENSMUSG00000081363 ENSMUST00000118237 Gm11500 processed_pseudogene Interval_122071 chr5 16111339 16111691 + 0 NA intron (ENSMUSG00000040118.15, intron 1 of 7) protein_coding-intron (ENSMUSG00000040118.15, intron 3 of 38) 4386 ENSMUSG00000105526.1 ENSMUSG00000105526 ENSMUST00000197593 Gm43490 TEC Interval_52709 chr14 48841216 48841806 + 0 NA intron (ENSMUSG00000098682.8, intron 3 of 3) lincRNA-intron (ENSMUSG00000098682.8, intron 3 of 3) -6977 ENSMUSG00000115380.1 ENSMUSG00000115380 ENSMUST00000226725 Gm46453 processed_pseudogene Interval_78576 chr18 14854316 14854598 + 0 NA intron (ENSMUSG00000054321.7, intron 13 of 14) protein_coding-intron (ENSMUSG00000054321.7, intron 13 of 14) 23789 ENSMUSG00000117530.1 ENSMUSG00000117530 ENSMUST00000234669 Gm21055 processed_pseudogene Interval_162270 chr8 126566394 126567322 + 0 NA promoter-TSS (ENSMUSG00000097060.1) antisense-promoter-TSS (ENSMUSG00000097060.1) -112 ENSMUSG00000097060.1 ENSMUSG00000097060 ENSMUST00000181773 Gm26759 antisense Interval_45442 chr13 55189542 55190988 + 0 NA Intergenic Intergenic -21805 ENSMUSG00000021488.8 ENSMUSG00000021488 ENSMUST00000225405 Nsd1 protein_coding Interval_65798 chr16 28914863 28915299 + 0 NA intron (ENSMUSG00000051065.9, intron 1 of 1) protein_coding-intron (ENSMUSG00000051065.9, intron 1 of 1) 36274 ENSMUSG00000116861.1 ENSMUSG00000116861 ENSMUST00000232466 Gm8253 processed_pseudogene Interval_143990 chr7 18798884 18799560 + 0 NA promoter-TSS (ENSMUSG00000004542.15) protein_coding-promoter-TSS (ENSMUSG00000004542.15) -712 ENSMUSG00000004542.15 ENSMUSG00000004542 ENSMUST00000182916 Psg19 protein_coding Interval_70849 chr17 15368466 15369154 + 0 NA promoter-TSS (ENSMUSG00000014773.13) protein_coding-promoter-TSS (ENSMUSG00000014773.13) 3021 ENSMUSG00000014773.13 ENSMUSG00000014773 ENSMUST00000143460 Dll1 protein_coding Interval_117321 chr4 122987951 122988257 + 0 NA Intergenic Intergenic -11235 ENSMUSG00000028654.13 ENSMUSG00000028654 ENSMUST00000147259 Mycl protein_coding Interval_33118 chr11 114567972 114568958 + 0 NA Intergenic Intergenic -96143 ENSMUSG00000083769.1 ENSMUSG00000083769 ENSMUST00000120766 Gm11689 processed_pseudogene Interval_101303 chr2 180259372 180260562 + 0 NA TTS (ENSMUSG00000038990.14) protein_coding-TTS (ENSMUSG00000038990.14) 1798 ENSMUSG00000038990.14 ENSMUSG00000038990 ENSMUST00000135301 Cables2 protein_coding Interval_111641 chr4 25037143 25037337 + 0 NA intron (ENSMUSG00000085885.1, intron 2 of 4) processed_transcript-intron (ENSMUSG00000085885.1, intron 2 of 4) -69791 ENSMUSG00000046219.9 ENSMUSG00000046219 ENSMUST00000139588 C230012O17Rik processed_transcript Interval_36775 chr12 53677688 53678720 + 0 NA intron (ENSMUSG00000021010.9, intron 3 of 10) protein_coding-intron (ENSMUSG00000021010.9, intron 4 of 11) -368358 ENSMUSG00000113179.1 ENSMUSG00000113179 ENSMUST00000221214 1700030L22Rik antisense Interval_173588 chrX 100394942 100395418 + 0 NA TTS (ENSMUSG00000059327.9) protein_coding-TTS (ENSMUSG00000059327.9) 10037 ENSMUSG00000059327.9 ENSMUSG00000059327 ENSMUST00000123547 Eda protein_coding Interval_45234 chr13 53374070 53374969 + 0 NA intron (ENSMUSG00000021468.8, intron 1 of 3) protein_coding-intron (ENSMUSG00000021468.8, intron 1 of 14) 2846 ENSMUSG00000021468.8 ENSMUSG00000021468 ENSMUST00000221709 Sptlc1 protein_coding Interval_99784 chr2 164889165 164889476 + 0 NA intron (ENSMUSG00000039849.6, intron 12 of 16) protein_coding-intron (ENSMUSG00000039849.6, intron 12 of 16) 10016 ENSMUSG00000039849.6 ENSMUSG00000039849 ENSMUST00000130213 Pcif1 protein_coding Interval_29673 chr11 85948420 85948994 + 0 NA Intergenic Intergenic -1788 ENSMUSG00000081632.1 ENSMUSG00000081632 ENSMUST00000118790 Gm11443 processed_pseudogene Interval_2241 chr1 37299594 37300529 + 0 NA promoter-TSS (ENSMUSG00000026113.17) protein_coding-promoter-TSS (ENSMUSG00000026113.17) -364 ENSMUSG00000102231.1 ENSMUSG00000102231 ENSMUST00000192404 1700074A21Rik TEC Interval_86592 chr19 41932680 41934013 + 0 NA promoter-TSS (ENSMUSG00000025157.8) protein_coding-promoter-TSS (ENSMUSG00000025157.8) -98 ENSMUSG00000034321.14 ENSMUSG00000034321 ENSMUST00000237177 Exosc1 protein_coding Interval_81235 chr18 56665971 56667279 + 0 NA Intergenic Intergenic -1153 ENSMUSG00000118275.1 ENSMUSG00000118275 ENSMUST00000235398 Gm50289 processed_pseudogene Interval_51368 chr14 27052207 27052832 + 0 NA intron (ENSMUSG00000040717.6, intron 1 of 12) protein_coding-intron (ENSMUSG00000040717.6, intron 1 of 12) -14878 ENSMUSG00000040717.6 ENSMUSG00000040717 ENSMUST00000225829 Il17rd protein_coding Interval_77727 chr17 94721410 94722139 + 0 NA TTS (ENSMUSG00000055660.9) protein_coding-TTS (ENSMUSG00000055660.9) 28118 ENSMUSG00000055660.9 ENSMUSG00000055660 ENSMUST00000234593 Mettl4 protein_coding Interval_11023 chr1 178485661 178485847 + 0 NA Intergenic Intergenic -43371 ENSMUSG00000026494.12 ENSMUSG00000026494 ENSMUST00000160789 Kif26b protein_coding Interval_46025 chr13 60336498 60336819 + 0 NA Intergenic Intergenic 5209 ENSMUSG00000114460.1 ENSMUSG00000114460 ENSMUST00000225199 Gm10779 TEC Interval_136267 chr6 52431877 52432450 + 0 NA Intergenic Intergenic -60288 ENSMUSG00000107895.1 ENSMUSG00000107895 ENSMUST00000203771 1700094M24Rik lincRNA Interval_85268 chr19 24253713 24254169 + 0 NA Intergenic Intergenic 24230 ENSMUSG00000059363.10 ENSMUSG00000059363 ENSMUST00000132688 Fxn protein_coding Interval_10053 chr1 165388686 165389296 + 0 NA promoter-TSS (ENSMUSG00000026571.12) protein_coding-promoter-TSS (ENSMUSG00000026571.12) 9472 ENSMUSG00000104427.1 ENSMUSG00000104427 ENSMUST00000193181 Gm38368 TEC Interval_13070 chr10 11065839 11066138 + 0 NA intron (ENSMUSG00000019828.13, intron 2 of 9) protein_coding-intron (ENSMUSG00000019828.13, intron 2 of 8) 16262 ENSMUSG00000019828.13 ENSMUSG00000019828 ENSMUST00000156826 Grm1 protein_coding Interval_47868 chr13 94024860 94025208 + 0 NA Intergenic Intergenic -28809 ENSMUSG00000114174.1 ENSMUSG00000114174 ENSMUST00000223240 Cycs-ps3 processed_pseudogene Interval_122009 chr5 13870755 13872108 + 0 NA Intergenic Intergenic -5735 ENSMUSG00000105521.1 ENSMUSG00000105521 ENSMUST00000198653 Gm35702 processed_pseudogene Interval_134974 chr6 34252497 34252835 + 0 NA Intergenic Intergenic -37599 ENSMUSG00000086762.1 ENSMUSG00000086762 ENSMUST00000138275 Gm14546 antisense Interval_107931 chr3 116961154 116962051 + 0 NA intron (ENSMUSG00000033377.14, intron 1 of 5) protein_coding-intron (ENSMUSG00000033377.14, intron 1 of 7) -6665 ENSMUSG00000080907.1 ENSMUSG00000080907 ENSMUST00000117592 4930455H04Rik protein_coding Interval_166026 chr9 55549316 55549585 + 0 NA TTS (ENSMUSG00000034007.10) protein_coding-TTS (ENSMUSG00000034007.10) 6262 ENSMUSG00000064472.1 ENSMUSG00000064472 ENSMUST00000082538 Gm23407 snRNA Interval_22273 chr11 8473350 8473535 + 0 NA intron (ENSMUSG00000020422.14, intron 20 of 30) protein_coding-intron (ENSMUSG00000020422.14, intron 20 of 30) -89589 ENSMUSG00000083553.1 ENSMUSG00000083553 ENSMUST00000117240 Gm11989 processed_pseudogene Interval_28551 chr11 76666284 76666633 + 0 NA Intergenic Intergenic -6012 ENSMUSG00000044243.3 ENSMUSG00000044243 ENSMUST00000056184 Bhlha9 protein_coding Interval_38540 chr12 79984180 79984582 + 0 NA Intergenic Intergenic -4530 ENSMUSG00000112292.1 ENSMUSG00000112292 ENSMUST00000219732 Gm8275 processed_pseudogene Interval_70491 chr17 10744976 10745439 + 0 NA intron (ENSMUSG00000037196.6, intron 2 of 4) protein_coding-intron (ENSMUSG00000037196.6, intron 2 of 4) -62627 ENSMUSG00000089907.2 ENSMUSG00000089907 ENSMUST00000159155 Gm16169 processed_transcript Interval_85650 chr19 29342421 29343056 + 0 NA Intergenic Intergenic -8186 ENSMUSG00000039097.5 ENSMUSG00000039097 ENSMUST00000044143 Rln1 protein_coding Interval_105579 chr3 87874966 87875165 + 0 NA intron (ENSMUSG00000004895.9, intron 1 of 6) protein_coding-intron (ENSMUSG00000004895.9, intron 1 of 6) 10543 ENSMUSG00000004895.9 ENSMUSG00000004895 ENSMUST00000005015 Prcc protein_coding Interval_107954 chr3 117364354 117364559 + 0 NA Intergenic Intergenic -4208 ENSMUSG00000044667.12 ENSMUSG00000044667 ENSMUST00000197743 Plppr4 protein_coding Interval_1636 chr1 30582535 30582819 + 0 NA Intergenic Intergenic 137285 ENSMUSG00000053185.2 ENSMUSG00000053185 ENSMUST00000065469 Gm9898 lincRNA Interval_52539 chr14 47384026 47384893 + 0 NA intron (ENSMUSG00000050335.17, intron 4 of 5) protein_coding-intron (ENSMUSG00000050335.17, intron 4 of 5) 10543 ENSMUSG00000050335.17 ENSMUSG00000050335 ENSMUST00000146468 Lgals3 protein_coding Interval_83948 chr19 5756318 5758786 + 0 NA promoter-TSS (ENSMUSG00000024940.11) protein_coding-promoter-TSS (ENSMUSG00000024940.11) 582 ENSMUSG00000024940.11 ENSMUSG00000024940 ENSMUST00000237180 Ltbp3 protein_coding Interval_102861 chr3 32345531 32346305 + 0 NA intron (ENSMUSG00000027663.12, intron 2 of 6) protein_coding-intron (ENSMUSG00000027663.12, intron 2 of 5) 20096 ENSMUSG00000027663.12 ENSMUSG00000027663 ENSMUST00000195055 Zmat3 protein_coding Interval_27072 chr11 62684646 62685267 + 0 NA Intergenic Intergenic -12262 ENSMUSG00000081852.1 ENSMUSG00000081852 ENSMUST00000119536 Gm12281 processed_pseudogene Interval_15954 chr10 59593119 59594467 + 0 NA intron (ENSMUSG00000009647.13, intron 3 of 3) protein_coding-intron (ENSMUSG00000009647.13, intron 1 of 7) -22271 ENSMUSG00000071280.2 ENSMUSG00000071280 ENSMUST00000238281 Gm10322 antisense Interval_79790 chr18 35125809 35126071 + 0 NA intron (ENSMUSG00000037815.7, intron 1 of 3) protein_coding-intron (ENSMUSG00000037815.7, intron 1 of 17) -38317 ENSMUSG00000117727.1 ENSMUSG00000117727 ENSMUST00000238134 Gm3587 lincRNA Interval_120081 chr4 141700217 141700963 + 0 NA intron (ENSMUSG00000078515.4, intron 5 of 9) protein_coding-intron (ENSMUSG00000078515.4, intron 5 of 9) -14991 ENSMUSG00000040715.12 ENSMUSG00000040715 ENSMUST00000105782 Rsc1a1 protein_coding Interval_119414 chr4 137533676 137534010 + 0 NA intron (ENSMUSG00000028763.18, intron 39 of 96) protein_coding-intron (ENSMUSG00000028763.18, intron 39 of 96) -4443 ENSMUSG00000099134.1 ENSMUSG00000099134 ENSMUST00000184284 Mir7018 miRNA Interval_107767 chr3 113656889 113657191 + 0 NA Intergenic Intergenic -24856 ENSMUSG00000105836.1 ENSMUSG00000105836 ENSMUST00000195893 Gm17954 processed_pseudogene Interval_79996 chr18 36540876 36541954 + 0 NA promoter-TSS (ENSMUSG00000024485.16) protein_coding-promoter-TSS (ENSMUSG00000024485.16) 13264 ENSMUSG00000024485.16 ENSMUSG00000024485 ENSMUST00000235382 Slc4a9 protein_coding Interval_24544 chr11 34228354 34229676 + 0 NA intron (ENSMUSG00000020143.15, intron 50 of 51) protein_coding-intron (ENSMUSG00000020143.15, intron 50 of 51) -20926 ENSMUSG00000047861.2 ENSMUSG00000047861 ENSMUST00000060271 Foxi1 protein_coding Interval_97643 chr2 141857257 141857711 + 0 NA intron (ENSMUSG00000068205.14, intron 3 of 13) protein_coding-intron (ENSMUSG00000068205.14, intron 8 of 17) 18695 ENSMUSG00000082412.1 ENSMUSG00000082412 ENSMUST00000119675 Fau-ps1 processed_pseudogene Interval_83794 chr19 4745451 4745945 + 0 NA intron (ENSMUSG00000067889.6, intron 24 of 36) protein_coding-intron (ENSMUSG00000067889.6, intron 24 of 36) -11207 ENSMUSG00000033760.17 ENSMUSG00000033760 ENSMUST00000183332 Rbm4b protein_coding Interval_100946 chr2 173565900 173566258 + 0 NA Intergenic Intergenic 12201 ENSMUSG00000027517.14 ENSMUSG00000027517 ENSMUST00000147693 Ankrd60 protein_coding Interval_84910 chr19 18710655 18711197 + 0 NA Intergenic Intergenic -2267 ENSMUSG00000047044.7 ENSMUSG00000047044 ENSMUST00000055792 D030056L22Rik protein_coding Interval_149980 chr7 104181338 104181577 + 0 NA intron (ENSMUSG00000042909.4, intron 1 of 1) protein_coding-intron (ENSMUSG00000042909.4, intron 1 of 1) 1935 ENSMUSG00000042909.4 ENSMUSG00000042909 ENSMUST00000052659 Olfr648 protein_coding Interval_90018 chr2 27358434 27358970 + 0 NA intron (ENSMUSG00000009621.18, intron 1 of 29) protein_coding-intron (ENSMUSG00000009621.18, intron 2 of 27) 31998 ENSMUSG00000086669.1 ENSMUSG00000086669 ENSMUST00000156020 AA645442 antisense Interval_20957 chr10 122762865 122763409 + 0 NA intron (ENSMUSG00000034613.12, intron 1 of 3) protein_coding-intron (ENSMUSG00000034613.12, intron 1 of 9) -4727 ENSMUSG00000112417.1 ENSMUSG00000112417 ENSMUST00000219095 A430028G04Rik TEC Interval_110603 chr4 4560521 4560746 + 0 NA Intergenic Intergenic -31914 ENSMUSG00000085155.3 ENSMUSG00000085155 ENSMUST00000136880 Gm11780 processed_pseudogene Interval_22921 chr11 17415358 17415574 + 0 NA Intergenic Intergenic -117047 ENSMUSG00000082797.3 ENSMUSG00000082797 ENSMUST00000117065 Gm12015 processed_pseudogene Interval_117573 chr4 124750946 124752223 + 0 NA promoter-TSS (ENSMUSG00000086589.1) processed_transcript-promoter-TSS (ENSMUSG00000086589.1) -230 ENSMUSG00000086589.1 ENSMUSG00000086589 ENSMUST00000131381 Gm12915 processed_transcript Interval_33979 chr11 119795118 119795340 + 0 NA intron (ENSMUSG00000025583.15, intron 7 of 32) protein_coding-intron (ENSMUSG00000025583.15, intron 7 of 33) 39136 ENSMUSG00000085081.1 ENSMUSG00000085081 ENSMUST00000127450 Rptoros antisense Interval_119037 chr4 135128345 135129369 + 0 NA intron (ENSMUSG00000070691.10, intron 1 of 5) protein_coding-intron (ENSMUSG00000070691.10, intron 1 of 5) -8410 ENSMUSG00000086884.1 ENSMUSG00000086884 ENSMUST00000146152 Gm16225 lincRNA Interval_72264 chr17 28879714 28880558 + 0 NA intron (ENSMUSG00000043286.12, intron 5 of 6) protein_coding-intron (ENSMUSG00000043286.12, intron 5 of 9) -20628 ENSMUSG00000087615.2 ENSMUSG00000087615 ENSMUST00000146779 Pnpla1os antisense Interval_89333 chr2 19414213 19415447 + 0 NA Intergenic Intergenic -13216 ENSMUSG00000109733.1 ENSMUSG00000109733 ENSMUST00000209205 Gm33940 lincRNA Interval_164889 chr9 42844457 42845756 + 0 NA intron (ENSMUSG00000032017.14, intron 1 of 20) protein_coding-intron (ENSMUSG00000032017.14, intron 1 of 20) 17023 ENSMUSG00000076355.2 ENSMUSG00000076355 ENSMUST00000102400 Gm27509 miRNA Interval_172926 chrX 56342983 56343506 + 0 NA Intergenic Intergenic -3156 ENSMUSG00000073176.4 ENSMUSG00000073176 ENSMUST00000101560 Zfp449 protein_coding Interval_47090 chr13 75606262 75606569 + 0 NA Intergenic Intergenic -38481 ENSMUSG00000074800.4 ENSMUSG00000074800 ENSMUST00000099371 Gm4149 processed_pseudogene Interval_18183 chr10 83368678 83369511 + 0 NA exon (ENSMUSG00000020255.8, exon 4 of 4) protein_coding-exon (ENSMUSG00000020255.8, exon 4 of 4) 8873 ENSMUSG00000020255.8 ENSMUSG00000020255 ENSMUST00000020488 D10Wsu102e protein_coding Interval_2519 chr1 39917749 39918842 + 0 NA intron (ENSMUSG00000026074.15, intron 2 of 31) protein_coding-intron (ENSMUSG00000026074.15, intron 2 of 30) 17116 ENSMUSG00000026074.15 ENSMUSG00000026074 ENSMUST00000191657 Map4k4 protein_coding Interval_132758 chr5 147668408 147669099 + 0 NA intron (ENSMUSG00000029648.13, intron 10 of 12) protein_coding-intron (ENSMUSG00000029648.13, intron 10 of 11) -21946 ENSMUSG00000029648.13 ENSMUSG00000029648 ENSMUST00000031652 Flt1 protein_coding Interval_140745 chr6 121002557 121003936 + 0 NA promoter-TSS (ENSMUSG00000051586.17) protein_coding-promoter-TSS (ENSMUSG00000051586.17) 44402 ENSMUSG00000108171.1 ENSMUSG00000108171 ENSMUST00000203013 Gm43915 antisense Interval_59539 chr15 55140820 55141343 + 0 NA intron (ENSMUSG00000022419.16, intron 1 of 4) protein_coding-intron (ENSMUSG00000022419.16, intron 1 of 8) 7628 ENSMUSG00000022419.16 ENSMUSG00000022419 ENSMUST00000226687 Deptor protein_coding Interval_88874 chr2 11930079 11930554 + 0 NA Intergenic Intergenic 30234 ENSMUSG00000103542.1 ENSMUSG00000103542 ENSMUST00000193884 Gm34768 unprocessed_pseudogene Interval_43029 chr13 23329769 23329970 + 0 NA intron (ENSMUSG00000087097.1, intron 2 of 3) antisense-intron (ENSMUSG00000087097.1, intron 2 of 3) 16344 ENSMUSG00000087097.1 ENSMUSG00000087097 ENSMUST00000122940 4930586N03Rik antisense Interval_119156 chr4 135887968 135890257 + 0 NA Intergenic Intergenic 2365 ENSMUSG00000083430.1 ENSMUSG00000083430 ENSMUST00000118683 Gm13006 processed_pseudogene Interval_10459 chr1 171032472 171032818 + 0 NA Intergenic Intergenic 4680 ENSMUSG00000065905.1 ENSMUSG00000065905 ENSMUST00000083971 Gm26110 snRNA Interval_146921 chr7 55870390 55872028 + 0 NA promoter-TSS (ENSMUSG00000030447.15) protein_coding-promoter-TSS (ENSMUSG00000030447.15) -650 ENSMUSG00000030447.15 ENSMUSG00000030447 ENSMUST00000205656 Cyfip1 protein_coding Interval_12782 chr10 5317777 5318260 + 0 NA intron (ENSMUSG00000096054.3, intron 42 of 145) protein_coding-intron (ENSMUSG00000096054.3, intron 42 of 145) -39155 ENSMUSG00000094906.1 ENSMUSG00000094906 ENSMUST00000104408 Gm23573 snRNA Interval_142817 chr6 146136668 146137158 + 0 NA intron (ENSMUSG00000030287.15, intron 2 of 2) protein_coding-intron (ENSMUSG00000030287.15, intron 55 of 56) 95566 ENSMUSG00000030287.15 ENSMUSG00000030287 ENSMUST00000111673 Itpr2 protein_coding Interval_36173 chr12 37659279 37660525 + 0 NA Intergenic Intergenic 90623 ENSMUSG00000114007.1 ENSMUSG00000114007 ENSMUST00000221458 Gm48660 processed_pseudogene Interval_52330 chr14 45140506 45141058 + 0 NA intron (ENSMUSG00000021830.14, intron 19 of 20) protein_coding-intron (ENSMUSG00000021830.14, intron 19 of 20) 10748 ENSMUSG00000115054.1 ENSMUSG00000115054 ENSMUST00000228126 Gm49184 processed_pseudogene Interval_98252 chr2 150479792 150480151 + 0 NA intron (ENSMUSG00000074731.3, intron 1 of 3) protein_coding-intron (ENSMUSG00000074731.3, intron 1 of 3) 5120 ENSMUSG00000074731.3 ENSMUSG00000074731 ENSMUST00000109914 Zfp345 protein_coding Interval_14252 chr10 29804129 29804677 + 0 NA Intergenic Intergenic 22992 ENSMUSG00000111427.1 ENSMUSG00000111427 ENSMUST00000215034 Gm6390 processed_pseudogene Interval_115484 chr4 99320079 99320397 + 0 NA Intergenic Intergenic 24338 ENSMUSG00000070891.2 ENSMUSG00000070891 ENSMUST00000094955 Gm12689 protein_coding Interval_13005 chr10 9151460 9151667 + 0 NA Intergenic Intergenic 73188 ENSMUSG00000112543.1 ENSMUSG00000112543 ENSMUST00000218588 Gm48744 TEC Interval_139861 chr6 111816393 111816574 + 0 NA Intergenic Intergenic -175627 ENSMUSG00000089490.1 ENSMUSG00000089490 ENSMUST00000158865 Gm26362 misc_RNA Interval_107436 chr3 107658484 107659919 + 0 NA Intergenic Intergenic 27879 ENSMUSG00000078604.1 ENSMUSG00000078604 ENSMUST00000106703 Gm10961 protein_coding Interval_146200 chr7 44653627 44654401 + 0 NA exon (ENSMUSG00000030739.18, exon 9 of 42) protein_coding-exon (ENSMUSG00000030739.18, exon 9 of 42) 8586 ENSMUSG00000109352.1 ENSMUSG00000109352 ENSMUST00000209087 Gm18256 processed_pseudogene Interval_156565 chr8 52145114 52145764 + 0 NA Intergenic Intergenic 51617 ENSMUSG00000052825.6 ENSMUSG00000052825 ENSMUST00000182415 Gm9892 processed_pseudogene Interval_139647 chr6 105231776 105232228 + 0 NA promoter-TSS (ENSMUSG00000089587.1) snoRNA-promoter-TSS (ENSMUSG00000089587.1) -603 ENSMUSG00000089587.1 ENSMUSG00000089587 ENSMUST00000158962 Gm23339 snoRNA Interval_89463 chr2 20806581 20807025 + 0 NA promoter-TSS (ENSMUSG00000036617.17) protein_coding-promoter-TSS (ENSMUSG00000036617.17) 52993 ENSMUSG00000036591.16 ENSMUSG00000036591 ENSMUST00000173654 Arhgap21 protein_coding Interval_34622 chr12 8075510 8076305 + 0 NA intron (ENSMUSG00000112694.1, intron 2 of 3) antisense-intron (ENSMUSG00000112694.1, intron 2 of 3) 98259 ENSMUSG00000020609.14 ENSMUSG00000020609 ENSMUST00000171239 Apob protein_coding Interval_140530 chr6 119330575 119332404 + 0 NA promoter-TSS (ENSMUSG00000055003.14) protein_coding-promoter-TSS (ENSMUSG00000055003.14) -2285 ENSMUSG00000055003.14 ENSMUSG00000055003 ENSMUST00000124192 Lrtm2 protein_coding Interval_66961 chr16 38816898 38817854 + 0 NA intron (ENSMUSG00000022798.8, intron 3 of 3) protein_coding-intron (ENSMUSG00000022798.8, intron 3 of 3) 3386 ENSMUSG00000081444.1 ENSMUSG00000081444 ENSMUST00000120118 Gm15803 processed_pseudogene Interval_130735 chr5 130036332 130036825 + 0 NA intron (ENSMUSG00000025532.13, intron 2 of 3) protein_coding-intron (ENSMUSG00000025532.13, intron 2 of 5) 7267 ENSMUSG00000025532.13 ENSMUSG00000025532 ENSMUST00000202691 Crcp protein_coding Interval_137697 chr6 80079893 80080142 + 0 NA intron (ENSMUSG00000052581.13, intron 2 of 2) protein_coding-intron (ENSMUSG00000052581.13, intron 3 of 3) 31341 ENSMUSG00000107498.1 ENSMUSG00000107498 ENSMUST00000204015 Gm44240 TEC Interval_117588 chr4 124867795 124868593 + 0 NA Intergenic Intergenic -6023 ENSMUSG00000042763.9 ENSMUSG00000042763 ENSMUST00000064444 Maneal protein_coding Interval_158487 chr8 84008293 84008768 + 0 NA Intergenic Intergenic 2902 ENSMUSG00000098823.1 ENSMUSG00000098823 ENSMUST00000184463 Mir8111 miRNA Interval_51950 chr14 34190270 34190908 + 0 NA exon (ENSMUSG00000071531.3, exon 2 of 2) protein_coding-exon (ENSMUSG00000071531.3, exon 2 of 2) 11044 ENSMUSG00000071531.3 ENSMUSG00000071531 ENSMUST00000096019 Gprin2 protein_coding Interval_36764 chr12 53274601 53274845 + 0 NA intron (ENSMUSG00000021010.9, intron 1 of 11) protein_coding-intron (ENSMUSG00000021010.9, intron 1 of 11) 26566 ENSMUSG00000021010.9 ENSMUSG00000021010 ENSMUST00000223057 Npas3 protein_coding Interval_140729 chr6 120903395 120904165 + 0 NA intron (ENSMUSG00000004446.12, intron 1 of 6) protein_coding-intron (ENSMUSG00000004446.12, intron 1 of 5) -4893 ENSMUSG00000108125.1 ENSMUSG00000108125 ENSMUST00000204935 Gm17812 processed_pseudogene Interval_114451 chr4 78164617 78164817 + 0 NA intron (ENSMUSG00000028399.18, intron 1 of 6) protein_coding-intron (ENSMUSG00000028399.18, intron 1 of 14) -47238 ENSMUSG00000092492.1 ENSMUSG00000092492 ENSMUST00000173049 B230208B08Rik processed_transcript Interval_109912 chr3 151222403 151222732 + 0 NA Intergenic Intergenic -71596 ENSMUSG00000106157.1 ENSMUSG00000106157 ENSMUST00000196589 4930555A03Rik lincRNA Interval_114199 chr4 66901890 66902554 + 0 NA intron (ENSMUSG00000039005.13, intron 2 of 3) protein_coding-intron (ENSMUSG00000039005.13, intron 2 of 3) 74020 ENSMUSG00000039005.13 ENSMUSG00000039005 ENSMUST00000147008 Tlr4 protein_coding Interval_143552 chr7 12673231 12673682 + 0 NA intron (ENSMUSG00000091045.9, intron 1 of 4) protein_coding-intron (ENSMUSG00000091045.9, intron 1 of 3) 11547 ENSMUSG00000091045.9 ENSMUSG00000091045 ENSMUST00000167771 Vmn2r55 protein_coding Interval_18181 chr10 83345659 83346666 + 0 NA intron (ENSMUSG00000112134.1, intron 1 of 3) lincRNA-intron (ENSMUSG00000112134.1, intron 1 of 3) 1649 ENSMUSG00000112134.1 ENSMUSG00000112134 ENSMUST00000219407 Gm40723 lincRNA Interval_93733 chr2 76320759 76320960 + 0 NA intron (ENSMUSG00000075270.11, intron 1 of 19) protein_coding-intron (ENSMUSG00000075270.11, intron 1 of 19) 2377 ENSMUSG00000105164.1 ENSMUSG00000105164 ENSMUST00000196553 Gm44337 miRNA Interval_135823 chr6 47583830 47584739 + 0 NA promoter-TSS (ENSMUSG00000107628.1) processed_pseudogene-promoter-TSS (ENSMUSG00000107628.1) -932 ENSMUSG00000107628.1 ENSMUSG00000107628 ENSMUST00000203199 Gm44282 processed_pseudogene Interval_141583 chr6 129655060 129655455 + 0 NA intron (ENSMUSG00000052736.15, intron 6 of 7) protein_coding-intron (ENSMUSG00000052736.15, intron 5 of 6) 5358 ENSMUSG00000052736.15 ENSMUSG00000052736 ENSMUST00000149494 Klrc2 protein_coding Interval_140594 chr6 119924093 119924964 + 0 NA TTS (ENSMUSG00000045962.16) protein_coding-TTS (ENSMUSG00000045962.16) 6446 ENSMUSG00000030166.14 ENSMUSG00000030166 ENSMUST00000204319 Rad52 protein_coding Interval_30963 chr11 97449721 97450761 + 0 NA promoter-TSS (ENSMUSG00000049807.16) protein_coding-promoter-TSS (ENSMUSG00000049807.16) 13956 ENSMUSG00000049807.16 ENSMUSG00000049807 ENSMUST00000093940 Arhgap23 protein_coding Interval_144391 chr7 24869437 24870549 + 0 NA promoter-TSS (ENSMUSG00000011349.5) protein_coding-promoter-TSS (ENSMUSG00000011349.5) -64 ENSMUSG00000011349.5 ENSMUSG00000011349 ENSMUST00000011493 Dmrtc2 protein_coding Interval_121998 chr5 13475359 13475701 + 0 NA intron (ENSMUSG00000028883.17, intron 7 of 8) protein_coding-intron (ENSMUSG00000028883.17, intron 4 of 16) -5498 ENSMUSG00000105750.1 ENSMUSG00000105750 ENSMUST00000197721 Gm43130 TEC Interval_125672 chr5 73175599 73175863 + 0 NA intron (ENSMUSG00000070733.13, intron 3 of 11) protein_coding-intron (ENSMUSG00000070733.13, intron 3 of 62) 14686 ENSMUSG00000107109.1 ENSMUSG00000107109 ENSMUST00000201197 Gm42571 TEC Interval_122667 chr5 24558405 24558621 + 0 NA Intergenic Intergenic -3103 ENSMUSG00000038199.12 ENSMUSG00000038199 ENSMUST00000198709 Iqca1l protein_coding Interval_40425 chr12 104812451 104813890 + 0 NA intron (ENSMUSG00000021097.15, intron 1 of 14) protein_coding-intron (ENSMUSG00000021097.15, intron 1 of 12) -44201 ENSMUSG00000021101.2 ENSMUSG00000021101 ENSMUST00000021520 4930408O17Rik lincRNA Interval_59192 chr15 47342827 47344837 + 0 NA Intergenic Intergenic -78083 ENSMUSG00000115534.1 ENSMUSG00000115534 ENSMUST00000227510 Gm7508 processed_pseudogene Interval_81394 chr18 60480986 60481613 + 0 NA intron (ENSMUSG00000038059.7, intron 1 of 1) protein_coding-intron (ENSMUSG00000038059.7, intron 1 of 1) 20277 ENSMUSG00000038059.7 ENSMUSG00000038059 ENSMUST00000237270 Smim3 protein_coding Interval_109786 chr3 147029596 147030521 + 0 NA Intergenic Intergenic -66126 ENSMUSG00000103334.1 ENSMUSG00000103334 ENSMUST00000193142 Gm29771 lincRNA Interval_62216 chr15 88890643 88891682 + 0 NA intron (ENSMUSG00000022388.14, intron 12 of 12) sense_overlapping-intron (ENSMUSG00000093394.1, intron 1 of 1) 363 ENSMUSG00000093394.1 ENSMUSG00000093394 ENSMUST00000176338 Gm20621 sense_overlapping Interval_22315 chr11 8699809 8700271 + 0 NA Intergenic Intergenic -35359 ENSMUSG00000020422.14 ENSMUSG00000020422 ENSMUST00000134823 Tns3 protein_coding Interval_121914 chr5 9521376 9522170 + 0 NA intron (ENSMUSG00000003974.6, intron 3 of 5) protein_coding-intron (ENSMUSG00000003974.6, intron 3 of 5) 80834 ENSMUSG00000106637.1 ENSMUSG00000106637 ENSMUST00000199761 Gm42455 TEC Interval_85708 chr19 29870449 29871726 + 0 NA Intergenic Intergenic 4130 ENSMUSG00000117883.1 ENSMUSG00000117883 ENSMUST00000237701 Gm50380 processed_pseudogene Interval_74332 chr17 49029807 49031078 + 0 NA intron (ENSMUSG00000040490.4, intron 1 of 2) protein_coding-intron (ENSMUSG00000040490.4, intron 1 of 2) 65991 ENSMUSG00000105424.1 ENSMUSG00000105424 ENSMUST00000200509 Gm44304 miRNA Interval_1976 chr1 35360128 35360449 + 0 NA Intergenic Intergenic -181204 ENSMUSG00000077231.1 ENSMUSG00000077231 ENSMUST00000104043 Gm25096 snoRNA Interval_34524 chr12 4892012 4893083 + 0 NA intron (ENSMUSG00000020634.12, intron 3 of 6) protein_coding-intron (ENSMUSG00000020634.12, intron 3 of 6) 14717 ENSMUSG00000020634.12 ENSMUSG00000020634 ENSMUST00000141360 Ubxn2a protein_coding Interval_340 chr1 4336433 4336637 + 0 NA intron (ENSMUSG00000025900.13, intron 3 of 29) protein_coding-intron (ENSMUSG00000025900.13, intron 3 of 29) 28294 ENSMUSG00000104123.1 ENSMUSG00000104123 ENSMUST00000194382 Gm37483 TEC Interval_25179 chr11 44803859 44804521 + 0 NA intron (ENSMUSG00000057098.14, intron 6 of 15) protein_coding-intron (ENSMUSG00000057098.14, intron 6 of 15) -141514 ENSMUSG00000085784.1 ENSMUSG00000085784 ENSMUST00000130493 Gm12158 antisense Interval_161743 chr8 122491039 122491691 + 0 NA exon (ENSMUSG00000014444.17, exon 25 of 51) protein_coding-exon (ENSMUSG00000014444.17, exon 25 of 51) 10020 ENSMUSG00000049482.16 ENSMUSG00000049482 ENSMUST00000212499 Ctu2 protein_coding Interval_173552 chrX 99232239 99233140 + 0 NA Intergenic Intergenic 94558 ENSMUSG00000031217.8 ENSMUSG00000031217 ENSMUST00000151750 Efnb1 protein_coding Interval_20350 chr10 117043551 117044432 + 0 NA intron (ENSMUSG00000112242.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000112242.1, intron 1 of 1) 245 ENSMUSG00000112242.1 ENSMUSG00000112242 ENSMUST00000217799 Gm10747 lincRNA Interval_96723 chr2 127453217 127454095 + 0 NA Intergenic Intergenic -9091 ENSMUSG00000027371.10 ENSMUSG00000027371 ENSMUST00000137502 Fahd2a protein_coding Interval_124507 chr5 49788431 49788983 + 0 NA Intergenic Intergenic 113595 ENSMUSG00000105540.1 ENSMUSG00000105540 ENSMUST00000196623 Gm7988 processed_pseudogene Interval_10853 chr1 176028231 176029592 + 0 NA intron (ENSMUSG00000055214.15, intron 5 of 5) protein_coding-intron (ENSMUSG00000055214.15, intron 5 of 9) 3812 ENSMUSG00000104363.1 ENSMUSG00000104363 ENSMUST00000192680 Gm38081 TEC Interval_102069 chr3 16418720 16419252 + 0 NA Intergenic Intergenic 235750 ENSMUSG00000047213.14 ENSMUSG00000047213 ENSMUST00000108346 Ythdf3 protein_coding Interval_13705 chr10 21251910 21252316 + 0 NA promoter-TSS (ENSMUSG00000111200.1) lincRNA-promoter-TSS (ENSMUSG00000111200.1) 1 ENSMUSG00000111200.1 ENSMUSG00000111200 ENSMUST00000217285 Gm33728 lincRNA Interval_75743 chr17 70974253 70974660 + 0 NA exon (ENSMUSG00000034868.9, exon 4 of 4) protein_coding-exon (ENSMUSG00000034868.9, exon 4 of 4) 4076 ENSMUSG00000034868.9 ENSMUSG00000034868 ENSMUST00000131820 Myl12b protein_coding Interval_116480 chr4 114405587 114407049 + 0 NA promoter-TSS (ENSMUSG00000070867.4) protein_coding-promoter-TSS (ENSMUSG00000070867.4) -406 ENSMUSG00000070867.4 ENSMUSG00000070867 ENSMUST00000094894 Trabd2b protein_coding Interval_33327 chr11 115955332 115958417 + 0 NA intron (ENSMUSG00000020755.9, intron 3 of 3) protein_coding-intron (ENSMUSG00000020755.9, intron 4 of 9) -4769 ENSMUSG00000087064.1 ENSMUSG00000087064 ENSMUST00000132264 Sap30bpos antisense Interval_68225 chr16 69705748 69706359 + 0 NA Intergenic Intergenic 94328 ENSMUSG00000107073.1 ENSMUSG00000107073 ENSMUST00000201886 4930428D20Rik lincRNA Interval_125124 chr5 64706587 64706842 + 0 NA Intergenic Intergenic -8193 ENSMUSG00000097668.2 ENSMUSG00000097668 ENSMUST00000180650 Gm26761 lincRNA Interval_79265 chr18 28632448 28633014 + 0 NA Intergenic Intergenic -29742 ENSMUSG00000117550.1 ENSMUSG00000117550 ENSMUST00000235115 Gm20096 processed_pseudogene Interval_50937 chr14 20879635 20879852 + 0 NA Intergenic Intergenic -23322 ENSMUSG00000114728.1 ENSMUSG00000114728 ENSMUST00000225216 Gm6128 processed_pseudogene Interval_14481 chr10 34206021 34207965 + 0 NA promoter-TSS (ENSMUSG00000039497.8) protein_coding-promoter-TSS (ENSMUSG00000039497.8) 7085 ENSMUSG00000111876.1 ENSMUSG00000111876 ENSMUST00000216782 Gm18346 processed_pseudogene Interval_162656 chr9 7552204 7552536 + 0 NA Intergenic Intergenic -6086 ENSMUSG00000005800.3 ENSMUSG00000005800 ENSMUST00000018765 Mmp8 protein_coding Interval_149976 chr7 104087208 104087403 + 0 NA intron (ENSMUSG00000109824.4, intron 2 of 7) protein_coding-intron (ENSMUSG00000109824.4, intron 2 of 7) -1840 ENSMUSG00000051340.6 ENSMUSG00000051340 ENSMUST00000057104 Olfr645 protein_coding Interval_48484 chr13 99367946 99368278 + 0 NA intron (ENSMUSG00000041632.7, intron 4 of 5) protein_coding-intron (ENSMUSG00000041632.7, intron 4 of 10) 22568 ENSMUSG00000041632.7 ENSMUSG00000041632 ENSMUST00000225973 Mrps27 protein_coding Interval_157434 chr8 70343591 70344691 + 0 NA intron (ENSMUSG00000058301.8, intron 2 of 23) protein_coding-intron (ENSMUSG00000058301.8, intron 2 of 23) 9070 ENSMUSG00000058301.8 ENSMUSG00000058301 ENSMUST00000075666 Upf1 protein_coding Interval_32433 chr11 107518621 107519336 + 0 NA intron (ENSMUSG00000085864.1, intron 4 of 4) lincRNA-intron (ENSMUSG00000085864.1, intron 4 of 4) 8242 ENSMUSG00000085864.1 ENSMUSG00000085864 ENSMUST00000149428 C330019F10Rik lincRNA Interval_128859 chr5 115652550 115653522 + 0 NA promoter-TSS (ENSMUSG00000041609.16) protein_coding-promoter-TSS (ENSMUSG00000041609.16) -3242 ENSMUSG00000041609.16 ENSMUSG00000041609 ENSMUST00000148840 Bicdl1 protein_coding Interval_95681 chr2 114063958 114064640 + 0 NA intron (ENSMUSG00000092201.7, intron 7 of 7) processed_transcript-intron (ENSMUSG00000092201.7, intron 7 of 7) 9052 ENSMUSG00000092397.7 ENSMUSG00000092397 ENSMUST00000155185 C130080G10Rik antisense Interval_76862 chr17 84585148 84585382 + 0 NA intron (ENSMUSG00000117647.1, intron 1 of 2) protein_coding-intron (ENSMUSG00000040852.6, intron 16 of 29) 9715 ENSMUSG00000040852.6 ENSMUSG00000040852 ENSMUST00000235090 Plekhh2 protein_coding Interval_144405 chr7 24957175 24957448 + 0 NA exon (ENSMUSG00000108675.1, exon 2 of 3) lincRNA-exon (ENSMUSG00000108675.1, exon 2 of 3) 2394 ENSMUSG00000108675.1 ENSMUSG00000108675 ENSMUST00000206318 Gm44970 lincRNA Interval_102189 chr3 19303074 19303398 + 0 NA intron (ENSMUSG00000069094.12, intron 1 of 8) protein_coding-intron (ENSMUSG00000069094.12, intron 1 of 12) 7816 ENSMUSG00000069094.12 ENSMUSG00000069094 ENSMUST00000143120 Pde7a protein_coding Interval_86782 chr19 43857249 43858046 + 0 NA promoter-TSS (ENSMUSG00000088490.1) snRNA-promoter-TSS (ENSMUSG00000088490.1) -296 ENSMUSG00000088490.1 ENSMUSG00000088490 ENSMUST00000157865 Gm24400 snRNA Interval_11201 chr1 180123448 180123986 + 0 NA promoter-TSS (ENSMUSG00000026490.18) protein_coding-promoter-TSS (ENSMUSG00000026490.18) 24434 ENSMUSG00000103636.1 ENSMUSG00000103636 ENSMUST00000195719 Gm38331 TEC Interval_525 chr1 7010331 7011078 + 0 NA Intergenic Intergenic -3058 ENSMUSG00000102213.1 ENSMUSG00000102213 ENSMUST00000191883 Gm37489 processed_pseudogene Interval_118084 chr4 128866619 128866850 + 0 NA intron (ENSMUSG00000085701.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000085701.1, intron 1 of 1) 2662 ENSMUSG00000084011.1 ENSMUSG00000084011 ENSMUST00000120199 Gm12969 processed_pseudogene Interval_38172 chr12 76176934 76178359 + 0 NA promoter-TSS (ENSMUSG00000021055.14) protein_coding-promoter-TSS (ENSMUSG00000021055.14) -387 ENSMUSG00000021055.14 ENSMUSG00000021055 ENSMUST00000076634 Esr2 protein_coding Interval_27599 chr11 68967539 68968435 + 0 NA promoter-TSS (ENSMUSG00000018740.14) protein_coding-promoter-TSS (ENSMUSG00000018740.14) -160 ENSMUSG00000018740.14 ENSMUSG00000018740 ENSMUST00000018884 Slc25a35 protein_coding Interval_77599 chr17 92741756 92742183 + 0 NA Intergenic Intergenic -22893 ENSMUSG00000117625.1 ENSMUSG00000117625 ENSMUST00000234136 Gm21018 processed_pseudogene Interval_113769 chr4 58463781 58465016 + 0 NA intron (ENSMUSG00000038668.14, intron 3 of 3) protein_coding-intron (ENSMUSG00000038668.14, intron 3 of 3) 19427 ENSMUSG00000083834.1 ENSMUSG00000083834 ENSMUST00000119701 Gm12577 processed_pseudogene Interval_169084 chr9 92038486 92039104 + 0 NA Intergenic Intergenic -77677 ENSMUSG00000109896.1 ENSMUSG00000109896 ENSMUST00000209894 Gm31409 lincRNA Interval_63716 chr15 103009377 103009877 + 0 NA promoter-TSS (ENSMUSG00000001661.5) protein_coding-promoter-TSS (ENSMUSG00000001661.5) -5283 ENSMUSG00000076010.1 ENSMUSG00000076010 ENSMUST00000102056 Mir615 miRNA Interval_45336 chr13 54538889 54539137 + 0 NA intron (ENSMUSG00000043183.18, intron 2 of 2) protein_coding-intron (ENSMUSG00000043183.18, intron 4 of 8) 26320 ENSMUSG00000025871.18 ENSMUSG00000025871 ENSMUST00000126295 4833439L19Rik protein_coding Interval_126660 chr5 91868380 91869037 + 0 NA Intergenic Intergenic 44695 ENSMUSG00000107301.1 ENSMUSG00000107301 ENSMUST00000202249 Gm43688 lincRNA Interval_2070 chr1 36243832 36244647 + 0 NA promoter-TSS (ENSMUSG00000037470.14) protein_coding-promoter-TSS (ENSMUSG00000037470.14) 481 ENSMUSG00000037470.14 ENSMUSG00000037470 ENSMUST00000192159 Uggt1 protein_coding Interval_68955 chr16 89675003 89675966 + 0 NA Intergenic Intergenic -41344 ENSMUSG00000116651.1 ENSMUSG00000116651 ENSMUST00000232201 Gm17844 processed_pseudogene Interval_157860 chr8 75018058 75019019 + 0 NA intron (ENSMUSG00000034518.14, intron 1 of 6) protein_coding-intron (ENSMUSG00000034518.14, intron 5 of 10) -15169 ENSMUSG00000042870.15 ENSMUSG00000042870 ENSMUST00000212278 Tom1 protein_coding Interval_105874 chr3 89857442 89858375 + 0 NA exon (ENSMUSG00000046280.9, exon 6 of 6) protein_coding-exon (ENSMUSG00000046280.9, exon 6 of 6) 20019 ENSMUSG00000046280.9 ENSMUSG00000046280 ENSMUST00000197454 She protein_coding Interval_27947 chr11 71353253 71353623 + 0 NA Intergenic Intergenic -64880 ENSMUSG00000096455.1 ENSMUSG00000096455 ENSMUST00000104152 Gm23311 snoRNA Interval_33290 chr11 115730524 115730949 + 0 NA Intergenic Intergenic 1270 ENSMUSG00000084130.1 ENSMUSG00000084130 ENSMUST00000120031 Gm11704 processed_pseudogene Interval_159414 chr8 94447763 94448011 + 0 NA intron (ENSMUSG00000074151.13, intron 2 of 2) protein_coding-intron (ENSMUSG00000074151.13, intron 2 of 52) 13531 ENSMUSG00000074151.13 ENSMUSG00000074151 ENSMUST00000137032 Nlrc5 protein_coding Interval_150668 chr7 113197329 113198102 + 0 NA Intergenic Intergenic -36908 ENSMUSG00000055116.8 ENSMUSG00000055116 ENSMUST00000211547 Arntl protein_coding Interval_89997 chr2 27209779 27211097 + 0 NA promoter-TSS (ENSMUSG00000009614.16) protein_coding-promoter-TSS (ENSMUSG00000009614.16) -501 ENSMUSG00000009614.16 ENSMUSG00000009614 ENSMUST00000129975 Sardh protein_coding Interval_130017 chr5 123720383 123721428 + 0 NA promoter-TSS (ENSMUSG00000029427.11) protein_coding-promoter-TSS (ENSMUSG00000029427.11) -131 ENSMUSG00000029427.11 ENSMUSG00000029427 ENSMUST00000200503 Zcchc8 protein_coding Interval_127738 chr5 107225418 107226244 + 0 NA intron (ENSMUSG00000029287.14, intron 2 of 6) protein_coding-intron (ENSMUSG00000029287.14, intron 2 of 16) -15792 ENSMUSG00000084218.1 ENSMUSG00000084218 ENSMUST00000118220 Gm8145 processed_pseudogene Interval_4170 chr1 71102245 71103886 + 0 NA promoter-TSS (ENSMUSG00000026196.7) protein_coding-promoter-TSS (ENSMUSG00000026196.7) 81 ENSMUSG00000026196.7 ENSMUSG00000026196 ENSMUST00000027393 Bard1 protein_coding Interval_2544 chr1 40101411 40102422 + 0 NA intron (ENSMUSG00000026073.13, intron 1 of 1) protein_coding-intron (ENSMUSG00000026073.13, intron 1 of 8) 13405 ENSMUSG00000102975.1 ENSMUSG00000102975 ENSMUST00000193969 Gm37347 TEC Interval_19305 chr10 96450034 96450225 + 0 NA Intergenic Intergenic -26350 ENSMUSG00000097939.1 ENSMUSG00000097939 ENSMUST00000182096 Gm8601 processed_pseudogene Interval_34808 chr12 11436299 11438477 + 0 NA promoter-TSS (ENSMUSG00000054459.8) protein_coding-promoter-TSS (ENSMUSG00000054459.8) -839 ENSMUSG00000097841.2 ENSMUSG00000097841 ENSMUST00000181268 4930511A02Rik lincRNA Interval_2448 chr1 39429193 39431153 + 0 NA intron (ENSMUSG00000003134.10, intron 1 of 18) protein_coding-intron (ENSMUSG00000003134.10, intron 1 of 19) -10241 ENSMUSG00000102607.1 ENSMUSG00000102607 ENSMUST00000191698 Gm37265 TEC Interval_97947 chr2 146045387 146045617 + 0 NA promoter-TSS (ENSMUSG00000037143.17) protein_coding-promoter-TSS (ENSMUSG00000037143.17) -110788 ENSMUSG00000001767.5 ENSMUSG00000001767 ENSMUST00000147904 Crnkl1 protein_coding Interval_166994 chr9 64369901 64370313 + 0 NA Intergenic Intergenic -15519 ENSMUSG00000036466.17 ENSMUSG00000036466 ENSMUST00000153934 Megf11 protein_coding Interval_91309 chr2 37649720 37650169 + 0 NA intron (ENSMUSG00000026915.16, intron 1 of 3) protein_coding-intron (ENSMUSG00000026915.16, intron 1 of 17) -9202 ENSMUSG00000108226.1 ENSMUSG00000108226 ENSMUST00000203307 Gm44063 processed_pseudogene Interval_59451 chr15 53252275 53252858 + 0 NA intron (ENSMUSG00000061731.9, intron 1 of 10) protein_coding-intron (ENSMUSG00000061731.9, intron 1 of 10) -131353 ENSMUSG00000087805.2 ENSMUSG00000087805 ENSMUST00000157180 Gm27926 snRNA Interval_23967 chr11 28974933 28975321 + 0 NA Intergenic Intergenic 18403 ENSMUSG00000081695.1 ENSMUSG00000081695 ENSMUST00000121462 Rpsa-ps5 processed_pseudogene Interval_172056 chr9 124117327 124119455 + 0 NA Intergenic Intergenic -8293 ENSMUSG00000079227.10 ENSMUSG00000079227 ENSMUST00000097855 Ccr5 protein_coding Interval_161160 chr8 117898147 117898399 + 0 NA Intergenic Intergenic 96211 ENSMUSG00000074065.4 ENSMUSG00000074065 ENSMUST00000098368 Gm10617 pseudogene Interval_149325 chr7 97447408 97447750 + 0 NA Intergenic Intergenic -3744 ENSMUSG00000051727.14 ENSMUSG00000051727 ENSMUST00000206279 Kctd14 protein_coding Interval_59354 chr15 51834044 51835212 + 0 NA intron (ENSMUSG00000022312.11, intron 2 of 2) protein_coding-intron (ENSMUSG00000022312.11, intron 2 of 7) 1629 ENSMUSG00000022312.11 ENSMUSG00000022312 ENSMUST00000228583 Eif3h protein_coding Interval_63380 chr15 100713009 100714673 + 0 NA intron (ENSMUSG00000037280.12, intron 4 of 11) protein_coding-intron (ENSMUSG00000037280.12, intron 4 of 11) 6636 ENSMUSG00000037280.12 ENSMUSG00000037280 ENSMUST00000161514 Galnt6 protein_coding Interval_78199 chr18 10081136 10081812 + 0 NA intron (ENSMUSG00000024290.9, intron 24 of 32) protein_coding-intron (ENSMUSG00000024290.9, intron 25 of 32) 30904 ENSMUSG00000024290.9 ENSMUSG00000024290 ENSMUST00000235075 Rock1 protein_coding Interval_74669 chr17 55810768 55810988 + 0 NA intron (ENSMUSG00000032915.6, intron 11 of 16) protein_coding-intron (ENSMUSG00000032915.6, intron 11 of 16) 40251 ENSMUSG00000093740.1 ENSMUSG00000093740 ENSMUST00000176564 Gm18417 unprocessed_pseudogene Interval_119573 chr4 138447394 138447840 + 0 NA Intergenic Intergenic -6697 ENSMUSG00000046447.3 ENSMUSG00000046447 ENSMUST00000050918 Camk2n1 protein_coding Interval_154658 chr8 22407972 22408539 + 0 NA TTS (ENSMUSG00000109938.1) processed_pseudogene-TTS (ENSMUSG00000109938.1) 713 ENSMUSG00000109938.1 ENSMUSG00000109938 ENSMUST00000210848 Gm6009 processed_pseudogene Interval_18492 chr10 86704851 86706570 + 0 NA promoter-TSS (ENSMUSG00000020048.13) protein_coding-promoter-TSS (ENSMUSG00000020048.13) -262 ENSMUSG00000092686.1 ENSMUSG00000092686 ENSMUST00000174945 Gm25745 miRNA Interval_18713 chr10 89621219 89621727 + 0 NA promoter-TSS (ENSMUSG00000019935.16) protein_coding-promoter-TSS (ENSMUSG00000019935.16) -21658 ENSMUSG00000019935.16 ENSMUSG00000019935 ENSMUST00000105295 Slc17a8 protein_coding Interval_12294 chr1 191484489 191484673 + 0 NA Intergenic Intergenic 7250 ENSMUSG00000104341.1 ENSMUSG00000104341 ENSMUST00000195195 Gm37688 processed_pseudogene Interval_169288 chr9 96167081 96167837 + 0 NA intron (ENSMUSG00000041440.18, intron 10 of 15) protein_coding-intron (ENSMUSG00000041440.18, intron 11 of 15) -3457 ENSMUSG00000041440.18 ENSMUSG00000041440 ENSMUST00000189249 Gk5 protein_coding Interval_162605 chr9 6289357 6289630 + 0 NA intron (ENSMUSG00000032006.15, intron 2 of 5) protein_coding-intron (ENSMUSG00000032006.15, intron 2 of 6) -19647 ENSMUSG00000047619.5 ENSMUSG00000047619 ENSMUST00000051706 Ddi1 protein_coding Interval_150725 chr7 113855044 113855429 + 0 NA intron (ENSMUSG00000038156.16, intron 3 of 5) protein_coding-intron (ENSMUSG00000038156.16, intron 3 of 15) 89062 ENSMUSG00000038156.16 ENSMUSG00000038156 ENSMUST00000084696 Spon1 protein_coding Interval_43805 chr13 36724225 36725341 + 0 NA TTS (ENSMUSG00000039114.16) protein_coding-TTS (ENSMUSG00000039114.16) -2475 ENSMUSG00000114708.1 ENSMUSG00000114708 ENSMUST00000223623 Gm30177 antisense Interval_154122 chr8 12891132 12891713 + 0 NA intron (ENSMUSG00000031442.21, intron 2 of 29) protein_coding-intron (ENSMUSG00000031442.21, intron 2 of 29) -7706 ENSMUSG00000079146.2 ENSMUSG00000079146 ENSMUST00000149938 Gm15353 antisense Interval_45516 chr13 55598913 55600874 + 0 NA promoter-TSS (ENSMUSG00000021504.14) protein_coding-promoter-TSS (ENSMUSG00000021504.14) -172 ENSMUSG00000021504.14 ENSMUSG00000021504 ENSMUST00000064701 B4galt7 protein_coding Interval_37468 chr12 69177316 69178023 + 0 NA intron (ENSMUSG00000034883.9, intron 3 of 3) protein_coding-intron (ENSMUSG00000034883.9, intron 3 of 3) 6317 ENSMUSG00000049751.6 ENSMUSG00000049751 ENSMUST00000054544 Rpl36al protein_coding Interval_22525 chr11 11484230 11484679 + 0 NA intron (ENSMUSG00000020191.11, intron 2 of 8) protein_coding-intron (ENSMUSG00000020191.11, intron 2 of 8) -22046 ENSMUSG00000020193.3 ENSMUSG00000020193 ENSMUST00000020413 Zpbp protein_coding Interval_174691 chrX 163203487 163204050 + 0 NA Intergenic Intergenic 5032 ENSMUSG00000083225.1 ENSMUSG00000083225 ENSMUST00000117773 Gm15215 processed_pseudogene Interval_111920 chr4 32554892 32555129 + 0 NA intron (ENSMUSG00000040270.16, intron 2 of 4) protein_coding-intron (ENSMUSG00000040270.16, intron 4 of 7) 16698 ENSMUSG00000086150.1 ENSMUSG00000086150 ENSMUST00000149084 Bach2os antisense Interval_89910 chr2 26397286 26397619 + 0 NA TTS (ENSMUSG00000026926.14) protein_coding-TTS (ENSMUSG00000026926.14) 3024 ENSMUSG00000026925.16 ENSMUSG00000026925 ENSMUST00000144011 Inpp5e protein_coding Interval_99937 chr2 166008691 166010612 + 0 NA intron (ENSMUSG00000027678.17, intron 1 of 22) protein_coding-intron (ENSMUSG00000027678.17, intron 1 of 22) -17134 ENSMUSG00000087351.1 ENSMUSG00000087351 ENSMUST00000146963 Gm11464 lincRNA Interval_145604 chr7 35901811 35903113 + 0 NA Intergenic Intergenic 64202 ENSMUSG00000100387.1 ENSMUSG00000100387 ENSMUST00000187488 Gm28514 lincRNA Interval_166742 chr9 62363189 62363841 + 0 NA intron (ENSMUSG00000032249.14, intron 1 of 4) protein_coding-intron (ENSMUSG00000032249.14, intron 1 of 6) 21051 ENSMUSG00000032249.14 ENSMUSG00000032249 ENSMUST00000145679 Anp32a protein_coding Interval_59976 chr15 62500818 62501152 + 0 NA Intergenic Intergenic -66990 ENSMUSG00000115862.1 ENSMUSG00000115862 ENSMUST00000230029 Gm41333 lincRNA Interval_114584 chr4 82743902 82744696 + 0 NA Intergenic Intergenic -38549 ENSMUSG00000008575.17 ENSMUSG00000008575 ENSMUST00000152588 Nfib protein_coding Interval_68319 chr16 73023852 73024538 + 0 NA exon (ENSMUSG00000022883.11, exon 25 of 29) protein_coding-exon (ENSMUSG00000022883.11, exon 25 of 29) 47846 ENSMUSG00000022883.11 ENSMUSG00000022883 ENSMUST00000232432 Robo1 protein_coding Interval_170219 chr9 106273185 106274325 + 0 NA Intergenic Intergenic -7855 ENSMUSG00000023345.17 ENSMUSG00000023345 ENSMUST00000186366 Poc1a protein_coding Interval_54819 chr14 75474802 75475095 + 0 NA intron (ENSMUSG00000091722.2, intron 1 of 1) protein_coding-intron (ENSMUSG00000091722.2, intron 1 of 1) 18966 ENSMUSG00000091722.2 ENSMUSG00000091722 ENSMUST00000164848 Siah3 protein_coding Interval_82224 chr18 69384192 69384922 + 0 NA intron (ENSMUSG00000053477.17, intron 1 of 6) protein_coding-intron (ENSMUSG00000053477.17, intron 3 of 20) 128269 ENSMUSG00000098060.1 ENSMUSG00000098060 ENSMUST00000183237 Gm4842 processed_pseudogene Interval_22528 chr11 11500079 11500587 + 0 NA intron (ENSMUSG00000020191.11, intron 4 of 5) protein_coding-intron (ENSMUSG00000020191.11, intron 7 of 8) -37925 ENSMUSG00000020193.3 ENSMUSG00000020193 ENSMUST00000020413 Zpbp protein_coding Interval_154433 chr8 16697595 16697883 + 0 NA intron (ENSMUSG00000060924.15, intron 5 of 10) protein_coding-intron (ENSMUSG00000060924.15, intron 5 of 69) -53580 ENSMUSG00000110132.1 ENSMUSG00000110132 ENSMUST00000209240 Gm45394 TEC Interval_130574 chr5 128970682 128971793 + 0 NA Intergenic Intergenic 37309 ENSMUSG00000029428.13 ENSMUSG00000029428 ENSMUST00000199813 Stx2 protein_coding Interval_43994 chr13 38832318 38833776 + 0 NA intron (ENSMUSG00000114767.1, intron 3 of 3) lincRNA-intron (ENSMUSG00000114767.1, intron 3 of 3) -7292 ENSMUSG00000114319.1 ENSMUSG00000114319 ENSMUST00000225304 Gm47509 lincRNA Interval_83399 chr18 84904176 84905156 + 0 NA Intergenic Intergenic -30362 ENSMUSG00000034391.12 ENSMUSG00000034391 ENSMUST00000225015 Fbxo15 protein_coding Interval_166511 chr9 60259121 60259725 + 0 NA intron (ENSMUSG00000032289.15, intron 5 of 16) protein_coding-intron (ENSMUSG00000032289.15, intron 6 of 17) -74719 ENSMUSG00000111296.1 ENSMUSG00000111296 ENSMUST00000214235 2010001M07Rik antisense Interval_101621 chr3 7999782 8001641 + 0 NA Intergenic Intergenic -45829 ENSMUSG00000100010.5 ENSMUSG00000100010 ENSMUST00000187729 1700010I02Rik lincRNA Interval_90352 chr2 29930381 29930664 + 0 NA TTS (ENSMUSG00000088348.1) snRNA-TTS (ENSMUSG00000088348.1) 1001 ENSMUSG00000088348.1 ENSMUSG00000088348 ENSMUST00000157723 Gm23865 snRNA Interval_151496 chr7 123083962 123085402 + 0 NA intron (ENSMUSG00000110230.1, intron 2 of 2) lincRNA-intron (ENSMUSG00000110230.1, intron 2 of 2) 53267 ENSMUSG00000109814.1 ENSMUSG00000109814 ENSMUST00000209402 Gm45847 lincRNA Interval_93032 chr2 69674405 69674714 + 0 NA intron (ENSMUSG00000075307.3, intron 2 of 5) protein_coding-intron (ENSMUSG00000075307.3, intron 2 of 5) 4439 ENSMUSG00000075307.3 ENSMUSG00000075307 ENSMUST00000100050 Klhl41 protein_coding Interval_75434 chr17 66531743 66532041 + 0 NA promoter-TSS (ENSMUSG00000117235.1) lincRNA-promoter-TSS (ENSMUSG00000117235.1) -211 ENSMUSG00000117235.1 ENSMUSG00000117235 ENSMUST00000233785 Gm49938 lincRNA Interval_144965 chr7 29145707 29145940 + 0 NA exon (ENSMUSG00000030589.15, exon 9 of 17) protein_coding-exon (ENSMUSG00000030589.15, exon 9 of 17) -5511 ENSMUSG00000090009.1 ENSMUSG00000090009 ENSMUST00000162641 Gm16282 antisense Interval_29560 chr11 84914461 84914840 + 0 NA TTS (ENSMUSG00000020526.12) protein_coding-TTS (ENSMUSG00000020526.12) 1674 ENSMUSG00000020526.12 ENSMUSG00000020526 ENSMUST00000156046 Znhit3 protein_coding Interval_25568 chr11 49820851 49821208 + 0 NA intron (ENSMUSG00000020363.6, intron 9 of 18) protein_coding-intron (ENSMUSG00000020363.6, intron 9 of 18) -25722 ENSMUSG00000020366.18 ENSMUSG00000020366 ENSMUST00000043321 Mapk9 protein_coding Interval_39916 chr12 99745331 99745638 + 0 NA intron (ENSMUSG00000021176.6, intron 6 of 6) protein_coding-intron (ENSMUSG00000021176.6, intron 5 of 5) 16770 ENSMUSG00000113877.1 ENSMUSG00000113877 ENSMUST00000220762 Gm47208 TEC Interval_109903 chr3 150506179 150506377 + 0 NA Intergenic Intergenic 9803 ENSMUSG00000105779.1 ENSMUSG00000105779 ENSMUST00000199849 Gm6439 processed_pseudogene Interval_110704 chr4 6609497 6610001 + 0 NA Intergenic Intergenic 24546 ENSMUSG00000077302.1 ENSMUSG00000077302 ENSMUST00000104114 Gm22473 snoRNA Interval_67408 chr16 48392221 48392673 + 0 NA Intergenic Intergenic 17977 ENSMUSG00000064932.1 ENSMUSG00000064932 ENSMUST00000082998 n-R5s36 rRNA Interval_97967 chr2 146247560 146248549 + 0 NA TTS (ENSMUSG00000037110.20) protein_coding-TTS (ENSMUSG00000037110.20) -11232 ENSMUSG00000085958.1 ENSMUSG00000085958 ENSMUST00000135360 A930019D19Rik antisense Interval_82373 chr18 73273694 73274087 + 0 NA Intergenic Intergenic 259660 ENSMUSG00000065922.1 ENSMUSG00000065922 ENSMUST00000083988 n-R5-8s1 rRNA Interval_144591 chr7 26679277 26679567 + 0 NA exon (ENSMUSG00000040650.8, exon 4 of 9) protein_coding-exon (ENSMUSG00000040650.8, exon 4 of 9) 7015 ENSMUSG00000040650.8 ENSMUSG00000040650 ENSMUST00000077356 Cyp2b23 protein_coding Interval_142011 chr6 136541374 136541668 + 0 NA intron (ENSMUSG00000030213.12, intron 1 of 8) protein_coding-intron (ENSMUSG00000030213.12, intron 1 of 14) -22490 ENSMUSG00000107702.1 ENSMUSG00000107702 ENSMUST00000204157 Gm44140 bidirectional_promoter_lncRNA Interval_73934 chr17 45557285 45557540 + 0 NA intron (ENSMUSG00000023947.8, intron 1 of 5) protein_coding-intron (ENSMUSG00000023947.8, intron 1 of 5) 1701 ENSMUSG00000023947.8 ENSMUSG00000023947 ENSMUST00000233379 Nfkbie protein_coding Interval_95038 chr2 103390370 103390582 + 0 NA Intergenic Intergenic -1434 ENSMUSG00000070794.11 ENSMUSG00000070794 ENSMUST00000153797 BC016548 lincRNA Interval_108237 chr3 122833953 122834629 + 0 NA intron (ENSMUSG00000053965.10, intron 14 of 20) protein_coding-intron (ENSMUSG00000053965.10, intron 14 of 20) -27622 ENSMUSG00000106059.1 ENSMUSG00000106059 ENSMUST00000199220 Gm9364 processed_pseudogene Interval_120572 chr4 149448558 149448772 + 0 NA Intergenic Intergenic 4759 ENSMUSG00000028996.9 ENSMUSG00000028996 ENSMUST00000132103 Rbp7 protein_coding Interval_100188 chr2 167543227 167544213 + 0 NA TTS (ENSMUSG00000042821.7) protein_coding-TTS (ENSMUSG00000042821.7) 5525 ENSMUSG00000042821.7 ENSMUSG00000042821 ENSMUST00000052631 Snai1 protein_coding Interval_39395 chr12 87137573 87138856 + 0 NA intron (ENSMUSG00000034126.5, intron 2 of 19) protein_coding-intron (ENSMUSG00000034126.5, intron 2 of 20) -8951 ENSMUSG00000021033.11 ENSMUSG00000021033 ENSMUST00000222222 Gstz1 protein_coding Interval_100513 chr2 169781676 169782399 + 0 NA intron (ENSMUSG00000047907.11, intron 1 of 2) protein_coding-intron (ENSMUSG00000047907.11, intron 1 of 1) -102856 ENSMUSG00000047907.11 ENSMUSG00000047907 ENSMUST00000140699 Tshz2 protein_coding Interval_111573 chr4 23641822 23642021 + 0 NA Intergenic Intergenic -15176 ENSMUSG00000089323.1 ENSMUSG00000089323 ENSMUST00000158698 Gm25978 miRNA Interval_101220 chr2 179565509 179566089 + 0 NA intron (ENSMUSG00000000305.12, intron 2 of 2) protein_coding-intron (ENSMUSG00000000305.12, intron 2 of 15) 47768 ENSMUSG00000083410.1 ENSMUSG00000083410 ENSMUST00000120800 Gm14300 processed_pseudogene Interval_68665 chr16 84135320 84136019 + 0 NA Intergenic Intergenic -78285 ENSMUSG00000116745.1 ENSMUSG00000116745 ENSMUST00000231610 Gm41481 lincRNA Interval_65909 chr16 30170740 30172359 + 0 NA Intergenic Intergenic -23522 ENSMUSG00000101888.1 ENSMUSG00000101888 ENSMUST00000187479 1700025H01Rik lincRNA Interval_99904 chr2 165726955 165728240 + 0 NA intron (ENSMUSG00000017897.18, intron 3 of 6) protein_coding-intron (ENSMUSG00000017897.18, intron 8 of 15) -60740 ENSMUSG00000081758.1 ENSMUSG00000081758 ENSMUST00000118200 Gm11460 processed_pseudogene Interval_62793 chr15 97027649 97028782 + 0 NA intron (ENSMUSG00000022464.14, intron 1 of 15) protein_coding-intron (ENSMUSG00000022464.14, intron 1 of 15) -8264 ENSMUSG00000022464.14 ENSMUSG00000022464 ENSMUST00000230907 Slc38a4 protein_coding Interval_5316 chr1 87494843 87495242 + 0 NA intron (ENSMUSG00000026259.14, intron 5 of 14) protein_coding-intron (ENSMUSG00000026259.14, intron 3 of 12) -8865 ENSMUSG00000026259.14 ENSMUSG00000026259 ENSMUST00000166463 Ngef protein_coding Interval_161754 chr8 122564793 122565237 + 0 NA intron (ENSMUSG00000092329.1, intron 1 of 15) protein_coding-intron (ENSMUSG00000092329.1, intron 1 of 15) -3011 ENSMUSG00000006585.3 ENSMUSG00000006585 ENSMUST00000212821 Cdt1 protein_coding Interval_59737 chr15 58971889 58972262 + 0 NA intron (ENSMUSG00000022353.10, intron 2 of 7) protein_coding-intron (ENSMUSG00000022353.10, intron 4 of 14) -12061 ENSMUSG00000115062.1 ENSMUSG00000115062 ENSMUST00000226216 4930544F09Rik antisense Interval_30615 chr11 95497046 95498191 + 0 NA Intergenic Intergenic 16952 ENSMUSG00000046719.7 ENSMUSG00000046719 ENSMUST00000058866 Nxph3 protein_coding Interval_49753 chr13 114523244 114523704 + 0 NA Intergenic Intergenic -57021 ENSMUSG00000093072.1 ENSMUSG00000093072 ENSMUST00000175331 Gm25950 miRNA Interval_119355 chr4 137104761 137105938 + 0 NA Intergenic Intergenic 12233 ENSMUSG00000085542.1 ENSMUSG00000085542 ENSMUST00000132824 1700037C06Rik lincRNA Interval_6404 chr1 107228794 107229061 + 0 NA intron (ENSMUSG00000073602.10, intron 1 of 7) protein_coding-intron (ENSMUSG00000073602.10, intron 1 of 7) 25363 ENSMUSG00000081114.1 ENSMUSG00000081114 ENSMUST00000120323 Gm15390 processed_pseudogene Interval_38570 chr12 80179821 80180517 + 0 NA intron (ENSMUSG00000015143.15, intron 11 of 20) protein_coding-intron (ENSMUSG00000015143.15, intron 11 of 20) 11259 ENSMUSG00000112830.1 ENSMUSG00000112830 ENSMUST00000220316 Gm47765 processed_transcript Interval_62730 chr15 96507196 96507900 + 0 NA Intergenic Intergenic 9646 ENSMUSG00000116160.1 ENSMUSG00000116160 ENSMUST00000229356 Gm41392 lincRNA Interval_64174 chr16 8838187 8839708 + 0 NA intron (ENSMUSG00000022507.6, intron 1 of 1) protein_coding-intron (ENSMUSG00000022507.6, intron 2 of 3) 7626 ENSMUSG00000022507.6 ENSMUSG00000022507 ENSMUST00000229318 1810013L24Rik protein_coding Interval_71791 chr17 26113033 26114324 + 0 NA intron (ENSMUSG00000024180.14, intron 1 of 11) protein_coding-intron (ENSMUSG00000024180.14, intron 1 of 12) 335 ENSMUSG00000024180.14 ENSMUSG00000024180 ENSMUST00000236047 Tmem8 protein_coding Interval_92124 chr2 53484481 53484771 + 0 NA Intergenic Intergenic -67300 ENSMUSG00000080716.1 ENSMUSG00000080716 ENSMUST00000119017 Gm13503 processed_pseudogene Interval_17842 chr10 80348218 80349156 + 0 NA promoter-TSS (ENSMUSG00000043822.18) protein_coding-promoter-TSS (ENSMUSG00000043822.18) -3449 ENSMUSG00000043822.18 ENSMUSG00000043822 ENSMUST00000138705 Adamtsl5 protein_coding Interval_173155 chrX 73644902 73645903 + 0 NA Intergenic Intergenic 5983 ENSMUSG00000031383.8 ENSMUSG00000031383 ENSMUST00000019701 Dusp9 protein_coding Interval_152550 chr7 134261272 134261597 + 0 NA Intergenic Intergenic -29303 ENSMUSG00000054555.11 ENSMUSG00000054555 ENSMUST00000154144 Adam12 protein_coding Interval_156618 chr8 54778893 54780627 + 0 NA intron (ENSMUSG00000039375.16, intron 2 of 4) protein_coding-intron (ENSMUSG00000039375.16, intron 2 of 4) 70725 ENSMUSG00000089719.1 ENSMUSG00000089719 ENSMUST00000162822 Gm15758 processed_transcript Interval_91023 chr2 34480228 34481514 + 0 NA intron (ENSMUSG00000038696.14, intron 2 of 2) protein_coding-intron (ENSMUSG00000038696.14, intron 3 of 10) -44289 ENSMUSG00000083233.1 ENSMUSG00000083233 ENSMUST00000121991 Gm13406 processed_pseudogene Interval_57118 chr15 6663875 6664726 + 0 NA TTS (ENSMUSG00000022148.16) protein_coding-TTS (ENSMUSG00000022148.16) 10377 ENSMUSG00000067547.6 ENSMUSG00000067547 ENSMUST00000146631 Gm7666 transcribed_processed_pseudogene Interval_59652 chr15 57588767 57589339 + 0 NA Intergenic Intergenic -100182 ENSMUSG00000115629.1 ENSMUSG00000115629 ENSMUST00000227877 Gm49235 processed_pseudogene Interval_128835 chr5 115520537 115521067 + 0 NA intron (ENSMUSG00000029528.19, intron 1 of 10) protein_coding-intron (ENSMUSG00000029528.19, intron 1 of 10) 5539 ENSMUSG00000086849.1 ENSMUSG00000086849 ENSMUST00000149608 Gm13840 sense_intronic Interval_53226 chr14 55340095 55340546 + 0 NA Intergenic Intergenic 10370 ENSMUSG00000115125.1 ENSMUSG00000115125 ENSMUST00000227916 Gm6852 processed_pseudogene Interval_53905 chr14 63247517 63247852 + 0 NA intron (ENSMUSG00000021944.15, intron 1 of 1) protein_coding-intron (ENSMUSG00000021944.15, intron 1 of 1) 23440 ENSMUSG00000021944.15 ENSMUSG00000021944 ENSMUST00000156782 Gata4 protein_coding Interval_5493 chr1 89234839 89236231 + 0 NA Intergenic Intergenic 21446 ENSMUSG00000102083.1 ENSMUSG00000102083 ENSMUST00000191231 Gm5259 processed_pseudogene Interval_46214 chr13 62569128 62571547 + 0 NA intron (ENSMUSG00000074865.11, intron 1 of 1) protein_coding-intron (ENSMUSG00000074865.11, intron 1 of 1) -11742 ENSMUSG00000074865.11 ENSMUSG00000074865 ENSMUST00000221279 Zfp934 protein_coding Interval_13576 chr10 19895448 19895745 + 0 NA intron (ENSMUSG00000020003.16, intron 3 of 9) protein_coding-intron (ENSMUSG00000020003.16, intron 3 of 9) 12055 ENSMUSG00000020003.16 ENSMUSG00000020003 ENSMUST00000214951 Pex7 protein_coding Interval_712 chr1 10089386 10089985 + 0 NA intron (ENSMUSG00000056763.16, intron 6 of 6) protein_coding-intron (ENSMUSG00000056763.16, intron 14 of 29) -31741 ENSMUSG00000102356.1 ENSMUSG00000102356 ENSMUST00000194474 1700047N06Rik TEC Interval_13359 chr10 17137118 17137629 + 0 NA Intergenic Intergenic 20569 ENSMUSG00000088436.1 ENSMUSG00000088436 ENSMUST00000157811 Gm25382 snRNA Interval_104917 chr3 78987918 78988546 + 0 NA Intergenic Intergenic 8310 ENSMUSG00000077487.1 ENSMUSG00000077487 ENSMUST00000104299 Gm23440 snoRNA Interval_19878 chr10 110809780 110810552 + 0 NA intron (ENSMUSG00000101801.6, intron 2 of 2) antisense-intron (ENSMUSG00000101801.6, intron 2 of 2) 13993 ENSMUSG00000089461.1 ENSMUSG00000089461 ENSMUST00000158836 Gm23698 snoRNA Interval_44895 chr13 49449107 49449917 + 0 NA intron (ENSMUSG00000021385.10, intron 11 of 13) protein_coding-intron (ENSMUSG00000021385.10, intron 10 of 12) 28234 ENSMUSG00000021385.10 ENSMUSG00000021385 ENSMUST00000021817 Ippk protein_coding Interval_127132 chr5 100498276 100498892 + 0 NA promoter-TSS (ENSMUSG00000035310.15) protein_coding-promoter-TSS (ENSMUSG00000035310.15) 49 ENSMUSG00000035310.15 ENSMUSG00000035310 ENSMUST00000144716 Lin54 protein_coding Interval_71632 chr17 24997572 24998069 + 0 NA intron (ENSMUSG00000038002.9, intron 3 of 20) protein_coding-intron (ENSMUSG00000038002.9, intron 3 of 20) 17968 ENSMUSG00000038002.9 ENSMUSG00000038002 ENSMUST00000233169 Cramp1l protein_coding Interval_164132 chr9 31849579 31849797 + 0 NA intron (ENSMUSG00000032033.11, intron 3 of 3) protein_coding-intron (ENSMUSG00000032033.11, intron 3 of 3) -56305 ENSMUSG00000110813.1 ENSMUSG00000110813 ENSMUST00000216981 Gm31497 antisense Interval_146029 chr7 43312480 43313922 + 0 NA promoter-TSS (ENSMUSG00000012640.16) protein_coding-promoter-TSS (ENSMUSG00000012640.16) 93 ENSMUSG00000012640.16 ENSMUSG00000012640 ENSMUST00000135130 Zfp715 protein_coding Interval_107388 chr3 107201154 107201760 + 0 NA Intergenic Intergenic 18313 ENSMUSG00000042861.7 ENSMUSG00000042861 ENSMUST00000169751 Kcna10 protein_coding Interval_98175 chr2 149327110 149327360 + 0 NA Intergenic Intergenic 7554 ENSMUSG00000081314.1 ENSMUSG00000081314 ENSMUST00000117188 Gm14132 processed_pseudogene Interval_68762 chr16 85701630 85701946 + 0 NA Intergenic Intergenic 57536 ENSMUSG00000116972.1 ENSMUSG00000116972 ENSMUST00000231765 Gm6278 processed_pseudogene Interval_170233 chr9 106350918 106352469 + 0 NA Intergenic Intergenic -15860 ENSMUSG00000099879.1 ENSMUSG00000099879 ENSMUST00000185808 Gm29123 antisense Interval_12589 chr10 3652343 3652701 + 0 NA Intergenic Intergenic 112234 ENSMUSG00000019762.4 ENSMUSG00000019762 ENSMUST00000141745 Iyd protein_coding Interval_161137 chr8 117715884 117716107 + 0 NA intron (ENSMUSG00000031844.8, intron 1 of 4) protein_coding-intron (ENSMUSG00000031844.8, intron 1 of 4) 3425 ENSMUSG00000110520.1 ENSMUSG00000110520 ENSMUST00000212366 Gm45776 TEC Interval_172430 chrX 19341295 19342346 + 0 NA Intergenic Intergenic -13181 ENSMUSG00000077277.1 ENSMUSG00000077277 ENSMUST00000104089 Gm22783 snRNA Interval_24396 chr11 32956752 32957317 + 0 NA Intergenic Intergenic 27265 ENSMUSG00000077836.2 ENSMUSG00000077836 ENSMUST00000104646 Gm26052 miRNA Interval_110684 chr4 6427372 6428367 + 0 NA TTS (ENSMUSG00000028245.15) protein_coding-TTS (ENSMUSG00000028245.15) 26227 ENSMUSG00000028245.15 ENSMUSG00000028245 ENSMUST00000124656 Nsmaf protein_coding Interval_40218 chr12 102607063 102608046 + 0 NA intron (ENSMUSG00000057963.9, intron 2 of 4) protein_coding-intron (ENSMUSG00000057963.9, intron 3 of 9) -5126 ENSMUSG00000095174.1 ENSMUSG00000095174 ENSMUST00000178938 Gm20069 antisense Interval_147066 chr7 60500897 60502007 + 0 NA Intergenic Intergenic -142439 ENSMUSG00000109447.1 ENSMUSG00000109447 ENSMUST00000208725 Gm3198 processed_pseudogene Interval_167426 chr9 69068394 69068946 + 0 NA intron (ENSMUSG00000032238.17, intron 1 of 5) protein_coding-intron (ENSMUSG00000032238.17, intron 1 of 10) 295577 ENSMUSG00000086648.1 ENSMUSG00000086648 ENSMUST00000152570 Gm15511 antisense Interval_129468 chr5 120398127 120398322 + 0 NA Intergenic Intergenic -33475 ENSMUSG00000029595.9 ENSMUSG00000029595 ENSMUST00000031591 Lhx5 protein_coding Interval_35328 chr12 20676351 20676541 + 0 NA Intergenic Intergenic 10105 ENSMUSG00000116635.1 ENSMUSG00000116635 ENSMUST00000232444 Gm49699 transcribed_unprocessed_pseudogene Interval_639 chr1 9358509 9358913 + 0 NA Intergenic Intergenic 39976 ENSMUSG00000101571.2 ENSMUSG00000101571 ENSMUST00000040649 Gm6187 processed_pseudogene Interval_148942 chr7 90213141 90213988 + 0 NA TTS (ENSMUSG00000039361.11) protein_coding-TTS (ENSMUSG00000039361.11) 12286 ENSMUSG00000109279.1 ENSMUSG00000109279 ENSMUST00000207847 Gm45220 TEC Interval_63991 chr16 5088189 5089622 + 0 NA exon (ENSMUSG00000039457.4, exon 22 of 22) protein_coding-exon (ENSMUSG00000039457.4, exon 22 of 22) -28023 ENSMUSG00000077367.1 ENSMUSG00000077367 ENSMUST00000104179 Gm23483 snRNA Interval_6920 chr1 120697860 120699123 + 0 NA Intergenic Intergenic -59952 ENSMUSG00000101386.1 ENSMUSG00000101386 ENSMUST00000188147 Gm29346 lincRNA Interval_163296 chr9 20665761 20667595 + 0 NA TTS (ENSMUSG00000032171.7) protein_coding-TTS (ENSMUSG00000032171.7) 14583 ENSMUSG00000032171.7 ENSMUSG00000032171 ENSMUST00000034689 Pin1 protein_coding Interval_77660 chr17 93728329 93728861 + 0 NA Intergenic Intergenic -47561 ENSMUSG00000117537.1 ENSMUSG00000117537 ENSMUST00000234228 Gm50003 processed_pseudogene Interval_1497 chr1 24171621 24172041 + 0 NA Intergenic Intergenic 46556 ENSMUSG00000097670.1 ENSMUSG00000097670 ENSMUST00000180661 Gm26607 processed_pseudogene Interval_105778 chr3 89279183 89282393 + 0 NA intron (ENSMUSG00000027954.9, intron 1 of 4) protein_coding-intron (ENSMUSG00000027954.9, intron 1 of 4) -1147 ENSMUSG00000027954.9 ENSMUSG00000027954 ENSMUST00000118860 Efna1 protein_coding Interval_80003 chr18 36574507 36574737 + 0 NA intron (ENSMUSG00000024483.19, intron 1 of 33) protein_coding-intron (ENSMUSG00000024483.19, intron 1 of 33) -35336 ENSMUSG00000085172.1 ENSMUSG00000085172 ENSMUST00000153606 Gm6542 processed_pseudogene Interval_169312 chr9 96330587 96332183 + 0 NA Intergenic Intergenic 12196 ENSMUSG00000032412.8 ENSMUSG00000032412 ENSMUST00000187341 Atp1b3 protein_coding Interval_36649 chr12 51748954 51749864 + 0 NA intron (ENSMUSG00000035247.16, intron 37 of 42) protein_coding-intron (ENSMUSG00000035247.16, intron 37 of 42) -9067 ENSMUSG00000089346.1 ENSMUSG00000089346 ENSMUST00000158721 Gm22663 snRNA Interval_77089 chr17 86448037 86448269 + 0 NA intron (ENSMUSG00000045038.14, intron 2 of 14) protein_coding-intron (ENSMUSG00000045038.14, intron 3 of 15) -42409 ENSMUSG00000045038.14 ENSMUSG00000045038 ENSMUST00000136986 Prkce protein_coding Interval_87707 chr19 55244881 55245401 + 0 NA Intergenic Intergenic -3905 ENSMUSG00000055523.7 ENSMUSG00000055523 ENSMUST00000069183 Gucy2g protein_coding Interval_47621 chr13 90202391 90203365 + 0 NA intron (ENSMUSG00000114541.1, intron 3 of 5) lincRNA-intron (ENSMUSG00000114541.1, intron 3 of 5) 14264 ENSMUSG00000114541.1 ENSMUSG00000114541 ENSMUST00000225610 Gm29680 lincRNA Interval_82669 chr18 75808961 75809699 + 0 NA Intergenic Intergenic -10885 ENSMUSG00000044646.15 ENSMUSG00000044646 ENSMUST00000167921 Zbtb7c protein_coding Interval_274 KZ289068.1 477014 477319 + 0 NA NA NA NA NA Interval_148246 chr7 80069337 80070026 + 0 NA intron (ENSMUSG00000108714.1, intron 1 of 2) protein_coding-intron (ENSMUSG00000048897.15, intron 1 of 4) 5566 ENSMUSG00000108714.1 ENSMUSG00000108714 ENSMUST00000206022 Gm21057 antisense Interval_159498 chr8 95092049 95092929 + 0 NA intron (ENSMUSG00000031787.8, intron 3 of 16) protein_coding-intron (ENSMUSG00000031787.8, intron 4 of 19) -1813 ENSMUSG00000110516.1 ENSMUSG00000110516 ENSMUST00000212448 Gm45758 TEC Interval_95754 chr2 115855687 115856129 + 0 NA Intergenic Intergenic 12959 ENSMUSG00000027210.20 ENSMUSG00000027210 ENSMUST00000138526 Meis2 protein_coding Interval_136094 chr6 50806729 50807579 + 0 NA intron (ENSMUSG00000107667.2, intron 4 of 4) lincRNA-intron (ENSMUSG00000107667.2, intron 2 of 2) -4123 ENSMUSG00000107978.1 ENSMUSG00000107978 ENSMUST00000204514 Gm44109 lincRNA Interval_145583 chr7 35718228 35718961 + 0 NA TTS (ENSMUSG00000043671.14) protein_coding-TTS (ENSMUSG00000043671.14) -10029 ENSMUSG00000043671.14 ENSMUSG00000043671 ENSMUST00000124116 Dpy19l3 protein_coding Interval_68590 chr16 79991625 79992148 + 0 NA Intergenic Intergenic -7490 ENSMUSG00000101810.1 ENSMUSG00000101810 ENSMUST00000191029 1700066C05Rik lincRNA Interval_5391 chr1 88453218 88453849 + 0 NA intron (ENSMUSG00000099553.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000099553.1, intron 1 of 2) -6150 ENSMUSG00000100908.1 ENSMUSG00000100908 ENSMUST00000186556 Gm28888 lincRNA Interval_58692 chr15 37164122 37165166 + 0 NA Intergenic Intergenic 7760 ENSMUSG00000115848.1 ENSMUSG00000115848 ENSMUST00000227699 Gm9509 processed_pseudogene Interval_120525 chr4 149146457 149147680 + 0 NA Intergenic Intergenic -3680 ENSMUSG00000080746.3 ENSMUSG00000080746 ENSMUST00000120596 Rpsa-ps12 processed_pseudogene Interval_10648 chr1 172436815 172437334 + 0 NA Intergenic Intergenic -36960 ENSMUSG00000103357.1 ENSMUSG00000103357 ENSMUST00000194187 Gm7804 transcribed_processed_pseudogene Interval_33169 chr11 114887146 114887707 + 0 NA Intergenic Intergenic -2868 ENSMUSG00000034652.12 ENSMUSG00000034652 ENSMUST00000153245 Cd300a protein_coding Interval_127292 chr5 102149257 102150054 + 0 NA Intergenic Intergenic -9871 ENSMUSG00000105088.1 ENSMUSG00000105088 ENSMUST00000195986 Gm17978 processed_pseudogene Interval_139283 chr6 97861921 97862254 + 0 NA intron (ENSMUSG00000035158.15, intron 1 of 9) protein_coding-intron (ENSMUSG00000035158.15, intron 1 of 9) 28452 ENSMUSG00000083086.1 ENSMUSG00000083086 ENSMUST00000118062 Gm15531 processed_pseudogene Interval_23293 chr11 21217773 21217967 + 0 NA Intergenic Intergenic -9785 ENSMUSG00000082898.1 ENSMUSG00000082898 ENSMUST00000121606 Gm12041 processed_pseudogene Interval_151140 chr7 118775962 118776314 + 0 NA intron (ENSMUSG00000030982.19, intron 12 of 27) protein_coding-intron (ENSMUSG00000030982.19, intron 5 of 23) 8121 ENSMUSG00000109303.1 ENSMUSG00000109303 ENSMUST00000208351 Gm44549 sense_intronic Interval_171782 chr9 121057433 121058774 + 0 NA intron (ENSMUSG00000040936.15, intron 34 of 36) protein_coding-intron (ENSMUSG00000040936.15, intron 4 of 7) -97596 ENSMUSG00000040936.15 ENSMUSG00000040936 ENSMUST00000164969 Ulk4 protein_coding Interval_11667 chr1 184395007 184395807 + 0 NA Intergenic Intergenic -12966 ENSMUSG00000102794.1 ENSMUSG00000102794 ENSMUST00000194295 Gm37712 lincRNA Interval_33575 chr11 117307866 117309542 + 0 NA intron (ENSMUSG00000059248.13, intron 1 of 2) protein_coding-intron (ENSMUSG00000059248.13, intron 2 of 10) -23724 ENSMUSG00000059248.13 ENSMUSG00000059248 ENSMUST00000129387 Septin9 protein_coding Interval_70535 chr17 11680784 11681925 + 0 NA intron (ENSMUSG00000023826.16, intron 6 of 10) protein_coding-intron (ENSMUSG00000023826.16, intron 7 of 11) 50991 ENSMUSG00000104466.1 ENSMUSG00000104466 ENSMUST00000194203 Gm10513 TEC Interval_18037 chr10 81487846 81488248 + 0 NA TTS (ENSMUSG00000020238.14) protein_coding-TTS (ENSMUSG00000020238.14) 4008 ENSMUSG00000020238.14 ENSMUSG00000020238 ENSMUST00000151680 Ncln protein_coding Interval_63360 chr15 100537348 100538151 + 0 NA intron (ENSMUSG00000009733.9, intron 1 of 2) protein_coding-intron (ENSMUSG00000009733.9, intron 2 of 15) -25505 ENSMUSG00000009733.9 ENSMUSG00000009733 ENSMUST00000231138 Tfcp2 protein_coding Interval_55647 chr14 97992879 97993352 + 0 NA intron (ENSMUSG00000055639.16, intron 2 of 9) protein_coding-intron (ENSMUSG00000055639.16, intron 2 of 10) -25124 ENSMUSG00000089549.1 ENSMUSG00000089549 ENSMUST00000158924 Gm25831 snRNA Interval_57546 chr15 12238547 12239325 + 0 NA intron (ENSMUSG00000039458.15, intron 6 of 15) protein_coding-intron (ENSMUSG00000039458.15, intron 6 of 15) 33832 ENSMUSG00000039458.15 ENSMUSG00000039458 ENSMUST00000173071 Mtmr12 protein_coding Interval_57107 chr15 6554957 6555762 + 0 NA intron (ENSMUSG00000022148.16, intron 1 of 1) protein_coding-intron (ENSMUSG00000022148.16, intron 1 of 1) -14168 ENSMUSG00000022148.16 ENSMUSG00000022148 ENSMUST00000161947 Fyb protein_coding Interval_81313 chr18 57867535 57868311 + 0 NA Intergenic Intergenic -59282 ENSMUSG00000024597.11 ENSMUSG00000024597 ENSMUST00000236673 Slc12a2 protein_coding Interval_39366 chr12 86923618 86924467 + 0 NA Intergenic Intergenic -28615 ENSMUSG00000034157.12 ENSMUSG00000034157 ENSMUST00000191463 Cipc protein_coding Interval_60663 chr15 76008438 76010559 + 0 NA promoter-TSS (ENSMUSG00000046761.13) protein_coding-promoter-TSS (ENSMUSG00000046761.13) 3883 ENSMUSG00000046761.13 ENSMUSG00000046761 ENSMUST00000060807 Fam83h protein_coding Interval_76146 chr17 75551132 75552396 + 0 NA promoter-TSS (ENSMUSG00000002017.10) protein_coding-promoter-TSS (ENSMUSG00000002017.10) 109 ENSMUSG00000002017.10 ENSMUSG00000002017 ENSMUST00000141969 Fam98a protein_coding Interval_131691 chr5 139324874 139326604 + 0 NA promoter-TSS (ENSMUSG00000056413.16) protein_coding-promoter-TSS (ENSMUSG00000056413.16) 13315 ENSMUSG00000098690.1 ENSMUSG00000098690 ENSMUST00000184884 Gm27316 misc_RNA Interval_141697 chr6 133724359 133725325 + 0 NA Intergenic Intergenic 7536 ENSMUSG00000108241.1 ENSMUSG00000108241 ENSMUST00000204187 Gm44252 processed_pseudogene Interval_116082 chr4 107486266 107486509 + 0 NA intron (ENSMUSG00000034762.9, intron 1 of 9) protein_coding-intron (ENSMUSG00000034762.9, intron 2 of 10) 51815 ENSMUSG00000092723.1 ENSMUSG00000092723 ENSMUST00000174982 Gm24804 miRNA Interval_63209 chr15 99746900 99747080 + 0 NA promoter-TSS (ENSMUSG00000023021.15) protein_coding-promoter-TSS (ENSMUSG00000023021.15) 80 ENSMUSG00000023021.15 ENSMUSG00000023021 ENSMUST00000176627 Cers5 protein_coding Interval_107415 chr3 107448021 107448441 + 0 NA exon (ENSMUSG00000027895.10, exon 2 of 4) protein_coding-exon (ENSMUSG00000027895.10, exon 2 of 4) 11321 ENSMUSG00000027895.10 ENSMUSG00000027895 ENSMUST00000238670 Kcnc4 protein_coding Interval_157744 chr8 72682974 72683408 + 0 NA intron (ENSMUSG00000048148.18, intron 10 of 18) protein_coding-intron (ENSMUSG00000048148.18, intron 10 of 18) -1123 ENSMUSG00000093276.1 ENSMUSG00000093276 ENSMUST00000175535 Gm26237 miRNA Interval_62635 chr15 95843736 95844952 + 0 NA intron (ENSMUSG00000064210.7, intron 2 of 20) protein_coding-intron (ENSMUSG00000064210.7, intron 1 of 19) -14272 ENSMUSG00000078648.3 ENSMUSG00000078648 ENSMUST00000168960 Gm17546 antisense Interval_33639 chr11 117685863 117687073 + 0 NA intron (ENSMUSG00000025571.13, intron 1 of 21) protein_coding-intron (ENSMUSG00000025571.13, intron 1 of 21) -62763 ENSMUSG00000025571.13 ENSMUSG00000025571 ENSMUST00000141287 Tnrc6c protein_coding Interval_157888 chr8 75245236 75245440 + 0 NA Intergenic Intergenic 30326 ENSMUSG00000110515.1 ENSMUSG00000110515 ENSMUST00000212828 Gm9644 processed_pseudogene Interval_32173 chr11 105927164 105927875 + 0 NA exon (ENSMUSG00000053580.16, exon 26 of 26) protein_coding-exon (ENSMUSG00000053580.16, exon 26 of 26) -16185 ENSMUSG00000103469.1 ENSMUSG00000103469 ENSMUST00000195385 Gm9910 TEC Interval_31297 chr11 99428382 99428667 + 0 NA exon (ENSMUSG00000035775.2, exon 8 of 8) protein_coding-exon (ENSMUSG00000035775.2, exon 8 of 8) -6265 ENSMUSG00000020912.4 ENSMUSG00000020912 ENSMUST00000017741 Krt12 protein_coding Interval_42923 chr13 21408195 21409239 + 0 NA Intergenic Intergenic -3334 ENSMUSG00000118467.1 ENSMUSG00000118467 ENSMUST00000238543 Gm50481 unitary_pseudogene Interval_61641 chr15 83106873 83107561 + 0 NA exon (ENSMUSG00000058586.12, exon 2 of 2) protein_coding-exon (ENSMUSG00000058586.12, exon 2 of 2) -1288 ENSMUSG00000090964.1 ENSMUSG00000090964 ENSMUST00000168123 Gm17206 antisense Interval_31176 chr11 98717679 98718780 + 0 NA TTS (ENSMUSG00000017210.14) protein_coding-TTS (ENSMUSG00000017210.14) -7140 ENSMUSG00000088169.1 ENSMUSG00000088169 ENSMUST00000157544 Gm22059 snoRNA Interval_26786 chr11 60477443 60479251 + 0 NA exon (ENSMUSG00000042678.17, exon 2 of 66) protein_coding-exon (ENSMUSG00000042678.17, exon 2 of 66) -1998 ENSMUSG00000042678.17 ENSMUSG00000042678 ENSMUST00000122825 Myo15 protein_coding Interval_34721 chr12 8921485 8922508 + 0 NA exon (ENSMUSG00000020585.4, exon 1 of 7) protein_coding-exon (ENSMUSG00000020585.4, exon 1 of 7) 332 ENSMUSG00000020585.4 ENSMUSG00000020585 ENSMUST00000020909 Laptm4a protein_coding Interval_59800 chr15 59382860 59383102 + 0 NA intron (ENSMUSG00000059586.10, intron 2 of 7) protein_coding-intron (ENSMUSG00000059586.10, intron 2 of 6) 8696 ENSMUSG00000059586.10 ENSMUSG00000059586 ENSMUST00000079703 Nsmce2 protein_coding Interval_130774 chr5 130295985 130296683 + 0 NA intron (ENSMUSG00000056310.14, intron 11 of 15) protein_coding-intron (ENSMUSG00000056310.14, intron 11 of 15) 40715 ENSMUSG00000056310.14 ENSMUSG00000056310 ENSMUST00000147619 Tyw1 protein_coding Interval_37029 chr12 56583929 56584665 + 0 NA intron (ENSMUSG00000098172.7, intron 2 of 2) antisense-intron (ENSMUSG00000098172.7, intron 2 of 2) -6772 ENSMUSG00000092515.8 ENSMUSG00000092515 ENSMUST00000182261 C87198 lincRNA Interval_26187 chr11 54961971 54963347 + 0 NA intron (ENSMUSG00000020400.17, intron 1 of 18) protein_coding-intron (ENSMUSG00000020400.17, intron 1 of 17) -6612 ENSMUSG00000020400.17 ENSMUSG00000020400 ENSMUST00000132776 Tnip1 protein_coding Interval_9001 chr1 153019592 153020094 + 0 NA intron (ENSMUSG00000042751.14, intron 2 of 8) protein_coding-intron (ENSMUSG00000042751.14, intron 1 of 10) 69664 ENSMUSG00000099969.1 ENSMUSG00000099969 ENSMUST00000190117 Gm28960 antisense Interval_62873 chr15 97619757 97620580 + 0 NA Intergenic Intergenic 60185 ENSMUSG00000022466.6 ENSMUSG00000022466 ENSMUST00000229008 Rpap3 protein_coding Interval_146531 chr7 46677443 46678417 + 0 NA Intergenic Intergenic 7453 ENSMUSG00000110010.1 ENSMUSG00000110010 ENSMUST00000209629 Gm45629 TEC Interval_118263 chr4 129905397 129906360 + 0 NA promoter-TSS (ENSMUSG00000086369.7) lincRNA-promoter-TSS (ENSMUSG00000086369.7) -338 ENSMUSG00000086369.7 ENSMUSG00000086369 ENSMUST00000139190 E330017L17Rik lincRNA Interval_27614 chr11 69059237 69060361 + 0 NA promoter-TSS (ENSMUSG00000045176.3) protein_coding-promoter-TSS (ENSMUSG00000045176.3) 82 ENSMUSG00000045176.3 ENSMUSG00000045176 ENSMUST00000051888 Borcs6 protein_coding Interval_20365 chr10 117131431 117132767 + 0 NA intron (ENSMUSG00000020170.4, intron 1 of 5) protein_coding-intron (ENSMUSG00000020170.4, intron 1 of 9) 16396 ENSMUSG00000020170.4 ENSMUSG00000020170 ENSMUST00000219104 Frs2 protein_coding Interval_63621 chr15 102393017 102394200 + 0 NA Intergenic Intergenic -12535 ENSMUSG00000001280.13 ENSMUSG00000001280 ENSMUST00000168802 Sp1 protein_coding Interval_128546 chr5 113947231 113947461 + 0 NA intron (ENSMUSG00000042121.16, intron 13 of 14) protein_coding-intron (ENSMUSG00000042121.16, intron 12 of 13) -17212 ENSMUSG00000105664.1 ENSMUSG00000105664 ENSMUST00000197573 Gm42797 lincRNA Interval_120235 chr4 144644396 144644721 + 0 NA Intergenic Intergenic 30851 ENSMUSG00000070609.3 ENSMUSG00000070609 ENSMUST00000094510 Aadacl4 protein_coding Interval_67170 chr16 44127834 44128030 + 0 NA intron (ENSMUSG00000052459.13, intron 1 of 3) protein_coding-intron (ENSMUSG00000052459.13, intron 1 of 14) 11773 ENSMUSG00000052459.13 ENSMUSG00000052459 ENSMUST00000147025 Atp6v1a protein_coding Interval_112548 chr4 43039888 43040586 + 0 NA promoter-TSS (ENSMUSG00000036002.12) protein_coding-promoter-TSS (ENSMUSG00000036002.12) 58 ENSMUSG00000036002.12 ENSMUSG00000036002 ENSMUST00000140998 Fam214b protein_coding Interval_99243 chr2 158349940 158350140 + 0 NA Intergenic Intergenic 6514 ENSMUSG00000065362.1 ENSMUSG00000065362 ENSMUST00000083428 Gm24411 snoRNA Interval_166023 chr9 55540499 55541361 + 0 NA promoter-TSS (ENSMUSG00000032318.12) protein_coding-promoter-TSS (ENSMUSG00000032318.12) -383 ENSMUSG00000090270.1 ENSMUSG00000090270 ENSMUST00000166637 Gm17226 antisense Interval_112080 chr4 34543062 34543435 + 0 NA Intergenic Intergenic -7703 ENSMUSG00000028291.7 ENSMUSG00000028291 ENSMUST00000132230 Akirin2 protein_coding Interval_106380 chr3 95763811 95764157 + 0 NA exon (ENSMUSG00000028106.13, exon 11 of 11) protein_coding-exon (ENSMUSG00000028106.13, exon 11 of 11) 12774 ENSMUSG00000028106.13 ENSMUSG00000028106 ENSMUST00000198741 Rprd2 protein_coding Interval_150987 chr7 117420080 117421733 + 0 NA intron (ENSMUSG00000030657.11, intron 1 of 6) protein_coding-intron (ENSMUSG00000030657.11, intron 1 of 11) 39044 ENSMUSG00000108693.1 ENSMUSG00000108693 ENSMUST00000205957 Gm45153 TEC Interval_126482 chr5 88886315 88887920 + 0 NA promoter-TSS (ENSMUSG00000060961.16) protein_coding-promoter-TSS (ENSMUSG00000060961.16) 631 ENSMUSG00000060961.16 ENSMUSG00000060961 ENSMUST00000134303 Slc4a4 protein_coding Interval_17813 chr10 80220399 80221587 + 0 NA Intergenic Intergenic -13267 ENSMUSG00000020156.16 ENSMUSG00000020156 ENSMUST00000136791 Pwwp3a protein_coding Interval_65141 chr16 20126336 20126790 + 0 NA exon (ENSMUSG00000062901.3, exon 8 of 8) protein_coding-exon (ENSMUSG00000062901.3, exon 8 of 8) 28978 ENSMUSG00000062901.3 ENSMUSG00000062901 ENSMUST00000231842 Klhl24 protein_coding Interval_81709 chr18 63756583 63756832 + 0 NA intron (ENSMUSG00000040560.10, intron 13 of 19) protein_coding-intron (ENSMUSG00000040560.10, intron 13 of 27) 6510 ENSMUSG00000117977.1 ENSMUSG00000117977 ENSMUST00000236836 Gm50106 antisense Interval_129073 chr5 117249081 117249671 + 0 NA intron (ENSMUSG00000061288.13, intron 14 of 20) protein_coding-intron (ENSMUSG00000061288.13, intron 13 of 19) 38192 ENSMUSG00000032959.12 ENSMUSG00000032959 ENSMUST00000139913 Pebp1 protein_coding Interval_139912 chr6 112662394 112662631 + 0 NA intron (ENSMUSG00000030254.16, intron 8 of 9) protein_coding-intron (ENSMUSG00000030254.16, intron 10 of 13) 34121 ENSMUSG00000030254.16 ENSMUSG00000030254 ENSMUST00000135092 Rad18 protein_coding Interval_67488 chr16 49807349 49808087 + 0 NA intron (ENSMUSG00000055447.19, intron 3 of 12) protein_coding-intron (ENSMUSG00000055447.19, intron 3 of 12) -8848 ENSMUSG00000087066.1 ENSMUSG00000087066 ENSMUST00000127115 Gm15518 antisense Interval_72044 chr17 27704115 27704511 + 0 NA promoter-TSS (ENSMUSG00000040276.15) protein_coding-promoter-TSS (ENSMUSG00000040276.15) 14036 ENSMUSG00000024215.14 ENSMUSG00000024215 ENSMUST00000138970 Spdef protein_coding Interval_25448 chr11 48660128 48660869 + 0 NA Intergenic Intergenic -24211 ENSMUSG00000088425.1 ENSMUSG00000088425 ENSMUST00000157800 Gm24422 snoRNA Interval_141887 chr6 135148255 135149016 + 0 NA promoter-TSS (ENSMUSG00000088372.1) snoRNA-promoter-TSS (ENSMUSG00000088372.1) -13 ENSMUSG00000088372.1 ENSMUSG00000088372 ENSMUST00000157747 Gm22881 snoRNA Interval_51448 chr14 27641200 27641536 + 0 NA intron (ENSMUSG00000040640.11, intron 2 of 3) protein_coding-intron (ENSMUSG00000040640.11, intron 1 of 15) -73009 ENSMUSG00000114653.1 ENSMUSG00000114653 ENSMUST00000224481 Gm18398 processed_pseudogene Interval_16992 chr10 70316920 70317610 + 0 NA Intergenic Intergenic -21037 ENSMUSG00000112676.1 ENSMUSG00000112676 ENSMUST00000219977 Gm20108 processed_pseudogene Interval_77331 chr17 88033107 88033492 + 0 NA intron (ENSMUSG00000005371.15, intron 1 of 22) protein_coding-intron (ENSMUSG00000005371.15, intron 1 of 22) 31944 ENSMUSG00000005371.15 ENSMUSG00000005371 ENSMUST00000235056 Fbxo11 protein_coding Interval_129812 chr5 122491420 122491668 + 0 NA TTS (ENSMUSG00000105970.1) TEC-TTS (ENSMUSG00000105970.1) 3364 ENSMUSG00000105970.1 ENSMUSG00000105970 ENSMUST00000197656 Gm43360 TEC Interval_11430 chr1 181894716 181895796 + 0 NA Intergenic Intergenic -42067 ENSMUSG00000056699.7 ENSMUSG00000056699 ENSMUST00000070987 Gm5533 lincRNA Interval_86992 chr19 45410817 45411561 + 0 NA intron (ENSMUSG00000025217.15, intron 2 of 13) protein_coding-intron (ENSMUSG00000025217.15, intron 1 of 14) 40006 ENSMUSG00000057605.4 ENSMUSG00000057605 ENSMUST00000077435 Gm6807 processed_pseudogene Interval_17521 chr10 77480825 77481081 + 0 NA Intergenic Intergenic 23036 ENSMUSG00000112818.1 ENSMUSG00000112818 ENSMUST00000218522 Gm35920 lincRNA Interval_113084 chr4 47724543 47725595 + 0 NA Intergenic Intergenic 121180 ENSMUSG00000098518.1 ENSMUSG00000098518 ENSMUST00000184188 Gm27668 misc_RNA Interval_170982 chr9 113480766 113481542 + 0 NA Intergenic Intergenic 27201 ENSMUSG00000109890.2 ENSMUSG00000109890 ENSMUST00000209716 AU023762 lincRNA Interval_85192 chr19 23586596 23586930 + 0 NA intron (ENSMUSG00000033053.4, intron 4 of 5) protein_coding-intron (ENSMUSG00000033053.4, intron 4 of 5) -19135 ENSMUSG00000117944.1 ENSMUSG00000117944 ENSMUST00000237913 Gm50422 processed_pseudogene Interval_88683 chr2 9730739 9731185 + 0 NA Intergenic Intergenic -99621 ENSMUSG00000104276.1 ENSMUSG00000104276 ENSMUST00000191950 Gm37866 TEC Interval_110389 chr3 157680496 157681499 + 0 NA Intergenic Intergenic 45411 ENSMUSG00000106632.1 ENSMUSG00000106632 ENSMUST00000199819 Gm33466 lincRNA Interval_158716 chr8 85519045 85519648 + 0 NA promoter-TSS (ENSMUSG00000031700.11) protein_coding-promoter-TSS (ENSMUSG00000031700.11) -63 ENSMUSG00000031700.11 ENSMUSG00000031700 ENSMUST00000143846 Gpt2 protein_coding Interval_7661 chr1 132899514 132900307 + 0 NA intron (ENSMUSG00000026443.3, intron 1 of 1) protein_coding-intron (ENSMUSG00000026443.3, intron 1 of 1) 19555 ENSMUSG00000026443.3 ENSMUSG00000026443 ENSMUST00000159088 Lrrn2 protein_coding Interval_4057 chr1 66963857 66964193 + 0 NA Intergenic Intergenic 12196 ENSMUSG00000082212.1 ENSMUSG00000082212 ENSMUST00000121328 Gm15826 processed_pseudogene Interval_142584 chr6 143576894 143577126 + 0 NA Intergenic Intergenic -41502 ENSMUSG00000084971.1 ENSMUSG00000084971 ENSMUST00000132321 4930579D09Rik lincRNA Interval_164330 chr9 35400691 35401106 + 0 NA Intergenic Intergenic -22690 ENSMUSG00000038119.15 ENSMUSG00000038119 ENSMUST00000127264 Cdon protein_coding Interval_30049 chr11 88888051 88889504 + 0 NA Intergenic Intergenic -16344 ENSMUSG00000065012.1 ENSMUSG00000065012 ENSMUST00000083078 Gm23507 snRNA Interval_143949 chr7 18396378 18397189 + 0 NA exon (ENSMUSG00000109209.1, exon 1 of 1) TEC-exon (ENSMUSG00000109209.1, exon 1 of 1) 4082 ENSMUSG00000109209.1 ENSMUSG00000109209 ENSMUST00000208748 Gm45104 TEC Interval_172429 chrX 19328632 19329003 + 0 NA Intergenic Intergenic -26184 ENSMUSG00000077277.1 ENSMUSG00000077277 ENSMUST00000104089 Gm22783 snRNA Interval_56228 chr14 114038656 114039881 + 0 NA Intergenic Intergenic -133175 ENSMUSG00000115572.1 ENSMUSG00000115572 ENSMUST00000227752 Gm18369 processed_pseudogene Interval_69789 chr16 96347997 96349233 + 0 NA Intergenic Intergenic -13179 ENSMUSG00000117081.1 ENSMUSG00000117081 ENSMUST00000113795 Gm49948 protein_coding Interval_15804 chr10 57205546 57205818 + 0 NA Intergenic Intergenic 31652 ENSMUSG00000088253.1 ENSMUSG00000088253 ENSMUST00000157628 Gm24285 snRNA Interval_119890 chr4 140701170 140704329 + 0 NA intron (ENSMUSG00000040945.13, intron 2 of 3) protein_coding-intron (ENSMUSG00000040945.13, intron 2 of 12) 1276 ENSMUSG00000040945.13 ENSMUSG00000040945 ENSMUST00000129838 Rcc2 protein_coding Interval_139185 chr6 97027149 97027499 + 0 NA intron (ENSMUSG00000046500.8, intron 1 of 5) protein_coding-intron (ENSMUSG00000046500.8, intron 1 of 5) 33069 ENSMUSG00000046500.8 ENSMUSG00000046500 ENSMUST00000203930 Tafa4 protein_coding Interval_30689 chr11 95914308 95915723 + 0 NA promoter-TSS (ENSMUSG00000013418.8) protein_coding-promoter-TSS (ENSMUSG00000013418.8) -124 ENSMUSG00000013418.8 ENSMUSG00000013418 ENSMUST00000038343 B4galnt2 protein_coding Interval_86840 chr19 44284074 44284932 + 0 NA Intergenic Intergenic -9573 ENSMUSG00000025203.6 ENSMUSG00000025203 ENSMUST00000237039 Scd2 protein_coding Interval_35254 chr12 19049242 19049716 + 0 NA intron (ENSMUSG00000114188.1, intron 2 of 3) lincRNA-intron (ENSMUSG00000114188.1, intron 2 of 3) 4773 ENSMUSG00000114188.1 ENSMUSG00000114188 ENSMUST00000222330 Gm40849 lincRNA Interval_148166 chr7 79591704 79592805 + 0 NA intron (ENSMUSG00000108776.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000108776.1, intron 1 of 1) 359 ENSMUSG00000108776.1 ENSMUSG00000108776 ENSMUST00000205717 Gm45169 lincRNA Interval_31426 chr11 100598409 100599650 + 0 NA intron (ENSMUSG00000014195.16, intron 3 of 13) protein_coding-intron (ENSMUSG00000014195.16, intron 3 of 13) 20602 ENSMUSG00000014195.16 ENSMUSG00000014195 ENSMUST00000132886 Dnajc7 protein_coding Interval_39535 chr12 89505155 89505516 + 0 NA intron (ENSMUSG00000066392.12, intron 8 of 18) protein_coding-intron (ENSMUSG00000066392.12, intron 9 of 19) 73999 ENSMUSG00000080680.1 ENSMUSG00000080680 ENSMUST00000117030 Gm23989 miRNA Interval_174851 chrX 169879415 169881036 + 0 NA intron (ENSMUSG00000035299.16, intron 1 of 9) protein_coding-intron (ENSMUSG00000035299.16, intron 1 of 9) -46726 ENSMUSG00000035299.16 ENSMUSG00000035299 ENSMUST00000079443 Mid1 protein_coding Interval_137959 chr6 83737003 83738444 + 0 NA exon (ENSMUSG00000034777.2, exon 3 of 3) protein_coding-exon (ENSMUSG00000034777.2, exon 3 of 3) -5341 ENSMUSG00000006269.7 ENSMUSG00000006269 ENSMUST00000206052 Atp6v1b1 protein_coding Interval_107359 chr3 106601140 106602215 + 0 NA Intergenic Intergenic 12417 ENSMUSG00000103053.1 ENSMUSG00000103053 ENSMUST00000192296 Gm38271 TEC Interval_104568 chr3 68330655 68330910 + 0 NA intron (ENSMUSG00000027777.15, intron 1 of 6) protein_coding-intron (ENSMUSG00000027777.15, intron 1 of 7) -2414 ENSMUSG00000102846.1 ENSMUSG00000102846 ENSMUST00000193165 Gm10292 processed_pseudogene Interval_55911 chr14 101996328 101997107 + 0 NA Intergenic Intergenic -13954 ENSMUSG00000115584.1 ENSMUSG00000115584 ENSMUST00000226515 Gm5854 processed_pseudogene Interval_121858 chr5 8910556 8910931 + 0 NA exon (ENSMUSG00000042476.12, exon 8 of 28) protein_coding-exon (ENSMUSG00000042476.12, exon 8 of 28) -2228 ENSMUSG00000106664.1 ENSMUSG00000106664 ENSMUST00000199413 Gm17936 processed_pseudogene Interval_116467 chr4 113785084 113785418 + 0 NA intron (ENSMUSG00000078598.11, intron 22 of 57) protein_coding-intron (ENSMUSG00000078598.11, intron 22 of 58) 214252 ENSMUSG00000078598.11 ENSMUSG00000078598 ENSMUST00000153413 Skint5 protein_coding Interval_75247 chr17 65330876 65331801 + 0 NA intron (ENSMUSG00000045036.15, intron 11 of 12) protein_coding-intron (ENSMUSG00000045036.15, intron 14 of 15) 64952 ENSMUSG00000117012.1 ENSMUSG00000117012 ENSMUST00000232744 Gm18992 processed_pseudogene Interval_130249 chr5 125194898 125195667 + 0 NA Intergenic Intergenic 77533 ENSMUSG00000105039.1 ENSMUSG00000105039 ENSMUST00000198586 Gm32585 lincRNA Interval_50499 chr14 14120001 14121274 + 0 NA promoter-TSS (ENSMUSG00000021737.4) protein_coding-promoter-TSS (ENSMUSG00000021737.4) -531 ENSMUSG00000021737.4 ENSMUSG00000021737 ENSMUST00000147471 Psmd6 protein_coding Interval_130450 chr5 127707613 127708618 + 0 NA exon (ENSMUSG00000049971.17, exon 12 of 12) protein_coding-exon (ENSMUSG00000049971.17, exon 12 of 12) 75853 ENSMUSG00000049971.17 ENSMUSG00000049971 ENSMUST00000134529 Glt1d1 protein_coding Interval_71071 chr17 17648925 17649152 + 0 NA exon (ENSMUSG00000116818.1, exon 1 of 1) processed_pseudogene-exon (ENSMUSG00000116818.1, exon 1 of 1) 217 ENSMUSG00000116818.1 ENSMUSG00000116818 ENSMUST00000232676 Gm7513 processed_pseudogene Interval_34717 chr12 8899097 8900881 + 0 NA Intergenic Intergenic -12935 ENSMUSG00000112891.1 ENSMUSG00000112891 ENSMUST00000219499 Gm47391 lincRNA Interval_128707 chr5 114836730 114837984 + 0 NA Intergenic Intergenic 4718 ENSMUSG00000107256.1 ENSMUSG00000107256 ENSMUST00000202029 Gm13821 TEC Interval_168216 chr9 77995460 77995953 + 0 NA intron (ENSMUSG00000111610.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000111610.1, intron 1 of 1) 3107 ENSMUSG00000111610.1 ENSMUSG00000111610 ENSMUST00000216017 Gm34829 lincRNA Interval_4324 chr1 72718909 72719353 + 0 NA Intergenic Intergenic 7817 ENSMUSG00000046330.10 ENSMUSG00000046330 ENSMUST00000211963 Rpl37a protein_coding Interval_62987 chr15 98510556 98510959 + 0 NA Intergenic Intergenic 9096 ENSMUSG00000065336.1 ENSMUSG00000065336 ENSMUST00000083402 Snora34 snoRNA Interval_107110 chr3 103632675 103632911 + 0 NA TTS (ENSMUSG00000027849.19) protein_coding-TTS (ENSMUSG00000027849.19) 13275 ENSMUSG00000087119.4 ENSMUSG00000087119 ENSMUST00000117271 Atg4a-ps protein_coding Interval_97815 chr2 144236508 144237305 + 0 NA Intergenic Intergenic -6335 ENSMUSG00000085127.1 ENSMUSG00000085127 ENSMUST00000146746 4930444E06Rik antisense Interval_3436 chr1 58346375 58346949 + 0 NA intron (ENSMUSG00000079554.2, intron 28 of 35) protein_coding-intron (ENSMUSG00000079554.2, intron 28 of 35) -31006 ENSMUSG00000089822.1 ENSMUSG00000089822 ENSMUST00000161126 Gm15759 antisense Interval_62709 chr15 96392232 96392765 + 0 NA intron (ENSMUSG00000033237.19, intron 3 of 4) protein_coding-intron (ENSMUSG00000033237.19, intron 19 of 20) -12360 ENSMUSG00000093529.1 ENSMUSG00000093529 ENSMUST00000176951 Gm25397 miRNA Interval_14161 chr10 28193779 28193995 + 0 NA intron (ENSMUSG00000019889.10, intron 1 of 2) protein_coding-intron (ENSMUSG00000019889.10, intron 1 of 31) 20234 ENSMUSG00000076377.1 ENSMUSG00000076377 ENSMUST00000102422 Gm22370 miRNA Interval_59994 chr15 63532676 63532989 + 0 NA intron (ENSMUSG00000115520.2, intron 2 of 8) lincRNA-intron (ENSMUSG00000115520.2, intron 2 of 8) -40539 ENSMUSG00000115377.1 ENSMUSG00000115377 ENSMUST00000227647 Gm4942 processed_pseudogene Interval_170583 chr9 109009807 109010320 + 0 NA intron (ENSMUSG00000025648.18, intron 6 of 6) protein_coding-intron (ENSMUSG00000025648.18, intron 7 of 13) 11175 ENSMUSG00000025648.18 ENSMUSG00000025648 ENSMUST00000198763 Pfkfb4 protein_coding Interval_155628 chr8 35288759 35289982 + 0 NA Intergenic Intergenic -43891 ENSMUSG00000109688.1 ENSMUSG00000109688 ENSMUST00000211189 Gm34597 lincRNA Interval_48762 chr13 102888331 102890096 + 0 NA intron (ENSMUSG00000034751.17, intron 3 of 27) protein_coding-intron (ENSMUSG00000034751.17, intron 2 of 27) 126778 ENSMUSG00000090329.1 ENSMUSG00000090329 ENSMUST00000170645 Gm17160 antisense Interval_106215 chr3 94669083 94671274 + 0 NA intron (ENSMUSG00000085006.7, intron 1 of 10) transcribed_unprocessed_pseudogene-intron (ENSMUSG00000085006.7, intron 1 of 10) -4077 ENSMUSG00000085006.7 ENSMUSG00000085006 ENSMUST00000126387 BC021767 transcribed_unprocessed_pseudogene Interval_77123 chr17 86724922 86725309 + 0 NA Intergenic Intergenic -21708 ENSMUSG00000087710.1 ENSMUSG00000087710 ENSMUST00000157085 Gm22235 snRNA Interval_146515 chr7 46535256 46535761 + 0 NA intron (ENSMUSG00000030839.12, intron 9 of 11) protein_coding-intron (ENSMUSG00000030839.12, intron 9 of 10) -22728 ENSMUSG00000110316.1 ENSMUSG00000110316 ENSMUST00000211086 Gm45311 sense_intronic Interval_106388 chr3 95855379 95856359 + 0 NA promoter-TSS (ENSMUSG00000015748.13) protein_coding-promoter-TSS (ENSMUSG00000015748.13) -97 ENSMUSG00000097189.1 ENSMUSG00000097189 ENSMUST00000180383 Gm26594 lincRNA Interval_99001 chr2 156556524 156556848 + 0 NA intron (ENSMUSG00000027628.10, intron 4 of 4) protein_coding-intron (ENSMUSG00000027628.10, intron 3 of 3) 9076 ENSMUSG00000027628.10 ENSMUSG00000027628 ENSMUST00000126250 Aar2 protein_coding Interval_160253 chr8 107482091 107483246 + 0 NA promoter-TSS (ENSMUSG00000031930.11) protein_coding-promoter-TSS (ENSMUSG00000031930.11) -37976 ENSMUSG00000110501.1 ENSMUSG00000110501 ENSMUST00000211879 Gm45900 processed_pseudogene Interval_144467 chr7 25321845 25322560 + 0 NA intron (ENSMUSG00000045039.9, intron 1 of 40) protein_coding-intron (ENSMUSG00000045039.9, intron 1 of 40) 16094 ENSMUSG00000043843.17 ENSMUSG00000043843 ENSMUST00000108409 Tmem145 protein_coding Interval_62400 chr15 91863744 91865172 + 0 NA intron (ENSMUSG00000044021.14, intron 1 of 42) protein_coding-intron (ENSMUSG00000044021.14, intron 1 of 42) -13321 ENSMUSG00000044021.14 ENSMUSG00000044021 ENSMUST00000088547 Muc19 protein_coding Interval_55348 chr14 84247843 84248729 + 0 NA Intergenic Intergenic -121412 ENSMUSG00000115612.1 ENSMUSG00000115612 ENSMUST00000228759 Gm29800 processed_pseudogene Interval_147709 chr7 72358960 72359169 + 0 NA Intergenic Intergenic -129704 ENSMUSG00000032776.9 ENSMUSG00000032776 ENSMUST00000206755 Mctp2 protein_coding Interval_149 GL456392.1 12032 12509 + 0 NA NA NA NA NA Interval_138042 chr6 84545408 84545734 + 0 NA Intergenic Intergenic 9695 ENSMUSG00000107926.1 ENSMUSG00000107926 ENSMUST00000204799 4930504D19Rik lincRNA Interval_40036 chr12 100683822 100684059 + 0 NA intron (ENSMUSG00000021180.9, intron 1 of 7) protein_coding-intron (ENSMUSG00000021180.9, intron 1 of 17) 41180 ENSMUSG00000021180.9 ENSMUSG00000021180 ENSMUST00000222347 Rps6ka5 protein_coding Interval_114609 chr4 83183119 83184059 + 0 NA Intergenic Intergenic -10399 ENSMUSG00000083245.1 ENSMUSG00000083245 ENSMUST00000117732 Gm11185 processed_pseudogene Interval_130532 chr5 128606203 128606849 + 0 NA Intergenic Intergenic 5682 ENSMUSG00000081683.5 ENSMUSG00000081683 ENSMUST00000117102 Fzd10 protein_coding Interval_90922 chr2 33486477 33487365 + 0 NA Intergenic Intergenic -2861 ENSMUSG00000086939.1 ENSMUSG00000086939 ENSMUST00000134014 Gm13530 lincRNA Interval_105533 chr3 87466697 87467982 + 0 NA exon (ENSMUSG00000048031.15, exon 13 of 13) protein_coding-exon (ENSMUSG00000048031.15, exon 13 of 13) 31566 ENSMUSG00000048031.15 ENSMUSG00000048031 ENSMUST00000178261 Fcrl5 protein_coding Interval_53012 chr14 53443133 53443501 + 0 NA promoter-TSS (ENSMUSG00000096908.3) TR_V_gene-promoter-TSS (ENSMUSG00000096908.3) 68 ENSMUSG00000096908.3 ENSMUSG00000096908 ENSMUST00000177622 Trav7-3 TR_V_gene Interval_52368 chr14 45438247 45439737 + 0 NA Intergenic Intergenic 5997 ENSMUSG00000115209.1 ENSMUSG00000115209 ENSMUST00000228291 Gm34250 lincRNA Interval_38435 chr12 79018080 79018322 + 0 NA Intergenic Intergenic -10861 ENSMUSG00000046157.13 ENSMUSG00000046157 ENSMUST00000173095 Tmem229b protein_coding Interval_95526 chr2 111441323 111441525 + 0 NA Intergenic Intergenic -7718 ENSMUSG00000095586.1 ENSMUSG00000095586 ENSMUST00000075390 Olfr1287 protein_coding Interval_62652 chr15 95964055 95964323 + 0 NA intron (ENSMUSG00000064210.7, intron 18 of 20) protein_coding-intron (ENSMUSG00000064210.7, intron 17 of 19) 29940 ENSMUSG00000115049.1 ENSMUSG00000115049 ENSMUST00000227616 Gm49172 processed_transcript Interval_12996 chr10 9009648 9010380 + 0 NA Intergenic Intergenic 58065 ENSMUSG00000111674.1 ENSMUSG00000111674 ENSMUST00000213841 Gm48728 lincRNA Interval_63944 chr16 4695831 4696033 + 0 NA intron (ENSMUSG00000004069.17, intron 5 of 10) protein_coding-intron (ENSMUSG00000004069.17, intron 5 of 11) 11817 ENSMUSG00000004069.17 ENSMUSG00000004069 ENSMUST00000229529 Dnaja3 protein_coding Interval_3288 chr1 55736313 55736769 + 0 NA intron (ENSMUSG00000038349.10, intron 5 of 5) protein_coding-intron (ENSMUSG00000038349.10, intron 5 of 5) 34516 ENSMUSG00000038349.10 ENSMUSG00000038349 ENSMUST00000187059 Plcl1 protein_coding Interval_4337 chr1 72804948 72806646 + 0 NA Intergenic Intergenic -42902 ENSMUSG00000039323.18 ENSMUSG00000039323 ENSMUST00000155703 Igfbp2 protein_coding Interval_124211 chr5 41332150 41332381 + 0 NA Intergenic Intergenic -9858 ENSMUSG00000106895.1 ENSMUSG00000106895 ENSMUST00000201337 Gm4754 processed_pseudogene Interval_92453 chr2 59800011 59801579 + 0 NA intron (ENSMUSG00000035168.16, intron 13 of 25) protein_coding-intron (ENSMUSG00000035168.16, intron 14 of 26) -5273 ENSMUSG00000035168.16 ENSMUSG00000035168 ENSMUST00000147650 Tanc1 protein_coding Interval_6992 chr1 121600760 121602186 + 0 NA Intergenic Intergenic -42258 ENSMUSG00000001674.11 ENSMUSG00000001674 ENSMUST00000131471 Ddx18 protein_coding Interval_170551 chr9 108642153 108642618 + 0 NA intron (ENSMUSG00000064145.12, intron 3 of 6) protein_coding-intron (ENSMUSG00000064145.12, intron 3 of 15) 11343 ENSMUSG00000095798.1 ENSMUSG00000095798 ENSMUST00000116956 Gm26298 miRNA Interval_51296 chr14 25810960 25811522 + 0 NA Intergenic Intergenic -1360 ENSMUSG00000099057.1 ENSMUSG00000099057 ENSMUST00000184296 Gm27185 processed_pseudogene Interval_144414 chr7 25007761 25010940 + 0 NA TTS (ENSMUSG00000003378.9) protein_coding-TTS (ENSMUSG00000003378.9) -3407 ENSMUSG00000040907.15 ENSMUSG00000040907 ENSMUST00000125444 Atp1a3 protein_coding Interval_165091 chr9 44509698 44510827 + 0 NA exon (ENSMUSG00000063382.6, exon 9 of 9) protein_coding-exon (ENSMUSG00000063382.6, exon 9 of 9) 16320 ENSMUSG00000047880.15 ENSMUSG00000047880 ENSMUST00000213357 Cxcr5 protein_coding Interval_85712 chr19 29976722 29977504 + 0 NA Intergenic Intergenic -8986 ENSMUSG00000087937.1 ENSMUSG00000087937 ENSMUST00000157312 Gm26046 snRNA Interval_42435 chr13 13523825 13525200 + 0 NA Intergenic Intergenic 9774 ENSMUSG00000114068.1 ENSMUSG00000114068 ENSMUST00000221249 Gm48783 TEC Interval_169865 chr9 102616544 102616922 + 0 NA intron (ENSMUSG00000032534.18, intron 2 of 5) protein_coding-intron (ENSMUSG00000032534.18, intron 5 of 16) 9248 ENSMUSG00000032534.18 ENSMUSG00000032534 ENSMUST00000162297 Cep63 protein_coding Interval_12395 chr1 192942707 192942919 + 0 NA intron (ENSMUSG00000016200.14, intron 2 of 2) protein_coding-intron (ENSMUSG00000016200.14, intron 4 of 8) 54242 ENSMUSG00000102162.1 ENSMUSG00000102162 ENSMUST00000192374 Gm2367 processed_pseudogene Interval_164300 chr9 35134525 35135693 + 0 NA intron (ENSMUSG00000032040.15, intron 3 of 6) protein_coding-intron (ENSMUSG00000032040.15, intron 3 of 5) -9527 ENSMUSG00000088056.1 ENSMUSG00000088056 ENSMUST00000157431 Gm24262 snoRNA Interval_107211 chr3 104654354 104654573 + 0 NA intron (ENSMUSG00000032902.1, intron 4 of 4) protein_coding-intron (ENSMUSG00000032902.1, intron 4 of 4) 8222 ENSMUSG00000106287.1 ENSMUSG00000106287 ENSMUST00000199375 Gm43585 sense_intronic Interval_27505 chr11 68278995 68280508 + 0 NA intron (ENSMUSG00000020902.12, intron 3 of 7) protein_coding-intron (ENSMUSG00000020902.12, intron 2 of 6) -8872 ENSMUSG00000084993.1 ENSMUSG00000084993 ENSMUST00000151817 Gm12305 sense_intronic Interval_171756 chr9 120750578 120751058 + 0 NA exon (ENSMUSG00000111831.1, exon 1 of 2) lincRNA-exon (ENSMUSG00000111831.1, exon 1 of 2) 325 ENSMUSG00000111831.1 ENSMUSG00000111831 ENSMUST00000215385 Gm47064 lincRNA Interval_2492 chr1 39727750 39728428 + 0 NA Intergenic Intergenic -7092 ENSMUSG00000057173.8 ENSMUSG00000057173 ENSMUST00000126760 Rfx8 protein_coding Interval_96769 chr2 127989201 127989411 + 0 NA intron (ENSMUSG00000027380.10, intron 4 of 10) protein_coding-intron (ENSMUSG00000027380.10, intron 11 of 17) 97318 ENSMUSG00000093203.1 ENSMUSG00000093203 ENSMUST00000175462 Gm22411 miRNA Interval_21550 chr10 129799939 129800161 + 0 NA TTS (ENSMUSG00000063173.2) protein_coding-TTS (ENSMUSG00000063173.2) 4346 ENSMUSG00000063173.2 ENSMUSG00000063173 ENSMUST00000076437 Olfr811 protein_coding Interval_170777 chr9 110687234 110687477 + 0 NA intron (ENSMUSG00000019659.8, intron 1 of 5) protein_coding-intron (ENSMUSG00000019659.8, intron 1 of 6) -12401 ENSMUSG00000104945.1 ENSMUSG00000104945 ENSMUST00000197421 Gm35715 antisense Interval_144167 chr7 19762847 19764609 + 0 NA TTS (ENSMUSG00000002980.14) protein_coding-TTS (ENSMUSG00000002980.14) -1474 ENSMUSG00000109136.1 ENSMUSG00000109136 ENSMUST00000208280 Gm45114 TEC Interval_110937 chr4 10563401 10563773 + 0 NA intron (ENSMUSG00000086080.7, intron 1 of 3) lincRNA-intron (ENSMUSG00000086080.7, intron 1 of 3) -17225 ENSMUSG00000081361.1 ENSMUSG00000081361 ENSMUST00000118586 Gm11813 processed_pseudogene Interval_95837 chr2 117119317 117121918 + 0 NA promoter-TSS (ENSMUSG00000027351.14) protein_coding-promoter-TSS (ENSMUSG00000027351.14) -1021 ENSMUSG00000027351.14 ENSMUSG00000027351 ENSMUST00000110901 Spred1 protein_coding Interval_139221 chr6 97278029 97279390 + 0 NA Intergenic Intergenic 12552 ENSMUSG00000030064.16 ENSMUSG00000030064 ENSMUST00000124050 Frmd4b protein_coding Interval_146109 chr7 43975882 43976274 + 0 NA promoter-TSS (ENSMUSG00000059042.3) protein_coding-promoter-TSS (ENSMUSG00000059042.3) 17 ENSMUSG00000059042.3 ENSMUSG00000059042 ENSMUST00000081399 Klk1b9 protein_coding Interval_124058 chr5 37904816 37905609 + 0 NA Intergenic Intergenic 10862 ENSMUSG00000106718.1 ENSMUSG00000106718 ENSMUST00000201327 Gm20052 lincRNA Interval_59112 chr15 44209679 44211117 + 0 NA intron (ENSMUSG00000038760.14, intron 2 of 2) protein_coding-intron (ENSMUSG00000038760.14, intron 2 of 3) 13431 ENSMUSG00000038760.14 ENSMUSG00000038760 ENSMUST00000227505 Trhr protein_coding Interval_57680 chr15 15091289 15092364 + 0 NA Intergenic Intergenic -46361 ENSMUSG00000115208.1 ENSMUSG00000115208 ENSMUST00000226940 Gm49118 processed_pseudogene Interval_148294 chr7 80339628 80341148 + 0 NA promoter-TSS (ENSMUSG00000030533.16) protein_coding-promoter-TSS (ENSMUSG00000030533.16) -217 ENSMUSG00000030533.16 ENSMUSG00000030533 ENSMUST00000206494 Unc45a protein_coding Interval_64229 chr16 9361917 9363226 + 0 NA Intergenic Intergenic 203801 ENSMUSG00000116123.1 ENSMUSG00000116123 ENSMUST00000229655 Gm49451 lincRNA Interval_164716 chr9 40772357 40773305 + 0 NA intron (ENSMUSG00000032024.10, intron 4 of 6) protein_coding-intron (ENSMUSG00000032024.10, intron 4 of 6) -10576 ENSMUSG00000111189.1 ENSMUSG00000111189 ENSMUST00000216792 Gm48293 antisense Interval_47545 chr13 87568951 87570008 + 0 NA Intergenic Intergenic 112701 ENSMUSG00000076958.1 ENSMUSG00000076958 ENSMUST00000103770 Gm24935 miRNA Interval_7158 chr1 127299666 127299958 + 0 NA intron (ENSMUSG00000036155.13, intron 2 of 10) protein_coding-intron (ENSMUSG00000036155.13, intron 2 of 17) -16704 ENSMUSG00000099471.1 ENSMUSG00000099471 ENSMUST00000170338 Gm8451 processed_pseudogene Interval_94035 chr2 81484669 81485869 + 0 NA Intergenic Intergenic 58073 ENSMUSG00000088194.1 ENSMUSG00000088194 ENSMUST00000157569 Gm23900 rRNA Interval_3162 chr1 54283086 54283332 + 0 NA intron (ENSMUSG00000025983.11, intron 8 of 30) protein_coding-intron (ENSMUSG00000025983.11, intron 8 of 27) -34001 ENSMUSG00000094013.1 ENSMUSG00000094013 ENSMUST00000178275 Gm25829 snRNA Interval_42086 chr13 8478775 8479281 + 0 NA intron (ENSMUSG00000052551.16, intron 1 of 10) protein_coding-intron (ENSMUSG00000052551.16, intron 1 of 9) -73992 ENSMUSG00000113742.1 ENSMUSG00000113742 ENSMUST00000220604 Gm48262 TEC Interval_160318 chr8 108214945 108215733 + 0 NA intron (ENSMUSG00000038872.10, intron 3 of 4) protein_coding-intron (ENSMUSG00000038872.10, intron 2 of 15) 220780 ENSMUSG00000038872.10 ENSMUSG00000038872 ENSMUST00000043896 Zfhx3 protein_coding Interval_164110 chr9 31559553 31560394 + 0 NA intron (ENSMUSG00000111853.1, intron 1 of 3) lincRNA-intron (ENSMUSG00000111853.1, intron 1 of 3) 364 ENSMUSG00000111853.1 ENSMUSG00000111853 ENSMUST00000216695 Gm31408 lincRNA Interval_54374 chr14 68021370 68022109 + 0 NA Intergenic Intergenic 29591 ENSMUSG00000114621.1 ENSMUSG00000114621 ENSMUST00000223853 Gm31107 lincRNA Interval_95865 chr2 117437942 117438185 + 0 NA Intergenic Intergenic -20366 ENSMUSG00000085681.1 ENSMUSG00000085681 ENSMUST00000138372 Gm13982 lincRNA Interval_18136 chr10 82893489 82894090 + 0 NA intron (ENSMUSG00000020250.10, intron 14 of 14) protein_coding-intron (ENSMUSG00000020250.10, intron 13 of 13) 27163 ENSMUSG00000109864.1 ENSMUSG00000109864 ENSMUST00000211623 Eid3 protein_coding Interval_116598 chr4 115972119 115972765 + 0 NA intron (ENSMUSG00000034171.13, intron 13 of 14) protein_coding-intron (ENSMUSG00000034171.13, intron 13 of 14) 27495 ENSMUSG00000034171.13 ENSMUSG00000034171 ENSMUST00000150614 Faah protein_coding Interval_64475 chr16 11783031 11785264 + 0 NA Intergenic Intergenic 5718 ENSMUSG00000115936.1 ENSMUSG00000115936 ENSMUST00000229695 4833415N18Rik lincRNA Interval_85888 chr19 32764080 32764523 + 0 NA intron (ENSMUSG00000013663.7, intron 1 of 4) protein_coding-intron (ENSMUSG00000013663.7, intron 1 of 8) -46924 ENSMUSG00000013663.7 ENSMUSG00000013663 ENSMUST00000154806 Pten protein_coding Interval_97777 chr2 143980644 143981256 + 0 NA intron (ENSMUSG00000027422.15, intron 2 of 23) protein_coding-intron (ENSMUSG00000027422.15, intron 2 of 23) -23305 ENSMUSG00000027422.15 ENSMUSG00000027422 ENSMUST00000037875 Rrbp1 protein_coding Interval_61273 chr15 80430336 80430689 + 0 NA Intergenic Intergenic 8081 ENSMUSG00000115888.1 ENSMUSG00000115888 ENSMUST00000231002 Gm31369 lincRNA Interval_6762 chr1 119321756 119322456 + 0 NA intron (ENSMUSG00000099860.1, intron 1 of 3) lincRNA-intron (ENSMUSG00000099860.1, intron 1 of 3) 4727 ENSMUSG00000099860.1 ENSMUSG00000099860 ENSMUST00000189894 Gm29456 lincRNA Interval_37435 chr12 68582825 68583089 + 0 NA Intergenic Intergenic -18013 ENSMUSG00000084660.1 ENSMUSG00000084660 ENSMUST00000122711 n-R5s61 rRNA Interval_41783 chr12 119091734 119091925 + 0 NA Intergenic Intergenic -24399 ENSMUSG00000114030.1 ENSMUSG00000114030 ENSMUST00000221798 Gm18921 processed_pseudogene Interval_82975 chr18 80116558 80117217 + 0 NA intron (ENSMUSG00000056214.9, intron 2 of 2) protein_coding-intron (ENSMUSG00000056214.9, intron 2 of 2) -26925 ENSMUSG00000096597.1 ENSMUSG00000096597 ENSMUST00000178391 Gm21886 protein_coding Interval_173990 chrX 123102955 123104918 + 0 NA intron (ENSMUSG00000079450.11, intron 1 of 1) protein_coding-intron (ENSMUSG00000079450.11, intron 1 of 2) -13631 ENSMUSG00000079450.11 ENSMUSG00000079450 ENSMUST00000169445 Cldn34c1 protein_coding Interval_155110 chr8 26659496 26659840 + 0 NA Intergenic Intergenic 8638 ENSMUSG00000109680.1 ENSMUSG00000109680 ENSMUST00000211305 Gm32098 lincRNA Interval_132704 chr5 147284537 147285085 + 0 NA Intergenic Intergenic -1513 ENSMUSG00000098687.1 ENSMUSG00000098687 ENSMUST00000184115 Mir7k miRNA Interval_83125 chr18 81774884 81775157 + 0 NA intron (ENSMUSG00000118254.1, intron 1 of 5) lincRNA-intron (ENSMUSG00000118254.1, intron 1 of 5) 2961 ENSMUSG00000118254.1 ENSMUSG00000118254 ENSMUST00000236148 Gm46614 lincRNA Interval_11797 chr1 185487144 185489374 + 0 NA intron (ENSMUSG00000102185.1, intron 1 of 1) transcribed_processed_pseudogene-intron (ENSMUSG00000102185.1, intron 1 of 1) 965 ENSMUSG00000102185.1 ENSMUSG00000102185 ENSMUST00000192616 5033404E19Rik transcribed_processed_pseudogene Interval_53922 chr14 63420966 63421357 + 0 NA Intergenic Intergenic 8569 ENSMUSG00000097948.1 ENSMUSG00000097948 ENSMUST00000182998 Gm21430 processed_pseudogene Interval_132757 chr5 147655925 147656419 + 0 NA intron (ENSMUSG00000029648.13, intron 10 of 12) protein_coding-intron (ENSMUSG00000029648.13, intron 10 of 11) -9365 ENSMUSG00000029648.13 ENSMUSG00000029648 ENSMUST00000031652 Flt1 protein_coding Interval_131039 chr5 134713075 134713772 + 0 NA intron (ENSMUSG00000029675.12, intron 12 of 24) protein_coding-intron (ENSMUSG00000029675.12, intron 24 of 36) 15683 ENSMUSG00000029675.12 ENSMUSG00000029675 ENSMUST00000201399 Eln protein_coding Interval_23078 chr11 19761128 19762263 + 0 NA Intergenic Intergenic -11629 ENSMUSG00000083601.1 ENSMUSG00000083601 ENSMUST00000118065 Gm12028 processed_pseudogene Interval_69255 chr16 91718811 91720404 + 0 NA intron (ENSMUSG00000058240.14, intron 1 of 7) protein_coding-intron (ENSMUSG00000058240.14, intron 1 of 12) 8990 ENSMUSG00000058240.14 ENSMUSG00000058240 ENSMUST00000123751 Cryzl1 protein_coding Interval_124286 chr5 43591802 43592064 + 0 NA intron (ENSMUSG00000061535.11, intron 2 of 2) protein_coding-intron (ENSMUSG00000061535.11, intron 1 of 2) 9798 ENSMUSG00000087290.2 ENSMUSG00000087290 ENSMUST00000152116 Gm15866 antisense Interval_94670 chr2 93187256 93189053 + 0 NA intron (ENSMUSG00000068735.14, intron 1 of 6) protein_coding-intron (ENSMUSG00000068735.14, intron 1 of 7) 606 ENSMUSG00000068735.14 ENSMUSG00000068735 ENSMUST00000143164 Trp53i11 protein_coding Interval_51951 chr14 34194766 34195890 + 0 NA TTS (ENSMUSG00000071531.3) protein_coding-TTS (ENSMUSG00000071531.3) 6305 ENSMUSG00000071531.3 ENSMUSG00000071531 ENSMUST00000096019 Gprin2 protein_coding Interval_127660 chr5 106380696 106382194 + 0 NA Intergenic Intergenic 12433 ENSMUSG00000105618.1 ENSMUSG00000105618 ENSMUST00000197142 Gm42916 lincRNA Interval_168041 chr9 75551759 75552275 + 0 NA intron (ENSMUSG00000058587.9, intron 1 of 1) protein_coding-intron (ENSMUSG00000058587.9, intron 1 of 9) 7640 ENSMUSG00000058587.9 ENSMUSG00000058587 ENSMUST00000217459 Tmod3 protein_coding Interval_111736 chr4 27019473 27019713 + 0 NA Intergenic Intergenic 106916 ENSMUSG00000083447.1 ENSMUSG00000083447 ENSMUST00000120562 Gm11904 processed_pseudogene Interval_125746 chr5 73850823 73851853 + 0 NA Intergenic Intergenic -61558 ENSMUSG00000107027.1 ENSMUSG00000107027 ENSMUST00000202487 1700019F05Rik lincRNA Interval_142474 chr6 142712529 142712800 + 0 NA Intergenic Intergenic -10391 ENSMUSG00000030249.15 ENSMUSG00000030249 ENSMUST00000204870 Abcc9 protein_coding Interval_107003 chr3 102763778 102764350 + 0 NA intron (ENSMUSG00000027858.13, intron 2 of 3) protein_coding-intron (ENSMUSG00000027858.13, intron 6 of 7) 4754 ENSMUSG00000027858.13 ENSMUSG00000027858 ENSMUST00000197345 Tspan2 protein_coding Interval_128304 chr5 112428911 112429504 + 0 NA intron (ENSMUSG00000058153.15, intron 10 of 14) protein_coding-intron (ENSMUSG00000058153.15, intron 12 of 16) -20219 ENSMUSG00000072722.2 ENSMUSG00000072722 ENSMUST00000100882 Gm6588 protein_coding Interval_121147 chr4 153521659 153521915 + 0 NA Intergenic Intergenic -39608 ENSMUSG00000039546.9 ENSMUSG00000039546 ENSMUST00000149177 Ajap1 protein_coding Interval_90560 chr2 31150920 31151220 + 0 NA exon (ENSMUSG00000087269.1, exon 2 of 2) processed_transcript-exon (ENSMUSG00000087269.1, exon 2 of 2) 1221 ENSMUSG00000087269.1 ENSMUSG00000087269 ENSMUST00000133550 D330023K18Rik processed_transcript Interval_135402 chr6 39087408 39087716 + 0 NA exon (ENSMUSG00000038507.6, exon 12 of 12) protein_coding-exon (ENSMUSG00000038507.6, exon 12 of 12) 3531 ENSMUSG00000038507.6 ENSMUSG00000038507 ENSMUST00000129916 Parp12 protein_coding Interval_100625 chr2 170547819 170548155 + 0 NA Intergenic Intergenic -28067 ENSMUSG00000085225.1 ENSMUSG00000085225 ENSMUST00000156516 Gm14637 antisense Interval_1234 chr1 17846220 17846656 + 0 NA Intergenic Intergenic -41021 ENSMUSG00000099895.1 ENSMUSG00000099895 ENSMUST00000189853 Gm28153 antisense Interval_142278 chr6 140397923 140398219 + 0 NA Intergenic Intergenic -22100 ENSMUSG00000107891.1 ENSMUSG00000107891 ENSMUST00000204085 Gm5051 processed_pseudogene Interval_6502 chr1 112837928 112838986 + 0 NA Intergenic Intergenic 37531 ENSMUSG00000099884.1 ENSMUSG00000099884 ENSMUST00000185696 Gm8204 processed_pseudogene Interval_137326 chr6 71361157 71361388 + 0 NA promoter-TSS (ENSMUSG00000108132.1) lincRNA-promoter-TSS (ENSMUSG00000108132.1) -443 ENSMUSG00000108132.1 ENSMUSG00000108132 ENSMUST00000204863 Gm44175 lincRNA Interval_169499 chr9 98497374 98498761 + 0 NA intron (ENSMUSG00000032454.9, intron 1 of 1) protein_coding-intron (ENSMUSG00000032454.9, intron 1 of 3) 4099 ENSMUSG00000103579.1 ENSMUSG00000103579 ENSMUST00000195675 Gm37113 TEC Interval_90357 chr2 29960006 29960254 + 0 NA exon (ENSMUSG00000019715.14, exon 16 of 16) protein_coding-exon (ENSMUSG00000019715.14, exon 16 of 16) -19947 ENSMUSG00000057738.14 ENSMUSG00000057738 ENSMUST00000201758 Sptan1 protein_coding Interval_160844 chr8 113634699 113636028 + 0 NA promoter-TSS (ENSMUSG00000078908.10) protein_coding-promoter-TSS (ENSMUSG00000078908.10) -224 ENSMUSG00000078908.10 ENSMUSG00000078908 ENSMUST00000035777 Mon1b protein_coding Interval_114739 chr4 84637515 84638193 + 0 NA intron (ENSMUSG00000028487.18, intron 1 of 5) protein_coding-intron (ENSMUSG00000028487.18, intron 1 of 7) -60009 ENSMUSG00000081775.1 ENSMUSG00000081775 ENSMUST00000119869 Gm12420 processed_pseudogene Interval_167418 chr9 68906415 68906665 + 0 NA intron (ENSMUSG00000032238.17, intron 1 of 5) protein_coding-intron (ENSMUSG00000032238.17, intron 1 of 10) 252649 ENSMUSG00000032238.17 ENSMUSG00000032238 ENSMUST00000113624 Rora protein_coding Interval_68901 chr16 88212074 88212287 + 0 NA intron (ENSMUSG00000022935.16, intron 1 of 16) protein_coding-intron (ENSMUSG00000022935.16, intron 1 of 15) 77684 ENSMUSG00000022935.16 ENSMUSG00000022935 ENSMUST00000210910 Grik1 protein_coding Interval_31895 chr11 103675333 103676040 + 0 NA Intergenic Intergenic 22012 ENSMUSG00000020946.13 ENSMUSG00000020946 ENSMUST00000145265 Gosr2 protein_coding Interval_29030 chr11 79986714 79987430 + 0 NA Intergenic Intergenic -6034 ENSMUSG00000017548.15 ENSMUSG00000017548 ENSMUST00000144188 Suz12 protein_coding Interval_91690 chr2 47816011 47816224 + 0 NA Intergenic Intergenic 274133 ENSMUSG00000092853.1 ENSMUSG00000092853 ENSMUST00000175112 Gm25959 miRNA Interval_34763 chr12 10493737 10494384 + 0 NA exon (ENSMUSG00000112127.1, exon 1 of 1) processed_pseudogene-exon (ENSMUSG00000112127.1, exon 1 of 1) 560 ENSMUSG00000112127.1 ENSMUSG00000112127 ENSMUST00000219091 Gm48886 processed_pseudogene Interval_86123 chr19 36883104 36883576 + 0 NA TTS (ENSMUSG00000024811.11) protein_coding-TTS (ENSMUSG00000024811.11) 33969 ENSMUSG00000024811.11 ENSMUSG00000024811 ENSMUST00000168654 Tnks2 protein_coding Interval_80545 chr18 43726984 43727281 + 0 NA TTS (ENSMUSG00000024503.3) protein_coding-TTS (ENSMUSG00000024503.3) 10425 ENSMUSG00000024503.3 ENSMUSG00000024503 ENSMUST00000025381 Spink1 protein_coding Interval_113275 chr4 52988810 52989793 + 0 NA promoter-TSS (ENSMUSG00000015242.14) protein_coding-promoter-TSS (ENSMUSG00000015242.14) 17 ENSMUSG00000015242.14 ENSMUSG00000015242 ENSMUST00000123780 Nipsnap3a protein_coding Interval_84607 chr19 14370538 14371191 + 0 NA Intergenic Intergenic 224675 ENSMUSG00000024642.17 ENSMUSG00000024642 ENSMUST00000235975 Tle4 protein_coding Interval_101420 chr2 181232511 181234185 + 0 NA exon (ENSMUSG00000027580.17, exon 9 of 20) protein_coding-exon (ENSMUSG00000027580.17, exon 9 of 20) 8677 ENSMUSG00000027580.17 ENSMUSG00000027580 ENSMUST00000155049 Helz2 protein_coding Interval_165206 chr9 45324973 45325461 + 0 NA intron (ENSMUSG00000037129.7, intron 1 of 12) protein_coding-intron (ENSMUSG00000037129.7, intron 1 of 12) -3138 ENSMUSG00000085831.7 ENSMUSG00000085831 ENSMUST00000131342 Lncbate3 antisense Interval_67379 chr16 48245689 48246168 + 0 NA Intergenic Intergenic -15886 ENSMUSG00000116756.1 ENSMUSG00000116756 ENSMUST00000232184 Gm49770 processed_pseudogene Interval_113806 chr4 58950245 58950482 + 0 NA intron (ENSMUSG00000038630.8, intron 3 of 5) protein_coding-intron (ENSMUSG00000038630.8, intron 3 of 5) 6735 ENSMUSG00000038630.8 ENSMUSG00000038630 ENSMUST00000107554 Zkscan16 protein_coding Interval_115031 chr4 88742640 88742832 + 0 NA intron (ENSMUSG00000086074.2, intron 1 of 1) antisense-intron (ENSMUSG00000086074.2, intron 1 of 1) -11735 ENSMUSG00000117268.1 ENSMUSG00000117268 ENSMUST00000233825 Gm49884 unprocessed_pseudogene Interval_54964 chr14 76532448 76533546 + 0 NA exon (ENSMUSG00000052584.10, exon 3 of 3) protein_coding-exon (ENSMUSG00000052584.10, exon 3 of 3) 6405 ENSMUSG00000115092.1 ENSMUSG00000115092 ENSMUST00000227784 E130202H07Rik lincRNA Interval_96637 chr2 126695757 126696595 + 0 NA Intergenic Intergenic -11152 ENSMUSG00000027363.15 ENSMUSG00000027363 ENSMUST00000110416 Usp8 protein_coding Interval_73638 chr17 42072361 42072825 + 0 NA Intergenic Intergenic -243396 ENSMUSG00000042256.5 ENSMUSG00000042256 ENSMUST00000232968 Ptchd4 protein_coding Interval_121922 chr5 9690439 9691292 + 0 NA intron (ENSMUSG00000003974.6, intron 1 of 5) protein_coding-intron (ENSMUSG00000003974.6, intron 1 of 5) 34305 ENSMUSG00000003974.6 ENSMUSG00000003974 ENSMUST00000004076 Grm3 protein_coding Interval_87717 chr19 55380770 55382320 + 0 NA exon (ENSMUSG00000024983.10, exon 4 of 4) protein_coding-exon (ENSMUSG00000024983.10, exon 4 of 4) 65218 ENSMUSG00000024983.10 ENSMUSG00000024983 ENSMUST00000224396 Vti1a protein_coding Interval_9212 chr1 155092472 155092733 + 0 NA Intergenic Intergenic 7034 ENSMUSG00000056708.5 ENSMUSG00000056708 ENSMUST00000055322 Ier5 protein_coding Interval_152071 chr7 128769510 128769790 + 0 NA intron (ENSMUSG00000055319.8, intron 12 of 18) protein_coding-intron (ENSMUSG00000055319.8, intron 12 of 18) 5313 ENSMUSG00000077283.1 ENSMUSG00000077283 ENSMUST00000104095 n-R5s158 rRNA Interval_128385 chr5 113038691 113039031 + 0 NA Intergenic Intergenic -5283 ENSMUSG00000065373.1 ENSMUSG00000065373 ENSMUST00000083439 Gm22740 snRNA Interval_155807 chr8 39005555 39006563 + 0 NA exon (ENSMUSG00000039530.17, exon 1 of 10) protein_coding-exon (ENSMUSG00000039530.17, exon 1 of 10) 151 ENSMUSG00000039530.17 ENSMUSG00000039530 ENSMUST00000210890 Tusc3 protein_coding Interval_31624 chr11 101797829 101798725 + 0 NA Intergenic Intergenic -12967 ENSMUSG00000017724.14 ENSMUSG00000017724 ENSMUST00000154512 Etv4 protein_coding Interval_62898 chr15 97787762 97788348 + 0 NA intron (ENSMUSG00000081534.3, intron 2 of 2) protein_coding-intron (ENSMUSG00000081534.3, intron 1 of 2) 9535 ENSMUSG00000081534.3 ENSMUSG00000081534 ENSMUST00000229084 Slc48a1 protein_coding Interval_170046 chr9 104039169 104039585 + 0 NA TTS (ENSMUSG00000032558.19) protein_coding-TTS (ENSMUSG00000032558.19) -1245 ENSMUSG00000032558.19 ENSMUSG00000032558 ENSMUST00000216593 Nphp3 protein_coding Interval_201 KQ030489.1 63102 65376 + 0 NA NA NA NA NA Interval_87818 chr19 56262427 56263907 + 0 NA Intergenic Intergenic 14478 ENSMUSG00000077223.1 ENSMUSG00000077223 ENSMUST00000104035 Gm22271 snoRNA Interval_38760 chr12 82066594 82067865 + 0 NA Intergenic Intergenic 66961 ENSMUSG00000113622.1 ENSMUSG00000113622 ENSMUST00000223212 Gm49749 lincRNA Interval_102149 chr3 18645405 18646039 + 0 NA Intergenic Intergenic 23560 ENSMUSG00000104918.1 ENSMUSG00000104918 ENSMUST00000198383 Gm42944 TEC Interval_34560 chr12 5136007 5137840 + 0 NA intron (ENSMUSG00000020627.10, intron 4 of 11) protein_coding-intron (ENSMUSG00000020627.10, intron 5 of 13) -69475 ENSMUSG00000112723.1 ENSMUSG00000112723 ENSMUST00000219035 Gm9110 processed_pseudogene Interval_91510 chr2 40127173 40127719 + 0 NA TTS (ENSMUSG00000083240.3) processed_pseudogene-TTS (ENSMUSG00000083240.3) 414 ENSMUSG00000083240.3 ENSMUSG00000083240 ENSMUST00000118708 Gm13453 processed_pseudogene Interval_87920 chr19 57118579 57119936 + 0 NA promoter-TSS (ENSMUSG00000025085.16) protein_coding-promoter-TSS (ENSMUSG00000025085.16) -154703 ENSMUSG00000117684.1 ENSMUSG00000117684 ENSMUST00000237596 4930449E18Rik antisense Interval_103658 chr3 51427840 51428765 + 0 NA intron (ENSMUSG00000063273.11, intron 1 of 4) protein_coding-intron (ENSMUSG00000063273.11, intron 1 of 19) 4689 ENSMUSG00000103191.1 ENSMUSG00000103191 ENSMUST00000191756 Gm37646 TEC Interval_122247 chr5 20653480 20653785 + 0 NA intron (ENSMUSG00000040003.18, intron 20 of 20) protein_coding-intron (ENSMUSG00000040003.18, intron 21 of 22) -48645 ENSMUSG00000073174.6 ENSMUSG00000073174 ENSMUST00000189302 Gm29254 3prime_overlapping_ncRNA Interval_33190 chr11 115101325 115105056 + 0 NA intron (ENSMUSG00000020732.13, intron 1 of 1) protein_coding-intron (ENSMUSG00000020732.13, intron 1 of 8) 23601 ENSMUSG00000047798.15 ENSMUSG00000047798 ENSMUST00000149335 Cd300lf protein_coding Interval_104777 chr3 72893084 72893966 + 0 NA intron (ENSMUSG00000027790.14, intron 45 of 47) protein_coding-intron (ENSMUSG00000027790.14, intron 44 of 46) 58184 ENSMUSG00000027790.14 ENSMUSG00000027790 ENSMUST00000170445 Sis protein_coding Interval_137088 chr6 67276149 67276428 + 0 NA intron (ENSMUSG00000036371.6, intron 4 of 6) protein_coding-intron (ENSMUSG00000036371.6, intron 5 of 7) 9283 ENSMUSG00000036371.6 ENSMUSG00000036371 ENSMUST00000204206 Serbp1 protein_coding Interval_140738 chr6 120969734 120970657 + 0 NA intron (ENSMUSG00000051586.17, intron 21 of 32) protein_coding-intron (ENSMUSG00000051586.17, intron 5 of 15) 11351 ENSMUSG00000108171.1 ENSMUSG00000108171 ENSMUST00000203013 Gm43915 antisense Interval_45655 chr13 56598194 56598386 + 0 NA Intergenic Intergenic 2753 ENSMUSG00000114604.1 ENSMUSG00000114604 ENSMUST00000224345 2010203P06Rik lincRNA Interval_85401 chr19 25505306 25506945 + 0 NA exon (ENSMUSG00000024837.15, exon 1 of 5) protein_coding-exon (ENSMUSG00000024837.15, exon 1 of 5) 418 ENSMUSG00000024837.15 ENSMUSG00000024837 ENSMUST00000160814 Dmrt1 protein_coding Interval_36157 chr12 36951505 36952185 + 0 NA exon (ENSMUSG00000113507.1, exon 1 of 4) lincRNA-exon (ENSMUSG00000113507.1, exon 1 of 4) 710 ENSMUSG00000113507.1 ENSMUSG00000113507 ENSMUST00000223106 Gm48613 lincRNA Interval_114011 chr4 62449497 62449991 + 0 NA exon (ENSMUSG00000028391.16, exon 10 of 10) protein_coding-exon (ENSMUSG00000028391.16, exon 10 of 10) -14492 ENSMUSG00000063851.12 ENSMUSG00000063851 ENSMUST00000079420 Rnf183 protein_coding Interval_26601 chr11 59134503 59136266 + 0 NA intron (ENSMUSG00000061462.18, intron 1 of 114) protein_coding-intron (ENSMUSG00000061462.18, intron 1 of 89) 991 ENSMUSG00000061462.18 ENSMUSG00000061462 ENSMUST00000133040 Obscn protein_coding Interval_90961 chr2 33734574 33735461 + 0 NA intron (ENSMUSG00000038740.9, intron 9 of 9) protein_coding-intron (ENSMUSG00000038740.9, intron 9 of 9) -16118 ENSMUSG00000085463.1 ENSMUSG00000085463 ENSMUST00000130532 9430024E24Rik lincRNA Interval_63217 chr15 99786611 99787692 + 0 NA intron (ENSMUSG00000023022.14, intron 6 of 7) protein_coding-intron (ENSMUSG00000023022.14, intron 9 of 10) 15975 ENSMUSG00000065643.1 ENSMUSG00000065643 ENSMUST00000083709 Gm25897 snRNA Interval_46599 chr13 67483630 67485313 + 0 NA promoter-TSS (ENSMUSG00000059839.9) protein_coding-promoter-TSS (ENSMUSG00000059839.9) -259 ENSMUSG00000059839.9 ENSMUSG00000059839 ENSMUST00000223868 Zfp874b protein_coding Interval_143758 chr7 16135371 16135567 + 0 NA intron (ENSMUSG00000030376.8, intron 2 of 9) protein_coding-intron (ENSMUSG00000030376.8, intron 2 of 8) 5643 ENSMUSG00000030376.8 ENSMUSG00000030376 ENSMUST00000168693 Slc8a2 protein_coding Interval_64054 chr16 6686043 6686830 + 0 NA intron (ENSMUSG00000008658.16, intron 3 of 11) protein_coding-intron (ENSMUSG00000008658.16, intron 2 of 14) -507311 ENSMUSG00000008658.16 ENSMUSG00000008658 ENSMUST00000231031 Rbfox1 protein_coding Interval_83487 chr18 87011585 87011914 + 0 NA Intergenic Intergenic -84831 ENSMUSG00000117908.1 ENSMUSG00000117908 ENSMUST00000236018 Gm5971 processed_pseudogene Interval_110022 chr3 152556709 152558418 + 0 NA intron (ENSMUSG00000039058.11, intron 6 of 13) protein_coding-intron (ENSMUSG00000039058.11, intron 6 of 13) -30811 ENSMUSG00000039058.11 ENSMUSG00000039058 ENSMUST00000198552 Ak5 protein_coding Interval_106978 chr3 102371998 102372891 + 0 NA intron (ENSMUSG00000105891.4, intron 2 of 4) lincRNA-intron (ENSMUSG00000105891.4, intron 2 of 4) 3282 ENSMUSG00000105966.1 ENSMUSG00000105966 ENSMUST00000199507 Gm43242 lincRNA Interval_95133 chr2 104145701 104146379 + 0 NA exon (ENSMUSG00000068373.15, exon 21 of 21) protein_coding-exon (ENSMUSG00000068373.15, exon 21 of 21) 23271 ENSMUSG00000032671.5 ENSMUSG00000032671 ENSMUST00000040374 A930018P22Rik protein_coding Interval_144183 chr7 19837320 19837656 + 0 NA Intergenic Intergenic -9485 ENSMUSG00000109424.1 ENSMUSG00000109424 ENSMUST00000207965 Gm44658 lincRNA Interval_49164 chr13 108953059 108953951 + 0 NA intron (ENSMUSG00000021699.17, intron 1 of 15) protein_coding-intron (ENSMUSG00000021699.17, intron 2 of 16) 93339 ENSMUSG00000021699.17 ENSMUSG00000021699 ENSMUST00000155459 Pde4d protein_coding Interval_135537 chr6 40112132 40112374 + 0 NA intron (ENSMUSG00000057716.7, intron 1 of 2) protein_coding-intron (ENSMUSG00000057716.7, intron 1 of 2) -6526 ENSMUSG00000097563.1 ENSMUSG00000097563 ENSMUST00000181762 Gm26638 sense_intronic Interval_167850 chr9 73063307 73064104 + 0 NA intron (ENSMUSG00000032202.11, intron 2 of 6) protein_coding-intron (ENSMUSG00000032202.11, intron 1 of 5) 2754 ENSMUSG00000098468.1 ENSMUSG00000098468 ENSMUST00000184223 Gm27186 processed_pseudogene Interval_170742 chr9 110468025 110468859 + 0 NA intron (ENSMUSG00000054792.15, intron 1 of 9) protein_coding-intron (ENSMUSG00000054792.15, intron 1 of 9) -8516 ENSMUSG00000032489.17 ENSMUSG00000032489 ENSMUST00000084952 Kif9 protein_coding Interval_111707 chr4 26437508 26437723 + 0 NA Intergenic Intergenic -4846 ENSMUSG00000082573.1 ENSMUSG00000082573 ENSMUST00000118958 Gm11903 processed_pseudogene Interval_25786 chr11 51713284 51713555 + 0 NA intron (ENSMUSG00000036391.16, intron 15 of 22) protein_coding-intron (ENSMUSG00000036391.16, intron 15 of 22) 24503 ENSMUSG00000084744.1 ENSMUSG00000084744 ENSMUST00000122795 Gm25291 snoRNA Interval_2685 chr1 43423255 43423484 + 0 NA Intergenic Intergenic 13785 ENSMUSG00000101923.1 ENSMUSG00000101923 ENSMUST00000189199 Gm29041 processed_pseudogene Interval_144275 chr7 24191208 24192543 + 0 NA Intergenic Intergenic 16196 ENSMUSG00000087598.9 ENSMUSG00000087598 ENSMUST00000142218 Zfp111 protein_coding Interval_132286 chr5 143941523 143941831 + 0 NA intron (ENSMUSG00000075569.10, intron 2 of 4) protein_coding-intron (ENSMUSG00000075569.10, intron 3 of 5) 13502 ENSMUSG00000104633.1 ENSMUSG00000104633 ENSMUST00000172367 Gm42421 protein_coding Interval_172465 chrX 20794212 20794796 + 0 NA Intergenic Intergenic 5932 ENSMUSG00000065314.1 ENSMUSG00000065314 ENSMUST00000083380 Gm26065 snRNA Interval_121507 chr5 3006202 3006465 + 0 NA Intergenic Intergenic -5281 ENSMUSG00000098947.2 ENSMUSG00000098947 ENSMUST00000183378 V1rg10 polymorphic_pseudogene Interval_115497 chr4 99475631 99475875 + 0 NA Intergenic Intergenic -44499 ENSMUSG00000081150.1 ENSMUSG00000081150 ENSMUST00000118675 Gm12684 processed_pseudogene Interval_50046 chr13 120185545 120186408 + 0 NA Intergenic Intergenic -8538 ENSMUSG00000114398.1 ENSMUSG00000114398 ENSMUST00000225106 Gm20763 processed_pseudogene Interval_165062 chr9 44239089 44239924 + 0 NA Intergenic Intergenic -1226 ENSMUSG00000070306.3 ENSMUSG00000070306 ENSMUST00000216047 Ccdc153 protein_coding Interval_100450 chr2 169071189 169072023 + 0 NA Intergenic Intergenic 10486 ENSMUSG00000080415.1 ENSMUSG00000080415 ENSMUST00000116765 Gm26469 miRNA Interval_100690 chr2 171629813 171631155 + 0 NA Intergenic Intergenic -324053 ENSMUSG00000088505.1 ENSMUSG00000088505 ENSMUST00000157880 Gm26489 scaRNA Interval_61998 chr15 85787014 85787277 + 0 NA exon (ENSMUSG00000022383.13, exon 4 of 8) protein_coding-exon (ENSMUSG00000022383.13, exon 4 of 8) 24514 ENSMUSG00000064284.12 ENSMUSG00000064284 ENSMUST00000154814 Cdpf1 protein_coding Interval_47855 chr13 93855769 93856374 + 0 NA intron (ENSMUSG00000042082.7, intron 4 of 5) protein_coding-intron (ENSMUSG00000042082.7, intron 4 of 7) 65294 ENSMUSG00000093480.1 ENSMUSG00000093480 ENSMUST00000176635 Mir5624 miRNA Interval_103003 chr3 34196886 34197335 + 0 NA intron (ENSMUSG00000105265.4, intron 1 of 2) processed_transcript-intron (ENSMUSG00000105265.4, intron 1 of 4) 246 ENSMUSG00000105265.4 ENSMUSG00000105265 ENSMUST00000197697 Sox2ot processed_transcript Interval_45397 chr13 54863785 54864711 + 0 NA Intergenic Intergenic -23222 ENSMUSG00000100728.1 ENSMUSG00000100728 ENSMUST00000189848 Gm29431 lincRNA Interval_103309 chr3 38454007 38455345 + 0 NA exon (ENSMUSG00000044864.16, exon 1 of 2) protein_coding-exon (ENSMUSG00000044864.16, exon 1 of 2) -11044 ENSMUSG00000105516.4 ENSMUSG00000105516 ENSMUST00000196546 Gm36823 lincRNA Interval_73922 chr17 45500824 45501610 + 0 NA Intergenic Intergenic -13012 ENSMUSG00000023938.8 ENSMUSG00000023938 ENSMUST00000232693 Aars2 protein_coding Interval_92894 chr2 68249725 68251134 + 0 NA intron (ENSMUSG00000027030.15, intron 1 of 2) protein_coding-intron (ENSMUSG00000027030.15, intron 16 of 17) 136252 ENSMUSG00000027030.15 ENSMUSG00000027030 ENSMUST00000149581 Stk39 protein_coding Interval_86761 chr19 43674386 43675979 + 0 NA promoter-TSS (ENSMUSG00000040414.8) protein_coding-promoter-TSS (ENSMUSG00000040414.8) 4 ENSMUSG00000117698.1 ENSMUSG00000117698 ENSMUST00000238165 BC037704 processed_transcript Interval_30253 chr11 92046898 92047155 + 0 NA Intergenic Intergenic -22613 ENSMUSG00000093113.1 ENSMUSG00000093113 ENSMUST00000175372 Gm22702 miRNA Interval_40961 chr12 110280182 110280769 + 0 NA exon (ENSMUSG00000075707.5, exon 1 of 1) protein_coding-exon (ENSMUSG00000075707.5, exon 1 of 1) 1407 ENSMUSG00000075707.5 ENSMUSG00000075707 ENSMUST00000097228 Dio3 protein_coding Interval_87756 chr19 55662346 55662555 + 0 NA Intergenic Intergenic -79814 ENSMUSG00000024985.20 ENSMUSG00000024985 ENSMUST00000148666 Tcf7l2 protein_coding Interval_43462 chr13 31403147 31403458 + 0 NA intron (ENSMUSG00000085620.2, intron 2 of 6) lincRNA-intron (ENSMUSG00000085620.2, intron 3 of 8) 5620 ENSMUSG00000085620.2 ENSMUSG00000085620 ENSMUST00000135656 G630018N14Rik lincRNA Interval_14140 chr10 28020381 28020821 + 0 NA Intergenic Intergenic 45589 ENSMUSG00000112432.1 ENSMUSG00000112432 ENSMUST00000218855 Gm18507 processed_pseudogene Interval_29097 chr11 80300477 80302888 + 0 NA intron (ENSMUSG00000017692.8, intron 1 of 8) protein_coding-intron (ENSMUSG00000017692.8, intron 1 of 8) -44721 ENSMUSG00000017692.8 ENSMUSG00000017692 ENSMUST00000157016 Rhbdl3 protein_coding Interval_7920 chr1 134589387 134590203 + 0 NA exon (ENSMUSG00000042207.17, exon 1 of 1) protein_coding-exon (ENSMUSG00000042207.17, exon 1 of 1) -33005 ENSMUSG00000042207.17 ENSMUSG00000042207 ENSMUST00000191572 Kdm5b protein_coding Interval_117652 chr4 125294766 125294971 + 0 NA Intergenic Intergenic 66271 ENSMUSG00000087010.1 ENSMUSG00000087010 ENSMUST00000130055 1700041M05Rik lincRNA Interval_146597 chr7 47159351 47159835 + 0 NA Intergenic Intergenic -15271 ENSMUSG00000109200.1 ENSMUSG00000109200 ENSMUST00000207829 Gm44969 lincRNA Interval_22179 chr11 6852820 6854322 + 0 NA Intergenic Intergenic 8733 ENSMUSG00000082333.1 ENSMUSG00000082333 ENSMUST00000118142 Gm11984 processed_pseudogene Interval_70782 chr17 14465146 14465382 + 0 NA intron (ENSMUSG00000116801.1, intron 1 of 4) lincRNA-intron (ENSMUSG00000116801.1, intron 1 of 4) 15693 ENSMUSG00000116801.1 ENSMUSG00000116801 ENSMUST00000232609 Gm38551 lincRNA Interval_26641 chr11 59397646 59398258 + 0 NA Intergenic Intergenic -22295 ENSMUSG00000049291.6 ENSMUSG00000049291 ENSMUST00000061481 Prss38 protein_coding Interval_173673 chrX 101734905 101735451 + 0 NA promoter-TSS (ENSMUSG00000050232.6) protein_coding-promoter-TSS (ENSMUSG00000050232.6) -909 ENSMUSG00000050232.6 ENSMUSG00000050232 ENSMUST00000056614 Cxcr3 protein_coding Interval_157736 chr8 72643013 72643294 + 0 NA Intergenic Intergenic -7141 ENSMUSG00000048148.18 ENSMUSG00000048148 ENSMUST00000162248 Nwd1 protein_coding Interval_59533 chr15 55098738 55099234 + 0 NA TTS (ENSMUSG00000053749.12) processed_transcript-TTS (ENSMUSG00000053749.12) -11229 ENSMUSG00000022422.13 ENSMUSG00000022422 ENSMUST00000143523 Dscc1 protein_coding Interval_155275 chr8 30035939 30036559 + 0 NA Intergenic Intergenic 45711 ENSMUSG00000109597.1 ENSMUSG00000109597 ENSMUST00000211611 Gm45492 processed_pseudogene Interval_100452 chr2 169079297 169079480 + 0 NA Intergenic Intergenic 18268 ENSMUSG00000080415.1 ENSMUSG00000080415 ENSMUST00000116765 Gm26469 miRNA Interval_27217 chr11 64186693 64187156 + 0 NA Intergenic Intergenic 22351 ENSMUSG00000087622.1 ENSMUSG00000087622 ENSMUST00000145095 Gm12290 lincRNA Interval_46966 chr13 73803826 73804239 + 0 NA promoter-TSS (ENSMUSG00000017756.9) protein_coding-promoter-TSS (ENSMUSG00000017756.9) -577 ENSMUSG00000017756.9 ENSMUSG00000017756 ENSMUST00000221813 Slc12a7 protein_coding Interval_75291 chr17 65723708 65727200 + 0 NA intron (ENSMUSG00000056515.9, intron 1 of 2) protein_coding-intron (ENSMUSG00000056515.9, intron 1 of 6) 47186 ENSMUSG00000056515.9 ENSMUSG00000056515 ENSMUST00000233258 Rab31 protein_coding Interval_112928 chr4 46131965 46132167 + 0 NA promoter-TSS (ENSMUSG00000035495.15) protein_coding-promoter-TSS (ENSMUSG00000035495.15) 6347 ENSMUSG00000035495.15 ENSMUSG00000035495 ENSMUST00000156021 Tstd2 protein_coding Interval_141554 chr6 129228707 129229393 + 0 NA intron (ENSMUSG00000097354.7, intron 2 of 3) lincRNA-intron (ENSMUSG00000097354.7, intron 1 of 2) 8941 ENSMUSG00000097354.7 ENSMUSG00000097354 ENSMUST00000204328 2310001H17Rik lincRNA Interval_147472 chr7 67566482 67567056 + 0 NA intron (ENSMUSG00000030556.13, intron 5 of 9) protein_coding-intron (ENSMUSG00000030556.13, intron 5 of 9) 3934 ENSMUSG00000087926.1 ENSMUSG00000087926 ENSMUST00000157301 Gm23233 snoRNA Interval_45658 chr13 56611855 56612931 + 0 NA intron (ENSMUSG00000035493.10, intron 1 of 16) protein_coding-intron (ENSMUSG00000035493.10, intron 1 of 16) 16856 ENSMUSG00000114604.1 ENSMUSG00000114604 ENSMUST00000224345 2010203P06Rik lincRNA Interval_89478 chr2 20915863 20916361 + 0 NA intron (ENSMUSG00000036591.16, intron 2 of 25) protein_coding-intron (ENSMUSG00000036591.16, intron 2 of 25) 15277 ENSMUSG00000085206.1 ENSMUSG00000085206 ENSMUST00000124322 Gm13380 sense_intronic Interval_154594 chr8 21906530 21906833 + 0 NA promoter-TSS (ENSMUSG00000045337.4) protein_coding-promoter-TSS (ENSMUSG00000045337.4) 17 ENSMUSG00000110616.1 ENSMUSG00000110616 ENSMUST00000212313 Gm36879 antisense Interval_30687 chr11 95904157 95904556 + 0 NA intron (ENSMUSG00000013418.8, intron 1 of 10) protein_coding-intron (ENSMUSG00000013418.8, intron 1 of 10) 10535 ENSMUSG00000013418.8 ENSMUSG00000013418 ENSMUST00000038343 B4galnt2 protein_coding Interval_20245 chr10 116406724 116407672 + 0 NA Intergenic Intergenic -10854 ENSMUSG00000020164.7 ENSMUSG00000020164 ENSMUST00000134586 Kcnmb4os1 antisense Interval_121713 chr5 5630797 5631122 + 0 NA intron (ENSMUSG00000040473.15, intron 6 of 18) protein_coding-intron (ENSMUSG00000040473.15, intron 6 of 22) -8780 ENSMUSG00000040473.15 ENSMUSG00000040473 ENSMUST00000148193 Cfap69 protein_coding Interval_136406 chr6 54177559 54178364 + 0 NA promoter-TSS (ENSMUSG00000080205.2) processed_pseudogene-promoter-TSS (ENSMUSG00000080205.2) -278 ENSMUSG00000080205.2 ENSMUSG00000080205 ENSMUST00000112504 Gm15526 processed_pseudogene Interval_72944 chr17 33695790 33696328 + 0 NA TTS (ENSMUSG00000079557.11) protein_coding-TTS (ENSMUSG00000079557.11) -10658 ENSMUSG00000059208.15 ENSMUSG00000059208 ENSMUST00000127598 Hnrnpm protein_coding Interval_157117 chr8 65442209 65442854 + 0 NA Intergenic Intergenic 75230 ENSMUSG00000064905.1 ENSMUSG00000064905 ENSMUST00000082971 Gm25403 misc_RNA Interval_134467 chr6 28948755 28950383 + 0 NA Intergenic Intergenic -32065 ENSMUSG00000092090.2 ENSMUSG00000092090 ENSMUST00000164104 Gm3294 lincRNA Interval_119430 chr4 137593036 137594955 + 0 NA promoter-TSS (ENSMUSG00000043411.15) protein_coding-promoter-TSS (ENSMUSG00000043411.15) -11891 ENSMUSG00000094035.3 ENSMUSG00000094035 ENSMUST00000238941 Ldlrad2 protein_coding Interval_26901 chr11 61446900 61448150 + 0 NA TTS (ENSMUSG00000010086.17) protein_coding-TTS (ENSMUSG00000010086.17) 6606 ENSMUSG00000010086.17 ENSMUSG00000010086 ENSMUST00000130648 Rnf112 protein_coding Interval_88776 chr2 10574979 10575282 + 0 NA intron (ENSMUSG00000061186.15, intron 18 of 22) protein_coding-intron (ENSMUSG00000061186.15, intron 17 of 22) 56975 ENSMUSG00000080594.1 ENSMUSG00000080594 ENSMUST00000116944 Mir669h miRNA Interval_90529 chr2 30981666 30982624 + 0 NA promoter-TSS (ENSMUSG00000026851.9) protein_coding-promoter-TSS (ENSMUSG00000026851.9) 56 ENSMUSG00000026851.9 ENSMUSG00000026851 ENSMUST00000156325 BC005624 protein_coding Interval_116576 chr4 115830935 115832721 + 0 NA TTS (ENSMUSG00000028709.3) protein_coding-TTS (ENSMUSG00000028709.3) 3170 ENSMUSG00000028709.3 ENSMUSG00000028709 ENSMUST00000148409 Mob3c protein_coding Interval_112725 chr4 44424993 44425894 + 0 NA Intergenic Intergenic -12848 ENSMUSG00000077587.1 ENSMUSG00000077587 ENSMUST00000104399 Gm24376 snoRNA Interval_75603 chr17 69242516 69242702 + 0 NA intron (ENSMUSG00000024044.19, intron 5 of 21) protein_coding-intron (ENSMUSG00000024044.19, intron 5 of 21) 34599 ENSMUSG00000100572.1 ENSMUSG00000100572 ENSMUST00000187090 2410021H03Rik antisense Interval_56008 chr14 104071457 104072420 + 0 NA Intergenic Intergenic -44796 ENSMUSG00000115727.1 ENSMUSG00000115727 ENSMUST00000227414 4930432J09Rik lincRNA Interval_50168 chr14 8459394 8460970 + 0 NA intron (ENSMUSG00000021747.12, intron 14 of 15) protein_coding-intron (ENSMUSG00000021747.12, intron 14 of 15) 51265 ENSMUSG00000114533.1 ENSMUSG00000114533 ENSMUST00000224382 Gm8416 processed_pseudogene Interval_80232 chr18 38428620 38428845 + 0 NA intron (ENSMUSG00000024425.4, intron 1 of 2) protein_coding-intron (ENSMUSG00000024425.4, intron 1 of 7) -15448 ENSMUSG00000117986.1 ENSMUSG00000117986 ENSMUST00000235696 Gm50344 processed_pseudogene Interval_50313 chr14 11797807 11797986 + 0 NA intron (ENSMUSG00000021745.14, intron 2 of 3) protein_coding-intron (ENSMUSG00000021745.14, intron 2 of 29) 29953 ENSMUSG00000114310.1 ENSMUSG00000114310 ENSMUST00000225152 Gm48602 TEC Interval_43826 chr13 37433025 37434432 + 0 NA intron (ENSMUSG00000100760.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000100760.1, intron 1 of 2) 1421 ENSMUSG00000100760.1 ENSMUSG00000100760 ENSMUST00000190684 Gm4035 lincRNA Interval_165374 chr9 46863590 46864262 + 0 NA Intergenic Intergenic 33587 ENSMUSG00000111236.1 ENSMUSG00000111236 ENSMUST00000215504 Gm31614 lincRNA Interval_136527 chr6 55169085 55170523 + 0 NA TTS (ENSMUSG00000003477.5) protein_coding-TTS (ENSMUSG00000003477.5) 5210 ENSMUSG00000003477.5 ENSMUSG00000003477 ENSMUST00000152720 Inmt protein_coding Interval_112559 chr4 43122703 43123509 + 0 NA intron (ENSMUSG00000028456.18, intron 1 of 6) protein_coding-intron (ENSMUSG00000028456.18, intron 7 of 38) 13522 ENSMUSG00000077552.1 ENSMUSG00000077552 ENSMUST00000104364 Gm23709 snoRNA Interval_139296 chr6 98005706 98005968 + 0 NA intron (ENSMUSG00000035158.15, intron 5 of 8) protein_coding-intron (ENSMUSG00000035158.15, intron 5 of 8) 13916 ENSMUSG00000035158.15 ENSMUSG00000035158 ENSMUST00000203938 Mitf protein_coding Interval_170016 chr9 103657371 103657747 + 0 NA intron (ENSMUSG00000042757.16, intron 2 of 3) protein_coding-intron (ENSMUSG00000042757.16, intron 1 of 4) -57395 ENSMUSG00000102441.1 ENSMUSG00000102441 ENSMUST00000195052 Gm38032 TEC Interval_5295 chr1 87309167 87309834 + 0 NA intron (ENSMUSG00000026255.15, intron 1 of 1) protein_coding-intron (ENSMUSG00000026255.15, intron 3 of 3) 274 ENSMUSG00000026255.15 ENSMUSG00000026255 ENSMUST00000150831 Efhd1 protein_coding Interval_70099 chr17 5308127 5308635 + 0 NA intron (ENSMUSG00000069729.14, intron 9 of 19) protein_coding-intron (ENSMUSG00000069729.14, intron 9 of 18) -80382 ENSMUSG00000101133.1 ENSMUSG00000101133 ENSMUST00000190732 Gm29050 antisense Interval_26551 chr11 58778528 58778986 + 0 NA exon (ENSMUSG00000056959.6, exon 1 of 1) protein_coding-exon (ENSMUSG00000056959.6, exon 1 of 1) -4195 ENSMUSG00000059504.7 ENSMUSG00000059504 ENSMUST00000076393 Olfr314 protein_coding Interval_100840 chr2 172831176 172832004 + 0 NA Intergenic Intergenic 32751 ENSMUSG00000093160.1 ENSMUSG00000093160 ENSMUST00000175419 Gm22773 miRNA Interval_59246 chr15 49671227 49671978 + 0 NA Intergenic Intergenic 133407 ENSMUSG00000065760.1 ENSMUSG00000065760 ENSMUST00000083826 Gm23848 snRNA Interval_47055 chr13 74883345 74883705 + 0 NA Intergenic Intergenic 19220 ENSMUSG00000086743.2 ENSMUSG00000086743 ENSMUST00000129154 Hnrnpa1l2-ps processed_pseudogene Interval_7783 chr1 133660637 133661738 + 0 NA promoter-TSS (ENSMUSG00000102976.6) protein_coding-promoter-TSS (ENSMUSG00000102976.6) 131 ENSMUSG00000094410.8 ENSMUSG00000094410 ENSMUST00000179598 Gm38394 protein_coding Interval_144878 chr7 28726542 28726818 + 0 NA intron (ENSMUSG00000030598.15, intron 2 of 6) protein_coding-intron (ENSMUSG00000030598.15, intron 2 of 6) -5820 ENSMUSG00000030598.15 ENSMUSG00000030598 ENSMUST00000167118 Fbxo17 protein_coding Interval_89110 chr2 16571305 16572298 + 0 NA intron (ENSMUSG00000026748.13, intron 3 of 12) protein_coding-intron (ENSMUSG00000026748.13, intron 4 of 13) -66895 ENSMUSG00000026748.13 ENSMUSG00000026748 ENSMUST00000126173 Plxdc2 protein_coding Interval_101880 chr3 10357354 10357653 + 0 NA Intergenic Intergenic -6186 ENSMUSG00000039795.14 ENSMUSG00000039795 ENSMUST00000127313 Zfand1 protein_coding Interval_72567 chr17 30705618 30706318 + 0 NA intron (ENSMUSG00000033826.10, intron 25 of 90) protein_coding-intron (ENSMUSG00000033826.10, intron 27 of 92) 35328 ENSMUSG00000033826.10 ENSMUSG00000033826 ENSMUST00000235567 Dnah8 protein_coding Interval_130419 chr5 127481428 127482281 + 0 NA intron (ENSMUSG00000034324.16, intron 3 of 8) protein_coding-intron (ENSMUSG00000034324.16, intron 3 of 8) -71400 ENSMUSG00000034324.16 ENSMUSG00000034324 ENSMUST00000145748 Tmem132c protein_coding Interval_81409 chr18 60586965 60587235 + 0 NA intron (ENSMUSG00000049173.8, intron 2 of 6) protein_coding-intron (ENSMUSG00000049173.8, intron 2 of 6) 4688 ENSMUSG00000049173.8 ENSMUSG00000049173 ENSMUST00000056533 Myoz3 protein_coding Interval_4833 chr1 80000167 80000378 + 0 NA Intergenic Intergenic 42692 ENSMUSG00000100397.1 ENSMUSG00000100397 ENSMUST00000190355 Gm28071 processed_pseudogene Interval_131974 chr5 141650329 141650586 + 0 NA intron (ENSMUSG00000039683.16, intron 4 of 9) protein_coding-intron (ENSMUSG00000039683.16, intron 4 of 44) -34455 ENSMUSG00000085540.1 ENSMUSG00000085540 ENSMUST00000150385 Gm16036 antisense Interval_57700 chr15 16121429 16121974 + 0 NA Intergenic Intergenic 86252 ENSMUSG00000115434.1 ENSMUSG00000115434 ENSMUST00000227564 Gm6479 processed_pseudogene Interval_173745 chrX 103427703 103428478 + 0 NA intron (ENSMUSG00000098078.1, intron 1 of 1) protein_coding-intron (ENSMUSG00000098078.1, intron 1 of 1) 6080 ENSMUSG00000098078.1 ENSMUSG00000098078 ENSMUST00000182089 Gm26992 protein_coding Interval_135120 chr6 35758034 35758313 + 0 NA Intergenic Intergenic -142504 ENSMUSG00000107110.1 ENSMUSG00000107110 ENSMUST00000201009 Gm42931 lincRNA Interval_113902 chr4 59752495 59753048 + 0 NA exon (ENSMUSG00000045071.14, exon 4 of 4) protein_coding-exon (ENSMUSG00000045071.14, exon 4 of 4) 19513 ENSMUSG00000045071.14 ENSMUSG00000045071 ENSMUST00000221633 E130308A19Rik protein_coding Interval_71898 chr17 26866445 26867139 + 0 NA intron (ENSMUSG00000078838.3, intron 1 of 2) lincRNA-intron (ENSMUSG00000078838.3, intron 1 of 1) 5371 ENSMUSG00000092539.2 ENSMUSG00000092539 ENSMUST00000172664 Gm20468 lincRNA Interval_20910 chr10 121944348 121945859 + 0 NA intron (ENSMUSG00000020121.15, intron 1 of 3) protein_coding-intron (ENSMUSG00000020121.15, intron 1 of 21) 102212 ENSMUSG00000020121.15 ENSMUSG00000020121 ENSMUST00000162710 Srgap1 protein_coding Interval_121387 chr4 155450858 155452301 + 0 NA promoter-TSS (ENSMUSG00000078490.10) protein_coding-promoter-TSS (ENSMUSG00000078490.10) -17535 ENSMUSG00000023153.9 ENSMUSG00000023153 ENSMUST00000145796 Tmem52 protein_coding Interval_163444 chr9 21468670 21469747 + 0 NA intron (ENSMUSG00000033335.17, intron 4 of 19) protein_coding-intron (ENSMUSG00000033335.17, intron 4 of 20) 27356 ENSMUSG00000065547.1 ENSMUSG00000065547 ENSMUST00000083613 Mir199a-1 miRNA Interval_151786 chr7 126666875 126667909 + 0 NA intron (ENSMUSG00000030714.14, intron 3 of 7) protein_coding-intron (ENSMUSG00000030714.14, intron 4 of 9) 6320 ENSMUSG00000030714.14 ENSMUSG00000030714 ENSMUST00000123382 Sgf29 protein_coding Interval_133906 chr6 14790928 14791142 + 0 NA Intergenic Intergenic -35761 ENSMUSG00000042717.5 ENSMUSG00000042717 ENSMUST00000045096 Ppp1r3a protein_coding Interval_109931 chr3 151907666 151908268 + 0 NA Intergenic Intergenic 18442 ENSMUSG00000087997.1 ENSMUSG00000087997 ENSMUST00000157372 Gm25056 snRNA Interval_117935 chr4 127179060 127180091 + 0 NA intron (ENSMUSG00000042388.14, intron 1 of 11) protein_coding-intron (ENSMUSG00000042388.14, intron 1 of 11) -23731 ENSMUSG00000042388.14 ENSMUSG00000042388 ENSMUST00000137062 Dlgap3 protein_coding Interval_36839 chr12 54566647 54567234 + 0 NA Intergenic Intergenic -49861 ENSMUSG00000113947.1 ENSMUSG00000113947 ENSMUST00000223133 Gm10465 lincRNA Interval_83851 chr19 5087802 5088899 + 0 NA promoter-TSS (ENSMUSG00000024875.5) protein_coding-promoter-TSS (ENSMUSG00000024875.5) -195 ENSMUSG00000024875.5 ENSMUSG00000024875 ENSMUST00000236687 Yif1a protein_coding Interval_99258 chr2 158461685 158461960 + 0 NA intron (ENSMUSG00000027652.15, intron 13 of 24) protein_coding-intron (ENSMUSG00000027652.15, intron 18 of 29) 6538 ENSMUSG00000081800.3 ENSMUSG00000081800 ENSMUST00000122256 Gm14200 processed_pseudogene Interval_46322 chr13 63943013 63944840 + 0 NA Intergenic Intergenic 2595 ENSMUSG00000113340.1 ENSMUSG00000113340 ENSMUST00000220900 Gm7695 processed_pseudogene Interval_78428 chr18 12762999 12763861 + 0 NA intron (ENSMUSG00000044252.18, intron 8 of 13) protein_coding-intron (ENSMUSG00000044252.18, intron 22 of 27) -20171 ENSMUSG00000083332.1 ENSMUSG00000083332 ENSMUST00000121453 Gm7599 processed_pseudogene Interval_96976 chr2 130207108 130208743 + 0 NA intron (ENSMUSG00000060332.9, intron 2 of 18) protein_coding-intron (ENSMUSG00000060332.9, intron 3 of 19) 11382 ENSMUSG00000060332.9 ENSMUSG00000060332 ENSMUST00000166774 Tmc2 protein_coding Interval_132527 chr5 145759154 145759508 + 0 NA Intergenic Intergenic -1214 ENSMUSG00000105661.1 ENSMUSG00000105661 ENSMUST00000198575 Gm43626 processed_pseudogene Interval_42493 chr13 14079535 14080758 + 0 NA intron (ENSMUSG00000039219.18, intron 1 of 8) protein_coding-intron (ENSMUSG00000039219.18, intron 2 of 22) -7293 ENSMUSG00000064653.1 ENSMUSG00000064653 ENSMUST00000082719 Gm26129 snRNA Interval_104038 chr3 57603928 57604866 + 0 NA Intergenic Intergenic -12212 ENSMUSG00000098401.1 ENSMUSG00000098401 ENSMUST00000183760 Mir6377 miRNA Interval_41837 chr13 3216029 3216338 + 0 NA Intergenic Intergenic -57094 ENSMUSG00000113271.1 ENSMUSG00000113271 ENSMUST00000222272 Gm40653 lincRNA Interval_144130 chr7 19564492 19565131 + 0 NA TTS (ENSMUSG00000044709.6) protein_coding-TTS (ENSMUSG00000044709.6) 12784 ENSMUSG00000044709.6 ENSMUSG00000044709 ENSMUST00000151646 Gemin7 protein_coding Interval_90320 chr2 29764451 29765287 + 0 NA TTS (ENSMUSG00000075425.10) protein_coding-TTS (ENSMUSG00000075425.10) 5557 ENSMUSG00000075425.10 ENSMUSG00000075425 ENSMUST00000113809 Gm13547 protein_coding Interval_160466 chr8 109750010 109751017 + 0 NA Intergenic Intergenic -18400 ENSMUSG00000069895.4 ENSMUSG00000069895 ENSMUST00000212726 Atxn1l protein_coding Interval_153658 chr8 4341649 4343240 + 0 NA intron (ENSMUSG00000023235.14, intron 2 of 5) protein_coding-intron (ENSMUSG00000023235.14, intron 2 of 2) 10185 ENSMUSG00000023235.14 ENSMUSG00000023235 ENSMUST00000024004 Ccl25 protein_coding Interval_129342 chr5 119304507 119305140 + 0 NA Intergenic Intergenic 7578 ENSMUSG00000084548.1 ENSMUSG00000084548 ENSMUST00000122599 n-R5s175 rRNA Interval_152142 chr7 130066889 130067597 + 0 NA Intergenic Intergenic 32149 ENSMUSG00000065763.1 ENSMUSG00000065763 ENSMUST00000083829 Gm23847 snRNA Interval_4021 chr1 66671633 66671825 + 0 NA intron (ENSMUSG00000055567.18, intron 52 of 63) protein_coding-intron (ENSMUSG00000055567.18, intron 53 of 64) 20627 ENSMUSG00000103375.1 ENSMUSG00000103375 ENSMUST00000192513 Gm37181 TEC Interval_7938 chr1 134659465 134659902 + 0 NA intron (ENSMUSG00000026452.15, intron 1 of 2) protein_coding-intron (ENSMUSG00000026452.15, intron 1 of 2) 13002 ENSMUSG00000026452.15 ENSMUSG00000026452 ENSMUST00000187702 Syt2 protein_coding Interval_104633 chr3 68979291 68979625 + 0 NA intron (ENSMUSG00000027778.15, intron 5 of 5) protein_coding-intron (ENSMUSG00000027778.15, intron 4 of 18) 25067 ENSMUSG00000027778.15 ENSMUSG00000027778 ENSMUST00000192467 Ift80 protein_coding Interval_88813 chr2 11394946 11395637 + 0 NA intron (ENSMUSG00000102674.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000102674.1, intron 1 of 2) 3210 ENSMUSG00000102674.1 ENSMUSG00000102674 ENSMUST00000192626 8030442B05Rik lincRNA Interval_42872 chr13 20884209 20884413 + 0 NA intron (ENSMUSG00000021322.8, intron 4 of 20) protein_coding-intron (ENSMUSG00000021322.8, intron 4 of 20) 39557 ENSMUSG00000088989.1 ENSMUSG00000088989 ENSMUST00000158364 Gm25605 snRNA Interval_170011 chr9 103624190 103625013 + 0 NA intron (ENSMUSG00000042757.16, intron 2 of 3) protein_coding-intron (ENSMUSG00000042757.16, intron 1 of 4) -24437 ENSMUSG00000102441.1 ENSMUSG00000102441 ENSMUST00000195052 Gm38032 TEC Interval_58047 chr15 27421238 27422483 + 0 NA Intergenic Intergenic 41589 ENSMUSG00000115138.1 ENSMUSG00000115138 ENSMUST00000227384 Gm36899 lincRNA Interval_105402 chr3 86001905 86003325 + 0 NA promoter-TSS (ENSMUSG00000049013.3) protein_coding-promoter-TSS (ENSMUSG00000049013.3) -124 ENSMUSG00000049013.3 ENSMUSG00000049013 ENSMUST00000061343 Prss48 protein_coding Interval_117941 chr4 127213515 127216500 + 0 NA TTS (ENSMUSG00000042388.14) protein_coding-TTS (ENSMUSG00000042388.14) 11701 ENSMUSG00000042388.14 ENSMUSG00000042388 ENSMUST00000137062 Dlgap3 protein_coding Interval_173794 chrX 104347838 104348378 + 0 NA exon (ENSMUSG00000083327.1, exon 1 of 1) processed_pseudogene-exon (ENSMUSG00000083327.1, exon 1 of 1) 126 ENSMUSG00000083327.1 ENSMUSG00000083327 ENSMUST00000120233 Vcp-rs processed_pseudogene Interval_126786 chr5 92924543 92925558 + 0 NA promoter-TSS (ENSMUSG00000029381.16) protein_coding-promoter-TSS (ENSMUSG00000029381.16) 68579 ENSMUSG00000029381.16 ENSMUSG00000029381 ENSMUST00000172752 Shroom3 protein_coding Interval_112323 chr4 40484810 40485523 + 0 NA intron (ENSMUSG00000086355.1, intron 5 of 6) lincRNA-intron (ENSMUSG00000086355.1, intron 5 of 6) 12036 ENSMUSG00000046593.3 ENSMUSG00000046593 ENSMUST00000179526 Tmem215 protein_coding Interval_171379 chr9 117182050 117182665 + 0 NA intron (ENSMUSG00000039607.17, intron 1 of 13) protein_coding-intron (ENSMUSG00000039607.17, intron 1 of 12) -70179 ENSMUSG00000079669.2 ENSMUSG00000079669 ENSMUST00000172075 Gm17396 processed_transcript Interval_164571 chr9 38964584 38965641 + 0 NA Intergenic Intergenic -7201 ENSMUSG00000058515.4 ENSMUSG00000058515 ENSMUST00000075680 Olfr933 protein_coding Interval_125561 chr5 71319206 71319671 + 0 NA Intergenic Intergenic -224238 ENSMUSG00000000560.9 ENSMUSG00000000560 ENSMUST00000199012 Gabra2 protein_coding Interval_36391 chr12 43204394 43205163 + 0 NA Intergenic Intergenic -101365 ENSMUSG00000112904.1 ENSMUSG00000112904 ENSMUST00000217732 Gm47030 lincRNA Interval_20913 chr10 121966922 121967333 + 0 NA intron (ENSMUSG00000020121.15, intron 1 of 3) protein_coding-intron (ENSMUSG00000020121.15, intron 1 of 21) 80188 ENSMUSG00000020121.15 ENSMUSG00000020121 ENSMUST00000162710 Srgap1 protein_coding Interval_81349 chr18 58741626 58742347 + 0 NA Intergenic Intergenic -36439 ENSMUSG00000118337.1 ENSMUSG00000118337 ENSMUST00000235435 Gm50227 lincRNA Interval_101295 chr2 180222093 180222808 + 0 NA intron (ENSMUSG00000015647.9, intron 1 of 78) protein_coding-intron (ENSMUSG00000015647.9, intron 1 of 78) -34929 ENSMUSG00000039001.12 ENSMUSG00000039001 ENSMUST00000145043 Rps21 protein_coding Interval_147830 chr7 73885693 73885909 + 0 NA Intergenic Intergenic 61733 ENSMUSG00000108375.1 ENSMUSG00000108375 ENSMUST00000205875 Gm45003 TEC Interval_82762 chr18 76872134 76872907 + 0 NA intron (ENSMUSG00000091519.1, intron 4 of 8) protein_coding-intron (ENSMUSG00000091519.1, intron 4 of 8) 16115 ENSMUSG00000091519.1 ENSMUSG00000091519 ENSMUST00000166956 Skor2 protein_coding Interval_70601 chr17 12235470 12235696 + 0 NA intron (ENSMUSG00000014426.9, intron 21 of 25) protein_coding-intron (ENSMUSG00000014426.9, intron 22 of 26) -44534 ENSMUSG00000117325.1 ENSMUSG00000117325 ENSMUST00000233669 Gm49962 processed_pseudogene Interval_15126 chr10 42706672 42706923 + 0 NA Intergenic Intergenic -8279 ENSMUSG00000086434.1 ENSMUSG00000086434 ENSMUST00000149950 Gm15200 antisense Interval_105611 chr3 88104800 88105195 + 0 NA promoter-TSS (ENSMUSG00000028068.14) protein_coding-promoter-TSS (ENSMUSG00000028068.14) 22969 ENSMUSG00000028068.14 ENSMUSG00000028068 ENSMUST00000194772 Iqgap3 protein_coding Interval_76190 chr17 76585867 76586076 + 0 NA Intergenic Intergenic 235519 ENSMUSG00000117498.1 ENSMUSG00000117498 ENSMUST00000234836 Gm18366 processed_pseudogene Interval_105822 chr3 89519662 89521039 + 0 NA exon (ENSMUSG00000000794.9, exon 1 of 8) protein_coding-exon (ENSMUSG00000000794.9, exon 1 of 8) 65809 ENSMUSG00000027952.16 ENSMUSG00000027952 ENSMUST00000184515 Pmvk protein_coding Interval_98100 chr2 148052746 148053938 + 0 NA TTS (ENSMUSG00000099304.1) miRNA-TTS (ENSMUSG00000099304.1) 218 ENSMUSG00000099304.1 ENSMUSG00000099304 ENSMUST00000183823 Gm27420 miRNA Interval_92617 chr2 61567841 61568295 + 0 NA Intergenic Intergenic 75302 ENSMUSG00000088340.1 ENSMUSG00000088340 ENSMUST00000157715 Gm22338 snoRNA Interval_59418 chr15 52843610 52845645 + 0 NA Intergenic Intergenic -58360 ENSMUSG00000115137.1 ENSMUSG00000115137 ENSMUST00000228167 Gm34794 lincRNA Interval_17405 chr10 76403305 76404936 + 0 NA intron (ENSMUSG00000001151.10, intron 7 of 29) protein_coding-intron (ENSMUSG00000001151.10, intron 19 of 41) 12792 ENSMUSG00000001151.10 ENSMUSG00000001151 ENSMUST00000219701 Pcnt protein_coding Interval_111467 chr4 21856765 21857067 + 0 NA intron (ENSMUSG00000028248.15, intron 2 of 9) protein_coding-intron (ENSMUSG00000028248.15, intron 2 of 11) 8868 ENSMUSG00000028248.15 ENSMUSG00000028248 ENSMUST00000133241 Pnisr protein_coding Interval_230 KV575242.1 157747 159286 + 0 NA NA NA NA NA Interval_161211 chr8 118679365 118680204 + 0 NA intron (ENSMUSG00000031841.19, intron 3 of 7) protein_coding-intron (ENSMUSG00000031841.19, intron 3 of 13) -47116 ENSMUSG00000087707.1 ENSMUSG00000087707 ENSMUST00000157082 Gm22999 snoRNA Interval_67297 chr16 45695005 45695223 + 0 NA Intergenic Intergenic -8614 ENSMUSG00000033177.13 ENSMUSG00000033177 ENSMUST00000178323 Tmprss7 protein_coding Interval_166964 chr9 64183875 64184904 + 0 NA Intergenic Intergenic 3867 ENSMUSG00000004936.8 ENSMUSG00000004936 ENSMUST00000152535 Map2k1 protein_coding Interval_44692 chr13 47199573 47199849 + 0 NA intron (ENSMUSG00000038068.15, intron 1 of 7) protein_coding-intron (ENSMUSG00000038068.15, intron 1 of 7) 5886 ENSMUSG00000038068.15 ENSMUSG00000038068 ENSMUST00000110111 Rnf144b protein_coding Interval_151430 chr7 122367728 122368127 + 0 NA intron (ENSMUSG00000052889.11, intron 2 of 17) protein_coding-intron (ENSMUSG00000052889.11, intron 2 of 16) 5927 ENSMUSG00000108522.1 ENSMUSG00000108522 ENSMUST00000206841 Gm44664 TEC Interval_64533 chr16 13140927 13141309 + 0 NA intron (ENSMUSG00000022545.13, intron 1 of 1) protein_coding-intron (ENSMUSG00000022545.13, intron 9 of 10) 8727 ENSMUSG00000022545.13 ENSMUSG00000022545 ENSMUST00000156393 Ercc4 protein_coding Interval_67017 chr16 40616213 40617236 + 0 NA intron (ENSMUSG00000061080.11, intron 2 of 2) protein_coding-intron (ENSMUSG00000061080.11, intron 1 of 8) -248787 ENSMUSG00000098472.1 ENSMUSG00000098472 ENSMUST00000184367 Gm27887 miRNA Interval_152239 chr7 130860077 130861258 + 0 NA TTS (ENSMUSG00000086108.2) antisense-TTS (ENSMUSG00000086108.2) 5663 ENSMUSG00000086108.2 ENSMUSG00000086108 ENSMUST00000146366 Gm5602 antisense Interval_173560 chrX 99413275 99414206 + 0 NA intron (ENSMUSG00000085053.1, intron 1 of 3) lincRNA-intron (ENSMUSG00000085053.1, intron 1 of 3) 5155 ENSMUSG00000085053.1 ENSMUSG00000085053 ENSMUST00000152025 Gm14809 lincRNA Interval_14404 chr10 33028791 33029037 + 0 NA Intergenic Intergenic -51640 ENSMUSG00000019787.9 ENSMUSG00000019787 ENSMUST00000219000 Trdn protein_coding Interval_10791 chr1 174921203 174922181 + 0 NA exon (ENSMUSG00000050069.3, exon 1 of 2) protein_coding-exon (ENSMUSG00000050069.3, exon 1 of 2) 127 ENSMUSG00000050069.3 ENSMUSG00000050069 ENSMUST00000055294 Grem2 protein_coding Interval_15125 chr10 42696773 42697583 + 0 NA TTS (ENSMUSG00000086434.1) antisense-TTS (ENSMUSG00000086434.1) 1340 ENSMUSG00000086434.1 ENSMUSG00000086434 ENSMUST00000149950 Gm15200 antisense Interval_54707 chr14 73494194 73494599 + 0 NA TTS (ENSMUSG00000115530.1) processed_pseudogene-TTS (ENSMUSG00000115530.1) 1303 ENSMUSG00000115530.1 ENSMUSG00000115530 ENSMUST00000226353 Gm4266 processed_pseudogene Interval_6647 chr1 118515894 118516892 + 0 NA intron (ENSMUSG00000064302.13, intron 1 of 10) protein_coding-intron (ENSMUSG00000064302.13, intron 19 of 39) 3676 ENSMUSG00000064302.13 ENSMUSG00000064302 ENSMUST00000187575 Clasp1 protein_coding Interval_112479 chr4 41502256 41503363 + 0 NA promoter-TSS (ENSMUSG00000046312.4) protein_coding-promoter-TSS (ENSMUSG00000046312.4) -141 ENSMUSG00000046312.4 ENSMUSG00000046312 ENSMUST00000149596 Myorg protein_coding Interval_29778 chr11 86737706 86739200 + 0 NA intron (ENSMUSG00000047126.17, intron 1 of 31) protein_coding-intron (ENSMUSG00000047126.17, intron 1 of 31) -11970 ENSMUSG00000047126.17 ENSMUSG00000047126 ENSMUST00000133501 Cltc protein_coding Interval_39414 chr12 87274946 87276801 + 0 NA Intergenic Intergenic 9015 ENSMUSG00000106561.1 ENSMUSG00000106561 ENSMUST00000198146 Gm47293 miRNA Interval_27213 chr11 64146941 64148185 + 0 NA Intergenic Intergenic -17010 ENSMUSG00000087622.1 ENSMUSG00000087622 ENSMUST00000145095 Gm12290 lincRNA Interval_159975 chr8 105527148 105527517 + 0 NA intron (ENSMUSG00000013160.7, intron 4 of 7) protein_coding-intron (ENSMUSG00000013160.7, intron 4 of 7) 8577 ENSMUSG00000031891.6 ENSMUSG00000031891 ENSMUST00000034363 Hsd11b2 protein_coding Interval_146983 chr7 57081782 57082753 + 0 NA intron (ENSMUSG00000055026.13, intron 3 of 9) protein_coding-intron (ENSMUSG00000055026.13, intron 3 of 9) 56186 ENSMUSG00000108377.1 ENSMUSG00000108377 ENSMUST00000206642 Gm18642 processed_pseudogene Interval_89141 chr2 17216910 17217909 + 0 NA Intergenic Intergenic -31922 ENSMUSG00000085193.1 ENSMUSG00000085193 ENSMUST00000152803 Gm13322 lincRNA Interval_40347 chr12 104058791 104059151 + 0 NA Intergenic Intergenic -14528 ENSMUSG00000041567.3 ENSMUSG00000041567 ENSMUST00000043915 Serpina12 protein_coding Interval_130821 chr5 130944945 130945438 + 0 NA intron (ENSMUSG00000034040.16, intron 6 of 10) protein_coding-intron (ENSMUSG00000034040.16, intron 6 of 10) 14844 ENSMUSG00000107295.1 ENSMUSG00000107295 ENSMUST00000201249 Gm42896 TEC Interval_163301 chr9 20701808 20702326 + 0 NA intron (ENSMUSG00000032172.8, intron 1 of 5) protein_coding-intron (ENSMUSG00000032172.8, intron 1 of 5) 24870 ENSMUSG00000032172.8 ENSMUSG00000032172 ENSMUST00000215039 Olfm2 protein_coding Interval_128115 chr5 111060267 111060607 + 0 NA intron (ENSMUSG00000033209.17, intron 2 of 22) protein_coding-intron (ENSMUSG00000033209.17, intron 2 of 23) 31885 ENSMUSG00000105890.1 ENSMUSG00000105890 ENSMUST00000197083 Gm42780 TEC Interval_160158 chr8 106805569 106806104 + 0 NA intron (ENSMUSG00000041949.6, intron 15 of 17) protein_coding-intron (ENSMUSG00000041949.6, intron 15 of 17) -65000 ENSMUSG00000031910.14 ENSMUSG00000031910 ENSMUST00000175987 Has3 protein_coding Interval_134843 chr6 32215238 32215584 + 0 NA intron (ENSMUSG00000029765.12, intron 11 of 31) protein_coding-intron (ENSMUSG00000029765.12, intron 11 of 31) 9788 ENSMUSG00000029765.12 ENSMUSG00000029765 ENSMUST00000200732 Plxna4 protein_coding Interval_136723 chr6 58585786 58586428 + 0 NA exon (ENSMUSG00000029802.13, exon 3 of 3) protein_coding-exon (ENSMUSG00000029802.13, exon 3 of 3) -54475 ENSMUSG00000029802.13 ENSMUSG00000029802 ENSMUST00000134426 Abcg2 protein_coding Interval_173327 chrX 79758220 79758934 + 0 NA Intergenic Intergenic -122995 ENSMUSG00000046942.17 ENSMUSG00000046942 ENSMUST00000052283 Mageb16 protein_coding Interval_26159 chr11 54806375 54807511 + 0 NA Intergenic Intergenic -12976 ENSMUSG00000086789.1 ENSMUSG00000086789 ENSMUST00000154044 Lyrm7os antisense Interval_98762 chr2 154790241 154791972 + 0 NA promoter-TSS (ENSMUSG00000027593.15) protein_coding-promoter-TSS (ENSMUSG00000027593.15) -248 ENSMUSG00000027593.15 ENSMUSG00000027593 ENSMUST00000151578 Raly protein_coding Interval_71122 chr17 18889385 18890145 + 0 NA Intergenic Intergenic -24535 ENSMUSG00000091491.2 ENSMUSG00000091491 ENSMUST00000232219 Vmn2r97 protein_coding Interval_78303 chr18 11850375 11851565 + 0 NA intron (ENSMUSG00000040957.15, intron 1 of 8) protein_coding-intron (ENSMUSG00000040957.15, intron 1 of 8) 6670 ENSMUSG00000040957.15 ENSMUSG00000040957 ENSMUST00000225430 Cables1 protein_coding Interval_92084 chr2 53101866 53102068 + 0 NA intron (ENSMUSG00000036053.17, intron 11 of 26) protein_coding-intron (ENSMUSG00000036053.17, intron 11 of 26) 89220 ENSMUSG00000061136.16 ENSMUSG00000061136 ENSMUST00000132031 Prpf40a protein_coding Interval_48282 chr13 97701087 97701976 + 0 NA Intergenic Intergenic 45880 ENSMUSG00000054944.7 ENSMUSG00000054944 ENSMUST00000123535 5330416C01Rik lincRNA Interval_73766 chr17 43403793 43404628 + 0 NA intron (ENSMUSG00000056492.6, intron 2 of 4) protein_coding-intron (ENSMUSG00000056492.6, intron 2 of 20) 43759 ENSMUSG00000056492.6 ENSMUSG00000056492 ENSMUST00000225004 Adgrf5 protein_coding Interval_20488 chr10 117893142 117893449 + 0 NA Intergenic Intergenic -26580 ENSMUSG00000112711.1 ENSMUSG00000112711 ENSMUST00000217849 Gm32552 lincRNA Interval_7909 chr1 134524342 134525697 + 0 NA TTS (ENSMUSG00000101955.1) unprocessed_pseudogene-TTS (ENSMUSG00000101955.1) 5041 ENSMUSG00000101955.1 ENSMUSG00000101955 ENSMUST00000189357 Gm29376 unprocessed_pseudogene Interval_5956 chr1 93521299 93521690 + 0 NA intron (ENSMUSG00000034066.13, intron 1 of 12) protein_coding-intron (ENSMUSG00000034066.13, intron 1 of 26) 9382 ENSMUSG00000034066.13 ENSMUSG00000034066 ENSMUST00000122402 Farp2 protein_coding Interval_15614 chr10 52319269 52320099 + 0 NA exon (ENSMUSG00000019891.15, exon 11 of 11) protein_coding-exon (ENSMUSG00000019891.15, exon 11 of 11) 23973 ENSMUSG00000112550.1 ENSMUSG00000112550 ENSMUST00000218299 Gm6627 processed_pseudogene Interval_6271 chr1 105092264 105093007 + 0 NA Intergenic Intergenic -23819 ENSMUSG00000099669.1 ENSMUSG00000099669 ENSMUST00000187882 Gm29012 lincRNA Interval_168359 chr9 79582814 79583249 + 0 NA Intergenic Intergenic 9223 ENSMUSG00000111207.1 ENSMUSG00000111207 ENSMUST00000216602 Gm8125 processed_pseudogene Interval_85060 chr19 21920079 21920343 + 0 NA Intergenic Intergenic -17169 ENSMUSG00000045104.9 ENSMUSG00000045104 ENSMUST00000060477 Ldhb-ps processed_pseudogene Interval_103622 chr3 51253144 51253422 + 0 NA exon (ENSMUSG00000037174.18, exon 10 of 10) protein_coding-exon (ENSMUSG00000037174.18, exon 10 of 10) 9875 ENSMUSG00000023087.15 ENSMUSG00000023087 ENSMUST00000193018 Noct protein_coding Interval_156740 chr8 57762372 57763112 + 0 NA Intergenic Intergenic 62968 ENSMUSG00000110162.1 ENSMUSG00000110162 ENSMUST00000209274 Gm45356 lincRNA Interval_165470 chr9 48494902 48496332 + 0 NA promoter-TSS (ENSMUSG00000042396.10) protein_coding-promoter-TSS (ENSMUSG00000042396.10) 175 ENSMUSG00000042293.8 ENSMUSG00000042293 ENSMUST00000048824 Gm5617 protein_coding Interval_57622 chr15 12889736 12890287 + 0 NA intron (ENSMUSG00000022191.16, intron 20 of 34) protein_coding-intron (ENSMUSG00000022191.16, intron 20 of 34) 47915 ENSMUSG00000104911.1 ENSMUSG00000104911 ENSMUST00000198820 Gm47288 miRNA Interval_90545 chr2 31081083 31082016 + 0 NA intron (ENSMUSG00000075415.13, intron 4 of 5) protein_coding-intron (ENSMUSG00000075415.13, intron 6 of 13) 34763 ENSMUSG00000075415.13 ENSMUSG00000075415 ENSMUST00000136085 Fnbp1 protein_coding Interval_40595 chr12 105907823 105908699 + 0 NA Intergenic Intergenic 8420 ENSMUSG00000113835.1 ENSMUSG00000113835 ENSMUST00000220934 Gm19554 lincRNA Interval_19516 chr10 101583177 101584133 + 0 NA Intergenic Intergenic 39478 ENSMUSG00000087723.1 ENSMUSG00000087723 ENSMUST00000157098 Gm26278 snoRNA Interval_129154 chr5 117890985 117891467 + 0 NA intron (ENSMUSG00000029361.18, intron 2 of 27) protein_coding-intron (ENSMUSG00000029361.18, intron 3 of 28) 18413 ENSMUSG00000104071.1 ENSMUSG00000104071 ENSMUST00000194276 Gm37028 TEC Interval_45749 chr13 57603133 57603434 + 0 NA intron (ENSMUSG00000056222.15, intron 4 of 10) protein_coding-intron (ENSMUSG00000056222.15, intron 2 of 9) 305049 ENSMUSG00000056222.15 ENSMUSG00000056222 ENSMUST00000185905 Spock1 protein_coding Interval_113108 chr4 48391662 48392262 + 0 NA intron (ENSMUSG00000028344.12, intron 4 of 5) protein_coding-intron (ENSMUSG00000028344.12, intron 6 of 16) -46732 ENSMUSG00000081953.1 ENSMUSG00000081953 ENSMUST00000118949 Gm12435 processed_pseudogene Interval_48897 chr13 104540748 104542592 + 0 NA Intergenic Intergenic -143261 ENSMUSG00000084860.1 ENSMUSG00000084860 ENSMUST00000131215 2610204G07Rik antisense Interval_49651 chr13 113807465 113808177 + 0 NA intron (ENSMUSG00000042348.10, intron 1 of 3) protein_coding-intron (ENSMUSG00000042348.10, intron 1 of 4) 13228 ENSMUSG00000042348.10 ENSMUSG00000042348 ENSMUST00000224068 Arl15 protein_coding Interval_164165 chr9 32120846 32121604 + 0 NA intron (ENSMUSG00000041444.14, intron 1 of 21) protein_coding-intron (ENSMUSG00000041444.14, intron 1 of 21) 42944 ENSMUSG00000110840.1 ENSMUSG00000110840 ENSMUST00000214707 Gm47496 processed_pseudogene Interval_141957 chr6 135907282 135908776 + 0 NA intron (ENSMUSG00000030209.14, intron 5 of 5) protein_coding-intron (ENSMUSG00000030209.14, intron 4 of 13) 32524 ENSMUSG00000086614.2 ENSMUSG00000086614 ENSMUST00000155455 Gm14330 antisense Interval_139435 chr6 100163047 100163972 + 0 NA Intergenic Intergenic -19695 ENSMUSG00000107558.1 ENSMUSG00000107558 ENSMUST00000204605 2010109P13Rik TEC Interval_124874 chr5 58280882 58281659 + 0 NA Intergenic Intergenic -80363 ENSMUSG00000105269.1 ENSMUSG00000105269 ENSMUST00000198049 Gm42999 unprocessed_pseudogene Interval_122583 chr5 23935019 23935361 + 0 NA intron (ENSMUSG00000028995.14, intron 10 of 10) protein_coding-intron (ENSMUSG00000028995.14, intron 10 of 10) 49839 ENSMUSG00000028995.14 ENSMUSG00000028995 ENSMUST00000147179 Fam126a protein_coding Interval_147748 chr7 73333995 73334274 + 0 NA intron (ENSMUSG00000097756.2, intron 1 of 2) antisense-intron (ENSMUSG00000097756.2, intron 1 of 1) 23604 ENSMUSG00000108530.1 ENSMUSG00000108530 ENSMUST00000205600 4930429H19Rik lincRNA Interval_27577 chr11 68822191 68822485 + 0 NA exon (ENSMUSG00000018736.14, exon 9 of 9) protein_coding-exon (ENSMUSG00000018736.14, exon 9 of 9) 37658 ENSMUSG00000018736.14 ENSMUSG00000018736 ENSMUST00000127469 Ndel1 protein_coding Interval_102590 chr3 28037828 28038800 + 0 NA intron (ENSMUSG00000027695.16, intron 1 of 21) protein_coding-intron (ENSMUSG00000027695.16, intron 6 of 25) -40876 ENSMUSG00000027695.16 ENSMUSG00000027695 ENSMUST00000126594 Pld1 protein_coding Interval_99457 chr2 161349005 161349344 + 0 NA Intergenic Intergenic 17860 ENSMUSG00000087031.1 ENSMUSG00000087031 ENSMUST00000151260 Gm14241 lincRNA Interval_36853 chr12 54683300 54683990 + 0 NA intron (ENSMUSG00000054302.15, intron 4 of 6) protein_coding-intron (ENSMUSG00000054302.15, intron 2 of 2) -3836 ENSMUSG00000113392.1 ENSMUSG00000113392 ENSMUST00000223274 Gm36262 processed_pseudogene Interval_13021 chr10 9443594 9443800 + 0 NA Intergenic Intergenic 43505 ENSMUSG00000112307.1 ENSMUSG00000112307 ENSMUST00000218957 Gm48751 TEC Interval_119091 chr4 135499872 135500245 + 0 NA intron (ENSMUSG00000028801.14, intron 1 of 8) protein_coding-intron (ENSMUSG00000028801.14, intron 1 of 8) 5268 ENSMUSG00000028801.14 ENSMUSG00000028801 ENSMUST00000063707 Stpg1 protein_coding Interval_112623 chr4 43662056 43662351 + 0 NA TTS (ENSMUSG00000043633.6) protein_coding-TTS (ENSMUSG00000043633.6) -1840 ENSMUSG00000043770.10 ENSMUSG00000043770 ENSMUST00000102482 Gm12481 processed_pseudogene Interval_23393 chr11 22188787 22189019 + 0 NA intron (ENSMUSG00000042302.14, intron 5 of 24) protein_coding-intron (ENSMUSG00000042302.14, intron 4 of 23) 97892 ENSMUSG00000042302.14 ENSMUSG00000042302 ENSMUST00000137594 Ehbp1 protein_coding Interval_129814 chr5 122501402 122504206 + 0 NA promoter-TSS (ENSMUSG00000029467.15) protein_coding-promoter-TSS (ENSMUSG00000029467.15) -1183 ENSMUSG00000029467.15 ENSMUSG00000029467 ENSMUST00000196490 Atp2a2 protein_coding Interval_173645 chrX 101437376 101437755 + 0 NA intron (ENSMUSG00000031311.17, intron 3 of 3) protein_coding-intron (ENSMUSG00000031311.17, intron 3 of 11) -7168 ENSMUSG00000031311.17 ENSMUSG00000031311 ENSMUST00000134783 Nono protein_coding Interval_136773 chr6 59474308 59474541 + 0 NA Intergenic Intergenic -48130 ENSMUSG00000045441.5 ENSMUSG00000045441 ENSMUST00000051065 Gprin3 protein_coding Interval_116595 chr4 115954325 115955627 + 0 NA Intergenic Intergenic -15050 ENSMUSG00000028707.15 ENSMUSG00000028707 ENSMUST00000084338 Dmbx1 protein_coding Interval_157637 chr8 71952650 71953738 + 0 NA promoter-TSS (ENSMUSG00000052446.17) protein_coding-promoter-TSS (ENSMUSG00000052446.17) -253 ENSMUSG00000052446.17 ENSMUSG00000052446 ENSMUST00000151168 Zfp961 protein_coding Interval_121006 chr4 152170272 152170836 + 0 NA Intergenic Intergenic 11005 ENSMUSG00000028940.2 ENSMUSG00000028940 ENSMUST00000138991 Hes2 protein_coding Interval_26569 chr11 58959882 58960414 + 0 NA intron (ENSMUSG00000036964.14, intron 1 of 6) protein_coding-intron (ENSMUSG00000036964.14, intron 1 of 6) -1664 ENSMUSG00000080152.4 ENSMUSG00000080152 ENSMUST00000122447 H3f4 unprocessed_pseudogene Interval_163480 chr9 21633058 21633376 + 0 NA intron (ENSMUSG00000032187.16, intron 2 of 33) protein_coding-intron (ENSMUSG00000032187.16, intron 2 of 33) 16953 ENSMUSG00000032187.16 ENSMUSG00000032187 ENSMUST00000172996 Smarca4 protein_coding Interval_8854 chr1 151564147 151564619 + 0 NA Intergenic Intergenic -6990 ENSMUSG00000026483.13 ENSMUSG00000026483 ENSMUST00000086267 Fam129a protein_coding Interval_171590 chr9 119418050 119418681 + 0 NA intron (ENSMUSG00000061393.14, intron 1 of 10) protein_coding-intron (ENSMUSG00000061393.14, intron 1 of 9) -9349 ENSMUSG00000111204.1 ENSMUSG00000111204 ENSMUST00000217028 Gm47320 antisense Interval_32497 chr11 107911005 107911729 + 0 NA promoter-TSS (ENSMUSG00000040373.12) protein_coding-promoter-TSS (ENSMUSG00000040373.12) -5 ENSMUSG00000040373.12 ENSMUSG00000040373 ENSMUST00000039071 Cacng5 protein_coding Interval_84328 chr19 10149524 10150044 + 0 NA Intergenic Intergenic 26377 ENSMUSG00000117700.1 ENSMUSG00000117700 ENSMUST00000235345 Gm50359 processed_pseudogene Interval_98500 chr2 152810275 152811950 + 0 NA intron (ENSMUSG00000007659.18, intron 2 of 2) protein_coding-intron (ENSMUSG00000007659.18, intron 2 of 2) 17423 ENSMUSG00000007659.18 ENSMUSG00000007659 ENSMUST00000156688 Bcl2l1 protein_coding Interval_115509 chr4 99600858 99601368 + 0 NA Intergenic Intergenic 15409 ENSMUSG00000083698.1 ENSMUSG00000083698 ENSMUST00000119752 Gm12687 processed_pseudogene Interval_99625 chr2 163665133 163665921 + 0 NA intron (ENSMUSG00000035268.14, intron 1 of 3) protein_coding-intron (ENSMUSG00000035268.14, intron 1 of 3) 7141 ENSMUSG00000035268.14 ENSMUSG00000035268 ENSMUST00000109400 Pkig protein_coding Interval_40644 chr12 106288871 106289597 + 0 NA Intergenic Intergenic -38134 ENSMUSG00000091280.1 ENSMUSG00000091280 ENSMUST00000164367 Gm17032 lincRNA Interval_94775 chr2 94241317 94241924 + 0 NA promoter-TSS (ENSMUSG00000065511.1) miRNA-promoter-TSS (ENSMUSG00000065511.1) -167 ENSMUSG00000065511.1 ENSMUSG00000065511 ENSMUST00000083577 Mir129-2 miRNA Interval_18392 chr10 85505316 85505522 + 0 NA intron (ENSMUSG00000020042.15, intron 1 of 16) protein_coding-intron (ENSMUSG00000020042.15, intron 1 of 9) -139784 ENSMUSG00000020042.15 ENSMUSG00000020042 ENSMUST00000145433 Btbd11 protein_coding Interval_82938 chr18 79748969 79749739 + 0 NA Intergenic Intergenic -48097 ENSMUSG00000117709.1 ENSMUSG00000117709 ENSMUST00000237884 Gm50178 processed_pseudogene Interval_80880 chr18 49847897 49848193 + 0 NA intron (ENSMUSG00000037416.13, intron 4 of 42) protein_coding-intron (ENSMUSG00000037416.13, intron 4 of 42) -30087 ENSMUSG00000100134.1 ENSMUSG00000100134 ENSMUST00000186872 1700065O20Rik lincRNA Interval_14291 chr10 30530158 30530402 + 0 NA TTS (ENSMUSG00000111211.1) TEC-TTS (ENSMUSG00000111211.1) 1750 ENSMUSG00000111211.1 ENSMUSG00000111211 ENSMUST00000214092 Gm48233 TEC Interval_153231 chr7 142658921 142660932 + 0 NA promoter-TSS (ENSMUSG00000048583.16) protein_coding-promoter-TSS (ENSMUSG00000048583.16) 233 ENSMUSG00000086266.1 ENSMUSG00000086266 ENSMUST00000124393 Igf2os antisense Interval_158169 chr8 79479597 79479792 + 0 NA Intergenic Intergenic 10492 ENSMUSG00000109851.1 ENSMUSG00000109851 ENSMUST00000210554 Gm39288 processed_pseudogene Interval_158295 chr8 80907973 80908901 + 0 NA Intergenic Intergenic -25240 ENSMUSG00000098223.1 ENSMUSG00000098223 ENSMUST00000182279 Gm4891 processed_pseudogene Interval_137745 chr6 82041343 82043951 + 0 NA intron (ENSMUSG00000035104.14, intron 1 of 2) protein_coding-intron (ENSMUSG00000035104.14, intron 1 of 2) 1604 ENSMUSG00000035104.14 ENSMUSG00000035104 ENSMUST00000149023 Eva1a protein_coding Interval_84908 chr19 18701445 18701736 + 0 NA intron (ENSMUSG00000024726.10, intron 6 of 7) protein_coding-intron (ENSMUSG00000024726.10, intron 6 of 7) -11603 ENSMUSG00000047044.7 ENSMUSG00000047044 ENSMUST00000055792 D030056L22Rik protein_coding Interval_21998 chr11 5691768 5692579 + 0 NA Intergenic Intergenic -13541 ENSMUSG00000081691.1 ENSMUSG00000081691 ENSMUST00000122017 Gm11965 processed_pseudogene Interval_110456 chr3 158395551 158396640 + 0 NA intron (ENSMUSG00000028176.13, intron 2 of 24) protein_coding-intron (ENSMUSG00000028176.13, intron 3 of 27) -92896 ENSMUSG00000105683.1 ENSMUSG00000105683 ENSMUST00000200331 Gm43487 TEC Interval_83715 chr19 3906508 3907535 + 0 NA promoter-TSS (ENSMUSG00000001750.16) protein_coding-promoter-TSS (ENSMUSG00000001750.16) -781 ENSMUSG00000001750.16 ENSMUSG00000001750 ENSMUST00000236590 Tcirg1 protein_coding Interval_50857 chr14 20242416 20243372 + 0 NA Intergenic Intergenic 18038 ENSMUSG00000114410.1 ENSMUSG00000114410 ENSMUST00000224421 Gm2048 unprocessed_pseudogene Interval_117443 chr4 123709325 123710653 + 0 NA promoter-TSS (ENSMUSG00000081170.1) processed_pseudogene-promoter-TSS (ENSMUSG00000081170.1) 38 ENSMUSG00000081170.1 ENSMUSG00000081170 ENSMUST00000120626 Gm12922 processed_pseudogene Interval_99208 chr2 158072351 158072673 + 0 NA intron (ENSMUSG00000027651.16, intron 5 of 5) protein_coding-intron (ENSMUSG00000027651.16, intron 6 of 6) 19285 ENSMUSG00000100860.1 ENSMUSG00000100860 ENSMUST00000186977 2010009K17Rik antisense Interval_32125 chr11 105371643 105372276 + 0 NA promoter-TSS (ENSMUSG00000078627.9) protein_coding-promoter-TSS (ENSMUSG00000078627.9) 8707 ENSMUSG00000086487.1 ENSMUSG00000086487 ENSMUST00000153672 Gm11638 processed_transcript Interval_58911 chr15 39928678 39929694 + 0 NA intron (ENSMUSG00000022305.13, intron 1 of 1) protein_coding-intron (ENSMUSG00000022305.13, intron 1 of 6) 14504 ENSMUSG00000022305.13 ENSMUSG00000022305 ENSMUST00000146714 Lrp12 protein_coding Interval_101943 chr3 12616410 12616630 + 0 NA Intergenic Intergenic -14740 ENSMUSG00000104177.1 ENSMUSG00000104177 ENSMUST00000194635 Gm2429 processed_pseudogene Interval_75681 chr17 70633326 70634081 + 0 NA intron (ENSMUSG00000003279.17, intron 2 of 9) protein_coding-intron (ENSMUSG00000003279.17, intron 7 of 14) 121879 ENSMUSG00000097282.1 ENSMUSG00000097282 ENSMUST00000181546 5031415H12Rik antisense Interval_15754 chr10 56031086 56031637 + 0 NA intron (ENSMUSG00000038122.9, intron 31 of 32) protein_coding-intron (ENSMUSG00000038122.9, intron 31 of 32) 70642 ENSMUSG00000112528.1 ENSMUSG00000112528 ENSMUST00000218919 Gm29794 processed_pseudogene Interval_8902 chr1 151952830 151953724 + 0 NA intron (ENSMUSG00000032666.16, intron 3 of 6) protein_coding-intron (ENSMUSG00000032666.16, intron 3 of 5) 77858 ENSMUSG00000100685.1 ENSMUSG00000100685 ENSMUST00000187716 Gm28610 antisense Interval_149977 chr7 104129268 104129534 + 0 NA exon (ENSMUSG00000055643.4, exon 1 of 1) protein_coding-exon (ENSMUSG00000055643.4, exon 1 of 1) 425 ENSMUSG00000055643.4 ENSMUSG00000055643 ENSMUST00000053743 Ubqln5 protein_coding Interval_92878 chr2 67966274 67966470 + 0 NA intron (ENSMUSG00000034780.6, intron 2 of 4) protein_coding-intron (ENSMUSG00000034780.6, intron 2 of 4) 67776 ENSMUSG00000104398.1 ENSMUSG00000104398 ENSMUST00000192459 Gm37964 TEC Interval_54916 chr14 76216992 76217749 + 0 NA Intergenic Intergenic 20175 ENSMUSG00000095427.2 ENSMUSG00000095427 ENSMUST00000095471 Rps2-ps6 processed_pseudogene Interval_59397 chr15 52153280 52154020 + 0 NA Intergenic Intergenic 64342 ENSMUSG00000115457.1 ENSMUSG00000115457 ENSMUST00000227885 Gm2387 processed_pseudogene Interval_19770 chr10 108620633 108621008 + 0 NA intron (ENSMUSG00000035864.14, intron 9 of 11) protein_coding-intron (ENSMUSG00000035864.14, intron 8 of 10) 79340 ENSMUSG00000112039.1 ENSMUSG00000112039 ENSMUST00000218023 Gm5136 protein_coding Interval_65466 chr16 22504998 22506517 + 0 NA intron (ENSMUSG00000022861.17, intron 21 of 24) protein_coding-intron (ENSMUSG00000022861.17, intron 20 of 23) -5723 ENSMUSG00000089874.1 ENSMUSG00000089874 ENSMUST00000159309 9230117E06Rik antisense Interval_123613 chr5 33811724 33812108 + 0 NA Intergenic Intergenic -29202 ENSMUSG00000005299.6 ENSMUSG00000005299 ENSMUST00000148451 Letm1 protein_coding Interval_173995 chrX 127274608 127274823 + 0 NA Intergenic Intergenic -52775 ENSMUSG00000089372.1 ENSMUSG00000089372 ENSMUST00000158747 Gm22139 snRNA Interval_123969 chr5 36920237 36921106 + 0 NA intron (ENSMUSG00000029120.10, intron 1 of 3) protein_coding-intron (ENSMUSG00000029120.10, intron 1 of 8) 10557 ENSMUSG00000106934.1 ENSMUSG00000106934 ENSMUST00000202009 Gm42506 TEC Interval_65320 chr16 21495471 21496098 + 0 NA intron (ENSMUSG00000033653.18, intron 6 of 31) protein_coding-intron (ENSMUSG00000033653.18, intron 20 of 43) -37328 ENSMUSG00000033653.18 ENSMUSG00000033653 ENSMUST00000127903 Vps8 protein_coding Interval_2532 chr1 39986355 39986695 + 0 NA intron (ENSMUSG00000026074.15, intron 9 of 31) protein_coding-intron (ENSMUSG00000026074.15, intron 9 of 30) 63843 ENSMUSG00000102985.1 ENSMUSG00000102985 ENSMUST00000193054 4930456G14Rik TEC Interval_170234 chr9 106367446 106369781 + 0 NA promoter-TSS (ENSMUSG00000053716.9) protein_coding-promoter-TSS (ENSMUSG00000053716.9) -6006 ENSMUSG00000053716.9 ENSMUSG00000053716 ENSMUST00000193878 Dusp7 protein_coding Interval_53432 chr14 57398077 57399093 + 0 NA promoter-TSS (ENSMUSG00000021947.11) protein_coding-promoter-TSS (ENSMUSG00000021947.11) -89 ENSMUSG00000021947.11 ENSMUSG00000021947 ENSMUST00000225765 Cryl1 protein_coding Interval_35097 chr12 17296720 17297588 + 0 NA TTS (ENSMUSG00000020566.19) protein_coding-TTS (ENSMUSG00000020566.19) 27559 ENSMUSG00000020566.19 ENSMUSG00000020566 ENSMUST00000143131 Atp6v1c2 protein_coding Interval_12440 chr1 193486281 193487802 + 0 NA Intergenic Intergenic -6546 ENSMUSG00000102981.1 ENSMUSG00000102981 ENSMUST00000194074 Gm38322 TEC Interval_8253 chr1 136749106 136749916 + 0 NA Intergenic Intergenic 8098 ENSMUSG00000096432.1 ENSMUSG00000096432 ENSMUST00000175316 Gm22132 miRNA Interval_123905 chr5 36414353 36415388 + 0 NA Intergenic Intergenic -48952 ENSMUSG00000029093.14 ENSMUSG00000029093 ENSMUST00000141508 Sorcs2 protein_coding Interval_65558 chr16 23300361 23300776 + 0 NA intron (ENSMUSG00000022885.16, intron 1 of 6) protein_coding-intron (ENSMUSG00000022885.16, intron 2 of 7) 74547 ENSMUSG00000022885.16 ENSMUSG00000022885 ENSMUST00000115335 St6gal1 protein_coding Interval_111051 chr4 11510833 11511359 + 0 NA intron (ENSMUSG00000040720.15, intron 7 of 24) protein_coding-intron (ENSMUSG00000040720.15, intron 7 of 12) -8257 ENSMUSG00000086625.1 ENSMUSG00000086625 ENSMUST00000141538 Gm11831 antisense Interval_58204 chr15 30734403 30734927 + 0 NA intron (ENSMUSG00000022240.10, intron 1 of 2) protein_coding-intron (ENSMUSG00000022240.10, intron 9 of 22) -108044 ENSMUSG00000115337.1 ENSMUSG00000115337 ENSMUST00000228499 4930570B17Rik antisense Interval_132942 chr5 148879185 148879715 + 0 NA promoter-TSS (ENSMUSG00000041298.15) protein_coding-promoter-TSS (ENSMUSG00000041298.15) -47238 ENSMUSG00000106810.1 ENSMUSG00000106810 ENSMUST00000202134 Gm43600 unprocessed_pseudogene Interval_113416 chr4 54780315 54781325 + 0 NA Intergenic Intergenic 70196 ENSMUSG00000084710.1 ENSMUSG00000084710 ENSMUST00000122761 Gm24628 misc_RNA Interval_78807 chr18 20734178 20734930 + 0 NA intron (ENSMUSG00000056124.5, intron 1 of 8) protein_coding-intron (ENSMUSG00000056124.5, intron 1 of 8) 11850 ENSMUSG00000056124.5 ENSMUSG00000056124 ENSMUST00000070080 B4galt6 protein_coding Interval_141816 chr6 134686067 134686259 + 0 NA exon (ENSMUSG00000042992.15, exon 3 of 3) protein_coding-exon (ENSMUSG00000042992.15, exon 3 of 3) -3696 ENSMUSG00000108166.1 ENSMUSG00000108166 ENSMUST00000203231 Gm44017 sense_intronic Interval_102891 chr3 32578755 32579048 + 0 NA exon (ENSMUSG00000027668.13, exon 18 of 18) protein_coding-exon (ENSMUSG00000027668.13, exon 18 of 18) 4683 ENSMUSG00000027668.13 ENSMUSG00000027668 ENSMUST00000195334 Mfn1 protein_coding Interval_154152 chr8 13081875 13082131 + 0 NA intron (ENSMUSG00000038542.14, intron 6 of 10) protein_coding-intron (ENSMUSG00000038542.14, intron 9 of 13) -4506 ENSMUSG00000091784.2 ENSMUSG00000091784 ENSMUST00000166415 Gm17022 processed_pseudogene Interval_10248 chr1 167565051 167565928 + 0 NA Intergenic Intergenic -32971 ENSMUSG00000015843.10 ENSMUSG00000015843 ENSMUST00000111380 Rxrg protein_coding Interval_154336 chr8 14721567 14722284 + 0 NA intron (ENSMUSG00000047495.15, intron 4 of 14) protein_coding-intron (ENSMUSG00000047495.15, intron 4 of 14) 25502 ENSMUSG00000084945.1 ENSMUSG00000084945 ENSMUST00000155211 C030037F17Rik antisense Interval_40903 chr12 109717246 109717419 + 0 NA promoter-TSS (ENSMUSG00000076241.2) miRNA-promoter-TSS (ENSMUSG00000076241.2) 74 ENSMUSG00000076241.2 ENSMUSG00000076241 ENSMUST00000102286 Mir543 miRNA Interval_112024 chr4 33307347 33307792 + 0 NA intron (ENSMUSG00000086127.1, intron 1 of 1) processed_transcript-intron (ENSMUSG00000086127.1, intron 1 of 1) 2568 ENSMUSG00000086127.1 ENSMUSG00000086127 ENSMUST00000132553 Gm11934 processed_transcript Interval_118660 chr4 133042665 133043144 + 0 NA intron (ENSMUSG00000037692.14, intron 1 of 5) protein_coding-intron (ENSMUSG00000037692.14, intron 1 of 5) 31066 ENSMUSG00000037692.14 ENSMUSG00000037692 ENSMUST00000148518 Ahdc1 protein_coding Interval_72867 chr17 32778458 32778929 + 0 NA intron (ENSMUSG00000024298.15, intron 1 of 3) protein_coding-intron (ENSMUSG00000024298.15, intron 1 of 3) 9557 ENSMUSG00000024298.15 ENSMUSG00000024298 ENSMUST00000168337 Zfp871 protein_coding Interval_165806 chr9 53320578 53320783 + 0 NA intron (ENSMUSG00000034584.3, intron 1 of 5) protein_coding-intron (ENSMUSG00000034584.3, intron 1 of 5) -20509 ENSMUSG00000034584.3 ENSMUSG00000034584 ENSMUST00000139096 Exph5 protein_coding Interval_51768 chr14 32084893 32086106 + 0 NA promoter-TSS (ENSMUSG00000021906.14) protein_coding-promoter-TSS (ENSMUSG00000021906.14) 193 ENSMUSG00000021905.14 ENSMUSG00000021905 ENSMUST00000112000 Dph3 protein_coding Interval_166512 chr9 60272045 60272600 + 0 NA intron (ENSMUSG00000032289.15, intron 5 of 16) protein_coding-intron (ENSMUSG00000032289.15, intron 6 of 17) -61820 ENSMUSG00000111296.1 ENSMUSG00000111296 ENSMUST00000214235 2010001M07Rik antisense Interval_101581 chr3 7124075 7124486 + 0 NA Intergenic Intergenic 68930 ENSMUSG00000104274.1 ENSMUSG00000104274 ENSMUST00000193158 Gm8823 processed_pseudogene Interval_49181 chr13 109229035 109229915 + 0 NA intron (ENSMUSG00000021699.17, intron 1 of 14) protein_coding-intron (ENSMUSG00000021699.17, intron 1 of 14) -95269 ENSMUSG00000076946.2 ENSMUSG00000076946 ENSMUST00000103758 Mir582 miRNA Interval_67312 chr16 45907263 45907573 + 0 NA exon (ENSMUSG00000033149.17, exon 2 of 4) protein_coding-exon (ENSMUSG00000033149.17, exon 2 of 4) -28905 ENSMUSG00000085781.1 ENSMUSG00000085781 ENSMUST00000152070 Gm15640 antisense Interval_127543 chr5 104983436 104983828 + 0 NA promoter-TSS (ENSMUSG00000029299.14) protein_coding-promoter-TSS (ENSMUSG00000029299.14) 4111 ENSMUSG00000104899.1 ENSMUSG00000104899 ENSMUST00000197462 Gm43855 processed_pseudogene Interval_49108 chr13 108107871 108108152 + 0 NA intron (ENSMUSG00000068184.7, intron 1 of 3) protein_coding-intron (ENSMUSG00000068184.7, intron 1 of 3) 50473 ENSMUSG00000068184.7 ENSMUSG00000068184 ENSMUST00000225830 Ndufaf2 protein_coding Interval_67770 chr16 57056334 57056537 + 0 NA intron (ENSMUSG00000046748.8, intron 1 of 5) protein_coding-intron (ENSMUSG00000046748.8, intron 2 of 6) 14917 ENSMUSG00000046748.8 ENSMUSG00000046748 ENSMUST00000227043 Tmem45a2 protein_coding Interval_17958 chr10 81069786 81070586 + 0 NA promoter-TSS (ENSMUSG00000004929.12) protein_coding-promoter-TSS (ENSMUSG00000004929.12) 27 ENSMUSG00000004929.12 ENSMUSG00000004929 ENSMUST00000166404 Thop1 protein_coding Interval_6399 chr1 107014659 107015490 + 0 NA Intergenic Intergenic 10251 ENSMUSG00000084228.1 ENSMUSG00000084228 ENSMUST00000122046 Gm8080 unprocessed_pseudogene Interval_123922 chr5 36562721 36564216 + 0 NA intron (ENSMUSG00000029192.17, intron 2 of 2) protein_coding-intron (ENSMUSG00000029192.17, intron 2 of 13) 50271 ENSMUSG00000106797.1 ENSMUSG00000106797 ENSMUST00000174019 Gm42936 processed_transcript Interval_122882 chr5 26817040 26818306 + 0 NA exon (ENSMUSG00000061576.15, exon 1 of 26) protein_coding-exon (ENSMUSG00000061576.15, exon 1 of 26) 10832 ENSMUSG00000104733.1 ENSMUSG00000104733 ENSMUST00000196217 Gm29784 processed_pseudogene Interval_97914 chr2 145647584 145648083 + 0 NA Intergenic Intergenic -27382 ENSMUSG00000001768.16 ENSMUSG00000001768 ENSMUST00000145874 Rin2 protein_coding Interval_85050 chr19 21802104 21802523 + 0 NA intron (ENSMUSG00000024754.13, intron 5 of 5) protein_coding-intron (ENSMUSG00000024754.13, intron 5 of 23) 23925 ENSMUSG00000024754.13 ENSMUSG00000024754 ENSMUST00000238079 Cemip2 protein_coding Interval_23512 chr11 23047513 23049207 + 0 NA Intergenic Intergenic 14872 ENSMUSG00000088010.1 ENSMUSG00000088010 ENSMUST00000157385 Gm23740 rRNA Interval_12984 chr10 8889321 8889845 + 0 NA Intergenic Intergenic -3531 ENSMUSG00000015305.6 ENSMUSG00000015305 ENSMUST00000213032 Sash1 protein_coding Interval_47119 chr13 75926806 75927654 + 0 NA intron (ENSMUSG00000021589.13, intron 3 of 4) protein_coding-intron (ENSMUSG00000021589.13, intron 3 of 11) 3098 ENSMUSG00000081816.1 ENSMUSG00000081816 ENSMUST00000117821 Gm15528 processed_pseudogene Interval_50707 chr14 18387001 18387263 + 0 NA Intergenic Intergenic -55388 ENSMUSG00000021774.13 ENSMUSG00000021774 ENSMUST00000161580 Ube2e1 protein_coding Interval_61162 chr15 79596020 79597286 + 0 NA intron (ENSMUSG00000022429.11, intron 4 of 8) protein_coding-intron (ENSMUSG00000022429.11, intron 4 of 13) -1860 ENSMUSG00000093223.3 ENSMUSG00000093223 ENSMUST00000175482 Gm27903 miRNA Interval_126893 chr5 96801891 96803240 + 0 NA intron (ENSMUSG00000029484.12, intron 3 of 7) protein_coding-intron (ENSMUSG00000029484.12, intron 2 of 12) 4358 ENSMUSG00000105356.1 ENSMUSG00000105356 ENSMUST00000199893 Gm42603 TEC Interval_113933 chr4 59971438 59972136 + 0 NA intron (ENSMUSG00000078689.8, intron 1 of 6) protein_coding-intron (ENSMUSG00000078689.8, intron 1 of 6) 7493 ENSMUSG00000078689.8 ENSMUSG00000078689 ENSMUST00000107520 Mup6 protein_coding Interval_120020 chr4 141398396 141398905 + 0 NA promoter-TSS (ENSMUSG00000033770.13) protein_coding-promoter-TSS (ENSMUSG00000033770.13) -207 ENSMUSG00000086061.7 ENSMUSG00000086061 ENSMUST00000149247 Gm13075 antisense Interval_118532 chr4 132328667 132329978 + 0 NA promoter-TSS (ENSMUSG00000028898.15) protein_coding-promoter-TSS (ENSMUSG00000028898.15) 172 ENSMUSG00000028898.15 ENSMUSG00000028898 ENSMUST00000141317 Trnau1ap protein_coding Interval_114488 chr4 81023374 81023863 + 0 NA Intergenic Intergenic 56174 ENSMUSG00000099273.1 ENSMUSG00000099273 ENSMUST00000184920 Gm27452 miRNA Interval_70000 chr17 4198201 4198388 + 0 NA Intergenic Intergenic -76192 ENSMUSG00000116615.1 ENSMUSG00000116615 ENSMUST00000231319 4930548J01Rik processed_transcript Interval_100607 chr2 170432131 170432324 + 0 NA Intergenic Intergenic 27046 ENSMUSG00000086970.1 ENSMUSG00000086970 ENSMUST00000133586 Bcas1os1 antisense Interval_139597 chr6 102170727 102171316 + 0 NA intron (ENSMUSG00000030075.10, intron 20 of 22) protein_coding-intron (ENSMUSG00000030075.10, intron 19 of 21) -4820 ENSMUSG00000030075.10 ENSMUSG00000030075 ENSMUST00000032159 Cntn3 protein_coding Interval_161623 chr8 121635769 121636300 + 0 NA intron (ENSMUSG00000061410.6, intron 1 of 12) protein_coding-intron (ENSMUSG00000061410.6, intron 1 of 12) -18020 ENSMUSG00000098221.1 ENSMUSG00000098221 ENSMUST00000182551 Gm27030 lincRNA Interval_17651 chr10 78487518 78488208 + 0 NA promoter-TSS (ENSMUSG00000055704.4) TEC-promoter-TSS (ENSMUSG00000055704.4) -21 ENSMUSG00000055704.4 ENSMUSG00000055704 ENSMUST00000069431 Gm9978 TEC Interval_149313 chr7 97381166 97381359 + 0 NA intron (ENSMUSG00000035704.17, intron 5 of 12) protein_coding-intron (ENSMUSG00000035704.17, intron 5 of 12) -5960 ENSMUSG00000035704.17 ENSMUSG00000035704 ENSMUST00000137105 Alg8 protein_coding Interval_119352 chr4 137082998 137083713 + 0 NA Intergenic Intergenic 34227 ENSMUSG00000085542.1 ENSMUSG00000085542 ENSMUST00000132824 1700037C06Rik lincRNA Interval_165700 chr9 51137007 51137291 + 0 NA intron (ENSMUSG00000110266.1, intron 30 of 30) protein_coding-intron (ENSMUSG00000110266.1, intron 30 of 30) 28368 ENSMUSG00000110266.1 ENSMUSG00000110266 ENSMUST00000210433 Gm32742 protein_coding Interval_164526 chr9 37750468 37750836 + 0 NA Intergenic Intergenic 5546 ENSMUSG00000063350.6 ENSMUSG00000063350 ENSMUST00000115004 Olfr874 protein_coding Interval_73592 chr17 40888858 40889261 + 0 NA Intergenic Intergenic -8501 ENSMUSG00000054951.3 ENSMUSG00000054951 ENSMUST00000233122 9130008F23Rik protein_coding Interval_58292 chr15 31724027 31724482 + 0 NA Intergenic Intergenic 9384 ENSMUSG00000115589.1 ENSMUSG00000115589 ENSMUST00000228855 Gm18003 processed_pseudogene Interval_88885 chr2 12069975 12070265 + 0 NA Intergenic Intergenic 13872 ENSMUSG00000080801.2 ENSMUSG00000080801 ENSMUST00000120962 Gm13310 processed_pseudogene Interval_79700 chr18 34595977 34596156 + 0 NA exon (ENSMUSG00000049357.11, exon 1 of 6) protein_coding-exon (ENSMUSG00000049357.11, exon 1 of 6) 1279 ENSMUSG00000049357.11 ENSMUSG00000049357 ENSMUST00000129566 Brd8dc protein_coding Interval_5370 chr1 88072482 88072688 + 0 NA intron (ENSMUSG00000090175.1, intron 1 of 4) protein_coding-intron (ENSMUSG00000090175.1, intron 1 of 4) 1785 ENSMUSG00000090175.1 ENSMUSG00000090175 ENSMUST00000073772 Ugt1a9 protein_coding Interval_4672 chr1 75936799 75937020 + 0 NA Intergenic Intergenic 81847 ENSMUSG00000099996.1 ENSMUSG00000099996 ENSMUST00000188786 Gm29065 lincRNA Interval_83847 chr19 5067186 5068302 + 0 NA promoter-TSS (ENSMUSG00000056481.7) protein_coding-promoter-TSS (ENSMUSG00000056481.7) -334 ENSMUSG00000056481.7 ENSMUSG00000056481 ENSMUST00000070630 Cd248 protein_coding Interval_101419 chr2 181219542 181220355 + 0 NA promoter-TSS (ENSMUSG00000047841.8) protein_coding-promoter-TSS (ENSMUSG00000047841.8) -89 ENSMUSG00000047841.8 ENSMUSG00000047841 ENSMUST00000108835 Fndc11 protein_coding Interval_1508 chr1 24378334 24378653 + 0 NA intron (ENSMUSG00000026141.13, intron 4 of 39) protein_coding-intron (ENSMUSG00000026141.13, intron 15 of 47) 74252 ENSMUSG00000026141.13 ENSMUSG00000026141 ENSMUST00000051344 Col19a1 protein_coding Interval_124176 chr5 38993005 38993419 + 0 NA Intergenic Intergenic 9819 ENSMUSG00000106924.1 ENSMUSG00000106924 ENSMUST00000200823 Gm42857 processed_pseudogene Interval_74045 chr17 46247651 46248626 + 0 NA promoter-TSS (ENSMUSG00000067148.15) protein_coding-promoter-TSS (ENSMUSG00000067148.15) -7 ENSMUSG00000071074.9 ENSMUSG00000071074 ENSMUST00000149989 Yipf3 protein_coding Interval_174037 chrX 130762516 130762861 + 0 NA Intergenic Intergenic 125090 ENSMUSG00000077040.1 ENSMUSG00000077040 ENSMUST00000103852 Gm26209 miRNA Interval_102685 chr3 29999282 29999611 + 0 NA intron (ENSMUSG00000027684.16, intron 2 of 5) protein_coding-intron (ENSMUSG00000027684.16, intron 2 of 14) -18082 ENSMUSG00000085702.8 ENSMUSG00000085702 ENSMUST00000173827 Mecomos antisense Interval_156605 chr8 54492938 54494063 + 0 NA Intergenic Intergenic 20650 ENSMUSG00000110403.1 ENSMUSG00000110403 ENSMUST00000209929 Gm45553 TEC Interval_124548 chr5 50295286 50295494 + 0 NA intron (ENSMUSG00000105020.1, intron 2 of 4) unprocessed_pseudogene-intron (ENSMUSG00000105020.1, intron 2 of 4) -4904 ENSMUSG00000095857.1 ENSMUSG00000095857 ENSMUST00000179376 Gm22618 snRNA Interval_133785 chr6 12124976 12127287 + 0 NA Intergenic Intergenic -2495 ENSMUSG00000108209.1 ENSMUSG00000108209 ENSMUST00000203296 Gm32222 processed_pseudogene Interval_52607 chr14 47848179 47848396 + 0 NA Intergenic Intergenic -42968 ENSMUSG00000115215.1 ENSMUSG00000115215 ENSMUST00000226360 Gm41148 lincRNA Interval_146521 chr7 46587128 46588059 + 0 NA intron (ENSMUSG00000030839.12, intron 9 of 11) protein_coding-intron (ENSMUSG00000030839.12, intron 9 of 10) -25868 ENSMUSG00000110272.1 ENSMUSG00000110272 ENSMUST00000210436 Gm45310 TEC Interval_103417 chr3 41447003 41447220 + 0 NA Intergenic Intergenic -5644 ENSMUSG00000089350.1 ENSMUSG00000089350 ENSMUST00000158725 Gm25487 snoRNA Interval_15792 chr10 56782474 56783443 + 0 NA Intergenic Intergenic 46349 ENSMUSG00000112191.1 ENSMUSG00000112191 ENSMUST00000219666 Gm31931 processed_pseudogene Interval_115839 chr4 105184650 105185523 + 0 NA intron (ENSMUSG00000028517.8, intron 1 of 5) protein_coding-intron (ENSMUSG00000028517.8, intron 1 of 5) 27739 ENSMUSG00000028517.8 ENSMUSG00000028517 ENSMUST00000064139 Plpp3 protein_coding Interval_4377 chr1 73506984 73507776 + 0 NA Intergenic Intergenic -4666 ENSMUSG00000100044.1 ENSMUSG00000100044 ENSMUST00000185703 Gm9553 processed_pseudogene Interval_71285 chr17 21918215 21918892 + 0 NA Intergenic Intergenic 2619 ENSMUSG00000117049.1 ENSMUSG00000117049 ENSMUST00000233196 Gm6540 processed_pseudogene Interval_75251 chr17 65405913 65406369 + 0 NA intron (ENSMUSG00000045036.15, intron 9 of 12) protein_coding-intron (ENSMUSG00000045036.15, intron 12 of 15) -9851 ENSMUSG00000117012.1 ENSMUSG00000117012 ENSMUST00000232744 Gm18992 processed_pseudogene Interval_97546 chr2 139711532 139712590 + 0 NA intron (ENSMUSG00000074766.10, intron 1 of 5) protein_coding-intron (ENSMUSG00000074766.10, intron 1 of 5) 33883 ENSMUSG00000074766.10 ENSMUSG00000074766 ENSMUST00000099307 Ism1 protein_coding Interval_100149 chr2 167335062 167336198 + 0 NA intron (ENSMUSG00000017929.13, intron 1 of 8) protein_coding-intron (ENSMUSG00000017929.13, intron 1 of 8) -21775 ENSMUSG00000017929.13 ENSMUSG00000017929 ENSMUST00000133557 B4galt5 protein_coding Interval_65696 chr16 25522645 25525987 + 0 NA Intergenic Intergenic -81043 ENSMUSG00000116828.1 ENSMUSG00000116828 ENSMUST00000232460 Gm18896 processed_pseudogene Interval_17669 chr10 78787351 78788321 + 0 NA exon (ENSMUSG00000005357.9, exon 2 of 10) protein_coding-exon (ENSMUSG00000005357.9, exon 2 of 10) 7134 ENSMUSG00000005357.9 ENSMUSG00000005357 ENSMUST00000217717 Slc1a6 protein_coding Interval_169578 chr9 99242261 99244131 + 0 NA promoter-TSS (ENSMUSG00000056267.14) protein_coding-promoter-TSS (ENSMUSG00000056267.14) -267 ENSMUSG00000056267.14 ENSMUSG00000056267 ENSMUST00000187883 Cep70 protein_coding Interval_84190 chr19 8646463 8646683 + 0 NA Intergenic Intergenic 16762 ENSMUSG00000117763.1 ENSMUSG00000117763 ENSMUST00000236864 9830166K06Rik lincRNA Interval_2063 chr1 36211740 36212058 + 0 NA intron (ENSMUSG00000037470.14, intron 6 of 18) protein_coding-intron (ENSMUSG00000037470.14, intron 6 of 40) 32821 ENSMUSG00000037470.14 ENSMUSG00000037470 ENSMUST00000192159 Uggt1 protein_coding Interval_18182 chr10 83359796 83360804 + 0 NA promoter-TSS (ENSMUSG00000020255.8) protein_coding-promoter-TSS (ENSMUSG00000020255.8) 79 ENSMUSG00000020255.8 ENSMUSG00000020255 ENSMUST00000020488 D10Wsu102e protein_coding Interval_76080 chr17 74773296 74774802 + 0 NA TTS (ENSMUSG00000117444.1) antisense-TTS (ENSMUSG00000117444.1) 3983 ENSMUSG00000024078.7 ENSMUSG00000024078 ENSMUST00000234264 Ttc27 protein_coding Interval_174245 chrX 140664205 140665855 + 0 NA promoter-TSS (ENSMUSG00000000266.11) protein_coding-promoter-TSS (ENSMUSG00000000266.11) -14666 ENSMUSG00000089437.1 ENSMUSG00000089437 ENSMUST00000158812 Gm23199 snRNA Interval_158754 chr8 85904609 85904874 + 0 NA intron (ENSMUSG00000036879.15, intron 6 of 6) protein_coding-intron (ENSMUSG00000036879.15, intron 7 of 31) -50304 ENSMUSG00000090043.1 ENSMUSG00000090043 ENSMUST00000160428 Gm16167 processed_pseudogene Interval_70587 chr17 12151150 12151405 + 0 NA promoter-TSS (ENSMUSG00000023827.8) protein_coding-promoter-TSS (ENSMUSG00000023827.8) 31948 ENSMUSG00000023827.8 ENSMUSG00000023827 ENSMUST00000167905 Agpat4 protein_coding Interval_154362 chr8 14992887 14993084 + 0 NA intron (ENSMUSG00000071176.10, intron 17 of 18) protein_coding-intron (ENSMUSG00000071176.10, intron 27 of 28) -18321 ENSMUSG00000055675.6 ENSMUSG00000055675 ENSMUST00000184243 Kbtbd11 protein_coding Interval_77285 chr17 87791920 87792156 + 0 NA intron (ENSMUSG00000050138.8, intron 1 of 1) protein_coding-intron (ENSMUSG00000050138.8, intron 1 of 1) 5956 ENSMUSG00000050138.8 ENSMUSG00000050138 ENSMUST00000055221 Kcnk12 protein_coding Interval_86484 chr19 40999407 40999834 + 0 NA Intergenic Intergenic -5085 ENSMUSG00000061132.13 ENSMUSG00000061132 ENSMUST00000134568 Blnk protein_coding Interval_167746 chr9 72467207 72468854 + 0 NA intron (ENSMUSG00000090626.9, intron 7 of 7) protein_coding-intron (ENSMUSG00000090626.9, intron 9 of 10) 23909 ENSMUSG00000090626.9 ENSMUSG00000090626 ENSMUST00000184624 Tex9 protein_coding Interval_161965 chr8 124099108 124099943 + 0 NA intron (ENSMUSG00000092329.1, intron 1 of 15) protein_coding-intron (ENSMUSG00000092329.1, intron 1 of 15) -51113 ENSMUSG00000110704.1 ENSMUSG00000110704 ENSMUST00000212460 Gm45732 antisense Interval_149919 chr7 102622335 102622590 + 0 NA Intergenic Intergenic -4244 ENSMUSG00000073972.2 ENSMUSG00000073972 ENSMUST00000098222 Olfr553 protein_coding Interval_44314 chr13 43567291 43567557 + 0 NA Intergenic Intergenic -7233 ENSMUSG00000021371.5 ENSMUSG00000021371 ENSMUST00000223353 Mcur1 protein_coding Interval_14860 chr10 40580988 40581322 + 0 NA intron (ENSMUSG00000019834.15, intron 2 of 7) protein_coding-intron (ENSMUSG00000019834.15, intron 2 of 7) 10819 ENSMUSG00000019834.15 ENSMUSG00000019834 ENSMUST00000019978 Slc22a16 protein_coding Interval_29072 chr11 80170122 80170456 + 0 NA intron (ENSMUSG00000020709.15, intron 6 of 10) protein_coding-intron (ENSMUSG00000020709.15, intron 6 of 10) 7340 ENSMUSG00000086507.1 ENSMUSG00000086507 ENSMUST00000140556 Adap2os antisense Interval_137190 chr6 69459311 69459512 + 0 NA Intergenic Intergenic 4314 ENSMUSG00000104679.1 ENSMUSG00000104679 ENSMUST00000200639 Igkv4-60 IG_V_pseudogene Interval_133038 chr5 149447353 149447949 + 0 NA intron (ENSMUSG00000029660.10, intron 2 of 6) protein_coding-intron (ENSMUSG00000029660.10, intron 2 of 6) 5790 ENSMUSG00000107164.1 ENSMUSG00000107164 ENSMUST00000201035 4933425D22Rik sense_intronic Interval_65965 chr16 30571983 30572527 + 0 NA intron (ENSMUSG00000022538.20, intron 7 of 11) protein_coding-intron (ENSMUSG00000022538.20, intron 7 of 13) 2988 ENSMUSG00000022538.20 ENSMUSG00000022538 ENSMUST00000129004 Lsg1 protein_coding Interval_15367 chr10 45121503 45123268 + 0 NA intron (ENSMUSG00000019849.11, intron 9 of 14) protein_coding-intron (ENSMUSG00000019849.11, intron 9 of 14) -26677 ENSMUSG00000077082.1 ENSMUSG00000077082 ENSMUST00000103894 Gm23766 miRNA Interval_52789 chr14 50061287 50062917 + 0 NA exon (ENSMUSG00000102189.1, exon 1 of 1) TEC-exon (ENSMUSG00000102189.1, exon 1 of 1) 742 ENSMUSG00000102189.1 ENSMUSG00000102189 ENSMUST00000193092 Gm37194 TEC Interval_127251 chr5 101882575 101885364 + 0 NA intron (ENSMUSG00000043940.15, intron 39 of 64) protein_coding-intron (ENSMUSG00000043940.15, intron 42 of 66) 46517 ENSMUSG00000092354.7 ENSMUSG00000092354 ENSMUST00000174312 Gm20548 antisense Interval_49120 chr13 108215999 108216376 + 0 NA intron (ENSMUSG00000021696.9, intron 1 of 7) protein_coding-intron (ENSMUSG00000021696.9, intron 1 of 7) 1777 ENSMUSG00000021696.9 ENSMUSG00000021696 ENSMUST00000225550 Elovl7 protein_coding Interval_86831 chr19 44215209 44217974 + 0 NA intron (ENSMUSG00000025202.8, intron 2 of 5) protein_coding-intron (ENSMUSG00000025202.8, intron 2 of 5) -21224 ENSMUSG00000025202.8 ENSMUSG00000025202 ENSMUST00000237324 Scd3 protein_coding Interval_50736 chr14 18716337 18717167 + 0 NA intron (ENSMUSG00000058317.12, intron 4 of 4) protein_coding-intron (ENSMUSG00000058317.12, intron 2 of 4) -97417 ENSMUSG00000077689.1 ENSMUSG00000077689 ENSMUST00000104501 Gm22499 snoRNA Interval_110519 chr4 3521051 3521281 + 0 NA Intergenic Intergenic -4651 ENSMUSG00000081660.1 ENSMUSG00000081660 ENSMUST00000121996 Gm11787 unprocessed_pseudogene Interval_79613 chr18 34016931 34018397 + 0 NA Intergenic Intergenic 6616 ENSMUSG00000088501.1 ENSMUSG00000088501 ENSMUST00000157876 Gm22788 snRNA Interval_173496 chrX 95999702 96000168 + 0 NA Intergenic Intergenic -51732 ENSMUSG00000057421.12 ENSMUSG00000057421 ENSMUST00000139717 Las1l protein_coding Interval_58502 chr15 35267305 35267524 + 0 NA intron (ENSMUSG00000115345.1, intron 3 of 4) lincRNA-intron (ENSMUSG00000115345.1, intron 3 of 4) -28697 ENSMUSG00000022330.5 ENSMUSG00000022330 ENSMUST00000228152 Osr2 protein_coding Interval_56158 chr14 108375080 108375293 + 0 NA Intergenic Intergenic -4378 ENSMUSG00000092834.1 ENSMUSG00000092834 ENSMUST00000175093 Gm24818 miRNA Interval_140512 chr6 119107323 119109615 + 0 NA promoter-TSS (ENSMUSG00000051331.16) protein_coding-promoter-TSS (ENSMUSG00000051331.16) -83887 ENSMUSG00000041477.14 ENSMUSG00000041477 ENSMUST00000127059 Dcp1b protein_coding Interval_170284 chr9 106679734 106680274 + 0 NA intron (ENSMUSG00000040813.16, intron 3 of 3) protein_coding-intron (ENSMUSG00000040813.16, intron 3 of 5) 5298 ENSMUSG00000040813.16 ENSMUSG00000040813 ENSMUST00000185645 Tex264 protein_coding Interval_17785 chr10 80063524 80064460 + 0 NA intron (ENSMUSG00000035673.10, intron 17 of 32) protein_coding-intron (ENSMUSG00000035673.10, intron 16 of 31) 9527 ENSMUSG00000075706.10 ENSMUSG00000075706 ENSMUST00000136081 Gpx4 protein_coding Interval_172986 chrX 60147306 60147990 + 0 NA promoter-TSS (ENSMUSG00000031139.16) protein_coding-promoter-TSS (ENSMUSG00000031139.16) 52 ENSMUSG00000031139.16 ENSMUSG00000031139 ENSMUST00000033478 Mcf2 protein_coding Interval_34610 chr12 7859645 7860734 + 0 NA promoter-TSS (ENSMUSG00000112323.1) lincRNA-promoter-TSS (ENSMUSG00000112323.1) 289 ENSMUSG00000073233.4 ENSMUSG00000073233 ENSMUST00000101625 Nfyc-ps processed_pseudogene Interval_114334 chr4 73525784 73526032 + 0 NA Intergenic Intergenic -27431 ENSMUSG00000081871.1 ENSMUSG00000081871 ENSMUST00000117277 Gm11488 processed_pseudogene Interval_20698 chr10 120338680 120340143 + 0 NA Intergenic Intergenic -24802 ENSMUSG00000034764.15 ENSMUSG00000034764 ENSMUST00000161511 1700006J14Rik antisense Interval_20954 chr10 122752576 122754038 + 0 NA intron (ENSMUSG00000034613.12, intron 1 of 5) protein_coding-intron (ENSMUSG00000034613.12, intron 1 of 9) 5103 ENSMUSG00000112417.1 ENSMUSG00000112417 ENSMUST00000219095 A430028G04Rik TEC Interval_75319 chr17 65850984 65852229 + 0 NA intron (ENSMUSG00000024096.17, intron 7 of 7) protein_coding-intron (ENSMUSG00000024096.17, intron 9 of 9) 22658 ENSMUSG00000061950.17 ENSMUSG00000061950 ENSMUST00000162703 Ppp4r1 protein_coding Interval_24754 chr11 36689036 36690109 + 0 NA intron (ENSMUSG00000049336.16, intron 2 of 28) protein_coding-intron (ENSMUSG00000049336.16, intron 2 of 28) -33310 ENSMUSG00000065173.1 ENSMUSG00000065173 ENSMUST00000083239 Gm22127 snRNA Interval_43658 chr13 34638762 34638971 + 0 NA intron (ENSMUSG00000021411.16, intron 2 of 4) protein_coding-intron (ENSMUSG00000021411.16, intron 2 of 5) 9702 ENSMUSG00000021411.16 ENSMUSG00000021411 ENSMUST00000152392 Pxdc1 protein_coding Interval_7799 chr1 133766934 133767302 + 0 NA intron (ENSMUSG00000026463.17, intron 1 of 20) protein_coding-intron (ENSMUSG00000026463.17, intron 2 of 2) 11303 ENSMUSG00000102509.1 ENSMUSG00000102509 ENSMUST00000193173 Gm37368 TEC Interval_148697 chr7 84246062 84247045 + 0 NA exon (ENSMUSG00000015709.9, exon 19 of 19) protein_coding-exon (ENSMUSG00000015709.9, exon 19 of 19) -13634 ENSMUSG00000109091.1 ENSMUSG00000109091 ENSMUST00000207963 Gm44827 lincRNA Interval_154830 chr8 24027634 24027820 + 0 NA intron (ENSMUSG00000037492.16, intron 6 of 7) protein_coding-intron (ENSMUSG00000037492.16, intron 6 of 6) -146177 ENSMUSG00000053979.4 ENSMUSG00000053979 ENSMUST00000066740 A730045E13Rik lincRNA Interval_63085 chr15 99004459 99004873 + 0 NA Intergenic Intergenic -1391 ENSMUSG00000064081.4 ENSMUSG00000064081 ENSMUST00000079818 Gm8973 processed_pseudogene Interval_44272 chr13 43250664 43251895 + 0 NA intron (ENSMUSG00000051335.6, intron 1 of 1) protein_coding-intron (ENSMUSG00000051335.6, intron 1 of 1) 52126 ENSMUSG00000051335.6 ENSMUSG00000051335 ENSMUST00000222779 Gfod1 protein_coding Interval_127778 chr5 107720555 107721991 + 0 NA TTS (ENSMUSG00000029275.18) protein_coding-TTS (ENSMUSG00000029275.18) 4763 ENSMUSG00000029275.18 ENSMUSG00000029275 ENSMUST00000159263 Gfi1 protein_coding Interval_72940 chr17 33669162 33669944 + 0 NA intron (ENSMUSG00000059208.15, intron 2 of 3) protein_coding-intron (ENSMUSG00000059208.15, intron 3 of 16) 15848 ENSMUSG00000059208.15 ENSMUSG00000059208 ENSMUST00000127598 Hnrnpm protein_coding Interval_26944 chr11 61740417 61741223 + 0 NA intron (ENSMUSG00000020528.14, intron 7 of 10) protein_coding-intron (ENSMUSG00000020528.14, intron 8 of 11) -20874 ENSMUSG00000042371.12 ENSMUSG00000042371 ENSMUST00000148584 Slc5a10 protein_coding Interval_44662 chr13 46995791 46996812 + 0 NA intron (ENSMUSG00000051606.5, intron 2 of 6) processed_transcript-intron (ENSMUSG00000051606.5, intron 2 of 2) -12023 ENSMUSG00000051606.5 ENSMUSG00000051606 ENSMUST00000060680 2010001K21Rik processed_transcript Interval_43007 chr13 22877907 22878233 + 0 NA Intergenic Intergenic 1437 ENSMUSG00000089615.1 ENSMUSG00000089615 ENSMUST00000158990 Gm23774 snoRNA Interval_67817 chr16 57423097 57423644 + 0 NA intron (ENSMUSG00000043336.14, intron 1 of 4) protein_coding-intron (ENSMUSG00000043336.14, intron 1 of 4) 70277 ENSMUSG00000043336.14 ENSMUSG00000043336 ENSMUST00000159414 Filip1l protein_coding Interval_59347 chr15 51804177 51805041 + 0 NA intron (ENSMUSG00000022312.11, intron 2 of 2) protein_coding-intron (ENSMUSG00000022312.11, intron 2 of 7) 31648 ENSMUSG00000022312.11 ENSMUSG00000022312 ENSMUST00000228583 Eif3h protein_coding Interval_126473 chr5 88791062 88792165 + 0 NA Intergenic Intergenic -2283 ENSMUSG00000105640.1 ENSMUSG00000105640 ENSMUST00000197195 Gm42912 lincRNA Interval_38808 chr12 82495743 82496103 + 0 NA exon (ENSMUSG00000094374.2, exon 1 of 1) processed_pseudogene-exon (ENSMUSG00000094374.2, exon 1 of 1) 614 ENSMUSG00000094374.2 ENSMUSG00000094374 ENSMUST00000179295 Gm5435 processed_pseudogene Interval_43575 chr13 33734149 33734579 + 0 NA Intergenic Intergenic -4515 ENSMUSG00000097190.1 ENSMUSG00000097190 ENSMUST00000181421 Gm11394 unprocessed_pseudogene Interval_93783 chr2 76866141 76867508 + 0 NA intron (ENSMUSG00000051747.15, intron 5 of 21) protein_coding-intron (ENSMUSG00000051747.15, intron 46 of 190) -30010 ENSMUSG00000051747.15 ENSMUSG00000051747 ENSMUST00000147048 Ttn protein_coding Interval_164701 chr9 40666028 40666563 + 0 NA Intergenic Intergenic 2812 ENSMUSG00000110992.1 ENSMUSG00000110992 ENSMUST00000216204 Gm35371 lincRNA Interval_11670 chr1 184491953 184492339 + 0 NA Intergenic Intergenic 49166 ENSMUSG00000104419.1 ENSMUSG00000104419 ENSMUST00000191770 2900092O11Rik TEC Interval_47652 chr13 90807223 90807606 + 0 NA Intergenic Intergenic -29331 ENSMUSG00000114265.1 ENSMUSG00000114265 ENSMUST00000225134 Gm47521 processed_pseudogene Interval_5476 chr1 89125368 89125766 + 0 NA intron (ENSMUSG00000036206.12, intron 2 of 5) protein_coding-intron (ENSMUSG00000036206.12, intron 2 of 5) 28494 ENSMUSG00000102700.1 ENSMUSG00000102700 ENSMUST00000195426 Gm38312 TEC Interval_18210 chr10 83722107 83723487 + 0 NA promoter-TSS (ENSMUSG00000087651.3) protein_coding-promoter-TSS (ENSMUSG00000087651.3) -15112 ENSMUSG00000087651.3 ENSMUSG00000087651 ENSMUST00000218623 1500009L16Rik protein_coding Interval_132256 chr5 143669070 143669700 + 0 NA intron (ENSMUSG00000018001.18, intron 1 of 12) protein_coding-intron (ENSMUSG00000018001.18, intron 1 of 12) 46884 ENSMUSG00000018001.18 ENSMUSG00000018001 ENSMUST00000110727 Cyth3 protein_coding Interval_64674 chr16 14066437 14067760 + 0 NA promoter-TSS (ENSMUSG00000083536.1) processed_pseudogene-promoter-TSS (ENSMUSG00000083536.1) -305 ENSMUSG00000083536.1 ENSMUSG00000083536 ENSMUST00000119046 Gm15808 processed_pseudogene Interval_166729 chr9 62302070 62302886 + 0 NA intron (ENSMUSG00000111193.1, intron 1 of 7) lincRNA-intron (ENSMUSG00000111193.1, intron 1 of 7) 3976 ENSMUSG00000111193.1 ENSMUSG00000111193 ENSMUST00000216565 Gm35288 lincRNA Interval_136012 chr6 49519009 49519415 + 0 NA Intergenic Intergenic 24515 ENSMUSG00000108266.1 ENSMUSG00000108266 ENSMUST00000204010 Gm5305 processed_pseudogene Interval_117336 chr4 123060786 123061306 + 0 NA Intergenic Intergenic 32982 ENSMUSG00000086153.1 ENSMUSG00000086153 ENSMUST00000127060 Gm12923 antisense Interval_58035 chr15 26894385 26896028 + 0 NA exon (ENSMUSG00000043556.10, exon 1 of 4) protein_coding-exon (ENSMUSG00000043556.10, exon 1 of 4) 312 ENSMUSG00000043556.10 ENSMUSG00000043556 ENSMUST00000226377 Fbxl7 protein_coding Interval_10843 chr1 175906245 175906741 + 0 NA TTS (ENSMUSG00000039748.11) protein_coding-TTS (ENSMUSG00000039748.11) 1948 ENSMUSG00000094820.1 ENSMUSG00000094820 ENSMUST00000180129 Gm23805 snRNA Interval_90664 chr2 31765908 31766304 + 0 NA intron (ENSMUSG00000026842.16, intron 1 of 2) protein_coding-intron (ENSMUSG00000026842.16, intron 1 of 10) 44474 ENSMUSG00000043102.2 ENSMUSG00000043102 ENSMUST00000057407 Qrfp protein_coding Interval_169781 chr9 101220349 101220682 + 0 NA intron (ENSMUSG00000043154.15, intron 1 of 13) protein_coding-intron (ENSMUSG00000043154.15, intron 1 of 13) -2437 ENSMUSG00000077393.1 ENSMUSG00000077393 ENSMUST00000104205 Gm24338 snoRNA Interval_97732 chr2 143610273 143610545 + 0 NA intron (ENSMUSG00000027419.9, intron 2 of 11) protein_coding-intron (ENSMUSG00000027419.9, intron 2 of 11) 64138 ENSMUSG00000027419.9 ENSMUSG00000027419 ENSMUST00000124751 Pcsk2 protein_coding Interval_121123 chr4 153243696 153243994 + 0 NA Intergenic Intergenic 25669 ENSMUSG00000087454.1 ENSMUSG00000087454 ENSMUST00000126141 Gm13174 lincRNA Interval_59632 chr15 56809998 56810279 + 0 NA Intergenic Intergenic -26710 ENSMUSG00000115493.1 ENSMUSG00000115493 ENSMUST00000228866 Gm5673 processed_pseudogene Interval_55889 chr14 101805989 101806303 + 0 NA intron (ENSMUSG00000033060.16, intron 2 of 30) protein_coding-intron (ENSMUSG00000033060.16, intron 2 of 30) -34361 ENSMUSG00000033060.16 ENSMUSG00000033060 ENSMUST00000160038 Lmo7 protein_coding Interval_6711 chr1 118935424 118935847 + 0 NA intron (ENSMUSG00000048402.14, intron 2 of 6) protein_coding-intron (ENSMUSG00000048402.14, intron 2 of 13) -18585 ENSMUSG00000098273.1 ENSMUSG00000098273 ENSMUST00000183982 Mir6346 miRNA Interval_136228 chr6 52175245 52176445 + 0 NA intron (ENSMUSG00000085696.8, intron 1 of 2) protein_coding-intron (ENSMUSG00000079560.13, intron 3 of 4) 628 ENSMUSG00000085696.8 ENSMUSG00000085696 ENSMUST00000131502 Hoxaas3 antisense Interval_9864 chr1 163403191 163404250 + 0 NA promoter-TSS (ENSMUSG00000040124.5) protein_coding-promoter-TSS (ENSMUSG00000040124.5) -64 ENSMUSG00000040124.5 ENSMUSG00000040124 ENSMUST00000185299 Gorab protein_coding Interval_143723 chr7 15929910 15930802 + 0 NA Intergenic Intergenic -7954 ENSMUSG00000041571.9 ENSMUSG00000041571 ENSMUST00000044355 Selenow protein_coding Interval_134870 chr6 32931226 32931601 + 0 NA intron (ENSMUSG00000053768.13, intron 4 of 7) protein_coding-intron (ENSMUSG00000053768.13, intron 4 of 7) -34342 ENSMUSG00000053768.13 ENSMUSG00000053768 ENSMUST00000115091 Chchd3 protein_coding Interval_161659 chr8 121849958 121853364 + 0 NA promoter-TSS (ENSMUSG00000097812.1) lincRNA-promoter-TSS (ENSMUSG00000097812.1) 1467 ENSMUSG00000097812.1 ENSMUSG00000097812 ENSMUST00000181647 Gm26812 lincRNA Interval_6176 chr1 99663402 99664576 + 0 NA Intergenic Intergenic -23748 ENSMUSG00000099453.1 ENSMUSG00000099453 ENSMUST00000191164 Gm18248 processed_pseudogene Interval_118872 chr4 134193484 134194526 + 0 NA intron (ENSMUSG00000073747.2, intron 4 of 7) protein_coding-intron (ENSMUSG00000073747.2, intron 4 of 7) 6145 ENSMUSG00000081772.1 ENSMUSG00000081772 ENSMUST00000122228 Gm13131 processed_pseudogene Interval_56123 chr14 106105914 106107583 + 0 NA exon (ENSMUSG00000022113.6, exon 1 of 1) protein_coding-exon (ENSMUSG00000022113.6, exon 1 of 1) 549 ENSMUSG00000022113.6 ENSMUSG00000022113 ENSMUST00000194236 Trim52 protein_coding Interval_35564 chr12 24843789 24844603 + 0 NA intron (ENSMUSG00000020646.17, intron 1 of 9) protein_coding-intron (ENSMUSG00000020646.17, intron 1 of 9) 12565 ENSMUSG00000020646.17 ENSMUSG00000020646 ENSMUST00000222994 Mboat2 protein_coding Interval_154141 chr8 13010221 13010515 + 0 NA intron (ENSMUSG00000031442.21, intron 20 of 27) protein_coding-intron (ENSMUSG00000031442.21, intron 21 of 29) -11573 ENSMUSG00000081951.1 ENSMUSG00000081951 ENSMUST00000118696 Gm15352 processed_pseudogene Interval_131664 chr5 139145828 139146974 + 0 NA intron (ENSMUSG00000025855.13, intron 1 of 2) protein_coding-intron (ENSMUSG00000025855.13, intron 1 of 2) 3600 ENSMUSG00000025855.13 ENSMUSG00000025855 ENSMUST00000130180 Prkar1b protein_coding Interval_172267 chrX 12127180 12129604 + 0 NA promoter-TSS (ENSMUSG00000040363.15) protein_coding-promoter-TSS (ENSMUSG00000040363.15) 31954 ENSMUSG00000040363.15 ENSMUSG00000040363 ENSMUST00000209776 Bcor protein_coding Interval_93517 chr2 73730379 73730672 + 0 NA intron (ENSMUSG00000056486.18, intron 1 of 9) protein_coding-intron (ENSMUSG00000056486.18, intron 1 of 12) 72255 ENSMUSG00000085838.1 ENSMUSG00000085838 ENSMUST00000123613 Chn1os1 antisense Interval_113804 chr4 58934622 58936152 + 0 NA Intergenic Intergenic -2638 ENSMUSG00000092753.1 ENSMUSG00000092753 ENSMUST00000175012 Gm26400 rRNA Interval_90596 chr2 31345889 31346857 + 0 NA intron (ENSMUSG00000055632.18, intron 7 of 97) protein_coding-intron (ENSMUSG00000055632.18, intron 7 of 97) 31958 ENSMUSG00000055632.18 ENSMUSG00000055632 ENSMUST00000141294 Hmcn2 protein_coding Interval_93197 chr2 71093613 71093951 + 0 NA exon (ENSMUSG00000041966.18, exon 14 of 14) protein_coding-exon (ENSMUSG00000041966.18, exon 14 of 14) -24141 ENSMUSG00000027015.4 ENSMUSG00000027015 ENSMUST00000028403 Cybrd1 protein_coding Interval_121037 chr4 152355516 152356006 + 0 NA intron (ENSMUSG00000005045.16, intron 3 of 40) protein_coding-intron (ENSMUSG00000005045.16, intron 3 of 40) -2120 ENSMUSG00000085179.1 ENSMUSG00000085179 ENSMUST00000145163 Gm13645 processed_transcript Interval_10538 chr1 171586043 171586309 + 0 NA TTS (ENSMUSG00000004709.14) protein_coding-TTS (ENSMUSG00000004709.14) 7113 ENSMUSG00000004709.14 ENSMUSG00000004709 ENSMUST00000195804 Cd244a protein_coding Interval_25351 chr11 46596474 46597984 + 0 NA Intergenic Intergenic 25693 ENSMUSG00000046974.6 ENSMUSG00000046974 ENSMUST00000050937 BC053393 protein_coding Interval_151124 chr7 118705160 118706335 + 0 NA promoter-TSS (ENSMUSG00000033917.15) protein_coding-promoter-TSS (ENSMUSG00000033917.15) 1 ENSMUSG00000033917.15 ENSMUSG00000033917 ENSMUST00000207323 Gde1 protein_coding Interval_167001 chr9 64407629 64407834 + 0 NA intron (ENSMUSG00000036466.17, intron 1 of 24) protein_coding-intron (ENSMUSG00000036466.17, intron 1 of 24) 22105 ENSMUSG00000036466.17 ENSMUSG00000036466 ENSMUST00000153934 Megf11 protein_coding Interval_137412 chr6 72013294 72013474 + 0 NA TTS (ENSMUSG00000108356.1) lincRNA-TTS (ENSMUSG00000108356.1) 29144 ENSMUSG00000108356.1 ENSMUSG00000108356 ENSMUST00000206867 9130221F21Rik lincRNA Interval_20117 chr10 115012625 115012863 + 0 NA Intergenic Intergenic 21203 ENSMUSG00000096208.1 ENSMUSG00000096208 ENSMUST00000178475 Gm22070 snRNA Interval_135717 chr6 44731046 44731658 + 0 NA Intergenic Intergenic -63917 ENSMUSG00000107953.1 ENSMUSG00000107953 ENSMUST00000204867 Gm44211 processed_pseudogene Interval_25285 chr11 46119782 46120203 + 0 NA intron (ENSMUSG00000011256.16, intron 8 of 22) protein_coding-intron (ENSMUSG00000011256.16, intron 8 of 22) -14130 ENSMUSG00000011256.16 ENSMUSG00000011256 ENSMUST00000153410 Adam19 protein_coding Interval_87319 chr19 47648243 47648827 + 0 NA intron (ENSMUSG00000025064.15, intron 2 of 2) protein_coding-intron (ENSMUSG00000025064.15, intron 50 of 53) 20887 ENSMUSG00000025060.15 ENSMUSG00000025060 ENSMUST00000147841 Slk protein_coding Interval_78194 chr18 10049117 10050359 + 0 NA Intergenic Intergenic -4633 ENSMUSG00000047879.17 ENSMUSG00000047879 ENSMUST00000150321 Usp14 protein_coding Interval_107315 chr3 105726072 105726540 + 0 NA TTS (ENSMUSG00000068798.10) protein_coding-TTS (ENSMUSG00000068798.10) 841 ENSMUSG00000106317.1 ENSMUSG00000106317 ENSMUST00000198060 Gm43848 lincRNA Interval_43572 chr13 33683043 33684262 + 0 NA Intergenic Intergenic -2805 ENSMUSG00000082986.1 ENSMUSG00000082986 ENSMUST00000121407 Gm11389 unprocessed_pseudogene Interval_152094 chr7 129221784 129222100 + 0 NA Intergenic Intergenic -35105 ENSMUSG00000070366.5 ENSMUSG00000070366 ENSMUST00000205896 Plpp4 protein_coding Interval_47252 chr13 79765483 79765973 + 0 NA Intergenic Intergenic -72349 ENSMUSG00000114505.1 ENSMUSG00000114505 ENSMUST00000223593 Gm48471 processed_pseudogene Interval_157793 chr8 73281658 73282125 + 0 NA intron (ENSMUSG00000004383.18, intron 1 of 14) protein_coding-intron (ENSMUSG00000004383.18, intron 1 of 14) 71649 ENSMUSG00000004383.18 ENSMUSG00000004383 ENSMUST00000146249 Large1 protein_coding Interval_168677 chr9 85748548 85750006 + 0 NA promoter-TSS (ENSMUSG00000035941.15) protein_coding-promoter-TSS (ENSMUSG00000035941.15) 199 ENSMUSG00000103715.1 ENSMUSG00000103715 ENSMUST00000195799 4933431K14Rik TEC Interval_44060 chr13 40639399 40639653 + 0 NA Intergenic Intergenic 5123 ENSMUSG00000114322.1 ENSMUSG00000114322 ENSMUST00000225346 Gm47041 TEC Interval_158710 chr8 85478450 85478805 + 0 NA Intergenic Intergenic -40782 ENSMUSG00000031700.11 ENSMUSG00000031700 ENSMUST00000143846 Gpt2 protein_coding Interval_95845 chr2 117210517 117211209 + 0 NA Intergenic Intergenic 25736 ENSMUSG00000076376.1 ENSMUSG00000076376 ENSMUST00000102421 Mir674 miRNA Interval_39980 chr12 100216917 100217924 + 0 NA Intergenic Intergenic 17891 ENSMUSG00000001175.16 ENSMUSG00000001175 ENSMUST00000127300 Calm1 protein_coding Interval_125217 chr5 65428258 65429647 + 0 NA promoter-TSS (ENSMUSG00000029201.14) protein_coding-promoter-TSS (ENSMUSG00000029201.14) 2628 ENSMUSG00000104917.1 ENSMUSG00000104917 ENSMUST00000200537 Gm43289 TEC Interval_64595 chr16 13568043 13568600 + 0 NA intron (ENSMUSG00000022685.9, intron 22 of 23) protein_coding-intron (ENSMUSG00000022685.9, intron 21 of 23) -36770 ENSMUSG00000077488.1 ENSMUSG00000077488 ENSMUST00000104300 Gm25276 snoRNA Interval_118632 chr4 132901024 132901246 + 0 NA exon (ENSMUSG00000028878.11, exon 9 of 9) protein_coding-exon (ENSMUSG00000028878.11, exon 9 of 9) 16372 ENSMUSG00000083816.3 ENSMUSG00000083816 ENSMUST00000117591 Gm13033 processed_pseudogene Interval_148037 chr7 78643797 78644157 + 0 NA intron (ENSMUSG00000059146.12, intron 6 of 7) protein_coding-intron (ENSMUSG00000059146.12, intron 1 of 2) 65147 ENSMUSG00000052629.5 ENSMUSG00000052629 ENSMUST00000186234 Gm9885 antisense Interval_165145 chr9 44805725 44806185 + 0 NA exon (ENSMUSG00000002028.13, exon 36 of 36) protein_coding-exon (ENSMUSG00000002028.13, exon 36 of 36) -4143 ENSMUSG00000039438.7 ENSMUSG00000039438 ENSMUST00000216449 Ttc36 protein_coding Interval_135664 chr6 42709316 42710227 + 0 NA intron (ENSMUSG00000036667.14, intron 1 of 2) protein_coding-intron (ENSMUSG00000036667.14, intron 1 of 8) 300 ENSMUSG00000036667.14 ENSMUSG00000036667 ENSMUST00000153952 Tcaf1 protein_coding Interval_130000 chr5 123626290 123626874 + 0 NA intron (ENSMUSG00000049550.17, intron 7 of 21) protein_coding-intron (ENSMUSG00000049550.17, intron 11 of 24) -1619 ENSMUSG00000084552.1 ENSMUSG00000084552 ENSMUST00000122603 Gm24840 snRNA Interval_72678 chr17 31503539 31504023 + 0 NA promoter-TSS (ENSMUSG00000024037.13) protein_coding-promoter-TSS (ENSMUSG00000024037.13) -8223 ENSMUSG00000118049.1 ENSMUSG00000118049 ENSMUST00000235946 Gm50103 antisense Interval_130605 chr5 129161312 129162461 + 0 NA intron (ENSMUSG00000044017.16, intron 13 of 24) protein_coding-intron (ENSMUSG00000044017.16, intron 14 of 25) -33369 ENSMUSG00000060419.8 ENSMUSG00000060419 ENSMUST00000140155 Rps16-ps2 processed_pseudogene Interval_10864 chr1 176269243 176269825 + 0 NA intron (ENSMUSG00000055214.15, intron 1 of 1) protein_coding-intron (ENSMUSG00000055214.15, intron 1 of 9) -6679 ENSMUSG00000104157.1 ENSMUSG00000104157 ENSMUST00000193484 Gm38101 lincRNA Interval_136237 chr6 52221328 52222457 + 0 NA promoter-TSS (ENSMUSG00000038236.8) protein_coding-promoter-TSS (ENSMUSG00000038236.8) -1499 ENSMUSG00000038236.8 ENSMUSG00000038236 ENSMUST00000140316 Hoxa7 protein_coding Interval_63789 chr15 103422751 103423131 + 0 NA intron (ENSMUSG00000022487.14, intron 3 of 8) protein_coding-intron (ENSMUSG00000022487.14, intron 3 of 8) 7408 ENSMUSG00000022487.14 ENSMUSG00000022487 ENSMUST00000129837 Gtsf1 protein_coding Interval_69129 chr16 90829859 90831642 + 0 NA promoter-TSS (ENSMUSG00000039903.18) protein_coding-promoter-TSS (ENSMUSG00000039903.18) 4031 ENSMUSG00000039903.18 ENSMUSG00000039903 ENSMUST00000154180 Eva1c protein_coding Interval_167912 chr9 74142018 74142277 + 0 NA exon (ENSMUSG00000044976.17, exon 4 of 4) protein_coding-exon (ENSMUSG00000044976.17, exon 4 of 4) 31791 ENSMUSG00000044976.17 ENSMUSG00000044976 ENSMUST00000149439 Wdr72 protein_coding Interval_105108 chr3 81314346 81315018 + 0 NA Intergenic Intergenic 90890 ENSMUSG00000102223.1 ENSMUSG00000102223 ENSMUST00000193327 Gm37300 processed_pseudogene Interval_111251 chr4 15997621 15997879 + 0 NA exon (ENSMUSG00000041153.9, exon 6 of 6) protein_coding-exon (ENSMUSG00000041153.9, exon 6 of 6) 14576 ENSMUSG00000084408.1 ENSMUSG00000084408 ENSMUST00000119255 Gm11870 processed_pseudogene Interval_120783 chr4 150626276 150627008 + 0 NA Intergenic Intergenic 11227 ENSMUSG00000039852.17 ENSMUSG00000039852 ENSMUST00000136646 Rere protein_coding Interval_5665 chr1 90650366 90651335 + 0 NA Intergenic Intergenic -24311 ENSMUSG00000056128.3 ENSMUSG00000056128 ENSMUST00000070048 Gm9991 lincRNA Interval_163229 chr9 18733753 18734910 + 0 NA Intergenic Intergenic 29665 ENSMUSG00000054141.5 ENSMUSG00000054141 ENSMUST00000066997 Olfr24 protein_coding Interval_121955 chr5 12502786 12503468 + 0 NA intron (ENSMUSG00000040254.11, intron 5 of 16) protein_coding-intron (ENSMUSG00000040254.11, intron 5 of 17) -23499 ENSMUSG00000105854.1 ENSMUSG00000105854 ENSMUST00000197212 Gm8925 processed_pseudogene Interval_33916 chr11 119389740 119390855 + 0 NA promoter-TSS (ENSMUSG00000088015.1) miRNA-promoter-TSS (ENSMUSG00000088015.1) -175 ENSMUSG00000088015.1 ENSMUSG00000088015 ENSMUST00000157390 Mir1932 miRNA Interval_101996 chr3 14628714 14629257 + 0 NA TTS (ENSMUSG00000104249.1) processed_pseudogene-TTS (ENSMUSG00000104249.1) 255 ENSMUSG00000104249.1 ENSMUSG00000104249 ENSMUST00000195085 Gm38151 processed_pseudogene Interval_51923 chr14 33955463 33956785 + 0 NA exon (ENSMUSG00000041534.9, exon 1 of 4) protein_coding-exon (ENSMUSG00000041534.9, exon 1 of 4) 2121 ENSMUSG00000041534.9 ENSMUSG00000041534 ENSMUST00000035695 Rbp3 protein_coding Interval_115598 chr4 101264399 101265762 + 0 NA exon (ENSMUSG00000028530.14, exon 1 of 25) protein_coding-exon (ENSMUSG00000028530.14, exon 1 of 25) 201 ENSMUSG00000028530.14 ENSMUSG00000028530 ENSMUST00000125968 Jak1 protein_coding Interval_12696 chr10 4362346 4363152 + 0 NA Intergenic Intergenic 11126 ENSMUSG00000075327.10 ENSMUSG00000075327 ENSMUST00000215860 Zbtb2 protein_coding Interval_123392 chr5 32152872 32153105 + 0 NA exon (ENSMUSG00000029135.10, exon 4 of 4) protein_coding-exon (ENSMUSG00000029135.10, exon 4 of 4) 6467 ENSMUSG00000029135.10 ENSMUSG00000029135 ENSMUST00000202169 Fosl2 protein_coding Interval_174581 chrX 159414183 159415640 + 0 NA intron (ENSMUSG00000041020.14, intron 1 of 16) protein_coding-intron (ENSMUSG00000041020.14, intron 1 of 16) -4401 ENSMUSG00000083437.1 ENSMUSG00000083437 ENSMUST00000122329 Gm15187 processed_pseudogene Interval_63654 chr15 102583203 102583988 + 0 NA intron (ENSMUSG00000099083.7, intron 2 of 2) protein_coding-intron (ENSMUSG00000099083.7, intron 2 of 10) 41472 ENSMUSG00000052414.9 ENSMUSG00000052414 ENSMUST00000184772 Gm28047 protein_coding Interval_162167 chr8 125665337 125666668 + 0 NA Intergenic Intergenic -3816 ENSMUSG00000050930.5 ENSMUSG00000050930 ENSMUST00000053078 Map10 protein_coding Interval_83878 chr19 5300431 5300999 + 0 NA intron (ENSMUSG00000047658.6, intron 1 of 2) protein_coding-intron (ENSMUSG00000047658.6, intron 1 of 2) 2384 ENSMUSG00000047658.6 ENSMUSG00000047658 ENSMUST00000061169 Gal3st3 protein_coding Interval_71233 chr17 21466277 21467225 + 0 NA Intergenic Intergenic 16377 ENSMUSG00000023892.8 ENSMUSG00000023892 ENSMUST00000039577 Zfp51 protein_coding Interval_40377 chr12 104512360 104512695 + 0 NA intron (ENSMUSG00000112954.1, intron 2 of 2) lincRNA-intron (ENSMUSG00000112954.1, intron 2 of 2) -7441 ENSMUSG00000112954.1 ENSMUSG00000112954 ENSMUST00000222329 Gm49732 lincRNA Interval_79307 chr18 30325892 30327038 + 0 NA intron (ENSMUSG00000033628.15, intron 21 of 24) protein_coding-intron (ENSMUSG00000033628.15, intron 21 of 23) 53538 ENSMUSG00000033628.15 ENSMUSG00000033628 ENSMUST00000131405 Pik3c3 protein_coding Interval_3814 chr1 63230859 63231851 + 0 NA Intergenic Intergenic -17132 ENSMUSG00000046856.13 ENSMUSG00000046856 ENSMUST00000187533 Gpr1 protein_coding Interval_93140 chr2 70552309 70552697 + 0 NA promoter-TSS (ENSMUSG00000070880.10) protein_coding-promoter-TSS (ENSMUSG00000070880.10) -9660 ENSMUSG00000070880.10 ENSMUSG00000070880 ENSMUST00000140478 Gad1 protein_coding Interval_90441 chr2 30459004 30459695 + 0 NA Intergenic Intergenic 14870 ENSMUSG00000089762.3 ENSMUSG00000089762 ENSMUST00000065134 Ier5l protein_coding Interval_266 KZ289068.1 419586 420613 + 0 NA NA NA NA NA Interval_100202 chr2 167611389 167611714 + 0 NA promoter-TSS (ENSMUSG00000078923.10) protein_coding-promoter-TSS (ENSMUSG00000078923.10) 20156 ENSMUSG00000081511.1 ENSMUSG00000081511 ENSMUST00000118482 Gm11475 processed_pseudogene Interval_168115 chr9 77152359 77152830 + 0 NA intron (ENSMUSG00000032355.16, intron 10 of 12) protein_coding-intron (ENSMUSG00000032355.16, intron 7 of 7) 55403 ENSMUSG00000099138.1 ENSMUSG00000099138 ENSMUST00000183550 Gm5746 processed_pseudogene Interval_116310 chr4 109634844 109635189 + 0 NA intron (ENSMUSG00000087641.1, intron 2 of 2) processed_transcript-intron (ENSMUSG00000087641.1, intron 2 of 2) 5434 ENSMUSG00000082771.1 ENSMUSG00000082771 ENSMUST00000118907 Gm12803 processed_pseudogene Interval_154387 chr8 15221298 15222074 + 0 NA intron (ENSMUSG00000110286.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000110286.1, intron 1 of 2) 5851 ENSMUSG00000077503.1 ENSMUSG00000077503 ENSMUST00000104315 Gm24231 snoRNA Interval_117642 chr4 125217499 125217762 + 0 NA Intergenic Intergenic -10967 ENSMUSG00000087010.1 ENSMUSG00000087010 ENSMUST00000130055 1700041M05Rik lincRNA Interval_111700 chr4 26263621 26263837 + 0 NA Intergenic Intergenic 83162 ENSMUSG00000040520.7 ENSMUSG00000040520 ENSMUST00000153813 Manea protein_coding Interval_109353 chr3 139590692 139590922 + 0 NA intron (ENSMUSG00000047940.13, intron 12 of 13) protein_coding-intron (ENSMUSG00000047940.13, intron 12 of 13) -58572 ENSMUSG00000106574.1 ENSMUSG00000106574 ENSMUST00000199447 Gm2451 processed_pseudogene Interval_83475 chr18 86462949 86463571 + 0 NA intron (ENSMUSG00000050321.3, intron 6 of 10) protein_coding-intron (ENSMUSG00000050321.3, intron 6 of 10) 10669 ENSMUSG00000117778.1 ENSMUSG00000117778 ENSMUST00000236142 Gm50384 antisense Interval_171354 chr9 116919163 116919971 + 0 NA intron (ENSMUSG00000039607.17, intron 4 of 4) protein_coding-intron (ENSMUSG00000039607.17, intron 4 of 12) -139591 ENSMUSG00000092184.1 ENSMUSG00000092184 ENSMUST00000172565 Gm18489 processed_pseudogene Interval_15750 chr10 55977522 55978743 + 0 NA Intergenic Intergenic 123871 ENSMUSG00000112528.1 ENSMUSG00000112528 ENSMUST00000218919 Gm29794 processed_pseudogene Interval_168516 chr9 82935664 82936109 + 0 NA intron (ENSMUSG00000032253.13, intron 4 of 10) protein_coding-intron (ENSMUSG00000032253.13, intron 7 of 39) -34773 ENSMUSG00000032253.13 ENSMUSG00000032253 ENSMUST00000190838 Phip protein_coding Interval_129771 chr5 122235477 122236133 + 0 NA intron (ENSMUSG00000064267.13, intron 4 of 5) protein_coding-intron (ENSMUSG00000064267.13, intron 4 of 7) -17197 ENSMUSG00000082645.3 ENSMUSG00000082645 ENSMUST00000120264 Gm15481 processed_pseudogene Interval_52899 chr14 51929785 51931463 + 0 NA promoter-TSS (ENSMUSG00000115698.1) lincRNA-promoter-TSS (ENSMUSG00000115698.1) -964 ENSMUSG00000115698.1 ENSMUSG00000115698 ENSMUST00000227552 Gm49076 lincRNA Interval_68819 chr16 87353796 87355090 + 0 NA intron (ENSMUSG00000044442.11, intron 1 of 3) protein_coding-intron (ENSMUSG00000044442.11, intron 1 of 5) 200 ENSMUSG00000044442.11 ENSMUSG00000044442 ENSMUST00000118115 N6amt1 protein_coding Interval_61745 chr15 83760619 83761175 + 0 NA Intergenic Intergenic -31117 ENSMUSG00000041708.12 ENSMUSG00000041708 ENSMUST00000148868 Mpped1 protein_coding Interval_105971 chr3 90363458 90365229 + 0 NA TTS (ENSMUSG00000042390.9) protein_coding-TTS (ENSMUSG00000042390.9) 12925 ENSMUSG00000042390.9 ENSMUSG00000042390 ENSMUST00000206907 Gatad2b protein_coding Interval_83097 chr18 81241626 81242309 + 0 NA Intergenic Intergenic -5901 ENSMUSG00000097181.1 ENSMUSG00000097181 ENSMUST00000181204 4930594M17Rik lincRNA Interval_112377 chr4 40922818 40923553 + 0 NA intron (ENSMUSG00000028415.4, intron 1 of 1) protein_coding-intron (ENSMUSG00000028415.4, intron 1 of 3) 3131 ENSMUSG00000028415.4 ENSMUSG00000028415 ENSMUST00000132943 Spink4 protein_coding Interval_69006 chr16 90084145 90085024 + 0 NA intron (ENSMUSG00000002489.16, intron 1 of 11) protein_coding-intron (ENSMUSG00000002489.16, intron 1 of 11) -5399 ENSMUSG00000116536.1 ENSMUSG00000116536 ENSMUST00000232386 Gm2805 processed_pseudogene Interval_73278 chr17 35939028 35940259 + 0 NA Intergenic Intergenic -3693 ENSMUSG00000049832.6 ENSMUSG00000049832 ENSMUST00000173786 Rbx1-ps processed_pseudogene Interval_101085 chr2 177497659 177498833 + 0 NA promoter-TSS (ENSMUSG00000094786.1) protein_coding-promoter-TSS (ENSMUSG00000094786.1) 31 ENSMUSG00000094786.1 ENSMUSG00000094786 ENSMUST00000108940 Gm14403 protein_coding Interval_113673 chr4 57455256 57455555 + 0 NA TTS (ENSMUSG00000081615.1) processed_pseudogene-TTS (ENSMUSG00000081615.1) 2144 ENSMUSG00000081615.1 ENSMUSG00000081615 ENSMUST00000121549 Gm12539 processed_pseudogene Interval_170990 chr9 113528675 113530177 + 0 NA promoter-TSS (ENSMUSG00000111388.1) processed_pseudogene-promoter-TSS (ENSMUSG00000111388.1) -803 ENSMUSG00000111388.1 ENSMUSG00000111388 ENSMUST00000213870 Gm7183 processed_pseudogene Interval_164561 chr9 38693102 38694328 + 0 NA Intergenic Intergenic 9517 ENSMUSG00000056961.2 ENSMUSG00000056961 ENSMUST00000071425 Olfr919 protein_coding Interval_111425 chr4 21563484 21563786 + 0 NA Intergenic Intergenic -62745 ENSMUSG00000083654.1 ENSMUSG00000083654 ENSMUST00000118187 Gm11875 processed_pseudogene Interval_118823 chr4 133910087 133911351 + 0 NA Intergenic Intergenic -24436 ENSMUSG00000003644.17 ENSMUSG00000003644 ENSMUST00000173961 Rps6ka1 protein_coding Interval_119574 chr4 138449162 138450151 + 0 NA Intergenic Intergenic -4658 ENSMUSG00000046447.3 ENSMUSG00000046447 ENSMUST00000050918 Camk2n1 protein_coding Interval_93041 chr2 69752807 69753429 + 0 NA exon (ENSMUSG00000042133.16, exon 14 of 14) protein_coding-exon (ENSMUSG00000042133.16, exon 14 of 14) -13064 ENSMUSG00000083007.1 ENSMUSG00000083007 ENSMUST00000118359 Gm13623 processed_pseudogene Interval_126060 chr5 77158254 77159036 + 0 NA Intergenic Intergenic -18393 ENSMUSG00000106783.1 ENSMUSG00000106783 ENSMUST00000201649 Chaer1 lincRNA Interval_129651 chr5 121536864 121537720 + 0 NA promoter-TSS (ENSMUSG00000029454.15) protein_coding-promoter-TSS (ENSMUSG00000029454.15) -6397 ENSMUSG00000082265.1 ENSMUSG00000082265 ENSMUST00000122152 Gm15547 processed_pseudogene Interval_86506 chr19 41247923 41248145 + 0 NA intron (ENSMUSG00000025016.11, intron 2 of 14) protein_coding-intron (ENSMUSG00000025016.11, intron 2 of 13) 15946 ENSMUSG00000025016.11 ENSMUSG00000025016 ENSMUST00000237871 Tm9sf3 protein_coding Interval_47514 chr13 86097153 86098484 + 0 NA Intergenic Intergenic -51471 ENSMUSG00000017778.14 ENSMUSG00000017778 ENSMUST00000017922 Cox7c protein_coding Interval_44608 chr13 46683168 46683522 + 0 NA intron (ENSMUSG00000021374.10, intron 1 of 1) protein_coding-intron (ENSMUSG00000021374.10, intron 19 of 21) 12154 ENSMUSG00000069237.8 ENSMUSG00000069237 ENSMUST00000150376 Fam8a1 protein_coding Interval_39251 chr12 86187978 86190210 + 0 NA intron (ENSMUSG00000097543.1, intron 4 of 4) lincRNA-intron (ENSMUSG00000097543.1, intron 4 of 4) 19753 ENSMUSG00000097543.1 ENSMUSG00000097543 ENSMUST00000181667 Gm805 lincRNA Interval_100521 chr2 169873772 169874079 + 0 NA intron (ENSMUSG00000047907.11, intron 1 of 2) protein_coding-intron (ENSMUSG00000047907.11, intron 1 of 1) -10968 ENSMUSG00000047907.11 ENSMUSG00000047907 ENSMUST00000140699 Tshz2 protein_coding Interval_79937 chr18 36067923 36069909 + 0 NA promoter-TSS (ENSMUSG00000060275.14) protein_coding-promoter-TSS (ENSMUSG00000060275.14) -291 ENSMUSG00000060275.14 ENSMUSG00000060275 ENSMUST00000115705 Nrg2 protein_coding Interval_18588 chr10 88224348 88225223 + 0 NA intron (ENSMUSG00000020056.16, intron 4 of 5) protein_coding-intron (ENSMUSG00000020056.16, intron 5 of 6) 23522 ENSMUSG00000020056.16 ENSMUSG00000020056 ENSMUST00000182211 Washc3 protein_coding Interval_135340 chr6 38477175 38477386 + 0 NA intron (ENSMUSG00000038538.17, intron 6 of 14) protein_coding-intron (ENSMUSG00000038538.17, intron 7 of 16) -30045 ENSMUSG00000098285.1 ENSMUSG00000098285 ENSMUST00000183689 Mir7670 miRNA Interval_50665 chr14 17810846 17811116 + 0 NA intron (ENSMUSG00000021779.17, intron 1 of 1) protein_coding-intron (ENSMUSG00000021779.17, intron 1 of 9) -39859 ENSMUSG00000114281.1 ENSMUSG00000114281 ENSMUST00000225878 Gm48320 processed_pseudogene Interval_27386 chr11 67152635 67152835 + 0 NA Intergenic Intergenic -18292 ENSMUSG00000033196.17 ENSMUSG00000033196 ENSMUST00000018641 Myh2 protein_coding Interval_120800 chr4 150718386 150718610 + 0 NA Intergenic Intergenic -39706 ENSMUSG00000085869.1 ENSMUSG00000085869 ENSMUST00000149065 Gm16079 lincRNA Interval_171235 chr9 115480643 115481095 + 0 NA Intergenic Intergenic -42288 ENSMUSG00000074034.1 ENSMUSG00000074034 ENSMUST00000075898 Gm5921 processed_pseudogene Interval_27562 chr11 68728644 68729281 + 0 NA intron (ENSMUSG00000020900.15, intron 3 of 12) protein_coding-intron (ENSMUSG00000020900.15, intron 3 of 42) 36808 ENSMUSG00000020900.15 ENSMUSG00000020900 ENSMUST00000139059 Myh10 protein_coding Interval_19940 chr10 111401286 111401666 + 0 NA Intergenic Intergenic 64352 ENSMUSG00000112246.1 ENSMUSG00000112246 ENSMUST00000219123 Gm40761 lincRNA Interval_33275 chr11 115608947 115610427 + 0 NA intron (ENSMUSG00000020743.15, intron 1 of 4) protein_coding-intron (ENSMUSG00000020743.15, intron 2 of 5) 2439 ENSMUSG00000020743.15 ENSMUSG00000020743 ENSMUST00000139556 Mif4gd protein_coding Interval_38317 chr12 77106075 77106327 + 0 NA Intergenic Intergenic 10231 ENSMUSG00000093114.1 ENSMUSG00000093114 ENSMUST00000175373 Gm22696 miRNA Interval_34039 chr11 120141523 120141932 + 0 NA intron (ENSMUSG00000061306.16, intron 1 of 6) protein_coding-intron (ENSMUSG00000061306.16, intron 2 of 15) -8835 ENSMUSG00000085636.1 ENSMUSG00000085636 ENSMUST00000140273 Gm11769 processed_transcript Interval_156158 chr8 45251996 45252347 + 0 NA exon (ENSMUSG00000031645.4, exon 5 of 15) protein_coding-exon (ENSMUSG00000031645.4, exon 5 of 15) 9860 ENSMUSG00000031645.4 ENSMUSG00000031645 ENSMUST00000210622 F11 protein_coding Interval_144266 chr7 24126029 24126521 + 0 NA exon (ENSMUSG00000052675.11, exon 5 of 5) protein_coding-exon (ENSMUSG00000052675.11, exon 5 of 5) 7906 ENSMUSG00000052675.11 ENSMUSG00000052675 ENSMUST00000215113 Zfp112 protein_coding Interval_8424 chr1 139146861 139147505 + 0 NA intron (ENSMUSG00000056268.15, intron 17 of 19) protein_coding-intron (ENSMUSG00000056268.15, intron 18 of 20) -7969 ENSMUSG00000102243.1 ENSMUSG00000102243 ENSMUST00000191655 Gm37718 TEC Interval_153576 chr8 3493035 3493739 + 0 NA intron (ENSMUSG00000047264.8, intron 1 of 1) protein_coding-intron (ENSMUSG00000047264.8, intron 1 of 1) -1622 ENSMUSG00000047264.8 ENSMUSG00000047264 ENSMUST00000208423 Zfp358 protein_coding Interval_113093 chr4 48087076 48088004 + 0 NA Intergenic Intergenic -37383 ENSMUSG00000061455.13 ENSMUSG00000061455 ENSMUST00000064765 Stx17 protein_coding Interval_3204 chr1 54807948 54808535 + 0 NA intron (ENSMUSG00000052331.14, intron 2 of 7) protein_coding-intron (ENSMUSG00000052331.14, intron 2 of 27) 39023 ENSMUSG00000089245.1 ENSMUSG00000089245 ENSMUST00000158620 Gm24053 miRNA Interval_106649 chr3 98098246 98099617 + 0 NA intron (ENSMUSG00000027878.11, intron 6 of 7) protein_coding-intron (ENSMUSG00000027878.11, intron 6 of 33) -22657 ENSMUSG00000106427.1 ENSMUSG00000106427 ENSMUST00000200084 Gm42820 TEC Interval_133540 chr6 6247758 6248890 + 0 NA promoter-TSS (ENSMUSG00000093482.8) lincRNA-promoter-TSS (ENSMUSG00000093482.8) -335 ENSMUSG00000093482.8 ENSMUSG00000093482 ENSMUST00000181343 Gm20619 lincRNA Interval_42966 chr13 21944673 21945787 + 0 NA promoter-TSS (ENSMUSG00000006720.16) protein_coding-promoter-TSS (ENSMUSG00000006720.16) -33 ENSMUSG00000085393.1 ENSMUSG00000085393 ENSMUST00000124912 Gm11280 bidirectional_promoter_lncRNA Interval_73436 chr17 37242015 37242310 + 0 NA Intergenic Intergenic -4832 ENSMUSG00000058802.5 ENSMUSG00000058802 ENSMUST00000207414 Olfr97 protein_coding Interval_134636 chr6 30083252 30085006 + 0 NA intron (ENSMUSG00000058440.14, intron 1 of 12) protein_coding-intron (ENSMUSG00000058440.14, intron 1 of 12) -5766 ENSMUSG00000058440.14 ENSMUSG00000058440 ENSMUST00000132866 Nrf1 protein_coding Interval_100091 chr2 167026795 167028843 + 0 NA TTS (ENSMUSG00000017999.16) protein_coding-TTS (ENSMUSG00000017999.16) 12509 ENSMUSG00000017999.16 ENSMUSG00000017999 ENSMUST00000127468 Ddx27 protein_coding Interval_36639 chr12 51699807 51700351 + 0 NA intron (ENSMUSG00000020955.9, intron 1 of 5) protein_coding-intron (ENSMUSG00000020955.9, intron 1 of 5) 9046 ENSMUSG00000020955.9 ENSMUSG00000020955 ENSMUST00000021338 Ap4s1 protein_coding Interval_29424 chr11 83916734 83916953 + 0 NA Intergenic Intergenic -29412 ENSMUSG00000020677.7 ENSMUSG00000020677 ENSMUST00000130982 Ddx52 protein_coding Interval_43683 chr13 34972613 34974106 + 0 NA intron (ENSMUSG00000085962.8, intron 3 of 3) antisense-intron (ENSMUSG00000085962.8, intron 3 of 4) 9301 ENSMUSG00000085962.8 ENSMUSG00000085962 ENSMUST00000171079 Gm16984 antisense Interval_63496 chr15 101459151 101459609 + 0 NA exon (ENSMUSG00000067615.4, exon 9 of 9) protein_coding-exon (ENSMUSG00000067615.4, exon 9 of 9) 4134 ENSMUSG00000067615.4 ENSMUSG00000067615 ENSMUST00000230541 Krt81 protein_coding Interval_14248 chr10 29619463 29619849 + 0 NA Intergenic Intergenic -5080 ENSMUSG00000111046.1 ENSMUSG00000111046 ENSMUST00000217530 Gm46197 processed_pseudogene Interval_154459 chr8 18157133 18158165 + 0 NA Intergenic Intergenic 117172 ENSMUSG00000088320.1 ENSMUSG00000088320 ENSMUST00000157695 Gm25665 snoRNA Interval_2805 chr1 45589964 45590986 + 0 NA Intergenic Intergenic -11551 ENSMUSG00000100894.1 ENSMUSG00000100894 ENSMUST00000185744 Gm8304 processed_pseudogene Interval_52910 chr14 52008410 52009566 + 0 NA TTS (ENSMUSG00000049295.17) protein_coding-TTS (ENSMUSG00000049295.17) 1587 ENSMUSG00000049295.17 ENSMUSG00000049295 ENSMUST00000227420 Zfp219 protein_coding Interval_36229 chr12 40009768 40010125 + 0 NA intron (ENSMUSG00000047446.18, intron 3 of 7) protein_coding-intron (ENSMUSG00000047446.18, intron 3 of 4) 27483 ENSMUSG00000047446.18 ENSMUSG00000047446 ENSMUST00000101472 Arl4a protein_coding Interval_170774 chr9 110676518 110676808 + 0 NA intron (ENSMUSG00000019659.8, intron 1 of 5) protein_coding-intron (ENSMUSG00000019659.8, intron 1 of 6) -1709 ENSMUSG00000104945.1 ENSMUSG00000104945 ENSMUST00000197421 Gm35715 antisense Interval_38469 chr12 79236582 79237248 + 0 NA promoter-TSS (ENSMUSG00000066440.5) protein_coding-promoter-TSS (ENSMUSG00000066440.5) 7496 ENSMUSG00000066440.5 ENSMUSG00000066440 ENSMUST00000219571 Zfyve26 protein_coding Interval_77986 chr18 6456496 6457305 + 0 NA intron (ENSMUSG00000024240.13, intron 2 of 13) protein_coding-intron (ENSMUSG00000024240.13, intron 2 of 13) -15006 ENSMUSG00000024240.13 ENSMUSG00000024240 ENSMUST00000050542 Epc1 protein_coding Interval_73330 chr17 36243997 36245379 + 0 NA Intergenic Intergenic -2582 ENSMUSG00000084750.1 ENSMUSG00000084750 ENSMUST00000122801 Gm22453 misc_RNA Interval_29406 chr11 83797061 83797572 + 0 NA Intergenic Intergenic -3148 ENSMUSG00000081342.1 ENSMUSG00000081342 ENSMUST00000122379 Gm11434 processed_pseudogene Interval_115488 chr4 99342352 99343160 + 0 NA Intergenic Intergenic 42956 ENSMUSG00000103097.1 ENSMUSG00000103097 ENSMUST00000193877 Gm37556 TEC Interval_18098 chr10 82382990 82383212 + 0 NA intron (ENSMUSG00000073427.4, intron 3 of 4) protein_coding-intron (ENSMUSG00000073427.4, intron 3 of 7) 28846 ENSMUSG00000073427.4 ENSMUSG00000073427 ENSMUST00000165906 Gm4924 protein_coding Interval_166287 chr9 58060509 58061650 + 0 NA intron (ENSMUSG00000037716.15, intron 10 of 19) protein_coding-intron (ENSMUSG00000037716.15, intron 10 of 18) 28805 ENSMUSG00000086624.1 ENSMUSG00000086624 ENSMUST00000153106 Gm16130 antisense Interval_169337 chr9 96503986 96504881 + 0 NA intron (ENSMUSG00000099564.2, intron 7 of 10) protein_coding-intron (ENSMUSG00000099564.2, intron 7 of 10) -9220 ENSMUSG00000099049.1 ENSMUSG00000099049 ENSMUST00000183341 Gm27289 rRNA Interval_160779 chr8 112176769 112177179 + 0 NA Intergenic Intergenic 59992 ENSMUSG00000110435.1 ENSMUSG00000110435 ENSMUST00000212314 Gm3635 processed_pseudogene Interval_97181 chr2 132075613 132075864 + 0 NA intron (ENSMUSG00000027340.15, intron 1 of 1) protein_coding-intron (ENSMUSG00000027340.15, intron 7 of 15) 2270 ENSMUSG00000027340.15 ENSMUSG00000027340 ENSMUST00000128899 Slc23a2 protein_coding Interval_82131 chr18 67916020 67916257 + 0 NA Intergenic Intergenic 8510 ENSMUSG00000118326.1 ENSMUSG00000118326 ENSMUST00000235570 Gm8887 processed_pseudogene Interval_118404 chr4 131167380 131168393 + 0 NA Intergenic Intergenic -71391 ENSMUSG00000088041.1 ENSMUSG00000088041 ENSMUST00000157416 Gm25261 snoRNA Interval_33630 chr11 117629654 117630525 + 0 NA Intergenic Intergenic 18842 ENSMUSG00000054418.6 ENSMUSG00000054418 ENSMUST00000155384 2900041M22Rik processed_transcript Interval_114948 chr4 87472674 87474124 + 0 NA Intergenic Intergenic 41127 ENSMUSG00000093065.1 ENSMUSG00000093065 ENSMUST00000175324 Gm23154 miRNA Interval_117013 chr4 119011366 119011987 + 0 NA Intergenic Intergenic -11191 ENSMUSG00000087464.1 ENSMUSG00000087464 ENSMUST00000150754 Gm12862 lincRNA Interval_59795 chr15 59332818 59334268 + 0 NA intron (ENSMUSG00000022350.7, intron 18 of 18) protein_coding-intron (ENSMUSG00000022350.7, intron 28 of 28) 18466 ENSMUSG00000022351.14 ENSMUSG00000022351 ENSMUST00000161953 Sqle protein_coding Interval_18474 chr10 86452043 86453394 + 0 NA intron (ENSMUSG00000059602.14, intron 2 of 8) protein_coding-intron (ENSMUSG00000059602.14, intron 2 of 13) 39179 ENSMUSG00000059602.14 ENSMUSG00000059602 ENSMUST00000139197 Syn3 protein_coding Interval_150350 chr7 109798085 109798634 + 0 NA TTS (ENSMUSG00000007279.14) protein_coding-TTS (ENSMUSG00000007279.14) 9872 ENSMUSG00000007279.14 ENSMUSG00000007279 ENSMUST00000138946 Scube2 protein_coding Interval_53878 chr14 63066219 63067190 + 0 NA Intergenic Intergenic -16749 ENSMUSG00000075571.8 ENSMUSG00000075571 ENSMUST00000100490 Defb30 protein_coding Interval_100124 chr2 167201856 167202099 + 0 NA TTS (ENSMUSG00000017969.13) protein_coding-TTS (ENSMUSG00000017969.13) 401 ENSMUSG00000086098.1 ENSMUSG00000086098 ENSMUST00000143645 Gm14291 antisense Interval_2030 chr1 36001007 36002408 + 0 NA Intergenic Intergenic 9283 ENSMUSG00000103708.1 ENSMUSG00000103708 ENSMUST00000194823 Gm33222 lincRNA Interval_159210 chr8 91710820 91711394 + 0 NA exon (ENSMUSG00000110216.1, exon 3 of 3) lincRNA-exon (ENSMUSG00000110216.1, exon 3 of 3) 3306 ENSMUSG00000110216.1 ENSMUSG00000110216 ENSMUST00000210487 Gm36325 lincRNA Interval_81525 chr18 61397693 61400924 + 0 NA intron (ENSMUSG00000033871.14, intron 1 of 1) protein_coding-intron (ENSMUSG00000033871.14, intron 1 of 12) 1092 ENSMUSG00000033871.14 ENSMUSG00000033871 ENSMUST00000142134 Ppargc1b protein_coding Interval_158481 chr8 83972248 83973421 + 0 NA promoter-TSS (ENSMUSG00000005469.10) protein_coding-promoter-TSS (ENSMUSG00000005469.10) -4049 ENSMUSG00000005469.10 ENSMUSG00000005469 ENSMUST00000211558 Prkaca protein_coding Interval_138657 chr6 90852308 90852888 + 0 NA intron (ENSMUSG00000034312.15, intron 2 of 15) protein_coding-intron (ENSMUSG00000034312.15, intron 2 of 15) -4939 ENSMUSG00000088379.1 ENSMUSG00000088379 ENSMUST00000157754 Gm25185 snoRNA Interval_84311 chr19 9998657 10000780 + 0 NA intron (ENSMUSG00000037418.6, intron 1 of 11) protein_coding-intron (ENSMUSG00000037418.6, intron 1 of 11) -1148 ENSMUSG00000037418.6 ENSMUSG00000037418 ENSMUST00000144273 Best1 protein_coding Interval_164921 chr9 43105181 43106634 + 0 NA promoter-TSS (ENSMUSG00000059495.14) protein_coding-promoter-TSS (ENSMUSG00000059495.14) 10629 ENSMUSG00000048503.7 ENSMUSG00000048503 ENSMUST00000216126 Tlcd5 protein_coding Interval_63584 chr15 102202980 102205050 + 0 NA promoter-TSS (ENSMUSG00000046897.17) protein_coding-promoter-TSS (ENSMUSG00000046897.17) -563 ENSMUSG00000046897.17 ENSMUSG00000046897 ENSMUST00000119830 Zfp740 protein_coding Interval_40914 chr12 109858923 109860716 + 0 NA Intergenic Intergenic 32816 ENSMUSG00000113711.1 ENSMUSG00000113711 ENSMUST00000221611 Gm9661 processed_pseudogene Interval_76299 chr17 78889571 78889929 + 0 NA intron (ENSMUSG00000038045.14, intron 5 of 6) protein_coding-intron (ENSMUSG00000038045.14, intron 5 of 6) -7202 ENSMUSG00000024079.4 ENSMUSG00000024079 ENSMUST00000171451 Eif2ak2 protein_coding Interval_104520 chr3 67351846 67353034 + 0 NA exon (ENSMUSG00000034544.17, exon 8 of 8) protein_coding-exon (ENSMUSG00000034544.17, exon 8 of 8) -21685 ENSMUSG00000048416.15 ENSMUSG00000048416 ENSMUST00000061322 Mlf1 protein_coding Interval_101129 chr2 178233476 178233930 + 0 NA intron (ENSMUSG00000027525.18, intron 1 of 12) protein_coding-intron (ENSMUSG00000027525.18, intron 1 of 12) -93853 ENSMUSG00000027525.18 ENSMUSG00000027525 ENSMUST00000133267 Phactr3 protein_coding Interval_129208 chr5 118195897 118196432 + 0 NA intron (ENSMUSG00000032850.16, intron 1 of 1) protein_coding-intron (ENSMUSG00000032850.16, intron 11 of 11) 15178 ENSMUSG00000089248.1 ENSMUSG00000089248 ENSMUST00000158623 Gm24050 misc_RNA Interval_49901 chr13 118037116 118037304 + 0 NA TTS (ENSMUSG00000088155.1) snoRNA-TTS (ENSMUSG00000088155.1) 596 ENSMUSG00000088155.1 ENSMUSG00000088155 ENSMUST00000157530 Gm26349 snoRNA Interval_130040 chr5 123856474 123856660 + 0 NA Intergenic Intergenic 8932 ENSMUSG00000045502.6 ENSMUSG00000045502 ENSMUST00000057145 Hcar2 protein_coding Interval_127460 chr5 104092377 104092657 + 0 NA TTS (ENSMUSG00000029309.7) protein_coding-TTS (ENSMUSG00000029309.7) -14925 ENSMUSG00000091034.8 ENSMUSG00000091034 ENSMUST00000178967 Gm17660 protein_coding Interval_151865 chr7 127207928 127209421 + 0 NA promoter-TSS (ENSMUSG00000042492.12) protein_coding-promoter-TSS (ENSMUSG00000042492.12) -225 ENSMUSG00000030672.12 ENSMUSG00000030672 ENSMUST00000139613 Mylpf protein_coding Interval_121093 chr4 152895151 152895782 + 0 NA Intergenic Intergenic 118118 ENSMUSG00000080360.1 ENSMUSG00000080360 ENSMUST00000116710 Gm25779 miRNA Interval_163499 chr9 21733366 21733867 + 0 NA exon (ENSMUSG00000032193.9, exon 4 of 18) protein_coding-exon (ENSMUSG00000032193.9, exon 4 of 18) -2491 ENSMUSG00000032193.9 ENSMUSG00000032193 ENSMUST00000214549 Ldlr protein_coding Interval_16381 chr10 62608334 62609487 + 0 NA Intergenic Intergenic 6560 ENSMUSG00000112347.1 ENSMUSG00000112347 ENSMUST00000218594 Gm47257 bidirectional_promoter_lncRNA Interval_38795 chr12 82393518 82393921 + 0 NA intron (ENSMUSG00000042700.16, intron 8 of 21) protein_coding-intron (ENSMUSG00000042700.16, intron 7 of 20) 102818 ENSMUSG00000094374.2 ENSMUSG00000094374 ENSMUST00000179295 Gm5435 processed_pseudogene Interval_93793 chr2 76932176 76932683 + 0 NA promoter-TSS (ENSMUSG00000051747.15) protein_coding-promoter-TSS (ENSMUSG00000051747.15) 90267 ENSMUSG00000044033.16 ENSMUSG00000044033 ENSMUST00000111833 Ccdc141 protein_coding Interval_137376 chr6 71798608 71798827 + 0 NA intron (ENSMUSG00000052852.8, intron 4 of 4) protein_coding-intron (ENSMUSG00000052852.8, intron 6 of 6) -4171 ENSMUSG00000108594.1 ENSMUSG00000108594 ENSMUST00000205395 Gm44770 TEC Interval_103062 chr3 34800690 34800888 + 0 NA Intergenic Intergenic -25827 ENSMUSG00000114832.2 ENSMUSG00000114832 ENSMUST00000238552 Gm21388 lincRNA Interval_103485 chr3 44113146 44113365 + 0 NA Intergenic Intergenic 157534 ENSMUSG00000103148.1 ENSMUSG00000103148 ENSMUST00000193249 Gm37746 TEC Interval_47649 chr13 90768519 90768873 + 0 NA Intergenic Intergenic 8584 ENSMUSG00000106360.1 ENSMUSG00000106360 ENSMUST00000198614 Gm44338 miRNA Interval_59939 chr15 62112726 62113227 + 0 NA intron (ENSMUSG00000097039.8, intron 2 of 6) lincRNA-intron (ENSMUSG00000097039.8, intron 2 of 8) 5789 ENSMUSG00000099295.1 ENSMUSG00000099295 ENSMUST00000183721 Gm27718 misc_RNA Interval_165191 chr9 45133651 45134207 + 0 NA intron (ENSMUSG00000074385.3, intron 1 of 2) lincRNA-intron (ENSMUSG00000074385.3, intron 1 of 2) 903 ENSMUSG00000074385.3 ENSMUSG00000074385 ENSMUST00000217151 Gm10684 lincRNA Interval_59369 chr15 51951225 51952941 + 0 NA Intergenic Intergenic 39427 ENSMUSG00000022314.10 ENSMUSG00000022314 ENSMUST00000226529 Rad21 protein_coding Interval_103974 chr3 55780126 55780946 + 0 NA exon (ENSMUSG00000027799.12, exon 1 of 1) protein_coding-exon (ENSMUSG00000027799.12, exon 1 of 1) -1974 ENSMUSG00000056947.5 ENSMUSG00000056947 ENSMUST00000075422 Mab21l1 protein_coding Interval_7718 chr1 133253269 133253712 + 0 NA TTS (ENSMUSG00000101693.1) antisense-TTS (ENSMUSG00000101693.1) -3052 ENSMUSG00000041757.17 ENSMUSG00000041757 ENSMUST00000190208 Plekha6 protein_coding Interval_106591 chr3 97563075 97563887 + 0 NA exon (ENSMUSG00000028089.5, exon 21 of 23) protein_coding-exon (ENSMUSG00000028089.5, exon 21 of 23) -46451 ENSMUSG00000105004.1 ENSMUSG00000105004 ENSMUST00000198613 Gm43075 TEC Interval_168803 chr9 87191758 87192407 + 0 NA exon (ENSMUSG00000056919.9, exon 27 of 27) protein_coding-exon (ENSMUSG00000056919.9, exon 27 of 27) -2669 ENSMUSG00000102830.1 ENSMUSG00000102830 ENSMUST00000194991 Gm37012 TEC Interval_158879 chr8 87662569 87663796 + 0 NA intron (ENSMUSG00000045333.15, intron 5 of 5) protein_coding-intron (ENSMUSG00000045333.15, intron 6 of 6) 26525 ENSMUSG00000089301.1 ENSMUSG00000089301 ENSMUST00000158676 Gm24841 misc_RNA Interval_136076 chr6 50529295 50530197 + 0 NA Intergenic Intergenic 10288 ENSMUSG00000077357.1 ENSMUSG00000077357 ENSMUST00000104169 Gm26289 snoRNA Interval_117335 chr4 123058183 123058537 + 0 NA Intergenic Intergenic 35668 ENSMUSG00000086153.1 ENSMUSG00000086153 ENSMUST00000127060 Gm12923 antisense Interval_55080 chr14 77792577 77793614 + 0 NA TTS (ENSMUSG00000075512.5) lincRNA-TTS (ENSMUSG00000075512.5) 5873 ENSMUSG00000075512.5 ENSMUSG00000075512 ENSMUST00000228721 Gm1587 lincRNA Interval_66956 chr16 38797981 38799051 + 0 NA intron (ENSMUSG00000049436.5, intron 1 of 7) protein_coding-intron (ENSMUSG00000049436.5, intron 1 of 7) -15474 ENSMUSG00000081444.1 ENSMUSG00000081444 ENSMUST00000120118 Gm15803 processed_pseudogene Interval_62519 chr15 94156910 94157105 + 0 NA Intergenic Intergenic -192299 ENSMUSG00000115965.1 ENSMUSG00000115965 ENSMUST00000229885 Gm30564 lincRNA Interval_134424 chr6 28554885 28556820 + 0 NA intron (ENSMUSG00000001424.14, intron 10 of 16) protein_coding-intron (ENSMUSG00000001424.14, intron 10 of 23) -7638 ENSMUSG00000104325.1 ENSMUSG00000104325 ENSMUST00000195742 Gm37321 TEC Interval_141421 chr6 128149384 128149691 + 0 NA Intergenic Intergenic 17385 ENSMUSG00000108220.1 ENSMUSG00000108220 ENSMUST00000204623 Gm44056 TEC Interval_55973 chr14 103503589 103504536 + 0 NA exon (ENSMUSG00000115762.1, exon 2 of 3) lincRNA-exon (ENSMUSG00000115762.1, exon 2 of 3) -9280 ENSMUSG00000022123.9 ENSMUSG00000022123 ENSMUST00000095576 Scel protein_coding Interval_81970 chr18 66503809 66504398 + 0 NA promoter-TSS (ENSMUSG00000118376.1) lincRNA-promoter-TSS (ENSMUSG00000118376.1) -75 ENSMUSG00000118376.1 ENSMUSG00000118376 ENSMUST00000235580 Gm9926 lincRNA Interval_70289 chr17 8244018 8244468 + 0 NA promoter-TSS (ENSMUSG00000040899.14) protein_coding-promoter-TSS (ENSMUSG00000040899.14) -815 ENSMUSG00000040899.14 ENSMUSG00000040899 ENSMUST00000231545 Ccr6 protein_coding Interval_148714 chr7 84498084 84498968 + 0 NA Intergenic Intergenic -30612 ENSMUSG00000097789.2 ENSMUSG00000097789 ENSMUST00000208409 Gm2115 protein_coding Interval_173753 chrX 103459766 103460432 + 0 NA TTS (ENSMUSG00000086503.4) lincRNA-TTS (ENSMUSG00000086503.4) 1186 ENSMUSG00000099312.1 ENSMUSG00000099312 ENSMUST00000184803 Gm27733 misc_RNA Interval_129321 chr5 119075815 119076113 + 0 NA Intergenic Intergenic -32270 ENSMUSG00000100573.1 ENSMUSG00000100573 ENSMUST00000190550 1700081H04Rik lincRNA Interval_396 chr1 4866103 4866843 + 0 NA intron (ENSMUSG00000033813.15, intron 1 of 9) protein_coding-intron (ENSMUSG00000033813.15, intron 1 of 9) 8435 ENSMUSG00000033813.15 ENSMUSG00000033813 ENSMUST00000165720 Tcea1 protein_coding Interval_24683 chr11 35885148 35885544 + 0 NA intron (ENSMUSG00000018849.6, intron 8 of 22) protein_coding-intron (ENSMUSG00000018849.6, intron 8 of 22) -31792 ENSMUSG00000018849.6 ENSMUSG00000018849 ENSMUST00000127086 Wwc1 protein_coding Interval_20971 chr10 122894588 122895600 + 0 NA promoter-TSS (ENSMUSG00000034613.12) protein_coding-promoter-TSS (ENSMUSG00000034613.12) -274 ENSMUSG00000034613.12 ENSMUSG00000034613 ENSMUST00000162969 Ppm1h protein_coding Interval_147616 chr7 70053124 70053572 + 0 NA Intergenic Intergenic -95444 ENSMUSG00000077166.1 ENSMUSG00000077166 ENSMUST00000103978 Gm24120 snoRNA Interval_70269 chr17 7863888 7864923 + 0 NA Intergenic Intergenic -37103 ENSMUSG00000071984.11 ENSMUSG00000071984 ENSMUST00000167580 Fndc1 protein_coding Interval_137916 chr6 83342710 83342968 + 0 NA TTS (ENSMUSG00000043131.14) protein_coding-TTS (ENSMUSG00000043131.14) -8201 ENSMUSG00000045160.14 ENSMUSG00000045160 ENSMUST00000148875 Bola3 protein_coding Interval_63999 chr16 5145498 5147365 + 0 NA promoter-TSS (ENSMUSG00000091712.2) protein_coding-promoter-TSS (ENSMUSG00000091712.2) -678 ENSMUSG00000091712.2 ENSMUSG00000091712 ENSMUST00000230616 Sec14l5 protein_coding Interval_3033 chr1 52399528 52400290 + 0 NA Intergenic Intergenic 44635 ENSMUSG00000065192.1 ENSMUSG00000065192 ENSMUST00000083258 Gm23460 snRNA Interval_104552 chr3 67786388 67786799 + 0 NA Intergenic Intergenic -43296 ENSMUSG00000104477.1 ENSMUSG00000104477 ENSMUST00000192744 Gm18717 processed_pseudogene Interval_3585 chr1 59757009 59757293 + 0 NA Intergenic Intergenic -44112 ENSMUSG00000104052.1 ENSMUSG00000104052 ENSMUST00000194136 Gm38125 TEC Interval_88977 chr2 13898849 13899526 + 0 NA intron (ENSMUSG00000063275.15, intron 7 of 7) protein_coding-intron (ENSMUSG00000063275.15, intron 7 of 7) -105894 ENSMUSG00000003418.11 ENSMUSG00000003418 ENSMUST00000150781 St8sia6 protein_coding Interval_90988 chr2 33957892 33958104 + 0 NA Intergenic Intergenic -15853 ENSMUSG00000085987.2 ENSMUSG00000085987 ENSMUST00000134271 Gm13403 lincRNA Interval_85589 chr19 28871892 28872396 + 0 NA intron (ENSMUSG00000024935.11, intron 1 of 1) protein_coding-intron (ENSMUSG00000024935.11, intron 1 of 11) -8437 ENSMUSG00000089993.1 ENSMUSG00000089993 ENSMUST00000161562 Gm5822 processed_pseudogene Interval_105889 chr3 89936115 89937258 + 0 NA Intergenic Intergenic 9786 ENSMUSG00000060671.12 ENSMUSG00000060671 ENSMUST00000171422 Atp8b2 protein_coding Interval_152979 chr7 140228512 140229080 + 0 NA TTS (ENSMUSG00000025461.11) protein_coding-TTS (ENSMUSG00000025461.11) 10529 ENSMUSG00000025461.11 ENSMUSG00000025461 ENSMUST00000209840 Cd163l1 protein_coding Interval_100864 chr2 172979470 172980242 + 0 NA promoter-TSS (ENSMUSG00000005883.15) protein_coding-promoter-TSS (ENSMUSG00000005883.15) -6021 ENSMUSG00000005883.15 ENSMUSG00000005883 ENSMUST00000156471 Spo11 protein_coding Interval_103296 chr3 38250599 38251097 + 0 NA Intergenic Intergenic 17236 ENSMUSG00000092986.2 ENSMUSG00000092986 ENSMUST00000175245 Gm25574 misc_RNA Interval_57378 chr15 10415690 10416055 + 0 NA Intergenic Intergenic 36038 ENSMUSG00000044224.16 ENSMUSG00000044224 ENSMUST00000147224 Dnajc21 protein_coding Interval_75227 chr17 64916789 64917510 + 0 NA Intergenic Intergenic 27703 ENSMUSG00000077691.1 ENSMUSG00000077691 ENSMUST00000104503 Gm25344 snoRNA Interval_146747 chr7 49880078 49880723 + 0 NA Intergenic Intergenic -29899 ENSMUSG00000039728.15 ENSMUSG00000039728 ENSMUST00000107605 Slc6a5 protein_coding Interval_29308 chr11 82837818 82838966 + 0 NA intron (ENSMUSG00000020696.18, intron 1 of 7) protein_coding-intron (ENSMUSG00000020696.18, intron 2 of 7) 7700 ENSMUSG00000020696.18 ENSMUSG00000020696 ENSMUST00000126660 Rffl protein_coding Interval_96020 chr2 119218373 119218683 + 0 NA intron (ENSMUSG00000027317.8, intron 4 of 4) protein_coding-intron (ENSMUSG00000027317.8, intron 3 of 3) 6886 ENSMUSG00000068580.11 ENSMUSG00000068580 ENSMUST00000147584 Zfyve19 protein_coding Interval_10276 chr1 167888277 167889129 + 0 NA Intergenic Intergenic -115436 ENSMUSG00000093538.2 ENSMUSG00000093538 ENSMUST00000177351 Gm20711 antisense Interval_160298 chr8 107851769 107852242 + 0 NA Intergenic Intergenic 9554 ENSMUSG00000094718.1 ENSMUSG00000094718 ENSMUST00000179444 Gm22825 miRNA Interval_132149 chr5 142972806 142973198 + 0 NA TTS (ENSMUSG00000029581.14) protein_coding-TTS (ENSMUSG00000029581.14) 12626 ENSMUSG00000029581.14 ENSMUSG00000029581 ENSMUST00000135293 Fscn1 protein_coding Interval_112166 chr4 35098650 35100532 + 0 NA intron (ENSMUSG00000073910.10, intron 1 of 1) protein_coding-intron (ENSMUSG00000073910.10, intron 1 of 3) -52465 ENSMUSG00000042993.6 ENSMUSG00000042993 ENSMUST00000058595 Ifnk protein_coding Interval_51119 chr14 23622341 23622643 + 0 NA intron (ENSMUSG00000063142.15, intron 3 of 16) protein_coding-intron (ENSMUSG00000063142.15, intron 2 of 28) 62244 ENSMUSG00000100100.1 ENSMUSG00000100100 ENSMUST00000187439 Gm29626 antisense Interval_15170 chr10 43043112 43044364 + 0 NA intron (ENSMUSG00000111171.1, intron 1 of 2) protein_coding-intron (ENSMUSG00000038248.8, intron 5 of 6) 8745 ENSMUSG00000111171.1 ENSMUSG00000111171 ENSMUST00000213469 Gm47815 antisense Interval_23839 chr11 27000771 27000941 + 0 NA Intergenic Intergenic -50841 ENSMUSG00000083895.1 ENSMUSG00000083895 ENSMUST00000120189 Gm12074 processed_pseudogene Interval_70503 chr17 11092669 11093528 + 0 NA intron (ENSMUSG00000023826.16, intron 2 of 6) protein_coding-intron (ENSMUSG00000023826.16, intron 2 of 6) -3630 ENSMUSG00000100402.1 ENSMUSG00000100402 ENSMUST00000190466 Gm28505 antisense Interval_147025 chr7 58625152 58625514 + 0 NA Intergenic Intergenic -30833 ENSMUSG00000025324.8 ENSMUSG00000025324 ENSMUST00000168747 Atp10a protein_coding Interval_53150 chr14 54723601 54723802 + 0 NA exon (ENSMUSG00000022180.7, exon 11 of 11) protein_coding-exon (ENSMUSG00000022180.7, exon 11 of 11) -11527 ENSMUSG00000052435.7 ENSMUSG00000052435 ENSMUST00000064290 Cebpe protein_coding Interval_130691 chr5 129778756 129780360 + 0 NA promoter-TSS (ENSMUSG00000029446.14) protein_coding-promoter-TSS (ENSMUSG00000029446.14) 7649 ENSMUSG00000029446.14 ENSMUSG00000029446 ENSMUST00000202374 Psph protein_coding Interval_68889 chr16 87890729 87890995 + 0 NA Intergenic Intergenic 103290 ENSMUSG00000055972.5 ENSMUSG00000055972 ENSMUST00000189929 2810407A14Rik lincRNA Interval_56249 chr14 114952292 114952493 + 0 NA Intergenic Intergenic 6393 ENSMUSG00000114979.1 ENSMUSG00000114979 ENSMUST00000227718 Gm31072 lincRNA Interval_25566 chr11 49808959 49809225 + 0 NA exon (ENSMUSG00000020363.6, exon 4 of 19) protein_coding-exon (ENSMUSG00000020363.6, exon 4 of 19) 14914 ENSMUSG00000020363.6 ENSMUSG00000020363 ENSMUST00000020629 Gfpt2 protein_coding Interval_80656 chr18 45558147 45560944 + 0 NA promoter-TSS (ENSMUSG00000054477.16) protein_coding-promoter-TSS (ENSMUSG00000054477.16) 585 ENSMUSG00000118074.1 ENSMUSG00000118074 ENSMUST00000235309 Gm31907 transcribed_processed_pseudogene Interval_84796 chr19 16804437 16805345 + 0 NA Intergenic Intergenic 24344 ENSMUSG00000046388.4 ENSMUSG00000046388 ENSMUST00000051080 Gm9806 pseudogene Interval_46080 chr13 61185074 61185936 + 0 NA Intergenic Intergenic 17905 ENSMUSG00000021441.4 ENSMUSG00000021441 ENSMUST00000021890 Cts6 protein_coding Interval_20870 chr10 121625827 121627153 + 0 NA promoter-TSS (ENSMUSG00000034667.8) protein_coding-promoter-TSS (ENSMUSG00000034667.8) -7947 ENSMUSG00000092841.1 ENSMUSG00000092841 ENSMUST00000175100 Gm24330 miRNA Interval_162665 chr9 7648027 7648270 + 0 NA intron (ENSMUSG00000018620.3, intron 6 of 9) protein_coding-intron (ENSMUSG00000018620.3, intron 6 of 9) 19917 ENSMUSG00000018620.3 ENSMUSG00000018620 ENSMUST00000034487 Mmp20 protein_coding Interval_36808 chr12 54231154 54231368 + 0 NA Intergenic Intergenic -2354 ENSMUSG00000112821.1 ENSMUSG00000112821 ENSMUST00000220132 1700104L18Rik lincRNA Interval_166993 chr9 64367289 64367561 + 0 NA Intergenic Intergenic -18201 ENSMUSG00000036466.17 ENSMUSG00000036466 ENSMUST00000153934 Megf11 protein_coding Interval_117167 chr4 120186546 120187557 + 0 NA Intergenic Intergenic 25845 ENSMUSG00000028635.7 ENSMUSG00000028635 ENSMUST00000030384 Edn2 protein_coding Interval_131999 chr5 142122225 142122706 + 0 NA intron (ENSMUSG00000039683.16, intron 30 of 44) protein_coding-intron (ENSMUSG00000039683.16, intron 26 of 40) -160641 ENSMUSG00000097947.1 ENSMUSG00000097947 ENSMUST00000182990 Gm26970 processed_pseudogene Interval_125665 chr5 73145027 73145236 + 0 NA intron (ENSMUSG00000070733.13, intron 2 of 19) protein_coding-intron (ENSMUSG00000070733.13, intron 1 of 59) -11883 ENSMUSG00000086376.2 ENSMUSG00000086376 ENSMUST00000146728 1700071G01Rik antisense Interval_62275 chr15 89387178 89388770 + 0 NA exon (ENSMUSG00000091680.3, exon 1 of 1) protein_coding-exon (ENSMUSG00000091680.3, exon 1 of 1) 3057 ENSMUSG00000091680.3 ENSMUSG00000091680 ENSMUST00000166926 Klhdc7b protein_coding Interval_4264 chr1 72242565 72244841 + 0 NA promoter-TSS (ENSMUSG00000093956.1) snRNA-promoter-TSS (ENSMUSG00000093956.1) -510 ENSMUSG00000093956.1 ENSMUSG00000093956 ENSMUST00000177868 Gm24497 snRNA Interval_146432 chr7 45856888 45858166 + 0 NA exon (ENSMUSG00000002771.12, exon 5 of 12) protein_coding-exon (ENSMUSG00000002771.12, exon 5 of 12) 12902 ENSMUSG00000002771.12 ENSMUSG00000002771 ENSMUST00000211250 Grin2d protein_coding Interval_8907 chr1 152022383 152022640 + 0 NA intron (ENSMUSG00000032666.16, intron 1 of 6) protein_coding-intron (ENSMUSG00000032666.16, intron 1 of 5) 67459 ENSMUSG00000032666.16 ENSMUSG00000032666 ENSMUST00000121533 1700025G04Rik protein_coding Interval_155099 chr8 26475976 26476735 + 0 NA intron (ENSMUSG00000109961.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000109961.1, intron 1 of 2) -7515 ENSMUSG00000109961.1 ENSMUSG00000109961 ENSMUST00000209999 Gm31983 lincRNA Interval_48931 chr13 105047245 105047440 + 0 NA intron (ENSMUSG00000021719.9, intron 2 of 5) protein_coding-intron (ENSMUSG00000021719.9, intron 2 of 5) 7588 ENSMUSG00000021719.9 ENSMUSG00000021719 ENSMUST00000063551 Rgs7bp protein_coding Interval_86792 chr19 43909537 43909828 + 0 NA intron (ENSMUSG00000025195.9, intron 3 of 15) protein_coding-intron (ENSMUSG00000025195.9, intron 2 of 14) -10791 ENSMUSG00000118000.1 ENSMUSG00000118000 ENSMUST00000235838 Gm50217 lincRNA Interval_5619 chr1 90268029 90268291 + 0 NA Intergenic Intergenic -8040 ENSMUSG00000101951.1 ENSMUSG00000101951 ENSMUST00000187649 Gm28721 lincRNA Interval_5660 chr1 90615088 90615502 + 0 NA Intergenic Intergenic 11819 ENSMUSG00000034432.11 ENSMUSG00000034432 ENSMUST00000186882 Cops8 protein_coding Interval_78565 chr18 14766133 14766339 + 0 NA Intergenic Intergenic -17009 ENSMUSG00000054321.7 ENSMUSG00000054321 ENSMUST00000169862 Taf4b protein_coding Interval_40855 chr12 108885488 108886342 + 0 NA intron (ENSMUSG00000021266.16, intron 2 of 10) protein_coding-intron (ENSMUSG00000021266.16, intron 2 of 9) 7146 ENSMUSG00000112981.1 ENSMUSG00000112981 ENSMUST00000221779 5033424D13Rik TEC Interval_153796 chr8 8677982 8678447 + 0 NA intron (ENSMUSG00000040459.11, intron 2 of 2) protein_coding-intron (ENSMUSG00000040459.11, intron 3 of 3) 11890 ENSMUSG00000040459.11 ENSMUSG00000040459 ENSMUST00000207070 Arglu1 protein_coding Interval_113270 chr4 52833515 52834617 + 0 NA Intergenic Intergenic 8980 ENSMUSG00000110940.1 ENSMUSG00000110940 ENSMUST00000216601 Olfr274-ps1 unprocessed_pseudogene Interval_120740 chr4 150366723 150367107 + 0 NA intron (ENSMUSG00000039852.17, intron 1 of 22) protein_coding-intron (ENSMUSG00000039852.17, intron 1 of 22) 45722 ENSMUSG00000089292.1 ENSMUSG00000089292 ENSMUST00000158667 Gm23209 snRNA Interval_67677 chr16 55894729 55896022 + 0 NA promoter-TSS (ENSMUSG00000075033.4) protein_coding-promoter-TSS (ENSMUSG00000075033.4) -90 ENSMUSG00000075033.4 ENSMUSG00000075033 ENSMUST00000099705 Nxpe3 protein_coding Interval_104480 chr3 66331481 66332487 + 0 NA Intergenic Intergenic -32555 ENSMUSG00000117623.1 ENSMUSG00000117623 ENSMUST00000234873 Gm50014 unitary_pseudogene Interval_152732 chr7 136983218 136984051 + 0 NA intron (ENSMUSG00000054612.4, intron 2 of 4) protein_coding-intron (ENSMUSG00000054612.4, intron 2 of 4) 62693 ENSMUSG00000109721.1 ENSMUSG00000109721 ENSMUST00000210484 Gm45280 TEC Interval_161209 chr8 118656456 118657111 + 0 NA intron (ENSMUSG00000031841.19, intron 2 of 7) protein_coding-intron (ENSMUSG00000031841.19, intron 2 of 13) -40904 ENSMUSG00000110667.1 ENSMUSG00000110667 ENSMUST00000211881 Gm45720 antisense Interval_1099 chr1 15683785 15684056 + 0 NA intron (ENSMUSG00000092083.4, intron 2 of 2) protein_coding-intron (ENSMUSG00000092083.4, intron 1 of 1) 2126 ENSMUSG00000088829.1 ENSMUSG00000088829 ENSMUST00000158204 Gm25227 snoRNA Interval_120125 chr4 141981425 141982098 + 0 NA intron (ENSMUSG00000051435.11, intron 7 of 10) protein_coding-intron (ENSMUSG00000051435.11, intron 5 of 31) -1231 ENSMUSG00000085424.1 ENSMUSG00000085424 ENSMUST00000146094 Fhad1os1 antisense Interval_167723 chr9 72288552 72290100 + 0 NA promoter-TSS (ENSMUSG00000098492.1) processed_pseudogene-promoter-TSS (ENSMUSG00000098492.1) -341 ENSMUSG00000098492.1 ENSMUSG00000098492 ENSMUST00000184561 Gm19353 processed_pseudogene Interval_173112 chrX 72106765 72107545 + 0 NA Intergenic Intergenic -114862 ENSMUSG00000033343.1 ENSMUSG00000033343 ENSMUST00000048675 Magea4 protein_coding Interval_58166 chr15 30152249 30153015 + 0 NA Intergenic Intergenic -100076 ENSMUSG00000065726.1 ENSMUSG00000065726 ENSMUST00000083792 Gm26163 snoRNA Interval_127682 chr5 106602418 106603651 + 0 NA intron (ENSMUSG00000098302.1, intron 2 of 2) processed_transcript-intron (ENSMUSG00000098302.1, intron 2 of 2) -6064 ENSMUSG00000091096.1 ENSMUSG00000091096 ENSMUST00000167618 Gm17304 protein_coding Interval_82244 chr18 69564871 69565089 + 0 NA TTS (ENSMUSG00000053477.17) protein_coding-TTS (ENSMUSG00000053477.17) 13017 ENSMUSG00000088659.1 ENSMUSG00000088659 ENSMUST00000158034 Gm24845 rRNA Interval_168427 chr9 80209823 80210367 + 0 NA intron (ENSMUSG00000033577.18, intron 1 of 35) protein_coding-intron (ENSMUSG00000033577.18, intron 1 of 32) 44868 ENSMUSG00000033577.18 ENSMUSG00000033577 ENSMUST00000138650 Myo6 protein_coding Interval_163128 chr9 15493063 15494499 + 0 NA intron (ENSMUSG00000058173.12, intron 1 of 2) protein_coding-intron (ENSMUSG00000058173.12, intron 1 of 2) 349 ENSMUSG00000058173.12 ENSMUSG00000058173 ENSMUST00000178999 Smco4 protein_coding Interval_101315 chr2 180370371 180371440 + 0 NA exon (ENSMUSG00000084843.1, exon 7 of 7) lincRNA-exon (ENSMUSG00000084843.1, exon 7 of 7) 14980 ENSMUSG00000084843.1 ENSMUSG00000084843 ENSMUST00000145549 B230312C02Rik lincRNA Interval_88092 chr19 58998489 58999382 + 0 NA intron (ENSMUSG00000041362.17, intron 14 of 16) protein_coding-intron (ENSMUSG00000041362.17, intron 14 of 16) 39350 ENSMUSG00000041362.17 ENSMUSG00000041362 ENSMUST00000237215 Shtn1 protein_coding Interval_166489 chr9 60012532 60013126 + 0 NA intron (ENSMUSG00000032289.15, intron 7 of 16) protein_coding-intron (ENSMUSG00000032289.15, intron 2 of 11) 29350 ENSMUSG00000088090.1 ENSMUSG00000088090 ENSMUST00000157465 Gm23668 rRNA Interval_68723 chr16 85033387 85033880 + 0 NA intron (ENSMUSG00000022892.11, intron 6 of 15) protein_coding-intron (ENSMUSG00000022892.11, intron 6 of 15) -6008 ENSMUSG00000022892.11 ENSMUSG00000022892 ENSMUST00000228509 App protein_coding Interval_43409 chr13 30253709 30254186 + 0 NA Intergenic Intergenic 22094 ENSMUSG00000038732.15 ENSMUSG00000038732 ENSMUST00000222095 Mboat1 protein_coding Interval_91879 chr2 50971045 50971872 + 0 NA Intergenic Intergenic 61774 ENSMUSG00000083270.1 ENSMUSG00000083270 ENSMUST00000119159 Gm13498 processed_pseudogene Interval_12298 chr1 191497840 191498723 + 0 NA Intergenic Intergenic -4376 ENSMUSG00000103517.1 ENSMUSG00000103517 ENSMUST00000195294 Gm37432 lincRNA Interval_120489 chr4 148923631 148924531 + 0 NA intron (ENSMUSG00000028977.17, intron 2 of 3) protein_coding-intron (ENSMUSG00000028977.17, intron 4 of 15) -9757 ENSMUSG00000086766.1 ENSMUSG00000086766 ENSMUST00000151967 Gm15969 antisense Interval_58278 chr15 31586526 31586892 + 0 NA intron (ENSMUSG00000022235.15, intron 4 of 5) protein_coding-intron (ENSMUSG00000022235.15, intron 4 of 5) 14830 ENSMUSG00000022234.15 ENSMUSG00000022234 ENSMUST00000159121 Cct5 protein_coding Interval_97174 chr2 132004705 132005156 + 0 NA intron (ENSMUSG00000027339.15, intron 5 of 5) protein_coding-intron (ENSMUSG00000027339.15, intron 5 of 10) 16243 ENSMUSG00000027339.15 ENSMUSG00000027339 ENSMUST00000140791 Rassf2 protein_coding Interval_147685 chr7 71986636 71987251 + 0 NA intron (ENSMUSG00000108800.1, intron 2 of 2) lincRNA-intron (ENSMUSG00000108800.1, intron 2 of 2) -24925 ENSMUSG00000108480.1 ENSMUSG00000108480 ENSMUST00000205873 Gm36633 lincRNA Interval_122795 chr5 25554187 25557047 + 0 NA Intergenic Intergenic -23186 ENSMUSG00000105744.1 ENSMUSG00000105744 ENSMUST00000199695 Gm43141 processed_pseudogene Interval_142988 chr6 148073241 148074861 + 0 NA intron (ENSMUSG00000030303.15, intron 1 of 12) protein_coding-intron (ENSMUSG00000030303.15, intron 1 of 11) -6178 ENSMUSG00000089948.1 ENSMUSG00000089948 ENSMUST00000162391 Far2os1 antisense Interval_174591 chrX 159532097 159533347 + 0 NA promoter-TSS (ENSMUSG00000044150.12) protein_coding-promoter-TSS (ENSMUSG00000044150.12) -34816 ENSMUSG00000044150.12 ENSMUSG00000044150 ENSMUST00000154694 Bclaf3 protein_coding Interval_42093 chr13 8632937 8635027 + 0 NA intron (ENSMUSG00000052551.16, intron 3 of 10) protein_coding-intron (ENSMUSG00000052551.16, intron 3 of 9) 80962 ENSMUSG00000113742.1 ENSMUSG00000113742 ENSMUST00000220604 Gm48262 TEC Interval_108183 chr3 122270156 122271211 + 0 NA TTS (ENSMUSG00000028124.15) protein_coding-TTS (ENSMUSG00000028124.15) -6090 ENSMUSG00000039756.12 ENSMUSG00000039756 ENSMUST00000196338 Dnttip2 protein_coding Interval_72075 chr17 27858983 27859430 + 0 NA intron (ENSMUSG00000039512.12, intron 1 of 5) protein_coding-intron (ENSMUSG00000039512.12, intron 1 of 20) 2600 ENSMUSG00000039512.12 ENSMUSG00000039512 ENSMUST00000233409 Uhrf1bp1 protein_coding Interval_105085 chr3 81079579 81079762 + 0 NA intron (ENSMUSG00000028019.9, intron 1 of 5) protein_coding-intron (ENSMUSG00000028019.9, intron 1 of 5) -39233 ENSMUSG00000085106.1 ENSMUSG00000085106 ENSMUST00000146657 Gm16000 antisense Interval_37458 chr12 69127287 69127606 + 0 NA Intergenic Intergenic -2390 ENSMUSG00000113158.1 ENSMUSG00000113158 ENSMUST00000222345 Gm31447 lincRNA Interval_102138 chr3 18457844 18458237 + 0 NA intron (ENSMUSG00000102886.1, intron 1 of 5) lincRNA-intron (ENSMUSG00000102886.1, intron 1 of 5) 3214 ENSMUSG00000102886.1 ENSMUSG00000102886 ENSMUST00000193120 Gm30667 lincRNA Interval_47744 chr13 92212372 92212602 + 0 NA exon (ENSMUSG00000014850.15, exon 24 of 24) protein_coding-exon (ENSMUSG00000014850.15, exon 24 of 24) -80831 ENSMUSG00000021708.17 ENSMUSG00000021708 ENSMUST00000146492 Rasgrf2 protein_coding Interval_172893 chrX 52911872 52912876 + 0 NA promoter-TSS (ENSMUSG00000025626.16) protein_coding-promoter-TSS (ENSMUSG00000025626.16) -12197 ENSMUSG00000025626.16 ENSMUSG00000025626 ENSMUST00000179014 Phf6 protein_coding Interval_15783 chr10 56468653 56469531 + 0 NA intron (ENSMUSG00000112833.1, intron 4 of 5) lincRNA-intron (ENSMUSG00000112833.1, intron 4 of 5) -28249 ENSMUSG00000112825.1 ENSMUSG00000112825 ENSMUST00000219246 Gm9118 processed_pseudogene Interval_29416 chr11 83849566 83853685 + 0 NA promoter-TSS (ENSMUSG00000020679.11) protein_coding-promoter-TSS (ENSMUSG00000020679.11) -617 ENSMUSG00000020679.11 ENSMUSG00000020679 ENSMUST00000108113 Hnf1b protein_coding Interval_165184 chr9 45081886 45082213 + 0 NA intron (ENSMUSG00000048534.7, intron 1 of 4) protein_coding-intron (ENSMUSG00000048534.7, intron 1 of 10) -20745 ENSMUSG00000048534.7 ENSMUSG00000048534 ENSMUST00000215098 Jaml protein_coding Interval_40803 chr12 108509333 108509535 + 0 NA TTS (ENSMUSG00000058070.14) protein_coding-TTS (ENSMUSG00000058070.14) 37581 ENSMUSG00000058070.14 ENSMUSG00000058070 ENSMUST00000123035 Eml1 protein_coding Interval_110683 chr4 6420063 6420790 + 0 NA exon (ENSMUSG00000028245.15, exon 14 of 30) protein_coding-exon (ENSMUSG00000028245.15, exon 14 of 30) 33670 ENSMUSG00000028245.15 ENSMUSG00000028245 ENSMUST00000124656 Nsmaf protein_coding Interval_97772 chr2 143948798 143948992 + 0 NA intron (ENSMUSG00000027422.15, intron 4 of 5) protein_coding-intron (ENSMUSG00000027422.15, intron 22 of 23) 8750 ENSMUSG00000027422.15 ENSMUSG00000027422 ENSMUST00000037875 Rrbp1 protein_coding Interval_154960 chr8 25299144 25299550 + 0 NA Intergenic Intergenic 6923 ENSMUSG00000110140.1 ENSMUSG00000110140 ENSMUST00000209774 5430421F17Rik lincRNA Interval_58167 chr15 30157625 30158652 + 0 NA Intergenic Intergenic -105582 ENSMUSG00000065726.1 ENSMUSG00000065726 ENSMUST00000083792 Gm26163 snoRNA Interval_161029 chr8 117039421 117040201 + 0 NA intron (ENSMUSG00000034416.18, intron 23 of 42) protein_coding-intron (ENSMUSG00000034416.18, intron 23 of 42) 3314 ENSMUSG00000085688.1 ENSMUSG00000085688 ENSMUST00000153724 Gm15395 antisense Interval_71609 chr17 24841049 24841666 + 0 NA intron (ENSMUSG00000024158.17, intron 1 of 7) protein_coding-intron (ENSMUSG00000024158.17, intron 1 of 7) 9007 ENSMUSG00000045316.5 ENSMUSG00000045316 ENSMUST00000049642 Fahd1 protein_coding Interval_66386 chr16 33512586 33513082 + 0 NA Intergenic Intergenic -103556 ENSMUSG00000035506.16 ENSMUSG00000035506 ENSMUST00000149291 Slc12a8 protein_coding Interval_36027 chr12 33424283 33424614 + 0 NA Intergenic Intergenic -5187 ENSMUSG00000020561.8 ENSMUSG00000020561 ENSMUST00000219758 Twistnb protein_coding Interval_80113 chr18 37694286 37695127 + 0 NA exon (ENSMUSG00000103567.1, exon 1 of 4) protein_coding-exon (ENSMUSG00000103567.1, exon 1 of 4) 326 ENSMUSG00000103567.1 ENSMUSG00000103567 ENSMUST00000193414 Pcdhga5 protein_coding Interval_2477 chr1 39649772 39651302 + 0 NA exon (ENSMUSG00000050967.5, exon 1 of 4) protein_coding-exon (ENSMUSG00000050967.5, exon 1 of 4) 361 ENSMUSG00000097083.1 ENSMUSG00000097083 ENSMUST00000181841 D930019O06Rik antisense Interval_42949 chr13 21855037 21856354 + 0 NA Intergenic Intergenic 20534 ENSMUSG00000080770.1 ENSMUSG00000080770 ENSMUST00000121002 Gm11278 processed_pseudogene Interval_151978 chr7 127921632 127921836 + 0 NA intron (ENSMUSG00000030801.10, intron 5 of 10) protein_coding-intron (ENSMUSG00000030801.10, intron 5 of 10) 1946 ENSMUSG00000030801.10 ENSMUSG00000030801 ENSMUST00000206364 Kat8 protein_coding Interval_54787 chr14 75051252 75051517 + 0 NA intron (ENSMUSG00000034959.8, intron 8 of 8) protein_coding-intron (ENSMUSG00000034959.8, intron 13 of 13) 14762 ENSMUSG00000034959.8 ENSMUSG00000034959 ENSMUST00000228689 Rubcnl protein_coding Interval_142304 chr6 140546184 140548431 + 0 NA intron (ENSMUSG00000030231.11, intron 3 of 18) protein_coding-intron (ENSMUSG00000030231.11, intron 11 of 30) -16261 ENSMUSG00000030231.11 ENSMUSG00000030231 ENSMUST00000204528 Plekha5 protein_coding Interval_125326 chr5 66209676 66210032 + 0 NA Intergenic Intergenic -4893 ENSMUSG00000107125.1 ENSMUSG00000107125 ENSMUST00000201941 Gm3822 TEC Interval_117136 chr4 119917642 119917933 + 0 NA intron (ENSMUSG00000028634.17, intron 1 of 1) protein_coding-intron (ENSMUSG00000028634.17, intron 1 of 8) -114979 ENSMUSG00000028634.17 ENSMUSG00000028634 ENSMUST00000166542 Hivep3 protein_coding Interval_98753 chr2 154711820 154713513 + 0 NA TTS (ENSMUSG00000083975.1) processed_pseudogene-TTS (ENSMUSG00000083975.1) 1056 ENSMUSG00000083975.1 ENSMUSG00000083975 ENSMUST00000120578 Gm14215 processed_pseudogene Interval_27107 chr11 62949832 62950118 + 0 NA TTS (ENSMUSG00000087039.1) antisense-TTS (ENSMUSG00000087039.1) 1104 ENSMUSG00000087039.1 ENSMUSG00000087039 ENSMUST00000128675 Cdrt4os2 antisense Interval_138275 chr6 86801123 86801971 + 0 NA Intergenic Intergenic -7983 ENSMUSG00000029994.17 ENSMUSG00000029994 ENSMUST00000129772 Anxa4 protein_coding Interval_83704 chr19 3863131 3863337 + 0 NA TTS (ENSMUSG00000117912.1) antisense-TTS (ENSMUSG00000117912.1) 4439 ENSMUSG00000117912.1 ENSMUSG00000117912 ENSMUST00000235621 Gm50383 antisense Interval_61934 chr15 85335749 85337198 + 0 NA exon (ENSMUSG00000016541.10, exon 1 of 12) protein_coding-exon (ENSMUSG00000016541.10, exon 1 of 12) 228 ENSMUSG00000016541.10 ENSMUSG00000016541 ENSMUST00000163242 Atxn10 protein_coding Interval_112539 chr4 42978197 42979169 + 0 NA intron (ENSMUSG00000028451.12, intron 2 of 2) protein_coding-intron (ENSMUSG00000028451.12, intron 2 of 2) 7138 ENSMUSG00000028452.7 ENSMUSG00000028452 ENSMUST00000148182 Vcp protein_coding Interval_76822 chr17 84313016 84313858 + 0 NA intron (ENSMUSG00000024251.10, intron 13 of 14) protein_coding-intron (ENSMUSG00000024251.10, intron 28 of 37) 242 ENSMUSG00000024251.10 ENSMUSG00000024251 ENSMUST00000234313 Thada protein_coding Interval_90178 chr2 28759337 28759973 + 0 NA intron (ENSMUSG00000026807.8, intron 2 of 2) protein_coding-intron (ENSMUSG00000026807.8, intron 10 of 12) 17405 ENSMUSG00000026807.8 ENSMUSG00000026807 ENSMUST00000137588 Ak8 protein_coding Interval_153605 chr8 3676098 3677102 + 0 NA promoter-TSS (ENSMUSG00000040236.4) protein_coding-promoter-TSS (ENSMUSG00000040236.4) 90 ENSMUSG00000040236.4 ENSMUSG00000040236 ENSMUST00000207787 Trappc5 protein_coding Interval_48178 chr13 97013799 97014115 + 0 NA TTS (ENSMUSG00000113934.1) processed_pseudogene-TTS (ENSMUSG00000113934.1) 1342 ENSMUSG00000113934.1 ENSMUSG00000113934 ENSMUST00000222278 Gm48609 processed_pseudogene Interval_173829 chrX 105793826 105795761 + 0 NA Intergenic Intergenic -25090 ENSMUSG00000084678.1 ENSMUSG00000084678 ENSMUST00000122729 Gm26020 snRNA Interval_53581 chr14 59559475 59560198 + 0 NA TTS (ENSMUSG00000021982.14) protein_coding-TTS (ENSMUSG00000021982.14) 38103 ENSMUSG00000021982.14 ENSMUSG00000021982 ENSMUST00000223842 Cdadc1 protein_coding Interval_16479 chr10 63088886 63090908 + 0 NA Intergenic Intergenic -8452 ENSMUSG00000104481.1 ENSMUSG00000104481 ENSMUST00000193990 Gm38063 TEC Interval_1551 chr1 25461187 25462324 + 0 NA intron (ENSMUSG00000033569.17, intron 10 of 30) protein_coding-intron (ENSMUSG00000033569.17, intron 9 of 29) 10684 ENSMUSG00000084740.1 ENSMUSG00000084740 ENSMUST00000122791 Gm25294 snRNA Interval_106939 chr3 102062356 102063798 + 0 NA Intergenic Intergenic -4973 ENSMUSG00000104930.1 ENSMUSG00000104930 ENSMUST00000199964 Gm43243 processed_pseudogene Interval_8392 chr1 138783706 138784104 + 0 NA Intergenic Intergenic 58549 ENSMUSG00000019230.14 ENSMUSG00000019230 ENSMUST00000194557 Lhx9 protein_coding Interval_21729 chr11 3992028 3993056 + 0 NA intron (ENSMUSG00000049721.14, intron 1 of 2) protein_coding-intron (ENSMUSG00000049721.14, intron 2 of 3) 2609 ENSMUSG00000049721.14 ENSMUSG00000049721 ENSMUST00000109981 Gal3st1 protein_coding Interval_75512 chr17 67680584 67681427 + 0 NA Intergenic Intergenic -16260 ENSMUSG00000032796.8 ENSMUSG00000032796 ENSMUST00000233224 Lama1 protein_coding Interval_45889 chr13 58836557 58837547 + 0 NA exon (ENSMUSG00000055254.15, exon 1 of 2) protein_coding-exon (ENSMUSG00000055254.15, exon 1 of 2) 1237 ENSMUSG00000055254.15 ENSMUSG00000055254 ENSMUST00000223636 Ntrk2 protein_coding Interval_74878 chr17 57031022 57032421 + 0 NA promoter-TSS (ENSMUSG00000007670.10) protein_coding-promoter-TSS (ENSMUSG00000007670.10) -199 ENSMUSG00000007670.10 ENSMUSG00000007670 ENSMUST00000232765 Khsrp protein_coding Interval_157705 chr8 72409693 72410447 + 0 NA intron (ENSMUSG00000006276.10, intron 1 of 21) protein_coding-intron (ENSMUSG00000006276.10, intron 1 of 23) 11368 ENSMUSG00000006276.10 ENSMUSG00000006276 ENSMUST00000211977 Eps15l1 protein_coding Interval_59591 chr15 55683519 55685663 + 0 NA intron (ENSMUSG00000060429.12, intron 3 of 6) protein_coding-intron (ENSMUSG00000060429.12, intron 3 of 6) 67004 ENSMUSG00000022369.13 ENSMUSG00000022369 ENSMUST00000166449 Mtbp protein_coding Interval_55930 chr14 102860949 102861221 + 0 NA Intergenic Intergenic -26327 ENSMUSG00000115816.1 ENSMUSG00000115816 ENSMUST00000227101 Gm34589 processed_transcript Interval_57720 chr15 16670298 16670553 + 0 NA Intergenic Intergenic -58331 ENSMUSG00000025370.7 ENSMUSG00000025370 ENSMUST00000026432 Cdh9 protein_coding Interval_152886 chr7 139484335 139484803 + 0 NA intron (ENSMUSG00000025477.14, intron 3 of 3) protein_coding-intron (ENSMUSG00000025477.14, intron 4 of 15) -32090 ENSMUSG00000025477.14 ENSMUSG00000025477 ENSMUST00000152475 Inpp5a protein_coding Interval_167215 chr9 66246035 66246680 + 0 NA intron (ENSMUSG00000032380.9, intron 3 of 9) protein_coding-intron (ENSMUSG00000032380.9, intron 4 of 11) 88131 ENSMUSG00000032380.9 ENSMUSG00000032380 ENSMUST00000129778 Dapk2 protein_coding Interval_17325 chr10 75881770 75883459 + 0 NA Intergenic Intergenic 7183 ENSMUSG00000112306.1 ENSMUSG00000112306 ENSMUST00000220036 Gm47744 processed_pseudogene Interval_33962 chr11 119686068 119686716 + 0 NA intron (ENSMUSG00000025583.15, intron 3 of 32) protein_coding-intron (ENSMUSG00000025583.15, intron 3 of 33) -39762 ENSMUSG00000083870.1 ENSMUSG00000083870 ENSMUST00000121392 Gm11761 processed_pseudogene Interval_67744 chr16 56771074 56772097 + 0 NA intron (ENSMUSG00000022755.4, intron 4 of 15) protein_coding-intron (ENSMUSG00000022755.4, intron 4 of 15) 13320 ENSMUSG00000082485.1 ENSMUSG00000082485 ENSMUST00000120470 Gm15693 processed_pseudogene Interval_84483 chr19 11770046 11771144 + 0 NA intron (ENSMUSG00000024683.6, intron 1 of 2) protein_coding-intron (ENSMUSG00000024683.6, intron 1 of 3) 183 ENSMUSG00000024683.6 ENSMUSG00000024683 ENSMUST00000237728 Mrpl16 protein_coding Interval_51633 chr14 30943621 30944484 + 0 NA promoter-TSS (ENSMUSG00000006529.16) protein_coding-promoter-TSS (ENSMUSG00000006529.16) -766 ENSMUSG00000006529.16 ENSMUSG00000006529 ENSMUST00000227938 Itih1 protein_coding Interval_33697 chr11 117962317 117964118 + 0 NA Intergenic Intergenic 6234 ENSMUSG00000053113.3 ENSMUSG00000053113 ENSMUST00000132295 Socs3 protein_coding Interval_28166 chr11 73374815 73375667 + 0 NA exon (ENSMUSG00000063881.11, exon 3 of 3) protein_coding-exon (ENSMUSG00000063881.11, exon 3 of 3) 3995 ENSMUSG00000063881.11 ENSMUSG00000063881 ENSMUST00000170592 Olfr376 protein_coding Interval_106927 chr3 101995927 101996198 + 0 NA Intergenic Intergenic -14093 ENSMUSG00000048540.8 ENSMUSG00000048540 ENSMUST00000198675 Nhlh2 protein_coding Interval_73279 chr17 35945558 35945870 + 0 NA Intergenic Intergenic -1532 ENSMUSG00000092284.1 ENSMUSG00000092284 ENSMUST00000173255 Gm8801 unprocessed_pseudogene Interval_118684 chr4 133183788 133184842 + 0 NA intron (ENSMUSG00000028868.13, intron 2 of 2) protein_coding-intron (ENSMUSG00000028868.13, intron 2 of 8) -11340 ENSMUSG00000099202.1 ENSMUSG00000099202 ENSMUST00000184894 Mir7017 miRNA Interval_38340 chr12 77526695 77527141 + 0 NA promoter-TSS (ENSMUSG00000111939.1) processed_pseudogene-promoter-TSS (ENSMUSG00000111939.1) -520 ENSMUSG00000111939.1 ENSMUSG00000111939 ENSMUST00000219567 Gm48177 processed_pseudogene Interval_167657 chr9 71617419 71617876 + 0 NA Intergenic Intergenic 13462 ENSMUSG00000032232.14 ENSMUSG00000032232 ENSMUST00000146567 Cgnl1 protein_coding Interval_45354 chr13 54631344 54631688 + 0 NA intron (ENSMUSG00000025873.16, intron 2 of 5) protein_coding-intron (ENSMUSG00000025873.16, intron 1 of 10) 9715 ENSMUSG00000025873.16 ENSMUSG00000025873 ENSMUST00000141915 Faf2 protein_coding Interval_121591 chr5 3688744 3689542 + 0 NA TTS (ENSMUSG00000040351.11) protein_coding-TTS (ENSMUSG00000040351.11) -6821 ENSMUSG00000092698.1 ENSMUSG00000092698 ENSMUST00000174957 Gm22926 miRNA Interval_53696 chr14 60957396 60958573 + 0 NA Intergenic Intergenic 79907 ENSMUSG00000060548.13 ENSMUSG00000060548 ENSMUST00000225730 Tnfrsf19 protein_coding Interval_90376 chr2 30065956 30067543 + 0 NA promoter-TSS (ENSMUSG00000054766.13) protein_coding-promoter-TSS (ENSMUSG00000054766.13) 4995 ENSMUSG00000054766.13 ENSMUSG00000054766 ENSMUST00000147590 Set protein_coding Interval_21951 chr11 5398101 5398755 + 0 NA intron (ENSMUSG00000041961.14, intron 1 of 3) protein_coding-intron (ENSMUSG00000041961.14, intron 1 of 8) -16688 ENSMUSG00000041961.14 ENSMUSG00000041961 ENSMUST00000143746 Znrf3 protein_coding Interval_100806 chr2 172627449 172627698 + 0 NA Intergenic Intergenic 76582 ENSMUSG00000028640.11 ENSMUSG00000028640 ENSMUST00000142633 Tfap2c protein_coding Interval_71110 chr17 18372567 18372763 + 0 NA Intergenic Intergenic -51413 ENSMUSG00000091631.2 ENSMUSG00000091631 ENSMUST00000232090 Vmn2r95 protein_coding Interval_173791 chrX 104255035 104255716 + 0 NA Intergenic Intergenic -54190 ENSMUSG00000046449.15 ENSMUSG00000046449 ENSMUST00000056502 Nexmif protein_coding Interval_89317 chr2 19278247 19278647 + 0 NA intron (ENSMUSG00000037683.14, intron 10 of 19) protein_coding-intron (ENSMUSG00000037683.14, intron 10 of 18) -66391 ENSMUSG00000087674.7 ENSMUSG00000087674 ENSMUST00000136456 4930447M23Rik lincRNA Interval_49408 chr13 111773760 111774027 + 0 NA intron (ENSMUSG00000021754.17, intron 2 of 5) protein_coding-intron (ENSMUSG00000021754.17, intron 2 of 19) -22520 ENSMUSG00000021754.17 ENSMUSG00000021754 ENSMUST00000145055 Map3k1 protein_coding Interval_59529 chr15 55063967 55064192 + 0 NA intron (ENSMUSG00000037343.8, intron 4 of 15) protein_coding-intron (ENSMUSG00000037343.8, intron 4 of 25) -20482 ENSMUSG00000115657.1 ENSMUSG00000115657 ENSMUST00000228250 Gm41325 antisense Interval_141835 chr6 134826115 134826366 + 0 NA Intergenic Intergenic -9604 ENSMUSG00000108233.1 ENSMUSG00000108233 ENSMUST00000203947 Gm44084 processed_pseudogene Interval_81849 chr18 65280405 65280828 + 0 NA intron (ENSMUSG00000032845.16, intron 8 of 9) protein_coding-intron (ENSMUSG00000032845.16, intron 11 of 12) 23840 ENSMUSG00000032845.16 ENSMUSG00000032845 ENSMUST00000182629 Alpk2 protein_coding Interval_96814 chr2 128544564 128545252 + 0 NA Intergenic Intergenic 13326 ENSMUSG00000082671.2 ENSMUSG00000082671 ENSMUST00000122132 Gm14006 processed_pseudogene Interval_60065 chr15 64370911 64371105 + 0 NA intron (ENSMUSG00000022377.16, intron 1 of 30) protein_coding-intron (ENSMUSG00000022377.16, intron 1 of 30) -25371 ENSMUSG00000115169.1 ENSMUSG00000115169 ENSMUST00000226656 Gm30563 lincRNA Interval_86511 chr19 41290928 41291948 + 0 NA intron (ENSMUSG00000025017.10, intron 13 of 16) protein_coding-intron (ENSMUSG00000025017.10, intron 13 of 16) -27458 ENSMUSG00000025016.11 ENSMUSG00000025016 ENSMUST00000237871 Tm9sf3 protein_coding Interval_83018 chr18 80440921 80441187 + 0 NA promoter-TSS (ENSMUSG00000033323.14) protein_coding-promoter-TSS (ENSMUSG00000033323.14) -195 ENSMUSG00000033323.14 ENSMUSG00000033323 ENSMUST00000161003 Ctdp1 protein_coding Interval_111659 chr4 25408672 25408988 + 0 NA Intergenic Intergenic -10519 ENSMUSG00000082451.1 ENSMUSG00000082451 ENSMUST00000121579 Gm11894 processed_pseudogene Interval_41719 chr12 118276059 118276256 + 0 NA intron (ENSMUSG00000025323.10, intron 1 of 1) protein_coding-intron (ENSMUSG00000025323.10, intron 3 of 5) 25211 ENSMUSG00000025323.10 ENSMUSG00000025323 ENSMUST00000221844 Sp4 protein_coding Interval_121825 chr5 8541945 8542180 + 0 NA intron (ENSMUSG00000040570.14, intron 6 of 10) protein_coding-intron (ENSMUSG00000040570.14, intron 6 of 9) -27210 ENSMUSG00000105740.1 ENSMUSG00000105740 ENSMUST00000200378 Gm42685 TEC Interval_60379 chr15 73343766 73344084 + 0 NA promoter-TSS (ENSMUSG00000022607.18) protein_coding-promoter-TSS (ENSMUSG00000022607.18) -5874 ENSMUSG00000088005.1 ENSMUSG00000088005 ENSMUST00000157380 Gm24787 snoRNA Interval_83900 chr19 5456475 5457903 + 0 NA exon (ENSMUSG00000095098.2, exon 1 of 1) protein_coding-exon (ENSMUSG00000095098.2, exon 1 of 1) 315 ENSMUSG00000095098.2 ENSMUSG00000095098 ENSMUST00000236881 Ccdc85b protein_coding Interval_130305 chr5 125523369 125523918 + 0 NA Intergenic Intergenic -8131 ENSMUSG00000070498.3 ENSMUSG00000070498 ENSMUST00000184422 Tmem132b protein_coding Interval_21942 chr11 5341933 5342218 + 0 NA intron (ENSMUSG00000041961.14, intron 1 of 3) protein_coding-intron (ENSMUSG00000041961.14, intron 1 of 8) 39665 ENSMUSG00000041961.14 ENSMUSG00000041961 ENSMUST00000143746 Znrf3 protein_coding Interval_50035 chr13 119874273 119874733 + 0 NA Intergenic Intergenic -1428 ENSMUSG00000103877.2 ENSMUSG00000103877 ENSMUST00000191645 Gm21358 processed_pseudogene Interval_28194 chr11 74137799 74138208 + 0 NA Intergenic Intergenic -15526 ENSMUSG00000070379.5 ENSMUSG00000070379 ENSMUST00000073675 Olfr402 protein_coding Interval_65702 chr16 25635733 25636020 + 0 NA Intergenic Intergenic -47889 ENSMUSG00000022510.14 ENSMUSG00000022510 ENSMUST00000115306 Trp63 protein_coding Interval_36931 chr12 55438550 55439019 + 0 NA Intergenic Intergenic -42555 ENSMUSG00000059033.7 ENSMUSG00000059033 ENSMUST00000161190 Rpl18a-ps1 processed_pseudogene Interval_65509 chr16 22917714 22920702 + 0 NA intron (ENSMUSG00000022871.13, intron 1 of 6) protein_coding-intron (ENSMUSG00000022871.13, intron 1 of 7) -1108 ENSMUSG00000022871.13 ENSMUSG00000022871 ENSMUST00000167399 Fetub protein_coding Interval_42328 chr13 12148347 12148827 + 0 NA Intergenic Intergenic -12167 ENSMUSG00000113347.1 ENSMUSG00000113347 ENSMUST00000220496 Gm47323 processed_pseudogene Interval_169817 chr9 102143504 102143679 + 0 NA intron (ENSMUSG00000032537.15, intron 3 of 4) protein_coding-intron (ENSMUSG00000032537.15, intron 3 of 15) 10126 ENSMUSG00000101648.1 ENSMUSG00000101648 ENSMUST00000190718 Gm29388 sense_intronic Interval_2992 chr1 51930959 51932012 + 0 NA Intergenic Intergenic 7180 ENSMUSG00000100696.1 ENSMUSG00000100696 ENSMUST00000189886 Gm8419 processed_pseudogene Interval_113053 chr4 47245428 47245754 + 0 NA TTS (ENSMUSG00000028339.17) protein_coding-TTS (ENSMUSG00000028339.17) -12944 ENSMUSG00000028339.17 ENSMUSG00000028339 ENSMUST00000107730 Col15a1 protein_coding Interval_132612 chr5 146736287 146737213 + 0 NA exon (ENSMUSG00000029640.17, exon 9 of 9) protein_coding-exon (ENSMUSG00000029640.17, exon 9 of 9) 21698 ENSMUSG00000029640.17 ENSMUSG00000029640 ENSMUST00000124009 Usp12 protein_coding Interval_35566 chr12 24865839 24866987 + 0 NA intron (ENSMUSG00000020646.17, intron 1 of 9) protein_coding-intron (ENSMUSG00000020646.17, intron 1 of 9) 34782 ENSMUSG00000020646.17 ENSMUSG00000020646 ENSMUST00000222994 Mboat2 protein_coding Interval_34494 chr12 4610412 4610808 + 0 NA intron (ENSMUSG00000111971.1, intron 1 of 1) protein_coding-intron (ENSMUSG00000020640.10, intron 1 of 38) -17581 ENSMUSG00000118449.1 ENSMUSG00000118449 ENSMUST00000170816 AC241534.1 bidirectional_promoter_lncRNA Interval_5031 chr1 84423438 84423749 + 0 NA intron (ENSMUSG00000036766.12, intron 8 of 12) protein_coding-intron (ENSMUSG00000036766.12, intron 8 of 12) -28194 ENSMUSG00000104396.1 ENSMUSG00000104396 ENSMUST00000191700 Gm37959 TEC Interval_159605 chr8 95765381 95765860 + 0 NA intron (ENSMUSG00000036550.16, intron 1 of 1) protein_coding-intron (ENSMUSG00000036550.16, intron 10 of 47) -8536 ENSMUSG00000065211.3 ENSMUSG00000065211 ENSMUST00000083277 Gm26265 snoRNA Interval_174394 chrX 151123418 151124968 + 0 NA Intergenic Intergenic -27670 ENSMUSG00000025264.12 ENSMUSG00000025264 ENSMUST00000166689 Tsr2 protein_coding Interval_25644 chr11 50376749 50378726 + 0 NA promoter-TSS (ENSMUSG00000007850.16) protein_coding-promoter-TSS (ENSMUSG00000007850.16) -5442 ENSMUSG00000007850.16 ENSMUSG00000007850 ENSMUST00000151537 Hnrnph1 protein_coding Interval_141758 chr6 134255957 134256936 + 0 NA intron (ENSMUSG00000030199.16, intron 2 of 2) protein_coding-intron (ENSMUSG00000030199.16, intron 5 of 7) -10080 ENSMUSG00000108263.1 ENSMUSG00000108263 ENSMUST00000204426 1700051K13Rik TEC Interval_107715 chr3 111786679 111786912 + 0 NA Intergenic Intergenic -2697 ENSMUSG00000105882.1 ENSMUSG00000105882 ENSMUST00000196237 Gm42905 TEC Interval_105193 chr3 83732774 83733051 + 0 NA Intergenic Intergenic 30660 ENSMUSG00000088597.1 ENSMUSG00000088597 ENSMUST00000157972 Gm24584 snRNA Interval_82714 chr18 76144390 76146259 + 0 NA intron (ENSMUSG00000044646.15, intron 4 of 5) protein_coding-intron (ENSMUSG00000044646.15, intron 4 of 4) -25228 ENSMUSG00000098276.1 ENSMUSG00000098276 ENSMUST00000184549 Mir6358 miRNA Interval_66575 chr16 35244247 35244576 + 0 NA intron (ENSMUSG00000022840.9, intron 1 of 20) protein_coding-intron (ENSMUSG00000022840.9, intron 1 of 20) -9488 ENSMUSG00000084581.1 ENSMUSG00000084581 ENSMUST00000122632 Gm25179 snRNA Interval_128755 chr5 115100356 115100613 + 0 NA Intergenic Intergenic -2189 ENSMUSG00000072693.2 ENSMUSG00000072693 ENSMUST00000100848 Gm10401 protein_coding Interval_88007 chr19 57768241 57768861 + 0 NA intron (ENSMUSG00000054843.9, intron 24 of 28) protein_coding-intron (ENSMUSG00000054843.9, intron 24 of 28) 157517 ENSMUSG00000054843.9 ENSMUSG00000054843 ENSMUST00000077282 Atrnl1 protein_coding Interval_13057 chr10 10733317 10733543 + 0 NA intron (ENSMUSG00000019828.13, intron 6 of 9) protein_coding-intron (ENSMUSG00000019828.13, intron 6 of 8) 2801 ENSMUSG00000112772.1 ENSMUSG00000112772 ENSMUST00000220033 Gm48400 processed_pseudogene Interval_128028 chr5 110357640 110358018 + 0 NA Intergenic Intergenic 3671 ENSMUSG00000072754.9 ENSMUSG00000072754 ENSMUST00000190963 Lrcol1 protein_coding Interval_111417 chr4 21408003 21408966 + 0 NA Intergenic Intergenic 79964 ENSMUSG00000089322.1 ENSMUSG00000089322 ENSMUST00000158697 Gm25977 snoRNA Interval_166900 chr9 63809887 63810797 + 0 NA Intergenic Intergenic -8545 ENSMUSG00000111137.1 ENSMUSG00000111137 ENSMUST00000215986 Gm2553 processed_pseudogene Interval_44118 chr13 41000168 41001699 + 0 NA promoter-TSS (ENSMUSG00000038683.16) protein_coding-promoter-TSS (ENSMUSG00000038683.16) 218 ENSMUSG00000086693.1 ENSMUSG00000086693 ENSMUST00000153685 A730081D07Rik antisense Interval_3280 chr1 55485619 55487649 + 0 NA intron (ENSMUSG00000038349.10, intron 1 of 5) protein_coding-intron (ENSMUSG00000038349.10, intron 1 of 5) -41610 ENSMUSG00000100309.1 ENSMUSG00000100309 ENSMUST00000186507 Gm6644 processed_pseudogene Interval_163260 chr9 20234825 20235117 + 0 NA Intergenic Intergenic -2148 ENSMUSG00000066897.8 ENSMUSG00000066897 ENSMUST00000086474 Olfr872 protein_coding Interval_56911 chr14 123161164 123161578 + 0 NA intron (ENSMUSG00000115016.1, intron 1 of 3) processed_transcript-intron (ENSMUSG00000115016.1, intron 1 of 3) 4114 ENSMUSG00000115758.1 ENSMUSG00000115758 ENSMUST00000226283 Gm49294 processed_pseudogene Interval_127223 chr5 101597157 101597553 + 0 NA Intergenic Intergenic -1959 ENSMUSG00000092503.1 ENSMUSG00000092503 ENSMUST00000173738 Gm20484 lincRNA Interval_43901 chr13 37958861 37959654 + 0 NA Intergenic Intergenic 12241 ENSMUSG00000039087.17 ENSMUSG00000039087 ENSMUST00000162849 Rreb1 protein_coding Interval_13667 chr10 20833016 20833614 + 0 NA Intergenic Intergenic 45658 ENSMUSG00000111177.1 ENSMUSG00000111177 ENSMUST00000213102 Rps2-ps3 processed_pseudogene Interval_44461 chr13 44968763 44969239 + 0 NA intron (ENSMUSG00000057531.14, intron 1 of 3) protein_coding-intron (ENSMUSG00000057531.14, intron 6 of 9) 33051 ENSMUSG00000057531.14 ENSMUSG00000057531 ENSMUST00000223524 Dtnbp1 protein_coding Interval_131098 chr5 135103840 135104232 + 0 NA intron (ENSMUSG00000005373.13, intron 1 of 3) protein_coding-intron (ENSMUSG00000005373.13, intron 1 of 3) 14146 ENSMUSG00000005373.13 ENSMUSG00000005373 ENSMUST00000123370 Mlxipl protein_coding Interval_149645 chr7 100325292 100326065 + 0 NA Intergenic Intergenic 24097 ENSMUSG00000051048.17 ENSMUSG00000051048 ENSMUST00000208565 P4ha3 protein_coding Interval_165069 chr9 44275509 44275717 + 0 NA intron (ENSMUSG00000032131.16, intron 5 of 6) protein_coding-intron (ENSMUSG00000032131.16, intron 11 of 13) 3987 ENSMUSG00000032131.16 ENSMUSG00000032131 ENSMUST00000160384 Abcg4 protein_coding Interval_139133 chr6 95708936 95709937 + 0 NA intron (ENSMUSG00000061838.7, intron 1 of 10) protein_coding-intron (ENSMUSG00000061838.7, intron 1 of 1) -51968 ENSMUSG00000061838.7 ENSMUSG00000061838 ENSMUST00000203109 Suclg2 protein_coding Interval_101445 chr2 181471047 181471328 + 0 NA Intergenic Intergenic -22019 ENSMUSG00000055882.8 ENSMUSG00000055882 ENSMUST00000069649 Abhd16b protein_coding Interval_106431 chr3 96171055 96173173 + 0 NA promoter-TSS (ENSMUSG00000068856.3) protein_coding-promoter-TSS (ENSMUSG00000068856.3) 302 ENSMUSG00000097204.2 ENSMUSG00000097204 ENSMUST00000199721 Gm17690 antisense Interval_56523 chr14 119857510 119857745 + 0 NA intron (ENSMUSG00000053465.6, intron 1 of 1) protein_coding-intron (ENSMUSG00000053465.6, intron 1 of 1) 58649 ENSMUSG00000115639.1 ENSMUSG00000115639 ENSMUST00000228885 4930404K13Rik sense_intronic Interval_34593 chr12 6381369 6381628 + 0 NA Intergenic Intergenic -99162 ENSMUSG00000112591.1 ENSMUSG00000112591 ENSMUST00000219548 Gm4927 processed_pseudogene Interval_25611 chr11 50199870 50201004 + 0 NA TTS (ENSMUSG00000020381.10) protein_coding-TTS (ENSMUSG00000020381.10) 6882 ENSMUSG00000015837.15 ENSMUSG00000015837 ENSMUST00000154805 Sqstm1 protein_coding Interval_158353 chr8 82641933 82642145 + 0 NA Intergenic Intergenic 64272 ENSMUSG00000097984.1 ENSMUSG00000097984 ENSMUST00000183320 Gm8167 processed_pseudogene Interval_166306 chr9 58218115 58218898 + 0 NA TTS (ENSMUSG00000036986.16) protein_coding-TTS (ENSMUSG00000036986.16) -2644 ENSMUSG00000098886.1 ENSMUSG00000098886 ENSMUST00000184295 Mir6385 miRNA Interval_147909 chr7 75442529 75442769 + 0 NA Intergenic Intergenic -21514 ENSMUSG00000108590.1 ENSMUSG00000108590 ENSMUST00000206460 Gm44962 processed_pseudogene Interval_107677 chr3 110141723 110144855 + 0 NA promoter-TSS (ENSMUSG00000059857.15) protein_coding-promoter-TSS (ENSMUSG00000059857.15) 101339 ENSMUSG00000105639.1 ENSMUSG00000105639 ENSMUST00000198691 Gm42516 TEC Interval_514 chr1 6845722 6845998 + 0 NA intron (ENSMUSG00000033740.17, intron 18 of 21) protein_coding-intron (ENSMUSG00000033740.17, intron 20 of 23) 18291 ENSMUSG00000103329.2 ENSMUSG00000103329 ENSMUST00000195780 Gm42492 TEC Interval_77836 chr18 4333494 4333902 + 0 NA TTS (ENSMUSG00000024235.11) protein_coding-TTS (ENSMUSG00000024235.11) 19259 ENSMUSG00000024235.11 ENSMUSG00000024235 ENSMUST00000172805 Map3k8 protein_coding Interval_172778 chrX 48607782 48609348 + 0 NA Intergenic Intergenic -14061 ENSMUSG00000036916.13 ENSMUSG00000036916 ENSMUST00000150501 Zfp280c protein_coding Interval_72896 chr17 33015589 33016309 + 0 NA TTS (ENSMUSG00000067430.7) protein_coding-TTS (ENSMUSG00000067430.7) 17219 ENSMUSG00000067430.7 ENSMUSG00000067430 ENSMUST00000124465 Zfp763 protein_coding Interval_144395 chr7 24897222 24897844 + 0 NA exon (ENSMUSG00000003379.7, exon 1 of 5) protein_coding-exon (ENSMUSG00000003379.7, exon 1 of 5) 152 ENSMUSG00000003379.7 ENSMUSG00000003379 ENSMUST00000003469 Cd79a protein_coding Interval_167488 chr9 69936839 69937333 + 0 NA Intergenic Intergenic 52882 ENSMUSG00000101555.1 ENSMUSG00000101555 ENSMUST00000185564 Gm28731 antisense Interval_93702 chr2 75988089 75988352 + 0 NA TTS (ENSMUSG00000075270.11) protein_coding-TTS (ENSMUSG00000075270.11) -6253 ENSMUSG00000075271.4 ENSMUSG00000075271 ENSMUST00000099994 Ttc30a1 protein_coding Interval_60572 chr15 75190766 75191137 + 0 NA Intergenic Intergenic 6716 ENSMUSG00000101140.1 ENSMUSG00000101140 ENSMUST00000188472 Gm28117 unprocessed_pseudogene Interval_134755 chr6 31227079 31228333 + 0 NA intron (ENSMUSG00000087380.7, intron 1 of 4) processed_transcript-intron (ENSMUSG00000087380.7, intron 1 of 6) -11340 ENSMUSG00000044471.12 ENSMUSG00000044471 ENSMUST00000229779 Lncpint lincRNA Interval_139441 chr6 100206290 100207629 + 0 NA Intergenic Intergenic -41173 ENSMUSG00000108269.1 ENSMUSG00000108269 ENSMUST00000203798 Gm18422 transcribed_processed_pseudogene Interval_64511 chr16 12930892 12932527 + 0 NA intron (ENSMUSG00000116520.1, intron 1 of 11) lincRNA-intron (ENSMUSG00000116520.1, intron 1 of 11) 14226 ENSMUSG00000116520.1 ENSMUSG00000116520 ENSMUST00000230696 4930414F18Rik lincRNA Interval_76717 chr17 83666370 83668808 + 0 NA Intergenic Intergenic -35694 ENSMUSG00000045053.2 ENSMUSG00000045053 ENSMUST00000051482 Kcng3 protein_coding Interval_594 chr1 8468525 8468952 + 0 NA promoter-TSS (ENSMUSG00000086235.1) processed_pseudogene-promoter-TSS (ENSMUSG00000086235.1) 87 ENSMUSG00000086235.1 ENSMUSG00000086235 ENSMUST00000140995 Gm16284 processed_pseudogene Interval_30922 chr11 97234531 97234804 + 0 NA TTS (ENSMUSG00000001441.13) protein_coding-TTS (ENSMUSG00000001441.13) -45461 ENSMUSG00000086680.2 ENSMUSG00000086680 ENSMUST00000133160 Gm11592 antisense Interval_134966 chr6 34187277 34188420 + 0 NA Intergenic Intergenic 8616 ENSMUSG00000087613.1 ENSMUSG00000087613 ENSMUST00000145644 Gm13855 lincRNA Interval_44187 chr13 41737429 41738445 + 0 NA Intergenic Intergenic -62846 ENSMUSG00000085759.1 ENSMUSG00000085759 ENSMUST00000154159 1700061E18Rik antisense Interval_162413 chr8 128357242 128360215 + 0 NA promoter-TSS (ENSMUSG00000025810.9) protein_coding-promoter-TSS (ENSMUSG00000025810.9) -513 ENSMUSG00000084523.1 ENSMUSG00000084523 ENSMUST00000122574 Mir1903 miRNA Interval_125903 chr5 75587201 75588009 + 0 NA intron (ENSMUSG00000005672.12, intron 1 of 20) protein_coding-intron (ENSMUSG00000005672.12, intron 1 of 20) -26455 ENSMUSG00000089078.1 ENSMUSG00000089078 ENSMUST00000158453 Gm24502 snRNA Interval_162978 chr9 14053618 14054209 + 0 NA Intergenic Intergenic -35707 ENSMUSG00000111489.1 ENSMUSG00000111489 ENSMUST00000214881 1700019J19Rik lincRNA Interval_15091 chr10 42509930 42510831 + 0 NA intron (ENSMUSG00000019804.12, intron 1 of 2) protein_coding-intron (ENSMUSG00000019804.12, intron 1 of 3) 8350 ENSMUSG00000019804.12 ENSMUSG00000019804 ENSMUST00000105499 Snx3 protein_coding Interval_123196 chr5 30548592 30548887 + 0 NA Intergenic Intergenic -2903 ENSMUSG00000053194.2 ENSMUSG00000053194 ENSMUST00000065486 Cib4 protein_coding Interval_54797 chr14 75187678 75188892 + 0 NA intron (ENSMUSG00000021998.16, intron 2 of 2) protein_coding-intron (ENSMUSG00000021998.16, intron 3 of 5) 10986 ENSMUSG00000090054.1 ENSMUSG00000090054 ENSMUST00000161819 Gm15629 antisense Interval_76211 chr17 77300894 77301534 + 0 NA Intergenic Intergenic 61996 ENSMUSG00000117578.1 ENSMUSG00000117578 ENSMUST00000234215 Rpsa-ps8 processed_pseudogene Interval_127700 chr5 106790924 106791648 + 0 NA Intergenic Intergenic -52522 ENSMUSG00000106301.1 ENSMUSG00000106301 ENSMUST00000197334 Gm8365 processed_pseudogene Interval_43839 chr13 37508388 37509340 + 0 NA promoter-TSS (ENSMUSG00000100022.2) lincRNA-promoter-TSS (ENSMUSG00000100022.2) -854 ENSMUSG00000100022.2 ENSMUSG00000100022 ENSMUST00000224398 Gm29590 lincRNA Interval_96267 chr2 121088283 121088920 + 0 NA Intergenic Intergenic -2779 ENSMUSG00000053675.8 ENSMUSG00000053675 ENSMUST00000142674 Tgm5 protein_coding Interval_82171 chr18 68269586 68270097 + 0 NA intron (ENSMUSG00000038121.6, intron 3 of 3) protein_coding-intron (ENSMUSG00000038121.6, intron 3 of 3) -8868 ENSMUSG00000098253.1 ENSMUSG00000098253 ENSMUST00000184508 Mir7219 miRNA Interval_116050 chr4 107247314 107247498 + 0 NA TTS (ENSMUSG00000028617.10) protein_coding-TTS (ENSMUSG00000028617.10) 5754 ENSMUSG00000028617.10 ENSMUSG00000028617 ENSMUST00000156771 Lrrc42 protein_coding Interval_167302 chr9 67156666 67157125 + 0 NA intron (ENSMUSG00000111556.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000111556.1, intron 1 of 2) 23334 ENSMUSG00000111556.1 ENSMUSG00000111556 ENSMUST00000215724 Gm19299 lincRNA Interval_20020 chr10 112100596 112100853 + 0 NA TTS (ENSMUSG00000089667.1) processed_pseudogene-TTS (ENSMUSG00000089667.1) 824 ENSMUSG00000089667.1 ENSMUSG00000089667 ENSMUST00000161922 Gm15914 processed_pseudogene Interval_61841 chr15 84597044 84597564 + 0 NA Intergenic Intergenic -20187 ENSMUSG00000116409.1 ENSMUSG00000116409 ENSMUST00000229199 Gm34095 lincRNA Interval_37523 chr12 69557228 69557902 + 0 NA Intergenic Intergenic 3772 ENSMUSG00000095776.1 ENSMUSG00000095776 ENSMUST00000177928 Gm23018 miRNA Interval_87163 chr19 46538351 46539913 + 0 NA intron (ENSMUSG00000025035.9, intron 2 of 2) protein_coding-intron (ENSMUSG00000025035.9, intron 5 of 5) 19260 ENSMUSG00000025035.9 ENSMUSG00000025035 ENSMUST00000235489 Arl3 protein_coding Interval_155991 chr8 41540815 41541027 + 0 NA Intergenic Intergenic 68748 ENSMUSG00000098149.1 ENSMUSG00000098149 ENSMUST00000183246 Gapdh-ps14 processed_pseudogene Interval_18164 chr10 83130973 83131216 + 0 NA intron (ENSMUSG00000034612.7, intron 2 of 2) protein_coding-intron (ENSMUSG00000034612.7, intron 2 of 2) 10944 ENSMUSG00000090200.1 ENSMUSG00000090200 ENSMUST00000160997 1700025N21Rik antisense Interval_21926 chr11 5242244 5242546 + 0 NA intron (ENSMUSG00000020393.16, intron 2 of 8) protein_coding-intron (ENSMUSG00000020393.16, intron 2 of 8) -3947 ENSMUSG00000020393.16 ENSMUSG00000020393 ENSMUST00000151978 Kremen1 protein_coding Interval_97533 chr2 139369473 139370344 + 0 NA intron (ENSMUSG00000085071.1, intron 2 of 5) processed_transcript-intron (ENSMUSG00000085071.1, intron 2 of 5) 14432 ENSMUSG00000081799.1 ENSMUSG00000081799 ENSMUST00000117817 Gm14071 processed_pseudogene Interval_18819 chr10 91113906 91114107 + 0 NA Intergenic Intergenic 4530 ENSMUSG00000077167.1 ENSMUSG00000077167 ENSMUST00000103979 Gm24119 snoRNA Interval_67411 chr16 48414812 48415156 + 0 NA Intergenic Intergenic -2568 ENSMUSG00000110573.1 ENSMUSG00000110573 ENSMUST00000212197 Gm5485 protein_coding Interval_111451 chr4 21739078 21739781 + 0 NA TTS (ENSMUSG00000028252.20) protein_coding-TTS (ENSMUSG00000028252.20) 11671 ENSMUSG00000028252.20 ENSMUSG00000028252 ENSMUST00000133712 Ccnc protein_coding Interval_45001 chr13 51364860 51365788 + 0 NA Intergenic Intergenic 20328 ENSMUSG00000113162.1 ENSMUSG00000113162 ENSMUST00000222986 Gm47554 processed_pseudogene Interval_123629 chr5 33953877 33955021 + 0 NA Intergenic Intergenic -5459 ENSMUSG00000106688.1 ENSMUSG00000106688 ENSMUST00000201325 Gm42851 lincRNA Interval_158668 chr8 85036133 85038538 + 0 NA promoter-TSS (ENSMUSG00000031691.14) protein_coding-promoter-TSS (ENSMUSG00000031691.14) 167 ENSMUSG00000031691.14 ENSMUSG00000031691 ENSMUST00000210461 Tnpo2 protein_coding Interval_173036 chrX 66678729 66678972 + 0 NA Intergenic Intergenic 29532 ENSMUSG00000036790.5 ENSMUSG00000036790 ENSMUST00000036043 Slitrk2 protein_coding Interval_10583 chr1 172014838 172015419 + 0 NA intron (ENSMUSG00000026556.15, intron 1 of 8) protein_coding-intron (ENSMUSG00000026556.15, intron 1 of 7) 11583 ENSMUSG00000026556.15 ENSMUSG00000026556 ENSMUST00000138714 Vangl2 protein_coding Interval_58892 chr15 39767719 39768479 + 0 NA TTS (ENSMUSG00000022304.13) protein_coding-TTS (ENSMUSG00000022304.13) 22165 ENSMUSG00000022303.9 ENSMUSG00000022303 ENSMUST00000227792 Dcstamp protein_coding Interval_66782 chr16 37584232 37585678 + 0 NA intron (ENSMUSG00000022821.13, intron 1 of 4) protein_coding-intron (ENSMUSG00000022821.13, intron 1 of 12) 4673 ENSMUSG00000022821.13 ENSMUSG00000022821 ENSMUST00000159938 Hgd protein_coding Interval_29792 chr11 86827957 86828790 + 0 NA Intergenic Intergenic -27285 ENSMUSG00000018425.18 ENSMUSG00000018425 ENSMUST00000131798 Dhx40 protein_coding Interval_117262 chr4 121110205 121110680 + 0 NA Intergenic Intergenic -1216 ENSMUSG00000078577.3 ENSMUSG00000078577 ENSMUST00000106268 Tmco2 protein_coding Interval_133833 chr6 13043522 13043728 + 0 NA Intergenic Intergenic 12972 ENSMUSG00000098052.1 ENSMUSG00000098052 ENSMUST00000182201 Gm5300 processed_pseudogene Interval_17990 chr10 81266364 81267188 + 0 NA promoter-TSS (ENSMUSG00000004931.11) protein_coding-promoter-TSS (ENSMUSG00000004931.11) 148 ENSMUSG00000034932.4 ENSMUSG00000034932 ENSMUST00000145452 Mrpl54 protein_coding Interval_85039 chr19 21737510 21738744 + 0 NA Intergenic Intergenic 8857 ENSMUSG00000118055.1 ENSMUSG00000118055 ENSMUST00000235761 Gm50129 processed_pseudogene Interval_121660 chr5 4665349 4665545 + 0 NA Intergenic Intergenic 92588 ENSMUSG00000044674.6 ENSMUSG00000044674 ENSMUST00000054294 Fzd1 protein_coding Interval_51753 chr14 31963308 31964179 + 0 NA Intergenic Intergenic 49259 ENSMUSG00000115120.1 ENSMUSG00000115120 ENSMUST00000226278 4930425P05Rik lincRNA Interval_107040 chr3 103107575 103109387 + 0 NA intron (ENSMUSG00000007379.15, intron 1 of 17) protein_coding-intron (ENSMUSG00000007379.15, intron 1 of 11) 11735 ENSMUSG00000105731.1 ENSMUSG00000105731 ENSMUST00000198198 Gm43063 sense_intronic Interval_55587 chr14 93937162 93937386 + 0 NA Intergenic Intergenic -44868 ENSMUSG00000115797.1 ENSMUSG00000115797 ENSMUST00000227233 Gm48981 processed_pseudogene Interval_160674 chr8 111530458 111531858 + 0 NA Intergenic Intergenic -6420 ENSMUSG00000033545.14 ENSMUSG00000033545 ENSMUST00000173819 Znrf1 protein_coding Interval_89316 chr2 19275914 19277284 + 0 NA intron (ENSMUSG00000037683.14, intron 10 of 19) protein_coding-intron (ENSMUSG00000037683.14, intron 10 of 18) -68239 ENSMUSG00000087674.7 ENSMUSG00000087674 ENSMUST00000136456 4930447M23Rik lincRNA Interval_48213 chr13 97223765 97224139 + 0 NA Intergenic Intergenic -17153 ENSMUSG00000041773.8 ENSMUSG00000041773 ENSMUST00000041623 Enc1 protein_coding Interval_152258 chr7 130991262 130991905 + 0 NA intron (ENSMUSG00000030849.18, intron 2 of 6) protein_coding-intron (ENSMUSG00000030849.18, intron 2 of 6) -40470 ENSMUSG00000047517.12 ENSMUSG00000047517 ENSMUST00000209167 Dmbt1 protein_coding Interval_42591 chr13 16100205 16101018 + 0 NA Intergenic Intergenic 54970 ENSMUSG00000113715.1 ENSMUSG00000113715 ENSMUST00000221903 Gm6562 processed_pseudogene Interval_1460 chr1 23753174 23753623 + 0 NA Intergenic Intergenic -8355 ENSMUSG00000026156.8 ENSMUSG00000026156 ENSMUST00000140583 B3gat2 protein_coding Interval_64316 chr16 10435039 10435299 + 0 NA intron (ENSMUSG00000050908.12, intron 2 of 6) protein_coding-intron (ENSMUSG00000050908.12, intron 1 of 6) 12158 ENSMUSG00000050908.12 ENSMUSG00000050908 ENSMUST00000141587 Tvp23a protein_coding Interval_122833 chr5 25917500 25918356 + 0 NA Intergenic Intergenic 8362 ENSMUSG00000105052.4 ENSMUSG00000105052 ENSMUST00000167847 Gm21655 processed_transcript Interval_31762 chr11 102701661 102702980 + 0 NA Intergenic Intergenic -4586 ENSMUSG00000020925.16 ENSMUSG00000020925 ENSMUST00000138147 Ccdc43 protein_coding Interval_33574 chr11 117300734 117301222 + 0 NA intron (ENSMUSG00000059248.13, intron 2 of 10) protein_coding-intron (ENSMUSG00000059248.13, intron 2 of 10) -31450 ENSMUSG00000059248.13 ENSMUSG00000059248 ENSMUST00000129387 Septin9 protein_coding Interval_17022 chr10 70505928 70508271 + 0 NA intron (ENSMUSG00000043259.15, intron 6 of 10) protein_coding-intron (ENSMUSG00000043259.15, intron 5 of 13) -1851 ENSMUSG00000112273.1 ENSMUSG00000112273 ENSMUST00000219398 Gm29783 processed_pseudogene Interval_153846 chr8 9770205 9772216 + 0 NA promoter-TSS (ENSMUSG00000079157.4) protein_coding-promoter-TSS (ENSMUSG00000079157.4) -189 ENSMUSG00000079157.4 ENSMUSG00000079157 ENSMUST00000207869 Fam155a protein_coding Interval_46405 chr13 64824979 64825471 + 0 NA intron (ENSMUSG00000033063.8, intron 3 of 23) protein_coding-intron (ENSMUSG00000033063.8, intron 3 of 23) -66764 ENSMUSG00000033063.8 ENSMUSG00000033063 ENSMUST00000222618 Cntnap3 protein_coding Interval_161679 chr8 121971397 121971956 + 0 NA intron (ENSMUSG00000025316.16, intron 2 of 7) protein_coding-intron (ENSMUSG00000025316.16, intron 1 of 12) 2146 ENSMUSG00000091952.3 ENSMUSG00000091952 ENSMUST00000174536 Gm17709 processed_pseudogene Interval_31529 chr11 101190827 101191709 + 0 NA TTS (ENSMUSG00000017167.6) protein_coding-TTS (ENSMUSG00000017167.6) -15825 ENSMUSG00000044052.3 ENSMUSG00000044052 ENSMUST00000062759 Ccr10 protein_coding Interval_44923 chr13 49958237 49958503 + 0 NA Intergenic Intergenic -11631 ENSMUSG00000114175.1 ENSMUSG00000114175 ENSMUST00000222242 Gm48051 lincRNA Interval_159933 chr8 105264166 105265416 + 0 NA promoter-TSS (ENSMUSG00000031887.13) protein_coding-promoter-TSS (ENSMUSG00000031887.13) 109 ENSMUSG00000033313.11 ENSMUSG00000033313 ENSMUST00000126923 Fbxl8 protein_coding Interval_172336 chrX 13139522 13139939 + 0 NA intron (ENSMUSG00000031010.17, intron 26 of 44) protein_coding-intron (ENSMUSG00000031010.17, intron 26 of 44) 10670 ENSMUSG00000031010.17 ENSMUSG00000031010 ENSMUST00000133997 Usp9x protein_coding Interval_116041 chr4 107177901 107179267 + 0 NA promoter-TSS (ENSMUSG00000028619.15) protein_coding-promoter-TSS (ENSMUSG00000028619.15) -142 ENSMUSG00000028618.11 ENSMUSG00000028618 ENSMUST00000127652 Tmem59 protein_coding Interval_135356 chr6 38585488 38586507 + 0 NA TTS (ENSMUSG00000029823.16) protein_coding-TTS (ENSMUSG00000029823.16) 34663 ENSMUSG00000029823.16 ENSMUSG00000029823 ENSMUST00000160430 Luc7l2 protein_coding Interval_41385 chr12 113215847 113216307 + 0 NA Intergenic Intergenic 1928 ENSMUSG00000087842.1 ENSMUSG00000087842 ENSMUST00000157217 Gm25622 snRNA Interval_17579 chr10 77913549 77913854 + 0 NA promoter-TSS (ENSMUSG00000093784.1) snoRNA-promoter-TSS (ENSMUSG00000093784.1) 150 ENSMUSG00000093443.1 ENSMUSG00000093443 ENSMUST00000177097 Gm22871 snoRNA Interval_112081 chr4 34550245 34551993 + 0 NA exon (ENSMUSG00000028291.7, exon 1 of 5) protein_coding-exon (ENSMUSG00000028291.7, exon 1 of 5) 168 ENSMUSG00000028291.7 ENSMUSG00000028291 ENSMUST00000132230 Akirin2 protein_coding Interval_65055 chr16 18733133 18733673 + 0 NA Intergenic Intergenic -43444 ENSMUSG00000041378.2 ENSMUSG00000041378 ENSMUST00000043577 Cldn5 protein_coding Interval_18000 chr10 81304908 81305507 + 0 NA exon (ENSMUSG00000034902.17, exon 3 of 19) protein_coding-exon (ENSMUSG00000034902.17, exon 3 of 19) -2290 ENSMUSG00000090230.1 ENSMUSG00000090230 ENSMUST00000163009 Gm16315 antisense Interval_128302 chr5 112421903 112422644 + 0 NA intron (ENSMUSG00000058153.15, intron 14 of 14) protein_coding-intron (ENSMUSG00000058153.15, intron 16 of 16) -27153 ENSMUSG00000072722.2 ENSMUSG00000072722 ENSMUST00000100882 Gm6588 protein_coding Interval_94056 chr2 83010910 83011090 + 0 NA Intergenic Intergenic 67366 ENSMUSG00000075249.12 ENSMUSG00000075249 ENSMUST00000132967 Fsip2 protein_coding Interval_168869 chr9 88240428 88241947 + 0 NA Intergenic Intergenic -18708 ENSMUSG00000100782.1 ENSMUSG00000100782 ENSMUST00000190118 Gm28231 lincRNA Interval_155064 chr8 26077152 26078040 + 0 NA promoter-TSS (ENSMUSG00000037234.17) protein_coding-promoter-TSS (ENSMUSG00000037234.17) -5013 ENSMUSG00000085437.8 ENSMUSG00000085437 ENSMUST00000144750 1700047A11Rik antisense Interval_134274 chr6 24378949 24379493 + 0 NA Intergenic Intergenic 135846 ENSMUSG00000046192.4 ENSMUSG00000046192 ENSMUST00000052277 Iqub protein_coding Interval_15291 chr10 44169377 44170381 + 0 NA promoter-TSS (ENSMUSG00000091358.2) transcribed_processed_pseudogene-promoter-TSS (ENSMUSG00000091358.2) -32 ENSMUSG00000091358.2 ENSMUSG00000091358 ENSMUST00000215938 Speer5-ps1 transcribed_processed_pseudogene Interval_123582 chr5 33621292 33621854 + 0 NA intron (ENSMUSG00000037339.17, intron 1 of 4) protein_coding-intron (ENSMUSG00000037339.17, intron 1 of 4) 7489 ENSMUSG00000037339.17 ENSMUSG00000037339 ENSMUST00000140043 Fam53a protein_coding Interval_138763 chr6 91692084 91692517 + 0 NA promoter-TSS (ENSMUSG00000108784.1) TEC-promoter-TSS (ENSMUSG00000108784.1) -692 ENSMUSG00000108784.1 ENSMUSG00000108784 ENSMUST00000206152 4930517G19Rik TEC Interval_61966 chr15 85559439 85561202 + 0 NA intron (ENSMUSG00000022382.15, intron 1 of 3) protein_coding-intron (ENSMUSG00000022382.15, intron 1 of 3) 6702 ENSMUSG00000022382.15 ENSMUSG00000022382 ENSMUST00000230299 Wnt7b protein_coding Interval_132720 chr5 147375584 147375940 + 0 NA intron (ENSMUSG00000042817.15, intron 3 of 9) protein_coding-intron (ENSMUSG00000042817.15, intron 3 of 23) -23792 ENSMUSG00000097228.1 ENSMUSG00000097228 ENSMUST00000181648 Gm26597 antisense Interval_47885 chr13 94159003 94159294 + 0 NA intron (ENSMUSG00000045312.12, intron 1 of 1) protein_coding-intron (ENSMUSG00000045312.12, intron 2 of 3) -19031 ENSMUSG00000087319.1 ENSMUSG00000087319 ENSMUST00000134284 Gm15907 lincRNA Interval_80964 chr18 51314253 51314490 + 0 NA intron (ENSMUSG00000073565.5, intron 2 of 2) protein_coding-intron (ENSMUSG00000073565.5, intron 2 of 2) -60096 ENSMUSG00000095482.1 ENSMUSG00000095482 ENSMUST00000082886 Gm25739 snRNA Interval_11844 chr1 186230797 186231045 + 0 NA Intergenic Intergenic 48664 ENSMUSG00000102790.1 ENSMUSG00000102790 ENSMUST00000193401 Gm37272 TEC Interval_9466 chr1 157439959 157440829 + 0 NA Intergenic Intergenic -21558 ENSMUSG00000033488.11 ENSMUSG00000033488 ENSMUST00000194220 Cryzl2 protein_coding Interval_105407 chr3 86033588 86033954 + 0 NA intron (ENSMUSG00000028082.14, intron 1 of 20) protein_coding-intron (ENSMUSG00000028082.14, intron 1 of 20) -31280 ENSMUSG00000049013.3 ENSMUSG00000049013 ENSMUST00000061343 Prss48 protein_coding Interval_22758 chr11 14861474 14861902 + 0 NA Intergenic Intergenic 81661 ENSMUSG00000082156.1 ENSMUSG00000082156 ENSMUST00000117791 Gm12008 processed_pseudogene Interval_39274 chr12 86385967 86388503 + 0 NA intron (ENSMUSG00000021255.17, intron 1 of 6) protein_coding-intron (ENSMUSG00000021255.17, intron 1 of 6) 39258 ENSMUSG00000113230.1 ENSMUSG00000113230 ENSMUST00000221001 Gm48101 processed_pseudogene Interval_11 GL456210.1 150760 151130 + 0 NA NA NA NA NA Interval_107868 chr3 116423115 116425386 + 0 NA promoter-TSS (ENSMUSG00000033502.15) protein_coding-promoter-TSS (ENSMUSG00000033502.15) 4495 ENSMUSG00000033502.15 ENSMUSG00000033502 ENSMUST00000136994 Cdc14a protein_coding Interval_2194 chr1 36957174 36957819 + 0 NA TTS (ENSMUSG00000080054.3) processed_pseudogene-TTS (ENSMUSG00000080054.3) 931 ENSMUSG00000080054.3 ENSMUSG00000080054 ENSMUST00000116168 Rpl12-ps1 processed_pseudogene Interval_21707 chr11 3833926 3835766 + 0 NA intron (ENSMUSG00000020435.17, intron 1 of 2) protein_coding-intron (ENSMUSG00000020435.17, intron 1 of 13) -38109 ENSMUSG00000084077.1 ENSMUSG00000084077 ENSMUST00000121172 Gm11952 processed_pseudogene Interval_10723 chr1 173481467 173481891 + 0 NA exon (ENSMUSG00000037849.8, exon 4 of 7) protein_coding-exon (ENSMUSG00000037849.8, exon 4 of 7) -7753 ENSMUSG00000037849.8 ENSMUSG00000037849 ENSMUST00000169797 Ifi206 protein_coding Interval_33914 chr11 119381805 119382564 + 0 NA Intergenic Intergenic -8288 ENSMUSG00000088015.1 ENSMUSG00000088015 ENSMUST00000157390 Mir1932 miRNA Interval_68474 chr16 77643921 77645096 + 0 NA intron (ENSMUSG00000090386.10, intron 2 of 4) processed_transcript-intron (ENSMUSG00000090386.10, intron 7 of 8) -1765 ENSMUSG00000065472.1 ENSMUSG00000065472 ENSMUST00000083538 Mir125b-2 miRNA Interval_133456 chr6 5255751 5256682 + 0 NA promoter-TSS (ENSMUSG00000029759.9) protein_coding-promoter-TSS (ENSMUSG00000029759.9) -1350 ENSMUSG00000029759.9 ENSMUSG00000029759 ENSMUST00000176039 Pon3 protein_coding Interval_24186 chr11 31081594 31082010 + 0 NA intron (ENSMUSG00000020305.13, intron 8 of 9) protein_coding-intron (ENSMUSG00000020305.13, intron 8 of 9) -38201 ENSMUSG00000082049.1 ENSMUSG00000082049 ENSMUST00000120846 Gm12105 processed_pseudogene Interval_162695 chr9 7880372 7881056 + 0 NA Intergenic Intergenic -20388 ENSMUSG00000032000.17 ENSMUSG00000032000 ENSMUST00000159672 Birc3 protein_coding Interval_161482 chr8 120657277 120658812 + 0 NA exon (ENSMUSG00000031819.13, exon 2 of 2) protein_coding-exon (ENSMUSG00000031819.13, exon 2 of 2) 10035 ENSMUSG00000097919.1 ENSMUSG00000097919 ENSMUST00000181333 Gm27021 protein_coding Interval_98639 chr2 153730208 153730404 + 0 NA TTS (ENSMUSG00000082079.2) protein_coding-TTS (ENSMUSG00000082079.2) -11296 ENSMUSG00000027479.14 ENSMUSG00000027479 ENSMUST00000123570 Mapre1 protein_coding Interval_160235 chr8 107330870 107331206 + 0 NA intron (ENSMUSG00000003847.16, intron 3 of 14) protein_coding-intron (ENSMUSG00000003847.16, intron 2 of 12) 37568 ENSMUSG00000003847.16 ENSMUSG00000003847 ENSMUST00000147588 Nfat5 protein_coding Interval_83030 chr18 80610369 80610673 + 0 NA intron (ENSMUSG00000033016.16, intron 9 of 9) protein_coding-intron (ENSMUSG00000033016.16, intron 9 of 9) -1546 ENSMUSG00000033016.16 ENSMUSG00000033016 ENSMUST00000236711 Nfatc1 protein_coding Interval_110410 chr3 157876662 157877349 + 0 NA Intergenic Intergenic 11869 ENSMUSG00000104862.1 ENSMUSG00000104862 ENSMUST00000200636 Gm6520 processed_pseudogene Interval_130502 chr5 128444856 128445302 + 0 NA intron (ENSMUSG00000106275.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000106275.1, intron 1 of 1) 663 ENSMUSG00000106275.1 ENSMUSG00000106275 ENSMUST00000200324 Gm42495 lincRNA Interval_157659 chr8 72135013 72137287 + 0 NA exon (ENSMUSG00000031799.10, exon 1 of 1) protein_coding-exon (ENSMUSG00000031799.10, exon 1 of 1) 892 ENSMUSG00000031799.10 ENSMUSG00000031799 ENSMUST00000238492 Tpm4 protein_coding Interval_6 GL456210.1 54918 56457 + 0 NA NA NA NA NA Interval_45748 chr13 57589239 57589775 + 0 NA intron (ENSMUSG00000056222.15, intron 4 of 10) protein_coding-intron (ENSMUSG00000056222.15, intron 2 of 9) 312829 ENSMUSG00000114411.1 ENSMUSG00000114411 ENSMUST00000224461 Gm48176 processed_pseudogene Interval_93630 chr2 75222940 75223232 + 0 NA intron (ENSMUSG00000100303.3, intron 2 of 5) lincRNA-intron (ENSMUSG00000100303.3, intron 2 of 5) 30809 ENSMUSG00000075276.5 ENSMUSG00000075276 ENSMUST00000122260 Gm13653 processed_pseudogene Interval_79728 chr18 34767934 34768974 + 0 NA exon (ENSMUSG00000034300.17, exon 4 of 5) protein_coding-exon (ENSMUSG00000034300.17, exon 4 of 5) 8881 ENSMUSG00000034300.17 ENSMUSG00000034300 ENSMUST00000235929 Fam53c protein_coding Interval_75094 chr17 63320799 63322083 + 0 NA intron (ENSMUSG00000023965.13, intron 3 of 5) protein_coding-intron (ENSMUSG00000023965.13, intron 6 of 8) -8468 ENSMUSG00000090565.7 ENSMUSG00000090565 ENSMUST00000171379 4930405O22Rik sense_intronic Interval_127178 chr5 100856889 100857096 + 0 NA intron (ENSMUSG00000029314.14, intron 3 of 13) protein_coding-intron (ENSMUSG00000029314.14, intron 2 of 12) -9825 ENSMUSG00000087611.1 ENSMUSG00000087611 ENSMUST00000142871 4930458D05Rik antisense Interval_54664 chr14 73106304 73107822 + 0 NA Intergenic Intergenic -35800 ENSMUSG00000022106.14 ENSMUSG00000022106 ENSMUST00000170278 Rcbtb2 protein_coding Interval_156911 chr8 61617224 61617700 + 0 NA intron (ENSMUSG00000058056.16, intron 10 of 21) protein_coding-intron (ENSMUSG00000058056.16, intron 10 of 19) -101562 ENSMUSG00000058056.16 ENSMUSG00000058056 ENSMUST00000123523 Palld protein_coding Interval_82766 chr18 76934447 76936055 + 0 NA intron (ENSMUSG00000090000.2, intron 2 of 3) protein_coding-intron (ENSMUSG00000090000.2, intron 1 of 2) -4033 ENSMUSG00000090000.2 ENSMUSG00000090000 ENSMUST00000152369 Ier3ip1 protein_coding Interval_10475 chr1 171204036 171204615 + 0 NA Intergenic Intergenic -8057 ENSMUSG00000038370.6 ENSMUSG00000038370 ENSMUST00000111332 Pcp4l1 protein_coding Interval_41364 chr12 113095933 113100131 + 0 NA promoter-TSS (ENSMUSG00000021144.14) protein_coding-promoter-TSS (ENSMUSG00000021144.14) 23254 ENSMUSG00000012211.13 ENSMUSG00000012211 ENSMUST00000155492 Tex22 protein_coding Interval_158228 chr8 80145693 80146207 + 0 NA Intergenic Intergenic -7283 ENSMUSG00000109593.1 ENSMUSG00000109593 ENSMUST00000210143 Gm45431 lincRNA Interval_149907 chr7 102484348 102485926 + 0 NA exon (ENSMUSG00000043925.7, exon 2 of 2) protein_coding-exon (ENSMUSG00000043925.7, exon 2 of 2) 3176 ENSMUSG00000043925.7 ENSMUSG00000043925 ENSMUST00000051201 Olfr544 protein_coding Interval_53022 chr14 53583032 53583228 + 0 NA Intergenic Intergenic -3370 ENSMUSG00000104738.1 ENSMUSG00000104738 ENSMUST00000198999 Trav3-2 TR_V_pseudogene Interval_147974 chr7 75999084 75999526 + 0 NA Intergenic Intergenic -1519 ENSMUSG00000108495.1 ENSMUSG00000108495 ENSMUST00000206543 Gm45139 TEC Interval_51992 chr14 34468772 34469041 + 0 NA intron (ENSMUSG00000021796.15, intron 1 of 4) protein_coding-intron (ENSMUSG00000021796.15, intron 1 of 12) -32809 ENSMUSG00000090779.1 ENSMUSG00000090779 ENSMUST00000171248 Gm17110 antisense Interval_6800 chr1 119547904 119549547 + 0 NA exon (ENSMUSG00000026383.14, exon 25 of 25) protein_coding-exon (ENSMUSG00000026383.14, exon 25 of 25) -12560 ENSMUSG00000101731.1 ENSMUSG00000101731 ENSMUST00000186206 3830432H09Rik lincRNA Interval_16891 chr10 69533593 69534089 + 0 NA promoter-TSS (ENSMUSG00000069601.14) protein_coding-promoter-TSS (ENSMUSG00000069601.14) 32520 ENSMUSG00000112729.1 ENSMUSG00000112729 ENSMUST00000220152 Gm46231 processed_pseudogene Interval_49667 chr13 113870788 113871000 + 0 NA intron (ENSMUSG00000042348.10, intron 1 of 3) protein_coding-intron (ENSMUSG00000042348.10, intron 1 of 4) 76301 ENSMUSG00000042348.10 ENSMUSG00000042348 ENSMUST00000224068 Arl15 protein_coding Interval_17442 chr10 76752554 76753344 + 0 NA Intergenic Intergenic -22676 ENSMUSG00000112291.1 ENSMUSG00000112291 ENSMUST00000218963 Gm48276 lincRNA Interval_6789 chr1 119484376 119484726 + 0 NA intron (ENSMUSG00000004451.14, intron 1 of 1) protein_coding-intron (ENSMUSG00000004451.14, intron 1 of 4) -14926 ENSMUSG00000101437.1 ENSMUSG00000101437 ENSMUST00000190805 Gm29454 processed_pseudogene Interval_125874 chr5 75209722 75210536 + 0 NA Intergenic Intergenic 33298 ENSMUSG00000099060.1 ENSMUSG00000099060 ENSMUST00000183797 Mir7025 miRNA Interval_81954 chr18 66366504 66367170 + 0 NA Intergenic Intergenic -27460 ENSMUSG00000117680.1 ENSMUSG00000117680 ENSMUST00000236388 Gm50148 processed_pseudogene Interval_52621 chr14 48073287 48074071 + 0 NA Intergenic Intergenic 6073 ENSMUSG00000062081.6 ENSMUSG00000062081 ENSMUST00000180532 Gm6055 processed_pseudogene Interval_163786 chr9 25693703 25693964 + 0 NA Intergenic Intergenic -8470 ENSMUSG00000110857.1 ENSMUSG00000110857 ENSMUST00000215641 Gm48330 processed_pseudogene Interval_4384 chr1 73641649 73643694 + 0 NA intron (ENSMUSG00000100301.6, intron 2 of 3) lincRNA-intron (ENSMUSG00000100301.6, intron 7 of 8) 101276 ENSMUSG00000100301.6 ENSMUSG00000100301 ENSMUST00000189514 6030407O03Rik lincRNA Interval_138815 chr6 92162084 92162328 + 0 NA intron (ENSMUSG00000005893.14, intron 10 of 12) protein_coding-intron (ENSMUSG00000005893.14, intron 12 of 14) -15913 ENSMUSG00000108199.1 ENSMUSG00000108199 ENSMUST00000204538 Gm44249 TEC Interval_30601 chr11 95384251 95385192 + 0 NA promoter-TSS (ENSMUSG00000020873.15) protein_coding-promoter-TSS (ENSMUSG00000020873.15) -36 ENSMUSG00000020873.15 ENSMUSG00000020873 ENSMUST00000143090 Slc35b1 protein_coding Interval_108470 chr3 127482583 127482931 + 0 NA intron (ENSMUSG00000032826.19, intron 1 of 1) protein_coding-intron (ENSMUSG00000032826.19, intron 1 of 1) -1330 ENSMUSG00000106369.1 ENSMUSG00000106369 ENSMUST00000196541 Gm43355 transcribed_unprocessed_pseudogene Interval_16020 chr10 60161517 60162928 + 0 NA Intergenic Intergenic 32017 ENSMUSG00000057337.13 ENSMUSG00000057337 ENSMUST00000167915 Chst3 protein_coding Interval_146933 chr7 55990799 55991114 + 0 NA intron (ENSMUSG00000047037.5, intron 3 of 4) protein_coding-intron (ENSMUSG00000047037.5, intron 3 of 4) 4214 ENSMUSG00000108640.1 ENSMUSG00000108640 ENSMUST00000206943 Gm44508 TEC Interval_142406 chr6 141673286 141673475 + 0 NA intron (ENSMUSG00000030236.10, intron 10 of 13) protein_coding-intron (ENSMUSG00000030236.10, intron 12 of 15) 38922 ENSMUSG00000030236.10 ENSMUSG00000030236 ENSMUST00000160179 Slco1b2 protein_coding Interval_5657 chr1 90602820 90603932 + 0 NA promoter-TSS (ENSMUSG00000034432.11) protein_coding-promoter-TSS (ENSMUSG00000034432.11) -100 ENSMUSG00000034432.11 ENSMUSG00000034432 ENSMUST00000186882 Cops8 protein_coding Interval_151227 chr7 119859605 119862157 + 0 NA intron (ENSMUSG00000048787.13, intron 1 of 2) protein_coding-intron (ENSMUSG00000048787.13, intron 1 of 2) 17016 ENSMUSG00000030924.16 ENSMUSG00000030924 ENSMUST00000151248 Rexo5 protein_coding Interval_36806 chr12 54202658 54204334 + 0 NA exon (ENSMUSG00000035105.5, exon 1 of 5) protein_coding-exon (ENSMUSG00000035105.5, exon 1 of 5) 364 ENSMUSG00000035105.5 ENSMUSG00000035105 ENSMUST00000039516 Egln3 protein_coding Interval_149925 chr7 102686830 102687696 + 0 NA promoter-TSS (ENSMUSG00000073968.4) protein_coding-promoter-TSS (ENSMUSG00000073968.4) 7 ENSMUSG00000073968.4 ENSMUSG00000073968 ENSMUST00000209654 Trim68 protein_coding Interval_56845 chr14 122392068 122393790 + 0 NA intron (ENSMUSG00000115263.1, intron 2 of 4) protein_coding-intron (ENSMUSG00000025545.10, intron 7 of 7) -4769 ENSMUSG00000095311.1 ENSMUSG00000095311 ENSMUST00000175481 Gm25464 snRNA Interval_54411 chr14 69024105 69024564 + 0 NA intron (ENSMUSG00000114833.1, intron 2 of 2) antisense-intron (ENSMUSG00000114833.1, intron 2 of 2) -4904 ENSMUSG00000014813.9 ENSMUSG00000014813 ENSMUST00000014957 Stc1 protein_coding Interval_142690 chr6 145018141 145019603 + 0 NA TTS (ENSMUSG00000030268.17) protein_coding-TTS (ENSMUSG00000030268.17) 19316 ENSMUSG00000088867.1 ENSMUSG00000088867 ENSMUST00000158242 Gm23071 rRNA Interval_103998 chr3 56840126 56840357 + 0 NA Intergenic Intergenic -11454 ENSMUSG00000105113.1 ENSMUSG00000105113 ENSMUST00000200018 Gm2622 processed_pseudogene Interval_161055 chr8 117198110 117198682 + 0 NA intron (ENSMUSG00000052557.11, intron 9 of 10) protein_coding-intron (ENSMUSG00000052557.11, intron 9 of 10) 40259 ENSMUSG00000052557.11 ENSMUSG00000052557 ENSMUST00000162997 Gan protein_coding Interval_106473 chr3 96571423 96572604 + 0 NA Intergenic Intergenic -4971 ENSMUSG00000087610.1 ENSMUSG00000087610 ENSMUST00000148290 Gm16253 protein_coding Interval_74815 chr17 56700759 56700986 + 0 NA intron (ENSMUSG00000002372.9, intron 4 of 7) protein_coding-intron (ENSMUSG00000002372.9, intron 4 of 15) -16911 ENSMUSG00000002379.7 ENSMUSG00000002379 ENSMUST00000233233 Ndufa11 protein_coding Interval_66728 chr16 36693793 36694840 + 0 NA intron (ENSMUSG00000022900.14, intron 1 of 4) protein_coding-intron (ENSMUSG00000022900.14, intron 1 of 7) 283 ENSMUSG00000022900.14 ENSMUSG00000022900 ENSMUST00000128084 Ildr1 protein_coding Interval_55607 chr14 95585645 95586091 + 0 NA Intergenic Intergenic 144112 ENSMUSG00000115679.1 ENSMUSG00000115679 ENSMUST00000228033 Gm48995 processed_pseudogene Interval_59746 chr15 59008191 59008398 + 0 NA intron (ENSMUSG00000022353.10, intron 3 of 14) protein_coding-intron (ENSMUSG00000022353.10, intron 3 of 14) 24158 ENSMUSG00000115062.1 ENSMUSG00000115062 ENSMUST00000226216 4930544F09Rik antisense Interval_112921 chr4 46089173 46090205 + 0 NA intron (ENSMUSG00000028328.13, intron 3 of 3) protein_coding-intron (ENSMUSG00000028328.13, intron 4 of 9) -28491 ENSMUSG00000088069.1 ENSMUSG00000088069 ENSMUST00000157444 Gm23250 misc_RNA Interval_65588 chr16 23702783 23703434 + 0 NA Intergenic Intergenic 15647 ENSMUSG00000083681.1 ENSMUSG00000083681 ENSMUST00000120629 Gm6640 processed_pseudogene Interval_7896 chr1 134435122 134436052 + 0 NA promoter-TSS (ENSMUSG00000101061.1) lincRNA-promoter-TSS (ENSMUSG00000101061.1) -41 ENSMUSG00000101061.1 ENSMUSG00000101061 ENSMUST00000188474 Platr1 lincRNA Interval_168217 chr9 78000301 78000498 + 0 NA intron (ENSMUSG00000111610.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000111610.1, intron 1 of 1) 7800 ENSMUSG00000111610.1 ENSMUSG00000111610 ENSMUST00000216017 Gm34829 lincRNA Interval_21240 chr10 127391553 127392383 + 0 NA intron (ENSMUSG00000025404.15, intron 2 of 3) protein_coding-intron (ENSMUSG00000025404.15, intron 1 of 25) 12424 ENSMUSG00000089369.1 ENSMUSG00000089369 ENSMUST00000158744 Gm23819 snRNA Interval_10439 chr1 170876884 170877833 + 0 NA intron (ENSMUSG00000026659.13, intron 4 of 4) protein_coding-intron (ENSMUSG00000026659.13, intron 5 of 5) 7646 ENSMUSG00000026659.13 ENSMUSG00000026659 ENSMUST00000172042 Dusp12 protein_coding Interval_26866 chr11 61183519 61184080 + 0 NA Intergenic Intergenic -15524 ENSMUSG00000042506.15 ENSMUSG00000042506 ENSMUST00000174220 Usp22 protein_coding Interval_164697 chr9 40649856 40650136 + 0 NA Intergenic Intergenic 19111 ENSMUSG00000110992.1 ENSMUSG00000110992 ENSMUST00000216204 Gm35371 lincRNA Interval_127422 chr5 103827868 103828929 + 0 NA exon (ENSMUSG00000029313.18, exon 10 of 20) protein_coding-exon (ENSMUSG00000029313.18, exon 10 of 20) 45971 ENSMUSG00000029312.12 ENSMUSG00000029312 ENSMUST00000147184 Klhl8 protein_coding Interval_115069 chr4 89216864 89217544 + 0 NA intron (ENSMUSG00000107513.1, intron 1 of 1) processed_pseudogene-intron (ENSMUSG00000107513.1, intron 1 of 1) 340 ENSMUSG00000107513.1 ENSMUSG00000107513 ENSMUST00000203590 Tgif2-ps1 processed_pseudogene Interval_64331 chr16 10545026 10545877 + 0 NA promoter-TSS (ENSMUSG00000068663.14) protein_coding-promoter-TSS (ENSMUSG00000068663.14) 87 ENSMUSG00000068663.14 ENSMUSG00000068663 ENSMUST00000145866 Clec16a protein_coding Interval_126823 chr5 93175157 93175466 + 0 NA TTS (ENSMUSG00000058013.11) protein_coding-TTS (ENSMUSG00000058013.11) -1659 ENSMUSG00000107019.1 ENSMUSG00000107019 ENSMUST00000202150 Gm43682 TEC Interval_113818 chr4 59047131 59047946 + 0 NA exon (ENSMUSG00000038598.9, exon 27 of 28) protein_coding-exon (ENSMUSG00000038598.9, exon 27 of 28) 11766 ENSMUSG00000038607.12 ENSMUSG00000038607 ENSMUST00000126507 Gng10 protein_coding Interval_52908 chr14 52003845 52004503 + 0 NA promoter-TSS (ENSMUSG00000004562.16) protein_coding-promoter-TSS (ENSMUSG00000004562.16) -314 ENSMUSG00000004562.16 ENSMUSG00000004562 ENSMUST00000182504 Arhgef40 protein_coding Interval_73751 chr17 43229652 43230364 + 0 NA Intergenic Intergenic -40321 ENSMUSG00000041293.5 ENSMUSG00000041293 ENSMUST00000047399 Adgrf1 protein_coding Interval_74924 chr17 57334650 57336462 + 0 NA Intergenic Intergenic -23143 ENSMUSG00000004730.15 ENSMUSG00000004730 ENSMUST00000004850 Adgre1 protein_coding Interval_118046 chr4 128593266 128593502 + 0 NA intron (ENSMUSG00000061894.15, intron 2 of 7) protein_coding-intron (ENSMUSG00000061894.15, intron 2 of 7) 16650 ENSMUSG00000061894.15 ENSMUSG00000061894 ENSMUST00000141040 Zscan20 protein_coding Interval_140679 chr6 120508493 120508903 + 0 NA TTS (ENSMUSG00000058979.7) protein_coding-TTS (ENSMUSG00000058979.7) -3751 ENSMUSG00000093739.1 ENSMUSG00000093739 ENSMUST00000177251 Gm20692 antisense Interval_77076 chr17 86279680 86279890 + 0 NA intron (ENSMUSG00000045038.14, intron 1 of 14) protein_coding-intron (ENSMUSG00000045038.14, intron 2 of 15) 7393 ENSMUSG00000100738.1 ENSMUSG00000100738 ENSMUST00000191222 2010106C02Rik antisense Interval_103302 chr3 38321140 38321414 + 0 NA Intergenic Intergenic -48121 ENSMUSG00000106008.1 ENSMUSG00000106008 ENSMUST00000196616 Gm42920 lincRNA Interval_35028 chr12 16743239 16743590 + 0 NA intron (ENSMUSG00000036523.16, intron 1 of 3) protein_coding-intron (ENSMUSG00000036523.16, intron 1 of 32) 23809 ENSMUSG00000105567.1 ENSMUSG00000105567 ENSMUST00000199946 Gm44305 miRNA Interval_123069 chr5 29400313 29400604 + 0 NA Intergenic Intergenic 21759 ENSMUSG00000097561.1 ENSMUSG00000097561 ENSMUST00000181005 4632411P08Rik lincRNA Interval_52756 chr14 49407390 49407798 + 0 NA intron (ENSMUSG00000021852.14, intron 1 of 2) protein_coding-intron (ENSMUSG00000021852.14, intron 1 of 7) 107758 ENSMUSG00000115096.1 ENSMUSG00000115096 ENSMUST00000228016 Gm48940 antisense Interval_151012 chr7 117695626 117696060 + 0 NA Intergenic Intergenic -80951 ENSMUSG00000088116.1 ENSMUSG00000088116 ENSMUST00000157491 Gm24063 miRNA Interval_64442 chr16 11417922 11418723 + 0 NA intron (ENSMUSG00000071669.14, intron 9 of 20) protein_coding-intron (ENSMUSG00000071669.14, intron 2 of 13) 77984 ENSMUSG00000082653.1 ENSMUSG00000082653 ENSMUST00000117770 Gm15897 processed_pseudogene Interval_49889 chr13 117825204 117825583 + 0 NA intron (ENSMUSG00000021730.8, intron 3 of 7) protein_coding-intron (ENSMUSG00000021730.8, intron 3 of 7) -105382 ENSMUSG00000079048.8 ENSMUSG00000079048 ENSMUST00000110292 4933413L06Rik antisense Interval_112779 chr4 44946945 44949202 + 0 NA exon (ENSMUSG00000084854.1, exon 2 of 2) lincRNA-exon (ENSMUSG00000084854.1, exon 2 of 2) 4320 ENSMUSG00000084854.1 ENSMUSG00000084854 ENSMUST00000154177 Gm12678 lincRNA Interval_33181 chr11 115049491 115049710 + 0 NA Intergenic Intergenic -1191 ENSMUSG00000069607.4 ENSMUSG00000069607 ENSMUST00000092459 Cd300ld3 protein_coding Interval_171308 chr9 116254866 116255462 + 0 NA Intergenic Intergenic 36362 ENSMUSG00000111324.1 ENSMUSG00000111324 ENSMUST00000217302 Gm31410 lincRNA Interval_143458 chr7 6947877 6949302 + 0 NA intron (ENSMUSG00000051527.11, intron 1 of 4) protein_coding-intron (ENSMUSG00000051527.11, intron 5 of 7) 26875 ENSMUSG00000108043.2 ENSMUSG00000108043 ENSMUST00000203351 Zim3 antisense Interval_93343 chr2 72126964 72127181 + 0 NA intron (ENSMUSG00000085439.1, intron 1 of 3) protein_coding-intron (ENSMUSG00000049044.16, intron 1 of 27) 21724 ENSMUSG00000085439.1 ENSMUSG00000085439 ENSMUST00000126462 Rapgef4os1 antisense Interval_170568 chr9 108746325 108747901 + 0 NA TTS (ENSMUSG00000032601.13) protein_coding-TTS (ENSMUSG00000032601.13) -8255 ENSMUSG00000065674.1 ENSMUSG00000065674 ENSMUST00000083740 Gm24259 snRNA Interval_79605 chr18 33968797 33969133 + 0 NA intron (ENSMUSG00000024376.7, intron 2 of 2) protein_coding-intron (ENSMUSG00000024376.7, intron 2 of 23) 38001 ENSMUSG00000024376.7 ENSMUSG00000024376 ENSMUST00000237971 Epb41l4a protein_coding Interval_147621 chr7 70280158 70281941 + 0 NA intron (ENSMUSG00000109097.1, intron 3 of 3) lincRNA-intron (ENSMUSG00000109097.1, intron 1 of 3) -31273 ENSMUSG00000099387.1 ENSMUSG00000099387 ENSMUST00000188229 Gm29327 lincRNA Interval_147298 chr7 65638925 65639559 + 0 NA Intergenic Intergenic -3456 ENSMUSG00000086232.2 ENSMUSG00000086232 ENSMUST00000211354 Gm7546 transcribed_unprocessed_pseudogene Interval_33054 chr11 113909992 113910356 + 0 NA intron (ENSMUSG00000041592.16, intron 2 of 11) protein_coding-intron (ENSMUSG00000041592.16, intron 2 of 44) -99751 ENSMUSG00000041592.16 ENSMUSG00000041592 ENSMUST00000144301 Sdk2 protein_coding Interval_156926 chr8 61735895 61736359 + 0 NA intron (ENSMUSG00000058056.16, intron 2 of 21) protein_coding-intron (ENSMUSG00000058056.16, intron 2 of 19) 85389 ENSMUSG00000110131.1 ENSMUSG00000110131 ENSMUST00000210904 Gm18066 processed_pseudogene Interval_17184 chr10 74425944 74426299 + 0 NA intron (ENSMUSG00000052613.16, intron 17 of 34) protein_coding-intron (ENSMUSG00000052613.16, intron 16 of 30) -394601 ENSMUSG00000112686.1 ENSMUSG00000112686 ENSMUST00000218638 Gm7034 processed_pseudogene Interval_172142 chrX 7947388 7948638 + 0 NA promoter-TSS (ENSMUSG00000031161.15) protein_coding-promoter-TSS (ENSMUSG00000031161.15) 2855 ENSMUSG00000082054.1 ENSMUSG00000082054 ENSMUST00000117520 Psmb6-ps processed_pseudogene Interval_148497 chr7 81788715 81790019 + 0 NA promoter-TSS (ENSMUSG00000025102.14) protein_coding-promoter-TSS (ENSMUSG00000025102.14) -110 ENSMUSG00000109485.1 ENSMUSG00000109485 ENSMUST00000208375 Gm45016 antisense Interval_108193 chr3 122406477 122406985 + 0 NA intron (ENSMUSG00000028121.8, intron 6 of 6) protein_coding-intron (ENSMUSG00000028121.8, intron 6 of 6) -13026 ENSMUSG00000028121.8 ENSMUSG00000028121 ENSMUST00000197959 Bcar3 protein_coding Interval_125507 chr5 67796787 67797949 + 0 NA intron (ENSMUSG00000037685.15, intron 4 of 5) protein_coding-intron (ENSMUSG00000037685.15, intron 5 of 36) 11368 ENSMUSG00000037685.15 ENSMUSG00000037685 ENSMUST00000141443 Atp8a1 protein_coding Interval_79175 chr18 25427083 25428696 + 0 NA intron (ENSMUSG00000033632.16, intron 11 of 11) protein_coding-intron (ENSMUSG00000033632.16, intron 9 of 9) 36088 ENSMUSG00000089908.1 ENSMUSG00000089908 ENSMUST00000163015 Gm16558 processed_pseudogene Interval_124978 chr5 62945808 62946257 + 0 NA Intergenic Intergenic 134358 ENSMUSG00000090326.2 ENSMUSG00000090326 ENSMUST00000170704 Dthd1 protein_coding Interval_160000 chr8 105672736 105673311 + 0 NA intron (ENSMUSG00000005698.15, intron 5 of 9) protein_coding-intron (ENSMUSG00000005698.15, intron 7 of 11) -2988 ENSMUSG00000005698.15 ENSMUSG00000005698 ENSMUST00000156436 Ctcf protein_coding Interval_57176 chr15 7159648 7160676 + 0 NA intron (ENSMUSG00000054263.12, intron 4 of 4) protein_coding-intron (ENSMUSG00000054263.12, intron 4 of 19) 69548 ENSMUSG00000054263.12 ENSMUSG00000054263 ENSMUST00000171588 Lifr protein_coding Interval_129686 chr5 121734173 121734449 + 0 NA intron (ENSMUSG00000042605.16, intron 1 of 5) protein_coding-intron (ENSMUSG00000042605.16, intron 1 of 24) -6908 ENSMUSG00000089729.1 ENSMUSG00000089729 ENSMUST00000162348 Gm16552 antisense Interval_44559 chr13 46023827 46025267 + 0 NA Intergenic Intergenic -36050 ENSMUSG00000113860.1 ENSMUSG00000113860 ENSMUST00000222657 Gm45949 lincRNA Interval_14443 chr10 33811395 33812064 + 0 NA Intergenic Intergenic -2231 ENSMUSG00000071343.2 ENSMUSG00000071343 ENSMUST00000105222 Gm10327 processed_pseudogene Interval_154467 chr8 18431765 18433206 + 0 NA Intergenic Intergenic 80160 ENSMUSG00000077675.1 ENSMUSG00000077675 ENSMUST00000104487 Gm24469 snoRNA Interval_142909 chr6 146849376 146849628 + 0 NA promoter-TSS (ENSMUSG00000030292.10) protein_coding-promoter-TSS (ENSMUSG00000030292.10) -2299 ENSMUSG00000107964.1 ENSMUSG00000107964 ENSMUST00000204503 4930447C11Rik TEC Interval_103295 chr3 38242796 38243138 + 0 NA Intergenic Intergenic 19516 ENSMUSG00000105943.1 ENSMUSG00000105943 ENSMUST00000198365 Gm2965 processed_pseudogene Interval_40585 chr12 105854816 105855028 + 0 NA Intergenic Intergenic -9340 ENSMUSG00000113537.1 ENSMUSG00000113537 ENSMUST00000221840 Gm48807 lincRNA Interval_150033 chr7 105222078 105222452 + 0 NA Intergenic Intergenic -17110 ENSMUSG00000048425.3 ENSMUSG00000048425 ENSMUST00000050157 Olfr686 protein_coding Interval_68683 chr16 84720655 84721531 + 0 NA intron (ENSMUSG00000022889.7, intron 8 of 9) protein_coding-intron (ENSMUSG00000022889.7, intron 8 of 9) 6953 ENSMUSG00000065397.1 ENSMUSG00000065397 ENSMUST00000083463 Mir155 miRNA Interval_113944 chr4 60632631 60633125 + 0 NA Intergenic Intergenic 27359 ENSMUSG00000073834.10 ENSMUSG00000073834 ENSMUST00000154733 Mup11 protein_coding Interval_118114 chr4 129033301 129034036 + 0 NA Intergenic Intergenic 24315 ENSMUSG00000085085.2 ENSMUSG00000085085 ENSMUST00000149472 1700086P04Rik lincRNA Interval_173520 chrX 98222584 98222972 + 0 NA intron (ENSMUSG00000046532.8, intron 1 of 7) protein_coding-intron (ENSMUSG00000046532.8, intron 1 of 7) 74009 ENSMUSG00000046532.8 ENSMUSG00000046532 ENSMUST00000052837 Ar protein_coding Interval_124321 chr5 43909171 43909854 + 0 NA intron (ENSMUSG00000087281.1, intron 2 of 2) protein_coding-intron (ENSMUSG00000029084.5, intron 7 of 7) 373 ENSMUSG00000087281.1 ENSMUSG00000087281 ENSMUST00000154897 Gm16015 antisense Interval_111326 chr4 18922287 18922518 + 0 NA intron (ENSMUSG00000073991.4, intron 4 of 9) protein_coding-intron (ENSMUSG00000073991.4, intron 4 of 9) -42162 ENSMUSG00000083005.1 ENSMUSG00000083005 ENSMUST00000118014 Gm12392 processed_pseudogene Interval_131025 chr5 134632903 134633272 + 0 NA intron (ENSMUSG00000040731.13, intron 1 of 6) protein_coding-intron (ENSMUSG00000040731.13, intron 1 of 5) 6403 ENSMUSG00000040731.13 ENSMUSG00000040731 ENSMUST00000201263 Eif4h protein_coding Interval_9964 chr1 164418416 164419008 + 0 NA intron (ENSMUSG00000026575.15, intron 14 of 15) protein_coding-intron (ENSMUSG00000026575.15, intron 12 of 12) -6001 ENSMUSG00000103493.1 ENSMUSG00000103493 ENSMUST00000194180 Gm37411 TEC Interval_73875 chr17 45119056 45119419 + 0 NA TTS (ENSMUSG00000038954.14) protein_coding-TTS (ENSMUSG00000038954.14) -28000 ENSMUSG00000117044.1 ENSMUSG00000117044 ENSMUST00000233532 Gm35097 lincRNA Interval_118701 chr4 133261881 133263489 + 0 NA intron (ENSMUSG00000028860.13, intron 1 of 2) protein_coding-intron (ENSMUSG00000028860.13, intron 1 of 14) 367 ENSMUSG00000028860.13 ENSMUSG00000028860 ENSMUST00000154911 Sytl1 protein_coding Interval_135978 chr6 49214782 49215927 + 0 NA promoter-TSS (ENSMUSG00000029814.10) protein_coding-promoter-TSS (ENSMUSG00000029814.10) -39497 ENSMUSG00000107962.1 ENSMUSG00000107962 ENSMUST00000204899 Gm43980 TEC Interval_128638 chr5 114436465 114437606 + 0 NA intron (ENSMUSG00000029575.17, intron 5 of 7) protein_coding-intron (ENSMUSG00000029575.17, intron 5 of 8) 6957 ENSMUSG00000029575.17 ENSMUSG00000029575 ENSMUST00000123256 Mmab protein_coding Interval_104276 chr3 62505792 62507516 + 0 NA intron (ENSMUSG00000027770.5, intron 1 of 24) protein_coding-intron (ENSMUSG00000027770.5, intron 1 of 24) -4521 ENSMUSG00000027770.5 ENSMUSG00000027770 ENSMUST00000192223 Dhx36 protein_coding Interval_55938 chr14 102981234 102983368 + 0 NA promoter-TSS (ENSMUSG00000098557.1) protein_coding-promoter-TSS (ENSMUSG00000098557.1) 331 ENSMUSG00000092901.1 ENSMUSG00000092901 ENSMUST00000175160 Mir5130 miRNA Interval_66354 chr16 33342489 33343086 + 0 NA Intergenic Intergenic 37888 ENSMUSG00000097318.2 ENSMUSG00000097318 ENSMUST00000180923 1700007L15Rik bidirectional_promoter_lncRNA Interval_20127 chr10 115147286 115147748 + 0 NA intron (ENSMUSG00000006764.8, intron 6 of 10) protein_coding-intron (ENSMUSG00000006764.8, intron 6 of 10) 28041 ENSMUSG00000006764.8 ENSMUSG00000006764 ENSMUST00000155794 Tph2 protein_coding Interval_8191 chr1 136403720 136404012 + 0 NA Intergenic Intergenic 11628 ENSMUSG00000097403.2 ENSMUSG00000097403 ENSMUST00000194227 9230116N13Rik processed_transcript Interval_129616 chr5 121349540 121350360 + 0 NA intron (ENSMUSG00000042744.16, intron 61 of 75) protein_coding-intron (ENSMUSG00000042744.16, intron 61 of 75) -6894 ENSMUSG00000077347.1 ENSMUSG00000077347 ENSMUST00000104159 Gm24671 snRNA Interval_32916 chr11 113090532 113092386 + 0 NA intron (ENSMUSG00000087259.7, intron 1 of 3) lincRNA-intron (ENSMUSG00000087259.7, intron 1 of 2) 81618 ENSMUSG00000087259.7 ENSMUSG00000087259 ENSMUST00000150712 2610035D17Rik lincRNA Interval_38083 chr12 75555324 75556133 + 0 NA intron (ENSMUSG00000021051.10, intron 2 of 12) protein_coding-intron (ENSMUSG00000021051.10, intron 2 of 13) -24137 ENSMUSG00000112459.1 ENSMUSG00000112459 ENSMUST00000219909 Gm47689 antisense Interval_166233 chr9 57653231 57654469 + 0 NA promoter-TSS (ENSMUSG00000032312.7) protein_coding-promoter-TSS (ENSMUSG00000032312.7) -19783 ENSMUSG00000032312.7 ENSMUSG00000032312 ENSMUST00000213943 Csk protein_coding Interval_81332 chr18 58181012 58181444 + 0 NA intron (ENSMUSG00000024598.9, intron 5 of 11) protein_coding-intron (ENSMUSG00000024598.9, intron 5 of 64) 28698 ENSMUSG00000024598.9 ENSMUSG00000024598 ENSMUST00000235779 Fbn2 protein_coding Interval_67485 chr16 49768278 49769304 + 0 NA intron (ENSMUSG00000087066.1, intron 1 of 2) antisense-intron (ENSMUSG00000087066.1, intron 1 of 2) 30079 ENSMUSG00000087066.1 ENSMUSG00000087066 ENSMUST00000127115 Gm15518 antisense Interval_131781 chr5 139826413 139827133 + 0 NA promoter-TSS (ENSMUSG00000029551.13) protein_coding-promoter-TSS (ENSMUSG00000029551.13) 102 ENSMUSG00000029551.13 ENSMUSG00000029551 ENSMUST00000182743 Psmg3 protein_coding Interval_107330 chr3 105915062 105915431 + 0 NA intron (ENSMUSG00000074344.7, intron 2 of 5) protein_coding-intron (ENSMUSG00000074344.7, intron 2 of 6) 10551 ENSMUSG00000000562.5 ENSMUSG00000000562 ENSMUST00000197613 Adora3 protein_coding Interval_68522 chr16 78357841 78358583 + 0 NA intron (ENSMUSG00000022865.14, intron 7 of 7) protein_coding-intron (ENSMUSG00000022865.14, intron 7 of 7) -14744 ENSMUSG00000116707.1 ENSMUSG00000116707 ENSMUST00000232286 Gm49590 TEC Interval_21249 chr10 127453320 127454215 + 0 NA TTS (ENSMUSG00000025404.15) protein_coding-TTS (ENSMUSG00000025404.15) -5768 ENSMUSG00000025404.15 ENSMUSG00000025404 ENSMUST00000171426 R3hdm2 protein_coding Interval_168888 chr9 88392521 88393363 + 0 NA exon (ENSMUSG00000032422.18, exon 1 of 1) protein_coding-exon (ENSMUSG00000032422.18, exon 1 of 1) 2105 ENSMUSG00000066443.5 ENSMUSG00000066443 ENSMUST00000155008 Gm10163 processed_pseudogene Interval_82745 chr18 76372520 76372795 + 0 NA Intergenic Intergenic 50833 ENSMUSG00000117816.1 ENSMUSG00000117816 ENSMUST00000235901 Gm50360 processed_pseudogene Interval_44254 chr13 43027425 43027850 + 0 NA intron (ENSMUSG00000054728.17, intron 2 of 4) protein_coding-intron (ENSMUSG00000054728.17, intron 2 of 11) 24773 ENSMUSG00000088527.1 ENSMUSG00000088527 ENSMUST00000157902 Gm26086 misc_RNA Interval_8890 chr1 151845918 151846764 + 0 NA Intergenic Intergenic 8614 ENSMUSG00000084557.1 ENSMUSG00000084557 ENSMUST00000122608 Gm25279 snRNA Interval_4671 chr1 75925879 75926277 + 0 NA Intergenic Intergenic 92678 ENSMUSG00000099996.1 ENSMUSG00000099996 ENSMUST00000188786 Gm29065 lincRNA Interval_162072 chr8 124882134 124883055 + 0 NA promoter-TSS (ENSMUSG00000031985.9) protein_coding-promoter-TSS (ENSMUSG00000031985.9) -852 ENSMUSG00000031985.9 ENSMUSG00000031985 ENSMUST00000159864 Gnpat protein_coding Interval_107642 chr3 109166076 109166391 + 0 NA intron (ENSMUSG00000040322.10, intron 9 of 9) protein_coding-intron (ENSMUSG00000040322.10, intron 9 of 9) 26634 ENSMUSG00000083717.1 ENSMUSG00000083717 ENSMUST00000120957 Gm13865 processed_pseudogene Interval_10822 chr1 175613821 175614175 + 0 NA TTS (ENSMUSG00000026526.14) protein_coding-TTS (ENSMUSG00000026526.14) -4285 ENSMUSG00000026526.14 ENSMUSG00000026526 ENSMUST00000154956 Fh1 protein_coding Interval_113459 chr4 55127844 55128077 + 0 NA Intergenic Intergenic 11397 ENSMUSG00000082704.1 ENSMUSG00000082704 ENSMUST00000120116 Gm12515 processed_pseudogene Interval_70551 chr17 11951797 11952544 + 0 NA intron (ENSMUSG00000023826.16, intron 8 of 10) protein_coding-intron (ENSMUSG00000023826.16, intron 9 of 11) -167159 ENSMUSG00000023827.8 ENSMUSG00000023827 ENSMUST00000167905 Agpat4 protein_coding Interval_116981 chr4 118631676 118632475 + 0 NA TTS (ENSMUSG00000085292.1) antisense-TTS (ENSMUSG00000085292.1) 3987 ENSMUSG00000085292.1 ENSMUSG00000085292 ENSMUST00000134971 Gm12853 antisense Interval_106523 chr3 96904673 96905871 + 0 NA promoter-TSS (ENSMUSG00000028096.13) protein_coding-promoter-TSS (ENSMUSG00000028096.13) 579 ENSMUSG00000057123.14 ENSMUSG00000057123 ENSMUST00000072600 Gja5 protein_coding Interval_160177 chr8 106951594 106952656 + 0 NA intron (ENSMUSG00000041308.6, intron 1 of 6) protein_coding-intron (ENSMUSG00000041308.6, intron 1 of 5) 16375 ENSMUSG00000041308.6 ENSMUSG00000041308 ENSMUST00000212298 Sntb2 protein_coding Interval_99092 chr2 157134316 157135601 + 0 NA promoter-TSS (ENSMUSG00000027639.16) protein_coding-promoter-TSS (ENSMUSG00000027639.16) -24346 ENSMUSG00000027639.16 ENSMUSG00000027639 ENSMUST00000152866 Samhd1 protein_coding Interval_137569 chr6 73314903 73315940 + 0 NA Intergenic Intergenic -4780 ENSMUSG00000107931.1 ENSMUSG00000107931 ENSMUST00000204041 Gm44475 processed_pseudogene Interval_13993 chr10 25338810 25340034 + 0 NA Intergenic Intergenic 40813 ENSMUSG00000112352.1 ENSMUSG00000112352 ENSMUST00000218840 Gm40617 antisense Interval_18970 chr10 93485251 93485739 + 0 NA TTS (ENSMUSG00000015889.8) protein_coding-TTS (ENSMUSG00000015889.8) 3024 ENSMUSG00000015889.8 ENSMUSG00000015889 ENSMUST00000217556 Lta4h protein_coding Interval_36793 chr12 54098761 54099058 + 0 NA intron (ENSMUSG00000112549.1, intron 3 of 4) lincRNA-intron (ENSMUSG00000112549.1, intron 3 of 4) 7976 ENSMUSG00000112549.1 ENSMUSG00000112549 ENSMUST00000219480 Gm35818 lincRNA Interval_59033 chr15 41882109 41884192 + 0 NA Intergenic Intergenic -13430 ENSMUSG00000042895.6 ENSMUSG00000042895 ENSMUST00000054742 Abra protein_coding Interval_142627 chr6 144376697 144377664 + 0 NA intron (ENSMUSG00000041540.16, intron 4 of 6) protein_coding-intron (ENSMUSG00000041540.16, intron 4 of 13) -104045 ENSMUSG00000087157.1 ENSMUSG00000087157 ENSMUST00000156443 Sox5os2 antisense Interval_133716 chr6 9531318 9531583 + 0 NA Intergenic Intergenic 384684 ENSMUSG00000107851.1 ENSMUSG00000107851 ENSMUST00000203681 Gm35736 processed_pseudogene Interval_122635 chr5 24367923 24368145 + 0 NA exon (ENSMUSG00000086769.7, exon 4 of 4) antisense-exon (ENSMUSG00000086769.7, exon 4 of 4) 3224 ENSMUSG00000028978.12 ENSMUSG00000028978 ENSMUST00000030834 Nos3 protein_coding Interval_20297 chr10 116715442 116715883 + 0 NA Intergenic Intergenic 13515 ENSMUSG00000100198.1 ENSMUSG00000100198 ENSMUST00000185546 1700030O20Rik lincRNA Interval_2859 chr1 46852670 46854236 + 0 NA intron (ENSMUSG00000025986.6, intron 1 of 1) protein_coding-intron (ENSMUSG00000025986.6, intron 1 of 9) -2974 ENSMUSG00000100213.1 ENSMUSG00000100213 ENSMUST00000189404 Gm28151 lincRNA Interval_168183 chr9 77814983 77815846 + 0 NA Intergenic Intergenic -5621 ENSMUSG00000111253.1 ENSMUSG00000111253 ENSMUST00000217012 Gm34654 lincRNA Interval_172354 chrX 13365437 13365853 + 0 NA Intergenic Intergenic 13033 ENSMUSG00000080818.4 ENSMUSG00000080818 ENSMUST00000118975 Gm9434 processed_pseudogene Interval_64765 chr16 15568817 15570264 + 0 NA intron (ENSMUSG00000022674.15, intron 3 of 3) protein_coding-intron (ENSMUSG00000022674.15, intron 4 of 4) -17825 ENSMUSG00000116386.1 ENSMUSG00000116386 ENSMUST00000229197 Gm49538 processed_pseudogene Interval_87130 chr19 46356305 46358758 + 0 NA intron (ENSMUSG00000025227.14, intron 1 of 2) protein_coding-intron (ENSMUSG00000025227.14, intron 1 of 8) 596 ENSMUSG00000025227.14 ENSMUSG00000025227 ENSMUST00000137143 Mfsd13a protein_coding Interval_50614 chr14 16580604 16580811 + 0 NA TTS (ENSMUSG00000114463.1) antisense-TTS (ENSMUSG00000114463.1) -4880 ENSMUSG00000017491.9 ENSMUSG00000017491 ENSMUST00000225245 Rarb protein_coding Interval_27403 chr11 67373411 67373924 + 0 NA Intergenic Intergenic 8882 ENSMUSG00000060180.12 ENSMUSG00000060180 ENSMUST00000181027 Myh13 protein_coding Interval_168911 chr9 88546079 88546310 + 0 NA Intergenic Intergenic -1891 ENSMUSG00000032425.15 ENSMUSG00000032425 ENSMUST00000161458 Zfp949 protein_coding Interval_126710 chr5 92189749 92189967 + 0 NA intron (ENSMUSG00000029407.10, intron 17 of 21) protein_coding-intron (ENSMUSG00000029407.10, intron 17 of 23) 2059 ENSMUSG00000107354.1 ENSMUSG00000107354 ENSMUST00000202399 Gm43040 TEC Interval_174392 chrX 151095850 151097137 + 0 NA promoter-TSS (ENSMUSG00000025264.12) protein_coding-promoter-TSS (ENSMUSG00000025264.12) 30 ENSMUSG00000025264.12 ENSMUSG00000025264 ENSMUST00000166689 Tsr2 protein_coding Interval_66580 chr16 35302357 35303143 + 0 NA intron (ENSMUSG00000022840.9, intron 20 of 20) protein_coding-intron (ENSMUSG00000022840.9, intron 20 of 20) 17996 ENSMUSG00000116766.1 ENSMUSG00000116766 ENSMUST00000231960 Gm49702 TEC Interval_140574 chr6 119705362 119705667 + 0 NA intron (ENSMUSG00000030172.15, intron 15 of 20) protein_coding-intron (ENSMUSG00000030172.15, intron 14 of 18) -83409 ENSMUSG00000030172.15 ENSMUSG00000030172 ENSMUST00000183741 Erc1 protein_coding Interval_144113 chr7 19480402 19481505 + 0 NA intron (ENSMUSG00000011263.16, intron 6 of 11) protein_coding-intron (ENSMUSG00000011263.16, intron 6 of 11) 12725 ENSMUSG00000109301.1 ENSMUSG00000109301 ENSMUST00000208007 Gm45167 processed_pseudogene Interval_44334 chr13 43784799 43785813 + 0 NA exon (ENSMUSG00000015396.4, exon 1 of 4) protein_coding-exon (ENSMUSG00000015396.4, exon 1 of 4) 121 ENSMUSG00000015396.4 ENSMUSG00000015396 ENSMUST00000221359 Cd83 protein_coding Interval_100997 chr2 174051029 174052198 + 0 NA Intergenic Intergenic -4340 ENSMUSG00000082519.1 ENSMUSG00000082519 ENSMUST00000120334 Vamp7-ps processed_pseudogene Interval_26936 chr11 61687060 61687817 + 0 NA TTS (ENSMUSG00000042377.8) protein_coding-TTS (ENSMUSG00000042377.8) 3019 ENSMUSG00000042377.8 ENSMUSG00000042377 ENSMUST00000093019 Fam83g protein_coding Interval_137153 chr6 68431738 68431924 + 0 NA Intergenic Intergenic -5609 ENSMUSG00000076523.2 ENSMUSG00000076523 ENSMUST00000103324 Igkv15-103 IG_V_gene Interval_64686 chr16 14177205 14178825 + 0 NA intron (ENSMUSG00000022678.16, intron 1 of 3) protein_coding-intron (ENSMUSG00000022678.16, intron 4 of 8) 2888 ENSMUSG00000022678.16 ENSMUSG00000022678 ENSMUST00000149232 Nde1 protein_coding Interval_120788 chr4 150653040 150654107 + 0 NA Intergenic Intergenic -9484 ENSMUSG00000039838.11 ENSMUSG00000039838 ENSMUST00000147706 Slc45a1 protein_coding Interval_170290 chr9 106722338 106722575 + 0 NA intron (ENSMUSG00000040661.6, intron 1 of 1) protein_coding-intron (ENSMUSG00000040661.6, intron 3 of 21) -37154 ENSMUSG00000040813.16 ENSMUSG00000040813 ENSMUST00000185645 Tex264 protein_coding Interval_118788 chr4 133706074 133707583 + 0 NA intron (ENSMUSG00000007880.16, intron 4 of 19) protein_coding-intron (ENSMUSG00000007880.16, intron 4 of 19) 10280 ENSMUSG00000104566.1 ENSMUSG00000104566 ENSMUST00000200408 Mir7227 miRNA Interval_44686 chr13 47152346 47152854 + 0 NA exon (ENSMUSG00000114882.1, exon 1 of 1) TEC-exon (ENSMUSG00000114882.1, exon 1 of 1) 2408 ENSMUSG00000114882.1 ENSMUSG00000114882 ENSMUST00000225219 Gm48581 TEC Interval_168104 chr9 76561673 76561915 + 0 NA intron (ENSMUSG00000032358.12, intron 1 of 4) protein_coding-intron (ENSMUSG00000032358.12, intron 1 of 4) 5322 ENSMUSG00000032358.12 ENSMUSG00000032358 ENSMUST00000098546 Fam83b protein_coding Interval_64446 chr16 11440128 11441184 + 0 NA intron (ENSMUSG00000071669.14, intron 11 of 20) protein_coding-intron (ENSMUSG00000071669.14, intron 4 of 13) 55650 ENSMUSG00000082653.1 ENSMUSG00000082653 ENSMUST00000117770 Gm15897 processed_pseudogene Interval_57912 chr15 25358499 25359056 + 0 NA Intergenic Intergenic -26129 ENSMUSG00000115355.1 ENSMUSG00000115355 ENSMUST00000228450 4930445E18Rik lincRNA Interval_74525 chr17 52879216 52879435 + 0 NA intron (ENSMUSG00000035580.10, intron 8 of 15) protein_coding-intron (ENSMUSG00000035580.10, intron 8 of 15) -70735 ENSMUSG00000035580.10 ENSMUSG00000035580 ENSMUST00000184279 Kcnh8 protein_coding Interval_1341 chr1 20799856 20800083 + 0 NA Intergenic Intergenic 4964 ENSMUSG00000041859.10 ENSMUSG00000041859 ENSMUST00000190421 Mcm3 protein_coding Interval_86568 chr19 41761495 41762587 + 0 NA Intergenic Intergenic 17237 ENSMUSG00000088220.1 ENSMUSG00000088220 ENSMUST00000157595 Gm22601 misc_RNA Interval_172888 chrX 52795933 52796132 + 0 NA intron (ENSMUSG00000073207.1, intron 1 of 1) protein_coding-intron (ENSMUSG00000073207.1, intron 1 of 1) 4832 ENSMUSG00000073207.1 ENSMUSG00000073207 ENSMUST00000101588 Ccdc160 protein_coding Interval_168957 chr9 89682999 89683290 + 0 NA Intergenic Intergenic -14673 ENSMUSG00000111569.1 ENSMUSG00000111569 ENSMUST00000215251 Gm47410 processed_pseudogene Interval_105213 chr3 83898994 83900151 + 0 NA TTS (ENSMUSG00000033767.14) protein_coding-TTS (ENSMUSG00000033767.14) 8007 ENSMUSG00000033767.14 ENSMUSG00000033767 ENSMUST00000192811 Tmem131l protein_coding Interval_32081 chr11 105159407 105160239 + 0 NA Intergenic Intergenic 6797 ENSMUSG00000081965.1 ENSMUSG00000081965 ENSMUST00000118770 Gm11620 processed_pseudogene Interval_38246 chr12 76614931 76616415 + 0 NA intron (ENSMUSG00000021061.15, intron 15 of 31) protein_coding-intron (ENSMUSG00000021061.15, intron 15 of 35) -31587 ENSMUSG00000021061.15 ENSMUSG00000021061 ENSMUST00000166101 Sptb protein_coding Interval_114619 chr4 83254737 83255716 + 0 NA intron (ENSMUSG00000038172.14, intron 6 of 6) protein_coding-intron (ENSMUSG00000038172.14, intron 7 of 15) 29943 ENSMUSG00000038172.14 ENSMUSG00000038172 ENSMUST00000148811 Ttc39b protein_coding Interval_91937 chr2 51791951 51792415 + 0 NA Intergenic Intergenic 26386 ENSMUSG00000081484.1 ENSMUSG00000081484 ENSMUST00000119772 Gm13492 processed_pseudogene Interval_168168 chr9 77729273 77729838 + 0 NA intron (ENSMUSG00000111225.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000111225.1, intron 1 of 1) 724 ENSMUSG00000111225.1 ENSMUSG00000111225 ENSMUST00000215521 Gm47790 lincRNA Interval_169914 chr9 102923603 102925448 + 0 NA Intergenic Intergenic 25970 ENSMUSG00000032547.12 ENSMUSG00000032547 ENSMUST00000177274 Ryk protein_coding Interval_68397 chr16 75736578 75737274 + 0 NA Intergenic Intergenic 9542 ENSMUSG00000080750.2 ENSMUSG00000080750 ENSMUST00000118757 Gm15553 processed_pseudogene Interval_4781 chr1 78598908 78599217 + 0 NA intron (ENSMUSG00000099364.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000099364.1, intron 1 of 1) 10446 ENSMUSG00000099364.1 ENSMUSG00000099364 ENSMUST00000190504 5730419F03Rik lincRNA Interval_66542 chr16 34997524 34997922 + 0 NA TTS (ENSMUSG00000022836.11) protein_coding-TTS (ENSMUSG00000022836.11) 25177 ENSMUSG00000116840.1 ENSMUSG00000116840 ENSMUST00000232358 Gm21691 antisense Interval_153490 chr7 145174318 145174778 + 0 NA Intergenic Intergenic 11552 ENSMUSG00000108967.1 ENSMUSG00000108967 ENSMUST00000207878 Gm45181 lincRNA Interval_155517 chr8 34063358 34064571 + 0 NA Intergenic Intergenic 9342 ENSMUSG00000054618.8 ENSMUSG00000054618 ENSMUST00000149618 Gm9951 lincRNA Interval_118611 chr4 132767715 132769244 + 0 NA promoter-TSS (ENSMUSG00000028884.14) protein_coding-promoter-TSS (ENSMUSG00000028884.14) -6649 ENSMUSG00000028884.14 ENSMUSG00000028884 ENSMUST00000156968 Rpa2 protein_coding Interval_100587 chr2 170282306 170283469 + 0 NA Intergenic Intergenic -2148 ENSMUSG00000084013.1 ENSMUSG00000084013 ENSMUST00000118388 Gm14270 processed_pseudogene Interval_42724 chr13 18591373 18591601 + 0 NA Intergenic Intergenic 53862 ENSMUSG00000114118.1 ENSMUSG00000114118 ENSMUST00000221183 Gm48829 lincRNA Interval_158178 chr8 79559303 79559537 + 0 NA Intergenic Intergenic -8672 ENSMUSG00000097975.1 ENSMUSG00000097975 ENSMUST00000182695 Gm8079 processed_pseudogene Interval_164193 chr9 32368992 32370262 + 0 NA Intergenic Intergenic -15582 ENSMUSG00000041248.9 ENSMUSG00000041248 ENSMUST00000172015 Kcnj1 protein_coding Interval_2107 chr1 36471071 36472293 + 0 NA promoter-TSS (ENSMUSG00000037408.10) protein_coding-promoter-TSS (ENSMUSG00000037408.10) -314 ENSMUSG00000037408.10 ENSMUSG00000037408 ENSMUST00000192530 Cnnm4 protein_coding Interval_57738 chr15 17903136 17903462 + 0 NA Intergenic Intergenic -5602 ENSMUSG00000115173.1 ENSMUSG00000115173 ENSMUST00000228569 Gm2638 processed_pseudogene Interval_144220 chr7 20071182 20071949 + 0 NA intron (ENSMUSG00000060508.16, intron 7 of 7) protein_coding-intron (ENSMUSG00000060508.16, intron 7 of 7) -1212 ENSMUSG00000109103.1 ENSMUSG00000109103 ENSMUST00000207706 Gm18877 processed_pseudogene Interval_120166 chr4 143145409 143145770 + 0 NA intron (ENSMUSG00000057637.13, intron 6 of 9) protein_coding-intron (ENSMUSG00000057637.13, intron 6 of 9) -6983 ENSMUSG00000081838.1 ENSMUSG00000081838 ENSMUST00000119886 Gm13038 processed_pseudogene Interval_173375 chrX 85667266 85667606 + 0 NA Intergenic Intergenic -49002 ENSMUSG00000081933.1 ENSMUSG00000081933 ENSMUST00000121559 Gm14767 processed_pseudogene Interval_114206 chr4 67433057 67433512 + 0 NA Intergenic Intergenic 85648 ENSMUSG00000080815.1 ENSMUSG00000080815 ENSMUST00000117940 Hmgb1-rs18 processed_pseudogene Interval_138939 chr6 93665054 93665870 + 0 NA Intergenic Intergenic -15237 ENSMUSG00000107739.1 ENSMUSG00000107739 ENSMUST00000203479 Gm7812 processed_pseudogene Interval_95113 chr2 103987769 103988184 + 0 NA intron (ENSMUSG00000046085.7, intron 2 of 3) protein_coding-intron (ENSMUSG00000046085.7, intron 2 of 3) 29981 ENSMUSG00000032698.15 ENSMUSG00000032698 ENSMUST00000133210 Lmo2 protein_coding Interval_127086 chr5 100196417 100197499 + 0 NA intron (ENSMUSG00000103927.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000103927.1, intron 1 of 1) 347 ENSMUSG00000103927.1 ENSMUSG00000103927 ENSMUST00000194154 Gm9932 lincRNA Interval_108814 chr3 131801013 131802003 + 0 NA intron (ENSMUSG00000105331.1, intron 1 of 3) lincRNA-intron (ENSMUSG00000105331.1, intron 1 of 3) 41703 ENSMUSG00000105331.1 ENSMUSG00000105331 ENSMUST00000197726 Gm29865 lincRNA Interval_50043 chr13 120168430 120169061 + 0 NA Intergenic Intergenic -3688 ENSMUSG00000095653.2 ENSMUSG00000095653 ENSMUST00000178828 Gm21818 protein_coding Interval_155374 chr8 32861548 32861778 + 0 NA intron (ENSMUSG00000062991.9, intron 1 of 12) protein_coding-intron (ENSMUSG00000062991.9, intron 1 of 8) 80819 ENSMUSG00000079070.10 ENSMUSG00000079070 ENSMUST00000180220 Gm3985 lincRNA Interval_120695 chr4 150147167 150147919 + 0 NA Intergenic Intergenic 7990 ENSMUSG00000028976.10 ENSMUSG00000028976 ENSMUST00000151504 Slc2a5 protein_coding Interval_28218 chr11 74445503 74446290 + 0 NA intron (ENSMUSG00000038807.19, intron 4 of 25) protein_coding-intron (ENSMUSG00000038807.19, intron 4 of 25) 83827 ENSMUSG00000058275.3 ENSMUSG00000058275 ENSMUST00000077794 Olfr412 protein_coding Interval_45513 chr13 55575828 55576387 + 0 NA intron (ENSMUSG00000058569.8, intron 1 of 5) protein_coding-intron (ENSMUSG00000058569.8, intron 1 of 5) -17069 ENSMUSG00000058569.8 ENSMUSG00000058569 ENSMUST00000225888 Tmed9 protein_coding Interval_77448 chr17 88883398 88884801 + 0 NA Intergenic Intergenic -27477 ENSMUSG00000117566.1 ENSMUSG00000117566 ENSMUST00000234561 Gm9407 processed_pseudogene Interval_81495 chr18 61148183 61148830 + 0 NA TTS (ENSMUSG00000024622.8) protein_coding-TTS (ENSMUSG00000024622.8) -9893 ENSMUSG00000089125.1 ENSMUSG00000089125 ENSMUST00000158500 Gm26403 snRNA Interval_20510 chr10 118113401 118114766 + 0 NA intron (ENSMUSG00000112470.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000112470.1, intron 1 of 1) 1566 ENSMUSG00000112470.1 ENSMUSG00000112470 ENSMUST00000218667 5330439M10Rik lincRNA Interval_57815 chr15 21334262 21334616 + 0 NA intron (ENSMUSG00000040452.9, intron 3 of 12) protein_coding-intron (ENSMUSG00000040452.9, intron 2 of 11) 154282 ENSMUSG00000103296.1 ENSMUSG00000103296 ENSMUST00000195204 Gm38234 TEC Interval_66098 chr16 31589318 31590015 + 0 NA TTS (ENSMUSG00000116793.1) lincRNA-TTS (ENSMUSG00000116793.1) 3554 ENSMUSG00000116793.1 ENSMUSG00000116793 ENSMUST00000232216 Gm34256 lincRNA Interval_106605 chr3 97690606 97691308 + 0 NA promoter-TSS (ENSMUSG00000098381.1) miRNA-promoter-TSS (ENSMUSG00000098381.1) -395 ENSMUSG00000098381.1 ENSMUSG00000098381 ENSMUST00000184178 Mir7225 miRNA Interval_117315 chr4 122944468 122944966 + 0 NA Intergenic Intergenic 16435 ENSMUSG00000028655.11 ENSMUSG00000028655 ENSMUST00000127047 Mfsd2a protein_coding Interval_85480 chr19 27316031 27316284 + 0 NA Intergenic Intergenic -6431 ENSMUSG00000047298.3 ENSMUSG00000047298 ENSMUST00000056708 Kcnv2 protein_coding Interval_137038 chr6 66896006 66897427 + 0 NA promoter-TSS (ENSMUSG00000053442.4) processed_transcript-promoter-TSS (ENSMUSG00000053442.4) -175 ENSMUSG00000036402.13 ENSMUSG00000036402 ENSMUST00000204862 Gng12 protein_coding Interval_26042 chr11 53672522 53672937 + 0 NA intron (ENSMUSG00000020380.16, intron 19 of 24) protein_coding-intron (ENSMUSG00000020380.16, intron 19 of 24) 22271 ENSMUSG00000020380.16 ENSMUSG00000020380 ENSMUST00000152598 Rad50 protein_coding Interval_18521 chr10 86889645 86889870 + 0 NA intron (ENSMUSG00000035459.18, intron 1 of 27) protein_coding-intron (ENSMUSG00000035459.18, intron 41 of 68) -4008 ENSMUSG00000035459.18 ENSMUSG00000035459 ENSMUST00000218366 Stab2 protein_coding Interval_62790 chr15 96993414 96993873 + 0 NA Intergenic Intergenic 26308 ENSMUSG00000022464.14 ENSMUSG00000022464 ENSMUST00000230907 Slc38a4 protein_coding Interval_109718 chr3 146267243 146267440 + 0 NA intron (ENSMUSG00000036832.5, intron 2 of 2) protein_coding-intron (ENSMUSG00000036832.5, intron 2 of 2) 46378 ENSMUSG00000036832.5 ENSMUSG00000036832 ENSMUST00000039164 Lpar3 protein_coding Interval_116247 chr4 109043144 109043438 + 0 NA intron (ENSMUSG00000053510.12, intron 1 of 15) protein_coding-intron (ENSMUSG00000053510.12, intron 14 of 30) 19085 ENSMUSG00000053510.12 ENSMUSG00000053510 ENSMUST00000125063 Nrd1 protein_coding Interval_23968 chr11 28987469 28987753 + 0 NA Intergenic Intergenic 30887 ENSMUSG00000081695.1 ENSMUSG00000081695 ENSMUST00000121462 Rpsa-ps5 processed_pseudogene Interval_39678 chr12 92104240 92105518 + 0 NA Intergenic Intergenic 56560 ENSMUSG00000113643.1 ENSMUSG00000113643 ENSMUST00000222953 Gm40598 processed_pseudogene Interval_81400 chr18 60506896 60507790 + 0 NA Intergenic Intergenic -5767 ENSMUSG00000038059.7 ENSMUSG00000038059 ENSMUST00000237270 Smim3 protein_coding Interval_60353 chr15 73135012 73135300 + 0 NA intron (ENSMUSG00000036698.11, intron 3 of 4) protein_coding-intron (ENSMUSG00000036698.11, intron 3 of 18) 42691 ENSMUSG00000036698.11 ENSMUSG00000036698 ENSMUST00000230464 Ago2 protein_coding Interval_57862 chr15 23418428 23419970 + 0 NA intron (ENSMUSG00000040420.15, intron 7 of 8) protein_coding-intron (ENSMUSG00000040420.15, intron 8 of 9) -4742 ENSMUSG00000115560.1 ENSMUSG00000115560 ENSMUST00000226326 Gm49191 antisense Interval_13976 chr10 25224709 25225730 + 0 NA intron (ENSMUSG00000039166.16, intron 6 of 7) protein_coding-intron (ENSMUSG00000039166.16, intron 6 of 7) -4528 ENSMUSG00000039166.16 ENSMUSG00000039166 ENSMUST00000176231 Akap7 protein_coding Interval_22596 chr11 12092597 12092846 + 0 NA Intergenic Intergenic 35277 ENSMUSG00000083527.1 ENSMUSG00000083527 ENSMUST00000121727 Gm12001 processed_pseudogene Interval_116538 chr4 115174971 115175330 + 0 NA promoter-TSS (ENSMUSG00000082889.1) unprocessed_pseudogene-promoter-TSS (ENSMUSG00000082889.1) -648 ENSMUSG00000082889.1 ENSMUSG00000082889 ENSMUST00000120882 Cyp4a29-ps1 unprocessed_pseudogene Interval_101098 chr2 177940315 177940824 + 0 NA intron (ENSMUSG00000078862.10, intron 4 of 4) protein_coding-intron (ENSMUSG00000078862.10, intron 4 of 4) 13115 ENSMUSG00000078862.10 ENSMUSG00000078862 ENSMUST00000108928 Gm14326 protein_coding Interval_164879 chr9 42758331 42759600 + 0 NA intron (ENSMUSG00000032017.14, intron 3 of 20) protein_coding-intron (ENSMUSG00000032017.14, intron 1 of 18) 103164 ENSMUSG00000076355.2 ENSMUSG00000076355 ENSMUST00000102400 Gm27509 miRNA Interval_13230 chr10 13314376 13315058 + 0 NA intron (ENSMUSG00000062866.16, intron 1 of 12) protein_coding-intron (ENSMUSG00000062866.16, intron 1 of 12) 74014 ENSMUSG00000062866.16 ENSMUSG00000062866 ENSMUST00000154265 Phactr2 protein_coding Interval_1087 chr1 15367247 15367630 + 0 NA intron (ENSMUSG00000092083.4, intron 2 of 2) protein_coding-intron (ENSMUSG00000092083.4, intron 1 of 1) 3136 ENSMUSG00000102937.1 ENSMUSG00000102937 ENSMUST00000193873 Gm38116 TEC Interval_59124 chr15 44383242 44383710 + 0 NA intron (ENSMUSG00000038736.10, intron 8 of 9) protein_coding-intron (ENSMUSG00000038736.10, intron 8 of 9) 19391 ENSMUSG00000077181.1 ENSMUSG00000077181 ENSMUST00000103993 Gm25093 snoRNA Interval_164350 chr9 35592356 35593341 + 0 NA intron (ENSMUSG00000074452.13, intron 2 of 4) protein_coding-intron (ENSMUSG00000074452.13, intron 2 of 10) -3498 ENSMUSG00000094676.3 ENSMUSG00000094676 ENSMUST00000184601 Gm10105 processed_pseudogene Interval_172558 chrX 36763586 36764148 + 0 NA intron (ENSMUSG00000037636.6, intron 2 of 2) protein_coding-intron (ENSMUSG00000037636.6, intron 3 of 4) -12752 ENSMUSG00000064530.1 ENSMUSG00000064530 ENSMUST00000082596 Gm23613 snoRNA Interval_59314 chr15 51503157 51503413 + 0 NA Intergenic Intergenic 45685 ENSMUSG00000115513.1 ENSMUSG00000115513 ENSMUST00000228281 Gm2361 processed_pseudogene Interval_73454 chr17 37413351 37414070 + 0 NA exon (ENSMUSG00000092477.1, exon 2 of 3) unprocessed_pseudogene-exon (ENSMUSG00000092477.1, exon 2 of 3) 1413 ENSMUSG00000092477.1 ENSMUSG00000092477 ENSMUST00000173316 Gm18808 unprocessed_pseudogene Interval_126132 chr5 77994543 77995548 + 0 NA Intergenic Intergenic -85585 ENSMUSG00000106960.1 ENSMUSG00000106960 ENSMUST00000202676 Gm42673 processed_pseudogene Interval_79569 chr18 33816328 33816590 + 0 NA intron (ENSMUSG00000024376.7, intron 6 of 7) protein_coding-intron (ENSMUSG00000024376.7, intron 18 of 23) 21295 ENSMUSG00000092819.1 ENSMUSG00000092819 ENSMUST00000175078 Gm23639 snoRNA Interval_148761 chr7 86211348 86211773 + 0 NA exon (ENSMUSG00000091239.2, exon 6 of 6) protein_coding-exon (ENSMUSG00000091239.2, exon 6 of 6) -24964 ENSMUSG00000092419.1 ENSMUSG00000092419 ENSMUST00000174812 Vmn2r-ps86 unprocessed_pseudogene Interval_134001 chr6 17636766 17637775 + 0 NA intron (ENSMUSG00000015733.13, intron 1 of 3) protein_coding-intron (ENSMUSG00000015733.13, intron 1 of 9) 235 ENSMUSG00000015733.13 ENSMUSG00000015733 ENSMUST00000142592 Capza2 protein_coding Interval_74625 chr17 53907164 53907572 + 0 NA Intergenic Intergenic 4951 ENSMUSG00000105921.1 ENSMUSG00000105921 ENSMUST00000196140 Mark4-ps processed_pseudogene Interval_173525 chrX 98545640 98547533 + 0 NA Intergenic Intergenic -1704 ENSMUSG00000083603.1 ENSMUSG00000083603 ENSMUST00000121628 Gm14810 processed_pseudogene Interval_143133 chr7 3578312 3579588 + 0 NA Intergenic Intergenic -10214 ENSMUSG00000095674.1 ENSMUSG00000095674 ENSMUST00000179750 Gm25100 miRNA Interval_27090 chr11 62814694 62814922 + 0 NA Intergenic Intergenic -5632 ENSMUSG00000047821.16 ENSMUSG00000047821 ENSMUST00000128623 Trim16 protein_coding Interval_116514 chr4 114934400 114935087 + 0 NA Intergenic Intergenic -8730 ENSMUSG00000044518.3 ENSMUSG00000044518 ENSMUST00000050940 Foxe3 protein_coding Interval_73100 chr17 34801201 34801873 + 0 NA TTS (ENSMUSG00000092200.2) unprocessed_pseudogene-TTS (ENSMUSG00000092200.2) 1865 ENSMUSG00000024365.9 ENSMUSG00000024365 ENSMUST00000173394 Cyp21a1 protein_coding Interval_6494 chr1 112379859 112380408 + 0 NA Intergenic Intergenic 24722 ENSMUSG00000101054.1 ENSMUSG00000101054 ENSMUST00000185872 Gm18406 processed_pseudogene Interval_166564 chr9 60920445 60922433 + 0 NA intron (ENSMUSG00000111444.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000111444.1, intron 1 of 1) 2216 ENSMUSG00000111444.1 ENSMUSG00000111444 ENSMUST00000216374 Gm47923 lincRNA Interval_141000 chr6 124252064 124252284 + 0 NA exon (ENSMUSG00000107921.1, exon 1 of 1) processed_pseudogene-exon (ENSMUSG00000107921.1, exon 1 of 1) 643 ENSMUSG00000107921.1 ENSMUSG00000107921 ENSMUST00000204315 Gm6423 processed_pseudogene Interval_156270 chr8 46686627 46687635 + 0 NA intron (ENSMUSG00000097534.3, intron 2 of 4) bidirectional_promoter_lncRNA-intron (ENSMUSG00000097534.3, intron 2 of 4) 52377 ENSMUSG00000097534.3 ENSMUSG00000097534 ENSMUST00000181167 Gm16675 bidirectional_promoter_lncRNA Interval_35367 chr12 21089707 21090430 + 0 NA intron (ENSMUSG00000052632.16, intron 6 of 9) protein_coding-intron (ENSMUSG00000052632.16, intron 6 of 9) 47109 ENSMUSG00000092229.3 ENSMUSG00000092229 ENSMUST00000174304 Gm5977 transcribed_unprocessed_pseudogene Interval_143472 chr7 7120737 7121836 + 0 NA promoter-TSS (ENSMUSG00000108959.1) TEC-promoter-TSS (ENSMUSG00000108959.1) 159 ENSMUSG00000062116.10 ENSMUSG00000062116 ENSMUST00000210142 Zfp954 protein_coding Interval_107121 chr3 103722810 103723036 + 0 NA intron (ENSMUSG00000027848.12, intron 2 of 2) protein_coding-intron (ENSMUSG00000027848.12, intron 2 of 2) 9630 ENSMUSG00000027848.12 ENSMUSG00000027848 ENSMUST00000154145 Olfml3 protein_coding Interval_174571 chrX 158939625 158939972 + 0 NA Intergenic Intergenic 106363 ENSMUSG00000082026.1 ENSMUSG00000082026 ENSMUST00000118817 Gm5764 processed_pseudogene Interval_60225 chr15 68413787 68414322 + 0 NA Intergenic Intergenic -50878 ENSMUSG00000093387.1 ENSMUSG00000093387 ENSMUST00000175699 Gm20732 lincRNA Interval_158612 chr8 84752518 84752765 + 0 NA intron (ENSMUSG00000001911.16, intron 2 of 9) protein_coding-intron (ENSMUSG00000001911.16, intron 2 of 8) 29634 ENSMUSG00000074203.4 ENSMUSG00000074203 ENSMUST00000098571 G430095P16Rik protein_coding Interval_49264 chr13 109925668 109926865 + 0 NA promoter-TSS (ENSMUSG00000021699.17) protein_coding-promoter-TSS (ENSMUSG00000021699.17) 22457 ENSMUSG00000084651.1 ENSMUSG00000084651 ENSMUST00000122702 Mir1904 miRNA Interval_32335 chr11 107031677 107031922 + 0 NA Intergenic Intergenic 3576 ENSMUSG00000078607.6 ENSMUSG00000078607 ENSMUST00000106767 1810010H24Rik protein_coding Interval_119652 chr4 139007277 139008179 + 0 NA intron (ENSMUSG00000041143.16, intron 6 of 12) protein_coding-intron (ENSMUSG00000041143.16, intron 6 of 15) 34819 ENSMUSG00000041143.16 ENSMUSG00000041143 ENSMUST00000124835 Tmco4 protein_coding Interval_110236 chr3 154673313 154673895 + 0 NA intron (ENSMUSG00000078161.8, intron 1 of 13) protein_coding-intron (ENSMUSG00000078161.8, intron 1 of 13) 16903 ENSMUSG00000103204.1 ENSMUSG00000103204 ENSMUST00000195806 Gm38139 sense_overlapping Interval_16465 chr10 63014166 63014541 + 0 NA TTS (ENSMUSG00000020069.16) protein_coding-TTS (ENSMUSG00000020069.16) 3731 ENSMUSG00000020069.16 ENSMUSG00000020069 ENSMUST00000119814 Hnrnph3 protein_coding Interval_78693 chr18 17592800 17593003 + 0 NA Intergenic Intergenic -11911 ENSMUSG00000117615.1 ENSMUSG00000117615 ENSMUST00000234987 4930545E07Rik lincRNA Interval_113876 chr4 59523457 59523702 + 0 NA intron (ENSMUSG00000028382.15, intron 2 of 13) protein_coding-intron (ENSMUSG00000028382.15, intron 2 of 13) -9168 ENSMUSG00000080831.1 ENSMUSG00000080831 ENSMUST00000119529 Gm12529 processed_pseudogene Interval_72529 chr17 30510160 30511181 + 0 NA intron (ENSMUSG00000062202.14, intron 6 of 6) protein_coding-intron (ENSMUSG00000062202.14, intron 6 of 11) 14233 ENSMUSG00000062202.14 ENSMUSG00000062202 ENSMUST00000236825 Btbd9 protein_coding Interval_24906 chr11 41089180 41090026 + 0 NA Intergenic Intergenic -52160 ENSMUSG00000084129.1 ENSMUSG00000084129 ENSMUST00000119350 Hmgb1-ps1 processed_pseudogene Interval_173619 chrX 101121216 101121475 + 0 NA intron (ENSMUSG00000046032.16, intron 4 of 5) protein_coding-intron (ENSMUSG00000046032.16, intron 4 of 5) 20207 ENSMUSG00000088114.1 ENSMUSG00000088114 ENSMUST00000157489 Gm24061 snoRNA Interval_155109 chr8 26655828 26656020 + 0 NA Intergenic Intergenic 12382 ENSMUSG00000109680.1 ENSMUSG00000109680 ENSMUST00000211305 Gm32098 lincRNA Interval_75971 chr17 73983034 73983332 + 0 NA Intergenic Intergenic -17677 ENSMUSG00000088060.1 ENSMUSG00000088060 ENSMUST00000157435 Gm24475 snoRNA Interval_46402 chr13 64621196 64621997 + 0 NA intron (ENSMUSG00000113124.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000113124.1, intron 1 of 1) 2046 ENSMUSG00000113124.1 ENSMUSG00000113124 ENSMUST00000222315 Gm47193 lincRNA Interval_70105 chr17 5341627 5342901 + 0 NA exon (ENSMUSG00000069729.14, exon 19 of 19) protein_coding-exon (ENSMUSG00000069729.14, exon 19 of 19) -46499 ENSMUSG00000101133.1 ENSMUSG00000101133 ENSMUST00000190732 Gm29050 antisense Interval_62412 chr15 92186689 92187451 + 0 NA intron (ENSMUSG00000055022.14, intron 1 of 23) protein_coding-intron (ENSMUSG00000055022.14, intron 1 of 23) 135905 ENSMUSG00000055022.14 ENSMUSG00000055022 ENSMUST00000068378 Cntn1 protein_coding Interval_12900 chr10 7883174 7883956 + 0 NA Intergenic Intergenic -35084 ENSMUSG00000088857.1 ENSMUSG00000088857 ENSMUST00000158232 Gm24726 snoRNA Interval_98802 chr2 155097849 155099701 + 0 NA exon (ENSMUSG00000087254.1, exon 3 of 3) lincRNA-exon (ENSMUSG00000087254.1, exon 3 of 3) 1306 ENSMUSG00000087254.1 ENSMUSG00000087254 ENSMUST00000142569 2310005A03Rik lincRNA Interval_83729 chr19 3987973 3989060 + 0 NA TTS (ENSMUSG00000024866.10) protein_coding-TTS (ENSMUSG00000024866.10) 1945 ENSMUSG00000024866.10 ENSMUSG00000024866 ENSMUST00000235592 Acy3 protein_coding Interval_165648 chr9 50670450 50671147 + 0 NA intron (ENSMUSG00000032064.17, intron 11 of 13) protein_coding-intron (ENSMUSG00000032064.17, intron 17 of 19) -20903 ENSMUSG00000000168.9 ENSMUSG00000000168 ENSMUST00000155417 Dlat protein_coding Interval_98203 chr2 149819943 149820723 + 0 NA Intergenic Intergenic -10589 ENSMUSG00000074736.10 ENSMUSG00000074736 ENSMUST00000149705 Syndig1 protein_coding Interval_64332 chr16 10550922 10551648 + 0 NA intron (ENSMUSG00000068663.14, intron 1 of 22) protein_coding-intron (ENSMUSG00000068663.14, intron 1 of 20) 5921 ENSMUSG00000068663.14 ENSMUSG00000068663 ENSMUST00000145866 Clec16a protein_coding Interval_156855 chr8 61233643 61234442 + 0 NA intron (ENSMUSG00000031642.9, intron 2 of 10) protein_coding-intron (ENSMUSG00000031642.9, intron 2 of 11) -39394 ENSMUSG00000086681.1 ENSMUSG00000086681 ENSMUST00000129408 Gm16178 antisense Interval_154818 chr8 23676786 23677308 + 0 NA intron (ENSMUSG00000037492.16, intron 1 of 7) protein_coding-intron (ENSMUSG00000037492.16, intron 1 of 6) 7386 ENSMUSG00000037492.16 ENSMUSG00000037492 ENSMUST00000146774 Zmat4 protein_coding Interval_115985 chr4 106810029 106811198 + 0 NA Intergenic Intergenic -10770 ENSMUSG00000034853.16 ENSMUSG00000034853 ENSMUST00000148688 Acot11 protein_coding Interval_62123 chr15 87475986 87477736 + 0 NA Intergenic Intergenic -67438 ENSMUSG00000054863.9 ENSMUSG00000054863 ENSMUST00000068088 Tafa5 protein_coding Interval_94716 chr2 93647092 93649608 + 0 NA intron (ENSMUSG00000040310.12, intron 1 of 2) protein_coding-intron (ENSMUSG00000040310.12, intron 1 of 3) 5962 ENSMUSG00000040310.12 ENSMUSG00000040310 ENSMUST00000111254 Alx4 protein_coding Interval_168235 chr9 78104202 78104739 + 0 NA intron (ENSMUSG00000001366.14, intron 1 of 12) protein_coding-intron (ENSMUSG00000001366.14, intron 1 of 12) 4117 ENSMUSG00000001366.14 ENSMUSG00000001366 ENSMUST00000162625 Fbxo9 protein_coding Interval_157219 chr8 68085402 68085753 + 0 NA intron (ENSMUSG00000030465.19, intron 2 of 16) protein_coding-intron (ENSMUSG00000030465.19, intron 2 of 16) 75237 ENSMUSG00000077545.1 ENSMUSG00000077545 ENSMUST00000104357 Gm22018 snoRNA Interval_85384 chr19 25383380 25383781 + 0 NA intron (ENSMUSG00000032702.16, intron 4 of 13) protein_coding-intron (ENSMUSG00000032702.16, intron 4 of 13) -36377 ENSMUSG00000118238.1 ENSMUSG00000118238 ENSMUST00000235913 Gm34432 processed_pseudogene Interval_148651 chr7 83842334 83842920 + 0 NA Intergenic Intergenic -8028 ENSMUSG00000109248.1 ENSMUSG00000109248 ENSMUST00000208435 Gm44993 lincRNA Interval_165424 chr9 47734426 47734642 + 0 NA intron (ENSMUSG00000032076.20, intron 1 of 8) protein_coding-intron (ENSMUSG00000032076.20, intron 1 of 8) -36607 ENSMUSG00000110959.1 ENSMUSG00000110959 ENSMUST00000214736 Gm47198 TEC Interval_70209 chr17 6736465 6737595 + 0 NA intron (ENSMUSG00000041831.17, intron 8 of 8) protein_coding-intron (ENSMUSG00000041831.17, intron 15 of 15) 5791 ENSMUSG00000052397.8 ENSMUSG00000052397 ENSMUST00000131131 Ezr protein_coding Interval_33159 chr11 114822679 114824122 + 0 NA Intergenic Intergenic 24476 ENSMUSG00000034677.9 ENSMUSG00000034677 ENSMUST00000106584 Gpr142 protein_coding Interval_4030 chr1 66730125 66731294 + 0 NA intron (ENSMUSG00000026004.15, intron 7 of 13) protein_coding-intron (ENSMUSG00000026004.15, intron 8 of 13) 29802 ENSMUSG00000026005.15 ENSMUSG00000026005 ENSMUST00000190404 Rpe protein_coding Interval_45205 chr13 53183147 53184892 + 0 NA intron (ENSMUSG00000021464.14, intron 1 of 8) protein_coding-intron (ENSMUSG00000021464.14, intron 1 of 8) 91639 ENSMUSG00000021464.14 ENSMUSG00000021464 ENSMUST00000149299 Ror2 protein_coding Interval_110399 chr3 157751138 157751555 + 0 NA Intergenic Intergenic -24938 ENSMUSG00000106632.1 ENSMUSG00000106632 ENSMUST00000199819 Gm33466 lincRNA Interval_67124 chr16 43618329 43619517 + 0 NA exon (ENSMUSG00000022708.16, exon 9 of 9) protein_coding-exon (ENSMUSG00000022708.16, exon 9 of 9) -21732 ENSMUSG00000076372.2 ENSMUSG00000076372 ENSMUST00000102417 Mir568 miRNA Interval_119371 chr4 137287827 137288654 + 0 NA intron (ENSMUSG00000036856.4, intron 1 of 4) protein_coding-intron (ENSMUSG00000036856.4, intron 1 of 4) 10751 ENSMUSG00000036856.4 ENSMUSG00000036856 ENSMUST00000045747 Wnt4 protein_coding Interval_148307 chr7 80401785 80403467 + 0 NA promoter-TSS (ENSMUSG00000030530.15) protein_coding-promoter-TSS (ENSMUSG00000030530.15) -49 ENSMUSG00000030530.15 ENSMUSG00000030530 ENSMUST00000147150 Furin protein_coding Interval_72285 chr17 28980244 28981811 + 0 NA promoter-TSS (ENSMUSG00000024006.17) protein_coding-promoter-TSS (ENSMUSG00000024006.17) 9121 ENSMUSG00000084632.1 ENSMUSG00000084632 ENSMUST00000122683 Gm23887 snRNA Interval_48536 chr13 99925075 99925554 + 0 NA Intergenic Intergenic -24223 ENSMUSG00000021647.7 ENSMUSG00000021647 ENSMUST00000224142 Cartpt protein_coding Interval_119585 chr4 138504769 138505849 + 0 NA Intergenic Intergenic 50995 ENSMUSG00000046447.3 ENSMUSG00000046447 ENSMUST00000050918 Camk2n1 protein_coding Interval_125983 chr5 76539978 76541055 + 0 NA TTS (ENSMUSG00000036435.13) protein_coding-TTS (ENSMUSG00000036435.13) -12130 ENSMUSG00000036435.13 ENSMUSG00000036435 ENSMUST00000143736 Exoc1 protein_coding Interval_62869 chr15 97592664 97595844 + 0 NA Intergenic Intergenic -35964 ENSMUSG00000116131.1 ENSMUSG00000116131 ENSMUST00000230522 Gm49506 processed_pseudogene Interval_25357 chr11 46642114 46642432 + 0 NA intron (ENSMUSG00000086909.1, intron 1 of 4) lincRNA-intron (ENSMUSG00000086909.1, intron 1 of 4) 2733 ENSMUSG00000086909.1 ENSMUSG00000086909 ENSMUST00000132691 Gm4926 lincRNA Interval_57549 chr15 12267645 12268454 + 0 NA intron (ENSMUSG00000039458.15, intron 15 of 15) protein_coding-intron (ENSMUSG00000039458.15, intron 15 of 15) -18620 ENSMUSG00000115594.1 ENSMUSG00000115594 ENSMUST00000227442 Gm46497 processed_pseudogene Interval_26425 chr11 57777737 57779575 + 0 NA intron (ENSMUSG00000020520.14, intron 8 of 11) protein_coding-intron (ENSMUSG00000020520.14, intron 8 of 11) 14229 ENSMUSG00000065806.1 ENSMUSG00000065806 ENSMUST00000083872 n-R5s69 rRNA Interval_99944 chr2 166035729 166036177 + 0 NA intron (ENSMUSG00000027678.17, intron 2 of 22) protein_coding-intron (ENSMUSG00000027678.17, intron 2 of 22) -11965 ENSMUSG00000027678.17 ENSMUSG00000027678 ENSMUST00000139394 Ncoa3 protein_coding Interval_9762 chr1 161928783 161929187 + 0 NA Intergenic Intergenic 36838 ENSMUSG00000103158.5 ENSMUSG00000103158 ENSMUST00000194266 Gm31925 lincRNA Interval_77530 chr17 90881089 90881264 + 0 NA intron (ENSMUSG00000024109.18, intron 1 of 12) protein_coding-intron (ENSMUSG00000024109.18, intron 4 of 20) 20007 ENSMUSG00000090160.1 ENSMUSG00000090160 ENSMUST00000162121 4930480K15Rik antisense Interval_41379 chr12 113176819 113177961 + 0 NA Intergenic Intergenic -4084 ENSMUSG00000105111.1 ENSMUSG00000105111 ENSMUST00000198975 Gm43310 processed_pseudogene Interval_42021 chr13 6586155 6586344 + 0 NA exon (ENSMUSG00000021196.14, exon 3 of 3) protein_coding-exon (ENSMUSG00000021196.14, exon 3 of 3) 11630 ENSMUSG00000021196.14 ENSMUSG00000021196 ENSMUST00000136585 Pfkp protein_coding Interval_21714 chr11 3879493 3880339 + 0 NA Intergenic Intergenic 6961 ENSMUSG00000084077.1 ENSMUSG00000084077 ENSMUST00000121172 Gm11952 processed_pseudogene Interval_167832 chr9 72938824 72939025 + 0 NA intron (ENSMUSG00000034910.5, intron 1 of 2) protein_coding-intron (ENSMUSG00000034910.5, intron 1 of 2) 13279 ENSMUSG00000034910.5 ENSMUSG00000034910 ENSMUST00000038489 Pygo1 protein_coding Interval_160513 chr8 110183572 110184192 + 0 NA Intergenic Intergenic -15672 ENSMUSG00000003657.9 ENSMUSG00000003657 ENSMUST00000003754 Calb2 protein_coding Interval_102813 chr3 31308804 31310624 + 0 NA intron (ENSMUSG00000085953.2, intron 1 of 3) protein_coding-intron (ENSMUSG00000069072.9, intron 1 of 7) -1209 ENSMUSG00000085953.2 ENSMUSG00000085953 ENSMUST00000195091 Gm15496 antisense Interval_22711 chr11 13685166 13685516 + 0 NA Intergenic Intergenic -476738 ENSMUSG00000081631.1 ENSMUSG00000081631 ENSMUST00000121451 Gm12005 processed_pseudogene Interval_135786 chr6 47318805 47320238 + 0 NA Intergenic Intergenic 113568 ENSMUSG00000107853.1 ENSMUSG00000107853 ENSMUST00000203098 Gm18584 processed_pseudogene Interval_80781 chr18 47020631 47021120 + 0 NA intron (ENSMUSG00000042705.9, intron 5 of 6) protein_coding-intron (ENSMUSG00000042705.9, intron 5 of 6) -35394 ENSMUSG00000087857.1 ENSMUSG00000087857 ENSMUST00000157232 Gm22791 snoRNA Interval_19631 chr10 106410963 106411430 + 0 NA Intergenic Intergenic -33201 ENSMUSG00000112066.1 ENSMUSG00000112066 ENSMUST00000217782 Gm48380 processed_pseudogene Interval_93324 chr2 71935807 71936036 + 0 NA Intergenic Intergenic -20132 ENSMUSG00000087345.1 ENSMUSG00000087345 ENSMUST00000133981 Gm13746 lincRNA Interval_60613 chr15 75689930 75690534 + 0 NA Intergenic Intergenic -20507 ENSMUSG00000022580.13 ENSMUSG00000022580 ENSMUST00000229670 Rhpn1 protein_coding Interval_142262 chr6 140209605 140210296 + 0 NA Intergenic Intergenic -43305 ENSMUSG00000089558.1 ENSMUSG00000089558 ENSMUST00000158933 Gm24174 rRNA Interval_109954 chr3 152147255 152147597 + 0 NA promoter-TSS (ENSMUSG00000039131.15) protein_coding-promoter-TSS (ENSMUSG00000039131.15) -638 ENSMUSG00000039131.15 ENSMUSG00000039131 ENSMUST00000133102 Gipc2 protein_coding Interval_152321 chr7 131733633 131733906 + 0 NA intron (ENSMUSG00000030849.18, intron 2 of 6) protein_coding-intron (ENSMUSG00000030849.18, intron 2 of 6) 52810 ENSMUSG00000108839.1 ENSMUSG00000108839 ENSMUST00000207793 Gm44547 TEC Interval_170657 chr9 109930926 109932407 + 0 NA promoter-TSS (ENSMUSG00000032479.15) protein_coding-promoter-TSS (ENSMUSG00000032479.15) -6916 ENSMUSG00000105191.1 ENSMUSG00000105191 ENSMUST00000197587 Gm4644 processed_pseudogene Interval_16956 chr10 70131820 70134033 + 0 NA intron (ENSMUSG00000048701.13, intron 1 of 8) protein_coding-intron (ENSMUSG00000048701.13, intron 1 of 8) -42085 ENSMUSG00000048701.13 ENSMUSG00000048701 ENSMUST00000135607 Ccdc6 protein_coding Interval_143997 chr7 18863876 18864895 + 0 NA TTS (ENSMUSG00000040987.15) protein_coding-TTS (ENSMUSG00000040987.15) -6985 ENSMUSG00000030413.7 ENSMUSG00000030413 ENSMUST00000206481 Pglyrp1 protein_coding Interval_2623 chr1 42543112 42543319 + 0 NA Intergenic Intergenic 51402 ENSMUSG00000103106.1 ENSMUSG00000103106 ENSMUST00000191992 Gm37047 TEC Interval_166872 chr9 63533151 63533566 + 0 NA intron (ENSMUSG00000086539.8, intron 1 of 1) processed_transcript-intron (ENSMUSG00000086539.8, intron 1 of 1) 69059 ENSMUSG00000037801.13 ENSMUSG00000037801 ENSMUST00000170960 Iqch protein_coding Interval_52374 chr14 45465749 45466583 + 0 NA intron (ENSMUSG00000037712.16, intron 10 of 14) protein_coding-intron (ENSMUSG00000037712.16, intron 10 of 14) -4521 ENSMUSG00000088769.1 ENSMUSG00000088769 ENSMUST00000158144 Gm22637 misc_RNA Interval_11176 chr1 179856832 179857159 + 0 NA Intergenic Intergenic 53619 ENSMUSG00000073486.2 ENSMUSG00000073486 ENSMUST00000097454 Gm10518 antisense Interval_25759 chr11 51551489 51551680 + 0 NA intron (ENSMUSG00000063564.13, intron 7 of 28) protein_coding-intron (ENSMUSG00000063564.13, intron 7 of 28) -22848 ENSMUSG00000063564.13 ENSMUSG00000063564 ENSMUST00000151098 Col23a1 protein_coding Interval_138896 chr6 93140599 93140925 + 0 NA intron (ENSMUSG00000097462.7, intron 2 of 9) antisense-intron (ENSMUSG00000097462.7, intron 2 of 9) -2772 ENSMUSG00000097996.1 ENSMUSG00000097996 ENSMUST00000182893 Gm5313 processed_pseudogene Interval_158561 chr8 84480227 84480424 + 0 NA intron (ENSMUSG00000034656.18, intron 5 of 48) protein_coding-intron (ENSMUSG00000034656.18, intron 3 of 46) -99744 ENSMUSG00000064392.1 ENSMUSG00000064392 ENSMUST00000082458 Gm23626 snoRNA Interval_70792 chr17 14578682 14578946 + 0 NA Intergenic Intergenic 92052 ENSMUSG00000023885.9 ENSMUSG00000023885 ENSMUST00000232616 Thbs2 protein_coding Interval_161453 chr8 120532621 120533121 + 0 NA intron (ENSMUSG00000031822.20, intron 1 of 15) protein_coding-intron (ENSMUSG00000031822.20, intron 1 of 15) 4855 ENSMUSG00000102737.1 ENSMUSG00000102737 ENSMUST00000192004 1700016A09Rik TEC Interval_131694 chr5 139338018 139338910 + 0 NA intron (ENSMUSG00000045438.12, intron 1 of 1) protein_coding-intron (ENSMUSG00000045438.12, intron 2 of 2) 12954 ENSMUSG00000045438.12 ENSMUSG00000045438 ENSMUST00000148000 Cox19 protein_coding Interval_162381 chr8 127602718 127603965 + 0 NA intron (ENSMUSG00000025812.18, intron 24 of 24) protein_coding-intron (ENSMUSG00000025812.18, intron 23 of 23) 5635 ENSMUSG00000088580.1 ENSMUSG00000088580 ENSMUST00000157955 Gm22968 rRNA Interval_47959 chr13 94646286 94649130 + 0 NA promoter-TSS (ENSMUSG00000113598.1) lincRNA-promoter-TSS (ENSMUSG00000113598.1) -364 ENSMUSG00000113598.1 ENSMUSG00000113598 ENSMUST00000221068 Gm48287 lincRNA Interval_166716 chr9 62229686 62229909 + 0 NA Intergenic Intergenic -11873 ENSMUSG00000110826.1 ENSMUSG00000110826 ENSMUST00000217557 Gm47262 lincRNA Interval_152749 chr7 137178610 137178874 + 0 NA Intergenic Intergenic 10922 ENSMUSG00000110174.1 ENSMUSG00000110174 ENSMUST00000211656 Gm45499 processed_pseudogene Interval_105481 chr3 86919404 86921061 + 0 NA promoter-TSS (ENSMUSG00000028078.14) protein_coding-promoter-TSS (ENSMUSG00000028078.14) 103 ENSMUSG00000028078.14 ENSMUSG00000028078 ENSMUST00000194452 Dclk2 protein_coding Interval_139894 chr6 112484459 112484723 + 0 NA intron (ENSMUSG00000049112.9, intron 1 of 1) protein_coding-intron (ENSMUSG00000049112.9, intron 1 of 1) 3803 ENSMUSG00000049112.9 ENSMUSG00000049112 ENSMUST00000204027 Oxtr protein_coding Interval_33686 chr11 117919166 117919473 + 0 NA Intergenic Intergenic -2586 ENSMUSG00000082562.1 ENSMUSG00000082562 ENSMUST00000121028 Gm11726 processed_pseudogene Interval_126891 chr5 96783478 96784184 + 0 NA exon (ENSMUSG00000034687.8, exon 74 of 74) protein_coding-exon (ENSMUSG00000034687.8, exon 74 of 74) -9610 ENSMUSG00000029484.12 ENSMUSG00000029484 ENSMUST00000196126 Anxa3 protein_coding Interval_126282 chr5 86041969 86042239 + 0 NA intron (ENSMUSG00000029253.12, intron 7 of 18) protein_coding-intron (ENSMUSG00000029253.12, intron 7 of 18) 23447 ENSMUSG00000029253.12 ENSMUSG00000029253 ENSMUST00000199141 Cenpc1 protein_coding Interval_24121 chr11 30543817 30544143 + 0 NA intron (ENSMUSG00000060923.5, intron 3 of 3) protein_coding-intron (ENSMUSG00000060923.5, intron 3 of 3) 15685 ENSMUSG00000081712.1 ENSMUSG00000081712 ENSMUST00000121149 Gm12096 processed_pseudogene Interval_134867 chr6 32836913 32838657 + 0 NA intron (ENSMUSG00000053768.13, intron 3 of 4) protein_coding-intron (ENSMUSG00000053768.13, intron 6 of 7) 59286 ENSMUSG00000053768.13 ENSMUSG00000053768 ENSMUST00000115091 Chchd3 protein_coding Interval_36782 chr12 53900923 53901197 + 0 NA intron (ENSMUSG00000021010.9, intron 4 of 10) protein_coding-intron (ENSMUSG00000021010.9, intron 5 of 11) 178332 ENSMUSG00000099407.1 ENSMUSG00000099407 ENSMUST00000185390 1700060O08Rik antisense Interval_14553 chr10 35433524 35433940 + 0 NA Intergenic Intergenic 51664 ENSMUSG00000111753.1 ENSMUSG00000111753 ENSMUST00000214107 1700054O05Rik lincRNA Interval_167620 chr9 71195908 71197269 + 0 NA intron (ENSMUSG00000111429.1, intron 5 of 5) antisense-intron (ENSMUSG00000111429.1, intron 2 of 2) -19201 ENSMUSG00000013584.5 ENSMUSG00000013584 ENSMUST00000034723 Aldh1a2 protein_coding Interval_170168 chr9 105838283 105839531 + 0 NA Intergenic Intergenic -10822 ENSMUSG00000043719.14 ENSMUSG00000043719 ENSMUST00000060896 Col6a6 protein_coding Interval_62138 chr15 87898764 87899249 + 0 NA Intergenic Intergenic -68410 ENSMUSG00000116061.1 ENSMUSG00000116061 ENSMUST00000229118 Gm49472 lincRNA Interval_160726 chr8 111845268 111845654 + 0 NA intron (ENSMUSG00000031954.6, intron 1 of 6) protein_coding-intron (ENSMUSG00000031954.6, intron 1 of 6) 8830 ENSMUSG00000031954.6 ENSMUSG00000031954 ENSMUST00000034432 Cfdp1 protein_coding Interval_99305 chr2 158815568 158816045 + 0 NA intron (ENSMUSG00000027655.14, intron 5 of 6) protein_coding-intron (ENSMUSG00000027655.14, intron 5 of 20) -11612 ENSMUSG00000027655.14 ENSMUSG00000027655 ENSMUST00000143195 Dhx35 protein_coding Interval_32068 chr11 105021012 105021573 + 0 NA intron (ENSMUSG00000040838.10, intron 148 of 187) protein_coding-intron (ENSMUSG00000040838.10, intron 148 of 187) -9865 ENSMUSG00000082767.1 ENSMUSG00000082767 ENSMUST00000120525 Gm11622 processed_pseudogene Interval_168015 chr9 75423598 75423862 + 0 NA Intergenic Intergenic 13546 ENSMUSG00000097021.7 ENSMUSG00000097021 ENSMUST00000180533 4933433G15Rik lincRNA Interval_67464 chr16 49021591 49021778 + 0 NA Intergenic Intergenic 5847 ENSMUSG00000033031.13 ENSMUSG00000033031 ENSMUST00000149004 Cip2a protein_coding Interval_149579 chr7 99815967 99816208 + 0 NA intron (ENSMUSG00000035239.6, intron 2 of 2) protein_coding-intron (ENSMUSG00000035239.6, intron 2 of 2) 12330 ENSMUSG00000035239.6 ENSMUSG00000035239 ENSMUST00000036331 Neu3 protein_coding Interval_112215 chr4 36008164 36008668 + 0 NA intron (ENSMUSG00000045083.14, intron 1 of 2) protein_coding-intron (ENSMUSG00000045083.14, intron 2 of 2) -4237 ENSMUSG00000082169.1 ENSMUSG00000082169 ENSMUST00000121343 Gm12369 processed_pseudogene Interval_90775 chr2 32555192 32556084 + 0 NA intron (ENSMUSG00000039157.12, intron 1 of 3) protein_coding-intron (ENSMUSG00000039157.12, intron 1 of 10) 15448 ENSMUSG00000039157.12 ENSMUSG00000039157 ENSMUST00000147723 Fam102a protein_coding Interval_76989 chr17 85409356 85409548 + 0 NA intron (ENSMUSG00000071037.6, intron 7 of 10) protein_coding-intron (ENSMUSG00000071037.6, intron 7 of 10) -89181 ENSMUSG00000097803.1 ENSMUSG00000097803 ENSMUST00000181130 Rpl31-ps16 processed_pseudogene Interval_28037 chr11 72398079 72398516 + 0 NA intron (ENSMUSG00000045667.14, intron 7 of 7) protein_coding-intron (ENSMUSG00000045667.14, intron 7 of 7) 4444 ENSMUSG00000045667.14 ENSMUSG00000045667 ENSMUST00000143345 Smtnl2 protein_coding Interval_158202 chr8 79741100 79742370 + 0 NA intron (ENSMUSG00000036977.8, intron 4 of 4) protein_coding-intron (ENSMUSG00000036977.8, intron 4 of 4) 10678 ENSMUSG00000110202.1 ENSMUSG00000110202 ENSMUST00000211147 Gm45435 antisense Interval_122051 chr5 14656073 14656291 + 0 NA intron (ENSMUSG00000061601.15, intron 3 of 22) protein_coding-intron (ENSMUSG00000061601.15, intron 3 of 24) -9467 ENSMUSG00000105578.1 ENSMUSG00000105578 ENSMUST00000198643 Gm43663 TEC Interval_99329 chr2 159086640 159087575 + 0 NA Intergenic Intergenic 17244 ENSMUSG00000104628.1 ENSMUSG00000104628 ENSMUST00000196974 Gm44319 miRNA Interval_13344 chr10 16062815 16063042 + 0 NA Intergenic Intergenic 271151 ENSMUSG00000112227.1 ENSMUSG00000112227 ENSMUST00000218833 C330004P14Rik lincRNA Interval_141983 chr6 136347594 136347812 + 0 NA Intergenic Intergenic 19173 ENSMUSG00000094973.2 ENSMUSG00000094973 ENSMUST00000077886 Eif4a3l1 protein_coding Interval_119358 chr4 137133660 137133972 + 0 NA Intergenic Intergenic -15673 ENSMUSG00000087417.1 ENSMUSG00000087417 ENSMUST00000154285 Gm13001 lincRNA Interval_48672 chr13 101048828 101050026 + 0 NA Intergenic Intergenic -10181 ENSMUSG00000096722.2 ENSMUSG00000096722 ENSMUST00000179479 Hmgb1-ps9 processed_pseudogene Interval_125785 chr5 74150988 74152124 + 0 NA Intergenic Intergenic 24494 ENSMUSG00000106735.1 ENSMUSG00000106735 ENSMUST00000200757 A330058E17Rik TEC Interval_14231 chr10 29236071 29236609 + 0 NA Intergenic Intergenic 24645 ENSMUSG00000004360.9 ENSMUSG00000004360 ENSMUST00000213489 9330159F19Rik protein_coding Interval_135010 chr6 34545047 34545529 + 0 NA Intergenic Intergenic 11735 ENSMUSG00000085187.1 ENSMUSG00000085187 ENSMUST00000125185 Gm13860 lincRNA Interval_53508 chr14 57919831 57921967 + 0 NA promoter-TSS (ENSMUSG00000021973.9) protein_coding-promoter-TSS (ENSMUSG00000021973.9) -967 ENSMUSG00000021973.9 ENSMUSG00000021973 ENSMUST00000225116 Micu2 protein_coding Interval_105001 chr3 79615504 79615753 + 0 NA TTS (ENSMUSG00000027809.14) protein_coding-TTS (ENSMUSG00000027809.14) -3802 ENSMUSG00000102370.1 ENSMUSG00000102370 ENSMUST00000195767 Gm37973 TEC Interval_10731 chr1 173723541 173724224 + 0 NA intron (ENSMUSG00000073490.11, intron 7 of 7) protein_coding-intron (ENSMUSG00000073490.11, intron 7 of 7) -8222 ENSMUSG00000103051.1 ENSMUSG00000103051 ENSMUST00000195346 Gm7871 unprocessed_pseudogene Interval_129627 chr5 121414480 121414734 + 0 NA intron (ENSMUSG00000042719.17, intron 5 of 20) protein_coding-intron (ENSMUSG00000042719.17, intron 6 of 23) 11949 ENSMUSG00000106115.1 ENSMUSG00000106115 ENSMUST00000198012 Gm43420 TEC Interval_132189 chr5 143218757 143220264 + 0 NA intron (ENSMUSG00000039296.15, intron 4 of 6) protein_coding-intron (ENSMUSG00000039296.15, intron 4 of 6) 7354 ENSMUSG00000039296.15 ENSMUSG00000039296 ENSMUST00000160502 Spdye4a protein_coding Interval_127534 chr5 104880198 104880396 + 0 NA Intergenic Intergenic -20504 ENSMUSG00000072774.10 ENSMUSG00000072774 ENSMUST00000191135 Zfp951 protein_coding Interval_66165 chr16 32070046 32070286 + 0 NA intron (ENSMUSG00000022781.8, intron 1 of 14) protein_coding-intron (ENSMUSG00000022781.8, intron 1 of 14) 4256 ENSMUSG00000077460.1 ENSMUSG00000077460 ENSMUST00000104272 Gm26419 snoRNA Interval_87910 chr19 57058991 57059523 + 0 NA intron (ENSMUSG00000025085.16, intron 9 of 20) protein_coding-intron (ENSMUSG00000025085.16, intron 14 of 25) -122019 ENSMUSG00000025083.18 ENSMUSG00000025083 ENSMUST00000132851 Afap1l2 protein_coding Interval_158804 chr8 86774692 86776369 + 0 NA Intergenic Intergenic -29596 ENSMUSG00000036840.5 ENSMUSG00000036840 ENSMUST00000045296 Siah1a protein_coding Interval_41080 chr12 111059816 111060026 + 0 NA intron (ENSMUSG00000037896.17, intron 2 of 11) protein_coding-intron (ENSMUSG00000037896.17, intron 2 of 11) 8107 ENSMUSG00000114110.1 ENSMUSG00000114110 ENSMUST00000222551 Gm46379 processed_pseudogene Interval_55065 chr14 77632303 77632888 + 0 NA exon (ENSMUSG00000022012.9, exon 11 of 17) protein_coding-exon (ENSMUSG00000022012.9, exon 11 of 17) 1265 ENSMUSG00000115363.1 ENSMUSG00000115363 ENSMUST00000227098 Gm49003 antisense Interval_103048 chr3 34727820 34728130 + 0 NA Intergenic Intergenic -11313 ENSMUSG00000105153.4 ENSMUSG00000105153 ENSMUST00000198364 Gm3143 lincRNA Interval_82592 chr18 75344347 75345736 + 0 NA Intergenic Intergenic 22047 ENSMUSG00000092569.1 ENSMUSG00000092569 ENSMUST00000174338 Gm20544 processed_transcript Interval_13334 chr10 15470261 15470536 + 0 NA Intergenic Intergenic 51006 ENSMUSG00000112395.1 ENSMUSG00000112395 ENSMUST00000219635 Gm7198 processed_pseudogene Interval_142184 chr6 137948479 137948761 + 0 NA Intergenic Intergenic -28649 ENSMUSG00000094466.1 ENSMUSG00000094466 ENSMUST00000177773 Gm24308 miRNA Interval_18569 chr10 87925842 87927920 + 0 NA intron (ENSMUSG00000020053.18, intron 4 of 4) protein_coding-intron (ENSMUSG00000020053.18, intron 3 of 3) -39966 ENSMUSG00000112222.1 ENSMUSG00000112222 ENSMUST00000219550 Tyms-ps processed_pseudogene Interval_32043 chr11 104657813 104659105 + 0 NA intron (ENSMUSG00000020689.4, intron 6 of 10) protein_coding-intron (ENSMUSG00000020689.4, intron 10 of 14) 21070 ENSMUSG00000020689.4 ENSMUSG00000020689 ENSMUST00000127140 Itgb3 protein_coding Interval_66833 chr16 37967213 37968357 + 0 NA intron (ENSMUSG00000046961.8, intron 3 of 9) protein_coding-intron (ENSMUSG00000046961.8, intron 3 of 9) -12302 ENSMUSG00000065188.1 ENSMUSG00000065188 ENSMUST00000083254 Gm25140 snRNA Interval_36566 chr12 50402513 50403335 + 0 NA intron (ENSMUSG00000002688.8, intron 5 of 18) protein_coding-intron (ENSMUSG00000002688.8, intron 5 of 18) 246174 ENSMUSG00000002688.8 ENSMUSG00000002688 ENSMUST00000002765 Prkd1 protein_coding Interval_150845 chr7 115568567 115569437 + 0 NA intron (ENSMUSG00000051910.13, intron 3 of 6) protein_coding-intron (ENSMUSG00000051910.13, intron 10 of 16) 277149 ENSMUSG00000051910.13 ENSMUSG00000051910 ENSMUST00000206912 Sox6 protein_coding Interval_84703 chr19 15617412 15617949 + 0 NA Intergenic Intergenic -62324 ENSMUSG00000094850.1 ENSMUSG00000094850 ENSMUST00000083389 Gm24319 snRNA Interval_74400 chr17 49939149 49939425 + 0 NA intron (ENSMUSG00000118549.1, intron 10 of 10) unprocessed_pseudogene-intron (ENSMUSG00000118549.1, intron 10 of 10) 11648 ENSMUSG00000118549.1 ENSMUSG00000118549 ENSMUST00000239022 AC114824.1 unprocessed_pseudogene Interval_141595 chr6 130262869 130263445 + 0 NA Intergenic Intergenic 18771 ENSMUSG00000072718.6 ENSMUSG00000072718 ENSMUST00000112020 Klra10 protein_coding Interval_9261 chr1 155612216 155612687 + 0 NA intron (ENSMUSG00000033701.13, intron 4 of 7) protein_coding-intron (ENSMUSG00000033701.13, intron 4 of 7) 49334 ENSMUSG00000033701.13 ENSMUSG00000033701 ENSMUST00000192730 Acbd6 protein_coding Interval_125788 chr5 74161240 74162110 + 0 NA Intergenic Intergenic 14375 ENSMUSG00000106735.1 ENSMUSG00000106735 ENSMUST00000200757 A330058E17Rik TEC Interval_147276 chr7 65422243 65422663 + 0 NA intron (ENSMUSG00000030516.14, intron 2 of 4) protein_coding-intron (ENSMUSG00000030516.14, intron 2 of 4) 20606 ENSMUSG00000108541.1 ENSMUSG00000108541 ENSMUST00000205496 Gm44795 processed_pseudogene Interval_165061 chr9 44211508 44211827 + 0 NA intron (ENSMUSG00000034342.9, intron 1 of 15) protein_coding-intron (ENSMUSG00000034342.9, intron 1 of 14) 22382 ENSMUSG00000034342.9 ENSMUSG00000034342 ENSMUST00000205755 Cbl protein_coding Interval_157756 chr8 72765454 72766905 + 0 NA exon (ENSMUSG00000110481.1, exon 1 of 1) TEC-exon (ENSMUSG00000110481.1, exon 1 of 1) 698 ENSMUSG00000110481.1 ENSMUSG00000110481 ENSMUST00000211831 Gm45705 TEC Interval_134728 chr6 31007207 31007484 + 0 NA Intergenic Intergenic -48267 ENSMUSG00000073209.4 ENSMUSG00000073209 ENSMUST00000101589 Klf14 protein_coding Interval_158652 chr8 84968641 84970011 + 0 NA promoter-TSS (ENSMUSG00000005161.15) protein_coding-promoter-TSS (ENSMUSG00000005161.15) 107 ENSMUSG00000111184.1 ENSMUSG00000111184 ENSMUST00000214133 Gm49661 protein_coding Interval_62128 chr15 87604023 87604887 + 0 NA intron (ENSMUSG00000054863.9, intron 1 of 3) protein_coding-intron (ENSMUSG00000054863.9, intron 1 of 3) 60156 ENSMUSG00000054863.9 ENSMUSG00000054863 ENSMUST00000068088 Tafa5 protein_coding Interval_21876 chr11 4894662 4895833 + 0 NA promoter-TSS (ENSMUSG00000034274.11) protein_coding-promoter-TSS (ENSMUSG00000034274.11) 3902 ENSMUSG00000098296.1 ENSMUSG00000098296 ENSMUST00000183479 Mir6918 miRNA Interval_135564 chr6 40465911 40466245 + 0 NA exon (ENSMUSG00000037159.11, exon 12 of 12) protein_coding-exon (ENSMUSG00000037159.11, exon 12 of 12) -5375 ENSMUSG00000029911.14 ENSMUSG00000029911 ENSMUST00000141801 Ssbp1 protein_coding Interval_48278 chr13 97616964 97617879 + 0 NA Intergenic Intergenic 7885 ENSMUSG00000114599.1 ENSMUSG00000114599 ENSMUST00000225459 Gm48070 processed_pseudogene Interval_110225 chr3 154577551 154579076 + 0 NA exon (ENSMUSG00000047583.9, exon 6 of 6) protein_coding-exon (ENSMUSG00000047583.9, exon 6 of 6) 18785 ENSMUSG00000047583.9 ENSMUSG00000047583 ENSMUST00000122976 Tyw3 protein_coding Interval_79201 chr18 25607821 25608259 + 0 NA intron (ENSMUSG00000024268.16, intron 2 of 5) protein_coding-intron (ENSMUSG00000024268.16, intron 2 of 12) -9586 ENSMUSG00000084537.1 ENSMUSG00000084537 ENSMUST00000122588 Gm25845 misc_RNA Interval_77484 chr17 89840196 89840734 + 0 NA Intergenic Intergenic 69984 ENSMUSG00000066878.5 ENSMUSG00000066878 ENSMUST00000086423 Gm10184 protein_coding Interval_152287 chr7 131397380 131397618 + 0 NA exon (ENSMUSG00000109570.1, exon 1 of 1) TEC-exon (ENSMUSG00000109570.1, exon 1 of 1) 1241 ENSMUSG00000109570.1 ENSMUSG00000109570 ENSMUST00000208700 Gm44624 TEC Interval_25044 chr11 43484367 43485159 + 0 NA intron (ENSMUSG00000046491.10, intron 1 of 2) protein_coding-intron (ENSMUSG00000046491.10, intron 2 of 3) 10487 ENSMUSG00000046491.10 ENSMUSG00000046491 ENSMUST00000151912 C1qtnf2 protein_coding Interval_137871 chr6 83065990 83066951 + 0 NA exon (ENSMUSG00000009145.6, exon 12 of 12) protein_coding-exon (ENSMUSG00000009145.6, exon 12 of 12) 3755 ENSMUSG00000068327.5 ENSMUSG00000068327 ENSMUST00000089641 Tlx2 protein_coding Interval_29981 chr11 88524868 88525414 + 0 NA intron (ENSMUSG00000069769.13, intron 1 of 5) protein_coding-intron (ENSMUSG00000069769.13, intron 6 of 13) 65006 ENSMUSG00000069769.13 ENSMUSG00000069769 ENSMUST00000126293 Msi2 protein_coding Interval_142250 chr6 139938853 139939607 + 0 NA intron (ENSMUSG00000030228.18, intron 19 of 20) protein_coding-intron (ENSMUSG00000030228.18, intron 14 of 15) 94302 ENSMUSG00000108251.1 ENSMUSG00000108251 ENSMUST00000204787 Gm44112 processed_pseudogene Interval_5389 chr1 88432515 88434279 + 0 NA Intergenic Intergenic 25991 ENSMUSG00000026295.12 ENSMUSG00000026295 ENSMUST00000189225 Spp2 protein_coding Interval_116882 chr4 117950239 117950799 + 0 NA intron (ENSMUSG00000028538.12, intron 5 of 5) protein_coding-intron (ENSMUSG00000028538.12, intron 9 of 11) -21106 ENSMUSG00000028539.14 ENSMUSG00000028539 ENSMUST00000150612 Artn protein_coding Interval_112561 chr4 43161405 43162478 + 0 NA intron (ENSMUSG00000028456.18, intron 8 of 39) protein_coding-intron (ENSMUSG00000028456.18, intron 7 of 38) -25313 ENSMUSG00000077552.1 ENSMUSG00000077552 ENSMUST00000104364 Gm23709 snoRNA Interval_45167 chr13 52908573 52909082 + 0 NA TTS (ENSMUSG00000021460.17) protein_coding-TTS (ENSMUSG00000021460.17) 4119 ENSMUSG00000021460.17 ENSMUSG00000021460 ENSMUST00000151469 Auh protein_coding Interval_8223 chr1 136592370 136593084 + 0 NA Intergenic Intergenic 12741 ENSMUSG00000104366.1 ENSMUSG00000104366 ENSMUST00000193674 4933409D19Rik lincRNA Interval_170193 chr9 106106143 106106568 + 0 NA Intergenic Intergenic 10881 ENSMUSG00000103434.1 ENSMUSG00000103434 ENSMUST00000192983 Gm36993 TEC Interval_21199 chr10 127176953 127178929 + 0 NA promoter-TSS (ENSMUSG00000040441.12) protein_coding-promoter-TSS (ENSMUSG00000040441.12) -2828 ENSMUSG00000040441.12 ENSMUSG00000040441 ENSMUST00000220327 Slc26a10 protein_coding Interval_82008 chr18 67132668 67134293 + 0 NA promoter-TSS (ENSMUSG00000024524.17) protein_coding-promoter-TSS (ENSMUSG00000024524.17) 10748 ENSMUSG00000117982.1 ENSMUSG00000117982 ENSMUST00000236854 Gm50170 TEC Interval_92933 chr2 68782029 68782757 + 0 NA Intergenic Intergenic -48624 ENSMUSG00000082836.1 ENSMUSG00000082836 ENSMUST00000119276 Gm13612 processed_pseudogene Interval_20709 chr10 120413658 120415066 + 0 NA intron (ENSMUSG00000056758.14, intron 3 of 5) protein_coding-intron (ENSMUSG00000056758.14, intron 3 of 4) 24839 ENSMUSG00000090191.1 ENSMUSG00000090191 ENSMUST00000161291 9230105E05Rik antisense Interval_135707 chr6 43828994 43830604 + 0 NA Intergenic Intergenic 27105 ENSMUSG00000107920.1 ENSMUSG00000107920 ENSMUST00000204795 Gm7783 processed_pseudogene Interval_160793 chr8 112347834 112348907 + 0 NA Intergenic Intergenic -111404 ENSMUSG00000110435.1 ENSMUSG00000110435 ENSMUST00000212314 Gm3635 processed_pseudogene Interval_108709 chr3 130589129 130589849 + 0 NA exon (ENSMUSG00000058897.18, exon 36 of 38) protein_coding-exon (ENSMUSG00000058897.18, exon 36 of 38) -2632 ENSMUSG00000105520.1 ENSMUSG00000105520 ENSMUST00000197071 Gm42837 TEC Interval_147039 chr7 59124885 59125722 + 0 NA Intergenic Intergenic 15383 ENSMUSG00000108902.1 ENSMUSG00000108902 ENSMUST00000207227 Gm9377 processed_pseudogene Interval_109269 chr3 138515717 138515948 + 0 NA Intergenic Intergenic -10589 ENSMUSG00000088373.3 ENSMUSG00000088373 ENSMUST00000157748 Mir1956 miRNA Interval_17514 chr10 77440864 77441613 + 0 NA Intergenic Intergenic -16679 ENSMUSG00000112818.1 ENSMUSG00000112818 ENSMUST00000218522 Gm35920 lincRNA Interval_164985 chr9 43661405 43662123 + 0 NA Intergenic Intergenic -16607 ENSMUSG00000111400.1 ENSMUSG00000111400 ENSMUST00000214692 Gm29961 lincRNA Interval_127410 chr5 103778394 103779179 + 0 NA intron (ENSMUSG00000029313.18, intron 1 of 12) protein_coding-intron (ENSMUSG00000029313.18, intron 1 of 19) 24222 ENSMUSG00000029313.18 ENSMUSG00000029313 ENSMUST00000152145 Aff1 protein_coding Interval_63498 chr15 101472951 101473609 + 0 NA promoter-TSS (ENSMUSG00000067614.5) protein_coding-promoter-TSS (ENSMUSG00000067614.5) -198 ENSMUSG00000067614.5 ENSMUSG00000067614 ENSMUST00000088049 Krt86 protein_coding Interval_61259 chr15 80297332 80298236 + 0 NA intron (ENSMUSG00000022416.15, intron 1 of 36) protein_coding-intron (ENSMUSG00000022416.15, intron 1 of 36) -33538 ENSMUSG00000051518.8 ENSMUSG00000051518 ENSMUST00000229962 Rps19bp1 protein_coding Interval_97829 chr2 144310060 144311999 + 0 NA intron (ENSMUSG00000037279.13, intron 3 of 3) protein_coding-intron (ENSMUSG00000037279.13, intron 3 of 3) 20297 ENSMUSG00000037279.13 ENSMUSG00000037279 ENSMUST00000138582 Ovol2 protein_coding Interval_162788 chr9 9126471 9126688 + 0 NA intron (ENSMUSG00000050730.17, intron 3 of 5) protein_coding-intron (ENSMUSG00000050730.17, intron 3 of 22) -109709 ENSMUSG00000085253.3 ENSMUSG00000085253 ENSMUST00000150263 Gm16833 antisense Interval_116397 chr4 111468307 111468969 + 0 NA intron (ENSMUSG00000061298.14, intron 2 of 6) protein_coding-intron (ENSMUSG00000061298.14, intron 6 of 12) 35441 ENSMUSG00000028545.13 ENSMUSG00000028545 ENSMUST00000123667 Bend5 protein_coding Interval_86919 chr19 44882169 44883209 + 0 NA Intergenic Intergenic 31680 ENSMUSG00000117967.1 ENSMUSG00000117967 ENSMUST00000236477 Gm5246 processed_pseudogene Interval_25960 chr11 53145875 53146989 + 0 NA intron (ENSMUSG00000036264.9, intron 7 of 15) protein_coding-intron (ENSMUSG00000036264.9, intron 7 of 15) -26376 ENSMUSG00000087668.1 ENSMUSG00000087668 ENSMUST00000137096 Gm11186 antisense Interval_28150 chr11 73222678 73224433 + 0 NA exon (ENSMUSG00000005951.13, exon 7 of 7) protein_coding-exon (ENSMUSG00000005951.13, exon 7 of 7) 2711 ENSMUSG00000082405.1 ENSMUSG00000082405 ENSMUST00000121176 Gm16021 processed_pseudogene Interval_123052 chr5 29269480 29270003 + 0 NA intron (ENSMUSG00000010721.15, intron 8 of 14) protein_coding-intron (ENSMUSG00000010721.15, intron 9 of 16) 10556 ENSMUSG00000105741.1 ENSMUSG00000105741 ENSMUST00000199610 C79130 TEC Interval_25344 chr11 46544498 46545139 + 0 NA intron (ENSMUSG00000086981.2, intron 1 of 3) lincRNA-intron (ENSMUSG00000086981.2, intron 1 of 3) -3595 ENSMUSG00000086981.2 ENSMUSG00000086981 ENSMUST00000169764 Gm12171 lincRNA Interval_20922 chr10 122038557 122039329 + 0 NA intron (ENSMUSG00000020121.15, intron 1 of 3) protein_coding-intron (ENSMUSG00000020121.15, intron 1 of 21) 8372 ENSMUSG00000020121.15 ENSMUSG00000020121 ENSMUST00000162710 Srgap1 protein_coding Interval_12613 chr10 3916874 3917221 + 0 NA intron (ENSMUSG00000040624.18, intron 3 of 15) protein_coding-intron (ENSMUSG00000040624.18, intron 3 of 15) 17830 ENSMUSG00000089392.1 ENSMUSG00000089392 ENSMUST00000158767 Gm23023 rRNA Interval_90875 chr2 33137167 33137518 + 0 NA exon (ENSMUSG00000038831.16, exon 17 of 17) protein_coding-exon (ENSMUSG00000038831.16, exon 17 of 17) 20828 ENSMUSG00000038831.16 ENSMUSG00000038831 ENSMUST00000113164 Ralgps1 protein_coding Interval_74561 chr17 53435335 53435525 + 0 NA intron (ENSMUSG00000023931.5, intron 3 of 8) protein_coding-intron (ENSMUSG00000023931.5, intron 6 of 12) 27876 ENSMUSG00000023931.5 ENSMUSG00000023931 ENSMUST00000233544 Efhb protein_coding Interval_93708 chr2 76020597 76022571 + 0 NA intron (ENSMUSG00000075270.11, intron 18 of 19) protein_coding-intron (ENSMUSG00000075270.11, intron 18 of 19) -39617 ENSMUSG00000075271.4 ENSMUSG00000075271 ENSMUST00000099994 Ttc30a1 protein_coding Interval_44904 chr13 49621449 49622072 + 0 NA intron (ENSMUSG00000021390.6, intron 6 of 6) protein_coding-intron (ENSMUSG00000021391.10, intron 5 of 7) 13714 ENSMUSG00000021390.6 ENSMUSG00000021390 ENSMUST00000021822 Ogn protein_coding Interval_17308 chr10 75757628 75758008 + 0 NA intron (ENSMUSG00000020196.10, intron 1 of 36) protein_coding-intron (ENSMUSG00000020196.10, intron 1 of 36) -9343 ENSMUSG00000112789.1 ENSMUSG00000112789 ENSMUST00000219818 Gm19326 processed_pseudogene Interval_125174 chr5 65091411 65092609 + 0 NA promoter-TSS (ENSMUSG00000037913.12) protein_coding-promoter-TSS (ENSMUSG00000037913.12) 122 ENSMUSG00000037913.12 ENSMUSG00000037913 ENSMUST00000203117 Tmem156 protein_coding Interval_77291 chr17 87834270 87835833 + 0 NA intron (ENSMUSG00000117466.1, intron 2 of 2) lincRNA-intron (ENSMUSG00000117466.1, intron 1 of 1) 9978 ENSMUSG00000117466.1 ENSMUSG00000117466 ENSMUST00000234350 Gm50039 lincRNA Interval_100156 chr2 167378382 167379556 + 0 NA Intergenic Intergenic -65114 ENSMUSG00000017929.13 ENSMUSG00000017929 ENSMUST00000133557 B4galt5 protein_coding Interval_84643 chr19 14614894 14615871 + 0 NA Intergenic Intergenic -19843 ENSMUSG00000024642.17 ENSMUSG00000024642 ENSMUST00000235975 Tle4 protein_coding Interval_717 chr1 10127869 10128240 + 0 NA intron (ENSMUSG00000056763.16, intron 6 of 9) protein_coding-intron (ENSMUSG00000056763.16, intron 25 of 29) 13647 ENSMUSG00000067851.11 ENSMUSG00000067851 ENSMUST00000186720 Arfgef1 protein_coding Interval_94060 chr2 83259287 83259466 + 0 NA Intergenic Intergenic 94573 ENSMUSG00000081400.1 ENSMUSG00000081400 ENSMUST00000119790 Gm13680 processed_pseudogene Interval_164592 chr9 39634111 39634449 + 0 NA Intergenic Intergenic -10805 ENSMUSG00000059106.5 ENSMUSG00000059106 ENSMUST00000076548 Olfr961 protein_coding Interval_162983 chr9 14173409 14174839 + 0 NA Intergenic Intergenic -29959 ENSMUSG00000111803.1 ENSMUSG00000111803 ENSMUST00000216569 Gm47564 lincRNA Interval_140607 chr6 120037038 120039940 + 0 NA promoter-TSS (ENSMUSG00000045962.16) protein_coding-promoter-TSS (ENSMUSG00000045962.16) -4178 ENSMUSG00000076217.1 ENSMUSG00000076217 ENSMUST00000102262 Mir706 miRNA Interval_4312 chr1 72635181 72635646 + 0 NA Intergenic Intergenic -5775 ENSMUSG00000110712.1 ENSMUSG00000110712 ENSMUST00000211909 Gm39662 antisense Interval_55011 chr14 76874963 76876256 + 0 NA TTS (ENSMUSG00000115596.1) lincRNA-TTS (ENSMUSG00000115596.1) 14038 ENSMUSG00000115596.1 ENSMUSG00000115596 ENSMUST00000227341 Gm48969 lincRNA Interval_160407 chr8 109058919 109059313 + 0 NA Intergenic Intergenic -16129 ENSMUSG00000097393.8 ENSMUSG00000097393 ENSMUST00000181098 D030068K23Rik lincRNA Interval_36449 chr12 44848727 44849395 + 0 NA Intergenic Intergenic -74119 ENSMUSG00000081636.2 ENSMUSG00000081636 ENSMUST00000117663 Gm15901 processed_pseudogene Interval_59992 chr15 63424979 63425822 + 0 NA intron (ENSMUSG00000115520.2, intron 2 of 5) lincRNA-intron (ENSMUSG00000115520.2, intron 2 of 5) 55876 ENSMUSG00000095939.1 ENSMUSG00000095939 ENSMUST00000158203 Gm25702 snRNA Interval_63442 chr15 101118363 101119078 + 0 NA intron (ENSMUSG00000047034.10, intron 4 of 4) protein_coding-intron (ENSMUSG00000047034.10, intron 3 of 3) 2271 ENSMUSG00000047034.10 ENSMUSG00000047034 ENSMUST00000231208 Ankrd33 protein_coding Interval_25836 chr11 52055844 52056138 + 0 NA intron (ENSMUSG00000020389.19, intron 5 of 5) protein_coding-intron (ENSMUSG00000020389.19, intron 13 of 13) -16520 ENSMUSG00000084800.1 ENSMUSG00000084800 ENSMUST00000133940 Gm12205 antisense Interval_64422 chr16 11260196 11261077 + 0 NA Intergenic Intergenic -6191 ENSMUSG00000088544.1 ENSMUSG00000088544 ENSMUST00000157919 Mir1945 miRNA Interval_54757 chr14 74783132 74783827 + 0 NA intron (ENSMUSG00000068015.8, intron 17 of 18) protein_coding-intron (ENSMUSG00000068015.8, intron 18 of 19) 11826 ENSMUSG00000068015.8 ENSMUSG00000068015 ENSMUST00000227433 Lrch1 protein_coding Interval_157881 chr8 75184443 75185211 + 0 NA Intergenic Intergenic 8369 ENSMUSG00000110693.1 ENSMUSG00000110693 ENSMUST00000212196 Gm45899 lincRNA Interval_48068 chr13 95738102 95738360 + 0 NA intron (ENSMUSG00000118436.1, intron 2 of 3) protein_coding-intron (ENSMUSG00000021676.10, intron 5 of 35) 1648 ENSMUSG00000118436.1 ENSMUSG00000118436 ENSMUST00000238548 Gm32880 antisense Interval_1109 chr1 15791071 15792394 + 0 NA Intergenic Intergenic -15909 ENSMUSG00000025925.14 ENSMUSG00000025925 ENSMUST00000188684 Terf1 protein_coding Interval_135700 chr6 43654998 43655667 + 0 NA intron (ENSMUSG00000029735.17, intron 2 of 3) protein_coding-intron (ENSMUSG00000029735.17, intron 2 of 8) -29366 ENSMUSG00000029735.17 ENSMUSG00000029735 ENSMUST00000114643 Tpk1 protein_coding Interval_138134 chr6 85386455 85386855 + 0 NA Intergenic Intergenic -37413 ENSMUSG00000068302.8 ENSMUSG00000068302 ENSMUST00000174469 Noto protein_coding Interval_133488 chr6 5707374 5708652 + 0 NA Intergenic Intergenic -49406 ENSMUSG00000029757.16 ENSMUSG00000029757 ENSMUST00000203520 Dync1i1 protein_coding Interval_111794 chr4 29246516 29246697 + 0 NA Intergenic Intergenic 51086 ENSMUSG00000082486.1 ENSMUSG00000082486 ENSMUST00000117609 Gm11919 processed_pseudogene Interval_163680 chr9 24159804 24161090 + 0 NA intron (ENSMUSG00000043659.11, intron 3 of 5) protein_coding-intron (ENSMUSG00000043659.11, intron 3 of 9) -68545 ENSMUSG00000111135.1 ENSMUSG00000111135 ENSMUST00000213615 Gm47670 processed_pseudogene Interval_103578 chr3 50255405 50255664 + 0 NA TTS (ENSMUSG00000102167.1) processed_pseudogene-TTS (ENSMUSG00000102167.1) 679 ENSMUSG00000102167.1 ENSMUSG00000102167 ENSMUST00000193451 Gm2345 processed_pseudogene Interval_6104 chr1 97018771 97019200 + 0 NA Intergenic Intergenic -5696 ENSMUSG00000044757.7 ENSMUSG00000044757 ENSMUST00000054664 Gm6430 processed_pseudogene Interval_71103 chr17 18076278 18076872 + 0 NA exon (ENSMUSG00000094396.3, exon 6 of 6) protein_coding-exon (ENSMUSG00000094396.3, exon 6 of 6) -8441 ENSMUSG00000091206.2 ENSMUSG00000091206 ENSMUST00000172359 Vmn2r91 protein_coding Interval_70306 chr17 8386418 8386923 + 0 NA intron (ENSMUSG00000058159.14, intron 2 of 9) processed_transcript-intron (ENSMUSG00000117569.1, intron 2 of 5) -2010 ENSMUSG00000116704.1 ENSMUSG00000116704 ENSMUST00000231828 Gm5491 processed_pseudogene Interval_15076 chr10 42366802 42367060 + 0 NA intron (ENSMUSG00000038302.14, intron 2 of 7) protein_coding-intron (ENSMUSG00000038302.14, intron 7 of 12) -35668 ENSMUSG00000081873.1 ENSMUSG00000081873 ENSMUST00000120526 Gm15197 processed_pseudogene Interval_18420 chr10 85658483 85658721 + 0 NA TTS (ENSMUSG00000020042.15) protein_coding-TTS (ENSMUSG00000020042.15) 13399 ENSMUSG00000020042.15 ENSMUSG00000020042 ENSMUST00000145433 Btbd11 protein_coding Interval_38258 chr12 76709367 76710922 + 0 NA promoter-TSS (ENSMUSG00000021061.15) protein_coding-promoter-TSS (ENSMUSG00000021061.15) 18164 ENSMUSG00000088356.1 ENSMUSG00000088356 ENSMUST00000157731 Gm24010 misc_RNA Interval_55438 chr14 87281070 87281382 + 0 NA Intergenic Intergenic -65019 ENSMUSG00000088536.1 ENSMUSG00000088536 ENSMUST00000157911 Gm23278 snoRNA Interval_130213 chr5 124986211 124986645 + 0 NA Intergenic Intergenic -17047 ENSMUSG00000037962.7 ENSMUSG00000037962 ENSMUST00000145946 Rflna protein_coding Interval_144608 chr7 27071704 27072065 + 0 NA Intergenic Intergenic 4428 ENSMUSG00000108682.1 ENSMUSG00000108682 ENSMUST00000206269 Gm29754 processed_pseudogene Interval_28730 chr11 77967070 77967475 + 0 NA intron (ENSMUSG00000000632.13, intron 4 of 15) protein_coding-intron (ENSMUSG00000000632.13, intron 4 of 15) 36233 ENSMUSG00000000632.13 ENSMUSG00000000632 ENSMUST00000126866 Sez6 protein_coding Interval_112802 chr4 45095964 45096231 + 0 NA Intergenic Intergenic 12017 ENSMUSG00000078713.8 ENSMUSG00000078713 ENSMUST00000107807 Tomm5 protein_coding Interval_174441 chrX 152307542 152308169 + 0 NA intron (ENSMUSG00000087403.9, intron 2 of 2) protein_coding-intron (ENSMUSG00000087403.9, intron 2 of 2) 3854 ENSMUSG00000084584.1 ENSMUSG00000084584 ENSMUST00000122635 n-R5s15 rRNA Interval_62337 chr15 90433367 90434217 + 0 NA Intergenic Intergenic 80086 ENSMUSG00000116204.1 ENSMUSG00000116204 ENSMUST00000229899 Gm36480 lincRNA Interval_66244 chr16 32566832 32568028 + 0 NA Intergenic Intergenic 15688 ENSMUSG00000116957.1 ENSMUSG00000116957 ENSMUST00000232103 Gm34680 lincRNA Interval_73688 chr17 42822848 42823204 + 0 NA intron (ENSMUSG00000061665.7, intron 7 of 15) protein_coding-intron (ENSMUSG00000061665.7, intron 9 of 17) 8004 ENSMUSG00000061665.7 ENSMUSG00000061665 ENSMUST00000233626 Cd2ap protein_coding Interval_6741 chr1 119106367 119106735 + 0 NA Intergenic Intergenic 48082 ENSMUSG00000097408.1 ENSMUSG00000097408 ENSMUST00000181458 Gm26831 lincRNA Interval_138887 chr6 92943039 92944092 + 0 NA promoter-TSS (ENSMUSG00000030022.14) protein_coding-promoter-TSS (ENSMUSG00000030022.14) 2987 ENSMUSG00000097462.7 ENSMUSG00000097462 ENSMUST00000204609 9530026P05Rik antisense Interval_166081 chr9 56490901 56491199 + 0 NA TTS (ENSMUSG00000032329.4) protein_coding-TTS (ENSMUSG00000032329.4) 15611 ENSMUSG00000111343.1 ENSMUSG00000111343 ENSMUST00000216940 Gm47175 TEC Interval_71515 chr17 24243705 24244055 + 0 NA intron (ENSMUSG00000072082.7, intron 3 of 8) protein_coding-intron (ENSMUSG00000072082.7, intron 3 of 16) -2933 ENSMUSG00000099123.1 ENSMUSG00000099123 ENSMUST00000184733 Mir6965 miRNA Interval_17934 chr10 80892163 80893029 + 0 NA intron (ENSMUSG00000059406.8, intron 12 of 18) protein_coding-intron (ENSMUSG00000059406.8, intron 11 of 17) 8189 ENSMUSG00000020219.7 ENSMUSG00000020219 ENSMUST00000218149 Timm13 protein_coding Interval_107961 chr3 117574821 117576348 + 0 NA exon (ENSMUSG00000033342.15, exon 1 of 6) protein_coding-exon (ENSMUSG00000033342.15, exon 1 of 6) 90500 ENSMUSG00000033342.15 ENSMUSG00000033342 ENSMUST00000106473 Plppr5 protein_coding Interval_38419 chr12 78910841 78912400 + 0 NA Intergenic Intergenic -4656 ENSMUSG00000021118.7 ENSMUSG00000021118 ENSMUST00000021544 Plek2 protein_coding Interval_52819 chr14 50862262 50862883 + 0 NA intron (ENSMUSG00000006281.8, intron 6 of 54) protein_coding-intron (ENSMUSG00000006281.8, intron 6 of 54) -7812 ENSMUSG00000097431.2 ENSMUSG00000097431 ENSMUST00000228254 Gm26782 antisense Interval_9043 chr1 153260039 153260436 + 0 NA intron (ENSMUSG00000026478.14, intron 2 of 27) protein_coding-intron (ENSMUSG00000026478.14, intron 2 of 27) -20911 ENSMUSG00000026478.14 ENSMUSG00000026478 ENSMUST00000159251 Lamc1 protein_coding Interval_37574 chr12 69973757 69974147 + 0 NA intron (ENSMUSG00000021067.8, intron 1 of 2) protein_coding-intron (ENSMUSG00000021067.8, intron 3 of 4) 3566 ENSMUSG00000113898.1 ENSMUSG00000113898 ENSMUST00000221921 Gm19144 processed_pseudogene Interval_167260 chr9 66826133 66826449 + 0 NA intron (ENSMUSG00000053040.13, intron 4 of 5) protein_coding-intron (ENSMUSG00000053040.13, intron 4 of 5) -8408 ENSMUSG00000091745.1 ENSMUSG00000091745 ENSMUST00000166507 Gm17098 antisense Interval_49804 chr13 115925547 115925938 + 0 NA Intergenic Intergenic 154806 ENSMUSG00000114324.1 ENSMUSG00000114324 ENSMUST00000224201 Gm18135 processed_pseudogene Interval_25117 chr11 44260911 44262362 + 0 NA Intergenic Intergenic 5573 ENSMUSG00000086738.1 ENSMUSG00000086738 ENSMUST00000145584 Gm12154 lincRNA Interval_145425 chr7 34685109 34686047 + 0 NA intron (ENSMUSG00000060402.8, intron 1 of 2) protein_coding-intron (ENSMUSG00000060402.8, intron 2 of 3) -11579 ENSMUSG00000087127.1 ENSMUSG00000087127 ENSMUST00000126294 Gm12756 lincRNA Interval_90942 chr2 33629946 33630369 + 0 NA intron (ENSMUSG00000038765.14, intron 2 of 7) protein_coding-intron (ENSMUSG00000038765.14, intron 2 of 7) 10354 ENSMUSG00000038765.14 ENSMUSG00000038765 ENSMUST00000137559 Lmx1b protein_coding Interval_87479 chr19 52819638 52820642 + 0 NA Intergenic Intergenic -103102 ENSMUSG00000117896.1 ENSMUSG00000117896 ENSMUST00000237126 AA387883 lincRNA Interval_58237 chr15 31284369 31284941 + 0 NA Intergenic Intergenic 2566 ENSMUSG00000115418.1 ENSMUSG00000115418 ENSMUST00000228063 Gm49296 TEC Interval_151671 chr7 125932290 125932534 + 0 NA intron (ENSMUSG00000046182.8, intron 3 of 6) protein_coding-intron (ENSMUSG00000046182.8, intron 3 of 6) 132035 ENSMUSG00000108376.1 ENSMUSG00000108376 ENSMUST00000206586 Gm44874 TEC Interval_27186 chr11 63924571 63925643 + 0 NA Intergenic Intergenic -2817 ENSMUSG00000070407.5 ENSMUSG00000070407 ENSMUST00000094103 Hs3st3b1 protein_coding Interval_35144 chr12 17551782 17553357 + 0 NA Intergenic Intergenic 6423 ENSMUSG00000064427.1 ENSMUSG00000064427 ENSMUST00000082493 Gm22748 snoRNA Interval_39227 chr12 86037462 86038096 + 0 NA intron (ENSMUSG00000012609.19, intron 6 of 7) protein_coding-intron (ENSMUSG00000012609.19, intron 33 of 33) -31394 ENSMUSG00000103301.1 ENSMUSG00000103301 ENSMUST00000192206 Gm37804 TEC Interval_3499 chr1 59049940 59050188 + 0 NA TTS (ENSMUSG00000072295.7) protein_coding-TTS (ENSMUSG00000072295.7) 14009 ENSMUSG00000099752.1 ENSMUSG00000099752 ENSMUST00000191356 Gm29018 antisense Interval_38689 chr12 81034787 81036098 + 0 NA intron (ENSMUSG00000021136.13, intron 1 of 11) protein_coding-intron (ENSMUSG00000021136.13, intron 1 of 12) 8614 ENSMUSG00000021136.13 ENSMUSG00000021136 ENSMUST00000129362 Smoc1 protein_coding Interval_167793 chr9 72735678 72736441 + 0 NA intron (ENSMUSG00000032216.15, intron 20 of 29) protein_coding-intron (ENSMUSG00000032216.15, intron 19 of 28) 7919 ENSMUSG00000102411.1 ENSMUSG00000102411 ENSMUST00000194508 Gm36936 TEC Interval_170020 chr9 103702301 103703413 + 0 NA intron (ENSMUSG00000042757.16, intron 2 of 3) protein_coding-intron (ENSMUSG00000042757.16, intron 2 of 5) 58972 ENSMUSG00000042757.16 ENSMUSG00000042757 ENSMUST00000186455 Tmem108 protein_coding Interval_125981 chr5 76528939 76529896 + 0 NA promoter-TSS (ENSMUSG00000036435.13) protein_coding-promoter-TSS (ENSMUSG00000036435.13) -23229 ENSMUSG00000036435.13 ENSMUSG00000036435 ENSMUST00000143736 Exoc1 protein_coding Interval_57872 chr15 24182283 24182648 + 0 NA Intergenic Intergenic 23105 ENSMUSG00000115528.1 ENSMUSG00000115528 ENSMUST00000228146 Gm8408 processed_pseudogene Interval_84331 chr19 10164051 10164524 + 0 NA Intergenic Intergenic 11874 ENSMUSG00000117700.1 ENSMUSG00000117700 ENSMUST00000235345 Gm50359 processed_pseudogene Interval_126551 chr5 90200050 90200585 + 0 NA Intergenic Intergenic 15705 ENSMUSG00000035505.14 ENSMUSG00000035505 ENSMUST00000148480 Cox18 protein_coding Interval_30617 chr11 95503191 95503953 + 0 NA Intergenic Intergenic 10998 ENSMUSG00000046719.7 ENSMUSG00000046719 ENSMUST00000058866 Nxph3 protein_coding Interval_148441 chr7 81286334 81287935 + 0 NA intron (ENSMUSG00000025584.17, intron 3 of 21) protein_coding-intron (ENSMUSG00000025584.17, intron 3 of 21) -19559 ENSMUSG00000025584.17 ENSMUSG00000025584 ENSMUST00000130494 Pde8a protein_coding Interval_108632 chr3 129665825 129666301 + 0 NA Intergenic Intergenic 18178 ENSMUSG00000092701.1 ENSMUSG00000092701 ENSMUST00000174960 Gm24515 miRNA Interval_2963 chr1 51680604 51682443 + 0 NA Intergenic Intergenic 16377 ENSMUSG00000101741.1 ENSMUSG00000101741 ENSMUST00000186769 Gm28055 lincRNA Interval_138225 chr6 86437489 86439337 + 0 NA promoter-TSS (ENSMUSG00000046679.16) protein_coding-promoter-TSS (ENSMUSG00000046679.16) 24 ENSMUSG00000046679.16 ENSMUSG00000046679 ENSMUST00000148768 C87436 protein_coding Interval_79276 chr18 29524705 29525040 + 0 NA Intergenic Intergenic -28456 ENSMUSG00000117618.1 ENSMUSG00000117618 ENSMUST00000234290 4930578E11Rik lincRNA Interval_81592 chr18 61946475 61947473 + 0 NA Intergenic Intergenic -11754 ENSMUSG00000104035.1 ENSMUSG00000104035 ENSMUST00000194401 Gm37774 TEC Interval_35403 chr12 21373032 21374184 + 0 NA promoter-TSS (ENSMUSG00000052593.16) protein_coding-promoter-TSS (ENSMUSG00000052593.16) -85 ENSMUSG00000052593.16 ENSMUSG00000052593 ENSMUST00000142092 Adam17 protein_coding Interval_123400 chr5 32216606 32218182 + 0 NA Intergenic Intergenic -15314 ENSMUSG00000029134.14 ENSMUSG00000029134 ENSMUST00000202687 Plb1 protein_coding Interval_86862 chr19 44446643 44447249 + 0 NA Intergenic Intergenic -6071 ENSMUSG00000117796.1 ENSMUSG00000117796 ENSMUST00000237075 Gm35406 lincRNA Interval_129209 chr5 118210016 118210755 + 0 NA TTS (ENSMUSG00000089248.1) misc_RNA-TTS (ENSMUSG00000089248.1) 957 ENSMUSG00000089248.1 ENSMUSG00000089248 ENSMUST00000158623 Gm24050 misc_RNA Interval_113399 chr4 54460452 54461128 + 0 NA Intergenic Intergenic -7562 ENSMUSG00000093183.2 ENSMUSG00000093183 ENSMUST00000175442 Gm25687 misc_RNA Interval_79428 chr18 31839671 31839893 + 0 NA intron (ENSMUSG00000024400.16, intron 7 of 21) protein_coding-intron (ENSMUSG00000024400.16, intron 7 of 21) -19263 ENSMUSG00000091561.3 ENSMUSG00000091561 ENSMUST00000165131 Gm6665 processed_pseudogene Interval_104922 chr3 79023384 79023701 + 0 NA Intergenic Intergenic 43620 ENSMUSG00000077487.1 ENSMUSG00000077487 ENSMUST00000104299 Gm23440 snoRNA Interval_38580 chr12 80243661 80243852 + 0 NA intron (ENSMUSG00000015143.15, intron 1 of 20) protein_coding-intron (ENSMUSG00000015143.15, intron 1 of 20) 15028 ENSMUSG00000015143.15 ENSMUSG00000015143 ENSMUST00000220351 Actn1 protein_coding Interval_44666 chr13 47014079 47015182 + 0 NA exon (ENSMUSG00000044231.3, exon 1 of 1) protein_coding-exon (ENSMUSG00000044231.3, exon 1 of 1) 220 ENSMUSG00000044231.3 ENSMUSG00000044231 ENSMUST00000052747 Nhlrc1 protein_coding Interval_26096 chr11 54127061 54127469 + 0 NA promoter-TSS (ENSMUSG00000018906.14) protein_coding-promoter-TSS (ENSMUSG00000018906.14) 26290 ENSMUSG00000018906.14 ENSMUSG00000018906 ENSMUST00000139315 P4ha2 protein_coding Interval_133224 chr5 150673057 150674648 + 0 NA promoter-TSS (ENSMUSG00000034021.15) protein_coding-promoter-TSS (ENSMUSG00000034021.15) 113 ENSMUSG00000034021.15 ENSMUSG00000034021 ENSMUST00000132947 Pds5b protein_coding Interval_68502 chr16 78273019 78273247 + 0 NA intron (ENSMUSG00000109841.2, intron 1 of 2) processed_transcript-intron (ENSMUSG00000109841.2, intron 1 of 2) 21854 ENSMUSG00000109841.2 ENSMUSG00000109841 ENSMUST00000210555 E330011O21Rik processed_transcript Interval_7666 chr1 132919458 132919918 + 0 NA intron (ENSMUSG00000026443.3, intron 1 of 1) protein_coding-intron (ENSMUSG00000026443.3, intron 1 of 1) 4056 ENSMUSG00000106377.1 ENSMUSG00000106377 ENSMUST00000196792 Gm44300 miRNA Interval_156046 chr8 43191304 43192022 + 0 NA intron (ENSMUSG00000091490.3, intron 8 of 8) protein_coding-intron (ENSMUSG00000091490.3, intron 6 of 6) 6617 ENSMUSG00000091490.3 ENSMUSG00000091490 ENSMUST00000211228 Triml2 protein_coding Interval_100122 chr2 167188167 167191326 + 0 NA promoter-TSS (ENSMUSG00000085151.7) processed_transcript-promoter-TSS (ENSMUSG00000085151.7) -928 ENSMUSG00000050556.9 ENSMUSG00000050556 ENSMUST00000059826 Kcnb1 protein_coding Interval_38423 chr12 78952662 78952914 + 0 NA Intergenic Intergenic -45824 ENSMUSG00000021118.7 ENSMUSG00000021118 ENSMUST00000021544 Plek2 protein_coding Interval_65363 chr16 21839824 21840084 + 0 NA intron (ENSMUSG00000033618.7, intron 1 of 13) protein_coding-intron (ENSMUSG00000033618.7, intron 2 of 14) 1590 ENSMUSG00000116535.1 ENSMUSG00000116535 ENSMUST00000231614 Gm5962 processed_pseudogene Interval_26775 chr11 60391218 60391845 + 0 NA intron (ENSMUSG00000056598.16, intron 12 of 13) protein_coding-intron (ENSMUSG00000056598.16, intron 12 of 13) 25568 ENSMUSG00000042709.15 ENSMUSG00000042709 ENSMUST00000156966 Atpaf2 protein_coding Interval_63830 chr16 3843031 3843467 + 0 NA exon (ENSMUSG00000059043.2, exon 2 of 2) protein_coding-exon (ENSMUSG00000059043.2, exon 2 of 2) -4019 ENSMUSG00000054939.6 ENSMUSG00000054939 ENSMUST00000041778 Zfp174 protein_coding Interval_85811 chr19 32107570 32108295 + 0 NA exon (ENSMUSG00000024887.10, exon 1 of 15) protein_coding-exon (ENSMUSG00000024887.10, exon 1 of 15) -91128 ENSMUSG00000024887.10 ENSMUSG00000024887 ENSMUST00000235395 Asah2 protein_coding Interval_120193 chr4 144041126 144041962 + 0 NA exon (ENSMUSG00000095987.1, exon 1 of 1) processed_pseudogene-exon (ENSMUSG00000095987.1, exon 1 of 1) 934 ENSMUSG00000095987.1 ENSMUSG00000095987 ENSMUST00000119651 Gm13104 processed_pseudogene Interval_123158 chr5 30188516 30188760 + 0 NA Intergenic Intergenic 15949 ENSMUSG00000067642.11 ENSMUSG00000067642 ENSMUST00000135322 Adgrf3 protein_coding Interval_30725 chr11 96133193 96133937 + 0 NA promoter-TSS (ENSMUSG00000038756.13) protein_coding-promoter-TSS (ENSMUSG00000038756.13) -221 ENSMUSG00000038756.13 ENSMUSG00000038756 ENSMUST00000107680 Ttll6 protein_coding Interval_130475 chr5 128098041 128099643 + 0 NA intron (ENSMUSG00000034310.8, intron 3 of 8) protein_coding-intron (ENSMUSG00000034310.8, intron 3 of 8) 142497 ENSMUSG00000104581.1 ENSMUSG00000104581 ENSMUST00000197363 Gm42497 TEC Interval_43256 chr13 27641182 27641404 + 0 NA intron (ENSMUSG00000006488.17, intron 1 of 6) protein_coding-intron (ENSMUSG00000006488.17, intron 1 of 6) 1200 ENSMUSG00000006488.17 ENSMUSG00000006488 ENSMUST00000224852 Prl7a1 protein_coding Interval_576 chr1 7679082 7679788 + 0 NA Intergenic Intergenic 15354 ENSMUSG00000103903.1 ENSMUSG00000103903 ENSMUST00000194305 Rps2-ps2 processed_pseudogene Interval_142413 chr6 141768351 141768571 + 0 NA intron (ENSMUSG00000084927.1, intron 1 of 13) protein_coding-intron (ENSMUSG00000084927.1, intron 1 of 13) 5349 ENSMUSG00000084927.1 ENSMUSG00000084927 ENSMUST00000148411 Gm5724 protein_coding Interval_22261 chr11 8417123 8417574 + 0 NA Intergenic Intergenic -33495 ENSMUSG00000083553.1 ENSMUSG00000083553 ENSMUST00000117240 Gm11989 processed_pseudogene Interval_137316 chr6 71267193 71267873 + 0 NA intron (ENSMUSG00000055027.17, intron 1 of 9) protein_coding-intron (ENSMUSG00000055027.17, intron 1 of 9) -4138 ENSMUSG00000098623.1 ENSMUSG00000098623 ENSMUST00000184382 Mir8112 miRNA Interval_64985 chr16 17692920 17693477 + 0 NA intron (ENSMUSG00000012114.17, intron 2 of 3) protein_coding-intron (ENSMUSG00000012114.17, intron 2 of 17) -9729 ENSMUSG00000116561.1 ENSMUSG00000116561 ENSMUST00000231388 Gm18335 processed_pseudogene Interval_173708 chrX 102250419 102252465 + 0 NA promoter-TSS (ENSMUSG00000051159.16) protein_coding-promoter-TSS (ENSMUSG00000051159.16) 476 ENSMUSG00000051159.16 ENSMUSG00000051159 ENSMUST00000136277 Cited1 protein_coding Interval_82784 chr18 77061413 77061600 + 0 NA Intergenic Intergenic -3739 ENSMUSG00000025423.16 ENSMUSG00000025423 ENSMUST00000168882 Pias2 protein_coding Interval_96832 chr2 128692454 128693171 + 0 NA Intergenic Intergenic 60893 ENSMUSG00000085036.1 ENSMUSG00000085036 ENSMUST00000145178 Gm14011 antisense Interval_4309 chr1 72616530 72616840 + 0 NA intron (ENSMUSG00000039354.16, intron 12 of 16) protein_coding-intron (ENSMUSG00000039354.16, intron 12 of 16) -24503 ENSMUSG00000110712.1 ENSMUSG00000110712 ENSMUST00000211909 Gm39662 antisense Interval_72630 chr17 31186383 31187667 + 0 NA intron (ENSMUSG00000024034.13, intron 8 of 11) protein_coding-intron (ENSMUSG00000024034.13, intron 8 of 11) 11146 ENSMUSG00000024034.13 ENSMUSG00000024034 ENSMUST00000236793 Tmprss3 protein_coding Interval_89824 chr2 25710969 25712351 + 0 NA Intergenic Intergenic -3395 ENSMUSG00000087612.1 ENSMUSG00000087612 ENSMUST00000151069 A230005M16Rik antisense Interval_19900 chr10 111085173 111085975 + 0 NA Intergenic Intergenic 17297 ENSMUSG00000112165.1 ENSMUSG00000112165 ENSMUST00000218334 Gm48851 processed_pseudogene Interval_160072 chr8 106190337 106190609 + 0 NA TTS (ENSMUSG00000031904.5) protein_coding-TTS (ENSMUSG00000031904.5) 20460 ENSMUSG00000033106.6 ENSMUSG00000033106 ENSMUST00000212397 Slc7a6os protein_coding Interval_34762 chr12 10439641 10440141 + 0 NA Intergenic Intergenic -6497 ENSMUSG00000112792.1 ENSMUSG00000112792 ENSMUST00000218017 Gm38407 lincRNA Interval_146994 chr7 57467876 57468152 + 0 NA intron (ENSMUSG00000055078.7, intron 5 of 9) protein_coding-intron (ENSMUSG00000055078.7, intron 5 of 9) 42045 ENSMUSG00000055078.7 ENSMUSG00000055078 ENSMUST00000206734 Gabra5 protein_coding Interval_119272 chr4 136584353 136584568 + 0 NA exon (ENSMUSG00000082711.1, exon 1 of 1) processed_pseudogene-exon (ENSMUSG00000082711.1, exon 1 of 1) 200 ENSMUSG00000082711.1 ENSMUSG00000082711 ENSMUST00000118562 Gm12987 processed_pseudogene Interval_5048 chr1 84677522 84678111 + 0 NA intron (ENSMUSG00000036766.12, intron 1 of 4) protein_coding-intron (ENSMUSG00000036766.12, intron 1 of 12) -8373 ENSMUSG00000102481.1 ENSMUSG00000102481 ENSMUST00000195352 Gm37925 TEC Interval_125854 chr5 75066775 75067802 + 0 NA Intergenic Intergenic -8314 ENSMUSG00000035946.7 ENSMUSG00000035946 ENSMUST00000160104 Gsx2 protein_coding Interval_31652 chr11 101997649 101998655 + 0 NA Intergenic Intergenic -13401 ENSMUSG00000003518.13 ENSMUSG00000003518 ENSMUST00000176261 Dusp3 protein_coding Interval_116336 chr4 109957296 109957921 + 0 NA intron (ENSMUSG00000010517.7, intron 18 of 18) protein_coding-intron (ENSMUSG00000010517.7, intron 18 of 18) 20205 ENSMUSG00000085256.1 ENSMUSG00000085256 ENSMUST00000124754 Dmrta2os antisense Interval_56238 chr14 114567767 114568020 + 0 NA Intergenic Intergenic 253332 ENSMUSG00000103140.1 ENSMUSG00000103140 ENSMUST00000194590 Gm37495 TEC Interval_56175 chr14 110809565 110809911 + 0 NA Intergenic Intergenic 30510 ENSMUSG00000115349.1 ENSMUSG00000115349 ENSMUST00000228159 Gm9348 processed_pseudogene Interval_81719 chr18 63885958 63887655 + 0 NA intron (ENSMUSG00000040560.10, intron 20 of 26) protein_coding-intron (ENSMUSG00000040560.10, intron 21 of 27) 12225 ENSMUSG00000118258.1 ENSMUSG00000118258 ENSMUST00000237352 Gm19076 processed_pseudogene Interval_63870 chr16 4110113 4110513 + 0 NA intron (ENSMUSG00000022521.10, intron 15 of 29) protein_coding-intron (ENSMUSG00000022521.10, intron 16 of 30) -15669 ENSMUSG00000022521.10 ENSMUSG00000022521 ENSMUST00000205685 Crebbp protein_coding Interval_148174 chr7 79639203 79640021 + 0 NA Intergenic Intergenic -31309 ENSMUSG00000046591.10 ENSMUSG00000046591 ENSMUST00000206677 Ticrr protein_coding Interval_149155 chr7 95462123 95462667 + 0 NA exon (ENSMUSG00000108786.1, exon 1 of 1) processed_pseudogene-exon (ENSMUSG00000108786.1, exon 1 of 1) 404 ENSMUSG00000108786.1 ENSMUSG00000108786 ENSMUST00000206627 Gm8309 processed_pseudogene Interval_136247 chr6 52262875 52263073 + 0 NA promoter-TSS (ENSMUSG00000099229.1) misc_RNA-promoter-TSS (ENSMUSG00000099229.1) -84 ENSMUSG00000099229.1 ENSMUSG00000099229 ENSMUST00000184418 Gm27383 misc_RNA Interval_40863 chr12 108953650 108954166 + 0 NA intron (ENSMUSG00000040877.16, intron 1 of 2) protein_coding-intron (ENSMUSG00000040877.16, intron 3 of 7) -7004 ENSMUSG00000113966.1 ENSMUSG00000113966 ENSMUST00000222257 Gm47980 TEC Interval_145263 chr7 31034604 31034982 + 0 NA exon (ENSMUSG00000009687.14, exon 8 of 8) protein_coding-exon (ENSMUSG00000009687.14, exon 8 of 8) 3145 ENSMUSG00000009687.14 ENSMUSG00000009687 ENSMUST00000161259 Fxyd5 protein_coding Interval_168080 chr9 75993871 75994102 + 0 NA intron (ENSMUSG00000097836.1, intron 2 of 4) antisense-intron (ENSMUSG00000097836.1, intron 2 of 4) -20998 ENSMUSG00000007908.14 ENSMUSG00000007908 ENSMUST00000117981 Hmgcll1 protein_coding Interval_98850 chr2 155569051 155569798 + 0 NA intron (ENSMUSG00000027605.18, intron 1 of 3) protein_coding-intron (ENSMUSG00000027605.18, intron 17 of 19) 874 ENSMUSG00000027605.18 ENSMUSG00000027605 ENSMUST00000148870 Acss2 protein_coding Interval_63218 chr15 99787764 99787981 + 0 NA intron (ENSMUSG00000023022.14, intron 6 of 7) protein_coding-intron (ENSMUSG00000023022.14, intron 9 of 10) 15254 ENSMUSG00000065643.1 ENSMUSG00000065643 ENSMUST00000083709 Gm25897 snRNA Interval_19189 chr10 95384295 95384491 + 0 NA TTS (ENSMUSG00000020027.18) protein_coding-TTS (ENSMUSG00000020027.18) 29505 ENSMUSG00000100550.2 ENSMUSG00000100550 ENSMUST00000219492 2310039L15Rik lincRNA Interval_15434 chr10 46392825 46393058 + 0 NA Intergenic Intergenic 15332 ENSMUSG00000094681.1 ENSMUSG00000094681 ENSMUST00000180247 Gm25740 snRNA Interval_117847 chr4 126593837 126594209 + 0 NA TTS (ENSMUSG00000042489.15) protein_coding-TTS (ENSMUSG00000042489.15) -9214 ENSMUSG00000081319.1 ENSMUSG00000081319 ENSMUST00000121439 Gm12936 processed_pseudogene Interval_62498 chr15 93510860 93511058 + 0 NA intron (ENSMUSG00000036158.12, intron 2 of 7) protein_coding-intron (ENSMUSG00000036158.12, intron 2 of 7) 8564 ENSMUSG00000036158.12 ENSMUSG00000036158 ENSMUST00000048982 Prickle1 protein_coding Interval_150415 chr7 110265710 110266121 + 0 NA TTS (ENSMUSG00000031015.8) protein_coding-TTS (ENSMUSG00000031015.8) 15612 ENSMUSG00000109799.1 ENSMUSG00000109799 ENSMUST00000210796 Gm45515 antisense Interval_15611 chr10 52297671 52298891 + 0 NA intron (ENSMUSG00000019891.15, intron 4 of 9) protein_coding-intron (ENSMUSG00000019891.15, intron 5 of 10) 45376 ENSMUSG00000112550.1 ENSMUSG00000112550 ENSMUST00000218299 Gm6627 processed_pseudogene Interval_159590 chr8 95671038 95671565 + 0 NA Intergenic Intergenic 4093 ENSMUSG00000110701.1 ENSMUSG00000110701 ENSMUST00000212264 Gm6013 processed_pseudogene Interval_120988 chr4 152072206 152072875 + 0 NA promoter-TSS (ENSMUSG00000039713.17) protein_coding-promoter-TSS (ENSMUSG00000039713.17) -3746 ENSMUSG00000039713.17 ENSMUSG00000039713 ENSMUST00000142412 Plekhg5 protein_coding Interval_114727 chr4 84488001 84488241 + 0 NA intron (ENSMUSG00000028487.18, intron 2 of 5) protein_coding-intron (ENSMUSG00000028487.18, intron 4 of 7) -58997 ENSMUSG00000083743.1 ENSMUSG00000083743 ENSMUST00000119071 Gm12421 processed_pseudogene Interval_56086 chr14 105500984 105503343 + 0 NA TTS (ENSMUSG00000022116.7) processed_transcript-TTS (ENSMUSG00000022116.7) 1227 ENSMUSG00000022116.7 ENSMUSG00000022116 ENSMUST00000188698 4930449E01Rik processed_transcript Interval_123397 chr5 32197436 32198192 + 0 NA Intergenic Intergenic 12317 ENSMUSG00000107220.1 ENSMUSG00000107220 ENSMUST00000200908 Gm9555 processed_pseudogene Interval_3419 chr1 58186187 58187017 + 0 NA intron (ENSMUSG00000064294.12, intron 32 of 34) protein_coding-intron (ENSMUSG00000064294.12, intron 32 of 34) -24616 ENSMUSG00000038242.12 ENSMUSG00000038242 ENSMUST00000161926 Aox4 protein_coding Interval_136671 chr6 57484281 57484563 + 0 NA promoter-TSS (ENSMUSG00000108112.1) processed_transcript-promoter-TSS (ENSMUSG00000108112.1) -699 ENSMUSG00000108112.1 ENSMUSG00000108112 ENSMUST00000204686 Gm45193 processed_transcript Interval_109594 chr3 144905768 144906003 + 0 NA Intergenic Intergenic -16140 ENSMUSG00000074196.10 ENSMUSG00000074196 ENSMUST00000098551 Clca4c-ps transcribed_unprocessed_pseudogene Interval_50180 chr14 8709369 8710521 + 0 NA Intergenic Intergenic 22526 ENSMUSG00000114764.1 ENSMUSG00000114764 ENSMUST00000225348 Gm20241 processed_pseudogene Interval_147550 chr7 68233742 68234477 + 0 NA TTS (ENSMUSG00000005533.10) protein_coding-TTS (ENSMUSG00000005533.10) 22271 ENSMUSG00000005533.10 ENSMUSG00000005533 ENSMUST00000208871 Igf1r protein_coding Interval_155431 chr8 33554048 33555059 + 0 NA intron (ENSMUSG00000009628.14, intron 5 of 5) protein_coding-intron (ENSMUSG00000009628.14, intron 4 of 7) 37815 ENSMUSG00000009628.14 ENSMUSG00000009628 ENSMUST00000009772 Tex15 protein_coding Interval_53586 chr14 59603951 59604889 + 0 NA Intergenic Intergenic -6481 ENSMUSG00000021982.14 ENSMUSG00000021982 ENSMUST00000223842 Cdadc1 protein_coding Interval_128043 chr5 110466604 110467174 + 0 NA Intergenic Intergenic 15312 ENSMUSG00000105603.1 ENSMUSG00000105603 ENSMUST00000199828 Gm32996 processed_pseudogene Interval_70817 chr17 15064999 15066540 + 0 NA exon (ENSMUSG00000036552.19, exon 1 of 2) protein_coding-exon (ENSMUSG00000036552.19, exon 1 of 2) 12927 ENSMUSG00000036552.19 ENSMUSG00000036552 ENSMUST00000186130 Ermard protein_coding Interval_70611 chr17 12307699 12309465 + 0 NA promoter-TSS (ENSMUSG00000014426.9) protein_coding-promoter-TSS (ENSMUSG00000014426.9) 7546 ENSMUSG00000077476.1 ENSMUSG00000077476 ENSMUST00000104288 Gm24794 snoRNA Interval_10594 chr1 172107654 172108084 + 0 NA intron (ENSMUSG00000026553.17, intron 13 of 32) protein_coding-intron (ENSMUSG00000026553.17, intron 13 of 32) 8133 ENSMUSG00000026553.17 ENSMUSG00000026553 ENSMUST00000142765 Copa protein_coding Interval_148436 chr7 81222581 81222788 + 0 NA exon (ENSMUSG00000083774.1, exon 1 of 1) processed_pseudogene-exon (ENSMUSG00000083774.1, exon 1 of 1) 190 ENSMUSG00000083774.1 ENSMUSG00000083774 ENSMUST00000121753 Gm7180 processed_pseudogene Interval_67495 chr16 49905263 49906226 + 0 NA intron (ENSMUSG00000055447.19, intron 8 of 9) protein_coding-intron (ENSMUSG00000055447.19, intron 8 of 9) 50099 ENSMUSG00000055447.19 ENSMUSG00000055447 ENSMUST00000229104 Cd47 protein_coding Interval_110300 chr3 156252033 156252245 + 0 NA Intergenic Intergenic -12447 ENSMUSG00000104573.1 ENSMUSG00000104573 ENSMUST00000199214 Gm42886 processed_pseudogene Interval_113456 chr4 55103790 55104012 + 0 NA Intergenic Intergenic -12662 ENSMUSG00000082704.1 ENSMUSG00000082704 ENSMUST00000120116 Gm12515 processed_pseudogene Interval_4271 chr1 72300893 72301285 + 0 NA TTS (ENSMUSG00000026188.11) protein_coding-TTS (ENSMUSG00000026188.11) -6338 ENSMUSG00000026187.9 ENSMUSG00000026187 ENSMUST00000027379 Xrcc5 protein_coding Interval_143724 chr7 15937333 15938072 + 0 NA TTS (ENSMUSG00000041560.12) protein_coding-TTS (ENSMUSG00000041560.12) 1168 ENSMUSG00000080478.1 ENSMUSG00000080478 ENSMUST00000116828 Snord23 snoRNA Interval_104202 chr3 60526535 60528823 + 0 NA promoter-TSS (ENSMUSG00000027763.13) protein_coding-promoter-TSS (ENSMUSG00000027763.13) -8072 ENSMUSG00000104235.1 ENSMUSG00000104235 ENSMUST00000193609 Gm37589 TEC Interval_144138 chr7 19599967 19601202 + 0 NA intron (ENSMUSG00000061028.7, intron 2 of 19) protein_coding-intron (ENSMUSG00000061028.7, intron 2 of 20) -14726 ENSMUSG00000061028.7 ENSMUSG00000061028 ENSMUST00000207325 Clasrp protein_coding Interval_54441 chr14 69783045 69784241 + 0 NA TTS (ENSMUSG00000022074.6) protein_coding-TTS (ENSMUSG00000022074.6) 16158 ENSMUSG00000022074.6 ENSMUSG00000022074 ENSMUST00000224235 Tnfrsf10b protein_coding Interval_47863 chr13 93974752 93975090 + 0 NA Intergenic Intergenic 16847 ENSMUSG00000113791.1 ENSMUSG00000113791 ENSMUST00000221440 Gm47216 lincRNA Interval_125210 chr5 65378756 65380193 + 0 NA TTS (ENSMUSG00000029195.10) protein_coding-TTS (ENSMUSG00000029195.10) 11512 ENSMUSG00000047215.14 ENSMUSG00000047215 ENSMUST00000128074 Rpl9 protein_coding Interval_132485 chr5 145242841 145243032 + 0 NA exon (ENSMUSG00000007812.16, exon 3 of 4) protein_coding-exon (ENSMUSG00000007812.16, exon 3 of 4) 11221 ENSMUSG00000007812.16 ENSMUSG00000007812 ENSMUST00000085661 Zfp655 protein_coding Interval_33811 chr11 118685003 118685664 + 0 NA intron (ENSMUSG00000025576.17, intron 2 of 14) protein_coding-intron (ENSMUSG00000025576.17, intron 2 of 14) -106039 ENSMUSG00000085059.1 ENSMUSG00000085059 ENSMUST00000146016 Gm11750 lincRNA Interval_66818 chr16 37867732 37869309 + 0 NA exon (ENSMUSG00000034158.9, exon 1 of 4) protein_coding-exon (ENSMUSG00000034158.9, exon 1 of 4) 131 ENSMUSG00000034158.9 ENSMUSG00000034158 ENSMUST00000078717 Lrrc58 protein_coding Interval_75167 chr17 64252218 64252589 + 0 NA Intergenic Intergenic 69212 ENSMUSG00000080455.1 ENSMUSG00000080455 ENSMUST00000116805 Gm24194 miRNA Interval_31059 chr11 97935557 97937320 + 0 NA TTS (ENSMUSG00000017417.14) protein_coding-TTS (ENSMUSG00000017417.14) 5302 ENSMUSG00000093013.1 ENSMUSG00000093013 ENSMUST00000175272 Gm22461 miRNA Interval_146760 chr7 49995721 49996068 + 0 NA intron (ENSMUSG00000055409.14, intron 2 of 9) protein_coding-intron (ENSMUSG00000055409.14, intron 2 of 19) 85595 ENSMUSG00000039728.15 ENSMUSG00000039728 ENSMUST00000107605 Slc6a5 protein_coding Interval_137434 chr6 72260755 72262031 + 0 NA Intergenic Intergenic -26163 ENSMUSG00000037621.8 ENSMUSG00000037621 ENSMUST00000206553 Atoh8 protein_coding Interval_29123 chr11 80463085 80464271 + 0 NA intron (ENSMUSG00000017428.16, intron 3 of 7) protein_coding-intron (ENSMUSG00000017428.16, intron 8 of 13) -13378 ENSMUSG00000048895.13 ENSMUSG00000048895 ENSMUST00000147694 Cdk5r1 protein_coding Interval_145146 chr7 30297124 30297687 + 0 NA TTS (ENSMUSG00000013921.15) protein_coding-TTS (ENSMUSG00000013921.15) 5676 ENSMUSG00000013921.15 ENSMUSG00000013921 ENSMUST00000132844 Clip3 protein_coding Interval_48986 chr13 106763121 106763477 + 0 NA Intergenic Intergenic -1720 ENSMUSG00000114422.1 ENSMUSG00000114422 ENSMUST00000225713 Gm30411 lincRNA Interval_41907 chr13 4211947 4212550 + 0 NA Intergenic Intergenic 18390 ENSMUSG00000021213.12 ENSMUSG00000021213 ENSMUST00000140971 Akr1c13 protein_coding Interval_108956 chr3 133578812 133580250 + 0 NA TTS (ENSMUSG00000105595.1) processed_pseudogene-TTS (ENSMUSG00000105595.1) 370 ENSMUSG00000105595.1 ENSMUSG00000105595 ENSMUST00000197855 Gm49316 processed_pseudogene Interval_127608 chr5 105752687 105753236 + 0 NA intron (ENSMUSG00000046079.16, intron 1 of 2) protein_coding-intron (ENSMUSG00000046079.16, intron 2 of 2) 21572 ENSMUSG00000046079.16 ENSMUSG00000046079 ENSMUST00000134605 Lrrc8d protein_coding Interval_144343 chr7 24593431 24595042 + 0 NA intron (ENSMUSG00000064254.6, intron 2 of 7) protein_coding-intron (ENSMUSG00000064254.6, intron 2 of 7) -6595 ENSMUSG00000066721.3 ENSMUSG00000066721 ENSMUST00000094705 Zfp575 protein_coding Interval_116208 chr4 108690486 108690669 + 0 NA intron (ENSMUSG00000034557.14, intron 6 of 17) protein_coding-intron (ENSMUSG00000034557.14, intron 4 of 15) -29072 ENSMUSG00000094958.1 ENSMUSG00000094958 ENSMUST00000178992 3110021N24Rik protein_coding Interval_169734 chr9 100765297 100766179 + 0 NA intron (ENSMUSG00000037286.15, intron 5 of 8) protein_coding-intron (ENSMUSG00000037286.15, intron 5 of 8) 62525 ENSMUSG00000104272.1 ENSMUSG00000104272 ENSMUST00000195122 Gm38297 TEC Interval_166131 chr9 56909788 56910469 + 0 NA Intergenic Intergenic 6667 ENSMUSG00000110888.1 ENSMUSG00000110888 ENSMUST00000213195 Gm47237 lincRNA Interval_129709 chr5 121894665 121895009 + 0 NA TTS (ENSMUSG00000042589.18) protein_coding-TTS (ENSMUSG00000042589.18) -28774 ENSMUSG00000042589.18 ENSMUSG00000042589 ENSMUST00000125267 Cux2 protein_coding Interval_155080 chr8 26247052 26248128 + 0 NA Intergenic Intergenic 4866 ENSMUSG00000110075.1 ENSMUSG00000110075 ENSMUST00000209799 Gm45305 lincRNA Interval_17464 chr10 77048420 77049303 + 0 NA intron (ENSMUSG00000001436.15, intron 2 of 2) protein_coding-intron (ENSMUSG00000001436.15, intron 5 of 5) 11136 ENSMUSG00000001435.15 ENSMUSG00000001435 ENSMUST00000156009 Col18a1 protein_coding Interval_35066 chr12 17018484 17019737 + 0 NA Intergenic Intergenic -7556 ENSMUSG00000071398.8 ENSMUSG00000071398 ENSMUST00000189479 2410004P03Rik protein_coding Interval_207 KQ030491.1 18214 18664 + 0 NA NA NA NA NA Interval_4486 chr1 74505486 74506854 + 0 NA promoter-TSS (ENSMUSG00000033364.13) protein_coding-promoter-TSS (ENSMUSG00000033364.13) -385 ENSMUSG00000033364.13 ENSMUSG00000033364 ENSMUST00000187590 Usp37 protein_coding Interval_142211 chr6 138747277 138748145 + 0 NA Intergenic Intergenic -89167 ENSMUSG00000046717.5 ENSMUSG00000046717 ENSMUST00000054786 Igbp1b protein_coding Interval_171727 chr9 120538953 120540206 + 0 NA promoter-TSS (ENSMUSG00000041608.8) protein_coding-promoter-TSS (ENSMUSG00000041608.8) 17766 ENSMUSG00000111816.1 ENSMUSG00000111816 ENSMUST00000214719 Gm7229 unprocessed_pseudogene Interval_97671 chr2 142599199 142599390 + 0 NA Intergenic Intergenic 22366 ENSMUSG00000083215.3 ENSMUSG00000083215 ENSMUST00000119377 Rbmx2-ps processed_pseudogene Interval_140207 chr6 115546236 115546947 + 0 NA intron (ENSMUSG00000042389.13, intron 1 of 1) protein_coding-intron (ENSMUSG00000042389.13, intron 1 of 11) -9691 ENSMUSG00000107704.1 ENSMUSG00000107704 ENSMUST00000203752 Gm36355 lincRNA Interval_30108 chr11 89252968 89253233 + 0 NA Intergenic Intergenic 49232 ENSMUSG00000048616.4 ENSMUSG00000048616 ENSMUST00000061728 Nog protein_coding Interval_43479 chr13 31746008 31747139 + 0 NA Intergenic Intergenic -8833 ENSMUSG00000065843.1 ENSMUSG00000065843 ENSMUST00000083909 Gm25186 snRNA Interval_91877 chr2 50942159 50942940 + 0 NA Intergenic Intergenic 32865 ENSMUSG00000083270.1 ENSMUSG00000083270 ENSMUST00000119159 Gm13498 processed_pseudogene Interval_59672 chr15 57810269 57810558 + 0 NA intron (ENSMUSG00000071757.10, intron 2 of 2) protein_coding-intron (ENSMUSG00000071757.10, intron 2 of 3) -71747 ENSMUSG00000047807.10 ENSMUSG00000047807 ENSMUST00000176703 9330154K18Rik antisense Interval_167136 chr9 65586784 65589074 + 0 NA TTS (ENSMUSG00000041064.14) protein_coding-TTS (ENSMUSG00000041064.14) 724 ENSMUSG00000041064.14 ENSMUSG00000041064 ENSMUST00000141046 Pif1 protein_coding Interval_57126 chr15 6746066 6748247 + 0 NA intron (ENSMUSG00000050310.9, intron 5 of 9) protein_coding-intron (ENSMUSG00000050310.9, intron 5 of 37) 38777 ENSMUSG00000050310.9 ENSMUSG00000050310 ENSMUST00000061656 Rictor protein_coding Interval_144978 chr7 29231860 29232830 + 0 NA exon (ENSMUSG00000046410.10, exon 1 of 3) protein_coding-exon (ENSMUSG00000046410.10, exon 1 of 3) -1038 ENSMUSG00000046410.10 ENSMUSG00000046410 ENSMUST00000208807 Kcnk6 protein_coding Interval_162030 chr8 124547215 124547591 + 0 NA intron (ENSMUSG00000031979.17, intron 15 of 17) protein_coding-intron (ENSMUSG00000031979.17, intron 15 of 17) 22303 ENSMUSG00000031980.10 ENSMUSG00000031980 ENSMUST00000063278 Agt protein_coding Interval_68877 chr16 87746663 87747720 + 0 NA Intergenic Intergenic 14452 ENSMUSG00000088684.1 ENSMUSG00000088684 ENSMUST00000158059 Gm23994 snoRNA Interval_61610 chr15 82937644 82937966 + 0 NA intron (ENSMUSG00000041852.15, intron 1 of 1) protein_coding-intron (ENSMUSG00000041852.15, intron 1 of 1) 21491 ENSMUSG00000092751.1 ENSMUSG00000092751 ENSMUST00000175010 Mir3080 miRNA Interval_20315 chr10 116834338 116834645 + 0 NA exon (ENSMUSG00000034057.8, exon 7 of 25) protein_coding-exon (ENSMUSG00000034057.8, exon 7 of 25) 62428 ENSMUSG00000034057.8 ENSMUSG00000034057 ENSMUST00000048229 Myrfl protein_coding Interval_102187 chr3 19290163 19291105 + 0 NA intron (ENSMUSG00000069094.12, intron 1 of 8) protein_coding-intron (ENSMUSG00000069094.12, intron 1 of 12) 20418 ENSMUSG00000069094.12 ENSMUSG00000069094 ENSMUST00000143120 Pde7a protein_coding Interval_77756 chr18 3245102 3247034 + 0 NA Intergenic Intergenic -74136 ENSMUSG00000117464.1 ENSMUSG00000117464 ENSMUST00000234747 Gm50075 processed_pseudogene Interval_29642 chr11 85760146 85760422 + 0 NA TTS (ENSMUSG00000093278.1) miRNA-TTS (ENSMUSG00000093278.1) 418 ENSMUSG00000093278.1 ENSMUSG00000093278 ENSMUST00000175537 Mir5110 miRNA Interval_79593 chr18 33920453 33921584 + 0 NA exon (ENSMUSG00000024376.7, exon 3 of 3) protein_coding-exon (ENSMUSG00000024376.7, exon 3 of 3) 85948 ENSMUSG00000024376.7 ENSMUSG00000024376 ENSMUST00000237971 Epb41l4a protein_coding Interval_70929 chr17 16130586 16131794 + 0 NA Intergenic Intergenic -31961 ENSMUSG00000116839.1 ENSMUSG00000116839 ENSMUST00000232488 Gm49778 lincRNA Interval_157638 chr8 71954759 71955004 + 0 NA intron (ENSMUSG00000052446.17, intron 1 of 3) protein_coding-intron (ENSMUSG00000052446.17, intron 1 of 3) 1434 ENSMUSG00000052446.17 ENSMUSG00000052446 ENSMUST00000151168 Zfp961 protein_coding Interval_161316 chr8 119698217 119698479 + 0 NA Intergenic Intergenic -1722 ENSMUSG00000034112.9 ENSMUSG00000034112 ENSMUST00000212454 Atp2c2 protein_coding Interval_168324 chr9 78724979 78725732 + 0 NA Intergenic Intergenic 40245 ENSMUSG00000111139.1 ENSMUSG00000111139 ENSMUST00000217312 Gm47497 processed_pseudogene Interval_49267 chr13 109948231 109948593 + 0 NA TTS (ENSMUSG00000021699.17) protein_coding-TTS (ENSMUSG00000021699.17) 44603 ENSMUSG00000084651.1 ENSMUSG00000084651 ENSMUST00000122702 Mir1904 miRNA Interval_70908 chr17 15786321 15787277 + 0 NA Intergenic Intergenic 44086 ENSMUSG00000048027.9 ENSMUSG00000048027 ENSMUST00000231985 Rgmb protein_coding Interval_109274 chr3 138551457 138552493 + 0 NA intron (ENSMUSG00000028156.12, intron 4 of 5) protein_coding-intron (ENSMUSG00000028156.12, intron 6 of 7) 24690 ENSMUSG00000028156.12 ENSMUSG00000028156 ENSMUST00000198252 Eif4e protein_coding Interval_104926 chr3 79054897 79055799 + 0 NA Intergenic Intergenic 75426 ENSMUSG00000077487.1 ENSMUSG00000077487 ENSMUST00000104299 Gm23440 snoRNA Interval_121755 chr5 6795002 6796214 + 0 NA intron (ENSMUSG00000092094.5, intron 2 of 3) protein_coding-intron (ENSMUSG00000092094.5, intron 1 of 2) -46151 ENSMUSG00000106532.1 ENSMUSG00000106532 ENSMUST00000197343 Gm5714 processed_pseudogene Interval_139094 chr6 95057973 95058259 + 0 NA Intergenic Intergenic 42191 ENSMUSG00000093999.1 ENSMUSG00000093999 ENSMUST00000178307 Gm26501 snRNA Interval_47250 chr13 79668763 79669370 + 0 NA Intergenic Intergenic -169011 ENSMUSG00000114505.1 ENSMUSG00000114505 ENSMUST00000223593 Gm48471 processed_pseudogene Interval_145727 chr7 37831513 37832085 + 0 NA Intergenic Intergenic -7452 ENSMUSG00000064591.1 ENSMUSG00000064591 ENSMUST00000082657 Gm22302 snRNA Interval_87331 chr19 47748663 47749817 + 0 NA intron (ENSMUSG00000044948.17, intron 8 of 16) protein_coding-intron (ENSMUSG00000044948.17, intron 31 of 37) 5917 ENSMUSG00000099069.1 ENSMUSG00000099069 ENSMUST00000185078 Mir8090 miRNA Interval_148706 chr7 84378981 84379283 + 0 NA intron (ENSMUSG00000015709.9, intron 1 of 7) protein_coding-intron (ENSMUSG00000015709.9, intron 1 of 18) -11221 ENSMUSG00000015709.9 ENSMUSG00000015709 ENSMUST00000208863 Arnt2 protein_coding Interval_32007 chr11 104424156 104425688 + 0 NA TTS (ENSMUSG00000018412.16) protein_coding-TTS (ENSMUSG00000018412.16) 378 ENSMUSG00000106014.1 ENSMUSG00000106014 ENSMUST00000195891 Gm47315 miRNA Interval_142013 chr6 136545359 136545955 + 0 NA intron (ENSMUSG00000030213.12, intron 1 of 8) protein_coding-intron (ENSMUSG00000030213.12, intron 1 of 14) -26626 ENSMUSG00000107702.1 ENSMUSG00000107702 ENSMUST00000204157 Gm44140 bidirectional_promoter_lncRNA Interval_29739 chr11 86497825 86498387 + 0 NA TTS (ENSMUSG00000020516.15) protein_coding-TTS (ENSMUSG00000020516.15) 13376 ENSMUSG00000020521.7 ENSMUSG00000020521 ENSMUST00000131246 Rnft1 protein_coding Interval_101670 chr3 8776934 8777398 + 0 NA Intergenic Intergenic -30342 ENSMUSG00000103256.1 ENSMUSG00000103256 ENSMUST00000194556 Gm37647 TEC Interval_158927 chr8 88012328 88013121 + 0 NA Intergenic Intergenic 58086 ENSMUSG00000110719.1 ENSMUSG00000110719 ENSMUST00000212350 Gm2716 unitary_pseudogene Interval_161913 chr8 123720672 123722778 + 0 NA intron (ENSMUSG00000092329.1, intron 1 of 15) protein_coding-intron (ENSMUSG00000092329.1, intron 1 of 15) -12233 ENSMUSG00000110599.1 ENSMUSG00000110599 ENSMUST00000212339 6030466F02Rik lincRNA Interval_8260 chr1 136779813 136780223 + 0 NA Intergenic Intergenic 9502 ENSMUSG00000104360.1 ENSMUSG00000104360 ENSMUST00000193486 Gm8762 processed_pseudogene Interval_146620 chr7 48678997 48679589 + 0 NA Intergenic Intergenic 6321 ENSMUSG00000099889.1 ENSMUSG00000099889 ENSMUST00000187816 Mrgprb11-ps unprocessed_pseudogene Interval_74768 chr17 56424860 56426025 + 0 NA promoter-TSS (ENSMUSG00000013236.17) protein_coding-promoter-TSS (ENSMUSG00000013236.17) -6533 ENSMUSG00000098339.1 ENSMUSG00000098339 ENSMUST00000184960 Mir6977 miRNA Interval_95920 chr2 118414442 118414656 + 0 NA intron (ENSMUSG00000005102.13, intron 6 of 10) protein_coding-intron (ENSMUSG00000005102.13, intron 6 of 38) -41130 ENSMUSG00000040133.2 ENSMUSG00000040133 ENSMUST00000039160 Gpr176 protein_coding Interval_90643 chr2 31635102 31638335 + 0 NA exon (ENSMUSG00000085224.2, exon 3 of 3) antisense-exon (ENSMUSG00000085224.2, exon 3 of 3) -3319 ENSMUSG00000079466.2 ENSMUSG00000079466 ENSMUST00000113470 Prdm12 protein_coding Interval_80321 chr18 39185761 39187006 + 0 NA intron (ENSMUSG00000036452.18, intron 11 of 22) protein_coding-intron (ENSMUSG00000036452.18, intron 11 of 22) -105052 ENSMUSG00000036452.18 ENSMUSG00000036452 ENSMUST00000133247 Arhgap26 protein_coding Interval_136356 chr6 53712706 53714168 + 0 NA Intergenic Intergenic 45667 ENSMUSG00000108004.1 ENSMUSG00000108004 ENSMUST00000204451 Gm44080 TEC Interval_133266 chr5 150952255 150953649 + 0 NA exon (ENSMUSG00000058488.7, exon 1 of 5) protein_coding-exon (ENSMUSG00000058488.7, exon 1 of 5) 248 ENSMUSG00000058488.7 ENSMUSG00000058488 ENSMUST00000202096 Kl protein_coding Interval_160612 chr8 111044705 111044903 + 0 NA intron (ENSMUSG00000031960.14, intron 7 of 7) protein_coding-intron (ENSMUSG00000031960.14, intron 9 of 20) -2780 ENSMUSG00000092671.1 ENSMUSG00000092671 ENSMUST00000174930 Gm24103 miRNA Interval_70210 chr17 6739394 6739783 + 0 NA intron (ENSMUSG00000052397.8, intron 12 of 12) protein_coding-intron (ENSMUSG00000052397.8, intron 12 of 12) 3233 ENSMUSG00000052397.8 ENSMUSG00000052397 ENSMUST00000131131 Ezr protein_coding Interval_141794 chr6 134566047 134567601 + 0 NA promoter-TSS (ENSMUSG00000030201.15) protein_coding-promoter-TSS (ENSMUSG00000030201.15) 40857 ENSMUSG00000107728.1 ENSMUSG00000107728 ENSMUST00000204630 Gm38910 lincRNA Interval_81268 chr18 57085336 57086307 + 0 NA Intergenic Intergenic 31459 ENSMUSG00000118050.1 ENSMUSG00000118050 ENSMUST00000236271 Gm18739 processed_pseudogene Interval_86112 chr19 36818054 36819469 + 0 NA exon (ENSMUSG00000117938.1, exon 1 of 1) processed_pseudogene-exon (ENSMUSG00000117938.1, exon 1 of 1) 113 ENSMUSG00000117938.1 ENSMUSG00000117938 ENSMUST00000236351 Gm50112 processed_pseudogene Interval_173032 chrX 66443895 66444304 + 0 NA Intergenic Intergenic -4067 ENSMUSG00000089398.1 ENSMUSG00000089398 ENSMUST00000158773 Gm23028 misc_RNA Interval_82538 chr18 75010303 75011164 + 0 NA TTS (ENSMUSG00000036299.5) protein_coding-TTS (ENSMUSG00000036299.5) 4833 ENSMUSG00000036299.5 ENSMUSG00000036299 ENSMUST00000235420 BC031181 protein_coding Interval_52217 chr14 40757621 40759721 + 0 NA Intergenic Intergenic 11444 ENSMUSG00000114933.1 ENSMUSG00000114933 ENSMUST00000225171 Gm48040 processed_pseudogene Interval_36037 chr12 33522282 33522554 + 0 NA Intergenic Intergenic -25521 ENSMUSG00000112076.1 ENSMUSG00000112076 ENSMUST00000219348 Gm9368 processed_pseudogene Interval_6921 chr1 120713608 120713794 + 0 NA Intergenic Intergenic -44742 ENSMUSG00000101386.1 ENSMUSG00000101386 ENSMUST00000188147 Gm29346 lincRNA Interval_118301 chr4 130148090 130149499 + 0 NA Intergenic Intergenic -11166 ENSMUSG00000028778.15 ENSMUSG00000028778 ENSMUST00000164887 Hcrtr1 protein_coding Interval_158780 chr8 86389868 86390484 + 0 NA Intergenic Intergenic 97675 ENSMUSG00000065737.1 ENSMUSG00000065737 ENSMUST00000083803 Gm24490 snRNA Interval_42201 chr13 9824947 9825166 + 0 NA Intergenic Intergenic 4545 ENSMUSG00000113754.1 ENSMUSG00000113754 ENSMUST00000223507 Gm47401 processed_pseudogene Interval_26043 chr11 53706595 53708101 + 0 NA promoter-TSS (ENSMUSG00000020380.16) protein_coding-promoter-TSS (ENSMUSG00000020380.16) 6169 ENSMUSG00000084419.1 ENSMUSG00000084419 ENSMUST00000122470 Gm22275 misc_RNA Interval_129968 chr5 123368577 123369456 + 0 NA TTS (ENSMUSG00000104830.1) processed_transcript-TTS (ENSMUSG00000104830.1) 2017 ENSMUSG00000104830.1 ENSMUSG00000104830 ENSMUST00000200118 5830487J09Rik processed_transcript Interval_71728 chr17 25723894 25724114 + 0 NA TTS (ENSMUSG00000019214.14) protein_coding-TTS (ENSMUSG00000019214.14) 3352 ENSMUSG00000019214.14 ENSMUSG00000019214 ENSMUST00000237158 Chtf18 protein_coding Interval_121316 chr4 154943931 154944627 + 0 NA Intergenic Intergenic -16202 ENSMUSG00000042333.16 ENSMUSG00000042333 ENSMUST00000145296 Tnfrsf14 protein_coding Interval_104112 chr3 58679128 58680406 + 0 NA intron (ENSMUSG00000036432.8, intron 1 of 1) protein_coding-intron (ENSMUSG00000036432.8, intron 1 of 1) 6270 ENSMUSG00000036432.8 ENSMUSG00000036432 ENSMUST00000145032 Siah2 protein_coding Interval_133602 chr6 7487115 7488106 + 0 NA Intergenic Intergenic -53344 ENSMUSG00000107493.1 ENSMUSG00000107493 ENSMUST00000204531 Gm44048 processed_pseudogene Interval_84503 chr19 11937644 11937848 + 0 NA intron (ENSMUSG00000046139.8, intron 16 of 19) protein_coding-intron (ENSMUSG00000046139.8, intron 15 of 18) -4118 ENSMUSG00000077227.1 ENSMUSG00000077227 ENSMUST00000104039 Gm22272 snoRNA Interval_139084 chr6 94898826 94899051 + 0 NA Intergenic Intergenic -44896 ENSMUSG00000108187.1 ENSMUSG00000108187 ENSMUST00000203778 4930511E03Rik lincRNA Interval_58381 chr15 34029892 34030159 + 0 NA intron (ENSMUSG00000115428.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000115428.1, intron 1 of 2) 7755 ENSMUSG00000115428.1 ENSMUSG00000115428 ENSMUST00000228182 Gm41290 lincRNA Interval_153025 chr7 140954880 140956617 + 0 NA exon (ENSMUSG00000060591.9, exon 1 of 2) protein_coding-exon (ENSMUSG00000060591.9, exon 1 of 2) 189 ENSMUSG00000110104.1 ENSMUSG00000110104 ENSMUST00000211129 Gm45717 protein_coding Interval_3825 chr1 63284662 63285216 + 0 NA intron (ENSMUSG00000027520.16, intron 4 of 5) protein_coding-intron (ENSMUSG00000027520.16, intron 4 of 6) -11576 ENSMUSG00000092705.1 ENSMUSG00000092705 ENSMUST00000174964 Gm24513 miRNA Interval_14026 chr10 25676629 25676910 + 0 NA Intergenic Intergenic 31174 ENSMUSG00000112803.1 ENSMUSG00000112803 ENSMUST00000217933 Gm36543 lincRNA Interval_46195 chr13 62408546 62409002 + 0 NA promoter-TSS (ENSMUSG00000113623.1) transcribed_processed_pseudogene-promoter-TSS (ENSMUSG00000113623.1) -896 ENSMUSG00000113623.1 ENSMUSG00000113623 ENSMUST00000221446 Gm48691 transcribed_processed_pseudogene Interval_171360 chr9 116990229 116990683 + 0 NA intron (ENSMUSG00000039607.17, intron 5 of 15) protein_coding-intron (ENSMUSG00000039607.17, intron 3 of 12) -68702 ENSMUSG00000092184.1 ENSMUSG00000092184 ENSMUST00000172565 Gm18489 processed_pseudogene Interval_99652 chr2 163964613 163965114 + 0 NA Intergenic Intergenic -30640 ENSMUSG00000018326.9 ENSMUSG00000018326 ENSMUST00000131288 Ywhab protein_coding Interval_149655 chr7 100435674 100436141 + 0 NA exon (ENSMUSG00000047248.20, exon 24 of 33) protein_coding-exon (ENSMUSG00000047248.20, exon 24 of 33) -22553 ENSMUSG00000102241.1 ENSMUSG00000102241 ENSMUST00000193553 Gm37716 TEC Interval_46052 chr13 60615104 60616959 + 0 NA intron (ENSMUSG00000021559.14, intron 2 of 26) protein_coding-intron (ENSMUSG00000021559.14, intron 2 of 26) -6936 ENSMUSG00000114501.1 ENSMUSG00000114501 ENSMUST00000225376 Gm48582 TEC Interval_45803 chr13 58176329 58176870 + 0 NA TTS (ENSMUSG00000005312.15) protein_coding-TTS (ENSMUSG00000005312.15) 5026 ENSMUSG00000005312.15 ENSMUSG00000005312 ENSMUST00000225645 Ubqln1 protein_coding Interval_63037 chr15 98772213 98773196 + 0 NA exon (ENSMUSG00000022996.15, exon 5 of 5) protein_coding-exon (ENSMUSG00000022996.15, exon 5 of 5) 4325 ENSMUSG00000022996.15 ENSMUSG00000022996 ENSMUST00000226846 Wnt10b protein_coding Interval_98961 chr2 156350662 156351491 + 0 NA intron (ENSMUSG00000038085.13, intron 8 of 12) protein_coding-intron (ENSMUSG00000038085.13, intron 8 of 12) -3236 ENSMUSG00000082321.3 ENSMUSG00000082321 ENSMUST00000122112 Gm14253 processed_pseudogene Interval_77313 chr17 87981666 87982751 + 0 NA intron (ENSMUSG00000005370.4, intron 2 of 3) protein_coding-intron (ENSMUSG00000005370.4, intron 2 of 9) 7113 ENSMUSG00000005370.4 ENSMUSG00000005370 ENSMUST00000234756 Msh6 protein_coding Interval_163315 chr9 20812598 20813398 + 0 NA intron (ENSMUSG00000004098.7, intron 1 of 41) protein_coding-intron (ENSMUSG00000004098.7, intron 1 of 66) 2069 ENSMUSG00000004098.7 ENSMUSG00000004098 ENSMUST00000145974 Col5a3 protein_coding Interval_63800 chr15 103518830 103520394 + 0 NA intron (ENSMUSG00000022489.6, intron 1 of 14) protein_coding-intron (ENSMUSG00000022489.6, intron 2 of 15) 4692 ENSMUSG00000022489.6 ENSMUSG00000022489 ENSMUST00000227925 Pde1b protein_coding Interval_34767 chr12 10589263 10590080 + 0 NA Intergenic Intergenic 96171 ENSMUSG00000112127.1 ENSMUSG00000112127 ENSMUST00000219091 Gm48886 processed_pseudogene Interval_18117 chr10 82768659 82769608 + 0 NA TTS (ENSMUSG00000112107.1) processed_pseudogene-TTS (ENSMUSG00000112107.1) 772 ENSMUSG00000112107.1 ENSMUSG00000112107 ENSMUST00000218794 Gm47560 processed_pseudogene Interval_79751 chr18 34897452 34898581 + 0 NA Intergenic Intergenic 33991 ENSMUSG00000024360.8 ENSMUSG00000024360 ENSMUST00000025218 Etf1 protein_coding Interval_74888 chr17 57078196 57080400 + 0 NA promoter-TSS (ENSMUSG00000002668.8) protein_coding-promoter-TSS (ENSMUSG00000002668.8) -7501 ENSMUSG00000002668.8 ENSMUSG00000002668 ENSMUST00000232938 Dennd1c protein_coding Interval_111460 chr4 21797869 21799660 + 0 NA TTS (ENSMUSG00000040455.17) protein_coding-TTS (ENSMUSG00000040455.17) -31552 ENSMUSG00000028251.5 ENSMUSG00000028251 ENSMUST00000029915 Tstd3 protein_coding Interval_103616 chr3 51208173 51210871 + 0 NA Intergenic Intergenic -22395 ENSMUSG00000103313.1 ENSMUSG00000103313 ENSMUST00000195382 Gm38357 TEC Interval_60162 chr15 66778733 66779120 + 0 NA intron (ENSMUSG00000053469.14, intron 11 of 17) protein_coding-intron (ENSMUSG00000053469.14, intron 41 of 47) 22667 ENSMUSG00000022372.14 ENSMUSG00000022372 ENSMUST00000164939 Sla protein_coding Interval_27785 chr11 69997023 69997565 + 0 NA exon (ENSMUSG00000018572.10, exon 1 of 4) protein_coding-exon (ENSMUSG00000018572.10, exon 1 of 4) 303 ENSMUSG00000018572.10 ENSMUSG00000018572 ENSMUST00000135814 Phf23 protein_coding Interval_104065 chr3 58019986 58021167 + 0 NA Intergenic Intergenic 58382 ENSMUSG00000106246.1 ENSMUSG00000106246 ENSMUST00000198022 Gm18867 processed_pseudogene Interval_53707 chr14 61037380 61039077 + 0 NA promoter-TSS (ENSMUSG00000060548.13) protein_coding-promoter-TSS (ENSMUSG00000060548.13) -337 ENSMUSG00000060548.13 ENSMUSG00000060548 ENSMUST00000225730 Tnfrsf19 protein_coding Interval_51819 chr14 32482249 32482861 + 0 NA intron (ENSMUSG00000097794.2, intron 1 of 1) antisense-intron (ENSMUSG00000097794.2, intron 1 of 1) -16598 ENSMUSG00000021919.8 ENSMUSG00000021919 ENSMUST00000228511 Chat protein_coding Interval_122459 chr5 23024546 23025220 + 0 NA intron (ENSMUSG00000106379.1, intron 1 of 3) protein_coding-intron (ENSMUSG00000106379.1, intron 1 of 3) -92870 ENSMUSG00000060879.3 ENSMUSG00000060879 ENSMUST00000075377 Gm6564 processed_pseudogene Interval_56972 chr14 124412185 124412694 + 0 NA intron (ENSMUSG00000025551.13, intron 1 of 4) protein_coding-intron (ENSMUSG00000025551.13, intron 1 of 4) 13748 ENSMUSG00000115472.1 ENSMUSG00000115472 ENSMUST00000228023 Gm49070 processed_pseudogene Interval_111858 chr4 32028077 32028418 + 0 NA Intergenic Intergenic -23491 ENSMUSG00000082398.1 ENSMUSG00000082398 ENSMUST00000118472 Gm11927 processed_pseudogene Interval_442 chr1 5320445 5320629 + 0 NA Intergenic Intergenic 12798 ENSMUSG00000104046.1 ENSMUSG00000104046 ENSMUST00000193241 Gm37567 TEC Interval_18097 chr10 82361882 82362745 + 0 NA intron (ENSMUSG00000073427.4, intron 1 of 4) protein_coding-intron (ENSMUSG00000073427.4, intron 1 of 7) 8058 ENSMUSG00000073427.4 ENSMUSG00000073427 ENSMUST00000165906 Gm4924 protein_coding Interval_14149 chr10 28110559 28110818 + 0 NA intron (ENSMUSG00000019889.10, intron 1 of 2) protein_coding-intron (ENSMUSG00000019889.10, intron 1 of 31) -44498 ENSMUSG00000112432.1 ENSMUSG00000112432 ENSMUST00000218855 Gm18507 processed_pseudogene Interval_12901 chr10 7899644 7900134 + 0 NA Intergenic Intergenic -51408 ENSMUSG00000088857.1 ENSMUSG00000088857 ENSMUST00000158232 Gm24726 snoRNA Interval_94211 chr2 85135840 85136773 + 0 NA promoter-TSS (ENSMUSG00000044338.9) protein_coding-promoter-TSS (ENSMUSG00000044338.9) -1086 ENSMUSG00000044338.9 ENSMUSG00000044338 ENSMUST00000184728 Aplnr protein_coding Interval_21821 chr11 4569740 4570058 + 0 NA intron (ENSMUSG00000034354.17, intron 1 of 17) protein_coding-intron (ENSMUSG00000034354.17, intron 1 of 17) 8119 ENSMUSG00000081974.3 ENSMUSG00000081974 ENSMUST00000122068 Gm11960 transcribed_processed_pseudogene Interval_151160 chr7 118912605 118913012 + 0 NA intron (ENSMUSG00000073856.11, intron 5 of 7) protein_coding-intron (ENSMUSG00000073856.11, intron 6 of 8) 56878 ENSMUSG00000109517.1 ENSMUSG00000109517 ENSMUST00000208287 Gm44763 antisense Interval_16924 chr10 69939901 69940260 + 0 NA intron (ENSMUSG00000069601.14, intron 26 of 42) protein_coding-intron (ENSMUSG00000069601.14, intron 1 of 16) -234931 ENSMUSG00000048701.13 ENSMUSG00000048701 ENSMUST00000135607 Ccdc6 protein_coding Interval_94656 chr2 93068639 93069298 + 0 NA Intergenic Intergenic -23397 ENSMUSG00000075028.12 ENSMUSG00000075028 ENSMUST00000147339 Prdm11 protein_coding Interval_78506 chr18 13809926 13811101 + 0 NA intron (ENSMUSG00000024420.9, intron 2 of 5) protein_coding-intron (ENSMUSG00000024420.9, intron 5 of 7) 65813 ENSMUSG00000024420.9 ENSMUSG00000024420 ENSMUST00000234025 Zfp521 protein_coding Interval_65959 chr16 30539191 30541285 + 0 NA intron (ENSMUSG00000022537.18, intron 2 of 2) protein_coding-intron (ENSMUSG00000022537.18, intron 7 of 11) 3259 ENSMUSG00000022537.18 ENSMUSG00000022537 ENSMUST00000153380 Tmem44 protein_coding Interval_169687 chr9 100387124 100387817 + 0 NA intron (ENSMUSG00000111258.1, intron 3 of 4) lincRNA-intron (ENSMUSG00000111258.1, intron 3 of 4) 4381 ENSMUSG00000111258.1 ENSMUSG00000111258 ENSMUST00000213192 Gm34397 lincRNA Interval_18448 chr10 86077213 86077485 + 0 NA intron (ENSMUSG00000059602.14, intron 8 of 8) protein_coding-intron (ENSMUSG00000059602.14, intron 8 of 13) -18510 ENSMUSG00000112493.1 ENSMUSG00000112493 ENSMUST00000218077 4930486F22Rik antisense Interval_79889 chr18 35757335 35758411 + 0 NA Intergenic Intergenic -12445 ENSMUSG00000091842.2 ENSMUSG00000091842 ENSMUST00000165299 Gm16490 processed_pseudogene Interval_96021 chr2 119229515 119230923 + 0 NA promoter-TSS (ENSMUSG00000027317.8) protein_coding-promoter-TSS (ENSMUSG00000027317.8) -354 ENSMUSG00000027317.8 ENSMUSG00000027317 ENSMUST00000110820 Ppp1r14d protein_coding Interval_145394 chr7 34450228 34450836 + 0 NA intron (ENSMUSG00000085124.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000085124.1, intron 1 of 2) 12395 ENSMUSG00000085124.1 ENSMUSG00000085124 ENSMUST00000140298 Gm12766 lincRNA Interval_117587 chr4 124860608 124862842 + 0 NA exon (ENSMUSG00000042763.9, exon 1 of 4) protein_coding-exon (ENSMUSG00000042763.9, exon 1 of 4) 446 ENSMUSG00000042763.9 ENSMUSG00000042763 ENSMUST00000064444 Maneal protein_coding Interval_38243 chr12 76596267 76596790 + 0 NA exon (ENSMUSG00000021061.15, exon 32 of 32) protein_coding-exon (ENSMUSG00000021061.15, exon 32 of 32) -12442 ENSMUSG00000021061.15 ENSMUSG00000021061 ENSMUST00000166101 Sptb protein_coding Interval_64011 chr16 5243594 5244993 + 0 NA TTS (ENSMUSG00000022544.14) protein_coding-TTS (ENSMUSG00000022544.14) -10493 ENSMUSG00000087168.1 ENSMUSG00000087168 ENSMUST00000140000 Gm15983 antisense Interval_161685 chr8 122043344 122043746 + 0 NA intron (ENSMUSG00000092329.1, intron 1 of 15) protein_coding-intron (ENSMUSG00000092329.1, intron 1 of 15) 65521 ENSMUSG00000099140.1 ENSMUSG00000099140 ENSMUST00000184699 Mir7237 miRNA Interval_21193 chr10 127136559 127137674 + 0 NA Intergenic Intergenic 1501 ENSMUSG00000088672.1 ENSMUSG00000088672 ENSMUST00000158047 Gm23664 snRNA Interval_43079 chr13 23700980 23701579 + 0 NA TTS (ENSMUSG00000006611.15) protein_coding-TTS (ENSMUSG00000006611.15) -2825 ENSMUSG00000060678.5 ENSMUSG00000060678 ENSMUST00000102967 H4c3 protein_coding Interval_18500 chr10 86761173 86763258 + 0 NA intron (ENSMUSG00000044937.15, intron 5 of 7) protein_coding-intron (ENSMUSG00000044937.15, intron 13 of 15) -1757 ENSMUSG00000112743.1 ENSMUSG00000112743 ENSMUST00000218802 Gm49358 protein_coding Interval_154372 chr8 15068824 15069521 + 0 NA intron (ENSMUSG00000031461.4, intron 3 of 5) protein_coding-intron (ENSMUSG00000031461.4, intron 3 of 36) 22960 ENSMUSG00000109965.1 ENSMUSG00000109965 ENSMUST00000209938 Gm45274 lincRNA Interval_20765 chr10 120842897 120843132 + 0 NA intron (ENSMUSG00000051236.13, intron 2 of 5) protein_coding-intron (ENSMUSG00000051236.13, intron 4 of 6) 7454 ENSMUSG00000051236.13 ENSMUSG00000051236 ENSMUST00000130950 Msrb3 protein_coding Interval_85946 chr19 33786382 33786652 + 0 NA intron (ENSMUSG00000079342.11, intron 1 of 8) protein_coding-intron (ENSMUSG00000079342.11, intron 1 of 8) 942 ENSMUSG00000079342.11 ENSMUSG00000079342 ENSMUST00000148137 Lipo1 protein_coding Interval_46221 chr13 62684136 62685414 + 0 NA intron (ENSMUSG00000074863.5, intron 3 of 5) protein_coding-intron (ENSMUSG00000074863.5, intron 4 of 6) -2274 ENSMUSG00000113601.1 ENSMUSG00000113601 ENSMUST00000222614 Gm48735 TEC Interval_92349 chr2 59186295 59188379 + 0 NA intron (ENSMUSG00000026991.20, intron 1 of 4) protein_coding-intron (ENSMUSG00000026991.20, intron 1 of 21) 25410 ENSMUSG00000026991.20 ENSMUSG00000026991 ENSMUST00000124127 Pkp4 protein_coding Interval_69581 chr16 94407702 94407946 + 0 NA intron (ENSMUSG00000040785.19, intron 10 of 40) protein_coding-intron (ENSMUSG00000040785.19, intron 11 of 45) -21249 ENSMUSG00000075829.1 ENSMUSG00000075829 ENSMUST00000101881 Gm23692 snRNA Interval_39444 chr12 87434528 87435482 + 0 NA intron (ENSMUSG00000079036.10, intron 2 of 4) protein_coding-intron (ENSMUSG00000079036.10, intron 2 of 4) 2752 ENSMUSG00000105428.1 ENSMUSG00000105428 ENSMUST00000197755 Mir3068 miRNA Interval_153415 chr7 144553052 144554384 + 0 NA promoter-TSS (ENSMUSG00000037519.17) protein_coding-promoter-TSS (ENSMUSG00000037519.17) -13637 ENSMUSG00000073778.2 ENSMUSG00000073778 ENSMUST00000097928 Faddos antisense Interval_114217 chr4 68388210 68388695 + 0 NA Intergenic Intergenic -66491 ENSMUSG00000086790.1 ENSMUSG00000086790 ENSMUST00000140639 Gm12911 lincRNA Interval_29727 chr11 86426859 86427509 + 0 NA Intergenic Intergenic 10231 ENSMUSG00000064526.1 ENSMUSG00000064526 ENSMUST00000082592 Gm26439 snRNA Interval_73136 chr17 35014782 35017388 + 0 NA promoter-TSS (ENSMUSG00000007030.8) protein_coding-promoter-TSS (ENSMUSG00000007030.8) -553 ENSMUSG00000007030.8 ENSMUSG00000007030 ENSMUST00000172499 Vwa7 protein_coding Interval_122259 chr5 20750739 20751436 + 0 NA Intergenic Intergenic 22693 ENSMUSG00000105036.1 ENSMUSG00000105036 ENSMUST00000200372 1110060G06Rik TEC Interval_149355 chr7 97655917 97656381 + 0 NA intron (ENSMUSG00000035623.14, intron 5 of 14) protein_coding-intron (ENSMUSG00000035623.14, intron 5 of 15) -1131 ENSMUSG00000035623.14 ENSMUSG00000035623 ENSMUST00000135270 Rsf1 protein_coding Interval_93302 chr2 71793671 71794603 + 0 NA intron (ENSMUSG00000027111.16, intron 1 of 25) protein_coding-intron (ENSMUSG00000027111.16, intron 1 of 25) 6998 ENSMUSG00000027111.16 ENSMUSG00000027111 ENSMUST00000139760 Itga6 protein_coding Interval_127856 chr5 108283755 108284595 + 0 NA Intergenic Intergenic 7255 ENSMUSG00000029265.4 ENSMUSG00000029265 ENSMUST00000154862 Dr1 protein_coding Interval_31251 chr11 99123574 99124724 + 0 NA Intergenic Intergenic 30928 ENSMUSG00000037944.8 ENSMUSG00000037944 ENSMUST00000103134 Ccr7 protein_coding Interval_44900 chr13 49559107 49559372 + 0 NA exon (ENSMUSG00000021391.10, exon 6 of 6) protein_coding-exon (ENSMUSG00000021391.10, exon 6 of 6) 14796 ENSMUSG00000021388.14 ENSMUSG00000021388 ENSMUST00000021820 Aspn protein_coding Interval_148182 chr7 79681862 79682074 + 0 NA intron (ENSMUSG00000046591.10, intron 10 of 20) protein_coding-intron (ENSMUSG00000046591.10, intron 10 of 21) 11047 ENSMUSG00000046591.10 ENSMUSG00000046591 ENSMUST00000206677 Ticrr protein_coding Interval_16659 chr10 66890568 66890940 + 0 NA intron (ENSMUSG00000112267.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000112267.1, intron 1 of 1) 858 ENSMUSG00000112267.1 ENSMUSG00000112267 ENSMUST00000217953 Gm47903 lincRNA Interval_7435 chr1 131299428 131299901 + 0 NA intron (ENSMUSG00000026425.15, intron 8 of 10) protein_coding-intron (ENSMUSG00000026425.15, intron 19 of 22) -29120 ENSMUSG00000042349.13 ENSMUSG00000042349 ENSMUST00000159195 Ikbke protein_coding Interval_138389 chr6 87805815 87806032 + 0 NA exon (ENSMUSG00000108120.1, exon 1 of 1) TEC-exon (ENSMUSG00000108120.1, exon 1 of 1) 413 ENSMUSG00000108120.1 ENSMUSG00000108120 ENSMUST00000203027 9930120I10Rik TEC Interval_110953 chr4 10826970 10827803 + 0 NA Intergenic Intergenic 13843 ENSMUSG00000083997.1 ENSMUSG00000083997 ENSMUST00000121818 Gm12920 processed_pseudogene Interval_89795 chr2 25496432 25496800 + 0 NA Intergenic Intergenic -3184 ENSMUSG00000026943.12 ENSMUSG00000026943 ENSMUST00000114245 Lcn12 protein_coding Interval_163603 chr9 22467307 22468755 + 0 NA exon (ENSMUSG00000032239.10, exon 1 of 1) protein_coding-exon (ENSMUSG00000032239.10, exon 1 of 1) 139 ENSMUSG00000032239.10 ENSMUSG00000032239 ENSMUST00000214005 Rp9 protein_coding Interval_85500 chr19 27557167 27557940 + 0 NA Intergenic Intergenic 45045 ENSMUSG00000118072.1 ENSMUSG00000118072 ENSMUST00000235994 Gm50101 processed_pseudogene Interval_22358 chr11 9086778 9087014 + 0 NA Intergenic Intergenic -31891 ENSMUSG00000020407.13 ENSMUSG00000020407 ENSMUST00000146696 Upp1 protein_coding Interval_62146 chr15 88146234 88147412 + 0 NA Intergenic Intergenic 73079 ENSMUSG00000116350.1 ENSMUSG00000116350 ENSMUST00000230760 Gm35772 lincRNA Interval_171765 chr9 120877320 120877655 + 0 NA Intergenic Intergenic 4485 ENSMUSG00000111528.1 ENSMUSG00000111528 ENSMUST00000215728 Gm39460 lincRNA Interval_52242 chr14 40966094 40967792 + 0 NA promoter-TSS (ENSMUSG00000037824.6) protein_coding-promoter-TSS (ENSMUSG00000037824.6) -32627 ENSMUSG00000037824.6 ENSMUSG00000037824 ENSMUST00000224349 Tspan14 protein_coding Interval_1030 chr1 14225292 14226592 + 0 NA intron (ENSMUSG00000025932.14, intron 10 of 16) protein_coding-intron (ENSMUSG00000025932.14, intron 11 of 17) 30048 ENSMUSG00000102588.1 ENSMUSG00000102588 ENSMUST00000193605 Gm37444 TEC Interval_128152 chr5 111341398 111342030 + 0 NA intron (ENSMUSG00000050017.11, intron 3 of 10) protein_coding-intron (ENSMUSG00000050017.11, intron 3 of 11) 10907 ENSMUSG00000050017.11 ENSMUSG00000050017 ENSMUST00000198137 Pitpnb protein_coding Interval_47385 chr13 82764586 82764864 + 0 NA Intergenic Intergenic -66392 ENSMUSG00000106655.1 ENSMUSG00000106655 ENSMUST00000198795 Mir3961 miRNA Interval_159668 chr8 96393346 96393586 + 0 NA intron (ENSMUSG00000110633.1, intron 1 of 5) lincRNA-intron (ENSMUSG00000110633.1, intron 1 of 5) 10396 ENSMUSG00000110633.1 ENSMUSG00000110633 ENSMUST00000212119 Gm32122 lincRNA Interval_43438 chr13 30949240 30949535 + 0 NA intron (ENSMUSG00000021357.14, intron 1 of 28) protein_coding-intron (ENSMUSG00000021357.14, intron 1 of 27) -1628 ENSMUSG00000076430.1 ENSMUSG00000076430 ENSMUST00000102943 Hus1b protein_coding Interval_162907 chr9 12739555 12740835 + 0 NA Intergenic Intergenic -39970 ENSMUSG00000089477.1 ENSMUSG00000089477 ENSMUST00000158852 Gm25365 rRNA Interval_49006 chr13 106863033 106863512 + 0 NA intron (ENSMUSG00000042590.17, intron 20 of 29) protein_coding-intron (ENSMUSG00000042590.17, intron 21 of 29) 11372 ENSMUSG00000100833.1 ENSMUSG00000100833 ENSMUST00000191363 Gm28988 antisense Interval_60163 chr15 66816200 66816395 + 0 NA intron (ENSMUSG00000022372.14, intron 1 of 8) protein_coding-intron (ENSMUSG00000053469.14, intron 41 of 47) -14704 ENSMUSG00000022372.14 ENSMUSG00000022372 ENSMUST00000164939 Sla protein_coding Interval_149849 chr7 101983242 101983494 + 0 NA intron (ENSMUSG00000066306.13, intron 2 of 8) protein_coding-intron (ENSMUSG00000066306.13, intron 2 of 24) -3108 ENSMUSG00000110287.1 ENSMUSG00000110287 ENSMUST00000210584 Gm45313 processed_pseudogene Interval_124792 chr5 54113484 54113690 + 0 NA intron (ENSMUSG00000039156.19, intron 11 of 12) protein_coding-intron (ENSMUSG00000039156.19, intron 10 of 11) -2270 ENSMUSG00000039156.19 ENSMUSG00000039156 ENSMUST00000202342 Stim2 protein_coding Interval_100906 chr2 173270199 173270481 + 0 NA intron (ENSMUSG00000038400.15, intron 1 of 3) protein_coding-intron (ENSMUSG00000038400.15, intron 1 of 3) 5849 ENSMUSG00000038400.15 ENSMUSG00000038400 ENSMUST00000124124 Pmepa1 protein_coding Interval_24287 chr11 32128310 32128570 + 0 NA Intergenic Intergenic -27212 ENSMUSG00000086386.1 ENSMUSG00000086386 ENSMUST00000145338 Gm12108 lincRNA Interval_28770 chr11 78209333 78209666 + 0 NA exon (ENSMUSG00000002052.6, exon 33 of 37) protein_coding-exon (ENSMUSG00000002052.6, exon 33 of 37) 14187 ENSMUSG00000002052.6 ENSMUSG00000002052 ENSMUST00000108314 Supt6 protein_coding Interval_157605 chr8 71675865 71676739 + 0 NA promoter-TSS (ENSMUSG00000031805.17) protein_coding-promoter-TSS (ENSMUSG00000031805.17) -250 ENSMUSG00000031805.17 ENSMUSG00000031805 ENSMUST00000130624 Jak3 protein_coding Interval_60789 chr15 76770117 76771118 + 0 NA intron (ENSMUSG00000033697.16, intron 1 of 2) protein_coding-intron (ENSMUSG00000033697.16, intron 1 of 11) -27079 ENSMUSG00000090429.3 ENSMUSG00000090429 ENSMUST00000165535 Gm17271 processed_pseudogene Interval_72500 chr17 30222088 30223639 + 0 NA intron (ENSMUSG00000062202.14, intron 7 of 7) protein_coding-intron (ENSMUSG00000062202.14, intron 10 of 11) 45388 ENSMUSG00000117974.1 ENSMUSG00000117974 ENSMUST00000236459 Tuba-rs1 transcribed_processed_pseudogene Interval_92405 chr2 59571709 59572086 + 0 NA Intergenic Intergenic -7213 ENSMUSG00000081157.1 ENSMUSG00000081157 ENSMUST00000118837 Gm13552 processed_pseudogene Interval_102192 chr3 19310437 19311897 + 0 NA promoter-TSS (ENSMUSG00000069094.12) protein_coding-promoter-TSS (ENSMUSG00000069094.12) -115 ENSMUSG00000069094.12 ENSMUSG00000069094 ENSMUST00000143120 Pde7a protein_coding Interval_139717 chr6 108064768 108065881 + 0 NA intron (ENSMUSG00000034639.7, intron 1 of 1) protein_coding-intron (ENSMUSG00000034639.7, intron 1 of 1) 262 ENSMUSG00000034639.7 ENSMUSG00000034639 ENSMUST00000138140 Setmar protein_coding Interval_135274 chr6 37972846 37973751 + 0 NA Intergenic Intergenic 45313 ENSMUSG00000029830.15 ENSMUSG00000029830 ENSMUST00000040486 Svopl protein_coding Interval_171778 chr9 120990355 120990751 + 0 NA intron (ENSMUSG00000040936.15, intron 1 of 2) protein_coding-intron (ENSMUSG00000040936.15, intron 1 of 2) -30046 ENSMUSG00000040936.15 ENSMUSG00000040936 ENSMUST00000164969 Ulk4 protein_coding Interval_117378 chr4 123331297 123332598 + 0 NA intron (ENSMUSG00000032726.12, intron 1 of 6) protein_coding-intron (ENSMUSG00000032726.12, intron 1 of 6) -8313 ENSMUSG00000076436.1 ENSMUSG00000076436 ENSMUST00000102640 Oxct2a protein_coding Interval_39003 chr12 84395123 84396592 + 0 NA intron (ENSMUSG00000021236.16, intron 3 of 14) protein_coding-intron (ENSMUSG00000021236.16, intron 3 of 14) 13127 ENSMUSG00000021236.16 ENSMUSG00000021236 ENSMUST00000136511 Entpd5 protein_coding Interval_75327 chr17 65876672 65877444 + 0 NA intron (ENSMUSG00000024096.17, intron 1 of 9) protein_coding-intron (ENSMUSG00000024096.17, intron 1 of 9) 7345 ENSMUSG00000024096.17 ENSMUSG00000024096 ENSMUST00000233784 Ralbp1 protein_coding Interval_79415 chr18 31740216 31740735 + 0 NA Intergenic Intergenic 1760 ENSMUSG00000117533.1 ENSMUSG00000117533 ENSMUST00000234849 Gm50060 processed_pseudogene Interval_73730 chr17 43035520 43037609 + 0 NA intron (ENSMUSG00000023915.5, intron 1 of 1) protein_coding-intron (ENSMUSG00000023915.5, intron 1 of 5) 19996 ENSMUSG00000023915.5 ENSMUSG00000023915 ENSMUST00000233482 Tnfrsf21 protein_coding Interval_171869 chr9 121890515 121890814 + 0 NA Intergenic Intergenic -15600 ENSMUSG00000044534.8 ENSMUSG00000044534 ENSMUST00000216326 Ackr2 protein_coding Interval_40659 chr12 106536209 106536687 + 0 NA Intergenic Intergenic 9878 ENSMUSG00000091887.1 ENSMUSG00000091887 ENSMUST00000163501 Gm17053 processed_pseudogene Interval_141557 chr6 129236888 129238560 + 0 NA promoter-TSS (ENSMUSG00000112144.1) lincRNA-promoter-TSS (ENSMUSG00000112144.1) 267 ENSMUSG00000097354.7 ENSMUSG00000097354 ENSMUST00000204328 2310001H17Rik lincRNA Interval_41311 chr12 112629005 112630210 + 0 NA intron (ENSMUSG00000011148.14, intron 2 of 3) protein_coding-intron (ENSMUSG00000011148.14, intron 2 of 12) 9530 ENSMUSG00000011148.14 ENSMUSG00000011148 ENSMUST00000221720 Adssl1 protein_coding Interval_75602 chr17 69232037 69232230 + 0 NA intron (ENSMUSG00000024044.19, intron 3 of 21) protein_coding-intron (ENSMUSG00000024044.19, intron 3 of 21) 45075 ENSMUSG00000100572.1 ENSMUSG00000100572 ENSMUST00000187090 2410021H03Rik antisense Interval_108010 chr3 119778476 119778687 + 0 NA intron (ENSMUSG00000028134.11, intron 2 of 13) protein_coding-intron (ENSMUSG00000028134.11, intron 2 of 13) 5223 ENSMUSG00000028134.11 ENSMUSG00000028134 ENSMUST00000198403 Ptbp2 protein_coding Interval_78937 chr18 22204158 22204346 + 0 NA Intergenic Intergenic -32810 ENSMUSG00000024306.13 ENSMUSG00000024306 ENSMUST00000234661 Ccdc178 protein_coding Interval_73816 chr17 44075254 44076428 + 0 NA Intergenic Intergenic -2972 ENSMUSG00000023960.13 ENSMUSG00000023960 ENSMUST00000126032 Enpp5 protein_coding Interval_166550 chr9 60826285 60827083 + 0 NA intron (ENSMUSG00000052143.8, intron 1 of 1) protein_coding-intron (ENSMUSG00000034485.10, intron 1 of 18) 11515 ENSMUSG00000052143.8 ENSMUSG00000052143 ENSMUST00000063858 Gm9869 antisense Interval_155586 chr8 34874918 34876068 + 0 NA intron (ENSMUSG00000031529.5, intron 1 of 22) protein_coding-intron (ENSMUSG00000031529.5, intron 5 of 26) 43275 ENSMUSG00000031529.5 ENSMUSG00000031529 ENSMUST00000211065 Tnks protein_coding Interval_34238 chr11 121535643 121535970 + 0 NA intron (ENSMUSG00000039230.14, intron 3 of 9) protein_coding-intron (ENSMUSG00000039230.14, intron 13 of 38) -16473 ENSMUSG00000039238.6 ENSMUSG00000039238 ENSMUST00000092298 Zfp750 protein_coding Interval_62956 chr15 98160618 98161691 + 0 NA intron (ENSMUSG00000048175.13, intron 1 of 3) protein_coding-intron (ENSMUSG00000048175.13, intron 2 of 4) 4471 ENSMUSG00000048175.13 ENSMUSG00000048175 ENSMUST00000123922 Asb8 protein_coding Interval_130724 chr5 129993143 129993446 + 0 NA intron (ENSMUSG00000025534.17, intron 9 of 10) protein_coding-intron (ENSMUSG00000025534.17, intron 10 of 11) 9534 ENSMUSG00000025534.17 ENSMUSG00000025534 ENSMUST00000122994 Gusb protein_coding Interval_116181 chr4 108430821 108431025 + 0 NA Intergenic Intergenic 20419 ENSMUSG00000083255.1 ENSMUSG00000083255 ENSMUST00000122349 Gm12738 processed_pseudogene Interval_41806 chr12 119722310 119722590 + 0 NA Intergenic Intergenic 112532 ENSMUSG00000113091.1 ENSMUSG00000113091 ENSMUST00000223175 Gm9279 processed_pseudogene Interval_129798 chr5 122418433 122418640 + 0 NA Intergenic Intergenic 10046 ENSMUSG00000105895.1 ENSMUSG00000105895 ENSMUST00000198417 Gm42829 sense_intronic Interval_146135 chr7 44273592 44274493 + 0 NA Intergenic Intergenic -5326 ENSMUSG00000108705.1 ENSMUSG00000108705 ENSMUST00000205454 Gm18905 processed_pseudogene Interval_71583 chr17 24677375 24678220 + 0 NA intron (ENSMUSG00000041130.10, intron 2 of 8) protein_coding-intron (ENSMUSG00000041130.10, intron 4 of 11) 655 ENSMUSG00000041130.10 ENSMUSG00000041130 ENSMUST00000234988 Zfp598 protein_coding Interval_71709 chr17 25602263 25602858 + 0 NA intron (ENSMUSG00000002279.19, intron 3 of 4) protein_coding-intron (ENSMUSG00000002279.19, intron 2 of 10) 23240 ENSMUSG00000002279.19 ENSMUSG00000002279 ENSMUST00000156868 Lmf1 protein_coding Interval_101494 chr2 181952215 181953643 + 0 NA Intergenic Intergenic -38200 ENSMUSG00000098505.3 ENSMUSG00000098505 ENSMUST00000184507 Gm14496 protein_coding Interval_164528 chr9 37761724 37762795 + 0 NA Intergenic Intergenic -9598 ENSMUSG00000058628.4 ENSMUSG00000058628 ENSMUST00000080634 Olfr875 protein_coding Interval_118229 chr4 129633708 129634411 + 0 NA TTS (ENSMUSG00000053841.15) protein_coding-TTS (ENSMUSG00000053841.15) 6919 ENSMUSG00000053841.15 ENSMUSG00000053841 ENSMUST00000130017 Txlna protein_coding Interval_8920 chr1 152218487 152219089 + 0 NA Intergenic Intergenic 73740 ENSMUSG00000103744.1 ENSMUSG00000103744 ENSMUST00000194334 Gm38238 TEC Interval_153202 chr7 142373804 142374244 + 0 NA promoter-TSS (ENSMUSG00000045777.14) protein_coding-promoter-TSS (ENSMUSG00000045777.14) -1755 ENSMUSG00000045777.14 ENSMUSG00000045777 ENSMUST00000123543 Ifitm10 protein_coding Interval_125876 chr5 75216283 75216547 + 0 NA Intergenic Intergenic -30028 ENSMUSG00000106704.1 ENSMUSG00000106704 ENSMUST00000201331 Gm42799 processed_pseudogene Interval_145715 chr7 37625865 37626115 + 0 NA intron (ENSMUSG00000043456.17, intron 3 of 3) protein_coding-intron (ENSMUSG00000043456.17, intron 3 of 5) 36648 ENSMUSG00000108572.1 ENSMUSG00000108572 ENSMUST00000206063 Gm44883 TEC Interval_50981 chr14 21473902 21475451 + 0 NA Intergenic Intergenic -1316 ENSMUSG00000114875.1 ENSMUSG00000114875 ENSMUST00000225719 Gm30363 processed_transcript Interval_124011 chr5 37184777 37185175 + 0 NA promoter-TSS (ENSMUSG00000117286.1) protein_coding-promoter-TSS (ENSMUSG00000117286.1) -62309 ENSMUSG00000029121.16 ENSMUSG00000029121 ENSMUST00000200834 Crmp1 protein_coding Interval_23838 chr11 26995791 26996976 + 0 NA Intergenic Intergenic -55314 ENSMUSG00000083895.1 ENSMUSG00000083895 ENSMUST00000120189 Gm12074 processed_pseudogene Interval_152502 chr7 133611730 133612300 + 0 NA intron (ENSMUSG00000109917.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000109917.1, intron 1 of 1) 3789 ENSMUSG00000109917.1 ENSMUSG00000109917 ENSMUST00000210229 Gm45671 lincRNA Interval_90092 chr2 27934360 27934561 + 0 NA intron (ENSMUSG00000026837.16, intron 4 of 65) protein_coding-intron (ENSMUSG00000026837.16, intron 4 of 65) -47408 ENSMUSG00000085766.1 ENSMUSG00000085766 ENSMUST00000154246 2810430I11Rik processed_transcript Interval_129083 chr5 117318697 117319732 + 0 NA promoter-TSS (ENSMUSG00000066894.14) protein_coding-promoter-TSS (ENSMUSG00000066894.14) 30 ENSMUSG00000072688.2 ENSMUSG00000072688 ENSMUST00000100834 Gm10399 antisense Interval_47887 chr13 94171227 94171955 + 0 NA intron (ENSMUSG00000045312.12, intron 1 of 1) protein_coding-intron (ENSMUSG00000045312.12, intron 2 of 3) -31474 ENSMUSG00000087319.1 ENSMUSG00000087319 ENSMUST00000134284 Gm15907 lincRNA Interval_106208 chr3 94611165 94612167 + 0 NA Intergenic Intergenic -6882 ENSMUSG00000062896.3 ENSMUSG00000062896 ENSMUST00000119898 Rpl31-ps11 processed_pseudogene Interval_137857 chr6 82984374 82984600 + 0 NA intron (ENSMUSG00000030041.9, intron 4 of 9) protein_coding-intron (ENSMUSG00000030041.9, intron 4 of 9) 7092 ENSMUSG00000107829.1 ENSMUSG00000107829 ENSMUST00000203283 Gm43985 processed_pseudogene Interval_95803 chr2 116702418 116703138 + 0 NA Intergenic Intergenic -174288 ENSMUSG00000081787.1 ENSMUSG00000081787 ENSMUST00000120190 Gm13991 processed_pseudogene Interval_141488 chr6 128587809 128588023 + 0 NA exon (ENSMUSG00000107503.1, exon 1 of 2) lincRNA-exon (ENSMUSG00000107503.1, exon 1 of 2) 109 ENSMUSG00000107503.1 ENSMUSG00000107503 ENSMUST00000203539 Gm44009 lincRNA Interval_163432 chr9 21411540 21412559 + 0 NA promoter-TSS (ENSMUSG00000097665.1) antisense-promoter-TSS (ENSMUSG00000097665.1) 183 ENSMUSG00000002825.8 ENSMUSG00000002825 ENSMUST00000217060 Qtrt1 protein_coding Interval_52113 chr14 36684689 36685664 + 0 NA Intergenic Intergenic 65898 ENSMUSG00000114779.1 ENSMUSG00000114779 ENSMUST00000225675 Gm17940 processed_pseudogene Interval_76434 chr17 80180122 80180966 + 0 NA intron (ENSMUSG00000035473.10, intron 2 of 3) protein_coding-intron (ENSMUSG00000035473.10, intron 4 of 6) 15860 ENSMUSG00000088453.1 ENSMUSG00000088453 ENSMUST00000157828 Gm25706 misc_RNA Interval_157876 chr8 75137587 75137897 + 0 NA Intergenic Intergenic 28118 ENSMUSG00000005410.6 ENSMUSG00000005410 ENSMUST00000211912 Mcm5 protein_coding Interval_44614 chr13 46715524 46716623 + 0 NA promoter-TSS (ENSMUSG00000021374.10) protein_coding-promoter-TSS (ENSMUSG00000021374.10) -8256 ENSMUSG00000021374.10 ENSMUSG00000021374 ENSMUST00000183299 Nup153 protein_coding Interval_69786 chr16 96326058 96328847 + 0 NA Intergenic Intergenic -34342 ENSMUSG00000117081.1 ENSMUSG00000117081 ENSMUST00000113795 Gm49948 protein_coding Interval_111918 chr4 32547003 32548047 + 0 NA intron (ENSMUSG00000040270.16, intron 2 of 4) protein_coding-intron (ENSMUSG00000040270.16, intron 4 of 7) 24183 ENSMUSG00000086150.1 ENSMUSG00000086150 ENSMUST00000149084 Bach2os antisense Interval_68728 chr16 85110660 85110928 + 0 NA intron (ENSMUSG00000022892.11, intron 2 of 13) protein_coding-intron (ENSMUSG00000022892.11, intron 2 of 15) 30683 ENSMUSG00000115469.1 ENSMUSG00000115469 ENSMUST00000227918 Gm49227 antisense Interval_32904 chr11 112976454 112977748 + 0 NA Intergenic Intergenic 151922 ENSMUSG00000020624.3 ENSMUSG00000020624 ENSMUST00000153429 4933434M16Rik lincRNA Interval_36441 chr12 44640581 44641461 + 0 NA Intergenic Intergenic -18359 ENSMUSG00000112823.1 ENSMUSG00000112823 ENSMUST00000217983 Gm6125 processed_pseudogene Interval_74532 chr17 53073137 53073938 + 0 NA Intergenic Intergenic -122914 ENSMUSG00000117244.1 ENSMUSG00000117244 ENSMUST00000233156 Gm9210 processed_pseudogene Interval_53998 chr14 64212749 64213206 + 0 NA intron (ENSMUSG00000054733.9, intron 4 of 5) protein_coding-intron (ENSMUSG00000054733.9, intron 9 of 10) 96663 ENSMUSG00000114284.1 ENSMUSG00000114284 ENSMUST00000225122 9630015K15Rik antisense Interval_29302 chr11 82780040 82781878 + 0 NA promoter-TSS (ENSMUSG00000020697.16) protein_coding-promoter-TSS (ENSMUSG00000020697.16) 83 ENSMUSG00000085175.7 ENSMUSG00000085175 ENSMUST00000136051 Gm11423 antisense Interval_11808 chr1 185585385 185585791 + 0 NA Intergenic Intergenic 98294 ENSMUSG00000102185.1 ENSMUSG00000102185 ENSMUST00000192616 5033404E19Rik transcribed_processed_pseudogene Interval_29275 chr11 82596579 82598223 + 0 NA Intergenic Intergenic -1222 ENSMUSG00000065201.1 ENSMUSG00000065201 ENSMUST00000083267 Gm24612 snRNA Interval_96127 chr2 119927341 119927580 + 0 NA TTS (ENSMUSG00000033943.15) protein_coding-TTS (ENSMUSG00000033943.15) 30155 ENSMUSG00000033943.15 ENSMUSG00000033943 ENSMUST00000131396 Mga protein_coding Interval_154320 chr8 14382412 14383248 + 0 NA intron (ENSMUSG00000047495.15, intron 1 of 10) protein_coding-intron (ENSMUSG00000047495.15, intron 2 of 14) 32652 ENSMUSG00000106670.1 ENSMUSG00000106670 ENSMUST00000199602 Gm44347 miRNA Interval_12545 chr1 195097755 195098145 + 0 NA TTS (ENSMUSG00000016481.15) protein_coding-TTS (ENSMUSG00000016481.15) -14875 ENSMUSG00000016493.13 ENSMUSG00000016493 ENSMUST00000162951 Cd46 protein_coding Interval_52641 chr14 48185629 48186374 + 0 NA intron (ENSMUSG00000021846.9, intron 1 of 4) protein_coding-intron (ENSMUSG00000021846.9, intron 2 of 5) 995 ENSMUSG00000021846.9 ENSMUSG00000021846 ENSMUST00000081029 Peli2 protein_coding Interval_46639 chr13 67843661 67845749 + 0 NA TTS (ENSMUSG00000058246.8) protein_coding-TTS (ENSMUSG00000058246.8) 10851 ENSMUSG00000058246.8 ENSMUSG00000058246 ENSMUST00000231606 Gm10037 protein_coding Interval_28576 chr11 76900170 76900762 + 0 NA Intergenic Intergenic -4009 ENSMUSG00000020839.16 ENSMUSG00000020839 ENSMUST00000136899 Tmigd1 protein_coding Interval_49056 chr13 107552047 107553258 + 0 NA intron (ENSMUSG00000114534.1, intron 1 of 3) processed_transcript-intron (ENSMUSG00000114534.1, intron 1 of 4) 12671 ENSMUSG00000114534.1 ENSMUSG00000114534 ENSMUST00000224949 Gm32004 processed_transcript Interval_151540 chr7 123377582 123378700 + 0 NA promoter-TSS (ENSMUSG00000030763.7) protein_coding-promoter-TSS (ENSMUSG00000030763.7) 4630 ENSMUSG00000088449.1 ENSMUSG00000088449 ENSMUST00000157824 Gm23559 snRNA Interval_59082 chr15 43259555 43260386 + 0 NA intron (ENSMUSG00000022336.3, intron 9 of 11) protein_coding-intron (ENSMUSG00000022336.3, intron 10 of 12) 19812 ENSMUSG00000022336.3 ENSMUSG00000022336 ENSMUST00000226415 Eif3e protein_coding Interval_154188 chr8 13292372 13293054 + 0 NA exon (ENSMUSG00000038497.7, exon 3 of 13) protein_coding-exon (ENSMUSG00000038497.7, exon 3 of 13) 4475 ENSMUSG00000038497.7 ENSMUSG00000038497 ENSMUST00000210750 Tmco3 protein_coding Interval_119241 chr4 136412494 136412690 + 0 NA Intergenic Intergenic -12020 ENSMUSG00000070687.11 ENSMUSG00000070687 ENSMUST00000133818 Htr1d protein_coding Interval_113621 chr4 57064838 57065770 + 0 NA intron (ENSMUSG00000028434.12, intron 2 of 3) protein_coding-intron (ENSMUSG00000028434.12, intron 14 of 15) 5255 ENSMUSG00000028434.12 ENSMUSG00000028434 ENSMUST00000133859 Epb41l4b protein_coding Interval_44268 chr13 43215134 43216571 + 0 NA intron (ENSMUSG00000051335.6, intron 1 of 1) protein_coding-intron (ENSMUSG00000051335.6, intron 1 of 1) -56300 ENSMUSG00000021368.15 ENSMUSG00000021368 ENSMUST00000221095 Tbc1d7 protein_coding Interval_137834 chr6 82831358 82831571 + 0 NA promoter-TSS (ENSMUSG00000108015.3) lincRNA-promoter-TSS (ENSMUSG00000108015.3) 30 ENSMUSG00000108015.3 ENSMUSG00000108015 ENSMUST00000203038 Gm32591 lincRNA Interval_52847 chr14 51056759 51057884 + 0 NA promoter-TSS (ENSMUSG00000068407.3) protein_coding-promoter-TSS (ENSMUSG00000068407.3) 340 ENSMUSG00000068407.3 ENSMUSG00000068407 ENSMUST00000227764 Rnase12 protein_coding Interval_174826 chrX 168508444 168508914 + 0 NA intron (ENSMUSG00000049176.16, intron 2 of 19) protein_coding-intron (ENSMUSG00000049176.16, intron 2 of 19) -37330 ENSMUSG00000084014.3 ENSMUSG00000084014 ENSMUST00000122339 Gm7209 processed_pseudogene Interval_90122 chr2 28308057 28308416 + 0 NA Intergenic Intergenic 15814 ENSMUSG00000087196.1 ENSMUSG00000087196 ENSMUST00000144634 Gm13373 lincRNA Interval_20242 chr10 116385459 116385972 + 0 NA exon (ENSMUSG00000020154.10, exon 32 of 32) protein_coding-exon (ENSMUSG00000020154.10, exon 32 of 32) -32337 ENSMUSG00000020164.7 ENSMUSG00000020164 ENSMUST00000134586 Kcnmb4os1 antisense Interval_144999 chr7 29347870 29348421 + 0 NA intron (ENSMUSG00000030583.16, intron 6 of 13) protein_coding-intron (ENSMUSG00000030583.16, intron 16 of 22) -28743 ENSMUSG00000109351.1 ENSMUSG00000109351 ENSMUST00000207245 Gm44632 antisense Interval_101509 chr3 3302575 3303177 + 0 NA Intergenic Intergenic -35849 ENSMUSG00000103028.1 ENSMUSG00000103028 ENSMUST00000195392 Gm8747 processed_pseudogene Interval_27939 chr11 71018838 71020081 + 0 NA promoter-TSS (ENSMUSG00000018442.13) protein_coding-promoter-TSS (ENSMUSG00000018442.13) -152 ENSMUSG00000040599.13 ENSMUSG00000040599 ENSMUST00000136137 Mis12 protein_coding Interval_135980 chr6 49225060 49226185 + 0 NA Intergenic Intergenic -29229 ENSMUSG00000107962.1 ENSMUSG00000107962 ENSMUST00000204899 Gm43980 TEC Interval_58380 chr15 34026687 34028161 + 0 NA intron (ENSMUSG00000115428.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000115428.1, intron 1 of 2) 10356 ENSMUSG00000115428.1 ENSMUSG00000115428 ENSMUST00000228182 Gm41290 lincRNA Interval_60891 chr15 77628402 77628939 + 0 NA Intergenic Intergenic 6836 ENSMUSG00000095704.2 ENSMUSG00000095704 ENSMUST00000178052 Gm8221 unprocessed_pseudogene Interval_52932 chr14 52109656 52110272 + 0 NA promoter-TSS (ENSMUSG00000057132.16) protein_coding-promoter-TSS (ENSMUSG00000057132.16) -5971 ENSMUSG00000060373.15 ENSMUSG00000060373 ENSMUST00000228786 Hnrnpc protein_coding Interval_91414 chr2 38643359 38644429 + 0 NA promoter-TSS (ENSMUSG00000026750.6) protein_coding-promoter-TSS (ENSMUSG00000026750.6) 26 ENSMUSG00000026750.6 ENSMUSG00000026750 ENSMUST00000151981 Psmb7 protein_coding Interval_36643 chr12 51710275 51710904 + 0 NA intron (ENSMUSG00000020955.9, intron 1 of 5) protein_coding-intron (ENSMUSG00000020955.9, intron 1 of 5) 19556 ENSMUSG00000020955.9 ENSMUSG00000020955 ENSMUST00000021338 Ap4s1 protein_coding Interval_87045 chr19 45777350 45777701 + 0 NA exon (ENSMUSG00000025220.8, exon 3 of 8) protein_coding-exon (ENSMUSG00000025220.8, exon 3 of 8) -5639 ENSMUSG00000025220.8 ENSMUSG00000025220 ENSMUST00000235448 Oga protein_coding Interval_125728 chr5 73637654 73638698 + 0 NA intron (ENSMUSG00000029156.11, intron 5 of 5) protein_coding-intron (ENSMUSG00000029156.11, intron 5 of 5) 6292 ENSMUSG00000029156.11 ENSMUSG00000029156 ENSMUST00000201416 Sgcb protein_coding Interval_115420 chr4 98796822 98797146 + 0 NA exon (ENSMUSG00000085843.1, exon 3 of 3) antisense-exon (ENSMUSG00000085843.1, exon 3 of 3) 3216 ENSMUSG00000085843.1 ENSMUSG00000085843 ENSMUST00000133455 Kank4os antisense Interval_42009 chr13 6470947 6472128 + 0 NA Intergenic Intergenic -59058 ENSMUSG00000114195.1 ENSMUSG00000114195 ENSMUST00000221776 2900042G08Rik TEC Interval_92968 chr2 69043595 69043802 + 0 NA intron (ENSMUSG00000027035.10, intron 4 of 10) protein_coding-intron (ENSMUSG00000027035.10, intron 4 of 9) 25602 ENSMUSG00000102662.1 ENSMUSG00000102662 ENSMUST00000193253 Gm38377 TEC Interval_23618 chr11 23854754 23856233 + 0 NA Intergenic Intergenic 36411 ENSMUSG00000020273.13 ENSMUSG00000020273 ENSMUST00000102863 Papolg protein_coding Interval_159166 chr8 91323848 91324540 + 0 NA intron (ENSMUSG00000055932.15, intron 1 of 6) protein_coding-intron (ENSMUSG00000055932.15, intron 1 of 8) 10580 ENSMUSG00000055932.15 ENSMUSG00000055932 ENSMUST00000140276 Fto protein_coding Interval_81292 chr18 57551235 57552556 + 0 NA promoter-TSS (ENSMUSG00000086607.7) antisense-promoter-TSS (ENSMUSG00000086607.7) -16 ENSMUSG00000086607.7 ENSMUSG00000086607 ENSMUST00000151209 4930511M06Rik antisense Interval_67722 chr16 56335390 56335718 + 0 NA TTS (ENSMUSG00000116998.1) processed_pseudogene-TTS (ENSMUSG00000116998.1) 1824 ENSMUSG00000116998.1 ENSMUSG00000116998 ENSMUST00000231232 Gm21050 processed_pseudogene Interval_126425 chr5 88409397 88409611 + 0 NA Intergenic Intergenic -13711 ENSMUSG00000106633.1 ENSMUSG00000106633 ENSMUST00000198577 Gm43431 processed_pseudogene Interval_52176 chr14 38243515 38243694 + 0 NA Intergenic Intergenic -74300 ENSMUSG00000114219.1 ENSMUSG00000114219 ENSMUST00000225614 Gm31456 lincRNA Interval_83283 chr18 83451092 83452697 + 0 NA Intergenic Intergenic -28415 ENSMUSG00000118060.1 ENSMUSG00000118060 ENSMUST00000236210 4933401L05Rik lincRNA Interval_72195 chr17 28528149 28528486 + 0 NA TTS (ENSMUSG00000117131.1) bidirectional_promoter_lncRNA-TTS (ENSMUSG00000117131.1) 1985 ENSMUSG00000095947.1 ENSMUSG00000095947 ENSMUST00000177656 Gm25195 miRNA Interval_151191 chr7 119279277 119279548 + 0 NA Intergenic Intergenic 22295 ENSMUSG00000108921.1 ENSMUSG00000108921 ENSMUST00000207158 Gm4083 processed_pseudogene Interval_56292 chr14 116652071 116652702 + 0 NA Intergenic Intergenic -97829 ENSMUSG00000104296.1 ENSMUSG00000104296 ENSMUST00000193536 Gm38045 TEC Interval_7159 chr1 127305775 127307206 + 0 NA promoter-TSS (ENSMUSG00000036155.13) protein_coding-promoter-TSS (ENSMUSG00000036155.13) -23382 ENSMUSG00000099471.1 ENSMUSG00000099471 ENSMUST00000170338 Gm8451 processed_pseudogene Interval_66362 chr16 33400098 33400931 + 0 NA promoter-TSS (ENSMUSG00000022811.17) protein_coding-promoter-TSS (ENSMUSG00000022811.17) 19651 ENSMUSG00000022811.17 ENSMUSG00000022811 ENSMUST00000089677 Zfp148 protein_coding Interval_22968 chr11 18138859 18139148 + 0 NA Intergenic Intergenic 43017 ENSMUSG00000085453.1 ENSMUSG00000085453 ENSMUST00000150694 Gm12018 lincRNA Interval_137388 chr6 71859078 71859287 + 0 NA intron (ENSMUSG00000052337.15, intron 6 of 13) protein_coding-intron (ENSMUSG00000052337.15, intron 7 of 14) 10823 ENSMUSG00000108681.1 ENSMUSG00000108681 ENSMUST00000206836 Gm17825 processed_pseudogene Interval_130553 chr5 128768981 128769586 + 0 NA promoter-TSS (ENSMUSG00000105271.1) antisense-promoter-TSS (ENSMUSG00000105271.1) -241 ENSMUSG00000105271.1 ENSMUSG00000105271 ENSMUST00000197674 Gm42875 antisense Interval_47171 chr13 77009800 77010022 + 0 NA intron (ENSMUSG00000021596.16, intron 17 of 20) protein_coding-intron (ENSMUSG00000021596.16, intron 17 of 20) 74748 ENSMUSG00000090119.1 ENSMUSG00000090119 ENSMUST00000160999 Gm8185 processed_pseudogene Interval_147734 chr7 73150080 73150639 + 0 NA Intergenic Intergenic 25908 ENSMUSG00000108345.1 ENSMUSG00000108345 ENSMUST00000205892 4933435G04Rik lincRNA Interval_148397 chr7 81017113 81017313 + 0 NA intron (ENSMUSG00000005621.11, intron 2 of 9) protein_coding-intron (ENSMUSG00000005621.11, intron 2 of 9) -6207 ENSMUSG00000005621.11 ENSMUSG00000005621 ENSMUST00000125137 Zfp592 protein_coding Interval_114838 chr4 86068847 86069091 + 0 NA intron (ENSMUSG00000066113.16, intron 1 of 8) protein_coding-intron (ENSMUSG00000066113.16, intron 1 of 12) -25475 ENSMUSG00000064687.1 ENSMUSG00000064687 ENSMUST00000082753 Gm25811 snRNA Interval_133547 chr6 6463874 6464277 + 0 NA intron (ENSMUSG00000093658.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000093658.1, intron 2 of 2) -18947 ENSMUSG00000093380.1 ENSMUSG00000093380 ENSMUST00000176654 Gm20685 lincRNA Interval_3176 chr1 54477361 54477600 + 0 NA exon (ENSMUSG00000073678.4, exon 27 of 27) protein_coding-exon (ENSMUSG00000073678.4, exon 27 of 27) -20717 ENSMUSG00000109809.1 ENSMUSG00000109809 ENSMUST00000210156 Gm34066 protein_coding Interval_101311 chr2 180319962 180321207 + 0 NA Intergenic Intergenic -12273 ENSMUSG00000056061.3 ENSMUSG00000056061 ENSMUST00000069943 Gata5os antisense Interval_109287 chr3 138654924 138655153 + 0 NA Intergenic Intergenic -11094 ENSMUSG00000105126.1 ENSMUSG00000105126 ENSMUST00000196886 Gm43723 processed_pseudogene Interval_11538 chr1 182539060 182539645 + 0 NA Intergenic Intergenic -6898 ENSMUSG00000103878.1 ENSMUSG00000103878 ENSMUST00000192906 Gm8197 transcribed_processed_pseudogene Interval_146720 chr7 49699810 49700226 + 0 NA Intergenic Intergenic -59097 ENSMUSG00000039745.8 ENSMUSG00000039745 ENSMUST00000207895 Htatip2 protein_coding Interval_130951 chr5 134226750 134228198 + 0 NA exon (ENSMUSG00000015950.13, exon 3 of 11) protein_coding-exon (ENSMUSG00000015950.13, exon 3 of 11) -5252 ENSMUSG00000015950.13 ENSMUSG00000015950 ENSMUST00000126934 Ncf1 protein_coding Interval_118618 chr4 132795997 132796787 + 0 NA promoter-TSS (ENSMUSG00000037731.5) protein_coding-promoter-TSS (ENSMUSG00000037731.5) -5 ENSMUSG00000037731.5 ENSMUSG00000037731 ENSMUST00000045154 Themis2 protein_coding Interval_136401 chr6 54127397 54127762 + 0 NA intron (ENSMUSG00000004633.17, intron 1 of 5) protein_coding-intron (ENSMUSG00000004633.17, intron 1 of 12) 23358 ENSMUSG00000087670.1 ENSMUSG00000087670 ENSMUST00000138767 9530036M11Rik antisense Interval_45128 chr13 52551258 52551647 + 0 NA Intergenic Intergenic -20173 ENSMUSG00000047842.7 ENSMUSG00000047842 ENSMUST00000057442 Diras2 protein_coding Interval_8573 chr1 143155647 143155837 + 0 NA Intergenic Intergenic -61126 ENSMUSG00000101795.2 ENSMUSG00000101795 ENSMUST00000185806 Gm5835 processed_pseudogene Interval_123377 chr5 32000371 32000891 + 0 NA intron (ENSMUSG00000052139.18, intron 5 of 6) protein_coding-intron (ENSMUSG00000052139.18, intron 9 of 13) 10232 ENSMUSG00000106894.1 ENSMUSG00000106894 ENSMUST00000201542 Gm17130 antisense Interval_46119 chr13 61843526 61844661 + 0 NA intron (ENSMUSG00000113626.1, intron 1 of 2) transcribed_processed_pseudogene-intron (ENSMUSG00000113626.1, intron 1 of 2) -20429 ENSMUSG00000080451.1 ENSMUSG00000080451 ENSMUST00000116801 Gm24193 miRNA Interval_60622 chr15 75751345 75751920 + 0 NA Intergenic Intergenic -3404 ENSMUSG00000047591.5 ENSMUSG00000047591 ENSMUST00000062002 Mafa protein_coding Interval_174849 chrX 169844222 169844767 + 0 NA intron (ENSMUSG00000035299.16, intron 1 of 9) protein_coding-intron (ENSMUSG00000035299.16, intron 1 of 9) -64937 ENSMUSG00000055357.8 ENSMUSG00000055357 ENSMUST00000112102 4933400A11Rik protein_coding Interval_27248 chr11 64898454 64899422 + 0 NA Intergenic Intergenic -55185 ENSMUSG00000086490.1 ENSMUSG00000086490 ENSMUST00000122911 Gm12292 lincRNA Interval_62368 chr15 91199344 91200073 + 0 NA intron (ENSMUSG00000078932.8, intron 1 of 12) protein_coding-intron (ENSMUSG00000078932.8, intron 1 of 12) 214 ENSMUSG00000078932.8 ENSMUSG00000078932 ENSMUST00000109284 CN725425 protein_coding Interval_102391 chr3 23342399 23342872 + 0 NA Intergenic Intergenic 32682 ENSMUSG00000102214.1 ENSMUSG00000102214 ENSMUST00000191948 Gm37492 processed_pseudogene Interval_163468 chr9 21576446 21576718 + 0 NA intron (ENSMUSG00000032185.15, intron 4 of 13) protein_coding-intron (ENSMUSG00000032185.15, intron 4 of 15) -10763 ENSMUSG00000032185.15 ENSMUSG00000032185 ENSMUST00000130100 Carm1 protein_coding Interval_51858 chr14 33032947 33033622 + 0 NA intron (ENSMUSG00000051506.17, intron 43 of 61) protein_coding-intron (ENSMUSG00000051506.17, intron 40 of 58) 38019 ENSMUSG00000041673.12 ENSMUSG00000041673 ENSMUST00000123910 Lrrc18 protein_coding Interval_160607 chr8 111014878 111015886 + 0 NA intron (ENSMUSG00000033658.16, intron 6 of 11) protein_coding-intron (ENSMUSG00000033658.16, intron 6 of 11) 1148 ENSMUSG00000093087.1 ENSMUSG00000093087 ENSMUST00000175346 Mir3473d miRNA Interval_130093 chr5 124213652 124214263 + 0 NA intron (ENSMUSG00000029406.15, intron 2 of 24) protein_coding-intron (ENSMUSG00000029406.15, intron 1 of 23) -15768 ENSMUSG00000090220.1 ENSMUSG00000090220 ENSMUST00000161697 Pitpnm2os1 antisense Interval_133426 chr6 4972527 4973499 + 0 NA intron (ENSMUSG00000032827.15, intron 1 of 17) protein_coding-intron (ENSMUSG00000032827.15, intron 2 of 15) 14030 ENSMUSG00000097396.1 ENSMUSG00000097396 ENSMUST00000180645 Gm26556 TEC Interval_159937 chr8 105278850 105279321 + 0 NA exon (ENSMUSG00000014776.7, exon 2 of 4) protein_coding-exon (ENSMUSG00000014776.7, exon 2 of 4) 2945 ENSMUSG00000014776.7 ENSMUSG00000014776 ENSMUST00000014920 Nol3 protein_coding Interval_66260 chr16 32696988 32699005 + 0 NA Intergenic Intergenic 20065 ENSMUSG00000022791.19 ENSMUSG00000022791 ENSMUST00000232650 Tnk2 protein_coding Interval_81635 chr18 62666676 62667558 + 0 NA exon (ENSMUSG00000044176.12, exon 9 of 9) protein_coding-exon (ENSMUSG00000044176.12, exon 9 of 9) -4144 ENSMUSG00000117712.1 ENSMUSG00000117712 ENSMUST00000236939 Gm19159 processed_pseudogene Interval_151122 chr7 118688023 118689183 + 0 NA promoter-TSS (ENSMUSG00000109357.1) TEC-promoter-TSS (ENSMUSG00000109357.1) 58 ENSMUSG00000109357.1 ENSMUSG00000109357 ENSMUST00000208632 Gm45236 TEC Interval_75629 chr17 69495670 69495937 + 0 NA Intergenic Intergenic -19928 ENSMUSG00000117053.1 ENSMUSG00000117053 ENSMUST00000232967 A730049N16Rik antisense Interval_21525 chr10 129189317 129189534 + 0 NA Intergenic Intergenic -2006 ENSMUSG00000096000.1 ENSMUSG00000096000 ENSMUST00000072976 Olfr773 protein_coding Interval_173355 chrX 83524586 83525016 + 0 NA intron (ENSMUSG00000045103.19, intron 7 of 16) protein_coding-intron (ENSMUSG00000045103.19, intron 7 of 78) -11230 ENSMUSG00000065661.1 ENSMUSG00000065661 ENSMUST00000083727 Gm22580 snRNA Interval_149747 chr7 101107566 101109568 + 0 NA promoter-TSS (ENSMUSG00000030691.15) protein_coding-promoter-TSS (ENSMUSG00000030691.15) 46488 ENSMUSG00000083121.3 ENSMUSG00000083121 ENSMUST00000119683 Gm6341 processed_pseudogene Interval_150402 chr7 110166175 110166793 + 0 NA Intergenic Intergenic 44438 ENSMUSG00000031016.9 ENSMUSG00000031016 ENSMUST00000033326 Wee1 protein_coding Interval_151301 chr7 120826379 120826734 + 0 NA intron (ENSMUSG00000109392.1, intron 10 of 11) protein_coding-intron (ENSMUSG00000109392.1, intron 10 of 11) 14191 ENSMUSG00000109392.1 ENSMUSG00000109392 ENSMUST00000208668 Gm5737 protein_coding Interval_158065 chr8 78508348 78510234 + 0 NA promoter-TSS (ENSMUSG00000031684.11) protein_coding-promoter-TSS (ENSMUSG00000031684.11) -55 ENSMUSG00000031684.11 ENSMUSG00000031684 ENSMUST00000210132 Slc10a7 protein_coding Interval_76511 chr17 80675987 80677105 + 0 NA intron (ENSMUSG00000024242.15, intron 3 of 6) protein_coding-intron (ENSMUSG00000024242.15, intron 2 of 33) -51560 ENSMUSG00000024242.15 ENSMUSG00000024242 ENSMUST00000234486 Map4k3 protein_coding Interval_18441 chr10 85967746 85968634 + 0 NA intron (ENSMUSG00000050108.12, intron 12 of 15) protein_coding-intron (ENSMUSG00000050108.12, intron 12 of 15) -12411 ENSMUSG00000001783.3 ENSMUSG00000001783 ENSMUST00000139413 Rtcb protein_coding Interval_126798 chr5 92992682 92993147 + 0 NA Intergenic Intergenic -10917 ENSMUSG00000106930.1 ENSMUSG00000106930 ENSMUST00000200896 Gm6450 processed_pseudogene Interval_69100 chr16 90658070 90658744 + 0 NA Intergenic Intergenic -9920 ENSMUSG00000116591.1 ENSMUSG00000116591 ENSMUST00000231764 Gm49715 lincRNA Interval_100953 chr2 173601463 173602205 + 0 NA intron (ENSMUSG00000055897.13, intron 1 of 2) transcribed_unprocessed_pseudogene-intron (ENSMUSG00000055897.13, intron 1 of 2) -10521 ENSMUSG00000055897.13 ENSMUSG00000055897 ENSMUST00000133185 Ppp4r1l-ps transcribed_unprocessed_pseudogene Interval_71262 chr17 21730208 21731703 + 0 NA exon (ENSMUSG00000061544.13, exon 1 of 6) protein_coding-exon (ENSMUSG00000061544.13, exon 1 of 6) -2769 ENSMUSG00000061544.13 ENSMUSG00000061544 ENSMUST00000182603 Zfp229 protein_coding Interval_15128 chr10 42719297 42720076 + 0 NA Intergenic Intergenic -21168 ENSMUSG00000086434.1 ENSMUSG00000086434 ENSMUST00000149950 Gm15200 antisense Interval_52058 chr14 34937680 34939020 + 0 NA intron (ENSMUSG00000041078.7, intron 2 of 15) protein_coding-intron (ENSMUSG00000041078.7, intron 2 of 15) 43741 ENSMUSG00000065481.1 ENSMUSG00000065481 ENSMUST00000083547 Mir346 miRNA Interval_122087 chr5 16721518 16722128 + 0 NA Intergenic Intergenic 9247 ENSMUSG00000059179.6 ENSMUSG00000059179 ENSMUST00000073014 Gm8991 processed_pseudogene Interval_52522 chr14 47310527 47311212 + 0 NA promoter-TSS (ENSMUSG00000021840.17) protein_coding-promoter-TSS (ENSMUSG00000021840.17) -79 ENSMUSG00000021840.17 ENSMUSG00000021840 ENSMUST00000228058 Mapk1ip1l protein_coding Interval_62431 chr15 92554968 92555472 + 0 NA intron (ENSMUSG00000036218.16, intron 1 of 2) protein_coding-intron (ENSMUSG00000036218.16, intron 3 of 9) 150735 ENSMUSG00000115858.1 ENSMUSG00000115858 ENSMUST00000230757 4930588J15Rik antisense Interval_73923 chr17 45506695 45507494 + 0 NA intron (ENSMUSG00000023938.8, intron 1 of 21) protein_coding-intron (ENSMUSG00000023938.8, intron 1 of 21) -7135 ENSMUSG00000023938.8 ENSMUSG00000023938 ENSMUST00000232693 Aars2 protein_coding Interval_94131 chr2 84585535 84586682 + 0 NA intron (ENSMUSG00000118521.1, intron 1 of 2) processed_pseudogene-intron (ENSMUSG00000118521.1, intron 1 of 2) 6732 ENSMUSG00000118521.1 ENSMUSG00000118521 ENSMUST00000238924 AL928616.1 processed_pseudogene Interval_35922 chr12 31964195 31964641 + 0 NA intron (ENSMUSG00000002997.15, intron 8 of 10) protein_coding-intron (ENSMUSG00000002997.15, intron 8 of 11) -24011 ENSMUSG00000002996.17 ENSMUSG00000002996 ENSMUST00000175666 Hbp1 protein_coding Interval_76125 chr17 75214117 75214484 + 0 NA intron (ENSMUSG00000001870.16, intron 5 of 34) protein_coding-intron (ENSMUSG00000001870.16, intron 5 of 33) 49093 ENSMUSG00000084025.1 ENSMUSG00000084025 ENSMUST00000120159 Gm6276 processed_pseudogene Interval_919 chr1 13163609 13164193 + 0 NA TTS (ENSMUSG00000005886.14) protein_coding-TTS (ENSMUSG00000005886.14) 15813 ENSMUSG00000103506.1 ENSMUSG00000103506 ENSMUST00000195493 Gm38376 TEC Interval_35730 chr12 28695894 28696123 + 0 NA intron (ENSMUSG00000020628.16, intron 9 of 11) protein_coding-intron (ENSMUSG00000020628.16, intron 9 of 11) 16683 ENSMUSG00000098579.1 ENSMUSG00000098579 ENSMUST00000184974 Mir6937 miRNA Interval_56763 chr14 121913453 121914843 + 0 NA intron (ENSMUSG00000050350.8, intron 1 of 1) protein_coding-intron (ENSMUSG00000041765.6, intron 4 of 8) 1633 ENSMUSG00000050350.8 ENSMUSG00000050350 ENSMUST00000055475 Gpr18 protein_coding Interval_90531 chr2 30991973 30992226 + 0 NA intron (ENSMUSG00000026854.16, intron 2 of 4) protein_coding-intron (ENSMUSG00000026854.16, intron 1 of 9) 9765 ENSMUSG00000026854.16 ENSMUSG00000026854 ENSMUST00000127776 Usp20 protein_coding Interval_88146 chr19 59706135 59708136 + 0 NA Intergenic Intergenic 16401 ENSMUSG00000118190.1 ENSMUSG00000118190 ENSMUST00000235911 Gm50411 lincRNA Interval_74900 chr17 57170816 57171182 + 0 NA Intergenic Intergenic -21222 ENSMUSG00000019489.7 ENSMUSG00000019489 ENSMUST00000019633 Cd70 protein_coding Interval_80948 chr18 50864960 50865676 + 0 NA Intergenic Intergenic -137786 ENSMUSG00000118088.1 ENSMUSG00000118088 ENSMUST00000236182 Gm3815 processed_pseudogene Interval_101288 chr2 180196237 180196812 + 0 NA exon (ENSMUSG00000015647.9, exon 21 of 79) protein_coding-exon (ENSMUSG00000015647.9, exon 21 of 79) -16701 ENSMUSG00000098735.1 ENSMUSG00000098735 ENSMUST00000185089 Mir7005 miRNA Interval_101147 chr2 178494056 178494416 + 0 NA Intergenic Intergenic 33606 ENSMUSG00000039155.15 ENSMUSG00000039155 ENSMUST00000176869 Cdh26 protein_coding Interval_169634 chr9 99575462 99576453 + 0 NA promoter-TSS (ENSMUSG00000032469.12) protein_coding-promoter-TSS (ENSMUSG00000032469.12) -123 ENSMUSG00000032469.12 ENSMUSG00000032469 ENSMUST00000136884 Dbr1 protein_coding Interval_162953 chr9 13697562 13698154 + 0 NA intron (ENSMUSG00000031925.17, intron 2 of 3) protein_coding-intron (ENSMUSG00000031925.17, intron 2 of 3) 29584 ENSMUSG00000111698.1 ENSMUSG00000111698 ENSMUST00000215676 Gm47105 processed_pseudogene Interval_121646 chr5 4261460 4261689 + 0 NA Intergenic Intergenic 69207 ENSMUSG00000053178.5 ENSMUSG00000053178 ENSMUST00000177258 Mterf1b protein_coding Interval_14504 chr10 34444941 34445202 + 0 NA Intergenic Intergenic -26603 ENSMUSG00000039480.14 ENSMUSG00000039480 ENSMUST00000099973 Nt5dc1 protein_coding Interval_15303 chr10 44358901 44359744 + 0 NA promoter-TSS (ENSMUSG00000089260.1) miRNA-promoter-TSS (ENSMUSG00000089260.1) -354 ENSMUSG00000089260.1 ENSMUSG00000089260 ENSMUST00000158635 Mir1929 miRNA Interval_121011 chr4 152204565 152205054 + 0 NA TTS (ENSMUSG00000085724.1) sense_intronic-TTS (ENSMUSG00000085724.1) 883 ENSMUSG00000085724.1 ENSMUSG00000085724 ENSMUST00000127752 Gm13096 sense_intronic Interval_119124 chr4 135698420 135699336 + 0 NA exon (ENSMUSG00000062157.6, exon 3 of 7) protein_coding-exon (ENSMUSG00000062157.6, exon 3 of 7) 12591 ENSMUSG00000062157.6 ENSMUSG00000062157 ENSMUST00000074408 Ifnlr1 protein_coding Interval_81671 chr18 63045425 63045837 + 0 NA intron (ENSMUSG00000041482.17, intron 37 of 53) protein_coding-intron (ENSMUSG00000041482.17, intron 37 of 53) 67784 ENSMUSG00000024581.13 ENSMUSG00000024581 ENSMUST00000236914 Napg protein_coding Interval_147877 chr7 74967801 74969454 + 0 NA Intergenic Intergenic -5930 ENSMUSG00000089522.1 ENSMUSG00000089522 ENSMUST00000158897 Gm22326 misc_RNA Interval_129876 chr5 122871890 122873968 + 0 NA intron (ENSMUSG00000029475.17, intron 12 of 12) protein_coding-intron (ENSMUSG00000029475.17, intron 11 of 11) 22772 ENSMUSG00000029474.7 ENSMUSG00000029474 ENSMUST00000198602 Rnf34 protein_coding Interval_52327 chr14 45019542 45020714 + 0 NA Intergenic Intergenic -30327 ENSMUSG00000090709.2 ENSMUSG00000090709 ENSMUST00000228945 Gm17173 antisense Interval_75012 chr17 60213263 60213527 + 0 NA Intergenic Intergenic -82520 ENSMUSG00000101606.1 ENSMUSG00000101606 ENSMUST00000190184 Gm29051 lincRNA Interval_103817 chr3 53305901 53307327 + 0 NA Intergenic Intergenic 40615 ENSMUSG00000106660.1 ENSMUSG00000106660 ENSMUST00000200175 Gm43472 processed_pseudogene Interval_162315 chr8 127011603 127012836 + 0 NA Intergenic Intergenic 28481 ENSMUSG00000110492.1 ENSMUSG00000110492 ENSMUST00000212814 Gm5358 processed_pseudogene Interval_115300 chr4 95557113 95557895 + 0 NA promoter-TSS (ENSMUSG00000028573.18) protein_coding-promoter-TSS (ENSMUSG00000028573.18) -16 ENSMUSG00000028573.18 ENSMUSG00000028573 ENSMUST00000142384 Fggy protein_coding Interval_8593 chr1 143636591 143637253 + 0 NA promoter-TSS (ENSMUSG00000026361.9) protein_coding-promoter-TSS (ENSMUSG00000026361.9) -3742 ENSMUSG00000033849.3 ENSMUSG00000033849 ENSMUST00000038252 B3galt2 protein_coding Interval_141750 chr6 134220326 134220783 + 0 NA intron (ENSMUSG00000030199.16, intron 2 of 4) protein_coding-intron (ENSMUSG00000030199.16, intron 2 of 7) -13046 ENSMUSG00000030199.16 ENSMUSG00000030199 ENSMUST00000145869 Etv6 protein_coding Interval_85470 chr19 26844876 26845969 + 0 NA Intergenic Intergenic -21515 ENSMUSG00000093772.1 ENSMUSG00000093772 ENSMUST00000177048 4931403E22Rik antisense Interval_1149 chr1 16159242 16159566 + 0 NA Intergenic Intergenic 28902 ENSMUSG00000025921.7 ENSMUSG00000025921 ENSMUST00000152626 Rdh10 protein_coding Interval_162129 chr8 125385206 125386075 + 0 NA Intergenic Intergenic -158317 ENSMUSG00000086694.1 ENSMUSG00000086694 ENSMUST00000156666 Gm16237 antisense Interval_67672 chr16 55865653 55866530 + 0 NA exon (ENSMUSG00000075033.4, exon 3 of 6) protein_coding-exon (ENSMUSG00000075033.4, exon 3 of 6) 18400 ENSMUSG00000116919.1 ENSMUSG00000116919 ENSMUST00000232524 Gm17809 processed_pseudogene Interval_103307 chr3 38433625 38434325 + 0 NA intron (ENSMUSG00000105516.4, intron 1 of 2) lincRNA-intron (ENSMUSG00000105516.4, intron 1 of 2) 5818 ENSMUSG00000106201.1 ENSMUSG00000106201 ENSMUST00000196104 Gm7815 processed_pseudogene Interval_36371 chr12 42524647 42525268 + 0 NA Intergenic Intergenic 243241 ENSMUSG00000093214.1 ENSMUSG00000093214 ENSMUST00000175473 Gm25248 miRNA Interval_159462 chr8 94870845 94871342 + 0 NA exon (ENSMUSG00000031783.10, exon 10 of 10) protein_coding-exon (ENSMUSG00000031783.10, exon 10 of 10) 111 ENSMUSG00000040631.8 ENSMUSG00000040631 ENSMUST00000212745 Dok4 protein_coding Interval_3720 chr1 61967188 61967740 + 0 NA intron (ENSMUSG00000052062.14, intron 2 of 9) protein_coding-intron (ENSMUSG00000052062.14, intron 2 of 21) 13743 ENSMUSG00000100344.1 ENSMUSG00000100344 ENSMUST00000187972 Gm29640 processed_pseudogene Interval_135494 chr6 39630254 39630587 + 0 NA intron (ENSMUSG00000002413.15, intron 13 of 17) protein_coding-intron (ENSMUSG00000002413.15, intron 16 of 21) 23545 ENSMUSG00000091313.1 ENSMUSG00000091313 ENSMUST00000168364 Fth-ps2 processed_pseudogene Interval_153571 chr8 3467067 3468120 + 0 NA promoter-TSS (ENSMUSG00000069633.12) protein_coding-promoter-TSS (ENSMUSG00000069633.12) 77 ENSMUSG00000069633.12 ENSMUSG00000069633 ENSMUST00000118194 Pex11g protein_coding Interval_62962 chr15 98228419 98229020 + 0 NA intron (ENSMUSG00000059460.7, intron 2 of 2) protein_coding-intron (ENSMUSG00000059460.7, intron 3 of 3) 5531 ENSMUSG00000059460.7 ENSMUSG00000059460 ENSMUST00000205393 Olfr286 protein_coding Interval_85472 chr19 26900306 26900523 + 0 NA Intergenic Intergenic 14533 ENSMUSG00000074913.3 ENSMUSG00000074913 ENSMUST00000099536 Gm815 protein_coding Interval_1870 chr1 34218287 34218744 + 0 NA exon (ENSMUSG00000026131.20, exon 53 of 98) protein_coding-exon (ENSMUSG00000026131.20, exon 53 of 98) -40069 ENSMUSG00000096992.3 ENSMUSG00000096992 ENSMUST00000187268 Gm26788 processed_transcript Interval_158323 chr8 81250973 81251351 + 0 NA Intergenic Intergenic 43901 ENSMUSG00000109928.1 ENSMUSG00000109928 ENSMUST00000210313 Gm45539 processed_pseudogene Interval_75925 chr17 73102517 73102957 + 0 NA Intergenic Intergenic -23690 ENSMUSG00000054469.14 ENSMUSG00000054469 ENSMUST00000134149 Lclat1 protein_coding Interval_135885 chr6 48413633 48414397 + 0 NA exon (ENSMUSG00000042810.14, exon 6 of 8) protein_coding-exon (ENSMUSG00000042810.14, exon 6 of 8) 679 ENSMUSG00000042810.14 ENSMUSG00000042810 ENSMUST00000204554 Krba1 protein_coding Interval_129411 chr5 119831223 119832145 + 0 NA promoter-TSS (ENSMUSG00000018263.11) protein_coding-promoter-TSS (ENSMUSG00000018263.11) 338 ENSMUSG00000106795.3 ENSMUSG00000106795 ENSMUST00000201152 Gm43050 lincRNA Interval_52928 chr14 52091738 52092001 + 0 NA intron (ENSMUSG00000060373.15, intron 1 of 7) protein_coding-intron (ENSMUSG00000060373.15, intron 2 of 8) 12124 ENSMUSG00000060373.15 ENSMUSG00000060373 ENSMUST00000228786 Hnrnpc protein_coding Interval_33894 chr11 119235503 119236305 + 0 NA intron (ENSMUSG00000039963.20, intron 5 of 20) protein_coding-intron (ENSMUSG00000039963.20, intron 4 of 18) 7306 ENSMUSG00000039963.20 ENSMUSG00000039963 ENSMUST00000125724 Ccdc40 protein_coding Interval_164127 chr9 31713951 31714538 + 0 NA Intergenic Intergenic -36218 ENSMUSG00000110853.1 ENSMUSG00000110853 ENSMUST00000217207 Gm47436 lincRNA Interval_89133 chr2 17130105 17130414 + 0 NA Intergenic Intergenic -38966 ENSMUSG00000081525.1 ENSMUSG00000081525 ENSMUST00000118746 Gm13325 processed_pseudogene Interval_26873 chr11 61223820 61225404 + 0 NA exon (ENSMUSG00000010025.19, exon 10 of 10) protein_coding-exon (ENSMUSG00000010025.19, exon 10 of 10) 17075 ENSMUSG00000019102.10 ENSMUSG00000019102 ENSMUST00000019246 Aldh3a1 protein_coding Interval_156044 chr8 43177337 43181278 + 0 NA Intergenic Intergenic -5739 ENSMUSG00000091490.3 ENSMUSG00000091490 ENSMUST00000211228 Triml2 protein_coding Interval_3138 chr1 53909050 53909732 + 0 NA intron (ENSMUSG00000042807.15, intron 13 of 28) protein_coding-intron (ENSMUSG00000042807.15, intron 13 of 28) -22450 ENSMUSG00000087949.1 ENSMUSG00000087949 ENSMUST00000157324 Gm24251 snRNA Interval_160483 chr8 109890480 109891596 + 0 NA intron (ENSMUSG00000031732.12, intron 2 of 18) protein_coding-intron (ENSMUSG00000031732.12, intron 2 of 18) 22435 ENSMUSG00000031732.12 ENSMUSG00000031732 ENSMUST00000034175 Phlpp2 protein_coding Interval_140560 chr6 119523428 119523981 + 0 NA intron (ENSMUSG00000030170.14, intron 1 of 4) protein_coding-intron (ENSMUSG00000030170.14, intron 1 of 4) 20643 ENSMUSG00000030170.14 ENSMUSG00000030170 ENSMUST00000119369 Wnt5b protein_coding Interval_138743 chr6 91580307 91582044 + 0 NA Intergenic Intergenic -13583 ENSMUSG00000108335.1 ENSMUSG00000108335 ENSMUST00000206407 Gm45215 processed_pseudogene Interval_44854 chr13 49120148 49120379 + 0 NA intron (ENSMUSG00000037989.15, intron 2 of 27) protein_coding-intron (ENSMUSG00000037989.15, intron 2 of 27) 27749 ENSMUSG00000037989.15 ENSMUSG00000037989 ENSMUST00000159633 Wnk2 protein_coding Interval_130486 chr5 128259736 128260139 + 0 NA intron (ENSMUSG00000034310.8, intron 2 of 8) protein_coding-intron (ENSMUSG00000034310.8, intron 2 of 8) 15880 ENSMUSG00000034310.8 ENSMUSG00000034310 ENSMUST00000200316 Tmem132d protein_coding Interval_44279 chr13 43303084 43304878 + 0 NA promoter-TSS (ENSMUSG00000051335.6) protein_coding-promoter-TSS (ENSMUSG00000051335.6) -576 ENSMUSG00000051335.6 ENSMUSG00000051335 ENSMUST00000222779 Gfod1 protein_coding Interval_160106 chr8 106461888 106462142 + 0 NA Intergenic Intergenic -38490 ENSMUSG00000054069.8 ENSMUSG00000054069 ENSMUST00000066875 6030452D12Rik lincRNA Interval_88181 chr19 60369202 60369405 + 0 NA Intergenic Intergenic 99001 ENSMUSG00000045052.3 ENSMUSG00000045052 ENSMUST00000051277 Prlhr protein_coding Interval_48358 chr13 98496845 98497945 + 0 NA Intergenic Intergenic -5394 ENSMUSG00000092116.1 ENSMUSG00000092116 ENSMUST00000170205 Gm10320 protein_coding Interval_89092 chr2 16232130 16232342 + 0 NA intron (ENSMUSG00000075520.5, intron 37 of 38) protein_coding-intron (ENSMUSG00000075520.5, intron 37 of 38) -208811 ENSMUSG00000103865.1 ENSMUSG00000103865 ENSMUST00000193596 Gm37416 TEC Interval_85270 chr19 24264562 24265517 + 0 NA intron (ENSMUSG00000059363.10, intron 3 of 3) protein_coding-intron (ENSMUSG00000059363.10, intron 4 of 4) 13132 ENSMUSG00000059363.10 ENSMUSG00000059363 ENSMUST00000132688 Fxn protein_coding Interval_147412 chr7 66622266 66622526 + 0 NA Intergenic Intergenic -3248 ENSMUSG00000109249.1 ENSMUSG00000109249 ENSMUST00000209012 Gm44610 TEC Interval_67545 chr16 50516609 50517912 + 0 NA Intergenic Intergenic -8985 ENSMUSG00000097694.8 ENSMUSG00000097694 ENSMUST00000181884 G730013B05Rik lincRNA Interval_67741 chr16 56735903 56736089 + 0 NA intron (ENSMUSG00000022755.4, intron 13 of 15) protein_coding-intron (ENSMUSG00000022755.4, intron 13 of 15) -18814 ENSMUSG00000022757.19 ENSMUSG00000022757 ENSMUST00000141404 Tfg protein_coding Interval_20384 chr10 117216764 117217597 + 0 NA intron (ENSMUSG00000020171.8, intron 1 of 1) protein_coding-intron (ENSMUSG00000020171.8, intron 6 of 6) 178 ENSMUSG00000020171.8 ENSMUSG00000020171 ENSMUST00000219609 Yeats4 protein_coding Interval_27797 chr11 70049742 70050952 + 0 NA Intergenic Intergenic -3738 ENSMUSG00000020884.15 ENSMUSG00000020884 ENSMUST00000123369 Asgr1 protein_coding Interval_66392 chr16 33572346 33573508 + 0 NA intron (ENSMUSG00000035506.16, intron 4 of 10) protein_coding-intron (ENSMUSG00000035506.16, intron 4 of 12) -43463 ENSMUSG00000035506.16 ENSMUSG00000035506 ENSMUST00000149291 Slc12a8 protein_coding Interval_66449 chr16 33920375 33920584 + 0 NA intron (ENSMUSG00000022817.15, intron 6 of 10) protein_coding-intron (ENSMUSG00000022817.15, intron 10 of 14) 28538 ENSMUSG00000022817.15 ENSMUSG00000022817 ENSMUST00000231409 Itgb5 protein_coding Interval_39876 chr12 99298913 99300576 + 0 NA intron (ENSMUSG00000033713.12, intron 3 of 5) protein_coding-intron (ENSMUSG00000033713.12, intron 3 of 5) -3124 ENSMUSG00000093465.1 ENSMUSG00000093465 ENSMUST00000176552 Gm20682 sense_intronic Interval_105780 chr3 89287750 89288381 + 0 NA Intergenic Intergenic -8424 ENSMUSG00000027954.9 ENSMUSG00000027954 ENSMUST00000118860 Efna1 protein_coding Interval_136622 chr6 56772597 56773192 + 0 NA Intergenic Intergenic 24385 ENSMUSG00000059486.11 ENSMUSG00000059486 ENSMUST00000124994 Kbtbd2 protein_coding Interval_157731 chr8 72570617 72572476 + 0 NA promoter-TSS (ENSMUSG00000031791.8) protein_coding-promoter-TSS (ENSMUSG00000031791.8) -458 ENSMUSG00000044600.14 ENSMUSG00000044600 ENSMUST00000163745 Smim7 protein_coding Interval_65129 chr16 20020547 20020964 + 0 NA Intergenic Intergenic -54436 ENSMUSG00000043008.9 ENSMUSG00000043008 ENSMUST00000165530 Klhl6 protein_coding Interval_158567 chr8 84547860 84548252 + 0 NA intron (ENSMUSG00000034656.18, intron 1 of 6) protein_coding-intron (ENSMUSG00000034656.18, intron 11 of 46) 69128 ENSMUSG00000086067.1 ENSMUSG00000086067 ENSMUST00000127527 Gm16183 antisense Interval_7284 chr1 128422659 128422980 + 0 NA Intergenic Intergenic -43332 ENSMUSG00000026356.15 ENSMUSG00000026356 ENSMUST00000064309 Dars protein_coding Interval_109913 chr3 151344258 151344747 + 0 NA Intergenic Intergenic 11153 ENSMUSG00000105401.1 ENSMUSG00000105401 ENSMUST00000197054 Gm42949 lincRNA Interval_141569 chr6 129379662 129379910 + 0 NA intron (ENSMUSG00000030158.12, intron 5 of 6) protein_coding-intron (ENSMUSG00000030158.12, intron 4 of 5) 6088 ENSMUSG00000030158.12 ENSMUSG00000030158 ENSMUST00000112082 Clec12b protein_coding Interval_78156 chr18 9456273 9456882 + 0 NA Intergenic Intergenic -6891 ENSMUSG00000024286.8 ENSMUSG00000024286 ENSMUST00000234382 Ccny protein_coding Interval_140833 chr6 122117229 122117692 + 0 NA Intergenic Intergenic -19272 ENSMUSG00000071204.10 ENSMUSG00000071204 ENSMUST00000159439 Gm10319 transcribed_unprocessed_pseudogene Interval_123292 chr5 31167682 31168179 + 0 NA intron (ENSMUSG00000106864.3, intron 8 of 8) protein_coding-intron (ENSMUSG00000106864.3, intron 9 of 18) -9777 ENSMUSG00000101678.3 ENSMUSG00000101678 ENSMUST00000101411 Gm29609 protein_coding Interval_154114 chr8 12835636 12836384 + 0 NA intron (ENSMUSG00000031441.15, intron 16 of 27) protein_coding-intron (ENSMUSG00000031441.15, intron 16 of 29) -4091 ENSMUSG00000084780.7 ENSMUSG00000084780 ENSMUST00000135138 Gm15350 antisense Interval_94484 chr2 91567866 91568784 + 0 NA intron (ENSMUSG00000040549.16, intron 14 of 43) protein_coding-intron (ENSMUSG00000040549.16, intron 13 of 42) -26440 ENSMUSG00000040549.16 ENSMUSG00000040549 ENSMUST00000129118 Ckap5 protein_coding Interval_97416 chr2 135966302 135967834 + 0 NA exon (ENSMUSG00000039943.16, exon 19 of 36) protein_coding-exon (ENSMUSG00000039943.16, exon 19 of 36) 59183 ENSMUSG00000064444.1 ENSMUSG00000064444 ENSMUST00000082510 Gm26227 snRNA Interval_151953 chr7 127750471 127750972 + 0 NA intron (ENSMUSG00000030811.14, intron 4 of 9) protein_coding-intron (ENSMUSG00000030811.14, intron 5 of 10) 2447 ENSMUSG00000030811.14 ENSMUSG00000030811 ENSMUST00000206893 Fbxl19 protein_coding Interval_129125 chr5 117549531 117549983 + 0 NA intron (ENSMUSG00000061578.8, intron 3 of 20) protein_coding-intron (ENSMUSG00000061578.8, intron 3 of 3) 29058 ENSMUSG00000107199.1 ENSMUSG00000107199 ENSMUST00000201553 Gm42550 TEC Interval_94149 chr2 84689035 84690546 + 0 NA intron (ENSMUSG00000034075.10, intron 11 of 11) protein_coding-intron (ENSMUSG00000034075.10, intron 11 of 11) 4157 ENSMUSG00000027080.6 ENSMUSG00000027080 ENSMUST00000141595 Med19 protein_coding Interval_74115 chr17 46611470 46611801 + 0 NA intron (ENSMUSG00000023972.10, intron 1 of 19) protein_coding-intron (ENSMUSG00000023972.10, intron 1 of 19) 34387 ENSMUSG00000003546.10 ENSMUSG00000003546 ENSMUST00000003642 Klc4 protein_coding Interval_23950 chr11 28726988 28727335 + 0 NA Intergenic Intergenic -19030 ENSMUSG00000076318.1 ENSMUSG00000076318 ENSMUST00000102363 Mir216b miRNA Interval_51885 chr14 33338514 33338873 + 0 NA intron (ENSMUSG00000063506.14, intron 1 of 5) protein_coding-intron (ENSMUSG00000063506.14, intron 1 of 5) 31450 ENSMUSG00000087639.1 ENSMUSG00000087639 ENSMUST00000137359 Gm15512 antisense Interval_47463 chr13 84769109 84769312 + 0 NA Intergenic Intergenic -78269 ENSMUSG00000098081.1 ENSMUSG00000098081 ENSMUST00000182391 Gm26913 processed_pseudogene Interval_151942 chr7 127679660 127679920 + 0 NA intron (ENSMUSG00000030814.17, intron 4 of 4) protein_coding-intron (ENSMUSG00000030814.17, intron 4 of 4) -12145 ENSMUSG00000108801.1 ENSMUSG00000108801 ENSMUST00000205284 Gm39090 lincRNA Interval_58056 chr15 27490279 27491778 + 0 NA intron (ENSMUSG00000022265.7, intron 1 of 11) protein_coding-intron (ENSMUSG00000022265.7, intron 1 of 11) 12022 ENSMUSG00000115568.1 ENSMUSG00000115568 ENSMUST00000227393 Tiaf2 TEC Interval_162283 chr8 126744862 126745288 + 0 NA Intergenic Intergenic 13259 ENSMUSG00000110626.1 ENSMUSG00000110626 ENSMUST00000212695 Gm45805 lincRNA Interval_108758 chr3 131095273 131095858 + 0 NA Intergenic Intergenic 16525 ENSMUSG00000106086.1 ENSMUSG00000106086 ENSMUST00000196419 Lef1os1 antisense Interval_101448 chr2 181491910 181492205 + 0 NA Intergenic Intergenic -1149 ENSMUSG00000055882.8 ENSMUSG00000055882 ENSMUST00000069649 Abhd16b protein_coding Interval_51485 chr14 28231274 28231633 + 0 NA intron (ENSMUSG00000040640.11, intron 13 of 15) protein_coding-intron (ENSMUSG00000040640.11, intron 13 of 15) -184544 ENSMUSG00000114503.1 ENSMUSG00000114503 ENSMUST00000225453 Gm20242 TEC Interval_104816 chr3 75136266 75136717 + 0 NA exon (ENSMUSG00000034151.13, exon 4 of 17) protein_coding-exon (ENSMUSG00000034151.13, exon 4 of 17) 28543 ENSMUSG00000034151.13 ENSMUSG00000034151 ENSMUST00000124618 Zbbx protein_coding Interval_28957 chr11 79567084 79567405 + 0 NA intron (ENSMUSG00000020716.16, intron 17 of 17) protein_coding-intron (ENSMUSG00000020716.16, intron 54 of 57) -27921 ENSMUSG00000064486.1 ENSMUSG00000064486 ENSMUST00000082552 Gm23293 snRNA Interval_74536 chr17 53115375 53115779 + 0 NA Intergenic Intergenic -80874 ENSMUSG00000117244.1 ENSMUSG00000117244 ENSMUST00000233156 Gm9210 processed_pseudogene Interval_173831 chrX 105859879 105860221 + 0 NA intron (ENSMUSG00000031229.16, intron 2 of 5) protein_coding-intron (ENSMUSG00000031229.16, intron 10 of 34) -13774 ENSMUSG00000084575.1 ENSMUSG00000084575 ENSMUST00000122626 Gm23656 snRNA Interval_111167 chr4 13750196 13752025 + 0 NA promoter-TSS (ENSMUSG00000006586.15) protein_coding-promoter-TSS (ENSMUSG00000006586.15) -187 ENSMUSG00000006586.15 ENSMUSG00000006586 ENSMUST00000139736 Runx1t1 protein_coding Interval_63705 chr15 102949738 102950223 + 0 NA TTS (ENSMUSG00000098541.1) misc_RNA-TTS (ENSMUSG00000098541.1) 204 ENSMUSG00000098541.1 ENSMUSG00000098541 ENSMUST00000183814 Gm27535 misc_RNA Interval_30607 chr11 95423104 95423938 + 0 NA intron (ENSMUSG00000057522.15, intron 2 of 4) protein_coding-intron (ENSMUSG00000057522.15, intron 1 of 9) 38764 ENSMUSG00000020873.15 ENSMUSG00000020873 ENSMUST00000143090 Slc35b1 protein_coding Interval_45809 chr13 58225755 58226191 + 0 NA Intergenic Intergenic -6170 ENSMUSG00000114929.1 ENSMUSG00000114929 ENSMUST00000224942 Gm48441 antisense Interval_165778 chr9 52703868 52704102 + 0 NA intron (ENSMUSG00000111020.1, intron 1 of 4) lincRNA-intron (ENSMUSG00000111020.1, intron 1 of 4) 24122 ENSMUSG00000111020.1 ENSMUSG00000111020 ENSMUST00000213681 Gm1715 lincRNA Interval_69094 chr16 90609105 90610580 + 0 NA Intergenic Intergenic 7346 ENSMUSG00000064471.1 ENSMUSG00000064471 ENSMUST00000082537 Gm23406 snoRNA Interval_1356 chr1 20939054 20939261 + 0 NA TTS (ENSMUSG00000025931.15) protein_coding-TTS (ENSMUSG00000025931.15) -6554 ENSMUSG00000100929.1 ENSMUSG00000100929 ENSMUST00000185639 Gm28064 processed_pseudogene Interval_5741 chr1 91370086 91370390 + 0 NA promoter-TSS (ENSMUSG00000047443.14) protein_coding-promoter-TSS (ENSMUSG00000047443.14) -456 ENSMUSG00000047443.14 ENSMUSG00000047443 ENSMUST00000190998 Erfe protein_coding Interval_33314 chr11 115868945 115869865 + 0 NA intron (ENSMUSG00000034427.17, intron 14 of 63) protein_coding-intron (ENSMUSG00000034427.17, intron 14 of 63) -8129 ENSMUSG00000034427.17 ENSMUSG00000034427 ENSMUST00000141947 Myo15b protein_coding Interval_6025 chr1 94067091 94067337 + 0 NA Intergenic Intergenic -14661 ENSMUSG00000026285.7 ENSMUSG00000026285 ENSMUST00000027507 Pdcd1 protein_coding Interval_14978 chr10 41649242 41650080 + 0 NA intron (ENSMUSG00000075225.15, intron 13 of 13) protein_coding-intron (ENSMUSG00000075225.15, intron 1 of 12) -21078 ENSMUSG00000093298.1 ENSMUSG00000093298 ENSMUST00000175557 Mir3473b miRNA Interval_120782 chr4 150616755 150617056 + 0 NA promoter-TSS (ENSMUSG00000039852.17) protein_coding-promoter-TSS (ENSMUSG00000039852.17) 1490 ENSMUSG00000039852.17 ENSMUSG00000039852 ENSMUST00000136646 Rere protein_coding Interval_90083 chr2 27791432 27792371 + 0 NA Intergenic Intergenic 66682 ENSMUSG00000015846.15 ENSMUSG00000015846 ENSMUST00000148756 Rxra protein_coding Interval_94970 chr2 102280514 102280700 + 0 NA Intergenic Intergenic 31600 ENSMUSG00000083306.1 ENSMUSG00000083306 ENSMUST00000122411 Gm13868 processed_pseudogene Interval_134673 chr6 30278369 30278803 + 0 NA intron (ENSMUSG00000039159.16, intron 1 of 4) protein_coding-intron (ENSMUSG00000039159.16, intron 1 of 4) 25942 ENSMUSG00000039159.16 ENSMUSG00000039159 ENSMUST00000148744 Ube2h protein_coding Interval_71678 chr17 25362553 25364015 + 0 NA Intergenic Intergenic -3268 ENSMUSG00000033825.10 ENSMUSG00000033825 ENSMUST00000234712 Tpsb2 protein_coding Interval_91870 chr2 50872110 50872877 + 0 NA Intergenic Intergenic -37191 ENSMUSG00000083270.1 ENSMUSG00000083270 ENSMUST00000119159 Gm13498 processed_pseudogene Interval_60396 chr15 73472570 73473047 + 0 NA Intergenic Intergenic 24489 ENSMUSG00000115885.1 ENSMUSG00000115885 ENSMUST00000230637 Gm19811 processed_pseudogene Interval_115102 chr4 89792613 89793288 + 0 NA Intergenic Intergenic 113514 ENSMUSG00000043753.2 ENSMUSG00000043753 ENSMUST00000052478 Dmrta1 protein_coding Interval_101091 chr2 177887795 177888167 + 0 NA Intergenic Intergenic -4657 ENSMUSG00000082901.1 ENSMUSG00000082901 ENSMUST00000122418 Rps8-ps5 processed_pseudogene Interval_40255 chr12 102787928 102788228 + 0 NA exon (ENSMUSG00000041702.7, exon 10 of 11) protein_coding-exon (ENSMUSG00000041702.7, exon 10 of 11) -23366 ENSMUSG00000114106.1 ENSMUSG00000114106 ENSMUST00000221771 Gm47042 processed_pseudogene Interval_108246 chr3 122943402 122944465 + 0 NA intron (ENSMUSG00000039701.11, intron 14 of 15) protein_coding-intron (ENSMUSG00000039701.11, intron 14 of 15) 19730 ENSMUSG00000054091.9 ENSMUSG00000054091 ENSMUST00000106429 1810037I17Rik protein_coding Interval_103674 chr3 51526919 51527124 + 0 NA intron (ENSMUSG00000037111.9, intron 6 of 7) protein_coding-intron (ENSMUSG00000037111.9, intron 6 of 7) 9626 ENSMUSG00000037111.9 ENSMUSG00000037111 ENSMUST00000194828 Setd7 protein_coding Interval_101561 chr3 6094066 6095293 + 0 NA Intergenic Intergenic 43565 ENSMUSG00000103848.1 ENSMUSG00000103848 ENSMUST00000192818 Gm17934 processed_pseudogene Interval_136547 chr6 55451623 55452920 + 0 NA promoter-TSS (ENSMUSG00000029778.12) protein_coding-promoter-TSS (ENSMUSG00000029778.12) -7965 ENSMUSG00000029778.12 ENSMUSG00000029778 ENSMUST00000165786 Adcyap1r1 protein_coding Interval_9880 chr1 163731159 163732464 + 0 NA Intergenic Intergenic 2242 ENSMUSG00000089700.1 ENSMUSG00000089700 ENSMUST00000161177 Gm2343 processed_pseudogene Interval_100458 chr2 169122027 169123887 + 0 NA Intergenic Intergenic 16504 ENSMUSG00000086238.1 ENSMUSG00000086238 ENSMUST00000144607 Gm14258 lincRNA Interval_83891 chr19 5382678 5383144 + 0 NA intron (ENSMUSG00000039148.5, intron 2 of 2) protein_coding-intron (ENSMUSG00000039148.5, intron 11 of 19) 335 ENSMUSG00000039148.5 ENSMUSG00000039148 ENSMUST00000235908 Sart1 protein_coding Interval_7751 chr1 133432488 133432987 + 0 NA Intergenic Intergenic -8360 ENSMUSG00000070643.11 ENSMUSG00000070643 ENSMUST00000126530 Sox13 protein_coding Interval_54242 chr14 66822048 66822424 + 0 NA intron (ENSMUSG00000022048.8, intron 8 of 13) protein_coding-intron (ENSMUSG00000022048.8, intron 8 of 13) -23858 ENSMUSG00000114829.1 ENSMUSG00000114829 ENSMUST00000223821 Gm9130 processed_pseudogene Interval_140516 chr6 119186838 119187050 + 0 NA intron (ENSMUSG00000041477.14, intron 3 of 8) protein_coding-intron (ENSMUSG00000041477.14, intron 3 of 8) -5412 ENSMUSG00000041477.14 ENSMUSG00000041477 ENSMUST00000127059 Dcp1b protein_coding Interval_45694 chr13 57017571 57018859 + 0 NA Intergenic Intergenic -87267 ENSMUSG00000077279.1 ENSMUSG00000077279 ENSMUST00000104091 Gm22777 snoRNA Interval_123528 chr5 33238975 33239171 + 0 NA Intergenic Intergenic -16245 ENSMUSG00000107161.1 ENSMUSG00000107161 ENSMUST00000202021 Gm43850 processed_pseudogene Interval_18790 chr10 90809789 90810121 + 0 NA intron (ENSMUSG00000058589.14, intron 4 of 11) protein_coding-intron (ENSMUSG00000058589.14, intron 3 of 11) -3128 ENSMUSG00000112015.1 ENSMUSG00000112015 ENSMUST00000219938 Gm47592 TEC Interval_134789 chr6 31550557 31551912 + 0 NA intron (ENSMUSG00000025608.9, intron 1 of 7) protein_coding-intron (ENSMUSG00000025608.9, intron 1 of 7) -23733 ENSMUSG00000086732.1 ENSMUSG00000086732 ENSMUST00000150540 Gm6117 lincRNA Interval_4331 chr1 72770119 72770779 + 0 NA Intergenic Intergenic 59135 ENSMUSG00000046330.10 ENSMUSG00000046330 ENSMUST00000211963 Rpl37a protein_coding Interval_119623 chr4 138816115 138816874 + 0 NA intron (ENSMUSG00000041193.15, intron 1 of 2) protein_coding-intron (ENSMUSG00000041193.15, intron 2 of 5) -6671 ENSMUSG00000041193.15 ENSMUSG00000041193 ENSMUST00000140100 Pla2g5 protein_coding Interval_149790 chr7 101527786 101528043 + 0 NA intron (ENSMUSG00000110301.1, intron 2 of 3) lincRNA-intron (ENSMUSG00000110301.1, intron 2 of 3) 10416 ENSMUSG00000110301.1 ENSMUSG00000110301 ENSMUST00000209330 Gm35363 lincRNA Interval_3005 chr1 52100465 52101275 + 0 NA intron (ENSMUSG00000101628.1, intron 7 of 33) protein_coding-intron (ENSMUSG00000062939.11, intron 17 of 23) -4579 ENSMUSG00000062939.11 ENSMUSG00000062939 ENSMUST00000187554 Stat4 protein_coding Interval_72 GL456212.1 143799 144911 + 0 NA NA NA NA NA Interval_79782 chr18 35092895 35093724 + 0 NA intron (ENSMUSG00000118380.1, intron 5 of 5) processed_transcript-intron (ENSMUSG00000118380.1, intron 5 of 5) -5686 ENSMUSG00000117727.1 ENSMUSG00000117727 ENSMUST00000238134 Gm3587 lincRNA Interval_128530 chr5 113861432 113861665 + 0 NA exon (ENSMUSG00000106623.1, exon 1 of 1) TEC-exon (ENSMUSG00000106623.1, exon 1 of 1) 1387 ENSMUSG00000106623.1 ENSMUSG00000106623 ENSMUST00000198299 Gm43335 TEC Interval_63087 chr15 99014131 99014459 + 0 NA Intergenic Intergenic 8238 ENSMUSG00000064081.4 ENSMUSG00000064081 ENSMUST00000079818 Gm8973 processed_pseudogene Interval_34662 chr12 8472398 8472728 + 0 NA Intergenic Intergenic 8024 ENSMUSG00000112657.1 ENSMUSG00000112657 ENSMUST00000219344 BC106175 transcribed_processed_pseudogene Interval_85669 chr19 29508444 29508830 + 0 NA intron (ENSMUSG00000097855.8, intron 3 of 3) antisense-intron (ENSMUSG00000097855.8, intron 3 of 3) 12333 ENSMUSG00000097855.8 ENSMUSG00000097855 ENSMUST00000180737 A930007I19Rik antisense Interval_130717 chr5 129966138 129968905 + 0 NA intron (ENSMUSG00000066735.8, intron 1 of 1) protein_coding-intron (ENSMUSG00000066735.8, intron 1 of 2) 3155 ENSMUSG00000106757.1 ENSMUSG00000106757 ENSMUST00000202797 Gm43482 TEC Interval_99203 chr2 157989948 157990734 + 0 NA intron (ENSMUSG00000027650.12, intron 6 of 6) protein_coding-intron (ENSMUSG00000027650.12, intron 7 of 7) 16871 ENSMUSG00000027650.12 ENSMUSG00000027650 ENSMUST00000124338 Tti1 protein_coding Interval_88465 chr2 5356580 5357797 + 0 NA intron (ENSMUSG00000039145.16, intron 4 of 10) protein_coding-intron (ENSMUSG00000039145.16, intron 4 of 10) 73538 ENSMUSG00000080820.1 ENSMUSG00000080820 ENSMUST00000117204 Gm13197 processed_pseudogene Interval_7997 chr1 135136472 135136778 + 0 NA exon (ENSMUSG00000031506.11, exon 3 of 5) protein_coding-exon (ENSMUSG00000031506.11, exon 3 of 5) 3317 ENSMUSG00000031506.11 ENSMUSG00000031506 ENSMUST00000167080 Ptpn7 protein_coding Interval_149300 chr7 97226785 97228139 + 0 NA intron (ENSMUSG00000004508.6, intron 2 of 9) protein_coding-intron (ENSMUSG00000004508.6, intron 2 of 9) 88532 ENSMUSG00000035713.15 ENSMUSG00000035713 ENSMUST00000181354 Usp35 protein_coding Interval_158030 chr8 78138945 78140465 + 0 NA Intergenic Intergenic 31745 ENSMUSG00000109948.1 ENSMUSG00000109948 ENSMUST00000210236 Gm45288 processed_pseudogene Interval_111825 chr4 31561563 31563030 + 0 NA Intergenic Intergenic 181824 ENSMUSG00000082254.1 ENSMUSG00000082254 ENSMUST00000118967 Gm11922 processed_pseudogene Interval_32032 chr11 104578030 104578638 + 0 NA intron (ENSMUSG00000061086.12, intron 2 of 6) protein_coding-intron (ENSMUSG00000061086.12, intron 3 of 8) -3705 ENSMUSG00000061086.12 ENSMUSG00000061086 ENSMUST00000136244 Myl4 protein_coding Interval_56770 chr14 121953862 121954855 + 0 NA TTS (ENSMUSG00000051212.8) protein_coding-TTS (ENSMUSG00000051212.8) 8044 ENSMUSG00000041765.6 ENSMUSG00000041765 ENSMUST00000227936 Ubac2 protein_coding Interval_58589 chr15 36427194 36427939 + 0 NA Intergenic Intergenic 9125 ENSMUSG00000115395.1 ENSMUSG00000115395 ENSMUST00000227487 Gm49224 lincRNA Interval_110107 chr3 153354901 153355141 + 0 NA intron (ENSMUSG00000052544.9, intron 3 of 4) protein_coding-intron (ENSMUSG00000052544.9, intron 2 of 2) 41308 ENSMUSG00000099114.1 ENSMUSG00000099114 ENSMUST00000184201 Gm27405 miRNA Interval_119650 chr4 138995870 138996654 + 0 NA intron (ENSMUSG00000041143.16, intron 4 of 12) protein_coding-intron (ENSMUSG00000041143.16, intron 4 of 15) 23353 ENSMUSG00000041143.16 ENSMUSG00000041143 ENSMUST00000124835 Tmco4 protein_coding Interval_11528 chr1 182488710 182489029 + 0 NA intron (ENSMUSG00000102234.1, intron 2 of 3) protein_coding-intron (ENSMUSG00000026509.15, intron 7 of 20) -1160 ENSMUSG00000102234.1 ENSMUSG00000102234 ENSMUST00000195868 Gm37885 antisense Interval_21227 chr10 127322165 127323218 + 0 NA intron (ENSMUSG00000040345.10, intron 1 of 15) protein_coding-intron (ENSMUSG00000040345.10, intron 1 of 15) 727 ENSMUSG00000040345.10 ENSMUSG00000040345 ENSMUST00000218656 Arhgap9 protein_coding Interval_7190 chr1 127653133 127653392 + 0 NA intron (ENSMUSG00000026347.13, intron 2 of 7) protein_coding-intron (ENSMUSG00000026347.13, intron 2 of 8) 26286 ENSMUSG00000026347.13 ENSMUSG00000026347 ENSMUST00000162406 Tmem163 protein_coding Interval_100896 chr2 173218680 173220365 + 0 NA promoter-TSS (ENSMUSG00000027514.14) protein_coding-promoter-TSS (ENSMUSG00000027514.14) -625 ENSMUSG00000027514.14 ENSMUSG00000027514 ENSMUST00000109116 Zbp1 protein_coding Interval_54010 chr14 64407501 64408868 + 0 NA intron (ENSMUSG00000054733.9, intron 1 of 2) protein_coding-intron (ENSMUSG00000054733.9, intron 6 of 10) 8764 ENSMUSG00000054733.9 ENSMUSG00000054733 ENSMUST00000209513 Msra protein_coding Interval_160028 chr8 105879256 105881510 + 0 NA promoter-TSS (ENSMUSG00000036270.16) protein_coding-promoter-TSS (ENSMUSG00000036270.16) -9885 ENSMUSG00000036270.16 ENSMUSG00000036270 ENSMUST00000156357 Edc4 protein_coding Interval_127273 chr5 102046081 102047018 + 0 NA intron (ENSMUSG00000043940.15, intron 1 of 15) protein_coding-intron (ENSMUSG00000043940.15, intron 1 of 66) 11520 ENSMUSG00000105761.1 ENSMUSG00000105761 ENSMUST00000197792 Gm43787 TEC Interval_174528 chrX 156734190 156734708 + 0 NA Intergenic Intergenic -53757 ENSMUSG00000084246.1 ENSMUSG00000084246 ENSMUST00000119325 Gm15162 processed_pseudogene Interval_50605 chr14 16447438 16447856 + 0 NA intron (ENSMUSG00000017491.9, intron 3 of 7) protein_coding-intron (ENSMUSG00000017491.9, intron 3 of 7) 24461 ENSMUSG00000017485.11 ENSMUSG00000017485 ENSMUST00000224460 Top2b protein_coding Interval_151534 chr7 123329929 123331135 + 0 NA intron (ENSMUSG00000030766.15, intron 1 of 4) protein_coding-intron (ENSMUSG00000030766.15, intron 2 of 18) 39319 ENSMUSG00000030766.15 ENSMUSG00000030766 ENSMUST00000205805 Arhgap17 protein_coding Interval_118351 chr4 130828982 130829927 + 0 NA Intergenic Intergenic -3141 ENSMUSG00000097224.1 ENSMUSG00000097224 ENSMUST00000181227 Gm26716 antisense Interval_81388 chr18 60312322 60312570 + 0 NA intron (ENSMUSG00000118361.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000118361.1, intron 1 of 2) 19066 ENSMUSG00000090942.1 ENSMUSG00000090942 ENSMUST00000171297 F830016B08Rik protein_coding Interval_23389 chr11 22134061 22134339 + 0 NA intron (ENSMUSG00000042302.14, intron 6 of 6) protein_coding-intron (ENSMUSG00000042302.14, intron 10 of 23) -132490 ENSMUSG00000005917.15 ENSMUSG00000005917 ENSMUST00000147486 Otx1 protein_coding Interval_134949 chr6 34051034 34051251 + 0 NA intron (ENSMUSG00000056215.13, intron 5 of 15) protein_coding-intron (ENSMUSG00000056215.13, intron 5 of 19) 21694 ENSMUSG00000056215.13 ENSMUSG00000056215 ENSMUST00000141078 Lrguk protein_coding Interval_170256 chr9 106489631 106490739 + 0 NA Intergenic Intergenic -9816 ENSMUSG00000066383.7 ENSMUSG00000066383 ENSMUST00000215037 Iqcf1 protein_coding Interval_157709 chr8 72434865 72437327 + 0 NA promoter-TSS (ENSMUSG00000019732.14) protein_coding-promoter-TSS (ENSMUSG00000019732.14) -940 ENSMUSG00000019732.14 ENSMUSG00000019732 ENSMUST00000109974 Calr3 protein_coding Interval_143527 chr7 11988272 11989189 + 0 NA Intergenic Intergenic -2500 ENSMUSG00000110184.1 ENSMUSG00000110184 ENSMUST00000209527 Gm45429 processed_pseudogene Interval_143077 chr6 149119702 149120388 + 0 NA Intergenic Intergenic -10125 ENSMUSG00000067292.3 ENSMUSG00000067292 ENSMUST00000087348 Gm10203 protein_coding Interval_20946 chr10 122619388 122619617 + 0 NA Intergenic Intergenic -28837 ENSMUSG00000098522.1 ENSMUSG00000098522 ENSMUST00000184477 Mir6412 miRNA Interval_132622 chr5 146784470 146784843 + 0 NA intron (ENSMUSG00000029640.17, intron 1 of 8) protein_coding-intron (ENSMUSG00000029640.17, intron 1 of 8) -11262 ENSMUSG00000104845.1 ENSMUSG00000104845 ENSMUST00000197536 1700041I07Rik lincRNA Interval_163068 chr9 14985194 14985430 + 0 NA Intergenic Intergenic 35849 ENSMUSG00000110766.1 ENSMUSG00000110766 ENSMUST00000217210 Gm47214 lincRNA Interval_77046 chr17 85983642 85984172 + 0 NA TTS (ENSMUSG00000024135.10) protein_coding-TTS (ENSMUSG00000024135.10) -55328 ENSMUSG00000117501.1 ENSMUSG00000117501 ENSMUST00000234707 Gm30117 lincRNA Interval_88458 chr2 5303909 5304291 + 0 NA intron (ENSMUSG00000039145.16, intron 8 of 10) protein_coding-intron (ENSMUSG00000039145.16, intron 8 of 10) 20450 ENSMUSG00000080820.1 ENSMUSG00000080820 ENSMUST00000117204 Gm13197 processed_pseudogene Interval_163281 chr9 20543727 20545368 + 0 NA Intergenic Intergenic -10782 ENSMUSG00000111661.1 ENSMUSG00000111661 ENSMUST00000213332 Gm46142 processed_pseudogene Interval_84471 chr19 11536693 11537680 + 0 NA intron (ENSMUSG00000024678.6, intron 1 of 6) protein_coding-intron (ENSMUSG00000024678.6, intron 1 of 6) 385 ENSMUSG00000024678.6 ENSMUSG00000024678 ENSMUST00000025581 Ms4a4d protein_coding Interval_160069 chr8 106168345 106169834 + 0 NA promoter-TSS (ENSMUSG00000031904.5) protein_coding-promoter-TSS (ENSMUSG00000031904.5) 214 ENSMUSG00000031904.5 ENSMUSG00000031904 ENSMUST00000212802 Slc7a6 protein_coding Interval_110688 chr4 6442795 6444187 + 0 NA intron (ENSMUSG00000028245.15, intron 1 of 29) protein_coding-intron (ENSMUSG00000028245.15, intron 1 of 30) 10605 ENSMUSG00000028245.15 ENSMUSG00000028245 ENSMUST00000124656 Nsmaf protein_coding Interval_35020 chr12 16706431 16706638 + 0 NA intron (ENSMUSG00000036523.16, intron 17 of 34) protein_coding-intron (ENSMUSG00000036523.16, intron 15 of 32) 34294 ENSMUSG00000114049.1 ENSMUSG00000114049 ENSMUST00000223113 Gm48140 antisense Interval_132620 chr5 146778002 146778236 + 0 NA intron (ENSMUSG00000029640.17, intron 1 of 8) protein_coding-intron (ENSMUSG00000029640.17, intron 1 of 8) -17799 ENSMUSG00000104845.1 ENSMUSG00000104845 ENSMUST00000197536 1700041I07Rik lincRNA Interval_6295 chr1 105626075 105626272 + 0 NA intron (ENSMUSG00000056536.14, intron 14 of 25) protein_coding-intron (ENSMUSG00000056536.14, intron 12 of 28) 10431 ENSMUSG00000101656.1 ENSMUSG00000101656 ENSMUST00000187782 Gm8004 processed_pseudogene Interval_95319 chr2 106465324 106466325 + 0 NA exon (ENSMUSG00000087226.1, exon 3 of 3) lincRNA-exon (ENSMUSG00000087226.1, exon 3 of 3) 57279 ENSMUSG00000087226.1 ENSMUSG00000087226 ENSMUST00000130634 Gm14015 lincRNA Interval_85940 chr19 33642859 33643507 + 0 NA intron (ENSMUSG00000024766.15, intron 1 of 10) protein_coding-intron (ENSMUSG00000024766.15, intron 1 of 10) -17931 ENSMUSG00000086812.2 ENSMUSG00000086812 ENSMUST00000124230 Gm8978 protein_coding Interval_15491 chr10 49023465 49023693 + 0 NA Intergenic Intergenic 71150 ENSMUSG00000111374.1 ENSMUSG00000111374 ENSMUST00000214664 Gm50490 processed_pseudogene Interval_149072 chr7 92873764 92875612 + 0 NA promoter-TSS (ENSMUSG00000030641.10) protein_coding-promoter-TSS (ENSMUSG00000030641.10) 218 ENSMUSG00000061119.7 ENSMUSG00000061119 ENSMUST00000207594 Prcp protein_coding Interval_100226 chr2 167777203 167778567 + 0 NA intron (ENSMUSG00000084797.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000084797.1, intron 1 of 3) 418 ENSMUSG00000084797.1 ENSMUSG00000084797 ENSMUST00000127441 Gm14321 lincRNA Interval_78859 chr18 21012927 21013275 + 0 NA intron (ENSMUSG00000024317.15, intron 3 of 4) protein_coding-intron (ENSMUSG00000024317.15, intron 3 of 5) 11006 ENSMUSG00000024317.15 ENSMUSG00000024317 ENSMUST00000234169 Rnf138 protein_coding Interval_94965 chr2 102222814 102223321 + 0 NA Intergenic Intergenic -12688 ENSMUSG00000081774.1 ENSMUSG00000081774 ENSMUST00000118901 Gm13866 processed_pseudogene Interval_45738 chr13 57525673 57526453 + 0 NA intron (ENSMUSG00000056222.15, intron 6 of 10) protein_coding-intron (ENSMUSG00000056222.15, intron 4 of 9) 249385 ENSMUSG00000114411.1 ENSMUSG00000114411 ENSMUST00000224461 Gm48176 processed_pseudogene Interval_89937 chr2 26600841 26601048 + 0 NA intron (ENSMUSG00000026922.13, intron 1 of 5) protein_coding-intron (ENSMUSG00000026922.13, intron 1 of 5) 2982 ENSMUSG00000026922.13 ENSMUSG00000026922 ENSMUST00000154753 Agpat2 protein_coding Interval_171047 chr9 113978859 113979838 + 0 NA intron (ENSMUSG00000032507.15, intron 15 of 15) protein_coding-intron (ENSMUSG00000032507.15, intron 14 of 14) -8350 ENSMUSG00000111793.1 ENSMUSG00000111793 ENSMUST00000214534 Gm47950 antisense Interval_3590 chr1 59794249 59794863 + 0 NA intron (ENSMUSG00000067336.6, intron 1 of 12) protein_coding-intron (ENSMUSG00000067336.6, intron 1 of 12) -6707 ENSMUSG00000104052.1 ENSMUSG00000104052 ENSMUST00000194136 Gm38125 TEC Interval_58831 chr15 38395257 38395637 + 0 NA intron (ENSMUSG00000115405.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000115405.1, intron 1 of 1) 8707 ENSMUSG00000115405.1 ENSMUSG00000115405 ENSMUST00000227422 Gm41307 lincRNA Interval_11676 chr1 184578086 184578340 + 0 NA Intergenic Intergenic 1993 ENSMUSG00000089057.1 ENSMUSG00000089057 ENSMUST00000158432 Gm23349 snRNA Interval_169105 chr9 92528121 92528539 + 0 NA promoter-TSS (ENSMUSG00000077400.1) snoRNA-promoter-TSS (ENSMUSG00000077400.1) -622 ENSMUSG00000077400.1 ENSMUSG00000077400 ENSMUST00000104212 Gm25417 snoRNA Interval_144337 chr7 24550543 24551046 + 0 NA intron (ENSMUSG00000051768.9, intron 2 of 5) protein_coding-intron (ENSMUSG00000051768.9, intron 2 of 16) 3593 ENSMUSG00000051768.9 ENSMUSG00000051768 ENSMUST00000205453 Xrcc1 protein_coding Interval_102925 chr3 32844487 32844758 + 0 NA intron (ENSMUSG00000056900.13, intron 2 of 20) protein_coding-intron (ENSMUSG00000056900.13, intron 2 of 20) 26911 ENSMUSG00000056900.13 ENSMUSG00000056900 ENSMUST00000156769 Usp13 protein_coding Interval_88026 chr19 58072575 58072863 + 0 NA intron (ENSMUSG00000054843.9, intron 28 of 28) protein_coding-intron (ENSMUSG00000054843.9, intron 28 of 28) 21552 ENSMUSG00000093757.1 ENSMUSG00000093757 ENSMUST00000176631 Mir5623 miRNA Interval_163109 chr9 15327744 15328479 + 0 NA intron (ENSMUSG00000046111.17, intron 2 of 5) protein_coding-intron (ENSMUSG00000046111.17, intron 3 of 12) -1572 ENSMUSG00000077394.1 ENSMUSG00000077394 ENSMUST00000104206 Gm24339 snoRNA Interval_1911 chr1 34498154 34500106 + 0 NA intron (ENSMUSG00000026125.9, intron 1 of 3) protein_coding-intron (ENSMUSG00000026125.9, intron 1 of 4) 709 ENSMUSG00000026125.9 ENSMUSG00000026125 ENSMUST00000191604 Prss39 protein_coding Interval_43278 chr13 28628044 28628860 + 0 NA intron (ENSMUSG00000085936.7, intron 5 of 7) processed_transcript-intron (ENSMUSG00000085936.7, intron 4 of 5) 82421 ENSMUSG00000099158.1 ENSMUSG00000099158 ENSMUST00000184136 Mir6368 miRNA Interval_130929 chr5 134107133 134108751 + 0 NA intron (ENSMUSG00000015944.9, intron 1 of 8) protein_coding-intron (ENSMUSG00000015944.9, intron 1 of 8) 7937 ENSMUSG00000015944.9 ENSMUSG00000015944 ENSMUST00000140240 Castor2 protein_coding Interval_37090 chr12 57739175 57739489 + 0 NA Intergenic Intergenic -40270 ENSMUSG00000111886.1 ENSMUSG00000111886 ENSMUST00000217711 Gm47617 processed_pseudogene Interval_23792 chr11 26299370 26299889 + 0 NA Intergenic Intergenic 38074 ENSMUSG00000065889.1 ENSMUSG00000065889 ENSMUST00000083955 Gm22868 snRNA Interval_170851 chr9 111193990 111194204 + 0 NA TTS (ENSMUSG00000032497.19) protein_coding-intron (ENSMUSG00000032497.19, intron 18 of 27) 19881 ENSMUSG00000032497.19 ENSMUSG00000032497 ENSMUST00000196906 Lrrfip2 protein_coding Interval_62780 chr15 96842475 96843644 + 0 NA Intergenic Intergenic -75981 ENSMUSG00000095638.2 ENSMUSG00000095638 ENSMUST00000177677 Gm8888 processed_pseudogene Interval_104263 chr3 62372012 62372659 + 0 NA intron (ENSMUSG00000036885.14, intron 3 of 4) protein_coding-intron (ENSMUSG00000036885.14, intron 3 of 13) -31803 ENSMUSG00000103502.1 ENSMUSG00000103502 ENSMUST00000192267 9330121J05Rik antisense Interval_58158 chr15 30029129 30029739 + 0 NA Intergenic Intergenic 17140 ENSMUSG00000115080.1 ENSMUSG00000115080 ENSMUST00000226317 Gm5212 processed_pseudogene Interval_114461 chr4 79142622 79143523 + 0 NA Intergenic Intergenic 101637 ENSMUSG00000089543.1 ENSMUSG00000089543 ENSMUST00000158918 Gm25836 snoRNA Interval_143823 chr7 16507200 16507955 + 0 NA intron (ENSMUSG00000058230.12, intron 6 of 7) protein_coding-intron (ENSMUSG00000058230.12, intron 5 of 6) 7561 ENSMUSG00000101135.1 ENSMUSG00000101135 ENSMUST00000191109 Gm17981 processed_pseudogene Interval_15348 chr10 44944915 44945786 + 0 NA Intergenic Intergenic -2056 ENSMUSG00000110898.1 ENSMUSG00000110898 ENSMUST00000216422 Gm40638 lincRNA Interval_40844 chr12 108801308 108801729 + 0 NA intron (ENSMUSG00000021264.12, intron 1 of 4) protein_coding-intron (ENSMUSG00000021264.12, intron 1 of 4) -4721 ENSMUSG00000021264.12 ENSMUSG00000021264 ENSMUST00000126912 Yy1 protein_coding Interval_115155 chr4 91900335 91900923 + 0 NA Intergenic Intergenic 39323 ENSMUSG00000087517.1 ENSMUSG00000087517 ENSMUST00000151367 4930577H14Rik lincRNA Interval_138319 chr6 87157984 87158153 + 0 NA exon (ENSMUSG00000033420.12, exon 18 of 18) protein_coding-exon (ENSMUSG00000033420.12, exon 18 of 18) 15941 ENSMUSG00000107436.1 ENSMUSG00000107436 ENSMUST00000204055 Gm44416 TEC Interval_101106 chr2 178014643 178015066 + 0 NA Intergenic Intergenic -8525 ENSMUSG00000074519.11 ENSMUSG00000074519 ENSMUST00000108926 Zfp971 protein_coding Interval_8876 chr1 151716285 151716815 + 0 NA intron (ENSMUSG00000026483.13, intron 13 of 13) protein_coding-intron (ENSMUSG00000026483.13, intron 9 of 9) 38468 ENSMUSG00000100594.1 ENSMUSG00000100594 ENSMUST00000186444 2810414N06Rik lincRNA Interval_54446 chr14 69815926 69816166 + 0 NA Intergenic Intergenic -10821 ENSMUSG00000022075.7 ENSMUSG00000022075 ENSMUST00000225088 Rhobtb2 protein_coding Interval_82744 chr18 76343581 76343791 + 0 NA Intergenic Intergenic 21862 ENSMUSG00000117816.1 ENSMUSG00000117816 ENSMUST00000235901 Gm50360 processed_pseudogene Interval_96320 chr2 121594522 121594821 + 0 NA intron (ENSMUSG00000027238.17, intron 1 of 7) protein_coding-intron (ENSMUSG00000027238.17, intron 1 of 13) -43320 ENSMUSG00000027238.17 ENSMUSG00000027238 ENSMUST00000153704 Frmd5 protein_coding Interval_150596 chr7 112710396 112711415 + 0 NA intron (ENSMUSG00000055320.18, intron 2 of 2) protein_coding-intron (ENSMUSG00000055320.18, intron 1 of 13) -3046 ENSMUSG00000106046.1 ENSMUSG00000106046 ENSMUST00000199696 Gm44462 miRNA Interval_70092 chr17 5270527 5271978 + 0 NA intron (ENSMUSG00000069729.14, intron 6 of 19) protein_coding-intron (ENSMUSG00000069729.14, intron 6 of 18) -117511 ENSMUSG00000101133.1 ENSMUSG00000101133 ENSMUST00000190732 Gm29050 antisense Interval_29478 chr11 84254564 84255445 + 0 NA intron (ENSMUSG00000020532.18, intron 16 of 55) protein_coding-intron (ENSMUSG00000020532.18, intron 14 of 53) 65411 ENSMUSG00000103122.1 ENSMUSG00000103122 ENSMUST00000194891 Gm37391 TEC Interval_66349 chr16 33309982 33310715 + 0 NA Intergenic Intergenic 58906 ENSMUSG00000022808.5 ENSMUSG00000022808 ENSMUST00000231242 Snx4 protein_coding Interval_81355 chr18 59026235 59027070 + 0 NA intron (ENSMUSG00000053441.5, intron 9 of 12) protein_coding-intron (ENSMUSG00000053441.5, intron 19 of 22) -35814 ENSMUSG00000050875.11 ENSMUSG00000050875 ENSMUST00000175830 Minar2 protein_coding Interval_147207 chr7 64519567 64519773 + 0 NA intron (ENSMUSG00000030519.14, intron 1 of 2) protein_coding-intron (ENSMUSG00000030519.14, intron 1 of 14) 4359 ENSMUSG00000108384.1 ENSMUSG00000108384 ENSMUST00000206082 Gm45082 TEC Interval_35893 chr12 31662955 31664252 + 0 NA intron (ENSMUSG00000035933.5, intron 2 of 22) protein_coding-intron (ENSMUSG00000035933.5, intron 2 of 22) -8827 ENSMUSG00000020648.3 ENSMUSG00000020648 ENSMUST00000219855 Dus4l protein_coding Interval_108497 chr3 127716703 127717387 + 0 NA promoter-TSS (ENSMUSG00000104888.1) TEC-promoter-TSS (ENSMUSG00000104888.1) -18 ENSMUSG00000104888.1 ENSMUSG00000104888 ENSMUST00000199867 1500005C15Rik TEC Interval_39515 chr12 89129110 89129821 + 0 NA intron (ENSMUSG00000066392.12, intron 2 of 19) protein_coding-intron (ENSMUSG00000066392.12, intron 2 of 19) 125896 ENSMUSG00000103136.1 ENSMUSG00000103136 ENSMUST00000194420 Gm37980 TEC Interval_61977 chr15 85602639 85602831 + 0 NA Intergenic Intergenic 22483 ENSMUSG00000097209.2 ENSMUSG00000097209 ENSMUST00000180441 AU022754 antisense Interval_30652 chr11 95688745 95689152 + 0 NA Intergenic Intergenic 10195 ENSMUSG00000045075.3 ENSMUSG00000045075 ENSMUST00000191115 Gm9796 lincRNA Interval_171734 chr9 120581895 120583103 + 0 NA exon (ENSMUSG00000110962.1, exon 3 of 3) unprocessed_pseudogene-exon (ENSMUSG00000110962.1, exon 3 of 3) 2364 ENSMUSG00000110962.1 ENSMUSG00000110962 ENSMUST00000213466 Gm47062 unprocessed_pseudogene Interval_112216 chr4 36270623 36271106 + 0 NA intron (ENSMUSG00000045083.14, intron 3 of 6) protein_coding-intron (ENSMUSG00000045083.14, intron 3 of 7) -173206 ENSMUSG00000084352.1 ENSMUSG00000084352 ENSMUST00000117809 Gm12370 processed_pseudogene Interval_118451 chr4 131710379 131710789 + 0 NA promoter-TSS (ENSMUSG00000086856.1) lincRNA-promoter-TSS (ENSMUSG00000086856.1) -76 ENSMUSG00000086856.1 ENSMUSG00000086856 ENSMUST00000152128 Gm16080 lincRNA Interval_34802 chr12 11337148 11337431 + 0 NA intron (ENSMUSG00000054459.8, intron 2 of 3) protein_coding-intron (ENSMUSG00000054459.8, intron 2 of 3) 37402 ENSMUSG00000098879.1 ENSMUSG00000098879 ENSMUST00000184262 Mir7675 miRNA Interval_38023 chr12 74052995 74053634 + 0 NA intron (ENSMUSG00000044912.11, intron 1 of 3) protein_coding-intron (ENSMUSG00000044912.11, intron 1 of 7) 88833 ENSMUSG00000021113.5 ENSMUSG00000021113 ENSMUST00000220909 Snapc1 protein_coding Interval_116127 chr4 107981314 107981777 + 0 NA intron (ENSMUSG00000008932.10, intron 2 of 10) protein_coding-intron (ENSMUSG00000008932.10, intron 2 of 10) 13211 ENSMUSG00000008932.10 ENSMUSG00000008932 ENSMUST00000124190 Slc1a7 protein_coding Interval_75056 chr17 62644499 62644739 + 0 NA intron (ENSMUSG00000048915.12, intron 2 of 3) protein_coding-intron (ENSMUSG00000048915.12, intron 2 of 4) -187499 ENSMUSG00000064570.1 ENSMUSG00000064570 ENSMUST00000082636 Gm25800 snoRNA Interval_14895 chr10 40902561 40902774 + 0 NA intron (ENSMUSG00000019831.14, intron 1 of 8) protein_coding-intron (ENSMUSG00000019831.14, intron 1 of 8) 18840 ENSMUSG00000019831.14 ENSMUSG00000019831 ENSMUST00000105509 Wasf1 protein_coding Interval_28450 chr11 75973823 75974249 + 0 NA Intergenic Intergenic -25876 ENSMUSG00000053783.5 ENSMUSG00000053783 ENSMUST00000066408 1700016K19Rik protein_coding Interval_33202 chr11 115202210 115202811 + 0 NA intron (ENSMUSG00000045980.13, intron 6 of 8) protein_coding-intron (ENSMUSG00000045980.13, intron 6 of 9) 14959 ENSMUSG00000045980.13 ENSMUSG00000045980 ENSMUST00000156230 Tmem104 protein_coding Interval_52322 chr14 44936959 44937641 + 0 NA intron (ENSMUSG00000085500.9, intron 2 of 2) transcribed_unprocessed_pseudogene-intron (ENSMUSG00000085500.9, intron 2 of 3) 1966 ENSMUSG00000115500.1 ENSMUSG00000115500 ENSMUST00000227025 Gm49147 processed_pseudogene Interval_155852 chr8 40285837 40287280 + 0 NA exon (ENSMUSG00000031603.14, exon 1 of 3) protein_coding-exon (ENSMUSG00000031603.14, exon 1 of 3) 21371 ENSMUSG00000098431.1 ENSMUSG00000098431 ENSMUST00000183849 Mir7666 miRNA Interval_139653 chr6 105626073 105626409 + 0 NA Intergenic Intergenic 51340 ENSMUSG00000085067.2 ENSMUSG00000085067 ENSMUST00000142962 Gm15631 lincRNA Interval_42956 chr13 21910889 21911753 + 0 NA Intergenic Intergenic 8165 ENSMUSG00000081576.1 ENSMUSG00000081576 ENSMUST00000121524 Gm11279 processed_pseudogene Interval_92424 chr2 59652633 59653950 + 0 NA intron (ENSMUSG00000035168.16, intron 1 of 25) protein_coding-intron (ENSMUSG00000035168.16, intron 2 of 26) -88607 ENSMUSG00000081157.1 ENSMUSG00000081157 ENSMUST00000118837 Gm13552 processed_pseudogene Interval_12980 chr10 8878428 8879247 + 0 NA intron (ENSMUSG00000015305.6, intron 1 of 3) protein_coding-intron (ENSMUSG00000015305.6, intron 1 of 19) -5800 ENSMUSG00000097597.2 ENSMUSG00000097597 ENSMUST00000180770 Gm26674 antisense Interval_108043 chr3 120980212 120980444 + 0 NA Intergenic Intergenic 40448 ENSMUSG00000105243.1 ENSMUSG00000105243 ENSMUST00000198123 Gm43444 TEC Interval_66373 chr16 33455372 33455872 + 0 NA intron (ENSMUSG00000022811.17, intron 4 of 7) protein_coding-intron (ENSMUSG00000022811.17, intron 4 of 8) 74759 ENSMUSG00000022811.17 ENSMUSG00000022811 ENSMUST00000089677 Zfp148 protein_coding Interval_100941 chr2 173525679 173526114 + 0 NA intron (ENSMUSG00000027518.3, intron 1 of 3) protein_coding-intron (ENSMUSG00000027518.3, intron 1 of 3) 3310 ENSMUSG00000027518.3 ENSMUSG00000027518 ENSMUST00000029023 1700021F07Rik protein_coding Interval_123251 chr5 30900965 30901974 + 0 NA intron (ENSMUSG00000029165.17, intron 10 of 14) protein_coding-intron (ENSMUSG00000029165.17, intron 12 of 16) 4169 ENSMUSG00000107201.1 ENSMUSG00000107201 ENSMUST00000202893 5930420M18Rik TEC Interval_59384 chr15 52012841 52014470 + 0 NA TTS (ENSMUSG00000115068.1) processed_pseudogene-TTS (ENSMUSG00000115068.1) 371 ENSMUSG00000115068.1 ENSMUSG00000115068 ENSMUST00000228659 Gm48926 processed_pseudogene Interval_298 chr1 3037411 3038199 + 0 NA Intergenic Intergenic -35448 ENSMUSG00000102693.1 ENSMUSG00000102693 ENSMUST00000193812 4933401J01Rik TEC Interval_54756 chr14 74764195 74765254 + 0 NA exon (ENSMUSG00000068015.8, exon 10 of 10) protein_coding-exon (ENSMUSG00000068015.8, exon 10 of 10) 30581 ENSMUSG00000068015.8 ENSMUSG00000068015 ENSMUST00000227433 Lrch1 protein_coding Interval_8184 chr1 136326093 136326506 + 0 NA intron (ENSMUSG00000041570.14, intron 1 of 17) protein_coding-intron (ENSMUSG00000041570.14, intron 1 of 18) -44549 ENSMUSG00000041570.14 ENSMUSG00000041570 ENSMUST00000194730 Camsap2 protein_coding Interval_80953 chr18 50965427 50965596 + 0 NA Intergenic Intergenic -37593 ENSMUSG00000118088.1 ENSMUSG00000118088 ENSMUST00000236182 Gm3815 processed_pseudogene Interval_83177 chr18 82567374 82569133 + 0 NA intron (ENSMUSG00000041607.17, intron 2 of 4) protein_coding-intron (ENSMUSG00000041607.17, intron 4 of 6) 13707 ENSMUSG00000041607.17 ENSMUSG00000041607 ENSMUST00000150952 Mbp protein_coding Interval_19779 chr10 108729287 108729562 + 0 NA intron (ENSMUSG00000035864.14, intron 3 of 7) protein_coding-intron (ENSMUSG00000035864.14, intron 3 of 10) -29264 ENSMUSG00000112039.1 ENSMUSG00000112039 ENSMUST00000218023 Gm5136 protein_coding Interval_13158 chr10 12614379 12616071 + 0 NA promoter-TSS (ENSMUSG00000019820.11) protein_coding-promoter-TSS (ENSMUSG00000019820.11) 73637 ENSMUSG00000019820.11 ENSMUSG00000019820 ENSMUST00000219135 Utrn protein_coding Interval_139651 chr6 105462306 105462790 + 0 NA Intergenic Intergenic 30120 ENSMUSG00000108237.1 ENSMUSG00000108237 ENSMUST00000205113 Gm19757 lincRNA Interval_73562 chr17 40469817 40471692 + 0 NA TTS (ENSMUSG00000117017.1) unprocessed_pseudogene-TTS (ENSMUSG00000117017.1) 8658 ENSMUSG00000117017.1 ENSMUSG00000117017 ENSMUST00000233217 Gm49844 unprocessed_pseudogene Interval_88387 chr2 4632726 4633521 + 0 NA intron (ENSMUSG00000039449.14, intron 8 of 8) protein_coding-intron (ENSMUSG00000039449.14, intron 9 of 9) 18958 ENSMUSG00000039449.14 ENSMUSG00000039449 ENSMUST00000144650 Prpf18 protein_coding Interval_86457 chr19 40684018 40684959 + 0 NA intron (ENSMUSG00000048120.16, intron 1 of 2) protein_coding-intron (ENSMUSG00000048120.16, intron 1 of 9) 40342 ENSMUSG00000117952.1 ENSMUSG00000117952 ENSMUST00000235613 Gm50132 sense_intronic Interval_99770 chr2 164798421 164798969 + 0 NA TTS (ENSMUSG00000017307.16) protein_coding-TTS (ENSMUSG00000017307.16) 6127 ENSMUSG00000017307.16 ENSMUSG00000017307 ENSMUST00000136767 Acot8 protein_coding Interval_96375 chr2 122046216 122046839 + 0 NA intron (ENSMUSG00000027236.8, intron 4 of 7) protein_coding-intron (ENSMUSG00000027236.8, intron 4 of 7) 17875 ENSMUSG00000027236.8 ENSMUSG00000027236 ENSMUST00000142747 Eif3j1 protein_coding Interval_110208 chr3 154304980 154305287 + 0 NA Intergenic Intergenic 24926 ENSMUSG00000096225.7 ENSMUSG00000096225 ENSMUST00000204403 Lhx8 protein_coding Interval_94787 chr2 94303953 94305139 + 0 NA intron (ENSMUSG00000027194.16, intron 23 of 24) protein_coding-intron (ENSMUSG00000027194.16, intron 13 of 14) -39938 ENSMUSG00000075020.6 ENSMUSG00000075020 ENSMUST00000134563 Mir670hg lincRNA Interval_30780 chr11 96421753 96421940 + 0 NA Intergenic Intergenic 29734 ENSMUSG00000075587.5 ENSMUSG00000075587 ENSMUST00000117614 Gm11531 processed_pseudogene Interval_98204 chr2 149829883 149832279 + 0 NA intron (ENSMUSG00000074736.10, intron 1 of 2) protein_coding-intron (ENSMUSG00000074736.10, intron 1 of 2) 159 ENSMUSG00000074736.10 ENSMUSG00000074736 ENSMUST00000149705 Syndig1 protein_coding Interval_128621 chr5 114345270 114345984 + 0 NA intron (ENSMUSG00000066952.11, intron 14 of 30) protein_coding-intron (ENSMUSG00000066952.11, intron 14 of 28) 24580 ENSMUSG00000001098.15 ENSMUSG00000001098 ENSMUST00000123538 Kctd10 protein_coding Interval_64582 chr16 13474549 13476048 + 0 NA Intergenic Intergenic -4118 ENSMUSG00000099214.1 ENSMUSG00000099214 ENSMUST00000183990 Mir6365 miRNA Interval_130634 chr5 129353463 129355375 + 0 NA Intergenic Intergenic -9701 ENSMUSG00000104681.1 ENSMUSG00000104681 ENSMUST00000199076 Gm43001 lincRNA Interval_116346 chr4 110038343 110038541 + 0 NA Intergenic Intergenic 60389 ENSMUSG00000047143.3 ENSMUSG00000047143 ENSMUST00000061187 Dmrta2 protein_coding Interval_32094 chr11 105220321 105221212 + 0 NA intron (ENSMUSG00000020694.17, intron 3 of 6) protein_coding-intron (ENSMUSG00000020694.17, intron 5 of 20) 11913 ENSMUSG00000020694.17 ENSMUSG00000020694 ENSMUST00000146910 Tlk2 protein_coding Interval_125026 chr5 63946684 63947148 + 0 NA intron (ENSMUSG00000047881.14, intron 1 of 7) protein_coding-intron (ENSMUSG00000047881.14, intron 1 of 7) -16002 ENSMUSG00000047881.14 ENSMUSG00000047881 ENSMUST00000127314 Rell1 protein_coding Interval_84788 chr19 16732107 16732383 + 0 NA intron (ENSMUSG00000046230.11, intron 19 of 73) protein_coding-intron (ENSMUSG00000046230.11, intron 19 of 71) 16446 ENSMUSG00000114931.1 ENSMUSG00000114931 ENSMUST00000223692 Gm32256 processed_pseudogene Interval_119040 chr4 135152080 135153814 + 0 NA promoter-TSS (ENSMUSG00000070691.10) protein_coding-promoter-TSS (ENSMUSG00000070691.10) 9 ENSMUSG00000070691.10 ENSMUSG00000070691 ENSMUST00000127109 Runx3 protein_coding Interval_87234 chr19 47096979 47097227 + 0 NA intron (ENSMUSG00000025047.9, intron 5 of 35) protein_coding-intron (ENSMUSG00000025047.9, intron 5 of 35) -6469 ENSMUSG00000071528.4 ENSMUSG00000071528 ENSMUST00000236170 Atp5md protein_coding Interval_86337 chr19 38857154 38857475 + 0 NA intron (ENSMUSG00000048720.8, intron 1 of 10) protein_coding-intron (ENSMUSG00000048720.8, intron 1 of 12) 20637 ENSMUSG00000048720.8 ENSMUSG00000048720 ENSMUST00000235558 Tbc1d12 protein_coding Interval_88844 chr2 11593340 11594221 + 0 NA intron (ENSMUSG00000037197.11, intron 5 of 11) protein_coding-intron (ENSMUSG00000037197.11, intron 5 of 11) -2922 ENSMUSG00000037197.11 ENSMUSG00000037197 ENSMUST00000156469 Rbm17 protein_coding Interval_77697 chr17 94402471 94402801 + 0 NA Intergenic Intergenic -73773 ENSMUSG00000077433.1 ENSMUSG00000077433 ENSMUST00000104245 Gm22593 snRNA Interval_93695 chr2 75945780 75946207 + 0 NA Intergenic Intergenic -7408 ENSMUSG00000075273.4 ENSMUSG00000075273 ENSMUST00000099996 Ttc30b protein_coding Interval_44982 chr13 51134436 51135284 + 0 NA intron (ENSMUSG00000021395.11, intron 1 of 3) protein_coding-intron (ENSMUSG00000021395.11, intron 3 of 5) 541 ENSMUSG00000021395.11 ENSMUSG00000021395 ENSMUST00000223152 Spin1 protein_coding Interval_95532 chr2 111679050 111679273 + 0 NA intron (ENSMUSG00000109389.1, intron 1 of 3) polymorphic_pseudogene-intron (ENSMUSG00000109389.1, intron 1 of 3) 11724 ENSMUSG00000109389.1 ENSMUSG00000109389 ENSMUST00000208175 Olfr1300-ps1 polymorphic_pseudogene Interval_22868 chr11 16915308 16916389 + 0 NA exon (ENSMUSG00000020122.16, exon 28 of 28) protein_coding-exon (ENSMUSG00000020122.16, exon 28 of 28) 35245 ENSMUSG00000087060.7 ENSMUSG00000087060 ENSMUST00000142777 Eldr processed_transcript Interval_155034 chr8 25835418 25835627 + 0 NA intron (ENSMUSG00000031575.18, intron 3 of 14) protein_coding-intron (ENSMUSG00000031575.18, intron 4 of 15) -1977 ENSMUSG00000031575.18 ENSMUSG00000031575 ENSMUST00000211188 Ash2l protein_coding Interval_99727 chr2 164530944 164532287 + 0 NA Intergenic Intergenic -18915 ENSMUSG00000086179.1 ENSMUSG00000086179 ENSMUST00000151754 Gm14317 lincRNA Interval_159858 chr8 104403776 104404767 + 0 NA Intergenic Intergenic -8464 ENSMUSG00000096188.1 ENSMUSG00000096188 ENSMUST00000179802 Cmtm4 protein_coding Interval_81408 chr18 60584473 60584702 + 0 NA intron (ENSMUSG00000049173.8, intron 2 of 6) protein_coding-intron (ENSMUSG00000049173.8, intron 2 of 6) 7201 ENSMUSG00000049173.8 ENSMUSG00000049173 ENSMUST00000056533 Myoz3 protein_coding Interval_55313 chr14 82370289 82370669 + 0 NA Intergenic Intergenic 14050 ENSMUSG00000089266.1 ENSMUSG00000089266 ENSMUST00000158641 Gm22891 snRNA Interval_163379 chr9 21164996 21166428 + 0 NA promoter-TSS (ENSMUSG00000032177.17) protein_coding-promoter-TSS (ENSMUSG00000032177.17) -18389 ENSMUSG00000032177.17 ENSMUSG00000032177 ENSMUST00000003395 Pde4a protein_coding Interval_1244 chr1 18030073 18030751 + 0 NA intron (ENSMUSG00000109887.1, intron 1 of 2) processed_transcript-intron (ENSMUSG00000109887.1, intron 2 of 3) 4590 ENSMUSG00000109887.1 ENSMUSG00000109887 ENSMUST00000191057 Gm28756 processed_transcript Interval_66943 chr16 38660146 38660373 + 0 NA intron (ENSMUSG00000022799.4, intron 1 of 1) protein_coding-intron (ENSMUSG00000022799.4, intron 1 of 11) 25610 ENSMUSG00000081651.1 ENSMUSG00000081651 ENSMUST00000122206 Gm15530 processed_pseudogene Interval_126909 chr5 97004558 97004896 + 0 NA intron (ENSMUSG00000034663.13, intron 1 of 13) protein_coding-intron (ENSMUSG00000034663.13, intron 1 of 15) 7038 ENSMUSG00000034663.13 ENSMUSG00000034663 ENSMUST00000035635 Bmp2k protein_coding Interval_84610 chr19 14416260 14416914 + 0 NA Intergenic Intergenic 178952 ENSMUSG00000024642.17 ENSMUSG00000024642 ENSMUST00000235975 Tle4 protein_coding Interval_52851 chr14 51088420 51091367 + 0 NA Intergenic Intergenic -1257 ENSMUSG00000072115.11 ENSMUSG00000072115 ENSMUST00000069011 Ang protein_coding Interval_5062 chr1 84746730 84747286 + 0 NA intron (ENSMUSG00000026219.14, intron 3 of 4) protein_coding-intron (ENSMUSG00000026219.14, intron 25 of 40) -18132 ENSMUSG00000026219.14 ENSMUSG00000026219 ENSMUST00000187818 Trip12 protein_coding Interval_163118 chr9 15397322 15398223 + 0 NA Intergenic Intergenic 16405 ENSMUSG00000111763.1 ENSMUSG00000111763 ENSMUST00000217087 Gm34973 lincRNA Interval_107389 chr3 107206016 107207003 + 0 NA Intergenic Intergenic 15223 ENSMUSG00000046213.9 ENSMUSG00000046213 ENSMUST00000029504 Cym protein_coding Interval_31217 chr11 98959516 98960773 + 0 NA promoter-TSS (ENSMUSG00000037992.16) protein_coding-promoter-TSS (ENSMUSG00000037992.16) 13700 ENSMUSG00000064491.1 ENSMUSG00000064491 ENSMUST00000082557 Gm22061 snRNA Interval_105290 chr3 84629211 84629617 + 0 NA intron (ENSMUSG00000102805.5, intron 3 of 9) protein_coding-intron (ENSMUSG00000102805.5, intron 3 of 9) 35840 ENSMUSG00000047819.3 ENSMUSG00000047819 ENSMUST00000062623 Tigd4 protein_coding Interval_2386 chr1 38873834 38874926 + 0 NA intron (ENSMUSG00000026080.13, intron 2 of 5) protein_coding-intron (ENSMUSG00000026080.13, intron 3 of 6) -10374 ENSMUSG00000103647.1 ENSMUSG00000103647 ENSMUST00000195309 Gm37707 antisense Interval_124396 chr5 45504817 45506265 + 0 NA TTS (ENSMUSG00000039682.12) protein_coding-TTS (ENSMUSG00000039682.12) 12015 ENSMUSG00000039682.12 ENSMUSG00000039682 ENSMUST00000146811 Lap3 protein_coding Interval_80905 chr18 50051442 50051990 + 0 NA promoter-TSS (ENSMUSG00000062210.13) protein_coding-promoter-TSS (ENSMUSG00000062210.13) 2128 ENSMUSG00000086600.8 ENSMUSG00000086600 ENSMUST00000147073 C030005K06Rik processed_transcript Interval_4383 chr1 73630846 73631498 + 0 NA intron (ENSMUSG00000100301.6, intron 2 of 3) lincRNA-intron (ENSMUSG00000100301.6, intron 7 of 8) 102235 ENSMUSG00000100429.1 ENSMUSG00000100429 ENSMUST00000189178 Gm29186 lincRNA Interval_170484 chr9 108272490 108272734 + 0 NA Intergenic Intergenic -8861 ENSMUSG00000039952.15 ENSMUSG00000039952 ENSMUST00000193701 Dag1 protein_coding Interval_149058 chr7 92759761 92760128 + 0 NA intron (ENSMUSG00000030643.14, intron 1 of 3) protein_coding-intron (ENSMUSG00000030643.14, intron 1 of 4) -17639 ENSMUSG00000030643.14 ENSMUSG00000030643 ENSMUST00000107179 Rab30 protein_coding Interval_8117 chr1 135811214 135811642 + 0 NA TTS (ENSMUSG00000026418.16) protein_coding-TTS (ENSMUSG00000026418.16) -18567 ENSMUSG00000041782.14 ENSMUSG00000041782 ENSMUST00000185756 Lad1 protein_coding Interval_62622 chr15 95723494 95724052 + 0 NA Intergenic Intergenic 8580 ENSMUSG00000116058.1 ENSMUSG00000116058 ENSMUST00000230585 Gm8843 processed_pseudogene Interval_10942 chr1 177382247 177383343 + 0 NA Intergenic Intergenic 46289 ENSMUSG00000097892.2 ENSMUSG00000097892 ENSMUST00000180591 Gm26801 antisense Interval_47761 chr13 92425705 92427326 + 0 NA promoter-TSS (ENSMUSG00000045034.12) protein_coding-promoter-TSS (ENSMUSG00000045034.12) -143 ENSMUSG00000045034.12 ENSMUSG00000045034 ENSMUST00000168871 Ankrd34b protein_coding Interval_149330 chr7 97480521 97481405 + 0 NA promoter-TSS (ENSMUSG00000025133.9) protein_coding-promoter-TSS (ENSMUSG00000025133.9) 29640 ENSMUSG00000051727.14 ENSMUSG00000051727 ENSMUST00000206279 Kctd14 protein_coding Interval_7976 chr1 134989616 134990055 + 0 NA intron (ENSMUSG00000042793.13, intron 12 of 12) protein_coding-intron (ENSMUSG00000042793.13, intron 17 of 17) 27217 ENSMUSG00000026429.9 ENSMUSG00000026429 ENSMUST00000139617 Ube2t protein_coding Interval_126920 chr5 97181266 97181720 + 0 NA Intergenic Intergenic -14093 ENSMUSG00000105850.1 ENSMUSG00000105850 ENSMUST00000199885 Gm2861 lincRNA Interval_100880 chr2 173083388 173084319 + 0 NA Intergenic Intergenic 35672 ENSMUSG00000070495.11 ENSMUSG00000070495 ENSMUST00000179693 Ctcfl protein_coding Interval_150877 chr7 116131999 116132733 + 0 NA intron (ENSMUSG00000045659.18, intron 22 of 24) protein_coding-intron (ENSMUSG00000045659.18, intron 22 of 24) -2841 ENSMUSG00000045659.18 ENSMUSG00000045659 ENSMUST00000205446 Plekha7 protein_coding Interval_88780 chr2 10603840 10604067 + 0 NA Intergenic Intergenic 85798 ENSMUSG00000080594.1 ENSMUSG00000080594 ENSMUST00000116944 Mir669h miRNA Interval_164833 chr9 42338271 42340139 + 0 NA intron (ENSMUSG00000037705.13, intron 17 of 23) protein_coding-intron (ENSMUSG00000037705.13, intron 17 of 23) -21524 ENSMUSG00000096114.1 ENSMUSG00000096114 ENSMUST00000179241 Gm26272 snoRNA Interval_106639 chr3 97997457 97998357 + 0 NA Intergenic Intergenic -15620 ENSMUSG00000027878.11 ENSMUSG00000027878 ENSMUST00000079812 Notch2 protein_coding Interval_138156 chr6 85573265 85574214 + 0 NA Intergenic Intergenic -13907 ENSMUSG00000063810.7 ENSMUSG00000063810 ENSMUST00000201221 Alms1 protein_coding Interval_130027 chr5 123765517 123765842 + 0 NA intron (ENSMUSG00000029414.11, intron 12 of 63) protein_coding-intron (ENSMUSG00000029414.11, intron 12 of 63) 15963 ENSMUSG00000029414.11 ENSMUSG00000029414 ENSMUST00000197002 Kntc1 protein_coding Interval_140474 chr6 118549262 118549452 + 0 NA promoter-TSS (ENSMUSG00000007827.10) protein_coding-promoter-TSS (ENSMUSG00000007827.10) -26122 ENSMUSG00000007827.10 ENSMUSG00000007827 ENSMUST00000188022 Ankrd26 protein_coding Interval_53389 chr14 56848024 56848806 + 0 NA Intergenic Intergenic 4401 ENSMUSG00000087941.2 ENSMUSG00000087941 ENSMUST00000157316 Gm27635 snRNA Interval_57884 chr15 24604246 24605428 + 0 NA TTS (ENSMUSG00000115004.1) processed_pseudogene-TTS (ENSMUSG00000115004.1) 641 ENSMUSG00000115004.1 ENSMUSG00000115004 ENSMUST00000226982 Gm48920 processed_pseudogene Interval_93420 chr2 72953944 72954663 + 0 NA intron (ENSMUSG00000027109.16, intron 1 of 1) protein_coding-intron (ENSMUSG00000027109.16, intron 3 of 5) -1595 ENSMUSG00000084213.1 ENSMUSG00000084213 ENSMUST00000118080 Hspe1-ps5 processed_pseudogene Interval_49807 chr13 116075726 116075916 + 0 NA Intergenic Intergenic -20214 ENSMUSG00000114956.1 ENSMUSG00000114956 ENSMUST00000224590 Gm47893 processed_pseudogene Interval_153267 chr7 143061922 143063286 + 0 NA exon (ENSMUSG00000037706.17, exon 2 of 8) protein_coding-exon (ENSMUSG00000037706.17, exon 2 of 8) -2070 ENSMUSG00000037706.17 ENSMUSG00000037706 ENSMUST00000132303 Cd81 protein_coding Interval_140113 chr6 114343553 114344184 + 0 NA Intergenic Intergenic -59798 ENSMUSG00000053004.9 ENSMUSG00000053004 ENSMUST00000160780 Hrh1 protein_coding Interval_72916 chr17 33428224 33428501 + 0 NA Intergenic Intergenic -4534 ENSMUSG00000092519.2 ENSMUSG00000092519 ENSMUST00000174088 Actl9 protein_coding Interval_52940 chr14 52156357 52158377 + 0 NA intron (ENSMUSG00000057132.16, intron 20 of 21) protein_coding-intron (ENSMUSG00000057132.16, intron 22 of 24) 5763 ENSMUSG00000035726.8 ENSMUSG00000035726 ENSMUST00000227577 Supt16 protein_coding Interval_147308 chr7 65727232 65727951 + 0 NA Intergenic Intergenic 34115 ENSMUSG00000078681.10 ENSMUSG00000078681 ENSMUST00000206361 Tm2d3 protein_coding Interval_90081 chr2 27771620 27772635 + 0 NA Intergenic Intergenic 46908 ENSMUSG00000015846.15 ENSMUSG00000015846 ENSMUST00000148756 Rxra protein_coding Interval_174506 chrX 153831925 153832800 + 0 NA promoter-TSS (ENSMUSG00000046550.8) protein_coding-promoter-TSS (ENSMUSG00000046550.8) 137 ENSMUSG00000046550.8 ENSMUSG00000046550 ENSMUST00000049999 Spin2c protein_coding Interval_92416 chr2 59622443 59622955 + 0 NA intron (ENSMUSG00000035168.16, intron 1 of 1) protein_coding-intron (ENSMUSG00000035168.16, intron 1 of 26) -58015 ENSMUSG00000081157.1 ENSMUSG00000081157 ENSMUST00000118837 Gm13552 processed_pseudogene Interval_48228 chr13 97305071 97306688 + 0 NA Intergenic Intergenic 22696 ENSMUSG00000097932.2 ENSMUSG00000097932 ENSMUST00000181148 C430039J16Rik lincRNA Interval_120026 chr4 141425363 141426516 + 0 NA TTS (ENSMUSG00000006221.7) protein_coding-TTS (ENSMUSG00000006221.7) 5160 ENSMUSG00000006221.7 ENSMUSG00000006221 ENSMUST00000102486 Hspb7 protein_coding Interval_157683 chr8 72277801 72279499 + 0 NA Intergenic Intergenic 5504 ENSMUSG00000110443.1 ENSMUSG00000110443 ENSMUST00000212069 Gm39197 processed_pseudogene Interval_12303 chr1 191534757 191535485 + 0 NA TTS (ENSMUSG00000102246.1) TEC-TTS (ENSMUSG00000102246.1) 1771 ENSMUSG00000102246.1 ENSMUSG00000102246 ENSMUST00000192556 9430037O13Rik TEC Interval_141047 chr6 124669916 124670582 + 0 NA intron (ENSMUSG00000004270.13, intron 1 of 2) protein_coding-intron (ENSMUSG00000004270.13, intron 1 of 12) -32008 ENSMUSG00000004270.13 ENSMUSG00000004270 ENSMUST00000150597 Lpcat3 protein_coding Interval_122992 chr5 28231759 28232407 + 0 NA intron (ENSMUSG00000044681.19, intron 1 of 3) protein_coding-intron (ENSMUSG00000044681.19, intron 1 of 2) 13723 ENSMUSG00000044681.19 ENSMUSG00000044681 ENSMUST00000141196 Cnpy1 protein_coding Interval_143687 chr7 14539823 14540524 + 0 NA intron (ENSMUSG00000041596.12, intron 12 of 12) transcribed_unprocessed_pseudogene-intron (ENSMUSG00000041596.12, intron 12 of 12) -8541 ENSMUSG00000099242.1 ENSMUSG00000099242 ENSMUST00000183474 Obox4-ps3 unprocessed_pseudogene Interval_70958 chr17 16831748 16832150 + 0 NA Intergenic Intergenic -15446 ENSMUSG00000116958.1 ENSMUSG00000116958 ENSMUST00000231260 Gm6705 processed_pseudogene Interval_152327 chr7 131818989 131819628 + 0 NA intron (ENSMUSG00000030849.18, intron 2 of 6) protein_coding-intron (ENSMUSG00000030849.18, intron 2 of 6) -4705 ENSMUSG00000109014.1 ENSMUSG00000109014 ENSMUST00000208353 Gm44546 lincRNA Interval_100869 chr2 173019535 173020521 + 0 NA promoter-TSS (ENSMUSG00000027510.17) protein_coding-promoter-TSS (ENSMUSG00000027510.17) -2410 ENSMUSG00000027510.17 ENSMUSG00000027510 ENSMUST00000130430 Rbm38 protein_coding Interval_132042 chr5 142450877 142452717 + 0 NA intron (ENSMUSG00000056493.9, intron 5 of 8) protein_coding-intron (ENSMUSG00000056493.9, intron 5 of 8) -12147 ENSMUSG00000039623.13 ENSMUSG00000039623 ENSMUST00000197293 Ap5z1 protein_coding Interval_98144 chr2 148731750 148732807 + 0 NA exon (ENSMUSG00000027438.14, exon 1 of 11) protein_coding-exon (ENSMUSG00000027438.14, exon 1 of 11) 113 ENSMUSG00000027438.14 ENSMUSG00000027438 ENSMUST00000140647 Napb protein_coding Interval_70009 chr17 4347860 4348891 + 0 NA Intergenic Intergenic -226273 ENSMUSG00000116615.1 ENSMUSG00000116615 ENSMUST00000231319 4930548J01Rik processed_transcript Interval_145779 chr7 38230203 38230531 + 0 NA Intergenic Intergenic -2351 ENSMUSG00000074170.5 ENSMUSG00000074170 ENSMUST00000098513 Plekhf1 protein_coding Interval_121992 chr5 13125251 13125924 + 0 NA promoter-TSS (ENSMUSG00000028883.17) protein_coding-promoter-TSS (ENSMUSG00000028883.17) -3821 ENSMUSG00000062038.5 ENSMUSG00000062038 ENSMUST00000078246 Gm10108 processed_pseudogene Interval_108608 chr3 129543850 129546211 + 0 NA intron (ENSMUSG00000041220.10, intron 1 of 3) protein_coding-intron (ENSMUSG00000041220.10, intron 2 of 4) 6889 ENSMUSG00000106092.1 ENSMUSG00000106092 ENSMUST00000200283 Gm43072 TEC Interval_128368 chr5 112848437 112849341 + 0 NA intron (ENSMUSG00000072720.9, intron 7 of 16) protein_coding-intron (ENSMUSG00000072720.9, intron 12 of 43) 23607 ENSMUSG00000072720.9 ENSMUSG00000072720 ENSMUST00000183273 Myo18b protein_coding Interval_5281 chr1 87217956 87218405 + 0 NA intron (ENSMUSG00000026254.17, intron 2 of 5) protein_coding-intron (ENSMUSG00000026254.17, intron 1 of 6) 4201 ENSMUSG00000026254.17 ENSMUSG00000026254 ENSMUST00000113231 Eif4e2 protein_coding Interval_59669 chr15 57761022 57762880 + 0 NA intron (ENSMUSG00000071757.10, intron 1 of 2) protein_coding-intron (ENSMUSG00000071757.10, intron 1 of 3) -23285 ENSMUSG00000047807.10 ENSMUSG00000047807 ENSMUST00000176703 9330154K18Rik antisense Interval_100585 chr2 170273527 170274175 + 0 NA Intergenic Intergenic -11184 ENSMUSG00000084013.1 ENSMUSG00000084013 ENSMUST00000118388 Gm14270 processed_pseudogene Interval_93831 chr2 77303241 77304244 + 0 NA Intergenic Intergenic -11009 ENSMUSG00000085277.1 ENSMUSG00000085277 ENSMUST00000144043 Gm13943 lincRNA Interval_140489 chr6 118775738 118776089 + 0 NA intron (ENSMUSG00000051331.16, intron 2 of 44) protein_coding-intron (ENSMUSG00000051331.16, intron 5 of 46) -58987 ENSMUSG00000089115.1 ENSMUSG00000089115 ENSMUST00000158490 Gm25905 snRNA Interval_11493 chr1 182190964 182191803 + 0 NA Intergenic Intergenic -26897 ENSMUSG00000091013.3 ENSMUSG00000091013 ENSMUST00000169123 Vmn1r1 protein_coding Interval_49996 chr13 119434767 119434996 + 0 NA intron (ENSMUSG00000025451.15, intron 2 of 5) protein_coding-intron (ENSMUSG00000025451.15, intron 2 of 10) 5723 ENSMUSG00000025451.15 ENSMUSG00000025451 ENSMUST00000173339 Paip1 protein_coding Interval_140453 chr6 118323948 118324274 + 0 NA Intergenic Intergenic -15727 ENSMUSG00000107933.1 ENSMUSG00000107933 ENSMUST00000204033 Gm30498 lincRNA Interval_76204 chr17 77123025 77123244 + 0 NA Intergenic Intergenic 186494 ENSMUSG00000117388.1 ENSMUSG00000117388 ENSMUST00000235006 Gm6496 processed_pseudogene Interval_28533 chr11 76561335 76563080 + 0 NA intron (ENSMUSG00000017631.19, intron 1 of 22) protein_coding-intron (ENSMUSG00000017631.19, intron 1 of 22) -39112 ENSMUSG00000024205.7 ENSMUSG00000024205 ENSMUST00000136893 Rpl36-ps2 processed_pseudogene Interval_143175 chr7 4163504 4165278 + 0 NA promoter-TSS (ENSMUSG00000063838.6) protein_coding-promoter-TSS (ENSMUSG00000063838.6) 148 ENSMUSG00000063838.6 ENSMUSG00000063838 ENSMUST00000140410 Cdc42ep5 protein_coding Interval_80252 chr18 38559758 38560185 + 0 NA Intergenic Intergenic -22879 ENSMUSG00000118296.1 ENSMUSG00000118296 ENSMUST00000236625 Gm19100 processed_pseudogene Interval_170611 chr9 109520507 109520734 + 0 NA intron (ENSMUSG00000104572.5, intron 6 of 7) transcribed_unprocessed_pseudogene-intron (ENSMUSG00000104572.5, intron 6 of 7) 13424 ENSMUSG00000104572.5 ENSMUSG00000104572 ENSMUST00000198015 Fbxw23 transcribed_unprocessed_pseudogene Interval_134034 chr6 17878431 17878830 + 0 NA intron (ENSMUSG00000029534.17, intron 6 of 7) protein_coding-intron (ENSMUSG00000029534.17, intron 8 of 14) -27077 ENSMUSG00000098570.1 ENSMUSG00000098570 ENSMUST00000184157 Gm27444 misc_RNA Interval_146721 chr7 49700758 49701902 + 0 NA Intergenic Intergenic -57785 ENSMUSG00000039745.8 ENSMUSG00000039745 ENSMUST00000207895 Htatip2 protein_coding Interval_87337 chr19 47803620 47805336 + 0 NA intron (ENSMUSG00000044948.17, intron 1 of 4) protein_coding-intron (ENSMUSG00000044948.17, intron 8 of 13) -40898 ENSMUSG00000044948.17 ENSMUSG00000044948 ENSMUST00000159204 Cfap43 protein_coding Interval_120866 chr4 151156814 151157413 + 0 NA intron (ENSMUSG00000014592.21, intron 7 of 24) protein_coding-intron (ENSMUSG00000014592.21, intron 7 of 23) 67543 ENSMUSG00000078491.2 ENSMUSG00000078491 ENSMUST00000105667 Gm13090 protein_coding Interval_151306 chr7 120860665 120861733 + 0 NA intron (ENSMUSG00000035064.17, intron 2 of 5) protein_coding-intron (ENSMUSG00000035064.17, intron 2 of 17) 14099 ENSMUSG00000085118.2 ENSMUSG00000085118 ENSMUST00000141810 Gm15774 antisense Interval_36281 chr12 40599659 40600329 + 0 NA intron (ENSMUSG00000035954.10, intron 1 of 5) protein_coding-intron (ENSMUSG00000035954.10, intron 1 of 52) 153911 ENSMUSG00000035954.10 ENSMUSG00000035954 ENSMUST00000220850 Dock4 protein_coding Interval_75235 chr17 65027924 65029111 + 0 NA Intergenic Intergenic -83665 ENSMUSG00000077691.1 ENSMUSG00000077691 ENSMUST00000104503 Gm25344 snoRNA Interval_44926 chr13 50064584 50064961 + 0 NA Intergenic Intergenic -6387 ENSMUSG00000113888.1 ENSMUSG00000113888 ENSMUST00000223408 LOC667541 processed_pseudogene Interval_77145 chr17 86900386 86900682 + 0 NA Intergenic Intergenic -17875 ENSMUSG00000037689.6 ENSMUSG00000037689 ENSMUST00000202221 Tmem247 protein_coding Interval_27116 chr11 63028879 63029848 + 0 NA Intergenic Intergenic -25235 ENSMUSG00000087604.7 ENSMUSG00000087604 ENSMUST00000130177 Cdrt4os1 antisense Interval_124044 chr5 37792131 37792364 + 0 NA Intergenic Intergenic -15059 ENSMUSG00000107131.1 ENSMUSG00000107131 ENSMUST00000201761 Gm43763 lincRNA Interval_80360 chr18 40029067 40029320 + 0 NA Intergenic Intergenic 80540 ENSMUSG00000118042.1 ENSMUSG00000118042 ENSMUST00000235427 Gm50395 lincRNA Interval_114840 chr4 86118541 86119653 + 0 NA intron (ENSMUSG00000066113.16, intron 3 of 8) protein_coding-intron (ENSMUSG00000066113.16, intron 3 of 12) -75603 ENSMUSG00000064687.1 ENSMUSG00000064687 ENSMUST00000082753 Gm25811 snRNA Interval_130349 chr5 126435753 126436688 + 0 NA Intergenic Intergenic -12238 ENSMUSG00000104175.1 ENSMUSG00000104175 ENSMUST00000192617 Gm37700 TEC Interval_44857 chr13 49146482 49148324 + 0 NA promoter-TSS (ENSMUSG00000037989.15) protein_coding-promoter-TSS (ENSMUSG00000037989.15) 609 ENSMUSG00000037989.15 ENSMUSG00000037989 ENSMUST00000159633 Wnk2 protein_coding Interval_101858 chr3 10204929 10205154 + 0 NA exon (ENSMUSG00000062515.3, exon 1 of 1) protein_coding-exon (ENSMUSG00000062515.3, exon 1 of 1) 3517 ENSMUSG00000062515.3 ENSMUSG00000062515 ENSMUST00000191757 Fabp4 protein_coding Interval_77349 chr17 88122650 88122866 + 0 NA Intergenic Intergenic -2754 ENSMUSG00000058869.9 ENSMUSG00000058869 ENSMUST00000182679 Gm4832 transcribed_processed_pseudogene Interval_104425 chr3 65535403 65535653 + 0 NA intron (ENSMUSG00000034640.9, intron 2 of 3) protein_coding-intron (ENSMUSG00000034640.9, intron 2 of 5) 9827 ENSMUSG00000087825.1 ENSMUSG00000087825 ENSMUST00000157200 Gm22279 snRNA Interval_31355 chr11 100228909 100229178 + 0 NA intron (ENSMUSG00000084257.1, intron 6 of 6) unprocessed_pseudogene-intron (ENSMUSG00000084257.1, intron 6 of 6) 3035 ENSMUSG00000084257.1 ENSMUSG00000084257 ENSMUST00000121423 Gm11597 unprocessed_pseudogene Interval_70876 chr17 15526560 15527614 + 0 NA promoter-TSS (ENSMUSG00000014771.13) protein_coding-promoter-TSS (ENSMUSG00000014771.13) 26 ENSMUSG00000014771.13 ENSMUSG00000014771 ENSMUST00000137233 Pdcd2 protein_coding Interval_113210 chr4 50036285 50036541 + 0 NA Intergenic Intergenic 14990 ENSMUSG00000081120.1 ENSMUSG00000081120 ENSMUST00000119387 Gm12458 processed_pseudogene Interval_169414 chr9 97068166 97069448 + 0 NA Intergenic Intergenic -1500 ENSMUSG00000101365.1 ENSMUSG00000101365 ENSMUST00000186238 Gm19325 lincRNA Interval_159375 chr8 94161860 94162988 + 0 NA Intergenic Intergenic 9678 ENSMUSG00000031760.9 ENSMUSG00000031760 ENSMUST00000211915 Mt3 protein_coding Interval_25163 chr11 44664983 44666162 + 0 NA intron (ENSMUSG00000057098.14, intron 6 of 15) protein_coding-intron (ENSMUSG00000057098.14, intron 6 of 15) -2896 ENSMUSG00000085784.1 ENSMUSG00000085784 ENSMUST00000130493 Gm12158 antisense Interval_47049 chr13 74787205 74789227 + 0 NA intron (ENSMUSG00000021585.10, intron 2 of 20) protein_coding-intron (ENSMUSG00000021585.10, intron 2 of 30) -19355 ENSMUSG00000113015.1 ENSMUSG00000113015 ENSMUST00000222599 Gm6296 processed_pseudogene Interval_150580 chr7 112620283 112620874 + 0 NA intron (ENSMUSG00000085945.3, intron 2 of 3) bidirectional_promoter_lncRNA-intron (ENSMUSG00000085945.3, intron 2 of 3) -2353 ENSMUSG00000093002.1 ENSMUSG00000093002 ENSMUST00000175261 Gm24154 snoRNA Interval_135376 chr6 38703744 38704376 + 0 NA intron (ENSMUSG00000061436.15, intron 12 of 14) protein_coding-intron (ENSMUSG00000061436.15, intron 12 of 14) 40181 ENSMUSG00000079598.4 ENSMUSG00000079598 ENSMUST00000238216 Clec2l protein_coding Interval_119090 chr4 135494121 135496056 + 0 NA promoter-TSS (ENSMUSG00000028801.14) protein_coding-promoter-TSS (ENSMUSG00000028801.14) 298 ENSMUSG00000028801.14 ENSMUSG00000028801 ENSMUST00000063707 Stpg1 protein_coding Interval_40451 chr12 104954059 104954408 + 0 NA exon (ENSMUSG00000054150.12, exon 9 of 17) protein_coding-exon (ENSMUSG00000054150.12, exon 9 of 17) -27544 ENSMUSG00000100975.2 ENSMUSG00000100975 ENSMUST00000185486 Gm28875 lincRNA Interval_97941 chr2 145957143 145957946 + 0 NA intron (ENSMUSG00000037143.17, intron 4 of 4) protein_coding-intron (ENSMUSG00000037143.17, intron 6 of 6) -22830 ENSMUSG00000001767.5 ENSMUSG00000001767 ENSMUST00000147904 Crnkl1 protein_coding Interval_155409 chr8 33363533 33364034 + 0 NA intron (ENSMUSG00000031583.13, intron 1 of 8) protein_coding-intron (ENSMUSG00000031583.13, intron 1 of 33) -22542 ENSMUSG00000049184.6 ENSMUSG00000049184 ENSMUST00000078058 Purg protein_coding Interval_30954 chr11 97404173 97405204 + 0 NA Intergenic Intergenic -31597 ENSMUSG00000049807.16 ENSMUSG00000049807 ENSMUST00000093940 Arhgap23 protein_coding Interval_156733 chr8 57710987 57711453 + 0 NA intron (ENSMUSG00000110162.1, intron 2 of 2) lincRNA-intron (ENSMUSG00000110162.1, intron 2 of 2) 11446 ENSMUSG00000110162.1 ENSMUSG00000110162 ENSMUST00000209274 Gm45356 lincRNA Interval_86991 chr19 45385041 45385539 + 0 NA intron (ENSMUSG00000025217.15, intron 1 of 2) protein_coding-intron (ENSMUSG00000025217.15, intron 1 of 14) 21533 ENSMUSG00000025217.15 ENSMUSG00000025217 ENSMUST00000224478 Btrc protein_coding Interval_93196 chr2 71091291 71091506 + 0 NA exon (ENSMUSG00000041966.18, exon 14 of 14) protein_coding-exon (ENSMUSG00000041966.18, exon 14 of 14) -26525 ENSMUSG00000027015.4 ENSMUSG00000027015 ENSMUST00000028403 Cybrd1 protein_coding Interval_109189 chr3 137784341 137786041 + 0 NA Intergenic Intergenic -1576 ENSMUSG00000099011.1 ENSMUSG00000099011 ENSMUST00000184334 Mir6380 miRNA Interval_64725 chr16 14476906 14477111 + 0 NA Intergenic Intergenic 6738 ENSMUSG00000116439.1 ENSMUSG00000116439 ENSMUST00000231182 Gm49528 unprocessed_pseudogene Interval_139602 chr6 102524100 102524336 + 0 NA intron (ENSMUSG00000030075.10, intron 1 of 22) protein_coding-intron (ENSMUSG00000030075.10, intron 1 of 22) 136678 ENSMUSG00000107533.1 ENSMUSG00000107533 ENSMUST00000204142 Gm44422 processed_pseudogene Interval_6594 chr1 117945810 117946564 + 0 NA intron (ENSMUSG00000101415.1, intron 3 of 3) protein_coding-intron (ENSMUSG00000101415.1, intron 3 of 3) 18172 ENSMUSG00000101415.1 ENSMUSG00000101415 ENSMUST00000191265 Gm28168 protein_coding Interval_116147 chr4 108127129 108127690 + 0 NA intron (ENSMUSG00000028603.15, intron 1 of 4) protein_coding-intron (ENSMUSG00000028603.15, intron 1 of 4) -8905 ENSMUSG00000028603.15 ENSMUSG00000028603 ENSMUST00000130776 Scp2 protein_coding Interval_149904 chr7 102470058 102471994 + 0 NA Intergenic Intergenic 10653 ENSMUSG00000044814.6 ENSMUSG00000044814 ENSMUST00000061482 Olfr543 protein_coding Interval_172223 chrX 10524833 10525254 + 0 NA intron (ENSMUSG00000058254.12, intron 1 of 6) protein_coding-intron (ENSMUSG00000058254.12, intron 1 of 7) 14995 ENSMUSG00000088404.1 ENSMUSG00000088404 ENSMUST00000157779 Gm25885 rRNA Interval_41951 chr13 5301668 5302505 + 0 NA Intergenic Intergenic -85908 ENSMUSG00000113668.1 ENSMUSG00000113668 ENSMUST00000223476 Gm47451 unprocessed_pseudogene Interval_6365 chr1 106395287 106396030 + 0 NA Intergenic Intergenic 6329 ENSMUSG00000100247.1 ENSMUSG00000100247 ENSMUST00000187918 A530053M12Rik lincRNA Interval_82992 chr18 80214518 80216381 + 0 NA promoter-TSS (ENSMUSG00000057130.12) protein_coding-promoter-TSS (ENSMUSG00000057130.12) 8654 ENSMUSG00000057130.12 ENSMUSG00000057130 ENSMUST00000130675 Txnl4a protein_coding Interval_81831 chr18 65083131 65084556 + 0 NA exon (ENSMUSG00000024589.18, exon 1 of 2) protein_coding-exon (ENSMUSG00000024589.18, exon 1 of 2) 789 ENSMUSG00000024589.18 ENSMUSG00000024589 ENSMUST00000236100 Nedd4l protein_coding Interval_116042 chr4 107180351 107181028 + 0 NA intron (ENSMUSG00000028618.11, intron 1 of 7) protein_coding-intron (ENSMUSG00000028618.11, intron 1 of 7) 1963 ENSMUSG00000028618.11 ENSMUSG00000028618 ENSMUST00000127652 Tmem59 protein_coding Interval_45057 chr13 51771573 51772216 + 0 NA intron (ENSMUSG00000021451.16, intron 1 of 16) protein_coding-intron (ENSMUSG00000021451.16, intron 1 of 15) 6600 ENSMUSG00000092648.1 ENSMUSG00000092648 ENSMUST00000174907 Gm23566 miRNA Interval_125117 chr5 64632046 64632372 + 0 NA Intergenic Intergenic -3631 ENSMUSG00000104928.1 ENSMUSG00000104928 ENSMUST00000197839 Gm42565 lincRNA Interval_97310 chr2 133579413 133580761 + 0 NA Intergenic Intergenic 4334 ENSMUSG00000064983.1 ENSMUSG00000064983 ENSMUST00000083049 Gm25258 snRNA Interval_37198 chr12 59498319 59498826 + 0 NA Intergenic Intergenic -142963 ENSMUSG00000111978.1 ENSMUSG00000111978 ENSMUST00000219779 Gm48268 processed_pseudogene Interval_96830 chr2 128667909 128668407 + 0 NA intron (ENSMUSG00000014355.10, intron 14 of 27) protein_coding-intron (ENSMUSG00000014355.10, intron 14 of 47) -39519 ENSMUSG00000014355.10 ENSMUSG00000014355 ENSMUST00000110332 Anapc1 protein_coding Interval_63067 chr15 98928532 98929318 + 0 NA Intergenic Intergenic 5513 ENSMUSG00000023004.8 ENSMUSG00000023004 ENSMUST00000140969 Tuba1b protein_coding Interval_144291 chr7 24327329 24327539 + 0 NA exon (ENSMUSG00000118562.1, exon 1 of 1) processed_pseudogene-exon (ENSMUSG00000118562.1, exon 1 of 1) 359 ENSMUSG00000118562.1 ENSMUSG00000118562 ENSMUST00000238952 AC159140.1 processed_pseudogene Interval_39714 chr12 94630244 94630465 + 0 NA Intergenic Intergenic -127221 ENSMUSG00000113414.1 ENSMUSG00000113414 ENSMUST00000220917 Gm18504 processed_pseudogene Interval_158934 chr8 88090168 88090828 + 0 NA Intergenic Intergenic -19288 ENSMUSG00000118626.1 ENSMUSG00000118626 ENSMUST00000239289 AC127285.1 processed_pseudogene Interval_172358 chrX 13431197 13431813 + 0 NA Intergenic Intergenic -34605 ENSMUSG00000051228.5 ENSMUSG00000051228 ENSMUST00000050434 Nyx protein_coding Interval_29252 chr11 82296454 82296663 + 0 NA intron (ENSMUSG00000020702.13, intron 2 of 10) protein_coding-intron (ENSMUSG00000020702.13, intron 2 of 10) 9132 ENSMUSG00000020702.13 ENSMUSG00000020702 ENSMUST00000021043 Ccl1 protein_coding Interval_147203 chr7 64424574 64425345 + 0 NA Intergenic Intergenic 32219 ENSMUSG00000033429.10 ENSMUSG00000033429 ENSMUST00000206194 Mcee protein_coding Interval_41358 chr12 113051665 113052469 + 0 NA intron (ENSMUSG00000021143.10, intron 7 of 23) protein_coding-intron (ENSMUSG00000021143.10, intron 7 of 23) 11371 ENSMUSG00000104729.1 ENSMUSG00000104729 ENSMUST00000197963 Gm44471 miRNA Interval_18179 chr10 83337121 83338097 + 0 NA promoter-TSS (ENSMUSG00000034591.5) protein_coding-promoter-TSS (ENSMUSG00000034591.5) 4885 ENSMUSG00000112577.1 ENSMUSG00000112577 ENSMUST00000218560 Gm47170 processed_pseudogene Interval_157207 chr8 67875924 67877171 + 0 NA intron (ENSMUSG00000030465.19, intron 3 of 5) protein_coding-intron (ENSMUSG00000030465.19, intron 8 of 14) -80222 ENSMUSG00000087266.2 ENSMUSG00000087266 ENSMUST00000127631 Gm15991 antisense Interval_131108 chr5 135186565 135187959 + 0 NA promoter-TSS (ENSMUSG00000002748.7) protein_coding-promoter-TSS (ENSMUSG00000002748.7) -10870 ENSMUSG00000002748.7 ENSMUSG00000002748 ENSMUST00000136947 Baz1b protein_coding Interval_128791 chr5 115275908 115276667 + 0 NA Intergenic Intergenic -3408 ENSMUSG00000041733.10 ENSMUSG00000041733 ENSMUST00000129024 Coq5 protein_coding Interval_33838 chr11 118906584 118907153 + 0 NA intron (ENSMUSG00000025576.17, intron 1 of 13) protein_coding-intron (ENSMUSG00000025576.17, intron 1 of 14) -39648 ENSMUSG00000084887.1 ENSMUSG00000084887 ENSMUST00000127327 Gm11749 sense_intronic Interval_66541 chr16 34994656 34994997 + 0 NA promoter-TSS (ENSMUSG00000022836.11) protein_coding-promoter-TSS (ENSMUSG00000022836.11) 28074 ENSMUSG00000116840.1 ENSMUSG00000116840 ENSMUST00000232358 Gm21691 antisense Interval_75679 chr17 70595493 70595833 + 0 NA TTS (ENSMUSG00000003279.17) protein_coding-TTS (ENSMUSG00000003279.17) 159919 ENSMUSG00000097282.1 ENSMUSG00000097282 ENSMUST00000181546 5031415H12Rik antisense Interval_88659 chr2 9085955 9086177 + 0 NA Intergenic Intergenic -43582 ENSMUSG00000082953.3 ENSMUSG00000082953 ENSMUST00000120466 Gm13217 unprocessed_pseudogene Interval_43560 chr13 33327899 33328129 + 0 NA intron (ENSMUSG00000038327.8, intron 4 of 6) protein_coding-intron (ENSMUSG00000038327.8, intron 4 of 6) 3937 ENSMUSG00000038327.8 ENSMUSG00000038327 ENSMUST00000075515 Serpinb9f protein_coding Interval_87248 chr19 47172991 47173490 + 0 NA Intergenic Intergenic -2106 ENSMUSG00000091230.1 ENSMUSG00000091230 ENSMUST00000169692 H1f11-ps processed_pseudogene Interval_163971 chr9 30012061 30013780 + 0 NA Intergenic Intergenic 50799 ENSMUSG00000111175.1 ENSMUSG00000111175 ENSMUST00000214849 Gm19640 processed_pseudogene Interval_134359 chr6 26511006 26511314 + 0 NA Intergenic Intergenic -50730 ENSMUSG00000088387.1 ENSMUSG00000088387 ENSMUST00000157762 Gm24691 snRNA Interval_14452 chr10 33956062 33956339 + 0 NA Intergenic Intergenic -13783 ENSMUSG00000111993.1 ENSMUSG00000111993 ENSMUST00000219391 Gm48018 transcribed_unprocessed_pseudogene Interval_25327 chr11 46409922 46410756 + 0 NA Intergenic Intergenic 13780 ENSMUSG00000020401.6 ENSMUSG00000020401 ENSMUST00000063166 Fam71b protein_coding Interval_4891 chr1 81609523 81609914 + 0 NA Intergenic Intergenic -52235 ENSMUSG00000101986.1 ENSMUSG00000101986 ENSMUST00000191337 Gm6198 processed_pseudogene Interval_68387 chr16 75447056 75447792 + 0 NA promoter-TSS (ENSMUSG00000116610.1) lincRNA-promoter-TSS (ENSMUSG00000116610.1) -131 ENSMUSG00000116610.1 ENSMUSG00000116610 ENSMUST00000232503 Gm49678 lincRNA Interval_151598 chr7 124726866 124727892 + 0 NA Intergenic Intergenic -18444 ENSMUSG00000086254.1 ENSMUSG00000086254 ENSMUST00000130240 3100003L05Rik lincRNA Interval_15425 chr10 46097199 46098274 + 0 NA Intergenic Intergenic -203081 ENSMUSG00000111182.1 ENSMUSG00000111182 ENSMUST00000217441 Gm35430 lincRNA Interval_25877 chr11 52299849 52300072 + 0 NA Intergenic Intergenic 23905 ENSMUSG00000086395.1 ENSMUSG00000086395 ENSMUST00000150973 A630014C17Rik antisense Interval_74456 chr17 50782922 50784290 + 0 NA intron (ENSMUSG00000023923.10, intron 17 of 21) protein_coding-intron (ENSMUSG00000023923.10, intron 17 of 21) 84918 ENSMUSG00000044645.8 ENSMUSG00000044645 ENSMUST00000061681 Gm7334 processed_pseudogene Interval_167448 chr9 69436934 69437266 + 0 NA exon (ENSMUSG00000111621.1, exon 1 of 1) processed_pseudogene-exon (ENSMUSG00000111621.1, exon 1 of 1) 147 ENSMUSG00000111621.1 ENSMUSG00000111621 ENSMUST00000216464 Gm7802 processed_pseudogene Interval_10096 chr1 165768931 165769125 + 0 NA promoter-TSS (ENSMUSG00000040713.12) protein_coding-promoter-TSS (ENSMUSG00000040713.12) 5282 ENSMUSG00000040713.12 ENSMUSG00000040713 ENSMUST00000040298 Creg1 protein_coding Interval_51818 chr14 32472991 32473833 + 0 NA intron (ENSMUSG00000097794.2, intron 1 of 1) antisense-intron (ENSMUSG00000097794.2, intron 1 of 1) -7455 ENSMUSG00000021919.8 ENSMUSG00000021919 ENSMUST00000228511 Chat protein_coding Interval_13963 chr10 25118023 25119400 + 0 NA Intergenic Intergenic 64571 ENSMUSG00000093282.1 ENSMUSG00000093282 ENSMUST00000175541 Gm22566 miRNA Interval_57310 chr15 8667708 8668585 + 0 NA intron (ENSMUSG00000005360.14, intron 3 of 9) protein_coding-intron (ENSMUSG00000005360.14, intron 3 of 9) -13073 ENSMUSG00000103047.1 ENSMUSG00000103047 ENSMUST00000195237 Gm37310 TEC Interval_117017 chr4 119033139 119034228 + 0 NA Intergenic Intergenic -33198 ENSMUSG00000087464.1 ENSMUSG00000087464 ENSMUST00000150754 Gm12862 lincRNA Interval_100488 chr2 169524015 169525006 + 0 NA Intergenic Intergenic 43893 ENSMUSG00000087074.1 ENSMUSG00000087074 ENSMUST00000156239 Gm14249 lincRNA Interval_47107 chr13 75822487 75822905 + 0 NA Intergenic Intergenic -17205 ENSMUSG00000021591.8 ENSMUSG00000021591 ENSMUST00000222530 Glrx protein_coding Interval_62049 chr15 86101283 86101586 + 0 NA intron (ENSMUSG00000035900.18, intron 3 of 18) protein_coding-intron (ENSMUSG00000035900.18, intron 3 of 18) -11374 ENSMUSG00000089680.1 ENSMUSG00000089680 ENSMUST00000159271 Gm15722 antisense Interval_169488 chr9 98317761 98319198 + 0 NA intron (ENSMUSG00000032456.13, intron 1 of 3) protein_coding-intron (ENSMUSG00000032456.13, intron 1 of 4) 16829 ENSMUSG00000101452.1 ENSMUSG00000101452 ENSMUST00000190473 Gm28530 processed_pseudogene Interval_71320 chr17 22196813 22197009 + 0 NA TTS (ENSMUSG00000096433.2) protein_coding-TTS (ENSMUSG00000096433.2) -10803 ENSMUSG00000117252.1 ENSMUSG00000117252 ENSMUST00000233487 Gm9514 processed_pseudogene Interval_103529 chr3 47432716 47432994 + 0 NA Intergenic Intergenic 27483 ENSMUSG00000103798.1 ENSMUSG00000103798 ENSMUST00000193328 Gm2229 processed_pseudogene Interval_136147 chr6 51507598 51508471 + 0 NA Intergenic Intergenic 30576 ENSMUSG00000029836.15 ENSMUSG00000029836 ENSMUST00000203404 Cbx3 protein_coding Interval_41568 chr12 116394134 116396540 + 0 NA Intergenic Intergenic 9873 ENSMUSG00000112980.1 ENSMUSG00000112980 ENSMUST00000220477 D430020J02Rik bidirectional_promoter_lncRNA Interval_71096 chr17 17944464 17944858 + 0 NA intron (ENSMUSG00000079700.7, intron 1 of 1) protein_coding-intron (ENSMUSG00000079700.7, intron 1 of 1) 24392 ENSMUSG00000116661.1 ENSMUSG00000116661 ENSMUST00000232161 Gm5966 unprocessed_pseudogene Interval_128228 chr5 111877249 111877553 + 0 NA Intergenic Intergenic 66834 ENSMUSG00000106060.1 ENSMUSG00000106060 ENSMUST00000197648 Gm42488 lincRNA Interval_1212 chr1 17168386 17168591 + 0 NA promoter-TSS (ENSMUSG00000099899.1) lincRNA-promoter-TSS (ENSMUSG00000099899.1) 85 ENSMUSG00000099899.1 ENSMUSG00000099899 ENSMUST00000187817 Gm28784 lincRNA Interval_52987 chr14 52769655 52770074 + 0 NA exon (ENSMUSG00000094023.3, exon 1 of 2) TR_V_gene-exon (ENSMUSG00000094023.3, exon 1 of 2) 111 ENSMUSG00000094023.3 ENSMUSG00000094023 ENSMUST00000178768 Trav7d-4 TR_V_gene Interval_139427 chr6 100096676 100097502 + 0 NA Intergenic Intergenic 46725 ENSMUSG00000107558.1 ENSMUSG00000107558 ENSMUST00000204605 2010109P13Rik TEC Interval_154622 chr8 22111885 22112242 + 0 NA intron (ENSMUSG00000037738.11, intron 4 of 15) protein_coding-intron (ENSMUSG00000037738.11, intron 6 of 19) -4170 ENSMUSG00000037738.11 ENSMUSG00000037738 ENSMUST00000213644 Nek5 protein_coding Interval_168981 chr9 89976439 89976773 + 0 NA intron (ENSMUSG00000032356.12, intron 9 of 26) protein_coding-intron (ENSMUSG00000032356.12, intron 9 of 26) -54701 ENSMUSG00000088976.1 ENSMUSG00000088976 ENSMUST00000158351 Gm23759 misc_RNA Interval_80832 chr18 47934791 47935042 + 0 NA intron (ENSMUSG00000118267.1, intron 1 of 3) sense_overlapping-intron (ENSMUSG00000118267.1, intron 1 of 3) 12075 ENSMUSG00000118267.1 ENSMUSG00000118267 ENSMUST00000236832 G630055G22Rik sense_overlapping Interval_12953 chr10 8715336 8716448 + 0 NA intron (ENSMUSG00000111215.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000111215.1, intron 1 of 1) 2651 ENSMUSG00000111215.1 ENSMUSG00000111215 ENSMUST00000213934 Gm48654 lincRNA Interval_39341 chr12 86810227 86811097 + 0 NA TTS (ENSMUSG00000088403.1) misc_RNA-TTS (ENSMUSG00000088403.1) 705 ENSMUSG00000088403.1 ENSMUSG00000088403 ENSMUST00000157778 Gm25888 misc_RNA Interval_129984 chr5 123507926 123508837 + 0 NA promoter-TSS (ENSMUSG00000086753.1) sense_overlapping-promoter-TSS (ENSMUSG00000086753.1) -14 ENSMUSG00000086753.1 ENSMUSG00000086753 ENSMUST00000134552 Gm15751 sense_overlapping Interval_10224 chr1 167297940 167298559 + 0 NA Intergenic Intergenic -1850 ENSMUSG00000102337.1 ENSMUSG00000102337 ENSMUST00000194887 Gm37232 processed_pseudogene Interval_158192 chr8 79680197 79681820 + 0 NA promoter-TSS (ENSMUSG00000094594.2) processed_pseudogene-promoter-TSS (ENSMUSG00000094594.2) -202 ENSMUSG00000094594.2 ENSMUSG00000094594 ENSMUST00000178097 Tpd52-ps processed_pseudogene Interval_165344 chr9 46442510 46444525 + 0 NA Intergenic Intergenic 46155 ENSMUSG00000110802.1 ENSMUSG00000110802 ENSMUST00000213920 Gm47141 lincRNA Interval_22462 chr11 10505745 10506061 + 0 NA Intergenic Intergenic -128821 ENSMUSG00000084045.1 ENSMUSG00000084045 ENSMUST00000118697 Gm11997 processed_pseudogene Interval_109909 chr3 151053335 151053609 + 0 NA Intergenic Intergenic -17915 ENSMUSG00000105125.1 ENSMUSG00000105125 ENSMUST00000199769 Gm43468 lincRNA Interval_124249 chr5 42176218 42176688 + 0 NA intron (ENSMUSG00000067285.4, intron 1 of 2) protein_coding-intron (ENSMUSG00000067285.4, intron 1 of 2) 108493 ENSMUSG00000067285.4 ENSMUSG00000067285 ENSMUST00000087332 Gm16223 protein_coding Interval_42467 chr13 13835299 13835499 + 0 NA Intergenic Intergenic -6843 ENSMUSG00000113493.1 ENSMUSG00000113493 ENSMUST00000220697 Gm7441 processed_pseudogene Interval_130533 chr5 128608967 128610028 + 0 NA Intergenic Intergenic 8653 ENSMUSG00000081683.5 ENSMUSG00000081683 ENSMUST00000117102 Fzd10 protein_coding Interval_12123 chr1 189882839 189884377 + 0 NA exon (ENSMUSG00000104435.1, exon 1 of 1) antisense-exon (ENSMUSG00000104435.1, exon 1 of 1) 3673 ENSMUSG00000104435.1 ENSMUSG00000104435 ENSMUST00000193794 Gm37422 antisense Interval_113386 chr4 54044655 54044897 + 0 NA Intergenic Intergenic 40719 ENSMUSG00000089552.1 ENSMUSG00000089552 ENSMUST00000158927 Gm24177 snoRNA Interval_94692 chr2 93415223 93415508 + 0 NA intron (ENSMUSG00000085852.1, intron 3 of 5) antisense-intron (ENSMUSG00000085852.1, intron 3 of 5) 6642 ENSMUSG00000099238.1 ENSMUSG00000099238 ENSMUST00000184769 Mir7001 miRNA Interval_1268 chr1 18760823 18761110 + 0 NA Intergenic Intergenic 52538 ENSMUSG00000101306.1 ENSMUSG00000101306 ENSMUST00000189030 Gm5252 processed_pseudogene Interval_16313 chr10 62135630 62136355 + 0 NA intron (ENSMUSG00000020083.13, intron 1 of 3) protein_coding-intron (ENSMUSG00000020083.13, intron 1 of 2) -1286 ENSMUSG00000020083.13 ENSMUSG00000020083 ENSMUST00000138450 Fam241b protein_coding Interval_160600 chr8 110946310 110946796 + 0 NA intron (ENSMUSG00000031749.12, intron 1 of 1) protein_coding-intron (ENSMUSG00000031749.12, intron 1 of 6) 4918 ENSMUSG00000118587.1 ENSMUSG00000118587 ENSMUST00000239383 AC132945.1 unprocessed_pseudogene Interval_51761 chr14 32040056 32040308 + 0 NA intron (ENSMUSG00000021903.11, intron 1 of 7) protein_coding-intron (ENSMUSG00000021903.11, intron 1 of 9) -3844 ENSMUSG00000115628.1 ENSMUSG00000115628 ENSMUST00000228805 Gm49084 processed_pseudogene Interval_34747 chr12 9292858 9293764 + 0 NA Intergenic Intergenic -78127 ENSMUSG00000113913.1 ENSMUSG00000113913 ENSMUST00000223136 Gm46323 lincRNA Interval_167687 chr9 71970757 71972580 + 0 NA intron (ENSMUSG00000032228.16, intron 1 of 8) protein_coding-intron (ENSMUSG00000032228.16, intron 5 of 19) 19603 ENSMUSG00000104469.1 ENSMUSG00000104469 ENSMUST00000191887 Gm37663 TEC Interval_84361 chr19 10372924 10373590 + 0 NA Intergenic Intergenic -16226 ENSMUSG00000024743.16 ENSMUSG00000024743 ENSMUST00000235717 Syt7 protein_coding Interval_123298 chr5 31199878 31200678 + 0 NA promoter-TSS (ENSMUSG00000043059.16) protein_coding-promoter-TSS (ENSMUSG00000043059.16) 1937 ENSMUSG00000043059.16 ENSMUSG00000043059 ENSMUST00000201231 Zfp513 protein_coding Interval_129521 chr5 120694115 120695046 + 0 NA TTS (ENSMUSG00000029603.15) protein_coding-TTS (ENSMUSG00000029603.15) -12501 ENSMUSG00000029603.15 ENSMUSG00000029603 ENSMUST00000124079 Dtx1 protein_coding Interval_23469 chr11 22805313 22805524 + 0 NA intron (ENSMUSG00000051650.11, intron 1 of 5) protein_coding-intron (ENSMUSG00000051650.11, intron 1 of 5) -18171 ENSMUSG00000082576.1 ENSMUSG00000082576 ENSMUST00000118614 Gm12058 processed_pseudogene Interval_107395 chr3 107270142 107270382 + 0 NA Intergenic Intergenic -8737 ENSMUSG00000087260.5 ENSMUSG00000087260 ENSMUST00000199317 Lamtor5 protein_coding Interval_109779 chr3 146914644 146915077 + 0 NA intron (ENSMUSG00000036745.15, intron 9 of 20) protein_coding-intron (ENSMUSG00000036745.15, intron 9 of 21) -29060 ENSMUSG00000036745.15 ENSMUSG00000036745 ENSMUST00000197547 Ttll7 protein_coding Interval_14413 chr10 33313899 33314285 + 0 NA intron (ENSMUSG00000019787.9, intron 6 of 9) protein_coding-intron (ENSMUSG00000019787.9, intron 13 of 37) -13414 ENSMUSG00000112692.1 ENSMUSG00000112692 ENSMUST00000219978 Gm19073 processed_pseudogene Interval_155344 chr8 32002969 32003212 + 0 NA intron (ENSMUSG00000062991.9, intron 1 of 12) protein_coding-intron (ENSMUSG00000062991.9, intron 1 of 11) 6019 ENSMUSG00000062991.9 ENSMUSG00000062991 ENSMUST00000208206 Nrg1 protein_coding Interval_78862 chr18 21030344 21030596 + 0 NA Intergenic Intergenic 28375 ENSMUSG00000024317.15 ENSMUSG00000024317 ENSMUST00000234169 Rnf138 protein_coding Interval_138055 chr6 84764041 84765400 + 0 NA intron (ENSMUSG00000033769.16, intron 19 of 21) protein_coding-intron (ENSMUSG00000033769.16, intron 19 of 21) -47520 ENSMUSG00000098142.1 ENSMUSG00000098142 ENSMUST00000183053 Gm7507 processed_pseudogene Interval_72553 chr17 30645000 30645839 + 0 NA intron (ENSMUSG00000033826.10, intron 5 of 10) protein_coding-intron (ENSMUSG00000033826.10, intron 5 of 92) -18514 ENSMUSG00000099474.1 ENSMUSG00000099474 ENSMUST00000188852 1700097N02Rik bidirectional_promoter_lncRNA Interval_28523 chr11 76493441 76495230 + 0 NA promoter-TSS (ENSMUSG00000017631.19) protein_coding-promoter-TSS (ENSMUSG00000017631.19) -19734 ENSMUSG00000080763.2 ENSMUSG00000080763 ENSMUST00000119724 Gm12341 processed_pseudogene Interval_90794 chr2 32637718 32638266 + 0 NA Intergenic Intergenic 12554 ENSMUSG00000026817.14 ENSMUSG00000026817 ENSMUST00000135392 Ak1 protein_coding Interval_163470 chr9 21587488 21588176 + 0 NA TTS (ENSMUSG00000032182.15) protein_coding-TTS (ENSMUSG00000032182.15) 487 ENSMUSG00000032185.15 ENSMUSG00000032185 ENSMUST00000130100 Carm1 protein_coding Interval_147031 chr7 58797396 58797729 + 0 NA exon (ENSMUSG00000025324.8, exon 10 of 21) protein_coding-exon (ENSMUSG00000025324.8, exon 10 of 21) 40376 ENSMUSG00000086926.2 ENSMUSG00000086926 ENSMUST00000117765 Gm6226 processed_pseudogene Interval_162196 chr8 125859075 125859727 + 0 NA intron (ENSMUSG00000060212.13, intron 12 of 16) protein_coding-intron (ENSMUSG00000060212.13, intron 12 of 33) -30368 ENSMUSG00000060212.13 ENSMUSG00000060212 ENSMUST00000187772 Pcnx2 protein_coding Interval_99906 chr2 165739854 165741224 + 0 NA intron (ENSMUSG00000017897.18, intron 4 of 6) protein_coding-intron (ENSMUSG00000017897.18, intron 9 of 15) -73682 ENSMUSG00000081758.1 ENSMUSG00000081758 ENSMUST00000118200 Gm11460 processed_pseudogene Interval_134698 chr6 30476319 30477943 + 0 NA Intergenic Intergenic 15048 ENSMUSG00000029782.20 ENSMUSG00000029782 ENSMUST00000148638 Tmem209 protein_coding Interval_169346 chr9 96558795 96559203 + 0 NA exon (ENSMUSG00000032413.12, exon 1 of 1) protein_coding-exon (ENSMUSG00000032413.12, exon 1 of 1) -9290 ENSMUSG00000084701.1 ENSMUSG00000084701 ENSMUST00000122752 n-R5s87 rRNA Interval_156416 chr8 48001947 48002863 + 0 NA exon (ENSMUSG00000110624.1, exon 3 of 3) lincRNA-exon (ENSMUSG00000110624.1, exon 3 of 3) 6728 ENSMUSG00000110624.1 ENSMUSG00000110624 ENSMUST00000212073 Gm32052 lincRNA Interval_30319 chr11 93580206 93580469 + 0 NA intron (ENSMUSG00000056158.14, intron 5 of 8) protein_coding-intron (ENSMUSG00000056158.14, intron 6 of 9) -70422 ENSMUSG00000082453.1 ENSMUSG00000082453 ENSMUST00000120917 Gm11502 processed_pseudogene Interval_20462 chr10 117755483 117755937 + 0 NA intron (ENSMUSG00000052798.13, intron 26 of 27) protein_coding-intron (ENSMUSG00000052798.13, intron 26 of 27) -10768 ENSMUSG00000060181.6 ENSMUSG00000060181 ENSMUST00000219482 Slc35e3 protein_coding Interval_27884 chr11 70622147 70623704 + 0 NA TTS (ENSMUSG00000085952.1) lincRNA-TTS (ENSMUSG00000085952.1) 2636 ENSMUSG00000085952.1 ENSMUSG00000085952 ENSMUST00000151599 Gm12315 lincRNA Interval_95891 chr2 118123457 118124192 + 0 NA TTS (ENSMUSG00000040152.8) protein_coding-TTS (ENSMUSG00000040152.8) 223 ENSMUSG00000101859.1 ENSMUSG00000101859 ENSMUST00000190311 Gm29233 lincRNA Interval_142487 chr6 142788262 142788943 + 0 NA intron (ENSMUSG00000048473.15, intron 6 of 6) protein_coding-intron (ENSMUSG00000048473.15, intron 5 of 5) 15900 ENSMUSG00000048473.15 ENSMUSG00000048473 ENSMUST00000111768 Sult6b2 protein_coding Interval_163623 chr9 22665056 22665397 + 0 NA intron (ENSMUSG00000035919.16, intron 17 of 22) protein_coding-intron (ENSMUSG00000035919.16, intron 16 of 21) 5302 ENSMUSG00000089958.1 ENSMUSG00000089958 ENSMUST00000160140 Gm16165 processed_pseudogene Interval_81186 chr18 56080052 56080417 + 0 NA Intergenic Intergenic -92707 ENSMUSG00000088617.1 ENSMUSG00000088617 ENSMUST00000157992 Gm22484 misc_RNA Interval_106839 chr3 101236621 101237411 + 0 NA Intergenic Intergenic 3556 ENSMUSG00000083546.1 ENSMUSG00000083546 ENSMUST00000120257 Tpt1-ps1 processed_pseudogene Interval_19225 chr10 95604984 95605743 + 0 NA Intergenic Intergenic 1571 ENSMUSG00000089618.1 ENSMUSG00000089618 ENSMUST00000158993 Gm23776 misc_RNA Interval_124233 chr5 41789228 41789559 + 0 NA intron (ENSMUSG00000061755.10, intron 25 of 25) protein_coding-intron (ENSMUSG00000061755.10, intron 26 of 26) -24892 ENSMUSG00000049691.8 ENSMUSG00000049691 ENSMUST00000060820 Nkx3-2 protein_coding Interval_107179 chr3 104373986 104374365 + 0 NA Intergenic Intergenic -7562 ENSMUSG00000022187.2 ENSMUSG00000022187 ENSMUST00000056145 Gm5546 lincRNA Interval_146901 chr7 55701357 55702832 + 0 NA promoter-TSS (ENSMUSG00000088640.1) snRNA-promoter-TSS (ENSMUSG00000088640.1) -60 ENSMUSG00000088640.1 ENSMUSG00000088640 ENSMUST00000158015 Gm26482 snRNA Interval_53059 chr14 54097546 54098817 + 0 NA intron (ENSMUSG00000104658.4, intron 2 of 2) antisense-intron (ENSMUSG00000104658.4, intron 2 of 2) -15287 ENSMUSG00000096749.2 ENSMUSG00000096749 ENSMUST00000179664 Trdd1 TR_D_gene Interval_13107 chr10 11449551 11450569 + 0 NA intron (ENSMUSG00000055493.4, intron 3 of 3) protein_coding-intron (ENSMUSG00000055493.4, intron 3 of 3) -55236 ENSMUSG00000111949.1 ENSMUSG00000111949 ENSMUST00000219639 Gm48679 processed_pseudogene Interval_2058 chr1 36157817 36158934 + 0 NA intron (ENSMUSG00000037470.14, intron 31 of 39) protein_coding-intron (ENSMUSG00000037470.14, intron 32 of 40) -14062 ENSMUSG00000098752.1 ENSMUSG00000098752 ENSMUST00000184790 Mir6897 miRNA Interval_37323 chr12 65119066 65119650 + 0 NA intron (ENSMUSG00000055884.8, intron 18 of 22) protein_coding-intron (ENSMUSG00000055884.8, intron 18 of 22) -19352 ENSMUSG00000112992.1 ENSMUSG00000112992 ENSMUST00000223249 Gm47869 processed_pseudogene Interval_147712 chr7 72399898 72400505 + 0 NA Intergenic Intergenic -170841 ENSMUSG00000032776.9 ENSMUSG00000032776 ENSMUST00000206755 Mctp2 protein_coding Interval_37094 chr12 57850809 57851141 + 0 NA Intergenic Intergenic -100236 ENSMUSG00000112704.1 ENSMUSG00000112704 ENSMUST00000218373 Gm46329 lincRNA Interval_153065 chr7 141147003 141147443 + 0 NA TTS (ENSMUSG00000025495.15) protein_coding-TTS (ENSMUSG00000025495.15) 14773 ENSMUSG00000025495.15 ENSMUSG00000025495 ENSMUST00000209928 Ptdss2 protein_coding Interval_101690 chr3 8963860 8964994 + 0 NA promoter-TSS (ENSMUSG00000027506.15) protein_coding-promoter-TSS (ENSMUSG00000027506.15) 40051 ENSMUSG00000027506.15 ENSMUSG00000027506 ENSMUST00000155450 Tpd52 protein_coding Interval_141327 chr6 127266649 127267356 + 0 NA Intergenic Intergenic -12358 ENSMUSG00000107013.1 ENSMUSG00000107013 ENSMUST00000202533 Gm43635 lincRNA Interval_66445 chr16 33886287 33887299 + 0 NA intron (ENSMUSG00000022817.15, intron 5 of 14) protein_coding-intron (ENSMUSG00000022817.15, intron 5 of 14) -5148 ENSMUSG00000022817.15 ENSMUSG00000022817 ENSMUST00000231409 Itgb5 protein_coding Interval_1696 chr1 31335289 31335848 + 0 NA Intergenic Intergenic 48623 ENSMUSG00000094215.2 ENSMUSG00000094215 ENSMUST00000178167 Gm6489 processed_pseudogene Interval_172067 chrM 10931 16157 + 0 NA promoter-TSS (ENSMUSG00000064370.1) protein_coding-promoter-TSS (ENSMUSG00000064370.1) 526 ENSMUSG00000064368.1 ENSMUSG00000064368 ENSMUST00000082419 mt-Nd6 protein_coding Interval_48820 chr13 103695982 103696775 + 0 NA intron (ENSMUSG00000114206.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000114206.1, intron 1 of 3) 11241 ENSMUSG00000114206.1 ENSMUSG00000114206 ENSMUST00000225860 Gm30551 lincRNA Interval_18945 chr10 93294356 93295033 + 0 NA intron (ENSMUSG00000008398.16, intron 1 of 3) protein_coding-intron (ENSMUSG00000008398.16, intron 1 of 4) 16275 ENSMUSG00000008398.16 ENSMUSG00000008398 ENSMUST00000133365 Elk3 protein_coding Interval_132975 chr5 149046400 149046938 + 0 NA TTS (ENSMUSG00000066551.12) protein_coding-TTS (ENSMUSG00000066551.12) -30856 ENSMUSG00000085971.4 ENSMUSG00000085971 ENSMUST00000202128 Gm15411 processed_transcript Interval_39726 chr12 95585186 95586161 + 0 NA Intergenic Intergenic -34145 ENSMUSG00000064412.1 ENSMUSG00000064412 ENSMUST00000082478 Gm22246 snRNA Interval_170473 chr9 108204638 108205187 + 0 NA exon (ENSMUSG00000039952.15, exon 4 of 4) protein_coding-exon (ENSMUSG00000039952.15, exon 4 of 4) -13564 ENSMUSG00000102538.1 ENSMUSG00000102538 ENSMUST00000194491 Gm37230 TEC Interval_30468 chr11 94570573 94571122 + 0 NA promoter-TSS (ENSMUSG00000076435.3) protein_coding-promoter-TSS (ENSMUSG00000076435.3) 5800 ENSMUSG00000039084.8 ENSMUSG00000039084 ENSMUST00000040418 Chad protein_coding Interval_67565 chr16 50943055 50944808 + 0 NA Intergenic Intergenic -23283 ENSMUSG00000094301.1 ENSMUSG00000094301 ENSMUST00000178157 Gm24925 snRNA Interval_159786 chr8 103442019 103442703 + 0 NA Intergenic Intergenic -94827 ENSMUSG00000110340.1 ENSMUSG00000110340 ENSMUST00000209501 1600027J07Rik lincRNA Interval_118480 chr4 131927252 131928237 + 0 NA intron (ENSMUSG00000028906.17, intron 4 of 5) protein_coding-intron (ENSMUSG00000028906.17, intron 19 of 20) -6216 ENSMUSG00000118394.1 ENSMUSG00000118394 ENSMUST00000238664 Gm50475 lincRNA Interval_120316 chr4 145398358 145398702 + 0 NA Intergenic Intergenic -5776 ENSMUSG00000084272.1 ENSMUSG00000084272 ENSMUST00000119586 Gm13224 processed_pseudogene Interval_123660 chr5 34356135 34356451 + 0 NA TTS (ENSMUSG00000029110.13) protein_coding-TTS (ENSMUSG00000029110.13) 5177 ENSMUSG00000029110.13 ENSMUSG00000029110 ENSMUST00000183265 Rnf4 protein_coding Interval_31364 chr11 100274379 100275908 + 0 NA Intergenic Intergenic -9165 ENSMUSG00000053654.7 ENSMUSG00000053654 ENSMUST00000017270 Krt42 protein_coding Interval_71964 chr17 27256251 27257849 + 0 NA exon (ENSMUSG00000117794.1, exon 2 of 2) lincRNA-exon (ENSMUSG00000117794.1, exon 2 of 2) -8984 ENSMUSG00000117916.1 ENSMUSG00000117916 ENSMUST00000236498 9630028I04Rik lincRNA Interval_70383 chr17 9609167 9611161 + 0 NA Intergenic Intergenic 59553 ENSMUSG00000046173.3 ENSMUSG00000046173 ENSMUST00000057190 Pabpc6 protein_coding Interval_107999 chr3 119340936 119341386 + 0 NA intron (ENSMUSG00000033308.16, intron 20 of 22) protein_coding-intron (ENSMUSG00000033308.16, intron 20 of 22) 297713 ENSMUSG00000087806.1 ENSMUSG00000087806 ENSMUST00000157181 Gm23432 snoRNA Interval_77721 chr17 94680467 94680641 + 0 NA Intergenic Intergenic -12335 ENSMUSG00000117586.1 ENSMUSG00000117586 ENSMUST00000234452 Gm50006 processed_pseudogene Interval_5010 chr1 84182589 84183700 + 0 NA intron (ENSMUSG00000045658.16, intron 1 of 2) protein_coding-intron (ENSMUSG00000045658.16, intron 1 of 2) 14956 ENSMUSG00000101934.1 ENSMUSG00000101934 ENSMUST00000189162 Gm18304 processed_pseudogene Interval_4007 chr1 66266376 66266787 + 0 NA intron (ENSMUSG00000015222.18, intron 2 of 4) protein_coding-intron (ENSMUSG00000015222.18, intron 1 of 11) -39308 ENSMUSG00000088850.1 ENSMUSG00000088850 ENSMUST00000158225 Gm24729 snoRNA Interval_156120 chr8 44950371 44950803 + 0 NA exon (ENSMUSG00000070047.14, exon 1 of 26) protein_coding-exon (ENSMUSG00000070047.14, exon 1 of 26) 373 ENSMUSG00000070047.14 ENSMUSG00000070047 ENSMUST00000189367 Fat1 protein_coding Interval_10020 chr1 165114694 165115129 + 0 NA Intergenic Intergenic -22983 ENSMUSG00000102408.1 ENSMUSG00000102408 ENSMUST00000195635 4930568G15Rik lincRNA Interval_78273 chr18 11112183 11113437 + 0 NA Intergenic Intergenic 59766 ENSMUSG00000005836.10 ENSMUSG00000005836 ENSMUST00000234971 Gata6 protein_coding Interval_150980 chr7 117303627 117303812 + 0 NA Intergenic Intergenic 74112 ENSMUSG00000108303.1 ENSMUSG00000108303 ENSMUST00000206031 Gm39075 lincRNA Interval_132121 chr5 142841921 142842590 + 0 NA Intergenic Intergenic 10944 ENSMUSG00000082308.1 ENSMUSG00000082308 ENSMUST00000117498 Gm15770 processed_pseudogene Interval_92231 chr2 57229675 57230588 + 0 NA Intergenic Intergenic -7547 ENSMUSG00000026827.12 ENSMUSG00000026827 ENSMUST00000154612 Gpd2 protein_coding Interval_67573 chr16 51016588 51016855 + 0 NA Intergenic Intergenic -34409 ENSMUSG00000116706.1 ENSMUSG00000116706 ENSMUST00000231893 Gm32431 lincRNA Interval_54461 chr14 69943240 69943513 + 0 NA intron (ENSMUSG00000022085.4, intron 3 of 6) protein_coding-intron (ENSMUSG00000022085.4, intron 3 of 6) 102956 ENSMUSG00000022085.4 ENSMUSG00000022085 ENSMUST00000022678 Pebp4 protein_coding Interval_101466 chr2 181598512 181599423 + 0 NA exon (ENSMUSG00000038605.11, exon 1 of 5) protein_coding-exon (ENSMUSG00000038605.11, exon 1 of 5) 231 ENSMUSG00000038605.11 ENSMUSG00000038605 ENSMUST00000136249 Samd10 protein_coding Interval_73846 chr17 44528273 44528578 + 0 NA intron (ENSMUSG00000039153.17, intron 6 of 6) protein_coding-intron (ENSMUSG00000039153.17, intron 5 of 5) -33565 ENSMUSG00000090048.1 ENSMUSG00000090048 ENSMUST00000160203 Runx2os3 antisense Interval_22579 chr11 11908082 11908497 + 0 NA Intergenic Intergenic 5459 ENSMUSG00000087990.2 ENSMUSG00000087990 ENSMUST00000157365 Gm25058 scaRNA Interval_71342 chr17 22423637 22425212 + 0 NA exon (ENSMUSG00000071266.13, exon 1 of 7) protein_coding-exon (ENSMUSG00000071266.13, exon 1 of 7) -26699 ENSMUSG00000071266.13 ENSMUSG00000071266 ENSMUST00000167740 Zfp946 protein_coding Interval_143797 chr7 16373884 16374145 + 0 NA intron (ENSMUSG00000052833.9, intron 2 of 8) protein_coding-intron (ENSMUSG00000052833.9, intron 2 of 8) 13792 ENSMUSG00000052833.9 ENSMUSG00000052833 ENSMUST00000209749 Sae1 protein_coding Interval_151322 chr7 121013151 121013426 + 0 NA intron (ENSMUSG00000030877.11, intron 3 of 3) protein_coding-intron (ENSMUSG00000030877.11, intron 7 of 7) 2345 ENSMUSG00000058050.5 ENSMUSG00000058050 ENSMUST00000077747 Gm9234 processed_pseudogene Interval_130488 chr5 128267948 128268486 + 0 NA TTS (ENSMUSG00000034310.8) protein_coding-TTS (ENSMUSG00000034310.8) 7600 ENSMUSG00000034310.8 ENSMUSG00000034310 ENSMUST00000200316 Tmem132d protein_coding Interval_133625 chr6 7740182 7740807 + 0 NA Intergenic Intergenic -25900 ENSMUSG00000107394.1 ENSMUSG00000107394 ENSMUST00000203458 1700012J15Rik lincRNA Interval_68345 chr16 73775905 73776184 + 0 NA Intergenic Intergenic -171992 ENSMUSG00000116642.1 ENSMUSG00000116642 ENSMUST00000231958 Gm18168 unprocessed_pseudogene Interval_173240 chrX 75109008 75110188 + 0 NA TTS (ENSMUSG00000031402.12) protein_coding-TTS (ENSMUSG00000031402.12) 8189 ENSMUSG00000089014.1 ENSMUSG00000089014 ENSMUST00000158389 Gm25520 snoRNA Interval_54683 chr14 73265017 73265478 + 0 NA promoter-TSS (ENSMUSG00000022105.6) protein_coding-promoter-TSS (ENSMUSG00000022105.6) -25461 ENSMUSG00000022105.6 ENSMUSG00000022105 ENSMUST00000164624 Rb1 protein_coding Interval_39187 chr12 85679810 85680313 + 0 NA Intergenic Intergenic -9231 ENSMUSG00000034266.6 ENSMUSG00000034266 ENSMUST00000222781 Batf protein_coding Interval_27190 chr11 63936597 63937165 + 0 NA Intergenic Intergenic -14591 ENSMUSG00000070407.5 ENSMUSG00000070407 ENSMUST00000094103 Hs3st3b1 protein_coding Interval_119399 chr4 137468100 137471274 + 0 NA intron (ENSMUSG00000028763.18, intron 1 of 96) protein_coding-intron (ENSMUSG00000028763.18, intron 1 of 96) 16403 ENSMUSG00000041399.3 ENSMUSG00000041399 ENSMUST00000048893 1700013G24Rik protein_coding Interval_87777 chr19 55794340 55794687 + 0 NA intron (ENSMUSG00000024985.20, intron 4 of 14) protein_coding-intron (ENSMUSG00000024985.20, intron 3 of 11) -47159 ENSMUSG00000099746.1 ENSMUSG00000099746 ENSMUST00000190974 Ppnr sense_intronic Interval_80933 chr18 50460545 50460763 + 0 NA Intergenic Intergenic 140765 ENSMUSG00000048875.3 ENSMUSG00000048875 ENSMUST00000056460 Pudp protein_coding Interval_123612 chr5 33794222 33795306 + 0 NA Intergenic Intergenic -12050 ENSMUSG00000005299.6 ENSMUSG00000005299 ENSMUST00000148451 Letm1 protein_coding Interval_41120 chr12 111309223 111310696 + 0 NA intron (ENSMUSG00000021279.5, intron 21 of 36) protein_coding-intron (ENSMUSG00000021279.5, intron 21 of 36) 4578 ENSMUSG00000021279.5 ENSMUSG00000021279 ENSMUST00000222196 Cdc42bpb protein_coding Interval_122081 chr5 16553346 16554242 + 0 NA promoter-TSS (ENSMUSG00000028864.7) protein_coding-promoter-TSS (ENSMUSG00000028864.7) 215 ENSMUSG00000028864.7 ENSMUSG00000028864 ENSMUST00000196645 Hgf protein_coding Interval_31521 chr11 101143545 101144421 + 0 NA Intergenic Intergenic -3474 ENSMUSG00000092762.2 ENSMUSG00000092762 ENSMUST00000175021 Gm27626 miRNA Interval_36801 chr12 54164495 54165167 + 0 NA Intergenic Intergenic 39029 ENSMUSG00000035105.5 ENSMUSG00000035105 ENSMUST00000039516 Egln3 protein_coding Interval_50872 chr14 20368097 20368522 + 0 NA TTS (ENSMUSG00000039599.16) protein_coding-TTS (ENSMUSG00000039599.16) 10567 ENSMUSG00000114937.1 ENSMUSG00000114937 ENSMUST00000225363 Gm30054 antisense Interval_115608 chr4 101363908 101364256 + 0 NA intron (ENSMUSG00000087361.7, intron 1 of 3) lincRNA-intron (ENSMUSG00000087361.7, intron 1 of 3) -1192 ENSMUSG00000083614.1 ENSMUSG00000083614 ENSMUST00000117594 Gm12795 processed_pseudogene Interval_73985 chr17 45848777 45849001 + 0 NA Intergenic Intergenic -26566 ENSMUSG00000117139.1 ENSMUSG00000117139 ENSMUST00000233237 Gm35692 lincRNA Interval_159977 chr8 105533347 105534435 + 0 NA intron (ENSMUSG00000013160.7, intron 1 of 1) protein_coding-intron (ENSMUSG00000013160.7, intron 2 of 7) 5585 ENSMUSG00000013160.7 ENSMUSG00000013160 ENSMUST00000144486 Atp6v0d1 protein_coding Interval_65740 chr16 26598733 26598960 + 0 NA intron (ENSMUSG00000022514.14, intron 1 of 7) protein_coding-intron (ENSMUSG00000022514.14, intron 1 of 10) -72077 ENSMUSG00000091972.2 ENSMUSG00000091972 ENSMUST00000165687 Tmem207 protein_coding Interval_40638 chr12 106209793 106210013 + 0 NA Intergenic Intergenic -11172 ENSMUSG00000077640.1 ENSMUSG00000077640 ENSMUST00000104452 Gm24986 snoRNA Interval_24152 chr11 30760556 30762161 + 0 NA Intergenic Intergenic -6397 ENSMUSG00000083990.1 ENSMUSG00000083990 ENSMUST00000121590 Gm12101 processed_pseudogene Interval_65550 chr16 23258991 23259447 + 0 NA intron (ENSMUSG00000022885.16, intron 2 of 7) protein_coding-intron (ENSMUSG00000022885.16, intron 2 of 7) 33198 ENSMUSG00000022885.16 ENSMUSG00000022885 ENSMUST00000115335 St6gal1 protein_coding Interval_129580 chr5 121114145 121114526 + 0 NA Intergenic Intergenic 29300 ENSMUSG00000043733.14 ENSMUSG00000043733 ENSMUST00000148871 Ptpn11 protein_coding Interval_170093 chr9 104389963 104390483 + 0 NA Intergenic Intergenic 28391 ENSMUSG00000099599.1 ENSMUSG00000099599 ENSMUST00000191599 Gm28548 lincRNA Interval_114055 chr4 62780272 62781535 + 0 NA Intergenic Intergenic -31525 ENSMUSG00000077161.1 ENSMUSG00000077161 ENSMUST00000103973 Gm24117 snoRNA Interval_144611 chr7 27117881 27118853 + 0 NA Intergenic Intergenic -3525 ENSMUSG00000052974.8 ENSMUSG00000052974 ENSMUST00000206552 Cyp2f2 protein_coding Interval_157242 chr8 68360059 68360660 + 0 NA intron (ENSMUSG00000036356.15, intron 10 of 10) protein_coding-intron (ENSMUSG00000036356.15, intron 9 of 9) -8107 ENSMUSG00000085197.7 ENSMUSG00000085197 ENSMUST00000139265 1700125H03Rik antisense Interval_82278 chr18 69900573 69900959 + 0 NA intron (ENSMUSG00000118028.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000118028.1, intron 1 of 1) 9958 ENSMUSG00000118028.1 ENSMUSG00000118028 ENSMUST00000235804 Gm50215 lincRNA Interval_17724 chr10 79754803 79757227 + 0 NA intron (ENSMUSG00000020327.4, intron 1 of 2) protein_coding-intron (ENSMUSG00000020327.4, intron 1 of 1) 939 ENSMUSG00000020327.4 ENSMUSG00000020327 ENSMUST00000020577 Fgf22 protein_coding Interval_162594 chr9 5531828 5532322 + 0 NA Intergenic Intergenic 186599 ENSMUSG00000025887.10 ENSMUSG00000025887 ENSMUST00000151332 Casp12 protein_coding Interval_173758 chrX 103484400 103484645 + 0 NA exon (ENSMUSG00000085715.2, exon 4 of 4) antisense-exon (ENSMUSG00000085715.2, exon 4 of 4) -2412 ENSMUSG00000083502.1 ENSMUSG00000083502 ENSMUST00000119451 Gm14861 processed_pseudogene Interval_120856 chr4 151082657 151083132 + 0 NA intron (ENSMUSG00000014592.21, intron 16 of 24) protein_coding-intron (ENSMUSG00000014592.21, intron 16 of 23) -6676 ENSMUSG00000078491.2 ENSMUSG00000078491 ENSMUST00000105667 Gm13090 protein_coding Interval_74629 chr17 53973363 53974007 + 0 NA intron (ENSMUSG00000023943.7, intron 2 of 7) protein_coding-intron (ENSMUSG00000023943.7, intron 2 of 7) 16989 ENSMUSG00000023943.7 ENSMUSG00000023943 ENSMUST00000024738 Sult1c1 protein_coding Interval_11452 chr1 181986968 181987962 + 0 NA exon (ENSMUSG00000102950.1, exon 1 of 1) TEC-exon (ENSMUSG00000102950.1, exon 1 of 1) 2739 ENSMUSG00000102950.1 ENSMUSG00000102950 ENSMUST00000192441 Gm37018 TEC Interval_6030 chr1 94227955 94229051 + 0 NA Intergenic Intergenic 24086 ENSMUSG00000100990.1 ENSMUSG00000100990 ENSMUST00000190284 Gm7891 processed_pseudogene Interval_107748 chr3 112985074 112985534 + 0 NA Intergenic Intergenic -34571 ENSMUSG00000105588.1 ENSMUSG00000105588 ENSMUST00000197716 Utp14b-ps1 processed_pseudogene Interval_34004 chr11 119941948 119943612 + 0 NA promoter-TSS (ENSMUSG00000025372.16) protein_coding-promoter-TSS (ENSMUSG00000025372.16) -82 ENSMUSG00000085207.1 ENSMUSG00000085207 ENSMUST00000129379 Gm11767 antisense Interval_149165 chr7 95688190 95688434 + 0 NA Intergenic Intergenic 213366 ENSMUSG00000108429.1 ENSMUSG00000108429 ENSMUST00000206820 Gm44603 processed_pseudogene Interval_116615 chr4 116067231 116068630 + 0 NA TTS (ENSMUSG00000078238.4) processed_pseudogene-TTS (ENSMUSG00000078238.4) 662 ENSMUSG00000078238.4 ENSMUSG00000078238 ENSMUST00000128518 Gm12854 processed_pseudogene Interval_113117 chr4 48447139 48447920 + 0 NA intron (ENSMUSG00000028345.15, intron 12 of 15) protein_coding-intron (ENSMUSG00000028345.15, intron 11 of 14) 25893 ENSMUSG00000028345.15 ENSMUSG00000028345 ENSMUST00000132911 Tex10 protein_coding Interval_8500 chr1 140204565 140206027 + 0 NA Intergenic Intergenic -21532 ENSMUSG00000026365.15 ENSMUSG00000026365 ENSMUST00000194688 Cfh protein_coding Interval_37762 chr12 71812796 71814355 + 0 NA Intergenic Intergenic -17503 ENSMUSG00000034574.10 ENSMUSG00000034574 ENSMUST00000221317 Daam1 protein_coding Interval_54701 chr14 73474666 73475009 + 0 NA Intergenic Intergenic -18256 ENSMUSG00000115530.1 ENSMUSG00000115530 ENSMUST00000226353 Gm4266 processed_pseudogene Interval_90938 chr2 33594537 33595601 + 0 NA intron (ENSMUSG00000038765.14, intron 2 of 7) protein_coding-intron (ENSMUSG00000038765.14, intron 2 of 7) -19329 ENSMUSG00000104403.1 ENSMUSG00000104403 ENSMUST00000193312 Gm38011 TEC Interval_67934 chr16 59683569 59684019 + 0 NA intron (ENSMUSG00000055540.15, intron 14 of 17) protein_coding-intron (ENSMUSG00000055540.15, intron 14 of 17) 44585 ENSMUSG00000116894.1 ENSMUSG00000116894 ENSMUST00000232302 4930547E14Rik processed_transcript Interval_17166 chr10 73294207 73295157 + 0 NA intron (ENSMUSG00000085456.2, intron 2 of 3) protein_coding-intron (ENSMUSG00000052613.16, intron 1 of 13) 18945 ENSMUSG00000112838.1 ENSMUSG00000112838 ENSMUST00000220399 Gm47098 processed_pseudogene Interval_120683 chr4 150086896 150088104 + 0 NA exon (ENSMUSG00000047875.6, exon 1 of 4) protein_coding-exon (ENSMUSG00000047875.6, exon 1 of 4) 135 ENSMUSG00000047875.6 ENSMUSG00000047875 ENSMUST00000094451 Gpr157 protein_coding Interval_161076 chr8 117322421 117323441 + 0 NA intron (ENSMUSG00000034390.16, intron 1 of 10) protein_coding-intron (ENSMUSG00000034390.16, intron 1 of 20) -100485 ENSMUSG00000034390.16 ENSMUSG00000034390 ENSMUST00000212884 Cmip protein_coding Interval_68006 chr16 63062207 63063824 + 0 NA intron (ENSMUSG00000116574.1, intron 3 of 4) lincRNA-intron (ENSMUSG00000116574.1, intron 3 of 4) -48675 ENSMUSG00000116612.1 ENSMUSG00000116612 ENSMUST00000231788 Gm49621 processed_pseudogene Interval_133067 chr5 149606727 149607220 + 0 NA intron (ENSMUSG00000029658.17, intron 22 of 22) protein_coding-intron (ENSMUSG00000029658.17, intron 22 of 22) 29365 ENSMUSG00000029657.15 ENSMUSG00000029657 ENSMUST00000201666 Hsph1 protein_coding Interval_125938 chr5 76013946 76014216 + 0 NA Intergenic Intergenic -7640 ENSMUSG00000089481.1 ENSMUSG00000089481 ENSMUST00000158856 Gm24738 rRNA Interval_123034 chr5 28915596 28915805 + 0 NA intron (ENSMUSG00000097726.7, intron 5 of 6) antisense-intron (ENSMUSG00000097726.7, intron 5 of 6) -280887 ENSMUSG00000029130.12 ENSMUSG00000029130 ENSMUST00000163050 Rnf32 protein_coding Interval_43913 chr13 38002354 38003011 + 0 NA Intergenic Intergenic -8599 ENSMUSG00000021427.10 ENSMUSG00000021427 ENSMUST00000224399 Ssr1 protein_coding Interval_114209 chr4 67501971 67502551 + 0 NA Intergenic Intergenic 16671 ENSMUSG00000080815.1 ENSMUSG00000080815 ENSMUST00000117940 Hmgb1-rs18 processed_pseudogene Interval_150809 chr7 114851052 114851297 + 0 NA TTS (ENSMUSG00000048782.15) protein_coding-TTS (ENSMUSG00000048782.15) 3397 ENSMUSG00000108683.1 ENSMUSG00000108683 ENSMUST00000206842 Gm45017 lincRNA Interval_42881 chr13 21021781 21022389 + 0 NA intron (ENSMUSG00000021322.8, intron 2 of 3) protein_coding-intron (ENSMUSG00000021322.8, intron 20 of 20) 52862 ENSMUSG00000042869.2 ENSMUSG00000042869 ENSMUST00000058168 Olfr1370 protein_coding Interval_55967 chr14 103469542 103472223 + 0 NA TTS (ENSMUSG00000115762.1) lincRNA-TTS (ENSMUSG00000115762.1) 6831 ENSMUSG00000115762.1 ENSMUSG00000115762 ENSMUST00000228400 Gm34907 lincRNA Interval_18746 chr10 89872618 89874129 + 0 NA promoter-TSS (ENSMUSG00000058589.14) protein_coding-promoter-TSS (ENSMUSG00000058589.14) -136 ENSMUSG00000058589.14 ENSMUSG00000058589 ENSMUST00000183024 Anks1b protein_coding Interval_117566 chr4 124700058 124701639 + 0 NA exon (ENSMUSG00000032643.12, exon 1 of 6) protein_coding-exon (ENSMUSG00000032643.12, exon 1 of 6) 129 ENSMUSG00000032643.12 ENSMUSG00000032643 ENSMUST00000038684 Fhl3 protein_coding Interval_57102 chr15 6431860 6432753 + 0 NA intron (ENSMUSG00000022150.16, intron 6 of 9) protein_coding-intron (ENSMUSG00000022150.16, intron 10 of 13) 10066 ENSMUSG00000022150.16 ENSMUSG00000022150 ENSMUST00000161558 Dab2 protein_coding Interval_34374 chr12 3680163 3680524 + 0 NA intron (ENSMUSG00000071454.13, intron 8 of 8) protein_coding-intron (ENSMUSG00000071454.13, intron 8 of 18) -18835 ENSMUSG00000077830.1 ENSMUSG00000077830 ENSMUST00000104640 Gm26050 miRNA Interval_62807 chr15 97131490 97132315 + 0 NA Intergenic Intergenic 35342 ENSMUSG00000116295.1 ENSMUSG00000116295 ENSMUST00000229491 Gm32885 lincRNA Interval_83067 chr18 81001892 81002888 + 0 NA Intergenic Intergenic -5007 ENSMUSG00000118235.1 ENSMUSG00000118235 ENSMUST00000236431 Gm7503 processed_pseudogene Interval_120003 chr4 141322091 141323270 + 0 NA exon (ENSMUSG00000006445.3, exon 14 of 17) protein_coding-exon (ENSMUSG00000006445.3, exon 14 of 17) 5767 ENSMUSG00000006445.3 ENSMUSG00000006445 ENSMUST00000149002 Epha2 protein_coding Interval_150409 chr7 110208256 110209055 + 0 NA Intergenic Intergenic -13077 ENSMUSG00000031015.8 ENSMUSG00000031015 ENSMUST00000210513 Swap70 protein_coding Interval_140856 chr6 122377716 122378909 + 0 NA intron (ENSMUSG00000118448.1, intron 19 of 21) unitary_pseudogene-intron (ENSMUSG00000118448.1, intron 19 of 21) -13067 ENSMUSG00000040657.3 ENSMUSG00000040657 ENSMUST00000043553 1700063H04Rik lincRNA Interval_68978 chr16 89895719 89898455 + 0 NA intron (ENSMUSG00000002489.16, intron 4 of 27) protein_coding-intron (ENSMUSG00000002489.16, intron 4 of 27) -101805 ENSMUSG00000002489.16 ENSMUSG00000002489 ENSMUST00000136760 Tiam1 protein_coding Interval_97427 chr2 136107576 136109172 + 0 NA intron (ENSMUSG00000039913.12, intron 4 of 9) protein_coding-intron (ENSMUSG00000039913.12, intron 5 of 10) -28632 ENSMUSG00000085383.1 ENSMUSG00000085383 ENSMUST00000137802 Gm14218 antisense Interval_149131 chr7 94402436 94402726 + 0 NA intron (ENSMUSG00000108532.1, intron 2 of 2) lincRNA-intron (ENSMUSG00000108532.1, intron 2 of 2) -30009 ENSMUSG00000108315.1 ENSMUSG00000108315 ENSMUST00000206678 Gm44601 lincRNA Interval_56608 chr14 120825052 120825993 + 0 NA Intergenic Intergenic -1636 ENSMUSG00000115028.1 ENSMUSG00000115028 ENSMUST00000228417 Gm9391 processed_pseudogene Interval_87088 chr19 46044822 46046694 + 0 NA promoter-TSS (ENSMUSG00000025223.15) protein_coding-promoter-TSS (ENSMUSG00000025223.15) -547 ENSMUSG00000025223.15 ENSMUSG00000025223 ENSMUST00000136203 Ldb1 protein_coding Interval_61308 chr15 80740382 80740597 + 0 NA intron (ENSMUSG00000047888.10, intron 1 of 24) protein_coding-intron (ENSMUSG00000047888.10, intron 1 of 24) 28218 ENSMUSG00000116480.1 ENSMUSG00000116480 ENSMUST00000230620 Gm49512 sense_intronic Interval_43761 chr13 36152865 36153374 + 0 NA intron (ENSMUSG00000021420.13, intron 2 of 7) protein_coding-intron (ENSMUSG00000021420.13, intron 1 of 6) 29929 ENSMUSG00000114371.1 ENSMUSG00000114371 ENSMUST00000224673 Gm48769 processed_pseudogene Interval_131114 chr5 135222983 135223877 + 0 NA intron (ENSMUSG00000002748.7, intron 9 of 18) protein_coding-intron (ENSMUSG00000002748.7, intron 9 of 18) 15442 ENSMUSG00000080473.1 ENSMUSG00000080473 ENSMUST00000116823 Gm25315 miRNA Interval_157827 chr8 74624808 74625007 + 0 NA intron (ENSMUSG00000079011.9, intron 6 of 9) lincRNA-intron (ENSMUSG00000079011.9, intron 6 of 9) 209030 ENSMUSG00000079011.9 ENSMUSG00000079011 ENSMUST00000137218 Gm11033 lincRNA Interval_14093 chr10 26911182 26911470 + 0 NA intron (ENSMUSG00000039031.16, intron 8 of 10) protein_coding-intron (ENSMUSG00000039031.16, intron 12 of 14) -38414 ENSMUSG00000112751.1 ENSMUSG00000112751 ENSMUST00000220276 Gm48084 antisense Interval_147752 chr7 73374923 73376814 + 0 NA promoter-TSS (ENSMUSG00000097756.2) antisense-promoter-TSS (ENSMUSG00000097756.2) -94 ENSMUSG00000097756.2 ENSMUSG00000097756 ENSMUST00000206959 A730056A06Rik antisense Interval_128677 chr5 114667297 114668222 + 0 NA Intergenic Intergenic -22860 ENSMUSG00000014158.12 ENSMUSG00000014158 ENSMUST00000212469 Trpv4 protein_coding Interval_115304 chr4 95627460 95627784 + 0 NA intron (ENSMUSG00000028573.18, intron 4 of 5) protein_coding-intron (ENSMUSG00000028573.18, intron 5 of 10) -65463 ENSMUSG00000093492.1 ENSMUSG00000093492 ENSMUST00000177219 Gm20651 processed_pseudogene Interval_74806 chr17 56651700 56652398 + 0 NA intron (ENSMUSG00000040828.10, intron 1 of 11) protein_coding-intron (ENSMUSG00000040828.10, intron 10 of 21) 267 ENSMUSG00000040828.10 ENSMUSG00000040828 ENSMUST00000233947 Catsperd protein_coding Interval_88536 chr2 5906688 5907028 + 0 NA intron (ENSMUSG00000025815.13, intron 2 of 2) protein_coding-intron (ENSMUSG00000025815.13, intron 12 of 17) 4978 ENSMUSG00000025815.13 ENSMUSG00000025815 ENSMUST00000151649 Dhtkd1 protein_coding Interval_104760 chr3 71193561 71194056 + 0 NA Intergenic Intergenic 207739 ENSMUSG00000102666.1 ENSMUSG00000102666 ENSMUST00000193033 Gm8599 processed_pseudogene Interval_63284 chr15 100092684 100092905 + 0 NA intron (ENSMUSG00000023026.16, intron 1 of 37) protein_coding-intron (ENSMUSG00000023026.16, intron 1 of 37) -1037 ENSMUSG00000116021.1 ENSMUSG00000116021 ENSMUST00000230449 Gm49474 TEC Interval_139892 chr6 112472054 112472809 + 0 NA exon (ENSMUSG00000062694.7, exon 2 of 2) protein_coding-exon (ENSMUSG00000062694.7, exon 2 of 2) 12926 ENSMUSG00000062694.7 ENSMUSG00000062694 ENSMUST00000075477 Cav3 protein_coding Interval_125193 chr5 65255525 65255744 + 0 NA promoter-TSS (ENSMUSG00000037890.13) protein_coding-promoter-TSS (ENSMUSG00000037890.13) 18033 ENSMUSG00000029191.16 ENSMUSG00000029191 ENSMUST00000203644 Rfc1 protein_coding Interval_96009 chr2 119145080 119146111 + 0 NA TTS (ENSMUSG00000070730.11) protein_coding-TTS (ENSMUSG00000070730.11) 1841 ENSMUSG00000070730.11 ENSMUSG00000070730 ENSMUST00000139519 Rmdn3 protein_coding Interval_94146 chr2 84669959 84671785 + 0 NA promoter-TSS (ENSMUSG00000076437.10) protein_coding-promoter-TSS (ENSMUSG00000076437.10) -218 ENSMUSG00000076437.10 ENSMUSG00000076437 ENSMUST00000189988 Selenoh protein_coding Interval_68381 chr16 75277061 75277975 + 0 NA Intergenic Intergenic 121756 ENSMUSG00000116867.1 ENSMUSG00000116867 ENSMUST00000232003 Gm49677 TEC Interval_59138 chr15 44666555 44668239 + 0 NA Intergenic Intergenic 47968 ENSMUSG00000022339.9 ENSMUSG00000022339 ENSMUST00000022964 Ebag9 protein_coding Interval_14210 chr10 28895253 28895594 + 0 NA intron (ENSMUSG00000090126.1, intron 1 of 1) transcribed_processed_pseudogene-intron (ENSMUSG00000090126.1, intron 1 of 1) -25074 ENSMUSG00000111991.1 ENSMUSG00000111991 ENSMUST00000219942 Gm47835 unprocessed_pseudogene Interval_156220 chr8 46202104 46202831 + 0 NA Intergenic Intergenic 8563 ENSMUSG00000031633.4 ENSMUSG00000031633 ENSMUST00000155986 Slc25a4 protein_coding Interval_127140 chr5 100547976 100548276 + 0 NA TTS (ENSMUSG00000035297.14) protein_coding-TTS (ENSMUSG00000035297.14) 24066 ENSMUSG00000029322.12 ENSMUSG00000029322 ENSMUST00000144595 Plac8 protein_coding Interval_101770 chr3 9485773 9486857 + 0 NA intron (ENSMUSG00000040209.12, intron 1 of 9) protein_coding-intron (ENSMUSG00000040209.12, intron 2 of 8) -9853 ENSMUSG00000103485.1 ENSMUSG00000103485 ENSMUST00000192900 Gm38001 TEC Interval_164780 chr9 41765588 41766826 + 0 NA Intergenic Intergenic -28809 ENSMUSG00000110862.1 ENSMUSG00000110862 ENSMUST00000214447 Gm35835 lincRNA Interval_154637 chr8 22192141 22193646 + 0 NA promoter-TSS (ENSMUSG00000031479.9) protein_coding-promoter-TSS (ENSMUSG00000031479.9) -22724 ENSMUSG00000037725.8 ENSMUSG00000037725 ENSMUST00000211045 Ckap2 protein_coding Interval_27359 chr11 66937787 66938426 + 0 NA intron (ENSMUSG00000072834.4, intron 3 of 3) antisense-intron (ENSMUSG00000072834.4, intron 3 of 3) 8980 ENSMUSG00000072834.4 ENSMUSG00000072834 ENSMUST00000126999 Gm12298 antisense Interval_14931 chr10 41253077 41253364 + 0 NA intron (ENSMUSG00000038417.4, intron 14 of 22) protein_coding-intron (ENSMUSG00000038417.4, intron 14 of 22) 37175 ENSMUSG00000093933.1 ENSMUSG00000093933 ENSMUST00000104332 Gm25526 snoRNA Interval_74034 chr17 46178524 46179418 + 0 NA intron (ENSMUSG00000023953.9, intron 8 of 9) protein_coding-intron (ENSMUSG00000023953.9, intron 9 of 10) 16518 ENSMUSG00000023953.9 ENSMUSG00000023953 ENSMUST00000233924 Polh protein_coding Interval_23030 chr11 19093548 19093810 + 0 NA Intergenic Intergenic 23755 ENSMUSG00000102585.1 ENSMUSG00000102585 ENSMUST00000193150 Gm37439 TEC Interval_99580 chr2 163343542 163343903 + 0 NA intron (ENSMUSG00000017817.11, intron 3 of 6) protein_coding-intron (ENSMUSG00000017817.11, intron 2 of 5) 54271 ENSMUSG00000017817.11 ENSMUSG00000017817 ENSMUST00000109425 Jph2 protein_coding Interval_147484 chr7 67665660 67667275 + 0 NA promoter-TSS (ENSMUSG00000030555.16) protein_coding-promoter-TSS (ENSMUSG00000030555.16) -3585 ENSMUSG00000030555.16 ENSMUSG00000030555 ENSMUST00000154697 Ttc23 protein_coding Interval_113361 chr4 53835184 53835384 + 0 NA intron (ENSMUSG00000028420.13, intron 1 of 2) protein_coding-intron (ENSMUSG00000028420.13, intron 1 of 5) 9227 ENSMUSG00000028420.13 ENSMUSG00000028420 ENSMUST00000144167 Tmem38b protein_coding Interval_171987 chr9 123215092 123216403 + 0 NA intron (ENSMUSG00000035498.10, intron 1 of 4) protein_coding-intron (ENSMUSG00000035498.10, intron 1 of 8) -37641 ENSMUSG00000035498.10 ENSMUSG00000035498 ENSMUST00000140915 Cdcp1 protein_coding Interval_50014 chr13 119725202 119725420 + 0 NA exon (ENSMUSG00000095930.1, exon 2 of 2) protein_coding-exon (ENSMUSG00000095930.1, exon 2 of 2) 13083 ENSMUSG00000095930.1 ENSMUSG00000095930 ENSMUST00000178973 Nim1k protein_coding Interval_27052 chr11 62574949 62576501 + 0 NA promoter-TSS (ENSMUSG00000018507.16) protein_coding-promoter-TSS (ENSMUSG00000018507.16) -5542 ENSMUSG00000018507.16 ENSMUSG00000018507 ENSMUST00000153486 Trpv2 protein_coding Interval_125011 chr5 63836969 63837609 + 0 NA intron (ENSMUSG00000060512.7, intron 1 of 4) protein_coding-intron (ENSMUSG00000060512.7, intron 1 of 3) 36827 ENSMUSG00000090061.9 ENSMUSG00000090061 ENSMUST00000162757 Nwd2 protein_coding Interval_34062 chr11 120261222 120262934 + 0 NA intron (ENSMUSG00000039741.15, intron 3 of 27) protein_coding-intron (ENSMUSG00000039741.15, intron 3 of 27) -12409 ENSMUSG00000104657.1 ENSMUSG00000104657 ENSMUST00000197891 Gm47297 miRNA Interval_59562 chr15 55287703 55289166 + 0 NA Intergenic Intergenic -25831 ENSMUSG00000095792.1 ENSMUSG00000095792 ENSMUST00000179457 Gm26296 snRNA Interval_39223 chr12 86017239 86017473 + 0 NA intron (ENSMUSG00000012609.19, intron 13 of 15) protein_coding-intron (ENSMUSG00000012609.19, intron 31 of 33) -38335 ENSMUSG00000097902.2 ENSMUSG00000097902 ENSMUST00000181727 Gm26531 antisense Interval_116106 chr4 107724113 107724308 + 0 NA intron (ENSMUSG00000085549.7, intron 3 of 3) lincRNA-intron (ENSMUSG00000085549.7, intron 3 of 3) -26256 ENSMUSG00000094267.1 ENSMUSG00000094267 ENSMUST00000179154 Gm25123 miRNA Interval_118667 chr4 133084547 133086191 + 0 NA Intergenic Intergenic -45171 ENSMUSG00000028868.13 ENSMUSG00000028868 ENSMUST00000136637 Wasf2 protein_coding Interval_8747 chr1 150372699 150373121 + 0 NA intron (ENSMUSG00000006010.14, intron 11 of 13) protein_coding-intron (ENSMUSG00000006010.14, intron 10 of 12) 19838 ENSMUSG00000006010.14 ENSMUSG00000006010 ENSMUST00000140112 Odr4 protein_coding Interval_56704 chr14 121475575 121475918 + 0 NA intron (ENSMUSG00000025557.10, intron 13 of 15) protein_coding-intron (ENSMUSG00000025557.10, intron 15 of 22) 16723 ENSMUSG00000025557.10 ENSMUSG00000025557 ENSMUST00000227372 Slc15a1 protein_coding Interval_12354 chr1 192427159 192427678 + 0 NA intron (ENSMUSG00000058248.12, intron 9 of 10) protein_coding-intron (ENSMUSG00000058248.12, intron 9 of 10) -7322 ENSMUSG00000058248.12 ENSMUSG00000058248 ENSMUST00000151152 Kcnh1 protein_coding Interval_39944 chr12 99998967 100000371 + 0 NA intron (ENSMUSG00000045404.16, intron 2 of 2) protein_coding-intron (ENSMUSG00000045404.16, intron 2 of 2) -16817 ENSMUSG00000093352.1 ENSMUSG00000093352 ENSMUST00000175611 Gm23291 miRNA Interval_45189 chr13 53095370 53095672 + 0 NA Intergenic Intergenic 66603 ENSMUSG00000112952.1 ENSMUSG00000112952 ENSMUST00000222184 Gm48336 lincRNA Interval_116674 chr4 116603654 116603828 + 0 NA intron (ENSMUSG00000028693.15, intron 5 of 6) protein_coding-intron (ENSMUSG00000028693.15, intron 12 of 15) 2507 ENSMUSG00000028693.15 ENSMUSG00000028693 ENSMUST00000148436 Nasp protein_coding Interval_7668 chr1 132928143 132929150 + 0 NA intron (ENSMUSG00000026443.3, intron 1 of 1) protein_coding-intron (ENSMUSG00000026443.3, intron 1 of 1) -4902 ENSMUSG00000106377.1 ENSMUSG00000106377 ENSMUST00000196792 Gm44300 miRNA Interval_3779 chr1 63051023 63051206 + 0 NA exon (ENSMUSG00000040865.15, exon 11 of 11) protein_coding-exon (ENSMUSG00000040865.15, exon 11 of 11) 12447 ENSMUSG00000040865.15 ENSMUSG00000040865 ENSMUST00000153992 Ino80d protein_coding Interval_167256 chr9 66733176 66733485 + 0 NA intron (ENSMUSG00000032373.15, intron 2 of 7) protein_coding-intron (ENSMUSG00000032373.15, intron 2 of 10) 19601 ENSMUSG00000032373.15 ENSMUSG00000032373 ENSMUST00000134829 Car12 protein_coding Interval_117324 chr4 123000829 123001736 + 0 NA TTS (ENSMUSG00000028654.13) protein_coding-TTS (ENSMUSG00000028654.13) 1943 ENSMUSG00000028654.13 ENSMUSG00000028654 ENSMUST00000147259 Mycl protein_coding Interval_40150 chr12 101975103 101976827 + 0 NA promoter-TSS (ENSMUSG00000041781.9) protein_coding-promoter-TSS (ENSMUSG00000041781.9) -23 ENSMUSG00000041781.9 ENSMUSG00000041781 ENSMUST00000047357 Cpsf2 protein_coding Interval_67992 chr16 62818606 62818833 + 0 NA intron (ENSMUSG00000047854.5, intron 1 of 1) protein_coding-intron (ENSMUSG00000047854.5, intron 1 of 1) 4043 ENSMUSG00000047854.5 ENSMUSG00000047854 ENSMUST00000055557 Stx19 protein_coding Interval_69897 chr16 97995967 97996477 + 0 NA intron (ENSMUSG00000097874.3, intron 1 of 1) antisense-intron (ENSMUSG00000097874.3, intron 1 of 1) 746 ENSMUSG00000097874.3 ENSMUSG00000097874 ENSMUST00000183627 C030010L15Rik antisense Interval_77041 chr17 85930640 85930937 + 0 NA Intergenic Intergenic -2209 ENSMUSG00000117501.1 ENSMUSG00000117501 ENSMUST00000234707 Gm30117 lincRNA Interval_163616 chr9 22556245 22558099 + 0 NA intron (ENSMUSG00000035919.16, intron 2 of 5) protein_coding-intron (ENSMUSG00000035919.16, intron 5 of 21) 44715 ENSMUSG00000035919.16 ENSMUSG00000035919 ENSMUST00000124076 Bbs9 protein_coding Interval_56209 chr14 112903537 112904561 + 0 NA Intergenic Intergenic -53319 ENSMUSG00000115786.1 ENSMUSG00000115786 ENSMUST00000227924 Gm4486 processed_pseudogene Interval_19883 chr10 110903730 110904924 + 0 NA TTS (ENSMUSG00000087718.1) snRNA-TTS (ENSMUSG00000087718.1) 573 ENSMUSG00000087718.1 ENSMUSG00000087718 ENSMUST00000157093 Gm22236 snRNA Interval_172124 chrX 7763676 7766158 + 0 NA exon (ENSMUSG00000000134.17, exon 1 of 7) protein_coding-exon (ENSMUSG00000000134.17, exon 1 of 7) 974 ENSMUSG00000000134.17 ENSMUSG00000000134 ENSMUST00000133456 Tfe3 protein_coding Interval_19501 chr10 100587800 100589482 + 0 NA exon (ENSMUSG00000046567.10, exon 1 of 4) protein_coding-exon (ENSMUSG00000046567.10, exon 1 of 4) 607 ENSMUSG00000046567.10 ENSMUSG00000046567 ENSMUST00000218929 4930430F08Rik protein_coding Interval_117520 chr4 124346655 124347134 + 0 NA Intergenic Intergenic -11213 ENSMUSG00000088933.1 ENSMUSG00000088933 ENSMUST00000158308 Gm22983 snRNA Interval_42321 chr13 12071729 12073308 + 0 NA intron (ENSMUSG00000021313.16, intron 1 of 2) protein_coding-intron (ENSMUSG00000021313.16, intron 1 of 104) -20463 ENSMUSG00000112947.1 ENSMUSG00000112947 ENSMUST00000220599 Gm47493 TEC Interval_124711 chr5 53507299 53507600 + 0 NA intron (ENSMUSG00000039191.12, intron 1 of 6) protein_coding-intron (ENSMUSG00000039191.12, intron 1 of 6) 15282 ENSMUSG00000106807.1 ENSMUSG00000106807 ENSMUST00000200950 Gm10441 antisense Interval_54349 chr14 67860593 67861272 + 0 NA intron (ENSMUSG00000044447.5, intron 3 of 17) protein_coding-intron (ENSMUSG00000044447.5, intron 3 of 51) -1187 ENSMUSG00000098866.1 ENSMUSG00000098866 ENSMUST00000183732 Mir6539 miRNA Interval_81114 chr18 54073856 54075223 + 0 NA Intergenic Intergenic -43231 ENSMUSG00000117769.1 ENSMUSG00000117769 ENSMUST00000237377 Gm8594 processed_pseudogene Interval_90331 chr2 29817575 29818202 + 0 NA TTS (ENSMUSG00000059316.2) protein_coding-TTS (ENSMUSG00000059316.2) -9454 ENSMUSG00000069020.9 ENSMUSG00000069020 ENSMUST00000123021 Urm1 protein_coding Interval_8916 chr1 152117128 152117942 + 0 NA Intergenic Intergenic -11050 ENSMUSG00000102090.1 ENSMUSG00000102090 ENSMUST00000165944 Gm8964 processed_pseudogene Interval_41116 chr12 111274066 111275853 + 0 NA TTS (ENSMUSG00000021278.7) protein_coding-TTS (ENSMUSG00000021278.7) 445 ENSMUSG00000021278.7 ENSMUSG00000021278 ENSMUST00000220551 Amn protein_coding Interval_116357 chr4 110157671 110157919 + 0 NA Intergenic Intergenic 129732 ENSMUSG00000028546.17 ENSMUSG00000028546 ENSMUST00000142722 Elavl4 protein_coding Interval_82998 chr18 80264688 80265758 + 0 NA intron (ENSMUSG00000034006.17, intron 4 of 4) protein_coding-intron (ENSMUSG00000034006.17, intron 3 of 4) 11881 ENSMUSG00000034006.17 ENSMUSG00000034006 ENSMUST00000155039 Slc66a2 protein_coding Interval_133395 chr6 4648990 4649263 + 0 NA Intergenic Intergenic 17999 ENSMUSG00000015189.12 ENSMUSG00000015189 ENSMUST00000204372 Casd1 protein_coding Interval_14712 chr10 39239388 39240522 + 0 NA Intergenic Intergenic -5091 ENSMUSG00000111008.1 ENSMUSG00000111008 ENSMUST00000213973 Gm31562 lincRNA Interval_148439 chr7 81253574 81254329 + 0 NA intron (ENSMUSG00000025584.17, intron 1 of 21) protein_coding-intron (ENSMUSG00000025584.17, intron 1 of 21) -31077 ENSMUSG00000083774.1 ENSMUSG00000083774 ENSMUST00000121753 Gm7180 processed_pseudogene Interval_110299 chr3 156198709 156200497 + 0 NA Intergenic Intergenic -64983 ENSMUSG00000104573.1 ENSMUSG00000104573 ENSMUST00000199214 Gm42886 processed_pseudogene Interval_105923 chr3 90114232 90115414 + 0 NA intron (ENSMUSG00000027939.11, intron 2 of 39) protein_coding-intron (ENSMUSG00000027939.11, intron 2 of 39) 10689 ENSMUSG00000027939.11 ENSMUSG00000027939 ENSMUST00000200410 Nup210l protein_coding Interval_7779 chr1 133626304 133626718 + 0 NA TTS (ENSMUSG00000102976.6) protein_coding-TTS (ENSMUSG00000102976.6) 12659 ENSMUSG00000102976.6 ENSMUSG00000102976 ENSMUST00000192775 Zc3h11a protein_coding Interval_27037 chr11 62493815 62496721 + 0 NA intron (ENSMUSG00000086310.1, intron 1 of 1) protein_coding-intron (ENSMUSG00000014245.8, intron 2 of 6) 12471 ENSMUSG00000086310.1 ENSMUSG00000086310 ENSMUST00000153718 Gm12278 antisense Interval_161758 chr8 122576426 122577541 + 0 NA promoter-TSS (ENSMUSG00000006589.8) protein_coding-promoter-TSS (ENSMUSG00000006589.8) -1494 ENSMUSG00000006589.8 ENSMUSG00000006589 ENSMUST00000211810 Aprt protein_coding Interval_136400 chr6 54125263 54126060 + 0 NA intron (ENSMUSG00000004633.17, intron 1 of 5) protein_coding-intron (ENSMUSG00000004633.17, intron 1 of 12) 25276 ENSMUSG00000087670.1 ENSMUSG00000087670 ENSMUST00000138767 9530036M11Rik antisense Interval_5494 chr1 89251402 89251687 + 0 NA Intergenic Intergenic 5437 ENSMUSG00000102083.1 ENSMUSG00000102083 ENSMUST00000191231 Gm5259 processed_pseudogene Interval_10639 chr1 172392247 172392998 + 0 NA Intergenic Intergenic -1633 ENSMUSG00000102278.1 ENSMUSG00000102278 ENSMUST00000193540 Gm37145 TEC Interval_92108 chr2 53238737 53238982 + 0 NA Intergenic Intergenic 35982 ENSMUSG00000088928.1 ENSMUSG00000088928 ENSMUST00000158303 Gm25898 snRNA Interval_46590 chr13 67420287 67423140 + 0 NA promoter-TSS (ENSMUSG00000055560.8) protein_coding-promoter-TSS (ENSMUSG00000055560.8) -305 ENSMUSG00000055560.8 ENSMUSG00000055560 ENSMUST00000224496 Zfp459 protein_coding Interval_37155 chr12 59045951 59046693 + 0 NA TTS (ENSMUSG00000020993.9) protein_coding-TTS (ENSMUSG00000020993.9) 5987 ENSMUSG00000065232.1 ENSMUSG00000065232 ENSMUST00000083298 Gm22973 snRNA Interval_7112 chr1 126093066 126093280 + 0 NA intron (ENSMUSG00000049690.15, intron 8 of 14) protein_coding-intron (ENSMUSG00000049690.15, intron 7 of 12) -21712 ENSMUSG00000102723.1 ENSMUSG00000102723 ENSMUST00000194647 Gm37936 TEC Interval_130463 chr5 127862500 127862751 + 0 NA intron (ENSMUSG00000034310.8, intron 5 of 8) protein_coding-intron (ENSMUSG00000034310.8, intron 5 of 8) -14708 ENSMUSG00000061331.5 ENSMUSG00000061331 ENSMUST00000109542 Gm17132 unprocessed_pseudogene Interval_26098 chr11 54160127 54160428 + 0 NA TTS (ENSMUSG00000036045.6) processed_pseudogene-TTS (ENSMUSG00000036045.6) 1351 ENSMUSG00000036045.6 ENSMUSG00000036045 ENSMUST00000125096 Gm12221 processed_pseudogene Interval_82044 chr18 67332253 67333147 + 0 NA intron (ENSMUSG00000046415.11, intron 1 of 3) processed_transcript-intron (ENSMUSG00000046415.11, intron 1 of 4) -10904 ENSMUSG00000024526.9 ENSMUSG00000024526 ENSMUST00000025404 Cidea protein_coding Interval_71437 chr17 23744283 23746616 + 0 NA intron (ENSMUSG00000040680.9, intron 1 of 9) protein_coding-intron (ENSMUSG00000040680.9, intron 1 of 9) 384 ENSMUSG00000040680.9 ENSMUSG00000040680 ENSMUST00000046525 Kremen2 protein_coding Interval_172522 chrX 23823458 23823863 + 0 NA Intergenic Intergenic 32374 ENSMUSG00000081812.1 ENSMUSG00000081812 ENSMUST00000121708 Gm4789 processed_pseudogene Interval_93587 chr2 74679325 74680055 + 0 NA exon (ENSMUSG00000042499.13, exon 1 of 2) protein_coding-exon (ENSMUSG00000042499.13, exon 1 of 2) -2633 ENSMUSG00000042499.13 ENSMUSG00000042499 ENSMUST00000142312 Hoxd11 protein_coding Interval_123375 chr5 31997806 31998032 + 0 NA intron (ENSMUSG00000052139.18, intron 5 of 6) protein_coding-intron (ENSMUSG00000052139.18, intron 9 of 13) 12944 ENSMUSG00000106894.1 ENSMUSG00000106894 ENSMUST00000201542 Gm17130 antisense Interval_45048 chr13 51729830 51730543 + 0 NA intron (ENSMUSG00000021451.16, intron 3 of 3) protein_coding-intron (ENSMUSG00000021451.16, intron 2 of 15) -35108 ENSMUSG00000092648.1 ENSMUSG00000092648 ENSMUST00000174907 Gm23566 miRNA Interval_158253 chr8 80568566 80568793 + 0 NA Intergenic Intergenic -42401 ENSMUSG00000042353.9 ENSMUSG00000042353 ENSMUST00000039695 Frem3 protein_coding Interval_96003 chr2 119108556 119108976 + 0 NA Intergenic Intergenic -22752 ENSMUSG00000027323.10 ENSMUSG00000027323 ENSMUST00000143934 Rad51 protein_coding Interval_97662 chr2 142366551 142366975 + 0 NA intron (ENSMUSG00000068205.14, intron 11 of 13) protein_coding-intron (ENSMUSG00000068205.14, intron 16 of 17) -15225 ENSMUSG00000089318.1 ENSMUSG00000089318 ENSMUST00000158693 Gm23179 misc_RNA Interval_62986 chr15 98507276 98507686 + 0 NA Intergenic Intergenic 8076 ENSMUSG00000108805.1 ENSMUSG00000108805 ENSMUST00000205676 Olfr278-ps1 unprocessed_pseudogene Interval_81335 chr18 58218660 58219122 + 0 NA Intergenic Intergenic -8965 ENSMUSG00000024598.9 ENSMUSG00000024598 ENSMUST00000235779 Fbn2 protein_coding Interval_78379 chr18 12322239 12322935 + 0 NA Intergenic Intergenic 35183 ENSMUSG00000082051.1 ENSMUSG00000082051 ENSMUST00000119574 Gm16072 processed_pseudogene Interval_99386 chr2 160507861 160508463 + 0 NA Intergenic Intergenic -75195 ENSMUSG00000078955.3 ENSMUSG00000078955 ENSMUST00000128681 Gm14222 sense_intronic Interval_139155 chr6 96383980 96384981 + 0 NA intron (ENSMUSG00000059187.12, intron 2 of 4) protein_coding-intron (ENSMUSG00000059187.12, intron 1 of 3) 85051 ENSMUSG00000065239.1 ENSMUSG00000065239 ENSMUST00000083305 Gm22971 snRNA Interval_53513 chr14 57980161 57980448 + 0 NA intron (ENSMUSG00000021973.9, intron 1 of 7) protein_coding-intron (ENSMUSG00000021973.9, intron 1 of 11) -19080 ENSMUSG00000097303.2 ENSMUSG00000097303 ENSMUST00000224786 3110083C13Rik bidirectional_promoter_lncRNA Interval_86190 chr19 37666585 37666902 + 0 NA intron (ENSMUSG00000053799.8, intron 21 of 22) protein_coding-intron (ENSMUSG00000053799.8, intron 20 of 21) -18838 ENSMUSG00000062432.4 ENSMUSG00000062432 ENSMUST00000073391 Cyp26c1 protein_coding Interval_1384 chr1 21218335 21219134 + 0 NA promoter-TSS (ENSMUSG00000025933.15) protein_coding-promoter-TSS (ENSMUSG00000025933.15) 159 ENSMUSG00000025933.15 ENSMUSG00000025933 ENSMUST00000027064 Tmem14a protein_coding Interval_63177 chr15 99576235 99576459 + 0 NA Intergenic Intergenic -2708 ENSMUSG00000023013.5 ENSMUSG00000023013 ENSMUST00000023752 Aqp2 protein_coding Interval_25637 chr11 50339850 50341271 + 0 NA Intergenic Intergenic -7068 ENSMUSG00000082545.1 ENSMUSG00000082545 ENSMUST00000120954 Gm12196 processed_pseudogene Interval_52969 chr14 52372808 52373003 + 0 NA TTS (ENSMUSG00000103010.1) TEC-TTS (ENSMUSG00000103010.1) 2621 ENSMUSG00000103010.1 ENSMUSG00000103010 ENSMUST00000192537 Gm37504 TEC Interval_38518 chr12 79815551 79815839 + 0 NA Intergenic Intergenic 109799 ENSMUSG00000112765.1 ENSMUSG00000112765 ENSMUST00000219857 9430078K24Rik lincRNA Interval_174655 chrX 162509946 162510129 + 0 NA intron (ENSMUSG00000040855.15, intron 11 of 17) protein_coding-intron (ENSMUSG00000040855.15, intron 11 of 17) 55575 ENSMUSG00000040855.15 ENSMUSG00000040855 ENSMUST00000155043 Reps2 protein_coding Interval_71173 chr17 20822009 20822335 + 0 NA exon (ENSMUSG00000117148.1, exon 3 of 3) protein_coding-exon (ENSMUSG00000117148.1, exon 3 of 3) 10554 ENSMUSG00000117148.1 ENSMUSG00000117148 ENSMUST00000076759 Vmn1r229 protein_coding Interval_155948 chr8 41232109 41232880 + 0 NA Intergenic Intergenic -7284 ENSMUSG00000031592.10 ENSMUSG00000031592 ENSMUST00000211247 Pcm1 protein_coding Interval_60791 chr15 76797378 76797928 + 0 NA promoter-TSS (ENSMUSG00000090429.3) processed_pseudogene-promoter-TSS (ENSMUSG00000090429.3) -43 ENSMUSG00000090429.3 ENSMUSG00000090429 ENSMUST00000165535 Gm17271 processed_pseudogene Interval_113919 chr4 59849987 59850677 + 0 NA intron (ENSMUSG00000028385.14, intron 1 of 8) protein_coding-intron (ENSMUSG00000028385.14, intron 1 of 8) 16655 ENSMUSG00000080772.1 ENSMUSG00000080772 ENSMUST00000120410 Gm12543 transcribed_processed_pseudogene Interval_156597 chr8 54076049 54078179 + 0 NA promoter-TSS (ENSMUSG00000031520.6) protein_coding-promoter-TSS (ENSMUSG00000031520.6) -665 ENSMUSG00000031520.6 ENSMUSG00000031520 ENSMUST00000210831 Vegfc protein_coding Interval_22885 chr11 17098770 17099618 + 0 NA Intergenic Intergenic -3550 ENSMUSG00000082099.1 ENSMUSG00000082099 ENSMUST00000121971 Gm12013 processed_pseudogene Interval_70799 chr17 14692834 14694347 + 0 NA intron (ENSMUSG00000023885.9, intron 1 of 21) protein_coding-intron (ENSMUSG00000023885.9, intron 1 of 21) -15476 ENSMUSG00000079311.1 ENSMUSG00000079311 ENSMUST00000071282 Gm3222 processed_pseudogene Interval_94281 chr2 87446942 87447672 + 0 NA Intergenic Intergenic -6655 ENSMUSG00000058194.3 ENSMUSG00000058194 ENSMUST00000071355 Olfr1126 protein_coding Interval_82351 chr18 71833788 71834256 + 0 NA intron (ENSMUSG00000060534.16, intron 2 of 28) protein_coding-intron (ENSMUSG00000060534.16, intron 2 of 28) 517019 ENSMUSG00000060534.16 ENSMUSG00000060534 ENSMUST00000126030 Dcc protein_coding Interval_90074 chr2 27739525 27740965 + 0 NA promoter-TSS (ENSMUSG00000015846.15) protein_coding-promoter-TSS (ENSMUSG00000015846.15) 15026 ENSMUSG00000015846.15 ENSMUSG00000015846 ENSMUST00000148756 Rxra protein_coding Interval_97518 chr2 138395054 138395926 + 0 NA intron (ENSMUSG00000062098.11, intron 1 of 3) protein_coding-intron (ENSMUSG00000062098.11, intron 1 of 5) 138828 ENSMUSG00000062098.11 ENSMUSG00000062098 ENSMUST00000075410 Btbd3 protein_coding Interval_68078 chr16 64873479 64874373 + 0 NA Intergenic Intergenic 21224 ENSMUSG00000054604.7 ENSMUSG00000054604 ENSMUST00000136532 Cggbp1 protein_coding Interval_81182 chr18 56000172 56000377 + 0 NA Intergenic Intergenic -12747 ENSMUSG00000088617.1 ENSMUSG00000088617 ENSMUST00000157992 Gm22484 misc_RNA Interval_13234 chr10 13388674 13388907 + 0 NA promoter-TSS (ENSMUSG00000062866.16) protein_coding-promoter-TSS (ENSMUSG00000062866.16) -59 ENSMUSG00000062866.16 ENSMUSG00000062866 ENSMUST00000154265 Phactr2 protein_coding Interval_103107 chr3 35417212 35417464 + 0 NA Intergenic Intergenic 3505 ENSMUSG00000106512.1 ENSMUSG00000106512 ENSMUST00000197222 Gm43078 TEC Interval_95751 chr2 115747629 115748043 + 0 NA intron (ENSMUSG00000040282.13, intron 10 of 10) protein_coding-intron (ENSMUSG00000040282.13, intron 10 of 10) 109111 ENSMUSG00000088606.1 ENSMUSG00000088606 ENSMUST00000157981 Mir1951 miRNA Interval_57024 chr15 4444020 4444362 + 0 NA intron (ENSMUSG00000049148.8, intron 2 of 2) protein_coding-intron (ENSMUSG00000049148.8, intron 1 of 2) 68700 ENSMUSG00000049148.8 ENSMUSG00000049148 ENSMUST00000061925 Plcxd3 protein_coding Interval_129011 chr5 116708230 116708737 + 0 NA intron (ENSMUSG00000106909.1, intron 2 of 2) lincRNA-intron (ENSMUSG00000106909.1, intron 2 of 2) -74919 ENSMUSG00000107369.1 ENSMUSG00000107369 ENSMUST00000201478 Gstm2-ps1 processed_pseudogene Interval_73752 chr17 43231402 43232121 + 0 NA Intergenic Intergenic -38568 ENSMUSG00000041293.5 ENSMUSG00000041293 ENSMUST00000047399 Adgrf1 protein_coding Interval_172762 chrX 48424575 48425641 + 0 NA intron (ENSMUSG00000031103.12, intron 1 of 7) protein_coding-intron (ENSMUSG00000031103.12, intron 1 of 8) 38024 ENSMUSG00000031103.12 ENSMUSG00000031103 ENSMUST00000140486 Elf4 protein_coding Interval_83026 chr18 80583466 80583722 + 0 NA intron (ENSMUSG00000118379.1, intron 2 of 3) lincRNA-intron (ENSMUSG00000118379.1, intron 2 of 3) 22217 ENSMUSG00000118379.1 ENSMUSG00000118379 ENSMUST00000237693 Gm41790 lincRNA Interval_131670 chr5 139180556 139180867 + 0 NA intron (ENSMUSG00000025857.10, intron 10 of 12) protein_coding-intron (ENSMUSG00000025857.10, intron 10 of 12) -30018 ENSMUSG00000086873.1 ENSMUSG00000086873 ENSMUST00000151512 Gm15672 processed_transcript Interval_146153 chr7 44391431 44392644 + 0 NA intron (ENSMUSG00000030731.13, intron 3 of 9) protein_coding-intron (ENSMUSG00000030731.13, intron 4 of 10) 5637 ENSMUSG00000108372.1 ENSMUSG00000108372 ENSMUST00000206723 Gm45124 TEC Interval_45159 chr13 52842898 52843138 + 0 NA intron (ENSMUSG00000021460.17, intron 5 of 9) protein_coding-intron (ENSMUSG00000021460.17, intron 6 of 9) 69928 ENSMUSG00000021460.17 ENSMUSG00000021460 ENSMUST00000151469 Auh protein_coding Interval_135187 chr6 37370841 37371956 + 0 NA intron (ENSMUSG00000038648.5, intron 2 of 11) protein_coding-intron (ENSMUSG00000038648.5, intron 2 of 11) -34863 ENSMUSG00000038648.5 ENSMUSG00000038648 ENSMUST00000128534 Creb3l2 protein_coding Interval_107403 chr3 107323551 107323812 + 0 NA Intergenic Intergenic 9420 ENSMUSG00000048109.10 ENSMUSG00000048109 ENSMUST00000197769 Rbm15 protein_coding Interval_141829 chr6 134773599 134774715 + 0 NA intron (ENSMUSG00000030203.17, intron 1 of 6) protein_coding-intron (ENSMUSG00000030203.17, intron 1 of 6) -13057 ENSMUSG00000030203.17 ENSMUSG00000030203 ENSMUST00000149776 Dusp16 protein_coding Interval_108199 chr3 122447413 122448982 + 0 NA intron (ENSMUSG00000104574.1, intron 1 of 1) protein_coding-intron (ENSMUSG00000028121.8, intron 2 of 11) 10863 ENSMUSG00000104574.1 ENSMUSG00000104574 ENSMUST00000197198 Gm42836 antisense Interval_81690 chr18 63496090 63496574 + 0 NA Intergenic Intergenic -11837 ENSMUSG00000089156.1 ENSMUSG00000089156 ENSMUST00000158531 Gm23581 snRNA Interval_41208 chr12 111787563 111789547 + 0 NA promoter-TSS (ENSMUSG00000021288.19) protein_coding-promoter-TSS (ENSMUSG00000021288.19) 21427 ENSMUSG00000021287.12 ENSMUSG00000021287 ENSMUST00000133679 Xrcc3 protein_coding Interval_90634 chr2 31591786 31592375 + 0 NA intron (ENSMUSG00000026843.15, intron 2 of 4) protein_coding-intron (ENSMUSG00000026843.15, intron 2 of 17) 19266 ENSMUSG00000026843.15 ENSMUSG00000026843 ENSMUST00000132534 Fubp3 protein_coding Interval_156674 chr8 56798183 56798658 + 0 NA Intergenic Intergenic 85371 ENSMUSG00000109760.1 ENSMUSG00000109760 ENSMUST00000210829 Gm6503 processed_pseudogene Interval_115724 chr4 103058782 103058996 + 0 NA intron (ENSMUSG00000035126.19, intron 12 of 14) protein_coding-intron (ENSMUSG00000035126.19, intron 12 of 15) -17272 ENSMUSG00000035126.19 ENSMUSG00000035126 ENSMUST00000148673 Wdr78 protein_coding Interval_3886 chr1 64415699 64416675 + 0 NA Intergenic Intergenic 19853 ENSMUSG00000093228.1 ENSMUSG00000093228 ENSMUST00000175487 Gm25748 miRNA Interval_100622 chr2 170526638 170527470 + 0 NA Intergenic Intergenic -15127 ENSMUSG00000085495.1 ENSMUSG00000085495 ENSMUST00000126086 Gm16796 antisense Interval_92561 chr2 60692323 60694676 + 0 NA TTS (ENSMUSG00000026971.15) protein_coding-TTS (ENSMUSG00000026971.15) -19773 ENSMUSG00000026971.15 ENSMUSG00000026971 ENSMUST00000142696 Itgb6 protein_coding Interval_144961 chr7 29124774 29126914 + 0 NA promoter-TSS (ENSMUSG00000030592.18) protein_coding-promoter-TSS (ENSMUSG00000030592.18) -829 ENSMUSG00000030592.18 ENSMUSG00000030592 ENSMUST00000208922 Ryr1 protein_coding Interval_83539 chr18 88980487 88981600 + 0 NA intron (ENSMUSG00000023066.10, intron 7 of 12) protein_coding-intron (ENSMUSG00000023066.10, intron 7 of 48) 9013 ENSMUSG00000098676.1 ENSMUSG00000098676 ENSMUST00000183668 Mir6359 miRNA Interval_173470 chrX 94234210 94235480 + 0 NA promoter-TSS (ENSMUSG00000043929.16) protein_coding-promoter-TSS (ENSMUSG00000043929.16) -466 ENSMUSG00000043929.16 ENSMUSG00000043929 ENSMUST00000113915 Klhl15 protein_coding Interval_105554 chr3 87665553 87666533 + 0 NA intron (ENSMUSG00000041977.18, intron 1 of 38) protein_coding-intron (ENSMUSG00000041977.18, intron 1 of 39) 47282 ENSMUSG00000041977.18 ENSMUSG00000041977 ENSMUST00000212015 Arhgef11 protein_coding Interval_76228 chr17 78217987 78218978 + 0 NA intron (ENSMUSG00000024074.8, intron 1 of 4) protein_coding-intron (ENSMUSG00000024074.8, intron 1 of 16) -18457 ENSMUSG00000117648.1 ENSMUSG00000117648 ENSMUST00000234450 Gm32282 bidirectional_promoter_lncRNA Interval_83916 chr19 5558888 5561618 + 0 NA promoter-TSS (ENSMUSG00000117861.1) antisense-promoter-TSS (ENSMUSG00000117861.1) -7 ENSMUSG00000117861.1 ENSMUSG00000117861 ENSMUST00000236036 1810058N15Rik antisense Interval_131179 chr5 135632480 135633170 + 0 NA exon (ENSMUSG00000039917.10, exon 1 of 4) protein_coding-exon (ENSMUSG00000039917.10, exon 1 of 4) -2277 ENSMUSG00000039917.10 ENSMUSG00000039917 ENSMUST00000084599 Rhbdd2 protein_coding Interval_5964 chr1 93577123 93578014 + 0 NA intron (ENSMUSG00000034066.13, intron 11 of 12) protein_coding-intron (ENSMUSG00000034066.13, intron 11 of 26) 45753 ENSMUSG00000103854.1 ENSMUSG00000103854 ENSMUST00000194919 Gm37250 TEC Interval_20435 chr10 117606847 117608392 + 0 NA Intergenic Intergenic -6786 ENSMUSG00000112476.1 ENSMUSG00000112476 ENSMUST00000217828 Gm32365 lincRNA Interval_73941 chr17 45595065 45596338 + 0 NA promoter-TSS (ENSMUSG00000023942.15) protein_coding-promoter-TSS (ENSMUSG00000023942.15) -199 ENSMUSG00000023942.15 ENSMUSG00000023942 ENSMUST00000168274 Slc29a1 protein_coding Interval_55674 chr14 98843823 98844014 + 0 NA Intergenic Intergenic 77027 ENSMUSG00000115242.1 ENSMUSG00000115242 ENSMUST00000226462 Gm49018 lincRNA Interval_117277 chr4 121214388 121216437 + 0 NA promoter-TSS (ENSMUSG00000049878.13) protein_coding-promoter-TSS (ENSMUSG00000049878.13) -328 ENSMUSG00000049878.13 ENSMUSG00000049878 ENSMUST00000222814 Rlf protein_coding Interval_23132 chr11 20096414 20097587 + 0 NA intron (ENSMUSG00000020152.7, intron 2 of 5) protein_coding-intron (ENSMUSG00000020152.7, intron 2 of 8) 15909 ENSMUSG00000020152.7 ENSMUSG00000020152 ENSMUST00000134779 Actr2 protein_coding Interval_3900 chr1 64623245 64624413 + 0 NA intron (ENSMUSG00000101832.1, intron 1 of 3) lincRNA-intron (ENSMUSG00000101832.1, intron 1 of 3) 6045 ENSMUSG00000101832.1 ENSMUSG00000101832 ENSMUST00000186895 Gm28982 lincRNA Interval_51029 chr14 21669749 21670738 + 0 NA exon (ENSMUSG00000021767.19, exon 17 of 17) protein_coding-exon (ENSMUSG00000021767.19, exon 17 of 17) 32859 ENSMUSG00000063821.6 ENSMUSG00000063821 ENSMUST00000224735 Dupd1 protein_coding Interval_44989 chr13 51166843 51167230 + 0 NA Intergenic Intergenic -4023 ENSMUSG00000021396.5 ENSMUSG00000021396 ENSMUST00000221339 Nxnl2 protein_coding Interval_32935 chr11 113221572 113221850 + 0 NA Intergenic Intergenic -12042 ENSMUSG00000085421.1 ENSMUSG00000085421 ENSMUST00000130373 4732490B19Rik lincRNA Interval_149826 chr7 101836327 101838865 + 0 NA promoter-TSS (ENSMUSG00000032737.13) protein_coding-promoter-TSS (ENSMUSG00000032737.13) -286 ENSMUSG00000073985.2 ENSMUSG00000073985 ENSMUST00000211793 Gm10602 antisense Interval_139596 chr6 102141967 102142190 + 0 NA Intergenic Intergenic 24123 ENSMUSG00000030075.10 ENSMUSG00000030075 ENSMUST00000032159 Cntn3 protein_coding Interval_45377 chr13 54748968 54750134 + 0 NA intron (ENSMUSG00000069227.4, intron 1 of 2) protein_coding-intron (ENSMUSG00000069227.4, intron 1 of 2) 323 ENSMUSG00000069227.4 ENSMUSG00000069227 ENSMUST00000099506 Gprin1 protein_coding Interval_91674 chr2 47031484 47031838 + 0 NA Intergenic Intergenic -424578 ENSMUSG00000089144.1 ENSMUSG00000089144 ENSMUST00000158519 Gm25264 snoRNA Interval_14814 chr10 40221440 40222750 + 0 NA exon (ENSMUSG00000102632.1, exon 1 of 1) TEC-exon (ENSMUSG00000102632.1, exon 1 of 1) 712 ENSMUSG00000102632.1 ENSMUSG00000102632 ENSMUST00000191714 Gm37786 TEC Interval_43315 chr13 29015829 29016723 + 0 NA promoter-TSS (ENSMUSG00000086363.7) lincRNA-promoter-TSS (ENSMUSG00000086363.7) 1877 ENSMUSG00000086363.7 ENSMUSG00000086363 ENSMUST00000145801 A330102I10Rik lincRNA Interval_101537 chr3 4485807 4486093 + 0 NA Intergenic Intergenic -18881 ENSMUSG00000104073.1 ENSMUSG00000104073 ENSMUST00000195773 Gm37029 processed_pseudogene Interval_99280 chr2 158624577 158625578 + 0 NA exon (ENSMUSG00000037761.16, exon 1 of 9) protein_coding-exon (ENSMUSG00000037761.16, exon 1 of 9) 189 ENSMUSG00000037761.16 ENSMUSG00000037761 ENSMUST00000183586 Actr5 protein_coding Interval_94385 chr2 90667321 90667634 + 0 NA Intergenic Intergenic -17694 ENSMUSG00000051329.13 ENSMUSG00000051329 ENSMUST00000126503 Nup160 protein_coding Interval_14832 chr10 40362732 40363600 + 0 NA intron (ENSMUSG00000038481.13, intron 1 of 11) protein_coding-intron (ENSMUSG00000038481.13, intron 1 of 12) -13063 ENSMUSG00000038491.9 ENSMUSG00000038491 ENSMUST00000044774 Cdk19os antisense Interval_28705 chr11 77837994 77838261 + 0 NA promoter-TSS (ENSMUSG00000000631.20) protein_coding-promoter-TSS (ENSMUSG00000000631.20) 36777 ENSMUSG00000000631.20 ENSMUSG00000000631 ENSMUST00000142571 Myo18a protein_coding Interval_8959 chr1 152739485 152739904 + 0 NA intron (ENSMUSG00000099868.1, intron 1 of 1) protein_coding-intron (ENSMUSG00000026482.13, intron 1 of 17) -9135 ENSMUSG00000080950.1 ENSMUSG00000080950 ENSMUST00000119836 Gm7278 processed_pseudogene Interval_2542 chr1 40062859 40063879 + 0 NA Intergenic Intergenic -13001 ENSMUSG00000102985.1 ENSMUSG00000102985 ENSMUST00000193054 4930456G14Rik TEC Interval_86385 chr19 39815846 39816777 + 0 NA Intergenic Intergenic -3497 ENSMUSG00000025004.16 ENSMUSG00000025004 ENSMUST00000162507 Cyp2c40 protein_coding Interval_63318 chr15 100280562 100281865 + 0 NA intron (ENSMUSG00000045631.10, intron 1 of 2) protein_coding-intron (ENSMUSG00000045631.10, intron 1 of 4) 372 ENSMUSG00000045631.10 ENSMUSG00000045631 ENSMUST00000230901 Tmprss12 protein_coding Interval_135939 chr6 48932561 48932802 + 0 NA exon (ENSMUSG00000029813.8, exon 2 of 4) protein_coding-exon (ENSMUSG00000029813.8, exon 2 of 4) -2113 ENSMUSG00000089335.1 ENSMUSG00000089335 ENSMUST00000158710 Gm24348 snoRNA Interval_108600 chr3 129474347 129475431 + 0 NA Intergenic Intergenic 12917 ENSMUSG00000106258.1 ENSMUSG00000106258 ENSMUST00000198361 Rpl7a-ps7 processed_pseudogene Interval_130899 chr5 133752605 133752822 + 0 NA Intergenic Intergenic 89806 ENSMUSG00000106067.1 ENSMUSG00000106067 ENSMUST00000198842 Gm7902 processed_pseudogene Interval_43427 chr13 30708854 30709111 + 0 NA TTS (ENSMUSG00000069255.13) protein_coding-TTS (ENSMUSG00000069255.13) -22795 ENSMUSG00000081905.1 ENSMUSG00000081905 ENSMUST00000120583 Gm11370 processed_pseudogene Interval_84067 chr19 7031492 7031758 + 0 NA intron (ENSMUSG00000024966.9, intron 5 of 13) protein_coding-intron (ENSMUSG00000024966.9, intron 5 of 13) 8342 ENSMUSG00000024966.9 ENSMUSG00000024966 ENSMUST00000025918 Stip1 protein_coding Interval_50050 chr13 120220724 120221482 + 0 NA Intergenic Intergenic -5156 ENSMUSG00000094027.2 ENSMUSG00000094027 ENSMUST00000177561 Gm21762 protein_coding Interval_167530 chr9 70266569 70266986 + 0 NA intron (ENSMUSG00000032220.10, intron 1 of 17) protein_coding-intron (ENSMUSG00000032220.10, intron 1 of 27) 59427 ENSMUSG00000032220.10 ENSMUSG00000032220 ENSMUST00000034745 Myo1e protein_coding Interval_137997 chr6 84057301 84057836 + 0 NA intron (ENSMUSG00000033788.15, intron 3 of 55) protein_coding-intron (ENSMUSG00000033788.15, intron 3 of 54) 25980 ENSMUSG00000108142.1 ENSMUSG00000108142 ENSMUST00000203282 Gm7498 processed_pseudogene Interval_108234 chr3 122713489 122714357 + 0 NA Intergenic Intergenic -15647 ENSMUSG00000053965.10 ENSMUSG00000053965 ENSMUST00000199253 Pde5a protein_coding Interval_29992 chr11 88582171 88585373 + 0 NA intron (ENSMUSG00000069769.13, intron 1 of 5) protein_coding-intron (ENSMUSG00000069769.13, intron 6 of 13) 6375 ENSMUSG00000069769.13 ENSMUSG00000069769 ENSMUST00000126293 Msi2 protein_coding Interval_145680 chr7 37324651 37324871 + 0 NA intron (ENSMUSG00000043456.17, intron 3 of 3) protein_coding-intron (ENSMUSG00000043456.17, intron 3 of 3) 25496 ENSMUSG00000099715.2 ENSMUSG00000099715 ENSMUST00000190250 Gm28077 lincRNA Interval_127014 chr5 99604650 99605112 + 0 NA intron (ENSMUSG00000089809.9, intron 1 of 2) protein_coding-intron (ENSMUSG00000089809.9, intron 1 of 1) 6552 ENSMUSG00000089627.1 ENSMUSG00000089627 ENSMUST00000162286 Gm16228 processed_pseudogene Interval_84012 chr19 6102783 6103149 + 0 NA Intergenic Intergenic -2816 ENSMUSG00000054999.2 ENSMUSG00000054999 ENSMUST00000044451 Naaladl1 protein_coding Interval_105755 chr3 89159024 89160465 + 0 NA intron (ENSMUSG00000028051.10, intron 1 of 3) protein_coding-intron (ENSMUSG00000028051.10, intron 1 of 7) 236 ENSMUSG00000028051.10 ENSMUSG00000028051 ENSMUST00000133368 Hcn3 protein_coding Interval_155511 chr8 34045196 34045438 + 0 NA Intergenic Intergenic -9305 ENSMUSG00000054618.8 ENSMUSG00000054618 ENSMUST00000149618 Gm9951 lincRNA Interval_166886 chr9 63687581 63687914 + 0 NA intron (ENSMUSG00000032402.12, intron 1 of 8) protein_coding-intron (ENSMUSG00000032402.12, intron 1 of 8) 24222 ENSMUSG00000032402.12 ENSMUSG00000032402 ENSMUST00000137065 Smad3 protein_coding Interval_170953 chr9 113192361 113193487 + 0 NA Intergenic Intergenic -3109 ENSMUSG00000111235.1 ENSMUSG00000111235 ENSMUST00000213839 Gm4657 lincRNA Interval_48109 chr13 96149616 96150194 + 0 NA Intergenic Intergenic 16536 ENSMUSG00000100475.1 ENSMUSG00000100475 ENSMUST00000188138 Gm29543 lincRNA Interval_138807 chr6 92074800 92075013 + 0 NA TTS (ENSMUSG00000034037.14) protein_coding-TTS (ENSMUSG00000034037.14) 7477 ENSMUSG00000034037.14 ENSMUSG00000034037 ENSMUST00000130369 Fgd5 protein_coding Interval_2767 chr1 44541344 44541807 + 0 NA Intergenic Intergenic -19310 ENSMUSG00000102319.1 ENSMUSG00000102319 ENSMUST00000194332 Gm37626 TEC Interval_62001 chr15 85810878 85812121 + 0 NA promoter-TSS (ENSMUSG00000064284.12) protein_coding-promoter-TSS (ENSMUSG00000064284.12) 160 ENSMUSG00000064284.12 ENSMUSG00000064284 ENSMUST00000154814 Cdpf1 protein_coding Interval_171965 chr9 122994800 122995085 + 0 NA intron (ENSMUSG00000036768.6, intron 12 of 17) protein_coding-intron (ENSMUSG00000036768.6, intron 17 of 34) 1815 ENSMUSG00000111617.1 ENSMUSG00000111617 ENSMUST00000217243 Gm47148 TEC Interval_167092 chr9 65195657 65196994 + 0 NA TTS (ENSMUSG00000095738.1) snRNA-TTS (ENSMUSG00000095738.1) 362 ENSMUSG00000095738.1 ENSMUSG00000095738 ENSMUST00000101817 Gm25313 snRNA Interval_74927 chr17 57413534 57414182 + 0 NA TTS (ENSMUSG00000004730.15) protein_coding-TTS (ENSMUSG00000004730.15) 55159 ENSMUSG00000004730.15 ENSMUSG00000004730 ENSMUST00000004850 Adgre1 protein_coding Interval_170099 chr9 104429875 104430257 + 0 NA Intergenic Intergenic 3953 ENSMUSG00000089406.1 ENSMUSG00000089406 ENSMUST00000158781 Mir2136 miRNA Interval_96211 chr2 120547250 120548001 + 0 NA intron (ENSMUSG00000027288.16, intron 1 of 2) protein_coding-intron (ENSMUSG00000027288.16, intron 2 of 21) -7765 ENSMUSG00000027288.16 ENSMUSG00000027288 ENSMUST00000147353 Zfp106 protein_coding Interval_127171 chr5 100804546 100804951 + 0 NA TTS (ENSMUSG00000016833.14) protein_coding-TTS (ENSMUSG00000016833.14) 5999 ENSMUSG00000104761.1 ENSMUSG00000104761 ENSMUST00000197084 Gm43511 TEC Interval_82696 chr18 76021290 76021623 + 0 NA intron (ENSMUSG00000044646.15, intron 3 of 5) protein_coding-intron (ENSMUSG00000044646.15, intron 3 of 4) -5779 ENSMUSG00000118311.1 ENSMUSG00000118311 ENSMUST00000238127 1700003O11Rik antisense Interval_16402 chr10 62741497 62742845 + 0 NA Intergenic Intergenic -16370 ENSMUSG00000036923.12 ENSMUSG00000036923 ENSMUST00000126979 Stox1 protein_coding Interval_42346 chr13 12257177 12258351 + 0 NA intron (ENSMUSG00000021311.9, intron 1 of 17) protein_coding-intron (ENSMUSG00000021311.9, intron 1 of 32) 349 ENSMUSG00000021311.9 ENSMUSG00000021311 ENSMUST00000221290 Mtr protein_coding Interval_26710 chr11 59885103 59886549 + 0 NA Intergenic Intergenic -12548 ENSMUSG00000084766.1 ENSMUSG00000084766 ENSMUST00000143391 Gm12714 lincRNA Interval_65819 chr16 29434613 29435288 + 0 NA intron (ENSMUSG00000038094.15, intron 17 of 29) protein_coding-intron (ENSMUSG00000038094.15, intron 18 of 21) -56367 ENSMUSG00000048939.13 ENSMUSG00000048939 ENSMUST00000152040 Atp13a5 protein_coding Interval_26969 chr11 61956612 61957765 + 0 NA intron (ENSMUSG00000042331.13, intron 1 of 14) protein_coding-intron (ENSMUSG00000042331.13, intron 1 of 2) 6273 ENSMUSG00000084805.1 ENSMUSG00000084805 ENSMUST00000137418 Gm12273 lincRNA Interval_75014 chr17 60495316 60495518 + 0 NA Intergenic Intergenic 4875 ENSMUSG00000117112.1 ENSMUSG00000117112 ENSMUST00000232928 Gm4512 processed_pseudogene Interval_6133 chr1 97794059 97795007 + 0 NA TTS (ENSMUSG00000026333.14) protein_coding-TTS (ENSMUSG00000026333.14) 17134 ENSMUSG00000026333.14 ENSMUSG00000026333 ENSMUST00000189031 Gin1 protein_coding Interval_160130 chr8 106621554 106621845 + 0 NA intron (ENSMUSG00000000303.12, intron 2 of 16) protein_coding-intron (ENSMUSG00000000303.12, intron 2 of 15) 18320 ENSMUSG00000000303.12 ENSMUSG00000000303 ENSMUST00000136580 Cdh1 protein_coding Interval_50725 chr14 18598702 18598993 + 0 NA intron (ENSMUSG00000058317.12, intron 4 of 4) protein_coding-intron (ENSMUSG00000058317.12, intron 3 of 4) -53715 ENSMUSG00000114529.1 ENSMUSG00000114529 ENSMUST00000224515 Gm4939 processed_pseudogene Interval_58759 chr15 37859997 37860635 + 0 NA Intergenic Intergenic -7770 ENSMUSG00000097679.1 ENSMUSG00000097679 ENSMUST00000180745 Rps19-ps5 processed_pseudogene Interval_154485 chr8 18615789 18616541 + 0 NA intron (ENSMUSG00000039842.15, intron 3 of 11) protein_coding-intron (ENSMUSG00000039842.15, intron 3 of 13) -2056 ENSMUSG00000077287.1 ENSMUSG00000077287 ENSMUST00000104099 Gm25763 snoRNA Interval_7160 chr1 127313586 127315134 + 0 NA intron (ENSMUSG00000036155.13, intron 3 of 10) protein_coding-intron (ENSMUSG00000036155.13, intron 3 of 17) -17452 ENSMUSG00000106307.1 ENSMUSG00000106307 ENSMUST00000199545 Gm23370 scaRNA Interval_146613 chr7 48250752 48251146 + 0 NA Intergenic Intergenic -30109 ENSMUSG00000097955.1 ENSMUSG00000097955 ENSMUST00000182734 Gm26950 processed_pseudogene Interval_131122 chr5 135270230 135271130 + 0 NA Intergenic Intergenic 6354 ENSMUSG00000106913.1 ENSMUSG00000106913 ENSMUST00000201947 9430007M09Rik TEC Interval_99387 chr2 160510226 160511316 + 0 NA Intergenic Intergenic -72586 ENSMUSG00000078955.3 ENSMUSG00000078955 ENSMUST00000128681 Gm14222 sense_intronic Interval_19439 chr10 99265360 99265716 + 0 NA promoter-TSS (ENSMUSG00000019960.8) protein_coding-promoter-TSS (ENSMUSG00000019960.8) 2307 ENSMUSG00000019960.8 ENSMUSG00000019960 ENSMUST00000220218 Dusp6 protein_coding Interval_133918 chr6 15518158 15518726 + 0 NA Intergenic Intergenic 113461 ENSMUSG00000093317.1 ENSMUSG00000093317 ENSMUST00000175576 Gm25470 miRNA Interval_23652 chr11 24100128 24100539 + 0 NA intron (ENSMUSG00000086612.1, intron 3 of 3) protein_coding-intron (ENSMUSG00000000861.15, intron 2 of 4) 15072 ENSMUSG00000086612.1 ENSMUSG00000086612 ENSMUST00000133819 Gm12064 antisense Interval_90330 chr2 29809512 29809990 + 0 NA intron (ENSMUSG00000059316.2, intron 2 of 3) protein_coding-intron (ENSMUSG00000059316.2, intron 5 of 12) 2753 ENSMUSG00000059316.2 ENSMUSG00000059316 ENSMUST00000136444 Slc27a4 protein_coding Interval_111026 chr4 11299496 11300188 + 0 NA intron (ENSMUSG00000045205.16, intron 6 of 12) protein_coding-intron (ENSMUSG00000045205.16, intron 6 of 18) -20423 ENSMUSG00000089185.1 ENSMUSG00000089185 ENSMUST00000158560 Gm22940 snRNA Interval_125707 chr5 73402889 73403771 + 0 NA Intergenic Intergenic -5517 ENSMUSG00000106958.1 ENSMUSG00000106958 ENSMUST00000202712 Gm35960 processed_pseudogene Interval_123676 chr5 34446449 34446911 + 0 NA intron (ENSMUSG00000037210.16, intron 2 of 2) protein_coding-intron (ENSMUSG00000037210.16, intron 9 of 16) 15461 ENSMUSG00000037210.16 ENSMUSG00000037210 ENSMUST00000181379 Fam193a protein_coding Interval_33004 chr11 113617482 113619878 + 0 NA promoter-TSS (ENSMUSG00000047904.6) protein_coding-promoter-TSS (ENSMUSG00000047904.6) -662 ENSMUSG00000047904.6 ENSMUSG00000047904 ENSMUST00000067591 Sstr2 protein_coding Interval_130739 chr5 130060118 130060332 + 0 NA TTS (ENSMUSG00000025532.13) protein_coding-TTS (ENSMUSG00000025532.13) 30914 ENSMUSG00000025532.13 ENSMUSG00000025532 ENSMUST00000202691 Crcp protein_coding Interval_110623 chr4 4970410 4970638 + 0 NA Intergenic Intergenic 8350 ENSMUSG00000083228.1 ENSMUSG00000083228 ENSMUST00000118541 Gm11779 processed_pseudogene Interval_105052 chr3 80336484 80337202 + 0 NA Intergenic Intergenic -2248 ENSMUSG00000102379.1 ENSMUSG00000102379 ENSMUST00000193516 Gm37971 lincRNA Interval_169314 chr9 96342156 96342394 + 0 NA intron (ENSMUSG00000032412.8, intron 1 of 2) protein_coding-intron (ENSMUSG00000032412.8, intron 3 of 6) 1306 ENSMUSG00000032412.8 ENSMUSG00000032412 ENSMUST00000187341 Atp1b3 protein_coding Interval_75569 chr17 68210460 68211457 + 0 NA Intergenic Intergenic -23222 ENSMUSG00000117193.1 ENSMUSG00000117193 ENSMUST00000233387 Gm36252 lincRNA Interval_117154 chr4 120104242 120105060 + 0 NA intron (ENSMUSG00000028634.17, intron 2 of 5) protein_coding-intron (ENSMUSG00000028634.17, intron 5 of 8) 39655 ENSMUSG00000115115.1 ENSMUSG00000115115 ENSMUST00000226560 AL607142.1 protein_coding Interval_123939 chr5 36756662 36757768 + 0 NA Intergenic Intergenic -8565 ENSMUSG00000060708.4 ENSMUSG00000060708 ENSMUST00000071949 Bloc1s4 protein_coding Interval_137470 chr6 72647203 72648179 + 0 NA intron (ENSMUSG00000055799.13, intron 3 of 5) protein_coding-intron (ENSMUSG00000055799.13, intron 4 of 11) -3606 ENSMUSG00000102931.1 ENSMUSG00000102931 ENSMUST00000191877 Gm38114 TEC Interval_158306 chr8 80987580 80987861 + 0 NA intron (ENSMUSG00000038250.9, intron 7 of 9) protein_coding-intron (ENSMUSG00000038250.9, intron 7 of 9) 27193 ENSMUSG00000038250.9 ENSMUSG00000038250 ENSMUST00000211538 Usp38 protein_coding Interval_56202 chr14 112216158 112216398 + 0 NA Intergenic Intergenic 112897 ENSMUSG00000115581.1 ENSMUSG00000115581 ENSMUST00000228614 Gm20127 processed_pseudogene Interval_33723 chr11 118090993 118091831 + 0 NA exon (ENSMUSG00000033987.16, exon 2 of 5) protein_coding-exon (ENSMUSG00000033987.16, exon 2 of 5) -2218 ENSMUSG00000033987.16 ENSMUSG00000033987 ENSMUST00000018719 Dnah17 protein_coding Interval_84714 chr19 15879421 15879959 + 0 NA Intergenic Intergenic -63920 ENSMUSG00000090147.1 ENSMUSG00000090147 ENSMUST00000159873 Gm3329 processed_pseudogene Interval_52733 chr14 49171442 49173428 + 0 NA promoter-TSS (ENSMUSG00000036282.15) protein_coding-promoter-TSS (ENSMUSG00000036282.15) 209 ENSMUSG00000036282.15 ENSMUSG00000036282 ENSMUST00000134984 Naa30 protein_coding Interval_65429 chr16 22291722 22291937 + 0 NA Intergenic Intergenic -3198 ENSMUSG00000082241.4 ENSMUSG00000082241 ENSMUST00000120931 Gng5-ps processed_pseudogene Interval_111913 chr4 32499296 32500088 + 0 NA intron (ENSMUSG00000040270.16, intron 1 of 4) protein_coding-intron (ENSMUSG00000040270.16, intron 3 of 7) -15095 ENSMUSG00000084611.1 ENSMUSG00000084611 ENSMUST00000122662 Gm24371 misc_RNA Interval_93231 chr2 71336225 71337166 + 0 NA intron (ENSMUSG00000027010.16, intron 3 of 17) protein_coding-intron (ENSMUSG00000027010.16, intron 1 of 2) 16912 ENSMUSG00000082190.1 ENSMUSG00000082190 ENSMUST00000117993 Gm13641 processed_pseudogene Interval_23085 chr11 19837152 19838342 + 0 NA Intergenic Intergenic 54095 ENSMUSG00000081820.1 ENSMUSG00000081820 ENSMUST00000120073 Gm12029 processed_pseudogene Interval_68093 chr16 64972214 64972603 + 0 NA intron (ENSMUSG00000050783.5, intron 2 of 2) protein_coding-intron (ENSMUSG00000050783.5, intron 2 of 2) -53324 ENSMUSG00000116811.1 ENSMUSG00000116811 ENSMUST00000232275 Gm16385 processed_pseudogene Interval_118436 chr4 131523052 131523389 + 0 NA Intergenic Intergenic 36023 ENSMUSG00000078531.3 ENSMUSG00000078531 ENSMUST00000149942 Gm831 lincRNA Interval_89715 chr2 24949186 24950537 + 0 NA promoter-TSS (ENSMUSG00000026974.11) protein_coding-promoter-TSS (ENSMUSG00000026974.11) -349 ENSMUSG00000026974.11 ENSMUSG00000026974 ENSMUST00000148042 Zmynd19 protein_coding Interval_46902 chr13 73290282 73290968 + 0 NA Intergenic Intergenic 17395 ENSMUSG00000113485.1 ENSMUSG00000113485 ENSMUST00000223190 Gm48000 TEC Interval_30146 chr11 89699834 89700352 + 0 NA intron (ENSMUSG00000047773.15, intron 3 of 21) protein_coding-intron (ENSMUSG00000047773.15, intron 1 of 1) 141173 ENSMUSG00000047773.15 ENSMUSG00000047773 ENSMUST00000207171 Ankfn1 protein_coding Interval_165200 chr9 45215497 45215683 + 0 NA intron (ENSMUSG00000091996.8, intron 1 of 4) protein_coding-intron (ENSMUSG00000091996.8, intron 1 of 4) -11500 ENSMUSG00000032091.15 ENSMUSG00000032091 ENSMUST00000163945 Tmprss4 protein_coding Interval_14982 chr10 41682710 41683206 + 0 NA intron (ENSMUSG00000075225.15, intron 4 of 13) protein_coding-intron (ENSMUSG00000075225.15, intron 1 of 12) 3098 ENSMUSG00000111376.1 ENSMUSG00000111376 ENSMUST00000214137 Gm47099 processed_pseudogene Interval_155539 chr8 34172205 34173158 + 0 NA Intergenic Intergenic -5969 ENSMUSG00000098785.1 ENSMUSG00000098785 ENSMUST00000183885 Mir6395 miRNA Interval_146824 chr7 52510691 52511483 + 0 NA Intergenic Intergenic 99634 ENSMUSG00000109099.1 ENSMUSG00000109099 ENSMUST00000208144 Gm20074 processed_pseudogene Interval_151459 chr7 122756347 122756860 + 0 NA intron (ENSMUSG00000066189.9, intron 2 of 2) protein_coding-intron (ENSMUSG00000066189.9, intron 2 of 3) -54685 ENSMUSG00000108718.1 ENSMUSG00000108718 ENSMUST00000206285 Gm44749 TEC Interval_154903 chr8 24957189 24958092 + 0 NA intron (ENSMUSG00000031555.15, intron 20 of 21) protein_coding-intron (ENSMUSG00000031555.15, intron 21 of 22) -8859 ENSMUSG00000037437.18 ENSMUSG00000037437 ENSMUST00000133088 Adam32 protein_coding Interval_78012 chr18 6679558 6680304 + 0 NA Intergenic Intergenic 11386 ENSMUSG00000117620.1 ENSMUSG00000117620 ENSMUST00000234799 Gm50077 processed_pseudogene Interval_30272 chr11 92648343 92648630 + 0 NA Intergenic Intergenic 122487 ENSMUSG00000081363.2 ENSMUSG00000081363 ENSMUST00000118237 Gm11500 processed_pseudogene Interval_144941 chr7 29026689 29027161 + 0 NA intron (ENSMUSG00000030592.18, intron 92 of 108) protein_coding-intron (ENSMUSG00000030592.18, intron 89 of 105) -2098 ENSMUSG00000109017.1 ENSMUSG00000109017 ENSMUST00000207099 Gm38979 antisense Interval_170032 chr9 103854199 103854457 + 0 NA Intergenic Intergenic -33681 ENSMUSG00000100266.2 ENSMUSG00000100266 ENSMUST00000187540 Gm5372 processed_pseudogene Interval_174806 chrX 167070427 167070757 + 0 NA promoter-TSS (ENSMUSG00000086008.8) lincRNA-promoter-TSS (ENSMUSG00000086008.8) -2203 ENSMUSG00000086008.8 ENSMUSG00000086008 ENSMUST00000171902 Gm8817 lincRNA Interval_90234 chr2 29184296 29185073 + 0 NA Intergenic Intergenic 58798 ENSMUSG00000043535.13 ENSMUSG00000043535 ENSMUST00000145422 Setx protein_coding Interval_135001 chr6 34447759 34448240 + 0 NA Intergenic Intergenic -4885 ENSMUSG00000084965.1 ENSMUSG00000084965 ENSMUST00000141091 Gm13857 transcribed_processed_pseudogene Interval_153517 chr7 145338149 145339084 + 0 NA Intergenic Intergenic 23781 ENSMUSG00000051207.7 ENSMUSG00000051207 ENSMUST00000062163 Mrgprd protein_coding Interval_10495 chr1 171311649 171315598 + 0 NA Intergenic Intergenic 5576 ENSMUSG00000087747.1 ENSMUSG00000087747 ENSMUST00000157122 Gm25151 snoRNA Interval_5254 chr1 86972298 86972923 + 0 NA intron (ENSMUSG00000053333.15, intron 12 of 20) protein_coding-intron (ENSMUSG00000053333.15, intron 11 of 20) -15660 ENSMUSG00000102956.1 ENSMUSG00000102956 ENSMUST00000195266 Gm37017 TEC Interval_47398 chr13 83318890 83319168 + 0 NA Intergenic Intergenic -129320 ENSMUSG00000114735.1 ENSMUSG00000114735 ENSMUST00000224835 Gm48156 processed_pseudogene Interval_59885 chr15 60794089 60794900 + 0 NA Intergenic Intergenic -28459 ENSMUSG00000097493.3 ENSMUSG00000097493 ENSMUST00000181910 9930014A18Rik processed_transcript Interval_522 chr1 6983728 6985189 + 0 NA Intergenic Intergenic -13759 ENSMUSG00000102534.1 ENSMUSG00000102534 ENSMUST00000193423 Gm37225 processed_pseudogene Interval_122575 chr5 23863911 23864784 + 0 NA TTS (ENSMUSG00000118576.1) unprocessed_pseudogene-TTS (ENSMUSG00000118576.1) 12096 ENSMUSG00000118576.1 ENSMUSG00000118576 ENSMUST00000239129 AC117663.1 unprocessed_pseudogene Interval_75591 chr17 69107281 69107784 + 0 NA intron (ENSMUSG00000024044.19, intron 1 of 3) protein_coding-intron (ENSMUSG00000024044.19, intron 1 of 3) -19468 ENSMUSG00000024044.19 ENSMUSG00000024044 ENSMUST00000223565 Epb41l3 protein_coding Interval_53550 chr14 59016195 59016553 + 0 NA Intergenic Intergenic 29566 ENSMUSG00000114441.1 ENSMUSG00000114441 ENSMUST00000224109 Gm33472 lincRNA Interval_33178 chr11 114994550 114995811 + 0 NA Intergenic Intergenic -5258 ENSMUSG00000034641.2 ENSMUSG00000034641 ENSMUST00000045075 Cd300ld protein_coding Interval_4286 chr1 72395195 72395796 + 0 NA TTS (ENSMUSG00000026187.9) protein_coding-TTS (ENSMUSG00000026187.9) -64004 ENSMUSG00000085812.1 ENSMUSG00000085812 ENSMUST00000146593 Gm15843 processed_pseudogene Interval_95169 chr2 104511365 104511860 + 0 NA Intergenic Intergenic -25825 ENSMUSG00000081447.1 ENSMUSG00000081447 ENSMUST00000117214 Gm13870 processed_pseudogene Interval_25816 chr11 51894676 51895044 + 0 NA Intergenic Intergenic -4106 ENSMUSG00000110618.1 ENSMUSG00000110618 ENSMUST00000212253 Gm39822 lincRNA Interval_52648 chr14 48230196 48231110 + 0 NA intron (ENSMUSG00000021846.9, intron 1 of 4) protein_coding-intron (ENSMUSG00000021846.9, intron 2 of 5) 3452 ENSMUSG00000063885.5 ENSMUSG00000063885 ENSMUST00000181413 Gm6498 transcribed_processed_pseudogene Interval_117128 chr4 119809138 119809699 + 0 NA intron (ENSMUSG00000028634.17, intron 2 of 3) protein_coding-intron (ENSMUSG00000028634.17, intron 2 of 3) -150637 ENSMUSG00000032978.14 ENSMUSG00000032978 ENSMUST00000044426 Guca2b protein_coding Interval_81427 chr18 60690207 60691281 + 0 NA intron (ENSMUSG00000054008.9, intron 13 of 14) protein_coding-intron (ENSMUSG00000054008.9, intron 12 of 13) 42406 ENSMUSG00000054008.9 ENSMUSG00000054008 ENSMUST00000237070 Ndst1 protein_coding Interval_33769 chr11 118400814 118401012 + 0 NA exon (ENSMUSG00000033880.11, exon 1 of 2) protein_coding-exon (ENSMUSG00000033880.11, exon 1 of 2) -2762 ENSMUSG00000033880.11 ENSMUSG00000033880 ENSMUST00000127054 Lgals3bp protein_coding Interval_74877 chr17 57021924 57023390 + 0 NA TTS (ENSMUSG00000007670.10) protein_coding-TTS (ENSMUSG00000007670.10) 8865 ENSMUSG00000007670.10 ENSMUSG00000007670 ENSMUST00000232765 Khsrp protein_coding Interval_78808 chr18 20738474 20738908 + 0 NA intron (ENSMUSG00000056124.5, intron 1 of 8) protein_coding-intron (ENSMUSG00000056124.5, intron 1 of 8) 7713 ENSMUSG00000056124.5 ENSMUSG00000056124 ENSMUST00000070080 B4galt6 protein_coding Interval_26817 chr11 60818996 60819531 + 0 NA promoter-TSS (ENSMUSG00000083016.4) processed_pseudogene-promoter-TSS (ENSMUSG00000083016.4) 15 ENSMUSG00000083016.4 ENSMUSG00000083016 ENSMUST00000121754 Gm12618 processed_pseudogene Interval_105588 chr3 87947402 87948681 + 0 NA promoter-TSS (ENSMUSG00000004885.5) protein_coding-promoter-TSS (ENSMUSG00000004885.5) -4103 ENSMUSG00000004885.5 ENSMUSG00000004885 ENSMUST00000163040 Crabp2 protein_coding Interval_106683 chr3 98626916 98627425 + 0 NA intron (ENSMUSG00000038092.6, intron 1 of 2) protein_coding-intron (ENSMUSG00000038092.6, intron 1 of 2) 3082 ENSMUSG00000038092.6 ENSMUSG00000038092 ENSMUST00000044094 Hsd3b5 protein_coding Interval_69364 chr16 92478636 92479015 + 0 NA promoter-TSS (ENSMUSG00000051297.8) sense_overlapping-promoter-TSS (ENSMUSG00000051297.8) 83 ENSMUSG00000051297.8 ENSMUSG00000051297 ENSMUST00000160494 2410124H12Rik sense_overlapping Interval_57015 chr15 4164609 4164996 + 0 NA Intergenic Intergenic 79843 ENSMUSG00000115032.1 ENSMUSG00000115032 ENSMUST00000227247 Gm49301 processed_pseudogene Interval_174051 chrX 133345501 133346126 + 0 NA Intergenic Intergenic 30740 ENSMUSG00000088421.1 ENSMUSG00000088421 ENSMUST00000157796 Gm22552 misc_RNA Interval_125047 chr5 64095120 64096130 + 0 NA intron (ENSMUSG00000029171.12, intron 1 of 13) protein_coding-intron (ENSMUSG00000029171.12, intron 1 of 13) 5882 ENSMUSG00000094244.1 ENSMUSG00000094244 ENSMUST00000175062 Gm23967 miRNA Interval_6027 chr1 94080671 94082272 + 0 NA Intergenic Intergenic -28918 ENSMUSG00000026285.7 ENSMUSG00000026285 ENSMUST00000027507 Pdcd1 protein_coding Interval_106168 chr3 94289230 94289929 + 0 NA Intergenic Intergenic -14155 ENSMUSG00000089891.1 ENSMUSG00000089891 ENSMUST00000163001 Gm16561 unprocessed_pseudogene Interval_123235 chr5 30795909 30797720 + 0 NA TTS (ENSMUSG00000029168.14) protein_coding-TTS (ENSMUSG00000029168.14) 8624 ENSMUSG00000029168.14 ENSMUSG00000029168 ENSMUST00000138625 Dpysl5 protein_coding Interval_90629 chr2 31566247 31566602 + 0 NA Intergenic Intergenic -6390 ENSMUSG00000026843.15 ENSMUSG00000026843 ENSMUST00000132534 Fubp3 protein_coding Interval_27814 chr11 70165910 70166978 + 0 NA promoter-TSS (ENSMUSG00000000318.16) protein_coding-promoter-TSS (ENSMUSG00000000318.16) -2866 ENSMUSG00000000318.16 ENSMUSG00000000318 ENSMUST00000153959 Clec10a protein_coding Interval_16362 chr10 62491626 62492475 + 0 NA Intergenic Intergenic -5318 ENSMUSG00000020078.16 ENSMUSG00000020078 ENSMUST00000217868 Vps26a protein_coding Interval_26840 chr11 60976379 60977497 + 0 NA Intergenic Intergenic 44884 ENSMUSG00000018932.9 ENSMUSG00000018932 ENSMUST00000137609 Map2k3 protein_coding Interval_39500 chr12 88709188 88709924 + 0 NA Intergenic Intergenic 77287 ENSMUSG00000113997.1 ENSMUSG00000113997 ENSMUST00000222440 1700040E09Rik lincRNA Interval_159996 chr8 105651194 105651399 + 0 NA intron (ENSMUSG00000005698.15, intron 2 of 9) protein_coding-intron (ENSMUSG00000005698.15, intron 2 of 11) 9491 ENSMUSG00000080021.5 ENSMUSG00000080021 ENSMUST00000116136 Gm5915 processed_pseudogene Interval_161573 chr8 121294889 121295657 + 0 NA intron (ENSMUSG00000097384.1, intron 1 of 1) protein_coding-intron (ENSMUSG00000092329.1, intron 1 of 15) 61563 ENSMUSG00000097384.1 ENSMUSG00000097384 ENSMUST00000181200 Gm26815 lincRNA Interval_150800 chr7 114744866 114746376 + 0 NA promoter-TSS (ENSMUSG00000048782.15) protein_coding-promoter-TSS (ENSMUSG00000048782.15) 26946 ENSMUSG00000030666.11 ENSMUSG00000030666 ENSMUST00000182044 Calcb protein_coding Interval_173784 chrX 104120163 104120642 + 0 NA intron (ENSMUSG00000046449.15, intron 1 of 4) protein_coding-intron (ENSMUSG00000046449.15, intron 1 of 3) -4128 ENSMUSG00000076286.1 ENSMUSG00000076286 ENSMUST00000102331 Mir672 miRNA Interval_31822 chr11 103150323 103151499 + 0 NA Intergenic Intergenic 18482 ENSMUSG00000043372.12 ENSMUSG00000043372 ENSMUST00000130341 Hexim2 protein_coding Interval_158087 chr8 78646850 78647352 + 0 NA intron (ENSMUSG00000031684.11, intron 1 of 2) protein_coding-intron (ENSMUSG00000031684.11, intron 5 of 11) 42807 ENSMUSG00000110244.1 ENSMUSG00000110244 ENSMUST00000211775 Gm2253 processed_pseudogene Interval_66524 chr16 34763319 34763742 + 0 NA intron (ENSMUSG00000022836.11, intron 1 of 5) protein_coding-intron (ENSMUSG00000022836.11, intron 1 of 5) 72820 ENSMUSG00000022833.7 ENSMUSG00000022833 ENSMUST00000232341 Ccdc14 protein_coding Interval_71031 chr17 17302778 17304200 + 0 NA intron (ENSMUSG00000072761.10, intron 1 of 3) lincRNA-intron (ENSMUSG00000072761.10, intron 1 of 3) 9046 ENSMUSG00000072761.10 ENSMUSG00000072761 ENSMUST00000105311 Gm6712 lincRNA Interval_12741 chr10 4625089 4625478 + 0 NA intron (ENSMUSG00000019768.16, intron 1 of 8) protein_coding-intron (ENSMUSG00000019768.16, intron 1 of 8) 13690 ENSMUSG00000019768.16 ENSMUSG00000019768 ENSMUST00000137012 Esr1 protein_coding Interval_121545 chr5 3350614 3351372 + 0 NA intron (ENSMUSG00000040274.11, intron 1 of 1) protein_coding-intron (ENSMUSG00000040274.11, intron 1 of 6) 80674 ENSMUSG00000106658.1 ENSMUSG00000106658 ENSMUST00000197473 Gm36548 lincRNA Interval_40336 chr12 103957067 103958093 + 0 NA promoter-TSS (ENSMUSG00000072849.10) protein_coding-promoter-TSS (ENSMUSG00000072849.10) 1395 ENSMUSG00000072849.10 ENSMUSG00000072849 ENSMUST00000085054 Serpina1e protein_coding Interval_82433 chr18 73969910 73971382 + 0 NA TTS (ENSMUSG00000024558.12) protein_coding-TTS (ENSMUSG00000024558.12) -47261 ENSMUSG00000090263.1 ENSMUSG00000090263 ENSMUST00000159260 D730045A05Rik lincRNA Interval_56612 chr14 120848332 120849755 + 0 NA Intergenic Intergenic 21885 ENSMUSG00000115028.1 ENSMUSG00000115028 ENSMUST00000228417 Gm9391 processed_pseudogene Interval_111389 chr4 20219574 20219976 + 0 NA intron (ENSMUSG00000055761.14, intron 4 of 5) protein_coding-intron (ENSMUSG00000055761.14, intron 4 of 5) -123931 ENSMUSG00000086017.1 ENSMUSG00000086017 ENSMUST00000141819 Gm11872 antisense Interval_91405 chr2 38591716 38592797 + 0 NA exon (ENSMUSG00000026749.11, exon 10 of 10) protein_coding-exon (ENSMUSG00000026749.11, exon 10 of 10) -25902 ENSMUSG00000107535.1 ENSMUSG00000107535 ENSMUST00000203964 Gm44183 TEC Interval_88489 chr2 5573436 5573638 + 0 NA intron (ENSMUSG00000039145.16, intron 1 of 1) protein_coding-intron (ENSMUSG00000039145.16, intron 1 of 10) -30034 ENSMUSG00000082013.1 ENSMUSG00000082013 ENSMUST00000117145 Gm13216 processed_pseudogene Interval_14206 chr10 28832386 28832560 + 0 NA intron (ENSMUSG00000049109.15, intron 5 of 5) protein_coding-intron (ENSMUSG00000049109.15, intron 4 of 5) -25717 ENSMUSG00000112111.1 ENSMUSG00000112111 ENSMUST00000218178 Gm47834 processed_pseudogene Interval_114302 chr4 71909088 71909384 + 0 NA Intergenic Intergenic 41248 ENSMUSG00000081117.1 ENSMUSG00000081117 ENSMUST00000122357 Gm11233 processed_pseudogene Interval_126853 chr5 95672739 95673524 + 0 NA Intergenic Intergenic 10826 ENSMUSG00000107213.1 ENSMUSG00000107213 ENSMUST00000201462 Gm3302 unprocessed_pseudogene Interval_50822 chr14 20027468 20027917 + 0 NA Intergenic Intergenic 30605 ENSMUSG00000114498.1 ENSMUSG00000114498 ENSMUST00000224881 Gm48339 processed_pseudogene Interval_33681 chr11 117887948 117891014 + 0 NA Intergenic Intergenic -16000 ENSMUSG00000017713.9 ENSMUSG00000017713 ENSMUST00000138354 Tha1 protein_coding Interval_115292 chr4 95444002 95445222 + 0 NA Intergenic Intergenic -39344 ENSMUSG00000085835.1 ENSMUSG00000085835 ENSMUST00000155789 Gm12707 processed_transcript Interval_29910 chr11 87696966 87697359 + 0 NA intron (ENSMUSG00000034177.15, intron 1 of 7) protein_coding-intron (ENSMUSG00000034177.15, intron 1 of 8) -2581 ENSMUSG00000087792.1 ENSMUSG00000087792 ENSMUST00000157167 Gm25968 snRNA Interval_65719 chr16 25956421 25956645 + 0 NA promoter-TSS (ENSMUSG00000090257.1) antisense-promoter-TSS (ENSMUSG00000090257.1) 58 ENSMUSG00000090257.1 ENSMUSG00000090257 ENSMUST00000161614 Gm4524 antisense Interval_19757 chr10 108535476 108535676 + 0 NA intron (ENSMUSG00000035864.14, intron 10 of 11) protein_coding-intron (ENSMUSG00000035864.14, intron 9 of 10) 52926 ENSMUSG00000112065.1 ENSMUSG00000112065 ENSMUST00000217917 Gm47466 processed_pseudogene Interval_27445 chr11 67855176 67855652 + 0 NA TTS (ENSMUSG00000020905.11) protein_coding-TTS (ENSMUSG00000020905.11) 57127 ENSMUSG00000033044.12 ENSMUSG00000033044 ENSMUST00000168612 Dhrs7c protein_coding Interval_94602 chr2 92581307 92581659 + 0 NA Intergenic Intergenic -10723 ENSMUSG00000099223.1 ENSMUSG00000099223 ENSMUST00000184009 Mir7221 miRNA Interval_18369 chr10 85331105 85332388 + 0 NA Intergenic Intergenic -2155 ENSMUSG00000087895.1 ENSMUSG00000087895 ENSMUST00000157270 Gm25281 miRNA Interval_166885 chr9 63682091 63683001 + 0 NA intron (ENSMUSG00000032402.12, intron 1 of 8) protein_coding-intron (ENSMUSG00000032402.12, intron 1 of 8) 29423 ENSMUSG00000032402.12 ENSMUSG00000032402 ENSMUST00000137065 Smad3 protein_coding Interval_91291 chr2 37477639 37478056 + 0 NA intron (ENSMUSG00000035437.15, intron 5 of 7) protein_coding-intron (ENSMUSG00000035437.15, intron 5 of 25) -10828 ENSMUSG00000107491.1 ENSMUSG00000107491 ENSMUST00000203017 Gm17893 processed_pseudogene Interval_158160 chr8 79339513 79339940 + 0 NA exon (ENSMUSG00000031681.16, exon 7 of 7) protein_coding-exon (ENSMUSG00000031681.16, exon 7 of 7) 16952 ENSMUSG00000031681.16 ENSMUSG00000031681 ENSMUST00000066081 Smad1 protein_coding Interval_42418 chr13 13402234 13402731 + 0 NA promoter-TSS (ENSMUSG00000088470.1) misc_RNA-promoter-TSS (ENSMUSG00000088470.1) -354 ENSMUSG00000088470.1 ENSMUSG00000088470 ENSMUST00000157845 Gm23081 misc_RNA Interval_117435 chr4 123666746 123667801 + 0 NA promoter-TSS (ENSMUSG00000087307.1) antisense-promoter-TSS (ENSMUSG00000087307.1) 1392 ENSMUSG00000087307.1 ENSMUSG00000087307 ENSMUST00000138861 Gm12925 antisense Interval_81975 chr18 66549391 66550077 + 0 NA TTS (ENSMUSG00000089387.1) snoRNA-TTS (ENSMUSG00000089387.1) 311 ENSMUSG00000089387.1 ENSMUSG00000089387 ENSMUST00000158762 Gm24679 snoRNA Interval_3966 chr1 65143161 65144016 + 0 NA Intergenic Intergenic -20474 ENSMUSG00000044816.10 ENSMUSG00000044816 ENSMUST00000153330 D630023F18Rik protein_coding Interval_37723 chr12 71429749 71430384 + 0 NA intron (ENSMUSG00000113441.1, intron 2 of 5) lincRNA-intron (ENSMUSG00000113441.1, intron 2 of 5) -45858 ENSMUSG00000100668.1 ENSMUSG00000100668 ENSMUST00000190526 1700083H02Rik lincRNA Interval_32370 chr11 107184073 107184439 + 0 NA exon (ENSMUSG00000018433.14, exon 1 of 5) protein_coding-exon (ENSMUSG00000018433.14, exon 1 of 5) 5096 ENSMUSG00000018433.14 ENSMUSG00000018433 ENSMUST00000139168 Nol11 protein_coding Interval_107380 chr3 107081303 107081766 + 0 NA intron (ENSMUSG00000098108.7, intron 1 of 5) antisense-intron (ENSMUSG00000098108.7, intron 1 of 5) -9348 ENSMUSG00000050179.3 ENSMUSG00000050179 ENSMUST00000182132 A930002I21Rik lincRNA Interval_123888 chr5 36323500 36323946 + 0 NA intron (ENSMUSG00000029093.14, intron 1 of 7) protein_coding-intron (ENSMUSG00000029093.14, intron 1 of 26) 22153 ENSMUSG00000098884.1 ENSMUSG00000098884 ENSMUST00000184943 Mir7689 miRNA Interval_93959 chr2 80129020 80129589 + 0 NA promoter-TSS (ENSMUSG00000059173.19) protein_coding-promoter-TSS (ENSMUSG00000059173.19) -365 ENSMUSG00000059173.19 ENSMUSG00000059173 ENSMUST00000125887 Pde1a protein_coding Interval_118328 chr4 130316237 130317279 + 0 NA TTS (ENSMUSG00000028772.19) protein_coding-TTS (ENSMUSG00000028772.19) -8085 ENSMUSG00000073752.2 ENSMUSG00000073752 ENSMUST00000097865 Gm10570 antisense Interval_39342 chr12 86814846 86817358 + 0 NA Intergenic Intergenic 6145 ENSMUSG00000088403.1 ENSMUSG00000088403 ENSMUST00000157778 Gm25888 misc_RNA Interval_62752 chr15 96637782 96638465 + 0 NA TTS (ENSMUSG00000023169.15) protein_coding-TTS (ENSMUSG00000023169.15) 4090 ENSMUSG00000023169.15 ENSMUSG00000023169 ENSMUST00000229253 Slc38a1 protein_coding Interval_86164 chr19 37362271 37362505 + 0 NA Intergenic Intergenic -26019 ENSMUSG00000117988.1 ENSMUSG00000117988 ENSMUST00000237246 Gm8663 processed_pseudogene Interval_115628 chr4 101470535 101470827 + 0 NA Intergenic Intergenic 23458 ENSMUSG00000028527.18 ENSMUSG00000028527 ENSMUST00000155749 Ak4 protein_coding Interval_101565 chr3 6229958 6230226 + 0 NA Intergenic Intergenic 37808 ENSMUSG00000104270.1 ENSMUSG00000104270 ENSMUST00000193578 Gm38298 processed_pseudogene Interval_30317 chr11 93554895 93555075 + 0 NA intron (ENSMUSG00000056158.14, intron 4 of 8) protein_coding-intron (ENSMUSG00000056158.14, intron 5 of 9) -95774 ENSMUSG00000082453.1 ENSMUSG00000082453 ENSMUST00000120917 Gm11502 processed_pseudogene Interval_44774 chr13 48527882 48529098 + 0 NA Intergenic Intergenic 7624 ENSMUSG00000065453.1 ENSMUSG00000065453 ENSMUST00000083519 Mirlet7d miRNA Interval_148776 chr7 86890497 86891411 + 0 NA Intergenic Intergenic 16980 ENSMUSG00000092376.1 ENSMUSG00000092376 ENSMUST00000174049 Gm19203 processed_pseudogene Interval_37115 chr12 58579417 58580499 + 0 NA Intergenic Intergenic -183948 ENSMUSG00000112487.1 ENSMUSG00000112487 ENSMUST00000219517 Gm18873 processed_pseudogene Interval_59125 chr15 44384290 44384901 + 0 NA intron (ENSMUSG00000038736.10, intron 8 of 9) protein_coding-intron (ENSMUSG00000038736.10, intron 8 of 9) 20510 ENSMUSG00000077181.1 ENSMUSG00000077181 ENSMUST00000103993 Gm25093 snoRNA Interval_13697 chr10 21128221 21128703 + 0 NA intron (ENSMUSG00000019982.15, intron 15 of 15) protein_coding-intron (ENSMUSG00000019982.15, intron 14 of 14) -16632 ENSMUSG00000097923.1 ENSMUSG00000097923 ENSMUST00000180680 Gm26577 antisense Interval_70541 chr17 11819350 11819587 + 0 NA intron (ENSMUSG00000023826.16, intron 6 of 10) protein_coding-intron (ENSMUSG00000023826.16, intron 7 of 11) -87123 ENSMUSG00000104466.1 ENSMUSG00000104466 ENSMUST00000194203 Gm10513 TEC Interval_6429 chr1 108207945 108208307 + 0 NA Intergenic Intergenic 171312 ENSMUSG00000100041.1 ENSMUSG00000100041 ENSMUST00000185629 Gm5702 processed_pseudogene Interval_59788 chr15 59279690 59281279 + 0 NA intron (ENSMUSG00000115118.1, intron 1 of 3) lincRNA-intron (ENSMUSG00000115118.1, intron 1 of 3) 5088 ENSMUSG00000115118.1 ENSMUSG00000115118 ENSMUST00000227185 Gm36617 lincRNA Interval_85113 chr19 22961996 22962242 + 0 NA intron (ENSMUSG00000052387.16, intron 21 of 24) protein_coding-intron (ENSMUSG00000052387.16, intron 22 of 26) -99335 ENSMUSG00000118155.1 ENSMUSG00000118155 ENSMUST00000235686 Gm50136 lincRNA Interval_80529 chr18 43383116 43383333 + 0 NA intron (ENSMUSG00000024501.20, intron 1 of 13) protein_coding-intron (ENSMUSG00000024501.20, intron 1 of 13) -10001 ENSMUSG00000024501.20 ENSMUSG00000024501 ENSMUST00000118071 Dpysl3 protein_coding Interval_98573 chr2 153332991 153333304 + 0 NA exon (ENSMUSG00000027475.9, exon 9 of 9) protein_coding-exon (ENSMUSG00000027475.9, exon 9 of 9) -12682 ENSMUSG00000042548.14 ENSMUSG00000042548 ENSMUST00000138571 Asxl1 protein_coding Interval_31462 chr11 100811118 100811356 + 0 NA intron (ENSMUSG00000020919.11, intron 1 of 5) protein_coding-intron (ENSMUSG00000020919.11, intron 1 of 18) -36437 ENSMUSG00000089049.1 ENSMUSG00000089049 ENSMUST00000158424 Gm24358 misc_RNA Interval_125805 chr5 74291841 74293082 + 0 NA intron (ENSMUSG00000062110.14, intron 5 of 7) protein_coding-intron (ENSMUSG00000062110.14, intron 5 of 8) -3851 ENSMUSG00000062110.14 ENSMUSG00000062110 ENSMUST00000123203 Scfd2 protein_coding Interval_28928 chr11 79323943 79325106 + 0 NA Intergenic Intergenic -15268 ENSMUSG00000020716.16 ENSMUSG00000020716 ENSMUST00000137997 Nf1 protein_coding Interval_101211 chr2 179527985 179528186 + 0 NA intron (ENSMUSG00000000305.12, intron 2 of 2) protein_coding-intron (ENSMUSG00000000305.12, intron 2 of 15) 85482 ENSMUSG00000083410.1 ENSMUSG00000083410 ENSMUST00000120800 Gm14300 processed_pseudogene Interval_95685 chr2 114118475 114118941 + 0 NA exon (ENSMUSG00000040383.16, exon 26 of 35) protein_coding-exon (ENSMUSG00000040383.16, exon 26 of 35) 31862 ENSMUSG00000098464.1 ENSMUSG00000098464 ENSMUST00000184524 Mir7002 miRNA Interval_70739 chr17 14093811 14094968 + 0 NA Intergenic Intergenic 12061 ENSMUSG00000099476.1 ENSMUSG00000099476 ENSMUST00000188802 4930488N24Rik unprocessed_pseudogene Interval_10368 chr1 170062829 170063834 + 0 NA intron (ENSMUSG00000026674.9, intron 2 of 3) protein_coding-intron (ENSMUSG00000026674.9, intron 2 of 17) 47431 ENSMUSG00000026674.9 ENSMUSG00000026674 ENSMUST00000194619 Ddr2 protein_coding Interval_110932 chr4 10478073 10478331 + 0 NA Intergenic Intergenic 11160 ENSMUSG00000086455.1 ENSMUSG00000086455 ENSMUST00000139423 Gm11815 lincRNA Interval_116864 chr4 117806844 117807149 + 0 NA Intergenic Intergenic 18660 ENSMUSG00000083507.1 ENSMUSG00000083507 ENSMUST00000117298 Gm12842 processed_pseudogene Interval_74153 chr17 46820814 46821029 + 0 NA intron (ENSMUSG00000036568.7, intron 5 of 11) protein_coding-intron (ENSMUSG00000036568.7, intron 4 of 10) 11393 ENSMUSG00000036568.7 ENSMUSG00000036568 ENSMUST00000233455 Bicral protein_coding Interval_69125 chr16 90809962 90811011 + 0 NA promoter-TSS (ENSMUSG00000039929.14) protein_coding-promoter-TSS (ENSMUSG00000039929.14) -94 ENSMUSG00000039929.14 ENSMUSG00000039929 ENSMUST00000128989 Urb1 protein_coding Interval_163129 chr9 15501983 15503355 + 0 NA intron (ENSMUSG00000058173.12, intron 1 of 2) protein_coding-intron (ENSMUSG00000058173.12, intron 1 of 2) 9237 ENSMUSG00000058173.12 ENSMUSG00000058173 ENSMUST00000178999 Smco4 protein_coding Interval_34394 chr12 3833657 3835425 + 0 NA intron (ENSMUSG00000020661.15, intron 1 of 22) protein_coding-intron (ENSMUSG00000020661.15, intron 1 of 22) 27381 ENSMUSG00000020661.15 ENSMUSG00000020661 ENSMUST00000172913 Dnmt3a protein_coding Interval_24618 chr11 35317914 35318268 + 0 NA intron (ENSMUSG00000056427.10, intron 2 of 3) protein_coding-intron (ENSMUSG00000056427.10, intron 4 of 35) 5579 ENSMUSG00000082309.3 ENSMUSG00000082309 ENSMUST00000120348 Gm12123 processed_pseudogene Interval_94160 chr2 84758722 84759020 + 0 NA Intergenic Intergenic -15216 ENSMUSG00000097187.1 ENSMUSG00000097187 ENSMUST00000181711 Gm19426 protein_coding Interval_5137 chr1 85935436 85936578 + 0 NA exon (ENSMUSG00000099767.1, exon 1 of 2) antisense-exon (ENSMUSG00000099767.1, exon 1 of 2) 1325 ENSMUSG00000099767.1 ENSMUSG00000099767 ENSMUST00000190367 Gm28884 antisense Interval_167006 chr9 64455499 64456715 + 0 NA intron (ENSMUSG00000036466.17, intron 1 of 24) protein_coding-intron (ENSMUSG00000036466.17, intron 1 of 24) 70481 ENSMUSG00000036466.17 ENSMUSG00000036466 ENSMUST00000153934 Megf11 protein_coding Interval_24191 chr11 31136250 31136684 + 0 NA Intergenic Intergenic 16464 ENSMUSG00000082049.1 ENSMUSG00000082049 ENSMUST00000120846 Gm12105 processed_pseudogene Interval_172055 chr9 124091131 124091660 + 0 NA Intergenic Intergenic -10555 ENSMUSG00000049103.14 ENSMUSG00000049103 ENSMUST00000165984 Ccr2 protein_coding Interval_18423 chr10 85682838 85683165 + 0 NA Intergenic Intergenic -24679 ENSMUSG00000111435.1 ENSMUSG00000111435 ENSMUST00000217622 Gm47358 lincRNA Interval_50996 chr14 21540285 21540866 + 0 NA intron (ENSMUSG00000021767.19, intron 2 of 5) protein_coding-intron (ENSMUSG00000021767.19, intron 2 of 16) 23700 ENSMUSG00000021767.19 ENSMUSG00000021767 ENSMUST00000226589 Kat6b protein_coding Interval_85484 chr19 27385736 27386014 + 0 NA Intergenic Intergenic 19803 ENSMUSG00000117705.1 ENSMUSG00000117705 ENSMUST00000235697 Gm50113 processed_pseudogene Interval_13551 chr10 19432131 19433132 + 0 NA Intergenic Intergenic -62012 ENSMUSG00000110902.1 ENSMUSG00000110902 ENSMUST00000216664 Gm33104 lincRNA Interval_164890 chr9 42857572 42859028 + 0 NA intron (ENSMUSG00000032017.14, intron 1 of 20) protein_coding-intron (ENSMUSG00000032017.14, intron 1 of 20) 3829 ENSMUSG00000076355.2 ENSMUSG00000076355 ENSMUST00000102400 Gm27509 miRNA Interval_76319 chr17 79001961 79003318 + 0 NA intron (ENSMUSG00000024070.15, intron 2 of 18) protein_coding-intron (ENSMUSG00000024070.15, intron 1 of 17) 18177 ENSMUSG00000024070.15 ENSMUSG00000024070 ENSMUST00000130070 Prkd3 protein_coding Interval_43857 chr13 37633803 37634123 + 0 NA TTS (ENSMUSG00000114355.1) lincRNA-TTS (ENSMUSG00000114355.1) -6360 ENSMUSG00000114404.1 ENSMUSG00000114404 ENSMUST00000225437 Gm40915 lincRNA Interval_77452 chr17 88917418 88917672 + 0 NA Intergenic Intergenic -60923 ENSMUSG00000117566.1 ENSMUSG00000117566 ENSMUST00000234561 Gm9407 processed_pseudogene Interval_81442 chr18 60774248 60775726 + 0 NA promoter-TSS (ENSMUSG00000024608.11) protein_coding-promoter-TSS (ENSMUSG00000024608.11) 4407 ENSMUSG00000080779.1 ENSMUSG00000080779 ENSMUST00000118088 Gm8731 processed_pseudogene Interval_90500 chr2 30821561 30824022 + 0 NA TTS (ENSMUSG00000039483.10) protein_coding-TTS (ENSMUSG00000039483.10) 5463 ENSMUSG00000039483.10 ENSMUSG00000039483 ENSMUST00000147414 Asb6 protein_coding Interval_111032 chr4 11328910 11330830 + 0 NA Intergenic Intergenic -7770 ENSMUSG00000045205.16 ENSMUSG00000045205 ENSMUST00000148524 Dpy19l4 protein_coding Interval_141553 chr6 129212113 129212669 + 0 NA TTS (ENSMUSG00000097354.7) lincRNA-TTS (ENSMUSG00000097354.7) -23267 ENSMUSG00000098268.1 ENSMUSG00000098268 ENSMUST00000183692 Gm27514 miRNA Interval_62888 chr15 97745288 97745522 + 0 NA TTS (ENSMUSG00000022469.17) protein_coding-TTS (ENSMUSG00000022469.17) -15003 ENSMUSG00000086601.1 ENSMUSG00000086601 ENSMUST00000149373 Rapgef3os1 antisense Interval_160813 chr8 112661850 112662044 + 0 NA intron (ENSMUSG00000031772.17, intron 2 of 20) protein_coding-intron (ENSMUSG00000031772.17, intron 2 of 23) 80311 ENSMUSG00000089344.1 ENSMUSG00000089344 ENSMUST00000158719 Gm22664 misc_RNA Interval_103944 chr3 55344449 55345082 + 0 NA intron (ENSMUSG00000027797.15, intron 3 of 16) protein_coding-intron (ENSMUSG00000027797.15, intron 3 of 16) 13924 ENSMUSG00000105302.1 ENSMUSG00000105302 ENSMUST00000199764 Gm19817 TEC Interval_95331 chr2 106676942 106678187 + 0 NA Intergenic Intergenic -17656 ENSMUSG00000016386.15 ENSMUSG00000016386 ENSMUST00000133401 Mpped2 protein_coding Interval_43900 chr13 37946622 37947455 + 0 NA promoter-TSS (ENSMUSG00000039087.17) protein_coding-promoter-TSS (ENSMUSG00000039087.17) 22 ENSMUSG00000039087.17 ENSMUSG00000039087 ENSMUST00000162849 Rreb1 protein_coding Interval_154707 chr8 22745507 22745842 + 0 NA Intergenic Intergenic -12121 ENSMUSG00000031538.6 ENSMUSG00000031538 ENSMUST00000211033 Plat protein_coding Interval_48294 chr13 97860554 97861127 + 0 NA Intergenic Intergenic 15822 ENSMUSG00000114474.1 ENSMUSG00000114474 ENSMUST00000225575 Gm34388 lincRNA Interval_173641 chrX 101384555 101385028 + 0 NA exon (ENSMUSG00000047797.14, exon 2 of 2) protein_coding-exon (ENSMUSG00000047797.14, exon 2 of 2) 1055 ENSMUSG00000047797.14 ENSMUSG00000047797 ENSMUST00000119190 Gjb1 protein_coding Interval_16143 chr10 61000907 61002303 + 0 NA Intergenic Intergenic -29698 ENSMUSG00000093568.1 ENSMUSG00000093568 ENSMUST00000177492 Gm20611 lincRNA Interval_173656 chrX 101523695 101524333 + 0 NA Intergenic Intergenic 5029 ENSMUSG00000081674.1 ENSMUSG00000081674 ENSMUST00000120403 Gm6184 processed_pseudogene Interval_146881 chr7 54684045 54684344 + 0 NA Intergenic Intergenic -72996 ENSMUSG00000109050.1 ENSMUSG00000109050 ENSMUST00000207666 Gm6290 processed_pseudogene Interval_129141 chr5 117694792 117695188 + 0 NA intron (ENSMUSG00000061578.8, intron 10 of 20) protein_coding-intron (ENSMUSG00000061578.8, intron 10 of 20) -172129 ENSMUSG00000029361.18 ENSMUSG00000029361 ENSMUST00000138554 Nos1 protein_coding Interval_109000 chr3 134449230 134449448 + 0 NA Intergenic Intergenic -25704 ENSMUSG00000105765.1 ENSMUSG00000105765 ENSMUST00000198231 4930539C22Rik lincRNA Interval_155388 chr8 33138929 33139608 + 0 NA Intergenic Intergenic 53028 ENSMUSG00000083557.1 ENSMUSG00000083557 ENSMUST00000119347 Gm6877 processed_pseudogene Interval_168149 chr9 77529363 77530635 + 0 NA intron (ENSMUSG00000032352.16, intron 1 of 13) protein_coding-intron (ENSMUSG00000032352.16, intron 1 of 13) 14849 ENSMUSG00000032352.16 ENSMUSG00000032352 ENSMUST00000183980 Lrrc1 protein_coding Interval_141903 chr6 135243618 135243882 + 0 NA intron (ENSMUSG00000030206.13, intron 3 of 6) protein_coding-intron (ENSMUSG00000030206.13, intron 2 of 5) 10576 ENSMUSG00000030206.13 ENSMUSG00000030206 ENSMUST00000111910 Gsg1 protein_coding Interval_24742 chr11 36518876 36519060 + 0 NA intron (ENSMUSG00000049336.16, intron 2 of 28) protein_coding-intron (ENSMUSG00000049336.16, intron 2 of 28) -203914 ENSMUSG00000065173.1 ENSMUSG00000065173 ENSMUST00000083239 Gm22127 snRNA Interval_161923 chr8 123787447 123787735 + 0 NA intron (ENSMUSG00000092329.1, intron 1 of 15) protein_coding-intron (ENSMUSG00000092329.1, intron 1 of 15) 20040 ENSMUSG00000110456.1 ENSMUSG00000110456 ENSMUST00000211815 Gm45865 TEC Interval_111516 chr4 22357102 22358456 + 0 NA intron (ENSMUSG00000040410.14, intron 1 of 8) protein_coding-intron (ENSMUSG00000040410.14, intron 1 of 8) 219 ENSMUSG00000040410.14 ENSMUSG00000040410 ENSMUST00000184582 Fbxl4 protein_coding Interval_173491 chrX 95711397 95712481 + 0 NA exon (ENSMUSG00000035045.17, exon 1 of 7) protein_coding-exon (ENSMUSG00000035045.17, exon 1 of 7) 261 ENSMUSG00000035045.17 ENSMUSG00000035045 ENSMUST00000127461 Zc3h12b protein_coding Interval_70061 chr17 5082133 5083002 + 0 NA intron (ENSMUSG00000069729.14, intron 2 of 19) protein_coding-intron (ENSMUSG00000069729.14, intron 2 of 18) 29543 ENSMUSG00000081783.2 ENSMUSG00000081783 ENSMUST00000122283 Gm15599 processed_pseudogene Interval_116750 chr4 117089377 117090300 + 0 NA Intergenic Intergenic -15082 ENSMUSG00000028681.11 ENSMUSG00000028681 ENSMUST00000123226 Ptch2 protein_coding Interval_120593 chr4 149567207 149568054 + 0 NA exon (ENSMUSG00000086949.1, exon 1 of 2) antisense-exon (ENSMUSG00000086949.1, exon 1 of 2) 160 ENSMUSG00000086949.1 ENSMUSG00000086949 ENSMUST00000145263 Gm13066 antisense Interval_69720 chr16 95775395 95777855 + 0 NA intron (ENSMUSG00000117232.1, intron 2 of 4) lincRNA-intron (ENSMUSG00000117232.1, intron 2 of 4) 16789 ENSMUSG00000104172.1 ENSMUSG00000104172 ENSMUST00000193903 Gm37259 TEC Interval_110244 chr3 154770263 154770976 + 0 NA Intergenic Intergenic 58754 ENSMUSG00000078161.8 ENSMUSG00000078161 ENSMUST00000189969 Erich3 protein_coding Interval_55611 chr14 95672482 95672935 + 0 NA Intergenic Intergenic 57272 ENSMUSG00000115679.1 ENSMUSG00000115679 ENSMUST00000228033 Gm48995 processed_pseudogene Interval_111213 chr4 14899268 14900438 + 0 NA intron (ENSMUSG00000028221.3, intron 4 of 6) protein_coding-intron (ENSMUSG00000028221.3, intron 4 of 6) -30823 ENSMUSG00000086587.7 ENSMUSG00000086587 ENSMUST00000152024 Gm11837 antisense Interval_125007 chr5 63766742 63767442 + 0 NA intron (ENSMUSG00000090061.9, intron 4 of 6) protein_coding-intron (ENSMUSG00000090061.9, intron 3 of 6) -33370 ENSMUSG00000090061.9 ENSMUSG00000090061 ENSMUST00000162757 Nwd2 protein_coding Interval_101694 chr3 8980909 8981948 + 0 NA intron (ENSMUSG00000027506.15, intron 1 of 3) protein_coding-intron (ENSMUSG00000027506.15, intron 1 of 6) 23050 ENSMUSG00000027506.15 ENSMUSG00000027506 ENSMUST00000155450 Tpd52 protein_coding Interval_123087 chr5 29560808 29561032 + 0 NA Intergenic Intergenic 22767 ENSMUSG00000078182.4 ENSMUSG00000078182 ENSMUST00000075518 Gm6083 processed_pseudogene Interval_29656 chr11 85848781 85849423 + 0 NA intron (ENSMUSG00000069785.4, intron 1 of 2) protein_coding-intron (ENSMUSG00000069785.4, intron 1 of 2) 1231 ENSMUSG00000069785.4 ENSMUSG00000069785 ENSMUST00000146433 Gm11444 protein_coding Interval_167768 chr9 72627752 72629162 + 0 NA Intergenic Intergenic -4990 ENSMUSG00000064735.1 ENSMUSG00000064735 ENSMUST00000082801 Gm23057 snRNA Interval_12709 chr10 4422241 4423688 + 0 NA exon (ENSMUSG00000085687.1, exon 2 of 2) processed_transcript-exon (ENSMUSG00000085687.1, exon 2 of 2) 9380 ENSMUSG00000019763.11 ENSMUSG00000019763 ENSMUST00000148566 Rmnd1 protein_coding Interval_65875 chr16 29977301 29978140 + 0 NA intron (ENSMUSG00000075286.4, intron 1 of 5) lincRNA-intron (ENSMUSG00000075286.4, intron 1 of 5) 1464 ENSMUSG00000075286.4 ENSMUSG00000075286 ENSMUST00000100016 Gm1968 lincRNA Interval_102363 chr3 22190426 22191036 + 0 NA TTS (ENSMUSG00000027630.13) protein_coding-TTS (ENSMUSG00000027630.13) -60643 ENSMUSG00000087775.1 ENSMUSG00000087775 ENSMUST00000157150 Rprl2 ribozyme Interval_25009 chr11 42999088 42999725 + 0 NA Intergenic Intergenic -36340 ENSMUSG00000055456.1 ENSMUSG00000055456 ENSMUST00000069051 Gm9972 TEC Interval_12313 chr1 191616071 191616969 + 0 NA intron (ENSMUSG00000037461.10, intron 16 of 18) protein_coding-intron (ENSMUSG00000037461.10, intron 17 of 19) 18873 ENSMUSG00000102970.1 ENSMUSG00000102970 ENSMUST00000194205 Gm37349 TEC Interval_82934 chr18 79601949 79602943 + 0 NA Intergenic Intergenic -27086 ENSMUSG00000118130.1 ENSMUSG00000118130 ENSMUST00000237642 Gm50176 processed_pseudogene Interval_10559 chr1 171855979 171856288 + 0 NA intron (ENSMUSG00000038147.13, intron 3 of 8) protein_coding-intron (ENSMUSG00000038147.13, intron 2 of 6) 16436 ENSMUSG00000038147.13 ENSMUSG00000038147 ENSMUST00000042302 Cd84 protein_coding Interval_119405 chr4 137494980 137495893 + 0 NA intron (ENSMUSG00000028763.18, intron 1 of 96) protein_coding-intron (ENSMUSG00000028763.18, intron 1 of 96) -27023 ENSMUSG00000028763.18 ENSMUSG00000028763 ENSMUST00000155648 Hspg2 protein_coding Interval_50917 chr14 20757186 20757975 + 0 NA intron (ENSMUSG00000021820.18, intron 12 of 21) protein_coding-intron (ENSMUSG00000021820.18, intron 12 of 20) -27262 ENSMUSG00000039308.6 ENSMUSG00000039308 ENSMUST00000225320 Ndst2 protein_coding Interval_52619 chr14 48012152 48013350 + 0 NA Intergenic Intergenic 18810 ENSMUSG00000115425.1 ENSMUSG00000115425 ENSMUST00000227352 Gm49305 lincRNA Interval_15353 chr10 45045178 45045875 + 0 NA Intergenic Intergenic 21224 ENSMUSG00000110891.1 ENSMUSG00000110891 ENSMUST00000214642 Gm40639 lincRNA Interval_37509 chr12 69461840 69463344 + 0 NA Intergenic Intergenic 12955 ENSMUSG00000113035.1 ENSMUSG00000113035 ENSMUST00000222980 5830428M24Rik processed_transcript Interval_124745 chr5 53645375 53645643 + 0 NA promoter-TSS (ENSMUSG00000039191.12) protein_coding-promoter-TSS (ENSMUSG00000039191.12) 6877 ENSMUSG00000039191.12 ENSMUSG00000039191 ENSMUST00000202092 Rbpj protein_coding Interval_27821 chr11 70213866 70215807 + 0 NA promoter-TSS (ENSMUSG00000040938.16) protein_coding-promoter-TSS (ENSMUSG00000040938.16) 926 ENSMUSG00000040938.16 ENSMUSG00000040938 ENSMUST00000149880 Slc16a11 protein_coding Interval_56346 chr14 117930256 117932753 + 0 NA intron (ENSMUSG00000058571.11, intron 7 of 9) protein_coding-intron (ENSMUSG00000058571.11, intron 6 of 8) 22343 ENSMUSG00000098648.1 ENSMUSG00000098648 ENSMUST00000183564 Mir6239 miRNA Interval_130698 chr5 129864207 129866070 + 0 NA intron (ENSMUSG00000025537.12, intron 8 of 9) protein_coding-intron (ENSMUSG00000025537.12, intron 8 of 9) 11809 ENSMUSG00000106840.1 ENSMUSG00000106840 ENSMUST00000201268 Gm42790 TEC Interval_77242 chr17 87537864 87538221 + 0 NA Intergenic Intergenic -7298 ENSMUSG00000117361.1 ENSMUSG00000117361 ENSMUST00000234692 Gm30984 lincRNA Interval_148757 chr7 85682723 85683648 + 0 NA Intergenic Intergenic -13171 ENSMUSG00000092567.2 ENSMUSG00000092567 ENSMUST00000173890 Vmn2r-ps73 unprocessed_pseudogene Interval_160849 chr8 113709574 113710152 + 0 NA intron (ENSMUSG00000053399.9, intron 15 of 19) protein_coding-intron (ENSMUSG00000053399.9, intron 18 of 22) -33405 ENSMUSG00000110582.1 ENSMUSG00000110582 ENSMUST00000211951 Gm30052 lincRNA Interval_52587 chr14 47709315 47710498 + 0 NA intron (ENSMUSG00000021843.17, intron 26 of 38) protein_coding-intron (ENSMUSG00000021843.17, intron 27 of 41) 46119 ENSMUSG00000021843.17 ENSMUSG00000021843 ENSMUST00000190857 Ktn1 protein_coding Interval_115574 chr4 100944322 100944541 + 0 NA intron (ENSMUSG00000028532.14, intron 4 of 26) protein_coding-intron (ENSMUSG00000028532.14, intron 4 of 26) -50279 ENSMUSG00000028532.14 ENSMUSG00000028532 ENSMUST00000136430 Cachd1 protein_coding Interval_24236 chr11 31694239 31694511 + 0 NA Intergenic Intergenic -4273 ENSMUSG00000103635.1 ENSMUSG00000103635 ENSMUST00000192490 Gm38061 TEC Interval_115508 chr4 99583998 99584673 + 0 NA Intergenic Intergenic 14835 ENSMUSG00000087332.1 ENSMUSG00000087332 ENSMUST00000132108 Gm12690 lincRNA Interval_162177 chr8 125716458 125716753 + 0 NA Intergenic Intergenic -19230 ENSMUSG00000031851.14 ENSMUSG00000031851 ENSMUST00000152189 Ntpcr protein_coding Interval_42714 chr13 18465984 18466571 + 0 NA Intergenic Intergenic -68591 ENSMUSG00000009734.18 ENSMUSG00000009734 ENSMUST00000222900 Pou6f2 protein_coding Interval_48948 chr13 105442737 105445438 + 0 NA exon (ENSMUSG00000021721.5, exon 1 of 1) protein_coding-exon (ENSMUSG00000021721.5, exon 1 of 1) 448 ENSMUSG00000021721.5 ENSMUSG00000021721 ENSMUST00000022235 Htr1a protein_coding Interval_173015 chrX 63036726 63036913 + 0 NA Intergenic Intergenic -1713 ENSMUSG00000082965.1 ENSMUSG00000082965 ENSMUST00000117124 Gm6754 processed_pseudogene Interval_82885 chr18 78225309 78226437 + 0 NA intron (ENSMUSG00000024552.16, intron 3 of 21) protein_coding-intron (ENSMUSG00000024552.16, intron 3 of 11) -83754 ENSMUSG00000059336.14 ENSMUSG00000059336 ENSMUST00000160639 Slc14a1 protein_coding Interval_9773 chr1 162047574 162047817 + 0 NA intron (ENSMUSG00000040265.16, intron 16 of 20) protein_coding-intron (ENSMUSG00000040265.16, intron 16 of 19) 40773 ENSMUSG00000102994.1 ENSMUSG00000102994 ENSMUST00000193239 Gm37767 TEC Interval_154682 chr8 22573649 22573936 + 0 NA Intergenic Intergenic 12329 ENSMUSG00000008892.12 ENSMUSG00000008892 ENSMUST00000211222 Vdac3 protein_coding Interval_169459 chr9 97632111 97632312 + 0 NA intron (ENSMUSG00000032452.12, intron 2 of 16) protein_coding-intron (ENSMUSG00000032452.12, intron 2 of 17) -192584 ENSMUSG00000077208.1 ENSMUSG00000077208 ENSMUST00000104020 Gm25607 snoRNA Interval_73131 chr17 34984258 34984458 + 0 NA promoter-TSS (ENSMUSG00000007050.17) protein_coding-promoter-TSS (ENSMUSG00000007050.17) 2189 ENSMUSG00000007050.17 ENSMUSG00000007050 ENSMUST00000172666 Lsm2 protein_coding Interval_138641 chr6 90660480 90661588 + 0 NA TTS (ENSMUSG00000034312.15) protein_coding-TTS (ENSMUSG00000034312.15) 20486 ENSMUSG00000093052.2 ENSMUSG00000093052 ENSMUST00000175311 Gm24816 miRNA Interval_11849 chr1 186253970 186256060 + 0 NA Intergenic Intergenic 72758 ENSMUSG00000102790.1 ENSMUSG00000102790 ENSMUST00000193401 Gm37272 TEC Interval_50382 chr14 12308180 12308362 + 0 NA intron (ENSMUSG00000114378.1, intron 6 of 6) protein_coding-intron (ENSMUSG00000114378.1, intron 6 of 6) -13108 ENSMUSG00000114853.1 ENSMUSG00000114853 ENSMUST00000225919 D030051J21Rik lincRNA Interval_69916 chr17 3189674 3189862 + 0 NA intron (ENSMUSG00000046201.9, intron 15 of 19) protein_coding-intron (ENSMUSG00000046201.9, intron 15 of 19) -41503 ENSMUSG00000116858.1 ENSMUSG00000116858 ENSMUST00000232042 Gm49797 lincRNA Interval_41375 chr12 113155488 113157034 + 0 NA promoter-TSS (ENSMUSG00000037466.13) protein_coding-promoter-TSS (ENSMUSG00000037466.13) -245 ENSMUSG00000037466.13 ENSMUSG00000037466 ENSMUST00000198072 Tedc1 protein_coding Interval_37440 chr12 68841795 68842045 + 0 NA Intergenic Intergenic -29623 ENSMUSG00000112933.1 ENSMUSG00000112933 ENSMUST00000223294 Gm47491 processed_pseudogene Interval_86696 chr19 42728312 42728532 + 0 NA intron (ENSMUSG00000060224.4, intron 14 of 15) protein_coding-intron (ENSMUSG00000060224.4, intron 14 of 15) -17349 ENSMUSG00000118354.1 ENSMUSG00000118354 ENSMUST00000236540 Gm19437 antisense Interval_37234 chr12 61826479 61826738 + 0 NA intron (ENSMUSG00000035653.16, intron 2 of 5) protein_coding-intron (ENSMUSG00000035653.16, intron 2 of 3) -29660 ENSMUSG00000035653.16 ENSMUSG00000035653 ENSMUST00000189933 Lrfn5 protein_coding Interval_61424 chr15 81539692 81540236 + 0 NA Intergenic Intergenic -40419 ENSMUSG00000091198.2 ENSMUSG00000091198 ENSMUST00000172270 Gm5218 processed_pseudogene Interval_6944 chr1 121176935 121177139 + 0 NA intron (ENSMUSG00000097881.7, intron 2 of 2) lincRNA-intron (ENSMUSG00000097881.7, intron 2 of 2) -47239 ENSMUSG00000101700.1 ENSMUSG00000101700 ENSMUST00000191007 Gm29359 lincRNA Interval_35495 chr12 23073673 23074146 + 0 NA Intergenic Intergenic 19484 ENSMUSG00000113751.1 ENSMUSG00000113751 ENSMUST00000223096 Gm9293 unprocessed_pseudogene Interval_62861 chr15 97466267 97467308 + 0 NA Intergenic Intergenic 91503 ENSMUSG00000116131.1 ENSMUSG00000116131 ENSMUST00000230522 Gm49506 processed_pseudogene Interval_93588 chr2 74680830 74683942 + 0 NA promoter-TSS (ENSMUSG00000042499.13) protein_coding-promoter-TSS (ENSMUSG00000042499.13) 63 ENSMUSG00000042499.13 ENSMUSG00000042499 ENSMUST00000142312 Hoxd11 protein_coding Interval_113788 chr4 58610709 58612051 + 0 NA exon (ENSMUSG00000083145.1, exon 1 of 1) processed_pseudogene-exon (ENSMUSG00000083145.1, exon 1 of 1) 322 ENSMUSG00000083145.1 ENSMUSG00000083145 ENSMUST00000118040 Gm12579 processed_pseudogene Interval_173529 chrX 98764968 98765538 + 0 NA intron (ENSMUSG00000031214.13, intron 4 of 7) protein_coding-intron (ENSMUSG00000031214.13, intron 4 of 24) -37841 ENSMUSG00000099037.1 ENSMUSG00000099037 ENSMUST00000185074 Gm27554 miRNA Interval_95391 chr2 107885205 107886625 + 0 NA TTS (ENSMUSG00000077480.1) snoRNA-TTS (ENSMUSG00000077480.1) 724 ENSMUSG00000077480.1 ENSMUSG00000077480 ENSMUST00000104292 Gm23439 snoRNA Interval_116305 chr4 109550886 109551189 + 0 NA Intergenic Intergenic 13998 ENSMUSG00000077687.1 ENSMUSG00000077687 ENSMUST00000104499 Gm22497 snoRNA Interval_110852 chr4 8993882 8994407 + 0 NA Intergenic Intergenic 52885 ENSMUSG00000083786.1 ENSMUSG00000083786 ENSMUST00000119493 Rps18-ps2 processed_pseudogene Interval_155043 chr8 25920271 25921572 + 0 NA intron (ENSMUSG00000031576.16, intron 5 of 5) protein_coding-intron (ENSMUSG00000031576.16, intron 23 of 26) 53132 ENSMUSG00000037260.8 ENSMUSG00000037260 ENSMUST00000209420 Hgsnat protein_coding Interval_134766 chr6 31317665 31319060 + 0 NA intron (ENSMUSG00000087380.7, intron 2 of 3) processed_transcript-intron (ENSMUSG00000087380.7, intron 3 of 6) 25828 ENSMUSG00000087380.7 ENSMUSG00000087380 ENSMUST00000124811 2210408F21Rik processed_transcript Interval_110791 chr4 8423745 8424395 + 0 NA Intergenic Intergenic 30177 ENSMUSG00000103127.1 ENSMUSG00000103127 ENSMUST00000194755 Gm37386 TEC Interval_68549 chr16 78561144 78564503 + 0 NA intron (ENSMUSG00000116628.1, intron 2 of 2) protein_coding-intron (ENSMUSG00000022864.14, intron 2 of 4) 2507 ENSMUSG00000116628.1 ENSMUSG00000116628 ENSMUST00000231846 4930478L05Rik antisense Interval_12307 chr1 191557859 191558436 + 0 NA intron (ENSMUSG00000037474.13, intron 7 of 14) protein_coding-intron (ENSMUSG00000037474.13, intron 7 of 14) 17367 ENSMUSG00000037474.13 ENSMUSG00000037474 ENSMUST00000192014 Dtl protein_coding Interval_66875 chr16 38253724 38254646 + 0 NA intron (ENSMUSG00000022809.4, intron 3 of 8) protein_coding-intron (ENSMUSG00000022809.4, intron 3 of 8) 40639 ENSMUSG00000022809.4 ENSMUSG00000022809 ENSMUST00000023504 Nr1i2 protein_coding Interval_126590 chr5 90542588 90543079 + 0 NA intron (ENSMUSG00000029369.17, intron 8 of 9) protein_coding-intron (ENSMUSG00000029369.17, intron 8 of 14) -16016 ENSMUSG00000106705.1 ENSMUSG00000106705 ENSMUST00000202112 Gm2602 processed_pseudogene Interval_149045 chr7 92646951 92647301 + 0 NA intron (ENSMUSG00000041328.16, intron 9 of 12) protein_coding-intron (ENSMUSG00000041328.16, intron 12 of 15) 7177 ENSMUSG00000102555.1 ENSMUSG00000102555 ENSMUST00000192772 6430511E19Rik TEC Interval_152514 chr7 133718330 133719165 + 0 NA intron (ENSMUSG00000030983.4, intron 4 of 5) protein_coding-intron (ENSMUSG00000030983.4, intron 5 of 6) 9399 ENSMUSG00000030983.4 ENSMUSG00000030983 ENSMUST00000140472 Bccip protein_coding Interval_24250 chr11 31793823 31794530 + 0 NA intron (ENSMUSG00000085772.7, intron 3 of 3) lincRNA-intron (ENSMUSG00000085772.7, intron 3 of 3) 30348 ENSMUSG00000085772.7 ENSMUSG00000085772 ENSMUST00000126265 D630024D03Rik lincRNA Interval_132261 chr5 143696054 143696661 + 0 NA intron (ENSMUSG00000018001.18, intron 5 of 12) protein_coding-intron (ENSMUSG00000018001.18, intron 5 of 12) 31660 ENSMUSG00000051306.7 ENSMUSG00000051306 ENSMUST00000129606 Usp42 protein_coding Interval_91311 chr2 37689295 37689864 + 0 NA intron (ENSMUSG00000026915.16, intron 1 of 2) protein_coding-intron (ENSMUSG00000026915.16, intron 1 of 17) -1295 ENSMUSG00000092958.1 ENSMUSG00000092958 ENSMUST00000175217 Mir5128 miRNA Interval_72986 chr17 33978348 33979235 + 0 NA promoter-TSS (ENSMUSG00000067203.8) transcribed_unprocessed_pseudogene-promoter-TSS (ENSMUSG00000067203.8) 36 ENSMUSG00000067203.8 ENSMUSG00000067203 ENSMUST00000174250 H2-K2 transcribed_unprocessed_pseudogene Interval_105530 chr3 87376960 87378390 + 0 NA intron (ENSMUSG00000059994.10, intron 1 of 10) protein_coding-intron (ENSMUSG00000059994.10, intron 1 of 9) 1215 ENSMUSG00000059994.10 ENSMUSG00000059994 ENSMUST00000193854 Fcrl1 protein_coding Interval_169471 chr9 97826207 97826772 + 0 NA intron (ENSMUSG00000032452.12, intron 1 of 16) protein_coding-intron (ENSMUSG00000032452.12, intron 1 of 17) 103666 ENSMUSG00000104462.1 ENSMUSG00000104462 ENSMUST00000191863 Gm37661 TEC Interval_1517 chr1 24633473 24633916 + 0 NA Intergenic Intergenic -17497 ENSMUSG00000101249.1 ENSMUSG00000101249 ENSMUST00000187117 Gm29216 unprocessed_pseudogene Interval_69336 chr16 92305706 92306248 + 0 NA intron (ENSMUSG00000051989.11, intron 2 of 2) protein_coding-intron (ENSMUSG00000051989.11, intron 2 of 3) 4681 ENSMUSG00000051989.11 ENSMUSG00000051989 ENSMUST00000118064 Smim11 protein_coding Interval_129837 chr5 122659953 122660559 + 0 NA intron (ENSMUSG00000029468.17, intron 5 of 12) protein_coding-intron (ENSMUSG00000029468.17, intron 5 of 12) 9832 ENSMUSG00000029468.17 ENSMUSG00000029468 ENSMUST00000197042 P2rx7 protein_coding Interval_85622 chr19 29124625 29125943 + 0 NA intron (ENSMUSG00000024785.7, intron 5 of 8) protein_coding-intron (ENSMUSG00000024785.7, intron 5 of 8) -9995 ENSMUSG00000065556.1 ENSMUSG00000065556 ENSMUST00000083622 Mir101b miRNA Interval_155112 chr8 26675722 26675962 + 0 NA Intergenic Intergenic -7536 ENSMUSG00000109680.1 ENSMUSG00000109680 ENSMUST00000211305 Gm32098 lincRNA Interval_57264 chr15 8233654 8234742 + 0 NA intron (ENSMUSG00000039801.7, intron 38 of 52) protein_coding-intron (ENSMUSG00000039801.7, intron 38 of 52) 11055 ENSMUSG00000039801.7 ENSMUSG00000039801 ENSMUST00000128772 Cplane1 protein_coding Interval_19833 chr10 109920755 109921506 + 0 NA intron (ENSMUSG00000020181.18, intron 3 of 40) protein_coding-intron (ENSMUSG00000020181.18, intron 1 of 38) 116649 ENSMUSG00000102410.1 ENSMUSG00000102410 ENSMUST00000192526 Gm36935 TEC Interval_120414 chr4 148458541 148458772 + 0 NA exon (ENSMUSG00000028991.15, exon 7 of 58) protein_coding-exon (ENSMUSG00000028991.15, exon 7 of 58) -13895 ENSMUSG00000047719.2 ENSMUSG00000047719 ENSMUST00000156686 Ubiad1 protein_coding Interval_151362 chr7 121768968 121769572 + 0 NA TTS (ENSMUSG00000000216.8) protein_coding-TTS (ENSMUSG00000000216.8) 34791 ENSMUSG00000000216.8 ENSMUSG00000000216 ENSMUST00000000221 Scnn1g protein_coding Interval_118099 chr4 128947032 128948448 + 0 NA intron (ENSMUSG00000028789.16, intron 4 of 5) protein_coding-intron (ENSMUSG00000028789.16, intron 7 of 10) 11735 ENSMUSG00000085961.1 ENSMUSG00000085961 ENSMUST00000154515 Gm15904 antisense Interval_67674 chr16 55883043 55883294 + 0 NA TTS (ENSMUSG00000116919.1) processed_pseudogene-TTS (ENSMUSG00000116919.1) 1323 ENSMUSG00000116919.1 ENSMUSG00000116919 ENSMUST00000232524 Gm17809 processed_pseudogene Interval_118517 chr4 132218060 132219436 + 0 NA promoter-TSS (ENSMUSG00000080597.2) miRNA-promoter-TSS (ENSMUSG00000080597.2) -220 ENSMUSG00000080597.2 ENSMUSG00000080597 ENSMUST00000116947 Gm22033 miRNA Interval_141503 chr6 128702335 128702517 + 0 NA Intergenic Intergenic 5375 ENSMUSG00000079299.3 ENSMUSG00000079299 ENSMUST00000112110 Klrb1 protein_coding Interval_40998 chr12 110518610 110519714 + 0 NA intron (ENSMUSG00000017843.14, intron 1 of 11) protein_coding-intron (ENSMUSG00000017843.14, intron 1 of 13) -33546 ENSMUSG00000113585.1 ENSMUSG00000113585 ENSMUST00000222863 Gm19605 processed_transcript Interval_151434 chr7 122404327 122405178 + 0 NA exon (ENSMUSG00000108317.1, exon 1 of 1) TEC-exon (ENSMUSG00000108317.1, exon 1 of 1) 2297 ENSMUSG00000108317.1 ENSMUSG00000108317 ENSMUST00000206898 Gm44663 TEC Interval_28913 chr11 79237311 79239354 + 0 NA Intergenic Intergenic 4617 ENSMUSG00000017677.11 ENSMUSG00000017677 ENSMUST00000137890 Wsb1 protein_coding Interval_951 chr1 13360468 13361264 + 0 NA intron (ENSMUSG00000005886.14, intron 1 of 12) protein_coding-intron (ENSMUSG00000005886.14, intron 1 of 22) -4136 ENSMUSG00000102664.1 ENSMUSG00000102664 ENSMUST00000195718 Gm38380 TEC Interval_161192 chr8 118408781 118410496 + 0 NA intron (ENSMUSG00000031841.19, intron 2 of 8) protein_coding-intron (ENSMUSG00000031841.19, intron 1 of 13) 16961 ENSMUSG00000064801.1 ENSMUSG00000064801 ENSMUST00000082867 Gm24035 snRNA Interval_137923 chr6 83393680 83393851 + 0 NA intron (ENSMUSG00000034832.15, intron 4 of 11) protein_coding-intron (ENSMUSG00000034832.15, intron 3 of 10) 7337 ENSMUSG00000099045.1 ENSMUSG00000099045 ENSMUST00000184003 Mir6374 miRNA Interval_132207 chr5 143346219 143347658 + 0 NA Intergenic Intergenic 12303 ENSMUSG00000104875.1 ENSMUSG00000104875 ENSMUST00000196422 Gm43397 lincRNA Interval_64855 chr16 16584412 16585268 + 0 NA intron (ENSMUSG00000022788.16, intron 1 of 8) protein_coding-intron (ENSMUSG00000022788.16, intron 1 of 8) -24794 ENSMUSG00000022788.16 ENSMUSG00000022788 ENSMUST00000161624 Fgd4 protein_coding Interval_22259 chr11 8386584 8386785 + 0 NA Intergenic Intergenic -2831 ENSMUSG00000083553.1 ENSMUSG00000083553 ENSMUST00000117240 Gm11989 processed_pseudogene Interval_157445 chr8 70415639 70416142 + 0 NA intron (ENSMUSG00000003575.13, intron 1 of 13) protein_coding-intron (ENSMUSG00000003575.13, intron 1 of 13) 15395 ENSMUSG00000003575.13 ENSMUSG00000003575 ENSMUST00000153632 Crtc1 protein_coding Interval_153833 chr8 9393186 9393519 + 0 NA intron (ENSMUSG00000079157.4, intron 1 of 3) protein_coding-intron (ENSMUSG00000079157.4, intron 1 of 2) -18026 ENSMUSG00000109385.1 ENSMUSG00000109385 ENSMUST00000208080 Gm44518 TEC Interval_149701 chr7 100774034 100774696 + 0 NA intron (ENSMUSG00000029461.17, intron 2 of 8) protein_coding-intron (ENSMUSG00000029461.17, intron 2 of 8) -12010 ENSMUSG00000029461.17 ENSMUSG00000029461 ENSMUST00000216021 Fam168a protein_coding Interval_11358 chr1 181188815 181189472 + 0 NA intron (ENSMUSG00000038733.14, intron 7 of 13) protein_coding-intron (ENSMUSG00000038733.14, intron 7 of 13) 22858 ENSMUSG00000038733.14 ENSMUSG00000038733 ENSMUST00000161531 Wdr26 protein_coding Interval_102409 chr3 24822479 24823540 + 0 NA intron (ENSMUSG00000102758.3, intron 2 of 2) protein_coding-intron (ENSMUSG00000102758.3, intron 2 of 2) 104293 ENSMUSG00000088115.1 ENSMUSG00000088115 ENSMUST00000157490 Gm24062 misc_RNA Interval_73921 chr17 45494361 45496164 + 0 NA Intergenic Intergenic -18967 ENSMUSG00000023938.8 ENSMUSG00000023938 ENSMUST00000232693 Aars2 protein_coding Interval_156048 chr8 43204461 43204661 + 0 NA Intergenic Intergenic 4593 ENSMUSG00000109974.1 ENSMUSG00000109974 ENSMUST00000209342 Gm2221 processed_pseudogene Interval_95538 chr2 112000314 112002148 + 0 NA TTS (ENSMUSG00000081037.3) transcribed_processed_pseudogene-TTS (ENSMUSG00000081037.3) 1051 ENSMUSG00000081037.3 ENSMUSG00000081037 ENSMUST00000117553 Gm13929 transcribed_processed_pseudogene Interval_93126 chr2 70446702 70446920 + 0 NA Intergenic Intergenic -12171 ENSMUSG00000047965.9 ENSMUSG00000047965 ENSMUST00000140507 Rpl9-ps7 processed_pseudogene Interval_111640 chr4 25030520 25030728 + 0 NA intron (ENSMUSG00000085885.1, intron 1 of 4) processed_transcript-intron (ENSMUSG00000085885.1, intron 1 of 4) -63175 ENSMUSG00000046219.9 ENSMUSG00000046219 ENSMUST00000139588 C230012O17Rik processed_transcript Interval_147428 chr7 66967868 66968216 + 0 NA intron (ENSMUSG00000058145.16, intron 8 of 8) protein_coding-intron (ENSMUSG00000058145.16, intron 7 of 22) -6124 ENSMUSG00000109079.1 ENSMUSG00000109079 ENSMUST00000207830 Gm44755 TEC Interval_59998 chr15 63612664 63612873 + 0 NA intron (ENSMUSG00000115520.2, intron 2 of 8) lincRNA-intron (ENSMUSG00000115520.2, intron 2 of 8) -18929 ENSMUSG00000095812.1 ENSMUSG00000095812 ENSMUST00000179326 Gm5473 processed_pseudogene Interval_123531 chr5 33270694 33271049 + 0 NA intron (ENSMUSG00000037373.12, intron 1 of 6) protein_coding-intron (ENSMUSG00000037373.12, intron 1 of 8) 4110 ENSMUSG00000037373.12 ENSMUSG00000037373 ENSMUST00000202190 Ctbp1 protein_coding Interval_125719 chr5 73553030 73553332 + 0 NA intron (ENSMUSG00000051674.15, intron 8 of 9) protein_coding-intron (ENSMUSG00000051674.15, intron 8 of 10) 60525 ENSMUSG00000051674.15 ENSMUSG00000051674 ENSMUST00000136268 Dcun1d4 protein_coding Interval_74778 chr17 56496186 56496425 + 0 NA Intergenic Intergenic 16126 ENSMUSG00000044526.3 ENSMUSG00000044526 ENSMUST00000052211 Znrf4 protein_coding Interval_114732 chr4 84540254 84540558 + 0 NA intron (ENSMUSG00000028487.18, intron 3 of 6) protein_coding-intron (ENSMUSG00000028487.18, intron 3 of 7) -111282 ENSMUSG00000083743.1 ENSMUSG00000083743 ENSMUST00000119071 Gm12421 processed_pseudogene Interval_106342 chr3 95506879 95507120 + 0 NA exon (ENSMUSG00000028111.4, exon 7 of 8) protein_coding-exon (ENSMUSG00000028111.4, exon 7 of 8) 7743 ENSMUSG00000028111.4 ENSMUSG00000028111 ENSMUST00000015664 Ctsk protein_coding Interval_150885 chr7 116181335 116182124 + 0 NA intron (ENSMUSG00000045659.18, intron 4 of 18) protein_coding-intron (ENSMUSG00000045659.18, intron 2 of 24) -52204 ENSMUSG00000045659.18 ENSMUSG00000045659 ENSMUST00000205446 Plekha7 protein_coding Interval_159142 chr8 91014263 91014686 + 0 NA intron (ENSMUSG00000056608.14, intron 21 of 37) protein_coding-intron (ENSMUSG00000056608.14, intron 23 of 39) -40790 ENSMUSG00000110377.1 ENSMUSG00000110377 ENSMUST00000210196 Gm45363 TEC Interval_164349 chr9 35574153 35574737 + 0 NA promoter-TSS (ENSMUSG00000086984.4) processed_pseudogene-promoter-TSS (ENSMUSG00000086984.4) -45 ENSMUSG00000086984.4 ENSMUSG00000086984 ENSMUST00000121769 Gm6762 processed_pseudogene Interval_164092 chr9 31431370 31432980 + 0 NA intron (ENSMUSG00000041737.8, intron 1 of 5) protein_coding-intron (ENSMUSG00000041737.8, intron 1 of 5) 2532 ENSMUSG00000111548.1 ENSMUSG00000111548 ENSMUST00000213951 Gm8162 processed_pseudogene Interval_141888 chr6 135154438 135154875 + 0 NA TTS (ENSMUSG00000042770.8) protein_coding-TTS (ENSMUSG00000042770.8) 6008 ENSMUSG00000088372.1 ENSMUSG00000088372 ENSMUST00000157747 Gm22881 snoRNA Interval_46466 chr13 66374781 66375576 + 0 NA intron (ENSMUSG00000094499.3, intron 2 of 9) lincRNA-intron (ENSMUSG00000114616.1, intron 2 of 2) 18145 ENSMUSG00000114377.1 ENSMUSG00000114377 ENSMUST00000224771 Gm48247 processed_pseudogene Interval_62131 chr15 87664821 87665205 + 0 NA intron (ENSMUSG00000054863.9, intron 1 of 3) protein_coding-intron (ENSMUSG00000054863.9, intron 1 of 3) 120714 ENSMUSG00000054863.9 ENSMUSG00000054863 ENSMUST00000068088 Tafa5 protein_coding Interval_155424 chr8 33492077 33493321 + 0 NA Intergenic Intergenic 8503 ENSMUSG00000109750.1 ENSMUSG00000109750 ENSMUST00000210634 Hmgb1-rs17 unprocessed_pseudogene Interval_870 chr1 12821673 12822266 + 0 NA intron (ENSMUSG00000016918.15, intron 11 of 11) protein_coding-intron (ENSMUSG00000016918.15, intron 11 of 21) 102505 ENSMUSG00000016918.15 ENSMUSG00000016918 ENSMUST00000185780 Sulf1 protein_coding Interval_166436 chr9 59458142 59459629 + 0 NA intron (ENSMUSG00000025234.11, intron 1 of 13) protein_coding-intron (ENSMUSG00000025234.11, intron 1 of 11) 13348 ENSMUSG00000090516.1 ENSMUSG00000090516 ENSMUST00000171632 Rps11-ps1 processed_pseudogene Interval_38917 chr12 83791802 83792043 + 0 NA exon (ENSMUSG00000021223.13, exon 27 of 27) protein_coding-exon (ENSMUSG00000021223.13, exon 27 of 27) 28260 ENSMUSG00000021223.13 ENSMUSG00000021223 ENSMUST00000152904 Papln protein_coding Interval_44874 chr13 49282200 49282429 + 0 NA intron (ENSMUSG00000037946.11, intron 6 of 17) protein_coding-intron (ENSMUSG00000037946.11, intron 6 of 17) 26926 ENSMUSG00000037946.11 ENSMUSG00000037946 ENSMUST00000110086 Fgd3 protein_coding Interval_38531 chr12 79911034 79911672 + 0 NA Intergenic Intergenic 14141 ENSMUSG00000112765.1 ENSMUSG00000112765 ENSMUST00000219857 9430078K24Rik lincRNA Interval_81285 chr18 57384211 57386857 + 0 NA exon (ENSMUSG00000024594.9, exon 2 of 2) protein_coding-exon (ENSMUSG00000024594.9, exon 2 of 2) -19881 ENSMUSG00000117864.1 ENSMUSG00000117864 ENSMUST00000238028 Gm19500 processed_transcript Interval_50765 chr14 19318272 19318474 + 0 NA Intergenic Intergenic -25844 ENSMUSG00000114877.1 ENSMUSG00000114877 ENSMUST00000224681 Gm33022 unprocessed_pseudogene Interval_134588 chr6 29784348 29784828 + 0 NA intron (ENSMUSG00000029772.17, intron 1 of 1) protein_coding-intron (ENSMUSG00000029772.17, intron 1 of 16) 33827 ENSMUSG00000081564.1 ENSMUSG00000081564 ENSMUST00000119868 Gm13717 processed_pseudogene Interval_7745 chr1 133387825 133388140 + 0 NA intron (ENSMUSG00000070643.11, intron 7 of 13) protein_coding-intron (ENSMUSG00000070643.11, intron 6 of 12) 22218 ENSMUSG00000070644.13 ENSMUSG00000070644 ENSMUST00000131450 Etnk2 protein_coding Interval_135890 chr6 48457931 48458174 + 0 NA intron (ENSMUSG00000029797.13, intron 20 of 102) protein_coding-intron (ENSMUSG00000029797.13, intron 18 of 99) 9823 ENSMUSG00000029797.13 ENSMUSG00000029797 ENSMUST00000188970 Sspo protein_coding Interval_55422 chr14 87082083 87082660 + 0 NA intron (ENSMUSG00000022021.14, intron 3 of 3) protein_coding-intron (ENSMUSG00000022021.14, intron 3 of 27) 58864 ENSMUSG00000022021.14 ENSMUSG00000022021 ENSMUST00000226134 Diaph3 protein_coding Interval_117788 chr4 126233624 126234380 + 0 NA promoter-TSS (ENSMUSG00000028849.17) protein_coding-promoter-TSS (ENSMUSG00000028849.17) -454 ENSMUSG00000028849.17 ENSMUSG00000028849 ENSMUST00000131579 Map7d1 protein_coding Interval_68120 chr16 65389588 65389982 + 0 NA Intergenic Intergenic -42352 ENSMUSG00000095094.1 ENSMUSG00000095094 ENSMUST00000102245 Gm23659 miRNA Interval_80366 chr18 40207149 40207609 + 0 NA intron (ENSMUSG00000024487.5, intron 5 of 5) protein_coding-intron (ENSMUSG00000024487.5, intron 5 of 5) 11964 ENSMUSG00000024487.5 ENSMUSG00000024487 ENSMUST00000237176 Yipf5 protein_coding Interval_38958 chr12 84107906 84108358 + 0 NA intron (ENSMUSG00000043487.4, intron 2 of 2) protein_coding-intron (ENSMUSG00000043487.4, intron 2 of 2) -6258 ENSMUSG00000042523.12 ENSMUSG00000042523 ENSMUST00000140812 Dnal1 protein_coding Interval_111504 chr4 22259915 22260169 + 0 NA Intergenic Intergenic -15791 ENSMUSG00000083376.1 ENSMUSG00000083376 ENSMUST00000121463 Gm11882 processed_pseudogene Interval_44754 chr13 48254859 48255274 + 0 NA intron (ENSMUSG00000114860.1, intron 1 of 1) antisense-intron (ENSMUSG00000097622.2, intron 1 of 2) -6162 ENSMUSG00000021379.2 ENSMUSG00000021379 ENSMUST00000021810 Id4 protein_coding Interval_80184 chr18 38081022 38083590 + 0 NA Intergenic Intergenic 58777 ENSMUSG00000118056.1 ENSMUSG00000118056 ENSMUST00000236681 Gm30093 lincRNA Interval_170675 chr9 110025677 110026931 + 0 NA intron (ENSMUSG00000032479.15, intron 1 of 2) protein_coding-intron (ENSMUSG00000032479.15, intron 4 of 18) -14876 ENSMUSG00000105962.1 ENSMUSG00000105962 ENSMUST00000197902 Gm42432 TEC Interval_116334 chr4 109924322 109924624 + 0 NA intron (ENSMUSG00000010517.7, intron 5 of 5) protein_coding-intron (ENSMUSG00000010517.7, intron 15 of 18) 53340 ENSMUSG00000085256.1 ENSMUSG00000085256 ENSMUST00000124754 Dmrta2os antisense Interval_17070 chr10 71106436 71107237 + 0 NA intron (ENSMUSG00000014329.14, intron 1 of 20) protein_coding-intron (ENSMUSG00000014329.14, intron 1 of 21) 23960 ENSMUSG00000090212.1 ENSMUSG00000090212 ENSMUST00000160178 Gm15647 antisense Interval_137786 chr6 82457932 82458223 + 0 NA intron (ENSMUSG00000030043.11, intron 1 of 4) protein_coding-intron (ENSMUSG00000030043.11, intron 2 of 5) 55743 ENSMUSG00000030043.11 ENSMUSG00000030043 ENSMUST00000203775 Tacr1 protein_coding Interval_120829 chr4 150893025 150893378 + 0 NA Intergenic Intergenic 16627 ENSMUSG00000028964.14 ENSMUSG00000028964 ENSMUST00000146184 Park7 protein_coding Interval_67836 chr16 57591888 57594411 + 0 NA intron (ENSMUSG00000022748.8, intron 1 of 1) protein_coding-intron (ENSMUSG00000022748.8, intron 1 of 9) 13715 ENSMUSG00000022748.8 ENSMUSG00000022748 ENSMUST00000232413 Cmss1 protein_coding Interval_73496 chr17 38026025 38027043 + 0 NA Intergenic Intergenic 16887 ENSMUSG00000092390.1 ENSMUSG00000092390 ENSMUST00000173035 Gm20541 unprocessed_pseudogene Interval_91408 chr2 38608675 38609023 + 0 NA intron (ENSMUSG00000026750.6, intron 6 of 7) protein_coding-intron (ENSMUSG00000026750.6, intron 6 of 7) -13952 ENSMUSG00000082931.1 ENSMUSG00000082931 ENSMUST00000121784 Gm13586 processed_pseudogene Interval_57215 chr15 7878801 7879318 + 0 NA intron (ENSMUSG00000039828.7, intron 2 of 2) protein_coding-intron (ENSMUSG00000039828.7, intron 17 of 17) 68213 ENSMUSG00000022144.4 ENSMUSG00000022144 ENSMUST00000022744 Gdnf protein_coding Interval_39114 chr12 85175818 85176154 + 0 NA exon (ENSMUSG00000004791.7, exon 1 of 7) protein_coding-exon (ENSMUSG00000004791.7, exon 1 of 7) 1804 ENSMUSG00000004791.7 ENSMUSG00000004791 ENSMUST00000222850 Pgf protein_coding Interval_113171 chr4 48856536 48856975 + 0 NA Intergenic Intergenic -39744 ENSMUSG00000077417.1 ENSMUSG00000077417 ENSMUST00000104229 Gm23746 snoRNA Interval_110278 chr3 155637926 155638252 + 0 NA Intergenic Intergenic 117151 ENSMUSG00000103981.1 ENSMUSG00000103981 ENSMUST00000193016 Gm37449 processed_pseudogene Interval_38201 chr12 76345173 76345548 + 0 NA promoter-TSS (ENSMUSG00000112096.1) TEC-promoter-TSS (ENSMUSG00000112096.1) 21 ENSMUSG00000112096.1 ENSMUSG00000112096 ENSMUST00000220077 A430103D13Rik TEC Interval_20525 chr10 118484697 118485028 + 0 NA Intergenic Intergenic 43443 ENSMUSG00000111913.1 ENSMUSG00000111913 ENSMUST00000219775 Gm49751 TEC Interval_130228 chr5 125086985 125087209 + 0 NA intron (ENSMUSG00000106663.1, intron 1 of 1) protein_coding-intron (ENSMUSG00000029478.16, intron 9 of 45) 256 ENSMUSG00000106663.1 ENSMUSG00000106663 ENSMUST00000198978 Gm42839 antisense Interval_165484 chr9 48607547 48607777 + 0 NA Intergenic Intergenic -10287 ENSMUSG00000032271.13 ENSMUSG00000032271 ENSMUST00000128076 Nnmt protein_coding Interval_112059 chr4 33815313 33815543 + 0 NA Intergenic Intergenic -109165 ENSMUSG00000044288.6 ENSMUSG00000044288 ENSMUST00000084736 Cnr1 protein_coding Interval_63739 chr15 103170074 103171808 + 0 NA Intergenic Intergenic -7623 ENSMUSG00000036061.10 ENSMUSG00000036061 ENSMUST00000230529 Smug1 protein_coding Interval_161810 chr8 122942779 122944150 + 0 NA intron (ENSMUSG00000035569.17, intron 2 of 2) protein_coding-intron (ENSMUSG00000035569.17, intron 2 of 12) 39479 ENSMUSG00000065915.1 ENSMUSG00000065915 ENSMUST00000083981 Gm24445 snRNA Interval_100109 chr2 167120982 167122412 + 0 NA intron (ENSMUSG00000050556.9, intron 1 of 1) protein_coding-intron (ENSMUSG00000050556.9, intron 2 of 2) 28138 ENSMUSG00000083436.1 ENSMUSG00000083436 ENSMUST00000121824 Gm11471 processed_pseudogene Interval_133292 chr5 151252299 151252869 + 0 NA exon (ENSMUSG00000107387.1, exon 1 of 2) lincRNA-exon (ENSMUSG00000107387.1, exon 1 of 2) 279 ENSMUSG00000107387.1 ENSMUSG00000107387 ENSMUST00000202597 5430435K18Rik lincRNA Interval_155900 chr8 40894038 40894950 + 0 NA intron (ENSMUSG00000031596.15, intron 1 of 11) protein_coding-intron (ENSMUSG00000031596.15, intron 1 of 11) -31718 ENSMUSG00000031595.9 ENSMUSG00000031595 ENSMUST00000034004 Pdgfrl protein_coding Interval_6487 chr1 111864094 111865272 + 0 NA promoter-TSS (ENSMUSG00000038702.6) protein_coding-promoter-TSS (ENSMUSG00000038702.6) 200 ENSMUSG00000038702.6 ENSMUSG00000038702 ENSMUST00000189370 Dsel protein_coding Interval_172004 chr9 123430576 123431733 + 0 NA intron (ENSMUSG00000035202.8, intron 10 of 20) protein_coding-intron (ENSMUSG00000035202.8, intron 10 of 20) -49456 ENSMUSG00000025239.3 ENSMUSG00000025239 ENSMUST00000214309 Limd1 protein_coding Interval_77428 chr17 88629443 88630511 + 0 NA intron (ENSMUSG00000033855.15, intron 1 of 1) protein_coding-intron (ENSMUSG00000033855.15, intron 1 of 4) 3422 ENSMUSG00000033855.15 ENSMUSG00000033855 ENSMUST00000112216 Ston1 protein_coding Interval_136780 chr6 60059547 60059762 + 0 NA intron (ENSMUSG00000073045.9, intron 1 of 7) lincRNA-intron (ENSMUSG00000073045.9, intron 1 of 7) 11532 ENSMUSG00000095176.1 ENSMUSG00000095176 ENSMUST00000083820 Gm22723 snoRNA Interval_76361 chr17 79482137 79482390 + 0 NA Intergenic Intergenic 127564 ENSMUSG00000118651.1 ENSMUSG00000118651 ENSMUST00000239444 CT030740.1 antisense Interval_44265 chr13 43191849 43192321 + 0 NA Intergenic Intergenic -32533 ENSMUSG00000021368.15 ENSMUSG00000021368 ENSMUST00000221095 Tbc1d7 protein_coding Interval_155643 chr8 35505248 35505702 + 0 NA Intergenic Intergenic -24067 ENSMUSG00000031527.7 ENSMUSG00000031527 ENSMUST00000210483 Eri1 protein_coding Interval_38132 chr12 75865056 75865806 + 0 NA intron (ENSMUSG00000063450.14, intron 2 of 12) protein_coding-intron (ENSMUSG00000063450.14, intron 2 of 115) -43672 ENSMUSG00000092922.1 ENSMUSG00000092922 ENSMUST00000175181 Mir5101 miRNA Interval_118895 chr4 134327252 134328129 + 0 NA intron (ENSMUSG00000028834.13, intron 5 of 6) protein_coding-intron (ENSMUSG00000028834.13, intron 7 of 8) 7702 ENSMUSG00000028834.13 ENSMUSG00000028834 ENSMUST00000135576 Trim63 protein_coding Interval_78672 chr18 16710599 16710864 + 0 NA intron (ENSMUSG00000024304.14, intron 2 of 15) protein_coding-intron (ENSMUSG00000024304.14, intron 2 of 15) -18002 ENSMUSG00000085575.1 ENSMUSG00000085575 ENSMUST00000149095 Gm15485 antisense Interval_26462 chr11 57996827 57997341 + 0 NA Intergenic Intergenic -11980 ENSMUSG00000037331.15 ENSMUSG00000037331 ENSMUST00000140500 Larp1 protein_coding Interval_118741 chr4 133479668 133480631 + 0 NA promoter-TSS (ENSMUSG00000046694.6) protein_coding-promoter-TSS (ENSMUSG00000046694.6) 17 ENSMUSG00000046694.6 ENSMUSG00000046694 ENSMUST00000051676 Tent5b protein_coding Interval_85374 chr19 25308541 25309171 + 0 NA intron (ENSMUSG00000032702.16, intron 2 of 13) protein_coding-intron (ENSMUSG00000032702.16, intron 2 of 13) 38347 ENSMUSG00000118238.1 ENSMUSG00000118238 ENSMUST00000235913 Gm34432 processed_pseudogene Interval_75207 chr17 64669504 64670564 + 0 NA intron (ENSMUSG00000024085.13, intron 8 of 21) protein_coding-intron (ENSMUSG00000024085.13, intron 8 of 21) -43585 ENSMUSG00000024085.13 ENSMUSG00000024085 ENSMUST00000169668 Man2a1 protein_coding Interval_44715 chr13 47642514 47642984 + 0 NA Intergenic Intergenic -24801 ENSMUSG00000114509.1 ENSMUSG00000114509 ENSMUST00000223996 4930471G24Rik lincRNA Interval_120835 chr4 150917489 150918008 + 0 NA intron (ENSMUSG00000014592.21, intron 24 of 24) protein_coding-intron (ENSMUSG00000028965.13, intron 1 of 5) -7920 ENSMUSG00000028964.14 ENSMUSG00000028964 ENSMUST00000146184 Park7 protein_coding Interval_161477 chr8 120631560 120632612 + 0 NA intron (ENSMUSG00000097919.1, intron 1 of 3) protein_coding-intron (ENSMUSG00000043687.15, intron 1 of 3) -11864 ENSMUSG00000097500.1 ENSMUSG00000097500 ENSMUST00000181474 Gm26537 antisense Interval_110177 chr3 153973059 153975140 + 0 NA intron (ENSMUSG00000028360.10, intron 1 of 21) protein_coding-intron (ENSMUSG00000028360.10, intron 1 of 21) -36290 ENSMUSG00000062908.12 ENSMUSG00000062908 ENSMUST00000135724 Acadm protein_coding Interval_29303 chr11 82804907 82806601 + 0 NA exon (ENSMUSG00000020696.18, exon 6 of 6) protein_coding-exon (ENSMUSG00000020696.18, exon 6 of 6) 24561 ENSMUSG00000020697.16 ENSMUSG00000020697 ENSMUST00000172837 Lig3 protein_coding Interval_152790 chr7 137602370 137603471 + 0 NA Intergenic Intergenic -38332 ENSMUSG00000109973.1 ENSMUSG00000109973 ENSMUST00000209816 Gm45397 lincRNA Interval_174183 chrX 138446265 138446988 + 0 NA intron (ENSMUSG00000059203.10, intron 5 of 10) protein_coding-intron (ENSMUSG00000059203.10, intron 4 of 9) -23807 ENSMUSG00000087832.1 ENSMUSG00000087832 ENSMUST00000157207 Gm23958 snRNA Interval_100312 chr2 168316609 168317006 + 0 NA Intergenic Intergenic -18893 ENSMUSG00000064961.1 ENSMUSG00000064961 ENSMUST00000083027 Gm22704 snoRNA Interval_27033 chr11 62478528 62479509 + 0 NA intron (ENSMUSG00000014245.8, intron 2 of 6) protein_coding-intron (ENSMUSG00000014245.8, intron 2 of 6) -3779 ENSMUSG00000086310.1 ENSMUSG00000086310 ENSMUST00000153718 Gm12278 antisense Interval_73095 chr17 34773790 34774358 + 0 NA intron (ENSMUSG00000092200.2, intron 1 of 18) unprocessed_pseudogene-intron (ENSMUSG00000092200.2, intron 1 of 18) 2679 ENSMUSG00000092200.2 ENSMUSG00000092200 ENSMUST00000173277 Tnxa unprocessed_pseudogene Interval_86286 chr19 38395260 38397132 + 0 NA exon (ENSMUSG00000044026.3, exon 1 of 3) protein_coding-exon (ENSMUSG00000044026.3, exon 1 of 3) 155 ENSMUSG00000044026.3 ENSMUSG00000044026 ENSMUST00000236865 Slc35g1 protein_coding Interval_29005 chr11 79866397 79867426 + 0 NA intron (ENSMUSG00000086474.2, intron 2 of 4) lincRNA-intron (ENSMUSG00000086474.2, intron 2 of 4) 26804 ENSMUSG00000065283.1 ENSMUSG00000065283 ENSMUST00000083349 Gm24454 snoRNA Interval_61049 chr15 78956098 78957522 + 0 NA intron (ENSMUSG00000033088.19, intron 3 of 4) protein_coding-intron (ENSMUSG00000033088.19, intron 3 of 23) 8891 ENSMUSG00000033088.19 ENSMUSG00000033088 ENSMUST00000129922 Triobp protein_coding Interval_135540 chr6 40218446 40218688 + 0 NA intron (ENSMUSG00000057716.7, intron 3 of 3) protein_coding-intron (ENSMUSG00000057716.7, intron 2 of 2) -7652 ENSMUSG00000102287.1 ENSMUSG00000102287 ENSMUST00000194702 Gm37003 TEC Interval_84212 chr19 8798200 8798870 + 0 NA promoter-TSS (ENSMUSG00000071662.4) protein_coding-promoter-TSS (ENSMUSG00000071662.4) 0 ENSMUSG00000071662.4 ENSMUSG00000071662 ENSMUST00000236566 Polr2g protein_coding Interval_67324 chr16 46151284 46151659 + 0 NA Intergenic Intergenic 3606 ENSMUSG00000048087.6 ENSMUSG00000048087 ENSMUST00000059524 Gm4737 protein_coding Interval_93958 chr2 80125935 80127105 + 0 NA intron (ENSMUSG00000059173.19, intron 1 of 15) protein_coding-intron (ENSMUSG00000059173.19, intron 2 of 15) 2419 ENSMUSG00000059173.19 ENSMUSG00000059173 ENSMUST00000125887 Pde1a protein_coding Interval_103880 chr3 54358340 54358562 + 0 NA Intergenic Intergenic -24656 ENSMUSG00000027750.16 ENSMUSG00000027750 ENSMUST00000150868 Postn protein_coding Interval_143595 chr7 13031236 13031474 + 0 NA TTS (ENSMUSG00000005566.14) protein_coding-TTS (ENSMUSG00000005566.14) 3384 ENSMUSG00000033916.5 ENSMUSG00000033916 ENSMUST00000211369 Chmp2a protein_coding Interval_153660 chr8 4352594 4355762 + 0 NA TTS (ENSMUSG00000023235.14) protein_coding-TTS (ENSMUSG00000023235.14) 8476 ENSMUSG00000108818.1 ENSMUSG00000108818 ENSMUST00000208836 Gm44869 processed_pseudogene Interval_2135 chr1 36643783 36643995 + 0 NA intron (ENSMUSG00000046337.17, intron 4 of 14) protein_coding-intron (ENSMUSG00000046337.17, intron 4 of 9) -20076 ENSMUSG00000077939.1 ENSMUSG00000077939 ENSMUST00000104746 Gm24133 miRNA Interval_41315 chr12 112658941 112659373 + 0 NA promoter-TSS (ENSMUSG00000001729.14) protein_coding-promoter-TSS (ENSMUSG00000001729.14) 194 ENSMUSG00000098380.1 ENSMUSG00000098380 ENSMUST00000184981 Mir6939 miRNA Interval_61128 chr15 79411354 79412328 + 0 NA Intergenic Intergenic -8602 ENSMUSG00000009035.15 ENSMUSG00000009035 ENSMUST00000229049 Tmem184b protein_coding Interval_8606 chr1 143769973 143770977 + 0 NA exon (ENSMUSG00000018199.9, exon 1 of 7) protein_coding-exon (ENSMUSG00000018199.9, exon 1 of 7) 6593 ENSMUSG00000018199.9 ENSMUSG00000018199 ENSMUST00000018343 Ro60 protein_coding Interval_146598 chr7 47171581 47171886 + 0 NA Intergenic Intergenic -27411 ENSMUSG00000109200.1 ENSMUSG00000109200 ENSMUST00000207829 Gm44969 lincRNA Interval_42536 chr13 14800143 14800332 + 0 NA Intergenic Intergenic -61763 ENSMUSG00000113686.1 ENSMUSG00000113686 ENSMUST00000221689 Gm19189 processed_pseudogene Interval_82176 chr18 68336355 68338549 + 0 NA promoter-TSS (ENSMUSG00000007480.5) protein_coding-promoter-TSS (ENSMUSG00000007480.5) -151 ENSMUSG00000007480.5 ENSMUSG00000007480 ENSMUST00000239469 Mc5r protein_coding Interval_158679 chr8 85109877 85110673 + 0 NA exon (ENSMUSG00000074194.4, exon 4 of 4) protein_coding-exon (ENSMUSG00000074194.4, exon 4 of 4) 1793 ENSMUSG00000089213.1 ENSMUSG00000089213 ENSMUST00000158588 Gm23388 miRNA Interval_168878 chr9 88296426 88296821 + 0 NA Intergenic Intergenic 9899 ENSMUSG00000111795.1 ENSMUSG00000111795 ENSMUST00000215074 Gm47620 processed_pseudogene Interval_87654 chr19 54015591 54015827 + 0 NA intron (ENSMUSG00000024976.14, intron 2 of 3) protein_coding-intron (ENSMUSG00000024976.14, intron 3 of 8) -14302 ENSMUSG00000117981.1 ENSMUSG00000117981 ENSMUST00000237905 4930484I04Rik antisense Interval_141728 chr6 134064839 134065157 + 0 NA intron (ENSMUSG00000030199.16, intron 1 of 4) protein_coding-intron (ENSMUSG00000030199.16, intron 1 of 7) -8356 ENSMUSG00000108214.1 ENSMUSG00000108214 ENSMUST00000204995 Gm43982 TEC Interval_48451 chr13 99115577 99116156 + 0 NA Intergenic Intergenic 15105 ENSMUSG00000097848.2 ENSMUSG00000097848 ENSMUST00000224929 Gm807 lincRNA Interval_7104 chr1 125853041 125855228 + 0 NA intron (ENSMUSG00000026343.6, intron 1 of 1) protein_coding-intron (ENSMUSG00000026343.6, intron 1 of 1) 14131 ENSMUSG00000026343.6 ENSMUSG00000026343 ENSMUST00000159359 Gpr39 protein_coding Interval_48322 chr13 98184506 98184854 + 0 NA intron (ENSMUSG00000021662.11, intron 1 of 34) protein_coding-intron (ENSMUSG00000021662.11, intron 1 of 35) 69477 ENSMUSG00000041747.3 ENSMUSG00000041747 ENSMUST00000224842 Utp15 protein_coding Interval_78453 chr18 12931067 12931948 + 0 NA intron (ENSMUSG00000044252.18, intron 2 of 3) protein_coding-intron (ENSMUSG00000044252.18, intron 2 of 27) -24352 ENSMUSG00000024423.6 ENSMUSG00000024423 ENSMUST00000234793 Impact protein_coding Interval_13656 chr10 20528274 20529308 + 0 NA intron (ENSMUSG00000019990.15, intron 2 of 2) protein_coding-intron (ENSMUSG00000019990.15, intron 2 of 12) -9023 ENSMUSG00000092051.2 ENSMUSG00000092051 ENSMUST00000166792 Gm17229 transcribed_processed_pseudogene Interval_137068 chr6 67136665 67137119 + 0 NA intron (ENSMUSG00000097603.3, intron 4 of 5) processed_transcript-intron (ENSMUSG00000097603.3, intron 4 of 5) 21215 ENSMUSG00000097603.3 ENSMUSG00000097603 ENSMUST00000054470 A430010J10Rik processed_transcript Interval_50416 chr14 12680979 12681317 + 0 NA intron (ENSMUSG00000054423.14, intron 3 of 28) protein_coding-intron (ENSMUSG00000054423.14, intron 3 of 28) 27811 ENSMUSG00000114312.1 ENSMUSG00000114312 ENSMUST00000224775 Gm18077 processed_pseudogene Interval_124861 chr5 57462530 57462720 + 0 NA Intergenic Intergenic 2465 ENSMUSG00000104892.1 ENSMUSG00000104892 ENSMUST00000199426 Gm6615 processed_pseudogene Interval_21175 chr10 127048186 127050318 + 0 NA exon (ENSMUSG00000006724.12, exon 2 of 9) protein_coding-exon (ENSMUSG00000006724.12, exon 2 of 9) 1002 ENSMUSG00000006724.12 ENSMUSG00000006724 ENSMUST00000171868 Cyp27b1 protein_coding Interval_40541 chr12 105591936 105593972 + 0 NA exon (ENSMUSG00000021070.6, exon 3 of 3) protein_coding-exon (ENSMUSG00000021070.6, exon 3 of 3) -10165 ENSMUSG00000041347.5 ENSMUSG00000041347 ENSMUST00000041229 Bdkrb1 protein_coding Interval_167592 chr9 70852323 70854195 + 0 NA exon (ENSMUSG00000096160.2, exon 1 of 1) processed_pseudogene-exon (ENSMUSG00000096160.2, exon 1 of 1) 683 ENSMUSG00000096160.2 ENSMUSG00000096160 ENSMUST00000179930 Gm3436 processed_pseudogene Interval_148167 chr7 79594856 79595178 + 0 NA promoter-TSS (ENSMUSG00000030549.6) protein_coding-promoter-TSS (ENSMUSG00000030549.6) -88 ENSMUSG00000030549.6 ENSMUSG00000030549 ENSMUST00000161084 Rhcg protein_coding Interval_30541 chr11 95016369 95016627 + 0 NA intron (ENSMUSG00000047181.12, intron 2 of 5) protein_coding-intron (ENSMUSG00000047181.12, intron 2 of 9) 6616 ENSMUSG00000047181.12 ENSMUSG00000047181 ENSMUST00000124735 Samd14 protein_coding Interval_109061 chr3 135521738 135523423 + 0 NA promoter-TSS (ENSMUSG00000028164.15) protein_coding-promoter-TSS (ENSMUSG00000028164.15) 3952 ENSMUSG00000083610.1 ENSMUSG00000083610 ENSMUST00000121735 Oaz2-ps processed_pseudogene Interval_95229 chr2 105026728 105027519 + 0 NA Intergenic Intergenic 5164 ENSMUSG00000083487.1 ENSMUSG00000083487 ENSMUST00000119148 Gm13888 processed_pseudogene Interval_1359 chr1 20950982 20952196 + 0 NA promoter-TSS (ENSMUSG00000041809.5) protein_coding-promoter-TSS (ENSMUSG00000041809.5) -37 ENSMUSG00000041809.5 ENSMUSG00000041809 ENSMUST00000038447 Efhc1 protein_coding Interval_99571 chr2 163285663 163286259 + 0 NA intron (ENSMUSG00000074607.11, intron 3 of 8) protein_coding-intron (ENSMUSG00000074607.11, intron 3 of 8) 60507 ENSMUSG00000074607.11 ENSMUSG00000074607 ENSMUST00000148599 Tox2 protein_coding Interval_87681 chr19 54397256 54397445 + 0 NA Intergenic Intergenic -47630 ENSMUSG00000117755.1 ENSMUSG00000117755 ENSMUST00000236789 Gm50188 processed_pseudogene Interval_167636 chr9 71461060 71461312 + 0 NA Intergenic Intergenic 24719 ENSMUSG00000032199.13 ENSMUSG00000032199 ENSMUST00000233263 Polr2m protein_coding Interval_79088 chr18 24449159 24449577 + 0 NA Intergenic Intergenic -20198 ENSMUSG00000065532.1 ENSMUSG00000065532 ENSMUST00000083598 Mir187 miRNA Interval_134294 chr6 24627609 24628231 + 0 NA exon (ENSMUSG00000029684.14, exon 1 of 1) protein_coding-exon (ENSMUSG00000029684.14, exon 1 of 1) 153 ENSMUSG00000029684.14 ENSMUSG00000029684 ENSMUST00000173399 Wasl protein_coding Interval_33536 chr11 117088361 117089166 + 0 NA Intergenic Intergenic 2927 ENSMUSG00000093083.1 ENSMUSG00000093083 ENSMUST00000175342 Gm24323 miRNA Interval_114095 chr4 63409951 63411076 + 0 NA Intergenic Intergenic 22809 ENSMUSG00000039137.18 ENSMUSG00000039137 ENSMUST00000140720 Whrn protein_coding Interval_114423 chr4 75985299 75985951 + 0 NA intron (ENSMUSG00000028399.18, intron 22 of 30) protein_coding-intron (ENSMUSG00000028399.18, intron 21 of 29) -82470 ENSMUSG00000081844.1 ENSMUSG00000081844 ENSMUST00000117371 Gm11241 processed_pseudogene Interval_101281 chr2 180158700 180159180 + 0 NA intron (ENSMUSG00000039050.8, intron 12 of 12) protein_coding-intron (ENSMUSG00000039050.8, intron 12 of 13) -12655 ENSMUSG00000039041.15 ENSMUSG00000039041 ENSMUST00000152850 Adrm1 protein_coding Interval_52608 chr14 47855539 47858159 + 0 NA Intergenic Intergenic -42002 ENSMUSG00000115609.1 ENSMUSG00000115609 ENSMUST00000226469 4930447J18Rik lincRNA Interval_45424 chr13 55093867 55094199 + 0 NA promoter-TSS (ENSMUSG00000025878.16) protein_coding-promoter-TSS (ENSMUSG00000025878.16) 6221 ENSMUSG00000025878.16 ENSMUSG00000025878 ENSMUST00000124561 Uimc1 protein_coding Interval_35111 chr12 17371634 17371904 + 0 NA intron (ENSMUSG00000061458.9, intron 11 of 20) protein_coding-intron (ENSMUSG00000061458.9, intron 11 of 20) 16377 ENSMUSG00000093037.1 ENSMUSG00000093037 ENSMUST00000175296 Mir3066 miRNA Interval_159072 chr8 89482415 89482925 + 0 NA Intergenic Intergenic 106871 ENSMUSG00000064758.1 ENSMUSG00000064758 ENSMUST00000082824 Gm26331 snRNA Interval_28030 chr11 72356643 72356899 + 0 NA intron (ENSMUSG00000020799.16, intron 3 of 7) protein_coding-intron (ENSMUSG00000020799.16, intron 3 of 7) 5102 ENSMUSG00000020799.16 ENSMUSG00000020799 ENSMUST00000021155 Tekt1 protein_coding Interval_66125 chr16 31783097 31783397 + 0 NA intron (ENSMUSG00000022770.17, intron 6 of 24) protein_coding-intron (ENSMUSG00000022770.17, intron 6 of 24) 22281 ENSMUSG00000116626.1 ENSMUSG00000116626 ENSMUST00000232512 Gm49705 TEC Interval_46523 chr13 66817216 66817432 + 0 NA Intergenic Intergenic -2105 ENSMUSG00000117784.1 ENSMUSG00000117784 ENSMUST00000222552 Vmn2r-ps108 unprocessed_pseudogene Interval_69201 chr16 91303740 91304702 + 0 NA intron (ENSMUSG00000085865.2, intron 1 of 3) lincRNA-intron (ENSMUSG00000085865.2, intron 1 of 3) 24776 ENSMUSG00000085865.2 ENSMUSG00000085865 ENSMUST00000146994 Gm15966 lincRNA Interval_100325 chr2 168412701 168413045 + 0 NA Intergenic Intergenic 5701 ENSMUSG00000082239.1 ENSMUSG00000082239 ENSMUST00000119539 Gm14234 processed_pseudogene Interval_58335 chr15 32575607 32576507 + 0 NA intron (ENSMUSG00000022231.10, intron 11 of 12) protein_coding-intron (ENSMUSG00000022231.10, intron 11 of 22) 47448 ENSMUSG00000115063.1 ENSMUSG00000115063 ENSMUST00000227807 4930465K09Rik antisense Interval_100646 chr2 170707796 170710078 + 0 NA Intergenic Intergenic -22870 ENSMUSG00000027560.4 ENSMUSG00000027560 ENSMUST00000029075 Dok5 protein_coding Interval_125539 chr5 69520302 69521325 + 0 NA intron (ENSMUSG00000029158.9, intron 3 of 3) protein_coding-intron (ENSMUSG00000029158.9, intron 4 of 5) -15853 ENSMUSG00000106986.1 ENSMUSG00000106986 ENSMUST00000202469 Gm42887 TEC Interval_56698 chr14 121446828 121447574 + 0 NA Intergenic Intergenic 8561 ENSMUSG00000115123.1 ENSMUSG00000115123 ENSMUST00000227451 Gm33299 lincRNA Interval_96198 chr2 120494623 120496139 + 0 NA intron (ENSMUSG00000079110.12, intron 12 of 22) protein_coding-intron (ENSMUSG00000079110.12, intron 11 of 20) 31728 ENSMUSG00000079110.12 ENSMUSG00000079110 ENSMUST00000151342 Capn3 protein_coding Interval_69844 chr16 97466729 97468195 + 0 NA promoter-TSS (ENSMUSG00000116929.1) TEC-promoter-TSS (ENSMUSG00000116929.1) -514 ENSMUSG00000116929.1 ENSMUSG00000116929 ENSMUST00000231393 2210009P08Rik TEC Interval_97531 chr2 139272195 139272399 + 0 NA intron (ENSMUSG00000085071.1, intron 4 of 5) processed_transcript-intron (ENSMUSG00000085071.1, intron 4 of 5) -96172 ENSMUSG00000082285.1 ENSMUSG00000082285 ENSMUST00000120815 Gm14069 unprocessed_pseudogene Interval_98478 chr2 152695919 152697199 + 0 NA TTS (ENSMUSG00000019188.16) protein_coding-TTS (ENSMUSG00000019188.16) 9524 ENSMUSG00000042814.8 ENSMUSG00000042814 ENSMUST00000062148 Mcts2 protein_coding Interval_145587 chr7 35740971 35741607 + 0 NA intron (ENSMUSG00000043671.14, intron 3 of 18) protein_coding-intron (ENSMUSG00000043671.14, intron 3 of 18) -32724 ENSMUSG00000043671.14 ENSMUSG00000043671 ENSMUST00000124116 Dpy19l3 protein_coding Interval_166068 chr9 56213493 56214580 + 0 NA intron (ENSMUSG00000074305.9, intron 3 of 3) protein_coding-intron (ENSMUSG00000074305.9, intron 6 of 6) 9735 ENSMUSG00000076281.1 ENSMUSG00000076281 ENSMUST00000102326 Gm24270 miRNA Interval_141402 chr6 128034348 128036279 + 0 NA promoter-TSS (ENSMUSG00000030352.15) protein_coding-promoter-TSS (ENSMUSG00000030352.15) -308 ENSMUSG00000030352.15 ENSMUSG00000030352 ENSMUST00000127075 Tspan9 protein_coding Interval_55843 chr14 101415093 101415385 + 0 NA Intergenic Intergenic 71695 ENSMUSG00000115538.1 ENSMUSG00000115538 ENSMUST00000227762 Hspd1-ps5 processed_pseudogene Interval_64425 chr16 11282611 11283080 + 0 NA Intergenic Intergenic -28400 ENSMUSG00000088544.1 ENSMUSG00000088544 ENSMUST00000157919 Mir1945 miRNA Interval_61951 chr15 85445014 85445750 + 0 NA intron (ENSMUSG00000016541.10, intron 10 of 11) protein_coding-intron (ENSMUSG00000016541.10, intron 10 of 11) 57845 ENSMUSG00000096607.1 ENSMUSG00000096607 ENSMUST00000178942 7530416G11Rik protein_coding Interval_1909 chr1 34472151 34473479 + 0 NA promoter-TSS (ENSMUSG00000026126.15) protein_coding-promoter-TSS (ENSMUSG00000026126.15) -2381 ENSMUSG00000100280.2 ENSMUSG00000100280 ENSMUST00000185881 Gm28417 processed_transcript Interval_111970 chr4 32894337 32894638 + 0 NA intron (ENSMUSG00000040183.13, intron 1 of 16) protein_coding-intron (ENSMUSG00000040183.13, intron 1 of 16) 1801 ENSMUSG00000083565.1 ENSMUSG00000083565 ENSMUST00000119904 Gm11941 processed_pseudogene Interval_174189 chrX 139209405 139210362 + 0 NA promoter-TSS (ENSMUSG00000042515.13) protein_coding-promoter-TSS (ENSMUSG00000042515.13) -7283 ENSMUSG00000042515.13 ENSMUSG00000042515 ENSMUST00000113042 Pwwp3b protein_coding Interval_148064 chr7 78953579 78954550 + 0 NA Intergenic Intergenic -30178 ENSMUSG00000108670.1 ENSMUSG00000108670 ENSMUST00000206812 Gm44815 TEC Interval_21719 chr11 3921203 3921974 + 0 NA intron (ENSMUSG00000020432.12, intron 8 of 9) protein_coding-intron (ENSMUSG00000020432.12, intron 8 of 9) -6924 ENSMUSG00000048807.2 ENSMUSG00000048807 ENSMUST00000051207 Slc35e4 protein_coding Interval_109539 chr3 144218774 144219210 + 0 NA Intergenic Intergenic -16029 ENSMUSG00000028266.17 ENSMUSG00000028266 ENSMUST00000124891 Lmo4 protein_coding Interval_71968 chr17 27301234 27301661 + 0 NA Intergenic Intergenic 15648 ENSMUSG00000105142.1 ENSMUSG00000105142 ENSMUST00000198396 Mir7214 miRNA Interval_107795 chr3 115177495 115178257 + 0 NA Intergenic Intergenic -5827 ENSMUSG00000106510.1 ENSMUSG00000106510 ENSMUST00000198707 Gm18429 processed_pseudogene Interval_64288 chr16 10253412 10254757 + 0 NA Intergenic Intergenic 15918 ENSMUSG00000116187.1 ENSMUSG00000116187 ENSMUST00000229819 Gm49456 processed_pseudogene Interval_146560 chr7 46829601 46830168 + 0 NA Intergenic Intergenic -2580 ENSMUSG00000109663.1 ENSMUSG00000109663 ENSMUST00000210610 Gm45308 processed_pseudogene Interval_80623 chr18 44724286 44725581 + 0 NA promoter-TSS (ENSMUSG00000071856.10) protein_coding-promoter-TSS (ENSMUSG00000071856.10) -62649 ENSMUSG00000071856.10 ENSMUSG00000071856 ENSMUST00000201270 Mcc protein_coding Interval_117897 chr4 126942426 126943666 + 0 NA intron (ENSMUSG00000042446.16, intron 2 of 3) protein_coding-intron (ENSMUSG00000042446.16, intron 2 of 29) 24853 ENSMUSG00000042446.16 ENSMUSG00000042446 ENSMUST00000123597 Zmym4 protein_coding Interval_51187 chr14 24551005 24551458 + 0 NA Intergenic Intergenic 60513 ENSMUSG00000025290.17 ENSMUSG00000025290 ENSMUST00000224699 Rps24 protein_coding Interval_47338 chr13 81666804 81667025 + 0 NA intron (ENSMUSG00000035840.7, intron 1 of 1) protein_coding-intron (ENSMUSG00000035840.7, intron 2 of 2) 9122 ENSMUSG00000035840.7 ENSMUSG00000035840 ENSMUST00000224420 Lysmd3 protein_coding Interval_132098 chr5 142751907 142753661 + 0 NA intron (ENSMUSG00000039477.16, intron 12 of 24) protein_coding-intron (ENSMUSG00000039477.16, intron 12 of 24) 13238 ENSMUSG00000039477.16 ENSMUSG00000039477 ENSMUST00000198181 Tnrc18 protein_coding Interval_167974 chr9 75104560 75104782 + 0 NA intron (ENSMUSG00000034593.16, intron 1 of 40) protein_coding-intron (ENSMUSG00000034593.16, intron 1 of 40) -5531 ENSMUSG00000090001.1 ENSMUSG00000090001 ENSMUST00000162765 Gm9719 processed_pseudogene Interval_23750 chr11 25849787 25850024 + 0 NA intron (ENSMUSG00000032985.15, intron 2 of 2) protein_coding-intron (ENSMUSG00000032985.15, intron 2 of 6) -80764 ENSMUSG00000032985.15 ENSMUSG00000032985 ENSMUST00000125987 5730522E02Rik protein_coding Interval_58053 chr15 27476054 27477941 + 0 NA intron (ENSMUSG00000022265.7, intron 1 of 11) protein_coding-intron (ENSMUSG00000022265.7, intron 1 of 11) -2009 ENSMUSG00000115568.1 ENSMUSG00000115568 ENSMUST00000227393 Tiaf2 TEC Interval_61357 chr15 81035310 81035597 + 0 NA intron (ENSMUSG00000042292.18, intron 2 of 2) protein_coding-intron (ENSMUSG00000042292.18, intron 2 of 12) -4190 ENSMUSG00000064587.1 ENSMUSG00000064587 ENSMUST00000082653 Gm25131 snRNA Interval_149810 chr7 101729442 101729693 + 0 NA intron (ENSMUSG00000001829.17, intron 5 of 16) protein_coding-intron (ENSMUSG00000001829.17, intron 5 of 15) -60969 ENSMUSG00000110360.1 ENSMUSG00000110360 ENSMUST00000210465 Gm45380 processed_pseudogene Interval_42300 chr13 11911079 11912527 + 0 NA intron (ENSMUSG00000021313.16, intron 3 of 104) protein_coding-intron (ENSMUSG00000021313.16, intron 3 of 104) -27755 ENSMUSG00000098110.1 ENSMUSG00000098110 ENSMUST00000182176 Gm26956 processed_pseudogene Interval_5504 chr1 89364891 89365092 + 0 NA intron (ENSMUSG00000099938.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000099938.1, intron 1 of 2) -6847 ENSMUSG00000101288.1 ENSMUSG00000101288 ENSMUST00000190308 Gm28342 lincRNA Interval_162352 chr8 127335889 127336287 + 0 NA intron (ENSMUSG00000025812.18, intron 5 of 15) protein_coding-intron (ENSMUSG00000025812.18, intron 5 of 23) 164684 ENSMUSG00000025812.18 ENSMUSG00000025812 ENSMUST00000159940 Pard3 protein_coding Interval_150524 chr7 111879473 111879969 + 0 NA Intergenic Intergenic -21166 ENSMUSG00000110065.1 ENSMUSG00000110065 ENSMUST00000211213 Gm45588 processed_pseudogene Interval_117288 chr4 122679258 122679500 + 0 NA Intergenic Intergenic -2101 ENSMUSG00000083109.3 ENSMUSG00000083109 ENSMUST00000120975 Gm12876 unprocessed_pseudogene Interval_98488 chr2 152741717 152742789 + 0 NA Intergenic Intergenic -3454 ENSMUSG00000082318.3 ENSMUSG00000082318 ENSMUST00000121985 Gm14162 processed_pseudogene Interval_53134 chr14 54640837 54642004 + 0 NA promoter-TSS (ENSMUSG00000059674.7) protein_coding-promoter-TSS (ENSMUSG00000059674.7) 468 ENSMUSG00000091306.2 ENSMUSG00000091306 ENSMUST00000169818 Gm17606 protein_coding Interval_107743 chr3 112512217 112513374 + 0 NA Intergenic Intergenic -78768 ENSMUSG00000105785.1 ENSMUSG00000105785 ENSMUST00000198956 Gm42526 processed_pseudogene Interval_6611 chr1 118292740 118293016 + 0 NA Intergenic Intergenic 18584 ENSMUSG00000026374.14 ENSMUSG00000026374 ENSMUST00000186163 Tsn protein_coding Interval_46338 chr13 64051019 64051422 + 0 NA Intergenic Intergenic 37981 ENSMUSG00000033122.14 ENSMUSG00000033122 ENSMUST00000222810 Hsd17b3 protein_coding Interval_12262 chr1 191216057 191217143 + 0 NA intron (ENSMUSG00000026628.13, intron 1 of 3) protein_coding-intron (ENSMUSG00000026628.13, intron 1 of 3) 1439 ENSMUSG00000026628.13 ENSMUSG00000026628 ENSMUST00000131854 Atf3 protein_coding Interval_99887 chr2 165613753 165614131 + 0 NA intron (ENSMUSG00000017897.18, intron 1 of 15) protein_coding-intron (ENSMUSG00000017897.18, intron 1 of 15) -12155 ENSMUSG00000100796.1 ENSMUSG00000100796 ENSMUST00000187099 Gm28163 lincRNA Interval_64757 chr16 15314439 15315822 + 0 NA Intergenic Intergenic -2328 ENSMUSG00000094472.1 ENSMUSG00000094472 ENSMUST00000178312 Gm21897 protein_coding Interval_91842 chr2 50175594 50176328 + 0 NA intron (ENSMUSG00000050447.15, intron 3 of 4) protein_coding-intron (ENSMUSG00000050447.15, intron 4 of 5) 47592 ENSMUSG00000050447.15 ENSMUSG00000050447 ENSMUST00000126337 Lypd6 protein_coding Interval_94819 chr2 94764196 94765129 + 0 NA Intergenic Intergenic 27674 ENSMUSG00000077281.1 ENSMUSG00000077281 ENSMUST00000104093 Gm26396 snoRNA Interval_59845 chr15 59719596 59720340 + 0 NA Intergenic Intergenic -47855 ENSMUSG00000115010.1 ENSMUSG00000115010 ENSMUST00000227801 Gm20150 processed_pseudogene Interval_102280 chr3 20392699 20392913 + 0 NA promoter-TSS (ENSMUSG00000103573.1) processed_pseudogene-promoter-TSS (ENSMUSG00000103573.1) -821 ENSMUSG00000103573.1 ENSMUSG00000103573 ENSMUST00000191874 Gm18426 processed_pseudogene Interval_160168 chr8 106899626 106900422 + 0 NA intron (ENSMUSG00000041438.8, intron 3 of 14) protein_coding-intron (ENSMUSG00000041438.8, intron 4 of 16) 5435 ENSMUSG00000041438.8 ENSMUSG00000041438 ENSMUST00000212718 Utp4 protein_coding Interval_13500 chr10 18769897 18770346 + 0 NA intron (ENSMUSG00000111474.1, intron 2 of 4) antisense-intron (ENSMUSG00000111474.1, intron 2 of 4) 16672 ENSMUSG00000044624.7 ENSMUSG00000044624 ENSMUST00000055107 Gm4922 protein_coding Interval_122049 chr5 14605535 14605940 + 0 NA exon (ENSMUSG00000106048.1, exon 1 of 1) TEC-exon (ENSMUSG00000106048.1, exon 1 of 1) 1688 ENSMUSG00000106048.1 ENSMUSG00000106048 ENSMUST00000199366 Gm42444 TEC Interval_62442 chr15 92970216 92970527 + 0 NA TTS (ENSMUSG00000116242.1) processed_pseudogene-TTS (ENSMUSG00000116242.1) 1556 ENSMUSG00000116242.1 ENSMUSG00000116242 ENSMUST00000230575 Gm18815 processed_pseudogene Interval_163940 chr9 29411279 29412918 + 0 NA promoter-TSS (ENSMUSG00000059974.10) protein_coding-promoter-TSS (ENSMUSG00000059974.10) 180412 ENSMUSG00000085638.1 ENSMUSG00000085638 ENSMUST00000141752 Gm15521 sense_intronic Interval_13029 chr10 9676918 9677272 + 0 NA Intergenic Intergenic -7627 ENSMUSG00000111901.1 ENSMUSG00000111901 ENSMUST00000219888 Gm6150 transcribed_processed_pseudogene Interval_116958 chr4 118444431 118446744 + 0 NA intron (ENSMUSG00000006389.13, intron 8 of 9) protein_coding-intron (ENSMUSG00000006389.13, intron 10 of 11) -4367 ENSMUSG00000081921.1 ENSMUSG00000081921 ENSMUST00000121913 Gm12858 processed_pseudogene Interval_49929 chr13 118414088 118415144 + 0 NA Intergenic Intergenic -27935 ENSMUSG00000021731.10 ENSMUSG00000021731 ENSMUST00000225170 Mrps30 protein_coding Interval_103557 chr3 49307397 49307586 + 0 NA Intergenic Intergenic -18189 ENSMUSG00000102679.1 ENSMUSG00000102679 ENSMUST00000192871 Gm20557 lincRNA Interval_145656 chr7 36867850 36868143 + 0 NA Intergenic Intergenic -116523 ENSMUSG00000089273.1 ENSMUSG00000089273 ENSMUST00000158648 Gm24550 misc_RNA Interval_133683 chr6 8644858 8645038 + 0 NA intron (ENSMUSG00000062995.12, intron 11 of 12) protein_coding-intron (ENSMUSG00000062995.12, intron 12 of 13) -47959 ENSMUSG00000107724.1 ENSMUSG00000107724 ENSMUST00000204813 Gm16042 processed_pseudogene Interval_131993 chr5 141987135 141987880 + 0 NA intron (ENSMUSG00000039683.16, intron 14 of 44) protein_coding-intron (ENSMUSG00000039683.16, intron 10 of 40) -295599 ENSMUSG00000097947.1 ENSMUSG00000097947 ENSMUST00000182990 Gm26970 processed_pseudogene Interval_97564 chr2 139908435 139908673 + 0 NA intron (ENSMUSG00000039033.11, intron 10 of 12) protein_coding-intron (ENSMUSG00000039033.11, intron 11 of 13) 45257 ENSMUSG00000084207.1 ENSMUSG00000084207 ENSMUST00000120773 Gm14070 processed_pseudogene Interval_30550 chr11 95070300 95070941 + 0 NA intron (ENSMUSG00000001507.16, intron 1 of 4) protein_coding-intron (ENSMUSG00000001507.16, intron 1 of 25) 6177 ENSMUSG00000001507.16 ENSMUSG00000001507 ENSMUST00000145671 Itga3 protein_coding Interval_52030 chr14 34711744 34713611 + 0 NA intron (ENSMUSG00000041408.18, intron 1 of 2) protein_coding-intron (ENSMUSG00000041408.18, intron 4 of 18) -24594 ENSMUSG00000041408.18 ENSMUSG00000041408 ENSMUST00000174559 Wapl protein_coding Interval_31746 chr11 102586650 102586973 + 0 NA Intergenic Intergenic -7536 ENSMUSG00000078640.9 ENSMUSG00000078640 ENSMUST00000107080 Gm11627 protein_coding Interval_89811 chr2 25598556 25599343 + 0 NA intron (ENSMUSG00000015087.14, intron 3 of 4) protein_coding-intron (ENSMUSG00000015087.14, intron 3 of 14) -8577 ENSMUSG00000015087.14 ENSMUSG00000015087 ENSMUST00000140785 Rabl6 protein_coding Interval_147046 chr7 59393938 59394284 + 0 NA promoter-TSS (ENSMUSG00000096913.1) snoRNA-promoter-TSS (ENSMUSG00000096913.1) -472 ENSMUSG00000096913.1 ENSMUSG00000096913 ENSMUST00000178338 Gm24866 snoRNA Interval_9856 chr1 163195576 163196030 + 0 NA Intergenic Intergenic 77576 ENSMUSG00000089174.1 ENSMUSG00000089174 ENSMUST00000158549 Gm22434 snoRNA Interval_172812 chrX 50569290 50570211 + 0 NA exon (ENSMUSG00000085396.7, exon 18 of 20) processed_transcript-exon (ENSMUSG00000085396.7, exon 18 of 20) -4867 ENSMUSG00000085396.7 ENSMUSG00000085396 ENSMUST00000148530 Firre processed_transcript Interval_117778 chr4 126180182 126182238 + 0 NA intron (ENSMUSG00000043962.16, intron 4 of 4) protein_coding-intron (ENSMUSG00000043962.16, intron 2 of 10) -1063 ENSMUSG00000043962.16 ENSMUSG00000043962 ENSMUST00000124327 Thrap3 protein_coding Interval_113538 chr4 55944430 55944718 + 0 NA Intergenic Intergenic 49165 ENSMUSG00000085643.1 ENSMUSG00000085643 ENSMUST00000134099 Gm12519 lincRNA Interval_76474 chr17 80449987 80451375 + 0 NA intron (ENSMUSG00000024241.7, intron 5 of 19) protein_coding-intron (ENSMUSG00000024241.7, intron 5 of 21) 29772 ENSMUSG00000024241.7 ENSMUSG00000024241 ENSMUST00000234841 Sos1 protein_coding Interval_99034 chr2 156774614 156775907 + 0 NA promoter-TSS (ENSMUSG00000067818.6) protein_coding-promoter-TSS (ENSMUSG00000067818.6) -194 ENSMUSG00000067818.6 ENSMUSG00000067818 ENSMUST00000131622 Myl9 protein_coding Interval_33588 chr11 117384377 117385198 + 0 NA Intergenic Intergenic -29602 ENSMUSG00000086588.1 ENSMUSG00000086588 ENSMUST00000124901 Gm11729 lincRNA Interval_107523 chr3 108295849 108297158 + 0 NA intron (ENSMUSG00000068747.14, intron 1 of 20) protein_coding-intron (ENSMUSG00000068747.14, intron 1 of 19) 8622 ENSMUSG00000105358.1 ENSMUSG00000105358 ENSMUST00000198943 Gm43099 TEC Interval_74828 chr17 56763271 56765754 + 0 NA promoter-TSS (ENSMUSG00000007603.9) protein_coding-promoter-TSS (ENSMUSG00000007603.9) -272 ENSMUSG00000007603.9 ENSMUSG00000007603 ENSMUST00000232684 Dus3l protein_coding Interval_147547 chr7 68225998 68226331 + 0 NA TTS (ENSMUSG00000005533.10) protein_coding-TTS (ENSMUSG00000005533.10) 14326 ENSMUSG00000005533.10 ENSMUSG00000005533 ENSMUST00000208871 Igf1r protein_coding Interval_9244 chr1 155438170 155439135 + 0 NA Intergenic Intergenic 88491 ENSMUSG00000073535.5 ENSMUSG00000073535 ENSMUST00000194133 Gm5532 lincRNA Interval_134541 chr6 29432918 29436825 + 0 NA intron (ENSMUSG00000068699.12, intron 1 of 1) protein_coding-intron (ENSMUSG00000068699.12, intron 1 of 47) 1615 ENSMUSG00000068699.12 ENSMUSG00000068699 ENSMUST00000065090 Flnc protein_coding Interval_80001 chr18 36568000 36568338 + 0 NA intron (ENSMUSG00000024483.19, intron 1 of 33) protein_coding-intron (ENSMUSG00000024483.19, intron 1 of 33) 40018 ENSMUSG00000024485.16 ENSMUSG00000024485 ENSMUST00000235382 Slc4a9 protein_coding Interval_44977 chr13 51113985 51115091 + 0 NA intron (ENSMUSG00000021395.11, intron 1 of 5) protein_coding-intron (ENSMUSG00000021395.11, intron 1 of 5) -19781 ENSMUSG00000021395.11 ENSMUSG00000021395 ENSMUST00000223152 Spin1 protein_coding Interval_106603 chr3 97680656 97682438 + 0 NA Intergenic Intergenic -6853 ENSMUSG00000090441.2 ENSMUSG00000090441 ENSMUST00000166227 Gm17651 protein_coding Interval_130135 chr5 124468843 124469193 + 0 NA intron (ENSMUSG00000029401.8, intron 2 of 3) protein_coding-intron (ENSMUSG00000029401.8, intron 2 of 3) -3409 ENSMUSG00000082402.1 ENSMUSG00000082402 ENSMUST00000119162 Gm15621 processed_pseudogene Interval_173083 chrX 71131583 71131983 + 0 NA TTS (ENSMUSG00000077309.1) rRNA-TTS (ENSMUSG00000077309.1) 546 ENSMUSG00000077309.1 ENSMUSG00000077309 ENSMUST00000104121 n-R5s8 rRNA Interval_163143 chr9 15684962 15685495 + 0 NA Intergenic Intergenic 2326 ENSMUSG00000110786.1 ENSMUSG00000110786 ENSMUST00000215858 Gm5119 processed_pseudogene Interval_167777 chr9 72672113 72672923 + 0 NA TTS (ENSMUSG00000032216.15) protein_coding-TTS (ENSMUSG00000032216.15) 10172 ENSMUSG00000032216.15 ENSMUSG00000032216 ENSMUST00000184287 Nedd4 protein_coding Interval_5223 chr1 86539176 86540182 + 0 NA Intergenic Intergenic 12942 ENSMUSG00000026238.14 ENSMUSG00000026238 ENSMUST00000188533 Ptma protein_coding Interval_140680 chr6 120510637 120512028 + 0 NA intron (ENSMUSG00000058979.7, intron 6 of 7) protein_coding-intron (ENSMUSG00000058979.7, intron 6 of 7) -1117 ENSMUSG00000093739.1 ENSMUSG00000093739 ENSMUST00000177251 Gm20692 antisense Interval_43028 chr13 23323898 23326622 + 0 NA intron (ENSMUSG00000087097.1, intron 2 of 3) antisense-intron (ENSMUSG00000087097.1, intron 2 of 3) 11735 ENSMUSG00000087097.1 ENSMUSG00000087097 ENSMUST00000122940 4930586N03Rik antisense Interval_8400 chr1 138847987 138849294 + 0 NA promoter-TSS (ENSMUSG00000019230.14) protein_coding-promoter-TSS (ENSMUSG00000019230.14) 5710 ENSMUSG00000079283.2 ENSMUSG00000079283 ENSMUST00000193374 2310009B15Rik protein_coding Interval_143754 chr7 16087914 16088844 + 0 NA intron (ENSMUSG00000078796.4, intron 6 of 13) protein_coding-intron (ENSMUSG00000078796.4, intron 8 of 15) 16458 ENSMUSG00000078796.4 ENSMUSG00000078796 ENSMUST00000108509 Zfp541 protein_coding Interval_12892 chr10 7792125 7793436 + 0 NA promoter-TSS (ENSMUSG00000015757.10) protein_coding-promoter-TSS (ENSMUSG00000015757.10) 44 ENSMUSG00000040006.13 ENSMUSG00000040006 ENSMUST00000065124 Ginm1 protein_coding Interval_42042 chr13 6757372 6757578 + 0 NA Intergenic Intergenic 84336 ENSMUSG00000113545.1 ENSMUSG00000113545 ENSMUST00000223351 Gm48238 processed_pseudogene Interval_172456 chrX 20687377 20689033 + 0 NA promoter-TSS (ENSMUSG00000031065.14) protein_coding-promoter-TSS (ENSMUSG00000031065.14) -8200 ENSMUSG00000031065.14 ENSMUSG00000031065 ENSMUST00000129914 Cdk16 protein_coding Interval_29173 chr11 81039742 81040059 + 0 NA intron (ENSMUSG00000020704.13, intron 1 of 9) protein_coding-intron (ENSMUSG00000020704.13, intron 1 of 9) -6894 ENSMUSG00000082027.1 ENSMUSG00000082027 ENSMUST00000119111 Gm11416 processed_pseudogene Interval_169372 chr9 96759027 96759699 + 0 NA Intergenic Intergenic -6222 ENSMUSG00000101581.6 ENSMUSG00000101581 ENSMUST00000190054 C430002N11Rik processed_transcript Interval_153223 chr7 142571562 142571752 + 0 NA Intergenic Intergenic -5196 ENSMUSG00000099143.1 ENSMUSG00000099143 ENSMUST00000184983 Gm27483 misc_RNA Interval_20680 chr10 120201093 120202784 + 0 NA promoter-TSS (ENSMUSG00000020227.10) protein_coding-promoter-TSS (ENSMUSG00000020227.10) 192 ENSMUSG00000020227.10 ENSMUSG00000020227 ENSMUST00000143100 Irak3 protein_coding Interval_145763 chr7 38131019 38131799 + 0 NA Intergenic Intergenic -32040 ENSMUSG00000002068.16 ENSMUSG00000002068 ENSMUST00000124979 Ccne1 protein_coding Interval_147404 chr7 66497607 66498556 + 0 NA Intergenic Intergenic 56195 ENSMUSG00000109114.1 ENSMUSG00000109114 ENSMUST00000208297 Gm44753 lincRNA Interval_12829 chr10 5929157 5929876 + 0 NA Intergenic Intergenic -7130 ENSMUSG00000019775.17 ENSMUSG00000019775 ENSMUST00000019909 Rgs17 protein_coding Interval_98582 chr2 153386516 153386759 + 0 NA intron (ENSMUSG00000042548.14, intron 3 of 11) protein_coding-intron (ENSMUSG00000042548.14, intron 4 of 12) -27212 ENSMUSG00000082283.1 ENSMUSG00000082283 ENSMUST00000119815 Gm14472 processed_pseudogene Interval_77854 chr18 4657133 4657667 + 0 NA intron (ENSMUSG00000033960.6, intron 1 of 2) protein_coding-intron (ENSMUSG00000033960.6, intron 2 of 3) 22522 ENSMUSG00000033960.6 ENSMUSG00000033960 ENSMUST00000234153 Jcad protein_coding Interval_39062 chr12 84759155 84759403 + 0 NA intron (ENSMUSG00000021242.9, intron 1 of 1) protein_coding-intron (ENSMUSG00000021242.9, intron 3 of 3) 3261 ENSMUSG00000021242.9 ENSMUSG00000021242 ENSMUST00000221056 Npc2 protein_coding Interval_37909 chr12 72992373 72992765 + 0 NA Intergenic Intergenic 41674 ENSMUSG00000102197.1 ENSMUSG00000102197 ENSMUST00000195404 Gm38170 TEC Interval_103094 chr3 35221253 35221449 + 0 NA Intergenic Intergenic 54780 ENSMUSG00000105651.1 ENSMUSG00000105651 ENSMUST00000198307 1700017M07Rik lincRNA Interval_148786 chr7 87415105 87415867 + 0 NA Intergenic Intergenic 77906 ENSMUSG00000004651.6 ENSMUSG00000004651 ENSMUST00000207834 Tyr protein_coding Interval_127337 chr5 103170888 103171275 + 0 NA intron (ENSMUSG00000046709.18, intron 2 of 2) protein_coding-intron (ENSMUSG00000046709.18, intron 2 of 13) 40253 ENSMUSG00000046709.18 ENSMUSG00000046709 ENSMUST00000136595 Mapk10 protein_coding Interval_41002 chr12 110539053 110539961 + 0 NA intron (ENSMUSG00000017843.14, intron 4 of 12) protein_coding-intron (ENSMUSG00000017843.14, intron 2 of 13) -51005 ENSMUSG00000113361.1 ENSMUSG00000113361 ENSMUST00000221143 B930059L03Rik lincRNA Interval_149702 chr7 100779409 100780099 + 0 NA intron (ENSMUSG00000029461.17, intron 2 of 8) protein_coding-intron (ENSMUSG00000029461.17, intron 2 of 8) -6621 ENSMUSG00000029461.17 ENSMUSG00000029461 ENSMUST00000216021 Fam168a protein_coding Interval_165802 chr9 53265188 53266119 + 0 NA intron (ENSMUSG00000032048.3, intron 1 of 1) lincRNA-intron (ENSMUSG00000032048.3, intron 1 of 1) 1038 ENSMUSG00000032048.3 ENSMUSG00000032048 ENSMUST00000034550 4930510E17Rik lincRNA Interval_72327 chr17 29227471 29227745 + 0 NA intron (ENSMUSG00000024008.16, intron 1 of 13) protein_coding-intron (ENSMUSG00000024008.16, intron 1 of 20) 4312 ENSMUSG00000117610.1 ENSMUSG00000117610 ENSMUST00000235091 Gm50054 TEC Interval_127210 chr5 101344935 101345734 + 0 NA Intergenic Intergenic 39756 ENSMUSG00000105965.1 ENSMUSG00000105965 ENSMUST00000197114 Cycs-ps2 processed_pseudogene Interval_2712 chr1 43744635 43744945 + 0 NA promoter-TSS (ENSMUSG00000100764.1) antisense-promoter-TSS (ENSMUSG00000100764.1) -895 ENSMUSG00000100764.1 ENSMUSG00000100764 ENSMUST00000185910 Gm29155 antisense Interval_7276 chr1 128376614 128376926 + 0 NA intron (ENSMUSG00000026356.15, intron 1 of 1) protein_coding-intron (ENSMUSG00000026356.15, intron 8 of 15) 2717 ENSMUSG00000026356.15 ENSMUSG00000026356 ENSMUST00000064309 Dars protein_coding Interval_55328 chr14 83059101 83059289 + 0 NA Intergenic Intergenic 166358 ENSMUSG00000115031.1 ENSMUSG00000115031 ENSMUST00000228219 Gm49051 processed_pseudogene Interval_49341 chr13 111347980 111348469 + 0 NA Intergenic Intergenic 13451 ENSMUSG00000081277.1 ENSMUSG00000081277 ENSMUST00000119271 Gm15285 processed_pseudogene Interval_84755 chr19 16273510 16273679 + 0 NA intron (ENSMUSG00000024639.5, intron 2 of 2) protein_coding-intron (ENSMUSG00000024639.5, intron 2 of 6) -4203 ENSMUSG00000078528.2 ENSMUSG00000078528 ENSMUST00000163135 Gm17068 processed_pseudogene Interval_43849 chr13 37555401 37555730 + 0 NA Intergenic Intergenic 7787 ENSMUSG00000114665.1 ENSMUSG00000114665 ENSMUST00000225390 Lncbate6 lincRNA Interval_108 GL456239.1 264 587 + 0 NA NA NA NA NA Interval_30845 chr11 96840094 96840677 + 0 NA Intergenic Intergenic -9485 ENSMUSG00000018672.15 ENSMUSG00000018672 ENSMUST00000147710 Copz2 protein_coding Interval_56095 chr14 105662212 105662412 + 0 NA Intergenic Intergenic -18587 ENSMUSG00000110080.1 ENSMUSG00000110080 ENSMUST00000211689 Gm6145 processed_transcript Interval_127909 chr5 108866877 108867176 + 0 NA exon (ENSMUSG00000103580.1, exon 1 of 1) TEC-exon (ENSMUSG00000103580.1, exon 1 of 1) 2193 ENSMUSG00000103580.1 ENSMUSG00000103580 ENSMUST00000194341 Gm10417 TEC Interval_21269 chr10 127569438 127569863 + 0 NA intron (ENSMUSG00000040249.15, intron 34 of 88) protein_coding-intron (ENSMUSG00000040249.15, intron 34 of 88) -26442 ENSMUSG00000040249.15 ENSMUSG00000040249 ENSMUST00000118455 Lrp1 protein_coding Interval_126455 chr5 88667997 88668188 + 0 NA intron (ENSMUSG00000044221.14, intron 5 of 5) protein_coding-intron (ENSMUSG00000044221.14, intron 5 of 9) 7578 ENSMUSG00000044221.14 ENSMUSG00000044221 ENSMUST00000137725 Grsf1 protein_coding Interval_59287 chr15 50782027 50782784 + 0 NA intron (ENSMUSG00000038679.16, intron 5 of 7) protein_coding-intron (ENSMUSG00000038679.16, intron 5 of 6) 106709 ENSMUSG00000084458.1 ENSMUSG00000084458 ENSMUST00000122509 Mir1907 miRNA Interval_114573 chr4 82598240 82598685 + 0 NA intron (ENSMUSG00000008575.17, intron 1 of 1) protein_coding-intron (ENSMUSG00000008575.17, intron 1 of 1) -11143 ENSMUSG00000084851.1 ENSMUSG00000084851 ENSMUST00000137477 Gm11267 sense_intronic Interval_12335 chr1 192175156 192175959 + 0 NA Intergenic Intergenic 38212 ENSMUSG00000097316.2 ENSMUSG00000097316 ENSMUST00000195083 Gm10516 antisense Interval_76296 chr17 78872665 78873928 + 0 NA TTS (ENSMUSG00000024079.4) protein_coding-TTS (ENSMUSG00000024079.4) 9252 ENSMUSG00000024079.4 ENSMUSG00000024079 ENSMUST00000171451 Eif2ak2 protein_coding Interval_78004 chr18 6622092 6623364 + 0 NA intron (ENSMUSG00000039540.9, intron 3 of 7) protein_coding-intron (ENSMUSG00000039540.9, intron 3 of 9) 19099 ENSMUSG00000039540.9 ENSMUSG00000039540 ENSMUST00000234337 4921524L21Rik protein_coding Interval_40716 chr12 107883311 107884880 + 0 NA Intergenic Intergenic -100054 ENSMUSG00000086975.1 ENSMUSG00000086975 ENSMUST00000134448 Gm15208 lincRNA Interval_70362 chr17 8991321 8991589 + 0 NA intron (ENSMUSG00000023873.13, intron 3 of 9) protein_coding-intron (ENSMUSG00000023873.13, intron 1 of 9) 3113 ENSMUSG00000023873.13 ENSMUSG00000023873 ENSMUST00000136954 1700010I14Rik protein_coding Interval_145924 chr7 42001423 42001739 + 0 NA Intergenic Intergenic -19255 ENSMUSG00000092281.1 ENSMUSG00000092281 ENSMUST00000173370 Hmgb1-ps7 processed_pseudogene Interval_165195 chr9 45164902 45165662 + 0 NA Intergenic Intergenic 4664 ENSMUSG00000111811.1 ENSMUSG00000111811 ENSMUST00000215874 Gm39327 lincRNA Interval_81798 chr18 64858633 64858994 + 0 NA Intergenic Intergenic 29678 ENSMUSG00000114210.2 ENSMUSG00000114210 ENSMUST00000224731 A330084C13Rik antisense Interval_107175 chr3 104324674 104325412 + 0 NA Intergenic Intergenic 41570 ENSMUSG00000022187.2 ENSMUSG00000022187 ENSMUST00000056145 Gm5546 lincRNA Interval_49009 chr13 106884850 106886097 + 0 NA intron (ENSMUSG00000042590.17, intron 12 of 29) protein_coding-intron (ENSMUSG00000042590.17, intron 13 of 29) 33573 ENSMUSG00000100833.1 ENSMUSG00000100833 ENSMUST00000191363 Gm28988 antisense Interval_48974 chr13 106595678 106595966 + 0 NA Intergenic Intergenic -48762 ENSMUSG00000059877.3 ENSMUSG00000059877 ENSMUST00000076359 Dph3b-ps processed_pseudogene Interval_41879 chr13 3854457 3855552 + 0 NA TTS (ENSMUSG00000099269.3) protein_coding-TTS (ENSMUSG00000099269.3) 736 ENSMUSG00000099269.3 ENSMUSG00000099269 ENSMUST00000184271 Calm5 protein_coding Interval_93112 chr2 70321807 70322324 + 0 NA intron (ENSMUSG00000042064.13, intron 28 of 33) protein_coding-intron (ENSMUSG00000042064.13, intron 29 of 34) -136917 ENSMUSG00000047965.9 ENSMUSG00000047965 ENSMUST00000140507 Rpl9-ps7 processed_pseudogene Interval_18618 chr10 88546744 88548233 + 0 NA intron (ENSMUSG00000020061.18, intron 15 of 26) protein_coding-intron (ENSMUSG00000020061.18, intron 15 of 28) -54984 ENSMUSG00000112841.1 ENSMUSG00000112841 ENSMUST00000217743 Gm48752 TEC Interval_116684 chr4 116644040 116644959 + 0 NA intron (ENSMUSG00000028692.14, intron 2 of 5) protein_coding-intron (ENSMUSG00000028692.14, intron 2 of 8) 4975 ENSMUSG00000028692.14 ENSMUSG00000028692 ENSMUST00000128059 Akr1a1 protein_coding Interval_127601 chr5 105714398 105715881 + 0 NA intron (ENSMUSG00000046079.16, intron 1 of 1) protein_coding-intron (ENSMUSG00000046079.16, intron 1 of 2) -16250 ENSMUSG00000046079.16 ENSMUSG00000046079 ENSMUST00000134605 Lrrc8d protein_coding Interval_80267 chr18 38631390 38632654 + 0 NA intron (ENSMUSG00000118257.1, intron 2 of 2) lincRNA-intron (ENSMUSG00000118257.1, intron 2 of 3) 4735 ENSMUSG00000118257.1 ENSMUSG00000118257 ENSMUST00000134388 9630014M24Rik lincRNA Interval_91099 chr2 35022389 35022888 + 0 NA intron (ENSMUSG00000026874.10, intron 20 of 40) protein_coding-intron (ENSMUSG00000026874.10, intron 20 of 40) -2993 ENSMUSG00000026874.10 ENSMUSG00000026874 ENSMUST00000151628 Hc protein_coding Interval_26050 chr11 53762501 53764403 + 0 NA TTS (ENSMUSG00000099153.1) miRNA-TTS (ENSMUSG00000099153.1) 202 ENSMUSG00000099153.1 ENSMUSG00000099153 ENSMUST00000184599 Mir7671 miRNA Interval_33288 chr11 115722312 115723138 + 0 NA Intergenic Intergenic 2083 ENSMUSG00000083394.2 ENSMUSG00000083394 ENSMUST00000118352 Gm11703 processed_pseudogene Interval_78860 chr18 21021622 21022464 + 0 NA exon (ENSMUSG00000024317.15, exon 3 of 3) protein_coding-exon (ENSMUSG00000024317.15, exon 3 of 3) 19948 ENSMUSG00000024317.15 ENSMUSG00000024317 ENSMUST00000234169 Rnf138 protein_coding Interval_31844 chr11 103311751 103312527 + 0 NA Intergenic Intergenic 21256 ENSMUSG00000034255.17 ENSMUSG00000034255 ENSMUST00000092557 Arhgap27 protein_coding Interval_154151 chr8 13077425 13078837 + 0 NA exon (ENSMUSG00000038542.14, exon 14 of 14) protein_coding-exon (ENSMUSG00000038542.14, exon 14 of 14) 2054 ENSMUSG00000091443.1 ENSMUSG00000091443 ENSMUST00000165885 Gm17023 antisense Interval_95049 chr2 103474512 103474971 + 0 NA intron (ENSMUSG00000027187.10, intron 2 of 5) protein_coding-intron (ENSMUSG00000027187.10, intron 2 of 12) 10384 ENSMUSG00000027187.10 ENSMUSG00000027187 ENSMUST00000111168 Cat protein_coding Interval_172722 chrX 47936648 47937181 + 0 NA intron (ENSMUSG00000001173.15, intron 11 of 16) protein_coding-intron (ENSMUSG00000001173.15, intron 12 of 23) -1477 ENSMUSG00000001173.15 ENSMUSG00000001173 ENSMUST00000115013 Ocrl protein_coding Interval_135377 chr6 38716262 38716486 + 0 NA intron (ENSMUSG00000061436.15, intron 11 of 14) protein_coding-intron (ENSMUSG00000061436.15, intron 11 of 14) 52495 ENSMUSG00000079598.4 ENSMUSG00000079598 ENSMUST00000238216 Clec2l protein_coding Interval_66628 chr16 35738061 35738687 + 0 NA intron (ENSMUSG00000022848.8, intron 1 of 7) protein_coding-intron (ENSMUSG00000022848.8, intron 2 of 8) -16141 ENSMUSG00000087793.1 ENSMUSG00000087793 ENSMUST00000157168 Gm25967 snoRNA Interval_3636 chr1 60169059 60169253 + 0 NA Intergenic Intergenic 51901 ENSMUSG00000082609.1 ENSMUSG00000082609 ENSMUST00000118718 Gm15464 processed_pseudogene Interval_76507 chr17 80651516 80653605 + 0 NA intron (ENSMUSG00000024242.15, intron 6 of 32) protein_coding-intron (ENSMUSG00000024242.15, intron 6 of 33) -27574 ENSMUSG00000024242.15 ENSMUSG00000024242 ENSMUST00000234486 Map4k3 protein_coding Interval_83359 chr18 84555331 84556165 + 0 NA intron (ENSMUSG00000048410.17, intron 1 of 1) protein_coding-intron (ENSMUSG00000048410.17, intron 1 of 2) -69997 ENSMUSG00000117676.1 ENSMUSG00000117676 ENSMUST00000236074 Gm50314 antisense Interval_36817 chr12 54342098 54342297 + 0 NA Intergenic Intergenic -25182 ENSMUSG00000112705.1 ENSMUSG00000112705 ENSMUST00000217997 Gm47552 lincRNA Interval_54091 chr14 65171764 65172251 + 0 NA promoter-TSS (ENSMUSG00000114693.1) lincRNA-promoter-TSS (ENSMUSG00000114693.1) -2062 ENSMUSG00000114693.1 ENSMUSG00000114693 ENSMUST00000225755 Gm41177 lincRNA Interval_122410 chr5 22308958 22309432 + 0 NA intron (ENSMUSG00000042453.14, intron 1 of 7) protein_coding-intron (ENSMUSG00000042453.14, intron 1 of 63) 16408 ENSMUSG00000089793.1 ENSMUSG00000089793 ENSMUST00000159075 Gm16112 processed_pseudogene Interval_122609 chr5 24181376 24182983 + 0 NA TTS (ENSMUSG00000048439.15) protein_coding-TTS (ENSMUSG00000048439.15) 14671 ENSMUSG00000048439.15 ENSMUSG00000048439 ENSMUST00000124150 Nupl2 protein_coding Interval_133255 chr5 150891152 150891805 + 0 NA Intergenic Intergenic -8836 ENSMUSG00000107047.1 ENSMUSG00000107047 ENSMUST00000200887 Gm43298 lincRNA Interval_149922 chr7 102664418 102665309 + 0 NA promoter-TSS (ENSMUSG00000073969.3) protein_coding-promoter-TSS (ENSMUSG00000073969.3) -36 ENSMUSG00000073969.3 ENSMUSG00000073969 ENSMUST00000098219 Olfr556 protein_coding Interval_22047 chr11 5987911 5988497 + 0 NA intron (ENSMUSG00000057897.14, intron 10 of 10) protein_coding-intron (ENSMUSG00000057897.14, intron 11 of 18) -4066 ENSMUSG00000057897.14 ENSMUSG00000057897 ENSMUST00000129098 Camk2b protein_coding Interval_102364 chr3 22192581 22193237 + 0 NA intron (ENSMUSG00000027630.13, intron 9 of 15) protein_coding-intron (ENSMUSG00000027630.13, intron 9 of 15) -58465 ENSMUSG00000087775.1 ENSMUSG00000087775 ENSMUST00000157150 Rprl2 ribozyme Interval_45853 chr13 58556237 58556598 + 0 NA intron (ENSMUSG00000021553.14, intron 1 of 3) protein_coding-intron (ENSMUSG00000021553.14, intron 17 of 17) 10389 ENSMUSG00000114234.1 ENSMUSG00000114234 ENSMUST00000223882 Gm3131 processed_pseudogene Interval_131814 chr5 140055380 140055855 + 0 NA intron (ENSMUSG00000029554.15, intron 6 of 6) protein_coding-intron (ENSMUSG00000029554.15, intron 17 of 17) -18488 ENSMUSG00000085673.1 ENSMUSG00000085673 ENSMUST00000142625 Gm16122 antisense Interval_38801 chr12 82452269 82453012 + 0 NA TTS (ENSMUSG00000042700.16) protein_coding-TTS (ENSMUSG00000042700.16) 43897 ENSMUSG00000094374.2 ENSMUSG00000094374 ENSMUST00000179295 Gm5435 processed_pseudogene Interval_140790 chr6 121366742 121367377 + 0 NA Intergenic Intergenic 10239 ENSMUSG00000030109.15 ENSMUSG00000030109 ENSMUST00000170339 Slc6a12 protein_coding Interval_142478 chr6 142741632 142742505 + 0 NA Intergenic Intergenic -14707 ENSMUSG00000030282.14 ENSMUSG00000030282 ENSMUST00000146643 Cmas protein_coding Interval_123938 chr5 36750124 36750531 + 0 NA exon (ENSMUSG00000107081.1, exon 2 of 2) antisense-exon (ENSMUSG00000107081.1, exon 2 of 2) -1677 ENSMUSG00000060708.4 ENSMUSG00000060708 ENSMUST00000071949 Bloc1s4 protein_coding Interval_172785 chrX 48902717 48903928 + 0 NA Intergenic Intergenic -13147 ENSMUSG00000081526.1 ENSMUSG00000081526 ENSMUST00000119619 Gm7219 processed_pseudogene Interval_46993 chr13 74025246 74026694 + 0 NA intron (ENSMUSG00000021573.15, intron 2 of 3) protein_coding-intron (ENSMUSG00000021573.15, intron 2 of 3) -5836 ENSMUSG00000080966.1 ENSMUSG00000080966 ENSMUST00000120029 Gm6263 processed_pseudogene Interval_10149 chr1 166124668 166125804 + 0 NA intron (ENSMUSG00000026564.9, intron 2 of 5) protein_coding-intron (ENSMUSG00000026564.9, intron 2 of 5) 2686 ENSMUSG00000026564.9 ENSMUSG00000026564 ENSMUST00000085992 Dusp27 protein_coding Interval_63276 chr15 100050559 100051332 + 0 NA intron (ENSMUSG00000023026.16, intron 1 of 37) protein_coding-intron (ENSMUSG00000023026.16, intron 1 of 37) 40812 ENSMUSG00000116021.1 ENSMUSG00000116021 ENSMUST00000230449 Gm49474 TEC Interval_160744 chr8 111921140 111921328 + 0 NA intron (ENSMUSG00000031951.8, intron 2 of 6) protein_coding-intron (ENSMUSG00000031951.8, intron 2 of 6) 6926 ENSMUSG00000031951.8 ENSMUSG00000031951 ENSMUST00000213050 Tmem231 protein_coding Interval_100550 chr2 170078561 170079383 + 0 NA Intergenic Intergenic 69131 ENSMUSG00000052056.14 ENSMUSG00000052056 ENSMUST00000149318 Zfp217 protein_coding Interval_4939 chr1 82819349 82821082 + 0 NA exon (ENSMUSG00000100170.1, exon 2 of 2) lincRNA-exon (ENSMUSG00000100170.1, exon 2 of 2) 380 ENSMUSG00000100170.1 ENSMUSG00000100170 ENSMUST00000186334 Gm28942 lincRNA Interval_133775 chr6 12009716 12010021 + 0 NA intron (ENSMUSG00000029629.17, intron 16 of 17) protein_coding-intron (ENSMUSG00000029629.17, intron 16 of 17) -34511 ENSMUSG00000029629.17 ENSMUSG00000029629 ENSMUST00000214543 Phf14 protein_coding Interval_128090 chr5 110808065 110810534 + 0 NA intron (ENSMUSG00000029512.11, intron 1 of 27) protein_coding-intron (ENSMUSG00000029512.11, intron 1 of 27) 754 ENSMUSG00000029512.11 ENSMUSG00000029512 ENSMUST00000198470 Ulk1 protein_coding Interval_100724 chr2 172045977 172046758 + 0 NA promoter-TSS (ENSMUSG00000087409.1) antisense-promoter-TSS (ENSMUSG00000087409.1) -159 ENSMUSG00000087409.1 ENSMUSG00000087409 ENSMUST00000137886 Gm14271 antisense Interval_150048 chr7 105399543 105400684 + 0 NA promoter-TSS (ENSMUSG00000044465.19) protein_coding-promoter-TSS (ENSMUSG00000044465.19) -397 ENSMUSG00000110366.1 ENSMUSG00000110366 ENSMUST00000211520 Gm45885 bidirectional_promoter_lncRNA Interval_36760 chr12 53230071 53230318 + 0 NA Intergenic Intergenic -17963 ENSMUSG00000021010.9 ENSMUSG00000021010 ENSMUST00000223057 Npas3 protein_coding Interval_157106 chr8 65223037 65223543 + 0 NA Intergenic Intergenic 39046 ENSMUSG00000110283.1 ENSMUSG00000110283 ENSMUST00000211021 Gm45249 processed_pseudogene Interval_16106 chr10 60768263 60769653 + 0 NA intron (ENSMUSG00000020099.8, intron 13 of 15) protein_coding-intron (ENSMUSG00000020099.8, intron 14 of 16) -16175 ENSMUSG00000020100.15 ENSMUSG00000020100 ENSMUST00000144989 Slc29a3 protein_coding Interval_115657 chr4 101716857 101718140 + 0 NA promoter-TSS (ENSMUSG00000057722.17) protein_coding-promoter-TSS (ENSMUSG00000057722.17) -53870 ENSMUSG00000057722.17 ENSMUSG00000057722 ENSMUST00000151733 Lepr protein_coding Interval_120259 chr4 144996948 144997542 + 0 NA intron (ENSMUSG00000020220.16, intron 21 of 23) protein_coding-intron (ENSMUSG00000020220.16, intron 65 of 67) -38397 ENSMUSG00000103911.1 ENSMUSG00000103911 ENSMUST00000193467 Gm38074 TEC Interval_73920 chr17 45486948 45487710 + 0 NA Intergenic Intergenic -12465 ENSMUSG00000023935.10 ENSMUSG00000023935 ENSMUST00000233583 Spats1 protein_coding Interval_4201 chr1 71592537 71593192 + 0 NA intron (ENSMUSG00000026193.15, intron 40 of 43) protein_coding-intron (ENSMUSG00000026193.15, intron 42 of 45) 35685 ENSMUSG00000026192.13 ENSMUSG00000026192 ENSMUST00000154855 Atic protein_coding Interval_83445 chr18 85595160 85596278 + 0 NA Intergenic Intergenic 121006 ENSMUSG00000117854.1 ENSMUSG00000117854 ENSMUST00000237113 Gm7612 processed_pseudogene Interval_134152 chr6 22014231 22015112 + 0 NA intron (ENSMUSG00000062980.15, intron 1 of 8) protein_coding-intron (ENSMUSG00000062980.15, intron 1 of 9) -11272 ENSMUSG00000062980.15 ENSMUSG00000062980 ENSMUST00000154734 Cped1 protein_coding Interval_91612 chr2 44578732 44579043 + 0 NA intron (ENSMUSG00000036890.13, intron 5 of 5) protein_coding-intron (ENSMUSG00000036890.13, intron 4 of 7) 149952 ENSMUSG00000088124.1 ENSMUSG00000088124 ENSMUST00000157499 Gm22867 snRNA Interval_2580 chr1 40815422 40816256 + 0 NA intron (ENSMUSG00000079588.3, intron 3 of 4) protein_coding-intron (ENSMUSG00000079588.3, intron 3 of 4) 10238 ENSMUSG00000079588.3 ENSMUSG00000079588 ENSMUST00000114765 Tmem182 protein_coding Interval_95605 chr2 112743800 112744066 + 0 NA intron (ENSMUSG00000057378.15, intron 60 of 103) protein_coding-intron (ENSMUSG00000057378.15, intron 60 of 102) -87385 ENSMUSG00000057378.15 ENSMUSG00000057378 ENSMUST00000208135 Ryr3 protein_coding Interval_143673 chr7 14318861 14319051 + 0 NA Intergenic Intergenic 14176 ENSMUSG00000098506.2 ENSMUSG00000098506 ENSMUST00000185066 Phf20-ps processed_pseudogene Interval_83874 chr19 5272279 5273736 + 0 NA promoter-TSS (ENSMUSG00000024855.10) protein_coding-promoter-TSS (ENSMUSG00000024855.10) 11401 ENSMUSG00000024853.10 ENSMUSG00000024853 ENSMUST00000237512 Sf3b2 protein_coding Interval_171056 chr9 114026233 114027232 + 0 NA promoter-TSS (ENSMUSG00000032507.15) protein_coding-promoter-TSS (ENSMUSG00000032507.15) -6 ENSMUSG00000032507.15 ENSMUSG00000032507 ENSMUST00000141832 Fbxl2 protein_coding Interval_33247 chr11 115457300 115457690 + 0 NA Intergenic Intergenic -5011 ENSMUSG00000045775.15 ENSMUSG00000045775 ENSMUST00000140739 Slc16a5 protein_coding Interval_117752 chr4 126022464 126023607 + 0 NA Intergenic Intergenic -1691 ENSMUSG00000028859.14 ENSMUSG00000028859 ENSMUST00000140426 Csf3r protein_coding Interval_162241 chr8 126387713 126387934 + 0 NA intron (ENSMUSG00000057060.8, intron 5 of 7) protein_coding-intron (ENSMUSG00000057060.8, intron 4 of 6) -34705 ENSMUSG00000051671.7 ENSMUSG00000051671 ENSMUST00000211868 Coa6 protein_coding Interval_158785 chr8 86512679 86513317 + 0 NA intron (ENSMUSG00000036872.16, intron 23 of 29) protein_coding-intron (ENSMUSG00000036872.16, intron 22 of 28) 53592 ENSMUSG00000036872.16 ENSMUSG00000036872 ENSMUST00000152438 Abcc12 protein_coding Interval_15463 chr10 47365104 47365379 + 0 NA Intergenic Intergenic -39569 ENSMUSG00000111072.1 ENSMUSG00000111072 ENSMUST00000217393 Gm9068 processed_pseudogene Interval_128587 chr5 114183348 114183775 + 0 NA intron (ENSMUSG00000042010.16, intron 1 of 4) protein_coding-intron (ENSMUSG00000042010.16, intron 1 of 51) 7655 ENSMUSG00000042010.16 ENSMUSG00000042010 ENSMUST00000142489 Acacb protein_coding Interval_53795 chr14 61866862 61867470 + 0 NA Intergenic Intergenic -54210 ENSMUSG00000114706.1 ENSMUSG00000114706 ENSMUST00000224682 Gm47952 processed_pseudogene Interval_53521 chr14 58100970 58101920 + 0 NA intron (ENSMUSG00000021974.15, intron 2 of 2) protein_coding-intron (ENSMUSG00000021974.15, intron 2 of 2) 4684 ENSMUSG00000091132.1 ENSMUSG00000091132 ENSMUST00000163985 Gm17109 processed_pseudogene Interval_23844 chr11 27064301 27065752 + 0 NA Intergenic Intergenic 13329 ENSMUSG00000083895.1 ENSMUSG00000083895 ENSMUST00000120189 Gm12074 processed_pseudogene Interval_85096 chr19 22797117 22797378 + 0 NA intron (ENSMUSG00000052387.16, intron 8 of 24) protein_coding-intron (ENSMUSG00000052387.16, intron 8 of 26) 46642 ENSMUSG00000065507.3 ENSMUSG00000065507 ENSMUST00000083573 Mir204 miRNA Interval_32884 chr11 112801354 112801763 + 0 NA Intergenic Intergenic -2550 ENSMUSG00000075437.4 ENSMUSG00000075437 ENSMUST00000127337 Gm11681 lincRNA Interval_10124 chr1 165940763 165941668 + 0 NA promoter-TSS (ENSMUSG00000099008.1) processed_pseudogene-promoter-TSS (ENSMUSG00000099008.1) -403 ENSMUSG00000099008.1 ENSMUSG00000099008 ENSMUST00000184037 Gm17976 processed_pseudogene Interval_106774 chr3 100684404 100686360 + 0 NA promoter-TSS (ENSMUSG00000008763.16) protein_coding-promoter-TSS (ENSMUSG00000008763.16) -257 ENSMUSG00000008763.16 ENSMUSG00000008763 ENSMUST00000146818 Man1a2 protein_coding Interval_27809 chr11 70106964 70107398 + 0 NA TTS (ENSMUSG00000040963.15) protein_coding-TTS (ENSMUSG00000040963.15) 9489 ENSMUSG00000040963.15 ENSMUSG00000040963 ENSMUST00000179757 Asgr2 protein_coding Interval_7716 chr1 133246087 133246512 + 0 NA intron (ENSMUSG00000041757.17, intron 1 of 22) protein_coding-intron (ENSMUSG00000041757.17, intron 1 of 26) -10243 ENSMUSG00000041757.17 ENSMUSG00000041757 ENSMUST00000190208 Plekha6 protein_coding Interval_25641 chr11 50364518 50364962 + 0 NA Intergenic Intergenic -6861 ENSMUSG00000076450.1 ENSMUSG00000076450 ENSMUST00000103251 Mir804 miRNA Interval_28240 chr11 74619108 74620307 + 0 NA exon (ENSMUSG00000069814.6, exon 1 of 4) protein_coding-exon (ENSMUSG00000069814.6, exon 1 of 4) 102 ENSMUSG00000069814.6 ENSMUSG00000069814 ENSMUST00000100866 Ccdc92b protein_coding Interval_1608 chr1 29839509 29839754 + 0 NA Intergenic Intergenic 26477 ENSMUSG00000118548.1 ENSMUSG00000118548 ENSMUST00000239107 AC125120.1 processed_pseudogene Interval_77252 chr17 87590472 87592287 + 0 NA Intergenic Intergenic -19725 ENSMUSG00000117414.1 ENSMUSG00000117414 ENSMUST00000234992 Gm46587 lincRNA Interval_62651 chr15 95962128 95963441 + 0 NA intron (ENSMUSG00000064210.7, intron 18 of 20) protein_coding-intron (ENSMUSG00000064210.7, intron 17 of 19) 31345 ENSMUSG00000115049.1 ENSMUSG00000115049 ENSMUST00000227616 Gm49172 processed_transcript Interval_52157 chr14 37349933 37350160 + 0 NA Intergenic Intergenic 87574 ENSMUSG00000077786.1 ENSMUSG00000077786 ENSMUST00000104598 Gm23909 snoRNA Interval_11162 chr1 179765940 179766681 + 0 NA promoter-TSS (ENSMUSG00000026491.13) protein_coding-promoter-TSS (ENSMUSG00000026491.13) 35762 ENSMUSG00000026491.13 ENSMUSG00000026491 ENSMUST00000147137 Ahctf1 protein_coding Interval_48825 chr13 103748040 103748818 + 0 NA intron (ENSMUSG00000032621.8, intron 11 of 11) protein_coding-intron (ENSMUSG00000032621.8, intron 10 of 11) 20919 ENSMUSG00000032621.8 ENSMUSG00000032621 ENSMUST00000211139 Srek1 protein_coding Interval_56952 chr14 123993821 123994039 + 0 NA intron (ENSMUSG00000099994.1, intron 1 of 3) protein_coding-intron (ENSMUSG00000025551.13, intron 3 of 4) 6295 ENSMUSG00000099994.1 ENSMUSG00000099994 ENSMUST00000190088 1700024B18Rik antisense Interval_1578 chr1 27442931 27443450 + 0 NA Intergenic Intergenic -106422 ENSMUSG00000100310.1 ENSMUSG00000100310 ENSMUST00000188432 Gm19641 processed_pseudogene Interval_36275 chr12 40546408 40547380 + 0 NA intron (ENSMUSG00000035954.10, intron 1 of 5) protein_coding-intron (ENSMUSG00000035954.10, intron 1 of 52) 100811 ENSMUSG00000035954.10 ENSMUSG00000035954 ENSMUST00000220850 Dock4 protein_coding Interval_25579 chr11 49903068 49903762 + 0 NA intron (ENSMUSG00000020374.16, intron 1 of 13) protein_coding-intron (ENSMUSG00000020374.16, intron 1 of 13) 7684 ENSMUSG00000080487.1 ENSMUSG00000080487 ENSMUST00000116837 Gm23492 miRNA Interval_76152 chr17 75614976 75616072 + 0 NA Intergenic Intergenic -45716 ENSMUSG00000117540.1 ENSMUSG00000117540 ENSMUST00000234396 Gm9360 processed_pseudogene Interval_35183 chr12 17873173 17874554 + 0 NA Intergenic Intergenic -8334 ENSMUSG00000113294.1 ENSMUSG00000113294 ENSMUST00000223226 Gm49326 unprocessed_pseudogene Interval_144368 chr7 24715169 24715634 + 0 NA TTS (ENSMUSG00000045587.9) protein_coding-TTS (ENSMUSG00000045587.9) 6159 ENSMUSG00000045587.9 ENSMUSG00000045587 ENSMUST00000051714 Lypd10 protein_coding Interval_96479 chr2 124719621 124720896 + 0 NA Intergenic Intergenic 11603 ENSMUSG00000087450.1 ENSMUSG00000087450 ENSMUST00000137397 Gm13994 lincRNA Interval_156019 chr8 42366226 42366948 + 0 NA Intergenic Intergenic 119676 ENSMUSG00000053038.8 ENSMUSG00000053038 ENSMUST00000065243 Gm6180 processed_pseudogene Interval_6747 chr1 119157141 119157610 + 0 NA promoter-TSS (ENSMUSG00000096939.1) processed_pseudogene-promoter-TSS (ENSMUSG00000096939.1) -211 ENSMUSG00000096939.1 ENSMUSG00000096939 ENSMUST00000181691 Gm8321 processed_pseudogene Interval_168279 chr9 78389747 78390532 + 0 NA promoter-TSS (ENSMUSG00000083032.1) processed_pseudogene-promoter-TSS (ENSMUSG00000083032.1) -672 ENSMUSG00000083032.1 ENSMUSG00000083032 ENSMUST00000119091 Gm8087 processed_pseudogene Interval_27272 chr11 65142556 65142831 + 0 NA intron (ENSMUSG00000033389.16, intron 1 of 20) protein_coding-intron (ENSMUSG00000033389.16, intron 1 of 20) 17198 ENSMUSG00000020548.10 ENSMUSG00000020548 ENSMUST00000108696 1700086D15Rik protein_coding Interval_15917 chr10 59280068 59280519 + 0 NA Intergenic Intergenic -43075 ENSMUSG00000019916.14 ENSMUSG00000019916 ENSMUST00000105466 P4ha1 protein_coding Interval_125634 chr5 72913675 72915209 + 0 NA promoter-TSS (ENSMUSG00000036087.18) protein_coding-promoter-TSS (ENSMUSG00000036087.18) -226 ENSMUSG00000036087.18 ENSMUSG00000036087 ENSMUST00000145939 Slain2 protein_coding Interval_25130 chr11 44398523 44399563 + 0 NA Intergenic Intergenic -1020 ENSMUSG00000004296.14 ENSMUSG00000004296 ENSMUST00000102796 Il12b protein_coding Interval_143996 chr7 18858012 18859025 + 0 NA intron (ENSMUSG00000040987.15, intron 5 of 6) protein_coding-intron (ENSMUSG00000040987.15, intron 5 of 5) -12852 ENSMUSG00000030413.7 ENSMUSG00000030413 ENSMUST00000206481 Pglyrp1 protein_coding Interval_87600 chr19 53671404 53671668 + 0 NA Intergenic Intergenic -5770 ENSMUSG00000043639.15 ENSMUSG00000043639 ENSMUST00000161856 Rbm20 protein_coding Interval_95781 chr2 116129579 116129891 + 0 NA Intergenic Intergenic -53639 ENSMUSG00000103562.1 ENSMUSG00000103562 ENSMUST00000195368 2810405F15Rik TEC Interval_24585 chr11 34814252 34816146 + 0 NA intron (ENSMUSG00000069910.2, intron 10 of 11) protein_coding-intron (ENSMUSG00000069910.2, intron 10 of 11) 8752 ENSMUSG00000069910.2 ENSMUSG00000069910 ENSMUST00000148387 Spdl1 protein_coding Interval_103978 chr3 56000237 56000474 + 0 NA intron (ENSMUSG00000027799.12, intron 24 of 57) protein_coding-intron (ENSMUSG00000027799.12, intron 24 of 57) 16813 ENSMUSG00000104938.1 ENSMUSG00000104938 ENSMUST00000200303 Gm42840 TEC Interval_46984 chr13 73930935 73931179 + 0 NA intron (ENSMUSG00000021569.10, intron 3 of 12) protein_coding-intron (ENSMUSG00000021569.10, intron 3 of 12) 5140 ENSMUSG00000021569.10 ENSMUSG00000021569 ENSMUST00000223017 Trip13 protein_coding Interval_157131 chr8 65911720 65912598 + 0 NA intron (ENSMUSG00000036469.16, intron 2 of 7) protein_coding-intron (ENSMUSG00000036469.16, intron 2 of 7) 10102 ENSMUSG00000065297.1 ENSMUSG00000065297 ENSMUST00000083363 Gm26123 snoRNA Interval_146120 chr7 44102800 44103012 + 0 NA intron (ENSMUSG00000066516.5, intron 1 of 4) protein_coding-intron (ENSMUSG00000066516.5, intron 1 of 4) 578 ENSMUSG00000066516.5 ENSMUSG00000066516 ENSMUST00000085455 Klk1b21 protein_coding Interval_111552 chr4 22893874 22894137 + 0 NA Intergenic Intergenic 44430 ENSMUSG00000028244.6 ENSMUSG00000028244 ENSMUST00000123729 1700025O08Rik lincRNA Interval_129863 chr5 122794328 122794554 + 0 NA promoter-TSS (ENSMUSG00000029472.13) protein_coding-promoter-TSS (ENSMUSG00000029472.13) 14916 ENSMUSG00000105613.1 ENSMUSG00000105613 ENSMUST00000199279 Gm43684 TEC Interval_7831 chr1 134005730 134006502 + 0 NA Intergenic Intergenic 27262 ENSMUSG00000099507.1 ENSMUSG00000099507 ENSMUST00000186040 Gm18970 processed_pseudogene Interval_127257 chr5 101907735 101908076 + 0 NA intron (ENSMUSG00000043940.15, intron 24 of 64) protein_coding-intron (ENSMUSG00000043940.15, intron 27 of 66) -48702 ENSMUSG00000106451.1 ENSMUSG00000106451 ENSMUST00000196920 Gm42934 TEC Interval_105722 chr3 88921464 88921816 + 0 NA exon (ENSMUSG00000068921.14, exon 13 of 13) protein_coding-exon (ENSMUSG00000068921.14, exon 13 of 13) -7737 ENSMUSG00000068922.14 ENSMUSG00000068922 ENSMUST00000128988 Msto1 protein_coding Interval_124503 chr5 49606546 49607509 + 0 NA Intergenic Intergenic 54869 ENSMUSG00000083477.2 ENSMUSG00000083477 ENSMUST00000120352 Gm5555 processed_pseudogene Interval_87200 chr19 46834236 46834490 + 0 NA intron (ENSMUSG00000064105.13, intron 1 of 1) protein_coding-intron (ENSMUSG00000064105.13, intron 1 of 6) -31297 ENSMUSG00000064105.13 ENSMUSG00000064105 ENSMUST00000235671 Cnnm2 protein_coding Interval_24777 chr11 37378503 37378834 + 0 NA Intergenic Intergenic -280321 ENSMUSG00000087388.1 ENSMUSG00000087388 ENSMUST00000131013 Gm12128 lincRNA Interval_54068 chr14 64970072 64971039 + 0 NA intron (ENSMUSG00000021975.9, intron 1 of 16) protein_coding-intron (ENSMUSG00000021975.9, intron 1 of 16) 20510 ENSMUSG00000021975.9 ENSMUSG00000021975 ENSMUST00000225790 Ints9 protein_coding Interval_27902 chr11 70725459 70726783 + 0 NA exon (ENSMUSG00000020821.17, exon 21 of 22) protein_coding-exon (ENSMUSG00000020821.17, exon 21 of 22) 20131 ENSMUSG00000105932.1 ENSMUSG00000105932 ENSMUST00000197857 Mir6925 miRNA Interval_116156 chr4 108209350 108209576 + 0 NA intron (ENSMUSG00000034645.14, intron 2 of 13) protein_coding-intron (ENSMUSG00000034645.14, intron 2 of 13) 8459 ENSMUSG00000034645.14 ENSMUSG00000034645 ENSMUST00000106690 Zyg11a protein_coding Interval_143255 chr7 4792556 4794710 + 0 NA promoter-TSS (ENSMUSG00000030432.12) protein_coding-promoter-TSS (ENSMUSG00000030432.12) 236 ENSMUSG00000030432.12 ENSMUSG00000030432 ENSMUST00000129888 Rpl28 protein_coding Interval_84022 chr19 6164633 6164948 + 0 NA exon (ENSMUSG00000039699.14, exon 1 of 3) protein_coding-exon (ENSMUSG00000039699.14, exon 1 of 3) 350 ENSMUSG00000039699.14 ENSMUSG00000039699 ENSMUST00000141858 Batf2 protein_coding Interval_85705 chr19 29823713 29825592 + 0 NA Intergenic Intergenic -11698 ENSMUSG00000074909.5 ENSMUSG00000074909 ENSMUST00000235906 Ranbp6 protein_coding Interval_100166 chr2 167439357 167440026 + 0 NA intron (ENSMUSG00000039463.14, intron 3 of 8) protein_coding-intron (ENSMUSG00000039463.14, intron 3 of 16) -11364 ENSMUSG00000039463.14 ENSMUSG00000039463 ENSMUST00000148454 Slc9a8 protein_coding Interval_138973 chr6 93933031 93933241 + 0 NA intron (ENSMUSG00000045095.16, intron 2 of 24) protein_coding-intron (ENSMUSG00000045095.16, intron 2 of 21) -20632 ENSMUSG00000045095.16 ENSMUSG00000045095 ENSMUST00000203034 Magi1 protein_coding Interval_17956 chr10 81062719 81063128 + 0 NA Intergenic Intergenic -2779 ENSMUSG00000004937.6 ENSMUSG00000004937 ENSMUST00000220202 Sgta protein_coding Interval_89292 chr2 18912295 18913315 + 0 NA intron (ENSMUSG00000026737.12, intron 1 of 9) protein_coding-intron (ENSMUSG00000026737.12, intron 1 of 9) -6531 ENSMUSG00000026737.12 ENSMUSG00000026737 ENSMUST00000152981 Pip4k2a protein_coding Interval_28911 chr11 79223584 79225169 + 0 NA Intergenic Intergenic 11580 ENSMUSG00000081000.1 ENSMUSG00000081000 ENSMUST00000121698 Gm11200 processed_pseudogene Interval_154478 chr8 18581881 18582318 + 0 NA Intergenic Intergenic -13477 ENSMUSG00000039842.15 ENSMUSG00000039842 ENSMUST00000141244 Mcph1 protein_coding Interval_102991 chr3 34061958 34062564 + 0 NA intron (ENSMUSG00000027680.15, intron 14 of 15) protein_coding-intron (ENSMUSG00000027680.15, intron 13 of 16) -6832 ENSMUSG00000105135.1 ENSMUSG00000105135 ENSMUST00000198616 Gm43667 TEC Interval_142462 chr6 142532429 142532887 + 0 NA Intergenic Intergenic -24715 ENSMUSG00000030246.12 ENSMUSG00000030246 ENSMUST00000134191 Ldhb protein_coding Interval_92658 chr2 62085741 62086257 + 0 NA intron (ENSMUSG00000026904.17, intron 1 of 26) protein_coding-intron (ENSMUSG00000026904.17, intron 1 of 24) -115327 ENSMUSG00000083018.1 ENSMUSG00000083018 ENSMUST00000121668 Gm13555 processed_pseudogene Interval_41401 chr12 113355087 113356046 + 0 NA TTS (ENSMUSG00000076615.4) IG_C_gene-TTS (ENSMUSG00000076615.4) 5666 ENSMUSG00000076615.4 ENSMUSG00000076615 ENSMUST00000103423 Ighg3 IG_C_gene Interval_44907 chr13 49652399 49653689 + 0 NA promoter-TSS (ENSMUSG00000021391.10) protein_coding-promoter-TSS (ENSMUSG00000021391.10) -59 ENSMUSG00000021392.8 ENSMUSG00000021392 ENSMUST00000221328 Nol8 protein_coding Interval_99922 chr2 165830553 165832535 + 0 NA intron (ENSMUSG00000039671.18, intron 10 of 22) protein_coding-intron (ENSMUSG00000039671.18, intron 11 of 23) -26140 ENSMUSG00000085274.1 ENSMUSG00000085274 ENSMUST00000155786 BC046401 processed_transcript Interval_93482 chr2 73442205 73442433 + 0 NA intron (ENSMUSG00000075284.10, intron 3 of 4) protein_coding-intron (ENSMUSG00000075284.10, intron 3 of 7) 10391 ENSMUSG00000075284.10 ENSMUSG00000075284 ENSMUST00000129594 Wipf1 protein_coding Interval_20662 chr10 120100555 120101428 + 0 NA intron (ENSMUSG00000020228.11, intron 5 of 11) protein_coding-intron (ENSMUSG00000020228.11, intron 6 of 12) 11874 ENSMUSG00000020228.11 ENSMUSG00000020228 ENSMUST00000154501 Helb protein_coding Interval_105823 chr3 89522512 89522766 + 0 NA intron (ENSMUSG00000000794.9, intron 1 of 7) protein_coding-intron (ENSMUSG00000000794.9, intron 1 of 7) 68098 ENSMUSG00000027952.16 ENSMUSG00000027952 ENSMUST00000184515 Pmvk protein_coding Interval_8317 chr1 137231479 137231845 + 0 NA Intergenic Intergenic -16015 ENSMUSG00000077207.1 ENSMUSG00000077207 ENSMUST00000104019 Gm25609 snRNA Interval_153960 chr8 11505794 11507011 + 0 NA intron (ENSMUSG00000031505.11, intron 4 of 6) protein_coding-intron (ENSMUSG00000031505.11, intron 4 of 9) -5984 ENSMUSG00000031505.11 ENSMUSG00000031505 ENSMUST00000210316 Naxd protein_coding Interval_110056 chr3 152841903 152842154 + 0 NA intron (ENSMUSG00000039047.17, intron 12 of 14) protein_coding-intron (ENSMUSG00000039037.5, intron 3 of 4) 34189 ENSMUSG00000090040.1 ENSMUSG00000090040 ENSMUST00000162856 Gm16232 processed_pseudogene Interval_158333 chr8 81721268 81721847 + 0 NA intron (ENSMUSG00000037940.17, intron 3 of 4) protein_coding-intron (ENSMUSG00000037940.17, intron 1 of 22) -54485 ENSMUSG00000090732.1 ENSMUSG00000090732 ENSMUST00000164687 4930579O11Rik processed_transcript Interval_165588 chr9 49950248 49950982 + 0 NA Intergenic Intergenic -4263 ENSMUSG00000111682.1 ENSMUSG00000111682 ENSMUST00000215094 Gm47543 lincRNA Interval_86710 chr19 42866365 42866570 + 0 NA intron (ENSMUSG00000074852.4, intron 9 of 11) protein_coding-intron (ENSMUSG00000074852.4, intron 9 of 11) 87357 ENSMUSG00000090235.1 ENSMUSG00000090235 ENSMUST00000160001 Gm16244 processed_transcript Interval_136037 chr6 50212119 50212591 + 0 NA intron (ENSMUSG00000029821.15, intron 9 of 9) protein_coding-intron (ENSMUSG00000029821.15, intron 10 of 10) 49620 ENSMUSG00000029821.15 ENSMUSG00000029821 ENSMUST00000204700 Gsdme protein_coding Interval_128802 chr5 115351272 115351658 + 0 NA intron (ENSMUSG00000107288.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000107288.1, intron 1 of 1) 2335 ENSMUSG00000107288.1 ENSMUSG00000107288 ENSMUST00000202607 Gm42903 lincRNA Interval_134257 chr6 23923509 23924597 + 0 NA Intergenic Intergenic 46007 ENSMUSG00000043865.3 ENSMUSG00000043865 ENSMUST00000062463 Tas2r118 protein_coding Interval_38882 chr12 83589900 83590263 + 0 NA intron (ENSMUSG00000042628.8, intron 3 of 12) protein_coding-intron (ENSMUSG00000042628.8, intron 2 of 11) 6741 ENSMUSG00000042628.8 ENSMUSG00000042628 ENSMUST00000223380 Zfyve1 protein_coding Interval_156039 chr8 43135876 43136219 + 0 NA intron (ENSMUSG00000031651.5, intron 2 of 3) protein_coding-intron (ENSMUSG00000031651.5, intron 5 of 5) 546 ENSMUSG00000031651.5 ENSMUSG00000031651 ENSMUST00000211541 Triml1 protein_coding Interval_138955 chr6 93800248 93800508 + 0 NA intron (ENSMUSG00000045095.16, intron 2 of 4) protein_coding-intron (ENSMUSG00000045095.16, intron 3 of 21) 6606 ENSMUSG00000088627.1 ENSMUSG00000088627 ENSMUST00000158002 Gm23035 snRNA Interval_166829 chr9 63073637 63075694 + 0 NA Intergenic Intergenic 8308 ENSMUSG00000111144.1 ENSMUSG00000111144 ENSMUST00000214934 Gm48193 lincRNA Interval_106288 chr3 95153787 95155490 + 0 NA Intergenic Intergenic -5856 ENSMUSG00000038777.19 ENSMUSG00000038777 ENSMUST00000126597 Sema6c protein_coding Interval_148153 chr7 79508487 79509214 + 0 NA intron (ENSMUSG00000097023.8, intron 1 of 1) lincRNA-intron (ENSMUSG00000097023.8, intron 1 of 2) -1512 ENSMUSG00000102995.1 ENSMUSG00000102995 ENSMUST00000194667 A330074H02Rik TEC Interval_126610 chr5 90903026 90904273 + 0 NA promoter-TSS (ENSMUSG00000058427.10) protein_coding-promoter-TSS (ENSMUSG00000058427.10) -224 ENSMUSG00000058427.10 ENSMUSG00000058427 ENSMUST00000075433 Cxcl2 protein_coding Interval_114465 chr4 79612005 79612310 + 0 NA Intergenic Intergenic -262194 ENSMUSG00000084248.1 ENSMUSG00000084248 ENSMUST00000118621 Gm11409 processed_pseudogene Interval_18634 chr10 88716211 88718073 + 0 NA Intergenic Intergenic -1048 ENSMUSG00000112467.1 ENSMUSG00000112467 ENSMUST00000219363 Gm48144 processed_pseudogene Interval_108286 chr3 123320153 123320793 + 0 NA intron (ENSMUSG00000039234.11, intron 5 of 19) protein_coding-intron (ENSMUSG00000039234.11, intron 8 of 22) 52983 ENSMUSG00000039234.11 ENSMUSG00000039234 ENSMUST00000196482 Sec24d protein_coding Interval_16832 chr10 68969097 68969550 + 0 NA Intergenic Intergenic 64565 ENSMUSG00000112331.1 ENSMUSG00000112331 ENSMUST00000219854 Gm33035 lincRNA Interval_29718 chr11 86385651 86385954 + 0 NA Intergenic Intergenic -23024 ENSMUSG00000088091.1 ENSMUSG00000088091 ENSMUST00000157466 Gm23667 rRNA Interval_128044 chr5 110468924 110470005 + 0 NA Intergenic Intergenic 12737 ENSMUSG00000105603.1 ENSMUSG00000105603 ENSMUST00000199828 Gm32996 processed_pseudogene Interval_97903 chr2 145460266 145461427 + 0 NA intron (ENSMUSG00000063873.10, intron 2 of 4) protein_coding-intron (ENSMUSG00000063873.10, intron 2 of 15) 20885 ENSMUSG00000088213.1 ENSMUSG00000088213 ENSMUST00000157588 Gm22390 misc_RNA Interval_49196 chr13 109342129 109342532 + 0 NA intron (ENSMUSG00000021699.17, intron 1 of 14) protein_coding-intron (ENSMUSG00000021699.17, intron 1 of 14) 17586 ENSMUSG00000076946.2 ENSMUSG00000076946 ENSMUST00000103758 Mir582 miRNA Interval_75262 chr17 65540645 65541448 + 0 NA promoter-TSS (ENSMUSG00000045036.15) protein_coding-promoter-TSS (ENSMUSG00000045036.15) 19730 ENSMUSG00000117158.1 ENSMUSG00000117158 ENSMUST00000233030 Gm49866 processed_pseudogene Interval_61877 chr15 84853354 84856556 + 0 NA intron (ENSMUSG00000016624.15, intron 1 of 11) protein_coding-intron (ENSMUSG00000016624.15, intron 1 of 12) -11362 ENSMUSG00000097954.1 ENSMUSG00000097954 ENSMUST00000182243 Gm4217 processed_pseudogene Interval_36723 chr12 52526377 52526748 + 0 NA intron (ENSMUSG00000035133.9, intron 2 of 6) protein_coding-intron (ENSMUSG00000035133.9, intron 1 of 5) 22546 ENSMUSG00000035133.9 ENSMUSG00000035133 ENSMUST00000110725 Arhgap5 protein_coding Interval_71346 chr17 22460382 22460729 + 0 NA Intergenic Intergenic 9432 ENSMUSG00000071266.13 ENSMUSG00000071266 ENSMUST00000167740 Zfp946 protein_coding Interval_102120 chr3 18054338 18056098 + 0 NA exon (ENSMUSG00000025128.7, exon 1 of 1) protein_coding-exon (ENSMUSG00000025128.7, exon 1 of 1) 1044 ENSMUSG00000025128.7 ENSMUSG00000025128 ENSMUST00000026120 Bhlhe22 protein_coding Interval_137984 chr6 83935832 83937275 + 0 NA intron (ENSMUSG00000030016.14, intron 3 of 26) protein_coding-intron (ENSMUSG00000030016.14, intron 3 of 27) -11345 ENSMUSG00000030016.14 ENSMUSG00000030016 ENSMUST00000204823 Zfp638 protein_coding Interval_93684 chr2 75813866 75814303 + 0 NA Intergenic Intergenic 5726 ENSMUSG00000081833.1 ENSMUSG00000081833 ENSMUST00000122366 Gm13669 processed_pseudogene Interval_11756 chr1 185229674 185230072 + 0 NA intron (ENSMUSG00000039318.12, intron 2 of 34) protein_coding-intron (ENSMUSG00000039318.12, intron 2 of 34) -13034 ENSMUSG00000077571.1 ENSMUSG00000077571 ENSMUST00000104383 Snora36b snoRNA Interval_60723 chr15 76368570 76369801 + 0 NA promoter-TSS (ENSMUSG00000022554.7) protein_coding-promoter-TSS (ENSMUSG00000022554.7) -297 ENSMUSG00000022554.7 ENSMUSG00000022554 ENSMUST00000230320 Hgh1 protein_coding Interval_70489 chr17 10675109 10676420 + 0 NA intron (ENSMUSG00000037196.6, intron 2 of 4) protein_coding-intron (ENSMUSG00000037196.6, intron 2 of 4) -44697 ENSMUSG00000037196.6 ENSMUSG00000037196 ENSMUST00000160599 Pacrg protein_coding Interval_71501 chr17 24194007 24194360 + 0 NA intron (ENSMUSG00000036473.16, intron 1 of 7) protein_coding-intron (ENSMUSG00000036473.16, intron 1 of 7) 11313 ENSMUSG00000036473.16 ENSMUSG00000036473 ENSMUST00000201716 Tbc1d24 protein_coding Interval_143047 chr6 148909537 148911311 + 0 NA Intergenic Intergenic -9286 ENSMUSG00000095288.1 ENSMUSG00000095288 ENSMUST00000121643 Gm7618 processed_pseudogene Interval_63640 chr15 102493373 102493916 + 0 NA intron (ENSMUSG00000056851.14, intron 8 of 8) protein_coding-intron (ENSMUSG00000056851.14, intron 14 of 14) 7736 ENSMUSG00000099112.1 ENSMUSG00000099112 ENSMUST00000184881 Gm27406 misc_RNA Interval_130035 chr5 123822940 123823375 + 0 NA Intergenic Intergenic 42342 ENSMUSG00000045502.6 ENSMUSG00000045502 ENSMUST00000057145 Hcar2 protein_coding Interval_67937 chr16 59783723 59785019 + 0 NA intron (ENSMUSG00000055540.15, intron 7 of 8) protein_coding-intron (ENSMUSG00000055540.15, intron 13 of 17) 145162 ENSMUSG00000116894.1 ENSMUSG00000116894 ENSMUST00000232302 4930547E14Rik processed_transcript Interval_31301 chr11 99443103 99443313 + 0 NA Intergenic Intergenic -5058 ENSMUSG00000035775.2 ENSMUSG00000035775 ENSMUST00000017743 Krt20 protein_coding Interval_87269 chr19 47319966 47320503 + 0 NA intron (ENSMUSG00000053617.12, intron 7 of 13) protein_coding-intron (ENSMUSG00000053617.12, intron 7 of 14) -46645 ENSMUSG00000098786.1 ENSMUSG00000098786 ENSMUST00000183658 Mir6995 miRNA Interval_96112 chr2 119833429 119835055 + 0 NA Intergenic Intergenic 34915 ENSMUSG00000027298.17 ENSMUSG00000027298 ENSMUST00000137135 Tyro3 protein_coding Interval_99110 chr2 157272156 157272629 + 0 NA intron (ENSMUSG00000074627.11, intron 1 of 3) protein_coding-intron (ENSMUSG00000074627.11, intron 1 of 24) 7157 ENSMUSG00000074627.11 ENSMUSG00000074627 ENSMUST00000150035 Mroh8 protein_coding Interval_141257 chr6 126585262 126585544 + 0 NA Intergenic Intergenic -29234 ENSMUSG00000110390.1 ENSMUSG00000110390 ENSMUST00000210335 Gm45869 lincRNA Interval_117030 chr4 119108491 119109442 + 0 NA promoter-TSS (ENSMUSG00000028645.11) protein_coding-promoter-TSS (ENSMUSG00000028645.11) 97 ENSMUSG00000028645.11 ENSMUSG00000028645 ENSMUST00000174372 Slc2a1 protein_coding Interval_127401 chr5 103730994 103731749 + 0 NA intron (ENSMUSG00000029313.18, intron 2 of 6) protein_coding-intron (ENSMUSG00000029313.18, intron 2 of 6) -23193 ENSMUSG00000029313.18 ENSMUSG00000029313 ENSMUST00000152145 Aff1 protein_coding Interval_57232 chr15 8028102 8029234 + 0 NA intron (ENSMUSG00000039828.7, intron 8 of 17) protein_coding-intron (ENSMUSG00000039828.7, intron 8 of 17) 53340 ENSMUSG00000098281.1 ENSMUSG00000098281 ENSMUST00000184975 Gm27529 miRNA Interval_164512 chr9 37597927 37598123 + 0 NA intron (ENSMUSG00000001942.8, intron 2 of 10) protein_coding-intron (ENSMUSG00000001942.8, intron 2 of 10) 15697 ENSMUSG00000001948.10 ENSMUSG00000001948 ENSMUST00000215336 Spa17 protein_coding Interval_133171 chr5 150302196 150302402 + 0 NA intron (ENSMUSG00000056602.12, intron 1 of 60) protein_coding-intron (ENSMUSG00000056602.12, intron 1 of 60) -2858 ENSMUSG00000106719.1 ENSMUSG00000106719 ENSMUST00000201397 Gm42556 antisense Interval_30881 chr11 97041202 97041986 + 0 NA promoter-TSS (ENSMUSG00000001445.10) protein_coding-promoter-TSS (ENSMUSG00000001445.10) -1 ENSMUSG00000001445.10 ENSMUSG00000001445 ENSMUST00000054252 Mrpl10 protein_coding Interval_103697 chr3 51693322 51694171 + 0 NA promoter-TSS (ENSMUSG00000074603.3) TEC-promoter-TSS (ENSMUSG00000074603.3) 30 ENSMUSG00000074603.3 ENSMUSG00000074603 ENSMUST00000099104 Gm10729 TEC Interval_133053 chr5 149537357 149537786 + 0 NA intron (ENSMUSG00000029658.17, intron 1 of 3) protein_coding-intron (ENSMUSG00000029658.17, intron 2 of 22) 459 ENSMUSG00000107132.1 ENSMUSG00000107132 ENSMUST00000202188 Gm15997 antisense Interval_118953 chr4 134677624 134677972 + 0 NA intron (ENSMUSG00000037306.13, intron 1 of 8) protein_coding-intron (ENSMUSG00000037306.13, intron 2 of 12) 25969 ENSMUSG00000037306.13 ENSMUSG00000037306 ENSMUST00000176606 Man1c1 protein_coding Interval_94223 chr2 85341696 85341938 + 0 NA Intergenic Intergenic -2502 ENSMUSG00000075223.4 ENSMUSG00000075223 ENSMUST00000111598 Olfr987 protein_coding Interval_13242 chr10 13500610 13501888 + 0 NA TTS (ENSMUSG00000019810.15) protein_coding-TTS (ENSMUSG00000019810.15) -4788 ENSMUSG00000019810.15 ENSMUSG00000019810 ENSMUST00000166466 Fuca2 protein_coding Interval_149428 chr7 98437580 98438083 + 0 NA promoter-TSS (ENSMUSG00000108346.1) processed_pseudogene-promoter-TSS (ENSMUSG00000108346.1) -312 ENSMUSG00000108346.1 ENSMUSG00000108346 ENSMUST00000205826 Gm44980 processed_pseudogene Interval_119139 chr4 135803265 135804818 + 0 NA intron (ENSMUSG00000037139.15, intron 5 of 12) protein_coding-intron (ENSMUSG00000037139.15, intron 29 of 36) 5851 ENSMUSG00000037139.15 ENSMUSG00000037139 ENSMUST00000142177 Myom3 protein_coding Interval_92803 chr2 65551593 65553642 + 0 NA intron (ENSMUSG00000057182.15, intron 1 of 15) protein_coding-intron (ENSMUSG00000057182.15, intron 1 of 26) -27959 ENSMUSG00000057182.15 ENSMUSG00000057182 ENSMUST00000126837 Scn3a protein_coding Interval_54806 chr14 75283779 75284980 + 0 NA promoter-TSS (ENSMUSG00000022000.11) protein_coding-promoter-TSS (ENSMUSG00000022000.11) 12030 ENSMUSG00000021999.9 ENSMUSG00000021999 ENSMUST00000227817 Cpb2 protein_coding Interval_42187 chr13 9686367 9687526 + 0 NA TTS (ENSMUSG00000021156.17) protein_coding-TTS (ENSMUSG00000021156.17) 2653 ENSMUSG00000114138.1 ENSMUSG00000114138 ENSMUST00000222421 Gm36423 antisense Interval_24079 chr11 30057355 30058150 + 0 NA Intergenic Intergenic -48642 ENSMUSG00000101872.1 ENSMUSG00000101872 ENSMUST00000186216 Gm29237 antisense Interval_173951 chrX 115120268 115120962 + 0 NA Intergenic Intergenic 131465 ENSMUSG00000083971.3 ENSMUSG00000083971 ENSMUST00000119458 Gm5943 processed_pseudogene Interval_125127 chr5 64726602 64728409 + 0 NA intron (ENSMUSG00000097640.7, intron 1 of 4) processed_transcript-intron (ENSMUSG00000097640.7, intron 1 of 4) -28984 ENSMUSG00000097668.2 ENSMUSG00000097668 ENSMUST00000180650 Gm26761 lincRNA Interval_75797 chr17 71459696 71459998 + 0 NA promoter-TSS (ENSMUSG00000091831.5) protein_coding-promoter-TSS (ENSMUSG00000091831.5) -547 ENSMUSG00000091831.5 ENSMUSG00000091831 ENSMUST00000183937 Gm4707 protein_coding Interval_167684 chr9 71914077 71914404 + 0 NA intron (ENSMUSG00000032228.16, intron 3 of 14) protein_coding-intron (ENSMUSG00000032228.16, intron 8 of 19) 5397 ENSMUSG00000098761.1 ENSMUSG00000098761 ENSMUST00000184135 Gm18821 processed_pseudogene Interval_73235 chr17 35708205 35708456 + 0 NA TTS (ENSMUSG00000086867.1) antisense-TTS (ENSMUSG00000086867.1) 4434 ENSMUSG00000086867.1 ENSMUSG00000086867 ENSMUST00000135203 Gm4577 antisense Interval_79612 chr18 34005958 34007700 + 0 NA promoter-TSS (ENSMUSG00000024376.7) protein_coding-promoter-TSS (ENSMUSG00000024376.7) 137 ENSMUSG00000024376.7 ENSMUSG00000024376 ENSMUST00000237971 Epb41l4a protein_coding Interval_130964 chr5 134292550 134293526 + 0 NA intron (ENSMUSG00000060261.15, intron 3 of 4) protein_coding-intron (ENSMUSG00000060261.15, intron 3 of 34) 4136 ENSMUSG00000060261.15 ENSMUSG00000060261 ENSMUST00000202343 Gtf2i protein_coding Interval_46259 chr13 63089499 63090253 + 0 NA intron (ENSMUSG00000021458.17, intron 1 of 7) protein_coding-intron (ENSMUSG00000021458.17, intron 4 of 15) -44175 ENSMUSG00000113257.1 ENSMUSG00000113257 ENSMUST00000223302 Gm30409 sense_intronic Interval_74404 chr17 49964780 49965279 + 0 NA Intergenic Intergenic -7798 ENSMUSG00000118535.1 ENSMUSG00000118535 ENSMUST00000239097 AC133946.1 unitary_pseudogene Interval_19749 chr10 108454654 108455441 + 0 NA Intergenic Intergenic 8445 ENSMUSG00000112532.1 ENSMUSG00000112532 ENSMUST00000220211 Gm36283 lincRNA Interval_162952 chr9 13695148 13695610 + 0 NA intron (ENSMUSG00000031925.17, intron 1 of 3) protein_coding-intron (ENSMUSG00000031925.17, intron 1 of 3) 32063 ENSMUSG00000111698.1 ENSMUSG00000111698 ENSMUST00000215676 Gm47105 processed_pseudogene Interval_94991 chr2 102657954 102659847 + 0 NA promoter-TSS (ENSMUSG00000005089.15) protein_coding-promoter-TSS (ENSMUSG00000005089.15) 87860 ENSMUSG00000087185.1 ENSMUSG00000087185 ENSMUST00000147082 Gm13872 antisense Interval_5918 chr1 93217454 93217984 + 0 NA intron (ENSMUSG00000084989.3, intron 27 of 31) protein_coding-intron (ENSMUSG00000084989.3, intron 27 of 31) -18132 ENSMUSG00000047793.13 ENSMUSG00000047793 ENSMUST00000165883 Sned1 protein_coding Interval_169460 chr9 97632996 97633538 + 0 NA intron (ENSMUSG00000032452.12, intron 2 of 16) protein_coding-intron (ENSMUSG00000032452.12, intron 2 of 17) -193640 ENSMUSG00000077208.1 ENSMUSG00000077208 ENSMUST00000104020 Gm25607 snoRNA Interval_128983 chr5 116444231 116444909 + 0 NA exon (ENSMUSG00000063919.11, exon 13 of 13) protein_coding-exon (ENSMUSG00000063919.11, exon 13 of 13) 5850 ENSMUSG00000086219.7 ENSMUSG00000086219 ENSMUST00000126959 Srrm4os antisense Interval_160783 chr8 112224889 112225160 + 0 NA Intergenic Intergenic 11942 ENSMUSG00000110435.1 ENSMUSG00000110435 ENSMUST00000212314 Gm3635 processed_pseudogene Interval_147297 chr7 65635488 65636512 + 0 NA promoter-TSS (ENSMUSG00000086232.2) transcribed_unprocessed_pseudogene-promoter-TSS (ENSMUSG00000086232.2) -214 ENSMUSG00000086232.2 ENSMUSG00000086232 ENSMUST00000211354 Gm7546 transcribed_unprocessed_pseudogene Interval_150240 chr7 108909178 108910333 + 0 NA Intergenic Intergenic -15350 ENSMUSG00000066239.2 ENSMUSG00000066239 ENSMUST00000084752 Olfr519 protein_coding Interval_6094 chr1 96768280 96768527 + 0 NA Intergenic Intergenic 6372 ENSMUSG00000077255.1 ENSMUSG00000077255 ENSMUST00000104067 Gm26078 snoRNA Interval_38392 chr12 78582682 78583321 + 0 NA intron (ENSMUSG00000047454.12, intron 10 of 22) protein_coding-intron (ENSMUSG00000047454.12, intron 11 of 23) -99646 ENSMUSG00000047454.12 ENSMUSG00000047454 ENSMUST00000219629 Gphn protein_coding Interval_52691 chr14 48651778 48652651 + 0 NA promoter-TSS (ENSMUSG00000087756.1) snRNA-promoter-TSS (ENSMUSG00000087756.1) -285 ENSMUSG00000087756.1 ENSMUSG00000087756 ENSMUST00000157131 Gm23469 snRNA Interval_73114 chr17 34896390 34896573 + 0 NA promoter-TSS (ENSMUSG00000024371.14) protein_coding-promoter-TSS (ENSMUSG00000024371.14) -924 ENSMUSG00000024371.14 ENSMUSG00000024371 ENSMUST00000174279 C2 protein_coding Interval_84408 chr19 10688263 10689399 + 0 NA promoter-TSS (ENSMUSG00000048832.9) protein_coding-promoter-TSS (ENSMUSG00000048832.9) 68 ENSMUSG00000048832.9 ENSMUSG00000048832 ENSMUST00000235921 Vps37c protein_coding Interval_65753 chr16 27172846 27173256 + 0 NA Intergenic Intergenic -134438 ENSMUSG00000052276.8 ENSMUSG00000052276 ENSMUST00000066852 Ostn protein_coding Interval_68856 chr16 87617057 87618202 + 0 NA Intergenic Intergenic 3491 ENSMUSG00000064670.1 ENSMUSG00000064670 ENSMUST00000082736 Gm22808 snRNA Interval_166748 chr9 62399893 62401118 + 0 NA Intergenic Intergenic 48643 ENSMUSG00000041729.15 ENSMUSG00000041729 ENSMUST00000123379 Coro2b protein_coding Interval_161437 chr8 120457624 120457874 + 0 NA intron (ENSMUSG00000031822.20, intron 2 of 2) protein_coding-intron (ENSMUSG00000092329.1, intron 1 of 15) -14200 ENSMUSG00000080549.2 ENSMUSG00000080549 ENSMUST00000116899 Gm22715 miRNA Interval_11990 chr1 188580893 188581952 + 0 NA intron (ENSMUSG00000026609.15, intron 7 of 12) protein_coding-intron (ENSMUSG00000026609.15, intron 31 of 70) 41631 ENSMUSG00000077235.1 ENSMUSG00000077235 ENSMUST00000104047 Gm25095 snoRNA Interval_146715 chr7 49650454 49650902 + 0 NA Intergenic Intergenic -13829 ENSMUSG00000030507.6 ENSMUSG00000030507 ENSMUST00000032717 Dbx1 protein_coding Interval_160066 chr8 106140861 106141510 + 0 NA Intergenic Intergenic 4120 ENSMUSG00000086390.7 ENSMUSG00000086390 ENSMUST00000145343 1810019D21Rik processed_transcript Interval_174757 chrX 165616476 165617682 + 0 NA Intergenic Intergenic -63125 ENSMUSG00000082134.1 ENSMUSG00000082134 ENSMUST00000117309 Gm15236 processed_pseudogene Interval_103596 chr3 51041898 51042650 + 0 NA Intergenic Intergenic 32582 ENSMUSG00000102067.1 ENSMUSG00000102067 ENSMUST00000189687 Gm29230 lincRNA Interval_5990 chr1 93745806 93748021 + 0 NA intron (ENSMUSG00000101952.1, intron 1 of 2) protein_coding-intron (ENSMUSG00000026279.14, intron 2 of 5) 7867 ENSMUSG00000026279.14 ENSMUSG00000026279 ENSMUST00000189173 Thap4 protein_coding Interval_33805 chr11 118648507 118648951 + 0 NA intron (ENSMUSG00000025576.17, intron 3 of 14) protein_coding-intron (ENSMUSG00000025576.17, intron 3 of 14) -141376 ENSMUSG00000025576.17 ENSMUSG00000025576 ENSMUST00000134774 Rbfox3 protein_coding Interval_64714 chr16 14410789 14411181 + 0 NA intron (ENSMUSG00000023088.17, intron 2 of 4) protein_coding-intron (ENSMUSG00000023088.17, intron 8 of 30) 28178 ENSMUSG00000089106.1 ENSMUSG00000089106 ENSMUST00000158481 Gm23116 snRNA Interval_114198 chr4 66900007 66900614 + 0 NA intron (ENSMUSG00000039005.13, intron 2 of 3) protein_coding-intron (ENSMUSG00000039005.13, intron 2 of 3) 72108 ENSMUSG00000039005.13 ENSMUSG00000039005 ENSMUST00000147008 Tlr4 protein_coding Interval_159371 chr8 94120343 94122262 + 0 NA Intergenic Intergenic -15895 ENSMUSG00000031757.7 ENSMUSG00000031757 ENSMUST00000034207 Mt4 protein_coding Interval_96716 chr2 127394514 127394706 + 0 NA Intergenic Intergenic -30589 ENSMUSG00000046338.4 ENSMUSG00000046338 ENSMUST00000062211 Gpat2 protein_coding Interval_24598 chr11 35065814 35066032 + 0 NA Intergenic Intergenic -105706 ENSMUSG00000056427.10 ENSMUSG00000056427 ENSMUST00000124438 Slit3 protein_coding Interval_30897 chr11 97126993 97128226 + 0 NA Intergenic Intergenic -10694 ENSMUSG00000084368.1 ENSMUSG00000084368 ENSMUST00000119164 Gm11572 processed_pseudogene Interval_34823 chr12 12292438 12293326 + 0 NA intron (ENSMUSG00000020589.17, intron 2 of 3) protein_coding-intron (ENSMUSG00000020589.17, intron 1 of 11) 30699 ENSMUSG00000020589.17 ENSMUSG00000020589 ENSMUST00000222357 Fam49a protein_coding Interval_23454 chr11 22710416 22711284 + 0 NA Intergenic Intergenic 22136 ENSMUSG00000085979.1 ENSMUSG00000085979 ENSMUST00000143643 Gm12055 lincRNA Interval_157122 chr8 65590434 65591557 + 0 NA Intergenic Intergenic 76706 ENSMUSG00000064763.1 ENSMUSG00000064763 ENSMUST00000082829 Gm23515 snRNA Interval_100508 chr2 169738780 169739367 + 0 NA intron (ENSMUSG00000047907.11, intron 1 of 2) protein_coding-intron (ENSMUSG00000047907.11, intron 1 of 1) -110755 ENSMUSG00000103662.1 ENSMUSG00000103662 ENSMUST00000191912 Gm34294 TEC Interval_105148 chr3 82692106 82692383 + 0 NA Intergenic Intergenic -19677 ENSMUSG00000104772.1 ENSMUSG00000104772 ENSMUST00000200226 Gm43347 processed_pseudogene Interval_169607 chr9 99419916 99421103 + 0 NA promoter-TSS (ENSMUSG00000032470.17) protein_coding-promoter-TSS (ENSMUSG00000032470.17) -25814 ENSMUSG00000032470.17 ENSMUSG00000032470 ENSMUST00000123771 Mras protein_coding Interval_79393 chr18 31618594 31618792 + 0 NA Intergenic Intergenic -8782 ENSMUSG00000024259.9 ENSMUSG00000024259 ENSMUST00000060396 Slc25a46 protein_coding Interval_135730 chr6 45485613 45486385 + 0 NA intron (ENSMUSG00000039419.17, intron 2 of 3) protein_coding-intron (ENSMUSG00000039419.17, intron 1 of 23) -43084 ENSMUSG00000108055.1 ENSMUSG00000108055 ENSMUST00000203831 Gm43876 TEC Interval_121534 chr5 3292456 3294505 + 0 NA Intergenic Intergenic 23161 ENSMUSG00000106658.1 ENSMUSG00000106658 ENSMUST00000197473 Gm36548 lincRNA Interval_84959 chr19 20345108 20345962 + 0 NA intron (ENSMUSG00000094732.2, intron 2 of 7) lincRNA-intron (ENSMUSG00000094732.2, intron 1 of 7) 45138 ENSMUSG00000024659.15 ENSMUSG00000024659 ENSMUST00000164587 Anxa1 protein_coding Interval_68993 chr16 89996480 89997124 + 0 NA intron (ENSMUSG00000002489.16, intron 2 of 11) protein_coding-intron (ENSMUSG00000002489.16, intron 2 of 11) -93181 ENSMUSG00000116536.1 ENSMUSG00000116536 ENSMUST00000232386 Gm2805 processed_pseudogene Interval_34587 chr12 5880728 5881018 + 0 NA intron (ENSMUSG00000112404.1, intron 1 of 4) lincRNA-intron (ENSMUSG00000112404.1, intron 1 of 2) 37161 ENSMUSG00000088209.1 ENSMUSG00000088209 ENSMUST00000157584 Gm23752 rRNA Interval_62021 chr15 85935595 85936252 + 0 NA intron (ENSMUSG00000016028.11, intron 8 of 33) protein_coding-intron (ENSMUSG00000016028.11, intron 9 of 34) -33724 ENSMUSG00000016028.11 ENSMUSG00000016028 ENSMUST00000227450 Celsr1 protein_coding Interval_101244 chr2 179799454 179800493 + 0 NA intron (ENSMUSG00000000305.12, intron 4 of 5) protein_coding-intron (ENSMUSG00000000305.12, intron 4 of 15) 22810 ENSMUSG00000000305.12 ENSMUSG00000000305 ENSMUST00000098996 Cdh4 protein_coding Interval_155193 chr8 27353226 27353543 + 0 NA Intergenic Intergenic 8990 ENSMUSG00000071138.4 ENSMUSG00000071138 ENSMUST00000095375 Tex24 protein_coding Interval_11075 chr1 179196622 179199411 + 0 NA intron (ENSMUSG00000055067.15, intron 5 of 11) protein_coding-intron (ENSMUSG00000055067.15, intron 2 of 8) -280402 ENSMUSG00000089713.1 ENSMUSG00000089713 ENSMUST00000162545 Gm16564 antisense Interval_14933 chr10 41259573 41259906 + 0 NA intron (ENSMUSG00000038417.4, intron 10 of 22) protein_coding-intron (ENSMUSG00000038417.4, intron 10 of 22) 43521 ENSMUSG00000038417.4 ENSMUSG00000038417 ENSMUST00000043814 Fig4 protein_coding Interval_135667 chr6 42790377 42790779 + 0 NA exon (ENSMUSG00000094192.5, exon 1 of 1) protein_coding-exon (ENSMUSG00000094192.5, exon 1 of 1) 5485 ENSMUSG00000094192.5 ENSMUSG00000094192 ENSMUST00000075468 Olfr452 protein_coding Interval_106635 chr3 97956331 97956730 + 0 NA intron (ENSMUSG00000074388.3, intron 1 of 1) lincRNA-intron (ENSMUSG00000074388.3, intron 1 of 1) 26357 ENSMUSG00000074388.3 ENSMUSG00000074388 ENSMUST00000098828 Gm5544 lincRNA Interval_56762 chr14 121909862 121910170 + 0 NA intron (ENSMUSG00000041765.6, intron 3 of 5) protein_coding-intron (ENSMUSG00000041765.6, intron 4 of 8) 5765 ENSMUSG00000050350.8 ENSMUSG00000050350 ENSMUST00000055475 Gpr18 protein_coding Interval_144264 chr7 24117558 24118462 + 0 NA promoter-TSS (ENSMUSG00000052675.11) protein_coding-promoter-TSS (ENSMUSG00000052675.11) -359 ENSMUSG00000052675.11 ENSMUSG00000052675 ENSMUST00000215113 Zfp112 protein_coding Interval_165407 chr9 47562158 47562375 + 0 NA intron (ENSMUSG00000032076.20, intron 1 of 8) protein_coding-intron (ENSMUSG00000032076.20, intron 1 of 8) 31914 ENSMUSG00000032076.20 ENSMUSG00000032076 ENSMUST00000034581 Cadm1 protein_coding Interval_887 chr1 13008807 13010010 + 0 NA Intergenic Intergenic -18231 ENSMUSG00000025938.16 ENSMUSG00000025938 ENSMUST00000191566 Slco5a1 protein_coding Interval_17717 chr10 79726084 79726651 + 0 NA intron (ENSMUSG00000020331.9, intron 3 of 7) protein_coding-intron (ENSMUSG00000020331.9, intron 3 of 8) 9733 ENSMUSG00000020331.9 ENSMUSG00000020331 ENSMUST00000020581 Hcn2 protein_coding Interval_127073 chr5 100079059 100080080 + 0 NA exon (ENSMUSG00000050640.16, exon 8 of 8) protein_coding-exon (ENSMUSG00000050640.16, exon 8 of 8) -12328 ENSMUSG00000086259.7 ENSMUSG00000086259 ENSMUST00000154539 Tmem150cos antisense Interval_82821 chr18 77209677 77210551 + 0 NA intron (ENSMUSG00000025425.18, intron 1 of 6) protein_coding-intron (ENSMUSG00000025425.18, intron 1 of 7) 9213 ENSMUSG00000082784.1 ENSMUSG00000082784 ENSMUST00000118893 Gm15957 processed_pseudogene Interval_139103 chr6 95156072 95156726 + 0 NA Intergenic Intergenic 38415 ENSMUSG00000030031.14 ENSMUSG00000030031 ENSMUST00000145387 Kbtbd8 protein_coding Interval_154995 chr8 25555485 25556307 + 0 NA TTS (ENSMUSG00000031565.18) protein_coding-TTS (ENSMUSG00000031565.18) -2336 ENSMUSG00000086134.1 ENSMUSG00000086134 ENSMUST00000140451 Gm16159 antisense Interval_50225 chr14 10556895 10557112 + 0 NA intron (ENSMUSG00000060579.13, intron 3 of 4) protein_coding-intron (ENSMUSG00000060579.13, intron 4 of 9) 78329 ENSMUSG00000065328.1 ENSMUSG00000065328 ENSMUST00000083394 Gm22053 snoRNA Interval_97248 chr2 132617167 132618232 + 0 NA intron (ENSMUSG00000074783.10, intron 3 of 5) lincRNA-intron (ENSMUSG00000074783.10, intron 2 of 3) 19504 ENSMUSG00000074783.10 ENSMUSG00000074783 ENSMUST00000138751 AU019990 lincRNA Interval_87708 chr19 55253122 55254851 + 0 NA exon (ENSMUSG00000024981.6, exon 1 of 22) protein_coding-exon (ENSMUSG00000024981.6, exon 1 of 22) -12750 ENSMUSG00000055523.7 ENSMUSG00000055523 ENSMUST00000069183 Gucy2g protein_coding Interval_111815 chr4 31062544 31062745 + 0 NA Intergenic Intergenic 112368 ENSMUSG00000065053.1 ENSMUSG00000065053 ENSMUST00000083119 Gm25705 snRNA Interval_78601 chr18 15065873 15066173 + 0 NA intron (ENSMUSG00000036225.15, intron 1 of 4) protein_coding-intron (ENSMUSG00000036225.15, intron 1 of 4) -1925 ENSMUSG00000036225.15 ENSMUSG00000036225 ENSMUST00000234685 Kctd1 protein_coding Interval_104769 chr3 72517560 72518597 + 0 NA Intergenic Intergenic 86270 ENSMUSG00000103078.1 ENSMUSG00000103078 ENSMUST00000195107 Gm37901 processed_pseudogene Interval_31025 chr11 97775302 97777799 + 0 NA promoter-TSS (ENSMUSG00000018543.8) protein_coding-promoter-TSS (ENSMUSG00000018543.8) -632 ENSMUSG00000018543.8 ENSMUSG00000018543 ENSMUST00000107576 1700001P01Rik protein_coding Interval_101929 chr3 11875956 11876262 + 0 NA Intergenic Intergenic -31750 ENSMUSG00000104015.1 ENSMUSG00000104015 ENSMUST00000192022 Gm10745 lincRNA Interval_11282 chr1 180686323 180686571 + 0 NA intron (ENSMUSG00000058729.13, intron 1 of 3) protein_coding-intron (ENSMUSG00000058729.13, intron 12 of 14) 5560 ENSMUSG00000058729.13 ENSMUSG00000058729 ENSMUST00000194847 Lin9 protein_coding Interval_155447 chr8 33641402 33642691 + 0 NA promoter-TSS (ENSMUSG00000052906.7) protein_coding-promoter-TSS (ENSMUSG00000052906.7) -5792 ENSMUSG00000052906.7 ENSMUSG00000052906 ENSMUST00000210807 Ubxn8 protein_coding Interval_48201 chr13 97145488 97146462 + 0 NA intron (ENSMUSG00000021666.16, intron 4 of 4) protein_coding-intron (ENSMUSG00000021666.16, intron 4 of 20) 7967 ENSMUSG00000021666.16 ENSMUSG00000021666 ENSMUST00000159321 Gfm2 protein_coding Interval_78157 chr18 9478474 9479406 + 0 NA Intergenic Intergenic -16681 ENSMUSG00000117503.1 ENSMUSG00000117503 ENSMUST00000234250 Gm7527 processed_pseudogene Interval_101080 chr2 177202814 177203052 + 0 NA promoter-TSS (ENSMUSG00000078870.9) protein_coding-promoter-TSS (ENSMUSG00000078870.9) -7172 ENSMUSG00000078870.9 ENSMUSG00000078870 ENSMUST00000108964 Gm14410 protein_coding Interval_25430 chr11 48305444 48305899 + 0 NA Intergenic Intergenic -15358 ENSMUSG00000081952.1 ENSMUSG00000081952 ENSMUST00000120545 Gm12178 processed_pseudogene Interval_46266 chr13 63216704 63216996 + 0 NA intron (ENSMUSG00000021458.17, intron 3 of 5) protein_coding-intron (ENSMUSG00000021458.17, intron 10 of 15) 5900 ENSMUSG00000113853.1 ENSMUSG00000113853 ENSMUST00000221858 Gm47583 TEC Interval_31982 chr11 104300853 104301169 + 0 NA intron (ENSMUSG00000018411.17, intron 5 of 12) protein_coding-intron (ENSMUSG00000018411.17, intron 5 of 11) -41650 ENSMUSG00000085134.1 ENSMUSG00000085134 ENSMUST00000137561 Gm11659 antisense Interval_85769 chr19 30663683 30664494 + 0 NA intron (ENSMUSG00000052920.16, intron 3 of 10) protein_coding-intron (ENSMUSG00000052920.16, intron 9 of 17) -39993 ENSMUSG00000084432.1 ENSMUSG00000084432 ENSMUST00000122483 Gm23426 misc_RNA Interval_120700 chr4 150173410 150174241 + 0 NA Intergenic Intergenic 15997 ENSMUSG00000062064.6 ENSMUSG00000062064 ENSMUST00000133379 Slc2a7 protein_coding Interval_162485 chr9 3116039 3116941 + 0 NA Intergenic Intergenic 22249 ENSMUSG00000110425.1 ENSMUSG00000110425 ENSMUST00000212713 Gm32390 processed_pseudogene Interval_22317 chr11 8719021 8720270 + 0 NA Intergenic Intergenic -54964 ENSMUSG00000020422.14 ENSMUSG00000020422 ENSMUST00000134823 Tns3 protein_coding Interval_164522 chr9 37690135 37690849 + 0 NA Intergenic Intergenic 4551 ENSMUSG00000097946.1 ENSMUSG00000097946 ENSMUST00000182705 Gm8343 processed_pseudogene Interval_42076 chr13 8064320 8064984 + 0 NA Intergenic Intergenic -33299 ENSMUSG00000113508.1 ENSMUSG00000113508 ENSMUST00000222219 Gm9742 transcribed_processed_pseudogene Interval_46463 chr13 66364719 66365716 + 0 NA intron (ENSMUSG00000094499.3, intron 4 of 9) lincRNA-intron (ENSMUSG00000114616.1, intron 2 of 2) -22282 ENSMUSG00000114729.1 ENSMUSG00000114729 ENSMUST00000224620 C330022B21Rik processed_pseudogene Interval_37866 chr12 72687301 72689310 + 0 NA Intergenic Intergenic -23551 ENSMUSG00000021094.10 ENSMUSG00000021094 ENSMUST00000221674 Dhrs7 protein_coding Interval_88279 chr2 3254047 3254306 + 0 NA Intergenic Intergenic -30105 ENSMUSG00000026643.16 ENSMUSG00000026643 ENSMUST00000155761 Nmt2 protein_coding Interval_123114 chr5 29781076 29782543 + 0 NA TTS (ENSMUSG00000029131.14) protein_coding-TTS (ENSMUSG00000029131.14) 13228 ENSMUSG00000106558.1 ENSMUSG00000106558 ENSMUST00000197149 Gm5552 processed_pseudogene Interval_139392 chr6 99774361 99775110 + 0 NA Intergenic Intergenic 4078 ENSMUSG00000108082.1 ENSMUSG00000108082 ENSMUST00000204852 Gm5314 processed_pseudogene Interval_21123 chr10 126700707 126701642 + 0 NA Intergenic Intergenic 9217 ENSMUSG00000098756.1 ENSMUSG00000098756 ENSMUST00000184232 Mir378d miRNA Interval_3878 chr1 64207093 64207521 + 0 NA intron (ENSMUSG00000101895.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000101895.1, intron 1 of 1) 57106 ENSMUSG00000086721.2 ENSMUSG00000086721 ENSMUST00000117621 Gm13750 processed_pseudogene Interval_155971 chr8 41336244 41336618 + 0 NA Intergenic Intergenic 38342 ENSMUSG00000031591.14 ENSMUSG00000031591 ENSMUST00000143057 Asah1 protein_coding Interval_47185 chr13 77372484 77373348 + 0 NA intron (ENSMUSG00000071252.6, intron 19 of 19) protein_coding-intron (ENSMUSG00000071252.6, intron 19 of 19) 181457 ENSMUSG00000114778.1 ENSMUSG00000114778 ENSMUST00000223622 Gm9634 processed_pseudogene Interval_120812 chr4 150778634 150779119 + 0 NA Intergenic Intergenic -46857 ENSMUSG00000085097.1 ENSMUSG00000085097 ENSMUST00000133196 Gm13049 lincRNA Interval_110984 chr4 11026011 11026643 + 0 NA Intergenic Intergenic -18400 ENSMUSG00000049969.3 ENSMUSG00000049969 ENSMUST00000137891 Plekhf2 protein_coding Interval_88097 chr19 59084233 59084500 + 0 NA Intergenic Intergenic -3205 ENSMUSG00000118377.1 ENSMUSG00000118377 ENSMUST00000237392 Gm9276 processed_pseudogene Interval_120757 chr4 150481587 150481839 + 0 NA intron (ENSMUSG00000039852.17, intron 7 of 22) protein_coding-intron (ENSMUSG00000039852.17, intron 7 of 22) 86831 ENSMUSG00000085213.1 ENSMUSG00000085213 ENSMUST00000128800 Gm13091 antisense Interval_172873 chrX 52632112 52633933 + 0 NA Intergenic Intergenic -19072 ENSMUSG00000055653.13 ENSMUSG00000055653 ENSMUST00000114857 Gpc3 protein_coding Interval_103909 chr3 54807069 54809419 + 0 NA promoter-TSS (ENSMUSG00000036615.7) protein_coding-promoter-TSS (ENSMUSG00000036615.7) -2478 ENSMUSG00000036615.7 ENSMUSG00000036615 ENSMUST00000182084 Rfxap protein_coding Interval_33244 chr11 115447656 115448659 + 0 NA promoter-TSS (ENSMUSG00000093096.1) miRNA-promoter-TSS (ENSMUSG00000093096.1) -97 ENSMUSG00000093096.1 ENSMUSG00000093096 ENSMUST00000175355 Mir3968 miRNA Interval_97702 chr2 142941123 142941372 + 0 NA Intergenic Intergenic 38282 ENSMUSG00000086504.1 ENSMUSG00000086504 ENSMUST00000124774 Kif16bos antisense Interval_160543 chr8 110519105 110520371 + 0 NA intron (ENSMUSG00000059854.8, intron 42 of 86) protein_coding-intron (ENSMUSG00000059854.8, intron 42 of 86) 20753 ENSMUSG00000105131.1 ENSMUSG00000105131 ENSMUST00000197243 Gm47306 miRNA Interval_11833 chr1 186059776 186059973 + 0 NA Intergenic Intergenic 52499 ENSMUSG00000103056.1 ENSMUSG00000103056 ENSMUST00000195813 Gm38268 TEC Interval_162877 chr9 11140081 11141247 + 0 NA Intergenic Intergenic -7936 ENSMUSG00000111691.1 ENSMUSG00000111691 ENSMUST00000213828 Gm47002 lincRNA Interval_119801 chr4 140069421 140070400 + 0 NA intron (ENSMUSG00000040972.8, intron 3 of 9) protein_coding-intron (ENSMUSG00000040972.8, intron 3 of 9) -61967 ENSMUSG00000085968.1 ENSMUSG00000085968 ENSMUST00000135858 Gm13027 antisense Interval_33623 chr11 117585129 117587005 + 0 NA Intergenic Intergenic -25180 ENSMUSG00000054418.6 ENSMUSG00000054418 ENSMUST00000155384 2900041M22Rik processed_transcript Interval_42934 chr13 21486589 21487288 + 0 NA promoter-TSS (ENSMUSG00000088563.1) snRNA-promoter-TSS (ENSMUSG00000088563.1) -537 ENSMUSG00000088563.1 ENSMUSG00000088563 ENSMUST00000157938 Gm23779 snRNA Interval_32941 chr11 113268452 113268888 + 0 NA intron (ENSMUSG00000041654.15, intron 7 of 9) protein_coding-intron (ENSMUSG00000041654.15, intron 8 of 10) -59001 ENSMUSG00000085421.1 ENSMUSG00000085421 ENSMUST00000130373 4732490B19Rik lincRNA Interval_162913 chr9 12930579 12930931 + 0 NA Intergenic Intergenic 65322 ENSMUSG00000098228.1 ENSMUSG00000098228 ENSMUST00000182425 Gm21070 processed_pseudogene Interval_129149 chr5 117841793 117842855 + 0 NA intron (ENSMUSG00000029361.18, intron 1 of 28) protein_coding-intron (ENSMUSG00000029361.18, intron 1 of 28) -24795 ENSMUSG00000029361.18 ENSMUSG00000029361 ENSMUST00000138554 Nos1 protein_coding Interval_104005 chr3 57136202 57137473 + 0 NA promoter-TSS (ENSMUSG00000097366.1) processed_pseudogene-promoter-TSS (ENSMUSG00000097366.1) -6 ENSMUSG00000097366.1 ENSMUSG00000097366 ENSMUST00000181591 Gm8177 processed_pseudogene Interval_40722 chr12 107934309 107935278 + 0 NA intron (ENSMUSG00000048251.15, intron 1 of 1) protein_coding-intron (ENSMUSG00000048251.15, intron 3 of 3) 68621 ENSMUSG00000048251.15 ENSMUSG00000048251 ENSMUST00000109891 Bcl11b protein_coding Interval_20130 chr10 115169647 115170145 + 0 NA intron (ENSMUSG00000006764.8, intron 5 of 10) protein_coding-intron (ENSMUSG00000006764.8, intron 5 of 10) 5662 ENSMUSG00000006764.8 ENSMUSG00000006764 ENSMUST00000155794 Tph2 protein_coding Interval_151464 chr7 122800824 122801140 + 0 NA Intergenic Intergenic -36981 ENSMUSG00000108529.1 ENSMUSG00000108529 ENSMUST00000205860 Gm29759 processed_pseudogene Interval_143652 chr7 13936518 13937396 + 0 NA intron (ENSMUSG00000074377.12, intron 3 of 5) protein_coding-intron (ENSMUSG00000074377.12, intron 3 of 5) 29258 ENSMUSG00000099596.1 ENSMUSG00000099596 ENSMUST00000187149 Zbed4-ps3 processed_pseudogene Interval_136659 chr6 57258652 57258873 + 0 NA exon (ENSMUSG00000115199.1, exon 1 of 1) protein_coding-exon (ENSMUSG00000115199.1, exon 1 of 1) 810 ENSMUSG00000115199.1 ENSMUSG00000115199 ENSMUST00000228297 Vmn1r15 protein_coding Interval_136608 chr6 56608259 56608914 + 0 NA intron (ENSMUSG00000004347.17, intron 1 of 19) protein_coding-intron (ENSMUSG00000004347.17, intron 1 of 19) -7637 ENSMUSG00000077682.1 ENSMUSG00000077682 ENSMUST00000104494 Gm22493 snoRNA Interval_171593 chr9 119427237 119428118 + 0 NA intron (ENSMUSG00000061393.14, intron 2 of 10) protein_coding-intron (ENSMUSG00000061393.14, intron 2 of 9) -2669 ENSMUSG00000061393.14 ENSMUSG00000061393 ENSMUST00000213431 Acvr2b protein_coding Interval_87515 chr19 53178760 53179170 + 0 NA intron (ENSMUSG00000025026.15, intron 2 of 2) protein_coding-intron (ENSMUSG00000025026.15, intron 1 of 15) -19102 ENSMUSG00000088855.1 ENSMUSG00000088855 ENSMUST00000158230 Gm24724 snRNA Interval_75849 chr17 71807120 71807464 + 0 NA TTS (ENSMUSG00000024059.10) protein_coding-TTS (ENSMUSG00000024059.10) -21215 ENSMUSG00000024059.10 ENSMUSG00000024059 ENSMUST00000230290 Clip4 protein_coding Interval_143173 chr7 4148717 4151174 + 0 NA exon (ENSMUSG00000043432.7, exon 1 of 1) protein_coding-exon (ENSMUSG00000043432.7, exon 1 of 1) 429 ENSMUSG00000043432.7 ENSMUSG00000043432 ENSMUST00000058358 Leng9 protein_coding Interval_73142 chr17 35058800 35060145 + 0 NA promoter-TSS (ENSMUSG00000007039.12) protein_coding-promoter-TSS (ENSMUSG00000007039.12) 371 ENSMUSG00000007039.12 ENSMUSG00000007039 ENSMUST00000173562 Ddah2 protein_coding Interval_158035 chr8 78197175 78198063 + 0 NA TTS (ENSMUSG00000110328.1) processed_pseudogene-TTS (ENSMUSG00000110328.1) 230 ENSMUSG00000110328.1 ENSMUSG00000110328 ENSMUST00000210921 Gm45574 processed_pseudogene Interval_105681 chr3 88544655 88545623 + 0 NA exon (ENSMUSG00000008601.12, exon 2 of 5) protein_coding-exon (ENSMUSG00000008601.12, exon 2 of 5) 3143 ENSMUSG00000008601.12 ENSMUSG00000008601 ENSMUST00000149724 Rab25 protein_coding Interval_134534 chr6 29387762 29389209 + 0 NA promoter-TSS (ENSMUSG00000058831.13) protein_coding-promoter-TSS (ENSMUSG00000058831.13) -17 ENSMUSG00000058831.13 ENSMUSG00000058831 ENSMUST00000173653 Opn1sw protein_coding Interval_71986 chr17 27441818 27443834 + 0 NA intron (ENSMUSG00000063239.17, intron 4 of 8) protein_coding-intron (ENSMUSG00000063239.17, intron 6 of 10) 5297 ENSMUSG00000116682.1 ENSMUSG00000116682 ENSMUST00000231804 Gm49789 TEC Interval_139119 chr6 95499707 95499904 + 0 NA intron (ENSMUSG00000061838.7, intron 9 of 10) protein_coding-intron (ENSMUSG00000061838.7, intron 9 of 10) 157663 ENSMUSG00000061838.7 ENSMUSG00000061838 ENSMUST00000203109 Suclg2 protein_coding Interval_134594 chr6 29821820 29823731 + 0 NA intron (ENSMUSG00000029772.17, intron 3 of 4) protein_coding-intron (ENSMUSG00000029772.17, intron 1 of 16) -53904 ENSMUSG00000029772.17 ENSMUSG00000029772 ENSMUST00000128837 Ahcyl2 protein_coding Interval_13731 chr10 21529063 21529548 + 0 NA Intergenic Intergenic -83669 ENSMUSG00000112738.1 ENSMUSG00000112738 ENSMUST00000219604 Gm48386 processed_pseudogene Interval_35168 chr12 17736829 17737157 + 0 NA intron (ENSMUSG00000071379.2, intron 1 of 4) protein_coding-intron (ENSMUSG00000071379.2, intron 1 of 3) 8767 ENSMUSG00000071379.2 ENSMUSG00000071379 ENSMUST00000222944 Hpcal1 protein_coding Interval_77343 chr17 88086020 88086614 + 0 NA Intergenic Intergenic -21074 ENSMUSG00000005371.15 ENSMUSG00000005371 ENSMUST00000235056 Fbxo11 protein_coding Interval_136766 chr6 59353267 59353751 + 0 NA exon (ENSMUSG00000045441.5, exon 2 of 2) protein_coding-exon (ENSMUSG00000045441.5, exon 2 of 2) 72785 ENSMUSG00000045441.5 ENSMUSG00000045441 ENSMUST00000051065 Gprin3 protein_coding Interval_13681 chr10 20975801 20976405 + 0 NA intron (ENSMUSG00000019986.17, intron 8 of 23) protein_coding-intron (ENSMUSG00000019986.17, intron 9 of 23) 57690 ENSMUSG00000111006.1 ENSMUSG00000111006 ENSMUST00000215366 Gm10826 TEC Interval_116807 chr4 117379852 117381207 + 0 NA intron (ENSMUSG00000028677.19, intron 2 of 2) protein_coding-intron (ENSMUSG00000028677.19, intron 2 of 14) -65421 ENSMUSG00000086876.1 ENSMUSG00000086876 ENSMUST00000136115 Gm12828 antisense Interval_143181 chr7 4260372 4261260 + 0 NA Intergenic Intergenic 3115 ENSMUSG00000082042.1 ENSMUSG00000082042 ENSMUST00000119300 Gm15923 unprocessed_pseudogene Interval_22794 chr11 15729424 15729870 + 0 NA Intergenic Intergenic 247341 ENSMUSG00000083292.1 ENSMUSG00000083292 ENSMUST00000122400 Gm12010 processed_pseudogene Interval_127866 chr5 108379287 108379624 + 0 NA Intergenic Intergenic 8593 ENSMUSG00000072769.6 ENSMUSG00000072769 ENSMUST00000199724 Gm10419 lincRNA Interval_41776 chr12 119011455 119012250 + 0 NA Intergenic Intergenic 55578 ENSMUSG00000114030.1 ENSMUSG00000114030 ENSMUST00000221798 Gm18921 processed_pseudogene Interval_94341 chr2 89951578 89951954 + 0 NA Intergenic Intergenic -3102 ENSMUSG00000068806.5 ENSMUSG00000068806 ENSMUST00000090695 Olfr1259 protein_coding Interval_120221 chr4 144408208 144408488 + 0 NA promoter-TSS (ENSMUSG00000028591.11) protein_coding-promoter-TSS (ENSMUSG00000028591.11) 69 ENSMUSG00000028591.11 ENSMUSG00000028591 ENSMUST00000123854 Pramef12 protein_coding Interval_10687 chr1 172824583 172824839 + 0 NA intron (ENSMUSG00000037942.5, intron 1 of 1) protein_coding-intron (ENSMUSG00000037942.5, intron 1 of 1) 18927 ENSMUSG00000070182.1 ENSMUSG00000070182 ENSMUST00000093672 Gm24817 snRNA Interval_68943 chr16 89581264 89581559 + 0 NA Intergenic Intergenic -3124 ENSMUSG00000116870.1 ENSMUSG00000116870 ENSMUST00000231309 Gm49696 lincRNA Interval_55245 chr14 79606011 79606332 + 0 NA intron (ENSMUSG00000022024.10, intron 6 of 10) protein_coding-intron (ENSMUSG00000022024.10, intron 7 of 12) 18362 ENSMUSG00000022024.10 ENSMUSG00000022024 ENSMUST00000226320 Sugt1 protein_coding Interval_32785 chr11 110572390 110573127 + 0 NA Intergenic Intergenic 28251 ENSMUSG00000085985.1 ENSMUSG00000085985 ENSMUST00000144689 Gm11682 lincRNA Interval_6880 chr1 120327787 120328145 + 0 NA Intergenic Intergenic -12616 ENSMUSG00000036907.9 ENSMUSG00000036907 ENSMUST00000037286 C1ql2 protein_coding Interval_20060 chr10 112894867 112896118 + 0 NA Intergenic Intergenic -33009 ENSMUSG00000097185.1 ENSMUSG00000097185 ENSMUST00000180464 Gm26596 TEC Interval_2031 chr1 36003433 36004986 + 0 NA intron (ENSMUSG00000103708.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000103708.1, intron 1 of 2) 6781 ENSMUSG00000103708.1 ENSMUSG00000103708 ENSMUST00000194823 Gm33222 lincRNA Interval_16593 chr10 64730240 64731067 + 0 NA intron (ENSMUSG00000060843.11, intron 13 of 17) protein_coding-intron (ENSMUSG00000060843.11, intron 12 of 16) 389714 ENSMUSG00000100528.1 ENSMUSG00000100528 ENSMUST00000187710 Gm28881 lincRNA Interval_7578 chr1 132298264 132299399 + 0 NA exon (ENSMUSG00000042115.4, exon 1 of 5) protein_coding-exon (ENSMUSG00000042115.4, exon 1 of 5) 205 ENSMUSG00000042115.4 ENSMUSG00000042115 ENSMUST00000046071 Klhdc8a protein_coding Interval_4800 chr1 79084460 79084875 + 0 NA intron (ENSMUSG00000099706.1, intron 2 of 3) lincRNA-intron (ENSMUSG00000099706.1, intron 2 of 3) -116588 ENSMUSG00000072978.3 ENSMUSG00000072978 ENSMUST00000049117 Gm5830 processed_pseudogene Interval_99758 chr2 164737658 164737889 + 0 NA intron (ENSMUSG00000076434.9, intron 1 of 3) protein_coding-intron (ENSMUSG00000076434.9, intron 1 of 3) 8158 ENSMUSG00000076434.9 ENSMUSG00000076434 ENSMUST00000130227 Wfdc3 protein_coding Interval_139832 chr6 109597370 109597654 + 0 NA Intergenic Intergenic 47141 ENSMUSG00000108272.1 ENSMUSG00000108272 ENSMUST00000203532 Gm44161 processed_pseudogene Interval_62157 chr15 88354105 88354441 + 0 NA intron (ENSMUSG00000116331.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000116331.1, intron 1 of 2) -38641 ENSMUSG00000115880.1 ENSMUSG00000115880 ENSMUST00000230151 4930445N06Rik lincRNA Interval_118304 chr4 130163323 130164003 + 0 NA TTS (ENSMUSG00000028776.14) protein_coding-TTS (ENSMUSG00000028776.14) 11129 ENSMUSG00000028776.14 ENSMUSG00000028776 ENSMUST00000133660 Tinagl1 protein_coding Interval_58472 chr15 34912979 34913702 + 0 NA intron (ENSMUSG00000022329.15, intron 10 of 10) protein_coding-intron (ENSMUSG00000022329.15, intron 10 of 10) 46897 ENSMUSG00000022329.15 ENSMUSG00000022329 ENSMUST00000138841 Stk3 protein_coding Interval_124857 chr5 57066279 57066764 + 0 NA Intergenic Intergenic -44303 ENSMUSG00000088751.1 ENSMUSG00000088751 ENSMUST00000158126 Gm24902 snoRNA Interval_86850 chr19 44338266 44338708 + 0 NA intron (ENSMUSG00000050195.8, intron 3 of 5) protein_coding-intron (ENSMUSG00000050195.8, intron 3 of 5) 5395 ENSMUSG00000050195.8 ENSMUSG00000050195 ENSMUST00000058856 Scd4 protein_coding Interval_83126 chr18 81793942 81795369 + 0 NA intron (ENSMUSG00000118254.1, intron 2 of 5) lincRNA-intron (ENSMUSG00000118254.1, intron 2 of 5) 22596 ENSMUSG00000118254.1 ENSMUSG00000118254 ENSMUST00000236148 Gm46614 lincRNA Interval_75664 chr17 70323520 70324126 + 0 NA intron (ENSMUSG00000003279.17, intron 4 of 8) protein_coding-intron (ENSMUSG00000003279.17, intron 4 of 14) -397992 ENSMUSG00000117078.1 ENSMUSG00000117078 ENSMUST00000232868 Gm4561 processed_pseudogene Interval_33839 chr11 118908325 118910134 + 0 NA intron (ENSMUSG00000025576.17, intron 1 of 13) protein_coding-intron (ENSMUSG00000025576.17, intron 1 of 14) -42009 ENSMUSG00000084887.1 ENSMUSG00000084887 ENSMUST00000127327 Gm11749 sense_intronic Interval_18382 chr10 85451078 85452197 + 0 NA intron (ENSMUSG00000020042.15, intron 1 of 16) protein_coding-intron (ENSMUSG00000020042.15, intron 1 of 9) 117736 ENSMUSG00000087895.1 ENSMUSG00000087895 ENSMUST00000157270 Gm25281 miRNA Interval_141318 chr6 127149567 127155479 + 0 NA promoter-TSS (ENSMUSG00000000184.12) protein_coding-promoter-TSS (ENSMUSG00000000184.12) -1516 ENSMUSG00000000184.12 ENSMUSG00000000184 ENSMUST00000201857 Ccnd2 protein_coding Interval_77959 chr18 6144962 6145438 + 0 NA Intergenic Intergenic -33220 ENSMUSG00000041225.16 ENSMUSG00000041225 ENSMUST00000182572 Arhgap12 protein_coding Interval_47510 chr13 86001369 86002029 + 0 NA Intergenic Intergenic 43349 ENSMUSG00000064917.1 ENSMUSG00000064917 ENSMUST00000082983 Gm22574 TEC Interval_77270 chr17 87691669 87692159 + 0 NA intron (ENSMUSG00000024151.13, intron 7 of 9) protein_coding-intron (ENSMUSG00000024151.13, intron 7 of 15) -4627 ENSMUSG00000024151.13 ENSMUSG00000024151 ENSMUST00000174703 Msh2 protein_coding Interval_70409 chr17 9892272 9892739 + 0 NA Intergenic Intergenic 28086 ENSMUSG00000117110.1 ENSMUSG00000117110 ENSMUST00000233332 Gm49808 lincRNA Interval_82055 chr18 67397800 67399144 + 0 NA intron (ENSMUSG00000001473.7, intron 1 of 1) protein_coding-intron (ENSMUSG00000001473.7, intron 3 of 3) 6205 ENSMUSG00000001473.7 ENSMUSG00000001473 ENSMUST00000236667 Tubb6 protein_coding Interval_144529 chr7 25718538 25720423 + 0 NA promoter-TSS (ENSMUSG00000002608.8) protein_coding-promoter-TSS (ENSMUSG00000002608.8) -489 ENSMUSG00000002608.8 ENSMUSG00000002608 ENSMUST00000140847 Ccdc97 protein_coding Interval_160679 chr8 111554960 111555782 + 0 NA intron (ENSMUSG00000033545.14, intron 1 of 3) protein_coding-intron (ENSMUSG00000033545.14, intron 1 of 3) 17793 ENSMUSG00000033545.14 ENSMUSG00000033545 ENSMUST00000173819 Znrf1 protein_coding Interval_138937 chr6 93657332 93658096 + 0 NA Intergenic Intergenic -7489 ENSMUSG00000107739.1 ENSMUSG00000107739 ENSMUST00000203479 Gm7812 processed_pseudogene Interval_130065 chr5 124046866 124047897 + 0 NA intron (ENSMUSG00000106261.1, intron 3 of 4) lincRNA-intron (ENSMUSG00000106261.1, intron 3 of 4) 4971 ENSMUSG00000104818.1 ENSMUSG00000104818 ENSMUST00000199099 Gm43661 lincRNA Interval_74594 chr17 53587173 53589052 + 0 NA intron (ENSMUSG00000000708.14, intron 1 of 5) protein_coding-intron (ENSMUSG00000000708.14, intron 1 of 17) 10551 ENSMUSG00000096517.1 ENSMUSG00000096517 ENSMUST00000180049 Gm6919 processed_pseudogene Interval_159609 chr8 95779303 95780119 + 0 NA intron (ENSMUSG00000036550.16, intron 2 of 47) protein_coding-intron (ENSMUSG00000036550.16, intron 2 of 47) -1181 ENSMUSG00000110556.1 ENSMUSG00000110556 ENSMUST00000212863 Gm45762 TEC Interval_133176 chr5 150350773 150351069 + 0 NA intron (ENSMUSG00000056602.12, intron 7 of 60) protein_coding-intron (ENSMUSG00000056602.12, intron 7 of 60) -51480 ENSMUSG00000106719.1 ENSMUSG00000106719 ENSMUST00000201397 Gm42556 antisense Interval_78434 chr18 12843056 12843265 + 0 NA intron (ENSMUSG00000044252.18, intron 3 of 7) protein_coding-intron (ENSMUSG00000044252.18, intron 15 of 27) 18045 ENSMUSG00000044252.18 ENSMUSG00000044252 ENSMUST00000142467 Osbpl1a protein_coding Interval_24869 chr11 40651505 40653275 + 0 NA Intergenic Intergenic 21466 ENSMUSG00000082087.4 ENSMUSG00000082087 ENSMUST00000122180 Gm12138 processed_pseudogene Interval_35928 chr12 32075392 32075904 + 0 NA TTS (ENSMUSG00000112569.1) lincRNA-TTS (ENSMUSG00000112569.1) 5202 ENSMUSG00000112569.1 ENSMUSG00000112569 ENSMUST00000219617 Gm33111 lincRNA Interval_39107 chr12 85104048 85105288 + 0 NA intron (ENSMUSG00000042320.17, intron 1 of 4) protein_coding-intron (ENSMUSG00000042320.17, intron 1 of 4) -2321 ENSMUSG00000102935.1 ENSMUSG00000102935 ENSMUST00000192514 Gm38355 TEC Interval_40498 chr12 105265828 105266491 + 0 NA Intergenic Intergenic -43463 ENSMUSG00000041359.14 ENSMUSG00000041359 ENSMUST00000176952 Tcl1 protein_coding Interval_71448 chr17 23802417 23804026 + 0 NA promoter-TSS (ENSMUSG00000039218.17) protein_coding-promoter-TSS (ENSMUSG00000039218.17) -13 ENSMUSG00000039218.17 ENSMUSG00000039218 ENSMUST00000190568 Srrm2 protein_coding Interval_9196 chr1 155013593 155014589 + 0 NA intron (ENSMUSG00000101880.1, intron 3 of 3) lincRNA-intron (ENSMUSG00000101880.1, intron 3 of 3) -17648 ENSMUSG00000101433.1 ENSMUSG00000101433 ENSMUST00000191584 Gm29441 processed_pseudogene Interval_46253 chr13 63046465 63047197 + 0 NA intron (ENSMUSG00000021458.17, intron 2 of 15) protein_coding-intron (ENSMUSG00000021458.17, intron 2 of 15) 36872 ENSMUSG00000113708.1 ENSMUSG00000113708 ENSMUST00000220958 Gm47584 TEC Interval_174322 chrX 144369665 144371892 + 0 NA intron (ENSMUSG00000041718.16, intron 26 of 26) protein_coding-intron (ENSMUSG00000041718.16, intron 13 of 13) -49523 ENSMUSG00000080922.1 ENSMUSG00000080922 ENSMUST00000121333 Gm2214 processed_pseudogene Interval_28322 chr11 75192931 75195610 + 0 NA exon (ENSMUSG00000045287.6, exon 1 of 2) protein_coding-exon (ENSMUSG00000045287.6, exon 1 of 2) 487 ENSMUSG00000045287.6 ENSMUSG00000045287 ENSMUST00000102514 Rtn4rl1 protein_coding Interval_42896 chr13 21210262 21210796 + 0 NA Intergenic Intergenic -22973 ENSMUSG00000113104.1 ENSMUSG00000113104 ENSMUST00000220690 Gm47806 antisense Interval_134408 chr6 28409952 28410949 + 0 NA Intergenic Intergenic -13259 ENSMUSG00000020440.13 ENSMUSG00000020440 ENSMUST00000202028 Arf5 protein_coding Interval_62840 chr15 97355453 97355831 + 0 NA intron (ENSMUSG00000044250.8, intron 3 of 5) protein_coding-intron (ENSMUSG00000044250.8, intron 3 of 5) -5560 ENSMUSG00000044250.8 ENSMUSG00000044250 ENSMUST00000226495 Pced1b protein_coding Interval_151813 chr7 126817654 126818051 + 0 NA TTS (ENSMUSG00000058966.13) protein_coding-TTS (ENSMUSG00000058966.13) -6801 ENSMUSG00000058966.13 ENSMUSG00000058966 ENSMUST00000207020 Fam57b protein_coding Interval_103969 chr3 55686983 55687631 + 0 NA intron (ENSMUSG00000027799.12, intron 1 of 12) protein_coding-intron (ENSMUSG00000027799.12, intron 47 of 57) -95203 ENSMUSG00000056947.5 ENSMUSG00000056947 ENSMUST00000075422 Mab21l1 protein_coding Interval_5355 chr1 87826487 87827055 + 0 NA exon (ENSMUSG00000056055.13, exon 1 of 3) protein_coding-exon (ENSMUSG00000056055.13, exon 1 of 3) 23091 ENSMUSG00000056055.13 ENSMUSG00000056055 ENSMUST00000145385 Sag protein_coding Interval_87915 chr19 57081703 57081924 + 0 NA intron (ENSMUSG00000025085.16, intron 7 of 20) protein_coding-intron (ENSMUSG00000025085.16, intron 7 of 25) -144575 ENSMUSG00000025083.18 ENSMUSG00000025083 ENSMUST00000132851 Afap1l2 protein_coding Interval_21447 chr10 128654983 128655792 + 0 NA intron (ENSMUSG00000002578.18, intron 1 of 7) protein_coding-intron (ENSMUSG00000002578.18, intron 1 of 7) 9503 ENSMUSG00000097372.1 ENSMUSG00000097372 ENSMUST00000180875 Gm26876 lincRNA Interval_30373 chr11 93948256 93950141 + 0 NA TTS (ENSMUSG00000020857.11) protein_coding-TTS (ENSMUSG00000020857.11) 6585 ENSMUSG00000020857.11 ENSMUSG00000020857 ENSMUST00000072566 Nme2 protein_coding Interval_173160 chrX 73682158 73682665 + 0 NA TTS (ENSMUSG00000019558.14) protein_coding-TTS (ENSMUSG00000019558.14) 6904 ENSMUSG00000019558.14 ENSMUSG00000019558 ENSMUST00000167828 Slc6a8 protein_coding Interval_76961 chr17 85186155 85186705 + 0 NA intron (ENSMUSG00000071037.6, intron 3 of 10) protein_coding-intron (ENSMUSG00000071037.6, intron 3 of 10) 95824 ENSMUSG00000071037.6 ENSMUSG00000071037 ENSMUST00000234501 Camkmt protein_coding Interval_65720 chr16 25964016 25964324 + 0 NA intron (ENSMUSG00000038168.5, intron 14 of 14) protein_coding-intron (ENSMUSG00000038168.5, intron 14 of 14) 7695 ENSMUSG00000090257.1 ENSMUSG00000090257 ENSMUST00000161614 Gm4524 antisense Interval_113474 chr4 55258462 55260275 + 0 NA intron (ENSMUSG00000087614.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000087614.1, intron 1 of 2) 4628 ENSMUSG00000081504.3 ENSMUSG00000081504 ENSMUST00000121282 Gm12508 processed_pseudogene Interval_47377 chr13 82359428 82359750 + 0 NA Intergenic Intergenic 20054 ENSMUSG00000114932.1 ENSMUSG00000114932 ENSMUST00000224376 Gm4936 processed_pseudogene Interval_79475 chr18 32169124 32169355 + 0 NA intron (ENSMUSG00000024383.9, intron 1 of 6) protein_coding-intron (ENSMUSG00000024383.9, intron 1 of 16) 6146 ENSMUSG00000024383.9 ENSMUSG00000024383 ENSMUST00000096575 Map3k2 protein_coding Interval_134975 chr6 34255148 34255718 + 0 NA Intergenic Intergenic -34832 ENSMUSG00000086762.1 ENSMUSG00000086762 ENSMUST00000138275 Gm14546 antisense Interval_58222 chr15 31175457 31178048 + 0 NA Intergenic Intergenic 17586 ENSMUSG00000077468.1 ENSMUSG00000077468 ENSMUST00000104280 Gm26416 snoRNA Interval_151435 chr7 122416015 122416185 + 0 NA promoter-TSS (ENSMUSG00000052889.11) protein_coding-promoter-TSS (ENSMUSG00000052889.11) 13645 ENSMUSG00000108317.1 ENSMUSG00000108317 ENSMUST00000206898 Gm44663 TEC Interval_60131 chr15 66003566 66004168 + 0 NA intron (ENSMUSG00000056258.9, intron 11 of 14) protein_coding-intron (ENSMUSG00000056258.9, intron 11 of 14) -27063 ENSMUSG00000072511.3 ENSMUSG00000072511 ENSMUST00000100584 Hhla1 protein_coding Interval_46134 chr13 61920729 61920980 + 0 NA Intergenic Intergenic 3305 ENSMUSG00000113887.1 ENSMUSG00000113887 ENSMUST00000222548 Gm35619 processed_pseudogene Interval_92999 chr2 69432295 69432655 + 0 NA intron (ENSMUSG00000027070.14, intron 72 of 78) protein_coding-intron (ENSMUSG00000027070.14, intron 72 of 78) 52030 ENSMUSG00000027068.6 ENSMUSG00000027068 ENSMUST00000063690 Dhrs9 protein_coding Interval_104535 chr3 67503413 67504815 + 0 NA intron (ENSMUSG00000049404.7, intron 1 of 5) protein_coding-intron (ENSMUSG00000049404.7, intron 1 of 5) 11409 ENSMUSG00000049404.7 ENSMUSG00000049404 ENSMUST00000054825 Rarres1 protein_coding Interval_163275 chr9 20492192 20493697 + 0 NA promoter-TSS (ENSMUSG00000059475.13) protein_coding-promoter-TSS (ENSMUSG00000059475.13) -202 ENSMUSG00000059475.13 ENSMUSG00000059475 ENSMUST00000164250 Zfp426 protein_coding Interval_134663 chr6 30204871 30206191 + 0 NA Intergenic Intergenic 32638 ENSMUSG00000103108.2 ENSMUSG00000103108 ENSMUST00000194541 Rncr4 lincRNA Interval_84461 chr19 11280138 11280796 + 0 NA promoter-TSS (ENSMUSG00000054523.13) protein_coding-promoter-TSS (ENSMUSG00000054523.13) -1024 ENSMUSG00000054523.13 ENSMUSG00000054523 ENSMUST00000188267 Ms4a5 protein_coding Interval_43562 chr13 33539830 33540458 + 0 NA Intergenic Intergenic -2855 ENSMUSG00000082722.1 ENSMUSG00000082722 ENSMUST00000118019 Gm11393 unprocessed_pseudogene Interval_53400 chr14 56960041 56960693 + 0 NA TTS (ENSMUSG00000021945.9) protein_coding-TTS (ENSMUSG00000021945.9) 10813 ENSMUSG00000021945.9 ENSMUSG00000021945 ENSMUST00000226025 Zmym2 protein_coding Interval_148874 chr7 89526867 89527518 + 0 NA promoter-TSS (ENSMUSG00000039405.7) protein_coding-promoter-TSS (ENSMUSG00000039405.7) -9322 ENSMUSG00000039405.7 ENSMUSG00000039405 ENSMUST00000208903 Prss23 protein_coding Interval_100648 chr2 170731030 170732562 + 0 NA promoter-TSS (ENSMUSG00000027560.4) protein_coding-promoter-TSS (ENSMUSG00000027560.4) -11 ENSMUSG00000027560.4 ENSMUSG00000027560 ENSMUST00000029075 Dok5 protein_coding Interval_115743 chr4 103223060 103223366 + 0 NA Intergenic Intergenic 5511 ENSMUSG00000107726.1 ENSMUSG00000107726 ENSMUST00000204816 Gm44037 lincRNA Interval_139841 chr6 110736631 110736914 + 0 NA intron (ENSMUSG00000056755.13, intron 2 of 9) protein_coding-intron (ENSMUSG00000056755.13, intron 1 of 10) -1578 ENSMUSG00000092603.1 ENSMUSG00000092603 ENSMUST00000174010 Gm20386 processed_pseudogene Interval_28091 chr11 72759657 72759982 + 0 NA promoter-TSS (ENSMUSG00000020790.14) protein_coding-promoter-TSS (ENSMUSG00000020790.14) 36022 ENSMUSG00000057778.14 ENSMUSG00000057778 ENSMUST00000169476 Cyb5d2 protein_coding Interval_28458 chr11 76035539 76035919 + 0 NA Intergenic Intergenic -7947 ENSMUSG00000020846.6 ENSMUSG00000020846 ENSMUST00000021207 Rflnb protein_coding Interval_39847 chr12 99041742 99041981 + 0 NA intron (ENSMUSG00000114089.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000114089.1, intron 1 of 1) -5369 ENSMUSG00000062582.6 ENSMUSG00000062582 ENSMUST00000076166 Rpl30-ps8 processed_pseudogene Interval_92672 chr2 62369522 62370302 + 0 NA intron (ENSMUSG00000035000.8, intron 3 of 3) protein_coding-intron (ENSMUSG00000035000.8, intron 10 of 25) 12841 ENSMUSG00000087518.1 ENSMUSG00000087518 ENSMUST00000136879 Gm13561 antisense Interval_81960 chr18 66428631 66430070 + 0 NA Intergenic Intergenic 10891 ENSMUSG00000118218.1 ENSMUSG00000118218 ENSMUST00000236049 Gm50154 processed_pseudogene Interval_12885 chr10 7277351 7277811 + 0 NA Intergenic Intergenic 113202 ENSMUSG00000112057.1 ENSMUSG00000112057 ENSMUST00000220179 Gm21321 processed_pseudogene Interval_158108 chr8 78783446 78783720 + 0 NA Intergenic Intergenic -5366 ENSMUSG00000109768.1 ENSMUSG00000109768 ENSMUST00000209348 Gm45446 processed_pseudogene Interval_94605 chr2 92599631 92600730 + 0 NA intron (ENSMUSG00000027221.5, intron 1 of 2) protein_coding-intron (ENSMUSG00000027221.5, intron 1 of 2) 473 ENSMUSG00000027221.5 ENSMUSG00000027221 ENSMUST00000065797 Chst1 protein_coding Interval_33067 chr11 114126609 114128567 + 0 NA Intergenic Intergenic 36182 ENSMUSG00000086760.1 ENSMUSG00000086760 ENSMUST00000129365 1700025D23Rik lincRNA Interval_117736 chr4 125921334 125922712 + 0 NA intron (ENSMUSG00000085562.7, intron 1 of 6) lincRNA-intron (ENSMUSG00000085562.7, intron 1 of 1) 394 ENSMUSG00000085562.7 ENSMUSG00000085562 ENSMUST00000144539 2610028E06Rik lincRNA Interval_18755 chr10 90036315 90036744 + 0 NA intron (ENSMUSG00000058589.14, intron 2 of 25) protein_coding-intron (ENSMUSG00000058589.14, intron 2 of 17) 98288 ENSMUSG00000112140.1 ENSMUSG00000112140 ENSMUST00000217774 Gm5780 processed_pseudogene Interval_166928 chr9 63982904 63983918 + 0 NA intron (ENSMUSG00000036867.7, intron 3 of 3) protein_coding-intron (ENSMUSG00000036867.7, intron 3 of 3) 38621 ENSMUSG00000036867.7 ENSMUSG00000036867 ENSMUST00000179458 Smad6 protein_coding Interval_94111 chr2 84369308 84369691 + 0 NA intron (ENSMUSG00000059588.13, intron 4 of 12) protein_coding-intron (ENSMUSG00000059588.13, intron 8 of 15) -51188 ENSMUSG00000084198.1 ENSMUSG00000084198 ENSMUST00000119708 Gm13711 unprocessed_pseudogene Interval_136592 chr6 56299105 56300349 + 0 NA intron (ENSMUSG00000004347.17, intron 4 of 19) protein_coding-intron (ENSMUSG00000004347.17, intron 2 of 18) -126696 ENSMUSG00000106152.1 ENSMUSG00000106152 ENSMUST00000198921 Gm44413 miRNA Interval_163687 chr9 24343747 24344067 + 0 NA exon (ENSMUSG00000074465.2, exon 2 of 4) antisense-exon (ENSMUSG00000074465.2, exon 2 of 4) 2250 ENSMUSG00000074465.2 ENSMUSG00000074465 ENSMUST00000098926 Gm10701 antisense Interval_29488 chr11 84402733 84403357 + 0 NA Intergenic Intergenic 110477 ENSMUSG00000018697.14 ENSMUSG00000018697 ENSMUST00000148434 Aatf protein_coding Interval_98131 chr2 148575458 148575851 + 0 NA Intergenic Intergenic -49057 ENSMUSG00000088870.1 ENSMUSG00000088870 ENSMUST00000158245 Gm25866 snoRNA Interval_63639 chr15 102486012 102486627 + 0 NA TTS (ENSMUSG00000099112.1) protein_coding-intron (ENSMUSG00000056851.14, intron 7 of 9) 411 ENSMUSG00000099112.1 ENSMUSG00000099112 ENSMUST00000184881 Gm27406 misc_RNA Interval_97006 chr2 130438464 130438779 + 0 NA TTS (ENSMUSG00000027411.17) protein_coding-TTS (ENSMUSG00000027411.17) -1701 ENSMUSG00000027411.17 ENSMUSG00000027411 ENSMUST00000134677 Vps16 protein_coding Interval_18855 chr10 91319392 91319578 + 0 NA Intergenic Intergenic 9140 ENSMUSG00000111525.1 ENSMUSG00000111525 ENSMUST00000214371 Gm47082 lincRNA Interval_156435 chr8 48145492 48145992 + 0 NA intron (ENSMUSG00000031562.15, intron 3 of 3) protein_coding-intron (ENSMUSG00000031562.15, intron 3 of 3) 35580 ENSMUSG00000031562.15 ENSMUSG00000031562 ENSMUST00000174379 Dctd protein_coding Interval_76771 chr17 83927965 83928747 + 0 NA Intergenic Intergenic 10419 ENSMUSG00000117442.1 ENSMUSG00000117442 ENSMUST00000234364 1810073O08Rik lincRNA Interval_52983 chr14 52621994 52622622 + 0 NA promoter-TSS (ENSMUSG00000076761.1) TR_V_gene-promoter-TSS (ENSMUSG00000076761.1) -258 ENSMUSG00000076761.1 ENSMUSG00000076761 ENSMUST00000103570 Trav5-1 TR_V_gene Interval_140924 chr6 122772643 122772903 + 0 NA intron (ENSMUSG00000003153.10, intron 2 of 4) protein_coding-intron (ENSMUSG00000003153.10, intron 2 of 4) 7184 ENSMUSG00000003153.10 ENSMUSG00000003153 ENSMUST00000168801 Slc2a3 protein_coding Interval_173147 chrX 73502805 73503897 + 0 NA intron (ENSMUSG00000031376.15, intron 1 of 21) protein_coding-intron (ENSMUSG00000031376.15, intron 1 of 20) 265 ENSMUSG00000031376.15 ENSMUSG00000031376 ENSMUST00000114479 Atp2b3 protein_coding Interval_45133 chr13 52570430 52570724 + 0 NA Intergenic Intergenic -12926 ENSMUSG00000021457.14 ENSMUSG00000021457 ENSMUST00000140339 Syk protein_coding Interval_39364 chr12 86916724 86917788 + 0 NA Intergenic Intergenic -32458 ENSMUSG00000034168.7 ENSMUSG00000034168 ENSMUST00000038422 Irf2bpl protein_coding Interval_50177 chr14 8641500 8641687 + 0 NA intron (ENSMUSG00000021747.12, intron 4 of 12) protein_coding-intron (ENSMUSG00000021747.12, intron 4 of 15) 24646 ENSMUSG00000021747.12 ENSMUSG00000021747 ENSMUST00000225744 4930452B06Rik protein_coding Interval_127594 chr5 105679550 105679751 + 0 NA Intergenic Intergenic -51739 ENSMUSG00000046079.16 ENSMUSG00000046079 ENSMUST00000134605 Lrrc8d protein_coding Interval_18005 chr10 81320130 81321507 + 0 NA promoter-TSS (ENSMUSG00000034889.8) protein_coding-promoter-TSS (ENSMUSG00000034889.8) -2684 ENSMUSG00000034889.8 ENSMUSG00000034889 ENSMUST00000219285 Cactin protein_coding Interval_137659 chr6 78113468 78114259 + 0 NA Intergenic Intergenic -44276 ENSMUSG00000097964.1 ENSMUSG00000097964 ENSMUST00000183058 Gm21045 processed_pseudogene Interval_128953 chr5 116288338 116290701 + 0 NA promoter-TSS (ENSMUSG00000043913.14) protein_coding-promoter-TSS (ENSMUSG00000043913.14) -556 ENSMUSG00000043913.14 ENSMUSG00000043913 ENSMUST00000086483 Ccdc60 protein_coding Interval_97640 chr2 141578210 141578975 + 0 NA intron (ENSMUSG00000068205.14, intron 1 of 13) protein_coding-intron (ENSMUSG00000068205.14, intron 6 of 17) -61898 ENSMUSG00000065347.1 ENSMUSG00000065347 ENSMUST00000083413 Gm25583 snRNA Interval_169234 chr9 95685807 95686429 + 0 NA intron (ENSMUSG00000015354.8, intron 2 of 4) protein_coding-intron (ENSMUSG00000015354.8, intron 5 of 8) 5812 ENSMUSG00000015354.8 ENSMUSG00000015354 ENSMUST00000151210 Pcolce2 protein_coding Interval_95639 chr2 113302532 113303479 + 0 NA Intergenic Intergenic 14732 ENSMUSG00000093660.1 ENSMUSG00000093660 ENSMUST00000176208 Gm26505 snRNA Interval_578 chr1 7732461 7733372 + 0 NA Intergenic Intergenic -2351 ENSMUSG00000103557.1 ENSMUSG00000103557 ENSMUST00000194872 Gm38216 processed_pseudogene Interval_90515 chr2 30893367 30894282 + 0 NA intron (ENSMUSG00000050737.13, intron 2 of 2) protein_coding-intron (ENSMUSG00000050737.13, intron 2 of 2) 30533 ENSMUSG00000084143.1 ENSMUSG00000084143 ENSMUST00000117436 Gm13400 processed_pseudogene Interval_146269 chr7 45072256 45072624 + 0 NA intron (ENSMUSG00000003421.13, intron 1 of 6) protein_coding-intron (ENSMUSG00000003421.13, intron 1 of 8) 9967 ENSMUSG00000003421.13 ENSMUSG00000003421 ENSMUST00000210668 Nosip protein_coding Interval_44371 chr13 44368868 44370045 + 0 NA intron (ENSMUSG00000112936.1, intron 2 of 2) lincRNA-intron (ENSMUSG00000112936.1, intron 2 of 2) 21661 ENSMUSG00000112936.1 ENSMUSG00000112936 ENSMUST00000222879 Gm33958 lincRNA Interval_33545 chr11 117123530 117124627 + 0 NA intron (ENSMUSG00000020823.16, intron 2 of 11) protein_coding-intron (ENSMUSG00000020823.16, intron 2 of 16) -8412 ENSMUSG00000089343.1 ENSMUSG00000089343 ENSMUST00000158718 Gm22667 misc_RNA Interval_163860 chr9 27249649 27250018 + 0 NA Intergenic Intergenic 43511 ENSMUSG00000111387.1 ENSMUSG00000111387 ENSMUST00000217080 Gm48803 lincRNA Interval_33558 chr11 117204450 117204704 + 0 NA intron (ENSMUSG00000059248.13, intron 1 of 11) protein_coding-intron (ENSMUSG00000059248.13, intron 1 of 11) 49508 ENSMUSG00000020823.16 ENSMUSG00000020823 ENSMUST00000153437 Sec14l1 protein_coding Interval_85352 chr19 25122170 25122483 + 0 NA intron (ENSMUSG00000052085.7, intron 16 of 47) protein_coding-intron (ENSMUSG00000052085.7, intron 16 of 47) 43890 ENSMUSG00000065634.1 ENSMUSG00000065634 ENSMUST00000083700 Gm24252 snoRNA Interval_72335 chr17 29268479 29269405 + 0 NA promoter-TSS (ENSMUSG00000052712.17) protein_coding-promoter-TSS (ENSMUSG00000052712.17) 4943 ENSMUSG00000117614.1 ENSMUSG00000117614 ENSMUST00000234345 Gm50068 antisense Interval_169719 chr9 100653280 100653727 + 0 NA intron (ENSMUSG00000037286.15, intron 1 of 8) protein_coding-intron (ENSMUSG00000037286.15, intron 1 of 32) -12336 ENSMUSG00000103657.1 ENSMUSG00000103657 ENSMUST00000192389 Gm37204 TEC Interval_68009 chr16 63438965 63439674 + 0 NA Intergenic Intergenic 52798 ENSMUSG00000116752.1 ENSMUSG00000116752 ENSMUST00000231817 Gm49622 lincRNA Interval_81555 chr18 61664769 61667574 + 0 NA promoter-TSS (ENSMUSG00000097324.8) lincRNA-promoter-TSS (ENSMUSG00000097324.8) -681 ENSMUSG00000097324.8 ENSMUSG00000097324 ENSMUST00000181155 Carmn lincRNA Interval_65328 chr16 21597540 21597785 + 0 NA intron (ENSMUSG00000033653.18, intron 30 of 31) protein_coding-intron (ENSMUSG00000033653.18, intron 43 of 45) 64550 ENSMUSG00000033653.18 ENSMUSG00000033653 ENSMUST00000127903 Vps8 protein_coding Interval_67910 chr16 59450728 59451264 + 0 NA intron (ENSMUSG00000074991.5, intron 8 of 8) protein_coding-intron (ENSMUSG00000074991.5, intron 8 of 8) 18242 ENSMUSG00000099983.1 ENSMUSG00000099983 ENSMUST00000188342 1700022E09Rik lincRNA Interval_147161 chr7 63947304 63948762 + 0 NA promoter-TSS (ENSMUSG00000108418.1) TEC-promoter-TSS (ENSMUSG00000108418.1) -645 ENSMUSG00000108418.1 ENSMUSG00000108418 ENSMUST00000206739 Gm44627 TEC Interval_114475 chr4 80714209 80714431 + 0 NA Intergenic Intergenic -132268 ENSMUSG00000005994.14 ENSMUSG00000005994 ENSMUST00000133932 Tyrp1 protein_coding Interval_84175 chr19 8442543 8443263 + 0 NA Intergenic Intergenic -37798 ENSMUSG00000052562.15 ENSMUSG00000052562 ENSMUST00000120540 Slc22a30 protein_coding Interval_81278 chr18 57347409 57347807 + 0 NA Intergenic Intergenic -7282 ENSMUSG00000024594.9 ENSMUSG00000024594 ENSMUST00000236709 Prrc1 protein_coding Interval_147545 chr7 68216274 68216505 + 0 NA intron (ENSMUSG00000005533.10, intron 2 of 3) protein_coding-intron (ENSMUSG00000005533.10, intron 19 of 20) 4551 ENSMUSG00000005533.10 ENSMUSG00000005533 ENSMUST00000208871 Igf1r protein_coding Interval_727 chr1 10194941 10195223 + 0 NA intron (ENSMUSG00000067851.11, intron 9 of 19) protein_coding-intron (ENSMUSG00000067851.11, intron 9 of 37) 3720 ENSMUSG00000102556.1 ENSMUSG00000102556 ENSMUST00000192111 Gm37569 TEC Interval_106329 chr3 95408806 95409033 + 0 NA Intergenic Intergenic 2288 ENSMUSG00000096177.2 ENSMUSG00000096177 ENSMUST00000177599 Gm5070 processed_pseudogene Interval_135929 chr6 48818939 48819218 + 0 NA promoter-TSS (ENSMUSG00000107574.1) processed_pseudogene-promoter-TSS (ENSMUSG00000107574.1) 54 ENSMUSG00000107574.1 ENSMUSG00000107574 ENSMUST00000204322 Gm17834 processed_pseudogene Interval_85025 chr19 21645683 21647835 + 0 NA intron (ENSMUSG00000035171.9, intron 1 of 5) protein_coding-intron (ENSMUSG00000035171.9, intron 1 of 3) 5851 ENSMUSG00000035171.9 ENSMUSG00000035171 ENSMUST00000178781 1110059E24Rik protein_coding Interval_137854 chr6 82956475 82957305 + 0 NA intron (ENSMUSG00000030041.9, intron 2 of 9) protein_coding-intron (ENSMUSG00000030041.9, intron 2 of 9) 4110 ENSMUSG00000107701.1 ENSMUSG00000107701 ENSMUST00000203190 Gm19287 processed_pseudogene Interval_56689 chr14 121394990 121396025 + 0 NA Intergenic Intergenic -9551 ENSMUSG00000115666.1 ENSMUSG00000115666 ENSMUST00000228299 Gm49031 processed_pseudogene Interval_75821 chr17 71649906 71650475 + 0 NA intron (ENSMUSG00000041057.10, intron 3 of 5) protein_coding-intron (ENSMUSG00000041057.10, intron 13 of 17) 7494 ENSMUSG00000041057.10 ENSMUSG00000041057 ENSMUST00000234339 Wdr43 protein_coding Interval_138859 chr6 92728235 92728883 + 0 NA Intergenic Intergenic -99073 ENSMUSG00000048636.7 ENSMUSG00000048636 ENSMUST00000133858 A730049H05Rik protein_coding Interval_62773 chr15 96778868 96779298 + 0 NA Intergenic Intergenic -12005 ENSMUSG00000095638.2 ENSMUSG00000095638 ENSMUST00000177677 Gm8888 processed_pseudogene Interval_7809 chr1 133856081 133857072 + 0 NA Intergenic Intergenic 21387 ENSMUSG00000100830.1 ENSMUSG00000100830 ENSMUST00000190927 Gm28441 lincRNA Interval_118148 chr4 129230797 129232972 + 0 NA intron (ENSMUSG00000050390.12, intron 1 of 3) protein_coding-intron (ENSMUSG00000050390.12, intron 1 of 6) -4404 ENSMUSG00000050390.12 ENSMUSG00000050390 ENSMUST00000146376 C77080 protein_coding Interval_48464 chr13 99213390 99214014 + 0 NA intron (ENSMUSG00000050919.9, intron 1 of 4) protein_coding-intron (ENSMUSG00000050919.9, intron 1 of 4) 28879 ENSMUSG00000050919.9 ENSMUSG00000050919 ENSMUST00000056558 Zfp366 protein_coding Interval_151906 chr7 127458289 127459620 + 0 NA promoter-TSS (ENSMUSG00000030822.15) protein_coding-promoter-TSS (ENSMUSG00000030822.15) 3485 ENSMUSG00000108465.1 ENSMUSG00000108465 ENSMUST00000205704 Gm45110 TEC Interval_153698 chr8 4719179 4719414 + 0 NA Intergenic Intergenic 3540 ENSMUSG00000108962.1 ENSMUSG00000108962 ENSMUST00000209127 Gm44959 unprocessed_pseudogene Interval_25232 chr11 45733459 45733729 + 0 NA Intergenic Intergenic -74493 ENSMUSG00000086686.1 ENSMUSG00000086686 ENSMUST00000137002 F630206G17Rik processed_transcript Interval_65563 chr16 23341474 23341949 + 0 NA intron (ENSMUSG00000022885.16, intron 5 of 7) protein_coding-intron (ENSMUSG00000022885.16, intron 5 of 7) 82024 ENSMUSG00000084439.1 ENSMUSG00000084439 ENSMUST00000122490 Gm23430 misc_RNA Interval_61339 chr15 80943009 80943266 + 0 NA Intergenic Intergenic 3098 ENSMUSG00000092868.1 ENSMUSG00000092868 ENSMUST00000175127 Mir5113 miRNA Interval_50991 chr14 21521662 21522763 + 0 NA intron (ENSMUSG00000021767.19, intron 1 of 15) protein_coding-intron (ENSMUSG00000021767.19, intron 2 of 16) 5337 ENSMUSG00000021767.19 ENSMUSG00000021767 ENSMUST00000226589 Kat6b protein_coding Interval_34384 chr12 3767479 3767679 + 0 NA intron (ENSMUSG00000071454.13, intron 16 of 20) protein_coding-intron (ENSMUSG00000071454.13, intron 15 of 18) -5433 ENSMUSG00000092286.1 ENSMUSG00000092286 ENSMUST00000173847 Dtnbos antisense Interval_55182 chr14 79109468 79110851 + 0 NA intron (ENSMUSG00000058997.8, intron 37 of 44) protein_coding-intron (ENSMUSG00000058997.8, intron 37 of 44) -3758 ENSMUSG00000115637.1 ENSMUSG00000115637 ENSMUST00000227710 Gm30970 processed_pseudogene Interval_52405 chr14 45676995 45677214 + 0 NA Intergenic Intergenic -9764 ENSMUSG00000086124.2 ENSMUSG00000086124 ENSMUST00000138379 A530076I17Rik lincRNA Interval_140192 chr6 115202996 115203227 + 0 NA intron (ENSMUSG00000009394.13, intron 1 of 10) protein_coding-intron (ENSMUSG00000009394.13, intron 1 of 12) -24232 ENSMUSG00000092004.1 ENSMUSG00000092004 ENSMUST00000166681 Gm17482 protein_coding Interval_111916 chr4 32529661 32530082 + 0 NA intron (ENSMUSG00000040270.16, intron 2 of 4) protein_coding-intron (ENSMUSG00000040270.16, intron 4 of 7) 15084 ENSMUSG00000084611.1 ENSMUSG00000084611 ENSMUST00000122662 Gm24371 misc_RNA Interval_10803 chr1 175299718 175300208 + 0 NA intron (ENSMUSG00000026527.13, intron 2 of 17) protein_coding-intron (ENSMUSG00000026527.13, intron 1 of 15) 80713 ENSMUSG00000104343.1 ENSMUSG00000104343 ENSMUST00000194955 5730408A14Rik TEC Interval_129508 chr5 120626280 120627201 + 0 NA exon (ENSMUSG00000107191.1, exon 1 of 1) antisense-exon (ENSMUSG00000107191.1, exon 1 of 1) 881 ENSMUSG00000107191.1 ENSMUSG00000107191 ENSMUST00000202387 Gm43579 antisense Interval_57151 chr15 7027587 7028136 + 0 NA Intergenic Intergenic 31824 ENSMUSG00000104334.1 ENSMUSG00000104334 ENSMUST00000192751 Gm38282 TEC Interval_40697 chr12 107523720 107523973 + 0 NA Intergenic Intergenic 35214 ENSMUSG00000060375.2 ENSMUSG00000060375 ENSMUST00000082269 3110018I06Rik lincRNA Interval_96203 chr2 120524353 120524562 + 0 NA exon (ENSMUSG00000027288.16, exon 11 of 22) protein_coding-exon (ENSMUSG00000027288.16, exon 11 of 22) 15403 ENSMUSG00000027288.16 ENSMUSG00000027288 ENSMUST00000147353 Zfp106 protein_coding Interval_83157 chr18 82390549 82391774 + 0 NA Intergenic Intergenic 15616 ENSMUSG00000024553.8 ENSMUSG00000024553 ENSMUST00000065224 Galr1 protein_coding Interval_50900 chr14 20660611 20661974 + 0 NA exon (ENSMUSG00000039376.13, exon 4 of 4) protein_coding-exon (ENSMUSG00000039376.13, exon 4 of 4) 3282 ENSMUSG00000039376.13 ENSMUSG00000039376 ENSMUST00000117386 Synpo2l protein_coding Interval_53941 chr14 63543298 63544483 + 0 NA promoter-TSS (ENSMUSG00000035078.6) protein_coding-promoter-TSS (ENSMUSG00000035078.6) -15731 ENSMUSG00000035078.6 ENSMUSG00000035078 ENSMUST00000058679 Mtmr9 protein_coding Interval_105630 chr3 88241055 88241644 + 0 NA Intergenic Intergenic 13360 ENSMUSG00000104445.1 ENSMUSG00000104445 ENSMUST00000171887 Rhbg protein_coding Interval_28567 chr11 76757318 76757508 + 0 NA intron (ENSMUSG00000010392.8, intron 1 of 4) protein_coding-intron (ENSMUSG00000010392.8, intron 2 of 8) 6154 ENSMUSG00000010392.8 ENSMUSG00000010392 ENSMUST00000137767 Gosr1 protein_coding Interval_62704 chr15 96370488 96371423 + 0 NA exon (ENSMUSG00000033237.19, exon 15 of 21) protein_coding-exon (ENSMUSG00000033237.19, exon 15 of 21) -7859 ENSMUSG00000033237.19 ENSMUSG00000033237 ENSMUST00000176739 Arid2 protein_coding Interval_30460 chr11 94498741 94500287 + 0 NA promoter-TSS (ENSMUSG00000010080.15) protein_coding-promoter-TSS (ENSMUSG00000010080.15) -394 ENSMUSG00000010080.15 ENSMUSG00000010080 ENSMUST00000150526 Epn3 protein_coding Interval_13185 chr10 12899981 12900265 + 0 NA Intergenic Intergenic 22967 ENSMUSG00000097378.8 ENSMUSG00000097378 ENSMUST00000180529 B230208H11Rik lincRNA Interval_165847 chr9 53789396 53789933 + 0 NA intron (ENSMUSG00000042195.9, intron 1 of 7) protein_coding-intron (ENSMUSG00000042195.9, intron 1 of 7) -21053 ENSMUSG00000042195.9 ENSMUSG00000042195 ENSMUST00000216515 Slc35f2 protein_coding Interval_106304 chr3 95263236 95264145 + 0 NA exon (ENSMUSG00000015711.8, exon 4 of 8) protein_coding-exon (ENSMUSG00000015711.8, exon 4 of 8) 5254 ENSMUSG00000015711.8 ENSMUSG00000015711 ENSMUST00000148959 Prune1 protein_coding Interval_52500 chr14 47104542 47105046 + 0 NA exon (ENSMUSG00000021838.17, exon 11 of 11) protein_coding-exon (ENSMUSG00000021838.17, exon 11 of 11) 11277 ENSMUSG00000072589.4 ENSMUSG00000072589 ENSMUST00000228010 Gm10371 antisense Interval_96668 chr2 127008432 127009235 + 0 NA promoter-TSS (ENSMUSG00000001998.15) protein_coding-promoter-TSS (ENSMUSG00000001998.15) 79 ENSMUSG00000001998.15 ENSMUSG00000001998 ENSMUST00000142740 Ap4e1 protein_coding Interval_94557 chr2 92202042 92203221 + 0 NA intron (ENSMUSG00000058318.15, intron 3 of 3) protein_coding-intron (ENSMUSG00000058318.15, intron 1 of 15) 10654 ENSMUSG00000088639.1 ENSMUSG00000088639 ENSMUST00000158014 Mir1955 miRNA Interval_44194 chr13 41825472 41825736 + 0 NA intron (ENSMUSG00000058022.14, intron 1 of 6) protein_coding-intron (ENSMUSG00000058022.14, intron 2 of 6) 2786 ENSMUSG00000058022.14 ENSMUSG00000058022 ENSMUST00000221691 Adtrp protein_coding Interval_127094 chr5 100245827 100246686 + 0 NA intron (ENSMUSG00000085915.1, intron 3 of 4) unprocessed_pseudogene-intron (ENSMUSG00000085915.1, intron 3 of 4) 35548 ENSMUSG00000100157.6 ENSMUSG00000100157 ENSMUST00000188902 2310034O05Rik lincRNA Interval_77228 chr17 87473625 87474657 + 0 NA promoter-TSS (ENSMUSG00000117486.1) lincRNA-promoter-TSS (ENSMUSG00000117486.1) -399 ENSMUSG00000117486.1 ENSMUSG00000117486 ENSMUST00000234254 Gm30938 lincRNA Interval_88819 chr2 11436239 11436515 + 0 NA Intergenic Intergenic 16153 ENSMUSG00000082314.2 ENSMUSG00000082314 ENSMUST00000117854 Gm13296 processed_pseudogene Interval_79444 chr18 31916624 31916840 + 0 NA Intergenic Intergenic -4908 ENSMUSG00000044982.7 ENSMUSG00000044982 ENSMUST00000054984 Sft2d3 protein_coding Interval_147905 chr7 75397351 75397950 + 0 NA Intergenic Intergenic 23485 ENSMUSG00000108590.1 ENSMUSG00000108590 ENSMUST00000206460 Gm44962 processed_pseudogene Interval_109532 chr3 144164754 144165675 + 0 NA Intergenic Intergenic -29460 ENSMUSG00000106367.1 ENSMUSG00000106367 ENSMUST00000198202 Gm34078 lincRNA Interval_51264 chr14 25616057 25616520 + 0 NA intron (ENSMUSG00000007817.15, intron 1 of 4) protein_coding-intron (ENSMUSG00000007817.15, intron 6 of 23) -77906 ENSMUSG00000021868.7 ENSMUSG00000021868 ENSMUST00000223872 Ppif protein_coding Interval_63400 chr15 100822105 100822344 + 0 NA exon (ENSMUSG00000023032.12, exon 25 of 25) protein_coding-exon (ENSMUSG00000023032.12, exon 25 of 25) 10167 ENSMUSG00000115912.1 ENSMUSG00000115912 ENSMUST00000230694 Gm35569 lincRNA Interval_9115 chr1 153708403 153708790 + 0 NA Intergenic Intergenic -6058 ENSMUSG00000102404.1 ENSMUSG00000102404 ENSMUST00000193511 5530400K19Rik TEC Interval_173337 chrX 81070157 81071506 + 0 NA exon (ENSMUSG00000025666.16, exon 1 of 3) protein_coding-exon (ENSMUSG00000025666.16, exon 1 of 3) 126 ENSMUSG00000025666.16 ENSMUSG00000025666 ENSMUST00000026760 Tmem47 protein_coding Interval_53477 chr14 57745363 57746669 + 0 NA promoter-TSS (ENSMUSG00000021959.16) protein_coding-promoter-TSS (ENSMUSG00000021959.16) 87 ENSMUSG00000114942.1 ENSMUSG00000114942 ENSMUST00000174694 Gm49361 protein_coding Interval_112275 chr4 39690120 39690858 + 0 NA Intergenic Intergenic -77129 ENSMUSG00000082302.1 ENSMUSG00000082302 ENSMUST00000117439 Gm12385 processed_pseudogene Interval_81941 chr18 66077895 66078780 + 0 NA intron (ENSMUSG00000046318.16, intron 4 of 9) protein_coding-intron (ENSMUSG00000046318.16, intron 5 of 11) 41510 ENSMUSG00000117907.1 ENSMUSG00000117907 ENSMUST00000235539 Gm50142 lincRNA Interval_805 chr1 11501143 11502250 + 0 NA intron (ENSMUSG00000057715.13, intron 1 of 1) protein_coding-intron (ENSMUSG00000057715.13, intron 1 of 13) -77610 ENSMUSG00000057715.13 ENSMUSG00000057715 ENSMUST00000191437 A830018L16Rik protein_coding Interval_16534 chr10 63416272 63417354 + 0 NA Intergenic Intergenic 3814 ENSMUSG00000112572.1 ENSMUSG00000112572 ENSMUST00000218466 Gm7530 processed_pseudogene Interval_80392 chr18 41474410 41474624 + 0 NA Intergenic Intergenic 3364 ENSMUSG00000118299.1 ENSMUSG00000118299 ENSMUST00000235734 Gm50408 processed_pseudogene Interval_19720 chr10 108294433 108295551 + 0 NA Intergenic Intergenic -37825 ENSMUSG00000035873.8 ENSMUSG00000035873 ENSMUST00000218332 Pawr protein_coding Interval_118560 chr4 132505151 132506466 + 0 NA intron (ENSMUSG00000086997.1, intron 1 of 1) protein_coding-intron (ENSMUSG00000028893.8, intron 1 of 9) 3841 ENSMUSG00000086997.1 ENSMUSG00000086997 ENSMUST00000131733 Gm12981 antisense Interval_71164 chr17 20607167 20607493 + 0 NA Intergenic Intergenic -10907 ENSMUSG00000091259.2 ENSMUSG00000091259 ENSMUST00000233630 Vmn2r110 protein_coding Interval_84630 chr19 14532776 14534259 + 0 NA intron (ENSMUSG00000024642.17, intron 6 of 19) protein_coding-intron (ENSMUSG00000024642.17, intron 6 of 19) 62022 ENSMUSG00000024642.17 ENSMUSG00000024642 ENSMUST00000235975 Tle4 protein_coding Interval_152664 chr7 135889100 135889525 + 0 NA Intergenic Intergenic -3503 ENSMUSG00000110004.1 ENSMUSG00000110004 ENSMUST00000209826 Gm45440 TEC Interval_170278 chr9 106643209 106644068 + 0 NA TTS (ENSMUSG00000101411.1) antisense-TTS (ENSMUSG00000101411.1) 2710 ENSMUSG00000101411.1 ENSMUSG00000101411 ENSMUST00000187786 Gm28111 antisense Interval_94316 chr2 88323396 88323649 + 0 NA exon (ENSMUSG00000083855.6, exon 2 of 2) protein_coding-exon (ENSMUSG00000083855.6, exon 2 of 2) 3693 ENSMUSG00000083855.6 ENSMUSG00000083855 ENSMUST00000214207 Olfr1175 protein_coding Interval_5719 chr1 91210947 91212318 + 0 NA intron (ENSMUSG00000034353.14, intron 2 of 2) protein_coding-intron (ENSMUSG00000034353.14, intron 2 of 2) 31590 ENSMUSG00000034353.14 ENSMUSG00000034353 ENSMUST00000097648 Ramp1 protein_coding Interval_159600 chr8 95741856 95742121 + 0 NA exon (ENSMUSG00000036550.16, exon 31 of 48) protein_coding-exon (ENSMUSG00000036550.16, exon 31 of 48) 4207 ENSMUSG00000065089.1 ENSMUSG00000065089 ENSMUST00000083155 Gm26493 snoRNA Interval_127072 chr5 100072344 100072574 + 0 NA Intergenic Intergenic 10488 ENSMUSG00000029326.13 ENSMUSG00000029326 ENSMUST00000200223 Enoph1 protein_coding Interval_149274 chr7 96878806 96879062 + 0 NA intron (ENSMUSG00000048078.16, intron 27 of 32) protein_coding-intron (ENSMUSG00000048078.16, intron 27 of 32) -15555 ENSMUSG00000089259.1 ENSMUSG00000089259 ENSMUST00000158634 Gm25712 rRNA Interval_131467 chr5 137408363 137408854 + 0 NA TTS (ENSMUSG00000079173.11) protein_coding-TTS (ENSMUSG00000079173.11) -6870 ENSMUSG00000079173.11 ENSMUSG00000079173 ENSMUST00000130056 Zan protein_coding Interval_97666 chr2 142516646 142516971 + 0 NA Intergenic Intergenic -53700 ENSMUSG00000081125.3 ENSMUSG00000081125 ENSMUST00000122220 Rpl26-ps5 processed_pseudogene Interval_130650 chr5 129475279 129476333 + 0 NA Intergenic Intergenic 25195 ENSMUSG00000104873.1 ENSMUSG00000104873 ENSMUST00000199847 Gm40332 TEC Interval_161139 chr8 117731122 117731533 + 0 NA intron (ENSMUSG00000031844.8, intron 1 of 2) protein_coding-intron (ENSMUSG00000031844.8, intron 1 of 4) 10391 ENSMUSG00000031844.8 ENSMUSG00000031844 ENSMUST00000212998 Hsd17b2 protein_coding Interval_173118 chrX 72404919 72405675 + 0 NA Intergenic Intergenic -18439 ENSMUSG00000043453.5 ENSMUSG00000043453 ENSMUST00000088481 Magea10 protein_coding Interval_119715 chr4 139422063 139422298 + 0 NA intron (ENSMUSG00000066036.14, intron 38 of 105) protein_coding-intron (ENSMUSG00000066036.14, intron 38 of 105) 41521 ENSMUSG00000066036.14 ENSMUSG00000066036 ENSMUST00000135534 Ubr4 protein_coding Interval_60432 chr15 73716221 73716988 + 0 NA Intergenic Intergenic -9099 ENSMUSG00000045281.5 ENSMUSG00000045281 ENSMUST00000064166 Gpr20 protein_coding Interval_109419 chr3 142165511 142165782 + 0 NA intron (ENSMUSG00000052430.15, intron 1 of 11) protein_coding-intron (ENSMUSG00000052430.15, intron 1 of 11) 19105 ENSMUSG00000105015.1 ENSMUSG00000105015 ENSMUST00000196903 Gm6059 processed_pseudogene Interval_41188 chr12 111696136 111696774 + 0 NA Intergenic Intergenic -6627 ENSMUSG00000112991.1 ENSMUSG00000112991 ENSMUST00000221152 Gm36635 lincRNA Interval_127975 chr5 110013861 110015239 + 0 NA Intergenic Intergenic 7934 ENSMUSG00000066613.14 ENSMUSG00000066613 ENSMUST00000187241 Zfp932 protein_coding Interval_18820 chr10 91114249 91114902 + 0 NA Intergenic Intergenic 3961 ENSMUSG00000077167.1 ENSMUSG00000077167 ENSMUST00000103979 Gm24119 snoRNA Interval_121772 chr5 7746020 7746301 + 0 NA intron (ENSMUSG00000105068.1, intron 3 of 5) lincRNA-intron (ENSMUSG00000105068.1, intron 3 of 5) -110948 ENSMUSG00000081226.1 ENSMUSG00000081226 ENSMUST00000118633 Gm8802 processed_pseudogene Interval_162211 chr8 125999869 126001999 + 0 NA intron (ENSMUSG00000033998.9, intron 1 of 3) protein_coding-intron (ENSMUSG00000033998.9, intron 1 of 2) 5498 ENSMUSG00000033998.9 ENSMUSG00000033998 ENSMUST00000212831 Kcnk1 protein_coding Interval_41834 chr13 3127775 3128838 + 0 NA Intergenic Intergenic -2847 ENSMUSG00000113920.1 ENSMUSG00000113920 ENSMUST00000220465 Gm18783 processed_pseudogene Interval_167111 chr9 65371449 65372692 + 0 NA TTS (ENSMUSG00000086228.3) protein_coding-TTS (ENSMUSG00000086228.3) 224 ENSMUSG00000086228.3 ENSMUSG00000086228 ENSMUST00000239433 Ubap1l protein_coding Interval_26129 chr11 54646189 54646778 + 0 NA intron (ENSMUSG00000037533.20, intron 6 of 17) protein_coding-intron (ENSMUSG00000037533.20, intron 8 of 16) 12090 ENSMUSG00000093341.2 ENSMUSG00000093341 ENSMUST00000175600 Gm26116 miRNA Interval_156724 chr8 57615435 57615784 + 0 NA intron (ENSMUSG00000031608.13, intron 1 of 5) protein_coding-intron (ENSMUSG00000031608.13, intron 1 of 11) -8453 ENSMUSG00000110405.1 ENSMUSG00000110405 ENSMUST00000211449 Gm45534 TEC Interval_98167 chr2 149176489 149176766 + 0 NA Intergenic Intergenic -80650 ENSMUSG00000086963.1 ENSMUSG00000086963 ENSMUST00000135438 Gm14135 lincRNA Interval_23158 chr11 20224281 20224596 + 0 NA TTS (ENSMUSG00000020149.17) protein_coding-TTS (ENSMUSG00000020149.17) 22836 ENSMUSG00000020149.17 ENSMUSG00000020149 ENSMUST00000152728 Rab1a protein_coding Interval_101225 chr2 179591502 179591742 + 0 NA intron (ENSMUSG00000000305.12, intron 2 of 2) protein_coding-intron (ENSMUSG00000000305.12, intron 2 of 15) 21945 ENSMUSG00000083410.1 ENSMUSG00000083410 ENSMUST00000120800 Gm14300 processed_pseudogene Interval_40383 chr12 104540096 104540479 + 0 NA Intergenic Intergenic 20319 ENSMUSG00000112954.1 ENSMUSG00000112954 ENSMUST00000222329 Gm49732 lincRNA Interval_127878 chr5 108518361 108519461 + 0 NA exon (ENSMUSG00000033615.9, exon 4 of 4) protein_coding-exon (ENSMUSG00000033615.9, exon 4 of 4) 1732 ENSMUSG00000060730.8 ENSMUSG00000060730 ENSMUST00000136334 Gm10086 processed_pseudogene Interval_26160 chr11 54819206 54820834 + 0 NA exon (ENSMUSG00000086789.1, exon 1 of 3) antisense-exon (ENSMUSG00000086789.1, exon 1 of 3) 101 ENSMUSG00000086789.1 ENSMUSG00000086789 ENSMUST00000154044 Lyrm7os antisense Interval_115852 chr4 105238495 105238997 + 0 NA Intergenic Intergenic 81399 ENSMUSG00000028517.8 ENSMUSG00000028517 ENSMUST00000064139 Plpp3 protein_coding Interval_99132 chr2 157392203 157393994 + 0 NA intron (ENSMUSG00000063019.5, intron 2 of 2) protein_coding-intron (ENSMUSG00000063019.5, intron 2 of 2) 25504 ENSMUSG00000063019.5 ENSMUSG00000063019 ENSMUST00000081202 Manbal protein_coding Interval_148535 chr7 82247671 82248268 + 0 NA intron (ENSMUSG00000030638.13, intron 1 of 5) protein_coding-intron (ENSMUSG00000030638.13, intron 1 of 8) 72813 ENSMUSG00000030638.13 ENSMUSG00000030638 ENSMUST00000178526 Sh3gl3 protein_coding Interval_142788 chr6 145713287 145713860 + 0 NA Intergenic Intergenic 32700 ENSMUSG00000085658.1 ENSMUSG00000085658 ENSMUST00000144757 Gm15704 lincRNA Interval_77501 chr17 90369235 90369488 + 0 NA intron (ENSMUSG00000024109.18, intron 3 of 3) protein_coding-intron (ENSMUSG00000024109.18, intron 15 of 20) -85528 ENSMUSG00000073367.5 ENSMUSG00000073367 ENSMUST00000097270 Gm10493 processed_pseudogene Interval_35105 chr12 17338481 17339730 + 0 NA Intergenic Intergenic 9268 ENSMUSG00000114024.1 ENSMUSG00000114024 ENSMUST00000221894 Gm46336 bidirectional_promoter_lncRNA Interval_46931 chr13 73505428 73506191 + 0 NA intron (ENSMUSG00000021608.15, intron 9 of 13) protein_coding-intron (ENSMUSG00000021608.15, intron 9 of 13) -30938 ENSMUSG00000021609.6 ENSMUSG00000021609 ENSMUST00000022100 Slc6a3 protein_coding Interval_132380 chr5 144602005 144602285 + 0 NA Intergenic Intergenic 56243 ENSMUSG00000059991.7 ENSMUSG00000059991 ENSMUST00000071782 Nptx2 protein_coding Interval_8521 chr1 140558414 140559085 + 0 NA intron (ENSMUSG00000052726.16, intron 3 of 4) protein_coding-intron (ENSMUSG00000052726.16, intron 20 of 26) 97655 ENSMUSG00000102368.1 ENSMUSG00000102368 ENSMUST00000193820 4930590L20Rik antisense Interval_168754 chr9 86708796 86709480 + 0 NA Intergenic Intergenic -2866 ENSMUSG00000104120.1 ENSMUSG00000104120 ENSMUST00000195378 Gm37484 TEC Interval_38266 chr12 76798856 76799205 + 0 NA TTS (ENSMUSG00000021062.15) protein_coding-TTS (ENSMUSG00000021062.15) -3533 ENSMUSG00000042808.8 ENSMUSG00000042808 ENSMUST00000220569 Gpx2 protein_coding Interval_57079 chr15 5820737 5821218 + 0 NA Intergenic Intergenic -43329 ENSMUSG00000098565.1 ENSMUSG00000098565 ENSMUST00000185048 Gm27760 miRNA Interval_30937 chr11 97292304 97293290 + 0 NA Intergenic Intergenic -12227 ENSMUSG00000001441.13 ENSMUSG00000001441 ENSMUST00000152546 Npepps protein_coding Interval_15678 chr10 53459516 53460266 + 0 NA Intergenic Intergenic -15073 ENSMUSG00000056219.7 ENSMUSG00000056219 ENSMUST00000168554 Tmem229b-ps processed_pseudogene Interval_63954 chr16 4777757 4778860 + 0 NA intron (ENSMUSG00000086464.2, intron 1 of 1) protein_coding-intron (ENSMUSG00000004071.13, intron 1 of 5) 565 ENSMUSG00000086464.2 ENSMUSG00000086464 ENSMUST00000127697 Gm15835 lincRNA Interval_126540 chr5 89981850 89982051 + 0 NA Intergenic Intergenic -98616 ENSMUSG00000043635.12 ENSMUSG00000043635 ENSMUST00000196507 Adamts3 protein_coding Interval_137742 chr6 81975930 81976876 + 0 NA Intergenic Intergenic -7918 ENSMUSG00000107412.1 ENSMUSG00000107412 ENSMUST00000203799 Gm20383 lincRNA Interval_116760 chr4 117133423 117134488 + 0 NA promoter-TSS (ENSMUSG00000028680.14) protein_coding-promoter-TSS (ENSMUSG00000028680.14) -156 ENSMUSG00000028680.14 ENSMUSG00000028680 ENSMUST00000147730 Plk3 protein_coding Interval_12184 chr1 190682067 190682646 + 0 NA Intergenic Intergenic 88030 ENSMUSG00000103963.1 ENSMUSG00000103963 ENSMUST00000191893 Gm30932 lincRNA Interval_45733 chr13 57476755 57477586 + 0 NA intron (ENSMUSG00000056222.15, intron 7 of 10) protein_coding-intron (ENSMUSG00000056222.15, intron 5 of 9) 200492 ENSMUSG00000114411.1 ENSMUSG00000114411 ENSMUST00000224461 Gm48176 processed_pseudogene Interval_7370 chr1 130624259 130624439 + 0 NA intron (ENSMUSG00000042554.10, intron 1 of 10) protein_coding-intron (ENSMUSG00000042554.10, intron 1 of 11) 5263 ENSMUSG00000042554.10 ENSMUSG00000042554 ENSMUST00000142416 Zp3r protein_coding Interval_121721 chr5 5707058 5708398 + 0 NA Intergenic Intergenic 10870 ENSMUSG00000105996.1 ENSMUSG00000105996 ENSMUST00000197972 Gm43219 TEC Interval_53148 chr14 54714131 54715442 + 0 NA Intergenic Intergenic -2612 ENSMUSG00000052435.7 ENSMUSG00000052435 ENSMUST00000064290 Cebpe protein_coding Interval_88604 chr2 6593638 6594057 + 0 NA intron (ENSMUSG00000002107.18, intron 8 of 13) protein_coding-intron (ENSMUSG00000002107.18, intron 10 of 15) 114157 ENSMUSG00000102599.1 ENSMUSG00000102599 ENSMUST00000194293 Gm38386 TEC Interval_165060 chr9 44204320 44204647 + 0 NA intron (ENSMUSG00000034342.9, intron 1 of 15) protein_coding-intron (ENSMUSG00000034342.9, intron 1 of 14) -23782 ENSMUSG00000110972.1 ENSMUSG00000110972 ENSMUST00000214603 5830462O15Rik TEC Interval_61826 chr15 84445356 84446554 + 0 NA intron (ENSMUSG00000062760.11, intron 1 of 5) protein_coding-intron (ENSMUSG00000062760.11, intron 1 of 4) 1142 ENSMUSG00000062760.11 ENSMUSG00000062760 ENSMUST00000186527 Shisal1 protein_coding Interval_41859 chr13 3587255 3587581 + 0 NA intron (ENSMUSG00000033799.10, intron 11 of 19) protein_coding-intron (ENSMUSG00000033799.10, intron 11 of 19) 23389 ENSMUSG00000033799.10 ENSMUSG00000033799 ENSMUST00000223327 Tasor2 protein_coding Interval_50407 chr14 12573851 12574167 + 0 NA intron (ENSMUSG00000054423.14, intron 6 of 28) protein_coding-intron (ENSMUSG00000054423.14, intron 6 of 28) -44659 ENSMUSG00000114453.1 ENSMUSG00000114453 ENSMUST00000225784 Gm17805 processed_pseudogene Interval_72569 chr17 30718327 30719431 + 0 NA exon (ENSMUSG00000033826.10, exon 35 of 93) protein_coding-exon (ENSMUSG00000033826.10, exon 35 of 93) 48239 ENSMUSG00000033826.10 ENSMUSG00000033826 ENSMUST00000235567 Dnah8 protein_coding Interval_109638 chr3 145625392 145625765 + 0 NA Intergenic Intergenic 24403 ENSMUSG00000028195.4 ENSMUSG00000028195 ENSMUST00000029846 Ccn1 protein_coding Interval_149933 chr7 102823911 102824229 + 0 NA Intergenic Intergenic -5575 ENSMUSG00000109596.1 ENSMUSG00000109596 ENSMUST00000209824 Olfr565-ps1 unprocessed_pseudogene Interval_30669 chr11 95785843 95786257 + 0 NA intron (ENSMUSG00000075595.9, intron 5 of 6) protein_coding-intron (ENSMUSG00000075595.9, intron 5 of 6) 24559 ENSMUSG00000082981.1 ENSMUSG00000082981 ENSMUST00000120170 Polr2k-ps processed_pseudogene Interval_81044 chr18 53273820 53274028 + 0 NA intron (ENSMUSG00000024535.16, intron 1 of 3) protein_coding-intron (ENSMUSG00000024535.16, intron 1 of 7) 28196 ENSMUSG00000024535.16 ENSMUSG00000024535 ENSMUST00000025417 Snx24 protein_coding Interval_103782 chr3 52843951 52844496 + 0 NA Intergenic Intergenic -46438 ENSMUSG00000104109.1 ENSMUSG00000104109 ENSMUST00000194198 Gm30292 lincRNA Interval_141658 chr6 132601798 132602174 + 0 NA TTS (ENSMUSG00000058295.6) protein_coding-TTS (ENSMUSG00000058295.6) 6040 ENSMUSG00000058295.6 ENSMUSG00000058295 ENSMUST00000178961 Prp2 protein_coding Interval_83455 chr18 85711281 85711470 + 0 NA Intergenic Intergenic 5350 ENSMUSG00000117854.1 ENSMUSG00000117854 ENSMUST00000237113 Gm7612 processed_pseudogene Interval_151406 chr7 122119034 122119467 + 0 NA intron (ENSMUSG00000044702.13, intron 6 of 10) protein_coding-intron (ENSMUSG00000044702.13, intron 4 of 9) -11842 ENSMUSG00000089631.2 ENSMUSG00000089631 ENSMUST00000162843 Gm16326 processed_pseudogene Interval_94332 chr2 89404583 89405764 + 0 NA TTS (ENSMUSG00000111517.1) protein_coding-TTS (ENSMUSG00000111517.1) -2810 ENSMUSG00000111302.1 ENSMUSG00000111302 ENSMUST00000215283 AL929555.1 unprocessed_pseudogene Interval_63504 chr15 101507082 101507289 + 0 NA intron (ENSMUSG00000116188.2, intron 1 of 3) processed_pseudogene-intron (ENSMUSG00000116188.2, intron 1 of 3) 1094 ENSMUSG00000116188.2 ENSMUSG00000116188 ENSMUST00000230835 Gm49424 processed_pseudogene Interval_142516 chr6 143016760 143017423 + 0 NA intron (ENSMUSG00000030279.15, intron 23 of 24) protein_coding-intron (ENSMUSG00000030279.15, intron 23 of 24) 27481 ENSMUSG00000107839.1 ENSMUSG00000107839 ENSMUST00000203259 4930434O05Rik lincRNA Interval_71235 chr17 21477604 21479289 + 0 NA Intergenic Intergenic -10552 ENSMUSG00000057409.7 ENSMUSG00000057409 ENSMUST00000076664 Zfp53 protein_coding Interval_79657 chr18 34291689 34292648 + 0 NA intron (ENSMUSG00000005871.15, intron 6 of 13) protein_coding-intron (ENSMUSG00000005871.15, intron 8 of 15) -39008 ENSMUSG00000014504.16 ENSMUSG00000014504 ENSMUST00000142010 Srp19 protein_coding Interval_149314 chr7 97385834 97386292 + 0 NA promoter-TSS (ENSMUSG00000035704.17) protein_coding-promoter-TSS (ENSMUSG00000035704.17) -1159 ENSMUSG00000035704.17 ENSMUSG00000035704 ENSMUST00000137105 Alg8 protein_coding Interval_37087 chr12 57575656 57576673 + 0 NA exon (ENSMUSG00000046782.14, exon 2 of 5) protein_coding-exon (ENSMUSG00000046782.14, exon 2 of 5) 347 ENSMUSG00000046782.14 ENSMUSG00000046782 ENSMUST00000172852 Ttc6 protein_coding Interval_125705 chr5 73379715 73381115 + 0 NA promoter-TSS (ENSMUSG00000107272.1) transcribed_processed_pseudogene-promoter-TSS (ENSMUSG00000107272.1) -10234 ENSMUSG00000107272.1 ENSMUSG00000107272 ENSMUST00000202586 Gm34583 transcribed_processed_pseudogene Interval_147801 chr7 73636686 73636885 + 0 NA exon (ENSMUSG00000108311.1, exon 2 of 2) lincRNA-exon (ENSMUSG00000108311.1, exon 2 of 2) 6168 ENSMUSG00000108311.1 ENSMUSG00000108311 ENSMUST00000206950 Gm44737 lincRNA Interval_7729 chr1 133316764 133317394 + 0 NA intron (ENSMUSG00000103421.1, intron 1 of 3) protein_coding-intron (ENSMUSG00000103421.1, intron 1 of 4) -6887 ENSMUSG00000115958.1 ENSMUSG00000115958 ENSMUST00000195286 Gm28040 protein_coding Interval_84827 chr19 17163255 17164205 + 0 NA intron (ENSMUSG00000039126.10, intron 1 of 8) protein_coding-intron (ENSMUSG00000039126.10, intron 9 of 19) 38083 ENSMUSG00000039126.10 ENSMUSG00000039126 ENSMUST00000224117 Prune2 protein_coding Interval_72684 chr17 31535129 31536361 + 0 NA promoter-TSS (ENSMUSG00000104159.1) TEC-promoter-TSS (ENSMUSG00000104159.1) -285 ENSMUSG00000104159.1 ENSMUSG00000104159 ENSMUST00000193280 Gm38099 TEC Interval_136881 chr6 62601811 62602170 + 0 NA Intergenic Intergenic 19920 ENSMUSG00000108160.1 ENSMUSG00000108160 ENSMUST00000205036 Gm19237 processed_pseudogene Interval_70041 chr17 4945316 4947300 + 0 NA intron (ENSMUSG00000116551.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000116551.1, intron 1 of 1) 506 ENSMUSG00000116551.1 ENSMUSG00000116551 ENSMUST00000232522 Gm41517 lincRNA Interval_48892 chr13 104499559 104499818 + 0 NA Intergenic Intergenic -185243 ENSMUSG00000084860.1 ENSMUSG00000084860 ENSMUST00000131215 2610204G07Rik antisense Interval_81887 chr18 65616058 65616851 + 0 NA intron (ENSMUSG00000042439.13, intron 3 of 3) protein_coding-intron (ENSMUSG00000042439.13, intron 2 of 5) 8472 ENSMUSG00000118234.1 ENSMUSG00000118234 ENSMUST00000183157 Gm50115 antisense Interval_136069 chr6 50435567 50436130 + 0 NA intron (ENSMUSG00000029822.15, intron 1 of 3) protein_coding-intron (ENSMUSG00000029822.15, intron 1 of 21) -83891 ENSMUSG00000029822.15 ENSMUSG00000029822 ENSMUST00000154333 Osbpl3 protein_coding Interval_72635 chr17 31219430 31219971 + 0 NA promoter-TSS (ENSMUSG00000042345.15) protein_coding-promoter-TSS (ENSMUSG00000042345.15) -15783 ENSMUSG00000042345.15 ENSMUSG00000042345 ENSMUST00000237216 Ubash3a protein_coding Interval_69829 chr16 97253060 97253853 + 0 NA Intergenic Intergenic -151813 ENSMUSG00000116686.1 ENSMUSG00000116686 ENSMUST00000232315 Gm49681 processed_pseudogene Interval_76783 chr17 84008173 84009922 + 0 NA intron (ENSMUSG00000117431.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000117431.1, intron 1 of 1) 153 ENSMUSG00000117431.1 ENSMUSG00000117431 ENSMUST00000235072 8430430B14Rik lincRNA Interval_39805 chr12 98612891 98613097 + 0 NA Intergenic Intergenic 13961 ENSMUSG00000089351.1 ENSMUSG00000089351 ENSMUST00000158726 Gm25486 snRNA Interval_153958 chr8 11486193 11486518 + 0 NA Intergenic Intergenic -7645 ENSMUSG00000031504.6 ENSMUSG00000031504 ENSMUST00000033900 Rab20 protein_coding Interval_72600 chr17 30953869 30954813 + 0 NA promoter-TSS (ENSMUSG00000054134.14) protein_coding-promoter-TSS (ENSMUSG00000054134.14) -338 ENSMUSG00000054134.14 ENSMUSG00000054134 ENSMUST00000235827 Umodl1 protein_coding Interval_7431 chr1 131274746 131275528 + 0 NA intron (ENSMUSG00000042349.13, intron 4 of 20) protein_coding-intron (ENSMUSG00000042349.13, intron 5 of 21) -4593 ENSMUSG00000042349.13 ENSMUSG00000042349 ENSMUST00000159195 Ikbke protein_coding Interval_104559 chr3 68059166 68059763 + 0 NA intron (ENSMUSG00000102422.1, intron 4 of 10) protein_coding-intron (ENSMUSG00000102422.1, intron 4 of 10) 167232 ENSMUSG00000102422.1 ENSMUSG00000102422 ENSMUST00000182006 Iqschfp protein_coding Interval_101527 chr3 3977550 3977921 + 0 NA Intergenic Intergenic 38591 ENSMUSG00000103224.1 ENSMUSG00000103224 ENSMUST00000195017 Gm2077 processed_pseudogene Interval_40247 chr12 102729980 102731706 + 0 NA intron (ENSMUSG00000098530.1, intron 1 of 1) protein_coding-intron (ENSMUSG00000098530.1, intron 1 of 1) -3510 ENSMUSG00000096751.3 ENSMUSG00000096751 ENSMUST00000178129 Gm28373 processed_transcript Interval_84480 chr19 11749785 11750248 + 0 NA intron (ENSMUSG00000024682.3, intron 3 of 8) protein_coding-intron (ENSMUSG00000024682.3, intron 3 of 8) 2462 ENSMUSG00000024682.3 ENSMUSG00000024682 ENSMUST00000025585 Cblif protein_coding Interval_56981 chr14 124669787 124670274 + 0 NA intron (ENSMUSG00000025551.13, intron 1 of 4) protein_coding-intron (ENSMUSG00000025551.13, intron 1 of 4) 7097 ENSMUSG00000025551.13 ENSMUSG00000025551 ENSMUST00000026631 Fgf14 protein_coding Interval_1032 chr1 14232097 14232306 + 0 NA promoter-TSS (ENSMUSG00000025932.14) protein_coding-promoter-TSS (ENSMUSG00000025932.14) 23789 ENSMUSG00000102588.1 ENSMUSG00000102588 ENSMUST00000193605 Gm37444 TEC Interval_45401 chr13 54889813 54890263 + 0 NA Intergenic Intergenic 2568 ENSMUSG00000100728.1 ENSMUSG00000100728 ENSMUST00000189848 Gm29431 lincRNA Interval_113114 chr4 48425543 48425847 + 0 NA intron (ENSMUSG00000028344.12, intron 12 of 13) protein_coding-intron (ENSMUSG00000028344.12, intron 14 of 16) 47727 ENSMUSG00000028345.15 ENSMUSG00000028345 ENSMUST00000132911 Tex10 protein_coding Interval_65327 chr16 21581729 21582183 + 0 NA TTS (ENSMUSG00000033653.18) protein_coding-TTS (ENSMUSG00000033653.18) 48844 ENSMUSG00000033653.18 ENSMUSG00000033653 ENSMUST00000127903 Vps8 protein_coding Interval_122498 chr5 23453771 23454272 + 0 NA intron (ENSMUSG00000029004.15, intron 2 of 12) protein_coding-intron (ENSMUSG00000029004.15, intron 2 of 25) -20712 ENSMUSG00000073147.3 ENSMUSG00000073147 ENSMUST00000189045 5031425E22Rik lincRNA Interval_25265 chr11 45968217 45969489 + 0 NA Intergenic Intergenic -11457 ENSMUSG00000040489.5 ENSMUSG00000040489 ENSMUST00000049038 Sox30 protein_coding Interval_30882 chr11 97045968 97046188 + 0 NA intron (ENSMUSG00000001445.10, intron 2 of 4) protein_coding-intron (ENSMUSG00000001445.10, intron 2 of 4) 4483 ENSMUSG00000001445.10 ENSMUSG00000001445 ENSMUST00000054252 Mrpl10 protein_coding Interval_171843 chr9 121690195 121691117 + 0 NA promoter-TSS (ENSMUSG00000061536.13) protein_coding-promoter-TSS (ENSMUSG00000061536.13) 2386 ENSMUSG00000061536.13 ENSMUSG00000061536 ENSMUST00000214595 Sec22c protein_coding Interval_118001 chr4 127782703 127783617 + 0 NA Intergenic Intergenic 29013 ENSMUSG00000087510.1 ENSMUSG00000087510 ENSMUST00000141892 1700112K13Rik lincRNA Interval_100698 chr2 171753640 171754439 + 0 NA Intergenic Intergenic 208092 ENSMUSG00000086823.7 ENSMUSG00000086823 ENSMUST00000125465 1700028P15Rik processed_transcript Interval_96339 chr2 121761153 121761535 + 0 NA intron (ENSMUSG00000027238.17, intron 1 of 7) protein_coding-intron (ENSMUSG00000027238.17, intron 1 of 13) 42814 ENSMUSG00000084244.1 ENSMUSG00000084244 ENSMUST00000118165 Gm14020 processed_pseudogene Interval_2549 chr1 40266264 40267463 + 0 NA exon (ENSMUSG00000026072.12, exon 1 of 11) protein_coding-exon (ENSMUSG00000026072.12, exon 1 of 11) 206 ENSMUSG00000026072.12 ENSMUSG00000026072 ENSMUST00000195402 Il1r1 protein_coding Interval_150624 chr7 112891347 112893084 + 0 NA intron (ENSMUSG00000055320.18, intron 12 of 13) protein_coding-intron (ENSMUSG00000055320.18, intron 12 of 13) -61747 ENSMUSG00000098132.1 ENSMUSG00000098132 ENSMUST00000182858 Rassf10 protein_coding Interval_155037 chr8 25856247 25856511 + 0 NA intron (ENSMUSG00000031576.16, intron 2 of 26) protein_coding-intron (ENSMUSG00000031576.16, intron 2 of 26) -6057 ENSMUSG00000031576.16 ENSMUSG00000031576 ENSMUST00000126226 Kcnu1 protein_coding Interval_81065 chr18 53486943 53487606 + 0 NA intron (ENSMUSG00000069378.14, intron 2 of 6) protein_coding-intron (ENSMUSG00000069378.14, intron 2 of 6) 23691 ENSMUSG00000069378.14 ENSMUSG00000069378 ENSMUST00000115398 Prdm6 protein_coding Interval_86311 chr19 38588801 38589085 + 0 NA intron (ENSMUSG00000024998.17, intron 1 of 2) protein_coding-intron (ENSMUSG00000024998.17, intron 1 of 31) 115381 ENSMUSG00000117935.1 ENSMUSG00000117935 ENSMUST00000237606 Gm8717 processed_pseudogene Interval_128505 chr5 113694802 113695059 + 0 NA intron (ENSMUSG00000042184.11, intron 2 of 2) protein_coding-intron (ENSMUSG00000042184.11, intron 2 of 2) 29842 ENSMUSG00000042184.11 ENSMUSG00000042184 ENSMUST00000047891 1700069L16Rik protein_coding Interval_82041 chr18 67318072 67318765 + 0 NA exon (ENSMUSG00000024525.7, exon 8 of 8) protein_coding-exon (ENSMUSG00000024525.7, exon 8 of 8) 9829 ENSMUSG00000024525.7 ENSMUSG00000024525 ENSMUST00000237149 Impa2 protein_coding Interval_156280 chr8 46913978 46914316 + 0 NA Intergenic Intergenic 34652 ENSMUSG00000109759.1 ENSMUSG00000109759 ENSMUST00000210613 1700011L03Rik lincRNA Interval_16052 chr10 60351681 60352485 + 0 NA intron (ENSMUSG00000020101.14, intron 1 of 6) protein_coding-intron (ENSMUSG00000020101.14, intron 1 of 6) 5071 ENSMUSG00000020101.14 ENSMUSG00000020101 ENSMUST00000105459 Vsir protein_coding Interval_166680 chr9 61884545 61884964 + 0 NA Intergenic Intergenic 29788 ENSMUSG00000007892.8 ENSMUSG00000007892 ENSMUST00000008036 Rplp1 protein_coding Interval_128529 chr5 113858757 113859216 + 0 NA promoter-TSS (ENSMUSG00000004530.12) protein_coding-promoter-TSS (ENSMUSG00000004530.12) -1175 ENSMUSG00000106623.1 ENSMUSG00000106623 ENSMUST00000198299 Gm43335 TEC Interval_117044 chr4 119201726 119202733 + 0 NA TTS (ENSMUSG00000028643.11) protein_coding-TTS (ENSMUSG00000028643.11) 6321 ENSMUSG00000028643.11 ENSMUSG00000028643 ENSMUST00000210595 Svbp protein_coding Interval_104217 chr3 60812137 60812503 + 0 NA Intergenic Intergenic 23959 ENSMUSG00000103587.1 ENSMUSG00000103587 ENSMUST00000194030 Gm38326 lincRNA Interval_97097 chr2 131204137 131205078 + 0 NA Intergenic Intergenic -5790 ENSMUSG00000068264.11 ENSMUSG00000068264 ENSMUST00000110206 Ap5s1 protein_coding Interval_167444 chr9 69390735 69390985 + 0 NA Intergenic Intergenic -7788 ENSMUSG00000032235.15 ENSMUSG00000032235 ENSMUST00000147558 Ice2 protein_coding Interval_144355 chr7 24650675 24651155 + 0 NA Intergenic Intergenic -10379 ENSMUSG00000108470.1 ENSMUSG00000108470 ENSMUST00000206756 Gm4598 lincRNA Interval_21192 chr10 127134635 127134854 + 0 NA Intergenic Intergenic -1248 ENSMUSG00000112363.1 ENSMUSG00000112363 ENSMUST00000218307 Gm4178 processed_pseudogene Interval_4846 chr1 80207261 80207964 + 0 NA intron (ENSMUSG00000043230.2, intron 3 of 3) protein_coding-intron (ENSMUSG00000043230.2, intron 1 of 1) 10861 ENSMUSG00000043230.2 ENSMUSG00000043230 ENSMUST00000161427 Fam124b protein_coding Interval_162611 chr9 6387733 6388398 + 0 NA Intergenic Intergenic -118219 ENSMUSG00000047619.5 ENSMUSG00000047619 ENSMUST00000051706 Ddi1 protein_coding Interval_3383 chr1 57759010 57759375 + 0 NA Intergenic Intergenic -14970 ENSMUSG00000038305.15 ENSMUSG00000038305 ENSMUST00000164353 Spats2l protein_coding Interval_166651 chr9 61618421 61619522 + 0 NA Intergenic Intergenic 109248 ENSMUSG00000111381.1 ENSMUSG00000111381 ENSMUST00000213400 Gm34424 transcribed_processed_pseudogene Interval_25131 chr11 44412402 44412699 + 0 NA exon (ENSMUSG00000004296.14, exon 7 of 8) protein_coding-exon (ENSMUSG00000004296.14, exon 7 of 8) 12487 ENSMUSG00000004296.14 ENSMUSG00000004296 ENSMUST00000102796 Il12b protein_coding Interval_96178 chr2 120313741 120314665 + 0 NA promoter-TSS (ENSMUSG00000046971.7) protein_coding-promoter-TSS (ENSMUSG00000046971.7) -1826 ENSMUSG00000046971.7 ENSMUSG00000046971 ENSMUST00000054651 Pla2g4f protein_coding Interval_67690 chr16 55973220 55975111 + 0 NA exon (ENSMUSG00000022601.11, exon 1 of 11) protein_coding-exon (ENSMUSG00000022601.11, exon 1 of 11) 452 ENSMUSG00000102101.1 ENSMUSG00000102101 ENSMUST00000186480 Zbtb11os1 antisense Interval_58838 chr15 38501384 38501576 + 0 NA exon (ENSMUSG00000037458.15, exon 3 of 12) protein_coding-exon (ENSMUSG00000037458.15, exon 3 of 12) -7094 ENSMUSG00000037458.15 ENSMUSG00000037458 ENSMUST00000152833 Azin1 protein_coding Interval_68407 chr16 76019138 76019806 + 0 NA intron (ENSMUSG00000022876.18, intron 1 of 2) protein_coding-intron (ENSMUSG00000022876.18, intron 1 of 13) 2809 ENSMUSG00000022876.18 ENSMUSG00000022876 ENSMUST00000228147 Samsn1 protein_coding Interval_134071 chr6 18701415 18701774 + 0 NA Intergenic Intergenic -25698 ENSMUSG00000095722.1 ENSMUSG00000095722 ENSMUST00000180301 Gm23648 snRNA Interval_28693 chr11 77777464 77778276 + 0 NA TTS (ENSMUSG00000000631.20) protein_coding-TTS (ENSMUSG00000000631.20) 9877 ENSMUSG00000069804.2 ENSMUSG00000069804 ENSMUST00000092883 Gm10277 protein_coding Interval_37497 chr12 69366602 69367019 + 0 NA Intergenic Intergenic 3213 ENSMUSG00000113318.1 ENSMUSG00000113318 ENSMUST00000220630 Gm18113 processed_pseudogene Interval_93997 chr2 80593824 80594062 + 0 NA Intergenic Intergenic -8790 ENSMUSG00000083284.1 ENSMUSG00000083284 ENSMUST00000121557 Gm13688 processed_pseudogene Interval_79650 chr18 34247138 34248381 + 0 NA promoter-TSS (ENSMUSG00000005871.15) protein_coding-promoter-TSS (ENSMUSG00000005871.15) 26835 ENSMUSG00000005871.15 ENSMUSG00000005871 ENSMUST00000167136 Apc protein_coding Interval_146154 chr7 44395512 44396043 + 0 NA exon (ENSMUSG00000030731.13, exon 8 of 11) protein_coding-exon (ENSMUSG00000030731.13, exon 8 of 11) 9377 ENSMUSG00000108372.1 ENSMUSG00000108372 ENSMUST00000206723 Gm45124 TEC Interval_173703 chrX 102188815 102189701 + 0 NA promoter-TSS (ENSMUSG00000031320.9) protein_coding-promoter-TSS (ENSMUSG00000031320.9) -2521 ENSMUSG00000031320.9 ENSMUSG00000031320 ENSMUST00000152739 Rps4x protein_coding Interval_138205 chr6 86236455 86236698 + 0 NA intron (ENSMUSG00000029999.14, intron 2 of 5) protein_coding-intron (ENSMUSG00000029999.14, intron 2 of 5) 24982 ENSMUSG00000029999.14 ENSMUSG00000029999 ENSMUST00000194449 Tgfa protein_coding Interval_109298 chr3 138753632 138753835 + 0 NA intron (ENSMUSG00000028152.10, intron 1 of 3) protein_coding-intron (ENSMUSG00000028152.10, intron 1 of 7) 10964 ENSMUSG00000028152.10 ENSMUSG00000028152 ENSMUST00000121826 Tspan5 protein_coding Interval_162603 chr9 6167958 6169249 + 0 NA promoter-TSS (ENSMUSG00000032006.15) protein_coding-promoter-TSS (ENSMUSG00000032006.15) -58 ENSMUSG00000032006.15 ENSMUSG00000032006 ENSMUST00000214892 Pdgfd protein_coding Interval_113469 chr4 55231622 55232145 + 0 NA intron (ENSMUSG00000087614.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000087614.1, intron 1 of 2) -22857 ENSMUSG00000081504.3 ENSMUSG00000081504 ENSMUST00000121282 Gm12508 processed_pseudogene Interval_8951 chr1 152657732 152658165 + 0 NA intron (ENSMUSG00000026482.13, intron 2 of 18) protein_coding-intron (ENSMUSG00000026482.13, intron 2 of 17) 29553 ENSMUSG00000086145.1 ENSMUSG00000086145 ENSMUST00000139309 Gm15479 sense_intronic Interval_135105 chr6 35376525 35376750 + 0 NA Intergenic Intergenic 45791 ENSMUSG00000107341.1 ENSMUSG00000107341 ENSMUST00000201560 1700065J11Rik lincRNA Interval_143571 chr7 12897467 12898255 + 0 NA promoter-TSS (ENSMUSG00000054715.11) protein_coding-promoter-TSS (ENSMUSG00000054715.11) 20 ENSMUSG00000054715.11 ENSMUSG00000054715 ENSMUST00000119989 Zscan22 protein_coding Interval_115867 chr4 105328981 105329402 + 0 NA Intergenic Intergenic 45755 ENSMUSG00000081819.1 ENSMUSG00000081819 ENSMUST00000118507 Gm12722 processed_pseudogene Interval_72318 chr17 29176833 29177211 + 0 NA promoter-TSS (ENSMUSG00000024008.16) protein_coding-promoter-TSS (ENSMUSG00000024008.16) -17517 ENSMUSG00000024008.16 ENSMUSG00000024008 ENSMUST00000126755 Cpne5 protein_coding Interval_69982 chr17 3819783 3819961 + 0 NA Intergenic Intergenic -123611 ENSMUSG00000023802.4 ENSMUSG00000023802 ENSMUST00000115800 Nox3 protein_coding Interval_23249 chr11 20894761 20895925 + 0 NA Intergenic Intergenic 42358 ENSMUSG00000096061.1 ENSMUSG00000096061 ENSMUST00000178821 Gm23681 miRNA Interval_136022 chr6 49855758 49855966 + 0 NA Intergenic Intergenic 2984 ENSMUSG00000107664.1 ENSMUSG00000107664 ENSMUST00000205019 Gm18007 processed_pseudogene Interval_148512 chr7 81973557 81973917 + 0 NA exon (ENSMUSG00000025105.10, exon 4 of 5) protein_coding-exon (ENSMUSG00000025105.10, exon 4 of 5) 8027 ENSMUSG00000089111.1 ENSMUSG00000089111 ENSMUST00000158486 Gm25907 snoRNA Interval_86814 chr19 44042783 44043554 + 0 NA intron (ENSMUSG00000025198.16, intron 8 of 10) protein_coding-intron (ENSMUSG00000025198.16, intron 9 of 11) -13960 ENSMUSG00000025197.9 ENSMUSG00000025197 ENSMUST00000211830 Cyp2c23 protein_coding Interval_21702 chr11 3798414 3798605 + 0 NA intron (ENSMUSG00000020435.17, intron 2 of 2) protein_coding-intron (ENSMUSG00000020435.17, intron 2 of 13) 9617 ENSMUSG00000088352.1 ENSMUSG00000088352 ENSMUST00000157727 Gm24013 snoRNA Interval_65039 chr16 18634078 18634513 + 0 NA Intergenic Intergenic -7824 ENSMUSG00000072214.7 ENSMUSG00000072214 ENSMUST00000231622 Septin5 protein_coding Interval_103429 chr3 41495196 41498002 + 0 NA Intergenic Intergenic -3409 ENSMUSG00000097639.2 ENSMUSG00000097639 ENSMUST00000181833 Platr4 lincRNA Interval_41096 chr12 111142542 111144867 + 0 NA Intergenic Intergenic 40787 ENSMUSG00000083193.1 ENSMUSG00000083193 ENSMUST00000121608 4930595D18Rik protein_coding Interval_140273 chr6 115978391 115979345 + 0 NA intron (ENSMUSG00000030123.15, intron 2 of 35) protein_coding-intron (ENSMUSG00000030123.15, intron 2 of 35) -22030 ENSMUSG00000030123.15 ENSMUSG00000030123 ENSMUST00000131590 Plxnd1 protein_coding Interval_3835 chr1 63430799 63432109 + 0 NA Intergenic Intergenic -39165 ENSMUSG00000025964.15 ENSMUSG00000025964 ENSMUST00000141545 Adam23 protein_coding Interval_135620 chr6 41661526 41662631 + 0 NA intron (ENSMUSG00000036899.10, intron 7 of 13) protein_coding-intron (ENSMUSG00000036899.10, intron 8 of 14) 18577 ENSMUSG00000036899.10 ENSMUSG00000036899 ENSMUST00000193503 Trpv5 protein_coding Interval_78415 chr18 12667277 12667958 + 0 NA intron (ENSMUSG00000024424.15, intron 1 of 13) protein_coding-intron (ENSMUSG00000024424.15, intron 1 of 13) -19198 ENSMUSG00000117573.1 ENSMUSG00000117573 ENSMUST00000234607 Gm41668 antisense Interval_54440 chr14 69779899 69781153 + 0 NA TTS (ENSMUSG00000022074.6) protein_coding-TTS (ENSMUSG00000022074.6) 13041 ENSMUSG00000022074.6 ENSMUSG00000022074 ENSMUST00000224235 Tnfrsf10b protein_coding Interval_152700 chr7 136583903 136584154 + 0 NA Intergenic Intergenic -73181 ENSMUSG00000109894.1 ENSMUSG00000109894 ENSMUST00000210286 Gm5904 processed_pseudogene Interval_33096 chr11 114402402 114403390 + 0 NA Intergenic Intergenic 45767 ENSMUSG00000081548.1 ENSMUSG00000081548 ENSMUST00000122121 Gm11692 processed_pseudogene Interval_121844 chr5 8778111 8778303 + 0 NA intron (ENSMUSG00000097279.1, intron 2 of 2) antisense-intron (ENSMUSG00000097279.1, intron 2 of 2) 20316 ENSMUSG00000097279.1 ENSMUSG00000097279 ENSMUST00000181058 Gm5106 antisense Interval_8789 chr1 151112278 151113577 + 0 NA Intergenic Intergenic 5012 ENSMUSG00000100595.1 ENSMUSG00000100595 ENSMUST00000191430 Gm19087 processed_pseudogene Interval_74614 chr17 53772711 53773253 + 0 NA Intergenic Intergenic -1777 ENSMUSG00000105075.1 ENSMUSG00000105075 ENSMUST00000197823 Mark1-ps2 processed_pseudogene Interval_67423 chr16 48561950 48562930 + 0 NA TTS (ENSMUSG00000022652.7) protein_coding-TTS (ENSMUSG00000022652.7) 82808 ENSMUSG00000022652.7 ENSMUSG00000022652 ENSMUST00000232195 Morc1 protein_coding Interval_46675 chr13 68605513 68606390 + 0 NA intron (ENSMUSG00000021534.8, intron 1 of 3) protein_coding-intron (ENSMUSG00000021534.8, intron 1 of 2) 8512 ENSMUSG00000021534.8 ENSMUSG00000021534 ENSMUST00000222604 1700001L19Rik protein_coding Interval_101542 chr3 4765120 4765396 + 0 NA promoter-TSS (ENSMUSG00000103306.1) processed_pseudogene-promoter-TSS (ENSMUSG00000103306.1) -840 ENSMUSG00000103306.1 ENSMUSG00000103306 ENSMUST00000194754 Gm37801 processed_pseudogene Interval_118835 chr4 133950452 133950827 + 0 NA Intergenic Intergenic 17252 ENSMUSG00000003038.15 ENSMUSG00000003038 ENSMUST00000136859 Hmgn2 protein_coding Interval_133234 chr5 150743468 150743663 + 0 NA intron (ENSMUSG00000034021.15, intron 9 of 34) protein_coding-intron (ENSMUSG00000034021.15, intron 9 of 34) -8528 ENSMUSG00000107048.1 ENSMUSG00000107048 ENSMUST00000200678 Gm43807 sense_intronic Interval_115789 chr4 104344450 104345394 + 0 NA intron (ENSMUSG00000028519.16, intron 3 of 9) protein_coding-intron (ENSMUSG00000028519.16, intron 3 of 9) -260374 ENSMUSG00000028519.16 ENSMUSG00000028519 ENSMUST00000149672 Dab1 protein_coding Interval_81452 chr18 60841256 60841832 + 0 NA intron (ENSMUSG00000024613.16, intron 3 of 4) protein_coding-intron (ENSMUSG00000024613.16, intron 3 of 22) 6902 ENSMUSG00000024613.16 ENSMUSG00000024613 ENSMUST00000177343 Tcof1 protein_coding Interval_103700 chr3 51708651 51709585 + 0 NA intron (ENSMUSG00000061143.15, intron 2 of 4) protein_coding-intron (ENSMUSG00000061143.15, intron 1 of 3) 15402 ENSMUSG00000074603.3 ENSMUSG00000074603 ENSMUST00000099104 Gm10729 TEC Interval_123005 chr5 28361978 28362315 + 0 NA exon (ENSMUSG00000048271.14, exon 9 of 19) protein_coding-exon (ENSMUSG00000048271.14, exon 9 of 19) -31909 ENSMUSG00000048271.14 ENSMUSG00000048271 ENSMUST00000133313 Rbm33 protein_coding Interval_174013 chrX 129667109 129667501 + 0 NA Intergenic Intergenic -60849 ENSMUSG00000081874.1 ENSMUSG00000081874 ENSMUST00000121551 Gm14983 processed_pseudogene Interval_41623 chr12 117107189 117107449 + 0 NA intron (ENSMUSG00000056553.14, intron 13 of 13) protein_coding-intron (ENSMUSG00000056553.14, intron 12 of 22) 43896 ENSMUSG00000099907.1 ENSMUSG00000099907 ENSMUST00000186114 Gm10421 processed_transcript Interval_71274 chr17 21815389 21816711 + 0 NA TTS (ENSMUSG00000069743.5) protein_coding-TTS (ENSMUSG00000069743.5) 7864 ENSMUSG00000047189.3 ENSMUSG00000047189 ENSMUST00000050900 Gm9818 pseudogene Interval_9939 chr1 164262712 164263058 + 0 NA intron (ENSMUSG00000040918.12, intron 4 of 4) protein_coding-intron (ENSMUSG00000040918.12, intron 5 of 5) -12700 ENSMUSG00000026578.6 ENSMUSG00000026578 ENSMUST00000027867 Ccdc181 protein_coding Interval_143583 chr7 12965421 12966402 + 0 NA promoter-TSS (ENSMUSG00000004500.9) protein_coding-promoter-TSS (ENSMUSG00000004500.9) -192 ENSMUSG00000004500.9 ENSMUSG00000004500 ENSMUST00000210619 Zfp324 protein_coding Interval_101217 chr2 179552507 179552719 + 0 NA intron (ENSMUSG00000000305.12, intron 2 of 2) protein_coding-intron (ENSMUSG00000000305.12, intron 2 of 15) 60954 ENSMUSG00000083410.1 ENSMUSG00000083410 ENSMUST00000120800 Gm14300 processed_pseudogene Interval_143821 chr7 16493199 16493988 + 0 NA TTS (ENSMUSG00000058230.12) protein_coding-TTS (ENSMUSG00000058230.12) -5139 ENSMUSG00000099423.1 ENSMUSG00000099423 ENSMUST00000189720 Gm17826 processed_pseudogene Interval_6712 chr1 118941038 118941688 + 0 NA intron (ENSMUSG00000048402.14, intron 2 of 6) protein_coding-intron (ENSMUSG00000048402.14, intron 2 of 13) -12857 ENSMUSG00000098273.1 ENSMUSG00000098273 ENSMUST00000183982 Mir6346 miRNA Interval_81010 chr18 52825729 52825915 + 0 NA exon (ENSMUSG00000118407.1, exon 1 of 1) protein_coding-exon (ENSMUSG00000118407.1, exon 1 of 1) 512 ENSMUSG00000118407.1 ENSMUSG00000118407 ENSMUST00000238707 Gm50457 protein_coding Interval_117217 chr4 120678191 120678400 + 0 NA Intergenic Intergenic 11723 ENSMUSG00000070803.6 ENSMUSG00000070803 ENSMUST00000094814 Cited4 protein_coding Interval_174206 chrX 139610112 139611358 + 0 NA promoter-TSS (ENSMUSG00000031438.11) protein_coding-promoter-TSS (ENSMUSG00000031438.11) -632 ENSMUSG00000031438.11 ENSMUSG00000031438 ENSMUST00000113029 Rnf128 protein_coding Interval_100917 chr2 173326219 173327460 + 0 NA Intergenic Intergenic 50141 ENSMUSG00000087600.1 ENSMUSG00000087600 ENSMUST00000150185 Pmepa1os antisense Interval_73619 chr17 41241374 41241631 + 0 NA Intergenic Intergenic -104495 ENSMUSG00000098030.1 ENSMUSG00000098030 ENSMUST00000182716 Gm6771 processed_pseudogene Interval_91331 chr2 37815635 37816445 + 0 NA TTS (ENSMUSG00000035392.17) protein_coding-TTS (ENSMUSG00000035392.17) 24869 ENSMUSG00000035403.10 ENSMUSG00000035403 ENSMUST00000137693 Crb2 protein_coding Interval_137882 chr6 83132235 83132483 + 0 NA Intergenic Intergenic -7491 ENSMUSG00000030034.12 ENSMUSG00000030034 ENSMUST00000203085 Ino80b protein_coding Interval_43146 chr13 24686678 24688418 + 0 NA promoter-TSS (ENSMUSG00000036006.20) protein_coding-promoter-TSS (ENSMUSG00000036006.20) -53684 ENSMUSG00000085861.1 ENSMUSG00000085861 ENSMUST00000136906 Armh2 protein_coding Interval_146657 chr7 49225564 49225784 + 0 NA intron (ENSMUSG00000052512.17, intron 2 of 39) protein_coding-intron (ENSMUSG00000052512.17, intron 2 of 39) 30133 ENSMUSG00000103834.1 ENSMUSG00000103834 ENSMUST00000195677 Gm37613 TEC Interval_74099 chr17 46569617 46569810 + 0 NA intron (ENSMUSG00000023972.10, intron 2 of 4) protein_coding-intron (ENSMUSG00000023972.10, intron 17 of 19) 3237 ENSMUSG00000023972.10 ENSMUSG00000023972 ENSMUST00000044442 Ptk7 protein_coding Interval_12114 chr1 189841178 189841471 + 0 NA TTS (ENSMUSG00000026604.17) protein_coding-TTS (ENSMUSG00000026604.17) -3719 ENSMUSG00000026604.17 ENSMUSG00000026604 ENSMUST00000148129 Ptpn14 protein_coding Interval_139206 chr6 97193788 97194637 + 0 NA intron (ENSMUSG00000030061.16, intron 6 of 17) protein_coding-intron (ENSMUSG00000030061.16, intron 6 of 17) 3281 ENSMUSG00000030061.16 ENSMUSG00000030061 ENSMUST00000203215 Uba3 protein_coding Interval_135299 chr6 38160100 38160341 + 0 NA intron (ENSMUSG00000063455.16, intron 10 of 19) protein_coding-intron (ENSMUSG00000063455.16, intron 10 of 19) 41837 ENSMUSG00000087924.1 ENSMUSG00000087924 ENSMUST00000157299 Gm23231 snRNA Interval_91610 chr2 44567747 44568408 + 0 NA intron (ENSMUSG00000036890.13, intron 2 of 2) protein_coding-intron (ENSMUSG00000036890.13, intron 7 of 7) 139142 ENSMUSG00000088124.1 ENSMUSG00000088124 ENSMUST00000157499 Gm22867 snRNA Interval_46082 chr13 61241270 61241863 + 0 NA Intergenic Intergenic 13792 ENSMUSG00000057446.3 ENSMUSG00000057446 ENSMUST00000021891 Cts8 protein_coding Interval_128775 chr5 115188984 115189254 + 0 NA intron (ENSMUSG00000029544.16, intron 1 of 5) protein_coding-intron (ENSMUSG00000029544.16, intron 1 of 5) -4975 ENSMUSG00000029544.16 ENSMUSG00000029544 ENSMUST00000201900 Cabp1 protein_coding Interval_147243 chr7 65029892 65030376 + 0 NA intron (ENSMUSG00000030518.17, intron 1 of 3) protein_coding-intron (ENSMUSG00000030518.17, intron 1 of 9) -73558 ENSMUSG00000093212.1 ENSMUSG00000093212 ENSMUST00000175471 Gm25249 miRNA Interval_18649 chr10 88799146 88799865 + 0 NA intron (ENSMUSG00000004356.8, intron 19 of 61) protein_coding-intron (ENSMUSG00000004356.8, intron 19 of 61) 27278 ENSMUSG00000004356.8 ENSMUSG00000004356 ENSMUST00000220439 Utp20 protein_coding Interval_47154 chr13 76589740 76589978 + 0 NA intron (ENSMUSG00000021596.16, intron 1 of 7) protein_coding-intron (ENSMUSG00000021596.16, intron 1 of 20) 14591 ENSMUSG00000096675.1 ENSMUSG00000096675 ENSMUST00000104507 Gm24519 snoRNA Interval_17377 chr10 76201878 76202679 + 0 NA Intergenic Intergenic -3297 ENSMUSG00000112625.1 ENSMUSG00000112625 ENSMUST00000218019 Gm2628 processed_pseudogene Interval_81837 chr18 65175074 65175782 + 0 NA intron (ENSMUSG00000024589.18, intron 14 of 28) protein_coding-intron (ENSMUSG00000024589.18, intron 15 of 29) -68859 ENSMUSG00000118017.1 ENSMUSG00000118017 ENSMUST00000235231 Gm29966 lincRNA Interval_154271 chr8 13949373 13949770 + 0 NA Intergenic Intergenic 22592 ENSMUSG00000038365.8 ENSMUSG00000038365 ENSMUST00000209310 Fbxo25 protein_coding Interval_145148 chr7 30299615 30299895 + 0 NA TTS (ENSMUSG00000013921.15) protein_coding-TTS (ENSMUSG00000013921.15) 8026 ENSMUSG00000013921.15 ENSMUSG00000013921 ENSMUST00000132844 Clip3 protein_coding Interval_17902 chr10 80695249 80696605 + 0 NA intron (ENSMUSG00000003348.10, intron 1 of 3) protein_coding-intron (ENSMUSG00000003348.10, intron 1 of 3) -2191 ENSMUSG00000003348.10 ENSMUSG00000003348 ENSMUST00000218439 Mob3a protein_coding Interval_50995 chr14 21536377 21538140 + 0 NA intron (ENSMUSG00000021767.19, intron 2 of 5) protein_coding-intron (ENSMUSG00000021767.19, intron 2 of 16) 20383 ENSMUSG00000021767.19 ENSMUSG00000021767 ENSMUST00000226589 Kat6b protein_coding Interval_104908 chr3 78944302 78944649 + 0 NA Intergenic Intergenic 22324 ENSMUSG00000037096.6 ENSMUSG00000037096 ENSMUST00000036976 Gm9762 processed_pseudogene Interval_39526 chr12 89301896 89302451 + 0 NA intron (ENSMUSG00000066392.12, intron 5 of 18) protein_coding-intron (ENSMUSG00000066392.12, intron 6 of 19) -3590 ENSMUSG00000098757.1 ENSMUSG00000098757 ENSMUST00000183500 Gm27313 miRNA Interval_14233 chr10 29277805 29278271 + 0 NA Intergenic Intergenic -35243 ENSMUSG00000019883.11 ENSMUSG00000019883 ENSMUST00000161426 Echdc1 protein_coding Interval_26062 chr11 53851584 53852227 + 0 NA intron (ENSMUSG00000081769.9, intron 1 of 4) protein_coding-intron (ENSMUSG00000081769.9, intron 1 of 3) -1857 ENSMUSG00000081769.9 ENSMUSG00000081769 ENSMUST00000121435 Gm12216 protein_coding Interval_53728 chr14 61261708 61262129 + 0 NA Intergenic Intergenic 22870 ENSMUSG00000114920.1 ENSMUSG00000114920 ENSMUST00000225947 Gm19097 processed_pseudogene Interval_24807 chr11 39000044 39000616 + 0 NA Intergenic Intergenic -202053 ENSMUSG00000070249.1 ENSMUSG00000070249 ENSMUST00000093736 Gm23520 snRNA Interval_137584 chr6 73728153 73728322 + 0 NA Intergenic Intergenic -119564 ENSMUSG00000107441.1 ENSMUSG00000107441 ENSMUST00000204638 Gm31747 lincRNA Interval_26706 chr11 59868236 59869130 + 0 NA intron (ENSMUSG00000032615.14, intron 3 of 4) protein_coding-intron (ENSMUSG00000032615.14, intron 3 of 4) 29236 ENSMUSG00000032615.14 ENSMUSG00000032615 ENSMUST00000137695 Nt5m protein_coding Interval_116744 chr4 117039288 117039676 + 0 NA intron (ENSMUSG00000028683.14, intron 3 of 11) protein_coding-intron (ENSMUSG00000028683.14, intron 2 of 9) 12271 ENSMUSG00000088349.1 ENSMUSG00000088349 ENSMUST00000157724 Gm22335 snRNA Interval_60294 chr15 72549081 72549808 + 0 NA Intergenic Intergenic -3104 ENSMUSG00000036760.7 ENSMUSG00000036760 ENSMUST00000044624 Kcnk9 protein_coding Interval_163057 chr9 14869103 14869620 + 0 NA exon (ENSMUSG00000031932.14, exon 4 of 4) protein_coding-exon (ENSMUSG00000031932.14, exon 4 of 4) 4021 ENSMUSG00000031932.14 ENSMUSG00000031932 ENSMUST00000133278 Gpr83 protein_coding Interval_84785 chr19 16635986 16636153 + 0 NA intron (ENSMUSG00000046230.11, intron 3 of 4) protein_coding-intron (ENSMUSG00000046230.11, intron 67 of 71) 4549 ENSMUSG00000046230.11 ENSMUSG00000046230 ENSMUST00000225764 Vps13a protein_coding Interval_146520 chr7 46578933 46579647 + 0 NA intron (ENSMUSG00000030839.12, intron 9 of 11) protein_coding-intron (ENSMUSG00000030839.12, intron 9 of 10) -17565 ENSMUSG00000110272.1 ENSMUSG00000110272 ENSMUST00000210436 Gm45310 TEC Interval_118399 chr4 131131711 131132977 + 0 NA Intergenic Intergenic -106933 ENSMUSG00000088041.1 ENSMUSG00000088041 ENSMUST00000157416 Gm25261 snoRNA Interval_92365 chr2 59287211 59288046 + 0 NA intron (ENSMUSG00000026991.20, intron 3 of 3) protein_coding-intron (ENSMUSG00000026991.20, intron 3 of 21) 99843 ENSMUSG00000087455.7 ENSMUSG00000087455 ENSMUST00000155111 5330411J11Rik processed_transcript Interval_88826 chr2 11482568 11483643 + 0 NA promoter-TSS (ENSMUSG00000026773.19) protein_coding-promoter-TSS (ENSMUSG00000026773.19) -38601 ENSMUSG00000102329.1 ENSMUSG00000102329 ENSMUST00000192087 Gm10851 antisense Interval_140116 chr6 114387818 114388311 + 0 NA Intergenic Intergenic -15602 ENSMUSG00000053004.9 ENSMUSG00000053004 ENSMUST00000160780 Hrh1 protein_coding Interval_50071 chr14 7803979 7804434 + 0 NA Intergenic Intergenic 2998 ENSMUSG00000049460.7 ENSMUSG00000049460 ENSMUST00000057361 Gm8396 processed_pseudogene Interval_10878 chr1 176596887 176597656 + 0 NA Intergenic Intergenic 45287 ENSMUSG00000103471.1 ENSMUSG00000103471 ENSMUST00000193453 Gm17966 processed_pseudogene Interval_141099 chr6 124966670 124967117 + 0 NA Intergenic Intergenic -1381 ENSMUSG00000030127.15 ENSMUSG00000030127 ENSMUST00000149346 Cops7a protein_coding Interval_44116 chr13 40977454 40978434 + 0 NA intron (ENSMUSG00000086693.1, intron 1 of 4) antisense-intron (ENSMUSG00000086693.1, intron 1 of 4) 23207 ENSMUSG00000086693.1 ENSMUSG00000086693 ENSMUST00000153685 A730081D07Rik antisense Interval_695 chr1 9989667 9990562 + 0 NA intron (ENSMUSG00000025916.10, intron 4 of 5) protein_coding-intron (ENSMUSG00000025916.10, intron 5 of 8) 7727 ENSMUSG00000087199.1 ENSMUSG00000087199 ENSMUST00000134692 Gm15818 antisense Interval_142920 chr6 146970956 146971160 + 0 NA intron (ENSMUSG00000016487.15, intron 3 of 4) protein_coding-intron (ENSMUSG00000016487.15, intron 2 of 26) -5425 ENSMUSG00000016487.15 ENSMUSG00000016487 ENSMUST00000136837 Ppfibp1 protein_coding Interval_31795 chr11 102916196 102916449 + 0 NA TTS (ENSMUSG00000051378.10) protein_coding-TTS (ENSMUSG00000051378.10) 8766 ENSMUSG00000051378.10 ENSMUSG00000051378 ENSMUST00000132502 Kif18b protein_coding Interval_22023 chr11 5837383 5838396 + 0 NA promoter-TSS (ENSMUSG00000020474.11) protein_coding-promoter-TSS (ENSMUSG00000020474.11) -1404 ENSMUSG00000020474.11 ENSMUSG00000020474 ENSMUST00000153987 Polm protein_coding Interval_21511 chr10 129023359 129023615 + 0 NA Intergenic Intergenic 12696 ENSMUSG00000063374.4 ENSMUSG00000063374 ENSMUST00000077460 Olfr763 protein_coding Interval_59283 chr15 50730544 50730746 + 0 NA intron (ENSMUSG00000038679.16, intron 7 of 8) protein_coding-intron (ENSMUSG00000038679.16, intron 5 of 6) 158469 ENSMUSG00000084458.1 ENSMUSG00000084458 ENSMUST00000122509 Mir1907 miRNA Interval_35320 chr12 20584539 20585155 + 0 NA Intergenic Intergenic -21599 ENSMUSG00000113293.1 ENSMUSG00000113293 ENSMUST00000220809 Gm48688 processed_pseudogene Interval_9241 chr1 155408129 155409676 + 0 NA intron (ENSMUSG00000026469.14, intron 1 of 6) protein_coding-intron (ENSMUSG00000026469.14, intron 1 of 14) 92936 ENSMUSG00000093286.1 ENSMUSG00000093286 ENSMUST00000175545 Gm22569 miRNA Interval_158183 chr8 79605977 79606616 + 0 NA Intergenic Intergenic -54788 ENSMUSG00000036990.13 ENSMUSG00000036990 ENSMUST00000172614 Otud4 protein_coding Interval_44469 chr13 45030425 45031470 + 0 NA Intergenic Intergenic -4592 ENSMUSG00000065656.1 ENSMUSG00000065656 ENSMUST00000083722 Gm23104 snRNA Interval_138889 chr6 92988989 92989213 + 0 NA intron (ENSMUSG00000097462.7, intron 2 of 3) antisense-intron (ENSMUSG00000097462.7, intron 1 of 9) 48523 ENSMUSG00000097462.7 ENSMUSG00000097462 ENSMUST00000204609 9530026P05Rik antisense Interval_33330 chr11 115965903 115966341 + 0 NA TTS (ENSMUSG00000020755.9) protein_coding-TTS (ENSMUSG00000020755.9) -8603 ENSMUSG00000020758.15 ENSMUSG00000020758 ENSMUST00000130286 Itgb4 protein_coding Interval_2180 chr1 36893343 36893837 + 0 NA intron (ENSMUSG00000026116.11, intron 1 of 5) protein_coding-intron (ENSMUSG00000026116.11, intron 1 of 40) -21545 ENSMUSG00000103016.1 ENSMUSG00000103016 ENSMUST00000192008 Gm37506 TEC Interval_41595 chr12 116648248 116649150 + 0 NA intron (ENSMUSG00000056553.14, intron 2 of 4) protein_coding-intron (ENSMUSG00000056553.14, intron 2 of 22) 51446 ENSMUSG00000101814.1 ENSMUSG00000101814 ENSMUST00000186869 Gm17807 processed_pseudogene Interval_146105 chr7 43932260 43933016 + 0 NA Intergenic Intergenic -1155 ENSMUSG00000055193.4 ENSMUSG00000055193 ENSMUST00000206955 Klk15 protein_coding Interval_122695 chr5 24705870 24707005 + 0 NA intron (ENSMUSG00000028954.11, intron 10 of 13) protein_coding-intron (ENSMUSG00000028954.11, intron 11 of 14) -1747 ENSMUSG00000097275.1 ENSMUSG00000097275 ENSMUST00000181925 Gm26648 antisense Interval_106537 chr3 97082128 97082410 + 0 NA intron (ENSMUSG00000104766.1, intron 1 of 3) antisense-intron (ENSMUSG00000104766.1, intron 1 of 3) 10516 ENSMUSG00000104766.1 ENSMUSG00000104766 ENSMUST00000197696 4930573H18Rik antisense Interval_58583 chr15 36373749 36375774 + 0 NA promoter-TSS (ENSMUSG00000115278.1) lincRNA-promoter-TSS (ENSMUSG00000115278.1) -288 ENSMUSG00000115278.1 ENSMUSG00000115278 ENSMUST00000226399 Gm34150 lincRNA Interval_14849 chr10 40489613 40489898 + 0 NA Intergenic Intergenic -59137 ENSMUSG00000111251.1 ENSMUSG00000111251 ENSMUST00000214826 Gm18671 processed_pseudogene Interval_45962 chr13 59675203 59676704 + 0 NA promoter-TSS (ENSMUSG00000021556.12) protein_coding-promoter-TSS (ENSMUSG00000021556.12) -181 ENSMUSG00000021556.12 ENSMUSG00000021556 ENSMUST00000224160 Golm1 protein_coding Interval_34533 chr12 4924852 4925070 + 0 NA intron (ENSMUSG00000052812.5, intron 1 of 6) protein_coding-intron (ENSMUSG00000052812.5, intron 1 of 30) -17697 ENSMUSG00000020634.12 ENSMUSG00000020634 ENSMUST00000141360 Ubxn2a protein_coding Interval_63774 chr15 103347050 103347332 + 0 NA intron (ENSMUSG00000000555.8, intron 28 of 30) protein_coding-intron (ENSMUSG00000000555.8, intron 27 of 29) 3334 ENSMUSG00000098419.1 ENSMUSG00000098419 ENSMUST00000183535 Mir6963 miRNA Interval_83999 chr19 6018260 6019328 + 0 NA TTS (ENSMUSG00000097404.2) antisense-TTS (ENSMUSG00000097404.2) -3409 ENSMUSG00000024942.17 ENSMUSG00000024942 ENSMUST00000235138 Capn1 protein_coding Interval_78584 chr18 14903441 14904314 + 0 NA Intergenic Intergenic 20234 ENSMUSG00000117436.1 ENSMUSG00000117436 ENSMUST00000234412 Gm9474 processed_pseudogene Interval_14680 chr10 38932497 38933483 + 0 NA Intergenic Intergenic 4701 ENSMUSG00000111431.1 ENSMUSG00000111431 ENSMUST00000213395 Gm17779 processed_pseudogene Interval_130816 chr5 130913455 130913662 + 0 NA intron (ENSMUSG00000034040.16, intron 6 of 10) protein_coding-intron (ENSMUSG00000034040.16, intron 6 of 10) -14945 ENSMUSG00000107207.1 ENSMUSG00000107207 ENSMUST00000201486 Gm42897 TEC Interval_53412 chr14 57103876 57105416 + 0 NA promoter-TSS (ENSMUSG00000046352.7) protein_coding-promoter-TSS (ENSMUSG00000046352.7) 56 ENSMUSG00000046352.7 ENSMUSG00000046352 ENSMUST00000055698 Gjb2 protein_coding Interval_37302 chr12 64975925 64976166 + 0 NA intron (ENSMUSG00000035614.11, intron 2 of 5) protein_coding-intron (ENSMUSG00000035614.11, intron 1 of 19) -4569 ENSMUSG00000035614.11 ENSMUSG00000035614 ENSMUST00000222425 Togaram1 protein_coding Interval_27384 chr11 67125481 67125816 + 0 NA Intergenic Intergenic -8807 ENSMUSG00000087410.7 ENSMUSG00000087410 ENSMUST00000153497 2310065F04Rik lincRNA Interval_111093 chr4 11965634 11966960 + 0 NA promoter-TSS (ENSMUSG00000049225.14) protein_coding-promoter-TSS (ENSMUSG00000049225.14) -268 ENSMUSG00000085614.1 ENSMUSG00000085614 ENSMUST00000128443 1700123M08Rik processed_transcript Interval_84450 chr19 10996091 10996540 + 0 NA TTS (ENSMUSG00000094584.2) protein_coding-TTS (ENSMUSG00000094584.2) -3134 ENSMUSG00000067571.4 ENSMUSG00000067571 ENSMUST00000144485 Ms4a15 protein_coding Interval_30994 chr11 97625538 97625898 + 0 NA Intergenic Intergenic 3984 ENSMUSG00000043439.5 ENSMUSG00000043439 ENSMUST00000052281 Epop protein_coding Interval_5851 chr1 92592555 92593187 + 0 NA Intergenic Intergenic -1540 ENSMUSG00000062497.3 ENSMUSG00000062497 ENSMUST00000073748 Olfr1411 protein_coding Interval_159011 chr8 88788501 88788704 + 0 NA Intergenic Intergenic -17789 ENSMUSG00000056772.3 ENSMUSG00000056772 ENSMUST00000079841 Rps6-ps2 processed_pseudogene Interval_120171 chr4 143177714 143178282 + 0 NA intron (ENSMUSG00000057637.13, intron 4 of 5) protein_coding-intron (ENSMUSG00000057637.13, intron 4 of 9) 11395 ENSMUSG00000083826.1 ENSMUSG00000083826 ENSMUST00000118638 Gm13039 processed_pseudogene Interval_26134 chr11 54685855 54686566 + 0 NA intron (ENSMUSG00000037533.20, intron 14 of 17) protein_coding-intron (ENSMUSG00000037533.20, intron 16 of 16) -27637 ENSMUSG00000093341.2 ENSMUSG00000093341 ENSMUST00000175600 Gm26116 miRNA Interval_113127 chr4 48517838 48518964 + 0 NA Intergenic Intergenic -22145 ENSMUSG00000039693.11 ENSMUSG00000039693 ENSMUST00000132360 Msantd3 protein_coding Interval_155189 chr8 27278591 27280767 + 0 NA exon (ENSMUSG00000109953.1, exon 1 of 1) TEC-exon (ENSMUSG00000109953.1, exon 1 of 1) 238 ENSMUSG00000109953.1 ENSMUSG00000109953 ENSMUST00000209427 5430430B14Rik TEC Interval_104547 chr3 67593449 67593763 + 0 NA intron (ENSMUSG00000027775.9, intron 6 of 8) protein_coding-intron (ENSMUSG00000027775.9, intron 7 of 15) 8860 ENSMUSG00000027775.9 ENSMUSG00000027775 ENSMUST00000192776 Mfsd1 protein_coding Interval_122374 chr5 21786448 21787181 + 0 NA exon (ENSMUSG00000028932.8, exon 2 of 13) protein_coding-exon (ENSMUSG00000028932.8, exon 2 of 13) 1531 ENSMUSG00000028932.8 ENSMUSG00000028932 ENSMUST00000132720 Psmc2 protein_coding Interval_98618 chr2 153594763 153595594 + 0 NA Intergenic Intergenic 37553 ENSMUSG00000056941.17 ENSMUSG00000056941 ENSMUST00000109782 Commd7 protein_coding Interval_104437 chr3 65650500 65650800 + 0 NA Intergenic Intergenic -8638 ENSMUSG00000098944.1 ENSMUSG00000098944 ENSMUST00000185035 Mir8120 miRNA Interval_160942 chr8 115766178 115766807 + 0 NA Intergenic Intergenic -58698 ENSMUSG00000055435.6 ENSMUSG00000055435 ENSMUST00000109104 Maf protein_coding Interval_19440 chr10 99269375 99269570 + 0 NA intron (ENSMUSG00000112384.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000112544.1, intron 1 of 2) 974 ENSMUSG00000112384.1 ENSMUSG00000112384 ENSMUST00000219528 Gm34921 lincRNA Interval_76865 chr17 84609830 84610335 + 0 NA intron (ENSMUSG00000040852.6, intron 25 of 29) protein_coding-intron (ENSMUSG00000040852.6, intron 25 of 29) -14320 ENSMUSG00000065319.1 ENSMUSG00000065319 ENSMUST00000083385 Gm26066 snRNA Interval_140061 chr6 113714538 113715351 + 0 NA promoter-TSS (ENSMUSG00000097994.1) antisense-promoter-TSS (ENSMUSG00000097994.1) -27 ENSMUSG00000097994.1 ENSMUSG00000097994 ENSMUST00000182250 Gm26982 antisense Interval_113580 chr4 56820084 56820729 + 0 NA intron (ENSMUSG00000038816.14, intron 12 of 18) protein_coding-intron (ENSMUSG00000038816.14, intron 12 of 18) 18061 ENSMUSG00000038827.11 ENSMUSG00000038827 ENSMUST00000147763 Abitram protein_coding Interval_95392 chr2 107920695 107920995 + 0 NA Intergenic Intergenic -34206 ENSMUSG00000077480.1 ENSMUSG00000077480 ENSMUST00000104292 Gm23439 snoRNA Interval_72759 chr17 31984048 31984242 + 0 NA intron (ENSMUSG00000002076.12, intron 3 of 3) protein_coding-intron (ENSMUSG00000002076.12, intron 7 of 7) 33611 ENSMUSG00000091548.2 ENSMUSG00000091548 ENSMUST00000171455 Gm17572 processed_pseudogene Interval_79576 chr18 33843120 33844228 + 0 NA intron (ENSMUSG00000024376.7, intron 13 of 23) protein_coding-intron (ENSMUSG00000024376.7, intron 13 of 23) 48510 ENSMUSG00000092819.1 ENSMUSG00000092819 ENSMUST00000175078 Gm23639 snoRNA Interval_152456 chr7 133097252 133098557 + 0 NA intron (ENSMUSG00000030970.16, intron 1 of 6) protein_coding-intron (ENSMUSG00000030970.16, intron 1 of 10) 22367 ENSMUSG00000110282.1 ENSMUSG00000110282 ENSMUST00000209529 B930086L07Rik TEC Interval_125810 chr5 74387145 74388212 + 0 NA intron (ENSMUSG00000062110.14, intron 5 of 7) protein_coding-intron (ENSMUSG00000062110.14, intron 5 of 8) -17763 ENSMUSG00000107009.1 ENSMUSG00000107009 ENSMUST00000201755 6720475M21Rik TEC Interval_129480 chr5 120471472 120471869 + 0 NA intron (ENSMUSG00000029596.13, intron 1 of 8) protein_coding-intron (ENSMUSG00000029596.13, intron 1 of 8) -4310 ENSMUSG00000029596.13 ENSMUSG00000029596 ENSMUST00000132916 Sdsl protein_coding Interval_30573 chr11 95189828 95190263 + 0 NA Intergenic Intergenic 13232 ENSMUSG00000083548.1 ENSMUSG00000083548 ENSMUST00000117670 Gm11514 processed_pseudogene Interval_81561 chr18 61697194 61698561 + 0 NA exon (ENSMUSG00000024579.7, exon 6 of 6) protein_coding-exon (ENSMUSG00000024579.7, exon 6 of 6) -5493 ENSMUSG00000102778.1 ENSMUSG00000102778 ENSMUST00000191654 Gm38165 antisense Interval_69616 chr16 94627436 94627973 + 0 NA intron (ENSMUSG00000022897.15, intron 2 of 5) protein_coding-intron (ENSMUSG00000022897.15, intron 2 of 11) 7327 ENSMUSG00000081692.1 ENSMUSG00000081692 ENSMUST00000119372 Gm15971 processed_pseudogene Interval_147538 chr7 68164543 68165742 + 0 NA exon (ENSMUSG00000005533.10, exon 3 of 21) protein_coding-exon (ENSMUSG00000005533.10, exon 3 of 21) -46696 ENSMUSG00000005533.10 ENSMUSG00000005533 ENSMUST00000208871 Igf1r protein_coding Interval_154034 chr8 12103105 12103517 + 0 NA Intergenic Intergenic 154972 ENSMUSG00000109995.1 ENSMUSG00000109995 ENSMUST00000209977 B020031H02Rik lincRNA Interval_140107 chr6 114266210 114266913 + 0 NA Intergenic Intergenic -16229 ENSMUSG00000030310.10 ENSMUSG00000030310 ENSMUST00000204540 Slc6a1 protein_coding Interval_88768 chr2 10424628 10425870 + 0 NA intron (ENSMUSG00000061186.15, intron 6 of 22) protein_coding-intron (ENSMUSG00000061186.15, intron 5 of 22) -40038 ENSMUSG00000080500.1 ENSMUSG00000080500 ENSMUST00000116850 Gm22072 miRNA Interval_77360 chr17 88215188 88215443 + 0 NA Intergenic Intergenic 46828 ENSMUSG00000117369.1 ENSMUSG00000117369 ENSMUST00000233989 Gm31499 lincRNA Interval_51822 chr14 32507212 32507466 + 0 NA Intergenic Intergenic -41382 ENSMUSG00000021919.8 ENSMUSG00000021919 ENSMUST00000228511 Chat protein_coding Interval_147726 chr7 73048317 73049353 + 0 NA Intergenic Intergenic -40588 ENSMUSG00000108329.1 ENSMUSG00000108329 ENSMUST00000205307 Gm44725 lincRNA Interval_157212 chr8 67972298 67972714 + 0 NA intron (ENSMUSG00000030465.19, intron 3 of 16) protein_coding-intron (ENSMUSG00000030465.19, intron 1 of 14) 15737 ENSMUSG00000087266.2 ENSMUSG00000087266 ENSMUST00000127631 Gm15991 antisense Interval_97447 chr2 136601119 136601431 + 0 NA Intergenic Intergenic -78686 ENSMUSG00000103066.1 ENSMUSG00000103066 ENSMUST00000193814 Gm36967 TEC Interval_123053 chr5 29272226 29272562 + 0 NA intron (ENSMUSG00000010721.15, intron 8 of 14) protein_coding-intron (ENSMUSG00000010721.15, intron 9 of 16) 7903 ENSMUSG00000105741.1 ENSMUSG00000105741 ENSMUST00000199610 C79130 TEC Interval_55682 chr14 98992093 98993003 + 0 NA Intergenic Intergenic 1770 ENSMUSG00000060377.4 ENSMUSG00000060377 ENSMUST00000081987 Rpl36a-ps1 protein_coding Interval_36099 chr12 35772990 35773220 + 0 NA exon (ENSMUSG00000114167.1, exon 1 of 1) processed_pseudogene-exon (ENSMUSG00000114167.1, exon 1 of 1) 154 ENSMUSG00000114167.1 ENSMUSG00000114167 ENSMUST00000221386 Gm7002 processed_pseudogene Interval_152434 chr7 133008134 133008350 + 0 NA intron (ENSMUSG00000030970.16, intron 2 of 9) protein_coding-intron (ENSMUSG00000030970.16, intron 2 of 9) -24690 ENSMUSG00000085663.1 ENSMUSG00000085663 ENSMUST00000131085 Gm15718 antisense Interval_61683 chr15 83378979 83379273 + 0 NA exon (ENSMUSG00000016664.16, exon 10 of 12) protein_coding-exon (ENSMUSG00000016664.16, exon 10 of 12) 5965 ENSMUSG00000016664.16 ENSMUSG00000016664 ENSMUST00000229337 Pacsin2 protein_coding Interval_77202 chr17 87326516 87327760 + 0 NA intron (ENSMUSG00000036918.16, intron 7 of 18) protein_coding-intron (ENSMUSG00000036918.16, intron 8 of 19) 4914 ENSMUSG00000089701.1 ENSMUSG00000089701 ENSMUST00000161043 Gm15978 antisense Interval_138888 chr6 92987204 92987904 + 0 NA intron (ENSMUSG00000097462.7, intron 2 of 3) antisense-intron (ENSMUSG00000097462.7, intron 1 of 9) 46976 ENSMUSG00000097462.7 ENSMUSG00000097462 ENSMUST00000204609 9530026P05Rik antisense Interval_132784 chr5 147848104 147848899 + 0 NA Intergenic Intergenic 20047 ENSMUSG00000107079.1 ENSMUSG00000107079 ENSMUST00000202304 Gm35648 processed_pseudogene Interval_10979 chr1 177736079 177736692 + 0 NA intron (ENSMUSG00000015962.5, intron 2 of 5) protein_coding-intron (ENSMUSG00000015962.5, intron 2 of 5) 6571 ENSMUSG00000015962.5 ENSMUSG00000015962 ENSMUST00000016106 1700016C15Rik protein_coding Interval_130236 chr5 125133630 125133866 + 0 NA intron (ENSMUSG00000029478.16, intron 1 of 47) protein_coding-intron (ENSMUSG00000029478.16, intron 1 of 46) 46907 ENSMUSG00000106663.1 ENSMUSG00000106663 ENSMUST00000198978 Gm42839 antisense Interval_35974 chr12 33035274 33036411 + 0 NA intron (ENSMUSG00000035860.9, intron 18 of 19) protein_coding-intron (ENSMUSG00000035860.9, intron 18 of 19) 24419 ENSMUSG00000035860.9 ENSMUSG00000035860 ENSMUST00000219065 Cdhr3 protein_coding Interval_167254 chr9 66705480 66706061 + 0 NA Intergenic Intergenic -7959 ENSMUSG00000032373.15 ENSMUSG00000032373 ENSMUST00000134829 Car12 protein_coding Interval_124693 chr5 53339543 53339882 + 0 NA Intergenic Intergenic 6660 ENSMUSG00000077696.1 ENSMUSG00000077696 ENSMUST00000104508 n-R5s172 rRNA Interval_38707 chr12 81402146 81402686 + 0 NA intron (ENSMUSG00000091803.7, intron 3 of 4) protein_coding-intron (ENSMUSG00000091803.7, intron 3 of 3) 2604 ENSMUSG00000049246.5 ENSMUSG00000049246 ENSMUST00000051437 Hspe1-ps2 processed_pseudogene Interval_54796 chr14 75178430 75179710 + 0 NA intron (ENSMUSG00000021998.16, intron 2 of 2) protein_coding-intron (ENSMUSG00000021998.16, intron 3 of 5) 2862 ENSMUSG00000021998.16 ENSMUSG00000021998 ENSMUST00000130510 Lcp1 protein_coding Interval_155783 chr8 37570250 37570451 + 0 NA intron (ENSMUSG00000039539.13, intron 4 of 9) protein_coding-intron (ENSMUSG00000039539.13, intron 4 of 7) -169330 ENSMUSG00000109820.1 ENSMUSG00000109820 ENSMUST00000210980 Gm45654 processed_pseudogene Interval_140776 chr6 121228432 121228721 + 0 NA Intergenic Intergenic -2423 ENSMUSG00000086527.1 ENSMUSG00000086527 ENSMUST00000124853 Gm15856 antisense Interval_166316 chr9 58268551 58269338 + 0 NA Intergenic Intergenic 15756 ENSMUSG00000032333.6 ENSMUSG00000032333 ENSMUST00000216864 Stoml1 protein_coding Interval_143350 chr7 6058781 6059228 + 0 NA intron (ENSMUSG00000034690.13, intron 1 of 9) protein_coding-intron (ENSMUSG00000034690.13, intron 1 of 9) -1503 ENSMUSG00000034690.13 ENSMUSG00000034690 ENSMUST00000207267 Nlrp4c protein_coding Interval_73948 chr17 45626472 45627074 + 0 NA Intergenic Intergenic 6094 ENSMUSG00000065743.1 ENSMUSG00000065743 ENSMUST00000083809 Gm25008 snRNA Interval_134362 chr6 26713116 26713470 + 0 NA Intergenic Intergenic -117124 ENSMUSG00000106742.1 ENSMUSG00000106742 ENSMUST00000201073 Gm42474 processed_pseudogene Interval_130221 chr5 125033603 125034403 + 0 NA exon (ENSMUSG00000029478.16, exon 29 of 46) protein_coding-exon (ENSMUSG00000029478.16, exon 29 of 46) -8942 ENSMUSG00000029478.16 ENSMUSG00000029478 ENSMUST00000199561 Ncor2 protein_coding Interval_10463 chr1 171126037 171126394 + 0 NA TTS (ENSMUSG00000058076.12) protein_coding-TTS (ENSMUSG00000058076.12) 3041 ENSMUSG00000026649.14 ENSMUSG00000026649 ENSMUST00000124157 Cfap126 protein_coding Interval_162639 chr9 7145341 7145615 + 0 NA intron (ENSMUSG00000047193.16, intron 21 of 89) protein_coding-intron (ENSMUSG00000047193.16, intron 21 of 88) -27890 ENSMUSG00000047193.16 ENSMUSG00000047193 ENSMUST00000139115 Dync2h1 protein_coding Interval_157783 chr8 73142582 73143189 + 0 NA intron (ENSMUSG00000004383.18, intron 3 of 15) protein_coding-intron (ENSMUSG00000004383.18, intron 2 of 14) 32373 ENSMUSG00000089447.1 ENSMUSG00000089447 ENSMUST00000158822 Gm22532 snoRNA Interval_118168 chr4 129326921 129327428 + 0 NA exon (ENSMUSG00000057236.10, exon 2 of 2) protein_coding-exon (ENSMUSG00000057236.10, exon 2 of 2) 8075 ENSMUSG00000057236.10 ENSMUSG00000057236 ENSMUST00000135585 Rbbp4 protein_coding Interval_165491 chr9 48647058 48648142 + 0 NA Intergenic Intergenic -50225 ENSMUSG00000032271.13 ENSMUSG00000032271 ENSMUST00000128076 Nnmt protein_coding Interval_157929 chr8 76422443 76422655 + 0 NA Intergenic Intergenic -7509 ENSMUSG00000110485.1 ENSMUSG00000110485 ENSMUST00000212103 Gm45740 lincRNA Interval_94790 chr2 94335764 94336415 + 0 NA intron (ENSMUSG00000027194.16, intron 16 of 23) protein_coding-intron (ENSMUSG00000027194.16, intron 7 of 14) 49009 ENSMUSG00000081476.1 ENSMUSG00000081476 ENSMUST00000117207 Itpa-ps1 processed_pseudogene Interval_123542 chr5 33363016 33363284 + 0 NA TTS (ENSMUSG00000079562.7) protein_coding-TTS (ENSMUSG00000079562.7) 579 ENSMUSG00000079562.7 ENSMUSG00000079562 ENSMUST00000202839 Maea protein_coding Interval_85638 chr19 29251040 29252527 + 0 NA promoter-TSS (ENSMUSG00000024789.13) protein_coding-promoter-TSS (ENSMUSG00000024789.13) -658 ENSMUSG00000024789.13 ENSMUSG00000024789 ENSMUST00000238009 Jak2 protein_coding Interval_78689 chr18 17405378 17405588 + 0 NA Intergenic Intergenic -170030 ENSMUSG00000117460.1 ENSMUSG00000117460 ENSMUST00000234739 4921533I20Rik transcribed_processed_pseudogene Interval_107879 chr3 116525089 116525276 + 0 NA intron (ENSMUSG00000000340.10, intron 2 of 3) protein_coding-intron (ENSMUSG00000000340.10, intron 3 of 10) 3396 ENSMUSG00000082394.1 ENSMUSG00000082394 ENSMUST00000117197 Gm4596 processed_pseudogene Interval_44384 chr13 44501961 44502218 + 0 NA intron (ENSMUSG00000113010.1, intron 1 of 3) lincRNA-intron (ENSMUSG00000113010.1, intron 1 of 3) 2459 ENSMUSG00000113010.1 ENSMUSG00000113010 ENSMUST00000222236 Gm34084 lincRNA Interval_117143 chr4 119969958 119970357 + 0 NA intron (ENSMUSG00000028634.17, intron 1 of 1) protein_coding-intron (ENSMUSG00000028634.17, intron 1 of 8) -62609 ENSMUSG00000028634.17 ENSMUSG00000028634 ENSMUST00000166542 Hivep3 protein_coding Interval_47741 chr13 92146478 92147633 + 0 NA Intergenic Intergenic -15399 ENSMUSG00000021708.17 ENSMUSG00000021708 ENSMUST00000146492 Rasgrf2 protein_coding Interval_51421 chr14 27399338 27399504 + 0 NA intron (ENSMUSG00000021895.10, intron 12 of 13) protein_coding-intron (ENSMUSG00000021895.10, intron 9 of 10) -18571 ENSMUSG00000093034.1 ENSMUSG00000093034 ENSMUST00000175293 Gm23633 miRNA Interval_40612 chr12 106025370 106026072 + 0 NA promoter-TSS (ENSMUSG00000021115.15) protein_coding-promoter-TSS (ENSMUSG00000021115.15) -86 ENSMUSG00000021115.15 ENSMUSG00000021115 ENSMUST00000220629 Vrk1 protein_coding Interval_68616 chr16 81464562 81464769 + 0 NA promoter-TSS (ENSMUSG00000022762.18) protein_coding-promoter-TSS (ENSMUSG00000022762.18) -958 ENSMUSG00000022762.18 ENSMUSG00000022762 ENSMUST00000232550 Ncam2 protein_coding Interval_157441 chr8 70393073 70393309 + 0 NA exon (ENSMUSG00000003575.13, exon 8 of 14) protein_coding-exon (ENSMUSG00000003575.13, exon 8 of 14) 19320 ENSMUSG00000031849.9 ENSMUSG00000031849 ENSMUST00000212488 Comp protein_coding Interval_125119 chr5 64661950 64662764 + 0 NA Intergenic Intergenic -14608 ENSMUSG00000093029.1 ENSMUSG00000093029 ENSMUST00000175288 Gm25306 miRNA Interval_67295 chr16 45684737 45685031 + 0 NA intron (ENSMUSG00000033177.13, intron 1 of 2) protein_coding-intron (ENSMUSG00000033177.13, intron 3 of 17) 1616 ENSMUSG00000033177.13 ENSMUSG00000033177 ENSMUST00000178323 Tmprss7 protein_coding Interval_61242 chr15 80180639 80182048 + 0 NA intron (ENSMUSG00000042428.6, intron 1 of 1) protein_coding-intron (ENSMUSG00000042428.6, intron 1 of 1) 7622 ENSMUSG00000042428.6 ENSMUSG00000042428 ENSMUST00000044970 Mgat3 protein_coding Interval_123512 chr5 33082751 33083071 + 0 NA Intergenic Intergenic 6873 ENSMUSG00000093885.2 ENSMUSG00000093885 ENSMUST00000137013 Rpl35a-ps5 processed_pseudogene Interval_88903 chr2 12422838 12424517 + 0 NA Intergenic Intergenic -1651 ENSMUSG00000083547.2 ENSMUSG00000083547 ENSMUST00000117101 Gm13321 processed_pseudogene Interval_137025 chr6 66534882 66536051 + 0 NA promoter-TSS (ENSMUSG00000029910.14) protein_coding-promoter-TSS (ENSMUSG00000029910.14) -212 ENSMUSG00000029910.14 ENSMUSG00000029910 ENSMUST00000135411 Mad2l1 protein_coding Interval_62729 chr15 96493684 96493885 + 0 NA promoter-TSS (ENSMUSG00000116253.1) lincRNA-promoter-TSS (ENSMUSG00000116253.1) -793 ENSMUSG00000116253.1 ENSMUSG00000116253 ENSMUST00000229198 Gm41392 lincRNA Interval_53856 chr14 62837085 62838294 + 0 NA promoter-TSS (ENSMUSG00000014547.10) protein_coding-promoter-TSS (ENSMUSG00000014547.10) -25 ENSMUSG00000014547.10 ENSMUSG00000014547 ENSMUST00000224948 Wdfy2 protein_coding Interval_32763 chr11 110396278 110396660 + 0 NA Intergenic Intergenic -58753 ENSMUSG00000018800.14 ENSMUSG00000018800 ENSMUST00000148984 Abca5 protein_coding Interval_66019 chr16 30987590 30987798 + 0 NA intron (ENSMUSG00000047434.14, intron 3 of 3) protein_coding-intron (ENSMUSG00000047434.14, intron 3 of 3) -14176 ENSMUSG00000087605.1 ENSMUSG00000087605 ENSMUST00000123905 Gm15742 sense_intronic Interval_100915 chr2 173315331 173315573 + 0 NA Intergenic Intergenic 38754 ENSMUSG00000087600.1 ENSMUSG00000087600 ENSMUST00000150185 Pmepa1os antisense Interval_135658 chr6 42447414 42447648 + 0 NA Intergenic Intergenic -3600 ENSMUSG00000108150.1 ENSMUSG00000108150 ENSMUST00000203913 Gm44470 unprocessed_pseudogene Interval_17178 chr10 74134668 74135537 + 0 NA intron (ENSMUSG00000052613.16, intron 2 of 34) protein_coding-intron (ENSMUSG00000052613.16, intron 3 of 30) 188046 ENSMUSG00000052613.16 ENSMUSG00000052613 ENSMUST00000192370 Pcdh15 protein_coding Interval_105719 chr3 88906357 88906618 + 0 NA promoter-TSS (ENSMUSG00000065236.1) rRNA-promoter-TSS (ENSMUSG00000065236.1) -23 ENSMUSG00000065236.1 ENSMUSG00000065236 ENSMUST00000083302 n-R5s197 rRNA Interval_5133 chr1 85916901 85917745 + 0 NA Intergenic Intergenic -11563 ENSMUSG00000026224.11 ENSMUSG00000026224 ENSMUST00000188949 4933407L21Rik protein_coding Interval_49085 chr13 107837621 107838436 + 0 NA intron (ENSMUSG00000032846.10, intron 1 of 12) protein_coding-intron (ENSMUSG00000032846.10, intron 2 of 14) -8748 ENSMUSG00000093334.2 ENSMUSG00000093334 ENSMUST00000175593 Gm22118 miRNA Interval_87390 chr19 48307942 48308791 + 0 NA intron (ENSMUSG00000063434.6, intron 1 of 26) protein_coding-intron (ENSMUSG00000063434.6, intron 1 of 26) -67721 ENSMUSG00000089004.1 ENSMUSG00000089004 ENSMUST00000158379 Gm23857 rRNA Interval_120503 chr4 149045921 149046198 + 0 NA intron (ENSMUSG00000028975.16, intron 2 of 3) protein_coding-intron (ENSMUSG00000028975.16, intron 2 of 8) -50324 ENSMUSG00000081086.1 ENSMUSG00000081086 ENSMUST00000118516 Gm9506 processed_pseudogene Interval_111570 chr4 23622185 23622710 + 0 NA Intergenic Intergenic 4298 ENSMUSG00000089323.1 ENSMUSG00000089323 ENSMUST00000158698 Gm25978 miRNA Interval_115899 chr4 106039245 106039755 + 0 NA Intergenic Intergenic -59424 ENSMUSG00000082768.1 ENSMUSG00000082768 ENSMUST00000119885 Gm12727 processed_pseudogene Interval_81870 chr18 65541972 65542928 + 0 NA Intergenic Intergenic -3658 ENSMUSG00000118179.1 ENSMUSG00000118179 ENSMUST00000237213 Gm50247 processed_pseudogene Interval_3742 chr1 62706133 62708690 + 0 NA intron (ENSMUSG00000025969.15, intron 1 of 2) protein_coding-intron (ENSMUSG00000025969.15, intron 1 of 15) 4126 ENSMUSG00000025969.15 ENSMUSG00000025969 ENSMUST00000114157 Nrp2 protein_coding Interval_159611 chr8 95785558 95786306 + 0 NA intron (ENSMUSG00000036550.16, intron 2 of 47) protein_coding-intron (ENSMUSG00000036550.16, intron 2 of 47) -7402 ENSMUSG00000110556.1 ENSMUSG00000110556 ENSMUST00000212863 Gm45762 TEC Interval_17991 chr10 81268104 81268477 + 0 NA promoter-TSS (ENSMUSG00000004931.11) protein_coding-promoter-TSS (ENSMUSG00000004931.11) 1330 ENSMUSG00000004931.11 ENSMUSG00000004931 ENSMUST00000218146 Apba3 protein_coding Interval_152256 chr7 130964606 130966601 + 0 NA intron (ENSMUSG00000006205.13, intron 3 of 8) protein_coding-intron (ENSMUSG00000006205.13, intron 3 of 8) 22114 ENSMUSG00000006205.13 ENSMUSG00000006205 ENSMUST00000150905 Htra1 protein_coding Interval_171834 chr9 121605488 121606233 + 0 NA intron (ENSMUSG00000084995.8, intron 3 of 3) protein_coding-intron (ENSMUSG00000032530.14, intron 1 of 5) 3016 ENSMUSG00000084995.8 ENSMUSG00000084995 ENSMUST00000213548 Lyzl4os antisense Interval_157825 chr8 74519785 74520138 + 0 NA Intergenic Intergenic 249714 ENSMUSG00000098378.1 ENSMUSG00000098378 ENSMUST00000183704 Gm27864 miRNA Interval_134394 chr6 28206224 28206416 + 0 NA Intergenic Intergenic 8485 ENSMUSG00000106990.1 ENSMUSG00000106990 ENSMUST00000201159 Gm42547 TEC Interval_171518 chr9 118991573 118992407 + 0 NA intron (ENSMUSG00000047409.13, intron 1 of 5) protein_coding-intron (ENSMUSG00000047409.13, intron 1 of 7) -39806 ENSMUSG00000065513.1 ENSMUSG00000065513 ENSMUST00000083579 Mir26a-1 miRNA Interval_77451 chr17 88906929 88907421 + 0 NA Intergenic Intergenic -50553 ENSMUSG00000117566.1 ENSMUSG00000117566 ENSMUST00000234561 Gm9407 processed_pseudogene Interval_152320 chr7 131727991 131728783 + 0 NA intron (ENSMUSG00000030849.18, intron 2 of 6) protein_coding-intron (ENSMUSG00000030849.18, intron 2 of 6) -53505 ENSMUSG00000109066.1 ENSMUSG00000109066 ENSMUST00000207218 Gm4585 processed_pseudogene Interval_105262 chr3 84324156 84325298 + 0 NA Intergenic Intergenic -17850 ENSMUSG00000027993.16 ENSMUSG00000027993 ENSMUST00000197845 Trim2 protein_coding Interval_152773 chr7 137436372 137438502 + 0 NA promoter-TSS (ENSMUSG00000031068.8) protein_coding-promoter-TSS (ENSMUSG00000031068.8) -228 ENSMUSG00000031068.8 ENSMUSG00000031068 ENSMUST00000211598 Glrx3 protein_coding Interval_131367 chr5 136752855 136753786 + 0 NA TTS (ENSMUSG00000004415.15) protein_coding-TTS (ENSMUSG00000004415.15) 55541 ENSMUSG00000005474.9 ENSMUSG00000005474 ENSMUST00000197849 Myl10 protein_coding Interval_3478 chr1 58711233 58713701 + 0 NA promoter-TSS (ENSMUSG00000026031.15) protein_coding-promoter-TSS (ENSMUSG00000026031.15) -1419 ENSMUSG00000026031.15 ENSMUSG00000026031 ENSMUST00000123032 Cflar protein_coding Interval_95985 chr2 118962083 118962297 + 0 NA Intergenic Intergenic -34878 ENSMUSG00000084802.1 ENSMUSG00000084802 ENSMUST00000130025 Gm14089 antisense Interval_159246 chr8 92175952 92176331 + 0 NA intron (ENSMUSG00000110198.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000110198.1, intron 1 of 1) 3554 ENSMUSG00000110198.1 ENSMUSG00000110198 ENSMUST00000210618 Gm45335 lincRNA Interval_103473 chr3 42111027 42111361 + 0 NA Intergenic Intergenic -52671 ENSMUSG00000102610.1 ENSMUSG00000102610 ENSMUST00000191840 Gm37846 TEC Interval_129075 chr5 117263425 117265256 + 0 NA intron (ENSMUSG00000061288.13, intron 18 of 20) protein_coding-intron (ENSMUSG00000061288.13, intron 17 of 19) 23228 ENSMUSG00000032959.12 ENSMUSG00000032959 ENSMUST00000139913 Pebp1 protein_coding Interval_53437 chr14 57509301 57510009 + 0 NA intron (ENSMUSG00000086486.1, intron 1 of 1) protein_coding-intron (ENSMUSG00000040040.16, intron 24 of 25) 1180 ENSMUSG00000086486.1 ENSMUSG00000086486 ENSMUST00000149702 Ift88os antisense Interval_81331 chr18 58170967 58172429 + 0 NA intron (ENSMUSG00000024598.9, intron 5 of 11) protein_coding-intron (ENSMUSG00000024598.9, intron 5 of 64) 38228 ENSMUSG00000024598.9 ENSMUSG00000024598 ENSMUST00000235779 Fbn2 protein_coding Interval_152438 chr7 133025922 133026221 + 0 NA intron (ENSMUSG00000030970.16, intron 3 of 6) protein_coding-intron (ENSMUSG00000030970.16, intron 2 of 10) -42519 ENSMUSG00000085663.1 ENSMUSG00000085663 ENSMUST00000131085 Gm15718 antisense Interval_13028 chr10 9674347 9675858 + 0 NA exon (ENSMUSG00000060487.7, exon 1 of 2) protein_coding-exon (ENSMUSG00000060487.7, exon 1 of 2) 7426 ENSMUSG00000112680.1 ENSMUSG00000112680 ENSMUST00000218636 Gm48760 processed_pseudogene Interval_54368 chr14 67971759 67972832 + 0 NA Intergenic Intergenic 79035 ENSMUSG00000114621.1 ENSMUSG00000114621 ENSMUST00000223853 Gm31107 lincRNA Interval_73962 chr17 45707581 45708783 + 0 NA Intergenic Intergenic -21277 ENSMUSG00000036026.15 ENSMUSG00000036026 ENSMUST00000131089 Tmem63b protein_coding Interval_81663 chr18 62977595 62978368 + 0 NA promoter-TSS (ENSMUSG00000024581.13) protein_coding-promoter-TSS (ENSMUSG00000024581.13) 134 ENSMUSG00000024581.13 ENSMUSG00000024581 ENSMUST00000236914 Napg protein_coding Interval_126997 chr5 99339682 99339879 + 0 NA intron (ENSMUSG00000089809.9, intron 3 of 3) protein_coding-intron (ENSMUSG00000089809.9, intron 3 of 3) 65685 ENSMUSG00000105686.1 ENSMUSG00000105686 ENSMUST00000196434 Gm35394 lincRNA Interval_45812 chr13 58258206 58258407 + 0 NA exon (ENSMUSG00000021552.7, exon 3 of 3) protein_coding-exon (ENSMUSG00000021552.7, exon 3 of 3) -14355 ENSMUSG00000021552.7 ENSMUSG00000021552 ENSMUST00000223811 Gkap1 protein_coding Interval_79652 chr18 34256155 34256322 + 0 NA intron (ENSMUSG00000005871.15, intron 1 of 1) protein_coding-intron (ENSMUSG00000005871.15, intron 1 of 8) 35314 ENSMUSG00000005871.15 ENSMUSG00000005871 ENSMUST00000167136 Apc protein_coding Interval_68647 chr16 83137214 83137885 + 0 NA Intergenic Intergenic 234184 ENSMUSG00000071475.3 ENSMUSG00000071475 ENSMUST00000095940 Rpl21-ps5 processed_pseudogene Interval_146843 chr7 53053019 53053232 + 0 NA Intergenic Intergenic 126055 ENSMUSG00000070203.1 ENSMUSG00000070203 ENSMUST00000093693 Gm22444 snRNA Interval_109147 chr3 136768843 136769782 + 0 NA intron (ENSMUSG00000028161.17, intron 1 of 12) protein_coding-intron (ENSMUSG00000028161.17, intron 1 of 13) -9352 ENSMUSG00000105545.1 ENSMUSG00000105545 ENSMUST00000198822 4930599N24Rik TEC Interval_9684 chr1 161012967 161013233 + 0 NA exon (ENSMUSG00000043467.19, exon 5 of 5) protein_coding-exon (ENSMUSG00000043467.19, exon 5 of 5) -11255 ENSMUSG00000103680.1 ENSMUSG00000103680 ENSMUST00000194570 Gm37072 TEC Interval_102355 chr3 22120954 22122483 + 0 NA intron (ENSMUSG00000027630.13, intron 1 of 15) protein_coding-intron (ENSMUSG00000027630.13, intron 1 of 15) -40603 ENSMUSG00000103293.1 ENSMUSG00000103293 ENSMUST00000195073 Gm5842 processed_pseudogene Interval_69535 chr16 94086914 94087536 + 0 NA intron (ENSMUSG00000062713.8, intron 1 of 10) protein_coding-intron (ENSMUSG00000062713.8, intron 1 of 10) 2294 ENSMUSG00000062713.8 ENSMUSG00000062713 ENSMUST00000231295 Sim2 protein_coding Interval_131404 chr5 136961463 136962888 + 0 NA promoter-TSS (ENSMUSG00000019054.13) protein_coding-promoter-TSS (ENSMUSG00000019054.13) -670 ENSMUSG00000019054.13 ENSMUSG00000019054 ENSMUST00000152658 Fis1 protein_coding Interval_113623 chr4 57073773 57074600 + 0 NA intron (ENSMUSG00000028434.12, intron 9 of 9) protein_coding-intron (ENSMUSG00000028434.12, intron 11 of 15) -3627 ENSMUSG00000028434.12 ENSMUSG00000028434 ENSMUST00000133859 Epb41l4b protein_coding Interval_254 KZ289068.1 333277 334573 + 0 NA NA NA NA NA Interval_12209 chr1 190848462 190849924 + 0 NA intron (ENSMUSG00000089872.10, intron 3 of 8) protein_coding-intron (ENSMUSG00000089872.10, intron 6 of 14) 50524 ENSMUSG00000089872.10 ENSMUSG00000089872 ENSMUST00000159066 Rps6kc1 protein_coding Interval_113642 chr4 57224653 57225256 + 0 NA intron (ENSMUSG00000038764.14, intron 16 of 25) protein_coding-intron (ENSMUSG00000038764.14, intron 16 of 25) 52883 ENSMUSG00000085967.1 ENSMUSG00000085967 ENSMUST00000152074 Gm12530 antisense Interval_141312 chr6 127114667 127115248 + 0 NA Intergenic Intergenic -5400 ENSMUSG00000038028.9 ENSMUSG00000038028 ENSMUST00000200988 Tigar protein_coding Interval_62036 chr15 86024548 86025173 + 0 NA intron (ENSMUSG00000016028.11, intron 1 of 34) protein_coding-intron (ENSMUSG00000016028.11, intron 1 of 34) -49873 ENSMUSG00000035900.18 ENSMUSG00000035900 ENSMUST00000147286 Gramd4 protein_coding Interval_94718 chr2 93664202 93664452 + 0 NA intron (ENSMUSG00000027198.16, intron 11 of 11) protein_coding-intron (ENSMUSG00000040310.12, intron 1 of 3) 21939 ENSMUSG00000040310.12 ENSMUSG00000040310 ENSMUST00000111254 Alx4 protein_coding Interval_139834 chr6 109957475 109958620 + 0 NA Intergenic Intergenic -75342 ENSMUSG00000107930.1 ENSMUSG00000107930 ENSMUST00000203543 Gm44162 processed_pseudogene Interval_139173 chr6 96846428 96846635 + 0 NA intron (ENSMUSG00000046500.8, intron 4 of 5) protein_coding-intron (ENSMUSG00000046500.8, intron 4 of 5) 213862 ENSMUSG00000046500.8 ENSMUSG00000046500 ENSMUST00000203930 Tafa4 protein_coding Interval_29674 chr11 85956249 85956664 + 0 NA Intergenic Intergenic 5961 ENSMUSG00000081632.1 ENSMUSG00000081632 ENSMUST00000118790 Gm11443 processed_pseudogene Interval_85579 chr19 28776796 28777825 + 0 NA Intergenic Intergenic -13880 ENSMUSG00000090737.1 ENSMUSG00000090737 ENSMUST00000166459 Gm6788 processed_pseudogene Interval_68033 chr16 64353711 64354015 + 0 NA Intergenic Intergenic 248545 ENSMUSG00000068167.6 ENSMUSG00000068167 ENSMUST00000089279 Csnka2ip protein_coding Interval_65955 chr16 30512125 30513607 + 0 NA TTS (ENSMUSG00000022537.18) protein_coding-TTS (ENSMUSG00000022537.18) 30631 ENSMUSG00000022537.18 ENSMUSG00000022537 ENSMUST00000153380 Tmem44 protein_coding Interval_140800 chr6 121428397 121428877 + 0 NA intron (ENSMUSG00000040797.16, intron 2 of 4) protein_coding-intron (ENSMUSG00000040797.16, intron 2 of 13) 45028 ENSMUSG00000040797.16 ENSMUSG00000040797 ENSMUST00000151397 Iqsec3 protein_coding Interval_24105 chr11 30290613 30292169 + 0 NA Intergenic Intergenic -23216 ENSMUSG00000020315.18 ENSMUSG00000020315 ENSMUST00000149117 Sptbn1 protein_coding Interval_15487 chr10 48808699 48808937 + 0 NA Intergenic Intergenic 1663 ENSMUSG00000111704.1 ENSMUSG00000111704 ENSMUST00000214877 Gm47379 processed_pseudogene Interval_17751 chr10 79896593 79896788 + 0 NA intron (ENSMUSG00000013833.15, intron 12 of 14) protein_coding-intron (ENSMUSG00000013833.15, intron 12 of 14) 5837 ENSMUSG00000061780.6 ENSMUSG00000061780 ENSMUST00000061653 Cfd protein_coding Interval_43830 chr13 37452143 37453490 + 0 NA intron (ENSMUSG00000099847.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000099847.1, intron 1 of 1) 392 ENSMUSG00000099847.1 ENSMUSG00000099847 ENSMUST00000187093 Gm29458 lincRNA Interval_90119 chr2 28252589 28253085 + 0 NA Intergenic Intergenic 59845 ENSMUSG00000026833.18 ENSMUSG00000026833 ENSMUST00000028177 Olfm1 protein_coding Interval_88301 chr2 3498608 3499258 + 0 NA promoter-TSS (ENSMUSG00000109865.1) protein_coding-promoter-TSS (ENSMUSG00000109865.1) -6891 ENSMUSG00000109865.1 ENSMUSG00000109865 ENSMUST00000148167 Hspa14 protein_coding Interval_68122 chr16 65454099 65454811 + 0 NA Intergenic Intergenic 22318 ENSMUSG00000095094.1 ENSMUSG00000095094 ENSMUST00000102245 Gm23659 miRNA Interval_65209 chr16 20536928 20538411 + 0 NA promoter-TSS (ENSMUSG00000022841.15) protein_coding-promoter-TSS (ENSMUSG00000022841.15) 2150 ENSMUSG00000022841.15 ENSMUSG00000022841 ENSMUST00000150537 Ap2m1 protein_coding Interval_140208 chr6 115552964 115553924 + 0 NA intron (ENSMUSG00000042389.13, intron 3 of 3) protein_coding-intron (ENSMUSG00000042389.13, intron 3 of 11) -16544 ENSMUSG00000107704.1 ENSMUSG00000107704 ENSMUST00000203752 Gm36355 lincRNA Interval_72245 chr17 28784927 28785515 + 0 NA Intergenic Intergenic 15924 ENSMUSG00000004864.13 ENSMUSG00000004864 ENSMUST00000004986 Mapk13 protein_coding Interval_162334 chr8 127205124 127206096 + 0 NA intron (ENSMUSG00000025812.18, intron 1 of 1) protein_coding-intron (ENSMUSG00000025812.18, intron 2 of 23) 34206 ENSMUSG00000025812.18 ENSMUSG00000025812 ENSMUST00000159940 Pard3 protein_coding Interval_169244 chr9 95774903 95775097 + 0 NA intron (ENSMUSG00000049493.13, intron 9 of 15) protein_coding-intron (ENSMUSG00000049493.13, intron 9 of 15) -24642 ENSMUSG00000032839.13 ENSMUSG00000032839 ENSMUST00000190205 Trpc1 protein_coding Interval_151503 chr7 123130322 123132587 + 0 NA intron (ENSMUSG00000052707.8, intron 2 of 3) protein_coding-intron (ENSMUSG00000052707.8, intron 2 of 23) -40192 ENSMUSG00000052707.8 ENSMUSG00000052707 ENSMUST00000206126 Tnrc6a protein_coding Interval_69782 chr16 96297875 96298735 + 0 NA intron (ENSMUSG00000074892.9, intron 2 of 2) protein_coding-intron (ENSMUSG00000074892.9, intron 1 of 2) 24831 ENSMUSG00000074892.9 ENSMUSG00000074892 ENSMUST00000099497 B3galt5 protein_coding Interval_62889 chr15 97746769 97746964 + 0 NA exon (ENSMUSG00000022469.17, exon 26 of 26) protein_coding-exon (ENSMUSG00000022469.17, exon 26 of 26) -13542 ENSMUSG00000086601.1 ENSMUSG00000086601 ENSMUST00000149373 Rapgef3os1 antisense Interval_148485 chr7 81643584 81644914 + 0 NA intron (ENSMUSG00000025813.14, intron 2 of 6) protein_coding-intron (ENSMUSG00000025813.14, intron 2 of 8) -25479 ENSMUSG00000088057.1 ENSMUSG00000088057 ENSMUST00000157432 Gm26149 snRNA Interval_97095 chr2 131190367 131190958 + 0 NA promoter-TSS (ENSMUSG00000027330.16) protein_coding-promoter-TSS (ENSMUSG00000027330.16) -2212 ENSMUSG00000027330.16 ENSMUSG00000027330 ENSMUST00000145556 Cdc25b protein_coding Interval_142509 chr6 142972651 142973026 + 0 NA intron (ENSMUSG00000108085.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000108085.1, intron 1 of 1) 1086 ENSMUSG00000108085.1 ENSMUSG00000108085 ENSMUST00000205115 A930014E10Rik lincRNA Interval_159846 chr8 104329380 104329799 + 0 NA intron (ENSMUSG00000035785.6, intron 1 of 1) protein_coding-intron (ENSMUSG00000035785.6, intron 2 of 3) -4909 ENSMUSG00000110600.1 ENSMUSG00000110600 ENSMUST00000211839 Gm45878 unprocessed_pseudogene Interval_84072 chr19 7056201 7058524 + 0 NA intron (ENSMUSG00000036278.7, intron 1 of 10) protein_coding-intron (ENSMUSG00000036278.7, intron 1 of 10) 552 ENSMUSG00000036278.7 ENSMUSG00000036278 ENSMUST00000040261 Macrod1 protein_coding Interval_2638 chr1 42784824 42785142 + 0 NA Intergenic Intergenic 34271 ENSMUSG00000099784.1 ENSMUSG00000099784 ENSMUST00000188773 Dalir lincRNA Interval_39091 chr12 84986704 84987289 + 0 NA Intergenic Intergenic 6786 ENSMUSG00000021243.14 ENSMUSG00000021243 ENSMUST00000172241 Fcf1 protein_coding Interval_168402 chr9 80066645 80068086 + 0 NA promoter-TSS (ENSMUSG00000034252.14) protein_coding-promoter-TSS (ENSMUSG00000034252.14) -452 ENSMUSG00000034252.14 ENSMUSG00000034252 ENSMUST00000176563 Senp6 protein_coding Interval_23425 chr11 22563295 22564546 + 0 NA Intergenic Intergenic 51832 ENSMUSG00000049904.7 ENSMUSG00000049904 ENSMUST00000059319 Tmem17 protein_coding Interval_83610 chr18 90551305 90551704 + 0 NA Intergenic Intergenic 20568 ENSMUSG00000117747.1 ENSMUSG00000117747 ENSMUST00000236589 Gm50438 transcribed_processed_pseudogene Interval_94402 chr2 90772549 90772806 + 0 NA intron (ENSMUSG00000008200.15, intron 12 of 16) protein_coding-intron (ENSMUSG00000008200.15, intron 12 of 16) -10050 ENSMUSG00000040812.14 ENSMUSG00000040812 ENSMUST00000149361 Agbl2 protein_coding Interval_21273 chr10 127584722 127585908 + 0 NA intron (ENSMUSG00000040249.15, intron 15 of 88) protein_coding-intron (ENSMUSG00000040249.15, intron 15 of 88) -11233 ENSMUSG00000086499.1 ENSMUSG00000086499 ENSMUST00000124182 Gm16217 antisense Interval_138447 chr6 88275525 88275857 + 0 NA intron (ENSMUSG00000033216.9, intron 6 of 7) protein_coding-intron (ENSMUSG00000033216.9, intron 6 of 6) -52052 ENSMUSG00000047046.8 ENSMUSG00000047046 ENSMUST00000156018 1700031F10Rik antisense Interval_25560 chr11 49769915 49770312 + 0 NA Intergenic Intergenic -1720 ENSMUSG00000092894.1 ENSMUSG00000092894 ENSMUST00000175153 Gm23813 miRNA Interval_9406 chr1 156863848 156864445 + 0 NA intron (ENSMUSG00000026594.14, intron 9 of 19) protein_coding-intron (ENSMUSG00000026594.14, intron 8 of 18) -5287 ENSMUSG00000103303.1 ENSMUSG00000103303 ENSMUST00000194998 Gm37802 TEC Interval_77886 chr18 5027402 5028739 + 0 NA intron (ENSMUSG00000024236.18, intron 1 of 37) protein_coding-intron (ENSMUSG00000024236.18, intron 1 of 37) -7096 ENSMUSG00000024236.18 ENSMUSG00000024236 ENSMUST00000129543 Svil protein_coding Interval_104117 chr3 58730435 58730731 + 0 NA intron (ENSMUSG00000097725.4, intron 2 of 8) lincRNA-intron (ENSMUSG00000097725.4, intron 2 of 8) 33022 ENSMUSG00000105226.1 ENSMUSG00000105226 ENSMUST00000197219 A930028O11Rik TEC Interval_100475 chr2 169300223 169301050 + 0 NA Intergenic Intergenic 65645 ENSMUSG00000085369.1 ENSMUSG00000085369 ENSMUST00000152494 9430093N23Rik lincRNA Interval_19737 chr10 108395004 108396485 + 0 NA intron (ENSMUSG00000035873.8, intron 2 of 4) protein_coding-intron (ENSMUSG00000035873.8, intron 4 of 6) 32079 ENSMUSG00000065653.1 ENSMUSG00000065653 ENSMUST00000083719 Gm23105 snoRNA Interval_162545 chr9 4092239 4092925 + 0 NA Intergenic Intergenic -121340 ENSMUSG00000110691.1 ENSMUSG00000110691 ENSMUST00000211927 Gm5363 processed_pseudogene Interval_51336 chr14 26512182 26512637 + 0 NA intron (ENSMUSG00000021870.17, intron 1 of 22) protein_coding-intron (ENSMUSG00000021870.17, intron 1 of 22) -2145 ENSMUSG00000078128.1 ENSMUSG00000078128 ENSMUST00000104927 Gm2178 processed_pseudogene Interval_125751 chr5 73886748 73887937 + 0 NA Intergenic Intergenic -25554 ENSMUSG00000107027.1 ENSMUSG00000107027 ENSMUST00000202487 1700019F05Rik lincRNA Interval_155085 chr8 26279594 26280180 + 0 NA Intergenic Intergenic 12910 ENSMUSG00000110417.1 ENSMUSG00000110417 ENSMUST00000210102 Gm31727 lincRNA Interval_102298 chr3 21272295 21273104 + 0 NA Intergenic Intergenic -3609 ENSMUSG00000101897.1 ENSMUSG00000101897 ENSMUST00000190301 Gm29137 lincRNA Interval_14578 chr10 36475002 36475197 + 0 NA Intergenic Intergenic -31790 ENSMUSG00000044499.11 ENSMUSG00000044499 ENSMUST00000171521 Hs3st5 protein_coding Interval_32067 chr11 105004559 105004806 + 0 NA intron (ENSMUSG00000040838.10, intron 137 of 187) protein_coding-intron (ENSMUSG00000040838.10, intron 137 of 187) -26475 ENSMUSG00000082767.1 ENSMUSG00000082767 ENSMUST00000120525 Gm11622 processed_pseudogene Interval_158498 chr8 84083857 84085313 + 0 NA TTS (ENSMUSG00000031706.7) protein_coding-TTS (ENSMUSG00000031706.7) -1514 ENSMUSG00000076144.1 ENSMUSG00000076144 ENSMUST00000102190 Mir709 miRNA Interval_80765 chr18 46923040 46923579 + 0 NA intron (ENSMUSG00000073568.2, intron 1 of 4) protein_coding-intron (ENSMUSG00000073568.2, intron 1 of 4) 1494 ENSMUSG00000073568.2 ENSMUSG00000073568 ENSMUST00000097580 Arl14epl protein_coding Interval_28179 chr11 73596478 73596714 + 0 NA Intergenic Intergenic -1998 ENSMUSG00000060335.2 ENSMUSG00000060335 ENSMUST00000072993 Olfr384 protein_coding Interval_9327 chr1 156268107 156269399 + 0 NA intron (ENSMUSG00000060985.15, intron 13 of 17) protein_coding-intron (ENSMUSG00000060985.15, intron 13 of 17) -5225 ENSMUSG00000060985.15 ENSMUSG00000060985 ENSMUST00000141760 Tdrd5 protein_coding Interval_141616 chr6 131366721 131368049 + 0 NA intron (ENSMUSG00000030189.15, intron 5 of 5) protein_coding-intron (ENSMUSG00000030189.15, intron 9 of 9) 10856 ENSMUSG00000030189.15 ENSMUSG00000030189 ENSMUST00000204481 Ybx3 protein_coding Interval_124240 chr5 41887499 41887932 + 0 NA Intergenic Intergenic -3627 ENSMUSG00000098264.1 ENSMUSG00000098264 ENSMUST00000183685 Mir6414 miRNA Interval_80138 chr18 37800555 37801204 + 0 NA intron (ENSMUSG00000102428.1, intron 1 of 3) protein_coding-intron (ENSMUSG00000103088.1, intron 1 of 3) -5485 ENSMUSG00000102918.1 ENSMUSG00000102918 ENSMUST00000192103 Pcdhgc3 protein_coding Interval_75660 chr17 70180006 70180270 + 0 NA intron (ENSMUSG00000003279.17, intron 2 of 13) protein_coding-intron (ENSMUSG00000003279.17, intron 2 of 14) -254307 ENSMUSG00000117078.1 ENSMUSG00000117078 ENSMUST00000232868 Gm4561 processed_pseudogene Interval_99489 chr2 162437885 162438121 + 0 NA intron (ENSMUSG00000053141.16, intron 1 of 29) protein_coding-intron (ENSMUSG00000053141.16, intron 1 of 30) 47190 ENSMUSG00000084919.1 ENSMUSG00000084919 ENSMUST00000151688 Ptprtos antisense Interval_41768 chr12 118883664 118884921 + 0 NA intron (ENSMUSG00000072791.11, intron 23 of 27) protein_coding-intron (ENSMUSG00000072791.11, intron 23 of 27) 6467 ENSMUSG00000072791.11 ENSMUSG00000072791 ENSMUST00000100982 Abcb5 protein_coding Interval_172390 chrX 17319200 17319593 + 0 NA promoter-TSS (ENSMUSG00000025038.7) protein_coding-promoter-TSS (ENSMUSG00000025038.7) -28 ENSMUSG00000025038.7 ENSMUSG00000025038 ENSMUST00000026014 Efhc2 protein_coding Interval_97437 chr2 136294714 136294961 + 0 NA intron (ENSMUSG00000039913.12, intron 1 of 1) protein_coding-intron (ENSMUSG00000039913.12, intron 2 of 10) 93130 ENSMUSG00000039913.12 ENSMUSG00000039913 ENSMUST00000143329 Pak7 protein_coding Interval_64282 chr16 10216331 10217385 + 0 NA intron (ENSMUSG00000039200.16, intron 1 of 5) protein_coding-intron (ENSMUSG00000039200.16, intron 6 of 10) 4052 ENSMUSG00000039200.16 ENSMUSG00000039200 ENSMUST00000230872 Atf7ip2 protein_coding Interval_38336 chr12 77481733 77482007 + 0 NA Intergenic Intergenic 44528 ENSMUSG00000111939.1 ENSMUSG00000111939 ENSMUST00000219567 Gm48177 processed_pseudogene Interval_129472 chr5 120428989 120429242 + 0 NA intron (ENSMUSG00000098649.2, intron 1 of 1) antisense-intron (ENSMUSG00000098649.2, intron 1 of 1) -2584 ENSMUSG00000029595.9 ENSMUSG00000029595 ENSMUST00000031591 Lhx5 protein_coding Interval_86545 chr19 41606244 41607405 + 0 NA intron (ENSMUSG00000025020.11, intron 1 of 2) protein_coding-intron (ENSMUSG00000025020.11, intron 31 of 36) 18173 ENSMUSG00000098286.1 ENSMUSG00000098286 ENSMUST00000183602 Mir8091 miRNA Interval_132320 chr5 144162109 144162346 + 0 NA intron (ENSMUSG00000038970.7, intron 7 of 13) protein_coding-intron (ENSMUSG00000038970.7, intron 7 of 13) -28059 ENSMUSG00000052271.7 ENSMUSG00000052271 ENSMUST00000060747 Bhlha15 protein_coding Interval_114208 chr4 67477086 67477795 + 0 NA Intergenic Intergenic 41492 ENSMUSG00000080815.1 ENSMUSG00000080815 ENSMUST00000117940 Hmgb1-rs18 processed_pseudogene Interval_161053 chr8 117184539 117185404 + 0 NA intron (ENSMUSG00000052557.11, intron 2 of 10) protein_coding-intron (ENSMUSG00000052557.11, intron 2 of 10) 26834 ENSMUSG00000052557.11 ENSMUSG00000052557 ENSMUST00000162997 Gan protein_coding Interval_136182 chr6 51824022 51824298 + 0 NA Intergenic Intergenic 47769 ENSMUSG00000059182.7 ENSMUSG00000059182 ENSMUST00000203313 Skap2 protein_coding Interval_35588 chr12 25092344 25093292 + 0 NA TTS (ENSMUSG00000020644.9) protein_coding-TTS (ENSMUSG00000020644.9) 3269 ENSMUSG00000020644.9 ENSMUSG00000020644 ENSMUST00000222667 Id2 protein_coding Interval_169409 chr9 97025965 97026748 + 0 NA Intergenic Intergenic 10390 ENSMUSG00000085541.1 ENSMUSG00000085541 ENSMUST00000124366 Gm16010 antisense Interval_38798 chr12 82424912 82425578 + 0 NA TTS (ENSMUSG00000042700.16) protein_coding-TTS (ENSMUSG00000042700.16) 71292 ENSMUSG00000094374.2 ENSMUSG00000094374 ENSMUST00000179295 Gm5435 processed_pseudogene Interval_25729 chr11 51176892 51177856 + 0 NA Intergenic Intergenic -1552 ENSMUSG00000081296.1 ENSMUSG00000081296 ENSMUST00000118235 Gm12203 processed_pseudogene Interval_19917 chr10 111192292 111192740 + 0 NA intron (ENSMUSG00000020189.15, intron 1 of 5) protein_coding-intron (ENSMUSG00000020189.15, intron 1 of 22) 12564 ENSMUSG00000112642.1 ENSMUSG00000112642 ENSMUST00000219788 Gm17849 processed_pseudogene Interval_66167 chr16 32087808 32088061 + 0 NA intron (ENSMUSG00000023791.17, intron 3 of 5) protein_coding-intron (ENSMUSG00000023791.17, intron 3 of 5) 11806 ENSMUSG00000023791.17 ENSMUSG00000023791 ENSMUST00000144216 Pigx protein_coding Interval_117357 chr4 123215908 123217232 + 0 NA TTS (ENSMUSG00000054958.6) protein_coding-TTS (ENSMUSG00000054958.6) 15066 ENSMUSG00000054958.6 ENSMUSG00000054958 ENSMUST00000068262 Nt5c1a protein_coding Interval_87949 chr19 57325755 57326417 + 0 NA intron (ENSMUSG00000097785.2, intron 1 of 2) processed_transcript-intron (ENSMUSG00000097785.2, intron 1 of 2) 2484 ENSMUSG00000117670.1 ENSMUSG00000117670 ENSMUST00000235809 Gm50270 lincRNA Interval_56040 chr14 105097506 105098385 + 0 NA Intergenic Intergenic 16731 ENSMUSG00000091509.7 ENSMUSG00000091509 ENSMUST00000164319 Gm17066 processed_transcript Interval_109037 chr3 135332620 135334021 + 0 NA intron (ENSMUSG00000037994.14, intron 8 of 9) protein_coding-intron (ENSMUSG00000037994.14, intron 11 of 12) -15010 ENSMUSG00000050150.16 ENSMUSG00000050150 ENSMUST00000159276 Slc9b1 protein_coding Interval_20580 chr10 119170930 119171147 + 0 NA Intergenic Intergenic -4653 ENSMUSG00000112161.1 ENSMUSG00000112161 ENSMUST00000217700 Gm34045 lincRNA Interval_64743 chr16 14800103 14800876 + 0 NA Intergenic Intergenic 6780 ENSMUSG00000095165.1 ENSMUSG00000095165 ENSMUST00000178877 Gm25547 snRNA Interval_104478 chr3 66292088 66293057 + 0 NA intron (ENSMUSG00000027831.9, intron 1 of 3) protein_coding-intron (ENSMUSG00000027831.9, intron 1 of 13) 4176 ENSMUSG00000027831.9 ENSMUSG00000027831 ENSMUST00000182815 Veph1 protein_coding Interval_45431 chr13 55130040 55131648 + 0 NA TTS (ENSMUSG00000021481.11) protein_coding-TTS (ENSMUSG00000021481.11) 620 ENSMUSG00000021481.11 ENSMUSG00000021481 ENSMUST00000162653 Zfp346 protein_coding Interval_159870 chr8 104508919 104510239 + 0 NA exon (ENSMUSG00000052616.10, exon 1 of 17) protein_coding-exon (ENSMUSG00000052616.10, exon 1 of 17) 331 ENSMUSG00000052616.10 ENSMUSG00000052616 ENSMUST00000162014 Terb1 protein_coding Interval_13659 chr10 20627889 20628120 + 0 NA exon (ENSMUSG00000091730.1, exon 1 of 1) processed_pseudogene-exon (ENSMUSG00000091730.1, exon 1 of 1) 2369 ENSMUSG00000091730.1 ENSMUSG00000091730 ENSMUST00000171194 Gm17230 processed_pseudogene Interval_134768 chr6 31333413 31333645 + 0 NA intron (ENSMUSG00000087380.7, intron 4 of 5) processed_transcript-intron (ENSMUSG00000087380.7, intron 4 of 6) -23214 ENSMUSG00000086931.1 ENSMUSG00000086931 ENSMUST00000156115 Gm14532 lincRNA Interval_6470 chr1 110813245 110813446 + 0 NA Intergenic Intergenic 147481 ENSMUSG00000102788.1 ENSMUSG00000102788 ENSMUST00000194910 Gm38255 TEC Interval_173707 chrX 102219309 102219734 + 0 NA Intergenic Intergenic 11119 ENSMUSG00000081263.1 ENSMUSG00000081263 ENSMUST00000117752 Gm14859 processed_pseudogene Interval_85687 chr19 29672368 29673399 + 0 NA Intergenic Intergenic -25051 ENSMUSG00000024806.4 ENSMUSG00000024806 ENSMUST00000235954 Mlana protein_coding Interval_30793 chr11 96490365 96490737 + 0 NA intron (ENSMUSG00000057058.16, intron 2 of 7) protein_coding-intron (ENSMUSG00000057058.16, intron 2 of 11) 6769 ENSMUSG00000057058.16 ENSMUSG00000057058 ENSMUST00000123814 Skap1 protein_coding Interval_22475 chr11 10850296 10850506 + 0 NA Intergenic Intergenic -266084 ENSMUSG00000050830.17 ENSMUSG00000050830 ENSMUST00000154155 Vwc2 protein_coding Interval_44903 chr13 49602663 49603280 + 0 NA intron (ENSMUSG00000021391.10, intron 5 of 5) protein_coding-intron (ENSMUSG00000021391.10, intron 5 of 7) -5075 ENSMUSG00000021390.6 ENSMUSG00000021390 ENSMUST00000021822 Ogn protein_coding Interval_2301 chr1 37912627 37913535 + 0 NA intron (ENSMUSG00000061584.6, intron 2 of 5) protein_coding-intron (ENSMUSG00000061584.6, intron 2 of 5) 3412 ENSMUSG00000061584.6 ENSMUSG00000061584 ENSMUST00000078307 Lyg2 protein_coding Interval_10838 chr1 175888898 175889245 + 0 NA intron (ENSMUSG00000039748.11, intron 6 of 6) protein_coding-intron (ENSMUSG00000039748.11, intron 6 of 14) 8277 ENSMUSG00000039748.11 ENSMUSG00000039748 ENSMUST00000192378 Exo1 protein_coding Interval_2337 chr1 38159251 38159940 + 0 NA intron (ENSMUSG00000102716.1, intron 5 of 5) lincRNA-intron (ENSMUSG00000102716.1, intron 5 of 5) 27512 ENSMUSG00000102716.1 ENSMUSG00000102716 ENSMUST00000194892 Gm5099 lincRNA Interval_8083 chr1 135619796 135621998 + 0 NA intron (ENSMUSG00000009418.16, intron 1 of 30) protein_coding-intron (ENSMUSG00000009418.16, intron 1 of 1) 36124 ENSMUSG00000054412.5 ENSMUSG00000054412 ENSMUST00000067468 Gm4793 antisense Interval_33938 chr11 119539951 119540829 + 0 NA exon (ENSMUSG00000025582.4, exon 5 of 5) protein_coding-exon (ENSMUSG00000025582.4, exon 5 of 5) 7363 ENSMUSG00000025582.4 ENSMUSG00000025582 ENSMUST00000026670 Nptx1 protein_coding Interval_4896 chr1 81709440 81710887 + 0 NA Intergenic Intergenic 32806 ENSMUSG00000087008.4 ENSMUSG00000087008 ENSMUST00000117185 Gm5530 processed_pseudogene Interval_73866 chr17 44890463 44890703 + 0 NA intron (ENSMUSG00000038954.14, intron 2 of 2) protein_coding-intron (ENSMUSG00000038954.14, intron 2 of 11) -10288 ENSMUSG00000117326.1 ENSMUSG00000117326 ENSMUST00000233907 4930564C03Rik processed_pseudogene Interval_153169 chr7 142034035 142034269 + 0 NA intron (ENSMUSG00000025147.7, intron 1 of 5) protein_coding-intron (ENSMUSG00000025147.7, intron 1 of 4) -8201 ENSMUSG00000025147.7 ENSMUSG00000025147 ENSMUST00000211505 Mob2 protein_coding Interval_6977 chr1 121488105 121488295 + 0 NA intron (ENSMUSG00000026339.18, intron 18 of 23) protein_coding-intron (ENSMUSG00000026339.18, intron 18 of 23) 5003 ENSMUSG00000085857.1 ENSMUSG00000085857 ENSMUST00000152863 Gm15392 antisense Interval_96268 chr2 121095726 121096121 + 0 NA exon (ENSMUSG00000079103.3, exon 11 of 13) protein_coding-exon (ENSMUSG00000079103.3, exon 11 of 13) -10101 ENSMUSG00000053675.8 ENSMUSG00000053675 ENSMUST00000142674 Tgm5 protein_coding Interval_39830 chr12 98804076 98804293 + 0 NA intron (ENSMUSG00000051166.10, intron 30 of 40) protein_coding-intron (ENSMUSG00000051166.10, intron 30 of 40) 9015 ENSMUSG00000113020.1 ENSMUSG00000113020 ENSMUST00000222872 Gm48063 TEC Interval_24897 chr11 40942745 40942929 + 0 NA Intergenic Intergenic 92286 ENSMUSG00000065916.1 ENSMUSG00000065916 ENSMUST00000083982 Gm24446 snRNA Interval_98211 chr2 149928663 149928957 + 0 NA intron (ENSMUSG00000074736.10, intron 2 of 3) protein_coding-intron (ENSMUSG00000074736.10, intron 3 of 4) -97168 ENSMUSG00000074737.2 ENSMUSG00000074737 ENSMUST00000099264 C530025M09Rik antisense Interval_125341 chr5 66315382 66315601 + 0 NA intron (ENSMUSG00000029207.16, intron 7 of 12) protein_coding-intron (ENSMUSG00000029207.16, intron 12 of 17) 7526 ENSMUSG00000106818.1 ENSMUSG00000106818 ENSMUST00000202694 Gm43790 TEC Interval_40212 chr12 102580454 102580711 + 0 NA intron (ENSMUSG00000057963.9, intron 7 of 9) protein_coding-intron (ENSMUSG00000057963.9, intron 7 of 9) 10828 ENSMUSG00000102953.1 ENSMUSG00000102953 ENSMUST00000192133 Gm37019 TEC Interval_159046 chr8 89042048 89044253 + 0 NA intron (ENSMUSG00000031665.7, intron 1 of 3) protein_coding-intron (ENSMUSG00000031665.7, intron 1 of 3) 1012 ENSMUSG00000031665.7 ENSMUSG00000031665 ENSMUST00000034090 Sall1 protein_coding Interval_53252 chr14 55590696 55592284 + 0 NA promoter-TSS (ENSMUSG00000047098.18) protein_coding-promoter-TSS (ENSMUSG00000047098.18) -1979 ENSMUSG00000079197.10 ENSMUSG00000079197 ENSMUST00000159297 Psme2 protein_coding Interval_122867 chr5 26492321 26492610 + 0 NA intron (ENSMUSG00000029044.9, intron 1 of 4) lincRNA-intron (ENSMUSG00000029044.9, intron 1 of 3) 824 ENSMUSG00000029044.9 ENSMUSG00000029044 ENSMUST00000196508 4930584F24Rik lincRNA Interval_49221 chr13 109583950 109584132 + 0 NA intron (ENSMUSG00000021699.17, intron 1 of 14) protein_coding-intron (ENSMUSG00000021699.17, intron 1 of 14) 259297 ENSMUSG00000076946.2 ENSMUSG00000076946 ENSMUST00000103758 Mir582 miRNA Interval_129484 chr5 120502981 120503761 + 0 NA exon (ENSMUSG00000029598.12, exon 1 of 12) protein_coding-exon (ENSMUSG00000029598.12, exon 1 of 12) 241 ENSMUSG00000029598.12 ENSMUSG00000029598 ENSMUST00000151361 Plbd2 protein_coding Interval_34649 chr12 8351240 8351758 + 0 NA Intergenic Intergenic -14782 ENSMUSG00000111889.1 ENSMUSG00000111889 ENSMUST00000217669 Gm48071 antisense Interval_174580 chrX 159409275 159409521 + 0 NA TTS (ENSMUSG00000083437.1) processed_pseudogene-TTS (ENSMUSG00000083437.1) 1112 ENSMUSG00000083437.1 ENSMUSG00000083437 ENSMUST00000122329 Gm15187 processed_pseudogene Interval_164200 chr9 32434203 32434815 + 0 NA intron (ENSMUSG00000016087.13, intron 5 of 6) protein_coding-intron (ENSMUSG00000016087.13, intron 5 of 8) 12419 ENSMUSG00000064492.1 ENSMUSG00000064492 ENSMUST00000082558 Gm22060 snRNA Interval_29737 chr11 86476479 86477576 + 0 NA Intergenic Intergenic -7703 ENSMUSG00000020521.7 ENSMUSG00000020521 ENSMUST00000131246 Rnft1 protein_coding Interval_136410 chr6 54210199 54210794 + 0 NA intron (ENSMUSG00000004633.17, intron 3 of 4) protein_coding-intron (ENSMUSG00000004633.17, intron 3 of 12) -32813 ENSMUSG00000080205.2 ENSMUSG00000080205 ENSMUST00000112504 Gm15526 processed_pseudogene Interval_95632 chr2 113197736 113198104 + 0 NA intron (ENSMUSG00000057378.15, intron 1 of 103) protein_coding-intron (ENSMUSG00000057378.15, intron 1 of 102) -87812 ENSMUSG00000041255.2 ENSMUSG00000041255 ENSMUST00000040856 Tmco5b protein_coding Interval_46724 chr13 69642791 69643061 + 0 NA Intergenic Intergenic 12586 ENSMUSG00000113790.1 ENSMUSG00000113790 ENSMUST00000222550 Gm17872 processed_pseudogene Interval_140372 chr6 117572437 117572774 + 0 NA TTS (ENSMUSG00000054488.14) lincRNA-TTS (ENSMUSG00000054488.14) 4933 ENSMUSG00000054488.14 ENSMUSG00000054488 ENSMUST00000165995 Gm9946 lincRNA Interval_162176 chr8 125704535 125705035 + 0 NA Intergenic Intergenic -31050 ENSMUSG00000031851.14 ENSMUSG00000031851 ENSMUST00000152189 Ntpcr protein_coding Interval_40342 chr12 104000405 104001428 + 0 NA intron (ENSMUSG00000058260.2, intron 3 of 4) protein_coding-intron (ENSMUSG00000058260.2, intron 3 of 4) -4337 ENSMUSG00000093753.1 ENSMUSG00000093753 ENSMUST00000176106 Gm28577 processed_transcript Interval_108914 chr3 133322393 133323134 + 0 NA exon (ENSMUSG00000028013.16, exon 1 of 1) protein_coding-exon (ENSMUSG00000028013.16, exon 1 of 1) 1295 ENSMUSG00000028013.16 ENSMUSG00000028013 ENSMUST00000196807 Ppa2 protein_coding Interval_53071 chr14 54227545 54229715 + 0 NA Intergenic Intergenic 8109 ENSMUSG00000076928.5 ENSMUSG00000076928 ENSMUST00000198398 Trac TR_C_gene Interval_119218 chr4 136270843 136271569 + 0 NA TTS (ENSMUSG00000001604.14) protein_coding-TTS (ENSMUSG00000001604.14) -13477 ENSMUSG00000051351.14 ENSMUSG00000051351 ENSMUST00000130658 Zfp46 protein_coding Interval_171730 chr9 120558123 120558584 + 0 NA exon (ENSMUSG00000041608.8, exon 7 of 11) protein_coding-exon (ENSMUSG00000041608.8, exon 7 of 11) 319 ENSMUSG00000041608.8 ENSMUSG00000041608 ENSMUST00000143579 Entpd3 protein_coding Interval_134254 chr6 23810937 23811355 + 0 NA intron (ENSMUSG00000017978.18, intron 2 of 29) protein_coding-intron (ENSMUSG00000017978.18, intron 1 of 29) 27991 ENSMUSG00000017978.18 ENSMUSG00000017978 ENSMUST00000115355 Cadps2 protein_coding Interval_122724 chr5 24897406 24898087 + 0 NA intron (ENSMUSG00000028944.14, intron 1 of 8) protein_coding-intron (ENSMUSG00000028944.14, intron 5 of 15) -4823 ENSMUSG00000086446.1 ENSMUSG00000086446 ENSMUST00000134633 Prkag2os1 antisense Interval_21385 chr10 128297098 128298290 + 0 NA exon (ENSMUSG00000025383.2, exon 1 of 3) protein_coding-exon (ENSMUSG00000025383.2, exon 1 of 3) 1058 ENSMUSG00000025383.2 ENSMUSG00000025383 ENSMUST00000218109 Il23a protein_coding Interval_101183 chr2 179096912 179097566 + 0 NA Intergenic Intergenic -76106 ENSMUSG00000082215.3 ENSMUSG00000082215 ENSMUST00000118225 Gm14314 processed_pseudogene Interval_112869 chr4 45653984 45655040 + 0 NA Intergenic Intergenic 14768 ENSMUSG00000085980.2 ENSMUSG00000085980 ENSMUST00000211200 Gm12408 lincRNA Interval_163180 chr9 17190376 17190888 + 0 NA Intergenic Intergenic 160587 ENSMUSG00000090602.3 ENSMUSG00000090602 ENSMUST00000164523 Gm5611 processed_pseudogene Interval_54340 chr14 67807445 67807671 + 0 NA intron (ENSMUSG00000044447.5, intron 22 of 51) protein_coding-intron (ENSMUSG00000044447.5, intron 22 of 51) -42599 ENSMUSG00000044447.5 ENSMUSG00000044447 ENSMUST00000224823 Dock5 protein_coding Interval_43925 chr13 38079447 38081397 + 0 NA Intergenic Intergenic -5780 ENSMUSG00000098481.1 ENSMUSG00000098481 ENSMUST00000184583 Gm27387 miRNA Interval_163741 chr9 25150787 25152327 + 0 NA promoter-TSS (ENSMUSG00000100002.2) lincRNA-promoter-TSS (ENSMUSG00000100002.2) 141 ENSMUSG00000008429.8 ENSMUSG00000008429 ENSMUST00000214190 Herpud2 protein_coding Interval_44264 chr13 43187881 43188366 + 0 NA Intergenic Intergenic -28571 ENSMUSG00000021368.15 ENSMUSG00000021368 ENSMUST00000221095 Tbc1d7 protein_coding Interval_54906 chr14 76144756 76146351 + 0 NA Intergenic Intergenic 34662 ENSMUSG00000022009.1 ENSMUSG00000022009 ENSMUST00000022586 Nufip1 protein_coding Interval_126080 chr5 77257486 77258114 + 0 NA Intergenic Intergenic -8396 ENSMUSG00000029249.15 ENSMUSG00000029249 ENSMUST00000113449 Rest protein_coding Interval_42589 chr13 16023778 16024070 + 0 NA promoter-TSS (ENSMUSG00000113701.1) transcribed_processed_pseudogene-promoter-TSS (ENSMUSG00000113701.1) -501 ENSMUSG00000113701.1 ENSMUSG00000113701 ENSMUST00000223006 B230303A05Rik transcribed_processed_pseudogene Interval_139184 chr6 97018800 97019769 + 0 NA intron (ENSMUSG00000046500.8, intron 2 of 5) protein_coding-intron (ENSMUSG00000046500.8, intron 2 of 5) 41109 ENSMUSG00000046500.8 ENSMUSG00000046500 ENSMUST00000203930 Tafa4 protein_coding Interval_43755 chr13 36106872 36107964 + 0 NA intron (ENSMUSG00000046573.7, intron 1 of 2) protein_coding-intron (ENSMUSG00000046573.7, intron 1 of 2) 10108 ENSMUSG00000046573.7 ENSMUSG00000046573 ENSMUST00000053265 Lyrm4 protein_coding Interval_122711 chr5 24828345 24828701 + 0 NA intron (ENSMUSG00000028945.9, intron 1 of 2) protein_coding-intron (ENSMUSG00000028945.9, intron 1 of 7) -7686 ENSMUSG00000089475.1 ENSMUSG00000089475 ENSMUST00000158850 Gm25363 misc_RNA Interval_18786 chr10 90733410 90734189 + 0 NA exon (ENSMUSG00000112153.1, exon 3 of 3) sense_intronic-exon (ENSMUSG00000112153.1, exon 3 of 3) 4839 ENSMUSG00000112153.1 ENSMUSG00000112153 ENSMUST00000218673 Gm47591 sense_intronic Interval_68152 chr16 65830038 65830238 + 0 NA intron (ENSMUSG00000091243.2, intron 1 of 2) protein_coding-intron (ENSMUSG00000091243.2, intron 2 of 3) 1525 ENSMUSG00000091243.2 ENSMUSG00000091243 ENSMUST00000228708 Vgll3 protein_coding Interval_63446 chr15 101137269 101137886 + 0 NA promoter-TSS (ENSMUSG00000000530.16) protein_coding-promoter-TSS (ENSMUSG00000000530.16) -5985 ENSMUSG00000087690.1 ENSMUSG00000087690 ENSMUST00000153253 Gm16031 antisense Interval_56442 chr14 118782404 118783657 + 0 NA Intergenic Intergenic 7878 ENSMUSG00000088105.1 ENSMUSG00000088105 ENSMUST00000157480 Gm22379 snoRNA Interval_48491 chr13 99410203 99410478 + 0 NA exon (ENSMUSG00000097828.2, exon 2 of 2) processed_transcript-exon (ENSMUSG00000097828.2, exon 2 of 2) 2324 ENSMUSG00000097828.2 ENSMUSG00000097828 ENSMUST00000225937 6430562O15Rik processed_transcript Interval_14775 chr10 39751980 39753238 + 0 NA exon (ENSMUSG00000081608.1, exon 1 of 1) processed_pseudogene-exon (ENSMUSG00000081608.1, exon 1 of 1) 259 ENSMUSG00000081608.1 ENSMUSG00000081608 ENSMUST00000122161 Gm16210 processed_pseudogene Interval_101468 chr2 181610013 181610793 + 0 NA intron (ENSMUSG00000002455.14, intron 2 of 11) protein_coding-intron (ENSMUSG00000002455.14, intron 2 of 20) 9030 ENSMUSG00000002455.14 ENSMUSG00000002455 ENSMUST00000139955 Prpf6 protein_coding Interval_140081 chr6 113910457 113911474 + 0 NA promoter-TSS (ENSMUSG00000030302.16) protein_coding-promoter-TSS (ENSMUSG00000030302.16) -19426 ENSMUSG00000030302.16 ENSMUSG00000030302 ENSMUST00000154738 Atp2b2 protein_coding Interval_32816 chr11 111032897 111033203 + 0 NA Intergenic Intergenic -33114 ENSMUSG00000041695.2 ENSMUSG00000041695 ENSMUST00000042970 Kcnj2 protein_coding Interval_85016 chr19 21563889 21564804 + 0 NA Intergenic Intergenic 12142 ENSMUSG00000079382.3 ENSMUSG00000079382 ENSMUST00000112772 Gm3443 transcribed_unitary_pseudogene Interval_153391 chr7 144336771 144337129 + 0 NA intron (ENSMUSG00000037541.22, intron 4 of 12) protein_coding-intron (ENSMUSG00000037541.22, intron 2 of 9) 69983 ENSMUSG00000085745.1 ENSMUSG00000085745 ENSMUST00000125355 Gm14372 antisense Interval_101236 chr2 179711094 179711936 + 0 NA intron (ENSMUSG00000000305.12, intron 2 of 2) protein_coding-intron (ENSMUSG00000000305.12, intron 2 of 15) -65648 ENSMUSG00000000305.12 ENSMUSG00000000305 ENSMUST00000098996 Cdh4 protein_coding Interval_57006 chr15 3998975 3999464 + 0 NA intron (ENSMUSG00000097662.1, intron 2 of 2) lincRNA-intron (ENSMUSG00000097662.1, intron 2 of 2) 3180 ENSMUSG00000097662.1 ENSMUSG00000097662 ENSMUST00000180518 Gm2093 lincRNA Interval_149524 chr7 99328700 99330043 + 0 NA intron (ENSMUSG00000055407.14, intron 3 of 3) protein_coding-intron (ENSMUSG00000055407.14, intron 3 of 3) 8171 ENSMUSG00000109460.1 ENSMUSG00000109460 ENSMUST00000129058 Gm45591 sense_intronic Interval_139766 chr6 108524160 108524386 + 0 NA intron (ENSMUSG00000030102.11, intron 60 of 61) protein_coding-intron (ENSMUSG00000030102.11, intron 60 of 61) 1414 ENSMUSG00000107458.1 ENSMUSG00000107458 ENSMUST00000203360 Gm44040 antisense Interval_120030 chr4 141439221 141439812 + 0 NA Intergenic Intergenic -3411 ENSMUSG00000070637.2 ENSMUSG00000070637 ENSMUST00000094544 Srarp protein_coding Interval_69470 chr16 93761744 93762266 + 0 NA promoter-TSS (ENSMUSG00000022946.10) protein_coding-promoter-TSS (ENSMUSG00000022946.10) -30784 ENSMUSG00000022946.10 ENSMUSG00000022946 ENSMUST00000228423 Dop1b protein_coding Interval_83403 chr18 84926428 84926686 + 0 NA Intergenic Intergenic -8471 ENSMUSG00000034391.12 ENSMUSG00000034391 ENSMUST00000225015 Fbxo15 protein_coding Interval_56195 chr14 111811136 111811618 + 0 NA Intergenic Intergenic 100779 ENSMUSG00000118534.1 ENSMUSG00000118534 ENSMUST00000238868 AC102368.1 processed_pseudogene Interval_73530 chr17 39426399 39426750 + 0 NA Intergenic Intergenic -10338 ENSMUSG00000117024.1 ENSMUSG00000117024 ENSMUST00000233071 Gm49831 unprocessed_pseudogene Interval_78101 chr18 8123781 8124712 + 0 NA Intergenic Intergenic -56333 ENSMUSG00000117490.1 ENSMUSG00000117490 ENSMUST00000234300 Gm35031 lincRNA Interval_144296 chr7 24352607 24353302 + 0 NA intron (ENSMUSG00000030484.5, intron 3 of 4) protein_coding-intron (ENSMUSG00000030484.5, intron 3 of 4) 3758 ENSMUSG00000030484.5 ENSMUSG00000030484 ENSMUST00000032683 Lypd5 protein_coding Interval_52021 chr14 34660343 34662439 + 0 NA promoter-TSS (ENSMUSG00000115575.1) lincRNA-promoter-TSS (ENSMUSG00000115575.1) -316 ENSMUSG00000115575.1 ENSMUSG00000115575 ENSMUST00000227643 Gm49024 lincRNA Interval_51757 chr14 32017179 32017410 + 0 NA Intergenic Intergenic -4292 ENSMUSG00000115120.1 ENSMUSG00000115120 ENSMUST00000226278 4930425P05Rik lincRNA Interval_91113 chr2 35174447 35174742 + 0 NA promoter-TSS (ENSMUSG00000057110.15) protein_coding-promoter-TSS (ENSMUSG00000057110.15) 26382 ENSMUSG00000026878.17 ENSMUSG00000026878 ENSMUST00000126224 Rab14 protein_coding Interval_147957 chr7 75870622 75871507 + 0 NA intron (ENSMUSG00000055652.14, intron 2 of 2) protein_coding-intron (ENSMUSG00000055652.14, intron 2 of 2) 22667 ENSMUSG00000055652.14 ENSMUSG00000055652 ENSMUST00000205887 Klhl25 protein_coding Interval_70046 chr17 4968642 4969400 + 0 NA Intergenic Intergenic -22207 ENSMUSG00000116551.1 ENSMUSG00000116551 ENSMUST00000232522 Gm41517 lincRNA Interval_625 chr1 9066161 9067077 + 0 NA intron (ENSMUSG00000025909.16, intron 2 of 20) protein_coding-intron (ENSMUSG00000025909.16, intron 3 of 4) -102998 ENSMUSG00000066693.2 ENSMUSG00000066693 ENSMUST00000085919 Gm7493 processed_pseudogene Interval_168802 chr9 87183284 87184176 + 0 NA exon (ENSMUSG00000042761.14, exon 4 of 4) protein_coding-exon (ENSMUSG00000042761.14, exon 4 of 4) 5683 ENSMUSG00000102830.1 ENSMUSG00000102830 ENSMUST00000194991 Gm37012 TEC Interval_132006 chr5 142220852 142221460 + 0 NA Intergenic Intergenic -61950 ENSMUSG00000097947.1 ENSMUSG00000097947 ENSMUST00000182990 Gm26970 processed_pseudogene Interval_107239 chr3 104827903 104828390 + 0 NA promoter-TSS (ENSMUSG00000106251.1) sense_intronic-promoter-TSS (ENSMUSG00000106251.1) -242 ENSMUSG00000106251.1 ENSMUSG00000106251 ENSMUST00000197199 Gm42658 sense_intronic Interval_156458 chr8 48416947 48417409 + 0 NA exon (ENSMUSG00000031561.16, exon 3 of 29) protein_coding-exon (ENSMUSG00000031561.16, exon 3 of 29) 138135 ENSMUSG00000031561.16 ENSMUSG00000031561 ENSMUST00000211812 Tenm3 protein_coding Interval_169258 chr9 95923137 95923640 + 0 NA intron (ENSMUSG00000032409.15, intron 34 of 46) protein_coding-intron (ENSMUSG00000032409.15, intron 34 of 46) -11225 ENSMUSG00000089085.1 ENSMUSG00000089085 ENSMUST00000158460 Gm24004 snRNA Interval_102517 chr3 27434770 27436249 + 0 NA intron (ENSMUSG00000039286.12, intron 24 of 26) protein_coding-intron (ENSMUSG00000039286.12, intron 23 of 25) 64158 ENSMUSG00000051136.1 ENSMUSG00000051136 ENSMUST00000057186 Ghsr protein_coding Interval_164233 chr9 33342528 33342805 + 0 NA Intergenic Intergenic 46422 ENSMUSG00000111467.1 ENSMUSG00000111467 ENSMUST00000215382 Gm47775 lincRNA Interval_76262 chr17 78585073 78585255 + 0 NA intron (ENSMUSG00000024076.10, intron 5 of 12) protein_coding-intron (ENSMUSG00000024076.10, intron 6 of 13) 11236 ENSMUSG00000024076.10 ENSMUSG00000024076 ENSMUST00000232864 Vit protein_coding Interval_113912 chr4 59823441 59823724 + 0 NA intron (ENSMUSG00000028385.14, intron 1 of 8) protein_coding-intron (ENSMUSG00000028385.14, intron 1 of 8) -10095 ENSMUSG00000080772.1 ENSMUSG00000080772 ENSMUST00000120410 Gm12543 transcribed_processed_pseudogene Interval_156195 chr8 45871360 45871994 + 0 NA Intergenic Intergenic -7074 ENSMUSG00000080378.1 ENSMUSG00000080378 ENSMUST00000116728 Gm25309 snRNA Interval_101774 chr3 9510401 9510575 + 0 NA intron (ENSMUSG00000040209.12, intron 1 of 9) protein_coding-intron (ENSMUSG00000040209.12, intron 2 of 8) 14320 ENSMUSG00000103485.1 ENSMUSG00000103485 ENSMUST00000192900 Gm38001 TEC Interval_73201 chr17 35544045 35544976 + 0 NA Intergenic Intergenic -7618 ENSMUSG00000039518.7 ENSMUSG00000039518 ENSMUST00000044804 Cdsn protein_coding Interval_83355 chr18 84529269 84529780 + 0 NA intron (ENSMUSG00000048410.17, intron 2 of 2) protein_coding-intron (ENSMUSG00000048410.17, intron 2 of 2) -94589 ENSMUSG00000048410.17 ENSMUSG00000048410 ENSMUST00000182297 Zfp407 protein_coding Interval_15694 chr10 53629314 53630515 + 0 NA promoter-TSS (ENSMUSG00000058298.10) protein_coding-promoter-TSS (ENSMUSG00000058298.10) 525 ENSMUSG00000058298.10 ENSMUSG00000058298 ENSMUST00000219838 Mcm9 protein_coding Interval_19973 chr10 111599573 111600832 + 0 NA intron (ENSMUSG00000112249.1, intron 1 of 3) lincRNA-intron (ENSMUSG00000112249.1, intron 1 of 3) 1025 ENSMUSG00000112249.1 ENSMUSG00000112249 ENSMUST00000219137 Gm30262 lincRNA Interval_124366 chr5 44791647 44791874 + 0 NA intron (ENSMUSG00000039706.11, intron 1 of 8) protein_coding-intron (ENSMUSG00000039706.11, intron 1 of 7) 7859 ENSMUSG00000039706.11 ENSMUSG00000039706 ENSMUST00000198894 Ldb2 protein_coding Interval_74271 chr17 47815458 47816142 + 0 NA TTS (ENSMUSG00000032717.14) protein_coding-TTS (ENSMUSG00000032717.14) 17472 ENSMUSG00000032717.14 ENSMUSG00000032717 ENSMUST00000129360 Mdfi protein_coding Interval_21480 chr10 128842497 128843124 + 0 NA intron (ENSMUSG00000078427.3, intron 4 of 11) protein_coding-intron (ENSMUSG00000078427.3, intron 4 of 10) 20878 ENSMUSG00000078427.3 ENSMUSG00000078427 ENSMUST00000220381 Sarnp protein_coding Interval_30273 chr11 92693989 92695095 + 0 NA Intergenic Intergenic 76431 ENSMUSG00000081363.2 ENSMUSG00000081363 ENSMUST00000118237 Gm11500 processed_pseudogene Interval_112711 chr4 44325318 44326023 + 0 NA TTS (ENSMUSG00000035683.13) protein_coding-TTS (ENSMUSG00000035683.13) -11612 ENSMUSG00000081127.1 ENSMUSG00000081127 ENSMUST00000118668 Gm12677 processed_pseudogene Interval_118424 chr4 131400666 131401248 + 0 NA Intergenic Intergenic -86240 ENSMUSG00000078531.3 ENSMUSG00000078531 ENSMUST00000149942 Gm831 lincRNA Interval_73739 chr17 43092457 43093011 + 0 NA Intergenic Intergenic 65532 ENSMUSG00000117011.1 ENSMUSG00000117011 ENSMUST00000232795 E130008D07Rik lincRNA Interval_91540 chr2 41814861 41815135 + 0 NA intron (ENSMUSG00000049252.17, intron 3 of 10) protein_coding-intron (ENSMUSG00000049252.17, intron 3 of 90) 173831 ENSMUSG00000081999.3 ENSMUSG00000081999 ENSMUST00000120980 Gm13461 processed_pseudogene Interval_36455 chr12 45073636 45075183 + 0 NA promoter-TSS (ENSMUSG00000046314.16) protein_coding-promoter-TSS (ENSMUSG00000046314.16) -183 ENSMUSG00000046314.16 ENSMUSG00000046314 ENSMUST00000218249 Stxbp6 protein_coding Interval_1815 chr1 33970500 33970763 + 0 NA intron (ENSMUSG00000026131.20, intron 3 of 102) protein_coding-intron (ENSMUSG00000026131.20, intron 3 of 102) -6946 ENSMUSG00000099382.1 ENSMUSG00000099382 ENSMUST00000190740 Gm28631 processed_pseudogene Interval_56233 chr14 114349466 114349917 + 0 NA Intergenic Intergenic -38888 ENSMUSG00000115658.1 ENSMUSG00000115658 ENSMUST00000226772 Gm19829 processed_pseudogene Interval_92556 chr2 60632359 60632543 + 0 NA intron (ENSMUSG00000026971.15, intron 9 of 14) protein_coding-intron (ENSMUSG00000026971.15, intron 11 of 17) -36157 ENSMUSG00000083195.1 ENSMUSG00000083195 ENSMUST00000118026 Gm13567 processed_pseudogene Interval_156406 chr8 47956227 47956839 + 0 NA intron (ENSMUSG00000031563.8, intron 1 of 22) protein_coding-intron (ENSMUSG00000031563.8, intron 1 of 22) 34391 ENSMUSG00000031563.8 ENSMUSG00000031563 ENSMUST00000212282 Wwc2 protein_coding Interval_140961 chr6 123184735 123185070 + 0 NA intron (ENSMUSG00000067767.5, intron 3 of 5) protein_coding-intron (ENSMUSG00000067767.5, intron 3 of 5) 10811 ENSMUSG00000089183.1 ENSMUSG00000089183 ENSMUST00000158558 Gm22946 snRNA Interval_158562 chr8 84501059 84502658 + 0 NA intron (ENSMUSG00000034656.18, intron 5 of 48) protein_coding-intron (ENSMUSG00000034656.18, intron 3 of 46) 115326 ENSMUSG00000086067.1 ENSMUSG00000086067 ENSMUST00000127527 Gm16183 antisense Interval_33853 chr11 119022476 119024011 + 0 NA promoter-TSS (ENSMUSG00000025577.7) protein_coding-promoter-TSS (ENSMUSG00000025577.7) -482 ENSMUSG00000025577.7 ENSMUSG00000025577 ENSMUST00000139746 Cbx2 protein_coding Interval_51117 chr14 23583185 23583479 + 0 NA intron (ENSMUSG00000063142.15, intron 5 of 16) protein_coding-intron (ENSMUSG00000063142.15, intron 4 of 28) 23084 ENSMUSG00000100100.1 ENSMUSG00000100100 ENSMUST00000187439 Gm29626 antisense Interval_131605 chr5 138715620 138716498 + 0 NA Intergenic Intergenic -9336 ENSMUSG00000103298.1 ENSMUSG00000103298 ENSMUST00000193602 Gm38232 TEC Interval_52547 chr14 47405674 47406671 + 0 NA intron (ENSMUSG00000037544.14, intron 1 of 1) protein_coding-intron (ENSMUSG00000037544.14, intron 9 of 18) 211 ENSMUSG00000037544.14 ENSMUSG00000037544 ENSMUST00000179392 Dlgap5 protein_coding Interval_78959 chr18 22984907 22985887 + 0 NA intron (ENSMUSG00000041923.15, intron 1 of 9) protein_coding-intron (ENSMUSG00000041923.15, intron 1 of 10) 53542 ENSMUSG00000041923.15 ENSMUSG00000041923 ENSMUST00000097652 Nol4 protein_coding Interval_63810 chr16 3531633 3533476 + 0 NA Intergenic Intergenic 1542 ENSMUSG00000116300.1 ENSMUSG00000116300 ENSMUST00000229645 Gm49509 processed_pseudogene Interval_90207 chr2 29033732 29034858 + 0 NA intron (ENSMUSG00000079502.8, intron 1 of 6) protein_coding-intron (ENSMUSG00000079502.8, intron 1 of 5) 5065 ENSMUSG00000079502.8 ENSMUSG00000079502 ENSMUST00000113843 Cfap77 protein_coding Interval_72058 chr17 27775603 27776183 + 0 NA intron (ENSMUSG00000056692.13, intron 2 of 3) protein_coding-intron (ENSMUSG00000056692.13, intron 3 of 3) -8486 ENSMUSG00000080731.2 ENSMUSG00000080731 ENSMUST00000121414 Rps2-ps9 transcribed_processed_pseudogene Interval_28428 chr11 75817113 75817719 + 0 NA intron (ENSMUSG00000087059.7, intron 2 of 2) processed_transcript-intron (ENSMUSG00000087059.7, intron 2 of 4) -21367 ENSMUSG00000020848.7 ENSMUSG00000020848 ENSMUST00000021209 Doc2b protein_coding Interval_34443 chr12 4200605 4201963 + 0 NA exon (ENSMUSG00000020654.15, exon 10 of 21) protein_coding-exon (ENSMUSG00000020654.15, exon 10 of 21) 15222 ENSMUSG00000020652.17 ENSMUSG00000020652 ENSMUST00000126017 Cenpo protein_coding Interval_103301 chr3 38299993 38300449 + 0 NA Intergenic Intergenic -32137 ENSMUSG00000092986.2 ENSMUSG00000092986 ENSMUST00000175245 Gm25574 misc_RNA Interval_65673 chr16 25037508 25040329 + 0 NA Intergenic Intergenic -20721 ENSMUSG00000096960.1 ENSMUSG00000096960 ENSMUST00000181655 A230028O05Rik lincRNA Interval_144862 chr7 28655717 28657600 + 0 NA intron (ENSMUSG00000108905.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000108905.1, intron 1 of 1) 14271 ENSMUSG00000108865.1 ENSMUSG00000108865 ENSMUST00000209122 Gm44617 processed_transcript Interval_146493 chr7 46376294 46379486 + 0 NA intron (ENSMUSG00000009471.4, intron 2 of 2) protein_coding-intron (ENSMUSG00000009471.4, intron 2 of 2) 1416 ENSMUSG00000009471.4 ENSMUSG00000009471 ENSMUST00000072514 Myod1 protein_coding Interval_110484 chr3 159403050 159403260 + 0 NA Intergenic Intergenic -88263 ENSMUSG00000104864.1 ENSMUSG00000104864 ENSMUST00000197367 Gm43655 processed_pseudogene Interval_129815 chr5 122510726 122511931 + 0 NA Intergenic Intergenic 4539 ENSMUSG00000088583.1 ENSMUSG00000088583 ENSMUST00000157958 Gm22965 snRNA Interval_154746 chr8 23043139 23043471 + 0 NA intron (ENSMUSG00000031543.18, intron 1 of 41) protein_coding-intron (ENSMUSG00000031543.18, intron 1 of 42) 58791 ENSMUSG00000106605.1 ENSMUSG00000106605 ENSMUST00000197671 Gm44365 miRNA Interval_29147 chr11 80658876 80659291 + 0 NA intron (ENSMUSG00000035441.14, intron 13 of 20) protein_coding-intron (ENSMUSG00000035441.14, intron 13 of 21) 120920 ENSMUSG00000035441.14 ENSMUSG00000035441 ENSMUST00000125944 Myo1d protein_coding Interval_6020 chr1 94034789 94035749 + 0 NA Intergenic Intergenic 14818 ENSMUSG00000034000.15 ENSMUSG00000034000 ENSMUST00000050890 Neu4 protein_coding Interval_119461 chr4 137739013 137740025 + 0 NA Intergenic Intergenic -32913 ENSMUSG00000087476.1 ENSMUSG00000087476 ENSMUST00000135358 Rap1gapos antisense Interval_79344 chr18 30793181 30793890 + 0 NA Intergenic Intergenic -184645 ENSMUSG00000117526.1 ENSMUSG00000117526 ENSMUST00000235078 Gm41780 processed_pseudogene Interval_129185 chr5 118050493 118050737 + 0 NA intron (ENSMUSG00000029359.13, intron 2 of 7) protein_coding-intron (ENSMUSG00000029359.13, intron 2 of 7) 14584 ENSMUSG00000029359.13 ENSMUSG00000029359 ENSMUST00000145526 Tesc protein_coding Interval_126144 chr5 79111301 79111506 + 0 NA Intergenic Intergenic -328794 ENSMUSG00000107308.1 ENSMUSG00000107308 ENSMUST00000200713 Gm43234 processed_pseudogene Interval_64998 chr16 17771273 17771966 + 0 NA intron (ENSMUSG00000022750.18, intron 2 of 6) protein_coding-intron (ENSMUSG00000022750.18, intron 2 of 6) 11942 ENSMUSG00000022750.18 ENSMUSG00000022750 ENSMUST00000140306 Klhl22 protein_coding Interval_171199 chr9 115141622 115142468 + 0 NA intron (ENSMUSG00000040875.12, intron 1 of 4) protein_coding-intron (ENSMUSG00000040875.12, intron 2 of 9) 44013 ENSMUSG00000098127.1 ENSMUSG00000098127 ENSMUST00000183244 Gm4665 antisense Interval_88770 chr2 10452999 10454141 + 0 NA intron (ENSMUSG00000061186.15, intron 9 of 22) protein_coding-intron (ENSMUSG00000061186.15, intron 8 of 22) -11717 ENSMUSG00000080500.1 ENSMUSG00000080500 ENSMUST00000116850 Gm22072 miRNA Interval_25542 chr11 49676174 49677237 + 0 NA TTS (ENSMUSG00000020362.13) protein_coding-TTS (ENSMUSG00000020362.13) 2352 ENSMUSG00000083061.1 ENSMUSG00000083061 ENSMUST00000118307 Gm12191 processed_pseudogene Interval_127498 chr5 104492620 104494646 + 0 NA exon (ENSMUSG00000034462.9, exon 1 of 2) protein_coding-exon (ENSMUSG00000034462.9, exon 1 of 2) 862 ENSMUSG00000034462.9 ENSMUSG00000034462 ENSMUST00000133540 Pkd2 protein_coding Interval_59393 chr15 52081312 52081956 + 0 NA Intergenic Intergenic -7674 ENSMUSG00000115457.1 ENSMUSG00000115457 ENSMUST00000227885 Gm2387 processed_pseudogene Interval_94370 chr2 90559459 90561065 + 0 NA intron (ENSMUSG00000025314.16, intron 1 of 23) protein_coding-intron (ENSMUSG00000025314.16, intron 1 of 23) 20385 ENSMUSG00000025314.16 ENSMUSG00000025314 ENSMUST00000168621 Ptprj protein_coding Interval_27934 chr11 70969350 70971414 + 0 NA promoter-TSS (ENSMUSG00000040667.11) protein_coding-promoter-TSS (ENSMUSG00000040667.11) -125 ENSMUSG00000018449.12 ENSMUSG00000018449 ENSMUST00000129540 Rpain protein_coding Interval_56506 chr14 119396986 119397260 + 0 NA intron (ENSMUSG00000053465.6, intron 1 of 1) protein_coding-intron (ENSMUSG00000053465.6, intron 1 of 1) 118699 ENSMUSG00000115684.1 ENSMUSG00000115684 ENSMUST00000227446 Gm6087 processed_pseudogene Interval_16977 chr10 70254880 70256604 + 0 NA intron (ENSMUSG00000037762.6, intron 1 of 5) protein_coding-intron (ENSMUSG00000037762.6, intron 1 of 5) -11237 ENSMUSG00000037762.6 ENSMUSG00000037762 ENSMUST00000155933 Slc16a9 protein_coding Interval_142684 chr6 145000652 145002227 + 0 NA intron (ENSMUSG00000030268.17, intron 10 of 10) protein_coding-intron (ENSMUSG00000030268.17, intron 10 of 10) 36749 ENSMUSG00000088867.1 ENSMUSG00000088867 ENSMUST00000158242 Gm23071 rRNA Interval_142761 chr6 145420225 145420677 + 0 NA intron (ENSMUSG00000054966.13, intron 2 of 10) protein_coding-intron (ENSMUSG00000054966.13, intron 3 of 8) 13630 ENSMUSG00000054966.13 ENSMUSG00000054966 ENSMUST00000142122 Lmntd1 protein_coding Interval_51014 chr14 21613498 21613736 + 0 NA intron (ENSMUSG00000021767.19, intron 2 of 15) protein_coding-intron (ENSMUSG00000021767.19, intron 3 of 16) 89485 ENSMUSG00000063821.6 ENSMUSG00000063821 ENSMUST00000224735 Dupd1 protein_coding Interval_145364 chr7 34246725 34247837 + 0 NA intron (ENSMUSG00000066571.13, intron 9 of 13) protein_coding-intron (ENSMUSG00000066571.13, intron 8 of 12) -3757 ENSMUSG00000078380.1 ENSMUSG00000078380 ENSMUST00000105172 Gm6096 processed_pseudogene Interval_60370 chr15 73207963 73208422 + 0 NA intron (ENSMUSG00000022607.18, intron 34 of 34) protein_coding-intron (ENSMUSG00000022607.18, intron 31 of 31) -30345 ENSMUSG00000036698.11 ENSMUSG00000036698 ENSMUST00000230464 Ago2 protein_coding Interval_64644 chr16 13846656 13846959 + 0 NA TTS (ENSMUSG00000022680.14) protein_coding-TTS (ENSMUSG00000022680.14) 27575 ENSMUSG00000099314.1 ENSMUSG00000099314 ENSMUST00000183701 Gm27734 miRNA Interval_151689 chr7 126056056 126056271 + 0 NA intron (ENSMUSG00000046182.8, intron 1 of 6) protein_coding-intron (ENSMUSG00000046182.8, intron 1 of 6) 8284 ENSMUSG00000108376.1 ENSMUSG00000108376 ENSMUST00000206586 Gm44874 TEC Interval_60877 chr15 77313034 77315372 + 0 NA Intergenic Intergenic 52496 ENSMUSG00000116413.1 ENSMUSG00000116413 ENSMUST00000230034 Gm49436 TEC Interval_122982 chr5 28157957 28159583 + 0 NA Intergenic Intergenic -6924 ENSMUSG00000039095.8 ENSMUSG00000039095 ENSMUST00000036177 En2 protein_coding Interval_32908 chr11 113021103 113022193 + 0 NA Intergenic Intergenic 151429 ENSMUSG00000087259.7 ENSMUSG00000087259 ENSMUST00000150712 2610035D17Rik lincRNA Interval_115531 chr4 100214038 100214758 + 0 NA intron (ENSMUSG00000035305.5, intron 1 of 8) protein_coding-intron (ENSMUSG00000035305.5, intron 1 of 8) 94777 ENSMUSG00000086385.1 ENSMUSG00000086385 ENSMUST00000134206 Gm12701 sense_intronic Interval_103008 chr3 34357365 34358056 + 0 NA intron (ENSMUSG00000105265.4, intron 2 of 2) processed_transcript-intron (ENSMUSG00000105265.4, intron 2 of 4) -5998 ENSMUSG00000092196.2 ENSMUSG00000092196 ENSMUST00000174005 Gm38505 lincRNA Interval_44039 chr13 40360103 40361307 + 0 NA intron (ENSMUSG00000047094.9, intron 1 of 3) protein_coding-intron (ENSMUSG00000047094.9, intron 1 of 3) -72694 ENSMUSG00000047094.9 ENSMUSG00000047094 ENSMUST00000224813 Ofcc1 protein_coding Interval_57022 chr15 4375190 4376925 + 0 NA intron (ENSMUSG00000049148.8, intron 1 of 2) protein_coding-intron (ENSMUSG00000049148.8, intron 1 of 2) 566 ENSMUSG00000049148.8 ENSMUSG00000049148 ENSMUST00000061925 Plcxd3 protein_coding Interval_112882 chr4 45779271 45779478 + 0 NA Intergenic Intergenic -2165 ENSMUSG00000083685.1 ENSMUSG00000083685 ENSMUST00000121867 Gm12412 processed_pseudogene Interval_165080 chr9 44440626 44441423 + 0 NA promoter-TSS (ENSMUSG00000074397.5) protein_coding-promoter-TSS (ENSMUSG00000074397.5) -9 ENSMUSG00000074397.5 ENSMUSG00000074397 ENSMUST00000215980 Foxr1 protein_coding Interval_42131 chr13 9064366 9064590 + 0 NA intron (ENSMUSG00000113543.1, intron 2 of 4) lincRNA-intron (ENSMUSG00000113543.1, intron 2 of 2) 11973 ENSMUSG00000113543.1 ENSMUSG00000113543 ENSMUST00000221989 Gm36264 lincRNA Interval_48255 chr13 97469540 97470702 + 0 NA intron (ENSMUSG00000078952.9, intron 1 of 1) lincRNA-intron (ENSMUSG00000078952.9, intron 1 of 1) -11044 ENSMUSG00000098238.1 ENSMUSG00000098238 ENSMUST00000183250 Gm8756 processed_pseudogene Interval_172958 chrX 57920730 57922385 + 0 NA Intergenic Intergenic -67916 ENSMUSG00000093905.1 ENSMUSG00000093905 ENSMUST00000082977 Gm25023 snRNA Interval_140435 chr6 118073638 118074050 + 0 NA intron (ENSMUSG00000030134.11, intron 1 of 12) protein_coding-intron (ENSMUSG00000030134.11, intron 1 of 12) 7425 ENSMUSG00000030134.11 ENSMUSG00000030134 ENSMUST00000203482 Rasgef1a protein_coding Interval_166143 chr9 57024958 57025253 + 0 NA intron (ENSMUSG00000032290.7, intron 2 of 3) protein_coding-intron (ENSMUSG00000032290.7, intron 4 of 12) 2873 ENSMUSG00000032290.7 ENSMUSG00000032290 ENSMUST00000215707 Ptpn9 protein_coding Interval_71614 chr17 24866729 24867049 + 0 NA intron (ENSMUSG00000046070.9, intron 1 of 2) protein_coding-intron (ENSMUSG00000046070.9, intron 1 of 2) -10767 ENSMUSG00000046070.9 ENSMUSG00000046070 ENSMUST00000234754 Igfals protein_coding Interval_151244 chr7 120124707 120125211 + 0 NA Intergenic Intergenic 20330 ENSMUSG00000030911.7 ENSMUSG00000030911 ENSMUST00000207333 Zp2 protein_coding Interval_24078 chr11 30039894 30040226 + 0 NA Intergenic Intergenic 57646 ENSMUSG00000080906.1 ENSMUSG00000080906 ENSMUST00000121962 Gm12095 processed_pseudogene Interval_126582 chr5 90385438 90385639 + 0 NA Intergenic Intergenic -11735 ENSMUSG00000106725.1 ENSMUSG00000106725 ENSMUST00000201590 Gm43363 TEC Interval_108714 chr3 130671752 130672097 + 0 NA Intergenic Intergenic 34025 ENSMUSG00000105466.1 ENSMUSG00000105466 ENSMUST00000197053 Gm42998 TEC Interval_146763 chr7 50060266 50061209 + 0 NA intron (ENSMUSG00000055409.14, intron 2 of 9) protein_coding-intron (ENSMUSG00000055409.14, intron 2 of 19) -37573 ENSMUSG00000055409.14 ENSMUSG00000055409 ENSMUST00000154410 Nell1 protein_coding Interval_121051 chr4 152445704 152446534 + 0 NA intron (ENSMUSG00000028931.12, intron 1 of 16) protein_coding-intron (ENSMUSG00000028931.12, intron 1 of 14) 31320 ENSMUSG00000028931.12 ENSMUSG00000028931 ENSMUST00000162017 Kcnab2 protein_coding Interval_59172 chr15 46087238 46087576 + 0 NA Intergenic Intergenic 64397 ENSMUSG00000065312.1 ENSMUSG00000065312 ENSMUST00000083378 Gm26063 snRNA Interval_166660 chr9 61667169 61670127 + 0 NA Intergenic Intergenic -94436 ENSMUSG00000111739.1 ENSMUSG00000111739 ENSMUST00000213572 Gm47241 processed_pseudogene Interval_77942 chr18 5968099 5969882 + 0 NA Intergenic Intergenic 23807 ENSMUSG00000117508.1 ENSMUSG00000117508 ENSMUST00000234953 Gm34804 lincRNA Interval_450 chr1 5461230 5462245 + 0 NA Intergenic Intergenic 58190 ENSMUSG00000102907.1 ENSMUSG00000102907 ENSMUST00000194850 Gm38264 TEC Interval_125199 chr5 65288669 65289248 + 0 NA intron (ENSMUSG00000029191.16, intron 10 of 24) protein_coding-intron (ENSMUSG00000029191.16, intron 10 of 24) -15291 ENSMUSG00000029191.16 ENSMUSG00000029191 ENSMUST00000203644 Rfc1 protein_coding Interval_139787 chr6 108702378 108703006 + 0 NA Intergenic Intergenic 39646 ENSMUSG00000030103.11 ENSMUSG00000030103 ENSMUST00000204550 Bhlhe40 protein_coding Interval_77317 chr17 87991450 87992094 + 0 NA TTS (ENSMUSG00000005370.4) protein_coding-TTS (ENSMUSG00000005370.4) 16677 ENSMUSG00000005370.4 ENSMUSG00000005370 ENSMUST00000234756 Msh6 protein_coding Interval_172236 chrX 11630710 11630997 + 0 NA Intergenic Intergenic 29499 ENSMUSG00000083492.1 ENSMUSG00000083492 ENSMUST00000121327 Gm14515 processed_pseudogene Interval_150562 chr7 112453707 112454524 + 0 NA intron (ENSMUSG00000030770.15, intron 2 of 13) protein_coding-intron (ENSMUSG00000030770.15, intron 1 of 12) 26210 ENSMUSG00000030770.15 ENSMUSG00000030770 ENSMUST00000126047 Parva protein_coding Interval_3394 chr1 57947727 57948060 + 0 NA TTS (ENSMUSG00000038305.15) protein_coding-TTS (ENSMUSG00000038305.15) 15088 ENSMUSG00000054770.16 ENSMUSG00000054770 ENSMUST00000160130 Kctd18 protein_coding Interval_16961 chr10 70156332 70156853 + 0 NA intron (ENSMUSG00000048701.13, intron 3 of 8) protein_coding-intron (ENSMUSG00000048701.13, intron 3 of 8) -18419 ENSMUSG00000048701.13 ENSMUSG00000048701 ENSMUST00000135607 Ccdc6 protein_coding Interval_131674 chr5 139208191 139209750 + 0 NA intron (ENSMUSG00000036817.14, intron 1 of 5) protein_coding-intron (ENSMUSG00000036817.14, intron 1 of 22) 7386 ENSMUSG00000106127.1 ENSMUSG00000106127 ENSMUST00000196947 4930520M14Rik antisense Interval_156362 chr8 47706658 47708323 + 0 NA Intergenic Intergenic -5776 ENSMUSG00000097706.1 ENSMUSG00000097706 ENSMUST00000180928 E030037K01Rik antisense Interval_98763 chr2 154800384 154801409 + 0 NA intron (ENSMUSG00000027593.15, intron 2 of 3) protein_coding-intron (ENSMUSG00000027593.15, intron 1 of 9) 9542 ENSMUSG00000027593.15 ENSMUSG00000027593 ENSMUST00000151578 Raly protein_coding Interval_142233 chr6 139561466 139562245 + 0 NA Intergenic Intergenic -4244 ENSMUSG00000107679.1 ENSMUSG00000107679 ENSMUST00000203246 4930404I20Rik lincRNA Interval_45221 chr13 53262425 53262666 + 0 NA intron (ENSMUSG00000021464.14, intron 1 of 8) protein_coding-intron (ENSMUSG00000021464.14, intron 1 of 8) 13113 ENSMUSG00000021464.14 ENSMUSG00000021464 ENSMUST00000149299 Ror2 protein_coding Interval_7030 chr1 122666282 122667640 + 0 NA Intergenic Intergenic 113788 ENSMUSG00000089190.1 ENSMUSG00000089190 ENSMUST00000158565 Gm25771 snoRNA Interval_97108 chr2 131279316 131279611 + 0 NA intron (ENSMUSG00000037514.17, intron 2 of 3) protein_coding-intron (ENSMUSG00000037514.17, intron 2 of 4) -8589 ENSMUSG00000065563.1 ENSMUSG00000065563 ENSMUST00000083629 Mir103-2 miRNA Interval_113374 chr4 53899676 53900670 + 0 NA Intergenic Intergenic -5523 ENSMUSG00000077418.1 ENSMUSG00000077418 ENSMUST00000104230 Gm23745 snoRNA Interval_24379 chr11 32767659 32769031 + 0 NA Intergenic Intergenic 7294 ENSMUSG00000098054.1 ENSMUSG00000098054 ENSMUST00000182196 Gm8192 processed_pseudogene Interval_150442 chr7 110668841 110669061 + 0 NA Intergenic Intergenic -29593 ENSMUSG00000099803.1 ENSMUSG00000099803 ENSMUST00000186888 Gm28863 antisense Interval_28819 chr11 78518693 78519481 + 0 NA TTS (ENSMUSG00000001100.10) protein_coding-TTS (ENSMUSG00000001100.10) 2268 ENSMUSG00000001100.10 ENSMUSG00000001100 ENSMUST00000151499 Poldip2 protein_coding Interval_76369 chr17 79653888 79655002 + 0 NA intron (ENSMUSG00000036368.8, intron 4 of 10) protein_coding-intron (ENSMUSG00000036368.8, intron 4 of 10) -17955 ENSMUSG00000036368.8 ENSMUSG00000036368 ENSMUST00000224097 Rmdn2 protein_coding Interval_117645 chr4 125231281 125232290 + 0 NA intron (ENSMUSG00000087010.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000087010.1, intron 1 of 1) 3188 ENSMUSG00000087010.1 ENSMUSG00000087010 ENSMUST00000130055 1700041M05Rik lincRNA Interval_71524 chr17 24300629 24301092 + 0 NA intron (ENSMUSG00000035435.17, intron 13 of 30) protein_coding-intron (ENSMUSG00000035435.17, intron 12 of 29) -3809 ENSMUSG00000094175.1 ENSMUSG00000094175 ENSMUST00000116896 Gm24427 miRNA Interval_68423 chr16 76336586 76337024 + 0 NA intron (ENSMUSG00000048490.14, intron 2 of 3) protein_coding-intron (ENSMUSG00000048490.14, intron 2 of 3) 37021 ENSMUSG00000048490.14 ENSMUSG00000048490 ENSMUST00000145649 Nrip1 protein_coding Interval_115568 chr4 100865178 100866454 + 0 NA intron (ENSMUSG00000028532.14, intron 2 of 26) protein_coding-intron (ENSMUSG00000028532.14, intron 2 of 26) -128894 ENSMUSG00000028532.14 ENSMUSG00000028532 ENSMUST00000136430 Cachd1 protein_coding Interval_48482 chr13 99366580 99367061 + 0 NA intron (ENSMUSG00000041632.7, intron 4 of 5) protein_coding-intron (ENSMUSG00000041632.7, intron 4 of 10) 21276 ENSMUSG00000041632.7 ENSMUSG00000041632 ENSMUST00000225973 Mrps27 protein_coding Interval_113787 chr4 58582927 58583219 + 0 NA Intergenic Intergenic -6691 ENSMUSG00000081186.1 ENSMUSG00000081186 ENSMUST00000121244 Gm12578 processed_pseudogene Interval_136070 chr6 50455228 50456574 + 0 NA exon (ENSMUSG00000029822.15, exon 1 of 22) protein_coding-exon (ENSMUSG00000029822.15, exon 1 of 22) 84133 ENSMUSG00000077357.1 ENSMUSG00000077357 ENSMUST00000104169 Gm26289 snoRNA Interval_110873 chr4 9291073 9291286 + 0 NA intron (ENSMUSG00000041216.15, intron 2 of 5) protein_coding-intron (ENSMUSG00000041216.15, intron 2 of 5) -3788 ENSMUSG00000086233.1 ENSMUSG00000086233 ENSMUST00000142744 Gm11816 antisense Interval_66563 chr16 35140480 35140732 + 0 NA Intergenic Intergenic 91991 ENSMUSG00000035376.10 ENSMUSG00000035376 ENSMUST00000231556 Hacd2 protein_coding Interval_127688 chr5 106663589 106663912 + 0 NA intron (ENSMUSG00000049606.16, intron 1 of 1) protein_coding-intron (ENSMUSG00000049606.16, intron 2 of 6) -6249 ENSMUSG00000088602.2 ENSMUSG00000088602 ENSMUST00000157977 Gm24191 snRNA Interval_75471 chr17 66892227 66892440 + 0 NA intron (ENSMUSG00000033278.10, intron 4 of 6) protein_coding-intron (ENSMUSG00000033278.10, intron 14 of 32) 30093 ENSMUSG00000117224.1 ENSMUSG00000117224 ENSMUST00000233778 Gm49940 processed_pseudogene Interval_97659 chr2 142342781 142343034 + 0 NA intron (ENSMUSG00000068205.14, intron 11 of 13) protein_coding-intron (ENSMUSG00000068205.14, intron 16 of 17) -39081 ENSMUSG00000089318.1 ENSMUSG00000089318 ENSMUST00000158693 Gm23179 misc_RNA Interval_92172 chr2 55276552 55276853 + 0 NA Intergenic Intergenic -15363 ENSMUSG00000082301.1 ENSMUSG00000082301 ENSMUST00000117686 Gm14032 processed_pseudogene Interval_69855 chr16 97582977 97583465 + 0 NA intron (ENSMUSG00000000385.8, intron 5 of 8) protein_coding-intron (ENSMUSG00000000385.8, intron 5 of 13) -15884 ENSMUSG00000000385.8 ENSMUSG00000000385 ENSMUST00000232141 Tmprss2 protein_coding Interval_85993 chr19 34814451 34814968 + 0 NA intron (ENSMUSG00000033610.16, intron 4 of 5) protein_coding-intron (ENSMUSG00000033610.16, intron 5 of 6) 6064 ENSMUSG00000065594.1 ENSMUSG00000065594 ENSMUST00000083660 Mir107 miRNA Interval_32019 chr11 104491540 104492833 + 0 NA TTS (ENSMUSG00000083782.1) processed_pseudogene-TTS (ENSMUSG00000083782.1) 573 ENSMUSG00000083782.1 ENSMUSG00000083782 ENSMUST00000120955 Gm11660 processed_pseudogene Interval_14599 chr10 36893699 36894445 + 0 NA Intergenic Intergenic -97694 ENSMUSG00000019777.16 ENSMUSG00000019777 ENSMUST00000123010 Hdac2 protein_coding Interval_91317 chr2 37734792 37735911 + 0 NA Intergenic Intergenic -47067 ENSMUSG00000092958.1 ENSMUSG00000092958 ENSMUST00000175217 Mir5128 miRNA Interval_55201 chr14 79290206 79291360 + 0 NA intron (ENSMUSG00000022018.7, intron 3 of 4) protein_coding-intron (ENSMUSG00000022018.7, intron 3 of 4) 10862 ENSMUSG00000022018.7 ENSMUSG00000022018 ENSMUST00000022595 Rgcc protein_coding Interval_172890 chrX 52835570 52835971 + 0 NA Intergenic Intergenic -42473 ENSMUSG00000082887.1 ENSMUSG00000082887 ENSMUST00000119119 Gm14607 processed_pseudogene Interval_142835 chr6 146298701 146298955 + 0 NA intron (ENSMUSG00000030287.15, intron 33 of 55) protein_coding-intron (ENSMUSG00000030287.15, intron 34 of 56) -27848 ENSMUSG00000107801.1 ENSMUSG00000107801 ENSMUST00000203251 Gm44086 TEC Interval_110901 chr4 9831120 9831811 + 0 NA Intergenic Intergenic -12907 ENSMUSG00000051279.2 ENSMUSG00000051279 ENSMUST00000057613 Gdf6 protein_coding Interval_106923 chr3 101947377 101947570 + 0 NA Intergenic Intergenic -23024 ENSMUSG00000033147.16 ENSMUSG00000033147 ENSMUST00000182040 Slc22a15 protein_coding Interval_68248 chr16 71068293 71068543 + 0 NA Intergenic Intergenic -62658 ENSMUSG00000116750.1 ENSMUSG00000116750 ENSMUST00000231591 4931420L22Rik lincRNA Interval_172033 chr9 123702510 123702723 + 0 NA intron (ENSMUSG00000025245.14, intron 4 of 6) protein_coding-intron (ENSMUSG00000025245.14, intron 7 of 9) 9736 ENSMUSG00000025245.14 ENSMUSG00000025245 ENSMUST00000165799 Lztfl1 protein_coding Interval_11875 chr1 186649493 186649931 + 0 NA intron (ENSMUSG00000039239.14, intron 3 of 7) protein_coding-intron (ENSMUSG00000039239.14, intron 2 of 6) -27030 ENSMUSG00000089045.1 ENSMUSG00000089045 ENSMUST00000158420 Gm26169 snoRNA Interval_21755 chr11 4143163 4144239 + 0 NA exon (ENSMUSG00000051427.14, exon 12 of 12) protein_coding-exon (ENSMUSG00000051427.14, exon 12 of 12) 4337 ENSMUSG00000093080.1 ENSMUSG00000093080 ENSMUST00000175339 Mir3060 miRNA Interval_132665 chr5 147037395 147038631 + 0 NA intron (ENSMUSG00000016520.7, intron 2 of 9) protein_coding-intron (ENSMUSG00000016520.7, intron 2 of 9) -18978 ENSMUSG00000016520.7 ENSMUSG00000016520 ENSMUST00000123092 Lnx2 protein_coding Interval_62528 chr15 94394599 94394884 + 0 NA TTS (ENSMUSG00000022449.14) protein_coding-TTS (ENSMUSG00000022449.14) 9517 ENSMUSG00000022449.14 ENSMUSG00000022449 ENSMUST00000128797 Adamts20 protein_coding Interval_115344 chr4 97628958 97629181 + 0 NA intron (ENSMUSG00000048747.14, intron 1 of 2) protein_coding-intron (ENSMUSG00000048747.14, intron 3 of 5) 61667 ENSMUSG00000048747.14 ENSMUSG00000048747 ENSMUST00000147069 E130114P18Rik protein_coding Interval_111237 chr4 15455019 15455252 + 0 NA Intergenic Intergenic -31231 ENSMUSG00000080869.1 ENSMUSG00000080869 ENSMUST00000118712 Gm11856 processed_pseudogene Interval_133430 chr6 4982679 4983225 + 0 NA intron (ENSMUSG00000032827.15, intron 1 of 17) protein_coding-intron (ENSMUSG00000032827.15, intron 2 of 15) 23969 ENSMUSG00000097396.1 ENSMUSG00000097396 ENSMUST00000180645 Gm26556 TEC Interval_74691 chr17 55985906 55987226 + 0 NA promoter-TSS (ENSMUSG00000011589.9) protein_coding-promoter-TSS (ENSMUSG00000011589.9) -8844 ENSMUSG00000011589.9 ENSMUSG00000011589 ENSMUST00000233361 Fsd1 protein_coding Interval_45047 chr13 51726141 51726340 + 0 NA intron (ENSMUSG00000021451.16, intron 3 of 3) protein_coding-intron (ENSMUSG00000021451.16, intron 2 of 15) -39054 ENSMUSG00000092648.1 ENSMUSG00000092648 ENSMUST00000174907 Gm23566 miRNA Interval_53421 chr14 57315628 57316574 + 0 NA intron (ENSMUSG00000021947.11, intron 2 of 3) protein_coding-intron (ENSMUSG00000021947.11, intron 3 of 7) 17384 ENSMUSG00000077497.1 ENSMUSG00000077497 ENSMUST00000104309 Gm23593 snoRNA Interval_61141 chr15 79472970 79473263 + 0 NA TTS (ENSMUSG00000106626.1) miRNA-TTS (ENSMUSG00000106626.1) 735 ENSMUSG00000106626.1 ENSMUSG00000106626 ENSMUST00000104762 Gm44302 miRNA Interval_108417 chr3 126915686 126917403 + 0 NA Intergenic Intergenic 50975 ENSMUSG00000105469.1 ENSMUSG00000105469 ENSMUST00000196018 A930036I15Rik TEC Interval_37780 chr12 71955587 71956138 + 0 NA intron (ENSMUSG00000034574.10, intron 15 of 24) protein_coding-intron (ENSMUSG00000034574.10, intron 15 of 25) 93397 ENSMUSG00000114155.1 ENSMUSG00000114155 ENSMUST00000221336 Gm7986 processed_pseudogene Interval_19963 chr10 111539745 111540248 + 0 NA Intergenic Intergenic 32300 ENSMUSG00000020205.8 ENSMUSG00000020205 ENSMUST00000186359 Phlda1 protein_coding Interval_13733 chr10 21547672 21548106 + 0 NA Intergenic Intergenic -68431 ENSMUSG00000050844.5 ENSMUSG00000050844 ENSMUST00000186635 1700020N01Rik protein_coding Interval_58624 chr15 36649850 36651281 + 0 NA intron (ENSMUSG00000115127.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000115127.1, intron 1 of 1) -20696 ENSMUSG00000115537.1 ENSMUSG00000115537 ENSMUST00000226628 Gm6704 processed_pseudogene Interval_103204 chr3 36670686 36671806 + 0 NA exon (ENSMUSG00000027716.13, exon 2 of 12) protein_coding-exon (ENSMUSG00000027716.13, exon 2 of 12) 18921 ENSMUSG00000027716.13 ENSMUSG00000027716 ENSMUST00000146475 Trpc3 protein_coding Interval_135148 chr6 36903593 36904301 + 0 NA intron (ENSMUSG00000038665.15, intron 27 of 32) protein_coding-intron (ENSMUSG00000038665.15, intron 27 of 32) -33101 ENSMUSG00000029837.2 ENSMUSG00000029837 ENSMUST00000031863 1700111E14Rik antisense Interval_56041 chr14 105099040 105099520 + 0 NA Intergenic Intergenic 15396 ENSMUSG00000091509.7 ENSMUSG00000091509 ENSMUST00000164319 Gm17066 processed_transcript Interval_29840 chr11 87193712 87195015 + 0 NA intron (ENSMUSG00000018548.15, intron 1 of 6) protein_coding-intron (ENSMUSG00000018548.15, intron 17 of 23) 4289 ENSMUSG00000018548.15 ENSMUSG00000018548 ENSMUST00000154138 Trim37 protein_coding Interval_48130 chr13 96477720 96478411 + 0 NA Intergenic Intergenic -6905 ENSMUSG00000047117.13 ENSMUSG00000047117 ENSMUST00000181613 Ankdd1b protein_coding Interval_122839 chr5 25964000 25964594 + 0 NA Intergenic Intergenic 7671 ENSMUSG00000104651.1 ENSMUSG00000104651 ENSMUST00000199646 Gm21168 processed_pseudogene Interval_55124 chr14 78324318 78324608 + 0 NA Intergenic Intergenic -13123 ENSMUSG00000092774.1 ENSMUSG00000092774 ENSMUST00000175033 Gm26197 rRNA Interval_61847 chr15 84629810 84630227 + 0 NA Intergenic Intergenic -39602 ENSMUSG00000036106.15 ENSMUSG00000036106 ENSMUST00000065499 Prr5 protein_coding Interval_57637 chr15 13018398 13018671 + 0 NA Intergenic Intergenic 37705 ENSMUSG00000089564.1 ENSMUSG00000089564 ENSMUST00000158939 Gm24664 rRNA Interval_65800 chr16 28928402 28931341 + 0 NA promoter-TSS (ENSMUSG00000051065.9) protein_coding-promoter-TSS (ENSMUSG00000051065.9) 21484 ENSMUSG00000116861.1 ENSMUSG00000116861 ENSMUST00000232466 Gm8253 processed_pseudogene Interval_162892 chr9 11859884 11860116 + 0 NA Intergenic Intergenic 118249 ENSMUSG00000111111.1 ENSMUSG00000111111 ENSMUST00000217391 Gm47037 TEC Interval_23858 chr11 27180097 27181391 + 0 NA Intergenic Intergenic -93609 ENSMUSG00000088654.1 ENSMUSG00000088654 ENSMUST00000158029 Gm24850 snoRNA Interval_74595 chr17 53594736 53597662 + 0 NA intron (ENSMUSG00000000708.14, intron 1 of 5) protein_coding-intron (ENSMUSG00000000708.14, intron 1 of 17) 2464 ENSMUSG00000096517.1 ENSMUSG00000096517 ENSMUST00000180049 Gm6919 processed_pseudogene Interval_138312 chr6 87119232 87120464 + 0 NA Intergenic Intergenic 15035 ENSMUSG00000090891.3 ENSMUSG00000090891 ENSMUST00000205257 D6Ertd527e protein_coding Interval_81670 chr18 63034179 63034430 + 0 NA intron (ENSMUSG00000041482.17, intron 38 of 50) protein_coding-intron (ENSMUSG00000041482.17, intron 40 of 53) 56457 ENSMUSG00000024581.13 ENSMUSG00000024581 ENSMUST00000236914 Napg protein_coding Interval_37340 chr12 65225316 65227310 + 0 NA exon (ENSMUSG00000035560.5, exon 1 of 2) protein_coding-exon (ENSMUSG00000035560.5, exon 1 of 2) 245 ENSMUSG00000035560.5 ENSMUSG00000035560 ENSMUST00000222822 Wdr20rt protein_coding Interval_157100 chr8 65184530 65185223 + 0 NA TTS (ENSMUSG00000110283.1) processed_pseudogene-TTS (ENSMUSG00000110283.1) 632 ENSMUSG00000110283.1 ENSMUSG00000110283 ENSMUST00000211021 Gm45249 processed_pseudogene Interval_103073 chr3 35035129 35035472 + 0 NA Intergenic Intergenic -112649 ENSMUSG00000098862.1 ENSMUSG00000098862 ENSMUST00000183357 Mir6378 miRNA Interval_31362 chr11 100265358 100265627 + 0 NA intron (ENSMUSG00000053654.7, intron 1 of 4) protein_coding-intron (ENSMUSG00000053654.7, intron 4 of 7) 486 ENSMUSG00000053654.7 ENSMUSG00000053654 ENSMUST00000017270 Krt42 protein_coding Interval_148259 chr7 80143513 80145006 + 0 NA Intergenic Intergenic -10910 ENSMUSG00000108757.1 ENSMUSG00000108757 ENSMUST00000205955 Gm45202 lincRNA Interval_41151 chr12 111512004 111513195 + 0 NA Intergenic Intergenic -12977 ENSMUSG00000113029.1 ENSMUSG00000113029 ENSMUST00000220837 Gm40578 antisense Interval_138549 chr6 89200873 89201256 + 0 NA promoter-TSS (ENSMUSG00000108221.1) processed_pseudogene-promoter-TSS (ENSMUSG00000108221.1) -189 ENSMUSG00000108221.1 ENSMUSG00000108221 ENSMUST00000203134 Gm44203 processed_pseudogene Interval_117201 chr4 120538058 120539361 + 0 NA Intergenic Intergenic 6358 ENSMUSG00000028633.7 ENSMUSG00000028633 ENSMUST00000140891 Ctps protein_coding Interval_118525 chr4 132273951 132274922 + 0 NA promoter-TSS (ENSMUSG00000028899.11) protein_coding-promoter-TSS (ENSMUSG00000028899.11) 23 ENSMUSG00000028899.11 ENSMUSG00000028899 ENSMUST00000105963 Taf12 protein_coding Interval_44135 chr13 41130701 41131371 + 0 NA intron (ENSMUSG00000038651.15, intron 7 of 28) protein_coding-intron (ENSMUSG00000038651.15, intron 7 of 28) -22352 ENSMUSG00000038651.15 ENSMUSG00000038651 ENSMUST00000145810 Sycp2l protein_coding Interval_130644 chr5 129410157 129410409 + 0 NA Intergenic Intergenic 46163 ENSMUSG00000104681.1 ENSMUSG00000104681 ENSMUST00000199076 Gm43001 lincRNA Interval_174412 chrX 151827705 151828062 + 0 NA intron (ENSMUSG00000025261.18, intron 4 of 4) protein_coding-intron (ENSMUSG00000025261.18, intron 2 of 82) -28923 ENSMUSG00000025261.18 ENSMUSG00000025261 ENSMUST00000139245 Huwe1 protein_coding Interval_69919 chr17 3204138 3204577 + 0 NA intron (ENSMUSG00000116858.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000116858.1, intron 1 of 2) -26914 ENSMUSG00000116858.1 ENSMUSG00000116858 ENSMUST00000232042 Gm49797 lincRNA Interval_29341 chr11 83322676 83322867 + 0 NA intron (ENSMUSG00000035152.14, intron 3 of 20) protein_coding-intron (ENSMUSG00000035152.14, intron 4 of 21) 23747 ENSMUSG00000035152.14 ENSMUSG00000035152 ENSMUST00000176523 Ap2b1 protein_coding Interval_18669 chr10 88980873 88981089 + 0 NA TTS (ENSMUSG00000035189.17) protein_coding-TTS (ENSMUSG00000035189.17) 94989 ENSMUSG00000020062.7 ENSMUSG00000020062 ENSMUST00000020255 Slc5a8 protein_coding Interval_58431 chr15 34480048 34480732 + 0 NA Intergenic Intergenic -1317 ENSMUSG00000115300.1 ENSMUSG00000115300 ENSMUST00000226218 Gm49188 TEC Interval_11861 chr1 186513482 186514353 + 0 NA intron (ENSMUSG00000103690.1, intron 2 of 2) lincRNA-intron (ENSMUSG00000103690.1, intron 1 of 1) 44764 ENSMUSG00000103690.1 ENSMUSG00000103690 ENSMUST00000195454 A730004F24Rik lincRNA Interval_119459 chr4 137733536 137733746 + 0 NA Intergenic Intergenic -27035 ENSMUSG00000087476.1 ENSMUSG00000087476 ENSMUST00000135358 Rap1gapos antisense Interval_1796 chr1 33831961 33832163 + 0 NA Intergenic Intergenic 6618 ENSMUSG00000081402.4 ENSMUSG00000081402 ENSMUST00000117459 Gm15455 processed_pseudogene Interval_60738 chr15 76449366 76449831 + 0 NA promoter-TSS (ENSMUSG00000022558.16) protein_coding-promoter-TSS (ENSMUSG00000022558.16) 6430 ENSMUSG00000022557.11 ENSMUSG00000022557 ENSMUST00000229132 Bop1 protein_coding Interval_127253 chr5 101888065 101888662 + 0 NA intron (ENSMUSG00000043940.15, intron 35 of 64) protein_coding-intron (ENSMUSG00000043940.15, intron 38 of 66) 50911 ENSMUSG00000092354.7 ENSMUSG00000092354 ENSMUST00000174312 Gm20548 antisense Interval_68314 chr16 73004579 73004827 + 0 NA TTS (ENSMUSG00000022883.11) protein_coding-TTS (ENSMUSG00000022883.11) 28354 ENSMUSG00000022883.11 ENSMUSG00000022883 ENSMUST00000232432 Robo1 protein_coding Interval_47763 chr13 92438667 92440647 + 0 NA exon (ENSMUSG00000045034.12, exon 5 of 5) protein_coding-exon (ENSMUSG00000045034.12, exon 5 of 5) -12433 ENSMUSG00000090907.1 ENSMUSG00000090907 ENSMUST00000163690 C030017D09Rik antisense Interval_2780 chr1 44745444 44745926 + 0 NA promoter-TSS (ENSMUSG00000101701.1) antisense-promoter-TSS (ENSMUSG00000101701.1) -736 ENSMUSG00000101701.1 ENSMUSG00000101701 ENSMUST00000186732 4930521E06Rik antisense Interval_13622 chr10 20238029 20238578 + 0 NA intron (ENSMUSG00000019996.17, intron 3 of 3) protein_coding-intron (ENSMUSG00000019996.17, intron 3 of 17) 29813 ENSMUSG00000111356.1 ENSMUSG00000111356 ENSMUST00000216127 Rpl32l processed_pseudogene Interval_107068 chr3 103278774 103280739 + 0 NA promoter-TSS (ENSMUSG00000033014.12) protein_coding-promoter-TSS (ENSMUSG00000033014.12) -32493 ENSMUSG00000104976.1 ENSMUSG00000104976 ENSMUST00000200621 Gm43060 processed_pseudogene Interval_160302 chr8 107885786 107887127 + 0 NA Intergenic Intergenic 16771 ENSMUSG00000110625.1 ENSMUSG00000110625 ENSMUST00000212462 5033426E14Rik lincRNA Interval_158032 chr8 78148187 78149131 + 0 NA Intergenic Intergenic 40699 ENSMUSG00000109948.1 ENSMUSG00000109948 ENSMUST00000210236 Gm45288 processed_pseudogene Interval_133839 chr6 13157028 13157242 + 0 NA intron (ENSMUSG00000079679.3, intron 29 of 29) protein_coding-intron (ENSMUSG00000079679.3, intron 29 of 29) 19927 ENSMUSG00000079679.3 ENSMUSG00000079679 ENSMUST00000204339 Vwde protein_coding Interval_171912 chr9 122474387 122474873 + 0 NA Intergenic Intergenic -4120 ENSMUSG00000110725.1 ENSMUSG00000110725 ENSMUST00000214531 Gm47129 processed_pseudogene Interval_103727 chr3 52088535 52089152 + 0 NA intron (ENSMUSG00000061143.15, intron 1 of 4) protein_coding-intron (ENSMUSG00000061143.15, intron 1 of 4) -15456 ENSMUSG00000102808.1 ENSMUSG00000102808 ENSMUST00000194956 5430420F09Rik TEC Interval_163747 chr9 25232573 25234060 + 0 NA Intergenic Intergenic -4247 ENSMUSG00000111459.1 ENSMUSG00000111459 ENSMUST00000213430 Gm8031 processed_pseudogene Interval_150265 chr7 109104190 109105137 + 0 NA Intergenic Intergenic -28421 ENSMUSG00000094199.1 ENSMUSG00000094199 ENSMUST00000179144 Gm25450 snRNA Interval_72805 chr17 32269351 32269568 + 0 NA intron (ENSMUSG00000024002.18, intron 1 of 10) protein_coding-intron (ENSMUSG00000024002.18, intron 1 of 19) 14674 ENSMUSG00000024002.18 ENSMUSG00000024002 ENSMUST00000230982 Brd4 protein_coding Interval_143676 chr7 14336411 14336755 + 0 NA Intergenic Intergenic -3026 ENSMUSG00000099216.1 ENSMUSG00000099216 ENSMUST00000184356 Obox8 protein_coding Interval_171004 chr9 113653748 113654003 + 0 NA TTS (ENSMUSG00000032504.15) protein_coding-TTS (ENSMUSG00000032504.15) -11821 ENSMUSG00000111364.1 ENSMUSG00000111364 ENSMUST00000213455 Gm36745 lincRNA Interval_139659 chr6 106163349 106163555 + 0 NA intron (ENSMUSG00000064293.14, intron 2 of 3) protein_coding-intron (ENSMUSG00000064293.14, intron 1 of 15) -485871 ENSMUSG00000085067.2 ENSMUSG00000085067 ENSMUST00000142962 Gm15631 lincRNA Interval_2970 chr1 51723823 51724055 + 0 NA intron (ENSMUSG00000101741.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000101741.1, intron 1 of 1) -26039 ENSMUSG00000101741.1 ENSMUSG00000101741 ENSMUST00000186769 Gm28055 lincRNA Interval_75945 chr17 73447771 73448156 + 0 NA exon (ENSMUSG00000117088.1, exon 1 of 1) processed_pseudogene-exon (ENSMUSG00000117088.1, exon 1 of 1) 309 ENSMUSG00000117088.1 ENSMUSG00000117088 ENSMUST00000232896 Gm49875 processed_pseudogene Interval_52431 chr14 46349217 46349490 + 0 NA Intergenic Intergenic -31774 ENSMUSG00000079261.2 ENSMUSG00000079261 ENSMUST00000147092 Gm15217 protein_coding Interval_62587 chr15 95024752 95024998 + 0 NA intron (ENSMUSG00000063296.5, intron 6 of 7) protein_coding-intron (ENSMUSG00000063296.5, intron 6 of 7) -37737 ENSMUSG00000077447.1 ENSMUSG00000077447 ENSMUST00000104259 Gm23129 snoRNA Interval_22712 chr11 13702677 13702925 + 0 NA Intergenic Intergenic -459278 ENSMUSG00000081631.1 ENSMUSG00000081631 ENSMUST00000121451 Gm12005 processed_pseudogene Interval_127473 chr5 104219961 104220269 + 0 NA Intergenic Intergenic 17502 ENSMUSG00000029307.7 ENSMUSG00000029307 ENSMUST00000066708 Dmp1 protein_coding Interval_155115 chr8 26702462 26702803 + 0 NA Intergenic Intergenic -34326 ENSMUSG00000109680.1 ENSMUSG00000109680 ENSMUST00000211305 Gm32098 lincRNA Interval_137458 chr6 72562708 72563436 + 0 NA TTS (ENSMUSG00000056737.14) protein_coding-TTS (ENSMUSG00000056737.14) 13614 ENSMUSG00000056737.14 ENSMUSG00000056737 ENSMUST00000127770 Capg protein_coding Interval_172351 chrX 13344445 13344920 + 0 NA Intergenic Intergenic -17663 ENSMUSG00000080914.1 ENSMUSG00000080914 ENSMUST00000117402 Gm7129 processed_pseudogene Interval_59750 chr15 59027363 59028149 + 0 NA intron (ENSMUSG00000022353.10, intron 3 of 14) protein_coding-intron (ENSMUSG00000022353.10, intron 3 of 14) 43620 ENSMUSG00000115062.1 ENSMUSG00000115062 ENSMUST00000226216 4930544F09Rik antisense Interval_164587 chr9 39531044 39531865 + 0 NA Intergenic Intergenic 6498 ENSMUSG00000077427.1 ENSMUSG00000077427 ENSMUST00000104239 Gm24278 snoRNA Interval_134970 chr6 34205183 34206079 + 0 NA Intergenic Intergenic 26399 ENSMUSG00000087613.1 ENSMUSG00000087613 ENSMUST00000145644 Gm13855 lincRNA Interval_35603 chr12 25239980 25240169 + 0 NA Intergenic Intergenic -42521 ENSMUSG00000113745.1 ENSMUSG00000113745 ENSMUST00000221995 Gm19340 processed_pseudogene Interval_122092 chr5 16868978 16870278 + 0 NA intron (ENSMUSG00000109903.1, intron 18 of 20) protein_coding-intron (ENSMUSG00000109903.1, intron 18 of 20) 33714 ENSMUSG00000099854.1 ENSMUSG00000099854 ENSMUST00000186866 Gm28710 lincRNA Interval_11228 chr1 180312809 180314349 + 0 NA Intergenic Intergenic 14605 ENSMUSG00000055676.4 ENSMUSG00000055676 ENSMUST00000192714 Gm5069 transcribed_processed_pseudogene Interval_42728 chr13 18618341 18618828 + 0 NA Intergenic Intergenic 26765 ENSMUSG00000114118.1 ENSMUSG00000114118 ENSMUST00000221183 Gm48829 lincRNA Interval_56155 chr14 108219155 108219359 + 0 NA Intergenic Intergenic -160307 ENSMUSG00000092834.1 ENSMUSG00000092834 ENSMUST00000175093 Gm24818 miRNA Interval_90534 chr2 31009900 31010116 + 0 NA intron (ENSMUSG00000026854.16, intron 9 of 23) protein_coding-intron (ENSMUSG00000026854.16, intron 10 of 24) 27674 ENSMUSG00000026854.16 ENSMUSG00000026854 ENSMUST00000127776 Usp20 protein_coding Interval_162266 chr8 126538505 126540060 + 0 NA Intergenic Intergenic -27688 ENSMUSG00000097060.1 ENSMUSG00000097060 ENSMUST00000181773 Gm26759 antisense Interval_26017 chr11 53500394 53501247 + 0 NA promoter-TSS (ENSMUSG00000085718.2) processed_pseudogene-promoter-TSS (ENSMUSG00000085718.2) -364 ENSMUSG00000085718.2 ENSMUSG00000085718 ENSMUST00000119147 Rpl9-ps3 processed_pseudogene Interval_145759 chr7 38106868 38108375 + 0 NA promoter-TSS (ENSMUSG00000002068.16) protein_coding-promoter-TSS (ENSMUSG00000002068.16) -8252 ENSMUSG00000002068.16 ENSMUSG00000002068 ENSMUST00000124979 Ccne1 protein_coding Interval_171964 chr9 122984363 122985155 + 0 NA intron (ENSMUSG00000036768.6, intron 1 of 7) protein_coding-intron (ENSMUSG00000036768.6, intron 10 of 34) -8368 ENSMUSG00000111617.1 ENSMUSG00000111617 ENSMUST00000217243 Gm47148 TEC Interval_144100 chr7 19415188 19415769 + 0 NA TTS (ENSMUSG00000030399.2) protein_coding-TTS (ENSMUSG00000030399.2) 4453 ENSMUSG00000030399.2 ENSMUSG00000030399 ENSMUST00000003643 Ckm protein_coding Interval_36000 chr12 33197234 33197675 + 0 NA intron (ENSMUSG00000079143.3, intron 3 of 4) protein_coding-intron (ENSMUSG00000020564.17, intron 1 of 2) 31400 ENSMUSG00000079143.3 ENSMUSG00000079143 ENSMUST00000155877 Atxn7l1os1 antisense Interval_68433 chr16 76431956 76432660 + 0 NA intron (ENSMUSG00000109338.2, intron 3 of 5) lincRNA-intron (ENSMUSG00000109338.2, intron 3 of 5) -28656 ENSMUSG00000050299.8 ENSMUSG00000050299 ENSMUST00000052867 Gm9843 processed_pseudogene Interval_55503 chr14 89403134 89403334 + 0 NA Intergenic Intergenic 10158 ENSMUSG00000088405.1 ENSMUSG00000088405 ENSMUST00000157780 Gm25886 snRNA Interval_143536 chr7 12289091 12290405 + 0 NA Intergenic Intergenic -10682 ENSMUSG00000058132.5 ENSMUSG00000058132 ENSMUST00000191002 Vmn1r82 protein_coding Interval_140068 chr6 113772782 113772998 + 0 NA intron (ENSMUSG00000030302.16, intron 11 of 19) protein_coding-intron (ENSMUSG00000030302.16, intron 11 of 19) 26794 ENSMUSG00000108297.1 ENSMUSG00000108297 ENSMUST00000204957 Gm44167 sense_intronic Interval_133524 chr6 6143659 6143980 + 0 NA intron (ENSMUSG00000015112.15, intron 4 of 17) protein_coding-intron (ENSMUSG00000015112.15, intron 4 of 17) 30132 ENSMUSG00000015112.15 ENSMUSG00000015112 ENSMUST00000177698 Slc25a13 protein_coding Interval_132474 chr5 145172907 145173129 + 0 NA intron (ENSMUSG00000029625.16, intron 2 of 7) protein_coding-intron (ENSMUSG00000029625.16, intron 2 of 6) 5764 ENSMUSG00000029625.16 ENSMUSG00000029625 ENSMUST00000160437 Cpsf4 protein_coding Interval_75561 chr17 68049081 68049468 + 0 NA intron (ENSMUSG00000117243.1, intron 2 of 3) lincRNA-intron (ENSMUSG00000117243.1, intron 2 of 3) 65112 ENSMUSG00000117208.1 ENSMUSG00000117208 ENSMUST00000233735 Gm49945 lincRNA Interval_4669 chr1 75909363 75909705 + 0 NA Intergenic Intergenic 109222 ENSMUSG00000099996.1 ENSMUSG00000099996 ENSMUST00000188786 Gm29065 lincRNA Interval_69330 chr16 92245872 92246249 + 0 NA Intergenic Intergenic -38572 ENSMUSG00000116878.1 ENSMUSG00000116878 ENSMUST00000231551 Gm29880 processed_transcript Interval_121178 chr4 153827591 153828772 + 0 NA Intergenic Intergenic -48203 ENSMUSG00000077519.1 ENSMUSG00000077519 ENSMUST00000104331 Gm25880 snoRNA Interval_153392 chr7 144366272 144366983 + 0 NA intron (ENSMUSG00000037541.22, intron 4 of 12) protein_coding-intron (ENSMUSG00000037541.22, intron 2 of 9) 40306 ENSMUSG00000085745.1 ENSMUSG00000085745 ENSMUST00000125355 Gm14372 antisense Interval_108620 chr3 129598623 129598938 + 0 NA intron (ENSMUSG00000041220.10, intron 1 of 2) protein_coding-intron (ENSMUSG00000041220.10, intron 2 of 4) 60639 ENSMUSG00000106092.1 ENSMUSG00000106092 ENSMUST00000200283 Gm43072 TEC Interval_81307 chr18 57803915 57804755 + 0 NA Intergenic Intergenic -11975 ENSMUSG00000118391.1 ENSMUSG00000118391 ENSMUST00000236807 Gm19519 antisense Interval_159508 chr8 95158539 95159114 + 0 NA intron (ENSMUSG00000031788.14, intron 1 of 4) protein_coding-intron (ENSMUSG00000031788.14, intron 1 of 4) 20516 ENSMUSG00000110475.1 ENSMUSG00000110475 ENSMUST00000212925 Gm31036 antisense Interval_160049 chr8 106022268 106022988 + 0 NA intron (ENSMUSG00000031901.12, intron 2 of 3) protein_coding-intron (ENSMUSG00000031901.12, intron 2 of 15) -10746 ENSMUSG00000045538.6 ENSMUSG00000045538 ENSMUST00000058579 Ddx28 protein_coding Interval_89651 chr2 24012989 24013342 + 0 NA intron (ENSMUSG00000026986.14, intron 5 of 6) protein_coding-intron (ENSMUSG00000026986.14, intron 5 of 6) 35914 ENSMUSG00000026986.14 ENSMUSG00000026986 ENSMUST00000114497 Hnmt protein_coding Interval_125000 chr5 63640065 63641175 + 0 NA Intergenic Intergenic 10274 ENSMUSG00000104868.1 ENSMUSG00000104868 ENSMUST00000067917 Gm9954 TEC Interval_4393 chr1 73758489 73758725 + 0 NA intron (ENSMUSG00000101344.1, intron 7 of 7) lincRNA-intron (ENSMUSG00000101344.1, intron 7 of 7) -5103 ENSMUSG00000088666.1 ENSMUSG00000088666 ENSMUST00000158041 Gm25329 rRNA Interval_10392 chr1 170298837 170299040 + 0 NA exon (ENSMUSG00000102752.1, exon 3 of 3) protein_coding-exon (ENSMUSG00000102752.1, exon 3 of 3) 7394 ENSMUSG00000102752.1 ENSMUSG00000102752 ENSMUST00000179801 Gm7694 protein_coding Interval_3689 chr1 60852216 60854965 + 0 NA Intergenic Intergenic -26748 ENSMUSG00000102549.1 ENSMUSG00000102549 ENSMUST00000193735 Gm38137 TEC Interval_94637 chr2 92910542 92910798 + 0 NA intron (ENSMUSG00000086980.1, intron 1 of 1) processed_transcript-intron (ENSMUSG00000086980.1, intron 1 of 1) 2993 ENSMUSG00000086980.1 ENSMUSG00000086980 ENSMUST00000123263 Gm13791 processed_transcript Interval_38642 chr12 80760115 80760779 + 0 NA exon (ENSMUSG00000062961.7, exon 1 of 2) protein_coding-exon (ENSMUSG00000062961.7, exon 1 of 2) 240 ENSMUSG00000062961.7 ENSMUSG00000062961 ENSMUST00000073251 Ccdc177 protein_coding Interval_147829 chr7 73871850 73873456 + 0 NA Intergenic Intergenic 53063 ENSMUSG00000105381.1 ENSMUSG00000105381 ENSMUST00000199151 Mir7234 miRNA Interval_74954 chr17 57973559 57974164 + 0 NA intron (ENSMUSG00000038048.8, intron 3 of 23) protein_coding-intron (ENSMUSG00000038048.8, intron 3 of 23) -134640 ENSMUSG00000071052.4 ENSMUSG00000071052 ENSMUST00000095218 Rpl7a-ps5 processed_pseudogene Interval_85738 chr19 30205249 30206390 + 0 NA Intergenic Intergenic -27123 ENSMUSG00000024863.6 ENSMUSG00000024863 ENSMUST00000025797 Mbl2 protein_coding Interval_111143 chr4 13124792 13125579 + 0 NA Intergenic Intergenic 49045 ENSMUSG00000086227.1 ENSMUSG00000086227 ENSMUST00000139614 Gm11820 lincRNA Interval_165016 chr9 43933735 43934915 + 0 NA intron (ENSMUSG00000111758.1, intron 2 of 2) lincRNA-intron (ENSMUSG00000111758.1, intron 2 of 2) -28323 ENSMUSG00000088044.1 ENSMUSG00000088044 ENSMUST00000157419 Gm23326 snRNA Interval_77140 chr17 86814228 86814710 + 0 NA intron (ENSMUSG00000024140.10, intron 6 of 15) protein_coding-intron (ENSMUSG00000024140.10, intron 6 of 15) -9864 ENSMUSG00000024140.10 ENSMUSG00000024140 ENSMUST00000234447 Epas1 protein_coding Interval_126728 chr5 92357927 92358544 + 0 NA intron (ENSMUSG00000034842.16, intron 2 of 3) protein_coding-intron (ENSMUSG00000034842.16, intron 2 of 9) -5669 ENSMUSG00000082068.1 ENSMUSG00000082068 ENSMUST00000120958 Gm2673 processed_pseudogene Interval_124055 chr5 37893049 37894363 + 0 NA promoter-TSS (ENSMUSG00000106718.1) lincRNA-promoter-TSS (ENSMUSG00000106718.1) -644 ENSMUSG00000106718.1 ENSMUSG00000106718 ENSMUST00000201327 Gm20052 lincRNA Interval_100937 chr2 173476925 173477740 + 0 NA Intergenic Intergenic -45254 ENSMUSG00000027518.3 ENSMUSG00000027518 ENSMUST00000029023 1700021F07Rik protein_coding Interval_155467 chr8 33766764 33767008 + 0 NA intron (ENSMUSG00000031585.13, intron 1 of 2) protein_coding-intron (ENSMUSG00000031585.13, intron 6 of 7) -19116 ENSMUSG00000094500.2 ENSMUSG00000094500 ENSMUST00000179364 Smim18 protein_coding Interval_100593 chr2 170323686 170324661 + 0 NA Intergenic Intergenic 25567 ENSMUSG00000013523.13 ENSMUSG00000013523 ENSMUST00000145920 Bcas1 protein_coding Interval_154804 chr8 23492604 23493206 + 0 NA Intergenic Intergenic 81403 ENSMUSG00000031548.7 ENSMUSG00000031548 ENSMUST00000033952 Sfrp1 protein_coding Interval_113357 chr4 53789065 53789778 + 0 NA TTS (ENSMUSG00000028417.3) protein_coding-TTS (ENSMUSG00000028417.3) 2035 ENSMUSG00000084403.1 ENSMUSG00000084403 ENSMUST00000117914 Rps15a-ps8 processed_pseudogene Interval_6418 chr1 107589996 107591205 + 0 NA intron (ENSMUSG00000026315.13, intron 1 of 6) protein_coding-intron (ENSMUSG00000026315.13, intron 1 of 6) 554 ENSMUSG00000026315.13 ENSMUSG00000026315 ENSMUST00000123086 Serpinb8 protein_coding Interval_103602 chr3 51115319 51116881 + 0 NA Intergenic Intergenic 12440 ENSMUSG00000103464.1 ENSMUSG00000103464 ENSMUST00000194318 Gm38246 lincRNA Interval_100320 chr2 168367404 168367924 + 0 NA Intergenic Intergenic 31964 ENSMUSG00000064961.1 ENSMUSG00000064961 ENSMUST00000083027 Gm22704 snoRNA Interval_39657 chr12 91829844 91830160 + 0 NA intron (ENSMUSG00000020964.14, intron 6 of 20) protein_coding-intron (ENSMUSG00000020964.14, intron 6 of 20) 19155 ENSMUSG00000020964.14 ENSMUSG00000020964 ENSMUST00000169843 Sel1l protein_coding Interval_61172 chr15 79650329 79652050 + 0 NA intron (ENSMUSG00000042564.13, intron 1 of 1) protein_coding-intron (ENSMUSG00000042564.13, intron 1 of 8) 7735 ENSMUSG00000042564.13 ENSMUSG00000042564 ENSMUST00000231126 Fam227a protein_coding Interval_100052 chr2 166758179 166758710 + 0 NA Intergenic Intergenic -10301 ENSMUSG00000088063.1 ENSMUSG00000088063 ENSMUST00000157438 Gm24477 snRNA Interval_50380 chr14 12283564 12285007 + 0 NA promoter-TSS (ENSMUSG00000033111.16) protein_coding-promoter-TSS (ENSMUSG00000033111.16) 42 ENSMUSG00000033111.16 ENSMUSG00000033111 ENSMUST00000225052 3830406C13Rik protein_coding Interval_21403 chr10 128385819 128386307 + 0 NA TTS (ENSMUSG00000014498.9) protein_coding-TTS (ENSMUSG00000014498.9) -2769 ENSMUSG00000106600.1 ENSMUSG00000106600 ENSMUST00000198839 Mir6915 miRNA Interval_28470 chr11 76196361 76197164 + 0 NA intron (ENSMUSG00000069808.13, intron 1 of 4) protein_coding-intron (ENSMUSG00000069808.13, intron 1 of 2) -5339 ENSMUSG00000069808.13 ENSMUSG00000069808 ENSMUST00000169560 Fam57a protein_coding Interval_138793 chr6 91913963 91914522 + 0 NA promoter-TSS (ENSMUSG00000034063.8) protein_coding-promoter-TSS (ENSMUSG00000034063.8) 11433 ENSMUSG00000034063.8 ENSMUSG00000034063 ENSMUST00000205569 4930590J08Rik protein_coding Interval_32994 chr11 113567671 113568550 + 0 NA intron (ENSMUSG00000041654.15, intron 1 of 5) protein_coding-intron (ENSMUSG00000041654.15, intron 1 of 5) -2331 ENSMUSG00000041654.15 ENSMUSG00000041654 ENSMUST00000123153 Slc39a11 protein_coding Interval_68678 chr16 84631085 84631303 + 0 NA Intergenic Intergenic -11066 ENSMUSG00000084746.1 ENSMUSG00000084746 ENSMUST00000122797 Gm25292 misc_RNA Interval_155004 chr8 25622117 25622308 + 0 NA intron (ENSMUSG00000054823.16, intron 1 of 9) protein_coding-intron (ENSMUSG00000054823.16, intron 1 of 7) -9738 ENSMUSG00000088037.1 ENSMUSG00000088037 ENSMUST00000157412 Gm24992 snoRNA Interval_154683 chr8 22574179 22574604 + 0 NA Intergenic Intergenic 11730 ENSMUSG00000008892.12 ENSMUSG00000008892 ENSMUST00000211222 Vdac3 protein_coding Interval_145208 chr7 30659018 30659325 + 0 NA promoter-TSS (ENSMUSG00000078762.10) protein_coding-promoter-TSS (ENSMUSG00000078762.10) -209 ENSMUSG00000078762.10 ENSMUSG00000078762 ENSMUST00000142741 Haus5 protein_coding Interval_94300 chr2 87681940 87683285 + 0 NA Intergenic Intergenic -8948 ENSMUSG00000075153.2 ENSMUSG00000075153 ENSMUST00000099853 Olfr1135 protein_coding Interval_171031 chr9 113813262 113813584 + 0 NA exon (ENSMUSG00000033392.16, exon 2 of 2) protein_coding-exon (ENSMUSG00000033392.16, exon 2 of 2) -37125 ENSMUSG00000087992.1 ENSMUSG00000087992 ENSMUST00000157367 Gm25059 snoRNA Interval_124787 chr5 54024511 54024793 + 0 NA intron (ENSMUSG00000039156.19, intron 1 of 12) protein_coding-intron (ENSMUSG00000039156.19, intron 1 of 11) 70428 ENSMUSG00000107105.1 ENSMUSG00000107105 ENSMUST00000201566 Gm15820 processed_pseudogene Interval_52132 chr14 36951758 36952757 + 0 NA intron (ENSMUSG00000058690.14, intron 1 of 10) protein_coding-intron (ENSMUSG00000058690.14, intron 1 of 9) -43076 ENSMUSG00000058690.14 ENSMUSG00000058690 ENSMUST00000182635 Ccser2 protein_coding Interval_26456 chr11 57962271 57963201 + 0 NA Intergenic Intergenic -6606 ENSMUSG00000089280.1 ENSMUSG00000089280 ENSMUST00000158655 Gm26025 misc_RNA Interval_51943 chr14 34151967 34152812 + 0 NA promoter-TSS (ENSMUSG00000048337.3) protein_coding-promoter-TSS (ENSMUSG00000048337.3) 100 ENSMUSG00000048337.3 ENSMUSG00000048337 ENSMUST00000052164 Npy4r protein_coding Interval_112672 chr4 43974954 43977071 + 0 NA intron (ENSMUSG00000028480.14, intron 2 of 2) protein_coding-intron (ENSMUSG00000028480.14, intron 4 of 4) -7471 ENSMUSG00000070999.2 ENSMUSG00000070999 ENSMUST00000095107 Ccin protein_coding Interval_68791 chr16 86722393 86722717 + 0 NA Intergenic Intergenic -36344 ENSMUSG00000116906.1 ENSMUSG00000116906 ENSMUST00000232053 Gm49572 processed_pseudogene Interval_25884 chr11 52330618 52331246 + 0 NA Intergenic Intergenic -43168 ENSMUSG00000020402.11 ENSMUSG00000020402 ENSMUST00000153339 Vdac1 protein_coding Interval_142043 chr6 136715756 136717085 + 0 NA intron (ENSMUSG00000042638.14, intron 18 of 25) protein_coding-intron (ENSMUSG00000042638.14, intron 19 of 26) -21137 ENSMUSG00000107850.1 ENSMUSG00000107850 ENSMUST00000203395 Gm4714 processed_pseudogene Interval_35748 chr12 28829392 28829795 + 0 NA intron (ENSMUSG00000036613.8, intron 4 of 8) protein_coding-intron (ENSMUSG00000036613.8, intron 5 of 9) 19455 ENSMUSG00000113886.1 ENSMUSG00000113886 ENSMUST00000222829 Gm48905 sense_intronic Interval_132257 chr5 143679572 143680243 + 0 NA intron (ENSMUSG00000018001.18, intron 1 of 12) protein_coding-intron (ENSMUSG00000018001.18, intron 1 of 12) 48110 ENSMUSG00000051306.7 ENSMUSG00000051306 ENSMUST00000129606 Usp42 protein_coding Interval_2914 chr1 49726606 49727047 + 0 NA Intergenic Intergenic -147240 ENSMUSG00000099882.1 ENSMUSG00000099882 ENSMUST00000186262 Gm28388 processed_pseudogene Interval_108878 chr3 132927569 132928417 + 0 NA intron (ENSMUSG00000040998.18, intron 2 of 10) protein_coding-intron (ENSMUSG00000040998.18, intron 3 of 12) -11877 ENSMUSG00000089431.1 ENSMUSG00000089431 ENSMUST00000158806 Gm23196 snRNA Interval_50294 chr14 11705046 11705468 + 0 NA intron (ENSMUSG00000021745.14, intron 1 of 3) protein_coding-intron (ENSMUSG00000021745.14, intron 1 of 29) -62686 ENSMUSG00000114310.1 ENSMUSG00000114310 ENSMUST00000225152 Gm48602 TEC Interval_133552 chr6 6564771 6564960 + 0 NA intron (ENSMUSG00000042541.10, intron 1 of 2) protein_coding-intron (ENSMUSG00000042541.10, intron 1 of 2) 13798 ENSMUSG00000042541.10 ENSMUSG00000042541 ENSMUST00000205180 Sem1 protein_coding Interval_36398 chr12 43294662 43294851 + 0 NA Intergenic Intergenic -11387 ENSMUSG00000112904.1 ENSMUSG00000112904 ENSMUST00000217732 Gm47030 lincRNA Interval_67214 chr16 44486980 44487883 + 0 NA intron (ENSMUSG00000022687.12, intron 16 of 18) protein_coding-intron (ENSMUSG00000022687.12, intron 16 of 18) 70698 ENSMUSG00000093046.1 ENSMUSG00000093046 ENSMUST00000175305 Mir3081 miRNA Interval_131159 chr5 135483277 135484347 + 0 NA intron (ENSMUSG00000039959.13, intron 1 of 1) protein_coding-intron (ENSMUSG00000039959.13, intron 1 of 30) -10393 ENSMUSG00000106758.1 ENSMUSG00000106758 ENSMUST00000201839 Gm42731 TEC Interval_80243 chr18 38497536 38497763 + 0 NA Intergenic Intergenic -16346 ENSMUSG00000118112.1 ENSMUSG00000118112 ENSMUST00000236084 Gm50349 processed_pseudogene Interval_123223 chr5 30742417 30742790 + 0 NA intron (ENSMUSG00000029168.14, intron 1 of 12) protein_coding-intron (ENSMUSG00000029168.14, intron 1 of 12) -16429 ENSMUSG00000106173.1 ENSMUSG00000106173 ENSMUST00000197835 Gm42764 sense_intronic Interval_174283 chrX 143229249 143230077 + 0 NA Intergenic Intergenic -45126 ENSMUSG00000083089.1 ENSMUSG00000083089 ENSMUST00000119663 Gm4760 processed_pseudogene Interval_126877 chr5 96445576 96445999 + 0 NA intron (ENSMUSG00000034687.8, intron 2 of 5) protein_coding-intron (ENSMUSG00000034687.8, intron 2 of 73) 11956 ENSMUSG00000106263.1 ENSMUSG00000106263 ENSMUST00000198132 Gm33050 antisense Interval_130269 chr5 125327616 125328457 + 0 NA promoter-TSS (ENSMUSG00000037936.15) protein_coding-promoter-TSS (ENSMUSG00000037936.15) -317 ENSMUSG00000037936.15 ENSMUSG00000037936 ENSMUST00000197310 Scarb1 protein_coding Interval_127539 chr5 104921935 104922491 + 0 NA Intergenic Intergenic -14438 ENSMUSG00000096561.1 ENSMUSG00000096561 ENSMUST00000178720 Gm24097 snRNA Interval_6221 chr1 102723065 102723281 + 0 NA Intergenic Intergenic 230375 ENSMUSG00000087908.1 ENSMUSG00000087908 ENSMUST00000157283 Gm22034 snoRNA Interval_123186 chr5 30476453 30477275 + 0 NA intron (ENSMUSG00000029182.10, intron 1 of 3) protein_coding-intron (ENSMUSG00000029182.10, intron 1 of 3) 10809 ENSMUSG00000029182.10 ENSMUSG00000029182 ENSMUST00000114743 Fam166c protein_coding Interval_136791 chr6 60356998 60357169 + 0 NA intron (ENSMUSG00000046764.8, intron 1 of 1) processed_transcript-intron (ENSMUSG00000046764.8, intron 1 of 1) 46624 ENSMUSG00000046764.8 ENSMUSG00000046764 ENSMUST00000203367 A530053G22Rik processed_transcript Interval_87940 chr19 57236514 57236987 + 0 NA intron (ENSMUSG00000025085.16, intron 1 of 20) protein_coding-intron (ENSMUSG00000025085.16, intron 1 of 6) -37210 ENSMUSG00000117684.1 ENSMUSG00000117684 ENSMUST00000237596 4930449E18Rik antisense Interval_168545 chr9 83433476 83434309 + 0 NA intron (ENSMUSG00000099718.1, intron 1 of 2) protein_coding-intron (ENSMUSG00000032258.15, intron 1 of 7) 2345 ENSMUSG00000099718.1 ENSMUSG00000099718 ENSMUST00000188217 Gm2087 antisense Interval_95512 chr2 110844284 110844848 + 0 NA intron (ENSMUSG00000074968.11, intron 4 of 17) protein_coding-intron (ENSMUSG00000074968.11, intron 4 of 26) -83002 ENSMUSG00000074968.11 ENSMUSG00000074968 ENSMUST00000140777 Ano3 protein_coding Interval_89637 chr2 23631133 23631432 + 0 NA Intergenic Intergenic -48936 ENSMUSG00000083729.1 ENSMUSG00000083729 ENSMUST00000121498 Sh3d2c-ps1 processed_pseudogene Interval_43224 chr13 25806334 25807307 + 0 NA Intergenic Intergenic -125677 ENSMUSG00000082161.1 ENSMUSG00000082161 ENSMUST00000121436 Gm11350 processed_pseudogene Interval_87055 chr19 45832074 45832483 + 0 NA intron (ENSMUSG00000039901.10, intron 24 of 25) protein_coding-intron (ENSMUSG00000039901.10, intron 24 of 25) -11339 ENSMUSG00000117956.1 ENSMUSG00000117956 ENSMUST00000235344 Gm50196 antisense Interval_80565 chr18 44286559 44287356 + 0 NA Intergenic Intergenic 16830 ENSMUSG00000038071.3 ENSMUSG00000038071 ENSMUST00000042747 Npy6r protein_coding Interval_159744 chr8 100360001 100361053 + 0 NA Intergenic Intergenic -78231 ENSMUSG00000110220.1 ENSMUSG00000110220 ENSMUST00000209625 Gm45296 processed_pseudogene Interval_144754 chr7 28039248 28039449 + 0 NA Intergenic Intergenic 10700 ENSMUSG00000030603.16 ENSMUSG00000030603 ENSMUST00000126528 Psmc4 protein_coding Interval_174752 chrX 165410647 165411329 + 0 NA Intergenic Intergenic -83595 ENSMUSG00000018589.8 ENSMUSG00000018589 ENSMUST00000058787 Glra2 protein_coding Interval_159365 chr8 94089121 94090211 + 0 NA intron (ENSMUSG00000031755.6, intron 3 of 16) protein_coding-intron (ENSMUSG00000031755.6, intron 3 of 16) -9910 ENSMUSG00000031755.6 ENSMUSG00000031755 ENSMUST00000172347 Bbs2 protein_coding Interval_118473 chr4 131896334 131896661 + 0 NA intron (ENSMUSG00000028911.16, intron 5 of 5) protein_coding-intron (ENSMUSG00000028911.16, intron 3 of 5) 6814 ENSMUSG00000083013.1 ENSMUSG00000083013 ENSMUST00000121250 Gm12978 transcribed_processed_pseudogene Interval_162682 chr9 7786193 7786756 + 0 NA intron (ENSMUSG00000050912.15, intron 3 of 5) protein_coding-intron (ENSMUSG00000050912.15, intron 2 of 4) 2084 ENSMUSG00000093615.1 ENSMUSG00000093615 ENSMUST00000175907 Mir5618 miRNA Interval_158352 chr8 82632793 82633142 + 0 NA Intergenic Intergenic 55200 ENSMUSG00000097984.1 ENSMUSG00000097984 ENSMUST00000183320 Gm8167 processed_pseudogene Interval_110608 chr4 4636074 4636427 + 0 NA Intergenic Intergenic -93323 ENSMUSG00000095971.1 ENSMUSG00000095971 ENSMUST00000180325 Gm26436 snoRNA Interval_98341 chr2 151610840 151611474 + 0 NA intron (ENSMUSG00000027457.15, intron 2 of 4) protein_coding-intron (ENSMUSG00000027457.15, intron 2 of 5) 21404 ENSMUSG00000027457.15 ENSMUSG00000027457 ENSMUST00000133378 Snph protein_coding Interval_58489 chr15 35178777 35179012 + 0 NA promoter-TSS (ENSMUSG00000022329.15) protein_coding-promoter-TSS (ENSMUSG00000022329.15) -21910 ENSMUSG00000115345.1 ENSMUSG00000115345 ENSMUST00000228112 Gm33497 lincRNA Interval_126607 chr5 90818419 90819509 + 0 NA Intergenic Intergenic -13364 ENSMUSG00000107044.1 ENSMUSG00000107044 ENSMUST00000202536 Gm43086 lincRNA Interval_103145 chr3 35925842 35926040 + 0 NA intron (ENSMUSG00000027708.14, intron 1 of 5) protein_coding-intron (ENSMUSG00000027708.14, intron 1 of 6) 6393 ENSMUSG00000027708.14 ENSMUSG00000027708 ENSMUST00000196174 Dcun1d1 protein_coding Interval_49301 chr13 110430166 110430982 + 0 NA Intergenic Intergenic 34562 ENSMUSG00000021701.8 ENSMUSG00000021701 ENSMUST00000225156 Plk2 protein_coding Interval_128765 chr5 115142880 115143170 + 0 NA TTS (ENSMUSG00000048578.11) protein_coding-TTS (ENSMUSG00000048578.11) 8021 ENSMUSG00000048578.11 ENSMUSG00000048578 ENSMUST00000124678 Mlec protein_coding Interval_61923 chr15 85273003 85273806 + 0 NA intron (ENSMUSG00000006369.14, intron 16 of 16) protein_coding-intron (ENSMUSG00000006369.14, intron 16 of 16) 9950 ENSMUSG00000006369.14 ENSMUSG00000006369 ENSMUST00000160798 Fbln1 protein_coding Interval_149018 chr7 92071711 92072474 + 0 NA intron (ENSMUSG00000052572.19, intron 2 of 14) protein_coding-intron (ENSMUSG00000052572.19, intron 11 of 22) 7499 ENSMUSG00000109191.1 ENSMUSG00000109191 ENSMUST00000208051 Gm45131 TEC Interval_93107 chr2 70278101 70279489 + 0 NA intron (ENSMUSG00000042064.13, intron 22 of 33) protein_coding-intron (ENSMUSG00000042064.13, intron 23 of 34) -180187 ENSMUSG00000047965.9 ENSMUSG00000047965 ENSMUST00000140507 Rpl9-ps7 processed_pseudogene Interval_109773 chr3 146852025 146852862 + 0 NA promoter-TSS (ENSMUSG00000036745.15) protein_coding-promoter-TSS (ENSMUSG00000036745.15) -13096 ENSMUSG00000070343.3 ENSMUSG00000070343 ENSMUST00000084614 Gm10288 processed_pseudogene Interval_106692 chr3 98975738 98976220 + 0 NA Intergenic Intergenic -34723 ENSMUSG00000085121.2 ENSMUSG00000085121 ENSMUST00000155540 5730437C11Rik lincRNA Interval_54502 chr14 70294918 70295410 + 0 NA Intergenic Intergenic 4843 ENSMUSG00000106195.1 ENSMUSG00000106195 ENSMUST00000197487 Gm44340 miRNA Interval_138304 chr6 87051833 87052055 + 0 NA intron (ENSMUSG00000029992.14, intron 2 of 2) protein_coding-intron (ENSMUSG00000029992.14, intron 2 of 19) 9094 ENSMUSG00000029992.14 ENSMUSG00000029992 ENSMUST00000146410 Gfpt1 protein_coding Interval_120666 chr4 149988623 149989326 + 0 NA intron (ENSMUSG00000028980.14, intron 3 of 4) protein_coding-intron (ENSMUSG00000028980.14, intron 3 of 4) 12291 ENSMUSG00000028980.14 ENSMUSG00000028980 ENSMUST00000152907 H6pd protein_coding Interval_7377 chr1 130715324 130717832 + 0 NA promoter-TSS (ENSMUSG00000046404.5) protein_coding-promoter-TSS (ENSMUSG00000046404.5) -749 ENSMUSG00000046404.5 ENSMUSG00000046404 ENSMUST00000049813 Yod1 protein_coding Interval_6122 chr1 97688926 97689143 + 0 NA Intergenic Intergenic -27358 ENSMUSG00000044768.16 ENSMUSG00000044768 ENSMUST00000142234 D1Ertd622e protein_coding Interval_118290 chr4 130066705 130067258 + 0 NA intron (ENSMUSG00000040690.15, intron 22 of 60) protein_coding-intron (ENSMUSG00000040690.15, intron 32 of 69) 11926 ENSMUSG00000040690.15 ENSMUSG00000040690 ENSMUST00000135675 Col16a1 protein_coding Interval_2709 chr1 43702838 43703157 + 0 NA Intergenic Intergenic -27605 ENSMUSG00000026051.8 ENSMUSG00000026051 ENSMUST00000027217 Ecrg4 protein_coding Interval_36373 chr12 42543096 42543559 + 0 NA Intergenic Intergenic 261611 ENSMUSG00000093214.1 ENSMUSG00000093214 ENSMUST00000175473 Gm25248 miRNA Interval_34 GL456211.1 182108 182940 + 0 NA NA NA NA NA Interval_148532 chr7 82223557 82225103 + 0 NA intron (ENSMUSG00000030638.13, intron 1 of 5) protein_coding-intron (ENSMUSG00000030638.13, intron 1 of 8) 49174 ENSMUSG00000030638.13 ENSMUSG00000030638 ENSMUST00000178526 Sh3gl3 protein_coding Interval_35596 chr12 25149633 25150426 + 0 NA promoter-TSS (ENSMUSG00000113587.1) lincRNA-promoter-TSS (ENSMUSG00000113587.1) -886 ENSMUSG00000113587.1 ENSMUSG00000113587 ENSMUST00000223481 Gm36287 lincRNA Interval_171820 chr9 121443377 121444204 + 0 NA exon (ENSMUSG00000032536.12, exon 6 of 6) protein_coding-exon (ENSMUSG00000032536.12, exon 6 of 6) 50720 ENSMUSG00000032532.7 ENSMUSG00000032532 ENSMUST00000217581 Cck protein_coding Interval_172932 chrX 56597474 56598510 + 0 NA promoter-TSS (ENSMUSG00000061273.3) protein_coding-promoter-TSS (ENSMUSG00000061273.3) 77 ENSMUSG00000061273.3 ENSMUSG00000061273 ENSMUST00000059899 Mmgt1 protein_coding Interval_8985 chr1 152901988 152903919 + 0 NA promoter-TSS (ENSMUSG00000042772.15) protein_coding-promoter-TSS (ENSMUSG00000042772.15) -22655 ENSMUSG00000100394.1 ENSMUSG00000100394 ENSMUST00000185888 Gm28791 sense_intronic Interval_31954 chr11 104087917 104088817 + 0 NA Intergenic Intergenic -44488 ENSMUSG00000018634.10 ENSMUSG00000018634 ENSMUST00000093925 Crhr1 protein_coding Interval_74506 chr17 52478771 52478989 + 0 NA Intergenic Intergenic -17115 ENSMUSG00000117035.1 ENSMUSG00000117035 ENSMUST00000233404 Gm5094 lincRNA Interval_164743 chr9 40990127 40990565 + 0 NA intron (ENSMUSG00000032021.14, intron 3 of 9) protein_coding-intron (ENSMUSG00000032021.14, intron 3 of 9) 14240 ENSMUSG00000032021.14 ENSMUSG00000032021 ENSMUST00000034519 Crtam protein_coding Interval_107081 chr3 103386101 103387013 + 0 NA Intergenic Intergenic -6376 ENSMUSG00000089029.1 ENSMUSG00000089029 ENSMUST00000158404 Gm25009 snoRNA Interval_67373 chr16 48195771 48196336 + 0 NA Intergenic Intergenic -22552 ENSMUSG00000048164.9 ENSMUSG00000048164 ENSMUST00000062591 Gm7204 processed_pseudogene Interval_125319 chr5 66172023 66172328 + 0 NA intron (ENSMUSG00000107014.1, intron 2 of 2) antisense-intron (ENSMUSG00000097092.2, intron 4 of 5) 3168 ENSMUSG00000107069.1 ENSMUSG00000107069 ENSMUST00000202052 Gm43772 transcribed_processed_pseudogene Interval_81783 chr18 64637482 64639278 + 0 NA intron (ENSMUSG00000039529.9, intron 1 of 4) protein_coding-intron (ENSMUSG00000039529.9, intron 1 of 27) 22427 ENSMUSG00000039529.9 ENSMUSG00000039529 ENSMUST00000237686 Atp8b1 protein_coding Interval_40332 chr12 103823647 103823914 + 0 NA intron (ENSMUSG00000071178.11, intron 1 of 5) protein_coding-intron (ENSMUSG00000071178.11, intron 1 of 5) -1537 ENSMUSG00000090555.1 ENSMUSG00000090555 ENSMUST00000172146 Gm8893 unprocessed_pseudogene Interval_128194 chr5 111631118 111632253 + 0 NA Intergenic Intergenic 38069 ENSMUSG00000104833.1 ENSMUSG00000104833 ENSMUST00000198964 Gm42489 lincRNA Interval_108379 chr3 126443157 126444254 + 0 NA exon (ENSMUSG00000105695.1, exon 1 of 1) TEC-exon (ENSMUSG00000105695.1, exon 1 of 1) 2693 ENSMUSG00000105695.1 ENSMUSG00000105695 ENSMUST00000199285 Gm43327 TEC Interval_158734 chr8 85617437 85619223 + 0 NA Intergenic Intergenic 12868 ENSMUSG00000109731.1 ENSMUSG00000109731 ENSMUST00000211727 Gm45425 lincRNA Interval_109296 chr3 138741636 138743618 + 0 NA promoter-TSS (ENSMUSG00000028152.10) protein_coding-promoter-TSS (ENSMUSG00000028152.10) -142 ENSMUSG00000028152.10 ENSMUSG00000028152 ENSMUST00000121826 Tspan5 protein_coding Interval_152322 chr7 131753509 131754121 + 0 NA intron (ENSMUSG00000030849.18, intron 2 of 6) protein_coding-intron (ENSMUSG00000030849.18, intron 2 of 6) 32764 ENSMUSG00000108839.1 ENSMUSG00000108839 ENSMUST00000207793 Gm44547 TEC Interval_145494 chr7 35184963 35187093 + 0 NA promoter-TSS (ENSMUSG00000030495.12) protein_coding-promoter-TSS (ENSMUSG00000030495.12) -454 ENSMUSG00000030495.12 ENSMUSG00000030495 ENSMUST00000146959 Slc7a10 protein_coding Interval_124470 chr5 48509601 48510840 + 0 NA intron (ENSMUSG00000029088.16, intron 1 of 8) protein_coding-intron (ENSMUSG00000029088.16, intron 1 of 8) 27721 ENSMUSG00000105653.1 ENSMUSG00000105653 ENSMUST00000200461 Gm43831 TEC Interval_82503 chr18 74706244 74706627 + 0 NA intron (ENSMUSG00000025885.18, intron 21 of 39) protein_coding-intron (ENSMUSG00000025885.18, intron 21 of 38) -7184 ENSMUSG00000025885.18 ENSMUSG00000025885 ENSMUST00000154986 Myo5b protein_coding Interval_66775 chr16 37522307 37522587 + 0 NA intron (ENSMUSG00000022828.10, intron 3 of 4) protein_coding-intron (ENSMUSG00000022828.10, intron 3 of 4) 17329 ENSMUSG00000022828.10 ENSMUSG00000022828 ENSMUST00000130350 Gtf2e1 protein_coding Interval_39229 chr12 86060903 86061199 + 0 NA intron (ENSMUSG00000021253.7, intron 5 of 6) protein_coding-intron (ENSMUSG00000021253.7, intron 5 of 6) -8122 ENSMUSG00000103301.1 ENSMUSG00000103301 ENSMUST00000192206 Gm37804 TEC Interval_125765 chr5 73976008 73976349 + 0 NA Intergenic Intergenic 29797 ENSMUSG00000106968.1 ENSMUSG00000106968 ENSMUST00000202711 C78283 lincRNA Interval_157748 chr8 72736065 72736466 + 0 NA intron (ENSMUSG00000031622.16, intron 5 of 5) protein_coding-intron (ENSMUSG00000031622.16, intron 5 of 18) -4586 ENSMUSG00000031622.16 ENSMUSG00000031622 ENSMUST00000212677 Sin3b protein_coding Interval_96336 chr2 121716202 121716543 + 0 NA intron (ENSMUSG00000027238.17, intron 1 of 7) protein_coding-intron (ENSMUSG00000027238.17, intron 1 of 13) -2158 ENSMUSG00000084244.1 ENSMUSG00000084244 ENSMUST00000118165 Gm14020 processed_pseudogene Interval_22200 chr11 7122272 7122526 + 0 NA intron (ENSMUSG00000020431.5, intron 4 of 19) protein_coding-intron (ENSMUSG00000020431.5, intron 4 of 19) -37483 ENSMUSG00000020431.5 ENSMUSG00000020431 ENSMUST00000135398 Adcy1 protein_coding Interval_163174 chr9 16833440 16833680 + 0 NA Intergenic Intergenic -196485 ENSMUSG00000090602.3 ENSMUSG00000090602 ENSMUST00000164523 Gm5611 processed_pseudogene Interval_6635 chr1 118434630 118435240 + 0 NA intron (ENSMUSG00000064302.13, intron 2 of 31) protein_coding-intron (ENSMUSG00000064302.13, intron 2 of 39) 18550 ENSMUSG00000077257.1 ENSMUSG00000077257 ENSMUST00000104069 Gm26080 snoRNA Interval_43131 chr13 24517721 24518221 + 0 NA intron (ENSMUSG00000036006.20, intron 1 of 13) protein_coding-intron (ENSMUSG00000036006.20, intron 1 of 13) 16446 ENSMUSG00000036006.20 ENSMUSG00000036006 ENSMUST00000177489 Ripor2 protein_coding Interval_146314 chr7 45299702 45300709 + 0 NA Intergenic Intergenic 22692 ENSMUSG00000070568.12 ENSMUSG00000070568 ENSMUST00000210733 Slc6a21 protein_coding Interval_173998 chrX 127547824 127548040 + 0 NA Intergenic Intergenic -101016 ENSMUSG00000082382.1 ENSMUSG00000082382 ENSMUST00000122289 Gm14970 processed_pseudogene Interval_85910 chr19 32947562 32948046 + 0 NA Intergenic Intergenic 22504 ENSMUSG00000084512.1 ENSMUSG00000084512 ENSMUST00000122563 Gm22482 misc_RNA Interval_77993 chr18 6499851 6500071 + 0 NA intron (ENSMUSG00000024240.13, intron 1 of 13) protein_coding-intron (ENSMUSG00000024240.13, intron 1 of 13) -9315 ENSMUSG00000084514.1 ENSMUSG00000084514 ENSMUST00000122565 Mir1893 miRNA Interval_51632 chr14 30938759 30938978 + 0 NA intron (ENSMUSG00000006529.16, intron 6 of 21) protein_coding-intron (ENSMUSG00000006529.16, intron 6 of 21) 4418 ENSMUSG00000006529.16 ENSMUSG00000006529 ENSMUST00000227938 Itih1 protein_coding Interval_121369 chr4 155296286 155297544 + 0 NA intron (ENSMUSG00000029053.16, intron 2 of 4) protein_coding-intron (ENSMUSG00000029053.16, intron 5 of 17) -46768 ENSMUSG00000098729.1 ENSMUSG00000098729 ENSMUST00000184626 Gm27200 antisense Interval_135745 chr6 46529531 46529799 + 0 NA exon (ENSMUSG00000079575.3, exon 1 of 1) processed_pseudogene-exon (ENSMUSG00000079575.3, exon 1 of 1) 1129 ENSMUSG00000079575.3 ENSMUSG00000079575 ENSMUST00000182751 Rbpj-ps3 processed_pseudogene Interval_19538 chr10 102576583 102576797 + 0 NA Intergenic Intergenic 64434 ENSMUSG00000044921.5 ENSMUSG00000044921 ENSMUST00000055355 Rassf9 protein_coding Interval_25288 chr11 46128468 46129123 + 0 NA exon (ENSMUSG00000011256.16, exon 13 of 23) protein_coding-exon (ENSMUSG00000011256.16, exon 13 of 23) -5327 ENSMUSG00000011256.16 ENSMUSG00000011256 ENSMUST00000153410 Adam19 protein_coding Interval_139745 chr6 108326411 108326840 + 0 NA intron (ENSMUSG00000030102.11, intron 1 of 22) protein_coding-intron (ENSMUSG00000030102.11, intron 4 of 61) -60809 ENSMUSG00000030102.11 ENSMUSG00000030102 ENSMUST00000205005 Itpr1 protein_coding Interval_27887 chr11 70639853 70640493 + 0 NA exon (ENSMUSG00000050675.7, exon 2 of 2) protein_coding-exon (ENSMUSG00000050675.7, exon 2 of 2) 1029 ENSMUSG00000050675.7 ENSMUSG00000050675 ENSMUST00000108551 Gp1ba protein_coding Interval_33255 chr11 115496433 115497511 + 0 NA TTS (ENSMUSG00000020737.12) protein_coding-TTS (ENSMUSG00000020737.12) 3948 ENSMUSG00000081376.1 ENSMUSG00000081376 ENSMUST00000118637 Gm11694 processed_pseudogene Interval_11983 chr1 188265996 188266184 + 0 NA intron (ENSMUSG00000026609.15, intron 2 of 19) protein_coding-intron (ENSMUSG00000026609.15, intron 1 of 70) 4067 ENSMUSG00000026609.15 ENSMUSG00000026609 ENSMUST00000127077 Ush2a protein_coding Interval_18514 chr10 86839932 86840260 + 0 NA intron (ENSMUSG00000089959.1, intron 1 of 2) antisense-intron (ENSMUSG00000089959.1, intron 1 of 2) 1002 ENSMUSG00000089959.1 ENSMUSG00000089959 ENSMUST00000159445 Gm16268 antisense Interval_120410 chr4 148433764 148434323 + 0 NA TTS (ENSMUSG00000047719.2) protein_coding-TTS (ENSMUSG00000047719.2) 9442 ENSMUSG00000064648.2 ENSMUSG00000064648 ENSMUST00000082714 Gm23303 snRNA Interval_156746 chr8 57801534 57801812 + 0 NA intron (ENSMUSG00000096914.3, intron 3 of 3) protein_coding-intron (ENSMUSG00000096914.3, intron 6 of 7) 41385 ENSMUSG00000096914.3 ENSMUSG00000096914 ENSMUST00000203398 Galntl6 protein_coding Interval_94827 chr2 95494485 95495098 + 0 NA Intergenic Intergenic 100549 ENSMUSG00000084906.1 ENSMUSG00000084906 ENSMUST00000148637 Gm13794 lincRNA Interval_102174 chr3 19201431 19202223 + 0 NA intron (ENSMUSG00000027601.13, intron 3 of 4) protein_coding-intron (ENSMUSG00000027601.13, intron 2 of 8) 13553 ENSMUSG00000027601.13 ENSMUSG00000027601 ENSMUST00000131053 Mtfr1 protein_coding Interval_62978 chr15 98447931 98449002 + 0 NA Intergenic Intergenic -1892 ENSMUSG00000115964.1 ENSMUSG00000115964 ENSMUST00000231084 Gm6979 processed_pseudogene Interval_103199 chr3 36600817 36601336 + 0 NA intron (ENSMUSG00000037325.10, intron 8 of 18) protein_coding-intron (ENSMUSG00000037325.10, intron 8 of 18) -23791 ENSMUSG00000037325.10 ENSMUSG00000037325 ENSMUST00000142333 Bbs7 protein_coding Interval_45554 chr13 55825086 55826607 + 0 NA promoter-TSS (ENSMUSG00000114493.2) antisense-promoter-TSS (ENSMUSG00000114493.2) -404 ENSMUSG00000114493.2 ENSMUSG00000114493 ENSMUST00000225993 Gm47071 antisense Interval_38065 chr12 75452859 75453236 + 0 NA exon (ENSMUSG00000021051.10, exon 14 of 14) protein_coding-exon (ENSMUSG00000021051.10, exon 14 of 14) -36266 ENSMUSG00000048982.3 ENSMUSG00000048982 ENSMUST00000051079 Gphb5 protein_coding Interval_90898 chr2 33328725 33329562 + 0 NA intron (ENSMUSG00000038831.16, intron 3 of 17) protein_coding-intron (ENSMUSG00000038831.16, intron 3 of 16) 5972 ENSMUSG00000082844.1 ENSMUSG00000082844 ENSMUST00000120467 Gm13537 processed_pseudogene Interval_49008 chr13 106876119 106876756 + 0 NA intron (ENSMUSG00000042590.17, intron 16 of 29) protein_coding-intron (ENSMUSG00000042590.17, intron 17 of 29) 24537 ENSMUSG00000100833.1 ENSMUSG00000100833 ENSMUST00000191363 Gm28988 antisense Interval_77163 chr17 86996186 86996446 + 0 NA TTS (ENSMUSG00000024145.6) protein_coding-TTS (ENSMUSG00000024145.6) 1721 ENSMUSG00000024143.15 ENSMUSG00000024143 ENSMUST00000234309 Rhoq protein_coding Interval_122138 chr5 18026909 18028057 + 0 NA Intergenic Intergenic 64934 ENSMUSG00000028777.8 ENSMUSG00000028777 ENSMUST00000030561 Gnat3 protein_coding Interval_57098 chr15 6275634 6276773 + 0 NA Intergenic Intergenic 33710 ENSMUSG00000089771.1 ENSMUSG00000089771 ENSMUST00000161939 Gm16311 antisense Interval_122347 chr5 21597497 21598093 + 0 NA promoter-TSS (ENSMUSG00000106135.1) processed_pseudogene-promoter-TSS (ENSMUSG00000106135.1) -945 ENSMUSG00000106135.1 ENSMUSG00000106135 ENSMUST00000197353 Gm6543 processed_pseudogene Interval_149856 chr7 102027731 102027966 + 0 NA intron (ENSMUSG00000070426.12, intron 6 of 8) protein_coding-intron (ENSMUSG00000070426.12, intron 6 of 8) -9689 ENSMUSG00000070427.4 ENSMUSG00000070427 ENSMUST00000211502 Il18bp protein_coding Interval_81524 chr18 61383629 61383833 + 0 NA intron (ENSMUSG00000033871.14, intron 1 of 12) protein_coding-intron (ENSMUSG00000033871.14, intron 1 of 12) -14082 ENSMUSG00000093026.1 ENSMUSG00000093026 ENSMUST00000175285 Gm25301 miRNA Interval_10501 chr1 171351938 171352928 + 0 NA intron (ENSMUSG00000006412.10, intron 1 of 3) protein_coding-intron (ENSMUSG00000006412.10, intron 1 of 3) -1693 ENSMUSG00000102929.1 ENSMUSG00000102929 ENSMUST00000192266 Gm37154 TEC Interval_150708 chr7 113637083 113638809 + 0 NA Intergenic Intergenic 29070 ENSMUSG00000089467.1 ENSMUSG00000089467 ENSMUST00000158842 Gm23700 miRNA Interval_19983 chr10 111655331 111656103 + 0 NA Intergenic Intergenic -5905 ENSMUSG00000112357.1 ENSMUSG00000112357 ENSMUST00000217989 Gm47864 processed_pseudogene Interval_27230 chr11 64472383 64473828 + 0 NA intron (ENSMUSG00000047759.6, intron 1 of 1) protein_coding-intron (ENSMUSG00000047759.6, intron 1 of 1) 37773 ENSMUSG00000047759.6 ENSMUSG00000047759 ENSMUST00000058652 Hs3st3a1 protein_coding Interval_160055 chr8 106069162 106069560 + 0 NA intron (ENSMUSG00000031902.10, intron 1 of 3) protein_coding-intron (ENSMUSG00000031902.10, intron 1 of 9) 2513 ENSMUSG00000093345.2 ENSMUSG00000093345 ENSMUST00000175604 Gm27956 misc_RNA Interval_149637 chr7 100250778 100251149 + 0 NA intron (ENSMUSG00000030729.17, intron 2 of 4) protein_coding-intron (ENSMUSG00000030729.17, intron 2 of 14) -13712 ENSMUSG00000089987.2 ENSMUSG00000089987 ENSMUST00000160622 Gpx2-ps1 processed_pseudogene Interval_18872 chr10 91586092 91586959 + 0 NA Intergenic Intergenic 54365 ENSMUSG00000111782.1 ENSMUSG00000111782 ENSMUST00000216093 Gm47091 processed_pseudogene Interval_57053 chr15 5154290 5154868 + 0 NA intron (ENSMUSG00000050697.9, intron 1 of 8) protein_coding-intron (ENSMUSG00000050697.9, intron 1 of 8) 10688 ENSMUSG00000050697.9 ENSMUSG00000050697 ENSMUST00000228218 Prkaa1 protein_coding Interval_36022 chr12 33365818 33367532 + 0 NA promoter-TSS (ENSMUSG00000020564.17) protein_coding-promoter-TSS (ENSMUSG00000020564.17) 28085 ENSMUSG00000085664.1 ENSMUSG00000085664 ENSMUST00000138617 Atxn7l1os2 antisense Interval_134302 chr6 24696173 24698247 + 0 NA Intergenic Intergenic -36035 ENSMUSG00000029679.7 ENSMUSG00000029679 ENSMUST00000031690 Hyal6 protein_coding Interval_59902 chr15 61367604 61367892 + 0 NA intron (ENSMUSG00000116299.1, intron 5 of 5) lincRNA-intron (ENSMUSG00000116299.1, intron 5 of 5) -9744 ENSMUSG00000065812.1 ENSMUSG00000065812 ENSMUST00000083878 Gm24696 snoRNA Interval_109434 chr3 142345084 142345477 + 0 NA intron (ENSMUSG00000028273.15, intron 2 of 12) protein_coding-intron (ENSMUSG00000028273.15, intron 3 of 12) -41301 ENSMUSG00000028273.15 ENSMUSG00000028273 ENSMUST00000058626 Pdlim5 protein_coding Interval_95088 chr2 103780132 103780347 + 0 NA promoter-TSS (ENSMUSG00000027184.14) protein_coding-promoter-TSS (ENSMUSG00000027184.14) 16629 ENSMUSG00000027184.14 ENSMUSG00000027184 ENSMUST00000146527 Caprin1 protein_coding Interval_130268 chr5 125303963 125304954 + 0 NA promoter-TSS (ENSMUSG00000037936.15) protein_coding-promoter-TSS (ENSMUSG00000037936.15) 16986 ENSMUSG00000106458.1 ENSMUSG00000106458 ENSMUST00000198853 Gm42633 TEC Interval_80689 chr18 46333130 46335788 + 0 NA Intergenic Intergenic 5970 ENSMUSG00000117742.1 ENSMUSG00000117742 ENSMUST00000236411 4930415P13Rik TEC Interval_44396 chr13 44602707 44602987 + 0 NA Intergenic Intergenic -19335 ENSMUSG00000113730.1 ENSMUSG00000113730 ENSMUST00000221956 Gm47805 lincRNA Interval_91821 chr2 49878075 49878761 + 0 NA intron (ENSMUSG00000026765.12, intron 4 of 4) protein_coding-intron (ENSMUSG00000026765.12, intron 3 of 9) 28462 ENSMUSG00000088825.1 ENSMUSG00000088825 ENSMUST00000158200 Gm25223 misc_RNA Interval_75855 chr17 71872936 71873193 + 0 NA intron (ENSMUSG00000055471.7, intron 28 of 28) protein_coding-intron (ENSMUSG00000055471.7, intron 28 of 28) 44557 ENSMUSG00000024059.10 ENSMUSG00000024059 ENSMUST00000230290 Clip4 protein_coding Interval_113668 chr4 57427523 57427918 + 0 NA Intergenic Intergenic -13524 ENSMUSG00000081540.3 ENSMUSG00000081540 ENSMUST00000120064 Gm12538 processed_pseudogene Interval_27865 chr11 70504380 70505376 + 0 NA promoter-TSS (ENSMUSG00000018919.10) protein_coding-promoter-TSS (ENSMUSG00000018919.10) -5092 ENSMUSG00000018919.10 ENSMUSG00000018919 ENSMUST00000141924 Tm4sf5 protein_coding Interval_35208 chr12 18207912 18208333 + 0 NA Intergenic Intergenic -8420 ENSMUSG00000073198.5 ENSMUSG00000073198 ENSMUST00000101577 Bnip3l-ps transcribed_processed_pseudogene Interval_18383 chr10 85455739 85456351 + 0 NA intron (ENSMUSG00000020042.15, intron 1 of 16) protein_coding-intron (ENSMUSG00000020042.15, intron 1 of 9) 122144 ENSMUSG00000087895.1 ENSMUSG00000087895 ENSMUST00000157270 Gm25281 miRNA Interval_5803 chr1 91993676 91994768 + 0 NA intron (ENSMUSG00000026313.16, intron 3 of 22) protein_coding-intron (ENSMUSG00000026313.16, intron 6 of 25) 18235 ENSMUSG00000103101.1 ENSMUSG00000103101 ENSMUST00000194827 Gm37048 TEC Interval_156206 chr8 46022181 46023227 + 0 NA intron (ENSMUSG00000031637.13, intron 1 of 3) protein_coding-intron (ENSMUSG00000031637.13, intron 6 of 8) 12093 ENSMUSG00000031637.13 ENSMUSG00000031637 ENSMUST00000132341 Lrp2bp protein_coding Interval_15557 chr10 51369697 51370113 + 0 NA Intergenic Intergenic -86075 ENSMUSG00000112212.1 ENSMUSG00000112212 ENSMUST00000219395 Gm46189 lincRNA Interval_159712 chr8 98698701 98700004 + 0 NA Intergenic Intergenic -24150 ENSMUSG00000080480.1 ENSMUSG00000080480 ENSMUST00000116830 Gm23494 snRNA Interval_94475 chr2 91487121 91487474 + 0 NA intron (ENSMUSG00000027253.15, intron 19 of 37) protein_coding-intron (ENSMUSG00000027253.15, intron 19 of 37) 10978 ENSMUSG00000027253.15 ENSMUSG00000027253 ENSMUST00000151907 Lrp4 protein_coding Interval_27908 chr11 70769466 70769666 + 0 NA intron (ENSMUSG00000043602.5, intron 1 of 1) protein_coding-intron (ENSMUSG00000043602.5, intron 1 of 1) 5357 ENSMUSG00000043602.5 ENSMUSG00000043602 ENSMUST00000060444 Zfp3 protein_coding Interval_36326 chr12 41259835 41260399 + 0 NA intron (ENSMUSG00000056899.10, intron 3 of 5) protein_coding-intron (ENSMUSG00000056899.10, intron 4 of 6) 87973 ENSMUSG00000113086.1 ENSMUSG00000113086 ENSMUST00000223331 Gm47376 antisense Interval_6457 chr1 109834307 109834541 + 0 NA exon (ENSMUSG00000100025.1, exon 1 of 1) processed_pseudogene-exon (ENSMUSG00000100025.1, exon 1 of 1) 1400 ENSMUSG00000100025.1 ENSMUSG00000100025 ENSMUST00000190856 Gm8141 processed_pseudogene Interval_7249 chr1 128225508 128225717 + 0 NA intron (ENSMUSG00000056211.13, intron 4 of 7) protein_coding-intron (ENSMUSG00000056211.13, intron 23 of 26) -18352 ENSMUSG00000026353.9 ENSMUSG00000026353 ENSMUST00000189895 Ubxn4 protein_coding Interval_159585 chr8 95624582 95625029 + 0 NA Intergenic Intergenic 5586 ENSMUSG00000110483.1 ENSMUSG00000110483 ENSMUST00000211856 Gm45702 lincRNA Interval_55671 chr14 98801763 98802343 + 0 NA Intergenic Intergenic 87240 ENSMUSG00000098059.1 ENSMUSG00000098059 ENSMUST00000182552 Gm27034 processed_pseudogene Interval_12986 chr10 8896693 8897053 + 0 NA Intergenic Intergenic -7108 ENSMUSG00000111731.1 ENSMUSG00000111731 ENSMUST00000215873 Gm48727 lincRNA Interval_147666 chr7 71378971 71379695 + 0 NA intron (ENSMUSG00000099853.3, intron 6 of 6) lincRNA-intron (ENSMUSG00000099853.3, intron 2 of 2) 27882 ENSMUSG00000099558.1 ENSMUSG00000099558 ENSMUST00000190004 Gm29295 lincRNA Interval_12866 chr10 7029773 7030249 + 0 NA intron (ENSMUSG00000064065.15, intron 1 of 8) protein_coding-intron (ENSMUSG00000000766.18, intron 4 of 4) -6826 ENSMUSG00000064065.15 ENSMUSG00000064065 ENSMUST00000151960 Ipcef1 protein_coding Interval_8124 chr1 135835129 135835839 + 0 NA promoter-TSS (ENSMUSG00000026414.13) protein_coding-promoter-TSS (ENSMUSG00000026414.13) -906 ENSMUSG00000026414.13 ENSMUSG00000026414 ENSMUST00000188098 Tnnt2 protein_coding Interval_123266 chr5 30998140 30998834 + 0 NA Intergenic Intergenic 29825 ENSMUSG00000006642.3 ENSMUSG00000006642 ENSMUST00000006818 Tcf23 protein_coding Interval_63663 chr15 102651473 102652248 + 0 NA Intergenic Intergenic -5708 ENSMUSG00000116056.1 ENSMUSG00000116056 ENSMUST00000229601 Gm4544 lincRNA Interval_130977 chr5 134364206 134366116 + 0 NA intron (ENSMUSG00000023079.14, intron 6 of 7) protein_coding-intron (ENSMUSG00000023079.14, intron 23 of 30) 11863 ENSMUSG00000023079.14 ENSMUSG00000023079 ENSMUST00000201647 Gtf2ird1 protein_coding Interval_84765 chr19 16372113 16372279 + 0 NA intron (ENSMUSG00000024639.5, intron 5 of 6) protein_coding-intron (ENSMUSG00000024639.5, intron 5 of 6) -41298 ENSMUSG00000118142.1 ENSMUSG00000118142 ENSMUST00000237669 Gm19312 processed_pseudogene Interval_109278 chr3 138578047 138579499 + 0 NA Intergenic Intergenic 1788 ENSMUSG00000106353.1 ENSMUSG00000106353 ENSMUST00000199110 Gm43726 processed_pseudogene Interval_27096 chr11 62854892 62855545 + 0 NA intron (ENSMUSG00000090173.8, intron 5 of 13) protein_coding-intron (ENSMUSG00000090173.8, intron 5 of 13) 8095 ENSMUSG00000090173.8 ENSMUSG00000090173 ENSMUST00000127646 Fbxw10 protein_coding Interval_6364 chr1 106389327 106390016 + 0 NA intron (ENSMUSG00000044340.7, intron 15 of 16) protein_coding-intron (ENSMUSG00000044340.7, intron 15 of 16) 12316 ENSMUSG00000100247.1 ENSMUSG00000100247 ENSMUST00000187918 A530053M12Rik lincRNA Interval_55741 chr14 99475108 99475702 + 0 NA Intergenic Intergenic 33748 ENSMUSG00000115178.1 ENSMUSG00000115178 ENSMUST00000227904 Gm49220 processed_pseudogene Interval_38461 chr12 79196937 79197330 + 0 NA Intergenic Intergenic -4840 ENSMUSG00000066441.14 ENSMUSG00000066441 ENSMUST00000159500 Rdh11 protein_coding Interval_25619 chr11 50236362 50237723 + 0 NA promoter-TSS (ENSMUSG00000097887.2) antisense-promoter-TSS (ENSMUSG00000097887.2) 89 ENSMUSG00000097887.2 ENSMUSG00000097887 ENSMUST00000180443 Gm26542 antisense Interval_125160 chr5 64992793 64992994 + 0 NA intron (ENSMUSG00000029185.14, intron 2 of 3) protein_coding-intron (ENSMUSG00000029185.14, intron 2 of 13) 20243 ENSMUSG00000106186.1 ENSMUSG00000106186 ENSMUST00000197119 Gm43627 TEC Interval_173358 chrX 84506266 84506602 + 0 NA intron (ENSMUSG00000045103.19, intron 23 of 50) protein_coding-intron (ENSMUSG00000045103.19, intron 51 of 78) -373453 ENSMUSG00000084281.1 ENSMUSG00000084281 ENSMUST00000122197 Gm14770 processed_pseudogene Interval_12669 chr10 4242021 4244392 + 0 NA Intergenic Intergenic -30092 ENSMUSG00000111266.1 ENSMUSG00000111266 ENSMUST00000213553 Gm30570 lincRNA Interval_81406 chr18 60560257 60561449 + 0 NA promoter-TSS (ENSMUSG00000024604.7) protein_coding-promoter-TSS (ENSMUSG00000024604.7) 85 ENSMUSG00000024604.7 ENSMUSG00000024604 ENSMUST00000160353 Rbm22 protein_coding Interval_90405 chr2 30202978 30204018 + 0 NA intron (ENSMUSG00000039648.14, intron 1 of 13) protein_coding-intron (ENSMUSG00000039648.14, intron 1 of 12) 2291 ENSMUSG00000039648.14 ENSMUSG00000039648 ENSMUST00000149522 Kyat1 protein_coding Interval_38553 chr12 80107181 80107432 + 0 NA TTS (ENSMUSG00000021127.7) protein_coding-TTS (ENSMUSG00000021127.7) 5688 ENSMUSG00000021127.7 ENSMUSG00000021127 ENSMUST00000218835 Zfp36l1 protein_coding Interval_114860 chr4 86469095 86469489 + 0 NA intron (ENSMUSG00000028492.13, intron 3 of 3) protein_coding-intron (ENSMUSG00000028492.13, intron 3 of 3) -26951 ENSMUSG00000083272.1 ENSMUSG00000083272 ENSMUST00000118478 Gm12550 processed_pseudogene Interval_128026 chr5 110350433 110350985 + 0 NA intron (ENSMUSG00000072754.9, intron 1 of 5) protein_coding-intron (ENSMUSG00000072754.9, intron 1 of 5) -3449 ENSMUSG00000072754.9 ENSMUSG00000072754 ENSMUST00000190963 Lrcol1 protein_coding Interval_3477 chr1 58706424 58706637 + 0 NA Intergenic Intergenic 4221 ENSMUSG00000101046.1 ENSMUSG00000101046 ENSMUST00000190385 Gm28803 processed_pseudogene Interval_68374 chr16 74809401 74809600 + 0 NA Intergenic Intergenic 66438 ENSMUSG00000116881.1 ENSMUSG00000116881 ENSMUST00000232678 Gm49674 TEC Interval_14052 chr10 26194605 26195991 + 0 NA Intergenic Intergenic -34828 ENSMUSG00000051354.14 ENSMUSG00000051354 ENSMUST00000219738 Samd3 protein_coding Interval_148080 chr7 79102305 79102527 + 0 NA intron (ENSMUSG00000030607.7, intron 12 of 16) protein_coding-intron (ENSMUSG00000030607.7, intron 12 of 16) 2665 ENSMUSG00000030607.7 ENSMUSG00000030607 ENSMUST00000206779 Acan protein_coding Interval_78386 chr18 12368421 12369118 + 0 NA intron (ENSMUSG00000024421.16, intron 1 of 74) protein_coding-intron (ENSMUSG00000024421.16, intron 1 of 74) 2970 ENSMUSG00000099663.1 ENSMUSG00000099663 ENSMUST00000189120 Gm29201 processed_pseudogene Interval_40415 chr12 104734894 104735085 + 0 NA intron (ENSMUSG00000041415.10, intron 1 of 26) protein_coding-intron (ENSMUSG00000041415.10, intron 1 of 26) -12937 ENSMUSG00000041415.10 ENSMUSG00000041415 ENSMUST00000222002 Dicer1 protein_coding Interval_516 chr1 6898077 6898412 + 0 NA Intergenic Intergenic -12316 ENSMUSG00000104385.1 ENSMUSG00000104385 ENSMUST00000194393 Gm7449 processed_pseudogene Interval_16374 chr10 62557092 62558327 + 0 NA TTS (ENSMUSG00000036955.16) protein_coding-TTS (ENSMUSG00000036955.16) 10709 ENSMUSG00000036955.16 ENSMUSG00000036955 ENSMUST00000159722 Kifbp protein_coding Interval_63416 chr15 100930219 100930802 + 0 NA intron (ENSMUSG00000023033.14, intron 2 of 2) protein_coding-intron (ENSMUSG00000023033.14, intron 1 of 26) -39612 ENSMUSG00000023033.14 ENSMUSG00000023033 ENSMUST00000201246 Scn8a protein_coding Interval_17609 chr10 78162409 78162873 + 0 NA TTS (ENSMUSG00000053329.7) protein_coding-TTS (ENSMUSG00000053329.7) 4801 ENSMUSG00000053329.7 ENSMUSG00000053329 ENSMUST00000218286 Gatd3a protein_coding Interval_13118 chr10 11724848 11725070 + 0 NA Intergenic Intergenic 76954 ENSMUSG00000077539.1 ENSMUSG00000077539 ENSMUST00000104351 Gm22546 snoRNA Interval_174621 chrX 160179197 160179481 + 0 NA Intergenic Intergenic -50374 ENSMUSG00000031299.10 ENSMUSG00000031299 ENSMUST00000127535 Pdha1 protein_coding Interval_125490 chr5 67613620 67614141 + 0 NA exon (ENSMUSG00000050010.8, exon 2 of 2) protein_coding-exon (ENSMUSG00000050010.8, exon 2 of 2) 5911 ENSMUSG00000050010.8 ENSMUSG00000050010 ENSMUST00000142843 Shisa3 protein_coding Interval_97907 chr2 145561939 145562462 + 0 NA intron (ENSMUSG00000063873.10, intron 6 of 16) protein_coding-intron (ENSMUSG00000063873.10, intron 5 of 15) -7218 ENSMUSG00000074753.5 ENSMUSG00000074753 ENSMUST00000136794 Gm14092 antisense Interval_66621 chr16 35697624 35697930 + 0 NA exon (ENSMUSG00000022848.8, exon 9 of 9) protein_coding-exon (ENSMUSG00000022848.8, exon 9 of 9) 24456 ENSMUSG00000087793.1 ENSMUSG00000087793 ENSMUST00000157168 Gm25967 snoRNA Interval_136609 chr6 56617092 56617478 + 0 NA intron (ENSMUSG00000004347.17, intron 1 of 19) protein_coding-intron (ENSMUSG00000004347.17, intron 1 of 19) -16336 ENSMUSG00000077682.1 ENSMUSG00000077682 ENSMUST00000104494 Gm22493 snoRNA Interval_100672 chr2 171173497 171173813 + 0 NA Intergenic Intergenic -41844 ENSMUSG00000084818.1 ENSMUSG00000084818 ENSMUST00000145800 Gm14640 lincRNA Interval_134873 chr6 32968650 32969587 + 0 NA intron (ENSMUSG00000053768.13, intron 3 of 7) protein_coding-intron (ENSMUSG00000053768.13, intron 3 of 7) -69350 ENSMUSG00000085847.1 ENSMUSG00000085847 ENSMUST00000138298 Gm14540 antisense Interval_8643 chr1 145956963 145958388 + 0 NA Intergenic Intergenic -462761 ENSMUSG00000090323.2 ENSMUSG00000090323 ENSMUST00000163646 Gm5263 processed_pseudogene Interval_60005 chr15 63721643 63723353 + 0 NA intron (ENSMUSG00000115676.1, intron 2 of 3) lincRNA-intron (ENSMUSG00000115676.1, intron 2 of 3) 4104 ENSMUSG00000115676.1 ENSMUSG00000115676 ENSMUST00000226443 4930449C09Rik lincRNA Interval_130931 chr5 134121305 134122225 + 0 NA intron (ENSMUSG00000015944.9, intron 1 of 8) protein_coding-intron (ENSMUSG00000015944.9, intron 1 of 8) 21760 ENSMUSG00000015944.9 ENSMUSG00000015944 ENSMUST00000140240 Castor2 protein_coding Interval_48116 chr13 96346453 96347176 + 0 NA Intergenic Intergenic -10297 ENSMUSG00000076343.1 ENSMUSG00000076343 ENSMUST00000102388 Gm25213 miRNA Interval_142067 chr6 136920501 136921063 + 0 NA intron (ENSMUSG00000030219.13, intron 2 of 2) protein_coding-intron (ENSMUSG00000030219.13, intron 2 of 6) 1358 ENSMUSG00000030219.13 ENSMUSG00000030219 ENSMUST00000162755 Erp27 protein_coding Interval_27673 chr11 69404595 69405284 + 0 NA promoter-TSS (ENSMUSG00000018476.7) protein_coding-promoter-TSS (ENSMUSG00000018476.7) -724 ENSMUSG00000018476.7 ENSMUSG00000018476 ENSMUST00000156562 Kdm6b protein_coding Interval_79161 chr18 25130641 25131034 + 0 NA TTS (ENSMUSG00000034295.10) protein_coding-TTS (ENSMUSG00000034295.10) 37857 ENSMUSG00000024269.11 ENSMUSG00000024269 ENSMUST00000115817 Tpgs2 protein_coding Interval_126495 chr5 89131692 89132051 + 0 NA intron (ENSMUSG00000060961.16, intron 10 of 25) protein_coding-intron (ENSMUSG00000060961.16, intron 9 of 24) 245385 ENSMUSG00000060961.16 ENSMUSG00000060961 ENSMUST00000134303 Slc4a4 protein_coding Interval_119605 chr4 138684630 138685135 + 0 NA Intergenic Intergenic 40339 ENSMUSG00000043621.13 ENSMUSG00000043621 ENSMUST00000135156 Ubxn10 protein_coding Interval_44443 chr13 44863746 44864428 + 0 NA intron (ENSMUSG00000038518.15, intron 3 of 5) protein_coding-intron (ENSMUSG00000038518.15, intron 4 of 18) -25804 ENSMUSG00000088189.1 ENSMUSG00000088189 ENSMUST00000157564 Gm22213 snoRNA Interval_95084 chr2 103769603 103770085 + 0 NA intron (ENSMUSG00000027184.14, intron 2 of 3) protein_coding-intron (ENSMUSG00000027184.14, intron 15 of 18) -8649 ENSMUSG00000027185.15 ENSMUSG00000027185 ENSMUST00000148798 Nat10 protein_coding Interval_156964 chr8 62550358 62550744 + 0 NA Intergenic Intergenic -2720 ENSMUSG00000109740.1 ENSMUSG00000109740 ENSMUST00000211203 Gm7561 processed_pseudogene Interval_149041 chr7 92630081 92630418 + 0 NA intron (ENSMUSG00000041343.19, intron 2 of 6) protein_coding-intron (ENSMUSG00000041343.19, intron 2 of 12) 6011 ENSMUSG00000041343.19 ENSMUSG00000041343 ENSMUST00000207151 Ankrd42 protein_coding Interval_31750 chr11 102623091 102625422 + 0 NA intron (ENSMUSG00000086283.7, intron 1 of 3) lincRNA-intron (ENSMUSG00000086283.7, intron 1 of 2) 160 ENSMUSG00000086283.7 ENSMUSG00000086283 ENSMUST00000147541 2810433D01Rik lincRNA Interval_53361 chr14 56646424 56647319 + 0 NA intron (ENSMUSG00000054509.7, intron 31 of 34) protein_coding-intron (ENSMUSG00000054509.7, intron 31 of 34) -8464 ENSMUSG00000054509.7 ENSMUSG00000054509 ENSMUST00000162312 Parp4 protein_coding Interval_61490 chr15 81948259 81950774 + 0 NA TTS (ENSMUSG00000042109.8) protein_coding-TTS (ENSMUSG00000042109.8) 11317 ENSMUSG00000022474.15 ENSMUSG00000022474 ENSMUST00000147442 Pmm1 protein_coding Interval_4610 chr1 75435322 75436446 + 0 NA promoter-TSS (ENSMUSG00000033021.16) protein_coding-promoter-TSS (ENSMUSG00000033021.16) -1058 ENSMUSG00000033021.16 ENSMUSG00000033021 ENSMUST00000124539 Gmppa protein_coding Interval_21396 chr10 128353967 128354188 + 0 NA intron (ENSMUSG00000005683.8, intron 6 of 10) protein_coding-intron (ENSMUSG00000005683.8, intron 6 of 10) 4836 ENSMUSG00000089313.2 ENSMUSG00000089313 ENSMUST00000158688 Gm23182 snoRNA Interval_173834 chrX 105871255 105871496 + 0 NA intron (ENSMUSG00000031229.16, intron 4 of 5) protein_coding-intron (ENSMUSG00000031229.16, intron 9 of 34) -2449 ENSMUSG00000084575.1 ENSMUSG00000084575 ENSMUST00000122626 Gm23656 snRNA Interval_53224 chr14 55278531 55278877 + 0 NA intron (ENSMUSG00000114987.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000114987.1, intron 1 of 1) 1983 ENSMUSG00000114987.1 ENSMUSG00000114987 ENSMUST00000227782 Gm49022 lincRNA Interval_121273 chr4 154599668 154601724 + 0 NA promoter-TSS (ENSMUSG00000084987.1) antisense-promoter-TSS (ENSMUSG00000084987.1) -501 ENSMUSG00000084987.1 ENSMUSG00000084987 ENSMUST00000132106 Gm13134 antisense Interval_9754 chr1 161767007 161767666 + 0 NA Intergenic Intergenic 21022 ENSMUSG00000000817.10 ENSMUSG00000000817 ENSMUST00000193648 Fasl protein_coding Interval_168796 chr9 87161186 87163542 + 0 NA intron (ENSMUSG00000042761.14, intron 2 of 4) protein_coding-intron (ENSMUSG00000042761.14, intron 1 of 3) 18021 ENSMUSG00000042761.14 ENSMUSG00000042761 ENSMUST00000179313 Mrap2 protein_coding Interval_9579 chr1 159634848 159635624 + 0 NA intron (ENSMUSG00000073528.7, intron 1 of 1) processed_transcript-intron (ENSMUSG00000073528.7, intron 1 of 1) 40088 ENSMUSG00000103225.1 ENSMUSG00000103225 ENSMUST00000194545 Gm37731 TEC Interval_162284 chr8 126752511 126752895 + 0 NA Intergenic Intergenic 5631 ENSMUSG00000110626.1 ENSMUSG00000110626 ENSMUST00000212695 Gm45805 lincRNA Interval_54042 chr14 64701302 64701996 + 0 NA intron (ENSMUSG00000060012.9, intron 2 of 2) protein_coding-intron (ENSMUSG00000060012.9, intron 2 of 39) 49089 ENSMUSG00000060012.9 ENSMUSG00000060012 ENSMUST00000224677 Kif13b protein_coding Interval_3440 chr1 58369790 58370374 + 0 NA intron (ENSMUSG00000079554.2, intron 34 of 35) protein_coding-intron (ENSMUSG00000079554.2, intron 34 of 35) 16052 ENSMUSG00000103839.1 ENSMUSG00000103839 ENSMUST00000194925 Gm37607 TEC Interval_78795 chr18 20679216 20679820 + 0 NA Intergenic Intergenic 3445 ENSMUSG00000091449.3 ENSMUSG00000091449 ENSMUST00000165229 Gm10269 processed_pseudogene Interval_16606 chr10 65058130 65058408 + 0 NA Intergenic Intergenic 62098 ENSMUSG00000100528.1 ENSMUSG00000100528 ENSMUST00000187710 Gm28881 lincRNA Interval_115204 chr4 94428744 94429001 + 0 NA Intergenic Intergenic -3284 ENSMUSG00000085931.1 ENSMUSG00000085931 ENSMUST00000126270 Gm12648 lincRNA Interval_64734 chr16 14636885 14637772 + 0 NA Intergenic Intergenic 57107 ENSMUSG00000075395.11 ENSMUSG00000075395 ENSMUST00000100165 A630010A05Rik protein_coding Interval_75284 chr17 65683706 65684103 + 0 NA intron (ENSMUSG00000056515.9, intron 5 of 6) protein_coding-intron (ENSMUSG00000056515.9, intron 5 of 6) -22326 ENSMUSG00000117114.1 ENSMUSG00000117114 ENSMUST00000233942 Gm49867 processed_pseudogene Interval_57980 chr15 25834567 25836277 + 0 NA Intergenic Intergenic 5189 ENSMUSG00000115593.1 ENSMUSG00000115593 ENSMUST00000228649 Gm4824 processed_pseudogene Interval_98939 chr2 156153761 156154037 + 0 NA intron (ENSMUSG00000027620.16, intron 13 of 17) protein_coding-intron (ENSMUSG00000027620.16, intron 13 of 16) 9659 ENSMUSG00000067847.13 ENSMUSG00000067847 ENSMUST00000119950 Romo1 protein_coding Interval_87156 chr19 46501243 46502319 + 0 NA promoter-TSS (ENSMUSG00000025034.9) protein_coding-promoter-TSS (ENSMUSG00000025034.9) -12879 ENSMUSG00000025034.9 ENSMUSG00000025034 ENSMUST00000235934 Trim8 protein_coding Interval_111397 chr4 20567160 20568646 + 0 NA intron (ENSMUSG00000055761.14, intron 1 of 5) protein_coding-intron (ENSMUSG00000055761.14, intron 1 of 4) 176807 ENSMUSG00000081964.1 ENSMUSG00000081964 ENSMUST00000117877 Gm11873 processed_pseudogene Interval_5561 chr1 89823313 89824213 + 0 NA intron (ENSMUSG00000055013.16, intron 12 of 16) protein_coding-intron (ENSMUSG00000055013.16, intron 13 of 17) -1718 ENSMUSG00000103252.1 ENSMUSG00000103252 ENSMUST00000193177 Gm37521 TEC Interval_77105 chr17 86601561 86602950 + 0 NA intron (ENSMUSG00000045038.14, intron 11 of 14) protein_coding-intron (ENSMUSG00000045038.14, intron 12 of 15) 83241 ENSMUSG00000117568.1 ENSMUSG00000117568 ENSMUST00000234033 Gm18832 processed_pseudogene Interval_102583 chr3 27982565 27982801 + 0 NA intron (ENSMUSG00000027695.16, intron 2 of 4) protein_coding-intron (ENSMUSG00000027695.16, intron 2 of 26) -86315 ENSMUSG00000043164.3 ENSMUSG00000043164 ENSMUST00000058077 Tmem212 protein_coding Interval_29332 chr11 83232292 83234274 + 0 NA intron (ENSMUSG00000083161.2, intron 2 of 4) transcribed_unprocessed_pseudogene-intron (ENSMUSG00000083161.2, intron 2 of 4) 8829 ENSMUSG00000083161.2 ENSMUSG00000083161 ENSMUST00000215482 Gm11427 transcribed_unprocessed_pseudogene Interval_37724 chr12 71437946 71438549 + 0 NA intron (ENSMUSG00000113441.1, intron 5 of 5) lincRNA-intron (ENSMUSG00000113441.1, intron 5 of 5) -50038 ENSMUSG00000113630.1 ENSMUSG00000113630 ENSMUST00000220948 4930404H11Rik lincRNA Interval_113173 chr4 48896874 48897261 + 0 NA TTS (ENSMUSG00000077417.1) snoRNA-TTS (ENSMUSG00000077417.1) 568 ENSMUSG00000077417.1 ENSMUSG00000077417 ENSMUST00000104229 Gm23746 snoRNA Interval_18876 chr10 91838561 91838917 + 0 NA Intergenic Intergenic -50090 ENSMUSG00000111657.1 ENSMUSG00000111657 ENSMUST00000217529 Gm31592 lincRNA Interval_149220 chr7 96384081 96385673 + 0 NA intron (ENSMUSG00000048078.16, intron 2 of 2) protein_coding-intron (ENSMUSG00000048078.16, intron 2 of 32) -42913 ENSMUSG00000085751.1 ENSMUSG00000085751 ENSMUST00000137193 Gm15412 antisense Interval_124405 chr5 45583850 45584766 + 0 NA exon (ENSMUSG00000015879.8, exon 2 of 16) protein_coding-exon (ENSMUSG00000015879.8, exon 2 of 16) 27628 ENSMUSG00000104837.1 ENSMUSG00000104837 ENSMUST00000199642 Gm42520 TEC Interval_54746 chr14 74643267 74644006 + 0 NA intron (ENSMUSG00000034997.5, intron 1 of 2) protein_coding-intron (ENSMUSG00000034997.5, intron 1 of 2) 2796 ENSMUSG00000034997.5 ENSMUSG00000034997 ENSMUST00000036653 Htr2a protein_coding Interval_12636 chr10 4056123 4056394 + 0 NA intron (ENSMUSG00000040675.17, intron 19 of 27) protein_coding-intron (ENSMUSG00000040675.17, intron 19 of 27) 23978 ENSMUSG00000040675.17 ENSMUSG00000040675 ENSMUST00000154517 Mthfd1l protein_coding Interval_44821 chr13 48914540 48914861 + 0 NA intron (ENSMUSG00000038014.7, intron 8 of 17) protein_coding-intron (ENSMUSG00000038014.7, intron 8 of 17) -43581 ENSMUSG00000038025.8 ENSMUSG00000038025 ENSMUST00000035540 Phf2 protein_coding Interval_160727 chr8 111853609 111856521 + 0 NA promoter-TSS (ENSMUSG00000031954.6) protein_coding-promoter-TSS (ENSMUSG00000031954.6) -774 ENSMUSG00000031954.6 ENSMUSG00000031954 ENSMUST00000034432 Cfdp1 protein_coding Interval_31732 chr11 102513093 102514402 + 0 NA intron (ENSMUSG00000034621.14, intron 4 of 5) protein_coding-intron (ENSMUSG00000034621.14, intron 4 of 5) -21138 ENSMUSG00000082487.1 ENSMUSG00000082487 ENSMUST00000117568 Gm11628 processed_pseudogene Interval_67785 chr16 57181281 57181506 + 0 NA TTS (ENSMUSG00000022749.8) protein_coding-TTS (ENSMUSG00000022749.8) 13992 ENSMUSG00000097876.1 ENSMUSG00000097876 ENSMUST00000180999 Gm16892 antisense Interval_138830 chr6 92268838 92270322 + 0 NA Intergenic Intergenic 1992 ENSMUSG00000108140.1 ENSMUSG00000108140 ENSMUST00000204384 Gm44803 processed_pseudogene Interval_59359 chr15 51876923 51878366 + 0 NA promoter-TSS (ENSMUSG00000022313.10) protein_coding-promoter-TSS (ENSMUSG00000022313.10) 166 ENSMUSG00000022313.10 ENSMUSG00000022313 ENSMUST00000136129 Utp23 protein_coding Interval_40710 chr12 107807489 107808502 + 0 NA Intergenic Intergenic -23954 ENSMUSG00000086975.1 ENSMUSG00000086975 ENSMUST00000134448 Gm15208 lincRNA Interval_120894 chr4 151386585 151387703 + 0 NA intron (ENSMUSG00000014592.21, intron 5 of 24) protein_coding-intron (ENSMUSG00000014592.21, intron 5 of 23) 10674 ENSMUSG00000085593.1 ENSMUSG00000085593 ENSMUST00000129097 4930589P08Rik antisense Interval_94236 chr2 86071124 86071806 + 0 NA Intergenic Intergenic -2527 ENSMUSG00000099820.2 ENSMUSG00000099820 ENSMUST00000164985 Olfr1036 protein_coding Interval_174337 chrX 145089106 145089622 + 0 NA intron (ENSMUSG00000071679.4, intron 2 of 6) protein_coding-intron (ENSMUSG00000071679.4, intron 2 of 6) 50020 ENSMUSG00000092917.1 ENSMUSG00000092917 ENSMUST00000175176 Mir3472 miRNA Interval_3372 chr1 57526852 57527153 + 0 NA Intergenic Intergenic -3360 ENSMUSG00000102685.1 ENSMUSG00000102685 ENSMUST00000194005 Gm37373 TEC Interval_55286 chr14 80269330 80269554 + 0 NA Intergenic Intergenic 54512 ENSMUSG00000115334.1 ENSMUSG00000115334 ENSMUST00000226677 Gm17923 processed_pseudogene Interval_96308 chr2 121434495 121435555 + 0 NA intron (ENSMUSG00000027248.13, intron 10 of 12) protein_coding-intron (ENSMUSG00000027248.13, intron 10 of 12) 6126 ENSMUSG00000027246.12 ENSMUSG00000027246 ENSMUST00000153866 Ell3 protein_coding Interval_4248 chr1 72163995 72164818 + 0 NA intron (ENSMUSG00000039395.8, intron 2 of 4) protein_coding-intron (ENSMUSG00000039395.8, intron 2 of 4) -42405 ENSMUSG00000102123.1 ENSMUSG00000102123 ENSMUST00000191139 Gm4319 lincRNA Interval_80971 chr18 51772294 51772621 + 0 NA Intergenic Intergenic 93424 ENSMUSG00000069379.3 ENSMUSG00000069379 ENSMUST00000091905 Gm4950 processed_pseudogene Interval_124395 chr5 45501526 45502209 + 0 NA intron (ENSMUSG00000039682.12, intron 3 of 3) protein_coding-intron (ENSMUSG00000039682.12, intron 6 of 12) 8341 ENSMUSG00000039682.12 ENSMUSG00000039682 ENSMUST00000146811 Lap3 protein_coding Interval_135764 chr6 47121504 47122246 + 0 NA intron (ENSMUSG00000039419.17, intron 20 of 23) protein_coding-intron (ENSMUSG00000039419.17, intron 20 of 23) 76719 ENSMUSG00000107952.1 ENSMUSG00000107952 ENSMUST00000203583 Gm6352 processed_pseudogene Interval_18195 chr10 83617293 83617817 + 0 NA intron (ENSMUSG00000020263.14, intron 8 of 13) protein_coding-intron (ENSMUSG00000020263.14, intron 8 of 20) -14425 ENSMUSG00000020263.14 ENSMUSG00000020263 ENSMUST00000176294 Appl2 protein_coding Interval_141854 chr6 134945801 134946541 + 0 NA intron (ENSMUSG00000098318.7, intron 2 of 2) lincRNA-intron (ENSMUSG00000098318.7, intron 1 of 1) -16059 ENSMUSG00000107730.1 ENSMUSG00000107730 ENSMUST00000203300 Gm44238 lincRNA Interval_69040 chr16 90254041 90254585 + 0 NA intron (ENSMUSG00000022983.16, intron 7 of 19) protein_coding-intron (ENSMUSG00000022983.16, intron 7 of 19) 30190 ENSMUSG00000022983.16 ENSMUSG00000022983 ENSMUST00000231776 Scaf4 protein_coding Interval_168351 chr9 79341541 79342952 + 0 NA TTS (ENSMUSG00000110856.1) processed_pseudogene-TTS (ENSMUSG00000110856.1) 694 ENSMUSG00000110856.1 ENSMUSG00000110856 ENSMUST00000214232 Gm49264 processed_pseudogene Interval_156804 chr8 60616789 60617085 + 0 NA exon (ENSMUSG00000109930.1, exon 3 of 3) bidirectional_promoter_lncRNA-exon (ENSMUSG00000109930.1, exon 3 of 3) 15794 ENSMUSG00000109930.1 ENSMUSG00000109930 ENSMUST00000210674 Gm34730 bidirectional_promoter_lncRNA Interval_31606 chr11 101664941 101665994 + 0 NA promoter-TSS (ENSMUSG00000034936.2) protein_coding-promoter-TSS (ENSMUSG00000034936.2) -74 ENSMUSG00000034936.2 ENSMUSG00000034936 ENSMUST00000039388 Arl4d protein_coding Interval_146169 chr7 44495742 44497171 + 0 NA promoter-TSS (ENSMUSG00000051113.9) protein_coding-promoter-TSS (ENSMUSG00000051113.9) 57 ENSMUSG00000008140.18 ENSMUSG00000008140 ENSMUST00000123928 Emc10 protein_coding Interval_59566 chr15 55395841 55396275 + 0 NA intron (ENSMUSG00000022371.16, intron 14 of 47) protein_coding-intron (ENSMUSG00000022371.16, intron 14 of 47) 42962 ENSMUSG00000101568.1 ENSMUSG00000101568 ENSMUST00000187158 1700040F17Rik antisense Interval_43713 chr13 35738014 35738553 + 0 NA intron (ENSMUSG00000059288.14, intron 3 of 5) protein_coding-intron (ENSMUSG00000059288.14, intron 3 of 9) -24529 ENSMUSG00000059288.14 ENSMUSG00000059288 ENSMUST00000226071 Cdyl protein_coding Interval_173647 chrX 101449794 101450137 + 0 NA intron (ENSMUSG00000031312.5, intron 4 of 10) protein_coding-intron (ENSMUSG00000031312.5, intron 4 of 10) -2146 ENSMUSG00000031312.5 ENSMUSG00000031312 ENSMUST00000143946 Itgb1bp2 protein_coding Interval_26591 chr11 59085057 59085760 + 0 NA intron (ENSMUSG00000061462.18, intron 20 of 114) protein_coding-intron (ENSMUSG00000061462.18, intron 20 of 89) 50967 ENSMUSG00000061462.18 ENSMUSG00000061462 ENSMUST00000133040 Obscn protein_coding Interval_148126 chr7 79381585 79381890 + 0 NA TTS (ENSMUSG00000039194.16) protein_coding-TTS (ENSMUSG00000039194.16) 5175 ENSMUSG00000039194.16 ENSMUSG00000039194 ENSMUST00000206695 Rlbp1 protein_coding Interval_54165 chr14 65849046 65849620 + 0 NA intron (ENSMUSG00000022035.6, intron 3 of 7) protein_coding-intron (ENSMUSG00000022035.6, intron 3 of 8) 11973 ENSMUSG00000022035.6 ENSMUSG00000022035 ENSMUST00000226027 Ccdc25 protein_coding Interval_173171 chrX 73786230 73787596 + 0 NA promoter-TSS (ENSMUSG00000002014.12) protein_coding-promoter-TSS (ENSMUSG00000002014.12) -16 ENSMUSG00000002010.17 ENSMUSG00000002010 ENSMUST00000145341 Idh3g protein_coding Interval_150137 chr7 107242547 107243215 + 0 NA promoter-TSS (ENSMUSG00000057215.6) lincRNA-promoter-TSS (ENSMUSG00000057215.6) -141 ENSMUSG00000057215.6 ENSMUSG00000057215 ENSMUST00000133824 Platr28 lincRNA Interval_168513 chr9 82884517 82884804 + 0 NA intron (ENSMUSG00000032253.13, intron 9 of 16) protein_coding-intron (ENSMUSG00000032253.13, intron 32 of 39) 16453 ENSMUSG00000032253.13 ENSMUSG00000032253 ENSMUST00000190838 Phip protein_coding Interval_92504 chr2 60178173 60178506 + 0 NA intron (ENSMUSG00000026987.16, intron 1 of 3) protein_coding-intron (ENSMUSG00000026987.16, intron 1 of 3) -31574 ENSMUSG00000026977.17 ENSMUSG00000026977 ENSMUST00000136367 Marchf7 protein_coding Interval_80273 chr18 38689253 38689458 + 0 NA intron (ENSMUSG00000118193.1, intron 1 of 5) lincRNA-intron (ENSMUSG00000118257.1, intron 3 of 3) 12637 ENSMUSG00000118193.1 ENSMUSG00000118193 ENSMUST00000148850 Arhgap26 protein_coding Interval_149677 chr7 100576716 100577624 + 0 NA intron (ENSMUSG00000030706.17, intron 1 of 7) protein_coding-intron (ENSMUSG00000030706.17, intron 1 of 6) -3097 ENSMUSG00000081359.1 ENSMUSG00000081359 ENSMUST00000119872 Cox20b processed_pseudogene Interval_130122 chr5 124414501 124414902 + 0 NA promoter-TSS (ENSMUSG00000038095.15) protein_coding-promoter-TSS (ENSMUSG00000038095.15) -8972 ENSMUSG00000038095.15 ENSMUSG00000038095 ENSMUST00000197974 Sbno1 protein_coding Interval_134175 chr6 22363557 22364235 + 0 NA Intergenic Intergenic -19983 ENSMUSG00000029672.16 ENSMUSG00000029672 ENSMUST00000168965 Fam3c protein_coding Interval_107639 chr3 109122491 109124007 + 0 NA promoter-TSS (ENSMUSG00000040322.10) protein_coding-promoter-TSS (ENSMUSG00000040322.10) 87 ENSMUSG00000040322.10 ENSMUSG00000040322 ENSMUST00000140786 Slc25a24 protein_coding Interval_79507 chr18 32484980 32486199 + 0 NA intron (ENSMUSG00000109232.1, intron 3 of 3) bidirectional_promoter_lncRNA-intron (ENSMUSG00000109232.1, intron 3 of 3) -13000 ENSMUSG00000109238.2 ENSMUSG00000109238 ENSMUST00000207671 Gm35060 protein_coding Interval_43369 chr13 29777451 29777933 + 0 NA intron (ENSMUSG00000006191.17, intron 4 of 10) protein_coding-intron (ENSMUSG00000006191.17, intron 4 of 15) -162591 ENSMUSG00000086893.1 ENSMUSG00000086893 ENSMUST00000144277 Gm11365 antisense Interval_114466 chr4 79627942 79628652 + 0 NA Intergenic Intergenic -246054 ENSMUSG00000084248.1 ENSMUSG00000084248 ENSMUST00000118621 Gm11409 processed_pseudogene Interval_76220 chr17 77966342 77966581 + 0 NA Intergenic Intergenic -142547 ENSMUSG00000117352.1 ENSMUSG00000117352 ENSMUST00000234287 Gm50029 processed_pseudogene Interval_171228 chr9 115402599 115403462 + 0 NA Intergenic Intergenic -2119 ENSMUSG00000111530.1 ENSMUSG00000111530 ENSMUST00000216600 Gm9487 processed_pseudogene Interval_35337 chr12 20805256 20807847 + 0 NA intron (ENSMUSG00000099759.1, intron 1 of 1) processed_transcript-intron (ENSMUSG00000099759.1, intron 1 of 1) -1843 ENSMUSG00000101813.1 ENSMUSG00000101813 ENSMUST00000185966 Gm28503 transcribed_processed_pseudogene Interval_144509 chr7 25582098 25582872 + 0 NA Intergenic Intergenic -1739 ENSMUSG00000108553.1 ENSMUSG00000108553 ENSMUST00000205476 Gm38569 lincRNA Interval_4470 chr1 74396796 74398584 + 0 NA TTS (ENSMUSG00000026176.13) protein_coding-TTS (ENSMUSG00000026176.13) 3380 ENSMUSG00000065468.1 ENSMUSG00000065468 ENSMUST00000083534 Mir26b miRNA Interval_83857 chr19 5129072 5130190 + 0 NA Intergenic Intergenic 3341 ENSMUSG00000117729.1 ENSMUSG00000117729 ENSMUST00000237684 Gm5242 processed_pseudogene Interval_67499 chr16 49946688 49947445 + 0 NA Intergenic Intergenic 91421 ENSMUSG00000055447.19 ENSMUSG00000055447 ENSMUST00000229104 Cd47 protein_coding Interval_58129 chr15 28226827 28228176 + 0 NA intron (ENSMUSG00000022262.8, intron 3 of 78) protein_coding-intron (ENSMUSG00000022262.8, intron 3 of 78) 23749 ENSMUSG00000022262.8 ENSMUSG00000022262 ENSMUST00000067048 Dnah5 protein_coding Interval_156179 chr8 45627396 45628243 + 0 NA promoter-TSS (ENSMUSG00000031626.18) protein_coding-promoter-TSS (ENSMUSG00000031626.18) -22679 ENSMUSG00000084954.2 ENSMUSG00000084954 ENSMUST00000142008 Gm16351 antisense Interval_150772 chr7 114275465 114276717 + 0 NA promoter-TSS (ENSMUSG00000030751.18) protein_coding-promoter-TSS (ENSMUSG00000030751.18) -24 ENSMUSG00000030751.18 ENSMUSG00000030751 ENSMUST00000210966 Psma1 protein_coding Interval_43907 chr13 37979163 37979919 + 0 NA exon (ENSMUSG00000021427.10, exon 8 of 8) protein_coding-exon (ENSMUSG00000021427.10, exon 8 of 8) 14542 ENSMUSG00000021427.10 ENSMUSG00000021427 ENSMUST00000224399 Ssr1 protein_coding Interval_68138 chr16 65607812 65608161 + 0 NA Intergenic Intergenic 5433 ENSMUSG00000116578.1 ENSMUSG00000116578 ENSMUST00000232570 Gm49633 processed_pseudogene Interval_174788 chrX 166621458 166622467 + 0 NA promoter-TSS (ENSMUSG00000087677.1) lincRNA-promoter-TSS (ENSMUSG00000087677.1) -420 ENSMUSG00000087677.1 ENSMUSG00000087677 ENSMUST00000156526 Gm15226 lincRNA Interval_4979 chr1 83176769 83177085 + 0 NA intron (ENSMUSG00000053161.16, intron 1 of 1) protein_coding-intron (ENSMUSG00000053161.16, intron 1 of 12) 17158 ENSMUSG00000053161.16 ENSMUSG00000053161 ENSMUST00000065403 Daw1 protein_coding Interval_141228 chr6 125925469 125925678 + 0 NA intron (ENSMUSG00000038115.16, intron 15 of 25) protein_coding-intron (ENSMUSG00000038115.16, intron 15 of 15) 41158 ENSMUSG00000088959.1 ENSMUSG00000088959 ENSMUST00000158334 Gm24947 snRNA Interval_129675 chr5 121659962 121661191 + 0 NA promoter-TSS (ENSMUSG00000029456.12) protein_coding-promoter-TSS (ENSMUSG00000029456.12) -22352 ENSMUSG00000029458.14 ENSMUSG00000029458 ENSMUST00000196897 Brap protein_coding Interval_66105 chr16 31642023 31642206 + 0 NA Intergenic Intergenic 24379 ENSMUSG00000116597.1 ENSMUSG00000116597 ENSMUST00000232209 Gm536 lincRNA Interval_135758 chr6 47044510 47045222 + 0 NA promoter-TSS (ENSMUSG00000039419.17) protein_coding-promoter-TSS (ENSMUSG00000039419.17) -290 ENSMUSG00000107952.1 ENSMUSG00000107952 ENSMUST00000203583 Gm6352 processed_pseudogene Interval_2421 chr1 39192403 39194682 + 0 NA promoter-TSS (ENSMUSG00000026077.15) protein_coding-promoter-TSS (ENSMUSG00000026077.15) -189 ENSMUSG00000026077.15 ENSMUSG00000026077 ENSMUST00000172825 Npas2 protein_coding Interval_121684 chr5 5266213 5266911 + 0 NA promoter-TSS (ENSMUSG00000028926.15) protein_coding-promoter-TSS (ENSMUSG00000028926.15) 40440 ENSMUSG00000106202.1 ENSMUSG00000106202 ENSMUST00000198021 Gm43727 sense_intronic Interval_157879 chr8 75158685 75158916 + 0 NA Intergenic Intergenic -17658 ENSMUSG00000110693.1 ENSMUSG00000110693 ENSMUST00000212196 Gm45899 lincRNA Interval_156327 chr8 47412408 47414325 + 0 NA exon (ENSMUSG00000038143.16, exon 7 of 8) protein_coding-exon (ENSMUSG00000038143.16, exon 7 of 8) 471 ENSMUSG00000038143.16 ENSMUSG00000038143 ENSMUST00000181417 Stox2 protein_coding Interval_22102 chr11 6357575 6358505 + 0 NA Intergenic Intergenic -38689 ENSMUSG00000041164.15 ENSMUSG00000041164 ENSMUST00000124588 Zmiz2 protein_coding Interval_61112 chr15 79305999 79306855 + 0 NA promoter-TSS (ENSMUSG00000042632.17) protein_coding-promoter-TSS (ENSMUSG00000042632.17) -7769 ENSMUSG00000092494.2 ENSMUSG00000092494 ENSMUST00000173178 Gm20420 antisense Interval_77740 chr17 94824950 94825350 + 0 NA intron (ENSMUSG00000066057.7, intron 1 of 4) processed_transcript-intron (ENSMUSG00000066057.7, intron 1 of 3) -9087 ENSMUSG00000117499.1 ENSMUSG00000117499 ENSMUST00000234240 Gm50010 TEC Interval_19712 chr10 108244547 108244783 + 0 NA intron (ENSMUSG00000019907.10, intron 9 of 24) protein_coding-intron (ENSMUSG00000019907.10, intron 9 of 25) -4929 ENSMUSG00000019907.10 ENSMUSG00000019907 ENSMUST00000219559 Ppp1r12a protein_coding Interval_18370 chr10 85351748 85352331 + 0 NA Intergenic Intergenic 18138 ENSMUSG00000087895.1 ENSMUSG00000087895 ENSMUST00000157270 Gm25281 miRNA Interval_83235 chr18 82913184 82915017 + 0 NA promoter-TSS (ENSMUSG00000058881.13) protein_coding-promoter-TSS (ENSMUSG00000058881.13) -3654 ENSMUSG00000058881.13 ENSMUSG00000058881 ENSMUST00000236468 Zfp516 protein_coding Interval_3064 chr1 52816934 52818056 + 0 NA promoter-TSS (ENSMUSG00000026102.9) protein_coding-promoter-TSS (ENSMUSG00000026102.9) -18007 ENSMUSG00000026102.9 ENSMUSG00000026102 ENSMUST00000159725 Inpp1 protein_coding Interval_93320 chr2 71907713 71908494 + 0 NA Intergenic Intergenic 34757 ENSMUSG00000006494.11 ENSMUSG00000006494 ENSMUST00000129427 Pdk1 protein_coding Interval_127759 chr5 107488551 107489380 + 0 NA intron (ENSMUSG00000111375.4, intron 7 of 8) protein_coding-intron (ENSMUSG00000111375.4, intron 7 of 8) -9885 ENSMUSG00000089628.1 ENSMUSG00000089628 ENSMUST00000161387 Gm9727 processed_pseudogene Interval_103813 chr3 53230552 53231769 + 0 NA exon (ENSMUSG00000048332.13, exon 1 of 1) protein_coding-exon (ENSMUSG00000048332.13, exon 1 of 1) 1835 ENSMUSG00000048332.13 ENSMUSG00000048332 ENSMUST00000196913 Lhfp protein_coding Interval_82909 chr18 78787568 78787788 + 0 NA intron (ENSMUSG00000024548.11, intron 4 of 5) protein_coding-intron (ENSMUSG00000024548.11, intron 4 of 5) 139550 ENSMUSG00000088733.1 ENSMUSG00000088733 ENSMUST00000158108 Gm23895 snRNA Interval_63203 chr15 99714514 99715436 + 0 NA TTS (ENSMUSG00000023018.5) protein_coding-TTS (ENSMUSG00000023018.5) -2604 ENSMUSG00000023019.12 ENSMUSG00000023019 ENSMUST00000161768 Gpd1 protein_coding Interval_131592 chr5 138464237 138464524 + 0 NA Intergenic Intergenic 22869 ENSMUSG00000036898.16 ENSMUSG00000036898 ENSMUST00000100524 Zfp157 protein_coding Interval_99432 chr2 161004219 161004530 + 0 NA intron (ENSMUSG00000057133.14, intron 1 of 1) protein_coding-intron (ENSMUSG00000057133.14, intron 17 of 36) 7597 ENSMUSG00000077795.1 ENSMUSG00000077795 ENSMUST00000104607 Gm25561 snoRNA Interval_160481 chr8 109884955 109885810 + 0 NA intron (ENSMUSG00000031732.12, intron 2 of 18) protein_coding-intron (ENSMUSG00000031732.12, intron 2 of 18) 16779 ENSMUSG00000031732.12 ENSMUSG00000031732 ENSMUST00000034175 Phlpp2 protein_coding Interval_36196 chr12 38788646 38788970 + 0 NA intron (ENSMUSG00000004151.17, intron 1 of 8) protein_coding-intron (ENSMUSG00000004151.17, intron 4 of 12) -30735 ENSMUSG00000004151.17 ENSMUSG00000004151 ENSMUST00000161591 Etv1 protein_coding Interval_36200 chr12 38847736 38847944 + 0 NA intron (ENSMUSG00000004151.17, intron 1 of 5) protein_coding-intron (ENSMUSG00000004151.17, intron 8 of 12) -27564 ENSMUSG00000113229.1 ENSMUSG00000113229 ENSMUST00000220925 Gm18442 processed_pseudogene Interval_155259 chr8 29056494 29056732 + 0 NA intron (ENSMUSG00000063626.6, intron 1 of 14) protein_coding-intron (ENSMUSG00000063626.6, intron 1 of 17) 30873 ENSMUSG00000109874.1 ENSMUSG00000109874 ENSMUST00000211467 Gm9911 TEC Interval_141694 chr6 133597145 133597362 + 0 NA promoter-TSS (ENSMUSG00000107765.1) unprocessed_pseudogene-promoter-TSS (ENSMUSG00000107765.1) -32 ENSMUSG00000107765.1 ENSMUSG00000107765 ENSMUST00000204606 Gm34224 unprocessed_pseudogene Interval_95244 chr2 105130341 105131032 + 0 NA promoter-TSS (ENSMUSG00000016458.15) protein_coding-promoter-TSS (ENSMUSG00000016458.15) -4283 ENSMUSG00000074987.9 ENSMUSG00000074987 ENSMUST00000174870 Wt1os antisense Interval_78410 chr18 12617830 12618028 + 0 NA intron (ENSMUSG00000024424.15, intron 1 of 7) protein_coding-intron (ENSMUSG00000024424.15, intron 1 of 13) 18033 ENSMUSG00000024424.15 ENSMUSG00000024424 ENSMUST00000143388 Ttc39c protein_coding Interval_3379 chr1 57620315 57620634 + 0 NA Intergenic Intergenic -56423 ENSMUSG00000101151.1 ENSMUSG00000101151 ENSMUST00000186851 Gm17929 processed_pseudogene Interval_2738 chr1 44041774 44042566 + 0 NA Intergenic Intergenic -23521 ENSMUSG00000090106.1 ENSMUSG00000090106 ENSMUST00000161575 Gm15838 processed_pseudogene Interval_139542 chr6 100878729 100879878 + 0 NA Intergenic Intergenic 26818 ENSMUSG00000052144.8 ENSMUSG00000052144 ENSMUST00000203067 Ppp4r2 protein_coding Interval_48781 chr13 103185952 103187065 + 0 NA intron (ENSMUSG00000034751.17, intron 1 of 3) protein_coding-intron (ENSMUSG00000034751.17, intron 1 of 4) -25670 ENSMUSG00000091577.2 ENSMUSG00000091577 ENSMUST00000167849 Gm6211 transcribed_processed_pseudogene Interval_28935 chr11 79366738 79366979 + 0 NA intron (ENSMUSG00000020716.16, intron 1 of 30) protein_coding-intron (ENSMUSG00000020716.16, intron 1 of 57) 5372 ENSMUSG00000082304.1 ENSMUSG00000082304 ENSMUST00000119771 Gm11198 processed_pseudogene Interval_8504 chr1 140317633 140318257 + 0 NA intron (ENSMUSG00000052726.16, intron 1 of 27) protein_coding-intron (ENSMUSG00000052726.16, intron 1 of 26) 51458 ENSMUSG00000102698.1 ENSMUSG00000102698 ENSMUST00000195546 Gm37777 TEC Interval_61906 chr15 85065546 85066606 + 0 NA intron (ENSMUSG00000022432.7, intron 24 of 24) protein_coding-intron (ENSMUSG00000022432.7, intron 24 of 24) 24839 ENSMUSG00000022432.7 ENSMUSG00000022432 ENSMUST00000227591 Smc1b protein_coding Interval_72354 chr17 29381167 29381925 + 0 NA Intergenic Intergenic 8195 ENSMUSG00000024013.15 ENSMUSG00000024013 ENSMUST00000144616 Fgd2 protein_coding Interval_9387 chr1 156718286 156719537 + 0 NA exon (ENSMUSG00000033557.17, exon 1 of 8) protein_coding-exon (ENSMUSG00000033557.17, exon 1 of 8) -20026 ENSMUSG00000033557.17 ENSMUSG00000033557 ENSMUST00000147931 Fam20b protein_coding Interval_141432 chr6 128254224 128256561 + 0 NA intron (ENSMUSG00000030353.15, intron 2 of 11) protein_coding-intron (ENSMUSG00000030353.15, intron 2 of 11) -38710 ENSMUSG00000095262.2 ENSMUSG00000095262 ENSMUST00000179119 Gm21893 processed_pseudogene Interval_169429 chr9 97171301 97172683 + 0 NA Intergenic Intergenic -7187 ENSMUSG00000101502.1 ENSMUSG00000101502 ENSMUST00000190579 Rpl7a-ps10 processed_pseudogene Interval_3639 chr1 60203391 60203729 + 0 NA intron (ENSMUSG00000073664.11, intron 6 of 54) protein_coding-intron (ENSMUSG00000073664.11, intron 6 of 54) 64068 ENSMUSG00000100516.1 ENSMUSG00000100516 ENSMUST00000190829 Gm29332 processed_pseudogene Interval_148084 chr7 79129953 79131502 + 0 NA intron (ENSMUSG00000030606.8, intron 1 of 4) protein_coding-intron (ENSMUSG00000030606.8, intron 1 of 4) -2048 ENSMUSG00000030606.8 ENSMUSG00000030606 ENSMUST00000206402 Hapln3 protein_coding Interval_149333 chr7 97501010 97501244 + 0 NA promoter-TSS (ENSMUSG00000025133.9) protein_coding-promoter-TSS (ENSMUSG00000025133.9) -20681 ENSMUSG00000065360.1 ENSMUSG00000065360 ENSMUST00000083426 Gm24412 snoRNA Interval_61190 chr15 79860803 79862513 + 0 NA Intergenic Intergenic -12211 ENSMUSG00000116283.1 ENSMUSG00000116283 ENSMUST00000229056 Gm49412 TEC Interval_171609 chr9 119517456 119517728 + 0 NA exon (ENSMUSG00000032511.17, exon 16 of 27) protein_coding-exon (ENSMUSG00000032511.17, exon 16 of 27) 45911 ENSMUSG00000032511.17 ENSMUSG00000032511 ENSMUST00000138934 Scn5a protein_coding Interval_78974 chr18 23457838 23458454 + 0 NA intron (ENSMUSG00000024302.16, intron 1 of 17) protein_coding-intron (ENSMUSG00000024302.16, intron 1 of 11) -38689 ENSMUSG00000024302.16 ENSMUSG00000024302 ENSMUST00000222726 Dtna protein_coding Interval_140281 chr6 116045589 116045790 + 0 NA intron (ENSMUSG00000030126.17, intron 3 of 5) protein_coding-intron (ENSMUSG00000030126.17, intron 2 of 4) 12360 ENSMUSG00000030126.17 ENSMUSG00000030126 ENSMUST00000204574 Tmcc1 protein_coding Interval_51901 chr14 33588548 33589712 + 0 NA promoter-TSS (ENSMUSG00000021940.10) protein_coding-promoter-TSS (ENSMUSG00000021940.10) -13979 ENSMUSG00000021940.10 ENSMUSG00000021940 ENSMUST00000226512 Ptpn20 protein_coding Interval_124426 chr5 46172135 46173199 + 0 NA Intergenic Intergenic -240258 ENSMUSG00000106602.1 ENSMUSG00000106602 ENSMUST00000198088 4930405L22Rik lincRNA Interval_43877 chr13 37799605 37800237 + 0 NA promoter-TSS (ENSMUSG00000114370.1) antisense-promoter-TSS (ENSMUSG00000114370.1) -131 ENSMUSG00000114370.1 ENSMUSG00000114370 ENSMUST00000224624 Gm46411 antisense Interval_48289 chr13 97801786 97802892 + 0 NA intron (ENSMUSG00000114348.1, intron 2 of 2) lincRNA-intron (ENSMUSG00000114348.1, intron 2 of 2) 11775 ENSMUSG00000114294.1 ENSMUSG00000114294 ENSMUST00000225757 Gm47577 TEC Interval_49201 chr13 109406758 109408240 + 0 NA intron (ENSMUSG00000021699.17, intron 2 of 5) protein_coding-intron (ENSMUSG00000021699.17, intron 1 of 14) 82755 ENSMUSG00000076946.2 ENSMUSG00000076946 ENSMUST00000103758 Mir582 miRNA Interval_106075 chr3 92628284 92628531 + 0 NA Intergenic Intergenic -7227 ENSMUSG00000086848.3 ENSMUSG00000086848 ENSMUST00000170676 Lce6a protein_coding Interval_79225 chr18 25998926 25999513 + 0 NA Intergenic Intergenic -8338 ENSMUSG00000117604.1 ENSMUSG00000117604 ENSMUST00000234272 Gm33228 processed_transcript Interval_157684 chr8 72284989 72285422 + 0 NA Intergenic Intergenic -1051 ENSMUSG00000110443.1 ENSMUSG00000110443 ENSMUST00000212069 Gm39197 processed_pseudogene Interval_93751 chr2 76596234 76596401 + 0 NA TTS (ENSMUSG00000042359.18) protein_coding-TTS (ENSMUSG00000042359.18) 44416 ENSMUSG00000002731.6 ENSMUSG00000002731 ENSMUST00000140493 Prkra protein_coding Interval_124947 chr5 61401319 61401628 + 0 NA Intergenic Intergenic -62740 ENSMUSG00000106370.2 ENSMUSG00000106370 ENSMUST00000198954 Gm43382 processed_pseudogene Interval_15959 chr10 59642297 59642560 + 0 NA Intergenic Intergenic -25773 ENSMUSG00000009647.13 ENSMUSG00000009647 ENSMUST00000162012 Mcu protein_coding Interval_123409 chr5 32335087 32335666 + 0 NA intron (ENSMUSG00000029134.14, intron 44 of 58) protein_coding-intron (ENSMUSG00000029134.14, intron 43 of 57) 19507 ENSMUSG00000107078.1 ENSMUSG00000107078 ENSMUST00000202688 Gm36840 antisense Interval_20468 chr10 117786068 117786695 + 0 NA intron (ENSMUSG00000052798.13, intron 3 of 8) protein_coding-intron (ENSMUSG00000052798.13, intron 4 of 27) 6270 ENSMUSG00000052798.13 ENSMUSG00000052798 ENSMUST00000220203 Nup107 protein_coding Interval_110885 chr4 9530415 9530902 + 0 NA intron (ENSMUSG00000028207.18, intron 15 of 22) protein_coding-intron (ENSMUSG00000028207.18, intron 16 of 23) -83459 ENSMUSG00000087564.1 ENSMUSG00000087564 ENSMUST00000155578 Gm11817 antisense Interval_57181 chr15 7180398 7180641 + 0 NA intron (ENSMUSG00000054263.12, intron 13 of 15) protein_coding-intron (ENSMUSG00000054263.12, intron 13 of 19) 74249 ENSMUSG00000042961.13 ENSMUSG00000042961 ENSMUST00000159726 Egflam protein_coding Interval_160991 chr8 116707553 116708108 + 0 NA intron (ENSMUSG00000031758.10, intron 1 of 6) protein_coding-intron (ENSMUSG00000031758.10, intron 1 of 6) 25161 ENSMUSG00000031758.10 ENSMUSG00000031758 ENSMUST00000109102 Cdyl2 protein_coding Interval_105528 chr3 87323965 87324399 + 0 NA Intergenic Intergenic -33699 ENSMUSG00000015854.7 ENSMUSG00000015854 ENSMUST00000015998 Cd5l protein_coding Interval_168032 chr9 75488145 75488533 + 0 NA Intergenic Intergenic 5488 ENSMUSG00000109032.1 ENSMUSG00000109032 ENSMUST00000209180 Gm7972 transcribed_unprocessed_pseudogene Interval_42311 chr13 11978613 11979690 + 0 NA intron (ENSMUSG00000021313.16, intron 1 of 2) protein_coding-intron (ENSMUSG00000021313.16, intron 1 of 104) 39593 ENSMUSG00000098110.1 ENSMUSG00000098110 ENSMUST00000182176 Gm26956 processed_pseudogene Interval_13863 chr10 24042934 24044201 + 0 NA Intergenic Intergenic -2025 ENSMUSG00000082960.1 ENSMUSG00000082960 ENSMUST00000119318 Gm6884 processed_pseudogene Interval_104421 chr3 65491305 65492875 + 0 NA Intergenic Intergenic 2945 ENSMUSG00000103513.1 ENSMUSG00000103513 ENSMUST00000193896 Gm34780 TEC Interval_89453 chr2 20753092 20754600 + 0 NA intron (ENSMUSG00000036617.17, intron 2 of 7) protein_coding-intron (ENSMUSG00000036617.17, intron 7 of 18) -40612 ENSMUSG00000086418.1 ENSMUSG00000086418 ENSMUST00000137186 Gm13362 antisense Interval_41720 chr12 118291109 118291339 + 0 NA intron (ENSMUSG00000025323.10, intron 1 of 1) protein_coding-intron (ENSMUSG00000025323.10, intron 3 of 5) 10144 ENSMUSG00000025323.10 ENSMUSG00000025323 ENSMUST00000221844 Sp4 protein_coding Interval_174563 chrX 157853189 157853885 + 0 NA exon (ENSMUSG00000025658.16, exon 20 of 22) protein_coding-exon (ENSMUSG00000025658.16, exon 20 of 22) 13334 ENSMUSG00000025658.16 ENSMUSG00000025658 ENSMUST00000139664 Cnksr2 protein_coding Interval_101514 chr3 3364013 3364826 + 0 NA Intergenic Intergenic -97392 ENSMUSG00000103028.1 ENSMUSG00000103028 ENSMUST00000195392 Gm8747 processed_pseudogene Interval_50985 chr14 21499389 21501576 + 0 NA promoter-TSS (ENSMUSG00000021767.19) protein_coding-promoter-TSS (ENSMUSG00000021767.19) -16393 ENSMUSG00000021767.19 ENSMUSG00000021767 ENSMUST00000226589 Kat6b protein_coding Interval_132035 chr5 142420489 142420678 + 0 NA TTS (ENSMUSG00000056493.9) protein_coding-TTS (ENSMUSG00000056493.9) 19086 ENSMUSG00000056493.9 ENSMUSG00000056493 ENSMUST00000072837 Foxk1 protein_coding Interval_1847 chr1 34113932 34114763 + 0 NA intron (ENSMUSG00000026131.20, intron 3 of 5) protein_coding-intron (ENSMUSG00000026131.20, intron 3 of 97) -3012 ENSMUSG00000105982.1 ENSMUSG00000105982 ENSMUST00000198033 Mir6896 miRNA Interval_131328 chr5 136508734 136508981 + 0 NA intron (ENSMUSG00000029705.17, intron 1 of 1) protein_coding-intron (ENSMUSG00000029705.17, intron 1 of 23) 27620 ENSMUSG00000104369.1 ENSMUSG00000104369 ENSMUST00000192800 Gm38082 TEC Interval_122152 chr5 18336272 18336575 + 0 NA intron (ENSMUSG00000057614.6, intron 1 of 7) protein_coding-intron (ENSMUSG00000057614.6, intron 1 of 7) -13925 ENSMUSG00000104540.1 ENSMUSG00000104540 ENSMUST00000198905 Gm3527 processed_pseudogene Interval_41514 chr12 115622908 115623220 + 0 NA TTS (ENSMUSG00000094502.5) IG_V_gene-TTS (ENSMUSG00000094502.5) 531 ENSMUSG00000094502.5 ENSMUSG00000094502 ENSMUST00000103539 Ighv1-69 IG_V_gene Interval_93136 chr2 70526442 70526709 + 0 NA intron (ENSMUSG00000075302.10, intron 6 of 6) protein_coding-intron (ENSMUSG00000075302.10, intron 7 of 12) -2808 ENSMUSG00000104076.1 ENSMUSG00000104076 ENSMUST00000191917 Gm37026 TEC Interval_33983 chr11 119833987 119834294 + 0 NA intron (ENSMUSG00000085081.1, intron 1 of 2) protein_coding-intron (ENSMUSG00000025583.15, intron 13 of 33) 225 ENSMUSG00000085081.1 ENSMUSG00000085081 ENSMUST00000127450 Rptoros antisense Interval_144435 chr7 25141773 25142242 + 0 NA intron (ENSMUSG00000008496.19, intron 2 of 4) protein_coding-intron (ENSMUSG00000008496.19, intron 2 of 4) -9495 ENSMUSG00000008496.19 ENSMUSG00000008496 ENSMUST00000175754 Pou2f2 protein_coding Interval_44670 chr13 47036787 47037552 + 0 NA intron (ENSMUSG00000021376.11, intron 3 of 6) protein_coding-intron (ENSMUSG00000021376.11, intron 3 of 8) -6401 ENSMUSG00000038080.17 ENSMUSG00000038080 ENSMUST00000128977 Kdm1b protein_coding Interval_44235 chr13 42608485 42609387 + 0 NA Intergenic Intergenic -16058 ENSMUSG00000095255.2 ENSMUSG00000095255 ENSMUST00000116935 Gm23086 miRNA Interval_173765 chrX 103630539 103631046 + 0 NA exon (ENSMUSG00000031330.8, exon 1 of 1) protein_coding-exon (ENSMUSG00000031330.8, exon 1 of 1) 206 ENSMUSG00000031330.8 ENSMUSG00000031330 ENSMUST00000033692 Zcchc13 protein_coding Interval_106570 chr3 97337631 97337935 + 0 NA Intergenic Intergenic -39866 ENSMUSG00000038256.15 ENSMUSG00000038256 ENSMUST00000127319 Bcl9 protein_coding Interval_83224 chr18 82865583 82866034 + 0 NA intron (ENSMUSG00000097738.2, intron 1 of 1) lincRNA-intron (ENSMUSG00000097738.2, intron 1 of 1) 9914 ENSMUSG00000097738.2 ENSMUSG00000097738 ENSMUST00000180631 4930445N18Rik lincRNA Interval_142546 chr6 143184475 143185243 + 0 NA intron (ENSMUSG00000030275.6, intron 3 of 6) protein_coding-intron (ENSMUSG00000030275.6, intron 3 of 7) 17605 ENSMUSG00000030275.6 ENSMUSG00000030275 ENSMUST00000205256 Etnk1 protein_coding Interval_82915 chr18 79064157 79065241 + 0 NA intron (ENSMUSG00000024548.11, intron 2 of 5) protein_coding-intron (ENSMUSG00000024548.11, intron 2 of 5) 44692 ENSMUSG00000024548.11 ENSMUSG00000024548 ENSMUST00000025430 Setbp1 protein_coding Interval_116168 chr4 108337949 108340109 + 0 NA TTS (ENSMUSG00000048351.14) protein_coding-TTS (ENSMUSG00000048351.14) 10840 ENSMUSG00000048351.14 ENSMUSG00000048351 ENSMUST00000147054 Coa7 protein_coding Interval_37222 chr12 61311265 61311534 + 0 NA intron (ENSMUSG00000098029.2, intron 2 of 2) transcribed_processed_pseudogene-intron (ENSMUSG00000098029.2, intron 2 of 2) 42492 ENSMUSG00000098029.2 ENSMUSG00000098029 ENSMUST00000182235 Gm7745 transcribed_processed_pseudogene Interval_165564 chr9 49528742 49529956 + 0 NA intron (ENSMUSG00000039542.16, intron 13 of 17) antisense-intron (ENSMUSG00000079564.3, intron 2 of 3) 11061 ENSMUSG00000079564.3 ENSMUSG00000079564 ENSMUST00000215070 Gm11149 antisense Interval_122090 chr5 16804698 16804908 + 0 NA intron (ENSMUSG00000109903.1, intron 3 of 20) protein_coding-intron (ENSMUSG00000109903.1, intron 3 of 20) 12993 ENSMUSG00000109903.1 ENSMUSG00000109903 ENSMUST00000211738 Gm28710 protein_coding Interval_127748 chr5 107303441 107304149 + 0 NA TTS (ENSMUSG00000088429.1) snRNA-TTS (ENSMUSG00000088429.1) 849 ENSMUSG00000088429.1 ENSMUSG00000088429 ENSMUST00000157804 Gm22557 snRNA Interval_75794 chr17 71438720 71439562 + 0 NA intron (ENSMUSG00000024054.14, intron 10 of 47) protein_coding-intron (ENSMUSG00000024054.14, intron 10 of 47) 17594 ENSMUSG00000117103.1 ENSMUSG00000117103 ENSMUST00000232892 Gm49916 processed_pseudogene Interval_61993 chr15 85713962 85714347 + 0 NA Intergenic Intergenic 6835 ENSMUSG00000065564.1 ENSMUSG00000065564 ENSMUST00000083630 Mirlet7b miRNA Interval_11689 chr1 184707448 184707734 + 0 NA Intergenic Intergenic -4906 ENSMUSG00000092578.1 ENSMUSG00000092578 ENSMUST00000172500 4930488B22Rik lincRNA Interval_8793 chr1 151177018 151178895 + 0 NA Intergenic Intergenic -4581 ENSMUSG00000114212.1 ENSMUSG00000114212 ENSMUST00000225278 Gm47985 protein_coding Interval_50621 chr14 16741069 16741952 + 0 NA intron (ENSMUSG00000017491.9, intron 1 of 3) protein_coding-intron (ENSMUSG00000017491.9, intron 1 of 3) -165683 ENSMUSG00000017491.9 ENSMUSG00000017491 ENSMUST00000225245 Rarb protein_coding Interval_60887 chr15 77523292 77523867 + 0 NA Intergenic Intergenic 9737 ENSMUSG00000044309.8 ENSMUSG00000044309 ENSMUST00000230863 Apol7c protein_coding Interval_57758 chr15 19074505 19074694 + 0 NA Intergenic Intergenic -8030 ENSMUSG00000115815.1 ENSMUSG00000115815 ENSMUST00000226382 Gm8328 processed_pseudogene Interval_22813 chr11 16257231 16258200 + 0 NA promoter-TSS (ENSMUSG00000048834.16) protein_coding-promoter-TSS (ENSMUSG00000048834.16) -348 ENSMUSG00000048834.16 ENSMUSG00000048834 ENSMUST00000207256 Vstm2a protein_coding Interval_99941 chr2 166023860 166024393 + 0 NA intron (ENSMUSG00000027678.17, intron 1 of 22) protein_coding-intron (ENSMUSG00000027678.17, intron 1 of 22) -23792 ENSMUSG00000027678.17 ENSMUSG00000027678 ENSMUST00000139394 Ncoa3 protein_coding Interval_77517 chr17 90628367 90628649 + 0 NA intron (ENSMUSG00000024109.18, intron 1 of 3) protein_coding-intron (ENSMUSG00000024109.18, intron 8 of 20) -60751 ENSMUSG00000093716.1 ENSMUSG00000093716 ENSMUST00000175818 Gm19815 processed_pseudogene Interval_65797 chr16 28911986 28913030 + 0 NA intron (ENSMUSG00000051065.9, intron 1 of 1) protein_coding-intron (ENSMUSG00000051065.9, intron 1 of 1) 38847 ENSMUSG00000116861.1 ENSMUSG00000116861 ENSMUST00000232466 Gm8253 processed_pseudogene Interval_91150 chr2 35480791 35481730 + 0 NA Intergenic Intergenic 2645 ENSMUSG00000081841.1 ENSMUSG00000081841 ENSMUST00000119445 Gm13444 processed_pseudogene Interval_164584 chr9 39476611 39476986 + 0 NA Intergenic Intergenic -2160 ENSMUSG00000111687.1 ENSMUSG00000111687 ENSMUST00000216492 Olfr956-ps1 unprocessed_pseudogene Interval_141908 chr6 135273267 135273589 + 0 NA Intergenic Intergenic -15931 ENSMUSG00000108276.1 ENSMUSG00000108276 ENSMUST00000203686 Gm36640 antisense Interval_144665 chr7 27404133 27404935 + 0 NA exon (ENSMUSG00000011751.16, exon 16 of 36) protein_coding-exon (ENSMUSG00000011751.16, exon 16 of 36) -28602 ENSMUSG00000108416.1 ENSMUSG00000108416 ENSMUST00000138087 Gm44924 processed_transcript Interval_22643 chr11 12451374 12451803 + 0 NA intron (ENSMUSG00000020173.17, intron 1 of 11) protein_coding-intron (ENSMUSG00000020173.17, intron 1 of 14) -39444 ENSMUSG00000020173.17 ENSMUSG00000020173 ENSMUST00000146067 Cobl protein_coding Interval_27262 chr11 65088567 65089873 + 0 NA intron (ENSMUSG00000033389.16, intron 1 of 20) protein_coding-intron (ENSMUSG00000033389.16, intron 1 of 20) -21413 ENSMUSG00000076394.1 ENSMUSG00000076394 ENSMUST00000102439 Gm25991 miRNA Interval_154911 chr8 25008985 25009462 + 0 NA intron (ENSMUSG00000031555.15, intron 1 of 21) protein_coding-intron (ENSMUSG00000031555.15, intron 1 of 22) -8036 ENSMUSG00000031556.6 ENSMUSG00000031556 ENSMUST00000210536 Tm2d2 protein_coding Interval_8093 chr1 135696240 135696650 + 0 NA Intergenic Intergenic -23616 ENSMUSG00000026421.14 ENSMUSG00000026421 ENSMUST00000027677 Csrp1 protein_coding Interval_156162 chr8 45343296 45343745 + 0 NA intron (ENSMUSG00000070044.15, intron 10 of 13) protein_coding-intron (ENSMUSG00000070044.15, intron 10 of 13) -10304 ENSMUSG00000079057.4 ENSMUSG00000079057 ENSMUST00000095328 Cyp4v3 protein_coding Interval_156101 chr8 44577220 44577878 + 0 NA Intergenic Intergenic -24284 ENSMUSG00000088523.1 ENSMUSG00000088523 ENSMUST00000157898 Gm26089 rRNA Interval_66602 chr16 35570714 35571058 + 0 NA intron (ENSMUSG00000052133.16, intron 1 of 5) protein_coding-intron (ENSMUSG00000052133.16, intron 1 of 21) 2670 ENSMUSG00000052192.5 ENSMUSG00000052192 ENSMUST00000143451 Gm5963 processed_pseudogene Interval_149809 chr7 101724948 101725599 + 0 NA intron (ENSMUSG00000001829.17, intron 5 of 16) protein_coding-intron (ENSMUSG00000001829.17, intron 5 of 15) 61500 ENSMUSG00000001829.17 ENSMUSG00000001829 ENSMUST00000150832 Clpb protein_coding Interval_142349 chr6 140768181 140768438 + 0 NA Intergenic Intergenic 16395 ENSMUSG00000108039.1 ENSMUSG00000108039 ENSMUST00000203498 Gm43925 processed_pseudogene Interval_136760 chr6 59195771 59196748 + 0 NA Intergenic Intergenic -3006 ENSMUSG00000107987.1 ENSMUSG00000107987 ENSMUST00000204516 Gm43905 processed_pseudogene Interval_24424 chr11 33169866 33171115 + 0 NA Intergenic Intergenic -2429 ENSMUSG00000099902.1 ENSMUSG00000099902 ENSMUST00000119969 Gm12115 processed_pseudogene Interval_130045 chr5 123895386 123896446 + 0 NA Intergenic Intergenic -11359 ENSMUSG00000023106.15 ENSMUSG00000023106 ENSMUST00000166233 Denr protein_coding Interval_95378 chr2 107289966 107291315 + 0 NA promoter-TSS (ENSMUSG00000042604.5) protein_coding-promoter-TSS (ENSMUSG00000042604.5) -755 ENSMUSG00000042604.5 ENSMUSG00000042604 ENSMUST00000173191 Kcna4 protein_coding Interval_55853 chr14 101516284 101517563 + 0 NA intron (ENSMUSG00000033083.16, intron 1 of 20) protein_coding-intron (ENSMUSG00000033083.16, intron 1 of 13) 56091 ENSMUSG00000115319.1 ENSMUSG00000115319 ENSMUST00000228293 Gm34417 processed_pseudogene Interval_101538 chr3 4577541 4577812 + 0 NA Intergenic Intergenic -10341 ENSMUSG00000089287.1 ENSMUSG00000089287 ENSMUST00000158662 Gm22944 snoRNA Interval_42856 chr13 20449013 20449766 + 0 NA intron (ENSMUSG00000113313.1, intron 2 of 2) protein_coding-intron (ENSMUSG00000041112.17, intron 15 of 21) 24101 ENSMUSG00000113313.1 ENSMUSG00000113313 ENSMUST00000221484 Gm32036 antisense Interval_137269 chr6 70919847 70920133 + 0 NA Intergenic Intergenic -1063 ENSMUSG00000051896.4 ENSMUSG00000051896 ENSMUST00000063456 Tex37 protein_coding Interval_98231 chr2 150234408 150235136 + 0 NA intron (ENSMUSG00000060336.6, intron 1 of 3) protein_coding-intron (ENSMUSG00000060336.6, intron 1 of 3) 16699 ENSMUSG00000060336.6 ENSMUSG00000060336 ENSMUST00000073782 Zfp937 protein_coding Interval_24280 chr11 32063608 32063935 + 0 NA Intergenic Intergenic 37457 ENSMUSG00000086386.1 ENSMUSG00000086386 ENSMUST00000145338 Gm12108 lincRNA Interval_117948 chr4 127251735 127252767 + 0 NA Intergenic Intergenic 8467 ENSMUSG00000042380.8 ENSMUSG00000042380 ENSMUST00000142029 Smim12 protein_coding Interval_62832 chr15 97318723 97319123 + 0 NA intron (ENSMUSG00000044250.8, intron 3 of 5) protein_coding-intron (ENSMUSG00000044250.8, intron 3 of 5) -15949 ENSMUSG00000116291.1 ENSMUSG00000116291 ENSMUST00000229443 Gm4383 processed_pseudogene Interval_76166 chr17 75820856 75821584 + 0 NA Intergenic Intergenic -12617 ENSMUSG00000117587.1 ENSMUSG00000117587 ENSMUST00000235034 Gm50099 processed_pseudogene Interval_92246 chr2 57299370 57300719 + 0 NA intron (ENSMUSG00000026827.12, intron 3 of 16) protein_coding-intron (ENSMUSG00000026827.12, intron 3 of 16) -24358 ENSMUSG00000084292.1 ENSMUSG00000084292 ENSMUST00000118714 Gm13535 processed_pseudogene Interval_124544 chr5 50252606 50253190 + 0 NA TTS (ENSMUSG00000099124.1) miRNA-TTS (ENSMUSG00000099124.1) 136 ENSMUSG00000099124.1 ENSMUSG00000099124 ENSMUST00000184773 Mir8117 miRNA Interval_109565 chr3 144487272 144487493 + 0 NA intron (ENSMUSG00000040151.9, intron 1 of 6) protein_coding-intron (ENSMUSG00000040151.9, intron 1 of 6) 9790 ENSMUSG00000104903.1 ENSMUSG00000104903 ENSMUST00000196451 Gm43707 sense_intronic Interval_62615 chr15 95632751 95633195 + 0 NA promoter-TSS (ENSMUSG00000045608.7) protein_coding-promoter-TSS (ENSMUSG00000045608.7) -145 ENSMUSG00000045608.7 ENSMUSG00000045608 ENSMUST00000229611 Dbx2 protein_coding Interval_54274 chr14 67046925 67047671 + 0 NA intron (ENSMUSG00000022052.9, intron 2 of 9) protein_coding-intron (ENSMUSG00000022052.9, intron 2 of 9) -3769 ENSMUSG00000022052.9 ENSMUSG00000022052 ENSMUST00000225469 Ppp2r2a protein_coding Interval_68409 chr16 76111043 76112596 + 0 NA Intergenic Intergenic -10794 ENSMUSG00000116695.1 ENSMUSG00000116695 ENSMUST00000231285 4930578N18Rik lincRNA Interval_114144 chr4 64454311 64454613 + 0 NA Intergenic Intergenic 9732 ENSMUSG00000077214.1 ENSMUSG00000077214 ENSMUST00000104026 Gm23950 snoRNA Interval_137092 chr6 67292079 67296624 + 0 NA exon (ENSMUSG00000036371.6, exon 8 of 8) protein_coding-exon (ENSMUSG00000036371.6, exon 8 of 8) 27346 ENSMUSG00000036371.6 ENSMUSG00000036371 ENSMUST00000204206 Serbp1 protein_coding Interval_136938 chr6 64881290 64881724 + 0 NA Intergenic Intergenic -2379 ENSMUSG00000107424.1 ENSMUSG00000107424 ENSMUST00000204292 Gm18839 processed_pseudogene Interval_71172 chr17 20807696 20807884 + 0 NA Intergenic Intergenic -3828 ENSMUSG00000117148.1 ENSMUSG00000117148 ENSMUST00000076759 Vmn1r229 protein_coding Interval_126369 chr5 87384152 87384490 + 0 NA Intergenic Intergenic -4401 ENSMUSG00000106397.1 ENSMUSG00000106397 ENSMUST00000197078 Gm21049 unprocessed_pseudogene Interval_113031 chr4 47056458 47058010 + 0 NA promoter-TSS (ENSMUSG00000066191.12) protein_coding-promoter-TSS (ENSMUSG00000066191.12) 193 ENSMUSG00000066191.12 ENSMUSG00000066191 ENSMUST00000154664 Anks6 protein_coding Interval_104034 chr3 57562872 57563319 + 0 NA intron (ENSMUSG00000027803.14, intron 2 of 6) protein_coding-intron (ENSMUSG00000027803.14, intron 2 of 6) 12815 ENSMUSG00000027803.14 ENSMUSG00000027803 ENSMUST00000120977 Wwtr1 protein_coding Interval_162666 chr9 7659495 7660099 + 0 NA intron (ENSMUSG00000018620.3, intron 8 of 9) protein_coding-intron (ENSMUSG00000018620.3, intron 8 of 9) 30039 ENSMUSG00000110936.1 ENSMUSG00000110936 ENSMUST00000216642 Gm19212 processed_pseudogene Interval_21128 chr10 126763663 126765222 + 0 NA Intergenic Intergenic 29268 ENSMUSG00000112832.1 ENSMUSG00000112832 ENSMUST00000218870 4930484H19Rik lincRNA Interval_54019 chr14 64546470 64547234 + 0 NA Intergenic Intergenic -9314 ENSMUSG00000114680.1 ENSMUSG00000114680 ENSMUST00000223738 Gm47202 lincRNA Interval_56480 chr14 119040035 119040499 + 0 NA intron (ENSMUSG00000042104.18, intron 22 of 38) protein_coding-intron (ENSMUSG00000042104.18, intron 9 of 17) -4228 ENSMUSG00000042104.18 ENSMUSG00000042104 ENSMUST00000136924 Uggt2 protein_coding Interval_170363 chr9 107443759 107445706 + 0 NA intron (ENSMUSG00000091425.1, intron 1 of 1) protein_coding-intron (ENSMUSG00000010066.15, intron 2 of 37) 299 ENSMUSG00000091425.1 ENSMUSG00000091425 ENSMUST00000164032 Gm17118 antisense Interval_143053 chr6 148931259 148931714 + 0 NA intron (ENSMUSG00000039985.14, intron 3 of 6) protein_coding-intron (ENSMUSG00000039985.14, intron 2 of 5) -10951 ENSMUSG00000108258.1 ENSMUSG00000108258 ENSMUST00000203924 Gm43913 lincRNA Interval_73246 chr17 35752363 35753916 + 0 NA intron (ENSMUSG00000092600.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000092600.1, intron 1 of 1) 11052 ENSMUSG00000092600.1 ENSMUSG00000092600 ENSMUST00000174630 Gm20442 lincRNA Interval_46270 chr13 63272142 63274203 + 0 NA promoter-TSS (ENSMUSG00000114104.1) TEC-promoter-TSS (ENSMUSG00000114104.1) 356 ENSMUSG00000021458.17 ENSMUSG00000021458 ENSMUST00000221108 Aopep protein_coding Interval_34264 chr11 121808029 121809081 + 0 NA intron (ENSMUSG00000085126.1, intron 2 of 2) lincRNA-intron (ENSMUSG00000085126.1, intron 2 of 2) 5448 ENSMUSG00000085126.1 ENSMUSG00000085126 ENSMUST00000153767 Gm12589 lincRNA Interval_24974 chr11 42288108 42288365 + 0 NA Intergenic Intergenic 32815 ENSMUSG00000020428.13 ENSMUSG00000020428 ENSMUST00000109286 Gabra6 protein_coding Interval_118655 chr4 133021114 133022728 + 0 NA intron (ENSMUSG00000037692.14, intron 2 of 8) protein_coding-intron (ENSMUSG00000037692.14, intron 1 of 5) 10083 ENSMUSG00000037692.14 ENSMUSG00000037692 ENSMUST00000148518 Ahdc1 protein_coding Interval_106207 chr3 94610104 94610880 + 0 NA Intergenic Intergenic -5708 ENSMUSG00000062896.3 ENSMUSG00000062896 ENSMUST00000119898 Rpl31-ps11 processed_pseudogene Interval_44421 chr13 44755394 44755947 + 0 NA intron (ENSMUSG00000038518.15, intron 1 of 3) protein_coding-intron (ENSMUSG00000038518.15, intron 2 of 18) 24300 ENSMUSG00000038518.15 ENSMUSG00000038518 ENSMUST00000173003 Jarid2 protein_coding Interval_142298 chr6 140516366 140517406 + 0 NA intron (ENSMUSG00000030231.11, intron 1 of 10) protein_coding-intron (ENSMUSG00000030231.11, intron 3 of 30) -14077 ENSMUSG00000084477.1 ENSMUSG00000084477 ENSMUST00000122528 Gm25780 misc_RNA Interval_60645 chr15 75889119 75890646 + 0 NA Intergenic Intergenic -1112 ENSMUSG00000098678.1 ENSMUSG00000098678 ENSMUST00000184858 Mroh6 protein_coding Interval_11601 chr1 183214019 183214500 + 0 NA intron (ENSMUSG00000030768.12, intron 1 of 2) protein_coding-intron (ENSMUSG00000030768.12, intron 1 of 9) 7231 ENSMUSG00000030768.12 ENSMUSG00000030768 ENSMUST00000194033 Disp1 protein_coding Interval_29181 chr11 81179246 81179688 + 0 NA intron (ENSMUSG00000020704.13, intron 1 of 9) protein_coding-intron (ENSMUSG00000020704.13, intron 1 of 9) 107064 ENSMUSG00000085130.1 ENSMUSG00000085130 ENSMUST00000150536 Gm11417 antisense Interval_54142 chr14 65662081 65662602 + 0 NA Intergenic Intergenic -14136 ENSMUSG00000022032.14 ENSMUSG00000022032 ENSMUST00000154373 Scara5 protein_coding Interval_10650 chr1 172455319 172456241 + 0 NA Intergenic Intergenic -18254 ENSMUSG00000103357.1 ENSMUSG00000103357 ENSMUST00000194187 Gm7804 transcribed_processed_pseudogene Interval_91394 chr2 38529448 38530485 + 0 NA intron (ENSMUSG00000026749.11, intron 2 of 3) protein_coding-intron (ENSMUSG00000026749.11, intron 1 of 9) 5741 ENSMUSG00000108210.1 ENSMUSG00000108210 ENSMUST00000204769 Gm35808 TEC Interval_147083 chr7 62230524 62232229 + 0 NA Intergenic Intergenic -21897 ENSMUSG00000045813.7 ENSMUSG00000045813 ENSMUST00000054860 Gm9801 lincRNA Interval_163686 chr9 24341119 24341553 + 0 NA promoter-TSS (ENSMUSG00000074465.2) antisense-promoter-TSS (ENSMUSG00000074465.2) -321 ENSMUSG00000074465.2 ENSMUSG00000074465 ENSMUST00000098926 Gm10701 antisense Interval_79961 chr18 36286068 36287998 + 0 NA exon (ENSMUSG00000043991.5, exon 2 of 2) protein_coding-exon (ENSMUSG00000043991.5, exon 2 of 2) 5936 ENSMUSG00000043991.5 ENSMUSG00000043991 ENSMUST00000051301 Pura protein_coding Interval_90214 chr2 29065340 29067242 + 0 NA intron (ENSMUSG00000026803.17, intron 2 of 10) protein_coding-intron (ENSMUSG00000026803.17, intron 2 of 11) 6025 ENSMUSG00000026803.17 ENSMUSG00000026803 ENSMUST00000130506 Ttf1 protein_coding Interval_89139 chr2 17187972 17188277 + 0 NA Intergenic Intergenic -2637 ENSMUSG00000085193.1 ENSMUSG00000085193 ENSMUST00000152803 Gm13322 lincRNA Interval_65869 chr16 29936467 29936857 + 0 NA intron (ENSMUSG00000097313.2, intron 1 of 3) processed_transcript-intron (ENSMUSG00000097313.2, intron 1 of 3) 10092 ENSMUSG00000097313.2 ENSMUSG00000097313 ENSMUST00000232356 Gm26569 processed_transcript Interval_115530 chr4 100206437 100206875 + 0 NA intron (ENSMUSG00000035305.5, intron 1 of 8) protein_coding-intron (ENSMUSG00000035305.5, intron 1 of 8) 87035 ENSMUSG00000086385.1 ENSMUSG00000086385 ENSMUST00000134206 Gm12701 sense_intronic Interval_128908 chr5 116005640 116008226 + 0 NA TTS (ENSMUSG00000029516.19) protein_coding-TTS (ENSMUSG00000029516.19) -2383 ENSMUSG00000085376.1 ENSMUSG00000085376 ENSMUST00000127049 Gm14508 antisense Interval_168182 chr9 77806251 77807348 + 0 NA TTS (ENSMUSG00000111253.1) lincRNA-TTS (ENSMUSG00000111253.1) 2994 ENSMUSG00000111253.1 ENSMUSG00000111253 ENSMUST00000217012 Gm34654 lincRNA Interval_113450 chr4 55064101 55064544 + 0 NA intron (ENSMUSG00000060206.11, intron 10 of 12) protein_coding-intron (ENSMUSG00000060206.11, intron 8 of 10) -52241 ENSMUSG00000082704.1 ENSMUSG00000082704 ENSMUST00000120116 Gm12515 processed_pseudogene Interval_33057 chr11 113981750 113982798 + 0 NA intron (ENSMUSG00000041592.16, intron 1 of 11) protein_coding-intron (ENSMUSG00000041592.16, intron 1 of 44) -109132 ENSMUSG00000086760.1 ENSMUSG00000086760 ENSMUST00000129365 1700025D23Rik lincRNA Interval_49014 chr13 106916694 106917273 + 0 NA intron (ENSMUSG00000042590.17, intron 2 of 29) protein_coding-intron (ENSMUSG00000042590.17, intron 3 of 29) 28546 ENSMUSG00000114572.1 ENSMUSG00000114572 ENSMUST00000225875 Gm48457 processed_pseudogene Interval_167646 chr9 71491526 71494470 + 0 NA Intergenic Intergenic -7093 ENSMUSG00000032199.13 ENSMUSG00000032199 ENSMUST00000233263 Polr2m protein_coding Interval_13317 chr10 14703518 14704229 + 0 NA intron (ENSMUSG00000019868.16, intron 1 of 7) protein_coding-intron (ENSMUSG00000019868.16, intron 1 of 6) -1718 ENSMUSG00000019865.9 ENSMUSG00000019865 ENSMUST00000190751 Nmbr protein_coding Interval_49035 chr13 107111983 107112268 + 0 NA Intergenic Intergenic 48432 ENSMUSG00000114311.1 ENSMUSG00000114311 ENSMUST00000224729 Gm31452 lincRNA Interval_146452 chr7 46029862 46030366 + 0 NA intron (ENSMUSG00000030834.7, intron 1 of 30) protein_coding-intron (ENSMUSG00000030834.7, intron 1 of 30) -24046 ENSMUSG00000030835.6 ENSMUSG00000030835 ENSMUST00000182305 Nomo1 protein_coding Interval_14133 chr10 27972700 27973124 + 0 NA Intergenic Intergenic 36548 ENSMUSG00000064208.6 ENSMUSG00000064208 ENSMUST00000077776 Gm10145 processed_pseudogene Interval_42282 chr13 11737856 11738250 + 0 NA exon (ENSMUSG00000021313.16, exon 37 of 105) protein_coding-exon (ENSMUSG00000021313.16, exon 37 of 105) 83681 ENSMUSG00000113269.1 ENSMUSG00000113269 ENSMUST00000221204 Gm47494 TEC Interval_102849 chr3 32188167 32189626 + 0 NA intron (ENSMUSG00000037610.15, intron 5 of 5) protein_coding-intron (ENSMUSG00000037610.15, intron 4 of 4) 32782 ENSMUSG00000037610.15 ENSMUSG00000037610 ENSMUST00000194796 Kcnmb2 protein_coding Interval_56475 chr14 119005847 119008191 + 0 NA promoter-TSS (ENSMUSG00000042104.18) protein_coding-promoter-TSS (ENSMUSG00000042104.18) -23259 ENSMUSG00000115220.1 ENSMUSG00000115220 ENSMUST00000227218 Gm49768 lincRNA Interval_170433 chr9 107945862 107946245 + 0 NA TTS (ENSMUSG00000032936.13) protein_coding-TTS (ENSMUSG00000032936.13) 8753 ENSMUSG00000032936.13 ENSMUSG00000032936 ENSMUST00000194206 Camkv protein_coding Interval_126908 chr5 96997000 96998473 + 0 NA promoter-TSS (ENSMUSG00000034663.13) protein_coding-promoter-TSS (ENSMUSG00000034663.13) 47 ENSMUSG00000034663.13 ENSMUSG00000034663 ENSMUST00000035635 Bmp2k protein_coding Interval_162727 chr9 8078523 8078780 + 0 NA intron (ENSMUSG00000040729.8, intron 2 of 2) protein_coding-intron (ENSMUSG00000040729.8, intron 10 of 10) -35838 ENSMUSG00000053070.5 ENSMUSG00000053070 ENSMUST00000215478 Cfap300 protein_coding Interval_89512 chr2 21367199 21369369 + 0 NA exon (ENSMUSG00000045967.11, exon 1 of 11) protein_coding-exon (ENSMUSG00000045967.11, exon 1 of 11) 717 ENSMUSG00000045967.11 ENSMUSG00000045967 ENSMUST00000155760 Gpr158 protein_coding Interval_14227 chr10 29190583 29191337 + 0 NA intron (ENSMUSG00000038916.7, intron 4 of 4) protein_coding-intron (ENSMUSG00000038916.7, intron 5 of 6) -7994 ENSMUSG00000110723.1 ENSMUSG00000110723 ENSMUST00000217011 Gm49353 protein_coding Interval_3538 chr1 59439483 59439710 + 0 NA Intergenic Intergenic 9906 ENSMUSG00000104502.1 ENSMUSG00000104502 ENSMUST00000195013 Gm37737 TEC Interval_32281 chr11 106672989 106673639 + 0 NA intron (ENSMUSG00000020717.19, intron 12 of 14) protein_coding-intron (ENSMUSG00000020717.19, intron 14 of 15) -9988 ENSMUSG00000020717.19 ENSMUSG00000020717 ENSMUST00000124958 Pecam1 protein_coding Interval_21753 chr11 4131172 4131599 + 0 NA Intergenic Intergenic -1235 ENSMUSG00000083838.1 ENSMUSG00000083838 ENSMUST00000118304 Gm11957 processed_pseudogene Interval_155945 chr8 41209195 41209927 + 0 NA intron (ENSMUSG00000031594.9, intron 2 of 2) protein_coding-intron (ENSMUSG00000031594.9, intron 3 of 7) 5592 ENSMUSG00000031594.9 ENSMUSG00000031594 ENSMUST00000134510 Fgl1 protein_coding Interval_129364 chr5 119552463 119552977 + 0 NA Intergenic Intergenic -24766 ENSMUSG00000106938.1 ENSMUSG00000106938 ENSMUST00000201435 Gm31314 lincRNA Interval_41050 chr12 110818185 110818505 + 0 NA intron (ENSMUSG00000056458.16, intron 1 of 6) protein_coding-intron (ENSMUSG00000056458.16, intron 1 of 5) 22582 ENSMUSG00000056458.16 ENSMUSG00000056458 ENSMUST00000177224 Mok protein_coding Interval_92656 chr2 62055828 62056146 + 0 NA intron (ENSMUSG00000026904.17, intron 1 of 26) protein_coding-intron (ENSMUSG00000026904.17, intron 1 of 24) -85315 ENSMUSG00000083018.1 ENSMUSG00000083018 ENSMUST00000121668 Gm13555 processed_pseudogene Interval_147824 chr7 73836323 73836673 + 0 NA exon (ENSMUSG00000108448.2, exon 4 of 4) lincRNA-exon (ENSMUSG00000108448.2, exon 4 of 4) 16908 ENSMUSG00000105381.1 ENSMUSG00000105381 ENSMUST00000199151 Mir7234 miRNA Interval_36865 chr12 54807170 54808238 + 0 NA Intergenic Intergenic -12017 ENSMUSG00000005656.9 ENSMUSG00000005656 ENSMUST00000219865 Snx6 protein_coding Interval_114561 chr4 82486346 82486743 + 0 NA intron (ENSMUSG00000008575.17, intron 2 of 4) protein_coding-intron (ENSMUSG00000008575.17, intron 2 of 11) -21472 ENSMUSG00000087413.1 ENSMUSG00000087413 ENSMUST00000139835 Gm11266 antisense Interval_20355 chr10 117078199 117079057 + 0 NA intron (ENSMUSG00000020170.4, intron 7 of 9) protein_coding-intron (ENSMUSG00000020170.4, intron 7 of 9) -23727 ENSMUSG00000034024.8 ENSMUSG00000034024 ENSMUST00000218059 Cct2 protein_coding Interval_159417 chr8 94469668 94470311 + 0 NA promoter-TSS (ENSMUSG00000074151.13) protein_coding-promoter-TSS (ENSMUSG00000074151.13) -35057 ENSMUSG00000098511.1 ENSMUSG00000098511 ENSMUST00000184542 Mir7072 miRNA Interval_36425 chr12 44424997 44426074 + 0 NA intron (ENSMUSG00000020598.16, intron 2 of 24) protein_coding-intron (ENSMUSG00000020598.16, intron 2 of 30) 15745 ENSMUSG00000112448.1 ENSMUSG00000112448 ENSMUST00000218248 Gm48182 TEC Interval_92741 chr2 64965379 64965770 + 0 NA intron (ENSMUSG00000026888.14, intron 2 of 13) protein_coding-intron (ENSMUSG00000026888.14, intron 2 of 13) 10195 ENSMUSG00000026888.14 ENSMUSG00000026888 ENSMUST00000146807 Grb14 protein_coding Interval_51231 chr14 25392512 25393003 + 0 NA intron (ENSMUSG00000087535.2, intron 2 of 3) antisense-intron (ENSMUSG00000087535.2, intron 2 of 3) -13148 ENSMUSG00000097601.2 ENSMUSG00000097601 ENSMUST00000181582 Gm26660 lincRNA Interval_13603 chr10 20153003 20154267 + 0 NA intron (ENSMUSG00000019996.17, intron 1 of 6) protein_coding-intron (ENSMUSG00000019996.17, intron 1 of 17) -17353 ENSMUSG00000019996.17 ENSMUSG00000019996 ENSMUST00000216308 Map7 protein_coding Interval_1120 chr1 15840869 15841616 + 0 NA intron (ENSMUSG00000025925.14, intron 9 of 9) protein_coding-intron (ENSMUSG00000025925.14, intron 8 of 8) -12089 ENSMUSG00000104379.1 ENSMUSG00000104379 ENSMUST00000194867 Gm37509 TEC Interval_87041 chr19 45754988 45755238 + 0 NA intron (ENSMUSG00000025220.8, intron 7 of 8) protein_coding-intron (ENSMUSG00000025220.8, intron 14 of 15) -5564 ENSMUSG00000056209.7 ENSMUSG00000056209 ENSMUST00000144165 Npm3 protein_coding Interval_71087 chr17 17843596 17844410 + 0 NA TTS (ENSMUSG00000080316.11) protein_coding-TTS (ENSMUSG00000080316.11) 11202 ENSMUSG00000003665.7 ENSMUSG00000003665 ENSMUST00000232410 Has1 protein_coding Interval_54060 chr14 64865266 64866030 + 0 NA intron (ENSMUSG00000021972.14, intron 3 of 9) protein_coding-intron (ENSMUSG00000021972.14, intron 4 of 10) -26389 ENSMUSG00000102764.1 ENSMUSG00000102764 ENSMUST00000191712 Gm37183 TEC Interval_102810 chr3 31260573 31262153 + 0 NA intron (ENSMUSG00000069072.9, intron 1 of 7) protein_coding-intron (ENSMUSG00000069072.9, intron 1 of 7) -2969 ENSMUSG00000069072.9 ENSMUSG00000069072 ENSMUST00000108245 Slc7a14 protein_coding Interval_119707 chr4 139372869 139374573 + 0 NA intron (ENSMUSG00000078517.12, intron 21 of 23) protein_coding-intron (ENSMUSG00000078517.12, intron 20 of 22) -6938 ENSMUSG00000066036.14 ENSMUSG00000066036 ENSMUST00000135534 Ubr4 protein_coding Interval_71415 chr17 23616946 23617474 + 0 NA Intergenic Intergenic 3690 ENSMUSG00000117059.1 ENSMUSG00000117059 ENSMUST00000233762 Gm7912 processed_pseudogene Interval_117254 chr4 121026681 121026995 + 0 NA Intergenic Intergenic -12910 ENSMUSG00000028626.5 ENSMUSG00000028626 ENSMUST00000140119 Col9a2 protein_coding Interval_82946 chr18 79902084 79902398 + 0 NA Intergenic Intergenic -25659 ENSMUSG00000098165.1 ENSMUSG00000098165 ENSMUST00000183151 Gm26977 processed_pseudogene Interval_84877 chr19 18565938 18566597 + 0 NA intron (ENSMUSG00000024725.13, intron 9 of 10) protein_coding-intron (ENSMUSG00000024725.13, intron 9 of 10) -15188 ENSMUSG00000080783.1 ENSMUSG00000080783 ENSMUST00000117398 Gm8250 processed_pseudogene Interval_8580 chr1 143375578 143375774 + 0 NA Intergenic Intergenic -264988 ENSMUSG00000033849.3 ENSMUSG00000033849 ENSMUST00000038252 B3galt2 protein_coding Interval_130052 chr5 123939052 123939909 + 0 NA intron (ENSMUSG00000061882.12, intron 4 of 12) protein_coding-intron (ENSMUSG00000061882.12, intron 4 of 12) 12062 ENSMUSG00000105875.1 ENSMUSG00000105875 ENSMUST00000166129 Gm43518 protein_coding Interval_61824 chr15 84432845 84433113 + 0 NA intron (ENSMUSG00000062760.11, intron 1 of 4) protein_coding-intron (ENSMUSG00000062760.11, intron 1 of 4) 14118 ENSMUSG00000062760.11 ENSMUSG00000062760 ENSMUST00000186527 Shisal1 protein_coding Interval_46553 chr13 67080846 67082450 + 0 NA promoter-TSS (ENSMUSG00000058883.16) protein_coding-promoter-TSS (ENSMUSG00000058883.16) -103 ENSMUSG00000058883.16 ENSMUSG00000058883 ENSMUST00000109743 Zfp708 protein_coding Interval_67622 chr16 53291902 53292363 + 0 NA Intergenic Intergenic 112061 ENSMUSG00000064511.1 ENSMUSG00000064511 ENSMUST00000082577 Gm22459 snoRNA Interval_91989 chr2 52227211 52228500 + 0 NA intron (ENSMUSG00000026950.18, intron 80 of 164) protein_coding-intron (ENSMUSG00000026950.18, intron 80 of 156) -55222 ENSMUSG00000089609.1 ENSMUSG00000089609 ENSMUST00000158984 Gm22095 miRNA Interval_84474 chr19 11601619 11602338 + 0 NA intron (ENSMUSG00000024679.10, intron 2 of 6) protein_coding-intron (ENSMUSG00000024679.10, intron 2 of 6) 5460 ENSMUSG00000088598.1 ENSMUSG00000088598 ENSMUST00000157973 Gm24599 snoRNA Interval_155513 chr8 34050861 34051529 + 0 NA intron (ENSMUSG00000054618.8, intron 1 of 1) lincRNA-intron (ENSMUSG00000054618.8, intron 1 of 1) -3427 ENSMUSG00000054618.8 ENSMUSG00000054618 ENSMUST00000149618 Gm9951 lincRNA Interval_6438 chr1 108662712 108663007 + 0 NA Intergenic Intergenic -50345 ENSMUSG00000101231.1 ENSMUSG00000101231 ENSMUST00000185509 Gm28283 processed_pseudogene Interval_21971 chr11 5484622 5485967 + 0 NA Intergenic Intergenic 10152 ENSMUSG00000085232.3 ENSMUSG00000085232 ENSMUST00000145746 Gm11962 processed_pseudogene Interval_76007 chr17 74318445 74319024 + 0 NA intron (ENSMUSG00000024067.14, intron 1 of 4) protein_coding-intron (ENSMUSG00000024067.14, intron 1 of 4) -2271 ENSMUSG00000024067.14 ENSMUSG00000024067 ENSMUST00000233059 Dpy30 protein_coding Interval_90614 chr2 31482807 31485008 + 0 NA intron (ENSMUSG00000076441.9, intron 5 of 15) protein_coding-intron (ENSMUSG00000076441.9, intron 5 of 15) -16819 ENSMUSG00000076441.9 ENSMUSG00000076441 ENSMUST00000130195 Ass1 protein_coding Interval_33223 chr11 115322025 115323686 + 0 NA promoter-TSS (ENSMUSG00000045288.10) protein_coding-promoter-TSS (ENSMUSG00000045288.10) 325 ENSMUSG00000050201.9 ENSMUSG00000050201 ENSMUST00000106544 Otop2 protein_coding Interval_159207 chr8 91668284 91669312 + 0 NA TTS (ENSMUSG00000055932.15) protein_coding-TTS (ENSMUSG00000055932.15) 3099 ENSMUSG00000110302.1 ENSMUSG00000110302 ENSMUST00000210393 Gm45295 TEC Interval_13254 chr10 13638356 13638619 + 0 NA Intergenic Intergenic 11289 ENSMUSG00000112055.1 ENSMUSG00000112055 ENSMUST00000219684 Gm48773 lincRNA Interval_77772 chr18 3387464 3388683 + 0 NA intron (ENSMUSG00000024231.15, intron 1 of 8) protein_coding-intron (ENSMUSG00000024231.15, intron 1 of 19) 4841 ENSMUSG00000024231.15 ENSMUSG00000024231 ENSMUST00000159443 Cul2 protein_coding Interval_93366 chr2 72441357 72441978 + 0 NA exon (ENSMUSG00000004085.14, exon 20 of 20) protein_coding-exon (ENSMUSG00000004085.14, exon 20 of 20) -34586 ENSMUSG00000055612.15 ENSMUSG00000055612 ENSMUST00000137880 Cdca7 protein_coding Interval_96074 chr2 119612511 119612689 + 0 NA intron (ENSMUSG00000072980.3, intron 4 of 5) protein_coding-intron (ENSMUSG00000072980.3, intron 3 of 4) 5869 ENSMUSG00000072980.3 ENSMUSG00000072980 ENSMUST00000123818 Oip5 protein_coding Interval_37459 chr12 69129802 69131176 + 0 NA intron (ENSMUSG00000113158.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000113158.1, intron 1 of 2) 653 ENSMUSG00000113158.1 ENSMUSG00000113158 ENSMUST00000222345 Gm31447 lincRNA Interval_151479 chr7 122959874 122960586 + 0 NA Intergenic Intergenic 9820 ENSMUSG00000108452.1 ENSMUSG00000108452 ENSMUST00000205998 4930413G21Rik TEC Interval_130559 chr5 128808654 128810488 + 0 NA intron (ENSMUSG00000029420.14, intron 4 of 20) protein_coding-intron (ENSMUSG00000029420.14, intron 6 of 21) -34021 ENSMUSG00000106522.1 ENSMUSG00000106522 ENSMUST00000199333 Gm42871 sense_intronic Interval_3226 chr1 55008274 55008989 + 0 NA intron (ENSMUSG00000025982.13, intron 3 of 3) protein_coding-intron (ENSMUSG00000025982.13, intron 6 of 24) 18763 ENSMUSG00000025982.13 ENSMUSG00000025982 ENSMUST00000188419 Sf3b1 protein_coding Interval_60175 chr15 66984681 66985215 + 0 NA intron (ENSMUSG00000091412.1, intron 1 of 1) bidirectional_promoter_lncRNA-intron (ENSMUSG00000091412.1, intron 1 of 1) -15332 ENSMUSG00000005125.13 ENSMUSG00000005125 ENSMUST00000164070 Ndrg1 protein_coding Interval_100819 chr2 172709177 172709841 + 0 NA Intergenic Intergenic 154832 ENSMUSG00000093160.1 ENSMUSG00000093160 ENSMUST00000175419 Gm22773 miRNA Interval_81637 chr18 62708245 62709426 + 0 NA intron (ENSMUSG00000073551.5, intron 1 of 4) protein_coding-intron (ENSMUSG00000073551.5, intron 1 of 4) 37574 ENSMUSG00000117712.1 ENSMUSG00000117712 ENSMUST00000236939 Gm19159 processed_pseudogene Interval_153932 chr8 11307925 11308568 + 0 NA intron (ENSMUSG00000031502.11, intron 1 of 52) protein_coding-intron (ENSMUSG00000031502.11, intron 1 of 51) 4443 ENSMUSG00000031502.11 ENSMUSG00000031502 ENSMUST00000209000 Col4a1 protein_coding Interval_106426 chr3 96141118 96141748 + 0 NA TTS (ENSMUSG00000038495.14) protein_coding-TTS (ENSMUSG00000038495.14) -29153 ENSMUSG00000045934.15 ENSMUSG00000045934 ENSMUST00000196004 Mtmr11 protein_coding Interval_85046 chr19 21784364 21785479 + 0 NA intron (ENSMUSG00000024754.13, intron 2 of 4) protein_coding-intron (ENSMUSG00000024754.13, intron 1 of 23) 6533 ENSMUSG00000024754.13 ENSMUSG00000024754 ENSMUST00000238079 Cemip2 protein_coding Interval_157845 chr8 74901676 74901932 + 0 NA Intergenic Intergenic 28264 ENSMUSG00000031621.9 ENSMUSG00000031621 ENSMUST00000174427 Isx protein_coding Interval_61046 chr15 78941632 78941972 + 0 NA TTS (ENSMUSG00000033099.10) protein_coding-TTS (ENSMUSG00000033099.10) -6117 ENSMUSG00000033088.19 ENSMUSG00000033088 ENSMUST00000129922 Triobp protein_coding Interval_76433 chr17 80174607 80175574 + 0 NA intron (ENSMUSG00000035473.10, intron 2 of 3) protein_coding-intron (ENSMUSG00000035473.10, intron 4 of 6) 21314 ENSMUSG00000088453.1 ENSMUSG00000088453 ENSMUST00000157828 Gm25706 misc_RNA Interval_13098 chr10 11324325 11324610 + 0 NA Intergenic Intergenic 5948 ENSMUSG00000111983.1 ENSMUSG00000111983 ENSMUST00000219929 Gm48666 processed_pseudogene Interval_106627 chr3 97900738 97901621 + 0 NA promoter-TSS (ENSMUSG00000027879.9) protein_coding-promoter-TSS (ENSMUSG00000027879.9) -90 ENSMUSG00000086557.1 ENSMUSG00000086557 ENSMUST00000127317 Gm15999 lincRNA Interval_161849 chr8 123185515 123186268 + 0 NA promoter-TSS (ENSMUSG00000019278.5) protein_coding-promoter-TSS (ENSMUSG00000019278.5) -7603 ENSMUSG00000019278.5 ENSMUSG00000019278 ENSMUST00000212409 Dpep1 protein_coding Interval_113923 chr4 59873554 59874412 + 0 NA intron (ENSMUSG00000028385.14, intron 3 of 8) protein_coding-intron (ENSMUSG00000028385.14, intron 3 of 8) -10711 ENSMUSG00000028385.14 ENSMUSG00000028385 ENSMUST00000143185 Snx30 protein_coding Interval_97757 chr2 143867176 143867897 + 0 NA Intergenic Intergenic -4593 ENSMUSG00000027420.13 ENSMUSG00000027420 ENSMUST00000028907 Bfsp1 protein_coding Interval_34370 chr12 3662224 3663375 + 0 NA exon (ENSMUSG00000071454.13, exon 9 of 9) protein_coding-exon (ENSMUSG00000071454.13, exon 9 of 9) -36379 ENSMUSG00000077830.1 ENSMUSG00000077830 ENSMUST00000104640 Gm26050 miRNA Interval_146954 chr7 56217022 56218006 + 0 NA promoter-TSS (ENSMUSG00000108347.1) processed_pseudogene-promoter-TSS (ENSMUSG00000108347.1) -261 ENSMUSG00000108347.1 ENSMUSG00000108347 ENSMUST00000206781 Gm19187 processed_pseudogene Interval_174404 chrX 151343603 151346105 + 0 NA promoter-TSS (ENSMUSG00000084771.8) antisense-promoter-TSS (ENSMUSG00000084771.8) 679 ENSMUSG00000025262.8 ENSMUSG00000025262 ENSMUST00000125924 Fam120c protein_coding Interval_79022 chr18 24003839 24004922 + 0 NA exon (ENSMUSG00000063281.9, exon 3 of 3) protein_coding-exon (ENSMUSG00000063281.9, exon 3 of 3) 14748 ENSMUSG00000063281.9 ENSMUSG00000063281 ENSMUST00000074941 Zfp35 protein_coding Interval_78267 chr18 11051707 11055390 + 0 NA promoter-TSS (ENSMUSG00000097222.2) processed_transcript-promoter-TSS (ENSMUSG00000097222.2) 504 ENSMUSG00000005836.10 ENSMUSG00000005836 ENSMUST00000234971 Gata6 protein_coding Interval_53652 chr14 60622221 60624188 + 0 NA Intergenic Intergenic -26302 ENSMUSG00000114408.1 ENSMUSG00000114408 ENSMUST00000224210 Gm47810 processed_pseudogene Interval_172482 chrX 20978588 20979506 + 0 NA intron (ENSMUSG00000086877.7, intron 2 of 3) processed_transcript-intron (ENSMUSG00000086877.7, intron 4 of 5) 16933 ENSMUSG00000086877.7 ENSMUSG00000086877 ENSMUST00000136447 A230072C01Rik processed_transcript Interval_21033 chr10 124238001 124238245 + 0 NA Intergenic Intergenic 19261 ENSMUSG00000112250.1 ENSMUSG00000112250 ENSMUST00000220441 Gm47837 processed_pseudogene Interval_31542 chr11 101265095 101265441 + 0 NA promoter-TSS (ENSMUSG00000035112.17) protein_coding-promoter-TSS (ENSMUSG00000035112.17) 1035 ENSMUSG00000085083.1 ENSMUSG00000085083 ENSMUST00000156205 Gm11615 antisense Interval_124869 chr5 57757215 57757653 + 0 NA intron (ENSMUSG00000029108.14, intron 1 of 1) protein_coding-intron (ENSMUSG00000029108.14, intron 1 of 2) -21439 ENSMUSG00000104821.1 ENSMUSG00000104821 ENSMUST00000196822 Gm42481 TEC Interval_71893 chr17 26841060 26841692 + 0 NA exon (ENSMUSG00000015579.5, exon 1 of 2) protein_coding-exon (ENSMUSG00000015579.5, exon 1 of 2) 3633 ENSMUSG00000015579.5 ENSMUSG00000015579 ENSMUST00000235454 Nkx2-5 protein_coding Interval_6945 chr1 121177180 121178251 + 0 NA intron (ENSMUSG00000097881.7, intron 2 of 2) lincRNA-intron (ENSMUSG00000097881.7, intron 2 of 2) -46561 ENSMUSG00000101700.1 ENSMUSG00000101700 ENSMUST00000191007 Gm29359 lincRNA Interval_138928 chr6 93598476 93599025 + 0 NA Intergenic Intergenic 51475 ENSMUSG00000107739.1 ENSMUSG00000107739 ENSMUST00000203479 Gm7812 processed_pseudogene Interval_110843 chr4 8910865 8912259 + 0 NA Intergenic Intergenic -29697 ENSMUSG00000083786.1 ENSMUSG00000083786 ENSMUST00000119493 Rps18-ps2 processed_pseudogene Interval_121205 chr4 154038672 154038887 + 0 NA intron (ENSMUSG00000039492.7, intron 4 of 11) protein_coding-intron (ENSMUSG00000039492.7, intron 4 of 11) 3898 ENSMUSG00000039492.7 ENSMUSG00000039492 ENSMUST00000047207 Ccdc27 protein_coding Interval_28866 chr11 78856187 78858349 + 0 NA Intergenic Intergenic 30684 ENSMUSG00000072640.11 ENSMUSG00000072640 ENSMUST00000100748 Lyrm9 protein_coding Interval_87468 chr19 52623486 52623760 + 0 NA Intergenic Intergenic 286458 ENSMUSG00000118114.1 ENSMUSG00000118114 ENSMUST00000236031 Gm50332 lincRNA Interval_159907 chr8 105102242 105103303 + 0 NA Intergenic Intergenic -7852 ENSMUSG00000110502.1 ENSMUSG00000110502 ENSMUST00000212292 Gm8804 processed_pseudogene Interval_97569 chr2 139964747 139965132 + 0 NA intron (ENSMUSG00000039033.11, intron 8 of 13) protein_coding-intron (ENSMUSG00000039033.11, intron 8 of 13) 77275 ENSMUSG00000039033.11 ENSMUSG00000039033 ENSMUST00000124949 Tasp1 protein_coding Interval_31649 chr11 101983098 101983445 + 0 NA intron (ENSMUSG00000003518.13, intron 1 of 2) protein_coding-intron (ENSMUSG00000003518.13, intron 1 of 2) -1008 ENSMUSG00000010841.13 ENSMUSG00000010841 ENSMUST00000010985 Cfap97d1 protein_coding Interval_144200 chr7 19920259 19921460 + 0 NA exon (ENSMUSG00000090075.1, exon 1 of 2) antisense-exon (ENSMUSG00000090075.1, exon 1 of 2) 130 ENSMUSG00000090075.1 ENSMUSG00000090075 ENSMUST00000162649 Gm16251 antisense Interval_172345 chrX 13275472 13276090 + 0 NA Intergenic Intergenic -5241 ENSMUSG00000000787.12 ENSMUSG00000000787 ENSMUST00000149639 Ddx3x protein_coding Interval_20716 chr10 120474585 120477407 + 0 NA exon (ENSMUSG00000056758.14, exon 1 of 5) protein_coding-exon (ENSMUSG00000056758.14, exon 1 of 5) 473 ENSMUSG00000056758.14 ENSMUSG00000056758 ENSMUST00000159310 Hmga2 protein_coding Interval_134910 chr6 33486621 33487054 + 0 NA intron (ENSMUSG00000029763.17, intron 9 of 12) protein_coding-intron (ENSMUSG00000029763.17, intron 9 of 17) 53829 ENSMUSG00000107358.1 ENSMUSG00000107358 ENSMUST00000201039 Gm43168 TEC Interval_86359 chr19 38966527 38967077 + 0 NA intron (ENSMUSG00000025001.11, intron 21 of 21) protein_coding-intron (ENSMUSG00000025001.11, intron 21 of 21) -9845 ENSMUSG00000114610.1 ENSMUSG00000114610 ENSMUST00000225458 Cyp2c52-ps unprocessed_pseudogene Interval_39592 chr12 91294453 91294799 + 0 NA intron (ENSMUSG00000061533.16, intron 12 of 25) protein_coding-intron (ENSMUSG00000061533.16, intron 12 of 13) -29043 ENSMUSG00000113239.1 ENSMUSG00000113239 ENSMUST00000222339 Gm18388 processed_pseudogene Interval_16379 chr10 62595885 62596934 + 0 NA intron (ENSMUSG00000020075.8, intron 2 of 14) protein_coding-intron (ENSMUSG00000020075.8, intron 2 of 14) -5438 ENSMUSG00000020075.8 ENSMUSG00000020075 ENSMUST00000220060 Ddx21 protein_coding Interval_56597 chr14 120699421 120699735 + 0 NA Intergenic Intergenic -13500 ENSMUSG00000115630.1 ENSMUSG00000115630 ENSMUST00000226406 Rpl19-ps5 processed_pseudogene Interval_158650 chr8 84955852 84957199 + 0 NA TTS (ENSMUSG00000048617.16) protein_coding-TTS (ENSMUSG00000048617.16) 5344 ENSMUSG00000048617.16 ENSMUSG00000048617 ENSMUST00000152378 Rtbdn protein_coding Interval_8468 chr1 139669533 139670370 + 0 NA Intergenic Intergenic -1653 ENSMUSG00000096117.1 ENSMUSG00000096117 ENSMUST00000158349 Gm26271 snRNA Interval_55786 chr14 100109436 100110003 + 0 NA intron (ENSMUSG00000072294.5, intron 3 of 7) protein_coding-intron (ENSMUSG00000072294.5, intron 2 of 6) -103470 ENSMUSG00000054391.12 ENSMUSG00000054391 ENSMUST00000145018 4930517O19Rik antisense Interval_89694 chr2 24697495 24697704 + 0 NA exon (ENSMUSG00000004113.18, exon 14 of 47) protein_coding-exon (ENSMUSG00000004113.18, exon 14 of 47) 22898 ENSMUSG00000083973.1 ENSMUSG00000083973 ENSMUST00000121558 Gm13459 processed_pseudogene Interval_19343 chr10 97313051 97313913 + 0 NA Intergenic Intergenic 71570 ENSMUSG00000111981.1 ENSMUSG00000111981 ENSMUST00000219755 Gm18515 processed_pseudogene Interval_48910 chr13 104660128 104661481 + 0 NA intron (ENSMUSG00000021715.12, intron 12 of 13) protein_coding-intron (ENSMUSG00000021715.12, intron 12 of 13) -24127 ENSMUSG00000084860.1 ENSMUSG00000084860 ENSMUST00000131215 2610204G07Rik antisense Interval_112684 chr4 44049457 44050597 + 0 NA intron (ENSMUSG00000028479.18, intron 2 of 8) protein_coding-intron (ENSMUSG00000028479.18, intron 5 of 11) 5270 ENSMUSG00000028479.18 ENSMUSG00000028479 ENSMUST00000140724 Gne protein_coding Interval_270 KZ289068.1 451236 453098 + 0 NA NA NA NA NA Interval_10863 chr1 176249767 176250010 + 0 NA intron (ENSMUSG00000055214.15, intron 1 of 5) protein_coding-intron (ENSMUSG00000055214.15, intron 1 of 9) -26325 ENSMUSG00000104157.1 ENSMUSG00000104157 ENSMUST00000193484 Gm38101 lincRNA Interval_105185 chr3 83582681 83583413 + 0 NA Intergenic Intergenic -8925 ENSMUSG00000101334.1 ENSMUSG00000101334 ENSMUST00000185938 1700028M03Rik lincRNA Interval_47092 chr13 75643695 75644564 + 0 NA promoter-TSS (ENSMUSG00000074800.4) processed_pseudogene-promoter-TSS (ENSMUSG00000074800.4) -767 ENSMUSG00000074800.4 ENSMUSG00000074800 ENSMUST00000099371 Gm4149 processed_pseudogene Interval_128121 chr5 111123277 111123826 + 0 NA intron (ENSMUSG00000033209.17, intron 5 of 22) protein_coding-intron (ENSMUSG00000033209.17, intron 5 of 23) -34760 ENSMUSG00000106153.1 ENSMUSG00000106153 ENSMUST00000198098 Gm43677 TEC Interval_159120 chr8 90827873 90829462 + 0 NA promoter-TSS (ENSMUSG00000056608.14) protein_coding-promoter-TSS (ENSMUSG00000056608.14) -11274 ENSMUSG00000110332.1 ENSMUSG00000110332 ENSMUST00000209208 Gm19935 protein_coding Interval_165081 chr9 44450558 44450824 + 0 NA Intergenic Intergenic 4285 ENSMUSG00000041523.3 ENSMUSG00000041523 ENSMUST00000047740 Upk2 protein_coding Interval_54238 chr14 66783556 66785584 + 0 NA promoter-TSS (ENSMUSG00000057913.3) lincRNA-promoter-TSS (ENSMUSG00000057913.3) 62 ENSMUSG00000057913.3 ENSMUSG00000057913 ENSMUST00000225384 Gm10032 lincRNA Interval_155839 chr8 40063685 40065401 + 0 NA Intergenic Intergenic 47829 ENSMUSG00000109815.1 ENSMUSG00000109815 ENSMUST00000209880 Gm7082 processed_pseudogene Interval_112288 chr4 40106033 40106640 + 0 NA Intergenic Intergenic 10897 ENSMUSG00000081352.1 ENSMUSG00000081352 ENSMUST00000117696 Gm12389 processed_pseudogene Interval_57577 chr15 12503583 12504488 + 0 NA intron (ENSMUSG00000022197.16, intron 3 of 4) protein_coding-intron (ENSMUSG00000022197.16, intron 1 of 23) 68495 ENSMUSG00000095516.1 ENSMUSG00000095516 ENSMUST00000179085 Gm24135 miRNA Interval_124961 chr5 62278649 62279017 + 0 NA Intergenic Intergenic -146349 ENSMUSG00000077228.1 ENSMUSG00000077228 ENSMUST00000104040 Gm22273 snoRNA Interval_156113 chr8 44915622 44915901 + 0 NA Intergenic Intergenic 19398 ENSMUSG00000110409.1 ENSMUSG00000110409 ENSMUST00000211534 Gm9908 bidirectional_promoter_lncRNA Interval_18684 chr10 89278947 89279650 + 0 NA intron (ENSMUSG00000035189.17, intron 3 of 6) protein_coding-intron (ENSMUSG00000035189.17, intron 3 of 10) -21708 ENSMUSG00000035189.17 ENSMUSG00000035189 ENSMUST00000180843 Ano4 protein_coding Interval_113310 chr4 53376511 53377182 + 0 NA Intergenic Intergenic 27184 ENSMUSG00000086267.1 ENSMUSG00000086267 ENSMUST00000154377 Gm12496 lincRNA Interval_135675 chr6 43167360 43167796 + 0 NA exon (ENSMUSG00000071481.4, exon 1 of 1) protein_coding-exon (ENSMUSG00000071481.4, exon 1 of 1) 4296 ENSMUSG00000071481.4 ENSMUSG00000071481 ENSMUST00000060243 Olfr437 protein_coding Interval_163137 chr9 15587776 15588165 + 0 NA intron (ENSMUSG00000039977.16, intron 9 of 9) protein_coding-intron (ENSMUSG00000039977.16, intron 9 of 13) -31887 ENSMUSG00000111299.1 ENSMUSG00000111299 ENSMUST00000216952 4930540M03Rik antisense Interval_158527 chr8 84256042 84257667 + 0 NA promoter-TSS (ENSMUSG00000004996.9) protein_coding-promoter-TSS (ENSMUSG00000004996.9) 472 ENSMUSG00000004996.9 ENSMUSG00000004996 ENSMUST00000127747 Mri1 protein_coding Interval_2807 chr1 45632324 45632612 + 0 NA Intergenic Intergenic 30442 ENSMUSG00000100894.1 ENSMUSG00000100894 ENSMUST00000185744 Gm8304 processed_pseudogene Interval_36246 chr12 40252078 40252450 + 0 NA Intergenic Intergenic -26482 ENSMUSG00000113181.1 ENSMUSG00000113181 ENSMUST00000222014 Gm47954 processed_pseudogene Interval_2585 chr1 40866854 40867022 + 0 NA Intergenic Intergenic -2706 ENSMUSG00000094136.2 ENSMUSG00000094136 ENSMUST00000178542 Gm5973 processed_pseudogene Interval_65007 chr16 17815145 17816299 + 0 NA exon (ENSMUSG00000116777.1, exon 1 of 1) processed_pseudogene-exon (ENSMUSG00000116777.1, exon 1 of 1) 599 ENSMUSG00000116777.1 ENSMUSG00000116777 ENSMUST00000232392 Zfp520-ps processed_pseudogene Interval_2821 chr1 45860250 45861325 + 0 NA Intergenic Intergenic -3033 ENSMUSG00000084817.3 ENSMUSG00000084817 ENSMUST00000153604 Gm5526 processed_pseudogene Interval_91888 chr2 51038178 51039360 + 0 NA Intergenic Intergenic 110341 ENSMUSG00000017144.8 ENSMUSG00000017144 ENSMUST00000140864 Rnd3 protein_coding Interval_1768 chr1 33650290 33651267 + 0 NA intron (ENSMUSG00000026134.11, intron 5 of 13) protein_coding-intron (ENSMUSG00000026134.11, intron 5 of 13) -7003 ENSMUSG00000102093.1 ENSMUSG00000102093 ENSMUST00000185377 Gm17813 processed_pseudogene Interval_172106 chrX 7638199 7639006 + 0 NA promoter-TSS (ENSMUSG00000031144.15) protein_coding-promoter-TSS (ENSMUSG00000031144.15) -703 ENSMUSG00000031144.15 ENSMUSG00000031144 ENSMUST00000134355 Syp protein_coding Interval_137678 chr6 78976794 78977069 + 0 NA Intergenic Intergenic -55113 ENSMUSG00000108072.1 ENSMUSG00000108072 ENSMUST00000204808 Gm20362 lincRNA Interval_61344 chr15 80963406 80963677 + 0 NA promoter-TSS (ENSMUSG00000022407.10) protein_coding-promoter-TSS (ENSMUSG00000022407.10) 11036 ENSMUSG00000058357.2 ENSMUSG00000058357 ENSMUST00000170777 Gm6612 processed_pseudogene Interval_69055 chr16 90335372 90336095 + 0 NA Intergenic Intergenic -13684 ENSMUSG00000116989.1 ENSMUSG00000116989 ENSMUST00000231361 Gm49709 lincRNA Interval_44030 chr13 40010361 40011776 + 0 NA intron (ENSMUSG00000047094.9, intron 16 of 17) protein_coding-intron (ENSMUSG00000047094.9, intron 17 of 18) -126687 ENSMUSG00000114957.1 ENSMUSG00000114957 ENSMUST00000224937 Gm47316 lincRNA Interval_31138 chr11 98381514 98381830 + 0 NA TTS (ENSMUSG00000018167.10) protein_coding-TTS (ENSMUSG00000018167.10) -2139 ENSMUSG00000007877.2 ENSMUSG00000007877 ENSMUST00000008021 Tcap protein_coding Interval_81946 chr18 66208702 66209048 + 0 NA intron (ENSMUSG00000117764.1, intron 1 of 1) protein_coding-intron (ENSMUSG00000046318.16, intron 2 of 11) 9413 ENSMUSG00000117764.1 ENSMUSG00000117764 ENSMUST00000236179 Gm50143 sense_intronic Interval_126361 chr5 87130980 87131555 + 0 NA intron (ENSMUSG00000054630.7, intron 3 of 5) protein_coding-intron (ENSMUSG00000054630.7, intron 3 of 5) 9051 ENSMUSG00000054630.7 ENSMUSG00000054630 ENSMUST00000067790 Ugt2b5 protein_coding Interval_76411 chr17 80004024 80005112 + 0 NA Intergenic Intergenic -22906 ENSMUSG00000117415.1 ENSMUSG00000117415 ENSMUST00000234800 Gm41625 lincRNA Interval_117253 chr4 121023420 121023622 + 0 NA Intergenic Intergenic -16227 ENSMUSG00000028626.5 ENSMUSG00000028626 ENSMUST00000140119 Col9a2 protein_coding Interval_166016 chr9 55493927 55494923 + 0 NA intron (ENSMUSG00000032314.14, intron 5 of 7) protein_coding-intron (ENSMUSG00000032314.14, intron 4 of 11) 17695 ENSMUSG00000032314.14 ENSMUSG00000032314 ENSMUST00000142587 Etfa protein_coding Interval_67780 chr16 57145065 57146288 + 0 NA intron (ENSMUSG00000022752.9, intron 8 of 11) protein_coding-intron (ENSMUSG00000022752.9, intron 8 of 11) -7584 ENSMUSG00000022752.9 ENSMUSG00000022752 ENSMUST00000231901 Tomm70a protein_coding Interval_119014 chr4 135018195 135018516 + 0 NA Intergenic Intergenic 87453 ENSMUSG00000028821.8 ENSMUSG00000028821 ENSMUST00000144037 Syf2 protein_coding Interval_162375 chr8 127552080 127552690 + 0 NA intron (ENSMUSG00000025812.18, intron 22 of 24) protein_coding-intron (ENSMUSG00000025812.18, intron 21 of 23) -9050 ENSMUSG00000090074.1 ENSMUSG00000090074 ENSMUST00000161478 Gm6921 processed_pseudogene Interval_13655 chr10 20520717 20521393 + 0 NA intron (ENSMUSG00000019990.15, intron 2 of 2) protein_coding-intron (ENSMUSG00000019990.15, intron 2 of 12) -1287 ENSMUSG00000092051.2 ENSMUSG00000092051 ENSMUST00000166792 Gm17229 transcribed_processed_pseudogene Interval_117307 chr4 122885194 122886809 + 0 NA promoter-TSS (ENSMUSG00000028656.14) protein_coding-promoter-TSS (ENSMUSG00000028656.14) -137 ENSMUSG00000028656.14 ENSMUSG00000028656 ENSMUST00000151041 Cap1 protein_coding Interval_87259 chr19 47239978 47241270 + 0 NA exon (ENSMUSG00000006435.16, exon 3 of 6) protein_coding-exon (ENSMUSG00000006435.16, exon 3 of 6) -11619 ENSMUSG00000118029.1 ENSMUSG00000118029 ENSMUST00000237690 AC132288.1 TEC Interval_156514 chr8 49017827 49018371 + 0 NA Intergenic Intergenic -26181 ENSMUSG00000110503.1 ENSMUSG00000110503 ENSMUST00000212945 Gm45830 lincRNA Interval_101360 chr2 180775432 180777584 + 0 NA exon (ENSMUSG00000045493.4, exon 1 of 1) protein_coding-exon (ENSMUSG00000045493.4, exon 1 of 1) 392 ENSMUSG00000045493.4 ENSMUSG00000045493 ENSMUST00000108878 Bhlhe23 protein_coding Interval_169217 chr9 95598073 95600058 + 0 NA Intergenic Intergenic 23354 ENSMUSG00000101936.1 ENSMUSG00000101936 ENSMUST00000190143 Gm28164 processed_pseudogene Interval_110135 chr3 153636235 153637102 + 0 NA intron (ENSMUSG00000052544.9, intron 1 of 4) protein_coding-intron (ENSMUSG00000052544.9, intron 1 of 2) 14966 ENSMUSG00000089376.1 ENSMUSG00000089376 ENSMUST00000158751 Gm22136 misc_RNA Interval_117437 chr4 123674965 123676245 + 0 NA intron (ENSMUSG00000028649.21, intron 1 of 97) protein_coding-intron (ENSMUSG00000028649.21, intron 1 of 92) 9724 ENSMUSG00000087307.1 ENSMUSG00000087307 ENSMUST00000138861 Gm12925 antisense Interval_117728 chr4 125864170 125865903 + 0 NA Intergenic Intergenic 57381 ENSMUSG00000085562.7 ENSMUSG00000085562 ENSMUST00000144539 2610028E06Rik lincRNA Interval_35221 chr12 18413632 18413798 + 0 NA Intergenic Intergenic 25960 ENSMUSG00000113402.1 ENSMUSG00000113402 ENSMUST00000221998 Gm40848 processed_pseudogene Interval_50955 chr14 21075639 21076691 + 0 NA promoter-TSS (ENSMUSG00000039197.10) protein_coding-promoter-TSS (ENSMUSG00000039197.10) 23548 ENSMUSG00000039197.10 ENSMUSG00000039197 ENSMUST00000224974 Adk protein_coding Interval_120822 chr4 150826289 150827613 + 0 NA intron (ENSMUSG00000085097.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000085097.1, intron 1 of 2) 1218 ENSMUSG00000085097.1 ENSMUSG00000085097 ENSMUST00000133196 Gm13049 lincRNA Interval_87668 chr19 54123318 54124223 + 0 NA Intergenic Intergenic 39211 ENSMUSG00000117921.1 ENSMUSG00000117921 ENSMUST00000236398 Gm50186 lincRNA Interval_54927 chr14 76290713 76291142 + 0 NA Intergenic Intergenic 39470 ENSMUSG00000115625.1 ENSMUSG00000115625 ENSMUST00000227933 2900040C04Rik lincRNA Interval_164924 chr9 43131951 43133093 + 0 NA intron (ENSMUSG00000032015.16, intron 6 of 8) protein_coding-intron (ENSMUSG00000032015.16, intron 10 of 12) 10682 ENSMUSG00000032015.16 ENSMUSG00000032015 ENSMUST00000213862 Pou2f3 protein_coding Interval_11477 chr1 182102835 182103985 + 0 NA Intergenic Intergenic 24779 ENSMUSG00000103018.1 ENSMUSG00000103018 ENSMUST00000194902 Gm17968 processed_pseudogene Interval_41296 chr12 112557143 112557536 + 0 NA Intergenic Intergenic -40592 ENSMUSG00000054013.6 ENSMUSG00000054013 ENSMUST00000222836 Tmem179 protein_coding Interval_32854 chr11 112103452 112103690 + 0 NA Intergenic Intergenic -3867 ENSMUSG00000085324.1 ENSMUSG00000085324 ENSMUST00000146550 Gm11680 lincRNA Interval_48345 chr13 98365726 98367268 + 0 NA Intergenic Intergenic 12255 ENSMUSG00000078302.5 ENSMUSG00000078302 ENSMUST00000105098 Foxd1 protein_coding Interval_106575 chr3 97392803 97395474 + 0 NA Intergenic Intergenic 27882 ENSMUSG00000051392.5 ENSMUSG00000051392 ENSMUST00000060912 Olfr1402 protein_coding Interval_109679 chr3 145951946 145952323 + 0 NA Intergenic Intergenic 13849 ENSMUSG00000036873.13 ENSMUSG00000036873 ENSMUST00000188034 2410004B18Rik protein_coding Interval_66388 chr16 33529530 33530292 + 0 NA intron (ENSMUSG00000035506.16, intron 1 of 11) protein_coding-intron (ENSMUSG00000035506.16, intron 1 of 12) -86479 ENSMUSG00000035506.16 ENSMUSG00000035506 ENSMUST00000149291 Slc12a8 protein_coding Interval_81707 chr18 63743985 63744257 + 0 NA intron (ENSMUSG00000040560.10, intron 12 of 26) protein_coding-intron (ENSMUSG00000040560.10, intron 12 of 27) 5057 ENSMUSG00000040560.10 ENSMUSG00000040560 ENSMUST00000235428 Wdr7 protein_coding Interval_57041 chr15 5091047 5091783 + 0 NA Intergenic Intergenic -1132 ENSMUSG00000080720.2 ENSMUSG00000080720 ENSMUST00000121915 Gm16077 processed_pseudogene Interval_83174 chr18 82545875 82547683 + 0 NA intron (ENSMUSG00000041607.17, intron 3 of 5) protein_coding-intron (ENSMUSG00000041607.17, intron 3 of 6) -7767 ENSMUSG00000041607.17 ENSMUSG00000041607 ENSMUST00000150952 Mbp protein_coding Interval_122884 chr5 26887042 26888303 + 0 NA intron (ENSMUSG00000061576.15, intron 1 of 3) protein_coding-intron (ENSMUSG00000061576.15, intron 1 of 25) -27571 ENSMUSG00000080941.1 ENSMUSG00000080941 ENSMUST00000119293 Gm16056 processed_pseudogene Interval_86317 chr19 38670136 38670456 + 0 NA intron (ENSMUSG00000024998.17, intron 4 of 32) protein_coding-intron (ENSMUSG00000024998.17, intron 3 of 31) 34028 ENSMUSG00000117935.1 ENSMUSG00000117935 ENSMUST00000237606 Gm8717 processed_pseudogene Interval_125741 chr5 73761436 73762030 + 0 NA Intergenic Intergenic 102472 ENSMUSG00000029155.16 ENSMUSG00000029155 ENSMUST00000178631 Spata18 protein_coding Interval_156859 chr8 61270660 61271909 + 0 NA intron (ENSMUSG00000031642.9, intron 2 of 10) protein_coding-intron (ENSMUSG00000031642.9, intron 2 of 11) 17588 ENSMUSG00000099419.1 ENSMUSG00000099419 ENSMUST00000188654 1700001D01Rik antisense Interval_84381 chr19 10502594 10503615 + 0 NA exon (ENSMUSG00000024668.8, exon 4 of 4) protein_coding-exon (ENSMUSG00000024668.8, exon 4 of 4) -20176 ENSMUSG00000035179.4 ENSMUSG00000035179 ENSMUST00000236733 Ppp1r32 protein_coding Interval_105063 chr3 80850153 80850585 + 0 NA intron (ENSMUSG00000028020.16, intron 7 of 7) protein_coding-intron (ENSMUSG00000028020.16, intron 9 of 9) -47589 ENSMUSG00000033981.14 ENSMUSG00000033981 ENSMUST00000194164 Gria2 protein_coding Interval_134831 chr6 31947705 31948991 + 0 NA Intergenic Intergenic -101898 ENSMUSG00000029766.7 ENSMUSG00000029766 ENSMUST00000156267 1700012A03Rik protein_coding Interval_160059 chr8 106076745 106077948 + 0 NA intron (ENSMUSG00000031902.10, intron 1 of 3) protein_coding-intron (ENSMUSG00000031902.10, intron 1 of 9) -5472 ENSMUSG00000093345.2 ENSMUSG00000093345 ENSMUST00000175604 Gm27956 misc_RNA Interval_137536 chr6 72943311 72943717 + 0 NA Intergenic Intergenic -9722 ENSMUSG00000097569.2 ENSMUSG00000097569 ENSMUST00000180809 Gm26640 lincRNA Interval_20430 chr10 117575732 117575950 + 0 NA Intergenic Intergenic 13494 ENSMUSG00000112081.1 ENSMUSG00000112081 ENSMUST00000218739 Gm9004 processed_pseudogene Interval_46939 chr13 73574086 73575665 + 0 NA intron (ENSMUSG00000021609.6, intron 14 of 14) protein_coding-intron (ENSMUSG00000021609.6, intron 14 of 14) 38128 ENSMUSG00000021609.6 ENSMUSG00000021609 ENSMUST00000022100 Slc6a3 protein_coding Interval_120062 chr4 141598012 141600546 + 0 NA promoter-TSS (ENSMUSG00000006219.12) protein_coding-promoter-TSS (ENSMUSG00000006219.12) 6817 ENSMUSG00000006219.12 ENSMUSG00000006219 ENSMUST00000133874 Fblim1 protein_coding Interval_23289 chr11 21188748 21189607 + 0 NA Intergenic Intergenic 8799 ENSMUSG00000088223.1 ENSMUSG00000088223 ENSMUST00000157598 Gm22600 misc_RNA Interval_132614 chr5 146750366 146751001 + 0 NA intron (ENSMUSG00000029640.17, intron 4 of 6) protein_coding-intron (ENSMUSG00000029640.17, intron 6 of 8) 7765 ENSMUSG00000029640.17 ENSMUSG00000029640 ENSMUST00000124009 Usp12 protein_coding Interval_162096 chr8 125053177 125054918 + 0 NA promoter-TSS (ENSMUSG00000043051.17) protein_coding-promoter-TSS (ENSMUSG00000043051.17) -9968 ENSMUSG00000080516.1 ENSMUSG00000080516 ENSMUST00000116866 Gm22197 miRNA Interval_73953 chr17 45645863 45646249 + 0 NA intron (ENSMUSG00000058626.16, intron 3 of 21) protein_coding-intron (ENSMUSG00000058626.16, intron 3 of 21) 13241 ENSMUSG00000058626.16 ENSMUSG00000058626 ENSMUST00000151350 Capn11 protein_coding Interval_138018 chr6 84272426 84272638 + 0 NA intron (ENSMUSG00000107538.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000107538.1, intron 1 of 1) 47280 ENSMUSG00000107538.1 ENSMUSG00000107538 ENSMUST00000203565 Gm44127 lincRNA Interval_99259 chr2 158477600 158478691 + 0 NA intron (ENSMUSG00000027652.15, intron 1 of 2) protein_coding-intron (ENSMUSG00000027652.15, intron 25 of 29) 416 ENSMUSG00000027652.15 ENSMUSG00000027652 ENSMUST00000173458 Ralgapb protein_coding Interval_90674 chr2 31810086 31810772 + 0 NA exon (ENSMUSG00000043102.2, exon 1 of 2) protein_coding-exon (ENSMUSG00000043102.2, exon 1 of 2) 151 ENSMUSG00000043102.2 ENSMUSG00000043102 ENSMUST00000057407 Qrfp protein_coding Interval_97015 chr2 130512793 130513803 + 0 NA intron (ENSMUSG00000027303.18, intron 4 of 11) protein_coding-intron (ENSMUSG00000027303.18, intron 3 of 20) -10697 ENSMUSG00000115955.1 ENSMUSG00000115955 ENSMUST00000229108 9530056E24Rik TEC Interval_117694 chr4 125585437 125585665 + 0 NA intron (ENSMUSG00000001985.9, intron 1 of 15) protein_coding-intron (ENSMUSG00000001985.9, intron 1 of 15) 80802 ENSMUSG00000094403.1 ENSMUSG00000094403 ENSMUST00000102081 Mir692-2 miRNA Interval_154481 chr8 18594645 18595982 + 0 NA promoter-TSS (ENSMUSG00000039842.15) protein_coding-promoter-TSS (ENSMUSG00000039842.15) -263 ENSMUSG00000039842.15 ENSMUSG00000039842 ENSMUST00000141244 Mcph1 protein_coding Interval_150704 chr7 113607927 113608261 + 0 NA Intergenic Intergenic 15232 ENSMUSG00000109968.1 ENSMUSG00000109968 ENSMUST00000211320 Gm45612 processed_pseudogene Interval_103415 chr3 41408413 41409894 + 0 NA Intergenic Intergenic 32314 ENSMUSG00000089350.1 ENSMUSG00000089350 ENSMUST00000158725 Gm25487 snoRNA Interval_61856 chr15 84701941 84703022 + 0 NA intron (ENSMUSG00000036106.15, intron 8 of 8) protein_coding-intron (ENSMUSG00000036106.15, intron 7 of 7) -17571 ENSMUSG00000078954.9 ENSMUSG00000078954 ENSMUST00000169075 Arhgap8 protein_coding Interval_35488 chr12 23004443 23004956 + 0 NA intron (ENSMUSG00000073164.11, intron 1 of 4) lincRNA-intron (ENSMUSG00000073164.11, intron 1 of 2) 5268 ENSMUSG00000113552.1 ENSMUSG00000113552 ENSMUST00000220625 Gm48046 processed_pseudogene Interval_77759 chr18 3280654 3281463 + 0 NA promoter-TSS (ENSMUSG00000063889.16) protein_coding-promoter-TSS (ENSMUSG00000063889.16) -55680 ENSMUSG00000097746.2 ENSMUSG00000097746 ENSMUST00000234647 Gm6225 processed_transcript Interval_66571 chr16 35223181 35223571 + 0 NA intron (ENSMUSG00000022840.9, intron 1 of 20) protein_coding-intron (ENSMUSG00000022840.9, intron 1 of 20) 11547 ENSMUSG00000084581.1 ENSMUSG00000084581 ENSMUST00000122632 Gm25179 snRNA Interval_66115 chr16 31736717 31736931 + 0 NA intron (ENSMUSG00000022770.17, intron 1 of 2) protein_coding-intron (ENSMUSG00000022770.17, intron 4 of 24) 10518 ENSMUSG00000089011.1 ENSMUSG00000089011 ENSMUST00000158386 Gm24879 snoRNA Interval_133538 chr6 6216509 6217454 + 0 NA intron (ENSMUSG00000015112.15, intron 1 of 17) protein_coding-intron (ENSMUSG00000015112.15, intron 1 of 17) -31678 ENSMUSG00000093482.8 ENSMUSG00000093482 ENSMUST00000181343 Gm20619 lincRNA Interval_133270 chr5 150988177 150989707 + 0 NA exon (ENSMUSG00000058488.7, exon 4 of 5) protein_coding-exon (ENSMUSG00000058488.7, exon 4 of 5) 20359 ENSMUSG00000106963.1 ENSMUSG00000106963 ENSMUST00000201408 Gm8675 processed_pseudogene Interval_131556 chr5 138111061 138111387 + 0 NA Intergenic Intergenic 4317 ENSMUSG00000106102.1 ENSMUSG00000106102 ENSMUST00000199837 Gm43493 processed_pseudogene Interval_139255 chr6 97589041 97589639 + 0 NA intron (ENSMUSG00000030064.16, intron 1 of 7) protein_coding-intron (ENSMUSG00000030064.16, intron 1 of 23) -8248 ENSMUSG00000108093.1 ENSMUSG00000108093 ENSMUST00000204031 Gm44102 TEC Interval_10254 chr1 167617293 167618523 + 0 NA promoter-TSS (ENSMUSG00000015843.10) protein_coding-promoter-TSS (ENSMUSG00000015843.10) 19448 ENSMUSG00000015843.10 ENSMUSG00000015843 ENSMUST00000111380 Rxrg protein_coding Interval_145268 chr7 31059024 31059869 + 0 NA exon (ENSMUSG00000036560.14, exon 1 of 9) protein_coding-exon (ENSMUSG00000036560.14, exon 1 of 9) -4104 ENSMUSG00000036560.14 ENSMUSG00000036560 ENSMUST00000172001 Lgi4 protein_coding Interval_135002 chr6 34475889 34476777 + 0 NA promoter-TSS (ENSMUSG00000038871.5) protein_coding-promoter-TSS (ENSMUSG00000038871.5) -809 ENSMUSG00000038871.5 ENSMUSG00000038871 ENSMUST00000149131 Bpgm protein_coding Interval_103501 chr3 45261021 45261833 + 0 NA Intergenic Intergenic 11140 ENSMUSG00000103082.1 ENSMUSG00000103082 ENSMUST00000191710 Gm38124 TEC Interval_150949 chr7 116636070 116636296 + 0 NA Intergenic Intergenic -10941 ENSMUSG00000084492.1 ENSMUSG00000084492 ENSMUST00000122543 n-R5s157 rRNA Interval_34122 chr11 120762494 120763809 + 0 NA promoter-TSS (ENSMUSG00000078249.5) protein_coding-promoter-TSS (ENSMUSG00000078249.5) -492 ENSMUSG00000078249.5 ENSMUSG00000078249 ENSMUST00000178955 Hmga1b protein_coding Interval_6261 chr1 104956996 104957186 + 0 NA intron (ENSMUSG00000050840.8, intron 7 of 11) protein_coding-intron (ENSMUSG00000050840.8, intron 7 of 11) -44758 ENSMUSG00000089866.1 ENSMUSG00000089866 ENSMUST00000159213 Gm15699 antisense Interval_13237 chr10 13432097 13432326 + 0 NA intron (ENSMUSG00000062866.16, intron 1 of 12) protein_coding-intron (ENSMUSG00000062866.16, intron 1 of 12) -43480 ENSMUSG00000062866.16 ENSMUSG00000062866 ENSMUST00000154265 Phactr2 protein_coding Interval_143908 chr7 17073630 17075041 + 0 NA intron (ENSMUSG00000066760.12, intron 1 of 4) protein_coding-intron (ENSMUSG00000066760.12, intron 1 of 5) 4320 ENSMUSG00000108561.1 ENSMUSG00000108561 ENSMUST00000205602 Gm45219 processed_pseudogene Interval_47089 chr13 75571991 75572239 + 0 NA Intergenic Intergenic -47767 ENSMUSG00000113929.1 ENSMUSG00000113929 ENSMUST00000223378 Gm3926 processed_pseudogene Interval_113032 chr4 47091372 47094133 + 0 NA intron (ENSMUSG00000039774.12, intron 1 of 8) protein_coding-intron (ENSMUSG00000039774.12, intron 1 of 9) 829 ENSMUSG00000039774.12 ENSMUSG00000039774 ENSMUST00000107744 Galnt12 protein_coding Interval_98051 chr2 147193514 147195523 + 0 NA promoter-TSS (ENSMUSG00000027434.11) protein_coding-promoter-TSS (ENSMUSG00000027434.11) -276 ENSMUSG00000027434.11 ENSMUSG00000027434 ENSMUST00000172627 Nkx2-2 protein_coding Interval_143820 chr7 16491533 16492040 + 0 NA Intergenic Intergenic -6946 ENSMUSG00000099423.1 ENSMUSG00000099423 ENSMUST00000189720 Gm17826 processed_pseudogene Interval_55906 chr14 101946182 101947329 + 0 NA Intergenic Intergenic 36008 ENSMUSG00000115584.1 ENSMUSG00000115584 ENSMUST00000226515 Gm5854 processed_pseudogene Interval_22049 chr11 5995763 5996418 + 0 NA intron (ENSMUSG00000057897.14, intron 5 of 10) protein_coding-intron (ENSMUSG00000057897.14, intron 5 of 18) -11952 ENSMUSG00000057897.14 ENSMUSG00000057897 ENSMUST00000129098 Camk2b protein_coding Interval_131762 chr5 139722795 139723313 + 0 NA intron (ENSMUSG00000036718.17, intron 1 of 16) protein_coding-intron (ENSMUSG00000036718.17, intron 1 of 16) 9780 ENSMUSG00000036718.17 ENSMUSG00000036718 ENSMUST00000165645 Micall2 protein_coding Interval_169608 chr9 99421882 99422475 + 0 NA intron (ENSMUSG00000032470.17, intron 1 of 5) protein_coding-intron (ENSMUSG00000032470.17, intron 1 of 5) -27483 ENSMUSG00000032470.17 ENSMUSG00000032470 ENSMUST00000123771 Mras protein_coding Interval_170495 chr9 108314688 108314958 + 0 NA intron (ENSMUSG00000007815.13, intron 1 of 5) protein_coding-intron (ENSMUSG00000007815.13, intron 1 of 5) 8026 ENSMUSG00000007815.13 ENSMUSG00000007815 ENSMUST00000193424 Rhoa protein_coding Interval_5879 chr1 92906869 92907547 + 0 NA exon (ENSMUSG00000047067.7, exon 1 of 2) protein_coding-exon (ENSMUSG00000047067.7, exon 1 of 2) 227 ENSMUSG00000047067.7 ENSMUSG00000047067 ENSMUST00000060913 Dusp28 protein_coding Interval_118826 chr4 133919564 133919782 + 0 NA Intergenic Intergenic -33390 ENSMUSG00000003644.17 ENSMUSG00000003644 ENSMUST00000173961 Rps6ka1 protein_coding Interval_106994 chr3 102691592 102692254 + 0 NA Intergenic Intergenic -5062 ENSMUSG00000105498.1 ENSMUSG00000105498 ENSMUST00000196363 Gm42677 processed_pseudogene Interval_87100 chr19 46108478 46109227 + 0 NA Intergenic Intergenic -16078 ENSMUSG00000117703.1 ENSMUSG00000117703 ENSMUST00000236376 Gm50306 lincRNA Interval_36046 chr12 33664016 33664787 + 0 NA Intergenic Intergenic -167504 ENSMUSG00000112076.1 ENSMUSG00000112076 ENSMUST00000219348 Gm9368 processed_pseudogene Interval_82862 chr18 77569801 77571593 + 0 NA Intergenic Intergenic 57257 ENSMUSG00000117855.1 ENSMUSG00000117855 ENSMUST00000236419 Gm50197 processed_pseudogene Interval_62439 chr15 92899746 92900165 + 0 NA Intergenic Intergenic -33934 ENSMUSG00000116309.1 ENSMUSG00000116309 ENSMUST00000230405 Gm49418 lincRNA Interval_167340 chr9 67575988 67576200 + 0 NA Intergenic Intergenic -124087 ENSMUSG00000111819.1 ENSMUSG00000111819 ENSMUST00000216655 Gm47110 processed_pseudogene Interval_102956 chr3 33599466 33600123 + 0 NA Intergenic Intergenic -21814 ENSMUSG00000103423.1 ENSMUSG00000103423 ENSMUST00000195812 Gm5845 processed_pseudogene Interval_29434 chr11 83994120 83994997 + 0 NA intron (ENSMUSG00000034940.15, intron 11 of 20) protein_coding-intron (ENSMUSG00000034940.15, intron 11 of 21) -24643 ENSMUSG00000034940.15 ENSMUSG00000034940 ENSMUST00000132887 Synrg protein_coding Interval_25231 chr11 45724039 45726121 + 0 NA Intergenic Intergenic -83007 ENSMUSG00000086686.1 ENSMUSG00000086686 ENSMUST00000137002 F630206G17Rik processed_transcript Interval_152265 chr7 131119386 131120965 + 0 NA intron (ENSMUSG00000047517.12, intron 40 of 40) protein_coding-intron (ENSMUSG00000047517.12, intron 46 of 46) 26139 ENSMUSG00000013668.9 ENSMUSG00000013668 ENSMUST00000070980 4933402N03Rik protein_coding Interval_56595 chr14 120685825 120686246 + 0 NA Intergenic Intergenic -27043 ENSMUSG00000115630.1 ENSMUSG00000115630 ENSMUST00000226406 Rpl19-ps5 processed_pseudogene Interval_170111 chr9 104795995 104797351 + 0 NA intron (ENSMUSG00000032564.16, intron 2 of 8) protein_coding-intron (ENSMUSG00000032564.16, intron 2 of 15) -76006 ENSMUSG00000032564.16 ENSMUSG00000032564 ENSMUST00000213452 Cpne4 protein_coding Interval_62805 chr15 97112080 97112481 + 0 NA Intergenic Intergenic 54964 ENSMUSG00000116295.1 ENSMUSG00000116295 ENSMUST00000229491 Gm32885 lincRNA Interval_71055 chr17 17516033 17516946 + 0 NA Intergenic Intergenic 16146 ENSMUSG00000116532.1 ENSMUSG00000116532 ENSMUST00000232178 Gm5232 processed_pseudogene Interval_54571 chr14 70727440 70728379 + 0 NA intron (ENSMUSG00000022100.14, intron 1 of 21) protein_coding-intron (ENSMUSG00000022100.14, intron 1 of 27) -19874 ENSMUSG00000022100.14 ENSMUSG00000022100 ENSMUST00000227550 Xpo7 protein_coding Interval_32860 chr11 112228613 112228804 + 0 NA Intergenic Intergenic 121270 ENSMUSG00000085324.1 ENSMUSG00000085324 ENSMUST00000146550 Gm11680 lincRNA Interval_134059 chr6 18372096 18373208 + 0 NA intron (ENSMUSG00000000416.16, intron 18 of 18) protein_coding-intron (ENSMUSG00000000416.16, intron 22 of 22) -52032 ENSMUSG00000084947.1 ENSMUSG00000084947 ENSMUST00000137958 Gm15594 antisense Interval_87017 chr19 45566216 45566508 + 0 NA intron (ENSMUSG00000041035.9, intron 3 of 6) protein_coding-intron (ENSMUSG00000041035.9, intron 2 of 5) -5831 ENSMUSG00000025218.6 ENSMUSG00000025218 ENSMUST00000026239 Poll protein_coding Interval_124894 chr5 59817132 59817804 + 0 NA Intergenic Intergenic 39556 ENSMUSG00000104889.1 ENSMUSG00000104889 ENSMUST00000196579 Gm43043 processed_pseudogene Interval_138603 chr6 90338468 90338716 + 0 NA exon (ENSMUSG00000034456.15, exon 5 of 20) protein_coding-exon (ENSMUSG00000034456.15, exon 5 of 20) 5303 ENSMUSG00000034456.15 ENSMUSG00000034456 ENSMUST00000164761 Uroc1 protein_coding Interval_32554 chr11 108504597 108504823 + 0 NA intron (ENSMUSG00000020728.17, intron 8 of 24) protein_coding-intron (ENSMUSG00000020728.17, intron 11 of 27) 28954 ENSMUSG00000086761.1 ENSMUSG00000086761 ENSMUST00000137907 Cep112os1 antisense Interval_169226 chr9 95653391 95653726 + 0 NA intron (ENSMUSG00000015354.8, intron 2 of 8) protein_coding-intron (ENSMUSG00000015354.8, intron 2 of 8) -5087 ENSMUSG00000086585.1 ENSMUSG00000086585 ENSMUST00000126025 Gm16126 antisense Interval_11938 chr1 187338555 187339057 + 0 NA intron (ENSMUSG00000039210.16, intron 7 of 8) protein_coding-intron (ENSMUSG00000039210.16, intron 8 of 9) 38663 ENSMUSG00000104245.1 ENSMUSG00000104245 ENSMUST00000192285 Gm38155 antisense Interval_164101 chr9 31482526 31482692 + 0 NA intron (ENSMUSG00000111655.1, intron 1 of 1) bidirectional_promoter_lncRNA-intron (ENSMUSG00000111655.1, intron 1 of 1) -18408 ENSMUSG00000041737.8 ENSMUSG00000041737 ENSMUST00000216875 Tmem45b protein_coding Interval_82445 chr18 74054387 74054758 + 0 NA intron (ENSMUSG00000024558.12, intron 1 of 1) protein_coding-intron (ENSMUSG00000024558.12, intron 1 of 5) 9820 ENSMUSG00000024558.12 ENSMUSG00000024558 ENSMUST00000160601 Mapk4 protein_coding Interval_128779 chr5 115210566 115210869 + 0 NA Intergenic Intergenic 12374 ENSMUSG00000083182.1 ENSMUSG00000083182 ENSMUST00000122278 Gm13828 processed_pseudogene Interval_129691 chr5 121790984 121791623 + 0 NA intron (ENSMUSG00000042605.16, intron 4 of 13) protein_coding-intron (ENSMUSG00000042605.16, intron 14 of 24) 27970 ENSMUSG00000099063.1 ENSMUSG00000099063 ENSMUST00000183860 Mir7031 miRNA Interval_145302 chr7 31520769 31520973 + 0 NA Intergenic Intergenic 13430 ENSMUSG00000101065.1 ENSMUSG00000101065 ENSMUST00000189491 Scgb1b5-ps unprocessed_pseudogene Interval_27832 chr11 70297702 70298300 + 0 NA Intergenic Intergenic 24447 ENSMUSG00000018907.10 ENSMUSG00000018907 ENSMUST00000149060 Alox12e protein_coding Interval_117957 chr4 127328525 127331187 + 0 NA promoter-TSS (ENSMUSG00000042367.12) protein_coding-promoter-TSS (ENSMUSG00000042367.12) -695 ENSMUSG00000042367.12 ENSMUSG00000042367 ENSMUST00000046532 Gjb3 protein_coding Interval_36404 chr12 43813676 43813981 + 0 NA intron (ENSMUSG00000112258.1, intron 2 of 2) lincRNA-intron (ENSMUSG00000112258.1, intron 2 of 2) 30365 ENSMUSG00000112258.1 ENSMUSG00000112258 ENSMUST00000217666 Gm10165 lincRNA Interval_18670 chr10 88983243 88984174 + 0 NA intron (ENSMUSG00000035189.17, intron 17 of 26) protein_coding-intron (ENSMUSG00000035189.17, intron 18 of 27) 97716 ENSMUSG00000020062.7 ENSMUSG00000020062 ENSMUST00000020255 Slc5a8 protein_coding Interval_29540 chr11 84780286 84781364 + 0 NA Intergenic Intergenic -2996 ENSMUSG00000087407.1 ENSMUSG00000087407 ENSMUST00000155046 Gm11431 lincRNA Interval_71763 chr17 25928700 25929431 + 0 NA TTS (ENSMUSG00000025728.16) protein_coding-TTS (ENSMUSG00000025728.16) -9423 ENSMUSG00000025730.14 ENSMUSG00000025730 ENSMUST00000164738 Rab40c protein_coding Interval_28882 chr11 79030302 79031613 + 0 NA TTS (ENSMUSG00000085941.1) antisense-TTS (ENSMUSG00000085941.1) 7360 ENSMUSG00000085941.1 ENSMUSG00000085941 ENSMUST00000143473 Gm11201 antisense Interval_62781 chr15 96848176 96848412 + 0 NA Intergenic Intergenic 75111 ENSMUSG00000116202.1 ENSMUSG00000116202 ENSMUST00000229718 Rpl10a-ps3 processed_pseudogene Interval_72914 chr17 33393501 33395025 + 0 NA promoter-TSS (ENSMUSG00000055240.17) protein_coding-promoter-TSS (ENSMUSG00000055240.17) 342 ENSMUSG00000055240.17 ENSMUSG00000055240 ENSMUST00000183047 Zfp101 protein_coding Interval_122289 chr5 20964191 20964831 + 0 NA Intergenic Intergenic 13522 ENSMUSG00000101013.1 ENSMUSG00000101013 ENSMUST00000190567 A630072M18Rik antisense Interval_143370 chr7 6183569 6184554 + 0 NA TTS (ENSMUSG00000044876.15) protein_coding-TTS (ENSMUSG00000044876.15) 4086 ENSMUSG00000109165.1 ENSMUSG00000109165 ENSMUST00000208578 Gm45148 sense_intronic Interval_87141 chr19 46417641 46417910 + 0 NA intron (ENSMUSG00000025231.17, intron 1 of 5) protein_coding-intron (ENSMUSG00000025231.17, intron 2 of 11) 16651 ENSMUSG00000025231.17 ENSMUSG00000025231 ENSMUST00000144341 Sufu protein_coding Interval_129304 chr5 118796547 118797513 + 0 NA Intergenic Intergenic 46643 ENSMUSG00000018076.12 ENSMUSG00000018076 ENSMUST00000202787 Med13l protein_coding Interval_69582 chr16 94420525 94420729 + 0 NA TTS (ENSMUSG00000040785.19) protein_coding-TTS (ENSMUSG00000040785.19) -8446 ENSMUSG00000075829.1 ENSMUSG00000075829 ENSMUST00000101881 Gm23692 snRNA Interval_156546 chr8 50763725 50763988 + 0 NA intron (ENSMUSG00000110246.1, intron 5 of 6) lincRNA-intron (ENSMUSG00000110246.1, intron 5 of 6) 153141 ENSMUSG00000110246.1 ENSMUSG00000110246 ENSMUST00000211313 C130073E24Rik lincRNA Interval_102452 chr3 26748331 26748596 + 0 NA intron (ENSMUSG00000039335.11, intron 3 of 9) protein_coding-intron (ENSMUSG00000039335.11, intron 3 of 10) 110813 ENSMUSG00000039335.11 ENSMUSG00000039335 ENSMUST00000108305 Spata16 protein_coding Interval_69307 chr16 92095747 92096637 + 0 NA exon (ENSMUSG00000086331.1, exon 2 of 2) sense_intronic-exon (ENSMUSG00000086331.1, exon 2 of 2) 1624 ENSMUSG00000086331.1 ENSMUSG00000086331 ENSMUST00000124376 Gm16310 sense_intronic Interval_96141 chr2 120001019 120002291 + 0 NA intron (ENSMUSG00000033902.12, intron 2 of 30) protein_coding-intron (ENSMUSG00000033902.12, intron 2 of 29) -15862 ENSMUSG00000098632.1 ENSMUSG00000098632 ENSMUST00000184907 Mir7665 miRNA Interval_24427 chr11 33179698 33181509 + 0 NA Intergenic Intergenic 7684 ENSMUSG00000099902.1 ENSMUSG00000099902 ENSMUST00000119969 Gm12115 processed_pseudogene Interval_108664 chr3 129914339 129915367 + 0 NA TTS (ENSMUSG00000027994.14) protein_coding-TTS (ENSMUSG00000027994.14) 13352 ENSMUSG00000027997.9 ENSMUSG00000027997 ENSMUST00000152622 Casp6 protein_coding Interval_102767 chr3 30896058 30898034 + 0 NA exon (ENSMUSG00000037661.14, exon 4 of 4) protein_coding-exon (ENSMUSG00000037661.14, exon 4 of 4) 41053 ENSMUSG00000037661.14 ENSMUSG00000037661 ENSMUST00000147697 Gpr160 protein_coding Interval_94732 chr2 93868684 93869649 + 0 NA promoter-TSS (ENSMUSG00000075023.11) protein_coding-promoter-TSS (ENSMUSG00000075023.11) -12434 ENSMUSG00000075023.11 ENSMUSG00000075023 ENSMUST00000128995 Accsl protein_coding Interval_110910 chr4 10060344 10060617 + 0 NA Intergenic Intergenic 101126 ENSMUSG00000082501.1 ENSMUSG00000082501 ENSMUST00000120635 Gm11835 processed_pseudogene Interval_101345 chr2 180652518 180652836 + 0 NA Intergenic Intergenic -10088 ENSMUSG00000038932.13 ENSMUSG00000038932 ENSMUST00000131881 Tcfl5 protein_coding Interval_45574 chr13 55974177 55974518 + 0 NA intron (ENSMUSG00000114493.2, intron 4 of 5) antisense-intron (ENSMUSG00000114493.2, intron 4 of 5) 55887 ENSMUSG00000114229.1 ENSMUSG00000114229 ENSMUST00000225745 Gm47072 processed_pseudogene Interval_151224 chr7 119848752 119849542 + 0 NA TTS (ENSMUSG00000030924.16) protein_coding-TTS (ENSMUSG00000030924.16) 5282 ENSMUSG00000030924.16 ENSMUSG00000030924 ENSMUST00000151248 Rexo5 protein_coding Interval_19863 chr10 110653444 110654131 + 0 NA Intergenic Intergenic -18984 ENSMUSG00000112872.1 ENSMUSG00000112872 ENSMUST00000218721 Gm47058 processed_pseudogene Interval_123541 chr5 33358322 33358525 + 0 NA intron (ENSMUSG00000079562.7, intron 2 of 3) protein_coding-intron (ENSMUSG00000079562.7, intron 1 of 8) -4148 ENSMUSG00000079562.7 ENSMUSG00000079562 ENSMUST00000202839 Maea protein_coding Interval_85318 chr19 24630984 24631593 + 0 NA Intergenic Intergenic -42720 ENSMUSG00000048572.5 ENSMUSG00000048572 ENSMUST00000057243 Tmem252 protein_coding Interval_101654 chr3 8593611 8593810 + 0 NA Intergenic Intergenic 22794 ENSMUSG00000098047.1 ENSMUSG00000098047 ENSMUST00000182857 Gm18822 processed_pseudogene Interval_119027 chr4 135069791 135070026 + 0 NA Intergenic Intergenic 50539 ENSMUSG00000086884.1 ENSMUSG00000086884 ENSMUST00000146152 Gm16225 lincRNA Interval_64642 chr16 13843314 13843779 + 0 NA intron (ENSMUSG00000022680.14, intron 16 of 22) protein_coding-intron (ENSMUSG00000022680.14, intron 16 of 23) 24314 ENSMUSG00000099314.1 ENSMUSG00000099314 ENSMUST00000183701 Gm27734 miRNA Interval_101268 chr2 179998124 179999278 + 0 NA Intergenic Intergenic 5513 ENSMUSG00000082850.1 ENSMUSG00000082850 ENSMUST00000117586 Gm14299 processed_pseudogene Interval_171885 chr9 122015718 122016184 + 0 NA Intergenic Intergenic -3811 ENSMUSG00000110729.1 ENSMUSG00000110729 ENSMUST00000215635 Gm47117 lincRNA Interval_106610 chr3 97737429 97737737 + 0 NA intron (ENSMUSG00000038170.15, intron 24 of 45) protein_coding-intron (ENSMUSG00000038170.15, intron 24 of 46) 7054 ENSMUSG00000105245.1 ENSMUSG00000105245 ENSMUST00000200435 Gm31305 antisense Interval_137636 chr6 76984260 76985474 + 0 NA intron (ENSMUSG00000063063.12, intron 2 of 7) protein_coding-intron (ENSMUSG00000063063.12, intron 9 of 17) 159076 ENSMUSG00000063063.12 ENSMUSG00000063063 ENSMUST00000160252 Ctnna2 protein_coding Interval_128579 chr5 114137758 114139412 + 0 NA TTS (ENSMUSG00000029591.14) protein_coding-TTS (ENSMUSG00000029591.14) 6505 ENSMUSG00000029591.14 ENSMUSG00000029591 ENSMUST00000200479 Ung protein_coding Interval_75005 chr17 59762183 59762656 + 0 NA Intergenic Intergenic -92798 ENSMUSG00000117191.1 ENSMUSG00000117191 ENSMUST00000233598 Gm49853 lincRNA Interval_158915 chr8 87912802 87913815 + 0 NA intron (ENSMUSG00000045333.15, intron 1 of 7) protein_coding-intron (ENSMUSG00000045333.15, intron 1 of 7) 40554 ENSMUSG00000045333.15 ENSMUSG00000045333 ENSMUST00000173092 Zfp423 protein_coding Interval_13582 chr10 19933605 19935263 + 0 NA promoter-TSS (ENSMUSG00000071369.11) protein_coding-promoter-TSS (ENSMUSG00000071369.11) -26783 ENSMUSG00000020003.16 ENSMUSG00000020003 ENSMUST00000214951 Pex7 protein_coding Interval_148529 chr7 82174423 82175619 + 0 NA promoter-TSS (ENSMUSG00000030638.13) protein_coding-promoter-TSS (ENSMUSG00000030638.13) -135 ENSMUSG00000030638.13 ENSMUSG00000030638 ENSMUST00000178526 Sh3gl3 protein_coding Interval_65337 chr16 21663267 21665900 + 0 NA intron (ENSMUSG00000043391.10, intron 1 of 1) protein_coding-intron (ENSMUSG00000043391.10, intron 1 of 1) 29997 ENSMUSG00000043391.10 ENSMUSG00000043391 ENSMUST00000232634 2510009E07Rik protein_coding Interval_42642 chr13 17664613 17665672 + 0 NA intron (ENSMUSG00000055137.7, intron 1 of 1) protein_coding-intron (ENSMUSG00000055137.7, intron 3 of 13) 29595 ENSMUSG00000055137.7 ENSMUSG00000055137 ENSMUST00000221467 Sugct protein_coding Interval_45314 chr13 54272092 54272469 + 0 NA Intergenic Intergenic 26984 ENSMUSG00000113327.1 ENSMUSG00000113327 ENSMUST00000221038 Gm48615 lincRNA Interval_54612 chr14 71638835 71639171 + 0 NA Intergenic Intergenic 181548 ENSMUSG00000098064.1 ENSMUSG00000098064 ENSMUST00000183221 Gm9192 processed_pseudogene Interval_33969 chr11 119739109 119740115 + 0 NA intron (ENSMUSG00000025583.15, intron 4 of 32) protein_coding-intron (ENSMUSG00000025583.15, intron 4 of 33) -6789 ENSMUSG00000088670.1 ENSMUSG00000088670 ENSMUST00000158045 Gm23663 snoRNA Interval_73587 chr17 40837166 40837585 + 0 NA intron (ENSMUSG00000023926.8, intron 9 of 9) protein_coding-intron (ENSMUSG00000023926.8, intron 9 of 9) -16661 ENSMUSG00000098082.1 ENSMUSG00000098082 ENSMUST00000182867 Gm20574 unitary_pseudogene Interval_25457 chr11 48709106 48710085 + 0 NA Intergenic Intergenic 24886 ENSMUSG00000088425.1 ENSMUSG00000088425 ENSMUST00000157800 Gm24422 snoRNA Interval_82182 chr18 68497248 68497745 + 0 NA Intergenic Intergenic -61926 ENSMUSG00000117811.1 ENSMUSG00000117811 ENSMUST00000238121 Gm29677 lincRNA Interval_95118 chr2 104017647 104017860 + 0 NA intron (ENSMUSG00000046085.7, intron 3 of 4) protein_coding-intron (ENSMUSG00000046085.7, intron 3 of 4) -10095 ENSMUSG00000027180.12 ENSMUSG00000027180 ENSMUST00000102565 Fbxo3 protein_coding Interval_147557 chr7 68263698 68264755 + 0 NA promoter-TSS (ENSMUSG00000030553.3) protein_coding-promoter-TSS (ENSMUSG00000030553.3) 7 ENSMUSG00000030553.3 ENSMUSG00000030553 ENSMUST00000207874 Pgpep1l protein_coding Interval_122746 chr5 25070828 25071720 + 0 NA intron (ENSMUSG00000028944.14, intron 1 of 15) protein_coding-intron (ENSMUSG00000028944.14, intron 1 of 15) -29709 ENSMUSG00000043833.6 ENSMUSG00000043833 ENSMUST00000128569 2900005J15Rik processed_transcript Interval_62095 chr15 86477171 86477624 + 0 NA intron (ENSMUSG00000051864.10, intron 12 of 12) protein_coding-intron (ENSMUSG00000051864.10, intron 12 of 12) -2299 ENSMUSG00000115918.1 ENSMUSG00000115918 ENSMUST00000229685 A930001M01Rik antisense Interval_149787 chr7 101504759 101505200 + 0 NA exon (ENSMUSG00000030653.17, exon 20 of 32) protein_coding-exon (ENSMUSG00000030653.17, exon 20 of 32) 29603 ENSMUSG00000065446.1 ENSMUSG00000065446 ENSMUST00000083512 Mir139 miRNA Interval_15400 chr10 45473161 45474014 + 0 NA intron (ENSMUSG00000063804.8, intron 1 of 3) protein_coding-intron (ENSMUSG00000063804.8, intron 2 of 3) 12808 ENSMUSG00000063804.8 ENSMUSG00000063804 ENSMUST00000214555 Lin28b protein_coding Interval_136369 chr6 53861157 53861358 + 0 NA intron (ENSMUSG00000108175.1, intron 4 of 4) antisense-intron (ENSMUSG00000108175.1, intron 4 of 4) 10891 ENSMUSG00000094527.1 ENSMUSG00000094527 ENSMUST00000178568 Gm22910 snoRNA Interval_97902 chr2 145426397 145426631 + 0 NA intron (ENSMUSG00000063873.10, intron 2 of 16) protein_coding-intron (ENSMUSG00000063873.10, intron 1 of 15) 55217 ENSMUSG00000088213.1 ENSMUSG00000088213 ENSMUST00000157588 Gm22390 misc_RNA Interval_157063 chr8 64889010 64889312 + 0 NA Intergenic Intergenic 22816 ENSMUSG00000109613.1 ENSMUSG00000109613 ENSMUST00000211544 Gm45405 processed_pseudogene Interval_37037 chr12 56689188 56690449 + 0 NA TTS (ENSMUSG00000089894.2) antisense-TTS (ENSMUSG00000089894.2) -1949 ENSMUSG00000001497.18 ENSMUSG00000001497 ENSMUST00000152848 Pax9 protein_coding Interval_172490 chrX 21334549 21334828 + 0 NA promoter-TSS (ENSMUSG00000087586.1) lincRNA-promoter-TSS (ENSMUSG00000087586.1) 39 ENSMUSG00000087586.1 ENSMUSG00000087586 ENSMUST00000123014 Gm6938 lincRNA Interval_17054 chr10 70895954 70896366 + 0 NA intron (ENSMUSG00000047692.6, intron 3 of 5) antisense-intron (ENSMUSG00000047692.6, intron 3 of 6) 14056 ENSMUSG00000094703.1 ENSMUSG00000094703 ENSMUST00000178420 Gm24486 snRNA Interval_157975 chr8 77483751 77484510 + 0 NA intron (ENSMUSG00000037148.8, intron 1 of 21) protein_coding-intron (ENSMUSG00000037148.8, intron 1 of 22) -32926 ENSMUSG00000097882.2 ENSMUSG00000097882 ENSMUST00000181420 0610038B21Rik antisense Interval_26977 chr11 62029549 62031445 + 0 NA intron (ENSMUSG00000042331.13, intron 2 of 14) protein_coding-intron (ENSMUSG00000042331.13, intron 2 of 7) 11633 ENSMUSG00000042331.13 ENSMUSG00000042331 ENSMUST00000202179 Specc1 protein_coding Interval_122831 chr5 25875729 25876465 + 0 NA Intergenic Intergenic 50193 ENSMUSG00000105052.4 ENSMUSG00000105052 ENSMUST00000167847 Gm21655 processed_transcript Interval_106645 chr3 98045697 98046677 + 0 NA intron (ENSMUSG00000027878.11, intron 1 of 7) protein_coding-intron (ENSMUSG00000027878.11, intron 1 of 33) 15500 ENSMUSG00000105728.1 ENSMUSG00000105728 ENSMUST00000199630 Gm42819 TEC Interval_96171 chr2 120251422 120252670 + 0 NA Intergenic Intergenic -6448 ENSMUSG00000087555.1 ENSMUSG00000087555 ENSMUST00000155641 Gm13997 processed_transcript Interval_140564 chr6 119559733 119559937 + 0 NA Intergenic Intergenic -11106 ENSMUSG00000108282.1 ENSMUSG00000108282 ENSMUST00000204314 Gm44317 antisense Interval_108785 chr3 131260398 131261096 + 0 NA intron (ENSMUSG00000027984.8, intron 1 of 2) protein_coding-intron (ENSMUSG00000027984.8, intron 1 of 7) 11277 ENSMUSG00000027984.8 ENSMUSG00000027984 ENSMUST00000152427 Hadh protein_coding Interval_142549 chr6 143205659 143206002 + 0 NA exon (ENSMUSG00000030275.6, exon 8 of 8) protein_coding-exon (ENSMUSG00000030275.6, exon 8 of 8) 15618 ENSMUSG00000107802.1 ENSMUSG00000107802 ENSMUST00000204351 1700126G02Rik antisense Interval_131893 chr5 140639730 140639953 + 0 NA intron (ENSMUSG00000036565.7, intron 1 of 12) protein_coding-intron (ENSMUSG00000036565.7, intron 1 of 13) 9156 ENSMUSG00000036565.7 ENSMUSG00000036565 ENSMUST00000200302 Ttyh3 protein_coding Interval_76508 chr17 80662853 80665173 + 0 NA exon (ENSMUSG00000024242.15, exon 3 of 34) protein_coding-exon (ENSMUSG00000024242.15, exon 3 of 34) -39027 ENSMUSG00000024242.15 ENSMUSG00000024242 ENSMUST00000234486 Map4k3 protein_coding Interval_157468 chr8 70558549 70558844 + 0 NA intron (ENSMUSG00000070002.7, intron 1 of 11) protein_coding-intron (ENSMUSG00000070002.7, intron 1 of 11) 19239 ENSMUSG00000070002.7 ENSMUSG00000070002 ENSMUST00000093454 Ell protein_coding Interval_74112 chr17 46600743 46602390 + 0 NA intron (ENSMUSG00000023972.10, intron 1 of 19) protein_coding-intron (ENSMUSG00000023972.10, intron 1 of 19) -28616 ENSMUSG00000023972.10 ENSMUSG00000023972 ENSMUST00000044442 Ptk7 protein_coding Interval_124304 chr5 43800654 43801025 + 0 NA intron (ENSMUSG00000039753.16, intron 1 of 10) protein_coding-intron (ENSMUSG00000039753.16, intron 1 of 10) 7904 ENSMUSG00000104701.1 ENSMUSG00000104701 ENSMUST00000199304 Gm42555 lincRNA Interval_34436 chr12 4152046 4152423 + 0 NA intron (ENSMUSG00000020654.15, intron 2 of 20) protein_coding-intron (ENSMUSG00000020654.15, intron 1 of 20) 19131 ENSMUSG00000020654.15 ENSMUSG00000020654 ENSMUST00000127110 Adcy3 protein_coding Interval_39737 chr12 95927845 95928154 + 0 NA Intergenic Intergenic 119121 ENSMUSG00000059695.4 ENSMUSG00000059695 ENSMUST00000073560 1700019M22Rik processed_pseudogene Interval_108698 chr3 130440431 130440720 + 0 NA intron (ENSMUSG00000058897.18, intron 7 of 37) protein_coding-intron (ENSMUSG00000058897.18, intron 7 of 37) -98914 ENSMUSG00000105011.1 ENSMUSG00000105011 ENSMUST00000196743 Gm43210 TEC Interval_84242 chr19 8982490 8983612 + 0 NA Intergenic Intergenic -6233 ENSMUSG00000069833.13 ENSMUSG00000069833 ENSMUST00000237033 Ahnak protein_coding Interval_81325 chr18 58033171 58033710 + 0 NA intron (ENSMUSG00000024598.9, intron 2 of 2) protein_coding-intron (ENSMUSG00000024598.9, intron 55 of 64) 106235 ENSMUSG00000024597.11 ENSMUSG00000024597 ENSMUST00000236673 Slc12a2 protein_coding Interval_129966 chr5 123363720 123363980 + 0 NA intron (ENSMUSG00000029438.9, intron 6 of 7) protein_coding-intron (ENSMUSG00000029438.9, intron 4 of 5) 3018 ENSMUSG00000065191.1 ENSMUSG00000065191 ENSMUST00000083257 Gm23458 snRNA Interval_105061 chr3 80800479 80801814 + 0 NA exon (ENSMUSG00000033981.14, exon 2 of 2) protein_coding-exon (ENSMUSG00000033981.14, exon 2 of 2) 1634 ENSMUSG00000033981.14 ENSMUSG00000033981 ENSMUST00000194164 Gria2 protein_coding Interval_133221 chr5 150652656 150652961 + 0 NA intron (ENSMUSG00000029655.17, intron 1 of 2) protein_coding-intron (ENSMUSG00000029655.17, intron 2 of 5) 13375 ENSMUSG00000029655.17 ENSMUSG00000029655 ENSMUST00000201390 N4bp2l2 protein_coding Interval_2429 chr1 39264013 39265721 + 0 NA intron (ENSMUSG00000026077.15, intron 2 of 2) protein_coding-intron (ENSMUSG00000026077.15, intron 2 of 20) 11698 ENSMUSG00000092553.1 ENSMUSG00000092553 ENSMUST00000174365 Gm20428 processed_pseudogene Interval_48435 chr13 99015971 99017220 + 0 NA intron (ENSMUSG00000114414.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000114414.1, intron 1 of 1) 9496 ENSMUSG00000114414.1 ENSMUSG00000114414 ENSMUST00000223781 A930014D07Rik lincRNA Interval_90908 chr2 33426244 33427158 + 0 NA intron (ENSMUSG00000068966.10, intron 1 of 1) protein_coding-intron (ENSMUSG00000068966.10, intron 1 of 1) 4616 ENSMUSG00000068966.10 ENSMUSG00000068966 ENSMUST00000134589 Zbtb34 protein_coding Interval_61402 chr15 81360295 81361458 + 0 NA promoter-TSS (ENSMUSG00000022404.8) protein_coding-promoter-TSS (ENSMUSG00000022404.8) -99 ENSMUSG00000022404.8 ENSMUSG00000022404 ENSMUST00000231078 Slc25a17 protein_coding Interval_131158 chr5 135476411 135476666 + 0 NA intron (ENSMUSG00000039959.13, intron 1 of 1) protein_coding-intron (ENSMUSG00000039959.13, intron 1 of 30) -3119 ENSMUSG00000106758.1 ENSMUSG00000106758 ENSMUST00000201839 Gm42731 TEC Interval_23866 chr11 27313814 27314046 + 0 NA Intergenic Intergenic 5048 ENSMUSG00000088438.1 ENSMUSG00000088438 ENSMUST00000157813 Gm25387 snoRNA Interval_8707 chr1 149370192 149370557 + 0 NA Intergenic Intergenic 39571 ENSMUSG00000102314.1 ENSMUSG00000102314 ENSMUST00000194210 Gm37630 TEC Interval_40477 chr12 105092823 105094536 + 0 NA Intergenic Intergenic -41517 ENSMUSG00000113051.1 ENSMUSG00000113051 ENSMUST00000222354 Gm47672 processed_pseudogene Interval_169324 chr9 96398026 96399628 + 0 NA Intergenic Intergenic 39311 ENSMUSG00000056418.3 ENSMUSG00000056418 ENSMUST00000070500 BC043934 lincRNA Interval_22283 chr11 8532036 8533227 + 0 NA intron (ENSMUSG00000020422.14, intron 10 of 30) protein_coding-intron (ENSMUSG00000020422.14, intron 10 of 30) 132050 ENSMUSG00000020422.14 ENSMUSG00000020422 ENSMUST00000134823 Tns3 protein_coding Interval_73763 chr17 43389497 43390098 + 0 NA intron (ENSMUSG00000056492.6, intron 1 of 3) protein_coding-intron (ENSMUSG00000056492.6, intron 1 of 20) 29346 ENSMUSG00000056492.6 ENSMUSG00000056492 ENSMUST00000225004 Adgrf5 protein_coding Interval_9080 chr1 153468126 153468515 + 0 NA intron (ENSMUSG00000042699.11, intron 10 of 14) protein_coding-intron (ENSMUSG00000042699.11, intron 14 of 27) 9819 ENSMUSG00000042699.11 ENSMUSG00000042699 ENSMUST00000189425 Dhx9 protein_coding Interval_28895 chr11 79113262 79113429 + 0 NA intron (ENSMUSG00000018334.18, intron 1 of 12) protein_coding-intron (ENSMUSG00000018334.18, intron 1 of 18) -53509 ENSMUSG00000018334.18 ENSMUSG00000018334 ENSMUST00000129463 Ksr1 protein_coding Interval_154526 chr8 18945815 18946597 + 0 NA intron (ENSMUSG00000039814.15, intron 2 of 7) protein_coding-intron (ENSMUSG00000039814.15, intron 2 of 6) 4710 ENSMUSG00000039814.15 ENSMUSG00000039814 ENSMUST00000143913 Xkr5 protein_coding Interval_53 GL456212.1 89649 91052 + 0 NA NA NA NA NA Interval_170861 chr9 111289504 111290836 + 0 NA Intergenic Intergenic 16068 ENSMUSG00000046785.8 ENSMUSG00000046785 ENSMUST00000200053 Epm2aip1 protein_coding Interval_100269 chr2 168080338 168081592 + 0 NA promoter-TSS (ENSMUSG00000044641.7) protein_coding-promoter-TSS (ENSMUSG00000044641.7) -39 ENSMUSG00000044641.7 ENSMUSG00000044641 ENSMUST00000052125 Pard6b protein_coding Interval_74444 chr17 50673729 50673934 + 0 NA intron (ENSMUSG00000038910.7, intron 5 of 5) protein_coding-intron (ENSMUSG00000038910.7, intron 5 of 5) -24857 ENSMUSG00000044645.8 ENSMUSG00000044645 ENSMUST00000061681 Gm7334 processed_pseudogene Interval_53679 chr14 60818076 60818555 + 0 NA intron (ENSMUSG00000021993.10, intron 10 of 15) protein_coding-intron (ENSMUSG00000021993.10, intron 10 of 18) 33733 ENSMUSG00000021993.10 ENSMUSG00000021993 ENSMUST00000223709 Mipep protein_coding Interval_136192 chr6 51927000 51928253 + 0 NA intron (ENSMUSG00000059182.7, intron 4 of 12) protein_coding-intron (ENSMUSG00000059182.7, intron 4 of 12) -55697 ENSMUSG00000059182.7 ENSMUSG00000059182 ENSMUST00000203313 Skap2 protein_coding Interval_148406 chr7 81074311 81076048 + 0 NA intron (ENSMUSG00000038763.12, intron 3 of 13) protein_coding-intron (ENSMUSG00000038763.12, intron 3 of 13) 16066 ENSMUSG00000085194.1 ENSMUSG00000085194 ENSMUST00000148597 Platr32 sense_intronic Interval_164129 chr9 31743699 31745158 + 0 NA Intergenic Intergenic -38556 ENSMUSG00000110778.1 ENSMUSG00000110778 ENSMUST00000217443 Gm8171 processed_pseudogene Interval_134812 chr6 31771884 31772385 + 0 NA intron (ENSMUSG00000086804.8, intron 2 of 3) lincRNA-intron (ENSMUSG00000086804.8, intron 2 of 4) -14541 ENSMUSG00000087379.1 ENSMUSG00000087379 ENSMUST00000153328 Gm13849 lincRNA Interval_150358 chr7 109880735 109881045 + 0 NA Intergenic Intergenic 16666 ENSMUSG00000035901.14 ENSMUSG00000035901 ENSMUST00000151923 Dennd5a protein_coding Interval_146245 chr7 44943035 44943446 + 0 NA promoter-TSS (ENSMUSG00000059891.14) protein_coding-promoter-TSS (ENSMUSG00000059891.14) -11074 ENSMUSG00000059891.14 ENSMUSG00000059891 ENSMUST00000208475 Tsks protein_coding Interval_7822 chr1 133911311 133911914 + 0 NA exon (ENSMUSG00000041577.5, exon 3 of 3) protein_coding-exon (ENSMUSG00000041577.5, exon 3 of 3) -3613 ENSMUSG00000010311.15 ENSMUSG00000010311 ENSMUST00000126123 Optc protein_coding Interval_2947 chr1 51477478 51478881 + 0 NA promoter-TSS (ENSMUSG00000026107.11) protein_coding-promoter-TSS (ENSMUSG00000026107.11) 220 ENSMUSG00000026107.11 ENSMUSG00000026107 ENSMUST00000188303 Nabp1 protein_coding Interval_148699 chr7 84254315 84255038 + 0 NA intron (ENSMUSG00000015709.9, intron 18 of 19) protein_coding-intron (ENSMUSG00000015709.9, intron 17 of 18) -21757 ENSMUSG00000109091.1 ENSMUSG00000109091 ENSMUST00000207963 Gm44827 lincRNA Interval_22930 chr11 17525037 17525932 + 0 NA Intergenic Intergenic -22802 ENSMUSG00000087833.1 ENSMUSG00000087833 ENSMUST00000157208 Gm23959 misc_RNA Interval_162928 chr9 13491904 13492337 + 0 NA intron (ENSMUSG00000031925.17, intron 1 of 4) protein_coding-intron (ENSMUSG00000031925.17, intron 1 of 4) -27816 ENSMUSG00000111223.1 ENSMUSG00000111223 ENSMUST00000213741 Gm47089 TEC Interval_104447 chr3 65764719 65764997 + 0 NA intron (ENSMUSG00000074579.14, intron 6 of 12) protein_coding-intron (ENSMUSG00000074579.14, intron 6 of 6) 6759 ENSMUSG00000065330.1 ENSMUSG00000065330 ENSMUST00000083396 Gm25755 snRNA Interval_150719 chr7 113765768 113767465 + 0 NA intron (ENSMUSG00000038156.16, intron 1 of 5) protein_coding-intron (ENSMUSG00000038156.16, intron 1 of 15) 442 ENSMUSG00000038156.16 ENSMUSG00000038156 ENSMUST00000084696 Spon1 protein_coding Interval_90162 chr2 28654157 28654604 + 0 NA intron (ENSMUSG00000026812.16, intron 2 of 10) protein_coding-intron (ENSMUSG00000026812.16, intron 2 of 22) 13152 ENSMUSG00000026812.16 ENSMUSG00000026812 ENSMUST00000139642 Tsc1 protein_coding Interval_110647 chr4 5693304 5694954 + 0 NA intron (ENSMUSG00000049119.14, intron 2 of 3) protein_coding-intron (ENSMUSG00000049119.14, intron 1 of 2) -6327 ENSMUSG00000077392.1 ENSMUSG00000077392 ENSMUST00000104204 Gm24337 snoRNA Interval_18847 chr10 91241420 91243293 + 0 NA Intergenic Intergenic 14170 ENSMUSG00000110870.1 ENSMUSG00000110870 ENSMUST00000217534 Gm47081 processed_pseudogene Interval_153794 chr8 8659688 8662106 + 0 NA promoter-TSS (ENSMUSG00000040467.1) lincRNA-promoter-TSS (ENSMUSG00000040467.1) 342 ENSMUSG00000001300.16 ENSMUSG00000001300 ENSMUST00000209169 Efnb2 protein_coding Interval_102514 chr3 27413790 27414762 + 0 NA Intergenic Intergenic 42925 ENSMUSG00000051136.1 ENSMUSG00000051136 ENSMUST00000057186 Ghsr protein_coding Interval_168855 chr9 88094665 88095230 + 0 NA Intergenic Intergenic 27818 ENSMUSG00000099886.1 ENSMUSG00000099886 ENSMUST00000187464 Gm2324 processed_pseudogene Interval_94506 chr2 91735063 91736045 + 0 NA intron (ENSMUSG00000040506.16, intron 1 of 8) protein_coding-intron (ENSMUSG00000040506.16, intron 1 of 17) 5372 ENSMUSG00000040506.16 ENSMUSG00000040506 ENSMUST00000142224 Ambra1 protein_coding Interval_84891 chr19 18639507 18640082 + 0 NA intron (ENSMUSG00000037847.14, intron 3 of 8) protein_coding-intron (ENSMUSG00000037847.14, intron 3 of 8) 7844 ENSMUSG00000037847.14 ENSMUSG00000037847 ENSMUST00000159572 Nmrk1 protein_coding Interval_107986 chr3 118991539 118992004 + 0 NA intron (ENSMUSG00000033308.16, intron 12 of 22) protein_coding-intron (ENSMUSG00000033308.16, intron 12 of 22) 123527 ENSMUSG00000106542.1 ENSMUSG00000106542 ENSMUST00000197510 Gm43410 TEC Interval_77882 chr18 5011205 5012664 + 0 NA intron (ENSMUSG00000024236.18, intron 1 of 37) protein_coding-intron (ENSMUSG00000024236.18, intron 1 of 37) -23232 ENSMUSG00000024236.18 ENSMUSG00000024236 ENSMUST00000129543 Svil protein_coding Interval_78330 chr18 12018726 12018897 + 0 NA intron (ENSMUSG00000049411.15, intron 14 of 15) protein_coding-intron (ENSMUSG00000049411.15, intron 11 of 12) 102669 ENSMUSG00000049411.15 ENSMUSG00000049411 ENSMUST00000234833 Tmem241 protein_coding Interval_90774 chr2 32534549 32537521 + 0 NA exon (ENSMUSG00000039157.12, exon 1 of 11) protein_coding-exon (ENSMUSG00000039157.12, exon 1 of 11) -4155 ENSMUSG00000039157.12 ENSMUSG00000039157 ENSMUST00000147723 Fam102a protein_coding Interval_119571 chr4 138434189 138435307 + 0 NA promoter-TSS (ENSMUSG00000041241.12) protein_coding-promoter-TSS (ENSMUSG00000041241.12) 25 ENSMUSG00000041241.12 ENSMUSG00000041241 ENSMUST00000105815 Mul1 protein_coding Interval_60870 chr15 77270704 77270966 + 0 NA intron (ENSMUSG00000033565.18, intron 1 of 13) protein_coding-intron (ENSMUSG00000033565.18, intron 1 of 12) -28284 ENSMUSG00000089242.1 ENSMUSG00000089242 ENSMUST00000158617 Gm24056 snRNA Interval_49566 chr13 112998496 112999226 + 0 NA exon (ENSMUSG00000074651.3, exon 7 of 7) protein_coding-exon (ENSMUSG00000074651.3, exon 7 of 7) 5016 ENSMUSG00000074651.3 ENSMUSG00000074651 ENSMUST00000092089 Mcidas protein_coding Interval_139005 chr6 94169626 94170807 + 0 NA intron (ENSMUSG00000045095.16, intron 2 of 2) protein_coding-intron (ENSMUSG00000045095.16, intron 1 of 21) 153818 ENSMUSG00000107545.1 ENSMUSG00000107545 ENSMUST00000204466 Gm44307 processed_pseudogene Interval_99970 chr2 166179633 166179993 + 0 NA Intergenic Intergenic -9884 ENSMUSG00000088926.1 ENSMUSG00000088926 ENSMUST00000158301 Gm22687 rRNA Interval_109935 chr3 151942224 151942431 + 0 NA Intergenic Intergenic -15918 ENSMUSG00000087997.1 ENSMUSG00000087997 ENSMUST00000157372 Gm25056 snRNA Interval_148804 chr7 88129682 88130947 + 0 NA exon (ENSMUSG00000049583.15, exon 8 of 8) protein_coding-exon (ENSMUSG00000049583.15, exon 8 of 8) 11156 ENSMUSG00000108993.1 ENSMUSG00000108993 ENSMUST00000207127 Gm44846 TEC Interval_108537 chr3 128247773 128247946 + 0 NA Intergenic Intergenic 33232 ENSMUSG00000106119.1 ENSMUSG00000106119 ENSMUST00000197882 Gm43656 processed_pseudogene Interval_107796 chr3 115183103 115184002 + 0 NA Intergenic Intergenic -11503 ENSMUSG00000106510.1 ENSMUSG00000106510 ENSMUST00000198707 Gm18429 processed_pseudogene Interval_61588 chr15 82808803 82810264 + 0 NA exon (ENSMUSG00000041852.15, exon 5 of 5) protein_coding-exon (ENSMUSG00000041852.15, exon 5 of 5) -5569 ENSMUSG00000116280.1 ENSMUSG00000116280 ENSMUST00000229945 Gm49435 unprocessed_pseudogene Interval_62311 chr15 89730020 89730969 + 0 NA Intergenic Intergenic 6023 ENSMUSG00000116149.1 ENSMUSG00000116149 ENSMUST00000229546 Gm18476 processed_pseudogene Interval_21319 chr10 127937699 127937906 + 0 NA Intergenic Intergenic 10758 ENSMUSG00000090036.1 ENSMUSG00000090036 ENSMUST00000161584 Gm15900 processed_pseudogene Interval_60083 chr15 64764461 64765335 + 0 NA intron (ENSMUSG00000022376.8, intron 8 of 16) protein_coding-intron (ENSMUSG00000022376.8, intron 8 of 17) -52796 ENSMUSG00000094296.1 ENSMUSG00000094296 ENSMUST00000180105 Gm21798 protein_coding Interval_84631 chr19 14538078 14538293 + 0 NA intron (ENSMUSG00000024642.17, intron 6 of 19) protein_coding-intron (ENSMUSG00000024642.17, intron 6 of 19) 57354 ENSMUSG00000024642.17 ENSMUSG00000024642 ENSMUST00000235975 Tle4 protein_coding Interval_109810 chr3 147834120 147834474 + 0 NA Intergenic Intergenic -198650 ENSMUSG00000103349.1 ENSMUSG00000103349 ENSMUST00000195819 Gm36888 lincRNA Interval_10142 chr1 166047695 166049482 + 0 NA Intergenic Intergenic -4897 ENSMUSG00000102890.1 ENSMUSG00000102890 ENSMUST00000195801 Gm7626 processed_pseudogene Interval_107455 chr3 107828345 107828680 + 0 NA intron (ENSMUSG00000106426.1, intron 2 of 3) lincRNA-intron (ENSMUSG00000106426.1, intron 2 of 3) 5027 ENSMUSG00000106426.1 ENSMUSG00000106426 ENSMUST00000198171 Gm36211 lincRNA Interval_34896 chr12 13076735 13077110 + 0 NA Intergenic Intergenic -22193 ENSMUSG00000113928.1 ENSMUSG00000113928 ENSMUST00000220969 Gm48209 lincRNA Interval_4256 chr1 72207279 72207597 + 0 NA intron (ENSMUSG00000039395.8, intron 1 of 4) protein_coding-intron (ENSMUSG00000039395.8, intron 1 of 4) 4869 ENSMUSG00000039395.8 ENSMUSG00000039395 ENSMUST00000048860 Mreg protein_coding Interval_45902 chr13 58992784 58993248 + 0 NA intron (ENSMUSG00000055254.15, intron 13 of 17) protein_coding-intron (ENSMUSG00000055254.15, intron 13 of 17) 85280 ENSMUSG00000114896.1 ENSMUSG00000114896 ENSMUST00000224384 Gm34245 TEC Interval_88700 chr2 9867782 9868180 + 0 NA intron (ENSMUSG00000015619.10, intron 2 of 2) protein_coding-intron (ENSMUSG00000015619.10, intron 4 of 5) 7418 ENSMUSG00000015619.10 ENSMUSG00000015619 ENSMUST00000142305 Gata3 protein_coding Interval_58438 chr15 34524612 34525356 + 0 NA intron (ENSMUSG00000022325.14, intron 2 of 3) protein_coding-intron (ENSMUSG00000022325.14, intron 14 of 16) -6576 ENSMUSG00000115005.1 ENSMUSG00000115005 ENSMUST00000226504 Gm49195 processed_pseudogene Interval_157420 chr8 70251501 70252103 + 0 NA promoter-TSS (ENSMUSG00000036054.15) protein_coding-promoter-TSS (ENSMUSG00000036054.15) 17576 ENSMUSG00000036054.15 ENSMUSG00000036054 ENSMUST00000129402 Sugp2 protein_coding Interval_13454 chr10 18393465 18393964 + 0 NA intron (ENSMUSG00000039835.16, intron 1 of 4) protein_coding-intron (ENSMUSG00000039835.16, intron 1 of 4) -56473 ENSMUSG00000111313.1 ENSMUSG00000111313 ENSMUST00000213578 Gm18942 processed_pseudogene Interval_59519 chr15 54925006 54925184 + 0 NA intron (ENSMUSG00000022425.16, intron 1 of 2) protein_coding-intron (ENSMUSG00000022425.16, intron 1 of 2) -26975 ENSMUSG00000097286.2 ENSMUSG00000097286 ENSMUST00000181704 Gm26684 bidirectional_promoter_lncRNA Interval_39803 chr12 98585112 98585743 + 0 NA exon (ENSMUSG00000113849.1, exon 1 of 1) TEC-exon (ENSMUSG00000113849.1, exon 1 of 1) 549 ENSMUSG00000113849.1 ENSMUSG00000113849 ENSMUST00000221302 Gm47346 TEC Interval_59625 chr15 56694670 56696123 + 0 NA promoter-TSS (ENSMUSG00000022367.7) protein_coding-promoter-TSS (ENSMUSG00000022367.7) -857 ENSMUSG00000022367.7 ENSMUSG00000022367 ENSMUST00000050544 Has2 protein_coding Interval_168483 chr9 82244886 82245303 + 0 NA Intergenic Intergenic -2754 ENSMUSG00000077415.1 ENSMUSG00000077415 ENSMUST00000104227 Gm23748 snoRNA Interval_93569 chr2 74506447 74507053 + 0 NA Intergenic Intergenic 48246 ENSMUSG00000009207.15 ENSMUSG00000009207 ENSMUST00000134168 Lnpk protein_coding Interval_38534 chr12 79941925 79942135 + 0 NA Intergenic Intergenic -2391 ENSMUSG00000112646.1 ENSMUSG00000112646 ENSMUST00000217787 Gm5654 processed_pseudogene Interval_39578 chr12 91023138 91023362 + 0 NA intron (ENSMUSG00000061533.16, intron 8 of 12) protein_coding-intron (ENSMUSG00000061533.16, intron 3 of 6) 6828 ENSMUSG00000061533.16 ENSMUSG00000061533 ENSMUST00000138935 Cep128 protein_coding Interval_31106 chr11 98165553 98166334 + 0 NA intron (ENSMUSG00000018160.15, intron 13 of 16) protein_coding-intron (ENSMUSG00000018160.15, intron 13 of 16) -4921 ENSMUSG00000018160.15 ENSMUSG00000018160 ENSMUST00000129557 Med1 protein_coding Interval_155702 chr8 36262922 36263169 + 0 NA Intergenic Intergenic -13529 ENSMUSG00000039633.7 ENSMUSG00000039633 ENSMUST00000065297 Lonrf1 protein_coding Interval_88990 chr2 14054892 14056467 + 0 NA intron (ENSMUSG00000063275.15, intron 1 of 7) protein_coding-intron (ENSMUSG00000063275.15, intron 2 of 7) 357 ENSMUSG00000063275.15 ENSMUSG00000063275 ENSMUST00000074854 Hacd1 protein_coding Interval_29444 chr11 84048884 84049187 + 0 NA TTS (ENSMUSG00000018648.15) protein_coding-TTS (ENSMUSG00000018648.15) 19544 ENSMUSG00000018648.15 ENSMUSG00000018648 ENSMUST00000138208 Dusp14 protein_coding Interval_151268 chr7 120552579 120553235 + 0 NA promoter-TSS (ENSMUSG00000109578.1) transcribed_unprocessed_pseudogene-promoter-TSS (ENSMUSG00000109578.1) -249 ENSMUSG00000109578.1 ENSMUSG00000109578 ENSMUST00000207306 Gm16475 transcribed_unprocessed_pseudogene Interval_5730 chr1 91308604 91308934 + 0 NA TTS (ENSMUSG00000026307.12) protein_coding-TTS (ENSMUSG00000026307.12) 10400 ENSMUSG00000026307.12 ENSMUSG00000026307 ENSMUST00000137074 Scly protein_coding Interval_149520 chr7 99315216 99315395 + 0 NA intron (ENSMUSG00000055407.14, intron 1 of 3) protein_coding-intron (ENSMUSG00000055407.14, intron 1 of 3) -5895 ENSMUSG00000109460.1 ENSMUSG00000109460 ENSMUST00000129058 Gm45591 sense_intronic Interval_53459 chr14 57664351 57666175 + 0 NA promoter-TSS (ENSMUSG00000021952.16) protein_coding-promoter-TSS (ENSMUSG00000021952.16) 167 ENSMUSG00000021952.16 ENSMUSG00000021952 ENSMUST00000173638 Xpo4 protein_coding Interval_151804 chr7 126765489 126766820 + 0 NA promoter-TSS (ENSMUSG00000030703.8) protein_coding-promoter-TSS (ENSMUSG00000030703.8) -1996 ENSMUSG00000030703.8 ENSMUSG00000030703 ENSMUST00000205910 Gdpd3 protein_coding Interval_125346 chr5 66341574 66342903 + 0 NA intron (ENSMUSG00000029207.16, intron 11 of 17) protein_coding-intron (ENSMUSG00000029207.16, intron 12 of 17) 4987 ENSMUSG00000107155.1 ENSMUSG00000107155 ENSMUST00000201645 Gm43793 TEC Interval_10701 chr1 173348098 173350790 + 0 NA intron (ENSMUSG00000005338.13, intron 1 of 5) protein_coding-intron (ENSMUSG00000005338.13, intron 1 of 9) -15694 ENSMUSG00000037872.5 ENSMUSG00000037872 ENSMUST00000194046 Ackr1 protein_coding Interval_100649 chr2 170752980 170753297 + 0 NA intron (ENSMUSG00000027560.4, intron 1 of 7) protein_coding-intron (ENSMUSG00000027560.4, intron 1 of 7) 21331 ENSMUSG00000027560.4 ENSMUSG00000027560 ENSMUST00000029075 Dok5 protein_coding Interval_52115 chr14 36780196 36781621 + 0 NA Intergenic Intergenic 13483 ENSMUSG00000064777.1 ENSMUSG00000064777 ENSMUST00000082843 Gm25204 snRNA Interval_153853 chr8 9935201 9936224 + 0 NA Intergenic Intergenic -16249 ENSMUSG00000095279.2 ENSMUSG00000095279 ENSMUST00000179462 Gm10067 lincRNA Interval_1523 chr1 24707493 24707706 + 0 NA TTS (ENSMUSG00000073725.8) protein_coding-TTS (ENSMUSG00000073725.8) 28969 ENSMUSG00000073725.8 ENSMUSG00000073725 ENSMUST00000190195 Lmbrd1 protein_coding Interval_100582 chr2 170257768 170258442 + 0 NA Intergenic Intergenic -26930 ENSMUSG00000084013.1 ENSMUSG00000084013 ENSMUST00000118388 Gm14270 processed_pseudogene Interval_123924 chr5 36581426 36582584 + 0 NA promoter-TSS (ENSMUSG00000029192.17) protein_coding-promoter-TSS (ENSMUSG00000029192.17) 31734 ENSMUSG00000106797.1 ENSMUSG00000106797 ENSMUST00000174019 Gm42936 processed_transcript Interval_37178 chr12 59198952 59199768 + 0 NA Intergenic Intergenic 5076 ENSMUSG00000035329.7 ENSMUSG00000035329 ENSMUST00000161351 Fbxo33 protein_coding Interval_64893 chr16 17024273 17024627 + 0 NA TTS (ENSMUSG00000063358.17) protein_coding-TTS (ENSMUSG00000063358.17) -10888 ENSMUSG00000063358.17 ENSMUSG00000063358 ENSMUST00000232480 Mapk1 protein_coding Interval_34421 chr12 4023741 4024007 + 0 NA intron (ENSMUSG00000020658.10, intron 1 of 2) protein_coding-intron (ENSMUSG00000020658.10, intron 1 of 22) 39209 ENSMUSG00000112517.1 ENSMUSG00000112517 ENSMUST00000220181 Gm48001 antisense Interval_87040 chr19 45748328 45749830 + 0 NA promoter-TSS (ENSMUSG00000087367.1) antisense-promoter-TSS (ENSMUSG00000087367.1) -429 ENSMUSG00000087367.1 ENSMUSG00000087367 ENSMUST00000133963 Gm15491 antisense Interval_27927 chr11 70934459 70935852 + 0 NA exon (ENSMUSG00000020817.16, exon 15 of 18) protein_coding-exon (ENSMUSG00000020817.16, exon 15 of 18) 21758 ENSMUSG00000040667.11 ENSMUSG00000040667 ENSMUST00000145336 Nup88 protein_coding Interval_162514 chr9 3521095 3521622 + 0 NA Intergenic Intergenic -11530 ENSMUSG00000041624.10 ENSMUSG00000041624 ENSMUST00000212705 Gucy1a2 protein_coding Interval_78235 chr18 10531335 10533245 + 0 NA intron (ENSMUSG00000042942.18, intron 5 of 13) protein_coding-intron (ENSMUSG00000042942.18, intron 18 of 32) 19116 ENSMUSG00000084693.1 ENSMUSG00000084693 ENSMUST00000122744 Gm24894 snoRNA Interval_143297 chr7 5007125 5009259 + 0 NA exon (ENSMUSG00000061374.14, exon 3 of 3) protein_coding-exon (ENSMUSG00000061374.14, exon 3 of 3) 5452 ENSMUSG00000061374.14 ENSMUSG00000061374 ENSMUST00000207412 Fiz1 protein_coding Interval_42052 chr13 6899827 6900829 + 0 NA Intergenic Intergenic 25523 ENSMUSG00000113932.1 ENSMUSG00000113932 ENSMUST00000220700 2900024D18Rik TEC Interval_19394 chr10 98934227 98934433 + 0 NA intron (ENSMUSG00000019943.10, intron 1 of 8) protein_coding-intron (ENSMUSG00000019943.10, intron 1 of 20) -56550 ENSMUSG00000019943.10 ENSMUSG00000019943 ENSMUST00000218419 Atp2b1 protein_coding Interval_39553 chr12 90463946 90464204 + 0 NA Intergenic Intergenic -27550 ENSMUSG00000113023.1 ENSMUSG00000113023 ENSMUST00000220911 Gm47686 processed_pseudogene Interval_101142 chr2 178430804 178431336 + 0 NA intron (ENSMUSG00000039155.15, intron 1 of 13) protein_coding-intron (ENSMUSG00000039155.15, intron 1 of 14) 16488 ENSMUSG00000070476.10 ENSMUSG00000070476 ENSMUST00000129003 Fam217b protein_coding Interval_114051 chr4 62757051 62757302 + 0 NA Intergenic Intergenic -29639 ENSMUSG00000086139.1 ENSMUSG00000086139 ENSMUST00000143618 Gm11211 lincRNA Interval_22761 chr11 14943317 14943985 + 0 NA Intergenic Intergenic -105507 ENSMUSG00000084183.1 ENSMUSG00000084183 ENSMUST00000121361 Gm12009 processed_pseudogene Interval_85469 chr19 26822326 26823157 + 0 NA intron (ENSMUSG00000093772.1, intron 1 of 3) antisense-intron (ENSMUSG00000093772.1, intron 1 of 3) 1166 ENSMUSG00000093772.1 ENSMUSG00000093772 ENSMUST00000177048 4931403E22Rik antisense Interval_13673 chr10 20915474 20915928 + 0 NA Intergenic Intergenic -36728 ENSMUSG00000111177.1 ENSMUSG00000111177 ENSMUST00000213102 Rps2-ps3 processed_pseudogene Interval_49744 chr13 114408865 114409361 + 0 NA Intergenic Intergenic -21063 ENSMUSG00000021764.8 ENSMUSG00000021764 ENSMUST00000225978 Ndufs4 protein_coding Interval_10912 chr1 176948876 176949340 + 0 NA intron (ENSMUSG00000026504.17, intron 16 of 16) protein_coding-intron (ENSMUSG00000026504.17, intron 15 of 17) -16397 ENSMUSG00000087082.1 ENSMUSG00000087082 ENSMUST00000150600 Gm15423 antisense Interval_148545 chr7 82313076 82313363 + 0 NA Intergenic Intergenic -29049 ENSMUSG00000109479.1 ENSMUSG00000109479 ENSMUST00000208587 Gm44919 TEC Interval_20690 chr10 120247049 120247735 + 0 NA Intergenic Intergenic 20290 ENSMUSG00000020224.15 ENSMUSG00000020224 ENSMUST00000130198 Llph protein_coding Interval_74227 chr17 47580355 47581863 + 0 NA intron (ENSMUSG00000034165.16, intron 2 of 6) protein_coding-intron (ENSMUSG00000034165.16, intron 2 of 6) -15215 ENSMUSG00000034165.16 ENSMUSG00000034165 ENSMUST00000183206 Ccnd3 protein_coding Interval_136717 chr6 58507800 58508277 + 0 NA intron (ENSMUSG00000107960.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000107960.1, intron 1 of 1) -3301 ENSMUSG00000093588.1 ENSMUSG00000093588 ENSMUST00000175708 Vmn1r-ps23 unprocessed_pseudogene Interval_54555 chr14 70646843 70647743 + 0 NA TTS (ENSMUSG00000047911.6) protein_coding-TTS (ENSMUSG00000047911.6) -5039 ENSMUSG00000022101.6 ENSMUSG00000022101 ENSMUST00000227123 Fgf17 protein_coding Interval_14409 chr10 33083537 33083799 + 0 NA exon (ENSMUSG00000019787.9, exon 1 of 38) protein_coding-exon (ENSMUSG00000019787.9, exon 1 of 38) 3114 ENSMUSG00000019787.9 ENSMUSG00000019787 ENSMUST00000219000 Trdn protein_coding Interval_95348 chr2 106825954 106826998 + 0 NA intron (ENSMUSG00000016386.15, intron 4 of 6) protein_coding-intron (ENSMUSG00000016386.15, intron 4 of 6) 17140 ENSMUSG00000105450.1 ENSMUSG00000105450 ENSMUST00000199948 Gm22813 scaRNA Interval_64706 chr16 14366431 14366990 + 0 NA intron (ENSMUSG00000023088.17, intron 1 of 2) protein_coding-intron (ENSMUSG00000023088.17, intron 1 of 30) 5143 ENSMUSG00000023088.17 ENSMUSG00000023088 ENSMUST00000146032 Abcc1 protein_coding Interval_79315 chr18 30408835 30409102 + 0 NA Intergenic Intergenic 11092 ENSMUSG00000117345.1 ENSMUSG00000117345 ENSMUST00000234753 Gm7926 processed_pseudogene Interval_131370 chr5 136764261 136764537 + 0 NA TTS (ENSMUSG00000004415.15) protein_coding-TTS (ENSMUSG00000004415.15) 66620 ENSMUSG00000005474.9 ENSMUSG00000005474 ENSMUST00000197849 Myl10 protein_coding Interval_86245 chr19 38048698 38049937 + 0 NA Intergenic Intergenic 5211 ENSMUSG00000069554.4 ENSMUSG00000069554 ENSMUST00000092265 I830134H01Rik lincRNA Interval_124122 chr5 38499432 38499811 + 0 NA intron (ENSMUSG00000005107.13, intron 2 of 13) protein_coding-intron (ENSMUSG00000005107.13, intron 1 of 10) -7842 ENSMUSG00000089646.1 ENSMUSG00000089646 ENSMUST00000162135 Gm15796 processed_pseudogene Interval_48581 chr13 100464380 100465735 + 0 NA intron (ENSMUSG00000021639.17, intron 16 of 17) protein_coding-intron (ENSMUSG00000021639.17, intron 16 of 17) -2875 ENSMUSG00000113596.1 ENSMUSG00000113596 ENSMUST00000222510 Gm48452 processed_pseudogene Interval_172108 chrX 7656959 7659681 + 0 NA promoter-TSS (ENSMUSG00000031145.15) protein_coding-promoter-TSS (ENSMUSG00000031145.15) -1062 ENSMUSG00000087644.1 ENSMUSG00000087644 ENSMUST00000145894 Gm14703 antisense Interval_41826 chr12 119981713 119982754 + 0 NA intron (ENSMUSG00000048004.15, intron 1 of 4) protein_coding-intron (ENSMUSG00000048004.15, intron 1 of 3) -18294 ENSMUSG00000098707.1 ENSMUSG00000098707 ENSMUST00000184147 Gm27236 processed_pseudogene Interval_138386 chr6 87787585 87787925 + 0 NA Intergenic Intergenic 2320 ENSMUSG00000030055.16 ENSMUSG00000030055 ENSMUST00000032135 Rab43 protein_coding Interval_134790 chr6 31560034 31561035 + 0 NA intron (ENSMUSG00000025608.9, intron 1 of 7) protein_coding-intron (ENSMUSG00000025608.9, intron 1 of 7) -14433 ENSMUSG00000086732.1 ENSMUSG00000086732 ENSMUST00000150540 Gm6117 lincRNA Interval_114432 chr4 76281297 76282034 + 0 NA intron (ENSMUSG00000028399.18, intron 1 of 30) protein_coding-intron (ENSMUSG00000028399.18, intron 2 of 29) -111489 ENSMUSG00000080780.1 ENSMUSG00000080780 ENSMUST00000120572 Gm11252 processed_pseudogene Interval_25217 chr11 45502751 45502948 + 0 NA Intergenic Intergenic -82065 ENSMUSG00000085476.1 ENSMUSG00000085476 ENSMUST00000123422 Gm12162 lincRNA Interval_26116 chr11 54437816 54438920 + 0 NA exon (ENSMUSG00000035992.15, exon 1 of 18) protein_coding-exon (ENSMUSG00000035992.15, exon 1 of 18) -19794 ENSMUSG00000088437.1 ENSMUSG00000088437 ENSMUST00000157812 Gm24198 snRNA Interval_41134 chr12 111417027 111418322 + 0 NA promoter-TSS (ENSMUSG00000021280.9) protein_coding-promoter-TSS (ENSMUSG00000021280.9) 215 ENSMUSG00000021280.9 ENSMUSG00000021280 ENSMUST00000223369 Exoc3l4 protein_coding Interval_161503 chr8 120786796 120787377 + 0 NA intron (ENSMUSG00000092329.1, intron 1 of 15) protein_coding-intron (ENSMUSG00000092329.1, intron 1 of 15) 50727 ENSMUSG00000041515.10 ENSMUSG00000041515 ENSMUST00000160594 Irf8 protein_coding Interval_69519 chr16 94006794 94007303 + 0 NA intron (ENSMUSG00000047109.13, intron 1 of 2) protein_coding-intron (ENSMUSG00000047109.13, intron 1 of 2) -4393 ENSMUSG00000116947.1 ENSMUSG00000116947 ENSMUST00000231382 2410003I16Rik lincRNA Interval_162064 chr8 124833993 124834284 + 0 NA exon (ENSMUSG00000036913.15, exon 11 of 11) protein_coding-exon (ENSMUSG00000036913.15, exon 11 of 11) 2440 ENSMUSG00000090118.1 ENSMUSG00000090118 ENSMUST00000161868 Gm16163 processed_transcript Interval_104504 chr3 66973334 66974128 + 0 NA TTS (ENSMUSG00000027833.16) protein_coding-TTS (ENSMUSG00000027833.16) 5080 ENSMUSG00000027833.16 ENSMUSG00000027833 ENSMUST00000195261 Shox2 protein_coding Interval_75074 chr17 62961740 62962161 + 0 NA Intergenic Intergenic -80806 ENSMUSG00000048915.12 ENSMUSG00000048915 ENSMUST00000078839 Efna5 protein_coding Interval_111924 chr4 32586720 32588289 + 0 NA Intergenic Intergenic 15256 ENSMUSG00000051056.5 ENSMUSG00000051056 ENSMUST00000056517 Gja10 protein_coding Interval_152476 chr7 133231415 133231775 + 0 NA Intergenic Intergenic 101606 ENSMUSG00000109619.1 ENSMUSG00000109619 ENSMUST00000209700 Gm45672 lincRNA Interval_44605 chr13 46662750 46663818 + 0 NA Intergenic Intergenic -7907 ENSMUSG00000069237.8 ENSMUSG00000069237 ENSMUST00000150376 Fam8a1 protein_coding Interval_65903 chr16 30132097 30132715 + 0 NA Intergenic Intergenic -7053 ENSMUSG00000116887.1 ENSMUSG00000116887 ENSMUST00000231327 Gm6029 processed_pseudogene Interval_54234 chr14 66756723 66758040 + 0 NA intron (ENSMUSG00000045875.13, intron 2 of 2) protein_coding-intron (ENSMUSG00000045875.13, intron 2 of 2) -27127 ENSMUSG00000057913.3 ENSMUSG00000057913 ENSMUST00000225384 Gm10032 lincRNA Interval_63312 chr15 100261883 100262358 + 0 NA TTS (ENSMUSG00000023027.13) protein_coding-TTS (ENSMUSG00000023027.13) -18721 ENSMUSG00000045631.10 ENSMUSG00000045631 ENSMUST00000230901 Tmprss12 protein_coding Interval_139141 chr6 95948783 95949694 + 0 NA Intergenic Intergenic -22309 ENSMUSG00000107856.1 ENSMUSG00000107856 ENSMUST00000203221 Gm7838 processed_pseudogene Interval_86295 chr19 38456939 38457134 + 0 NA Intergenic Intergenic 16166 ENSMUSG00000088940.1 ENSMUSG00000088940 ENSMUST00000158315 Gm24930 misc_RNA Interval_3303 chr1 56098775 56099406 + 0 NA Intergenic Intergenic 80067 ENSMUSG00000100372.1 ENSMUSG00000100372 ENSMUST00000190280 1700003I22Rik lincRNA Interval_34699 chr12 8760944 8761651 + 0 NA Intergenic Intergenic 9884 ENSMUSG00000096940.1 ENSMUSG00000096940 ENSMUST00000181803 Gm4755 bidirectional_promoter_lncRNA Interval_1778 chr1 33738969 33739839 + 0 NA TTS (ENSMUSG00000004768.14) protein_coding-TTS (ENSMUSG00000004768.14) -8603 ENSMUSG00000103072.1 ENSMUSG00000103072 ENSMUST00000195310 Gm37905 TEC Interval_153015 chr7 140881272 140882670 + 0 NA promoter-TSS (ENSMUSG00000025487.15) protein_coding-promoter-TSS (ENSMUSG00000025487.15) 327 ENSMUSG00000025486.17 ENSMUSG00000025486 ENSMUST00000210398 Sirt3 protein_coding Interval_140999 chr6 124211202 124211479 + 0 NA intron (ENSMUSG00000072778.3, intron 3 of 5) protein_coding-intron (ENSMUSG00000072778.3, intron 3 of 5) 20516 ENSMUSG00000072778.3 ENSMUSG00000072778 ENSMUST00000100968 Vmn2r27 protein_coding Interval_101726 chr3 9181434 9182027 + 0 NA Intergenic Intergenic -68872 ENSMUSG00000069114.8 ENSMUSG00000069114 ENSMUST00000155203 Zbtb10 protein_coding Interval_28265 chr11 74779537 74780727 + 0 NA intron (ENSMUSG00000010554.14, intron 2 of 9) protein_coding-intron (ENSMUSG00000010554.14, intron 2 of 10) -23192 ENSMUSG00000010554.14 ENSMUSG00000010554 ENSMUST00000134571 Mettl16 protein_coding Interval_155493 chr8 33899351 33899810 + 0 NA intron (ENSMUSG00000031586.17, intron 1 of 8) protein_coding-intron (ENSMUSG00000031586.17, intron 1 of 7) -13833 ENSMUSG00000098166.1 ENSMUSG00000098166 ENSMUST00000182843 Gm26978 sense_intronic Interval_29660 chr11 85875764 85876992 + 0 NA Intergenic Intergenic -10044 ENSMUSG00000000094.12 ENSMUSG00000000094 ENSMUST00000108045 Tbx4 protein_coding Interval_48701 chr13 101693701 101696386 + 0 NA promoter-TSS (ENSMUSG00000041417.15) protein_coding-promoter-TSS (ENSMUSG00000041417.15) -2700 ENSMUSG00000041417.15 ENSMUSG00000041417 ENSMUST00000189426 Pik3r1 protein_coding Interval_129115 chr5 117496712 117497801 + 0 NA intron (ENSMUSG00000061578.8, intron 1 of 20) protein_coding-intron (ENSMUSG00000061578.8, intron 1 of 3) -23443 ENSMUSG00000107199.1 ENSMUSG00000107199 ENSMUST00000201553 Gm42550 TEC Interval_34924 chr12 13516634 13516861 + 0 NA intron (ENSMUSG00000020576.10, intron 2 of 2) protein_coding-intron (ENSMUSG00000020576.10, intron 45 of 51) -8779 ENSMUSG00000096633.1 ENSMUSG00000096633 ENSMUST00000097247 Gm22170 snRNA Interval_164478 chr9 37383958 37385545 + 0 NA TTS (ENSMUSG00000046240.8) protein_coding-TTS (ENSMUSG00000046240.8) 17115 ENSMUSG00000046240.8 ENSMUSG00000046240 ENSMUST00000215951 Hepacam protein_coding Interval_45772 chr13 57978864 57979152 + 0 NA Intergenic Intergenic 44192 ENSMUSG00000077962.1 ENSMUSG00000077962 ENSMUST00000104769 Mir874 miRNA Interval_66280 chr16 32836077 32836863 + 0 NA exon (ENSMUSG00000035629.19, exon 9 of 19) protein_coding-exon (ENSMUSG00000035629.19, exon 9 of 19) 101 ENSMUSG00000035629.19 ENSMUSG00000035629 ENSMUST00000149621 Rubcn protein_coding Interval_138021 chr6 84311094 84311406 + 0 NA Intergenic Intergenic 85998 ENSMUSG00000107538.1 ENSMUSG00000107538 ENSMUST00000203565 Gm44127 lincRNA Interval_75596 chr17 69180988 69181642 + 0 NA intron (ENSMUSG00000024044.19, intron 1 of 19) protein_coding-intron (ENSMUSG00000024044.19, intron 1 of 21) 54315 ENSMUSG00000024044.19 ENSMUSG00000024044 ENSMUST00000223565 Epb41l3 protein_coding Interval_159758 chr8 101286412 101286679 + 0 NA Intergenic Intergenic 253163 ENSMUSG00000087985.1 ENSMUSG00000087985 ENSMUST00000157360 Gm22223 snoRNA Interval_81881 chr18 65592010 65594199 + 0 NA intron (ENSMUSG00000042439.13, intron 1 of 1) protein_coding-intron (ENSMUSG00000042439.13, intron 2 of 5) -10730 ENSMUSG00000103194.1 ENSMUSG00000103194 ENSMUST00000195369 Gm37643 TEC Interval_122722 chr5 24891348 24891623 + 0 NA intron (ENSMUSG00000028944.14, intron 1 of 9) protein_coding-intron (ENSMUSG00000028944.14, intron 5 of 15) -11084 ENSMUSG00000086446.1 ENSMUSG00000086446 ENSMUST00000134633 Prkag2os1 antisense Interval_78224 chr18 10324798 10325936 + 0 NA intron (ENSMUSG00000042942.18, intron 1 of 8) protein_coding-intron (ENSMUSG00000042942.18, intron 1 of 32) -17547 ENSMUSG00000117363.1 ENSMUSG00000117363 ENSMUST00000234780 Gm50033 TEC Interval_58382 chr15 34036617 34037870 + 0 NA exon (ENSMUSG00000115428.1, exon 1 of 3) lincRNA-exon (ENSMUSG00000115428.1, exon 1 of 3) 537 ENSMUSG00000115428.1 ENSMUSG00000115428 ENSMUST00000228182 Gm41290 lincRNA Interval_86476 chr19 40922905 40923175 + 0 NA Intergenic Intergenic 28335 ENSMUSG00000049164.7 ENSMUSG00000049164 ENSMUST00000235207 Zfp518a protein_coding Interval_61024 chr15 78833728 78834324 + 0 NA Intergenic Intergenic -8598 ENSMUSG00000049521.2 ENSMUSG00000049521 ENSMUST00000059619 Cdc42ep1 protein_coding Interval_86231 chr19 37975449 37976096 + 0 NA intron (ENSMUSG00000048612.16, intron 13 of 53) protein_coding-intron (ENSMUSG00000048612.16, intron 13 of 52) 67627 ENSMUSG00000048612.16 ENSMUSG00000048612 ENSMUST00000226084 Myof protein_coding Interval_157215 chr8 67994855 67995868 + 0 NA intron (ENSMUSG00000030465.19, intron 3 of 16) protein_coding-intron (ENSMUSG00000030465.19, intron 2 of 9) -14979 ENSMUSG00000077545.1 ENSMUSG00000077545 ENSMUST00000104357 Gm22018 snoRNA Interval_13009 chr10 9201159 9201522 + 0 NA Intergenic Intergenic 23411 ENSMUSG00000112543.1 ENSMUSG00000112543 ENSMUST00000218588 Gm48744 TEC Interval_56984 chr14 124735425 124735614 + 0 NA intron (ENSMUSG00000115490.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000115490.1, intron 1 of 1) 7278 ENSMUSG00000115490.1 ENSMUSG00000115490 ENSMUST00000226645 4930404O17Rik lincRNA Interval_52846 chr14 51054392 51054642 + 0 NA Intergenic Intergenic 3144 ENSMUSG00000068407.3 ENSMUSG00000068407 ENSMUST00000227764 Rnase12 protein_coding Interval_172285 chrX 12340564 12340970 + 0 NA exon (ENSMUSG00000087591.7, exon 4 of 4) lincRNA-exon (ENSMUSG00000087591.7, exon 4 of 4) 14229 ENSMUSG00000087591.7 ENSMUSG00000087591 ENSMUST00000137281 Gm14635 lincRNA Interval_150008 chr7 104646962 104647609 + 0 NA promoter-TSS (ENSMUSG00000070421.4) protein_coding-promoter-TSS (ENSMUSG00000070421.4) 20 ENSMUSG00000070421.4 ENSMUSG00000070421 ENSMUST00000089296 Olfr658 protein_coding Interval_45720 chr13 57269370 57270044 + 0 NA Intergenic Intergenic -6971 ENSMUSG00000114411.1 ENSMUSG00000114411 ENSMUST00000224461 Gm48176 processed_pseudogene Interval_92063 chr2 52948625 52948819 + 0 NA intron (ENSMUSG00000036053.17, intron 1 of 26) protein_coding-intron (ENSMUSG00000036053.17, intron 1 of 26) 90862 ENSMUSG00000036053.17 ENSMUSG00000036053 ENSMUST00000050719 Fmnl2 protein_coding Interval_101167 chr2 178728046 178729316 + 0 NA Intergenic Intergenic 268051 ENSMUSG00000039155.15 ENSMUSG00000039155 ENSMUST00000176869 Cdh26 protein_coding Interval_130265 chr5 125286916 125287962 + 0 NA promoter-TSS (ENSMUSG00000037936.15) protein_coding-promoter-TSS (ENSMUSG00000037936.15) -14624 ENSMUSG00000105039.1 ENSMUSG00000105039 ENSMUST00000198586 Gm32585 lincRNA Interval_73874 chr17 45118421 45118622 + 0 NA intron (ENSMUSG00000038954.14, intron 11 of 11) protein_coding-intron (ENSMUSG00000038954.14, intron 11 of 11) -28716 ENSMUSG00000117044.1 ENSMUSG00000117044 ENSMUST00000233532 Gm35097 lincRNA Interval_31067 chr11 97971256 97971458 + 0 NA intron (ENSMUSG00000017417.14, intron 2 of 13) protein_coding-intron (ENSMUSG00000017417.14, intron 2 of 13) 2565 ENSMUSG00000082715.1 ENSMUSG00000082715 ENSMUST00000118176 Gm11633 processed_pseudogene Interval_162394 chr8 127898314 127899099 + 0 NA Intergenic Intergenic 301000 ENSMUSG00000088580.1 ENSMUSG00000088580 ENSMUST00000157955 Gm22968 rRNA Interval_116117 chr4 107877672 107880178 + 0 NA promoter-TSS (ENSMUSG00000028609.6) protein_coding-promoter-TSS (ENSMUSG00000028609.6) -4065 ENSMUSG00000028609.6 ENSMUSG00000028609 ENSMUST00000141376 Magoh protein_coding Interval_168525 chr9 83051023 83052276 + 0 NA Intergenic Intergenic 21739 ENSMUSG00000099188.1 ENSMUSG00000099188 ENSMUST00000184004 Gm27248 processed_pseudogene Interval_88828 chr2 11491290 11491792 + 0 NA TTS (ENSMUSG00000026773.19) protein_coding-TTS (ENSMUSG00000026773.19) -30165 ENSMUSG00000102329.1 ENSMUSG00000102329 ENSMUST00000192087 Gm10851 antisense Interval_39968 chr12 100150012 100150211 + 0 NA intron (ENSMUSG00000021179.8, intron 2 of 4) protein_coding-intron (ENSMUSG00000021179.8, intron 2 of 13) -20339 ENSMUSG00000021179.8 ENSMUSG00000021179 ENSMUST00000221954 Nrde2 protein_coding Interval_129360 chr5 119501450 119502229 + 0 NA Intergenic Intergenic 26115 ENSMUSG00000106938.1 ENSMUSG00000106938 ENSMUST00000201435 Gm31314 lincRNA Interval_24249 chr11 31779897 31780147 + 0 NA Intergenic Intergenic 44502 ENSMUSG00000085772.7 ENSMUSG00000085772 ENSMUST00000126265 D630024D03Rik lincRNA Interval_129939 chr5 123171210 123172247 + 0 NA TTS (ENSMUSG00000029445.13) protein_coding-TTS (ENSMUSG00000029445.13) 10994 ENSMUSG00000029445.13 ENSMUSG00000029445 ENSMUST00000124110 Hpd protein_coding Interval_135473 chr6 39507497 39509174 + 0 NA exon (ENSMUSG00000038456.9, exon 3 of 19) protein_coding-exon (ENSMUSG00000038456.9, exon 3 of 19) -19191 ENSMUSG00000085058.2 ENSMUSG00000085058 ENSMUST00000200951 8030453O22Rik processed_transcript Interval_167373 chr9 67885908 67886155 + 0 NA intron (ENSMUSG00000035284.10, intron 15 of 26) protein_coding-intron (ENSMUSG00000035284.10, intron 15 of 84) 45619 ENSMUSG00000035284.10 ENSMUSG00000035284 ENSMUST00000215524 Vps13c protein_coding Interval_119719 chr4 139460146 139460444 + 0 NA exon (ENSMUSG00000066036.14, exon 78 of 106) protein_coding-exon (ENSMUSG00000066036.14, exon 78 of 106) 79636 ENSMUSG00000066036.14 ENSMUSG00000066036 ENSMUST00000135534 Ubr4 protein_coding Interval_30851 chr11 96871687 96872970 + 0 NA exon (ENSMUSG00000087117.8, exon 2 of 4) processed_transcript-exon (ENSMUSG00000087117.8, exon 2 of 4) 1626 ENSMUSG00000087117.8 ENSMUSG00000087117 ENSMUST00000183967 Gm11523 processed_transcript Interval_130938 chr5 134165281 134165471 + 0 NA exon (ENSMUSG00000061979.8, exon 6 of 11) protein_coding-exon (ENSMUSG00000061979.8, exon 6 of 11) 2884 ENSMUSG00000061979.8 ENSMUSG00000061979 ENSMUST00000156574 Rcc1l protein_coding Interval_43285 chr13 28736334 28736538 + 0 NA intron (ENSMUSG00000085936.7, intron 2 of 5) processed_transcript-intron (ENSMUSG00000085936.7, intron 2 of 5) -25563 ENSMUSG00000099158.1 ENSMUSG00000099158 ENSMUST00000184136 Mir6368 miRNA Interval_114629 chr4 83301617 83303853 + 0 NA intron (ENSMUSG00000038172.14, intron 1 of 19) protein_coding-intron (ENSMUSG00000038172.14, intron 1 of 6) -16825 ENSMUSG00000096801.1 ENSMUSG00000096801 ENSMUST00000083017 Gm23412 snRNA Interval_67782 chr16 57157097 57159564 + 0 NA TTS (ENSMUSG00000022751.9) protein_coding-TTS (ENSMUSG00000022751.9) 1811 ENSMUSG00000022751.9 ENSMUSG00000022751 ENSMUST00000232573 Nit2 protein_coding Interval_160741 chr8 111909611 111910687 + 0 NA exon (ENSMUSG00000031952.5, exon 1 of 2) protein_coding-exon (ENSMUSG00000031952.5, exon 1 of 2) 298 ENSMUSG00000031952.5 ENSMUSG00000031952 ENSMUST00000034430 Chst5 protein_coding Interval_118631 chr4 132899894 132900471 + 0 NA TTS (ENSMUSG00000028878.11) protein_coding-TTS (ENSMUSG00000028878.11) 15419 ENSMUSG00000083816.3 ENSMUSG00000083816 ENSMUST00000117591 Gm13033 processed_pseudogene Interval_115357 chr4 98003210 98004596 + 0 NA intron (ENSMUSG00000028565.18, intron 3 of 7) protein_coding-intron (ENSMUSG00000028565.18, intron 3 of 9) 146358 ENSMUSG00000081096.2 ENSMUSG00000081096 ENSMUST00000120186 Gm12691 transcribed_processed_pseudogene Interval_7544 chr1 132121310 132121641 + 0 NA exon (ENSMUSG00000026437.11, exon 4 of 16) protein_coding-exon (ENSMUSG00000026437.11, exon 4 of 16) -5220 ENSMUSG00000026437.11 ENSMUSG00000026437 ENSMUST00000189733 Cdk18 protein_coding Interval_114223 chr4 68838565 68838769 + 0 NA intron (ENSMUSG00000028351.5, intron 1 of 3) protein_coding-intron (ENSMUSG00000028351.5, intron 3 of 7) 2740 ENSMUSG00000028351.5 ENSMUSG00000028351 ENSMUST00000140572 Brinp1 protein_coding Interval_66612 chr16 35630892 35631343 + 0 NA intron (ENSMUSG00000052133.16, intron 3 of 5) protein_coding-intron (ENSMUSG00000052133.16, intron 3 of 21) -27468 ENSMUSG00000052133.16 ENSMUSG00000052133 ENSMUST00000128966 Sema5b protein_coding Interval_72761 chr17 32011741 32011981 + 0 NA intron (ENSMUSG00000002076.12, intron 1 of 3) protein_coding-intron (ENSMUSG00000002076.12, intron 4 of 7) -16077 ENSMUSG00000088406.1 ENSMUSG00000088406 ENSMUST00000157781 Gm25883 misc_RNA Interval_83294 chr18 83834239 83834598 + 0 NA Intergenic Intergenic -6812 ENSMUSG00000118024.1 ENSMUSG00000118024 ENSMUST00000237374 Gm50419 lincRNA Interval_169468 chr9 97787261 97787676 + 0 NA intron (ENSMUSG00000032452.12, intron 2 of 16) protein_coding-intron (ENSMUSG00000032452.12, intron 2 of 17) 142687 ENSMUSG00000104462.1 ENSMUSG00000104462 ENSMUST00000191863 Gm37661 TEC Interval_36660 chr12 51820887 51821814 + 0 NA intron (ENSMUSG00000035247.16, intron 2 of 42) protein_coding-intron (ENSMUSG00000035247.16, intron 2 of 42) 19271 ENSMUSG00000112746.1 ENSMUSG00000112746 ENSMUST00000218295 Gm19309 processed_pseudogene Interval_36170 chr12 37531149 37531427 + 0 NA intron (ENSMUSG00000050103.18, intron 1 of 1) protein_coding-intron (ENSMUSG00000050103.18, intron 12 of 12) -37991 ENSMUSG00000114007.1 ENSMUSG00000114007 ENSMUST00000221458 Gm48660 processed_pseudogene Interval_13780 chr10 22010027 22010802 + 0 NA Intergenic Intergenic 31742 ENSMUSG00000019970.15 ENSMUSG00000019970 ENSMUST00000135195 Sgk1 protein_coding Interval_147525 chr7 68021895 68022598 + 0 NA intron (ENSMUSG00000005533.10, intron 2 of 20) protein_coding-intron (ENSMUSG00000005533.10, intron 2 of 20) -135661 ENSMUSG00000109152.1 ENSMUSG00000109152 ENSMUST00000208544 Gm44666 processed_pseudogene Interval_126693 chr5 92093525 92094200 + 0 NA Intergenic Intergenic 24421 ENSMUSG00000088949.1 ENSMUSG00000088949 ENSMUST00000158324 Gm24931 rRNA Interval_24393 chr11 32917491 32917864 + 0 NA intron (ENSMUSG00000085402.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000085402.1, intron 1 of 2) 7304 ENSMUSG00000081254.1 ENSMUSG00000081254 ENSMUST00000117772 Gm12112 processed_pseudogene Interval_41565 chr12 116340525 116341072 + 0 NA intron (ENSMUSG00000021171.8, intron 5 of 5) protein_coding-intron (ENSMUSG00000021171.8, intron 8 of 21) -6954 ENSMUSG00000021171.8 ENSMUSG00000021171 ENSMUST00000223150 Esyt2 protein_coding Interval_97556 chr2 139808266 139808727 + 0 NA Intergenic Intergenic -54801 ENSMUSG00000084207.1 ENSMUSG00000084207 ENSMUST00000120773 Gm14070 processed_pseudogene Interval_153701 chr8 4753647 4754239 + 0 NA intron (ENSMUSG00000022322.8, intron 5 of 11) protein_coding-intron (ENSMUSG00000022322.8, intron 5 of 12) -24099 ENSMUSG00000109462.1 ENSMUSG00000109462 ENSMUST00000207083 Gm6334 processed_pseudogene Interval_56674 chr14 121305517 121305935 + 0 NA intron (ENSMUSG00000063410.8, intron 3 of 4) protein_coding-intron (ENSMUSG00000063410.8, intron 3 of 10) 57020 ENSMUSG00000085133.2 ENSMUSG00000085133 ENSMUST00000130256 B930095G15Rik sense_intronic Interval_16356 chr10 62441895 62442726 + 0 NA intron (ENSMUSG00000020079.15, intron 5 of 14) protein_coding-intron (ENSMUSG00000020079.15, intron 5 of 14) -7179 ENSMUSG00000097129.2 ENSMUSG00000097129 ENSMUST00000238598 4930507D05Rik bidirectional_promoter_lncRNA Interval_168472 chr9 81626708 81627533 + 0 NA Intergenic Intergenic -5298 ENSMUSG00000097466.8 ENSMUSG00000097466 ENSMUST00000183781 D430036J16Rik antisense Interval_106230 chr3 94804295 94805238 + 0 NA Intergenic Intergenic -18251 ENSMUSG00000068876.16 ENSMUSG00000068876 ENSMUST00000155485 Cgn protein_coding Interval_63868 chr16 4085167 4087634 + 0 NA TTS (ENSMUSG00000022521.10) protein_coding-TTS (ENSMUSG00000022521.10) 8244 ENSMUSG00000022521.10 ENSMUSG00000022521 ENSMUST00000205685 Crebbp protein_coding Interval_78144 chr18 9307746 9308778 + 0 NA Intergenic Intergenic 3627 ENSMUSG00000117644.1 ENSMUSG00000117644 ENSMUST00000234891 Gm50053 processed_pseudogene Interval_126801 chr5 93026187 93028094 + 0 NA Intergenic Intergenic -14001 ENSMUSG00000089018.1 ENSMUSG00000089018 ENSMUST00000158393 Gm25521 snRNA Interval_160775 chr8 112092388 112093880 + 0 NA Intergenic Intergenic 30629 ENSMUSG00000065700.1 ENSMUSG00000065700 ENSMUST00000083766 Gm22827 snRNA Interval_132801 chr5 147956997 147958243 + 0 NA promoter-TSS (ENSMUSG00000085565.1) lincRNA-promoter-TSS (ENSMUSG00000085565.1) -454 ENSMUSG00000085565.1 ENSMUSG00000085565 ENSMUST00000138406 Gm15721 lincRNA Interval_73561 chr17 40464201 40464817 + 0 NA intron (ENSMUSG00000117017.1, intron 1 of 1) unprocessed_pseudogene-intron (ENSMUSG00000117017.1, intron 1 of 1) 2413 ENSMUSG00000117017.1 ENSMUSG00000117017 ENSMUST00000233217 Gm49844 unprocessed_pseudogene Interval_102677 chr3 29719572 29719948 + 0 NA Intergenic Intergenic -51524 ENSMUSG00000103095.1 ENSMUSG00000103095 ENSMUST00000191640 Gm37557 processed_pseudogene Interval_5307 chr1 87418672 87419142 + 0 NA intron (ENSMUSG00000048000.15, intron 13 of 26) protein_coding-intron (ENSMUSG00000048000.15, intron 15 of 28) -3558 ENSMUSG00000089613.1 ENSMUSG00000089613 ENSMUST00000158988 Gm23504 snRNA Interval_162797 chr9 9193489 9194507 + 0 NA intron (ENSMUSG00000050730.17, intron 1 of 5) protein_coding-intron (ENSMUSG00000050730.17, intron 1 of 22) -42290 ENSMUSG00000085253.3 ENSMUSG00000085253 ENSMUST00000150263 Gm16833 antisense Interval_139598 chr6 102175136 102175537 + 0 NA exon (ENSMUSG00000108092.1, exon 1 of 1) TEC-exon (ENSMUSG00000108092.1, exon 1 of 1) 1776 ENSMUSG00000108092.1 ENSMUSG00000108092 ENSMUST00000204387 Gm44189 TEC Interval_120554 chr4 149332397 149333571 + 0 NA intron (ENSMUSG00000028960.20, intron 27 of 29) protein_coding-intron (ENSMUSG00000028960.20, intron 24 of 26) -1655 ENSMUSG00000085286.1 ENSMUSG00000085286 ENSMUST00000155845 Ube4bos3 antisense Interval_22584 chr11 11941071 11943524 + 0 NA intron (ENSMUSG00000020176.17, intron 10 of 15) protein_coding-intron (ENSMUSG00000020176.17, intron 11 of 16) -28549 ENSMUSG00000087990.2 ENSMUSG00000087990 ENSMUST00000157365 Gm25058 scaRNA Interval_46605 chr13 67519378 67519559 + 0 NA intron (ENSMUSG00000097333.7, intron 3 of 4) protein_coding-intron (ENSMUSG00000097565.1, intron 3 of 5) 6683 ENSMUSG00000097565.1 ENSMUSG00000097565 ENSMUST00000167914 Gm26965 protein_coding Interval_108932 chr3 133467025 133468188 + 0 NA TTS (ENSMUSG00000040943.12) protein_coding-TTS (ENSMUSG00000040943.12) 13076 ENSMUSG00000040943.12 ENSMUSG00000040943 ENSMUST00000195913 Tet2 protein_coding Interval_43942 chr13 38204334 38205440 + 0 NA promoter-TSS (ENSMUSG00000021431.15) protein_coding-promoter-TSS (ENSMUSG00000021431.15) -11049 ENSMUSG00000021431.15 ENSMUSG00000021431 ENSMUST00000223893 Snrnp48 protein_coding Interval_116613 chr4 116059298 116060131 + 0 NA Intergenic Intergenic -6334 ENSMUSG00000028706.14 ENSMUSG00000028706 ENSMUST00000151720 Nsun4 protein_coding Interval_127663 chr5 106417240 106417750 + 0 NA Intergenic Intergenic 40671 ENSMUSG00000034384.11 ENSMUSG00000034384 ENSMUST00000086795 Barhl2 protein_coding Interval_171496 chr9 118821152 118822238 + 0 NA intron (ENSMUSG00000039115.13, intron 1 of 4) protein_coding-intron (ENSMUSG00000039115.13, intron 18 of 27) 16260 ENSMUSG00000066270.3 ENSMUSG00000066270 ENSMUST00000139408 Gm10157 processed_pseudogene Interval_139057 chr6 94647412 94648324 + 0 NA intron (ENSMUSG00000030029.14, intron 3 of 19) protein_coding-intron (ENSMUSG00000030029.14, intron 3 of 19) -41453 ENSMUSG00000098531.1 ENSMUSG00000098531 ENSMUST00000183891 Mir7041 miRNA Interval_25603 chr11 50167048 50167277 + 0 NA intron (ENSMUSG00000036644.15, intron 19 of 21) protein_coding-intron (ENSMUSG00000036644.15, intron 18 of 20) -7282 ENSMUSG00000020381.10 ENSMUSG00000020381 ENSMUST00000123164 Mrnip protein_coding Interval_37796 chr12 72020033 72020473 + 0 NA Intergenic Intergenic 29006 ENSMUSG00000114155.1 ENSMUSG00000114155 ENSMUST00000221336 Gm7986 processed_pseudogene Interval_37776 chr12 71915000 71915986 + 0 NA intron (ENSMUSG00000034574.10, intron 2 of 25) protein_coding-intron (ENSMUSG00000034574.10, intron 2 of 25) -68202 ENSMUSG00000098224.1 ENSMUSG00000098224 ENSMUST00000183329 Gm7985 processed_pseudogene Interval_141383 chr6 127864406 127864606 + 0 NA Intergenic Intergenic 12740 ENSMUSG00000107060.1 ENSMUSG00000107060 ENSMUST00000202448 Gm38901 lincRNA Interval_126394 chr5 87902881 87903084 + 0 NA Intergenic Intergenic -5797 ENSMUSG00000105888.1 ENSMUSG00000105888 ENSMUST00000196993 BC037156 lincRNA Interval_30423 chr11 94276886 94277627 + 0 NA Intergenic Intergenic -4617 ENSMUSG00000094091.3 ENSMUSG00000094091 ENSMUST00000178891 Gm21885 protein_coding Interval_28508 chr11 76398151 76399684 + 0 NA exon (ENSMUSG00000020844.6, exon 1 of 8) protein_coding-exon (ENSMUSG00000020844.6, exon 1 of 8) 151 ENSMUSG00000020844.6 ENSMUSG00000020844 ENSMUST00000131472 Nxn protein_coding Interval_167871 chr9 73183886 73184125 + 0 NA Intergenic Intergenic -8264 ENSMUSG00000066478.3 ENSMUSG00000066478 ENSMUST00000183748 Gm5745 processed_pseudogene Interval_15797 chr10 57001105 57001832 + 0 NA Intergenic Intergenic -19236 ENSMUSG00000112327.1 ENSMUSG00000112327 ENSMUST00000220080 Gm36827 lincRNA Interval_107565 chr3 108512713 108513928 + 0 NA intron (ENSMUSG00000040412.17, intron 1 of 1) protein_coding-intron (ENSMUSG00000040412.17, intron 1 of 20) 15202 ENSMUSG00000080673.1 ENSMUSG00000080673 ENSMUST00000117023 Gm23336 snRNA Interval_27211 chr11 64127110 64127306 + 0 NA Intergenic Intergenic -37365 ENSMUSG00000087622.1 ENSMUSG00000087622 ENSMUST00000145095 Gm12290 lincRNA Interval_155967 chr8 41321188 41321546 + 0 NA intron (ENSMUSG00000031592.10, intron 30 of 38) protein_coding-intron (ENSMUSG00000031592.10, intron 29 of 37) 53406 ENSMUSG00000031591.14 ENSMUSG00000031591 ENSMUST00000143057 Asah1 protein_coding Interval_40977 chr12 110389024 110390287 + 0 NA Intergenic Intergenic -57652 ENSMUSG00000017843.14 ENSMUSG00000017843 ENSMUST00000221074 Ppp2r5c protein_coding Interval_161717 chr8 122306601 122307167 + 0 NA promoter-TSS (ENSMUSG00000049577.15) protein_coding-promoter-TSS (ENSMUSG00000049577.15) -27747 ENSMUSG00000049577.15 ENSMUSG00000049577 ENSMUST00000212315 Zfpm1 protein_coding Interval_150880 chr7 116148938 116149839 + 0 NA intron (ENSMUSG00000045659.18, intron 14 of 18) protein_coding-intron (ENSMUSG00000045659.18, intron 11 of 24) -19863 ENSMUSG00000045659.18 ENSMUSG00000045659 ENSMUST00000205446 Plekha7 protein_coding Interval_165603 chr9 50169722 50169981 + 0 NA Intergenic Intergenic 17194 ENSMUSG00000098012.1 ENSMUSG00000098012 ENSMUST00000182240 Gm8907 processed_pseudogene Interval_106417 chr3 96081145 96081485 + 0 NA Intergenic Intergenic -5556 ENSMUSG00000105995.1 ENSMUSG00000105995 ENSMUST00000199987 Gm43554 processed_pseudogene Interval_50642 chr14 17090007 17090935 + 0 NA Intergenic Intergenic -15090 ENSMUSG00000114296.1 ENSMUSG00000114296 ENSMUST00000225472 Gm18927 processed_pseudogene Interval_10959 chr1 177585327 177585588 + 0 NA Intergenic Intergenic 9065 ENSMUSG00000102885.1 ENSMUSG00000102885 ENSMUST00000194583 Gm37280 lincRNA Interval_77427 chr17 88624572 88627513 + 0 NA promoter-TSS (ENSMUSG00000033855.15) protein_coding-promoter-TSS (ENSMUSG00000033855.15) -513 ENSMUSG00000033855.15 ENSMUSG00000033855 ENSMUST00000112216 Ston1 protein_coding Interval_148675 chr7 84029003 84030316 + 0 NA intron (ENSMUSG00000052353.13, intron 1 of 23) protein_coding-intron (ENSMUSG00000052353.13, intron 1 of 28) 56843 ENSMUSG00000052353.13 ENSMUSG00000052353 ENSMUST00000147578 Cemip protein_coding Interval_142699 chr6 145053264 145053932 + 0 NA intron (ENSMUSG00000030268.17, intron 1 of 10) protein_coding-intron (ENSMUSG00000030268.17, intron 1 of 9) -2791 ENSMUSG00000086643.1 ENSMUSG00000086643 ENSMUST00000141440 Gm15687 antisense Interval_144835 chr7 28533892 28534475 + 0 NA promoter-TSS (ENSMUSG00000108925.1) processed_pseudogene-promoter-TSS (ENSMUSG00000108925.1) -589 ENSMUSG00000108925.1 ENSMUSG00000108925 ENSMUST00000207731 Gm19880 processed_pseudogene Interval_29126 chr11 80483452 80484155 + 0 NA exon (ENSMUSG00000035441.14, exon 22 of 22) protein_coding-exon (ENSMUSG00000035441.14, exon 22 of 22) 6747 ENSMUSG00000048895.13 ENSMUSG00000048895 ENSMUST00000147694 Cdk5r1 protein_coding Interval_155505 chr8 33973584 33974517 + 0 NA Intergenic Intergenic -11864 ENSMUSG00000110663.1 ENSMUSG00000110663 ENSMUST00000212322 Gm39157 lincRNA Interval_118587 chr4 132638683 132639674 + 0 NA promoter-TSS (ENSMUSG00000028886.15) protein_coding-promoter-TSS (ENSMUSG00000028886.15) 132 ENSMUSG00000028886.15 ENSMUSG00000028886 ENSMUST00000130833 Eya3 protein_coding Interval_132036 chr5 142420688 142421041 + 0 NA intron (ENSMUSG00000056493.9, intron 1 of 8) protein_coding-intron (ENSMUSG00000056493.9, intron 1 of 8) 19367 ENSMUSG00000056493.9 ENSMUSG00000056493 ENSMUST00000072837 Foxk1 protein_coding Interval_138264 chr6 86703642 86704130 + 0 NA intron (ENSMUSG00000001157.13, intron 11 of 13) protein_coding-intron (ENSMUSG00000001157.13, intron 11 of 13) 13007 ENSMUSG00000001157.13 ENSMUSG00000001157 ENSMUST00000113679 Gmcl1 protein_coding Interval_138843 chr6 92480703 92481803 + 0 NA exon (ENSMUSG00000030020.13, exon 1 of 8) protein_coding-exon (ENSMUSG00000030020.13, exon 1 of 8) -80524 ENSMUSG00000098130.1 ENSMUSG00000098130 ENSMUST00000182175 Gm17797 processed_pseudogene Interval_153857 chr8 9994346 9995110 + 0 NA Intergenic Intergenic 17021 ENSMUSG00000040396.12 ENSMUSG00000040396 ENSMUST00000048216 Abhd13 protein_coding Interval_109241 chr3 138193443 138194248 + 0 NA intron (ENSMUSG00000012042.9, intron 2 of 10) protein_coding-intron (ENSMUSG00000012042.9, intron 2 of 10) -27626 ENSMUSG00000055301.8 ENSMUSG00000055301 ENSMUST00000196133 Adh7 protein_coding Interval_53527 chr14 58282987 58283157 + 0 NA Intergenic Intergenic -17910 ENSMUSG00000114690.1 ENSMUSG00000114690 ENSMUST00000225434 Gm33321 lincRNA Interval_57275 chr15 8338668 8338863 + 0 NA intron (ENSMUSG00000022141.7, intron 12 of 46) protein_coding-intron (ENSMUSG00000022141.7, intron 12 of 46) 105698 ENSMUSG00000022141.7 ENSMUSG00000022141 ENSMUST00000052965 Nipbl protein_coding Interval_48118 chr13 96373542 96374739 + 0 NA Intergenic Intergenic -2790 ENSMUSG00000113743.1 ENSMUSG00000113743 ENSMUST00000221090 Gm8712 processed_pseudogene Interval_21832 chr11 4636998 4638344 + 0 NA promoter-TSS (ENSMUSG00000020412.16) protein_coding-promoter-TSS (ENSMUSG00000020412.16) -76 ENSMUSG00000020412.16 ENSMUSG00000020412 ENSMUST00000109930 Ascc2 protein_coding Interval_14396 chr10 32889455 32891261 + 0 NA promoter-TSS (ENSMUSG00000069670.8) protein_coding-promoter-TSS (ENSMUSG00000069670.8) 103 ENSMUSG00000069670.8 ENSMUSG00000069670 ENSMUST00000092602 Nkain2 protein_coding Interval_113207 chr4 49891472 49892391 + 0 NA Intergenic Intergenic -144685 ENSMUSG00000083153.1 ENSMUSG00000083153 ENSMUST00000120659 Gm12459 processed_pseudogene Interval_89881 chr2 26194742 26195419 + 0 NA Intergenic Intergenic -3402 ENSMUSG00000085545.1 ENSMUSG00000085545 ENSMUST00000133025 Gm13553 lincRNA Interval_104407 chr3 65379276 65380392 + 0 NA exon (ENSMUSG00000027828.12, exon 5 of 5) protein_coding-exon (ENSMUSG00000027828.12, exon 5 of 5) 3547 ENSMUSG00000027828.12 ENSMUSG00000027828 ENSMUST00000119896 Ssr3 protein_coding Interval_20892 chr10 121781089 121781817 + 0 NA exon (ENSMUSG00000020121.15, exon 22 of 22) protein_coding-exon (ENSMUSG00000020121.15, exon 22 of 22) 30573 ENSMUSG00000053684.8 ENSMUSG00000053684 ENSMUST00000138630 BC048403 protein_coding Interval_28774 chr11 78238319 78239418 + 0 NA intron (ENSMUSG00000002052.6, intron 1 of 36) protein_coding-intron (ENSMUSG00000002052.6, intron 1 of 36) -11553 ENSMUSG00000002064.10 ENSMUSG00000002064 ENSMUST00000133020 Sdf2 protein_coding Interval_142717 chr6 145125659 145125903 + 0 NA intron (ENSMUSG00000030263.13, intron 1 of 12) protein_coding-intron (ENSMUSG00000030263.13, intron 1 of 18) 19616 ENSMUSG00000107420.1 ENSMUSG00000107420 ENSMUST00000204561 Gm43910 TEC Interval_132870 chr5 148414063 148414978 + 0 NA Intergenic Intergenic -14729 ENSMUSG00000041313.14 ENSMUSG00000041313 ENSMUST00000201348 Slc7a1 protein_coding Interval_170353 chr9 107355809 107356203 + 0 NA Intergenic Intergenic -2020 ENSMUSG00000102144.1 ENSMUSG00000102144 ENSMUST00000194547 4930429P21Rik lincRNA Interval_51238 chr14 25473121 25473559 + 0 NA intron (ENSMUSG00000007817.15, intron 1 of 23) protein_coding-intron (ENSMUSG00000007817.15, intron 1 of 23) -6714 ENSMUSG00000114539.1 ENSMUSG00000114539 ENSMUST00000224666 Gm47921 sense_intronic Interval_148193 chr7 79728064 79730221 + 0 NA exon (ENSMUSG00000030546.14, exon 3 of 3) protein_coding-exon (ENSMUSG00000030546.14, exon 3 of 3) 723 ENSMUSG00000030546.14 ENSMUSG00000030546 ENSMUST00000205413 Plin1 protein_coding Interval_20507 chr10 118087759 118088245 + 0 NA Intergenic Intergenic -24515 ENSMUSG00000112470.1 ENSMUSG00000112470 ENSMUST00000218667 5330439M10Rik lincRNA Interval_9134 chr1 153932442 153932895 + 0 NA Intergenic Intergenic -6558 ENSMUSG00000100014.1 ENSMUSG00000100014 ENSMUST00000185385 Gm29290 lincRNA Interval_97081 chr2 131094983 131097105 + 0 NA Intergenic Intergenic -9279 ENSMUSG00000027322.11 ENSMUSG00000027322 ENSMUST00000110226 Siglec1 protein_coding Interval_64244 chr16 9716509 9716952 + 0 NA intron (ENSMUSG00000059003.12, intron 4 of 13) protein_coding-intron (ENSMUSG00000059003.12, intron 2 of 11) 278193 ENSMUSG00000059003.12 ENSMUSG00000059003 ENSMUST00000197242 Grin2a protein_coding Interval_91271 chr2 37261494 37262400 + 0 NA Intergenic Intergenic -5004 ENSMUSG00000049094.7 ENSMUSG00000049094 ENSMUST00000143957 Olfr367-ps transcribed_unprocessed_pseudogene Interval_79387 chr18 31561071 31562136 + 0 NA intron (ENSMUSG00000024259.9, intron 7 of 9) protein_coding-intron (ENSMUSG00000024259.9, intron 7 of 9) -40841 ENSMUSG00000117576.1 ENSMUSG00000117576 ENSMUST00000234311 Gm5241 processed_pseudogene Interval_130277 chr5 125368599 125369433 + 0 NA intron (ENSMUSG00000104932.1, intron 2 of 2) lincRNA-intron (ENSMUSG00000104932.1, intron 2 of 2) 7841 ENSMUSG00000104932.1 ENSMUSG00000104932 ENSMUST00000200649 Gm40323 lincRNA Interval_51876 chr14 33253372 33253730 + 0 NA intron (ENSMUSG00000063506.14, intron 1 of 3) protein_coding-intron (ENSMUSG00000063506.14, intron 2 of 10) -32620 ENSMUSG00000115597.1 ENSMUSG00000115597 ENSMUST00000226933 Gm49030 antisense Interval_135144 chr6 36809325 36810427 + 0 NA intron (ENSMUSG00000029838.11, intron 1 of 3) protein_coding-intron (ENSMUSG00000029838.11, intron 1 of 4) 303 ENSMUSG00000029838.11 ENSMUSG00000029838 ENSMUST00000201321 Ptn protein_coding Interval_117718 chr4 125738199 125739015 + 0 NA Intergenic Intergenic 183810 ENSMUSG00000085562.7 ENSMUSG00000085562 ENSMUST00000144539 2610028E06Rik lincRNA Interval_37933 chr12 73123265 73124513 + 0 NA exon (ENSMUSG00000021103.12, exon 1 of 8) protein_coding-exon (ENSMUSG00000021103.12, exon 1 of 8) 172 ENSMUSG00000021103.12 ENSMUSG00000021103 ENSMUST00000021523 Mnat1 protein_coding Interval_75785 chr17 71353984 71354467 + 0 NA promoter-TSS (ENSMUSG00000024054.14) protein_coding-promoter-TSS (ENSMUSG00000024054.14) -12459 ENSMUSG00000117199.1 ENSMUSG00000117199 ENSMUST00000232737 Gm4566 lincRNA Interval_71361 chr17 22681054 22681273 + 0 NA Intergenic Intergenic -6557 ENSMUSG00000117055.1 ENSMUSG00000117055 ENSMUST00000233199 Gm9805 processed_pseudogene Interval_82401 chr18 73711058 73711496 + 0 NA promoter-TSS (ENSMUSG00000117985.1) lincRNA-promoter-TSS (ENSMUSG00000117985.1) -51 ENSMUSG00000117985.1 ENSMUSG00000117985 ENSMUST00000237598 Gm32548 lincRNA Interval_8501 chr1 140224725 140225752 + 0 NA Intergenic Intergenic -20920 ENSMUSG00000052726.16 ENSMUSG00000052726 ENSMUST00000193606 Kcnt2 protein_coding Interval_85637 chr19 29241465 29242682 + 0 NA Intergenic Intergenic -10368 ENSMUSG00000024789.13 ENSMUSG00000024789 ENSMUST00000238009 Jak2 protein_coding Interval_71114 chr17 18530173 18530697 + 0 NA Intergenic Intergenic 36684 ENSMUSG00000093775.2 ENSMUSG00000093775 ENSMUST00000177016 Vmn2r-ps114 unprocessed_pseudogene Interval_135480 chr6 39548552 39549237 + 0 NA intron (ENSMUSG00000038456.9, intron 1 of 5) protein_coding-intron (ENSMUSG00000038456.9, intron 1 of 18) 21368 ENSMUSG00000085058.2 ENSMUSG00000085058 ENSMUST00000200951 8030453O22Rik processed_transcript Interval_6483 chr1 111654951 111655220 + 0 NA Intergenic Intergenic 152690 ENSMUSG00000100555.1 ENSMUSG00000100555 ENSMUST00000186797 Gm8173 processed_pseudogene Interval_13208 chr10 13060654 13061896 + 0 NA intron (ENSMUSG00000019817.18, intron 1 of 7) protein_coding-intron (ENSMUSG00000019817.18, intron 1 of 7) 771 ENSMUSG00000019817.18 ENSMUSG00000019817 ENSMUST00000145103 Plagl1 protein_coding Interval_42782 chr13 19403978 19404184 + 0 NA Intergenic Intergenic -8299 ENSMUSG00000003062.13 ENSMUSG00000003062 ENSMUST00000199924 Stard3nl protein_coding Interval_166047 chr9 56052373 56054362 + 0 NA TTS (ENSMUSG00000032320.7) protein_coding-TTS (ENSMUSG00000032320.7) 11497 ENSMUSG00000032320.7 ENSMUSG00000032320 ENSMUST00000144869 Rcn2 protein_coding Interval_2842 chr1 46235097 46235442 + 0 NA promoter-TSS (ENSMUSG00000041144.12) protein_coding-promoter-TSS (ENSMUSG00000041144.12) -138928 ENSMUSG00000096047.1 ENSMUSG00000096047 ENSMUST00000093689 n-R5s211 rRNA Interval_92361 chr2 59266244 59266812 + 0 NA intron (ENSMUSG00000026991.20, intron 3 of 3) protein_coding-intron (ENSMUSG00000026991.20, intron 3 of 21) 104601 ENSMUSG00000026991.20 ENSMUSG00000026991 ENSMUST00000124127 Pkp4 protein_coding Interval_138305 chr6 87055889 87056637 + 0 NA TTS (ENSMUSG00000029992.14) protein_coding-TTS (ENSMUSG00000029992.14) 13413 ENSMUSG00000029992.14 ENSMUSG00000029992 ENSMUST00000146410 Gfpt1 protein_coding Interval_134919 chr6 33609176 33609360 + 0 NA intron (ENSMUSG00000029763.17, intron 10 of 12) protein_coding-intron (ENSMUSG00000029763.17, intron 10 of 17) 82886 ENSMUSG00000107103.1 ENSMUSG00000107103 ENSMUST00000202529 Gm43164 TEC Interval_21643 chr11 3402384 3403761 + 0 NA intron (ENSMUSG00000020451.17, intron 1 of 1) protein_coding-intron (ENSMUSG00000020451.17, intron 1 of 15) -48161 ENSMUSG00000087055.1 ENSMUSG00000087055 ENSMUST00000142322 Gm11948 sense_intronic Interval_144401 chr7 24944187 24944861 + 0 NA promoter-TSS (ENSMUSG00000108367.2) protein_coding-promoter-TSS (ENSMUSG00000108367.2) -30 ENSMUSG00000108367.2 ENSMUSG00000108367 ENSMUST00000206705 Erfl protein_coding Interval_145311 chr7 32264097 32264687 + 0 NA Intergenic Intergenic 41552 ENSMUSG00000101638.1 ENSMUSG00000101638 ENSMUST00000186031 Scgb1b11 protein_coding Interval_117682 chr4 125522704 125523180 + 0 NA intron (ENSMUSG00000001985.9, intron 1 of 15) protein_coding-intron (ENSMUSG00000001985.9, intron 1 of 15) 18193 ENSMUSG00000094403.1 ENSMUSG00000094403 ENSMUST00000102081 Mir692-2 miRNA Interval_99003 chr2 156571406 156571623 + 0 NA promoter-TSS (ENSMUSG00000055494.5) lincRNA-promoter-TSS (ENSMUSG00000055494.5) -278 ENSMUSG00000055494.5 ENSMUSG00000055494 ENSMUST00000144818 Gm14168 lincRNA Interval_4136 chr1 70208582 70208865 + 0 NA intron (ENSMUSG00000053153.14, intron 2 of 4) protein_coding-intron (ENSMUSG00000053153.14, intron 11 of 16) 104188 ENSMUSG00000103052.1 ENSMUSG00000103052 ENSMUST00000194431 Gm38272 TEC Interval_86899 chr19 44716589 44717519 + 0 NA Intergenic Intergenic -21594 ENSMUSG00000097683.2 ENSMUSG00000097683 ENSMUST00000181365 Gm26644 lincRNA Interval_67034 chr16 41692314 41692678 + 0 NA intron (ENSMUSG00000061080.11, intron 3 of 8) protein_coding-intron (ENSMUSG00000061080.11, intron 1 of 5) -261404 ENSMUSG00000101463.1 ENSMUSG00000101463 ENSMUST00000186327 Gm28750 antisense Interval_16959 chr10 70143870 70144659 + 0 NA intron (ENSMUSG00000048701.13, intron 2 of 8) protein_coding-intron (ENSMUSG00000048701.13, intron 2 of 8) -30747 ENSMUSG00000048701.13 ENSMUSG00000048701 ENSMUST00000135607 Ccdc6 protein_coding Interval_46904 chr13 73310247 73311171 + 0 NA Intergenic Intergenic -7135 ENSMUSG00000066407.3 ENSMUSG00000066407 ENSMUST00000085163 Gm10263 processed_pseudogene Interval_60617 chr15 75714795 75715372 + 0 NA TTS (ENSMUSG00000022580.13) protein_coding-TTS (ENSMUSG00000022580.13) 4344 ENSMUSG00000022580.13 ENSMUSG00000022580 ENSMUST00000229670 Rhpn1 protein_coding Interval_17512 chr10 77417095 77418780 + 0 NA promoter-TSS (ENSMUSG00000020262.15) protein_coding-promoter-TSS (ENSMUSG00000020262.15) 280 ENSMUSG00000020262.15 ENSMUSG00000020262 ENSMUST00000155117 Adarb1 protein_coding Interval_78757 chr18 20455466 20455723 + 0 NA intron (ENSMUSG00000001804.9, intron 8 of 15) protein_coding-intron (ENSMUSG00000001804.9, intron 8 of 15) 19419 ENSMUSG00000001804.9 ENSMUSG00000001804 ENSMUST00000019426 Dsg4 protein_coding Interval_33985 chr11 119848688 119849162 + 0 NA intron (ENSMUSG00000025583.15, intron 15 of 32) protein_coding-intron (ENSMUSG00000025583.15, intron 16 of 33) -7384 ENSMUSG00000025583.15 ENSMUSG00000025583 ENSMUST00000131217 Rptor protein_coding Interval_70550 chr17 11918104 11919040 + 0 NA intron (ENSMUSG00000023826.16, intron 8 of 10) protein_coding-intron (ENSMUSG00000023826.16, intron 9 of 11) -186227 ENSMUSG00000104466.1 ENSMUSG00000104466 ENSMUST00000194203 Gm10513 TEC Interval_68121 chr16 65450635 65450925 + 0 NA Intergenic Intergenic 18643 ENSMUSG00000095094.1 ENSMUSG00000095094 ENSMUST00000102245 Gm23659 miRNA Interval_99062 chr2 156929838 156930670 + 0 NA TTS (ENSMUSG00000027634.14) protein_coding-TTS (ENSMUSG00000027634.14) -14871 ENSMUSG00000080880.1 ENSMUSG00000080880 ENSMUST00000117381 Gm14278 unprocessed_pseudogene Interval_83677 chr19 3667954 3669350 + 0 NA intron (ENSMUSG00000024913.16, intron 1 of 22) protein_coding-intron (ENSMUSG00000024913.16, intron 1 of 22) 17909 ENSMUSG00000024913.16 ENSMUSG00000024913 ENSMUST00000176867 Lrp5 protein_coding Interval_128481 chr5 113580186 113581132 + 0 NA exon (ENSMUSG00000063430.9, exon 1 of 1) protein_coding-exon (ENSMUSG00000063430.9, exon 1 of 1) 1871 ENSMUSG00000063430.9 ENSMUSG00000063430 ENSMUST00000198673 Wscd2 protein_coding Interval_81633 chr18 62599524 62599741 + 0 NA intron (ENSMUSG00000044176.12, intron 1 of 8) protein_coding-intron (ENSMUSG00000044176.12, intron 1 of 8) -3368 ENSMUSG00000060201.5 ENSMUSG00000060201 ENSMUST00000235321 Spink7 protein_coding Interval_60678 chr15 76117547 76119782 + 0 NA TTS (ENSMUSG00000044361.16) protein_coding-TTS (ENSMUSG00000044361.16) 1531 ENSMUSG00000115388.2 ENSMUSG00000115388 ENSMUST00000226781 Eppk1 protein_coding Interval_79278 chr18 29578761 29579494 + 0 NA Intergenic Intergenic 78469 ENSMUSG00000117626.1 ENSMUSG00000117626 ENSMUST00000234976 Gm7917 processed_pseudogene Interval_140602 chr6 120001662 120002312 + 0 NA intron (ENSMUSG00000045962.16, intron 2 of 25) protein_coding-intron (ENSMUSG00000045962.16, intron 2 of 27) -4011 ENSMUSG00000089936.1 ENSMUSG00000089936 ENSMUST00000160032 Gm16199 processed_pseudogene Interval_146627 chr7 48867719 48868014 + 0 NA exon (ENSMUSG00000046179.17, exon 12 of 13) protein_coding-exon (ENSMUSG00000046179.17, exon 12 of 13) 7385 ENSMUSG00000046179.17 ENSMUSG00000046179 ENSMUST00000136142 E2f8 protein_coding Interval_17601 chr10 78100985 78101475 + 0 NA Intergenic Intergenic 27891 ENSMUSG00000000732.9 ENSMUSG00000000732 ENSMUST00000219633 Icosl protein_coding Interval_47489 chr13 85242461 85242828 + 0 NA intron (ENSMUSG00000021549.14, intron 2 of 2) protein_coding-intron (ENSMUSG00000021549.14, intron 8 of 24) 31322 ENSMUSG00000021548.10 ENSMUSG00000021548 ENSMUST00000166932 Ccnh protein_coding Interval_155616 chr8 35202034 35202277 + 0 NA Intergenic Intergenic -16483 ENSMUSG00000109773.1 ENSMUSG00000109773 ENSMUST00000209645 Gm34474 lincRNA Interval_78636 chr18 16031261 16031685 + 0 NA Intergenic Intergenic -2273 ENSMUSG00000088818.1 ENSMUSG00000088818 ENSMUST00000158193 Gm22389 misc_RNA Interval_38070 chr12 75481965 75483203 + 0 NA intron (ENSMUSG00000021051.10, intron 4 of 12) protein_coding-intron (ENSMUSG00000021051.10, intron 5 of 13) 26161 ENSMUSG00000112254.1 ENSMUSG00000112254 ENSMUST00000218033 Gm47690 TEC Interval_115193 chr4 94139734 94139979 + 0 NA intron (ENSMUSG00000085931.1, intron 4 of 5) lincRNA-intron (ENSMUSG00000085931.1, intron 4 of 5) 41566 ENSMUSG00000077622.1 ENSMUSG00000077622 ENSMUST00000104434 Gm23836 snoRNA Interval_41403 chr12 113402005 113402944 + 0 NA Intergenic Intergenic 5245 ENSMUSG00000102832.1 ENSMUSG00000102832 ENSMUST00000192434 Gm5190 processed_pseudogene Interval_121345 chr4 155129239 155130679 + 0 NA TTS (ENSMUSG00000029049.14) protein_coding-TTS (ENSMUSG00000029049.14) 43370 ENSMUSG00000029049.14 ENSMUSG00000029049 ENSMUST00000129415 Morn1 protein_coding Interval_112032 chr4 33354907 33355227 + 0 NA intron (ENSMUSG00000028274.17, intron 3 of 4) protein_coding-intron (ENSMUSG00000028274.17, intron 8 of 15) 30169 ENSMUSG00000028274.17 ENSMUSG00000028274 ENSMUST00000146870 Rngtt protein_coding Interval_114666 chr4 83595573 83595812 + 0 NA intron (ENSMUSG00000052407.17, intron 7 of 25) protein_coding-intron (ENSMUSG00000052407.17, intron 7 of 25) -1611 ENSMUSG00000098217.1 ENSMUSG00000098217 ENSMUST00000182160 Gm27046 processed_pseudogene Interval_82829 chr18 77262939 77264108 + 0 NA Intergenic Intergenic 7609 ENSMUSG00000025425.18 ENSMUSG00000025425 ENSMUST00000236592 St8sia5 protein_coding Interval_128407 chr5 113163153 113163420 + 0 NA promoter-TSS (ENSMUSG00000051339.10) protein_coding-promoter-TSS (ENSMUSG00000051339.10) 2948 ENSMUSG00000106206.1 ENSMUSG00000106206 ENSMUST00000196549 Gm43094 TEC Interval_884 chr1 12990122 12992868 + 0 NA promoter-TSS (ENSMUSG00000025938.16) protein_coding-promoter-TSS (ENSMUSG00000025938.16) -318 ENSMUSG00000025938.16 ENSMUSG00000025938 ENSMUST00000191566 Slco5a1 protein_coding Interval_48839 chr13 103942032 103942332 + 0 NA Intergenic Intergenic -21887 ENSMUSG00000021709.14 ENSMUSG00000021709 ENSMUST00000189323 Erbin protein_coding Interval_112257 chr4 38969941 38970337 + 0 NA Intergenic Intergenic -114656 ENSMUSG00000085632.1 ENSMUSG00000085632 ENSMUST00000126314 Gm12381 lincRNA Interval_27862 chr11 70477734 70478338 + 0 NA Intergenic Intergenic 18096 ENSMUSG00000040829.14 ENSMUSG00000040829 ENSMUST00000092958 Zmynd15 protein_coding Interval_146514 chr7 46533670 46533906 + 0 NA intron (ENSMUSG00000030839.12, intron 9 of 11) protein_coding-intron (ENSMUSG00000030839.12, intron 9 of 10) -21008 ENSMUSG00000110316.1 ENSMUSG00000110316 ENSMUST00000211086 Gm45311 sense_intronic Interval_173144 chrX 73435333 73435561 + 0 NA promoter-TSS (ENSMUSG00000031372.7) protein_coding-promoter-TSS (ENSMUSG00000031372.7) -103 ENSMUSG00000031372.7 ENSMUSG00000031372 ENSMUST00000033738 Trex2 protein_coding Interval_151958 chr7 127786183 127786550 + 0 NA exon (ENSMUSG00000042308.14, exon 8 of 19) protein_coding-exon (ENSMUSG00000042308.14, exon 8 of 19) 758 ENSMUSG00000108815.1 ENSMUSG00000108815 ENSMUST00000136823 Gm49388 protein_coding Interval_88355 chr2 4344489 4346853 + 0 NA intron (ENSMUSG00000026657.17, intron 1 of 16) protein_coding-intron (ENSMUSG00000026657.17, intron 1 of 22) 29192 ENSMUSG00000102494.1 ENSMUSG00000102494 ENSMUST00000194090 Gm36988 sense_intronic Interval_145845 chr7 40295891 40296165 + 0 NA Intergenic Intergenic 33323 ENSMUSG00000101153.1 ENSMUSG00000101153 ENSMUST00000190294 4933404I11Rik lincRNA Interval_112335 chr4 40640449 40641185 + 0 NA Intergenic Intergenic -37515 ENSMUSG00000081720.1 ENSMUSG00000081720 ENSMUST00000117626 Gm12391 processed_pseudogene Interval_121536 chr5 3300910 3301510 + 0 NA Intergenic Intergenic 30891 ENSMUSG00000106658.1 ENSMUSG00000106658 ENSMUST00000197473 Gm36548 lincRNA Interval_15192 chr10 43270748 43271448 + 0 NA intron (ENSMUSG00000038240.13, intron 1 of 7) protein_coding-intron (ENSMUSG00000038240.13, intron 1 of 7) -48262 ENSMUSG00000089673.1 ENSMUSG00000089673 ENSMUST00000159442 Gm16546 processed_pseudogene Interval_118794 chr4 133745566 133746453 + 0 NA intron (ENSMUSG00000007880.16, intron 1 of 19) protein_coding-intron (ENSMUSG00000007880.16, intron 1 of 19) -25233 ENSMUSG00000007880.16 ENSMUSG00000007880 ENSMUST00000139709 Arid1a protein_coding Interval_84758 chr19 16330652 16331270 + 0 NA intron (ENSMUSG00000024639.5, intron 3 of 6) protein_coding-intron (ENSMUSG00000024639.5, intron 3 of 6) -15957 ENSMUSG00000098718.1 ENSMUSG00000098718 ENSMUST00000184935 Mir496b miRNA Interval_54096 chr14 65261682 65262902 + 0 NA intron (ENSMUSG00000007989.7, intron 1 of 6) protein_coding-intron (ENSMUSG00000007989.7, intron 1 of 6) 171 ENSMUSG00000007989.7 ENSMUSG00000007989 ENSMUST00000127272 Fzd3 protein_coding Interval_161455 chr8 120548339 120549703 + 0 NA intron (ENSMUSG00000031822.20, intron 1 of 15) protein_coding-intron (ENSMUSG00000031822.20, intron 1 of 15) 10325 ENSMUSG00000098280.1 ENSMUSG00000098280 ENSMUST00000184722 Mir7687 miRNA Interval_173810 chrX 104670343 104671966 + 0 NA promoter-TSS (ENSMUSG00000033906.5) protein_coding-promoter-TSS (ENSMUSG00000033906.5) -90 ENSMUSG00000033906.5 ENSMUSG00000033906 ENSMUST00000042070 Zdhhc15 protein_coding Interval_148454 chr7 81342527 81343880 + 0 NA TTS (ENSMUSG00000061787.15) protein_coding-TTS (ENSMUSG00000061787.15) 2024 ENSMUSG00000061787.15 ENSMUSG00000061787 ENSMUST00000138936 Rps17 protein_coding Interval_102966 chr3 33838803 33839433 + 0 NA exon (ENSMUSG00000027676.11, exon 3 of 20) protein_coding-exon (ENSMUSG00000027676.11, exon 3 of 20) -12578 ENSMUSG00000027676.11 ENSMUSG00000027676 ENSMUST00000197230 Ccdc39 protein_coding Interval_7433 chr1 131287095 131287801 + 0 NA exon (ENSMUSG00000026425.15, exon 23 of 23) protein_coding-exon (ENSMUSG00000026425.15, exon 23 of 23) -16904 ENSMUSG00000042349.13 ENSMUSG00000042349 ENSMUST00000159195 Ikbke protein_coding Interval_31749 chr11 102611090 102611954 + 0 NA Intergenic Intergenic 5024 ENSMUSG00000086105.1 ENSMUSG00000086105 ENSMUST00000152172 Gm11636 lincRNA Interval_70584 chr17 12140817 12141661 + 0 NA intron (ENSMUSG00000023827.8, intron 1 of 3) protein_coding-intron (ENSMUSG00000023827.8, intron 1 of 8) 21910 ENSMUSG00000023827.8 ENSMUSG00000023827 ENSMUST00000167905 Agpat4 protein_coding Interval_36073 chr12 35064279 35064770 + 0 NA intron (ENSMUSG00000020590.16, intron 1 of 6) protein_coding-intron (ENSMUSG00000020590.16, intron 1 of 25) 9423 ENSMUSG00000113792.1 ENSMUSG00000113792 ENSMUST00000221891 Gm10933 TEC Interval_168328 chr9 78769786 78770022 + 0 NA Intergenic Intergenic -2372 ENSMUSG00000110809.1 ENSMUSG00000110809 ENSMUST00000215294 Gm46138 processed_pseudogene Interval_110463 chr3 158596739 158597032 + 0 NA Intergenic Intergenic -34751 ENSMUSG00000028176.13 ENSMUSG00000028176 ENSMUST00000198284 Lrrc7 protein_coding Interval_56467 chr14 118950748 118951038 + 0 NA intron (ENSMUSG00000022136.8, intron 1 of 11) protein_coding-intron (ENSMUSG00000022136.8, intron 1 of 11) 12917 ENSMUSG00000022136.8 ENSMUSG00000022136 ENSMUST00000022734 Dnajc3 protein_coding Interval_72144 chr17 28264587 28264905 + 0 NA intron (ENSMUSG00000002250.16, intron 2 of 6) protein_coding-intron (ENSMUSG00000002250.16, intron 2 of 7) 31972 ENSMUSG00000002250.16 ENSMUSG00000002250 ENSMUST00000233383 Ppard protein_coding Interval_128923 chr5 116123211 116124013 + 0 NA promoter-TSS (ENSMUSG00000086655.1) antisense-promoter-TSS (ENSMUSG00000086655.1) -2 ENSMUSG00000086655.1 ENSMUSG00000086655 ENSMUST00000127792 C330018A13Rik antisense Interval_43684 chr13 34977154 34977635 + 0 NA TTS (ENSMUSG00000021417.15) protein_coding-TTS (ENSMUSG00000021417.15) 13336 ENSMUSG00000085962.8 ENSMUSG00000085962 ENSMUST00000171079 Gm16984 antisense Interval_36526 chr12 48387173 48387423 + 0 NA Intergenic Intergenic -107921 ENSMUSG00000112085.1 ENSMUSG00000112085 ENSMUST00000218671 Gm48587 unprocessed_pseudogene Interval_125138 chr5 64810858 64812762 + 0 NA promoter-TSS (ENSMUSG00000029178.14) protein_coding-promoter-TSS (ENSMUSG00000029178.14) 7796 ENSMUSG00000106205.1 ENSMUSG00000106205 ENSMUST00000198074 C230096K16Rik TEC Interval_119703 chr4 139330316 139331362 + 0 NA Intergenic Intergenic 6341 ENSMUSG00000118507.1 ENSMUSG00000118507 ENSMUST00000239093 AL807811.1 unprocessed_pseudogene Interval_156838 chr8 60965078 60966065 + 0 NA intron (ENSMUSG00000004319.15, intron 1 of 11) protein_coding-intron (ENSMUSG00000004319.15, intron 2 of 13) 17673 ENSMUSG00000004319.15 ENSMUSG00000004319 ENSMUST00000145493 Clcn3 protein_coding Interval_37187 chr12 59265355 59266117 + 0 NA Intergenic Intergenic 3063 ENSMUSG00000112385.1 ENSMUSG00000112385 ENSMUST00000217964 Gm48258 processed_pseudogene Interval_117600 chr4 124942516 124943434 + 0 NA promoter-TSS (ENSMUSG00000044730.17) protein_coding-promoter-TSS (ENSMUSG00000044730.17) -156 ENSMUSG00000044730.17 ENSMUSG00000044730 ENSMUST00000233875 9930104L06Rik protein_coding Interval_114018 chr4 62513732 62514482 + 0 NA exon (ENSMUSG00000028393.10, exon 2 of 12) protein_coding-exon (ENSMUSG00000028393.10, exon 2 of 12) 5774 ENSMUSG00000028393.10 ENSMUSG00000028393 ENSMUST00000030090 Alad protein_coding Interval_72890 chr17 32974264 32974574 + 0 NA intron (ENSMUSG00000053600.8, intron 2 of 3) protein_coding-intron (ENSMUSG00000053600.8, intron 1 of 3) 8574 ENSMUSG00000053600.8 ENSMUSG00000053600 ENSMUST00000234770 Zfp472 protein_coding Interval_101103 chr2 177960446 177961554 + 0 NA Intergenic Intergenic -7316 ENSMUSG00000078862.10 ENSMUSG00000078862 ENSMUST00000108928 Gm14326 protein_coding Interval_130260 chr5 125267764 125268611 + 0 NA intron (ENSMUSG00000105039.1, intron 1 of 3) lincRNA-intron (ENSMUSG00000105039.1, intron 1 of 3) 4628 ENSMUSG00000105039.1 ENSMUSG00000105039 ENSMUST00000198586 Gm32585 lincRNA Interval_86534 chr19 41522007 41523262 + 0 NA intron (ENSMUSG00000025019.17, intron 2 of 7) protein_coding-intron (ENSMUSG00000025019.17, intron 2 of 7) -53233 ENSMUSG00000025019.17 ENSMUSG00000025019 ENSMUST00000172371 Lcor protein_coding Interval_168414 chr9 80146478 80146844 + 0 NA Intergenic Intergenic -18566 ENSMUSG00000033577.18 ENSMUSG00000033577 ENSMUST00000138650 Myo6 protein_coding Interval_118921 chr4 134460590 134461184 + 0 NA Intergenic Intergenic -7477 ENSMUSG00000092812.1 ENSMUSG00000092812 ENSMUST00000175071 Gm23634 miRNA Interval_104097 chr3 58559776 58560097 + 0 NA Intergenic Intergenic -16762 ENSMUSG00000075700.9 ENSMUSG00000075700 ENSMUST00000125815 Selenot protein_coding Interval_19811 chr10 109496248 109496553 + 0 NA Intergenic Intergenic -109913 ENSMUSG00000112253.1 ENSMUSG00000112253 ENSMUST00000219849 Gm47329 processed_pseudogene Interval_65173 chr16 20344492 20344969 + 0 NA TTS (ENSMUSG00000022822.16) protein_coding-TTS (ENSMUSG00000022822.16) -27980 ENSMUSG00000022818.13 ENSMUSG00000022818 ENSMUST00000182669 Cyp2ab1 protein_coding Interval_120690 chr4 150130324 150131360 + 0 NA intron (ENSMUSG00000028976.10, intron 1 of 4) protein_coding-intron (ENSMUSG00000028976.10, intron 6 of 13) -8711 ENSMUSG00000028976.10 ENSMUSG00000028976 ENSMUST00000151504 Slc2a5 protein_coding Interval_2736 chr1 44027048 44027721 + 0 NA Intergenic Intergenic -8735 ENSMUSG00000090106.1 ENSMUSG00000090106 ENSMUST00000161575 Gm15838 processed_pseudogene Interval_144481 chr7 25379430 25380956 + 0 NA intron (ENSMUSG00000003123.15, intron 8 of 8) protein_coding-intron (ENSMUSG00000003123.15, intron 9 of 9) 3374 ENSMUSG00000053714.8 ENSMUSG00000053714 ENSMUST00000206300 4732471J01Rik antisense Interval_101397 chr2 181038578 181039724 + 0 NA promoter-TSS (ENSMUSG00000027577.14) protein_coding-promoter-TSS (ENSMUSG00000027577.14) -10823 ENSMUSG00000027577.14 ENSMUSG00000027577 ENSMUST00000124400 Chrna4 protein_coding Interval_131647 chr5 139056906 139057358 + 0 NA intron (ENSMUSG00000025855.13, intron 5 of 6) protein_coding-intron (ENSMUSG00000025855.13, intron 6 of 10) 62076 ENSMUSG00000075585.3 ENSMUSG00000075585 ENSMUST00000187923 6330403L08Rik antisense Interval_29404 chr11 83786838 83788134 + 0 NA Intergenic Intergenic -12978 ENSMUSG00000081342.1 ENSMUSG00000081342 ENSMUST00000122379 Gm11434 processed_pseudogene Interval_108793 chr3 131297125 131297598 + 0 NA intron (ENSMUSG00000027983.13, intron 2 of 3) protein_coding-intron (ENSMUSG00000027983.13, intron 2 of 4) -5282 ENSMUSG00000097761.1 ENSMUSG00000097761 ENSMUST00000181438 4930534D22Rik antisense Interval_150095 chr7 105786680 105788057 + 0 NA exon (ENSMUSG00000036862.15, exon 1 of 21) protein_coding-exon (ENSMUSG00000036862.15, exon 1 of 21) 184 ENSMUSG00000036862.15 ENSMUSG00000036862 ENSMUST00000154659 Dchs1 protein_coding Interval_140899 chr6 122660649 122661243 + 0 NA Intergenic Intergenic 34193 ENSMUSG00000046323.8 ENSMUSG00000046323 ENSMUST00000123429 Dppa3 protein_coding Interval_8012 chr1 135198569 135200023 + 0 NA Intergenic Intergenic -31615 ENSMUSG00000026424.8 ENSMUSG00000026424 ENSMUST00000027682 Gpr37l1 protein_coding Interval_14030 chr10 25707176 25708799 + 0 NA promoter-TSS (ENSMUSG00000112803.1) lincRNA-promoter-TSS (ENSMUSG00000112803.1) -44 ENSMUSG00000112803.1 ENSMUSG00000112803 ENSMUST00000217933 Gm36543 lincRNA Interval_90959 chr2 33721900 33722114 + 0 NA Intergenic Intergenic -3108 ENSMUSG00000085463.1 ENSMUSG00000085463 ENSMUST00000130532 9430024E24Rik lincRNA Interval_23377 chr11 22007067 22008305 + 0 NA intron (ENSMUSG00000042302.14, intron 23 of 24) protein_coding-intron (ENSMUSG00000042302.14, intron 22 of 23) -5976 ENSMUSG00000005917.15 ENSMUSG00000005917 ENSMUST00000147486 Otx1 protein_coding Interval_45311 chr13 54237206 54239310 + 0 NA Intergenic Intergenic -7038 ENSMUSG00000113327.1 ENSMUSG00000113327 ENSMUST00000221038 Gm48615 lincRNA Interval_147819 chr7 73771414 73773249 + 0 NA intron (ENSMUSG00000078670.3, intron 1 of 1) protein_coding-intron (ENSMUSG00000078670.3, intron 2 of 2) 6395 ENSMUSG00000078670.3 ENSMUSG00000078670 ENSMUST00000206337 Fam174b protein_coding Interval_166847 chr9 63175705 63176102 + 0 NA intron (ENSMUSG00000058444.8, intron 21 of 21) protein_coding-intron (ENSMUSG00000058444.8, intron 21 of 21) -28892 ENSMUSG00000022245.15 ENSMUSG00000022245 ENSMUST00000055281 Skor1 protein_coding Interval_118204 chr4 129522133 129522928 + 0 NA TTS (ENSMUSG00000028800.15) protein_coding-TTS (ENSMUSG00000028800.15) 2054 ENSMUSG00000028800.15 ENSMUSG00000028800 ENSMUST00000139305 Hdac1 protein_coding Interval_51125 chr14 23835534 23835912 + 0 NA intron (ENSMUSG00000063142.15, intron 1 of 16) protein_coding-intron (ENSMUSG00000063142.15, intron 1 of 29) -169268 ENSMUSG00000114953.1 ENSMUSG00000114953 ENSMUST00000223837 4930519K11Rik bidirectional_promoter_lncRNA Interval_60673 chr15 76080120 76081359 + 0 NA exon (ENSMUSG00000002524.17, exon 1 of 1) protein_coding-exon (ENSMUSG00000002524.17, exon 1 of 1) 185 ENSMUSG00000002524.17 ENSMUSG00000002524 ENSMUST00000228459 Puf60 protein_coding Interval_11693 chr1 184720614 184721142 + 0 NA Intergenic Intergenic 8381 ENSMUSG00000092578.1 ENSMUSG00000092578 ENSMUST00000172500 4930488B22Rik lincRNA Interval_145171 chr7 30440030 30441111 + 0 NA promoter-TSS (ENSMUSG00000006651.8) protein_coding-promoter-TSS (ENSMUSG00000006651.8) 4026 ENSMUSG00000006651.8 ENSMUSG00000006651 ENSMUST00000209054 Aplp1 protein_coding Interval_52335 chr14 45191439 45191920 + 0 NA intron (ENSMUSG00000021830.14, intron 6 of 8) protein_coding-intron (ENSMUSG00000021830.14, intron 6 of 20) -8568 ENSMUSG00000021830.14 ENSMUSG00000021830 ENSMUST00000123118 Txndc16 protein_coding Interval_77380 chr17 88333884 88334999 + 0 NA intron (ENSMUSG00000117351.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000117351.1, intron 1 of 1) 8041 ENSMUSG00000088791.1 ENSMUSG00000088791 ENSMUST00000158166 Gm22542 snRNA Interval_103694 chr3 51673183 51674349 + 0 NA exon (ENSMUSG00000103527.1, exon 1 of 1) TEC-exon (ENSMUSG00000103527.1, exon 1 of 1) 965 ENSMUSG00000103527.1 ENSMUSG00000103527 ENSMUST00000194360 Gm37261 TEC Interval_140730 chr6 120906539 120906750 + 0 NA TTS (ENSMUSG00000004446.12) protein_coding-TTS (ENSMUSG00000004446.12) -2029 ENSMUSG00000108125.1 ENSMUSG00000108125 ENSMUST00000204935 Gm17812 processed_pseudogene Interval_44845 chr13 49037523 49038946 + 0 NA TTS (ENSMUSG00000037989.15) protein_coding-TTS (ENSMUSG00000037989.15) -70217 ENSMUSG00000038014.7 ENSMUSG00000038014 ENSMUST00000060805 Fam120a protein_coding Interval_9973 chr1 164470436 164471534 + 0 NA Intergenic Intergenic 8543 ENSMUSG00000104011.1 ENSMUSG00000104011 ENSMUST00000191839 Gm32391 lincRNA Interval_35559 chr12 24786273 24786904 + 0 NA Intergenic Intergenic 7415 ENSMUSG00000114084.1 ENSMUSG00000114084 ENSMUST00000223420 Gm48897 processed_pseudogene Interval_85724 chr19 30095515 30097348 + 0 NA Intergenic Intergenic 17927 ENSMUSG00000024817.13 ENSMUSG00000024817 ENSMUST00000143769 Uhrf2 protein_coding Interval_156481 chr8 48614271 48615322 + 0 NA intron (ENSMUSG00000031561.16, intron 2 of 26) protein_coding-intron (ENSMUSG00000031561.16, intron 2 of 28) 16373 ENSMUSG00000110509.1 ENSMUSG00000110509 ENSMUST00000212961 Gm45772 processed_pseudogene Interval_61123 chr15 79380378 79381274 + 0 NA intron (ENSMUSG00000009035.15, intron 1 of 2) protein_coding-intron (ENSMUSG00000009035.15, intron 1 of 8) -5526 ENSMUSG00000088901.1 ENSMUSG00000088901 ENSMUST00000158276 Mir1943 miRNA Interval_166132 chr9 56915077 56916332 + 0 NA Intergenic Intergenic 12243 ENSMUSG00000110888.1 ENSMUSG00000110888 ENSMUST00000213195 Gm47237 lincRNA Interval_127588 chr5 105642459 105643738 + 0 NA Intergenic Intergenic 62658 ENSMUSG00000085771.1 ENSMUSG00000085771 ENSMUST00000150195 C230066G23Rik sense_intronic Interval_110629 chr4 5137513 5137781 + 0 NA Intergenic Intergenic -158773 ENSMUSG00000083228.1 ENSMUSG00000083228 ENSMUST00000118541 Gm11779 processed_pseudogene Interval_151320 chr7 120981457 120982922 + 0 NA promoter-TSS (ENSMUSG00000030877.11) protein_coding-promoter-TSS (ENSMUSG00000030877.11) 96 ENSMUSG00000030878.11 ENSMUSG00000030878 ENSMUST00000207722 Cdr2 protein_coding Interval_63978 chr16 4971562 4972132 + 0 NA intron (ENSMUSG00000022543.9, intron 3 of 7) transcribed_unitary_pseudogene-intron (ENSMUSG00000022543.9, intron 4 of 8) 7370 ENSMUSG00000022543.9 ENSMUSG00000022543 ENSMUST00000229605 4930451G09Rik transcribed_unitary_pseudogene Interval_49289 chr13 110309101 110310373 + 0 NA Intergenic Intergenic -4246 ENSMUSG00000045609.6 ENSMUSG00000045609 ENSMUST00000058710 Gm5455 processed_pseudogene Interval_27820 chr11 70209083 70209569 + 0 NA Intergenic Intergenic -4584 ENSMUSG00000040938.16 ENSMUSG00000040938 ENSMUST00000149880 Slc16a11 protein_coding Interval_142475 chr6 142718400 142718724 + 0 NA Intergenic Intergenic -16289 ENSMUSG00000030249.15 ENSMUSG00000030249 ENSMUST00000204870 Abcc9 protein_coding Interval_79886 chr18 35745018 35745709 + 0 NA Intergenic Intergenic -4884 ENSMUSG00000024349.10 ENSMUSG00000024349 ENSMUST00000237405 Sting1 protein_coding Interval_32706 chr11 109860013 109861034 + 0 NA Intergenic Intergenic 14645 ENSMUSG00000087393.1 ENSMUSG00000087393 ENSMUST00000143247 1700023C21Rik lincRNA Interval_39026 chr12 84548580 84549188 + 0 NA Intergenic Intergenic 18840 ENSMUSG00000085793.2 ENSMUSG00000085793 ENSMUST00000222741 Lin52 protein_coding Interval_58931 chr15 40140375 40141174 + 0 NA intron (ENSMUSG00000094112.2, intron 1 of 3) protein_coding-intron (ENSMUSG00000094112.2, intron 1 of 3) 6409 ENSMUSG00000094112.2 ENSMUSG00000094112 ENSMUST00000179120 9330182O14Rik protein_coding Interval_106057 chr3 92050507 92050897 + 0 NA Intergenic Intergenic 10804 ENSMUSG00000096133.1 ENSMUSG00000096133 ENSMUST00000177640 Gm25145 miRNA Interval_129102 chr5 117402818 117405425 + 0 NA Intergenic Intergenic -9879 ENSMUSG00000061578.8 ENSMUSG00000061578 ENSMUST00000180430 Ksr2 protein_coding Interval_69904 chr17 3092797 3093002 + 0 NA Intergenic Intergenic -4119 ENSMUSG00000116817.1 ENSMUSG00000116817 ENSMUST00000231620 Gm5679 processed_pseudogene Interval_39596 chr12 91328970 91329172 + 0 NA intron (ENSMUSG00000061533.16, intron 2 of 3) protein_coding-intron (ENSMUSG00000061533.16, intron 9 of 13) 5402 ENSMUSG00000113239.1 ENSMUSG00000113239 ENSMUST00000222339 Gm18388 processed_pseudogene Interval_140374 chr6 117625834 117626215 + 0 NA Intergenic Intergenic -13454 ENSMUSG00000107785.1 ENSMUSG00000107785 ENSMUST00000205216 Gm45083 lincRNA Interval_157234 chr8 68279413 68279668 + 0 NA intron (ENSMUSG00000053886.4, intron 1 of 8) protein_coding-intron (ENSMUSG00000053886.4, intron 1 of 8) -2767 ENSMUSG00000053886.4 ENSMUSG00000053886 ENSMUST00000212166 Sh2d4a protein_coding Interval_71971 chr17 27324874 27325713 + 0 NA promoter-TSS (ENSMUSG00000073430.5) processed_transcript-promoter-TSS (ENSMUSG00000073430.5) 147 ENSMUSG00000073430.5 ENSMUSG00000073430 ENSMUST00000231950 Gm10505 processed_transcript Interval_169760 chr9 101011585 101013116 + 0 NA intron (ENSMUSG00000032527.13, intron 6 of 6) protein_coding-intron (ENSMUSG00000032527.13, intron 6 of 14) 22531 ENSMUSG00000032527.13 ENSMUSG00000032527 ENSMUST00000189498 Pccb protein_coding Interval_166800 chr9 62789692 62790272 + 0 NA promoter-TSS (ENSMUSG00000111537.1) processed_pseudogene-promoter-TSS (ENSMUSG00000111537.1) 78 ENSMUSG00000111537.1 ENSMUSG00000111537 ENSMUST00000214567 Gm7653 processed_pseudogene Interval_171932 chr9 122687378 122687637 + 0 NA intron (ENSMUSG00000111577.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000111068.1, intron 1 of 2) -2122 ENSMUSG00000111068.1 ENSMUSG00000111068 ENSMUST00000215101 Gm35501 lincRNA Interval_56653 chr14 121177536 121178119 + 0 NA intron (ENSMUSG00000025555.14, intron 1 of 7) protein_coding-intron (ENSMUSG00000025555.14, intron 2 of 26) -70879 ENSMUSG00000085133.2 ENSMUSG00000085133 ENSMUST00000130256 B930095G15Rik sense_intronic Interval_42772 chr13 19345465 19345681 + 0 NA intron (ENSMUSG00000076757.9, intron 1 of 3) TR_C_gene-intron (ENSMUSG00000076757.9, intron 1 of 3) 1015 ENSMUSG00000076757.9 ENSMUSG00000076757 ENSMUST00000179181 Trgc4 TR_C_gene Interval_59875 chr15 60508889 60509337 + 0 NA Intergenic Intergenic 40989 ENSMUSG00000115503.1 ENSMUSG00000115503 ENSMUST00000227906 Gm6392 processed_pseudogene Interval_90793 chr2 32636742 32637570 + 0 NA Intergenic Intergenic 11718 ENSMUSG00000026817.14 ENSMUSG00000026817 ENSMUST00000135392 Ak1 protein_coding Interval_116906 chr4 118134346 118135475 + 0 NA promoter-TSS (ENSMUSG00000028538.12) protein_coding-promoter-TSS (ENSMUSG00000028538.12) 26747 ENSMUSG00000033326.15 ENSMUSG00000033326 ENSMUST00000164821 Kdm4a protein_coding Interval_51891 chr14 33376422 33376737 + 0 NA Intergenic Intergenic -6436 ENSMUSG00000087639.1 ENSMUSG00000087639 ENSMUST00000137359 Gm15512 antisense Interval_121606 chr5 3844552 3846212 + 0 NA exon (ENSMUSG00000040367.2, exon 1 of 6) protein_coding-exon (ENSMUSG00000040367.2, exon 1 of 6) 195 ENSMUSG00000040367.2 ENSMUSG00000040367 ENSMUST00000143027 Lrrd1 protein_coding Interval_128041 chr5 110447785 110449259 + 0 NA promoter-TSS (ENSMUSG00000043323.17) protein_coding-promoter-TSS (ENSMUSG00000043323.17) -19 ENSMUSG00000043323.17 ENSMUSG00000043323 ENSMUST00000200293 Fbrsl1 protein_coding Interval_7410 chr1 131116407 131117149 + 0 NA Intergenic Intergenic -14033 ENSMUSG00000089256.1 ENSMUSG00000089256 ENSMUST00000158631 Gm25717 misc_RNA Interval_118810 chr4 133832903 133834333 + 0 NA Intergenic Intergenic 17198 ENSMUSG00000084789.1 ENSMUSG00000084789 ENSMUST00000129875 Gm12974 lincRNA Interval_6489 chr1 111957331 111957913 + 0 NA Intergenic Intergenic -76314 ENSMUSG00000101875.1 ENSMUSG00000101875 ENSMUST00000077111 Gm6028 processed_pseudogene Interval_95938 chr2 118557983 118558540 + 0 NA Intergenic Intergenic -12945 ENSMUSG00000040093.16 ENSMUSG00000040093 ENSMUST00000138342 Bmf protein_coding Interval_111678 chr4 25736685 25737030 + 0 NA intron (ENSMUSG00000055373.8, intron 1 of 2) protein_coding-intron (ENSMUSG00000055373.8, intron 1 of 2) 62998 ENSMUSG00000055373.8 ENSMUSG00000055373 ENSMUST00000149875 Fut9 protein_coding Interval_163283 chr9 20565842 20566257 + 0 NA Intergenic Intergenic 10720 ENSMUSG00000111661.1 ENSMUSG00000111661 ENSMUST00000213332 Gm46142 processed_pseudogene Interval_164496 chr9 37477598 37478562 + 0 NA TTS (ENSMUSG00000111702.1) unprocessed_pseudogene-TTS (ENSMUSG00000111702.1) 563 ENSMUSG00000111702.1 ENSMUSG00000111702 ENSMUST00000214167 Gm47945 unprocessed_pseudogene Interval_155270 chr8 29415703 29416408 + 0 NA Intergenic Intergenic -129074 ENSMUSG00000110331.1 ENSMUSG00000110331 ENSMUST00000209275 Nudc-ps1 processed_pseudogene Interval_56378 chr14 118230192 118231755 + 0 NA Intergenic Intergenic 6057 ENSMUSG00000061517.8 ENSMUSG00000061517 ENSMUST00000170662 Sox21 protein_coding Interval_168150 chr9 77535617 77536400 + 0 NA intron (ENSMUSG00000032352.16, intron 1 of 13) protein_coding-intron (ENSMUSG00000032352.16, intron 1 of 13) 8840 ENSMUSG00000032352.16 ENSMUSG00000032352 ENSMUST00000183980 Lrrc1 protein_coding Interval_43328 chr13 29255631 29256278 + 0 NA intron (ENSMUSG00000006191.17, intron 15 of 16) protein_coding-intron (ENSMUSG00000006191.17, intron 15 of 16) -19334 ENSMUSG00000086423.1 ENSMUSG00000086423 ENSMUST00000137593 Gm11364 sense_intronic Interval_102631 chr3 28699148 28699376 + 0 NA intron (ENSMUSG00000027690.13, intron 1 of 9) protein_coding-intron (ENSMUSG00000027690.13, intron 1 of 10) -22255 ENSMUSG00000027690.13 ENSMUSG00000027690 ENSMUST00000169047 Slc2a2 protein_coding Interval_1191 chr1 16792395 16793326 + 0 NA Intergenic Intergenic -22722 ENSMUSG00000091020.3 ENSMUSG00000091020 ENSMUST00000071842 Gm5828 processed_pseudogene Interval_9311 chr1 156085920 156086272 + 0 NA intron (ENSMUSG00000015484.3, intron 2 of 4) protein_coding-intron (ENSMUSG00000015484.3, intron 2 of 4) 50324 ENSMUSG00000050565.16 ENSMUSG00000050565 ENSMUST00000125371 Tor1aip2 protein_coding Interval_4239 chr1 72076134 72076425 + 0 NA Intergenic Intergenic -11578 ENSMUSG00000101496.1 ENSMUSG00000101496 ENSMUST00000189382 Gm8885 processed_pseudogene Interval_165943 chr9 54840002 54840647 + 0 NA Intergenic Intergenic -15042 ENSMUSG00000111686.1 ENSMUSG00000111686 ENSMUST00000213253 Rab7-ps1 processed_pseudogene Interval_168996 chr9 90098734 90099557 + 0 NA exon (ENSMUSG00000062270.14, exon 5 of 10) protein_coding-exon (ENSMUSG00000062270.14, exon 5 of 10) 15514 ENSMUSG00000062270.14 ENSMUSG00000062270 ENSMUST00000185433 Morf4l1 protein_coding Interval_44302 chr13 43493080 43493976 + 0 NA Intergenic Intergenic 6639 ENSMUSG00000113891.1 ENSMUSG00000113891 ENSMUST00000221151 Gm47683 lincRNA Interval_147898 chr7 75280817 75281434 + 0 NA intron (ENSMUSG00000053025.13, intron 1 of 12) protein_coding-intron (ENSMUSG00000053025.13, intron 1 of 12) 6036 ENSMUSG00000088683.1 ENSMUSG00000088683 ENSMUST00000158058 Gm24858 misc_RNA Interval_76324 chr17 79068293 79069871 + 0 NA intron (ENSMUSG00000024084.8, intron 2 of 6) protein_coding-intron (ENSMUSG00000024084.8, intron 2 of 6) 16894 ENSMUSG00000024084.8 ENSMUSG00000024084 ENSMUST00000233899 Qpct protein_coding Interval_38430 chr12 78996327 78998060 + 0 NA intron (ENSMUSG00000046157.13, intron 1 of 2) protein_coding-intron (ENSMUSG00000046157.13, intron 1 of 2) 10147 ENSMUSG00000046157.13 ENSMUSG00000046157 ENSMUST00000173095 Tmem229b protein_coding Interval_117472 chr4 123971207 123973068 + 0 NA Intergenic Intergenic 45903 ENSMUSG00000082515.1 ENSMUSG00000082515 ENSMUST00000118389 Gm12902 processed_pseudogene Interval_86391 chr19 40178113 40178824 + 0 NA intron (ENSMUSG00000060613.10, intron 1 of 2) protein_coding-intron (ENSMUSG00000060613.10, intron 3 of 8) 8818 ENSMUSG00000060613.10 ENSMUSG00000060613 ENSMUST00000164351 Cyp2c70 protein_coding Interval_142291 chr6 140472277 140472616 + 0 NA intron (ENSMUSG00000030231.11, intron 1 of 9) protein_coding-intron (ENSMUSG00000030231.11, intron 3 of 30) 52275 ENSMUSG00000107891.1 ENSMUSG00000107891 ENSMUST00000204085 Gm5051 processed_pseudogene Interval_135679 chr6 43265179 43266615 + 0 NA promoter-TSS (ENSMUSG00000108190.1) antisense-promoter-TSS (ENSMUSG00000108190.1) -42 ENSMUSG00000108190.1 ENSMUSG00000108190 ENSMUST00000203086 Gm44731 antisense Interval_64259 chr16 9944300 9944626 + 0 NA intron (ENSMUSG00000059003.12, intron 3 of 13) protein_coding-intron (ENSMUSG00000059003.12, intron 1 of 11) 50460 ENSMUSG00000059003.12 ENSMUSG00000059003 ENSMUST00000197242 Grin2a protein_coding Interval_157196 chr8 67494417 67495069 + 0 NA promoter-TSS (ENSMUSG00000051147.10) protein_coding-promoter-TSS (ENSMUSG00000051147.10) -205 ENSMUSG00000051147.10 ENSMUSG00000051147 ENSMUST00000163856 Nat2 protein_coding Interval_134299 chr6 24657609 24658223 + 0 NA exon (ENSMUSG00000106946.1, exon 1 of 1) TEC-exon (ENSMUSG00000106946.1, exon 1 of 1) 2453 ENSMUSG00000106946.1 ENSMUSG00000106946 ENSMUST00000200848 Gm42856 TEC Interval_170788 chr9 110763238 110763619 + 0 NA promoter-TSS (ENSMUSG00000059741.13) protein_coding-promoter-TSS (ENSMUSG00000059741.13) -16372 ENSMUSG00000032492.14 ENSMUSG00000032492 ENSMUST00000199791 Pth1r protein_coding Interval_157740 chr8 72663241 72665622 + 0 NA intron (ENSMUSG00000048148.18, intron 4 of 18) protein_coding-intron (ENSMUSG00000048148.18, intron 4 of 18) 14137 ENSMUSG00000048148.18 ENSMUSG00000048148 ENSMUST00000162248 Nwd1 protein_coding Interval_46786 chr13 70395333 70395947 + 0 NA Intergenic Intergenic 27141 ENSMUSG00000114054.1 ENSMUSG00000114054 ENSMUST00000220989 Gm47706 processed_pseudogene Interval_6092 chr1 96736220 96737306 + 0 NA Intergenic Intergenic -25268 ENSMUSG00000077255.1 ENSMUSG00000077255 ENSMUST00000104067 Gm26078 snoRNA Interval_1576 chr1 27276162 27276745 + 0 NA Intergenic Intergenic 60315 ENSMUSG00000100310.1 ENSMUSG00000100310 ENSMUST00000188432 Gm19641 processed_pseudogene Interval_4736 chr1 78140527 78141121 + 0 NA intron (ENSMUSG00000004872.15, intron 4 of 7) protein_coding-intron (ENSMUSG00000004872.15, intron 4 of 8) 56289 ENSMUSG00000004872.15 ENSMUSG00000004872 ENSMUST00000172555 Pax3 protein_coding Interval_133916 chr6 15494770 15494952 + 0 NA Intergenic Intergenic 89880 ENSMUSG00000093317.1 ENSMUSG00000093317 ENSMUST00000175576 Gm25470 miRNA Interval_81677 chr18 63282804 63283410 + 0 NA intron (ENSMUSG00000041482.17, intron 2 of 50) protein_coding-intron (ENSMUSG00000041482.17, intron 1 of 7) 18017 ENSMUSG00000118336.1 ENSMUSG00000118336 ENSMUST00000235825 Gm50172 TEC Interval_77379 chr17 88328928 88329499 + 0 NA intron (ENSMUSG00000117351.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000117351.1, intron 1 of 1) 13269 ENSMUSG00000088791.1 ENSMUSG00000088791 ENSMUST00000158166 Gm22542 snRNA Interval_58394 chr15 34100203 34100717 + 0 NA exon (ENSMUSG00000022255.16, exon 2 of 2) protein_coding-exon (ENSMUSG00000022255.16, exon 2 of 2) -26484 ENSMUSG00000115276.1 ENSMUSG00000115276 ENSMUST00000228274 9930017N22Rik TEC Interval_73409 chr17 37033466 37034530 + 0 NA Intergenic Intergenic -10799 ENSMUSG00000076439.12 ENSMUSG00000076439 ENSMUST00000167275 Mog protein_coding Interval_112581 chr4 43389610 43389866 + 0 NA intron (ENSMUSG00000035969.15, intron 1 of 1) protein_coding-intron (ENSMUSG00000035969.15, intron 1 of 11) -24958 ENSMUSG00000035969.15 ENSMUSG00000035969 ENSMUST00000123447 Rusc2 protein_coding Interval_165523 chr9 48996990 48998273 + 0 NA intron (ENSMUSG00000032267.8, intron 1 of 3) protein_coding-intron (ENSMUSG00000032267.8, intron 1 of 23) -32641 ENSMUSG00000008590.4 ENSMUSG00000008590 ENSMUST00000008734 Htr3b protein_coding Interval_84367 chr19 10408523 10408713 + 0 NA intron (ENSMUSG00000024743.16, intron 1 of 3) protein_coding-intron (ENSMUSG00000024743.16, intron 1 of 8) 19135 ENSMUSG00000024743.16 ENSMUSG00000024743 ENSMUST00000235717 Syt7 protein_coding Interval_116704 chr4 116737755 116737981 + 0 NA intron (ENSMUSG00000033985.17, intron 2 of 10) protein_coding-intron (ENSMUSG00000033985.17, intron 1 of 10) 11969 ENSMUSG00000098491.1 ENSMUSG00000098491 ENSMUST00000183634 Gm27688 misc_RNA Interval_135584 chr6 41026737 41027413 + 0 NA TTS (ENSMUSG00000103157.1) processed_pseudogene-TTS (ENSMUSG00000103157.1) 810 ENSMUSG00000103157.1 ENSMUSG00000103157 ENSMUST00000192831 Gm38294 processed_pseudogene Interval_149842 chr7 101952199 101952678 + 0 NA intron (ENSMUSG00000066306.13, intron 1 of 13) protein_coding-intron (ENSMUSG00000066306.13, intron 1 of 13) 4847 ENSMUSG00000109872.1 ENSMUSG00000109872 ENSMUST00000210566 Gm45312 processed_pseudogene Interval_15803 chr10 57204283 57204498 + 0 NA Intergenic Intergenic 30360 ENSMUSG00000088253.1 ENSMUSG00000088253 ENSMUST00000157628 Gm24285 snRNA Interval_47027 chr13 74462304 74463664 + 0 NA promoter-TSS (ENSMUSG00000112964.1) lincRNA-promoter-TSS (ENSMUSG00000112964.1) -11659 ENSMUSG00000116765.1 ENSMUSG00000116765 ENSMUST00000231729 Gm49762 lincRNA Interval_54789 chr14 75064255 75065267 + 0 NA Intergenic Intergenic 28139 ENSMUSG00000034959.8 ENSMUSG00000034959 ENSMUST00000228689 Rubcnl protein_coding Interval_117692 chr4 125582034 125585046 + 0 NA intron (ENSMUSG00000001985.9, intron 1 of 15) protein_coding-intron (ENSMUSG00000001985.9, intron 1 of 15) 78791 ENSMUSG00000094403.1 ENSMUSG00000094403 ENSMUST00000102081 Mir692-2 miRNA Interval_156343 chr8 47567379 47568451 + 0 NA TTS (ENSMUSG00000110363.1) lincRNA-TTS (ENSMUSG00000110363.1) 10386 ENSMUSG00000110363.1 ENSMUSG00000110363 ENSMUST00000210981 Gm45576 lincRNA Interval_101030 chr2 174338959 174339574 + 0 NA intron (ENSMUSG00000027523.20, intron 3 of 11) protein_coding-intron (ENSMUSG00000027523.20, intron 3 of 11) -5046 ENSMUSG00000027523.20 ENSMUSG00000027523 ENSMUST00000129534 Gnas protein_coding Interval_40041 chr12 100757257 100758117 + 0 NA Intergenic Intergenic 11441 ENSMUSG00000064572.1 ENSMUSG00000064572 ENSMUST00000082638 Gm25801 snRNA Interval_89379 chr2 20202732 20202939 + 0 NA intron (ENSMUSG00000036617.17, intron 2 of 7) protein_coding-intron (ENSMUSG00000036617.17, intron 2 of 7) 33229 ENSMUSG00000081128.1 ENSMUSG00000081128 ENSMUST00000120816 Gm13328 processed_pseudogene Interval_37715 chr12 71347683 71349141 + 0 NA Intergenic Intergenic -7029 ENSMUSG00000113441.1 ENSMUSG00000113441 ENSMUST00000221650 Gm40438 lincRNA Interval_69416 chr16 93047436 93048634 + 0 NA Intergenic Intergenic -24720 ENSMUSG00000098983.1 ENSMUSG00000098983 ENSMUST00000184529 Gm28003 miRNA Interval_162531 chr9 3987752 3989776 + 0 NA Intergenic Intergenic -225158 ENSMUSG00000110691.1 ENSMUSG00000110691 ENSMUST00000211927 Gm5363 processed_pseudogene Interval_125772 chr5 74043294 74043573 + 0 NA intron (ENSMUSG00000054814.14, intron 1 of 8) protein_coding-intron (ENSMUSG00000054814.14, intron 1 of 8) 10072 ENSMUSG00000106993.1 ENSMUSG00000106993 ENSMUST00000201586 Gm43417 TEC Interval_98598 chr2 153498528 153499833 + 0 NA intron (ENSMUSG00000061411.12, intron 1 of 10) protein_coding-intron (ENSMUSG00000061411.12, intron 1 of 10) 6390 ENSMUSG00000079001.1 ENSMUSG00000079001 ENSMUST00000109783 4930404H24Rik protein_coding Interval_84028 chr19 6820549 6822050 + 0 NA Intergenic Intergenic 8439 ENSMUSG00000118181.1 ENSMUSG00000118181 ENSMUST00000235920 CAAA01066123.1 processed_transcript Interval_146751 chr7 49914786 49916795 + 0 NA intron (ENSMUSG00000039728.15, intron 3 of 15) protein_coding-intron (ENSMUSG00000039728.15, intron 3 of 15) 5491 ENSMUSG00000039728.15 ENSMUSG00000039728 ENSMUST00000107605 Slc6a5 protein_coding Interval_62090 chr15 86404910 86405772 + 0 NA intron (ENSMUSG00000051864.10, intron 11 of 12) protein_coding-intron (ENSMUSG00000051864.10, intron 11 of 12) 69757 ENSMUSG00000115918.1 ENSMUSG00000115918 ENSMUST00000229685 A930001M01Rik antisense Interval_156593 chr8 53869940 53870424 + 0 NA Intergenic Intergenic -41557 ENSMUSG00000110334.1 ENSMUSG00000110334 ENSMUST00000210505 Gm19921 processed_pseudogene Interval_106527 chr3 96953589 96954133 + 0 NA intron (ENSMUSG00000057123.14, intron 1 of 3) protein_coding-intron (ENSMUSG00000057123.14, intron 1 of 3) -27841 ENSMUSG00000049908.6 ENSMUSG00000049908 ENSMUST00000062944 Gja8 protein_coding Interval_155453 chr8 33676821 33677134 + 0 NA intron (ENSMUSG00000031584.16, intron 5 of 8) protein_coding-intron (ENSMUSG00000031584.16, intron 5 of 12) -14824 ENSMUSG00000088856.1 ENSMUSG00000088856 ENSMUST00000158231 Gm24727 snoRNA Interval_147185 chr7 64201835 64202330 + 0 NA promoter-TSS (ENSMUSG00000030523.18) protein_coding-promoter-TSS (ENSMUSG00000030523.18) 442 ENSMUSG00000108645.1 ENSMUSG00000108645 ENSMUST00000206473 Gm44722 TEC Interval_77872 chr18 4920075 4922611 + 0 NA promoter-TSS (ENSMUSG00000024236.18) protein_coding-promoter-TSS (ENSMUSG00000024236.18) 108857 ENSMUSG00000097043.1 ENSMUSG00000097043 ENSMUST00000180904 Gm10556 lincRNA Interval_91164 chr2 35610308 35610850 + 0 NA intron (ENSMUSG00000026883.17, intron 1 of 16) protein_coding-intron (ENSMUSG00000026883.17, intron 1 of 16) -52094 ENSMUSG00000086555.2 ENSMUSG00000086555 ENSMUST00000134679 Gm13446 processed_transcript Interval_167462 chr9 69539312 69539548 + 0 NA Intergenic Intergenic 52647 ENSMUSG00000032231.14 ENSMUSG00000032231 ENSMUST00000154591 Anxa2 protein_coding Interval_74427 chr17 50253870 50254633 + 0 NA Intergenic Intergenic 15043 ENSMUSG00000067103.6 ENSMUSG00000067103 ENSMUST00000086914 AY702103 lincRNA Interval_80857 chr18 49507248 49507474 + 0 NA Intergenic Intergenic -15928 ENSMUSG00000100297.1 ENSMUSG00000100297 ENSMUST00000190201 1700044K03Rik lincRNA Interval_64614 chr16 13671548 13672968 + 0 NA exon (ENSMUSG00000022684.15, exon 1 of 1) protein_coding-exon (ENSMUSG00000022684.15, exon 1 of 1) 271 ENSMUSG00000022684.15 ENSMUSG00000022684 ENSMUST00000154568 Bfar protein_coding Interval_117666 chr4 125451787 125452360 + 0 NA Intergenic Intergenic -38627 ENSMUSG00000001985.9 ENSMUSG00000001985 ENSMUST00000030676 Grik3 protein_coding Interval_23069 chr11 19641164 19641439 + 0 NA Intergenic Intergenic -13240 ENSMUSG00000086911.1 ENSMUSG00000086911 ENSMUST00000146531 Gm12027 lincRNA Interval_83985 chr19 5944564 5945494 + 0 NA intron (ENSMUSG00000024833.15, intron 3 of 4) protein_coding-intron (ENSMUSG00000024833.15, intron 13 of 17) 19140 ENSMUSG00000024833.15 ENSMUSG00000024833 ENSMUST00000238043 Pola2 protein_coding Interval_151172 chr7 118970385 118970872 + 0 NA promoter-TSS (ENSMUSG00000109517.1) antisense-promoter-TSS (ENSMUSG00000109517.1) -942 ENSMUSG00000109517.1 ENSMUSG00000109517 ENSMUST00000208287 Gm44763 antisense Interval_81434 chr18 60732758 60733613 + 0 NA promoter-TSS (ENSMUSG00000054008.9) protein_coding-promoter-TSS (ENSMUSG00000054008.9) -35 ENSMUSG00000054008.9 ENSMUSG00000054008 ENSMUST00000237070 Ndst1 protein_coding Interval_67272 chr16 45223687 45224841 + 0 NA promoter-TSS (ENSMUSG00000052013.15) protein_coding-promoter-TSS (ENSMUSG00000052013.15) 19164 ENSMUSG00000062284.5 ENSMUSG00000062284 ENSMUST00000078768 Gm6030 processed_pseudogene Interval_100509 chr2 169750991 169751481 + 0 NA intron (ENSMUSG00000047907.11, intron 1 of 2) protein_coding-intron (ENSMUSG00000047907.11, intron 1 of 1) -122918 ENSMUSG00000103662.1 ENSMUSG00000103662 ENSMUST00000191912 Gm34294 TEC Interval_160577 chr8 110808124 110809617 + 0 NA Intergenic Intergenic 3232 ENSMUSG00000085068.1 ENSMUSG00000085068 ENSMUST00000157018 Gm15895 antisense Interval_64334 chr16 10571239 10572034 + 0 NA intron (ENSMUSG00000068663.14, intron 5 of 22) protein_coding-intron (ENSMUSG00000068663.14, intron 5 of 20) 26272 ENSMUSG00000068663.14 ENSMUSG00000068663 ENSMUST00000145866 Clec16a protein_coding Interval_161049 chr8 117157240 117158673 + 0 NA promoter-TSS (ENSMUSG00000052557.11) protein_coding-promoter-TSS (ENSMUSG00000052557.11) -181 ENSMUSG00000052557.11 ENSMUSG00000052557 ENSMUST00000162997 Gan protein_coding Interval_96552 chr2 125617447 125617832 + 0 NA intron (ENSMUSG00000068394.4, intron 6 of 27) protein_coding-intron (ENSMUSG00000068394.4, intron 6 of 27) 7474 ENSMUSG00000068394.4 ENSMUSG00000068394 ENSMUST00000089776 Cep152 protein_coding Interval_50355 chr14 12016828 12018011 + 0 NA intron (ENSMUSG00000021745.14, intron 4 of 29) protein_coding-intron (ENSMUSG00000021745.14, intron 4 of 29) -36211 ENSMUSG00000085883.2 ENSMUSG00000085883 ENSMUST00000151564 Gm3848 antisense Interval_90907 chr2 33416959 33417924 + 0 NA intron (ENSMUSG00000068966.10, intron 1 of 1) protein_coding-intron (ENSMUSG00000068966.10, intron 1 of 1) 13876 ENSMUSG00000068966.10 ENSMUSG00000068966 ENSMUST00000134589 Zbtb34 protein_coding Interval_78815 chr18 20768096 20769370 + 0 NA Intergenic Intergenic -22329 ENSMUSG00000056124.5 ENSMUSG00000056124 ENSMUST00000070080 B4galt6 protein_coding Interval_78871 chr18 21066470 21067928 + 0 NA intron (ENSMUSG00000024313.8, intron 1 of 6) protein_coding-intron (ENSMUSG00000024313.8, intron 1 of 6) -5145 ENSMUSG00000024313.8 ENSMUSG00000024313 ENSMUST00000082235 Mep1b protein_coding Interval_41067 chr12 110936151 110936564 + 0 NA exon (ENSMUSG00000021275.16, exon 10 of 20) protein_coding-exon (ENSMUSG00000021275.16, exon 10 of 20) 38243 ENSMUSG00000096942.1 ENSMUSG00000096942 ENSMUST00000181233 Rps19-ps6 processed_pseudogene Interval_1826 chr1 34038210 34038906 + 0 NA intron (ENSMUSG00000026131.20, intron 1 of 97) protein_coding-intron (ENSMUSG00000026131.20, intron 1 of 97) 6458 ENSMUSG00000103364.1 ENSMUSG00000103364 ENSMUST00000194178 Gm38157 TEC Interval_62915 chr15 97869111 97869987 + 0 NA intron (ENSMUSG00000022479.15, intron 5 of 9) protein_coding-intron (ENSMUSG00000022479.15, intron 5 of 9) -38055 ENSMUSG00000022475.19 ENSMUSG00000022475 ENSMUST00000134258 Hdac7 protein_coding Interval_1940 chr1 34801360 34802497 + 0 NA TTS (ENSMUSG00000118272.1) protein_coding-TTS (ENSMUSG00000118272.1) 134 ENSMUSG00000118272.1 ENSMUSG00000118272 ENSMUST00000211073 Arhgef4 protein_coding Interval_150459 chr7 110800791 110801486 + 0 NA intron (ENSMUSG00000030788.16, intron 2 of 2) protein_coding-intron (ENSMUSG00000005686.17, intron 7 of 14) -1343 ENSMUSG00000106468.1 ENSMUSG00000106468 ENSMUST00000195971 Gm47282 miRNA Interval_119069 chr4 135317963 135318587 + 0 NA Intergenic Intergenic -10305 ENSMUSG00000082833.1 ENSMUSG00000082833 ENSMUST00000117408 Gm12982 processed_pseudogene Interval_40731 chr12 107979617 107981009 + 0 NA intron (ENSMUSG00000048251.15, intron 2 of 3) protein_coding-intron (ENSMUSG00000048251.15, intron 2 of 3) 23101 ENSMUSG00000048251.15 ENSMUSG00000048251 ENSMUST00000109891 Bcl11b protein_coding Interval_157892 chr8 75251023 75251314 + 0 NA Intergenic Intergenic 24496 ENSMUSG00000110515.1 ENSMUSG00000110515 ENSMUST00000212828 Gm9644 processed_pseudogene Interval_93481 chr2 73436492 73437730 + 0 NA TTS (ENSMUSG00000075284.10) protein_coding-TTS (ENSMUSG00000075284.10) 15202 ENSMUSG00000085768.1 ENSMUSG00000085768 ENSMUST00000123663 Gm13707 antisense Interval_110218 chr3 154472685 154473555 + 0 NA Intergenic Intergenic 123978 ENSMUSG00000047583.9 ENSMUSG00000047583 ENSMUST00000122976 Tyw3 protein_coding Interval_150906 chr7 116268144 116268877 + 0 NA intron (ENSMUSG00000045659.18, intron 3 of 18) protein_coding-intron (ENSMUSG00000045659.18, intron 3 of 26) 14233 ENSMUSG00000108650.1 ENSMUSG00000108650 ENSMUST00000205675 Gm44867 sense_intronic Interval_126922 chr5 97203276 97204809 + 0 NA intron (ENSMUSG00000105850.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000105850.1, intron 1 of 1) 8456 ENSMUSG00000105850.1 ENSMUSG00000105850 ENSMUST00000199885 Gm2861 lincRNA Interval_109150 chr3 136790745 136792204 + 0 NA intron (ENSMUSG00000028161.17, intron 2 of 2) protein_coding-intron (ENSMUSG00000028161.17, intron 1 of 13) 6904 ENSMUSG00000106439.1 ENSMUSG00000106439 ENSMUST00000200068 Gm44327 miRNA Interval_141944 chr6 135703481 135704054 + 0 NA Intergenic Intergenic -29103 ENSMUSG00000086239.1 ENSMUSG00000086239 ENSMUST00000136027 Gm14329 lincRNA Interval_38831 chr12 83084271 83085453 + 0 NA intron (ENSMUSG00000021219.16, intron 11 of 14) protein_coding-intron (ENSMUSG00000021219.16, intron 11 of 14) 14012 ENSMUSG00000102029.1 ENSMUSG00000102029 ENSMUST00000187556 Gm29530 antisense Interval_109617 chr3 145275830 145276341 + 0 NA Intergenic Intergenic 127067 ENSMUSG00000028256.16 ENSMUSG00000028256 ENSMUST00000200353 Odf2l protein_coding Interval_132354 chr5 144411804 144412428 + 0 NA intron (ENSMUSG00000047843.16, intron 3 of 3) protein_coding-intron (ENSMUSG00000047843.16, intron 3 of 3) 5514 ENSMUSG00000083574.1 ENSMUSG00000083574 ENSMUST00000118354 Gm15709 processed_pseudogene Interval_160784 chr8 112234328 112234845 + 0 NA Intergenic Intergenic 2380 ENSMUSG00000110435.1 ENSMUSG00000110435 ENSMUST00000212314 Gm3635 processed_pseudogene Interval_139499 chr6 100569999 100570723 + 0 NA exon (ENSMUSG00000035378.17, exon 11 of 11) protein_coding-exon (ENSMUSG00000035378.17, exon 11 of 11) -34322 ENSMUSG00000079224.5 ENSMUSG00000079224 ENSMUST00000121217 Gm6565 processed_pseudogene Interval_71149 chr17 20229758 20230019 + 0 NA intron (ENSMUSG00000091670.3, intron 1 of 5) protein_coding-intron (ENSMUSG00000091670.3, intron 1 of 5) 5164 ENSMUSG00000091670.3 ENSMUSG00000091670 ENSMUST00000167382 Vmn2r105 protein_coding Interval_22853 chr11 16751789 16753479 + 0 NA intron (ENSMUSG00000020122.16, intron 1 of 15) protein_coding-intron (ENSMUSG00000020122.16, intron 1 of 27) 404 ENSMUSG00000020122.16 ENSMUSG00000020122 ENSMUST00000138518 Egfr protein_coding Interval_87554 chr19 53411842 53412699 + 0 NA Intergenic Intergenic 21481 ENSMUSG00000117768.1 ENSMUSG00000117768 ENSMUST00000238029 8030456M14Rik bidirectional_promoter_lncRNA Interval_131981 chr5 141810088 141810497 + 0 NA intron (ENSMUSG00000039683.16, intron 5 of 9) protein_coding-intron (ENSMUSG00000039683.16, intron 5 of 44) -194290 ENSMUSG00000085540.1 ENSMUSG00000085540 ENSMUST00000150385 Gm16036 antisense Interval_76509 chr17 80668063 80668804 + 0 NA intron (ENSMUSG00000024242.15, intron 3 of 6) protein_coding-intron (ENSMUSG00000024242.15, intron 2 of 33) -43447 ENSMUSG00000024242.15 ENSMUSG00000024242 ENSMUST00000234486 Map4k3 protein_coding Interval_172357 chrX 13415787 13417021 + 0 NA Intergenic Intergenic -37726 ENSMUSG00000080818.4 ENSMUSG00000080818 ENSMUST00000118975 Gm9434 processed_pseudogene Interval_98518 chr2 152932711 152934029 + 0 NA promoter-TSS (ENSMUSG00000074676.2) protein_coding-promoter-TSS (ENSMUSG00000074676.2) -162 ENSMUSG00000074676.2 ENSMUSG00000074676 ENSMUST00000099200 Foxs1 protein_coding Interval_65356 chr16 21815194 21815382 + 0 NA intron (ENSMUSG00000033618.7, intron 2 of 14) protein_coding-intron (ENSMUSG00000033618.7, intron 2 of 14) -10654 ENSMUSG00000033618.7 ENSMUSG00000033618 ENSMUST00000042065 Map3k13 protein_coding Interval_76305 chr17 78925656 78926011 + 0 NA intron (ENSMUSG00000024081.9, intron 1 of 1) protein_coding-intron (ENSMUSG00000024081.9, intron 8 of 15) 151 ENSMUSG00000024081.9 ENSMUSG00000024081 ENSMUST00000232899 Cebpz protein_coding Interval_166991 chr9 64352377 64352911 + 0 NA Intergenic Intergenic -11387 ENSMUSG00000032396.17 ENSMUSG00000032396 ENSMUST00000128129 Dis3l protein_coding Interval_118811 chr4 133836782 133837209 + 0 NA Intergenic Intergenic 20575 ENSMUSG00000084789.1 ENSMUSG00000084789 ENSMUST00000129875 Gm12974 lincRNA Interval_39735 chr12 95875173 95875508 + 0 NA Intergenic Intergenic 141230 ENSMUSG00000112067.1 ENSMUSG00000112067 ENSMUST00000217888 Gm48015 TEC Interval_42074 chr13 7630207 7630798 + 0 NA Intergenic Intergenic -2542 ENSMUSG00000112939.1 ENSMUSG00000112939 ENSMUST00000221837 Gm48251 processed_pseudogene Interval_143342 chr7 5915622 5915872 + 0 NA Intergenic Intergenic 10728 ENSMUSG00000092393.2 ENSMUSG00000092393 ENSMUST00000174652 Gm20399 processed_pseudogene Interval_131504 chr5 137613188 137614129 + 0 NA exon (ENSMUSG00000106617.1, exon 2 of 2) antisense-exon (ENSMUSG00000106617.1, exon 2 of 2) 806 ENSMUSG00000106617.1 ENSMUSG00000106617 ENSMUST00000196660 Gm36266 antisense Interval_90867 chr2 33078840 33079280 + 0 NA intron (ENSMUSG00000038860.15, intron 1 of 17) protein_coding-intron (ENSMUSG00000038860.15, intron 1 of 27) -44276 ENSMUSG00000038860.15 ENSMUSG00000038860 ENSMUST00000124000 Garnl3 protein_coding Interval_63453 chr15 101182674 101183329 + 0 NA intron (ENSMUSG00000000532.11, intron 1 of 8) protein_coding-intron (ENSMUSG00000000532.11, intron 1 of 8) 8934 ENSMUSG00000000532.11 ENSMUSG00000000532 ENSMUST00000000544 Acvr1b protein_coding Interval_173226 chrX 74428350 74429998 + 0 NA promoter-TSS (ENSMUSG00000031400.10) protein_coding-promoter-TSS (ENSMUSG00000031400.10) -294 ENSMUSG00000031400.10 ENSMUSG00000031400 ENSMUST00000155963 G6pdx protein_coding Interval_93010 chr2 69574620 69575257 + 0 NA intron (ENSMUSG00000027070.14, intron 1 of 24) protein_coding-intron (ENSMUSG00000027070.14, intron 1 of 78) -65793 ENSMUSG00000027070.14 ENSMUSG00000027070 ENSMUST00000092551 Lrp2 protein_coding Interval_92109 chr2 53290907 53291121 + 0 NA Intergenic Intergenic -16173 ENSMUSG00000088928.1 ENSMUSG00000088928 ENSMUST00000158303 Gm25898 snRNA Interval_88999 chr2 14170563 14170791 + 0 NA Intergenic Intergenic -3846 ENSMUSG00000061531.8 ENSMUSG00000061531 ENSMUST00000077517 Tmem236 protein_coding Interval_76576 chr17 81432486 81432823 + 0 NA exon (ENSMUSG00000054640.15, exon 7 of 10) protein_coding-exon (ENSMUSG00000054640.15, exon 7 of 10) -9109 ENSMUSG00000079333.3 ENSMUSG00000079333 ENSMUST00000168858 Gm11096 protein_coding Interval_47629 chr13 90377316 90378135 + 0 NA intron (ENSMUSG00000114204.1, intron 3 of 3) lincRNA-intron (ENSMUSG00000114204.1, intron 3 of 3) 8832 ENSMUSG00000102793.1 ENSMUSG00000102793 ENSMUST00000192337 Gm37708 TEC Interval_44270 chr13 43232008 43232740 + 0 NA intron (ENSMUSG00000051335.6, intron 1 of 1) protein_coding-intron (ENSMUSG00000051335.6, intron 1 of 1) 71031 ENSMUSG00000051335.6 ENSMUSG00000051335 ENSMUST00000222779 Gfod1 protein_coding Interval_161662 chr8 121872050 121873314 + 0 NA intron (ENSMUSG00000092329.1, intron 1 of 15) protein_coding-intron (ENSMUSG00000092329.1, intron 1 of 15) -15079 ENSMUSG00000098109.1 ENSMUSG00000098109 ENSMUST00000182121 9530085P06Rik TEC Interval_1455 chr1 23686163 23686339 + 0 NA Intergenic Intergenic -75502 ENSMUSG00000026156.8 ENSMUSG00000026156 ENSMUST00000140583 B3gat2 protein_coding Interval_147603 chr7 68996912 68997605 + 0 NA intron (ENSMUSG00000109524.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000109524.1, intron 1 of 1) 7854 ENSMUSG00000109524.1 ENSMUSG00000109524 ENSMUST00000207562 Gm44691 lincRNA Interval_125528 chr5 69042197 69042413 + 0 NA Intergenic Intergenic -81916 ENSMUSG00000107117.1 ENSMUSG00000107117 ENSMUST00000202890 Gm43842 TEC Interval_112435 chr4 41246713 41247027 + 0 NA intron (ENSMUSG00000028433.14, intron 1 of 8) protein_coding-intron (ENSMUSG00000028433.14, intron 2 of 28) -5747 ENSMUSG00000081866.1 ENSMUSG00000081866 ENSMUST00000118435 Gm12401 processed_pseudogene Interval_15881 chr10 58703066 58703657 + 0 NA promoter-TSS (ENSMUSG00000091526.2) lincRNA-promoter-TSS (ENSMUSG00000091526.2) 1290 ENSMUSG00000087994.1 ENSMUSG00000087994 ENSMUST00000157369 Gm25055 snoRNA Interval_10777 chr1 174600282 174601025 + 0 NA intron (ENSMUSG00000028354.13, intron 4 of 17) protein_coding-intron (ENSMUSG00000028354.13, intron 4 of 17) -9156 ENSMUSG00000028354.13 ENSMUSG00000028354 ENSMUST00000193905 Fmn2 protein_coding Interval_70299 chr17 8320042 8320407 + 0 NA promoter-TSS (ENSMUSG00000073468.12) protein_coding-promoter-TSS (ENSMUSG00000073468.12) 9115 ENSMUSG00000117569.1 ENSMUSG00000117569 ENSMUST00000140890 Gm49987 processed_transcript Interval_76111 chr17 75087297 75087907 + 0 NA intron (ENSMUSG00000001870.16, intron 3 of 34) protein_coding-intron (ENSMUSG00000001870.16, intron 3 of 33) -77605 ENSMUSG00000084025.1 ENSMUSG00000084025 ENSMUST00000120159 Gm6276 processed_pseudogene Interval_45261 chr13 53665328 53666418 + 0 NA Intergenic Intergenic 17288 ENSMUSG00000113329.1 ENSMUSG00000113329 ENSMUST00000221718 4930555G21Rik lincRNA Interval_61673 chr15 83322656 83323709 + 0 NA intron (ENSMUSG00000054277.8, intron 8 of 15) protein_coding-intron (ENSMUSG00000054277.8, intron 8 of 15) 10085 ENSMUSG00000054277.8 ENSMUSG00000054277 ENSMUST00000227511 Arfgap3 protein_coding Interval_160314 chr8 108175215 108175607 + 0 NA intron (ENSMUSG00000038872.10, intron 3 of 4) protein_coding-intron (ENSMUSG00000038872.10, intron 2 of 15) 180852 ENSMUSG00000038872.10 ENSMUSG00000038872 ENSMUST00000043896 Zfhx3 protein_coding Interval_112655 chr4 43850603 43851114 + 0 NA promoter-TSS (ENSMUSG00000071000.3) protein_coding-promoter-TSS (ENSMUSG00000071000.3) -707 ENSMUSG00000071000.3 ENSMUSG00000071000 ENSMUST00000095108 Olfr155 protein_coding Interval_6004 chr1 93845050 93846818 + 0 NA intron (ENSMUSG00000073609.9, intron 8 of 9) protein_coding-intron (ENSMUSG00000073609.9, intron 8 of 9) -15372 ENSMUSG00000094651.2 ENSMUSG00000094651 ENSMUST00000187896 Gal3st2 protein_coding Interval_130334 chr5 125919901 125920136 + 0 NA Intergenic Intergenic -8752 ENSMUSG00000105274.1 ENSMUSG00000105274 ENSMUST00000199057 1700048F04Rik lincRNA Interval_117882 chr4 126855966 126856277 + 0 NA intron (ENSMUSG00000028830.14, intron 22 of 23) protein_coding-intron (ENSMUSG00000028830.14, intron 22 of 23) 4991 ENSMUSG00000088984.1 ENSMUSG00000088984 ENSMUST00000158359 Gm25604 snoRNA Interval_61876 chr15 84835927 84836229 + 0 NA intron (ENSMUSG00000016624.15, intron 2 of 11) protein_coding-intron (ENSMUSG00000016624.15, intron 2 of 12) -30239 ENSMUSG00000097954.1 ENSMUSG00000097954 ENSMUST00000182243 Gm4217 processed_pseudogene Interval_126226 chr5 83292271 83292554 + 0 NA intron (ENSMUSG00000049537.10, intron 6 of 7) protein_coding-intron (ENSMUSG00000049537.10, intron 6 of 11) 8040 ENSMUSG00000081822.1 ENSMUSG00000081822 ENSMUST00000117478 Gm15626 processed_pseudogene Interval_140075 chr6 113852199 113852809 + 0 NA intron (ENSMUSG00000030302.16, intron 3 of 3) protein_coding-intron (ENSMUSG00000030302.16, intron 1 of 19) 39035 ENSMUSG00000030302.16 ENSMUSG00000030302 ENSMUST00000154738 Atp2b2 protein_coding Interval_64305 chr16 10366152 10367037 + 0 NA intron (ENSMUSG00000039179.13, intron 5 of 5) protein_coding-intron (ENSMUSG00000039179.13, intron 5 of 6) 28854 ENSMUSG00000039179.13 ENSMUSG00000039179 ENSMUST00000115831 Tekt5 protein_coding Interval_92408 chr2 59585178 59586134 + 0 NA Intergenic Intergenic -20972 ENSMUSG00000081157.1 ENSMUSG00000081157 ENSMUST00000118837 Gm13552 processed_pseudogene Interval_173323 chrX 79635445 79635819 + 0 NA promoter-TSS (ENSMUSG00000046942.17) protein_coding-promoter-TSS (ENSMUSG00000046942.17) -50 ENSMUSG00000046942.17 ENSMUSG00000046942 ENSMUST00000052283 Mageb16 protein_coding Interval_62240 chr15 89100932 89101487 + 0 NA promoter-TSS (ENSMUSG00000051786.15) protein_coding-promoter-TSS (ENSMUSG00000051786.15) 12125 ENSMUSG00000035757.16 ENSMUSG00000035757 ENSMUST00000082439 Selenoo protein_coding Interval_91089 chr2 34965416 34966010 + 0 NA promoter-TSS (ENSMUSG00000083533.2) processed_pseudogene-promoter-TSS (ENSMUSG00000083533.2) -809 ENSMUSG00000083533.2 ENSMUSG00000083533 ENSMUST00000121107 Gm13450 processed_pseudogene Interval_29082 chr11 80208463 80209739 + 0 NA promoter-TSS (ENSMUSG00000017686.17) protein_coding-promoter-TSS (ENSMUSG00000017686.17) 24878 ENSMUSG00000020707.6 ENSMUSG00000020707 ENSMUST00000134909 Rnf135 protein_coding Interval_140283 chr6 116107138 116108293 + 0 NA promoter-TSS (ENSMUSG00000092625.2) antisense-promoter-TSS (ENSMUSG00000092625.2) 65 ENSMUSG00000092625.2 ENSMUSG00000092625 ENSMUST00000174032 Gm20404 antisense Interval_60575 chr15 75281752 75282694 + 0 NA Intergenic Intergenic 13521 ENSMUSG00000022583.12 ENSMUSG00000022583 ENSMUST00000189654 Ly6f protein_coding Interval_4901 chr1 82173293 82174391 + 0 NA Intergenic Intergenic 41926 ENSMUSG00000098797.1 ENSMUSG00000098797 ENSMUST00000183462 Mir6344 miRNA Interval_173345 chrX 82654717 82655184 + 0 NA Intergenic Intergenic 32872 ENSMUSG00000082913.1 ENSMUSG00000082913 ENSMUST00000120424 Gm14739 processed_pseudogene Interval_47330 chr13 81480422 81480688 + 0 NA intron (ENSMUSG00000069170.14, intron 52 of 89) protein_coding-intron (ENSMUSG00000069170.14, intron 52 of 89) -20247 ENSMUSG00000114454.1 ENSMUSG00000114454 ENSMUST00000224788 Gm48567 processed_pseudogene Interval_42892 chr13 21172328 21173321 + 0 NA Intergenic Intergenic -7400 ENSMUSG00000021326.13 ENSMUSG00000021326 ENSMUST00000124794 Trim27 protein_coding Interval_56026 chr14 104684670 104684933 + 0 NA intron (ENSMUSG00000115432.1, intron 2 of 4) lincRNA-intron (ENSMUSG00000115432.1, intron 2 of 4) 45677 ENSMUSG00000115432.1 ENSMUSG00000115432 ENSMUST00000228036 D130009I18Rik lincRNA Interval_92468 chr2 59896519 59897184 + 0 NA Intergenic Intergenic -34125 ENSMUSG00000026988.15 ENSMUSG00000026988 ENSMUST00000131285 Wdsub1 protein_coding Interval_171822 chr9 121452606 121453289 + 0 NA TTS (ENSMUSG00000032536.12) protein_coding-TTS (ENSMUSG00000032536.12) 41563 ENSMUSG00000032532.7 ENSMUSG00000032532 ENSMUST00000217581 Cck protein_coding Interval_160357 chr8 108726767 108727066 + 0 NA intron (ENSMUSG00000038872.10, intron 1 of 9) protein_coding-intron (ENSMUSG00000038872.10, intron 1 of 9) -10677 ENSMUSG00000104292.1 ENSMUSG00000104292 ENSMUST00000191614 Gm38042 TEC Interval_105265 chr3 84345069 84345640 + 0 NA Intergenic Intergenic 34567 ENSMUSG00000104004.1 ENSMUSG00000104004 ENSMUST00000192777 4930565D16Rik lincRNA Interval_172153 chrX 8049145 8049408 + 0 NA promoter-TSS (ENSMUSG00000087193.7) antisense-promoter-TSS (ENSMUSG00000087193.7) 2047 ENSMUSG00000068243.6 ENSMUSG00000068243 ENSMUST00000119726 Gm7079 processed_pseudogene Interval_39406 chr12 87219763 87220071 + 0 NA Intergenic Intergenic 18815 ENSMUSG00000072919.4 ENSMUSG00000072919 ENSMUST00000221768 Noxred1 protein_coding Interval_121029 chr4 152318621 152319330 + 0 NA promoter-TSS (ENSMUSG00000058498.12) protein_coding-promoter-TSS (ENSMUSG00000058498.12) -517 ENSMUSG00000058498.12 ENSMUSG00000058498 ENSMUST00000146496 Rnf207 protein_coding Interval_118384 chr4 131020570 131021002 + 0 NA Intergenic Intergenic -10312 ENSMUSG00000086262.7 ENSMUSG00000086262 ENSMUST00000153810 A930031H19Rik lincRNA Interval_19919 chr10 111201217 111201432 + 0 NA intron (ENSMUSG00000020189.15, intron 1 of 5) protein_coding-intron (ENSMUSG00000020189.15, intron 1 of 22) 21372 ENSMUSG00000112642.1 ENSMUSG00000112642 ENSMUST00000219788 Gm17849 processed_pseudogene Interval_82090 chr18 67668382 67668612 + 0 NA intron (ENSMUSG00000024539.17, intron 9 of 9) protein_coding-intron (ENSMUSG00000024539.17, intron 9 of 9) 21727 ENSMUSG00000024539.17 ENSMUSG00000024539 ENSMUST00000128169 Ptpn2 protein_coding Interval_30227 chr11 91196598 91197330 + 0 NA Intergenic Intergenic -335616 ENSMUSG00000083764.1 ENSMUSG00000083764 ENSMUST00000118450 Gm11516 processed_pseudogene Interval_15399 chr10 45467902 45470188 + 0 NA exon (ENSMUSG00000063804.8, exon 2 of 5) protein_coding-exon (ENSMUSG00000063804.8, exon 2 of 5) 17350 ENSMUSG00000063804.8 ENSMUSG00000063804 ENSMUST00000214555 Lin28b protein_coding Interval_151476 chr7 122945323 122945751 + 0 NA Intergenic Intergenic 24513 ENSMUSG00000108452.1 ENSMUSG00000108452 ENSMUST00000205998 4930413G21Rik TEC Interval_133595 chr6 7382756 7383085 + 0 NA Intergenic Intergenic 6953 ENSMUSG00000107517.1 ENSMUSG00000107517 ENSMUST00000203145 Gm44046 TEC Interval_59440 chr15 53182153 53182469 + 0 NA intron (ENSMUSG00000061731.9, intron 1 of 10) protein_coding-intron (ENSMUSG00000061731.9, intron 1 of 10) -74443 ENSMUSG00000061731.9 ENSMUSG00000061731 ENSMUST00000140798 Ext1 protein_coding Interval_78023 chr18 6897836 6898157 + 0 NA Intergenic Intergenic 38625 ENSMUSG00000117652.1 ENSMUSG00000117652 ENSMUST00000176586 Gm2350 sense_overlapping Interval_72377 chr17 29476255 29478101 + 0 NA intron (ENSMUSG00000097125.2, intron 1 of 4) antisense-intron (ENSMUSG00000097125.2, intron 1 of 3) -7547 ENSMUSG00000097125.2 ENSMUSG00000097125 ENSMUST00000234684 Gm26885 antisense Interval_141853 chr6 134938282 134939125 + 0 NA intron (ENSMUSG00000098318.7, intron 1 of 1) lincRNA-intron (ENSMUSG00000098318.7, intron 1 of 1) -8591 ENSMUSG00000107730.1 ENSMUSG00000107730 ENSMUST00000203300 Gm44238 lincRNA Interval_105267 chr3 84355340 84356378 + 0 NA intron (ENSMUSG00000104004.1, intron 3 of 3) lincRNA-intron (ENSMUSG00000104004.1, intron 3 of 3) 24062 ENSMUSG00000104004.1 ENSMUSG00000104004 ENSMUST00000192777 4930565D16Rik lincRNA Interval_89002 chr2 14228732 14229278 + 0 NA promoter-TSS (ENSMUSG00000026712.3) protein_coding-promoter-TSS (ENSMUSG00000026712.3) -31998 ENSMUSG00000077897.1 ENSMUSG00000077897 ENSMUST00000104704 Mir511 miRNA Interval_167560 chr9 70475729 70477975 + 0 NA intron (ENSMUSG00000032217.13, intron 1 of 4) protein_coding-intron (ENSMUSG00000032217.13, intron 2 of 14) 1368 ENSMUSG00000065202.1 ENSMUSG00000065202 ENSMUST00000083268 Gm24615 snoRNA Interval_134683 chr6 30353775 30354056 + 0 NA Intergenic Intergenic -6449 ENSMUSG00000087846.1 ENSMUSG00000087846 ENSMUST00000157221 Gm25625 rRNA Interval_40233 chr12 102670620 102671412 + 0 NA intron (ENSMUSG00000057963.9, intron 2 of 4) protein_coding-intron (ENSMUSG00000057963.9, intron 2 of 9) 14004 ENSMUSG00000089324.1 ENSMUSG00000089324 ENSMUST00000158699 Mir1936 miRNA Interval_134633 chr6 30062324 30062978 + 0 NA intron (ENSMUSG00000058440.14, intron 1 of 2) protein_coding-intron (ENSMUSG00000058440.14, intron 1 of 11) -27244 ENSMUSG00000058440.14 ENSMUSG00000058440 ENSMUST00000132866 Nrf1 protein_coding Interval_95402 chr2 108333848 108334210 + 0 NA Intergenic Intergenic -42710 ENSMUSG00000086758.1 ENSMUSG00000086758 ENSMUST00000156541 Gm13912 lincRNA Interval_101479 chr2 181693166 181694840 + 0 NA promoter-TSS (ENSMUSG00000002458.13) protein_coding-promoter-TSS (ENSMUSG00000002458.13) -2186 ENSMUSG00000002458.13 ENSMUSG00000002458 ENSMUST00000130712 Rgs19 protein_coding Interval_44249 chr13 42915950 42916999 + 0 NA promoter-TSS (ENSMUSG00000054728.17) protein_coding-promoter-TSS (ENSMUSG00000054728.17) -177 ENSMUSG00000054728.17 ENSMUSG00000054728 ENSMUST00000161201 Phactr1 protein_coding Interval_7795 chr1 133740842 133742812 + 0 NA intron (ENSMUSG00000026463.17, intron 1 of 19) protein_coding-intron (ENSMUSG00000026463.17, intron 1 of 20) -15182 ENSMUSG00000098606.1 ENSMUSG00000098606 ENSMUST00000183597 Mir6903 miRNA Interval_22685 chr11 12989954 12990906 + 0 NA Intergenic Intergenic -7236 ENSMUSG00000084055.1 ENSMUSG00000084055 ENSMUST00000117869 Gm12004 processed_pseudogene Interval_118883 chr4 134249679 134250073 + 0 NA exon (ENSMUSG00000108398.1, exon 4 of 4) protein_coding-exon (ENSMUSG00000108398.1, exon 4 of 4) 2941 ENSMUSG00000108398.1 ENSMUSG00000108398 ENSMUST00000205501 Gm30191 protein_coding Interval_149929 chr7 102734062 102735186 + 0 NA promoter-TSS (ENSMUSG00000088888.1) snoRNA-promoter-TSS (ENSMUSG00000088888.1) 90 ENSMUSG00000088888.1 ENSMUSG00000088888 ENSMUST00000158263 Gm24210 snoRNA Interval_113791 chr4 58626884 58627542 + 0 NA Intergenic Intergenic 16155 ENSMUSG00000083145.1 ENSMUSG00000083145 ENSMUST00000118040 Gm12579 processed_pseudogene Interval_147852 chr7 74290710 74291138 + 0 NA intron (ENSMUSG00000025790.14, intron 9 of 10) protein_coding-intron (ENSMUSG00000025790.14, intron 9 of 9) 55366 ENSMUSG00000098303.1 ENSMUSG00000098303 ENSMUST00000184860 Gm27459 miRNA Interval_9006 chr1 153049852 153050414 + 0 NA intron (ENSMUSG00000042751.14, intron 1 of 1) protein_coding-intron (ENSMUSG00000042751.14, intron 1 of 10) 39374 ENSMUSG00000099969.1 ENSMUSG00000099969 ENSMUST00000190117 Gm28960 antisense Interval_88585 chr2 6380359 6380653 + 0 NA intron (ENSMUSG00000039046.15, intron 1 of 13) protein_coding-intron (ENSMUSG00000039046.15, intron 1 of 13) -40416 ENSMUSG00000039046.15 ENSMUSG00000039046 ENSMUST00000150515 Usp6nl protein_coding Interval_42818 chr13 19997050 19998182 + 0 NA Intergenic Intergenic -1812 ENSMUSG00000050243.6 ENSMUSG00000050243 ENSMUST00000091762 Gm5446 processed_pseudogene Interval_130273 chr5 125354676 125355678 + 0 NA Intergenic Intergenic -5998 ENSMUSG00000104932.1 ENSMUSG00000104932 ENSMUST00000200649 Gm40323 lincRNA Interval_100546 chr2 170054319 170056133 + 0 NA intron (ENSMUSG00000047907.11, intron 1 of 1) protein_coding-intron (ENSMUSG00000047907.11, intron 1 of 1) -92039 ENSMUSG00000103935.1 ENSMUSG00000103935 ENSMUST00000194482 AY702102 TEC Interval_13638 chr10 20337928 20338574 + 0 NA intron (ENSMUSG00000037608.16, intron 2 of 3) protein_coding-intron (ENSMUSG00000037608.16, intron 11 of 12) -9568 ENSMUSG00000019992.8 ENSMUSG00000019992 ENSMUST00000213374 Mtfr2 protein_coding Interval_73918 chr17 45478206 45478707 + 0 NA Intergenic Intergenic -3592 ENSMUSG00000023935.10 ENSMUSG00000023935 ENSMUST00000233583 Spats1 protein_coding Interval_51681 chr14 31327299 31327831 + 0 NA intron (ENSMUSG00000115468.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000115468.1, intron 1 of 1) -1559 ENSMUSG00000115445.1 ENSMUSG00000115445 ENSMUST00000226792 Gm49791 lincRNA Interval_63926 chr16 4607564 4608972 + 0 NA promoter-TSS (ENSMUSG00000014303.13) protein_coding-promoter-TSS (ENSMUSG00000014303.13) 7105 ENSMUSG00000014303.13 ENSMUSG00000014303 ENSMUST00000127120 Glis2 protein_coding Interval_81884 chr18 65605160 65606737 + 0 NA TTS (ENSMUSG00000103194.1) TEC-TTS (ENSMUSG00000103194.1) 2114 ENSMUSG00000103194.1 ENSMUSG00000103194 ENSMUST00000195369 Gm37643 TEC Interval_119041 chr4 135157873 135159421 + 0 NA intron (ENSMUSG00000070691.10, intron 2 of 4) protein_coding-intron (ENSMUSG00000070691.10, intron 3 of 5) 5709 ENSMUSG00000070691.10 ENSMUSG00000070691 ENSMUST00000127109 Runx3 protein_coding Interval_156762 chr8 58195367 58195641 + 0 NA intron (ENSMUSG00000096914.3, intron 5 of 12) protein_coding-intron (ENSMUSG00000096914.3, intron 5 of 12) -51083 ENSMUSG00000109963.1 ENSMUSG00000109963 ENSMUST00000211516 Gm45635 TEC Interval_72860 chr17 32741006 32741259 + 0 NA intron (ENSMUSG00000117443.1, intron 2 of 2) lincRNA-intron (ENSMUSG00000117443.1, intron 2 of 2) -4050 ENSMUSG00000117581.1 ENSMUSG00000117581 ENSMUST00000235016 Gm17948 processed_pseudogene Interval_50758 chr14 19196511 19197893 + 0 NA Intergenic Intergenic 37507 ENSMUSG00000091557.2 ENSMUSG00000091557 ENSMUST00000171982 Gm8584 unprocessed_pseudogene Interval_61480 chr15 81879972 81880269 + 0 NA intron (ENSMUSG00000022477.13, intron 1 of 2) protein_coding-intron (ENSMUSG00000022477.13, intron 1 of 17) 7430 ENSMUSG00000022477.13 ENSMUSG00000022477 ENSMUST00000144324 Aco2 protein_coding Interval_99434 chr2 161024469 161024768 + 0 NA intron (ENSMUSG00000057133.14, intron 10 of 16) protein_coding-intron (ENSMUSG00000057133.14, intron 10 of 36) 27841 ENSMUSG00000077795.1 ENSMUSG00000077795 ENSMUST00000104607 Gm25561 snoRNA Interval_49270 chr13 110018481 110020288 + 0 NA Intergenic Intergenic 115575 ENSMUSG00000084651.1 ENSMUSG00000084651 ENSMUST00000122702 Mir1904 miRNA Interval_66417 chr16 33742237 33742484 + 0 NA intron (ENSMUSG00000075254.12, intron 11 of 16) protein_coding-intron (ENSMUSG00000075254.12, intron 11 of 16) -51677 ENSMUSG00000022824.12 ENSMUSG00000022824 ENSMUST00000023520 Muc13 protein_coding Interval_160628 chr8 111170926 111171960 + 0 NA intron (ENSMUSG00000003316.14, intron 15 of 25) protein_coding-intron (ENSMUSG00000003316.14, intron 14 of 24) -23521 ENSMUSG00000076382.1 ENSMUSG00000076382 ENSMUST00000102427 Gm23193 miRNA Interval_83668 chr19 3587702 3588318 + 0 NA intron (ENSMUSG00000024913.16, intron 21 of 22) protein_coding-intron (ENSMUSG00000024913.16, intron 21 of 22) -12288 ENSMUSG00000024908.15 ENSMUSG00000024908 ENSMUST00000226109 Ppp6r3 protein_coding Interval_41447 chr12 114094239 114094458 + 0 NA promoter-TSS (ENSMUSG00000096805.2) IG_V_gene-promoter-TSS (ENSMUSG00000096805.2) 10 ENSMUSG00000096805.2 ENSMUSG00000096805 ENSMUST00000195884 Ighv9-1 IG_V_gene Interval_123188 chr5 30495233 30496082 + 0 NA intron (ENSMUSG00000053194.2, intron 4 of 6) protein_coding-intron (ENSMUSG00000053194.2, intron 4 of 6) 19027 ENSMUSG00000088327.1 ENSMUSG00000088327 ENSMUST00000157702 Gm25666 snRNA Interval_159856 chr8 104386827 104388185 + 0 NA intron (ENSMUSG00000096188.1, intron 1 of 3) protein_coding-intron (ENSMUSG00000096188.1, intron 1 of 3) 8301 ENSMUSG00000096188.1 ENSMUSG00000096188 ENSMUST00000179802 Cmtm4 protein_coding Interval_159514 chr8 95187020 95188053 + 0 NA intron (ENSMUSG00000031788.14, intron 1 of 4) protein_coding-intron (ENSMUSG00000031788.14, intron 1 of 4) 49226 ENSMUSG00000110475.1 ENSMUSG00000110475 ENSMUST00000212925 Gm31036 antisense Interval_110089 chr3 153223937 153224141 + 0 NA intron (ENSMUSG00000052544.9, intron 3 of 4) protein_coding-intron (ENSMUSG00000052544.9, intron 2 of 2) -41224 ENSMUSG00000105337.4 ENSMUSG00000105337 ENSMUST00000197695 1700094M23Rik lincRNA Interval_97705 chr2 143019709 143020037 + 0 NA Intergenic Intergenic -43188 ENSMUSG00000008333.12 ENSMUSG00000008333 ENSMUST00000134091 Snrpb2 protein_coding Interval_157128 chr8 65767039 65767253 + 0 NA intron (ENSMUSG00000036469.16, intron 1 of 7) protein_coding-intron (ENSMUSG00000036469.16, intron 1 of 7) 50449 ENSMUSG00000083905.1 ENSMUSG00000083905 ENSMUST00000118929 Gm15355 processed_pseudogene Interval_262 KZ289068.1 401937 405436 + 0 NA NA NA NA NA Interval_172403 chrX 17817732 17819498 + 0 NA Intergenic Intergenic 62891 ENSMUSG00000096716.1 ENSMUSG00000096716 ENSMUST00000152394 Gm5755 processed_pseudogene Interval_53739 chr14 61330320 61331546 + 0 NA TTS (ENSMUSG00000021928.9) protein_coding-TTS (ENSMUSG00000021928.9) -5123 ENSMUSG00000114642.1 ENSMUSG00000114642 ENSMUST00000223938 Gm5461 processed_pseudogene Interval_71474 chr17 24014611 24016729 + 0 NA Intergenic Intergenic 5638 ENSMUSG00000098964.1 ENSMUSG00000098964 ENSMUST00000185003 Gm27700 miRNA Interval_15832 chr10 57781630 57781913 + 0 NA promoter-TSS (ENSMUSG00000093552.1) processed_pseudogene-promoter-TSS (ENSMUSG00000093552.1) -583 ENSMUSG00000093552.1 ENSMUSG00000093552 ENSMUST00000177265 Gm5777 processed_pseudogene Interval_56578 chr14 120470157 120470803 + 0 NA Intergenic Intergenic -7964 ENSMUSG00000051615.14 ENSMUSG00000051615 ENSMUST00000062117 Rap2a protein_coding Interval_135326 chr6 38345936 38347026 + 0 NA intron (ENSMUSG00000029826.14, intron 1 of 11) protein_coding-intron (ENSMUSG00000029826.14, intron 1 of 8) 7792 ENSMUSG00000029826.14 ENSMUSG00000029826 ENSMUST00000114898 Zc3hav1 protein_coding Interval_166502 chr9 60161617 60161863 + 0 NA intron (ENSMUSG00000032289.15, intron 6 of 16) protein_coding-intron (ENSMUSG00000032289.15, intron 7 of 17) -119561 ENSMUSG00000088090.1 ENSMUSG00000088090 ENSMUST00000157465 Gm23668 rRNA Interval_84098 chr19 7195645 7198583 + 0 NA intron (ENSMUSG00000036278.7, intron 7 of 10) protein_coding-intron (ENSMUSG00000036278.7, intron 7 of 10) 8661 ENSMUSG00000024767.11 ENSMUSG00000024767 ENSMUST00000123743 Otub1 protein_coding Interval_61463 chr15 81784760 81785433 + 0 NA TTS (ENSMUSG00000022390.11) protein_coding-TTS (ENSMUSG00000022390.11) 9317 ENSMUSG00000022390.11 ENSMUSG00000022390 ENSMUST00000230590 Zc3h7b protein_coding Interval_63173 chr15 99549678 99550866 + 0 NA Intergenic Intergenic 5920 ENSMUSG00000096448.2 ENSMUSG00000096448 ENSMUST00000178090 Gm5808 processed_pseudogene Interval_99287 chr2 158682270 158683277 + 0 NA intron (ENSMUSG00000037754.13, intron 1 of 10) protein_coding-intron (ENSMUSG00000037754.13, intron 1 of 10) -13362 ENSMUSG00000037754.13 ENSMUSG00000037754 ENSMUST00000145073 Ppp1r16b protein_coding Interval_43236 chr13 26332614 26333991 + 0 NA Intergenic Intergenic -20896 ENSMUSG00000084811.2 ENSMUSG00000084811 ENSMUST00000123438 1700092E19Rik lincRNA Interval_160143 chr8 106690752 106691012 + 0 NA intron (ENSMUSG00000041949.6, intron 2 of 13) protein_coding-intron (ENSMUSG00000041949.6, intron 2 of 17) 7767 ENSMUSG00000041949.6 ENSMUSG00000041949 ENSMUST00000211979 Tango6 protein_coding Interval_128800 chr5 115340591 115342395 + 0 NA promoter-TSS (ENSMUSG00000029536.8) protein_coding-promoter-TSS (ENSMUSG00000029536.8) 268 ENSMUSG00000029535.4 ENSMUSG00000029535 ENSMUST00000031508 Triap1 protein_coding Interval_39789 chr12 98341891 98342410 + 0 NA Intergenic Intergenic -62489 ENSMUSG00000112510.1 ENSMUSG00000112510 ENSMUST00000218404 Gm47566 antisense Interval_154663 chr8 22432705 22435161 + 0 NA Intergenic Intergenic 22535 ENSMUSG00000031533.4 ENSMUSG00000031533 ENSMUST00000211083 Mrps31 protein_coding Interval_106336 chr3 95444322 95445786 + 0 NA intron (ENSMUSG00000015522.18, intron 1 of 16) protein_coding-intron (ENSMUSG00000015522.18, intron 1 of 21) -16137 ENSMUSG00000105395.1 ENSMUSG00000105395 ENSMUST00000197821 Gm42672 processed_pseudogene Interval_6930 chr1 120912158 120912987 + 0 NA Intergenic Intergenic 43576 ENSMUSG00000102360.1 ENSMUSG00000102360 ENSMUST00000194609 Gm37043 TEC Interval_50704 chr14 18360031 18360335 + 0 NA Intergenic Intergenic -28439 ENSMUSG00000021774.13 ENSMUSG00000021774 ENSMUST00000161580 Ube2e1 protein_coding Interval_146374 chr7 45575947 45576358 + 0 NA promoter-TSS (ENSMUSG00000109644.1) antisense-promoter-TSS (ENSMUSG00000109644.1) -1014 ENSMUSG00000109644.1 ENSMUSG00000109644 ENSMUST00000210965 0610005C13Rik antisense Interval_79215 chr18 25741868 25742498 + 0 NA intron (ENSMUSG00000024268.16, intron 1 of 12) protein_coding-intron (ENSMUSG00000024268.16, intron 1 of 12) 28413 ENSMUSG00000114511.1 ENSMUSG00000114511 ENSMUST00000224766 0710001A04Rik antisense Interval_35382 chr12 21194500 21195033 + 0 NA intron (ENSMUSG00000052632.16, intron 8 of 9) protein_coding-intron (ENSMUSG00000052632.16, intron 3 of 26) 52557 ENSMUSG00000118655.1 ENSMUSG00000118655 ENSMUST00000172962 AC156032.1 processed_transcript Interval_127480 chr5 104343077 104343399 + 0 NA Intergenic Intergenic 17909 ENSMUSG00000053863.3 ENSMUSG00000053863 ENSMUST00000066207 Mepe protein_coding Interval_172338 chrX 13185437 13185691 + 0 NA Intergenic Intergenic -3974 ENSMUSG00000094259.1 ENSMUSG00000094259 ENSMUST00000118324 Gm14536 unprocessed_pseudogene Interval_146126 chr7 44191012 44191522 + 0 NA intron (ENSMUSG00000063713.7, intron 2 of 4) protein_coding-intron (ENSMUSG00000063713.7, intron 2 of 4) 3031 ENSMUSG00000063713.7 ENSMUSG00000063713 ENSMUST00000073713 Klk1b24 protein_coding Interval_77160 chr17 86982450 86983203 + 0 NA intron (ENSMUSG00000024143.15, intron 3 of 4) protein_coding-intron (ENSMUSG00000024143.15, intron 2 of 4) -11769 ENSMUSG00000024143.15 ENSMUSG00000024143 ENSMUST00000234309 Rhoq protein_coding Interval_10166 chr1 166298150 166298623 + 0 NA intron (ENSMUSG00000040612.13, intron 6 of 8) protein_coding-intron (ENSMUSG00000040612.13, intron 6 of 9) 11199 ENSMUSG00000091393.1 ENSMUSG00000091393 ENSMUST00000168347 5330438I03Rik antisense Interval_128685 chr5 114702586 114703255 + 0 NA Intergenic Intergenic -11979 ENSMUSG00000011884.13 ENSMUSG00000011884 ENSMUST00000112212 Gltp protein_coding Interval_50135 chr14 8201845 8202199 + 0 NA Intergenic Intergenic -12480 ENSMUSG00000021752.13 ENSMUSG00000021752 ENSMUST00000170111 Kctd6 protein_coding Interval_139313 chr6 98576184 98576473 + 0 NA intron (ENSMUSG00000107614.1, intron 2 of 4) lincRNA-intron (ENSMUSG00000107614.1, intron 2 of 4) -24221 ENSMUSG00000107929.1 ENSMUSG00000107929 ENSMUST00000204069 4930595L18Rik lincRNA Interval_58817 chr15 38292716 38293515 + 0 NA intron (ENSMUSG00000037465.10, intron 4 of 4) protein_coding-intron (ENSMUSG00000037465.10, intron 4 of 4) 6680 ENSMUSG00000037465.10 ENSMUSG00000037465 ENSMUST00000228416 Klf10 protein_coding Interval_24614 chr11 35270897 35271355 + 0 NA intron (ENSMUSG00000056427.10, intron 2 of 3) protein_coding-intron (ENSMUSG00000056427.10, intron 4 of 35) 52544 ENSMUSG00000082309.3 ENSMUSG00000082309 ENSMUST00000120348 Gm12123 processed_pseudogene Interval_37053 chr12 57093122 57093346 + 0 NA intron (ENSMUSG00000035472.14, intron 1 of 9) protein_coding-intron (ENSMUSG00000035472.14, intron 1 of 9) 67409 ENSMUSG00000035472.14 ENSMUSG00000035472 ENSMUST00000160892 Slc25a21 protein_coding Interval_136023 chr6 49879999 49880610 + 0 NA Intergenic Intergenic -21458 ENSMUSG00000107664.1 ENSMUSG00000107664 ENSMUST00000205019 Gm18007 processed_pseudogene Interval_83040 chr18 80685174 80685374 + 0 NA intron (ENSMUSG00000033016.16, intron 2 of 7) protein_coding-intron (ENSMUSG00000033016.16, intron 2 of 7) -19916 ENSMUSG00000118265.1 ENSMUSG00000118265 ENSMUST00000237404 Gm50211 antisense Interval_87994 chr19 57645910 57646094 + 0 NA intron (ENSMUSG00000054843.9, intron 5 of 28) protein_coding-intron (ENSMUSG00000054843.9, intron 5 of 28) 34968 ENSMUSG00000054843.9 ENSMUSG00000054843 ENSMUST00000077282 Atrnl1 protein_coding Interval_133365 chr6 3874777 3876342 + 0 NA Intergenic Intergenic -12123 ENSMUSG00000108091.1 ENSMUSG00000108091 ENSMUST00000203552 Gm44221 processed_pseudogene Interval_87537 chr19 53321071 53321459 + 0 NA exon (ENSMUSG00000118369.1, exon 3 of 3) processed_transcript-exon (ENSMUSG00000118369.1, exon 3 of 3) 4478 ENSMUSG00000118369.1 ENSMUSG00000118369 ENSMUST00000237210 Gm30541 processed_transcript Interval_40204 chr12 102535889 102536291 + 0 NA Intergenic Intergenic -21978 ENSMUSG00000021194.6 ENSMUSG00000021194 ENSMUST00000223100 Chga protein_coding Interval_32118 chr11 105331818 105332705 + 0 NA TTS (ENSMUSG00000020695.14) protein_coding-TTS (ENSMUSG00000020695.14) -8571 ENSMUSG00000020695.14 ENSMUSG00000020695 ENSMUST00000151135 Mrc2 protein_coding Interval_13225 chr10 13219292 13219551 + 0 NA intron (ENSMUSG00000062866.16, intron 12 of 12) protein_coding-intron (ENSMUSG00000062866.16, intron 12 of 12) 14195 ENSMUSG00000112042.1 ENSMUSG00000112042 ENSMUST00000219030 Gm47402 processed_pseudogene Interval_26833 chr11 60930783 60932755 + 0 NA promoter-TSS (ENSMUSG00000018932.9) protein_coding-promoter-TSS (ENSMUSG00000018932.9) 98 ENSMUSG00000042549.10 ENSMUSG00000042549 ENSMUST00000123544 Map2k3os antisense Interval_98900 chr2 155892542 155892906 + 0 NA intron (ENSMUSG00000005882.18, intron 1 of 1) protein_coding-intron (ENSMUSG00000005882.18, intron 1 of 1) 37552 ENSMUSG00000005882.18 ENSMUSG00000005882 ENSMUST00000142655 Uqcc1 protein_coding Interval_42801 chr13 19664007 19664353 + 0 NA intron (ENSMUSG00000041138.16, intron 2 of 7) protein_coding-intron (ENSMUSG00000041138.16, intron 11 of 14) 9754 ENSMUSG00000114009.1 ENSMUSG00000114009 ENSMUST00000220524 Gm47606 TEC Interval_47993 chr13 94912889 94913322 + 0 NA Intergenic Intergenic 30505 ENSMUSG00000021685.11 ENSMUSG00000021685 ENSMUST00000184985 Otp protein_coding Interval_167015 chr9 64551676 64553159 + 0 NA intron (ENSMUSG00000036466.17, intron 1 of 1) protein_coding-intron (ENSMUSG00000036466.17, intron 5 of 24) 166791 ENSMUSG00000036466.17 ENSMUSG00000036466 ENSMUST00000153934 Megf11 protein_coding Interval_138727 chr6 91463114 91463524 + 0 NA exon (ENSMUSG00000034203.8, exon 3 of 3) protein_coding-exon (ENSMUSG00000034203.8, exon 3 of 3) 10130 ENSMUSG00000034203.8 ENSMUSG00000034203 ENSMUST00000205802 Chchd4 protein_coding Interval_141267 chr6 126739371 126740859 + 0 NA promoter-TSS (ENSMUSG00000038077.7) protein_coding-promoter-TSS (ENSMUSG00000038077.7) 559 ENSMUSG00000038077.7 ENSMUSG00000038077 ENSMUST00000112242 Kcna6 protein_coding Interval_158993 chr8 88537745 88538248 + 0 NA intron (ENSMUSG00000031661.12, intron 1 of 7) protein_coding-intron (ENSMUSG00000031661.12, intron 3 of 9) -22037 ENSMUSG00000110187.1 ENSMUSG00000110187 ENSMUST00000209918 Gm45496 TEC Interval_38294 chr12 76961658 76962944 + 0 NA promoter-TSS (ENSMUSG00000059436.13) protein_coding-promoter-TSS (ENSMUSG00000059436.13) -7892 ENSMUSG00000059436.13 ENSMUSG00000059436 ENSMUST00000219538 Max protein_coding Interval_155658 chr8 35723678 35725662 + 0 NA promoter-TSS (ENSMUSG00000109714.1) processed_transcript-promoter-TSS (ENSMUSG00000109714.1) 370 ENSMUSG00000109714.1 ENSMUSG00000109714 ENSMUST00000210105 Gm35021 processed_transcript Interval_81780 chr18 64627290 64627688 + 0 NA intron (ENSMUSG00000039529.9, intron 1 of 4) protein_coding-intron (ENSMUSG00000039529.9, intron 1 of 27) -14390 ENSMUSG00000118133.1 ENSMUSG00000118133 ENSMUST00000238142 Gm6978 transcribed_processed_pseudogene Interval_61087 chr15 79154981 79155962 + 0 NA TTS (ENSMUSG00000033006.10) protein_coding-TTS (ENSMUSG00000033006.10) 9015 ENSMUSG00000033006.10 ENSMUSG00000033006 ENSMUST00000230891 Sox10 protein_coding Interval_149636 chr7 100242052 100242507 + 0 NA intron (ENSMUSG00000030729.17, intron 1 of 4) protein_coding-intron (ENSMUSG00000030729.17, intron 1 of 14) 14603 ENSMUSG00000030729.17 ENSMUSG00000030729 ENSMUST00000054436 Pgm2l1 protein_coding Interval_58112 chr15 28017538 28018125 + 0 NA intron (ENSMUSG00000022263.10, intron 1 of 56) protein_coding-intron (ENSMUSG00000022263.10, intron 1 of 56) -22468 ENSMUSG00000022263.10 ENSMUSG00000022263 ENSMUST00000228950 Trio protein_coding Interval_98562 chr2 153252982 153253181 + 0 NA intron (ENSMUSG00000046020.13, intron 3 of 5) protein_coding-intron (ENSMUSG00000046020.13, intron 4 of 6) 11540 ENSMUSG00000046020.13 ENSMUSG00000046020 ENSMUST00000152390 Pofut1 protein_coding Interval_65700 chr16 25584310 25585660 + 0 NA Intergenic Intergenic -98780 ENSMUSG00000022510.14 ENSMUSG00000022510 ENSMUST00000115306 Trp63 protein_coding Interval_14299 chr10 30627308 30628803 + 0 NA TTS (ENSMUSG00000039697.16) protein_coding-TTS (ENSMUSG00000039697.16) -13503 ENSMUSG00000019791.12 ENSMUSG00000019791 ENSMUST00000214782 Hint3 protein_coding Interval_48499 chr13 99475353 99475598 + 0 NA intron (ENSMUSG00000052727.6, intron 2 of 6) protein_coding-intron (ENSMUSG00000052727.6, intron 2 of 6) 28964 ENSMUSG00000114282.1 ENSMUSG00000114282 ENSMUST00000223710 5330431K02Rik TEC Interval_165602 chr9 50167533 50167739 + 0 NA Intergenic Intergenic 19409 ENSMUSG00000098012.1 ENSMUSG00000098012 ENSMUST00000182240 Gm8907 processed_pseudogene Interval_28620 chr11 77240473 77240679 + 0 NA intron (ENSMUSG00000037926.15, intron 1 of 14) protein_coding-intron (ENSMUSG00000037926.15, intron 1 of 14) 4439 ENSMUSG00000077649.1 ENSMUSG00000077649 ENSMUST00000104461 Gm24989 snoRNA Interval_140824 chr6 121844510 121844720 + 0 NA intron (ENSMUSG00000059908.9, intron 2 of 2) protein_coding-intron (ENSMUSG00000059908.9, intron 4 of 35) 3511 ENSMUSG00000059908.9 ENSMUSG00000059908 ENSMUST00000204210 Mug1 protein_coding Interval_145742 chr7 37978647 37979288 + 0 NA intron (ENSMUSG00000030421.9, intron 4 of 10) protein_coding-intron (ENSMUSG00000030421.9, intron 4 of 10) 44584 ENSMUSG00000030421.9 ENSMUSG00000030421 ENSMUST00000206169 Uri1 protein_coding Interval_172379 chrX 15631410 15632246 + 0 NA Intergenic Intergenic 53563 ENSMUSG00000070258.1 ENSMUSG00000070258 ENSMUST00000093745 Gm25207 snRNA Interval_31346 chr11 100177036 100177693 + 0 NA Intergenic Intergenic 15882 ENSMUSG00000051617.3 ENSMUSG00000051617 ENSMUST00000059707 Krt9 protein_coding Interval_88719 chr2 9979149 9979399 + 0 NA intron (ENSMUSG00000025782.12, intron 2 of 6) protein_coding-intron (ENSMUSG00000025782.12, intron 2 of 6) -37523 ENSMUSG00000025782.12 ENSMUSG00000025782 ENSMUST00000114907 Taf3 protein_coding Interval_61433 chr15 81584687 81586755 + 0 NA promoter-TSS (ENSMUSG00000080527.1) miRNA-promoter-TSS (ENSMUSG00000080527.1) -412 ENSMUSG00000080527.1 ENSMUSG00000080527 ENSMUST00000116877 Gm23880 miRNA Interval_97130 chr2 131509716 131511129 + 0 NA intron (ENSMUSG00000027333.18, intron 1 of 1) protein_coding-intron (ENSMUSG00000027333.18, intron 1 of 6) 18479 ENSMUSG00000027333.18 ENSMUSG00000027333 ENSMUST00000151143 Smox protein_coding Interval_160692 chr8 111626051 111629262 + 0 NA intron (ENSMUSG00000031958.16, intron 2 of 3) protein_coding-intron (ENSMUSG00000031958.16, intron 8 of 10) 931 ENSMUSG00000031958.16 ENSMUSG00000031958 ENSMUST00000070004 Ldhd protein_coding Interval_62950 chr15 98114114 98115347 + 0 NA intron (ENSMUSG00000033065.14, intron 2 of 22) protein_coding-intron (ENSMUSG00000033065.14, intron 2 of 22) 21447 ENSMUSG00000097150.1 ENSMUSG00000097150 ENSMUST00000181802 Gm26513 antisense Interval_136194 chr6 51943102 51943464 + 0 NA intron (ENSMUSG00000059182.7, intron 4 of 12) protein_coding-intron (ENSMUSG00000059182.7, intron 4 of 12) -69318 ENSMUSG00000108244.1 ENSMUSG00000108244 ENSMUST00000203453 Gm44077 lincRNA Interval_34601 chr12 7424638 7425437 + 0 NA Intergenic Intergenic -6913 ENSMUSG00000112754.1 ENSMUSG00000112754 ENSMUST00000218817 Gm9139 processed_pseudogene Interval_61408 chr15 81399252 81400587 + 0 NA promoter-TSS (ENSMUSG00000022403.15) protein_coding-promoter-TSS (ENSMUSG00000022403.15) -278 ENSMUSG00000022401.12 ENSMUSG00000022401 ENSMUST00000167799 Xpnpep3 protein_coding Interval_49502 chr13 112477509 112477713 + 0 NA intron (ENSMUSG00000021756.12, intron 1 of 2) protein_coding-intron (ENSMUSG00000021756.12, intron 1 of 14) 2565 ENSMUSG00000021756.12 ENSMUSG00000021756 ENSMUST00000184949 Il6st protein_coding Interval_92739 chr2 64920998 64921644 + 0 NA intron (ENSMUSG00000026888.14, intron 9 of 13) protein_coding-intron (ENSMUSG00000026888.14, intron 9 of 13) -52733 ENSMUSG00000084104.1 ENSMUSG00000084104 ENSMUST00000120849 Gm13578 processed_pseudogene Interval_4743 chr1 78210208 78210635 + 0 NA Intergenic Intergenic 7055 ENSMUSG00000118426.1 ENSMUSG00000118426 ENSMUST00000238744 Gm2102 processed_pseudogene Interval_23025 chr11 19058865 19059221 + 0 NA Intergenic Intergenic -6233 ENSMUSG00000086025.1 ENSMUSG00000086025 ENSMUST00000144854 4933406G16Rik lincRNA Interval_17048 chr10 70857059 70858100 + 0 NA Intergenic Intergenic 10562 ENSMUSG00000112883.1 ENSMUSG00000112883 ENSMUST00000217694 Gm48023 lincRNA Interval_49583 chr13 113209574 113210169 + 0 NA exon (ENSMUSG00000042379.8, exon 1 of 3) protein_coding-exon (ENSMUSG00000042379.8, exon 1 of 3) 212 ENSMUSG00000042379.8 ENSMUSG00000042379 ENSMUST00000038144 Esm1 protein_coding Interval_9392 chr1 156752234 156752800 + 0 NA Intergenic Intergenic -40995 ENSMUSG00000046057.4 ENSMUSG00000046057 ENSMUST00000121352 Gm15428 processed_pseudogene Interval_74547 chr17 53245737 53246113 + 0 NA promoter-TSS (ENSMUSG00000117194.1) processed_pseudogene-promoter-TSS (ENSMUSG00000117194.1) -38 ENSMUSG00000117194.1 ENSMUSG00000117194 ENSMUST00000233695 Gm49913 processed_pseudogene Interval_17718 chr10 79732662 79733048 + 0 NA intron (ENSMUSG00000020331.9, intron 5 of 7) protein_coding-intron (ENSMUSG00000020331.9, intron 5 of 8) 13716 ENSMUSG00000020329.12 ENSMUSG00000020329 ENSMUST00000161375 Polrmt protein_coding Interval_33634 chr11 117650656 117651028 + 0 NA Intergenic Intergenic 39595 ENSMUSG00000054418.6 ENSMUSG00000054418 ENSMUST00000155384 2900041M22Rik processed_transcript Interval_49658 chr13 113838783 113839912 + 0 NA intron (ENSMUSG00000042348.10, intron 1 of 3) protein_coding-intron (ENSMUSG00000042348.10, intron 1 of 4) 44754 ENSMUSG00000042348.10 ENSMUSG00000042348 ENSMUST00000224068 Arl15 protein_coding Interval_164537 chr9 37978105 37978327 + 0 NA Intergenic Intergenic 9861 ENSMUSG00000110535.1 ENSMUSG00000110535 ENSMUST00000212344 Olfr880-ps1 unprocessed_pseudogene Interval_79447 chr18 31936625 31937267 + 0 NA promoter-TSS (ENSMUSG00000024395.9) protein_coding-promoter-TSS (ENSMUSG00000024395.9) -330 ENSMUSG00000024395.9 ENSMUSG00000024395 ENSMUST00000224328 Lims2 protein_coding Interval_39546 chr12 90058083 90058269 + 0 NA intron (ENSMUSG00000066392.12, intron 2 of 5) protein_coding-intron (ENSMUSG00000066392.12, intron 15 of 19) -9923 ENSMUSG00000113055.1 ENSMUSG00000113055 ENSMUST00000221188 Gm48700 TEC Interval_142 GL456387.1 5339 5611 + 0 NA NA NA NA NA Interval_80751 chr18 46817858 46818688 + 0 NA Intergenic Intergenic -31766 ENSMUSG00000024481.5 ENSMUSG00000024481 ENSMUST00000234519 Lvrn protein_coding Interval_4273 chr1 72309684 72310003 + 0 NA intron (ENSMUSG00000026187.9, intron 1 of 20) protein_coding-intron (ENSMUSG00000026187.9, intron 1 of 20) 2416 ENSMUSG00000026187.9 ENSMUSG00000026187 ENSMUST00000027379 Xrcc5 protein_coding Interval_134905 chr6 33405227 33405642 + 0 NA intron (ENSMUSG00000029763.17, intron 2 of 4) protein_coding-intron (ENSMUSG00000029763.17, intron 7 of 17) -27574 ENSMUSG00000107358.1 ENSMUSG00000107358 ENSMUST00000201039 Gm43168 TEC Interval_113688 chr4 57637709 57638332 + 0 NA promoter-TSS (ENSMUSG00000090053.9) protein_coding-promoter-TSS (ENSMUSG00000090053.9) 197 ENSMUSG00000089945.13 ENSMUSG00000089945 ENSMUST00000150412 Pakap protein_coding Interval_899 chr1 13069410 13070056 + 0 NA intron (ENSMUSG00000099498.1, intron 1 of 3) lincRNA-intron (ENSMUSG00000099498.1, intron 1 of 3) 895 ENSMUSG00000099498.1 ENSMUSG00000099498 ENSMUST00000187394 Gm29283 lincRNA Interval_159731 chr8 99634409 99634657 + 0 NA intron (ENSMUSG00000052479.5, intron 1 of 4) lincRNA-intron (ENSMUSG00000052479.5, intron 1 of 4) -29486 ENSMUSG00000083586.2 ENSMUSG00000083586 ENSMUST00000118240 Gm8688 unprocessed_pseudogene Interval_106899 chr3 101711752 101713616 + 0 NA Intergenic Intergenic 20895 ENSMUSG00000106070.1 ENSMUSG00000106070 ENSMUST00000196442 Gm43135 lincRNA Interval_127420 chr5 103817642 103818337 + 0 NA intron (ENSMUSG00000029313.18, intron 6 of 12) protein_coding-intron (ENSMUSG00000029313.18, intron 6 of 19) 56380 ENSMUSG00000029312.12 ENSMUSG00000029312 ENSMUST00000147184 Klhl8 protein_coding Interval_83735 chr19 4268708 4269378 + 0 NA promoter-TSS (ENSMUSG00000034616.17) protein_coding-promoter-TSS (ENSMUSG00000034616.17) -802 ENSMUSG00000034616.17 ENSMUSG00000034616 ENSMUST00000237790 Ssh3 protein_coding Interval_70853 chr17 15409463 15409682 + 0 NA TTS (ENSMUSG00000014763.8) protein_coding-TTS (ENSMUSG00000014763.8) 6168 ENSMUSG00000014763.8 ENSMUSG00000014763 ENSMUST00000231318 Fam120b protein_coding Interval_38104 chr12 75669013 75670185 + 0 NA promoter-TSS (ENSMUSG00000045690.8) protein_coding-promoter-TSS (ENSMUSG00000045690.8) -72 ENSMUSG00000045690.8 ENSMUSG00000045690 ENSMUST00000187307 Wdr89 protein_coding Interval_26891 chr11 61336626 61338028 + 0 NA intron (ENSMUSG00000069855.9, intron 2 of 2) protein_coding-intron (ENSMUSG00000069855.9, intron 3 of 16) 2566 ENSMUSG00000064718.1 ENSMUSG00000064718 ENSMUST00000082784 Gm25929 snRNA Interval_77210 chr17 87375845 87376758 + 0 NA intron (ENSMUSG00000036918.16, intron 18 of 18) protein_coding-intron (ENSMUSG00000036918.16, intron 19 of 19) -11839 ENSMUSG00000089755.1 ENSMUSG00000089755 ENSMUST00000159031 0610012D04Rik antisense Interval_149964 chr7 103860635 103861775 + 0 NA Intergenic Intergenic -7989 ENSMUSG00000052187.4 ENSMUSG00000052187 ENSMUST00000033229 Hbb-y protein_coding Interval_37824 chr12 72292796 72293938 + 0 NA intron (ENSMUSG00000021087.18, intron 3 of 8) protein_coding-intron (ENSMUSG00000021087.18, intron 3 of 8) -56819 ENSMUSG00000021087.18 ENSMUSG00000021087 ENSMUST00000221756 Rtn1 protein_coding Interval_54002 chr14 64309490 64309960 + 0 NA intron (ENSMUSG00000054733.9, intron 2 of 5) protein_coding-intron (ENSMUSG00000054733.9, intron 7 of 10) 107223 ENSMUSG00000054733.9 ENSMUSG00000054733 ENSMUST00000209513 Msra protein_coding Interval_158229 chr8 80149272 80149502 + 0 NA Intergenic Intergenic -10720 ENSMUSG00000109593.1 ENSMUSG00000109593 ENSMUST00000210143 Gm45431 lincRNA Interval_118982 chr4 134852566 134854349 + 0 NA promoter-TSS (ENSMUSG00000028826.14) protein_coding-promoter-TSS (ENSMUSG00000028826.14) -26353 ENSMUSG00000028825.7 ENSMUSG00000028825 ENSMUST00000136163 Rhd protein_coding Interval_42847 chr13 20311330 20312517 + 0 NA intron (ENSMUSG00000041112.17, intron 5 of 6) protein_coding-intron (ENSMUSG00000041112.17, intron 13 of 21) 29006 ENSMUSG00000041112.17 ENSMUSG00000041112 ENSMUST00000180767 Elmo1 protein_coding Interval_166322 chr9 58325904 58326307 + 0 NA Intergenic Intergenic -12919 ENSMUSG00000032334.10 ENSMUSG00000032334 ENSMUST00000061799 Loxl1 protein_coding Interval_133274 chr5 151023127 151023873 + 0 NA Intergenic Intergenic -14199 ENSMUSG00000106963.1 ENSMUSG00000106963 ENSMUST00000201408 Gm8675 processed_pseudogene Interval_129659 chr5 121583563 121584719 + 0 NA intron (ENSMUSG00000029455.14, intron 1 of 4) protein_coding-intron (ENSMUSG00000029455.14, intron 1 of 12) -9554 ENSMUSG00000106590.1 ENSMUSG00000106590 ENSMUST00000198656 Gm42879 TEC Interval_18114 chr10 82751023 82751375 + 0 NA TTS (ENSMUSG00000020248.18) protein_coding-TTS (ENSMUSG00000020248.18) 460 ENSMUSG00000020248.18 ENSMUSG00000020248 ENSMUST00000128397 Nfyb protein_coding Interval_120474 chr4 148846451 148846967 + 0 NA intron (ENSMUSG00000028977.17, intron 2 of 20) protein_coding-intron (ENSMUSG00000028977.17, intron 2 of 15) 67615 ENSMUSG00000086766.1 ENSMUSG00000086766 ENSMUST00000151967 Gm15969 antisense Interval_82194 chr18 68794403 68794957 + 0 NA exon (ENSMUSG00000118102.1, exon 3 of 3) lincRNA-exon (ENSMUSG00000118102.1, exon 3 of 3) 10678 ENSMUSG00000118102.1 ENSMUSG00000118102 ENSMUST00000237657 Gm50260 lincRNA Interval_41869 chr13 3694862 3695266 + 0 NA Intergenic Intergenic 46527 ENSMUSG00000088475.1 ENSMUSG00000088475 ENSMUST00000157850 Gm23084 rRNA Interval_146992 chr7 57384045 57384561 + 0 NA intron (ENSMUSG00000055026.13, intron 1 of 2) protein_coding-intron (ENSMUSG00000055026.13, intron 1 of 3) 2885 ENSMUSG00000055026.13 ENSMUSG00000055026 ENSMUST00000171965 Gabrg3 protein_coding Interval_173027 chrX 65778510 65779935 + 0 NA Intergenic Intergenic -157127 ENSMUSG00000083243.1 ENSMUSG00000083243 ENSMUST00000118588 Gm14668 processed_pseudogene Interval_103399 chr3 41228418 41228774 + 0 NA Intergenic Intergenic -55933 ENSMUSG00000105258.1 ENSMUSG00000105258 ENSMUST00000197878 Gm40038 lincRNA Interval_122251 chr5 20676276 20678951 + 0 NA intron (ENSMUSG00000040003.18, intron 5 of 5) protein_coding-intron (ENSMUSG00000040003.18, intron 22 of 22) -24664 ENSMUSG00000073174.6 ENSMUSG00000073174 ENSMUST00000189302 Gm29254 3prime_overlapping_ncRNA Interval_74284 chr17 47887276 47888697 + 0 NA TTS (ENSMUSG00000023991.16) protein_coding-TTS (ENSMUSG00000023991.16) -9033 ENSMUSG00000023991.16 ENSMUSG00000023991 ENSMUST00000153752 Foxp4 protein_coding Interval_148770 chr7 86641284 86641951 + 0 NA Intergenic Intergenic -7444 ENSMUSG00000063394.3 ENSMUSG00000063394 ENSMUST00000081474 Olfr293 protein_coding Interval_23922 chr11 28365059 28366744 + 0 NA Intergenic Intergenic 5539 ENSMUSG00000084905.1 ENSMUSG00000084905 ENSMUST00000152849 Gm12081 antisense Interval_118990 chr4 134883105 134884025 + 0 NA intron (ENSMUSG00000028825.7, intron 1 of 4) protein_coding-intron (ENSMUSG00000028825.7, intron 3 of 9) 3755 ENSMUSG00000028825.7 ENSMUSG00000028825 ENSMUST00000136163 Rhd protein_coding Interval_113724 chr4 57861063 57861768 + 0 NA intron (ENSMUSG00000038729.24, intron 2 of 2) protein_coding-intron (ENSMUSG00000038729.24, intron 1 of 3) 16080 ENSMUSG00000096195.1 ENSMUSG00000096195 ENSMUST00000179236 Gm26138 snRNA Interval_59735 chr15 58961595 58963141 + 0 NA intron (ENSMUSG00000022353.10, intron 4 of 7) protein_coding-intron (ENSMUSG00000022353.10, intron 7 of 14) -21768 ENSMUSG00000115062.1 ENSMUSG00000115062 ENSMUST00000226216 4930544F09Rik antisense Interval_6419 chr1 107598287 107598761 + 0 NA intron (ENSMUSG00000026315.13, intron 2 of 5) protein_coding-intron (ENSMUSG00000026315.13, intron 2 of 6) 8478 ENSMUSG00000026315.13 ENSMUSG00000026315 ENSMUST00000123086 Serpinb8 protein_coding Interval_146636 chr7 48952872 48953120 + 0 NA intron (ENSMUSG00000052512.17, intron 4 of 4) protein_coding-intron (ENSMUSG00000052512.17, intron 4 of 4) -12878 ENSMUSG00000109507.1 ENSMUSG00000109507 ENSMUST00000208249 Gm18559 processed_pseudogene Interval_73853 chr17 44620887 44621186 + 0 NA intron (ENSMUSG00000039153.17, intron 3 of 4) protein_coding-intron (ENSMUSG00000039153.17, intron 6 of 7) 20107 ENSMUSG00000070209.1 ENSMUSG00000070209 ENSMUST00000093699 n-R5s27 rRNA Interval_145803 chr7 39446062 39446436 + 0 NA promoter-TSS (ENSMUSG00000046372.4) transcribed_processed_pseudogene-promoter-TSS (ENSMUSG00000046372.4) 2972 ENSMUSG00000046372.4 ENSMUSG00000046372 ENSMUST00000186976 Gm5590 transcribed_processed_pseudogene Interval_106960 chr3 102197901 102198104 + 0 NA promoter-TSS (ENSMUSG00000027860.15) protein_coding-promoter-TSS (ENSMUSG00000027860.15) -5954 ENSMUSG00000089916.1 ENSMUSG00000089916 ENSMUST00000160105 Gm16160 antisense Interval_63297 chr15 100163722 100164226 + 0 NA intron (ENSMUSG00000023026.16, intron 1 of 1) protein_coding-intron (ENSMUSG00000023026.16, intron 7 of 32) 1247 ENSMUSG00000023026.16 ENSMUSG00000023026 ENSMUST00000135658 Dip2b protein_coding Interval_123539 chr5 33347500 33347967 + 0 NA intron (ENSMUSG00000079562.7, intron 2 of 3) protein_coding-intron (ENSMUSG00000079562.7, intron 1 of 8) -14838 ENSMUSG00000079562.7 ENSMUSG00000079562 ENSMUST00000202839 Maea protein_coding Interval_108420 chr3 126944701 126945042 + 0 NA exon (ENSMUSG00000032826.19, exon 38 of 46) protein_coding-exon (ENSMUSG00000032826.19, exon 38 of 46) 22648 ENSMUSG00000105469.1 ENSMUSG00000105469 ENSMUST00000196018 A930036I15Rik TEC Interval_25640 chr11 50358765 50359941 + 0 NA exon (ENSMUSG00000050087.3, exon 2 of 2) protein_coding-exon (ENSMUSG00000050087.3, exon 2 of 2) -1474 ENSMUSG00000076450.1 ENSMUSG00000076450 ENSMUST00000103251 Mir804 miRNA Interval_154303 chr8 14195860 14196435 + 0 NA intron (ENSMUSG00000047495.15, intron 1 of 13) protein_coding-intron (ENSMUSG00000047495.15, intron 1 of 14) 59837 ENSMUSG00000085371.1 ENSMUSG00000085371 ENSMUST00000128343 Gm3160 processed_pseudogene Interval_121717 chr5 5684629 5685393 + 0 NA intron (ENSMUSG00000015653.13, intron 1 of 3) protein_coding-intron (ENSMUSG00000015653.13, intron 1 of 5) -1948 ENSMUSG00000015653.13 ENSMUSG00000015653 ENSMUST00000150238 Steap2 protein_coding Interval_140803 chr6 121472982 121473957 + 0 NA exon (ENSMUSG00000040797.16, exon 1 of 14) protein_coding-exon (ENSMUSG00000040797.16, exon 1 of 14) 196 ENSMUSG00000040797.16 ENSMUSG00000040797 ENSMUST00000151397 Iqsec3 protein_coding Interval_45709 chr13 57184739 57185057 + 0 NA Intergenic Intergenic -54949 ENSMUSG00000114363.1 ENSMUSG00000114363 ENSMUST00000225562 Gm48174 processed_pseudogene Interval_78100 chr18 8086675 8086984 + 0 NA Intergenic Intergenic 35626 ENSMUSG00000117428.1 ENSMUSG00000117428 ENSMUST00000235002 Gm4833 processed_pseudogene Interval_153452 chr7 144874952 144875524 + 0 NA Intergenic Intergenic -21303 ENSMUSG00000031073.6 ENSMUSG00000031073 ENSMUST00000207229 Fgf15 protein_coding Interval_112861 chr4 45591019 45593750 + 0 NA Intergenic Intergenic 42367 ENSMUSG00000081559.3 ENSMUSG00000081559 ENSMUST00000119140 Gm12411 processed_pseudogene Interval_118315 chr4 130251007 130253383 + 0 NA Intergenic Intergenic 23350 ENSMUSG00000023232.17 ENSMUSG00000023232 ENSMUST00000154846 Serinc2 protein_coding Interval_67530 chr16 50374453 50375071 + 0 NA intron (ENSMUSG00000022641.15, intron 2 of 16) protein_coding-intron (ENSMUSG00000022641.15, intron 2 of 15) 57547 ENSMUSG00000022641.15 ENSMUSG00000022641 ENSMUST00000130210 Bbx protein_coding Interval_149674 chr7 100554988 100555947 + 0 NA intron (ENSMUSG00000030706.17, intron 5 of 7) protein_coding-intron (ENSMUSG00000030706.17, intron 4 of 6) -12287 ENSMUSG00000109123.1 ENSMUSG00000109123 ENSMUST00000209160 Gm39059 lincRNA Interval_7176 chr1 127483745 127485120 + 0 NA TTS (ENSMUSG00000036155.13) protein_coding-TTS (ENSMUSG00000036155.13) 77656 ENSMUSG00000103390.1 ENSMUSG00000103390 ENSMUST00000195573 Gm38301 TEC Interval_122290 chr5 20968160 20969279 + 0 NA Intergenic Intergenic 17730 ENSMUSG00000101013.1 ENSMUSG00000101013 ENSMUST00000190567 A630072M18Rik antisense Interval_104855 chr3 76008686 76010120 + 0 NA Intergenic Intergenic 32320 ENSMUSG00000104223.1 ENSMUSG00000104223 ENSMUST00000194986 Gm18428 processed_pseudogene Interval_48600 chr13 100593727 100594621 + 0 NA Intergenic Intergenic -10185 ENSMUSG00000065678.1 ENSMUSG00000065678 ENSMUST00000083744 Gm24261 snRNA Interval_115381 chr4 98395595 98396755 + 0 NA intron (ENSMUSG00000061859.17, intron 1 of 44) protein_coding-intron (ENSMUSG00000061859.17, intron 1 of 43) 384 ENSMUSG00000061859.17 ENSMUSG00000061859 ENSMUST00000030290 Patj protein_coding Interval_103709 chr3 51796587 51796783 + 0 NA promoter-TSS (ENSMUSG00000061143.15) protein_coding-promoter-TSS (ENSMUSG00000061143.15) -111 ENSMUSG00000061143.15 ENSMUSG00000061143 ENSMUST00000193568 Maml3 protein_coding Interval_97098 chr2 131209747 131210774 + 0 NA promoter-TSS (ENSMUSG00000068264.11) protein_coding-promoter-TSS (ENSMUSG00000068264.11) -137 ENSMUSG00000068264.11 ENSMUSG00000068264 ENSMUST00000110206 Ap5s1 protein_coding Interval_26037 chr11 53620862 53621403 + 0 NA Intergenic Intergenic -3794 ENSMUSG00000000869.12 ENSMUSG00000000869 ENSMUST00000000889 Il4 protein_coding Interval_113536 chr4 55708601 55709047 + 0 NA Intergenic Intergenic 103675 ENSMUSG00000085375.1 ENSMUSG00000085375 ENSMUST00000123620 Gm12506 lincRNA Interval_167851 chr9 73067308 73068694 + 0 NA intron (ENSMUSG00000032202.11, intron 2 of 6) protein_coding-intron (ENSMUSG00000032202.11, intron 1 of 5) 7050 ENSMUSG00000098468.1 ENSMUSG00000098468 ENSMUST00000184223 Gm27186 processed_pseudogene Interval_112905 chr4 45928577 45928812 + 0 NA intron (ENSMUSG00000035539.14, intron 26 of 37) protein_coding-intron (ENSMUSG00000035539.14, intron 22 of 33) 38391 ENSMUSG00000035539.14 ENSMUSG00000035539 ENSMUST00000151024 Ccdc180 protein_coding Interval_27996 chr11 72050473 72053216 + 0 NA exon (ENSMUSG00000040543.16, exon 19 of 20) protein_coding-exon (ENSMUSG00000040543.16, exon 19 of 20) 9320 ENSMUSG00000020808.3 ENSMUSG00000020808 ENSMUST00000125655 Pimreg protein_coding Interval_79930 chr18 36010453 36010938 + 0 NA exon (ENSMUSG00000024347.16, exon 14 of 15) protein_coding-exon (ENSMUSG00000024347.16, exon 14 of 15) 45628 ENSMUSG00000024347.16 ENSMUSG00000024347 ENSMUST00000175720 Psd2 protein_coding Interval_174390 chrX 151055563 151055784 + 0 NA intron (ENSMUSG00000025265.14, intron 1 of 17) protein_coding-intron (ENSMUSG00000025265.14, intron 1 of 17) -30437 ENSMUSG00000025265.14 ENSMUSG00000025265 ENSMUST00000125620 Fgd1 protein_coding Interval_140450 chr6 118302055 118303046 + 0 NA intron (ENSMUSG00000107933.1, intron 3 of 4) lincRNA-intron (ENSMUSG00000107933.1, intron 3 of 4) 5834 ENSMUSG00000107933.1 ENSMUSG00000107933 ENSMUST00000204033 Gm30498 lincRNA Interval_89957 chr2 26841782 26842268 + 0 NA TTS (ENSMUSG00000015787.15) protein_coding-TTS (ENSMUSG00000015787.15) 14773 ENSMUSG00000015787.15 ENSMUSG00000015787 ENSMUST00000102900 Abo protein_coding Interval_63377 chr15 100684723 100685682 + 0 NA promoter-TSS (ENSMUSG00000023031.8) protein_coding-promoter-TSS (ENSMUSG00000023031.8) -6136 ENSMUSG00000023031.8 ENSMUSG00000023031 ENSMUST00000230642 Cela1 protein_coding Interval_107877 chr3 116512686 116513628 + 0 NA promoter-TSS (ENSMUSG00000000340.10) protein_coding-promoter-TSS (ENSMUSG00000000340.10) 29 ENSMUSG00000000340.10 ENSMUSG00000000340 ENSMUST00000196376 Dbt protein_coding Interval_30538 chr11 95006095 95006934 + 0 NA exon (ENSMUSG00000038976.12, exon 10 of 10) protein_coding-exon (ENSMUSG00000038976.12, exon 10 of 10) -3368 ENSMUSG00000047181.12 ENSMUSG00000047181 ENSMUST00000124735 Samd14 protein_coding Interval_129156 chr5 117896919 117898663 + 0 NA exon (ENSMUSG00000029361.18, exon 7 of 29) protein_coding-exon (ENSMUSG00000029361.18, exon 7 of 29) 24978 ENSMUSG00000104071.1 ENSMUSG00000104071 ENSMUST00000194276 Gm37028 TEC Interval_117216 chr4 120665315 120667493 + 0 NA promoter-TSS (ENSMUSG00000070803.6) protein_coding-promoter-TSS (ENSMUSG00000070803.6) -168 ENSMUSG00000070803.6 ENSMUSG00000070803 ENSMUST00000094814 Cited4 protein_coding Interval_70653 chr17 12831685 12832309 + 0 NA intron (ENSMUSG00000078247.5, intron 1 of 2) antisense-intron (ENSMUSG00000078247.5, intron 1 of 2) -11155 ENSMUSG00000089817.1 ENSMUSG00000089817 ENSMUST00000161205 Gm7162 processed_pseudogene Interval_133940 chr6 15961273 15961462 + 0 NA Intergenic Intergenic 125278 ENSMUSG00000108048.1 ENSMUSG00000108048 ENSMUST00000203790 Gm43990 TEC Interval_103729 chr3 52104792 52105352 + 0 NA promoter-TSS (ENSMUSG00000061143.15) protein_coding-promoter-TSS (ENSMUSG00000061143.15) -31685 ENSMUSG00000102808.1 ENSMUSG00000102808 ENSMUST00000194956 5430420F09Rik TEC Interval_90304 chr2 29678121 29678335 + 0 NA intron (ENSMUSG00000039844.20, intron 1 of 23) protein_coding-intron (ENSMUSG00000039844.20, intron 1 of 25) 34413 ENSMUSG00000039844.20 ENSMUSG00000039844 ENSMUST00000123953 Rapgef1 protein_coding Interval_127763 chr5 107513579 107514021 + 0 NA intron (ENSMUSG00000106631.2, intron 1 of 5) protein_coding-intron (ENSMUSG00000106631.2, intron 1 of 3) 4856 ENSMUSG00000106631.2 ENSMUSG00000106631 ENSMUST00000160160 Gm42669 protein_coding Interval_112180 chr4 35257601 35259115 + 0 NA intron (ENSMUSG00000084828.1, intron 1 of 1) processed_transcript-intron (ENSMUSG00000084828.1, intron 1 of 1) -32183 ENSMUSG00000028300.14 ENSMUSG00000028300 ENSMUST00000149138 C9orf72 protein_coding Interval_166739 chr9 62351310 62351775 + 0 NA intron (ENSMUSG00000032249.14, intron 1 of 4) protein_coding-intron (ENSMUSG00000032249.14, intron 1 of 6) 9078 ENSMUSG00000032249.14 ENSMUSG00000032249 ENSMUST00000145679 Anp32a protein_coding Interval_64063 chr16 6964695 6965900 + 0 NA intron (ENSMUSG00000008658.16, intron 4 of 11) protein_coding-intron (ENSMUSG00000008658.16, intron 3 of 14) -228450 ENSMUSG00000008658.16 ENSMUSG00000008658 ENSMUST00000231031 Rbfox1 protein_coding Interval_21335 chr10 128049804 128050439 + 0 NA Intergenic Intergenic 14486 ENSMUSG00000061315.14 ENSMUSG00000061315 ENSMUST00000092048 Naca protein_coding Interval_65671 chr16 25019539 25020223 + 0 NA Intergenic Intergenic -39758 ENSMUSG00000096960.1 ENSMUSG00000096960 ENSMUST00000181655 A230028O05Rik lincRNA Interval_23050 chr11 19341797 19342152 + 0 NA Intergenic Intergenic 19095 ENSMUSG00000081054.1 ENSMUSG00000081054 ENSMUST00000117768 Gm12025 processed_pseudogene Interval_152296 chr7 131541798 131544590 + 0 NA exon (ENSMUSG00000040148.5, exon 1 of 2) protein_coding-exon (ENSMUSG00000040148.5, exon 1 of 2) 327 ENSMUSG00000040148.5 ENSMUSG00000040148 ENSMUST00000046093 Hmx3 protein_coding Interval_152007 chr7 128208064 128208661 + 0 NA intron (ENSMUSG00000070369.13, intron 2 of 2) protein_coding-intron (ENSMUSG00000070369.13, intron 2 of 2) -1975 ENSMUSG00000030785.8 ENSMUSG00000030785 ENSMUST00000033049 Cox6a2 protein_coding Interval_144544 chr7 25802227 25803736 + 0 NA exon (ENSMUSG00000040703.11, exon 9 of 9) protein_coding-exon (ENSMUSG00000040703.11, exon 9 of 9) -7194 ENSMUSG00000108691.1 ENSMUSG00000108691 ENSMUST00000206602 Gm45226 processed_pseudogene Interval_66082 chr16 31473183 31473696 + 0 NA intron (ENSMUSG00000116572.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000116572.1, intron 1 of 1) 3513 ENSMUSG00000116572.1 ENSMUSG00000116572 ENSMUST00000232608 Gm49695 lincRNA Interval_34474 chr12 4518824 4519260 + 0 NA intron (ENSMUSG00000111938.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000111938.1, intron 1 of 1) -5071 ENSMUSG00000112422.1 ENSMUSG00000112422 ENSMUST00000218081 Gm31938 lincRNA Interval_27875 chr11 70557561 70557786 + 0 NA TTS (ENSMUSG00000020828.13) protein_coding-TTS (ENSMUSG00000020828.13) 3713 ENSMUSG00000020828.13 ENSMUSG00000020828 ENSMUST00000146248 Pld2 protein_coding Interval_6562 chr1 116792693 116792887 + 0 NA Intergenic Intergenic -10193 ENSMUSG00000094429.2 ENSMUSG00000094429 ENSMUST00000179777 Gm19965 protein_coding Interval_94723 chr2 93772148 93772828 + 0 NA intron (ENSMUSG00000027198.16, intron 8 of 11) protein_coding-intron (ENSMUSG00000027198.16, intron 7 of 13) -22082 ENSMUSG00000081353.2 ENSMUSG00000081353 ENSMUST00000119441 Gm13818 processed_pseudogene Interval_112368 chr4 40868511 40869531 + 0 NA Intergenic Intergenic -15016 ENSMUSG00000028413.13 ENSMUSG00000028413 ENSMUST00000108096 B4galt1 protein_coding Interval_87398 chr19 48765108 48765737 + 0 NA intron (ENSMUSG00000063434.6, intron 7 of 15) protein_coding-intron (ENSMUSG00000063434.6, intron 18 of 26) -45714 ENSMUSG00000117930.1 ENSMUSG00000117930 ENSMUST00000236384 Gm50436 TEC Interval_116972 chr4 118568979 118569737 + 0 NA exon (ENSMUSG00000028730.14, exon 21 of 23) protein_coding-exon (ENSMUSG00000028730.14, exon 21 of 23) -26069 ENSMUSG00000050854.9 ENSMUSG00000050854 ENSMUST00000154025 Tmem125 protein_coding Interval_77126 chr17 86750848 86752005 + 0 NA Intergenic Intergenic -21844 ENSMUSG00000117538.1 ENSMUSG00000117538 ENSMUST00000234482 Gm50008 TEC Interval_70606 chr17 12259266 12259492 + 0 NA intron (ENSMUSG00000014426.9, intron 6 of 25) protein_coding-intron (ENSMUSG00000014426.9, intron 6 of 26) -20738 ENSMUSG00000117325.1 ENSMUSG00000117325 ENSMUST00000233669 Gm49962 processed_pseudogene Interval_106402 chr3 95954675 95954997 + 0 NA Intergenic Intergenic 9552 ENSMUSG00000106640.1 ENSMUSG00000106640 ENSMUST00000197308 Gm20940 processed_pseudogene Interval_52063 chr14 34980278 34981613 + 0 NA intron (ENSMUSG00000041078.7, intron 3 of 15) protein_coding-intron (ENSMUSG00000041078.7, intron 3 of 15) 86336 ENSMUSG00000065481.1 ENSMUSG00000065481 ENSMUST00000083547 Mir346 miRNA Interval_125563 chr5 71388605 71389620 + 0 NA Intergenic Intergenic 159093 ENSMUSG00000049387.10 ENSMUSG00000049387 ENSMUST00000050129 Cox7b2 protein_coding Interval_20939 chr10 122527468 122528337 + 0 NA intron (ENSMUSG00000112873.1, intron 1 of 2) antisense-intron (ENSMUSG00000112873.1, intron 1 of 2) 18596 ENSMUSG00000112873.1 ENSMUSG00000112873 ENSMUST00000218285 Gm48877 antisense Interval_41463 chr12 114469285 114469492 + 0 NA promoter-TSS (ENSMUSG00000105438.1) miRNA-promoter-TSS (ENSMUSG00000105438.1) 78 ENSMUSG00000105438.1 ENSMUSG00000105438 ENSMUST00000199671 Mir7094-1 miRNA Interval_18671 chr10 89009910 89010228 + 0 NA intron (ENSMUSG00000035189.17, intron 13 of 26) protein_coding-intron (ENSMUSG00000035189.17, intron 14 of 27) 124077 ENSMUSG00000020062.7 ENSMUSG00000020062 ENSMUST00000020255 Slc5a8 protein_coding Interval_125535 chr5 69381137 69381878 + 0 NA Intergenic Intergenic 4665 ENSMUSG00000096290.1 ENSMUSG00000096290 ENSMUST00000082914 Gm23932 snRNA Interval_104036 chr3 57582702 57584229 + 0 NA Intergenic Intergenic -7555 ENSMUSG00000027803.14 ENSMUSG00000027803 ENSMUST00000120977 Wwtr1 protein_coding Interval_148606 chr7 83139860 83140057 + 0 NA intron (ENSMUSG00000053528.6, intron 1 of 3) lincRNA-intron (ENSMUSG00000053528.6, intron 1 of 3) 55577 ENSMUSG00000053528.6 ENSMUSG00000053528 ENSMUST00000208111 A530021J07Rik lincRNA Interval_55987 chr14 103696676 103697228 + 0 NA exon (ENSMUSG00000089707.1, exon 2 of 3) antisense-exon (ENSMUSG00000089707.1, exon 2 of 3) 2490 ENSMUSG00000089707.1 ENSMUSG00000089707 ENSMUST00000160117 Slain1os antisense Interval_143348 chr7 6044778 6045210 + 0 NA promoter-TSS (ENSMUSG00000034690.13) protein_coding-promoter-TSS (ENSMUSG00000034690.13) -2044 ENSMUSG00000109283.1 ENSMUSG00000109283 ENSMUST00000208067 Gm44733 lincRNA Interval_2334 chr1 38140923 38142005 + 0 NA intron (ENSMUSG00000102716.1, intron 1 of 5) lincRNA-intron (ENSMUSG00000102716.1, intron 1 of 5) 9381 ENSMUSG00000102716.1 ENSMUSG00000102716 ENSMUST00000194892 Gm5099 lincRNA Interval_145069 chr7 29861649 29861908 + 0 NA exon (ENSMUSG00000058402.14, exon 2 of 2) protein_coding-intron (ENSMUSG00000058402.14, intron 2 of 3) 1774 ENSMUSG00000058402.14 ENSMUSG00000058402 ENSMUST00000130272 Zfp420 protein_coding Interval_43833 chr13 37466306 37466516 + 0 NA Intergenic Intergenic -5627 ENSMUSG00000114701.1 ENSMUSG00000114701 ENSMUST00000225986 Gm47731 lincRNA Interval_148822 chr7 88599057 88599301 + 0 NA Intergenic Intergenic -26330 ENSMUSG00000098174.1 ENSMUSG00000098174 ENSMUST00000183134 Gm8183 processed_pseudogene Interval_23038 chr11 19160868 19161143 + 0 NA Intergenic Intergenic -43571 ENSMUSG00000102585.1 ENSMUSG00000102585 ENSMUST00000193150 Gm37439 TEC Interval_48230 chr13 97319375 97319797 + 0 NA Intergenic Intergenic 36403 ENSMUSG00000097932.2 ENSMUSG00000097932 ENSMUST00000181148 C430039J16Rik lincRNA Interval_127679 chr5 106582481 106582685 + 0 NA intron (ENSMUSG00000098302.1, intron 2 of 2) processed_transcript-intron (ENSMUSG00000098302.1, intron 2 of 2) 7708 ENSMUSG00000101237.1 ENSMUSG00000101237 ENSMUST00000187692 Gm29464 lincRNA Interval_76754 chr17 83850034 83850749 + 0 NA Intergenic Intergenic -3602 ENSMUSG00000000673.9 ENSMUSG00000000673 ENSMUST00000234312 Haao protein_coding Interval_77705 chr17 94518969 94519484 + 0 NA Intergenic Intergenic -88959 ENSMUSG00000117476.1 ENSMUSG00000117476 ENSMUST00000234959 Gm9416 processed_pseudogene Interval_1262 chr1 18536756 18538080 + 0 NA Intergenic Intergenic -171010 ENSMUSG00000101306.1 ENSMUSG00000101306 ENSMUST00000189030 Gm5252 processed_pseudogene Interval_125460 chr5 67306586 67307644 + 0 NA promoter-TSS (ENSMUSG00000029221.15) protein_coding-promoter-TSS (ENSMUSG00000029221.15) -8611 ENSMUSG00000029221.15 ENSMUSG00000029221 ENSMUST00000161169 Slc30a9 protein_coding Interval_10262 chr1 167652282 167653051 + 0 NA Intergenic Intergenic -36571 ENSMUSG00000026686.14 ENSMUSG00000026686 ENSMUST00000028003 Lmx1a protein_coding Interval_114548 chr4 82430437 82431143 + 0 NA intron (ENSMUSG00000008575.17, intron 2 of 4) protein_coding-intron (ENSMUSG00000008575.17, intron 2 of 11) -8620 ENSMUSG00000084595.1 ENSMUSG00000084595 ENSMUST00000122646 n-R5s188 rRNA Interval_153245 chr7 142850783 142851348 + 0 NA exon (ENSMUSG00000073781.4, exon 3 of 4) lincRNA-exon (ENSMUSG00000073781.4, exon 3 of 4) 6517 ENSMUSG00000108952.1 ENSMUSG00000108952 ENSMUST00000207692 Gm39117 lincRNA Interval_136538 chr6 55336004 55336846 + 0 NA promoter-TSS (ENSMUSG00000004655.5) protein_coding-promoter-TSS (ENSMUSG00000004655.5) -7 ENSMUSG00000004655.5 ENSMUSG00000004655 ENSMUST00000004774 Aqp1 protein_coding Interval_92820 chr2 65909624 65911772 + 0 NA intron (ENSMUSG00000044647.16, intron 2 of 2) protein_coding-intron (ENSMUSG00000044647.16, intron 2 of 5) -19439 ENSMUSG00000044647.16 ENSMUSG00000044647 ENSMUST00000112394 Csrnp3 protein_coding Interval_22426 chr11 9979336 9980327 + 0 NA Intergenic Intergenic -242210 ENSMUSG00000081629.1 ENSMUSG00000081629 ENSMUST00000117907 Eif3s6-ps1 processed_pseudogene Interval_132900 chr5 148634937 148635413 + 0 NA Intergenic Intergenic -21531 ENSMUSG00000107098.1 ENSMUSG00000107098 ENSMUST00000202418 Gm29815 processed_pseudogene Interval_99017 chr2 156696558 156697145 + 0 NA intron (ENSMUSG00000061689.15, intron 2 of 12) protein_coding-intron (ENSMUSG00000061689.15, intron 2 of 12) 24058 ENSMUSG00000086638.7 ENSMUSG00000086638 ENSMUST00000130089 4930405A21Rik processed_transcript Interval_135754 chr6 46963397 46963922 + 0 NA intron (ENSMUSG00000039419.17, intron 15 of 23) protein_coding-intron (ENSMUSG00000039419.17, intron 15 of 23) -81497 ENSMUSG00000107952.1 ENSMUSG00000107952 ENSMUST00000203583 Gm6352 processed_pseudogene Interval_115309 chr4 95765575 95766205 + 0 NA intron (ENSMUSG00000028573.18, intron 5 of 12) protein_coding-intron (ENSMUSG00000028573.18, intron 7 of 10) 201145 ENSMUSG00000044125.6 ENSMUSG00000044125 ENSMUST00000143332 9530080O11Rik processed_transcript Interval_103418 chr3 41451659 41452624 + 0 NA Intergenic Intergenic -10674 ENSMUSG00000089350.1 ENSMUSG00000089350 ENSMUST00000158725 Gm25487 snoRNA Interval_173896 chrX 107815752 107816690 + 0 NA promoter-TSS (ENSMUSG00000073007.10) protein_coding-promoter-TSS (ENSMUSG00000073007.10) -351 ENSMUSG00000073007.10 ENSMUSG00000073007 ENSMUST00000167154 Tent5d protein_coding Interval_66374 chr16 33456306 33456547 + 0 NA intron (ENSMUSG00000022811.17, intron 4 of 7) protein_coding-intron (ENSMUSG00000022811.17, intron 4 of 8) 75563 ENSMUSG00000022811.17 ENSMUSG00000022811 ENSMUST00000089677 Zfp148 protein_coding Interval_31675 chr11 102195605 102196984 + 0 NA TTS (ENSMUSG00000008855.17) protein_coding-TTS (ENSMUSG00000008855.17) 4269 ENSMUSG00000034793.15 ENSMUSG00000034793 ENSMUST00000153178 G6pc3 protein_coding Interval_160521 chr8 110250019 110250381 + 0 NA Intergenic Intergenic -16791 ENSMUSG00000059854.8 ENSMUSG00000059854 ENSMUST00000212034 Hydin protein_coding Interval_92562 chr2 60711308 60711732 + 0 NA intron (ENSMUSG00000026971.15, intron 1 of 16) protein_coding-intron (ENSMUSG00000026971.15, intron 1 of 17) -37794 ENSMUSG00000026971.15 ENSMUSG00000026971 ENSMUST00000142696 Itgb6 protein_coding Interval_137403 chr6 71945945 71946462 + 0 NA intron (ENSMUSG00000049553.11, intron 14 of 19) protein_coding-intron (ENSMUSG00000049553.11, intron 14 of 33) -2158 ENSMUSG00000049553.11 ENSMUSG00000049553 ENSMUST00000205517 Polr1a protein_coding Interval_85901 chr19 32852366 32853296 + 0 NA Intergenic Intergenic 41606 ENSMUSG00000013663.7 ENSMUSG00000013663 ENSMUST00000154806 Pten protein_coding Interval_96562 chr2 125731422 125732436 + 0 NA Intergenic Intergenic -7781 ENSMUSG00000035109.14 ENSMUSG00000035109 ENSMUST00000157002 Shc4 protein_coding Interval_25219 chr11 45527676 45527871 + 0 NA Intergenic Intergenic -106989 ENSMUSG00000085476.1 ENSMUSG00000085476 ENSMUST00000123422 Gm12162 lincRNA Interval_26778 chr11 60439554 60440911 + 0 NA intron (ENSMUSG00000018415.14, intron 5 of 7) protein_coding-intron (ENSMUSG00000018415.14, intron 5 of 5) -6511 ENSMUSG00000083412.1 ENSMUSG00000083412 ENSMUST00000118398 Gm12268 processed_pseudogene Interval_167596 chr9 70916677 70916877 + 0 NA intron (ENSMUSG00000032207.10, intron 1 of 8) protein_coding-intron (ENSMUSG00000032207.10, intron 1 of 8) -13711 ENSMUSG00000111631.1 ENSMUSG00000111631 ENSMUST00000215190 Gm32017 processed_transcript Interval_82558 chr18 75148995 75149229 + 0 NA intron (ENSMUSG00000035765.10, intron 13 of 16) protein_coding-intron (ENSMUSG00000035765.10, intron 13 of 16) 23687 ENSMUSG00000035765.10 ENSMUSG00000035765 ENSMUST00000236840 Dym protein_coding Interval_117188 chr4 120368463 120369243 + 0 NA Intergenic Intergenic -36528 ENSMUSG00000000085.16 ENSMUSG00000000085 ENSMUST00000133169 Scmh1 protein_coding Interval_160269 chr8 107574545 107575402 + 0 NA Intergenic Intergenic 13485 ENSMUSG00000039067.5 ENSMUSG00000039067 ENSMUST00000213080 Psmd7 protein_coding Interval_91580 chr2 43883534 43883805 + 0 NA intron (ENSMUSG00000049744.15, intron 5 of 5) protein_coding-intron (ENSMUSG00000049744.15, intron 5 of 13) 134800 ENSMUSG00000049744.15 ENSMUSG00000049744 ENSMUST00000128630 Arhgap15 protein_coding Interval_102147 chr3 18620465 18621137 + 0 NA Intergenic Intergenic -1361 ENSMUSG00000104918.1 ENSMUSG00000104918 ENSMUST00000198383 Gm42944 TEC Interval_64662 chr16 13981749 13982191 + 0 NA TTS (ENSMUSG00000065968.8) protein_coding-TTS (ENSMUSG00000065968.8) -4704 ENSMUSG00000044117.12 ENSMUSG00000044117 ENSMUST00000131608 Bmerb1 protein_coding Interval_16417 chr10 62802434 62802631 + 0 NA Intergenic Intergenic -19345 ENSMUSG00000112806.1 ENSMUSG00000112806 ENSMUST00000218355 Gm48146 TEC Interval_109530 chr3 144150870 144151056 + 0 NA Intergenic Intergenic -15209 ENSMUSG00000106367.1 ENSMUSG00000106367 ENSMUST00000198202 Gm34078 lincRNA Interval_137012 chr6 66374365 66375548 + 0 NA Intergenic Intergenic 23760 ENSMUSG00000107837.1 ENSMUSG00000107837 ENSMUST00000203090 Gm44281 processed_pseudogene Interval_67516 chr16 50162984 50164084 + 0 NA Intergenic Intergenic 52461 ENSMUSG00000098028.1 ENSMUSG00000098028 ENSMUST00000182962 Gm8824 processed_pseudogene Interval_40581 chr12 105835732 105836407 + 0 NA TTS (ENSMUSG00000021111.15) protein_coding-TTS (ENSMUSG00000021111.15) 7002 ENSMUSG00000021111.15 ENSMUSG00000021111 ENSMUST00000172089 Papola protein_coding Interval_24834 chr11 40075512 40075725 + 0 NA intron (ENSMUSG00000085301.1, intron 2 of 7) lincRNA-intron (ENSMUSG00000085301.1, intron 2 of 7) 67424 ENSMUSG00000085301.1 ENSMUSG00000085301 ENSMUST00000130945 Gm12132 lincRNA Interval_166067 chr9 56200377 56201280 + 0 NA TTS (ENSMUSG00000074305.9) protein_coding-TTS (ENSMUSG00000074305.9) 22943 ENSMUSG00000076281.1 ENSMUSG00000076281 ENSMUST00000102326 Gm24270 miRNA Interval_33468 chr11 116701388 116701755 + 0 NA Intergenic Intergenic -6962 ENSMUSG00000057286.6 ENSMUSG00000057286 ENSMUST00000145441 St6galnac2 protein_coding Interval_69404 chr16 92864992 92865218 + 0 NA intron (ENSMUSG00000116805.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000116805.1, intron 1 of 2) 3228 ENSMUSG00000116805.1 ENSMUSG00000116805 ENSMUST00000231501 Gm49723 lincRNA Interval_135191 chr6 37404133 37404675 + 0 NA intron (ENSMUSG00000038648.5, intron 1 of 11) protein_coding-intron (ENSMUSG00000038648.5, intron 1 of 11) -67869 ENSMUSG00000038648.5 ENSMUSG00000038648 ENSMUST00000128534 Creb3l2 protein_coding Interval_20165 chr10 115355822 115356316 + 0 NA intron (ENSMUSG00000069520.6, intron 3 of 6) protein_coding-intron (ENSMUSG00000069520.6, intron 3 of 6) 6424 ENSMUSG00000069520.6 ENSMUSG00000069520 ENSMUST00000219597 Tmem19 protein_coding Interval_163410 chr9 21313220 21316064 + 0 NA Intergenic Intergenic -2326 ENSMUSG00000003309.14 ENSMUSG00000003309 ENSMUST00000213250 Ap1m2 protein_coding Interval_129761 chr5 122170280 122171947 + 0 NA promoter-TSS (ENSMUSG00000004455.16) protein_coding-promoter-TSS (ENSMUSG00000004455.16) 5516 ENSMUSG00000105742.1 ENSMUSG00000105742 ENSMUST00000199354 Gm42748 TEC Interval_38428 chr12 78987488 78988270 + 0 NA intron (ENSMUSG00000046157.13, intron 1 of 2) protein_coding-intron (ENSMUSG00000046157.13, intron 1 of 2) 19461 ENSMUSG00000046157.13 ENSMUSG00000046157 ENSMUST00000173095 Tmem229b protein_coding Interval_82838 chr18 77316175 77317898 + 0 NA intron (ENSMUSG00000032818.16, intron 1 of 20) protein_coding-intron (ENSMUSG00000032818.16, intron 1 of 20) -18358 ENSMUSG00000118108.1 ENSMUSG00000118108 ENSMUST00000238018 Gm50284 antisense Interval_148220 chr7 79952990 79953284 + 0 NA Intergenic Intergenic 3950 ENSMUSG00000077059.1 ENSMUSG00000077059 ENSMUST00000103871 Gm24541 miRNA Interval_79992 chr18 36521800 36522427 + 0 NA intron (ENSMUSG00000118214.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000118214.1, intron 1 of 1) 230 ENSMUSG00000118214.1 ENSMUSG00000118214 ENSMUST00000235275 Gm50199 lincRNA Interval_71643 chr17 25088475 25088983 + 0 NA TTS (ENSMUSG00000024169.16) protein_coding-TTS (ENSMUSG00000024169.16) -5138 ENSMUSG00000024168.8 ENSMUSG00000024168 ENSMUST00000153745 Tmem204 protein_coding Interval_63643 chr15 102500937 102502494 + 0 NA exon (ENSMUSG00000023050.9, exon 11 of 14) protein_coding-exon (ENSMUSG00000023050.9, exon 11 of 14) -2007 ENSMUSG00000071586.4 ENSMUSG00000071586 ENSMUST00000096145 Gm10337 protein_coding Interval_161577 chr8 121313541 121314266 + 0 NA intron (ENSMUSG00000097384.1, intron 1 of 1) protein_coding-intron (ENSMUSG00000092329.1, intron 1 of 15) 42933 ENSMUSG00000097384.1 ENSMUSG00000097384 ENSMUST00000181200 Gm26815 lincRNA Interval_22423 chr11 9942439 9942777 + 0 NA Intergenic Intergenic -204987 ENSMUSG00000081629.1 ENSMUSG00000081629 ENSMUST00000117907 Eif3s6-ps1 processed_pseudogene Interval_154673 chr8 22496336 22497659 + 0 NA intron (ENSMUSG00000037656.9, intron 1 of 1) protein_coding-intron (ENSMUSG00000037656.9, intron 1 of 10) -9229 ENSMUSG00000037656.9 ENSMUSG00000037656 ENSMUST00000210388 Slc20a2 protein_coding Interval_95807 chr2 116771961 116772388 + 0 NA Intergenic Intergenic 104994 ENSMUSG00000086462.1 ENSMUSG00000086462 ENSMUST00000151391 Gm13990 antisense Interval_153379 chr7 144207880 144208862 + 0 NA intron (ENSMUSG00000037541.22, intron 13 of 17) protein_coding-intron (ENSMUSG00000037541.22, intron 4 of 15) -30354 ENSMUSG00000037541.22 ENSMUSG00000037541 ENSMUST00000136979 Shank2 protein_coding Interval_13499 chr10 18760110 18760691 + 0 NA intron (ENSMUSG00000111474.1, intron 1 of 4) antisense-intron (ENSMUSG00000111474.1, intron 1 of 4) -16451 ENSMUSG00000019852.7 ENSMUSG00000019852 ENSMUST00000019999 Arfgef3 protein_coding Interval_111873 chr4 32166081 32167093 + 0 NA Intergenic Intergenic 16801 ENSMUSG00000083872.1 ENSMUSG00000083872 ENSMUST00000119323 Gm11928 processed_pseudogene Interval_141310 chr6 127104959 127105350 + 0 NA intron (ENSMUSG00000038028.9, intron 1 of 5) protein_coding-intron (ENSMUSG00000038028.9, intron 1 of 5) 4403 ENSMUSG00000038028.9 ENSMUSG00000038028 ENSMUST00000200988 Tigar protein_coding Interval_172220 chrX 10216025 10216986 + 0 NA promoter-TSS (ENSMUSG00000031174.17) protein_coding-promoter-TSS (ENSMUSG00000031174.17) 253 ENSMUSG00000031174.17 ENSMUSG00000031174 ENSMUST00000143532 Rpgr protein_coding Interval_169048 chr9 91151857 91152237 + 0 NA Intergenic Intergenic -21529 ENSMUSG00000103938.1 ENSMUSG00000103938 ENSMUST00000195491 Gm36960 TEC Interval_5004 chr1 84128448 84130770 + 0 NA intron (ENSMUSG00000045658.16, intron 4 of 4) protein_coding-intron (ENSMUSG00000045658.16, intron 2 of 2) 4901 ENSMUSG00000102750.1 ENSMUSG00000102750 ENSMUST00000193393 Gm37058 TEC Interval_66836 chr16 37982491 37982666 + 0 NA intron (ENSMUSG00000046961.8, intron 5 of 9) protein_coding-intron (ENSMUSG00000046961.8, intron 5 of 9) 2491 ENSMUSG00000065188.1 ENSMUSG00000065188 ENSMUST00000083254 Gm25140 snRNA Interval_7376 chr1 130710373 130710771 + 0 NA intron (ENSMUSG00000026409.14, intron 1 of 15) protein_coding-intron (ENSMUSG00000026409.14, intron 1 of 12) 4004 ENSMUSG00000026409.14 ENSMUSG00000026409 ENSMUST00000186777 Pfkfb2 protein_coding Interval_109862 chr3 149106216 149106479 + 0 NA Intergenic Intergenic 77415 ENSMUSG00000065270.1 ENSMUSG00000065270 ENSMUST00000083336 Gm25127 snRNA Interval_164020 chr9 30969593 30970447 + 0 NA intron (ENSMUSG00000111673.1, intron 2 of 2) antisense-intron (ENSMUSG00000111673.1, intron 2 of 2) 26562 ENSMUSG00000031994.13 ENSMUSG00000031994 ENSMUST00000163037 Adamts8 protein_coding Interval_82139 chr18 67972974 67973204 + 0 NA intron (ENSMUSG00000024544.9, intron 1 of 5) protein_coding-intron (ENSMUSG00000024544.9, intron 1 of 5) 65461 ENSMUSG00000118326.1 ENSMUSG00000118326 ENSMUST00000235570 Gm8887 processed_pseudogene Interval_116525 chr4 115034674 115035276 + 0 NA intron (ENSMUSG00000028718.16, intron 15 of 17) protein_coding-intron (ENSMUSG00000028718.16, intron 14 of 16) -24533 ENSMUSG00000028717.12 ENSMUSG00000028717 ENSMUST00000162489 Tal1 protein_coding Interval_155348 chr8 32055079 32055453 + 0 NA intron (ENSMUSG00000062991.9, intron 1 of 12) protein_coding-intron (ENSMUSG00000062991.9, intron 1 of 8) -46157 ENSMUSG00000062991.9 ENSMUSG00000062991 ENSMUST00000208206 Nrg1 protein_coding Interval_166177 chr9 57273118 57274167 + 0 NA Intergenic Intergenic -12133 ENSMUSG00000032300.7 ENSMUSG00000032300 ENSMUST00000217657 1700017B05Rik protein_coding Interval_22667 chr11 12692167 12693034 + 0 NA promoter-TSS (ENSMUSG00000088509.1) snoRNA-promoter-TSS (ENSMUSG00000088509.1) -213 ENSMUSG00000088509.1 ENSMUSG00000088509 ENSMUST00000157884 Gm22789 snoRNA Interval_61567 chr15 82438041 82438289 + 0 NA intron (ENSMUSG00000068086.6, intron 1 of 2) protein_coding-intron (ENSMUSG00000068086.6, intron 1 of 2) 4638 ENSMUSG00000116325.1 ENSMUSG00000116325 ENSMUST00000230551 Gm46501 transcribed_unprocessed_pseudogene Interval_55495 chr14 89061129 89061627 + 0 NA Intergenic Intergenic -289647 ENSMUSG00000102164.1 ENSMUSG00000102164 ENSMUST00000192706 Gm36946 TEC Interval_90137 chr2 28465986 28466696 + 0 NA promoter-TSS (ENSMUSG00000026831.16) protein_coding-promoter-TSS (ENSMUSG00000026831.16) -25 ENSMUSG00000026831.16 ENSMUSG00000026831 ENSMUST00000127683 1700007K13Rik protein_coding Interval_15569 chr10 51612141 51612628 + 0 NA Intergenic Intergenic 19047 ENSMUSG00000019905.8 ENSMUSG00000019905 ENSMUST00000218684 Gprc6a protein_coding Interval_68814 chr16 87254709 87255183 + 0 NA Intergenic Intergenic -99297 ENSMUSG00000044442.11 ENSMUSG00000044442 ENSMUST00000118115 N6amt1 protein_coding Interval_87240 chr19 47137090 47140203 + 0 NA promoter-TSS (ENSMUSG00000033033.10) protein_coding-promoter-TSS (ENSMUSG00000033033.10) -352 ENSMUSG00000033033.10 ENSMUSG00000033033 ENSMUST00000035822 Calhm2 protein_coding Interval_59728 chr15 58931647 58932044 + 0 NA TTS (ENSMUSG00000050891.10) protein_coding-TTS (ENSMUSG00000050891.10) -1963 ENSMUSG00000022354.4 ENSMUSG00000022354 ENSMUST00000228595 Ndufb9 protein_coding Interval_135624 chr6 41731877 41732081 + 0 NA Intergenic Intergenic -35793 ENSMUSG00000103788.1 ENSMUSG00000103788 ENSMUST00000192406 Gm37527 TEC Interval_41370 chr12 113124747 113125022 + 0 NA intron (ENSMUSG00000021144.14, intron 7 of 20) protein_coding-intron (ENSMUSG00000021144.14, intron 7 of 20) -6664 ENSMUSG00000021144.14 ENSMUSG00000021144 ENSMUST00000156030 Mta1 protein_coding Interval_160204 chr8 107114698 107115130 + 0 NA Intergenic Intergenic -4196 ENSMUSG00000102271.1 ENSMUSG00000102271 ENSMUST00000193420 C630050I24Rik TEC Interval_87968 chr19 57438875 57439751 + 0 NA Intergenic Intergenic -13644 ENSMUSG00000025086.13 ENSMUSG00000025086 ENSMUST00000238107 Trub1 protein_coding Interval_76851 chr17 84519644 84519898 + 0 NA intron (ENSMUSG00000040852.6, intron 1 of 9) protein_coding-intron (ENSMUSG00000040852.6, intron 1 of 29) 31472 ENSMUSG00000117391.1 ENSMUSG00000117391 ENSMUST00000234072 4930500A05Rik antisense Interval_72237 chr17 28736193 28736665 + 0 NA intron (ENSMUSG00000053436.15, intron 8 of 11) protein_coding-intron (ENSMUSG00000053436.15, intron 8 of 11) 10346 ENSMUSG00000117145.1 ENSMUSG00000117145 ENSMUST00000233003 Gm4356 protein_coding Interval_55649 chr14 98072739 98073948 + 0 NA intron (ENSMUSG00000055639.16, intron 1 of 9) protein_coding-intron (ENSMUSG00000055639.16, intron 1 of 10) -45166 ENSMUSG00000086133.1 ENSMUSG00000086133 ENSMUST00000144274 Gm16331 processed_pseudogene Interval_133432 chr6 4992470 4992896 + 0 NA intron (ENSMUSG00000032827.15, intron 1 of 17) protein_coding-intron (ENSMUSG00000032827.15, intron 2 of 15) 33700 ENSMUSG00000097396.1 ENSMUSG00000097396 ENSMUST00000180645 Gm26556 TEC Interval_82454 chr18 74181722 74183379 + 0 NA Intergenic Intergenic 25197 ENSMUSG00000036223.16 ENSMUSG00000036223 ENSMUST00000237276 Ska1 protein_coding Interval_109289 chr3 138675693 138676766 + 0 NA Intergenic Intergenic -32285 ENSMUSG00000105126.1 ENSMUSG00000105126 ENSMUST00000196886 Gm43723 processed_pseudogene Interval_33297 chr11 115769273 115770189 + 0 NA intron (ENSMUSG00000020747.18, intron 1 of 1) protein_coding-intron (ENSMUSG00000020747.18, intron 1 of 31) -10968 ENSMUSG00000020747.18 ENSMUSG00000020747 ENSMUST00000125918 Tmem94 protein_coding Interval_55039 chr14 77392897 77393185 + 0 NA intron (ENSMUSG00000022012.9, intron 3 of 6) protein_coding-intron (ENSMUSG00000022012.9, intron 4 of 18) 47935 ENSMUSG00000115244.1 ENSMUSG00000115244 ENSMUST00000226498 Gm49002 antisense Interval_167686 chr9 71923797 71924218 + 0 NA intron (ENSMUSG00000032228.16, intron 1 of 6) protein_coding-intron (ENSMUSG00000032228.16, intron 6 of 19) 15164 ENSMUSG00000098761.1 ENSMUSG00000098761 ENSMUST00000184135 Gm18821 processed_pseudogene Interval_29741 chr11 86507052 86508386 + 0 NA intron (ENSMUSG00000020516.15, intron 12 of 14) protein_coding-intron (ENSMUSG00000020516.15, intron 12 of 14) 22989 ENSMUSG00000020521.7 ENSMUSG00000020521 ENSMUST00000131246 Rnft1 protein_coding Interval_123516 chr5 33115706 33116398 + 0 NA intron (ENSMUSG00000011034.6, intron 1 of 14) protein_coding-intron (ENSMUSG00000011034.6, intron 1 of 14) -10750 ENSMUSG00000081022.1 ENSMUSG00000081022 ENSMUST00000118706 Gm15936 processed_pseudogene Interval_103585 chr3 50442815 50444296 + 0 NA promoter-TSS (ENSMUSG00000027737.10) protein_coding-promoter-TSS (ENSMUSG00000027737.10) 59 ENSMUSG00000027737.10 ENSMUSG00000027737 ENSMUST00000193838 Slc7a11 protein_coding Interval_49533 chr13 112775699 112776541 + 0 NA Intergenic Intergenic 11272 ENSMUSG00000114286.1 ENSMUSG00000114286 ENSMUST00000225832 Gm47850 lincRNA Interval_42615 chr13 16817372 16817566 + 0 NA Intergenic Intergenic 42003 ENSMUSG00000087872.1 ENSMUSG00000087872 ENSMUST00000157247 Gm26098 misc_RNA Interval_133755 chr6 11616185 11616607 + 0 NA Intergenic Intergenic 291087 ENSMUSG00000029632.7 ENSMUSG00000029632 ENSMUST00000204714 Ndufa4 protein_coding Interval_163235 chr9 18927724 18928673 + 0 NA Intergenic Intergenic 4783 ENSMUSG00000066914.4 ENSMUSG00000066914 ENSMUST00000086496 Olfr831-ps1 unprocessed_pseudogene Interval_13981 chr10 25251484 25252031 + 0 NA exon (ENSMUSG00000112371.1, exon 1 of 1) processed_pseudogene-exon (ENSMUSG00000112371.1, exon 1 of 1) 257 ENSMUSG00000112371.1 ENSMUSG00000112371 ENSMUST00000219066 Gm7791 processed_pseudogene Interval_40771 chr12 108265637 108266415 + 0 NA intron (ENSMUSG00000084883.2, intron 1 of 5) protein_coding-intron (ENSMUSG00000084883.2, intron 1 of 6) 9399 ENSMUSG00000084883.2 ENSMUSG00000084883 ENSMUST00000136175 Ccdc85c protein_coding Interval_163994 chr9 30571013 30571276 + 0 NA Intergenic Intergenic 58204 ENSMUSG00000111438.1 ENSMUSG00000111438 ENSMUST00000214262 Rps2-ps12 processed_pseudogene Interval_147989 chr7 76408595 76409055 + 0 NA intron (ENSMUSG00000025754.11, intron 6 of 22) protein_coding-intron (ENSMUSG00000025754.11, intron 6 of 22) -162887 ENSMUSG00000098009.1 ENSMUSG00000098009 ENSMUST00000182353 Gm5597 processed_pseudogene Interval_94596 chr2 92503299 92503571 + 0 NA intron (ENSMUSG00000085261.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000085261.1, intron 1 of 1) 19509 ENSMUSG00000085261.1 ENSMUSG00000085261 ENSMUST00000141341 Gm13814 lincRNA Interval_2420 chr1 39186464 39187273 + 0 NA TTS (ENSMUSG00000098833.1) miRNA-TTS (ENSMUSG00000098833.1) 124 ENSMUSG00000098833.1 ENSMUSG00000098833 ENSMUST00000184059 Mir6349 miRNA Interval_162508 chr9 3430573 3430886 + 0 NA exon (ENSMUSG00000025898.6, exon 8 of 18) protein_coding-exon (ENSMUSG00000025898.6, exon 8 of 18) 26641 ENSMUSG00000025898.6 ENSMUSG00000025898 ENSMUST00000212101 Cwf19l2 protein_coding Interval_34431 chr12 4117942 4118928 + 0 NA Intergenic Intergenic -14668 ENSMUSG00000020654.15 ENSMUSG00000020654 ENSMUST00000127110 Adcy3 protein_coding Interval_99651 chr2 163951533 163952243 + 0 NA Intergenic Intergenic -33205 ENSMUSG00000035226.5 ENSMUSG00000035226 ENSMUST00000044734 Rims4 protein_coding Interval_147700 chr7 72229832 72230364 + 0 NA promoter-TSS (ENSMUSG00000032776.9) protein_coding-promoter-TSS (ENSMUSG00000032776.9) -738 ENSMUSG00000032776.9 ENSMUSG00000032776 ENSMUST00000206755 Mctp2 protein_coding Interval_145914 chr7 41648985 41649544 + 0 NA TTS (ENSMUSG00000074165.10) protein_coding-TTS (ENSMUSG00000074165.10) 1680 ENSMUSG00000074165.10 ENSMUSG00000074165 ENSMUST00000170770 Zfp788 protein_coding Interval_47815 chr13 93423156 93423616 + 0 NA Intergenic Intergenic -2070 ENSMUSG00000113514.1 ENSMUSG00000113514 ENSMUST00000222962 Gm18960 processed_pseudogene Interval_86557 chr19 41679957 41680600 + 0 NA intron (ENSMUSG00000025020.11, intron 3 of 11) protein_coding-intron (ENSMUSG00000025020.11, intron 4 of 36) 63208 ENSMUSG00000025020.11 ENSMUSG00000025020 ENSMUST00000171586 Slit1 protein_coding Interval_87368 chr19 47975690 47976085 + 0 NA intron (ENSMUSG00000046585.9, intron 11 of 17) protein_coding-intron (ENSMUSG00000046585.9, intron 11 of 17) 38212 ENSMUSG00000046585.9 ENSMUSG00000046585 ENSMUST00000066308 Cfap58 protein_coding Interval_94904 chr2 101534465 101534725 + 0 NA Intergenic Intergenic -36029 ENSMUSG00000093614.1 ENSMUSG00000093614 ENSMUST00000177431 Gm20693 processed_pseudogene Interval_158040 chr8 78227020 78227383 + 0 NA intron (ENSMUSG00000037101.16, intron 2 of 10) protein_coding-intron (ENSMUSG00000037101.16, intron 5 of 13) 13851 ENSMUSG00000037101.16 ENSMUSG00000037101 ENSMUST00000124713 Ttc29 protein_coding Interval_36052 chr12 34051082 34051534 + 0 NA TTS (ENSMUSG00000004698.11) protein_coding-TTS (ENSMUSG00000004698.11) 93637 ENSMUSG00000035799.6 ENSMUSG00000035799 ENSMUST00000049089 Twist1 protein_coding Interval_8436 chr1 139324577 139325808 + 0 NA intron (ENSMUSG00000063681.14, intron 1 of 3) protein_coding-intron (ENSMUSG00000063681.14, intron 3 of 11) 3056 ENSMUSG00000063681.14 ENSMUSG00000063681 ENSMUST00000197035 Crb1 protein_coding Interval_70446 chr17 10280108 10280319 + 0 NA intron (ENSMUSG00000062078.15, intron 2 of 6) protein_coding-intron (ENSMUSG00000062078.15, intron 2 of 6) 39148 ENSMUSG00000062078.15 ENSMUSG00000062078 ENSMUST00000233684 Qk protein_coding Interval_144548 chr7 25825026 25825236 + 0 NA Intergenic Intergenic 3596 ENSMUSG00000076445.1 ENSMUSG00000076445 ENSMUST00000103246 Gm24865 miRNA Interval_173550 chrX 99198790 99199697 + 0 NA Intergenic Intergenic 61112 ENSMUSG00000031217.8 ENSMUSG00000031217 ENSMUST00000151750 Efnb1 protein_coding Interval_88407 chr2 4870783 4871113 + 0 NA Intergenic Intergenic -13109 ENSMUSG00000026662.13 ENSMUSG00000026662 ENSMUST00000140045 Sephs1 protein_coding Interval_162420 chr8 128517643 128517885 + 0 NA Intergenic Intergenic -116172 ENSMUSG00000110562.1 ENSMUSG00000110562 ENSMUST00000212641 Gm9204 processed_pseudogene Interval_52378 chr14 45477389 45477593 + 0 NA intron (ENSMUSG00000037712.16, intron 4 of 5) protein_coding-intron (ENSMUSG00000037712.16, intron 4 of 14) 6478 ENSMUSG00000037712.16 ENSMUSG00000037712 ENSMUST00000149723 Fermt2 protein_coding Interval_143239 chr7 4690328 4691605 + 0 NA promoter-TSS (ENSMUSG00000035390.16) protein_coding-promoter-TSS (ENSMUSG00000035390.16) -114 ENSMUSG00000035390.16 ENSMUSG00000035390 ENSMUST00000123637 Brsk1 protein_coding Interval_145608 chr7 35948390 35948984 + 0 NA Intergenic Intergenic 110427 ENSMUSG00000100387.1 ENSMUSG00000100387 ENSMUST00000187488 Gm28514 lincRNA Interval_141958 chr6 135984960 135985346 + 0 NA intron (ENSMUSG00000030209.14, intron 4 of 5) protein_coding-intron (ENSMUSG00000030209.14, intron 3 of 13) 109648 ENSMUSG00000086614.2 ENSMUSG00000086614 ENSMUST00000155455 Gm14330 antisense Interval_77168 chr17 87041901 87042111 + 0 NA Intergenic Intergenic 11819 ENSMUSG00000087736.1 ENSMUSG00000087736 ENSMUST00000157111 Gm24648 snoRNA Interval_163754 chr9 25272077 25272362 + 0 NA intron (ENSMUSG00000001833.17, intron 3 of 12) protein_coding-intron (ENSMUSG00000001833.17, intron 3 of 13) 3256 ENSMUSG00000111004.1 ENSMUSG00000111004 ENSMUST00000214972 Gm48272 processed_pseudogene Interval_142053 chr6 136803421 136804541 + 0 NA promoter-TSS (ENSMUSG00000107542.1) TEC-promoter-TSS (ENSMUSG00000107542.1) 434 ENSMUSG00000096010.2 ENSMUSG00000096010 ENSMUST00000179285 H4f16 protein_coding Interval_86057 chr19 36090403 36091175 + 0 NA intron (ENSMUSG00000024800.8, intron 5 of 5) protein_coding-intron (ENSMUSG00000024800.8, intron 5 of 10) 6999 ENSMUSG00000024800.8 ENSMUSG00000024800 ENSMUST00000235223 Rpp30 protein_coding Interval_142162 chr6 137721970 137724804 + 0 NA Intergenic Intergenic -21653 ENSMUSG00000030224.10 ENSMUSG00000030224 ENSMUST00000137235 Strap protein_coding Interval_36713 chr12 52381158 52383810 + 0 NA Intergenic Intergenic 65641 ENSMUSG00000112139.1 ENSMUSG00000112139 ENSMUST00000218097 Gm47431 lincRNA Interval_138355 chr6 87552182 87552618 + 0 NA Intergenic Intergenic 18993 ENSMUSG00000108184.1 ENSMUSG00000108184 ENSMUST00000203063 Gm44198 TEC Interval_100304 chr2 168287021 168287403 + 0 NA Intergenic Intergenic -5476 ENSMUSG00000074575.4 ENSMUSG00000074575 ENSMUST00000131749 Kcng1 protein_coding Interval_88133 chr19 59467659 59468091 + 0 NA Intergenic Intergenic 5073 ENSMUSG00000043969.4 ENSMUSG00000043969 ENSMUST00000174573 Emx2 protein_coding Interval_35096 chr12 17288807 17289086 + 0 NA intron (ENSMUSG00000020566.19, intron 10 of 12) protein_coding-intron (ENSMUSG00000020566.19, intron 12 of 14) 22351 ENSMUSG00000020571.13 ENSMUSG00000020571 ENSMUST00000163000 Pdia6 protein_coding Interval_1679 chr1 30977271 30977993 + 0 NA exon (ENSMUSG00000117091.1, exon 1 of 1) protein_coding-exon (ENSMUSG00000117091.1, exon 1 of 1) 336 ENSMUSG00000117091.1 ENSMUSG00000117091 ENSMUST00000178317 Gm5698 protein_coding Interval_18399 chr10 85538240 85540216 + 0 NA intron (ENSMUSG00000020042.15, intron 1 of 16) protein_coding-intron (ENSMUSG00000020042.15, intron 1 of 9) -105975 ENSMUSG00000020042.15 ENSMUSG00000020042 ENSMUST00000145433 Btbd11 protein_coding Interval_172440 chrX 20355984 20356651 + 0 NA Intergenic Intergenic -8258 ENSMUSG00000060090.16 ENSMUSG00000060090 ENSMUST00000133619 Rp2 protein_coding Interval_92366 chr2 59289818 59290562 + 0 NA intron (ENSMUSG00000026991.20, intron 3 of 4) protein_coding-intron (ENSMUSG00000026991.20, intron 4 of 21) 97281 ENSMUSG00000087455.7 ENSMUSG00000087455 ENSMUST00000155111 5330411J11Rik processed_transcript Interval_122108 chr5 17120740 17121289 + 0 NA Intergenic Intergenic 106920 ENSMUSG00000091273.1 ENSMUSG00000091273 ENSMUST00000166114 Gm6673 unprocessed_pseudogene Interval_39701 chr12 93645856 93646553 + 0 NA Intergenic Intergenic -70216 ENSMUSG00000112982.1 ENSMUSG00000112982 ENSMUST00000221024 Gm21007 processed_pseudogene Interval_90220 chr2 29096524 29099097 + 0 NA Intergenic Intergenic -3705 ENSMUSG00000082788.1 ENSMUSG00000082788 ENSMUST00000120617 Gm13396 processed_pseudogene Interval_134885 chr6 33137772 33137998 + 0 NA Intergenic Intergenic -49136 ENSMUSG00000087777.1 ENSMUSG00000087777 ENSMUST00000157152 Gm22321 snRNA Interval_116873 chr4 117882775 117883859 + 0 NA promoter-TSS (ENSMUSG00000028541.14) protein_coding-promoter-TSS (ENSMUSG00000028541.14) -304 ENSMUSG00000085278.1 ENSMUSG00000085278 ENSMUST00000128263 Gm12841 antisense Interval_163471 chr9 21592365 21593737 + 0 NA promoter-TSS (ENSMUSG00000032182.15) protein_coding-promoter-TSS (ENSMUSG00000032182.15) -235 ENSMUSG00000032182.15 ENSMUSG00000032182 ENSMUST00000213809 Yipf2 protein_coding Interval_114648 chr4 83441730 83442131 + 0 NA exon (ENSMUSG00000028483.13, exon 6 of 9) protein_coding-exon (ENSMUSG00000028483.13, exon 6 of 9) -12024 ENSMUSG00000028483.13 ENSMUSG00000028483 ENSMUST00000130676 Snapc3 protein_coding Interval_113630 chr4 57122796 57123728 + 0 NA intron (ENSMUSG00000028434.12, intron 1 of 25) protein_coding-intron (ENSMUSG00000028434.12, intron 1 of 15) -48809 ENSMUSG00000085967.1 ENSMUSG00000085967 ENSMUST00000152074 Gm12530 antisense Interval_51995 chr14 34489125 34489353 + 0 NA intron (ENSMUSG00000021796.15, intron 1 of 4) protein_coding-intron (ENSMUSG00000021796.15, intron 1 of 12) -12476 ENSMUSG00000090779.1 ENSMUSG00000090779 ENSMUST00000171248 Gm17110 antisense Interval_137055 chr6 67009521 67009779 + 0 NA promoter-TSS (ENSMUSG00000107634.1) antisense-promoter-TSS (ENSMUSG00000107634.1) -1237 ENSMUSG00000107634.1 ENSMUSG00000107634 ENSMUST00000204824 Gm36816 antisense Interval_49653 chr13 113815254 113817350 + 0 NA intron (ENSMUSG00000042348.10, intron 1 of 3) protein_coding-intron (ENSMUSG00000042348.10, intron 1 of 4) 21709 ENSMUSG00000042348.10 ENSMUSG00000042348 ENSMUST00000224068 Arl15 protein_coding Interval_133082 chr5 149702050 149703319 + 0 NA intron (ENSMUSG00000051950.10, intron 2 of 14) protein_coding-intron (ENSMUSG00000051950.10, intron 2 of 14) -36848 ENSMUSG00000051950.10 ENSMUSG00000051950 ENSMUST00000201088 B3glct protein_coding Interval_130794 chr5 130565040 130565262 + 0 NA intron (ENSMUSG00000060371.12, intron 2 of 2) protein_coding-intron (ENSMUSG00000060371.12, intron 3 of 6) 53400 ENSMUSG00000106849.1 ENSMUSG00000106849 ENSMUST00000201334 Gm43418 TEC Interval_81554 chr18 61659849 61660541 + 0 NA intron (ENSMUSG00000097324.8, intron 1 of 3) lincRNA-intron (ENSMUSG00000097324.8, intron 1 of 2) 5295 ENSMUSG00000097324.8 ENSMUSG00000097324 ENSMUST00000181155 Carmn lincRNA Interval_59820 chr15 59555975 59556197 + 0 NA intron (ENSMUSG00000059586.10, intron 5 of 7) protein_coding-intron (ENSMUSG00000059586.10, intron 4 of 6) -62504 ENSMUSG00000115896.1 ENSMUSG00000115896 ENSMUST00000229684 Gm36677 lincRNA Interval_855 chr1 12710931 12711909 + 0 NA intron (ENSMUSG00000016918.15, intron 1 of 20) protein_coding-intron (ENSMUSG00000016918.15, intron 1 of 21) -8044 ENSMUSG00000016918.15 ENSMUSG00000016918 ENSMUST00000185780 Sulf1 protein_coding Interval_31477 chr11 100912351 100912626 + 0 NA intron (ENSMUSG00000004040.16, intron 1 of 23) protein_coding-intron (ENSMUSG00000004040.16, intron 1 of 23) -13181 ENSMUSG00000004040.16 ENSMUSG00000004040 ENSMUST00000130686 Stat3 protein_coding Interval_86562 chr19 41710542 41710816 + 0 NA intron (ENSMUSG00000025020.11, intron 3 of 11) protein_coding-intron (ENSMUSG00000025020.11, intron 4 of 36) 32807 ENSMUSG00000025020.11 ENSMUSG00000025020 ENSMUST00000171586 Slit1 protein_coding Interval_73460 chr17 37482551 37482838 + 0 NA exon (ENSMUSG00000016283.13, exon 3 of 4) protein_coding-exon (ENSMUSG00000016283.13, exon 3 of 4) 858 ENSMUSG00000016283.13 ENSMUSG00000016283 ENSMUST00000171139 H2-M2 protein_coding Interval_142802 chr6 145823114 145824114 + 0 NA Intergenic Intergenic -39683 ENSMUSG00000108126.1 ENSMUSG00000108126 ENSMUST00000203443 Gm43909 TEC Interval_117215 chr4 120659009 120659866 + 0 NA Intergenic Intergenic -7135 ENSMUSG00000070803.6 ENSMUSG00000070803 ENSMUST00000094814 Cited4 protein_coding Interval_155716 chr8 36387125 36387651 + 0 NA Intergenic Intergenic -13755 ENSMUSG00000098154.2 ENSMUSG00000098154 ENSMUST00000183049 Gm5787 processed_pseudogene Interval_30168 chr11 90039517 90039908 + 0 NA Intergenic Intergenic 9364 ENSMUSG00000069763.3 ENSMUSG00000069763 ENSMUST00000092788 Tmem100 protein_coding Interval_46144 chr13 61998437 61999073 + 0 NA Intergenic Intergenic -7913 ENSMUSG00000113014.1 ENSMUSG00000113014 ENSMUST00000221926 Selenok-ps8 processed_pseudogene Interval_39877 chr12 99315911 99316484 + 0 NA intron (ENSMUSG00000033713.12, intron 3 of 5) protein_coding-intron (ENSMUSG00000033713.12, intron 3 of 5) -19577 ENSMUSG00000093465.1 ENSMUSG00000093465 ENSMUST00000176552 Gm20682 sense_intronic Interval_165290 chr9 46048577 46049065 + 0 NA intron (ENSMUSG00000034135.15, intron 1 of 24) protein_coding-intron (ENSMUSG00000034135.15, intron 1 of 22) -64038 ENSMUSG00000003131.7 ENSMUSG00000003131 ENSMUST00000214996 Pafah1b2 protein_coding Interval_108909 chr3 133215727 133215946 + 0 NA intron (ENSMUSG00000040969.14, intron 1 of 3) protein_coding-intron (ENSMUSG00000040969.14, intron 1 of 13) 19113 ENSMUSG00000040969.14 ENSMUSG00000040969 ENSMUST00000161932 Arhgef38 protein_coding Interval_65520 chr16 23045623 23046867 + 0 NA promoter-TSS (ENSMUSG00000087979.1) snRNA-promoter-TSS (ENSMUSG00000087979.1) -714 ENSMUSG00000087979.1 ENSMUSG00000087979 ENSMUST00000157354 Gm23715 snRNA Interval_66716 chr16 36563565 36564223 + 0 NA Intergenic Intergenic -1753 ENSMUSG00000051980.13 ENSMUSG00000051980 ENSMUST00000174750 Casr protein_coding Interval_16259 chr10 61756769 61757071 + 0 NA intron (ENSMUSG00000020086.6, intron 2 of 8) protein_coding-intron (ENSMUSG00000020086.6, intron 2 of 8) -17817 ENSMUSG00000093017.1 ENSMUSG00000093017 ENSMUST00000175276 Mir5108 miRNA Interval_22004 chr11 5724603 5724981 + 0 NA intron (ENSMUSG00000049680.17, intron 2 of 4) protein_coding-intron (ENSMUSG00000049680.17, intron 2 of 4) -17105 ENSMUSG00000020477.10 ENSMUSG00000020477 ENSMUST00000123697 Mrps24 protein_coding Interval_93790 chr2 76903227 76903818 + 0 NA exon (ENSMUSG00000051747.15, exon 49 of 347) protein_coding-exon (ENSMUSG00000051747.15, exon 49 of 347) -66708 ENSMUSG00000051747.15 ENSMUSG00000051747 ENSMUST00000147048 Ttn protein_coding Interval_65340 chr16 21687983 21688305 + 0 NA intron (ENSMUSG00000043391.10, intron 2 of 2) protein_coding-intron (ENSMUSG00000043391.10, intron 1 of 1) 6436 ENSMUSG00000043391.10 ENSMUSG00000043391 ENSMUST00000232634 2510009E07Rik protein_coding Interval_27669 chr11 69394998 69396370 + 0 NA promoter-TSS (ENSMUSG00000044795.12) protein_coding-promoter-TSS (ENSMUSG00000044795.12) 37 ENSMUSG00000059278.9 ENSMUSG00000059278 ENSMUST00000124932 Naa38 protein_coding Interval_142783 chr6 145633140 145633518 + 0 NA Intergenic Intergenic 17572 ENSMUSG00000067338.6 ENSMUSG00000067338 ENSMUST00000087445 Tuba3b protein_coding Interval_91211 chr2 35964082 35964525 + 0 NA intron (ENSMUSG00000026885.13, intron 1 of 7) protein_coding-intron (ENSMUSG00000026885.13, intron 1 of 9) -11889 ENSMUSG00000026885.13 ENSMUSG00000026885 ENSMUST00000162172 Ttll11 protein_coding Interval_149862 chr7 102058486 102058764 + 0 NA intron (ENSMUSG00000070426.12, intron 1 of 8) protein_coding-intron (ENSMUSG00000070426.12, intron 1 of 8) 6533 ENSMUSG00000070426.12 ENSMUSG00000070426 ENSMUST00000130074 Rnf121 protein_coding Interval_157604 chr8 71670418 71671914 + 0 NA intron (ENSMUSG00000034799.16, intron 1 of 44) protein_coding-intron (ENSMUSG00000034799.16, intron 1 of 43) 570 ENSMUSG00000034799.16 ENSMUSG00000034799 ENSMUST00000175780 Unc13a protein_coding Interval_48157 chr13 96767876 96768148 + 0 NA intron (ENSMUSG00000109561.1, intron 3 of 19) protein_coding-intron (ENSMUSG00000109561.1, intron 3 of 19) 9918 ENSMUSG00000113879.1 ENSMUSG00000113879 ENSMUST00000222172 Gm48580 processed_pseudogene Interval_19850 chr10 110420863 110421075 + 0 NA intron (ENSMUSG00000020181.18, intron 1 of 40) protein_coding-intron (ENSMUSG00000020181.18, intron 1 of 4) 35235 ENSMUSG00000020181.18 ENSMUSG00000020181 ENSMUST00000160159 Nav3 protein_coding Interval_30945 chr11 97338315 97339066 + 0 NA exon (ENSMUSG00000070337.4, exon 11 of 11) protein_coding-exon (ENSMUSG00000070337.4, exon 11 of 11) 13387 ENSMUSG00000070337.4 ENSMUSG00000070337 ENSMUST00000162544 Gpr179 protein_coding Interval_137360 chr6 71691033 71692616 + 0 NA Intergenic Intergenic 8526 ENSMUSG00000108813.1 ENSMUSG00000108813 ENSMUST00000205423 Rpl19-ps9 processed_pseudogene Interval_51199 chr14 24795303 24795660 + 0 NA Intergenic Intergenic -38154 ENSMUSG00000114965.1 ENSMUSG00000114965 ENSMUST00000223735 Gm47906 lincRNA Interval_86475 chr19 40894054 40895625 + 0 NA TTS (ENSMUSG00000099118.1) miRNA-TTS (ENSMUSG00000099118.1) 134 ENSMUSG00000049164.7 ENSMUSG00000049164 ENSMUST00000235207 Zfp518a protein_coding Interval_30219 chr11 90782588 90784082 + 0 NA promoter-TSS (ENSMUSG00000088020.1) snoRNA-promoter-TSS (ENSMUSG00000088020.1) -786 ENSMUSG00000088020.1 ENSMUSG00000088020 ENSMUST00000157395 Gm22762 snoRNA Interval_109370 chr3 140586538 140586818 + 0 NA Intergenic Intergenic 40754 ENSMUSG00000106159.1 ENSMUSG00000106159 ENSMUST00000199170 Gm31211 processed_pseudogene Interval_86544 chr19 41600310 41601323 + 0 NA exon (ENSMUSG00000025020.11, exon 36 of 36) protein_coding-exon (ENSMUSG00000025020.11, exon 36 of 36) 12165 ENSMUSG00000098286.1 ENSMUSG00000098286 ENSMUST00000183602 Mir8091 miRNA Interval_67791 chr16 57221011 57221203 + 0 NA intron (ENSMUSG00000022749.8, intron 1 of 7) protein_coding-intron (ENSMUSG00000022749.8, intron 1 of 17) -19935 ENSMUSG00000022749.8 ENSMUSG00000022749 ENSMUST00000227359 Tbc1d23 protein_coding Interval_55794 chr14 100220133 100220634 + 0 NA TTS (ENSMUSG00000084991.1) processed_pseudogene-TTS (ENSMUSG00000084991.1) 897 ENSMUSG00000084991.1 ENSMUSG00000084991 ENSMUST00000155141 Gm16260 processed_pseudogene Interval_141160 chr6 125330750 125331297 + 0 NA TTS (ENSMUSG00000030340.16) protein_coding-TTS (ENSMUSG00000030340.16) 9502 ENSMUSG00000030340.16 ENSMUSG00000030340 ENSMUST00000177329 Scnn1a protein_coding Interval_171217 chr9 115288924 115290499 + 0 NA intron (ENSMUSG00000032437.10, intron 1 of 15) protein_coding-intron (ENSMUSG00000032437.10, intron 1 of 15) -7730 ENSMUSG00000111564.1 ENSMUSG00000111564 ENSMUST00000214793 Stmn1-rs1 processed_pseudogene Interval_19478 chr10 100004239 100004489 + 0 NA Intergenic Intergenic 15743 ENSMUSG00000112299.1 ENSMUSG00000112299 ENSMUST00000219489 Gm17870 processed_pseudogene Interval_19657 chr10 107389427 107390198 + 0 NA intron (ENSMUSG00000019906.15, intron 4 of 5) protein_coding-intron (ENSMUSG00000019906.15, intron 4 of 5) 47547 ENSMUSG00000102934.1 ENSMUSG00000102934 ENSMUST00000194653 Gm38117 TEC Interval_169027 chr9 90446682 90447222 + 0 NA Intergenic Intergenic 94957 ENSMUSG00000065881.1 ENSMUSG00000065881 ENSMUST00000083947 Gm22866 snRNA Interval_15674 chr10 53412714 53413622 + 0 NA intron (ENSMUSG00000112132.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000112132.1, intron 1 of 2) 3286 ENSMUSG00000112132.1 ENSMUSG00000112132 ENSMUST00000218737 Gm36229 lincRNA Interval_140817 chr6 121560805 121561036 + 0 NA TTS (ENSMUSG00000107752.1) processed_pseudogene-TTS (ENSMUSG00000107752.1) 719 ENSMUSG00000107752.1 ENSMUSG00000107752 ENSMUST00000205095 Gm43934 processed_pseudogene Interval_105789 chr3 89340556 89340890 + 0 NA promoter-TSS (ENSMUSG00000028041.17) protein_coding-promoter-TSS (ENSMUSG00000028041.17) -2695 ENSMUSG00000028040.7 ENSMUSG00000028040 ENSMUST00000029674 Efna4 protein_coding Interval_170067 chr9 104194101 104194925 + 0 NA intron (ENSMUSG00000032560.14, intron 3 of 3) protein_coding-intron (ENSMUSG00000032560.14, intron 29 of 55) -7578 ENSMUSG00000032560.14 ENSMUSG00000032560 ENSMUST00000189299 Dnajc13 protein_coding Interval_4597 chr1 75343986 75346145 + 0 NA Intergenic Intergenic -16461 ENSMUSG00000026208.9 ENSMUSG00000026208 ENSMUST00000125948 Des protein_coding Interval_152518 chr7 133771834 133772085 + 0 NA intron (ENSMUSG00000030986.13, intron 1 of 11) protein_coding-intron (ENSMUSG00000030986.13, intron 1 of 11) 4657 ENSMUSG00000030986.13 ENSMUSG00000030986 ENSMUST00000135989 Dhx32 protein_coding Interval_134213 chr6 23079970 23081338 + 0 NA intron (ENSMUSG00000029695.13, intron 18 of 23) protein_coding-intron (ENSMUSG00000029695.13, intron 18 of 23) 52262 ENSMUSG00000029695.13 ENSMUSG00000029695 ENSMUST00000152280 Aass protein_coding Interval_81697 chr18 63658588 63659015 + 0 NA Intergenic Intergenic 49993 ENSMUSG00000024583.3 ENSMUSG00000024583 ENSMUST00000236253 Txnl1 protein_coding Interval_146928 chr7 55938784 55940107 + 0 NA intron (ENSMUSG00000030452.16, intron 1 of 3) protein_coding-intron (ENSMUSG00000030452.16, intron 4 of 6) 5502 ENSMUSG00000030452.16 ENSMUSG00000030452 ENSMUST00000143325 Nipa2 protein_coding Interval_16140 chr10 60985096 60985601 + 0 NA Intergenic Intergenic 24625 ENSMUSG00000080526.1 ENSMUSG00000080526 ENSMUST00000116876 Mir466j miRNA Interval_302 chr1 3264126 3264512 + 0 NA intron (ENSMUSG00000051951.5, intron 2 of 2) protein_coding-intron (ENSMUSG00000051951.5, intron 2 of 2) 11562 ENSMUSG00000102851.1 ENSMUSG00000102851 ENSMUST00000192857 Gm18956 processed_pseudogene Interval_160042 chr8 105979246 105979632 + 0 NA promoter-TSS (ENSMUSG00000031898.9) protein_coding-promoter-TSS (ENSMUSG00000031898.9) -10 ENSMUSG00000031898.9 ENSMUSG00000031898 ENSMUST00000034371 Dpep3 protein_coding Interval_158536 chr8 84322036 84322246 + 0 NA Intergenic Intergenic -16498 ENSMUSG00000034656.18 ENSMUSG00000034656 ENSMUST00000130507 Cacna1a protein_coding Interval_9388 chr1 156726820 156727115 + 0 NA Intergenic Intergenic -28082 ENSMUSG00000033557.17 ENSMUSG00000033557 ENSMUST00000147931 Fam20b protein_coding Interval_125994 chr5 76702048 76703100 + 0 NA intron (ENSMUSG00000036377.19, intron 1 of 11) protein_coding-intron (ENSMUSG00000036377.19, intron 1 of 4) 39939 ENSMUSG00000083874.1 ENSMUSG00000083874 ENSMUST00000121248 Gm7494 processed_pseudogene Interval_174744 chrX 164508557 164509433 + 0 NA intron (ENSMUSG00000031384.2, intron 1 of 6) protein_coding-intron (ENSMUSG00000031384.2, intron 1 of 6) 2668 ENSMUSG00000031384.2 ENSMUSG00000031384 ENSMUST00000033756 Asb9 protein_coding Interval_70234 chr17 7137247 7139304 + 0 NA Intergenic Intergenic -31852 ENSMUSG00000023809.10 ENSMUSG00000023809 ENSMUST00000231530 Rps6ka2 protein_coding Interval_136065 chr6 50408396 50408717 + 0 NA intron (ENSMUSG00000029822.15, intron 1 of 5) protein_coding-intron (ENSMUSG00000029822.15, intron 2 of 21) -56599 ENSMUSG00000029822.15 ENSMUSG00000029822 ENSMUST00000154333 Osbpl3 protein_coding Interval_96082 chr2 119662408 119663352 + 0 NA promoter-TSS (ENSMUSG00000027305.9) protein_coding-promoter-TSS (ENSMUSG00000027305.9) -68 ENSMUSG00000027305.9 ENSMUSG00000027305 ENSMUST00000131596 Ndufaf1 protein_coding Interval_31802 chr11 102973657 102974009 + 0 NA Intergenic Intergenic -9446 ENSMUSG00000085338.1 ENSMUSG00000085338 ENSMUST00000138424 2410004I01Rik lincRNA Interval_70826 chr17 15141018 15141315 + 0 NA Intergenic Intergenic -10993 ENSMUSG00000116655.1 ENSMUSG00000116655 ENSMUST00000231330 Gm35455 lincRNA Interval_92816 chr2 65870818 65871141 + 0 NA intron (ENSMUSG00000044647.16, intron 2 of 2) protein_coding-intron (ENSMUSG00000044647.16, intron 1 of 5) -10360 ENSMUSG00000052865.5 ENSMUSG00000052865 ENSMUST00000155722 Gm13619 antisense Interval_105986 chr3 90464542 90466740 + 0 NA exon (ENSMUSG00000027931.12, exon 1 of 22) protein_coding-exon (ENSMUSG00000027931.12, exon 1 of 22) 5318 ENSMUSG00000105746.1 ENSMUSG00000105746 ENSMUST00000196464 Gm43595 unprocessed_pseudogene Interval_165841 chr9 53747511 53747968 + 0 NA intron (ENSMUSG00000111084.1, intron 1 of 1) processed_pseudogene-intron (ENSMUSG00000111084.1, intron 1 of 1) 1670 ENSMUSG00000111084.1 ENSMUSG00000111084 ENSMUST00000213450 Gm48292 processed_pseudogene Interval_89182 chr2 17892733 17893148 + 0 NA Intergenic Intergenic -94956 ENSMUSG00000081851.1 ENSMUSG00000081851 ENSMUST00000120245 Gm13323 processed_pseudogene Interval_57056 chr15 5178773 5179510 + 0 NA exon (ENSMUSG00000050697.9, exon 9 of 9) protein_coding-exon (ENSMUSG00000050697.9, exon 9 of 9) 6582 ENSMUSG00000087532.1 ENSMUSG00000087532 ENSMUST00000150079 Gm15938 antisense Interval_1184 chr1 16687022 16688972 + 0 NA promoter-TSS (ENSMUSG00000025779.10) protein_coding-promoter-TSS (ENSMUSG00000025779.10) -54 ENSMUSG00000025779.10 ENSMUSG00000025779 ENSMUST00000190366 Ly96 protein_coding Interval_45790 chr13 58090688 58090939 + 0 NA intron (ENSMUSG00000014164.15, intron 2 of 14) protein_coding-intron (ENSMUSG00000014164.15, intron 4 of 16) 22779 ENSMUSG00000014164.15 ENSMUSG00000014164 ENSMUST00000160860 Klhl3 protein_coding Interval_103276 chr3 37757800 37758851 + 0 NA Intergenic Intergenic -2712 ENSMUSG00000106441.1 ENSMUSG00000106441 ENSMUST00000196670 Gm42921 lincRNA Interval_117499 chr4 124196803 124197033 + 0 NA Intergenic Intergenic 82259 ENSMUSG00000103541.1 ENSMUSG00000103541 ENSMUST00000193103 Gm37667 TEC Interval_94920 chr2 101755012 101756595 + 0 NA intron (ENSMUSG00000032841.15, intron 4 of 8) protein_coding-intron (ENSMUSG00000032841.15, intron 4 of 8) 41904 ENSMUSG00000032841.15 ENSMUSG00000032841 ENSMUST00000127358 Prr5l protein_coding Interval_114681 chr4 83723010 83723438 + 0 NA intron (ENSMUSG00000052407.17, intron 21 of 25) protein_coding-intron (ENSMUSG00000052407.17, intron 21 of 25) -20453 ENSMUSG00000097942.1 ENSMUSG00000097942 ENSMUST00000182894 Gm26968 sense_intronic Interval_35334 chr12 20763067 20764354 + 0 NA Intergenic Intergenic 40998 ENSMUSG00000101813.1 ENSMUSG00000101813 ENSMUST00000185966 Gm28503 transcribed_processed_pseudogene Interval_137186 chr6 69403453 69403973 + 0 NA Intergenic Intergenic -3369 ENSMUSG00000094262.2 ENSMUSG00000094262 ENSMUST00000198345 Igkv4-62 IG_V_gene Interval_90153 chr2 28592563 28593710 + 0 NA Intergenic Intergenic -1991 ENSMUSG00000089055.1 ENSMUSG00000089055 ENSMUST00000158430 Gm22675 snRNA Interval_154041 chr8 12162792 12163388 + 0 NA Intergenic Intergenic -115729 ENSMUSG00000074473.1 ENSMUSG00000074473 ENSMUST00000098935 A230072I06Rik protein_coding Interval_21827 chr11 4604842 4606043 + 0 NA Intergenic Intergenic -14625 ENSMUSG00000079010.1 ENSMUSG00000079010 ENSMUST00000109941 Gm11032 protein_coding Interval_1599 chr1 29265079 29265281 + 0 NA Intergenic Intergenic 15895 ENSMUSG00000064433.1 ENSMUSG00000064433 ENSMUST00000082499 Gm25586 misc_RNA Interval_62110 chr15 86902555 86904064 + 0 NA Intergenic Intergenic 20773 ENSMUSG00000115957.1 ENSMUSG00000115957 ENSMUST00000229974 Gm49466 lincRNA Interval_51442 chr14 27596196 27596636 + 0 NA Intergenic Intergenic -44258 ENSMUSG00000114482.1 ENSMUSG00000114482 ENSMUST00000225617 Gm7604 processed_pseudogene Interval_62806 chr15 97125777 97126679 + 0 NA Intergenic Intergenic 41016 ENSMUSG00000116295.1 ENSMUSG00000116295 ENSMUST00000229491 Gm32885 lincRNA Interval_141085 chr6 124876645 124877039 + 0 NA intron (ENSMUSG00000023274.14, intron 3 of 6) protein_coding-intron (ENSMUSG00000023274.14, intron 3 of 9) 11357 ENSMUSG00000023274.14 ENSMUSG00000023274 ENSMUST00000130378 Cd4 protein_coding Interval_19824 chr10 109766912 109767162 + 0 NA exon (ENSMUSG00000020181.18, exon 15 of 39) protein_coding-exon (ENSMUSG00000020181.18, exon 15 of 39) 118258 ENSMUSG00000112260.1 ENSMUSG00000112260 ENSMUST00000219153 3110043J17Rik TEC Interval_117479 chr4 124015224 124015653 + 0 NA Intergenic Intergenic 89204 ENSMUSG00000082515.1 ENSMUSG00000082515 ENSMUST00000118389 Gm12902 processed_pseudogene Interval_36843 chr12 54577415 54577727 + 0 NA Intergenic Intergenic -45019 ENSMUSG00000112145.1 ENSMUSG00000112145 ENSMUST00000219812 Gm6218 processed_pseudogene Interval_164755 chr9 41156295 41158045 + 0 NA intron (ENSMUSG00000032020.15, intron 1 of 3) protein_coding-intron (ENSMUSG00000032020.15, intron 1 of 13) -2254 ENSMUSG00000110747.1 ENSMUSG00000110747 ENSMUST00000215869 Gm35657 lincRNA Interval_19454 chr10 99460183 99461905 + 0 NA promoter-TSS (ENSMUSG00000112082.1) lincRNA-promoter-TSS (ENSMUSG00000112082.1) -814 ENSMUSG00000112082.1 ENSMUSG00000112082 ENSMUST00000218838 Gm35035 lincRNA Interval_37453 chr12 69090110 69090293 + 0 NA Intergenic Intergenic 30146 ENSMUSG00000113716.1 ENSMUSG00000113716 ENSMUST00000222118 Gm47518 lincRNA Interval_105105 chr3 81277190 81277562 + 0 NA Intergenic Intergenic 128196 ENSMUSG00000102223.1 ENSMUSG00000102223 ENSMUST00000193327 Gm37300 processed_pseudogene Interval_153075 chr7 141193299 141195564 + 0 NA promoter-TSS (ENSMUSG00000025499.18) protein_coding-promoter-TSS (ENSMUSG00000025499.18) -427 ENSMUSG00000025499.18 ENSMUSG00000025499 ENSMUST00000124971 Hras protein_coding Interval_87964 chr19 57411064 57412373 + 0 NA Intergenic Intergenic 11776 ENSMUSG00000117927.1 ENSMUSG00000117927 ENSMUST00000237878 Gm50271 lincRNA Interval_123275 chr5 31067058 31067366 + 0 NA TTS (ENSMUSG00000013629.16) protein_coding-TTS (ENSMUSG00000013629.16) -6905 ENSMUSG00000013629.16 ENSMUSG00000013629 ENSMUST00000200917 Cad protein_coding Interval_2128 chr1 36611627 36612103 + 0 NA intron (ENSMUSG00000046337.17, intron 6 of 14) protein_coding-intron (ENSMUSG00000046337.17, intron 6 of 9) 10063 ENSMUSG00000089906.1 ENSMUSG00000089906 ENSMUST00000161062 Gm6428 processed_pseudogene Interval_75702 chr17 70755018 70755929 + 0 NA exon (ENSMUSG00000097282.1, exon 1 of 3) antisense-exon (ENSMUSG00000097282.1, exon 1 of 3) 109 ENSMUSG00000097282.1 ENSMUSG00000097282 ENSMUST00000181546 5031415H12Rik antisense Interval_56332 chr14 117649969 117650204 + 0 NA intron (ENSMUSG00000058571.11, intron 4 of 9) protein_coding-intron (ENSMUSG00000058571.11, intron 4 of 8) 303761 ENSMUSG00000098648.1 ENSMUSG00000098648 ENSMUST00000183564 Mir6239 miRNA Interval_30697 chr11 95958999 95959701 + 0 NA exon (ENSMUSG00000013415.9, exon 15 of 15) protein_coding-exon (ENSMUSG00000013415.9, exon 15 of 15) 4033 ENSMUSG00000093358.1 ENSMUSG00000093358 ENSMUST00000175617 Mir3063 miRNA Interval_67462 chr16 49016743 49017173 + 0 NA intron (ENSMUSG00000033031.13, intron 2 of 3) protein_coding-intron (ENSMUSG00000033031.13, intron 19 of 20) 1121 ENSMUSG00000033031.13 ENSMUSG00000033031 ENSMUST00000149004 Cip2a protein_coding Interval_42271 chr13 11465707 11466127 + 0 NA Intergenic Intergenic -39019 ENSMUSG00000077618.1 ENSMUSG00000077618 ENSMUST00000104430 Gm25496 snoRNA Interval_55070 chr14 77689145 77690045 + 0 NA intron (ENSMUSG00000022012.9, intron 14 of 16) protein_coding-intron (ENSMUSG00000022012.9, intron 16 of 18) -55735 ENSMUSG00000115363.1 ENSMUSG00000115363 ENSMUST00000227098 Gm49003 antisense Interval_98364 chr2 151842477 151843446 + 0 NA promoter-TSS (ENSMUSG00000032852.3) protein_coding-promoter-TSS (ENSMUSG00000032852.3) 34 ENSMUSG00000032852.3 ENSMUSG00000032852 ENSMUST00000042217 Rspo4 protein_coding Interval_55443 chr14 87384785 87385359 + 0 NA Intergenic Intergenic 38827 ENSMUSG00000088536.1 ENSMUSG00000088536 ENSMUST00000157911 Gm23278 snoRNA Interval_76178 chr17 76195551 76195763 + 0 NA Intergenic Intergenic -84353 ENSMUSG00000065293.1 ENSMUSG00000065293 ENSMUST00000083359 Gm26124 misc_RNA Interval_55820 chr14 100600844 100601030 + 0 NA Intergenic Intergenic 42305 ENSMUSG00000115506.1 ENSMUSG00000115506 ENSMUST00000228938 Gm49237 lincRNA Interval_128653 chr5 114521462 114521724 + 0 NA Intergenic Intergenic -29696 ENSMUSG00000086302.1 ENSMUSG00000086302 ENSMUST00000156209 Gm13790 lincRNA Interval_63136 chr15 99282813 99285462 + 0 NA intron (ENSMUSG00000078907.2, intron 2 of 3) protein_coding-intron (ENSMUSG00000078907.2, intron 2 of 7) 11751 ENSMUSG00000078907.2 ENSMUSG00000078907 ENSMUST00000230608 Fam186b protein_coding Interval_35768 chr12 29141028 29141607 + 0 NA promoter-TSS (ENSMUSG00000113986.1) lincRNA-promoter-TSS (ENSMUSG00000113986.1) -612 ENSMUSG00000113986.1 ENSMUSG00000113986 ENSMUST00000222225 Gm31333 lincRNA Interval_95656 chr2 113647812 113648746 + 0 NA intron (ENSMUSG00000044042.19, intron 14 of 17) protein_coding-intron (ENSMUSG00000044042.19, intron 13 of 16) 60271 ENSMUSG00000084798.1 ENSMUSG00000084798 ENSMUST00000123377 4930533B01Rik antisense Interval_103816 chr3 53246969 53247651 + 0 NA intron (ENSMUSG00000048332.13, intron 3 of 3) protein_coding-intron (ENSMUSG00000048332.13, intron 3 of 3) 17985 ENSMUSG00000048332.13 ENSMUSG00000048332 ENSMUST00000196913 Lhfp protein_coding Interval_23582 chr11 23556811 23557647 + 0 NA TTS (ENSMUSG00000085415.1) processed_transcript-TTS (ENSMUSG00000085415.1) 1613 ENSMUSG00000085415.1 ENSMUSG00000085415 ENSMUST00000125204 Selenok-ps1 processed_transcript Interval_44258 chr13 43124314 43124844 + 0 NA intron (ENSMUSG00000054728.17, intron 10 of 13) protein_coding-intron (ENSMUSG00000054728.17, intron 8 of 11) 1138 ENSMUSG00000087202.1 ENSMUSG00000087202 ENSMUST00000142286 Gm15813 antisense Interval_125468 chr5 67399871 67400302 + 0 NA exon (ENSMUSG00000092060.4, exon 4 of 5) protein_coding-exon (ENSMUSG00000092060.4, exon 4 of 5) 27531 ENSMUSG00000092060.4 ENSMUSG00000092060 ENSMUST00000201972 Bend4 protein_coding Interval_101516 chr3 3388096 3388629 + 0 NA Intergenic Intergenic -121335 ENSMUSG00000103028.1 ENSMUSG00000103028 ENSMUST00000195392 Gm8747 processed_pseudogene Interval_15149 chr10 42913021 42913659 + 0 NA intron (ENSMUSG00000044770.14, intron 3 of 5) protein_coding-intron (ENSMUSG00000044770.14, intron 3 of 8) -24543 ENSMUSG00000111086.1 ENSMUSG00000111086 ENSMUST00000214070 Gm48671 lincRNA Interval_145143 chr7 30286697 30287588 + 0 NA intron (ENSMUSG00000013928.13, intron 2 of 2) protein_coding-intron (ENSMUSG00000013928.13, intron 2 of 3) -4587 ENSMUSG00000013921.15 ENSMUSG00000013921 ENSMUST00000132844 Clip3 protein_coding Interval_92388 chr2 59430744 59431171 + 0 NA Intergenic Intergenic -31176 ENSMUSG00000080982.1 ENSMUSG00000080982 ENSMUST00000118339 Gm13549 processed_pseudogene Interval_71529 chr17 24350973 24352866 + 0 NA promoter-TSS (ENSMUSG00000024130.16) protein_coding-promoter-TSS (ENSMUSG00000024130.16) -151 ENSMUSG00000024130.16 ENSMUSG00000024130 ENSMUST00000117337 Abca3 protein_coding Interval_94539 chr2 92023296 92024774 + 0 NA exon (ENSMUSG00000027230.9, exon 1 of 12) protein_coding-exon (ENSMUSG00000027230.9, exon 1 of 12) 467 ENSMUSG00000027230.9 ENSMUSG00000027230 ENSMUST00000028663 Creb3l1 protein_coding Interval_111766 chr4 28129354 28129684 + 0 NA Intergenic Intergenic 62342 ENSMUSG00000082977.1 ENSMUSG00000082977 ENSMUST00000117938 Gm11911 processed_pseudogene Interval_73320 chr17 36189430 36189938 + 0 NA exon (ENSMUSG00000054128.16, exon 2 of 6) protein_coding-exon (ENSMUSG00000054128.16, exon 2 of 6) 438 ENSMUSG00000054128.16 ENSMUSG00000054128 ENSMUST00000095300 H2-T3 protein_coding Interval_36128 chr12 36165057 36166495 + 0 NA intron (ENSMUSG00000036188.4, intron 1 of 6) protein_coding-intron (ENSMUSG00000036188.4, intron 1 of 9) -1550 ENSMUSG00000036188.4 ENSMUSG00000036188 ENSMUST00000220788 Ankmy2 protein_coding Interval_60107 chr15 65799588 65800364 + 0 NA intron (ENSMUSG00000015002.18, intron 1 of 3) protein_coding-intron (ENSMUSG00000015002.18, intron 1 of 22) -51145 ENSMUSG00000015002.18 ENSMUSG00000015002 ENSMUST00000174749 Efr3a protein_coding Interval_80101 chr18 37515121 37516053 + 0 NA exon (ENSMUSG00000044022.5, exon 1 of 1) protein_coding-exon (ENSMUSG00000044022.5, exon 1 of 1) 1966 ENSMUSG00000044022.5 ENSMUSG00000044022 ENSMUST00000061405 Pcdhb21 protein_coding Interval_132041 chr5 142448125 142448413 + 0 NA intron (ENSMUSG00000056493.9, intron 2 of 8) protein_coding-intron (ENSMUSG00000056493.9, intron 2 of 8) -15675 ENSMUSG00000039623.13 ENSMUSG00000039623 ENSMUST00000197293 Ap5z1 protein_coding Interval_126663 chr5 91911014 91911316 + 0 NA TTS (ENSMUSG00000107301.1) lincRNA-TTS (ENSMUSG00000107301.1) 2238 ENSMUSG00000107301.1 ENSMUSG00000107301 ENSMUST00000202249 Gm43688 lincRNA Interval_69753 chr16 96037881 96038134 + 0 NA exon (ENSMUSG00000085884.1, exon 2 of 2) processed_transcript-exon (ENSMUSG00000085884.1, exon 2 of 2) 1917 ENSMUSG00000085884.1 ENSMUSG00000085884 ENSMUST00000146222 Gm15342 processed_transcript Interval_59928 chr15 62031617 62032603 + 0 NA Intergenic Intergenic -5919 ENSMUSG00000098998.1 ENSMUSG00000098998 ENSMUST00000184473 Gm27913 misc_RNA Interval_156250 chr8 46551623 46552604 + 0 NA promoter-TSS (ENSMUSG00000031629.14) protein_coding-promoter-TSS (ENSMUSG00000031629.14) 75 ENSMUSG00000031629.14 ENSMUSG00000031629 ENSMUST00000136724 Cenpu protein_coding Interval_158634 chr8 84882866 84883357 + 0 NA intron (ENSMUSG00000003824.12, intron 1 of 1) protein_coding-intron (ENSMUSG00000003824.12, intron 2 of 3) 10810 ENSMUSG00000003809.14 ENSMUSG00000003809 ENSMUST00000142748 Gcdh protein_coding Interval_106699 chr3 99177818 99178607 + 0 NA intron (ENSMUSG00000004233.14, intron 1 of 3) protein_coding-intron (ENSMUSG00000004233.14, intron 1 of 5) 3069 ENSMUSG00000105798.1 ENSMUSG00000105798 ENSMUST00000198118 Gm18982 processed_pseudogene Interval_48016 chr13 95249609 95250427 + 0 NA intron (ENSMUSG00000021684.17, intron 1 of 12) protein_coding-intron (ENSMUSG00000021684.17, intron 1 of 4) -27205 ENSMUSG00000021684.17 ENSMUSG00000021684 ENSMUST00000162716 Pde8b protein_coding Interval_63293 chr15 100145222 100145408 + 0 NA intron (ENSMUSG00000023026.16, intron 4 of 37) protein_coding-intron (ENSMUSG00000023026.16, intron 4 of 37) -17412 ENSMUSG00000023026.16 ENSMUSG00000023026 ENSMUST00000135658 Dip2b protein_coding Interval_135767 chr6 47178231 47179113 + 0 NA intron (ENSMUSG00000039419.17, intron 20 of 23) protein_coding-intron (ENSMUSG00000039419.17, intron 20 of 23) 133516 ENSMUSG00000107952.1 ENSMUSG00000107952 ENSMUST00000203583 Gm6352 processed_pseudogene Interval_88607 chr2 6602161 6602420 + 0 NA intron (ENSMUSG00000002107.18, intron 7 of 13) protein_coding-intron (ENSMUSG00000002107.18, intron 9 of 15) 122600 ENSMUSG00000102599.1 ENSMUSG00000102599 ENSMUST00000194293 Gm38386 TEC Interval_4147 chr1 70725504 70726366 + 0 NA promoter-TSS (ENSMUSG00000045648.15) protein_coding-promoter-TSS (ENSMUSG00000045648.15) 12 ENSMUSG00000045648.15 ENSMUSG00000045648 ENSMUST00000162182 Vwc2l protein_coding Interval_141743 chr6 134161086 134161889 + 0 NA intron (ENSMUSG00000030199.16, intron 2 of 4) protein_coding-intron (ENSMUSG00000030199.16, intron 2 of 7) 10520 ENSMUSG00000091438.1 ENSMUSG00000091438 ENSMUST00000164616 Gm17088 antisense Interval_9862 chr1 163383605 163383814 + 0 NA Intergenic Intergenic -18574 ENSMUSG00000088951.1 ENSMUSG00000088951 ENSMUST00000158326 Gm24940 snRNA Interval_53485 chr14 57790026 57790328 + 0 NA Intergenic Intergenic -8247 ENSMUSG00000092784.1 ENSMUSG00000092784 ENSMUST00000175043 Mir3077 miRNA Interval_153207 chr7 142404753 142405718 + 0 NA Intergenic Intergenic -17416 ENSMUSG00000007891.16 ENSMUSG00000007891 ENSMUST00000153679 Ctsd protein_coding Interval_66368 chr16 33437971 33438178 + 0 NA intron (ENSMUSG00000022811.17, intron 4 of 7) protein_coding-intron (ENSMUSG00000022811.17, intron 4 of 8) 57211 ENSMUSG00000022811.17 ENSMUSG00000022811 ENSMUST00000089677 Zfp148 protein_coding Interval_21778 chr11 4296695 4296974 + 0 NA Intergenic Intergenic 11374 ENSMUSG00000085512.1 ENSMUSG00000085512 ENSMUST00000127224 Gm11958 lincRNA Interval_44877 chr13 49307157 49307577 + 0 NA intron (ENSMUSG00000037946.11, intron 2 of 14) protein_coding-intron (ENSMUSG00000037946.11, intron 2 of 14) 1873 ENSMUSG00000037946.11 ENSMUSG00000037946 ENSMUST00000110086 Fgd3 protein_coding Interval_62309 chr15 89656247 89657143 + 0 NA Intergenic Intergenic -72153 ENSMUSG00000022621.16 ENSMUSG00000022621 ENSMUST00000171142 Rabl2 protein_coding Interval_114590 chr4 82815024 82815444 + 0 NA intron (ENSMUSG00000028403.15, intron 6 of 7) protein_coding-intron (ENSMUSG00000028403.15, intron 7 of 8) 44327 ENSMUSG00000028403.15 ENSMUSG00000028403 ENSMUST00000156055 Zdhhc21 protein_coding Interval_130831 chr5 131075682 131077096 + 0 NA intron (ENSMUSG00000034040.16, intron 5 of 5) protein_coding-intron (ENSMUSG00000034040.16, intron 5 of 10) -33419 ENSMUSG00000106729.1 ENSMUSG00000106729 ENSMUST00000200842 Gm43165 TEC Interval_134482 chr6 29045092 29045426 + 0 NA Intergenic Intergenic -20203 ENSMUSG00000059201.12 ENSMUSG00000059201 ENSMUST00000169505 Lep protein_coding Interval_7486 chr1 131796745 131797974 + 0 NA promoter-TSS (ENSMUSG00000042251.12) protein_coding-promoter-TSS (ENSMUSG00000042251.12) -14771 ENSMUSG00000042251.12 ENSMUSG00000042251 ENSMUST00000132450 Pm20d1 protein_coding Interval_142059 chr6 136847606 136848367 + 0 NA TTS (ENSMUSG00000030217.2) protein_coding-TTS (ENSMUSG00000030217.2) 263 ENSMUSG00000107899.1 ENSMUSG00000107899 ENSMUST00000204898 Gm44069 TEC Interval_65960 chr16 30549745 30551130 + 0 NA promoter-TSS (ENSMUSG00000022537.18) protein_coding-promoter-TSS (ENSMUSG00000022537.18) -6940 ENSMUSG00000022537.18 ENSMUSG00000022537 ENSMUST00000153380 Tmem44 protein_coding Interval_88438 chr2 5069113 5069477 + 0 NA Intergenic Intergenic 32015 ENSMUSG00000086430.1 ENSMUSG00000086430 ENSMUST00000145585 4930551O13Rik antisense Interval_60762 chr15 76602262 76602460 + 0 NA promoter-TSS (ENSMUSG00000034022.8) protein_coding-promoter-TSS (ENSMUSG00000034022.8) -377 ENSMUSG00000034022.8 ENSMUSG00000034022 ENSMUST00000229447 Cpsf1 protein_coding Interval_20492 chr10 117914322 117916534 + 0 NA Intergenic Intergenic -10031 ENSMUSG00000112500.1 ENSMUSG00000112500 ENSMUST00000217950 4933411E08Rik lincRNA Interval_19582 chr10 103753898 103754749 + 0 NA Intergenic Intergenic 104009 ENSMUSG00000112554.1 ENSMUSG00000112554 ENSMUST00000218181 Gm47224 lincRNA Interval_11078 chr1 179207856 179208138 + 0 NA intron (ENSMUSG00000055067.15, intron 5 of 11) protein_coding-intron (ENSMUSG00000055067.15, intron 2 of 8) -290383 ENSMUSG00000089713.1 ENSMUSG00000089713 ENSMUST00000162545 Gm16564 antisense Interval_25506 chr11 49343190 49343686 + 0 NA Intergenic Intergenic 8250 ENSMUSG00000045421.2 ENSMUSG00000045421 ENSMUST00000062719 Olfr1390 protein_coding Interval_53953 chr14 63743361 63744357 + 0 NA intron (ENSMUSG00000035067.9, intron 1 of 2) protein_coding-intron (ENSMUSG00000035067.9, intron 1 of 2) 16670 ENSMUSG00000076049.4 ENSMUSG00000076049 ENSMUST00000102094 Mir598 miRNA Interval_55748 chr14 99548022 99549101 + 0 NA intron (ENSMUSG00000115580.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000115580.1, intron 1 of 2) 26016 ENSMUSG00000115580.1 ENSMUSG00000115580 ENSMUST00000228876 Gm41230 lincRNA Interval_58708 chr15 37246883 37247107 + 0 NA intron (ENSMUSG00000022286.16, intron 1 of 9) protein_coding-intron (ENSMUSG00000022286.16, intron 1 of 15) -3833 ENSMUSG00000089949.2 ENSMUSG00000089949 ENSMUST00000161571 Gm16137 antisense Interval_41430 chr12 113832194 113832545 + 0 NA Intergenic Intergenic -5240 ENSMUSG00000094134.2 ENSMUSG00000094134 ENSMUST00000192877 Ighv5-15 IG_V_gene Interval_161485 chr8 120675783 120675998 + 0 NA intron (ENSMUSG00000092329.1, intron 1 of 15) protein_coding-intron (ENSMUSG00000092329.1, intron 1 of 15) 7554 ENSMUSG00000031818.12 ENSMUSG00000031818 ENSMUST00000181026 Cox4i1 protein_coding Interval_50673 chr14 17992010 17992278 + 0 NA intron (ENSMUSG00000021779.17, intron 1 of 6) protein_coding-intron (ENSMUSG00000021779.17, intron 4 of 9) 29323 ENSMUSG00000021779.17 ENSMUSG00000021779 ENSMUST00000022304 Thrb protein_coding Interval_166650 chr9 61613722 61613925 + 0 NA Intergenic Intergenic 104100 ENSMUSG00000111381.1 ENSMUSG00000111381 ENSMUST00000213400 Gm34424 transcribed_processed_pseudogene Interval_34935 chr12 13997341 13998860 + 0 NA Intergenic Intergenic -14984 ENSMUSG00000113522.1 ENSMUSG00000113522 ENSMUST00000222663 Gm48479 lincRNA Interval_145260 chr7 31022086 31022277 + 0 NA Intergenic Intergenic 15757 ENSMUSG00000009687.14 ENSMUSG00000009687 ENSMUST00000161259 Fxyd5 protein_coding Interval_41058 chr12 110854832 110855667 + 0 NA TTS (ENSMUSG00000021271.5) protein_coding-TTS (ENSMUSG00000021271.5) 3645 ENSMUSG00000091498.4 ENSMUSG00000091498 ENSMUST00000181662 Mpc1-ps processed_pseudogene Interval_39493 chr12 88450751 88451447 + 0 NA intron (ENSMUSG00000021044.15, intron 4 of 7) protein_coding-intron (ENSMUSG00000021044.15, intron 7 of 10) -8880 ENSMUSG00000113087.1 ENSMUSG00000113087 ENSMUST00000221624 4930473H19Rik antisense Interval_15525 chr10 50747420 50747648 + 0 NA intron (ENSMUSG00000038774.9, intron 30 of 41) protein_coding-intron (ENSMUSG00000038774.9, intron 30 of 41) -10650 ENSMUSG00000112918.1 ENSMUSG00000112918 ENSMUST00000220079 Gm18120 processed_pseudogene Interval_35504 chr12 23251340 23251620 + 0 NA intron (ENSMUSG00000092465.2, intron 3 of 5) unprocessed_pseudogene-intron (ENSMUSG00000092465.2, intron 3 of 5) 51700 ENSMUSG00000096441.1 ENSMUSG00000096441 ENSMUST00000103807 Gm26140 miRNA Interval_137855 chr6 82965633 82966438 + 0 NA intron (ENSMUSG00000030041.9, intron 2 of 9) protein_coding-intron (ENSMUSG00000030041.9, intron 2 of 9) 13255 ENSMUSG00000107701.1 ENSMUSG00000107701 ENSMUST00000203190 Gm19287 processed_pseudogene Interval_121240 chr4 154301565 154302020 + 0 NA promoter-TSS (ENSMUSG00000029032.12) protein_coding-promoter-TSS (ENSMUSG00000029032.12) -129 ENSMUSG00000029032.12 ENSMUSG00000029032 ENSMUST00000152947 Arhgef16 protein_coding Interval_141769 chr6 134348544 134350498 + 0 NA intron (ENSMUSG00000107666.1, intron 3 of 8) antisense-intron (ENSMUSG00000107666.1, intron 3 of 8) -49119 ENSMUSG00000030200.13 ENSMUSG00000030200 ENSMUST00000142612 Bcl2l14 protein_coding Interval_156249 chr8 46546288 46546846 + 0 NA Intergenic Intergenic -5471 ENSMUSG00000031629.14 ENSMUSG00000031629 ENSMUST00000136724 Cenpu protein_coding Interval_101393 chr2 181003100 181003391 + 0 NA intron (ENSMUSG00000016356.18, intron 19 of 35) protein_coding-intron (ENSMUSG00000016356.18, intron 20 of 36) 16710 ENSMUSG00000016356.18 ENSMUSG00000016356 ENSMUST00000155425 Col20a1 protein_coding Interval_115621 chr4 101443725 101444298 + 0 NA intron (ENSMUSG00000028527.18, intron 1 of 4) protein_coding-intron (ENSMUSG00000028527.18, intron 2 of 5) -3212 ENSMUSG00000028527.18 ENSMUSG00000028527 ENSMUST00000155749 Ak4 protein_coding Interval_119398 chr4 137460461 137461855 + 0 NA Intergenic Intergenic 7874 ENSMUSG00000041399.3 ENSMUSG00000041399 ENSMUST00000048893 1700013G24Rik protein_coding Interval_121601 chr5 3802192 3803998 + 0 NA promoter-TSS (ENSMUSG00000040351.11) protein_coding-promoter-TSS (ENSMUSG00000040351.11) -94 ENSMUSG00000000600.15 ENSMUSG00000000600 ENSMUST00000200004 Krit1 protein_coding Interval_4501 chr1 74607882 74609751 + 0 NA intron (ENSMUSG00000033276.18, intron 5 of 25) protein_coding-intron (ENSMUSG00000033276.18, intron 5 of 26) 5606 ENSMUSG00000033276.18 ENSMUSG00000033276 ENSMUST00000123154 Stk36 protein_coding Interval_72182 chr17 28463448 28464494 + 0 NA intron (ENSMUSG00000024222.17, intron 1 of 10) protein_coding-intron (ENSMUSG00000024222.17, intron 1 of 10) -2876 ENSMUSG00000117294.1 ENSMUSG00000117294 ENSMUST00000233091 Gm49839 TEC Interval_140762 chr6 121117282 121117643 + 0 NA intron (ENSMUSG00000108096.1, intron 1 of 2) processed_pseudogene-intron (ENSMUSG00000108096.1, intron 1 of 2) 664 ENSMUSG00000108096.1 ENSMUSG00000108096 ENSMUST00000203344 Minpp1-ps processed_pseudogene Interval_87353 chr19 47900138 47900459 + 0 NA intron (ENSMUSG00000117975.1, intron 2 of 2) protein_coding-intron (ENSMUSG00000044948.17, intron 1 of 13) 18952 ENSMUSG00000117975.1 ENSMUSG00000117975 ENSMUST00000237029 Itprip protein_coding Interval_141947 chr6 135732817 135733926 + 0 NA exon (ENSMUSG00000030209.14, exon 14 of 14) protein_coding-exon (ENSMUSG00000030209.14, exon 14 of 14) 501 ENSMUSG00000086239.1 ENSMUSG00000086239 ENSMUST00000136027 Gm14329 lincRNA Interval_9441 chr1 157134612 157135014 + 0 NA TTS (ENSMUSG00000070565.11) protein_coding-TTS (ENSMUSG00000070565.11) 15865 ENSMUSG00000109913.1 ENSMUSG00000109913 ENSMUST00000209278 Gm30694 unitary_pseudogene Interval_26239 chr11 55367603 55368038 + 0 NA Intergenic Intergenic 52505 ENSMUSG00000018593.13 ENSMUSG00000018593 ENSMUST00000125787 Sparc protein_coding Interval_49072 chr13 107721111 107722230 + 0 NA Intergenic Intergenic 34273 ENSMUSG00000102000.6 ENSMUSG00000102000 ENSMUST00000188490 1700006H21Rik lincRNA Interval_123805 chr5 35651285 35654043 + 0 NA TTS (ENSMUSG00000029096.15) protein_coding-TTS (ENSMUSG00000029096.15) 26430 ENSMUSG00000029096.15 ENSMUSG00000029096 ENSMUST00000200810 Htra3 protein_coding Interval_17571 chr10 77846858 77847101 + 0 NA exon (ENSMUSG00000112653.1, exon 1 of 1) protein_coding-exon (ENSMUSG00000112653.1, exon 1 of 1) 176 ENSMUSG00000112653.1 ENSMUSG00000112653 ENSMUST00000218749 Gm36176 protein_coding Interval_131291 chr5 136198346 136199392 + 0 NA promoter-TSS (ENSMUSG00000039737.11) protein_coding-promoter-TSS (ENSMUSG00000039737.11) 94 ENSMUSG00000039737.11 ENSMUSG00000039737 ENSMUST00000149151 Prkrip1 protein_coding Interval_67448 chr16 48773425 48773981 + 0 NA Intergenic Intergenic -1747 ENSMUSG00000030775.11 ENSMUSG00000030775 ENSMUST00000239408 Trat1 protein_coding Interval_37845 chr12 72461344 72462323 + 0 NA intron (ENSMUSG00000021090.16, intron 10 of 32) protein_coding-intron (ENSMUSG00000021090.16, intron 10 of 24) 14134 ENSMUSG00000106138.1 ENSMUSG00000106138 ENSMUST00000196758 Gm44392 miRNA Interval_34651 chr12 8358870 8360115 + 0 NA Intergenic Intergenic -22775 ENSMUSG00000111889.1 ENSMUSG00000111889 ENSMUST00000217669 Gm48071 antisense Interval_42505 chr13 14245238 14246356 + 0 NA exon (ENSMUSG00000021301.9, exon 26 of 29) protein_coding-exon (ENSMUSG00000021301.9, exon 26 of 29) -23859 ENSMUSG00000113563.1 ENSMUSG00000113563 ENSMUST00000221355 Gm2492 processed_pseudogene Interval_15159 chr10 42962350 42963229 + 0 NA Intergenic Intergenic -72204 ENSMUSG00000111171.1 ENSMUSG00000111171 ENSMUST00000213469 Gm47815 antisense Interval_64795 chr16 15855960 15856575 + 0 NA intron (ENSMUSG00000022671.13, intron 1 of 1) protein_coding-intron (ENSMUSG00000022671.13, intron 2 of 2) 7043 ENSMUSG00000022671.13 ENSMUSG00000022671 ENSMUST00000117136 Mzt2 protein_coding Interval_155956 chr8 41265629 41266515 + 0 NA intron (ENSMUSG00000031592.10, intron 6 of 38) protein_coding-intron (ENSMUSG00000031592.10, intron 5 of 37) 26294 ENSMUSG00000031592.10 ENSMUSG00000031592 ENSMUST00000211247 Pcm1 protein_coding Interval_110794 chr4 8461881 8462700 + 0 NA Intergenic Intergenic -5792 ENSMUSG00000082151.3 ENSMUSG00000082151 ENSMUST00000118311 Gm11810 processed_pseudogene Interval_149974 chr7 104033426 104035199 + 0 NA intron (ENSMUSG00000109824.4, intron 3 of 7) protein_coding-intron (ENSMUSG00000109824.4, intron 3 of 7) -1136 ENSMUSG00000073932.2 ENSMUSG00000073932 ENSMUST00000098183 Olfr641 protein_coding Interval_18487 chr10 86636629 86637593 + 0 NA promoter-TSS (ENSMUSG00000112282.1) processed_pseudogene-promoter-TSS (ENSMUSG00000112282.1) -28 ENSMUSG00000112282.1 ENSMUSG00000112282 ENSMUST00000219347 Gm19989 processed_pseudogene Interval_95720 chr2 114895923 114896562 + 0 NA intron (ENSMUSG00000085222.1, intron 3 of 8) lincRNA-intron (ENSMUSG00000085222.1, intron 3 of 8) 42149 ENSMUSG00000085222.1 ENSMUSG00000085222 ENSMUST00000144368 Gm13974 lincRNA Interval_4284 chr1 72383784 72384245 + 0 NA intron (ENSMUSG00000026187.9, intron 19 of 20) protein_coding-intron (ENSMUSG00000026187.9, intron 19 of 20) -75485 ENSMUSG00000085812.1 ENSMUSG00000085812 ENSMUST00000146593 Gm15843 processed_pseudogene Interval_32215 chr11 106216053 106217458 + 0 NA promoter-TSS (ENSMUSG00000078622.8) protein_coding-promoter-TSS (ENSMUSG00000078622.8) -11213 ENSMUSG00000078622.8 ENSMUSG00000078622 ENSMUST00000153982 Ccdc47 protein_coding Interval_11637 chr1 183669034 183670411 + 0 NA Intergenic Intergenic 12409 ENSMUSG00000090533.2 ENSMUSG00000090533 ENSMUST00000172123 Gm8214 processed_pseudogene Interval_48655 chr13 100872316 100872576 + 0 NA promoter-TSS (ENSMUSG00000104450.1) TEC-promoter-TSS (ENSMUSG00000104450.1) -334 ENSMUSG00000104450.1 ENSMUSG00000104450 ENSMUST00000195282 Gm37830 TEC Interval_24696 chr11 35955664 35956261 + 0 NA intron (ENSMUSG00000018849.6, intron 1 of 22) protein_coding-intron (ENSMUSG00000018849.6, intron 1 of 22) -40092 ENSMUSG00000081571.1 ENSMUSG00000081571 ENSMUST00000117261 Gm12125 processed_pseudogene Interval_100096 chr2 167052937 167053889 + 0 NA intron (ENSMUSG00000039501.14, intron 3 of 7) protein_coding-intron (ENSMUSG00000039501.14, intron 3 of 13) 7012 ENSMUSG00000039501.14 ENSMUSG00000039501 ENSMUST00000135967 Znfx1 protein_coding Interval_88593 chr2 6444389 6445326 + 0 NA exon (ENSMUSG00000039046.15, exon 15 of 15) protein_coding-exon (ENSMUSG00000039046.15, exon 15 of 15) -8824 ENSMUSG00000085716.1 ENSMUSG00000085716 ENSMUST00000126659 Gm13388 antisense Interval_132471 chr5 145154173 145154532 + 0 NA intron (ENSMUSG00000029624.10, intron 6 of 8) protein_coding-intron (ENSMUSG00000029624.10, intron 6 of 8) 12604 ENSMUSG00000029624.10 ENSMUSG00000029624 ENSMUST00000161390 Ptcd1 protein_coding Interval_54534 chr14 70534311 70534544 + 0 NA TTS (ENSMUSG00000033595.7) protein_coding-TTS (ENSMUSG00000033595.7) 3557 ENSMUSG00000033595.7 ENSMUSG00000033595 ENSMUST00000226548 Lgi3 protein_coding Interval_98705 chr2 154426056 154428748 + 0 NA Intergenic Intergenic -9440 ENSMUSG00000038533.15 ENSMUSG00000038533 ENSMUST00000139506 Cbfa2t2 protein_coding Interval_89137 chr2 17169014 17170192 + 0 NA exon (ENSMUSG00000081525.1, exon 1 of 1) processed_pseudogene-exon (ENSMUSG00000081525.1, exon 1 of 1) 378 ENSMUSG00000081525.1 ENSMUSG00000081525 ENSMUST00000118746 Gm13325 processed_pseudogene Interval_87310 chr19 47548795 47548998 + 0 NA Intergenic Intergenic -11872 ENSMUSG00000042694.17 ENSMUSG00000042694 ENSMUST00000183283 Stn1 protein_coding Interval_148003 chr7 77654870 77655634 + 0 NA Intergenic Intergenic 242679 ENSMUSG00000108324.1 ENSMUSG00000108324 ENSMUST00000206827 Gm44608 TEC Interval_55405 chr14 86781783 86782583 + 0 NA intron (ENSMUSG00000022021.14, intron 25 of 26) protein_coding-intron (ENSMUSG00000022021.14, intron 25 of 27) -74998 ENSMUSG00000115306.1 ENSMUSG00000115306 ENSMUST00000226731 Gm49159 TEC Interval_94553 chr2 92170785 92172108 + 0 NA intron (ENSMUSG00000058318.15, intron 1 of 16) protein_coding-intron (ENSMUSG00000058318.15, intron 1 of 15) -12856 ENSMUSG00000058318.15 ENSMUSG00000058318 ENSMUST00000161044 Phf21a protein_coding Interval_31718 chr11 102429868 102431416 + 0 NA exon (ENSMUSG00000034708.12, exon 1 of 7) protein_coding-exon (ENSMUSG00000034708.12, exon 1 of 7) 327 ENSMUSG00000034708.12 ENSMUSG00000034708 ENSMUST00000177428 Grn protein_coding Interval_35040 chr12 16822248 16822467 + 0 NA TTS (ENSMUSG00000057469.8) protein_coding-TTS (ENSMUSG00000057469.8) 2096 ENSMUSG00000057469.8 ENSMUSG00000057469 ENSMUST00000221600 E2f6 protein_coding Interval_69727 chr16 95870018 95870803 + 0 NA intron (ENSMUSG00000117232.1, intron 1 of 3) lincRNA-intron (ENSMUSG00000117232.1, intron 2 of 3) -24640 ENSMUSG00000117232.1 ENSMUSG00000117232 ENSMUST00000233375 1600002D24Rik lincRNA Interval_132997 chr5 149170856 149171629 + 0 NA intron (ENSMUSG00000097191.2, intron 2 of 3) lincRNA-intron (ENSMUSG00000097191.2, intron 2 of 3) -11941 ENSMUSG00000107313.1 ENSMUSG00000107313 ENSMUST00000202511 Gm43332 lincRNA Interval_137311 chr6 71238180 71239372 + 0 NA intron (ENSMUSG00000055027.17, intron 2 of 9) protein_coding-intron (ENSMUSG00000055027.17, intron 2 of 9) -21902 ENSMUSG00000055027.17 ENSMUSG00000055027 ENSMUST00000173297 Smyd1 protein_coding Interval_123029 chr5 28700437 28700692 + 0 NA intron (ENSMUSG00000097726.7, intron 4 of 6) antisense-intron (ENSMUSG00000097726.7, intron 2 of 6) 123291 ENSMUSG00000104587.1 ENSMUSG00000104587 ENSMUST00000197020 Gm43161 TEC Interval_37207 chr12 59691676 59692281 + 0 NA Intergenic Intergenic 18988 ENSMUSG00000077603.1 ENSMUSG00000077603 ENSMUST00000104415 Gm22673 snoRNA Interval_16388 chr10 62682912 62683538 + 0 NA TTS (ENSMUSG00000105329.1) miRNA-TTS (ENSMUSG00000105329.1) 717 ENSMUSG00000105329.1 ENSMUSG00000105329 ENSMUST00000200383 Mir7215 miRNA Interval_139911 chr6 112652331 112652839 + 0 NA intron (ENSMUSG00000030254.16, intron 8 of 9) protein_coding-intron (ENSMUSG00000030254.16, intron 10 of 13) 44048 ENSMUSG00000030254.16 ENSMUSG00000030254 ENSMUST00000135092 Rad18 protein_coding Interval_163965 chr9 29922522 29923264 + 0 NA intron (ENSMUSG00000059974.10, intron 1 of 2) protein_coding-intron (ENSMUSG00000059974.10, intron 1 of 7) 140826 ENSMUSG00000111175.1 ENSMUSG00000111175 ENSMUST00000214849 Gm19640 processed_pseudogene Interval_25157 chr11 44613030 44613751 + 0 NA intron (ENSMUSG00000102563.1, intron 1 of 1) TEC-intron (ENSMUSG00000102563.1, intron 1 of 1) 3626 ENSMUSG00000102563.1 ENSMUSG00000102563 ENSMUST00000191765 Gm37695 TEC Interval_107382 chr3 107100805 107102880 + 0 NA promoter-TSS (ENSMUSG00000040724.5) protein_coding-promoter-TSS (ENSMUSG00000040724.5) 696 ENSMUSG00000040724.5 ENSMUSG00000040724 ENSMUST00000196403 Kcna2 protein_coding Interval_102244 chr3 19894294 19895581 + 0 NA promoter-TSS (ENSMUSG00000048106.6) transcribed_unprocessed_pseudogene-promoter-TSS (ENSMUSG00000048106.6) 51 ENSMUSG00000048106.6 ENSMUSG00000048106 ENSMUST00000059704 4632415L05Rik transcribed_unprocessed_pseudogene Interval_6718 chr1 118958290 118958485 + 0 NA intron (ENSMUSG00000048402.14, intron 2 of 6) protein_coding-intron (ENSMUSG00000048402.14, intron 2 of 13) 4167 ENSMUSG00000098273.1 ENSMUSG00000098273 ENSMUST00000183982 Mir6346 miRNA Interval_98571 chr2 153318946 153319894 + 0 NA intron (ENSMUSG00000027475.9, intron 2 of 8) protein_coding-intron (ENSMUSG00000027475.9, intron 2 of 8) -26409 ENSMUSG00000042548.14 ENSMUSG00000042548 ENSMUST00000138571 Asxl1 protein_coding Interval_2348 chr1 38281853 38282405 + 0 NA intron (ENSMUSG00000037138.18, intron 9 of 22) protein_coding-intron (ENSMUSG00000037138.18, intron 9 of 22) -25773 ENSMUSG00000085280.1 ENSMUSG00000085280 ENSMUST00000129696 Gm16151 antisense Interval_139930 chr6 112852465 112854122 + 0 NA intron (ENSMUSG00000030257.16, intron 1 of 21) protein_coding-intron (ENSMUSG00000030257.16, intron 1 of 9) -23834 ENSMUSG00000030257.16 ENSMUSG00000030257 ENSMUST00000143475 Srgap3 protein_coding Interval_148230 chr7 79993854 79995076 + 0 NA Intergenic Intergenic -33349 ENSMUSG00000048897.15 ENSMUSG00000048897 ENSMUST00000206104 Zfp710 protein_coding Interval_5256 chr1 87003251 87003511 + 0 NA intron (ENSMUSG00000053333.15, intron 14 of 20) protein_coding-intron (ENSMUSG00000053333.15, intron 13 of 20) 15111 ENSMUSG00000102956.1 ENSMUSG00000102956 ENSMUST00000195266 Gm37017 TEC Interval_59560 chr15 55279414 55280992 + 0 NA Intergenic Intergenic -17600 ENSMUSG00000095792.1 ENSMUSG00000095792 ENSMUST00000179457 Gm26296 snRNA Interval_114812 chr4 85536698 85536988 + 0 NA intron (ENSMUSG00000066113.16, intron 1 of 3) protein_coding-intron (ENSMUSG00000028488.15, intron 7 of 7) 22671 ENSMUSG00000066113.16 ENSMUSG00000066113 ENSMUST00000107177 Adamtsl1 protein_coding Interval_8611 chr1 143820061 143820757 + 0 NA Intergenic Intergenic 25734 ENSMUSG00000018189.12 ENSMUSG00000018189 ENSMUST00000185539 Uchl5 protein_coding Interval_80890 chr18 49948811 49949690 + 0 NA promoter-TSS (ENSMUSG00000037416.13) protein_coding-promoter-TSS (ENSMUSG00000037416.13) 26537 ENSMUSG00000037416.13 ENSMUSG00000037416 ENSMUST00000181042 Dmxl1 protein_coding Interval_124380 chr5 45278128 45278892 + 0 NA intron (ENSMUSG00000029092.9, intron 4 of 5) lincRNA-intron (ENSMUSG00000029092.9, intron 4 of 5) -26581 ENSMUSG00000104781.1 ENSMUSG00000104781 ENSMUST00000200133 Gm43303 lincRNA Interval_126825 chr5 93191131 93191371 + 0 NA intron (ENSMUSG00000063015.12, intron 2 of 5) protein_coding-intron (ENSMUSG00000063015.12, intron 2 of 6) -1586 ENSMUSG00000063015.12 ENSMUSG00000063015 ENSMUST00000144514 Ccni protein_coding Interval_30772 chr11 96388625 96389072 + 0 NA Intergenic Intergenic -3264 ENSMUSG00000075587.5 ENSMUSG00000075587 ENSMUST00000117614 Gm11531 processed_pseudogene Interval_63011 chr15 98637266 98637490 + 0 NA intron (ENSMUSG00000003352.14, intron 1 of 12) protein_coding-intron (ENSMUSG00000003352.14, intron 1 of 11) 5573 ENSMUSG00000003352.14 ENSMUSG00000003352 ENSMUST00000230064 Cacnb3 protein_coding Interval_132713 chr5 147331175 147333277 + 0 NA intron (ENSMUSG00000042817.15, intron 23 of 23) protein_coding-intron (ENSMUSG00000042817.15, intron 23 of 23) -5892 ENSMUSG00000106939.1 ENSMUSG00000106939 ENSMUST00000201667 Gm29778 processed_pseudogene Interval_173223 chrX 74372882 74373917 + 0 NA promoter-TSS (ENSMUSG00000032806.13) protein_coding-promoter-TSS (ENSMUSG00000032806.13) -181 ENSMUSG00000015290.15 ENSMUSG00000015290 ENSMUST00000125914 Ubl4a protein_coding Interval_72907 chr17 33232270 33232443 + 0 NA Intergenic Intergenic -10684 ENSMUSG00000096169.3 ENSMUSG00000096169 ENSMUST00000112162 Olfr1564 protein_coding Interval_38407 chr12 78777862 78778306 + 0 NA intron (ENSMUSG00000021112.9, intron 1 of 14) protein_coding-intron (ENSMUSG00000021112.9, intron 1 of 14) -25296 ENSMUSG00000088822.1 ENSMUSG00000088822 ENSMUST00000158197 Gm25225 snRNA Interval_124154 chr5 38702368 38702564 + 0 NA Intergenic Intergenic -2654 ENSMUSG00000077273.1 ENSMUSG00000077273 ENSMUST00000104085 Gm22779 snRNA Interval_99734 chr2 164558729 164559446 + 0 NA exon (ENSMUSG00000086179.1, exon 3 of 3) lincRNA-exon (ENSMUSG00000086179.1, exon 3 of 3) -3326 ENSMUSG00000017723.11 ENSMUSG00000017723 ENSMUST00000125051 Wfdc2 protein_coding Interval_48372 chr13 98587395 98587778 + 0 NA Intergenic Intergenic -25915 ENSMUSG00000114733.1 ENSMUSG00000114733 ENSMUST00000223936 Gm4815 processed_pseudogene Interval_85197 chr19 23676191 23676437 + 0 NA exon (ENSMUSG00000051255.6, exon 1 of 1) processed_pseudogene-exon (ENSMUSG00000051255.6, exon 1 of 1) 466 ENSMUSG00000051255.6 ENSMUSG00000051255 ENSMUST00000056396 Gm6563 processed_pseudogene Interval_107779 chr3 114030023 114030943 + 0 NA promoter-TSS (ENSMUSG00000027966.20) protein_coding-promoter-TSS (ENSMUSG00000027966.20) -98906 ENSMUSG00000027966.20 ENSMUSG00000027966 ENSMUST00000184978 Col11a1 protein_coding Interval_116381 chr4 110864709 110864910 + 0 NA intron (ENSMUSG00000061298.14, intron 3 of 12) protein_coding-intron (ENSMUSG00000061298.14, intron 3 of 12) -351077 ENSMUSG00000082348.1 ENSMUSG00000082348 ENSMUST00000121546 Gm12807 processed_pseudogene Interval_105910 chr3 90018015 90018230 + 0 NA promoter-TSS (ENSMUSG00000042520.16) protein_coding-promoter-TSS (ENSMUSG00000042520.16) -6912 ENSMUSG00000098397.1 ENSMUSG00000098397 ENSMUST00000183442 Mir7669 miRNA Interval_154979 chr8 25462296 25463265 + 0 NA TTS (ENSMUSG00000110063.1) lincRNA-TTS (ENSMUSG00000110063.1) 8507 ENSMUSG00000074412.4 ENSMUSG00000074412 ENSMUST00000098864 Gm10689 processed_pseudogene Interval_102778 chr3 30968348 30969885 + 0 NA intron (ENSMUSG00000037652.15, intron 1 of 13) protein_coding-intron (ENSMUSG00000037652.15, intron 1 of 16) 283 ENSMUSG00000037652.15 ENSMUSG00000037652 ENSMUST00000150939 Phc3 protein_coding Interval_108386 chr3 126496907 126497349 + 0 NA Intergenic Intergenic 49385 ENSMUSG00000105233.1 ENSMUSG00000105233 ENSMUST00000197129 Gm20568 processed_pseudogene Interval_95100 chr2 103891436 103891643 + 0 NA Intergenic Intergenic 3215 ENSMUSG00000083643.1 ENSMUSG00000083643 ENSMUST00000118451 Gm13876 processed_pseudogene Interval_45908 chr13 59073166 59074230 + 0 NA intron (ENSMUSG00000055254.15, intron 16 of 17) protein_coding-intron (ENSMUSG00000055254.15, intron 16 of 17) 4598 ENSMUSG00000114896.1 ENSMUSG00000114896 ENSMUST00000224384 Gm34245 TEC Interval_169401 chr9 96979732 96979920 + 0 NA intron (ENSMUSG00000046997.5, intron 2 of 2) protein_coding-intron (ENSMUSG00000046997.5, intron 2 of 2) 4369 ENSMUSG00000046997.5 ENSMUSG00000046997 ENSMUST00000064445 Spsb4 protein_coding Interval_89903 chr2 26356816 26358178 + 0 NA exon (ENSMUSG00000026928.14, exon 5 of 13) protein_coding-exon (ENSMUSG00000026928.14, exon 5 of 13) -4722 ENSMUSG00000026928.14 ENSMUSG00000026928 ENSMUST00000028294 Card9 protein_coding Interval_40936 chr12 110020391 110021392 + 0 NA intron (ENSMUSG00000113063.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000113063.1, intron 1 of 2) 2982 ENSMUSG00000113063.1 ENSMUSG00000113063 ENSMUST00000222974 Gm34667 lincRNA Interval_15777 chr10 56400630 56402307 + 0 NA exon (ENSMUSG00000050953.10, exon 3 of 3) protein_coding-exon (ENSMUSG00000050953.10, exon 3 of 3) 24019 ENSMUSG00000050953.10 ENSMUSG00000050953 ENSMUST00000220069 Gja1 protein_coding Interval_59028 chr15 41843528 41844119 + 0 NA intron (ENSMUSG00000022307.16, intron 2 of 3) protein_coding-intron (ENSMUSG00000022307.16, intron 9 of 14) 12830 ENSMUSG00000022307.16 ENSMUSG00000022307 ENSMUST00000230126 Oxr1 protein_coding Interval_464 chr1 5915397 5917999 + 0 NA exon (ENSMUSG00000033774.4, exon 1 of 1) protein_coding-exon (ENSMUSG00000033774.4, exon 1 of 1) 700 ENSMUSG00000033774.4 ENSMUSG00000033774 ENSMUST00000044180 Npbwr1 protein_coding Interval_10334 chr1 169517717 169518155 + 0 NA intron (ENSMUSG00000026683.14, intron 1 of 5) protein_coding-intron (ENSMUSG00000026683.14, intron 6 of 14) 4446 ENSMUSG00000026683.14 ENSMUSG00000026683 ENSMUST00000194831 Nuf2 protein_coding Interval_145141 chr7 30265081 30267517 + 0 NA intron (ENSMUSG00000037020.16, intron 8 of 32) protein_coding-intron (ENSMUSG00000037020.16, intron 8 of 32) 3036 ENSMUSG00000081565.1 ENSMUSG00000081565 ENSMUST00000118272 Rps12-ps5 processed_pseudogene Interval_86838 chr19 44273659 44274509 + 0 NA intron (ENSMUSG00000117958.1, intron 3 of 3) transcribed_processed_pseudogene-intron (ENSMUSG00000117958.1, intron 1 of 1) 1813 ENSMUSG00000117958.1 ENSMUSG00000117958 ENSMUST00000235961 Gm35183 transcribed_processed_pseudogene Interval_125163 chr5 65019211 65020389 + 0 NA intron (ENSMUSG00000029185.14, intron 7 of 13) protein_coding-intron (ENSMUSG00000029185.14, intron 7 of 13) 47150 ENSMUSG00000106186.1 ENSMUSG00000106186 ENSMUST00000197119 Gm43627 TEC Interval_132306 chr5 144064034 144064670 + 0 NA Intergenic Intergenic 4838 ENSMUSG00000105150.1 ENSMUSG00000105150 ENSMUST00000197465 Gm43615 processed_pseudogene Interval_161504 chr8 120796200 120796723 + 0 NA intron (ENSMUSG00000092329.1, intron 1 of 15) protein_coding-intron (ENSMUSG00000092329.1, intron 1 of 15) 60102 ENSMUSG00000041515.10 ENSMUSG00000041515 ENSMUST00000160594 Irf8 protein_coding Interval_63859 chr16 4045741 4046079 + 0 NA exon (ENSMUSG00000005981.11, exon 13 of 18) protein_coding-exon (ENSMUSG00000005981.11, exon 13 of 18) -8391 ENSMUSG00000084790.1 ENSMUSG00000084790 ENSMUST00000139334 Gm15879 antisense Interval_35651 chr12 26610086 26610340 + 0 NA intron (ENSMUSG00000113524.1, intron 2 of 2) lincRNA-intron (ENSMUSG00000113524.1, intron 2 of 2) -7904 ENSMUSG00000113628.1 ENSMUSG00000113628 ENSMUST00000221140 1700020D12Rik lincRNA Interval_139250 chr6 97559800 97560153 + 0 NA intron (ENSMUSG00000030064.16, intron 1 of 7) protein_coding-intron (ENSMUSG00000030064.16, intron 1 of 23) 12262 ENSMUSG00000065017.1 ENSMUSG00000065017 ENSMUST00000083083 Gm23510 snRNA Interval_19510 chr10 100958362 100958578 + 0 NA Intergenic Intergenic -216835 ENSMUSG00000112104.1 ENSMUSG00000112104 ENSMUST00000218270 Gm35722 lincRNA Interval_164876 chr9 42742096 42742674 + 0 NA intron (ENSMUSG00000032017.14, intron 3 of 20) protein_coding-intron (ENSMUSG00000032017.14, intron 1 of 18) 119744 ENSMUSG00000076355.2 ENSMUSG00000076355 ENSMUST00000102400 Gm27509 miRNA Interval_106961 chr3 102200139 102200475 + 0 NA intron (ENSMUSG00000027860.15, intron 1 of 7) protein_coding-intron (ENSMUSG00000027860.15, intron 1 of 7) -3649 ENSMUSG00000089916.1 ENSMUSG00000089916 ENSMUST00000160105 Gm16160 antisense Interval_153822 chr8 9140847 9141709 + 0 NA Intergenic Intergenic -3391 ENSMUSG00000109215.1 ENSMUSG00000109215 ENSMUST00000209053 4930453L07Rik lincRNA Interval_50563 chr14 15537581 15537859 + 0 NA Intergenic Intergenic 64303 ENSMUSG00000114941.1 ENSMUSG00000114941 ENSMUST00000223575 Gm47779 processed_pseudogene Interval_86529 chr19 41475965 41477828 + 0 NA Intergenic Intergenic 17083 ENSMUSG00000044065.3 ENSMUSG00000044065 ENSMUST00000057038 Gm9788 processed_pseudogene Interval_113003 chr4 46731598 46732214 + 0 NA intron (ENSMUSG00000039809.10, intron 11 of 18) protein_coding-intron (ENSMUSG00000039809.10, intron 11 of 18) -81697 ENSMUSG00000039813.14 ENSMUSG00000039813 ENSMUST00000107750 Tbc1d2 protein_coding Interval_62461 chr15 93185351 93185772 + 0 NA Intergenic Intergenic -11034 ENSMUSG00000097989.1 ENSMUSG00000097989 ENSMUST00000182581 Gm4335 processed_pseudogene Interval_172195 chrX 8864227 8864578 + 0 NA Intergenic Intergenic -9851 ENSMUSG00000079697.1 ENSMUSG00000079697 ENSMUST00000115561 Gm5751 protein_coding Interval_168450 chr9 80688612 80688902 + 0 NA Intergenic Intergenic -21238 ENSMUSG00000111717.1 ENSMUSG00000111717 ENSMUST00000214710 Gm39380 lincRNA Interval_48184 chr13 97057379 97057614 + 0 NA Intergenic Intergenic -9790 ENSMUSG00000041817.14 ENSMUSG00000041817 ENSMUST00000042517 Fam169a protein_coding Interval_129153 chr5 117884960 117885653 + 0 NA intron (ENSMUSG00000029361.18, intron 2 of 27) protein_coding-intron (ENSMUSG00000029361.18, intron 3 of 28) 12493 ENSMUSG00000104071.1 ENSMUSG00000104071 ENSMUST00000194276 Gm37028 TEC Interval_39024 chr12 84539436 84540311 + 0 NA intron (ENSMUSG00000085793.2, intron 4 of 4) protein_coding-intron (ENSMUSG00000085793.2, intron 4 of 4) 9829 ENSMUSG00000085793.2 ENSMUSG00000085793 ENSMUST00000222741 Lin52 protein_coding Interval_7491 chr1 131813972 131814648 + 0 NA intron (ENSMUSG00000042251.12, intron 2 of 3) protein_coding-intron (ENSMUSG00000042251.12, intron 12 of 13) 2180 ENSMUSG00000042251.12 ENSMUSG00000042251 ENSMUST00000132450 Pm20d1 protein_coding Interval_67772 chr16 57083577 57084434 + 0 NA Intergenic Intergenic -12653 ENSMUSG00000046748.8 ENSMUSG00000046748 ENSMUST00000227043 Tmem45a2 protein_coding Interval_103316 chr3 38546553 38547423 + 0 NA Intergenic Intergenic 11226 ENSMUSG00000076385.1 ENSMUSG00000076385 ENSMUST00000102430 Gm24462 miRNA Interval_127775 chr5 107703547 107704105 + 0 NA promoter-TSS (ENSMUSG00000106333.1) lincRNA-promoter-TSS (ENSMUSG00000106333.1) -346 ENSMUSG00000106333.1 ENSMUSG00000106333 ENSMUST00000198537 4930428O21Rik lincRNA Interval_59310 chr15 51111659 51112297 + 0 NA Intergenic Intergenic 214339 ENSMUSG00000115339.1 ENSMUSG00000115339 ENSMUST00000226611 Gm48913 lincRNA Interval_100771 chr2 172458597 172459501 + 0 NA promoter-TSS (ENSMUSG00000074569.4) protein_coding-promoter-TSS (ENSMUSG00000074569.4) -4307 ENSMUSG00000074569.4 ENSMUSG00000074569 ENSMUST00000161334 Gcnt7 protein_coding Interval_80498 chr18 42821339 42822307 + 0 NA intron (ENSMUSG00000024500.20, intron 1 of 1) protein_coding-intron (ENSMUSG00000024500.20, intron 1 of 8) -113647 ENSMUSG00000084959.1 ENSMUSG00000084959 ENSMUST00000151215 4933407I08Rik antisense Interval_136039 chr6 50225452 50225757 + 0 NA intron (ENSMUSG00000029821.15, intron 5 of 9) protein_coding-intron (ENSMUSG00000029821.15, intron 6 of 10) 36371 ENSMUSG00000029821.15 ENSMUSG00000029821 ENSMUST00000204700 Gsdme protein_coding Interval_13573 chr10 19876688 19878018 + 0 NA intron (ENSMUSG00000020003.16, intron 7 of 8) protein_coding-intron (ENSMUSG00000020003.16, intron 8 of 9) -2906 ENSMUSG00000111067.1 ENSMUSG00000111067 ENSMUST00000216902 Gm48714 TEC Interval_93725 chr2 76239650 76240040 + 0 NA intron (ENSMUSG00000075270.11, intron 2 of 19) protein_coding-intron (ENSMUSG00000075270.11, intron 2 of 19) -24451 ENSMUSG00000075270.11 ENSMUSG00000075270 ENSMUST00000144892 Pde11a protein_coding Interval_148204 chr7 79798964 79800066 + 0 NA Intergenic Intergenic -5727 ENSMUSG00000030544.5 ENSMUSG00000030544 ENSMUST00000032760 Mesp1 protein_coding Interval_20977 chr10 122963613 122963871 + 0 NA Intergenic Intergenic 21982 ENSMUSG00000065406.3 ENSMUSG00000065406 ENSMUST00000083472 Mirlet7i miRNA Interval_140523 chr6 119225805 119226019 + 0 NA Intergenic Intergenic -10614 ENSMUSG00000041460.16 ENSMUSG00000041460 ENSMUST00000185965 Cacna2d4 protein_coding Interval_43265 chr13 28294760 28295319 + 0 NA intron (ENSMUSG00000113418.1, intron 1 of 2) unprocessed_pseudogene-intron (ENSMUSG00000113418.1, intron 1 of 2) 9470 ENSMUSG00000113418.1 ENSMUSG00000113418 ENSMUST00000222053 Gm47172 unprocessed_pseudogene Interval_51207 chr14 24997761 24998768 + 0 NA Intergenic Intergenic -32833 ENSMUSG00000114416.1 ENSMUSG00000114416 ENSMUST00000224831 Gm47907 TEC Interval_100824 chr2 172733140 172733942 + 0 NA Intergenic Intergenic 130800 ENSMUSG00000093160.1 ENSMUSG00000093160 ENSMUST00000175419 Gm22773 miRNA Interval_41723 chr12 118320615 118320898 + 0 NA Intergenic Intergenic -19388 ENSMUSG00000025323.10 ENSMUSG00000025323 ENSMUST00000221844 Sp4 protein_coding Interval_39412 chr12 87256484 87256865 + 0 NA intron (ENSMUSG00000021038.17, intron 5 of 11) protein_coding-intron (ENSMUSG00000021038.17, intron 5 of 18) 9579 ENSMUSG00000021038.17 ENSMUSG00000021038 ENSMUST00000222350 Vipas39 protein_coding Interval_173204 chrX 74103588 74103785 + 0 NA intron (ENSMUSG00000031393.16, intron 1 of 3) protein_coding-intron (ENSMUSG00000031393.16, intron 1 of 3) -18089 ENSMUSG00000031393.16 ENSMUSG00000031393 ENSMUST00000198358 Mecp2 protein_coding Interval_74388 chr17 49852704 49853322 + 0 NA intron (ENSMUSG00000023999.14, intron 15 of 22) protein_coding-intron (ENSMUSG00000023999.14, intron 15 of 22) -31188 ENSMUSG00000090012.1 ENSMUSG00000090012 ENSMUST00000159971 Gm16555 antisense Interval_21102 chr10 126371831 126372673 + 0 NA intron (ENSMUSG00000112482.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000112482.1, intron 1 of 1) 277 ENSMUSG00000112482.1 ENSMUSG00000112482 ENSMUST00000218075 1700025K04Rik lincRNA Interval_47799 chr13 93047891 93048142 + 0 NA intron (ENSMUSG00000047419.5, intron 11 of 12) protein_coding-intron (ENSMUSG00000047419.5, intron 11 of 12) -25363 ENSMUSG00000114382.1 ENSMUSG00000114382 ENSMUST00000225665 Gm4814 antisense Interval_67301 chr16 45742400 45743392 + 0 NA promoter-TSS (ENSMUSG00000033157.17) protein_coding-promoter-TSS (ENSMUSG00000033157.17) 4 ENSMUSG00000033157.17 ENSMUSG00000033157 ENSMUST00000155741 Abhd10 protein_coding Interval_30844 chr11 96836157 96837791 + 0 NA Intergenic Intergenic -12847 ENSMUSG00000038615.17 ENSMUSG00000038615 ENSMUST00000135836 Nfe2l1 protein_coding Interval_14882 chr10 40809060 40810007 + 0 NA intron (ENSMUSG00000045555.3, intron 4 of 4) protein_coding-intron (ENSMUSG00000045555.3, intron 4 of 4) 36404 ENSMUSG00000038446.8 ENSMUSG00000038446 ENSMUST00000215441 Cdc40 protein_coding Interval_79067 chr18 24288683 24290515 + 0 NA Intergenic Intergenic 32221 ENSMUSG00000091363.1 ENSMUSG00000091363 ENSMUST00000163185 Gm7701 processed_pseudogene Interval_27005 chr11 62326214 62327063 + 0 NA TTS (ENSMUSG00000018501.17) protein_coding-TTS (ENSMUSG00000018501.17) -4783 ENSMUSG00000081944.1 ENSMUSG00000081944 ENSMUST00000121709 Gm12276 processed_pseudogene Interval_62611 chr15 95584390 95586027 + 0 NA Intergenic Intergenic 21457 ENSMUSG00000089560.1 ENSMUSG00000089560 ENSMUST00000158935 Gm24668 snRNA Interval_116494 chr4 114676936 114677863 + 0 NA Intergenic Intergenic -3405 ENSMUSG00000085870.1 ENSMUSG00000085870 ENSMUST00000146346 Gm12829 lincRNA Interval_4261 chr1 72225542 72227179 + 0 NA TTS (ENSMUSG00000094655.1) snRNA-TTS (ENSMUSG00000094655.1) 120 ENSMUSG00000094655.1 ENSMUSG00000094655 ENSMUST00000178786 Gm25360 snRNA Interval_173480 chrX 94989900 94991111 + 0 NA Intergenic Intergenic 8178 ENSMUSG00000087522.3 ENSMUSG00000087522 ENSMUST00000142240 Gm371 processed_pseudogene Interval_13213 chr10 13117163 13117554 + 0 NA TTS (ENSMUSG00000019817.18) protein_coding-TTS (ENSMUSG00000019817.18) -25541 ENSMUSG00000098635.1 ENSMUSG00000098635 ENSMUST00000185060 Gm27741 misc_RNA Interval_160275 chr8 107628820 107629812 + 0 NA Intergenic Intergenic -40858 ENSMUSG00000039067.5 ENSMUSG00000039067 ENSMUST00000213080 Psmd7 protein_coding Interval_7025 chr1 122580412 122580619 + 0 NA Intergenic Intergenic 27342 ENSMUSG00000089190.1 ENSMUSG00000089190 ENSMUST00000158565 Gm25771 snoRNA Interval_62227 chr15 88978515 88978757 + 0 NA exon (ENSMUSG00000035805.13, exon 1 of 12) protein_coding-exon (ENSMUSG00000035805.13, exon 1 of 12) 371 ENSMUSG00000035805.13 ENSMUSG00000035805 ENSMUST00000109368 Mlc1 protein_coding Interval_158522 chr8 84222737 84223979 + 0 NA intron (ENSMUSG00000035671.6, intron 9 of 13) protein_coding-intron (ENSMUSG00000035671.6, intron 9 of 13) 13697 ENSMUSG00000035671.6 ENSMUSG00000035671 ENSMUST00000039480 Zswim4 protein_coding Interval_9687 chr1 161034267 161035551 + 0 NA promoter-TSS (ENSMUSG00000053332.13) processed_transcript-promoter-TSS (ENSMUSG00000053332.13) -93 ENSMUSG00000043467.19 ENSMUSG00000043467 ENSMUST00000177003 Zbtb37 protein_coding Interval_74737 chr17 56241380 56242496 + 0 NA intron (ENSMUSG00000117172.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000117172.1, intron 1 of 1) 222 ENSMUSG00000117172.1 ENSMUSG00000117172 ENSMUST00000233314 A230051N06Rik lincRNA Interval_100380 chr2 168719498 168720284 + 0 NA intron (ENSMUSG00000027546.15, intron 1 of 4) protein_coding-intron (ENSMUSG00000027546.15, intron 1 of 27) 22073 ENSMUSG00000027546.15 ENSMUSG00000027546 ENSMUST00000156555 Atp9a protein_coding Interval_26431 chr11 57819927 57820572 + 0 NA Intergenic Intergenic 12569 ENSMUSG00000037335.13 ENSMUSG00000037335 ENSMUST00000108845 Hand1 protein_coding Interval_44671 chr13 47042734 47044346 + 0 NA promoter-TSS (ENSMUSG00000021376.11) protein_coding-promoter-TSS (ENSMUSG00000021376.11) -30 ENSMUSG00000038080.17 ENSMUSG00000038080 ENSMUST00000128977 Kdm1b protein_coding Interval_64201 chr16 9092008 9092539 + 0 NA intron (ENSMUSG00000116469.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000116469.1, intron 1 of 2) 12128 ENSMUSG00000116469.1 ENSMUSG00000116469 ENSMUST00000229166 Gm49448 lincRNA Interval_91993 chr2 52366505 52367399 + 0 NA promoter-TSS (ENSMUSG00000086447.2) antisense-promoter-TSS (ENSMUSG00000086447.2) -4457 ENSMUSG00000081158.1 ENSMUSG00000081158 ENSMUST00000118922 Gm13521 processed_pseudogene Interval_10530 chr1 171515043 171515490 + 0 NA promoter-TSS (ENSMUSG00000038218.3) unprocessed_pseudogene-promoter-TSS (ENSMUSG00000038218.3) 33 ENSMUSG00000038218.3 ENSMUSG00000038218 ENSMUST00000043170 Gm9765 unprocessed_pseudogene Interval_23274 chr11 21097762 21097993 + 0 NA intron (ENSMUSG00000020134.13, intron 1 of 6) protein_coding-intron (ENSMUSG00000020134.13, intron 1 of 6) -1657 ENSMUSG00000084362.1 ENSMUSG00000084362 ENSMUST00000121233 2610024D14Rik processed_pseudogene Interval_99669 chr2 164073942 164074635 + 0 NA intron (ENSMUSG00000018209.15, intron 1 of 10) protein_coding-intron (ENSMUSG00000018209.15, intron 1 of 10) -7309 ENSMUSG00000018209.15 ENSMUSG00000018209 ENSMUST00000088291 Stk4 protein_coding Interval_28200 chr11 74250783 74250979 + 0 NA Intergenic Intergenic -8927 ENSMUSG00000070375.7 ENSMUSG00000070375 ENSMUST00000133561 Olfr406 protein_coding Interval_110060 chr3 152853819 152854076 + 0 NA intron (ENSMUSG00000039037.5, intron 2 of 4) protein_coding-intron (ENSMUSG00000039037.5, intron 2 of 4) 22270 ENSMUSG00000090040.1 ENSMUSG00000090040 ENSMUST00000162856 Gm16232 processed_pseudogene Interval_22248 chr11 8090582 8090927 + 0 NA Intergenic Intergenic 23340 ENSMUSG00000082459.1 ENSMUSG00000082459 ENSMUST00000122321 Gm11988 processed_pseudogene Interval_62539 chr15 94495857 94497382 + 0 NA Intergenic Intergenic 46874 ENSMUSG00000033356.3 ENSMUSG00000033356 ENSMUST00000134061 Pus7l protein_coding Interval_16393 chr10 62704643 62704887 + 0 NA intron (ENSMUSG00000036923.12, intron 1 of 3) protein_coding-intron (ENSMUSG00000036923.12, intron 2 of 3) 2569 ENSMUSG00000112378.1 ENSMUSG00000112378 ENSMUST00000220207 Gm47261 processed_pseudogene Interval_111910 chr4 32481379 32483204 + 0 NA intron (ENSMUSG00000040270.16, intron 1 of 4) protein_coding-intron (ENSMUSG00000040270.16, intron 3 of 7) -32496 ENSMUSG00000084611.1 ENSMUSG00000084611 ENSMUST00000122662 Gm24371 misc_RNA Interval_169061 chr9 91370118 91370341 + 0 NA promoter-TSS (ENSMUSG00000036972.14) protein_coding-promoter-TSS (ENSMUSG00000036972.14) -1121 ENSMUSG00000036972.14 ENSMUSG00000036972 ENSMUST00000085242 Zic4 protein_coding Interval_167379 chr9 67973078 67974006 + 0 NA exon (ENSMUSG00000035284.10, exon 3 of 3) protein_coding-exon (ENSMUSG00000035284.10, exon 3 of 3) 52172 ENSMUSG00000111841.1 ENSMUSG00000111841 ENSMUST00000216827 Gm20745 lincRNA Interval_80855 chr18 49500690 49501387 + 0 NA Intergenic Intergenic -22251 ENSMUSG00000100297.1 ENSMUSG00000100297 ENSMUST00000190201 1700044K03Rik lincRNA Interval_105316 chr3 84828933 84829605 + 0 NA intron (ENSMUSG00000028086.15, intron 1 of 2) protein_coding-intron (ENSMUSG00000028086.15, intron 1 of 13) 13503 ENSMUSG00000028086.15 ENSMUSG00000028086 ENSMUST00000029727 Fbxw7 protein_coding Interval_150862 chr7 115940215 115940737 + 0 NA intron (ENSMUSG00000051910.13, intron 2 of 11) protein_coding-intron (ENSMUSG00000051910.13, intron 2 of 16) -54798 ENSMUSG00000108489.1 ENSMUSG00000108489 ENSMUST00000206043 Gm45025 antisense Interval_149769 chr7 101361113 101361957 + 0 NA promoter-TSS (ENSMUSG00000032812.18) protein_coding-promoter-TSS (ENSMUSG00000032812.18) -7096 ENSMUSG00000109656.1 ENSMUSG00000109656 ENSMUST00000210076 Gm45548 TEC Interval_43701 chr13 35383413 35383853 + 0 NA Intergenic Intergenic -11750 ENSMUSG00000114838.1 ENSMUSG00000114838 ENSMUST00000226101 Gm48703 lincRNA Interval_40217 chr12 102599433 102599698 + 0 NA intron (ENSMUSG00000057963.9, intron 3 of 4) protein_coding-intron (ENSMUSG00000057963.9, intron 4 of 9) -8155 ENSMUSG00000102953.1 ENSMUSG00000102953 ENSMUST00000192133 Gm37019 TEC Interval_174300 chrX 144275949 144276561 + 0 NA Intergenic Intergenic -8051 ENSMUSG00000081897.1 ENSMUSG00000081897 ENSMUST00000119534 Gm15067 processed_pseudogene Interval_44974 chr13 51078374 51079674 + 0 NA Intergenic Intergenic -55295 ENSMUSG00000021395.11 ENSMUSG00000021395 ENSMUST00000223152 Spin1 protein_coding Interval_168309 chr9 78589370 78590285 + 0 NA Intergenic Intergenic -1800 ENSMUSG00000049624.14 ENSMUSG00000049624 ENSMUST00000119213 Slc17a5 protein_coding Interval_22366 chr11 9176843 9177129 + 0 NA Intergenic Intergenic -16465 ENSMUSG00000004668.14 ENSMUSG00000004668 ENSMUST00000151522 Abca13 protein_coding Interval_40751 chr12 108152920 108153220 + 0 NA intron (ENSMUSG00000056770.15, intron 1 of 2) protein_coding-intron (ENSMUSG00000056770.15, intron 6 of 12) 9939 ENSMUSG00000056770.15 ENSMUSG00000056770 ENSMUST00000125916 Setd3 protein_coding Interval_125648 chr5 73019224 73019808 + 0 NA TTS (ENSMUSG00000070733.13) protein_coding-TTS (ENSMUSG00000070733.13) 4317 ENSMUSG00000107373.1 ENSMUSG00000107373 ENSMUST00000200747 Gm42668 TEC Interval_40972 chr12 110362900 110363329 + 0 NA Intergenic Intergenic 37729 ENSMUSG00000114183.1 ENSMUSG00000114183 ENSMUST00000222991 Gm47195 processed_pseudogene Interval_65894 chr16 30101993 30102651 + 0 NA Intergenic Intergenic -9440 ENSMUSG00000116997.1 ENSMUSG00000116997 ENSMUST00000232024 Gm20040 processed_pseudogene Interval_23744 chr11 25735468 25735889 + 0 NA intron (ENSMUSG00000032985.15, intron 2 of 5) protein_coding-intron (ENSMUSG00000032985.15, intron 4 of 6) 33463 ENSMUSG00000032985.15 ENSMUSG00000032985 ENSMUST00000125987 5730522E02Rik protein_coding Interval_113318 chr4 53439021 53441391 + 0 NA promoter-TSS (ENSMUSG00000028412.17) protein_coding-promoter-TSS (ENSMUSG00000028412.17) -465 ENSMUSG00000028412.17 ENSMUSG00000028412 ENSMUST00000133582 Slc44a1 protein_coding Interval_96469 chr2 124234686 124236111 + 0 NA intron (ENSMUSG00000027200.17, intron 1 of 4) protein_coding-intron (ENSMUSG00000027200.17, intron 2 of 20) -13067 ENSMUSG00000086954.1 ENSMUSG00000086954 ENSMUST00000136658 4930583P06Rik lincRNA Interval_94882 chr2 99909267 99909753 + 0 NA Intergenic Intergenic -149423 ENSMUSG00000082259.1 ENSMUSG00000082259 ENSMUST00000121353 Gm13808 processed_pseudogene Interval_19791 chr10 108936207 108936521 + 0 NA intron (ENSMUSG00000035864.14, intron 1 of 1) protein_coding-intron (ENSMUSG00000035864.14, intron 1 of 10) 20124 ENSMUSG00000112905.1 ENSMUSG00000112905 ENSMUST00000219940 Gm47477 TEC Interval_21042 chr10 125164290 125165498 + 0 NA Intergenic Intergenic -144018 ENSMUSG00000109803.1 ENSMUSG00000109803 ENSMUST00000209665 Gm45604 antisense Interval_24419 chr11 33122421 33123343 + 0 NA intron (ENSMUSG00000057967.12, intron 3 of 3) protein_coding-intron (ENSMUSG00000057967.12, intron 4 of 4) 23913 ENSMUSG00000057967.12 ENSMUSG00000057967 ENSMUST00000020507 Fgf18 protein_coding Interval_46680 chr13 68749684 68750378 + 0 NA intron (ENSMUSG00000021536.7, intron 4 of 24) protein_coding-intron (ENSMUSG00000021536.7, intron 4 of 24) -60049 ENSMUSG00000098242.1 ENSMUSG00000098242 ENSMUST00000182703 Gm26929 processed_pseudogene Interval_169151 chr9 94634098 94634464 + 0 NA Intergenic Intergenic -9738 ENSMUSG00000089551.1 ENSMUSG00000089551 ENSMUST00000158926 Gm24178 snRNA Interval_94519 chr2 91866043 91866288 + 0 NA intron (ENSMUSG00000040506.16, intron 11 of 17) protein_coding-intron (ENSMUSG00000040506.16, intron 10 of 16) 54763 ENSMUSG00000075036.1 ENSMUSG00000075036 ENSMUST00000099710 Gm10805 pseudogene Interval_5499 chr1 89302459 89303308 + 0 NA exon (ENSMUSG00000101288.1, exon 3 of 3) lincRNA-exon (ENSMUSG00000101288.1, exon 3 of 3) -45902 ENSMUSG00000102083.1 ENSMUSG00000102083 ENSMUST00000191231 Gm5259 processed_pseudogene Interval_124695 chr5 53358095 53358850 + 0 NA Intergenic Intergenic -12100 ENSMUSG00000077696.1 ENSMUSG00000077696 ENSMUST00000104508 n-R5s172 rRNA Interval_31029 chr11 97797094 97797567 + 0 NA Intergenic Intergenic -14968 ENSMUSG00000071415.6 ENSMUSG00000071415 ENSMUST00000128801 Rpl23 protein_coding Interval_41420 chr12 113685123 113685820 + 0 NA TTS (ENSMUSG00000096498.3) IG_V_gene-TTS (ENSMUSG00000096498.3) 574 ENSMUSG00000096498.3 ENSMUSG00000096498 ENSMUST00000195707 Ighv2-5 IG_V_gene Interval_106957 chr3 102183750 102184947 + 0 NA TTS (ENSMUSG00000027860.15) protein_coding-TTS (ENSMUSG00000027860.15) -19608 ENSMUSG00000089916.1 ENSMUSG00000089916 ENSMUST00000160105 Gm16160 antisense Interval_105270 chr3 84418117 84418866 + 0 NA Intergenic Intergenic -38570 ENSMUSG00000104004.1 ENSMUSG00000104004 ENSMUST00000192777 4930565D16Rik lincRNA Interval_42621 chr13 17002909 17003237 + 0 NA intron (ENSMUSG00000055137.7, intron 12 of 13) protein_coding-intron (ENSMUSG00000055137.7, intron 12 of 13) -47848 ENSMUSG00000098218.1 ENSMUSG00000098218 ENSMUST00000182807 Gm27043 processed_pseudogene Interval_9967 chr1 164436331 164436669 + 0 NA TTS (ENSMUSG00000026576.12) protein_coding-TTS (ENSMUSG00000026576.12) 7219 ENSMUSG00000026576.12 ENSMUSG00000026576 ENSMUST00000192522 Atp1b1 protein_coding Interval_16412 chr10 62781965 62782230 + 0 NA exon (ENSMUSG00000112806.1, exon 1 of 1) TEC-exon (ENSMUSG00000112806.1, exon 1 of 1) 1090 ENSMUSG00000112806.1 ENSMUSG00000112806 ENSMUST00000218355 Gm48146 TEC Interval_51121 chr14 23653962 23655174 + 0 NA intron (ENSMUSG00000063142.15, intron 1 of 28) protein_coding-intron (ENSMUSG00000063142.15, intron 1 of 28) 94320 ENSMUSG00000100100.1 ENSMUSG00000100100 ENSMUST00000187439 Gm29626 antisense Interval_146872 chr7 54148933 54149189 + 0 NA Intergenic Intergenic 64324 ENSMUSG00000092856.2 ENSMUSG00000092856 ENSMUST00000175115 Gm25956 miRNA Interval_62821 chr15 97230336 97230790 + 0 NA Intergenic Intergenic 16559 ENSMUSG00000048218.6 ENSMUSG00000048218 ENSMUST00000053106 Amigo2 protein_coding Interval_125808 chr5 74321683 74321981 + 0 NA intron (ENSMUSG00000062110.14, intron 5 of 7) protein_coding-intron (ENSMUSG00000062110.14, intron 5 of 8) -4798 ENSMUSG00000080700.2 ENSMUSG00000080700 ENSMUST00000119196 Gm15981 transcribed_processed_pseudogene Interval_103045 chr3 34716477 34716951 + 0 NA promoter-TSS (ENSMUSG00000105153.4) lincRNA-promoter-TSS (ENSMUSG00000105153.4) -52 ENSMUSG00000105153.4 ENSMUSG00000105153 ENSMUST00000198364 Gm3143 lincRNA Interval_147136 chr7 63744520 63744843 + 0 NA intron (ENSMUSG00000033510.14, intron 8 of 10) protein_coding-intron (ENSMUSG00000033510.14, intron 11 of 13) -21193 ENSMUSG00000108421.1 ENSMUSG00000108421 ENSMUST00000206886 Gm44718 lincRNA Interval_14169 chr10 28269297 28269663 + 0 NA intron (ENSMUSG00000019889.10, intron 3 of 14) protein_coding-intron (ENSMUSG00000019889.10, intron 3 of 31) -55359 ENSMUSG00000076377.1 ENSMUSG00000076377 ENSMUST00000102422 Gm22370 miRNA Interval_4936 chr1 82803651 82804423 + 0 NA Intergenic Intergenic 3431 ENSMUSG00000102280.1 ENSMUSG00000102280 ENSMUST00000192756 Gm36999 TEC Interval_119445 chr4 137673648 137673847 + 0 NA intron (ENSMUSG00000041351.16, intron 1 of 4) protein_coding-intron (ENSMUSG00000041351.16, intron 1 of 8) 8993 ENSMUSG00000041351.16 ENSMUSG00000041351 ENSMUST00000144059 Rap1gap protein_coding Interval_51872 chr14 33213752 33215502 + 0 NA intron (ENSMUSG00000063506.14, intron 1 of 1) protein_coding-intron (ENSMUSG00000063506.14, intron 1 of 1) 601 ENSMUSG00000063506.14 ENSMUSG00000063506 ENSMUST00000132659 Arhgap22 protein_coding Interval_113448 chr4 55049908 55051901 + 0 NA intron (ENSMUSG00000060206.11, intron 8 of 12) protein_coding-intron (ENSMUSG00000060206.11, intron 6 of 10) -65659 ENSMUSG00000082704.1 ENSMUSG00000082704 ENSMUST00000120116 Gm12515 processed_pseudogene Interval_67319 chr16 46021928 46023205 + 0 NA Intergenic Intergenic -4393 ENSMUSG00000095243.1 ENSMUSG00000095243 ENSMUST00000177997 Gm24754 snRNA Interval_56375 chr14 118209579 118209954 + 0 NA exon (ENSMUSG00000115774.1, exon 1 of 2) lincRNA-exon (ENSMUSG00000115774.1, exon 1 of 2) -2532 ENSMUSG00000115774.1 ENSMUSG00000115774 ENSMUST00000227956 4933431J24Rik lincRNA Interval_17291 chr10 75635427 75637073 + 0 NA TTS (ENSMUSG00000006342.15) protein_coding-TTS (ENSMUSG00000006342.15) 7758 ENSMUSG00000006342.15 ENSMUSG00000006342 ENSMUST00000077610 Susd2 protein_coding Interval_87203 chr19 46848142 46849704 + 0 NA intron (ENSMUSG00000064105.13, intron 1 of 1) protein_coding-intron (ENSMUSG00000064105.13, intron 1 of 6) -16737 ENSMUSG00000064105.13 ENSMUSG00000064105 ENSMUST00000235671 Cnnm2 protein_coding Interval_146448 chr7 45998815 45999513 + 0 NA intron (ENSMUSG00000030834.7, intron 1 of 3) protein_coding-intron (ENSMUSG00000030834.7, intron 15 of 30) 1905 ENSMUSG00000030834.7 ENSMUSG00000030834 ENSMUST00000211780 Abcc6 protein_coding Interval_121359 chr4 155241776 155242744 + 0 NA Intergenic Intergenic -7706 ENSMUSG00000073684.13 ENSMUSG00000073684 ENSMUST00000156404 Faap20 protein_coding Interval_70244 chr17 7197642 7198520 + 0 NA intron (ENSMUSG00000023809.10, intron 1 of 20) protein_coding-intron (ENSMUSG00000023809.10, intron 1 of 20) 27954 ENSMUSG00000023809.10 ENSMUSG00000023809 ENSMUST00000231530 Rps6ka2 protein_coding Interval_122224 chr5 20325111 20325960 + 0 NA intron (ENSMUSG00000040003.18, intron 2 of 15) protein_coding-intron (ENSMUSG00000040003.18, intron 6 of 22) 61194 ENSMUSG00000087768.1 ENSMUSG00000087768 ENSMUST00000157143 Gm22755 snRNA Interval_102415 chr3 25073513 25074486 + 0 NA intron (ENSMUSG00000102758.3, intron 1 of 2) protein_coding-intron (ENSMUSG00000102758.3, intron 1 of 2) -66294 ENSMUSG00000105009.1 ENSMUSG00000105009 ENSMUST00000198854 Gm42774 processed_pseudogene Interval_83674 chr19 3648056 3650016 + 0 NA intron (ENSMUSG00000024913.16, intron 5 of 22) protein_coding-intron (ENSMUSG00000024913.16, intron 4 of 22) 37525 ENSMUSG00000024913.16 ENSMUSG00000024913 ENSMUST00000176867 Lrp5 protein_coding Interval_60886 chr15 77504325 77504684 + 0 NA Intergenic Intergenic -3767 ENSMUSG00000091650.2 ENSMUSG00000091650 ENSMUST00000172191 Apol11a protein_coding Interval_133086 chr5 149715224 149716203 + 0 NA intron (ENSMUSG00000051950.10, intron 4 of 14) protein_coding-intron (ENSMUSG00000051950.10, intron 4 of 14) -23819 ENSMUSG00000051950.10 ENSMUSG00000051950 ENSMUST00000201088 B3glct protein_coding Interval_125991 chr5 76651343 76652297 + 0 NA Intergenic Intergenic -6510 ENSMUSG00000036377.19 ENSMUSG00000036377 ENSMUST00000149216 C530008M17Rik protein_coding Interval_20024 chr10 112160064 112160658 + 0 NA promoter-TSS (ENSMUSG00000112611.1) protein_coding-promoter-TSS (ENSMUSG00000112611.1) -34 ENSMUSG00000112611.1 ENSMUSG00000112611 ENSMUST00000220085 Glipr1l3 protein_coding Interval_59198 chr15 47746752 47747632 + 0 NA intron (ENSMUSG00000022311.15, intron 35 of 70) protein_coding-intron (ENSMUSG00000022311.15, intron 35 of 70) -43365 ENSMUSG00000089828.2 ENSMUSG00000089828 ENSMUST00000160031 Gm16300 processed_pseudogene Interval_156771 chr8 58818482 58818965 + 0 NA intron (ENSMUSG00000096914.3, intron 2 of 12) protein_coding-intron (ENSMUSG00000096914.3, intron 1 of 3) -93534 ENSMUSG00000049946.7 ENSMUSG00000049946 ENSMUST00000160055 BC030500 protein_coding Interval_38907 chr12 83721306 83721674 + 0 NA intron (ENSMUSG00000019969.14, intron 5 of 6) protein_coding-intron (ENSMUSG00000019969.14, intron 5 of 11) 9967 ENSMUSG00000114050.1 ENSMUSG00000114050 ENSMUST00000222646 Gm47666 antisense Interval_131607 chr5 138747013 138747210 + 0 NA Intergenic Intergenic -7976 ENSMUSG00000025854.15 ENSMUSG00000025854 ENSMUST00000161641 Fam20c protein_coding Interval_171904 chr9 122337760 122338019 + 0 NA Intergenic Intergenic -13900 ENSMUSG00000032540.16 ENSMUSG00000032540 ENSMUST00000154161 Abhd5 protein_coding Interval_96565 chr2 125773619 125773985 + 0 NA intron (ENSMUSG00000035093.16, intron 2 of 17) protein_coding-intron (ENSMUSG00000035093.16, intron 2 of 17) -13488 ENSMUSG00000035093.16 ENSMUSG00000035093 ENSMUST00000136450 Secisbp2l protein_coding Interval_106040 chr3 91212889 91213723 + 0 NA Intergenic Intergenic -122503 ENSMUSG00000091175.2 ENSMUSG00000091175 ENSMUST00000166173 S100a7l2 protein_coding Interval_63671 chr15 102698133 102698971 + 0 NA Intergenic Intergenic 11508 ENSMUSG00000023055.10 ENSMUSG00000023055 ENSMUST00000230374 Calcoco1 protein_coding Interval_133360 chr6 3677615 3678873 + 0 NA Intergenic Intergenic 43141 ENSMUSG00000076357.2 ENSMUSG00000076357 ENSMUST00000102402 Mir653 miRNA Interval_23394 chr11 22194235 22195088 + 0 NA intron (ENSMUSG00000042302.14, intron 5 of 24) protein_coding-intron (ENSMUSG00000042302.14, intron 4 of 23) 92134 ENSMUSG00000042302.14 ENSMUSG00000042302 ENSMUST00000137594 Ehbp1 protein_coding Interval_29848 chr11 87253926 87254614 + 0 NA intron (ENSMUSG00000046442.4, intron 1 of 3) protein_coding-intron (ENSMUSG00000046442.4, intron 1 of 6) -50403 ENSMUSG00000080976.1 ENSMUSG00000080976 ENSMUST00000118128 Gm11490 processed_pseudogene Interval_128915 chr5 116052429 116053459 + 0 NA intron (ENSMUSG00000079278.2, intron 1 of 2) protein_coding-intron (ENSMUSG00000079278.2, intron 1 of 2) -20631 ENSMUSG00000090728.1 ENSMUSG00000090728 ENSMUST00000164753 Gm17420 pseudogene Interval_159684 chr8 97137758 97138179 + 0 NA Intergenic Intergenic -25825 ENSMUSG00000110715.1 ENSMUSG00000110715 ENSMUST00000212776 Gm5131 processed_pseudogene Interval_9365 chr1 156605153 156605713 + 0 NA intron (ENSMUSG00000026596.13, intron 1 of 2) protein_coding-intron (ENSMUSG00000026596.13, intron 1 of 11) -10490 ENSMUSG00000026596.13 ENSMUSG00000026596 ENSMUST00000190749 Abl2 protein_coding Interval_61801 chr15 84235277 84236037 + 0 NA intron (ENSMUSG00000022438.6, intron 1 of 12) protein_coding-intron (ENSMUSG00000022438.6, intron 1 of 12) -21483 ENSMUSG00000022438.6 ENSMUSG00000022438 ENSMUST00000131158 Parvb protein_coding Interval_85118 chr19 23004141 23004465 + 0 NA intron (ENSMUSG00000097930.2, intron 1 of 1) lincRNA-intron (ENSMUSG00000097930.2, intron 1 of 1) -57151 ENSMUSG00000118155.1 ENSMUSG00000118155 ENSMUST00000235686 Gm50136 lincRNA Interval_91987 chr2 52140299 52140564 + 0 NA intron (ENSMUSG00000026950.18, intron 164 of 164) protein_coding-intron (ENSMUSG00000026950.18, intron 73 of 73) 28298 ENSMUSG00000036202.16 ENSMUSG00000036202 ENSMUST00000152178 Rif1 protein_coding Interval_51637 chr14 30988698 30989017 + 0 NA TTS (ENSMUSG00000021918.10) protein_coding-TTS (ENSMUSG00000021918.10) 12815 ENSMUSG00000021917.16 ENSMUSG00000021917 ENSMUST00000226374 Spcs1 protein_coding Interval_170514 chr9 108448983 108449219 + 0 NA exon (ENSMUSG00000032609.12, exon 4 of 6) protein_coding-exon (ENSMUSG00000032609.12, exon 4 of 6) 10977 ENSMUSG00000032609.12 ENSMUSG00000032609 ENSMUST00000193618 Klhdc8b protein_coding Interval_137663 chr6 78235797 78236082 + 0 NA Intergenic Intergenic 20061 ENSMUSG00000108045.1 ENSMUSG00000108045 ENSMUST00000075809 Gm5576 processed_pseudogene Interval_159152 chr8 91126049 91126328 + 0 NA intron (ENSMUSG00000031667.16, intron 5 of 6) protein_coding-intron (ENSMUSG00000031667.16, intron 6 of 9) 7809 ENSMUSG00000031667.16 ENSMUSG00000031667 ENSMUST00000211576 Aktip protein_coding Interval_76349 chr17 79337471 79338128 + 0 NA intron (ENSMUSG00000036533.9, intron 1 of 1) protein_coding-intron (ENSMUSG00000036533.9, intron 1 of 1) 15208 ENSMUSG00000036533.9 ENSMUSG00000036533 ENSMUST00000233363 Cdc42ep3 protein_coding Interval_97264 chr2 132721791 132722716 + 0 NA intron (ENSMUSG00000044991.10, intron 1 of 1) protein_coding-intron (ENSMUSG00000044991.10, intron 2 of 2) 5147 ENSMUSG00000064413.1 ENSMUSG00000064413 ENSMUST00000082479 Gm22245 snRNA Interval_24057 chr11 29834325 29834564 + 0 NA intron (ENSMUSG00000044072.14, intron 11 of 41) protein_coding-intron (ENSMUSG00000044072.14, intron 11 of 41) -5931 ENSMUSG00000080851.1 ENSMUSG00000080851 ENSMUST00000121781 Gm12094 processed_pseudogene Interval_91727 chr2 48892657 48892874 + 0 NA intron (ENSMUSG00000052155.5, intron 2 of 5) protein_coding-intron (ENSMUSG00000052155.5, intron 6 of 10) 2376 ENSMUSG00000052155.5 ENSMUSG00000052155 ENSMUST00000156681 Acvr2a protein_coding Interval_158677 chr8 85096796 85097096 + 0 NA intron (ENSMUSG00000005142.10, intron 22 of 23) protein_coding-intron (ENSMUSG00000005142.10, intron 22 of 23) 12658 ENSMUSG00000005142.10 ENSMUSG00000005142 ENSMUST00000211223 Man2b1 protein_coding Interval_141061 chr6 124753993 124754258 + 0 NA intron (ENSMUSG00000107478.1, intron 1 of 12) protein_coding-intron (ENSMUSG00000004263.15, intron 1 of 9) 1896 ENSMUSG00000107478.1 ENSMUSG00000107478 ENSMUST00000129411 Gm45234 protein_coding Interval_25862 chr11 52227380 52227902 + 0 NA Intergenic Intergenic -4396 ENSMUSG00000036309.14 ENSMUSG00000036309 ENSMUST00000116595 Skp1a protein_coding Interval_73008 chr17 34107899 34111310 + 0 NA exon (ENSMUSG00000117772.1, exon 2 of 3) lincRNA-exon (ENSMUSG00000117772.1, exon 2 of 3) 7591 ENSMUSG00000024335.20 ENSMUSG00000024335 ENSMUST00000179687 Brd2 protein_coding Interval_159869 chr8 104501487 104501774 + 0 NA intron (ENSMUSG00000052616.10, intron 2 of 17) protein_coding-intron (ENSMUSG00000052616.10, intron 3 of 19) -6272 ENSMUSG00000077633.1 ENSMUSG00000077633 ENSMUST00000104445 Gm22148 snRNA Interval_71687 chr17 25426833 25427607 + 0 NA intron (ENSMUSG00000024112.16, intron 2 of 8) protein_coding-intron (ENSMUSG00000024112.16, intron 2 of 34) -37748 ENSMUSG00000024112.16 ENSMUSG00000024112 ENSMUST00000159052 Cacna1h protein_coding Interval_204 KQ030491.1 3280 3866 + 0 NA NA NA NA NA Interval_94783 chr2 94272929 94274303 + 0 NA Intergenic Intergenic -9008 ENSMUSG00000075020.6 ENSMUSG00000075020 ENSMUST00000134563 Mir670hg lincRNA Interval_158974 chr8 88332282 88333113 + 0 NA TTS (ENSMUSG00000031660.13) protein_coding-TTS (ENSMUSG00000031660.13) 10137 ENSMUSG00000031660.13 ENSMUSG00000031660 ENSMUST00000135471 Brd7 protein_coding Interval_13187 chr10 12908933 12910134 + 0 NA Intergenic Intergenic 13557 ENSMUSG00000097378.8 ENSMUSG00000097378 ENSMUST00000180529 B230208H11Rik lincRNA Interval_76539 chr17 80847017 80847990 + 0 NA Intergenic Intergenic -49290 ENSMUSG00000112121.1 ENSMUSG00000112121 ENSMUST00000220067 C230072F16Rik lincRNA Interval_150118 chr7 106907667 106908147 + 0 NA promoter-TSS (ENSMUSG00000073899.3) protein_coding-promoter-TSS (ENSMUSG00000073899.3) -94 ENSMUSG00000073899.3 ENSMUSG00000073899 ENSMUST00000098140 Olfr1532-ps1 protein_coding Interval_53096 chr14 54426386 54427396 + 0 NA promoter-TSS (ENSMUSG00000010406.12) protein_coding-promoter-TSS (ENSMUSG00000010406.12) -21 ENSMUSG00000010406.12 ENSMUSG00000010406 ENSMUST00000196273 Mrpl52 protein_coding Interval_16120 chr10 60834911 60835135 + 0 NA Intergenic Intergenic -3641 ENSMUSG00000020099.8 ENSMUSG00000020099 ENSMUST00000218637 Unc5b protein_coding Interval_75257 chr17 65500524 65500847 + 0 NA intron (ENSMUSG00000045036.15, intron 2 of 14) protein_coding-intron (ENSMUSG00000045036.15, intron 3 of 15) -8683 ENSMUSG00000092908.1 ENSMUSG00000092908 ENSMUST00000175167 Gm25731 miRNA Interval_83311 chr18 84085058 84086015 + 0 NA promoter-TSS (ENSMUSG00000046982.11) protein_coding-promoter-TSS (ENSMUSG00000046982.11) 2170 ENSMUSG00000046982.11 ENSMUSG00000046982 ENSMUST00000237918 Tshz1 protein_coding Interval_173374 chrX 85646293 85646642 + 0 NA Intergenic Intergenic 57490 ENSMUSG00000106312.1 ENSMUSG00000106312 ENSMUST00000117001 Gm44378 miRNA Interval_173481 chrX 95025734 95027085 + 0 NA exon (ENSMUSG00000071722.4, exon 1 of 1) protein_coding-exon (ENSMUSG00000071722.4, exon 1 of 1) 273 ENSMUSG00000071722.4 ENSMUSG00000071722 ENSMUST00000096367 Spin4 protein_coding Interval_153549 chr8 3368271 3368579 + 0 NA intron (ENSMUSG00000004568.13, intron 2 of 28) protein_coding-intron (ENSMUSG00000004568.13, intron 2 of 10) 14988 ENSMUSG00000004568.13 ENSMUSG00000004568 ENSMUST00000145360 Arhgef18 protein_coding Interval_98417 chr2 152227417 152228985 + 0 NA intron (ENSMUSG00000074698.10, intron 1 of 3) protein_coding-intron (ENSMUSG00000074698.10, intron 1 of 12) 1288 ENSMUSG00000074698.10 ENSMUSG00000074698 ENSMUST00000141597 Csnk2a1 protein_coding Interval_97674 chr2 142611206 142611469 + 0 NA Intergenic Intergenic 34409 ENSMUSG00000083215.3 ENSMUSG00000083215 ENSMUST00000119377 Rbmx2-ps processed_pseudogene Interval_61803 chr15 84247995 84248382 + 0 NA intron (ENSMUSG00000022438.6, intron 1 of 12) protein_coding-intron (ENSMUSG00000022438.6, intron 1 of 12) -8952 ENSMUSG00000022438.6 ENSMUSG00000022438 ENSMUST00000131158 Parvb protein_coding Interval_41920 chr13 4498843 4499216 + 0 NA intron (ENSMUSG00000054757.14, intron 7 of 7) protein_coding-intron (ENSMUSG00000054757.14, intron 7 of 8) 24284 ENSMUSG00000054757.14 ENSMUSG00000054757 ENSMUST00000078239 Akr1c20 protein_coding Interval_135818 chr6 47536685 47536882 + 0 NA intron (ENSMUSG00000029687.16, intron 1 of 4) protein_coding-intron (ENSMUSG00000029687.16, intron 15 of 19) 17087 ENSMUSG00000029686.15 ENSMUSG00000029686 ENSMUST00000149531 Cul1 protein_coding Interval_78376 chr18 12278268 12278814 + 0 NA intron (ENSMUSG00000057766.14, intron 2 of 5) protein_coding-intron (ENSMUSG00000057766.14, intron 5 of 9) 3804 ENSMUSG00000057766.14 ENSMUSG00000057766 ENSMUST00000142066 Ankrd29 protein_coding Interval_88117 chr19 59356947 59357291 + 0 NA Intergenic Intergenic -11339 ENSMUSG00000074746.3 ENSMUSG00000074746 ENSMUST00000099274 Pdzd8 protein_coding Interval_142226 chr6 139253934 139254183 + 0 NA Intergenic Intergenic -57827 ENSMUSG00000088903.1 ENSMUSG00000088903 ENSMUST00000158278 Gm25434 scaRNA Interval_92926 chr2 68740387 68740588 + 0 NA intron (ENSMUSG00000079324.11, intron 25 of 28) protein_coding-intron (ENSMUSG00000079324.11, intron 24 of 27) 24196 ENSMUSG00000079324.11 ENSMUSG00000079324 ENSMUST00000135023 4932414N04Rik protein_coding Interval_129063 chr5 117158889 117159832 + 0 NA intron (ENSMUSG00000061288.13, intron 1 of 12) protein_coding-intron (ENSMUSG00000061288.13, intron 1 of 19) 25772 ENSMUSG00000061288.13 ENSMUSG00000061288 ENSMUST00000111975 Taok3 protein_coding Interval_83694 chr19 3779885 3780749 + 0 NA intron (ENSMUSG00000045098.19, intron 4 of 13) protein_coding-intron (ENSMUSG00000045098.19, intron 1 of 8) 12171 ENSMUSG00000045098.19 ENSMUSG00000045098 ENSMUST00000176125 Kmt5b protein_coding Interval_163193 chr9 17684782 17685190 + 0 NA Intergenic Intergenic -34077 ENSMUSG00000111506.1 ENSMUSG00000111506 ENSMUST00000216550 Gm48848 processed_pseudogene Interval_58992 chr15 41454746 41455042 + 0 NA intron (ENSMUSG00000022307.16, intron 1 of 15) protein_coding-intron (ENSMUSG00000022307.16, intron 1 of 15) -211736 ENSMUSG00000116178.1 ENSMUSG00000116178 ENSMUST00000229823 Gm49529 processed_pseudogene Interval_1009 chr1 13931132 13931459 + 0 NA Intergenic Intergenic -1083 ENSMUSG00000089358.1 ENSMUSG00000089358 ENSMUST00000158733 Gm25491 misc_RNA Interval_142581 chr6 143531373 143532742 + 0 NA Intergenic Intergenic 3451 ENSMUSG00000084971.1 ENSMUSG00000084971 ENSMUST00000132321 4930579D09Rik lincRNA Interval_162520 chr9 3584669 3584964 + 0 NA intron (ENSMUSG00000041624.10, intron 3 of 4) protein_coding-intron (ENSMUSG00000041624.10, intron 3 of 7) 51928 ENSMUSG00000041624.10 ENSMUSG00000041624 ENSMUST00000212705 Gucy1a2 protein_coding Interval_142721 chr6 145149040 145149827 + 0 NA intron (ENSMUSG00000030263.13, intron 5 of 8) protein_coding-intron (ENSMUSG00000030263.13, intron 7 of 18) 3959 ENSMUSG00000030263.13 ENSMUSG00000030263 ENSMUST00000135191 Lrmp protein_coding Interval_132432 chr5 144894486 144894690 + 0 NA intron (ENSMUSG00000038780.14, intron 2 of 6) protein_coding-intron (ENSMUSG00000038780.14, intron 7 of 17) 2228 ENSMUSG00000098822.1 ENSMUSG00000098822 ENSMUST00000183852 Mir7039 miRNA Interval_14229 chr10 29206425 29207270 + 0 NA intron (ENSMUSG00000110723.1, intron 1 of 2) protein_coding-intron (ENSMUSG00000110723.1, intron 1 of 2) -4848 ENSMUSG00000004360.9 ENSMUSG00000004360 ENSMUST00000213489 9330159F19Rik protein_coding Interval_69762 chr16 96102599 96103462 + 0 NA intron (ENSMUSG00000117270.1, intron 2 of 4) lincRNA-intron (ENSMUSG00000117270.1, intron 2 of 4) 5825 ENSMUSG00000117270.1 ENSMUSG00000117270 ENSMUST00000233464 Gm49953 lincRNA Interval_50179 chr14 8680033 8680868 + 0 NA Intergenic Intergenic -6969 ENSMUSG00000114764.1 ENSMUSG00000114764 ENSMUST00000225348 Gm20241 processed_pseudogene Interval_89170 chr2 17830157 17831131 + 0 NA Intergenic Intergenic -32660 ENSMUSG00000081851.1 ENSMUSG00000081851 ENSMUST00000120245 Gm13323 processed_pseudogene Interval_88130 chr19 59454089 59454455 + 0 NA intron (ENSMUSG00000087095.2, intron 1 of 3) antisense-intron (ENSMUSG00000087095.2, intron 1 of 3) 4363 ENSMUSG00000087095.2 ENSMUSG00000087095 ENSMUST00000136990 Emx2os antisense Interval_70854 chr17 15414195 15414481 + 0 NA intron (ENSMUSG00000014763.8, intron 4 of 10) protein_coding-intron (ENSMUSG00000014763.8, intron 4 of 10) 10934 ENSMUSG00000014763.8 ENSMUSG00000014763 ENSMUST00000231318 Fam120b protein_coding Interval_140301 chr6 116266204 116266957 + 0 NA promoter-TSS (ENSMUSG00000042213.17) protein_coding-promoter-TSS (ENSMUSG00000042213.17) 2315 ENSMUSG00000042213.17 ENSMUSG00000042213 ENSMUST00000221824 Zfand4 protein_coding Interval_107486 chr3 108044312 108045342 + 0 NA promoter-TSS (ENSMUSG00000027890.17) protein_coding-promoter-TSS (ENSMUSG00000027890.17) 32 ENSMUSG00000027890.17 ENSMUSG00000027890 ENSMUST00000106670 Gstm4 protein_coding Interval_16484 chr10 63130567 63131086 + 0 NA intron (ENSMUSG00000020067.8, intron 13 of 19) protein_coding-intron (ENSMUSG00000020067.8, intron 13 of 19) -8142 ENSMUSG00000020067.8 ENSMUSG00000020067 ENSMUST00000218978 Mypn protein_coding Interval_2384 chr1 38862165 38862599 + 0 NA Intergenic Intergenic -22372 ENSMUSG00000103647.1 ENSMUSG00000103647 ENSMUST00000195309 Gm37707 antisense Interval_46444 chr13 65299144 65299368 + 0 NA intron (ENSMUSG00000021514.18, intron 7 of 7) protein_coding-intron (ENSMUSG00000021514.18, intron 7 of 7) -3150 ENSMUSG00000021514.18 ENSMUSG00000021514 ENSMUST00000222364 Zfp369 protein_coding Interval_160512 chr8 110176488 110178008 + 0 NA Intergenic Intergenic -9038 ENSMUSG00000003657.9 ENSMUSG00000003657 ENSMUST00000003754 Calb2 protein_coding Interval_110785 chr4 8377263 8377509 + 0 NA Intergenic Intergenic 76861 ENSMUSG00000103127.1 ENSMUSG00000103127 ENSMUST00000194755 Gm37386 TEC Interval_163351 chr9 21014347 21017256 + 0 NA promoter-TSS (ENSMUSG00000037405.8) protein_coding-promoter-TSS (ENSMUSG00000037405.8) -184 ENSMUSG00000037405.8 ENSMUSG00000037405 ENSMUST00000086399 Icam1 protein_coding Interval_22032 chr11 5885988 5887626 + 0 NA Intergenic Intergenic -9145 ENSMUSG00000020471.11 ENSMUSG00000020471 ENSMUST00000134957 Pold2 protein_coding Interval_74947 chr17 57768535 57770228 + 0 NA promoter-TSS (ENSMUSG00000038048.8) protein_coding-promoter-TSS (ENSMUSG00000038048.8) -189 ENSMUSG00000038048.8 ENSMUSG00000038048 ENSMUST00000076038 Cntnap5c protein_coding Interval_173700 chrX 102166732 102167580 + 0 NA Intergenic Intergenic -10065 ENSMUSG00000051220.2 ENSMUSG00000051220 ENSMUST00000056904 Ercc6l protein_coding Interval_9316 chr1 156169801 156170129 + 0 NA intron (ENSMUSG00000015484.3, intron 1 of 4) protein_coding-intron (ENSMUSG00000015484.3, intron 1 of 4) 35061 ENSMUSG00000015484.3 ENSMUSG00000015484 ENSMUST00000015628 Fam163a protein_coding Interval_158177 chr8 79553297 79553654 + 0 NA Intergenic Intergenic -2727 ENSMUSG00000097975.1 ENSMUSG00000097975 ENSMUST00000182695 Gm8079 processed_pseudogene Interval_121701 chr5 5491888 5492110 + 0 NA intron (ENSMUSG00000046798.14, intron 3 of 3) protein_coding-intron (ENSMUSG00000046798.14, intron 3 of 3) -12919 ENSMUSG00000079666.8 ENSMUSG00000079666 ENSMUST00000156282 1700015F17Rik protein_coding Interval_79788 chr18 35118347 35119829 + 0 NA promoter-TSS (ENSMUSG00000037815.7) protein_coding-promoter-TSS (ENSMUSG00000037815.7) -31465 ENSMUSG00000117727.1 ENSMUSG00000117727 ENSMUST00000238134 Gm3587 lincRNA Interval_86613 chr19 42051653 42053303 + 0 NA TTS (ENSMUSG00000025176.14) protein_coding-TTS (ENSMUSG00000025176.14) 230 ENSMUSG00000090369.3 ENSMUSG00000090369 ENSMUST00000164518 4933411K16Rik protein_coding Interval_164190 chr9 32356650 32357048 + 0 NA intron (ENSMUSG00000111056.1, intron 2 of 2) lincRNA-intron (ENSMUSG00000111056.1, intron 2 of 2) 8167 ENSMUSG00000111056.1 ENSMUSG00000111056 ENSMUST00000213360 Gm39317 lincRNA Interval_145531 chr7 35401108 35401991 + 0 NA intron (ENSMUSG00000023072.14, intron 2 of 4) protein_coding-intron (ENSMUSG00000023072.14, intron 2 of 18) 4419 ENSMUSG00000023072.14 ENSMUSG00000023072 ENSMUST00000150421 Cep89 protein_coding Interval_172772 chrX 48506525 48506803 + 0 NA intron (ENSMUSG00000036932.14, intron 1 of 14) protein_coding-intron (ENSMUSG00000036932.14, intron 1 of 15) -12621 ENSMUSG00000031104.2 ENSMUSG00000031104 ENSMUST00000033430 Rab33a protein_coding Interval_21178 chr10 127063099 127064102 + 0 NA promoter-TSS (ENSMUSG00000006728.12) protein_coding-promoter-TSS (ENSMUSG00000006728.12) -2476 ENSMUSG00000006728.12 ENSMUSG00000006728 ENSMUST00000145670 Cdk4 protein_coding Interval_160153 chr8 106753639 106754017 + 0 NA intron (ENSMUSG00000041949.6, intron 14 of 17) protein_coding-intron (ENSMUSG00000041949.6, intron 14 of 17) 70713 ENSMUSG00000041949.6 ENSMUSG00000041949 ENSMUST00000211979 Tango6 protein_coding Interval_137516 chr6 72843384 72843842 + 0 NA intron (ENSMUSG00000055239.10, intron 3 of 3) protein_coding-intron (ENSMUSG00000055239.10, intron 6 of 6) 52306 ENSMUSG00000107610.1 ENSMUSG00000107610 ENSMUST00000205107 D530018E20Rik TEC Interval_159181 chr8 91436133 91436578 + 0 NA intron (ENSMUSG00000055932.15, intron 4 of 4) protein_coding-intron (ENSMUSG00000055932.15, intron 3 of 8) -13951 ENSMUSG00000110079.1 ENSMUSG00000110079 ENSMUST00000211232 Gm45292 TEC Interval_151129 chr7 118727041 118727727 + 0 NA intron (ENSMUSG00000033904.16, intron 1 of 6) protein_coding-intron (ENSMUSG00000033904.16, intron 7 of 13) 829 ENSMUSG00000033904.16 ENSMUSG00000033904 ENSMUST00000140831 Ccp110 protein_coding Interval_160223 chr8 107247834 107248667 + 0 NA Intergenic Intergenic 14998 ENSMUSG00000057657.4 ENSMUSG00000057657 ENSMUST00000080443 Rps18-ps3 processed_pseudogene Interval_80869 chr18 49746485 49747600 + 0 NA intron (ENSMUSG00000024505.16, intron 1 of 4) protein_coding-intron (ENSMUSG00000024505.16, intron 1 of 3) 8525 ENSMUSG00000024505.16 ENSMUSG00000024505 ENSMUST00000237137 Dtwd2 protein_coding Interval_160365 chr8 108761855 108762118 + 0 NA intron (ENSMUSG00000038872.10, intron 1 of 9) protein_coding-intron (ENSMUSG00000038872.10, intron 1 of 9) 24393 ENSMUSG00000104292.1 ENSMUSG00000104292 ENSMUST00000191614 Gm38042 TEC Interval_38487 chr12 79442714 79443351 + 0 NA intron (ENSMUSG00000059060.15, intron 1 of 2) protein_coding-intron (ENSMUSG00000059060.15, intron 7 of 7) 115679 ENSMUSG00000059060.15 ENSMUSG00000059060 ENSMUST00000221257 Rad51b protein_coding Interval_166128 chr9 56891344 56892023 + 0 NA TTS (ENSMUSG00000032911.6) protein_coding-TTS (ENSMUSG00000032911.6) -4640 ENSMUSG00000032911.6 ENSMUSG00000032911 ENSMUST00000217052 Cspg4 protein_coding Interval_41443 chr12 114012241 114013338 + 0 NA TTS (ENSMUSG00000103271.1) IG_V_pseudogene-TTS (ENSMUSG00000103271.1) 817 ENSMUSG00000103271.1 ENSMUSG00000103271 ENSMUST00000192975 Ighv4-2 IG_V_pseudogene Interval_15114 chr10 42645843 42646911 + 0 NA intron (ENSMUSG00000038280.12, intron 2 of 6) protein_coding-intron (ENSMUSG00000038280.12, intron 2 of 5) -32589 ENSMUSG00000038280.12 ENSMUSG00000038280 ENSMUST00000154048 Ostm1 protein_coding Interval_134680 chr6 30323599 30323948 + 0 NA intron (ENSMUSG00000084861.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000084861.1, intron 1 of 1) 19152 ENSMUSG00000084861.1 ENSMUSG00000084861 ENSMUST00000140275 1700095J07Rik lincRNA Interval_112203 chr4 35610611 35611595 + 0 NA Intergenic Intergenic 174889 ENSMUSG00000083851.1 ENSMUSG00000083851 ENSMUST00000117931 Gm12365 processed_pseudogene Interval_85829 chr19 32202652 32202934 + 0 NA intron (ENSMUSG00000040451.18, intron 3 of 10) protein_coding-intron (ENSMUSG00000040451.18, intron 5 of 9) 6480 ENSMUSG00000118064.1 ENSMUSG00000118064 ENSMUST00000235377 Gm50210 sense_intronic Interval_58125 chr15 28181805 28182786 + 0 NA Intergenic Intergenic 9827 ENSMUSG00000115806.1 ENSMUSG00000115806 ENSMUST00000228611 Gm49234 TEC Interval_659 chr1 9639377 9639689 + 0 NA intron (ENSMUSG00000099827.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000099827.1, intron 1 of 1) 1049 ENSMUSG00000099827.1 ENSMUSG00000099827 ENSMUST00000191209 Gm29520 lincRNA Interval_151499 chr7 123107402 123108383 + 0 NA intron (ENSMUSG00000110230.1, intron 2 of 2) lincRNA-intron (ENSMUSG00000110230.1, intron 2 of 2) -63754 ENSMUSG00000052707.8 ENSMUSG00000052707 ENSMUST00000206126 Tnrc6a protein_coding Interval_16841 chr10 69104650 69105661 + 0 NA Intergenic Intergenic -7289 ENSMUSG00000112083.1 ENSMUSG00000112083 ENSMUST00000218524 Gm47107 lincRNA Interval_34575 chr12 5269213 5269405 + 0 NA intron (ENSMUSG00000020627.10, intron 1 of 11) protein_coding-intron (ENSMUSG00000020627.10, intron 2 of 13) 22072 ENSMUSG00000020627.10 ENSMUSG00000020627 ENSMUST00000218384 Klhl29 protein_coding Interval_26724 chr11 60019895 60020234 + 0 NA intron (ENSMUSG00000000301.16, intron 1 of 3) protein_coding-intron (ENSMUSG00000000301.16, intron 2 of 6) -48554 ENSMUSG00000000301.16 ENSMUSG00000000301 ENSMUST00000133028 Pemt protein_coding Interval_86588 chr19 41911617 41913268 + 0 NA intron (ENSMUSG00000011752.7, intron 1 of 1) protein_coding-intron (ENSMUSG00000011752.7, intron 1 of 3) 404 ENSMUSG00000011752.7 ENSMUSG00000011752 ENSMUST00000235468 Pgam1 protein_coding Interval_46129 chr13 61891067 61893131 + 0 NA Intergenic Intergenic -25450 ENSMUSG00000113887.1 ENSMUSG00000113887 ENSMUST00000222548 Gm35619 processed_pseudogene Interval_1073 chr1 15017313 15018410 + 0 NA Intergenic Intergenic 1298 ENSMUSG00000088159.1 ENSMUSG00000088159 ENSMUST00000157534 Gm26345 snoRNA Interval_103670 chr3 51510903 51513019 + 0 NA Intergenic Intergenic 22341 ENSMUSG00000102570.1 ENSMUSG00000102570 ENSMUST00000195131 Gm37968 TEC Interval_108859 chr3 132766068 132766562 + 0 NA intron (ENSMUSG00000028030.12, intron 22 of 25) protein_coding-intron (ENSMUSG00000028030.12, intron 22 of 23) -1092 ENSMUSG00000105719.1 ENSMUSG00000105719 ENSMUST00000200026 Gm42872 TEC Interval_124647 chr5 52813498 52813724 + 0 NA intron (ENSMUSG00000029179.14, intron 4 of 7) protein_coding-intron (ENSMUSG00000029179.14, intron 8 of 11) 30495 ENSMUSG00000029179.14 ENSMUSG00000029179 ENSMUST00000143745 Zcchc4 protein_coding Interval_139915 chr6 112696105 112696999 + 0 NA promoter-TSS (ENSMUSG00000030254.16) protein_coding-promoter-TSS (ENSMUSG00000030254.16) 81 ENSMUSG00000030254.16 ENSMUSG00000030254 ENSMUST00000135092 Rad18 protein_coding Interval_45026 chr13 51593996 51596115 + 0 NA Intergenic Intergenic -25568 ENSMUSG00000021448.8 ENSMUSG00000021448 ENSMUST00000221850 Shc3 protein_coding Interval_78542 chr18 14615742 14615972 + 0 NA Intergenic Intergenic 21549 ENSMUSG00000037013.17 ENSMUSG00000037013 ENSMUST00000234544 Ss18 protein_coding Interval_173563 chrX 99448936 99449531 + 0 NA Intergenic Intergenic -5436 ENSMUSG00000073051.4 ENSMUSG00000073051 ENSMUST00000156494 Gm14812 lincRNA Interval_13264 chr10 13713083 13713916 + 0 NA intron (ENSMUSG00000019806.13, intron 3 of 5) protein_coding-intron (ENSMUSG00000019806.13, intron 3 of 5) 86301 ENSMUSG00000112055.1 ENSMUSG00000112055 ENSMUST00000219684 Gm48773 lincRNA Interval_91297 chr2 37545390 37545647 + 0 NA TTS (ENSMUSG00000035437.15) protein_coding-TTS (ENSMUSG00000035437.15) 29186 ENSMUSG00000053164.6 ENSMUSG00000053164 ENSMUST00000065441 Gpr21 protein_coding Interval_141415 chr6 128104547 128105930 + 0 NA intron (ENSMUSG00000030352.15, intron 1 of 6) protein_coding-intron (ENSMUSG00000030352.15, intron 1 of 8) -10212 ENSMUSG00000076327.1 ENSMUSG00000076327 ENSMUST00000102372 Gm26338 miRNA Interval_111496 chr4 22203814 22204211 + 0 NA Intergenic Intergenic -71821 ENSMUSG00000083376.1 ENSMUSG00000083376 ENSMUST00000121463 Gm11882 processed_pseudogene Interval_129881 chr5 122899420 122901000 + 0 NA exon (ENSMUSG00000029475.17, exon 1 of 12) protein_coding-exon (ENSMUSG00000029475.17, exon 1 of 12) 8190 ENSMUSG00000105979.1 ENSMUSG00000105979 ENSMUST00000196235 Gm43411 TEC Interval_145155 chr7 30336469 30336956 + 0 NA Intergenic Intergenic 1914 ENSMUSG00000118440.1 ENSMUSG00000118440 ENSMUST00000238389 Gm50483 processed_pseudogene Interval_137885 chr6 83141989 83143546 + 0 NA intron (ENSMUSG00000034930.16, intron 1 of 3) protein_coding-intron (ENSMUSG00000034930.16, intron 1 of 11) -8543 ENSMUSG00000034930.16 ENSMUSG00000034930 ENSMUST00000213056 Rtkn protein_coding Interval_26416 chr11 57740872 57741972 + 0 NA TTS (ENSMUSG00000077155.1) snRNA-TTS (ENSMUSG00000077155.1) 122 ENSMUSG00000077155.1 ENSMUSG00000077155 ENSMUST00000103967 Gm24582 snRNA Interval_85560 chr19 28555254 28555920 + 0 NA intron (ENSMUSG00000052942.13, intron 2 of 10) protein_coding-intron (ENSMUSG00000052942.13, intron 2 of 9) 27707 ENSMUSG00000089952.1 ENSMUSG00000089952 ENSMUST00000162380 4933413C19Rik sense_intronic Interval_25447 chr11 48644653 48645629 + 0 NA Intergenic Intergenic -39568 ENSMUSG00000088425.1 ENSMUSG00000088425 ENSMUST00000157800 Gm24422 snoRNA Interval_168608 chr9 84117313 84117530 + 0 NA intron (ENSMUSG00000032263.14, intron 1 of 2) protein_coding-intron (ENSMUSG00000032263.14, intron 9 of 10) -70934 ENSMUSG00000077666.1 ENSMUSG00000077666 ENSMUST00000104478 Gm26146 snRNA Interval_47407 chr13 83654844 83655360 + 0 NA intron (ENSMUSG00000005583.16, intron 6 of 8) protein_coding-intron (ENSMUSG00000005583.16, intron 8 of 10) -32120 ENSMUSG00000114254.1 ENSMUSG00000114254 ENSMUST00000224411 Gm48067 processed_pseudogene Interval_478 chr1 6152423 6152849 + 0 NA Intergenic Intergenic 62657 ENSMUSG00000090031.2 ENSMUSG00000090031 ENSMUST00000097832 4732440D04Rik antisense Interval_138089 chr6 85098803 85099588 + 0 NA Intergenic Intergenic 2268 ENSMUSG00000107536.1 ENSMUSG00000107536 ENSMUST00000204332 Gm43955 processed_pseudogene Interval_101090 chr2 177880478 177881900 + 0 NA Intergenic Intergenic -11449 ENSMUSG00000082901.1 ENSMUSG00000082901 ENSMUST00000122418 Rps8-ps5 processed_pseudogene Interval_2132 chr1 36632823 36633415 + 0 NA intron (ENSMUSG00000046337.17, intron 5 of 14) protein_coding-intron (ENSMUSG00000046337.17, intron 5 of 9) -30846 ENSMUSG00000077939.1 ENSMUSG00000077939 ENSMUST00000104746 Gm24133 miRNA Interval_6455 chr1 109610123 109610311 + 0 NA Intergenic Intergenic 12920 ENSMUSG00000089037.1 ENSMUSG00000089037 ENSMUST00000158412 Gm22159 snoRNA Interval_99696 chr2 164369881 164370613 + 0 NA intron (ENSMUSG00000017002.14, intron 1 of 2) protein_coding-intron (ENSMUSG00000017002.14, intron 1 of 2) -15864 ENSMUSG00000098489.1 ENSMUSG00000098489 ENSMUST00000185076 Mir7678 miRNA Interval_168537 chr9 83298669 83300535 + 0 NA Intergenic Intergenic -45580 ENSMUSG00000098747.7 ENSMUSG00000098747 ENSMUST00000184080 Gm27216 lincRNA Interval_134942 chr6 33986601 33987500 + 0 NA intron (ENSMUSG00000087441.1, intron 2 of 2) lincRNA-intron (ENSMUSG00000087441.1, intron 2 of 2) 5361 ENSMUSG00000087441.1 ENSMUSG00000087441 ENSMUST00000155496 Gm13853 lincRNA Interval_72549 chr17 30626166 30627862 + 0 NA promoter-TSS (ENSMUSG00000099474.1) bidirectional_promoter_lncRNA-promoter-TSS (ENSMUSG00000099474.1) -109 ENSMUSG00000099474.1 ENSMUSG00000099474 ENSMUST00000188852 1700097N02Rik bidirectional_promoter_lncRNA Interval_19575 chr10 103526294 103527619 + 0 NA intron (ENSMUSG00000112319.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000112319.1, intron 1 of 1) 14028 ENSMUSG00000112319.1 ENSMUSG00000112319 ENSMUST00000218784 Gm47221 lincRNA Interval_166505 chr9 60196419 60196670 + 0 NA intron (ENSMUSG00000032289.15, intron 6 of 16) protein_coding-intron (ENSMUSG00000032289.15, intron 7 of 17) -137598 ENSMUSG00000111296.1 ENSMUSG00000111296 ENSMUST00000214235 2010001M07Rik antisense Interval_166715 chr9 62221391 62223288 + 0 NA Intergenic Intergenic -19331 ENSMUSG00000110826.1 ENSMUSG00000110826 ENSMUST00000217557 Gm47262 lincRNA Interval_12722 chr10 4492965 4493603 + 0 NA intron (ENSMUSG00000019767.12, intron 1 of 10) protein_coding-intron (ENSMUSG00000019767.12, intron 1 of 10) 9050 ENSMUSG00000065371.1 ENSMUSG00000065371 ENSMUST00000083437 Gm22739 snRNA Interval_125941 chr5 76040635 76041087 + 0 NA Intergenic Intergenic -2237 ENSMUSG00000106756.1 ENSMUSG00000106756 ENSMUST00000201402 Gm32780 lincRNA Interval_18400 chr10 85541651 85542174 + 0 NA intron (ENSMUSG00000020042.15, intron 1 of 16) protein_coding-intron (ENSMUSG00000020042.15, intron 1 of 9) -103291 ENSMUSG00000020042.15 ENSMUSG00000020042 ENSMUST00000145433 Btbd11 protein_coding Interval_77311 chr17 87971824 87972155 + 0 NA Intergenic Intergenic -2769 ENSMUSG00000117522.1 ENSMUSG00000117522 ENSMUST00000234265 Gm50041 processed_pseudogene Interval_70600 chr17 12226687 12228781 + 0 NA TTS (ENSMUSG00000014426.9) protein_coding-TTS (ENSMUSG00000014426.9) 37813 ENSMUSG00000063911.4 ENSMUSG00000063911 ENSMUST00000074412 Tdgf1-ps2 processed_pseudogene Interval_71826 chr17 26367725 26368917 + 0 NA Intergenic Intergenic -45699 ENSMUSG00000117551.1 ENSMUSG00000117551 ENSMUST00000234840 Gm50015 lincRNA Interval_43670 chr13 34851013 34851584 + 0 NA Intergenic Intergenic 15279 ENSMUSG00000114127.1 ENSMUSG00000114127 ENSMUST00000221617 Gm8231 processed_pseudogene Interval_95218 chr2 104858841 104859320 + 0 NA Intergenic Intergenic -9587 ENSMUSG00000027171.10 ENSMUSG00000027171 ENSMUST00000126824 Prrg4 protein_coding Interval_137771 chr6 82261897 82263662 + 0 NA Intergenic Intergenic 20605 ENSMUSG00000108224.1 ENSMUSG00000108224 ENSMUST00000204563 Gm31861 processed_pseudogene Interval_166498 chr9 60115125 60115399 + 0 NA intron (ENSMUSG00000032289.15, intron 6 of 16) protein_coding-intron (ENSMUSG00000032289.15, intron 1 of 11) -73083 ENSMUSG00000088090.1 ENSMUSG00000088090 ENSMUST00000157465 Gm23668 rRNA Interval_41021 chr12 110658247 110658539 + 0 NA promoter-TSS (ENSMUSG00000018707.13) protein_coding-promoter-TSS (ENSMUSG00000018707.13) 7015 ENSMUSG00000090327.1 ENSMUSG00000090327 ENSMUST00000169981 Gm17111 antisense Interval_169316 chr9 96348837 96350480 + 0 NA promoter-TSS (ENSMUSG00000032412.8) protein_coding-promoter-TSS (ENSMUSG00000032412.8) -6077 ENSMUSG00000032412.8 ENSMUSG00000032412 ENSMUST00000187341 Atp1b3 protein_coding Interval_92206 chr2 56358857 56359099 + 0 NA Intergenic Intergenic 319125 ENSMUSG00000082142.1 ENSMUSG00000082142 ENSMUST00000120018 Gm13518 processed_pseudogene Interval_16925 chr10 69942744 69943432 + 0 NA intron (ENSMUSG00000069601.14, intron 26 of 42) protein_coding-intron (ENSMUSG00000069601.14, intron 1 of 16) -231923 ENSMUSG00000048701.13 ENSMUSG00000048701 ENSMUST00000135607 Ccdc6 protein_coding Interval_18549 chr10 87484657 87485543 + 0 NA Intergenic Intergenic 8560 ENSMUSG00000020052.9 ENSMUSG00000020052 ENSMUST00000020243 Ascl1 protein_coding Interval_24307 chr11 32238432 32238886 + 0 NA promoter-TSS (ENSMUSG00000020289.15) protein_coding-promoter-TSS (ENSMUSG00000020289.15) 12129 ENSMUSG00000020287.15 ENSMUSG00000020287 ENSMUST00000138050 Mpg protein_coding Interval_125200 chr5 65299439 65301172 + 0 NA intron (ENSMUSG00000029191.16, intron 6 of 24) protein_coding-intron (ENSMUSG00000029191.16, intron 6 of 24) 8689 ENSMUSG00000105935.1 ENSMUSG00000105935 ENSMUST00000197871 Gm43628 TEC Interval_161529 chr8 120992515 120993130 + 0 NA intron (ENSMUSG00000092329.1, intron 1 of 15) protein_coding-intron (ENSMUSG00000092329.1, intron 1 of 15) -10105 ENSMUSG00000101886.1 ENSMUSG00000101886 ENSMUST00000187913 Gm28324 lincRNA Interval_150267 chr7 109129598 109129850 + 0 NA Intergenic Intergenic -13163 ENSMUSG00000109107.1 ENSMUSG00000109107 ENSMUST00000208480 Gm44781 antisense Interval_33452 chr11 116620092 116620368 + 0 NA intron (ENSMUSG00000020806.15, intron 1 of 18) protein_coding-intron (ENSMUSG00000020806.15, intron 1 of 18) -17635 ENSMUSG00000020806.15 ENSMUSG00000020806 ENSMUST00000126819 Rhbdf2 protein_coding Interval_99677 chr2 164134185 164134749 + 0 NA intron (ENSMUSG00000018209.15, intron 2 of 2) protein_coding-intron (ENSMUSG00000018209.15, intron 10 of 10) -1236 ENSMUSG00000085538.1 ENSMUSG00000085538 ENSMUST00000149285 Gm11455 antisense Interval_162160 chr8 125603363 125605404 + 0 NA intron (ENSMUSG00000110629.1, intron 2 of 3) lincRNA-intron (ENSMUSG00000110629.1, intron 2 of 2) 19736 ENSMUSG00000110629.1 ENSMUSG00000110629 ENSMUST00000212530 4930567H12Rik lincRNA Interval_127326 chr5 102905366 102906044 + 0 NA Intergenic Intergenic 46367 ENSMUSG00000105253.1 ENSMUSG00000105253 ENSMUST00000196071 Gm42522 processed_pseudogene Interval_35401 chr12 21359787 21360018 + 0 NA intron (ENSMUSG00000052593.16, intron 2 of 5) protein_coding-intron (ENSMUSG00000052593.16, intron 2 of 18) 5548 ENSMUSG00000088997.1 ENSMUSG00000088997 ENSMUST00000158372 Gm22766 snRNA Interval_134287 chr6 24589829 24590258 + 0 NA Intergenic Intergenic -4487 ENSMUSG00000107189.1 ENSMUSG00000107189 ENSMUST00000202403 Gm42689 processed_pseudogene Interval_85423 chr19 25671847 25674552 + 0 NA promoter-TSS (ENSMUSG00000101089.1) antisense-promoter-TSS (ENSMUSG00000101089.1) 788 ENSMUSG00000048138.10 ENSMUSG00000048138 ENSMUST00000053068 Dmrt2 protein_coding Interval_139771 chr6 108551862 108552200 + 0 NA TTS (ENSMUSG00000030102.11) protein_coding-TTS (ENSMUSG00000030102.11) 13557 ENSMUSG00000043024.6 ENSMUSG00000043024 ENSMUST00000062429 Gm16433 processed_pseudogene Interval_116831 chr4 117564128 117564741 + 0 NA promoter-TSS (ENSMUSG00000033423.16) protein_coding-promoter-TSS (ENSMUSG00000033423.16) -324 ENSMUSG00000033423.16 ENSMUSG00000033423 ENSMUST00000134379 Eri3 protein_coding Interval_144021 chr7 19014488 19014712 + 0 NA exon (ENSMUSG00000040891.6, exon 2 of 2) protein_coding-exon (ENSMUSG00000040891.6, exon 2 of 2) 8938 ENSMUSG00000040891.6 ENSMUSG00000040891 ENSMUST00000036018 Foxa3 protein_coding Interval_19929 chr10 111317385 111318881 + 0 NA Intergenic Intergenic -18991 ENSMUSG00000112246.1 ENSMUSG00000112246 ENSMUST00000219123 Gm40761 lincRNA Interval_96120 chr2 119896830 119898550 + 0 NA intron (ENSMUSG00000033943.15, intron 1 of 20) protein_coding-intron (ENSMUSG00000033943.15, intron 1 of 24) 385 ENSMUSG00000033943.15 ENSMUSG00000033943 ENSMUST00000131396 Mga protein_coding Interval_158822 chr8 86871091 86871485 + 0 NA intron (ENSMUSG00000031652.11, intron 1 of 6) protein_coding-intron (ENSMUSG00000031652.11, intron 1 of 6) -14400 ENSMUSG00000098434.1 ENSMUSG00000098434 ENSMUST00000184161 2010110E17Rik lincRNA Interval_154047 chr8 12225688 12225980 + 0 NA Intergenic Intergenic -52985 ENSMUSG00000074473.1 ENSMUSG00000074473 ENSMUST00000098935 A230072I06Rik protein_coding Interval_79813 chr18 35262683 35262984 + 0 NA Intergenic Intergenic -1196 ENSMUSG00000117876.1 ENSMUSG00000117876 ENSMUST00000236119 Gm50146 antisense Interval_31193 chr11 98809353 98810446 + 0 NA promoter-TSS (ENSMUSG00000078676.9) protein_coding-promoter-TSS (ENSMUSG00000078676.9) 91 ENSMUSG00000078676.9 ENSMUSG00000078676 ENSMUST00000147065 Casc3 protein_coding Interval_85593 chr19 28916602 28916940 + 0 NA intron (ENSMUSG00000064202.15, intron 11 of 11) protein_coding-intron (ENSMUSG00000064202.15, intron 11 of 11) -4892 ENSMUSG00000064202.15 ENSMUSG00000064202 ENSMUST00000161813 4430402I18Rik protein_coding Interval_87312 chr19 47571728 47572315 + 0 NA Intergenic Intergenic 30308 ENSMUSG00000118206.1 ENSMUSG00000118206 ENSMUST00000237007 Gm50358 antisense Interval_44495 chr13 45374630 45375819 + 0 NA Intergenic Intergenic -15703 ENSMUSG00000038175.10 ENSMUSG00000038175 ENSMUST00000222178 Mylip protein_coding Interval_77006 chr17 85607675 85609330 + 0 NA exon (ENSMUSG00000093460.9, exon 4 of 4) processed_transcript-exon (ENSMUSG00000093460.9, exon 4 of 4) -3174 ENSMUSG00000098775.1 ENSMUSG00000098775 ENSMUST00000183588 Gm27435 misc_RNA Interval_164253 chr9 34498443 34499283 + 0 NA intron (ENSMUSG00000032036.15, intron 3 of 3) protein_coding-intron (ENSMUSG00000032036.15, intron 1 of 16) 10068 ENSMUSG00000032036.15 ENSMUSG00000032036 ENSMUST00000188658 Kirrel3 protein_coding Interval_136737 chr6 58780404 58781136 + 0 NA TTS (ENSMUSG00000108164.1) processed_pseudogene-TTS (ENSMUSG00000108164.1) 1167 ENSMUSG00000108164.1 ENSMUSG00000108164 ENSMUST00000203675 Gm43899 processed_pseudogene Interval_27870 chr11 70524765 70526366 + 0 NA promoter-TSS (ENSMUSG00000018286.6) protein_coding-promoter-TSS (ENSMUSG00000018286.6) -545 ENSMUSG00000018286.6 ENSMUSG00000018286 ENSMUST00000128870 Psmb6 protein_coding Interval_112716 chr4 44357717 44359072 + 0 NA intron (ENSMUSG00000035683.13, intron 16 of 17) protein_coding-intron (ENSMUSG00000035683.13, intron 16 of 17) -24528 ENSMUSG00000083803.1 ENSMUSG00000083803 ENSMUST00000121242 Gm12455 processed_pseudogene Interval_73129 chr17 34970979 34972730 + 0 NA promoter-TSS (ENSMUSG00000007033.4) protein_coding-promoter-TSS (ENSMUSG00000007033.4) 302 ENSMUSG00000091971.3 ENSMUSG00000091971 ENSMUST00000087328 Hspa1a protein_coding Interval_11000 chr1 177939738 177940569 + 0 NA intron (ENSMUSG00000102483.2, intron 17 of 21) protein_coding-intron (ENSMUSG00000102483.2, intron 17 of 21) -51283 ENSMUSG00000091476.8 ENSMUSG00000091476 ENSMUST00000239155 Catspere2 protein_coding Interval_145473 chr7 35028651 35029380 + 0 NA intron (ENSMUSG00000063931.14, intron 4 of 5) protein_coding-intron (ENSMUSG00000063931.14, intron 11 of 14) 23522 ENSMUSG00000108486.1 ENSMUSG00000108486 ENSMUST00000205869 Gm44836 sense_intronic Interval_108032 chr3 120650940 120651384 + 0 NA intron (ENSMUSG00000098097.7, intron 7 of 11) lincRNA-intron (ENSMUSG00000098097.7, intron 7 of 11) -41069 ENSMUSG00000089027.1 ENSMUSG00000089027 ENSMUST00000158402 Gm25013 snoRNA Interval_118223 chr4 129608406 129610611 + 0 NA promoter-TSS (ENSMUSG00000078552.10) protein_coding-promoter-TSS (ENSMUSG00000078552.10) 4749 ENSMUSG00000078552.10 ENSMUSG00000078552 ENSMUST00000106037 Dcdc2b protein_coding Interval_51139 chr14 24081830 24082359 + 0 NA promoter-TSS (ENSMUSG00000118519.1) antisense-promoter-TSS (ENSMUSG00000118519.1) -27 ENSMUSG00000118519.1 ENSMUSG00000118519 ENSMUST00000238857 AC163638.2 antisense Interval_82749 chr18 76436985 76437904 + 0 NA Intergenic Intergenic 115620 ENSMUSG00000117816.1 ENSMUSG00000117816 ENSMUST00000235901 Gm50360 processed_pseudogene Interval_145197 chr7 30588103 30589742 + 0 NA promoter-TSS (ENSMUSG00000006307.16) protein_coding-promoter-TSS (ENSMUSG00000006307.16) -458 ENSMUSG00000098553.1 ENSMUSG00000098553 ENSMUST00000185080 Mir3569 miRNA Interval_140616 chr6 120111911 120112937 + 0 NA intron (ENSMUSG00000041377.12, intron 1 of 3) protein_coding-intron (ENSMUSG00000041377.12, intron 1 of 3) 19074 ENSMUSG00000041377.12 ENSMUSG00000041377 ENSMUST00000035244 Ninj2 protein_coding Interval_119567 chr4 138415967 138417152 + 0 NA Intergenic Intergenic -9229 ENSMUSG00000083326.4 ENSMUSG00000083326 ENSMUST00000117723 Rpl38-ps1 processed_pseudogene Interval_100863 chr2 172976720 172977995 + 0 NA promoter-TSS (ENSMUSG00000005883.15) protein_coding-promoter-TSS (ENSMUSG00000005883.15) -8520 ENSMUSG00000005883.15 ENSMUSG00000005883 ENSMUST00000156471 Spo11 protein_coding Interval_81176 chr18 55755344 55755565 + 0 NA Intergenic Intergenic -9226 ENSMUSG00000098119.1 ENSMUSG00000098119 ENSMUST00000182376 Gm26959 processed_pseudogene Interval_161361 chr8 119946378 119946800 + 0 NA exon (ENSMUSG00000031826.20, exon 1 of 1) protein_coding-exon (ENSMUSG00000031826.20, exon 1 of 1) 189 ENSMUSG00000031826.20 ENSMUSG00000031826 ENSMUST00000139648 Usp10 protein_coding Interval_21338 chr10 128058291 128059787 + 0 NA promoter-TSS (ENSMUSG00000071072.12) protein_coding-promoter-TSS (ENSMUSG00000071072.12) -10233 ENSMUSG00000071072.12 ENSMUSG00000071072 ENSMUST00000148943 Ptges3 protein_coding Interval_18737 chr10 89800091 89800351 + 0 NA intron (ENSMUSG00000019951.10, intron 10 of 11) protein_coding-intron (ENSMUSG00000019951.10, intron 12 of 20) 21225 ENSMUSG00000093967.1 ENSMUSG00000093967 ENSMUST00000179942 Gm26180 snRNA Interval_81558 chr18 61684834 61685502 + 0 NA intron (ENSMUSG00000024578.3, intron 1 of 2) protein_coding-intron (ENSMUSG00000024578.3, intron 1 of 2) 281 ENSMUSG00000024578.3 ENSMUSG00000024578 ENSMUST00000025471 Il17b protein_coding Interval_69276 chr16 91843975 91844922 + 0 NA intron (ENSMUSG00000022957.20, intron 3 of 5) protein_coding-intron (ENSMUSG00000022957.20, intron 19 of 28) -59615 ENSMUSG00000022957.20 ENSMUSG00000022957 ENSMUST00000137575 Itsn1 protein_coding Interval_116383 chr4 110959653 110960143 + 0 NA intron (ENSMUSG00000061298.14, intron 4 of 12) protein_coding-intron (ENSMUSG00000061298.14, intron 4 of 12) -330220 ENSMUSG00000081068.1 ENSMUSG00000081068 ENSMUST00000121030 Gm12804 processed_pseudogene Interval_151010 chr7 117667525 117668137 + 0 NA exon (ENSMUSG00000030657.11, exon 12 of 12) protein_coding-exon (ENSMUSG00000030657.11, exon 12 of 12) -108963 ENSMUSG00000088116.1 ENSMUSG00000088116 ENSMUST00000157491 Gm24063 miRNA Interval_1902 chr1 34439112 34440292 + 0 NA promoter-TSS (ENSMUSG00000026127.13) protein_coding-promoter-TSS (ENSMUSG00000026127.13) -1006 ENSMUSG00000042111.9 ENSMUSG00000042111 ENSMUST00000188583 Ccdc115 protein_coding Interval_75902 chr17 72889202 72889427 + 0 NA Intergenic Intergenic -31874 ENSMUSG00000024063.13 ENSMUSG00000024063 ENSMUST00000148556 Lbh protein_coding Interval_146528 chr7 46661066 46662475 + 0 NA intron (ENSMUSG00000040046.14, intron 2 of 8) protein_coding-intron (ENSMUSG00000040046.14, intron 3 of 10) 3518 ENSMUSG00000040046.14 ENSMUSG00000040046 ENSMUST00000168335 Tph1 protein_coding Interval_107817 chr3 115737637 115738179 + 0 NA Intergenic Intergenic 22758 ENSMUSG00000052769.7 ENSMUSG00000052769 ENSMUST00000064809 Gm9889 lincRNA Interval_159123 chr8 90849251 90849569 + 0 NA promoter-TSS (ENSMUSG00000056608.14) protein_coding-promoter-TSS (ENSMUSG00000056608.14) -257 ENSMUSG00000056608.14 ENSMUSG00000056608 ENSMUST00000211552 Chd9 protein_coding Interval_41102 chr12 111180243 111181162 + 0 NA intron (ENSMUSG00000083193.1, intron 1 of 3) protein_coding-intron (ENSMUSG00000021277.16, intron 1 of 11) 3789 ENSMUSG00000083193.1 ENSMUSG00000083193 ENSMUST00000121608 4930595D18Rik protein_coding Interval_135033 chr6 34858755 34859634 + 0 NA promoter-TSS (ENSMUSG00000106707.1) TEC-promoter-TSS (ENSMUSG00000106707.1) -511 ENSMUSG00000106707.1 ENSMUSG00000106707 ENSMUST00000202329 Gm43748 TEC Interval_46150 chr13 62033638 62036185 + 0 NA promoter-TSS (ENSMUSG00000074868.2) processed_pseudogene-promoter-TSS (ENSMUSG00000074868.2) -511 ENSMUSG00000074868.2 ENSMUSG00000074868 ENSMUST00000099450 Gm6478 processed_pseudogene Interval_171299 chr9 116212704 116214002 + 0 NA Intergenic Intergenic -5449 ENSMUSG00000111324.1 ENSMUSG00000111324 ENSMUST00000217302 Gm31410 lincRNA Interval_9900 chr1 163951788 163952131 + 0 NA exon (ENSMUSG00000026584.14, exon 13 of 14) protein_coding-exon (ENSMUSG00000026584.14, exon 13 of 14) 22169 ENSMUSG00000026584.14 ENSMUSG00000026584 ENSMUST00000162920 Scyl3 protein_coding Interval_45399 chr13 54882577 54883917 + 0 NA Intergenic Intergenic -4223 ENSMUSG00000100728.1 ENSMUSG00000100728 ENSMUST00000189848 Gm29431 lincRNA Interval_73715 chr17 42954096 42954327 + 0 NA Intergenic Intergenic -62357 ENSMUSG00000023915.5 ENSMUSG00000023915 ENSMUST00000233482 Tnfrsf21 protein_coding Interval_114532 chr4 82340499 82340952 + 0 NA intron (ENSMUSG00000008575.17, intron 6 of 6) protein_coding-intron (ENSMUSG00000008575.17, intron 6 of 11) -98685 ENSMUSG00000084595.1 ENSMUSG00000084595 ENSMUST00000122646 n-R5s188 rRNA Interval_157551 chr8 71381104 71382525 + 0 NA promoter-TSS (ENSMUSG00000002393.14) protein_coding-promoter-TSS (ENSMUSG00000002393.14) -6024 ENSMUSG00000002393.14 ENSMUSG00000002393 ENSMUST00000137058 Nr2f6 protein_coding Interval_136384 chr6 54015614 54016663 + 0 NA intron (ENSMUSG00000108060.2, intron 2 of 2) processed_transcript-intron (ENSMUSG00000108060.2, intron 2 of 2) 37409 ENSMUSG00000108060.2 ENSMUSG00000108060 ENSMUST00000203047 4921529L05Rik processed_transcript Interval_33009 chr11 113651539 113652286 + 0 NA exon (ENSMUSG00000018661.17, exon 2 of 14) protein_coding-exon (ENSMUSG00000018661.17, exon 2 of 14) -6666 ENSMUSG00000018661.17 ENSMUSG00000018661 ENSMUST00000137878 Cog1 protein_coding Interval_12875 chr10 7154803 7155389 + 0 NA intron (ENSMUSG00000015202.13, intron 2 of 12) protein_coding-intron (ENSMUSG00000015202.13, intron 2 of 12) -19590 ENSMUSG00000015202.13 ENSMUSG00000015202 ENSMUST00000015346 Cnksr3 protein_coding Interval_49372 chr13 111536327 111536712 + 0 NA intron (ENSMUSG00000085634.2, intron 1 of 1) lincRNA-intron (ENSMUSG00000085634.2, intron 1 of 1) 13392 ENSMUSG00000085634.2 ENSMUSG00000085634 ENSMUST00000132880 Gm15290 lincRNA Interval_157088 chr8 65067801 65068614 + 0 NA Intergenic Intergenic -6826 ENSMUSG00000074302.1 ENSMUSG00000074302 ENSMUST00000098716 Gm10663 protein_coding Interval_71541 chr17 24454584 24455856 + 0 NA promoter-TSS (ENSMUSG00000024137.9) protein_coding-promoter-TSS (ENSMUSG00000024137.9) -3741 ENSMUSG00000024137.9 ENSMUSG00000024137 ENSMUST00000226743 E4f1 protein_coding Interval_11839 chr1 186182563 186183699 + 0 NA TTS (ENSMUSG00000102790.1) TEC-TTS (ENSMUSG00000102790.1) 874 ENSMUSG00000102790.1 ENSMUSG00000102790 ENSMUST00000193401 Gm37272 TEC Interval_86099 chr19 36630903 36631109 + 0 NA intron (ENSMUSG00000087579.7, intron 3 of 4) antisense-intron (ENSMUSG00000087579.7, intron 3 of 4) 27578 ENSMUSG00000087579.7 ENSMUSG00000087579 ENSMUST00000128603 Hectd2os antisense Interval_153193 chr7 142283854 142285297 + 0 NA TTS (ENSMUSG00000109936.1) lincRNA-TTS (ENSMUSG00000109936.1) 1115 ENSMUSG00000109936.1 ENSMUSG00000109936 ENSMUST00000211255 Gm45889 lincRNA Interval_12024 chr1 188920065 188920406 + 0 NA intron (ENSMUSG00000026609.15, intron 63 of 70) protein_coding-intron (ENSMUSG00000026609.15, intron 63 of 70) 87606 ENSMUSG00000026608.13 ENSMUSG00000026608 ENSMUST00000193273 Kctd3 protein_coding Interval_103517 chr3 46247921 46248257 + 0 NA Intergenic Intergenic -41744 ENSMUSG00000077256.1 ENSMUSG00000077256 ENSMUST00000104068 Gm26081 snoRNA Interval_134622 chr6 30011030 30011866 + 0 NA Intergenic Intergenic 23060 ENSMUSG00000095989.1 ENSMUSG00000095989 ENSMUST00000178068 Gm23049 miRNA Interval_94756 chr2 94026559 94026838 + 0 NA Intergenic Intergenic -15946 ENSMUSG00000040174.14 ENSMUSG00000040174 ENSMUST00000130289 Alkbh3 protein_coding Interval_75488 chr17 67262126 67262366 + 0 NA intron (ENSMUSG00000033278.10, intron 1 of 19) protein_coding-intron (ENSMUSG00000033278.10, intron 1 of 32) -236011 ENSMUSG00000093508.1 ENSMUSG00000093508 ENSMUST00000176783 Mir5709 miRNA Interval_29636 chr11 85714051 85715067 + 0 NA intron (ENSMUSG00000086199.7, intron 1 of 5) protein_coding-intron (ENSMUSG00000059439.15, intron 23 of 24) 5185 ENSMUSG00000086199.7 ENSMUSG00000086199 ENSMUST00000146806 Bcas3os1 antisense Interval_12733 chr10 4580128 4580376 + 0 NA Intergenic Intergenic -10029 ENSMUSG00000112330.1 ENSMUSG00000112330 ENSMUST00000217832 Gm3266 processed_pseudogene Interval_2370 chr1 38639869 38640081 + 0 NA intron (ENSMUSG00000037138.18, intron 1 of 22) protein_coding-intron (ENSMUSG00000037138.18, intron 1 of 7) -12774 ENSMUSG00000037138.18 ENSMUSG00000037138 ENSMUST00000134963 Aff3 protein_coding Interval_42970 chr13 21974035 21975690 + 0 NA Intergenic Intergenic -6332 ENSMUSG00000016982.6 ENSMUSG00000016982 ENSMUST00000017126 Pom121l2 protein_coding Interval_157374 chr8 69943711 69943926 + 0 NA intron (ENSMUSG00000036180.15, intron 2 of 12) protein_coding-intron (ENSMUSG00000036180.15, intron 2 of 12) -41106 ENSMUSG00000048967.16 ENSMUSG00000048967 ENSMUST00000152456 Yjefn3 protein_coding Interval_58366 chr15 33632791 33634116 + 0 NA intron (ENSMUSG00000115779.1, intron 3 of 5) antisense-intron (ENSMUSG00000115779.1, intron 3 of 5) 19983 ENSMUSG00000115779.1 ENSMUSG00000115779 ENSMUST00000228272 4930592A05Rik antisense Interval_83663 chr19 3561847 3563759 + 0 NA intron (ENSMUSG00000024908.15, intron 1 of 3) protein_coding-intron (ENSMUSG00000024908.15, intron 1 of 22) 12919 ENSMUSG00000024908.15 ENSMUSG00000024908 ENSMUST00000226109 Ppp6r3 protein_coding Interval_112702 chr4 44223725 44225038 + 0 NA intron (ENSMUSG00000035696.15, intron 1 of 3) protein_coding-intron (ENSMUSG00000035696.15, intron 1 of 3) -3114 ENSMUSG00000092677.1 ENSMUSG00000092677 ENSMUST00000174936 Mir5106 miRNA Interval_159411 chr8 94417987 94418792 + 0 NA Intergenic Intergenic 13178 ENSMUSG00000094257.2 ENSMUSG00000094257 ENSMUST00000178107 Ap3s1-ps2 processed_pseudogene Interval_25052 chr11 43528254 43530789 + 0 NA intron (ENSMUSG00000044707.7, intron 1 of 1) protein_coding-intron (ENSMUSG00000044707.7, intron 2 of 5) 275 ENSMUSG00000044707.7 ENSMUSG00000044707 ENSMUST00000152153 Ccnjl protein_coding Interval_87388 chr19 48294772 48295085 + 0 NA intron (ENSMUSG00000063434.6, intron 1 of 26) protein_coding-intron (ENSMUSG00000063434.6, intron 1 of 26) -54283 ENSMUSG00000089004.1 ENSMUSG00000089004 ENSMUST00000158379 Gm23857 rRNA Interval_115725 chr4 103067670 103069080 + 0 NA intron (ENSMUSG00000035126.19, intron 1 of 7) protein_coding-intron (ENSMUSG00000035126.19, intron 8 of 15) -26758 ENSMUSG00000035126.19 ENSMUSG00000035126 ENSMUST00000148673 Wdr78 protein_coding Interval_26222 chr11 55224696 55224964 + 0 NA intron (ENSMUSG00000020261.15, intron 7 of 10) protein_coding-intron (ENSMUSG00000020261.15, intron 7 of 11) 20468 ENSMUSG00000020261.15 ENSMUSG00000020261 ENSMUST00000108867 Slc36a1 protein_coding Interval_50462 chr14 13728660 13729184 + 0 NA Intergenic Intergenic 49229 ENSMUSG00000098694.1 ENSMUSG00000098694 ENSMUST00000184558 Gm27506 miRNA Interval_33858 chr11 119040622 119041994 + 0 NA promoter-TSS (ENSMUSG00000025578.9) protein_coding-promoter-TSS (ENSMUSG00000025578.9) -397 ENSMUSG00000025578.9 ENSMUSG00000025578 ENSMUST00000143831 Cbx8 protein_coding Interval_2225 chr1 37194542 37195012 + 0 NA Intergenic Intergenic -23602 ENSMUSG00000026114.14 ENSMUSG00000026114 ENSMUST00000027288 Cnga3 protein_coding Interval_148773 chr7 86815107 86816346 + 0 NA TTS (ENSMUSG00000090949.2) protein_coding-TTS (ENSMUSG00000090949.2) 20699 ENSMUSG00000090949.2 ENSMUSG00000090949 ENSMUST00000164996 Vmn2r77 protein_coding Interval_171096 chr9 114512747 114513133 + 0 NA exon (ENSMUSG00000079259.2, exon 4 of 4) protein_coding-exon (ENSMUSG00000079259.2, exon 4 of 4) -2757 ENSMUSG00000097821.2 ENSMUSG00000097821 ENSMUST00000238379 C130032M10Rik antisense Interval_166818 chr9 62971159 62972903 + 0 NA intron (ENSMUSG00000032405.10, intron 1 of 4) protein_coding-intron (ENSMUSG00000032405.10, intron 1 of 13) 15893 ENSMUSG00000032405.10 ENSMUSG00000032405 ENSMUST00000215455 Pias1 protein_coding Interval_150216 chr7 108196055 108197482 + 0 NA Intergenic Intergenic -6377 ENSMUSG00000108916.1 ENSMUSG00000108916 ENSMUST00000207672 Gm18944 processed_pseudogene Interval_18606 chr10 88391697 88392165 + 0 NA intron (ENSMUSG00000035311.16, intron 1 of 19) protein_coding-intron (ENSMUSG00000035311.16, intron 1 of 20) -34935 ENSMUSG00000020057.2 ENSMUSG00000020057 ENSMUST00000138159 Dram1 protein_coding Interval_159630 chr8 95870899 95871248 + 0 NA exon (ENSMUSG00000110711.1, exon 1 of 1) TEC-exon (ENSMUSG00000110711.1, exon 1 of 1) 259 ENSMUSG00000110711.1 ENSMUSG00000110711 ENSMUST00000212190 Gm45760 TEC Interval_172333 chrX 13085458 13085841 + 0 NA intron (ENSMUSG00000031010.17, intron 2 of 16) protein_coding-intron (ENSMUSG00000031010.17, intron 1 of 44) -43411 ENSMUSG00000031010.17 ENSMUSG00000031010 ENSMUST00000133997 Usp9x protein_coding Interval_133015 chr5 149286449 149287786 + 0 NA promoter-TSS (ENSMUSG00000060063.9) protein_coding-promoter-TSS (ENSMUSG00000060063.9) -298 ENSMUSG00000060063.9 ENSMUSG00000060063 ENSMUST00000202629 Alox5ap protein_coding Interval_21519 chr10 129094968 129095268 + 0 NA intron (ENSMUSG00000050198.4, intron 2 of 2) protein_coding-intron (ENSMUSG00000050198.4, intron 2 of 2) 4216 ENSMUSG00000050198.4 ENSMUSG00000050198 ENSMUST00000063031 Olfr768 protein_coding Interval_53062 chr14 54136105 54136682 + 0 NA promoter-TSS (ENSMUSG00000076871.1) TR_J_gene-promoter-TSS (ENSMUSG00000076871.1) -386 ENSMUSG00000076871.1 ENSMUSG00000076871 ENSMUST00000103683 Trdj2 TR_J_gene Interval_39188 chr12 85681601 85682595 + 0 NA Intergenic Intergenic -7194 ENSMUSG00000034266.6 ENSMUSG00000034266 ENSMUST00000222781 Batf protein_coding Interval_51532 chr14 29912556 29912758 + 0 NA Intergenic Intergenic 9707 ENSMUSG00000114606.1 ENSMUSG00000114606 ENSMUST00000223966 Gm7633 transcribed_processed_pseudogene Interval_4368 chr1 73197947 73198275 + 0 NA Intergenic Intergenic 11312 ENSMUSG00000102266.1 ENSMUSG00000102266 ENSMUST00000194107 Gm38106 TEC Interval_21043 chr10 125183462 125185826 + 0 NA Intergenic Intergenic -124268 ENSMUSG00000109803.1 ENSMUSG00000109803 ENSMUST00000209665 Gm45604 antisense Interval_44251 chr13 42958023 42958672 + 0 NA exon (ENSMUSG00000054728.17, exon 4 of 4) protein_coding-exon (ENSMUSG00000054728.17, exon 4 of 4) -40164 ENSMUSG00000090135.1 ENSMUSG00000090135 ENSMUST00000159361 Gm15809 sense_intronic Interval_97298 chr2 133278111 133279790 + 0 NA Intergenic Intergenic -51974 ENSMUSG00000098578.1 ENSMUSG00000098578 ENSMUST00000184570 Gm27449 snRNA Interval_144552 chr7 25843329 25843622 + 0 NA Intergenic Intergenic -14598 ENSMUSG00000090467.3 ENSMUSG00000090467 ENSMUST00000165488 Gm4613 processed_pseudogene Interval_145823 chr7 39616874 39617355 + 0 NA Intergenic Intergenic -13278 ENSMUSG00000070236.1 ENSMUSG00000070236 ENSMUST00000093724 Gm26327 snRNA Interval_38147 chr12 75965558 75965783 + 0 NA exon (ENSMUSG00000063450.14, exon 48 of 116) protein_coding-exon (ENSMUSG00000063450.14, exon 48 of 116) 56567 ENSMUSG00000092922.1 ENSMUSG00000092922 ENSMUST00000175181 Mir5101 miRNA Interval_28392 chr11 75594300 75594847 + 0 NA exon (ENSMUSG00000085088.1, exon 1 of 2) processed_transcript-exon (ENSMUSG00000085088.1, exon 1 of 2) 198 ENSMUSG00000085088.1 ENSMUSG00000085088 ENSMUST00000142068 4931413K12Rik processed_transcript Interval_18348 chr10 85127604 85128751 + 0 NA promoter-TSS (ENSMUSG00000049038.3) protein_coding-promoter-TSS (ENSMUSG00000049038.3) -150 ENSMUSG00000049038.3 ENSMUSG00000049038 ENSMUST00000214193 Mterf2 protein_coding Interval_162348 chr8 127315033 127315262 + 0 NA intron (ENSMUSG00000025812.18, intron 4 of 23) protein_coding-intron (ENSMUSG00000025812.18, intron 4 of 23) 143743 ENSMUSG00000025812.18 ENSMUSG00000025812 ENSMUST00000159940 Pard3 protein_coding Interval_152086 chr7 129032336 129032711 + 0 NA Intergenic Intergenic 22553 ENSMUSG00000108785.1 ENSMUSG00000108785 ENSMUST00000206489 Gm4259 processed_pseudogene Interval_16989 chr10 70300813 70301571 + 0 NA Intergenic Intergenic -13016 ENSMUSG00000052426.4 ENSMUSG00000052426 ENSMUST00000064271 Gm9877 pseudogene Interval_149026 chr7 92319152 92319404 + 0 NA intron (ENSMUSG00000052572.19, intron 13 of 21) protein_coding-intron (ENSMUSG00000052572.19, intron 14 of 22) -88906 ENSMUSG00000109574.1 ENSMUSG00000109574 ENSMUST00000207479 B230206I08Rik TEC Interval_12551 chr1 195204856 195205529 + 0 NA Intergenic Intergenic 17574 ENSMUSG00000102236.1 ENSMUSG00000102236 ENSMUST00000192752 Gm37887 TEC Interval_83651 chr19 3478789 3479861 + 0 NA intron (ENSMUSG00000024908.15, intron 1 of 7) protein_coding-intron (ENSMUSG00000024908.15, intron 14 of 22) -6765 ENSMUSG00000114315.1 ENSMUSG00000114315 ENSMUST00000224419 Gm48696 antisense Interval_12763 chr10 5052511 5052782 + 0 NA intron (ENSMUSG00000096054.3, intron 133 of 145) protein_coding-intron (ENSMUSG00000096054.3, intron 5 of 16) -16190 ENSMUSG00000093189.1 ENSMUSG00000093189 ENSMUST00000175448 Gm25694 ribozyme Interval_124662 chr5 52929489 52930272 + 0 NA Intergenic Intergenic -10671 ENSMUSG00000105054.1 ENSMUSG00000105054 ENSMUST00000196038 Gm43664 processed_pseudogene Interval_141127 chr6 125150615 125151214 + 0 NA exon (ENSMUSG00000038271.17, exon 3 of 7) protein_coding-exon (ENSMUSG00000038271.17, exon 3 of 7) 1386 ENSMUSG00000038271.17 ENSMUSG00000038271 ENSMUST00000150474 Iffo1 protein_coding Interval_140079 chr6 113887031 113887338 + 0 NA intron (ENSMUSG00000030302.16, intron 3 of 3) protein_coding-intron (ENSMUSG00000030302.16, intron 1 of 19) 4355 ENSMUSG00000030302.16 ENSMUSG00000030302 ENSMUST00000154738 Atp2b2 protein_coding Interval_136513 chr6 55082046 55082962 + 0 NA Intergenic Intergenic 34441 ENSMUSG00000029777.10 ENSMUSG00000029777 ENSMUST00000203334 Gars protein_coding Interval_146438 chr7 45896356 45898176 + 0 NA promoter-TSS (ENSMUSG00000040231.16) protein_coding-promoter-TSS (ENSMUSG00000040231.16) -567 ENSMUSG00000040231.16 ENSMUSG00000040231 ENSMUST00000120299 Syngr4 protein_coding Interval_144884 chr7 28752614 28753769 + 0 NA intron (ENSMUSG00000070699.5, intron 15 of 15) protein_coding-intron (ENSMUSG00000070699.5, intron 15 of 15) -2983 ENSMUSG00000096257.2 ENSMUSG00000096257 ENSMUST00000178767 Ccer2 protein_coding Interval_34848 chr12 12680308 12681472 + 0 NA Intergenic Intergenic 1728 ENSMUSG00000098314.1 ENSMUSG00000098314 ENSMUST00000184748 Gm27952 rRNA Interval_61595 chr15 82856901 82857253 + 0 NA TTS (ENSMUSG00000041852.15) protein_coding-TTS (ENSMUSG00000041852.15) -42003 ENSMUSG00000100199.1 ENSMUSG00000100199 ENSMUST00000186291 Gm20324 antisense Interval_80551 chr18 43861146 43861439 + 0 NA intron (ENSMUSG00000117902.1, intron 2 of 3) lincRNA-intron (ENSMUSG00000117902.1, intron 2 of 3) -10043 ENSMUSG00000118043.1 ENSMUSG00000118043 ENSMUST00000237193 Gm50206 TEC Interval_173890 chrX 107402726 107404091 + 0 NA promoter-TSS (ENSMUSG00000031239.5) protein_coding-promoter-TSS (ENSMUSG00000031239.5) -32 ENSMUSG00000031239.5 ENSMUSG00000031239 ENSMUST00000033591 Itm2a protein_coding Interval_38388 chr12 78536465 78536718 + 0 NA intron (ENSMUSG00000047454.12, intron 10 of 23) protein_coding-intron (ENSMUSG00000047454.12, intron 10 of 23) 94996 ENSMUSG00000112391.1 ENSMUSG00000112391 ENSMUST00000218041 Gm48230 TEC Interval_153456 chr7 144906936 144909737 + 0 NA intron (ENSMUSG00000108977.1, intron 1 of 2) antisense-intron (ENSMUSG00000108977.1, intron 1 of 2) 1749 ENSMUSG00000108977.1 ENSMUSG00000108977 ENSMUST00000208466 Gm39119 antisense Interval_45231 chr13 53355823 53357495 + 0 NA intron (ENSMUSG00000021468.8, intron 6 of 14) protein_coding-intron (ENSMUSG00000021468.8, intron 6 of 14) 20706 ENSMUSG00000021468.8 ENSMUSG00000021468 ENSMUST00000221709 Sptlc1 protein_coding Interval_63490 chr15 101423855 101425165 + 0 NA intron (ENSMUSG00000023039.17, intron 6 of 7) protein_coding-intron (ENSMUSG00000023039.17, intron 7 of 8) -12199 ENSMUSG00000116116.1 ENSMUSG00000116116 ENSMUST00000231016 Gm671 antisense Interval_19787 chr10 108810946 108811189 + 0 NA intron (ENSMUSG00000035864.14, intron 3 of 7) protein_coding-intron (ENSMUSG00000035864.14, intron 3 of 10) 32756 ENSMUSG00000111910.1 ENSMUSG00000111910 ENSMUST00000219164 Gm47472 TEC Interval_23927 chr11 28422676 28423037 + 0 NA intron (ENSMUSG00000032878.16, intron 1 of 4) protein_coding-intron (ENSMUSG00000032878.16, intron 3 of 3) 11254 ENSMUSG00000032878.16 ENSMUSG00000032878 ENSMUST00000109501 Ccdc85a protein_coding Interval_76256 chr17 78560943 78561137 + 0 NA intron (ENSMUSG00000024076.10, intron 3 of 13) protein_coding-intron (ENSMUSG00000024076.10, intron 3 of 13) -12888 ENSMUSG00000024076.10 ENSMUSG00000024076 ENSMUST00000232864 Vit protein_coding Interval_141179 chr6 125442440 125443249 + 0 NA Intergenic Intergenic 20180 ENSMUSG00000030342.8 ENSMUSG00000030342 ENSMUST00000140024 Cd9 protein_coding Interval_110946 chr4 10723511 10723745 + 0 NA intron (ENSMUSG00000086080.7, intron 1 of 3) lincRNA-intron (ENSMUSG00000086080.7, intron 1 of 3) 74183 ENSMUSG00000086080.7 ENSMUSG00000086080 ENSMUST00000141312 1700123O12Rik lincRNA Interval_144838 chr7 28546222 28547383 + 0 NA exon (ENSMUSG00000047586.4, exon 1 of 6) protein_coding-exon (ENSMUSG00000047586.4, exon 1 of 6) 452 ENSMUSG00000047586.4 ENSMUSG00000047586 ENSMUST00000057974 Nccrp1 protein_coding Interval_136903 chr6 63819360 63819834 + 0 NA intron (ENSMUSG00000071424.10, intron 2 of 8) protein_coding-intron (ENSMUSG00000071424.10, intron 2 of 15) -35530 ENSMUSG00000108068.1 ENSMUSG00000108068 ENSMUST00000204208 Gm44075 processed_pseudogene Interval_151410 chr7 122158232 122160073 + 0 NA promoter-TSS (ENSMUSG00000030867.7) protein_coding-promoter-TSS (ENSMUSG00000030867.7) 249 ENSMUSG00000086942.1 ENSMUSG00000086942 ENSMUST00000132811 Gm15489 antisense Interval_57586 chr15 12623572 12623864 + 0 NA intron (ENSMUSG00000022197.16, intron 2 of 4) protein_coding-intron (ENSMUSG00000022197.16, intron 2 of 4) 11628 ENSMUSG00000103130.1 ENSMUSG00000103130 ENSMUST00000191701 F830212C03Rik TEC Interval_149510 chr7 99236771 99239121 + 0 NA intron (ENSMUSG00000052396.7, intron 1 of 2) protein_coding-intron (ENSMUSG00000052396.7, intron 1 of 5) 648 ENSMUSG00000052396.7 ENSMUSG00000052396 ENSMUST00000132343 Mogat2 protein_coding Interval_82581 chr18 75276202 75276676 + 0 NA intron (ENSMUSG00000035765.10, intron 16 of 16) protein_coding-intron (ENSMUSG00000035765.10, intron 16 of 16) 20878 ENSMUSG00000102047.1 ENSMUSG00000102047 ENSMUST00000186356 2010010A06Rik transcribed_processed_pseudogene Interval_165269 chr9 45941261 45942946 + 0 NA promoter-TSS (ENSMUSG00000034908.16) protein_coding-promoter-TSS (ENSMUSG00000034908.16) -2513 ENSMUSG00000098327.1 ENSMUSG00000098327 ENSMUST00000184840 Mir7087 miRNA Interval_41868 chr13 3676685 3676973 + 0 NA Intergenic Intergenic 28292 ENSMUSG00000088475.1 ENSMUSG00000088475 ENSMUST00000157850 Gm23084 rRNA Interval_150579 chr7 112616401 112616978 + 0 NA intron (ENSMUSG00000085945.3, intron 3 of 3) bidirectional_promoter_lncRNA-intron (ENSMUSG00000085945.3, intron 3 of 3) 1536 ENSMUSG00000093002.1 ENSMUSG00000093002 ENSMUST00000175261 Gm24154 snoRNA Interval_35032 chr12 16770720 16771229 + 0 NA intron (ENSMUSG00000036523.16, intron 1 of 34) protein_coding-intron (ENSMUSG00000036523.16, intron 1 of 3) -3751 ENSMUSG00000105567.1 ENSMUSG00000105567 ENSMUST00000199946 Gm44305 miRNA Interval_155599 chr8 34987918 34988132 + 0 NA Intergenic Intergenic -8151 ENSMUSG00000109717.1 ENSMUSG00000109717 ENSMUST00000209512 Gm34368 lincRNA Interval_152147 chr7 130143198 130143603 + 0 NA Intergenic Intergenic 108306 ENSMUSG00000065763.1 ENSMUSG00000065763 ENSMUST00000083829 Gm23847 snRNA Interval_129673 chr5 121650469 121650690 + 0 NA intron (ENSMUSG00000029456.12, intron 3 of 16) protein_coding-intron (ENSMUSG00000029456.12, intron 3 of 20) -17800 ENSMUSG00000029456.12 ENSMUSG00000029456 ENSMUST00000137231 Acad10 protein_coding Interval_60758 chr15 76578863 76580579 + 0 NA exon (ENSMUSG00000116238.1, exon 1 of 1) TEC-exon (ENSMUSG00000116238.1, exon 1 of 1) 1896 ENSMUSG00000116238.1 ENSMUSG00000116238 ENSMUST00000230810 Gm49413 TEC Interval_38276 chr12 76867532 76868237 + 0 NA intron (ENSMUSG00000033373.16, intron 4 of 13) protein_coding-intron (ENSMUSG00000033373.16, intron 2 of 11) -19174 ENSMUSG00000033373.16 ENSMUSG00000033373 ENSMUST00000130605 Fntb protein_coding Interval_171100 chr9 114533640 114534244 + 0 NA intron (ENSMUSG00000079259.2, intron 1 of 3) protein_coding-intron (ENSMUSG00000079259.2, intron 1 of 3) 18245 ENSMUSG00000097821.2 ENSMUSG00000097821 ENSMUST00000238379 C130032M10Rik antisense Interval_106929 chr3 102019297 102019667 + 0 NA Intergenic Intergenic 9327 ENSMUSG00000048540.8 ENSMUSG00000048540 ENSMUST00000198675 Nhlh2 protein_coding Interval_68757 chr16 85608073 85608259 + 0 NA Intergenic Intergenic -36086 ENSMUSG00000116972.1 ENSMUSG00000116972 ENSMUST00000231765 Gm6278 processed_pseudogene Interval_59852 chr15 59796850 59797642 + 0 NA Intergenic Intergenic -2287 ENSMUSG00000115426.1 ENSMUSG00000115426 ENSMUST00000228865 Gm19510 lincRNA Interval_101287 chr2 180192139 180192330 + 0 NA exon (ENSMUSG00000015647.9, exon 34 of 79) protein_coding-exon (ENSMUSG00000015647.9, exon 34 of 79) -12411 ENSMUSG00000098735.1 ENSMUSG00000098735 ENSMUST00000185089 Mir7005 miRNA Interval_144843 chr7 28562204 28562418 + 0 NA intron (ENSMUSG00000030602.13, intron 7 of 9) protein_coding-intron (ENSMUSG00000030602.13, intron 5 of 7) -1327 ENSMUSG00000098558.1 ENSMUSG00000098558 ENSMUST00000183983 Mir7049 miRNA Interval_15599 chr10 52240204 52240469 + 0 NA intron (ENSMUSG00000019891.15, intron 1 of 9) protein_coding-intron (ENSMUSG00000019891.15, intron 1 of 10) 6699 ENSMUSG00000019891.15 ENSMUSG00000019891 ENSMUST00000218582 Dcbld1 protein_coding Interval_106808 chr3 101003262 101003829 + 0 NA exon (ENSMUSG00000086564.9, exon 8 of 9) protein_coding-exon (ENSMUSG00000086564.9, exon 8 of 9) 18631 ENSMUSG00000086564.9 ENSMUSG00000086564 ENSMUST00000167086 Cd101 protein_coding Interval_170135 chr9 105405415 105405634 + 0 NA TTS (ENSMUSG00000032567.16) protein_coding-TTS (ENSMUSG00000032567.16) 2128 ENSMUSG00000032567.16 ENSMUSG00000032567 ENSMUST00000190934 Aste1 protein_coding Interval_123797 chr5 35582378 35583620 + 0 NA promoter-TSS (ENSMUSG00000029098.17) protein_coding-promoter-TSS (ENSMUSG00000029098.17) -80 ENSMUSG00000029098.17 ENSMUSG00000029098 ENSMUST00000201659 Acox3 protein_coding Interval_105748 chr3 89126780 89127179 + 0 NA Intergenic Intergenic -9195 ENSMUSG00000041237.12 ENSMUSG00000041237 ENSMUST00000148097 Pklr protein_coding Interval_154690 chr8 22621461 22621784 + 0 NA Intergenic Intergenic -2421 ENSMUSG00000031535.7 ENSMUSG00000031535 ENSMUST00000033936 Dkk4 protein_coding Interval_166082 chr9 56494674 56495078 + 0 NA exon (ENSMUSG00000032329.4, exon 10 of 10) protein_coding-exon (ENSMUSG00000032329.4, exon 10 of 10) 11785 ENSMUSG00000111343.1 ENSMUSG00000111343 ENSMUST00000216940 Gm47175 TEC Interval_109467 chr3 142712284 142712767 + 0 NA intron (ENSMUSG00000040213.13, intron 2 of 13) protein_coding-intron (ENSMUSG00000040213.13, intron 2 of 13) 11439 ENSMUSG00000040213.13 ENSMUSG00000040213 ENSMUST00000128096 Kyat3 protein_coding Interval_160658 chr8 111379420 111379792 + 0 NA intron (ENSMUSG00000033579.16, intron 1 of 5) protein_coding-intron (ENSMUSG00000033579.16, intron 1 of 6) 14212 ENSMUSG00000033579.16 ENSMUSG00000033579 ENSMUST00000162463 Fa2h protein_coding Interval_155972 chr8 41338737 41338950 + 0 NA Intergenic Intergenic 35930 ENSMUSG00000031591.14 ENSMUSG00000031591 ENSMUST00000143057 Asah1 protein_coding Interval_138607 chr6 90383852 90384910 + 0 NA TTS (ENSMUSG00000034430.16) protein_coding-TTS (ENSMUSG00000034430.16) -2426 ENSMUSG00000108181.1 ENSMUSG00000108181 ENSMUST00000203368 C030015A19Rik TEC Interval_112342 chr4 40713881 40715130 + 0 NA Intergenic Intergenic 2486 ENSMUSG00000082008.1 ENSMUSG00000082008 ENSMUST00000117897 Gm12390 processed_pseudogene Interval_145334 chr7 33903152 33904990 + 0 NA promoter-TSS (ENSMUSG00000101203.1) unprocessed_pseudogene-promoter-TSS (ENSMUSG00000101203.1) 46 ENSMUSG00000101203.1 ENSMUSG00000101203 ENSMUST00000187527 Gm28615 unprocessed_pseudogene Interval_47666 chr13 90950468 90950719 + 0 NA intron (ENSMUSG00000021619.6, intron 4 of 6) protein_coding-intron (ENSMUSG00000021619.6, intron 5 of 7) 27376 ENSMUSG00000049517.8 ENSMUSG00000049517 ENSMUST00000224430 Rps23 protein_coding Interval_11330 chr1 180986867 180988587 + 0 NA intron (ENSMUSG00000038776.13, intron 4 of 4) protein_coding-intron (ENSMUSG00000038776.13, intron 4 of 4) 8443 ENSMUSG00000038776.13 ENSMUSG00000038776 ENSMUST00000147585 Ephx1 protein_coding Interval_63733 chr15 103133757 103135189 + 0 NA intron (ENSMUSG00000097003.1, intron 3 of 6) lincRNA-intron (ENSMUSG00000097003.1, intron 3 of 6) -1408 ENSMUSG00000116066.1 ENSMUSG00000116066 ENSMUST00000230071 Gm49477 lincRNA Interval_150512 chr7 111616454 111616672 + 0 NA intron (ENSMUSG00000038296.14, intron 1 of 10) protein_coding-intron (ENSMUSG00000038296.14, intron 1 of 10) 163414 ENSMUSG00000038296.14 ENSMUSG00000038296 ENSMUST00000106663 Galnt18 protein_coding Interval_100998 chr2 174063230 174063828 + 0 NA Intergenic Intergenic -13537 ENSMUSG00000027522.15 ENSMUSG00000027522 ENSMUST00000156054 Stx16 protein_coding Interval_100548 chr2 170064702 170065144 + 0 NA intron (ENSMUSG00000047907.11, intron 1 of 1) protein_coding-intron (ENSMUSG00000047907.11, intron 1 of 1) 83180 ENSMUSG00000052056.14 ENSMUSG00000052056 ENSMUST00000149318 Zfp217 protein_coding Interval_14008 chr10 25426329 25428235 + 0 NA intron (ENSMUSG00000019978.16, intron 1 of 10) protein_coding-intron (ENSMUSG00000019978.16, intron 1 of 19) -11097 ENSMUSG00000112445.1 ENSMUSG00000112445 ENSMUST00000219193 Gm47830 processed_pseudogene Interval_50475 chr14 13914165 13915522 + 0 NA promoter-TSS (ENSMUSG00000084902.2) protein_coding-promoter-TSS (ENSMUSG00000084902.2) -365 ENSMUSG00000084902.2 ENSMUSG00000084902 ENSMUST00000144914 Gm281 protein_coding Interval_18490 chr10 86697280 86697504 + 0 NA intron (ENSMUSG00000020048.13, intron 3 of 12) protein_coding-intron (ENSMUSG00000020048.13, intron 7 of 17) -4297 ENSMUSG00000084899.1 ENSMUSG00000084899 ENSMUST00000152600 Gm15344 processed_transcript Interval_20405 chr10 117375981 117377224 + 0 NA intron (ENSMUSG00000055531.12, intron 2 of 3) protein_coding-intron (ENSMUSG00000055531.12, intron 1 of 9) 326 ENSMUSG00000055531.12 ENSMUSG00000055531 ENSMUST00000175924 Cpsf6 protein_coding Interval_139681 chr6 106820626 106821059 + 0 NA Intergenic Intergenic -20765 ENSMUSG00000005362.14 ENSMUSG00000005362 ENSMUST00000204230 Crbn protein_coding Interval_173066 chrX 70326203 70328255 + 0 NA Intergenic Intergenic 33862 ENSMUSG00000035847.15 ENSMUSG00000035847 ENSMUST00000130519 Ids protein_coding Interval_155601 chr8 35005134 35006068 + 0 NA Intergenic Intergenic -25727 ENSMUSG00000109717.1 ENSMUSG00000109717 ENSMUST00000209512 Gm34368 lincRNA Interval_22971 chr11 18172842 18173066 + 0 NA Intergenic Intergenic 33990 ENSMUSG00000080826.1 ENSMUSG00000080826 ENSMUST00000121258 Gm12019 processed_pseudogene Interval_131254 chr5 136019919 136020193 + 0 NA exon (ENSMUSG00000004947.15, exon 1 of 6) protein_coding-exon (ENSMUSG00000004947.15, exon 1 of 6) -18440 ENSMUSG00000042985.7 ENSMUSG00000042985 ENSMUST00000062606 Upk3b protein_coding Interval_117160 chr4 120138470 120138693 + 0 NA TTS (ENSMUSG00000028634.17) protein_coding-TTS (ENSMUSG00000028634.17) -22625 ENSMUSG00000028635.7 ENSMUSG00000028635 ENSMUST00000030384 Edn2 protein_coding Interval_170013 chr9 103641552 103642363 + 0 NA intron (ENSMUSG00000042757.16, intron 2 of 3) protein_coding-intron (ENSMUSG00000042757.16, intron 1 of 4) -41793 ENSMUSG00000102441.1 ENSMUSG00000102441 ENSMUST00000195052 Gm38032 TEC Interval_67441 chr16 48654697 48656040 + 0 NA Intergenic Intergenic 95080 ENSMUSG00000116640.1 ENSMUSG00000116640 ENSMUST00000231404 Gm8670 processed_pseudogene Interval_154899 chr8 24935568 24935866 + 0 NA intron (ENSMUSG00000037437.18, intron 2 of 8) protein_coding-intron (ENSMUSG00000037437.18, intron 2 of 19) -2583 ENSMUSG00000088736.1 ENSMUSG00000088736 ENSMUST00000158111 Gm23898 snRNA Interval_105096 chr3 81148985 81150600 + 0 NA intron (ENSMUSG00000028019.9, intron 3 of 5) protein_coding-intron (ENSMUSG00000028019.9, intron 2 of 5) -109355 ENSMUSG00000085106.1 ENSMUSG00000085106 ENSMUST00000146657 Gm16000 antisense Interval_50277 chr14 11589906 11591115 + 0 NA intron (ENSMUSG00000021745.14, intron 1 of 3) protein_coding-intron (ENSMUSG00000021745.14, intron 1 of 29) -69740 ENSMUSG00000114849.1 ENSMUSG00000114849 ENSMUST00000224543 Gm48595 lincRNA Interval_12212 chr1 190868727 190870119 + 0 NA intron (ENSMUSG00000089872.10, intron 3 of 8) protein_coding-intron (ENSMUSG00000089872.10, intron 6 of 14) 30294 ENSMUSG00000089872.10 ENSMUSG00000089872 ENSMUST00000159066 Rps6kc1 protein_coding Interval_173535 chrX 98953951 98954179 + 0 NA Intergenic Intergenic 8413 ENSMUSG00000082549.1 ENSMUSG00000082549 ENSMUST00000122291 Gm14813 processed_pseudogene Interval_20935 chr10 122391117 122392303 + 0 NA intron (ENSMUSG00000112774.1, intron 1 of 5) lincRNA-intron (ENSMUSG00000112774.1, intron 1 of 5) 4818 ENSMUSG00000112774.1 ENSMUSG00000112774 ENSMUST00000218971 Gm36041 lincRNA Interval_64310 chr16 10394708 10395747 + 0 NA exon (ENSMUSG00000039179.13, exon 1 of 7) protein_coding-exon (ENSMUSG00000039179.13, exon 1 of 7) 221 ENSMUSG00000039179.13 ENSMUSG00000039179 ENSMUST00000115831 Tekt5 protein_coding Interval_56890 chr14 122875908 122877091 + 0 NA intron (ENSMUSG00000041650.15, intron 1 of 3) protein_coding-intron (ENSMUSG00000041650.15, intron 21 of 23) -36576 ENSMUSG00000075463.3 ENSMUSG00000075463 ENSMUST00000162218 4930594M22Rik processed_transcript Interval_114645 chr4 83428741 83429500 + 0 NA intron (ENSMUSG00000028483.13, intron 3 of 11) protein_coding-intron (ENSMUSG00000028483.13, intron 3 of 8) -24834 ENSMUSG00000028483.13 ENSMUSG00000028483 ENSMUST00000130676 Snapc3 protein_coding Interval_26581 chr11 59038257 59038859 + 0 NA exon (ENSMUSG00000061462.18, exon 65 of 90) protein_coding-exon (ENSMUSG00000061462.18, exon 65 of 90) 35648 ENSMUSG00000072902.4 ENSMUSG00000072902 ENSMUST00000101162 Gm10435 antisense Interval_43623 chr13 34179754 34179946 + 0 NA exon (ENSMUSG00000038267.15, exon 11 of 11) protein_coding-exon (ENSMUSG00000038267.15, exon 11 of 11) 16886 ENSMUSG00000071451.10 ENSMUSG00000071451 ENSMUST00000147632 Psmg4 protein_coding Interval_50030 chr13 119837881 119838378 + 0 NA intron (ENSMUSG00000095514.2, intron 1 of 1) protein_coding-intron (ENSMUSG00000095514.2, intron 1 of 1) -7219 ENSMUSG00000095514.2 ENSMUSG00000095514 ENSMUST00000195797 D13Ertd608e protein_coding Interval_38817 chr12 82616433 82617875 + 0 NA promoter-TSS (ENSMUSG00000021219.16) protein_coding-promoter-TSS (ENSMUSG00000021219.16) -345 ENSMUSG00000021219.16 ENSMUSG00000021219 ENSMUST00000201512 Rgs6 protein_coding Interval_63939 chr16 4663948 4664153 + 0 NA intron (ENSMUSG00000039637.15, intron 6 of 24) protein_coding-intron (ENSMUSG00000039637.15, intron 6 of 27) -20065 ENSMUSG00000004069.17 ENSMUSG00000004069 ENSMUST00000229529 Dnaja3 protein_coding Interval_136721 chr6 58579198 58579452 + 0 NA Intergenic Intergenic -57515 ENSMUSG00000107960.1 ENSMUSG00000107960 ENSMUST00000204999 Gm35077 lincRNA Interval_100395 chr2 168790937 168791969 + 0 NA Intergenic Intergenic 25310 ENSMUSG00000085322.2 ENSMUSG00000085322 ENSMUST00000145105 Gm14261 antisense Interval_22654 chr11 12540527 12540759 + 0 NA Intergenic Intergenic -128499 ENSMUSG00000020173.17 ENSMUSG00000020173 ENSMUST00000146067 Cobl protein_coding Interval_91415 chr2 38646067 38646336 + 0 NA Intergenic Intergenic -2281 ENSMUSG00000026750.6 ENSMUSG00000026750 ENSMUST00000151981 Psmb7 protein_coding Interval_73302 chr17 36060640 36061222 + 0 NA Intergenic Intergenic -2560 ENSMUSG00000079492.2 ENSMUSG00000079492 ENSMUST00000113742 Gm11127 protein_coding Interval_153699 chr8 4726999 4727203 + 0 NA Intergenic Intergenic -4265 ENSMUSG00000108962.1 ENSMUSG00000108962 ENSMUST00000209127 Gm44959 unprocessed_pseudogene Interval_68825 chr16 87415128 87415355 + 0 NA intron (ENSMUSG00000052299.9, intron 10 of 11) protein_coding-intron (ENSMUSG00000052299.9, intron 10 of 29) 3803 ENSMUSG00000065647.1 ENSMUSG00000065647 ENSMUST00000083713 Gm25896 snoRNA Interval_6751 chr1 119189375 119190062 + 0 NA Intergenic Intergenic 32132 ENSMUSG00000096939.1 ENSMUSG00000096939 ENSMUST00000181691 Gm8321 processed_pseudogene Interval_61026 chr15 78842393 78843122 + 0 NA intron (ENSMUSG00000049521.2, intron 1 of 2) protein_coding-intron (ENSMUSG00000049521.2, intron 1 of 2) 133 ENSMUSG00000049521.2 ENSMUSG00000049521 ENSMUST00000059619 Cdc42ep1 protein_coding Interval_142235 chr6 139589193 139589946 + 0 NA intron (ENSMUSG00000030228.18, intron 2 of 6) protein_coding-intron (ENSMUSG00000030228.18, intron 1 of 1) -12364 ENSMUSG00000108147.1 ENSMUSG00000108147 ENSMUST00000203475 4930443G03Rik TEC Interval_140934 chr6 122828056 122828503 + 0 NA exon (ENSMUSG00000003154.15, exon 2 of 11) protein_coding-exon (ENSMUSG00000003154.15, exon 2 of 11) 1604 ENSMUSG00000003154.15 ENSMUSG00000003154 ENSMUST00000203075 Foxj2 protein_coding Interval_15739 chr10 55475180 55475426 + 0 NA Intergenic Intergenic 350941 ENSMUSG00000112755.1 ENSMUSG00000112755 ENSMUST00000219650 Gm46190 processed_pseudogene Interval_43393 chr13 30002881 30003535 + 0 NA Intergenic Intergenic -18817 ENSMUSG00000016477.18 ENSMUSG00000016477 ENSMUST00000146092 E2f3 protein_coding Interval_88868 chr2 11870280 11870614 + 0 NA Intergenic Intergenic -29635 ENSMUSG00000103542.1 ENSMUSG00000103542 ENSMUST00000193884 Gm34768 unprocessed_pseudogene Interval_10906 chr1 176853054 176854361 + 0 NA TTS (ENSMUSG00000103584.1) unprocessed_pseudogene-TTS (ENSMUSG00000103584.1) 852 ENSMUSG00000103584.1 ENSMUSG00000103584 ENSMUST00000193938 Gm38053 unprocessed_pseudogene Interval_141714 chr6 133970234 133972534 + 0 NA Intergenic Intergenic -38975 ENSMUSG00000107771.1 ENSMUSG00000107771 ENSMUST00000203939 Gm8956 processed_pseudogene Interval_170837 chr9 111070274 111070935 + 0 NA TTS (ENSMUSG00000097529.1) processed_pseudogene-TTS (ENSMUSG00000097529.1) 929 ENSMUSG00000097529.1 ENSMUSG00000097529 ENSMUST00000180929 Rp31-ps19 processed_pseudogene Interval_81822 chr18 65012838 65013720 + 0 NA intron (ENSMUSG00000024589.18, intron 2 of 4) protein_coding-intron (ENSMUSG00000024589.18, intron 2 of 29) -12104 ENSMUSG00000117895.1 ENSMUSG00000117895 ENSMUST00000237218 Gm50368 antisense Interval_65599 chr16 23953409 23954628 + 0 NA Intergenic Intergenic 18362 ENSMUSG00000022508.5 ENSMUSG00000022508 ENSMUST00000135352 Bcl6 protein_coding Interval_60024 chr15 64043621 64044717 + 0 NA intron (ENSMUSG00000022378.14, intron 1 of 12) protein_coding-intron (ENSMUSG00000022378.14, intron 1 of 11) 16309 ENSMUSG00000022378.14 ENSMUSG00000022378 ENSMUST00000226129 Fam49b protein_coding Interval_65120 chr16 19886238 19886847 + 0 NA Intergenic Intergenic -2268 ENSMUSG00000075330.4 ENSMUSG00000075330 ENSMUST00000231564 A930003A15Rik protein_coding Interval_171452 chr9 118444785 118445541 + 0 NA Intergenic Intergenic 15327 ENSMUSG00000111843.1 ENSMUSG00000111843 ENSMUST00000213675 4933432G23Rik lincRNA Interval_171226 chr9 115361397 115362908 + 0 NA Intergenic Intergenic -19667 ENSMUSG00000080409.1 ENSMUSG00000080409 ENSMUST00000116759 Mir467h miRNA Interval_130437 chr5 127620530 127621101 + 0 NA intron (ENSMUSG00000029416.17, intron 1 of 1) protein_coding-intron (ENSMUSG00000029416.17, intron 1 of 5) 3823 ENSMUSG00000105362.1 ENSMUSG00000105362 ENSMUST00000196415 Gm43474 TEC Interval_100697 chr2 171746680 171747745 + 0 NA Intergenic Intergenic 214919 ENSMUSG00000086823.7 ENSMUSG00000086823 ENSMUST00000125465 1700028P15Rik processed_transcript Interval_3677 chr1 60661805 60662559 + 0 NA Intergenic Intergenic -38690 ENSMUSG00000084151.1 ENSMUSG00000084151 ENSMUST00000118030 Gm11577 processed_pseudogene Interval_113069 chr4 47480540 47480763 + 0 NA exon (ENSMUSG00000053317.11, exon 2 of 2) protein_coding-exon (ENSMUSG00000053317.11, exon 2 of 2) 5887 ENSMUSG00000053317.11 ENSMUSG00000053317 ENSMUST00000136685 Sec61b protein_coding Interval_149566 chr7 99625461 99627577 + 0 NA exon (ENSMUSG00000096606.2, exon 1 of 1) protein_coding-exon (ENSMUSG00000096606.2, exon 1 of 1) 583 ENSMUSG00000097974.1 ENSMUSG00000097974 ENSMUST00000182342 Gm10605 lincRNA Interval_38403 chr12 78759189 78759501 + 0 NA intron (ENSMUSG00000021112.9, intron 1 of 14) protein_coding-intron (ENSMUSG00000021112.9, intron 1 of 14) -6557 ENSMUSG00000088822.1 ENSMUSG00000088822 ENSMUST00000158197 Gm25225 snRNA Interval_174630 chrX 160510707 160511156 + 0 NA intron (ENSMUSG00000031295.13, intron 1 of 3) protein_coding-intron (ENSMUSG00000031295.13, intron 1 of 32) -11061 ENSMUSG00000087505.1 ENSMUSG00000087505 ENSMUST00000125700 Gm15241 antisense Interval_131780 chr5 139824475 139824989 + 0 NA exon (ENSMUSG00000029551.13, exon 1 of 1) protein_coding-exon (ENSMUSG00000029551.13, exon 1 of 1) 1675 ENSMUSG00000098140.1 ENSMUSG00000098140 ENSMUST00000182839 Gm26938 protein_coding Interval_56200 chr14 112133711 112134211 + 0 NA Intergenic Intergenic -102723 ENSMUSG00000115558.1 ENSMUSG00000115558 ENSMUST00000227711 Gm49000 TEC Interval_57728 chr15 17049032 17050005 + 0 NA intron (ENSMUSG00000115182.1, intron 2 of 2) lincRNA-intron (ENSMUSG00000115182.1, intron 2 of 2) 27421 ENSMUSG00000115182.1 ENSMUSG00000115182 ENSMUST00000227358 Gm49128 lincRNA Interval_150471 chr7 110945797 110946142 + 0 NA exon (ENSMUSG00000005611.15, exon 2 of 21) protein_coding-exon (ENSMUSG00000005611.15, exon 2 of 21) 36235 ENSMUSG00000005611.15 ENSMUSG00000005611 ENSMUST00000154466 Mrvi1 protein_coding Interval_37494 chr12 69356645 69357474 + 0 NA promoter-TSS (ENSMUSG00000020982.9) protein_coding-promoter-TSS (ENSMUSG00000020982.9) 79 ENSMUSG00000020982.9 ENSMUSG00000020982 ENSMUST00000222065 Nemf protein_coding Interval_55562 chr14 92290888 92291209 + 0 NA Intergenic Intergenic 57543 ENSMUSG00000115308.1 ENSMUSG00000115308 ENSMUST00000228682 Gm48944 processed_pseudogene Interval_172251 chrX 11956721 11957606 + 0 NA Intergenic Intergenic -27305 ENSMUSG00000081947.2 ENSMUSG00000081947 ENSMUST00000117924 Gm14512 processed_pseudogene Interval_123 GL456368.1 286 1862 + 0 NA NA NA NA NA Interval_50700 chr14 18342477 18342851 + 0 NA Intergenic Intergenic -10920 ENSMUSG00000021774.13 ENSMUSG00000021774 ENSMUST00000161580 Ube2e1 protein_coding Interval_165109 chr9 44618478 44618653 + 0 NA exon (ENSMUSG00000111264.1, exon 1 of 1) TEC-exon (ENSMUSG00000111264.1, exon 1 of 1) 312 ENSMUSG00000111264.1 ENSMUSG00000111264 ENSMUST00000215131 E030022I16Rik TEC Interval_82546 chr18 75046602 75047626 + 0 NA promoter-TSS (ENSMUSG00000035765.10) protein_coding-promoter-TSS (ENSMUSG00000035765.10) 23258 ENSMUSG00000098305.1 ENSMUSG00000098305 ENSMUST00000185185 Gm27781 rRNA Interval_68277 chr16 72194202 72196092 + 0 NA Intergenic Intergenic 39180 ENSMUSG00000116769.1 ENSMUSG00000116769 ENSMUST00000231977 8030451O07Rik lincRNA Interval_46367 chr13 64256972 64258527 + 0 NA intron (ENSMUSG00000097101.3, intron 1 of 2) protein_coding-intron (ENSMUSG00000033102.15, intron 1 of 13) -4365 ENSMUSG00000113603.1 ENSMUSG00000113603 ENSMUST00000221580 Gm47004 TEC Interval_141972 chr6 136229347 136229577 + 0 NA Intergenic Intergenic -51765 ENSMUSG00000087878.1 ENSMUSG00000087878 ENSMUST00000157253 Gm26105 snRNA Interval_162641 chr9 7176569 7177527 + 0 NA promoter-TSS (ENSMUSG00000047193.16) protein_coding-promoter-TSS (ENSMUSG00000047193.16) -26437 ENSMUSG00000032002.10 ENSMUSG00000032002 ENSMUST00000216770 Dcun1d5 protein_coding Interval_127075 chr5 100116343 100117030 + 0 NA intron (ENSMUSG00000050640.16, intron 1 of 5) protein_coding-intron (ENSMUSG00000050640.16, intron 1 of 7) 24789 ENSMUSG00000086259.7 ENSMUSG00000086259 ENSMUST00000154539 Tmem150cos antisense Interval_129301 chr5 118776036 118776839 + 0 NA Intergenic Intergenic 26050 ENSMUSG00000018076.12 ENSMUSG00000018076 ENSMUST00000202787 Med13l protein_coding Interval_162782 chr9 9061798 9062897 + 0 NA intron (ENSMUSG00000050730.17, intron 4 of 15) protein_coding-intron (ENSMUSG00000050730.17, intron 4 of 22) 90556 ENSMUSG00000078117.2 ENSMUSG00000078117 ENSMUST00000104915 Gm16485 TEC Interval_38765 chr12 82158025 82158301 + 0 NA Intergenic Intergenic 7695 ENSMUSG00000064714.1 ENSMUSG00000064714 ENSMUST00000082780 n-R5s62 rRNA Interval_139661 chr6 106315172 106316147 + 0 NA intron (ENSMUSG00000064293.14, intron 3 of 3) protein_coding-intron (ENSMUSG00000064293.14, intron 2 of 15) -339844 ENSMUSG00000064293.14 ENSMUSG00000064293 ENSMUST00000142626 Cntn4 protein_coding Interval_55454 chr14 87463811 87464845 + 0 NA intron (ENSMUSG00000022019.16, intron 3 of 13) protein_coding-intron (ENSMUSG00000022019.16, intron 3 of 13) -22638 ENSMUSG00000115484.1 ENSMUSG00000115484 ENSMUST00000227005 Gm33121 processed_pseudogene Interval_168708 chr9 86169596 86169996 + 0 NA Intergenic Intergenic 6219 ENSMUSG00000111418.1 ENSMUSG00000111418 ENSMUST00000216119 Gm18016 processed_pseudogene Interval_41207 chr12 111785178 111785570 + 0 NA intron (ENSMUSG00000021288.19, intron 10 of 15) protein_coding-intron (ENSMUSG00000021288.19, intron 10 of 15) 24608 ENSMUSG00000021287.12 ENSMUSG00000021287 ENSMUST00000133679 Xrcc3 protein_coding Interval_19374 chr10 98537219 98537790 + 0 NA promoter-TSS (ENSMUSG00000112874.1) lincRNA-promoter-TSS (ENSMUSG00000112874.1) 22 ENSMUSG00000112874.1 ENSMUSG00000112874 ENSMUST00000220028 Gm34297 lincRNA Interval_18229 chr10 83937381 83937800 + 0 NA Intergenic Intergenic 35738 ENSMUSG00000112133.1 ENSMUSG00000112133 ENSMUST00000217741 Gm47247 processed_pseudogene Interval_535 chr1 7065515 7065888 + 0 NA Intergenic Intergenic 29786 ENSMUSG00000103629.1 ENSMUSG00000103629 ENSMUST00000195648 Gm5694 processed_pseudogene Interval_64322 chr16 10489158 10490481 + 0 NA promoter-TSS (ENSMUSG00000022504.10) protein_coding-promoter-TSS (ENSMUSG00000022504.10) 73 ENSMUSG00000022504.10 ENSMUSG00000022504 ENSMUST00000230392 Ciita protein_coding Interval_168277 chr9 78378158 78378585 + 0 NA exon (ENSMUSG00000032346.7, exon 1 of 3) protein_coding-exon (ENSMUSG00000032346.7, exon 1 of 3) 354 ENSMUSG00000032346.7 ENSMUSG00000032346 ENSMUST00000034900 Ooep protein_coding Interval_128237 chr5 111931886 111932286 + 0 NA Intergenic Intergenic 12149 ENSMUSG00000106060.1 ENSMUSG00000106060 ENSMUST00000197648 Gm42488 lincRNA Interval_174754 chrX 165466279 165467129 + 0 NA Intergenic Intergenic -139311 ENSMUSG00000018589.8 ENSMUSG00000018589 ENSMUST00000058787 Glra2 protein_coding Interval_79499 chr18 32398562 32399165 + 0 NA intron (ENSMUSG00000024381.16, intron 1 of 13) protein_coding-intron (ENSMUSG00000024381.16, intron 1 of 18) -20585 ENSMUSG00000097413.2 ENSMUSG00000097413 ENSMUST00000234408 A830052D11Rik lincRNA Interval_20058 chr10 112882953 112884319 + 0 NA Intergenic Intergenic -44865 ENSMUSG00000097185.1 ENSMUSG00000097185 ENSMUST00000180464 Gm26596 TEC Interval_69560 chr16 94236796 94238718 + 0 NA intron (ENSMUSG00000040820.16, intron 5 of 10) protein_coding-intron (ENSMUSG00000040820.16, intron 4 of 9) 5590 ENSMUSG00000114993.1 ENSMUSG00000114993 ENSMUST00000227202 Gm6363 processed_pseudogene Interval_34490 chr12 4587517 4587986 + 0 NA Intergenic Intergenic -5257 ENSMUSG00000020640.10 ENSMUSG00000020640 ENSMUST00000218211 Itsn2 protein_coding Interval_92729 chr2 64655632 64655934 + 0 NA Intergenic Intergenic -85143 ENSMUSG00000081065.1 ENSMUSG00000081065 ENSMUST00000120851 Gm13576 processed_pseudogene Interval_99 GL456221.1 134960 136072 + 0 NA NA NA NA NA Interval_123830 chr5 35806028 35806319 + 0 NA intron (ENSMUSG00000029095.17, intron 3 of 21) protein_coding-intron (ENSMUSG00000029095.17, intron 3 of 19) -51721 ENSMUSG00000029095.17 ENSMUSG00000029095 ENSMUST00000153529 Ablim2 protein_coding Interval_37838 chr12 72413802 72414042 + 0 NA Intergenic Intergenic -28113 ENSMUSG00000021090.16 ENSMUSG00000021090 ENSMUST00000221282 Lrrc9 protein_coding Interval_147600 chr7 68977046 68978215 + 0 NA Intergenic Intergenic -11774 ENSMUSG00000109524.1 ENSMUSG00000109524 ENSMUST00000207562 Gm44691 lincRNA Interval_96597 chr2 126151792 126152693 + 0 NA promoter-TSS (ENSMUSG00000027209.17) protein_coding-promoter-TSS (ENSMUSG00000027209.17) 101 ENSMUSG00000023330.12 ENSMUSG00000023330 ENSMUST00000110437 Dtwd1 protein_coding Interval_167893 chr9 73637870 73638370 + 0 NA intron (ENSMUSG00000062151.13, intron 18 of 32) protein_coding-intron (ENSMUSG00000062151.13, intron 17 of 31) 38572 ENSMUSG00000099064.1 ENSMUSG00000099064 ENSMUST00000185086 Gm27148 processed_pseudogene Interval_83775 chr19 4614670 4616191 + 0 NA promoter-TSS (ENSMUSG00000045045.7) protein_coding-promoter-TSS (ENSMUSG00000045045.7) 237 ENSMUSG00000045045.7 ENSMUSG00000045045 ENSMUST00000053597 Lrfn4 protein_coding Interval_137058 chr6 67036194 67037780 + 0 NA TTS (ENSMUSG00000036390.8) protein_coding-TTS (ENSMUSG00000036390.8) 377 ENSMUSG00000036390.8 ENSMUSG00000036390 ENSMUST00000155041 Gadd45a protein_coding Interval_29450 chr11 84073161 84073528 + 0 NA Intergenic Intergenic -4765 ENSMUSG00000018648.15 ENSMUSG00000018648 ENSMUST00000138208 Dusp14 protein_coding Interval_140131 chr6 114674399 114675138 + 0 NA intron (ENSMUSG00000030314.16, intron 3 of 16) protein_coding-intron (ENSMUSG00000030314.16, intron 3 of 18) -8516 ENSMUSG00000030314.16 ENSMUSG00000030314 ENSMUST00000182934 Atg7 protein_coding Interval_57525 chr15 12093181 12094064 + 0 NA Intergenic Intergenic -8425 ENSMUSG00000115441.1 ENSMUSG00000115441 ENSMUST00000227908 Gm34759 lincRNA Interval_97275 chr2 132858024 132858372 + 0 NA intron (ENSMUSG00000027357.16, intron 3 of 6) protein_coding-intron (ENSMUSG00000027357.16, intron 3 of 6) 10460 ENSMUSG00000027357.16 ENSMUSG00000027357 ENSMUST00000154160 Crls1 protein_coding Interval_163566 chr9 22239707 22240734 + 0 NA TTS (ENSMUSG00000057982.8) protein_coding-TTS (ENSMUSG00000057982.8) 11242 ENSMUSG00000111424.1 ENSMUSG00000111424 ENSMUST00000213592 Gm48478 TEC Interval_1321 chr1 20547976 20548167 + 0 NA intron (ENSMUSG00000043760.16, intron 26 of 66) protein_coding-intron (ENSMUSG00000043760.16, intron 26 of 66) 69993 ENSMUSG00000043760.16 ENSMUSG00000043760 ENSMUST00000128051 Pkhd1 protein_coding Interval_4158 chr1 71023843 71025034 + 0 NA Intergenic Intergenic 15592 ENSMUSG00000089965.1 ENSMUSG00000089965 ENSMUST00000159588 Gm16236 processed_pseudogene Interval_60277 chr15 72033695 72034664 + 0 NA promoter-TSS (ENSMUSG00000079022.10) protein_coding-promoter-TSS (ENSMUSG00000079022.10) -79780 ENSMUSG00000079022.10 ENSMUSG00000079022 ENSMUST00000162081 Col22a1 protein_coding Interval_16205 chr10 61423152 61423872 + 0 NA exon (ENSMUSG00000037171.6, exon 2 of 3) protein_coding-exon (ENSMUSG00000037171.6, exon 2 of 3) 5540 ENSMUSG00000037171.6 ENSMUSG00000037171 ENSMUST00000049339 Nodal protein_coding Interval_46789 chr13 70518049 70518254 + 0 NA Intergenic Intergenic -55129 ENSMUSG00000101051.6 ENSMUSG00000101051 ENSMUST00000189028 1700100L14Rik antisense Interval_149791 chr7 101533951 101534285 + 0 NA intron (ENSMUSG00000110301.1, intron 1 of 3) lincRNA-intron (ENSMUSG00000110301.1, intron 1 of 3) 4212 ENSMUSG00000110301.1 ENSMUSG00000110301 ENSMUST00000209330 Gm35363 lincRNA Interval_105581 chr3 87884703 87886248 + 0 NA exon (ENSMUSG00000004895.9, exon 1 of 7) protein_coding-exon (ENSMUSG00000004895.9, exon 1 of 7) 133 ENSMUSG00000004895.9 ENSMUSG00000004895 ENSMUST00000005015 Prcc protein_coding Interval_59135 chr15 44624870 44625303 + 0 NA intron (ENSMUSG00000022339.9, intron 2 of 3) protein_coding-intron (ENSMUSG00000022339.9, intron 2 of 6) 5657 ENSMUSG00000022339.9 ENSMUSG00000022339 ENSMUST00000022964 Ebag9 protein_coding Interval_129809 chr5 122478612 122479880 + 0 NA intron (ENSMUSG00000029467.15, intron 5 of 20) protein_coding-intron (ENSMUSG00000029467.15, intron 5 of 19) 5753 ENSMUSG00000105434.1 ENSMUSG00000105434 ENSMUST00000197944 Gm43359 TEC Interval_119938 chr4 141025072 141025824 + 0 NA exon (ENSMUSG00000040860.16, exon 25 of 35) protein_coding-exon (ENSMUSG00000040860.16, exon 25 of 35) 15030 ENSMUSG00000060572.17 ENSMUSG00000060572 ENSMUST00000071977 Mfap2 protein_coding Interval_150836 chr7 115408300 115408683 + 0 NA Intergenic Intergenic 236218 ENSMUSG00000099211.1 ENSMUSG00000099211 ENSMUST00000183778 Gm27684 miRNA Interval_108039 chr3 120898316 120898637 + 0 NA Intergenic Intergenic -11744 ENSMUSG00000098097.7 ENSMUSG00000098097 ENSMUST00000182099 6530403H02Rik lincRNA Interval_28115 chr11 72952771 72955360 + 0 NA TTS (ENSMUSG00000105756.1) miRNA-TTS (ENSMUSG00000105756.1) 958 ENSMUSG00000105756.1 ENSMUSG00000105756 ENSMUST00000198722 Gm44467 miRNA Interval_160778 chr8 112167065 112168356 + 0 NA Intergenic Intergenic 69256 ENSMUSG00000110435.1 ENSMUSG00000110435 ENSMUST00000212314 Gm3635 processed_pseudogene Interval_5193 chr1 86388895 86389919 + 0 NA promoter-TSS (ENSMUSG00000026237.6) protein_coding-promoter-TSS (ENSMUSG00000026237.6) 8783 ENSMUSG00000026237.6 ENSMUSG00000026237 ENSMUST00000212614 Nmur1 protein_coding Interval_127124 chr5 100440375 100440554 + 0 NA Intergenic Intergenic 10738 ENSMUSG00000106391.1 ENSMUSG00000106391 ENSMUST00000197921 Gm42690 TEC Interval_158394 chr8 83389568 83390590 + 0 NA exon (ENSMUSG00000002190.13, exon 1 of 15) protein_coding-exon (ENSMUSG00000002190.13, exon 1 of 15) 201 ENSMUSG00000002190.13 ENSMUSG00000002190 ENSMUST00000109831 Clgn protein_coding Interval_110486 chr3 159448444 159448752 + 0 NA Intergenic Intergenic -42820 ENSMUSG00000104864.1 ENSMUSG00000104864 ENSMUST00000197367 Gm43655 processed_pseudogene Interval_30040 chr11 88848301 88850248 + 0 NA intron (ENSMUSG00000018428.15, intron 1 of 10) protein_coding-intron (ENSMUSG00000018428.15, intron 1 of 10) -2330 ENSMUSG00000092399.1 ENSMUSG00000092399 ENSMUST00000173677 4930556N13Rik antisense Interval_8913 chr1 152084336 152085239 + 0 NA intron (ENSMUSG00000032666.16, intron 1 of 6) protein_coding-intron (ENSMUSG00000032666.16, intron 1 of 5) 5183 ENSMUSG00000032666.16 ENSMUSG00000032666 ENSMUST00000121533 1700025G04Rik protein_coding Interval_6605 chr1 118228687 118228976 + 0 NA Intergenic Intergenic -21032 ENSMUSG00000099870.1 ENSMUSG00000099870 ENSMUST00000188426 Gm7200 processed_pseudogene Interval_37756 chr12 71737366 71737821 + 0 NA Intergenic Intergenic 12941 ENSMUSG00000084463.1 ENSMUSG00000084463 ENSMUST00000122514 Gm22959 misc_RNA Interval_42268 chr13 11369219 11370422 + 0 NA Intergenic Intergenic 57078 ENSMUSG00000077618.1 ENSMUSG00000077618 ENSMUST00000104430 Gm25496 snoRNA Interval_86138 chr19 36983997 36985036 + 0 NA intron (ENSMUSG00000040565.8, intron 13 of 15) protein_coding-intron (ENSMUSG00000040565.8, intron 19 of 37) 24331 ENSMUSG00000040565.8 ENSMUSG00000040565 ENSMUST00000236343 Btaf1 protein_coding Interval_116169 chr4 108348393 108351121 + 0 NA Intergenic Intergenic 21568 ENSMUSG00000048351.14 ENSMUSG00000048351 ENSMUST00000147054 Coa7 protein_coding Interval_170741 chr9 110465155 110465474 + 0 NA intron (ENSMUSG00000054792.15, intron 1 of 9) protein_coding-intron (ENSMUSG00000054792.15, intron 1 of 9) -9913 ENSMUSG00000054792.15 ENSMUSG00000054792 ENSMUST00000198327 Klhl18 protein_coding Interval_75264 chr17 65552324 65552545 + 0 NA Intergenic Intergenic 8342 ENSMUSG00000117158.1 ENSMUSG00000117158 ENSMUST00000233030 Gm49866 processed_pseudogene Interval_71327 chr17 22305900 22306761 + 0 NA intron (ENSMUSG00000117284.1, intron 3 of 5) protein_coding-intron (ENSMUSG00000117284.1, intron 3 of 5) 8507 ENSMUSG00000117284.1 ENSMUSG00000117284 ENSMUST00000233465 Gm7072 protein_coding Interval_21097 chr10 126330421 126330969 + 0 NA Intergenic Intergenic -41280 ENSMUSG00000112482.1 ENSMUSG00000112482 ENSMUST00000218075 1700025K04Rik lincRNA Interval_82734 chr18 76298986 76299502 + 0 NA TTS (ENSMUSG00000024563.16) protein_coding-TTS (ENSMUSG00000024563.16) -22580 ENSMUSG00000117816.1 ENSMUSG00000117816 ENSMUST00000235901 Gm50360 processed_pseudogene Interval_26232 chr11 55322810 55324570 + 0 NA intron (ENSMUSG00000055333.14, intron 1 of 23) protein_coding-intron (ENSMUSG00000055333.14, intron 1 of 23) -11433 ENSMUSG00000055333.14 ENSMUSG00000055333 ENSMUST00000108864 Fat2 protein_coding Interval_117753 chr4 126024558 126024801 + 0 NA promoter-TSS (ENSMUSG00000028859.14) protein_coding-promoter-TSS (ENSMUSG00000028859.14) -47 ENSMUSG00000028859.14 ENSMUSG00000028859 ENSMUST00000140426 Csf3r protein_coding Interval_75828 chr17 71671931 71672729 + 0 NA promoter-TSS (ENSMUSG00000045761.16) protein_coding-promoter-TSS (ENSMUSG00000045761.16) -12475 ENSMUSG00000045761.16 ENSMUSG00000045761 ENSMUST00000129072 Togaram2 protein_coding Interval_33608 chr11 117475328 117476300 + 0 NA Intergenic Intergenic 6783 ENSMUSG00000110653.1 ENSMUSG00000110653 ENSMUST00000212879 Gm34418 lincRNA Interval_160183 chr8 106991900 106992139 + 0 NA intron (ENSMUSG00000041308.6, intron 3 of 6) protein_coding-intron (ENSMUSG00000041308.6, intron 3 of 5) 17592 ENSMUSG00000088969.1 ENSMUSG00000088969 ENSMUST00000158344 Gm22085 snRNA Interval_87378 chr19 48063082 48063360 + 0 NA Intergenic Intergenic -54127 ENSMUSG00000117690.1 ENSMUSG00000117690 ENSMUST00000237618 Gm50430 lincRNA Interval_156130 chr8 45004028 45005371 + 0 NA intron (ENSMUSG00000070047.14, intron 2 of 28) protein_coding-intron (ENSMUSG00000070047.14, intron 2 of 25) 17686 ENSMUSG00000097491.1 ENSMUSG00000097491 ENSMUST00000180753 Gm2366 antisense Interval_66643 chr16 35824294 35826312 + 0 NA exon (ENSMUSG00000022849.5, exon 9 of 9) protein_coding-exon (ENSMUSG00000022849.5, exon 9 of 9) 6958 ENSMUSG00000116549.1 ENSMUSG00000116549 ENSMUST00000231601 Gm49728 processed_pseudogene Interval_44405 chr13 44663981 44664236 + 0 NA Intergenic Intergenic 41926 ENSMUSG00000113730.1 ENSMUSG00000113730 ENSMUST00000221956 Gm47805 lincRNA Interval_52510 chr14 47201942 47202500 + 0 NA Intergenic Intergenic 2351 ENSMUSG00000115566.1 ENSMUSG00000115566 ENSMUST00000228847 Gm49136 processed_pseudogene Interval_112764 chr4 44703302 44704866 + 0 NA promoter-TSS (ENSMUSG00000014030.15) protein_coding-promoter-TSS (ENSMUSG00000014030.15) 1284 ENSMUSG00000103995.1 ENSMUSG00000103995 ENSMUST00000192889 5730488B01Rik TEC Interval_130621 chr5 129257083 129257881 + 0 NA Intergenic Intergenic -106638 ENSMUSG00000104681.1 ENSMUSG00000104681 ENSMUST00000199076 Gm43001 lincRNA Interval_92880 chr2 68026826 68027368 + 0 NA intron (ENSMUSG00000034780.6, intron 3 of 4) protein_coding-intron (ENSMUSG00000034780.6, intron 3 of 4) -54694 ENSMUSG00000081257.1 ENSMUSG00000081257 ENSMUST00000117875 Gm13607 processed_pseudogene Interval_148102 chr7 79228033 79229251 + 0 NA Intergenic Intergenic 44169 ENSMUSG00000108387.1 ENSMUSG00000108387 ENSMUST00000206434 Gm31510 bidirectional_promoter_lncRNA Interval_77115 chr17 86675809 86677042 + 0 NA Intergenic Intergenic 9071 ENSMUSG00000117568.1 ENSMUSG00000117568 ENSMUST00000234033 Gm18832 processed_pseudogene Interval_49427 chr13 111911713 111912819 + 0 NA Intergenic Intergenic -28089 ENSMUSG00000082433.2 ENSMUSG00000082433 ENSMUST00000122415 Gm9025 processed_pseudogene Interval_107990 chr3 119077065 119077502 + 0 NA intron (ENSMUSG00000033308.16, intron 14 of 22) protein_coding-intron (ENSMUSG00000033308.16, intron 14 of 22) 209039 ENSMUSG00000106542.1 ENSMUSG00000106542 ENSMUST00000197510 Gm43410 TEC Interval_103138 chr3 35824348 35824659 + 0 NA intron (ENSMUSG00000037400.17, intron 19 of 21) protein_coding-intron (ENSMUSG00000037400.17, intron 19 of 29) -14546 ENSMUSG00000037400.17 ENSMUSG00000037400 ENSMUST00000197764 Atp11b protein_coding Interval_26323 chr11 56157700 56158273 + 0 NA Intergenic Intergenic 105097 ENSMUSG00000084169.1 ENSMUSG00000084169 ENSMUST00000120178 Gm12240 processed_pseudogene Interval_79143 chr18 24941401 24941935 + 0 NA intron (ENSMUSG00000034295.10, intron 5 of 24) protein_coding-intron (ENSMUSG00000034295.10, intron 5 of 26) 180505 ENSMUSG00000088920.1 ENSMUSG00000088920 ENSMUST00000158295 Gm24294 misc_RNA Interval_46089 chr13 61583014 61583464 + 0 NA Intergenic Intergenic -15065 ENSMUSG00000114904.1 ENSMUSG00000114904 ENSMUST00000225902 Gm49352 protein_coding Interval_76233 chr17 78279550 78280679 + 0 NA promoter-TSS (ENSMUSG00000024074.8) protein_coding-promoter-TSS (ENSMUSG00000024074.8) -22547 ENSMUSG00000092979.1 ENSMUSG00000092979 ENSMUST00000175238 Gm25069 miRNA Interval_70810 chr17 14912386 14912646 + 0 NA intron (ENSMUSG00000046991.12, intron 15 of 24) protein_coding-intron (ENSMUSG00000046991.12, intron 14 of 22) -29449 ENSMUSG00000092577.1 ENSMUSG00000092577 ENSMUST00000172650 Gm7393 processed_pseudogene Interval_56853 chr14 122441149 122441409 + 0 NA intron (ENSMUSG00000064052.3, intron 1 of 2) processed_transcript-intron (ENSMUSG00000064052.3, intron 1 of 2) -4384 ENSMUSG00000064052.3 ENSMUSG00000064052 ENSMUST00000238321 Gm5089 processed_transcript Interval_141713 chr6 133962933 133964651 + 0 NA Intergenic Intergenic -31383 ENSMUSG00000107771.1 ENSMUSG00000107771 ENSMUST00000203939 Gm8956 processed_pseudogene Interval_63857 chr16 4030611 4032649 + 0 NA Intergenic Intergenic -5525 ENSMUSG00000005980.15 ENSMUSG00000005980 ENSMUST00000175755 Dnase1 protein_coding Interval_132349 chr5 144380952 144382215 + 0 NA intron (ENSMUSG00000047843.16, intron 3 of 3) protein_coding-intron (ENSMUSG00000047843.16, intron 3 of 3) 23660 ENSMUSG00000104600.4 ENSMUSG00000104600 ENSMUST00000196370 Dmrt1i sense_intronic Interval_99590 chr2 163403638 163403890 + 0 NA Intergenic Intergenic -5771 ENSMUSG00000017817.11 ENSMUSG00000017817 ENSMUST00000109425 Jph2 protein_coding Interval_119008 chr4 134974706 134975742 + 0 NA Intergenic Intergenic 44322 ENSMUSG00000028821.8 ENSMUSG00000028821 ENSMUST00000144037 Syf2 protein_coding Interval_7582 chr1 132322523 132323439 + 0 NA intron (ENSMUSG00000009772.15, intron 1 of 6) protein_coding-intron (ENSMUSG00000009772.15, intron 1 of 7) -4615 ENSMUSG00000009772.15 ENSMUSG00000009772 ENSMUST00000133246 Nuak2 protein_coding Interval_70869 chr17 15481169 15481769 + 0 NA intron (ENSMUSG00000014769.10, intron 4 of 5) protein_coding-intron (ENSMUSG00000014769.10, intron 4 of 5) 18282 ENSMUSG00000014769.10 ENSMUSG00000014769 ENSMUST00000231341 Psmb1 protein_coding Interval_23045 chr11 19287130 19288080 + 0 NA Intergenic Intergenic 73464 ENSMUSG00000081054.1 ENSMUSG00000081054 ENSMUST00000117768 Gm12025 processed_pseudogene Interval_165262 chr9 45842594 45842849 + 0 NA intron (ENSMUSG00000032086.12, intron 1 of 2) protein_coding-intron (ENSMUSG00000032086.12, intron 1 of 8) -5786 ENSMUSG00000098194.1 ENSMUSG00000098194 ENSMUST00000182691 Gm7286 processed_pseudogene Interval_154554 chr8 19407194 19407489 + 0 NA Intergenic Intergenic -15165 ENSMUSG00000082710.1 ENSMUSG00000082710 ENSMUST00000121373 Defa-ps14 unprocessed_pseudogene Interval_19687 chr10 108061771 108061976 + 0 NA Intergenic Intergenic 80559 ENSMUSG00000112401.1 ENSMUSG00000112401 ENSMUST00000219675 Gm47999 processed_pseudogene Interval_136296 chr6 52680422 52682045 + 0 NA Intergenic Intergenic -32517 ENSMUSG00000004535.12 ENSMUSG00000004535 ENSMUST00000149586 Tax1bp1 protein_coding Interval_1798 chr1 33846949 33847274 + 0 NA Intergenic Intergenic -8431 ENSMUSG00000081402.4 ENSMUSG00000081402 ENSMUST00000117459 Gm15455 processed_pseudogene Interval_10678 chr1 172649970 172650908 + 0 NA Intergenic Intergenic -17477 ENSMUSG00000026544.6 ENSMUSG00000026544 ENSMUST00000027826 Dusp23 protein_coding Interval_34090 chr11 120467036 120468092 + 0 NA promoter-TSS (ENSMUSG00000057594.12) protein_coding-promoter-TSS (ENSMUSG00000057594.12) -71 ENSMUSG00000025793.17 ENSMUSG00000025793 ENSMUST00000135231 Hgs protein_coding Interval_94818 chr2 94719606 94719799 + 0 NA Intergenic Intergenic 11036 ENSMUSG00000087069.1 ENSMUSG00000087069 ENSMUST00000124214 Gm13793 lincRNA Interval_97439 chr2 136349621 136350046 + 0 NA intron (ENSMUSG00000039913.12, intron 1 of 10) protein_coding-intron (ENSMUSG00000039913.12, intron 1 of 10) 38134 ENSMUSG00000039913.12 ENSMUSG00000039913 ENSMUST00000143329 Pak7 protein_coding Interval_86889 chr19 44657796 44658087 + 0 NA Intergenic Intergenic 37519 ENSMUSG00000097683.2 ENSMUSG00000097683 ENSMUST00000181365 Gm26644 lincRNA Interval_172809 chrX 50549905 50550672 + 0 NA Intergenic Intergenic -7504 ENSMUSG00000083112.1 ENSMUSG00000083112 ENSMUST00000120656 Gm14620 processed_pseudogene Interval_48635 chr13 100770544 100770996 + 0 NA TTS (ENSMUSG00000085340.1) processed_pseudogene-TTS (ENSMUSG00000085340.1) 306 ENSMUSG00000085340.1 ENSMUSG00000085340 ENSMUST00000077495 Gm16335 processed_pseudogene Interval_128520 chr5 113800164 113800935 + 0 NA promoter-TSS (ENSMUSG00000054675.5) protein_coding-promoter-TSS (ENSMUSG00000054675.5) -103 ENSMUSG00000054675.5 ENSMUSG00000054675 ENSMUST00000160374 Tmem119 protein_coding Interval_165467 chr9 48474998 48475264 + 0 NA promoter-TSS (ENSMUSG00000032026.7) protein_coding-promoter-TSS (ENSMUSG00000032026.7) 5459 ENSMUSG00000032026.7 ENSMUSG00000032026 ENSMUST00000214161 Rexo2 protein_coding Interval_123407 chr5 32311665 32312059 + 0 NA TTS (ENSMUSG00000081200.1) processed_pseudogene-TTS (ENSMUSG00000081200.1) 257 ENSMUSG00000081200.1 ENSMUSG00000081200 ENSMUST00000118876 Gm15615 processed_pseudogene Interval_143141 chr7 3629051 3630425 + 0 NA promoter-TSS (ENSMUSG00000008373.16) protein_coding-promoter-TSS (ENSMUSG00000008373.16) 121 ENSMUSG00000006335.16 ENSMUSG00000006335 ENSMUST00000153143 Tfpt protein_coding Interval_123871 chr5 36149050 36149260 + 0 NA intron (ENSMUSG00000029093.14, intron 3 of 7) protein_coding-intron (ENSMUSG00000029093.14, intron 3 of 26) -54866 ENSMUSG00000043430.5 ENSMUSG00000043430 ENSMUST00000052224 Psapl1 protein_coding Interval_33036 chr11 113796842 113797165 + 0 NA intron (ENSMUSG00000041592.16, intron 40 of 44) protein_coding-intron (ENSMUSG00000041592.16, intron 40 of 44) 13420 ENSMUSG00000041592.16 ENSMUSG00000041592 ENSMUST00000144301 Sdk2 protein_coding Interval_19688 chr10 108082236 108082477 + 0 NA Intergenic Intergenic 60076 ENSMUSG00000112401.1 ENSMUSG00000112401 ENSMUST00000219675 Gm47999 processed_pseudogene Interval_93590 chr2 74691149 74692987 + 0 NA exon (ENSMUSG00000050368.4, exon 1 of 2) protein_coding-exon (ENSMUSG00000050368.4, exon 1 of 2) 144 ENSMUSG00000050368.4 ENSMUSG00000050368 ENSMUST00000061745 Hoxd10 protein_coding Interval_49957 chr13 118869438 118869805 + 0 NA Intergenic Intergenic -11207 ENSMUSG00000114868.1 ENSMUSG00000114868 ENSMUST00000224309 Gm47335 processed_pseudogene Interval_109175 chr3 137633892 137634398 + 0 NA Intergenic Intergenic 10636 ENSMUSG00000105325.1 ENSMUSG00000105325 ENSMUST00000198288 Gm30946 processed_pseudogene Interval_1296 chr1 19262881 19263068 + 0 NA Intergenic Intergenic 20249 ENSMUSG00000100538.1 ENSMUSG00000100538 ENSMUST00000189218 Gm28340 lincRNA Interval_35088 chr12 17234618 17235102 + 0 NA TTS (ENSMUSG00000113368.1) processed_pseudogene-TTS (ENSMUSG00000113368.1) 1248 ENSMUSG00000113368.1 ENSMUSG00000113368 ENSMUST00000223362 Gm10054 processed_pseudogene Interval_34128 chr11 120790150 120790358 + 0 NA promoter-TSS (ENSMUSG00000025155.15) protein_coding-promoter-TSS (ENSMUSG00000025155.15) 5969 ENSMUSG00000025156.17 ENSMUSG00000025156 ENSMUST00000156723 Gps1 protein_coding Interval_94922 chr2 101781443 101781915 + 0 NA intron (ENSMUSG00000032841.15, intron 1 of 3) protein_coding-intron (ENSMUSG00000032841.15, intron 1 of 8) 16028 ENSMUSG00000032841.15 ENSMUSG00000032841 ENSMUST00000127358 Prr5l protein_coding Interval_28321 chr11 75189659 75190733 + 0 NA intron (ENSMUSG00000078789.9, intron 1 of 7) protein_coding-intron (ENSMUSG00000078789.9, intron 1 of 12) -3587 ENSMUSG00000045287.6 ENSMUSG00000045287 ENSMUST00000102514 Rtn4rl1 protein_coding Interval_171995 chr9 123315442 123315648 + 0 NA intron (ENSMUSG00000058492.5, intron 1 of 2) transcribed_unprocessed_pseudogene-intron (ENSMUSG00000058492.5, intron 1 of 2) -7576 ENSMUSG00000058492.5 ENSMUSG00000058492 ENSMUST00000072166 Scp2-ps2 transcribed_unprocessed_pseudogene Interval_167320 chr9 67338506 67338868 + 0 NA intron (ENSMUSG00000052698.15, intron 24 of 58) protein_coding-intron (ENSMUSG00000052698.15, intron 23 of 57) -8040 ENSMUSG00000052698.15 ENSMUSG00000052698 ENSMUST00000213584 Tln2 protein_coding Interval_155135 chr8 26938889 26939641 + 0 NA Intergenic Intergenic -27169 ENSMUSG00000110345.1 ENSMUSG00000110345 ENSMUST00000211774 Gm45572 lincRNA Interval_85276 chr19 24292221 24292496 + 0 NA Intergenic Intergenic 2642 ENSMUSG00000082107.1 ENSMUSG00000082107 ENSMUST00000118970 Gm16216 processed_pseudogene Interval_153566 chr8 3450269 3452305 + 0 NA TTS (ENSMUSG00000004568.13) protein_coding-TTS (ENSMUSG00000004568.13) -6752 ENSMUSG00000108955.1 ENSMUSG00000108955 ENSMUST00000207266 Gm44775 TEC Interval_2560 chr1 40357467 40359020 + 0 NA intron (ENSMUSG00000070942.8, intron 9 of 10) protein_coding-intron (ENSMUSG00000070942.8, intron 9 of 10) 4391 ENSMUSG00000103230.1 ENSMUSG00000103230 ENSMUST00000192199 Gm17970 processed_pseudogene Interval_47879 chr13 94116732 94118695 + 0 NA promoter-TSS (ENSMUSG00000045312.12) protein_coding-promoter-TSS (ENSMUSG00000045312.12) -229 ENSMUSG00000045312.12 ENSMUSG00000045312 ENSMUST00000121618 Lhfpl2 protein_coding Interval_164619 chr9 40134594 40134872 + 0 NA Intergenic Intergenic -4549 ENSMUSG00000049073.7 ENSMUSG00000049073 ENSMUST00000060345 Olfr985 protein_coding Interval_7592 chr1 132380538 132381512 + 0 NA promoter-TSS (ENSMUSG00000090079.1) antisense-promoter-TSS (ENSMUSG00000090079.1) -104 ENSMUSG00000090079.1 ENSMUSG00000090079 ENSMUST00000159257 Gm15849 antisense Interval_78230 chr18 10460807 10461900 + 0 NA intron (ENSMUSG00000042942.18, intron 4 of 8) protein_coding-intron (ENSMUSG00000042942.18, intron 4 of 32) -15433 ENSMUSG00000042942.18 ENSMUSG00000042942 ENSMUST00000173261 Greb1l protein_coding Interval_74077 chr17 46444547 46445568 + 0 NA exon (ENSMUSG00000015599.9, exon 15 of 15) protein_coding-exon (ENSMUSG00000015599.9, exon 15 of 15) -4960 ENSMUSG00000091742.2 ENSMUSG00000091742 ENSMUST00000166852 Gm5093 processed_pseudogene Interval_166292 chr9 58115644 58116351 + 0 NA intron (ENSMUSG00000037716.15, intron 3 of 4) protein_coding-intron (ENSMUSG00000037716.15, intron 3 of 4) -1818 ENSMUSG00000085753.1 ENSMUSG00000085753 ENSMUST00000131007 Gm16131 antisense Interval_127977 chr5 110023372 110024116 + 0 NA Intergenic Intergenic 17128 ENSMUSG00000066613.14 ENSMUSG00000066613 ENSMUST00000187241 Zfp932 protein_coding Interval_14666 chr10 38466980 38467200 + 0 NA Intergenic Intergenic -32955 ENSMUSG00000110782.1 ENSMUSG00000110782 ENSMUST00000214608 Gm48198 processed_pseudogene Interval_131245 chr5 135971980 135972487 + 0 NA intron (ENSMUSG00000029699.13, intron 1 of 4) protein_coding-intron (ENSMUSG00000029699.13, intron 1 of 10) -4313 ENSMUSG00000029699.13 ENSMUSG00000029699 ENSMUST00000154181 Ssc4d protein_coding Interval_68271 chr16 71885473 71885944 + 0 NA Intergenic Intergenic 6664 ENSMUSG00000116901.1 ENSMUSG00000116901 ENSMUST00000232427 Gm49667 processed_pseudogene Interval_165750 chr9 52155484 52155858 + 0 NA intron (ENSMUSG00000035164.8, intron 1 of 5) protein_coding-intron (ENSMUSG00000035164.8, intron 1 of 5) 12901 ENSMUSG00000035164.8 ENSMUSG00000035164 ENSMUST00000165519 Zc3h12c protein_coding Interval_17486 chr10 77196198 77197786 + 0 NA Intergenic Intergenic 59892 ENSMUSG00000112612.1 ENSMUSG00000112612 ENSMUST00000218871 Gm7775 processed_pseudogene Interval_156550 chr8 50915183 50917360 + 0 NA exon (ENSMUSG00000110246.1, exon 1 of 7) lincRNA-exon (ENSMUSG00000110246.1, exon 1 of 7) 726 ENSMUSG00000110246.1 ENSMUSG00000110246 ENSMUST00000211313 C130073E24Rik lincRNA Interval_151408 chr7 122132353 122133519 + 0 NA promoter-TSS (ENSMUSG00000030868.6) protein_coding-promoter-TSS (ENSMUSG00000030868.6) 49 ENSMUSG00000044702.13 ENSMUSG00000044702 ENSMUST00000205352 Palb2 protein_coding Interval_24526 chr11 34009938 34011068 + 0 NA intron (ENSMUSG00000085684.2, intron 4 of 4) protein_coding-intron (ENSMUSG00000085684.2, intron 4 of 4) -17515 ENSMUSG00000053519.17 ENSMUSG00000053519 ENSMUST00000135034 Kcnip1 protein_coding Interval_52569 chr14 47568023 47568793 + 0 NA promoter-TSS (ENSMUSG00000037526.7) protein_coding-promoter-TSS (ENSMUSG00000037526.7) -4 ENSMUSG00000037526.7 ENSMUSG00000037526 ENSMUST00000228784 Atg14 protein_coding Interval_23992 chr11 29231157 29231515 + 0 NA intron (ENSMUSG00000020462.14, intron 4 of 6) protein_coding-intron (ENSMUSG00000020462.14, intron 4 of 9) 15732 ENSMUSG00000020462.14 ENSMUSG00000020462 ENSMUST00000127940 Cfap36 protein_coding Interval_136753 chr6 59075336 59076194 + 0 NA Intergenic Intergenic -23488 ENSMUSG00000096371.1 ENSMUSG00000096371 ENSMUST00000178930 Gm22367 snoRNA Interval_155152 chr8 27084679 27087138 + 0 NA exon (ENSMUSG00000031486.15, exon 1 of 19) protein_coding-exon (ENSMUSG00000031486.15, exon 1 of 19) -31461 ENSMUSG00000031486.15 ENSMUSG00000031486 ENSMUST00000179351 Adgra2 protein_coding Interval_111290 chr4 17309155 17310004 + 0 NA Intergenic Intergenic -53218 ENSMUSG00000083572.1 ENSMUSG00000083572 ENSMUST00000121293 Gm11849 processed_pseudogene Interval_43698 chr13 35184243 35184552 + 0 NA TTS (ENSMUSG00000113770.1) lincRNA-TTS (ENSMUSG00000113770.1) 14048 ENSMUSG00000102099.2 ENSMUSG00000102099 ENSMUST00000221261 1700011B04Rik processed_transcript Interval_51914 chr14 33908735 33908936 + 0 NA Intergenic Intergenic -14752 ENSMUSG00000021943.7 ENSMUSG00000021943 ENSMUST00000168727 Gdf10 protein_coding Interval_6110 chr1 97217761 97218196 + 0 NA intron (ENSMUSG00000100484.1, intron 4 of 12) unprocessed_pseudogene-intron (ENSMUSG00000100484.1, intron 4 of 12) 55118 ENSMUSG00000100484.1 ENSMUSG00000100484 ENSMUST00000187797 Gm7133 unprocessed_pseudogene Interval_35289 chr12 19875136 19876644 + 0 NA Intergenic Intergenic 6430 ENSMUSG00000113077.1 ENSMUSG00000113077 ENSMUST00000221362 Gm49379 processed_pseudogene Interval_8210 chr1 136525065 136525372 + 0 NA intron (ENSMUSG00000041498.13, intron 25 of 27) protein_coding-intron (ENSMUSG00000041498.13, intron 27 of 29) 1334 ENSMUSG00000101413.1 ENSMUSG00000101413 ENSMUST00000190220 Gm29485 processed_pseudogene Interval_133316 chr5 151644666 151645277 + 0 NA promoter-TSS (ENSMUSG00000033970.15) protein_coding-promoter-TSS (ENSMUSG00000033970.15) -209 ENSMUSG00000033970.15 ENSMUSG00000033970 ENSMUST00000136752 Rfc3 protein_coding Interval_174432 chrX 152242820 152243379 + 0 NA intron (ENSMUSG00000025332.14, intron 5 of 6) protein_coding-intron (ENSMUSG00000025332.14, intron 4 of 24) -26707 ENSMUSG00000025332.14 ENSMUSG00000025332 ENSMUST00000155793 Kdm5c protein_coding Interval_72302 chr17 29048618 29049536 + 0 NA Intergenic Intergenic -5030 ENSMUSG00000117007.1 ENSMUSG00000117007 ENSMUST00000233408 Gm41556 lincRNA Interval_151801 chr7 126748144 126749148 + 0 NA promoter-TSS (ENSMUSG00000108649.1) processed_pseudogene-promoter-TSS (ENSMUSG00000108649.1) -909 ENSMUSG00000108649.1 ENSMUSG00000108649 ENSMUST00000205725 Gm44855 processed_pseudogene Interval_150498 chr7 111247552 111247769 + 0 NA Intergenic Intergenic -118638 ENSMUSG00000109808.1 ENSMUSG00000109808 ENSMUST00000211799 5430402P08Rik lincRNA Interval_159490 chr8 95048071 95048282 + 0 NA TTS (ENSMUSG00000110426.1) TEC-TTS (ENSMUSG00000110426.1) 2195 ENSMUSG00000110426.1 ENSMUSG00000110426 ENSMUST00000211835 Gm45757 TEC Interval_40103 chr12 101302882 101303428 + 0 NA intron (ENSMUSG00000113134.2, intron 11 of 21) transcribed_unprocessed_pseudogene-intron (ENSMUSG00000113134.2, intron 11 of 21) -79457 ENSMUSG00000064424.1 ENSMUSG00000064424 ENSMUST00000082490 Gm22749 snRNA Interval_144115 chr7 19491704 19492147 + 0 NA intron (ENSMUSG00000011263.16, intron 11 of 11) protein_coding-intron (ENSMUSG00000011263.16, intron 4 of 4) 16442 ENSMUSG00000057667.7 ENSMUSG00000057667 ENSMUST00000077408 Bloc1s3 protein_coding Interval_85605 chr19 29032986 29033193 + 0 NA intron (ENSMUSG00000024782.7, intron 2 of 4) protein_coding-intron (ENSMUSG00000024782.7, intron 2 of 4) -5845 ENSMUSG00000024782.7 ENSMUSG00000024782 ENSMUST00000125587 Ak3 protein_coding Interval_39370 chr12 86954324 86955063 + 0 NA intron (ENSMUSG00000034157.12, intron 2 of 2) protein_coding-intron (ENSMUSG00000034157.12, intron 2 of 3) 2036 ENSMUSG00000034157.12 ENSMUSG00000034157 ENSMUST00000191463 Cipc protein_coding Interval_131911 chr5 140745333 140745651 + 0 NA intron (ENSMUSG00000050022.16, intron 1 of 1) protein_coding-intron (ENSMUSG00000050022.16, intron 4 of 7) 21354 ENSMUSG00000050022.16 ENSMUSG00000050022 ENSMUST00000176035 Amz1 protein_coding Interval_14281 chr10 30356838 30357083 + 0 NA Intergenic Intergenic -15958 ENSMUSG00000111047.1 ENSMUSG00000111047 ENSMUST00000213206 Gm4780 transcribed_processed_pseudogene Interval_9275 chr1 155740643 155743139 + 0 NA exon (ENSMUSG00000026468.14, exon 1 of 6) protein_coding-exon (ENSMUSG00000026468.14, exon 1 of 6) 9793 ENSMUSG00000026468.14 ENSMUSG00000026468 ENSMUST00000195275 Lhx4 protein_coding Interval_166918 chr9 63927192 63929372 + 0 NA promoter-TSS (ENSMUSG00000111058.1) lincRNA-promoter-TSS (ENSMUSG00000111058.1) -533 ENSMUSG00000111058.1 ENSMUSG00000111058 ENSMUST00000214827 Gm36033 lincRNA Interval_80087 chr18 37442459 37442655 + 0 NA promoter-TSS (ENSMUSG00000047307.2) protein_coding-promoter-TSS (ENSMUSG00000047307.2) 57 ENSMUSG00000047307.2 ENSMUSG00000047307 ENSMUST00000056915 Pcdhb13 protein_coding Interval_47230 chr13 78548840 78549070 + 0 NA intron (ENSMUSG00000114522.1, intron 3 of 3) lincRNA-intron (ENSMUSG00000114522.1, intron 3 of 3) 65601 ENSMUSG00000114522.1 ENSMUSG00000114522 ENSMUST00000224561 Gm32067 lincRNA Interval_164623 chr9 40179111 40179343 + 0 NA Intergenic Intergenic -1693 ENSMUSG00000051095.7 ENSMUSG00000051095 ENSMUST00000062229 Olfr986 protein_coding Interval_32522 chr11 108116031 108116381 + 0 NA intron (ENSMUSG00000050965.14, intron 3 of 16) protein_coding-intron (ENSMUSG00000050965.14, intron 3 of 16) -65644 ENSMUSG00000084978.1 ENSMUSG00000084978 ENSMUST00000153899 Gm11655 antisense Interval_145070 chr7 29877130 29878228 + 0 NA TTS (ENSMUSG00000058402.14) protein_coding-TTS (ENSMUSG00000058402.14) 17675 ENSMUSG00000058402.14 ENSMUSG00000058402 ENSMUST00000130272 Zfp420 protein_coding Interval_74276 chr17 47842049 47842431 + 0 NA Intergenic Intergenic -1255 ENSMUSG00000065027.1 ENSMUSG00000065027 ENSMUST00000083093 Gm25201 snRNA Interval_42748 chr13 18892943 18893307 + 0 NA Intergenic Intergenic -29452 ENSMUSG00000089046.1 ENSMUSG00000089046 ENSMUST00000158421 Gm26172 snoRNA Interval_52809 chr14 50802868 50803393 + 0 NA intron (ENSMUSG00000071470.4, intron 1 of 2) protein_coding-intron (ENSMUSG00000071470.4, intron 1 of 2) 4602 ENSMUSG00000071470.4 ENSMUSG00000071470 ENSMUST00000227614 Ccnb1ip1 protein_coding Interval_161501 chr8 120753516 120754080 + 0 NA TTS (ENSMUSG00000041515.10) protein_coding-TTS (ENSMUSG00000041515.10) 17439 ENSMUSG00000041515.10 ENSMUSG00000041515 ENSMUST00000160594 Irf8 protein_coding Interval_135096 chr6 35347260 35348047 + 0 NA Intergenic Intergenic 16807 ENSMUSG00000107341.1 ENSMUSG00000107341 ENSMUST00000201560 1700065J11Rik lincRNA Interval_105214 chr3 83904724 83905262 + 0 NA intron (ENSMUSG00000033767.14, intron 2 of 3) protein_coding-intron (ENSMUSG00000033767.14, intron 30 of 33) 2586 ENSMUSG00000033767.14 ENSMUSG00000033767 ENSMUST00000192811 Tmem131l protein_coding Interval_51763 chr14 32054069 32054426 + 0 NA intron (ENSMUSG00000021903.11, intron 6 of 7) protein_coding-intron (ENSMUSG00000021903.11, intron 8 of 9) -17909 ENSMUSG00000115628.1 ENSMUSG00000115628 ENSMUST00000228805 Gm49084 processed_pseudogene Interval_168652 chr9 85454341 85454886 + 0 NA Intergenic Intergenic -18121 ENSMUSG00000065274.1 ENSMUSG00000065274 ENSMUST00000083340 Gm25125 snoRNA Interval_18216 chr10 83752928 83753416 + 0 NA intron (ENSMUSG00000087651.3, intron 1 of 4) protein_coding-intron (ENSMUSG00000087651.3, intron 2 of 5) 15263 ENSMUSG00000087651.3 ENSMUSG00000087651 ENSMUST00000218623 1500009L16Rik protein_coding Interval_31070 chr11 97979582 97980287 + 0 NA intron (ENSMUSG00000017417.14, intron 1 of 7) protein_coding-intron (ENSMUSG00000017417.14, intron 1 of 13) 6499 ENSMUSG00000017417.14 ENSMUSG00000017417 ENSMUST00000107564 Plxdc1 protein_coding Interval_149498 chr7 99135519 99135776 + 0 NA intron (ENSMUSG00000035354.9, intron 1 of 11) protein_coding-intron (ENSMUSG00000035354.9, intron 1 of 14) -5946 ENSMUSG00000109468.1 ENSMUSG00000109468 ENSMUST00000207556 Gm45185 TEC Interval_2684 chr1 43396319 43397142 + 0 NA Intergenic Intergenic -12854 ENSMUSG00000101923.1 ENSMUSG00000101923 ENSMUST00000189199 Gm29041 processed_pseudogene Interval_149840 chr7 101939936 101940506 + 0 NA intron (ENSMUSG00000066306.13, intron 1 of 13) protein_coding-intron (ENSMUSG00000066306.13, intron 1 of 13) 6292 ENSMUSG00000110150.1 ENSMUSG00000110150 ENSMUST00000211386 Gm8523 processed_pseudogene Interval_45910 chr13 59099827 59100463 + 0 NA intron (ENSMUSG00000055254.15, intron 16 of 17) protein_coding-intron (ENSMUSG00000055254.15, intron 16 of 17) -16052 ENSMUSG00000114437.1 ENSMUSG00000114437 ENSMUST00000225244 4930415C11Rik antisense Interval_104372 chr3 64335533 64336200 + 0 NA Intergenic Intergenic 7206 ENSMUSG00000093503.1 ENSMUSG00000093503 ENSMUST00000176989 Vmn2r-ps4 unprocessed_pseudogene Interval_107113 chr3 103653104 103653270 + 0 NA Intergenic Intergenic -7119 ENSMUSG00000087119.4 ENSMUSG00000087119 ENSMUST00000117271 Atg4a-ps protein_coding Interval_90912 chr2 33438344 33441234 + 0 NA Intergenic Intergenic -7013 ENSMUSG00000085742.1 ENSMUSG00000085742 ENSMUST00000132913 Gm13536 antisense Interval_21027 chr10 123767932 123768634 + 0 NA Intergenic Intergenic 123615 ENSMUSG00000112603.1 ENSMUSG00000112603 ENSMUST00000219335 Gm18510 processed_pseudogene Interval_3915 chr1 64747591 64747902 + 0 NA Intergenic Intergenic -9997 ENSMUSG00000045005.9 ENSMUSG00000045005 ENSMUST00000116133 Fzd5 protein_coding Interval_41559 chr12 116280469 116281961 + 0 NA promoter-TSS (ENSMUSG00000021171.8) protein_coding-promoter-TSS (ENSMUSG00000021171.8) -984 ENSMUSG00000113527.1 ENSMUSG00000113527 ENSMUST00000222938 Gm48079 lincRNA Interval_121308 chr4 154891040 154892506 + 0 NA intron (ENSMUSG00000058183.14, intron 15 of 23) protein_coding-intron (ENSMUSG00000058183.14, intron 15 of 23) 7362 ENSMUSG00000029059.9 ENSMUSG00000029059 ENSMUST00000132281 Prxl2b protein_coding Interval_135022 chr6 34718911 34719761 + 0 NA intron (ENSMUSG00000029761.16, intron 1 of 12) protein_coding-intron (ENSMUSG00000029761.16, intron 1 of 12) 7570 ENSMUSG00000060411.3 ENSMUSG00000060411 ENSMUST00000075773 Npn2 antisense Interval_2550 chr1 40290341 40291198 + 0 NA intron (ENSMUSG00000026072.12, intron 2 of 10) protein_coding-intron (ENSMUSG00000026072.12, intron 2 of 10) 24112 ENSMUSG00000026072.12 ENSMUSG00000026072 ENSMUST00000195402 Il1r1 protein_coding Interval_116218 chr4 108806973 108808747 + 0 NA Intergenic Intergenic 22691 ENSMUSG00000028568.16 ENSMUSG00000028568 ENSMUST00000139464 Btf3l4 protein_coding Interval_103821 chr3 53376875 53377100 + 0 NA Intergenic Intergenic 25210 ENSMUSG00000105397.1 ENSMUSG00000105397 ENSMUST00000197550 Gm43471 processed_pseudogene Interval_119534 chr4 138207846 138208068 + 0 NA TTS (ENSMUSG00000028760.16) protein_coding-TTS (ENSMUSG00000028760.16) -7757 ENSMUSG00000078519.3 ENSMUSG00000078519 ENSMUST00000146658 2310026L22Rik lincRNA Interval_118657 chr4 133027039 133028503 + 0 NA intron (ENSMUSG00000037692.14, intron 2 of 8) protein_coding-intron (ENSMUSG00000037692.14, intron 1 of 5) 15933 ENSMUSG00000037692.14 ENSMUSG00000037692 ENSMUST00000148518 Ahdc1 protein_coding Interval_19144 chr10 95087901 95088707 + 0 NA Intergenic Intergenic -28075 ENSMUSG00000112677.1 ENSMUSG00000112677 ENSMUST00000219913 Gm48868 TEC Interval_143809 chr7 16441425 16441642 + 0 NA Intergenic Intergenic -11430 ENSMUSG00000019158.9 ENSMUSG00000019158 ENSMUST00000209536 Tmem160 protein_coding Interval_72180 chr17 28454961 28455551 + 0 NA exon (ENSMUSG00000117084.1, exon 3 of 3) antisense-exon (ENSMUSG00000117084.1, exon 3 of 3) 5839 ENSMUSG00000117294.1 ENSMUSG00000117294 ENSMUST00000233091 Gm49839 TEC Interval_28377 chr11 75473131 75473800 + 0 NA Intergenic Intergenic 4754 ENSMUSG00000038217.13 ENSMUSG00000038217 ENSMUST00000153236 Tlcd2 protein_coding Interval_156694 chr8 57353376 57354209 + 0 NA intron (ENSMUSG00000097910.2, intron 2 of 2) lincRNA-intron (ENSMUSG00000097910.2, intron 2 of 2) 12992 ENSMUSG00000097910.2 ENSMUSG00000097910 ENSMUST00000210633 5033428I22Rik lincRNA Interval_150641 chr7 113035338 113036107 + 0 NA Intergenic Intergenic 51819 ENSMUSG00000110207.1 ENSMUSG00000110207 ENSMUST00000210768 Gm33586 lincRNA Interval_97335 chr2 134681449 134681736 + 0 NA Intergenic Intergenic -37460 ENSMUSG00000034723.11 ENSMUSG00000034723 ENSMUST00000110119 Tmx4 protein_coding Interval_4113 chr1 68779772 68781424 + 0 NA intron (ENSMUSG00000062209.15, intron 1 of 18) protein_coding-intron (ENSMUSG00000062209.15, intron 1 of 27) -18871 ENSMUSG00000103809.1 ENSMUSG00000103809 ENSMUST00000195066 Gm37061 TEC Interval_11065 chr1 179116795 179117537 + 0 NA intron (ENSMUSG00000055067.15, intron 5 of 11) protein_coding-intron (ENSMUSG00000055067.15, intron 2 of 8) -199552 ENSMUSG00000089713.1 ENSMUSG00000089713 ENSMUST00000162545 Gm16564 antisense Interval_110197 chr3 154186943 154187491 + 0 NA intron (ENSMUSG00000028360.10, intron 2 of 21) protein_coding-intron (ENSMUSG00000028360.10, intron 2 of 21) 48120 ENSMUSG00000104622.1 ENSMUSG00000104622 ENSMUST00000199871 Gm42541 TEC Interval_58506 chr15 35295805 35296857 + 0 NA exon (ENSMUSG00000022330.5, exon 1 of 4) protein_coding-exon (ENSMUSG00000022330.5, exon 1 of 4) 220 ENSMUSG00000022330.5 ENSMUSG00000022330 ENSMUST00000228152 Osr2 protein_coding Interval_159272 chr8 92673147 92674960 + 0 NA promoter-TSS (ENSMUSG00000031738.14) protein_coding-promoter-TSS (ENSMUSG00000031738.14) -773 ENSMUSG00000031738.14 ENSMUSG00000031738 ENSMUST00000167261 Irx6 protein_coding Interval_119800 chr4 140058739 140060640 + 0 NA intron (ENSMUSG00000040972.8, intron 4 of 9) protein_coding-intron (ENSMUSG00000040972.8, intron 4 of 9) -72188 ENSMUSG00000085968.1 ENSMUSG00000085968 ENSMUST00000135858 Gm13027 antisense Interval_33506 chr11 116918381 116919974 + 0 NA exon (ENSMUSG00000043857.16, exon 1 of 18) protein_coding-exon (ENSMUSG00000043857.16, exon 1 of 18) -28158 ENSMUSG00000043857.16 ENSMUSG00000043857 ENSMUST00000126757 Mgat5b protein_coding Interval_65799 chr16 28919556 28921244 + 0 NA intron (ENSMUSG00000051065.9, intron 1 of 1) protein_coding-intron (ENSMUSG00000051065.9, intron 1 of 1) 30955 ENSMUSG00000116861.1 ENSMUSG00000116861 ENSMUST00000232466 Gm8253 processed_pseudogene Interval_88038 chr19 58193835 58194948 + 0 NA Intergenic Intergenic -9748 ENSMUSG00000087002.1 ENSMUSG00000087002 ENSMUST00000143595 Gm16277 antisense Interval_118443 chr4 131639396 131639630 + 0 NA Intergenic Intergenic 32628 ENSMUSG00000087171.1 ENSMUSG00000087171 ENSMUST00000138697 Gm12962 lincRNA Interval_28182 chr11 73680770 73680998 + 0 NA Intergenic Intergenic -7915 ENSMUSG00000060630.7 ENSMUSG00000060630 ENSMUST00000145996 Zfp735 protein_coding Interval_110533 chr4 3651233 3651571 + 0 NA Intergenic Intergenic -5106 ENSMUSG00000085394.1 ENSMUSG00000085394 ENSMUST00000139600 2210414B05Rik lincRNA Interval_37736 chr12 71499579 71499917 + 0 NA intron (ENSMUSG00000113630.1, intron 1 of 5) lincRNA-intron (ENSMUSG00000113630.1, intron 1 of 5) 11463 ENSMUSG00000113630.1 ENSMUSG00000113630 ENSMUST00000220948 4930404H11Rik lincRNA Interval_164672 chr9 40472324 40473511 + 0 NA intron (ENSMUSG00000040111.17, intron 1 of 20) protein_coding-intron (ENSMUSG00000040111.17, intron 1 of 20) -14803 ENSMUSG00000111515.1 ENSMUSG00000111515 ENSMUST00000215697 Gm5055 processed_pseudogene Interval_108394 chr3 126584078 126584283 + 0 NA Intergenic Intergenic -13026 ENSMUSG00000053819.16 ENSMUSG00000053819 ENSMUST00000198637 Camk2d protein_coding Interval_9056 chr1 153326202 153326672 + 0 NA intron (ENSMUSG00000026478.14, intron 1 of 27) protein_coding-intron (ENSMUSG00000026478.14, intron 1 of 27) 21005 ENSMUSG00000079138.3 ENSMUSG00000079138 ENSMUST00000110797 Gm8818 processed_pseudogene Interval_166192 chr9 57348094 57348533 + 0 NA Intergenic Intergenic 14185 ENSMUSG00000066626.5 ENSMUSG00000066626 ENSMUST00000085711 Gm5121 processed_pseudogene Interval_77222 chr17 87439048 87439508 + 0 NA intron (ENSMUSG00000036438.14, intron 1 of 4) protein_coding-intron (ENSMUSG00000036438.14, intron 2 of 5) 7657 ENSMUSG00000036438.14 ENSMUSG00000036438 ENSMUST00000238271 Calm2 protein_coding Interval_33456 chr11 116636234 116637097 + 0 NA Intergenic Intergenic -16869 ENSMUSG00000075410.13 ENSMUSG00000075410 ENSMUST00000156088 Prcd protein_coding Interval_34400 chr12 3870887 3872238 + 0 NA intron (ENSMUSG00000020661.15, intron 2 of 18) protein_coding-intron (ENSMUSG00000020661.15, intron 4 of 22) -9318 ENSMUSG00000073242.4 ENSMUSG00000073242 ENSMUST00000144896 Dnmt3aos antisense Interval_103239 chr3 37324219 37324646 + 0 NA intron (ENSMUSG00000106407.1, intron 1 of 1) processed_transcript-intron (ENSMUSG00000106407.1, intron 1 of 1) -2640 ENSMUSG00000083353.1 ENSMUSG00000083353 ENSMUST00000121938 Gm12540 processed_pseudogene Interval_13640 chr10 20356561 20356938 + 0 NA intron (ENSMUSG00000019992.8, intron 4 of 4) protein_coding-intron (ENSMUSG00000019992.8, intron 5 of 6) 8688 ENSMUSG00000111351.1 ENSMUSG00000111351 ENSMUST00000213596 Gm48537 processed_pseudogene Interval_81000 chr18 52541488 52541729 + 0 NA intron (ENSMUSG00000118365.1, intron 1 of 2) antisense-intron (ENSMUSG00000118365.1, intron 1 of 2) -11741 ENSMUSG00000024529.14 ENSMUSG00000024529 ENSMUST00000171470 Lox protein_coding Interval_140160 chr6 114929592 114930488 + 0 NA intron (ENSMUSG00000030315.15, intron 2 of 5) protein_coding-intron (ENSMUSG00000030315.15, intron 2 of 4) -8224 ENSMUSG00000030315.15 ENSMUSG00000030315 ENSMUST00000204693 Vgll4 protein_coding Interval_156673 chr8 56783125 56783333 + 0 NA Intergenic Intergenic 70180 ENSMUSG00000109760.1 ENSMUSG00000109760 ENSMUST00000210829 Gm6503 processed_pseudogene Interval_22288 chr11 8548181 8548692 + 0 NA exon (ENSMUSG00000020422.14, exon 3 of 3) protein_coding-exon (ENSMUSG00000020422.14, exon 3 of 3) 116245 ENSMUSG00000020422.14 ENSMUSG00000020422 ENSMUST00000134823 Tns3 protein_coding Interval_97010 chr2 130487597 130488659 + 0 NA intron (ENSMUSG00000027303.18, intron 1 of 11) protein_coding-intron (ENSMUSG00000027303.18, intron 1 of 20) -35867 ENSMUSG00000115955.1 ENSMUSG00000115955 ENSMUST00000229108 9530056E24Rik TEC Interval_48735 chr13 102605300 102606010 + 0 NA exon (ENSMUSG00000114730.1, exon 1 of 1) processed_pseudogene-exon (ENSMUSG00000114730.1, exon 1 of 1) 1122 ENSMUSG00000114730.1 ENSMUSG00000114730 ENSMUST00000225869 Gm47014 processed_pseudogene Interval_95028 chr2 103294176 103296085 + 0 NA intron (ENSMUSG00000012350.15, intron 1 of 2) protein_coding-intron (ENSMUSG00000012350.15, intron 1 of 8) 7790 ENSMUSG00000012350.15 ENSMUSG00000012350 ENSMUST00000128546 Ehf protein_coding Interval_80771 chr18 46948908 46949122 + 0 NA Intergenic Intergenic -6839 ENSMUSG00000117411.1 ENSMUSG00000117411 ENSMUST00000234725 Gm3744 processed_pseudogene Interval_45662 chr13 56653133 56654698 + 0 NA Intergenic Intergenic 22702 ENSMUSG00000035493.10 ENSMUSG00000035493 ENSMUST00000226024 Tgfbi protein_coding Interval_27764 chr11 69853950 69854381 + 0 NA TTS (ENSMUSG00000001583.13) protein_coding-TTS (ENSMUSG00000001583.13) 1437 ENSMUSG00000001583.13 ENSMUSG00000001583 ENSMUST00000125571 Tnk1 protein_coding Interval_146654 chr7 49198132 49198359 + 0 NA exon (ENSMUSG00000103834.1, exon 1 of 1) TEC-exon (ENSMUSG00000103834.1, exon 1 of 1) 2704 ENSMUSG00000103834.1 ENSMUSG00000103834 ENSMUST00000195677 Gm37613 TEC Interval_42840 chr13 20200613 20200825 + 0 NA intron (ENSMUSG00000041112.17, intron 2 of 3) protein_coding-intron (ENSMUSG00000041112.17, intron 2 of 21) -71186 ENSMUSG00000113649.1 ENSMUSG00000113649 ENSMUST00000222367 Gm47665 TEC Interval_152263 chr7 131062517 131062950 + 0 NA intron (ENSMUSG00000047517.12, intron 14 of 47) protein_coding-intron (ENSMUSG00000047517.12, intron 13 of 46) 30680 ENSMUSG00000047517.12 ENSMUSG00000047517 ENSMUST00000209167 Dmbt1 protein_coding Interval_107331 chr3 105928309 105930057 + 0 NA intron (ENSMUSG00000074342.3, intron 1 of 2) protein_coding-intron (ENSMUSG00000074342.3, intron 1 of 5) -1167 ENSMUSG00000074342.3 ENSMUSG00000074342 ENSMUST00000126230 I830077J02Rik protein_coding Interval_43287 chr13 28774528 28775041 + 0 NA intron (ENSMUSG00000085936.7, intron 2 of 7) processed_transcript-intron (ENSMUSG00000085936.7, intron 1 of 5) -52339 ENSMUSG00000092093.1 ENSMUSG00000092093 ENSMUST00000171026 Gm17528 pseudogene Interval_123438 chr5 32578269 32578671 + 0 NA intron (ENSMUSG00000085234.1, intron 2 of 3) antisense-intron (ENSMUSG00000085234.1, intron 2 of 3) 27806 ENSMUSG00000106835.3 ENSMUSG00000106835 ENSMUST00000202701 Gm43812 transcribed_unprocessed_pseudogene Interval_64541 chr16 13182308 13182824 + 0 NA Intergenic Intergenic 50175 ENSMUSG00000022545.13 ENSMUSG00000022545 ENSMUST00000156393 Ercc4 protein_coding Interval_67416 chr16 48479473 48479726 + 0 NA promoter-TSS (ENSMUSG00000022652.7) protein_coding-promoter-TSS (ENSMUSG00000022652.7) -33 ENSMUSG00000022652.7 ENSMUSG00000022652 ENSMUST00000232195 Morc1 protein_coding Interval_149493 chr7 99092147 99093110 + 0 NA intron (ENSMUSG00000035354.9, intron 4 of 11) protein_coding-intron (ENSMUSG00000035354.9, intron 4 of 14) 2396 ENSMUSG00000109492.1 ENSMUSG00000109492 ENSMUST00000208990 Gm33882 processed_pseudogene Interval_32611 chr11 109143245 109144086 + 0 NA intron (ENSMUSG00000078605.2, intron 1 of 2) protein_coding-intron (ENSMUSG00000078605.2, intron 1 of 2) 704 ENSMUSG00000078605.2 ENSMUSG00000078605 ENSMUST00000106710 E030025P04Rik protein_coding Interval_25091 chr11 43790424 43790937 + 0 NA intron (ENSMUSG00000050541.14, intron 1 of 1) protein_coding-intron (ENSMUSG00000050541.14, intron 4 of 4) -42688 ENSMUSG00000041278.10 ENSMUSG00000041278 ENSMUST00000147984 Ttc1 protein_coding Interval_125198 chr5 65283905 65284713 + 0 NA intron (ENSMUSG00000029191.16, intron 12 of 24) protein_coding-intron (ENSMUSG00000029191.16, intron 12 of 24) -10642 ENSMUSG00000029191.16 ENSMUSG00000029191 ENSMUST00000203644 Rfc1 protein_coding Interval_60013 chr15 63828444 63829895 + 0 NA intron (ENSMUSG00000056293.12, intron 7 of 13) protein_coding-intron (ENSMUSG00000056293.12, intron 4 of 10) 11967 ENSMUSG00000099435.6 ENSMUSG00000099435 ENSMUST00000185277 1700065I16Rik transcribed_unprocessed_pseudogene Interval_16215 chr10 61475382 61476602 + 0 NA exon (ENSMUSG00000043126.5, exon 1 of 1) antisense-exon (ENSMUSG00000043126.5, exon 1 of 1) 191 ENSMUSG00000037151.8 ENSMUSG00000037151 ENSMUST00000049242 Lrrc20 protein_coding Interval_106461 chr3 96514642 96515604 + 0 NA Intergenic Intergenic -10049 ENSMUSG00000038403.10 ENSMUSG00000038403 ENSMUST00000049208 Hjv protein_coding Interval_18858 chr10 91361615 91362494 + 0 NA Intergenic Intergenic 51709 ENSMUSG00000111525.1 ENSMUSG00000111525 ENSMUST00000214371 Gm47082 lincRNA Interval_135780 chr6 47285762 47287002 + 0 NA intron (ENSMUSG00000039419.17, intron 2 of 3) protein_coding-intron (ENSMUSG00000039419.17, intron 2 of 3) 146707 ENSMUSG00000107853.1 ENSMUSG00000107853 ENSMUST00000203098 Gm18584 processed_pseudogene Interval_158708 chr8 85460741 85462197 + 0 NA Intergenic Intergenic -28655 ENSMUSG00000036934.9 ENSMUSG00000036934 ENSMUST00000210556 4921524J17Rik protein_coding Interval_37504 chr12 69422733 69423256 + 0 NA Intergenic Intergenic -50526 ENSMUSG00000052673.2 ENSMUSG00000052673 ENSMUST00000053451 Gm9887 antisense Interval_101618 chr3 7909726 7909931 + 0 NA Intergenic Intergenic 16493 ENSMUSG00000103399.1 ENSMUSG00000103399 ENSMUST00000194764 Gm29747 processed_pseudogene Interval_139074 chr6 94776345 94777221 + 0 NA Intergenic Intergenic -22649 ENSMUSG00000107716.1 ENSMUSG00000107716 ENSMUST00000203986 Gm43997 TEC Interval_165203 chr9 45268694 45270037 + 0 NA promoter-TSS (ENSMUSG00000032089.16) protein_coding-promoter-TSS (ENSMUSG00000032089.16) -216 ENSMUSG00000032089.16 ENSMUSG00000032089 ENSMUST00000176222 Il10ra protein_coding Interval_102486 chr3 27142011 27142565 + 0 NA intron (ENSMUSG00000027699.19, intron 6 of 23) protein_coding-intron (ENSMUSG00000027699.19, intron 6 of 18) 4913 ENSMUSG00000027699.19 ENSMUSG00000027699 ENSMUST00000175857 Ect2 protein_coding Interval_43412 chr13 30272067 30272699 + 0 NA Intergenic Intergenic 40530 ENSMUSG00000038732.15 ENSMUSG00000038732 ENSMUST00000222095 Mboat1 protein_coding Interval_70995 chr17 17054453 17054765 + 0 NA Intergenic Intergenic -9504 ENSMUSG00000096696.1 ENSMUSG00000096696 ENSMUST00000127027 Zfp960 protein_coding Interval_129646 chr5 121517696 121517949 + 0 NA TTS (ENSMUSG00000072647.6) protein_coding-TTS (ENSMUSG00000072647.6) 13073 ENSMUSG00000082265.1 ENSMUSG00000082265 ENSMUST00000122152 Gm15547 processed_pseudogene Interval_126093 chr5 77335811 77336289 + 0 NA intron (ENSMUSG00000029250.5, intron 15 of 24) protein_coding-intron (ENSMUSG00000029250.5, intron 15 of 24) -4318 ENSMUSG00000029250.5 ENSMUSG00000029250 ENSMUST00000150191 Polr2b protein_coding Interval_36263 chr12 40445307 40446940 + 0 NA promoter-TSS (ENSMUSG00000055917.15) protein_coding-promoter-TSS (ENSMUSG00000055917.15) 40 ENSMUSG00000035954.10 ENSMUSG00000035954 ENSMUST00000220850 Dock4 protein_coding Interval_62616 chr15 95633944 95634723 + 0 NA intron (ENSMUSG00000045608.7, intron 2 of 3) protein_coding-intron (ENSMUSG00000045608.7, intron 2 of 3) -1505 ENSMUSG00000045608.7 ENSMUSG00000045608 ENSMUST00000229611 Dbx2 protein_coding Interval_133393 chr6 4641906 4642430 + 0 NA exon (ENSMUSG00000015189.12, exon 18 of 18) protein_coding-exon (ENSMUSG00000015189.12, exon 18 of 18) 11041 ENSMUSG00000015189.12 ENSMUSG00000015189 ENSMUST00000204372 Casd1 protein_coding Interval_46079 chr13 61157502 61158260 + 0 NA Intergenic Intergenic 6375 ENSMUSG00000055679.5 ENSMUSG00000055679 ENSMUST00000021889 Ctsr protein_coding Interval_57117 chr15 6661973 6662431 + 0 NA intron (ENSMUSG00000022148.16, intron 3 of 3) protein_coding-intron (ENSMUSG00000022148.16, intron 17 of 17) 8279 ENSMUSG00000067547.6 ENSMUSG00000067547 ENSMUST00000146631 Gm7666 transcribed_processed_pseudogene Interval_141966 chr6 136130392 136130751 + 0 NA intron (ENSMUSG00000030209.14, intron 1 of 1) protein_coding-intron (ENSMUSG00000030209.14, intron 2 of 13) -42490 ENSMUSG00000097496.1 ENSMUSG00000097496 ENSMUST00000181537 Gm26653 antisense Interval_168883 chr9 88349602 88350906 + 0 NA intron (ENSMUSG00000032420.8, intron 1 of 5) protein_coding-intron (ENSMUSG00000032420.8, intron 1 of 8) -5433 ENSMUSG00000032420.8 ENSMUSG00000032420 ENSMUST00000217134 Nt5e protein_coding Interval_142135 chr6 137533060 137533905 + 0 NA intron (ENSMUSG00000015766.14, intron 4 of 11) protein_coding-intron (ENSMUSG00000015766.14, intron 4 of 21) 37277 ENSMUSG00000015766.14 ENSMUSG00000015766 ENSMUST00000205037 Eps8 protein_coding Interval_86351 chr19 38944241 38944580 + 0 NA TTS (ENSMUSG00000025001.11) protein_coding-TTS (ENSMUSG00000025001.11) 13020 ENSMUSG00000025001.11 ENSMUSG00000025001 ENSMUST00000127968 Hells protein_coding Interval_30142 chr11 89656506 89656906 + 0 NA intron (ENSMUSG00000047773.15, intron 3 of 21) protein_coding-intron (ENSMUSG00000047773.15, intron 1 of 16) 184560 ENSMUSG00000047773.15 ENSMUSG00000047773 ENSMUST00000207171 Ankfn1 protein_coding Interval_135820 chr6 47555687 47555893 + 0 NA TTS (ENSMUSG00000029687.16) protein_coding-TTS (ENSMUSG00000029687.16) -29426 ENSMUSG00000107628.1 ENSMUSG00000107628 ENSMUST00000203199 Gm44282 processed_pseudogene Interval_141279 chr6 126802835 126803431 + 0 NA intron (ENSMUSG00000118420.1, intron 1 of 2) transcribed_unitary_pseudogene-intron (ENSMUSG00000118420.1, intron 1 of 2) 7511 ENSMUSG00000118420.1 ENSMUSG00000118420 ENSMUST00000238440 Gm29788 transcribed_unitary_pseudogene Interval_119901 chr4 140768648 140771374 + 0 NA intron (ENSMUSG00000025330.6, intron 1 of 15) protein_coding-intron (ENSMUSG00000025330.6, intron 1 of 15) -8234 ENSMUSG00000025330.6 ENSMUSG00000025330 ENSMUST00000137440 Padi4 protein_coding Interval_144424 chr7 25076832 25077686 + 0 NA promoter-TSS (ENSMUSG00000045252.11) protein_coding-promoter-TSS (ENSMUSG00000045252.11) 4692 ENSMUSG00000045252.11 ENSMUSG00000045252 ENSMUST00000053410 Zfp574 protein_coding Interval_142846 chr6 146394481 146394672 + 0 NA intron (ENSMUSG00000030287.15, intron 10 of 13) protein_coding-intron (ENSMUSG00000030287.15, intron 11 of 56) 18159 ENSMUSG00000107743.1 ENSMUSG00000107743 ENSMUST00000204247 Gm44087 TEC Interval_104195 chr3 60347824 60348058 + 0 NA Intergenic Intergenic -4848 ENSMUSG00000107270.1 ENSMUSG00000107270 ENSMUST00000201864 Tgif1-ps processed_pseudogene Interval_118867 chr4 134163058 134163259 + 0 NA TTS (ENSMUSG00000037443.13) protein_coding-TTS (ENSMUSG00000037443.13) 4737 ENSMUSG00000098693.1 ENSMUSG00000098693 ENSMUST00000184419 Gm27619 snoRNA Interval_59460 chr15 53309709 53312222 + 0 NA intron (ENSMUSG00000061731.9, intron 1 of 10) protein_coding-intron (ENSMUSG00000061731.9, intron 1 of 10) -72954 ENSMUSG00000087805.2 ENSMUSG00000087805 ENSMUST00000157180 Gm27926 snRNA Interval_9519 chr1 158355714 158356664 + 0 NA promoter-TSS (ENSMUSG00000004031.13) protein_coding-promoter-TSS (ENSMUSG00000004031.13) 40 ENSMUSG00000004031.13 ENSMUSG00000004031 ENSMUST00000192709 Brinp2 protein_coding Interval_1723 chr1 32665488 32665791 + 0 NA Intergenic Intergenic -44540 ENSMUSG00000104433.1 ENSMUSG00000104433 ENSMUST00000195241 Gm37426 TEC Interval_67568 chr16 51002456 51002903 + 0 NA Intergenic Intergenic -48451 ENSMUSG00000116706.1 ENSMUSG00000116706 ENSMUST00000231893 Gm32431 lincRNA Interval_12274 chr1 191316765 191318284 + 0 NA intron (ENSMUSG00000037499.9, intron 1 of 3) protein_coding-intron (ENSMUSG00000037499.9, intron 1 of 3) 670 ENSMUSG00000037499.9 ENSMUSG00000037499 ENSMUST00000046770 Nenf protein_coding Interval_70877 chr17 15530154 15530399 + 0 NA Intergenic Intergenic -3163 ENSMUSG00000014771.13 ENSMUSG00000014771 ENSMUST00000137233 Pdcd2 protein_coding Interval_49351 chr13 111418542 111419250 + 0 NA Intergenic Intergenic 34527 ENSMUSG00000032745.18 ENSMUSG00000032745 ENSMUST00000129638 Gpbp1 protein_coding Interval_26059 chr11 53839572 53840094 + 0 NA intron (ENSMUSG00000081769.9, intron 1 of 3) protein_coding-intron (ENSMUSG00000081769.9, intron 2 of 3) 10215 ENSMUSG00000081769.9 ENSMUSG00000081769 ENSMUST00000121435 Gm12216 protein_coding Interval_65461 chr16 22466491 22467176 + 0 NA Intergenic Intergenic -44647 ENSMUSG00000089874.1 ENSMUSG00000089874 ENSMUST00000159309 9230117E06Rik antisense Interval_167202 chr9 66126320 66127191 + 0 NA promoter-TSS (ENSMUSG00000032382.14) protein_coding-promoter-TSS (ENSMUSG00000032382.14) 144 ENSMUSG00000032381.5 ENSMUSG00000032381 ENSMUST00000034945 Ciao2a protein_coding Interval_26720 chr11 59971556 59972605 + 0 NA promoter-TSS (ENSMUSG00000000301.16) protein_coding-promoter-TSS (ENSMUSG00000000301.16) -570 ENSMUSG00000000301.16 ENSMUSG00000000301 ENSMUST00000133028 Pemt protein_coding Interval_133993 chr6 17561740 17563359 + 0 NA intron (ENSMUSG00000009376.15, intron 19 of 21) protein_coding-intron (ENSMUSG00000009376.15, intron 17 of 19) 27548 ENSMUSG00000009376.15 ENSMUSG00000009376 ENSMUST00000148903 Met protein_coding Interval_135013 chr6 34558822 34560264 + 0 NA Intergenic Intergenic 25990 ENSMUSG00000085187.1 ENSMUSG00000085187 ENSMUST00000125185 Gm13860 lincRNA Interval_80308 chr18 39045170 39045863 + 0 NA intron (ENSMUSG00000036452.18, intron 1 of 22) protein_coding-intron (ENSMUSG00000036452.18, intron 1 of 22) -51324 ENSMUSG00000086991.1 ENSMUSG00000086991 ENSMUST00000131421 Gm15334 antisense Interval_102998 chr3 34101521 34101744 + 0 NA Intergenic Intergenic -21452 ENSMUSG00000027679.13 ENSMUSG00000027679 ENSMUST00000117223 Dnajc19 protein_coding Interval_60714 chr15 76314536 76314929 + 0 NA intron (ENSMUSG00000022562.15, intron 1 of 1) protein_coding-intron (ENSMUSG00000022562.15, intron 1 of 1) -12599 ENSMUSG00000022562.15 ENSMUSG00000022562 ENSMUST00000165279 Oplah protein_coding Interval_128381 chr5 112999094 112999809 + 0 NA intron (ENSMUSG00000042249.11, intron 1 of 19) protein_coding-intron (ENSMUSG00000042249.11, intron 1 of 20) 16063 ENSMUSG00000042249.11 ENSMUSG00000042249 ENSMUST00000197776 Grk3 protein_coding Interval_174835 chrX 169159662 169160219 + 0 NA intron (ENSMUSG00000031355.16, intron 1 of 12) protein_coding-intron (ENSMUSG00000031355.16, intron 1 of 12) 27260 ENSMUSG00000031354.16 ENSMUSG00000031354 ENSMUST00000154923 Amelx protein_coding Interval_90607 chr2 31435418 31436338 + 0 NA exon (ENSMUSG00000055632.18, exon 84 of 98) protein_coding-exon (ENSMUSG00000055632.18, exon 84 of 98) -64848 ENSMUSG00000076441.9 ENSMUSG00000076441 ENSMUST00000130195 Ass1 protein_coding Interval_22817 chr11 16314896 16315654 + 0 NA intron (ENSMUSG00000048834.16, intron 4 of 6) protein_coding-intron (ENSMUSG00000048834.16, intron 4 of 6) 57212 ENSMUSG00000048834.16 ENSMUSG00000048834 ENSMUST00000207256 Vstm2a protein_coding Interval_148920 chr7 90070505 90071040 + 0 NA Intergenic Intergenic 28075 ENSMUSG00000108897.1 ENSMUSG00000108897 ENSMUST00000208325 Gm44861 TEC Interval_140707 chr6 120743135 120743692 + 0 NA intron (ENSMUSG00000071226.11, intron 3 of 7) protein_coding-intron (ENSMUSG00000071226.11, intron 7 of 18) 7657 ENSMUSG00000071226.11 ENSMUSG00000071226 ENSMUST00000143563 Cecr2 protein_coding Interval_73317 chr17 36166215 36169426 + 0 NA promoter-TSS (ENSMUSG00000073402.11) protein_coding-promoter-TSS (ENSMUSG00000073402.11) 24 ENSMUSG00000073402.11 ENSMUSG00000073402 ENSMUST00000173625 Gm8909 protein_coding Interval_118117 chr4 129047408 129049744 + 0 NA Intergenic Intergenic 9407 ENSMUSG00000085085.2 ENSMUSG00000085085 ENSMUST00000149472 1700086P04Rik lincRNA Interval_90473 chr2 30685094 30685453 + 0 NA intron (ENSMUSG00000086405.1, intron 2 of 3) lincRNA-intron (ENSMUSG00000086405.1, intron 2 of 3) -15365 ENSMUSG00000087268.1 ENSMUSG00000087268 ENSMUST00000144704 Gm14486 lincRNA Interval_19508 chr10 100890794 100891274 + 0 NA Intergenic Intergenic -149399 ENSMUSG00000112104.1 ENSMUSG00000112104 ENSMUST00000218270 Gm35722 lincRNA Interval_283 KZ289085.1 23908 24438 + 0 NA NA NA NA NA Interval_50238 chr14 11021255 11022417 + 0 NA intron (ENSMUSG00000060579.13, intron 1 of 7) protein_coding-intron (ENSMUSG00000060579.13, intron 2 of 9) -140354 ENSMUSG00000089785.2 ENSMUSG00000089785 ENSMUST00000162199 Slc25a5-ps transcribed_processed_pseudogene Interval_19591 chr10 104513492 104513680 + 0 NA Intergenic Intergenic -42379 ENSMUSG00000089182.1 ENSMUSG00000089182 ENSMUST00000158557 Gm22945 snRNA Interval_27125 chr11 63157683 63158470 + 0 NA intron (ENSMUSG00000018217.12, intron 4 of 4) protein_coding-intron (ENSMUSG00000018217.12, intron 4 of 4) -15838 ENSMUSG00000085532.1 ENSMUSG00000085532 ENSMUST00000123420 B430319H21Rik lincRNA Interval_159420 chr8 94491891 94493496 + 0 NA intron (ENSMUSG00000074151.13, intron 23 of 52) protein_coding-intron (ENSMUSG00000074151.13, intron 19 of 48) -12353 ENSMUSG00000098511.1 ENSMUSG00000098511 ENSMUST00000184542 Mir7072 miRNA Interval_62932 chr15 98001320 98002218 + 0 NA exon (ENSMUSG00000022483.17, exon 1 of 7) protein_coding-exon (ENSMUSG00000022483.17, exon 1 of 7) 2722 ENSMUSG00000022483.17 ENSMUSG00000022483 ENSMUST00000230148 Col2a1 protein_coding Interval_40891 chr12 109145404 109145961 + 0 NA Intergenic Intergenic 47455 ENSMUSG00000113306.1 ENSMUSG00000113306 ENSMUST00000223357 Mif-ps7 processed_pseudogene Interval_165570 chr9 49606407 49606615 + 0 NA intron (ENSMUSG00000039542.16, intron 1 of 17) protein_coding-intron (ENSMUSG00000039542.16, intron 1 of 15) 88223 ENSMUSG00000079564.3 ENSMUSG00000079564 ENSMUST00000215070 Gm11149 antisense Interval_34829 chr12 12331480 12331727 + 0 NA intron (ENSMUSG00000020589.17, intron 3 of 12) protein_coding-intron (ENSMUSG00000020589.17, intron 2 of 11) 61012 ENSMUSG00000114136.1 ENSMUSG00000114136 ENSMUST00000220545 4921511I17Rik antisense Interval_42479 chr13 14003851 14005191 + 0 NA TTS (ENSMUSG00000039233.12) protein_coding-TTS (ENSMUSG00000039233.12) 4982 ENSMUSG00000039233.12 ENSMUSG00000039233 ENSMUST00000160776 Tbce protein_coding Interval_10769 chr1 174501642 174503833 + 0 NA exon (ENSMUSG00000028354.13, exon 1 of 18) protein_coding-exon (ENSMUSG00000028354.13, exon 1 of 18) 60655 ENSMUSG00000066671.4 ENSMUSG00000066671 ENSMUST00000085861 Olfr220 protein_coding Interval_79015 chr18 23954227 23955280 + 0 NA promoter-TSS (ENSMUSG00000024276.7) protein_coding-promoter-TSS (ENSMUSG00000024276.7) 48 ENSMUSG00000024276.7 ENSMUSG00000024276 ENSMUST00000223595 Zfp397 protein_coding Interval_132618 chr5 146771927 146772649 + 0 NA intron (ENSMUSG00000029640.17, intron 1 of 8) protein_coding-intron (ENSMUSG00000029640.17, intron 1 of 8) -13840 ENSMUSG00000029640.17 ENSMUSG00000029640 ENSMUST00000124009 Usp12 protein_coding Interval_106910 chr3 101805205 101806816 + 0 NA Intergenic Intergenic 42949 ENSMUSG00000044313.13 ENSMUSG00000044313 ENSMUST00000118411 Mab21l3 protein_coding Interval_152107 chr7 129429865 129430737 + 0 NA Intergenic Intergenic -27211 ENSMUSG00000108713.1 ENSMUSG00000108713 ENSMUST00000206093 Gm33027 lincRNA Interval_88143 chr19 59521855 59522388 + 0 NA intron (ENSMUSG00000100119.1, intron 2 of 4) lincRNA-intron (ENSMUSG00000100119.1, intron 2 of 4) -18330 ENSMUSG00000118118.1 ENSMUSG00000118118 ENSMUST00000238140 Gm18161 processed_pseudogene Interval_120136 chr4 142903167 142903769 + 0 NA intron (ENSMUSG00000110067.2, intron 1 of 1) protein_coding-intron (ENSMUSG00000110067.2, intron 1 of 2) 112660 ENSMUSG00000103678.1 ENSMUSG00000103678 ENSMUST00000193751 Gm37624 TEC Interval_92395 chr2 59490155 59490645 + 0 NA intron (ENSMUSG00000026989.5, intron 1 of 4) protein_coding-intron (ENSMUSG00000026989.5, intron 1 of 3) 5731 ENSMUSG00000026989.5 ENSMUSG00000026989 ENSMUST00000144415 Dapl1 protein_coding Interval_51873 chr14 33228315 33228977 + 0 NA intron (ENSMUSG00000063506.14, intron 2 of 10) protein_coding-intron (ENSMUSG00000063506.14, intron 2 of 10) -7715 ENSMUSG00000115597.1 ENSMUSG00000115597 ENSMUST00000226933 Gm49030 antisense Interval_162147 chr8 125513259 125514399 + 0 NA intron (ENSMUSG00000001995.9, intron 2 of 22) protein_coding-intron (ENSMUSG00000001995.9, intron 2 of 21) 55979 ENSMUSG00000001995.9 ENSMUSG00000001995 ENSMUST00000212604 Sipa1l2 protein_coding Interval_109846 chr3 148905764 148906674 + 0 NA intron (ENSMUSG00000028184.12, intron 2 of 19) protein_coding-intron (ENSMUSG00000028184.12, intron 2 of 2) -82933 ENSMUSG00000104786.1 ENSMUSG00000104786 ENSMUST00000196445 Gm43573 antisense Interval_121253 chr4 154424701 154425768 + 0 NA intron (ENSMUSG00000039410.16, intron 3 of 15) protein_coding-intron (ENSMUSG00000039410.16, intron 3 of 16) 89107 ENSMUSG00000097871.1 ENSMUSG00000097871 ENSMUST00000181143 B230104I21Rik lincRNA Interval_142016 chr6 136554893 136555892 + 0 NA TTS (ENSMUSG00000030213.12) protein_coding-TTS (ENSMUSG00000030213.12) -36361 ENSMUSG00000107702.1 ENSMUSG00000107702 ENSMUST00000204157 Gm44140 bidirectional_promoter_lncRNA Interval_122552 chr5 23768796 23769467 + 0 NA intron (ENSMUSG00000057541.14, intron 3 of 5) protein_coding-intron (ENSMUSG00000057541.14, intron 4 of 15) 6537 ENSMUSG00000057541.14 ENSMUSG00000057541 ENSMUST00000195909 Pus7 protein_coding Interval_60028 chr15 64082262 64083163 + 0 NA Intergenic Intergenic -15605 ENSMUSG00000093695.2 ENSMUSG00000093695 ENSMUST00000228817 Gm20717 antisense Interval_131709 chr5 139442414 139443009 + 0 NA promoter-TSS (ENSMUSG00000095016.1) snRNA-promoter-TSS (ENSMUSG00000095016.1) -888 ENSMUSG00000095016.1 ENSMUSG00000095016 ENSMUST00000177923 Gm26285 snRNA Interval_73325 chr17 36219266 36219754 + 0 NA Intergenic Intergenic -3098 ENSMUSG00000092362.3 ENSMUSG00000092362 ENSMUST00000173047 Gm20392 unprocessed_pseudogene Interval_161613 chr8 121570134 121571500 + 0 NA intron (ENSMUSG00000052934.14, intron 1 of 4) protein_coding-intron (ENSMUSG00000052934.14, intron 1 of 8) 7930 ENSMUSG00000052934.14 ENSMUSG00000052934 ENSMUST00000181663 Fbxo31 protein_coding Interval_53983 chr14 64055177 64055583 + 0 NA Intergenic Intergenic 25507 ENSMUSG00000046049.7 ENSMUSG00000046049 ENSMUST00000224314 Rp1l1 protein_coding Interval_42410 chr13 13349437 13349752 + 0 NA intron (ENSMUSG00000110123.1, intron 9 of 9) unprocessed_pseudogene-intron (ENSMUSG00000110123.1, intron 9 of 9) 20110 ENSMUSG00000084734.1 ENSMUSG00000084734 ENSMUST00000122785 Gm25804 snoRNA Interval_117056 chr4 119259030 119260114 + 0 NA exon (ENSMUSG00000066058.11, exon 4 of 4) protein_coding-exon (ENSMUSG00000066058.11, exon 4 of 4) -2597 ENSMUSG00000085203.1 ENSMUSG00000085203 ENSMUST00000150252 Gm12927 antisense Interval_54751 chr14 74737027 74737767 + 0 NA intron (ENSMUSG00000021996.16, intron 2 of 4) protein_coding-intron (ENSMUSG00000021996.16, intron 2 of 8) 5078 ENSMUSG00000021996.16 ENSMUSG00000021996 ENSMUST00000176726 Esd protein_coding Interval_93087 chr2 70013676 70014612 + 0 NA intron (ENSMUSG00000044308.17, intron 2 of 3) protein_coding-intron (ENSMUSG00000044308.17, intron 33 of 38) -24767 ENSMUSG00000086132.1 ENSMUSG00000086132 ENSMUST00000140978 Gm13631 processed_transcript Interval_126322 chr5 86649126 86649764 + 0 NA Intergenic Intergenic -17062 ENSMUSG00000048764.16 ENSMUSG00000048764 ENSMUST00000173259 Tmprss11f protein_coding Interval_171187 chr9 115048795 115049619 + 0 NA intron (ENSMUSG00000040875.12, intron 1 of 11) protein_coding-intron (ENSMUSG00000040875.12, intron 1 of 11) 50591 ENSMUSG00000040875.12 ENSMUSG00000040875 ENSMUST00000182413 Osbpl10 protein_coding Interval_53103 chr14 54475863 54477159 + 0 NA promoter-TSS (ENSMUSG00000022176.11) protein_coding-promoter-TSS (ENSMUSG00000022176.11) 271 ENSMUSG00000022176.11 ENSMUSG00000022176 ENSMUST00000168930 Rem2 protein_coding Interval_137249 chr6 70752485 70752900 + 0 NA Intergenic Intergenic 26257 ENSMUSG00000076609.2 ENSMUSG00000076609 ENSMUST00000103410 Igkc IG_C_gene Interval_66239 chr16 32531699 32533580 + 0 NA intron (ENSMUSG00000052363.8, intron 2 of 3) protein_coding-intron (ENSMUSG00000052363.8, intron 2 of 3) -19103 ENSMUSG00000116957.1 ENSMUSG00000116957 ENSMUST00000232103 Gm34680 lincRNA Interval_34988 chr12 16475985 16478325 + 0 NA Intergenic Intergenic 133811 ENSMUSG00000020593.16 ENSMUSG00000020593 ENSMUST00000221146 Lpin1 protein_coding Interval_24962 chr11 42083289 42084587 + 0 NA Intergenic Intergenic 98166 ENSMUSG00000010803.13 ENSMUSG00000010803 ENSMUST00000206085 Gabra1 protein_coding Interval_34919 chr12 13456417 13456616 + 0 NA promoter-TSS (ENSMUSG00000071414.5) processed_pseudogene-promoter-TSS (ENSMUSG00000071414.5) -546 ENSMUSG00000071414.5 ENSMUSG00000071414 ENSMUST00000166583 Gm6736 processed_pseudogene Interval_147105 chr7 63084172 63085189 + 0 NA Intergenic Intergenic 51610 ENSMUSG00000109057.1 ENSMUSG00000109057 ENSMUST00000207503 Gm44741 TEC Interval_133684 chr6 8648093 8648798 + 0 NA promoter-TSS (ENSMUSG00000062995.12) protein_coding-promoter-TSS (ENSMUSG00000062995.12) -51456 ENSMUSG00000107724.1 ENSMUSG00000107724 ENSMUST00000204813 Gm16042 processed_pseudogene Interval_139902 chr6 112552689 112553735 + 0 NA Intergenic Intergenic -10430 ENSMUSG00000083443.1 ENSMUSG00000083443 ENSMUST00000120088 Gm15519 processed_pseudogene Interval_58904 chr15 39872070 39872656 + 0 NA exon (ENSMUSG00000022305.13, exon 7 of 7) protein_coding-exon (ENSMUSG00000022305.13, exon 7 of 7) 71327 ENSMUSG00000022305.13 ENSMUSG00000022305 ENSMUST00000146714 Lrp12 protein_coding Interval_38503 chr12 79686370 79687426 + 0 NA intron (ENSMUSG00000059060.15, intron 8 of 10) protein_coding-intron (ENSMUSG00000059060.15, intron 8 of 10) 238596 ENSMUSG00000112765.1 ENSMUSG00000112765 ENSMUST00000219857 9430078K24Rik lincRNA Interval_23820 chr11 26568724 26569366 + 0 NA intron (ENSMUSG00000064090.14, intron 2 of 4) protein_coding-intron (ENSMUSG00000064090.14, intron 2 of 12) -24181 ENSMUSG00000068314.5 ENSMUSG00000068314 ENSMUST00000089614 Gm6899 TEC Interval_171589 chr9 119413173 119413591 + 0 NA intron (ENSMUSG00000061393.14, intron 1 of 10) protein_coding-intron (ENSMUSG00000061393.14, intron 1 of 9) -4366 ENSMUSG00000111204.1 ENSMUSG00000111204 ENSMUST00000217028 Gm47320 antisense Interval_146287 chr7 45136310 45136953 + 0 NA promoter-TSS (ENSMUSG00000110206.1) protein_coding-promoter-TSS (ENSMUSG00000110206.1) -400 ENSMUSG00000089989.10 ENSMUSG00000089989 ENSMUST00000209467 Gm45713 protein_coding Interval_76358 chr17 79431661 79431917 + 0 NA Intergenic Intergenic 77090 ENSMUSG00000118651.1 ENSMUSG00000118651 ENSMUST00000239444 CT030740.1 antisense Interval_25858 chr11 52205713 52206235 + 0 NA Intergenic Intergenic 8013 ENSMUSG00000060170.3 ENSMUSG00000060170 ENSMUST00000075844 Olfr1371 protein_coding Interval_96098 chr2 119737042 119737482 + 0 NA Intergenic Intergenic 3694 ENSMUSG00000064722.1 ENSMUSG00000064722 ENSMUST00000082788 Gm25857 snoRNA Interval_113626 chr4 57091299 57092286 + 0 NA intron (ENSMUSG00000028434.12, intron 1 of 9) protein_coding-intron (ENSMUSG00000028434.12, intron 2 of 15) -21233 ENSMUSG00000028434.12 ENSMUSG00000028434 ENSMUST00000133859 Epb41l4b protein_coding Interval_51512 chr14 29267680 29268128 + 0 NA intron (ENSMUSG00000021991.9, intron 7 of 15) protein_coding-intron (ENSMUSG00000021991.9, intron 11 of 37) -2383 ENSMUSG00000114758.1 ENSMUSG00000114758 ENSMUST00000225833 Gm48005 processed_pseudogene Interval_118257 chr4 129854546 129855701 + 0 NA promoter-TSS (ENSMUSG00000073753.4) pseudogene-promoter-TSS (ENSMUSG00000073753.4) 52 ENSMUSG00000073753.4 ENSMUSG00000073753 ENSMUST00000097869 Gm10571 pseudogene Interval_160987 chr8 116673187 116674885 + 0 NA intron (ENSMUSG00000031758.10, intron 1 of 6) protein_coding-intron (ENSMUSG00000031758.10, intron 1 of 6) 58955 ENSMUSG00000031758.10 ENSMUSG00000031758 ENSMUST00000109102 Cdyl2 protein_coding Interval_49156 chr13 108795704 108796699 + 0 NA intron (ENSMUSG00000021699.17, intron 3 of 3) protein_coding-intron (ENSMUSG00000021699.17, intron 1 of 16) -63965 ENSMUSG00000021699.17 ENSMUSG00000021699 ENSMUST00000155459 Pde4d protein_coding Interval_62535 chr15 94479721 94479971 + 0 NA Intergenic Intergenic 63647 ENSMUSG00000033356.3 ENSMUSG00000033356 ENSMUST00000134061 Pus7l protein_coding Interval_160604 chr8 110976002 110977610 + 0 NA intron (ENSMUSG00000015023.7, intron 10 of 11) protein_coding-intron (ENSMUSG00000015023.7, intron 10 of 11) 20964 ENSMUSG00000015023.7 ENSMUSG00000015023 ENSMUST00000173183 Ddx19a protein_coding Interval_82556 chr18 75145414 75146222 + 0 NA intron (ENSMUSG00000035765.10, intron 13 of 16) protein_coding-intron (ENSMUSG00000035765.10, intron 13 of 16) 20393 ENSMUSG00000035765.10 ENSMUSG00000035765 ENSMUST00000236840 Dym protein_coding Interval_124023 chr5 37336392 37337212 + 0 NA promoter-TSS (ENSMUSG00000029122.11) protein_coding-promoter-TSS (ENSMUSG00000029122.11) -18430 ENSMUSG00000029122.11 ENSMUSG00000029122 ENSMUST00000133376 Evc protein_coding Interval_129013 chr5 116715131 116715393 + 0 NA intron (ENSMUSG00000106909.1, intron 2 of 2) lincRNA-intron (ENSMUSG00000106909.1, intron 2 of 2) -81698 ENSMUSG00000107369.1 ENSMUSG00000107369 ENSMUST00000201478 Gstm2-ps1 processed_pseudogene Interval_97593 chr2 140210016 140210314 + 0 NA Intergenic Intergenic 39135 ENSMUSG00000027384.6 ENSMUSG00000027384 ENSMUST00000125913 Ndufaf5 protein_coding Interval_108908 chr3 133203131 133203334 + 0 NA intron (ENSMUSG00000040969.14, intron 2 of 3) protein_coding-intron (ENSMUSG00000040969.14, intron 2 of 13) 31717 ENSMUSG00000040969.14 ENSMUSG00000040969 ENSMUST00000161932 Arhgef38 protein_coding Interval_26655 chr11 59498404 59498749 + 0 NA TTS (ENSMUSG00000020472.14) protein_coding-TTS (ENSMUSG00000020472.14) -7109 ENSMUSG00000072893.12 ENSMUSG00000072893 ENSMUST00000130570 4933439C10Rik processed_transcript Interval_31258 chr11 99170412 99171223 + 0 NA Intergenic Intergenic -15740 ENSMUSG00000037944.8 ENSMUSG00000037944 ENSMUST00000103134 Ccr7 protein_coding Interval_74908 chr17 57218931 57220181 + 0 NA exon (ENSMUSG00000024164.15, exon 19 of 41) protein_coding-exon (ENSMUSG00000024164.15, exon 19 of 41) -2328 ENSMUSG00000099066.1 ENSMUSG00000099066 ENSMUST00000184453 Mir6978 miRNA Interval_87354 chr19 47902830 47903880 + 0 NA intron (ENSMUSG00000117975.1, intron 2 of 2) protein_coding-intron (ENSMUSG00000044948.17, intron 1 of 13) 15895 ENSMUSG00000117975.1 ENSMUSG00000117975 ENSMUST00000237029 Itprip protein_coding Interval_103879 chr3 54353065 54353642 + 0 NA Intergenic Intergenic -29754 ENSMUSG00000027750.16 ENSMUSG00000027750 ENSMUST00000150868 Postn protein_coding Interval_96541 chr2 125555369 125556208 + 0 NA Intergenic Intergenic -49716 ENSMUSG00000027204.13 ENSMUSG00000027204 ENSMUST00000148272 Fbn1 protein_coding Interval_163094 chr9 15241618 15241868 + 0 NA intron (ENSMUSG00000031937.7, intron 1 of 3) protein_coding-intron (ENSMUSG00000031937.7, intron 1 of 3) 2698 ENSMUSG00000031937.7 ENSMUSG00000031937 ENSMUST00000034413 Vstm5 protein_coding Interval_44411 chr13 44697058 44697857 + 0 NA Intergenic Intergenic -33913 ENSMUSG00000038518.15 ENSMUSG00000038518 ENSMUST00000173003 Jarid2 protein_coding Interval_94577 chr2 92392028 92392874 + 0 NA exon (ENSMUSG00000027223.15, exon 1 of 12) protein_coding-exon (ENSMUSG00000027223.15, exon 1 of 12) 281 ENSMUSG00000027223.15 ENSMUSG00000027223 ENSMUST00000149653 Mapk8ip1 protein_coding Interval_25002 chr11 42899653 42900423 + 0 NA Intergenic Intergenic 2543 ENSMUSG00000084627.1 ENSMUSG00000084627 ENSMUST00000122678 Gm25543 misc_RNA Interval_107550 chr3 108433324 108434314 + 0 NA TTS (ENSMUSG00000068739.13) protein_coding-TTS (ENSMUSG00000068739.13) -7511 ENSMUSG00000089188.1 ENSMUSG00000089188 ENSMUST00000158563 Gm22942 snoRNA Interval_167890 chr9 73597338 73597621 + 0 NA intron (ENSMUSG00000062151.13, intron 19 of 32) protein_coding-intron (ENSMUSG00000062151.13, intron 18 of 31) -43609 ENSMUSG00000103832.1 ENSMUSG00000103832 ENSMUST00000195250 Gm37611 TEC Interval_137379 chr6 71803990 71804442 + 0 NA TTS (ENSMUSG00000108594.1) TEC-TTS (ENSMUSG00000108594.1) 1328 ENSMUSG00000108594.1 ENSMUSG00000108594 ENSMUST00000205395 Gm44770 TEC Interval_106969 chr3 102249488 102249971 + 0 NA promoter-TSS (ENSMUSG00000105151.1) lincRNA-promoter-TSS (ENSMUSG00000105151.1) 60 ENSMUSG00000105151.1 ENSMUSG00000105151 ENSMUST00000198375 Gm43241 lincRNA Interval_8856 chr1 151570599 151572067 + 0 NA promoter-TSS (ENSMUSG00000026483.13) protein_coding-promoter-TSS (ENSMUSG00000026483.13) -40 ENSMUSG00000026483.13 ENSMUSG00000026483 ENSMUST00000086267 Fam129a protein_coding Interval_97796 chr2 144139328 144139642 + 0 NA intron (ENSMUSG00000074758.10, intron 1 of 2) lincRNA-intron (ENSMUSG00000074758.10, intron 2 of 3) 3888 ENSMUSG00000082480.1 ENSMUSG00000082480 ENSMUST00000118911 Gm11687 processed_pseudogene Interval_13524 chr10 19123775 19124419 + 0 NA TTS (ENSMUSG00000111320.1) processed_pseudogene-TTS (ENSMUSG00000111320.1) 890 ENSMUSG00000111320.1 ENSMUSG00000111320 ENSMUST00000217107 Gm48546 processed_pseudogene Interval_117014 chr4 119019248 119019823 + 0 NA Intergenic Intergenic -19050 ENSMUSG00000087464.1 ENSMUSG00000087464 ENSMUST00000150754 Gm12862 lincRNA Interval_39377 chr12 86983370 86984402 + 0 NA promoter-TSS (ENSMUSG00000048483.6) protein_coding-promoter-TSS (ENSMUSG00000048483.6) -51 ENSMUSG00000048483.6 ENSMUSG00000048483 ENSMUST00000095521 Zdhhc22 protein_coding Interval_97586 chr2 140162857 140163476 + 0 NA intron (ENSMUSG00000045624.15, intron 3 of 13) protein_coding-intron (ENSMUSG00000045624.15, intron 3 of 13) -7861 ENSMUSG00000045624.15 ENSMUSG00000045624 ENSMUST00000141086 Esf1 protein_coding Interval_164898 chr9 42897429 42898837 + 0 NA intron (ENSMUSG00000032017.14, intron 1 of 20) protein_coding-intron (ENSMUSG00000032017.14, intron 1 of 20) -36004 ENSMUSG00000076355.2 ENSMUSG00000076355 ENSMUST00000102400 Gm27509 miRNA Interval_68017 chr16 63806486 63807273 + 0 NA intron (ENSMUSG00000052504.7, intron 2 of 3) protein_coding-intron (ENSMUSG00000052504.7, intron 2 of 16) 57278 ENSMUSG00000052504.7 ENSMUSG00000052504 ENSMUST00000232370 Epha3 protein_coding Interval_117796 chr4 126272322 126272780 + 0 NA intron (ENSMUSG00000028847.8, intron 1 of 2) protein_coding-intron (ENSMUSG00000028847.8, intron 1 of 4) 10151 ENSMUSG00000028847.8 ENSMUSG00000028847 ENSMUST00000126786 Trappc3 protein_coding Interval_56823 chr14 122280395 122281500 + 0 NA intron (ENSMUSG00000025545.10, intron 1 of 7) protein_coding-intron (ENSMUSG00000025545.10, intron 1 of 7) 22906 ENSMUSG00000025545.10 ENSMUSG00000025545 ENSMUST00000226136 Clybl protein_coding Interval_44833 chr13 48970650 48971323 + 0 NA Intergenic Intergenic -2969 ENSMUSG00000038014.7 ENSMUSG00000038014 ENSMUST00000060805 Fam120a protein_coding Interval_94512 chr2 91778709 91779644 + 0 NA intron (ENSMUSG00000040506.16, intron 7 of 7) protein_coding-intron (ENSMUSG00000040506.16, intron 7 of 16) 48994 ENSMUSG00000040506.16 ENSMUSG00000040506 ENSMUST00000142224 Ambra1 protein_coding Interval_145554 chr7 35584808 35586820 + 0 NA promoter-TSS (ENSMUSG00000034867.16) protein_coding-promoter-TSS (ENSMUSG00000034867.16) -232 ENSMUSG00000056043.5 ENSMUSG00000056043 ENSMUST00000069912 Rgs9bp protein_coding Interval_4359 chr1 72978007 72978325 + 0 NA Intergenic Intergenic 37743 ENSMUSG00000026182.6 ENSMUSG00000026182 ENSMUST00000027374 Tnp1 protein_coding Interval_74230 chr17 47595400 47597207 + 0 NA promoter-TSS (ENSMUSG00000034165.16) protein_coding-promoter-TSS (ENSMUSG00000034165.16) -21 ENSMUSG00000034165.16 ENSMUSG00000034165 ENSMUST00000183206 Ccnd3 protein_coding Interval_131387 chr5 136850321 136850585 + 0 NA intron (ENSMUSG00000004415.15, intron 1 of 5) protein_coding-intron (ENSMUSG00000004415.15, intron 1 of 12) -12144 ENSMUSG00000004415.15 ENSMUSG00000004415 ENSMUST00000140245 Col26a1 protein_coding Interval_126337 chr5 86803686 86805287 + 0 NA promoter-TSS (ENSMUSG00000035851.14) protein_coding-promoter-TSS (ENSMUSG00000035851.14) -1925 ENSMUSG00000035851.14 ENSMUSG00000035851 ENSMUST00000123625 Ythdc1 protein_coding Interval_151258 chr7 120361075 120361609 + 0 NA intron (ENSMUSG00000054746.18, intron 14 of 14) protein_coding-intron (ENSMUSG00000054746.18, intron 14 of 30) 32672 ENSMUSG00000054746.18 ENSMUSG00000054746 ENSMUST00000076272 Abca15 protein_coding Interval_38566 chr12 80160852 80161072 + 0 NA Intergenic Intergenic -28366 ENSMUSG00000097729.2 ENSMUSG00000097729 ENSMUST00000180643 2310015A10Rik processed_transcript Interval_140880 chr6 122557101 122557424 + 0 NA intron (ENSMUSG00000040627.14, intron 1 of 4) protein_coding-intron (ENSMUSG00000040627.14, intron 1 of 4) -3223 ENSMUSG00000040627.14 ENSMUSG00000040627 ENSMUST00000160685 Aicda protein_coding Interval_5351 chr1 87797600 87797979 + 0 NA Intergenic Intergenic -5891 ENSMUSG00000056055.13 ENSMUSG00000056055 ENSMUST00000145385 Sag protein_coding Interval_4753 chr1 78367989 78368215 + 0 NA intron (ENSMUSG00000032908.9, intron 2 of 4) protein_coding-intron (ENSMUSG00000032908.9, intron 2 of 4) -7512 ENSMUSG00000102945.1 ENSMUSG00000102945 ENSMUST00000191857 Gm37884 TEC Interval_119873 chr4 140623984 140625282 + 0 NA intron (ENSMUSG00000040964.16, intron 1 of 27) protein_coding-intron (ENSMUSG00000040964.16, intron 1 of 27) -7568 ENSMUSG00000040964.16 ENSMUSG00000040964 ENSMUST00000154979 Arhgef10l protein_coding Interval_62383 chr15 91376497 91376805 + 0 NA intron (ENSMUSG00000036298.10, intron 4 of 9) protein_coding-intron (ENSMUSG00000036298.10, intron 4 of 9) 35566 ENSMUSG00000036298.10 ENSMUSG00000036298 ENSMUST00000109282 Slc2a13 protein_coding Interval_154330 chr8 14638610 14640691 + 0 NA intron (ENSMUSG00000047495.15, intron 3 of 14) protein_coding-intron (ENSMUSG00000047495.15, intron 3 of 14) 107777 ENSMUSG00000084945.1 ENSMUSG00000084945 ENSMUST00000155211 C030037F17Rik antisense Interval_46159 chr13 62105505 62106690 + 0 NA intron (ENSMUSG00000113566.1, intron 1 of 3) lincRNA-intron (ENSMUSG00000114036.1, intron 1 of 1) 8327 ENSMUSG00000113566.1 ENSMUSG00000113566 ENSMUST00000221554 Gm40977 lincRNA Interval_166987 chr9 64314533 64315395 + 0 NA intron (ENSMUSG00000032396.17, intron 9 of 16) protein_coding-intron (ENSMUSG00000032396.17, intron 9 of 16) 19033 ENSMUSG00000088254.1 ENSMUSG00000088254 ENSMUST00000157629 Gm24289 scaRNA Interval_136427 chr6 54367398 54368522 + 0 NA intron (ENSMUSG00000073067.10, intron 3 of 13) processed_transcript-intron (ENSMUSG00000073067.10, intron 3 of 13) -40619 ENSMUSG00000073067.10 ENSMUSG00000073067 ENSMUST00000135612 9130019P16Rik processed_transcript Interval_151981 chr7 127935258 127936534 + 0 NA promoter-TSS (ENSMUSG00000070371.11) protein_coding-promoter-TSS (ENSMUSG00000070371.11) -446 ENSMUSG00000070371.11 ENSMUSG00000070371 ENSMUST00000144192 Prss36 protein_coding Interval_47775 chr13 92580361 92580872 + 0 NA Intergenic Intergenic -4444 ENSMUSG00000046957.5 ENSMUSG00000046957 ENSMUST00000050658 Spz1 protein_coding Interval_11061 chr1 179072133 179073314 + 0 NA intron (ENSMUSG00000055067.15, intron 4 of 7) protein_coding-intron (ENSMUSG00000055067.15, intron 5 of 8) -155109 ENSMUSG00000089713.1 ENSMUSG00000089713 ENSMUST00000162545 Gm16564 antisense Interval_23497 chr11 22963752 22963918 + 0 NA intron (ENSMUSG00000098650.1, intron 1 of 2) protein_coding-intron (ENSMUSG00000051355.18, intron 2 of 3) 9024 ENSMUSG00000051355.18 ENSMUSG00000051355 ENSMUST00000093270 Commd1 protein_coding Interval_115160 chr4 92484010 92484273 + 0 NA Intergenic Intergenic -44410 ENSMUSG00000085209.1 ENSMUSG00000085209 ENSMUST00000130501 Gm12637 lincRNA Interval_11478 chr1 182112283 182113104 + 0 NA Intergenic Intergenic 15496 ENSMUSG00000103018.1 ENSMUSG00000103018 ENSMUST00000194902 Gm17968 processed_pseudogene Interval_86832 chr19 44232163 44232366 + 0 NA intron (ENSMUSG00000117900.1, intron 1 of 1) protein_coding-intron (ENSMUSG00000025202.8, intron 2 of 5) -5551 ENSMUSG00000025202.8 ENSMUSG00000025202 ENSMUST00000237324 Scd3 protein_coding Interval_46572 chr13 67278391 67279397 + 0 NA promoter-TSS (ENSMUSG00000055480.7) protein_coding-promoter-TSS (ENSMUSG00000055480.7) 298 ENSMUSG00000114442.1 ENSMUSG00000114442 ENSMUST00000224856 F630042J09Rik lincRNA Interval_137045 chr6 66931219 66932038 + 0 NA intron (ENSMUSG00000036402.13, intron 2 of 3) protein_coding-intron (ENSMUSG00000036402.13, intron 2 of 4) 34737 ENSMUSG00000036402.13 ENSMUSG00000036402 ENSMUST00000204862 Gng12 protein_coding Interval_107756 chr3 113244128 113244586 + 0 NA Intergenic Intergenic 14294 ENSMUSG00000074268.4 ENSMUSG00000074268 ENSMUST00000144352 Amy2a5 protein_coding Interval_122994 chr5 28245352 28245629 + 0 NA intron (ENSMUSG00000044681.19, intron 1 of 3) protein_coding-intron (ENSMUSG00000044681.19, intron 1 of 3) 316 ENSMUSG00000044681.19 ENSMUSG00000044681 ENSMUST00000141196 Cnpy1 protein_coding Interval_123976 chr5 36966750 36967194 + 0 NA exon (ENSMUSG00000039474.13, exon 8 of 8) protein_coding-exon (ENSMUSG00000039474.13, exon 8 of 8) 9984 ENSMUSG00000039474.13 ENSMUSG00000039474 ENSMUST00000167937 Wfs1 protein_coding Interval_109706 chr3 146149349 146150927 + 0 NA promoter-TSS (ENSMUSG00000011008.13) protein_coding-promoter-TSS (ENSMUSG00000011008.13) 11058 ENSMUSG00000036853.5 ENSMUSG00000036853 ENSMUST00000146689 Mcoln3 protein_coding Interval_104426 chr3 65554447 65554643 + 0 NA exon (ENSMUSG00000034640.9, exon 6 of 6) protein_coding-exon (ENSMUSG00000034640.9, exon 6 of 6) 8505 ENSMUSG00000034640.9 ENSMUSG00000034640 ENSMUST00000154094 Tiparp protein_coding Interval_15041 chr10 42160564 42160877 + 0 NA Intergenic Intergenic 97646 ENSMUSG00000048756.11 ENSMUSG00000048756 ENSMUST00000105501 Foxo3 protein_coding Interval_140650 chr6 120309671 120311270 + 0 NA Intergenic Intergenic -15911 ENSMUSG00000041372.10 ENSMUSG00000041372 ENSMUST00000212457 B4galnt3 protein_coding Interval_38138 chr12 75886004 75886929 + 0 NA intron (ENSMUSG00000063450.14, intron 6 of 12) protein_coding-intron (ENSMUSG00000063450.14, intron 6 of 115) -22637 ENSMUSG00000092922.1 ENSMUSG00000092922 ENSMUST00000175181 Mir5101 miRNA Interval_85128 chr19 23065271 23066284 + 0 NA intron (ENSMUSG00000097930.2, intron 1 of 6) lincRNA-intron (ENSMUSG00000097930.2, intron 1 of 6) 4323 ENSMUSG00000118155.1 ENSMUSG00000118155 ENSMUST00000235686 Gm50136 lincRNA Interval_46917 chr13 73385599 73385924 + 0 NA Intergenic Intergenic -38377 ENSMUSG00000113346.2 ENSMUSG00000113346 ENSMUST00000223470 Eprn lincRNA Interval_102539 chr3 27600517 27600880 + 0 NA intron (ENSMUSG00000039286.12, intron 4 of 26) protein_coding-intron (ENSMUSG00000039286.12, intron 3 of 25) -15703 ENSMUSG00000092695.1 ENSMUSG00000092695 ENSMUST00000174954 Mir3092 miRNA Interval_150701 chr7 113581959 113582320 + 0 NA Intergenic Intergenic -10723 ENSMUSG00000109968.1 ENSMUSG00000109968 ENSMUST00000211320 Gm45612 processed_pseudogene Interval_162012 chr8 124414951 124416881 + 0 NA intron (ENSMUSG00000050751.14, intron 1 of 6) protein_coding-intron (ENSMUSG00000050751.14, intron 1 of 6) 23742 ENSMUSG00000050751.14 ENSMUSG00000050751 ENSMUST00000140126 Pgbd5 protein_coding Interval_5200 chr1 86427585 86427899 + 0 NA exon (ENSMUSG00000036574.5, exon 1 of 1) protein_coding-exon (ENSMUSG00000036574.5, exon 1 of 1) 1413 ENSMUSG00000036574.5 ENSMUSG00000036574 ENSMUST00000046004 Tex44 protein_coding Interval_161553 chr8 121159091 121159307 + 0 NA intron (ENSMUSG00000092329.1, intron 1 of 15) protein_coding-intron (ENSMUSG00000092329.1, intron 1 of 15) 18256 ENSMUSG00000103830.1 ENSMUSG00000103830 ENSMUST00000191778 Gm37609 TEC Interval_117924 chr4 127095430 127095914 + 0 NA intron (ENSMUSG00000042408.13, intron 4 of 8) protein_coding-intron (ENSMUSG00000042408.13, intron 5 of 14) 12899 ENSMUSG00000088982.1 ENSMUSG00000088982 ENSMUST00000158357 Gm25600 snRNA Interval_29575 chr11 85045128 85045632 + 0 NA intron (ENSMUSG00000000804.14, intron 11 of 33) protein_coding-intron (ENSMUSG00000000804.14, intron 11 of 33) 27615 ENSMUSG00000082917.1 ENSMUSG00000082917 ENSMUST00000121509 Gm11440 processed_pseudogene Interval_71410 chr17 23592337 23593271 + 0 NA intron (ENSMUSG00000062012.14, intron 1 of 5) protein_coding-intron (ENSMUSG00000062012.14, intron 1 of 5) -8058 ENSMUSG00000023902.18 ENSMUSG00000023902 ENSMUST00000133749 Zscan10 protein_coding Interval_99762 chr2 164763590 164763901 + 0 NA intron (ENSMUSG00000017299.13, intron 10 of 12) protein_coding-intron (ENSMUSG00000017299.13, intron 10 of 12) 2086 ENSMUSG00000088226.1 ENSMUSG00000088226 ENSMUST00000157601 Gm22596 misc_RNA Interval_116326 chr4 109831356 109831704 + 0 NA intron (ENSMUSG00000010517.7, intron 9 of 18) protein_coding-intron (ENSMUSG00000010517.7, intron 9 of 18) -9255 ENSMUSG00000010517.7 ENSMUSG00000010517 ENSMUST00000155204 Faf1 protein_coding Interval_50236 chr14 10978010 10978225 + 0 NA intron (ENSMUSG00000060579.13, intron 2 of 9) protein_coding-intron (ENSMUSG00000060579.13, intron 2 of 9) -184073 ENSMUSG00000089785.2 ENSMUSG00000089785 ENSMUST00000162199 Slc25a5-ps transcribed_processed_pseudogene Interval_30252 chr11 92041848 92042014 + 0 NA Intergenic Intergenic -17518 ENSMUSG00000093113.1 ENSMUSG00000093113 ENSMUST00000175372 Gm22702 miRNA Interval_52273 chr14 41263498 41266813 + 0 NA Intergenic Intergenic -13650 ENSMUSG00000091110.1 ENSMUSG00000091110 ENSMUST00000172412 Gm2832 protein_coding Interval_70059 chr17 5060286 5061162 + 0 NA intron (ENSMUSG00000069729.14, intron 2 of 19) protein_coding-intron (ENSMUSG00000069729.14, intron 2 of 18) 51386 ENSMUSG00000081783.2 ENSMUSG00000081783 ENSMUST00000122283 Gm15599 processed_pseudogene Interval_62315 chr15 89889519 89889811 + 0 NA promoter-TSS (ENSMUSG00000096784.1) miRNA-promoter-TSS (ENSMUSG00000096784.1) -613 ENSMUSG00000096784.1 ENSMUSG00000096784 ENSMUST00000178305 Gm24643 miRNA Interval_34096 chr11 120501263 120501765 + 0 NA Intergenic Intergenic 3789 ENSMUSG00000025792.9 ENSMUSG00000025792 ENSMUST00000152187 Slc25a10 protein_coding Interval_166330 chr9 58378380 58379123 + 0 NA Intergenic Intergenic 8247 ENSMUSG00000100487.1 ENSMUSG00000100487 ENSMUST00000191141 1700072B07Rik lincRNA Interval_141378 chr6 127827583 127829042 + 0 NA Intergenic Intergenic -17594 ENSMUSG00000106862.1 ENSMUSG00000106862 ENSMUST00000201951 Gm42811 TEC Interval_69956 chr17 3490339 3490824 + 0 NA exon (ENSMUSG00000023800.15, exon 1 of 10) protein_coding-exon (ENSMUSG00000023800.15, exon 1 of 10) 8373 ENSMUSG00000023800.15 ENSMUSG00000023800 ENSMUST00000226434 Tiam2 protein_coding Interval_83937 chr19 5713696 5714193 + 0 NA intron (ENSMUSG00000024937.15, intron 12 of 18) protein_coding-intron (ENSMUSG00000024937.15, intron 12 of 18) 3759 ENSMUSG00000024937.15 ENSMUSG00000024937 ENSMUST00000237868 Ehbp1l1 protein_coding Interval_110632 chr4 5313042 5313284 + 0 NA Intergenic Intergenic 238060 ENSMUSG00000087099.1 ENSMUSG00000087099 ENSMUST00000131675 Gm11782 lincRNA Interval_100874 chr2 173048252 173048861 + 0 NA Intergenic Intergenic -13976 ENSMUSG00000087442.1 ENSMUSG00000087442 ENSMUST00000139677 Gm14453 antisense Interval_58868 chr15 39419005 39419203 + 0 NA intron (ENSMUSG00000037386.16, intron 1 of 2) protein_coding-intron (ENSMUSG00000037386.16, intron 3 of 26) -18134 ENSMUSG00000037386.16 ENSMUSG00000037386 ENSMUST00000226410 Rims2 protein_coding Interval_15522 chr10 50704355 50704712 + 0 NA intron (ENSMUSG00000038774.9, intron 16 of 41) protein_coding-intron (ENSMUSG00000038774.9, intron 16 of 41) 8061 ENSMUSG00000112927.1 ENSMUSG00000112927 ENSMUST00000217818 Gm48332 TEC Interval_141579 chr6 129575314 129575531 + 0 NA Intergenic Intergenic -7997 ENSMUSG00000050241.8 ENSMUSG00000050241 ENSMUST00000203865 Klre1 protein_coding Interval_113232 chr4 50791755 50791980 + 0 NA Intergenic Intergenic -398240 ENSMUSG00000084116.1 ENSMUSG00000084116 ENSMUST00000117147 Gm12460 processed_pseudogene Interval_164986 chr9 43675546 43675787 + 0 NA Intergenic Intergenic -7387 ENSMUSG00000110808.1 ENSMUSG00000110808 ENSMUST00000216789 Gm5364 processed_pseudogene Interval_78833 chr18 20888884 20889103 + 0 NA intron (ENSMUSG00000033382.15, intron 1 of 28) protein_coding-intron (ENSMUSG00000033382.15, intron 1 of 15) 7100 ENSMUSG00000033382.15 ENSMUSG00000033382 ENSMUST00000224530 Trappc8 protein_coding Interval_58567 chr15 36178995 36179784 + 0 NA promoter-TSS (ENSMUSG00000037617.12) protein_coding-promoter-TSS (ENSMUSG00000037617.12) 5379 ENSMUSG00000045996.12 ENSMUSG00000045996 ENSMUST00000057177 Polr2k protein_coding Interval_134884 chr6 33126274 33127404 + 0 NA Intergenic Intergenic -38090 ENSMUSG00000087777.1 ENSMUSG00000087777 ENSMUST00000157152 Gm22321 snRNA Interval_166846 chr9 63163843 63164231 + 0 NA exon (ENSMUSG00000058444.8, exon 22 of 22) protein_coding-exon (ENSMUSG00000058444.8, exon 22 of 22) -17026 ENSMUSG00000022245.15 ENSMUSG00000022245 ENSMUST00000055281 Skor1 protein_coding Interval_9940 chr1 164266063 164267215 + 0 NA Intergenic Intergenic -8946 ENSMUSG00000026578.6 ENSMUSG00000026578 ENSMUST00000027867 Ccdc181 protein_coding Interval_174378 chrX 150812533 150814047 + 0 NA promoter-TSS (ENSMUSG00000025268.15) protein_coding-promoter-TSS (ENSMUSG00000025268.15) -212 ENSMUSG00000025268.15 ENSMUSG00000025268 ENSMUST00000131241 Maged2 protein_coding Interval_35370 chr12 21125518 21125842 + 0 NA intron (ENSMUSG00000052632.16, intron 1 of 27) protein_coding-intron (ENSMUSG00000052632.16, intron 1 of 26) 82721 ENSMUSG00000092229.3 ENSMUSG00000092229 ENSMUST00000174304 Gm5977 transcribed_unprocessed_pseudogene Interval_72949 chr17 33747927 33748116 + 0 NA TTS (ENSMUSG00000077450.13) protein_coding-TTS (ENSMUSG00000077450.13) -11971 ENSMUSG00000090952.2 ENSMUSG00000090952 ENSMUST00000170103 Gm17251 bidirectional_promoter_lncRNA Interval_71602 chr17 24794268 24795158 + 0 NA Intergenic Intergenic -9646 ENSMUSG00000024155.8 ENSMUSG00000024155 ENSMUST00000234455 Meiob protein_coding Interval_113362 chr4 53839331 53840727 + 0 NA promoter-TSS (ENSMUSG00000028420.13) protein_coding-promoter-TSS (ENSMUSG00000028420.13) 13972 ENSMUSG00000028420.13 ENSMUSG00000028420 ENSMUST00000144167 Tmem38b protein_coding Interval_91716 chr2 48657621 48659223 + 0 NA Intergenic Intergenic 152133 ENSMUSG00000082114.2 ENSMUSG00000082114 ENSMUST00000121234 Gm13489 processed_pseudogene Interval_70158 chr17 5862900 5863126 + 0 NA intron (ENSMUSG00000002365.10, intron 1 of 17) protein_coding-intron (ENSMUSG00000002365.10, intron 1 of 17) 21661 ENSMUSG00000002365.10 ENSMUSG00000002365 ENSMUST00000231803 Snx9 protein_coding Interval_45346 chr13 54596351 54596837 + 0 NA exon (ENSMUSG00000047547.14, exon 4 of 4) protein_coding-exon (ENSMUSG00000047547.14, exon 4 of 4) 6387 ENSMUSG00000025868.6 ENSMUSG00000025868 ENSMUST00000026986 Higd2a protein_coding Interval_68716 chr16 84942252 84944657 + 0 NA Intergenic Intergenic -28760 ENSMUSG00000115518.1 ENSMUSG00000115518 ENSMUST00000227835 Gm10791 antisense Interval_138351 chr6 87519417 87519783 + 0 NA intron (ENSMUSG00000030047.14, intron 1 of 10) protein_coding-intron (ENSMUSG00000030047.14, intron 1 of 9) -13807 ENSMUSG00000108184.1 ENSMUSG00000108184 ENSMUST00000203063 Gm44198 TEC Interval_163232 chr9 18784679 18786066 + 0 NA Intergenic Intergenic -21376 ENSMUSG00000054141.5 ENSMUSG00000054141 ENSMUST00000066997 Olfr24 protein_coding Interval_160341 chr8 108592179 108592531 + 0 NA intron (ENSMUSG00000038872.10, intron 4 of 15) protein_coding-intron (ENSMUSG00000038872.10, intron 4 of 15) -7760 ENSMUSG00000110613.1 ENSMUSG00000110613 ENSMUST00000211953 Lncbate1 lincRNA Interval_113397 chr4 54446942 54448113 + 0 NA Intergenic Intergenic -20825 ENSMUSG00000093183.2 ENSMUSG00000093183 ENSMUST00000175442 Gm25687 misc_RNA Interval_77650 chr17 93562631 93562895 + 0 NA Intergenic Intergenic 117902 ENSMUSG00000117514.1 ENSMUSG00000117514 ENSMUST00000234106 Gm50002 processed_pseudogene Interval_165331 chr9 46352248 46352900 + 0 NA intron (ENSMUSG00000110864.1, intron 4 of 4) lincRNA-intron (ENSMUSG00000110864.1, intron 4 of 4) 9799 ENSMUSG00000110864.1 ENSMUSG00000110864 ENSMUST00000214913 Gm31374 lincRNA Interval_166795 chr9 62763272 62764486 + 0 NA intron (ENSMUSG00000032243.8, intron 18 of 27) protein_coding-intron (ENSMUSG00000032243.8, intron 18 of 29) -26025 ENSMUSG00000111537.1 ENSMUSG00000111537 ENSMUST00000214567 Gm7653 processed_pseudogene Interval_28647 chr11 77525950 77526826 + 0 NA intron (ENSMUSG00000000686.11, intron 1 of 1) protein_coding-intron (ENSMUSG00000000686.11, intron 1 of 1) -7190 ENSMUSG00000072673.2 ENSMUSG00000072673 ENSMUST00000100807 Gm10392 antisense Interval_101548 chr3 5215348 5215540 + 0 NA TTS (ENSMUSG00000103881.1) TEC-TTS (ENSMUSG00000103881.1) 2606 ENSMUSG00000103881.1 ENSMUSG00000103881 ENSMUST00000194070 Gm10748 TEC Interval_16955 chr10 70111857 70112240 + 0 NA intron (ENSMUSG00000048701.13, intron 1 of 8) protein_coding-intron (ENSMUSG00000048701.13, intron 1 of 8) -62963 ENSMUSG00000048701.13 ENSMUSG00000048701 ENSMUST00000135607 Ccdc6 protein_coding Interval_168956 chr9 89678996 89679241 + 0 NA Intergenic Intergenic -10647 ENSMUSG00000111569.1 ENSMUSG00000111569 ENSMUST00000215251 Gm47410 processed_pseudogene Interval_2986 chr1 51897593 51898001 + 0 NA intron (ENSMUSG00000018417.14, intron 1 of 6) protein_coding-intron (ENSMUSG00000018417.14, intron 1 of 30) 18115 ENSMUSG00000018417.14 ENSMUSG00000018417 ENSMUST00000126657 Myo1b protein_coding Interval_145510 chr7 35298054 35298441 + 0 NA intron (ENSMUSG00000063808.14, intron 9 of 20) protein_coding-intron (ENSMUSG00000063808.14, intron 9 of 19) -12928 ENSMUSG00000063808.14 ENSMUSG00000063808 ENSMUST00000153778 Gpatch1 protein_coding Interval_87433 chr19 50426024 50426451 + 0 NA intron (ENSMUSG00000043531.16, intron 2 of 25) protein_coding-intron (ENSMUSG00000043531.16, intron 3 of 26) -251169 ENSMUSG00000097446.1 ENSMUSG00000097446 ENSMUST00000180848 Gm26629 antisense Interval_54359 chr14 67911716 67912492 + 0 NA intron (ENSMUSG00000044447.5, intron 1 of 17) protein_coding-intron (ENSMUSG00000044447.5, intron 1 of 51) -52359 ENSMUSG00000098866.1 ENSMUSG00000098866 ENSMUST00000183732 Mir6539 miRNA Interval_3748 chr1 62742581 62743881 + 0 NA intron (ENSMUSG00000025969.15, intron 3 of 16) protein_coding-intron (ENSMUSG00000025969.15, intron 3 of 15) -25158 ENSMUSG00000100811.1 ENSMUSG00000100811 ENSMUST00000189205 Gm29083 antisense Interval_76182 chr17 76272340 76272557 + 0 NA Intergenic Intergenic 12413 ENSMUSG00000066958.1 ENSMUSG00000066958 ENSMUST00000086601 Gm16391 processed_pseudogene Interval_125016 chr5 63885984 63887583 + 0 NA intron (ENSMUSG00000060512.7, intron 1 of 2) protein_coding-intron (ENSMUSG00000060512.7, intron 2 of 3) 9307 ENSMUSG00000060512.7 ENSMUSG00000060512 ENSMUST00000199667 0610040J01Rik protein_coding Interval_74977 chr17 58775177 58776268 + 0 NA intron (ENSMUSG00000117100.1, intron 3 of 3) lincRNA-intron (ENSMUSG00000117100.1, intron 3 of 3) 27904 ENSMUSG00000117298.1 ENSMUSG00000117298 ENSMUST00000232925 Gm9284 processed_pseudogene Interval_10609 chr1 172200711 172201150 + 0 NA intron (ENSMUSG00000013698.12, intron 1 of 1) protein_coding-intron (ENSMUSG00000013698.12, intron 1 of 3) 5767 ENSMUSG00000013698.12 ENSMUSG00000013698 ENSMUST00000152432 Pea15a protein_coding Interval_139786 chr6 108700170 108700972 + 0 NA Intergenic Intergenic 37525 ENSMUSG00000030103.11 ENSMUSG00000030103 ENSMUST00000204550 Bhlhe40 protein_coding Interval_52197 chr14 40182028 40182252 + 0 NA Intergenic Intergenic 33101 ENSMUSG00000077019.1 ENSMUSG00000077019 ENSMUST00000103831 Gm22191 miRNA Interval_153575 chr8 3485161 3485772 + 0 NA intron (ENSMUSG00000040340.13, intron 6 of 7) protein_coding-intron (ENSMUSG00000040340.13, intron 7 of 8) -9543 ENSMUSG00000047264.8 ENSMUSG00000047264 ENSMUST00000208423 Zfp358 protein_coding Interval_116371 chr4 110414146 110415024 + 0 NA intron (ENSMUSG00000061298.14, intron 1 of 2) protein_coding-intron (ENSMUSG00000061298.14, intron 1 of 12) -95450 ENSMUSG00000081813.1 ENSMUSG00000081813 ENSMUST00000119384 Gm12806 processed_pseudogene Interval_90612 chr2 31469677 31471072 + 0 NA intron (ENSMUSG00000076441.9, intron 1 of 15) protein_coding-intron (ENSMUSG00000076441.9, intron 1 of 15) -30352 ENSMUSG00000076441.9 ENSMUSG00000076441 ENSMUST00000130195 Ass1 protein_coding Interval_143358 chr7 6105344 6105543 + 0 NA TTS (ENSMUSG00000034690.13) protein_coding-TTS (ENSMUSG00000034690.13) -30987 ENSMUSG00000108923.1 ENSMUSG00000108923 ENSMUST00000208973 4933431C10Rik TEC Interval_88530 chr2 5858560 5858755 + 0 NA intron (ENSMUSG00000025817.12, intron 4 of 5) protein_coding-intron (ENSMUSG00000025817.12, intron 3 of 9) 4277 ENSMUSG00000056718.2 ENSMUSG00000056718 ENSMUST00000071016 Gm13199 protein_coding Interval_149673 chr7 100550531 100550787 + 0 NA TTS (ENSMUSG00000030706.17) protein_coding-TTS (ENSMUSG00000030706.17) -7479 ENSMUSG00000109123.1 ENSMUSG00000109123 ENSMUST00000209160 Gm39059 lincRNA Interval_143054 chr6 148934953 148935651 + 0 NA intron (ENSMUSG00000039985.14, intron 1 of 4) protein_coding-intron (ENSMUSG00000039985.14, intron 1 of 5) 9421 ENSMUSG00000039985.14 ENSMUSG00000039985 ENSMUST00000127063 Sinhcaf protein_coding Interval_196 JH792830.1 111848 112459 + 0 NA NA NA NA NA Interval_141239 chr6 126310537 126311666 + 0 NA intron (ENSMUSG00000107623.1, intron 3 of 3) lincRNA-intron (ENSMUSG00000107623.1, intron 3 of 3) 17585 ENSMUSG00000107623.1 ENSMUSG00000107623 ENSMUST00000204181 Gm10415 lincRNA Interval_136019 chr6 49809654 49809944 + 0 NA Intergenic Intergenic -12911 ENSMUSG00000029819.6 ENSMUSG00000029819 ENSMUST00000031843 Npy protein_coding Interval_71509 chr17 24220317 24221469 + 0 NA promoter-TSS (ENSMUSG00000024118.14) protein_coding-promoter-TSS (ENSMUSG00000024118.14) -140 ENSMUSG00000024118.14 ENSMUSG00000024118 ENSMUST00000149916 Tedc2 protein_coding Interval_64520 chr16 13029472 13029750 + 0 NA Intergenic Intergenic -78148 ENSMUSG00000116170.1 ENSMUSG00000116170 ENSMUST00000230534 Gm6332 processed_pseudogene Interval_169157 chr9 94680315 94681410 + 0 NA intron (ENSMUSG00000031129.9, intron 1 of 4) protein_coding-intron (ENSMUSG00000031129.9, intron 1 of 15) 10930 ENSMUSG00000031129.9 ENSMUSG00000031129 ENSMUST00000162329 Slc9a9 protein_coding Interval_80449 chr18 42307906 42309074 + 0 NA intron (ENSMUSG00000024491.16, intron 8 of 19) protein_coding-intron (ENSMUSG00000024491.16, intron 8 of 19) 6600 ENSMUSG00000092935.1 ENSMUSG00000092935 ENSMUST00000175194 Gm22697 miRNA Interval_48667 chr13 100997118 100997316 + 0 NA Intergenic Intergenic 16769 ENSMUSG00000098005.1 ENSMUSG00000098005 ENSMUST00000182472 Gm6114 processed_pseudogene Interval_86345 chr19 38908209 38909513 + 0 NA intron (ENSMUSG00000048720.8, intron 5 of 10) protein_coding-intron (ENSMUSG00000048720.8, intron 7 of 12) -22529 ENSMUSG00000025001.11 ENSMUSG00000025001 ENSMUST00000127968 Hells protein_coding Interval_163716 chr9 24821461 24822767 + 0 NA Intergenic Intergenic 5231 ENSMUSG00000111507.1 ENSMUSG00000111507 ENSMUST00000214455 Amd-ps6 processed_pseudogene Interval_105450 chr3 86692125 86693376 + 0 NA intron (ENSMUSG00000028080.16, intron 8 of 17) protein_coding-intron (ENSMUSG00000028080.16, intron 47 of 56) -20582 ENSMUSG00000094392.1 ENSMUSG00000094392 ENSMUST00000119949 Gm3788 processed_pseudogene Interval_11629 chr1 183442242 183442573 + 0 NA Intergenic Intergenic 21752 ENSMUSG00000104022.1 ENSMUSG00000104022 ENSMUST00000192860 Gm37214 sense_intronic Interval_31966 chr11 104216324 104216727 + 0 NA Intergenic Intergenic -15054 ENSMUSG00000018411.17 ENSMUSG00000018411 ENSMUST00000126820 Mapt protein_coding Interval_145504 chr7 35259323 35259828 + 0 NA intron (ENSMUSG00000118454.1, intron 4 of 9) protein_coding-intron (ENSMUSG00000118454.1, intron 4 of 9) 15958 ENSMUSG00000118454.1 ENSMUSG00000118454 ENSMUST00000238407 Wdr88 protein_coding Interval_1117 chr1 15828991 15829180 + 0 NA intron (ENSMUSG00000025925.14, intron 6 of 9) protein_coding-intron (ENSMUSG00000025925.14, intron 5 of 8) 21444 ENSMUSG00000025925.14 ENSMUSG00000025925 ENSMUST00000188684 Terf1 protein_coding Interval_79784 chr18 35098576 35099225 + 0 NA intron (ENSMUSG00000118380.1, intron 5 of 5) processed_transcript-intron (ENSMUSG00000118380.1, intron 5 of 5) -11277 ENSMUSG00000117727.1 ENSMUSG00000117727 ENSMUST00000238134 Gm3587 lincRNA Interval_168393 chr9 80004310 80004960 + 0 NA exon (ENSMUSG00000111827.1, exon 1 of 1) processed_pseudogene-exon (ENSMUSG00000111827.1, exon 1 of 1) 797 ENSMUSG00000111827.1 ENSMUSG00000111827 ENSMUST00000213783 Gm8131 processed_pseudogene Interval_123670 chr5 34426397 34426603 + 0 NA exon (ENSMUSG00000037210.16, exon 1 of 17) protein_coding-exon (ENSMUSG00000037210.16, exon 1 of 17) -4719 ENSMUSG00000037210.16 ENSMUSG00000037210 ENSMUST00000181379 Fam193a protein_coding Interval_21302 chr10 127738182 127740141 + 0 NA promoter-TSS (ENSMUSG00000044617.8) protein_coding-promoter-TSS (ENSMUSG00000044617.8) -377 ENSMUSG00000044617.8 ENSMUSG00000044617 ENSMUST00000054287 Zbtb39 protein_coding Interval_95633 chr2 113199388 113199972 + 0 NA intron (ENSMUSG00000057378.15, intron 1 of 103) protein_coding-intron (ENSMUSG00000057378.15, intron 1 of 102) -86052 ENSMUSG00000041255.2 ENSMUSG00000041255 ENSMUST00000040856 Tmco5b protein_coding Interval_145809 chr7 39486418 39487877 + 0 NA Intergenic Intergenic -2291 ENSMUSG00000100490.1 ENSMUSG00000100490 ENSMUST00000189105 Gm28455 unprocessed_pseudogene Interval_143651 chr7 13896672 13897622 + 0 NA Intergenic Intergenic 48418 ENSMUSG00000100566.1 ENSMUSG00000100566 ENSMUST00000190251 Tmem167-ps2 processed_pseudogene Interval_76880 chr17 84706080 84706830 + 0 NA intron (ENSMUSG00000024120.12, intron 36 of 37) protein_coding-intron (ENSMUSG00000024120.12, intron 36 of 37) 23324 ENSMUSG00000024254.15 ENSMUSG00000024254 ENSMUST00000171915 Abcg8 protein_coding Interval_17381 chr10 76224094 76224409 + 0 NA intron (ENSMUSG00000020230.15, intron 4 of 5) protein_coding-intron (ENSMUSG00000020230.15, intron 4 of 10) -6496 ENSMUSG00000020230.15 ENSMUSG00000020230 ENSMUST00000217726 Prmt2 protein_coding Interval_127419 chr5 103812805 103813982 + 0 NA intron (ENSMUSG00000029313.18, intron 4 of 12) protein_coding-intron (ENSMUSG00000029313.18, intron 4 of 19) 58829 ENSMUSG00000029313.18 ENSMUSG00000029313 ENSMUST00000152145 Aff1 protein_coding Interval_71503 chr17 24199511 24200189 + 0 NA intron (ENSMUSG00000036473.16, intron 1 of 8) protein_coding-intron (ENSMUSG00000036473.16, intron 1 of 7) 5646 ENSMUSG00000036473.16 ENSMUSG00000036473 ENSMUST00000201716 Tbc1d24 protein_coding Interval_24429 chr11 33193206 33194271 + 0 NA Intergenic Intergenic 9851 ENSMUSG00000040610.7 ENSMUSG00000040610 ENSMUST00000037746 Tlx3 protein_coding Interval_157321 chr8 69270584 69272209 + 0 NA intron (ENSMUSG00000079038.3, intron 1 of 5) protein_coding-intron (ENSMUSG00000079038.3, intron 1 of 1) 316 ENSMUSG00000079038.3 ENSMUSG00000079038 ENSMUST00000078257 D130040H23Rik protein_coding Interval_95863 chr2 117348030 117348509 + 0 NA Intergenic Intergenic -5392 ENSMUSG00000027347.18 ENSMUSG00000027347 ENSMUST00000110898 Rasgrp1 protein_coding Interval_29008 chr11 79880315 79881771 + 0 NA Intergenic Intergenic 12672 ENSMUSG00000065283.1 ENSMUSG00000065283 ENSMUST00000083349 Gm24454 snoRNA Interval_41898 chr13 4029366 4030199 + 0 NA Intergenic Intergenic -5463 ENSMUSG00000110055.1 ENSMUSG00000110055 ENSMUST00000210421 Gm18857 unprocessed_pseudogene Interval_136117 chr6 51183696 51184267 + 0 NA Intergenic Intergenic 85929 ENSMUSG00000065505.1 ENSMUSG00000065505 ENSMUST00000083571 Mir148a miRNA Interval_165933 chr9 54772332 54772666 + 0 NA intron (ENSMUSG00000032291.8, intron 3 of 3) protein_coding-intron (ENSMUSG00000032291.8, intron 3 of 3) 7751 ENSMUSG00000032291.8 ENSMUSG00000032291 ENSMUST00000034830 Crabp1 protein_coding Interval_112964 chr4 46497327 46497976 + 0 NA intron (ENSMUSG00000039853.18, intron 4 of 5) protein_coding-intron (ENSMUSG00000028334.10, intron 2 of 5) 2496 ENSMUSG00000064410.1 ENSMUSG00000064410 ENSMUST00000082476 Gm22247 snoRNA Interval_74880 chr17 57040902 57041586 + 0 NA promoter-TSS (ENSMUSG00000091390.1) antisense-promoter-TSS (ENSMUSG00000091390.1) 403 ENSMUSG00000011486.14 ENSMUSG00000011486 ENSMUST00000169012 Slc25a41 protein_coding Interval_32876 chr11 112694609 112695844 + 0 NA intron (ENSMUSG00000041674.16, intron 1 of 3) processed_transcript-intron (ENSMUSG00000041674.16, intron 1 of 5) 16114 ENSMUSG00000041674.16 ENSMUSG00000041674 ENSMUST00000148724 BC006965 processed_transcript Interval_18086 chr10 82240586 82241846 + 0 NA promoter-TSS (ENSMUSG00000062931.15) protein_coding-promoter-TSS (ENSMUSG00000062931.15) 64 ENSMUSG00000062931.15 ENSMUSG00000062931 ENSMUST00000156218 Zfp938 protein_coding Interval_166642 chr9 61509536 61510094 + 0 NA promoter-TSS (ENSMUSG00000111381.1) transcribed_processed_pseudogene-promoter-TSS (ENSMUSG00000111381.1) 92 ENSMUSG00000111381.1 ENSMUSG00000111381 ENSMUST00000213400 Gm34424 transcribed_processed_pseudogene Interval_2146 chr1 36717744 36717991 + 0 NA intron (ENSMUSG00000102416.4, intron 1 of 8) protein_coding-intron (ENSMUSG00000102416.4, intron 1 of 4) 3329 ENSMUSG00000102416.4 ENSMUSG00000102416 ENSMUST00000193459 4933424G06Rik protein_coding Interval_3849 chr1 63657553 63658455 + 0 NA intron (ENSMUSG00000069085.5, intron 10 of 14) protein_coding-intron (ENSMUSG00000069085.5, intron 10 of 14) -13464 ENSMUSG00000083066.1 ENSMUSG00000083066 ENSMUST00000120763 Gm12748 processed_pseudogene Interval_61958 chr15 85493915 85495145 + 0 NA intron (ENSMUSG00000096607.1, intron 3 of 4) protein_coding-intron (ENSMUSG00000096607.1, intron 3 of 4) 8697 ENSMUSG00000096607.1 ENSMUSG00000096607 ENSMUST00000178942 7530416G11Rik protein_coding Interval_89202 chr2 18018015 18018940 + 0 NA Intergenic Intergenic 10394 ENSMUSG00000054057.2 ENSMUSG00000054057 ENSMUST00000151857 A930004D18Rik protein_coding Interval_45179 chr13 52978497 52978732 + 0 NA intron (ENSMUSG00000056749.7, intron 1 of 1) protein_coding-intron (ENSMUSG00000056749.7, intron 1 of 1) 2459 ENSMUSG00000056749.7 ENSMUSG00000056749 ENSMUST00000071065 Nfil3 protein_coding Interval_5563 chr1 89833357 89834218 + 0 NA intron (ENSMUSG00000055013.16, intron 2 of 2) protein_coding-intron (ENSMUSG00000055013.16, intron 13 of 17) 8306 ENSMUSG00000103252.1 ENSMUSG00000103252 ENSMUST00000193177 Gm37521 TEC Interval_151175 chr7 118992284 118993035 + 0 NA intron (ENSMUSG00000008734.9, intron 1 of 3) protein_coding-intron (ENSMUSG00000008734.9, intron 1 of 3) -8015 ENSMUSG00000008734.9 ENSMUSG00000008734 ENSMUST00000207614 Gprc5b protein_coding Interval_3706 chr1 61378187 61378843 + 0 NA promoter-TSS (ENSMUSG00000085447.1) lincRNA-promoter-TSS (ENSMUSG00000085447.1) 83 ENSMUSG00000085447.1 ENSMUSG00000085447 ENSMUST00000141000 9530026F06Rik lincRNA Interval_42959 chr13 21918823 21920942 + 0 NA Intergenic Intergenic 5134 ENSMUSG00000105839.1 ENSMUSG00000105839 ENSMUST00000196554 Gm44456 miRNA Interval_22001 chr11 5701763 5703480 + 0 NA Intergenic Intergenic 5066 ENSMUSG00000020477.10 ENSMUSG00000020477 ENSMUST00000123697 Mrps24 protein_coding Interval_162071 chr8 124871613 124873592 + 0 NA intron (ENSMUSG00000031985.9, intron 2 of 12) protein_coding-intron (ENSMUSG00000031985.9, intron 2 of 15) -9637 ENSMUSG00000031984.8 ENSMUSG00000031984 ENSMUST00000212808 2810004N23Rik protein_coding Interval_57682 chr15 15179601 15179869 + 0 NA Intergenic Intergenic 41548 ENSMUSG00000115208.1 ENSMUSG00000115208 ENSMUST00000226940 Gm49118 processed_pseudogene Interval_108983 chr3 133907041 133907209 + 0 NA intron (ENSMUSG00000097911.2, intron 1 of 2) antisense-intron (ENSMUSG00000097911.2, intron 1 of 2) -88607 ENSMUSG00000104645.1 ENSMUSG00000104645 ENSMUST00000200327 Gm30484 lincRNA Interval_37333 chr12 65172047 65173312 + 0 NA promoter-TSS (ENSMUSG00000047534.17) protein_coding-promoter-TSS (ENSMUSG00000047534.17) -81 ENSMUSG00000047534.17 ENSMUSG00000047534 ENSMUST00000131753 Mis18bp1 protein_coding Interval_46772 chr13 70155697 70156129 + 0 NA intron (ENSMUSG00000113573.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000113573.1, intron 1 of 2) 6113 ENSMUSG00000113573.1 ENSMUSG00000113573 ENSMUST00000222864 AU017674 lincRNA Interval_16537 chr10 63439021 63440486 + 0 NA intron (ENSMUSG00000060843.11, intron 1 of 17) protein_coding-intron (ENSMUSG00000060843.11, intron 1 of 17) -17964 ENSMUSG00000048185.5 ENSMUSG00000048185 ENSMUST00000054760 Gm7075 protein_coding Interval_52668 chr14 48445997 48446828 + 0 NA promoter-TSS (ENSMUSG00000036339.18) protein_coding-promoter-TSS (ENSMUSG00000036339.18) -25910 ENSMUSG00000036339.18 ENSMUSG00000036339 ENSMUST00000226344 Tmem260 protein_coding Interval_174371 chrX 150521380 150522163 + 0 NA exon (ENSMUSG00000025269.16, exon 7 of 7) protein_coding-exon (ENSMUSG00000025269.16, exon 7 of 7) 25674 ENSMUSG00000099172.1 ENSMUSG00000099172 ENSMUST00000184710 Mir3620 miRNA Interval_96261 chr2 121030121 121030729 + 0 NA intron (ENSMUSG00000023216.13, intron 3 of 12) protein_coding-intron (ENSMUSG00000023216.13, intron 3 of 9) 6320 ENSMUSG00000023216.13 ENSMUSG00000023216 ENSMUST00000152217 Epb42 protein_coding Interval_34873 chr12 12878986 12880020 + 0 NA Intergenic Intergenic 13933 ENSMUSG00000113363.1 ENSMUSG00000113363 ENSMUST00000221441 Gm48187 lincRNA Interval_64311 chr16 10398881 10400639 + 0 NA Intergenic Intergenic -4312 ENSMUSG00000039179.13 ENSMUSG00000039179 ENSMUST00000115831 Tekt5 protein_coding Interval_73321 chr17 36192005 36194029 + 0 NA Intergenic Intergenic 1794 ENSMUSG00000092240.1 ENSMUSG00000092240 ENSMUST00000172822 Gm4246 processed_pseudogene Interval_6432 chr1 108523967 108524187 + 0 NA Intergenic Intergenic 88437 ENSMUSG00000101231.1 ENSMUSG00000101231 ENSMUST00000185509 Gm28283 processed_pseudogene Interval_168673 chr9 85712751 85713108 + 0 NA intron (ENSMUSG00000035941.15, intron 5 of 6) protein_coding-intron (ENSMUSG00000035941.15, intron 20 of 28) 5609 ENSMUSG00000035941.15 ENSMUSG00000035941 ENSMUST00000186447 Ibtk protein_coding Interval_40670 chr12 106808132 106808782 + 0 NA Intergenic Intergenic -29525 ENSMUSG00000085801.1 ENSMUSG00000085801 ENSMUST00000156376 1700013N06Rik lincRNA Interval_93957 chr2 80086401 80086978 + 0 NA intron (ENSMUSG00000059173.19, intron 1 of 15) protein_coding-intron (ENSMUSG00000059173.19, intron 2 of 15) 42250 ENSMUSG00000059173.19 ENSMUSG00000059173 ENSMUST00000125887 Pde1a protein_coding Interval_136619 chr6 56733139 56733387 + 0 NA intron (ENSMUSG00000029787.10, intron 8 of 9) protein_coding-intron (ENSMUSG00000029787.10, intron 8 of 15) 18364 ENSMUSG00000029787.10 ENSMUSG00000029787 ENSMUST00000176560 Avl9 protein_coding Interval_24081 chr11 30071495 30071836 + 0 NA Intergenic Intergenic -34729 ENSMUSG00000101872.1 ENSMUSG00000101872 ENSMUST00000186216 Gm29237 antisense Interval_73067 chr17 34586744 34588090 + 0 NA TTS (ENSMUSG00000015468.14) protein_coding-TTS (ENSMUSG00000015468.14) -2814 ENSMUSG00000034786.17 ENSMUSG00000034786 ENSMUST00000173772 Gpsm3 protein_coding Interval_50853 chr14 20215470 20215951 + 0 NA intron (ENSMUSG00000114439.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000114439.1, intron 1 of 1) 208 ENSMUSG00000114439.1 ENSMUSG00000114439 ENSMUST00000223732 Gm48395 lincRNA Interval_99873 chr2 165424468 165425531 + 0 NA intron (ENSMUSG00000018459.15, intron 7 of 11) protein_coding-intron (ENSMUSG00000018459.15, intron 8 of 12) -17265 ENSMUSG00000085358.1 ENSMUSG00000085358 ENSMUST00000152284 Gm14437 antisense Interval_13690 chr10 21065631 21065849 + 0 NA intron (ENSMUSG00000019986.17, intron 4 of 6) protein_coding-intron (ENSMUSG00000019986.17, intron 21 of 23) -4105 ENSMUSG00000019986.17 ENSMUSG00000019986 ENSMUST00000215543 Ahi1 protein_coding Interval_171691 chr9 120181230 120181437 + 0 NA exon (ENSMUSG00000032517.16, exon 6 of 6) protein_coding-exon (ENSMUSG00000032517.16, exon 6 of 6) -1231 ENSMUSG00000104494.1 ENSMUSG00000104494 ENSMUST00000193250 Gm37111 TEC Interval_137152 chr6 68411953 68412174 + 0 NA Intergenic Intergenic -13512 ENSMUSG00000076522.2 ENSMUSG00000076522 ENSMUST00000103323 Igkv16-104 IG_V_gene Interval_101491 chr2 181876663 181877251 + 0 NA Intergenic Intergenic 12597 ENSMUSG00000038628.8 ENSMUSG00000038628 ENSMUST00000153214 Polr3k protein_coding Interval_74788 chr17 56547251 56548195 + 0 NA Intergenic Intergenic 6664 ENSMUSG00000110218.1 ENSMUSG00000110218 ENSMUST00000209718 Gm20219 protein_coding Interval_142158 chr6 137703638 137703857 + 0 NA Intergenic Intergenic -41293 ENSMUSG00000030224.10 ENSMUSG00000030224 ENSMUST00000137235 Strap protein_coding Interval_79031 chr18 24063163 24063420 + 0 NA Intergenic Intergenic 18633 ENSMUSG00000117500.1 ENSMUSG00000117500 ENSMUST00000234749 Gm18085 processed_pseudogene Interval_164344 chr9 35534947 35535490 + 0 NA Intergenic Intergenic -16949 ENSMUSG00000098590.4 ENSMUSG00000098590 ENSMUST00000183573 Gm1113 protein_coding Interval_79257 chr18 28016666 28016856 + 0 NA Intergenic Intergenic 172056 ENSMUSG00000117416.1 ENSMUSG00000117416 ENSMUST00000234906 Gm5064 processed_pseudogene Interval_170383 chr9 107587154 107588135 + 0 NA promoter-TSS (ENSMUSG00000010048.10) protein_coding-promoter-TSS (ENSMUSG00000010048.10) -219 ENSMUSG00000089935.1 ENSMUSG00000089935 ENSMUST00000162027 Gm16343 antisense Interval_469 chr1 6009312 6010260 + 0 NA Intergenic Intergenic 40259 ENSMUSG00000103090.1 ENSMUSG00000103090 ENSMUST00000191956 Gm19214 processed_pseudogene Interval_25547 chr11 49701703 49701920 + 0 NA intron (ENSMUSG00000020362.13, intron 2 of 11) protein_coding-intron (ENSMUSG00000020362.13, intron 2 of 11) 3931 ENSMUSG00000081570.1 ENSMUSG00000081570 ENSMUST00000120146 Gm12192 processed_pseudogene Interval_143037 chr6 148798107 148798304 + 0 NA intron (ENSMUSG00000040029.15, intron 2 of 11) protein_coding-intron (ENSMUSG00000040029.15, intron 15 of 24) 1627 ENSMUSG00000040029.15 ENSMUSG00000040029 ENSMUST00000205196 Ipo8 protein_coding Interval_82462 chr18 74224587 74224864 + 0 NA Intergenic Intergenic 6854 ENSMUSG00000024560.7 ENSMUSG00000024560 ENSMUST00000236679 Cxxc1 protein_coding Interval_10753 chr1 174253447 174254743 + 0 NA Intergenic Intergenic -2034 ENSMUSG00000050788.5 ENSMUSG00000050788 ENSMUST00000061990 Olfr419 protein_coding Interval_156865 chr8 61299882 61300189 + 0 NA intron (ENSMUSG00000031642.9, intron 2 of 10) protein_coding-intron (ENSMUSG00000031642.9, intron 2 of 11) -11163 ENSMUSG00000099419.1 ENSMUSG00000099419 ENSMUST00000188654 1700001D01Rik antisense Interval_104904 chr3 78901562 78901790 + 0 NA Intergenic Intergenic -9254 ENSMUSG00000091361.2 ENSMUSG00000091361 ENSMUST00000164923 Gm5277 processed_pseudogene Interval_140244 chr6 115761952 115762819 + 0 NA promoter-TSS (ENSMUSG00000059900.14) protein_coding-promoter-TSS (ENSMUSG00000059900.14) 25 ENSMUSG00000059900.14 ENSMUSG00000059900 ENSMUST00000166254 Tmem40 protein_coding Interval_112757 chr4 44643663 44643992 + 0 NA intron (ENSMUSG00000014030.15, intron 1 of 5) protein_coding-intron (ENSMUSG00000014030.15, intron 6 of 9) 1896 ENSMUSG00000014030.15 ENSMUSG00000014030 ENSMUST00000191036 Pax5 protein_coding Interval_28832 chr11 78615722 78616528 + 0 NA intron (ENSMUSG00000017376.15, intron 3 of 10) protein_coding-intron (ENSMUSG00000017376.15, intron 3 of 10) -30570 ENSMUSG00000082110.1 ENSMUSG00000082110 ENSMUST00000119052 Gm11196 processed_pseudogene Interval_51972 chr14 34358117 34358721 + 0 NA Intergenic Intergenic -2986 ENSMUSG00000043681.5 ENSMUSG00000043681 ENSMUST00000052126 Fam25c protein_coding Interval_164831 chr9 42324560 42325341 + 0 NA Intergenic Intergenic -7269 ENSMUSG00000096114.1 ENSMUSG00000096114 ENSMUST00000179241 Gm26272 snoRNA Interval_139599 chr6 102187103 102187403 + 0 NA intron (ENSMUSG00000030075.10, intron 19 of 22) protein_coding-intron (ENSMUSG00000030075.10, intron 18 of 21) -10141 ENSMUSG00000108092.1 ENSMUSG00000108092 ENSMUST00000204387 Gm44189 TEC Interval_11970 chr1 187907705 187908364 + 0 NA intron (ENSMUSG00000026610.13, intron 3 of 3) protein_coding-intron (ENSMUSG00000026610.13, intron 2 of 7) 100956 ENSMUSG00000103577.1 ENSMUSG00000103577 ENSMUST00000195397 9330162B11Rik antisense Interval_37361 chr12 65478431 65479445 + 0 NA Intergenic Intergenic -51314 ENSMUSG00000088441.1 ENSMUSG00000088441 ENSMUST00000157816 Gm25599 snRNA Interval_173172 chrX 73794793 73795144 + 0 NA promoter-TSS (ENSMUSG00000085669.1) processed_transcript-promoter-TSS (ENSMUSG00000085669.1) -247 ENSMUSG00000085669.1 ENSMUSG00000085669 ENSMUST00000148522 Gm14817 processed_transcript Interval_57636 chr15 13005314 13006788 + 0 NA Intergenic Intergenic 25222 ENSMUSG00000089564.1 ENSMUSG00000089564 ENSMUST00000158939 Gm24664 rRNA Interval_3645 chr1 60349757 60350668 + 0 NA intron (ENSMUSG00000049439.13, intron 1 of 11) protein_coding-intron (ENSMUSG00000049439.13, intron 1 of 12) -2907 ENSMUSG00000103822.1 ENSMUSG00000103822 ENSMUST00000191764 6030460B20Rik TEC Interval_156612 chr8 54600672 54601299 + 0 NA promoter-TSS (ENSMUSG00000089708.1) antisense-promoter-TSS (ENSMUSG00000089708.1) 2 ENSMUSG00000089708.1 ENSMUSG00000089708 ENSMUST00000162770 5330439A09Rik antisense Interval_62916 chr15 97871175 97871845 + 0 NA intron (ENSMUSG00000022479.15, intron 4 of 9) protein_coding-intron (ENSMUSG00000022479.15, intron 4 of 9) 39120 ENSMUSG00000022479.15 ENSMUSG00000022479 ENSMUST00000173611 Vdr protein_coding Interval_43559 chr13 33205501 33206112 + 0 NA Intergenic Intergenic 12345 ENSMUSG00000081237.3 ENSMUSG00000081237 ENSMUST00000121513 Gm11385 unprocessed_pseudogene Interval_145129 chr7 30197707 30200541 + 0 NA promoter-TSS (ENSMUSG00000001794.13) protein_coding-promoter-TSS (ENSMUSG00000001794.13) 5170 ENSMUSG00000097817.2 ENSMUSG00000097817 ENSMUST00000181153 Gm26810 antisense Interval_123496 chr5 32922164 32923140 + 0 NA intron (ENSMUSG00000037426.18, intron 21 of 32) protein_coding-intron (ENSMUSG00000037426.18, intron 21 of 32) 9021 ENSMUSG00000089080.1 ENSMUSG00000089080 ENSMUST00000158455 Gm24003 snRNA Interval_69171 chr16 91107367 91108347 + 0 NA Intergenic Intergenic 6742 ENSMUSG00000081176.1 ENSMUSG00000081176 ENSMUST00000119544 H3f3a-ps2 processed_pseudogene Interval_9848 chr1 163091570 163093200 + 0 NA Intergenic Intergenic -6715 ENSMUSG00000071890.4 ENSMUSG00000071890 ENSMUST00000096608 Mroh9 protein_coding Interval_136658 chr6 57239260 57239600 + 0 NA exon (ENSMUSG00000114982.1, exon 3 of 3) protein_coding-exon (ENSMUSG00000114982.1, exon 3 of 3) 7744 ENSMUSG00000114982.1 ENSMUSG00000114982 ENSMUST00000177435 Vmn1r14 protein_coding Interval_141806 chr6 134621106 134621860 + 0 NA intron (ENSMUSG00000032718.4, intron 2 of 3) protein_coding-intron (ENSMUSG00000032718.4, intron 2 of 3) -3499 ENSMUSG00000108121.1 ENSMUSG00000108121 ENSMUST00000203765 Gm43952 TEC Interval_4484 chr1 74478063 74478420 + 0 NA intron (ENSMUSG00000033364.13, intron 8 of 19) protein_coding-intron (ENSMUSG00000033364.13, intron 8 of 23) 25060 ENSMUSG00000103227.1 ENSMUSG00000103227 ENSMUST00000195478 Gm37733 TEC Interval_113382 chr4 53987278 53987685 + 0 NA Intergenic Intergenic -16576 ENSMUSG00000089552.1 ENSMUSG00000089552 ENSMUST00000158927 Gm24177 snoRNA Interval_134936 chr6 33929135 33930177 + 0 NA intron (ENSMUSG00000029763.17, intron 17 of 17) protein_coding-intron (ENSMUSG00000029763.17, intron 17 of 17) 62755 ENSMUSG00000087441.1 ENSMUSG00000087441 ENSMUST00000155496 Gm13853 lincRNA Interval_22882 chr11 17082022 17083618 + 0 NA Intergenic Intergenic 12824 ENSMUSG00000082099.1 ENSMUSG00000082099 ENSMUST00000121971 Gm12013 processed_pseudogene Interval_158491 chr8 84025904 84027713 + 0 NA exon (ENSMUSG00000047986.12, exon 4 of 7) protein_coding-exon (ENSMUSG00000047986.12, exon 4 of 7) 733 ENSMUSG00000047986.12 ENSMUSG00000047986 ENSMUST00000154171 Palm3 protein_coding Interval_28165 chr11 73369260 73370095 + 0 NA Intergenic Intergenic -1569 ENSMUSG00000063881.11 ENSMUSG00000063881 ENSMUST00000170592 Olfr376 protein_coding Interval_152360 chr7 132385944 132386266 + 0 NA intron (ENSMUSG00000030849.18, intron 2 of 6) protein_coding-intron (ENSMUSG00000030849.18, intron 2 of 6) -20242 ENSMUSG00000109137.1 ENSMUSG00000109137 ENSMUST00000207222 Gm34908 lincRNA Interval_133546 chr6 6458762 6459455 + 0 NA intron (ENSMUSG00000093658.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000093658.1, intron 2 of 2) -23914 ENSMUSG00000093380.1 ENSMUSG00000093380 ENSMUST00000176654 Gm20685 lincRNA Interval_80043 chr18 36912836 36913170 + 0 NA Intergenic Intergenic -7393 ENSMUSG00000063514.3 ENSMUSG00000063514 ENSMUST00000180647 Gm6756 processed_pseudogene Interval_74846 chr17 56849450 56850313 + 0 NA exon (ENSMUSG00000024207.8, exon 10 of 15) protein_coding-exon (ENSMUSG00000024207.8, exon 10 of 15) -18942 ENSMUSG00000024206.15 ENSMUSG00000024206 ENSMUST00000233643 Rfx2 protein_coding Interval_23415 chr11 22479660 22481058 + 0 NA Intergenic Intergenic -3249 ENSMUSG00000085021.1 ENSMUSG00000085021 ENSMUST00000147771 Gm12051 lincRNA Interval_35944 chr12 32291820 32293077 + 0 NA Intergenic Intergenic 46118 ENSMUSG00000112578.1 ENSMUSG00000112578 ENSMUST00000218566 Gm33308 lincRNA Interval_141386 chr6 127879192 127880220 + 0 NA Intergenic Intergenic -2460 ENSMUSG00000107060.1 ENSMUSG00000107060 ENSMUST00000202448 Gm38901 lincRNA Interval_130936 chr5 134141200 134143579 + 0 NA exon (ENSMUSG00000015944.9, exon 9 of 9) protein_coding-exon (ENSMUSG00000015944.9, exon 9 of 9) 25871 ENSMUSG00000061979.8 ENSMUSG00000061979 ENSMUST00000156574 Rcc1l protein_coding Interval_148192 chr7 79727077 79727330 + 0 NA intron (ENSMUSG00000030546.14, intron 2 of 3) protein_coding-intron (ENSMUSG00000030546.14, intron 4 of 8) 2662 ENSMUSG00000030546.14 ENSMUSG00000030546 ENSMUST00000205413 Plin1 protein_coding Interval_152325 chr7 131791148 131791860 + 0 NA intron (ENSMUSG00000030849.18, intron 2 of 6) protein_coding-intron (ENSMUSG00000030849.18, intron 2 of 6) -4925 ENSMUSG00000108839.1 ENSMUSG00000108839 ENSMUST00000207793 Gm44547 TEC Interval_5512 chr1 89465321 89466725 + 0 NA intron (ENSMUSG00000055013.16, intron 1 of 16) protein_coding-intron (ENSMUSG00000055013.16, intron 1 of 17) -17415 ENSMUSG00000104114.1 ENSMUSG00000104114 ENSMUST00000192974 Gm37297 TEC Interval_123999 chr5 37082190 37082655 + 0 NA intron (ENSMUSG00000063646.18, intron 1 of 1) protein_coding-intron (ENSMUSG00000063646.18, intron 1 of 12) -2948 ENSMUSG00000117286.1 ENSMUSG00000117286 ENSMUST00000094840 Gm1043 protein_coding Interval_43669 chr13 34846651 34846964 + 0 NA Intergenic Intergenic 19770 ENSMUSG00000114127.1 ENSMUSG00000114127 ENSMUST00000221617 Gm8231 processed_pseudogene Interval_14369 chr10 31614982 31615964 + 0 NA Intergenic Intergenic -6289 ENSMUSG00000063760.9 ENSMUSG00000063760 ENSMUST00000081989 Rnf217 protein_coding Interval_60582 chr15 75407561 75408097 + 0 NA Intergenic Intergenic 23895 ENSMUSG00000053168.6 ENSMUSG00000053168 ENSMUST00000190141 9030619P08Rik transcribed_unprocessed_pseudogene Interval_91292 chr2 37481163 37481536 + 0 NA intron (ENSMUSG00000035437.15, intron 5 of 7) protein_coding-intron (ENSMUSG00000035437.15, intron 5 of 25) -7326 ENSMUSG00000107491.1 ENSMUSG00000107491 ENSMUST00000203017 Gm17893 processed_pseudogene Interval_68196 chr16 67652253 67654156 + 0 NA Intergenic Intergenic -59978 ENSMUSG00000082823.3 ENSMUSG00000082823 ENSMUST00000119911 Gm15828 processed_pseudogene Interval_25022 chr11 43263631 43264924 + 0 NA intron (ENSMUSG00000086791.1, intron 1 of 1) antisense-intron (ENSMUSG00000086791.1, intron 1 of 1) -4493 ENSMUSG00000085533.1 ENSMUSG00000085533 ENSMUST00000127604 Gm12146 antisense Interval_167157 chr9 65685980 65686361 + 0 NA intron (ENSMUSG00000040652.16, intron 1 of 5) protein_coding-intron (ENSMUSG00000040652.16, intron 1 of 5) 16458 ENSMUSG00000040652.16 ENSMUSG00000040652 ENSMUST00000128664 Oaz2 protein_coding Interval_77844 chr18 4414577 4415304 + 0 NA Intergenic Intergenic 15612 ENSMUSG00000117579.1 ENSMUSG00000117579 ENSMUST00000234374 Gm50023 lincRNA Interval_114797 chr4 85324681 85325407 + 0 NA intron (ENSMUSG00000028488.15, intron 1 of 7) protein_coding-intron (ENSMUSG00000028488.15, intron 1 of 8) -51297 ENSMUSG00000028488.15 ENSMUSG00000028488 ENSMUST00000133109 Sh3gl2 protein_coding Interval_52520 chr14 47297779 47299499 + 0 NA promoter-TSS (ENSMUSG00000114977.1) TEC-promoter-TSS (ENSMUSG00000114977.1) -97 ENSMUSG00000114977.1 ENSMUSG00000114977 ENSMUST00000227190 Gm9502 TEC Interval_74663 chr17 55762115 55762384 + 0 NA intron (ENSMUSG00000032915.6, intron 2 of 16) protein_coding-intron (ENSMUSG00000032915.6, intron 2 of 16) 6222 ENSMUSG00000117045.1 ENSMUSG00000117045 ENSMUST00000233119 Gm18365 processed_pseudogene Interval_148366 chr7 80786947 80787547 + 0 NA intron (ENSMUSG00000030536.10, intron 2 of 13) protein_coding-intron (ENSMUSG00000030536.10, intron 2 of 37) 16016 ENSMUSG00000030536.10 ENSMUSG00000030536 ENSMUST00000205540 Iqgap1 protein_coding Interval_159946 chr8 105336085 105337455 + 0 NA exon (ENSMUSG00000014778.10, exon 10 of 22) protein_coding-exon (ENSMUSG00000014778.10, exon 10 of 22) 1137 ENSMUSG00000014778.10 ENSMUSG00000014778 ENSMUST00000136439 Fhod1 protein_coding Interval_76475 chr17 80455586 80456818 + 0 NA intron (ENSMUSG00000024241.7, intron 2 of 19) protein_coding-intron (ENSMUSG00000024241.7, intron 2 of 21) 24251 ENSMUSG00000024241.7 ENSMUSG00000024241 ENSMUST00000234841 Sos1 protein_coding Interval_117653 chr4 125300363 125301108 + 0 NA Intergenic Intergenic 72138 ENSMUSG00000087010.1 ENSMUSG00000087010 ENSMUST00000130055 1700041M05Rik lincRNA Interval_127260 chr5 101942312 101942950 + 0 NA intron (ENSMUSG00000043940.15, intron 9 of 64) protein_coding-intron (ENSMUSG00000043940.15, intron 12 of 66) -13976 ENSMUSG00000106451.1 ENSMUSG00000106451 ENSMUST00000196920 Gm42934 TEC Interval_141332 chr6 127335777 127337427 + 0 NA Intergenic Intergenic -10745 ENSMUSG00000106843.1 ENSMUSG00000106843 ENSMUST00000201914 Gm42458 TEC Interval_17825 chr10 80288530 80288918 + 0 NA TTS (ENSMUSG00000069565.12) protein_coding-TTS (ENSMUSG00000069565.12) -3729 ENSMUSG00000063457.14 ENSMUSG00000063457 ENSMUST00000062674 Rps15 protein_coding Interval_102532 chr3 27541207 27542123 + 0 NA intron (ENSMUSG00000039286.12, intron 6 of 26) protein_coding-intron (ENSMUSG00000039286.12, intron 5 of 25) -4976 ENSMUSG00000106625.1 ENSMUSG00000106625 ENSMUST00000198723 Gm43344 TEC Interval_92161 chr2 54925121 54926161 + 0 NA intron (ENSMUSG00000060988.12, intron 7 of 11) protein_coding-intron (ENSMUSG00000060988.12, intron 6 of 10) -78344 ENSMUSG00000089352.1 ENSMUSG00000089352 ENSMUST00000158727 Gm25489 snRNA Interval_120167 chr4 143151241 143151770 + 0 NA intron (ENSMUSG00000057637.13, intron 6 of 9) protein_coding-intron (ENSMUSG00000057637.13, intron 6 of 9) -1067 ENSMUSG00000081838.1 ENSMUSG00000081838 ENSMUST00000119886 Gm13038 processed_pseudogene Interval_100580 chr2 170245513 170246826 + 0 NA Intergenic Intergenic -38866 ENSMUSG00000084013.1 ENSMUSG00000084013 ENSMUST00000118388 Gm14270 processed_pseudogene Interval_47453 chr13 84441496 84441774 + 0 NA Intergenic Intergenic -101522 ENSMUSG00000098245.1 ENSMUSG00000098245 ENSMUST00000182385 Gm26927 processed_pseudogene Interval_71290 chr17 21956636 21956888 + 0 NA intron (ENSMUSG00000071267.11, intron 1 of 2) protein_coding-intron (ENSMUSG00000071267.11, intron 1 of 5) 5702 ENSMUSG00000071267.11 ENSMUSG00000071267 ENSMUST00000126485 Zfp942 protein_coding Interval_75859 chr17 71954349 71954596 + 0 NA intron (ENSMUSG00000055471.7, intron 9 of 28) protein_coding-intron (ENSMUSG00000055471.7, intron 9 of 28) -27442 ENSMUSG00000117126.1 ENSMUSG00000117126 ENSMUST00000233690 Gm49924 TEC Interval_44038 chr13 40277215 40277650 + 0 NA intron (ENSMUSG00000047094.9, intron 3 of 17) protein_coding-intron (ENSMUSG00000047094.9, intron 3 of 18) 10579 ENSMUSG00000047094.9 ENSMUSG00000047094 ENSMUST00000224813 Ofcc1 protein_coding Interval_46857 chr13 72631193 72631954 + 0 NA promoter-TSS (ENSMUSG00000001504.10) protein_coding-promoter-TSS (ENSMUSG00000001504.10) -1024 ENSMUSG00000001504.10 ENSMUSG00000001504 ENSMUST00000172353 Irx2 protein_coding Interval_28511 chr11 76412801 76413590 + 0 NA intron (ENSMUSG00000020843.15, intron 2 of 2) protein_coding-intron (ENSMUSG00000020843.15, intron 3 of 3) 5990 ENSMUSG00000020843.15 ENSMUSG00000020843 ENSMUST00000164102 Timm22 protein_coding Interval_103599 chr3 51081862 51082396 + 0 NA Intergenic Intergenic -7273 ENSMUSG00000102067.1 ENSMUSG00000102067 ENSMUST00000189687 Gm29230 lincRNA Interval_90986 chr2 33943824 33944534 + 0 NA Intergenic Intergenic -2034 ENSMUSG00000085987.2 ENSMUSG00000085987 ENSMUST00000134271 Gm13403 lincRNA Interval_7484 chr1 131765285 131766046 + 0 NA intron (ENSMUSG00000042268.10, intron 18 of 20) protein_coding-intron (ENSMUSG00000042268.10, intron 18 of 20) 21627 ENSMUSG00000042268.10 ENSMUSG00000042268 ENSMUST00000147800 Slc26a9 protein_coding Interval_149328 chr7 97461105 97461401 + 0 NA Intergenic Intergenic 9930 ENSMUSG00000051727.14 ENSMUSG00000051727 ENSMUST00000206279 Kctd14 protein_coding Interval_90264 chr2 29413403 29414244 + 0 NA intron (ENSMUSG00000026799.15, intron 3 of 4) protein_coding-intron (ENSMUSG00000026799.15, intron 3 of 7) -17364 ENSMUSG00000086994.1 ENSMUSG00000086994 ENSMUST00000153600 Gm13402 antisense Interval_173721 chrX 102867637 102867906 + 0 NA intron (ENSMUSG00000032894.13, intron 1 of 7) protein_coding-intron (ENSMUSG00000032894.13, intron 1 of 7) 200 ENSMUSG00000032894.13 ENSMUSG00000032894 ENSMUST00000124592 1700031F05Rik protein_coding Interval_36272 chr12 40515719 40516756 + 0 NA intron (ENSMUSG00000035954.10, intron 1 of 5) protein_coding-intron (ENSMUSG00000035954.10, intron 1 of 52) 70154 ENSMUSG00000035954.10 ENSMUSG00000035954 ENSMUST00000220850 Dock4 protein_coding Interval_34406 chr12 3896954 3897557 + 0 NA promoter-TSS (ENSMUSG00000020661.15) protein_coding-promoter-TSS (ENSMUSG00000020661.15) 34785 ENSMUSG00000112271.1 ENSMUSG00000112271 ENSMUST00000220237 Gm9088 processed_pseudogene Interval_69086 chr16 90531894 90532779 + 0 NA Intergenic Intergenic 18273 ENSMUSG00000116753.1 ENSMUSG00000116753 ENSMUST00000232652 Gm36001 lincRNA Interval_115260 chr4 94956134 94956377 + 0 NA intron (ENSMUSG00000062627.9, intron 12 of 19) protein_coding-intron (ENSMUSG00000062627.9, intron 12 of 19) 14396 ENSMUSG00000062627.9 ENSMUSG00000062627 ENSMUST00000136130 Mysm1 protein_coding Interval_44373 chr13 44399181 44400454 + 0 NA TTS (ENSMUSG00000098107.1) lincRNA-TTS (ENSMUSG00000098107.1) -8700 ENSMUSG00000112936.1 ENSMUSG00000112936 ENSMUST00000222879 Gm33958 lincRNA Interval_101897 chr3 10497545 10498089 + 0 NA Intergenic Intergenic -57717 ENSMUSG00000027534.16 ENSMUSG00000027534 ENSMUST00000195822 Snx16 protein_coding Interval_30854 chr11 96892295 96893611 + 0 NA Intergenic Intergenic -18999 ENSMUSG00000087117.8 ENSMUSG00000087117 ENSMUST00000183967 Gm11523 processed_transcript Interval_168374 chr9 79783964 79784465 + 0 NA intron (ENSMUSG00000032328.12, intron 1 of 5) protein_coding-intron (ENSMUSG00000032328.12, intron 1 of 6) 9216 ENSMUSG00000032328.12 ENSMUSG00000032328 ENSMUST00000130419 Tmem30a protein_coding Interval_166954 chr9 64124930 64125534 + 0 NA intron (ENSMUSG00000032401.15, intron 7 of 12) protein_coding-intron (ENSMUSG00000032401.15, intron 7 of 13) 8060 ENSMUSG00000032401.15 ENSMUSG00000032401 ENSMUST00000132018 Lctl protein_coding Interval_96030 chr2 119293341 119294611 + 0 NA exon (ENSMUSG00000034216.12, exon 4 of 5) protein_coding-exon (ENSMUSG00000034216.12, exon 4 of 5) 5189 ENSMUSG00000034216.12 ENSMUSG00000034216 ENSMUST00000151500 Vps18 protein_coding Interval_112348 chr4 40741782 40742035 + 0 NA intron (ENSMUSG00000028409.11, intron 9 of 11) protein_coding-intron (ENSMUSG00000028409.11, intron 9 of 11) 15923 ENSMUSG00000028409.11 ENSMUSG00000028409 ENSMUST00000137415 Smu1 protein_coding Interval_148151 chr7 79499125 79500266 + 0 NA promoter-TSS (ENSMUSG00000097023.8) lincRNA-promoter-TSS (ENSMUSG00000097023.8) -343 ENSMUSG00000097023.8 ENSMUSG00000097023 ENSMUST00000182125 Mir9-3hg lincRNA Interval_5294 chr1 87297421 87298014 + 0 NA exon (ENSMUSG00000026255.15, exon 3 of 4) protein_coding-exon (ENSMUSG00000026255.15, exon 3 of 4) -11509 ENSMUSG00000026255.15 ENSMUSG00000026255 ENSMUST00000150831 Efhd1 protein_coding Interval_81651 chr18 62855194 62856742 + 0 NA Intergenic Intergenic 66133 ENSMUSG00000117671.1 ENSMUSG00000117671 ENSMUST00000237856 Gm50128 bidirectional_promoter_lncRNA Interval_39519 chr12 89239365 89239605 + 0 NA intron (ENSMUSG00000066392.12, intron 3 of 18) protein_coding-intron (ENSMUSG00000066392.12, intron 4 of 19) 15876 ENSMUSG00000103136.1 ENSMUSG00000103136 ENSMUST00000194420 Gm37980 TEC Interval_110066 chr3 152942671 152943634 + 0 NA promoter-TSS (ENSMUSG00000090163.1) antisense-promoter-TSS (ENSMUSG00000090163.1) -161 ENSMUSG00000090163.1 ENSMUSG00000090163 ENSMUST00000160432 Gm16231 antisense Interval_6163 chr1 98402105 98402347 + 0 NA Intergenic Intergenic -55542 ENSMUSG00000089791.1 ENSMUSG00000089791 ENSMUST00000160287 Gm3555 processed_pseudogene Interval_115519 chr4 100059205 100059567 + 0 NA intron (ENSMUSG00000085142.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000085142.1, intron 1 of 1) 6866 ENSMUSG00000085142.1 ENSMUSG00000085142 ENSMUST00000123258 Gm12702 lincRNA Interval_159387 chr8 94236887 94237879 + 0 NA intron (ENSMUSG00000032939.14, intron 3 of 22) protein_coding-intron (ENSMUSG00000032939.14, intron 2 of 21) 14390 ENSMUSG00000110679.1 ENSMUSG00000110679 ENSMUST00000212707 Rpl10-ps5 processed_pseudogene Interval_116124 chr4 107966514 107967273 + 0 NA Intergenic Intergenic -1441 ENSMUSG00000008932.10 ENSMUSG00000008932 ENSMUST00000124190 Slc1a7 protein_coding Interval_98570 chr2 153308830 153309863 + 0 NA intron (ENSMUSG00000027475.9, intron 1 of 8) protein_coding-intron (ENSMUSG00000027475.9, intron 1 of 8) 17933 ENSMUSG00000027475.9 ENSMUSG00000027475 ENSMUST00000028977 Kif3b protein_coding Interval_171826 chr9 121472390 121473096 + 0 NA TTS (ENSMUSG00000032536.12) protein_coding-TTS (ENSMUSG00000032536.12) 21767 ENSMUSG00000032532.7 ENSMUSG00000032532 ENSMUST00000217581 Cck protein_coding Interval_99314 chr2 158874073 158874257 + 0 NA Intergenic Intergenic 46747 ENSMUSG00000027655.14 ENSMUSG00000027655 ENSMUST00000143195 Dhx35 protein_coding Interval_27676 chr11 69417316 69419363 + 0 NA Intergenic Intergenic -14124 ENSMUSG00000018476.7 ENSMUSG00000018476 ENSMUST00000156562 Kdm6b protein_coding Interval_156413 chr8 47989624 47991483 + 0 NA promoter-TSS (ENSMUSG00000031563.8) protein_coding-promoter-TSS (ENSMUSG00000031563.8) 371 ENSMUSG00000031563.8 ENSMUSG00000031563 ENSMUST00000212282 Wwc2 protein_coding Interval_138265 chr6 86716413 86717265 + 0 NA promoter-TSS (ENSMUSG00000001157.13) protein_coding-promoter-TSS (ENSMUSG00000001157.13) 54 ENSMUSG00000001157.13 ENSMUSG00000001157 ENSMUST00000113679 Gmcl1 protein_coding Interval_148339 chr7 80595669 80596011 + 0 NA TTS (ENSMUSG00000030527.15) protein_coding-TTS (ENSMUSG00000030527.15) 7943 ENSMUSG00000108643.1 ENSMUSG00000108643 ENSMUST00000206056 Gm44931 TEC Interval_102500 chr3 27228316 27229385 + 0 NA intron (ENSMUSG00000027698.14, intron 3 of 4) protein_coding-intron (ENSMUSG00000027698.14, intron 3 of 4) 40409 ENSMUSG00000027698.14 ENSMUSG00000027698 ENSMUST00000140872 Nceh1 protein_coding Interval_107541 chr3 108384992 108385261 + 0 NA promoter-TSS (ENSMUSG00000068744.12) protein_coding-promoter-TSS (ENSMUSG00000068744.12) 272 ENSMUSG00000068744.12 ENSMUSG00000068744 ENSMUST00000128962 Psrc1 protein_coding Interval_133112 chr5 149912036 149912396 + 0 NA Intergenic Intergenic 1964 ENSMUSG00000107112.1 ENSMUSG00000107112 ENSMUST00000201713 Gm36241 processed_transcript Interval_107648 chr3 109332866 109333281 + 0 NA Intergenic Intergenic -140206 ENSMUSG00000083717.1 ENSMUSG00000083717 ENSMUST00000120957 Gm13865 processed_pseudogene Interval_129886 chr5 122917876 122918778 + 0 NA promoter-TSS (ENSMUSG00000029475.17) protein_coding-promoter-TSS (ENSMUSG00000029475.17) 3221 ENSMUSG00000029475.17 ENSMUSG00000029475 ENSMUST00000150543 Kdm2b protein_coding Interval_60805 chr15 76870406 76872581 + 0 NA promoter-TSS (ENSMUSG00000022526.8) protein_coding-promoter-TSS (ENSMUSG00000022526.8) -508 ENSMUSG00000022526.8 ENSMUSG00000022526 ENSMUST00000230524 Zfp251 protein_coding Interval_30779 chr11 96415844 96416138 + 0 NA Intergenic Intergenic 23879 ENSMUSG00000075587.5 ENSMUSG00000075587 ENSMUST00000117614 Gm11531 processed_pseudogene Interval_96994 chr2 130336213 130336488 + 0 NA intron (ENSMUSG00000053552.14, intron 6 of 16) protein_coding-intron (ENSMUSG00000053552.14, intron 6 of 16) 40411 ENSMUSG00000053552.14 ENSMUSG00000053552 ENSMUST00000110287 Ebf4 protein_coding Interval_43439 chr13 30959323 30959642 + 0 NA intron (ENSMUSG00000021357.14, intron 1 of 1) protein_coding-intron (ENSMUSG00000021357.14, intron 1 of 27) -11723 ENSMUSG00000076430.1 ENSMUSG00000076430 ENSMUST00000102943 Hus1b protein_coding Interval_156743 chr8 57791151 57791644 + 0 NA intron (ENSMUSG00000096914.3, intron 12 of 12) protein_coding-intron (ENSMUSG00000096914.3, intron 7 of 7) 51661 ENSMUSG00000096914.3 ENSMUSG00000096914 ENSMUST00000203398 Galntl6 protein_coding Interval_86169 chr19 37526767 37527385 + 0 NA intron (ENSMUSG00000053799.8, intron 1 of 22) protein_coding-intron (ENSMUSG00000053799.8, intron 1 of 22) 6197 ENSMUSG00000053799.8 ENSMUSG00000053799 ENSMUST00000238817 Exoc6 protein_coding Interval_143892 chr7 16979972 16980676 + 0 NA Intergenic Intergenic -2762 ENSMUSG00000108348.2 ENSMUSG00000108348 ENSMUST00000206129 Gm42372 protein_coding Interval_152439 chr7 133029497 133030506 + 0 NA exon (ENSMUSG00000030970.16, exon 1 of 4) protein_coding-exon (ENSMUSG00000030970.16, exon 1 of 4) -46449 ENSMUSG00000085663.1 ENSMUSG00000085663 ENSMUST00000131085 Gm15718 antisense Interval_168075 chr9 75911263 75911667 + 0 NA promoter-TSS (ENSMUSG00000105435.1) miRNA-promoter-TSS (ENSMUSG00000105435.1) 43 ENSMUSG00000105435.1 ENSMUSG00000105435 ENSMUST00000200417 Gm44355 miRNA Interval_18454 chr10 86146680 86146930 + 0 NA intron (ENSMUSG00000059602.14, intron 6 of 8) protein_coding-intron (ENSMUSG00000059602.14, intron 6 of 13) 20978 ENSMUSG00000087256.1 ENSMUSG00000087256 ENSMUST00000132223 Gm15990 antisense Interval_174801 chrX 166773434 166773817 + 0 NA Intergenic Intergenic -80586 ENSMUSG00000067147.7 ENSMUSG00000067147 ENSMUST00000118791 Rpl7a-ps11 processed_pseudogene Interval_141367 chr6 127723145 127723836 + 0 NA intron (ENSMUSG00000030350.8, intron 4 of 9) protein_coding-intron (ENSMUSG00000030350.8, intron 4 of 9) -40258 ENSMUSG00000106833.1 ENSMUSG00000106833 ENSMUST00000200687 Gm42739 processed_pseudogene Interval_63927 chr16 4611596 4611942 + 0 NA exon (ENSMUSG00000014303.13, exon 6 of 7) protein_coding-exon (ENSMUSG00000014303.13, exon 6 of 7) 10606 ENSMUSG00000014303.13 ENSMUSG00000014303 ENSMUST00000127120 Glis2 protein_coding Interval_139289 chr6 97951664 97953152 + 0 NA intron (ENSMUSG00000035158.15, intron 2 of 9) protein_coding-intron (ENSMUSG00000035158.15, intron 2 of 9) -39513 ENSMUSG00000035158.15 ENSMUSG00000035158 ENSMUST00000203938 Mitf protein_coding Interval_5169 chr1 86213776 86214566 + 0 NA TTS (ENSMUSG00000062590.13) protein_coding-TTS (ENSMUSG00000062590.13) 59372 ENSMUSG00000062590.13 ENSMUSG00000062590 ENSMUST00000126579 Armc9 protein_coding Interval_151290 chr7 120718790 120719030 + 0 NA intron (ENSMUSG00000046096.7, intron 1 of 2) protein_coding-intron (ENSMUSG00000046096.7, intron 1 of 2) -7266 ENSMUSG00000046096.7 ENSMUSG00000046096 ENSMUST00000208534 Mosmo protein_coding Interval_132447 chr5 144973102 144973606 + 0 NA Intergenic Intergenic -46824 ENSMUSG00000105177.1 ENSMUSG00000105177 ENSMUST00000196761 Gm43563 unprocessed_pseudogene Interval_25914 chr11 52521796 52522081 + 0 NA Intergenic Intergenic -34628 ENSMUSG00000083129.1 ENSMUSG00000083129 ENSMUST00000118245 Gm12210 processed_pseudogene Interval_3736 chr1 62661087 62661421 + 0 NA exon (ENSMUSG00000084333.1, exon 1 of 1) processed_pseudogene-exon (ENSMUSG00000084333.1, exon 1 of 1) 415 ENSMUSG00000084333.1 ENSMUSG00000084333 ENSMUST00000118720 Gm11599 processed_pseudogene Interval_63466 chr15 101238859 101239649 + 0 NA Intergenic Intergenic -14068 ENSMUSG00000097915.2 ENSMUSG00000097915 ENSMUST00000229239 A330009N23Rik antisense Interval_42048 chr13 6877248 6877893 + 0 NA Intergenic Intergenic 48281 ENSMUSG00000113932.1 ENSMUSG00000113932 ENSMUST00000220700 2900024D18Rik TEC Interval_123908 chr5 36445394 36446745 + 0 NA Intergenic Intergenic 18784 ENSMUSG00000039563.6 ENSMUSG00000039563 ENSMUST00000151434 2210406O10Rik lincRNA Interval_113311 chr4 53377256 53377868 + 0 NA Intergenic Intergenic 26468 ENSMUSG00000086267.1 ENSMUSG00000086267 ENSMUST00000154377 Gm12496 lincRNA Interval_99216 chr2 158145800 158146950 + 0 NA promoter-TSS (ENSMUSG00000037820.15) protein_coding-promoter-TSS (ENSMUSG00000037820.15) 18 ENSMUSG00000037820.15 ENSMUSG00000037820 ENSMUST00000152690 Tgm2 protein_coding Interval_120879 chr4 151239104 151239534 + 0 NA intron (ENSMUSG00000014592.21, intron 6 of 24) protein_coding-intron (ENSMUSG00000014592.21, intron 6 of 23) -137151 ENSMUSG00000085593.1 ENSMUSG00000085593 ENSMUST00000129097 4930589P08Rik antisense Interval_59971 chr15 62457079 62458527 + 0 NA Intergenic Intergenic -110172 ENSMUSG00000115862.1 ENSMUSG00000115862 ENSMUST00000230029 Gm41333 lincRNA Interval_31304 chr11 99464799 99465025 + 0 NA Intergenic Intergenic -26762 ENSMUSG00000035775.2 ENSMUSG00000035775 ENSMUST00000017743 Krt20 protein_coding Interval_126638 chr5 91436814 91437263 + 0 NA Intergenic Intergenic -34216 ENSMUSG00000082361.6 ENSMUSG00000082361 ENSMUST00000201090 Btc protein_coding Interval_38094 chr12 75622695 75622996 + 0 NA Intergenic Intergenic 8473 ENSMUSG00000118552.1 ENSMUSG00000118552 ENSMUST00000238938 AC124742.1 protein_coding Interval_37096 chr12 57941357 57941937 + 0 NA Intergenic Intergenic -9564 ENSMUSG00000112704.1 ENSMUSG00000112704 ENSMUST00000218373 Gm46329 lincRNA Interval_75214 chr17 64765285 64765509 + 0 NA Intergenic Intergenic -1714 ENSMUSG00000117105.1 ENSMUSG00000117105 ENSMUST00000233348 Dreh lincRNA Interval_167568 chr9 70510938 70511943 + 0 NA Intergenic Intergenic -5760 ENSMUSG00000088284.1 ENSMUSG00000088284 ENSMUST00000157659 Gm23588 snRNA Interval_38769 chr12 82189185 82190051 + 0 NA intron (ENSMUSG00000042700.16, intron 2 of 3) protein_coding-intron (ENSMUSG00000042700.16, intron 1 of 22) 20142 ENSMUSG00000042700.16 ENSMUSG00000042700 ENSMUST00000221327 Sipa1l1 protein_coding Interval_101095 chr2 177910806 177911052 + 0 NA intron (ENSMUSG00000074529.10, intron 2 of 2) protein_coding-intron (ENSMUSG00000074529.10, intron 2 of 2) 10886 ENSMUSG00000074529.10 ENSMUSG00000074529 ENSMUST00000108986 Zfp972 protein_coding Interval_82363 chr18 72940051 72940386 + 0 NA Intergenic Intergenic -19128 ENSMUSG00000118316.1 ENSMUSG00000118316 ENSMUST00000236243 Gm31908 lincRNA Interval_88515 chr2 5765046 5765251 + 0 NA Intergenic Intergenic -50645 ENSMUSG00000039145.16 ENSMUSG00000039145 ENSMUST00000155927 Camk1d protein_coding Interval_121054 chr4 152477037 152478398 + 0 NA promoter-TSS (ENSMUSG00000028931.12) protein_coding-promoter-TSS (ENSMUSG00000028931.12) -278 ENSMUSG00000028931.12 ENSMUSG00000028931 ENSMUST00000162017 Kcnab2 protein_coding Interval_162289 chr8 126813775 126814212 + 0 NA TTS (ENSMUSG00000110697.1) lincRNA-TTS (ENSMUSG00000110697.1) -25240 ENSMUSG00000110498.1 ENSMUSG00000110498 ENSMUST00000212914 A630001O12Rik lincRNA Interval_42943 chr13 21714891 21718849 + 0 NA promoter-TSS (ENSMUSG00000094338.1) protein_coding-promoter-TSS (ENSMUSG00000094338.1) -66 ENSMUSG00000105014.1 ENSMUSG00000105014 ENSMUST00000196836 Gm44367 miRNA Interval_130019 chr5 123727313 123727815 + 0 NA TTS (ENSMUSG00000029422.15) protein_coding-TTS (ENSMUSG00000029422.15) -6790 ENSMUSG00000029427.11 ENSMUSG00000029427 ENSMUST00000200503 Zcchc8 protein_coding Interval_9574 chr1 159552023 159552342 + 0 NA intron (ENSMUSG00000015829.13, intron 1 of 1) protein_coding-intron (ENSMUSG00000015829.13, intron 1 of 22) 28341 ENSMUSG00000015829.13 ENSMUSG00000015829 ENSMUST00000192457 Tnr protein_coding Interval_11795 chr1 185478665 185479712 + 0 NA Intergenic Intergenic -8106 ENSMUSG00000102185.1 ENSMUSG00000102185 ENSMUST00000192616 5033404E19Rik transcribed_processed_pseudogene Interval_75324 chr17 65869551 65870581 + 0 NA intron (ENSMUSG00000024096.17, intron 1 of 9) protein_coding-intron (ENSMUSG00000024096.17, intron 1 of 9) 14337 ENSMUSG00000024096.17 ENSMUSG00000024096 ENSMUST00000233784 Ralbp1 protein_coding Interval_85317 chr19 24621803 24622056 + 0 NA Intergenic Intergenic -52079 ENSMUSG00000048572.5 ENSMUSG00000048572 ENSMUST00000057243 Tmem252 protein_coding Interval_24305 chr11 32226216 32226959 + 0 NA promoter-TSS (ENSMUSG00000020287.15) protein_coding-promoter-TSS (ENSMUSG00000020287.15) 57 ENSMUSG00000020287.15 ENSMUSG00000020287 ENSMUST00000138050 Mpg protein_coding Interval_80556 chr18 44097265 44097724 + 0 NA Intergenic Intergenic -7029 ENSMUSG00000061144.6 ENSMUSG00000061144 ENSMUST00000239465 Spink12 protein_coding Interval_35509 chr12 24061345 24061574 + 0 NA intron (ENSMUSG00000073158.4, intron 3 of 3) protein_coding-intron (ENSMUSG00000073158.4, intron 3 of 3) 35787 ENSMUSG00000073158.4 ENSMUSG00000073158 ENSMUST00000101538 9030624G23Rik protein_coding Interval_173349 chrX 82865473 82866581 + 0 NA Intergenic Intergenic 31472 ENSMUSG00000088097.1 ENSMUSG00000088097 ENSMUST00000157472 Gm23671 misc_RNA Interval_87911 chr19 57062928 57063170 + 0 NA intron (ENSMUSG00000025085.16, intron 11 of 20) protein_coding-intron (ENSMUSG00000025085.16, intron 13 of 25) -125811 ENSMUSG00000025083.18 ENSMUSG00000025083 ENSMUST00000132851 Afap1l2 protein_coding Interval_130159 chr5 124610904 124611483 + 0 NA intron (ENSMUSG00000029386.15, intron 8 of 17) protein_coding-intron (ENSMUSG00000029386.15, intron 8 of 18) 12444 ENSMUSG00000029386.15 ENSMUSG00000029386 ENSMUST00000130912 Tctn2 protein_coding Interval_42471 chr13 13911363 13911871 + 0 NA Intergenic Intergenic -1209 ENSMUSG00000114087.1 ENSMUSG00000114087 ENSMUST00000221351 Gm7046 processed_pseudogene Interval_70981 chr17 16974498 16974964 + 0 NA TTS (ENSMUSG00000060149.7) lincRNA-TTS (ENSMUSG00000060149.7) 23179 ENSMUSG00000060149.7 ENSMUSG00000060149 ENSMUST00000071374 BC002059 lincRNA Interval_144654 chr7 27354211 27356569 + 0 NA TTS (ENSMUSG00000011751.16) protein_coding-TTS (ENSMUSG00000011751.16) 381 ENSMUSG00000089832.8 ENSMUSG00000089832 ENSMUST00000157078 Shkbp1 protein_coding Interval_17237 chr10 75197937 75198228 + 0 NA Intergenic Intergenic 21706 ENSMUSG00000009681.10 ENSMUSG00000009681 ENSMUST00000219807 Bcr protein_coding Interval_96 GL456221.1 121867 123290 + 0 NA NA NA NA NA Interval_141831 chr6 134791729 134794665 + 0 NA promoter-TSS (ENSMUSG00000030203.17) protein_coding-promoter-TSS (ENSMUSG00000030203.17) -32097 ENSMUSG00000030203.17 ENSMUSG00000030203 ENSMUST00000149776 Dusp16 protein_coding Interval_43606 chr13 34060789 34061453 + 0 NA TTS (ENSMUSG00000038286.11) protein_coding-TTS (ENSMUSG00000038286.11) 595 ENSMUSG00000038286.11 ENSMUSG00000038286 ENSMUST00000223251 Bphl protein_coding Interval_56315 chr14 117160069 117161382 + 0 NA intron (ENSMUSG00000058571.11, intron 1 of 9) protein_coding-intron (ENSMUSG00000058571.11, intron 1 of 8) 235194 ENSMUSG00000058571.11 ENSMUSG00000058571 ENSMUST00000078849 Gpc6 protein_coding Interval_59021 chr15 41781940 41782157 + 0 NA intron (ENSMUSG00000097232.1, intron 1 of 3) protein_coding-intron (ENSMUSG00000022307.16, intron 3 of 15) 6863 ENSMUSG00000097232.1 ENSMUSG00000097232 ENSMUST00000180418 Gm26854 antisense Interval_90764 chr2 32380994 32381323 + 0 NA TTS (ENSMUSG00000039205.16) protein_coding-TTS (ENSMUSG00000039205.16) 704 ENSMUSG00000039195.4 ENSMUSG00000039195 ENSMUST00000048792 1110008P14Rik protein_coding Interval_1477 chr1 23948989 23949598 + 0 NA Intergenic Intergenic -39557 ENSMUSG00000026155.13 ENSMUSG00000026155 ENSMUST00000133398 Smap1 protein_coding Interval_168568 chr9 83639883 83640956 + 0 NA Intergenic Intergenic 47106 ENSMUSG00000111820.1 ENSMUSG00000111820 ENSMUST00000214393 Gm36120 lincRNA Interval_121215 chr4 154109343 154109967 + 0 NA intron (ENSMUSG00000029026.17, intron 1 of 13) protein_coding-intron (ENSMUSG00000029026.17, intron 1 of 13) 16176 ENSMUSG00000087071.1 ENSMUSG00000087071 ENSMUST00000143429 Trp73os antisense Interval_128325 chr5 112560763 112561093 + 0 NA intron (ENSMUSG00000058153.15, intron 1 of 14) protein_coding-intron (ENSMUSG00000058153.15, intron 1 of 16) 15940 ENSMUSG00000058153.15 ENSMUSG00000058153 ENSMUST00000212758 Sez6l protein_coding Interval_22275 chr11 8482569 8483264 + 0 NA intron (ENSMUSG00000020422.14, intron 17 of 30) protein_coding-intron (ENSMUSG00000020422.14, intron 17 of 30) -99063 ENSMUSG00000083553.1 ENSMUSG00000083553 ENSMUST00000117240 Gm11989 processed_pseudogene Interval_146785 chr7 51268664 51269493 + 0 NA Intergenic Intergenic 98561 ENSMUSG00000108963.1 ENSMUSG00000108963 ENSMUST00000208113 Gm16478 processed_pseudogene Interval_29230 chr11 81803297 81803898 + 0 NA intron (ENSMUSG00000020704.13, intron 1 of 9) protein_coding-intron (ENSMUSG00000020704.13, intron 1 of 9) -57076 ENSMUSG00000020703.3 ENSMUSG00000020703 ENSMUST00000021044 5530401A14Rik protein_coding Interval_84464 chr19 11292296 11293904 + 0 NA intron (ENSMUSG00000097091.1, intron 2 of 2) antisense-intron (ENSMUSG00000097091.1, intron 2 of 2) -13657 ENSMUSG00000054523.13 ENSMUSG00000054523 ENSMUST00000188267 Ms4a5 protein_coding Interval_135271 chr6 37956050 37956438 + 0 NA intron (ENSMUSG00000029833.17, intron 12 of 18) protein_coding-intron (ENSMUSG00000029833.17, intron 12 of 18) 62367 ENSMUSG00000029830.15 ENSMUSG00000029830 ENSMUST00000040486 Svopl protein_coding Interval_171755 chr9 120744515 120745741 + 0 NA intron (ENSMUSG00000111831.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000111831.1, intron 1 of 1) 6015 ENSMUSG00000111831.1 ENSMUSG00000111831 ENSMUST00000215385 Gm47064 lincRNA Interval_83225 chr18 82867867 82868743 + 0 NA intron (ENSMUSG00000097738.2, intron 1 of 1) lincRNA-intron (ENSMUSG00000097738.2, intron 1 of 1) 12411 ENSMUSG00000097738.2 ENSMUSG00000097738 ENSMUST00000180631 4930445N18Rik lincRNA Interval_56074 chr14 105323644 105324067 + 0 NA Intergenic Intergenic -30871 ENSMUSG00000086260.1 ENSMUSG00000086260 ENSMUST00000145241 Gm16259 processed_pseudogene Interval_19348 chr10 97375746 97376527 + 0 NA Intergenic Intergenic -47342 ENSMUSG00000105557.1 ENSMUSG00000105557 ENSMUST00000198473 Mir3966 miRNA Interval_100707 chr2 171862146 171863457 + 0 NA Intergenic Intergenic 99330 ENSMUSG00000086823.7 ENSMUSG00000086823 ENSMUST00000125465 1700028P15Rik processed_transcript Interval_170225 chr9 106304042 106304375 + 0 NA intron (ENSMUSG00000023345.17, intron 2 of 5) protein_coding-intron (ENSMUSG00000023345.17, intron 7 of 10) 22598 ENSMUSG00000023345.17 ENSMUSG00000023345 ENSMUST00000186366 Poc1a protein_coding Interval_144198 chr7 19913879 19914242 + 0 NA TTS (ENSMUSG00000040511.14) protein_coding-TTS (ENSMUSG00000040511.14) 702 ENSMUSG00000040511.14 ENSMUSG00000040511 ENSMUST00000159261 Pvr protein_coding Interval_85457 chr19 26706656 26708260 + 0 NA intron (ENSMUSG00000024921.17, intron 1 of 6) protein_coding-intron (ENSMUSG00000024921.17, intron 24 of 32) -40944 ENSMUSG00000024921.17 ENSMUSG00000024921 ENSMUST00000208984 Smarca2 protein_coding Interval_74120 chr17 46623739 46624621 + 0 NA intron (ENSMUSG00000023972.10, intron 1 of 19) protein_coding-intron (ENSMUSG00000023972.10, intron 1 of 19) 21842 ENSMUSG00000003546.10 ENSMUSG00000003546 ENSMUST00000003642 Klc4 protein_coding Interval_43935 chr13 38150844 38152980 + 0 NA promoter-TSS (ENSMUSG00000103789.1) TEC-promoter-TSS (ENSMUSG00000103789.1) -120 ENSMUSG00000103789.1 ENSMUSG00000103789 ENSMUST00000191991 Gm10129 TEC Interval_40043 chr12 100765764 100766047 + 0 NA Intergenic Intergenic 3223 ENSMUSG00000064572.1 ENSMUSG00000064572 ENSMUST00000082638 Gm25801 snRNA Interval_4978 chr1 83159582 83160124 + 0 NA promoter-TSS (ENSMUSG00000053161.16) protein_coding-promoter-TSS (ENSMUSG00000053161.16) 84 ENSMUSG00000053161.16 ENSMUSG00000053161 ENSMUST00000065403 Daw1 protein_coding Interval_63564 chr15 102073386 102074724 + 0 NA intron (ENSMUSG00000058655.9, intron 1 of 8) protein_coding-intron (ENSMUSG00000058655.9, intron 1 of 14) 191 ENSMUSG00000058655.9 ENSMUSG00000058655 ENSMUST00000229254 Eif4b protein_coding Interval_152106 chr7 129420627 129421901 + 0 NA Intergenic Intergenic -18174 ENSMUSG00000108713.1 ENSMUSG00000108713 ENSMUST00000206093 Gm33027 lincRNA Interval_168249 chr9 78190286 78192388 + 0 NA promoter-TSS (ENSMUSG00000032348.6) protein_coding-promoter-TSS (ENSMUSG00000032348.6) 8563 ENSMUSG00000032348.6 ENSMUSG00000032348 ENSMUST00000034903 Gsta4 protein_coding Interval_158939 chr8 88110898 88111549 + 0 NA TTS (ENSMUSG00000118626.1) processed_pseudogene-TTS (ENSMUSG00000118626.1) 1437 ENSMUSG00000118626.1 ENSMUSG00000118626 ENSMUST00000239289 AC127285.1 processed_pseudogene Interval_6767 chr1 119355570 119355791 + 0 NA intron (ENSMUSG00000101179.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000101179.1, intron 1 of 2) 26480 ENSMUSG00000101179.1 ENSMUSG00000101179 ENSMUST00000186504 Gm29455 lincRNA Interval_39208 chr12 85850492 85851009 + 0 NA intron (ENSMUSG00000012609.19, intron 6 of 6) protein_coding-intron (ENSMUSG00000012609.19, intron 6 of 33) -28500 ENSMUSG00000021252.11 ENSMUSG00000021252 ENSMUST00000142331 Erg28 protein_coding Interval_97041 chr2 130738191 130738576 + 0 NA TTS (ENSMUSG00000027309.18) protein_coding-TTS (ENSMUSG00000027309.18) 1117 ENSMUSG00000027309.18 ENSMUSG00000027309 ENSMUST00000146975 4930402H24Rik protein_coding Interval_87574 chr19 53521390 53521645 + 0 NA Intergenic Intergenic -7592 ENSMUSG00000034765.6 ENSMUSG00000034765 ENSMUST00000038287 Dusp5 protein_coding Interval_105342 chr3 85185659 85187160 + 0 NA intron (ENSMUSG00000102805.5, intron 3 of 9) protein_coding-intron (ENSMUSG00000102805.5, intron 3 of 9) 10038 ENSMUSG00000102703.1 ENSMUSG00000102703 ENSMUST00000191953 Gm38313 TEC Interval_157851 chr8 74970229 74972738 + 0 NA Intergenic Intergenic -28386 ENSMUSG00000034518.14 ENSMUSG00000034518 ENSMUST00000129391 Hmgxb4 protein_coding Interval_156581 chr8 53047170 53047422 + 0 NA Intergenic Intergenic 40888 ENSMUSG00000088678.1 ENSMUSG00000088678 ENSMUST00000158053 Gm23666 snoRNA Interval_504 chr1 6568667 6568856 + 0 NA intron (ENSMUSG00000033740.17, intron 2 of 22) protein_coding-intron (ENSMUSG00000033740.17, intron 2 of 22) -127465 ENSMUSG00000103845.1 ENSMUSG00000103845 ENSMUST00000194240 Gm19026 processed_pseudogene Interval_112151 chr4 34958317 34959022 + 0 NA intron (ENSMUSG00000073910.10, intron 3 of 3) protein_coding-intron (ENSMUSG00000073910.10, intron 3 of 3) -3551 ENSMUSG00000086792.1 ENSMUSG00000086792 ENSMUST00000144419 Gm12364 antisense Interval_106444 chr3 96398671 96399211 + 0 NA Intergenic Intergenic 3073 ENSMUSG00000097539.1 ENSMUSG00000097539 ENSMUST00000181412 4930477E14Rik lincRNA Interval_55738 chr14 99441835 99442566 + 0 NA exon (ENSMUSG00000115178.1, exon 1 of 1) processed_pseudogene-exon (ENSMUSG00000115178.1, exon 1 of 1) 543 ENSMUSG00000115178.1 ENSMUSG00000115178 ENSMUST00000227904 Gm49220 processed_pseudogene Interval_14051 chr10 26192749 26193005 + 0 NA Intergenic Intergenic -37249 ENSMUSG00000051354.14 ENSMUSG00000051354 ENSMUST00000219738 Samd3 protein_coding Interval_69546 chr16 94155053 94155672 + 0 NA intron (ENSMUSG00000040820.16, intron 2 of 6) protein_coding-intron (ENSMUSG00000040820.16, intron 5 of 9) 14049 ENSMUSG00000076304.1 ENSMUSG00000076304 ENSMUST00000102349 Gm23062 miRNA Interval_65999 chr16 30806269 30806750 + 0 NA Intergenic Intergenic -7653 ENSMUSG00000095791.1 ENSMUSG00000095791 ENSMUST00000179690 Gm26295 snRNA Interval_61890 chr15 84975757 84975990 + 0 NA intron (ENSMUSG00000036046.14, intron 1 of 3) protein_coding-intron (ENSMUSG00000036046.14, intron 1 of 9) 12678 ENSMUSG00000036046.14 ENSMUSG00000036046 ENSMUST00000170863 5031439G07Rik protein_coding Interval_28327 chr11 75219731 75220518 + 0 NA intron (ENSMUSG00000045287.6, intron 1 of 1) protein_coding-intron (ENSMUSG00000045287.6, intron 1 of 1) 26341 ENSMUSG00000045287.6 ENSMUSG00000045287 ENSMUST00000102514 Rtn4rl1 protein_coding Interval_12554 chr1 195232288 195233058 + 0 NA Intergenic Intergenic 4395 ENSMUSG00000093823.1 ENSMUSG00000093823 ENSMUST00000178897 Gm24802 miRNA Interval_16468 chr10 63034963 63035217 + 0 NA intron (ENSMUSG00000020072.15, intron 1 of 9) protein_coding-intron (ENSMUSG00000020072.15, intron 1 of 9) -17006 ENSMUSG00000020069.16 ENSMUSG00000020069 ENSMUST00000119814 Hnrnph3 protein_coding Interval_142332 chr6 140677053 140677843 + 0 NA exon (ENSMUSG00000030232.18, exon 9 of 9) protein_coding-exon (ENSMUSG00000030232.18, exon 9 of 9) 40710 ENSMUSG00000030232.18 ENSMUSG00000030232 ENSMUST00000160772 Aebp2 protein_coding Interval_172858 chrX 52193076 52193907 + 0 NA Intergenic Intergenic -28239 ENSMUSG00000031119.4 ENSMUSG00000031119 ENSMUST00000033450 Gpc4 protein_coding Interval_145498 chr7 35232879 35233368 + 0 NA Intergenic Intergenic 15888 ENSMUSG00000088307.1 ENSMUSG00000088307 ENSMUST00000157682 Gm24505 snoRNA Interval_146635 chr7 48928111 48929090 + 0 NA intron (ENSMUSG00000052512.17, intron 3 of 4) protein_coding-intron (ENSMUSG00000052512.17, intron 3 of 4) 11518 ENSMUSG00000109507.1 ENSMUSG00000109507 ENSMUST00000208249 Gm18559 processed_pseudogene Interval_73018 chr17 34161806 34163208 + 0 NA Intergenic Intergenic 5662 ENSMUSG00000079547.4 ENSMUSG00000079547 ENSMUST00000174765 H2-DMb1 protein_coding Interval_124558 chr5 50698341 50698569 + 0 NA Intergenic Intergenic 18739 ENSMUSG00000106038.1 ENSMUSG00000106038 ENSMUST00000199640 Gm4962 transcribed_processed_pseudogene Interval_127287 chr5 102112703 102113899 + 0 NA Intergenic Intergenic 43083 ENSMUSG00000106492.1 ENSMUSG00000106492 ENSMUST00000196325 Gm29707 lincRNA Interval_138736 chr6 91527339 91528329 + 0 NA intron (ENSMUSG00000108584.1, intron 2 of 3) sense_overlapping-intron (ENSMUSG00000108584.1, intron 2 of 3) 5425 ENSMUSG00000108584.1 ENSMUSG00000108584 ENSMUST00000205547 Gm45216 sense_overlapping Interval_149237 chr7 96543966 96544698 + 0 NA intron (ENSMUSG00000048078.16, intron 1 of 2) protein_coding-intron (ENSMUSG00000048078.16, intron 4 of 32) 84737 ENSMUSG00000085792.2 ENSMUSG00000085792 ENSMUST00000155217 Gm15414 antisense Interval_83002 chr18 80286234 80287887 + 0 NA intron (ENSMUSG00000034006.17, intron 4 of 4) protein_coding-intron (ENSMUSG00000034006.17, intron 4 of 4) 16620 ENSMUSG00000102959.1 ENSMUSG00000102959 ENSMUST00000192763 Gm37015 TEC Interval_107535 chr3 108347718 108348235 + 0 NA intron (ENSMUSG00000068747.14, intron 14 of 20) protein_coding-intron (ENSMUSG00000068747.14, intron 14 of 19) -13575 ENSMUSG00000078601.4 ENSMUSG00000078601 ENSMUST00000125412 Gm12525 lincRNA Interval_157124 chr8 65617777 65618975 + 0 NA promoter-TSS (ENSMUSG00000036469.16) protein_coding-promoter-TSS (ENSMUSG00000036469.16) 49325 ENSMUSG00000064763.1 ENSMUSG00000064763 ENSMUST00000082829 Gm23515 snRNA Interval_152990 chr7 140585699 140586206 + 0 NA Intergenic Intergenic -15317 ENSMUSG00000093942.3 ENSMUSG00000093942 ENSMUST00000072655 Olfr46 protein_coding Interval_60322 chr15 72867291 72867458 + 0 NA intron (ENSMUSG00000047921.17, intron 16 of 16) protein_coding-intron (ENSMUSG00000047921.17, intron 16 of 21) -45983 ENSMUSG00000096173.2 ENSMUSG00000096173 ENSMUST00000166418 Gm3150 processed_pseudogene Interval_62451 chr15 93096972 93097973 + 0 NA Intergenic Intergenic 8242 ENSMUSG00000115921.1 ENSMUSG00000115921 ENSMUST00000229620 Gm18685 processed_pseudogene Interval_19318 chr10 96646430 96647666 + 0 NA Intergenic Intergenic 29494 ENSMUSG00000036478.8 ENSMUSG00000036478 ENSMUST00000218953 Btg1 protein_coding Interval_73558 chr17 40445683 40445928 + 0 NA Intergenic Intergenic -3471 ENSMUSG00000117073.1 ENSMUSG00000117073 ENSMUST00000233909 Gm49843 unprocessed_pseudogene Interval_133760 chr6 11748504 11749912 + 0 NA Intergenic Intergenic 158275 ENSMUSG00000029632.7 ENSMUSG00000029632 ENSMUST00000204714 Ndufa4 protein_coding Interval_109715 chr3 146240907 146241101 + 0 NA exon (ENSMUSG00000036832.5, exon 2 of 3) protein_coding-exon (ENSMUSG00000036832.5, exon 2 of 3) 20041 ENSMUSG00000036832.5 ENSMUSG00000036832 ENSMUST00000039164 Lpar3 protein_coding Interval_36289 chr12 40760250 40761015 + 0 NA intron (ENSMUSG00000035954.10, intron 26 of 31) protein_coding-intron (ENSMUSG00000035954.10, intron 26 of 52) -114905 ENSMUSG00000113435.1 ENSMUSG00000113435 ENSMUST00000221545 Gm19441 processed_pseudogene Interval_170759 chr9 110568505 110568923 + 0 NA TTS (ENSMUSG00000044791.16) protein_coding-TTS (ENSMUSG00000044791.16) -4908 ENSMUSG00000044791.16 ENSMUSG00000044791 ENSMUST00000197260 Setd2 protein_coding Interval_40101 chr12 101227576 101227922 + 0 NA intron (ENSMUSG00000113134.2, intron 1 of 21) transcribed_unprocessed_pseudogene-intron (ENSMUSG00000113134.2, intron 1 of 21) -4051 ENSMUSG00000064424.1 ENSMUSG00000064424 ENSMUST00000082490 Gm22749 snRNA Interval_103263 chr3 37639737 37641252 + 0 NA exon (ENSMUSG00000037211.12, exon 1 of 2) protein_coding-exon (ENSMUSG00000037211.12, exon 1 of 2) 162 ENSMUSG00000104605.1 ENSMUSG00000104605 ENSMUST00000195887 Gm42922 TEC Interval_167997 chr9 75328965 75329190 + 0 NA intron (ENSMUSG00000032192.9, intron 2 of 10) protein_coding-intron (ENSMUSG00000032192.9, intron 3 of 11) -2806 ENSMUSG00000032192.9 ENSMUSG00000032192 ENSMUST00000215891 Gnb5 protein_coding Interval_30908 chr11 97176127 97177431 + 0 NA intron (ENSMUSG00000001440.5, intron 8 of 21) protein_coding-intron (ENSMUSG00000001440.5, intron 8 of 21) -11379 ENSMUSG00000001440.5 ENSMUSG00000001440 ENSMUST00000153727 Kpnb1 protein_coding Interval_115649 chr4 101604480 101605089 + 0 NA intron (ENSMUSG00000028528.17, intron 4 of 11) protein_coding-intron (ENSMUSG00000028528.17, intron 4 of 18) -43009 ENSMUSG00000035212.14 ENSMUSG00000035212 ENSMUST00000106927 Leprot protein_coding Interval_22063 chr11 6086791 6087045 + 0 NA Intergenic Intergenic 86118 ENSMUSG00000083022.1 ENSMUSG00000083022 ENSMUST00000117476 Rps15a-ps6 processed_pseudogene Interval_145326 chr7 33656083 33656300 + 0 NA intron (ENSMUSG00000085312.1, intron 3 of 3) lincRNA-intron (ENSMUSG00000085312.1, intron 3 of 3) 2751 ENSMUSG00000085312.1 ENSMUSG00000085312 ENSMUST00000151344 Gm12763 lincRNA Interval_126578 chr5 90364951 90367167 + 0 NA promoter-TSS (ENSMUSG00000054945.4) bidirectional_promoter_lncRNA-promoter-TSS (ENSMUSG00000054945.4) 126 ENSMUSG00000055204.15 ENSMUSG00000055204 ENSMUST00000202226 Ankrd17 protein_coding Interval_61623 chr15 83010290 83011130 + 0 NA intron (ENSMUSG00000058099.16, intron 3 of 5) protein_coding-intron (ENSMUSG00000058099.16, intron 3 of 5) 12373 ENSMUSG00000058099.16 ENSMUSG00000058099 ENSMUST00000231204 Nfam1 protein_coding Interval_153503 chr7 145272926 145273430 + 0 NA TTS (ENSMUSG00000048677.9) protein_coding-TTS (ENSMUSG00000048677.9) 10744 ENSMUSG00000048677.9 ENSMUSG00000048677 ENSMUST00000209156 Tpcn2 protein_coding Interval_106850 chr3 101300417 101300951 + 0 NA Intergenic Intergenic 6395 ENSMUSG00000072381.3 ENSMUSG00000072381 ENSMUST00000097146 Gm10355 processed_pseudogene Interval_146611 chr7 47986903 47987450 + 0 NA Intergenic Intergenic -5081 ENSMUSG00000067173.3 ENSMUSG00000067173 ENSMUST00000087092 Mrgpra4 protein_coding Interval_49388 chr13 111616028 111616663 + 0 NA promoter-TSS (ENSMUSG00000086649.1) processed_transcript-promoter-TSS (ENSMUSG00000086649.1) -22734 ENSMUSG00000096842.1 ENSMUSG00000096842 ENSMUST00000179668 Gm10736 processed_pseudogene Interval_96110 chr2 119817165 119819195 + 0 NA TTS (ENSMUSG00000027298.17) protein_coding-TTS (ENSMUSG00000027298.17) 18853 ENSMUSG00000027298.17 ENSMUSG00000027298 ENSMUST00000137135 Tyro3 protein_coding Interval_41541 chr12 116146997 116147844 + 0 NA Intergenic Intergenic 4801 ENSMUSG00000105984.1 ENSMUSG00000105984 ENSMUST00000199388 Gm44372 miRNA Interval_171795 chr9 121249630 121249889 + 0 NA intron (ENSMUSG00000040936.15, intron 15 of 36) protein_coding-intron (ENSMUSG00000040936.15, intron 15 of 33) 2442 ENSMUSG00000091336.1 ENSMUSG00000091336 ENSMUST00000172397 Gm17157 processed_pseudogene Interval_24796 chr11 38126726 38126948 + 0 NA Intergenic Intergenic -89574 ENSMUSG00000093184.1 ENSMUSG00000093184 ENSMUST00000175443 Gm25693 miRNA Interval_159717 chr8 99093718 99093947 + 0 NA intron (ENSMUSG00000036510.17, intron 10 of 12) protein_coding-intron (ENSMUSG00000036510.17, intron 10 of 12) 21369 ENSMUSG00000065819.1 ENSMUSG00000065819 ENSMUST00000083885 Gm24693 snRNA Interval_53318 chr14 56115523 56117327 + 0 NA Intergenic Intergenic 4200 ENSMUSG00000022156.8 ENSMUSG00000022156 ENSMUST00000089549 Gzme protein_coding Interval_95417 chr2 108906133 108906344 + 0 NA Intergenic Intergenic -30980 ENSMUSG00000083424.3 ENSMUSG00000083424 ENSMUST00000121779 Rpl35a-ps4 processed_pseudogene Interval_18583 chr10 88169520 88169828 + 0 NA intron (ENSMUSG00000035351.16, intron 5 of 9) protein_coding-intron (ENSMUSG00000035351.16, intron 5 of 9) -4601 ENSMUSG00000088843.1 ENSMUSG00000088843 ENSMUST00000158218 Gm26357 snRNA Interval_94562 chr2 92240911 92241299 + 0 NA intron (ENSMUSG00000058318.15, intron 6 of 6) protein_coding-intron (ENSMUSG00000058318.15, intron 4 of 15) 8000 ENSMUSG00000083951.1 ENSMUSG00000083951 ENSMUST00000122371 Gm13786 processed_pseudogene Interval_19576 chr10 103560376 103560797 + 0 NA intron (ENSMUSG00000112319.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000112319.1, intron 1 of 1) -7060 ENSMUSG00000112644.1 ENSMUSG00000112644 ENSMUST00000218950 Gm47220 processed_pseudogene Interval_79954 chr18 36242001 36242990 + 0 NA Intergenic Intergenic -38602 ENSMUSG00000043991.5 ENSMUSG00000043991 ENSMUST00000051301 Pura protein_coding Interval_27588 chr11 68892287 68893446 + 0 NA exon (ENSMUSG00000046490.7, exon 3 of 3) protein_coding-exon (ENSMUSG00000046490.7, exon 3 of 3) 4313 ENSMUSG00000046490.7 ENSMUSG00000046490 ENSMUST00000065213 Rnf222 protein_coding Interval_60487 chr15 74276289 74276526 + 0 NA Intergenic Intergenic 164037 ENSMUSG00000118581.1 ENSMUSG00000118581 ENSMUST00000239328 AC119183.1 unitary_pseudogene Interval_146631 chr7 48897402 48898210 + 0 NA intron (ENSMUSG00000110093.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000110093.1, intron 1 of 2) 10576 ENSMUSG00000085995.2 ENSMUSG00000085995 ENSMUST00000208790 Gm2788 processed_transcript Interval_17236 chr10 75191553 75192073 + 0 NA Intergenic Intergenic 15437 ENSMUSG00000009681.10 ENSMUSG00000009681 ENSMUST00000219807 Bcr protein_coding Interval_75151 chr17 64053249 64054196 + 0 NA intron (ENSMUSG00000000127.15, intron 14 of 17) protein_coding-intron (ENSMUSG00000000127.15, intron 14 of 17) -189931 ENSMUSG00000045506.3 ENSMUSG00000045506 ENSMUST00000050753 A930002H24Rik protein_coding Interval_67147 chr16 43915940 43916141 + 0 NA intron (ENSMUSG00000022701.18, intron 6 of 15) protein_coding-intron (ENSMUSG00000022701.18, intron 6 of 7) 26240 ENSMUSG00000022701.18 ENSMUSG00000022701 ENSMUST00000122440 Ccdc191 protein_coding Interval_13379 chr10 17574519 17576899 + 0 NA intron (ENSMUSG00000112629.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000112629.1, intron 1 of 2) -48795 ENSMUSG00000111927.1 ENSMUSG00000111927 ENSMUST00000220318 Gm47770 lincRNA Interval_169443 chr9 97341151 97342363 + 0 NA Intergenic Intergenic -7859 ENSMUSG00000087167.1 ENSMUSG00000087167 ENSMUST00000127307 Gm15891 antisense Interval_72383 chr17 29512789 29513553 + 0 NA Intergenic Intergenic 20134 ENSMUSG00000024014.8 ENSMUSG00000024014 ENSMUST00000234270 Pim1 protein_coding Interval_23708 chr11 24952315 24952527 + 0 NA Intergenic Intergenic -26371 ENSMUSG00000087145.7 ENSMUSG00000087145 ENSMUST00000126063 Gm12665 lincRNA Interval_118579 chr4 132608012 132609197 + 0 NA Intergenic Intergenic -30442 ENSMUSG00000028886.15 ENSMUSG00000028886 ENSMUST00000130833 Eya3 protein_coding Interval_75551 chr17 67968694 67969535 + 0 NA intron (ENSMUSG00000024043.13, intron 1 of 17) protein_coding-intron (ENSMUSG00000024043.13, intron 1 of 17) -96066 ENSMUSG00000024043.13 ENSMUSG00000024043 ENSMUST00000170581 Arhgap28 protein_coding Interval_71151 chr17 20306452 20307684 + 0 NA Intergenic Intergenic -21515 ENSMUSG00000091656.2 ENSMUSG00000091656 ENSMUST00000233933 Vmn2r106 protein_coding Interval_121293 chr4 154774020 154774628 + 0 NA Intergenic Intergenic -63135 ENSMUSG00000046637.3 ENSMUSG00000046637 ENSMUST00000137684 Ttc34 protein_coding Interval_55844 chr14 101419540 101419943 + 0 NA Intergenic Intergenic 76197 ENSMUSG00000115538.1 ENSMUSG00000115538 ENSMUST00000227762 Hspd1-ps5 processed_pseudogene Interval_118300 chr4 130145127 130145631 + 0 NA Intergenic Intergenic -7751 ENSMUSG00000028778.15 ENSMUSG00000028778 ENSMUST00000164887 Hcrtr1 protein_coding Interval_152397 chr7 132756965 132757527 + 0 NA intron (ENSMUSG00000030956.15, intron 3 of 3) protein_coding-intron (ENSMUSG00000030956.15, intron 4 of 4) 45504 ENSMUSG00000030956.15 ENSMUSG00000030956 ENSMUST00000148303 Fam53b protein_coding Interval_53240 chr14 55515458 55515848 + 0 NA exon (ENSMUSG00000022212.15, exon 11 of 17) protein_coding-exon (ENSMUSG00000022212.15, exon 11 of 17) 3668 ENSMUSG00000022212.15 ENSMUSG00000022212 ENSMUST00000171643 Cpne6 protein_coding Interval_86731 chr19 43478693 43479386 + 0 NA intron (ENSMUSG00000025189.9, intron 7 of 11) protein_coding-intron (ENSMUSG00000025189.9, intron 6 of 10) 7365 ENSMUSG00000025189.9 ENSMUSG00000025189 ENSMUST00000225191 Cnnm1 protein_coding Interval_94152 chr2 84714567 84716246 + 0 NA promoter-TSS (ENSMUSG00000034075.10) protein_coding-promoter-TSS (ENSMUSG00000034075.10) -720 ENSMUSG00000034075.10 ENSMUSG00000034075 ENSMUST00000125690 Zdhhc5 protein_coding Interval_93151 chr2 70650108 70650549 + 0 NA Intergenic Intergenic 11781 ENSMUSG00000097025.2 ENSMUSG00000097025 ENSMUST00000180559 Gm26558 antisense Interval_16867 chr10 69359373 69361102 + 0 NA Intergenic Intergenic -9407 ENSMUSG00000019942.13 ENSMUSG00000019942 ENSMUST00000124054 Cdk1 protein_coding Interval_56210 chr14 112947313 112947666 + 0 NA Intergenic Intergenic -9879 ENSMUSG00000115786.1 ENSMUSG00000115786 ENSMUST00000227924 Gm4486 processed_pseudogene Interval_171262 chr9 115762028 115764263 + 0 NA Intergenic Intergenic 82402 ENSMUSG00000110905.1 ENSMUSG00000110905 ENSMUST00000215982 Gm48007 lincRNA Interval_56370 chr14 118175024 118175899 + 0 NA Intergenic Intergenic -36837 ENSMUSG00000115774.1 ENSMUSG00000115774 ENSMUST00000227956 4933431J24Rik lincRNA Interval_93663 chr2 75673018 75673295 + 0 NA Intergenic Intergenic 13682 ENSMUSG00000089015.1 ENSMUSG00000089015 ENSMUST00000158390 Gm24996 snRNA Interval_75860 chr17 71986124 71987788 + 0 NA intron (ENSMUSG00000055471.7, intron 6 of 28) protein_coding-intron (ENSMUSG00000055471.7, intron 6 of 28) -59926 ENSMUSG00000117126.1 ENSMUSG00000117126 ENSMUST00000233690 Gm49924 TEC Interval_88430 chr2 5012079 5013276 + 0 NA promoter-TSS (ENSMUSG00000026669.14) protein_coding-promoter-TSS (ENSMUSG00000026669.14) -17839 ENSMUSG00000026669.14 ENSMUSG00000026669 ENSMUST00000125851 Mcm10 protein_coding Interval_9278 chr1 155784827 155787118 + 0 NA intron (ENSMUSG00000033684.14, intron 8 of 12) protein_coding-intron (ENSMUSG00000033684.14, intron 8 of 11) -3152 ENSMUSG00000102299.1 ENSMUSG00000102299 ENSMUST00000192644 Gm37539 TEC Interval_28988 chr11 79745545 79746083 + 0 NA Intergenic Intergenic 19414 ENSMUSG00000065489.1 ENSMUSG00000065489 ENSMUST00000083555 Mir365-2 miRNA Interval_145142 chr7 30279680 30281157 + 0 NA promoter-TSS (ENSMUSG00000037020.16) protein_coding-promoter-TSS (ENSMUSG00000037020.16) -138 ENSMUSG00000013928.13 ENSMUSG00000013928 ENSMUST00000208866 Thap8 protein_coding Interval_73788 chr17 43651517 43652164 + 0 NA intron (ENSMUSG00000023912.10, intron 5 of 8) protein_coding-intron (ENSMUSG00000023912.10, intron 5 of 8) 15292 ENSMUSG00000023912.10 ENSMUSG00000023912 ENSMUST00000233442 Slc25a27 protein_coding Interval_27126 chr11 63165107 63165539 + 0 NA Intergenic Intergenic -8591 ENSMUSG00000085532.1 ENSMUSG00000085532 ENSMUST00000123420 B430319H21Rik lincRNA Interval_162966 chr9 13804894 13805474 + 0 NA intron (ENSMUSG00000031918.16, intron 15 of 15) protein_coding-intron (ENSMUSG00000031918.16, intron 14 of 14) 13725 ENSMUSG00000031922.12 ENSMUSG00000031922 ENSMUST00000124524 Cep57 protein_coding Interval_100002 chr2 166398918 166399834 + 0 NA Intergenic Intergenic -1219 ENSMUSG00000087617.1 ENSMUSG00000087617 ENSMUST00000132465 Gm14268 lincRNA Interval_51391 chr14 27186988 27187632 + 0 NA intron (ENSMUSG00000021895.10, intron 3 of 13) protein_coding-intron (ENSMUSG00000021895.10, intron 3 of 13) -23087 ENSMUSG00000114349.1 ENSMUSG00000114349 ENSMUST00000225776 Gm7591 processed_pseudogene Interval_86494 chr19 41088558 41088893 + 0 NA exon (ENSMUSG00000025013.15, exon 19 of 21) protein_coding-exon (ENSMUSG00000025013.15, exon 19 of 21) -20602 ENSMUSG00000050121.9 ENSMUSG00000050121 ENSMUST00000087176 Opalin protein_coding Interval_157871 chr8 75108344 75110035 + 0 NA promoter-TSS (ENSMUSG00000005410.6) protein_coding-promoter-TSS (ENSMUSG00000005410.6) -435 ENSMUSG00000005410.6 ENSMUSG00000005410 ENSMUST00000211912 Mcm5 protein_coding Interval_162558 chr9 4295513 4295805 + 0 NA exon (ENSMUSG00000025894.11, exon 6 of 6) protein_coding-exon (ENSMUSG00000025894.11, exon 6 of 6) 13812 ENSMUSG00000025894.11 ENSMUSG00000025894 ENSMUST00000212897 Aasdhppt protein_coding Interval_133735 chr6 10812182 10812435 + 0 NA Intergenic Intergenic 7480 ENSMUSG00000108249.1 ENSMUSG00000108249 ENSMUST00000204249 Gm43960 processed_pseudogene Interval_83106 chr18 81381791 81382068 + 0 NA Intergenic Intergenic 75970 ENSMUSG00000118227.1 ENSMUSG00000118227 ENSMUST00000236435 Gm30288 lincRNA Interval_104590 chr3 68576419 68576809 + 0 NA intron (ENSMUSG00000027777.15, intron 1 of 6) protein_coding-intron (ENSMUSG00000027777.15, intron 2 of 7) -28906 ENSMUSG00000084617.1 ENSMUSG00000084617 ENSMUST00000122668 Gm22073 snRNA Interval_173861 chrX 106058610 106060042 + 0 NA intron (ENSMUSG00000033792.12, intron 1 of 22) protein_coding-intron (ENSMUSG00000033792.12, intron 1 of 22) 39935 ENSMUSG00000031231.4 ENSMUSG00000031231 ENSMUST00000155377 Cox7b protein_coding Interval_8958 chr1 152730075 152731750 + 0 NA promoter-TSS (ENSMUSG00000080950.1) processed_pseudogene-promoter-TSS (ENSMUSG00000080950.1) -353 ENSMUSG00000080950.1 ENSMUSG00000080950 ENSMUST00000119836 Gm7278 processed_pseudogene Interval_146479 chr7 46238083 46238769 + 0 NA promoter-TSS (ENSMUSG00000030838.20) protein_coding-promoter-TSS (ENSMUSG00000030838.20) -2577 ENSMUSG00000009487.10 ENSMUSG00000009487 ENSMUST00000209802 Otog protein_coding Interval_91484 chr2 39219628 39220361 + 0 NA intron (ENSMUSG00000026753.5, intron 1 of 5) protein_coding-intron (ENSMUSG00000026753.5, intron 1 of 6) -2700 ENSMUSG00000083157.1 ENSMUSG00000083157 ENSMUST00000121167 Gm13511 processed_pseudogene Interval_168428 chr9 80214748 80214914 + 0 NA intron (ENSMUSG00000033577.18, intron 1 of 35) protein_coding-intron (ENSMUSG00000033577.18, intron 1 of 32) 49604 ENSMUSG00000033577.18 ENSMUSG00000033577 ENSMUST00000138650 Myo6 protein_coding Interval_42884 chr13 21044090 21044958 + 0 NA Intergenic Intergenic 30423 ENSMUSG00000042869.2 ENSMUSG00000042869 ENSMUST00000058168 Olfr1370 protein_coding Interval_116348 chr4 110063067 110063273 + 0 NA Intergenic Intergenic 85117 ENSMUSG00000047143.3 ENSMUSG00000047143 ENSMUST00000061187 Dmrta2 protein_coding Interval_141056 chr6 124717018 124719952 + 0 NA promoter-TSS (ENSMUSG00000065462.3) miRNA-promoter-TSS (ENSMUSG00000065462.3) -95 ENSMUSG00000065462.3 ENSMUSG00000065462 ENSMUST00000083528 Mir200c miRNA Interval_174696 chrX 163308362 163308578 + 0 NA Intergenic Intergenic 18899 ENSMUSG00000082970.1 ENSMUSG00000082970 ENSMUST00000122155 Gm15214 processed_pseudogene Interval_29157 chr11 80808696 80810792 + 0 NA promoter-TSS (ENSMUSG00000035413.8) protein_coding-promoter-TSS (ENSMUSG00000035413.8) -431 ENSMUSG00000035413.8 ENSMUSG00000035413 ENSMUST00000040865 Tmem98 protein_coding Interval_1646 chr1 30769798 30770429 + 0 NA exon (ENSMUSG00000100261.1, exon 1 of 4) unprocessed_pseudogene-exon (ENSMUSG00000100261.1, exon 1 of 4) 426 ENSMUSG00000100261.1 ENSMUSG00000100261 ENSMUST00000188572 Gm6473 unprocessed_pseudogene Interval_95827 chr2 116974797 116977541 + 0 NA exon (ENSMUSG00000099470.1, exon 1 of 1) lincRNA-exon (ENSMUSG00000099470.1, exon 1 of 1) 259 ENSMUSG00000099470.1 ENSMUSG00000099470 ENSMUST00000188763 Gm29340 lincRNA Interval_65017 chr16 17909502 17910070 + 0 NA intron (ENSMUSG00000003527.9, intron 3 of 9) protein_coding-intron (ENSMUSG00000003527.9, intron 3 of 9) 1529 ENSMUSG00000003527.9 ENSMUSG00000003527 ENSMUST00000231921 Ess2 protein_coding Interval_173351 chrX 82901632 82902119 + 0 NA Intergenic Intergenic -4376 ENSMUSG00000088097.1 ENSMUSG00000088097 ENSMUST00000157472 Gm23671 misc_RNA Interval_123355 chr5 31667912 31668145 + 0 NA promoter-TSS (ENSMUSG00000099301.1) miRNA-promoter-TSS (ENSMUSG00000099301.1) -688 ENSMUSG00000099301.1 ENSMUSG00000099301 ENSMUST00000183932 Mir3473e miRNA Interval_54545 chr14 70599015 70600271 + 0 NA intron (ENSMUSG00000022095.9, intron 1 of 16) protein_coding-intron (ENSMUSG00000022095.9, intron 1 of 16) 192 ENSMUSG00000022095.9 ENSMUSG00000022095 ENSMUST00000022690 Fam160b2 protein_coding Interval_48715 chr13 101890204 101890568 + 0 NA Intergenic Intergenic -30034 ENSMUSG00000114717.1 ENSMUSG00000114717 ENSMUST00000224781 Gm17832 processed_pseudogene Interval_136754 chr6 59079136 59079473 + 0 NA Intergenic Intergenic -19949 ENSMUSG00000096371.1 ENSMUSG00000096371 ENSMUST00000178930 Gm22367 snoRNA Interval_78972 chr18 23417104 23417346 + 0 NA intron (ENSMUSG00000024302.16, intron 1 of 17) protein_coding-intron (ENSMUSG00000024302.16, intron 1 of 11) -79610 ENSMUSG00000024302.16 ENSMUSG00000024302 ENSMUST00000222726 Dtna protein_coding Interval_10956 chr1 177555507 177556218 + 0 NA Intergenic Intergenic 38660 ENSMUSG00000102885.1 ENSMUSG00000102885 ENSMUST00000194583 Gm37280 lincRNA Interval_46441 chr13 65285997 65287040 + 0 NA exon (ENSMUSG00000021514.18, exon 4 of 4) protein_coding-exon (ENSMUSG00000021514.18, exon 4 of 4) -2935 ENSMUSG00000114016.1 ENSMUSG00000114016 ENSMUST00000221365 Gm47258 TEC Interval_1041 chr1 14303400 14305261 + 0 NA exon (ENSMUSG00000025932.14, exon 2 of 2) protein_coding-exon (ENSMUSG00000025932.14, exon 2 of 2) 240 ENSMUSG00000025932.14 ENSMUSG00000025932 ENSMUST00000185329 Eya1 protein_coding Interval_47045 chr13 74735037 74735909 + 0 NA intron (ENSMUSG00000021585.10, intron 14 of 20) protein_coding-intron (ENSMUSG00000021585.10, intron 14 of 30) 33388 ENSMUSG00000113015.1 ENSMUSG00000113015 ENSMUST00000222599 Gm6296 processed_pseudogene Interval_7936 chr1 134646094 134647233 + 0 NA promoter-TSS (ENSMUSG00000097435.1) lincRNA-promoter-TSS (ENSMUSG00000097435.1) -18 ENSMUSG00000026452.15 ENSMUSG00000026452 ENSMUST00000187702 Syt2 protein_coding Interval_87049 chr19 45803384 45803621 + 0 NA promoter-TSS (ENSMUSG00000025221.16) protein_coding-promoter-TSS (ENSMUSG00000025221.16) 72 ENSMUSG00000025221.16 ENSMUSG00000025221 ENSMUST00000159446 Kcnip2 protein_coding Interval_137004 chr6 65932833 65933990 + 0 NA intron (ENSMUSG00000029913.14, intron 13 of 13) protein_coding-intron (ENSMUSG00000029913.14, intron 10 of 10) -19198 ENSMUSG00000036463.8 ENSMUSG00000036463 ENSMUST00000043382 4930544G11Rik protein_coding Interval_64347 chr16 10665772 10666313 + 0 NA intron (ENSMUSG00000068663.14, intron 18 of 22) protein_coding-intron (ENSMUSG00000068663.14, intron 18 of 20) 17497 ENSMUSG00000087384.1 ENSMUSG00000087384 ENSMUST00000126849 Gm15558 antisense Interval_125177 chr5 65107037 65108336 + 0 NA exon (ENSMUSG00000054920.12, exon 1 of 11) protein_coding-exon (ENSMUSG00000054920.12, exon 1 of 11) -15554 ENSMUSG00000037913.12 ENSMUSG00000037913 ENSMUST00000203117 Tmem156 protein_coding Interval_143143 chr7 3644375 3645921 + 0 NA promoter-TSS (ENSMUSG00000035632.16) protein_coding-promoter-TSS (ENSMUSG00000035632.16) -120 ENSMUSG00000035632.16 ENSMUSG00000035632 ENSMUST00000160200 Cnot3 protein_coding Interval_6063 chr1 95666986 95668256 + 0 NA promoter-TSS (ENSMUSG00000040710.10) protein_coding-promoter-TSS (ENSMUSG00000040710.10) -86 ENSMUSG00000040710.10 ENSMUSG00000040710 ENSMUST00000186853 St8sia4 protein_coding Interval_70960 chr17 16845826 16846076 + 0 NA Intergenic Intergenic -1444 ENSMUSG00000116958.1 ENSMUSG00000116958 ENSMUST00000231260 Gm6705 processed_pseudogene Interval_105312 chr3 84813848 84815649 + 0 NA promoter-TSS (ENSMUSG00000028086.15) protein_coding-promoter-TSS (ENSMUSG00000028086.15) -1018 ENSMUSG00000028086.15 ENSMUSG00000028086 ENSMUST00000029727 Fbxw7 protein_coding Interval_75651 chr17 69921438 69921739 + 0 NA intron (ENSMUSG00000117233.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000117233.1, intron 1 of 2) 2407 ENSMUSG00000117233.1 ENSMUSG00000117233 ENSMUST00000232745 Gm36594 lincRNA Interval_66515 chr16 34675581 34675957 + 0 NA intron (ENSMUSG00000022832.11, intron 3 of 4) protein_coding-intron (ENSMUSG00000022832.11, intron 4 of 5) 9452 ENSMUSG00000022832.11 ENSMUSG00000022832 ENSMUST00000231612 Ropn1 protein_coding Interval_68734 chr16 85172143 85174115 + 0 NA intron (ENSMUSG00000022892.11, intron 1 of 13) protein_coding-intron (ENSMUSG00000022892.11, intron 1 of 15) 4280 ENSMUSG00000098604.1 ENSMUSG00000098604 ENSMUST00000184264 Gm27295 snoRNA Interval_89930 chr2 26563174 26563451 + 0 NA Intergenic Intergenic 4687 ENSMUSG00000082864.1 ENSMUSG00000082864 ENSMUST00000121427 Gm13358 processed_pseudogene Interval_107 GL456233.1 195118 195596 + 0 NA NA NA NA NA Interval_53423 chr14 57338580 57339537 + 0 NA intron (ENSMUSG00000021947.11, intron 2 of 3) protein_coding-intron (ENSMUSG00000021947.11, intron 3 of 7) -5573 ENSMUSG00000077497.1 ENSMUSG00000077497 ENSMUST00000104309 Gm23593 snoRNA Interval_44163 chr13 41348718 41350057 + 0 NA intron (ENSMUSG00000021365.15, intron 2 of 2) protein_coding-intron (ENSMUSG00000021365.15, intron 2 of 7) -10584 ENSMUSG00000097373.1 ENSMUSG00000097373 ENSMUST00000180728 Gm26877 antisense Interval_26015 chr11 53489171 53489585 + 0 NA Intergenic Intergenic -9104 ENSMUSG00000044352.6 ENSMUSG00000044352 ENSMUST00000104955 Sowaha protein_coding Interval_104959 chr3 79278254 79278540 + 0 NA intron (ENSMUSG00000062232.14, intron 1 of 29) protein_coding-intron (ENSMUSG00000062232.14, intron 1 of 29) 8120 ENSMUSG00000062232.14 ENSMUSG00000062232 ENSMUST00000136126 Rapgef2 protein_coding Interval_168970 chr9 89854863 89855315 + 0 NA intron (ENSMUSG00000098627.7, intron 3 of 5) lincRNA-intron (ENSMUSG00000098627.7, intron 3 of 5) 28107 ENSMUSG00000098627.7 ENSMUSG00000098627 ENSMUST00000184759 4930524O08Rik lincRNA Interval_48353 chr13 98437109 98438194 + 0 NA Intergenic Intergenic -2586 ENSMUSG00000099446.1 ENSMUSG00000099446 ENSMUST00000186644 2310005E17Rik lincRNA Interval_50229 chr14 10684710 10685310 + 0 NA intron (ENSMUSG00000060579.13, intron 3 of 4) protein_coding-intron (ENSMUSG00000060579.13, intron 4 of 9) -53525 ENSMUSG00000089833.2 ENSMUSG00000089833 ENSMUST00000160149 Fhitos antisense Interval_168495 chr9 82540246 82541139 + 0 NA Intergenic Intergenic 15701 ENSMUSG00000098420.1 ENSMUSG00000098420 ENSMUST00000185049 Gm27249 processed_pseudogene Interval_117799 chr4 126286225 126287175 + 0 NA promoter-TSS (ENSMUSG00000056174.8) protein_coding-promoter-TSS (ENSMUSG00000056174.8) -13830 ENSMUSG00000056174.8 ENSMUSG00000056174 ENSMUST00000128435 Col8a2 protein_coding Interval_87642 chr19 53943770 53945715 + 0 NA promoter-TSS (ENSMUSG00000024976.14) protein_coding-promoter-TSS (ENSMUSG00000024976.14) -511 ENSMUSG00000084957.3 ENSMUSG00000084957 ENSMUST00000236900 Bbip1 protein_coding Interval_137348 chr6 71585935 71586942 + 0 NA Intergenic Intergenic -42324 ENSMUSG00000107406.1 ENSMUSG00000107406 ENSMUST00000205011 1700040L08Rik antisense Interval_116905 chr4 118122601 118124068 + 0 NA intron (ENSMUSG00000028538.12, intron 1 of 11) protein_coding-intron (ENSMUSG00000028538.12, intron 1 of 11) 38323 ENSMUSG00000033326.15 ENSMUSG00000033326 ENSMUST00000164821 Kdm4a protein_coding Interval_133504 chr6 5968778 5968997 + 0 NA intron (ENSMUSG00000029757.16, intron 12 of 16) protein_coding-intron (ENSMUSG00000029757.16, intron 11 of 15) 8506 ENSMUSG00000085416.1 ENSMUSG00000085416 ENSMUST00000130004 1700019G24Rik antisense Interval_119597 chr4 138613214 138613705 + 0 NA intron (ENSMUSG00000028753.12, intron 1 of 14) protein_coding-intron (ENSMUSG00000028753.12, intron 1 of 21) -6929 ENSMUSG00000028753.12 ENSMUSG00000028753 ENSMUST00000133319 Vwa5b1 protein_coding Interval_59035 chr15 41913129 41914128 + 0 NA Intergenic Intergenic -8448 ENSMUSG00000116083.1 ENSMUSG00000116083 ENSMUST00000229137 Gm5469 processed_pseudogene Interval_96378 chr2 122056213 122057091 + 0 NA TTS (ENSMUSG00000027236.8) protein_coding-TTS (ENSMUSG00000027236.8) 28000 ENSMUSG00000027236.8 ENSMUSG00000027236 ENSMUST00000142747 Eif3j1 protein_coding Interval_133530 chr6 6175567 6176007 + 0 NA intron (ENSMUSG00000015112.15, intron 3 of 17) protein_coding-intron (ENSMUSG00000015112.15, intron 3 of 17) -1836 ENSMUSG00000015112.15 ENSMUSG00000015112 ENSMUST00000177698 Slc25a13 protein_coding Interval_51137 chr14 24067584 24068934 + 0 NA intron (ENSMUSG00000114722.1, intron 1 of 3) lincRNA-intron (ENSMUSG00000114722.1, intron 1 of 3) -1475 ENSMUSG00000090381.2 ENSMUSG00000090381 ENSMUST00000109467 Gm6158 processed_pseudogene Interval_100218 chr2 167724066 167724322 + 0 NA intron (ENSMUSG00000006462.6, intron 2 of 3) lincRNA-intron (ENSMUSG00000006462.6, intron 2 of 3) 33017 ENSMUSG00000006462.6 ENSMUSG00000006462 ENSMUST00000130679 A530013C23Rik lincRNA Interval_112148 chr4 34943657 34943982 + 0 NA Intergenic Intergenic -2470 ENSMUSG00000082709.1 ENSMUSG00000082709 ENSMUST00000121986 Gm12362 processed_pseudogene Interval_150815 chr7 114921585 114922744 + 0 NA Intergenic Intergenic 5562 ENSMUSG00000046411.2 ENSMUSG00000046411 ENSMUST00000059737 Rps4l-ps processed_pseudogene Interval_136965 chr6 65124710 65124908 + 0 NA intron (ENSMUSG00000029919.5, intron 4 of 5) protein_coding-intron (ENSMUSG00000029919.5, intron 4 of 5) -1882 ENSMUSG00000029919.5 ENSMUSG00000029919 ENSMUST00000170252 Hpgds protein_coding Interval_157611 chr8 71700055 71702227 + 0 NA intron (ENSMUSG00000031803.8, intron 1 of 2) protein_coding-intron (ENSMUSG00000031803.8, intron 1 of 2) 648 ENSMUSG00000031803.8 ENSMUSG00000031803 ENSMUST00000034260 B3gnt3 protein_coding Interval_57087 chr15 5991426 5992716 + 0 NA Intergenic Intergenic 40627 ENSMUSG00000115342.1 ENSMUSG00000115342 ENSMUST00000226154 Gm49095 processed_pseudogene Interval_112805 chr4 45121213 45121569 + 0 NA Intergenic Intergenic -13277 ENSMUSG00000078713.8 ENSMUSG00000078713 ENSMUST00000107807 Tomm5 protein_coding Interval_18761 chr10 90132953 90134099 + 0 NA exon (ENSMUSG00000112140.1, exon 1 of 1) processed_pseudogene-exon (ENSMUSG00000112140.1, exon 1 of 1) 1291 ENSMUSG00000112140.1 ENSMUSG00000112140 ENSMUST00000217774 Gm5780 processed_pseudogene Interval_101010 chr2 174242750 174243773 + 0 NA Intergenic Intergenic -4667 ENSMUSG00000098467.1 ENSMUSG00000098467 ENSMUST00000184218 Gm27591 miRNA Interval_3668 chr1 60544839 60545101 + 0 NA intron (ENSMUSG00000026014.15, intron 1 of 3) protein_coding-intron (ENSMUSG00000026014.15, intron 1 of 15) 7950 ENSMUSG00000084400.1 ENSMUSG00000084400 ENSMUST00000117433 Gm11576 processed_pseudogene Interval_31305 chr11 99492785 99494101 + 0 NA promoter-TSS (ENSMUSG00000006777.7) protein_coding-promoter-TSS (ENSMUSG00000006777.7) -306 ENSMUSG00000006777.7 ENSMUSG00000006777 ENSMUST00000006969 Krt23 protein_coding Interval_137525 chr6 72880414 72882086 + 0 NA intron (ENSMUSG00000055239.10, intron 1 of 3) protein_coding-intron (ENSMUSG00000055239.10, intron 1 of 6) 14669 ENSMUSG00000107610.1 ENSMUSG00000107610 ENSMUST00000205107 D530018E20Rik TEC Interval_5236 chr1 86628366 86628987 + 0 NA Intergenic Intergenic 8932 ENSMUSG00000084468.1 ENSMUSG00000084468 ENSMUST00000122519 Gm22955 miRNA Interval_157030 chr8 64631367 64632890 + 0 NA intron (ENSMUSG00000037852.8, intron 1 of 8) protein_coding-intron (ENSMUSG00000037852.8, intron 1 of 8) -10131 ENSMUSG00000037852.8 ENSMUSG00000037852 ENSMUST00000211312 Cpe protein_coding Interval_164599 chr9 39905064 39905331 + 0 NA Intergenic Intergenic -2139 ENSMUSG00000095390.2 ENSMUSG00000095390 ENSMUST00000076802 Olfr229 protein_coding Interval_74981 chr17 58918803 58919615 + 0 NA intron (ENSMUSG00000024227.14, intron 8 of 12) protein_coding-intron (ENSMUSG00000024227.14, intron 8 of 12) -25714 ENSMUSG00000024227.14 ENSMUSG00000024227 ENSMUST00000177360 Pdzph1 protein_coding Interval_121062 chr4 152524623 152524820 + 0 NA intron (ENSMUSG00000039577.17, intron 10 of 28) protein_coding-intron (ENSMUSG00000039577.17, intron 10 of 28) 46543 ENSMUSG00000039577.17 ENSMUSG00000039577 ENSMUST00000123635 Nphp4 protein_coding Interval_148279 chr7 80255557 80257360 + 0 NA intron (ENSMUSG00000045467.13, intron 9 of 13) protein_coding-intron (ENSMUSG00000045467.13, intron 10 of 14) -4762 ENSMUSG00000047084.8 ENSMUSG00000047084 ENSMUST00000138005 Ngrn protein_coding Interval_35007 chr12 16610327 16610859 + 0 NA intron (ENSMUSG00000020593.16, intron 2 of 21) protein_coding-intron (ENSMUSG00000020593.16, intron 1 of 20) 373 ENSMUSG00000020593.16 ENSMUSG00000020593 ENSMUST00000221146 Lpin1 protein_coding Interval_146338 chr7 45403512 45403933 + 0 NA Intergenic Intergenic -1931 ENSMUSG00000038201.10 ENSMUSG00000038201 ENSMUST00000107774 Kcna7 protein_coding Interval_4725 chr1 77754424 77754855 + 0 NA Intergenic Intergenic 143807 ENSMUSG00000065215.1 ENSMUSG00000065215 ENSMUST00000083281 Gm26263 snRNA Interval_102980 chr3 33969689 33970439 + 0 NA Intergenic Intergenic -10864 ENSMUSG00000077559.1 ENSMUSG00000077559 ENSMUST00000104371 Gm23175 snoRNA Interval_92207 chr2 56440820 56441198 + 0 NA Intergenic Intergenic -344802 ENSMUSG00000098437.1 ENSMUSG00000098437 ENSMUST00000184814 Mir195b miRNA Interval_54940 chr14 76367807 76368302 + 0 NA Intergenic Intergenic -50774 ENSMUSG00000022010.19 ENSMUSG00000022010 ENSMUST00000133224 Tsc22d1 protein_coding Interval_159161 chr8 91261406 91261856 + 0 NA intron (ENSMUSG00000033282.14, intron 16 of 25) protein_coding-intron (ENSMUSG00000033282.14, intron 16 of 25) -1096 ENSMUSG00000109828.1 ENSMUSG00000109828 ENSMUST00000210054 Gm45662 TEC Interval_155011 chr8 25675205 25675862 + 0 NA TTS (ENSMUSG00000054823.16) protein_coding-TTS (ENSMUSG00000054823.16) -3417 ENSMUSG00000088176.1 ENSMUSG00000088176 ENSMUST00000157551 Gm23094 misc_RNA Interval_91683 chr2 47492022 47492240 + 0 NA Intergenic Intergenic -49853 ENSMUSG00000092853.1 ENSMUSG00000092853 ENSMUST00000175112 Gm25959 miRNA Interval_98588 chr2 153420257 153422600 + 0 NA intron (ENSMUSG00000061411.12, intron 2 of 4) protein_coding-intron (ENSMUSG00000061411.12, intron 5 of 10) 7579 ENSMUSG00000082283.1 ENSMUSG00000082283 ENSMUST00000119815 Gm14472 processed_pseudogene Interval_81202 chr18 56381169 56381401 + 0 NA Intergenic Intergenic -8858 ENSMUSG00000117688.1 ENSMUSG00000117688 ENSMUST00000235993 Gm8629 processed_pseudogene Interval_44592 chr13 46561773 46561994 + 0 NA intron (ENSMUSG00000021373.16, intron 4 of 9) protein_coding-intron (ENSMUSG00000021373.16, intron 4 of 12) 43199 ENSMUSG00000087913.1 ENSMUSG00000087913 ENSMUST00000157288 Gm24915 rRNA Interval_43797 chr13 36564566 36565503 + 0 NA intron (ENSMUSG00000021420.13, intron 6 of 7) protein_coding-intron (ENSMUSG00000021420.13, intron 6 of 7) -5969 ENSMUSG00000114581.1 ENSMUSG00000114581 ENSMUST00000223824 Gm8277 processed_pseudogene Interval_86847 chr19 44328018 44328739 + 0 NA Intergenic Intergenic -4714 ENSMUSG00000050195.8 ENSMUSG00000050195 ENSMUST00000058856 Scd4 protein_coding Interval_5946 chr1 93413814 93414472 + 0 NA intron (ENSMUSG00000034088.15, intron 18 of 24) protein_coding-intron (ENSMUSG00000034088.15, intron 21 of 27) -7557 ENSMUSG00000090489.3 ENSMUSG00000090489 ENSMUST00000096427 Gm17415 processed_pseudogene Interval_155519 chr8 34075878 34076495 + 0 NA Intergenic Intergenic 18852 ENSMUSG00000031516.11 ENSMUSG00000031516 ENSMUST00000143411 Dctn6 protein_coding Interval_39888 chr12 99367772 99369423 + 0 NA exon (ENSMUSG00000113003.1, exon 1 of 1) TEC-exon (ENSMUSG00000113003.1, exon 1 of 1) 1316 ENSMUSG00000113003.1 ENSMUSG00000113003 ENSMUST00000223213 Gm47138 TEC Interval_5743 chr1 91388445 91388926 + 0 NA exon (ENSMUSG00000026309.14, exon 1 of 3) protein_coding-exon (ENSMUSG00000026309.14, exon 1 of 3) 10130 ENSMUSG00000026309.14 ENSMUSG00000026309 ENSMUST00000189651 Ilkap protein_coding Interval_24602 chr11 35091471 35092020 + 0 NA Intergenic Intergenic -79884 ENSMUSG00000056427.10 ENSMUSG00000056427 ENSMUST00000124438 Slit3 protein_coding Interval_41272 chr12 112314407 112315405 + 0 NA Intergenic Intergenic 35161 ENSMUSG00000103080.1 ENSMUSG00000103080 ENSMUST00000194990 Gm38123 TEC Interval_129614 chr5 121340733 121341813 + 0 NA intron (ENSMUSG00000042744.16, intron 55 of 75) protein_coding-intron (ENSMUSG00000042744.16, intron 55 of 75) -15571 ENSMUSG00000077347.1 ENSMUSG00000077347 ENSMUST00000104159 Gm24671 snRNA Interval_62995 chr15 98546785 98547144 + 0 NA promoter-TSS (ENSMUSG00000011960.12) protein_coding-promoter-TSS (ENSMUSG00000011960.12) 7721 ENSMUSG00000011960.12 ENSMUSG00000011960 ENSMUST00000130921 Ccnt1 protein_coding Interval_94023 chr2 80775324 80775575 + 0 NA Intergenic Intergenic -61692 ENSMUSG00000064193.8 ENSMUSG00000064193 ENSMUST00000138679 Gm4735 processed_pseudogene Interval_101242 chr2 179780212 179780461 + 0 NA TTS (ENSMUSG00000000305.12) protein_coding-TTS (ENSMUSG00000000305.12) 3173 ENSMUSG00000000305.12 ENSMUSG00000000305 ENSMUST00000098996 Cdh4 protein_coding Interval_103554 chr3 49080019 49081145 + 0 NA intron (ENSMUSG00000102263.1, intron 2 of 2) lincRNA-intron (ENSMUSG00000102263.1, intron 2 of 2) 18204 ENSMUSG00000102263.1 ENSMUSG00000102263 ENSMUST00000194963 Gm31415 lincRNA Interval_32950 chr11 113326079 113327048 + 0 NA intron (ENSMUSG00000041654.15, intron 6 of 9) protein_coding-intron (ENSMUSG00000041654.15, intron 7 of 10) -116894 ENSMUSG00000085421.1 ENSMUSG00000085421 ENSMUST00000130373 4732490B19Rik lincRNA Interval_164247 chr9 34279478 34280633 + 0 NA Intergenic Intergenic 79827 ENSMUSG00000098909.1 ENSMUSG00000098909 ENSMUST00000183960 Gm27161 processed_pseudogene Interval_130087 chr5 124180497 124181000 + 0 NA intron (ENSMUSG00000029406.15, intron 2 of 24) protein_coding-intron (ENSMUSG00000029406.15, intron 1 of 23) -14894 ENSMUSG00000089842.2 ENSMUSG00000089842 ENSMUST00000198466 Pitpnm2os2 antisense Interval_32026 chr11 104537282 104537521 + 0 NA intron (ENSMUSG00000020687.13, intron 1 of 3) protein_coding-intron (ENSMUSG00000020687.13, intron 1 of 18) 13219 ENSMUSG00000020687.13 ENSMUSG00000020687 ENSMUST00000135303 Cdc27 protein_coding Interval_146207 chr7 44693807 44694295 + 0 NA Intergenic Intergenic -14691 ENSMUSG00000066500.5 ENSMUSG00000066500 ENSMUST00000207182 Izumo2 protein_coding Interval_74751 chr17 56315335 56315532 + 0 NA exon (ENSMUSG00000001228.14, exon 9 of 17) protein_coding-exon (ENSMUSG00000001228.14, exon 9 of 17) 11026 ENSMUSG00000001228.14 ENSMUSG00000001228 ENSMUST00000139654 Uhrf1 protein_coding Interval_35174 chr12 17778506 17779810 + 0 NA intron (ENSMUSG00000071379.2, intron 2 of 4) protein_coding-intron (ENSMUSG00000071379.2, intron 1 of 3) 50932 ENSMUSG00000071379.2 ENSMUSG00000071379 ENSMUST00000222944 Hpcal1 protein_coding Interval_134230 chr6 23272877 23273558 + 0 NA intron (ENSMUSG00000017978.18, intron 28 of 29) protein_coding-intron (ENSMUSG00000017978.18, intron 28 of 29) 22084 ENSMUSG00000106775.1 ENSMUSG00000106775 ENSMUST00000202489 C130093G08Rik TEC Interval_25893 chr11 52369445 52371244 + 0 NA intron (ENSMUSG00000020402.11, intron 1 of 9) protein_coding-intron (ENSMUSG00000020402.11, intron 1 of 8) -3756 ENSMUSG00000020402.11 ENSMUSG00000020402 ENSMUST00000153339 Vdac1 protein_coding Interval_81024 chr18 53058775 53059173 + 0 NA Intergenic Intergenic 106425 ENSMUSG00000118195.1 ENSMUSG00000118195 ENSMUST00000235787 Gm8572 processed_pseudogene Interval_36086 chr12 35441358 35441609 + 0 NA TTS (ENSMUSG00000065195.1) snRNA-TTS (ENSMUSG00000065195.1) 293 ENSMUSG00000065195.1 ENSMUSG00000065195 ENSMUST00000083261 Gm26071 snRNA Interval_28151 chr11 73256697 73257899 + 0 NA intron (ENSMUSG00000005952.15, intron 9 of 9) protein_coding-intron (ENSMUSG00000005952.15, intron 13 of 13) -10090 ENSMUSG00000043029.2 ENSMUSG00000043029 ENSMUST00000049676 Trpv3 protein_coding Interval_78840 chr18 20922115 20923659 + 0 NA Intergenic Intergenic -26794 ENSMUSG00000033382.15 ENSMUSG00000033382 ENSMUST00000224530 Trappc8 protein_coding Interval_10988 chr1 177774736 177774934 + 0 NA exon (ENSMUSG00000015961.8, exon 7 of 7) protein_coding-exon (ENSMUSG00000015961.8, exon 7 of 7) -12021 ENSMUSG00000089657.1 ENSMUSG00000089657 ENSMUST00000161442 Gm16585 processed_pseudogene Interval_119058 chr4 135259630 135259842 + 0 NA intron (ENSMUSG00000037242.8, intron 1 of 2) protein_coding-intron (ENSMUSG00000037242.8, intron 1 of 5) 13078 ENSMUSG00000037242.8 ENSMUSG00000037242 ENSMUST00000143370 Clic4 protein_coding Interval_72221 chr17 28658357 28658786 + 0 NA intron (ENSMUSG00000036196.16, intron 4 of 5) protein_coding-intron (ENSMUSG00000036196.16, intron 8 of 19) 31218 ENSMUSG00000036196.16 ENSMUSG00000036196 ENSMUST00000233213 Slc26a8 protein_coding Interval_130444 chr5 127674209 127674567 + 0 NA intron (ENSMUSG00000049971.17, intron 7 of 10) protein_coding-intron (ENSMUSG00000049971.17, intron 6 of 11) 42126 ENSMUSG00000049971.17 ENSMUSG00000049971 ENSMUST00000134529 Glt1d1 protein_coding Interval_55832 chr14 101235133 101235346 + 0 NA Intergenic Intergenic -34909 ENSMUSG00000042888.10 ENSMUSG00000042888 ENSMUST00000187304 Prr30 protein_coding Interval_147311 chr7 65732038 65732682 + 0 NA Intergenic Intergenic 38884 ENSMUSG00000078681.10 ENSMUSG00000078681 ENSMUST00000206361 Tm2d3 protein_coding Interval_27606 chr11 69012035 69012610 + 0 NA Intergenic Intergenic 16320 ENSMUSG00000084522.1 ENSMUSG00000084522 ENSMUST00000122573 Gm25819 snRNA Interval_141803 chr6 134614893 134615735 + 0 NA intron (ENSMUSG00000032718.4, intron 3 of 3) protein_coding-intron (ENSMUSG00000032718.4, intron 3 of 3) -7633 ENSMUSG00000107728.1 ENSMUSG00000107728 ENSMUST00000204630 Gm38910 lincRNA Interval_112159 chr4 35028168 35028573 + 0 NA intron (ENSMUSG00000073910.10, intron 2 of 3) protein_coding-intron (ENSMUSG00000073910.10, intron 2 of 3) 66150 ENSMUSG00000086792.1 ENSMUSG00000086792 ENSMUST00000144419 Gm12364 antisense Interval_37410 chr12 67654436 67655190 + 0 NA intron (ENSMUSG00000114010.1, intron 2 of 3) lincRNA-intron (ENSMUSG00000114010.1, intron 2 of 3) 3428 ENSMUSG00000114010.1 ENSMUSG00000114010 ENSMUST00000222891 Gm47432 lincRNA Interval_20918 chr10 122006226 122007329 + 0 NA intron (ENSMUSG00000020121.15, intron 1 of 3) protein_coding-intron (ENSMUSG00000020121.15, intron 1 of 21) 40538 ENSMUSG00000020121.15 ENSMUSG00000020121 ENSMUST00000162710 Srgap1 protein_coding Interval_84011 chr19 6099386 6100416 + 0 NA Intergenic Intergenic 4064 ENSMUSG00000117666.1 ENSMUSG00000117666 ENSMUST00000237778 Gm550 protein_coding Interval_4752 chr1 78328878 78329050 + 0 NA intron (ENSMUSG00000099561.1, intron 1 of 3) protein_coding-intron (ENSMUSG00000032908.9, intron 1 of 4) 11142 ENSMUSG00000099561.1 ENSMUSG00000099561 ENSMUST00000188113 Gm28410 antisense Interval_121798 chr5 8366916 8368566 + 0 NA intron (ENSMUSG00000040537.17, intron 1 of 1) protein_coding-intron (ENSMUSG00000040537.17, intron 1 of 28) -38346 ENSMUSG00000106265.1 ENSMUSG00000106265 ENSMUST00000198595 Gm42490 TEC Interval_98629 chr2 153651589 153652423 + 0 NA intron (ENSMUSG00000027478.15, intron 2 of 23) protein_coding-intron (ENSMUSG00000027478.15, intron 2 of 23) -1720 ENSMUSG00000079000.3 ENSMUSG00000079000 ENSMUST00000124988 Dnmt3bos antisense Interval_44221 chr13 42345582 42347252 + 0 NA Intergenic Intergenic -41426 ENSMUSG00000113619.1 ENSMUSG00000113619 ENSMUST00000221433 Gm47118 antisense Interval_106484 chr3 96639290 96639799 + 0 NA intron (ENSMUSG00000028102.15, intron 3 of 3) protein_coding-intron (ENSMUSG00000028102.15, intron 3 of 4) 3711 ENSMUSG00000028102.15 ENSMUSG00000028102 ENSMUST00000147821 Pex11b protein_coding Interval_79867 chr18 35642891 35643065 + 0 NA Intergenic Intergenic 5391 ENSMUSG00000024353.5 ENSMUSG00000024353 ENSMUST00000237462 Mzb1 protein_coding Interval_37681 chr12 71052591 71054039 + 0 NA intron (ENSMUSG00000048118.17, intron 1 of 9) protein_coding-intron (ENSMUSG00000048118.17, intron 11 of 23) 4974 ENSMUSG00000048118.17 ENSMUSG00000048118 ENSMUST00000135709 Arid4a protein_coding Interval_29120 chr11 80450051 80451696 + 0 NA intron (ENSMUSG00000017428.16, intron 4 of 8) protein_coding-intron (ENSMUSG00000017428.16, intron 5 of 13) 22187 ENSMUSG00000017428.16 ENSMUSG00000017428 ENSMUST00000125591 Psmd11 protein_coding Interval_59555 chr15 55256510 55256761 + 0 NA exon (ENSMUSG00000022419.16, exon 9 of 9) protein_coding-exon (ENSMUSG00000022419.16, exon 9 of 9) 5968 ENSMUSG00000095792.1 ENSMUSG00000095792 ENSMUST00000179457 Gm26296 snRNA Interval_132164 chr5 143037116 143037674 + 0 NA intron (ENSMUSG00000045078.12, intron 13 of 16) protein_coding-intron (ENSMUSG00000045078.12, intron 13 of 16) 12648 ENSMUSG00000106543.1 ENSMUSG00000106543 ENSMUST00000199336 Gm43378 sense_intronic Interval_68941 chr16 89524610 89524886 + 0 NA Intergenic Intergenic -16425 ENSMUSG00000056706.3 ENSMUSG00000056706 ENSMUST00000056118 Krtap7-1 protein_coding Interval_5788 chr1 91818909 91819855 + 0 NA intron (ENSMUSG00000007805.4, intron 1 of 1) protein_coding-intron (ENSMUSG00000007805.4, intron 1 of 1) -3133 ENSMUSG00000101414.1 ENSMUSG00000101414 ENSMUST00000188329 Gm29101 sense_intronic Interval_46141 chr13 61978698 61981092 + 0 NA Intergenic Intergenic -26773 ENSMUSG00000113014.1 ENSMUSG00000113014 ENSMUST00000221926 Selenok-ps8 processed_pseudogene Interval_76057 chr17 74623127 74623780 + 0 NA intron (ENSMUSG00000024073.16, intron 35 of 72) protein_coding-intron (ENSMUSG00000024073.16, intron 35 of 72) -6334 ENSMUSG00000097546.1 ENSMUSG00000097546 ENSMUST00000181387 Gm26749 antisense Interval_89361 chr2 19790171 19790966 + 0 NA Intergenic Intergenic -98085 ENSMUSG00000105927.1 ENSMUSG00000105927 ENSMUST00000198109 Gm44457 miRNA Interval_20312 chr10 116807975 116809163 + 0 NA intron (ENSMUSG00000034057.8, intron 13 of 24) protein_coding-intron (ENSMUSG00000034057.8, intron 13 of 24) 79316 ENSMUSG00000112924.1 ENSMUSG00000112924 ENSMUST00000218193 4930579P08Rik lincRNA Interval_83596 chr18 90437820 90438341 + 0 NA Intergenic Intergenic 45380 ENSMUSG00000117805.1 ENSMUSG00000117805 ENSMUST00000237124 Gm18280 lincRNA Interval_170582 chr9 109005533 109006108 + 0 NA intron (ENSMUSG00000025648.18, intron 3 of 6) protein_coding-intron (ENSMUSG00000025648.18, intron 4 of 13) 6932 ENSMUSG00000025648.18 ENSMUSG00000025648 ENSMUST00000198763 Pfkfb4 protein_coding Interval_3718 chr1 61713120 61713507 + 0 NA intron (ENSMUSG00000052062.14, intron 1 of 9) protein_coding-intron (ENSMUSG00000052062.14, intron 1 of 21) 10786 ENSMUSG00000104081.1 ENSMUSG00000104081 ENSMUST00000194715 Gm38278 TEC Interval_114870 chr4 86588201 86588691 + 0 NA intron (ENSMUSG00000038047.18, intron 12 of 14) protein_coding-intron (ENSMUSG00000038047.18, intron 12 of 16) -1863 ENSMUSG00000088958.1 ENSMUSG00000088958 ENSMUST00000158333 Scarna8 scaRNA Interval_119983 chr4 141227990 141230257 + 0 NA Intergenic Intergenic 10330 ENSMUSG00000103366.1 ENSMUSG00000103366 ENSMUST00000195673 C630004L07Rik TEC Interval_89043 chr2 14981117 14981385 + 0 NA promoter-TSS (ENSMUSG00000057914.15) protein_coding-promoter-TSS (ENSMUSG00000057914.15) 15053 ENSMUSG00000104271.1 ENSMUSG00000104271 ENSMUST00000195585 Gm37891 TEC Interval_73710 chr17 42910467 42910703 + 0 NA Intergenic Intergenic -79555 ENSMUSG00000061665.7 ENSMUSG00000061665 ENSMUST00000233626 Cd2ap protein_coding Interval_119208 chr4 136205953 136207325 + 0 NA exon (ENSMUSG00000036995.7, exon 1 of 25) protein_coding-exon (ENSMUSG00000036995.7, exon 1 of 25) 274 ENSMUSG00000036995.7 ENSMUSG00000036995 ENSMUST00000047526 Asap3 protein_coding Interval_126187 chr5 81666802 81667042 + 0 NA intron (ENSMUSG00000037605.16, intron 12 of 12) protein_coding-intron (ENSMUSG00000037605.16, intron 11 of 24) -69005 ENSMUSG00000106611.1 ENSMUSG00000106611 ENSMUST00000104721 Gm22048 miRNA Interval_109120 chr3 135928001 135929351 + 0 NA intron (ENSMUSG00000104710.1, intron 1 of 3) antisense-intron (ENSMUSG00000104710.1, intron 3 of 3) 444 ENSMUSG00000104710.1 ENSMUSG00000104710 ENSMUST00000198354 Gm31243 antisense Interval_120619 chr4 149723944 149724709 + 0 NA TTS (ENSMUSG00000044700.15) protein_coding-TTS (ENSMUSG00000044700.15) 13444 ENSMUSG00000044700.15 ENSMUSG00000044700 ENSMUST00000145405 Tmem201 protein_coding Interval_77838 chr18 4352665 4353975 + 0 NA promoter-TSS (ENSMUSG00000024235.11) protein_coding-promoter-TSS (ENSMUSG00000024235.11) -238 ENSMUSG00000117401.1 ENSMUSG00000117401 ENSMUST00000234768 4833419F23Rik lincRNA Interval_36546 chr12 49344213 49344533 + 0 NA Intergenic Intergenic 20430 ENSMUSG00000112651.1 ENSMUSG00000112651 ENSMUST00000219860 Gm18623 processed_pseudogene Interval_49493 chr13 112424105 112424631 + 0 NA exon (ENSMUSG00000114869.1, exon 2 of 2) lincRNA-exon (ENSMUSG00000114869.1, exon 2 of 2) 1972 ENSMUSG00000114869.1 ENSMUSG00000114869 ENSMUST00000224307 Gm48876 lincRNA Interval_8661 chr1 146495330 146495528 + 0 NA promoter-TSS (ENSMUSG00000099964.6) antisense-promoter-TSS (ENSMUSG00000099964.6) -478 ENSMUSG00000099964.6 ENSMUSG00000099964 ENSMUST00000185686 Gm29514 antisense Interval_61431 chr15 81568726 81569089 + 0 NA Intergenic Intergenic 16121 ENSMUSG00000103520.1 ENSMUSG00000103520 ENSMUST00000192082 1110025M09Rik TEC Interval_99037 chr2 156795500 156795787 + 0 NA Intergenic Intergenic -5240 ENSMUSG00000082196.3 ENSMUSG00000082196 ENSMUST00000120090 Gm14231 processed_pseudogene Interval_66330 chr16 33193773 33194010 + 0 NA intron (ENSMUSG00000022807.9, intron 1 of 12) protein_coding-intron (ENSMUSG00000022807.9, intron 1 of 12) 8820 ENSMUSG00000022807.9 ENSMUSG00000022807 ENSMUST00000231617 Osbpl11 protein_coding Interval_23356 chr11 21738078 21738921 + 0 NA intron (ENSMUSG00000020319.9, intron 3 of 3) protein_coding-intron (ENSMUSG00000020319.9, intron 12 of 17) 43370 ENSMUSG00000020319.9 ENSMUSG00000020319 ENSMUST00000128794 Wdpcp protein_coding Interval_141695 chr6 133615266 133616220 + 0 NA Intergenic Intergenic 3454 ENSMUSG00000107565.1 ENSMUSG00000107565 ENSMUST00000203622 Gm34314 unprocessed_pseudogene Interval_89318 chr2 19286265 19286445 + 0 NA intron (ENSMUSG00000037683.14, intron 11 of 19) protein_coding-intron (ENSMUSG00000037683.14, intron 11 of 18) -58483 ENSMUSG00000087674.7 ENSMUSG00000087674 ENSMUST00000136456 4930447M23Rik lincRNA Interval_28763 chr11 78163729 78166895 + 0 NA TTS (ENSMUSG00000017405.14) protein_coding-TTS (ENSMUSG00000017405.14) 277 ENSMUSG00000017386.10 ENSMUSG00000017386 ENSMUST00000148218 Traf4 protein_coding Interval_142257 chr6 140107948 140108397 + 0 NA Intergenic Intergenic -23895 ENSMUSG00000107407.1 ENSMUSG00000107407 ENSMUST00000204065 Gm44159 processed_pseudogene Interval_148179 chr7 79670244 79670444 + 0 NA promoter-TSS (ENSMUSG00000046591.10) protein_coding-promoter-TSS (ENSMUSG00000046591.10) -577 ENSMUSG00000046591.10 ENSMUSG00000046591 ENSMUST00000206677 Ticrr protein_coding Interval_26894 chr11 61352049 61352541 + 0 NA intron (ENSMUSG00000010122.14, intron 15 of 17) protein_coding-intron (ENSMUSG00000010122.14, intron 14 of 16) -9711 ENSMUSG00000069855.9 ENSMUSG00000069855 ENSMUST00000147450 Slc47a2 protein_coding Interval_16469 chr10 63038779 63040227 + 0 NA intron (ENSMUSG00000020072.15, intron 2 of 4) protein_coding-intron (ENSMUSG00000020072.15, intron 2 of 9) -14707 ENSMUSG00000020072.15 ENSMUSG00000020072 ENSMUST00000130531 Pbld2 protein_coding Interval_99988 chr2 166257779 166259306 + 0 NA Intergenic Intergenic -15366 ENSMUSG00000084840.1 ENSMUSG00000084840 ENSMUST00000152987 Gm11468 lincRNA Interval_19264 chr10 95883612 95884422 + 0 NA Intergenic Intergenic -9426 ENSMUSG00000112400.1 ENSMUSG00000112400 ENSMUST00000218392 Gm47725 lincRNA Interval_171944 chr9 122821254 122821494 + 0 NA intron (ENSMUSG00000046603.16, intron 5 of 10) protein_coding-intron (ENSMUSG00000046603.16, intron 5 of 10) 8810 ENSMUSG00000088086.1 ENSMUSG00000088086 ENSMUST00000157461 Gm25341 misc_RNA Interval_113775 chr4 58524423 58524900 + 0 NA intron (ENSMUSG00000038668.14, intron 1 of 3) protein_coding-intron (ENSMUSG00000038668.14, intron 1 of 3) 23740 ENSMUSG00000038668.14 ENSMUSG00000038668 ENSMUST00000145361 Lpar1 protein_coding Interval_121339 chr4 155085701 155086989 + 0 NA promoter-TSS (ENSMUSG00000029048.3) protein_coding-promoter-TSS (ENSMUSG00000029048.3) 26 ENSMUSG00000029048.3 ENSMUSG00000029048 ENSMUST00000125357 Rer1 protein_coding Interval_18275 chr10 84517717 84517979 + 0 NA promoter-TSS (ENSMUSG00000111514.1) lincRNA-promoter-TSS (ENSMUSG00000111514.1) -197 ENSMUSG00000111514.1 ENSMUSG00000111514 ENSMUST00000215920 E230014E18Rik lincRNA Interval_78752 chr18 20289561 20290161 + 0 NA Intergenic Intergenic -20950 ENSMUSG00000069441.3 ENSMUSG00000069441 ENSMUST00000077146 Dsg1a protein_coding Interval_90166 chr2 28688367 28689194 + 0 NA TTS (ENSMUSG00000026812.16) protein_coding-TTS (ENSMUSG00000026812.16) 10894 ENSMUSG00000026809.15 ENSMUSG00000026809 ENSMUST00000145014 Spaca9 protein_coding Interval_1780 chr1 33747798 33748180 + 0 NA promoter-TSS (ENSMUSG00000103072.1) TEC-promoter-TSS (ENSMUSG00000103072.1) -18 ENSMUSG00000103072.1 ENSMUSG00000103072 ENSMUST00000195310 Gm37905 TEC Interval_129383 chr5 119646864 119647153 + 0 NA intron (ENSMUSG00000085345.1, intron 1 of 1) antisense-intron (ENSMUSG00000087516.7, intron 1 of 2) 874 ENSMUSG00000085345.1 ENSMUSG00000085345 ENSMUST00000154997 Gm16064 lincRNA Interval_55716 chr14 99264825 99267901 + 0 NA Intergenic Intergenic 25273 ENSMUSG00000100172.1 ENSMUSG00000100172 ENSMUST00000186660 Gm4412 processed_pseudogene Interval_103601 chr3 51108940 51109487 + 0 NA Intergenic Intergenic 5553 ENSMUSG00000103464.1 ENSMUSG00000103464 ENSMUST00000194318 Gm38246 lincRNA Interval_39205 chr12 85824172 85825354 + 0 NA promoter-TSS (ENSMUSG00000021252.11) protein_coding-promoter-TSS (ENSMUSG00000021252.11) -2513 ENSMUSG00000021252.11 ENSMUSG00000021252 ENSMUST00000142331 Erg28 protein_coding Interval_81143 chr18 54901957 54902823 + 0 NA intron (ENSMUSG00000052713.9, intron 2 of 8) protein_coding-intron (ENSMUSG00000052713.9, intron 3 of 9) 34290 ENSMUSG00000118063.1 ENSMUSG00000118063 ENSMUST00000236532 Gm50366 processed_pseudogene Interval_1905 chr1 34459225 34460281 + 0 NA promoter-TSS (ENSMUSG00000026126.15) protein_coding-promoter-TSS (ENSMUSG00000026126.15) -24 ENSMUSG00000026126.15 ENSMUSG00000026126 ENSMUST00000188019 Ptpn18 protein_coding Interval_1042 chr1 14309485 14310361 + 0 NA promoter-TSS (ENSMUSG00000025932.14) protein_coding-promoter-TSS (ENSMUSG00000025932.14) -5353 ENSMUSG00000025932.14 ENSMUSG00000025932 ENSMUST00000185329 Eya1 protein_coding Interval_22902 chr11 17218058 17218581 + 0 NA intron (ENSMUSG00000078970.5, intron 6 of 12) protein_coding-intron (ENSMUSG00000078970.5, intron 1 of 7) -7265 ENSMUSG00000020116.7 ENSMUSG00000020116 ENSMUST00000123754 Pno1 protein_coding Interval_44292 chr13 43419534 43419796 + 0 NA TTS (ENSMUSG00000038546.9) protein_coding-TTS (ENSMUSG00000038546.9) 2131 ENSMUSG00000112942.1 ENSMUSG00000112942 ENSMUST00000220774 Gm47597 processed_pseudogene Interval_5487 chr1 89189264 89189898 + 0 NA Intergenic Intergenic 67400 ENSMUSG00000102083.1 ENSMUSG00000102083 ENSMUST00000191231 Gm5259 processed_pseudogene Interval_157388 chr8 70072279 70073396 + 0 NA promoter-TSS (ENSMUSG00000036151.15) protein_coding-promoter-TSS (ENSMUSG00000036151.15) -2592 ENSMUSG00000036151.15 ENSMUSG00000036151 ENSMUST00000124742 Tm6sf2 protein_coding Interval_128776 chr5 115193229 115194857 + 0 NA exon (ENSMUSG00000029544.16, exon 1 of 6) protein_coding-exon (ENSMUSG00000029544.16, exon 1 of 6) -4300 ENSMUSG00000083182.1 ENSMUSG00000083182 ENSMUST00000122278 Gm13828 processed_pseudogene Interval_34618 chr12 8042573 8042950 + 0 NA TTS (ENSMUSG00000112694.1) antisense-TTS (ENSMUSG00000112694.1) 65113 ENSMUSG00000020609.14 ENSMUSG00000020609 ENSMUST00000171239 Apob protein_coding Interval_137880 chr6 83124858 83125367 + 0 NA promoter-TSS (ENSMUSG00000030034.12) protein_coding-promoter-TSS (ENSMUSG00000030034.12) -244 ENSMUSG00000030034.12 ENSMUSG00000030034 ENSMUST00000203085 Ino80b protein_coding Interval_51401 chr14 27235465 27236323 + 0 NA intron (ENSMUSG00000021895.10, intron 4 of 13) protein_coding-intron (ENSMUSG00000021895.10, intron 4 of 13) -2168 ENSMUSG00000114888.1 ENSMUSG00000114888 ENSMUST00000225718 Gm49616 TEC Interval_108689 chr3 130125876 130126159 + 0 NA Intergenic Intergenic -14363 ENSMUSG00000106276.1 ENSMUSG00000106276 ENSMUST00000200125 Gm9397 processed_pseudogene Interval_113432 chr4 54966225 54966645 + 0 NA intron (ENSMUSG00000060206.11, intron 1 of 12) protein_coding-intron (ENSMUSG00000060206.11, intron 1 of 12) 21387 ENSMUSG00000060206.11 ENSMUSG00000060206 ENSMUST00000079605 Zfp462 protein_coding Interval_32403 chr11 107365335 107367203 + 0 NA intron (ENSMUSG00000040430.18, intron 1 of 9) protein_coding-intron (ENSMUSG00000040430.18, intron 1 of 9) -20714 ENSMUSG00000087683.1 ENSMUSG00000087683 ENSMUST00000129139 Gm11712 antisense Interval_69567 chr16 94327891 94329334 + 0 NA intron (ENSMUSG00000022941.8, intron 1 of 3) protein_coding-intron (ENSMUSG00000022941.8, intron 1 of 3) 192 ENSMUSG00000022941.8 ENSMUSG00000022941 ENSMUST00000023660 Ripply3 protein_coding Interval_130573 chr5 128958983 128959528 + 0 NA Intergenic Intergenic 49291 ENSMUSG00000029428.13 ENSMUSG00000029428 ENSMUST00000199813 Stx2 protein_coding Interval_139073 chr6 94772974 94775135 + 0 NA Intergenic Intergenic -25378 ENSMUSG00000107716.1 ENSMUSG00000107716 ENSMUST00000203986 Gm43997 TEC Interval_78129 chr18 8911451 8912166 + 0 NA Intergenic Intergenic -16427 ENSMUSG00000103172.1 ENSMUSG00000103172 ENSMUST00000195097 Gm37148 TEC Interval_108160 chr3 122073903 122074131 + 0 NA promoter-TSS (ENSMUSG00000028125.14) protein_coding-promoter-TSS (ENSMUSG00000028125.14) 50187 ENSMUSG00000104869.1 ENSMUSG00000104869 ENSMUST00000197868 Gm42544 TEC Interval_97340 chr2 134960115 134961255 + 0 NA intron (ENSMUSG00000051177.16, intron 2 of 6) protein_coding-intron (ENSMUSG00000051177.16, intron 2 of 31) 156736 ENSMUSG00000082399.1 ENSMUSG00000082399 ENSMUST00000118248 Gm14036 processed_pseudogene Interval_25749 chr11 51421463 51422016 + 0 NA intron (ENSMUSG00000063564.13, intron 2 of 28) protein_coding-intron (ENSMUSG00000063564.13, intron 2 of 28) 151304 ENSMUSG00000093734.1 ENSMUSG00000093734 ENSMUST00000177296 Gm25082 misc_RNA Interval_30028 chr11 88778096 88778456 + 0 NA Intergenic Intergenic -34907 ENSMUSG00000085646.1 ENSMUSG00000085646 ENSMUST00000134567 Gm11493 lincRNA Interval_29861 chr11 87390983 87391505 + 0 NA intron (ENSMUSG00000007646.13, intron 5 of 9) protein_coding-intron (ENSMUSG00000007646.13, intron 5 of 8) 13262 ENSMUSG00000007646.13 ENSMUSG00000007646 ENSMUST00000129400 Rad51c protein_coding Interval_101590 chr3 7399101 7400268 + 0 NA intron (ENSMUSG00000027499.12, intron 1 of 2) protein_coding-intron (ENSMUSG00000027499.12, intron 1 of 2) 18775 ENSMUSG00000103274.1 ENSMUSG00000103274 ENSMUST00000192071 Gm37918 processed_pseudogene Interval_61931 chr15 85323974 85324808 + 0 NA Intergenic Intergenic -11854 ENSMUSG00000016541.10 ENSMUSG00000016541 ENSMUST00000163242 Atxn10 protein_coding Interval_113358 chr4 53797465 53797678 + 0 NA Intergenic Intergenic -6115 ENSMUSG00000084403.1 ENSMUSG00000084403 ENSMUST00000117914 Rps15a-ps8 processed_pseudogene Interval_97685 chr2 142746651 142747840 + 0 NA intron (ENSMUSG00000038844.10, intron 15 of 26) protein_coding-intron (ENSMUSG00000038844.10, intron 15 of 25) -39651 ENSMUSG00000088134.1 ENSMUSG00000088134 ENSMUST00000157509 Gm22310 snoRNA Interval_114695 chr4 83924927 83926604 + 0 NA Intergenic Intergenic -36907 ENSMUSG00000085378.1 ENSMUSG00000085378 ENSMUST00000128214 Gm11415 lincRNA Interval_171325 chr9 116368670 116369470 + 0 NA Intergenic Intergenic 37902 ENSMUSG00000110752.1 ENSMUSG00000110752 ENSMUST00000217456 D730003K21Rik lincRNA Interval_33521 chr11 117010727 117010946 + 0 NA Intergenic Intergenic 29352 ENSMUSG00000086902.7 ENSMUSG00000086902 ENSMUST00000152401 Gm11728 lincRNA Interval_22278 chr11 8503574 8504425 + 0 NA intron (ENSMUSG00000020422.14, intron 16 of 30) protein_coding-intron (ENSMUSG00000020422.14, intron 16 of 30) -120146 ENSMUSG00000083553.1 ENSMUSG00000083553 ENSMUST00000117240 Gm11989 processed_pseudogene Interval_80901 chr18 50017489 50018377 + 0 NA intron (ENSMUSG00000062210.13, intron 1 of 3) protein_coding-intron (ENSMUSG00000062210.13, intron 1 of 1) -28807 ENSMUSG00000062210.13 ENSMUSG00000062210 ENSMUST00000148159 Tnfaip8 protein_coding Interval_23647 chr11 24062654 24062986 + 0 NA intron (ENSMUSG00000055010.1, intron 1 of 2) protein_coding-intron (ENSMUSG00000055010.1, intron 1 of 2) 12234 ENSMUSG00000055010.1 ENSMUSG00000055010 ENSMUST00000068360 A830031A19Rik protein_coding Interval_83995 chr19 5998181 5998594 + 0 NA intron (ENSMUSG00000024942.17, intron 10 of 20) protein_coding-intron (ENSMUSG00000024942.17, intron 10 of 21) -12244 ENSMUSG00000037451.8 ENSMUSG00000037451 ENSMUST00000237046 Slc22a20 protein_coding Interval_28750 chr11 78079981 78080876 + 0 NA promoter-TSS (ENSMUSG00000020832.14) protein_coding-promoter-TSS (ENSMUSG00000020832.14) -45 ENSMUSG00000020832.14 ENSMUSG00000020832 ENSMUST00000135154 Eral1 protein_coding Interval_151494 chr7 123067248 123067758 + 0 NA exon (ENSMUSG00000109814.1, exon 4 of 4) lincRNA-exon (ENSMUSG00000109814.1, exon 4 of 4) 36088 ENSMUSG00000109814.1 ENSMUSG00000109814 ENSMUST00000209402 Gm45847 lincRNA Interval_121675 chr5 5003709 5003961 + 0 NA intron (ENSMUSG00000028926.15, intron 2 of 3) protein_coding-intron (ENSMUSG00000028926.15, intron 10 of 14) -18597 ENSMUSG00000105400.1 ENSMUSG00000105400 ENSMUST00000197860 Gm22897 scaRNA Interval_80013 chr18 36647998 36648244 + 0 NA exon (ENSMUSG00000024483.19, exon 29 of 34) protein_coding-exon (ENSMUSG00000024483.19, exon 29 of 34) 261 ENSMUSG00000117942.1 ENSMUSG00000117942 ENSMUST00000140061 Maskbp3 protein_coding Interval_43641 chr13 34371189 34371378 + 0 NA Intergenic Intergenic 23241 ENSMUSG00000113843.1 ENSMUSG00000113843 ENSMUST00000220725 Gm6129 processed_pseudogene Interval_72456 chr17 29920360 29921135 + 0 NA intron (ENSMUSG00000043557.16, intron 3 of 20) protein_coding-intron (ENSMUSG00000043557.16, intron 3 of 20) 30663 ENSMUSG00000086534.2 ENSMUSG00000086534 ENSMUST00000149552 Gm16758 antisense Interval_69541 chr16 94125069 94126207 + 0 NA TTS (ENSMUSG00000062713.8) protein_coding-TTS (ENSMUSG00000062713.8) 40707 ENSMUSG00000062713.8 ENSMUSG00000062713 ENSMUST00000231295 Sim2 protein_coding Interval_38385 chr12 78410944 78411670 + 0 NA intron (ENSMUSG00000047454.12, intron 3 of 22) protein_coding-intron (ENSMUSG00000047454.12, intron 3 of 23) 13172 ENSMUSG00000112090.1 ENSMUSG00000112090 ENSMUST00000218155 Gm48231 TEC Interval_20730 chr10 120587275 120587756 + 0 NA Intergenic Intergenic -18022 ENSMUSG00000088924.1 ENSMUSG00000088924 ENSMUST00000158299 Gm24298 snoRNA Interval_49146 chr13 108527122 108527393 + 0 NA intron (ENSMUSG00000021699.17, intron 1 of 3) protein_coding-intron (ENSMUSG00000021699.17, intron 1 of 3) -28287 ENSMUSG00000099323.1 ENSMUSG00000099323 ENSMUST00000184594 Gm28016 misc_RNA Interval_118924 chr4 134480875 134481678 + 0 NA Intergenic Intergenic -11946 ENSMUSG00000083001.1 ENSMUSG00000083001 ENSMUST00000117209 Gm13250 processed_pseudogene Interval_139914 chr6 112683836 112684409 + 0 NA intron (ENSMUSG00000030254.16, intron 4 of 9) protein_coding-intron (ENSMUSG00000030254.16, intron 4 of 13) 12511 ENSMUSG00000030254.16 ENSMUSG00000030254 ENSMUST00000135092 Rad18 protein_coding Interval_89248 chr2 18444226 18444432 + 0 NA Intergenic Intergenic -105340 ENSMUSG00000082520.2 ENSMUSG00000082520 ENSMUST00000118436 Gm13349 processed_pseudogene Interval_168556 chr9 83547734 83548763 + 0 NA promoter-TSS (ENSMUSG00000032261.16) protein_coding-promoter-TSS (ENSMUSG00000032261.16) -81 ENSMUSG00000032261.16 ENSMUSG00000032261 ENSMUST00000185664 Sh3bgrl2 protein_coding Interval_68465 chr16 77329163 77329502 + 0 NA promoter-TSS (ENSMUSG00000090386.10) processed_transcript-promoter-TSS (ENSMUSG00000090386.10) -23772 ENSMUSG00000102289.1 ENSMUSG00000102289 ENSMUST00000194532 Gm31258 TEC Interval_75646 chr17 69786200 69787978 + 0 NA Intergenic Intergenic -11077 ENSMUSG00000117124.1 ENSMUSG00000117124 ENSMUST00000233218 Gm49895 lincRNA Interval_74075 chr17 46436691 46439151 + 0 NA promoter-TSS (ENSMUSG00000067144.7) protein_coding-promoter-TSS (ENSMUSG00000067144.7) -292 ENSMUSG00000067144.7 ENSMUSG00000067144 ENSMUST00000233575 Slc22a7 protein_coding Interval_15759 chr10 56206707 56206879 + 0 NA intron (ENSMUSG00000038122.9, intron 3 of 29) protein_coding-intron (ENSMUSG00000038122.9, intron 3 of 32) 21896 ENSMUSG00000038122.9 ENSMUSG00000038122 ENSMUST00000217792 Tbc1d32 protein_coding Interval_141225 chr6 125832775 125833035 + 0 NA intron (ENSMUSG00000038115.16, intron 9 of 25) protein_coding-intron (ENSMUSG00000038115.16, intron 10 of 15) -51510 ENSMUSG00000088959.1 ENSMUSG00000088959 ENSMUST00000158334 Gm24947 snRNA Interval_170053 chr9 104088286 104088777 + 0 NA intron (ENSMUSG00000079355.5, intron 2 of 2) protein_coding-intron (ENSMUSG00000090150.10, intron 9 of 19) 12480 ENSMUSG00000079355.5 ENSMUSG00000079355 ENSMUST00000188000 Ackr4 protein_coding Interval_152134 chr7 129923227 129923635 + 0 NA Intergenic Intergenic -38734 ENSMUSG00000108504.1 ENSMUSG00000108504 ENSMUST00000206701 Gm4265 lincRNA Interval_140763 chr6 121120548 121121636 + 0 NA intron (ENSMUSG00000051586.17, intron 1 of 14) protein_coding-intron (ENSMUSG00000051586.17, intron 1 of 14) 4294 ENSMUSG00000108096.1 ENSMUSG00000108096 ENSMUST00000203344 Minpp1-ps processed_pseudogene Interval_43039 chr13 23430732 23433155 + 0 NA promoter-TSS (ENSMUSG00000085024.1) lincRNA-promoter-TSS (ENSMUSG00000085024.1) -1117 ENSMUSG00000085024.1 ENSMUSG00000085024 ENSMUST00000153753 C230035I16Rik lincRNA Interval_11516 chr1 182378633 182378884 + 0 NA Intergenic Intergenic 14777 ENSMUSG00000097260.1 ENSMUSG00000097260 ENSMUST00000181525 Gm5706 processed_pseudogene Interval_131765 chr5 139745587 139746287 + 0 NA Intergenic Intergenic -13103 ENSMUSG00000036718.17 ENSMUSG00000036718 ENSMUST00000165645 Micall2 protein_coding Interval_166329 chr9 58369783 58370087 + 0 NA promoter-TSS (ENSMUSG00000100487.1) lincRNA-promoter-TSS (ENSMUSG00000100487.1) 434 ENSMUSG00000036244.5 ENSMUSG00000036244 ENSMUST00000213847 Tbc1d21 protein_coding Interval_83019 chr18 80454166 80455460 + 0 NA intron (ENSMUSG00000033323.14, intron 5 of 12) protein_coding-intron (ENSMUSG00000033323.14, intron 5 of 12) -13954 ENSMUSG00000033323.14 ENSMUSG00000033323 ENSMUST00000161003 Ctdp1 protein_coding Interval_23391 chr11 22172256 22172508 + 0 NA promoter-TSS (ENSMUSG00000042302.14) protein_coding-promoter-TSS (ENSMUSG00000042302.14) 114413 ENSMUSG00000042302.14 ENSMUSG00000042302 ENSMUST00000137594 Ehbp1 protein_coding Interval_152083 chr7 128937838 128938983 + 0 NA Intergenic Intergenic 59611 ENSMUSG00000108540.1 ENSMUSG00000108540 ENSMUST00000206199 Gm4768 processed_pseudogene Interval_92391 chr2 59443013 59443203 + 0 NA Intergenic Intergenic -41561 ENSMUSG00000026989.5 ENSMUSG00000026989 ENSMUST00000144415 Dapl1 protein_coding Interval_76006 chr17 74315602 74317063 + 0 NA promoter-TSS (ENSMUSG00000024067.14) protein_coding-promoter-TSS (ENSMUSG00000024067.14) 131 ENSMUSG00000024067.14 ENSMUSG00000024067 ENSMUST00000233059 Dpy30 protein_coding Interval_48478 chr13 99344008 99345070 + 0 NA promoter-TSS (ENSMUSG00000041632.7) protein_coding-promoter-TSS (ENSMUSG00000041632.7) 166 ENSMUSG00000021650.7 ENSMUSG00000021650 ENSMUST00000022153 Ptcd2 protein_coding Interval_121511 chr5 3027427 3027774 + 0 NA Intergenic Intergenic -2638 ENSMUSG00000090577.1 ENSMUSG00000090577 ENSMUST00000167579 Gm3027 unprocessed_pseudogene Interval_112823 chr4 45307507 45308971 + 0 NA intron (ENSMUSG00000035601.9, intron 4 of 6) protein_coding-intron (ENSMUSG00000035601.9, intron 6 of 8) -5859 ENSMUSG00000035601.9 ENSMUSG00000035601 ENSMUST00000145756 Trmt10b protein_coding Interval_70225 chr17 6815810 6816182 + 0 NA intron (ENSMUSG00000116644.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000116644.1, intron 1 of 1) 7487 ENSMUSG00000116644.1 ENSMUSG00000116644 ENSMUST00000231816 4933426B08Rik lincRNA Interval_89180 chr2 17881185 17882688 + 0 NA Intergenic Intergenic -83952 ENSMUSG00000081851.1 ENSMUSG00000081851 ENSMUST00000120245 Gm13323 processed_pseudogene Interval_20323 chr10 116885417 116885589 + 0 NA intron (ENSMUSG00000034057.8, intron 1 of 24) protein_coding-intron (ENSMUSG00000034057.8, intron 1 of 24) 11416 ENSMUSG00000034057.8 ENSMUSG00000034057 ENSMUST00000048229 Myrfl protein_coding Interval_13144 chr10 12443377 12443759 + 0 NA intron (ENSMUSG00000019820.11, intron 12 of 24) protein_coding-intron (ENSMUSG00000019820.11, intron 61 of 73) -21972 ENSMUSG00000112816.1 ENSMUSG00000112816 ENSMUST00000220361 Gm48798 TEC Interval_72973 chr17 33899452 33902248 + 0 NA Intergenic Intergenic -4285 ENSMUSG00000092349.1 ENSMUSG00000092349 ENSMUST00000172817 Smim40 protein_coding Interval_75165 chr17 64229661 64232261 + 0 NA Intergenic Intergenic 90654 ENSMUSG00000080455.1 ENSMUSG00000080455 ENSMUST00000116805 Gm24194 miRNA Interval_93728 chr2 76254990 76255191 + 0 NA intron (ENSMUSG00000075270.11, intron 2 of 19) protein_coding-intron (ENSMUSG00000075270.11, intron 2 of 19) -39696 ENSMUSG00000075270.11 ENSMUSG00000075270 ENSMUST00000144892 Pde11a protein_coding Interval_167049 chr9 64893859 64894397 + 0 NA intron (ENSMUSG00000053641.9, intron 3 of 4) protein_coding-intron (ENSMUSG00000053641.9, intron 21 of 33) -12203 ENSMUSG00000089336.1 ENSMUSG00000089336 ENSMUST00000158711 Gm24347 snoRNA Interval_106271 chr3 95041949 95043077 + 0 NA promoter-TSS (ENSMUSG00000005625.15) protein_coding-promoter-TSS (ENSMUSG00000005625.15) -8597 ENSMUSG00000005625.15 ENSMUSG00000005625 ENSMUST00000143688 Psmd4 protein_coding Interval_138982 chr6 93990249 93990510 + 0 NA intron (ENSMUSG00000045095.16, intron 1 of 24) protein_coding-intron (ENSMUSG00000045095.16, intron 1 of 21) -77875 ENSMUSG00000045095.16 ENSMUSG00000045095 ENSMUST00000203034 Magi1 protein_coding Interval_135054 chr6 34994895 34995918 + 0 NA Intergenic Intergenic -7002 ENSMUSG00000029847.13 ENSMUSG00000029847 ENSMUST00000144079 Slc23a4 protein_coding Interval_145113 chr7 30108884 30109510 + 0 NA Intergenic Intergenic -8262 ENSMUSG00000093495.1 ENSMUSG00000093495 ENSMUST00000116939 Gm23368 miRNA Interval_24445 chr11 33302631 33302916 + 0 NA TTS (ENSMUSG00000040594.19) protein_coding-TTS (ENSMUSG00000040594.19) -26036 ENSMUSG00000098456.1 ENSMUSG00000098456 ENSMUST00000183831 Gm12117 protein_coding Interval_30079 chr11 89034634 89035998 + 0 NA exon (ENSMUSG00000000276.11, exon 12 of 12) protein_coding-exon (ENSMUSG00000000276.11, exon 12 of 12) 25432 ENSMUSG00000000276.11 ENSMUSG00000000276 ENSMUST00000152772 Dgke protein_coding Interval_102030 chr3 15274101 15275272 + 0 NA Intergenic Intergenic 57616 ENSMUSG00000078783.1 ENSMUSG00000078783 ENSMUST00000108361 Gm9733 protein_coding Interval_104015 chr3 57294621 57295890 + 0 NA promoter-TSS (ENSMUSG00000027800.14) protein_coding-promoter-TSS (ENSMUSG00000027800.14) -703 ENSMUSG00000027800.14 ENSMUSG00000027800 ENSMUST00000196704 Tm4sf1 protein_coding Interval_3473 chr1 58677285 58678207 + 0 NA intron (ENSMUSG00000047528.13, intron 5 of 13) protein_coding-intron (ENSMUSG00000047528.13, intron 6 of 14) 14696 ENSMUSG00000047528.13 ENSMUSG00000047528 ENSMUST00000188839 Flacc1 protein_coding Interval_166324 chr9 58336849 58337591 + 0 NA Intergenic Intergenic -24034 ENSMUSG00000032334.10 ENSMUSG00000032334 ENSMUST00000061799 Loxl1 protein_coding Interval_118426 chr4 131431197 131431493 + 0 NA Intergenic Intergenic -55852 ENSMUSG00000078531.3 ENSMUSG00000078531 ENSMUST00000149942 Gm831 lincRNA Interval_45054 chr13 51762742 51763413 + 0 NA intron (ENSMUSG00000021451.16, intron 2 of 16) protein_coding-intron (ENSMUSG00000021451.16, intron 2 of 15) -2217 ENSMUSG00000092648.1 ENSMUSG00000092648 ENSMUST00000174907 Gm23566 miRNA Interval_167637 chr9 71461464 71462293 + 0 NA Intergenic Intergenic 24027 ENSMUSG00000032199.13 ENSMUSG00000032199 ENSMUST00000233263 Polr2m protein_coding Interval_64084 chr16 7457411 7458414 + 0 NA Intergenic Intergenic 251154 ENSMUSG00000115989.1 ENSMUSG00000115989 ENSMUST00000229672 Gm49533 processed_pseudogene Interval_161074 chr8 117305136 117305921 + 0 NA intron (ENSMUSG00000034390.16, intron 1 of 10) protein_coding-intron (ENSMUSG00000034390.16, intron 1 of 20) -117888 ENSMUSG00000034390.16 ENSMUSG00000034390 ENSMUST00000212884 Cmip protein_coding Interval_77490 chr17 90119776 90120189 + 0 NA intron (ENSMUSG00000024109.18, intron 2 of 3) protein_coding-intron (ENSMUSG00000024109.18, intron 19 of 20) -142570 ENSMUSG00000092706.1 ENSMUSG00000092706 ENSMUST00000174965 Gm24510 miRNA Interval_34298 chr12 3228832 3229562 + 0 NA exon (ENSMUSG00000112719.1, exon 1 of 1) transcribed_processed_pseudogene-exon (ENSMUSG00000112719.1, exon 1 of 1) 694 ENSMUSG00000112719.1 ENSMUSG00000112719 ENSMUST00000219904 Gm45925 transcribed_processed_pseudogene Interval_20030 chr10 112269789 112272396 + 0 NA promoter-TSS (ENSMUSG00000035681.7) protein_coding-promoter-TSS (ENSMUSG00000035681.7) -39951 ENSMUSG00000112564.1 ENSMUSG00000112564 ENSMUST00000219794 Gm47419 antisense Interval_155909 chr8 40961450 40963795 + 0 NA intron (ENSMUSG00000031595.9, intron 2 of 5) protein_coding-intron (ENSMUSG00000031595.9, intron 2 of 5) 36410 ENSMUSG00000031595.9 ENSMUSG00000031595 ENSMUST00000034004 Pdgfrl protein_coding Interval_113000 chr4 46716388 46716641 + 0 NA intron (ENSMUSG00000039809.10, intron 13 of 18) protein_coding-intron (ENSMUSG00000039809.10, intron 13 of 18) -66305 ENSMUSG00000039813.14 ENSMUSG00000039813 ENSMUST00000107750 Tbc1d2 protein_coding Interval_62883 chr15 97691852 97692234 + 0 NA intron (ENSMUSG00000022466.6, intron 7 of 16) protein_coding-intron (ENSMUSG00000022466.6, intron 7 of 16) -11690 ENSMUSG00000022466.6 ENSMUSG00000022466 ENSMUST00000229008 Rpap3 protein_coding Interval_79539 chr18 33162195 33162847 + 0 NA intron (ENSMUSG00000038128.7, intron 10 of 14) protein_coding-intron (ENSMUSG00000038128.7, intron 7 of 10) 51300 ENSMUSG00000024378.9 ENSMUSG00000024378 ENSMUST00000141617 Stard4 protein_coding Interval_156367 chr8 47749495 47751312 + 0 NA promoter-TSS (ENSMUSG00000110665.1) lincRNA-promoter-TSS (ENSMUSG00000110665.1) -269 ENSMUSG00000110665.1 ENSMUSG00000110665 ENSMUST00000212428 Gm31786 lincRNA Interval_81714 chr18 63791821 63792092 + 0 NA intron (ENSMUSG00000040560.10, intron 17 of 27) protein_coding-intron (ENSMUSG00000040560.10, intron 17 of 27) -28739 ENSMUSG00000117977.1 ENSMUSG00000117977 ENSMUST00000236836 Gm50106 antisense Interval_3559 chr1 59584456 59586054 + 0 NA intron (ENSMUSG00000047361.16, intron 12 of 19) protein_coding-intron (ENSMUSG00000047361.16, intron 12 of 19) 2859 ENSMUSG00000047361.16 ENSMUSG00000047361 ENSMUST00000190490 Gm973 protein_coding Interval_154389 chr8 15270267 15270870 + 0 NA intron (ENSMUSG00000110286.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000110286.1, intron 1 of 2) -43031 ENSMUSG00000077503.1 ENSMUSG00000077503 ENSMUST00000104315 Gm24231 snoRNA Interval_165846 chr9 53786288 53787323 + 0 NA intron (ENSMUSG00000042195.9, intron 1 of 7) protein_coding-intron (ENSMUSG00000042195.9, intron 1 of 7) -23912 ENSMUSG00000042195.9 ENSMUSG00000042195 ENSMUST00000216515 Slc35f2 protein_coding Interval_143207 chr7 4501071 4502918 + 0 NA promoter-TSS (ENSMUSG00000019254.16) protein_coding-promoter-TSS (ENSMUSG00000019254.16) 13981 ENSMUSG00000064179.13 ENSMUSG00000064179 ENSMUST00000163560 Tnnt1 protein_coding Interval_118693 chr4 133223827 133224149 + 0 NA exon (ENSMUSG00000028865.14, exon 4 of 4) protein_coding-exon (ENSMUSG00000028865.14, exon 4 of 4) 11082 ENSMUSG00000028865.14 ENSMUSG00000028865 ENSMUST00000134713 Cd164l2 protein_coding Interval_55826 chr14 100814527 100814890 + 0 NA Intergenic Intergenic 2521 ENSMUSG00000115721.1 ENSMUSG00000115721 ENSMUST00000226241 Gm49239 processed_pseudogene Interval_131211 chr5 135834830 135836123 + 0 NA intron (ENSMUSG00000039860.19, intron 2 of 2) protein_coding-intron (ENSMUSG00000039860.19, intron 2 of 15) 1896 ENSMUSG00000094486.1 ENSMUSG00000094486 ENSMUST00000175494 Gm23268 miRNA Interval_62661 chr15 96038972 96039237 + 0 NA Intergenic Intergenic 15721 ENSMUSG00000078925.11 ENSMUSG00000078925 ENSMUST00000140253 D030018L15Rik lincRNA Interval_44849 chr13 49067228 49067435 + 0 NA exon (ENSMUSG00000037989.15, exon 19 of 28) protein_coding-exon (ENSMUSG00000037989.15, exon 19 of 28) 80681 ENSMUSG00000037989.15 ENSMUSG00000037989 ENSMUST00000159633 Wnk2 protein_coding Interval_49197 chr13 109343167 109344350 + 0 NA intron (ENSMUSG00000021699.17, intron 1 of 14) protein_coding-intron (ENSMUSG00000021699.17, intron 1 of 14) 19014 ENSMUSG00000076946.2 ENSMUSG00000076946 ENSMUST00000103758 Mir582 miRNA Interval_5298 chr1 87326416 87327817 + 0 NA promoter-TSS (ENSMUSG00000048000.15) protein_coding-promoter-TSS (ENSMUSG00000048000.15) 70 ENSMUSG00000048000.15 ENSMUSG00000048000 ENSMUST00000174482 Gigyf2 protein_coding Interval_42821 chr13 20040793 20041550 + 0 NA Intergenic Intergenic -45367 ENSMUSG00000050243.6 ENSMUSG00000050243 ENSMUST00000091762 Gm5446 processed_pseudogene Interval_129807 chr5 122468113 122469423 + 0 NA intron (ENSMUSG00000029467.15, intron 8 of 20) protein_coding-intron (ENSMUSG00000029467.15, intron 8 of 19) 16231 ENSMUSG00000105434.1 ENSMUSG00000105434 ENSMUST00000197944 Gm43359 TEC Interval_131495 chr5 137562963 137563422 + 0 NA TTS (ENSMUSG00000029712.14) protein_coding-TTS (ENSMUSG00000029712.14) -6672 ENSMUSG00000029716.13 ENSMUSG00000029716 ENSMUST00000199069 Tfr2 protein_coding Interval_157532 chr8 71248115 71248462 + 0 NA TTS (ENSMUSG00000035439.13) protein_coding-TTS (ENSMUSG00000035439.13) 24172 ENSMUSG00000035439.13 ENSMUSG00000035439 ENSMUST00000128833 Haus8 protein_coding Interval_57854 chr15 23356851 23357494 + 0 NA intron (ENSMUSG00000040420.15, intron 3 of 10) protein_coding-intron (ENSMUSG00000040420.15, intron 4 of 9) 57285 ENSMUSG00000115560.1 ENSMUSG00000115560 ENSMUST00000226326 Gm49191 antisense Interval_118604 chr4 132731509 132733652 + 0 NA promoter-TSS (ENSMUSG00000037752.4) protein_coding-promoter-TSS (ENSMUSG00000037752.4) -52 ENSMUSG00000037752.4 ENSMUSG00000037752 ENSMUST00000143642 Xkr8 protein_coding Interval_83453 chr18 85689872 85690075 + 0 NA Intergenic Intergenic 26752 ENSMUSG00000117854.1 ENSMUSG00000117854 ENSMUST00000237113 Gm7612 processed_pseudogene Interval_172275 chrX 12224783 12225961 + 0 NA Intergenic Intergenic -45305 ENSMUSG00000083486.1 ENSMUSG00000083486 ENSMUST00000119545 Gm14521 processed_pseudogene Interval_57598 chr15 12704124 12704376 + 0 NA intron (ENSMUSG00000022197.16, intron 2 of 4) protein_coding-intron (ENSMUSG00000022197.16, intron 2 of 4) 9126 ENSMUSG00000095842.1 ENSMUSG00000095842 ENSMUST00000178350 Gm24302 miRNA Interval_108402 chr3 126668612 126669156 + 0 NA exon (ENSMUSG00000086679.2, exon 1 of 2) antisense-exon (ENSMUSG00000086679.2, exon 1 of 2) 160 ENSMUSG00000086679.2 ENSMUSG00000086679 ENSMUST00000132762 Gm15551 antisense Interval_71564 chr17 24577374 24578051 + 0 NA promoter-TSS (ENSMUSG00000032855.6) protein_coding-promoter-TSS (ENSMUSG00000032855.6) -9907 ENSMUSG00000032855.6 ENSMUSG00000032855 ENSMUST00000228581 Pkd1 protein_coding Interval_145647 chr7 36713851 36714210 + 0 NA intron (ENSMUSG00000021217.7, intron 1 of 1) protein_coding-intron (ENSMUSG00000021217.7, intron 1 of 1) 3856 ENSMUSG00000103882.1 ENSMUSG00000103882 ENSMUST00000194416 Gm37452 TEC Interval_13090 chr10 11280526 11282070 + 0 NA promoter-TSS (ENSMUSG00000047648.13) protein_coding-promoter-TSS (ENSMUSG00000047648.13) -32 ENSMUSG00000047648.13 ENSMUSG00000047648 ENSMUST00000070300 Fbxo30 protein_coding Interval_118665 chr4 133073411 133074554 + 0 NA intron (ENSMUSG00000037692.14, intron 6 of 6) protein_coding-intron (ENSMUSG00000037692.14, intron 5 of 5) -56558 ENSMUSG00000028868.13 ENSMUSG00000028868 ENSMUST00000136637 Wasf2 protein_coding Interval_42141 chr13 9121111 9121326 + 0 NA intron (ENSMUSG00000033499.14, intron 2 of 3) protein_coding-intron (ENSMUSG00000033499.14, intron 1 of 16) 11913 ENSMUSG00000088442.1 ENSMUSG00000088442 ENSMUST00000157817 Gm23553 misc_RNA Interval_57914 chr15 25372351 25372588 + 0 NA intron (ENSMUSG00000045763.8, intron 1 of 1) protein_coding-intron (ENSMUSG00000045763.8, intron 1 of 1) -39821 ENSMUSG00000115355.1 ENSMUSG00000115355 ENSMUST00000228450 4930445E18Rik lincRNA Interval_14967 chr10 41536255 41536486 + 0 NA Intergenic Intergenic 16478 ENSMUSG00000019818.15 ENSMUSG00000019818 ENSMUST00000186388 Cd164 protein_coding Interval_132797 chr5 147942481 147945570 + 0 NA Intergenic Intergenic 13141 ENSMUSG00000085565.1 ENSMUSG00000085565 ENSMUST00000138406 Gm15721 lincRNA Interval_126197 chr5 82086928 82088225 + 0 NA Intergenic Intergenic 33786 ENSMUSG00000106860.1 ENSMUSG00000106860 ENSMUST00000201220 1700008H02Rik TEC Interval_14259 chr10 29931999 29933103 + 0 NA Intergenic Intergenic 68881 ENSMUSG00000111195.1 ENSMUSG00000111195 ENSMUST00000213166 Gm48215 lincRNA Interval_63292 chr15 100132300 100132520 + 0 NA intron (ENSMUSG00000023026.16, intron 3 of 37) protein_coding-intron (ENSMUSG00000023026.16, intron 3 of 37) -24249 ENSMUSG00000116311.1 ENSMUSG00000116311 ENSMUST00000229204 4930478M13Rik antisense Interval_28467 chr11 76167179 76168406 + 0 NA intron (ENSMUSG00000017288.15, intron 2 of 7) protein_coding-intron (ENSMUSG00000017288.15, intron 2 of 21) 11842 ENSMUSG00000017288.15 ENSMUSG00000017288 ENSMUST00000129256 Vps53 protein_coding Interval_86965 chr19 45242510 45243389 + 0 NA Intergenic Intergenic -7137 ENSMUSG00000025216.9 ENSMUSG00000025216 ENSMUST00000099401 Lbx1 protein_coding Interval_64572 chr16 13409371 13409722 + 0 NA intron (ENSMUSG00000009569.14, intron 13 of 14) protein_coding-intron (ENSMUSG00000009569.14, intron 15 of 16) -39977 ENSMUSG00000076972.2 ENSMUSG00000076972 ENSMUST00000103784 Mir193b miRNA Interval_104334 chr3 63582016 63582274 + 0 NA Intergenic Intergenic 93152 ENSMUSG00000088957.1 ENSMUSG00000088957 ENSMUST00000158332 Gm24946 snRNA Interval_109025 chr3 135250279 135251232 + 0 NA intron (ENSMUSG00000045328.11, intron 35 of 45) protein_coding-intron (ENSMUSG00000045328.11, intron 35 of 45) -8487 ENSMUSG00000045328.11 ENSMUSG00000045328 ENSMUST00000199497 Cenpe protein_coding Interval_73675 chr17 42683022 42683596 + 0 NA intron (ENSMUSG00000023918.12, intron 1 of 9) protein_coding-intron (ENSMUSG00000023918.12, intron 1 of 9) 8953 ENSMUSG00000023918.12 ENSMUSG00000023918 ENSMUST00000164524 Adgrf4 protein_coding Interval_68559 chr16 78644877 78645354 + 0 NA Intergenic Intergenic 20368 ENSMUSG00000093988.1 ENSMUSG00000093988 ENSMUST00000083459 Gm24861 snRNA Interval_134536 chr6 29399867 29400594 + 0 NA TTS (ENSMUSG00000029769.16) protein_coding-TTS (ENSMUSG00000029769.16) -2654 ENSMUSG00000104796.1 ENSMUSG00000104796 ENSMUST00000196017 Gm44354 miRNA Interval_88833 chr2 11525819 11526098 + 0 NA intron (ENSMUSG00000102329.1, intron 1 of 2) antisense-intron (ENSMUSG00000102329.1, intron 1 of 2) 4252 ENSMUSG00000102329.1 ENSMUSG00000102329 ENSMUST00000192087 Gm10851 antisense Interval_91133 chr2 35349060 35349779 + 0 NA Intergenic Intergenic 9010 ENSMUSG00000075391.6 ENSMUSG00000075391 ENSMUST00000120770 Glo1-ps processed_pseudogene Interval_103006 chr3 34234433 34234777 + 0 NA intron (ENSMUSG00000105265.4, intron 2 of 2) processed_transcript-intron (ENSMUSG00000105265.4, intron 2 of 4) 37741 ENSMUSG00000105265.4 ENSMUSG00000105265 ENSMUST00000197697 Sox2ot processed_transcript Interval_173674 chrX 101772048 101772471 + 0 NA Intergenic Intergenic 3724 ENSMUSG00000084284.1 ENSMUSG00000084284 ENSMUST00000121768 Tpt1-ps6 processed_pseudogene Interval_47131 chr13 76123105 76123344 + 0 NA intron (ENSMUSG00000033991.9, intron 4 of 6) protein_coding-intron (ENSMUSG00000033991.9, intron 12 of 43) -14621 ENSMUSG00000033991.9 ENSMUSG00000033991 ENSMUST00000225147 Ttc37 protein_coding Interval_147769 chr7 73461474 73462694 + 0 NA promoter-TSS (ENSMUSG00000078671.11) protein_coding-promoter-TSS (ENSMUSG00000078671.11) -1451 ENSMUSG00000108741.1 ENSMUSG00000108741 ENSMUST00000206316 Gm44553 TEC Interval_53886 chr14 63141736 63142134 + 0 NA TTS (ENSMUSG00000021939.8) protein_coding-TTS (ENSMUSG00000021939.8) 19421 ENSMUSG00000021939.8 ENSMUSG00000021939 ENSMUST00000225540 Ctsb protein_coding Interval_86576 chr19 41813911 41815083 + 0 NA Intergenic Intergenic -12450 ENSMUSG00000025154.15 ENSMUSG00000025154 ENSMUST00000177495 Arhgap19 protein_coding Interval_104440 chr3 65670134 65670962 + 0 NA intron (ENSMUSG00000074579.14, intron 3 of 3) protein_coding-intron (ENSMUSG00000074579.14, intron 2 of 2) 4280 ENSMUSG00000074579.14 ENSMUSG00000074579 ENSMUST00000161851 Lekr1 protein_coding Interval_14799 chr10 40004265 40004936 + 0 NA intron (ENSMUSG00000038522.7, intron 3 of 3) protein_coding-intron (ENSMUSG00000038522.7, intron 3 of 3) -4955 ENSMUSG00000111608.1 ENSMUSG00000111608 ENSMUST00000214611 Gm48839 processed_pseudogene Interval_68546 chr16 78548424 78549541 + 0 NA intron (ENSMUSG00000022864.14, intron 2 of 3) protein_coding-intron (ENSMUSG00000022864.14, intron 2 of 4) -11334 ENSMUSG00000116628.1 ENSMUSG00000116628 ENSMUST00000231846 4930478L05Rik antisense Interval_102948 chr3 33207299 33207543 + 0 NA Intergenic Intergenic 16616 ENSMUSG00000103896.1 ENSMUSG00000103896 ENSMUST00000192599 Gm37128 processed_pseudogene Interval_56341 chr14 117881969 117882673 + 0 NA intron (ENSMUSG00000058571.11, intron 5 of 9) protein_coding-intron (ENSMUSG00000058571.11, intron 5 of 8) 71526 ENSMUSG00000098648.1 ENSMUSG00000098648 ENSMUST00000183564 Mir6239 miRNA Interval_42053 chr13 6921905 6922889 + 0 NA Intergenic Intergenic 3454 ENSMUSG00000113932.1 ENSMUSG00000113932 ENSMUST00000220700 2900024D18Rik TEC Interval_43086 chr13 23750989 23752917 + 0 NA promoter-TSS (ENSMUSG00000069267.2) protein_coding-promoter-TSS (ENSMUSG00000069267.2) -314 ENSMUSG00000069267.2 ENSMUSG00000069267 ENSMUST00000091703 H3c2 protein_coding Interval_104877 chr3 77370978 77371259 + 0 NA Intergenic Intergenic 192752 ENSMUSG00000102489.1 ENSMUSG00000102489 ENSMUST00000192011 Dnmt3a-ps1 processed_pseudogene Interval_144587 chr7 26592305 26594657 + 0 NA Intergenic Intergenic 24983 ENSMUSG00000091924.2 ENSMUSG00000091924 ENSMUST00000171039 Vmn1r185 protein_coding Interval_2433 chr1 39325640 39325917 + 0 NA intron (ENSMUSG00000026077.15, intron 9 of 20) protein_coding-intron (ENSMUSG00000026077.15, intron 9 of 20) 10879 ENSMUSG00000092563.1 ENSMUSG00000092563 ENSMUST00000173076 Gm3617 processed_pseudogene Interval_14509 chr10 34483300 34484440 + 0 NA TTS (ENSMUSG00000019779.15) protein_coding-TTS (ENSMUSG00000019779.15) 338 ENSMUSG00000019779.15 ENSMUSG00000019779 ENSMUST00000215594 Frk protein_coding Interval_94179 chr2 84882570 84882937 + 0 NA intron (ENSMUSG00000050896.12, intron 1 of 2) protein_coding-intron (ENSMUSG00000050896.12, intron 1 of 2) 3957 ENSMUSG00000050896.12 ENSMUSG00000050896 ENSMUST00000151759 Rtn4rl2 protein_coding Interval_98512 chr2 152896777 152896991 + 0 NA Intergenic Intergenic -14468 ENSMUSG00000027470.9 ENSMUSG00000027470 ENSMUST00000028970 Mylk2 protein_coding Interval_88240 chr19 61042619 61043391 + 0 NA intron (ENSMUSG00000003228.9, intron 3 of 4) protein_coding-intron (ENSMUSG00000003228.9, intron 3 of 15) -29460 ENSMUSG00000088894.1 ENSMUSG00000088894 ENSMUST00000158269 Gm22520 snoRNA Interval_89809 chr2 25581502 25582222 + 0 NA promoter-TSS (ENSMUSG00000029419.8) protein_coding-promoter-TSS (ENSMUSG00000029419.8) -105 ENSMUSG00000029419.8 ENSMUSG00000029419 ENSMUST00000187017 Ajm1 protein_coding Interval_2127 chr1 36599185 36599435 + 0 NA TTS (ENSMUSG00000046337.17) protein_coding-TTS (ENSMUSG00000046337.17) 1122 ENSMUSG00000046337.17 ENSMUSG00000046337 ENSMUST00000114981 Fam178b protein_coding Interval_159145 chr8 91060294 91061323 + 0 NA TTS (ENSMUSG00000089179.1) snoRNA-TTS (ENSMUSG00000089179.1) 588 ENSMUSG00000089179.1 ENSMUSG00000089179 ENSMUST00000158554 Gm22428 snoRNA Interval_161953 chr8 124019670 124021949 + 0 NA promoter-TSS (ENSMUSG00000031976.14) protein_coding-promoter-TSS (ENSMUSG00000031976.14) 502 ENSMUSG00000038697.15 ENSMUSG00000038697 ENSMUST00000213055 Taf5l protein_coding Interval_43334 chr13 29331610 29331787 + 0 NA intron (ENSMUSG00000006191.17, intron 15 of 15) protein_coding-intron (ENSMUSG00000006191.17, intron 15 of 15) -95078 ENSMUSG00000086423.1 ENSMUSG00000086423 ENSMUST00000137593 Gm11364 sense_intronic Interval_98920 chr2 156025686 156025956 + 0 NA promoter-TSS (ENSMUSG00000013338.16) protein_coding-promoter-TSS (ENSMUSG00000013338.16) 10807 ENSMUSG00000013338.16 ENSMUSG00000013338 ENSMUST00000130764 Fer1l4 protein_coding Interval_34936 chr12 14088909 14089950 + 0 NA Intergenic Intergenic 41219 ENSMUSG00000113167.1 ENSMUSG00000113167 ENSMUST00000222949 Gm48482 TEC Interval_41078 chr12 111038395 111040589 + 0 NA promoter-TSS (ENSMUSG00000037896.17) protein_coding-promoter-TSS (ENSMUSG00000037896.17) -306 ENSMUSG00000037896.17 ENSMUSG00000037896 ENSMUST00000116388 Rcor1 protein_coding Interval_37634 chr12 70627533 70627995 + 0 NA Intergenic Intergenic -22418 ENSMUSG00000114005.1 ENSMUSG00000114005 ENSMUST00000220504 Gm24474 lincRNA Interval_128367 chr5 112835459 112836872 + 0 NA intron (ENSMUSG00000072720.9, intron 12 of 16) protein_coding-intron (ENSMUSG00000072720.9, intron 17 of 43) 36331 ENSMUSG00000072720.9 ENSMUSG00000072720 ENSMUST00000183273 Myo18b protein_coding Interval_165555 chr9 49440164 49441257 + 0 NA intron (ENSMUSG00000040219.4, intron 20 of 21) protein_coding-intron (ENSMUSG00000040219.4, intron 20 of 21) -21274 ENSMUSG00000032257.6 ENSMUSG00000032257 ENSMUST00000216227 Ankk1 protein_coding Interval_46286 chr13 63401154 63401675 + 0 NA intron (ENSMUSG00000021461.17, intron 1 of 10) protein_coding-intron (ENSMUSG00000021461.17, intron 2 of 15) 13353 ENSMUSG00000113126.1 ENSMUSG00000113126 ENSMUST00000220476 Gm47588 TEC Interval_110406 chr3 157861156 157861567 + 0 NA Intergenic Intergenic 27513 ENSMUSG00000104862.1 ENSMUSG00000104862 ENSMUST00000200636 Gm6520 processed_pseudogene Interval_46894 chr13 73259435 73261275 + 0 NA promoter-TSS (ENSMUSG00000021604.15) protein_coding-promoter-TSS (ENSMUSG00000021604.15) -124 ENSMUSG00000021604.15 ENSMUSG00000021604 ENSMUST00000022095 Irx4 protein_coding Interval_64156 chr16 8762716 8763683 + 0 NA intron (ENSMUSG00000022710.17, intron 1 of 31) protein_coding-intron (ENSMUSG00000022710.17, intron 1 of 31) 3077 ENSMUSG00000084737.1 ENSMUSG00000084737 ENSMUST00000122788 Gm25805 snRNA Interval_144364 chr7 24686923 24687808 + 0 NA Intergenic Intergenic 3059 ENSMUSG00000108768.1 ENSMUSG00000108768 ENSMUST00000206192 Gm44971 processed_pseudogene Interval_46240 chr13 62887418 62888454 + 0 NA exon (ENSMUSG00000069805.10, exon 1 of 7) protein_coding-exon (ENSMUSG00000069805.10, exon 1 of 7) -15178 ENSMUSG00000069805.10 ENSMUSG00000069805 ENSMUST00000134814 Fbp1 protein_coding Interval_28746 chr11 78050169 78050539 + 0 NA intron (ENSMUSG00000061981.14, intron 2 of 10) protein_coding-intron (ENSMUSG00000061981.14, intron 2 of 10) 12423 ENSMUSG00000061981.14 ENSMUSG00000061981 ENSMUST00000136353 Flot2 protein_coding Interval_121274 chr4 154634649 154638522 + 0 NA promoter-TSS (ENSMUSG00000085069.2) antisense-promoter-TSS (ENSMUSG00000085069.2) -991 ENSMUSG00000085069.2 ENSMUSG00000085069 ENSMUST00000136217 Prdm16os antisense Interval_169287 chr9 96162596 96164408 + 0 NA intron (ENSMUSG00000041440.18, intron 10 of 15) protein_coding-intron (ENSMUSG00000041440.18, intron 11 of 15) -7414 ENSMUSG00000041440.18 ENSMUSG00000041440 ENSMUST00000189249 Gk5 protein_coding Interval_69106 chr16 90711157 90713206 + 0 NA Intergenic Intergenic 14958 ENSMUSG00000022978.11 ENSMUSG00000022978 ENSMUST00000147546 Mis18a protein_coding Interval_38629 chr12 80672871 80673978 + 0 NA exon (ENSMUSG00000048833.9, exon 1 of 1) protein_coding-exon (ENSMUSG00000048833.9, exon 1 of 1) 19042 ENSMUSG00000044062.7 ENSMUSG00000044062 ENSMUST00000153297 Plekhd1os antisense Interval_126682 chr5 92028887 92029146 + 0 NA intron (ENSMUSG00000029403.14, intron 1 of 2) protein_coding-intron (ENSMUSG00000029403.14, intron 6 of 12) 14867 ENSMUSG00000029403.14 ENSMUSG00000029403 ENSMUST00000201895 Cdkl2 protein_coding Interval_98079 chr2 147702646 147703013 + 0 NA Intergenic Intergenic -7864 ENSMUSG00000051986.6 ENSMUSG00000051986 ENSMUST00000152542 A530006G24Rik lincRNA Interval_165232 chr9 45589755 45590068 + 0 NA intron (ENSMUSG00000032087.11, intron 3 of 32) protein_coding-intron (ENSMUSG00000032087.11, intron 3 of 32) 44901 ENSMUSG00000096202.1 ENSMUSG00000096202 ENSMUST00000179911 Gm22069 snRNA Interval_53674 chr14 60789885 60790699 + 0 NA intron (ENSMUSG00000021993.10, intron 3 of 15) protein_coding-intron (ENSMUSG00000021993.10, intron 3 of 18) 5710 ENSMUSG00000021993.10 ENSMUSG00000021993 ENSMUST00000223709 Mipep protein_coding Interval_145865 chr7 40799919 40800345 + 0 NA Intergenic Intergenic 20978 ENSMUSG00000108672.1 ENSMUSG00000108672 ENSMUST00000206420 Gm45008 TEC Interval_66772 chr16 37506345 37506710 + 0 NA Intergenic Intergenic 33249 ENSMUSG00000022828.10 ENSMUSG00000022828 ENSMUST00000130350 Gtf2e1 protein_coding Interval_83004 chr18 80304471 80306247 + 0 NA intron (ENSMUSG00000059852.7, intron 3 of 3) protein_coding-intron (ENSMUSG00000059852.7, intron 3 of 3) -1679 ENSMUSG00000102959.1 ENSMUSG00000102959 ENSMUST00000192763 Gm37015 TEC Interval_4641 chr1 75608641 75609515 + 0 NA Intergenic Intergenic -15576 ENSMUSG00000082528.1 ENSMUSG00000082528 ENSMUST00000120832 Gm15182 processed_pseudogene Interval_66982 chr16 38986621 38986959 + 0 NA intron (ENSMUSG00000022790.14, intron 1 of 6) protein_coding-intron (ENSMUSG00000022790.14, intron 1 of 6) 59581 ENSMUSG00000089607.1 ENSMUSG00000089607 ENSMUST00000158982 Gm22500 snRNA Interval_146331 chr7 45374590 45374925 + 0 NA Intergenic Intergenic -6155 ENSMUSG00000003872.9 ENSMUSG00000003872 ENSMUST00000209226 Lin7b protein_coding Interval_37678 chr12 71045895 71046119 + 0 NA intron (ENSMUSG00000048118.17, intron 8 of 14) protein_coding-intron (ENSMUSG00000048118.17, intron 9 of 23) -2334 ENSMUSG00000048118.17 ENSMUSG00000048118 ENSMUST00000135709 Arid4a protein_coding Interval_159696 chr8 97927365 97927639 + 0 NA Intergenic Intergenic 51348 ENSMUSG00000109645.1 ENSMUSG00000109645 ENSMUST00000210820 Gm45246 processed_pseudogene Interval_82136 chr18 67950358 67950699 + 0 NA intron (ENSMUSG00000024544.9, intron 1 of 5) protein_coding-intron (ENSMUSG00000024544.9, intron 1 of 5) 42900 ENSMUSG00000118326.1 ENSMUSG00000118326 ENSMUST00000235570 Gm8887 processed_pseudogene Interval_93927 chr2 79456490 79457195 + 0 NA promoter-TSS (ENSMUSG00000034701.9) protein_coding-promoter-TSS (ENSMUSG00000034701.9) -91 ENSMUSG00000034701.9 ENSMUSG00000034701 ENSMUST00000041099 Neurod1 protein_coding Interval_11587 chr1 183039970 183040513 + 0 NA Intergenic Intergenic -34365 ENSMUSG00000094807.2 ENSMUSG00000094807 ENSMUST00000178492 Gm24975 miRNA Interval_141323 chr6 127245803 127246258 + 0 NA Intergenic Intergenic 8614 ENSMUSG00000107013.1 ENSMUSG00000107013 ENSMUST00000202533 Gm43635 lincRNA Interval_69475 chr16 93784638 93785181 + 0 NA intron (ENSMUSG00000022946.10, intron 5 of 6) protein_coding-intron (ENSMUSG00000022946.10, intron 26 of 36) -7880 ENSMUSG00000022946.10 ENSMUSG00000022946 ENSMUST00000228423 Dop1b protein_coding Interval_73577 chr17 40662361 40662917 + 0 NA Intergenic Intergenic 30564 ENSMUSG00000093957.1 ENSMUSG00000093957 ENSMUST00000177574 Esp3 protein_coding Interval_41609 chr12 116919788 116920644 + 0 NA intron (ENSMUSG00000056553.14, intron 11 of 22) protein_coding-intron (ENSMUSG00000056553.14, intron 11 of 22) -67114 ENSMUSG00000113795.1 ENSMUSG00000113795 ENSMUST00000220994 Gm48119 processed_pseudogene Interval_143482 chr7 7209102 7209518 + 0 NA intron (ENSMUSG00000066838.7, intron 1 of 4) protein_coding-intron (ENSMUSG00000066838.7, intron 1 of 4) 688 ENSMUSG00000066838.7 ENSMUSG00000066838 ENSMUST00000074455 Zfp772 protein_coding Interval_503 chr1 6517286 6518642 + 0 NA intron (ENSMUSG00000033740.17, intron 2 of 22) protein_coding-intron (ENSMUSG00000033740.17, intron 2 of 22) -76668 ENSMUSG00000103845.1 ENSMUSG00000103845 ENSMUST00000194240 Gm19026 processed_pseudogene Interval_73160 chr17 35178428 35178994 + 0 NA Intergenic Intergenic -1824 ENSMUSG00000086076.1 ENSMUSG00000086076 ENSMUST00000134687 Ncr3-ps unprocessed_pseudogene Interval_141052 chr6 124686432 124687075 + 0 NA intron (ENSMUSG00000004270.13, intron 1 of 2) protein_coding-intron (ENSMUSG00000004270.13, intron 1 of 12) -15504 ENSMUSG00000004270.13 ENSMUSG00000004270 ENSMUST00000150597 Lpcat3 protein_coding Interval_45078 chr13 51904970 51906055 + 0 NA Intergenic Intergenic 58768 ENSMUSG00000021453.2 ENSMUSG00000021453 ENSMUST00000132480 Gadd45g protein_coding Interval_52970 chr14 52383103 52383538 + 0 NA Intergenic Intergenic -4152 ENSMUSG00000094140.2 ENSMUSG00000094140 ENSMUST00000071221 Olfr1512 protein_coding Interval_6431 chr1 108468395 108468788 + 0 NA Intergenic Intergenic 51514 ENSMUSG00000104478.1 ENSMUSG00000104478 ENSMUST00000194081 Gm38212 TEC Interval_172317 chrX 12926203 12928711 + 0 NA Intergenic Intergenic -9415 ENSMUSG00000083307.1 ENSMUSG00000083307 ENSMUST00000121924 AA414768 processed_pseudogene Interval_25469 chr11 48790250 48791558 + 0 NA Intergenic Intergenic -9428 ENSMUSG00000020372.15 ENSMUSG00000020372 ENSMUST00000136849 Rack1 protein_coding Interval_53668 chr14 60753046 60753731 + 0 NA intron (ENSMUSG00000021990.16, intron 6 of 9) protein_coding-intron (ENSMUSG00000021990.16, intron 9 of 12) -14746 ENSMUSG00000071347.3 ENSMUSG00000071347 ENSMUST00000025940 C1qtnf9 protein_coding Interval_121617 chr5 3942765 3944037 + 0 NA intron (ENSMUSG00000040407.18, intron 1 of 7) protein_coding-intron (ENSMUSG00000040407.18, intron 1 of 47) -45605 ENSMUSG00000105893.1 ENSMUSG00000105893 ENSMUST00000200591 Wdr46-ps processed_pseudogene Interval_86843 chr19 44310929 44312285 + 0 NA Intergenic Intergenic -2165 ENSMUSG00000117957.1 ENSMUSG00000117957 ENSMUST00000238052 Gm50334 lincRNA Interval_67287 chr16 45518558 45519667 + 0 NA intron (ENSMUSG00000116542.1, intron 4 of 4) protein_coding-intron (ENSMUSG00000116542.1, intron 4 of 4) 12938 ENSMUSG00000116542.1 ENSMUSG00000116542 ENSMUST00000232600 Gm17783 protein_coding Interval_45846 chr13 58522698 58523917 + 0 NA Intergenic Intergenic -22721 ENSMUSG00000114234.1 ENSMUSG00000114234 ENSMUST00000223882 Gm3131 processed_pseudogene Interval_155385 chr8 33117522 33118196 + 0 NA Intergenic Intergenic -61768 ENSMUSG00000110214.1 ENSMUSG00000110214 ENSMUST00000211548 Gm45587 lincRNA Interval_100608 chr2 170438548 170438783 + 0 NA Intergenic Intergenic 25154 ENSMUSG00000084067.3 ENSMUSG00000084067 ENSMUST00000120455 Gm14269 processed_pseudogene Interval_139843 chr6 110789508 110789797 + 0 NA intron (ENSMUSG00000056755.13, intron 2 of 9) protein_coding-intron (ENSMUSG00000056755.13, intron 1 of 10) 51302 ENSMUSG00000092603.1 ENSMUSG00000092603 ENSMUST00000174010 Gm20386 processed_pseudogene Interval_18412 chr10 85608864 85609181 + 0 NA intron (ENSMUSG00000020042.15, intron 4 of 16) protein_coding-intron (ENSMUSG00000020042.15, intron 4 of 9) -36181 ENSMUSG00000020042.15 ENSMUSG00000020042 ENSMUST00000145433 Btbd11 protein_coding Interval_1638 chr1 30666547 30667700 + 0 NA Intergenic Intergenic 52839 ENSMUSG00000053185.2 ENSMUSG00000053185 ENSMUST00000065469 Gm9898 lincRNA Interval_101637 chr3 8326714 8326985 + 0 NA promoter-TSS (ENSMUSG00000103921.1) processed_pseudogene-promoter-TSS (ENSMUSG00000103921.1) -682 ENSMUSG00000103921.1 ENSMUSG00000103921 ENSMUST00000195307 Gm5841 processed_pseudogene Interval_122317 chr5 21246676 21247003 + 0 NA intron (ENSMUSG00000039934.12, intron 13 of 26) protein_coding-intron (ENSMUSG00000039934.12, intron 13 of 30) 32782 ENSMUSG00000105275.1 ENSMUSG00000105275 ENSMUST00000199242 Gm43214 processed_pseudogene Interval_100924 chr2 173365313 173366803 + 0 NA Intergenic Intergenic -28508 ENSMUSG00000086114.1 ENSMUSG00000086114 ENSMUST00000147357 Gm14642 lincRNA Interval_170513 chr9 108439827 108440251 + 0 NA intron (ENSMUSG00000050641.7, intron 2 of 3) protein_coding-intron (ENSMUSG00000050641.7, intron 2 of 3) 3545 ENSMUSG00000050641.7 ENSMUSG00000050641 ENSMUST00000192955 BC048562 protein_coding Interval_139831 chr6 109591468 109592900 + 0 NA Intergenic Intergenic 41813 ENSMUSG00000108272.1 ENSMUSG00000108272 ENSMUST00000203532 Gm44161 processed_pseudogene Interval_130170 chr5 124724695 124725618 + 0 NA promoter-TSS (ENSMUSG00000038011.15) protein_coding-promoter-TSS (ENSMUSG00000038011.15) -77 ENSMUSG00000106082.4 ENSMUSG00000106082 ENSMUST00000199356 4930404A12Rik antisense Interval_73576 chr17 40648526 40648966 + 0 NA Intergenic Intergenic 16671 ENSMUSG00000093957.1 ENSMUSG00000093957 ENSMUST00000177574 Esp3 protein_coding Interval_47209 chr13 78105050 78105330 + 0 NA intron (ENSMUSG00000064138.14, intron 10 of 10) protein_coding-intron (ENSMUSG00000064138.14, intron 9 of 9) -7292 ENSMUSG00000114605.1 ENSMUSG00000114605 ENSMUST00000225844 C130051F05Rik TEC Interval_65792 chr16 28888410 28888925 + 0 NA intron (ENSMUSG00000051065.9, intron 1 of 1) protein_coding-intron (ENSMUSG00000051065.9, intron 1 of 1) -52300 ENSMUSG00000051065.9 ENSMUSG00000051065 ENSMUST00000232571 Mb21d2 protein_coding Interval_32031 chr11 104577691 104577933 + 0 NA intron (ENSMUSG00000061086.12, intron 2 of 6) protein_coding-intron (ENSMUSG00000061086.12, intron 3 of 8) -4227 ENSMUSG00000061086.12 ENSMUSG00000061086 ENSMUST00000136244 Myl4 protein_coding Interval_173981 chrX 121740340 121740572 + 0 NA Intergenic Intergenic 28367 ENSMUSG00000088539.1 ENSMUSG00000088539 ENSMUST00000157914 Gm23277 snoRNA Interval_100154 chr2 167374797 167375054 + 0 NA Intergenic Intergenic -61070 ENSMUSG00000017929.13 ENSMUSG00000017929 ENSMUST00000133557 B4galt5 protein_coding Interval_165052 chr9 44147196 44147541 + 0 NA exon (ENSMUSG00000034342.9, exon 16 of 16) protein_coding-exon (ENSMUSG00000034342.9, exon 16 of 16) 12707 ENSMUSG00000032135.15 ENSMUSG00000032135 ENSMUST00000132490 Mcam protein_coding Interval_166772 chr9 62529804 62530030 + 0 NA intron (ENSMUSG00000041729.15, intron 1 of 2) protein_coding-intron (ENSMUSG00000041729.15, intron 1 of 11) 14888 ENSMUSG00000084540.1 ENSMUSG00000084540 ENSMUST00000122591 n-R5s84 rRNA Interval_118593 chr4 132676105 132677507 + 0 NA intron (ENSMUSG00000028886.15, intron 6 of 16) protein_coding-intron (ENSMUSG00000028886.15, intron 4 of 14) 37760 ENSMUSG00000028886.15 ENSMUSG00000028886 ENSMUST00000130833 Eya3 protein_coding Interval_172234 chrX 11490960 11492165 + 0 NA Intergenic Intergenic -109792 ENSMUSG00000083492.1 ENSMUSG00000083492 ENSMUST00000121327 Gm14515 processed_pseudogene Interval_154406 chr8 15787660 15788966 + 0 NA Intergenic Intergenic -89351 ENSMUSG00000109757.1 ENSMUSG00000109757 ENSMUST00000211639 Gm7128 processed_pseudogene Interval_142310 chr6 140576213 140578055 + 0 NA promoter-TSS (ENSMUSG00000030231.11) protein_coding-promoter-TSS (ENSMUSG00000030231.11) 13566 ENSMUSG00000030231.11 ENSMUSG00000030231 ENSMUST00000204528 Plekha5 protein_coding Interval_76571 chr17 81262770 81263676 + 0 NA Intergenic Intergenic -16485 ENSMUSG00000117496.1 ENSMUSG00000117496 ENSMUST00000234904 Gm50042 processed_pseudogene Interval_131536 chr5 137859824 137860311 + 0 NA intron (ENSMUSG00000106478.1, intron 2 of 2) antisense-intron (ENSMUSG00000106478.1, intron 2 of 2) -2018 ENSMUSG00000066684.10 ENSMUSG00000066684 ENSMUST00000196195 Pilrb1 protein_coding Interval_152381 chr7 132610231 132611081 + 0 NA promoter-TSS (ENSMUSG00000030946.13) protein_coding-promoter-TSS (ENSMUSG00000030946.13) -10133 ENSMUSG00000030946.13 ENSMUSG00000030946 ENSMUST00000130672 Lhpp protein_coding Interval_30879 chr11 97029579 97030425 + 0 NA promoter-TSS (ENSMUSG00000020877.11) protein_coding-promoter-TSS (ENSMUSG00000020877.11) -132 ENSMUSG00000020877.11 ENSMUSG00000020877 ENSMUST00000153482 Scrn2 protein_coding Interval_126864 chr5 96050055 96050672 + 0 NA Intergenic Intergenic 76123 ENSMUSG00000107092.1 ENSMUSG00000107092 ENSMUST00000200970 Gm7993 processed_pseudogene Interval_132496 chr5 145368659 145368960 + 0 NA intron (ENSMUSG00000070419.11, intron 4 of 11) protein_coding-intron (ENSMUSG00000070419.11, intron 4 of 12) 23530 ENSMUSG00000070419.11 ENSMUSG00000070419 ENSMUST00000079268 Cyp3a57 protein_coding Interval_83347 chr18 84465547 84465716 + 0 NA intron (ENSMUSG00000048410.17, intron 3 of 8) protein_coding-intron (ENSMUSG00000048410.17, intron 2 of 2) -30696 ENSMUSG00000048410.17 ENSMUSG00000048410 ENSMUST00000182297 Zfp407 protein_coding Interval_149303 chr7 97297459 97298108 + 0 NA intron (ENSMUSG00000004508.6, intron 3 of 9) protein_coding-intron (ENSMUSG00000004508.6, intron 3 of 9) 18211 ENSMUSG00000035713.15 ENSMUSG00000035713 ENSMUST00000181354 Usp35 protein_coding Interval_105589 chr3 87949878 87950123 + 0 NA intron (ENSMUSG00000004885.5, intron 1 of 3) protein_coding-intron (ENSMUSG00000004885.5, intron 1 of 3) -2144 ENSMUSG00000004885.5 ENSMUSG00000004885 ENSMUST00000163040 Crabp2 protein_coding Interval_48237 chr13 97358577 97359338 + 0 NA Intergenic Intergenic -17277 ENSMUSG00000114425.1 ENSMUSG00000114425 ENSMUST00000223964 Gm33447 lincRNA Interval_75195 chr17 64558690 64560055 + 0 NA Intergenic Intergenic -3712 ENSMUSG00000073377.9 ENSMUSG00000073377 ENSMUST00000168379 AU016765 lincRNA Interval_144239 chr7 23715852 23716744 + 0 NA Intergenic Intergenic 15595 ENSMUSG00000115021.1 ENSMUSG00000115021 ENSMUST00000174055 Vmn1r173 protein_coding Interval_131412 chr5 137010148 137010469 + 0 NA Intergenic Intergenic 8306 ENSMUSG00000098131.1 ENSMUSG00000098131 ENSMUST00000182608 Gm26989 unprocessed_pseudogene Interval_15973 chr10 59787236 59788443 + 0 NA intron (ENSMUSG00000020111.15, intron 6 of 12) protein_coding-intron (ENSMUSG00000020111.15, intron 8 of 13) 12415 ENSMUSG00000091184.1 ENSMUSG00000091184 ENSMUST00000168284 Gm17059 antisense Interval_76173 chr17 75947763 75948724 + 0 NA Intergenic Intergenic 87220 ENSMUSG00000117539.1 ENSMUSG00000117539 ENSMUST00000234389 Gm4710 lincRNA Interval_162016 chr8 124450387 124450968 + 0 NA Intergenic Intergenic -11019 ENSMUSG00000050751.14 ENSMUSG00000050751 ENSMUST00000140126 Pgbd5 protein_coding Interval_53870 chr14 62977744 62978563 + 0 NA intron (ENSMUSG00000075574.2, intron 1 of 1) protein_coding-intron (ENSMUSG00000075574.2, intron 1 of 1) 4363 ENSMUSG00000114403.1 ENSMUSG00000114403 ENSMUST00000225378 Gm21021 processed_pseudogene Interval_148880 chr7 89758760 89759560 + 0 NA intron (ENSMUSG00000030621.17, intron 1 of 4) protein_coding-intron (ENSMUSG00000030621.17, intron 3 of 13) 2515 ENSMUSG00000089938.1 ENSMUSG00000089938 ENSMUST00000161734 Gm15744 unprocessed_pseudogene Interval_37301 chr12 64964907 64966807 + 0 NA promoter-TSS (ENSMUSG00000035614.11) protein_coding-promoter-TSS (ENSMUSG00000035614.11) -323 ENSMUSG00000020948.9 ENSMUSG00000020948 ENSMUST00000221957 Klhl28 protein_coding Interval_146669 chr7 49312649 49313280 + 0 NA intron (ENSMUSG00000052512.17, intron 1 of 6) protein_coding-intron (ENSMUSG00000052512.17, intron 1 of 37) -30510 ENSMUSG00000052512.17 ENSMUSG00000052512 ENSMUST00000183715 Nav2 protein_coding Interval_18529 chr10 87010475 87010688 + 0 NA intron (ENSMUSG00000089656.1, intron 1 of 2) antisense-intron (ENSMUSG00000089656.1, intron 1 of 2) 10284 ENSMUSG00000089666.1 ENSMUSG00000089666 ENSMUST00000160532 Gm16269 processed_pseudogene Interval_86566 chr19 41742584 41744269 + 0 NA promoter-TSS (ENSMUSG00000025020.11) protein_coding-promoter-TSS (ENSMUSG00000025020.11) 60 ENSMUSG00000025020.11 ENSMUSG00000025020 ENSMUST00000171586 Slit1 protein_coding Interval_9737 chr1 161509861 161510585 + 0 NA Intergenic Intergenic 15568 ENSMUSG00000066755.2 ENSMUSG00000066755 ENSMUST00000086084 Tnfsf18 protein_coding Interval_93911 chr2 78987248 78987422 + 0 NA intron (ENSMUSG00000102286.1, intron 1 of 4) TEC-intron (ENSMUSG00000102286.1, intron 1 of 4) 14663 ENSMUSG00000102286.1 ENSMUSG00000102286 ENSMUST00000193021 Gm37004 TEC Interval_172743 chrX 48202164 48202820 + 0 NA intron (ENSMUSG00000036985.12, intron 2 of 2) protein_coding-intron (ENSMUSG00000036985.12, intron 2 of 9) 6166 ENSMUSG00000036985.12 ENSMUSG00000036985 ENSMUST00000149416 Zdhhc9 protein_coding Interval_146468 chr7 46168290 46169594 + 0 NA intron (ENSMUSG00000040136.10, intron 4 of 9) protein_coding-intron (ENSMUSG00000040136.10, intron 4 of 38) 11091 ENSMUSG00000040136.10 ENSMUSG00000040136 ENSMUST00000210511 Abcc8 protein_coding Interval_79397 chr18 31651859 31652495 + 0 NA intron (ENSMUSG00000024260.14, intron 6 of 17) protein_coding-intron (ENSMUSG00000024260.14, intron 6 of 20) 17806 ENSMUSG00000024260.14 ENSMUSG00000024260 ENSMUST00000234772 Sap130 protein_coding Interval_3678 chr1 60736123 60736355 + 0 NA intron (ENSMUSG00000026012.2, intron 3 of 3) protein_coding-intron (ENSMUSG00000026012.2, intron 3 of 3) -10163 ENSMUSG00000026012.2 ENSMUSG00000026012 ENSMUST00000153207 Cd28 protein_coding Interval_36344 chr12 41687363 41687857 + 0 NA intron (ENSMUSG00000056899.10, intron 4 of 5) protein_coding-intron (ENSMUSG00000056899.10, intron 5 of 6) 3216 ENSMUSG00000113438.1 ENSMUSG00000113438 ENSMUST00000221651 Gm47369 processed_pseudogene Interval_140784 chr6 121338201 121338943 + 0 NA TTS (ENSMUSG00000030108.14) protein_coding-TTS (ENSMUSG00000030108.14) -12896 ENSMUSG00000078042.1 ENSMUSG00000078042 ENSMUST00000104848 Gm24855 miRNA Interval_121024 chr4 152285676 152287166 + 0 NA TTS (ENSMUSG00000028946.7) protein_coding-TTS (ENSMUSG00000028946.7) 2184 ENSMUSG00000028946.7 ENSMUSG00000028946 ENSMUST00000218045 Hes3 protein_coding Interval_69682 chr16 95466678 95467539 + 0 NA intron (ENSMUSG00000040732.20, intron 2 of 10) protein_coding-intron (ENSMUSG00000040732.20, intron 2 of 9) 63257 ENSMUSG00000040732.20 ENSMUSG00000040732 ENSMUST00000121809 Erg protein_coding Interval_119252 chr4 136456644 136456961 + 0 NA Intergenic Intergenic -5448 ENSMUSG00000066178.4 ENSMUSG00000066178 ENSMUST00000084593 6030445D17Rik lincRNA Interval_168572 chr9 83661303 83661577 + 0 NA Intergenic Intergenic 26085 ENSMUSG00000111820.1 ENSMUSG00000111820 ENSMUST00000214393 Gm36120 lincRNA Interval_67394 chr16 48297276 48298231 + 0 NA Intergenic Intergenic -6155 ENSMUSG00000072419.5 ENSMUSG00000072419 ENSMUST00000097175 Dppa2 protein_coding Interval_9512 chr1 158260275 158260518 + 0 NA intron (ENSMUSG00000004031.13, intron 4 of 7) protein_coding-intron (ENSMUSG00000004031.13, intron 4 of 7) 95833 ENSMUSG00000004031.13 ENSMUSG00000004031 ENSMUST00000192709 Brinp2 protein_coding Interval_143787 chr7 16301974 16302278 + 0 NA Intergenic Intergenic -6267 ENSMUSG00000002083.13 ENSMUSG00000002083 ENSMUST00000147267 Bbc3 protein_coding Interval_36720 chr12 52492388 52493561 + 0 NA Intergenic Intergenic -11042 ENSMUSG00000035133.9 ENSMUSG00000035133 ENSMUST00000110725 Arhgap5 protein_coding Interval_20783 chr10 120925878 120927372 + 0 NA intron (ENSMUSG00000048661.14, intron 10 of 12) protein_coding-intron (ENSMUSG00000048661.14, intron 11 of 13) -1561 ENSMUSG00000082936.1 ENSMUSG00000082936 ENSMUST00000118291 Gm16166 processed_pseudogene Interval_137174 chr6 69035721 69036639 + 0 NA Intergenic Intergenic 7325 ENSMUSG00000076541.3 ENSMUSG00000076541 ENSMUST00000103342 Igkv4-79 IG_V_gene Interval_72675 chr17 31492411 31493021 + 0 NA Intergenic Intergenic -5347 ENSMUSG00000118390.1 ENSMUSG00000118390 ENSMUST00000237599 Gm50102 TEC Interval_163753 chr9 25270016 25270214 + 0 NA intron (ENSMUSG00000001833.17, intron 3 of 12) protein_coding-intron (ENSMUSG00000001833.17, intron 3 of 13) 5360 ENSMUSG00000111004.1 ENSMUSG00000111004 ENSMUST00000214972 Gm48272 processed_pseudogene Interval_16472 chr10 63053206 63054850 + 0 NA promoter-TSS (ENSMUSG00000020072.15) protein_coding-promoter-TSS (ENSMUSG00000020072.15) -182 ENSMUSG00000020072.15 ENSMUSG00000020072 ENSMUST00000130531 Pbld2 protein_coding Interval_146236 chr7 44891579 44892928 + 0 NA promoter-TSS (ENSMUSG00000002968.9) protein_coding-promoter-TSS (ENSMUSG00000002968.9) -5044 ENSMUSG00000011658.16 ENSMUSG00000011658 ENSMUST00000207833 Fuz protein_coding Interval_163292 chr9 20644730 20645061 + 0 NA promoter-TSS (ENSMUSG00000066892.14) protein_coding-promoter-TSS (ENSMUSG00000066892.14) 74 ENSMUSG00000084786.9 ENSMUSG00000084786 ENSMUST00000161834 Ubl5 protein_coding Interval_84189 chr19 8625840 8626251 + 0 NA intron (ENSMUSG00000024650.5, intron 9 of 9) protein_coding-intron (ENSMUSG00000024650.5, intron 9 of 9) 8006 ENSMUSG00000024650.5 ENSMUSG00000024650 ENSMUST00000010250 Slc22a6 protein_coding Interval_3491 chr1 58897501 58898147 + 0 NA Intergenic Intergenic -5032 ENSMUSG00000099719.1 ENSMUSG00000099719 ENSMUST00000188624 Gm28802 unprocessed_pseudogene Interval_18842 chr10 91207230 91207881 + 0 NA TTS (ENSMUSG00000111544.1) lincRNA-TTS (ENSMUSG00000111544.1) 13064 ENSMUSG00000111544.1 ENSMUSG00000111544 ENSMUST00000216451 4930534H03Rik lincRNA Interval_108471 chr3 127486071 127487000 + 0 NA intron (ENSMUSG00000032826.19, intron 1 of 1) protein_coding-intron (ENSMUSG00000032826.19, intron 1 of 1) -5108 ENSMUSG00000106369.1 ENSMUSG00000106369 ENSMUST00000196541 Gm43355 transcribed_unprocessed_pseudogene Interval_85835 chr19 32252514 32252813 + 0 NA intron (ENSMUSG00000040451.18, intron 2 of 4) protein_coding-intron (ENSMUSG00000040451.18, intron 3 of 9) 24301 ENSMUSG00000040451.18 ENSMUSG00000040451 ENSMUST00000141252 Sgms1 protein_coding Interval_150849 chr7 115645957 115646168 + 0 NA intron (ENSMUSG00000051910.13, intron 7 of 11) protein_coding-intron (ENSMUSG00000051910.13, intron 7 of 16) 200089 ENSMUSG00000051910.13 ENSMUSG00000051910 ENSMUST00000206912 Sox6 protein_coding Interval_49129 chr13 108309086 108310096 + 0 NA exon (ENSMUSG00000114607.1, exon 1 of 1) processed_pseudogene-exon (ENSMUSG00000114607.1, exon 1 of 1) 1159 ENSMUSG00000114607.1 ENSMUSG00000114607 ENSMUST00000225465 Gm8990 processed_pseudogene Interval_51032 chr14 21675498 21675773 + 0 NA TTS (ENSMUSG00000063821.6) protein_coding-TTS (ENSMUSG00000063821.6) 27467 ENSMUSG00000063821.6 ENSMUSG00000063821 ENSMUST00000224735 Dupd1 protein_coding Interval_112361 chr4 40829024 40830333 + 0 NA intron (ENSMUSG00000028413.13, intron 1 of 4) protein_coding-intron (ENSMUSG00000028413.13, intron 1 of 5) 20460 ENSMUSG00000096377.1 ENSMUSG00000096377 ENSMUST00000177794 Mir5123 miRNA Interval_102340 chr3 22037637 22038655 + 0 NA Intergenic Intergenic 16949 ENSMUSG00000106527.1 ENSMUSG00000106527 ENSMUST00000200422 Gm43671 processed_pseudogene Interval_111328 chr4 19032267 19032672 + 0 NA intron (ENSMUSG00000073991.4, intron 4 of 9) protein_coding-intron (ENSMUSG00000073991.4, intron 4 of 9) 67905 ENSMUSG00000083005.1 ENSMUSG00000083005 ENSMUST00000118014 Gm12392 processed_pseudogene Interval_138518 chr6 88874051 88875467 + 0 NA promoter-TSS (ENSMUSG00000033152.13) protein_coding-promoter-TSS (ENSMUSG00000033152.13) -7896 ENSMUSG00000107432.1 ENSMUSG00000107432 ENSMUST00000204113 Gm36189 processed_pseudogene Interval_150912 chr7 116306652 116309707 + 0 NA promoter-TSS (ENSMUSG00000045659.18) protein_coding-promoter-TSS (ENSMUSG00000045659.18) 25078 ENSMUSG00000064741.1 ENSMUSG00000064741 ENSMUST00000082807 Snord14a snoRNA Interval_4179 chr1 71389096 71389448 + 0 NA intron (ENSMUSG00000050296.14, intron 2 of 2) protein_coding-intron (ENSMUSG00000050296.14, intron 2 of 52) -53486 ENSMUSG00000050296.14 ENSMUSG00000050296 ENSMUST00000189102 Abca12 protein_coding Interval_128961 chr5 116321130 116321378 + 0 NA Intergenic Intergenic 8894 ENSMUSG00000086715.1 ENSMUSG00000086715 ENSMUST00000128473 B230112J18Rik lincRNA Interval_110849 chr4 8954015 8955304 + 0 NA Intergenic Intergenic 13400 ENSMUSG00000083786.1 ENSMUSG00000083786 ENSMUST00000119493 Rps18-ps2 processed_pseudogene Interval_100552 chr2 170094142 170095078 + 0 NA Intergenic Intergenic 53493 ENSMUSG00000052056.14 ENSMUSG00000052056 ENSMUST00000149318 Zfp217 protein_coding Interval_154108 chr8 12759968 12760310 + 0 NA intron (ENSMUSG00000031441.15, intron 1 of 27) protein_coding-intron (ENSMUSG00000031441.15, intron 1 of 29) -41012 ENSMUSG00000074469.6 ENSMUSG00000074469 ENSMUST00000151188 Gm15348 lincRNA Interval_1586 chr1 28192723 28192935 + 0 NA Intergenic Intergenic 202919 ENSMUSG00000101372.1 ENSMUSG00000101372 ENSMUST00000189614 Gm19028 processed_pseudogene Interval_19123 chr10 94841936 94842132 + 0 NA intron (ENSMUSG00000074785.5, intron 1 of 3) protein_coding-intron (ENSMUSG00000074785.5, intron 14 of 30) -12488 ENSMUSG00000074785.5 ENSMUSG00000074785 ENSMUST00000180573 Plxnc1 protein_coding Interval_76360 chr17 79478732 79479310 + 0 NA Intergenic Intergenic 124322 ENSMUSG00000118651.1 ENSMUSG00000118651 ENSMUST00000239444 CT030740.1 antisense Interval_67887 chr16 58695954 58696205 + 0 NA intron (ENSMUSG00000022742.6, intron 1 of 1) protein_coding-intron (ENSMUSG00000022742.6, intron 1 of 1) 18240 ENSMUSG00000022742.6 ENSMUSG00000022742 ENSMUST00000231342 Cpox protein_coding Interval_36879 chr12 54900810 54901794 + 0 NA intron (ENSMUSG00000035021.13, intron 21 of 26) protein_coding-intron (ENSMUSG00000035021.13, intron 21 of 26) 29037 ENSMUSG00000035021.13 ENSMUSG00000035021 ENSMUST00000173529 Baz1a protein_coding Interval_17811 chr10 80208860 80209438 + 0 NA Intergenic Intergenic -25111 ENSMUSG00000020156.16 ENSMUSG00000020156 ENSMUST00000136791 Pwwp3a protein_coding Interval_30631 chr11 95575851 95576476 + 0 NA intron (ENSMUSG00000000120.6, intron 3 of 5) protein_coding-intron (ENSMUSG00000000120.6, intron 3 of 5) 11572 ENSMUSG00000000120.6 ENSMUSG00000000120 ENSMUST00000000122 Ngfr protein_coding Interval_90080 chr2 27770127 27770755 + 0 NA Intergenic Intergenic 45222 ENSMUSG00000015846.15 ENSMUSG00000015846 ENSMUST00000148756 Rxra protein_coding Interval_149502 chr7 99170992 99172494 + 0 NA intron (ENSMUSG00000030747.5, intron 1 of 5) protein_coding-intron (ENSMUSG00000030747.5, intron 1 of 7) 10976 ENSMUSG00000030747.5 ENSMUSG00000030747 ENSMUST00000207893 Dgat2 protein_coding Interval_116816 chr4 117414848 117416048 + 0 NA intron (ENSMUSG00000028677.19, intron 2 of 2) protein_coding-intron (ENSMUSG00000028677.19, intron 2 of 14) -30502 ENSMUSG00000086876.1 ENSMUSG00000086876 ENSMUST00000136115 Gm12828 antisense Interval_170178 chr9 105967578 105968324 + 0 NA Intergenic Intergenic -7308 ENSMUSG00000091345.9 ENSMUSG00000091345 ENSMUST00000189127 Col6a5 protein_coding Interval_26816 chr11 60810630 60811962 + 0 NA promoter-TSS (ENSMUSG00000020534.14) protein_coding-promoter-TSS (ENSMUSG00000020534.14) -4275 ENSMUSG00000020534.14 ENSMUSG00000020534 ENSMUST00000172659 Shmt1 protein_coding Interval_162491 chr9 3277859 3278126 + 0 NA Intergenic Intergenic -14467 ENSMUSG00000098373.1 ENSMUSG00000098373 ENSMUST00000184612 Gm27679 misc_RNA Interval_173608 chrX 100796873 100797174 + 0 NA intron (ENSMUSG00000000881.12, intron 2 of 11) protein_coding-intron (ENSMUSG00000000881.12, intron 10 of 18) 19738 ENSMUSG00000000881.12 ENSMUSG00000000881 ENSMUST00000146772 Dlg3 protein_coding Interval_104351 chr3 63919844 63920274 + 0 NA intron (ENSMUSG00000048581.12, intron 4 of 4) protein_coding-intron (ENSMUSG00000048581.12, intron 4 of 4) 9332 ENSMUSG00000048581.12 ENSMUSG00000048581 ENSMUST00000160983 E130311K13Rik protein_coding Interval_128061 chr5 110596037 110596247 + 0 NA exon (ENSMUSG00000033316.14, exon 5 of 11) protein_coding-exon (ENSMUSG00000033316.14, exon 5 of 11) -7379 ENSMUSG00000033316.14 ENSMUSG00000033316 ENSMUST00000165856 Galnt9 protein_coding Interval_150669 chr7 113206721 113208349 + 0 NA promoter-TSS (ENSMUSG00000055116.8) protein_coding-promoter-TSS (ENSMUSG00000055116.8) -27088 ENSMUSG00000055116.8 ENSMUSG00000055116 ENSMUST00000211547 Arntl protein_coding Interval_4397 chr1 73828731 73829168 + 0 NA intron (ENSMUSG00000101344.1, intron 2 of 7) lincRNA-intron (ENSMUSG00000101344.1, intron 2 of 7) 12968 ENSMUSG00000101344.1 ENSMUSG00000101344 ENSMUST00000188600 Gm29183 lincRNA Interval_169547 chr9 99039952 99040130 + 0 NA intron (ENSMUSG00000032462.14, intron 23 of 23) protein_coding-intron (ENSMUSG00000032462.14, intron 23 of 23) -4326 ENSMUSG00000044860.9 ENSMUSG00000044860 ENSMUST00000076730 Gm1123 protein_coding Interval_142214 chr6 138866417 138867450 + 0 NA Intergenic Intergenic -6809 ENSMUSG00000107686.1 ENSMUSG00000107686 ENSMUST00000203400 Gm9038 processed_pseudogene Interval_112340 chr4 40691122 40691679 + 0 NA intron (ENSMUSG00000028411.15, intron 5 of 7) protein_coding-intron (ENSMUSG00000028411.15, intron 5 of 7) 11316 ENSMUSG00000028411.15 ENSMUSG00000028411 ENSMUST00000155710 Aptx protein_coding Interval_34647 chr12 8337420 8337858 + 0 NA promoter-TSS (ENSMUSG00000111889.1) antisense-promoter-TSS (ENSMUSG00000111889.1) -922 ENSMUSG00000111889.1 ENSMUSG00000111889 ENSMUST00000217669 Gm48071 antisense Interval_37968 chr12 73489576 73490242 + 0 NA TTS (ENSMUSG00000113099.1) lincRNA-TTS (ENSMUSG00000113099.1) 18761 ENSMUSG00000113099.1 ENSMUSG00000113099 ENSMUST00000222678 Gm34016 lincRNA Interval_48024 chr13 95332476 95332804 + 0 NA promoter-TSS (ENSMUSG00000077380.1) snoRNA-promoter-TSS (ENSMUSG00000077380.1) 22 ENSMUSG00000077380.1 ENSMUSG00000077380 ENSMUST00000104192 Gm22661 snoRNA Interval_45904 chr13 59049051 59049771 + 0 NA intron (ENSMUSG00000055254.15, intron 14 of 17) protein_coding-intron (ENSMUSG00000055254.15, intron 14 of 17) 28885 ENSMUSG00000114896.1 ENSMUSG00000114896 ENSMUST00000224384 Gm34245 TEC Interval_25598 chr11 50130659 50131993 + 0 NA promoter-TSS (ENSMUSG00000036644.15) protein_coding-promoter-TSS (ENSMUSG00000036644.15) -3408 ENSMUSG00000084302.1 ENSMUSG00000084302 ENSMUST00000117756 Gm12194 processed_pseudogene Interval_88899 chr2 12385575 12386154 + 0 NA TTS (ENSMUSG00000026767.12) protein_coding-TTS (ENSMUSG00000026767.12) 6619 ENSMUSG00000104406.1 ENSMUSG00000104406 ENSMUST00000193349 Gm38014 TEC Interval_21063 chr10 125793854 125794042 + 0 NA Intergenic Intergenic -172286 ENSMUSG00000020105.9 ENSMUSG00000020105 ENSMUST00000219974 Lrig3 protein_coding Interval_112511 chr4 41698817 41699223 + 0 NA promoter-TSS (ENSMUSG00000073889.10) protein_coding-promoter-TSS (ENSMUSG00000073889.10) 14514 ENSMUSG00000036114.3 ENSMUSG00000036114 ENSMUST00000038434 Rpp25l protein_coding Interval_78735 chr18 19955418 19955795 + 0 NA Intergenic Intergenic 46349 ENSMUSG00000059898.9 ENSMUSG00000059898 ENSMUST00000223946 Dsc3 protein_coding Interval_56224 chr14 113650172 113650714 + 0 NA Intergenic Intergenic -159783 ENSMUSG00000086415.1 ENSMUSG00000086415 ENSMUST00000150617 Gm4487 processed_pseudogene Interval_121343 chr4 155121968 155122879 + 0 NA intron (ENSMUSG00000029049.14, intron 10 of 12) protein_coding-intron (ENSMUSG00000029049.14, intron 10 of 13) 35834 ENSMUSG00000029049.14 ENSMUSG00000029049 ENSMUST00000129415 Morn1 protein_coding Interval_143524 chr7 11918350 11918703 + 0 NA Intergenic Intergenic 2655 ENSMUSG00000109811.1 ENSMUSG00000109811 ENSMUST00000210908 Tpt1-ps4 processed_pseudogene Interval_111044 chr4 11463020 11463223 + 0 NA Intergenic Intergenic -22922 ENSMUSG00000040720.15 ENSMUSG00000040720 ENSMUST00000108307 Virma protein_coding Interval_98591 chr2 153441192 153441545 + 0 NA intron (ENSMUSG00000061411.12, intron 4 of 10) protein_coding-intron (ENSMUSG00000061411.12, intron 4 of 10) 27519 ENSMUSG00000082283.1 ENSMUSG00000082283 ENSMUST00000119815 Gm14472 processed_pseudogene Interval_50234 chr14 10935799 10936183 + 0 NA intron (ENSMUSG00000060579.13, intron 2 of 9) protein_coding-intron (ENSMUSG00000060579.13, intron 2 of 9) -155543 ENSMUSG00000114305.1 ENSMUSG00000114305 ENSMUST00000225136 Gm48437 TEC Interval_4389 chr1 73702454 73702705 + 0 NA intron (ENSMUSG00000100301.6, intron 6 of 8) lincRNA-intron (ENSMUSG00000100301.6, intron 6 of 8) 41368 ENSMUSG00000100301.6 ENSMUSG00000100301 ENSMUST00000189514 6030407O03Rik lincRNA Interval_135183 chr6 37347012 37347842 + 0 NA intron (ENSMUSG00000038648.5, intron 8 of 11) protein_coding-intron (ENSMUSG00000038648.5, intron 8 of 11) -10892 ENSMUSG00000038648.5 ENSMUSG00000038648 ENSMUST00000128534 Creb3l2 protein_coding Interval_149814 chr7 101789985 101790274 + 0 NA promoter-TSS (ENSMUSG00000110360.1) processed_pseudogene-promoter-TSS (ENSMUSG00000110360.1) -407 ENSMUSG00000110360.1 ENSMUSG00000110360 ENSMUST00000210465 Gm45380 processed_pseudogene Interval_92806 chr2 65579627 65580397 + 0 NA Intergenic Intergenic -55354 ENSMUSG00000057182.15 ENSMUSG00000057182 ENSMUST00000126837 Scn3a protein_coding Interval_36343 chr12 41682009 41682471 + 0 NA intron (ENSMUSG00000056899.10, intron 4 of 5) protein_coding-intron (ENSMUSG00000056899.10, intron 5 of 6) -2154 ENSMUSG00000113438.1 ENSMUSG00000113438 ENSMUST00000221651 Gm47369 processed_pseudogene Interval_36090 chr12 35518251 35519211 + 0 NA intron (ENSMUSG00000019256.17, intron 1 of 1) protein_coding-intron (ENSMUSG00000019256.17, intron 2 of 8) 8048 ENSMUSG00000019256.17 ENSMUSG00000019256 ENSMUST00000173414 Ahr protein_coding Interval_87422 chr19 49941393 49941851 + 0 NA Intergenic Intergenic 73267 ENSMUSG00000117697.1 ENSMUSG00000117697 ENSMUST00000236762 Siah1-ps1 processed_pseudogene Interval_105866 chr3 89821974 89822654 + 0 NA TTS (ENSMUSG00000106564.1) processed_pseudogene-TTS (ENSMUSG00000106564.1) 1316 ENSMUSG00000106564.1 ENSMUSG00000106564 ENSMUST00000199694 Gm8969 processed_pseudogene Interval_119502 chr4 137964028 137964694 + 0 NA exon (ENSMUSG00000057530.14, exon 20 of 20) protein_coding-exon (ENSMUSG00000057530.14, exon 20 of 20) -29152 ENSMUSG00000028760.16 ENSMUSG00000028760 ENSMUST00000148074 Eif4g3 protein_coding Interval_28 GL456211.1 151052 151707 + 0 NA NA NA NA NA Interval_40888 chr12 109112658 109113041 + 0 NA Intergenic Intergenic 14622 ENSMUSG00000113306.1 ENSMUSG00000113306 ENSMUST00000223357 Mif-ps7 processed_pseudogene Interval_158374 chr8 83159223 83160915 + 0 NA Intergenic Intergenic 6101 ENSMUSG00000074228.3 ENSMUSG00000074228 ENSMUST00000238241 Gm10645 TEC Interval_40793 chr12 108456952 108457209 + 0 NA intron (ENSMUSG00000058070.14, intron 1 of 20) protein_coding-intron (ENSMUSG00000058070.14, intron 1 of 21) -14773 ENSMUSG00000058070.14 ENSMUSG00000058070 ENSMUST00000123035 Eml1 protein_coding Interval_97329 chr2 134505323 134506680 + 0 NA intron (ENSMUSG00000027261.2, intron 4 of 7) protein_coding-intron (ENSMUSG00000027261.2, intron 4 of 7) 48306 ENSMUSG00000027261.2 ENSMUSG00000027261 ENSMUST00000140794 Hao1 protein_coding Interval_49849 chr13 117165281 117165609 + 0 NA Intergenic Intergenic 22339 ENSMUSG00000114964.1 ENSMUSG00000114964 ENSMUST00000225620 Gm18945 processed_pseudogene Interval_20895 chr10 121798036 121798255 + 0 NA intron (ENSMUSG00000020121.15, intron 3 of 6) protein_coding-intron (ENSMUSG00000020121.15, intron 18 of 21) 33913 ENSMUSG00000112596.1 ENSMUSG00000112596 ENSMUST00000218664 Gm48804 TEC Interval_29435 chr11 84001229 84001863 + 0 NA intron (ENSMUSG00000034940.15, intron 11 of 20) protein_coding-intron (ENSMUSG00000034940.15, intron 11 of 21) -17655 ENSMUSG00000034940.15 ENSMUSG00000034940 ENSMUST00000132887 Synrg protein_coding Interval_72186 chr17 28485113 28486942 + 0 NA promoter-TSS (ENSMUSG00000024222.17) protein_coding-promoter-TSS (ENSMUSG00000024222.17) -24932 ENSMUSG00000117294.1 ENSMUSG00000117294 ENSMUST00000233091 Gm49839 TEC Interval_49880 chr13 117567298 117567518 + 0 NA Intergenic Intergenic -34912 ENSMUSG00000021730.8 ENSMUSG00000021730 ENSMUST00000006991 Hcn1 protein_coding Interval_124267 chr5 43200352 43200624 + 0 NA intron (ENSMUSG00000085720.8, intron 1 of 5) antisense-intron (ENSMUSG00000085720.8, intron 1 of 7) 34497 ENSMUSG00000085720.8 ENSMUSG00000085720 ENSMUST00000140650 Gm7854 antisense Interval_7415 chr1 131137721 131139973 + 0 NA promoter-TSS (ENSMUSG00000016526.8) protein_coding-promoter-TSS (ENSMUSG00000016526.8) -602 ENSMUSG00000016526.8 ENSMUSG00000016526 ENSMUST00000189756 Dyrk3 protein_coding Interval_147900 chr7 75340958 75341156 + 0 NA Intergenic Intergenic -24998 ENSMUSG00000069196.6 ENSMUSG00000069196 ENSMUST00000091506 Gm10161 processed_pseudogene Interval_151647 chr7 125674679 125675482 + 0 NA intron (ENSMUSG00000032777.9, intron 10 of 22) protein_coding-intron (ENSMUSG00000032777.9, intron 10 of 36) -6088 ENSMUSG00000032777.9 ENSMUSG00000032777 ENSMUST00000206127 Gtf3c1 protein_coding Interval_122428 chr5 22539959 22540236 + 0 NA intron (ENSMUSG00000029012.11, intron 3 of 9) protein_coding-intron (ENSMUSG00000029012.11, intron 3 of 13) -5254 ENSMUSG00000096346.1 ENSMUSG00000096346 ENSMUST00000178586 Gm22887 snRNA Interval_45184 chr13 53015781 53015948 + 0 NA promoter-TSS (ENSMUSG00000113101.1) lincRNA-promoter-TSS (ENSMUSG00000113101.1) -338 ENSMUSG00000113101.1 ENSMUSG00000113101 ENSMUST00000222317 Gm33424 lincRNA Interval_18316 chr10 84844000 84844843 + 0 NA intron (ENSMUSG00000020037.15, intron 5 of 14) protein_coding-intron (ENSMUSG00000020037.15, intron 4 of 9) -33238 ENSMUSG00000089451.1 ENSMUSG00000089451 ENSMUST00000158826 Gm24226 snRNA Interval_45899 chr13 58965839 58966076 + 0 NA intron (ENSMUSG00000055254.15, intron 12 of 17) protein_coding-intron (ENSMUSG00000055254.15, intron 12 of 17) 112339 ENSMUSG00000114896.1 ENSMUSG00000114896 ENSMUST00000224384 Gm34245 TEC Interval_58068 chr15 27595113 27595724 + 0 NA TTS (ENSMUSG00000022265.7) protein_coding-TTS (ENSMUSG00000022265.7) 23924 ENSMUSG00000098416.1 ENSMUSG00000098416 ENSMUST00000184426 Mir7117 miRNA Interval_57484 chr15 11689200 11690088 + 0 NA Intergenic Intergenic 14059 ENSMUSG00000115585.1 ENSMUSG00000115585 ENSMUST00000228108 Gm41271 processed_transcript Interval_83553 chr18 89231254 89231646 + 0 NA intron (ENSMUSG00000034028.16, intron 3 of 6) protein_coding-intron (ENSMUSG00000034028.16, intron 3 of 6) 33968 ENSMUSG00000034028.16 ENSMUSG00000034028 ENSMUST00000236835 Cd226 protein_coding Interval_123840 chr5 35879120 35880077 + 0 NA intron (ENSMUSG00000029095.17, intron 3 of 3) protein_coding-intron (ENSMUSG00000029095.17, intron 19 of 19) 21704 ENSMUSG00000029095.17 ENSMUSG00000029095 ENSMUST00000153529 Ablim2 protein_coding Interval_113737 chr4 57927409 57928318 + 0 NA Intergenic Intergenic -11566 ENSMUSG00000052117.5 ENSMUSG00000052117 ENSMUST00000063816 D630039A03Rik protein_coding Interval_147150 chr7 63888191 63890005 + 0 NA exon (ENSMUSG00000052040.10, exon 2 of 2) protein_coding-exon (ENSMUSG00000052040.10, exon 2 of 2) -8876 ENSMUSG00000098708.7 ENSMUSG00000098708 ENSMUST00000184360 Gm27252 processed_transcript Interval_107766 chr3 113654290 113655182 + 0 NA Intergenic Intergenic -22552 ENSMUSG00000105836.1 ENSMUSG00000105836 ENSMUST00000195893 Gm17954 processed_pseudogene Interval_7576 chr1 132288193 132288772 + 0 NA Intergenic Intergenic 4029 ENSMUSG00000089808.3 ENSMUSG00000089808 ENSMUST00000159853 Gm7241 processed_pseudogene Interval_102836 chr3 31953673 31954310 + 0 NA promoter-TSS (ENSMUSG00000103539.1) TEC-promoter-TSS (ENSMUSG00000103539.1) -773 ENSMUSG00000103539.1 ENSMUSG00000103539 ENSMUST00000194517 Gm37834 TEC Interval_82763 chr18 76901968 76902209 + 0 NA Intergenic Intergenic -28038 ENSMUSG00000117732.1 ENSMUSG00000117732 ENSMUST00000142456 Gm50364 protein_coding Interval_16559 chr10 63660363 63660851 + 0 NA intron (ENSMUSG00000060843.11, intron 5 of 17) protein_coding-intron (ENSMUSG00000060843.11, intron 4 of 16) -160448 ENSMUSG00000060843.11 ENSMUSG00000060843 ENSMUST00000135474 Ctnna3 protein_coding Interval_159955 chr8 105393772 105395119 + 0 NA intron (ENSMUSG00000051648.13, intron 3 of 3) protein_coding-intron (ENSMUSG00000051648.13, intron 4 of 16) 19011 ENSMUSG00000051648.13 ENSMUSG00000051648 ENSMUST00000168888 Kctd19 protein_coding Interval_134392 chr6 28169995 28170436 + 0 NA Intergenic Intergenic -35830 ENSMUSG00000024211.15 ENSMUSG00000024211 ENSMUST00000202861 Grm8 protein_coding Interval_123991 chr5 37050741 37051115 + 0 NA promoter-TSS (ENSMUSG00000063646.18) protein_coding-promoter-TSS (ENSMUSG00000063646.18) -9282 ENSMUSG00000097686.1 ENSMUSG00000097686 ENSMUST00000180816 Gm26647 antisense Interval_109610 chr3 145131406 145131689 + 0 NA intron (ENSMUSG00000028256.16, intron 7 of 9) protein_coding-intron (ENSMUSG00000028256.16, intron 6 of 14) -17471 ENSMUSG00000028256.16 ENSMUSG00000028256 ENSMUST00000200353 Odf2l protein_coding Interval_174814 chrX 167332581 167332811 + 0 NA Intergenic Intergenic -2253 ENSMUSG00000044583.13 ENSMUSG00000044583 ENSMUST00000149507 Tlr7 protein_coding Interval_107476 chr3 107964050 107966199 + 0 NA intron (ENSMUSG00000004038.9, intron 7 of 7) protein_coding-intron (ENSMUSG00000004038.9, intron 7 of 7) 4159 ENSMUSG00000004038.9 ENSMUSG00000004038 ENSMUST00000004136 Gstm3 protein_coding Interval_66740 chr16 36885021 36885243 + 0 NA exon (ENSMUSG00000034243.17, exon 2 of 22) protein_coding-exon (ENSMUSG00000034243.17, exon 2 of 22) -9262 ENSMUSG00000116795.1 ENSMUSG00000116795 ENSMUST00000231790 Gm49600 TEC Interval_48212 chr13 97219841 97220212 + 0 NA Intergenic Intergenic -17051 ENSMUSG00000114583.1 ENSMUSG00000114583 ENSMUST00000225592 Gm48881 processed_pseudogene Interval_49379 chr13 111569660 111570197 + 0 NA Intergenic Intergenic -1375 ENSMUSG00000086870.1 ENSMUSG00000086870 ENSMUST00000126640 Gm15288 antisense Interval_160138 chr8 106665651 106666517 + 0 NA intron (ENSMUSG00000000303.12, intron 14 of 16) protein_coding-intron (ENSMUSG00000000303.12, intron 14 of 15) -17031 ENSMUSG00000041949.6 ENSMUSG00000041949 ENSMUST00000211979 Tango6 protein_coding Interval_114508 chr4 81668901 81669843 + 0 NA Intergenic Intergenic -27069 ENSMUSG00000083385.1 ENSMUSG00000083385 ENSMUST00000117951 Gm11411 processed_pseudogene Interval_107769 chr3 113733408 113733601 + 0 NA Intergenic Intergenic 4272 ENSMUSG00000106454.1 ENSMUSG00000106454 ENSMUST00000198542 Gm17775 processed_pseudogene Interval_60290 chr15 72476003 72477562 + 0 NA Intergenic Intergenic 14237 ENSMUSG00000095149.1 ENSMUSG00000095149 ENSMUST00000179578 Gm24390 snRNA Interval_8258 chr1 136768613 136769408 + 0 NA Intergenic Intergenic -11401 ENSMUSG00000096432.1 ENSMUSG00000096432 ENSMUST00000175316 Gm22132 miRNA Interval_72040 chr17 27678974 27679701 + 0 NA intron (ENSMUSG00000040276.15, intron 1 of 9) protein_coding-intron (ENSMUSG00000040276.15, intron 1 of 9) 23749 ENSMUSG00000040276.15 ENSMUSG00000040276 ENSMUST00000231854 Pacsin1 protein_coding Interval_15676 chr10 53435342 53436400 + 0 NA Intergenic Intergenic 25989 ENSMUSG00000112132.1 ENSMUSG00000112132 ENSMUST00000218737 Gm36229 lincRNA Interval_106760 chr3 100521568 100522246 + 0 NA intron (ENSMUSG00000053957.5, intron 2 of 2) lincRNA-intron (ENSMUSG00000053957.5, intron 2 of 2) 24478 ENSMUSG00000104943.1 ENSMUSG00000104943 ENSMUST00000199168 Gm42868 sense_intronic Interval_161926 chr8 123812446 123812649 + 0 NA intron (ENSMUSG00000019478.16, intron 1 of 7) protein_coding-intron (ENSMUSG00000019478.16, intron 1 of 6) -14782 ENSMUSG00000019478.16 ENSMUSG00000019478 ENSMUST00000212846 Rab4a protein_coding Interval_7808 chr1 133854753 133855193 + 0 NA Intergenic Intergenic 19784 ENSMUSG00000100830.1 ENSMUSG00000100830 ENSMUST00000190927 Gm28441 lincRNA Interval_70502 chr17 11081389 11081575 + 0 NA TTS (ENSMUSG00000100402.1) antisense-TTS (ENSMUSG00000100402.1) 7986 ENSMUSG00000100402.1 ENSMUSG00000100402 ENSMUST00000190466 Gm28505 antisense Interval_46336 chr13 64042088 64042601 + 0 NA Intergenic Intergenic 46857 ENSMUSG00000033122.14 ENSMUSG00000033122 ENSMUST00000222810 Hsd17b3 protein_coding Interval_2408 chr1 39039607 39040049 + 0 NA Intergenic Intergenic 17809 ENSMUSG00000104188.1 ENSMUSG00000104188 ENSMUST00000195476 Gm37821 lincRNA Interval_25916 chr11 52537117 52537378 + 0 NA Intergenic Intergenic -49937 ENSMUSG00000083129.1 ENSMUSG00000083129 ENSMUST00000118245 Gm12210 processed_pseudogene Interval_65706 chr16 25753799 25754065 + 0 NA intron (ENSMUSG00000022510.14, intron 1 of 13) protein_coding-intron (ENSMUSG00000022510.14, intron 1 of 12) 27236 ENSMUSG00000098103.1 ENSMUSG00000098103 ENSMUST00000182783 Gm27005 processed_pseudogene Interval_159842 chr8 104265137 104266182 + 0 NA TTS (ENSMUSG00000054400.16) protein_coding-TTS (ENSMUSG00000054400.16) 14715 ENSMUSG00000054400.16 ENSMUSG00000054400 ENSMUST00000212259 Cklf protein_coding Interval_166641 chr9 61504863 61505056 + 0 NA Intergenic Intergenic -4764 ENSMUSG00000111381.1 ENSMUSG00000111381 ENSMUST00000213400 Gm34424 transcribed_processed_pseudogene Interval_115298 chr4 95548843 95549166 + 0 NA Intergenic Intergenic -8516 ENSMUSG00000028573.18 ENSMUSG00000028573 ENSMUST00000142384 Fggy protein_coding Interval_80786 chr18 47054150 47054695 + 0 NA intron (ENSMUSG00000042705.9, intron 5 of 6) protein_coding-intron (ENSMUSG00000042705.9, intron 5 of 6) -57717 ENSMUSG00000117621.1 ENSMUSG00000117621 ENSMUST00000234633 Hspe1-rs1 protein_coding Interval_31199 chr11 98849329 98849602 + 0 NA promoter-TSS (ENSMUSG00000038020.5) protein_coding-promoter-TSS (ENSMUSG00000038020.5) -867 ENSMUSG00000038020.5 ENSMUSG00000038020 ENSMUST00000139889 Rapgefl1 protein_coding Interval_150755 chr7 114132442 114132794 + 0 NA Intergenic Intergenic -14854 ENSMUSG00000055723.6 ENSMUSG00000055723 ENSMUST00000210075 Rras2 protein_coding Interval_69243 chr16 91632067 91632335 + 0 NA intron (ENSMUSG00000022962.15, intron 11 of 21) protein_coding-intron (ENSMUSG00000022962.15, intron 11 of 21) -9184 ENSMUSG00000022962.15 ENSMUSG00000022962 ENSMUST00000231775 Gart protein_coding Interval_168476 chr9 81669826 81670235 + 0 NA Intergenic Intergenic -7582 ENSMUSG00000079225.3 ENSMUSG00000079225 ENSMUST00000183511 Gm9531 transcribed_processed_pseudogene Interval_61916 chr15 85216199 85217638 + 0 NA intron (ENSMUSG00000006369.14, intron 1 of 14) protein_coding-intron (ENSMUSG00000006369.14, intron 1 of 16) -46536 ENSMUSG00000006369.14 ENSMUSG00000006369 ENSMUST00000160798 Fbln1 protein_coding Interval_150726 chr7 113858461 113858725 + 0 NA intron (ENSMUSG00000038156.16, intron 3 of 5) protein_coding-intron (ENSMUSG00000038156.16, intron 3 of 15) 92419 ENSMUSG00000038156.16 ENSMUSG00000038156 ENSMUST00000084696 Spon1 protein_coding Interval_172039 chr9 123796174 123796435 + 0 NA intron (ENSMUSG00000025241.16, intron 16 of 17) protein_coding-intron (ENSMUSG00000025241.16, intron 17 of 18) -5015 ENSMUSG00000091661.2 ENSMUSG00000091661 ENSMUST00000172093 Gm17021 sense_overlapping Interval_155335 chr8 31618041 31618350 + 0 NA intron (ENSMUSG00000110329.1, intron 2 of 3) lincRNA-intron (ENSMUSG00000110329.1, intron 3 of 4) 43236 ENSMUSG00000084524.1 ENSMUSG00000084524 ENSMUST00000122575 Gm24184 misc_RNA Interval_130075 chr5 124095165 124096234 + 0 NA promoter-TSS (ENSMUSG00000029408.13) protein_coding-promoter-TSS (ENSMUSG00000029408.13) 16518 ENSMUSG00000085433.2 ENSMUSG00000085433 ENSMUST00000143062 Gm16001 lincRNA Interval_166815 chr9 62928635 62929447 + 0 NA intron (ENSMUSG00000032405.10, intron 2 of 4) protein_coding-intron (ENSMUSG00000032405.10, intron 2 of 13) 58883 ENSMUSG00000032405.10 ENSMUSG00000032405 ENSMUST00000215455 Pias1 protein_coding Interval_64046 chr16 6397101 6397889 + 0 NA intron (ENSMUSG00000008658.16, intron 1 of 14) protein_coding-intron (ENSMUSG00000008658.16, intron 1 of 14) 421910 ENSMUSG00000101481.1 ENSMUSG00000101481 ENSMUST00000190515 1700123O21Rik sense_intronic Interval_169011 chr9 90187019 90187362 + 0 NA intron (ENSMUSG00000032363.15, intron 11 of 23) protein_coding-intron (ENSMUSG00000032363.15, intron 11 of 23) 24112 ENSMUSG00000032363.15 ENSMUSG00000032363 ENSMUST00000124441 Adamts7 protein_coding Interval_84564 chr19 12765730 12766329 + 0 NA promoter-TSS (ENSMUSG00000079415.2) protein_coding-promoter-TSS (ENSMUSG00000079415.2) -397 ENSMUSG00000079415.2 ENSMUSG00000079415 ENSMUST00000112933 Cntf protein_coding Interval_11354 chr1 181172506 181172747 + 0 NA TTS (ENSMUSG00000038733.14) protein_coding-TTS (ENSMUSG00000038733.14) 27933 ENSMUSG00000062169.13 ENSMUSG00000062169 ENSMUST00000111057 Cnih4 protein_coding Interval_76910 chr17 84921462 84923279 + 0 NA intron (ENSMUSG00000097047.2, intron 2 of 3) bidirectional_promoter_lncRNA-intron (ENSMUSG00000097047.2, intron 2 of 3) -19801 ENSMUSG00000117451.1 ENSMUSG00000117451 ENSMUST00000234338 Gm49982 processed_pseudogene Interval_128144 chr5 111273486 111274157 + 0 NA intron (ENSMUSG00000033209.17, intron 14 of 22) protein_coding-intron (ENSMUSG00000033209.17, intron 15 of 23) 1273 ENSMUSG00000099130.1 ENSMUSG00000099130 ENSMUST00000183861 Gm27602 misc_RNA Interval_29378 chr11 83518112 83519260 + 0 NA intron (ENSMUSG00000018925.3, intron 4 of 14) protein_coding-intron (ENSMUSG00000018925.3, intron 4 of 14) -2470 ENSMUSG00000065307.1 ENSMUSG00000065307 ENSMUST00000083373 Gm23247 snRNA Interval_60373 chr15 73220271 73221178 + 0 NA intron (ENSMUSG00000022607.18, intron 30 of 34) protein_coding-intron (ENSMUSG00000022607.18, intron 27 of 31) -28822 ENSMUSG00000115693.1 ENSMUSG00000115693 ENSMUST00000228696 1700085D07Rik antisense Interval_86163 chr19 37202169 37202911 + 0 NA intron (ENSMUSG00000039652.16, intron 1 of 2) protein_coding-intron (ENSMUSG00000039652.16, intron 1 of 10) -5036 ENSMUSG00000023307.14 ENSMUSG00000023307 ENSMUST00000128530 Marchf5 protein_coding Interval_64130 chr16 8620170 8620703 + 0 NA TTS (ENSMUSG00000057880.12) protein_coding-TTS (ENSMUSG00000057880.12) 2834 ENSMUSG00000076039.1 ENSMUSG00000076039 ENSMUST00000102085 Gm22137 miRNA Interval_33380 chr11 116219850 116222905 + 0 NA exon (ENSMUSG00000034282.3, exon 22 of 22) protein_coding-exon (ENSMUSG00000034282.3, exon 22 of 22) 4891 ENSMUSG00000092300.7 ENSMUSG00000092300 ENSMUST00000173567 Cdk3 polymorphic_pseudogene Interval_95099 chr2 103874015 103874936 + 0 NA Intergenic Intergenic -13849 ENSMUSG00000083643.1 ENSMUSG00000083643 ENSMUST00000118451 Gm13876 processed_pseudogene Interval_106306 chr3 95270535 95271643 + 0 NA intron (ENSMUSG00000015711.8, intron 1 of 7) protein_coding-intron (ENSMUSG00000015711.8, intron 1 of 7) -2145 ENSMUSG00000015711.8 ENSMUSG00000015711 ENSMUST00000148959 Prune1 protein_coding Interval_38984 chr12 84284667 84285765 + 0 NA promoter-TSS (ENSMUSG00000072946.12) protein_coding-promoter-TSS (ENSMUSG00000072946.12) -183 ENSMUSG00000072946.12 ENSMUSG00000072946 ENSMUST00000123693 Ptgr2 protein_coding Interval_78431 chr18 12809386 12810059 + 0 NA intron (ENSMUSG00000044252.18, intron 1 of 11) protein_coding-intron (ENSMUSG00000044252.18, intron 17 of 27) 51483 ENSMUSG00000044252.18 ENSMUSG00000044252 ENSMUST00000142467 Osbpl1a protein_coding Interval_27488 chr11 68176415 68176812 + 0 NA intron (ENSMUSG00000020903.13, intron 6 of 6) protein_coding-intron (ENSMUSG00000020903.13, intron 7 of 7) 19540 ENSMUSG00000087242.2 ENSMUSG00000087242 ENSMUST00000152781 C78197 antisense Interval_95123 chr2 104059028 104059230 + 0 NA intron (ENSMUSG00000027180.12, intron 10 of 10) protein_coding-intron (ENSMUSG00000027180.12, intron 10 of 10) -6668 ENSMUSG00000078091.2 ENSMUSG00000078091 ENSMUST00000104891 Gm10912 TEC Interval_81138 chr18 54822819 54823101 + 0 NA exon (ENSMUSG00000118120.1, exon 2 of 6) lincRNA-exon (ENSMUSG00000118120.1, exon 2 of 6) 829 ENSMUSG00000118120.1 ENSMUSG00000118120 ENSMUST00000236611 Gm33732 lincRNA Interval_31415 chr11 100552274 100552856 + 0 NA intron (ENSMUSG00000006784.14, intron 5 of 9) protein_coding-intron (ENSMUSG00000006784.14, intron 5 of 10) 6855 ENSMUSG00000006784.14 ENSMUSG00000006784 ENSMUST00000127389 Ttc25 protein_coding Interval_140176 chr6 115011772 115012173 + 0 NA TTS (ENSMUSG00000030316.13) protein_coding-TTS (ENSMUSG00000030316.13) 25883 ENSMUSG00000030316.13 ENSMUSG00000030316 ENSMUST00000144445 Tamm41 protein_coding Interval_88090 chr19 58978098 58979602 + 0 NA intron (ENSMUSG00000041362.17, intron 14 of 14) protein_coding-intron (ENSMUSG00000041362.17, intron 16 of 16) 25673 ENSMUSG00000048029.10 ENSMUSG00000048029 ENSMUST00000201123 Eno4 protein_coding Interval_130445 chr5 127688281 127689451 + 0 NA intron (ENSMUSG00000049971.17, intron 9 of 10) protein_coding-intron (ENSMUSG00000049971.17, intron 8 of 11) 56604 ENSMUSG00000049971.17 ENSMUSG00000049971 ENSMUST00000134529 Glt1d1 protein_coding Interval_130668 chr5 129610919 129611446 + 0 NA TTS (ENSMUSG00000029436.9) protein_coding-TTS (ENSMUSG00000029436.9) 12689 ENSMUSG00000057244.6 ENSMUSG00000057244 ENSMUST00000079261 Gm6139 processed_pseudogene Interval_89727 chr2 25023696 25024276 + 0 NA intron (ENSMUSG00000036833.16, intron 20 of 21) protein_coding-intron (ENSMUSG00000036833.16, intron 20 of 34) 7467 ENSMUSG00000089513.1 ENSMUSG00000089513 ENSMUST00000158888 Gm24875 snRNA Interval_136820 chr6 60949332 60949539 + 0 NA intron (ENSMUSG00000054641.10, intron 1 of 7) protein_coding-intron (ENSMUSG00000054641.10, intron 1 of 7) 4957 ENSMUSG00000054641.10 ENSMUSG00000054641 ENSMUST00000204333 Mmrn1 protein_coding Interval_60018 chr15 63997268 63998671 + 0 NA promoter-TSS (ENSMUSG00000022378.14) protein_coding-promoter-TSS (ENSMUSG00000022378.14) -27979 ENSMUSG00000065936.1 ENSMUSG00000065936 ENSMUST00000084002 Gm25628 snRNA Interval_28035 chr11 72381082 72382015 + 0 NA Intergenic Intergenic -7208 ENSMUSG00000098658.1 ENSMUSG00000098658 ENSMUST00000183389 Mir6338 miRNA Interval_31534 chr11 101211491 101213071 + 0 NA intron (ENSMUSG00000006920.14, intron 6 of 20) protein_coding-intron (ENSMUSG00000006920.14, intron 6 of 14) -2876 ENSMUSG00000006920.14 ENSMUSG00000006920 ENSMUST00000151291 Ezh1 protein_coding Interval_155556 chr8 34397385 34397921 + 0 NA Intergenic Intergenic -11825 ENSMUSG00000110178.1 ENSMUSG00000110178 ENSMUST00000211696 Gm33831 lincRNA Interval_169663 chr9 99904524 99904986 + 0 NA Intergenic Intergenic -29100 ENSMUSG00000053747.9 ENSMUSG00000053747 ENSMUST00000183065 Sox14 protein_coding Interval_112068 chr4 34086929 34087834 + 0 NA Intergenic Intergenic 1255 ENSMUSG00000087841.1 ENSMUSG00000087841 ENSMUST00000157216 Gm25623 snRNA Interval_165646 chr9 50646333 50647421 + 0 NA promoter-TSS (ENSMUSG00000000168.9) protein_coding-promoter-TSS (ENSMUSG00000000168.9) 3018 ENSMUSG00000000168.9 ENSMUSG00000000168 ENSMUST00000155417 Dlat protein_coding Interval_7595 chr1 132409929 132410118 + 0 NA Intergenic Intergenic 28894 ENSMUSG00000090079.1 ENSMUSG00000090079 ENSMUST00000159257 Gm15849 antisense Interval_96862 chr2 129081090 129081313 + 0 NA intron (ENSMUSG00000027394.13, intron 1 of 3) protein_coding-intron (ENSMUSG00000027394.13, intron 3 of 6) 15216 ENSMUSG00000027394.13 ENSMUSG00000027394 ENSMUST00000144120 Ttl protein_coding Interval_2851 chr1 46449632 46450480 + 0 NA intron (ENSMUSG00000101337.6, intron 3 of 64) protein_coding-intron (ENSMUSG00000101337.6, intron 3 of 64) 35554 ENSMUSG00000101262.1 ENSMUSG00000101262 ENSMUST00000188705 Gm8326 processed_pseudogene Interval_46691 chr13 69263683 69264009 + 0 NA Intergenic Intergenic -81809 ENSMUSG00000098227.1 ENSMUSG00000098227 ENSMUST00000182847 Gm4812 processed_pseudogene Interval_107876 chr3 116506463 116508533 + 0 NA intron (ENSMUSG00000000339.14, intron 1 of 6) protein_coding-intron (ENSMUSG00000000339.14, intron 2 of 10) 567 ENSMUSG00000000339.14 ENSMUSG00000000339 ENSMUST00000143425 Rtca protein_coding Interval_95874 chr2 117652317 117652934 + 0 NA Intergenic Intergenic 151039 ENSMUSG00000101394.1 ENSMUSG00000101394 ENSMUST00000191321 Gm28183 lincRNA Interval_119109 chr4 135603941 135604603 + 0 NA Intergenic Intergenic 20524 ENSMUSG00000088179.1 ENSMUSG00000088179 ENSMUST00000157554 Gm23106 snRNA Interval_99834 chr2 165201705 165202722 + 0 NA intron (ENSMUSG00000053166.14, intron 1 of 11) protein_coding-intron (ENSMUSG00000053166.14, intron 1 of 11) -20754 ENSMUSG00000053166.14 ENSMUSG00000053166 ENSMUST00000138643 Cdh22 protein_coding Interval_139164 chr6 96595202 96596237 + 0 NA intron (ENSMUSG00000059187.12, intron 3 of 4) protein_coding-intron (ENSMUSG00000059187.12, intron 2 of 3) -34855 ENSMUSG00000077598.1 ENSMUSG00000077598 ENSMUST00000104410 Gm26011 snRNA Interval_33172 chr11 114948533 114949074 + 0 NA Intergenic Intergenic -14417 ENSMUSG00000063193.9 ENSMUSG00000063193 ENSMUST00000126655 Cd300lb protein_coding Interval_153249 chr7 142897624 142898490 + 0 NA exon (ENSMUSG00000000214.11, exon 2 of 13) protein_coding-exon (ENSMUSG00000000214.11, exon 2 of 13) 33063 ENSMUSG00000000214.11 ENSMUSG00000000214 ENSMUST00000140344 Th protein_coding Interval_17815 chr10 80240918 80241445 + 0 NA promoter-TSS (ENSMUSG00000020156.16) protein_coding-promoter-TSS (ENSMUSG00000020156.16) 6921 ENSMUSG00000020156.16 ENSMUSG00000020156 ENSMUST00000136791 Pwwp3a protein_coding Interval_133376 chr6 4255081 4255678 + 0 NA Intergenic Intergenic -1045 ENSMUSG00000108139.1 ENSMUSG00000108139 ENSMUST00000204376 Gm44055 processed_pseudogene Interval_78258 chr18 10868396 10869023 + 0 NA Intergenic Intergenic 9029 ENSMUSG00000117593.1 ENSMUSG00000117593 ENSMUST00000235066 Gm18764 processed_pseudogene Interval_43561 chr13 33520003 33520232 + 0 NA intron (ENSMUSG00000081903.1, intron 2 of 3) unprocessed_pseudogene-intron (ENSMUSG00000081903.1, intron 2 of 3) 11842 ENSMUSG00000081288.1 ENSMUSG00000081288 ENSMUST00000117761 Gm11386 processed_pseudogene Interval_96915 chr2 129438915 129439281 + 0 NA Intergenic Intergenic -59702 ENSMUSG00000081888.1 ENSMUSG00000081888 ENSMUST00000122326 Spcs2-ps unprocessed_pseudogene Interval_143163 chr7 4057259 4058261 + 0 NA intron (ENSMUSG00000055541.17, intron 1 of 5) protein_coding-intron (ENSMUSG00000055541.17, intron 1 of 6) -30712 ENSMUSG00000055541.17 ENSMUSG00000055541 ENSMUST00000119711 Lair1 protein_coding Interval_57906 chr15 25305520 25306695 + 0 NA intron (ENSMUSG00000115355.1, intron 2 of 2) lincRNA-intron (ENSMUSG00000115355.1, intron 2 of 4) 26541 ENSMUSG00000115355.1 ENSMUSG00000115355 ENSMUST00000228450 4930445E18Rik lincRNA Interval_70067 chr17 5110380 5110700 + 0 NA TTS (ENSMUSG00000081783.2) processed_pseudogene-TTS (ENSMUSG00000081783.2) 1570 ENSMUSG00000081783.2 ENSMUSG00000081783 ENSMUST00000122283 Gm15599 processed_pseudogene Interval_101703 chr3 9033613 9034880 + 0 NA Intergenic Intergenic 13246 ENSMUSG00000103461.1 ENSMUSG00000103461 ENSMUST00000193974 Gm37616 processed_pseudogene Interval_147746 chr7 73331720 73331989 + 0 NA intron (ENSMUSG00000097756.2, intron 1 of 1) antisense-intron (ENSMUSG00000097756.2, intron 1 of 1) 21324 ENSMUSG00000108530.1 ENSMUSG00000108530 ENSMUST00000205600 4930429H19Rik lincRNA Interval_82588 chr18 75322231 75322596 + 0 NA Intergenic Intergenic -25096 ENSMUSG00000102047.1 ENSMUSG00000102047 ENSMUST00000186356 2010010A06Rik transcribed_processed_pseudogene Interval_155733 chr8 36569887 36570354 + 0 NA TTS (ENSMUSG00000031523.16) protein_coding-TTS (ENSMUSG00000031523.16) 80929 ENSMUSG00000039620.17 ENSMUSG00000039620 ENSMUST00000125492 Trmt9b protein_coding Interval_31934 chr11 103941078 103941542 + 0 NA intron (ENSMUSG00000034187.18, intron 1 of 8) protein_coding-intron (ENSMUSG00000034187.18, intron 1 of 20) -38279 ENSMUSG00000062421.13 ENSMUSG00000062421 ENSMUST00000154089 Arf2 protein_coding Interval_12215 chr1 190900811 190901302 + 0 NA intron (ENSMUSG00000089872.10, intron 1 of 8) protein_coding-intron (ENSMUSG00000089872.10, intron 2 of 14) -1339 ENSMUSG00000089872.10 ENSMUSG00000089872 ENSMUST00000159066 Rps6kc1 protein_coding Interval_42057 chr13 7006891 7008350 + 0 NA TTS (ENSMUSG00000114017.1) lincRNA-TTS (ENSMUSG00000114017.1) 68696 ENSMUSG00000114017.1 ENSMUSG00000114017 ENSMUST00000222208 Gm40662 lincRNA Interval_28714 chr11 77884122 77885893 + 0 NA promoter-TSS (ENSMUSG00000017453.4) protein_coding-promoter-TSS (ENSMUSG00000017453.4) -463 ENSMUSG00000017453.4 ENSMUSG00000017453 ENSMUST00000155401 Pipox protein_coding Interval_36767 chr12 53387139 53387329 + 0 NA intron (ENSMUSG00000021010.9, intron 2 of 11) protein_coding-intron (ENSMUSG00000021010.9, intron 2 of 11) -77388 ENSMUSG00000113179.1 ENSMUSG00000113179 ENSMUST00000221214 1700030L22Rik antisense Interval_8805 chr1 151293279 151294336 + 0 NA Intergenic Intergenic -32893 ENSMUSG00000088498.1 ENSMUSG00000088498 ENSMUST00000157873 Gm24402 snRNA Interval_77834 chr18 4313910 4315401 + 0 NA Intergenic Intergenic -20173 ENSMUSG00000117482.1 ENSMUSG00000117482 ENSMUST00000234061 Gm7400 processed_pseudogene Interval_174671 chrX 162783503 162783886 + 0 NA intron (ENSMUSG00000038344.14, intron 6 of 7) protein_coding-intron (ENSMUSG00000038344.14, intron 8 of 9) 9116 ENSMUSG00000031353.13 ENSMUSG00000031353 ENSMUST00000143681 Rbbp7 protein_coding Interval_108924 chr3 133372431 133373379 + 0 NA exon (ENSMUSG00000028013.16, exon 1 of 1) protein_coding-exon (ENSMUSG00000028013.16, exon 1 of 1) 51437 ENSMUSG00000028013.16 ENSMUSG00000028013 ENSMUST00000196807 Ppa2 protein_coding Interval_54764 chr14 74867394 74867872 + 0 NA intron (ENSMUSG00000068015.8, intron 1 of 18) protein_coding-intron (ENSMUSG00000068015.8, intron 1 of 19) -58812 ENSMUSG00000115002.1 ENSMUSG00000115002 ENSMUST00000227773 Gm10847 antisense Interval_159126 chr8 90861402 90862526 + 0 NA intron (ENSMUSG00000056608.14, intron 2 of 39) protein_coding-intron (ENSMUSG00000056608.14, intron 2 of 39) -12118 ENSMUSG00000110166.1 ENSMUSG00000110166 ENSMUST00000209775 Gm45641 antisense Interval_64549 chr16 13224037 13224309 + 0 NA Intergenic Intergenic 91782 ENSMUSG00000022545.13 ENSMUSG00000022545 ENSMUST00000156393 Ercc4 protein_coding Interval_57192 chr15 7279134 7281803 + 0 NA intron (ENSMUSG00000042961.13, intron 6 of 15) protein_coding-intron (ENSMUSG00000042961.13, intron 6 of 21) -25700 ENSMUSG00000042961.13 ENSMUSG00000042961 ENSMUST00000159726 Egflam protein_coding Interval_84234 chr19 8928742 8930404 + 0 NA promoter-TSS (ENSMUSG00000071647.5) protein_coding-promoter-TSS (ENSMUSG00000071647.5) -217 ENSMUSG00000071648.4 ENSMUSG00000071648 ENSMUST00000096242 Rom1 protein_coding Interval_170097 chr9 104410340 104410700 + 0 NA Intergenic Intergenic -15593 ENSMUSG00000089406.1 ENSMUSG00000089406 ENSMUST00000158781 Mir2136 miRNA Interval_133208 chr5 150563469 150564245 + 0 NA exon (ENSMUSG00000107178.1, exon 1 of 1) sense_intronic-exon (ENSMUSG00000107178.1, exon 1 of 1) 1546 ENSMUSG00000107178.1 ENSMUSG00000107178 ENSMUST00000201648 Gm42531 sense_intronic Interval_24321 chr11 32342580 32343518 + 0 NA Intergenic Intergenic -4771 ENSMUSG00000040711.8 ENSMUSG00000040711 ENSMUST00000138771 Sh3pxd2b protein_coding Interval_128394 chr5 113099305 113100511 + 0 NA promoter-TSS (ENSMUSG00000106541.1) TEC-promoter-TSS (ENSMUSG00000106541.1) -608 ENSMUSG00000106541.1 ENSMUSG00000106541 ENSMUST00000197597 Gm43246 TEC Interval_95621 chr2 112942964 112943571 + 0 NA intron (ENSMUSG00000057378.15, intron 10 of 103) protein_coding-intron (ENSMUSG00000057378.15, intron 10 of 102) -286719 ENSMUSG00000057378.15 ENSMUSG00000057378 ENSMUST00000208135 Ryr3 protein_coding Interval_80510 chr18 43144723 43145043 + 0 NA intron (ENSMUSG00000117792.1, intron 1 of 9) processed_transcript-intron (ENSMUSG00000117792.1, intron 1 of 9) -26276 ENSMUSG00000048188.6 ENSMUSG00000048188 ENSMUST00000062242 Gm8181 processed_pseudogene Interval_169473 chr9 97922817 97923450 + 0 NA intron (ENSMUSG00000032452.12, intron 1 of 16) protein_coding-intron (ENSMUSG00000032452.12, intron 1 of 17) 7022 ENSMUSG00000104462.1 ENSMUSG00000104462 ENSMUST00000191863 Gm37661 TEC Interval_132816 chr5 148075004 148075257 + 0 NA intron (ENSMUSG00000029651.16, intron 1 of 14) protein_coding-intron (ENSMUSG00000029651.16, intron 1 of 14) 109247 ENSMUSG00000066554.6 ENSMUSG00000066554 ENSMUST00000150411 Gm10167 processed_pseudogene Interval_116781 chr4 117267405 117268321 + 0 NA TTS (ENSMUSG00000048772.15) protein_coding-TTS (ENSMUSG00000048772.15) 5920 ENSMUSG00000028677.19 ENSMUSG00000028677 ENSMUST00000123222 Rnf220 protein_coding Interval_100363 chr2 168653628 168654092 + 0 NA intron (ENSMUSG00000027546.15, intron 16 of 27) protein_coding-intron (ENSMUSG00000027546.15, intron 16 of 27) -13101 ENSMUSG00000105496.1 ENSMUSG00000105496 ENSMUST00000200215 Mir7004 miRNA Interval_165276 chr9 45974470 45974730 + 0 NA TTS (ENSMUSG00000003131.7) protein_coding-TTS (ENSMUSG00000003131.7) 10183 ENSMUSG00000003131.7 ENSMUSG00000003131 ENSMUST00000214996 Pafah1b2 protein_coding Interval_143405 chr7 6434578 6435967 + 0 NA intron (ENSMUSG00000045929.8, intron 3 of 4) protein_coding-intron (ENSMUSG00000045929.8, intron 3 of 4) -3416 ENSMUSG00000090824.2 ENSMUSG00000090824 ENSMUST00000168341 Olfr1344 protein_coding Interval_148499 chr7 81858153 81859738 + 0 NA promoter-TSS (ENSMUSG00000038623.9) protein_coding-promoter-TSS (ENSMUSG00000038623.9) -3151 ENSMUSG00000066378.3 ENSMUSG00000066378 ENSMUST00000085094 Gm10160 protein_coding Interval_103223 chr3 37153332 37154131 + 0 NA Intergenic Intergenic -27772 ENSMUSG00000027720.7 ENSMUSG00000027720 ENSMUST00000029275 Il2 protein_coding Interval_99768 chr2 164788392 164788995 + 0 NA intron (ENSMUSG00000050373.13, intron 1 of 1) protein_coding-intron (ENSMUSG00000050373.13, intron 2 of 2) -2959 ENSMUSG00000050373.13 ENSMUSG00000050373 ENSMUST00000174342 Snx21 protein_coding Interval_123418 chr5 32392531 32392745 + 0 NA intron (ENSMUSG00000107036.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000107036.1, intron 1 of 1) 668 ENSMUSG00000107036.1 ENSMUSG00000107036 ENSMUST00000202171 Gm7596 lincRNA Interval_115556 chr4 100765240 100765522 + 0 NA Intergenic Intergenic 184103 ENSMUSG00000082601.1 ENSMUSG00000082601 ENSMUST00000118145 Gm12700 processed_pseudogene Interval_47999 chr13 94975960 94977059 + 0 NA promoter-TSS (ENSMUSG00000042015.17) protein_coding-promoter-TSS (ENSMUSG00000042015.17) -25849 ENSMUSG00000113871.1 ENSMUSG00000113871 ENSMUST00000221950 Gm48349 processed_pseudogene Interval_145283 chr7 31132711 31132932 + 0 NA TTS (ENSMUSG00000001248.15) protein_coding-TTS (ENSMUSG00000001248.15) 1447 ENSMUSG00000001248.15 ENSMUSG00000001248 ENSMUST00000186723 Gramd1a protein_coding Interval_111321 chr4 18695369 18696949 + 0 NA intron (ENSMUSG00000087402.1, intron 3 of 10) processed_transcript-intron (ENSMUSG00000087402.1, intron 3 of 10) -12589 ENSMUSG00000089578.1 ENSMUSG00000089578 ENSMUST00000158953 Gm25971 misc_RNA Interval_133845 chr6 13257527 13257842 + 0 NA Intergenic Intergenic -6061 ENSMUSG00000118525.1 ENSMUSG00000118525 ENSMUST00000238854 AC121573.1 processed_pseudogene Interval_107308 chr3 105686572 105688131 + 0 NA promoter-TSS (ENSMUSG00000027905.15) protein_coding-promoter-TSS (ENSMUSG00000027905.15) 101 ENSMUSG00000027905.15 ENSMUSG00000027905 ENSMUST00000132008 Ddx20 protein_coding Interval_123056 chr5 29309122 29309403 + 0 NA intron (ENSMUSG00000010721.15, intron 4 of 16) protein_coding-intron (ENSMUSG00000010721.15, intron 5 of 16) 27584 ENSMUSG00000093302.1 ENSMUSG00000093302 ENSMUST00000175561 Gm23801 miRNA Interval_46478 chr13 66457766 66458497 + 0 NA Intergenic Intergenic -2777 ENSMUSG00000114343.1 ENSMUSG00000114343 ENSMUST00000225113 Gm48322 processed_pseudogene Interval_152366 chr7 132441856 132442946 + 0 NA intron (ENSMUSG00000030849.18, intron 2 of 6) protein_coding-intron (ENSMUSG00000030849.18, intron 2 of 6) 22371 ENSMUSG00000108870.1 ENSMUSG00000108870 ENSMUST00000207259 Gm44893 lincRNA Interval_676 chr1 9788784 9788998 + 0 NA intron (ENSMUSG00000097893.8, intron 1 of 2) antisense-intron (ENSMUSG00000097893.8, intron 5 of 6) 13662 ENSMUSG00000046334.4 ENSMUSG00000046334 ENSMUST00000063059 Gm6195 processed_pseudogene Interval_148578 chr7 82792988 82795120 + 0 NA Intergenic Intergenic -38410 ENSMUSG00000086690.1 ENSMUSG00000086690 ENSMUST00000144828 4933406J10Rik antisense Interval_128939 chr5 116208605 116208915 + 0 NA intron (ENSMUSG00000043913.14, intron 2 of 5) protein_coding-intron (ENSMUSG00000043913.14, intron 2 of 13) -34946 ENSMUSG00000086122.1 ENSMUSG00000086122 ENSMUST00000156169 Gm14507 antisense Interval_48219 chr13 97248500 97250355 + 0 NA intron (ENSMUSG00000041773.8, intron 2 of 2) protein_coding-intron (ENSMUSG00000041773.8, intron 2 of 2) 8322 ENSMUSG00000041773.8 ENSMUSG00000041773 ENSMUST00000041623 Enc1 protein_coding Interval_134373 chr6 27249561 27249884 + 0 NA Intergenic Intergenic 194231 ENSMUSG00000107377.1 ENSMUSG00000107377 ENSMUST00000202562 Gm42801 TEC Interval_129524 chr5 120706418 120706973 + 0 NA promoter-TSS (ENSMUSG00000029603.15) protein_coding-promoter-TSS (ENSMUSG00000029603.15) -24616 ENSMUSG00000029603.15 ENSMUSG00000029603 ENSMUST00000124079 Dtx1 protein_coding Interval_168983 chr9 90024544 90024791 + 0 NA intron (ENSMUSG00000032356.12, intron 26 of 26) protein_coding-intron (ENSMUSG00000032356.12, intron 26 of 26) -6640 ENSMUSG00000088976.1 ENSMUSG00000088976 ENSMUST00000158351 Gm23759 misc_RNA Interval_156262 chr8 46616688 46617963 + 0 NA promoter-TSS (ENSMUSG00000038225.15) protein_coding-promoter-TSS (ENSMUSG00000038225.15) 34 ENSMUSG00000031628.9 ENSMUSG00000031628 ENSMUST00000210534 Casp3 protein_coding Interval_80465 chr18 42398700 42401948 + 0 NA Intergenic Intergenic 5249 ENSMUSG00000024497.4 ENSMUSG00000024497 ENSMUST00000237247 Pou4f3 protein_coding Interval_147728 chr7 73063308 73064131 + 0 NA Intergenic Intergenic -25704 ENSMUSG00000108329.1 ENSMUSG00000108329 ENSMUST00000205307 Gm44725 lincRNA Interval_79815 chr18 35271922 35272463 + 0 NA intron (ENSMUSG00000117876.1, intron 2 of 2) protein_coding-intron (ENSMUSG00000024357.10, intron 7 of 9) 8163 ENSMUSG00000117876.1 ENSMUSG00000117876 ENSMUST00000236119 Gm50146 antisense Interval_109257 chr3 138425120 138426102 + 0 NA intron (ENSMUSG00000037797.14, intron 6 of 8) protein_coding-intron (ENSMUSG00000037797.14, intron 6 of 8) 10145 ENSMUSG00000037797.14 ENSMUSG00000037797 ENSMUST00000013458 Adh4 protein_coding Interval_15439 chr10 46672552 46672806 + 0 NA Intergenic Intergenic 2535 ENSMUSG00000111754.1 ENSMUSG00000111754 ENSMUST00000217086 Gm19994 processed_pseudogene Interval_137965 chr6 83781595 83782022 + 0 NA Intergenic Intergenic -6050 ENSMUSG00000014748.13 ENSMUSG00000014748 ENSMUST00000138192 Tex261 protein_coding Interval_33360 chr11 116117135 116118637 + 0 NA intron (ENSMUSG00000020773.11, intron 2 of 3) protein_coding-intron (ENSMUSG00000020773.11, intron 2 of 3) -10803 ENSMUSG00000020773.11 ENSMUSG00000020773 ENSMUST00000133039 Trim47 protein_coding Interval_81987 chr18 66880844 66881211 + 0 NA Intergenic Intergenic -20521 ENSMUSG00000047259.3 ENSMUSG00000047259 ENSMUST00000057942 Mc4r protein_coding Interval_114688 chr4 83797747 83799192 + 0 NA exon (ENSMUSG00000052407.17, exon 7 of 7) protein_coding-exon (ENSMUSG00000052407.17, exon 7 of 7) 54792 ENSMUSG00000097942.1 ENSMUSG00000097942 ENSMUST00000182894 Gm26968 sense_intronic Interval_148181 chr7 79678618 79680902 + 0 NA intron (ENSMUSG00000046591.10, intron 8 of 20) protein_coding-intron (ENSMUSG00000046591.10, intron 8 of 21) 8839 ENSMUSG00000046591.10 ENSMUSG00000046591 ENSMUST00000206677 Ticrr protein_coding Interval_139706 chr6 107712108 107713976 + 0 NA Intergenic Intergenic 85268 ENSMUSG00000107496.1 ENSMUSG00000107496 ENSMUST00000203905 4933431M02Rik lincRNA Interval_102289 chr3 20729614 20731235 + 0 NA Intergenic Intergenic 53639 ENSMUSG00000103460.1 ENSMUSG00000103460 ENSMUST00000192492 Gm18491 processed_pseudogene Interval_6859 chr1 120146073 120147745 + 0 NA intron (ENSMUSG00000026388.15, intron 1 of 4) protein_coding-intron (ENSMUSG00000026388.15, intron 1 of 4) -3690 ENSMUSG00000026388.15 ENSMUSG00000026388 ENSMUST00000128578 3110009E18Rik protein_coding Interval_104605 chr3 68720306 68721268 + 0 NA Intergenic Intergenic -12350 ENSMUSG00000058360.5 ENSMUSG00000058360 ENSMUST00000080726 Gm10040 pseudogene Interval_121457 chr4 155950273 155950530 + 0 NA intron (ENSMUSG00000023286.16, intron 2 of 6) protein_coding-intron (ENSMUSG00000023286.16, intron 3 of 7) 6570 ENSMUSG00000023286.16 ENSMUSG00000023286 ENSMUST00000124092 Ube2j2 protein_coding Interval_42020 chr13 6580514 6581025 + 0 NA TTS (ENSMUSG00000021193.10) protein_coding-TTS (ENSMUSG00000021193.10) 13766 ENSMUSG00000021193.10 ENSMUSG00000021193 ENSMUST00000222061 Pitrm1 protein_coding Interval_63160 chr15 99449110 99450023 + 0 NA intron (ENSMUSG00000023009.14, intron 1 of 12) protein_coding-intron (ENSMUSG00000023009.14, intron 1 of 12) 8146 ENSMUSG00000023009.14 ENSMUSG00000023009 ENSMUST00000161948 Nckap5l protein_coding Interval_115013 chr4 88463461 88463717 + 0 NA Intergenic Intergenic -24661 ENSMUSG00000028497.12 ENSMUSG00000028497 ENSMUST00000030221 Hacd4 protein_coding Interval_151295 chr7 120754828 120756166 + 0 NA intron (ENSMUSG00000030889.14, intron 3 of 22) protein_coding-intron (ENSMUSG00000030889.14, intron 3 of 33) -15536 ENSMUSG00000108830.1 ENSMUSG00000108830 ENSMUST00000208830 Gm44661 TEC Interval_51609 chr14 30679534 30679730 + 0 NA intron (ENSMUSG00000052395.17, intron 10 of 11) protein_coding-intron (ENSMUSG00000052395.17, intron 10 of 12) 25225 ENSMUSG00000052395.17 ENSMUSG00000052395 ENSMUST00000226805 Rft1 protein_coding Interval_40148 chr12 101964815 101965514 + 0 NA Intergenic Intergenic -6921 ENSMUSG00000021189.11 ENSMUSG00000021189 ENSMUST00000159883 Atxn3 protein_coding Interval_174462 chrX 152768977 152770322 + 0 NA promoter-TSS (ENSMUSG00000045180.13) protein_coding-promoter-TSS (ENSMUSG00000045180.13) -12272 ENSMUSG00000025333.10 ENSMUSG00000025333 ENSMUST00000139310 Gpr143 protein_coding Interval_132825 chr5 148148467 148149301 + 0 NA intron (ENSMUSG00000029651.16, intron 2 of 3) protein_coding-intron (ENSMUSG00000029651.16, intron 4 of 14) 35493 ENSMUSG00000066554.6 ENSMUSG00000066554 ENSMUST00000150411 Gm10167 processed_pseudogene Interval_4097 chr1 68159830 68160043 + 0 NA intron (ENSMUSG00000062209.15, intron 20 of 26) protein_coding-intron (ENSMUSG00000062209.15, intron 20 of 27) -43389 ENSMUSG00000102449.1 ENSMUSG00000102449 ENSMUST00000193344 Gm37100 TEC Interval_108385 chr3 126464341 126464859 + 0 NA Intergenic Intergenic 16857 ENSMUSG00000105233.1 ENSMUSG00000105233 ENSMUST00000197129 Gm20568 processed_pseudogene Interval_71974 chr17 27378182 27379105 + 0 NA Intergenic Intergenic -19504 ENSMUSG00000116970.1 ENSMUSG00000116970 ENSMUST00000232032 Gm49796 lincRNA Interval_155655 chr8 35699264 35699454 + 0 NA Intergenic Intergenic 20590 ENSMUSG00000110335.1 ENSMUSG00000110335 ENSMUST00000209585 1700015I17Rik lincRNA Interval_144852 chr7 28615512 28615995 + 0 NA TTS (ENSMUSG00000037469.11) protein_coding-TTS (ENSMUSG00000037469.11) -13495 ENSMUSG00000108905.1 ENSMUSG00000108905 ENSMUST00000208431 Gm44618 lincRNA Interval_20821 chr10 121297194 121297952 + 0 NA promoter-TSS (ENSMUSG00000052302.6) protein_coding-promoter-TSS (ENSMUSG00000052302.6) -45603 ENSMUSG00000111940.1 ENSMUSG00000111940 ENSMUST00000218322 Gm4478 processed_pseudogene Interval_103413 chr3 41396123 41396872 + 0 NA Intergenic Intergenic 42350 ENSMUSG00000105297.1 ENSMUSG00000105297 ENSMUST00000196142 1700052H01Rik lincRNA Interval_163225 chr9 18613495 18614611 + 0 NA intron (ENSMUSG00000109564.1, intron 4 of 79) protein_coding-intron (ENSMUSG00000109564.1, intron 6 of 11) 39440 ENSMUSG00000084743.1 ENSMUSG00000084743 ENSMUST00000122794 Gm25295 misc_RNA Interval_138741 chr6 91570288 91570737 + 0 NA Intergenic Intergenic -24246 ENSMUSG00000108335.1 ENSMUSG00000108335 ENSMUST00000206407 Gm45215 processed_pseudogene Interval_144714 chr7 27688840 27689802 + 0 NA promoter-TSS (ENSMUSG00000057093.14) protein_coding-promoter-TSS (ENSMUSG00000057093.14) -2592 ENSMUSG00000057093.14 ENSMUSG00000057093 ENSMUST00000076421 Zfp607b protein_coding Interval_69302 chr16 92039283 92040133 + 0 NA Intergenic Intergenic -2969 ENSMUSG00000089293.1 ENSMUSG00000089293 ENSMUST00000158668 Gm23210 snRNA Interval_40759 chr12 108206581 108207302 + 0 NA intron (ENSMUSG00000084883.2, intron 5 of 5) protein_coding-intron (ENSMUSG00000084883.2, intron 6 of 6) 7856 ENSMUSG00000021258.10 ENSMUSG00000021258 ENSMUST00000223363 Ccnk protein_coding Interval_168726 chr9 86451304 86452561 + 0 NA exon (ENSMUSG00000032415.14, exon 2 of 10) protein_coding-exon (ENSMUSG00000032415.14, exon 2 of 10) 13018 ENSMUSG00000032415.14 ENSMUSG00000032415 ENSMUST00000121189 Ube2cbp protein_coding Interval_135722 chr6 45109372 45110095 + 0 NA intron (ENSMUSG00000039419.17, intron 2 of 3) protein_coding-intron (ENSMUSG00000039419.17, intron 1 of 23) -25537 ENSMUSG00000108070.1 ENSMUSG00000108070 ENSMUST00000203218 Gm43872 TEC Interval_47134 chr13 76176849 76177064 + 0 NA intron (ENSMUSG00000033991.9, intron 40 of 44) protein_coding-intron (ENSMUSG00000033991.9, intron 40 of 43) -22035 ENSMUSG00000114664.1 ENSMUSG00000114664 ENSMUST00000225364 Gm48639 TEC Interval_92983 chr2 69168437 69169203 + 0 NA intron (ENSMUSG00000034738.8, intron 8 of 15) protein_coding-intron (ENSMUSG00000034738.8, intron 8 of 15) -10485 ENSMUSG00000034738.8 ENSMUSG00000034738 ENSMUST00000141276 Nostrin protein_coding Interval_108784 chr3 131258843 131259683 + 0 NA intron (ENSMUSG00000027984.8, intron 1 of 2) protein_coding-intron (ENSMUSG00000027984.8, intron 1 of 7) 12761 ENSMUSG00000027984.8 ENSMUSG00000027984 ENSMUST00000152427 Hadh protein_coding Interval_36664 chr12 51849859 51850399 + 0 NA Intergenic Intergenic -9508 ENSMUSG00000112746.1 ENSMUSG00000112746 ENSMUST00000218295 Gm19309 processed_pseudogene Interval_154368 chr8 15036279 15037046 + 0 NA Intergenic Intergenic 6415 ENSMUSG00000049008.4 ENSMUSG00000049008 ENSMUST00000123331 BB014433 protein_coding Interval_123502 chr5 33005813 33006145 + 0 NA Intergenic Intergenic -12899 ENSMUSG00000018965.11 ENSMUSG00000018965 ENSMUST00000136667 Ywhah protein_coding Interval_6460 chr1 110336505 110337731 + 0 NA Intergenic Intergenic 74162 ENSMUSG00000100290.1 ENSMUSG00000100290 ENSMUST00000187425 Gm18552 processed_pseudogene Interval_7328 chr1 129103911 129104140 + 0 NA Intergenic Intergenic -179082 ENSMUSG00000103742.1 ENSMUSG00000103742 ENSMUST00000195110 Gm38240 TEC Interval_25069 chr11 43626025 43627437 + 0 NA Intergenic Intergenic -10402 ENSMUSG00000082614.1 ENSMUSG00000082614 ENSMUST00000117511 Gm12149 processed_pseudogene Interval_93988 chr2 80524786 80525187 + 0 NA intron (ENSMUSG00000027002.13, intron 1 of 6) protein_coding-intron (ENSMUSG00000027002.13, intron 18 of 30) 694 ENSMUSG00000027002.13 ENSMUSG00000027002 ENSMUST00000134587 Nckap1 protein_coding Interval_145188 chr7 30534302 30535788 + 0 NA promoter-TSS (ENSMUSG00000036882.7) protein_coding-promoter-TSS (ENSMUSG00000036882.7) -1644 ENSMUSG00000036882.7 ENSMUSG00000036882 ENSMUST00000208723 Arhgap33 protein_coding Interval_59547 chr15 55198307 55200157 + 0 NA intron (ENSMUSG00000022419.16, intron 4 of 4) protein_coding-intron (ENSMUSG00000022419.16, intron 4 of 8) 63371 ENSMUSG00000095792.1 ENSMUSG00000095792 ENSMUST00000179457 Gm26296 snRNA Interval_12670 chr10 4249174 4249802 + 0 NA Intergenic Intergenic -36374 ENSMUSG00000111266.1 ENSMUSG00000111266 ENSMUST00000213553 Gm30570 lincRNA Interval_156798 chr8 60472676 60473328 + 0 NA intron (ENSMUSG00000070023.5, intron 2 of 2) protein_coding-intron (ENSMUSG00000070023.5, intron 2 of 2) 30196 ENSMUSG00000070023.5 ENSMUSG00000070023 ENSMUST00000093494 Gm10283 protein_coding Interval_132839 chr5 148257269 148257575 + 0 NA intron (ENSMUSG00000029651.16, intron 7 of 14) protein_coding-intron (ENSMUSG00000029651.16, intron 7 of 14) 21430 ENSMUSG00000029651.16 ENSMUSG00000029651 ENSMUST00000085554 Mtus2 protein_coding Interval_160574 chr8 110789046 110790253 + 0 NA intron (ENSMUSG00000031750.15, intron 1 of 1) protein_coding-intron (ENSMUSG00000031750.15, intron 1 of 6) -15989 ENSMUSG00000085068.1 ENSMUSG00000085068 ENSMUST00000157018 Gm15895 antisense Interval_90197 chr2 28973730 28974872 + 0 NA intron (ENSMUSG00000079502.8, intron 3 of 5) protein_coding-intron (ENSMUSG00000079502.8, intron 3 of 5) -39692 ENSMUSG00000083773.4 ENSMUSG00000083773 ENSMUST00000121658 Gm13394 processed_pseudogene Interval_61459 chr15 81753900 81754457 + 0 NA intron (ENSMUSG00000022390.11, intron 1 of 5) protein_coding-intron (ENSMUSG00000022390.11, intron 1 of 22) -8648 ENSMUSG00000022391.16 ENSMUSG00000022391 ENSMUST00000230726 Rangap1 protein_coding Interval_105799 chr3 89388495 89389018 + 0 NA intron (ENSMUSG00000028042.15, intron 2 of 2) protein_coding-intron (ENSMUSG00000028042.15, intron 1 of 2) 4622 ENSMUSG00000028042.15 ENSMUSG00000028042 ENSMUST00000139094 Zbtb7b protein_coding Interval_168159 chr9 77616578 77617493 + 0 NA Intergenic Intergenic -19465 ENSMUSG00000044938.8 ENSMUSG00000044938 ENSMUST00000057781 Klhl31 protein_coding Interval_116507 chr4 114876165 114876963 + 0 NA intron (ENSMUSG00000085323.1, intron 1 of 1) antisense-intron (ENSMUSG00000085323.1, intron 1 of 1) 26295 ENSMUSG00000085323.1 ENSMUSG00000085323 ENSMUST00000155499 9130410C08Rik antisense Interval_107995 chr3 119195765 119195960 + 0 NA intron (ENSMUSG00000033308.16, intron 18 of 22) protein_coding-intron (ENSMUSG00000033308.16, intron 18 of 22) 327618 ENSMUSG00000106542.1 ENSMUSG00000106542 ENSMUST00000197510 Gm43410 TEC Interval_12389 chr1 192854765 192856375 + 0 NA promoter-TSS (ENSMUSG00000016262.14) protein_coding-promoter-TSS (ENSMUSG00000016262.14) 186 ENSMUSG00000016262.14 ENSMUSG00000016262 ENSMUST00000125391 Sertad4 protein_coding Interval_26169 chr11 54859262 54861116 + 0 NA intron (ENSMUSG00000020268.14, intron 1 of 7) protein_coding-intron (ENSMUSG00000020268.14, intron 1 of 3) 727 ENSMUSG00000020268.14 ENSMUSG00000020268 ENSMUST00000135853 Lyrm7 protein_coding Interval_66799 chr16 37737725 37738083 + 0 NA Intergenic Intergenic -39151 ENSMUSG00000022816.11 ENSMUSG00000022816 ENSMUST00000123077 Fstl1 protein_coding Interval_14948 chr10 41400366 41401955 + 0 NA intron (ENSMUSG00000091415.5, intron 27 of 39) protein_coding-intron (ENSMUSG00000091415.5, intron 27 of 39) 2671 ENSMUSG00000111315.1 ENSMUSG00000111315 ENSMUST00000214384 Gm47473 processed_pseudogene Interval_154837 chr8 24152814 24153772 + 0 NA intron (ENSMUSG00000037492.16, intron 7 of 7) protein_coding-intron (ENSMUSG00000037492.16, intron 7 of 7) -20611 ENSMUSG00000053979.4 ENSMUSG00000053979 ENSMUST00000066740 A730045E13Rik lincRNA Interval_123324 chr5 31451523 31453063 + 0 NA promoter-TSS (ENSMUSG00000062761.7) protein_coding-promoter-TSS (ENSMUSG00000062761.7) 38 ENSMUSG00000106950.1 ENSMUSG00000106950 ENSMUST00000201366 4930478M09Rik TEC Interval_123867 chr5 36115280 36115678 + 0 NA intron (ENSMUSG00000029093.14, intron 3 of 7) protein_coding-intron (ENSMUSG00000029093.14, intron 3 of 26) -88542 ENSMUSG00000043430.5 ENSMUSG00000043430 ENSMUST00000052224 Psapl1 protein_coding Interval_151773 chr7 126565738 126566755 + 0 NA promoter-TSS (ENSMUSG00000030738.11) protein_coding-promoter-TSS (ENSMUSG00000030738.11) -42 ENSMUSG00000030738.11 ENSMUSG00000030738 ENSMUST00000205949 Eif3c protein_coding Interval_151261 chr7 120398953 120399266 + 0 NA intron (ENSMUSG00000054746.18, intron 26 of 30) protein_coding-intron (ENSMUSG00000054746.18, intron 26 of 30) 70439 ENSMUSG00000054746.18 ENSMUSG00000054746 ENSMUST00000076272 Abca15 protein_coding Interval_5769 chr1 91606653 91607809 + 0 NA Intergenic Intergenic -4175 ENSMUSG00000101705.1 ENSMUSG00000101705 ENSMUST00000188800 Gm28380 lincRNA Interval_70440 chr17 10252244 10252899 + 0 NA intron (ENSMUSG00000062078.15, intron 1 of 4) protein_coding-intron (ENSMUSG00000062078.15, intron 3 of 6) 66790 ENSMUSG00000062078.15 ENSMUSG00000062078 ENSMUST00000233684 Qk protein_coding Interval_106041 chr3 91215808 91216509 + 0 NA Intergenic Intergenic -125355 ENSMUSG00000091175.2 ENSMUSG00000091175 ENSMUST00000166173 S100a7l2 protein_coding Interval_122979 chr5 28117837 28118862 + 0 NA Intergenic Intergenic 43683 ENSMUSG00000045294.11 ENSMUSG00000045294 ENSMUST00000199728 Insig1 protein_coding Interval_110899 chr4 9779858 9780502 + 0 NA exon (ENSMUSG00000085558.7, exon 3 of 3) processed_transcript-exon (ENSMUSG00000085558.7, exon 3 of 3) 9383 ENSMUSG00000085558.7 ENSMUSG00000085558 ENSMUST00000154082 4930412C18Rik processed_transcript Interval_18934 chr10 93247566 93248338 + 0 NA exon (ENSMUSG00000008398.16, exon 5 of 5) protein_coding-exon (ENSMUSG00000008398.16, exon 5 of 5) 8929 ENSMUSG00000020015.10 ENSMUSG00000020015 ENSMUST00000216729 Cdk17 protein_coding Interval_4540 chr1 74882004 74882935 + 0 NA TTS (ENSMUSG00000055197.4) protein_coding-TTS (ENSMUSG00000055197.4) 2139 ENSMUSG00000055197.4 ENSMUSG00000055197 ENSMUST00000162938 Fev protein_coding Interval_65256 chr16 20908247 20911825 + 0 NA Intergenic Intergenic -16477 ENSMUSG00000116850.1 ENSMUSG00000116850 ENSMUST00000232124 Gm49742 lincRNA Interval_713 chr1 10094950 10095533 + 0 NA promoter-TSS (ENSMUSG00000056763.16) protein_coding-promoter-TSS (ENSMUSG00000056763.16) -37297 ENSMUSG00000102356.1 ENSMUSG00000102356 ENSMUST00000194474 1700047N06Rik TEC Interval_72255 chr17 28834114 28834735 + 0 NA intron (ENSMUSG00000063952.16, intron 9 of 10) protein_coding-intron (ENSMUSG00000063952.16, intron 11 of 12) -11667 ENSMUSG00000117301.1 ENSMUSG00000117301 ENSMUST00000233498 Gm35883 antisense Interval_20718 chr10 120487867 120488703 + 0 NA Intergenic Intergenic -11816 ENSMUSG00000056758.14 ENSMUSG00000056758 ENSMUST00000159310 Hmga2 protein_coding Interval_52565 chr14 47546012 47547325 + 0 NA intron (ENSMUSG00000037526.7, intron 8 of 10) protein_coding-intron (ENSMUSG00000037526.7, intron 7 of 9) 4688 ENSMUSG00000115823.1 ENSMUSG00000115823 ENSMUST00000228568 Gm49004 antisense Interval_149771 chr7 101367830 101368319 + 0 NA intron (ENSMUSG00000032812.18, intron 3 of 3) protein_coding-intron (ENSMUSG00000032812.18, intron 2 of 33) -13635 ENSMUSG00000109656.1 ENSMUSG00000109656 ENSMUST00000210076 Gm45548 TEC Interval_126169 chr5 81256011 81257042 + 0 NA intron (ENSMUSG00000037605.16, intron 3 of 10) protein_coding-intron (ENSMUSG00000037605.16, intron 3 of 26) 7277 ENSMUSG00000107226.1 ENSMUSG00000107226 ENSMUST00000201153 Gm43594 TEC Interval_88619 chr2 6871826 6873020 + 0 NA promoter-TSS (ENSMUSG00000002107.18) protein_coding-promoter-TSS (ENSMUSG00000002107.18) 174 ENSMUSG00000002107.18 ENSMUSG00000002107 ENSMUST00000182037 Celf2 protein_coding Interval_46028 chr13 60388833 60390122 + 0 NA Intergenic Intergenic 45254 ENSMUSG00000114274.1 ENSMUSG00000114274 ENSMUST00000225281 Gm35333 lincRNA Interval_110611 chr4 4686991 4687593 + 0 NA Intergenic Intergenic -42281 ENSMUSG00000095971.1 ENSMUSG00000095971 ENSMUST00000180325 Gm26436 snoRNA Interval_114339 chr4 73773781 73774283 + 0 NA intron (ENSMUSG00000043003.14, intron 1 of 16) protein_coding-intron (ENSMUSG00000043003.14, intron 2 of 17) 16962 ENSMUSG00000043003.14 ENSMUSG00000043003 ENSMUST00000222414 Rasef protein_coding Interval_104537 chr3 67524833 67525690 + 0 NA Intergenic Intergenic -9738 ENSMUSG00000049404.7 ENSMUSG00000049404 ENSMUST00000054825 Rarres1 protein_coding Interval_123469 chr5 32729569 32729784 + 0 NA exon (ENSMUSG00000082305.4, exon 9 of 18) transcribed_unprocessed_pseudogene-exon (ENSMUSG00000082305.4, exon 9 of 18) 9346 ENSMUSG00000082305.4 ENSMUSG00000082305 ENSMUST00000202224 Gm2420 transcribed_unprocessed_pseudogene Interval_2582 chr1 40844822 40845196 + 0 NA intron (ENSMUSG00000079588.3, intron 4 of 4) protein_coding-intron (ENSMUSG00000079588.3, intron 4 of 4) 19223 ENSMUSG00000094136.2 ENSMUSG00000094136 ENSMUST00000178542 Gm5973 processed_pseudogene Interval_60546 chr15 74799193 74800189 + 0 NA promoter-TSS (ENSMUSG00000044678.11) protein_coding-promoter-TSS (ENSMUSG00000044678.11) -158 ENSMUSG00000044678.11 ENSMUSG00000044678 ENSMUST00000060301 Ly6k protein_coding Interval_41792 chr12 119330306 119331350 + 0 NA intron (ENSMUSG00000041886.7, intron 5 of 8) protein_coding-intron (ENSMUSG00000041886.7, intron 1 of 5) 16558 ENSMUSG00000041886.7 ENSMUSG00000041886 ENSMUST00000048880 Macc1 protein_coding Interval_2764 chr1 44418771 44419210 + 0 NA Intergenic Intergenic 26181 ENSMUSG00000100769.1 ENSMUSG00000100769 ENSMUST00000190951 Gm28893 processed_transcript Interval_70412 chr17 9904936 9906608 + 0 NA Intergenic Intergenic 23995 ENSMUSG00000117227.1 ENSMUSG00000117227 ENSMUST00000232911 Gm34799 lincRNA Interval_38275 chr12 76861871 76862147 + 0 NA intron (ENSMUSG00000033373.16, intron 1 of 4) protein_coding-intron (ENSMUSG00000033373.16, intron 1 of 11) -25049 ENSMUSG00000033373.16 ENSMUSG00000033373 ENSMUST00000130605 Fntb protein_coding Interval_132093 chr5 142741508 142742555 + 0 NA intron (ENSMUSG00000039477.16, intron 14 of 24) protein_coding-intron (ENSMUSG00000039477.16, intron 14 of 24) 23991 ENSMUSG00000039477.16 ENSMUSG00000039477 ENSMUST00000198181 Tnrc18 protein_coding Interval_139339 chr6 99096251 99096524 + 0 NA promoter-TSS (ENSMUSG00000030067.17) protein_coding-promoter-TSS (ENSMUSG00000030067.17) -20330 ENSMUSG00000105902.1 ENSMUSG00000105902 ENSMUST00000200105 Gm49348 miRNA Interval_161870 chr8 123333970 123334973 + 0 NA intron (ENSMUSG00000010154.7, intron 1 of 14) protein_coding-intron (ENSMUSG00000010154.7, intron 1 of 14) -15780 ENSMUSG00000010154.7 ENSMUSG00000010154 ENSMUST00000212404 Spire2 protein_coding Interval_103398 chr3 41215584 41215990 + 0 NA Intergenic Intergenic -43124 ENSMUSG00000105258.1 ENSMUSG00000105258 ENSMUST00000197878 Gm40038 lincRNA Interval_58414 chr15 34306199 34307418 + 0 NA exon (ENSMUSG00000022324.15, exon 1 of 19) protein_coding-exon (ENSMUSG00000022324.15, exon 1 of 19) 123 ENSMUSG00000022324.15 ENSMUSG00000022324 ENSMUST00000227759 Matn2 protein_coding Interval_16107 chr10 60774371 60775736 + 0 NA exon (ENSMUSG00000020099.8, exon 9 of 17) protein_coding-exon (ENSMUSG00000020099.8, exon 9 of 17) -22270 ENSMUSG00000020100.15 ENSMUSG00000020100 ENSMUST00000144989 Slc29a3 protein_coding Interval_5867 chr1 92814418 92814751 + 0 NA Intergenic Intergenic -17385 ENSMUSG00000034220.7 ENSMUSG00000034220 ENSMUST00000190215 Gpc1 protein_coding Interval_145229 chr7 30791404 30792192 + 0 NA TTS (ENSMUSG00000074199.7) protein_coding-TTS (ENSMUSG00000074199.7) 3893 ENSMUSG00000074199.7 ENSMUSG00000074199 ENSMUST00000188036 Krtdap protein_coding Interval_17972 chr10 81145647 81148549 + 0 NA intron (ENSMUSG00000035011.15, intron 2 of 2) protein_coding-intron (ENSMUSG00000035011.15, intron 2 of 2) 10532 ENSMUSG00000035011.15 ENSMUSG00000035011 ENSMUST00000117956 Zbtb7a protein_coding Interval_83063 chr18 80973495 80974659 + 0 NA exon (ENSMUSG00000024565.10, exon 2 of 4) protein_coding-exon (ENSMUSG00000024565.10, exon 2 of 4) 12459 ENSMUSG00000024565.10 ENSMUSG00000024565 ENSMUST00000235746 Sall3 protein_coding Interval_105366 chr3 85564777 85564960 + 0 NA intron (ENSMUSG00000085527.1, intron 1 of 1) sense_intronic-intron (ENSMUSG00000085527.1, intron 1 of 1) 9077 ENSMUSG00000085527.1 ENSMUSG00000085527 ENSMUST00000128872 Gm15535 sense_intronic Interval_174009 chrX 129538103 129539032 + 0 NA TTS (ENSMUSG00000081900.1) processed_pseudogene-TTS (ENSMUSG00000081900.1) 1057 ENSMUSG00000081900.1 ENSMUSG00000081900 ENSMUST00000118693 Gm14985 processed_pseudogene Interval_11565 chr1 182762231 182762477 + 0 NA Intergenic Intergenic -2202 ENSMUSG00000038576.15 ENSMUSG00000038576 ENSMUST00000085724 Susd4 protein_coding Interval_170687 chr9 110092804 110093537 + 0 NA TTS (ENSMUSG00000032480.17) protein_coding-TTS (ENSMUSG00000032480.17) -7655 ENSMUSG00000032480.17 ENSMUSG00000032480 ENSMUST00000197979 Dhx30 protein_coding Interval_8759 chr1 150545095 150545836 + 0 NA Intergenic Intergenic -3852 ENSMUSG00000101519.1 ENSMUSG00000101519 ENSMUST00000186208 Ska2l-ps processed_pseudogene Interval_15432 chr10 46380125 46380888 + 0 NA Intergenic Intergenic 2897 ENSMUSG00000094681.1 ENSMUSG00000094681 ENSMUST00000180247 Gm25740 snRNA Interval_137171 chr6 68934726 68935317 + 0 NA Intergenic Intergenic -4287 ENSMUSG00000079543.3 ENSMUSG00000079543 ENSMUST00000114212 Igkv13-85 IG_V_gene Interval_153507 chr7 145285302 145285727 + 0 NA Intergenic Intergenic -1592 ENSMUSG00000048677.9 ENSMUSG00000048677 ENSMUST00000209156 Tpcn2 protein_coding Interval_5392 chr1 88456710 88457258 + 0 NA intron (ENSMUSG00000099553.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000099553.1, intron 1 of 2) -2699 ENSMUSG00000100908.1 ENSMUSG00000100908 ENSMUST00000186556 Gm28888 lincRNA Interval_14189 chr10 28553064 28553368 + 0 NA intron (ENSMUSG00000019889.10, intron 14 of 14) protein_coding-intron (ENSMUSG00000019889.10, intron 14 of 31) -33777 ENSMUSG00000019889.10 ENSMUSG00000019889 ENSMUST00000220404 Ptprk protein_coding Interval_139509 chr6 100628357 100628584 + 0 NA intron (ENSMUSG00000035378.17, intron 6 of 7) protein_coding-intron (ENSMUSG00000035378.17, intron 6 of 7) -1530 ENSMUSG00000108019.1 ENSMUSG00000108019 ENSMUST00000203525 Gm44108 processed_pseudogene Interval_79765 chr18 35002797 35003293 + 0 NA TTS (ENSMUSG00000118380.1) processed_transcript-TTS (ENSMUSG00000118380.1) 20075 ENSMUSG00000118380.1 ENSMUSG00000118380 ENSMUST00000238090 Gm36037 processed_transcript Interval_66339 chr16 33239506 33240260 + 0 NA intron (ENSMUSG00000022807.9, intron 12 of 12) protein_coding-intron (ENSMUSG00000022807.9, intron 12 of 12) -11559 ENSMUSG00000022808.5 ENSMUSG00000022808 ENSMUST00000231242 Snx4 protein_coding Interval_50080 chr14 7851178 7852111 + 0 NA intron (ENSMUSG00000025278.9, intron 1 of 45) protein_coding-intron (ENSMUSG00000025278.9, intron 1 of 45) -33097 ENSMUSG00000025278.9 ENSMUSG00000025278 ENSMUST00000228206 Flnb protein_coding Interval_78035 chr18 7206515 7206741 + 0 NA intron (ENSMUSG00000061802.6, intron 17 of 20) protein_coding-intron (ENSMUSG00000061802.6, intron 17 of 20) -22555 ENSMUSG00000061802.6 ENSMUSG00000061802 ENSMUST00000234196 Armc4 protein_coding Interval_44175 chr13 41576846 41577487 + 0 NA TTS (ENSMUSG00000092835.1) snRNA-TTS (ENSMUSG00000092835.1) 908 ENSMUSG00000092835.1 ENSMUSG00000092835 ENSMUST00000175094 Gm24819 snRNA Interval_42865 chr13 20599338 20600841 + 0 NA intron (ENSMUSG00000041112.17, intron 20 of 21) protein_coding-intron (ENSMUSG00000041112.17, intron 20 of 21) -45668 ENSMUSG00000113130.1 ENSMUSG00000113130 ENSMUST00000222716 Gm47721 processed_pseudogene Interval_156114 chr8 44920244 44921440 + 0 NA Intergenic Intergenic 14317 ENSMUSG00000110409.1 ENSMUSG00000110409 ENSMUST00000211534 Gm9908 bidirectional_promoter_lncRNA Interval_45623 chr13 56327878 56328328 + 0 NA Intergenic Intergenic -7769 ENSMUSG00000114911.1 ENSMUSG00000114911 ENSMUST00000224089 Gm17878 processed_pseudogene Interval_168165 chr9 77674667 77675304 + 0 NA Intergenic Intergenic 32897 ENSMUSG00000110838.1 ENSMUSG00000110838 ENSMUST00000214443 Gm47789 lincRNA Interval_136494 chr6 54931434 54931789 + 0 NA intron (ENSMUSG00000038058.14, intron 5 of 6) protein_coding-intron (ENSMUSG00000038058.14, intron 9 of 11) 8240 ENSMUSG00000038058.14 ENSMUSG00000038058 ENSMUST00000203837 Nod1 protein_coding Interval_155987 chr8 41494641 41494918 + 0 NA Intergenic Intergenic -81857 ENSMUSG00000031590.8 ENSMUSG00000031590 ENSMUST00000210873 Frg1 protein_coding Interval_53104 chr14 54479227 54479856 + 0 NA TTS (ENSMUSG00000022176.11) protein_coding-TTS (ENSMUSG00000022176.11) 3301 ENSMUSG00000022176.11 ENSMUSG00000022176 ENSMUST00000168930 Rem2 protein_coding Interval_26256 chr11 55450054 55450866 + 0 NA exon (ENSMUSG00000018585.9, exon 3 of 4) protein_coding-exon (ENSMUSG00000018585.9, exon 3 of 4) 10737 ENSMUSG00000018585.9 ENSMUSG00000018585 ENSMUST00000138412 Atox1 protein_coding Interval_8403 chr1 138876359 138876921 + 0 NA exon (ENSMUSG00000099808.2, exon 2 of 2) lincRNA-exon (ENSMUSG00000099808.2, exon 2 of 2) 311 ENSMUSG00000099808.2 ENSMUSG00000099808 ENSMUST00000186955 1700019P21Rik lincRNA Interval_13314 chr10 14623027 14623221 + 0 NA Intergenic Intergenic 36188 ENSMUSG00000112490.1 ENSMUSG00000112490 ENSMUST00000217881 Gm48068 processed_pseudogene Interval_111740 chr4 27100615 27101210 + 0 NA Intergenic Intergenic 25597 ENSMUSG00000083447.1 ENSMUSG00000083447 ENSMUST00000120562 Gm11904 processed_pseudogene Interval_73960 chr17 45685102 45686938 + 0 NA promoter-TSS (ENSMUSG00000023939.7) protein_coding-promoter-TSS (ENSMUSG00000023939.7) -337 ENSMUSG00000023939.7 ENSMUSG00000023939 ENSMUST00000148537 Mrpl14 protein_coding Interval_157311 chr8 69206265 69206782 + 0 NA Intergenic Intergenic -2515 ENSMUSG00000059897.5 ENSMUSG00000059897 ENSMUST00000110216 Zfp930 protein_coding Interval_46932 chr13 73513145 73514503 + 0 NA TTS (ENSMUSG00000021608.15) protein_coding-TTS (ENSMUSG00000021608.15) -22923 ENSMUSG00000021609.6 ENSMUSG00000021609 ENSMUST00000022100 Slc6a3 protein_coding Interval_101623 chr3 8014805 8015044 + 0 NA Intergenic Intergenic -60042 ENSMUSG00000100010.5 ENSMUSG00000100010 ENSMUST00000187729 1700010I02Rik lincRNA Interval_55275 chr14 79912811 79913031 + 0 NA intron (ENSMUSG00000097927.2, intron 1 of 4) lincRNA-intron (ENSMUSG00000097927.2, intron 3 of 4) 14454 ENSMUSG00000115190.1 ENSMUSG00000115190 ENSMUST00000227349 Gm49542 lincRNA Interval_59360 chr15 51899065 51899945 + 0 NA intron (ENSMUSG00000115616.1, intron 2 of 2) lincRNA-intron (ENSMUSG00000115616.1, intron 2 of 2) 2418 ENSMUSG00000115616.1 ENSMUSG00000115616 ENSMUST00000226818 Gm48923 lincRNA Interval_47947 chr13 94559367 94560258 + 0 NA intron (ENSMUSG00000021686.6, intron 11 of 11) protein_coding-intron (ENSMUSG00000021686.6, intron 26 of 26) 42650 ENSMUSG00000084423.1 ENSMUSG00000084423 ENSMUST00000122474 Gm25109 miRNA Interval_50624 chr14 16770794 16770961 + 0 NA intron (ENSMUSG00000017491.9, intron 1 of 3) protein_coding-intron (ENSMUSG00000017491.9, intron 1 of 3) -175782 ENSMUSG00000114890.1 ENSMUSG00000114890 ENSMUST00000223705 Tpi-rs9 processed_pseudogene Interval_115061 chr4 89136599 89138187 + 0 NA exon (ENSMUSG00000062937.7, exon 1 of 8) protein_coding-exon (ENSMUSG00000062937.7, exon 1 of 8) -9167 ENSMUSG00000085569.1 ENSMUSG00000085569 ENSMUST00000138655 Gm12602 processed_transcript Interval_8466 chr1 139657388 139657955 + 0 NA intron (ENSMUSG00000090623.3, intron 1 of 5) unprocessed_pseudogene-intron (ENSMUSG00000090623.3, intron 1 of 5) 3228 ENSMUSG00000090623.3 ENSMUSG00000090623 ENSMUST00000170441 Cfhr3 unprocessed_pseudogene Interval_174036 chrX 130715616 130715866 + 0 NA Intergenic Intergenic -153844 ENSMUSG00000083024.1 ENSMUSG00000083024 ENSMUST00000121102 Gm14982 processed_pseudogene Interval_65221 chr16 20635676 20636718 + 0 NA intron (ENSMUSG00000022842.18, intron 5 of 10) protein_coding-intron (ENSMUSG00000022842.18, intron 7 of 18) -3009 ENSMUSG00000022842.18 ENSMUSG00000022842 ENSMUST00000231739 Ece2 protein_coding Interval_148012 chr7 78065739 78065919 + 0 NA Intergenic Intergenic -39189 ENSMUSG00000104817.1 ENSMUSG00000104817 ENSMUST00000196301 Gm44358 miRNA Interval_87056 chr19 45840227 45840996 + 0 NA intron (ENSMUSG00000039901.10, intron 24 of 25) protein_coding-intron (ENSMUSG00000039901.10, intron 24 of 25) -3006 ENSMUSG00000117956.1 ENSMUSG00000117956 ENSMUST00000235344 Gm50196 antisense Interval_37105 chr12 58443039 58443456 + 0 NA Intergenic Intergenic -173957 ENSMUSG00000045930.3 ENSMUSG00000045930 ENSMUST00000062254 Clec14a protein_coding Interval_4514 chr1 74748446 74749395 + 0 NA promoter-TSS (ENSMUSG00000006542.13) protein_coding-promoter-TSS (ENSMUSG00000006542.13) 35 ENSMUSG00000006542.13 ENSMUSG00000006542 ENSMUST00000159728 Prkag3 protein_coding Interval_138886 chr6 92940562 92941820 + 0 NA intron (ENSMUSG00000097462.7, intron 1 of 5) protein_coding-intron (ENSMUSG00000030022.14, intron 2 of 39) 613 ENSMUSG00000097462.7 ENSMUSG00000097462 ENSMUST00000204609 9530026P05Rik antisense Interval_25133 chr11 44431228 44431802 + 0 NA Intergenic Intergenic 29838 ENSMUSG00000041231.15 ENSMUSG00000041231 ENSMUST00000150032 Ublcp1 protein_coding Interval_99021 chr2 156704682 156705912 + 0 NA intron (ENSMUSG00000061689.15, intron 4 of 12) protein_coding-intron (ENSMUSG00000061689.15, intron 2 of 10) 15612 ENSMUSG00000086638.7 ENSMUSG00000086638 ENSMUST00000130089 4930405A21Rik processed_transcript Interval_40219 chr12 102610846 102611161 + 0 NA intron (ENSMUSG00000057963.9, intron 2 of 4) protein_coding-intron (ENSMUSG00000057963.9, intron 3 of 9) -1677 ENSMUSG00000095174.1 ENSMUSG00000095174 ENSMUST00000178938 Gm20069 antisense Interval_27364 chr11 66992989 66993203 + 0 NA Intergenic Intergenic -8990 ENSMUSG00000085926.1 ENSMUSG00000085926 ENSMUST00000138819 Gm12299 processed_transcript Interval_169638 chr9 99607131 99607579 + 0 NA Intergenic Intergenic -5147 ENSMUSG00000037953.7 ENSMUSG00000037953 ENSMUST00000042553 A4gnt protein_coding Interval_46598 chr13 67463987 67464603 + 0 NA Intergenic Intergenic 4295 ENSMUSG00000097244.1 ENSMUSG00000097244 ENSMUST00000181249 Gm7928 processed_pseudogene Interval_100540 chr2 170028984 170029613 + 0 NA intron (ENSMUSG00000047907.11, intron 1 of 1) protein_coding-intron (ENSMUSG00000047907.11, intron 1 of 1) -66111 ENSMUSG00000103935.1 ENSMUSG00000103935 ENSMUST00000194482 AY702102 TEC Interval_11142 chr1 179618282 179619011 + 0 NA intron (ENSMUSG00000038949.8, intron 9 of 10) protein_coding-intron (ENSMUSG00000038949.8, intron 9 of 10) -65199 ENSMUSG00000038936.13 ENSMUSG00000038936 ENSMUST00000192611 Sccpdh protein_coding Interval_86786 chr19 43886792 43887670 + 0 NA intron (ENSMUSG00000025195.9, intron 4 of 15) protein_coding-intron (ENSMUSG00000025195.9, intron 3 of 14) -7463 ENSMUSG00000025195.9 ENSMUSG00000025195 ENSMUST00000212157 Dnmbp protein_coding Interval_132449 chr5 144987685 144989353 + 0 NA intron (ENSMUSG00000038770.17, intron 9 of 9) protein_coding-intron (ENSMUSG00000038770.17, intron 11 of 12) -31659 ENSMUSG00000105177.1 ENSMUSG00000105177 ENSMUST00000196761 Gm43563 unprocessed_pseudogene Interval_21382 chr10 128285997 128286596 + 0 NA intron (ENSMUSG00000040033.16, intron 3 of 3) protein_coding-intron (ENSMUSG00000040033.16, intron 22 of 23) 2189 ENSMUSG00000040033.16 ENSMUSG00000040033 ENSMUST00000220277 Stat2 protein_coding Interval_157474 chr8 70593920 70595414 + 0 NA promoter-TSS (ENSMUSG00000019139.10) protein_coding-promoter-TSS (ENSMUSG00000019139.10) -1300 ENSMUSG00000019139.10 ENSMUSG00000019139 ENSMUST00000211773 Isyna1 protein_coding Interval_83431 chr18 85328457 85328965 + 0 NA Intergenic Intergenic 256875 ENSMUSG00000118198.1 ENSMUSG00000118198 ENSMUST00000237500 Gm50370 lincRNA Interval_97517 chr2 138358811 138359026 + 0 NA intron (ENSMUSG00000062098.11, intron 1 of 3) protein_coding-intron (ENSMUSG00000062098.11, intron 1 of 5) 102256 ENSMUSG00000062098.11 ENSMUSG00000062098 ENSMUST00000075410 Btbd3 protein_coding Interval_163654 chr9 23262291 23262724 + 0 NA intron (ENSMUSG00000031963.8, intron 3 of 14) protein_coding-intron (ENSMUSG00000031963.8, intron 3 of 14) 39221 ENSMUSG00000031963.8 ENSMUSG00000031963 ENSMUST00000214050 Bmper protein_coding Interval_155715 chr8 36377174 36377490 + 0 NA Intergenic Intergenic -3699 ENSMUSG00000098154.2 ENSMUSG00000098154 ENSMUST00000183049 Gm5787 processed_pseudogene Interval_166358 chr9 58570833 58571704 + 0 NA Intergenic Intergenic -11106 ENSMUSG00000032336.17 ENSMUSG00000032336 ENSMUST00000177020 Nptn protein_coding Interval_130471 chr5 127965682 127965880 + 0 NA intron (ENSMUSG00000034310.8, intron 4 of 8) protein_coding-intron (ENSMUSG00000034310.8, intron 4 of 8) 87250 ENSMUSG00000085328.2 ENSMUSG00000085328 ENSMUST00000164420 Gm17131 unprocessed_pseudogene Interval_99400 chr2 160613434 160613748 + 0 NA intron (ENSMUSG00000078956.3, intron 1 of 1) lincRNA-intron (ENSMUSG00000078956.3, intron 1 of 2) 6380 ENSMUSG00000078956.3 ENSMUSG00000078956 ENSMUST00000209603 Gm14221 lincRNA Interval_96680 chr2 127100882 127102211 + 0 NA Intergenic Intergenic 20504 ENSMUSG00000034906.15 ENSMUSG00000034906 ENSMUST00000156625 Ncaph protein_coding Interval_160691 chr8 111621743 111622732 + 0 NA TTS (ENSMUSG00000033545.14) protein_coding-TTS (ENSMUSG00000033545.14) 6350 ENSMUSG00000031958.16 ENSMUSG00000031958 ENSMUST00000070004 Ldhd protein_coding Interval_103466 chr3 41838942 41840217 + 0 NA Intergenic Intergenic 66398 ENSMUSG00000103952.1 ENSMUSG00000103952 ENSMUST00000192254 Gm37268 TEC Interval_43950 chr13 38290063 38290883 + 0 NA Intergenic Intergenic -19864 ENSMUSG00000114799.1 ENSMUSG00000114799 ENSMUST00000224243 Gm47978 processed_pseudogene Interval_69710 chr16 95717172 95717380 + 0 NA promoter-TSS (ENSMUSG00000022895.16) protein_coding-promoter-TSS (ENSMUSG00000022895.16) 14821 ENSMUSG00000022895.16 ENSMUSG00000022895 ENSMUST00000233578 Ets2 protein_coding Interval_128828 chr5 115489217 115490947 + 0 NA promoter-TSS (ENSMUSG00000094377.1) snRNA-promoter-TSS (ENSMUSG00000094377.1) -172 ENSMUSG00000094377.1 ENSMUSG00000094377 ENSMUST00000177864 Gm24407 snRNA Interval_125624 chr5 72855505 72856494 + 0 NA intron (ENSMUSG00000029217.16, intron 1 of 2) protein_coding-intron (ENSMUSG00000029217.16, intron 1 of 18) -11550 ENSMUSG00000029217.16 ENSMUSG00000029217 ENSMUST00000202547 Tec protein_coding Interval_72902 chr17 33089264 33089832 + 0 NA promoter-TSS (ENSMUSG00000067424.13) protein_coding-promoter-TSS (ENSMUSG00000067424.13) -16 ENSMUSG00000067424.13 ENSMUSG00000067424 ENSMUST00000140829 Zfp563 protein_coding Interval_105169 chr3 83110259 83111693 + 0 NA Intergenic Intergenic -16972 ENSMUSG00000102692.1 ENSMUSG00000102692 ENSMUST00000191829 Dchs2 protein_coding Interval_71631 chr17 24988323 24988518 + 0 NA intron (ENSMUSG00000038002.9, intron 6 of 20) protein_coding-intron (ENSMUSG00000038002.9, intron 6 of 20) 27368 ENSMUSG00000038002.9 ENSMUSG00000038002 ENSMUST00000233169 Cramp1l protein_coding Interval_99722 chr2 164506537 164508665 + 0 NA exon (ENSMUSG00000017721.15, exon 12 of 12) protein_coding-exon (ENSMUSG00000017721.15, exon 12 of 12) 10040 ENSMUSG00000017721.15 ENSMUSG00000017721 ENSMUST00000131976 Pigt protein_coding Interval_16198 chr10 61394617 61395178 + 0 NA Intergenic Intergenic -13849 ENSMUSG00000112875.1 ENSMUSG00000112875 ENSMUST00000219196 Gm48074 TEC Interval_53579 chr14 59550775 59552346 + 0 NA intron (ENSMUSG00000021981.10, intron 10 of 10) protein_coding-intron (ENSMUSG00000021981.10, intron 10 of 10) 46379 ENSMUSG00000021982.14 ENSMUSG00000021982 ENSMUST00000223842 Cdadc1 protein_coding Interval_91020 chr2 34406493 34407477 + 0 NA promoter-TSS (ENSMUSG00000038696.14) protein_coding-promoter-TSS (ENSMUSG00000038696.14) 113 ENSMUSG00000038696.14 ENSMUSG00000038696 ENSMUST00000129633 Mapkap1 protein_coding Interval_8384 chr1 138592227 138592997 + 0 NA intron (ENSMUSG00000026393.10, intron 1 of 9) protein_coding-intron (ENSMUSG00000026393.10, intron 1 of 7) -21256 ENSMUSG00000102448.1 ENSMUSG00000102448 ENSMUST00000191656 Gm37101 TEC Interval_169716 chr9 100617053 100619011 + 0 NA intron (ENSMUSG00000037286.15, intron 1 of 3) protein_coding-intron (ENSMUSG00000037286.15, intron 1 of 3) 7933 ENSMUSG00000086225.1 ENSMUSG00000086225 ENSMUST00000118688 Gm8661 processed_pseudogene Interval_162572 chr9 4775386 4775853 + 0 NA intron (ENSMUSG00000025892.16, intron 2 of 15) protein_coding-intron (ENSMUSG00000025892.16, intron 3 of 16) 19900 ENSMUSG00000025892.16 ENSMUSG00000025892 ENSMUST00000163309 Gria4 protein_coding Interval_72397 chr17 29600178 29600532 + 0 NA intron (ENSMUSG00000042203.8, intron 12 of 12) protein_coding-intron (ENSMUSG00000042203.8, intron 12 of 12) -4050 ENSMUSG00000089900.2 ENSMUSG00000089900 ENSMUST00000159875 Tbc1d22bos antisense Interval_128523 chr5 113813548 113814100 + 0 NA Intergenic Intergenic -3401 ENSMUSG00000104972.1 ENSMUSG00000104972 ENSMUST00000198920 Gm19931 processed_pseudogene Interval_84373 chr19 10448103 10448301 + 0 NA intron (ENSMUSG00000024743.16, intron 12 of 12) protein_coding-intron (ENSMUSG00000024743.16, intron 8 of 8) 8305 ENSMUSG00000118310.1 ENSMUSG00000118310 ENSMUST00000238123 Gm50268 TEC Interval_88804 chr2 11299004 11299496 + 0 NA intron (ENSMUSG00000026778.13, intron 9 of 10) protein_coding-intron (ENSMUSG00000026778.13, intron 16 of 17) 20624 ENSMUSG00000102196.1 ENSMUSG00000102196 ENSMUST00000195716 Gm38171 lincRNA Interval_126470 chr5 88764564 88765671 + 0 NA TTS (ENSMUSG00000006262.15) protein_coding-TTS (ENSMUSG00000006262.15) -4242 ENSMUSG00000029366.10 ENSMUSG00000029366 ENSMUST00000196967 Dck protein_coding Interval_21568 chr10 130054470 130054654 + 0 NA Intergenic Intergenic -16648 ENSMUSG00000058251.3 ENSMUSG00000058251 ENSMUST00000080460 Olfr822 protein_coding Interval_84784 chr19 16625476 16626392 + 0 NA intron (ENSMUSG00000046230.11, intron 2 of 6) protein_coding-intron (ENSMUSG00000046230.11, intron 68 of 71) 14684 ENSMUSG00000046230.11 ENSMUSG00000046230 ENSMUST00000225764 Vps13a protein_coding Interval_29991 chr11 88575965 88576886 + 0 NA intron (ENSMUSG00000069769.13, intron 1 of 5) protein_coding-intron (ENSMUSG00000069769.13, intron 6 of 13) 13722 ENSMUSG00000069769.13 ENSMUSG00000069769 ENSMUST00000126293 Msi2 protein_coding Interval_18979 chr10 93539756 93540841 + 0 NA promoter-TSS (ENSMUSG00000015890.2) protein_coding-promoter-TSS (ENSMUSG00000015890.2) -265 ENSMUSG00000015890.2 ENSMUSG00000015890 ENSMUST00000016034 Amdhd1 protein_coding Interval_45363 chr13 54664022 54664480 + 0 NA TTS (ENSMUSG00000025873.16) protein_coding-TTS (ENSMUSG00000025873.16) 23557 ENSMUSG00000034928.16 ENSMUSG00000034928 ENSMUST00000150626 Rnf44 protein_coding Interval_112438 chr4 41274520 41276144 + 0 NA promoter-TSS (ENSMUSG00000028433.14) protein_coding-promoter-TSS (ENSMUSG00000028433.14) 22715 ENSMUSG00000081866.1 ENSMUSG00000081866 ENSMUST00000118435 Gm12401 processed_pseudogene Interval_107923 chr3 116859047 116862069 + 0 NA intron (ENSMUSG00000033386.10, intron 1 of 4) protein_coding-intron (ENSMUSG00000033386.10, intron 1 of 16) 991 ENSMUSG00000033386.10 ENSMUSG00000033386 ENSMUST00000199030 Frrs1 protein_coding Interval_1363 chr1 20985752 20986627 + 0 NA intron (ENSMUSG00000041809.5, intron 9 of 10) protein_coding-intron (ENSMUSG00000041809.5, intron 9 of 10) 34563 ENSMUSG00000041809.5 ENSMUSG00000041809 ENSMUST00000038447 Efhc1 protein_coding Interval_92725 chr2 64277570 64277790 + 0 NA Intergenic Intergenic 116180 ENSMUSG00000087702.1 ENSMUSG00000087702 ENSMUST00000142353 Gm13575 lincRNA Interval_17084 chr10 71269232 71269448 + 0 NA intron (ENSMUSG00000019927.6, intron 1 of 3) protein_coding-intron (ENSMUSG00000019927.6, intron 1 of 6) -12452 ENSMUSG00000019927.6 ENSMUSG00000019927 ENSMUST00000144231 Ube2d1 protein_coding Interval_135403 chr6 39106751 39107012 + 0 NA intron (ENSMUSG00000038507.6, intron 3 of 11) protein_coding-intron (ENSMUSG00000038507.6, intron 3 of 11) -11592 ENSMUSG00000073144.4 ENSMUSG00000073144 ENSMUST00000146981 4930599N23Rik antisense Interval_113840 chr4 59261296 59262446 + 0 NA intron (ENSMUSG00000086952.1, intron 2 of 2) lincRNA-intron (ENSMUSG00000086952.1, intron 2 of 2) 1820 ENSMUSG00000086952.1 ENSMUSG00000086952 ENSMUST00000124589 Gm12596 lincRNA Interval_5423 chr1 88675498 88675712 + 0 NA intron (ENSMUSG00000049866.12, intron 1 of 2) protein_coding-intron (ENSMUSG00000049866.12, intron 1 of 2) 19297 ENSMUSG00000100367.1 ENSMUSG00000100367 ENSMUST00000186042 Gm29336 lincRNA Interval_18460 chr10 86302576 86303238 + 0 NA promoter-TSS (ENSMUSG00000020044.13) protein_coding-promoter-TSS (ENSMUSG00000020044.13) 2353 ENSMUSG00000020044.13 ENSMUSG00000020044 ENSMUST00000132307 Timp3 protein_coding Interval_132515 chr5 145659256 145659697 + 0 NA Intergenic Intergenic -25483 ENSMUSG00000106040.1 ENSMUSG00000106040 ENSMUST00000196626 Cyp3a63-ps unprocessed_pseudogene Interval_129214 chr5 118244750 118245870 + 0 NA promoter-TSS (ENSMUSG00000032840.7) protein_coding-promoter-TSS (ENSMUSG00000032840.7) 83 ENSMUSG00000032840.7 ENSMUSG00000032840 ENSMUST00000049138 2410131K14Rik protein_coding Interval_52886 chr14 51850941 51852464 + 0 NA Intergenic Intergenic -1997 ENSMUSG00000062148.6 ENSMUSG00000062148 ENSMUST00000074477 Ear6 protein_coding Interval_98617 chr2 153592548 153593548 + 0 NA Intergenic Intergenic 39683 ENSMUSG00000056941.17 ENSMUSG00000056941 ENSMUST00000109782 Commd7 protein_coding Interval_172189 chrX 8314751 8315226 + 0 NA Intergenic Intergenic -12436 ENSMUSG00000068219.8 ENSMUSG00000068219 ENSMUST00000103003 Ssxb10 protein_coding Interval_37833 chr12 72360637 72360845 + 0 NA intron (ENSMUSG00000021087.18, intron 1 of 8) protein_coding-intron (ENSMUSG00000021087.18, intron 1 of 8) -81294 ENSMUSG00000021090.16 ENSMUSG00000021090 ENSMUST00000221282 Lrrc9 protein_coding Interval_138309 chr6 87095201 87095531 + 0 NA Intergenic Intergenic -9447 ENSMUSG00000090891.3 ENSMUSG00000090891 ENSMUST00000205257 D6Ertd527e protein_coding Interval_174284 chrX 143262618 143263076 + 0 NA Intergenic Intergenic -78310 ENSMUSG00000083089.1 ENSMUSG00000083089 ENSMUST00000119663 Gm4760 processed_pseudogene Interval_99717 chr2 164460641 164461713 + 0 NA promoter-TSS (ENSMUSG00000085760.1) antisense-promoter-TSS (ENSMUSG00000085760.1) 210 ENSMUSG00000090996.1 ENSMUSG00000090996 ENSMUST00000164863 Gm20458 protein_coding Interval_132671 chr5 147060136 147060595 + 0 NA intron (ENSMUSG00000016520.7, intron 1 of 9) protein_coding-intron (ENSMUSG00000016520.7, intron 1 of 9) -17199 ENSMUSG00000029642.11 ENSMUSG00000029642 ENSMUST00000196288 Polr1d protein_coding Interval_99883 chr2 165571283 165571868 + 0 NA Intergenic Intergenic 30212 ENSMUSG00000100796.1 ENSMUSG00000100796 ENSMUST00000187099 Gm28163 lincRNA Interval_91936 chr2 51769102 51769868 + 0 NA Intergenic Intergenic -37476 ENSMUSG00000085014.1 ENSMUSG00000085014 ENSMUST00000143870 Gm13490 lincRNA Interval_26411 chr11 57699536 57699765 + 0 NA intron (ENSMUSG00000020520.14, intron 1 of 2) protein_coding-intron (ENSMUSG00000020520.14, intron 1 of 11) -41650 ENSMUSG00000077155.1 ENSMUSG00000077155 ENSMUST00000103967 Gm24582 snRNA Interval_174596 chrX 159594345 159594711 + 0 NA Intergenic Intergenic 6063 ENSMUSG00000083906.1 ENSMUSG00000083906 ENSMUST00000119345 Gm15186 processed_pseudogene Interval_138141 chr6 85431392 85432543 + 0 NA promoter-TSS (ENSMUSG00000033706.13) protein_coding-promoter-TSS (ENSMUSG00000033706.13) -106 ENSMUSG00000033706.13 ENSMUSG00000033706 ENSMUST00000153749 Smyd5 protein_coding Interval_102691 chr3 30087793 30088048 + 0 NA intron (ENSMUSG00000027684.16, intron 2 of 2) protein_coding-intron (ENSMUSG00000027684.16, intron 1 of 14) 70392 ENSMUSG00000085702.8 ENSMUSG00000085702 ENSMUST00000173827 Mecomos antisense Interval_122811 chr5 25687885 25688686 + 0 NA exon (ENSMUSG00000106241.1, exon 1 of 1) TEC-exon (ENSMUSG00000106241.1, exon 1 of 1) 1110 ENSMUSG00000106241.1 ENSMUSG00000106241 ENSMUST00000196083 Gm43143 TEC Interval_27827 chr11 70246507 70247729 + 0 NA intron (ENSMUSG00000000320.10, intron 9 of 13) protein_coding-intron (ENSMUSG00000000320.10, intron 9 of 13) -7315 ENSMUSG00000040904.10 ENSMUSG00000040904 ENSMUST00000176268 Gm21988 protein_coding Interval_82345 chr18 71548698 71549196 + 0 NA intron (ENSMUSG00000060534.16, intron 10 of 28) protein_coding-intron (ENSMUSG00000060534.16, intron 10 of 28) -641296 ENSMUSG00000118271.1 ENSMUSG00000118271 ENSMUST00000236972 Gm50262 processed_pseudogene Interval_57017 chr15 4312955 4314023 + 0 NA Intergenic Intergenic -62002 ENSMUSG00000049148.8 ENSMUSG00000049148 ENSMUST00000061925 Plcxd3 protein_coding Interval_104129 chr3 58882741 58883453 + 0 NA intron (ENSMUSG00000043850.15, intron 1 of 3) protein_coding-intron (ENSMUSG00000043850.15, intron 1 of 2) -17300 ENSMUSG00000043850.15 ENSMUSG00000043850 ENSMUST00000161419 Clrn1 protein_coding Interval_94458 chr2 91368539 91370850 + 0 NA intron (ENSMUSG00000040591.18, intron 3 of 3) protein_coding-intron (ENSMUSG00000040591.18, intron 3 of 8) -25505 ENSMUSG00000081248.1 ENSMUSG00000081248 ENSMUST00000120422 Gm13787 processed_pseudogene Interval_30912 chr11 97191919 97192710 + 0 NA Intergenic Intergenic -26914 ENSMUSG00000001440.5 ENSMUSG00000001440 ENSMUST00000153727 Kpnb1 protein_coding Interval_160637 chr8 111248769 111249041 + 0 NA intron (ENSMUSG00000003316.14, intron 1 of 25) protein_coding-intron (ENSMUSG00000003316.14, intron 1 of 24) 10311 ENSMUSG00000003316.14 ENSMUSG00000003316 ENSMUST00000003404 Glg1 protein_coding Interval_40409 chr12 104692941 104693186 + 0 NA intron (ENSMUSG00000041415.10, intron 18 of 20) protein_coding-intron (ENSMUSG00000041415.10, intron 24 of 26) 28989 ENSMUSG00000041415.10 ENSMUSG00000041415 ENSMUST00000222002 Dicer1 protein_coding Interval_139264 chr6 97674879 97675128 + 0 NA Intergenic Intergenic -55436 ENSMUSG00000094510.1 ENSMUSG00000094510 ENSMUST00000180099 Gm24565 snRNA Interval_57519 chr15 12031793 12033140 + 0 NA promoter-TSS (ENSMUSG00000107344.1) processed_pseudogene-promoter-TSS (ENSMUSG00000107344.1) -539 ENSMUSG00000107344.1 ENSMUSG00000107344 ENSMUST00000201323 Gm2559 processed_pseudogene Interval_56057 chr14 105193316 105194879 + 0 NA Intergenic Intergenic 7002 ENSMUSG00000115247.1 ENSMUSG00000115247 ENSMUST00000226852 Gm6201 processed_pseudogene Interval_129632 chr5 121429074 121429360 + 0 NA exon (ENSMUSG00000029616.9, exon 3 of 3) protein_coding-exon (ENSMUSG00000029616.9, exon 3 of 3) -10786 ENSMUSG00000042719.17 ENSMUSG00000042719 ENSMUST00000174322 Naa25 protein_coding Interval_168547 chr9 83447086 83448343 + 0 NA exon (ENSMUSG00000103044.1, exon 1 of 1) TEC-exon (ENSMUSG00000103044.1, exon 1 of 1) 155 ENSMUSG00000103044.1 ENSMUSG00000103044 ENSMUST00000193663 Gm37307 TEC Interval_39133 chr12 85350767 85351019 + 0 NA promoter-TSS (ENSMUSG00000021248.9) protein_coding-promoter-TSS (ENSMUSG00000021248.9) -5691 ENSMUSG00000113072.1 ENSMUSG00000113072 ENSMUST00000220964 Gm47820 processed_pseudogene Interval_71473 chr17 24009486 24009975 + 0 NA promoter-TSS (ENSMUSG00000098964.1) miRNA-promoter-TSS (ENSMUSG00000098964.1) -302 ENSMUSG00000098964.1 ENSMUSG00000098964 ENSMUST00000185003 Gm27700 miRNA Interval_149973 chr7 103966725 103967392 + 0 NA Intergenic Intergenic -4094 ENSMUSG00000094520.4 ENSMUSG00000094520 ENSMUST00000098185 Olfr635 protein_coding Interval_111714 chr4 26496511 26497157 + 0 NA Intergenic Intergenic 4825 ENSMUSG00000081985.1 ENSMUSG00000081985 ENSMUST00000120523 Gng2-ps1 processed_pseudogene Interval_17257 chr10 75341801 75342496 + 0 NA Intergenic Intergenic -2324 ENSMUSG00000112471.1 ENSMUSG00000112471 ENSMUST00000218467 Gm5779 transcribed_processed_pseudogene Interval_109081 chr3 135623907 135624222 + 0 NA intron (ENSMUSG00000028163.17, intron 7 of 24) protein_coding-intron (ENSMUSG00000028163.17, intron 7 of 24) -20205 ENSMUSG00000028163.17 ENSMUSG00000028163 ENSMUST00000196246 Nfkb1 protein_coding Interval_13089 chr10 11269349 11269798 + 0 NA intron (ENSMUSG00000097007.3, intron 5 of 5) bidirectional_promoter_lncRNA-intron (ENSMUSG00000097007.3, intron 1 of 1) 11648 ENSMUSG00000097007.3 ENSMUSG00000097007 ENSMUST00000181688 4930432B10Rik bidirectional_promoter_lncRNA Interval_167456 chr9 69484756 69484988 + 0 NA intron (ENSMUSG00000032231.14, intron 3 of 8) protein_coding-intron (ENSMUSG00000032231.14, intron 7 of 12) -1911 ENSMUSG00000032231.14 ENSMUSG00000032231 ENSMUST00000154591 Anxa2 protein_coding Interval_7988 chr1 135076759 135078092 + 0 NA intron (ENSMUSG00000042793.13, intron 1 of 17) protein_coding-intron (ENSMUSG00000042793.13, intron 1 of 17) -31536 ENSMUSG00000097988.1 ENSMUSG00000097988 ENSMUST00000182275 Gm10535 antisense Interval_101564 chr3 6173726 6174508 + 0 NA Intergenic Intergenic -6293 ENSMUSG00000103733.1 ENSMUSG00000103733 ENSMUST00000194870 Gm6162 processed_pseudogene Interval_91152 chr2 35490643 35491437 + 0 NA TTS (ENSMUSG00000081421.1) processed_pseudogene-TTS (ENSMUSG00000081421.1) 479 ENSMUSG00000081421.1 ENSMUSG00000081421 ENSMUST00000121664 Gm13445 processed_pseudogene Interval_119970 chr4 141160341 141161215 + 0 NA intron (ENSMUSG00000028920.9, intron 1 of 3) protein_coding-intron (ENSMUSG00000028920.9, intron 1 of 9) 12856 ENSMUSG00000028920.9 ENSMUSG00000028920 ENSMUST00000146768 Fbxo42 protein_coding Interval_169876 chr9 102689507 102691186 + 0 NA Intergenic Intergenic -2539 ENSMUSG00000099491.1 ENSMUSG00000099491 ENSMUST00000185478 4930533D04Rik lincRNA Interval_166694 chr9 61999610 62000542 + 0 NA intron (ENSMUSG00000032278.11, intron 1 of 4) protein_coding-intron (ENSMUSG00000032278.11, intron 1 of 7) -20518 ENSMUSG00000088743.1 ENSMUSG00000088743 ENSMUST00000158118 Gm23221 misc_RNA Interval_79920 chr18 35930383 35931112 + 0 NA Intergenic Intergenic 7452 ENSMUSG00000118122.1 ENSMUSG00000118122 ENSMUST00000235914 Gm50405 lincRNA Interval_43250 chr13 27216840 27217063 + 0 NA Intergenic Intergenic 17598 ENSMUSG00000017922.14 ENSMUSG00000017922 ENSMUST00000178072 Prl3c1 protein_coding Interval_85257 chr19 24195888 24198323 + 0 NA intron (ENSMUSG00000024812.11, intron 1 of 23) protein_coding-intron (ENSMUSG00000024812.11, intron 1 of 22) 43035 ENSMUSG00000118371.1 ENSMUSG00000118371 ENSMUST00000237530 Gm50308 processed_pseudogene Interval_167010 chr9 64489094 64489350 + 0 NA intron (ENSMUSG00000036466.17, intron 1 of 24) protein_coding-intron (ENSMUSG00000036466.17, intron 1 of 24) 103596 ENSMUSG00000036466.17 ENSMUSG00000036466 ENSMUST00000153934 Megf11 protein_coding Interval_116157 chr4 108217265 108219777 + 0 NA promoter-TSS (ENSMUSG00000034645.14) protein_coding-promoter-TSS (ENSMUSG00000034645.14) -599 ENSMUSG00000034645.14 ENSMUSG00000034645 ENSMUST00000106690 Zyg11a protein_coding Interval_107939 chr3 117042164 117042386 + 0 NA Intergenic Intergenic 35490 ENSMUSG00000028009.7 ENSMUSG00000028009 ENSMUST00000029642 1700061I17Rik lincRNA Interval_79938 chr18 36077186 36077599 + 0 NA intron (ENSMUSG00000060275.14, intron 1 of 9) protein_coding-intron (ENSMUSG00000060275.14, intron 2 of 7) -8767 ENSMUSG00000060275.14 ENSMUSG00000060275 ENSMUST00000115705 Nrg2 protein_coding Interval_88892 chr2 12205524 12206586 + 0 NA intron (ENSMUSG00000026768.10, intron 13 of 30) protein_coding-intron (ENSMUSG00000026768.10, intron 13 of 29) -76313 ENSMUSG00000104174.1 ENSMUSG00000104174 ENSMUST00000192947 Gm37701 TEC Interval_94724 chr2 93784793 93786687 + 0 NA intron (ENSMUSG00000027198.16, intron 7 of 14) protein_coding-intron (ENSMUSG00000027198.16, intron 7 of 13) -8830 ENSMUSG00000081353.2 ENSMUSG00000081353 ENSMUST00000119441 Gm13818 processed_pseudogene Interval_113307 chr4 53353585 53353987 + 0 NA Intergenic Intergenic 45560 ENSMUSG00000083735.1 ENSMUSG00000083735 ENSMUST00000119750 Gm12495 processed_pseudogene Interval_121060 chr4 152517980 152518971 + 0 NA TTS (ENSMUSG00000039577.17) protein_coding-TTS (ENSMUSG00000039577.17) 40297 ENSMUSG00000039577.17 ENSMUSG00000039577 ENSMUST00000123635 Nphp4 protein_coding Interval_104612 chr3 68805363 68806153 + 0 NA Intergenic Intergenic -40321 ENSMUSG00000102853.1 ENSMUSG00000102853 ENSMUST00000195818 Gm7270 processed_pseudogene Interval_157382 chr8 69995846 69997128 + 0 NA promoter-TSS (ENSMUSG00000036180.15) protein_coding-promoter-TSS (ENSMUSG00000036180.15) -103 ENSMUSG00000036180.15 ENSMUSG00000036180 ENSMUST00000211960 Gatad2a protein_coding Interval_121974 chr5 12859813 12860030 + 0 NA Intergenic Intergenic -80449 ENSMUSG00000094310.1 ENSMUSG00000094310 ENSMUST00000180047 Gm23243 miRNA Interval_174114 chrX 135569402 135569629 + 0 NA Intergenic Intergenic 20305 ENSMUSG00000096119.1 ENSMUSG00000096119 ENSMUST00000178856 Gm6228 transcribed_unprocessed_pseudogene Interval_100352 chr2 168582800 168583728 + 0 NA intron (ENSMUSG00000027544.16, intron 1 of 6) protein_coding-intron (ENSMUSG00000027544.16, intron 1 of 6) 18391 ENSMUSG00000027544.16 ENSMUSG00000027544 ENSMUST00000138546 Nfatc2 protein_coding Interval_130405 chr5 127357884 127358286 + 0 NA intron (ENSMUSG00000034324.16, intron 1 of 8) protein_coding-intron (ENSMUSG00000034324.16, intron 1 of 8) 49068 ENSMUSG00000104971.1 ENSMUSG00000104971 ENSMUST00000196548 9430087B13Rik TEC Interval_8445 chr1 139454052 139455546 + 0 NA promoter-TSS (ENSMUSG00000033952.14) protein_coding-promoter-TSS (ENSMUSG00000033952.14) 27 ENSMUSG00000033952.14 ENSMUSG00000033952 ENSMUST00000196272 Aspm protein_coding Interval_119879 chr4 140647798 140649186 + 0 NA intron (ENSMUSG00000040964.16, intron 1 of 27) protein_coding-intron (ENSMUSG00000040964.16, intron 1 of 27) -31261 ENSMUSG00000086159.1 ENSMUSG00000086159 ENSMUST00000141469 Gm13025 lincRNA Interval_122336 chr5 21443446 21444047 + 0 NA intron (ENSMUSG00000047221.5, intron 2 of 5) protein_coding-intron (ENSMUSG00000047221.5, intron 4 of 7) 18745 ENSMUSG00000047221.5 ENSMUSG00000047221 ENSMUST00000146056 Fam185a protein_coding Interval_144261 chr7 24100359 24100972 + 0 NA intron (ENSMUSG00000057101.8, intron 3 of 4) protein_coding-intron (ENSMUSG00000057101.8, intron 3 of 4) 15935 ENSMUSG00000108703.1 ENSMUSG00000108703 ENSMUST00000136923 Gm44793 antisense Interval_166903 chr9 63832746 63833466 + 0 NA Intergenic Intergenic -31309 ENSMUSG00000111137.1 ENSMUSG00000111137 ENSMUST00000215986 Gm2553 processed_pseudogene Interval_81163 chr18 55238609 55238850 + 0 NA Intergenic Intergenic 58889 ENSMUSG00000088227.1 ENSMUSG00000088227 ENSMUST00000157602 Gm22597 snRNA Interval_112161 chr4 35041892 35042674 + 0 NA intron (ENSMUSG00000073910.10, intron 2 of 3) protein_coding-intron (ENSMUSG00000073910.10, intron 2 of 3) 80063 ENSMUSG00000086792.1 ENSMUSG00000086792 ENSMUST00000144419 Gm12364 antisense Interval_169513 chr9 98645815 98646425 + 0 NA Intergenic Intergenic -44475 ENSMUSG00000032459.9 ENSMUSG00000032459 ENSMUST00000190150 Mrps22 protein_coding Interval_127458 chr5 104076366 104076873 + 0 NA exon (ENSMUSG00000091034.8, exon 2 of 10) protein_coding-exon (ENSMUSG00000091034.8, exon 2 of 10) 973 ENSMUSG00000091034.8 ENSMUSG00000091034 ENSMUST00000178967 Gm17660 protein_coding Interval_35844 chr12 31174886 31175648 + 0 NA intron (ENSMUSG00000095953.3, intron 11 of 20) processed_transcript-intron (ENSMUSG00000095953.3, intron 3 of 3) 24223 ENSMUSG00000111944.1 ENSMUSG00000111944 ENSMUST00000218516 Gm18024 processed_pseudogene Interval_99407 chr2 160705387 160705648 + 0 NA intron (ENSMUSG00000070544.6, intron 13 of 20) protein_coding-intron (ENSMUSG00000070544.6, intron 13 of 20) 19848 ENSMUSG00000070544.6 ENSMUSG00000070544 ENSMUST00000150039 Top1 protein_coding Interval_7760 chr1 133485686 133486614 + 0 NA Intergenic Intergenic -43329 ENSMUSG00000101004.1 ENSMUSG00000101004 ENSMUST00000188004 Gm8596 processed_pseudogene Interval_48456 chr13 99152207 99153126 + 0 NA Intergenic Intergenic -32157 ENSMUSG00000050919.9 ENSMUSG00000050919 ENSMUST00000056558 Zfp366 protein_coding Interval_169801 chr9 101611208 101611816 + 0 NA Intergenic Intergenic 146193 ENSMUSG00000111696.1 ENSMUSG00000111696 ENSMUST00000215480 Gm47932 processed_pseudogene Interval_97965 chr2 146220969 146223738 + 0 NA exon (ENSMUSG00000068154.5, exon 1 of 1) protein_coding-exon (ENSMUSG00000068154.5, exon 1 of 1) 432 ENSMUSG00000068154.5 ENSMUSG00000068154 ENSMUST00000089257 Insm1 protein_coding Interval_31947 chr11 104010580 104011001 + 0 NA Intergenic Intergenic 31201 ENSMUSG00000062421.13 ENSMUSG00000062421 ENSMUST00000154089 Arf2 protein_coding Interval_4642 chr1 75613111 75613580 + 0 NA Intergenic Intergenic -11309 ENSMUSG00000082528.1 ENSMUSG00000082528 ENSMUST00000120832 Gm15182 processed_pseudogene Interval_98594 chr2 153475572 153475767 + 0 NA intron (ENSMUSG00000061411.12, intron 2 of 3) protein_coding-intron (ENSMUSG00000061411.12, intron 3 of 10) 4057 ENSMUSG00000061411.12 ENSMUSG00000061411 ENSMUST00000156786 Nol4l protein_coding Interval_69005 chr16 90079384 90079637 + 0 NA intron (ENSMUSG00000002489.16, intron 1 of 11) protein_coding-intron (ENSMUSG00000002489.16, intron 1 of 11) -10473 ENSMUSG00000116536.1 ENSMUSG00000116536 ENSMUST00000232386 Gm2805 processed_pseudogene Interval_140785 chr6 121343192 121343671 + 0 NA promoter-TSS (ENSMUSG00000030109.15) protein_coding-promoter-TSS (ENSMUSG00000030109.15) -13389 ENSMUSG00000030109.15 ENSMUSG00000030109 ENSMUST00000170339 Slc6a12 protein_coding Interval_80171 chr18 38004332 38004607 + 0 NA Intergenic Intergenic -5736 ENSMUSG00000024451.9 ENSMUSG00000024451 ENSMUST00000236134 Arap3 protein_coding Interval_96447 chr2 123014789 123015209 + 0 NA Intergenic Intergenic 243281 ENSMUSG00000005803.14 ENSMUSG00000005803 ENSMUST00000176343 Sqor protein_coding Interval_132327 chr5 144207310 144208469 + 0 NA intron (ENSMUSG00000066621.12, intron 1 of 2) protein_coding-intron (ENSMUSG00000066621.12, intron 11 of 24) 15634 ENSMUSG00000066621.12 ENSMUSG00000066621 ENSMUST00000196360 Tecpr1 protein_coding Interval_58159 chr15 30071445 30072768 + 0 NA Intergenic Intergenic -19550 ENSMUSG00000065726.1 ENSMUSG00000065726 ENSMUST00000083792 Gm26163 snoRNA Interval_129162 chr5 117928684 117929021 + 0 NA intron (ENSMUSG00000029361.18, intron 19 of 27) protein_coding-intron (ENSMUSG00000029361.18, intron 20 of 28) 10666 ENSMUSG00000098072.1 ENSMUSG00000098072 ENSMUST00000182216 Gm26995 antisense Interval_15919 chr10 59289222 59289487 + 0 NA Intergenic Intergenic -34014 ENSMUSG00000019916.14 ENSMUSG00000019916 ENSMUST00000105466 P4ha1 protein_coding Interval_71669 chr17 25272486 25274583 + 0 NA promoter-TSS (ENSMUSG00000015120.15) protein_coding-promoter-TSS (ENSMUSG00000015120.15) -7665 ENSMUSG00000015120.15 ENSMUSG00000015120 ENSMUST00000172462 Ube2i protein_coding Interval_50412 chr14 12623643 12624327 + 0 NA intron (ENSMUSG00000054423.14, intron 3 of 28) protein_coding-intron (ENSMUSG00000054423.14, intron 3 of 28) 5317 ENSMUSG00000114453.1 ENSMUSG00000114453 ENSMUST00000225784 Gm17805 processed_pseudogene Interval_91775 chr2 49473648 49474490 + 0 NA intron (ENSMUSG00000069495.12, intron 1 of 13) protein_coding-intron (ENSMUSG00000069495.12, intron 1 of 13) -54806 ENSMUSG00000069495.12 ENSMUSG00000069495 ENSMUST00000152485 Epc2 protein_coding Interval_110856 chr4 9027633 9028516 + 0 NA Intergenic Intergenic 86815 ENSMUSG00000083786.1 ENSMUSG00000083786 ENSMUST00000119493 Rps18-ps2 processed_pseudogene Interval_123164 chr5 30214117 30214480 + 0 NA Intergenic Intergenic -9711 ENSMUSG00000067642.11 ENSMUSG00000067642 ENSMUST00000135322 Adgrf3 protein_coding Interval_146874 chr7 54286157 54286351 + 0 NA Intergenic Intergenic -72869 ENSMUSG00000092856.2 ENSMUSG00000092856 ENSMUST00000175115 Gm25956 miRNA Interval_55447 chr14 87425103 87425419 + 0 NA intron (ENSMUSG00000022019.16, intron 1 of 11) protein_coding-intron (ENSMUSG00000022019.16, intron 1 of 13) -3089 ENSMUSG00000115564.1 ENSMUSG00000115564 ENSMUST00000226140 Gm49199 TEC Interval_161716 chr8 122302407 122302628 + 0 NA intron (ENSMUSG00000049577.15, intron 1 of 9) protein_coding-intron (ENSMUSG00000049577.15, intron 1 of 9) -32114 ENSMUSG00000049577.15 ENSMUSG00000049577 ENSMUST00000212315 Zfpm1 protein_coding Interval_7634 chr1 132667963 132668243 + 0 NA intron (ENSMUSG00000026442.14, intron 1 of 2) protein_coding-intron (ENSMUSG00000026442.14, intron 1 of 26) -43591 ENSMUSG00000026442.14 ENSMUSG00000026442 ENSMUST00000189219 Nfasc protein_coding Interval_130384 chr5 127204863 127205594 + 0 NA Intergenic Intergenic -4131 ENSMUSG00000104778.1 ENSMUSG00000104778 ENSMUST00000197873 Gm43476 lincRNA Interval_164241 chr9 33856074 33856345 + 0 NA Intergenic Intergenic -4994 ENSMUSG00000111265.1 ENSMUSG00000111265 ENSMUST00000215702 Gm47784 lincRNA Interval_7490 chr1 131811576 131812141 + 0 NA promoter-TSS (ENSMUSG00000042251.12) protein_coding-promoter-TSS (ENSMUSG00000042251.12) -272 ENSMUSG00000042251.12 ENSMUSG00000042251 ENSMUST00000132450 Pm20d1 protein_coding Interval_90417 chr2 30335040 30337095 + 0 NA intron (ENSMUSG00000052533.14, intron 30 of 43) protein_coding-intron (ENSMUSG00000052533.14, intron 30 of 43) -12081 ENSMUSG00000084892.1 ENSMUSG00000084892 ENSMUST00000141035 Gm14471 processed_transcript Interval_84177 chr19 8496230 8498715 + 0 NA intron (ENSMUSG00000110298.1, intron 4 of 6) transcribed_unprocessed_pseudogene-intron (ENSMUSG00000110298.1, intron 4 of 6) 44326 ENSMUSG00000110298.1 ENSMUSG00000110298 ENSMUST00000211159 Gm8189 transcribed_unprocessed_pseudogene Interval_70835 chr17 15198305 15199346 + 0 NA Intergenic Intergenic 46666 ENSMUSG00000116655.1 ENSMUSG00000116655 ENSMUST00000231330 Gm35455 lincRNA Interval_137305 chr6 71208636 71209378 + 0 NA Intergenic Intergenic 7867 ENSMUSG00000055027.17 ENSMUSG00000055027 ENSMUST00000173297 Smyd1 protein_coding Interval_44748 chr13 48207826 48208413 + 0 NA intron (ENSMUSG00000114457.1, intron 2 of 3) antisense-intron (ENSMUSG00000097622.2, intron 1 of 2) 29132 ENSMUSG00000114457.1 ENSMUSG00000114457 ENSMUST00000225626 Gm36346 lincRNA Interval_131827 chr5 140163707 140164119 + 0 NA intron (ENSMUSG00000029554.15, intron 11 of 16) protein_coding-intron (ENSMUSG00000029554.15, intron 11 of 17) 11005 ENSMUSG00000029554.15 ENSMUSG00000029554 ENSMUST00000132832 Mad1l1 protein_coding Interval_10194 chr1 167021204 167022399 + 0 NA intron (ENSMUSG00000060568.14, intron 1 of 2) protein_coding-intron (ENSMUSG00000060568.14, intron 1 of 2) 20384 ENSMUSG00000060568.14 ENSMUSG00000060568 ENSMUST00000128373 Fam78b protein_coding Interval_126867 chr5 96182924 96184332 + 0 NA Intergenic Intergenic 9688 ENSMUSG00000090468.3 ENSMUSG00000090468 ENSMUST00000048361 Gm2840 processed_pseudogene Interval_123614 chr5 33819643 33821486 + 0 NA promoter-TSS (ENSMUSG00000057406.16) protein_coding-promoter-TSS (ENSMUSG00000057406.16) -37850 ENSMUSG00000005299.6 ENSMUSG00000005299 ENSMUST00000148451 Letm1 protein_coding Interval_131346 chr5 136622829 136623617 + 0 NA Intergenic Intergenic -55733 ENSMUSG00000029705.17 ENSMUSG00000029705 ENSMUST00000177305 Cux1 protein_coding Interval_53201 chr14 55091579 55092635 + 0 NA promoter-TSS (ENSMUSG00000040721.9) protein_coding-promoter-TSS (ENSMUSG00000040721.9) -65 ENSMUSG00000040721.9 ENSMUSG00000040721 ENSMUST00000188534 Zfhx2 protein_coding Interval_19285 chr10 96096859 96097340 + 0 NA Intergenic Intergenic -1094 ENSMUSG00000117008.1 ENSMUSG00000117008 ENSMUST00000233655 Gm49817 unitary_pseudogene Interval_110048 chr3 152758628 152759680 + 0 NA intron (ENSMUSG00000039047.17, intron 9 of 13) protein_coding-intron (ENSMUSG00000039047.17, intron 10 of 11) 22907 ENSMUSG00000090095.1 ENSMUSG00000090095 ENSMUST00000161849 Rpl29-ps1 processed_pseudogene Interval_29631 chr11 85635146 85635344 + 0 NA intron (ENSMUSG00000059439.15, intron 13 of 14) protein_coding-intron (ENSMUSG00000059439.15, intron 23 of 24) 84499 ENSMUSG00000086199.7 ENSMUSG00000086199 ENSMUST00000146806 Bcas3os1 antisense Interval_75747 chr17 70985527 70986441 + 0 NA intron (ENSMUSG00000117098.1, intron 1 of 3) protein_coding-intron (ENSMUSG00000034868.9, intron 1 of 3) -7452 ENSMUSG00000034868.9 ENSMUSG00000034868 ENSMUST00000131820 Myl12b protein_coding Interval_19926 chr10 111290472 111292400 + 0 NA intron (ENSMUSG00000020189.15, intron 22 of 23) protein_coding-intron (ENSMUSG00000020189.15, intron 21 of 22) -7243 ENSMUSG00000035759.4 ENSMUSG00000035759 ENSMUST00000040454 Bbs10 protein_coding Interval_169604 chr9 99401070 99401766 + 0 NA promoter-TSS (ENSMUSG00000032470.17) protein_coding-promoter-TSS (ENSMUSG00000032470.17) -6723 ENSMUSG00000032470.17 ENSMUSG00000032470 ENSMUST00000123771 Mras protein_coding Interval_39879 chr12 99340888 99341438 + 0 NA promoter-TSS (ENSMUSG00000033731.9) antisense-promoter-TSS (ENSMUSG00000033731.9) 9 ENSMUSG00000033731.9 ENSMUSG00000033731 ENSMUST00000046994 3300002A11Rik antisense Interval_83784 chr19 4708736 4709445 + 0 NA Intergenic Intergenic -11989 ENSMUSG00000067889.6 ENSMUSG00000067889 ENSMUST00000238162 Sptbn2 protein_coding Interval_53752 chr14 61525707 61526572 + 0 NA exon (ENSMUSG00000115656.1, exon 4 of 4) lincRNA-exon (ENSMUSG00000115656.1, exon 4 of 4) -17588 ENSMUSG00000115802.1 ENSMUSG00000115802 ENSMUST00000226286 Vmn1r-ps136 unprocessed_pseudogene Interval_50974 chr14 21442824 21443416 + 0 NA intron (ENSMUSG00000039197.10, intron 10 of 10) protein_coding-intron (ENSMUSG00000039197.10, intron 10 of 10) -7354 ENSMUSG00000088873.1 ENSMUSG00000088873 ENSMUST00000158248 Gm25864 snRNA Interval_123970 chr5 36928688 36929292 + 0 NA intron (ENSMUSG00000029120.10, intron 3 of 3) protein_coding-intron (ENSMUSG00000029120.10, intron 4 of 8) 18876 ENSMUSG00000106934.1 ENSMUSG00000106934 ENSMUST00000202009 Gm42506 TEC Interval_19778 chr10 108725649 108726185 + 0 NA intron (ENSMUSG00000035864.14, intron 3 of 7) protein_coding-intron (ENSMUSG00000035864.14, intron 3 of 10) -25757 ENSMUSG00000112039.1 ENSMUSG00000112039 ENSMUST00000218023 Gm5136 protein_coding Interval_164197 chr9 32408633 32409972 + 0 NA Intergenic Intergenic 24093 ENSMUSG00000041248.9 ENSMUSG00000041248 ENSMUST00000172015 Kcnj1 protein_coding Interval_172458 chrX 20703722 20704731 + 0 NA intron (ENSMUSG00000031066.10, intron 1 of 20) protein_coding-intron (ENSMUSG00000031066.10, intron 1 of 20) -7599 ENSMUSG00000031066.10 ENSMUSG00000031066 ENSMUST00000149960 Usp11 protein_coding Interval_36763 chr12 53251750 53254276 + 0 NA promoter-TSS (ENSMUSG00000021010.9) protein_coding-promoter-TSS (ENSMUSG00000021010.9) 4856 ENSMUSG00000021010.9 ENSMUSG00000021010 ENSMUST00000223057 Npas3 protein_coding Interval_26563 chr11 58916809 58917535 + 0 NA promoter-TSS (ENSMUSG00000020490.16) protein_coding-promoter-TSS (ENSMUSG00000020490.16) -780 ENSMUSG00000020490.16 ENSMUSG00000020490 ENSMUST00000108818 Btnl10 protein_coding Interval_81301 chr18 57670640 57672267 + 0 NA intron (ENSMUSG00000058925.11, intron 5 of 5) protein_coding-intron (ENSMUSG00000058925.11, intron 6 of 6) -1895 ENSMUSG00000088776.1 ENSMUSG00000088776 ENSMUST00000158151 Gm26038 snRNA Interval_14301 chr10 30655554 30656687 + 0 NA promoter-TSS (ENSMUSG00000039697.16) protein_coding-promoter-TSS (ENSMUSG00000039697.16) -283 ENSMUSG00000039697.16 ENSMUSG00000039697 ENSMUST00000215725 Ncoa7 protein_coding Interval_132658 chr5 146986467 146987274 + 0 NA Intergenic Intergenic -23070 ENSMUSG00000016510.11 ENSMUSG00000016510 ENSMUST00000140526 Mtif3 protein_coding Interval_37071 chr12 57399064 57399260 + 0 NA intron (ENSMUSG00000047022.18, intron 9 of 12) protein_coding-intron (ENSMUSG00000047022.18, intron 8 of 10) 50958 ENSMUSG00000086372.1 ENSMUSG00000086372 ENSMUST00000145464 Gm16246 antisense Interval_141445 chr6 128318271 128319701 + 0 NA Intergenic Intergenic 5629 ENSMUSG00000053173.12 ENSMUSG00000053173 ENSMUST00000118863 Rpl18-ps2 processed_pseudogene Interval_127862 chr5 108312235 108313848 + 0 NA promoter-TSS (ENSMUSG00000106103.1) TEC-promoter-TSS (ENSMUSG00000106103.1) -292 ENSMUSG00000106103.1 ENSMUSG00000106103 ENSMUST00000199082 Gm43081 TEC Interval_159436 chr8 94666170 94667255 + 0 NA promoter-TSS (ENSMUSG00000031776.17) protein_coding-promoter-TSS (ENSMUSG00000031776.17) -753 ENSMUSG00000031776.17 ENSMUSG00000031776 ENSMUST00000212254 Arl2bp protein_coding Interval_109229 chr3 138113621 138114832 + 0 NA exon (ENSMUSG00000104776.1, exon 2 of 2) antisense-exon (ENSMUSG00000104776.1, exon 2 of 2) 10310 ENSMUSG00000104776.1 ENSMUSG00000104776 ENSMUST00000196625 Gm43691 antisense Interval_46885 chr13 73106742 73108373 + 0 NA Intergenic Intergenic -125838 ENSMUSG00000113952.1 ENSMUSG00000113952 ENSMUST00000223231 Rpl31-ps2 processed_pseudogene Interval_83767 chr19 4485631 4486577 + 0 NA Intergenic Intergenic -8978 ENSMUSG00000049303.10 ENSMUSG00000049303 ENSMUST00000133222 Syt12 protein_coding Interval_80717 chr18 46562156 46563101 + 0 NA intron (ENSMUSG00000033184.14, intron 3 of 3) protein_coding-intron (ENSMUSG00000033184.14, intron 3 of 3) 11905 ENSMUSG00000056130.10 ENSMUSG00000056130 ENSMUST00000149929 Ticam2 protein_coding Interval_109683 chr3 145980198 145981591 + 0 NA Intergenic Intergenic -7243 ENSMUSG00000036863.12 ENSMUSG00000036863 ENSMUST00000195918 Syde2 protein_coding Interval_37528 chr12 69589738 69590321 + 0 NA intron (ENSMUSG00000034801.13, intron 20 of 22) protein_coding-intron (ENSMUSG00000034801.13, intron 20 of 22) -3771 ENSMUSG00000065919.1 ENSMUSG00000065919 ENSMUST00000083985 Gm24449 snRNA Interval_119694 chr4 139278098 139278414 + 0 NA intron (ENSMUSG00000028745.18, intron 4 of 6) protein_coding-intron (ENSMUSG00000028745.18, intron 4 of 8) 32409 ENSMUSG00000028744.15 ENSMUSG00000028744 ENSMUST00000141007 Pqlc2 protein_coding Interval_128544 chr5 113937467 113937880 + 0 NA exon (ENSMUSG00000042121.16, exon 15 of 15) protein_coding-exon (ENSMUSG00000042121.16, exon 15 of 15) -7539 ENSMUSG00000105664.1 ENSMUSG00000105664 ENSMUST00000197573 Gm42797 lincRNA Interval_89259 chr2 18585178 18587891 + 0 NA Intergenic Intergenic 18408 ENSMUSG00000081181.1 ENSMUSG00000081181 ENSMUST00000120891 Gm13353 processed_pseudogene Interval_41154 chr12 111527937 111528793 + 0 NA Intergenic Intergenic -11214 ENSMUSG00000021282.17 ENSMUSG00000021282 ENSMUST00000221243 Eif5 protein_coding Interval_124352 chr5 44375742 44376141 + 0 NA Intergenic Intergenic -19187 ENSMUSG00000106394.1 ENSMUSG00000106394 ENSMUST00000197790 Gm42698 processed_pseudogene Interval_129060 chr5 117138665 117139113 + 0 NA intron (ENSMUSG00000061288.13, intron 1 of 12) protein_coding-intron (ENSMUSG00000061288.13, intron 1 of 19) 5301 ENSMUSG00000061288.13 ENSMUSG00000061288 ENSMUST00000111975 Taok3 protein_coding Interval_88343 chr2 4159508 4160008 + 0 NA intron (ENSMUSG00000026657.17, intron 1 of 22) protein_coding-intron (ENSMUSG00000026657.17, intron 1 of 22) -18352 ENSMUSG00000102136.1 ENSMUSG00000102136 ENSMUST00000195326 Gm37107 sense_intronic Interval_50307 chr14 11763166 11764211 + 0 NA intron (ENSMUSG00000021745.14, intron 2 of 3) protein_coding-intron (ENSMUSG00000021745.14, intron 2 of 29) -4255 ENSMUSG00000114310.1 ENSMUSG00000114310 ENSMUST00000225152 Gm48602 TEC Interval_158869 chr8 87570210 87571359 + 0 NA intron (ENSMUSG00000069971.5, intron 3 of 5) protein_coding-intron (ENSMUSG00000069971.5, intron 3 of 5) 6931 ENSMUSG00000069971.5 ENSMUSG00000069971 ENSMUST00000093342 4933402J07Rik protein_coding Interval_165336 chr9 46378119 46379983 + 0 NA intron (ENSMUSG00000110864.1, intron 4 of 4) lincRNA-intron (ENSMUSG00000110864.1, intron 4 of 4) -18311 ENSMUSG00000110802.1 ENSMUSG00000110802 ENSMUST00000213920 Gm47141 lincRNA Interval_65354 chr16 21799469 21799669 + 0 NA intron (ENSMUSG00000033618.7, intron 2 of 14) lincRNA-intron (ENSMUSG00000097290.9, intron 2 of 4) 5235 ENSMUSG00000097290.9 ENSMUSG00000097290 ENSMUST00000180830 1300002E11Rik lincRNA Interval_90547 chr2 31090722 31091945 + 0 NA intron (ENSMUSG00000075415.13, intron 4 of 6) protein_coding-intron (ENSMUSG00000075415.13, intron 4 of 13) 24979 ENSMUSG00000075415.13 ENSMUSG00000075415 ENSMUST00000136085 Fnbp1 protein_coding Interval_130246 chr5 125183526 125183850 + 0 NA Intergenic Intergenic 89127 ENSMUSG00000105039.1 ENSMUSG00000105039 ENSMUST00000198586 Gm32585 lincRNA Interval_635 chr1 9323875 9324125 + 0 NA Intergenic Intergenic 37078 ENSMUSG00000102871.1 ENSMUSG00000102871 ENSMUST00000195180 Gm37143 TEC Interval_8925 chr1 152290741 152291460 + 0 NA Intergenic Intergenic 1428 ENSMUSG00000103744.1 ENSMUSG00000103744 ENSMUST00000194334 Gm38238 TEC Interval_101572 chr3 6849748 6850634 + 0 NA Intergenic Intergenic -98119 ENSMUSG00000103538.3 ENSMUSG00000103538 ENSMUST00000192834 Olfr289-ps1 unprocessed_pseudogene Interval_91823 chr2 49897195 49897805 + 0 NA intron (ENSMUSG00000026765.12, intron 4 of 4) protein_coding-intron (ENSMUSG00000026765.12, intron 3 of 9) 9380 ENSMUSG00000088825.1 ENSMUSG00000088825 ENSMUST00000158200 Gm25223 misc_RNA Interval_133820 chr6 12793243 12793683 + 0 NA Intergenic Intergenic -44210 ENSMUSG00000032625.14 ENSMUSG00000032625 ENSMUST00000119443 Thsd7a protein_coding Interval_124769 chr5 53773358 53773841 + 0 NA Intergenic Intergenic -66039 ENSMUSG00000029193.7 ENSMUSG00000029193 ENSMUST00000202946 Cckar protein_coding Interval_42369 chr13 12421553 12421873 + 0 NA intron (ENSMUSG00000050244.9, intron 26 of 44) protein_coding-intron (ENSMUSG00000050244.9, intron 26 of 44) 3892 ENSMUSG00000113931.1 ENSMUSG00000113931 ENSMUST00000221839 Gm5928 processed_pseudogene Interval_70277 chr17 8124898 8125860 + 0 NA intron (ENSMUSG00000095687.2, intron 9 of 9) protein_coding-intron (ENSMUSG00000095687.2, intron 9 of 9) 22406 ENSMUSG00000095687.2 ENSMUSG00000095687 ENSMUST00000097420 Rnaset2a protein_coding Interval_141859 chr6 134969370 134969812 + 0 NA Intergenic Intergenic -12127 ENSMUSG00000090698.2 ENSMUSG00000090698 ENSMUST00000167323 Apold1 protein_coding Interval_168863 chr9 88201230 88201498 + 0 NA Intergenic Intergenic 55395 ENSMUSG00000102075.2 ENSMUSG00000102075 ENSMUST00000189012 Gm5368 processed_pseudogene Interval_154057 chr8 12391316 12392000 + 0 NA TTS (ENSMUSG00000110160.1) TEC-TTS (ENSMUSG00000110160.1) 1490 ENSMUSG00000110160.1 ENSMUSG00000110160 ENSMUST00000211492 Gm45560 TEC Interval_31020 chr11 97744099 97745584 + 0 NA promoter-TSS (ENSMUSG00000018547.8) protein_coding-promoter-TSS (ENSMUSG00000018547.8) -56 ENSMUSG00000098919.1 ENSMUSG00000098919 ENSMUST00000184148 Mir8102 miRNA Interval_3780 chr1 63057301 63059028 + 0 NA exon (ENSMUSG00000040865.15, exon 11 of 11) protein_coding-exon (ENSMUSG00000040865.15, exon 11 of 11) 5397 ENSMUSG00000040865.15 ENSMUSG00000040865 ENSMUST00000153992 Ino80d protein_coding Interval_16898 chr10 69636054 69636904 + 0 NA intron (ENSMUSG00000069601.14, intron 2 of 2) protein_coding-intron (ENSMUSG00000069601.14, intron 1 of 16) -70118 ENSMUSG00000112729.1 ENSMUSG00000112729 ENSMUST00000220152 Gm46231 processed_pseudogene Interval_105086 chr3 81080151 81080452 + 0 NA intron (ENSMUSG00000028019.9, intron 1 of 5) protein_coding-intron (ENSMUSG00000028019.9, intron 1 of 5) -39864 ENSMUSG00000085106.1 ENSMUSG00000085106 ENSMUST00000146657 Gm16000 antisense Interval_65029 chr16 18574387 18575010 + 0 NA Intergenic Intergenic 14110 ENSMUSG00000009097.10 ENSMUSG00000009097 ENSMUST00000232589 Tbx1 protein_coding Interval_3332 chr1 56991241 56991440 + 0 NA intron (ENSMUSG00000087022.4, intron 1 of 4) processed_transcript-intron (ENSMUSG00000087022.4, intron 1 of 4) 7935 ENSMUSG00000094128.1 ENSMUSG00000094128 ENSMUST00000179712 Gm23943 miRNA Interval_73636 chr17 42042943 42043159 + 0 NA Intergenic Intergenic -272938 ENSMUSG00000042256.5 ENSMUSG00000042256 ENSMUST00000232968 Ptchd4 protein_coding Interval_171276 chr9 115943247 115944021 + 0 NA intron (ENSMUSG00000056880.12, intron 2 of 13) protein_coding-intron (ENSMUSG00000056880.12, intron 3 of 14) 6492 ENSMUSG00000056880.12 ENSMUSG00000056880 ENSMUST00000121770 Gadl1 protein_coding Interval_26337 chr11 56459594 56459803 + 0 NA exon (ENSMUSG00000081749.3, exon 1 of 1) processed_pseudogene-exon (ENSMUSG00000081749.3, exon 1 of 1) 349 ENSMUSG00000081749.3 ENSMUSG00000081749 ENSMUST00000118330 Gm12241 processed_pseudogene Interval_32064 chr11 104978063 104978310 + 0 NA intron (ENSMUSG00000040838.10, intron 125 of 187) protein_coding-intron (ENSMUSG00000040838.10, intron 125 of 187) 49970 ENSMUSG00000080694.1 ENSMUSG00000080694 ENSMUST00000118253 Gm11621 processed_pseudogene Interval_119620 chr4 138793358 138795166 + 0 NA Intergenic Intergenic 15561 ENSMUSG00000041193.15 ENSMUSG00000041193 ENSMUST00000140100 Pla2g5 protein_coding Interval_51376 chr14 27094007 27095072 + 0 NA intron (ENSMUSG00000040717.6, intron 11 of 13) protein_coding-intron (ENSMUSG00000040717.6, intron 9 of 12) -20360 ENSMUSG00000021895.10 ENSMUSG00000021895 ENSMUST00000225494 Arhgef3 protein_coding Interval_111498 chr4 22211455 22212859 + 0 NA Intergenic Intergenic -63676 ENSMUSG00000083376.1 ENSMUSG00000083376 ENSMUST00000121463 Gm11882 processed_pseudogene Interval_62721 chr15 96453797 96454281 + 0 NA intron (ENSMUSG00000033228.8, intron 1 of 1) protein_coding-intron (ENSMUSG00000033228.8, intron 1 of 14) -9984 ENSMUSG00000033228.8 ENSMUSG00000033228 ENSMUST00000227133 Scaf11 protein_coding Interval_145577 chr7 35697990 35698845 + 0 NA intron (ENSMUSG00000043671.14, intron 2 of 4) protein_coding-intron (ENSMUSG00000043671.14, intron 16 of 18) 10148 ENSMUSG00000043671.14 ENSMUSG00000043671 ENSMUST00000124116 Dpy19l3 protein_coding Interval_94235 chr2 86050673 86051776 + 0 NA TTS (ENSMUSG00000102091.2) protein_coding-TTS (ENSMUSG00000102091.2) 5363 ENSMUSG00000102091.2 ENSMUSG00000102091 ENSMUST00000213496 Olfr1034 protein_coding Interval_101328 chr2 180472254 180473375 + 0 NA exon (ENSMUSG00000038963.15, exon 9 of 12) protein_coding-exon (ENSMUSG00000038963.15, exon 9 of 12) 16480 ENSMUSG00000038963.15 ENSMUSG00000038963 ENSMUST00000128367 Slco4a1 protein_coding Interval_33688 chr11 117925095 117925367 + 0 NA Intergenic Intergenic 3326 ENSMUSG00000082562.1 ENSMUSG00000082562 ENSMUST00000121028 Gm11726 processed_pseudogene Interval_135236 chr6 37699217 37699826 + 0 NA Intergenic Intergenic -12326 ENSMUSG00000107035.1 ENSMUSG00000107035 ENSMUST00000201305 Ybx1-ps2 processed_pseudogene Interval_122846 chr5 26036657 26037067 + 0 NA intron (ENSMUSG00000073119.3, intron 2 of 4) protein_coding-intron (ENSMUSG00000073119.3, intron 2 of 4) 2696 ENSMUSG00000073119.3 ENSMUSG00000073119 ENSMUST00000079447 Speer4a protein_coding Interval_135951 chr6 49055090 49055787 + 0 NA intron (ENSMUSG00000029816.10, intron 9 of 10) protein_coding-intron (ENSMUSG00000029816.10, intron 9 of 10) -16192 ENSMUSG00000107758.1 ENSMUSG00000107758 ENSMUST00000204279 Gm19253 processed_pseudogene Interval_8820 chr1 151374915 151375310 + 0 NA intron (ENSMUSG00000052748.14, intron 16 of 18) protein_coding-intron (ENSMUSG00000052748.14, intron 17 of 19) 13865 ENSMUSG00000023150.14 ENSMUSG00000023150 ENSMUST00000190872 Ivns1abp protein_coding Interval_152748 chr7 137159265 137159579 + 0 NA Intergenic Intergenic -8398 ENSMUSG00000110174.1 ENSMUSG00000110174 ENSMUST00000211656 Gm45499 processed_pseudogene Interval_47253 chr13 79774371 79774642 + 0 NA Intergenic Intergenic -63571 ENSMUSG00000114505.1 ENSMUSG00000114505 ENSMUST00000223593 Gm48471 processed_pseudogene Interval_55195 chr14 79257687 79258347 + 0 NA Intergenic Intergenic -2436 ENSMUSG00000115045.1 ENSMUSG00000115045 ENSMUST00000226573 Gm49028 processed_pseudogene Interval_89711 chr2 24911987 24913051 + 0 NA intron (ENSMUSG00000036893.17, intron 1 of 4) protein_coding-intron (ENSMUSG00000036893.17, intron 1 of 25) 15612 ENSMUSG00000026972.15 ENSMUSG00000026972 ENSMUST00000133396 Arrdc1 protein_coding Interval_103753 chr3 52354197 52354410 + 0 NA Intergenic Intergenic -71105 ENSMUSG00000103454.1 ENSMUSG00000103454 ENSMUST00000194115 Gm38098 processed_pseudogene Interval_155158 chr8 27120374 27121954 + 0 NA exon (ENSMUSG00000031486.15, exon 19 of 19) protein_coding-exon (ENSMUSG00000031486.15, exon 19 of 19) 3795 ENSMUSG00000031486.15 ENSMUSG00000031486 ENSMUST00000179351 Adgra2 protein_coding Interval_121151 chr4 153546811 153548552 + 0 NA Intergenic Intergenic -65502 ENSMUSG00000039546.9 ENSMUSG00000039546 ENSMUST00000149177 Ajap1 protein_coding Interval_152249 chr7 130929070 130930786 + 0 NA intron (ENSMUSG00000030849.18, intron 2 of 6) protein_coding-intron (ENSMUSG00000030849.18, intron 2 of 6) -13561 ENSMUSG00000006205.13 ENSMUSG00000006205 ENSMUST00000150905 Htra1 protein_coding Interval_163576 chr9 22306885 22308325 + 0 NA promoter-TSS (ENSMUSG00000066829.7) protein_coding-promoter-TSS (ENSMUSG00000066829.7) -637 ENSMUSG00000066829.7 ENSMUSG00000066829 ENSMUST00000217563 Zfp810 protein_coding Interval_67863 chr16 58303302 58303654 + 0 NA Intergenic Intergenic 15593 ENSMUSG00000104456.1 ENSMUSG00000104456 ENSMUST00000193141 Gm37825 TEC Interval_60687 chr15 76162652 76162901 + 0 NA Intergenic Intergenic 12408 ENSMUSG00000116475.1 ENSMUSG00000116475 ENSMUST00000229700 Gm19945 processed_pseudogene Interval_9334 chr1 156345634 156345823 + 0 NA intron (ENSMUSG00000026601.14, intron 19 of 24) protein_coding-intron (ENSMUSG00000026601.14, intron 18 of 21) -20312 ENSMUSG00000078193.2 ENSMUSG00000078193 ENSMUST00000102782 Gm2000 protein_coding Interval_117613 chr4 125055604 125056163 + 0 NA TTS (ENSMUSG00000028869.13) protein_coding-TTS (ENSMUSG00000028869.13) 2732 ENSMUSG00000028869.13 ENSMUSG00000028869 ENSMUST00000147550 Gnl2 protein_coding Interval_24415 chr11 33098884 33099233 + 0 NA Intergenic Intergenic 30507 ENSMUSG00000087318.1 ENSMUSG00000087318 ENSMUST00000147896 Gm12114 lincRNA Interval_132230 chr5 143489559 143489749 + 0 NA intron (ENSMUSG00000039206.13, intron 1 of 1) protein_coding-intron (ENSMUSG00000039206.13, intron 8 of 14) 16737 ENSMUSG00000039206.13 ENSMUSG00000039206 ENSMUST00000155383 Daglb protein_coding Interval_165117 chr9 44651998 44652396 + 0 NA TTS (ENSMUSG00000111060.1) unprocessed_pseudogene-TTS (ENSMUSG00000111060.1) 1276 ENSMUSG00000111060.1 ENSMUSG00000111060 ENSMUST00000214694 Gm47238 unprocessed_pseudogene Interval_147274 chr7 65393843 65395133 + 0 NA intron (ENSMUSG00000030516.14, intron 2 of 4) protein_coding-intron (ENSMUSG00000030516.14, intron 2 of 4) -7359 ENSMUSG00000108541.1 ENSMUSG00000108541 ENSMUST00000205496 Gm44795 processed_pseudogene Interval_99250 chr2 158369273 158370765 + 0 NA Intergenic Intergenic -5743 ENSMUSG00000044349.16 ENSMUSG00000044349 ENSMUST00000239345 Snhg11 protein_coding Interval_37729 chr12 71470819 71471038 + 0 NA intron (ENSMUSG00000113441.1, intron 5 of 5) lincRNA-intron (ENSMUSG00000113441.1, intron 5 of 5) -17357 ENSMUSG00000113630.1 ENSMUSG00000113630 ENSMUST00000220948 4930404H11Rik lincRNA Interval_138913 chr6 93475087 93475274 + 0 NA Intergenic Intergenic -19623 ENSMUSG00000107848.1 ENSMUSG00000107848 ENSMUST00000203106 Gm44181 TEC Interval_119733 chr4 139580712 139581186 + 0 NA intron (ENSMUSG00000041025.15, intron 1 of 8) protein_coding-intron (ENSMUSG00000041025.15, intron 3 of 10) 6229 ENSMUSG00000041025.15 ENSMUSG00000041025 ENSMUST00000174078 Iffo2 protein_coding Interval_99553 chr2 163119469 163119692 + 0 NA Intergenic Intergenic -3026 ENSMUSG00000086152.1 ENSMUSG00000086152 ENSMUST00000144092 Gm11454 lincRNA Interval_145379 chr7 34333722 34334171 + 0 NA Intergenic Intergenic 19549 ENSMUSG00000066568.12 ENSMUSG00000066568 ENSMUST00000206715 Lsm14a protein_coding Interval_169360 chr9 96695131 96695442 + 0 NA intron (ENSMUSG00000040433.16, intron 5 of 5) protein_coding-intron (ENSMUSG00000040433.16, intron 2 of 2) -10542 ENSMUSG00000102097.1 ENSMUSG00000102097 ENSMUST00000186821 A930006L05Rik antisense Interval_172110 chrX 7667234 7667824 + 0 NA TTS (ENSMUSG00000031146.6) protein_coding-TTS (ENSMUSG00000031146.6) 1431 ENSMUSG00000031145.15 ENSMUSG00000031145 ENSMUST00000153994 Prickle3 protein_coding Interval_69737 chr16 95951514 95951806 + 0 NA Intergenic Intergenic 39230 ENSMUSG00000022913.16 ENSMUSG00000022913 ENSMUST00000233134 Psmg1 protein_coding Interval_82874 chr18 78132371 78132814 + 0 NA intron (ENSMUSG00000059336.14, intron 1 of 8) protein_coding-intron (ENSMUSG00000059336.14, intron 1 of 8) 9527 ENSMUSG00000059336.14 ENSMUSG00000059336 ENSMUST00000160639 Slc14a1 protein_coding Interval_51697 chr14 31477813 31479499 + 0 NA TTS (ENSMUSG00000021891.8) protein_coding-TTS (ENSMUSG00000021891.8) 15038 ENSMUSG00000021891.8 ENSMUSG00000021891 ENSMUST00000227852 Mettl6 protein_coding Interval_25753 chr11 51510036 51510802 + 0 NA intron (ENSMUSG00000063564.13, intron 2 of 28) protein_coding-intron (ENSMUSG00000063564.13, intron 2 of 28) -64013 ENSMUSG00000063564.13 ENSMUSG00000063564 ENSMUST00000151098 Col23a1 protein_coding Interval_158901 chr8 87824258 87825277 + 0 NA intron (ENSMUSG00000045333.15, intron 3 of 3) protein_coding-intron (ENSMUSG00000045333.15, intron 2 of 6) 129095 ENSMUSG00000045333.15 ENSMUSG00000045333 ENSMUST00000173092 Zfp423 protein_coding Interval_138292 chr6 86973029 86973575 + 0 NA intron (ENSMUSG00000057230.14, intron 4 of 4) protein_coding-intron (ENSMUSG00000057230.14, intron 15 of 19) -3227 ENSMUSG00000107688.1 ENSMUSG00000107688 ENSMUST00000205212 Gm44091 sense_intronic Interval_63646 chr15 102517070 102519016 + 0 NA promoter-TSS (ENSMUSG00000023051.11) protein_coding-promoter-TSS (ENSMUSG00000023051.11) -396 ENSMUSG00000023051.11 ENSMUSG00000023051 ENSMUST00000153171 Tarbp2 protein_coding Interval_41599 chr12 116692012 116692701 + 0 NA intron (ENSMUSG00000056553.14, intron 2 of 4) protein_coding-intron (ENSMUSG00000056553.14, intron 2 of 22) 95103 ENSMUSG00000101814.1 ENSMUSG00000101814 ENSMUST00000186869 Gm17807 processed_pseudogene Interval_30919 chr11 97223561 97224251 + 0 NA TTS (ENSMUSG00000001441.13) protein_coding-TTS (ENSMUSG00000001441.13) -56222 ENSMUSG00000086680.2 ENSMUSG00000086680 ENSMUST00000133160 Gm11592 antisense Interval_112468 chr4 41419528 41419837 + 0 NA intron (ENSMUSG00000028438.16, intron 5 of 6) protein_coding-intron (ENSMUSG00000028438.16, intron 3 of 9) 45164 ENSMUSG00000028438.16 ENSMUSG00000028438 ENSMUST00000131532 Kif24 protein_coding Interval_154159 chr8 13139825 13140435 + 0 NA promoter-TSS (ENSMUSG00000031446.14) protein_coding-promoter-TSS (ENSMUSG00000031446.14) -177 ENSMUSG00000031446.14 ENSMUSG00000031446 ENSMUST00000125646 Cul4a protein_coding Interval_6048 chr1 94993144 94993940 + 0 NA Intergenic Intergenic 46501 ENSMUSG00000089310.1 ENSMUSG00000089310 ENSMUST00000158685 Gm23181 snoRNA Interval_158023 chr8 78114298 78115078 + 0 NA Intergenic Intergenic 6728 ENSMUSG00000109948.1 ENSMUSG00000109948 ENSMUST00000210236 Gm45288 processed_pseudogene Interval_129842 chr5 122691915 122693614 + 0 NA Intergenic Intergenic 4836 ENSMUSG00000059352.5 ENSMUSG00000059352 ENSMUST00000071235 Gm10064 processed_pseudogene Interval_40308 chr12 103449007 103449294 + 0 NA Intergenic Intergenic -5470 ENSMUSG00000079017.3 ENSMUSG00000079017 ENSMUST00000055071 Ifi27l2a protein_coding Interval_103983 chr3 56135984 56136888 + 0 NA intron (ENSMUSG00000027799.12, intron 1 of 57) protein_coding-intron (ENSMUSG00000027799.12, intron 1 of 57) -5909 ENSMUSG00000106528.1 ENSMUSG00000106528 ENSMUST00000199806 Gm42841 TEC Interval_158043 chr8 78267792 78268468 + 0 NA intron (ENSMUSG00000037101.16, intron 1 of 1) protein_coding-intron (ENSMUSG00000037101.16, intron 7 of 13) 54780 ENSMUSG00000037101.16 ENSMUSG00000037101 ENSMUST00000124713 Ttc29 protein_coding Interval_92289 chr2 58454240 58454446 + 0 NA intron (ENSMUSG00000026836.15, intron 10 of 11) protein_coding-intron (ENSMUSG00000026836.15, intron 9 of 10) -15773 ENSMUSG00000091922.1 ENSMUSG00000091922 ENSMUST00000167423 Gm17409 TEC Interval_141755 chr6 134242906 134244406 + 0 NA promoter-TSS (ENSMUSG00000092134.1) antisense-promoter-TSS (ENSMUSG00000092134.1) 55 ENSMUSG00000092134.1 ENSMUSG00000092134 ENSMUST00000171098 Gm17089 antisense Interval_134296 chr6 24636863 24637404 + 0 NA TTS (ENSMUSG00000029684.14) protein_coding-TTS (ENSMUSG00000029684.14) -9060 ENSMUSG00000029684.14 ENSMUSG00000029684 ENSMUST00000173399 Wasl protein_coding Interval_119947 chr4 141069072 141070719 + 0 NA TTS (ENSMUSG00000028923.14) protein_coding-TTS (ENSMUSG00000028923.14) 3810 ENSMUSG00000028923.14 ENSMUSG00000028923 ENSMUST00000144813 Necap2 protein_coding Interval_8003 chr1 135170021 135170771 + 0 NA Intergenic Intergenic -2715 ENSMUSG00000026424.8 ENSMUSG00000026424 ENSMUST00000027682 Gpr37l1 protein_coding Interval_117202 chr4 120543763 120544172 + 0 NA intron (ENSMUSG00000028633.7, intron 3 of 5) protein_coding-intron (ENSMUSG00000028633.7, intron 13 of 18) 1100 ENSMUSG00000028633.7 ENSMUSG00000028633 ENSMUST00000140891 Ctps protein_coding Interval_160496 chr8 110002765 110003419 + 0 NA Intergenic Intergenic 11232 ENSMUSG00000110561.1 ENSMUSG00000110561 ENSMUST00000212348 Gm45888 processed_pseudogene Interval_130480 chr5 128203998 128204545 + 0 NA intron (ENSMUSG00000034310.8, intron 2 of 8) protein_coding-intron (ENSMUSG00000034310.8, intron 2 of 8) 37068 ENSMUSG00000104581.1 ENSMUSG00000104581 ENSMUST00000197363 Gm42497 TEC Interval_108188 chr3 122291885 122294125 + 0 NA promoter-TSS (ENSMUSG00000105057.1) lincRNA-promoter-TSS (ENSMUSG00000105057.1) -434 ENSMUSG00000105057.1 ENSMUSG00000105057 ENSMUST00000196570 Gm40190 lincRNA Interval_163857 chr9 27175061 27176623 + 0 NA Intergenic Intergenic 27456 ENSMUSG00000110836.1 ENSMUSG00000110836 ENSMUST00000216094 Gm48801 lincRNA Interval_70308 chr17 8396496 8396865 + 0 NA promoter-TSS (ENSMUSG00000058159.14) protein_coding-promoter-TSS (ENSMUSG00000058159.14) -12020 ENSMUSG00000116704.1 ENSMUSG00000116704 ENSMUST00000231828 Gm5491 processed_pseudogene Interval_42235 chr13 10557190 10557644 + 0 NA intron (ENSMUSG00000097009.2, intron 2 of 3) antisense-intron (ENSMUSG00000097009.2, intron 5 of 7) 290 ENSMUSG00000113243.1 ENSMUSG00000113243 ENSMUST00000222590 Gm36525 lincRNA Interval_6440 chr1 108713947 108714157 + 0 NA Intergenic Intergenic -56083 ENSMUSG00000101097.1 ENSMUSG00000101097 ENSMUST00000191467 Gm6679 processed_pseudogene Interval_102214 chr3 19522160 19522881 + 0 NA intron (ENSMUSG00000027606.12, intron 1 of 4) protein_coding-intron (ENSMUSG00000027606.12, intron 1 of 4) -8727 ENSMUSG00000027606.12 ENSMUSG00000027606 ENSMUST00000165693 Dnajc5b protein_coding Interval_112372 chr4 40897154 40897629 + 0 NA Intergenic Intergenic 15964 ENSMUSG00000081309.3 ENSMUSG00000081309 ENSMUST00000117674 Gm12397 processed_pseudogene Interval_66631 chr16 35749432 35749941 + 0 NA intron (ENSMUSG00000022848.8, intron 1 of 7) protein_coding-intron (ENSMUSG00000022848.8, intron 2 of 8) 19644 ENSMUSG00000022848.8 ENSMUSG00000022848 ENSMUST00000149892 Slc49a4 protein_coding Interval_126182 chr5 81623663 81624567 + 0 NA intron (ENSMUSG00000037605.16, intron 9 of 12) protein_coding-intron (ENSMUSG00000037605.16, intron 7 of 24) 88389 ENSMUSG00000107375.1 ENSMUSG00000107375 ENSMUST00000200696 Gm43084 TEC Interval_13206 chr10 13022305 13025388 + 0 NA Intergenic Intergenic 18503 ENSMUSG00000078348.4 ENSMUSG00000078348 ENSMUST00000105139 Sf3b5 protein_coding Interval_109393 chr3 141603162 141603427 + 0 NA intron (ENSMUSG00000059921.15, intron 1 of 15) protein_coding-intron (ENSMUSG00000059921.15, intron 1 of 16) 79606 ENSMUSG00000089924.1 ENSMUSG00000089924 ENSMUST00000160604 Gm15689 antisense Interval_160390 chr8 108900532 108901058 + 0 NA intron (ENSMUSG00000038872.10, intron 10 of 15) protein_coding-intron (ENSMUSG00000038872.10, intron 4 of 9) 21079 ENSMUSG00000093697.1 ENSMUSG00000093697 ENSMUST00000175846 Gm20686 antisense Interval_27098 chr11 62875813 62876218 + 0 NA intron (ENSMUSG00000090173.8, intron 12 of 12) protein_coding-intron (ENSMUSG00000090173.8, intron 13 of 13) -3599 ENSMUSG00000014177.10 ENSMUSG00000014177 ENSMUST00000140377 Tvp23b protein_coding Interval_90323 chr2 29775374 29775701 + 0 NA TTS (ENSMUSG00000039826.13) protein_coding-TTS (ENSMUSG00000039826.13) 12085 ENSMUSG00000039826.13 ENSMUSG00000039826 ENSMUST00000175644 Trub2 protein_coding Interval_114093 chr4 63393789 63394698 + 0 NA TTS (ENSMUSG00000086953.1) antisense-TTS (ENSMUSG00000086953.1) 12885 ENSMUSG00000086953.1 ENSMUSG00000086953 ENSMUST00000144095 Aknaos antisense Interval_126297 chr5 86240869 86241158 + 0 NA intron (ENSMUSG00000061184.8, intron 5 of 8) protein_coding-intron (ENSMUSG00000061184.8, intron 6 of 9) -4052 ENSMUSG00000094833.1 ENSMUSG00000094833 ENSMUST00000180191 Gm25473 snRNA Interval_106487 chr3 96653683 96653903 + 0 NA TTS (ENSMUSG00000106447.1) protein_coding-TTS (ENSMUSG00000106447.1) -3645 ENSMUSG00000090210.7 ENSMUSG00000090210 ENSMUST00000127607 Itga10 protein_coding Interval_114372 chr4 74386735 74386931 + 0 NA intron (ENSMUSG00000028397.13, intron 19 of 21) protein_coding-intron (ENSMUSG00000028397.13, intron 19 of 21) 124024 ENSMUSG00000028397.13 ENSMUSG00000028397 ENSMUST00000150439 Kdm4c protein_coding Interval_39194 chr12 85729085 85730163 + 0 NA TTS (ENSMUSG00000113464.1) processed_pseudogene-TTS (ENSMUSG00000113464.1) 1167 ENSMUSG00000113464.1 ENSMUSG00000113464 ENSMUST00000220921 Gm47901 processed_pseudogene Interval_92795 chr2 65481195 65481407 + 0 NA intron (ENSMUSG00000057182.15, intron 20 of 26) protein_coding-intron (ENSMUSG00000057182.15, intron 20 of 26) -27964 ENSMUSG00000086701.1 ENSMUSG00000086701 ENSMUST00000145994 Gm13595 antisense Interval_121045 chr4 152406211 152406509 + 0 NA TTS (ENSMUSG00000028931.12) protein_coding-TTS (ENSMUSG00000028931.12) -4440 ENSMUSG00000090057.1 ENSMUSG00000090057 ENSMUST00000161416 Gm16333 antisense Interval_8070 chr1 135550949 135551469 + 0 NA intron (ENSMUSG00000009418.16, intron 4 of 30) protein_coding-intron (ENSMUSG00000009418.16, intron 1 of 29) -25871 ENSMUSG00000104524.1 ENSMUSG00000104524 ENSMUST00000192904 Gm37333 TEC Interval_172178 chrX 8224748 8225400 + 0 NA Intergenic Intergenic -18583 ENSMUSG00000031169.13 ENSMUSG00000031169 ENSMUST00000139744 Porcn protein_coding Interval_144726 chr7 27804290 27805258 + 0 NA Intergenic Intergenic -2422 ENSMUSG00000030604.9 ENSMUSG00000030604 ENSMUST00000080175 Zfp626 protein_coding Interval_22941 chr11 17702801 17703417 + 0 NA Intergenic Intergenic -63926 ENSMUSG00000082411.1 ENSMUSG00000082411 ENSMUST00000119079 Gm12016 processed_pseudogene Interval_153552 chr8 3389668 3390446 + 0 NA TTS (ENSMUSG00000004568.13) protein_coding-TTS (ENSMUSG00000004568.13) 36620 ENSMUSG00000004568.13 ENSMUSG00000004568 ENSMUST00000145360 Arhgef18 protein_coding Interval_164969 chr9 43512135 43512810 + 0 NA intron (ENSMUSG00000111110.1, intron 3 of 3) lincRNA-intron (ENSMUSG00000111110.1, intron 3 of 3) 3360 ENSMUSG00000111110.1 ENSMUSG00000111110 ENSMUST00000216439 Gm36855 lincRNA Interval_159255 chr8 92366693 92367624 + 0 NA intron (ENSMUSG00000031737.11, intron 4 of 4) protein_coding-intron (ENSMUSG00000031737.11, intron 4 of 4) 9533 ENSMUSG00000031737.11 ENSMUSG00000031737 ENSMUST00000034184 Irx5 protein_coding Interval_120417 chr4 148463242 148463625 + 0 NA intron (ENSMUSG00000028991.15, intron 9 of 57) protein_coding-intron (ENSMUSG00000028991.15, intron 9 of 57) -18672 ENSMUSG00000047719.2 ENSMUSG00000047719 ENSMUST00000156686 Ubiad1 protein_coding Interval_25462 chr11 48756209 48756960 + 0 NA Intergenic Intergenic -2870 ENSMUSG00000082454.3 ENSMUSG00000082454 ENSMUST00000120566 Gm12183 processed_pseudogene Interval_56105 chr14 105823441 105824756 + 0 NA Intergenic Intergenic 7190 ENSMUSG00000092664.1 ENSMUSG00000092664 ENSMUST00000174923 Gm22406 miRNA Interval_128559 chr5 114021242 114021970 + 0 NA intron (ENSMUSG00000042096.15, intron 9 of 10) protein_coding-intron (ENSMUSG00000042096.15, intron 8 of 9) 11715 ENSMUSG00000042096.15 ENSMUSG00000042096 ENSMUST00000162214 Dao protein_coding Interval_39381 chr12 87010766 87011502 + 0 NA Intergenic Intergenic -15482 ENSMUSG00000034145.14 ENSMUSG00000034145 ENSMUST00000131878 Tmem63c protein_coding Interval_51149 chr14 24181761 24183288 + 0 NA intron (ENSMUSG00000021782.14, intron 5 of 31) protein_coding-intron (ENSMUSG00000021782.14, intron 4 of 30) -11538 ENSMUSG00000114880.1 ENSMUSG00000114880 ENSMUST00000224920 Gm49098 TEC Interval_51074 chr14 22004676 22005843 + 0 NA Intergenic Intergenic 12823 ENSMUSG00000103160.1 ENSMUSG00000103160 ENSMUST00000194287 C130012C08Rik TEC Interval_108646 chr3 129754502 129755404 + 0 NA exon (ENSMUSG00000028017.7, exon 1 of 24) protein_coding-exon (ENSMUSG00000028017.7, exon 1 of 24) 1195 ENSMUSG00000105960.1 ENSMUSG00000105960 ENSMUST00000199846 6330410L21Rik antisense Interval_92421 chr2 59645860 59646927 + 0 NA promoter-TSS (ENSMUSG00000035168.16) protein_coding-promoter-TSS (ENSMUSG00000035168.16) -81709 ENSMUSG00000081157.1 ENSMUSG00000081157 ENSMUST00000118837 Gm13552 processed_pseudogene Interval_53887 chr14 63143280 63143745 + 0 NA exon (ENSMUSG00000021939.8, exon 10 of 10) protein_coding-exon (ENSMUSG00000021939.8, exon 10 of 10) 20998 ENSMUSG00000021939.8 ENSMUSG00000021939 ENSMUST00000225540 Ctsb protein_coding Interval_103910 chr3 54815481 54815821 + 0 NA Intergenic Intergenic -4401 ENSMUSG00000069011.5 ENSMUSG00000069011 ENSMUST00000052888 Gm10254 processed_pseudogene Interval_452 chr1 5492930 5493318 + 0 NA Intergenic Intergenic 89577 ENSMUSG00000102907.1 ENSMUSG00000102907 ENSMUST00000194850 Gm38264 TEC Interval_119396 chr4 137443545 137444175 + 0 NA Intergenic Intergenic -5465 ENSMUSG00000086845.1 ENSMUSG00000086845 ENSMUST00000140495 Gm13010 antisense Interval_100236 chr2 167831165 167831371 + 0 NA intron (ENSMUSG00000087684.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000087684.1, intron 1 of 1) 2378 ENSMUSG00000087684.1 ENSMUSG00000087684 ENSMUST00000143649 1200007C13Rik lincRNA Interval_135102 chr6 35362512 35363128 + 0 NA Intergenic Intergenic 31974 ENSMUSG00000107341.1 ENSMUSG00000107341 ENSMUST00000201560 1700065J11Rik lincRNA Interval_38210 chr12 76380057 76380588 + 0 NA intron (ENSMUSG00000033454.6, intron 1 of 1) protein_coding-intron (ENSMUSG00000033454.6, intron 1 of 1) 10056 ENSMUSG00000033454.6 ENSMUSG00000033454 ENSMUST00000042779 Zbtb1 protein_coding Interval_173359 chrX 84506661 84506896 + 0 NA intron (ENSMUSG00000045103.19, intron 23 of 50) protein_coding-intron (ENSMUSG00000045103.19, intron 51 of 78) -373109 ENSMUSG00000084281.1 ENSMUSG00000084281 ENSMUST00000122197 Gm14770 processed_pseudogene Interval_29920 chr11 87752242 87752526 + 0 NA Intergenic Intergenic -3193 ENSMUSG00000084796.1 ENSMUSG00000084796 ENSMUST00000123700 Mir142hg lincRNA Interval_51098 chr14 22808367 22808776 + 0 NA intron (ENSMUSG00000063458.13, intron 6 of 6) protein_coding-intron (ENSMUSG00000063458.13, intron 5 of 6) -33327 ENSMUSG00000114967.1 ENSMUSG00000114967 ENSMUST00000224513 Gm7473 processed_pseudogene Interval_101715 chr3 9100946 9102200 + 0 NA Intergenic Intergenic 28806 ENSMUSG00000103011.1 ENSMUSG00000103011 ENSMUST00000193160 Gm8860 processed_pseudogene Interval_140537 chr6 119378649 119379452 + 0 NA intron (ENSMUSG00000030168.13, intron 1 of 5) protein_coding-intron (ENSMUSG00000030168.13, intron 1 of 7) 38425 ENSMUSG00000030168.13 ENSMUSG00000030168 ENSMUST00000189710 Adipor2 protein_coding Interval_27132 chr11 63197947 63198589 + 0 NA Intergenic Intergenic 24354 ENSMUSG00000085532.1 ENSMUSG00000085532 ENSMUST00000123420 B430319H21Rik lincRNA Interval_157489 chr8 70856579 70857744 + 0 NA promoter-TSS (ENSMUSG00000002908.17) protein_coding-promoter-TSS (ENSMUSG00000002908.17) -5966 ENSMUSG00000020887.3 ENSMUSG00000020887 ENSMUST00000050921 A230052G05Rik TEC Interval_167561 chr9 70483676 70484146 + 0 NA intron (ENSMUSG00000032217.13, intron 1 of 4) protein_coding-intron (ENSMUSG00000032217.13, intron 2 of 14) 8427 ENSMUSG00000065202.1 ENSMUSG00000065202 ENSMUST00000083268 Gm24615 snoRNA Interval_67784 chr16 57174238 57176461 + 0 NA TTS (ENSMUSG00000097876.1) antisense-TTS (ENSMUSG00000097876.1) 7948 ENSMUSG00000097876.1 ENSMUSG00000097876 ENSMUST00000180999 Gm16892 antisense Interval_49557 chr13 112946237 112947195 + 0 NA intron (ENSMUSG00000042426.6, intron 10 of 26) protein_coding-intron (ENSMUSG00000042426.6, intron 10 of 26) 9131 ENSMUSG00000114477.1 ENSMUSG00000114477 ENSMUST00000225929 Gm8795 processed_pseudogene Interval_119318 chr4 136845941 136846133 + 0 NA Intergenic Intergenic 40150 ENSMUSG00000036905.8 ENSMUSG00000036905 ENSMUST00000046384 C1qb protein_coding Interval_42815 chr13 19985803 19986338 + 0 NA Intergenic Intergenic 9734 ENSMUSG00000050243.6 ENSMUSG00000050243 ENSMUST00000091762 Gm5446 processed_pseudogene Interval_131379 chr5 136804075 136804338 + 0 NA intron (ENSMUSG00000004415.15, intron 3 of 3) protein_coding-intron (ENSMUSG00000004415.15, intron 3 of 12) 34103 ENSMUSG00000004415.15 ENSMUSG00000004415 ENSMUST00000140245 Col26a1 protein_coding Interval_97942 chr2 145984019 145984293 + 0 NA intron (ENSMUSG00000037143.17, intron 8 of 26) protein_coding-intron (ENSMUSG00000037143.17, intron 8 of 15) -49442 ENSMUSG00000001767.5 ENSMUSG00000001767 ENSMUST00000147904 Crnkl1 protein_coding Interval_63791 chr15 103433784 103433992 + 0 NA Intergenic Intergenic -3539 ENSMUSG00000022487.14 ENSMUSG00000022487 ENSMUST00000129837 Gtsf1 protein_coding Interval_93585 chr2 74672589 74673227 + 0 NA Intergenic Intergenic -2105 ENSMUSG00000001823.5 ENSMUSG00000001823 ENSMUST00000001878 Hoxd12 protein_coding Interval_168192 chr9 77865369 77865922 + 0 NA Intergenic Intergenic 13937 ENSMUSG00000111580.1 ENSMUSG00000111580 ENSMUST00000214326 Gm19572 processed_pseudogene Interval_73657 chr17 42485884 42486175 + 0 NA intron (ENSMUSG00000042256.5, intron 2 of 2) protein_coding-intron (ENSMUSG00000042256.5, intron 3 of 3) 125366 ENSMUSG00000043972.8 ENSMUSG00000043972 ENSMUST00000068355 Opn5 protein_coding Interval_62562 chr15 94654767 94655778 + 0 NA intron (ENSMUSG00000063296.5, intron 2 of 2) protein_coding-intron (ENSMUSG00000063296.5, intron 2 of 7) 26040 ENSMUSG00000063296.5 ENSMUSG00000063296 ENSMUST00000080141 Tmem117 protein_coding Interval_100158 chr2 167383854 167384848 + 0 NA Intergenic Intergenic -66704 ENSMUSG00000039463.14 ENSMUSG00000039463 ENSMUST00000148454 Slc9a8 protein_coding Interval_36779 chr12 53835915 53836819 + 0 NA intron (ENSMUSG00000021010.9, intron 4 of 10) protein_coding-intron (ENSMUSG00000021010.9, intron 5 of 11) 243025 ENSMUSG00000099407.1 ENSMUSG00000099407 ENSMUST00000185390 1700060O08Rik antisense Interval_103424 chr3 41478151 41478562 + 0 NA intron (ENSMUSG00000105260.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000105260.1, intron 1 of 1) 3529 ENSMUSG00000105260.1 ENSMUSG00000105260 ENSMUST00000196123 Gm40040 lincRNA Interval_9916 chr1 164063444 164064497 + 0 NA intron (ENSMUSG00000026581.14, intron 2 of 7) protein_coding-intron (ENSMUSG00000026581.14, intron 2 of 8) -4992 ENSMUSG00000026581.14 ENSMUSG00000026581 ENSMUST00000195358 Sell protein_coding Interval_142479 chr6 142751128 142753635 + 0 NA Intergenic Intergenic -4394 ENSMUSG00000030282.14 ENSMUSG00000030282 ENSMUST00000146643 Cmas protein_coding Interval_41189 chr12 111700895 111701342 + 0 NA Intergenic Intergenic -1964 ENSMUSG00000112991.1 ENSMUSG00000112991 ENSMUST00000221152 Gm36635 lincRNA Interval_105067 chr3 80928386 80929512 + 0 NA Intergenic Intergenic -16860 ENSMUSG00000028020.16 ENSMUSG00000028020 ENSMUST00000132330 Glrb protein_coding Interval_15823 chr10 57586364 57586681 + 0 NA Intergenic Intergenic -14871 ENSMUSG00000093406.1 ENSMUSG00000093406 ENSMUST00000177147 Rpl48-ps1 processed_pseudogene Interval_24957 chr11 42008910 42009105 + 0 NA Intergenic Intergenic -92384 ENSMUSG00000020436.17 ENSMUSG00000020436 ENSMUST00000109290 Gabrg2 protein_coding Interval_73609 chr17 41143259 41143523 + 0 NA Intergenic Intergenic 42353 ENSMUSG00000117062.1 ENSMUSG00000117062 ENSMUST00000232966 Ldha-ps3 processed_pseudogene Interval_87284 chr19 47378834 47379801 + 0 NA intron (ENSMUSG00000053617.12, intron 2 of 4) protein_coding-intron (ENSMUSG00000053617.12, intron 3 of 14) 31042 ENSMUSG00000053617.12 ENSMUSG00000053617 ENSMUST00000237828 Sh3pxd2a protein_coding Interval_109181 chr3 137717913 137718627 + 0 NA Intergenic Intergenic 2612 ENSMUSG00000064460.1 ENSMUSG00000064460 ENSMUST00000082526 Gm25080 snRNA Interval_104420 chr3 65488973 65489771 + 0 NA Intergenic Intergenic 5663 ENSMUSG00000103513.1 ENSMUSG00000103513 ENSMUST00000193896 Gm34780 TEC Interval_84114 chr19 7278881 7279486 + 0 NA TTS (ENSMUSG00000024969.15) protein_coding-TTS (ENSMUSG00000024969.15) 11858 ENSMUSG00000024968.14 ENSMUSG00000024968 ENSMUST00000134167 Rcor2 protein_coding Interval_170661 chr9 109946968 109947440 + 0 NA intron (ENSMUSG00000032479.15, intron 1 of 3) protein_coding-intron (ENSMUSG00000032479.15, intron 1 of 18) -22454 ENSMUSG00000105191.1 ENSMUSG00000105191 ENSMUST00000197587 Gm4644 processed_pseudogene Interval_4744 chr1 78215885 78217868 + 0 NA exon (ENSMUSG00000118426.1, exon 1 of 1) processed_pseudogene-exon (ENSMUSG00000118426.1, exon 1 of 1) 600 ENSMUSG00000118426.1 ENSMUSG00000118426 ENSMUST00000238744 Gm2102 processed_pseudogene Interval_19517 chr10 101676406 101676602 + 0 NA Intergenic Intergenic -54271 ENSMUSG00000111931.1 ENSMUSG00000111931 ENSMUST00000218558 Gm47032 TEC Interval_161968 chr8 124149932 124151110 + 0 NA intron (ENSMUSG00000092329.1, intron 1 of 15) protein_coding-intron (ENSMUSG00000092329.1, intron 1 of 15) -9552 ENSMUSG00000110482.1 ENSMUSG00000110482 ENSMUST00000212467 Gm3889 processed_pseudogene Interval_67767 chr16 57016741 57017135 + 0 NA Intergenic Intergenic 35235 ENSMUSG00000116866.1 ENSMUSG00000116866 ENSMUST00000232096 Gm8938 processed_pseudogene Interval_90194 chr2 28939902 28940758 + 0 NA intron (ENSMUSG00000079502.8, intron 5 of 5) protein_coding-intron (ENSMUSG00000079502.8, intron 6 of 6) -5721 ENSMUSG00000083773.4 ENSMUSG00000083773 ENSMUST00000121658 Gm13394 processed_pseudogene Interval_115676 chr4 101957043 101957465 + 0 NA Intergenic Intergenic 16847 ENSMUSG00000070890.3 ENSMUSG00000070890 ENSMUST00000052027 Gm12794 protein_coding Interval_89397 chr2 20404025 20404267 + 0 NA intron (ENSMUSG00000036617.17, intron 2 of 3) protein_coding-intron (ENSMUSG00000036617.17, intron 3 of 7) 28788 ENSMUSG00000085477.7 ENSMUSG00000085477 ENSMUST00000149398 Gm13335 antisense Interval_36524 chr12 48296359 48297641 + 0 NA Intergenic Intergenic -198219 ENSMUSG00000112085.1 ENSMUSG00000112085 ENSMUST00000218671 Gm48587 unprocessed_pseudogene Interval_741 chr1 10382490 10383286 + 0 NA intron (ENSMUSG00000042501.12, intron 7 of 9) protein_coding-intron (ENSMUSG00000042501.12, intron 8 of 10) 69101 ENSMUSG00000103810.1 ENSMUSG00000103810 ENSMUST00000194845 Gm38005 TEC Interval_107305 chr3 105667956 105668240 + 0 NA promoter-TSS (ENSMUSG00000040896.16) protein_coding-promoter-TSS (ENSMUSG00000040896.16) -907 ENSMUSG00000040896.16 ENSMUSG00000040896 ENSMUST00000147209 Kcnd3 protein_coding Interval_67326 chr16 46185921 46186326 + 0 NA Intergenic Intergenic -31046 ENSMUSG00000048087.6 ENSMUSG00000048087 ENSMUST00000059524 Gm4737 protein_coding Interval_146991 chr7 57374692 57375026 + 0 NA intron (ENSMUSG00000055026.13, intron 2 of 2) protein_coding-intron (ENSMUSG00000055026.13, intron 2 of 3) 12329 ENSMUSG00000055026.13 ENSMUSG00000055026 ENSMUST00000171965 Gabrg3 protein_coding Interval_37726 chr12 71448878 71449553 + 0 NA intron (ENSMUSG00000113441.1, intron 5 of 5) lincRNA-intron (ENSMUSG00000113441.1, intron 5 of 5) -39070 ENSMUSG00000113630.1 ENSMUSG00000113630 ENSMUST00000220948 4930404H11Rik lincRNA Interval_49370 chr13 111532311 111532660 + 0 NA intron (ENSMUSG00000085634.2, intron 1 of 1) lincRNA-intron (ENSMUSG00000085634.2, intron 1 of 1) 17426 ENSMUSG00000085634.2 ENSMUSG00000085634 ENSMUST00000132880 Gm15290 lincRNA Interval_32565 chr11 108644376 108644630 + 0 NA intron (ENSMUSG00000020728.17, intron 1 of 5) protein_coding-intron (ENSMUSG00000020728.17, intron 21 of 27) 39276 ENSMUSG00000020728.17 ENSMUSG00000020728 ENSMUST00000132978 Cep112 protein_coding Interval_109424 chr3 142272418 142272643 + 0 NA intron (ENSMUSG00000028273.15, intron 3 of 4) protein_coding-intron (ENSMUSG00000028273.15, intron 8 of 12) 31449 ENSMUSG00000028273.15 ENSMUSG00000028273 ENSMUST00000058626 Pdlim5 protein_coding Interval_111872 chr4 32160522 32161465 + 0 NA Intergenic Intergenic 11207 ENSMUSG00000083872.1 ENSMUSG00000083872 ENSMUST00000119323 Gm11928 processed_pseudogene Interval_91082 chr2 34895533 34896480 + 0 NA exon (ENSMUSG00000026873.9, exon 15 of 15) protein_coding-exon (ENSMUSG00000026873.9, exon 15 of 15) -16865 ENSMUSG00000086001.1 ENSMUSG00000086001 ENSMUST00000143469 Gm13448 processed_transcript Interval_111938 chr4 32689090 32689523 + 0 NA intron (ENSMUSG00000058006.12, intron 19 of 101) protein_coding-intron (ENSMUSG00000058006.12, intron 19 of 101) 32187 ENSMUSG00000058006.12 ENSMUSG00000058006 ENSMUST00000124361 Mdn1 protein_coding Interval_23528 chr11 23148823 23150298 + 0 NA Intergenic Intergenic -2580 ENSMUSG00000086366.1 ENSMUSG00000086366 ENSMUST00000141678 1700061J23Rik lincRNA Interval_97292 chr2 133158176 133158558 + 0 NA Intergenic Intergenic -41244 ENSMUSG00000083689.1 ENSMUSG00000083689 ENSMUST00000117717 Gm14094 processed_pseudogene Interval_94481 chr2 91532357 91532644 + 0 NA intron (ENSMUSG00000040549.16, intron 1 of 4) protein_coding-intron (ENSMUSG00000040549.16, intron 1 of 43) -8616 ENSMUSG00000081834.1 ENSMUSG00000081834 ENSMUST00000117149 Gm13770 processed_pseudogene Interval_114771 chr4 84995870 84996148 + 0 NA intron (ENSMUSG00000038070.15, intron 9 of 25) protein_coding-intron (ENSMUSG00000038070.15, intron 9 of 25) -71820 ENSMUSG00000080303.2 ENSMUSG00000080303 ENSMUST00000116649 Gm12419 processed_pseudogene Interval_82897 chr18 78586484 78586888 + 0 NA intron (ENSMUSG00000024552.16, intron 1 of 21) protein_coding-intron (ENSMUSG00000024552.16, intron 1 of 11) 10256 ENSMUSG00000024552.16 ENSMUSG00000024552 ENSMUST00000235389 Slc14a2 protein_coding Interval_48736 chr13 102625801 102626012 + 0 NA Intergenic Intergenic 21373 ENSMUSG00000114730.1 ENSMUSG00000114730 ENSMUST00000225869 Gm47014 processed_pseudogene Interval_143057 chr6 148971305 148972641 + 0 NA Intergenic Intergenic 4657 ENSMUSG00000080536.1 ENSMUSG00000080536 ENSMUST00000116886 Gm25539 snoRNA Interval_74687 chr17 55958862 55959600 + 0 NA promoter-TSS (ENSMUSG00000003208.9) protein_coding-promoter-TSS (ENSMUSG00000003208.9) 132 ENSMUSG00000003208.9 ENSMUSG00000003208 ENSMUST00000233226 Yju2 protein_coding Interval_92868 chr2 67257436 67257845 + 0 NA intron (ENSMUSG00000027022.14, intron 3 of 10) protein_coding-intron (ENSMUSG00000027022.14, intron 2 of 10) -62905 ENSMUSG00000086908.1 ENSMUSG00000086908 ENSMUST00000147939 Gm13598 lincRNA Interval_150142 chr7 107349069 107350129 + 0 NA Intergenic Intergenic -16473 ENSMUSG00000109078.1 ENSMUSG00000109078 ENSMUST00000208516 Gm19033 processed_pseudogene Interval_130064 chr5 124031199 124032704 + 0 NA promoter-TSS (ENSMUSG00000106261.1) lincRNA-promoter-TSS (ENSMUSG00000106261.1) 307 ENSMUSG00000066278.6 ENSMUSG00000066278 ENSMUST00000199741 Vps37b protein_coding Interval_106340 chr3 95493706 95494757 + 0 NA intron (ENSMUSG00000015522.18, intron 16 of 17) protein_coding-intron (ENSMUSG00000015522.18, intron 20 of 21) -5025 ENSMUSG00000028111.4 ENSMUSG00000028111 ENSMUST00000015664 Ctsk protein_coding Interval_166311 chr9 58243740 58244380 + 0 NA intron (ENSMUSG00000036986.16, intron 2 of 7) protein_coding-intron (ENSMUSG00000036986.16, intron 2 of 8) -9128 ENSMUSG00000032333.6 ENSMUSG00000032333 ENSMUST00000216864 Stoml1 protein_coding Interval_26701 chr11 59821374 59822276 + 0 NA intron (ENSMUSG00000019373.11, intron 6 of 6) protein_coding-intron (ENSMUSG00000019373.11, intron 8 of 11) 8688 ENSMUSG00000088950.1 ENSMUSG00000088950 ENSMUST00000158325 Gm24939 rRNA Interval_150173 chr7 107594026 107595668 + 0 NA promoter-TSS (ENSMUSG00000036528.16) protein_coding-promoter-TSS (ENSMUSG00000036528.16) 1897 ENSMUSG00000109374.1 ENSMUSG00000109374 ENSMUST00000207374 Gm44773 lincRNA Interval_44491 chr13 45356087 45357236 + 0 NA Intergenic Intergenic -34266 ENSMUSG00000038175.10 ENSMUSG00000038175 ENSMUST00000222178 Mylip protein_coding Interval_335 chr1 4228046 4228562 + 0 NA intron (ENSMUSG00000025900.13, intron 14 of 29) protein_coding-intron (ENSMUSG00000025900.13, intron 14 of 29) 32215 ENSMUSG00000102948.1 ENSMUSG00000102948 ENSMUST00000195384 Gm6101 processed_pseudogene Interval_58478 chr15 34982514 34983530 + 0 NA intron (ENSMUSG00000022329.15, intron 8 of 10) protein_coding-intron (ENSMUSG00000022329.15, intron 8 of 10) -22785 ENSMUSG00000022329.15 ENSMUSG00000022329 ENSMUST00000138841 Stk3 protein_coding Interval_72608 chr17 31011263 31012130 + 0 NA TTS (ENSMUSG00000054134.14) protein_coding-TTS (ENSMUSG00000054134.14) -41691 ENSMUSG00000118169.1 ENSMUSG00000118169 ENSMUST00000236274 Gm50249 antisense Interval_159449 chr8 94807544 94808406 + 0 NA Intergenic Intergenic -2478 ENSMUSG00000031780.2 ENSMUSG00000031780 ENSMUST00000034232 Ccl17 protein_coding Interval_97415 chr2 135957521 135958750 + 0 NA exon (ENSMUSG00000039943.16, exon 16 of 36) protein_coding-exon (ENSMUSG00000039943.16, exon 16 of 36) 68116 ENSMUSG00000064444.1 ENSMUSG00000064444 ENSMUST00000082510 Gm26227 snRNA Interval_78366 chr18 12198142 12198404 + 0 NA exon (ENSMUSG00000086935.1, exon 2 of 2) antisense-exon (ENSMUSG00000086935.1, exon 2 of 2) -4003 ENSMUSG00000024413.14 ENSMUSG00000024413 ENSMUST00000144435 Npc1 protein_coding Interval_153807 chr8 8774411 8775808 + 0 NA intron (ENSMUSG00000109371.1, intron 2 of 4) lincRNA-intron (ENSMUSG00000109371.1, intron 2 of 4) 39139 ENSMUSG00000109062.1 ENSMUSG00000109062 ENSMUST00000209128 Gm44622 lincRNA Interval_46103 chr13 61754832 61757078 + 0 NA Intergenic Intergenic 32367 ENSMUSG00000113899.1 ENSMUSG00000113899 ENSMUST00000222177 Gm9595 processed_pseudogene Interval_144149 chr7 19664124 19665818 + 0 NA promoter-TSS (ENSMUSG00000002981.10) protein_coding-promoter-TSS (ENSMUSG00000002981.10) 12970 ENSMUSG00000002992.17 ENSMUSG00000002992 ENSMUST00000134116 Apoc2 protein_coding Interval_49660 chr13 113844416 113846902 + 0 NA intron (ENSMUSG00000042348.10, intron 1 of 3) protein_coding-intron (ENSMUSG00000042348.10, intron 1 of 4) 51066 ENSMUSG00000042348.10 ENSMUSG00000042348 ENSMUST00000224068 Arl15 protein_coding Interval_50705 chr14 18365430 18366076 + 0 NA Intergenic Intergenic -34009 ENSMUSG00000021774.13 ENSMUSG00000021774 ENSMUST00000161580 Ube2e1 protein_coding Interval_92731 chr2 64731035 64731241 + 0 NA Intergenic Intergenic 137450 ENSMUSG00000084104.1 ENSMUSG00000084104 ENSMUST00000120849 Gm13578 processed_pseudogene Interval_59217 chr15 48819298 48819518 + 0 NA Intergenic Intergenic -27345 ENSMUSG00000022311.15 ENSMUSG00000022311 ENSMUST00000160655 Csmd3 protein_coding Interval_75895 chr17 72836139 72837693 + 0 NA promoter-TSS (ENSMUSG00000039770.6) protein_coding-promoter-TSS (ENSMUSG00000039770.6) -620 ENSMUSG00000039770.6 ENSMUSG00000039770 ENSMUST00000233662 Ypel5 protein_coding Interval_158450 chr8 83793233 83794254 + 0 NA Intergenic Intergenic 40825 ENSMUSG00000084682.1 ENSMUSG00000084682 ENSMUST00000122733 Gm22024 misc_RNA Interval_123160 chr5 30198113 30198691 + 0 NA exon (ENSMUSG00000067642.11, exon 9 of 14) protein_coding-exon (ENSMUSG00000067642.11, exon 9 of 14) 6185 ENSMUSG00000067642.11 ENSMUSG00000067642 ENSMUST00000135322 Adgrf3 protein_coding Interval_31759 chr11 102689942 102690750 + 0 NA intron (ENSMUSG00000020925.16, intron 2 of 4) protein_coding-intron (ENSMUSG00000020925.16, intron 2 of 4) 7388 ENSMUSG00000020925.16 ENSMUSG00000020925 ENSMUST00000138147 Ccdc43 protein_coding Interval_25449 chr11 48661696 48661931 + 0 NA Intergenic Intergenic -22896 ENSMUSG00000088425.1 ENSMUSG00000088425 ENSMUST00000157800 Gm24422 snoRNA Interval_3145 chr1 53983161 53984294 + 0 NA intron (ENSMUSG00000042807.15, intron 2 of 3) protein_coding-intron (ENSMUSG00000042807.15, intron 2 of 28) -96786 ENSMUSG00000087949.1 ENSMUSG00000087949 ENSMUST00000157324 Gm24251 snRNA Interval_26764 chr11 60319623 60319851 + 0 NA intron (ENSMUSG00000000538.18, intron 1 of 8) protein_coding-intron (ENSMUSG00000000538.18, intron 1 of 12) -16913 ENSMUSG00000098349.1 ENSMUSG00000098349 ENSMUST00000183802 Gm27711 miRNA Interval_38728 chr12 81662934 81664670 + 0 NA exon (ENSMUSG00000042734.6, exon 3 of 3) protein_coding-exon (ENSMUSG00000042734.6, exon 3 of 3) 32553 ENSMUSG00000042734.6 ENSMUSG00000042734 ENSMUST00000036116 Ttc9 protein_coding Interval_139797 chr6 108782697 108784204 + 0 NA intron (ENSMUSG00000030105.8, intron 1 of 6) protein_coding-intron (ENSMUSG00000030105.8, intron 1 of 6) -11447 ENSMUSG00000030105.8 ENSMUSG00000030105 ENSMUST00000204483 Arl8b protein_coding Interval_116978 chr4 118612421 118613135 + 0 NA intron (ENSMUSG00000028730.14, intron 3 of 21) protein_coding-intron (ENSMUSG00000028730.14, intron 4 of 22) 7627 ENSMUSG00000028730.14 ENSMUSG00000028730 ENSMUST00000081921 Cfap57 protein_coding Interval_87242 chr19 47151626 47152142 + 0 NA exon (ENSMUSG00000094219.1, exon 3 of 3) protein_coding-exon (ENSMUSG00000094219.1, exon 3 of 3) 5880 ENSMUSG00000094219.1 ENSMUSG00000094219 ENSMUST00000178630 Calhm3 protein_coding Interval_63734 chr15 103146433 103147862 + 0 NA promoter-TSS (ENSMUSG00000097003.1) lincRNA-promoter-TSS (ENSMUSG00000097003.1) -319 ENSMUSG00000097003.1 ENSMUSG00000097003 ENSMUST00000181306 D930007P13Rik lincRNA Interval_32966 chr11 113405204 113405905 + 0 NA intron (ENSMUSG00000041654.15, intron 5 of 5) protein_coding-intron (ENSMUSG00000041654.15, intron 6 of 10) -62423 ENSMUSG00000078251.2 ENSMUSG00000078251 ENSMUST00000105048 Gm16487 pseudogene Interval_98456 chr2 152505086 152505413 + 0 NA Intergenic Intergenic 6443 ENSMUSG00000074680.1 ENSMUSG00000074680 ENSMUST00000099205 Defb26 protein_coding Interval_54525 chr14 70473234 70473486 + 0 NA Intergenic Intergenic 13279 ENSMUSG00000022098.10 ENSMUSG00000022098 ENSMUST00000226539 Bmp1 protein_coding Interval_82670 chr18 75818865 75821299 + 0 NA promoter-TSS (ENSMUSG00000044646.15) protein_coding-promoter-TSS (ENSMUSG00000044646.15) -133 ENSMUSG00000044646.15 ENSMUSG00000044646 ENSMUST00000167921 Zbtb7c protein_coding Interval_29904 chr11 87656073 87656848 + 0 NA intron (ENSMUSG00000070345.3, intron 5 of 5) protein_coding-intron (ENSMUSG00000070345.3, intron 5 of 5) -6627 ENSMUSG00000034177.15 ENSMUSG00000034177 ENSMUST00000150866 Rnf43 protein_coding Interval_29601 chr11 85281420 85282342 + 0 NA Intergenic Intergenic 15868 ENSMUSG00000088136.1 ENSMUSG00000088136 ENSMUST00000157511 Gm22587 misc_RNA Interval_18459 chr10 86300057 86301095 + 0 NA promoter-TSS (ENSMUSG00000020044.13) protein_coding-promoter-TSS (ENSMUSG00000020044.13) 22 ENSMUSG00000020044.13 ENSMUSG00000020044 ENSMUST00000132307 Timp3 protein_coding Interval_16179 chr10 61248636 61250387 + 0 NA intron (ENSMUSG00000059901.12, intron 3 of 21) protein_coding-intron (ENSMUSG00000059901.12, intron 3 of 21) 23731 ENSMUSG00000059901.12 ENSMUSG00000059901 ENSMUST00000120336 Adamts14 protein_coding Interval_76692 chr17 83525741 83528080 + 0 NA Intergenic Intergenic -22404 ENSMUSG00000024248.14 ENSMUSG00000024248 ENSMUST00000234258 Cox7a2l protein_coding Interval_72901 chr17 33062311 33063559 + 0 NA Intergenic Intergenic 5090 ENSMUSG00000023350.6 ENSMUSG00000023350 ENSMUST00000234113 Phf8-ps transcribed_processed_pseudogene Interval_27081 chr11 62745910 62746680 + 0 NA Intergenic Intergenic -3557 ENSMUSG00000098292.1 ENSMUSG00000098292 ENSMUST00000175753 Gm27194 lincRNA Interval_79074 chr18 24347224 24347813 + 0 NA Intergenic Intergenic 8152 ENSMUSG00000117570.1 ENSMUSG00000117570 ENSMUST00000234938 Gm38410 lincRNA Interval_84903 chr19 18692124 18692356 + 0 NA intron (ENSMUSG00000024726.10, intron 5 of 7) protein_coding-intron (ENSMUSG00000024726.10, intron 5 of 7) 20911 ENSMUSG00000024726.10 ENSMUSG00000024726 ENSMUST00000236401 Carnmt1 protein_coding Interval_59830 chr15 59603880 59604578 + 0 NA Intergenic Intergenic -14361 ENSMUSG00000115896.1 ENSMUSG00000115896 ENSMUST00000229684 Gm36677 lincRNA Interval_52870 chr14 51382603 51384588 + 0 NA intron (ENSMUSG00000089761.3, intron 1 of 1) processed_transcript-intron (ENSMUSG00000089761.3, intron 1 of 1) 6247 ENSMUSG00000089761.3 ENSMUSG00000089761 ENSMUST00000161565 Vmn2r-ps111 processed_transcript Interval_91439 chr2 38881593 38881889 + 0 NA intron (ENSMUSG00000063972.13, intron 3 of 11) protein_coding-intron (ENSMUSG00000063972.13, intron 2 of 10) 19578 ENSMUSG00000107468.1 ENSMUSG00000107468 ENSMUST00000204297 5730507A11Rik TEC Interval_16139 chr10 60979529 60979930 + 0 NA Intergenic Intergenic 19006 ENSMUSG00000080526.1 ENSMUSG00000080526 ENSMUST00000116876 Mir466j miRNA Interval_68849 chr16 87580790 87581335 + 0 NA intron (ENSMUSG00000025610.7, intron 3 of 4) protein_coding-intron (ENSMUSG00000025610.7, intron 3 of 4) 27732 ENSMUSG00000025610.7 ENSMUSG00000025610 ENSMUST00000026700 Map3k7cl protein_coding Interval_37015 chr12 56414698 56415477 + 0 NA Intergenic Intergenic -4530 ENSMUSG00000112626.1 ENSMUSG00000112626 ENSMUST00000218947 Gm18027 processed_pseudogene Interval_101034 chr2 174409452 174410636 + 0 NA Intergenic Intergenic -13348 ENSMUSG00000016253.12 ENSMUSG00000016253 ENSMUST00000137986 Nelfcd protein_coding Interval_172132 chrX 7841113 7842617 + 0 NA promoter-TSS (ENSMUSG00000031154.15) protein_coding-promoter-TSS (ENSMUSG00000031154.15) 501 ENSMUSG00000031154.15 ENSMUSG00000031154 ENSMUST00000148841 Otud5 protein_coding Interval_82257 chr18 69706152 69706429 + 0 NA Intergenic Intergenic 71755 ENSMUSG00000064706.1 ENSMUSG00000064706 ENSMUST00000082772 Gm22508 misc_RNA Interval_39504 chr12 88801600 88801892 + 0 NA intron (ENSMUSG00000066392.12, intron 2 of 7) protein_coding-intron (ENSMUSG00000066392.12, intron 2 of 3) 169477 ENSMUSG00000113997.1 ENSMUSG00000113997 ENSMUST00000222440 1700040E09Rik lincRNA Interval_142256 chr6 140096458 140097275 + 0 NA Intergenic Intergenic -26368 ENSMUSG00000108047.1 ENSMUSG00000108047 ENSMUST00000203881 Gm44158 processed_pseudogene Interval_169265 chr9 95972209 95972586 + 0 NA exon (ENSMUSG00000032410.13, exon 1 of 1) protein_coding-exon (ENSMUSG00000032410.13, exon 1 of 1) 17535 ENSMUSG00000032410.13 ENSMUSG00000032410 ENSMUST00000187359 Xrn1 protein_coding Interval_140124 chr6 114462970 114463342 + 0 NA intron (ENSMUSG00000053004.9, intron 1 of 1) protein_coding-intron (ENSMUSG00000053004.9, intron 2 of 2) 59490 ENSMUSG00000053004.9 ENSMUSG00000053004 ENSMUST00000160780 Hrh1 protein_coding Interval_5060 chr1 84741521 84741745 + 0 NA intron (ENSMUSG00000026219.14, intron 7 of 17) protein_coding-intron (ENSMUSG00000026219.14, intron 30 of 40) -12757 ENSMUSG00000026219.14 ENSMUSG00000026219 ENSMUST00000187818 Trip12 protein_coding Interval_174794 chrX 166652541 166653207 + 0 NA Intergenic Intergenic -9151 ENSMUSG00000086860.1 ENSMUSG00000086860 ENSMUST00000135086 Gm1720 lincRNA Interval_69358 chr16 92444986 92445849 + 0 NA intron (ENSMUSG00000022951.16, intron 1 of 3) protein_coding-intron (ENSMUSG00000022951.16, intron 1 of 3) -12060 ENSMUSG00000116964.1 ENSMUSG00000116964 ENSMUST00000231968 Gm46555 antisense Interval_116843 chr4 117636810 117637778 + 0 NA promoter-TSS (ENSMUSG00000033423.16) protein_coding-promoter-TSS (ENSMUSG00000033423.16) 44959 ENSMUSG00000009640.11 ENSMUSG00000009640 ENSMUST00000127750 Dmap1 protein_coding Interval_67316 chr16 45991411 45991738 + 0 NA intron (ENSMUSG00000087141.1, intron 1 of 3) protein_coding-intron (ENSMUSG00000087141.1, intron 1 of 3) 18644 ENSMUSG00000087141.1 ENSMUSG00000087141 ENSMUST00000130481 Plcxd2 protein_coding Interval_32441 chr11 107554979 107556212 + 0 NA intron (ENSMUSG00000020721.16, intron 3 of 4) protein_coding-intron (ENSMUSG00000020721.16, intron 2 of 31) -7222 ENSMUSG00000059706.4 ENSMUSG00000059706 ENSMUST00000147445 A830035A12Rik processed_transcript Interval_37341 chr12 65232739 65233135 + 0 NA exon (ENSMUSG00000035560.5, exon 3 of 3) protein_coding-exon (ENSMUSG00000035560.5, exon 3 of 3) 6869 ENSMUSG00000035560.5 ENSMUSG00000035560 ENSMUST00000222822 Wdr20rt protein_coding Interval_90255 chr2 29346345 29347271 + 0 NA promoter-TSS (ENSMUSG00000026799.15) protein_coding-promoter-TSS (ENSMUSG00000026799.15) 49651 ENSMUSG00000086994.1 ENSMUSG00000086994 ENSMUST00000153600 Gm13402 antisense Interval_169199 chr9 95462380 95462817 + 0 NA intron (ENSMUSG00000032407.14, intron 27 of 27) protein_coding-intron (ENSMUSG00000032407.14, intron 26 of 26) 36968 ENSMUSG00000101459.1 ENSMUSG00000101459 ENSMUST00000190263 Gm19193 processed_pseudogene Interval_65301 chr16 21367607 21368625 + 0 NA Intergenic Intergenic -34987 ENSMUSG00000116632.1 ENSMUSG00000116632 ENSMUST00000231972 Magef1 transcribed_processed_pseudogene Interval_63089 chr15 99018202 99019358 + 0 NA Intergenic Intergenic -11541 ENSMUSG00000043091.9 ENSMUSG00000043091 ENSMUST00000230447 Tuba1c protein_coding Interval_1682 chr1 31074740 31076158 + 0 NA intron (ENSMUSG00000086727.8, intron 3 of 5) protein_coding-intron (ENSMUSG00000086727.8, intron 3 of 5) 33530 ENSMUSG00000100237.1 ENSMUSG00000100237 ENSMUST00000191364 Gm28644 lincRNA Interval_19669 chr10 107618256 107618605 + 0 NA intron (ENSMUSG00000035916.8, intron 25 of 44) protein_coding-intron (ENSMUSG00000035916.8, intron 25 of 44) 101597 ENSMUSG00000035916.8 ENSMUSG00000035916 ENSMUST00000218399 Ptprq protein_coding Interval_15531 chr10 50838958 50839464 + 0 NA intron (ENSMUSG00000038774.9, intron 4 of 5) protein_coding-intron (ENSMUSG00000038774.9, intron 37 of 41) 25486 ENSMUSG00000112594.1 ENSMUSG00000112594 ENSMUST00000220349 Gm48333 processed_pseudogene Interval_107077 chr3 103362293 103362688 + 0 NA Intergenic Intergenic 30347 ENSMUSG00000104925.1 ENSMUSG00000104925 ENSMUST00000198850 Gm43061 sense_intronic Interval_80053 chr18 36969662 36969864 + 0 NA promoter-TSS (ENSMUSG00000102836.1) protein_coding-promoter-TSS (ENSMUSG00000102836.1) -153 ENSMUSG00000102836.1 ENSMUSG00000102836 ENSMUST00000194544 Gm37013 protein_coding Interval_94414 chr2 91053713 91054870 + 0 NA promoter-TSS (ENSMUSG00000002102.15) protein_coding-promoter-TSS (ENSMUSG00000002102.15) 13 ENSMUSG00000002102.15 ENSMUSG00000002102 ENSMUST00000145317 Psmc3 protein_coding Interval_11913 chr1 187061829 187063276 + 0 NA intron (ENSMUSG00000026611.17, intron 9 of 10) protein_coding-intron (ENSMUSG00000026611.17, intron 9 of 9) 10783 ENSMUSG00000089831.1 ENSMUSG00000089831 ENSMUST00000160330 Gm15508 processed_pseudogene Interval_101903 chr3 10747545 10747906 + 0 NA Intergenic Intergenic 6703 ENSMUSG00000104185.1 ENSMUSG00000104185 ENSMUST00000193047 Gm18692 processed_pseudogene Interval_21008 chr10 123200340 123201145 + 0 NA Intergenic Intergenic -3747 ENSMUSG00000020124.10 ENSMUSG00000020124 ENSMUST00000219619 Usp15 protein_coding Interval_146110 chr7 43979808 43980066 + 0 NA TTS (ENSMUSG00000108730.1) unprocessed_pseudogene-TTS (ENSMUSG00000108730.1) -3364 ENSMUSG00000108432.1 ENSMUSG00000108432 ENSMUST00000206172 Gm44756 antisense Interval_9380 chr1 156673769 156674709 + 0 NA promoter-TSS (ENSMUSG00000060519.11) protein_coding-promoter-TSS (ENSMUSG00000060519.11) 96 ENSMUSG00000060519.11 ENSMUSG00000060519 ENSMUST00000190607 Tor3a protein_coding Interval_73518 chr17 38747465 38747778 + 0 NA Intergenic Intergenic 5108 ENSMUSG00000117331.1 ENSMUSG00000117331 ENSMUST00000232981 Gm49816 unprocessed_pseudogene Interval_112578 chr4 43362531 43362862 + 0 NA intron (ENSMUSG00000028457.18, intron 19 of 28) protein_coding-intron (ENSMUSG00000028457.18, intron 20 of 29) -52000 ENSMUSG00000035969.15 ENSMUSG00000035969 ENSMUST00000123447 Rusc2 protein_coding Interval_70821 chr17 15088569 15088976 + 0 NA intron (ENSMUSG00000036552.19, intron 7 of 7) protein_coding-intron (ENSMUSG00000036552.19, intron 7 of 7) 35930 ENSMUSG00000036552.19 ENSMUSG00000036552 ENSMUST00000186130 Ermard protein_coding Interval_22111 chr11 6405218 6406813 + 0 NA TTS (ENSMUSG00000041164.15) protein_coding-TTS (ENSMUSG00000041164.15) 4385 ENSMUSG00000098516.1 ENSMUSG00000098516 ENSMUST00000184154 Mir7651 miRNA Interval_174450 chrX 152618568 152618848 + 0 NA TTS (ENSMUSG00000045180.13) protein_coding-TTS (ENSMUSG00000045180.13) 53496 ENSMUSG00000081993.1 ENSMUSG00000081993 ENSMUST00000118211 Gm8475 processed_pseudogene Interval_1811 chr1 33943914 33947101 + 0 NA intron (ENSMUSG00000026131.20, intron 2 of 102) protein_coding-intron (ENSMUSG00000026131.20, intron 2 of 102) 18178 ENSMUSG00000099382.1 ENSMUSG00000099382 ENSMUST00000190740 Gm28631 processed_pseudogene Interval_139241 chr6 97457232 97458190 + 0 NA intron (ENSMUSG00000030064.16, intron 2 of 7) protein_coding-intron (ENSMUSG00000030064.16, intron 1 of 22) 7961 ENSMUSG00000108185.1 ENSMUSG00000108185 ENSMUST00000204326 Gm19653 processed_pseudogene Interval_25399 chr11 47461810 47462167 + 0 NA intron (ENSMUSG00000020354.15, intron 2 of 2) protein_coding-intron (ENSMUSG00000020354.15, intron 1 of 6) -79444 ENSMUSG00000082792.1 ENSMUSG00000082792 ENSMUST00000121420 Gm12176 processed_pseudogene Interval_168967 chr9 89826779 89827857 + 0 NA exon (ENSMUSG00000098627.7, exon 1 of 4) lincRNA-exon (ENSMUSG00000098627.7, exon 1 of 4) 336 ENSMUSG00000098627.7 ENSMUSG00000098627 ENSMUST00000184759 4930524O08Rik lincRNA Interval_136850 chr6 61371616 61372330 + 0 NA intron (ENSMUSG00000039578.17, intron 1 of 3) protein_coding-intron (ENSMUSG00000039578.17, intron 2 of 9) -28634 ENSMUSG00000107757.1 ENSMUSG00000107757 ENSMUST00000204456 Gm43898 processed_pseudogene Interval_92380 chr2 59383189 59386239 + 0 NA exon (ENSMUSG00000087455.7, exon 2 of 3) processed_transcript-exon (ENSMUSG00000087455.7, exon 2 of 3) 2757 ENSMUSG00000087455.7 ENSMUSG00000087455 ENSMUST00000155111 5330411J11Rik processed_transcript Interval_69523 chr16 94030042 94030724 + 0 NA Intergenic Intergenic 14441 ENSMUSG00000116939.1 ENSMUSG00000116939 ENSMUST00000232441 Gm49619 processed_pseudogene Interval_114526 chr4 82279898 82280220 + 0 NA Intergenic Intergenic -159351 ENSMUSG00000084595.1 ENSMUSG00000084595 ENSMUST00000122646 n-R5s188 rRNA Interval_69401 chr16 92757755 92758048 + 0 NA intron (ENSMUSG00000022952.17, intron 1 of 1) protein_coding-intron (ENSMUSG00000022952.17, intron 2 of 7) 68173 ENSMUSG00000022952.17 ENSMUSG00000022952 ENSMUST00000189679 Runx1 protein_coding Interval_119043 chr4 135174856 135175925 + 0 NA exon (ENSMUSG00000070691.10, exon 6 of 6) protein_coding-exon (ENSMUSG00000070691.10, exon 6 of 6) 22452 ENSMUSG00000070691.10 ENSMUSG00000070691 ENSMUST00000127109 Runx3 protein_coding Interval_126476 chr5 88807504 88808060 + 0 NA intron (ENSMUSG00000105640.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000105640.1, intron 1 of 1) -2559 ENSMUSG00000106305.1 ENSMUSG00000106305 ENSMUST00000199360 Gm42911 processed_pseudogene Interval_139322 chr6 98843019 98843239 + 0 NA Intergenic Intergenic 17686 ENSMUSG00000107514.1 ENSMUSG00000107514 ENSMUST00000203192 Gm32381 processed_pseudogene Interval_1946 chr1 34842406 34843773 + 0 NA promoter-TSS (ENSMUSG00000037503.12) protein_coding-promoter-TSS (ENSMUSG00000037503.12) -55 ENSMUSG00000037503.12 ENSMUSG00000037503 ENSMUST00000140534 Fam168b protein_coding Interval_105328 chr3 84987845 84988053 + 0 NA intron (ENSMUSG00000102805.5, intron 3 of 9) protein_coding-intron (ENSMUSG00000102805.5, intron 3 of 9) 114058 ENSMUSG00000102919.1 ENSMUSG00000102919 ENSMUST00000193246 Gm37726 TEC Interval_134989 chr6 34354464 34355023 + 0 NA intron (ENSMUSG00000029762.6, intron 1 of 9) protein_coding-intron (ENSMUSG00000029762.6, intron 1 of 9) -1372 ENSMUSG00000029762.6 ENSMUSG00000029762 ENSMUST00000133370 Akr1b8 protein_coding Interval_139990 chr6 113246904 113248196 + 0 NA intron (ENSMUSG00000030269.14, intron 2 of 6) protein_coding-intron (ENSMUSG00000030269.14, intron 2 of 18) -8282 ENSMUSG00000030269.14 ENSMUSG00000030269 ENSMUST00000151149 Mtmr14 protein_coding Interval_119937 chr4 141021154 141021907 + 0 NA TTS (ENSMUSG00000040860.16) protein_coding-TTS (ENSMUSG00000040860.16) 11112 ENSMUSG00000060572.17 ENSMUSG00000060572 ENSMUST00000071977 Mfap2 protein_coding Interval_89376 chr2 20176304 20177383 + 0 NA intron (ENSMUSG00000036617.17, intron 2 of 7) protein_coding-intron (ENSMUSG00000036617.17, intron 2 of 7) 59221 ENSMUSG00000081128.1 ENSMUSG00000081128 ENSMUST00000120816 Gm13328 processed_pseudogene Interval_97315 chr2 133663468 133664173 + 0 NA Intergenic Intergenic -79399 ENSMUSG00000064983.1 ENSMUSG00000064983 ENSMUST00000083049 Gm25258 snRNA Interval_67854 chr16 58005245 58005481 + 0 NA exon (ENSMUSG00000116770.1, exon 1 of 2) lincRNA-exon (ENSMUSG00000116770.1, exon 1 of 2) 660 ENSMUSG00000116770.1 ENSMUSG00000116770 ENSMUST00000231442 Gm49576 lincRNA Interval_163061 chr9 14903730 14904493 + 0 NA promoter-TSS (ENSMUSG00000031933.17) protein_coding-promoter-TSS (ENSMUSG00000031933.17) -357 ENSMUSG00000031933.17 ENSMUSG00000031933 ENSMUST00000148155 Izumo1r protein_coding Interval_51214 chr14 25079750 25080838 + 0 NA Intergenic Intergenic -5850 ENSMUSG00000114924.1 ENSMUSG00000114924 ENSMUST00000224815 Gm38408 lincRNA Interval_115954 chr4 106582316 106583513 + 0 NA intron (ENSMUSG00000034926.3, intron 6 of 8) protein_coding-intron (ENSMUSG00000034926.3, intron 6 of 8) 6194 ENSMUSG00000085023.1 ENSMUSG00000085023 ENSMUST00000146976 Gm12744 antisense Interval_93442 chr2 73082070 73082959 + 0 NA Intergenic Intergenic -34234 ENSMUSG00000082455.3 ENSMUSG00000082455 ENSMUST00000120830 Gm13665 processed_pseudogene Interval_41588 chr12 116585096 116585578 + 0 NA intron (ENSMUSG00000056553.14, intron 2 of 4) protein_coding-intron (ENSMUSG00000056553.14, intron 2 of 22) -11916 ENSMUSG00000101814.1 ENSMUSG00000101814 ENSMUST00000186869 Gm17807 processed_pseudogene Interval_142306 chr6 140563957 140564206 + 0 NA intron (ENSMUSG00000030231.11, intron 10 of 19) protein_coding-intron (ENSMUSG00000030231.11, intron 10 of 19) 513 ENSMUSG00000030231.11 ENSMUSG00000030231 ENSMUST00000204528 Plekha5 protein_coding Interval_38979 chr12 84245840 84246735 + 0 NA Intergenic Intergenic 12686 ENSMUSG00000042962.5 ENSMUSG00000042962 ENSMUST00000058103 Gm5436 processed_pseudogene Interval_79002 chr18 23854156 23854544 + 0 NA intron (ENSMUSG00000024277.14, intron 4 of 7) protein_coding-intron (ENSMUSG00000024277.14, intron 3 of 6) -36979 ENSMUSG00000089290.1 ENSMUSG00000089290 ENSMUST00000158665 Gm23207 snRNA Interval_135975 chr6 49202299 49203423 + 0 NA intron (ENSMUSG00000029814.10, intron 2 of 3) protein_coding-intron (ENSMUSG00000029814.10, intron 2 of 14) 30102 ENSMUSG00000107727.1 ENSMUSG00000107727 ENSMUST00000203553 Gm18010 processed_pseudogene Interval_91845 chr2 50190314 50190936 + 0 NA TTS (ENSMUSG00000050447.15) protein_coding-TTS (ENSMUSG00000050447.15) 62256 ENSMUSG00000050447.15 ENSMUSG00000050447 ENSMUST00000126337 Lypd6 protein_coding Interval_110835 chr4 8847426 8847625 + 0 NA exon (ENSMUSG00000041235.12, exon 23 of 38) protein_coding-exon (ENSMUSG00000041235.12, exon 23 of 38) -7706 ENSMUSG00000041235.12 ENSMUSG00000041235 ENSMUST00000222546 Chd7 protein_coding Interval_51028 chr14 21666125 21666432 + 0 NA intron (ENSMUSG00000021767.19, intron 15 of 15) protein_coding-intron (ENSMUSG00000021767.19, intron 16 of 16) 36824 ENSMUSG00000063821.6 ENSMUSG00000063821 ENSMUST00000224735 Dupd1 protein_coding Interval_57573 chr15 12464848 12465453 + 0 NA intron (ENSMUSG00000022197.16, intron 3 of 4) protein_coding-intron (ENSMUSG00000022197.16, intron 1 of 23) -52770 ENSMUSG00000022197.16 ENSMUSG00000022197 ENSMUST00000189746 Pdzd2 protein_coding Interval_158810 chr8 86812022 86812410 + 0 NA intron (ENSMUSG00000031652.11, intron 1 of 1) protein_coding-intron (ENSMUSG00000031652.11, intron 1 of 1) 40204 ENSMUSG00000031652.11 ENSMUSG00000031652 ENSMUST00000210029 N4bp1 protein_coding Interval_116646 chr4 116283450 116284574 + 0 NA intron (ENSMUSG00000111410.1, intron 5 of 9) protein_coding-intron (ENSMUSG00000028698.13, intron 5 of 9) 62394 ENSMUSG00000028698.13 ENSMUSG00000028698 ENSMUST00000106490 Pik3r3 protein_coding Interval_145931 chr7 42402512 42402777 + 0 NA Intergenic Intergenic 24185 ENSMUSG00000092382.2 ENSMUSG00000092382 ENSMUST00000174596 Vmn2r-ps59 unprocessed_pseudogene Interval_144361 chr7 24674266 24675337 + 0 NA intron (ENSMUSG00000062773.6, intron 2 of 6) protein_coding-intron (ENSMUSG00000062773.6, intron 2 of 6) 1874 ENSMUSG00000062773.6 ENSMUSG00000062773 ENSMUST00000206390 Tex101 protein_coding Interval_57454 chr15 11138591 11139564 + 0 NA intron (ENSMUSG00000047497.10, intron 2 of 2) protein_coding-intron (ENSMUSG00000047497.10, intron 2 of 23) 74259 ENSMUSG00000047497.10 ENSMUSG00000047497 ENSMUST00000228940 Adamts12 protein_coding Interval_55726 chr14 99333857 99334426 + 0 NA Intergenic Intergenic 18028 ENSMUSG00000084700.1 ENSMUSG00000084700 ENSMUST00000122751 Gm22984 snRNA Interval_144660 chr7 27375263 27375624 + 0 NA exon (ENSMUSG00000011751.16, exon 21 of 36) protein_coding-exon (ENSMUSG00000011751.16, exon 21 of 36) -18024 ENSMUSG00000092367.1 ENSMUSG00000092367 ENSMUST00000126587 Gm20479 protein_coding Interval_150605 chr7 112770330 112771689 + 0 NA intron (ENSMUSG00000055320.18, intron 2 of 13) protein_coding-intron (ENSMUSG00000055320.18, intron 2 of 13) 57058 ENSMUSG00000106046.1 ENSMUSG00000106046 ENSMUST00000199696 Gm44462 miRNA Interval_10667 chr1 172549562 172551029 + 0 NA exon (ENSMUSG00000085184.9, exon 2 of 2) processed_transcript-exon (ENSMUSG00000085184.9, exon 2 of 2) 7834 ENSMUSG00000085184.9 ENSMUSG00000085184 ENSMUST00000169111 4933439K11Rik processed_transcript Interval_31639 chr11 101932022 101932276 + 0 NA Intergenic Intergenic -7352 ENSMUSG00000082171.1 ENSMUSG00000082171 ENSMUST00000120378 Rpl27-ps2 processed_pseudogene Interval_133852 chr6 13437342 13437571 + 0 NA Intergenic Intergenic 24119 ENSMUSG00000101894.1 ENSMUSG00000101894 ENSMUST00000186770 1700016P04Rik lincRNA Interval_59543 chr15 55167212 55168008 + 0 NA intron (ENSMUSG00000022419.16, intron 3 of 4) protein_coding-intron (ENSMUSG00000022419.16, intron 3 of 8) 34157 ENSMUSG00000022419.16 ENSMUSG00000022419 ENSMUST00000226687 Deptor protein_coding Interval_164857 chr9 42512039 42513123 + 0 NA Intergenic Intergenic 8250 ENSMUSG00000093745.1 ENSMUSG00000093745 ENSMUST00000176676 Gm24420 misc_RNA Interval_155062 chr8 26060686 26061179 + 0 NA intron (ENSMUSG00000037234.17, intron 4 of 6) protein_coding-intron (ENSMUSG00000037234.17, intron 14 of 21) 5120 ENSMUSG00000109640.1 ENSMUSG00000109640 ENSMUST00000210389 Gm45413 TEC Interval_103388 chr3 41123384 41124677 + 0 NA Intergenic Intergenic 48633 ENSMUSG00000105258.1 ENSMUSG00000105258 ENSMUST00000197878 Gm40038 lincRNA Interval_127387 chr5 103663899 103666144 + 0 NA Intergenic Intergenic 6784 ENSMUSG00000088121.1 ENSMUSG00000088121 ENSMUST00000157496 Gm25721 snRNA Interval_168948 chr9 89495512 89496219 + 0 NA Intergenic Intergenic 64519 ENSMUSG00000111806.1 ENSMUSG00000111806 ENSMUST00000217127 Gm47403 lincRNA Interval_15837 chr10 57848213 57848898 + 0 NA Intergenic Intergenic 54220 ENSMUSG00000019872.13 ENSMUSG00000019872 ENSMUST00000125076 Smpdl3a protein_coding Interval_70340 chr17 8639794 8640456 + 0 NA intron (ENSMUSG00000023868.17, intron 1 of 3) protein_coding-intron (ENSMUSG00000023868.17, intron 1 of 21) -71265 ENSMUSG00000084390.1 ENSMUSG00000084390 ENSMUST00000119013 Gm15425 processed_pseudogene Interval_21105 chr10 126434692 126435530 + 0 NA Intergenic Intergenic 63136 ENSMUSG00000112482.1 ENSMUSG00000112482 ENSMUST00000218075 1700025K04Rik lincRNA Interval_123371 chr5 31942299 31942490 + 0 NA intron (ENSMUSG00000052139.18, intron 5 of 6) protein_coding-intron (ENSMUSG00000052139.18, intron 9 of 13) 15697 ENSMUSG00000107140.1 ENSMUSG00000107140 ENSMUST00000202862 Gm43811 TEC Interval_113970 chr4 62103220 62103595 + 0 NA Intergenic Intergenic -9524 ENSMUSG00000086530.1 ENSMUSG00000086530 ENSMUST00000135902 Gm12910 antisense Interval_25571 chr11 49854479 49855591 + 0 NA intron (ENSMUSG00000020366.18, intron 2 of 6) protein_coding-intron (ENSMUSG00000020366.18, intron 2 of 11) 8284 ENSMUSG00000020366.18 ENSMUSG00000020366 ENSMUST00000043321 Mapk9 protein_coding Interval_104237 chr3 61467074 61467732 + 0 NA Intergenic Intergenic -4542 ENSMUSG00000098208.1 ENSMUSG00000098208 ENSMUST00000182720 Gm8349 processed_pseudogene Interval_130074 chr5 124089939 124090247 + 0 NA exon (ENSMUSG00000029408.13, exon 2 of 12) protein_coding-exon (ENSMUSG00000029408.13, exon 2 of 12) -10962 ENSMUSG00000029408.13 ENSMUSG00000029408 ENSMUST00000126970 Abcb9 protein_coding Interval_75341 chr17 66008050 66008960 + 0 NA intron (ENSMUSG00000034647.15, intron 8 of 8) protein_coding-intron (ENSMUSG00000034647.15, intron 8 of 12) 2800 ENSMUSG00000117074.1 ENSMUSG00000117074 ENSMUST00000233477 Gm49925 processed_pseudogene Interval_49521 chr13 112674104 112674699 + 0 NA TTS (ENSMUSG00000047789.5) protein_coding-TTS (ENSMUSG00000047789.5) 11295 ENSMUSG00000114438.1 ENSMUSG00000114438 ENSMUST00000224584 Gm47827 antisense Interval_34985 chr12 16354297 16354741 + 0 NA Intergenic Intergenic -122292 ENSMUSG00000113892.1 ENSMUSG00000113892 ENSMUST00000220475 Gm48605 lincRNA Interval_108893 chr3 133060356 133061271 + 0 NA intron (ENSMUSG00000028018.15, intron 5 of 9) protein_coding-intron (ENSMUSG00000028018.15, intron 5 of 11) -6543 ENSMUSG00000105217.1 ENSMUSG00000105217 ENSMUST00000196110 Gm42873 TEC Interval_141559 chr6 129247986 129248381 + 0 NA intron (ENSMUSG00000112144.1, intron 5 of 5) lincRNA-intron (ENSMUSG00000112144.1, intron 4 of 4) 9907 ENSMUSG00000112144.1 ENSMUSG00000112144 ENSMUST00000218416 Gm47861 lincRNA Interval_33631 chr11 117636289 117636597 + 0 NA Intergenic Intergenic 25196 ENSMUSG00000054418.6 ENSMUSG00000054418 ENSMUST00000155384 2900041M22Rik processed_transcript Interval_93281 chr2 71669597 71669828 + 0 NA Intergenic Intergenic -49705 ENSMUSG00000064263.6 ENSMUSG00000064263 ENSMUST00000079720 Platr26 lincRNA Interval_134310 chr6 24860280 24860709 + 0 NA intron (ENSMUSG00000029678.8, intron 1 of 3) protein_coding-intron (ENSMUSG00000029678.8, intron 1 of 3) 23200 ENSMUSG00000107223.1 ENSMUSG00000107223 ENSMUST00000202426 Gm18327 processed_pseudogene Interval_41915 chr13 4350476 4351085 + 0 NA exon (ENSMUSG00000113175.1, exon 3 of 3) transcribed_unprocessed_pseudogene-exon (ENSMUSG00000113175.1, exon 3 of 3) -17901 ENSMUSG00000113004.1 ENSMUSG00000113004 ENSMUST00000221635 Gm47951 processed_pseudogene Interval_29922 chr11 87763490 87764901 + 0 NA promoter-TSS (ENSMUSG00000034156.16) protein_coding-promoter-TSS (ENSMUSG00000034156.16) -7240 ENSMUSG00000065420.2 ENSMUSG00000065420 ENSMUST00000083486 Mir142b miRNA Interval_19053 chr10 94097127 94097989 + 0 NA TTS (ENSMUSG00000110753.1) processed_pseudogene-TTS (ENSMUSG00000110753.1) 582 ENSMUSG00000110753.1 ENSMUSG00000110753 ENSMUST00000217189 Gm18391 processed_pseudogene Interval_139530 chr6 100823228 100824810 + 0 NA Intergenic Intergenic -28466 ENSMUSG00000052144.8 ENSMUSG00000052144 ENSMUST00000203067 Ppp4r2 protein_coding Interval_8549 chr1 141475540 141475740 + 0 NA Intergenic Intergenic -52494 ENSMUSG00000104147.1 ENSMUSG00000104147 ENSMUST00000193718 Gm37142 TEC Interval_74537 chr17 53116551 53117850 + 0 NA Intergenic Intergenic -79251 ENSMUSG00000117244.1 ENSMUSG00000117244 ENSMUST00000233156 Gm9210 processed_pseudogene Interval_167756 chr9 72562145 72563282 + 0 NA intron (ENSMUSG00000037674.15, intron 2 of 5) protein_coding-intron (ENSMUSG00000037674.15, intron 1 of 8) 10985 ENSMUSG00000099310.1 ENSMUSG00000099310 ENSMUST00000183619 Gm19427 processed_pseudogene Interval_168584 chr9 83833922 83835426 + 0 NA promoter-TSS (ENSMUSG00000038379.15) protein_coding-promoter-TSS (ENSMUSG00000038379.15) -92 ENSMUSG00000038379.15 ENSMUSG00000038379 ENSMUST00000191484 Ttk protein_coding Interval_9439 chr1 157094377 157095224 + 0 NA Intergenic Intergenic 13849 ENSMUSG00000026592.13 ENSMUSG00000026592 ENSMUST00000148649 Tex35 protein_coding Interval_4041 chr1 66772893 66773448 + 0 NA intron (ENSMUSG00000026004.15, intron 3 of 13) protein_coding-intron (ENSMUSG00000026004.15, intron 4 of 13) -1304 ENSMUSG00000102374.1 ENSMUSG00000102374 ENSMUST00000191945 Gm38387 TEC Interval_125158 chr5 64986768 64987101 + 0 NA intron (ENSMUSG00000029185.14, intron 2 of 3) protein_coding-intron (ENSMUSG00000029185.14, intron 2 of 13) 14284 ENSMUSG00000106186.1 ENSMUSG00000106186 ENSMUST00000197119 Gm43627 TEC Interval_105788 chr3 89339166 89339691 + 0 NA TTS (ENSMUSG00000028041.17) protein_coding-TTS (ENSMUSG00000028041.17) -1400 ENSMUSG00000028040.7 ENSMUSG00000028040 ENSMUST00000029674 Efna4 protein_coding Interval_143526 chr7 11947899 11948258 + 0 NA Intergenic Intergenic 5325 ENSMUSG00000110271.1 ENSMUSG00000110271 ENSMUST00000209792 Gm45387 processed_pseudogene Interval_133507 chr6 6023297 6024305 + 0 NA intron (ENSMUSG00000029757.16, intron 2 of 2) protein_coding-intron (ENSMUSG00000029757.16, intron 15 of 15) -46408 ENSMUSG00000085416.1 ENSMUSG00000085416 ENSMUST00000130004 1700019G24Rik antisense Interval_15719 chr10 54637062 54637354 + 0 NA Intergenic Intergenic 34496 ENSMUSG00000112882.1 ENSMUSG00000112882 ENSMUST00000218122 Gm47970 processed_pseudogene Interval_74152 chr17 46817585 46818032 + 0 NA intron (ENSMUSG00000036568.7, intron 5 of 11) protein_coding-intron (ENSMUSG00000036568.7, intron 4 of 10) 14506 ENSMUSG00000036568.7 ENSMUSG00000036568 ENSMUST00000233455 Bicral protein_coding Interval_133159 chr5 150250390 150250639 + 0 NA intron (ENSMUSG00000056602.12, intron 1 of 3) protein_coding-intron (ENSMUSG00000056602.12, intron 2 of 4) 6651 ENSMUSG00000107082.1 ENSMUSG00000107082 ENSMUST00000201709 Gm36378 processed_pseudogene Interval_12007 chr1 188763345 188764295 + 0 NA intron (ENSMUSG00000026609.15, intron 46 of 70) protein_coding-intron (ENSMUSG00000026609.15, intron 46 of 70) 3344 ENSMUSG00000084550.1 ENSMUSG00000084550 ENSMUST00000122601 Gm25269 snRNA Interval_147225 chr7 64802312 64802586 + 0 NA intron (ENSMUSG00000030518.17, intron 3 of 6) protein_coding-intron (ENSMUSG00000030518.17, intron 4 of 9) 57866 ENSMUSG00000030519.14 ENSMUSG00000030519 ENSMUST00000206630 Apba2 protein_coding Interval_101937 chr3 12480713 12480996 + 0 NA Intergenic Intergenic -96245 ENSMUSG00000103339.1 ENSMUSG00000103339 ENSMUST00000191859 Gm37996 processed_pseudogene Interval_33358 chr11 116107661 116108179 + 0 NA promoter-TSS (ENSMUSG00000020773.11) protein_coding-promoter-TSS (ENSMUSG00000020773.11) -837 ENSMUSG00000020773.11 ENSMUSG00000020773 ENSMUST00000133039 Trim47 protein_coding Interval_58459 chr15 34824009 34825237 + 0 NA exon (ENSMUSG00000115360.1, exon 1 of 1) TEC-exon (ENSMUSG00000115360.1, exon 1 of 1) 1806 ENSMUSG00000115360.1 ENSMUSG00000115360 ENSMUST00000226322 Gm48932 TEC Interval_39941 chr12 99958262 99959509 + 0 NA Intergenic Intergenic -5614 ENSMUSG00000045404.16 ENSMUSG00000045404 ENSMUST00000049788 Kcnk13 protein_coding Interval_23035 chr11 19143106 19143372 + 0 NA Intergenic Intergenic -25805 ENSMUSG00000102585.1 ENSMUSG00000102585 ENSMUST00000193150 Gm37439 TEC Interval_125485 chr5 67530296 67531261 + 0 NA Intergenic Intergenic 66875 ENSMUSG00000107385.3 ENSMUSG00000107385 ENSMUST00000202828 C330024D21Rik processed_transcript Interval_33310 chr11 115841296 115843912 + 0 NA intron (ENSMUSG00000020782.18, intron 2 of 25) protein_coding-intron (ENSMUSG00000020782.18, intron 2 of 25) 18546 ENSMUSG00000020782.18 ENSMUSG00000020782 ENSMUST00000132999 Llgl2 protein_coding Interval_69678 chr16 95350420 95350715 + 0 NA intron (ENSMUSG00000116720.1, intron 1 of 1) antisense-intron (ENSMUSG00000116720.1, intron 1 of 1) 5109 ENSMUSG00000116720.1 ENSMUSG00000116720 ENSMUST00000232605 Gm31641 antisense Interval_63651 chr15 102554400 102554594 + 0 NA intron (ENSMUSG00000099083.7, intron 3 of 5) protein_coding-intron (ENSMUSG00000099083.7, intron 4 of 10) -29555 ENSMUSG00000023052.8 ENSMUSG00000023052 ENSMUST00000184659 Npff protein_coding Interval_17078 chr10 71225862 71226634 + 0 NA exon (ENSMUSG00000003923.14, exon 7 of 7) protein_coding-exon (ENSMUSG00000003923.14, exon 7 of 7) 10794 ENSMUSG00000003923.14 ENSMUSG00000003923 ENSMUST00000152505 Tfam protein_coding Interval_38691 chr12 81041776 81042273 + 0 NA intron (ENSMUSG00000021136.13, intron 1 of 11) protein_coding-intron (ENSMUSG00000021136.13, intron 1 of 12) 15196 ENSMUSG00000021136.13 ENSMUSG00000021136 ENSMUST00000129362 Smoc1 protein_coding Interval_58417 chr15 34367143 34368691 + 0 NA intron (ENSMUSG00000022324.15, intron 4 of 13) protein_coding-intron (ENSMUSG00000022324.15, intron 4 of 18) -10045 ENSMUSG00000094447.2 ENSMUSG00000094447 ENSMUST00000179647 9430069I07Rik protein_coding Interval_79418 chr18 31766472 31766761 + 0 NA intron (ENSMUSG00000041915.9, intron 2 of 5) protein_coding-intron (ENSMUSG00000041915.9, intron 2 of 7) 6790 ENSMUSG00000041915.9 ENSMUSG00000041915 ENSMUST00000234191 Ammecr1l protein_coding Interval_102011 chr3 14948137 14948388 + 0 NA Intergenic Intergenic -22939 ENSMUSG00000098008.1 ENSMUSG00000098008 ENSMUST00000182586 A930001A20Rik lincRNA Interval_130024 chr5 123738673 123738934 + 0 NA TTS (ENSMUSG00000029422.15) protein_coding-TTS (ENSMUSG00000029422.15) 10578 ENSMUSG00000029422.15 ENSMUSG00000029422 ENSMUST00000182542 Rsrc2 protein_coding Interval_152583 chr7 134836839 134837343 + 0 NA intron (ENSMUSG00000058325.6, intron 23 of 26) protein_coding-intron (ENSMUSG00000058325.6, intron 23 of 51) -63579 ENSMUSG00000110167.1 ENSMUSG00000110167 ENSMUST00000210342 Gm45532 TEC Interval_45457 chr13 55256335 55256960 + 0 NA intron (ENSMUSG00000021488.8, intron 3 of 20) protein_coding-intron (ENSMUSG00000021488.8, intron 5 of 22) -2246 ENSMUSG00000114359.1 ENSMUSG00000114359 ENSMUST00000224833 Gm47816 processed_pseudogene Interval_30337 chr11 93693992 93694653 + 0 NA promoter-TSS (ENSMUSG00000080872.1) processed_pseudogene-promoter-TSS (ENSMUSG00000080872.1) -760 ENSMUSG00000080872.1 ENSMUSG00000080872 ENSMUST00000122414 Gm11506 processed_pseudogene Interval_18646 chr10 88775688 88775880 + 0 NA TTS (ENSMUSG00000004356.8) protein_coding-TTS (ENSMUSG00000004356.8) -44683 ENSMUSG00000069540.4 ENSMUSG00000069540 ENSMUST00000092231 Gm4925 transcribed_processed_pseudogene Interval_45300 chr13 54158589 54160018 + 0 NA Intergenic Intergenic 18368 ENSMUSG00000114042.1 ENSMUSG00000114042 ENSMUST00000220543 Gm18473 processed_pseudogene Interval_107296 chr3 105530140 105531059 + 0 NA intron (ENSMUSG00000040896.16, intron 2 of 4) protein_coding-intron (ENSMUSG00000040896.16, intron 1 of 6) 27692 ENSMUSG00000105753.1 ENSMUSG00000105753 ENSMUST00000200070 Gm43847 sense_intronic Interval_18866 chr10 91500578 91500991 + 0 NA Intergenic Intergenic -52404 ENSMUSG00000111051.1 ENSMUSG00000111051 ENSMUST00000213414 Gm47084 processed_pseudogene Interval_74365 chr17 49510955 49511321 + 0 NA intron (ENSMUSG00000040260.8, intron 1 of 2) protein_coding-intron (ENSMUSG00000040260.8, intron 1 of 25) 53168 ENSMUSG00000040260.8 ENSMUSG00000040260 ENSMUST00000226030 Daam2 protein_coding Interval_6214 chr1 102111329 102111549 + 0 NA Intergenic Intergenic -4859 ENSMUSG00000077295.1 ENSMUSG00000077295 ENSMUST00000104107 Gm24122 snoRNA Interval_67055 chr16 42269194 42270073 + 0 NA intron (ENSMUSG00000047261.9, intron 2 of 2) protein_coding-intron (ENSMUSG00000047261.9, intron 2 of 2) 6439 ENSMUSG00000047261.9 ENSMUSG00000047261 ENSMUST00000125187 Gap43 protein_coding Interval_47755 chr13 92354477 92355577 + 0 NA promoter-TSS (ENSMUSG00000014850.15) protein_coding-promoter-TSS (ENSMUSG00000014850.15) -28 ENSMUSG00000014850.15 ENSMUSG00000014850 ENSMUST00000187424 Msh3 protein_coding Interval_117322 chr4 122995369 122997324 + 0 NA exon (ENSMUSG00000028654.13, exon 1 of 2) protein_coding-exon (ENSMUSG00000028654.13, exon 1 of 2) -2993 ENSMUSG00000028654.13 ENSMUSG00000028654 ENSMUST00000147259 Mycl protein_coding Interval_59488 chr15 54211476 54212583 + 0 NA Intergenic Intergenic 66455 ENSMUSG00000063727.3 ENSMUSG00000063727 ENSMUST00000079772 Tnfrsf11b protein_coding Interval_93637 chr2 75326697 75327005 + 0 NA Intergenic Intergenic 21854 ENSMUSG00000102473.1 ENSMUSG00000102473 ENSMUST00000193407 Gm37243 TEC Interval_42522 chr13 14463136 14463438 + 0 NA intron (ENSMUSG00000021301.9, intron 1 of 7) protein_coding-intron (ENSMUSG00000021301.9, intron 1 of 28) 58565 ENSMUSG00000021301.9 ENSMUSG00000021301 ENSMUST00000223283 Hecw1 protein_coding Interval_103000 chr3 34115727 34115945 + 0 NA intron (ENSMUSG00000105265.4, intron 1 of 3) processed_transcript-intron (ENSMUSG00000105265.4, intron 1 of 3) -35656 ENSMUSG00000027679.13 ENSMUSG00000027679 ENSMUST00000117223 Dnajc19 protein_coding Interval_146694 chr7 49484028 49486040 + 0 NA intron (ENSMUSG00000052512.17, intron 10 of 38) protein_coding-intron (ENSMUSG00000052512.17, intron 10 of 37) 15322 ENSMUSG00000102148.1 ENSMUSG00000102148 ENSMUST00000193746 Gm38059 TEC Interval_107118 chr3 103695775 103697244 + 0 NA Intergenic Intergenic 1711 ENSMUSG00000081910.1 ENSMUSG00000081910 ENSMUST00000122153 Gm15986 processed_pseudogene Interval_53822 chr14 62331262 62332596 + 0 NA promoter-TSS (ENSMUSG00000021932.13) protein_coding-promoter-TSS (ENSMUSG00000021932.13) -196 ENSMUSG00000021932.13 ENSMUSG00000021932 ENSMUST00000156608 Rnaseh2b protein_coding Interval_134345 chr6 25878773 25879293 + 0 NA Intergenic Intergenic -52393 ENSMUSG00000106799.1 ENSMUSG00000106799 ENSMUST00000201080 Gm20756 lincRNA Interval_157061 chr8 64882461 64883000 + 0 NA Intergenic Intergenic 29247 ENSMUSG00000109613.1 ENSMUSG00000109613 ENSMUST00000211544 Gm45405 processed_pseudogene Interval_71091 chr17 17865142 17865362 + 0 NA Intergenic Intergenic -10047 ENSMUSG00000003665.7 ENSMUSG00000003665 ENSMUST00000232410 Has1 protein_coding Interval_169250 chr9 95822036 95822231 + 0 NA intron (ENSMUSG00000049493.13, intron 1 of 15) protein_coding-intron (ENSMUSG00000049493.13, intron 1 of 15) 23178 ENSMUSG00000049493.13 ENSMUSG00000049493 ENSMUST00000135816 Pls1 protein_coding Interval_43937 chr13 38157788 38158261 + 0 NA intron (ENSMUSG00000054889.10, intron 1 of 23) protein_coding-intron (ENSMUSG00000054889.10, intron 1 of 23) -6232 ENSMUSG00000103789.1 ENSMUSG00000103789 ENSMUST00000191991 Gm10129 TEC Interval_156424 chr8 48038031 48038288 + 0 NA Intergenic Intergenic -29026 ENSMUSG00000110624.1 ENSMUSG00000110624 ENSMUST00000212073 Gm32052 lincRNA Interval_153851 chr8 9868210 9868390 + 0 NA intron (ENSMUSG00000067627.2, intron 1 of 1) protein_coding-intron (ENSMUSG00000067627.2, intron 1 of 1) 4049 ENSMUSG00000067627.2 ENSMUSG00000067627 ENSMUST00000088080 Gm10217 protein_coding Interval_6522 chr1 114165484 114165764 + 0 NA Intergenic Intergenic -201490 ENSMUSG00000097648.1 ENSMUSG00000097648 ENSMUST00000180837 9330185C12Rik lincRNA Interval_95241 chr2 105111992 105112232 + 0 NA intron (ENSMUSG00000074987.9, intron 1 of 3) antisense-intron (ENSMUSG00000074987.9, intron 1 of 6) 9939 ENSMUSG00000099166.1 ENSMUSG00000099166 ENSMUST00000184714 Gm27715 misc_RNA Interval_92599 chr2 61178390 61178615 + 0 NA Intergenic Intergenic -46290 ENSMUSG00000083197.1 ENSMUSG00000083197 ENSMUST00000120675 Gm13581 processed_pseudogene Interval_143685 chr7 14477719 14477968 + 0 NA intron (ENSMUSG00000094156.2, intron 3 of 6) protein_coding-intron (ENSMUSG00000094156.2, intron 3 of 6) 15128 ENSMUSG00000094156.2 ENSMUSG00000094156 ENSMUST00000211740 Sult2a7 protein_coding Interval_3978 chr1 65311199 65312708 + 0 NA intron (ENSMUSG00000025946.13, intron 1 of 12) protein_coding-intron (ENSMUSG00000025946.13, intron 1 of 12) 29897 ENSMUSG00000025946.13 ENSMUSG00000025946 ENSMUST00000027083 Pth2r protein_coding Interval_106293 chr3 95199982 95200203 + 0 NA exon (ENSMUSG00000038766.16, exon 5 of 5) protein_coding-exon (ENSMUSG00000038766.16, exon 5 of 5) -17365 ENSMUSG00000097167.1 ENSMUSG00000097167 ENSMUST00000181819 Gm16740 antisense Interval_2113 chr1 36511423 36512930 + 0 NA promoter-TSS (ENSMUSG00000001138.13) protein_coding-promoter-TSS (ENSMUSG00000001138.13) 5614 ENSMUSG00000106081.1 ENSMUSG00000106081 ENSMUST00000200651 Gm47280 miRNA Interval_59305 chr15 51038856 51039365 + 0 NA Intergenic Intergenic 141471 ENSMUSG00000115339.1 ENSMUSG00000115339 ENSMUST00000226611 Gm48913 lincRNA Interval_125058 chr5 64165570 64165968 + 0 NA intron (ENSMUSG00000029174.18, intron 2 of 2) protein_coding-intron (ENSMUSG00000029174.18, intron 1 of 21) 9464 ENSMUSG00000029174.18 ENSMUSG00000029174 ENSMUST00000140960 Tbc1d1 protein_coding Interval_57561 chr15 12371143 12371556 + 0 NA intron (ENSMUSG00000022197.16, intron 20 of 23) protein_coding-intron (ENSMUSG00000022197.16, intron 20 of 23) 41031 ENSMUSG00000022197.16 ENSMUSG00000022197 ENSMUST00000189746 Pdzd2 protein_coding Interval_144231 chr7 23388085 23388505 + 0 NA intron (ENSMUSG00000015721.18, intron 1 of 14) protein_coding-intron (ENSMUSG00000015721.18, intron 1 of 15) -18701 ENSMUSG00000095946.1 ENSMUSG00000095946 ENSMUST00000180171 Gm25196 miRNA Interval_29520 chr11 84641995 84643277 + 0 NA Intergenic Intergenic 77796 ENSMUSG00000085044.1 ENSMUSG00000085044 ENSMUST00000150735 1700109G15Rik lincRNA Interval_85123 chr19 23027397 23028174 + 0 NA intron (ENSMUSG00000097930.2, intron 1 of 1) lincRNA-intron (ENSMUSG00000097930.2, intron 1 of 1) -33669 ENSMUSG00000118155.1 ENSMUSG00000118155 ENSMUST00000235686 Gm50136 lincRNA Interval_86734 chr19 43487405 43487676 + 0 NA intron (ENSMUSG00000025189.9, intron 8 of 11) protein_coding-intron (ENSMUSG00000025189.9, intron 7 of 10) 15866 ENSMUSG00000025189.9 ENSMUSG00000025189 ENSMUST00000225191 Cnnm1 protein_coding Interval_141359 chr6 127625105 127625656 + 0 NA intron (ENSMUSG00000061414.8, intron 6 of 18) protein_coding-intron (ENSMUSG00000061414.8, intron 5 of 6) -19060 ENSMUSG00000107253.1 ENSMUSG00000107253 ENSMUST00000202671 Gm43634 lincRNA Interval_165842 chr9 53750224 53751403 + 0 NA Intergenic Intergenic 4744 ENSMUSG00000111084.1 ENSMUSG00000111084 ENSMUST00000213450 Gm48292 processed_pseudogene Interval_40405 chr12 104677024 104677796 + 0 NA Intergenic Intergenic 44642 ENSMUSG00000041415.10 ENSMUSG00000041415 ENSMUST00000222002 Dicer1 protein_coding Interval_69198 chr16 91284747 91285256 + 0 NA intron (ENSMUSG00000085865.2, intron 1 of 2) lincRNA-intron (ENSMUSG00000085865.2, intron 2 of 3) 15229 ENSMUSG00000046160.6 ENSMUSG00000046160 ENSMUST00000056882 Olig1 protein_coding Interval_121963 chr5 12667417 12667660 + 0 NA Intergenic Intergenic 3190 ENSMUSG00000105237.1 ENSMUSG00000105237 ENSMUST00000197223 Gm42580 processed_pseudogene Interval_28187 chr11 73870315 73870570 + 0 NA promoter-TSS (ENSMUSG00000108735.1) unprocessed_pseudogene-promoter-TSS (ENSMUSG00000108735.1) -782 ENSMUSG00000108735.1 ENSMUSG00000108735 ENSMUST00000206645 Gm44638 unprocessed_pseudogene Interval_118805 chr4 133813140 133814633 + 0 NA Intergenic Intergenic -2534 ENSMUSG00000084789.1 ENSMUSG00000084789 ENSMUST00000129875 Gm12974 lincRNA Interval_71545 chr17 24478420 24479352 + 0 NA promoter-TSS (ENSMUSG00000024142.15) protein_coding-promoter-TSS (ENSMUSG00000024142.15) 169 ENSMUSG00000024142.15 ENSMUSG00000024142 ENSMUST00000234032 Mlst8 protein_coding Interval_76355 chr17 79384262 79384866 + 0 NA Intergenic Intergenic 29865 ENSMUSG00000118651.1 ENSMUSG00000118651 ENSMUST00000239444 CT030740.1 antisense Interval_74619 chr17 53871461 53871851 + 0 NA Intergenic Intergenic 3894 ENSMUSG00000105732.1 ENSMUSG00000105732 ENSMUST00000200231 Sult1c2-ps1 unprocessed_pseudogene Interval_43283 chr13 28718090 28719243 + 0 NA intron (ENSMUSG00000085936.7, intron 2 of 5) processed_transcript-intron (ENSMUSG00000085936.7, intron 2 of 5) -7793 ENSMUSG00000099158.1 ENSMUSG00000099158 ENSMUST00000184136 Mir6368 miRNA Interval_171690 chr9 120173815 120175080 + 0 NA exon (ENSMUSG00000032517.16, exon 4 of 4) protein_coding-exon (ENSMUSG00000032517.16, exon 4 of 4) -4591 ENSMUSG00000111219.1 ENSMUSG00000111219 ENSMUST00000216004 Gm38642 processed_transcript Interval_7145 chr1 127217622 127217997 + 0 NA intron (ENSMUSG00000036155.13, intron 1 of 7) protein_coding-intron (ENSMUSG00000036155.13, intron 1 of 17) 12781 ENSMUSG00000036155.13 ENSMUSG00000036155 ENSMUST00000171405 Mgat5 protein_coding Interval_103603 chr3 51121963 51122814 + 0 NA Intergenic Intergenic 18728 ENSMUSG00000103464.1 ENSMUSG00000103464 ENSMUST00000194318 Gm38246 lincRNA Interval_77537 chr17 91087639 91089037 + 0 NA promoter-TSS (ENSMUSG00000071033.1) 3prime_overlapping_ncRNA-promoter-TSS (ENSMUSG00000071033.1) -68 ENSMUSG00000105477.1 ENSMUSG00000105477 ENSMUST00000198489 Gm47307 miRNA Interval_22641 chr11 12442435 12443087 + 0 NA intron (ENSMUSG00000020173.17, intron 1 of 11) protein_coding-intron (ENSMUSG00000020173.17, intron 1 of 14) -30617 ENSMUSG00000020173.17 ENSMUSG00000020173 ENSMUST00000146067 Cobl protein_coding Interval_125236 chr5 65582099 65582370 + 0 NA intron (ENSMUSG00000029203.16, intron 3 of 5) protein_coding-intron (ENSMUSG00000029203.16, intron 4 of 6) 9206 ENSMUSG00000107102.1 ENSMUSG00000107102 ENSMUST00000202274 Gm42726 antisense Interval_107004 chr3 102787250 102787662 + 0 NA intron (ENSMUSG00000027858.13, intron 3 of 3) protein_coding-intron (ENSMUSG00000027858.13, intron 3 of 3) -2667 ENSMUSG00000105855.1 ENSMUSG00000105855 ENSMUST00000197999 Gm42681 antisense Interval_16814 chr10 68320108 68320586 + 0 NA exon (ENSMUSG00000112157.1, exon 2 of 3) lincRNA-exon (ENSMUSG00000112157.1, exon 2 of 3) 795 ENSMUSG00000112157.1 ENSMUSG00000112157 ENSMUST00000218225 4930545H06Rik lincRNA Interval_88449 chr2 5154911 5155321 + 0 NA intron (ENSMUSG00000026676.7, intron 2 of 2) protein_coding-intron (ENSMUSG00000026676.7, intron 2 of 2) -1276 ENSMUSG00000081005.1 ENSMUSG00000081005 ENSMUST00000119322 Gm13198 processed_pseudogene Interval_28877 chr11 78977567 78978725 + 0 NA intron (ENSMUSG00000001123.15, intron 1 of 10) protein_coding-intron (ENSMUSG00000001123.15, intron 1 of 10) -7816 ENSMUSG00000001123.15 ENSMUSG00000001123 ENSMUST00000140073 Lgals9 protein_coding Interval_139344 chr6 99171356 99171697 + 0 NA intron (ENSMUSG00000030067.17, intron 4 of 4) protein_coding-intron (ENSMUSG00000030067.17, intron 2 of 3) -95469 ENSMUSG00000105902.1 ENSMUSG00000105902 ENSMUST00000200105 Gm49348 miRNA Interval_152880 chr7 139429562 139430091 + 0 NA intron (ENSMUSG00000025477.14, intron 1 of 15) protein_coding-intron (ENSMUSG00000025477.14, intron 1 of 15) -86833 ENSMUSG00000025477.14 ENSMUSG00000025477 ENSMUST00000152475 Inpp5a protein_coding Interval_34282 chr11 121956282 121957247 + 0 NA Intergenic Intergenic 13921 ENSMUSG00000082831.1 ENSMUSG00000082831 ENSMUST00000122407 Gm12591 unprocessed_pseudogene Interval_124479 chr5 48643905 48644583 + 0 NA intron (ENSMUSG00000029088.16, intron 1 of 8) protein_coding-intron (ENSMUSG00000029088.16, intron 1 of 8) -17091 ENSMUSG00000105574.1 ENSMUSG00000105574 ENSMUST00000197775 Gm43648 TEC Interval_15190 chr10 43257866 43258120 + 0 NA intron (ENSMUSG00000038240.13, intron 1 of 7) protein_coding-intron (ENSMUSG00000038240.13, intron 1 of 7) 36257 ENSMUSG00000038240.13 ENSMUSG00000038240 ENSMUST00000162008 Pdss2 protein_coding Interval_30794 chr11 96494190 96494896 + 0 NA TTS (ENSMUSG00000057058.16) protein_coding-TTS (ENSMUSG00000057058.16) 10761 ENSMUSG00000057058.16 ENSMUSG00000057058 ENSMUST00000123814 Skap1 protein_coding Interval_112327 chr4 40521857 40522598 + 0 NA intron (ENSMUSG00000086355.1, intron 2 of 6) lincRNA-intron (ENSMUSG00000086355.1, intron 2 of 6) 3321 ENSMUSG00000086355.1 ENSMUSG00000086355 ENSMUST00000146043 4933428C19Rik lincRNA Interval_93691 chr2 75879657 75880167 + 0 NA intron (ENSMUSG00000042410.16, intron 2 of 2) protein_coding-intron (ENSMUSG00000042410.16, intron 11 of 19) -29259 ENSMUSG00000042410.16 ENSMUSG00000042410 ENSMUST00000177204 Agps protein_coding Interval_57899 chr15 25200067 25200726 + 0 NA intron (ENSMUSG00000051237.7, intron 1 of 3) lincRNA-intron (ENSMUSG00000051237.7, intron 1 of 3) 25458 ENSMUSG00000115840.1 ENSMUSG00000115840 ENSMUST00000226135 5830426I08Rik TEC Interval_152713 chr7 136764660 136766072 + 0 NA Intergenic Intergenic -45543 ENSMUSG00000110126.1 ENSMUSG00000110126 ENSMUST00000211473 Gm9347 processed_pseudogene Interval_144956 chr7 29089964 29090382 + 0 NA exon (ENSMUSG00000030592.18, exon 31 of 106) protein_coding-exon (ENSMUSG00000030592.18, exon 31 of 106) -6479 ENSMUSG00000089219.1 ENSMUSG00000089219 ENSMUST00000158594 Mir1963 miRNA Interval_103374 chr3 40979289 40979514 + 0 NA Intergenic Intergenic -13292 ENSMUSG00000064927.1 ENSMUSG00000064927 ENSMUST00000082993 Gm22043 snRNA Interval_69734 chr16 95935483 95935884 + 0 NA Intergenic Intergenic 35285 ENSMUSG00000085903.1 ENSMUSG00000085903 ENSMUST00000144984 Gm15340 lincRNA Interval_8903 chr1 151960584 151961055 + 0 NA intron (ENSMUSG00000032666.16, intron 3 of 6) protein_coding-intron (ENSMUSG00000032666.16, intron 3 of 5) 85400 ENSMUSG00000100685.1 ENSMUSG00000100685 ENSMUST00000187716 Gm28610 antisense Interval_23836 chr11 26904823 26905172 + 0 NA Intergenic Intergenic -48087 ENSMUSG00000080987.1 ENSMUSG00000080987 ENSMUST00000117382 Gm12073 processed_pseudogene Interval_135513 chr6 39787863 39788091 + 0 NA Intergenic Intergenic 18065 ENSMUSG00000029918.9 ENSMUSG00000029918 ENSMUST00000139992 Mrps33 protein_coding Interval_131568 chr5 138170839 138172661 + 0 NA promoter-TSS (ENSMUSG00000019518.11) protein_coding-promoter-TSS (ENSMUSG00000019518.11) 65 ENSMUSG00000029730.16 ENSMUSG00000029730 ENSMUST00000147920 Mcm7 protein_coding Interval_133447 chr6 5138071 5140060 + 0 NA intron (ENSMUSG00000032827.15, intron 12 of 17) protein_coding-intron (ENSMUSG00000032827.15, intron 12 of 15) 54719 ENSMUSG00000002588.13 ENSMUSG00000002588 ENSMUST00000176933 Pon1 protein_coding Interval_163473 chr9 21605812 21606342 + 0 NA Intergenic Intergenic 2250 ENSMUSG00000111812.1 ENSMUSG00000111812 ENSMUST00000217049 Gm7904 processed_pseudogene Interval_57514 chr15 12016180 12016514 + 0 NA Intergenic Intergenic 15580 ENSMUSG00000107344.1 ENSMUSG00000107344 ENSMUST00000201323 Gm2559 processed_pseudogene Interval_82739 chr18 76319430 76319744 + 0 NA Intergenic Intergenic -2237 ENSMUSG00000117816.1 ENSMUSG00000117816 ENSMUST00000235901 Gm50360 processed_pseudogene Interval_12834 chr10 6011415 6011717 + 0 NA Intergenic Intergenic -89180 ENSMUSG00000019775.17 ENSMUSG00000019775 ENSMUST00000019909 Rgs17 protein_coding Interval_145596 chr7 35790123 35791544 + 0 NA TTS (ENSMUSG00000044452.10) protein_coding-TTS (ENSMUSG00000044452.10) -11665 ENSMUSG00000044452.10 ENSMUSG00000044452 ENSMUST00000206003 Zfp507 protein_coding Interval_40094 chr12 101122432 101123340 + 0 NA Intergenic Intergenic -5775 ENSMUSG00000113817.1 ENSMUSG00000113817 ENSMUST00000223122 Gm21056 transcribed_unprocessed_pseudogene Interval_27512 chr11 68334460 68335739 + 0 NA intron (ENSMUSG00000020902.12, intron 3 of 7) protein_coding-intron (ENSMUSG00000020902.12, intron 2 of 6) 51913 ENSMUSG00000020902.12 ENSMUSG00000020902 ENSMUST00000135141 Ntn1 protein_coding Interval_86015 chr19 34932368 34932689 + 0 NA TTS (ENSMUSG00000024795.11) protein_coding-TTS (ENSMUSG00000024795.11) -32868 ENSMUSG00000089151.1 ENSMUSG00000089151 ENSMUST00000158526 Mir1950 miRNA Interval_16440 chr10 62877735 62878955 + 0 NA exon (ENSMUSG00000047146.17, exon 1 of 11) protein_coding-exon (ENSMUSG00000047146.17, exon 1 of 11) 9167 ENSMUSG00000047146.17 ENSMUSG00000047146 ENSMUST00000218782 Tet1 protein_coding Interval_66327 chr16 33167493 33167944 + 0 NA Intergenic Intergenic -17353 ENSMUSG00000022807.9 ENSMUSG00000022807 ENSMUST00000231617 Osbpl11 protein_coding Interval_69601 chr16 94551477 94552587 + 0 NA Intergenic Intergenic -18875 ENSMUSG00000022897.15 ENSMUSG00000022897 ENSMUST00000134383 Dyrk1a protein_coding Interval_147393 chr7 66416947 66417155 + 0 NA intron (ENSMUSG00000015134.15, intron 1 of 6) protein_coding-intron (ENSMUSG00000015134.15, intron 3 of 12) 2184 ENSMUSG00000015134.15 ENSMUSG00000015134 ENSMUST00000174215 Aldh1a3 protein_coding Interval_170559 chr9 108685412 108686266 + 0 NA Intergenic Intergenic -6618 ENSMUSG00000032601.13 ENSMUSG00000032601 ENSMUST00000195263 Prkar2a protein_coding Interval_156943 chr8 62051319 62051927 + 0 NA Intergenic Intergenic 71527 ENSMUSG00000031635.14 ENSMUSG00000031635 ENSMUST00000210799 Anxa10 protein_coding Interval_22524 chr11 11474231 11474502 + 0 NA intron (ENSMUSG00000020191.11, intron 1 of 8) protein_coding-intron (ENSMUSG00000020191.11, intron 1 of 8) -11958 ENSMUSG00000020193.3 ENSMUSG00000020193 ENSMUST00000020413 Zpbp protein_coding Interval_35622 chr12 25896280 25897407 + 0 NA Intergenic Intergenic 25690 ENSMUSG00000113827.1 ENSMUSG00000113827 ENSMUST00000221959 Gm47733 lincRNA Interval_156025 chr8 42714672 42715359 + 0 NA Intergenic Intergenic -27792 ENSMUSG00000088312.1 ENSMUSG00000088312 ENSMUST00000157687 Gm26181 snRNA Interval_64996 chr16 17761991 17762218 + 0 NA promoter-TSS (ENSMUSG00000022750.18) protein_coding-promoter-TSS (ENSMUSG00000022750.18) 2427 ENSMUSG00000022750.18 ENSMUSG00000022750 ENSMUST00000140306 Klhl22 protein_coding Interval_149199 chr7 96212578 96213587 + 0 NA intron (ENSMUSG00000048078.16, intron 1 of 32) protein_coding-intron (ENSMUSG00000048078.16, intron 1 of 32) -9546 ENSMUSG00000108528.1 ENSMUSG00000108528 ENSMUST00000205708 Gm8319 processed_pseudogene Interval_77307 chr17 87948735 87950389 + 0 NA promoter-TSS (ENSMUSG00000117455.1) processed_pseudogene-promoter-TSS (ENSMUSG00000117455.1) -365 ENSMUSG00000117455.1 ENSMUSG00000117455 ENSMUST00000234870 Gm50040 processed_pseudogene Interval_97737 chr2 143652589 143652851 + 0 NA intron (ENSMUSG00000027419.9, intron 2 of 11) protein_coding-intron (ENSMUSG00000027419.9, intron 2 of 11) 106449 ENSMUSG00000027419.9 ENSMUSG00000027419 ENSMUST00000124751 Pcsk2 protein_coding Interval_67611 chr16 52450355 52450898 + 0 NA intron (ENSMUSG00000022636.13, intron 1 of 14) protein_coding-intron (ENSMUSG00000022636.13, intron 1 of 15) 1839 ENSMUSG00000022636.13 ENSMUSG00000022636 ENSMUST00000168071 Alcam protein_coding Interval_126535 chr5 89882004 89884241 + 0 NA promoter-TSS (ENSMUSG00000043635.12) protein_coding-promoter-TSS (ENSMUSG00000043635.12) 212 ENSMUSG00000043635.12 ENSMUSG00000043635 ENSMUST00000196507 Adamts3 protein_coding Interval_117049 chr4 119223432 119224191 + 0 NA exon (ENSMUSG00000078584.9, exon 5 of 5) protein_coding-exon (ENSMUSG00000078584.9, exon 5 of 5) 637 ENSMUSG00000085626.1 ENSMUSG00000085626 ENSMUST00000144407 Gm12898 processed_transcript Interval_9026 chr1 153152508 153154601 + 0 NA intron (ENSMUSG00000026479.13, intron 4 of 22) protein_coding-intron (ENSMUSG00000026479.13, intron 5 of 23) -26320 ENSMUSG00000026479.13 ENSMUSG00000026479 ENSMUST00000188831 Lamc2 protein_coding Interval_173741 chrX 103355954 103357214 + 0 NA exon (ENSMUSG00000031327.10, exon 1 of 6) protein_coding-exon (ENSMUSG00000031327.10, exon 1 of 6) 108 ENSMUSG00000031327.10 ENSMUSG00000031327 ENSMUST00000116547 Chic1 protein_coding Interval_136455 chr6 54606416 54606939 + 0 NA intron (ENSMUSG00000005225.15, intron 1 of 13) protein_coding-intron (ENSMUSG00000005225.15, intron 1 of 13) 11566 ENSMUSG00000005225.15 ENSMUSG00000005225 ENSMUST00000101385 Plekha8 protein_coding Interval_51185 chr14 24529974 24530815 + 0 NA Intergenic Intergenic 39676 ENSMUSG00000025290.17 ENSMUSG00000025290 ENSMUST00000224699 Rps24 protein_coding Interval_21214 chr10 127255808 127256326 + 0 NA intron (ENSMUSG00000074657.5, intron 1 of 4) protein_coding-intron (ENSMUSG00000074657.5, intron 1 of 28) 7028 ENSMUSG00000074657.5 ENSMUSG00000074657 ENSMUST00000218298 Kif5a protein_coding Interval_48181 chr13 97045279 97045843 + 0 NA Intergenic Intergenic -11212 ENSMUSG00000052075.7 ENSMUSG00000052075 ENSMUST00000221277 1700029F12Rik protein_coding Interval_105150 chr3 82738045 82738241 + 0 NA Intergenic Intergenic -16381 ENSMUSG00000104898.1 ENSMUSG00000104898 ENSMUST00000196689 Gm30043 lincRNA Interval_147609 chr7 69583675 69584357 + 0 NA Intergenic Intergenic 4308 ENSMUSG00000109412.1 ENSMUSG00000109412 ENSMUST00000208889 Gm44535 TEC Interval_151025 chr7 117899968 117900158 + 0 NA Intergenic Intergenic 123269 ENSMUSG00000088116.1 ENSMUSG00000088116 ENSMUST00000157491 Gm24063 miRNA Interval_1194 chr1 16824079 16825273 + 0 NA Intergenic Intergenic -54538 ENSMUSG00000091020.3 ENSMUSG00000091020 ENSMUST00000071842 Gm5828 processed_pseudogene Interval_168991 chr9 90081654 90082111 + 0 NA Intergenic Intergenic 27328 ENSMUSG00000032359.14 ENSMUSG00000032359 ENSMUST00000151219 Ctsh protein_coding Interval_153814 chr8 8943066 8943404 + 0 NA Intergenic Intergenic -10536 ENSMUSG00000109346.1 ENSMUSG00000109346 ENSMUST00000209045 Gm44515 lincRNA Interval_137930 chr6 83455236 83457750 + 0 NA promoter-TSS (ENSMUSG00000034832.15) protein_coding-promoter-TSS (ENSMUSG00000034832.15) 14683 ENSMUSG00000051844.13 ENSMUSG00000051844 ENSMUST00000167886 B230319C09Rik processed_transcript Interval_54380 chr14 68079009 68079266 + 0 NA Intergenic Intergenic -4726 ENSMUSG00000022055.7 ENSMUSG00000022055 ENSMUST00000022639 Nefl protein_coding Interval_3146 chr1 53988841 53989573 + 0 NA intron (ENSMUSG00000042807.15, intron 2 of 3) protein_coding-intron (ENSMUSG00000042807.15, intron 2 of 28) -102266 ENSMUSG00000087949.1 ENSMUSG00000087949 ENSMUST00000157324 Gm24251 snRNA Interval_148852 chr7 89306693 89309134 + 0 NA intron (ENSMUSG00000039428.11, intron 1 of 8) protein_coding-intron (ENSMUSG00000039428.11, intron 1 of 14) -12049 ENSMUSG00000096631.1 ENSMUSG00000096631 ENSMUST00000179283 Gm22171 miRNA Interval_169010 chr9 90184867 90185199 + 0 NA intron (ENSMUSG00000032363.15, intron 8 of 23) protein_coding-intron (ENSMUSG00000032363.15, intron 8 of 23) 21955 ENSMUSG00000032363.15 ENSMUSG00000032363 ENSMUST00000124441 Adamts7 protein_coding Interval_109282 chr3 138620023 138620986 + 0 NA Intergenic Intergenic -15520 ENSMUSG00000105396.1 ENSMUSG00000105396 ENSMUST00000195927 Gm6057 processed_pseudogene Interval_60239 chr15 68934999 68935623 + 0 NA intron (ENSMUSG00000022332.8, intron 1 of 4) protein_coding-intron (ENSMUSG00000022332.8, intron 1 of 8) 6614 ENSMUSG00000022332.8 ENSMUSG00000022332 ENSMUST00000230073 Khdrbs3 protein_coding Interval_142254 chr6 140027708 140027901 + 0 NA intron (ENSMUSG00000030230.15, intron 4 of 5) protein_coding-intron (ENSMUSG00000030230.15, intron 4 of 13) 5728 ENSMUSG00000108251.1 ENSMUSG00000108251 ENSMUST00000204787 Gm44112 processed_pseudogene Interval_16492 chr10 63176831 63177980 + 0 NA intron (ENSMUSG00000020067.8, intron 2 of 19) protein_coding-intron (ENSMUSG00000020067.8, intron 2 of 19) -54721 ENSMUSG00000020067.8 ENSMUSG00000020067 ENSMUST00000218978 Mypn protein_coding Interval_154902 chr8 24947877 24949277 + 0 NA intron (ENSMUSG00000037437.18, intron 1 of 8) protein_coding-intron (ENSMUSG00000037437.18, intron 1 of 19) 204 ENSMUSG00000037437.18 ENSMUSG00000037437 ENSMUST00000133088 Adam32 protein_coding Interval_25861 chr11 52223101 52225040 + 0 NA Intergenic Intergenic -7967 ENSMUSG00000036309.14 ENSMUSG00000036309 ENSMUST00000116595 Skp1a protein_coding Interval_32588 chr11 108930745 108930986 + 0 NA intron (ENSMUSG00000000142.15, intron 1 of 8) protein_coding-intron (ENSMUSG00000000142.15, intron 2 of 10) 9529 ENSMUSG00000000142.15 ENSMUSG00000000142 ENSMUST00000139682 Axin2 protein_coding Interval_15692 chr10 53605665 53607623 + 0 NA TTS (ENSMUSG00000019857.7) protein_coding-TTS (ENSMUSG00000019857.7) -7725 ENSMUSG00000112332.1 ENSMUSG00000112332 ENSMUST00000219458 4930466K18Rik TEC Interval_76802 chr17 84177581 84177813 + 0 NA Intergenic Intergenic -8059 ENSMUSG00000117393.1 ENSMUSG00000117393 ENSMUST00000234321 Gm36279 antisense Interval_50112 chr14 8065892 8066139 + 0 NA Intergenic Intergenic -24063 ENSMUSG00000023156.4 ENSMUSG00000023156 ENSMUST00000180369 Rpp14 protein_coding Interval_121767 chr5 7622163 7623030 + 0 NA Intergenic Intergenic -222234 ENSMUSG00000098077.1 ENSMUSG00000098077 ENSMUST00000182928 Gm4960 processed_pseudogene Interval_90388 chr2 30130802 30131802 + 0 NA Intergenic Intergenic -2470 ENSMUSG00000039678.12 ENSMUSG00000039678 ENSMUST00000132324 Tbc1d13 protein_coding Interval_85232 chr19 24057102 24057652 + 0 NA Intergenic Intergenic -7416 ENSMUSG00000096796.1 ENSMUSG00000096796 ENSMUST00000178667 1700021P04Rik lincRNA Interval_32285 chr11 106689163 106689364 + 0 NA intron (ENSMUSG00000020717.19, intron 5 of 14) protein_coding-intron (ENSMUSG00000020717.19, intron 7 of 15) -25937 ENSMUSG00000020717.19 ENSMUSG00000020717 ENSMUST00000124958 Pecam1 protein_coding Interval_89425 chr2 20615319 20616460 + 0 NA intron (ENSMUSG00000036617.17, intron 1 of 2) protein_coding-intron (ENSMUSG00000036617.17, intron 3 of 18) 56085 ENSMUSG00000098575.1 ENSMUSG00000098575 ENSMUST00000183963 Gm27446 misc_RNA Interval_82723 chr18 76200154 76201475 + 0 NA Intergenic Intergenic 23369 ENSMUSG00000118294.1 ENSMUSG00000118294 ENSMUST00000237277 Gm9028 processed_pseudogene Interval_132595 chr5 146609607 146610379 + 0 NA Intergenic Intergenic -9891 ENSMUSG00000105907.1 ENSMUSG00000105907 ENSMUST00000200363 Gm34333 lincRNA Interval_101866 chr3 10273319 10273647 + 0 NA intron (ENSMUSG00000027530.15, intron 1 of 5) protein_coding-intron (ENSMUSG00000027530.15, intron 1 of 5) -19258 ENSMUSG00000027530.15 ENSMUSG00000027530 ENSMUST00000119761 Fabp12 protein_coding Interval_74602 chr17 53638542 53639275 + 0 NA TTS (ENSMUSG00000000708.14) protein_coding-TTS (ENSMUSG00000000708.14) -20403 ENSMUSG00000000708.14 ENSMUSG00000000708 ENSMUST00000171072 Kat2b protein_coding Interval_84851 chr19 17470854 17471787 + 0 NA intron (ENSMUSG00000024713.16, intron 27 of 37) protein_coding-intron (ENSMUSG00000024713.16, intron 27 of 37) 73883 ENSMUSG00000024712.9 ENSMUSG00000024712 ENSMUST00000146171 Rfk protein_coding Interval_169699 chr9 100482110 100482374 + 0 NA intron (ENSMUSG00000044244.18, intron 1 of 4) protein_coding-intron (ENSMUSG00000044244.18, intron 1 of 6) -11633 ENSMUSG00000044244.18 ENSMUSG00000044244 ENSMUST00000122880 Il20rb protein_coding Interval_144810 chr7 28380867 28382305 + 0 NA intron (ENSMUSG00000109455.1, intron 1 of 1) antisense-intron (ENSMUSG00000109455.1, intron 1 of 1) -2331 ENSMUSG00000044786.6 ENSMUSG00000044786 ENSMUST00000209061 Zfp36 protein_coding Interval_9723 chr1 161281274 161281487 + 0 NA Intergenic Intergenic 17634 ENSMUSG00000104163.1 ENSMUSG00000104163 ENSMUST00000194329 Gm19057 processed_pseudogene Interval_11378 chr1 181379370 181380122 + 0 NA intron (ENSMUSG00000026514.14, intron 1 of 5) protein_coding-intron (ENSMUSG00000026514.14, intron 1 of 5) -1432 ENSMUSG00000102276.1 ENSMUSG00000102276 ENSMUST00000192780 2900069G24Rik TEC Interval_12683 chr10 4311297 4312126 + 0 NA intron (ENSMUSG00000038587.10, intron 1 of 3) protein_coding-intron (ENSMUSG00000038587.10, intron 1 of 3) -22834 ENSMUSG00000038587.10 ENSMUSG00000038587 ENSMUST00000215696 Akap12 protein_coding Interval_91001 chr2 34097869 34098253 + 0 NA intron (ENSMUSG00000103413.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000087461.2, intron 1 of 3) 9674 ENSMUSG00000087461.2 ENSMUSG00000087461 ENSMUST00000149707 C230014O12Rik lincRNA Interval_104694 chr3 69502025 69502776 + 0 NA intron (ENSMUSG00000027784.10, intron 2 of 3) protein_coding-intron (ENSMUSG00000027784.10, intron 2 of 3) 5187 ENSMUSG00000027784.10 ENSMUSG00000027784 ENSMUST00000128637 Ppm1l protein_coding Interval_139450 chr6 100264222 100265331 + 0 NA intron (ENSMUSG00000072872.3, intron 1 of 1) protein_coding-intron (ENSMUSG00000072872.3, intron 2 of 4) -5549 ENSMUSG00000107461.1 ENSMUSG00000107461 ENSMUST00000204906 Gm44045 TEC Interval_48927 chr13 104924579 104924928 + 0 NA Intergenic Intergenic 5973 ENSMUSG00000114326.1 ENSMUSG00000114326 ENSMUST00000171334 Gm4938 processed_pseudogene Interval_18777 chr10 90566639 90566843 + 0 NA intron (ENSMUSG00000058589.14, intron 14 of 25) protein_coding-intron (ENSMUSG00000058589.14, intron 14 of 17) 115831 ENSMUSG00000088221.1 ENSMUSG00000088221 ENSMUST00000157596 Gm22602 snRNA Interval_155845 chr8 40151003 40151647 + 0 NA Intergenic Intergenic 134611 ENSMUSG00000109815.1 ENSMUSG00000109815 ENSMUST00000209880 Gm7082 processed_pseudogene Interval_16318 chr10 62172924 62173319 + 0 NA Intergenic Intergenic 21106 ENSMUSG00000099185.1 ENSMUSG00000099185 ENSMUST00000184761 Mir7662 miRNA Interval_89668 chr2 24397012 24397572 + 0 NA TTS (ENSMUSG00000026979.16) protein_coding-TTS (ENSMUSG00000026979.16) 10675 ENSMUSG00000026979.16 ENSMUSG00000026979 ENSMUST00000132924 Psd4 protein_coding Interval_169784 chr9 101261225 101262463 + 0 NA Intergenic Intergenic 19929 ENSMUSG00000101001.1 ENSMUSG00000101001 ENSMUST00000187086 Gm3121 processed_pseudogene Interval_30207 chr11 90616591 90616940 + 0 NA intron (ENSMUSG00000020546.14, intron 4 of 17) protein_coding-intron (ENSMUSG00000020546.14, intron 4 of 15) 21319 ENSMUSG00000020546.14 ENSMUSG00000020546 ENSMUST00000132078 Stxbp4 protein_coding Interval_137069 chr6 67138255 67138936 + 0 NA intron (ENSMUSG00000097603.3, intron 4 of 5) processed_transcript-intron (ENSMUSG00000097603.3, intron 4 of 5) 22918 ENSMUSG00000097603.3 ENSMUSG00000097603 ENSMUST00000054470 A430010J10Rik processed_transcript Interval_172596 chrX 37211141 37211698 + 0 NA promoter-TSS (ENSMUSG00000073243.2) protein_coding-promoter-TSS (ENSMUSG00000073243.2) -378 ENSMUSG00000073243.2 ENSMUSG00000073243 ENSMUST00000101636 Gm9 protein_coding Interval_90246 chr2 29295130 29296526 + 0 NA Intergenic Intergenic -42835 ENSMUSG00000079499.9 ENSMUSG00000079499 ENSMUST00000028141 6530402F18Rik processed_transcript Interval_27565 chr11 68752626 68753615 + 0 NA intron (ENSMUSG00000020900.15, intron 6 of 12) protein_coding-intron (ENSMUSG00000020900.15, intron 7 of 42) 60966 ENSMUSG00000020900.15 ENSMUSG00000020900 ENSMUST00000139059 Myh10 protein_coding Interval_115415 chr4 98767343 98768022 + 0 NA intron (ENSMUSG00000035407.8, intron 7 of 9) protein_coding-intron (ENSMUSG00000035407.8, intron 7 of 9) 3793 ENSMUSG00000035407.8 ENSMUSG00000035407 ENSMUST00000137270 Kank4 protein_coding Interval_33856 chr11 119035552 119036030 + 0 NA TTS (ENSMUSG00000025578.9) protein_coding-TTS (ENSMUSG00000025578.9) 5120 ENSMUSG00000025578.9 ENSMUSG00000025578 ENSMUST00000143831 Cbx8 protein_coding Interval_50867 chr14 20319187 20319814 + 0 NA TTS (ENSMUSG00000021810.3) protein_coding-TTS (ENSMUSG00000021810.3) 8071 ENSMUSG00000021809.10 ENSMUSG00000021809 ENSMUST00000225728 Nudt13 protein_coding Interval_144379 chr7 24801880 24802096 + 0 NA Intergenic Intergenic -16807 ENSMUSG00000011350.15 ENSMUSG00000011350 ENSMUST00000155799 Gm5893 processed_transcript Interval_57113 chr15 6621432 6623383 + 0 NA intron (ENSMUSG00000089647.2, intron 3 of 6) protein_coding-intron (ENSMUSG00000022148.16, intron 2 of 17) -15525 ENSMUSG00000089647.2 ENSMUSG00000089647 ENSMUST00000228703 Gm2245 antisense Interval_11514 chr1 182362878 182365014 + 0 NA Intergenic Intergenic -22375 ENSMUSG00000047539.9 ENSMUSG00000047539 ENSMUST00000194213 Fbxo28 protein_coding Interval_35512 chr12 24096146 24097807 + 0 NA exon (ENSMUSG00000073158.4, exon 1 of 4) protein_coding-exon (ENSMUSG00000073158.4, exon 1 of 4) 270 ENSMUSG00000073158.4 ENSMUSG00000073158 ENSMUST00000101538 9030624G23Rik protein_coding Interval_163775 chr9 25569244 25569505 + 0 NA TTS (ENSMUSG00000077697.1) snoRNA-TTS (ENSMUSG00000077697.1) 431 ENSMUSG00000077697.1 ENSMUSG00000077697 ENSMUST00000104509 Gm25346 snoRNA Interval_50844 chr14 20168938 20169473 + 0 NA intron (ENSMUSG00000023243.9, intron 1 of 4) protein_coding-intron (ENSMUSG00000023243.9, intron 1 of 4) -23911 ENSMUSG00000023243.9 ENSMUSG00000023243 ENSMUST00000225552 Kcnk5 protein_coding Interval_15083 chr10 42456803 42458055 + 0 NA intron (ENSMUSG00000038302.14, intron 1 of 13) protein_coding-intron (ENSMUSG00000038302.14, intron 1 of 12) 20851 ENSMUSG00000038302.14 ENSMUSG00000038302 ENSMUST00000149832 Afg1l protein_coding Interval_161419 chr8 120356959 120357787 + 0 NA intron (ENSMUSG00000031822.20, intron 2 of 2) protein_coding-intron (ENSMUSG00000092329.1, intron 1 of 15) 86176 ENSMUSG00000080549.2 ENSMUSG00000080549 ENSMUST00000116899 Gm22715 miRNA Interval_136211 chr6 52070673 52071035 + 0 NA Intergenic Intergenic -32140 ENSMUSG00000085412.7 ENSMUSG00000085412 ENSMUST00000155758 Halr1 lincRNA Interval_148462 chr7 81464047 81464696 + 0 NA intron (ENSMUSG00000062444.15, intron 19 of 24) protein_coding-intron (ENSMUSG00000062444.15, intron 20 of 25) 8476 ENSMUSG00000109401.1 ENSMUSG00000109401 ENSMUST00000207156 Cpeb1os1 TEC Interval_75243 chr17 65251989 65252428 + 0 NA Intergenic Intergenic -83005 ENSMUSG00000117336.1 ENSMUSG00000117336 ENSMUST00000233948 Gm49865 processed_pseudogene Interval_15969 chr10 59752852 59754416 + 0 NA intron (ENSMUSG00000020111.15, intron 5 of 12) protein_coding-intron (ENSMUSG00000020111.15, intron 5 of 13) 44844 ENSMUSG00000090350.1 ENSMUSG00000090350 ENSMUST00000164702 Gm17148 processed_pseudogene Interval_51961 chr14 34276855 34277067 + 0 NA intron (ENSMUSG00000041471.9, intron 1 of 1) protein_coding-intron (ENSMUSG00000041471.9, intron 2 of 10) -3882 ENSMUSG00000115214.1 ENSMUSG00000115214 ENSMUST00000227194 Gm49202 processed_pseudogene Interval_124789 chr5 54050991 54051220 + 0 NA intron (ENSMUSG00000039156.19, intron 1 of 12) protein_coding-intron (ENSMUSG00000039156.19, intron 1 of 11) 43975 ENSMUSG00000107105.1 ENSMUSG00000107105 ENSMUST00000201566 Gm15820 processed_pseudogene Interval_13061 chr10 10948237 10948526 + 0 NA intron (ENSMUSG00000019828.13, intron 2 of 9) protein_coding-intron (ENSMUSG00000019828.13, intron 2 of 8) -87535 ENSMUSG00000111921.1 ENSMUSG00000111921 ENSMUST00000218933 Gm48406 processed_pseudogene Interval_107578 chr3 108606776 108606969 + 0 NA intron (ENSMUSG00000040389.15, intron 1 of 3) protein_coding-intron (ENSMUSG00000040389.15, intron 1 of 14) -4057 ENSMUSG00000081499.1 ENSMUSG00000081499 ENSMUST00000122082 Gm12517 processed_pseudogene Interval_127061 chr5 100026591 100027301 + 0 NA Intergenic Intergenic 11923 ENSMUSG00000029328.15 ENSMUSG00000029328 ENSMUST00000151323 Hnrnpdl protein_coding Interval_144446 chr7 25205835 25206712 + 0 NA intron (ENSMUSG00000054499.9, intron 4 of 4) protein_coding-intron (ENSMUSG00000054499.9, intron 4 of 4) 11452 ENSMUSG00000098325.1 ENSMUSG00000098325 ENSMUST00000184632 Mir7048 miRNA Interval_137239 chr6 70620129 70620752 + 0 NA Intergenic Intergenic 13003 ENSMUSG00000076598.3 ENSMUSG00000076598 ENSMUST00000103399 Igkv3-7 IG_V_gene Interval_84615 chr19 14457888 14458696 + 0 NA intron (ENSMUSG00000024642.17, intron 14 of 19) protein_coding-intron (ENSMUSG00000024642.17, intron 14 of 19) 137247 ENSMUSG00000024642.17 ENSMUSG00000024642 ENSMUST00000235975 Tle4 protein_coding Interval_13431 chr10 18190817 18191223 + 0 NA intron (ENSMUSG00000071392.6, intron 2 of 20) protein_coding-intron (ENSMUSG00000071392.6, intron 3 of 20) 25315 ENSMUSG00000059554.12 ENSMUSG00000059554 ENSMUST00000052648 Ccdc28a protein_coding Interval_161536 chr8 121065031 121065221 + 0 NA intron (ENSMUSG00000097336.8, intron 4 of 6) protein_coding-intron (ENSMUSG00000092329.1, intron 1 of 15) 17984 ENSMUSG00000097336.8 ENSMUSG00000097336 ENSMUST00000182264 Fendrr processed_transcript Interval_134272 chr6 24366419 24367061 + 0 NA Intergenic Intergenic 148327 ENSMUSG00000046192.4 ENSMUSG00000046192 ENSMUST00000052277 Iqub protein_coding Interval_136451 chr6 54592990 54593550 + 0 NA promoter-TSS (ENSMUSG00000038074.16) protein_coding-promoter-TSS (ENSMUSG00000038074.16) -122 ENSMUSG00000038074.16 ENSMUSG00000038074 ENSMUST00000154907 Fkbp14 protein_coding Interval_50196 chr14 9330940 9332105 + 0 NA Intergenic Intergenic -69102 ENSMUSG00000114615.1 ENSMUSG00000114615 ENSMUST00000224264 Gm48370 lincRNA Interval_1451 chr1 23649887 23650224 + 0 NA Intergenic Intergenic 75468 ENSMUSG00000099503.1 ENSMUSG00000099503 ENSMUST00000191140 Gm28822 lincRNA Interval_156066 chr8 43320686 43321373 + 0 NA Intergenic Intergenic -14093 ENSMUSG00000051176.6 ENSMUSG00000051176 ENSMUST00000082120 Zfp42 protein_coding Interval_1583 chr1 28175482 28175756 + 0 NA Intergenic Intergenic 185709 ENSMUSG00000101372.1 ENSMUSG00000101372 ENSMUST00000189614 Gm19028 processed_pseudogene Interval_63286 chr15 100107397 100107894 + 0 NA intron (ENSMUSG00000116311.1, intron 1 of 1) protein_coding-intron (ENSMUSG00000023026.16, intron 1 of 37) 516 ENSMUSG00000116311.1 ENSMUSG00000116311 ENSMUST00000229204 4930478M13Rik antisense Interval_4162 chr1 71053857 71054128 + 0 NA intron (ENSMUSG00000026196.7, intron 6 of 10) protein_coding-intron (ENSMUSG00000026196.7, intron 6 of 10) -13962 ENSMUSG00000089965.1 ENSMUSG00000089965 ENSMUST00000159588 Gm16236 processed_pseudogene Interval_163723 chr9 24910541 24911420 + 0 NA Intergenic Intergenic -41993 ENSMUSG00000110872.1 ENSMUSG00000110872 ENSMUST00000217324 Gm48255 processed_pseudogene Interval_146333 chr7 45380701 45382307 + 0 NA promoter-TSS (ENSMUSG00000063511.11) protein_coding-promoter-TSS (ENSMUSG00000063511.11) -7027 ENSMUSG00000084519.1 ENSMUSG00000084519 ENSMUST00000122570 Gm22478 snoRNA Interval_26223 chr11 55234794 55235036 + 0 NA exon (ENSMUSG00000020261.15, exon 11 of 11) protein_coding-exon (ENSMUSG00000020261.15, exon 11 of 11) 30553 ENSMUSG00000020261.15 ENSMUSG00000020261 ENSMUST00000108867 Slc36a1 protein_coding Interval_153883 chr8 10633331 10633618 + 0 NA exon (ENSMUSG00000039057.11, exon 35 of 35) protein_coding-exon (ENSMUSG00000039057.11, exon 35 of 35) 43439 ENSMUSG00000109258.1 ENSMUSG00000109258 ENSMUST00000208649 5330413D20Rik lincRNA Interval_123624 chr5 33912564 33914617 + 0 NA intron (ENSMUSG00000029111.7, intron 3 of 10) protein_coding-intron (ENSMUSG00000029111.7, intron 3 of 10) -14619 ENSMUSG00000098830.1 ENSMUSG00000098830 ENSMUST00000183676 Mir7024 miRNA Interval_85887 chr19 32755698 32758330 + 0 NA promoter-TSS (ENSMUSG00000013663.7) protein_coding-promoter-TSS (ENSMUSG00000013663.7) -54211 ENSMUSG00000013663.7 ENSMUSG00000013663 ENSMUST00000154806 Pten protein_coding Interval_16935 chr10 70006448 70007192 + 0 NA exon (ENSMUSG00000069601.14, exon 20 of 25) protein_coding-exon (ENSMUSG00000069601.14, exon 20 of 25) -168191 ENSMUSG00000048701.13 ENSMUSG00000048701 ENSMUST00000135607 Ccdc6 protein_coding Interval_10584 chr1 172019015 172019443 + 0 NA intron (ENSMUSG00000026556.15, intron 1 of 8) protein_coding-intron (ENSMUSG00000026556.15, intron 1 of 7) 7482 ENSMUSG00000026556.15 ENSMUSG00000026556 ENSMUST00000138714 Vangl2 protein_coding Interval_131494 chr5 137553125 137554222 + 0 NA exon (ENSMUSG00000029712.14, exon 1 of 3) protein_coding-exon (ENSMUSG00000029712.14, exon 1 of 3) 135 ENSMUSG00000029712.14 ENSMUSG00000029712 ENSMUST00000031725 Actl6b protein_coding Interval_20473 chr10 117805882 117807053 + 0 NA Intergenic Intergenic -7702 ENSMUSG00000112525.1 ENSMUSG00000112525 ENSMUST00000219949 Gm47899 processed_pseudogene Interval_66940 chr16 38648091 38648645 + 0 NA intron (ENSMUSG00000022799.4, intron 1 of 1) protein_coding-intron (ENSMUSG00000022799.4, intron 1 of 11) 37501 ENSMUSG00000081651.1 ENSMUSG00000081651 ENSMUST00000122206 Gm15530 processed_pseudogene Interval_66899 chr16 38412165 38412472 + 0 NA intron (ENSMUSG00000002847.7, intron 4 of 10) protein_coding-intron (ENSMUSG00000002847.7, intron 4 of 10) 5476 ENSMUSG00000002847.7 ENSMUSG00000002847 ENSMUST00000232224 Pla1a protein_coding Interval_128355 chr5 112718433 112719087 + 0 NA intron (ENSMUSG00000072720.9, intron 7 of 10) protein_coding-intron (ENSMUSG00000072720.9, intron 40 of 43) 43385 ENSMUSG00000104807.1 ENSMUSG00000104807 ENSMUST00000197981 Gm42865 lincRNA Interval_94669 chr2 93180166 93181248 + 0 NA Intergenic Intergenic -6841 ENSMUSG00000068735.14 ENSMUSG00000068735 ENSMUST00000143164 Trp53i11 protein_coding Interval_166926 chr9 63970750 63972428 + 0 NA intron (ENSMUSG00000036867.7, intron 3 of 3) protein_coding-intron (ENSMUSG00000036867.7, intron 3 of 3) -43840 ENSMUSG00000111058.1 ENSMUSG00000111058 ENSMUST00000214827 Gm36033 lincRNA Interval_134693 chr6 30437237 30437635 + 0 NA intron (ENSMUSG00000029775.14, intron 2 of 9) protein_coding-intron (ENSMUSG00000029775.14, intron 1 of 8) -6334 ENSMUSG00000029775.14 ENSMUSG00000029775 ENSMUST00000150854 Klhdc10 protein_coding Interval_93069 chr2 69912352 69913311 + 0 NA intron (ENSMUSG00000044308.17, intron 1 of 7) protein_coding-intron (ENSMUSG00000044308.17, intron 1 of 38) 27103 ENSMUSG00000085735.1 ENSMUSG00000085735 ENSMUST00000129114 Mettl5os antisense Interval_22920 chr11 17414654 17415335 + 0 NA Intergenic Intergenic -116575 ENSMUSG00000082797.3 ENSMUSG00000082797 ENSMUST00000117065 Gm12015 processed_pseudogene Interval_76252 chr17 78491832 78492039 + 0 NA exon (ENSMUSG00000061062.5, exon 1 of 1) processed_pseudogene-exon (ENSMUSG00000061062.5, exon 1 of 1) 353 ENSMUSG00000061062.5 ENSMUSG00000061062 ENSMUST00000079363 Hdac1-ps processed_pseudogene Interval_144024 chr7 19029196 19029873 + 0 NA intron (ENSMUSG00000023118.15, intron 4 of 7) protein_coding-intron (ENSMUSG00000023118.15, intron 3 of 26) 5114 ENSMUSG00000023118.15 ENSMUSG00000023118 ENSMUST00000131230 Sympk protein_coding Interval_162116 chr8 125283658 125283946 + 0 NA Intergenic Intergenic -56479 ENSMUSG00000086694.1 ENSMUSG00000086694 ENSMUST00000156666 Gm16237 antisense Interval_40147 chr12 101957714 101958746 + 0 NA promoter-TSS (ENSMUSG00000021189.11) protein_coding-promoter-TSS (ENSMUSG00000021189.11) 13 ENSMUSG00000021189.11 ENSMUSG00000021189 ENSMUST00000159883 Atxn3 protein_coding Interval_101499 chr2 181986279 181986760 + 0 NA Intergenic Intergenic -4610 ENSMUSG00000098505.3 ENSMUSG00000098505 ENSMUST00000184507 Gm14496 protein_coding Interval_107938 chr3 117029760 117030462 + 0 NA Intergenic Intergenic -30525 ENSMUSG00000105221.1 ENSMUSG00000105221 ENSMUST00000198431 Gm9332 processed_pseudogene Interval_51536 chr14 29961178 29961547 + 0 NA promoter-TSS (ENSMUSG00000114424.1) lincRNA-promoter-TSS (ENSMUSG00000114424.1) 19 ENSMUSG00000114424.1 ENSMUSG00000114424 ENSMUST00000223774 Gm47414 lincRNA Interval_59147 chr15 44832693 44833442 + 0 NA intron (ENSMUSG00000060530.2, intron 2 of 9) transcribed_processed_pseudogene-intron (ENSMUSG00000060530.2, intron 2 of 2) -45004 ENSMUSG00000022340.15 ENSMUSG00000022340 ENSMUST00000228639 Sybu protein_coding Interval_121120 chr4 153233752 153234544 + 0 NA Intergenic Intergenic 15972 ENSMUSG00000087454.1 ENSMUSG00000087454 ENSMUST00000126141 Gm13174 lincRNA Interval_141544 chr6 129064331 129065135 + 0 NA Intergenic Intergenic -14898 ENSMUSG00000107811.1 ENSMUSG00000107811 ENSMUST00000205038 Gm44000 antisense Interval_110432 chr3 158064641 158064891 + 0 NA TTS (ENSMUSG00000063052.9) protein_coding-TTS (ENSMUSG00000063052.9) 11346 ENSMUSG00000104597.1 ENSMUSG00000104597 ENSMUST00000200255 B230334C09Rik antisense Interval_138944 chr6 93695660 93698051 + 0 NA intron (ENSMUSG00000045095.16, intron 18 of 24) protein_coding-intron (ENSMUSG00000045095.16, intron 16 of 21) -46630 ENSMUSG00000107739.1 ENSMUSG00000107739 ENSMUST00000203479 Gm7812 processed_pseudogene Interval_105892 chr3 89947839 89948923 + 0 NA promoter-TSS (ENSMUSG00000060671.12) protein_coding-promoter-TSS (ENSMUSG00000060671.12) -1909 ENSMUSG00000060671.12 ENSMUSG00000060671 ENSMUST00000171422 Atp8b2 protein_coding Interval_128327 chr5 112565519 112565891 + 0 NA intron (ENSMUSG00000058153.15, intron 1 of 14) protein_coding-intron (ENSMUSG00000058153.15, intron 1 of 16) 11163 ENSMUSG00000058153.15 ENSMUSG00000058153 ENSMUST00000212758 Sez6l protein_coding Interval_168504 chr9 82730866 82731177 + 0 NA Intergenic Intergenic -98519 ENSMUSG00000032251.12 ENSMUSG00000032251 ENSMUST00000034783 Irak1bp1 protein_coding Interval_151890 chr7 127362223 127364865 + 0 NA Intergenic Intergenic 12472 ENSMUSG00000054381.5 ENSMUSG00000054381 ENSMUST00000206942 Zfp747 protein_coding Interval_107075 chr3 103359103 103359444 + 0 NA TTS (ENSMUSG00000033014.12) protein_coding-TTS (ENSMUSG00000033014.12) 27130 ENSMUSG00000104925.1 ENSMUSG00000104925 ENSMUST00000198850 Gm43061 sense_intronic Interval_173743 chrX 103398644 103399081 + 0 NA Intergenic Intergenic -15605 ENSMUSG00000031329.4 ENSMUSG00000031329 ENSMUST00000033691 Tsx protein_coding Interval_88310 chr2 3570459 3570695 + 0 NA promoter-TSS (ENSMUSG00000026655.15) protein_coding-promoter-TSS (ENSMUSG00000026655.15) 89 ENSMUSG00000026655.15 ENSMUSG00000026655 ENSMUST00000176254 Fam107b protein_coding Interval_52864 chr14 51195545 51196374 + 0 NA promoter-TSS (ENSMUSG00000047894.2) protein_coding-promoter-TSS (ENSMUSG00000047894.2) 3189 ENSMUSG00000047894.2 ENSMUSG00000047894 ENSMUST00000051274 Ang2 protein_coding Interval_145217 chr7 30736178 30736575 + 0 NA intron (ENSMUSG00000109224.1, intron 2 of 4) protein_coding-intron (ENSMUSG00000061099.12, intron 4 of 10) -1277 ENSMUSG00000098146.1 ENSMUSG00000098146 ENSMUST00000182686 Gm26935 antisense Interval_172940 chrX 56819730 56820163 + 0 NA intron (ENSMUSG00000067878.13, intron 1 of 8) protein_coding-intron (ENSMUSG00000067878.13, intron 1 of 15) 2368 ENSMUSG00000067878.13 ENSMUSG00000067878 ENSMUST00000135542 Map7d3 protein_coding Interval_12285 chr1 191396125 191397927 + 0 NA promoter-TSS (ENSMUSG00000026626.11) protein_coding-promoter-TSS (ENSMUSG00000026626.11) 2273 ENSMUSG00000026626.11 ENSMUSG00000026626 ENSMUST00000194832 Ppp2r5a protein_coding Interval_93326 chr2 71964728 71965990 + 0 NA Intergenic Intergenic 9306 ENSMUSG00000087345.1 ENSMUSG00000087345 ENSMUST00000133981 Gm13746 lincRNA Interval_17693 chr10 79570365 79570608 + 0 NA Intergenic Intergenic 9634 ENSMUSG00000020317.14 ENSMUSG00000020317 ENSMUST00000020566 Theg protein_coding Interval_120930 chr4 151724354 151727131 + 0 NA intron (ENSMUSG00000014592.21, intron 2 of 7) protein_coding-intron (ENSMUSG00000014592.21, intron 3 of 23) 135962 ENSMUSG00000014592.21 ENSMUSG00000014592 ENSMUST00000135780 Camta1 protein_coding Interval_88419 chr2 4967423 4968589 + 0 NA Intergenic Intergenic -8178 ENSMUSG00000026668.10 ENSMUSG00000026668 ENSMUST00000195688 Ucma protein_coding Interval_14837 chr10 40381128 40381365 + 0 NA intron (ENSMUSG00000038481.13, intron 1 of 11) protein_coding-intron (ENSMUSG00000038481.13, intron 1 of 12) -31143 ENSMUSG00000038491.9 ENSMUSG00000038491 ENSMUST00000044774 Cdk19os antisense Interval_138873 chr6 92786814 92788014 + 0 NA intron (ENSMUSG00000030022.14, intron 27 of 29) protein_coding-intron (ENSMUSG00000030022.14, intron 37 of 39) -40218 ENSMUSG00000048636.7 ENSMUSG00000048636 ENSMUST00000133858 A730049H05Rik protein_coding Interval_40955 chr12 110241388 110242114 + 0 NA Intergenic Intergenic 5259 ENSMUSG00000113605.1 ENSMUSG00000113605 ENSMUST00000222054 4930425K24Rik TEC Interval_111919 chr4 32550963 32551612 + 0 NA intron (ENSMUSG00000040270.16, intron 2 of 4) protein_coding-intron (ENSMUSG00000040270.16, intron 4 of 7) 20421 ENSMUSG00000086150.1 ENSMUSG00000086150 ENSMUST00000149084 Bach2os antisense Interval_47618 chr13 90175381 90176436 + 0 NA Intergenic Intergenic 18754 ENSMUSG00000103228.1 ENSMUSG00000103228 ENSMUST00000191637 Gm37727 TEC Interval_140507 chr6 119016301 119016530 + 0 NA intron (ENSMUSG00000051331.16, intron 3 of 3) protein_coding-intron (ENSMUSG00000051331.16, intron 3 of 46) -175941 ENSMUSG00000041477.14 ENSMUSG00000041477 ENSMUST00000127059 Dcp1b protein_coding Interval_114038 chr4 62673270 62674601 + 0 NA promoter-TSS (ENSMUSG00000059810.18) protein_coding-promoter-TSS (ENSMUSG00000059810.18) -32046 ENSMUSG00000085223.1 ENSMUSG00000085223 ENSMUST00000150203 Gm11210 lincRNA Interval_144440 chr7 25181563 25182067 + 0 NA Intergenic Intergenic 26746 ENSMUSG00000074274.7 ENSMUSG00000074274 ENSMUST00000186424 D930028M14Rik lincRNA Interval_145219 chr7 30756698 30758066 + 0 NA Intergenic Intergenic 5820 ENSMUSG00000046056.15 ENSMUSG00000046056 ENSMUST00000182577 Sbsn protein_coding Interval_142664 chr6 144907498 144907755 + 0 NA Intergenic Intergenic -103994 ENSMUSG00000087850.1 ENSMUSG00000087850 ENSMUST00000157225 Gm22792 snoRNA Interval_90604 chr2 31418457 31419688 + 0 NA intron (ENSMUSG00000055632.18, intron 62 of 97) protein_coding-intron (ENSMUSG00000055632.18, intron 62 of 97) -81654 ENSMUSG00000076441.9 ENSMUSG00000076441 ENSMUST00000130195 Ass1 protein_coding Interval_100922 chr2 173351897 173352149 + 0 NA Intergenic Intergenic -42543 ENSMUSG00000086114.1 ENSMUSG00000086114 ENSMUST00000147357 Gm14642 lincRNA Interval_144540 chr7 25788365 25788890 + 0 NA promoter-TSS (ENSMUSG00000002602.16) protein_coding-promoter-TSS (ENSMUSG00000002602.16) -1561 ENSMUSG00000002602.16 ENSMUSG00000002602 ENSMUST00000137383 Axl protein_coding Interval_114868 chr4 86566593 86568357 + 0 NA Intergenic Intergenic -8193 ENSMUSG00000070934.6 ENSMUSG00000070934 ENSMUST00000091064 Rraga protein_coding Interval_62148 chr15 88212762 88213664 + 0 NA Intergenic Intergenic -101661 ENSMUSG00000116331.1 ENSMUSG00000116331 ENSMUST00000230919 B230214G05Rik lincRNA Interval_143617 chr7 13247017 13247487 + 0 NA Intergenic Intergenic 3090 ENSMUSG00000092427.1 ENSMUSG00000092427 ENSMUST00000172759 Vmn1r-ps69 unprocessed_pseudogene Interval_45045 chr13 51705088 51705288 + 0 NA promoter-TSS (ENSMUSG00000021451.16) protein_coding-promoter-TSS (ENSMUSG00000021451.16) 53391 ENSMUSG00000035139.14 ENSMUSG00000035139 ENSMUST00000153877 Secisbp2 protein_coding Interval_114207 chr4 67466637 67467072 + 0 NA Intergenic Intergenic 52078 ENSMUSG00000080815.1 ENSMUSG00000080815 ENSMUST00000117940 Hmgb1-rs18 processed_pseudogene Interval_130832 chr5 131079131 131079379 + 0 NA intron (ENSMUSG00000034040.16, intron 5 of 5) protein_coding-intron (ENSMUSG00000034040.16, intron 5 of 10) -36285 ENSMUSG00000106729.1 ENSMUSG00000106729 ENSMUST00000200842 Gm43165 TEC Interval_42508 chr13 14262004 14262225 + 0 NA intron (ENSMUSG00000021301.9, intron 15 of 17) protein_coding-intron (ENSMUSG00000021301.9, intron 23 of 28) -40176 ENSMUSG00000113563.1 ENSMUSG00000113563 ENSMUST00000221355 Gm2492 processed_pseudogene Interval_40445 chr12 104924007 104924932 + 0 NA Intergenic Intergenic 2220 ENSMUSG00000100975.2 ENSMUSG00000100975 ENSMUST00000185486 Gm28875 lincRNA Interval_75619 chr17 69397274 69398863 + 0 NA Intergenic Intergenic -13860 ENSMUSG00000117069.1 ENSMUSG00000117069 ENSMUST00000233910 Gm49894 lincRNA Interval_143857 chr7 16780021 16782419 + 0 NA promoter-TSS (ENSMUSG00000001918.17) protein_coding-promoter-TSS (ENSMUSG00000001918.17) -1178 ENSMUSG00000001918.17 ENSMUSG00000001918 ENSMUST00000141349 Slc1a5 protein_coding Interval_105226 chr3 83994166 83995877 + 0 NA intron (ENSMUSG00000033767.14, intron 3 of 33) protein_coding-intron (ENSMUSG00000033767.14, intron 3 of 33) 68431 ENSMUSG00000103261.1 ENSMUSG00000103261 ENSMUST00000192340 Gm36981 TEC Interval_58981 chr15 41286454 41287690 + 0 NA Intergenic Intergenic -43914 ENSMUSG00000116178.1 ENSMUSG00000116178 ENSMUST00000229823 Gm49529 processed_pseudogene Interval_53321 chr14 56143628 56144977 + 0 NA Intergenic Intergenic -11694 ENSMUSG00000059256.6 ENSMUSG00000059256 ENSMUST00000082093 Gzmd protein_coding Interval_139455 chr6 100298087 100298384 + 0 NA Intergenic Intergenic -11487 ENSMUSG00000072872.3 ENSMUSG00000072872 ENSMUST00000205164 Rybp protein_coding Interval_39908 chr12 99612033 99613048 + 0 NA intron (ENSMUSG00000097917.2, intron 2 of 3) bidirectional_promoter_lncRNA-intron (ENSMUSG00000097917.2, intron 2 of 3) 15434 ENSMUSG00000100211.1 ENSMUSG00000100211 ENSMUST00000185726 1700064M15Rik lincRNA Interval_131364 chr5 136730006 136730269 + 0 NA Intergenic Intergenic 32358 ENSMUSG00000005474.9 ENSMUSG00000005474 ENSMUST00000197849 Myl10 protein_coding Interval_128181 chr5 111565736 111565987 + 0 NA Intergenic Intergenic -15700 ENSMUSG00000052848.7 ENSMUSG00000052848 ENSMUST00000198458 C130026L21Rik lincRNA Interval_47504 chr13 85893024 85894015 + 0 NA Intergenic Intergenic 1777 ENSMUSG00000114900.1 ENSMUSG00000114900 ENSMUST00000224403 Gm46396 processed_pseudogene Interval_7132 chr1 126923650 126923918 + 0 NA Intergenic Intergenic -47169 ENSMUSG00000101600.1 ENSMUSG00000101600 ENSMUST00000188266 4930599A14Rik lincRNA Interval_140242 chr6 115752838 115753451 + 0 NA intron (ENSMUSG00000059900.14, intron 1 of 10) protein_coding-intron (ENSMUSG00000059900.14, intron 1 of 11) -2529 ENSMUSG00000098477.1 ENSMUSG00000098477 ENSMUST00000184176 Gm27853 misc_RNA Interval_1294 chr1 19240755 19242175 + 0 NA Intergenic Intergenic -1260 ENSMUSG00000100538.1 ENSMUSG00000100538 ENSMUST00000189218 Gm28340 lincRNA Interval_32745 chr11 110290994 110291719 + 0 NA intron (ENSMUSG00000018800.14, intron 24 of 27) protein_coding-intron (ENSMUSG00000018800.14, intron 23 of 38) -39580 ENSMUSG00000044749.13 ENSMUSG00000044749 ENSMUST00000150988 Abca6 protein_coding Interval_97320 chr2 133971805 133972066 + 0 NA Intergenic Intergenic -387514 ENSMUSG00000064983.1 ENSMUSG00000064983 ENSMUST00000083049 Gm25258 snRNA Interval_80115 chr18 37714672 37715468 + 0 NA exon (ENSMUSG00000103472.1, exon 1 of 4) protein_coding-exon (ENSMUSG00000103472.1, exon 1 of 4) 252 ENSMUSG00000103472.1 ENSMUSG00000103472 ENSMUST00000193476 Pcdhga7 protein_coding Interval_46607 chr13 67545664 67546550 + 0 NA intron (ENSMUSG00000095432.9, intron 2 of 3) protein_coding-intron (ENSMUSG00000095432.9, intron 2 of 2) -7095 ENSMUSG00000097360.8 ENSMUSG00000097360 ENSMUST00000180824 9430065F17Rik antisense Interval_30663 chr11 95756984 95757260 + 0 NA intron (ENSMUSG00000075595.9, intron 5 of 6) protein_coding-intron (ENSMUSG00000075595.9, intron 4 of 4) -4369 ENSMUSG00000082981.1 ENSMUSG00000082981 ENSMUST00000120170 Polr2k-ps processed_pseudogene Interval_132740 chr5 147500111 147500326 + 0 NA intron (ENSMUSG00000029647.15, intron 4 of 16) protein_coding-intron (ENSMUSG00000029647.15, intron 5 of 18) 60828 ENSMUSG00000107085.1 ENSMUSG00000107085 ENSMUST00000202594 Gm42883 processed_pseudogene Interval_36943 chr12 55499077 55499584 + 0 NA exon (ENSMUSG00000112348.1, exon 2 of 2) processed_transcript-exon (ENSMUSG00000112348.1, exon 2 of 2) 1609 ENSMUSG00000112348.1 ENSMUSG00000112348 ENSMUST00000218356 Gm36634 processed_transcript Interval_156032 chr8 43067983 43068592 + 0 NA Intergenic Intergenic -17300 ENSMUSG00000109627.1 ENSMUSG00000109627 ENSMUST00000209715 Gm45590 processed_pseudogene Interval_160335 chr8 108523294 108523480 + 0 NA intron (ENSMUSG00000038872.10, intron 4 of 15) protein_coding-intron (ENSMUSG00000038872.10, intron 4 of 15) 13834 ENSMUSG00000109868.1 ENSMUSG00000109868 ENSMUST00000211262 Gm39244 lincRNA Interval_91768 chr2 49391836 49392232 + 0 NA Intergenic Intergenic 6481 ENSMUSG00000077769.1 ENSMUSG00000077769 ENSMUST00000104581 Gm25215 snoRNA Interval_151237 chr7 119988324 119988910 + 0 NA intron (ENSMUSG00000052273.4, intron 40 of 60) protein_coding-intron (ENSMUSG00000052273.4, intron 40 of 60) 18796 ENSMUSG00000088172.1 ENSMUSG00000088172 ENSMUST00000157547 Gm25217 snRNA Interval_21842 chr11 4684397 4684711 + 0 NA exon (ENSMUSG00000020412.16, exon 19 of 19) protein_coding-exon (ENSMUSG00000020412.16, exon 19 of 19) 19780 ENSMUSG00000059534.8 ENSMUSG00000059534 ENSMUST00000130236 Uqcr10 protein_coding Interval_135703 chr6 43679224 43679415 + 0 NA Intergenic Intergenic -53353 ENSMUSG00000029735.17 ENSMUSG00000029735 ENSMUST00000114643 Tpk1 protein_coding Interval_142926 chr6 147032355 147033653 + 0 NA TTS (ENSMUSG00000016487.15) protein_coding-TTS (ENSMUSG00000016487.15) 420 ENSMUSG00000040121.5 ENSMUSG00000040121 ENSMUST00000036194 Rep15 protein_coding Interval_149535 chr7 99405084 99406048 + 0 NA intron (ENSMUSG00000035314.10, intron 3 of 4) protein_coding-intron (ENSMUSG00000035314.10, intron 2 of 17) -18547 ENSMUSG00000035314.10 ENSMUSG00000035314 ENSMUST00000208061 Gdpd5 protein_coding Interval_157220 chr8 68114608 68114804 + 0 NA intron (ENSMUSG00000030465.19, intron 1 of 1) protein_coding-intron (ENSMUSG00000030465.19, intron 1 of 1) 97321 ENSMUSG00000030465.19 ENSMUSG00000030465 ENSMUST00000178529 Psd3 protein_coding Interval_153185 chr7 142224341 142225124 + 0 NA TTS (ENSMUSG00000109581.1) processed_pseudogene-TTS (ENSMUSG00000109581.1) 1211 ENSMUSG00000109581.1 ENSMUSG00000109581 ENSMUST00000209791 Gm19094 processed_pseudogene Interval_91064 chr2 34778104 34778561 + 0 NA TTS (ENSMUSG00000026864.13) protein_coding-TTS (ENSMUSG00000026864.13) 4666 ENSMUSG00000026864.13 ENSMUSG00000026864 ENSMUST00000129333 Hspa5 protein_coding Interval_169726 chr9 100734152 100734368 + 0 NA intron (ENSMUSG00000037286.15, intron 3 of 8) protein_coding-intron (ENSMUSG00000037286.15, intron 3 of 32) 31047 ENSMUSG00000104272.1 ENSMUSG00000104272 ENSMUST00000195122 Gm38297 TEC Interval_67983 chr16 62663623 62665038 + 0 NA Intergenic Intergenic -52707 ENSMUSG00000085783.3 ENSMUSG00000085783 ENSMUST00000122292 Gm9816 processed_pseudogene Interval_36423 chr12 44306193 44306930 + 0 NA intron (ENSMUSG00000036257.15, intron 2 of 3) protein_coding-intron (ENSMUSG00000036257.15, intron 8 of 9) -22373 ENSMUSG00000020598.16 ENSMUSG00000020598 ENSMUST00000218062 Nrcam protein_coding Interval_150303 chr7 109475662 109475899 + 0 NA promoter-TSS (ENSMUSG00000031026.15) protein_coding-promoter-TSS (ENSMUSG00000031026.15) -646 ENSMUSG00000031026.15 ENSMUSG00000031026 ENSMUST00000137704 Trim66 protein_coding Interval_135471 chr6 39482556 39484425 + 0 NA intron (ENSMUSG00000038456.9, intron 3 of 10) protein_coding-intron (ENSMUSG00000038456.9, intron 11 of 18) 2966 ENSMUSG00000038456.9 ENSMUSG00000038456 ENSMUST00000154149 Dennd2a protein_coding Interval_84270 chr19 9130798 9131319 + 0 NA intron (ENSMUSG00000024654.8, intron 2 of 6) protein_coding-intron (ENSMUSG00000024654.8, intron 2 of 6) -4099 ENSMUSG00000024658.7 ENSMUSG00000024658 ENSMUST00000142025 Gm9750 antisense Interval_24553 chr11 34323430 34323772 + 0 NA intron (ENSMUSG00000069911.11, intron 1 of 3) protein_coding-intron (ENSMUSG00000069911.11, intron 1 of 4) 8843 ENSMUSG00000069911.11 ENSMUSG00000069911 ENSMUST00000093192 Insyn2b protein_coding Interval_139287 chr6 97895330 97895562 + 0 NA intron (ENSMUSG00000035158.15, intron 1 of 9) protein_coding-intron (ENSMUSG00000035158.15, intron 1 of 9) -4907 ENSMUSG00000083086.1 ENSMUSG00000083086 ENSMUST00000118062 Gm15531 processed_pseudogene Interval_91176 chr2 35677345 35677836 + 0 NA intron (ENSMUSG00000026883.17, intron 1 of 3) protein_coding-intron (ENSMUSG00000026883.17, intron 3 of 15) -32737 ENSMUSG00000026883.17 ENSMUSG00000026883 ENSMUST00000156669 Dab2ip protein_coding Interval_143657 chr7 14032507 14032755 + 0 NA Intergenic Intergenic 25973 ENSMUSG00000099744.1 ENSMUSG00000099744 ENSMUST00000186718 Tmem167-ps3 processed_pseudogene Interval_67371 chr16 48172759 48172966 + 0 NA Intergenic Intergenic -14363 ENSMUSG00000116755.1 ENSMUSG00000116755 ENSMUST00000232155 6430553K19Rik lincRNA Interval_56113 chr14 105884775 105886874 + 0 NA Intergenic Intergenic 10995 ENSMUSG00000022114.5 ENSMUSG00000022114 ENSMUST00000022709 Spry2 protein_coding Interval_74935 chr17 57530066 57530393 + 0 NA intron (ENSMUSG00000090655.2, intron 1 of 5) protein_coding-intron (ENSMUSG00000090655.2, intron 2 of 6) 15276 ENSMUSG00000090655.2 ENSMUSG00000090655 ENSMUST00000234162 Vmn2r120 protein_coding Interval_77008 chr17 85614169 85615175 + 0 NA promoter-TSS (ENSMUSG00000099317.1) misc_RNA-promoter-TSS (ENSMUSG00000099317.1) 10 ENSMUSG00000099317.1 ENSMUSG00000099317 ENSMUST00000184026 Gm27610 misc_RNA Interval_42962 chr13 21930829 21932006 + 0 NA Intergenic Intergenic -6401 ENSMUSG00000105839.1 ENSMUSG00000105839 ENSMUST00000196554 Gm44456 miRNA Interval_144165 chr7 19753769 19754236 + 0 NA Intergenic Intergenic -3519 ENSMUSG00000062300.14 ENSMUSG00000062300 ENSMUST00000207271 Nectin2 protein_coding Interval_104374 chr3 64407656 64407824 + 0 NA intron (ENSMUSG00000092049.9, intron 2 of 6) protein_coding-intron (ENSMUSG00000092049.9, intron 1 of 4) 7628 ENSMUSG00000092049.9 ENSMUSG00000092049 ENSMUST00000170280 Vmn2r4 protein_coding Interval_35734 chr12 28725947 28727723 + 0 NA intron (ENSMUSG00000020628.16, intron 3 of 6) protein_coding-intron (ENSMUSG00000020628.16, intron 3 of 11) 23594 ENSMUSG00000020628.16 ENSMUSG00000020628 ENSMUST00000221335 Trappc12 protein_coding Interval_78209 chr18 10142604 10143347 + 0 NA intron (ENSMUSG00000024290.9, intron 2 of 13) protein_coding-intron (ENSMUSG00000024290.9, intron 2 of 32) 2990 ENSMUSG00000058567.6 ENSMUSG00000058567 ENSMUST00000075609 Gm2531 pseudogene Interval_161556 chr8 121181434 121181718 + 0 NA intron (ENSMUSG00000092329.1, intron 1 of 15) protein_coding-intron (ENSMUSG00000092329.1, intron 1 of 15) 22026 ENSMUSG00000097097.2 ENSMUSG00000097097 ENSMUST00000212635 5033426O07Rik lincRNA Interval_137251 chr6 70758039 70758417 + 0 NA Intergenic Intergenic 31793 ENSMUSG00000076609.2 ENSMUSG00000076609 ENSMUST00000103410 Igkc IG_C_gene Interval_27070 chr11 62669799 62670487 + 0 NA Intergenic Intergenic 21308 ENSMUSG00000048497.11 ENSMUSG00000048497 ENSMUST00000129162 Mmgt2 protein_coding Interval_3292 chr1 55788939 55789225 + 0 NA Intergenic Intergenic 87057 ENSMUSG00000038349.10 ENSMUSG00000038349 ENSMUST00000187059 Plcl1 protein_coding Interval_36926 chr12 55404516 55404866 + 0 NA intron (ENSMUSG00000021024.14, intron 1 of 5) protein_coding-intron (ENSMUSG00000021024.14, intron 1 of 6) -8462 ENSMUSG00000059033.7 ENSMUSG00000059033 ENSMUST00000161190 Rpl18a-ps1 processed_pseudogene Interval_134612 chr6 29973044 29973301 + 0 NA Intergenic Intergenic 9528 ENSMUSG00000083961.1 ENSMUSG00000083961 ENSMUST00000122139 Gm13725 processed_pseudogene Interval_150853 chr7 115774487 115774953 + 0 NA intron (ENSMUSG00000051910.13, intron 4 of 11) protein_coding-intron (ENSMUSG00000051910.13, intron 4 of 16) 71431 ENSMUSG00000051910.13 ENSMUSG00000051910 ENSMUST00000206912 Sox6 protein_coding Interval_101584 chr3 7310927 7311601 + 0 NA Intergenic Intergenic 107195 ENSMUSG00000103274.1 ENSMUSG00000103274 ENSMUST00000192071 Gm37918 processed_pseudogene Interval_155506 chr8 33978463 33978996 + 0 NA Intergenic Intergenic -7185 ENSMUSG00000110663.1 ENSMUSG00000110663 ENSMUST00000212322 Gm39157 lincRNA Interval_33641 chr11 117699606 117700120 + 0 NA intron (ENSMUSG00000025571.13, intron 1 of 21) protein_coding-intron (ENSMUSG00000025571.13, intron 1 of 21) -49368 ENSMUSG00000025571.13 ENSMUSG00000025571 ENSMUST00000141287 Tnrc6c protein_coding Interval_27108 chr11 62950690 62951243 + 0 NA promoter-TSS (ENSMUSG00000042200.3) protein_coding-promoter-TSS (ENSMUSG00000042200.3) 113 ENSMUSG00000087039.1 ENSMUSG00000087039 ENSMUST00000128675 Cdrt4os2 antisense Interval_12036 chr1 188998809 188999566 + 0 NA intron (ENSMUSG00000026608.13, intron 4 of 12) protein_coding-intron (ENSMUSG00000026608.13, intron 4 of 17) 8654 ENSMUSG00000026608.13 ENSMUSG00000026608 ENSMUST00000193273 Kctd3 protein_coding Interval_148028 chr7 78511567 78512070 + 0 NA intron (ENSMUSG00000059146.12, intron 3 of 3) protein_coding-intron (ENSMUSG00000059146.12, intron 3 of 16) 63414 ENSMUSG00000108390.1 ENSMUSG00000108390 ENSMUST00000206774 Gm39038 sense_intronic Interval_15632 chr10 52491566 52491789 + 0 NA Intergenic Intergenic 23100 ENSMUSG00000112464.1 ENSMUSG00000112464 ENSMUST00000217713 Gm47609 processed_pseudogene Interval_105680 chr3 88539579 88540904 + 0 NA exon (ENSMUSG00000074480.4, exon 2 of 2) protein_coding-exon (ENSMUSG00000074480.4, exon 2 of 2) -3859 ENSMUSG00000084728.1 ENSMUSG00000084728 ENSMUST00000122779 Mir1905 miRNA Interval_93886 chr2 77944957 77946654 + 0 NA intron (ENSMUSG00000027014.14, intron 1 of 5) protein_coding-intron (ENSMUSG00000027014.14, intron 1 of 20) -9078 ENSMUSG00000027014.14 ENSMUSG00000027014 ENSMUST00000156863 Cwc22 protein_coding Interval_124297 chr5 43728491 43728878 + 0 NA intron (ENSMUSG00000039765.15, intron 32 of 39) protein_coding-intron (ENSMUSG00000039765.15, intron 32 of 39) 25587 ENSMUSG00000104728.1 ENSMUSG00000104728 ENSMUST00000196543 Gm42462 TEC Interval_12813 chr10 5790812 5791137 + 0 NA Intergenic Intergenic 13626 ENSMUSG00000019773.7 ENSMUSG00000019773 ENSMUST00000142200 Fbxo5 protein_coding Interval_93009 chr2 69546908 69547336 + 0 NA intron (ENSMUSG00000027070.14, intron 4 of 24) protein_coding-intron (ENSMUSG00000027070.14, intron 4 of 78) -37977 ENSMUSG00000027070.14 ENSMUSG00000027070 ENSMUST00000092551 Lrp2 protein_coding Interval_163772 chr9 25527908 25528297 + 0 NA intron (ENSMUSG00000036611.5, intron 2 of 7) protein_coding-intron (ENSMUSG00000036611.5, intron 2 of 7) 11103 ENSMUSG00000088876.1 ENSMUSG00000088876 ENSMUST00000158251 Gm25861 snoRNA Interval_37156 chr12 59054699 59055313 + 0 NA intron (ENSMUSG00000020993.9, intron 1 of 1) protein_coding-intron (ENSMUSG00000020993.9, intron 1 of 5) 6424 ENSMUSG00000020993.9 ENSMUSG00000020993 ENSMUST00000219652 Trappc6b protein_coding Interval_54740 chr14 74538543 74539206 + 0 NA intron (ENSMUSG00000115449.1, intron 2 of 2) lincRNA-intron (ENSMUSG00000115449.1, intron 2 of 2) 8673 ENSMUSG00000115449.1 ENSMUSG00000115449 ENSMUST00000227527 Gm49175 lincRNA Interval_85439 chr19 26244577 26244801 + 0 NA Intergenic Intergenic 5241 ENSMUSG00000117950.1 ENSMUSG00000117950 ENSMUST00000237746 Gm50376 lincRNA Interval_77251 chr17 87583461 87586057 + 0 NA Intergenic Intergenic -13105 ENSMUSG00000117414.1 ENSMUSG00000117414 ENSMUST00000234992 Gm46587 lincRNA Interval_52978 chr14 52533597 52533981 + 0 NA Intergenic Intergenic 7087 ENSMUSG00000104788.1 ENSMUSG00000104788 ENSMUST00000199916 Gm36448 unprocessed_pseudogene Interval_138902 chr6 93273894 93274302 + 0 NA Intergenic Intergenic 32378 ENSMUSG00000107655.1 ENSMUSG00000107655 ENSMUST00000203784 Gm44220 TEC Interval_14439 chr10 33747311 33747507 + 0 NA Intergenic Intergenic 32517 ENSMUSG00000112656.1 ENSMUSG00000112656 ENSMUST00000217937 Gm47929 unprocessed_pseudogene Interval_141457 chr6 128388380 128388723 + 0 NA intron (ENSMUSG00000085739.1, intron 1 of 1) antisense-intron (ENSMUSG00000085739.1, intron 1 of 1) 11189 ENSMUSG00000085739.1 ENSMUSG00000085739 ENSMUST00000146349 Gm15862 antisense Interval_123294 chr5 31174019 31174379 + 0 NA intron (ENSMUSG00000106864.3, intron 2 of 8) protein_coding-intron (ENSMUSG00000106864.3, intron 2 of 18) 5710 ENSMUSG00000106864.3 ENSMUSG00000106864 ENSMUST00000202300 Gtf3c2 protein_coding Interval_105206 chr3 83836631 83837060 + 0 NA exon (ENSMUSG00000027995.10, exon 3 of 3) protein_coding-exon (ENSMUSG00000027995.10, exon 3 of 3) 4922 ENSMUSG00000027995.10 ENSMUSG00000027995 ENSMUST00000029623 Tlr2 protein_coding Interval_56234 chr14 114359980 114360553 + 0 NA Intergenic Intergenic -49463 ENSMUSG00000115658.1 ENSMUSG00000115658 ENSMUST00000226772 Gm19829 processed_pseudogene Interval_166410 chr9 59254941 59255826 + 0 NA Intergenic Intergenic -20312 ENSMUSG00000110789.1 ENSMUSG00000110789 ENSMUST00000215275 Gm33053 lincRNA Interval_48629 chr13 100737806 100738282 + 0 NA intron (ENSMUSG00000061474.11, intron 3 of 3) protein_coding-intron (ENSMUSG00000061474.11, intron 4 of 4) 6069 ENSMUSG00000061474.11 ENSMUSG00000061474 ENSMUST00000150113 Mrps36 protein_coding Interval_31323 chr11 99932102 99933092 + 0 NA exon (ENSMUSG00000086688.4, exon 1 of 1) processed_pseudogene-exon (ENSMUSG00000086688.4, exon 1 of 1) 435 ENSMUSG00000086688.4 ENSMUSG00000086688 ENSMUST00000117567 Gm11560 processed_pseudogene Interval_73734 chr17 43070777 43071011 + 0 NA intron (ENSMUSG00000023915.5, intron 4 of 5) protein_coding-intron (ENSMUSG00000023915.5, intron 4 of 5) 54326 ENSMUSG00000023915.5 ENSMUSG00000023915 ENSMUST00000233482 Tnfrsf21 protein_coding Interval_74450 chr17 50734681 50735450 + 0 NA exon (ENSMUSG00000023923.10, exon 22 of 22) protein_coding-exon (ENSMUSG00000023923.10, exon 22 of 22) 36377 ENSMUSG00000044645.8 ENSMUSG00000044645 ENSMUST00000061681 Gm7334 processed_pseudogene Interval_53595 chr14 59691289 59691690 + 0 NA exon (ENSMUSG00000021983.16, exon 33 of 36) protein_coding-exon (ENSMUSG00000021983.16, exon 33 of 36) 48941 ENSMUSG00000114593.1 ENSMUSG00000114593 ENSMUST00000224256 Gm19716 transcribed_processed_pseudogene Interval_174815 chrX 167344123 167344624 + 0 NA Intergenic Intergenic -13930 ENSMUSG00000044583.13 ENSMUSG00000044583 ENSMUST00000149507 Tlr7 protein_coding Interval_62618 chr15 95653138 95655097 + 0 NA intron (ENSMUSG00000045608.7, intron 1 of 3) protein_coding-intron (ENSMUSG00000045608.7, intron 1 of 3) -21289 ENSMUSG00000045608.7 ENSMUSG00000045608 ENSMUST00000229611 Dbx2 protein_coding Interval_147584 chr7 68559333 68561355 + 0 NA Intergenic Intergenic 38510 ENSMUSG00000109375.1 ENSMUSG00000109375 ENSMUST00000208980 Gm44887 processed_pseudogene Interval_174211 chrX 139777443 139777724 + 0 NA Intergenic Intergenic 4770 ENSMUSG00000072945.3 ENSMUSG00000072945 ENSMUST00000101217 Ripply1 protein_coding Interval_42582 chr13 15821903 15823314 + 0 NA intron (ENSMUSG00000113701.1, intron 3 of 3) transcribed_processed_pseudogene-intron (ENSMUSG00000113701.1, intron 3 of 3) 5292 ENSMUSG00000113290.1 ENSMUSG00000113290 ENSMUST00000222059 A530058O07Rik TEC Interval_66766 chr16 37356204 37356445 + 0 NA intron (ENSMUSG00000022829.14, intron 2 of 4) protein_coding-intron (ENSMUSG00000022829.14, intron 2 of 22) 3572 ENSMUSG00000116854.1 ENSMUSG00000116854 ENSMUST00000232416 Gm49567 processed_pseudogene Interval_113918 chr4 59844948 59845198 + 0 NA intron (ENSMUSG00000028385.14, intron 1 of 8) protein_coding-intron (ENSMUSG00000028385.14, intron 1 of 8) 11396 ENSMUSG00000080772.1 ENSMUSG00000080772 ENSMUST00000120410 Gm12543 transcribed_processed_pseudogene Interval_15836 chr10 57841650 57842352 + 0 NA Intergenic Intergenic 47666 ENSMUSG00000019872.13 ENSMUSG00000019872 ENSMUST00000125076 Smpdl3a protein_coding Interval_43808 chr13 36734100 36737162 + 0 NA promoter-TSS (ENSMUSG00000039114.16) protein_coding-promoter-TSS (ENSMUSG00000039114.16) -500 ENSMUSG00000039114.16 ENSMUSG00000039114 ENSMUST00000224960 Nrn1 protein_coding Interval_165762 chr9 52266315 52266639 + 0 NA Intergenic Intergenic -24722 ENSMUSG00000077796.1 ENSMUSG00000077796 ENSMUST00000104608 Gm25562 snoRNA Interval_91220 chr2 36023114 36023940 + 0 NA Intergenic Intergenic 25879 ENSMUSG00000026895.7 ENSMUSG00000026895 ENSMUST00000070112 Ndufa8 protein_coding Interval_60799 chr15 76845129 76845861 + 0 NA Intergenic Intergenic 25490 ENSMUSG00000022526.8 ENSMUSG00000022526 ENSMUST00000230524 Zfp251 protein_coding Interval_161369 chr8 120001919 120002437 + 0 NA promoter-TSS (ENSMUSG00000031825.16) protein_coding-promoter-TSS (ENSMUSG00000031825.16) -11030 ENSMUSG00000031825.16 ENSMUSG00000031825 ENSMUST00000144801 Crispld2 protein_coding Interval_10972 chr1 177695768 177696053 + 0 NA Intergenic Intergenic -33904 ENSMUSG00000015962.5 ENSMUSG00000015962 ENSMUST00000016106 1700016C15Rik protein_coding Interval_89825 chr2 25714372 25714665 + 0 NA Intergenic Intergenic -6253 ENSMUSG00000087612.1 ENSMUSG00000087612 ENSMUST00000151069 A230005M16Rik antisense Interval_62149 chr15 88245330 88246046 + 0 NA Intergenic Intergenic -69186 ENSMUSG00000116331.1 ENSMUSG00000116331 ENSMUST00000230919 B230214G05Rik lincRNA Interval_121510 chr5 3012713 3013481 + 0 NA Intergenic Intergenic -12045 ENSMUSG00000098947.2 ENSMUSG00000098947 ENSMUST00000183378 V1rg10 polymorphic_pseudogene Interval_54862 chr14 75883228 75884207 + 0 NA Intergenic Intergenic 35812 ENSMUSG00000065147.1 ENSMUSG00000065147 ENSMUST00000083213 Snora31 snoRNA Interval_20028 chr10 112222320 112222780 + 0 NA intron (ENSMUSG00000112564.1, intron 1 of 2) antisense-intron (ENSMUSG00000112564.1, intron 1 of 2) 8591 ENSMUSG00000112564.1 ENSMUSG00000112564 ENSMUST00000219794 Gm47419 antisense Interval_20432 chr10 117594143 117595413 + 0 NA promoter-TSS (ENSMUSG00000043800.11) transcribed_processed_pseudogene-promoter-TSS (ENSMUSG00000043800.11) 52 ENSMUSG00000043800.11 ENSMUSG00000043800 ENSMUST00000179611 Kifc5c-ps transcribed_processed_pseudogene Interval_17614 chr10 78211204 78211807 + 0 NA exon (ENSMUSG00000000374.8, exon 8 of 23) protein_coding-exon (ENSMUSG00000000374.8, exon 8 of 23) -12406 ENSMUSG00000000374.8 ENSMUSG00000000374 ENSMUST00000217980 Trappc10 protein_coding Interval_52728 chr14 49130626 49130892 + 0 NA Intergenic Intergenic -8057 ENSMUSG00000115737.1 ENSMUSG00000115737 ENSMUST00000227008 Rpl19-ps3 transcribed_processed_pseudogene Interval_160643 chr8 111280838 111281232 + 0 NA intron (ENSMUSG00000033596.5, intron 8 of 8) protein_coding-intron (ENSMUSG00000033596.5, intron 8 of 12) 19156 ENSMUSG00000033596.5 ENSMUSG00000033596 ENSMUST00000212958 Rfwd3 protein_coding Interval_162110 chr8 125236107 125236412 + 0 NA intron (ENSMUSG00000043051.17, intron 12 of 13) protein_coding-intron (ENSMUSG00000043051.17, intron 11 of 12) -8936 ENSMUSG00000086694.1 ENSMUSG00000086694 ENSMUST00000156666 Gm16237 antisense Interval_76893 chr17 84776462 84777017 + 0 NA intron (ENSMUSG00000024120.12, intron 2 of 9) protein_coding-intron (ENSMUSG00000024120.12, intron 2 of 37) -8053 ENSMUSG00000117412.1 ENSMUSG00000117412 ENSMUST00000234983 Gm49979 TEC Interval_99112 chr2 157283462 157283685 + 0 NA promoter-TSS (ENSMUSG00000027642.15) protein_coding-promoter-TSS (ENSMUSG00000027642.15) 1630 ENSMUSG00000027642.15 ENSMUSG00000027642 ENSMUST00000149924 Rpn2 protein_coding Interval_53872 chr14 62996091 62996402 + 0 NA Intergenic Intergenic -1831 ENSMUSG00000075573.4 ENSMUSG00000075573 ENSMUST00000100492 Defb47 protein_coding Interval_106353 chr3 95565938 95566217 + 0 NA intron (ENSMUSG00000028109.14, intron 3 of 14) protein_coding-intron (ENSMUSG00000028109.14, intron 3 of 14) 6399 ENSMUSG00000028109.14 ENSMUSG00000028109 ENSMUST00000107154 Hormad1 protein_coding Interval_154289 chr8 14058203 14058767 + 0 NA intron (ENSMUSG00000051978.9, intron 3 of 4) protein_coding-intron (ENSMUSG00000051978.9, intron 3 of 5) 9333 ENSMUSG00000109982.1 ENSMUSG00000109982 ENSMUST00000210109 Gm45520 TEC Interval_76181 chr17 76220761 76220980 + 0 NA Intergenic Intergenic 63991 ENSMUSG00000066958.1 ENSMUSG00000066958 ENSMUST00000086601 Gm16391 processed_pseudogene Interval_12189 chr1 190709936 190710480 + 0 NA intron (ENSMUSG00000089872.10, intron 11 of 12) protein_coding-intron (ENSMUSG00000089872.10, intron 11 of 12) 115882 ENSMUSG00000103963.1 ENSMUSG00000103963 ENSMUST00000191893 Gm30932 lincRNA Interval_129454 chr5 120288132 120288745 + 0 NA TTS (ENSMUSG00000080412.1) miRNA-TTS (ENSMUSG00000080412.1) 712 ENSMUSG00000080412.1 ENSMUSG00000080412 ENSMUST00000116762 Gm26474 miRNA Interval_48836 chr13 103900960 103901448 + 0 NA intron (ENSMUSG00000021709.14, intron 1 of 26) protein_coding-intron (ENSMUSG00000021709.14, intron 1 of 25) 19091 ENSMUSG00000021709.14 ENSMUSG00000021709 ENSMUST00000189323 Erbin protein_coding Interval_36124 chr12 36115306 36115617 + 0 NA exon (ENSMUSG00000113732.1, exon 1 of 1) processed_pseudogene-exon (ENSMUSG00000113732.1, exon 1 of 1) 379 ENSMUSG00000113732.1 ENSMUSG00000113732 ENSMUST00000221209 Gm18115 processed_pseudogene Interval_137259 chr6 70815687 70815992 + 0 NA Intergenic Intergenic -23836 ENSMUSG00000053604.5 ENSMUSG00000053604 ENSMUST00000129244 Rpia protein_coding Interval_76552 chr17 81005305 81005557 + 0 NA Intergenic Intergenic 59651 ENSMUSG00000024246.9 ENSMUSG00000024246 ENSMUST00000234801 Thumpd2 protein_coding Interval_135687 chr6 43370270 43370622 + 0 NA intron (ENSMUSG00000029735.17, intron 6 of 6) protein_coding-intron (ENSMUSG00000029735.17, intron 8 of 8) -3359 ENSMUSG00000084325.2 ENSMUSG00000084325 ENSMUST00000120824 Gm15550 processed_pseudogene Interval_109404 chr3 141848948 141850072 + 0 NA intron (ENSMUSG00000052430.15, intron 9 of 11) protein_coding-intron (ENSMUSG00000052430.15, intron 8 of 10) 81998 ENSMUSG00000052430.15 ENSMUSG00000052430 ENSMUST00000106230 Bmpr1b protein_coding Interval_28651 chr11 77562212 77562662 + 0 NA intron (ENSMUSG00000017291.13, intron 10 of 19) protein_coding-intron (ENSMUSG00000017291.13, intron 9 of 18) 20304 ENSMUSG00000081451.1 ENSMUSG00000081451 ENSMUST00000120228 Gm12734 processed_pseudogene Interval_29139 chr11 80579808 80580050 + 0 NA intron (ENSMUSG00000035441.14, intron 20 of 21) protein_coding-intron (ENSMUSG00000035441.14, intron 20 of 21) -70823 ENSMUSG00000085078.1 ENSMUSG00000085078 ENSMUST00000133400 C030013C21Rik sense_intronic Interval_72943 chr17 33691744 33692253 + 0 NA exon (ENSMUSG00000079557.11, exon 5 of 5) protein_coding-exon (ENSMUSG00000079557.11, exon 5 of 5) -6597 ENSMUSG00000059208.15 ENSMUSG00000059208 ENSMUST00000127598 Hnrnpm protein_coding Interval_60497 chr15 74411186 74411642 + 0 NA intron (ENSMUSG00000118581.1, intron 4 of 4) unitary_pseudogene-intron (ENSMUSG00000118581.1, intron 4 of 4) 29030 ENSMUSG00000118581.1 ENSMUSG00000118581 ENSMUST00000239328 AC119183.1 unitary_pseudogene Interval_154024 chr8 12004571 12004781 + 0 NA Intergenic Intergenic 56337 ENSMUSG00000109995.1 ENSMUSG00000109995 ENSMUST00000209977 B020031H02Rik lincRNA Interval_77383 chr17 88346667 88347618 + 0 NA intron (ENSMUSG00000117351.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000117351.1, intron 1 of 1) -4660 ENSMUSG00000088791.1 ENSMUSG00000088791 ENSMUST00000158166 Gm22542 snRNA Interval_83360 chr18 84570155 84570377 + 0 NA intron (ENSMUSG00000048410.17, intron 1 of 8) protein_coding-intron (ENSMUSG00000048410.17, intron 1 of 8) -55479 ENSMUSG00000117676.1 ENSMUSG00000117676 ENSMUST00000236074 Gm50314 antisense Interval_33806 chr11 118654664 118655597 + 0 NA intron (ENSMUSG00000025576.17, intron 3 of 14) protein_coding-intron (ENSMUSG00000025576.17, intron 3 of 14) -136242 ENSMUSG00000085059.1 ENSMUSG00000085059 ENSMUST00000146016 Gm11750 lincRNA Interval_159116 chr8 90798794 90799272 + 0 NA Intergenic Intergenic -8086 ENSMUSG00000105321.1 ENSMUSG00000105321 ENSMUST00000198683 Gm44382 miRNA Interval_26553 chr11 58789775 58790133 + 0 NA Intergenic Intergenic 7002 ENSMUSG00000059504.7 ENSMUSG00000059504 ENSMUST00000076393 Olfr314 protein_coding Interval_11952 chr1 187594490 187594850 + 0 NA Intergenic Intergenic -15026 ENSMUSG00000026610.13 ENSMUSG00000026610 ENSMUST00000110938 Esrrg protein_coding Interval_78769 chr18 20540457 20543065 + 0 NA exon (ENSMUSG00000056632.8, exon 16 of 16) protein_coding-exon (ENSMUSG00000056632.8, exon 16 of 16) 7603 ENSMUSG00000117627.1 ENSMUSG00000117627 ENSMUST00000234000 Tpi-rs10 processed_pseudogene Interval_100981 chr2 173793902 173794178 + 0 NA exon (ENSMUSG00000085938.1, exon 5 of 5) unprocessed_pseudogene-exon (ENSMUSG00000085938.1, exon 5 of 5) 25840 ENSMUSG00000054455.5 ENSMUSG00000054455 ENSMUST00000154306 Vapb protein_coding Interval_59581 chr15 55570249 55571559 + 0 NA intron (ENSMUSG00000022369.13, intron 8 of 16) protein_coding-intron (ENSMUSG00000022369.13, intron 8 of 21) -13156 ENSMUSG00000022370.13 ENSMUSG00000022370 ENSMUST00000170135 Mrpl13 protein_coding Interval_90820 chr2 32795652 32796864 + 0 NA intron (ENSMUSG00000026797.16, intron 12 of 13) protein_coding-intron (ENSMUSG00000026797.16, intron 17 of 18) -17112 ENSMUSG00000038987.8 ENSMUSG00000038987 ENSMUST00000150918 Cfap157 protein_coding Interval_32410 chr11 107390757 107392478 + 0 NA intron (ENSMUSG00000040430.18, intron 1 of 9) protein_coding-intron (ENSMUSG00000040430.18, intron 1 of 9) 4634 ENSMUSG00000087683.1 ENSMUSG00000087683 ENSMUST00000129139 Gm11712 antisense Interval_93608 chr2 74825525 74826442 + 0 NA exon (ENSMUSG00000027099.9, exon 1 of 10) protein_coding-exon (ENSMUSG00000027099.9, exon 1 of 10) 153 ENSMUSG00000027099.9 ENSMUSG00000027099 ENSMUST00000129284 Mtx2 protein_coding Interval_85294 chr19 24451645 24452854 + 0 NA intron (ENSMUSG00000024867.14, intron 1 of 3) protein_coding-intron (ENSMUSG00000024867.14, intron 1 of 14) 25107 ENSMUSG00000074922.1 ENSMUSG00000074922 ENSMUST00000099556 Fam122a protein_coding Interval_168794 chr9 87151641 87151989 + 0 NA intron (ENSMUSG00000042761.14, intron 2 of 4) protein_coding-intron (ENSMUSG00000042761.14, intron 1 of 3) 7472 ENSMUSG00000042761.14 ENSMUSG00000042761 ENSMUST00000179313 Mrap2 protein_coding Interval_17238 chr10 75201995 75202203 + 0 NA Intergenic Intergenic 25723 ENSMUSG00000009681.10 ENSMUSG00000009681 ENSMUST00000219807 Bcr protein_coding Interval_32701 chr11 109810600 109811626 + 0 NA intron (ENSMUSG00000020617.13, intron 2 of 3) protein_coding-intron (ENSMUSG00000020617.13, intron 2 of 4) 2961 ENSMUSG00000020617.13 ENSMUSG00000020617 ENSMUST00000143578 1700012B07Rik protein_coding Interval_55017 chr14 76990081 76991906 + 0 NA Intergenic Intergenic 14744 ENSMUSG00000115303.1 ENSMUSG00000115303 ENSMUST00000227717 Gm4291 processed_pseudogene Interval_110832 chr4 8817748 8818384 + 0 NA intron (ENSMUSG00000041235.12, intron 7 of 37) protein_coding-intron (ENSMUSG00000041235.12, intron 7 of 37) -37165 ENSMUSG00000041235.12 ENSMUSG00000041235 ENSMUST00000222546 Chd7 protein_coding Interval_10354 chr1 169921203 169921977 + 0 NA Intergenic Intergenic -8339 ENSMUSG00000070532.5 ENSMUSG00000070532 ENSMUST00000175731 Ccdc190 protein_coding Interval_15 GL456211.1 82029 82913 + 0 NA NA NA NA NA Interval_84403 chr19 10653792 10654174 + 0 NA intron (ENSMUSG00000043789.8, intron 2 of 6) protein_coding-intron (ENSMUSG00000043789.8, intron 12 of 19) -5930 ENSMUSG00000118392.1 ENSMUSG00000118392 ENSMUST00000236337 4930524O05Rik antisense Interval_72031 chr17 27650157 27650543 + 0 NA Intergenic Intergenic -5238 ENSMUSG00000040276.15 ENSMUSG00000040276 ENSMUST00000231854 Pacsin1 protein_coding Interval_127837 chr5 108105784 108106199 + 0 NA TTS (ENSMUSG00000063406.11) protein_coding-TTS (ENSMUSG00000063406.11) 26539 ENSMUSG00000063406.11 ENSMUSG00000063406 ENSMUST00000119784 Tmed5 protein_coding Interval_89829 chr2 25749890 25750654 + 0 NA Intergenic Intergenic 13263 ENSMUSG00000079539.2 ENSMUSG00000079539 ENSMUST00000114192 Obp2b protein_coding Interval_171152 chr9 114791230 114792396 + 0 NA intron (ENSMUSG00000041012.4, intron 2 of 3) protein_coding-intron (ENSMUSG00000041012.4, intron 2 of 3) 11713 ENSMUSG00000052724.7 ENSMUSG00000052724 ENSMUST00000150678 Gm9888 antisense Interval_2210 chr1 37060680 37061018 + 0 NA intron (ENSMUSG00000050122.19, intron 6 of 26) protein_coding-intron (ENSMUSG00000050122.19, intron 5 of 24) 31516 ENSMUSG00000050122.19 ENSMUSG00000050122 ENSMUST00000194320 Vwa3b protein_coding Interval_155538 chr8 34171758 34172143 + 0 NA Intergenic Intergenic -5238 ENSMUSG00000098785.1 ENSMUSG00000098785 ENSMUST00000183885 Mir6395 miRNA Interval_72341 chr17 29302361 29304641 + 0 NA TTS (ENSMUSG00000052712.17) protein_coding-TTS (ENSMUSG00000052712.17) -4637 ENSMUSG00000094326.1 ENSMUSG00000094326 ENSMUST00000178657 Gm10045 transcribed_processed_pseudogene Interval_52865 chr14 51214626 51214826 + 0 NA Intergenic Intergenic 11335 ENSMUSG00000050766.2 ENSMUSG00000050766 ENSMUST00000049559 Ear14 protein_coding Interval_74670 chr17 55813599 55813893 + 0 NA intron (ENSMUSG00000032915.6, intron 11 of 16) protein_coding-intron (ENSMUSG00000032915.6, intron 11 of 16) 37383 ENSMUSG00000093740.1 ENSMUSG00000093740 ENSMUST00000176564 Gm18417 unprocessed_pseudogene Interval_94822 chr2 94923255 94923539 + 0 NA Intergenic Intergenic -131061 ENSMUSG00000077281.1 ENSMUSG00000077281 ENSMUST00000104093 Gm26396 snoRNA Interval_46500 chr13 66639808 66640911 + 0 NA Intergenic Intergenic -17454 ENSMUSG00000114814.1 ENSMUSG00000114814 ENSMUST00000223830 Gm48361 processed_pseudogene Interval_40432 chr12 104851977 104852774 + 0 NA intron (ENSMUSG00000021097.15, intron 1 of 14) protein_coding-intron (ENSMUSG00000021097.15, intron 1 of 12) -4996 ENSMUSG00000021101.2 ENSMUSG00000021101 ENSMUST00000021520 4930408O17Rik lincRNA Interval_112474 chr4 41470592 41471239 + 0 NA intron (ENSMUSG00000028443.6, intron 1 of 2) protein_coding-intron (ENSMUSG00000028443.6, intron 1 of 2) 5764 ENSMUSG00000028443.6 ENSMUSG00000028443 ENSMUST00000030154 Nudt2 protein_coding Interval_62025 chr15 85958800 85959029 + 0 NA intron (ENSMUSG00000016028.11, intron 4 of 33) protein_coding-intron (ENSMUSG00000016028.11, intron 5 of 34) -56715 ENSMUSG00000016028.11 ENSMUSG00000016028 ENSMUST00000227450 Celsr1 protein_coding Interval_173549 chrX 99152505 99153508 + 0 NA Intergenic Intergenic 14875 ENSMUSG00000031217.8 ENSMUSG00000031217 ENSMUST00000151750 Efnb1 protein_coding Interval_65745 chr16 26954105 26954615 + 0 NA intron (ENSMUSG00000068428.7, intron 3 of 7) protein_coding-intron (ENSMUSG00000068428.7, intron 3 of 7) 13885 ENSMUSG00000068428.7 ENSMUSG00000068428 ENSMUST00000231299 Gmnc protein_coding Interval_55160 chr14 78731777 78734723 + 0 NA promoter-TSS (ENSMUSG00000034731.11) protein_coding-promoter-TSS (ENSMUSG00000034731.11) -28853 ENSMUSG00000115514.1 ENSMUSG00000115514 ENSMUST00000226762 Gm49009 processed_pseudogene Interval_22776 chr11 15267079 15267325 + 0 NA Intergenic Intergenic -145098 ENSMUSG00000064746.1 ENSMUSG00000064746 ENSMUST00000082812 Gm24707 snRNA Interval_7078 chr1 125462731 125462967 + 0 NA Intergenic Intergenic 18282 ENSMUSG00000102063.1 ENSMUSG00000102063 ENSMUST00000186830 Gm28706 lincRNA Interval_67239 chr16 44679510 44680169 + 0 NA Intergenic Intergenic -44518 ENSMUSG00000036208.13 ENSMUSG00000036208 ENSMUST00000132610 Nepro protein_coding Interval_82434 chr18 73973402 73973787 + 0 NA intron (ENSMUSG00000024558.12, intron 1 of 1) protein_coding-intron (ENSMUSG00000024558.12, intron 1 of 5) -44313 ENSMUSG00000090263.1 ENSMUSG00000090263 ENSMUST00000159260 D730045A05Rik lincRNA Interval_172414 chrX 18360351 18360660 + 0 NA Intergenic Intergenic 16707 ENSMUSG00000081271.1 ENSMUSG00000081271 ENSMUST00000120179 Gm14883 processed_pseudogene Interval_12946 chr10 8552229 8552449 + 0 NA Intergenic Intergenic -90595 ENSMUSG00000077582.1 ENSMUSG00000077582 ENSMUST00000104394 Gm24374 snRNA Interval_107435 chr3 107654039 107654985 + 0 NA Intergenic Intergenic 23190 ENSMUSG00000078604.1 ENSMUSG00000078604 ENSMUST00000106703 Gm10961 protein_coding Interval_118615 chr4 132780357 132780833 + 0 NA Intergenic Intergenic 5467 ENSMUSG00000028884.14 ENSMUSG00000028884 ENSMUST00000156968 Rpa2 protein_coding Interval_9843 chr1 162910375 162910645 + 0 NA Intergenic Intergenic 27005 ENSMUSG00000095576.5 ENSMUSG00000095576 ENSMUST00000178465 Fmo6 protein_coding Interval_61836 chr15 84536112 84536359 + 0 NA Intergenic Intergenic 21588 ENSMUSG00000055745.4 ENSMUSG00000055745 ENSMUST00000069476 Rtl6 protein_coding Interval_98557 chr2 153210053 153211395 + 0 NA TTS (ENSMUSG00000068040.10) protein_coding-TTS (ENSMUSG00000068040.10) 10476 ENSMUSG00000068040.10 ENSMUSG00000068040 ENSMUST00000149390 Tm9sf4 protein_coding Interval_75661 chr17 70228460 70230702 + 0 NA intron (ENSMUSG00000003279.17, intron 3 of 8) protein_coding-intron (ENSMUSG00000003279.17, intron 3 of 14) -303750 ENSMUSG00000117078.1 ENSMUSG00000117078 ENSMUST00000232868 Gm4561 processed_pseudogene Interval_9955 chr1 164358524 164358726 + 0 NA intron (ENSMUSG00000026575.15, intron 2 of 3) protein_coding-intron (ENSMUSG00000026575.15, intron 8 of 12) 50898 ENSMUSG00000026575.15 ENSMUSG00000026575 ENSMUST00000192710 Nme7 protein_coding Interval_119193 chr4 136124771 136124962 + 0 NA Intergenic Intergenic -12630 ENSMUSG00000088614.1 ENSMUSG00000088614 ENSMUST00000157989 Gm26001 snRNA Interval_35912 chr12 31858332 31859146 + 0 NA TTS (ENSMUSG00000088242.1) scaRNA-TTS (ENSMUSG00000088242.1) 281 ENSMUSG00000088242.1 ENSMUSG00000088242 ENSMUST00000157617 Gm25913 scaRNA Interval_19511 chr10 101065497 101065866 + 0 NA Intergenic Intergenic -205940 ENSMUSG00000111906.1 ENSMUSG00000111906 ENSMUST00000219772 Gm19233 processed_pseudogene Interval_91115 chr2 35182985 35183320 + 0 NA TTS (ENSMUSG00000026878.17) protein_coding-TTS (ENSMUSG00000026878.17) 17824 ENSMUSG00000026878.17 ENSMUSG00000026878 ENSMUST00000126224 Rab14 protein_coding Interval_64129 chr16 8613238 8613408 + 0 NA intron (ENSMUSG00000057880.12, intron 1 of 3) protein_coding-intron (ENSMUSG00000057880.12, intron 13 of 15) 9947 ENSMUSG00000076039.1 ENSMUSG00000076039 ENSMUST00000102085 Gm22137 miRNA Interval_87951 chr19 57352866 57353426 + 0 NA intron (ENSMUSG00000097785.2, intron 1 of 2) processed_transcript-intron (ENSMUSG00000097785.2, intron 1 of 2) 7593 ENSMUSG00000097785.2 ENSMUSG00000097785 ENSMUST00000181921 B230217O12Rik processed_transcript Interval_66925 chr16 38562341 38563284 + 0 NA promoter-TSS (ENSMUSG00000002845.14) protein_coding-promoter-TSS (ENSMUSG00000002845.14) 0 ENSMUSG00000002845.14 ENSMUSG00000002845 ENSMUST00000165140 Tmem39a protein_coding Interval_23202 chr11 20541899 20543892 + 0 NA promoter-TSS (ENSMUSG00000049800.13) protein_coding-promoter-TSS (ENSMUSG00000049800.13) -358 ENSMUSG00000049800.13 ENSMUSG00000049800 ENSMUST00000109585 Sertad2 protein_coding Interval_150746 chr7 114071901 114072868 + 0 NA intron (ENSMUSG00000055723.6, intron 1 of 5) protein_coding-intron (ENSMUSG00000055723.6, intron 1 of 5) -14514 ENSMUSG00000110248.1 ENSMUSG00000110248 ENSMUST00000210417 Gm45615 antisense Interval_55540 chr14 91375249 91375481 + 0 NA Intergenic Intergenic -175487 ENSMUSG00000115225.1 ENSMUSG00000115225 ENSMUST00000226887 Gm7272 processed_pseudogene Interval_146534 chr7 46701563 46702610 + 0 NA exon (ENSMUSG00000006763.14, exon 7 of 13) protein_coding-exon (ENSMUSG00000006763.14, exon 7 of 13) 6831 ENSMUSG00000006763.14 ENSMUSG00000006763 ENSMUST00000209780 Saal1 protein_coding Interval_85641 chr19 29267260 29267956 + 0 NA intron (ENSMUSG00000024789.13, intron 2 of 23) protein_coding-intron (ENSMUSG00000024789.13, intron 2 of 23) 15167 ENSMUSG00000024789.13 ENSMUSG00000024789 ENSMUST00000238009 Jak2 protein_coding Interval_98993 chr2 156520046 156520326 + 0 NA intron (ENSMUSG00000027624.20, intron 14 of 20) protein_coding-intron (ENSMUSG00000027624.20, intron 14 of 21) 13792 ENSMUSG00000027624.20 ENSMUSG00000027624 ENSMUST00000137067 Epb41l1 protein_coding Interval_3390 chr1 57889937 57891136 + 0 NA intron (ENSMUSG00000038305.15, intron 7 of 9) protein_coding-intron (ENSMUSG00000038305.15, intron 5 of 11) 26575 ENSMUSG00000091283.1 ENSMUSG00000091283 ENSMUST00000172128 Gm17234 antisense Interval_38211 chr12 76383202 76385679 + 0 NA intron (ENSMUSG00000033454.6, intron 1 of 1) protein_coding-intron (ENSMUSG00000033454.6, intron 1 of 1) 14174 ENSMUSG00000033454.6 ENSMUSG00000033454 ENSMUST00000042779 Zbtb1 protein_coding Interval_133461 chr6 5371472 5371675 + 0 NA Intergenic Intergenic -18854 ENSMUSG00000042607.15 ENSMUSG00000042607 ENSMUST00000183358 Asb4 protein_coding Interval_127510 chr5 104734893 104735132 + 0 NA Intergenic Intergenic -40767 ENSMUSG00000048334.8 ENSMUSG00000048334 ENSMUST00000055593 Gm8258 processed_pseudogene Interval_10735 chr1 173793002 173794390 + 0 NA intron (ENSMUSG00000090222.2, intron 4 of 7) unprocessed_pseudogene-intron (ENSMUSG00000090222.2, intron 4 of 7) 4574 ENSMUSG00000090222.2 ENSMUSG00000090222 ENSMUST00000155076 Ifi203-ps unprocessed_pseudogene Interval_134464 chr6 28929407 28930118 + 0 NA intron (ENSMUSG00000001424.14, intron 16 of 16) protein_coding-intron (ENSMUSG00000001424.14, intron 16 of 16) -51872 ENSMUSG00000092090.2 ENSMUSG00000092090 ENSMUST00000164104 Gm3294 lincRNA Interval_24335 chr11 32475771 32476127 + 0 NA intron (ENSMUSG00000044949.4, intron 1 of 2) protein_coding-intron (ENSMUSG00000044949.4, intron 1 of 2) 20579 ENSMUSG00000044949.4 ENSMUSG00000044949 ENSMUST00000051053 Ubtd2 protein_coding Interval_118504 chr4 132145950 132146451 + 0 NA Intergenic Intergenic -1714 ENSMUSG00000050511.1 ENSMUSG00000050511 ENSMUST00000056336 Oprd1 protein_coding Interval_136630 chr6 56825604 56825867 + 0 NA Intergenic Intergenic -23598 ENSMUSG00000029781.7 ENSMUSG00000029781 ENSMUST00000147159 Fkbp9 protein_coding Interval_80525 chr18 43346417 43347558 + 0 NA intron (ENSMUSG00000024501.20, intron 6 of 13) protein_coding-intron (ENSMUSG00000024501.20, intron 6 of 13) 26236 ENSMUSG00000024501.20 ENSMUSG00000024501 ENSMUST00000118071 Dpysl3 protein_coding Interval_15700 chr10 53743764 53744034 + 0 NA intron (ENSMUSG00000019856.14, intron 1 of 2) protein_coding-intron (ENSMUSG00000019856.14, intron 1 of 17) 59630 ENSMUSG00000112809.1 ENSMUSG00000112809 ENSMUST00000217870 Gm47915 lincRNA Interval_165250 chr9 45776062 45777146 + 0 NA intron (ENSMUSG00000043987.18, intron 14 of 25) protein_coding-intron (ENSMUSG00000043987.18, intron 18 of 29) 17662 ENSMUSG00000043987.18 ENSMUSG00000043987 ENSMUST00000214868 Cep164 protein_coding Interval_90426 chr2 30377052 30377244 + 0 NA TTS (ENSMUSG00000026858.18) protein_coding-TTS (ENSMUSG00000026858.18) -4796 ENSMUSG00000026858.18 ENSMUSG00000026858 ENSMUST00000176517 Miga2 protein_coding Interval_115445 chr4 98990032 98990589 + 0 NA intron (ENSMUSG00000028556.15, intron 24 of 47) protein_coding-intron (ENSMUSG00000028556.15, intron 25 of 48) -42869 ENSMUSG00000028553.12 ENSMUSG00000028553 ENSMUST00000125546 Angptl3 protein_coding Interval_149004 chr7 91442557 91443188 + 0 NA intron (ENSMUSG00000052572.19, intron 1 of 13) protein_coding-intron (ENSMUSG00000052572.19, intron 1 of 22) -50183 ENSMUSG00000088216.1 ENSMUSG00000088216 ENSMUST00000157591 Gm22080 snRNA Interval_42972 chr13 21993939 21994554 + 0 NA Intergenic Intergenic 13052 ENSMUSG00000016982.6 ENSMUSG00000016982 ENSMUST00000017126 Pom121l2 protein_coding Interval_57303 chr15 8627055 8627697 + 0 NA Intergenic Intergenic 27697 ENSMUSG00000103047.1 ENSMUSG00000103047 ENSMUST00000195237 Gm37310 TEC Interval_167386 chr9 68157780 68158088 + 0 NA Intergenic Intergenic -77095 ENSMUSG00000101345.1 ENSMUSG00000101345 ENSMUST00000186992 Gm28195 lincRNA Interval_174178 chrX 137265109 137267180 + 0 NA Intergenic Intergenic -59381 ENSMUSG00000082955.1 ENSMUSG00000082955 ENSMUST00000118089 Gm8036 processed_pseudogene Interval_24185 chr11 31076470 31076691 + 0 NA intron (ENSMUSG00000020305.13, intron 7 of 9) protein_coding-intron (ENSMUSG00000020305.13, intron 7 of 9) -43423 ENSMUSG00000082049.1 ENSMUSG00000082049 ENSMUST00000120846 Gm12105 processed_pseudogene Interval_9980 chr1 164517066 164518666 + 0 NA Intergenic Intergenic 14557 ENSMUSG00000097281.2 ENSMUSG00000097281 ENSMUST00000181831 Gm26685 lincRNA Interval_41754 chr12 118703418 118703641 + 0 NA Intergenic Intergenic 29526 ENSMUSG00000113546.1 ENSMUSG00000113546 ENSMUST00000223539 Gm18441 processed_pseudogene Interval_106963 chr3 102212494 102215008 + 0 NA Intergenic Intergenic -9788 ENSMUSG00000027860.15 ENSMUSG00000027860 ENSMUST00000161722 Vangl1 protein_coding Interval_45409 chr13 54955425 54956608 + 0 NA intron (ENSMUSG00000025876.15, intron 1 of 14) protein_coding-intron (ENSMUSG00000025876.15, intron 1 of 15) -25760 ENSMUSG00000087335.2 ENSMUSG00000087335 ENSMUST00000144718 4930526F13Rik lincRNA Interval_137998 chr6 84059784 84060361 + 0 NA intron (ENSMUSG00000033788.15, intron 4 of 55) protein_coding-intron (ENSMUSG00000033788.15, intron 4 of 54) 28484 ENSMUSG00000108142.1 ENSMUSG00000108142 ENSMUST00000203282 Gm7498 processed_pseudogene Interval_52907 chr14 51996008 51998069 + 0 NA promoter-TSS (ENSMUSG00000004562.16) protein_coding-promoter-TSS (ENSMUSG00000004562.16) -7450 ENSMUSG00000004562.16 ENSMUSG00000004562 ENSMUST00000182504 Arhgef40 protein_coding Interval_110443 chr3 158219695 158220330 + 0 NA intron (ENSMUSG00000028176.13, intron 8 of 24) protein_coding-intron (ENSMUSG00000028176.13, intron 9 of 27) 13143 ENSMUSG00000104647.1 ENSMUSG00000104647 ENSMUST00000199292 Gm43485 TEC Interval_157797 chr8 73313507 73314343 + 0 NA intron (ENSMUSG00000004383.18, intron 1 of 14) protein_coding-intron (ENSMUSG00000004383.18, intron 1 of 14) 39615 ENSMUSG00000004383.18 ENSMUSG00000004383 ENSMUST00000146249 Large1 protein_coding Interval_16861 chr10 69324110 69325328 + 0 NA Intergenic Intergenic 12580 ENSMUSG00000112798.1 ENSMUSG00000112798 ENSMUST00000217861 Gm40685 lincRNA Interval_170745 chr9 110490892 110491169 + 0 NA intron (ENSMUSG00000032489.17, intron 6 of 17) protein_coding-intron (ENSMUSG00000032489.17, intron 5 of 20) 14072 ENSMUSG00000032489.17 ENSMUSG00000032489 ENSMUST00000084952 Kif9 protein_coding Interval_148197 chr7 79752357 79752695 + 0 NA intron (ENSMUSG00000039099.7, intron 4 of 17) protein_coding-intron (ENSMUSG00000039099.7, intron 4 of 17) 9363 ENSMUSG00000039099.7 ENSMUSG00000039099 ENSMUST00000035622 Wdr93 protein_coding Interval_63069 chr15 98943151 98943436 + 0 NA exon (ENSMUSG00000116494.1, exon 1 of 1) TEC-exon (ENSMUSG00000116494.1, exon 1 of 1) 743 ENSMUSG00000116494.1 ENSMUSG00000116494 ENSMUST00000229079 Gm49449 TEC Interval_55977 chr14 103550377 103550944 + 0 NA intron (ENSMUSG00000022123.9, intron 8 of 29) protein_coding-intron (ENSMUSG00000022123.9, intron 8 of 30) 37318 ENSMUSG00000022123.9 ENSMUSG00000022123 ENSMUST00000095576 Scel protein_coding Interval_158294 chr8 80895097 80896078 + 0 NA Intergenic Intergenic 15647 ENSMUSG00000109587.1 ENSMUSG00000109587 ENSMUST00000211421 Gm31105 antisense Interval_131079 chr5 134962132 134962482 + 0 NA Intergenic Intergenic -15373 ENSMUSG00000047501.3 ENSMUSG00000047501 ENSMUST00000051401 Cldn4 protein_coding Interval_138091 chr6 85110679 85110902 + 0 NA promoter-TSS (ENSMUSG00000107769.1) processed_pseudogene-promoter-TSS (ENSMUSG00000107769.1) -903 ENSMUSG00000107769.1 ENSMUSG00000107769 ENSMUST00000203740 Gm43959 processed_pseudogene Interval_32873 chr11 112653411 112654705 + 0 NA Intergenic Intergenic 57282 ENSMUSG00000041674.16 ENSMUSG00000041674 ENSMUST00000148724 BC006965 processed_transcript Interval_61635 chr15 83071888 83072705 + 0 NA Intergenic Intergenic -27967 ENSMUSG00000058586.12 ENSMUSG00000058586 ENSMUST00000169461 Serhl protein_coding Interval_49059 chr13 107619004 107620588 + 0 NA Intergenic Intergenic -6947 ENSMUSG00000114807.1 ENSMUSG00000114807 ENSMUST00000224826 Gm32090 lincRNA Interval_39007 chr12 84423282 84423472 + 0 NA intron (ENSMUSG00000057265.13, intron 1 of 5) protein_coding-intron (ENSMUSG00000057265.13, intron 5 of 11) 6181 ENSMUSG00000098134.1 ENSMUSG00000098134 ENSMUST00000183146 Rnf113a2 protein_coding Interval_98409 chr2 152149917 152150864 + 0 NA Intergenic Intergenic 6829 ENSMUSG00000068079.5 ENSMUSG00000068079 ENSMUST00000089112 Tcf15 protein_coding Interval_100543 chr2 170040836 170041421 + 0 NA intron (ENSMUSG00000047907.11, intron 1 of 1) protein_coding-intron (ENSMUSG00000047907.11, intron 1 of 1) -77941 ENSMUSG00000103935.1 ENSMUSG00000103935 ENSMUST00000194482 AY702102 TEC Interval_104754 chr3 70463447 70463806 + 0 NA Intergenic Intergenic 50307 ENSMUSG00000102663.1 ENSMUSG00000102663 ENSMUST00000193699 Gm6631 processed_pseudogene Interval_67163 chr16 44082969 44084002 + 0 NA Intergenic Intergenic -21940 ENSMUSG00000036292.14 ENSMUSG00000036292 ENSMUST00000214764 Gramd1c protein_coding Interval_17758 chr10 79926480 79927849 + 0 NA promoter-TSS (ENSMUSG00000019564.12) protein_coding-promoter-TSS (ENSMUSG00000019564.12) -5956 ENSMUSG00000035781.14 ENSMUSG00000035781 ENSMUST00000219867 R3hdm4 protein_coding Interval_32972 chr11 113444691 113445946 + 0 NA intron (ENSMUSG00000041654.15, intron 5 of 5) protein_coding-intron (ENSMUSG00000041654.15, intron 6 of 10) -22659 ENSMUSG00000078251.2 ENSMUSG00000078251 ENSMUST00000105048 Gm16487 pseudogene Interval_85624 chr19 29142981 29143345 + 0 NA exon (ENSMUSG00000024785.7, exon 9 of 9) protein_coding-exon (ENSMUSG00000024785.7, exon 9 of 9) 7884 ENSMUSG00000065556.1 ENSMUSG00000065556 ENSMUST00000083622 Mir101b miRNA Interval_71957 chr17 27221393 27222092 + 0 NA Intergenic Intergenic -4264 ENSMUSG00000118503.1 ENSMUSG00000118503 ENSMUST00000239096 AC141882.1 unitary_pseudogene Interval_143917 chr7 17350513 17350748 + 0 NA intron (ENSMUSG00000108782.1, intron 2 of 6) lincRNA-intron (ENSMUSG00000108782.1, intron 4 of 6) 20997 ENSMUSG00000108782.1 ENSMUSG00000108782 ENSMUST00000205898 Gm32772 lincRNA Interval_84724 chr19 15955131 15955760 + 0 NA TTS (ENSMUSG00000041491.8) protein_coding-TTS (ENSMUSG00000041491.8) -8108 ENSMUSG00000024640.9 ENSMUSG00000024640 ENSMUST00000162233 Psat1 protein_coding Interval_122164 chr5 18494498 18494813 + 0 NA Intergenic Intergenic -4461 ENSMUSG00000104718.1 ENSMUSG00000104718 ENSMUST00000199456 Gm31752 lincRNA Interval_145388 chr7 34388032 34390455 + 0 NA promoter-TSS (ENSMUSG00000066568.12) protein_coding-promoter-TSS (ENSMUSG00000066568.12) -489 ENSMUSG00000108732.1 ENSMUSG00000108732 ENSMUST00000205403 2310043P16Rik TEC Interval_87632 chr19 53838417 53839255 + 0 NA intron (ENSMUSG00000043639.15, intron 7 of 13) protein_coding-intron (ENSMUSG00000043639.15, intron 7 of 13) -13708 ENSMUSG00000089679.1 ENSMUSG00000089679 ENSMUST00000162724 Gm16299 antisense Interval_109087 chr3 135653395 135654423 + 0 NA exon (ENSMUSG00000106149.1, exon 1 of 1) TEC-exon (ENSMUSG00000106149.1, exon 1 of 1) 657 ENSMUSG00000106149.1 ENSMUSG00000106149 ENSMUST00000196513 Gm43430 TEC Interval_131922 chr5 140798389 140798624 + 0 NA intron (ENSMUSG00000000149.10, intron 1 of 2) protein_coding-intron (ENSMUSG00000000149.10, intron 1 of 3) 31651 ENSMUSG00000000149.10 ENSMUSG00000000149 ENSMUST00000198447 Gna12 protein_coding Interval_82058 chr18 67409810 67410041 + 0 NA intron (ENSMUSG00000024527.10, intron 9 of 9) protein_coding-intron (ENSMUSG00000024527.10, intron 14 of 16) 17658 ENSMUSG00000001473.7 ENSMUSG00000001473 ENSMUST00000236667 Tubb6 protein_coding Interval_63456 chr15 101197904 101199103 + 0 NA intron (ENSMUSG00000000532.11, intron 3 of 8) protein_coding-intron (ENSMUSG00000000532.11, intron 3 of 8) 4634 ENSMUSG00000106563.1 ENSMUSG00000106563 ENSMUST00000199512 Mir6962 miRNA Interval_167455 chr9 69480514 69480767 + 0 NA intron (ENSMUSG00000032231.14, intron 1 of 8) protein_coding-intron (ENSMUSG00000032231.14, intron 5 of 12) -1042 ENSMUSG00000086399.1 ENSMUSG00000086399 ENSMUST00000131093 Gm16144 antisense Interval_35036 chr12 16805557 16805744 + 0 NA Intergenic Intergenic -3016 ENSMUSG00000113897.1 ENSMUSG00000113897 ENSMUST00000222762 Gm48227 lincRNA Interval_130184 chr5 124791792 124792125 + 0 NA intron (ENSMUSG00000038011.15, intron 40 of 77) protein_coding-intron (ENSMUSG00000038011.15, intron 41 of 78) 5405 ENSMUSG00000038011.15 ENSMUSG00000038011 ENSMUST00000196708 Dnah10 protein_coding Interval_29274 chr11 82579751 82580613 + 0 NA Intergenic Intergenic 15997 ENSMUSG00000065201.1 ENSMUSG00000065201 ENSMUST00000083267 Gm24612 snRNA Interval_61212 chr15 80001858 80002335 + 0 NA TTS (ENSMUSG00000000489.7) protein_coding-TTS (ENSMUSG00000000489.7) -3070 ENSMUSG00000099222.1 ENSMUSG00000099222 ENSMUST00000183847 Mir7213 miRNA Interval_73028 chr17 34238663 34238994 + 0 NA promoter-TSS (ENSMUSG00000041538.16) protein_coding-promoter-TSS (ENSMUSG00000041538.16) -3253 ENSMUSG00000041538.16 ENSMUSG00000041538 ENSMUST00000172952 H2-Ob protein_coding Interval_127186 chr5 100915292 100915831 + 0 NA Intergenic Intergenic -1854 ENSMUSG00000106255.1 ENSMUSG00000106255 ENSMUST00000199211 Gm36793 lincRNA Interval_139998 chr6 113314990 113315565 + 0 NA exon (ENSMUSG00000001632.16, exon 3 of 13) protein_coding-exon (ENSMUSG00000001632.16, exon 3 of 13) 7964 ENSMUSG00000001632.16 ENSMUSG00000001632 ENSMUST00000131594 Brpf1 protein_coding Interval_105829 chr3 89574047 89574551 + 0 NA intron (ENSMUSG00000000794.9, intron 2 of 7) protein_coding-intron (ENSMUSG00000000794.9, intron 2 of 7) -88219 ENSMUSG00000000794.9 ENSMUSG00000000794 ENSMUST00000124584 Kcnn3 protein_coding Interval_15483 chr10 48541201 48541786 + 0 NA Intergenic Intergenic -5137 ENSMUSG00000111262.1 ENSMUSG00000111262 ENSMUST00000217071 Gm47354 lincRNA Interval_147638 chr7 70425347 70426084 + 0 NA intron (ENSMUSG00000108869.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000108869.1, intron 1 of 1) 27507 ENSMUSG00000108869.1 ENSMUSG00000108869 ENSMUST00000207723 Gm44532 lincRNA Interval_164925 chr9 43141991 43142822 + 0 NA intron (ENSMUSG00000032015.16, intron 2 of 8) protein_coding-intron (ENSMUSG00000032015.16, intron 6 of 12) 798 ENSMUSG00000032015.16 ENSMUSG00000032015 ENSMUST00000213862 Pou2f3 protein_coding Interval_103393 chr3 41172933 41173855 + 0 NA promoter-TSS (ENSMUSG00000105258.1) lincRNA-promoter-TSS (ENSMUSG00000105258.1) -731 ENSMUSG00000105258.1 ENSMUSG00000105258 ENSMUST00000197878 Gm40038 lincRNA Interval_109302 chr3 138781775 138782437 + 0 NA promoter-TSS (ENSMUSG00000028152.10) protein_coding-promoter-TSS (ENSMUSG00000028152.10) 39337 ENSMUSG00000028152.10 ENSMUSG00000028152 ENSMUST00000121826 Tspan5 protein_coding Interval_27372 chr11 67042492 67043630 + 0 NA intron (ENSMUSG00000020910.16, intron 1 of 2) protein_coding-intron (ENSMUSG00000020910.16, intron 2 of 4) 9530 ENSMUSG00000020910.16 ENSMUSG00000020910 ENSMUST00000146648 Adprm protein_coding Interval_47331 chr13 81496985 81497332 + 0 NA intron (ENSMUSG00000069170.14, intron 43 of 89) protein_coding-intron (ENSMUSG00000069170.14, intron 43 of 89) -3644 ENSMUSG00000114454.1 ENSMUSG00000114454 ENSMUST00000224788 Gm48567 processed_pseudogene Interval_67424 chr16 48564515 48565006 + 0 NA intron (ENSMUSG00000022652.7, intron 16 of 26) protein_coding-intron (ENSMUSG00000022652.7, intron 16 of 26) 85128 ENSMUSG00000022652.7 ENSMUSG00000022652 ENSMUST00000232195 Morc1 protein_coding Interval_63091 chr15 99024773 99025002 + 0 NA Intergenic Intergenic -5434 ENSMUSG00000043091.9 ENSMUSG00000043091 ENSMUST00000230447 Tuba1c protein_coding Interval_61760 chr15 83901963 83903118 + 0 NA intron (ENSMUSG00000022441.17, intron 23 of 31) protein_coding-intron (ENSMUSG00000022441.17, intron 6 of 14) 44059 ENSMUSG00000022441.17 ENSMUSG00000022441 ENSMUST00000122836 Efcab6 protein_coding Interval_78053 chr18 7548942 7549410 + 0 NA exon (ENSMUSG00000117556.1, exon 1 of 1) processed_pseudogene-exon (ENSMUSG00000117556.1, exon 1 of 1) 189 ENSMUSG00000117556.1 ENSMUSG00000117556 ENSMUST00000234527 Gm18948 processed_pseudogene Interval_65629 chr16 24399718 24400105 + 0 NA intron (ENSMUSG00000033306.15, intron 1 of 7) protein_coding-intron (ENSMUSG00000033306.15, intron 1 of 12) 6506 ENSMUSG00000087861.1 ENSMUSG00000087861 ENSMUST00000157236 Gm24440 snRNA Interval_34317 chr12 3356749 3357910 + 0 NA promoter-TSS (ENSMUSG00000097429.1) lincRNA-promoter-TSS (ENSMUSG00000097429.1) -176 ENSMUSG00000097429.1 ENSMUSG00000097429 ENSMUST00000180719 Gm26520 lincRNA Interval_134156 chr6 22070017 22070867 + 0 NA TTS (ENSMUSG00000062980.15) protein_coding-TTS (ENSMUSG00000062980.15) 44499 ENSMUSG00000062980.15 ENSMUSG00000062980 ENSMUST00000154734 Cped1 protein_coding Interval_161118 chr8 117591655 117592875 + 0 NA intron (ENSMUSG00000034330.10, intron 18 of 32) protein_coding-intron (ENSMUSG00000034330.10, intron 18 of 32) -45239 ENSMUSG00000092818.2 ENSMUSG00000092818 ENSMUST00000175077 Gm27361 miRNA Interval_164172 chr9 32158844 32159501 + 0 NA intron (ENSMUSG00000041444.14, intron 4 of 5) protein_coding-intron (ENSMUSG00000041444.14, intron 4 of 21) 15996 ENSMUSG00000111382.1 ENSMUSG00000111382 ENSMUST00000213983 Gm47536 processed_pseudogene Interval_31008 chr11 97683526 97686601 + 0 NA promoter-TSS (ENSMUSG00000078695.8) protein_coding-promoter-TSS (ENSMUSG00000078695.8) -914 ENSMUSG00000078695.8 ENSMUSG00000078695 ENSMUST00000145623 Cisd3 protein_coding Interval_9391 chr1 156748351 156748725 + 0 NA Intergenic Intergenic -44974 ENSMUSG00000046057.4 ENSMUSG00000046057 ENSMUST00000121352 Gm15428 processed_pseudogene Interval_86898 chr19 44706179 44707000 + 0 NA Intergenic Intergenic -11129 ENSMUSG00000097683.2 ENSMUSG00000097683 ENSMUST00000181365 Gm26644 lincRNA Interval_105580 chr3 87876396 87876615 + 0 NA intron (ENSMUSG00000004895.9, intron 1 of 6) protein_coding-intron (ENSMUSG00000004895.9, intron 1 of 6) 9103 ENSMUSG00000004895.9 ENSMUSG00000004895 ENSMUST00000005015 Prcc protein_coding Interval_65735 chr16 26371248 26371977 + 0 NA exon (ENSMUSG00000022512.3, exon 1 of 4) protein_coding-exon (ENSMUSG00000022512.3, exon 1 of 4) -10818 ENSMUSG00000022512.3 ENSMUSG00000022512 ENSMUST00000232215 Cldn1 protein_coding Interval_172086 chrX 7188133 7188777 + 0 NA intron (ENSMUSG00000004317.14, intron 3 of 6) protein_coding-intron (ENSMUSG00000004317.14, intron 1 of 11) 218 ENSMUSG00000004317.14 ENSMUSG00000004317 ENSMUST00000132126 Clcn5 protein_coding Interval_100281 chr2 168147655 168148832 + 0 NA exon (ENSMUSG00000085267.1, exon 2 of 2) lincRNA-exon (ENSMUSG00000085267.1, exon 2 of 2) 5290 ENSMUSG00000085267.1 ENSMUSG00000085267 ENSMUST00000142445 Gm14235 lincRNA Interval_48633 chr13 100757708 100758168 + 0 NA Intergenic Intergenic -12526 ENSMUSG00000085340.1 ENSMUSG00000085340 ENSMUST00000077495 Gm16335 processed_pseudogene Interval_8099 chr1 135723931 135724655 + 0 NA intron (ENSMUSG00000026421.14, intron 1 of 5) protein_coding-intron (ENSMUSG00000026421.14, intron 1 of 5) 4232 ENSMUSG00000026421.14 ENSMUSG00000026421 ENSMUST00000027677 Csrp1 protein_coding Interval_157098 chr8 65137712 65137923 + 0 NA Intergenic Intergenic -5503 ENSMUSG00000109935.1 ENSMUSG00000109935 ENSMUST00000210649 Gm7619 processed_pseudogene Interval_21518 chr10 129093371 129093576 + 0 NA exon (ENSMUSG00000050198.4, exon 1 of 1) protein_coding-exon (ENSMUSG00000050198.4, exon 1 of 1) 5861 ENSMUSG00000050198.4 ENSMUSG00000050198 ENSMUST00000063031 Olfr768 protein_coding Interval_105268 chr3 84373563 84374180 + 0 NA intron (ENSMUSG00000104004.1, intron 3 of 3) lincRNA-intron (ENSMUSG00000104004.1, intron 3 of 3) 6050 ENSMUSG00000104004.1 ENSMUSG00000104004 ENSMUST00000192777 4930565D16Rik lincRNA Interval_78694 chr18 17599271 17599641 + 0 NA Intergenic Intergenic -18466 ENSMUSG00000117615.1 ENSMUSG00000117615 ENSMUST00000234987 4930545E07Rik lincRNA Interval_123600 chr5 33702273 33702580 + 0 NA Intergenic Intergenic -19452 ENSMUSG00000106971.1 ENSMUSG00000106971 ENSMUST00000201254 Gm42965 processed_pseudogene Interval_82165 chr18 68234514 68235690 + 0 NA intron (ENSMUSG00000024544.9, intron 1 of 5) protein_coding-intron (ENSMUSG00000024544.9, intron 3 of 5) 7035 ENSMUSG00000024544.9 ENSMUSG00000024544 ENSMUST00000236987 Ldlrad4 protein_coding Interval_77013 chr17 85628660 85628938 + 0 NA exon (ENSMUSG00000038805.10, exon 3 of 3) protein_coding-exon (ENSMUSG00000038805.10, exon 3 of 3) -7798 ENSMUSG00000099635.1 ENSMUSG00000099635 ENSMUST00000188560 Gm28528 antisense Interval_74599 chr17 53614850 53615128 + 0 NA intron (ENSMUSG00000000708.14, intron 2 of 5) protein_coding-intron (ENSMUSG00000000708.14, intron 2 of 17) -16326 ENSMUSG00000096517.1 ENSMUSG00000096517 ENSMUST00000180049 Gm6919 processed_pseudogene Interval_171044 chr9 113946692 113948207 + 0 NA intron (ENSMUSG00000009741.15, intron 2 of 13) protein_coding-intron (ENSMUSG00000009741.15, intron 3 of 15) 15820 ENSMUSG00000009741.15 ENSMUSG00000009741 ENSMUST00000216293 Ubp1 protein_coding Interval_55644 chr14 97553468 97553681 + 0 NA Intergenic Intergenic 112717 ENSMUSG00000115598.1 ENSMUSG00000115598 ENSMUST00000227015 Gm9290 processed_pseudogene Interval_167967 chr9 75045353 75046088 + 0 NA intron (ENSMUSG00000007656.13, intron 2 of 3) protein_coding-intron (ENSMUSG00000007656.13, intron 1 of 2) -6257 ENSMUSG00000007656.13 ENSMUSG00000007656 ENSMUST00000166549 Arpp19 protein_coding Interval_165902 chr9 54527491 54528263 + 0 NA Intergenic Intergenic -9308 ENSMUSG00000087801.1 ENSMUSG00000087801 ENSMUST00000157176 Gm25980 misc_RNA Interval_111571 chr4 23625207 23626205 + 0 NA TTS (ENSMUSG00000089323.1) miRNA-TTS (ENSMUSG00000089323.1) 1039 ENSMUSG00000089323.1 ENSMUSG00000089323 ENSMUST00000158698 Gm25978 miRNA Interval_168607 chr9 84112005 84112234 + 0 NA intron (ENSMUSG00000032263.14, intron 1 of 2) protein_coding-intron (ENSMUSG00000032263.14, intron 9 of 10) -76236 ENSMUSG00000077666.1 ENSMUSG00000077666 ENSMUST00000104478 Gm26146 snRNA Interval_90885 chr2 33208728 33209813 + 0 NA intron (ENSMUSG00000038831.16, intron 8 of 17) protein_coding-intron (ENSMUSG00000038831.16, intron 7 of 16) 2671 ENSMUSG00000088836.1 ENSMUSG00000088836 ENSMUST00000158211 Gm23546 snoRNA Interval_104442 chr3 65692136 65692421 + 0 NA intron (ENSMUSG00000074579.14, intron 3 of 12) protein_coding-intron (ENSMUSG00000074579.14, intron 3 of 6) 13892 ENSMUSG00000104037.1 ENSMUSG00000104037 ENSMUST00000193471 Gm37776 TEC Interval_138228 chr6 86460194 86460459 + 0 NA intron (ENSMUSG00000046679.16, intron 8 of 10) protein_coding-intron (ENSMUSG00000046679.16, intron 7 of 9) 20504 ENSMUSG00000085589.7 ENSMUSG00000085589 ENSMUST00000154066 A430078I02Rik antisense Interval_105616 chr3 88141684 88143686 + 0 NA intron (ENSMUSG00000001419.17, intron 1 of 1) protein_coding-intron (ENSMUSG00000001419.17, intron 1 of 10) -25567 ENSMUSG00000001419.17 ENSMUSG00000001419 ENSMUST00000152861 Mef2d protein_coding Interval_168875 chr9 88281115 88281302 + 0 NA promoter-TSS (ENSMUSG00000100337.1) processed_pseudogene-promoter-TSS (ENSMUSG00000100337.1) -18 ENSMUSG00000100337.1 ENSMUSG00000100337 ENSMUST00000188479 Gm5066 processed_pseudogene Interval_170511 chr9 108423437 108423930 + 0 NA intron (ENSMUSG00000047220.5, intron 1 of 6) protein_coding-intron (ENSMUSG00000047220.5, intron 1 of 6) 4801 ENSMUSG00000047220.5 ENSMUSG00000047220 ENSMUST00000076592 Ccdc36 protein_coding Interval_106095 chr3 93014118 93016144 + 0 NA intron (ENSMUSG00000027913.5, intron 1 of 1) protein_coding-intron (ENSMUSG00000027913.5, intron 1 of 1) 538 ENSMUSG00000027913.5 ENSMUSG00000027913 ENSMUST00000107301 Crct1 protein_coding Interval_143601 chr7 13057093 13057763 + 0 NA Intergenic Intergenic -5048 ENSMUSG00000030380.17 ENSMUSG00000030380 ENSMUST00000183176 Mzf1 protein_coding Interval_100558 chr2 170119780 170120783 + 0 NA TTS (ENSMUSG00000052056.14) protein_coding-TTS (ENSMUSG00000052056.14) 27822 ENSMUSG00000052056.14 ENSMUSG00000052056 ENSMUST00000149318 Zfp217 protein_coding Interval_67954 chr16 60643369 60643911 + 0 NA Intergenic Intergenic -7054 ENSMUSG00000116853.1 ENSMUSG00000116853 ENSMUST00000231440 Gm49609 processed_pseudogene Interval_99626 chr2 163677073 163677805 + 0 NA intron (ENSMUSG00000035268.14, intron 1 of 3) protein_coding-intron (ENSMUSG00000035268.14, intron 1 of 3) 14840 ENSMUSG00000087129.1 ENSMUSG00000087129 ENSMUST00000154065 Gm16316 antisense Interval_170882 chr9 111522108 111524166 + 0 NA Intergenic Intergenic 25803 ENSMUSG00000106647.1 ENSMUSG00000106647 ENSMUST00000199378 Gm42523 lincRNA Interval_61447 chr15 81678418 81678792 + 0 NA exon (ENSMUSG00000063765.12, exon 5 of 5) protein_coding-exon (ENSMUSG00000063765.12, exon 5 of 5) 3083 ENSMUSG00000022394.14 ENSMUSG00000022394 ENSMUST00000173761 L3mbtl2 protein_coding Interval_20592 chr10 119254621 119255747 + 0 NA Intergenic Intergenic -42575 ENSMUSG00000020114.12 ENSMUSG00000020114 ENSMUST00000126373 Cand1 protein_coding Interval_124585 chr5 51908878 51909252 + 0 NA exon (ENSMUSG00000105942.1, exon 1 of 1) TEC-exon (ENSMUSG00000105942.1, exon 1 of 1) 1866 ENSMUSG00000105942.1 ENSMUSG00000105942 ENSMUST00000198450 Gm43175 TEC Interval_139243 chr6 97487424 97489098 + 0 NA promoter-TSS (ENSMUSG00000030064.16) protein_coding-promoter-TSS (ENSMUSG00000030064.16) 38511 ENSMUSG00000108185.1 ENSMUSG00000108185 ENSMUST00000204326 Gm19653 processed_pseudogene Interval_55315 chr14 82453359 82453873 + 0 NA Intergenic Intergenic -69087 ENSMUSG00000089266.1 ENSMUSG00000089266 ENSMUST00000158641 Gm22891 snRNA Interval_24426 chr11 33176453 33177220 + 0 NA Intergenic Intergenic 3917 ENSMUSG00000099902.1 ENSMUSG00000099902 ENSMUST00000119969 Gm12115 processed_pseudogene Interval_153347 chr7 143792580 143793849 + 0 NA Intergenic Intergenic -8714 ENSMUSG00000048965.9 ENSMUSG00000048965 ENSMUST00000054048 Mrgpre protein_coding Interval_91600 chr2 44471094 44472057 + 0 NA Intergenic Intergenic 42640 ENSMUSG00000088124.1 ENSMUSG00000088124 ENSMUST00000157499 Gm22867 snRNA Interval_17007 chr10 70387277 70387962 + 0 NA Intergenic Intergenic 27962 ENSMUSG00000112884.1 ENSMUSG00000112884 ENSMUST00000219437 Gm47946 lincRNA Interval_97891 chr2 144917884 144918645 + 0 NA Intergenic Intergenic 13414 ENSMUSG00000082858.1 ENSMUSG00000082858 ENSMUST00000119843 Gm11746 processed_pseudogene Interval_61351 chr15 80992510 80992792 + 0 NA intron (ENSMUSG00000042303.19, intron 1 of 4) protein_coding-intron (ENSMUSG00000042303.19, intron 1 of 4) 13759 ENSMUSG00000115976.1 ENSMUSG00000115976 ENSMUST00000230118 Gm31462 antisense Interval_76249 chr17 78434875 78435076 + 0 NA Intergenic Intergenic -23670 ENSMUSG00000117180.1 ENSMUSG00000117180 ENSMUST00000233571 Gm19399 processed_pseudogene Interval_7304 chr1 128679014 128679199 + 0 NA Intergenic Intergenic -71820 ENSMUSG00000099403.1 ENSMUSG00000099403 ENSMUST00000185285 Gm29599 processed_pseudogene Interval_56235 chr14 114382936 114383521 + 0 NA Intergenic Intergenic -72425 ENSMUSG00000115658.1 ENSMUSG00000115658 ENSMUST00000226772 Gm19829 processed_pseudogene Interval_63561 chr15 102045350 102045929 + 0 NA Intergenic Intergenic 17459 ENSMUSG00000023043.7 ENSMUSG00000023043 ENSMUST00000023803 Krt18 protein_coding Interval_38927 chr12 83868650 83868872 + 0 NA intron (ENSMUSG00000021224.15, intron 2 of 8) protein_coding-intron (ENSMUSG00000021224.15, intron 2 of 12) 7121 ENSMUSG00000113423.1 ENSMUSG00000113423 ENSMUST00000220790 Gm3791 processed_pseudogene Interval_81169 chr18 55548556 55549988 + 0 NA Intergenic Intergenic -32158 ENSMUSG00000103555.1 ENSMUSG00000103555 ENSMUST00000192601 Gm37337 TEC Interval_47842 chr13 93686700 93688260 + 0 NA intron (ENSMUSG00000042102.7, intron 3 of 15) protein_coding-intron (ENSMUSG00000042102.7, intron 3 of 15) -13178 ENSMUSG00000042118.7 ENSMUSG00000042118 ENSMUST00000015941 Bhmt2 protein_coding Interval_96834 chr2 128717674 128718427 + 0 NA intron (ENSMUSG00000014361.5, intron 1 of 18) protein_coding-intron (ENSMUSG00000014361.5, intron 1 of 18) 35655 ENSMUSG00000085036.1 ENSMUSG00000085036 ENSMUST00000145178 Gm14011 antisense Interval_161329 chr8 119781472 119781761 + 0 NA Intergenic Intergenic -3222 ENSMUSG00000034105.9 ENSMUSG00000034105 ENSMUST00000212534 Meak7 protein_coding Interval_6950 chr1 121288603 121288965 + 0 NA Intergenic Intergenic 12047 ENSMUSG00000104332.1 ENSMUSG00000104332 ENSMUST00000193041 Gm38283 TEC Interval_56708 chr14 121513243 121513677 + 0 NA intron (ENSMUSG00000115390.1, intron 3 of 3) lincRNA-intron (ENSMUSG00000115390.1, intron 3 of 3) 5670 ENSMUSG00000115390.1 ENSMUSG00000115390 ENSMUST00000226732 Gm49035 lincRNA Interval_138272 chr6 86758391 86758792 + 0 NA intron (ENSMUSG00000029994.17, intron 4 of 12) protein_coding-intron (ENSMUSG00000029994.17, intron 3 of 12) 25102 ENSMUSG00000107961.1 ENSMUSG00000107961 ENSMUST00000204551 Gm44036 lincRNA Interval_138186 chr6 86020896 86021396 + 0 NA TTS (ENSMUSG00000030001.4) protein_coding-TTS (ENSMUSG00000030001.4) 4975 ENSMUSG00000030001.4 ENSMUSG00000030001 ENSMUST00000032070 Figla protein_coding Interval_129873 chr5 122855969 122856529 + 0 NA intron (ENSMUSG00000029474.7, intron 1 of 1) protein_coding-intron (ENSMUSG00000029474.7, intron 1 of 5) 6092 ENSMUSG00000029474.7 ENSMUSG00000029474 ENSMUST00000198602 Rnf34 protein_coding Interval_121435 chr4 155774197 155775698 + 0 NA promoter-TSS (ENSMUSG00000042116.3) protein_coding-promoter-TSS (ENSMUSG00000042116.3) -249 ENSMUSG00000042116.3 ENSMUSG00000042116 ENSMUST00000042196 Vwa1 protein_coding Interval_163818 chr9 26828331 26828590 + 0 NA intron (ENSMUSG00000031966.7, intron 11 of 19) protein_coding-intron (ENSMUSG00000031966.7, intron 11 of 19) -4116 ENSMUSG00000031966.7 ENSMUSG00000031966 ENSMUST00000209592 Glb1l3 protein_coding Interval_97007 chr2 130441984 130442594 + 0 NA promoter-TSS (ENSMUSG00000027411.17) protein_coding-promoter-TSS (ENSMUSG00000027411.17) 1967 ENSMUSG00000027411.17 ENSMUSG00000027411 ENSMUST00000134677 Vps16 protein_coding Interval_106983 chr3 102469360 102470678 + 0 NA promoter-TSS (ENSMUSG00000027859.10) protein_coding-promoter-TSS (ENSMUSG00000027859.10) -18675 ENSMUSG00000027859.10 ENSMUSG00000027859 ENSMUST00000198644 Ngf protein_coding Interval_13253 chr10 13630939 13632760 + 0 NA intron (ENSMUSG00000112055.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000112055.1, intron 1 of 1) 4651 ENSMUSG00000112055.1 ENSMUSG00000112055 ENSMUST00000219684 Gm48773 lincRNA Interval_63415 chr15 100925693 100926037 + 0 NA intron (ENSMUSG00000023033.14, intron 2 of 2) protein_coding-intron (ENSMUSG00000023033.14, intron 1 of 26) -44257 ENSMUSG00000023033.14 ENSMUSG00000023033 ENSMUST00000201246 Scn8a protein_coding Interval_43687 chr13 35026862 35027201 + 0 NA promoter-TSS (ENSMUSG00000021417.15) protein_coding-promoter-TSS (ENSMUSG00000021417.15) 65 ENSMUSG00000021417.15 ENSMUSG00000021417 ENSMUST00000220713 Eci2 protein_coding Interval_126727 chr5 92348430 92349363 + 0 NA promoter-TSS (ENSMUSG00000034855.13) protein_coding-promoter-TSS (ENSMUSG00000034855.13) -29 ENSMUSG00000034855.13 ENSMUSG00000034855 ENSMUST00000138169 Cxcl10 protein_coding Interval_52943 chr14 52170938 52171619 + 0 NA intron (ENSMUSG00000035726.8, intron 21 of 25) protein_coding-intron (ENSMUSG00000035726.8, intron 21 of 25) -8148 ENSMUSG00000035726.8 ENSMUSG00000035726 ENSMUST00000227577 Supt16 protein_coding Interval_153315 chr7 143557438 143557995 + 0 NA TTS (ENSMUSG00000010755.17) protein_coding-TTS (ENSMUSG00000010755.17) 7299 ENSMUSG00000010755.17 ENSMUSG00000010755 ENSMUST00000207168 Cars protein_coding Interval_123536 chr5 33310701 33312314 + 0 NA promoter-TSS (ENSMUSG00000092275.1) lincRNA-promoter-TSS (ENSMUSG00000092275.1) -357 ENSMUSG00000092275.1 ENSMUSG00000092275 ENSMUST00000174768 Gm20465 lincRNA Interval_25343 chr11 46536799 46538016 + 0 NA intron (ENSMUSG00000078924.1, intron 6 of 6) protein_coding-intron (ENSMUSG00000078924.1, intron 6 of 6) 2674 ENSMUSG00000081713.1 ENSMUSG00000081713 ENSMUST00000119281 Gm12170 unprocessed_pseudogene Interval_7040 chr1 123322829 123323070 + 0 NA exon (ENSMUSG00000036815.17, exon 26 of 26) protein_coding-exon (ENSMUSG00000036815.17, exon 26 of 26) 35375 ENSMUSG00000101495.1 ENSMUSG00000101495 ENSMUST00000189001 Gm28912 processed_pseudogene Interval_41177 chr12 111640198 111640448 + 0 NA intron (ENSMUSG00000007411.16, intron 13 of 15) protein_coding-intron (ENSMUSG00000007411.16, intron 14 of 15) 23453 ENSMUSG00000113910.1 ENSMUSG00000113910 ENSMUST00000220971 Gm48286 sense_overlapping Interval_171324 chr9 116366813 116367103 + 0 NA Intergenic Intergenic 35790 ENSMUSG00000110752.1 ENSMUSG00000110752 ENSMUST00000217456 D730003K21Rik lincRNA Interval_167457 chr9 69488733 69490063 + 0 NA intron (ENSMUSG00000032231.14, intron 7 of 8) protein_coding-intron (ENSMUSG00000032231.14, intron 11 of 12) 2615 ENSMUSG00000032231.14 ENSMUSG00000032231 ENSMUST00000154591 Anxa2 protein_coding Interval_95273 chr2 105444053 105444511 + 0 NA Intergenic Intergenic -32219 ENSMUSG00000086764.1 ENSMUSG00000086764 ENSMUST00000130677 4930527A07Rik lincRNA Interval_79600 chr18 33944065 33944285 + 0 NA intron (ENSMUSG00000024376.7, intron 2 of 2) protein_coding-intron (ENSMUSG00000024376.7, intron 2 of 23) 62791 ENSMUSG00000024376.7 ENSMUSG00000024376 ENSMUST00000237971 Epb41l4a protein_coding Interval_46834 chr13 71958786 71959967 + 0 NA promoter-TSS (ENSMUSG00000060969.9) protein_coding-promoter-TSS (ENSMUSG00000060969.9) 1340 ENSMUSG00000060969.9 ENSMUSG00000060969 ENSMUST00000223460 Irx1 protein_coding Interval_170382 chr9 107580420 107581296 + 0 NA promoter-TSS (ENSMUSG00000036091.8) protein_coding-promoter-TSS (ENSMUSG00000036091.8) 1261 ENSMUSG00000010051.15 ENSMUSG00000010051 ENSMUST00000184695 Hyal1 protein_coding Interval_12775 chr10 5227297 5228239 + 0 NA exon (ENSMUSG00000096054.3, exon 77 of 146) protein_coding-exon (ENSMUSG00000096054.3, exon 77 of 146) -42242 ENSMUSG00000096054.3 ENSMUSG00000096054 ENSMUST00000214945 Syne1 protein_coding Interval_33671 chr11 117848377 117849716 + 0 NA promoter-TSS (ENSMUSG00000017716.15) protein_coding-promoter-TSS (ENSMUSG00000017716.15) -273 ENSMUSG00000017716.15 ENSMUSG00000017716 ENSMUST00000093906 Birc5 protein_coding Interval_144101 chr7 19421074 19421725 + 0 NA promoter-TSS (ENSMUSG00000040705.2) antisense-promoter-TSS (ENSMUSG00000040705.2) 18 ENSMUSG00000040705.2 ENSMUSG00000040705 ENSMUST00000047020 A930016O22Rik antisense Interval_139130 chr6 95691776 95693017 + 0 NA intron (ENSMUSG00000061838.7, intron 1 of 10) protein_coding-intron (ENSMUSG00000061838.7, intron 1 of 10) -34928 ENSMUSG00000061838.7 ENSMUSG00000061838 ENSMUST00000203109 Suclg2 protein_coding Interval_152090 chr7 129099906 129100164 + 0 NA Intergenic Intergenic -44959 ENSMUSG00000108785.1 ENSMUSG00000108785 ENSMUST00000206489 Gm4259 processed_pseudogene Interval_91657 chr2 45910855 45911606 + 0 NA Intergenic Intergenic 101758 ENSMUSG00000083807.1 ENSMUSG00000083807 ENSMUST00000121515 Gm13466 processed_pseudogene Interval_162190 chr8 125788405 125788609 + 0 NA exon (ENSMUSG00000060212.13, exon 24 of 34) protein_coding-exon (ENSMUSG00000060212.13, exon 24 of 34) 40526 ENSMUSG00000060212.13 ENSMUSG00000060212 ENSMUST00000187772 Pcnx2 protein_coding Interval_59739 chr15 58976608 58977878 + 0 NA intron (ENSMUSG00000022353.10, intron 3 of 14) protein_coding-intron (ENSMUSG00000022353.10, intron 3 of 14) -6893 ENSMUSG00000115062.1 ENSMUSG00000115062 ENSMUST00000226216 4930544F09Rik antisense Interval_19579 chr10 103719543 103719860 + 0 NA Intergenic Intergenic -137308 ENSMUSG00000098173.1 ENSMUSG00000098173 ENSMUST00000182615 Gm26923 processed_pseudogene Interval_62508 chr15 93587600 93588667 + 0 NA intron (ENSMUSG00000036158.12, intron 1 of 7) protein_coding-intron (ENSMUSG00000036158.12, intron 1 of 7) -68610 ENSMUSG00000036158.12 ENSMUSG00000036158 ENSMUST00000048982 Prickle1 protein_coding Interval_3629 chr1 60088885 60089105 + 0 NA intron (ENSMUSG00000026019.15, intron 5 of 5) protein_coding-intron (ENSMUSG00000026019.15, intron 4 of 12) -3233 ENSMUSG00000026019.15 ENSMUSG00000026019 ENSMUST00000133767 Wdr12 protein_coding Interval_88763 chr2 10370438 10375743 + 0 NA intron (ENSMUSG00000061186.15, intron 1 of 3) protein_coding-intron (ENSMUSG00000061186.15, intron 1 of 22) 642 ENSMUSG00000061186.15 ENSMUSG00000061186 ENSMUST00000041105 Sfmbt2 protein_coding Interval_51867 chr14 33161090 33161688 + 0 NA intron (ENSMUSG00000051506.17, intron 2 of 61) protein_coding-intron (ENSMUSG00000051506.17, intron 2 of 58) 24119 ENSMUSG00000051506.17 ENSMUSG00000051506 ENSMUST00000159606 Wdfy4 protein_coding Interval_126703 chr5 92141643 92142112 + 0 NA promoter-TSS (ENSMUSG00000084111.4) processed_pseudogene-promoter-TSS (ENSMUSG00000084111.4) -948 ENSMUSG00000084111.4 ENSMUSG00000084111 ENSMUST00000121821 Gm15710 processed_pseudogene Interval_100075 chr2 166947853 166948292 + 0 NA TTS (ENSMUSG00000039536.16) protein_coding-TTS (ENSMUSG00000039536.16) 4533 ENSMUSG00000090397.1 ENSMUSG00000090397 ENSMUST00000172037 Gm17096 antisense Interval_121650 chr5 4340514 4341083 + 0 NA Intergenic Intergenic 148431 ENSMUSG00000053178.5 ENSMUSG00000053178 ENSMUST00000177258 Mterf1b protein_coding Interval_136281 chr6 52482703 52483053 + 0 NA Intergenic Intergenic -9573 ENSMUSG00000107895.1 ENSMUSG00000107895 ENSMUST00000203771 1700094M24Rik lincRNA Interval_129400 chr5 119743766 119744215 + 0 NA Intergenic Intergenic -52772 ENSMUSG00000086847.1 ENSMUSG00000086847 ENSMUST00000135385 Tbx3os2 lincRNA Interval_95408 chr2 108730202 108730531 + 0 NA Intergenic Intergenic 3836 ENSMUSG00000083697.1 ENSMUSG00000083697 ENSMUST00000118202 Gm13914 processed_pseudogene Interval_4330 chr1 72764603 72765919 + 0 NA Intergenic Intergenic 53947 ENSMUSG00000046330.10 ENSMUSG00000046330 ENSMUST00000211963 Rpl37a protein_coding Interval_172998 chrX 60889935 60890173 + 0 NA Intergenic Intergenic 3376 ENSMUSG00000045179.9 ENSMUSG00000045179 ENSMUST00000135107 Sox3 protein_coding Interval_3026 chr1 52304733 52305479 + 0 NA Intergenic Intergenic -16011 ENSMUSG00000099648.1 ENSMUSG00000099648 ENSMUST00000185256 Gm5975 processed_pseudogene Interval_2737 chr1 44034865 44035920 + 0 NA Intergenic Intergenic -16743 ENSMUSG00000090106.1 ENSMUSG00000090106 ENSMUST00000161575 Gm15838 processed_pseudogene Interval_8365 chr1 138119767 138120331 + 0 NA exon (ENSMUSG00000026395.16, exon 5 of 5) protein_coding-exon (ENSMUSG00000026395.16, exon 5 of 5) 47634 ENSMUSG00000104291.1 ENSMUSG00000104291 ENSMUST00000194467 A130071D04Rik TEC Interval_35547 chr12 24675494 24675817 + 0 NA intron (ENSMUSG00000062563.15, intron 1 of 4) protein_coding-intron (ENSMUSG00000062563.15, intron 1 of 4) 6140 ENSMUSG00000062563.15 ENSMUSG00000062563 ENSMUST00000172771 Cys1 protein_coding Interval_106884 chr3 101514019 101514219 + 0 NA Intergenic Intergenic 66936 ENSMUSG00000104737.1 ENSMUSG00000104737 ENSMUST00000197360 Gm42937 sense_intronic Interval_68055 chr16 64777232 64778768 + 0 NA Intergenic Intergenic -11344 ENSMUSG00000059920.9 ENSMUSG00000059920 ENSMUST00000076991 4930453N24Rik protein_coding Interval_95080 chr2 103747130 103748506 + 0 NA intron (ENSMUSG00000027185.15, intron 8 of 11) protein_coding-intron (ENSMUSG00000027185.15, intron 8 of 28) 13377 ENSMUSG00000027185.15 ENSMUSG00000027185 ENSMUST00000148798 Nat10 protein_coding Interval_155451 chr8 33662636 33663833 + 0 NA intron (ENSMUSG00000031584.16, intron 1 of 12) protein_coding-intron (ENSMUSG00000031584.16, intron 1 of 12) 10711 ENSMUSG00000031584.16 ENSMUSG00000031584 ENSMUST00000149528 Gsr protein_coding Interval_59766 chr15 59109917 59110091 + 0 NA Intergenic Intergenic -27999 ENSMUSG00000022353.10 ENSMUSG00000022353 ENSMUST00000227797 Mtss1 protein_coding Interval_25742 chr11 51274443 51274830 + 0 NA promoter-TSS (ENSMUSG00000020385.16) protein_coding-promoter-TSS (ENSMUSG00000020385.16) 4201 ENSMUSG00000093734.1 ENSMUSG00000093734 ENSMUST00000177296 Gm25082 misc_RNA Interval_43665 chr13 34760685 34761025 + 0 NA Intergenic Intergenic 21243 ENSMUSG00000038246.7 ENSMUSG00000038246 ENSMUST00000221037 Fam50b protein_coding Interval_136471 chr6 54774961 54776132 + 0 NA Intergenic Intergenic -41724 ENSMUSG00000058446.14 ENSMUSG00000058446 ENSMUST00000127331 Znrf2 protein_coding Interval_91616 chr2 44630926 44631178 + 0 NA intron (ENSMUSG00000036890.13, intron 4 of 4) protein_coding-intron (ENSMUSG00000036890.13, intron 3 of 7) -157213 ENSMUSG00000083849.1 ENSMUSG00000083849 ENSMUST00000121620 Gm13477 processed_pseudogene Interval_42639 chr13 17589204 17589581 + 0 NA intron (ENSMUSG00000055137.7, intron 6 of 13) protein_coding-intron (ENSMUSG00000055137.7, intron 6 of 13) 105345 ENSMUSG00000055137.7 ENSMUSG00000055137 ENSMUST00000221467 Sugct protein_coding Interval_131117 chr5 135236557 135236827 + 0 NA intron (ENSMUSG00000002748.7, intron 14 of 18) protein_coding-intron (ENSMUSG00000002748.7, intron 14 of 18) 14538 ENSMUSG00000049551.2 ENSMUSG00000049551 ENSMUST00000062572 Fzd9 protein_coding Interval_133186 chr5 150414665 150414943 + 0 NA intron (ENSMUSG00000056602.12, intron 33 of 60) protein_coding-intron (ENSMUSG00000056602.12, intron 33 of 60) 27500 ENSMUSG00000118543.1 ENSMUSG00000118543 ENSMUST00000239092 AC154885.1 unprocessed_pseudogene Interval_120974 chr4 152016150 152016387 + 0 NA exon (ENSMUSG00000073700.3, exon 4 of 4) protein_coding-exon (ENSMUSG00000073700.3, exon 4 of 4) -6649 ENSMUSG00000108391.1 ENSMUSG00000108391 ENSMUST00000206007 Gm9768 TEC Interval_165508 chr9 48839460 48839930 + 0 NA Intergenic Intergenic -3473 ENSMUSG00000066687.5 ENSMUSG00000066687 ENSMUST00000216150 Zbtb16 protein_coding Interval_31830 chr11 103192209 103194069 + 0 NA promoter-TSS (ENSMUSG00000092371.1) antisense-promoter-TSS (ENSMUSG00000092371.1) -243 ENSMUSG00000092371.1 ENSMUSG00000092371 ENSMUST00000174079 Gm20511 antisense Interval_2166 chr1 36813567 36815414 + 0 NA intron (ENSMUSG00000026116.11, intron 4 of 4) protein_coding-intron (ENSMUSG00000026116.11, intron 25 of 40) 35506 ENSMUSG00000026117.10 ENSMUSG00000026117 ENSMUST00000190128 Zap70 protein_coding Interval_42900 chr13 21228311 21228775 + 0 NA Intergenic Intergenic -40987 ENSMUSG00000113104.1 ENSMUSG00000113104 ENSMUST00000220690 Gm47806 antisense Interval_171497 chr9 118833484 118833709 + 0 NA intron (ENSMUSG00000039115.13, intron 2 of 4) protein_coding-intron (ENSMUSG00000039115.13, intron 19 of 27) 4359 ENSMUSG00000066270.3 ENSMUSG00000066270 ENSMUST00000139408 Gm10157 processed_pseudogene Interval_56 GL456212.1 96684 97898 + 0 NA NA NA NA NA Interval_6401 chr1 107120149 107120749 + 0 NA Intergenic Intergenic 18120 ENSMUSG00000083884.1 ENSMUSG00000083884 ENSMUST00000121578 Gm15388 processed_pseudogene Interval_96115 chr2 119864280 119864563 + 0 NA Intergenic Intergenic 13982 ENSMUSG00000081056.1 ENSMUSG00000081056 ENSMUST00000120952 Gm13998 processed_pseudogene Interval_140090 chr6 114041316 114042907 + 0 NA promoter-TSS (ENSMUSG00000030302.16) protein_coding-promoter-TSS (ENSMUSG00000030302.16) -11832 ENSMUSG00000107540.1 ENSMUSG00000107540 ENSMUST00000203097 Gm43911 processed_pseudogene Interval_32297 chr11 106741931 106742751 + 0 NA intron (ENSMUSG00000020717.19, intron 1 of 15) protein_coding-intron (ENSMUSG00000020717.19, intron 1 of 15) -8924 ENSMUSG00000040528.15 ENSMUSG00000040528 ENSMUST00000182479 Milr1 protein_coding Interval_61448 chr15 81680135 81681233 + 0 NA intron (ENSMUSG00000063765.12, intron 4 of 4) protein_coding-intron (ENSMUSG00000022394.14, intron 8 of 16) 5162 ENSMUSG00000022394.14 ENSMUSG00000022394 ENSMUST00000173761 L3mbtl2 protein_coding Interval_147872 chr7 74719108 74720155 + 0 NA Intergenic Intergenic 19775 ENSMUSG00000108570.1 ENSMUSG00000108570 ENSMUST00000206241 Gm7726 processed_pseudogene Interval_113983 chr4 62262102 62262735 + 0 NA promoter-TSS (ENSMUSG00000066152.11) protein_coding-promoter-TSS (ENSMUSG00000066152.11) -144 ENSMUSG00000066152.11 ENSMUSG00000066152 ENSMUST00000107467 Slc31a2 protein_coding Interval_68925 chr16 88938216 88938674 + 0 NA Intergenic Intergenic -6180 ENSMUSG00000057174.5 ENSMUSG00000057174 ENSMUST00000077715 Krtap19-9b protein_coding Interval_55358 chr14 84445554 84448459 + 0 NA exon (ENSMUSG00000035566.7, exon 1 of 4) protein_coding-exon (ENSMUSG00000035566.7, exon 1 of 4) -1501 ENSMUSG00000035566.7 ENSMUSG00000035566 ENSMUST00000226362 Pcdh17 protein_coding Interval_34328 chr12 3408402 3408704 + 0 NA intron (ENSMUSG00000071456.6, intron 1 of 1) antisense-intron (ENSMUSG00000071456.6, intron 1 of 2) -4487 ENSMUSG00000112308.1 ENSMUSG00000112308 ENSMUST00000217965 Gm48512 antisense Interval_104865 chr3 76509143 76509873 + 0 NA intron (ENSMUSG00000034098.14, intron 7 of 15) protein_coding-intron (ENSMUSG00000034098.14, intron 7 of 15) -37183 ENSMUSG00000103920.1 ENSMUSG00000103920 ENSMUST00000192613 Gm37897 TEC Interval_60696 chr15 76223489 76224073 + 0 NA intron (ENSMUSG00000022565.15, intron 2 of 18) protein_coding-intron (ENSMUSG00000022565.15, intron 1 of 31) -8108 ENSMUSG00000087899.1 ENSMUSG00000087899 ENSMUST00000157274 Mir1942 miRNA Interval_97606 chr2 140394903 140396367 + 0 NA promoter-TSS (ENSMUSG00000068205.14) protein_coding-promoter-TSS (ENSMUSG00000068205.14) 45012 ENSMUSG00000065769.1 ENSMUSG00000065769 ENSMUST00000083835 Gm23846 snRNA Interval_51554 chr14 30108828 30109634 + 0 NA intron (ENSMUSG00000015968.18, intron 20 of 40) protein_coding-intron (ENSMUSG00000015968.18, intron 21 of 48) 14469 ENSMUSG00000118437.1 ENSMUSG00000118437 ENSMUST00000238444 Gm50467 antisense Interval_32542 chr11 108311465 108311728 + 0 NA intron (ENSMUSG00000050965.14, intron 2 of 2) protein_coding-intron (ENSMUSG00000050965.14, intron 2 of 16) -66281 ENSMUSG00000084916.1 ENSMUSG00000084916 ENSMUST00000137462 Gm11656 sense_intronic Interval_86224 chr19 37912797 37913157 + 0 NA intron (ENSMUSG00000048612.16, intron 46 of 53) protein_coding-intron (ENSMUSG00000048612.16, intron 45 of 52) 42707 ENSMUSG00000118115.1 ENSMUSG00000118115 ENSMUST00000237198 Gm4757 processed_pseudogene Interval_35750 chr12 28841905 28842816 + 0 NA intron (ENSMUSG00000036613.8, intron 4 of 8) protein_coding-intron (ENSMUSG00000036613.8, intron 5 of 9) 32222 ENSMUSG00000113886.1 ENSMUSG00000113886 ENSMUST00000222829 Gm48905 sense_intronic Interval_74573 chr17 53501625 53501866 + 0 NA promoter-TSS (ENSMUSG00000117128.1) antisense-promoter-TSS (ENSMUSG00000117128.1) -799 ENSMUSG00000117128.1 ENSMUSG00000117128 ENSMUST00000232747 Gm49915 antisense Interval_170410 chr9 107729694 107730019 + 0 NA Intergenic Intergenic 30707 ENSMUSG00000032580.12 ENSMUSG00000032580 ENSMUST00000181993 Rbm5 protein_coding Interval_142138 chr6 137550499 137551493 + 0 NA intron (ENSMUSG00000015766.14, intron 1 of 20) protein_coding-intron (ENSMUSG00000015766.14, intron 2 of 21) 19763 ENSMUSG00000015766.14 ENSMUSG00000015766 ENSMUST00000205037 Eps8 protein_coding Interval_30747 chr11 96250530 96252508 + 0 NA promoter-TSS (ENSMUSG00000078706.4) lincRNA-promoter-TSS (ENSMUSG00000078706.4) -125 ENSMUSG00000078706.4 ENSMUSG00000078706 ENSMUST00000143887 Gm53 lincRNA Interval_61406 chr15 81386270 81387561 + 0 NA promoter-TSS (ENSMUSG00000022403.15) protein_coding-promoter-TSS (ENSMUSG00000022403.15) 7688 ENSMUSG00000022403.15 ENSMUSG00000022403 ENSMUST00000169204 St13 protein_coding Interval_121326 chr4 154992317 154992564 + 0 NA intron (ENSMUSG00000029055.17, intron 1 of 9) protein_coding-intron (ENSMUSG00000029055.17, intron 13 of 21) 22441 ENSMUSG00000029056.13 ENSMUSG00000029056 ENSMUST00000129386 Pank4 protein_coding Interval_57495 chr15 11818105 11818409 + 0 NA Intergenic Intergenic 87417 ENSMUSG00000022206.7 ENSMUSG00000022206 ENSMUST00000226878 Npr3 protein_coding Interval_10608 chr1 172194173 172194488 + 0 NA intron (ENSMUSG00000026554.15, intron 4 of 4) protein_coding-intron (ENSMUSG00000026554.15, intron 12 of 12) 12367 ENSMUSG00000013698.12 ENSMUSG00000013698 ENSMUST00000152432 Pea15a protein_coding Interval_92440 chr2 59737877 59738916 + 0 NA intron (ENSMUSG00000035168.16, intron 3 of 25) protein_coding-intron (ENSMUSG00000035168.16, intron 4 of 26) -67672 ENSMUSG00000035168.16 ENSMUSG00000035168 ENSMUST00000147650 Tanc1 protein_coding Interval_108649 chr3 129781206 129783001 + 0 NA Intergenic Intergenic 18418 ENSMUSG00000093865.7 ENSMUSG00000093865 ENSMUST00000188978 Lrit3 protein_coding Interval_168503 chr9 82713961 82714164 + 0 NA Intergenic Intergenic -115478 ENSMUSG00000032251.12 ENSMUSG00000032251 ENSMUST00000034783 Irak1bp1 protein_coding Interval_122406 chr5 22280720 22281097 + 0 NA TTS (ENSMUSG00000089910.1) processed_pseudogene-TTS (ENSMUSG00000089910.1) 674 ENSMUSG00000089910.1 ENSMUSG00000089910 ENSMUST00000159629 Gm16113 processed_pseudogene Interval_147560 chr7 68275456 68276792 + 0 NA exon (ENSMUSG00000074071.11, exon 1 of 1) protein_coding-intron (ENSMUSG00000074071.11, intron 1 of 8) 129 ENSMUSG00000074071.11 ENSMUSG00000074071 ENSMUST00000153458 Fam169b protein_coding Interval_106210 chr3 94621930 94623237 + 0 NA TTS (ENSMUSG00000005968.14) protein_coding-TTS (ENSMUSG00000005968.14) -17799 ENSMUSG00000062896.3 ENSMUSG00000062896 ENSMUST00000119898 Rpl31-ps11 processed_pseudogene Interval_29747 chr11 86544064 86545396 + 0 NA promoter-TSS (ENSMUSG00000020513.15) protein_coding-promoter-TSS (ENSMUSG00000020513.15) 75 ENSMUSG00000020516.15 ENSMUSG00000020516 ENSMUST00000138810 Rps6kb1 protein_coding Interval_114611 chr4 83211732 83212188 + 0 NA Intergenic Intergenic 17972 ENSMUSG00000083245.1 ENSMUSG00000083245 ENSMUST00000117732 Gm11185 processed_pseudogene Interval_24467 chr11 33485567 33485898 + 0 NA TTS (ENSMUSG00000040594.19) protein_coding-TTS (ENSMUSG00000040594.19) -33218 ENSMUSG00000040594.19 ENSMUSG00000040594 ENSMUST00000147751 Ranbp17 protein_coding Interval_43062 chr13 23550964 23552213 + 0 NA promoter-TSS (ENSMUSG00000069274.3) protein_coding-promoter-TSS (ENSMUSG00000069274.3) 60 ENSMUSG00000069274.3 ENSMUSG00000069274 ENSMUST00000102971 H4c6 protein_coding Interval_96573 chr2 125828028 125828589 + 0 NA Intergenic Intergenic 30755 ENSMUSG00000027206.13 ENSMUSG00000027206 ENSMUST00000152683 Cops2 protein_coding Interval_91691 chr2 47860471 47860675 + 0 NA Intergenic Intergenic -279573 ENSMUSG00000082278.1 ENSMUSG00000082278 ENSMUST00000122057 Gm13471 processed_pseudogene Interval_107844 chr3 116113586 116114184 + 0 NA intron (ENSMUSG00000027962.14, intron 8 of 8) protein_coding-intron (ENSMUSG00000027962.14, intron 8 of 8) 6830 ENSMUSG00000027962.14 ENSMUSG00000027962 ENSMUST00000196309 Vcam1 protein_coding Interval_26058 chr11 53809876 53810451 + 0 NA intron (ENSMUSG00000081769.9, intron 3 of 3) protein_coding-intron (ENSMUSG00000081769.9, intron 3 of 3) -36968 ENSMUSG00000091191.2 ENSMUSG00000091191 ENSMUST00000170390 Gm17334 TEC Interval_93929 chr2 79499048 79499591 + 0 NA Intergenic Intergenic -42568 ENSMUSG00000034701.9 ENSMUSG00000034701 ENSMUST00000041099 Neurod1 protein_coding Interval_112424 chr4 41175719 41175998 + 0 NA intron (ENSMUSG00000036241.3, intron 2 of 4) protein_coding-intron (ENSMUSG00000036241.3, intron 2 of 4) -3014 ENSMUSG00000087730.1 ENSMUSG00000087730 ENSMUST00000157105 Gm24650 snRNA Interval_20809 chr10 121160282 121160530 + 0 NA exon (ENSMUSG00000112431.1, exon 1 of 1) TEC-exon (ENSMUSG00000112431.1, exon 1 of 1) 1123 ENSMUSG00000112431.1 ENSMUSG00000112431 ENSMUST00000218151 Gm10741 TEC Interval_37382 chr12 66269467 66269877 + 0 NA exon (ENSMUSG00000113531.1, exon 1 of 1) processed_pseudogene-exon (ENSMUSG00000113531.1, exon 1 of 1) 407 ENSMUSG00000113531.1 ENSMUSG00000113531 ENSMUST00000222565 Gm2915 processed_pseudogene Interval_161564 chr8 121236687 121237520 + 0 NA intron (ENSMUSG00000092329.1, intron 1 of 15) protein_coding-intron (ENSMUSG00000092329.1, intron 1 of 15) -33501 ENSMUSG00000097097.2 ENSMUSG00000097097 ENSMUST00000212635 5033426O07Rik lincRNA Interval_11523 chr1 182461609 182462095 + 0 NA TTS (ENSMUSG00000026510.10) protein_coding-TTS (ENSMUSG00000026510.10) 19642 ENSMUSG00000026509.15 ENSMUSG00000026509 ENSMUST00000192483 Capn2 protein_coding Interval_108270 chr3 123168545 123169657 + 0 NA intron (ENSMUSG00000050315.14, intron 1 of 3) protein_coding-intron (ENSMUSG00000050315.14, intron 1 of 4) -4629 ENSMUSG00000105562.1 ENSMUSG00000105562 ENSMUST00000197747 Gm43287 TEC Interval_150039 chr7 105310983 105311314 + 0 NA promoter-TSS (ENSMUSG00000073907.3) protein_coding-promoter-TSS (ENSMUSG00000073907.3) -17 ENSMUSG00000073907.3 ENSMUSG00000073907 ENSMUST00000098153 Olfr689 protein_coding Interval_102786 chr3 31015863 31018179 + 0 NA intron (ENSMUSG00000037643.14, intron 1 of 7) protein_coding-intron (ENSMUSG00000037643.14, intron 1 of 17) -21429 ENSMUSG00000037643.14 ENSMUSG00000037643 ENSMUST00000130706 Prkci protein_coding Interval_45042 chr13 51690299 51690893 + 0 NA intron (ENSMUSG00000021451.16, intron 3 of 4) protein_coding-intron (ENSMUSG00000021451.16, intron 3 of 4) 38799 ENSMUSG00000035139.14 ENSMUSG00000035139 ENSMUST00000153877 Secisbp2 protein_coding Interval_82657 chr18 75695062 75698035 + 0 NA intron (ENSMUSG00000052928.9, intron 1 of 11) protein_coding-intron (ENSMUSG00000052928.9, intron 1 of 11) -59275 ENSMUSG00000052928.9 ENSMUSG00000052928 ENSMUST00000235147 Ctif protein_coding Interval_23404 chr11 22268863 22269306 + 0 NA intron (ENSMUSG00000042302.14, intron 2 of 4) protein_coding-intron (ENSMUSG00000042302.14, intron 1 of 23) 17711 ENSMUSG00000042302.14 ENSMUSG00000042302 ENSMUST00000137594 Ehbp1 protein_coding Interval_77472 chr17 89440383 89440740 + 0 NA Intergenic Intergenic 61320 ENSMUSG00000117524.1 ENSMUSG00000117524 ENSMUST00000234513 Gm4719 lincRNA Interval_96593 chr2 126014755 126015977 + 0 NA intron (ENSMUSG00000027209.17, intron 10 of 15) protein_coding-intron (ENSMUSG00000027209.17, intron 11 of 16) -19292 ENSMUSG00000027208.14 ENSMUSG00000027208 ENSMUST00000110442 Fgf7 protein_coding Interval_61510 chr15 82065176 82066133 + 0 NA exon (ENSMUSG00000075524.3, exon 2 of 2) protein_coding-exon (ENSMUSG00000075524.3, exon 2 of 2) -4342 ENSMUSG00000068117.10 ENSMUSG00000068117 ENSMUST00000186125 Mei1 protein_coding Interval_13116 chr10 11555128 11556160 + 0 NA Intergenic Intergenic -24442 ENSMUSG00000112151.1 ENSMUSG00000112151 ENSMUST00000218979 Gm48680 lincRNA Interval_79994 chr18 36529641 36530221 + 0 NA exon (ENSMUSG00000024485.16, exon 5 of 20) protein_coding-exon (ENSMUSG00000024485.16, exon 5 of 20) 1780 ENSMUSG00000024485.16 ENSMUSG00000024485 ENSMUST00000235382 Slc4a9 protein_coding Interval_162840 chr9 10213431 10213805 + 0 NA intron (ENSMUSG00000039488.15, intron 3 of 24) protein_coding-intron (ENSMUSG00000039488.15, intron 1 of 22) 76969 ENSMUSG00000093959.1 ENSMUSG00000093959 ENSMUST00000178287 Gm24496 miRNA Interval_32693 chr11 109697316 109698913 + 0 NA intron (ENSMUSG00000020614.13, intron 1 of 11) protein_coding-intron (ENSMUSG00000020614.13, intron 1 of 10) 24165 ENSMUSG00000020614.13 ENSMUSG00000020614 ENSMUST00000144972 Fam20a protein_coding Interval_148928 chr7 90141130 90141389 + 0 NA intron (ENSMUSG00000039361.11, intron 1 of 3) protein_coding-intron (ENSMUSG00000039361.11, intron 1 of 20) -4689 ENSMUSG00000109498.1 ENSMUSG00000109498 ENSMUST00000207029 Gm45222 TEC Interval_142363 chr6 140924560 140925206 + 0 NA Intergenic Intergenic -30752 ENSMUSG00000107638.2 ENSMUSG00000107638 ENSMUST00000204355 Gm30524 lincRNA Interval_16028 chr10 60203700 60204276 + 0 NA intron (ENSMUSG00000057337.13, intron 1 of 3) protein_coding-intron (ENSMUSG00000057337.13, intron 1 of 3) 7263 ENSMUSG00000077090.1 ENSMUSG00000077090 ENSMUST00000103902 Gm22117 miRNA Interval_4839 chr1 80166343 80166569 + 0 NA Intergenic Intergenic -17655 ENSMUSG00000102518.1 ENSMUSG00000102518 ENSMUST00000195479 Gm38339 TEC Interval_104755 chr3 70636551 70636748 + 0 NA Intergenic Intergenic -52443 ENSMUSG00000074877.3 ENSMUSG00000074877 ENSMUST00000099459 Gm10780 pseudogene Interval_27713 chr11 69604740 69606380 + 0 NA exon (ENSMUSG00000041329.13, exon 1 of 7) protein_coding-exon (ENSMUSG00000041329.13, exon 1 of 7) -2398 ENSMUSG00000041329.13 ENSMUSG00000041329 ENSMUST00000153198 Atp1b2 protein_coding Interval_51974 chr14 34362953 34365291 + 0 NA Intergenic Intergenic -8689 ENSMUSG00000043681.5 ENSMUSG00000043681 ENSMUST00000052126 Fam25c protein_coding Interval_15636 chr10 52520998 52521372 + 0 NA Intergenic Intergenic -1837 ENSMUSG00000112149.1 ENSMUSG00000112149 ENSMUST00000219080 Gm47611 processed_pseudogene Interval_122920 chr5 27354675 27355445 + 0 NA intron (ENSMUSG00000061576.15, intron 1 of 25) protein_coding-intron (ENSMUSG00000061576.15, intron 1 of 25) 136875 ENSMUSG00000106537.1 ENSMUSG00000106537 ENSMUST00000200263 Gm43502 TEC Interval_95248 chr2 105182007 105183193 + 0 NA Intergenic Intergenic 19792 ENSMUSG00000016458.15 ENSMUSG00000016458 ENSMUST00000153944 Wt1 protein_coding Interval_52584 chr14 47687228 47687556 + 0 NA intron (ENSMUSG00000021843.17, intron 9 of 38) protein_coding-intron (ENSMUSG00000021843.17, intron 9 of 41) 23605 ENSMUSG00000021843.17 ENSMUSG00000021843 ENSMUST00000190857 Ktn1 protein_coding Interval_141920 chr6 135369067 135369887 + 0 NA intron (ENSMUSG00000030208.15, intron 1 of 4) protein_coding-intron (ENSMUSG00000030208.15, intron 1 of 4) 6932 ENSMUSG00000030208.15 ENSMUSG00000030208 ENSMUST00000111907 Emp1 protein_coding Interval_84720 chr19 15941471 15941771 + 0 NA intron (ENSMUSG00000024640.9, intron 1 of 5) protein_coding-intron (ENSMUSG00000024640.9, intron 1 of 5) -1989 ENSMUSG00000090147.1 ENSMUSG00000090147 ENSMUST00000159873 Gm3329 processed_pseudogene Interval_69235 chr16 91587766 91588507 + 0 NA intron (ENSMUSG00000022964.14, intron 1 of 5) protein_coding-intron (ENSMUSG00000022964.14, intron 1 of 6) 9664 ENSMUSG00000022964.14 ENSMUSG00000022964 ENSMUST00000141885 Tmem50b protein_coding Interval_119803 chr4 140085794 140085998 + 0 NA intron (ENSMUSG00000040972.8, intron 3 of 9) protein_coding-intron (ENSMUSG00000040972.8, intron 3 of 9) -45981 ENSMUSG00000085968.1 ENSMUSG00000085968 ENSMUST00000135858 Gm13027 antisense Interval_142886 chr6 146701709 146702949 + 0 NA Intergenic Intergenic -22983 ENSMUSG00000001630.13 ENSMUSG00000001630 ENSMUST00000203318 Stk38l protein_coding Interval_97236 chr2 132498498 132498874 + 0 NA intron (ENSMUSG00000086379.7, intron 2 of 2) antisense-intron (ENSMUSG00000086379.7, intron 2 of 2) 2462 ENSMUSG00000086250.1 ENSMUSG00000086250 ENSMUST00000134264 Gm14095 lincRNA Interval_14846 chr10 40450888 40452554 + 0 NA intron (ENSMUSG00000038481.13, intron 4 of 11) protein_coding-intron (ENSMUSG00000038481.13, intron 4 of 12) -97171 ENSMUSG00000111251.1 ENSMUSG00000111251 ENSMUST00000214826 Gm18671 processed_pseudogene Interval_42452 chr13 13677549 13678689 + 0 NA exon (ENSMUSG00000019726.12, exon 23 of 53) protein_coding-exon (ENSMUSG00000019726.12, exon 23 of 53) -5972 ENSMUSG00000019726.12 ENSMUSG00000019726 ENSMUST00000221587 Lyst protein_coding Interval_161233 chr8 118951899 118952203 + 0 NA intron (ENSMUSG00000031841.19, intron 5 of 7) protein_coding-intron (ENSMUSG00000031841.19, intron 5 of 13) -199414 ENSMUSG00000031841.19 ENSMUSG00000031841 ENSMUST00000151842 Cdh13 protein_coding Interval_125411 chr5 66793148 66793360 + 0 NA intron (ENSMUSG00000037736.20, intron 1 of 31) protein_coding-intron (ENSMUSG00000037736.20, intron 1 of 25) 74884 ENSMUSG00000107284.1 ENSMUSG00000107284 ENSMUST00000202958 Gm43280 TEC Interval_26415 chr11 57731954 57734051 + 0 NA intron (ENSMUSG00000020520.14, intron 3 of 11) protein_coding-intron (ENSMUSG00000020520.14, intron 3 of 11) -8298 ENSMUSG00000077155.1 ENSMUSG00000077155 ENSMUST00000103967 Gm24582 snRNA Interval_84463 chr19 11285307 11285618 + 0 NA intron (ENSMUSG00000097091.1, intron 1 of 2) antisense-intron (ENSMUSG00000097091.1, intron 1 of 2) -6019 ENSMUSG00000054523.13 ENSMUSG00000054523 ENSMUST00000188267 Ms4a5 protein_coding Interval_139560 chr6 101073489 101073704 + 0 NA intron (ENSMUSG00000107887.1, intron 2 of 2) antisense-intron (ENSMUSG00000107427.1, intron 1 of 3) 14425 ENSMUSG00000107427.1 ENSMUSG00000107427 ENSMUST00000203474 Gm43948 antisense Interval_65730 chr16 26174243 26174461 + 0 NA Intergenic Intergenic -133084 ENSMUSG00000090203.2 ENSMUSG00000090203 ENSMUST00000159040 AU015336 sense_intronic Interval_125836 chr5 74843412 74843670 + 0 NA Intergenic Intergenic -39794 ENSMUSG00000106806.1 ENSMUSG00000106806 ENSMUST00000202480 Gm17906 processed_pseudogene Interval_114176 chr4 65822868 65823698 + 0 NA intron (ENSMUSG00000028373.16, intron 9 of 21) protein_coding-intron (ENSMUSG00000028373.16, intron 10 of 22) 218034 ENSMUSG00000051675.13 ENSMUSG00000051675 ENSMUST00000156922 Trim32 protein_coding Interval_71883 chr17 26706123 26707116 + 0 NA Intergenic Intergenic 30462 ENSMUSG00000015575.15 ENSMUSG00000015575 ENSMUST00000167352 Atp6v0e protein_coding Interval_56497 chr14 119217370 119218734 + 0 NA intron (ENSMUSG00000053465.6, intron 1 of 1) protein_coding-intron (ENSMUSG00000053465.6, intron 1 of 1) -60372 ENSMUSG00000115684.1 ENSMUSG00000115684 ENSMUST00000227446 Gm6087 processed_pseudogene Interval_55492 chr14 88802391 88802700 + 0 NA Intergenic Intergenic 166512 ENSMUSG00000115623.1 ENSMUSG00000115623 ENSMUST00000227074 Gm41225 lincRNA Interval_34355 chr12 3577904 3578872 + 0 NA intron (ENSMUSG00000071454.13, intron 1 of 18) protein_coding-intron (ENSMUSG00000071454.13, intron 1 of 18) 5918 ENSMUSG00000071454.13 ENSMUSG00000071454 ENSMUST00000174293 Dtnb protein_coding Interval_22571 chr11 11854135 11856182 + 0 NA intron (ENSMUSG00000020182.16, intron 6 of 14) protein_coding-intron (ENSMUSG00000020182.16, intron 6 of 14) -12965 ENSMUSG00000086391.1 ENSMUSG00000086391 ENSMUST00000151032 1700042O10Rik antisense Interval_143200 chr7 4452729 4454034 + 0 NA intron (ENSMUSG00000091177.2, intron 1 of 1) antisense-intron (ENSMUSG00000091177.2, intron 1 of 1) -7334 ENSMUSG00000006154.13 ENSMUSG00000006154 ENSMUST00000164987 Eps8l1 protein_coding Interval_68526 chr16 78397878 78399865 + 0 NA Intergenic Intergenic 24988 ENSMUSG00000064862.1 ENSMUSG00000064862 ENSMUST00000082928 Gm25038 snoRNA Interval_2406 chr1 39029053 39029306 + 0 NA Intergenic Intergenic 28458 ENSMUSG00000104188.1 ENSMUSG00000104188 ENSMUST00000195476 Gm37821 lincRNA Interval_116509 chr4 114900434 114903093 + 0 NA intron (ENSMUSG00000085323.1, intron 1 of 1) antisense-intron (ENSMUSG00000085323.1, intron 1 of 1) 1096 ENSMUSG00000085323.1 ENSMUSG00000085323 ENSMUST00000155499 9130410C08Rik antisense Interval_53308 chr14 55936696 55937090 + 0 NA intron (ENSMUSG00000114978.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000114978.1, intron 1 of 1) 702 ENSMUSG00000114978.1 ENSMUSG00000114978 ENSMUST00000227704 Gm48925 lincRNA Interval_141990 chr6 136407019 136408585 + 0 NA intron (ENSMUSG00000045291.8, intron 1 of 1) protein_coding-intron (ENSMUSG00000045291.8, intron 1 of 1) 7767 ENSMUSG00000045291.8 ENSMUSG00000045291 ENSMUST00000203392 E330021D16Rik protein_coding Interval_156864 chr8 61295077 61295990 + 0 NA intron (ENSMUSG00000031642.9, intron 2 of 10) protein_coding-intron (ENSMUSG00000031642.9, intron 2 of 11) -6661 ENSMUSG00000099419.1 ENSMUSG00000099419 ENSMUST00000188654 1700001D01Rik antisense Interval_80410 chr18 41942312 41942886 + 0 NA intron (ENSMUSG00000056671.7, intron 1 of 1) protein_coding-intron (ENSMUSG00000056671.7, intron 1 of 5) 8618 ENSMUSG00000056671.7 ENSMUSG00000056671 ENSMUST00000236542 Prelid2 protein_coding Interval_118073 chr4 128785666 128786685 + 0 NA exon (ENSMUSG00000028799.15, exon 5 of 8) protein_coding-exon (ENSMUSG00000028799.15, exon 5 of 8) 19870 ENSMUSG00000028799.15 ENSMUSG00000028799 ENSMUST00000138371 Zfp362 protein_coding Interval_15687 chr10 53563683 53563967 + 0 NA intron (ENSMUSG00000058298.10, intron 8 of 13) protein_coding-intron (ENSMUSG00000058298.10, intron 8 of 13) -5844 ENSMUSG00000112530.1 ENSMUSG00000112530 ENSMUST00000218795 Gm47738 antisense Interval_171300 chr9 116218699 116219290 + 0 NA exon (ENSMUSG00000111324.1, exon 1 of 4) lincRNA-exon (ENSMUSG00000111324.1, exon 1 of 4) 192 ENSMUSG00000111324.1 ENSMUSG00000111324 ENSMUST00000217302 Gm31410 lincRNA Interval_115750 chr4 103313453 103314433 + 0 NA intron (ENSMUSG00000035069.3, intron 1 of 8) protein_coding-intron (ENSMUSG00000035069.3, intron 1 of 8) -10541 ENSMUSG00000035069.3 ENSMUSG00000035069 ENSMUST00000133178 Oma1 protein_coding Interval_139627 chr6 103753666 103754163 + 0 NA Intergenic Intergenic 56164 ENSMUSG00000030077.11 ENSMUSG00000030077 ENSMUST00000205098 Chl1 protein_coding Interval_16539 chr10 63461757 63462224 + 0 NA intron (ENSMUSG00000060843.11, intron 1 of 17) protein_coding-intron (ENSMUSG00000060843.11, intron 1 of 17) -40201 ENSMUSG00000048185.5 ENSMUSG00000048185 ENSMUST00000054760 Gm7075 protein_coding Interval_26705 chr11 59859384 59861145 + 0 NA intron (ENSMUSG00000032615.14, intron 2 of 4) protein_coding-intron (ENSMUSG00000032615.14, intron 2 of 4) 20817 ENSMUSG00000032615.14 ENSMUSG00000032615 ENSMUST00000137695 Nt5m protein_coding Interval_31316 chr11 99656870 99658601 + 0 NA TTS (ENSMUSG00000069718.4) protein_coding-TTS (ENSMUSG00000069718.4) 1225 ENSMUSG00000069718.4 ENSMUSG00000069718 ENSMUST00000092695 Gm11563 protein_coding Interval_148254 chr7 80110688 80111619 + 0 NA exon (ENSMUSG00000108494.1, exon 1 of 1) TEC-exon (ENSMUSG00000108494.1, exon 1 of 1) 1481 ENSMUSG00000108494.1 ENSMUSG00000108494 ENSMUST00000206384 Gm45203 TEC Interval_21498 chr10 128933314 128934500 + 0 NA promoter-TSS (ENSMUSG00000025348.9) protein_coding-promoter-TSS (ENSMUSG00000025348.9) -10383 ENSMUSG00000090247.7 ENSMUSG00000090247 ENSMUST00000143628 Bloc1s1 protein_coding Interval_57672 chr15 14697867 14698321 + 0 NA Intergenic Intergenic 37190 ENSMUSG00000092919.2 ENSMUSG00000092919 ENSMUST00000175178 Gm24080 miRNA Interval_114153 chr4 65245063 65245836 + 0 NA intron (ENSMUSG00000028370.7, intron 9 of 21) protein_coding-intron (ENSMUSG00000028370.7, intron 9 of 21) 121275 ENSMUSG00000028370.7 ENSMUSG00000028370 ENSMUST00000084501 Pappa protein_coding Interval_58164 chr15 30139217 30140212 + 0 NA Intergenic Intergenic -87158 ENSMUSG00000065726.1 ENSMUSG00000065726 ENSMUST00000083792 Gm26163 snoRNA Interval_131378 chr5 136802902 136803153 + 0 NA intron (ENSMUSG00000004415.15, intron 3 of 3) protein_coding-intron (ENSMUSG00000004415.15, intron 3 of 12) 35282 ENSMUSG00000004415.15 ENSMUSG00000004415 ENSMUST00000140245 Col26a1 protein_coding Interval_52339 chr14 45256877 45257169 + 0 NA intron (ENSMUSG00000049092.11, intron 3 of 6) protein_coding-intron (ENSMUSG00000049092.11, intron 3 of 6) -16227 ENSMUSG00000115373.1 ENSMUSG00000115373 ENSMUST00000227166 Gm49194 sense_intronic Interval_99098 chr2 157182642 157183006 + 0 NA intron (ENSMUSG00000027641.13, intron 11 of 15) protein_coding-intron (ENSMUSG00000027641.13, intron 11 of 21) 14004 ENSMUSG00000084113.1 ENSMUSG00000084113 ENSMUST00000121195 Gm14277 processed_pseudogene Interval_107140 chr3 103849611 103851207 + 0 NA intron (ENSMUSG00000044165.12, intron 1 of 1) protein_coding-intron (ENSMUSG00000044165.12, intron 3 of 3) 3585 ENSMUSG00000044165.12 ENSMUSG00000044165 ENSMUST00000196184 Bcl2l15 protein_coding Interval_90251 chr2 29321840 29322138 + 0 NA Intergenic Intergenic -68996 ENSMUSG00000079499.9 ENSMUSG00000079499 ENSMUST00000028141 6530402F18Rik processed_transcript Interval_73289 chr17 35993666 35994800 + 0 NA promoter-TSS (ENSMUSG00000092368.1) antisense-promoter-TSS (ENSMUSG00000092368.1) -220 ENSMUSG00000092368.1 ENSMUSG00000092368 ENSMUST00000173900 A930015D03Rik antisense Interval_73151 chr17 35115263 35116108 + 0 NA promoter-TSS (ENSMUSG00000043807.6) protein_coding-promoter-TSS (ENSMUSG00000043807.6) -257 ENSMUSG00000043807.6 ENSMUSG00000043807 ENSMUST00000062657 Ly6g5b protein_coding Interval_118757 chr4 133567042 133567869 + 0 NA Intergenic Intergenic -8506 ENSMUSG00000093886.1 ENSMUSG00000093886 ENSMUST00000175076 Gm23158 miRNA Interval_65522 chr16 23070399 23071358 + 0 NA intron (ENSMUSG00000022875.18, intron 5 of 10) protein_coding-intron (ENSMUSG00000022875.18, intron 5 of 9) 13013 ENSMUSG00000022875.18 ENSMUSG00000022875 ENSMUST00000089902 Kng1 protein_coding Interval_57987 chr15 25862216 25862726 + 0 NA intron (ENSMUSG00000022270.16, intron 1 of 8) protein_coding-intron (ENSMUSG00000022270.16, intron 1 of 8) -21860 ENSMUSG00000115593.1 ENSMUSG00000115593 ENSMUST00000228649 Gm4824 processed_pseudogene Interval_130684 chr5 129740244 129741615 + 0 NA intron (ENSMUSG00000029432.12, intron 3 of 7) protein_coding-intron (ENSMUSG00000029432.12, intron 3 of 9) 12757 ENSMUSG00000086916.2 ENSMUSG00000086916 ENSMUST00000199631 Gm15903 sense_intronic Interval_14084 chr10 26700693 26700965 + 0 NA intron (ENSMUSG00000111950.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000111950.1, intron 1 of 1) 5255 ENSMUSG00000111950.1 ENSMUSG00000111950 ENSMUST00000218733 Gm48893 lincRNA Interval_171614 chr9 119558047 119558739 + 0 NA intron (ENSMUSG00000032511.17, intron 3 of 27) protein_coding-intron (ENSMUSG00000032511.17, intron 2 of 26) 5110 ENSMUSG00000032511.17 ENSMUSG00000032511 ENSMUST00000138934 Scn5a protein_coding Interval_160045 chr8 105995780 105996599 + 0 NA exon (ENSMUSG00000115067.1, exon 1 of 12) protein_coding-exon (ENSMUSG00000115067.1, exon 1 of 12) 205 ENSMUSG00000115067.1 ENSMUSG00000115067 ENSMUST00000227363 Dpep2 protein_coding Interval_131789 chr5 139889842 139890625 + 0 NA Intergenic Intergenic -5576 ENSMUSG00000105335.1 ENSMUSG00000105335 ENSMUST00000196396 Gm42423 lincRNA Interval_151976 chr7 127914054 127914282 + 0 NA promoter-TSS (ENSMUSG00000030801.10) protein_coding-promoter-TSS (ENSMUSG00000030801.10) -5620 ENSMUSG00000030801.10 ENSMUSG00000030801 ENSMUST00000206364 Kat8 protein_coding Interval_81760 chr18 64483755 64484214 + 0 NA intron (ENSMUSG00000024588.9, intron 1 of 10) protein_coding-intron (ENSMUSG00000024588.9, intron 1 of 9) 4957 ENSMUSG00000024588.9 ENSMUSG00000024588 ENSMUST00000235843 Fech protein_coding Interval_134083 chr6 19020215 19020405 + 0 NA Intergenic Intergenic -26527 ENSMUSG00000084650.1 ENSMUSG00000084650 ENSMUST00000122701 Gm22718 misc_RNA Interval_170662 chr9 109952467 109953253 + 0 NA intron (ENSMUSG00000032479.15, intron 1 of 3) protein_coding-intron (ENSMUSG00000032479.15, intron 1 of 18) -17573 ENSMUSG00000106208.1 ENSMUSG00000106208 ENSMUST00000200117 Gm4734 processed_pseudogene Interval_130111 chr5 124352008 124354906 + 0 NA intron (ENSMUSG00000029394.11, intron 1 of 3) protein_coding-intron (ENSMUSG00000029394.11, intron 1 of 3) 9625 ENSMUSG00000029394.11 ENSMUSG00000029394 ENSMUST00000196910 Cdk2ap1 protein_coding Interval_129883 chr5 122909048 122909694 + 0 NA promoter-TSS (ENSMUSG00000105979.1) TEC-promoter-TSS (ENSMUSG00000105979.1) -971 ENSMUSG00000105979.1 ENSMUSG00000105979 ENSMUST00000196235 Gm43411 TEC Interval_77962 chr18 6183702 6184446 + 0 NA Intergenic Intergenic -29839 ENSMUSG00000091165.1 ENSMUSG00000091165 ENSMUST00000168187 Gm17036 antisense Interval_20135 chr10 115195335 115196445 + 0 NA Intergenic Intergenic -20332 ENSMUSG00000006764.8 ENSMUSG00000006764 ENSMUST00000155794 Tph2 protein_coding Interval_15101 chr10 42579573 42580562 + 0 NA intron (ENSMUSG00000019803.11, intron 1 of 8) protein_coding-intron (ENSMUSG00000019803.11, intron 1 of 8) 707 ENSMUSG00000019803.11 ENSMUSG00000019803 ENSMUST00000143891 Nr2e1 protein_coding Interval_141009 chr6 124346541 124346931 + 0 NA TTS (ENSMUSG00000079346.4) lincRNA-TTS (ENSMUSG00000079346.4) 10333 ENSMUSG00000079346.4 ENSMUSG00000079346 ENSMUST00000203817 1700013D24Rik lincRNA Interval_138408 chr6 87946707 87948498 + 0 NA TTS (ENSMUSG00000068689.8) processed_pseudogene-TTS (ENSMUSG00000068689.8) 1275 ENSMUSG00000068689.8 ENSMUSG00000068689 ENSMUST00000161787 Rps19-ps9 processed_pseudogene Interval_101764 chr3 9462888 9463270 + 0 NA intron (ENSMUSG00000040209.12, intron 3 of 9) protein_coding-intron (ENSMUSG00000040209.12, intron 4 of 8) -33089 ENSMUSG00000103485.1 ENSMUSG00000103485 ENSMUST00000192900 Gm38001 TEC Interval_152706 chr7 136640344 136640804 + 0 NA Intergenic Intergenic -16635 ENSMUSG00000109894.1 ENSMUSG00000109894 ENSMUST00000210286 Gm5904 processed_pseudogene Interval_36401 chr12 43696000 43696822 + 0 NA Intergenic Intergenic -46626 ENSMUSG00000065004.1 ENSMUSG00000065004 ENSMUST00000083070 Gm26326 snoRNA Interval_169383 chr9 96824017 96826078 + 0 NA TTS (ENSMUSG00000043587.15) protein_coding-TTS (ENSMUSG00000043587.15) -10713 ENSMUSG00000100922.1 ENSMUSG00000100922 ENSMUST00000186517 Gm8520 processed_pseudogene Interval_130083 chr5 124150917 124151172 + 0 NA intron (ENSMUSG00000029406.15, intron 3 of 24) protein_coding-intron (ENSMUSG00000029406.15, intron 2 of 23) 33733 ENSMUSG00000029404.15 ENSMUSG00000029404 ENSMUST00000196401 Arl6ip4 protein_coding Interval_75887 chr17 72720396 72721690 + 0 NA Intergenic Intergenic -20598 ENSMUSG00000098193.1 ENSMUSG00000098193 ENSMUST00000183172 Gm26963 processed_pseudogene Interval_50312 chr14 11796793 11797064 + 0 NA intron (ENSMUSG00000021745.14, intron 2 of 3) protein_coding-intron (ENSMUSG00000021745.14, intron 2 of 29) 28985 ENSMUSG00000114310.1 ENSMUSG00000114310 ENSMUST00000225152 Gm48602 TEC Interval_156755 chr8 57939387 57940234 + 0 NA intron (ENSMUSG00000096914.3, intron 7 of 12) protein_coding-intron (ENSMUSG00000096914.3, intron 2 of 7) 48067 ENSMUSG00000109753.1 ENSMUSG00000109753 ENSMUST00000210669 Gm45633 TEC Interval_28055 chr11 72534872 72535761 + 0 NA intron (ENSMUSG00000020798.14, intron 7 of 11) protein_coding-intron (ENSMUSG00000020798.14, intron 6 of 10) -32873 ENSMUSG00000020798.14 ENSMUSG00000020798 ENSMUST00000021154 Spns3 protein_coding Interval_49997 chr13 119436448 119436672 + 0 NA intron (ENSMUSG00000025451.15, intron 2 of 5) protein_coding-intron (ENSMUSG00000025451.15, intron 2 of 10) 7402 ENSMUSG00000025451.15 ENSMUSG00000025451 ENSMUST00000173339 Paip1 protein_coding Interval_268 KZ289068.1 422657 427147 + 0 NA NA NA NA NA Interval_83519 chr18 88770074 88770935 + 0 NA intron (ENSMUSG00000056153.15, intron 3 of 7) protein_coding-intron (ENSMUSG00000056153.15, intron 3 of 7) -56546 ENSMUSG00000117887.1 ENSMUSG00000117887 ENSMUST00000236521 Gm50404 processed_pseudogene Interval_162081 chr8 124959970 124960941 + 0 NA Intergenic Intergenic -11131 ENSMUSG00000031987.6 ENSMUSG00000031987 ENSMUST00000034469 Egln1 protein_coding Interval_41897 chr13 4000908 4002118 + 0 NA Intergenic Intergenic -21656 ENSMUSG00000113667.1 ENSMUSG00000113667 ENSMUST00000221030 Gm47853 processed_pseudogene Interval_109489 chr3 142887116 142887490 + 0 NA intron (ENSMUSG00000097858.2, intron 1 of 1) lincRNA-intron (ENSMUSG00000097858.2, intron 1 of 1) 4808 ENSMUSG00000097858.2 ENSMUSG00000097858 ENSMUST00000181882 9530052C20Rik lincRNA Interval_170128 chr9 105144144 105145402 + 0 NA intron (ENSMUSG00000032566.4, intron 1 of 1) protein_coding-intron (ENSMUSG00000032566.4, intron 1 of 2) 303 ENSMUSG00000032566.4 ENSMUSG00000032566 ENSMUST00000190661 Nudt16l2 protein_coding Interval_8049 chr1 135422406 135422649 + 0 NA intron (ENSMUSG00000041879.13, intron 1 of 24) protein_coding-intron (ENSMUSG00000041879.13, intron 1 of 23) -8341 ENSMUSG00000100620.1 ENSMUSG00000100620 ENSMUST00000187450 Gm28277 sense_intronic Interval_81035 chr18 53214525 53215884 + 0 NA intron (ENSMUSG00000034484.8, intron 11 of 14) protein_coding-intron (ENSMUSG00000034484.8, intron 11 of 14) 6682 ENSMUSG00000118240.1 ENSMUSG00000118240 ENSMUST00000235759 Gm1859 processed_pseudogene Interval_88015 chr19 57916517 57916712 + 0 NA intron (ENSMUSG00000054843.9, intron 26 of 28) protein_coding-intron (ENSMUSG00000054843.9, intron 26 of 28) -134553 ENSMUSG00000093757.1 ENSMUSG00000093757 ENSMUST00000176631 Mir5623 miRNA Interval_152652 chr7 135740311 135741043 + 0 NA Intergenic Intergenic -1999 ENSMUSG00000109831.1 ENSMUSG00000109831 ENSMUST00000209706 Gm36431 lincRNA Interval_139718 chr6 108070741 108071620 + 0 NA intron (ENSMUSG00000034639.7, intron 1 of 1) protein_coding-intron (ENSMUSG00000034639.7, intron 1 of 1) 6118 ENSMUSG00000034639.7 ENSMUSG00000034639 ENSMUST00000138140 Setmar protein_coding Interval_152343 chr7 132059945 132060337 + 0 NA promoter-TSS (ENSMUSG00000030862.13) protein_coding-promoter-TSS (ENSMUSG00000030862.13) 1500 ENSMUSG00000084630.1 ENSMUSG00000084630 ENSMUST00000122681 n-R5s159 rRNA Interval_109804 chr3 147507937 147508146 + 0 NA Intergenic Intergenic 79152 ENSMUSG00000102569.1 ENSMUSG00000102569 ENSMUST00000195873 Gm37041 lincRNA Interval_7129 chr1 126829972 126830827 + 0 NA promoter-TSS (ENSMUSG00000049690.15) protein_coding-promoter-TSS (ENSMUSG00000049690.15) 46216 ENSMUSG00000101600.1 ENSMUSG00000101600 ENSMUST00000188266 4930599A14Rik lincRNA Interval_118059 chr4 128682311 128683048 + 0 NA intron (ENSMUSG00000028796.17, intron 1 of 6) protein_coding-intron (ENSMUSG00000028796.17, intron 1 of 14) -27485 ENSMUSG00000028796.17 ENSMUSG00000028796 ENSMUST00000134421 Phc2 protein_coding Interval_81499 chr18 61189554 61190455 + 0 NA Intergenic Intergenic 21353 ENSMUSG00000034320.14 ENSMUSG00000034320 ENSMUST00000181997 Slc26a2 protein_coding Interval_45736 chr13 57521017 57521569 + 0 NA intron (ENSMUSG00000056222.15, intron 6 of 10) protein_coding-intron (ENSMUSG00000056222.15, intron 4 of 9) 244615 ENSMUSG00000114411.1 ENSMUSG00000114411 ENSMUST00000224461 Gm48176 processed_pseudogene Interval_86297 chr19 38466330 38466625 + 0 NA Intergenic Intergenic 6725 ENSMUSG00000088940.1 ENSMUSG00000088940 ENSMUST00000158315 Gm24930 misc_RNA Interval_22715 chr11 13762139 13762554 + 0 NA Intergenic Intergenic -399733 ENSMUSG00000081631.1 ENSMUSG00000081631 ENSMUST00000121451 Gm12005 processed_pseudogene Interval_113725 chr4 57865626 57866410 + 0 NA intron (ENSMUSG00000038729.24, intron 2 of 2) protein_coding-intron (ENSMUSG00000038729.24, intron 1 of 3) 11477 ENSMUSG00000096195.1 ENSMUSG00000096195 ENSMUST00000179236 Gm26138 snRNA Interval_138044 chr6 84573447 84575247 + 0 NA exon (ENSMUSG00000063415.12, exon 7 of 7) protein_coding-exon (ENSMUSG00000063415.12, exon 7 of 7) 13333 ENSMUSG00000063415.12 ENSMUSG00000063415 ENSMUST00000204109 Cyp26b1 protein_coding Interval_96280 chr2 121232457 121233385 + 0 NA intron (ENSMUSG00000043909.16, intron 1 of 1) protein_coding-intron (ENSMUSG00000043909.16, intron 12 of 26) -11542 ENSMUSG00000043909.16 ENSMUSG00000043909 ENSMUST00000124060 Trp53bp1 protein_coding Interval_108125 chr3 121723009 121724641 + 0 NA promoter-TSS (ENSMUSG00000106224.1) TEC-promoter-TSS (ENSMUSG00000106224.1) -423 ENSMUSG00000106224.1 ENSMUSG00000106224 ENSMUST00000197391 Gm43823 TEC Interval_54630 chr14 72503186 72503794 + 0 NA Intergenic Intergenic -11652 ENSMUSG00000109446.1 ENSMUSG00000109446 ENSMUST00000208955 Gm9195 protein_coding Interval_78986 chr18 23647136 23647335 + 0 NA intron (ENSMUSG00000024302.16, intron 22 of 24) protein_coding-intron (ENSMUSG00000024302.16, intron 18 of 20) 4602 ENSMUSG00000114088.1 ENSMUSG00000114088 ENSMUST00000220789 Gm47898 antisense Interval_133759 chr6 11679746 11680480 + 0 NA Intergenic Intergenic 227370 ENSMUSG00000029632.7 ENSMUSG00000029632 ENSMUST00000204714 Ndufa4 protein_coding Interval_100988 chr2 173950025 173951203 + 0 NA Intergenic Intergenic -29788 ENSMUSG00000082543.1 ENSMUSG00000082543 ENSMUST00000117491 Gm14336 processed_pseudogene Interval_131140 chr5 135383688 135384234 + 0 NA promoter-TSS (ENSMUSG00000099212.1) miRNA-promoter-TSS (ENSMUSG00000099212.1) -151 ENSMUSG00000099212.1 ENSMUSG00000099212 ENSMUST00000184259 Mir7033 miRNA Interval_1222 chr1 17294356 17294748 + 0 NA Intergenic Intergenic -44060 ENSMUSG00000100272.1 ENSMUSG00000100272 ENSMUST00000187478 Gm28785 processed_pseudogene Interval_112329 chr4 40566209 40566612 + 0 NA Intergenic Intergenic -40862 ENSMUSG00000086355.1 ENSMUSG00000086355 ENSMUST00000146043 4933428C19Rik lincRNA Interval_165798 chr9 53247460 53248823 + 0 NA promoter-TSS (ENSMUSG00000053289.8) protein_coding-promoter-TSS (ENSMUSG00000053289.8) -88 ENSMUSG00000053289.8 ENSMUSG00000053289 ENSMUST00000065630 Ddx10 protein_coding Interval_17516 chr10 77449453 77449650 + 0 NA Intergenic Intergenic -8366 ENSMUSG00000112818.1 ENSMUSG00000112818 ENSMUST00000218522 Gm35920 lincRNA Interval_57547 chr15 12246411 12247564 + 0 NA intron (ENSMUSG00000039458.15, intron 7 of 15) protein_coding-intron (ENSMUSG00000039458.15, intron 7 of 15) -39682 ENSMUSG00000115594.1 ENSMUSG00000115594 ENSMUST00000227442 Gm46497 processed_pseudogene Interval_151176 chr7 118994145 118996583 + 0 NA promoter-TSS (ENSMUSG00000008734.9) protein_coding-promoter-TSS (ENSMUSG00000008734.9) -10720 ENSMUSG00000008734.9 ENSMUSG00000008734 ENSMUST00000207614 Gprc5b protein_coding Interval_18730 chr10 89744553 89745835 + 0 NA promoter-TSS (ENSMUSG00000019951.10) protein_coding-promoter-TSS (ENSMUSG00000019951.10) -44 ENSMUSG00000019951.10 ENSMUSG00000019951 ENSMUST00000219819 Uhrf1bp1l protein_coding Interval_169643 chr9 99661725 99663449 + 0 NA intron (ENSMUSG00000037784.14, intron 12 of 15) protein_coding-intron (ENSMUSG00000037784.14, intron 12 of 15) 12371 ENSMUSG00000037784.14 ENSMUSG00000037784 ENSMUST00000190893 Dzip1l protein_coding Interval_1861 chr1 34184403 34184841 + 0 NA TTS (ENSMUSG00000026131.20) protein_coding-TTS (ENSMUSG00000026131.20) -6176 ENSMUSG00000096992.3 ENSMUSG00000096992 ENSMUST00000187268 Gm26788 processed_transcript Interval_75201 chr17 64630768 64631244 + 0 NA intron (ENSMUSG00000024085.13, intron 3 of 21) protein_coding-intron (ENSMUSG00000024085.13, intron 3 of 21) -75346 ENSMUSG00000073377.9 ENSMUSG00000073377 ENSMUST00000168379 AU016765 lincRNA Interval_89828 chr2 25747584 25747801 + 0 NA Intergenic Intergenic 10683 ENSMUSG00000079539.2 ENSMUSG00000079539 ENSMUST00000114192 Obp2b protein_coding Interval_10108 chr1 165853645 165854163 + 0 NA intron (ENSMUSG00000005763.15, intron 1 of 8) protein_coding-intron (ENSMUSG00000005763.15, intron 1 of 7) -4860 ENSMUSG00000102154.1 ENSMUSG00000102154 ENSMUST00000193728 Gm37469 antisense Interval_119424 chr4 137569369 137570669 + 0 NA TTS (ENSMUSG00000028763.18) protein_coding-TTS (ENSMUSG00000028763.18) 12085 ENSMUSG00000094035.3 ENSMUSG00000094035 ENSMUST00000238941 Ldlrad2 protein_coding Interval_131431 chr5 137143636 137143846 + 0 NA intron (ENSMUSG00000037390.12, intron 3 of 10) protein_coding-intron (ENSMUSG00000037390.12, intron 3 of 10) -4614 ENSMUSG00000037390.12 ENSMUSG00000037390 ENSMUST00000160630 Muc3 protein_coding Interval_108350 chr3 124732488 124732782 + 0 NA Intergenic Intergenic -106874 ENSMUSG00000106423.1 ENSMUSG00000106423 ENSMUST00000198883 Gm42825 lincRNA Interval_35638 chr12 26455775 26456626 + 0 NA exon (ENSMUSG00000020641.16, exon 1 of 6) protein_coding-exon (ENSMUSG00000020641.16, exon 1 of 6) -1358 ENSMUSG00000020641.16 ENSMUSG00000020641 ENSMUST00000142732 Rsad2 protein_coding Interval_19153 chr10 95174086 95177150 + 0 NA exon (ENSMUSG00000045867.10, exon 3 of 3) protein_coding-exon (ENSMUSG00000045867.10, exon 3 of 3) 15257 ENSMUSG00000112682.1 ENSMUSG00000112682 ENSMUST00000220149 Gm48874 TEC Interval_81625 chr18 62323308 62324569 + 0 NA promoter-TSS (ENSMUSG00000026322.9) protein_coding-promoter-TSS (ENSMUSG00000026322.9) -17112 ENSMUSG00000026322.9 ENSMUSG00000026322 ENSMUST00000236691 Htr4 protein_coding Interval_90486 chr2 30743367 30744485 + 0 NA Intergenic Intergenic 22716 ENSMUSG00000093091.1 ENSMUSG00000093091 ENSMUST00000175350 Mir3089 miRNA Interval_68637 chr16 82536031 82536321 + 0 NA Intergenic Intergenic -7053 ENSMUSG00000094726.1 ENSMUSG00000094726 ENSMUST00000177614 Gm23355 snRNA Interval_143156 chr7 3789612 3789829 + 0 NA intron (ENSMUSG00000080917.2, intron 6 of 6) unprocessed_pseudogene-intron (ENSMUSG00000080917.2, intron 6 of 6) 9911 ENSMUSG00000080917.2 ENSMUSG00000080917 ENSMUST00000120641 Gm15925 unprocessed_pseudogene Interval_153275 chr7 143138484 143139223 + 0 NA intron (ENSMUSG00000101062.1, intron 1 of 2) protein_coding-intron (ENSMUSG00000009545.14, intron 1 of 15) 1755 ENSMUSG00000101062.1 ENSMUSG00000101062 ENSMUST00000185637 Gm28821 antisense Interval_11677 chr1 184584586 184584888 + 0 NA Intergenic Intergenic -4531 ENSMUSG00000089057.1 ENSMUSG00000089057 ENSMUST00000158432 Gm23349 snRNA Interval_98578 chr2 153364378 153365187 + 0 NA intron (ENSMUSG00000042548.14, intron 3 of 11) protein_coding-intron (ENSMUSG00000042548.14, intron 4 of 12) -18709 ENSMUSG00000073236.4 ENSMUSG00000073236 ENSMUST00000139636 2500004C02Rik processed_transcript Interval_16869 chr10 69366601 69367221 + 0 NA Intergenic Intergenic 6401 ENSMUSG00000112509.1 ENSMUSG00000112509 ENSMUST00000219632 Gm47211 processed_pseudogene Interval_100751 chr2 172345195 172346206 + 0 NA exon (ENSMUSG00000027495.4, exon 1 of 3) protein_coding-exon (ENSMUSG00000027495.4, exon 1 of 3) 135 ENSMUSG00000027495.4 ENSMUSG00000027495 ENSMUST00000028995 Fam210b protein_coding Interval_158411 chr8 83578290 83579256 + 0 NA intron (ENSMUSG00000110580.1, intron 1 of 1) protein_coding-intron (ENSMUSG00000031708.17, intron 1 of 12) 2729 ENSMUSG00000110580.1 ENSMUSG00000110580 ENSMUST00000212132 D830024N08Rik antisense Interval_37908 chr12 72987122 72987292 + 0 NA Intergenic Intergenic 36312 ENSMUSG00000102197.1 ENSMUSG00000102197 ENSMUST00000195404 Gm38170 TEC Interval_92784 chr2 65421072 65422182 + 0 NA Intergenic Intergenic -45345 ENSMUSG00000088197.1 ENSMUSG00000088197 ENSMUST00000157572 Gm24138 snoRNA Interval_103530 chr3 47451584 47451868 + 0 NA Intergenic Intergenic 8612 ENSMUSG00000103798.1 ENSMUSG00000103798 ENSMUST00000193328 Gm2229 processed_pseudogene Interval_77304 chr17 87925527 87926155 + 0 NA Intergenic Intergenic 4864 ENSMUSG00000093922.1 ENSMUSG00000093922 ENSMUST00000179601 Rpl36-ps4 protein_coding Interval_103634 chr3 51326957 51328085 + 0 NA intron (ENSMUSG00000037174.18, intron 1 of 9) protein_coding-intron (ENSMUSG00000037174.18, intron 1 of 9) -24618 ENSMUSG00000104200.1 ENSMUSG00000104200 ENSMUST00000195224 Gm37399 TEC Interval_95593 chr2 112599990 112600725 + 0 NA intron (ENSMUSG00000003604.14, intron 1 of 4) protein_coding-intron (ENSMUSG00000003604.14, intron 2 of 5) -13673 ENSMUSG00000105420.1 ENSMUSG00000105420 ENSMUST00000199821 Gm44374 miRNA Interval_36930 chr12 55435139 55436206 + 0 NA Intergenic Intergenic -39443 ENSMUSG00000059033.7 ENSMUSG00000059033 ENSMUST00000161190 Rpl18a-ps1 processed_pseudogene Interval_38883 chr12 83590380 83590608 + 0 NA TTS (ENSMUSG00000042628.8) protein_coding-TTS (ENSMUSG00000042628.8) 6328 ENSMUSG00000042628.8 ENSMUSG00000042628 ENSMUST00000223380 Zfyve1 protein_coding Interval_22251 chr11 8147067 8150376 + 0 NA Intergenic Intergenic -34627 ENSMUSG00000082459.1 ENSMUSG00000082459 ENSMUST00000122321 Gm11988 processed_pseudogene Interval_152416 chr7 132883628 132884506 + 0 NA exon (ENSMUSG00000030965.19, exon 9 of 9) protein_coding-exon (ENSMUSG00000030965.19, exon 9 of 9) 4620 ENSMUSG00000097595.2 ENSMUSG00000097595 ENSMUST00000180905 1500002F19Rik processed_transcript Interval_86336 chr19 38844635 38845979 + 0 NA intron (ENSMUSG00000048720.8, intron 1 of 10) protein_coding-intron (ENSMUSG00000048720.8, intron 1 of 12) 8630 ENSMUSG00000048720.8 ENSMUSG00000048720 ENSMUST00000235558 Tbc1d12 protein_coding Interval_55673 chr14 98830431 98831289 + 0 NA Intergenic Intergenic 90085 ENSMUSG00000115242.1 ENSMUSG00000115242 ENSMUST00000226462 Gm49018 lincRNA Interval_57588 chr15 12629827 12630027 + 0 NA intron (ENSMUSG00000022197.16, intron 2 of 4) protein_coding-intron (ENSMUSG00000022197.16, intron 2 of 4) 5419 ENSMUSG00000103130.1 ENSMUSG00000103130 ENSMUST00000191701 F830212C03Rik TEC Interval_23341 chr11 21571403 21572491 + 0 NA promoter-TSS (ENSMUSG00000020319.9) protein_coding-promoter-TSS (ENSMUSG00000020319.9) -13 ENSMUSG00000020321.16 ENSMUSG00000020321 ENSMUST00000125302 Mdh1 protein_coding Interval_134058 chr6 18358798 18359204 + 0 NA Intergenic Intergenic 64730 ENSMUSG00000080767.1 ENSMUSG00000080767 ENSMUST00000120840 Gm15595 processed_pseudogene Interval_166479 chr9 59947967 59948442 + 0 NA TTS (ENSMUSG00000032292.8) protein_coding-TTS (ENSMUSG00000032292.8) 1906 ENSMUSG00000032292.8 ENSMUSG00000032292 ENSMUST00000138888 Nr2e3 protein_coding Interval_62247 chr15 89157728 89158640 + 0 NA promoter-TSS (ENSMUSG00000036606.17) protein_coding-promoter-TSS (ENSMUSG00000036606.17) 267 ENSMUSG00000036606.17 ENSMUSG00000036606 ENSMUST00000131062 Plxnb2 protein_coding Interval_27023 chr11 62426966 62427536 + 0 NA intron (ENSMUSG00000018501.17, intron 2 of 14) protein_coding-intron (ENSMUSG00000018501.17, intron 3 of 45) -31357 ENSMUSG00000014245.8 ENSMUSG00000014245 ENSMUST00000147918 Pigl protein_coding Interval_93817 chr2 77175946 77177826 + 0 NA Intergenic Intergenic 22541 ENSMUSG00000042272.17 ENSMUSG00000042272 ENSMUST00000139021 Sestd1 protein_coding Interval_3088 chr1 53100005 53100378 + 0 NA TTS (ENSMUSG00000089334.1) snoRNA-TTS (ENSMUSG00000089334.1) 141 ENSMUSG00000089334.1 ENSMUSG00000089334 ENSMUST00000158709 Gm24349 snoRNA Interval_7935 chr1 134641368 134641865 + 0 NA TTS (ENSMUSG00000097435.1) lincRNA-TTS (ENSMUSG00000097435.1) 4904 ENSMUSG00000097435.1 ENSMUSG00000097435 ENSMUST00000181197 Gm26783 lincRNA Interval_96875 chr2 129177804 129179194 + 0 NA promoter-TSS (ENSMUSG00000084826.7) antisense-promoter-TSS (ENSMUSG00000084826.7) 2133 ENSMUSG00000084826.7 ENSMUSG00000084826 ENSMUST00000138431 AI847159 antisense Interval_143129 chr7 3506785 3507426 + 0 NA Intergenic Intergenic -4481 ENSMUSG00000053338.9 ENSMUSG00000053338 ENSMUST00000065703 Tarm1 protein_coding Interval_102136 chr3 18431246 18431625 + 0 NA intron (ENSMUSG00000102886.1, intron 2 of 5) lincRNA-intron (ENSMUSG00000102886.1, intron 2 of 5) 29819 ENSMUSG00000102886.1 ENSMUSG00000102886 ENSMUST00000193120 Gm30667 lincRNA Interval_161097 chr8 117448053 117448722 + 0 NA intron (ENSMUSG00000034390.16, intron 7 of 14) protein_coding-intron (ENSMUSG00000034390.16, intron 13 of 20) -4636 ENSMUSG00000099062.1 ENSMUSG00000099062 ENSMUST00000183991 Mir7077 miRNA Interval_40320 chr12 103569852 103570468 + 0 NA intron (ENSMUSG00000021209.12, intron 3 of 25) protein_coding-intron (ENSMUSG00000021209.12, intron 3 of 24) -11238 ENSMUSG00000021209.12 ENSMUSG00000021209 ENSMUST00000190151 Ppp4r4 protein_coding Interval_20785 chr10 120938058 120938836 + 0 NA intron (ENSMUSG00000048661.14, intron 4 of 13) protein_coding-intron (ENSMUSG00000048661.14, intron 4 of 13) 10261 ENSMUSG00000082936.1 ENSMUSG00000082936 ENSMUST00000118291 Gm16166 processed_pseudogene Interval_15835 chr10 57794266 57795542 + 0 NA intron (ENSMUSG00000019872.13, intron 1 of 4) protein_coding-intron (ENSMUSG00000019872.13, intron 1 of 7) 569 ENSMUSG00000019872.13 ENSMUSG00000019872 ENSMUST00000125076 Smpdl3a protein_coding Interval_20797 chr10 121010959 121011989 + 0 NA Intergenic Intergenic -10413 ENSMUSG00000112192.1 ENSMUSG00000112192 ENSMUST00000219168 Gm48341 lincRNA Interval_30819 chr11 96692142 96692439 + 0 NA intron (ENSMUSG00000057058.16, intron 4 of 7) protein_coding-intron (ENSMUSG00000057058.16, intron 4 of 11) -74512 ENSMUSG00000085242.1 ENSMUSG00000085242 ENSMUST00000124865 Gm11537 antisense Interval_156515 chr8 49035257 49035791 + 0 NA Intergenic Intergenic -8756 ENSMUSG00000110503.1 ENSMUSG00000110503 ENSMUST00000212945 Gm45830 lincRNA Interval_47593 chr13 89667977 89668770 + 0 NA intron (ENSMUSG00000021614.16, intron 1 of 2) protein_coding-intron (ENSMUSG00000021614.16, intron 10 of 12) 5603 ENSMUSG00000089972.3 ENSMUSG00000089972 ENSMUST00000162402 Gm16318 processed_pseudogene Interval_65250 chr16 20853691 20856107 + 0 NA Intergenic Intergenic -32259 ENSMUSG00000099764.1 ENSMUSG00000099764 ENSMUST00000127484 Rps10-ps2 processed_pseudogene Interval_104400 chr3 65297145 65297439 + 0 NA promoter-TSS (ENSMUSG00000027827.17) protein_coding-promoter-TSS (ENSMUSG00000027827.17) 5393 ENSMUSG00000104093.1 ENSMUSG00000104093 ENSMUST00000195489 A330015K06Rik antisense Interval_33222 chr11 115319846 115320272 + 0 NA intron (ENSMUSG00000045288.10, intron 1 of 2) protein_coding-intron (ENSMUSG00000050201.9, intron 1 of 7) 1982 ENSMUSG00000045288.10 ENSMUSG00000045288 ENSMUST00000103037 Ush1g protein_coding Interval_163039 chr9 14724882 14725458 + 0 NA intron (ENSMUSG00000036912.18, intron 8 of 19) protein_coding-intron (ENSMUSG00000036912.18, intron 8 of 18) -11025 ENSMUSG00000082564.1 ENSMUSG00000082564 ENSMUST00000121218 Gm15586 processed_pseudogene Interval_7857 chr1 134188626 134189862 + 0 NA exon (ENSMUSG00000064246.10, exon 9 of 10) protein_coding-exon (ENSMUSG00000064246.10, exon 9 of 10) -4213 ENSMUSG00000042451.12 ENSMUSG00000042451 ENSMUST00000191577 Mybph protein_coding Interval_82614 chr18 75434484 75435292 + 0 NA exon (ENSMUSG00000052928.9, exon 12 of 12) protein_coding-exon (ENSMUSG00000052928.9, exon 12 of 12) 65898 ENSMUSG00000025880.11 ENSMUSG00000025880 ENSMUST00000172718 Smad7 protein_coding Interval_161204 chr8 118635517 118636175 + 0 NA intron (ENSMUSG00000031841.19, intron 2 of 7) protein_coding-intron (ENSMUSG00000031841.19, intron 2 of 13) -19967 ENSMUSG00000110667.1 ENSMUSG00000110667 ENSMUST00000211881 Gm45720 antisense Interval_46128 chr13 61874724 61875461 + 0 NA Intergenic Intergenic -42457 ENSMUSG00000113887.1 ENSMUSG00000113887 ENSMUST00000222548 Gm35619 processed_pseudogene Interval_129662 chr5 121599838 121602365 + 0 NA intron (ENSMUSG00000042647.13, intron 8 of 10) protein_coding-intron (ENSMUSG00000042647.13, intron 8 of 10) 7406 ENSMUSG00000106590.1 ENSMUSG00000106590 ENSMUST00000198656 Gm42879 TEC Interval_36194 chr12 38778145 38780769 + 0 NA promoter-TSS (ENSMUSG00000004151.17) protein_coding-promoter-TSS (ENSMUSG00000004151.17) -37247 ENSMUSG00000113520.1 ENSMUSG00000113520 ENSMUST00000222877 Gm4257 processed_pseudogene Interval_110521 chr4 3548516 3548725 + 0 NA TTS (ENSMUSG00000028232.13) protein_coding-TTS (ENSMUSG00000028232.13) 11530 ENSMUSG00000094253.1 ENSMUSG00000094253 ENSMUST00000174896 Mir3471-2 miRNA Interval_141058 chr6 124738478 124739205 + 0 NA promoter-TSS (ENSMUSG00000004266.15) protein_coding-promoter-TSS (ENSMUSG00000004266.15) 2224 ENSMUSG00000072772.3 ENSMUSG00000072772 ENSMUST00000137318 Grcc10 protein_coding Interval_165707 chr9 51253377 51253717 + 0 NA Intergenic Intergenic 20404 ENSMUSG00000032053.8 ENSMUSG00000032053 ENSMUST00000214322 Pou2af1 protein_coding Interval_25146 chr11 44545348 44545989 + 0 NA intron (ENSMUSG00000019189.13, intron 4 of 4) protein_coding-intron (ENSMUSG00000019189.13, intron 4 of 10) -11163 ENSMUSG00000019189.13 ENSMUSG00000019189 ENSMUST00000129676 Rnf145 protein_coding Interval_132738 chr5 147489489 147489744 + 0 NA intron (ENSMUSG00000029647.15, intron 4 of 16) protein_coding-intron (ENSMUSG00000029647.15, intron 5 of 18) 50226 ENSMUSG00000107085.1 ENSMUSG00000107085 ENSMUST00000202594 Gm42883 processed_pseudogene Interval_149794 chr7 101543532 101543776 + 0 NA Intergenic Intergenic -5324 ENSMUSG00000110301.1 ENSMUSG00000110301 ENSMUST00000209330 Gm35363 lincRNA Interval_161198 chr8 118502534 118503072 + 0 NA intron (ENSMUSG00000031841.19, intron 2 of 8) protein_coding-intron (ENSMUSG00000031841.19, intron 1 of 13) -76204 ENSMUSG00000064801.1 ENSMUSG00000064801 ENSMUST00000082867 Gm24035 snRNA Interval_99564 chr2 163256383 163256622 + 0 NA intron (ENSMUSG00000074607.11, intron 2 of 8) protein_coding-intron (ENSMUSG00000074607.11, intron 2 of 8) 31048 ENSMUSG00000074607.11 ENSMUSG00000074607 ENSMUST00000148599 Tox2 protein_coding Interval_34836 chr12 12400957 12401856 + 0 NA Intergenic Intergenic -8791 ENSMUSG00000114136.1 ENSMUSG00000114136 ENSMUST00000220545 4921511I17Rik antisense Interval_142877 chr6 146626122 146626641 + 0 NA intron (ENSMUSG00000040234.16, intron 1 of 3) protein_coding-intron (ENSMUSG00000040234.16, intron 1 of 11) -16210 ENSMUSG00000030291.12 ENSMUSG00000030291 ENSMUST00000075077 Med21 protein_coding Interval_114479 chr4 80855013 80855953 + 0 NA Intergenic Intergenic 8895 ENSMUSG00000005994.14 ENSMUSG00000005994 ENSMUST00000133932 Tyrp1 protein_coding Interval_31631 chr11 101896648 101898711 + 0 NA Intergenic Intergenic -3305 ENSMUSG00000001493.9 ENSMUSG00000001493 ENSMUST00000057054 Meox1 protein_coding Interval_50089 chr14 7911935 7912599 + 0 NA intron (ENSMUSG00000025278.9, intron 24 of 45) protein_coding-intron (ENSMUSG00000025278.9, intron 24 of 45) 27526 ENSMUSG00000025278.9 ENSMUSG00000025278 ENSMUST00000228206 Flnb protein_coding Interval_137949 chr6 83672750 83674140 + 0 NA intron (ENSMUSG00000034783.7, intron 4 of 5) protein_coding-intron (ENSMUSG00000034783.7, intron 4 of 5) 4412 ENSMUSG00000034783.7 ENSMUSG00000034783 ENSMUST00000037882 Cd207 protein_coding Interval_55551 chr14 91717369 91718098 + 0 NA intron (ENSMUSG00000115171.1, intron 1 of 1) unprocessed_pseudogene-intron (ENSMUSG00000115171.1, intron 1 of 1) 41285 ENSMUSG00000115171.1 ENSMUSG00000115171 ENSMUST00000227750 Gm48943 unprocessed_pseudogene Interval_75623 chr17 69441044 69441377 + 0 NA intron (ENSMUSG00000091636.2, intron 1 of 1) protein_coding-intron (ENSMUSG00000091636.2, intron 1 of 1) 1376 ENSMUSG00000091636.2 ENSMUSG00000091636 ENSMUST00000233983 Akain1 protein_coding Interval_150138 chr7 107290118 107290429 + 0 NA intron (ENSMUSG00000057215.6, intron 3 of 5) lincRNA-intron (ENSMUSG00000057215.6, intron 3 of 5) 29490 ENSMUSG00000076951.1 ENSMUSG00000076951 ENSMUST00000103763 Gm24932 miRNA Interval_87581 chr19 53571721 53572844 + 0 NA Intergenic Intergenic 16786 ENSMUSG00000071497.4 ENSMUSG00000071497 ENSMUST00000095978 Nutf2-ps1 protein_coding Interval_64202 chr16 9092541 9093340 + 0 NA intron (ENSMUSG00000116469.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000116469.1, intron 1 of 2) 12795 ENSMUSG00000116469.1 ENSMUSG00000116469 ENSMUST00000229166 Gm49448 lincRNA Interval_44155 chr13 41283140 41283716 + 0 NA Intergenic Intergenic -9451 ENSMUSG00000090853.1 ENSMUSG00000090853 ENSMUST00000163881 Gm17364 protein_coding Interval_12289 chr1 191411056 191411608 + 0 NA Intergenic Intergenic 3666 ENSMUSG00000103433.1 ENSMUSG00000103433 ENSMUST00000194903 Gm2272 processed_pseudogene Interval_106376 chr3 95738902 95739683 + 0 NA TTS (ENSMUSG00000028107.14) protein_coding-TTS (ENSMUSG00000028107.14) -1069 ENSMUSG00000028108.15 ENSMUSG00000028108 ENSMUST00000147217 Ecm1 protein_coding Interval_142687 chr6 145010117 145011118 + 0 NA intron (ENSMUSG00000030268.17, intron 4 of 5) protein_coding-intron (ENSMUSG00000030268.17, intron 7 of 10) 27571 ENSMUSG00000088867.1 ENSMUSG00000088867 ENSMUST00000158242 Gm23071 rRNA Interval_173760 chrX 103529174 103529681 + 0 NA promoter-TSS (ENSMUSG00000081004.1) transcribed_processed_pseudogene-promoter-TSS (ENSMUSG00000081004.1) -56 ENSMUSG00000081004.1 ENSMUSG00000081004 ENSMUST00000117673 Gm9157 transcribed_processed_pseudogene Interval_40178 chr12 102339042 102339495 + 0 NA intron (ENSMUSG00000044456.16, intron 3 of 9) protein_coding-intron (ENSMUSG00000044456.16, intron 3 of 9) 56100 ENSMUSG00000044456.16 ENSMUSG00000044456 ENSMUST00000139686 Rin3 protein_coding Interval_104770 chr3 72581481 72581726 + 0 NA Intergenic Intergenic 22745 ENSMUSG00000103078.1 ENSMUSG00000103078 ENSMUST00000195107 Gm37901 processed_pseudogene Interval_90062 chr2 27644059 27645520 + 0 NA Intergenic Intergenic -80430 ENSMUSG00000015846.15 ENSMUSG00000015846 ENSMUST00000148756 Rxra protein_coding Interval_126751 chr5 92553913 92555727 + 0 NA promoter-TSS (ENSMUSG00000057068.15) protein_coding-promoter-TSS (ENSMUSG00000057068.15) -16657 ENSMUSG00000057068.15 ENSMUSG00000057068 ENSMUST00000082382 Fam47e protein_coding Interval_33227 chr11 115348802 115349417 + 0 NA TTS (ENSMUSG00000034586.14) protein_coding-TTS (ENSMUSG00000034586.14) 6264 ENSMUSG00000034586.14 ENSMUSG00000034586 ENSMUST00000152977 Hid1 protein_coding Interval_173695 chrX 102065932 102066408 + 0 NA TTS (ENSMUSG00000049191.12) protein_coding-TTS (ENSMUSG00000049191.12) 5134 ENSMUSG00000049191.12 ENSMUSG00000049191 ENSMUST00000139878 Rtl5 protein_coding Interval_91611 chr2 44578487 44578680 + 0 NA intron (ENSMUSG00000036890.13, intron 5 of 5) protein_coding-intron (ENSMUSG00000036890.13, intron 4 of 7) 149648 ENSMUSG00000088124.1 ENSMUSG00000088124 ENSMUST00000157499 Gm22867 snRNA Interval_170400 chr9 107683241 107684461 + 0 NA TTS (ENSMUSG00000034684.12) protein_coding-TTS (ENSMUSG00000034684.12) 910 ENSMUSG00000034684.12 ENSMUSG00000034684 ENSMUST00000195023 Sema3f protein_coding Interval_87762 chr19 55712282 55713199 + 0 NA Intergenic Intergenic -29524 ENSMUSG00000024985.20 ENSMUSG00000024985 ENSMUST00000148666 Tcf7l2 protein_coding Interval_72410 chr17 29660211 29661257 + 0 NA promoter-TSS (ENSMUSG00000024019.18) protein_coding-promoter-TSS (ENSMUSG00000024019.18) 120 ENSMUSG00000024019.18 ENSMUSG00000024019 ENSMUST00000234666 Cmtr1 protein_coding Interval_5331 chr1 87647961 87648918 + 0 NA intron (ENSMUSG00000026288.14, intron 2 of 26) protein_coding-intron (ENSMUSG00000026288.14, intron 2 of 26) -27800 ENSMUSG00000026288.14 ENSMUSG00000026288 ENSMUST00000163548 Inpp5d protein_coding Interval_65202 chr16 20490337 20491044 + 0 NA exon (ENSMUSG00000093381.1, exon 4 of 5) unprocessed_pseudogene-exon (ENSMUSG00000093381.1, exon 4 of 5) 1902 ENSMUSG00000093381.1 ENSMUSG00000093381 ENSMUST00000177503 Gm20615 unprocessed_pseudogene Interval_129311 chr5 118879863 118880102 + 0 NA Intergenic Intergenic -2517 ENSMUSG00000106708.1 ENSMUSG00000106708 ENSMUST00000202790 Gm43782 lincRNA Interval_120333 chr4 147953336 147954209 + 0 NA Intergenic Intergenic 12877 ENSMUSG00000044496.6 ENSMUSG00000044496 ENSMUST00000103232 2510039O18Rik protein_coding Interval_24071 chr11 29974300 29974480 + 0 NA intron (ENSMUSG00000044072.14, intron 2 of 41) protein_coding-intron (ENSMUSG00000044072.14, intron 2 of 41) -8024 ENSMUSG00000080906.1 ENSMUSG00000080906 ENSMUST00000121962 Gm12095 processed_pseudogene Interval_14752 chr10 39592216 39593169 + 0 NA intron (ENSMUSG00000086915.7, intron 2 of 2) antisense-intron (ENSMUSG00000086915.7, intron 2 of 2) 20990 ENSMUSG00000086915.7 ENSMUSG00000086915 ENSMUST00000143877 Gm16364 antisense Interval_32655 chr11 109454503 109455537 + 0 NA exon (ENSMUSG00000041920.14, exon 5 of 6) protein_coding-exon (ENSMUSG00000041920.14, exon 5 of 6) 11411 ENSMUSG00000080530.1 ENSMUSG00000080530 ENSMUST00000116880 Gm25540 miRNA Interval_70518 chr17 11442681 11443712 + 0 NA intron (ENSMUSG00000023826.16, intron 5 of 10) protein_coding-intron (ENSMUSG00000023826.16, intron 5 of 6) 102602 ENSMUSG00000099618.1 ENSMUSG00000099618 ENSMUST00000185957 Gm28118 processed_pseudogene Interval_128548 chr5 113955901 113957046 + 0 NA intron (ENSMUSG00000042121.16, intron 9 of 14) protein_coding-intron (ENSMUSG00000042121.16, intron 8 of 13) 10283 ENSMUSG00000042121.16 ENSMUSG00000042121 ENSMUST00000162322 Ssh1 protein_coding Interval_13790 chr10 22361393 22362415 + 0 NA promoter-TSS (ENSMUSG00000078452.10) protein_coding-promoter-TSS (ENSMUSG00000078452.10) 1352 ENSMUSG00000078452.10 ENSMUSG00000078452 ENSMUST00000095795 Raet1d protein_coding Interval_162060 chr8 124810363 124811429 + 0 NA intron (ENSMUSG00000036913.15, intron 1 of 10) protein_coding-intron (ENSMUSG00000036913.15, intron 1 of 10) 17804 ENSMUSG00000036913.15 ENSMUSG00000036913 ENSMUST00000211867 Trim67 protein_coding Interval_90391 chr2 30147304 30147573 + 0 NA TTS (ENSMUSG00000039678.12) protein_coding-TTS (ENSMUSG00000039678.12) -11960 ENSMUSG00000085401.2 ENSMUSG00000085401 ENSMUST00000120862 Slc39a1-ps processed_pseudogene Interval_65604 chr16 23980766 23984915 + 0 NA intron (ENSMUSG00000022508.5, intron 1 of 9) protein_coding-intron (ENSMUSG00000022508.5, intron 1 of 9) -5642 ENSMUSG00000110291.1 ENSMUSG00000110291 ENSMUST00000210705 Gm37419 protein_coding Interval_103037 chr3 34662763 34662969 + 0 NA TTS (ENSMUSG00000105284.1) TEC-TTS (ENSMUSG00000105284.1) 1423 ENSMUSG00000105284.1 ENSMUSG00000105284 ENSMUST00000196779 Gm42693 TEC Interval_56440 chr14 118774409 118775289 + 0 NA promoter-TSS (ENSMUSG00000088105.1) snoRNA-promoter-TSS (ENSMUSG00000088105.1) -303 ENSMUSG00000088105.1 ENSMUSG00000088105 ENSMUST00000157480 Gm22379 snoRNA Interval_5760 chr1 91537135 91538714 + 0 NA Intergenic Intergenic -2808 ENSMUSG00000026311.16 ENSMUSG00000026311 ENSMUST00000188879 Asb1 protein_coding Interval_126741 chr5 92461088 92461605 + 0 NA intron (ENSMUSG00000029426.8, intron 3 of 11) protein_coding-intron (ENSMUSG00000029426.8, intron 3 of 11) 2789 ENSMUSG00000099160.1 ENSMUSG00000099160 ENSMUST00000184064 Mir6415 miRNA Interval_9344 chr1 156462954 156463340 + 0 NA intron (ENSMUSG00000026600.12, intron 1 of 6) protein_coding-intron (ENSMUSG00000026600.12, intron 1 of 14) 7857 ENSMUSG00000103199.1 ENSMUSG00000103199 ENSMUST00000192072 Gm37648 TEC Interval_22252 chr11 8228080 8228353 + 0 NA Intergenic Intergenic -114122 ENSMUSG00000082459.1 ENSMUSG00000082459 ENSMUST00000122321 Gm11988 processed_pseudogene Interval_33086 chr11 114311006 114312341 + 0 NA Intergenic Intergenic -45456 ENSMUSG00000081548.1 ENSMUSG00000081548 ENSMUST00000122121 Gm11692 processed_pseudogene Interval_128435 chr5 113300392 113302446 + 0 NA intron (ENSMUSG00000042216.13, intron 2 of 17) protein_coding-intron (ENSMUSG00000042216.13, intron 2 of 24) 20234 ENSMUSG00000104705.1 ENSMUSG00000104705 ENSMUST00000199950 4930405N21Rik TEC Interval_54077 chr14 65052141 65054105 + 0 NA exon (ENSMUSG00000021978.9, exon 7 of 7) protein_coding-exon (ENSMUSG00000021978.9, exon 7 of 7) 44982 ENSMUSG00000021978.9 ENSMUSG00000021978 ENSMUST00000223989 Extl3 protein_coding Interval_107002 chr3 102755835 102756055 + 0 NA intron (ENSMUSG00000027858.13, intron 2 of 7) protein_coding-intron (ENSMUSG00000027858.13, intron 2 of 7) -3365 ENSMUSG00000027858.13 ENSMUSG00000027858 ENSMUST00000197345 Tspan2 protein_coding Interval_4493 chr1 74549050 74549659 + 0 NA exon (ENSMUSG00000026173.15, exon 4 of 18) protein_coding-exon (ENSMUSG00000026173.15, exon 4 of 18) -11073 ENSMUSG00000026173.15 ENSMUSG00000026173 ENSMUST00000135111 Plcd4 protein_coding Interval_167511 chr9 70173467 70174638 + 0 NA Intergenic Intergenic -25116 ENSMUSG00000077660.1 ENSMUSG00000077660 ENSMUST00000104472 Gm24257 snoRNA Interval_114925 chr4 87037470 87038027 + 0 NA intron (ENSMUSG00000037996.17, intron 4 of 9) protein_coding-intron (ENSMUSG00000037996.17, intron 4 of 9) 107057 ENSMUSG00000038007.14 ENSMUSG00000038007 ENSMUST00000135874 Acer2 protein_coding Interval_167143 chr9 65619173 65620250 + 0 NA Intergenic Intergenic 32506 ENSMUSG00000041064.14 ENSMUSG00000041064 ENSMUST00000141046 Pif1 protein_coding Interval_128307 chr5 112454896 112456302 + 0 NA intron (ENSMUSG00000058153.15, intron 9 of 14) protein_coding-intron (ENSMUSG00000058153.15, intron 9 of 16) 6173 ENSMUSG00000072722.2 ENSMUSG00000072722 ENSMUST00000100882 Gm6588 protein_coding Interval_14049 chr10 26077785 26079469 + 0 NA promoter-TSS (ENSMUSG00000049420.9) protein_coding-promoter-TSS (ENSMUSG00000049420.9) 372 ENSMUSG00000039098.3 ENSMUSG00000039098 ENSMUST00000041011 Gm9767 antisense Interval_6074 chr1 95935434 95935753 + 0 NA Intergenic Intergenic 86165 ENSMUSG00000100062.1 ENSMUSG00000100062 ENSMUST00000190901 1700063A18Rik lincRNA Interval_5170 chr1 86219644 86220600 + 0 NA intron (ENSMUSG00000062590.13, intron 7 of 8) protein_coding-intron (ENSMUSG00000062590.13, intron 19 of 24) 65323 ENSMUSG00000062590.13 ENSMUSG00000062590 ENSMUST00000126579 Armc9 protein_coding Interval_29002 chr11 79848739 79849142 + 0 NA intron (ENSMUSG00000086474.2, intron 2 of 4) lincRNA-intron (ENSMUSG00000086474.2, intron 2 of 4) -43768 ENSMUSG00000086474.2 ENSMUSG00000086474 ENSMUST00000162268 9130204K15Rik lincRNA Interval_23738 chr11 25646594 25646857 + 0 NA intron (ENSMUSG00000032985.15, intron 2 of 2) protein_coding-intron (ENSMUSG00000032985.15, intron 6 of 6) -38415 ENSMUSG00000064761.1 ENSMUSG00000064761 ENSMUST00000082827 Gm23514 snoRNA Interval_153580 chr8 3510134 3510650 + 0 NA promoter-TSS (ENSMUSG00000004567.16) protein_coding-promoter-TSS (ENSMUSG00000004567.16) -1409 ENSMUSG00000004567.16 ENSMUSG00000004567 ENSMUST00000161705 Mcoln1 protein_coding Interval_83221 chr18 82838809 82839463 + 0 NA Intergenic Intergenic -16758 ENSMUSG00000097738.2 ENSMUSG00000097738 ENSMUST00000180631 4930445N18Rik lincRNA Interval_147213 chr7 64661757 64662370 + 0 NA intron (ENSMUSG00000030519.14, intron 1 of 11) protein_coding-intron (ENSMUSG00000030519.14, intron 3 of 14) -82520 ENSMUSG00000030519.14 ENSMUSG00000030519 ENSMUST00000206630 Apba2 protein_coding Interval_174171 chrX 137099991 137100362 + 0 NA TTS (ENSMUSG00000080718.1) processed_pseudogene-TTS (ENSMUSG00000080718.1) 660 ENSMUSG00000080718.1 ENSMUSG00000080718 ENSMUST00000119317 Gm8019 processed_pseudogene Interval_121876 chr5 9063680 9065330 + 0 NA Intergenic Intergenic 29725 ENSMUSG00000114430.1 ENSMUSG00000114430 ENSMUST00000224996 Gm40264 lincRNA Interval_43696 chr13 35164687 35165452 + 0 NA Intergenic Intergenic 2735 ENSMUSG00000113906.1 ENSMUSG00000113906 ENSMUST00000220538 4930529N20Rik lincRNA Interval_83828 chr19 4942462 4943421 + 0 NA exon (ENSMUSG00000024901.15, exon 1 of 7) protein_coding-exon (ENSMUSG00000024901.15, exon 1 of 7) 157 ENSMUSG00000024901.15 ENSMUSG00000024901 ENSMUST00000143930 Peli3 protein_coding Interval_10705 chr1 173366831 173368243 + 0 NA promoter-TSS (ENSMUSG00000005338.13) protein_coding-promoter-TSS (ENSMUSG00000005338.13) 111 ENSMUSG00000005338.13 ENSMUSG00000005338 ENSMUST00000126963 Cadm3 protein_coding Interval_10974 chr1 177705346 177705872 + 0 NA Intergenic Intergenic -24205 ENSMUSG00000015962.5 ENSMUSG00000015962 ENSMUST00000016106 1700016C15Rik protein_coding Interval_7044 chr1 123727385 123727580 + 0 NA intron (ENSMUSG00000036815.17, intron 3 of 25) protein_coding-intron (ENSMUSG00000036815.17, intron 3 of 25) -29076 ENSMUSG00000101985.1 ENSMUSG00000101985 ENSMUST00000185330 Gm28929 processed_pseudogene Interval_53168 chr14 54875943 54877795 + 0 NA promoter-TSS (ENSMUSG00000072494.7) protein_coding-promoter-TSS (ENSMUSG00000072494.7) -248 ENSMUSG00000072494.7 ENSMUSG00000072494 ENSMUST00000168622 Ppp1r3e protein_coding Interval_143873 chr7 16869304 16869996 + 0 NA intron (ENSMUSG00000041187.16, intron 3 of 3) protein_coding-intron (ENSMUSG00000041187.16, intron 17 of 17) 5236 ENSMUSG00000097842.2 ENSMUSG00000097842 ENSMUST00000205647 9330104G04Rik lincRNA Interval_29389 chr11 83587513 83589098 + 0 NA TTS (ENSMUSG00000018927.3) protein_coding-TTS (ENSMUSG00000018927.3) 4670 ENSMUSG00000018927.3 ENSMUSG00000018927 ENSMUST00000150243 Ccl6 protein_coding Interval_130012 chr5 123701894 123702472 + 0 NA intron (ENSMUSG00000029427.11, intron 2 of 2) protein_coding-intron (ENSMUSG00000029427.11, intron 13 of 13) 17408 ENSMUSG00000104694.1 ENSMUSG00000104694 ENSMUST00000198221 Gm43797 TEC Interval_161514 chr8 120846661 120846908 + 0 NA intron (ENSMUSG00000092329.1, intron 1 of 15) protein_coding-intron (ENSMUSG00000092329.1, intron 1 of 15) -33422 ENSMUSG00000097087.1 ENSMUSG00000097087 ENSMUST00000181778 Gm26878 lincRNA Interval_112915 chr4 46025849 46026388 + 0 NA promoter-TSS (ENSMUSG00000035517.17) protein_coding-promoter-TSS (ENSMUSG00000035517.17) 17 ENSMUSG00000035517.17 ENSMUSG00000035517 ENSMUST00000155936 Tdrd7 protein_coding Interval_146127 chr7 44222130 44222320 + 0 NA intron (ENSMUSG00000062073.6, intron 2 of 3) transcribed_unprocessed_pseudogene-intron (ENSMUSG00000062073.6, intron 3 of 3) 1485 ENSMUSG00000062073.6 ENSMUSG00000062073 ENSMUST00000206890 Gm10109 transcribed_unprocessed_pseudogene Interval_20496 chr10 117946951 117947985 + 0 NA exon (ENSMUSG00000112500.1, exon 4 of 4) lincRNA-exon (ENSMUSG00000112500.1, exon 4 of 4) 22009 ENSMUSG00000112500.1 ENSMUSG00000112500 ENSMUST00000217950 4933411E08Rik lincRNA Interval_84804 chr19 16872319 16874892 + 0 NA exon (ENSMUSG00000056829.4, exon 1 of 1) protein_coding-exon (ENSMUSG00000056829.4, exon 1 of 1) 200 ENSMUSG00000056829.4 ENSMUSG00000056829 ENSMUST00000072915 Foxb2 protein_coding Interval_123623 chr5 33900699 33900909 + 0 NA intron (ENSMUSG00000029111.7, intron 7 of 10) protein_coding-intron (ENSMUSG00000029111.7, intron 7 of 10) -1833 ENSMUSG00000098830.1 ENSMUSG00000098830 ENSMUST00000183676 Mir7024 miRNA Interval_116700 chr4 116720509 116721529 + 0 NA promoter-TSS (ENSMUSG00000033985.17) protein_coding-promoter-TSS (ENSMUSG00000033985.17) -4880 ENSMUSG00000098491.1 ENSMUSG00000098491 ENSMUST00000183634 Gm27688 misc_RNA Interval_132569 chr5 146384869 146386307 + 0 NA intron (ENSMUSG00000029636.11, intron 1 of 9) protein_coding-intron (ENSMUSG00000029636.11, intron 1 of 9) -70021 ENSMUSG00000029636.11 ENSMUSG00000029636 ENSMUST00000238592 Wasf3 protein_coding Interval_172466 chrX 20797822 20799513 + 0 NA intron (ENSMUSG00000001127.12, intron 1 of 16) protein_coding-intron (ENSMUSG00000001127.12, intron 1 of 16) 1769 ENSMUSG00000065314.1 ENSMUSG00000065314 ENSMUST00000083380 Gm26065 snRNA Interval_103533 chr3 47656244 47656695 + 0 NA Intergenic Intergenic -196131 ENSMUSG00000103798.1 ENSMUSG00000103798 ENSMUST00000193328 Gm2229 processed_pseudogene Interval_155052 chr8 25972578 25973505 + 0 NA promoter-TSS (ENSMUSG00000037260.8) protein_coding-promoter-TSS (ENSMUSG00000037260.8) 1012 ENSMUSG00000037260.8 ENSMUSG00000037260 ENSMUST00000209420 Hgsnat protein_coding Interval_148004 chr7 77656337 77656597 + 0 NA Intergenic Intergenic 243894 ENSMUSG00000108324.1 ENSMUSG00000108324 ENSMUST00000206827 Gm44608 TEC Interval_34070 chr11 120303456 120305359 + 0 NA Intergenic Intergenic 14614 ENSMUSG00000039741.15 ENSMUSG00000039741 ENSMUST00000143667 Bahcc1 protein_coding Interval_76408 chr17 79987585 79987776 + 0 NA Intergenic Intergenic -6018 ENSMUSG00000117415.1 ENSMUSG00000117415 ENSMUST00000234800 Gm41625 lincRNA Interval_72499 chr17 30206775 30207284 + 0 NA intron (ENSMUSG00000044477.12, intron 1 of 1) protein_coding-intron (ENSMUSG00000044477.12, intron 4 of 4) 29554 ENSMUSG00000117974.1 ENSMUSG00000117974 ENSMUST00000236459 Tuba-rs1 transcribed_processed_pseudogene Interval_120398 chr4 148365589 148366374 + 0 NA Intergenic Intergenic -6521 ENSMUSG00000086326.1 ENSMUSG00000086326 ENSMUST00000138802 Gm13200 lincRNA Interval_46921 chr13 73416835 73418482 + 0 NA Intergenic Intergenic -54093 ENSMUSG00000021608.15 ENSMUSG00000021608 ENSMUST00000222881 Lpcat1 protein_coding Interval_43485 chr13 31792240 31792981 + 0 NA Intergenic Intergenic -4929 ENSMUSG00000086144.2 ENSMUSG00000086144 ENSMUST00000154678 Gm11379 antisense Interval_145450 chr7 34826411 34826957 + 0 NA Intergenic Intergenic -72872 ENSMUSG00000060402.8 ENSMUSG00000060402 ENSMUST00000205390 Chst8 protein_coding Interval_107685 chr3 110774757 110775382 + 0 NA Intergenic Intergenic 140746 ENSMUSG00000106650.1 ENSMUSG00000106650 ENSMUST00000200424 Gm43404 TEC Interval_29481 chr11 84269787 84271157 + 0 NA intron (ENSMUSG00000020532.18, intron 25 of 55) protein_coding-intron (ENSMUSG00000020532.18, intron 23 of 53) 80879 ENSMUSG00000103122.1 ENSMUSG00000103122 ENSMUST00000194891 Gm37391 TEC Interval_21487 chr10 128868238 128868851 + 0 NA intron (ENSMUSG00000078427.3, intron 10 of 11) protein_coding-intron (ENSMUSG00000078427.3, intron 9 of 10) 23174 ENSMUSG00000025352.6 ENSMUSG00000025352 ENSMUST00000026408 Gdf11 protein_coding Interval_117876 chr4 126829501 126830270 + 0 NA intron (ENSMUSG00000028830.14, intron 3 of 4) protein_coding-intron (ENSMUSG00000028830.14, intron 7 of 20) -5394 ENSMUSG00000028830.14 ENSMUSG00000028830 ENSMUST00000125225 AU040320 protein_coding Interval_47261 chr13 80023675 80024425 + 0 NA intron (ENSMUSG00000100168.2, intron 1 of 2) lincRNA-intron (ENSMUSG00000100168.2, intron 1 of 2) 75368 ENSMUSG00000114287.1 ENSMUSG00000114287 ENSMUST00000224279 Gm5197 processed_pseudogene Interval_11590 chr1 183048270 183048557 + 0 NA Intergenic Intergenic -26193 ENSMUSG00000094807.2 ENSMUSG00000094807 ENSMUST00000178492 Gm24975 miRNA Interval_55948 chr14 103077907 103079705 + 0 NA Intergenic Intergenic 7076 ENSMUSG00000022125.7 ENSMUSG00000022125 ENSMUST00000227117 Cln5 protein_coding Interval_150449 chr7 110726873 110727955 + 0 NA Intergenic Intergenic -14017 ENSMUSG00000109749.1 ENSMUSG00000109749 ENSMUST00000209719 Gm18907 processed_pseudogene Interval_66873 chr16 38242199 38243305 + 0 NA exon (ENSMUSG00000022812.14, exon 11 of 11) protein_coding-exon (ENSMUSG00000022812.14, exon 11 of 11) 34714 ENSMUSG00000022812.14 ENSMUSG00000022812 ENSMUST00000231437 Gsk3b protein_coding Interval_60581 chr15 75379795 75380156 + 0 NA Intergenic Intergenic -2706 ENSMUSG00000102028.1 ENSMUSG00000102028 ENSMUST00000190107 Gm3142 unprocessed_pseudogene Interval_114188 chr4 66523239 66524051 + 0 NA Intergenic Intergenic -20416 ENSMUSG00000065151.1 ENSMUSG00000065151 ENSMUST00000083217 Gm25480 snoRNA Interval_165946 chr9 54863305 54864432 + 0 NA promoter-TSS (ENSMUSG00000032293.8) protein_coding-promoter-TSS (ENSMUSG00000032293.8) -33605 ENSMUSG00000032293.8 ENSMUSG00000032293 ENSMUST00000213482 Ireb2 protein_coding Interval_109324 chr3 138937024 138937222 + 0 NA intron (ENSMUSG00000028149.12, intron 14 of 14) protein_coding-intron (ENSMUSG00000028149.12, intron 13 of 13) 40958 ENSMUSG00000104724.1 ENSMUSG00000104724 ENSMUST00000198292 Gm43162 TEC Interval_26419 chr11 57759465 57759665 + 0 NA intron (ENSMUSG00000020520.14, intron 4 of 11) protein_coding-intron (ENSMUSG00000020520.14, intron 4 of 11) -4862 ENSMUSG00000065806.1 ENSMUSG00000065806 ENSMUST00000083872 n-R5s69 rRNA Interval_118942 chr4 134590177 134590819 + 0 NA intron (ENSMUSG00000037306.13, intron 4 of 8) protein_coding-intron (ENSMUSG00000037306.13, intron 5 of 12) -22647 ENSMUSG00000099289.1 ENSMUSG00000099289 ENSMUST00000185007 Mir6403 miRNA Interval_102814 chr3 31394009 31394453 + 0 NA Intergenic Intergenic 53219 ENSMUSG00000103998.1 ENSMUSG00000103998 ENSMUST00000193926 Gm38025 lincRNA Interval_79012 chr18 23940356 23940561 + 0 NA Intergenic Intergenic -3439 ENSMUSG00000117504.1 ENSMUSG00000117504 ENSMUST00000235052 Gm46611 processed_pseudogene Interval_132459 chr5 145075938 145076535 + 0 NA intron (ENSMUSG00000038770.17, intron 3 of 7) protein_coding-intron (ENSMUSG00000038770.17, intron 3 of 7) 7794 ENSMUSG00000038770.17 ENSMUSG00000038770 ENSMUST00000151196 Kpna7 protein_coding Interval_149181 chr7 96060557 96062765 + 0 NA Intergenic Intergenic 141875 ENSMUSG00000108528.1 ENSMUSG00000108528 ENSMUST00000205708 Gm8319 processed_pseudogene Interval_53889 chr14 63145588 63145854 + 0 NA exon (ENSMUSG00000021939.8, exon 10 of 10) protein_coding-exon (ENSMUSG00000021939.8, exon 10 of 10) 19204 ENSMUSG00000021273.11 ENSMUSG00000021273 ENSMUST00000224267 Fdft1 protein_coding Interval_42433 chr13 13485216 13485578 + 0 NA intron (ENSMUSG00000005397.8, intron 9 of 13) protein_coding-intron (ENSMUSG00000005397.8, intron 9 of 19) -2992 ENSMUSG00000113380.1 ENSMUSG00000113380 ENSMUST00000220813 Gm48682 antisense Interval_115328 chr4 96580464 96581495 + 0 NA intron (ENSMUSG00000015224.10, intron 4 of 5) protein_coding-intron (ENSMUSG00000015224.10, intron 4 of 8) 10599 ENSMUSG00000015224.10 ENSMUSG00000015224 ENSMUST00000126509 Cyp2j9 protein_coding Interval_23053 chr11 19426210 19426978 + 0 NA Intergenic Intergenic 42909 ENSMUSG00000082737.3 ENSMUSG00000082737 ENSMUST00000120961 Gm12026 processed_pseudogene Interval_51654 chr14 31137219 31139262 + 0 NA TTS (ENSMUSG00000042286.13) protein_coding-TTS (ENSMUSG00000042286.13) 3835 ENSMUSG00000071547.4 ENSMUSG00000071547 ENSMUST00000227690 Nt5dc2 protein_coding Interval_28226 chr11 74526420 74527047 + 0 NA intron (ENSMUSG00000038807.19, intron 3 of 25) protein_coding-intron (ENSMUSG00000038807.19, intron 3 of 25) 84182 ENSMUSG00000038807.19 ENSMUSG00000038807 ENSMUST00000145524 Rap1gap2 protein_coding Interval_133029 chr5 149388963 149390504 + 0 NA intron (ENSMUSG00000107271.3, intron 1 of 2) lincRNA-intron (ENSMUSG00000107271.3, intron 3 of 3) -9757 ENSMUSG00000107152.1 ENSMUSG00000107152 ENSMUST00000202495 Gm43152 TEC Interval_164256 chr9 34557814 34558684 + 0 NA intron (ENSMUSG00000032036.15, intron 1 of 15) protein_coding-intron (ENSMUSG00000032036.15, intron 1 of 16) 36494 ENSMUSG00000103552.1 ENSMUSG00000103552 ENSMUST00000194358 Gm38217 TEC Interval_75381 chr17 66268044 66268258 + 0 NA Intergenic Intergenic -31782 ENSMUSG00000117220.1 ENSMUSG00000117220 ENSMUST00000233452 Gm49932 lincRNA Interval_134193 chr6 22538416 22538742 + 0 NA Intergenic Intergenic -84339 ENSMUSG00000107282.1 ENSMUSG00000107282 ENSMUST00000201550 Gm43630 processed_pseudogene Interval_10827 chr1 175699350 175700161 + 0 NA intron (ENSMUSG00000026523.14, intron 1 of 9) protein_coding-intron (ENSMUSG00000026523.14, intron 1 of 27) 1162 ENSMUSG00000026523.14 ENSMUSG00000026523 ENSMUST00000194783 Wdr64 protein_coding Interval_81504 chr18 61235965 61237562 + 0 NA intron (ENSMUSG00000024575.16, intron 4 of 21) protein_coding-intron (ENSMUSG00000024575.16, intron 4 of 21) 23209 ENSMUSG00000091957.3 ENSMUSG00000091957 ENSMUST00000076842 Rps2-ps10 transcribed_processed_pseudogene Interval_166951 chr9 64112567 64113091 + 0 NA Intergenic Intergenic -4343 ENSMUSG00000032401.15 ENSMUSG00000032401 ENSMUST00000132018 Lctl protein_coding Interval_41027 chr12 110685920 110686582 + 0 NA Intergenic Intergenic -3639 ENSMUSG00000056508.6 ENSMUSG00000056508 ENSMUST00000222915 1700001K19Rik protein_coding Interval_102321 chr3 21891602 21892485 + 0 NA Intergenic Intergenic 106425 ENSMUSG00000106321.1 ENSMUSG00000106321 ENSMUST00000196313 Gm43674 lincRNA Interval_16164 chr10 61161826 61162712 + 0 NA Intergenic Intergenic -12993 ENSMUSG00000020096.21 ENSMUSG00000020096 ENSMUST00000126831 Tbata protein_coding Interval_138602 chr6 90324709 90325655 + 0 NA promoter-TSS (ENSMUSG00000056643.5) protein_coding-promoter-TSS (ENSMUSG00000056643.5) 3 ENSMUSG00000056643.5 ENSMUSG00000056643 ENSMUST00000070890 Chst13 protein_coding Interval_127879 chr5 108527126 108527370 + 0 NA intron (ENSMUSG00000033615.9, intron 2 of 3) protein_coding-intron (ENSMUSG00000033615.9, intron 2 of 3) 10069 ENSMUSG00000060730.8 ENSMUSG00000060730 ENSMUST00000136334 Gm10086 processed_pseudogene Interval_162009 chr8 124393649 124394521 + 0 NA promoter-TSS (ENSMUSG00000050751.14) protein_coding-promoter-TSS (ENSMUSG00000050751.14) 36847 ENSMUSG00000064664.1 ENSMUSG00000064664 ENSMUST00000082730 Gm24459 snRNA Interval_61053 chr15 78973109 78973510 + 0 NA promoter-TSS (ENSMUSG00000033088.19) protein_coding-promoter-TSS (ENSMUSG00000033088.19) 25390 ENSMUSG00000033088.19 ENSMUSG00000033088 ENSMUST00000129922 Triobp protein_coding Interval_118802 chr4 133800730 133800972 + 0 NA Intergenic Intergenic -3132 ENSMUSG00000084555.1 ENSMUSG00000084555 ENSMUST00000122606 Gm25270 snRNA Interval_544 chr1 7129832 7130350 + 0 NA intron (ENSMUSG00000051285.17, intron 2 of 5) protein_coding-intron (ENSMUSG00000051285.17, intron 2 of 5) 6495 ENSMUSG00000098201.1 ENSMUSG00000098201 ENSMUST00000182051 Gm26983 processed_pseudogene Interval_97251 chr2 132647021 132648484 + 0 NA intron (ENSMUSG00000074783.10, intron 1 of 2) lincRNA-intron (ENSMUSG00000074783.10, intron 1 of 2) -14490 ENSMUSG00000081445.1 ENSMUSG00000081445 ENSMUST00000121008 Rpl23a-ps4 processed_pseudogene Interval_136031 chr6 50116033 50117606 + 0 NA intron (ENSMUSG00000038388.14, intron 1 of 9) protein_coding-intron (ENSMUSG00000038388.14, intron 1 of 13) 6541 ENSMUSG00000038388.14 ENSMUSG00000038388 ENSMUST00000167319 Mpp6 protein_coding Interval_102080 chr3 16723661 16725369 + 0 NA Intergenic Intergenic 98797 ENSMUSG00000088644.1 ENSMUSG00000088644 ENSMUST00000158019 Gm26485 snRNA Interval_58055 chr15 27485471 27486391 + 0 NA intron (ENSMUSG00000022265.7, intron 1 of 11) protein_coding-intron (ENSMUSG00000022265.7, intron 1 of 11) 6925 ENSMUSG00000115568.1 ENSMUSG00000115568 ENSMUST00000227393 Tiaf2 TEC Interval_5711 chr1 91130662 91130875 + 0 NA Intergenic Intergenic -14321 ENSMUSG00000070732.2 ENSMUSG00000070732 ENSMUST00000185229 Rbm44 protein_coding Interval_109206 chr3 137885130 137885435 + 0 NA exon (ENSMUSG00000074212.7, exon 2 of 8) protein_coding-exon (ENSMUSG00000074212.7, exon 2 of 8) -7156 ENSMUSG00000106629.1 ENSMUSG00000106629 ENSMUST00000198291 Gm40155 antisense Interval_154123 chr8 12895432 12897185 + 0 NA intron (ENSMUSG00000031442.21, intron 2 of 29) protein_coding-intron (ENSMUSG00000031442.21, intron 2 of 29) -12592 ENSMUSG00000079146.2 ENSMUSG00000079146 ENSMUST00000149938 Gm15353 antisense Interval_44407 chr13 44674255 44675510 + 0 NA Intergenic Intergenic 52700 ENSMUSG00000113730.1 ENSMUSG00000113730 ENSMUST00000221956 Gm47805 lincRNA Interval_165697 chr9 51075907 51077533 + 0 NA intron (ENSMUSG00000060594.6, intron 1 of 8) protein_coding-intron (ENSMUSG00000060594.6, intron 1 of 7) 346 ENSMUSG00000060594.6 ENSMUSG00000060594 ENSMUST00000214993 Layn protein_coding Interval_4105 chr1 68405520 68406224 + 0 NA intron (ENSMUSG00000062209.15, intron 3 of 18) protein_coding-intron (ENSMUSG00000062209.15, intron 3 of 27) -20837 ENSMUSG00000080539.1 ENSMUSG00000080539 ENSMUST00000116889 Gm25542 snRNA Interval_161824 chr8 123025460 123025700 + 0 NA intron (ENSMUSG00000035569.17, intron 1 of 2) protein_coding-intron (ENSMUSG00000035569.17, intron 1 of 12) 16697 ENSMUSG00000035569.17 ENSMUSG00000035569 ENSMUST00000212937 Ankrd11 protein_coding Interval_140820 chr6 121613341 121613667 + 0 NA Intergenic Intergenic -12208 ENSMUSG00000107438.1 ENSMUSG00000107438 ENSMUST00000203595 Gm43945 processed_pseudogene Interval_98880 chr2 155750947 155751590 + 0 NA promoter-TSS (ENSMUSG00000027611.12) protein_coding-promoter-TSS (ENSMUSG00000027611.12) 118 ENSMUSG00000027611.12 ENSMUSG00000027611 ENSMUST00000143493 Procr protein_coding Interval_116279 chr4 109241199 109241530 + 0 NA intron (ENSMUSG00000028558.14, intron 3 of 8) protein_coding-intron (ENSMUSG00000028558.14, intron 2 of 7) -3218 ENSMUSG00000028558.14 ENSMUSG00000028558 ENSMUST00000141555 Calr4 protein_coding Interval_158282 chr8 80808263 80808961 + 0 NA intron (ENSMUSG00000031714.9, intron 1 of 10) protein_coding-intron (ENSMUSG00000031714.9, intron 1 of 9) 22272 ENSMUSG00000031714.9 ENSMUSG00000031714 ENSMUST00000211018 Gab1 protein_coding Interval_30518 chr11 94889573 94890715 + 0 NA Intergenic Intergenic -28385 ENSMUSG00000043522.8 ENSMUSG00000043522 ENSMUST00000124176 A430060F13Rik unprocessed_pseudogene Interval_57605 chr15 12783222 12783539 + 0 NA Intergenic Intergenic -18005 ENSMUSG00000115119.1 ENSMUSG00000115119 ENSMUST00000227665 Gm17756 processed_pseudogene Interval_106117 chr3 93369372 93369561 + 0 NA intron (ENSMUSG00000102476.1, intron 3 of 3) lincRNA-intron (ENSMUSG00000102476.1, intron 3 of 3) -19223 ENSMUSG00000106242.1 ENSMUSG00000106242 ENSMUST00000200618 Gm44353 miRNA Interval_26307 chr11 55968707 55969162 + 0 NA intron (ENSMUSG00000086020.1, intron 1 of 4) antisense-intron (ENSMUSG00000086020.1, intron 1 of 4) 72076 ENSMUSG00000037393.2 ENSMUSG00000037393 ENSMUST00000037682 Nmur2 protein_coding Interval_61754 chr15 83845759 83846811 + 0 NA intron (ENSMUSG00000041708.12, intron 2 of 4) protein_coding-intron (ENSMUSG00000041708.12, intron 4 of 6) 54271 ENSMUSG00000041708.12 ENSMUSG00000041708 ENSMUST00000148868 Mpped1 protein_coding Interval_60544 chr15 74784057 74784996 + 0 NA intron (ENSMUSG00000091709.1, intron 1 of 2) antisense-intron (ENSMUSG00000091709.1, intron 1 of 2) 461 ENSMUSG00000091709.1 ENSMUSG00000091709 ENSMUST00000163707 Gm17189 antisense Interval_113113 chr4 48424818 48425025 + 0 NA intron (ENSMUSG00000028344.12, intron 12 of 13) protein_coding-intron (ENSMUSG00000028344.12, intron 14 of 16) 48501 ENSMUSG00000028345.15 ENSMUSG00000028345 ENSMUST00000132911 Tex10 protein_coding Interval_162317 chr8 127028604 127028960 + 0 NA Intergenic Intergenic 11918 ENSMUSG00000110492.1 ENSMUSG00000110492 ENSMUST00000212814 Gm5358 processed_pseudogene Interval_162941 chr9 13608864 13609129 + 0 NA intron (ENSMUSG00000031925.17, intron 1 of 4) protein_coding-intron (ENSMUSG00000031925.17, intron 1 of 4) -12230 ENSMUSG00000093092.1 ENSMUSG00000093092 ENSMUST00000175351 Gm22643 miRNA Interval_100601 chr2 170400094 170401681 + 0 NA intron (ENSMUSG00000013523.13, intron 4 of 4) protein_coding-intron (ENSMUSG00000013523.13, intron 4 of 12) -4294 ENSMUSG00000086970.1 ENSMUSG00000086970 ENSMUST00000133586 Bcas1os1 antisense Interval_162803 chr9 9238121 9239675 + 0 NA promoter-TSS (ENSMUSG00000050730.17) protein_coding-promoter-TSS (ENSMUSG00000050730.17) 2 ENSMUSG00000050730.17 ENSMUSG00000050730 ENSMUST00000183182 Arhgap42 protein_coding Interval_36602 chr12 51276330 51276540 + 0 NA Intergenic Intergenic -21052 ENSMUSG00000046620.4 ENSMUSG00000046620 ENSMUST00000062226 Rps11-ps4 processed_pseudogene Interval_52184 chr14 38992033 38992237 + 0 NA intron (ENSMUSG00000041014.17, intron 2 of 8) protein_coding-intron (ENSMUSG00000041014.17, intron 2 of 9) -92191 ENSMUSG00000098723.1 ENSMUSG00000098723 ENSMUST00000184893 Gm27332 miRNA Interval_61018 chr15 78806394 78807119 + 0 NA Intergenic Intergenic -4087 ENSMUSG00000033170.14 ENSMUSG00000033170 ENSMUST00000071115 Card10 protein_coding Interval_81296 chr18 57608391 57608769 + 0 NA intron (ENSMUSG00000058925.11, intron 5 of 5) protein_coding-intron (ENSMUSG00000058925.11, intron 5 of 6) 30005 ENSMUSG00000118322.1 ENSMUSG00000118322 ENSMUST00000236285 2210409D07Rik antisense Interval_30951 chr11 97380329 97380593 + 0 NA intron (ENSMUSG00000038485.6, intron 6 of 9) protein_coding-intron (ENSMUSG00000038485.6, intron 6 of 9) 18026 ENSMUSG00000038485.6 ENSMUSG00000038485 ENSMUST00000149212 Socs7 protein_coding Interval_34318 chr12 3359056 3359607 + 0 NA Intergenic Intergenic -2178 ENSMUSG00000097429.1 ENSMUSG00000097429 ENSMUST00000180719 Gm26520 lincRNA Interval_147931 chr7 75688333 75688560 + 0 NA intron (ENSMUSG00000066406.16, intron 8 of 9) protein_coding-intron (ENSMUSG00000066406.16, intron 14 of 36) -2500 ENSMUSG00000066406.16 ENSMUSG00000066406 ENSMUST00000208009 Akap13 protein_coding Interval_112778 chr4 44940084 44940614 + 0 NA Intergenic Intergenic -3404 ENSMUSG00000084854.1 ENSMUSG00000084854 ENSMUST00000154177 Gm12678 lincRNA Interval_127705 chr5 106832847 106833226 + 0 NA Intergenic Intergenic 46662 ENSMUSG00000098703.1 ENSMUSG00000098703 ENSMUST00000183903 Gm27527 miRNA Interval_158839 chr8 87082373 87082671 + 0 NA Intergenic Intergenic -10785 ENSMUSG00000098854.1 ENSMUSG00000098854 ENSMUST00000184692 Gm5118 lincRNA Interval_24084 chr11 30096104 30096772 + 0 NA Intergenic Intergenic -9956 ENSMUSG00000101872.1 ENSMUSG00000101872 ENSMUST00000186216 Gm29237 antisense Interval_140085 chr6 113962787 113963258 + 0 NA intron (ENSMUSG00000030302.16, intron 2 of 3) protein_coding-intron (ENSMUSG00000030302.16, intron 2 of 21) 25283 ENSMUSG00000087053.1 ENSMUSG00000087053 ENSMUST00000147045 Gm15082 antisense Interval_107270 chr3 105114011 105114902 + 0 NA Intergenic Intergenic 47612 ENSMUSG00000051788.4 ENSMUSG00000051788 ENSMUST00000070584 4930564D02Rik protein_coding Interval_67345 chr16 46787217 46787867 + 0 NA Intergenic Intergenic 249707 ENSMUSG00000116915.1 ENSMUSG00000116915 ENSMUST00000231611 Gm17900 processed_pseudogene Interval_105470 chr3 86845146 86846014 + 0 NA intron (ENSMUSG00000028078.14, intron 2 of 15) protein_coding-intron (ENSMUSG00000028078.14, intron 2 of 15) -18912 ENSMUSG00000104074.1 ENSMUSG00000104074 ENSMUST00000195159 Gm37025 processed_pseudogene Interval_65157 chr16 20234210 20234624 + 0 NA exon (ENSMUSG00000041205.8, exon 3 of 3) protein_coding-exon (ENSMUSG00000041205.8, exon 3 of 3) -6610 ENSMUSG00000116913.1 ENSMUSG00000116913 ENSMUST00000231237 Gm49566 antisense Interval_39977 chr12 100201909 100202136 + 0 NA intron (ENSMUSG00000001175.16, intron 1 of 5) protein_coding-intron (ENSMUSG00000001175.16, intron 1 of 5) 2493 ENSMUSG00000001175.16 ENSMUSG00000001175 ENSMUST00000127300 Calm1 protein_coding Interval_79799 chr18 35171811 35172047 + 0 NA intron (ENSMUSG00000037815.7, intron 3 of 3) protein_coding-intron (ENSMUSG00000037815.7, intron 3 of 17) 43095 ENSMUSG00000071862.3 ENSMUSG00000071862 ENSMUST00000236680 Lrrtm2 protein_coding Interval_39560 chr12 90634171 90636182 + 0 NA Intergenic Intergenic -46531 ENSMUSG00000114032.1 ENSMUSG00000114032 ENSMUST00000222569 Gm2139 processed_pseudogene Interval_109540 chr3 144242188 144242523 + 0 NA Intergenic Intergenic -39392 ENSMUSG00000028266.17 ENSMUSG00000028266 ENSMUST00000124891 Lmo4 protein_coding Interval_116803 chr4 117360121 117362562 + 0 NA intron (ENSMUSG00000028677.19, intron 2 of 2) protein_coding-intron (ENSMUSG00000028677.19, intron 2 of 14) 65197 ENSMUSG00000085749.1 ENSMUSG00000085749 ENSMUST00000139618 Gm12843 antisense Interval_119692 chr4 139258559 139259347 + 0 NA intron (ENSMUSG00000028745.18, intron 3 of 9) protein_coding-intron (ENSMUSG00000028745.18, intron 3 of 8) 51712 ENSMUSG00000028744.15 ENSMUSG00000028744 ENSMUST00000141007 Pqlc2 protein_coding Interval_87528 chr19 53262029 53262781 + 0 NA intron (ENSMUSG00000118314.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000118314.1, intron 1 of 2) -4226 ENSMUSG00000118350.1 ENSMUSG00000118350 ENSMUST00000237548 Gm36339 processed_pseudogene Interval_1209 chr1 17123024 17124920 + 0 NA promoter-TSS (ENSMUSG00000100110.1) lincRNA-promoter-TSS (ENSMUSG00000100110.1) -775 ENSMUSG00000100110.1 ENSMUSG00000100110 ENSMUST00000188872 Gm28783 lincRNA Interval_22072 chr11 6160513 6161187 + 0 NA intron (ENSMUSG00000053838.14, intron 1 of 2) protein_coding-intron (ENSMUSG00000053838.14, intron 2 of 5) 12186 ENSMUSG00000083022.1 ENSMUSG00000083022 ENSMUST00000117476 Rps15a-ps6 processed_pseudogene Interval_84202 chr19 8726807 8728574 + 0 NA Intergenic Intergenic 1824 ENSMUSG00000065087.1 ENSMUSG00000065087 ENSMUST00000083153 Snord22 snoRNA Interval_55663 chr14 98589853 98590325 + 0 NA Intergenic Intergenic -34101 ENSMUSG00000096444.1 ENSMUSG00000096444 ENSMUST00000180098 Gm26139 snRNA Interval_22926 chr11 17474857 17476544 + 0 NA Intergenic Intergenic -72586 ENSMUSG00000087833.1 ENSMUSG00000087833 ENSMUST00000157208 Gm23959 misc_RNA Interval_146738 chr7 49831815 49832210 + 0 NA intron (ENSMUSG00000030505.17, intron 13 of 15) protein_coding-intron (ENSMUSG00000030505.17, intron 13 of 15) 17810 ENSMUSG00000109154.1 ENSMUSG00000109154 ENSMUST00000208559 Gm44822 TEC Interval_67777 chr16 57120973 57122352 + 0 NA promoter-TSS (ENSMUSG00000022752.9) protein_coding-promoter-TSS (ENSMUSG00000022752.9) -31598 ENSMUSG00000022752.9 ENSMUSG00000022752 ENSMUST00000231901 Tomm70a protein_coding Interval_167292 chr9 67077331 67078526 + 0 NA Intergenic Intergenic -24372 ENSMUSG00000111825.1 ENSMUSG00000111825 ENSMUST00000213227 Gm10646 lincRNA Interval_125807 chr5 74311323 74311724 + 0 NA intron (ENSMUSG00000062110.14, intron 5 of 7) protein_coding-intron (ENSMUSG00000062110.14, intron 5 of 8) 5511 ENSMUSG00000080700.2 ENSMUSG00000080700 ENSMUST00000119196 Gm15981 transcribed_processed_pseudogene Interval_34000 chr11 119919771 119920741 + 0 NA TTS (ENSMUSG00000025371.12) protein_coding-TTS (ENSMUSG00000025371.12) 6241 ENSMUSG00000025371.12 ENSMUSG00000025371 ENSMUST00000137055 Chmp6 protein_coding Interval_28169 chr11 73415215 73415451 + 0 NA Intergenic Intergenic -1925 ENSMUSG00000108673.1 ENSMUSG00000108673 ENSMUST00000206690 Gm44922 unprocessed_pseudogene Interval_166775 chr9 62549950 62551249 + 0 NA Intergenic Intergenic 35570 ENSMUSG00000084540.1 ENSMUSG00000084540 ENSMUST00000122591 n-R5s84 rRNA Interval_172291 chrX 12495181 12495450 + 0 NA Intergenic Intergenic -38085 ENSMUSG00000081461.3 ENSMUSG00000081461 ENSMUST00000119630 Rpl30-ps11 processed_pseudogene Interval_137370 chr6 71752299 71753447 + 0 NA intron (ENSMUSG00000052852.8, intron 1 of 8) protein_coding-intron (ENSMUSG00000052852.8, intron 1 of 6) -37795 ENSMUSG00000108802.1 ENSMUSG00000108802 ENSMUST00000206120 Gm44769 TEC Interval_12026 chr1 188945258 188945574 + 0 NA intron (ENSMUSG00000026609.15, intron 64 of 70) protein_coding-intron (ENSMUSG00000026609.15, intron 64 of 70) 62425 ENSMUSG00000026608.13 ENSMUSG00000026608 ENSMUST00000193273 Kctd3 protein_coding Interval_43266 chr13 28301284 28301622 + 0 NA intron (ENSMUSG00000113418.1, intron 1 of 2) unprocessed_pseudogene-intron (ENSMUSG00000113418.1, intron 1 of 2) 15884 ENSMUSG00000113418.1 ENSMUSG00000113418 ENSMUST00000222053 Gm47172 unprocessed_pseudogene Interval_55096 chr14 78019690 78020717 + 0 NA intron (ENSMUSG00000115517.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000115517.1, intron 1 of 2) 475 ENSMUSG00000115517.1 ENSMUSG00000115517 ENSMUST00000226503 Gm48954 lincRNA Interval_18624 chr10 88625108 88625302 + 0 NA Intergenic Intergenic -16174 ENSMUSG00000112231.1 ENSMUSG00000112231 ENSMUST00000219481 Gm8435 processed_pseudogene Interval_110605 chr4 4584567 4584907 + 0 NA Intergenic Intergenic -56018 ENSMUSG00000085155.3 ENSMUSG00000085155 ENSMUST00000136880 Gm11780 processed_pseudogene Interval_90164 chr2 28666771 28667755 + 0 NA exon (ENSMUSG00000026812.16, exon 7 of 7) protein_coding-exon (ENSMUSG00000026812.16, exon 7 of 7) 26035 ENSMUSG00000026812.16 ENSMUSG00000026812 ENSMUST00000139642 Tsc1 protein_coding Interval_110846 chr4 8931260 8931812 + 0 NA Intergenic Intergenic -9723 ENSMUSG00000083786.1 ENSMUSG00000083786 ENSMUST00000119493 Rps18-ps2 processed_pseudogene Interval_57976 chr15 25815976 25816217 + 0 NA Intergenic Intergenic 24515 ENSMUSG00000115593.1 ENSMUSG00000115593 ENSMUST00000228649 Gm4824 processed_pseudogene Interval_92738 chr2 64893100 64893649 + 0 NA Intergenic Intergenic -24786 ENSMUSG00000084104.1 ENSMUSG00000084104 ENSMUST00000120849 Gm13578 processed_pseudogene Interval_73184 chr17 35349852 35351020 + 0 NA Intergenic Intergenic 5437 ENSMUSG00000091705.8 ENSMUSG00000091705 ENSMUST00000173115 H2-Q2 protein_coding Interval_141022 chr6 124443122 124444385 + 0 NA intron (ENSMUSG00000008153.12, intron 1 of 1) protein_coding-intron (ENSMUSG00000008153.12, intron 12 of 17) -10253 ENSMUSG00000008153.12 ENSMUSG00000008153 ENSMUST00000150774 Clstn3 protein_coding Interval_3896 chr1 64575545 64575911 + 0 NA promoter-TSS (ENSMUSG00000025958.14) protein_coding-promoter-TSS (ENSMUSG00000025958.14) -660 ENSMUSG00000025958.14 ENSMUSG00000025958 ENSMUST00000190979 Creb1 protein_coding Interval_118260 chr4 129876954 129878066 + 0 NA Intergenic Intergenic -18063 ENSMUSG00000065768.1 ENSMUSG00000065768 ENSMUST00000083834 Gm23845 snRNA Interval_49020 chr13 106957111 106957557 + 0 NA intron (ENSMUSG00000021692.9, intron 9 of 9) protein_coding-intron (ENSMUSG00000021692.9, intron 11 of 11) 10179 ENSMUSG00000021692.9 ENSMUSG00000021692 ENSMUST00000223870 Dimt1 protein_coding Interval_108992 chr3 134145147 134145371 + 0 NA intron (ENSMUSG00000097911.2, intron 1 of 2) antisense-intron (ENSMUSG00000097911.2, intron 1 of 2) 1849 ENSMUSG00000106130.1 ENSMUSG00000106130 ENSMUST00000197960 Gm44361 miRNA Interval_70176 chr17 5977062 5978563 + 0 NA intron (ENSMUSG00000023805.17, intron 1 of 16) protein_coding-intron (ENSMUSG00000023805.17, intron 1 of 25) -30222 ENSMUSG00000023805.17 ENSMUSG00000023805 ENSMUST00000126881 Synj2 protein_coding Interval_25371 chr11 46813985 46814928 + 0 NA intron (ENSMUSG00000055546.6, intron 1 of 8) protein_coding-intron (ENSMUSG00000055546.6, intron 1 of 8) 3656 ENSMUSG00000055546.6 ENSMUSG00000055546 ENSMUST00000068877 Timd4 protein_coding Interval_104715 chr3 69678286 69678642 + 0 NA Intergenic Intergenic -7003 ENSMUSG00000087848.1 ENSMUSG00000087848 ENSMUST00000157223 Gm25621 rRNA Interval_81586 chr18 61899251 61899495 + 0 NA intron (ENSMUSG00000032735.15, intron 2 of 23) protein_coding-intron (ENSMUSG00000032735.15, intron 1 of 22) 12450 ENSMUSG00000032735.15 ENSMUSG00000032735 ENSMUST00000049378 Ablim3 protein_coding Interval_82123 chr18 67856760 67857245 + 0 NA promoter-TSS (ENSMUSG00000024542.9) protein_coding-promoter-TSS (ENSMUSG00000024542.9) -13325 ENSMUSG00000024542.9 ENSMUSG00000024542 ENSMUST00000225589 Cep192 protein_coding Interval_62349 chr15 90811877 90812085 + 0 NA Intergenic Intergenic -47325 ENSMUSG00000067870.5 ENSMUSG00000067870 ENSMUST00000181935 Rpl31-ps8 processed_pseudogene Interval_8518 chr1 140531320 140532470 + 0 NA intron (ENSMUSG00000052726.16, intron 20 of 27) protein_coding-intron (ENSMUSG00000052726.16, intron 18 of 26) 124509 ENSMUSG00000102368.1 ENSMUSG00000102368 ENSMUST00000193820 4930590L20Rik antisense Interval_87080 chr19 46010931 46011797 + 0 NA intron (ENSMUSG00000097690.2, intron 1 of 1) bidirectional_promoter_lncRNA-intron (ENSMUSG00000097690.2, intron 1 of 1) 7856 ENSMUSG00000074811.3 ENSMUSG00000074811 ENSMUST00000099393 Hps6 protein_coding Interval_136962 chr6 65098771 65099546 + 0 NA intron (ENSMUSG00000029920.9, intron 16 of 21) protein_coding-intron (ENSMUSG00000029920.9, intron 18 of 23) 23769 ENSMUSG00000029919.5 ENSMUSG00000029919 ENSMUST00000170252 Hpgds protein_coding Interval_125700 chr5 73354485 73354738 + 0 NA Intergenic Intergenic -16053 ENSMUSG00000029153.11 ENSMUSG00000029153 ENSMUST00000200821 Ociad2 protein_coding Interval_14013 chr10 25466334 25466801 + 0 NA promoter-TSS (ENSMUSG00000019978.16) protein_coding-promoter-TSS (ENSMUSG00000019978.16) -28056 ENSMUSG00000019978.16 ENSMUSG00000019978 ENSMUST00000219201 Epb41l2 protein_coding Interval_24998 chr11 42778784 42779514 + 0 NA Intergenic Intergenic -118346 ENSMUSG00000084627.1 ENSMUSG00000084627 ENSMUST00000122678 Gm25543 misc_RNA Interval_16101 chr10 60741975 60743436 + 0 NA intron (ENSMUSG00000020100.15, intron 2 of 5) protein_coding-intron (ENSMUSG00000020100.15, intron 2 of 5) 10078 ENSMUSG00000020100.15 ENSMUSG00000020100 ENSMUST00000144989 Slc29a3 protein_coding Interval_54686 chr14 73308630 73308913 + 0 NA intron (ENSMUSG00000022105.6, intron 2 of 26) protein_coding-intron (ENSMUSG00000022105.6, intron 2 of 26) -26321 ENSMUSG00000115573.1 ENSMUSG00000115573 ENSMUST00000226676 Gm49131 processed_pseudogene Interval_69614 chr16 94617767 94619466 + 0 NA intron (ENSMUSG00000022897.15, intron 2 of 5) protein_coding-intron (ENSMUSG00000022897.15, intron 2 of 11) -1761 ENSMUSG00000081692.1 ENSMUSG00000081692 ENSMUST00000119372 Gm15971 processed_pseudogene Interval_141333 chr6 127348779 127350938 + 0 NA Intergenic Intergenic 18621 ENSMUSG00000107243.1 ENSMUSG00000107243 ENSMUST00000202011 Gm43631 processed_pseudogene Interval_88631 chr2 7921775 7922503 + 0 NA Intergenic Intergenic -140731 ENSMUSG00000085070.1 ENSMUSG00000085070 ENSMUST00000141649 Gm13211 lincRNA Interval_3778 chr1 63048273 63048552 + 0 NA exon (ENSMUSG00000040865.15, exon 11 of 11) protein_coding-exon (ENSMUSG00000040865.15, exon 11 of 11) 10198 ENSMUSG00000081617.1 ENSMUSG00000081617 ENSMUST00000122045 Rps13-ps7 processed_pseudogene Interval_148300 chr7 80370449 80371731 + 0 NA promoter-TSS (ENSMUSG00000038886.10) protein_coding-promoter-TSS (ENSMUSG00000038886.10) -11179 ENSMUSG00000038886.10 ENSMUSG00000038886 ENSMUST00000205436 Man2a2 protein_coding Interval_106876 chr3 101457755 101457996 + 0 NA exon (ENSMUSG00000042035.11, exon 10 of 11) protein_coding-exon (ENSMUSG00000042035.11, exon 10 of 11) -32222 ENSMUSG00000106137.1 ENSMUSG00000106137 ENSMUST00000196233 Gm42538 antisense Interval_102721 chr3 30573092 30574286 + 0 NA Intergenic Intergenic -9446 ENSMUSG00000102256.1 ENSMUSG00000102256 ENSMUST00000191792 Gm38258 lincRNA Interval_116039 chr4 107161373 107161718 + 0 NA intron (ENSMUSG00000028619.15, intron 2 of 3) protein_coding-intron (ENSMUSG00000028619.15, intron 3 of 4) 16663 ENSMUSG00000028619.15 ENSMUSG00000028619 ENSMUST00000131474 Tceanc2 protein_coding Interval_166988 chr9 64323078 64323384 + 0 NA TTS (ENSMUSG00000032396.17) protein_coding-TTS (ENSMUSG00000032396.17) 18026 ENSMUSG00000032396.17 ENSMUSG00000032396 ENSMUST00000128129 Dis3l protein_coding Interval_129846 chr5 122725005 122726807 + 0 NA TTS (ENSMUSG00000029470.15) protein_coding-TTS (ENSMUSG00000029470.15) 18326 ENSMUSG00000029470.15 ENSMUSG00000029470 ENSMUST00000139712 P2rx4 protein_coding Interval_67128 chr16 43698350 43699448 + 0 NA intron (ENSMUSG00000116684.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000116684.1, intron 1 of 2) -9503 ENSMUSG00000116565.1 ENSMUSG00000116565 ENSMUST00000231991 Gm49734 processed_pseudogene Interval_164503 chr9 37512254 37512649 + 0 NA intron (ENSMUSG00000042138.9, intron 2 of 2) protein_coding-intron (ENSMUSG00000042138.9, intron 1 of 3) 14682 ENSMUSG00000110993.1 ENSMUSG00000110993 ENSMUST00000214783 Gm47963 TEC Interval_91457 chr2 38999745 39000677 + 0 NA TTS (ENSMUSG00000035295.10) protein_coding-TTS (ENSMUSG00000035295.10) 1879 ENSMUSG00000035295.10 ENSMUSG00000035295 ENSMUST00000124062 Wdr38 protein_coding Interval_69792 chr16 96369091 96370055 + 0 NA intron (ENSMUSG00000117081.1, intron 2 of 8) protein_coding-intron (ENSMUSG00000000159.16, intron 2 of 8) 7779 ENSMUSG00000117081.1 ENSMUSG00000117081 ENSMUST00000113795 Gm49948 protein_coding Interval_82665 chr18 75783294 75783697 + 0 NA Intergenic Intergenic 2463 ENSMUSG00000097302.1 ENSMUSG00000097302 ENSMUST00000180957 1700034B16Rik lincRNA Interval_138985 chr6 94028203 94028684 + 0 NA intron (ENSMUSG00000045095.16, intron 1 of 24) protein_coding-intron (ENSMUSG00000045095.16, intron 1 of 21) -115939 ENSMUSG00000045095.16 ENSMUSG00000045095 ENSMUST00000203034 Magi1 protein_coding Interval_31540 chr11 101253377 101254266 + 0 NA promoter-TSS (ENSMUSG00000078656.11) protein_coding-promoter-TSS (ENSMUSG00000078656.11) 91 ENSMUSG00000078656.11 ENSMUSG00000078656 ENSMUST00000123529 Vps25 protein_coding Interval_36473 chr12 45487909 45488324 + 0 NA intron (ENSMUSG00000112054.1, intron 3 of 4) lincRNA-intron (ENSMUSG00000112054.1, intron 3 of 4) 21820 ENSMUSG00000112054.1 ENSMUSG00000112054 ENSMUST00000219610 Gm33680 lincRNA Interval_23009 chr11 18911111 18911824 + 0 NA intron (ENSMUSG00000020160.18, intron 6 of 9) protein_coding-intron (ENSMUSG00000020160.18, intron 8 of 12) -21627 ENSMUSG00000104244.1 ENSMUSG00000104244 ENSMUST00000195805 2900018N21Rik TEC Interval_160451 chr8 109587014 109587611 + 0 NA Intergenic Intergenic -8302 ENSMUSG00000031722.10 ENSMUSG00000031722 ENSMUST00000212018 Hp protein_coding Interval_154630 chr8 22148087 22148891 + 0 NA exon (ENSMUSG00000031478.16, exon 9 of 16) protein_coding-exon (ENSMUSG00000031478.16, exon 9 of 16) 14005 ENSMUSG00000031478.16 ENSMUSG00000031478 ENSMUST00000151371 Nek3 protein_coding Interval_133328 chr6 3280038 3280572 + 0 NA Intergenic Intergenic 2752 ENSMUSG00000106945.1 ENSMUSG00000106945 ENSMUST00000202023 Gm42961 processed_pseudogene Interval_56886 chr14 122834191 122835307 + 0 NA intron (ENSMUSG00000041625.15, intron 3 of 3) protein_coding-intron (ENSMUSG00000041650.15, intron 21 of 23) -78326 ENSMUSG00000075463.3 ENSMUSG00000075463 ENSMUST00000162218 4930594M22Rik processed_transcript Interval_11252 chr1 180480257 180480837 + 0 NA intron (ENSMUSG00000053963.7, intron 1 of 2) protein_coding-intron (ENSMUSG00000053963.7, intron 1 of 3) -3460 ENSMUSG00000104210.1 ENSMUSG00000104210 ENSMUST00000191641 Gm37984 TEC Interval_37805 chr12 72091561 72092669 + 0 NA intron (ENSMUSG00000005078.16, intron 1 of 2) protein_coding-intron (ENSMUSG00000005078.16, intron 3 of 6) 2410 ENSMUSG00000005078.16 ENSMUSG00000005078 ENSMUST00000145752 Jkamp protein_coding Interval_82369 chr18 73182603 73183390 + 0 NA Intergenic Intergenic -261906 ENSMUSG00000118316.1 ENSMUSG00000118316 ENSMUST00000236243 Gm31908 lincRNA Interval_82962 chr18 80028993 80030325 + 0 NA TTS (ENSMUSG00000117933.1) processed_pseudogene-TTS (ENSMUSG00000117933.1) 303 ENSMUSG00000117933.1 ENSMUSG00000117933 ENSMUST00000237994 Gm50193 processed_pseudogene Interval_96867 chr2 129113205 129113683 + 0 NA intron (ENSMUSG00000027395.15, intron 8 of 14) protein_coding-intron (ENSMUSG00000027395.15, intron 8 of 12) -8267 ENSMUSG00000027395.15 ENSMUSG00000027395 ENSMUST00000147727 Polr1b protein_coding Interval_172018 chr9 123528701 123530299 + 0 NA promoter-TSS (ENSMUSG00000025240.10) protein_coding-promoter-TSS (ENSMUSG00000025240.10) -259 ENSMUSG00000025240.10 ENSMUSG00000025240 ENSMUST00000215004 Sacm1l protein_coding Interval_142528 chr6 143092168 143093022 + 0 NA intron (ENSMUSG00000030279.15, intron 2 of 24) protein_coding-intron (ENSMUSG00000030279.15, intron 2 of 24) 7495 ENSMUSG00000030279.15 ENSMUSG00000030279 ENSMUST00000205079 C2cd5 protein_coding Interval_157810 chr8 73667381 73668033 + 0 NA Intergenic Intergenic -26202 ENSMUSG00000076199.1 ENSMUSG00000076199 ENSMUST00000102244 Gm23255 miRNA Interval_63395 chr15 100792264 100792979 + 0 NA intron (ENSMUSG00000023032.12, intron 10 of 23) protein_coding-intron (ENSMUSG00000023032.12, intron 11 of 24) -10127 ENSMUSG00000023032.12 ENSMUSG00000023032 ENSMUST00000162744 Slc4a8 protein_coding Interval_155387 chr8 33137499 33138160 + 0 NA Intergenic Intergenic 54467 ENSMUSG00000083557.1 ENSMUSG00000083557 ENSMUST00000119347 Gm6877 processed_pseudogene Interval_13056 chr10 10688960 10689958 + 0 NA exon (ENSMUSG00000019828.13, exon 10 of 10) protein_coding-exon (ENSMUSG00000019828.13, exon 10 of 10) 8111 ENSMUSG00000078481.1 ENSMUSG00000078481 ENSMUST00000105564 Gm10944 protein_coding Interval_84002 chr19 6041900 6042595 + 0 NA Intergenic Intergenic 2575 ENSMUSG00000094281.1 ENSMUSG00000094281 ENSMUST00000178853 Gm8034 processed_pseudogene Interval_8490 chr1 140066006 140066224 + 0 NA Intergenic Intergenic -17086 ENSMUSG00000103691.1 ENSMUSG00000103691 ENSMUST00000195133 Gm38019 processed_pseudogene Interval_119960 chr4 141122987 141123343 + 0 NA intron (ENSMUSG00000040842.17, intron 1 of 3) protein_coding-intron (ENSMUSG00000040842.17, intron 1 of 2) 7505 ENSMUSG00000097620.7 ENSMUSG00000097620 ENSMUST00000181450 4921514A10Rik antisense Interval_124237 chr5 41852896 41853959 + 0 NA exon (ENSMUSG00000107259.1, exon 1 of 1) processed_pseudogene-exon (ENSMUSG00000107259.1, exon 1 of 1) 774 ENSMUSG00000107259.1 ENSMUSG00000107259 ENSMUST00000201122 Gm5298 processed_pseudogene Interval_147541 chr7 68190019 68190275 + 0 NA exon (ENSMUSG00000005533.10, exon 10 of 21) protein_coding-exon (ENSMUSG00000005533.10, exon 10 of 21) -21691 ENSMUSG00000005533.10 ENSMUSG00000005533 ENSMUST00000208871 Igf1r protein_coding Interval_146309 chr7 45267830 45268487 + 0 NA promoter-TSS (ENSMUSG00000094152.5) protein_coding-promoter-TSS (ENSMUSG00000094152.5) -9355 ENSMUSG00000070568.12 ENSMUSG00000070568 ENSMUST00000210733 Slc6a21 protein_coding Interval_143716 chr7 15895894 15896507 + 0 NA promoter-TSS (ENSMUSG00000074365.13) protein_coding-promoter-TSS (ENSMUSG00000074365.13) -1206 ENSMUSG00000074365.13 ENSMUSG00000074365 ENSMUST00000171280 Crxos protein_coding Interval_75677 chr17 70583001 70583317 + 0 NA intron (ENSMUSG00000003279.17, intron 1 of 4) protein_coding-intron (ENSMUSG00000003279.17, intron 6 of 14) 172423 ENSMUSG00000097282.1 ENSMUSG00000097282 ENSMUST00000181546 5031415H12Rik antisense Interval_167924 chr9 74339478 74340655 + 0 NA Intergenic Intergenic -22544 ENSMUSG00000084725.2 ENSMUSG00000084725 ENSMUST00000122776 Gm24141 snRNA Interval_128920 chr5 116101534 116102087 + 0 NA Intergenic Intergenic -18564 ENSMUSG00000079278.2 ENSMUSG00000079278 ENSMUST00000239438 Tmem233 protein_coding Interval_124071 chr5 38038644 38039866 + 0 NA promoter-TSS (ENSMUSG00000029125.14) protein_coding-promoter-TSS (ENSMUSG00000029125.14) -27 ENSMUSG00000029125.14 ENSMUSG00000029125 ENSMUST00000141286 Stx18 protein_coding Interval_101133 chr2 178263784 178265773 + 0 NA intron (ENSMUSG00000027525.18, intron 3 of 12) protein_coding-intron (ENSMUSG00000027525.18, intron 3 of 12) -62778 ENSMUSG00000027525.18 ENSMUSG00000027525 ENSMUST00000133267 Phactr3 protein_coding Interval_48932 chr13 105053680 105055396 + 0 NA exon (ENSMUSG00000021719.9, exon 1 of 6) protein_coding-exon (ENSMUSG00000021719.9, exon 1 of 6) 392 ENSMUSG00000021719.9 ENSMUSG00000021719 ENSMUST00000063551 Rgs7bp protein_coding Interval_145873 chr7 40902448 40902904 + 0 NA exon (ENSMUSG00000039257.11, exon 5 of 6) protein_coding-exon (ENSMUSG00000039257.11, exon 5 of 6) 3344 ENSMUSG00000039257.11 ENSMUSG00000039257 ENSMUST00000186352 Vstm2b protein_coding Interval_170932 chr9 112450099 112450582 + 0 NA intron (ENSMUSG00000110876.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000110876.1, intron 1 of 1) 11290 ENSMUSG00000110876.1 ENSMUSG00000110876 ENSMUST00000216779 4933411E02Rik lincRNA Interval_76142 chr17 75529404 75529679 + 0 NA TTS (ENSMUSG00000071042.12) protein_coding-TTS (ENSMUSG00000071042.12) 22332 ENSMUSG00000002017.10 ENSMUSG00000002017 ENSMUST00000141969 Fam98a protein_coding Interval_47936 chr13 94495206 94495514 + 0 NA intron (ENSMUSG00000021686.6, intron 5 of 11) protein_coding-intron (ENSMUSG00000021686.6, intron 21 of 26) -21802 ENSMUSG00000084423.1 ENSMUSG00000084423 ENSMUST00000122474 Gm25109 miRNA Interval_75084 chr17 63148052 63148490 + 0 NA intron (ENSMUSG00000023965.13, intron 4 of 5) protein_coding-intron (ENSMUSG00000023965.13, intron 7 of 8) -51271 ENSMUSG00000089586.1 ENSMUSG00000089586 ENSMUST00000158961 Gm25348 rRNA Interval_130764 chr5 130244364 130244586 + 0 NA TTS (ENSMUSG00000053094.15) protein_coding-TTS (ENSMUSG00000053094.15) 11003 ENSMUSG00000025337.10 ENSMUSG00000025337 ENSMUST00000201598 Sbds protein_coding Interval_79722 chr18 34724430 34725005 + 0 NA Intergenic Intergenic -4330 ENSMUSG00000024366.8 ENSMUSG00000024366 ENSMUST00000025224 Gfra3 protein_coding Interval_81745 chr18 64342624 64342958 + 0 NA intron (ENSMUSG00000045991.19, intron 1 of 1) protein_coding-intron (ENSMUSG00000045991.19, intron 1 of 1) 2771 ENSMUSG00000045991.19 ENSMUSG00000045991 ENSMUST00000175965 Onecut2 protein_coding Interval_117685 chr4 125538417 125538723 + 0 NA intron (ENSMUSG00000001985.9, intron 1 of 15) protein_coding-intron (ENSMUSG00000001985.9, intron 1 of 15) 33821 ENSMUSG00000094403.1 ENSMUSG00000094403 ENSMUST00000102081 Mir692-2 miRNA Interval_30836 chr11 96786665 96787271 + 0 NA Intergenic Intergenic -2207 ENSMUSG00000018666.13 ENSMUSG00000018666 ENSMUST00000079702 Cbx1 protein_coding Interval_108796 chr3 131521055 131521738 + 0 NA Intergenic Intergenic -29985 ENSMUSG00000050931.7 ENSMUSG00000050931 ENSMUST00000200431 Sgms2 protein_coding Interval_31257 chr11 99162971 99163932 + 0 NA Intergenic Intergenic -8374 ENSMUSG00000037944.8 ENSMUSG00000037944 ENSMUST00000103134 Ccr7 protein_coding Interval_87039 chr19 45746083 45747756 + 0 NA TTS (ENSMUSG00000056209.7) protein_coding-TTS (ENSMUSG00000056209.7) -2589 ENSMUSG00000087367.1 ENSMUSG00000087367 ENSMUST00000133963 Gm15491 antisense Interval_126096 chr5 77357465 77360591 + 0 NA intron (ENSMUSG00000036256.13, intron 1 of 4) protein_coding-intron (ENSMUSG00000036256.13, intron 1 of 4) 18660 ENSMUSG00000029250.5 ENSMUSG00000029250 ENSMUST00000150191 Polr2b protein_coding Interval_94197 chr2 85021998 85022473 + 0 NA intron (ENSMUSG00000027071.14, intron 6 of 10) protein_coding-intron (ENSMUSG00000027071.14, intron 7 of 11) 11075 ENSMUSG00000027071.14 ENSMUSG00000027071 ENSMUST00000127839 P2rx3 protein_coding Interval_107477 chr3 107968824 107969456 + 0 NA exon (ENSMUSG00000004038.9, exon 1 of 8) protein_coding-exon (ENSMUSG00000004038.9, exon 1 of 8) 143 ENSMUSG00000004038.9 ENSMUSG00000004038 ENSMUST00000004136 Gstm3 protein_coding Interval_157055 chr8 64832397 64834668 + 0 NA intron (ENSMUSG00000031605.8, intron 2 of 13) protein_coding-intron (ENSMUSG00000031605.8, intron 2 of 14) -4702 ENSMUSG00000109854.1 ENSMUSG00000109854 ENSMUST00000211427 Gm45345 antisense Interval_163702 chr9 24639832 24640089 + 0 NA intron (ENSMUSG00000085576.3, intron 12 of 21) protein_coding-intron (ENSMUSG00000085576.3, intron 12 of 21) 14764 ENSMUSG00000047995.7 ENSMUSG00000047995 ENSMUST00000053956 Cypt4 protein_coding Interval_9626 chr1 160410635 160411039 + 0 NA intron (ENSMUSG00000026721.16, intron 1 of 6) protein_coding-intron (ENSMUSG00000026721.16, intron 17 of 20) 31067 ENSMUSG00000026721.16 ENSMUSG00000026721 ENSMUST00000193810 Rabgap1l protein_coding Interval_105762 chr3 89202467 89204057 + 0 NA exon (ENSMUSG00000028048.11, exon 2 of 12) protein_coding-exon (ENSMUSG00000028048.11, exon 2 of 12) -1989 ENSMUSG00000094489.1 ENSMUSG00000094489 ENSMUST00000178701 Gm23269 snRNA Interval_7556 chr1 132197734 132198345 + 0 NA promoter-TSS (ENSMUSG00000065435.1) miRNA-promoter-TSS (ENSMUSG00000065435.1) -49 ENSMUSG00000065435.1 ENSMUSG00000065435 ENSMUST00000083501 Mir135b miRNA Interval_102104 chr3 17619773 17620075 + 0 NA Intergenic Intergenic -50764 ENSMUSG00000104242.1 ENSMUSG00000104242 ENSMUST00000195444 Gm38154 processed_pseudogene Interval_80710 chr18 46514848 46515085 + 0 NA intron (ENSMUSG00000033319.5, intron 2 of 2) protein_coding-intron (ENSMUSG00000033319.5, intron 2 of 2) 11005 ENSMUSG00000033319.5 ENSMUSG00000033319 ENSMUST00000036226 Fem1c protein_coding Interval_136693 chr6 57824286 57825660 + 0 NA promoter-TSS (ENSMUSG00000037788.14) protein_coding-promoter-TSS (ENSMUSG00000037788.14) 177 ENSMUSG00000037788.14 ENSMUSG00000037788 ENSMUST00000143953 Vopp1 protein_coding Interval_77322 chr17 88005403 88005751 + 0 NA intron (ENSMUSG00000005371.15, intron 11 of 22) protein_coding-intron (ENSMUSG00000005371.15, intron 11 of 22) 30482 ENSMUSG00000005370.4 ENSMUSG00000005370 ENSMUST00000234756 Msh6 protein_coding Interval_17845 chr10 80357955 80358721 + 0 NA promoter-TSS (ENSMUSG00000035486.14) protein_coding-promoter-TSS (ENSMUSG00000035486.14) 361 ENSMUSG00000035486.14 ENSMUSG00000035486 ENSMUST00000146826 Plk5 protein_coding Interval_153872 chr8 10367341 10367610 + 0 NA intron (ENSMUSG00000039057.11, intron 5 of 5) protein_coding-intron (ENSMUSG00000039057.11, intron 4 of 34) 118187 ENSMUSG00000039057.11 ENSMUSG00000039057 ENSMUST00000042103 Myo16 protein_coding Interval_133294 chr5 151292454 151293022 + 0 NA intron (ENSMUSG00000107011.1, intron 1 of 5) protein_coding-intron (ENSMUSG00000107011.1, intron 1 of 5) 11615 ENSMUSG00000107154.1 ENSMUSG00000107154 ENSMUST00000201227 Gm7041 processed_pseudogene Interval_45676 chr13 56772831 56773635 + 0 NA TTS (ENSMUSG00000021541.14) protein_coding-TTS (ENSMUSG00000021541.14) -19406 ENSMUSG00000110086.1 ENSMUSG00000110086 ENSMUST00000210744 Gm45623 protein_coding Interval_169127 chr9 93007546 93007724 + 0 NA Intergenic Intergenic -1896 ENSMUSG00000100294.6 ENSMUSG00000100294 ENSMUST00000188921 1700034K08Rik lincRNA Interval_18333 chr10 85003554 85003787 + 0 NA intron (ENSMUSG00000035620.15, intron 9 of 9) protein_coding-intron (ENSMUSG00000035620.15, intron 9 of 9) 66277 ENSMUSG00000035620.15 ENSMUSG00000035620 ENSMUST00000214820 Ric8b protein_coding Interval_162033 chr8 124597411 124597660 + 0 NA exon (ENSMUSG00000031981.7, exon 5 of 20) protein_coding-exon (ENSMUSG00000031981.7, exon 5 of 20) -15905 ENSMUSG00000031981.7 ENSMUSG00000031981 ENSMUST00000133583 Capn9 protein_coding Interval_23993 chr11 29232259 29232583 + 0 NA intron (ENSMUSG00000020462.14, intron 4 of 6) protein_coding-intron (ENSMUSG00000020462.14, intron 4 of 9) 14647 ENSMUSG00000020462.14 ENSMUSG00000020462 ENSMUST00000127940 Cfap36 protein_coding Interval_78139 chr18 9230581 9231769 + 0 NA Intergenic Intergenic 19012 ENSMUSG00000036904.6 ENSMUSG00000036904 ENSMUST00000041080 Fzd8 protein_coding Interval_136758 chr6 59179745 59180851 + 0 NA Intergenic Intergenic 12955 ENSMUSG00000107987.1 ENSMUSG00000107987 ENSMUST00000204516 Gm43905 processed_pseudogene Interval_165948 chr9 54874649 54874982 + 0 NA intron (ENSMUSG00000032293.8, intron 2 of 21) protein_coding-intron (ENSMUSG00000032293.8, intron 2 of 21) -22658 ENSMUSG00000032293.8 ENSMUSG00000032293 ENSMUST00000213482 Ireb2 protein_coding Interval_36181 chr12 38074651 38075153 + 0 NA intron (ENSMUSG00000113608.1, intron 1 of 1) protein_coding-intron (ENSMUSG00000036095.11, intron 2 of 24) 833 ENSMUSG00000113608.1 ENSMUSG00000113608 ENSMUST00000221127 Gm48715 antisense Interval_76644 chr17 83077819 83078745 + 0 NA promoter-TSS (ENSMUSG00000117399.1) processed_transcript-promoter-TSS (ENSMUSG00000117399.1) 144 ENSMUSG00000117399.1 ENSMUSG00000117399 ENSMUST00000234397 Gm19689 processed_transcript Interval_99274 chr2 158600679 158601832 + 0 NA exon (ENSMUSG00000086496.1, exon 3 of 3) processed_transcript-exon (ENSMUSG00000086496.1, exon 3 of 3) 9335 ENSMUSG00000086496.1 ENSMUSG00000086496 ENSMUST00000155319 Gm14204 processed_transcript Interval_17833 chr10 80313382 80314304 + 0 NA exon (ENSMUSG00000020135.13, exon 14 of 14) protein_coding-exon (ENSMUSG00000020135.13, exon 14 of 14) 6694 ENSMUSG00000020133.8 ENSMUSG00000020133 ENSMUST00000020341 2310011J03Rik protein_coding Interval_123777 chr5 35438801 35439057 + 0 NA Intergenic Intergenic 42831 ENSMUSG00000106970.1 ENSMUSG00000106970 ENSMUST00000201640 Gm43377 TEC Interval_170699 chr9 110166885 110167690 + 0 NA intron (ENSMUSG00000032481.17, intron 8 of 24) protein_coding-intron (ENSMUSG00000032481.17, intron 8 of 27) -45471 ENSMUSG00000105187.1 ENSMUSG00000105187 ENSMUST00000196828 Gm23377 snoRNA Interval_86997 chr19 45439566 45440090 + 0 NA exon (ENSMUSG00000025217.15, exon 4 of 4) protein_coding-exon (ENSMUSG00000025217.15, exon 4 of 4) 11367 ENSMUSG00000057605.4 ENSMUSG00000057605 ENSMUST00000077435 Gm6807 processed_pseudogene Interval_127104 chr5 100331480 100331794 + 0 NA intron (ENSMUSG00000085915.1, intron 1 of 4) unprocessed_pseudogene-intron (ENSMUSG00000085915.1, intron 1 of 4) 23482 ENSMUSG00000085915.1 ENSMUSG00000085915 ENSMUST00000150506 Gm8091 unprocessed_pseudogene Interval_50654 chr14 17632882 17633437 + 0 NA Intergenic Intergenic 137963 ENSMUSG00000114281.1 ENSMUSG00000114281 ENSMUST00000225878 Gm48320 processed_pseudogene Interval_44419 chr13 44742109 44742469 + 0 NA intron (ENSMUSG00000038518.15, intron 1 of 3) protein_coding-intron (ENSMUSG00000038518.15, intron 2 of 18) 10919 ENSMUSG00000038518.15 ENSMUSG00000038518 ENSMUST00000173003 Jarid2 protein_coding Interval_54111 chr14 65388744 65388962 + 0 NA exon (ENSMUSG00000034522.10, exon 4 of 10) protein_coding-exon (ENSMUSG00000034522.10, exon 4 of 10) -29443 ENSMUSG00000114357.1 ENSMUSG00000114357 ENSMUST00000225691 Gm48449 antisense Interval_63199 chr15 99701770 99702746 + 0 NA promoter-TSS (ENSMUSG00000023018.5) protein_coding-promoter-TSS (ENSMUSG00000023018.5) 1718 ENSMUSG00000116250.1 ENSMUSG00000116250 ENSMUST00000229686 Gm34939 antisense Interval_22836 chr11 16507412 16508664 + 0 NA promoter-TSS (ENSMUSG00000078974.10) protein_coding-promoter-TSS (ENSMUSG00000078974.10) 446 ENSMUSG00000078974.10 ENSMUSG00000078974 ENSMUST00000138695 Sec61g protein_coding Interval_132964 chr5 148989141 148989808 + 0 NA TTS (ENSMUSG00000106951.1) lincRNA-TTS (ENSMUSG00000106951.1) 5673 ENSMUSG00000106892.1 ENSMUSG00000106892 ENSMUST00000134031 Gm42791 protein_coding Interval_106092 chr3 92933539 92934326 + 0 NA exon (ENSMUSG00000042031.4, exon 2 of 2) protein_coding-exon (ENSMUSG00000042031.4, exon 2 of 2) 953 ENSMUSG00000042031.4 ENSMUSG00000042031 ENSMUST00000046234 Lce3b protein_coding Interval_83011 chr18 80384606 80384916 + 0 NA Intergenic Intergenic -21425 ENSMUSG00000059852.7 ENSMUSG00000059852 ENSMUST00000184366 Kcng2 protein_coding Interval_76553 chr17 81015871 81016197 + 0 NA Intergenic Intergenic 49048 ENSMUSG00000024246.9 ENSMUSG00000024246 ENSMUST00000234801 Thumpd2 protein_coding Interval_5793 chr1 91893257 91894081 + 0 NA Intergenic Intergenic -22591 ENSMUSG00000102745.1 ENSMUSG00000102745 ENSMUST00000193764 Gm37600 TEC Interval_151069 chr7 118291661 118292069 + 0 NA Intergenic Intergenic 12004 ENSMUSG00000087922.1 ENSMUSG00000087922 ENSMUST00000157297 Gm23229 snRNA Interval_144069 chr7 19290789 19291695 + 0 NA intron (ENSMUSG00000030401.16, intron 1 of 6) protein_coding-intron (ENSMUSG00000030401.16, intron 4 of 9) 8607 ENSMUSG00000030401.16 ENSMUSG00000030401 ENSMUST00000108468 Rtn2 protein_coding Interval_172193 chrX 8756428 8756943 + 0 NA Intergenic Intergenic 8253 ENSMUSG00000035371.8 ENSMUSG00000035371 ENSMUST00000103001 Ssx9 protein_coding Interval_8050 chr1 135429837 135430978 + 0 NA promoter-TSS (ENSMUSG00000041879.13) protein_coding-promoter-TSS (ENSMUSG00000041879.13) -16221 ENSMUSG00000100620.1 ENSMUSG00000100620 ENSMUST00000187450 Gm28277 sense_intronic Interval_130766 chr5 130263668 130264068 + 0 NA intron (ENSMUSG00000056310.14, intron 3 of 8) protein_coding-intron (ENSMUSG00000056310.14, intron 3 of 15) 8249 ENSMUSG00000056310.14 ENSMUSG00000056310 ENSMUST00000147619 Tyw1 protein_coding Interval_53399 chr14 56935508 56935982 + 0 NA intron (ENSMUSG00000021945.9, intron 5 of 17) protein_coding-intron (ENSMUSG00000021945.9, intron 11 of 23) -13809 ENSMUSG00000021945.9 ENSMUSG00000021945 ENSMUST00000226025 Zmym2 protein_coding Interval_107340 chr3 105982458 105982689 + 0 NA intron (ENSMUSG00000074340.9, intron 6 of 7) protein_coding-intron (ENSMUSG00000074340.9, intron 9 of 10) 5282 ENSMUSG00000074340.9 ENSMUSG00000074340 ENSMUST00000092878 Ovgp1 protein_coding Interval_157778 chr8 73029892 73030702 + 0 NA intron (ENSMUSG00000004383.18, intron 7 of 15) protein_coding-intron (ENSMUSG00000004383.18, intron 6 of 14) 13785 ENSMUSG00000093140.1 ENSMUSG00000093140 ENSMUST00000175399 Mir28b miRNA Interval_129940 chr5 123180526 123181034 + 0 NA intron (ENSMUSG00000029445.13, intron 4 of 7) protein_coding-intron (ENSMUSG00000029445.13, intron 5 of 13) 1942 ENSMUSG00000029445.13 ENSMUSG00000029445 ENSMUST00000124110 Hpd protein_coding Interval_75877 chr17 72479128 72479761 + 0 NA intron (ENSMUSG00000055471.7, intron 1 of 3) protein_coding-intron (ENSMUSG00000055471.7, intron 1 of 28) 19974 ENSMUSG00000089487.1 ENSMUSG00000089487 ENSMUST00000158862 Gm24736 snRNA Interval_56258 chr14 115180112 115180427 + 0 NA intron (ENSMUSG00000022112.14, intron 2 of 7) protein_coding-intron (ENSMUSG00000022112.14, intron 2 of 7) 88054 ENSMUSG00000022112.14 ENSMUSG00000022112 ENSMUST00000022707 Gpc5 protein_coding Interval_162625 chr9 6914426 6915382 + 0 NA Intergenic Intergenic 113061 ENSMUSG00000111464.1 ENSMUSG00000111464 ENSMUST00000213261 Gm48675 processed_pseudogene Interval_166187 chr9 57323270 57323829 + 0 NA Intergenic Intergenic 5866 ENSMUSG00000111457.1 ENSMUSG00000111457 ENSMUST00000214851 Gm18996 processed_pseudogene Interval_64025 chr16 5483426 5483973 + 0 NA Intergenic Intergenic -159542 ENSMUSG00000084573.1 ENSMUSG00000084573 ENSMUST00000122624 n-R5s30 rRNA Interval_37885 chr12 72790549 72791192 + 0 NA promoter-TSS (ENSMUSG00000021096.11) protein_coding-promoter-TSS (ENSMUSG00000021096.11) -26842 ENSMUSG00000113779.1 ENSMUSG00000113779 ENSMUST00000222961 Gm33785 lincRNA Interval_134550 chr6 29497952 29499544 + 0 NA promoter-TSS (ENSMUSG00000059022.15) protein_coding-promoter-TSS (ENSMUSG00000059022.15) -140 ENSMUSG00000059022.15 ENSMUSG00000059022 ENSMUST00000161237 Kcp protein_coding Interval_113074 chr4 47501853 47503225 + 0 NA Intergenic Intergenic 27775 ENSMUSG00000053317.11 ENSMUSG00000053317 ENSMUST00000136685 Sec61b protein_coding Interval_168685 chr9 85856570 85857025 + 0 NA Intergenic Intergenic -12666 ENSMUSG00000056031.13 ENSMUSG00000056031 ENSMUST00000187891 9330154J02Rik processed_transcript Interval_44177 chr13 41605227 41606439 + 0 NA promoter-TSS (ENSMUSG00000087370.3) protein_coding-promoter-TSS (ENSMUSG00000087370.3) -74 ENSMUSG00000087370.3 ENSMUSG00000087370 ENSMUST00000129449 Tmem170b protein_coding Interval_86375 chr19 39292194 39292413 + 0 NA intron (ENSMUSG00000003053.17, intron 3 of 7) protein_coding-intron (ENSMUSG00000003053.17, intron 3 of 8) 5229 ENSMUSG00000003053.17 ENSMUSG00000003053 ENSMUST00000177087 Cyp2c29 protein_coding Interval_79156 chr18 25112386 25112583 + 0 NA intron (ENSMUSG00000034295.10, intron 18 of 24) protein_coding-intron (ENSMUSG00000034295.10, intron 20 of 26) 56210 ENSMUSG00000024269.11 ENSMUSG00000024269 ENSMUST00000115817 Tpgs2 protein_coding Interval_55242 chr14 79587089 79588045 + 0 NA promoter-TSS (ENSMUSG00000022024.10) protein_coding-promoter-TSS (ENSMUSG00000022024.10) -242 ENSMUSG00000022024.10 ENSMUSG00000022024 ENSMUST00000226320 Sugt1 protein_coding Interval_164213 chr9 32591676 32592590 + 0 NA Intergenic Intergenic -21319 ENSMUSG00000110844.1 ENSMUSG00000110844 ENSMUST00000214084 Gm47680 lincRNA Interval_25495 chr11 49219568 49219810 + 0 NA TTS (ENSMUSG00000046311.13) protein_coding-TTS (ENSMUSG00000046311.13) 7001 ENSMUSG00000046311.13 ENSMUSG00000046311 ENSMUST00000061757 Zfp62 protein_coding Interval_23617 chr11 23845605 23847122 + 0 NA Intergenic Intergenic 45541 ENSMUSG00000020273.13 ENSMUSG00000020273 ENSMUST00000102863 Papolg protein_coding Interval_147861 chr7 74371314 74371907 + 0 NA intron (ENSMUSG00000025790.14, intron 1 of 1) protein_coding-intron (ENSMUSG00000025790.14, intron 2 of 9) -21088 ENSMUSG00000085161.1 ENSMUSG00000085161 ENSMUST00000132826 Gm7580 antisense Interval_125481 chr5 67463476 67464309 + 0 NA promoter-TSS (ENSMUSG00000107385.3) processed_transcript-promoter-TSS (ENSMUSG00000107385.3) -11 ENSMUSG00000107385.3 ENSMUSG00000107385 ENSMUST00000202828 C330024D21Rik processed_transcript Interval_154154 chr8 13091957 13092488 + 0 NA intron (ENSMUSG00000038542.14, intron 3 of 10) protein_coding-intron (ENSMUSG00000038542.14, intron 6 of 13) 5713 ENSMUSG00000091784.2 ENSMUSG00000091784 ENSMUST00000166415 Gm17022 processed_pseudogene Interval_86198 chr19 37715836 37716392 + 0 NA Intergenic Intergenic 7309 ENSMUSG00000117989.1 ENSMUSG00000117989 ENSMUST00000235833 Gm9066 processed_pseudogene Interval_93253 chr2 71494551 71495632 + 0 NA promoter-TSS (ENSMUSG00000088066.1) snRNA-promoter-TSS (ENSMUSG00000088066.1) -180 ENSMUSG00000088066.1 ENSMUSG00000088066 ENSMUST00000157441 Gm23253 snRNA Interval_65727 chr16 26128173 26128472 + 0 NA Intergenic Intergenic -87054 ENSMUSG00000090203.2 ENSMUSG00000090203 ENSMUST00000159040 AU015336 sense_intronic Interval_120588 chr4 149546436 149546828 + 0 NA intron (ENSMUSG00000028988.13, intron 3 of 3) protein_coding-intron (ENSMUSG00000028988.13, intron 4 of 4) 1515 ENSMUSG00000028988.13 ENSMUSG00000028988 ENSMUST00000105692 Ctnnbip1 protein_coding Interval_143386 chr7 6282879 6284025 + 0 NA intron (ENSMUSG00000108949.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000108949.1, intron 1 of 2) 158 ENSMUSG00000108949.1 ENSMUSG00000108949 ENSMUST00000208604 Gm45069 lincRNA Interval_49615 chr13 113569343 113570202 + 0 NA Intergenic Intergenic -2005 ENSMUSG00000114715.1 ENSMUSG00000114715 ENSMUST00000225395 Gm34471 lincRNA Interval_87670 chr19 54130258 54130480 + 0 NA Intergenic Intergenic 45810 ENSMUSG00000117921.1 ENSMUSG00000117921 ENSMUST00000236398 Gm50186 lincRNA Interval_143802 chr7 16405897 16406663 + 0 NA TTS (ENSMUSG00000109781.1) lincRNA-TTS (ENSMUSG00000109781.1) 1703 ENSMUSG00000109781.1 ENSMUSG00000109781 ENSMUST00000209624 Gm45509 lincRNA Interval_154720 chr8 22838282 22839116 + 0 NA Intergenic Intergenic -16154 ENSMUSG00000089484.1 ENSMUSG00000089484 ENSMUST00000158859 Gm24735 snRNA Interval_105386 chr3 85906976 85907323 + 0 NA Intergenic Intergenic 1310 ENSMUSG00000064840.1 ENSMUSG00000064840 ENSMUST00000082906 Gm26204 snRNA Interval_151414 chr7 122197076 122197554 + 0 NA Intergenic Intergenic -11108 ENSMUSG00000030866.8 ENSMUSG00000030866 ENSMUST00000033153 Ern2 protein_coding Interval_24848 chr11 40336613 40337264 + 0 NA intron (ENSMUSG00000085301.1, intron 6 of 7) lincRNA-intron (ENSMUSG00000085301.1, intron 6 of 7) 86416 ENSMUSG00000082295.1 ENSMUSG00000082295 ENSMUST00000121775 Gm12133 processed_pseudogene Interval_49191 chr13 109286915 109287118 + 0 NA intron (ENSMUSG00000021699.17, intron 1 of 14) protein_coding-intron (ENSMUSG00000021699.17, intron 1 of 14) -37728 ENSMUSG00000076946.2 ENSMUSG00000076946 ENSMUST00000103758 Mir582 miRNA Interval_146140 chr7 44304492 44305868 + 0 NA intron (ENSMUSG00000004473.10, intron 3 of 3) protein_coding-intron (ENSMUSG00000004473.10, intron 3 of 3) 1722 ENSMUSG00000004473.10 ENSMUSG00000004473 ENSMUST00000004587 Clec11a protein_coding Interval_99456 chr2 161341295 161341978 + 0 NA Intergenic Intergenic 10322 ENSMUSG00000087031.1 ENSMUSG00000087031 ENSMUST00000151260 Gm14241 lincRNA Interval_124207 chr5 40866590 40866876 + 0 NA Intergenic Intergenic -414503 ENSMUSG00000106865.1 ENSMUSG00000106865 ENSMUST00000200907 4930519E07Rik TEC Interval_16201 chr10 61405550 61406488 + 0 NA Intergenic Intergenic -11953 ENSMUSG00000037171.6 ENSMUSG00000037171 ENSMUST00000049339 Nodal protein_coding Interval_58357 chr15 33407832 33408123 + 0 NA intron (ENSMUSG00000039007.10, intron 6 of 8) protein_coding-intron (ENSMUSG00000039007.10, intron 5 of 7) -2001 ENSMUSG00000058101.3 ENSMUSG00000058101 ENSMUST00000079057 1700084J12Rik transcribed_processed_pseudogene Interval_23099 chr11 19946649 19946951 + 0 NA intron (ENSMUSG00000045671.17, intron 1 of 6) protein_coding-intron (ENSMUSG00000045671.17, intron 1 of 5) -7770 ENSMUSG00000045671.17 ENSMUSG00000045671 ENSMUST00000123036 Spred2 protein_coding Interval_65529 chr16 23095434 23095867 + 0 NA Intergenic Intergenic 2707 ENSMUSG00000116625.1 ENSMUSG00000116625 ENSMUST00000231398 Gm8134 processed_pseudogene Interval_137275 chr6 70965749 70965941 + 0 NA Intergenic Intergenic 9314 ENSMUSG00000055874.6 ENSMUSG00000055874 ENSMUST00000069634 Foxi3 protein_coding Interval_94020 chr2 80746919 80747173 + 0 NA Intergenic Intergenic 39457 ENSMUSG00000077404.1 ENSMUSG00000077404 ENSMUST00000104216 Gm25420 snoRNA Interval_139835 chr6 110023400 110023760 + 0 NA Intergenic Intergenic -9809 ENSMUSG00000107930.1 ENSMUSG00000107930 ENSMUST00000203543 Gm44162 processed_pseudogene Interval_146425 chr7 45813746 45814971 + 0 NA promoter-TSS (ENSMUSG00000003269.17) protein_coding-promoter-TSS (ENSMUSG00000003269.17) 336 ENSMUSG00000110197.1 ENSMUSG00000110197 ENSMUST00000211394 Gm45444 TEC Interval_30121 chr11 89382105 89382418 + 0 NA Intergenic Intergenic 79538 ENSMUSG00000085798.1 ENSMUSG00000085798 ENSMUST00000140754 Gm2018 lincRNA Interval_15647 chr10 52870331 52870561 + 0 NA intron (ENSMUSG00000038602.7, intron 1 of 7) protein_coding-intron (ENSMUSG00000038602.7, intron 1 of 7) -35192 ENSMUSG00000088322.1 ENSMUSG00000088322 ENSMUST00000157697 Gm25664 snRNA Interval_162451 chr8 128896712 128896940 + 0 NA intron (ENSMUSG00000025808.17, intron 30 of 55) protein_coding-intron (ENSMUSG00000025808.17, intron 30 of 55) -97660 ENSMUSG00000025808.17 ENSMUSG00000025808 ENSMUST00000108747 Ccdc7a protein_coding Interval_6662 chr1 118611918 118612129 + 0 NA exon (ENSMUSG00000064302.13, exon 40 of 40) protein_coding-exon (ENSMUSG00000064302.13, exon 40 of 40) -15922 ENSMUSG00000026380.10 ENSMUSG00000026380 ENSMUST00000027629 Tfcp2l1 protein_coding Interval_30495 chr11 94735628 94736138 + 0 NA Intergenic Intergenic -5899 ENSMUSG00000020870.7 ENSMUSG00000020870 ENSMUST00000188741 Cdc34b protein_coding Interval_29917 chr11 87730840 87732056 + 0 NA TTS (ENSMUSG00000034177.15) protein_coding-TTS (ENSMUSG00000034177.15) -6104 ENSMUSG00000020485.14 ENSMUSG00000020485 ENSMUST00000141169 Supt4a protein_coding Interval_9610 chr1 160209359 160210140 + 0 NA intron (ENSMUSG00000014226.10, intron 1 of 3) protein_coding-intron (ENSMUSG00000014226.10, intron 1 of 5) 3056 ENSMUSG00000014226.10 ENSMUSG00000014226 ENSMUST00000194167 Cacybp protein_coding Interval_69689 chr16 95568506 95568803 + 0 NA intron (ENSMUSG00000040732.20, intron 1 of 10) protein_coding-intron (ENSMUSG00000040732.20, intron 1 of 10) -38289 ENSMUSG00000040732.20 ENSMUSG00000040732 ENSMUST00000121809 Erg protein_coding Interval_36666 chr12 51865227 51866802 + 0 NA Intergenic Intergenic -25393 ENSMUSG00000112746.1 ENSMUSG00000112746 ENSMUST00000218295 Gm19309 processed_pseudogene Interval_88154 chr19 59916094 59916682 + 0 NA intron (ENSMUSG00000040022.14, intron 3 of 4) protein_coding-intron (ENSMUSG00000040022.14, intron 3 of 5) -15326 ENSMUSG00000090965.1 ENSMUSG00000090965 ENSMUST00000164379 Gm17203 lincRNA Interval_17684 chr10 79460317 79460696 + 0 NA Intergenic Intergenic -8333 ENSMUSG00000091381.3 ENSMUSG00000091381 ENSMUST00000233849 Vmn2r83 protein_coding Interval_38594 chr12 80331490 80332703 + 0 NA Intergenic Intergenic 44596 ENSMUSG00000049106.7 ENSMUSG00000049106 ENSMUST00000218498 Dcaf5 protein_coding Interval_35055 chr12 16894114 16895639 + 0 NA promoter-TSS (ENSMUSG00000020580.10) protein_coding-promoter-TSS (ENSMUSG00000020580.10) 27429 ENSMUSG00000113202.1 ENSMUSG00000113202 ENSMUST00000222207 Gm48291 processed_pseudogene Interval_169928 chr9 103013293 103014023 + 0 NA intron (ENSMUSG00000032548.14, intron 1 of 13) protein_coding-intron (ENSMUSG00000032548.14, intron 1 of 13) -2138 ENSMUSG00000065466.1 ENSMUSG00000065466 ENSMUST00000083532 n-R5s89 rRNA Interval_25423 chr11 48114666 48115158 + 0 NA Intergenic Intergenic 175401 ENSMUSG00000081952.1 ENSMUSG00000081952 ENSMUST00000120545 Gm12178 processed_pseudogene Interval_113917 chr4 59844652 59844934 + 0 NA intron (ENSMUSG00000028385.14, intron 1 of 8) protein_coding-intron (ENSMUSG00000028385.14, intron 1 of 8) 11116 ENSMUSG00000080772.1 ENSMUSG00000080772 ENSMUST00000120410 Gm12543 transcribed_processed_pseudogene Interval_144535 chr7 25754285 25756383 + 0 NA promoter-TSS (ENSMUSG00000040725.13) protein_coding-promoter-TSS (ENSMUSG00000040725.13) -577 ENSMUSG00000040725.13 ENSMUSG00000040725 ENSMUST00000206041 Hnrnpul1 protein_coding Interval_106219 chr3 94741715 94741885 + 0 NA intron (ENSMUSG00000081355.1, intron 1 of 5) unprocessed_pseudogene-intron (ENSMUSG00000081355.1, intron 1 of 5) 4457 ENSMUSG00000104881.1 ENSMUSG00000104881 ENSMUST00000195994 Gm43711 processed_pseudogene Interval_79678 chr18 34460444 34460875 + 0 NA intron (ENSMUSG00000036501.7, intron 3 of 7) protein_coding-intron (ENSMUSG00000036501.7, intron 11 of 20) 37244 ENSMUSG00000036501.7 ENSMUSG00000036501 ENSMUST00000236598 Fam13b protein_coding Interval_20516 chr10 118164717 118165808 + 0 NA promoter-TSS (ENSMUSG00000112684.1) antisense-promoter-TSS (ENSMUSG00000112684.1) -100 ENSMUSG00000112684.1 ENSMUSG00000112684 ENSMUST00000219046 Gm47958 antisense Interval_129097 chr5 117380022 117380305 + 0 NA promoter-TSS (ENSMUSG00000029363.14) protein_coding-promoter-TSS (ENSMUSG00000029363.14) 4511 ENSMUSG00000029364.15 ENSMUSG00000029364 ENSMUST00000136895 Wsb2 protein_coding Interval_171017 chr9 113740838 113742201 + 0 NA promoter-TSS (ENSMUSG00000033392.16) protein_coding-promoter-TSS (ENSMUSG00000033392.16) 7 ENSMUSG00000033392.16 ENSMUSG00000033392 ENSMUST00000163895 Clasp2 protein_coding Interval_61806 chr15 84282054 84282878 + 0 NA intron (ENSMUSG00000022438.6, intron 3 of 4) protein_coding-intron (ENSMUSG00000022438.6, intron 3 of 12) 25326 ENSMUSG00000022438.6 ENSMUSG00000022438 ENSMUST00000131158 Parvb protein_coding Interval_66600 chr16 35553900 35554740 + 0 NA intron (ENSMUSG00000052133.16, intron 1 of 5) protein_coding-intron (ENSMUSG00000052133.16, intron 1 of 21) 19236 ENSMUSG00000052192.5 ENSMUSG00000052192 ENSMUST00000143451 Gm5963 processed_pseudogene Interval_81785 chr18 64648595 64648897 + 0 NA intron (ENSMUSG00000039529.9, intron 1 of 4) protein_coding-intron (ENSMUSG00000039529.9, intron 1 of 27) 12061 ENSMUSG00000039529.9 ENSMUSG00000039529 ENSMUST00000237686 Atp8b1 protein_coding Interval_151986 chr7 127966565 127968570 + 0 NA promoter-TSS (ENSMUSG00000030795.18) protein_coding-promoter-TSS (ENSMUSG00000030795.18) -10565 ENSMUSG00000030795.18 ENSMUSG00000030795 ENSMUST00000079045 Fus protein_coding Interval_155492 chr8 33895700 33896335 + 0 NA intron (ENSMUSG00000031586.17, intron 1 of 8) protein_coding-intron (ENSMUSG00000031586.17, intron 1 of 7) -10270 ENSMUSG00000098166.1 ENSMUSG00000098166 ENSMUST00000182843 Gm26978 sense_intronic Interval_43821 chr13 37325220 37326282 + 0 NA promoter-TSS (ENSMUSG00000114508.1) lincRNA-promoter-TSS (ENSMUSG00000114508.1) -715 ENSMUSG00000114508.1 ENSMUSG00000114508 ENSMUST00000224579 Gm47711 lincRNA Interval_85152 chr19 23180065 23180848 + 0 NA Intergenic Intergenic 31025 ENSMUSG00000080626.1 ENSMUSG00000080626 ENSMUST00000116976 Mir1192 miRNA Interval_128553 chr5 113976815 113977409 + 0 NA intron (ENSMUSG00000042121.16, intron 2 of 3) protein_coding-intron (ENSMUSG00000042121.16, intron 1 of 13) -10356 ENSMUSG00000042121.16 ENSMUSG00000042121 ENSMUST00000162322 Ssh1 protein_coding Interval_76712 chr17 83649687 83650775 + 0 NA Intergenic Intergenic -18336 ENSMUSG00000045053.2 ENSMUSG00000045053 ENSMUST00000051482 Kcng3 protein_coding Interval_1786 chr1 33778855 33779129 + 0 NA TTS (ENSMUSG00000042197.13) protein_coding-TTS (ENSMUSG00000042197.13) -21265 ENSMUSG00000042215.8 ENSMUSG00000042215 ENSMUST00000189741 Bag2 protein_coding Interval_144358 chr7 24662372 24663260 + 0 NA exon (ENSMUSG00000108470.1, exon 2 of 2) lincRNA-exon (ENSMUSG00000108470.1, exon 2 of 2) 1522 ENSMUSG00000108470.1 ENSMUSG00000108470 ENSMUST00000206756 Gm4598 lincRNA Interval_140793 chr6 121377425 121378822 + 0 NA intron (ENSMUSG00000040797.16, intron 12 of 12) protein_coding-intron (ENSMUSG00000040797.16, intron 13 of 13) 21303 ENSMUSG00000030109.15 ENSMUSG00000030109 ENSMUST00000170339 Slc6a12 protein_coding Interval_165982 chr9 55198005 55198278 + 0 NA intron (ENSMUSG00000032307.16, intron 1 of 2) protein_coding-intron (ENSMUSG00000032307.16, intron 11 of 12) 3296 ENSMUSG00000032307.16 ENSMUSG00000032307 ENSMUST00000148468 Ube2q2 protein_coding Interval_79353 chr18 31050169 31050810 + 0 NA intron (ENSMUSG00000057455.12, intron 4 of 4) protein_coding-intron (ENSMUSG00000057455.12, intron 3 of 3) 162243 ENSMUSG00000057455.12 ENSMUSG00000057455 ENSMUST00000139924 Rit2 protein_coding Interval_63941 chr16 4679148 4680109 + 0 NA promoter-TSS (ENSMUSG00000039637.15) protein_coding-promoter-TSS (ENSMUSG00000039637.15) -4487 ENSMUSG00000004069.17 ENSMUSG00000004069 ENSMUST00000229529 Dnaja3 protein_coding Interval_172434 chrX 19906267 19907919 + 0 NA Intergenic Intergenic 13436 ENSMUSG00000080998.1 ENSMUSG00000080998 ENSMUST00000120313 Gm5384 processed_pseudogene Interval_11062 chr1 179086985 179088491 + 0 NA intron (ENSMUSG00000055067.15, intron 3 of 7) protein_coding-intron (ENSMUSG00000055067.15, intron 4 of 8) -170124 ENSMUSG00000089713.1 ENSMUSG00000089713 ENSMUST00000162545 Gm16564 antisense Interval_167828 chr9 72911452 72912349 + 0 NA intron (ENSMUSG00000036030.9, intron 1 of 1) protein_coding-intron (ENSMUSG00000036030.9, intron 19 of 19) 1273 ENSMUSG00000036030.9 ENSMUSG00000036030 ENSMUST00000184274 Prtg protein_coding Interval_98586 chr2 153403933 153405587 + 0 NA TTS (ENSMUSG00000042548.14) protein_coding-TTS (ENSMUSG00000042548.14) -9089 ENSMUSG00000082283.1 ENSMUSG00000082283 ENSMUST00000119815 Gm14472 processed_pseudogene Interval_113268 chr4 52726544 52727062 + 0 NA Intergenic Intergenic -94685 ENSMUSG00000081975.1 ENSMUSG00000081975 ENSMUST00000120435 Gm12482 processed_pseudogene Interval_163343 chr9 20971920 20972808 + 0 NA intron (ENSMUSG00000043895.6, intron 1 of 1) protein_coding-intron (ENSMUSG00000043895.6, intron 1 of 1) 1614 ENSMUSG00000043895.6 ENSMUSG00000043895 ENSMUST00000214333 S1pr2 protein_coding Interval_40209 chr12 102562361 102562589 + 0 NA TTS (ENSMUSG00000021194.6) protein_coding-TTS (ENSMUSG00000021194.6) 4407 ENSMUSG00000021194.6 ENSMUSG00000021194 ENSMUST00000223100 Chga protein_coding Interval_18059 chr10 81593607 81594490 + 0 NA TTS (ENSMUSG00000034758.12) protein_coding-TTS (ENSMUSG00000034758.12) 1367 ENSMUSG00000034758.12 ENSMUSG00000034758 ENSMUST00000127546 Tle6 protein_coding Interval_57992 chr15 25891531 25892722 + 0 NA intron (ENSMUSG00000022270.16, intron 2 of 8) protein_coding-intron (ENSMUSG00000022270.16, intron 2 of 8) -18298 ENSMUSG00000022270.16 ENSMUSG00000022270 ENSMUST00000228306 Retreg1 protein_coding Interval_122878 chr5 26750974 26752549 + 0 NA Intergenic Intergenic 76744 ENSMUSG00000104733.1 ENSMUSG00000104733 ENSMUST00000196217 Gm29784 processed_pseudogene Interval_123591 chr5 33666798 33667168 + 0 NA intron (ENSMUSG00000037313.16, intron 6 of 14) protein_coding-intron (ENSMUSG00000037313.16, intron 6 of 14) 8836 ENSMUSG00000037313.16 ENSMUSG00000037313 ENSMUST00000139888 Tacc3 protein_coding Interval_135806 chr6 47475665 47476148 + 0 NA intron (ENSMUSG00000029686.15, intron 1 of 1) protein_coding-intron (ENSMUSG00000029686.15, intron 1 of 21) -21586 ENSMUSG00000052241.3 ENSMUSG00000052241 ENSMUST00000064013 A930035D04Rik pseudogene Interval_158563 chr8 84512147 84514325 + 0 NA intron (ENSMUSG00000034656.18, intron 5 of 48) protein_coding-intron (ENSMUSG00000034656.18, intron 3 of 46) 103948 ENSMUSG00000086067.1 ENSMUSG00000086067 ENSMUST00000127527 Gm16183 antisense Interval_136016 chr6 49656680 49656960 + 0 NA Intergenic Intergenic 70703 ENSMUSG00000107982.1 ENSMUSG00000107982 ENSMUST00000203005 Gm44219 processed_pseudogene Interval_139095 chr6 95069495 95069793 + 0 NA Intergenic Intergenic 30663 ENSMUSG00000093999.1 ENSMUSG00000093999 ENSMUST00000178307 Gm26501 snRNA Interval_46521 chr13 66802258 66803268 + 0 NA promoter-TSS (ENSMUSG00000114353.1) transcribed_processed_pseudogene-promoter-TSS (ENSMUSG00000114353.1) -203 ENSMUSG00000114353.1 ENSMUSG00000114353 ENSMUST00000224917 Gm7896 transcribed_processed_pseudogene Interval_68046 chr16 64723370 64724076 + 0 NA Intergenic Intergenic 42933 ENSMUSG00000059920.9 ENSMUSG00000059920 ENSMUST00000076991 4930453N24Rik protein_coding Interval_155824 chr8 39523923 39524312 + 0 NA Intergenic Intergenic 68207 ENSMUSG00000110118.1 ENSMUSG00000110118 ENSMUST00000210008 Gm5609 processed_pseudogene Interval_93884 chr2 77928489 77928686 + 0 NA TTS (ENSMUSG00000027014.14) protein_coding-TTS (ENSMUSG00000027014.14) 8140 ENSMUSG00000027014.14 ENSMUSG00000027014 ENSMUST00000156863 Cwc22 protein_coding Interval_169565 chr9 99160662 99161030 + 0 NA Intergenic Intergenic -20921 ENSMUSG00000032462.14 ENSMUSG00000032462 ENSMUST00000124723 Pik3cb protein_coding Interval_28529 chr11 76529518 76531574 + 0 NA intron (ENSMUSG00000017631.19, intron 1 of 22) protein_coding-intron (ENSMUSG00000017631.19, intron 1 of 22) 16477 ENSMUSG00000080763.2 ENSMUSG00000080763 ENSMUST00000119724 Gm12341 processed_pseudogene Interval_45036 chr13 51651089 51652186 + 0 NA promoter-TSS (ENSMUSG00000035139.14) protein_coding-promoter-TSS (ENSMUSG00000035139.14) -160 ENSMUSG00000035139.14 ENSMUSG00000035139 ENSMUST00000153877 Secisbp2 protein_coding Interval_95377 chr2 107219503 107219830 + 0 NA Intergenic Intergenic -71729 ENSMUSG00000042604.5 ENSMUSG00000042604 ENSMUST00000173191 Kcna4 protein_coding Interval_140802 chr6 121462702 121463467 + 0 NA intron (ENSMUSG00000040797.16, intron 1 of 12) protein_coding-intron (ENSMUSG00000040797.16, intron 1 of 13) 10581 ENSMUSG00000040797.16 ENSMUSG00000040797 ENSMUST00000151397 Iqsec3 protein_coding Interval_125972 chr5 76363180 76364057 + 0 NA exon (ENSMUSG00000029236.4, exon 1 of 10) protein_coding-exon (ENSMUSG00000029236.4, exon 1 of 10) 170 ENSMUSG00000029236.4 ENSMUSG00000029236 ENSMUST00000031146 Nmu protein_coding Interval_32357 chr11 107135591 107136675 + 0 NA Intergenic Intergenic -21275 ENSMUSG00000087596.1 ENSMUSG00000087596 ENSMUST00000129501 Gm11715 antisense Interval_38706 chr12 81331765 81333583 + 0 NA exon (ENSMUSG00000079055.10, exon 1 of 8) protein_coding-exon (ENSMUSG00000079055.10, exon 1 of 8) 506 ENSMUSG00000079055.10 ENSMUSG00000079055 ENSMUST00000183102 Slc8a3 protein_coding Interval_128910 chr5 116023918 116025036 + 0 NA promoter-TSS (ENSMUSG00000029513.14) protein_coding-promoter-TSS (ENSMUSG00000029513.14) -18 ENSMUSG00000029513.14 ENSMUSG00000029513 ENSMUST00000152174 Prkab1 protein_coding Interval_69995 chr17 4174189 4175956 + 0 NA Intergenic Intergenic -52970 ENSMUSG00000116615.1 ENSMUSG00000116615 ENSMUST00000231319 4930548J01Rik processed_transcript Interval_57475 chr15 11590469 11590773 + 0 NA Intergenic Intergenic -40108 ENSMUSG00000115804.1 ENSMUSG00000115804 ENSMUST00000228129 Gm49107 lincRNA Interval_32400 chr11 107352543 107353313 + 0 NA intron (ENSMUSG00000040430.18, intron 1 of 9) protein_coding-intron (ENSMUSG00000040430.18, intron 1 of 9) 14878 ENSMUSG00000086298.1 ENSMUSG00000086298 ENSMUST00000154414 Gm11716 antisense Interval_80818 chr18 47530568 47531265 + 0 NA Intergenic Intergenic -6819 ENSMUSG00000118259.1 ENSMUSG00000118259 ENSMUST00000236621 Gm5095 lincRNA Interval_10031 chr1 165229909 165230168 + 0 NA TTS (ENSMUSG00000102302.1) sense_intronic-TTS (ENSMUSG00000102302.1) 5087 ENSMUSG00000102302.1 ENSMUSG00000102302 ENSMUST00000192350 Gm38190 sense_intronic Interval_103861 chr3 53802568 53803207 + 0 NA Intergenic Intergenic -40520 ENSMUSG00000088653.1 ENSMUSG00000088653 ENSMUST00000158028 Gm24851 snRNA Interval_85356 chr19 25150946 25151309 + 0 NA intron (ENSMUSG00000052085.7, intron 1 of 1) protein_coding-intron (ENSMUSG00000052085.7, intron 26 of 47) 15089 ENSMUSG00000065634.1 ENSMUSG00000065634 ENSMUST00000083700 Gm24252 snoRNA Interval_143448 chr7 6864637 6864886 + 0 NA intron (ENSMUSG00000051527.11, intron 2 of 7) protein_coding-intron (ENSMUSG00000051527.11, intron 2 of 7) -24640 ENSMUSG00000092875.2 ENSMUSG00000092875 ENSMUST00000175134 Gm22649 misc_RNA Interval_141232 chr6 126011342 126012535 + 0 NA intron (ENSMUSG00000038115.16, intron 21 of 25) protein_coding-intron (ENSMUSG00000038115.16, intron 12 of 16) 127523 ENSMUSG00000088959.1 ENSMUSG00000088959 ENSMUST00000158334 Gm24947 snRNA Interval_152289 chr7 131409621 131411109 + 0 NA promoter-TSS (ENSMUSG00000030861.15) protein_coding-promoter-TSS (ENSMUSG00000030861.15) -7569 ENSMUSG00000108910.1 ENSMUSG00000108910 ENSMUST00000207838 Gm44625 TEC Interval_164688 chr9 40607752 40608822 + 0 NA exon (ENSMUSG00000111504.1, exon 4 of 4) lincRNA-exon (ENSMUSG00000111504.1, exon 4 of 4) 8099 ENSMUSG00000111504.1 ENSMUSG00000111504 ENSMUST00000216936 Gm48284 lincRNA Interval_145118 chr7 30143203 30144407 + 0 NA Intergenic Intergenic -8036 ENSMUSG00000108926.1 ENSMUSG00000108926 ENSMUST00000209150 Gm10988 processed_pseudogene Interval_91044 chr2 34645974 34646641 + 0 NA Intergenic Intergenic 3933 ENSMUSG00000087635.3 ENSMUSG00000087635 ENSMUST00000117516 Gm13414 processed_pseudogene Interval_172966 chrX 58018972 58021195 + 0 NA Intergenic Intergenic -2617 ENSMUSG00000067860.11 ENSMUSG00000067860 ENSMUST00000088629 Zic3 protein_coding Interval_125766 chr5 73987043 73988597 + 0 NA Intergenic Intergenic -26395 ENSMUSG00000087250.2 ENSMUSG00000087250 ENSMUST00000129275 Usp46os1 antisense Interval_3323 chr1 56923949 56924581 + 0 NA intron (ENSMUSG00000038331.15, intron 2 of 9) protein_coding-intron (ENSMUSG00000038331.15, intron 2 of 9) 45607 ENSMUSG00000038331.15 ENSMUSG00000038331 ENSMUST00000177282 Satb2 protein_coding Interval_45265 chr13 53688559 53689228 + 0 NA intron (ENSMUSG00000112965.1, intron 3 of 4) lincRNA-intron (ENSMUSG00000112965.1, intron 3 of 4) 11524 ENSMUSG00000112965.1 ENSMUSG00000112965 ENSMUST00000220534 Gm34278 lincRNA Interval_122248 chr5 20656375 20656595 + 0 NA intron (ENSMUSG00000040003.18, intron 20 of 20) protein_coding-intron (ENSMUSG00000040003.18, intron 21 of 22) -45792 ENSMUSG00000073174.6 ENSMUSG00000073174 ENSMUST00000189302 Gm29254 3prime_overlapping_ncRNA Interval_159403 chr8 94343391 94343917 + 0 NA intron (ENSMUSG00000031766.4, intron 13 of 23) protein_coding-intron (ENSMUSG00000031766.4, intron 13 of 24) -2161 ENSMUSG00000031766.4 ENSMUSG00000031766 ENSMUST00000211905 Slc12a3 protein_coding Interval_150969 chr7 117006753 117006945 + 0 NA Intergenic Intergenic -54154 ENSMUSG00000064971.1 ENSMUSG00000064971 ENSMUST00000083037 Gm26054 snRNA Interval_168209 chr9 77971097 77971672 + 0 NA intron (ENSMUSG00000032349.13, intron 3 of 5) protein_coding-intron (ENSMUSG00000032349.13, intron 3 of 7) -21215 ENSMUSG00000111610.1 ENSMUSG00000111610 ENSMUST00000216017 Gm34829 lincRNA Interval_82350 chr18 71813677 71814349 + 0 NA intron (ENSMUSG00000060534.16, intron 3 of 28) protein_coding-intron (ENSMUSG00000060534.16, intron 3 of 28) 537028 ENSMUSG00000060534.16 ENSMUSG00000060534 ENSMUST00000126030 Dcc protein_coding Interval_143757 chr7 16129352 16130657 + 0 NA promoter-TSS (ENSMUSG00000030376.8) protein_coding-promoter-TSS (ENSMUSG00000030376.8) 178 ENSMUSG00000030376.8 ENSMUSG00000030376 ENSMUST00000168693 Slc8a2 protein_coding Interval_12152 chr1 190168777 190171035 + 0 NA promoter-TSS (ENSMUSG00000010175.13) protein_coding-promoter-TSS (ENSMUSG00000010175.13) -390 ENSMUSG00000079045.3 ENSMUSG00000079045 ENSMUST00000110279 Prox1os antisense Interval_104160 chr3 59270238 59270973 + 0 NA exon (ENSMUSG00000104550.1, exon 1 of 1) TEC-exon (ENSMUSG00000104550.1, exon 1 of 1) 819 ENSMUSG00000104550.1 ENSMUSG00000104550 ENSMUST00000199400 Gm43589 TEC Interval_64772 chr16 15617703 15618033 + 0 NA Intergenic Intergenic 8761 ENSMUSG00000116140.1 ENSMUSG00000116140 ENSMUST00000230520 Gm7748 processed_pseudogene Interval_15233 chr10 43550631 43552054 + 0 NA intron (ENSMUSG00000111368.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000111368.1, intron 1 of 1) -10376 ENSMUSG00000019797.11 ENSMUSG00000019797 ENSMUST00000214198 Mtres1 protein_coding Interval_100029 chr2 166617738 166618407 + 0 NA intron (ENSMUSG00000039621.13, intron 4 of 37) protein_coding-intron (ENSMUSG00000039621.13, intron 6 of 39) 37070 ENSMUSG00000093063.1 ENSMUSG00000093063 ENSMUST00000175322 Gm23152 rRNA Interval_142194 chr6 138101734 138102042 + 0 NA Intergenic Intergenic -21972 ENSMUSG00000044378.12 ENSMUSG00000044378 ENSMUST00000154461 Slc15a5 protein_coding Interval_91312 chr2 37702403 37704145 + 0 NA promoter-TSS (ENSMUSG00000026915.16) protein_coding-promoter-TSS (ENSMUSG00000026915.16) -14990 ENSMUSG00000092958.1 ENSMUSG00000092958 ENSMUST00000175217 Mir5128 miRNA Interval_131008 chr5 134521803 134523225 + 0 NA intron (ENSMUSG00000063146.11, intron 3 of 16) protein_coding-intron (ENSMUSG00000063146.11, intron 3 of 15) -1725 ENSMUSG00000106691.1 ENSMUSG00000106691 ENSMUST00000202895 2700029L08Rik TEC Interval_94261 chr2 87084644 87084845 + 0 NA Intergenic Intergenic -1359 ENSMUSG00000110886.1 ENSMUSG00000110886 ENSMUST00000216930 Olfr1108-ps1 unprocessed_pseudogene Interval_7725 chr1 133298194 133299339 + 0 NA exon (ENSMUSG00000041757.17, exon 1 of 2) protein_coding-exon (ENSMUSG00000041757.17, exon 1 of 2) -11061 ENSMUSG00000098306.9 ENSMUSG00000098306 ENSMUST00000183489 Gm28040 protein_coding Interval_72532 chr17 30540375 30541210 + 0 NA intron (ENSMUSG00000118341.1, intron 1 of 6) protein_coding-intron (ENSMUSG00000062202.14, intron 1 of 11) -15889 ENSMUSG00000062202.14 ENSMUSG00000062202 ENSMUST00000236825 Btbd9 protein_coding Interval_59330 chr15 51723872 51724631 + 0 NA Intergenic Intergenic -94616 ENSMUSG00000115563.1 ENSMUSG00000115563 ENSMUST00000227000 Gm34562 lincRNA Interval_45467 chr13 55304449 55305022 + 0 NA intron (ENSMUSG00000021488.8, intron 18 of 20) protein_coding-intron (ENSMUSG00000021488.8, intron 20 of 22) 17211 ENSMUSG00000034789.8 ENSMUSG00000034789 ENSMUST00000223672 Rab24 protein_coding Interval_140348 chr6 116882941 116884656 + 0 NA Intergenic Intergenic -69721 ENSMUSG00000108225.1 ENSMUSG00000108225 ENSMUST00000203978 Gm43926 processed_pseudogene Interval_11160 chr1 179750549 179750827 + 0 NA intron (ENSMUSG00000026491.13, intron 1 of 2) protein_coding-intron (ENSMUSG00000026491.13, intron 33 of 35) -50408 ENSMUSG00000087236.3 ENSMUSG00000087236 ENSMUST00000223392 Kif28 protein_coding Interval_117821 chr4 126415094 126415280 + 0 NA intron (ENSMUSG00000028842.15, intron 2 of 2) protein_coding-intron (ENSMUSG00000028842.15, intron 2 of 18) -10852 ENSMUSG00000028842.15 ENSMUSG00000028842 ENSMUST00000123233 Ago3 protein_coding Interval_124798 chr5 54184361 54184984 + 0 NA Intergenic Intergenic 68815 ENSMUSG00000039156.19 ENSMUSG00000039156 ENSMUST00000202342 Stim2 protein_coding Interval_145661 chr7 36934886 36935687 + 0 NA Intergenic Intergenic -183813 ENSMUSG00000089273.1 ENSMUSG00000089273 ENSMUST00000158648 Gm24550 misc_RNA Interval_147318 chr7 65789926 65790305 + 0 NA Intergenic Intergenic 5256 ENSMUSG00000068480.6 ENSMUSG00000068480 ENSMUST00000089593 Gm7551 processed_pseudogene Interval_37665 chr12 70962158 70962418 + 0 NA TTS (ENSMUSG00000021076.6) protein_coding-TTS (ENSMUSG00000021076.6) -12431 ENSMUSG00000060073.9 ENSMUSG00000060073 ENSMUST00000162898 Psma3 protein_coding Interval_144904 chr7 28857593 28857864 + 0 NA Intergenic Intergenic -6125 ENSMUSG00000053522.11 ENSMUSG00000053522 ENSMUST00000128001 Lgals7 protein_coding Interval_82517 chr18 74829803 74830502 + 0 NA Intergenic Intergenic 36769 ENSMUSG00000036880.10 ENSMUSG00000036880 ENSMUST00000237306 Acaa2 protein_coding Interval_19409 chr10 99017162 99017420 + 0 NA TTS (ENSMUSG00000019943.10) protein_coding-TTS (ENSMUSG00000019943.10) -22181 ENSMUSG00000112660.1 ENSMUSG00000112660 ENSMUST00000219298 Gm48761 TEC Interval_70481 chr17 10530294 10531752 + 0 NA intron (ENSMUSG00000089941.1, intron 1 of 1) protein_coding-intron (ENSMUSG00000037196.6, intron 4 of 4) 34577 ENSMUSG00000089941.1 ENSMUSG00000089941 ENSMUST00000161091 Gm16168 antisense Interval_115523 chr4 100126629 100126827 + 0 NA intron (ENSMUSG00000035305.5, intron 1 of 8) protein_coding-intron (ENSMUSG00000035305.5, intron 1 of 8) 7107 ENSMUSG00000086385.1 ENSMUSG00000086385 ENSMUST00000134206 Gm12701 sense_intronic Interval_64383 chr16 11014285 11014588 + 0 NA intron (ENSMUSG00000022500.15, intron 1 of 2) protein_coding-intron (ENSMUSG00000022500.15, intron 1 of 2) -17520 ENSMUSG00000115992.1 ENSMUSG00000115992 ENSMUST00000229764 Gm10832 lincRNA Interval_132423 chr5 144845925 144846838 + 0 NA exon (ENSMUSG00000045482.16, exon 64 of 70) protein_coding-exon (ENSMUSG00000045482.16, exon 64 of 70) 50435 ENSMUSG00000098822.1 ENSMUSG00000098822 ENSMUST00000183852 Mir7039 miRNA Interval_21426 chr10 128534835 128535086 + 0 NA intron (ENSMUSG00000100548.1, intron 1 of 2) antisense-intron (ENSMUSG00000100548.1, intron 1 of 2) 9632 ENSMUSG00000100548.1 ENSMUSG00000100548 ENSMUST00000188089 Gm29585 antisense Interval_100868 chr2 173009758 173010939 + 0 NA TTS (ENSMUSG00000027509.11) protein_coding-TTS (ENSMUSG00000027509.11) -2113 ENSMUSG00000027509.11 ENSMUSG00000027509 ENSMUST00000138237 Rae1 protein_coding Interval_44471 chr13 45077948 45079271 + 0 NA promoter-TSS (ENSMUSG00000047061.6) TEC-promoter-TSS (ENSMUSG00000047061.6) -83 ENSMUSG00000047061.6 ENSMUSG00000047061 ENSMUST00000054395 Gm9817 TEC Interval_22446 chr11 10216991 10217220 + 0 NA Intergenic Intergenic -22232 ENSMUSG00000082312.1 ENSMUSG00000082312 ENSMUST00000117538 Gm11996 processed_pseudogene Interval_40157 chr12 102064673 102065533 + 0 NA Intergenic Intergenic -64316 ENSMUSG00000041771.14 ENSMUSG00000041771 ENSMUST00000235018 Slc24a4 protein_coding Interval_55925 chr14 102607672 102607966 + 0 NA Intergenic Intergenic 170796 ENSMUSG00000115696.1 ENSMUSG00000115696 ENSMUST00000228104 Gm49292 lincRNA Interval_152899 chr7 139581846 139583143 + 0 NA exon (ENSMUSG00000041309.17, exon 1 of 4) protein_coding-exon (ENSMUSG00000041309.17, exon 1 of 4) 296 ENSMUSG00000041309.17 ENSMUSG00000041309 ENSMUST00000106095 Nkx6-2 protein_coding Interval_64479 chr16 11858984 11860502 + 0 NA intron (ENSMUSG00000065979.12, intron 2 of 2) protein_coding-intron (ENSMUSG00000065979.12, intron 2 of 3) -41620 ENSMUSG00000055015.5 ENSMUSG00000055015 ENSMUST00000068397 Gm9961 lincRNA Interval_44781 chr13 48580346 48580717 + 0 NA intron (ENSMUSG00000038042.11, intron 8 of 8) protein_coding-intron (ENSMUSG00000038042.11, intron 9 of 9) -8147 ENSMUSG00000095214.1 ENSMUSG00000095214 ENSMUST00000104502 Gm25232 snoRNA Interval_173267 chrX 75757935 75759675 + 0 NA intron (ENSMUSG00000087396.7, intron 2 of 10) processed_transcript-intron (ENSMUSG00000087396.7, intron 2 of 8) 35133 ENSMUSG00000081996.1 ENSMUSG00000081996 ENSMUST00000117092 Gm7153 processed_pseudogene Interval_143453 chr7 6909310 6910748 + 0 NA intron (ENSMUSG00000051527.11, intron 4 of 8) protein_coding-intron (ENSMUSG00000051527.11, intron 2 of 7) 9677 ENSMUSG00000109094.1 ENSMUSG00000109094 ENSMUST00000207399 Gm44587 TEC Interval_120586 chr4 149539453 149539689 + 0 NA intron (ENSMUSG00000028988.13, intron 1 of 4) protein_coding-intron (ENSMUSG00000028988.13, intron 1 of 4) 1708 ENSMUSG00000093403.1 ENSMUSG00000093403 ENSMUST00000177217 Mir5616 miRNA Interval_53999 chr14 64216211 64216701 + 0 NA intron (ENSMUSG00000054733.9, intron 4 of 5) protein_coding-intron (ENSMUSG00000054733.9, intron 9 of 10) 100142 ENSMUSG00000114284.1 ENSMUSG00000114284 ENSMUST00000225122 9630015K15Rik antisense Interval_173298 chrX 77524653 77525942 + 0 NA intron (ENSMUSG00000025246.13, intron 1 of 15) protein_coding-intron (ENSMUSG00000025246.13, intron 1 of 15) 14083 ENSMUSG00000025246.13 ENSMUSG00000025246 ENSMUST00000133893 Tbl1x protein_coding Interval_97655 chr2 142253884 142254692 + 0 NA intron (ENSMUSG00000068205.14, intron 6 of 13) protein_coding-intron (ENSMUSG00000068205.14, intron 11 of 17) 77681 ENSMUSG00000068205.14 ENSMUSG00000068205 ENSMUST00000156619 Macrod2 protein_coding Interval_89091 chr2 16168568 16168800 + 0 NA intron (ENSMUSG00000075520.5, intron 35 of 38) protein_coding-intron (ENSMUSG00000075520.5, intron 35 of 38) -145259 ENSMUSG00000103865.1 ENSMUSG00000103865 ENSMUST00000193596 Gm37416 TEC Interval_171146 chr9 114761856 114764146 + 0 NA TTS (ENSMUSG00000032436.17) protein_coding-TTS (ENSMUSG00000032436.17) 12450 ENSMUSG00000032436.17 ENSMUSG00000032436 ENSMUST00000216760 Cmtm7 protein_coding Interval_106385 chr3 95818125 95820303 + 0 NA promoter-TSS (ENSMUSG00000028106.13) protein_coding-promoter-TSS (ENSMUSG00000028106.13) 13594 ENSMUSG00000015748.13 ENSMUSG00000015748 ENSMUST00000161073 Prpf3 protein_coding Interval_113202 chr4 49631222 49632621 + 0 NA promoter-TSS (ENSMUSG00000028309.14) protein_coding-promoter-TSS (ENSMUSG00000028309.14) -139 ENSMUSG00000028309.14 ENSMUSG00000028309 ENSMUST00000138490 Rnf20 protein_coding Interval_54378 chr14 68048225 68051927 + 0 NA intron (ENSMUSG00000114621.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000114621.1, intron 1 of 2) 1254 ENSMUSG00000114621.1 ENSMUSG00000114621 ENSMUST00000223853 Gm31107 lincRNA Interval_48298 chr13 97930755 97931456 + 0 NA exon (ENSMUSG00000021662.11, exon 34 of 36) protein_coding-exon (ENSMUSG00000021662.11, exon 34 of 36) -54443 ENSMUSG00000114474.1 ENSMUSG00000114474 ENSMUST00000225575 Gm34388 lincRNA Interval_142024 chr6 136591267 136591546 + 0 NA intron (ENSMUSG00000030213.12, intron 9 of 14) protein_coding-intron (ENSMUSG00000030213.12, intron 9 of 14) -29226 ENSMUSG00000107760.1 ENSMUSG00000107760 ENSMUST00000204462 Gm44401 TEC Interval_87843 chr19 56422645 56423701 + 0 NA intron (ENSMUSG00000025076.11, intron 2 of 6) protein_coding-intron (ENSMUSG00000025076.11, intron 2 of 6) -2512 ENSMUSG00000025076.11 ENSMUSG00000025076 ENSMUST00000237765 Casp7 protein_coding Interval_4189 chr1 71507297 71507854 + 0 NA Intergenic Intergenic -13761 ENSMUSG00000101617.1 ENSMUSG00000101617 ENSMUST00000186254 Gm6947 processed_pseudogene Interval_143199 chr7 4445013 4445837 + 0 NA promoter-TSS (ENSMUSG00000008435.15) protein_coding-promoter-TSS (ENSMUSG00000008435.15) 201 ENSMUSG00000008435.15 ENSMUSG00000008435 ENSMUST00000154033 Rdh13 protein_coding Interval_114397 chr4 75130382 75131584 + 0 NA Intergenic Intergenic 2271 ENSMUSG00000084311.1 ENSMUSG00000084311 ENSMUST00000121313 Gm11257 processed_pseudogene Interval_45472 chr13 55320946 55322862 + 0 NA promoter-TSS (ENSMUSG00000034789.8) protein_coding-promoter-TSS (ENSMUSG00000034789.8) 42 ENSMUSG00000034789.8 ENSMUSG00000034789 ENSMUST00000223672 Rab24 protein_coding Interval_122362 chr5 21691709 21692818 + 0 NA intron (ENSMUSG00000044968.16, intron 1 of 4) protein_coding-intron (ENSMUSG00000044968.16, intron 1 of 4) 2722 ENSMUSG00000081242.1 ENSMUSG00000081242 ENSMUST00000120619 Gm15719 processed_pseudogene Interval_151402 chr7 122101322 122102227 + 0 NA promoter-TSS (ENSMUSG00000030869.11) protein_coding-promoter-TSS (ENSMUSG00000030869.11) -68 ENSMUSG00000030869.11 ENSMUSG00000030869 ENSMUST00000146022 Ndufab1 protein_coding Interval_74017 chr17 46073436 46075551 + 0 NA intron (ENSMUSG00000117287.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000117287.1, intron 1 of 2) 9773 ENSMUSG00000117287.1 ENSMUSG00000117287 ENSMUST00000233284 Gm36200 lincRNA Interval_29951 chr11 88326620 88327785 + 0 NA Intergenic Intergenic -8458 ENSMUSG00000081304.1 ENSMUSG00000081304 ENSMUST00000117358 Gm11509 processed_pseudogene Interval_21784 chr11 4322195 4322544 + 0 NA Intergenic Intergenic 1886 ENSMUSG00000065627.1 ENSMUSG00000065627 ENSMUST00000083693 Gm24803 snRNA Interval_101331 chr2 180499439 180500628 + 0 NA promoter-TSS (ENSMUSG00000027568.9) protein_coding-promoter-TSS (ENSMUSG00000027568.9) -194 ENSMUSG00000027568.9 ENSMUSG00000027568 ENSMUST00000170448 Ntsr1 protein_coding Interval_166930 chr9 63992334 63993075 + 0 NA intron (ENSMUSG00000036867.7, intron 3 of 4) protein_coding-intron (ENSMUSG00000036867.7, intron 3 of 3) 29328 ENSMUSG00000036867.7 ENSMUSG00000036867 ENSMUST00000179458 Smad6 protein_coding Interval_97760 chr2 143899754 143900393 + 0 NA Intergenic Intergenic -15247 ENSMUSG00000015932.8 ENSMUSG00000015932 ENSMUST00000103172 Dstn protein_coding Interval_27470 chr11 68066134 68066333 + 0 NA intron (ENSMUSG00000020903.13, intron 5 of 6) protein_coding-intron (ENSMUSG00000020903.13, intron 6 of 7) 12898 ENSMUSG00000089599.1 ENSMUSG00000089599 ENSMUST00000158974 Gm26157 rRNA Interval_135891 chr6 48486792 48488162 + 0 NA promoter-TSS (ENSMUSG00000029797.13) protein_coding-promoter-TSS (ENSMUSG00000029797.13) -24961 ENSMUSG00000107476.3 ENSMUSG00000107476 ENSMUST00000205224 Zfp862-ps transcribed_unitary_pseudogene Interval_66733 chr16 36782753 36782963 + 0 NA promoter-TSS (ENSMUSG00000022899.9) protein_coding-promoter-TSS (ENSMUSG00000022899.9) 4024 ENSMUSG00000091786.1 ENSMUSG00000091786 ENSMUST00000171395 Gm8425 processed_pseudogene Interval_57294 chr15 8577501 8578249 + 0 NA Intergenic Intergenic -48284 ENSMUSG00000115577.1 ENSMUSG00000115577 ENSMUST00000228699 Gm49250 processed_pseudogene Interval_19314 chr10 96616420 96618538 + 0 NA promoter-TSS (ENSMUSG00000036478.8) protein_coding-promoter-TSS (ENSMUSG00000036478.8) -75 ENSMUSG00000036478.8 ENSMUSG00000036478 ENSMUST00000218953 Btg1 protein_coding Interval_97441 chr2 136386968 136388444 + 0 NA exon (ENSMUSG00000039913.12, exon 1 of 11) protein_coding-exon (ENSMUSG00000039913.12, exon 1 of 11) 261 ENSMUSG00000039913.12 ENSMUSG00000039913 ENSMUST00000143329 Pak7 protein_coding Interval_42576 chr13 15714345 15715400 + 0 NA intron (ENSMUSG00000021318.15, intron 11 of 11) protein_coding-intron (ENSMUSG00000021318.15, intron 11 of 14) 55248 ENSMUSG00000113309.1 ENSMUSG00000113309 ENSMUST00000222341 Gm48408 TEC Interval_27391 chr11 67235449 67236061 + 0 NA intron (ENSMUSG00000085348.1, intron 1 of 1) antisense-intron (ENSMUSG00000085348.1, intron 2 of 3) 1526 ENSMUSG00000085348.1 ENSMUSG00000085348 ENSMUST00000149070 Myhas antisense Interval_157048 chr8 64777636 64778972 + 0 NA intron (ENSMUSG00000031605.8, intron 5 of 13) protein_coding-intron (ENSMUSG00000031605.8, intron 5 of 14) 30834 ENSMUSG00000109879.1 ENSMUSG00000109879 ENSMUST00000210294 Gm10997 TEC Interval_69996 chr17 4186984 4187232 + 0 NA Intergenic Intergenic -65006 ENSMUSG00000116615.1 ENSMUSG00000116615 ENSMUST00000231319 4930548J01Rik processed_transcript Interval_51271 chr14 25660518 25661932 + 0 NA intron (ENSMUSG00000007817.15, intron 22 of 23) protein_coding-intron (ENSMUSG00000007817.15, intron 22 of 23) -32969 ENSMUSG00000021868.7 ENSMUSG00000021868 ENSMUST00000223872 Ppif protein_coding Interval_52963 chr14 52327483 52328541 + 0 NA intron (ENSMUSG00000049532.11, intron 1 of 1) protein_coding-intron (ENSMUSG00000049532.11, intron 1 of 1) -11689 ENSMUSG00000049532.11 ENSMUSG00000049532 ENSMUST00000058326 Sall2 protein_coding Interval_97209 chr2 132262466 132263998 + 0 NA promoter-TSS (ENSMUSG00000058793.14) protein_coding-promoter-TSS (ENSMUSG00000058793.14) -9 ENSMUSG00000058793.14 ENSMUSG00000058793 ENSMUST00000138194 Cds2 protein_coding Interval_152846 chr7 138776596 138777357 + 0 NA Intergenic Intergenic -43769 ENSMUSG00000110241.1 ENSMUSG00000110241 ENSMUST00000211620 Gm45506 processed_pseudogene Interval_161494 chr8 120718908 120719826 + 0 NA intron (ENSMUSG00000092329.1, intron 1 of 15) protein_coding-intron (ENSMUSG00000092329.1, intron 1 of 15) -1613 ENSMUSG00000088416.1 ENSMUSG00000088416 ENSMUST00000157791 Gm24239 misc_RNA Interval_96103 chr2 119777429 119777623 + 0 NA TTS (ENSMUSG00000034032.15) protein_coding-TTS (ENSMUSG00000034032.15) 9994 ENSMUSG00000034032.15 ENSMUSG00000034032 ENSMUST00000141800 Rpap1 protein_coding Interval_86543 chr19 41595192 41595672 + 0 NA Intergenic Intergenic 6781 ENSMUSG00000098286.1 ENSMUSG00000098286 ENSMUST00000183602 Mir8091 miRNA Interval_36768 chr12 53466083 53466312 + 0 NA intron (ENSMUSG00000021010.9, intron 2 of 11) protein_coding-intron (ENSMUSG00000021010.9, intron 2 of 11) -156351 ENSMUSG00000113179.1 ENSMUSG00000113179 ENSMUST00000221214 1700030L22Rik antisense Interval_32352 chr11 107109841 107110127 + 0 NA intron (ENSMUSG00000040481.17, intron 2 of 29) protein_coding-intron (ENSMUSG00000040481.17, intron 2 of 27) -47424 ENSMUSG00000087596.1 ENSMUSG00000087596 ENSMUST00000129501 Gm11715 antisense Interval_14698 chr10 39118481 39118761 + 0 NA TTS (ENSMUSG00000051736.8) protein_coding-TTS (ENSMUSG00000051736.8) 12840 ENSMUSG00000019846.11 ENSMUSG00000019846 ENSMUST00000163036 Lama4 protein_coding Interval_103435 chr3 41555015 41558162 + 0 NA intron (ENSMUSG00000025764.14, intron 1 of 5) protein_coding-intron (ENSMUSG00000025764.14, intron 1 of 10) 828 ENSMUSG00000025764.14 ENSMUSG00000025764 ENSMUST00000192300 Jade1 protein_coding Interval_158938 chr8 88109150 88109472 + 0 NA promoter-TSS (ENSMUSG00000118626.1) processed_pseudogene-promoter-TSS (ENSMUSG00000118626.1) -475 ENSMUSG00000118626.1 ENSMUSG00000118626 ENSMUST00000239289 AC127285.1 processed_pseudogene Interval_133522 chr6 6138961 6141047 + 0 NA intron (ENSMUSG00000015112.15, intron 4 of 17) protein_coding-intron (ENSMUSG00000015112.15, intron 4 of 17) 33947 ENSMUSG00000015112.15 ENSMUSG00000015112 ENSMUST00000177698 Slc25a13 protein_coding Interval_133434 chr6 4998714 4998916 + 0 NA intron (ENSMUSG00000032827.15, intron 1 of 17) protein_coding-intron (ENSMUSG00000032827.15, intron 2 of 15) 39832 ENSMUSG00000097396.1 ENSMUSG00000097396 ENSMUST00000180645 Gm26556 TEC Interval_63500 chr15 101485548 101485783 + 0 NA intron (ENSMUSG00000067613.6, intron 4 of 4) protein_coding-intron (ENSMUSG00000067613.6, intron 8 of 8) 2403 ENSMUSG00000067613.6 ENSMUSG00000067613 ENSMUST00000159029 Krt83 protein_coding Interval_88315 chr2 3668550 3670256 + 0 NA intron (ENSMUSG00000026655.15, intron 2 of 4) protein_coding-intron (ENSMUSG00000026655.15, intron 2 of 4) 11187 ENSMUSG00000080703.2 ENSMUSG00000080703 ENSMUST00000118615 Gm13183 processed_pseudogene Interval_53227 chr14 55345145 55345409 + 0 NA Intergenic Intergenic 5413 ENSMUSG00000115125.1 ENSMUSG00000115125 ENSMUST00000227916 Gm6852 processed_pseudogene Interval_118860 chr4 134108249 134108608 + 0 NA promoter-TSS (ENSMUSG00000012126.16) protein_coding-promoter-TSS (ENSMUSG00000012126.16) 5810 ENSMUSG00000012126.16 ENSMUSG00000012126 ENSMUST00000151407 Ubxn11 protein_coding Interval_107394 chr3 107269356 107269730 + 0 NA Intergenic Intergenic -9456 ENSMUSG00000087260.5 ENSMUSG00000087260 ENSMUST00000199317 Lamtor5 protein_coding Interval_164606 chr9 39968330 39968554 + 0 NA Intergenic Intergenic 6379 ENSMUSG00000111073.1 ENSMUSG00000111073 ENSMUST00000217438 Olfr977-ps1 polymorphic_pseudogene Interval_135021 chr6 34716348 34717939 + 0 NA intron (ENSMUSG00000029761.16, intron 1 of 12) protein_coding-intron (ENSMUSG00000029761.16, intron 1 of 12) 9763 ENSMUSG00000060411.3 ENSMUSG00000060411 ENSMUST00000075773 Npn2 antisense Interval_128552 chr5 113971738 113973576 + 0 NA intron (ENSMUSG00000042121.16, intron 2 of 3) protein_coding-intron (ENSMUSG00000042121.16, intron 1 of 13) -5901 ENSMUSG00000042121.16 ENSMUSG00000042121 ENSMUST00000162322 Ssh1 protein_coding Interval_115036 chr4 88763027 88764578 + 0 NA promoter-TSS (ENSMUSG00000082789.3) unprocessed_pseudogene-promoter-TSS (ENSMUSG00000082789.3) 93 ENSMUSG00000082789.3 ENSMUSG00000082789 ENSMUST00000121020 Gm13284 unprocessed_pseudogene Interval_154649 chr8 22311406 22311695 + 0 NA intron (ENSMUSG00000031481.8, intron 8 of 28) protein_coding-intron (ENSMUSG00000031481.8, intron 8 of 27) 28109 ENSMUSG00000031481.8 ENSMUSG00000031481 ENSMUST00000077194 Tpte protein_coding Interval_14477 chr10 34187860 34188102 + 0 NA intron (ENSMUSG00000039497.8, intron 1 of 2) protein_coding-intron (ENSMUSG00000039497.8, intron 1 of 5) -8053 ENSMUSG00000111361.1 ENSMUSG00000111361 ENSMUST00000213617 Gm47445 TEC Interval_1414 chr1 21602497 21602730 + 0 NA intron (ENSMUSG00000028033.16, intron 1 of 11) protein_coding-intron (ENSMUSG00000028033.16, intron 1 of 13) -89557 ENSMUSG00000082935.3 ENSMUSG00000082935 ENSMUST00000119064 Gm7658 processed_pseudogene Interval_15139 chr10 42848342 42849416 + 0 NA Intergenic Intergenic -11664 ENSMUSG00000044770.14 ENSMUSG00000044770 ENSMUST00000127675 Scml4 protein_coding Interval_10591 chr1 172069927 172070734 + 0 NA intron (ENSMUSG00000003458.12, intron 9 of 15) protein_coding-intron (ENSMUSG00000003458.12, intron 10 of 16) 12465 ENSMUSG00000003458.12 ENSMUSG00000003458 ENSMUST00000142825 Ncstn protein_coding Interval_110939 chr4 10613686 10614073 + 0 NA intron (ENSMUSG00000086080.7, intron 1 of 3) lincRNA-intron (ENSMUSG00000086080.7, intron 1 of 3) 33067 ENSMUSG00000081361.1 ENSMUSG00000081361 ENSMUST00000118586 Gm11813 processed_pseudogene Interval_5514 chr1 89473629 89475828 + 0 NA intron (ENSMUSG00000055013.16, intron 1 of 16) protein_coding-intron (ENSMUSG00000055013.16, intron 1 of 17) -8710 ENSMUSG00000104114.1 ENSMUSG00000104114 ENSMUST00000192974 Gm37297 TEC Interval_7553 chr1 132168021 132168604 + 0 NA Intergenic Intergenic -23145 ENSMUSG00000118219.1 ENSMUSG00000118219 ENSMUST00000188175 Gm29695 protein_coding Interval_114426 chr4 76036779 76037509 + 0 NA intron (ENSMUSG00000028399.18, intron 20 of 30) protein_coding-intron (ENSMUSG00000028399.18, intron 19 of 29) 47313 ENSMUSG00000028399.18 ENSMUSG00000028399 ENSMUST00000134604 Ptprd protein_coding Interval_64669 chr16 14021034 14021969 + 0 NA intron (ENSMUSG00000044117.12, intron 1 of 3) protein_coding-intron (ENSMUSG00000044117.12, intron 1 of 5) -9785 ENSMUSG00000082554.1 ENSMUSG00000082554 ENSMUST00000120696 Gm15806 processed_pseudogene Interval_132922 chr5 148752129 148752703 + 0 NA TTS (ENSMUSG00000084513.1) rRNA-TTS (ENSMUSG00000084513.1) 1024 ENSMUSG00000084513.1 ENSMUSG00000084513 ENSMUST00000122564 n-R5s179 rRNA Interval_81280 chr18 57360094 57360793 + 0 NA intron (ENSMUSG00000024594.9, intron 2 of 4) protein_coding-intron (ENSMUSG00000024594.9, intron 1 of 8) 5553 ENSMUSG00000024594.9 ENSMUSG00000024594 ENSMUST00000236709 Prrc1 protein_coding Interval_173558 chrX 99335799 99337086 + 0 NA Intergenic Intergenic 82453 ENSMUSG00000085053.1 ENSMUSG00000085053 ENSMUST00000152025 Gm14809 lincRNA Interval_133066 chr5 149605537 149605780 + 0 NA intron (ENSMUSG00000029658.17, intron 21 of 22) protein_coding-intron (ENSMUSG00000029658.17, intron 21 of 22) 30680 ENSMUSG00000029657.15 ENSMUSG00000029657 ENSMUST00000201666 Hsph1 protein_coding Interval_70015 chr17 4503094 4503767 + 0 NA Intergenic Intergenic -131548 ENSMUSG00000116767.1 ENSMUSG00000116767 ENSMUST00000232624 4930517M08Rik lincRNA Interval_144436 chr7 25145870 25146328 + 0 NA intron (ENSMUSG00000008496.19, intron 2 of 4) protein_coding-intron (ENSMUSG00000008496.19, intron 2 of 4) -8970 ENSMUSG00000074274.7 ENSMUSG00000074274 ENSMUST00000186424 D930028M14Rik lincRNA Interval_102302 chr3 21524463 21524974 + 0 NA Intergenic Intergenic -79092 ENSMUSG00000106085.1 ENSMUSG00000106085 ENSMUST00000199468 Gm43675 unprocessed_pseudogene Interval_136305 chr6 52801801 52802996 + 0 NA intron (ENSMUSG00000063568.11, intron 3 of 4) protein_coding-intron (ENSMUSG00000063568.11, intron 3 of 4) 41303 ENSMUSG00000081872.1 ENSMUSG00000081872 ENSMUST00000119248 Gm15572 processed_pseudogene Interval_120719 chr4 150257332 150257896 + 0 NA Intergenic Intergenic 10154 ENSMUSG00000063524.13 ENSMUSG00000063524 ENSMUST00000136310 Eno1 protein_coding Interval_162155 chr8 125553251 125553522 + 0 NA intron (ENSMUSG00000001995.9, intron 1 of 22) protein_coding-intron (ENSMUSG00000001995.9, intron 1 of 21) 16422 ENSMUSG00000001995.9 ENSMUSG00000001995 ENSMUST00000212604 Sipa1l2 protein_coding Interval_33098 chr11 114419089 114419459 + 0 NA intron (ENSMUSG00000062391.3, intron 2 of 2) lincRNA-intron (ENSMUSG00000062391.3, intron 1 of 1) 29586 ENSMUSG00000062391.3 ENSMUSG00000062391 ENSMUST00000141088 4932435O22Rik lincRNA Interval_8790 chr1 151119161 151119853 + 0 NA Intergenic Intergenic 11592 ENSMUSG00000100595.1 ENSMUSG00000100595 ENSMUST00000191430 Gm19087 processed_pseudogene Interval_56600 chr14 120728270 120728922 + 0 NA Intergenic Intergenic 15518 ENSMUSG00000115630.1 ENSMUSG00000115630 ENSMUST00000226406 Rpl19-ps5 processed_pseudogene Interval_20180 chr10 115452304 115453238 + 0 NA exon (ENSMUSG00000020140.15, exon 18 of 18) protein_coding-exon (ENSMUSG00000020140.15, exon 18 of 18) 24264 ENSMUSG00000034163.10 ENSMUSG00000034163 ENSMUST00000141246 Zfc3h1 protein_coding Interval_88535 chr2 5900305 5900810 + 0 NA TTS (ENSMUSG00000085818.7) antisense-TTS (ENSMUSG00000085818.7) 4957 ENSMUSG00000085818.7 ENSMUSG00000085818 ENSMUST00000150099 Gm13267 antisense Interval_55846 chr14 101445249 101446149 + 0 NA intron (ENSMUSG00000033083.16, intron 20 of 20) protein_coding-intron (ENSMUSG00000033083.16, intron 18 of 18) 102155 ENSMUSG00000115538.1 ENSMUSG00000115538 ENSMUST00000227762 Hspd1-ps5 processed_pseudogene Interval_162210 chr8 125995012 125996269 + 0 NA exon (ENSMUSG00000033998.9, exon 1 of 3) protein_coding-exon (ENSMUSG00000033998.9, exon 1 of 3) 204 ENSMUSG00000033998.9 ENSMUSG00000033998 ENSMUST00000212831 Kcnk1 protein_coding Interval_105956 chr3 90300138 90300642 + 0 NA intron (ENSMUSG00000042390.9, intron 1 of 10) protein_coding-intron (ENSMUSG00000042390.9, intron 1 of 9) -6407 ENSMUSG00000105350.1 ENSMUSG00000105350 ENSMUST00000200437 4930537H20Rik antisense Interval_4986 chr1 83714670 83714960 + 0 NA intron (ENSMUSG00000100580.6, intron 3 of 4) lincRNA-intron (ENSMUSG00000100580.6, intron 3 of 4) -81097 ENSMUSG00000094946.1 ENSMUSG00000094946 ENSMUST00000178653 Gm25754 miRNA Interval_5600 chr1 90113865 90115357 + 0 NA intron (ENSMUSG00000026301.16, intron 6 of 18) protein_coding-intron (ENSMUSG00000026301.16, intron 6 of 18) -39017 ENSMUSG00000100850.1 ENSMUSG00000100850 ENSMUST00000190254 4930434B07Rik lincRNA Interval_78690 chr18 17418599 17419408 + 0 NA Intergenic Intergenic 161987 ENSMUSG00000117615.1 ENSMUSG00000117615 ENSMUST00000234987 4930545E07Rik lincRNA Interval_96286 chr2 121304975 121306703 + 0 NA exon (ENSMUSG00000027254.13, exon 5 of 7) protein_coding-exon (ENSMUSG00000027254.13, exon 5 of 7) -9831 ENSMUSG00000087704.1 ENSMUSG00000087704 ENSMUST00000129000 Gm14978 antisense Interval_95358 chr2 106906567 106906799 + 0 NA Intergenic Intergenic -10088 ENSMUSG00000085530.1 ENSMUSG00000085530 ENSMUST00000137252 Gm13901 processed_pseudogene Interval_149666 chr7 100511400 100512215 + 0 NA promoter-TSS (ENSMUSG00000030708.14) protein_coding-promoter-TSS (ENSMUSG00000030708.14) 3153 ENSMUSG00000030708.14 ENSMUSG00000030708 ENSMUST00000154516 Dnajb13 protein_coding Interval_158898 chr8 87811591 87812217 + 0 NA intron (ENSMUSG00000045333.15, intron 3 of 3) protein_coding-intron (ENSMUSG00000045333.15, intron 2 of 6) 141958 ENSMUSG00000045333.15 ENSMUSG00000045333 ENSMUST00000173092 Zfp423 protein_coding Interval_146590 chr7 47104342 47104537 + 0 NA intron (ENSMUSG00000030854.17, intron 2 of 12) protein_coding-intron (ENSMUSG00000030854.17, intron 2 of 13) -6412 ENSMUSG00000109501.1 ENSMUSG00000109501 ENSMUST00000207045 Gm14377 antisense Interval_110265 chr3 155128274 155128704 + 0 NA intron (ENSMUSG00000028182.14, intron 4 of 5) protein_coding-intron (ENSMUSG00000028182.14, intron 4 of 7) 33624 ENSMUSG00000104122.1 ENSMUSG00000104122 ENSMUST00000194899 Gm37482 TEC Interval_148567 chr7 82725403 82725793 + 0 NA intron (ENSMUSG00000038563.14, intron 15 of 19) protein_coding-intron (ENSMUSG00000038563.14, intron 15 of 19) 10006 ENSMUSG00000108984.1 ENSMUSG00000108984 ENSMUST00000208664 Gm44916 TEC Interval_165979 chr9 55148704 55150307 + 0 NA promoter-TSS (ENSMUSG00000032307.16) protein_coding-promoter-TSS (ENSMUSG00000032307.16) -45340 ENSMUSG00000032307.16 ENSMUSG00000032307 ENSMUST00000148468 Ube2q2 protein_coding Interval_128725 chr5 114935973 114936266 + 0 NA promoter-TSS (ENSMUSG00000041827.15) protein_coding-promoter-TSS (ENSMUSG00000041827.15) -6085 ENSMUSG00000029559.15 ENSMUSG00000029559 ENSMUST00000131771 2210016L21Rik protein_coding Interval_15899 chr10 59072088 59072830 + 0 NA intron (ENSMUSG00000037990.18, intron 5 of 9) protein_coding-intron (ENSMUSG00000037990.18, intron 2 of 5) 106916 ENSMUSG00000098653.1 ENSMUSG00000098653 ENSMUST00000183751 Gm27672 miRNA Interval_123743 chr5 35096874 35097514 + 0 NA intron (ENSMUSG00000029103.16, intron 2 of 4) protein_coding-intron (ENSMUSG00000029103.16, intron 5 of 7) 5320 ENSMUSG00000029103.16 ENSMUSG00000029103 ENSMUST00000132754 Lrpap1 protein_coding Interval_163472 chr9 21601923 21602423 + 0 NA Intergenic Intergenic 6154 ENSMUSG00000111812.1 ENSMUSG00000111812 ENSMUST00000217049 Gm7904 processed_pseudogene Interval_110097 chr3 153262191 153262437 + 0 NA intron (ENSMUSG00000052544.9, intron 3 of 4) protein_coding-intron (ENSMUSG00000052544.9, intron 2 of 2) 36335 ENSMUSG00000105023.1 ENSMUSG00000105023 ENSMUST00000197231 1700012D16Rik sense_intronic Interval_147718 chr7 72774410 72776188 + 0 NA Intergenic Intergenic -61678 ENSMUSG00000098195.1 ENSMUSG00000098195 ENSMUST00000183257 Gm7693 processed_pseudogene Interval_138492 chr6 88644571 88645277 + 0 NA Intergenic Intergenic -26402 ENSMUSG00000033182.12 ENSMUSG00000033182 ENSMUST00000184664 Kbtbd12 protein_coding Interval_159923 chr8 105215284 105215692 + 0 NA intron (ENSMUSG00000031885.14, intron 5 of 5) protein_coding-intron (ENSMUSG00000031885.14, intron 5 of 5) -9718 ENSMUSG00000031889.9 ENSMUSG00000031889 ENSMUST00000133035 D230025D16Rik protein_coding Interval_159565 chr8 95478912 95479123 + 0 NA intron (ENSMUSG00000046707.9, intron 1 of 8) protein_coding-intron (ENSMUSG00000046707.9, intron 2 of 11) 4606 ENSMUSG00000110635.1 ENSMUSG00000110635 ENSMUST00000212310 Gm45853 TEC Interval_95075 chr2 103730909 103731206 + 0 NA TTS (ENSMUSG00000027185.15) protein_coding-TTS (ENSMUSG00000027185.15) 16022 ENSMUSG00000032724.5 ENSMUSG00000032724 ENSMUST00000131122 Abtb2 protein_coding Interval_163404 chr9 21279274 21279671 + 0 NA exon (ENSMUSG00000035047.9, exon 12 of 19) protein_coding-exon (ENSMUSG00000035047.9, exon 12 of 19) 8484 ENSMUSG00000035047.9 ENSMUSG00000035047 ENSMUST00000183665 Kri1 protein_coding Interval_28665 chr11 77641134 77641695 + 0 NA Intergenic Intergenic 1560 ENSMUSG00000082646.1 ENSMUSG00000082646 ENSMUST00000121688 Gm12732 processed_pseudogene Interval_45474 chr13 55327746 55328115 + 0 NA intron (ENSMUSG00000021485.14, intron 3 of 4) protein_coding-intron (ENSMUSG00000021485.14, intron 4 of 5) 1893 ENSMUSG00000021485.14 ENSMUSG00000021485 ENSMUST00000141644 Mxd3 protein_coding Interval_114122 chr4 63664886 63665072 + 0 NA Intergenic Intergenic -1600 ENSMUSG00000099294.1 ENSMUSG00000099294 ENSMUST00000184810 Gm11214 protein_coding Interval_98892 chr2 155834656 155835038 + 0 NA promoter-TSS (ENSMUSG00000074647.4) protein_coding-promoter-TSS (ENSMUSG00000074647.4) 7 ENSMUSG00000074647.4 ENSMUSG00000074647 ENSMUST00000239423 Fam83c protein_coding Interval_31144 chr11 98412149 98413330 + 0 NA intron (ENSMUSG00000062312.5, intron 1 of 25) protein_coding-intron (ENSMUSG00000062312.5, intron 1 of 26) 10641 ENSMUSG00000089223.1 ENSMUSG00000089223 ENSMUST00000158598 Gm25048 snRNA Interval_43699 chr13 35189023 35189679 + 0 NA exon (ENSMUSG00000113770.1, exon 4 of 4) lincRNA-exon (ENSMUSG00000113770.1, exon 4 of 4) 19002 ENSMUSG00000102099.2 ENSMUSG00000102099 ENSMUST00000221261 1700011B04Rik processed_transcript Interval_136238 chr6 52225198 52226074 + 0 NA exon (ENSMUSG00000038227.15, exon 1 of 2) protein_coding-exon (ENSMUSG00000038227.15, exon 1 of 2) 4529 ENSMUSG00000065443.1 ENSMUSG00000065443 ENSMUST00000083509 Mir196b miRNA Interval_133712 chr6 9320115 9320314 + 0 NA Intergenic Intergenic 173448 ENSMUSG00000107851.1 ENSMUSG00000107851 ENSMUST00000203681 Gm35736 processed_pseudogene Interval_70599 chr17 12223750 12224055 + 0 NA Intergenic Intergenic 33981 ENSMUSG00000063911.4 ENSMUSG00000063911 ENSMUST00000074412 Tdgf1-ps2 processed_pseudogene Interval_55159 chr14 78724372 78726082 + 0 NA promoter-TSS (ENSMUSG00000034731.11) protein_coding-promoter-TSS (ENSMUSG00000034731.11) 21417 ENSMUSG00000115107.1 ENSMUSG00000115107 ENSMUST00000228480 Gm18368 processed_pseudogene Interval_30843 chr11 96829378 96830678 + 0 NA promoter-TSS (ENSMUSG00000038615.17) protein_coding-promoter-TSS (ENSMUSG00000038615.17) -5901 ENSMUSG00000038615.17 ENSMUSG00000038615 ENSMUST00000135836 Nfe2l1 protein_coding Interval_129741 chr5 122068545 122068774 + 0 NA Intergenic Intergenic 20277 ENSMUSG00000087386.1 ENSMUSG00000087386 ENSMUST00000135544 Gm15637 antisense Interval_83576 chr18 89991863 89992251 + 0 NA Intergenic Intergenic 27022 ENSMUSG00000118035.1 ENSMUSG00000118035 ENSMUST00000237041 Gm6173 processed_pseudogene Interval_139500 chr6 100571656 100572268 + 0 NA exon (ENSMUSG00000035378.17, exon 11 of 11) protein_coding-exon (ENSMUSG00000035378.17, exon 11 of 11) -32721 ENSMUSG00000079224.5 ENSMUSG00000079224 ENSMUST00000121217 Gm6565 processed_pseudogene Interval_116980 chr4 118630037 118630761 + 0 NA Intergenic Intergenic 5663 ENSMUSG00000085292.1 ENSMUSG00000085292 ENSMUST00000134971 Gm12853 antisense Interval_110887 chr4 9577474 9577859 + 0 NA intron (ENSMUSG00000028207.18, intron 3 of 3) protein_coding-intron (ENSMUSG00000028207.18, intron 13 of 23) 66051 ENSMUSG00000028207.18 ENSMUSG00000028207 ENSMUST00000130617 Asph protein_coding Interval_131303 chr5 136274577 136275791 + 0 NA exon (ENSMUSG00000029705.17, exon 24 of 24) protein_coding-exon (ENSMUSG00000029705.17, exon 24 of 24) 188 ENSMUSG00000086220.1 ENSMUSG00000086220 ENSMUST00000148082 Gm16599 antisense Interval_24758 chr11 36899281 36899505 + 0 NA intron (ENSMUSG00000049336.16, intron 1 of 28) protein_coding-intron (ENSMUSG00000049336.16, intron 1 of 28) 44773 ENSMUSG00000049336.16 ENSMUSG00000049336 ENSMUST00000157030 Tenm2 protein_coding Interval_63437 chr15 101088213 101088805 + 0 NA Intergenic Intergenic -9942 ENSMUSG00000095440.2 ENSMUSG00000095440 ENSMUST00000213610 Fignl2 protein_coding Interval_141686 chr6 133422582 133422811 + 0 NA Intergenic Intergenic -41677 ENSMUSG00000107527.1 ENSMUSG00000107527 ENSMUST00000204228 Gm44239 unprocessed_pseudogene Interval_6841 chr1 120020529 120020901 + 0 NA intron (ENSMUSG00000026387.15, intron 1 of 12) protein_coding-intron (ENSMUSG00000026387.15, intron 1 of 13) 13681 ENSMUSG00000026387.15 ENSMUSG00000026387 ENSMUST00000189037 Sctr protein_coding Interval_86197 chr19 37709996 37710211 + 0 NA Intergenic Intergenic 12018 ENSMUSG00000024987.6 ENSMUSG00000024987 ENSMUST00000236500 Cyp26a1 protein_coding Interval_27943 chr11 71253704 71254582 + 0 NA intron (ENSMUSG00000092528.9, intron 5 of 11) transcribed_unprocessed_pseudogene-intron (ENSMUSG00000092528.9, intron 6 of 12) -20203 ENSMUSG00000094154.1 ENSMUSG00000094154 ENSMUST00000104444 Gm23266 snoRNA Interval_105740 chr3 89087626 89088014 + 0 NA TTS (ENSMUSG00000041263.14) protein_coding-TTS (ENSMUSG00000041263.14) 1921 ENSMUSG00000041263.14 ENSMUSG00000041263 ENSMUST00000196043 Rusc1 protein_coding Interval_130449 chr5 127705210 127706941 + 0 NA intron (ENSMUSG00000049971.17, intron 11 of 11) protein_coding-intron (ENSMUSG00000049971.17, intron 11 of 11) 73813 ENSMUSG00000049971.17 ENSMUSG00000049971 ENSMUST00000134529 Glt1d1 protein_coding Interval_51890 chr14 33369885 33372026 + 0 NA promoter-TSS (ENSMUSG00000087639.1) antisense-promoter-TSS (ENSMUSG00000087639.1) -812 ENSMUSG00000087639.1 ENSMUSG00000087639 ENSMUST00000137359 Gm15512 antisense Interval_89301 chr2 19017439 19018574 + 0 NA Intergenic Intergenic 19663 ENSMUSG00000026736.2 ENSMUSG00000026736 ENSMUST00000238778 4930426L09Rik bidirectional_promoter_lncRNA Interval_75754 chr17 71042427 71043265 + 0 NA intron (ENSMUSG00000024049.15, intron 5 of 17) protein_coding-intron (ENSMUSG00000024049.15, intron 5 of 36) 40213 ENSMUSG00000024049.15 ENSMUSG00000024049 ENSMUST00000233790 Myom1 protein_coding Interval_129331 chr5 119178458 119179345 + 0 NA Intergenic Intergenic 21117 ENSMUSG00000107334.1 ENSMUSG00000107334 ENSMUST00000200918 Gm7538 lincRNA Interval_114232 chr4 69410247 69410878 + 0 NA Intergenic Intergenic -115441 ENSMUSG00000082553.1 ENSMUSG00000082553 ENSMUST00000120872 Gm11404 processed_pseudogene Interval_49252 chr13 109822042 109823140 + 0 NA intron (ENSMUSG00000021699.17, intron 6 of 15) protein_coding-intron (ENSMUSG00000021699.17, intron 5 of 14) -81218 ENSMUSG00000084651.1 ENSMUSG00000084651 ENSMUST00000122702 Mir1904 miRNA Interval_74215 chr17 47511089 47512066 + 0 NA intron (ENSMUSG00000034165.16, intron 1 of 6) protein_coding-intron (ENSMUSG00000034165.16, intron 1 of 6) -9305 ENSMUSG00000023980.7 ENSMUSG00000023980 ENSMUST00000233675 Taf8 protein_coding Interval_45095 chr13 52106010 52106588 + 0 NA intron (ENSMUSG00000113211.1, intron 3 of 7) processed_transcript-intron (ENSMUSG00000113211.1, intron 3 of 7) 7757 ENSMUSG00000113211.1 ENSMUSG00000113211 ENSMUST00000222527 4921525O09Rik processed_transcript Interval_96570 chr2 125803505 125804276 + 0 NA Intergenic Intergenic -43576 ENSMUSG00000035093.16 ENSMUSG00000035093 ENSMUST00000136450 Secisbp2l protein_coding Interval_105336 chr3 85075516 85075867 + 0 NA intron (ENSMUSG00000102805.5, intron 3 of 9) protein_coding-intron (ENSMUSG00000102805.5, intron 3 of 9) 77005 ENSMUSG00000104290.1 ENSMUSG00000104290 ENSMUST00000194445 Gm38041 processed_pseudogene Interval_37741 chr12 71554131 71554691 + 0 NA intron (ENSMUSG00000113630.1, intron 5 of 5) lincRNA-intron (ENSMUSG00000113630.1, intron 2 of 2) -23554 ENSMUSG00000114028.1 ENSMUSG00000114028 ENSMUST00000222033 9630002D21Rik lincRNA Interval_17723 chr10 79748835 79749438 + 0 NA Intergenic Intergenic -2565 ENSMUSG00000020329.12 ENSMUSG00000020329 ENSMUST00000161375 Polrmt protein_coding Interval_1409 chr1 21402062 21403090 + 0 NA exon (ENSMUSG00000028033.16, exon 14 of 14) protein_coding-exon (ENSMUSG00000028033.16, exon 14 of 14) 11670 ENSMUSG00000085679.2 ENSMUSG00000085679 ENSMUST00000126985 Gm16328 processed_pseudogene Interval_99056 chr2 156895485 156895784 + 0 NA intron (ENSMUSG00000080880.1, intron 8 of 11) unprocessed_pseudogene-intron (ENSMUSG00000080880.1, intron 8 of 11) -2516 ENSMUSG00000081616.1 ENSMUSG00000081616 ENSMUST00000120950 Gm14247 processed_pseudogene Interval_43581 chr13 33820935 33821507 + 0 NA Intergenic Intergenic 22187 ENSMUSG00000069248.11 ENSMUSG00000069248 ENSMUST00000145221 Serpinb6e protein_coding Interval_33343 chr11 116037100 116037515 + 0 NA intron (ENSMUSG00000020770.13, intron 1 of 15) protein_coding-intron (ENSMUSG00000020770.13, intron 1 of 15) 6984 ENSMUSG00000020770.13 ENSMUSG00000020770 ENSMUST00000140683 Unk protein_coding Interval_164450 chr9 37114496 37114920 + 0 NA intron (ENSMUSG00000035934.16, intron 1 of 4) protein_coding-intron (ENSMUSG00000035934.16, intron 1 of 12) -3948 ENSMUSG00000110722.1 ENSMUSG00000110722 ENSMUST00000215174 Gm48716 antisense Interval_155044 chr8 25926727 25927206 + 0 NA intron (ENSMUSG00000031576.16, intron 5 of 7) protein_coding-intron (ENSMUSG00000031576.16, intron 24 of 26) 47087 ENSMUSG00000037260.8 ENSMUSG00000037260 ENSMUST00000209420 Hgsnat protein_coding Interval_105081 chr3 81044171 81045114 + 0 NA intron (ENSMUSG00000028019.9, intron 1 of 5) protein_coding-intron (ENSMUSG00000028019.9, intron 1 of 5) -4205 ENSMUSG00000085106.1 ENSMUSG00000085106 ENSMUST00000146657 Gm16000 antisense Interval_145893 chr7 41507152 41508216 + 0 NA Intergenic Intergenic -8267 ENSMUSG00000092592.1 ENSMUSG00000092592 ENSMUST00000094532 Gm20449 protein_coding Interval_42151 chr13 9194836 9195821 + 0 NA Intergenic Intergenic -28209 ENSMUSG00000113936.1 ENSMUSG00000113936 ENSMUST00000222096 Gm8784 processed_pseudogene Interval_90616 chr2 31501653 31503430 + 0 NA intron (ENSMUSG00000076441.9, intron 2 of 3) protein_coding-intron (ENSMUSG00000076441.9, intron 12 of 15) 1815 ENSMUSG00000076441.9 ENSMUSG00000076441 ENSMUST00000130195 Ass1 protein_coding Interval_148956 chr7 90368906 90369350 + 0 NA intron (ENSMUSG00000030616.16, intron 3 of 18) protein_coding-intron (ENSMUSG00000030616.16, intron 3 of 17) 20429 ENSMUSG00000030616.16 ENSMUSG00000030616 ENSMUST00000189194 Sytl2 protein_coding Interval_60428 chr15 73691652 73692149 + 0 NA Intergenic Intergenic 15605 ENSMUSG00000045281.5 ENSMUSG00000045281 ENSMUST00000064166 Gpr20 protein_coding Interval_74053 chr17 46297246 46299179 + 0 NA exon (ENSMUSG00000047428.14, exon 1 of 5) protein_coding-exon (ENSMUSG00000047428.14, exon 1 of 5) 791 ENSMUSG00000047428.14 ENSMUSG00000047428 ENSMUST00000170271 Dlk2 protein_coding Interval_40430 chr12 104837202 104837584 + 0 NA intron (ENSMUSG00000021097.15, intron 1 of 14) protein_coding-intron (ENSMUSG00000021097.15, intron 1 of 12) -19978 ENSMUSG00000021101.2 ENSMUSG00000021101 ENSMUST00000021520 4930408O17Rik lincRNA Interval_98499 chr2 152804269 152805269 + 0 NA intron (ENSMUSG00000007659.18, intron 2 of 2) protein_coding-intron (ENSMUSG00000007659.18, intron 2 of 2) 23766 ENSMUSG00000007659.18 ENSMUSG00000007659 ENSMUST00000156688 Bcl2l1 protein_coding Interval_36255 chr12 40347689 40348861 + 0 NA intron (ENSMUSG00000055917.15, intron 5 of 12) protein_coding-intron (ENSMUSG00000055917.15, intron 4 of 11) -19297 ENSMUSG00000055917.15 ENSMUSG00000055917 ENSMUST00000221847 Zfp277 protein_coding Interval_76076 chr17 74740049 74740235 + 0 NA intron (ENSMUSG00000024078.7, intron 6 of 19) protein_coding-intron (ENSMUSG00000024078.7, intron 6 of 19) -29924 ENSMUSG00000024078.7 ENSMUSG00000024078 ENSMUST00000234264 Ttc27 protein_coding Interval_162424 chr8 128551202 128551672 + 0 NA Intergenic Intergenic -82499 ENSMUSG00000110562.1 ENSMUSG00000110562 ENSMUST00000212641 Gm9204 processed_pseudogene Interval_115417 chr4 98779432 98780182 + 0 NA exon (ENSMUSG00000035407.8, exon 3 of 10) protein_coding-exon (ENSMUSG00000035407.8, exon 3 of 10) -8332 ENSMUSG00000035407.8 ENSMUSG00000035407 ENSMUST00000137270 Kank4 protein_coding Interval_71741 chr17 25808409 25809766 + 0 NA promoter-TSS (ENSMUSG00000025738.8) protein_coding-promoter-TSS (ENSMUSG00000025738.8) -7232 ENSMUSG00000025738.8 ENSMUSG00000025738 ENSMUST00000235694 Fbxl16 protein_coding Interval_128681 chr5 114682789 114683069 + 0 NA intron (ENSMUSG00000011884.13, intron 1 of 4) protein_coding-intron (ENSMUSG00000011884.13, intron 1 of 4) 8012 ENSMUSG00000011884.13 ENSMUSG00000011884 ENSMUST00000112212 Gltp protein_coding Interval_90359 chr2 29972019 29974037 + 0 NA intron (ENSMUSG00000057738.14, intron 2 of 5) protein_coding-intron (ENSMUSG00000057738.14, intron 1 of 54) -7049 ENSMUSG00000057738.14 ENSMUSG00000057738 ENSMUST00000201758 Sptan1 protein_coding Interval_67209 chr16 44451410 44452044 + 0 NA exon (ENSMUSG00000071550.14, exon 26 of 35) protein_coding-exon (ENSMUSG00000071550.14, exon 26 of 35) 56931 ENSMUSG00000071550.14 ENSMUSG00000071550 ENSMUST00000127303 Cfap44 protein_coding Interval_5739 chr1 91354123 91354355 + 0 NA exon (ENSMUSG00000026308.8, exon 2 of 8) protein_coding-exon (ENSMUSG00000026308.8, exon 2 of 8) 3223 ENSMUSG00000026308.8 ENSMUSG00000026308 ENSMUST00000027533 Klhl30 protein_coding Interval_152448 chr7 133067579 133067925 + 0 NA intron (ENSMUSG00000030970.16, intron 2 of 3) protein_coding-intron (ENSMUSG00000030970.16, intron 2 of 10) 52519 ENSMUSG00000110282.1 ENSMUSG00000110282 ENSMUST00000209529 B930086L07Rik TEC Interval_98608 chr2 153560503 153561343 + 0 NA Intergenic Intergenic 68133 ENSMUSG00000079001.1 ENSMUSG00000079001 ENSMUST00000109783 4930404H24Rik protein_coding Interval_130474 chr5 128004330 128005091 + 0 NA intron (ENSMUSG00000034310.8, intron 3 of 8) protein_coding-intron (ENSMUSG00000034310.8, intron 3 of 8) 126179 ENSMUSG00000085328.2 ENSMUSG00000085328 ENSMUST00000164420 Gm17131 unprocessed_pseudogene Interval_167443 chr9 69383962 69384176 + 0 NA exon (ENSMUSG00000032238.17, exon 11 of 11) protein_coding-exon (ENSMUSG00000032238.17, exon 11 of 11) -14579 ENSMUSG00000032235.15 ENSMUSG00000032235 ENSMUST00000147558 Ice2 protein_coding Interval_31353 chr11 100215398 100215641 + 0 NA Intergenic Intergenic -9489 ENSMUSG00000045545.8 ENSMUSG00000045545 ENSMUST00000007272 Krt14 protein_coding Interval_116458 chr4 112908789 112909039 + 0 NA intron (ENSMUSG00000087194.9, intron 26 of 47) protein_coding-intron (ENSMUSG00000087194.9, intron 27 of 48) -14782 ENSMUSG00000085878.1 ENSMUSG00000085878 ENSMUST00000134494 Gm12823 antisense Interval_124710 chr5 53505497 53506327 + 0 NA intron (ENSMUSG00000039191.12, intron 1 of 6) protein_coding-intron (ENSMUSG00000039191.12, intron 1 of 6) 16819 ENSMUSG00000106807.1 ENSMUSG00000106807 ENSMUST00000200950 Gm10441 antisense Interval_7360 chr1 130470498 130470842 + 0 NA TTS (ENSMUSG00000102139.1) TEC-TTS (ENSMUSG00000102139.1) 2698 ENSMUSG00000102139.1 ENSMUSG00000102139 ENSMUST00000195475 Gm37109 TEC Interval_133654 chr6 8116898 8117078 + 0 NA intron (ENSMUSG00000068794.7, intron 13 of 34) protein_coding-intron (ENSMUSG00000068794.7, intron 13 of 34) 63186 ENSMUSG00000068794.7 ENSMUSG00000068794 ENSMUST00000213284 Col28a1 protein_coding Interval_174323 chrX 144374895 144375121 + 0 NA TTS (ENSMUSG00000041718.16) protein_coding-TTS (ENSMUSG00000041718.16) -53753 ENSMUSG00000080922.1 ENSMUSG00000080922 ENSMUST00000121333 Gm2214 processed_pseudogene Interval_68534 chr16 78459438 78459640 + 0 NA Intergenic Intergenic 21000 ENSMUSG00000116539.1 ENSMUSG00000116539 ENSMUST00000231464 Gm49603 TEC Interval_150822 chr7 115092511 115092692 + 0 NA Intergenic Intergenic 27608 ENSMUSG00000108722.1 ENSMUSG00000108722 ENSMUST00000205978 Gm34225 lincRNA Interval_137527 chr6 72892133 72892511 + 0 NA intron (ENSMUSG00000055239.10, intron 1 of 3) protein_coding-intron (ENSMUSG00000055239.10, intron 1 of 6) 3597 ENSMUSG00000107610.1 ENSMUSG00000107610 ENSMUST00000205107 D530018E20Rik TEC Interval_51492 chr14 28459489 28459679 + 0 NA intron (ENSMUSG00000040640.11, intron 1 of 1) protein_coding-intron (ENSMUSG00000040640.11, intron 15 of 15) 4063 ENSMUSG00000040640.11 ENSMUSG00000040640 ENSMUST00000224045 Erc2 protein_coding Interval_7735 chr1 133340226 133341312 + 0 NA Intergenic Intergenic -11140 ENSMUSG00000070645.5 ENSMUSG00000070645 ENSMUST00000112287 Ren1 protein_coding Interval_53043 chr14 53804156 53804639 + 0 NA Intergenic Intergenic -2242 ENSMUSG00000096397.7 ENSMUSG00000096397 ENSMUST00000186545 Trav17 TR_V_gene Interval_31984 chr11 104307110 104307407 + 0 NA TTS (ENSMUSG00000018411.17) protein_coding-TTS (ENSMUSG00000018411.17) -47897 ENSMUSG00000085134.1 ENSMUSG00000085134 ENSMUST00000137561 Gm11659 antisense Interval_138664 chr6 90964498 90964688 + 0 NA intron (ENSMUSG00000034312.15, intron 1 of 15) protein_coding-intron (ENSMUSG00000034312.15, intron 1 of 15) 58774 ENSMUSG00000099662.1 ENSMUSG00000099662 ENSMUST00000117103 Ppp1r2-ps2 processed_pseudogene Interval_137449 chr6 72528331 72528704 + 0 NA Intergenic Intergenic -8481 ENSMUSG00000052631.15 ENSMUSG00000052631 ENSMUST00000159577 Sh2d6 protein_coding Interval_52990 chr14 52791954 52792232 + 0 NA promoter-TSS (ENSMUSG00000096478.3) TR_V_gene-promoter-TSS (ENSMUSG00000096478.3) -223 ENSMUSG00000096478.3 ENSMUSG00000096478 ENSMUST00000178426 Trav9d-1 TR_V_gene Interval_59883 chr15 60693584 60694118 + 0 NA Intergenic Intergenic 10272 ENSMUSG00000077627.1 ENSMUSG00000077627 ENSMUST00000104439 Gm23835 snoRNA Interval_43383 chr13 29931415 29931670 + 0 NA intron (ENSMUSG00000016477.18, intron 1 of 6) protein_coding-intron (ENSMUSG00000016477.18, intron 1 of 6) -8741 ENSMUSG00000086893.1 ENSMUSG00000086893 ENSMUST00000144277 Gm11365 antisense Interval_167784 chr9 72687340 72688128 + 0 NA exon (ENSMUSG00000104273.1, exon 1 of 1) TEC-exon (ENSMUSG00000104273.1, exon 1 of 1) 510 ENSMUSG00000104273.1 ENSMUSG00000104273 ENSMUST00000195338 A530064N14Rik TEC Interval_120970 chr4 151988382 151989402 + 0 NA promoter-TSS (ENSMUSG00000039759.10) protein_coding-promoter-TSS (ENSMUSG00000039759.10) 88 ENSMUSG00000039759.10 ENSMUSG00000039759 ENSMUST00000146471 Thap3 protein_coding Interval_97926 chr2 145822808 145823365 + 0 NA TTS (ENSMUSG00000001768.16) protein_coding-TTS (ENSMUSG00000001768.16) -55200 ENSMUSG00000092758.1 ENSMUSG00000092758 ENSMUST00000175017 Gm25026 miRNA Interval_30399 chr11 94137448 94139654 + 0 NA exon (ENSMUSG00000086003.7, exon 2 of 2) processed_transcript-exon (ENSMUSG00000086003.7, exon 2 of 2) 5049 ENSMUSG00000086003.7 ENSMUSG00000086003 ENSMUST00000125406 B230206L02Rik processed_transcript Interval_46964 chr13 73782139 73783407 + 0 NA intron (ENSMUSG00000017756.9, intron 1 of 6) protein_coding-intron (ENSMUSG00000017756.9, intron 1 of 23) -21836 ENSMUSG00000017756.9 ENSMUSG00000017756 ENSMUST00000221813 Slc12a7 protein_coding Interval_62187 chr15 88685580 88685829 + 0 NA Intergenic Intergenic 33451 ENSMUSG00000022387.17 ENSMUSG00000022387 ENSMUST00000139515 Brd1 protein_coding Interval_155196 chr8 27382221 27382584 + 0 NA intron (ENSMUSG00000031492.13, intron 1 of 4) protein_coding-intron (ENSMUSG00000031492.13, intron 1 of 5) 13634 ENSMUSG00000031492.13 ENSMUSG00000031492 ENSMUST00000079463 Chrnb3 protein_coding Interval_34446 chr12 4212169 4212516 + 0 NA exon (ENSMUSG00000020652.17, exon 7 of 7) protein_coding-exon (ENSMUSG00000020652.17, exon 7 of 7) 4164 ENSMUSG00000020652.17 ENSMUSG00000020652 ENSMUST00000126017 Cenpo protein_coding Interval_113292 chr4 53210603 53210807 + 0 NA intron (ENSMUSG00000087192.7, intron 4 of 7) processed_transcript-intron (ENSMUSG00000087192.7, intron 4 of 7) 6856 ENSMUSG00000087192.7 ENSMUSG00000087192 ENSMUST00000139222 4930412L05Rik processed_transcript Interval_78783 chr18 20605308 20607385 + 0 NA intron (ENSMUSG00000085595.1, intron 1 of 2) antisense-intron (ENSMUSG00000085595.1, intron 1 of 2) 48100 ENSMUSG00000044393.15 ENSMUSG00000044393 ENSMUST00000121837 Dsg2 protein_coding Interval_170237 chr9 106384057 106386327 + 0 NA Intergenic Intergenic 10573 ENSMUSG00000053716.9 ENSMUSG00000053716 ENSMUST00000193878 Dusp7 protein_coding Interval_64977 chr16 17637102 17638055 + 0 NA promoter-TSS (ENSMUSG00000005899.14) protein_coding-promoter-TSS (ENSMUSG00000005899.14) -9122 ENSMUSG00000041617.10 ENSMUSG00000041617 ENSMUST00000183279 Ccdc74a protein_coding Interval_93705 chr2 76000874 76001637 + 0 NA intron (ENSMUSG00000075270.11, intron 19 of 19) protein_coding-intron (ENSMUSG00000075270.11, intron 19 of 19) -19288 ENSMUSG00000075271.4 ENSMUSG00000075271 ENSMUST00000099994 Ttc30a1 protein_coding Interval_80156 chr18 37907978 37909371 + 0 NA intron (ENSMUSG00000024456.16, intron 1 of 27) protein_coding-intron (ENSMUSG00000024456.16, intron 1 of 27) -10732 ENSMUSG00000024456.16 ENSMUSG00000024456 ENSMUST00000129688 Diaph1 protein_coding Interval_125793 chr5 74188592 74188781 + 0 NA Intergenic Intergenic -9205 ENSMUSG00000049907.8 ENSMUSG00000049907 ENSMUST00000201837 Rasl11b protein_coding Interval_150052 chr7 105425054 105426560 + 0 NA promoter-TSS (ENSMUSG00000030898.15) protein_coding-promoter-TSS (ENSMUSG00000030898.15) -10 ENSMUSG00000030898.15 ENSMUSG00000030898 ENSMUST00000181339 Cckbr protein_coding Interval_167962 chr9 75008487 75009776 + 0 NA exon (ENSMUSG00000034858.16, exon 5 of 12) protein_coding-exon (ENSMUSG00000034858.16, exon 5 of 12) -42846 ENSMUSG00000007656.13 ENSMUSG00000007656 ENSMUST00000166549 Arpp19 protein_coding Interval_106200 chr3 94548466 94549956 + 0 NA intron (ENSMUSG00000028136.15, intron 1 of 10) protein_coding-intron (ENSMUSG00000028136.15, intron 2 of 11) -11723 ENSMUSG00000104631.1 ENSMUSG00000104631 ENSMUST00000196327 Gm43774 sense_intronic Interval_61515 chr15 82100831 82101551 + 0 NA intron (ENSMUSG00000068117.10, intron 18 of 30) protein_coding-intron (ENSMUSG00000068117.10, intron 18 of 30) -26787 ENSMUSG00000068114.7 ENSMUSG00000068114 ENSMUST00000229384 Ccdc134 protein_coding Interval_16653 chr10 66846053 66846430 + 0 NA Intergenic Intergenic 8644 ENSMUSG00000112379.1 ENSMUSG00000112379 ENSMUST00000218961 Gm47900 lincRNA Interval_28110 chr11 72907158 72909015 + 0 NA intron (ENSMUSG00000055670.14, intron 43 of 54) protein_coding-intron (ENSMUSG00000055670.14, intron 43 of 54) 26294 ENSMUSG00000065298.1 ENSMUSG00000065298 ENSMUST00000083364 Gm26121 snRNA Interval_164035 chr9 31057453 31057910 + 0 NA TTS (ENSMUSG00000047412.16) protein_coding-TTS (ENSMUSG00000047412.16) 4442 ENSMUSG00000047412.16 ENSMUSG00000047412 ENSMUST00000213202 Zbtb44 protein_coding Interval_122881 chr5 26799862 26800588 + 0 NA Intergenic Intergenic 28280 ENSMUSG00000104733.1 ENSMUSG00000104733 ENSMUST00000196217 Gm29784 processed_pseudogene Interval_12235 chr1 191035487 191036549 + 0 NA promoter-TSS (ENSMUSG00000057072.11) protein_coding-promoter-TSS (ENSMUSG00000057072.11) -621 ENSMUSG00000057072.11 ENSMUSG00000057072 ENSMUST00000077889 Spata45 protein_coding Interval_1330 chr1 20738432 20738905 + 0 NA Intergenic Intergenic 7763 ENSMUSG00000025929.4 ENSMUSG00000025929 ENSMUST00000027061 Il17a protein_coding Interval_13692 chr10 21076883 21077771 + 0 NA intron (ENSMUSG00000019986.17, intron 6 of 6) protein_coding-intron (ENSMUSG00000019986.17, intron 23 of 23) 7482 ENSMUSG00000019986.17 ENSMUSG00000019986 ENSMUST00000215543 Ahi1 protein_coding Interval_56494 chr14 119188780 119189568 + 0 NA intron (ENSMUSG00000053465.6, intron 1 of 1) protein_coding-intron (ENSMUSG00000053465.6, intron 1 of 1) 50833 ENSMUSG00000053465.6 ENSMUSG00000053465 ENSMUST00000065904 Hs6st3 protein_coding Interval_55816 chr14 100484176 100484460 + 0 NA Intergenic Intergenic 24895 ENSMUSG00000115821.1 ENSMUSG00000115821 ENSMUST00000227740 6330576A10Rik lincRNA Interval_143922 chr7 17694818 17695751 + 0 NA Intergenic Intergenic -8971 ENSMUSG00000108638.1 ENSMUSG00000108638 ENSMUST00000206051 Gm45150 processed_pseudogene Interval_102121 chr3 18061033 18061390 + 0 NA Intergenic Intergenic 7037 ENSMUSG00000025128.7 ENSMUSG00000025128 ENSMUST00000026120 Bhlhe22 protein_coding Interval_39869 chr12 99229906 99231073 + 0 NA intron (ENSMUSG00000033713.12, intron 1 of 3) protein_coding-intron (ENSMUSG00000033713.12, intron 4 of 5) -15182 ENSMUSG00000093419.1 ENSMUSG00000093419 ENSMUST00000177490 Gm19898 processed_pseudogene Interval_98328 chr2 151535832 151536698 + 0 NA Intergenic Intergenic 6083 ENSMUSG00000087433.1 ENSMUSG00000087433 ENSMUST00000148705 Gm14167 antisense Interval_141453 chr6 128369968 128370424 + 0 NA promoter-TSS (ENSMUSG00000001517.14) protein_coding-promoter-TSS (ENSMUSG00000001517.14) 2909 ENSMUSG00000001517.14 ENSMUSG00000001517 ENSMUST00000153423 Foxm1 protein_coding Interval_124858 chr5 57127571 57127827 + 0 NA TTS (ENSMUSG00000077333.1) snoRNA-TTS (ENSMUSG00000077333.1) 1073 ENSMUSG00000077333.1 ENSMUSG00000077333 ENSMUST00000104145 Gm23015 snoRNA Interval_114815 chr4 85686458 85686793 + 0 NA intron (ENSMUSG00000066113.16, intron 1 of 3) protein_coding-intron (ENSMUSG00000066113.16, intron 1 of 2) 172453 ENSMUSG00000066113.16 ENSMUSG00000066113 ENSMUST00000107177 Adamtsl1 protein_coding Interval_42810 chr13 19904057 19904291 + 0 NA Intergenic Intergenic -79917 ENSMUSG00000053101.3 ENSMUSG00000053101 ENSMUST00000221268 Gpr141 protein_coding Interval_798 chr1 11427001 11428049 + 0 NA intron (ENSMUSG00000057715.13, intron 1 of 1) protein_coding-intron (ENSMUSG00000057715.13, intron 1 of 13) 10607 ENSMUSG00000103825.1 ENSMUSG00000103825 ENSMUST00000194502 Gm38178 TEC Interval_128045 chr5 110471343 110472253 + 0 NA Intergenic Intergenic 10403 ENSMUSG00000105603.1 ENSMUSG00000105603 ENSMUST00000199828 Gm32996 processed_pseudogene Interval_58305 chr15 32091488 32091972 + 0 NA Intergenic Intergenic 41779 ENSMUSG00000115561.1 ENSMUSG00000115561 ENSMUST00000227417 Gm49285 TEC Interval_50678 chr14 18041262 18041965 + 0 NA Intergenic Intergenic -18662 ENSMUSG00000098478.1 ENSMUSG00000098478 ENSMUST00000183529 Gm27851 snRNA Interval_151668 chr7 125865176 125865668 + 0 NA intron (ENSMUSG00000032743.15, intron 7 of 14) protein_coding-intron (ENSMUSG00000032743.15, intron 20 of 27) 157505 ENSMUSG00000032743.15 ENSMUSG00000032743 ENSMUST00000155059 D430042O09Rik protein_coding Interval_38434 chr12 79014761 79016456 + 0 NA Intergenic Intergenic -8268 ENSMUSG00000046157.13 ENSMUSG00000046157 ENSMUST00000173095 Tmem229b protein_coding Interval_108380 chr3 126448567 126450029 + 0 NA Intergenic Intergenic 1555 ENSMUSG00000105233.1 ENSMUSG00000105233 ENSMUST00000197129 Gm20568 processed_pseudogene Interval_163002 chr9 14386857 14387073 + 0 NA intron (ENSMUSG00000111786.1, intron 2 of 2) lincRNA-intron (ENSMUSG00000111786.1, intron 2 of 2) 1273 ENSMUSG00000111786.1 ENSMUSG00000111786 ENSMUST00000215810 Gm47319 lincRNA Interval_114541 chr4 82396547 82397079 + 0 NA intron (ENSMUSG00000008575.17, intron 2 of 4) protein_coding-intron (ENSMUSG00000008575.17, intron 2 of 11) -42597 ENSMUSG00000084595.1 ENSMUSG00000084595 ENSMUST00000122646 n-R5s188 rRNA Interval_18734 chr10 89768543 89769906 + 0 NA intron (ENSMUSG00000019951.10, intron 2 of 6) protein_coding-intron (ENSMUSG00000019951.10, intron 1 of 20) 23986 ENSMUSG00000019951.10 ENSMUSG00000019951 ENSMUST00000219819 Uhrf1bp1l protein_coding Interval_129933 chr5 123137748 123139084 + 0 NA promoter-TSS (ENSMUSG00000090086.7) lincRNA-promoter-TSS (ENSMUSG00000090086.7) -515 ENSMUSG00000105881.1 ENSMUSG00000105881 ENSMUST00000195992 4932422M17Rik lincRNA Interval_128901 chr5 115962080 115962665 + 0 NA intron (ENSMUSG00000029516.19, intron 14 of 37) protein_coding-intron (ENSMUSG00000029516.19, intron 23 of 46) -46944 ENSMUSG00000085376.1 ENSMUSG00000085376 ENSMUST00000127049 Gm14508 antisense Interval_95730 chr2 115385477 115385720 + 0 NA Intergenic Intergenic 41213 ENSMUSG00000086197.1 ENSMUSG00000086197 ENSMUST00000154367 Gm13976 lincRNA Interval_71953 chr17 27194624 27195328 + 0 NA TTS (ENSMUSG00000044857.8) protein_coding-TTS (ENSMUSG00000044857.8) -1496 ENSMUSG00000044857.8 ENSMUSG00000044857 ENSMUST00000236055 Lemd2 protein_coding Interval_94220 chr2 85282922 85284174 + 0 NA Intergenic Intergenic -15315 ENSMUSG00000081014.1 ENSMUSG00000081014 ENSMUST00000117313 Gm13714 processed_pseudogene Interval_4476 chr1 74435401 74435799 + 0 NA TTS (ENSMUSG00000026175.12) protein_coding-TTS (ENSMUSG00000026175.12) 11914 ENSMUSG00000026175.12 ENSMUSG00000026175 ENSMUST00000163018 Vil1 protein_coding Interval_50432 chr14 13042361 13043133 + 0 NA Intergenic Intergenic 12377 ENSMUSG00000114421.1 ENSMUSG00000114421 ENSMUST00000224173 Gm48526 lincRNA Interval_134631 chr6 30058611 30058923 + 0 NA intron (ENSMUSG00000058440.14, intron 1 of 2) protein_coding-intron (ENSMUSG00000058440.14, intron 1 of 11) -31128 ENSMUSG00000058440.14 ENSMUSG00000058440 ENSMUST00000132866 Nrf1 protein_coding Interval_164379 chr9 36538388 36538798 + 0 NA TTS (ENSMUSG00000099274.1) processed_pseudogene-TTS (ENSMUSG00000099274.1) 661 ENSMUSG00000099274.1 ENSMUSG00000099274 ENSMUST00000183745 Gm27218 processed_pseudogene Interval_3174 chr1 54445027 54445292 + 0 NA intron (ENSMUSG00000109809.1, intron 4 of 5) protein_coding-intron (ENSMUSG00000109809.1, intron 4 of 5) 11604 ENSMUSG00000109809.1 ENSMUSG00000109809 ENSMUST00000210156 Gm34066 protein_coding Interval_47989 chr13 94882557 94884269 + 0 NA exon (ENSMUSG00000021685.11, exon 3 of 3) protein_coding-exon (ENSMUSG00000021685.11, exon 3 of 3) 813 ENSMUSG00000021685.11 ENSMUSG00000021685 ENSMUST00000184985 Otp protein_coding Interval_128584 chr5 114162101 114162883 + 0 NA intron (ENSMUSG00000042010.16, intron 1 of 52) protein_coding-intron (ENSMUSG00000042010.16, intron 1 of 52) -13414 ENSMUSG00000042010.16 ENSMUSG00000042010 ENSMUST00000142489 Acacb protein_coding Interval_27896 chr11 70699721 70701554 + 0 NA promoter-TSS (ENSMUSG00000020821.17) protein_coding-promoter-TSS (ENSMUSG00000020821.17) 89 ENSMUSG00000020821.17 ENSMUSG00000020821 ENSMUST00000137119 Kif1c protein_coding Interval_102059 chr3 16250323 16250574 + 0 NA Intergenic Intergenic 67212 ENSMUSG00000047213.14 ENSMUSG00000047213 ENSMUST00000108346 Ythdf3 protein_coding Interval_64953 chr16 17488808 17490247 + 0 NA promoter-TSS (ENSMUSG00000022763.18) protein_coding-promoter-TSS (ENSMUSG00000022763.18) -6378 ENSMUSG00000088993.1 ENSMUSG00000088993 ENSMUST00000158368 Gm22770 snRNA Interval_157344 chr8 69716415 69717495 + 0 NA promoter-TSS (ENSMUSG00000054648.8) protein_coding-promoter-TSS (ENSMUSG00000054648.8) -492 ENSMUSG00000054648.8 ENSMUSG00000054648 ENSMUST00000238311 Zfp869 protein_coding Interval_91604 chr2 44518061 44518783 + 0 NA Intergenic Intergenic 89487 ENSMUSG00000088124.1 ENSMUSG00000088124 ENSMUST00000157499 Gm22867 snRNA Interval_172382 chrX 15910082 15910275 + 0 NA Intergenic Intergenic -13409 ENSMUSG00000070240.1 ENSMUSG00000070240 ENSMUST00000093728 Gm23516 snRNA Interval_145773 chr7 38205649 38206329 + 0 NA Intergenic Intergenic 22027 ENSMUSG00000074170.5 ENSMUSG00000074170 ENSMUST00000098513 Plekhf1 protein_coding Interval_125035 chr5 63984552 63985123 + 0 NA Intergenic Intergenic 6034 ENSMUSG00000106076.1 ENSMUSG00000106076 ENSMUST00000199444 Gm43840 processed_pseudogene Interval_162140 chr8 125472319 125472633 + 0 NA intron (ENSMUSG00000001995.9, intron 7 of 22) protein_coding-intron (ENSMUSG00000001995.9, intron 5 of 20) 97332 ENSMUSG00000001995.9 ENSMUSG00000001995 ENSMUST00000212604 Sipa1l2 protein_coding Interval_80554 chr18 44011105 44011354 + 0 NA intron (ENSMUSG00000055561.9, intron 24 of 31) protein_coding-intron (ENSMUSG00000055561.9, intron 24 of 31) -17232 ENSMUSG00000051050.10 ENSMUSG00000051050 ENSMUST00000162265 Spink14 protein_coding Interval_113614 chr4 56997638 56998065 + 0 NA intron (ENSMUSG00000028434.12, intron 25 of 25) protein_coding-intron (ENSMUSG00000028434.12, intron 5 of 5) -7715 ENSMUSG00000045589.7 ENSMUSG00000045589 ENSMUST00000128276 Frrs1l protein_coding Interval_83806 chr19 4793425 4794566 + 0 NA promoter-TSS (ENSMUSG00000094936.8) protein_coding-promoter-TSS (ENSMUSG00000094936.8) -115 ENSMUSG00000094936.8 ENSMUSG00000094936 ENSMUST00000179820 Rbm4 protein_coding Interval_59540 chr15 55145173 55145857 + 0 NA intron (ENSMUSG00000022419.16, intron 1 of 4) protein_coding-intron (ENSMUSG00000022419.16, intron 1 of 8) 12062 ENSMUSG00000022419.16 ENSMUSG00000022419 ENSMUST00000226687 Deptor protein_coding Interval_4479 chr1 74447872 74448165 + 0 NA intron (ENSMUSG00000033364.13, intron 22 of 25) protein_coding-intron (ENSMUSG00000033364.13, intron 20 of 23) 24332 ENSMUSG00000026175.12 ENSMUSG00000026175 ENSMUST00000163018 Vil1 protein_coding Interval_79437 chr18 31888640 31889163 + 0 NA exon (ENSMUSG00000024400.16, exon 16 of 22) protein_coding-exon (ENSMUSG00000024400.16, exon 16 of 22) 22923 ENSMUSG00000044982.7 ENSMUSG00000044982 ENSMUST00000054984 Sft2d3 protein_coding Interval_12491 chr1 194322506 194322734 + 0 NA Intergenic Intergenic -99861 ENSMUSG00000103692.1 ENSMUSG00000103692 ENSMUST00000193395 4930503O07Rik lincRNA Interval_108396 chr3 126606698 126607517 + 0 NA intron (ENSMUSG00000053819.16, intron 2 of 20) protein_coding-intron (ENSMUSG00000053819.16, intron 2 of 18) 7078 ENSMUSG00000106475.1 ENSMUSG00000106475 ENSMUST00000197897 Gm43011 TEC Interval_8097 chr1 135714504 135715542 + 0 NA Intergenic Intergenic -5038 ENSMUSG00000026421.14 ENSMUSG00000026421 ENSMUST00000027677 Csrp1 protein_coding Interval_86662 chr19 42380554 42381196 + 0 NA intron (ENSMUSG00000042401.8, intron 2 of 14) protein_coding-intron (ENSMUSG00000042401.8, intron 2 of 14) -1774 ENSMUSG00000117706.1 ENSMUSG00000117706 ENSMUST00000237236 Gm50184 processed_pseudogene Interval_79020 chr18 23989139 23989889 + 0 NA promoter-TSS (ENSMUSG00000063281.9) protein_coding-promoter-TSS (ENSMUSG00000063281.9) -118 ENSMUSG00000063281.9 ENSMUSG00000063281 ENSMUST00000074941 Zfp35 protein_coding Interval_91249 chr2 36415083 36416659 + 0 NA Intergenic Intergenic -3076 ENSMUSG00000094464.2 ENSMUSG00000094464 ENSMUST00000071437 Olfr339 protein_coding Interval_103371 chr3 40949126 40951128 + 0 NA promoter-TSS (ENSMUSG00000025762.16) protein_coding-promoter-TSS (ENSMUSG00000025762.16) -691 ENSMUSG00000025762.16 ENSMUSG00000025762 ENSMUST00000199797 Larp1b protein_coding Interval_102075 chr3 16488138 16489380 + 0 NA Intergenic Intergenic 305523 ENSMUSG00000047213.14 ENSMUSG00000047213 ENSMUST00000108346 Ythdf3 protein_coding Interval_826 chr1 12034076 12034430 + 0 NA Intergenic Intergenic -86707 ENSMUSG00000101610.1 ENSMUSG00000101610 ENSMUST00000187748 Gm7560 processed_pseudogene Interval_35808 chr12 30115278 30116699 + 0 NA TTS (ENSMUSG00000020673.14) protein_coding-TTS (ENSMUSG00000020673.14) 15911 ENSMUSG00000020673.14 ENSMUSG00000020673 ENSMUST00000155263 Tpo protein_coding Interval_123967 chr5 36910912 36912029 + 0 NA intron (ENSMUSG00000029120.10, intron 1 of 3) protein_coding-intron (ENSMUSG00000029120.10, intron 1 of 8) 1356 ENSMUSG00000106934.1 ENSMUSG00000106934 ENSMUST00000202009 Gm42506 TEC Interval_96550 chr2 125601667 125601938 + 0 NA intron (ENSMUSG00000068394.4, intron 11 of 27) protein_coding-intron (ENSMUSG00000068394.4, intron 11 of 27) 23311 ENSMUSG00000068394.4 ENSMUSG00000068394 ENSMUST00000089776 Cep152 protein_coding Interval_74137 chr17 46725188 46725815 + 0 NA TTS (ENSMUSG00000002763.16) protein_coding-TTS (ENSMUSG00000002763.16) 1201 ENSMUSG00000002769.9 ENSMUSG00000002769 ENSMUST00000233086 Gnmt protein_coding Interval_81367 chr18 59495627 59496189 + 0 NA intron (ENSMUSG00000058152.8, intron 4 of 8) protein_coding-intron (ENSMUSG00000058152.8, intron 4 of 8) -83722 ENSMUSG00000098287.1 ENSMUSG00000098287 ENSMUST00000183687 Mir6355 miRNA Interval_154448 chr8 17782798 17783314 + 0 NA Intergenic Intergenic -247775 ENSMUSG00000060924.15 ENSMUSG00000060924 ENSMUST00000122983 Csmd1 protein_coding Interval_1581 chr1 27900242 27900672 + 0 NA TTS (ENSMUSG00000101033.1) processed_pseudogene-TTS (ENSMUSG00000101033.1) 615 ENSMUSG00000101033.1 ENSMUSG00000101033 ENSMUST00000188833 Gm18776 processed_pseudogene Interval_89439 chr2 20681871 20683543 + 0 NA intron (ENSMUSG00000036617.17, intron 5 of 5) protein_coding-intron (ENSMUSG00000036617.17, intron 4 of 18) 30527 ENSMUSG00000086418.1 ENSMUSG00000086418 ENSMUST00000137186 Gm13362 antisense Interval_164010 chr9 30849393 30849595 + 0 NA Intergenic Intergenic 60163 ENSMUSG00000033453.8 ENSMUSG00000033453 ENSMUST00000216215 Adamts15 protein_coding Interval_115723 chr4 103042939 103043238 + 0 NA intron (ENSMUSG00000035126.19, intron 7 of 7) protein_coding-intron (ENSMUSG00000035126.19, intron 15 of 15) -1471 ENSMUSG00000035126.19 ENSMUSG00000035126 ENSMUST00000148673 Wdr78 protein_coding Interval_109883 chr3 149387276 149388183 + 0 NA intron (ENSMUSG00000106515.4, intron 1 of 3) lincRNA-intron (ENSMUSG00000106515.4, intron 1 of 3) -46721 ENSMUSG00000089269.1 ENSMUSG00000089269 ENSMUST00000158644 Gm26468 snRNA Interval_146391 chr7 45654380 45656065 + 0 NA intron (ENSMUSG00000055978.5, intron 1 of 1) protein_coding-intron (ENSMUSG00000055978.5, intron 1 of 1) 11086 ENSMUSG00000055978.5 ENSMUSG00000055978 ENSMUST00000210470 Fut2 protein_coding Interval_66283 chr16 32849473 32849909 + 0 NA exon (ENSMUSG00000035629.19, exon 3 of 19) protein_coding-exon (ENSMUSG00000035629.19, exon 3 of 19) -13120 ENSMUSG00000035629.19 ENSMUSG00000035629 ENSMUST00000149621 Rubcn protein_coding Interval_134093 chr6 19585613 19585855 + 0 NA Intergenic Intergenic 30392 ENSMUSG00000099149.1 ENSMUSG00000099149 ENSMUST00000183510 Mir6370 miRNA Interval_125250 chr5 65673795 65674121 + 0 NA exon (ENSMUSG00000107158.1, exon 1 of 1) TEC-exon (ENSMUSG00000107158.1, exon 1 of 1) 202 ENSMUSG00000107158.1 ENSMUSG00000107158 ENSMUST00000202644 Gm42728 TEC Interval_148685 chr7 84127671 84129062 + 0 NA intron (ENSMUSG00000038459.10, intron 1 of 2) protein_coding-intron (ENSMUSG00000038459.10, intron 1 of 2) 23304 ENSMUSG00000038459.10 ENSMUSG00000038459 ENSMUST00000208271 Abhd17c protein_coding Interval_106433 chr3 96178662 96179686 + 0 NA Intergenic Intergenic 2813 ENSMUSG00000084686.1 ENSMUSG00000084686 ENSMUST00000122737 Gm22027 snoRNA Interval_80772 chr18 46958400 46959417 + 0 NA promoter-TSS (ENSMUSG00000042705.9) protein_coding-promoter-TSS (ENSMUSG00000042705.9) 47 ENSMUSG00000042705.9 ENSMUSG00000042705 ENSMUST00000234664 Commd10 protein_coding Interval_142652 chr6 144720853 144721738 + 0 NA intron (ENSMUSG00000086282.1, intron 1 of 2) protein_coding-intron (ENSMUSG00000041540.16, intron 1 of 13) 384 ENSMUSG00000086282.1 ENSMUSG00000086282 ENSMUST00000155562 Sox5os4 antisense Interval_26282 chr11 55684054 55684255 + 0 NA Intergenic Intergenic -76421 ENSMUSG00000000263.15 ENSMUSG00000000263 ENSMUST00000102716 Glra1 protein_coding Interval_73708 chr17 42906187 42906828 + 0 NA Intergenic Intergenic -75477 ENSMUSG00000061665.7 ENSMUSG00000061665 ENSMUST00000233626 Cd2ap protein_coding Interval_82528 chr18 74964513 74964709 + 0 NA Intergenic Intergenic -3349 ENSMUSG00000053846.5 ENSMUSG00000053846 ENSMUST00000235783 Lipg protein_coding Interval_174010 chrX 129585028 129585295 + 0 NA Intergenic Intergenic 21295 ENSMUSG00000081874.1 ENSMUSG00000081874 ENSMUST00000121551 Gm14983 processed_pseudogene Interval_32493 chr11 107891315 107891526 + 0 NA intron (ENSMUSG00000040373.12, intron 1 of 5) protein_coding-intron (ENSMUSG00000040373.12, intron 1 of 5) 19942 ENSMUSG00000040373.12 ENSMUSG00000040373 ENSMUST00000039071 Cacng5 protein_coding Interval_166853 chr9 63223909 63224165 + 0 NA intron (ENSMUSG00000058444.8, intron 9 of 10) protein_coding-intron (ENSMUSG00000058444.8, intron 17 of 21) -77026 ENSMUSG00000022245.15 ENSMUSG00000022245 ENSMUST00000055281 Skor1 protein_coding Interval_46514 chr13 66752599 66753430 + 0 NA Intergenic Intergenic 3472 ENSMUSG00000114423.1 ENSMUSG00000114423 ENSMUST00000224301 Gm48404 processed_pseudogene Interval_122726 chr5 24907790 24910310 + 0 NA promoter-TSS (ENSMUSG00000028944.14) protein_coding-promoter-TSS (ENSMUSG00000028944.14) -541 ENSMUSG00000028944.14 ENSMUSG00000028944 ENSMUST00000148531 Prkag2 protein_coding Interval_68967 chr16 89796721 89797003 + 0 NA intron (ENSMUSG00000002489.16, intron 10 of 12) protein_coding-intron (ENSMUSG00000002489.16, intron 25 of 27) -1580 ENSMUSG00000002489.16 ENSMUSG00000002489 ENSMUST00000136760 Tiam1 protein_coding Interval_17637 chr10 78399155 78399751 + 0 NA TTS (ENSMUSG00000061032.9) protein_coding-TTS (ENSMUSG00000061032.9) 6133 ENSMUSG00000064317.5 ENSMUSG00000064317 ENSMUST00000072739 Gm10146 processed_pseudogene Interval_65487 chr16 22708917 22709191 + 0 NA Intergenic Intergenic -22860 ENSMUSG00000116603.1 ENSMUSG00000116603 ENSMUST00000232508 Gm8118 processed_pseudogene Interval_19828 chr10 109808390 109808926 + 0 NA intron (ENSMUSG00000020181.18, intron 14 of 40) protein_coding-intron (ENSMUSG00000020181.18, intron 12 of 38) 159879 ENSMUSG00000112260.1 ENSMUSG00000112260 ENSMUST00000219153 3110043J17Rik TEC Interval_19697 chr10 108173188 108173578 + 0 NA intron (ENSMUSG00000019907.10, intron 1 of 24) protein_coding-intron (ENSMUSG00000019907.10, intron 1 of 25) -30951 ENSMUSG00000112401.1 ENSMUSG00000112401 ENSMUST00000219675 Gm47999 processed_pseudogene Interval_55321 chr14 82753277 82753738 + 0 NA Intergenic Intergenic -16884 ENSMUSG00000115051.1 ENSMUSG00000115051 ENSMUST00000227503 Gm49049 processed_pseudogene Interval_43147 chr13 24688508 24689074 + 0 NA exon (ENSMUSG00000036006.20, exon 1 of 2) protein_coding-exon (ENSMUSG00000036006.20, exon 1 of 2) -52441 ENSMUSG00000085861.1 ENSMUSG00000085861 ENSMUST00000136906 Armh2 protein_coding Interval_94485 chr2 91575783 91576667 + 0 NA exon (ENSMUSG00000040549.16, exon 19 of 43) protein_coding-exon (ENSMUSG00000040549.16, exon 19 of 43) -18540 ENSMUSG00000040549.16 ENSMUSG00000040549 ENSMUST00000129118 Ckap5 protein_coding Interval_72378 chr17 29482784 29483524 + 0 NA intron (ENSMUSG00000097125.2, intron 1 of 4) antisense-intron (ENSMUSG00000097125.2, intron 1 of 3) -9883 ENSMUSG00000024014.8 ENSMUSG00000024014 ENSMUST00000234270 Pim1 protein_coding Interval_30355 chr11 93829896 93830190 + 0 NA Intergenic Intergenic 46100 ENSMUSG00000054079.12 ENSMUSG00000054079 ENSMUST00000134807 Utp18 protein_coding Interval_161563 chr8 121234730 121235334 + 0 NA intron (ENSMUSG00000092329.1, intron 1 of 15) protein_coding-intron (ENSMUSG00000092329.1, intron 1 of 15) -31430 ENSMUSG00000097097.2 ENSMUSG00000097097 ENSMUST00000212635 5033426O07Rik lincRNA Interval_141315 chr6 127130122 127131189 + 0 NA intron (ENSMUSG00000000184.12, intron 1 of 1) protein_coding-intron (ENSMUSG00000000184.12, intron 4 of 4) 7689 ENSMUSG00000107379.1 ENSMUSG00000107379 ENSMUST00000201546 Gm43126 antisense Interval_135136 chr6 36496782 36497538 + 0 NA intron (ENSMUSG00000045613.9, intron 2 of 2) protein_coding-intron (ENSMUSG00000045613.9, intron 2 of 2) 75418 ENSMUSG00000070075.1 ENSMUSG00000070075 ENSMUST00000093567 Mir490 miRNA Interval_112590 chr4 43431250 43432932 + 0 NA Intergenic Intergenic -2974 ENSMUSG00000042788.12 ENSMUSG00000042788 ENSMUST00000149676 Fam166b protein_coding Interval_140841 chr6 122287974 122288204 + 0 NA Intergenic Intergenic -5207 ENSMUSG00000030114.8 ENSMUSG00000030114 ENSMUST00000032207 Klrg1 protein_coding Interval_33497 chr11 116891269 116891909 + 0 NA Intergenic Intergenic 37511 ENSMUSG00000020818.16 ENSMUSG00000020818 ENSMUST00000134106 Mfsd11 protein_coding Interval_50577 chr14 15906583 15906936 + 0 NA intron (ENSMUSG00000114794.1, intron 1 of 3) lincRNA-intron (ENSMUSG00000114794.1, intron 1 of 3) -3759 ENSMUSG00000114765.1 ENSMUSG00000114765 ENSMUST00000223665 Gm8514 processed_pseudogene Interval_131873 chr5 140518030 140518524 + 0 NA intron (ENSMUSG00000036599.10, intron 1 of 1) protein_coding-intron (ENSMUSG00000036599.10, intron 1 of 1) 12702 ENSMUSG00000036599.10 ENSMUSG00000036599 ENSMUST00000124142 Chst12 protein_coding Interval_107027 chr3 103042346 103042541 + 0 NA promoter-TSS (ENSMUSG00000068823.10) protein_coding-promoter-TSS (ENSMUSG00000068823.10) 2444 ENSMUSG00000068823.10 ENSMUSG00000068823 ENSMUST00000197844 Csde1 protein_coding Interval_29860 chr11 87385873 87386082 + 0 NA intron (ENSMUSG00000007646.13, intron 6 of 7) protein_coding-intron (ENSMUSG00000007646.13, intron 7 of 8) 18529 ENSMUSG00000007646.13 ENSMUSG00000007646 ENSMUST00000129400 Rad51c protein_coding Interval_173409 chrX 90384893 90385360 + 0 NA Intergenic Intergenic 34246 ENSMUSG00000082479.3 ENSMUSG00000082479 ENSMUST00000120395 Gm4746 processed_pseudogene Interval_172261 chrX 12073569 12073858 + 0 NA intron (ENSMUSG00000040363.15, intron 1 of 13) protein_coding-intron (ENSMUSG00000040363.15, intron 1 of 13) 86633 ENSMUSG00000040363.15 ENSMUSG00000040363 ENSMUST00000209776 Bcor protein_coding Interval_152622 chr7 135453648 135454041 + 0 NA Intergenic Intergenic -32185 ENSMUSG00000109598.1 ENSMUSG00000109598 ENSMUST00000209224 Gm36356 lincRNA Interval_94649 chr2 93013552 93015879 + 0 NA promoter-TSS (ENSMUSG00000075028.12) protein_coding-promoter-TSS (ENSMUSG00000075028.12) -15729 ENSMUSG00000075027.10 ENSMUSG00000075027 ENSMUST00000145926 4631405J19Rik antisense Interval_114588 chr4 82804138 82804532 + 0 NA exon (ENSMUSG00000028403.15, exon 9 of 9) protein_coding-exon (ENSMUSG00000028403.15, exon 9 of 9) 55226 ENSMUSG00000028403.15 ENSMUSG00000028403 ENSMUST00000156055 Zdhhc21 protein_coding Interval_122581 chr5 23919596 23920514 + 0 NA intron (ENSMUSG00000028995.14, intron 1 of 2) protein_coding-intron (ENSMUSG00000028995.14, intron 10 of 10) -43612 ENSMUSG00000118576.1 ENSMUSG00000118576 ENSMUST00000239129 AC117663.1 unprocessed_pseudogene Interval_49475 chr13 112302298 112302648 + 0 NA intron (ENSMUSG00000049985.15, intron 1 of 5) protein_coding-intron (ENSMUSG00000049985.15, intron 1 of 10) 11352 ENSMUSG00000088991.1 ENSMUSG00000088991 ENSMUST00000158366 Gm22768 snRNA Interval_120652 chr4 149909629 149909886 + 0 NA promoter-TSS (ENSMUSG00000039911.13) protein_coding-promoter-TSS (ENSMUSG00000039911.13) 5751 ENSMUSG00000086767.1 ENSMUSG00000086767 ENSMUST00000146532 Gm13070 antisense Interval_101580 chr3 7106891 7107472 + 0 NA Intergenic Intergenic 86029 ENSMUSG00000104274.1 ENSMUSG00000104274 ENSMUST00000193158 Gm8823 processed_pseudogene Interval_116956 chr4 118429377 118429628 + 0 NA promoter-TSS (ENSMUSG00000006390.15) protein_coding-promoter-TSS (ENSMUSG00000006390.15) 1383 ENSMUSG00000006390.15 ENSMUSG00000006390 ENSMUST00000067896 Elovl1 protein_coding Interval_90329 chr2 29802446 29803671 + 0 NA intron (ENSMUSG00000059316.2, intron 1 of 12) protein_coding-intron (ENSMUSG00000059316.2, intron 1 of 12) -3940 ENSMUSG00000059316.2 ENSMUSG00000059316 ENSMUST00000136444 Slc27a4 protein_coding Interval_142110 chr6 137196855 137197101 + 0 NA Intergenic Intergenic -50049 ENSMUSG00000107567.1 ENSMUSG00000107567 ENSMUST00000203679 4930480K02Rik TEC Interval_99282 chr2 158638504 158638917 + 0 NA TTS (ENSMUSG00000093120.1) miRNA-TTS (ENSMUSG00000093120.1) 127 ENSMUSG00000093120.1 ENSMUSG00000093120 ENSMUST00000175379 Mir3474 miRNA Interval_29818 chr11 87024683 87024881 + 0 NA Intergenic Intergenic -27519 ENSMUSG00000088816.1 ENSMUSG00000088816 ENSMUST00000158191 Gm22387 scaRNA Interval_12218 chr1 190917918 190918128 + 0 NA Intergenic Intergenic -18306 ENSMUSG00000089872.10 ENSMUSG00000089872 ENSMUST00000159066 Rps6kc1 protein_coding Interval_172164 chrX 8131876 8132947 + 0 NA promoter-TSS (ENSMUSG00000031166.13) protein_coding-promoter-TSS (ENSMUSG00000031166.13) 434 ENSMUSG00000031166.13 ENSMUSG00000031166 ENSMUST00000130050 Wdr13 protein_coding Interval_81477 chr18 61000842 61001702 + 0 NA intron (ENSMUSG00000052026.8, intron 12 of 13) protein_coding-intron (ENSMUSG00000052026.8, intron 12 of 13) 12934 ENSMUSG00000052026.8 ENSMUSG00000052026 ENSMUST00000236893 Slc6a7 protein_coding Interval_125446 chr5 67222276 67223483 + 0 NA Intergenic Intergenic -37875 ENSMUSG00000037720.16 ENSMUSG00000037720 ENSMUST00000163028 Tmem33 protein_coding Interval_53811 chr14 62132482 62132867 + 0 NA intron (ENSMUSG00000115531.1, intron 2 of 3) lincRNA-intron (ENSMUSG00000115531.1, intron 2 of 3) 38452 ENSMUSG00000115531.1 ENSMUSG00000115531 ENSMUST00000226702 Gm35419 lincRNA Interval_17697 chr10 79594974 79595826 + 0 NA Intergenic Intergenic -15280 ENSMUSG00000020317.14 ENSMUSG00000020317 ENSMUST00000020566 Theg protein_coding Interval_149278 chr7 96902283 96902677 + 0 NA intron (ENSMUSG00000048078.16, intron 31 of 32) protein_coding-intron (ENSMUSG00000048078.16, intron 31 of 32) 17622 ENSMUSG00000087980.1 ENSMUSG00000087980 ENSMUST00000157355 Gm22226 snRNA Interval_113715 chr4 57811908 57813339 + 0 NA intron (ENSMUSG00000038729.24, intron 1 of 1) protein_coding-intron (ENSMUSG00000038729.24, intron 2 of 2) -8427 ENSMUSG00000038729.24 ENSMUSG00000038729 ENSMUST00000102902 Pakap protein_coding Interval_74429 chr17 50331462 50332008 + 0 NA Intergenic Intergenic -7517 ENSMUSG00000117222.1 ENSMUSG00000117222 ENSMUST00000233175 Gm49906 lincRNA Interval_43018 chr13 23170322 23170861 + 0 NA Intergenic Intergenic 11279 ENSMUSG00000061376.2 ENSMUSG00000061376 ENSMUST00000076180 Vmn1r219 protein_coding Interval_136483 chr6 54854598 54855449 + 0 NA intron (ENSMUSG00000058446.14, intron 2 of 3) protein_coding-intron (ENSMUSG00000058446.14, intron 1 of 4) 37753 ENSMUSG00000058446.14 ENSMUSG00000058446 ENSMUST00000127331 Znrf2 protein_coding Interval_28886 chr11 79051047 79051323 + 0 NA intron (ENSMUSG00000018334.18, intron 1 of 10) protein_coding-intron (ENSMUSG00000018334.18, intron 2 of 18) 8651 ENSMUSG00000018334.18 ENSMUSG00000018334 ENSMUST00000129463 Ksr1 protein_coding Interval_111466 chr4 21847427 21848600 + 0 NA promoter-TSS (ENSMUSG00000028248.15) protein_coding-promoter-TSS (ENSMUSG00000028248.15) -35 ENSMUSG00000028248.15 ENSMUSG00000028248 ENSMUST00000133241 Pnisr protein_coding Interval_32115 chr11 105317130 105317329 + 0 NA intron (ENSMUSG00000020695.14, intron 1 of 2) protein_coding-intron (ENSMUSG00000020695.14, intron 1 of 19) -23603 ENSMUSG00000020695.14 ENSMUSG00000020695 ENSMUST00000151135 Mrc2 protein_coding Interval_159303 chr8 93051936 93052692 + 0 NA Intergenic Intergenic -11211 ENSMUSG00000071047.5 ENSMUSG00000071047 ENSMUST00000209753 Ces1a protein_coding Interval_151578 chr7 124066662 124066873 + 0 NA intron (ENSMUSG00000078591.1, intron 1 of 1) protein_coding-intron (ENSMUSG00000078591.1, intron 1 of 1) -79514 ENSMUSG00000077176.1 ENSMUSG00000077176 ENSMUST00000103988 Gm25759 snoRNA Interval_142734 chr6 145210651 145211902 + 0 NA promoter-TSS (ENSMUSG00000043541.16) protein_coding-promoter-TSS (ENSMUSG00000043541.16) 106 ENSMUSG00000040370.13 ENSMUSG00000040370 ENSMUST00000111719 Etfrf1 protein_coding Interval_73620 chr17 41243347 41245025 + 0 NA Intergenic Intergenic -101811 ENSMUSG00000098030.1 ENSMUSG00000098030 ENSMUST00000182716 Gm6771 processed_pseudogene Interval_90310 chr2 29707918 29708989 + 0 NA intron (ENSMUSG00000039844.20, intron 11 of 23) protein_coding-intron (ENSMUSG00000039844.20, intron 10 of 25) 30212 ENSMUSG00000048316.3 ENSMUSG00000048316 ENSMUST00000051212 Gm9823 pseudogene Interval_75896 chr17 72854202 72855530 + 0 NA Intergenic Intergenic 17330 ENSMUSG00000039770.6 ENSMUSG00000039770 ENSMUST00000233662 Ypel5 protein_coding Interval_61671 chr15 83303949 83306294 + 0 NA intron (ENSMUSG00000054277.8, intron 1 of 1) protein_coding-intron (ENSMUSG00000054277.8, intron 14 of 15) 28146 ENSMUSG00000054277.8 ENSMUSG00000054277 ENSMUST00000227511 Arfgap3 protein_coding Interval_100078 chr2 166958470 166958770 + 0 NA intron (ENSMUSG00000039536.16, intron 3 of 11) protein_coding-intron (ENSMUSG00000039536.16, intron 4 of 11) 6096 ENSMUSG00000039536.16 ENSMUSG00000039536 ENSMUST00000130104 Stau1 protein_coding Interval_27871 chr11 70531331 70531923 + 0 NA TTS (ENSMUSG00000109833.1) protein_coding-TTS (ENSMUSG00000109833.1) 1312 ENSMUSG00000109833.1 ENSMUSG00000109833 ENSMUST00000209971 Gm40193 protein_coding Interval_129880 chr5 122893748 122894188 + 0 NA intron (ENSMUSG00000029475.17, intron 1 of 2) protein_coding-intron (ENSMUSG00000029475.17, intron 1 of 11) 14432 ENSMUSG00000105979.1 ENSMUSG00000105979 ENSMUST00000196235 Gm43411 TEC Interval_149289 chr7 96970123 96970558 + 0 NA intron (ENSMUSG00000018995.12, intron 4 of 5) protein_coding-intron (ENSMUSG00000018995.12, intron 4 of 13) -20200 ENSMUSG00000085560.2 ENSMUSG00000085560 ENSMUST00000137923 C230038L03Rik processed_transcript Interval_85816 chr19 32127066 32128010 + 0 NA intron (ENSMUSG00000040451.18, intron 9 of 10) protein_coding-intron (ENSMUSG00000040451.18, intron 8 of 9) 81735 ENSMUSG00000118064.1 ENSMUSG00000118064 ENSMUST00000235377 Gm50210 sense_intronic Interval_84532 chr19 12440462 12441445 + 0 NA Intergenic Intergenic 13048 ENSMUSG00000040065.8 ENSMUSG00000040065 ENSMUST00000168148 Pfpl protein_coding Interval_133164 chr5 150268402 150269026 + 0 NA intron (ENSMUSG00000056602.12, intron 1 of 60) protein_coding-intron (ENSMUSG00000056602.12, intron 1 of 60) 24851 ENSMUSG00000107082.1 ENSMUSG00000107082 ENSMUST00000201709 Gm36378 processed_pseudogene Interval_81302 chr18 57678460 57678865 + 0 NA intron (ENSMUSG00000058925.11, intron 5 of 5) protein_coding-intron (ENSMUSG00000058925.11, intron 6 of 6) -3152 ENSMUSG00000105951.1 ENSMUSG00000105951 ENSMUST00000196794 Gm44491 miRNA Interval_24147 chr11 30730992 30731523 + 0 NA Intergenic Intergenic -19575 ENSMUSG00000087474.1 ENSMUSG00000087474 ENSMUST00000150255 Gm12100 processed_transcript Interval_138054 chr6 84762759 84763075 + 0 NA intron (ENSMUSG00000033769.16, intron 19 of 21) protein_coding-intron (ENSMUSG00000033769.16, intron 19 of 21) -49323 ENSMUSG00000098142.1 ENSMUSG00000098142 ENSMUST00000183053 Gm7507 processed_pseudogene Interval_167466 chr9 69623226 69623566 + 0 NA Intergenic Intergenic -23642 ENSMUSG00000111096.1 ENSMUSG00000111096 ENSMUST00000215589 Gm47203 processed_pseudogene Interval_160916 chr8 115010046 115011181 + 0 NA intron (ENSMUSG00000004637.15, intron 8 of 8) protein_coding-intron (ENSMUSG00000004637.15, intron 8 of 8) 42300 ENSMUSG00000088428.1 ENSMUSG00000088428 ENSMUST00000157803 Gm22556 rRNA Interval_140577 chr6 119763876 119764175 + 0 NA intron (ENSMUSG00000030172.15, intron 2 of 15) protein_coding-intron (ENSMUSG00000030172.15, intron 6 of 18) -128895 ENSMUSG00000080719.1 ENSMUSG00000080719 ENSMUST00000121192 Gm15532 processed_pseudogene Interval_49125 chr13 108288018 108289438 + 0 NA Intergenic Intergenic 22022 ENSMUSG00000114607.1 ENSMUSG00000114607 ENSMUST00000225465 Gm8990 processed_pseudogene Interval_141914 chr6 135319546 135320086 + 0 NA promoter-TSS (ENSMUSG00000107768.1) lincRNA-promoter-TSS (ENSMUSG00000107768.1) -255 ENSMUSG00000107768.1 ENSMUSG00000107768 ENSMUST00000203442 Gm44275 lincRNA Interval_79970 chr18 36362621 36362994 + 0 NA intron (ENSMUSG00000046727.13, intron 2 of 3) protein_coding-intron (ENSMUSG00000046727.13, intron 1 of 2) 20227 ENSMUSG00000046727.13 ENSMUSG00000046727 ENSMUST00000144158 Cystm1 protein_coding Interval_170999 chr9 113621053 113623079 + 0 NA Intergenic Intergenic 19988 ENSMUSG00000111364.1 ENSMUSG00000111364 ENSMUST00000213455 Gm36745 lincRNA Interval_134419 chr6 28511280 28512204 + 0 NA intron (ENSMUSG00000001424.14, intron 1 of 16) protein_coding-intron (ENSMUSG00000001424.14, intron 1 of 23) 31313 ENSMUSG00000001424.14 ENSMUSG00000001424 ENSMUST00000165151 Snd1 protein_coding Interval_158015 chr8 78061177 78062312 + 0 NA Intergenic Intergenic 17734 ENSMUSG00000110382.1 ENSMUSG00000110382 ENSMUST00000209933 Gm29895 lincRNA Interval_45568 chr13 55930570 55931246 + 0 NA intron (ENSMUSG00000114493.2, intron 2 of 5) antisense-intron (ENSMUSG00000114493.2, intron 2 of 5) -94716 ENSMUSG00000021506.7 ENSMUSG00000021506 ENSMUST00000173618 Pitx1 protein_coding Interval_141531 chr6 128901287 128901487 + 0 NA Intergenic Intergenic -10263 ENSMUSG00000090164.8 ENSMUSG00000090164 ENSMUST00000178918 BC035044 protein_coding Interval_73758 chr17 43326131 43327709 + 0 NA Intergenic Intergenic -33531 ENSMUSG00000056492.6 ENSMUSG00000056492 ENSMUST00000225004 Adgrf5 protein_coding Interval_77778 chr18 3441015 3441778 + 0 NA Intergenic Intergenic -5418 ENSMUSG00000117370.1 ENSMUSG00000117370 ENSMUST00000235096 Gm6235 processed_pseudogene Interval_140721 chr6 120858055 120858654 + 0 NA intron (ENSMUSG00000009112.4, intron 2 of 2) protein_coding-intron (ENSMUSG00000009112.4, intron 2 of 6) 22142 ENSMUSG00000009112.4 ENSMUSG00000009112 ENSMUST00000009256 Bcl2l13 protein_coding Interval_572 chr1 7591179 7591935 + 0 NA promoter-TSS (ENSMUSG00000102320.1) processed_pseudogene-promoter-TSS (ENSMUSG00000102320.1) -89 ENSMUSG00000102320.1 ENSMUSG00000102320 ENSMUST00000195081 Gm37791 processed_pseudogene Interval_26036 chr11 53612635 53613530 + 0 NA intron (ENSMUSG00000000869.12, intron 2 of 2) protein_coding-intron (ENSMUSG00000000869.12, intron 3 of 3) 4256 ENSMUSG00000000869.12 ENSMUSG00000000869 ENSMUST00000000889 Il4 protein_coding Interval_67941 chr16 59946416 59947105 + 0 NA intron (ENSMUSG00000055540.15, intron 4 of 8) protein_coding-intron (ENSMUSG00000055540.15, intron 10 of 17) 307551 ENSMUSG00000116894.1 ENSMUSG00000116894 ENSMUST00000232302 4930547E14Rik processed_transcript Interval_123971 chr5 36933196 36934070 + 0 NA intron (ENSMUSG00000029120.10, intron 5 of 8) protein_coding-intron (ENSMUSG00000029120.10, intron 5 of 8) 23519 ENSMUSG00000106934.1 ENSMUSG00000106934 ENSMUST00000202009 Gm42506 TEC Interval_43680 chr13 34921630 34922596 + 0 NA intron (ENSMUSG00000021414.8, intron 1 of 8) protein_coding-intron (ENSMUSG00000021414.8, intron 1 of 8) -2296 ENSMUSG00000021415.13 ENSMUSG00000021415 ENSMUST00000160905 4933417A18Rik protein_coding Interval_14287 chr10 30448322 30448726 + 0 NA Intergenic Intergenic -45418 ENSMUSG00000094452.1 ENSMUSG00000094452 ENSMUST00000179244 Gm22623 snRNA Interval_2195 chr1 36960218 36960429 + 0 NA Intergenic Intergenic -1896 ENSMUSG00000080054.3 ENSMUSG00000080054 ENSMUST00000116168 Rpl12-ps1 processed_pseudogene Interval_91977 chr2 52117267 52117451 + 0 NA intron (ENSMUSG00000036202.16, intron 3 of 5) protein_coding-intron (ENSMUSG00000036202.16, intron 33 of 35) 5226 ENSMUSG00000036202.16 ENSMUSG00000036202 ENSMUST00000152178 Rif1 protein_coding Interval_111658 chr4 25398155 25398381 + 0 NA Intergenic Intergenic -21081 ENSMUSG00000082451.1 ENSMUSG00000082451 ENSMUST00000121579 Gm11894 processed_pseudogene Interval_134110 chr6 20515560 20515929 + 0 NA Intergenic Intergenic 455246 ENSMUSG00000106763.1 ENSMUSG00000106763 ENSMUST00000201133 Gm19102 processed_pseudogene Interval_63166 chr15 99496940 99497910 + 0 NA exon (ENSMUSG00000023011.8, exon 12 of 12) protein_coding-exon (ENSMUSG00000023011.8, exon 12 of 12) -5201 ENSMUSG00000115863.1 ENSMUSG00000115863 ENSMUST00000229161 Gm49485 processed_pseudogene Interval_161531 chr8 121001903 121002347 + 0 NA promoter-TSS (ENSMUSG00000101886.1) lincRNA-promoter-TSS (ENSMUSG00000101886.1) -802 ENSMUSG00000101886.1 ENSMUSG00000101886 ENSMUST00000187913 Gm28324 lincRNA Interval_159108 chr8 90729815 90730353 + 0 NA intron (ENSMUSG00000109870.1, intron 3 of 5) lincRNA-intron (ENSMUSG00000109870.1, intron 3 of 5) 8546 ENSMUSG00000109870.1 ENSMUSG00000109870 ENSMUST00000211705 Gm35850 lincRNA Interval_148479 chr7 81609608 81610579 + 0 NA promoter-TSS (ENSMUSG00000109194.1) antisense-promoter-TSS (ENSMUSG00000109194.1) -16 ENSMUSG00000109194.1 ENSMUSG00000109194 ENSMUST00000207526 Gm44570 antisense Interval_52627 chr14 48120600 48122233 + 0 NA promoter-TSS (ENSMUSG00000021846.9) protein_coding-promoter-TSS (ENSMUSG00000021846.9) 8747 ENSMUSG00000115790.1 ENSMUSG00000115790 ENSMUST00000228011 9530086P17Rik TEC Interval_108621 chr3 129605683 129605941 + 0 NA intron (ENSMUSG00000041220.10, intron 3 of 3) protein_coding-intron (ENSMUSG00000041220.10, intron 3 of 4) 67671 ENSMUSG00000106092.1 ENSMUSG00000106092 ENSMUST00000200283 Gm43072 TEC Interval_30388 chr11 94046863 94048008 + 0 NA intron (ENSMUSG00000020859.16, intron 1 of 15) protein_coding-intron (ENSMUSG00000020859.16, intron 1 of 26) 3865 ENSMUSG00000020859.16 ENSMUSG00000020859 ENSMUST00000153076 Spag9 protein_coding Interval_137394 chr6 71886227 71887116 + 0 NA TTS (ENSMUSG00000063884.6) protein_coding-TTS (ENSMUSG00000063884.6) -3978 ENSMUSG00000080465.1 ENSMUSG00000080465 ENSMUST00000116815 Gm22486 snoRNA Interval_91496 chr2 39405379 39405664 + 0 NA Intergenic Intergenic 10108 ENSMUSG00000083401.1 ENSMUSG00000083401 ENSMUST00000120391 Gm13506 unprocessed_pseudogene Interval_142719 chr6 145141355 145142128 + 0 NA TTS (ENSMUSG00000107420.1) TEC-TTS (ENSMUSG00000107420.1) 3656 ENSMUSG00000107420.1 ENSMUSG00000107420 ENSMUST00000204561 Gm43910 TEC Interval_10181 chr1 166581533 166581739 + 0 NA Intergenic Intergenic -38726 ENSMUSG00000096172.1 ENSMUSG00000096172 ENSMUST00000179496 Gm22992 miRNA Interval_113453 chr4 55080527 55081038 + 0 NA exon (ENSMUSG00000060206.11, exon 11 of 11) protein_coding-exon (ENSMUSG00000060206.11, exon 11 of 11) -35781 ENSMUSG00000082704.1 ENSMUSG00000082704 ENSMUST00000120116 Gm12515 processed_pseudogene Interval_52758 chr14 49427532 49428036 + 0 NA intron (ENSMUSG00000021852.14, intron 1 of 2) protein_coding-intron (ENSMUSG00000021852.14, intron 1 of 7) 92385 ENSMUSG00000089416.1 ENSMUSG00000089416 ENSMUST00000158791 Gm22116 snRNA Interval_166091 chr9 56547041 56548029 + 0 NA Intergenic Intergenic 3779 ENSMUSG00000111201.1 ENSMUSG00000111201 ENSMUST00000216151 Gm47178 processed_pseudogene Interval_104285 chr3 62742041 62743162 + 0 NA Intergenic Intergenic -18842 ENSMUSG00000103764.1 ENSMUSG00000103764 ENSMUST00000194394 Gm18382 processed_pseudogene Interval_168785 chr9 87028811 87029172 + 0 NA promoter-TSS (ENSMUSG00000032872.16) protein_coding-promoter-TSS (ENSMUSG00000032872.16) 6904 ENSMUSG00000032872.16 ENSMUSG00000032872 ENSMUST00000174294 Cyb5r4 protein_coding Interval_119677 chr4 139165114 139165563 + 0 NA Intergenic Intergenic 15141 ENSMUSG00000083238.1 ENSMUSG00000083238 ENSMUST00000119538 Hspe1-ps4 processed_pseudogene Interval_86902 chr19 44725938 44726819 + 0 NA Intergenic Intergenic -13501 ENSMUSG00000117823.1 ENSMUSG00000117823 ENSMUST00000236025 Gm35610 lincRNA Interval_58886 chr15 39728323 39729552 + 0 NA Intergenic Intergenic -16997 ENSMUSG00000022303.9 ENSMUSG00000022303 ENSMUST00000227792 Dcstamp protein_coding Interval_136528 chr6 55177124 55177981 + 0 NA Intergenic Intergenic -2538 ENSMUSG00000003477.5 ENSMUSG00000003477 ENSMUST00000152720 Inmt protein_coding Interval_68082 chr16 64893934 64894898 + 0 NA Intergenic Intergenic -16857 ENSMUSG00000097999.1 ENSMUSG00000097999 ENSMUST00000182707 Gm9061 processed_pseudogene Interval_37547 chr12 69760815 69761430 + 0 NA intron (ENSMUSG00000020990.5, intron 3 of 9) protein_coding-intron (ENSMUSG00000020990.5, intron 3 of 9) 2822 ENSMUSG00000076065.1 ENSMUSG00000076065 ENSMUST00000102111 Mir681 miRNA Interval_127649 chr5 106205647 106206854 + 0 NA Intergenic Intergenic -9401 ENSMUSG00000105600.1 ENSMUSG00000105600 ENSMUST00000196433 Gm5987 processed_pseudogene Interval_164982 chr9 43609015 43609578 + 0 NA intron (ENSMUSG00000110988.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000110988.1, intron 1 of 2) 1112 ENSMUSG00000110988.1 ENSMUSG00000110988 ENSMUST00000214500 Gm29909 lincRNA Interval_154993 chr8 25544781 25545436 + 0 NA intron (ENSMUSG00000031565.18, intron 2 of 16) protein_coding-intron (ENSMUSG00000031565.18, intron 2 of 17) 8452 ENSMUSG00000086134.1 ENSMUSG00000086134 ENSMUST00000140451 Gm16159 antisense Interval_93319 chr2 71906198 71906652 + 0 NA Intergenic Intergenic 33079 ENSMUSG00000006494.11 ENSMUSG00000006494 ENSMUST00000129427 Pdk1 protein_coding Interval_168789 chr9 87080742 87081161 + 0 NA Intergenic Intergenic -46383 ENSMUSG00000099539.1 ENSMUSG00000099539 ENSMUST00000187559 Gm8282 processed_pseudogene Interval_172670 chrX 41957262 41958219 + 0 NA Intergenic Intergenic 8908 ENSMUSG00000104879.1 ENSMUSG00000104879 ENSMUST00000198566 Gm44490 miRNA Interval_31446 chr11 100724743 100725492 + 0 NA intron (ENSMUSG00000019173.11, intron 1 of 2) protein_coding-intron (ENSMUSG00000019173.11, intron 1 of 5) 5098 ENSMUSG00000019173.11 ENSMUSG00000019173 ENSMUST00000155500 Rab5c protein_coding Interval_82641 chr18 75568163 75568434 + 0 NA intron (ENSMUSG00000052928.9, intron 6 of 11) protein_coding-intron (ENSMUSG00000052928.9, intron 6 of 11) 53653 ENSMUSG00000097712.1 ENSMUSG00000097712 ENSMUST00000181913 Gm10532 antisense Interval_94773 chr2 94213211 94213844 + 0 NA intron (ENSMUSG00000075020.6, intron 3 of 4) lincRNA-intron (ENSMUSG00000075020.6, intron 3 of 5) -27851 ENSMUSG00000106336.1 ENSMUSG00000106336 ENSMUST00000197461 Mir129b miRNA Interval_88701 chr2 9872531 9872925 + 0 NA intron (ENSMUSG00000015619.10, intron 3 of 5) protein_coding-intron (ENSMUSG00000015619.10, intron 3 of 5) 2671 ENSMUSG00000015619.10 ENSMUSG00000015619 ENSMUST00000142305 Gata3 protein_coding Interval_38806 chr12 82489150 82489738 + 0 NA Intergenic Intergenic 7093 ENSMUSG00000094374.2 ENSMUSG00000094374 ENSMUST00000179295 Gm5435 processed_pseudogene Interval_94567 chr2 92307993 92308720 + 0 NA intron (ENSMUSG00000058318.15, intron 6 of 6) protein_coding-intron (ENSMUSG00000058318.15, intron 4 of 15) -3798 ENSMUSG00000081730.1 ENSMUSG00000081730 ENSMUST00000119099 Gm13785 processed_pseudogene Interval_29433 chr11 83987543 83988198 + 0 NA intron (ENSMUSG00000034940.15, intron 7 of 20) protein_coding-intron (ENSMUSG00000034940.15, intron 7 of 21) -31331 ENSMUSG00000034940.15 ENSMUSG00000034940 ENSMUST00000132887 Synrg protein_coding Interval_140388 chr6 117776804 117777244 + 0 NA Intergenic Intergenic -31696 ENSMUSG00000071237.4 ENSMUSG00000071237 ENSMUST00000120444 Gemin6-ps processed_pseudogene Interval_172105 chrX 7610257 7611561 + 0 NA exon (ENSMUSG00000031142.17, exon 6 of 47) protein_coding-exon (ENSMUSG00000031142.17, exon 6 of 47) -5528 ENSMUSG00000103436.1 ENSMUSG00000103436 ENSMUST00000126170 Gm36995 processed_transcript Interval_32511 chr11 108028349 108028934 + 0 NA intron (ENSMUSG00000050965.14, intron 5 of 16) protein_coding-intron (ENSMUSG00000050965.14, intron 5 of 16) -15836 ENSMUSG00000050965.14 ENSMUSG00000050965 ENSMUST00000134725 Prkca protein_coding Interval_106680 chr3 98442408 98442809 + 0 NA intron (ENSMUSG00000050064.14, intron 1 of 4) protein_coding-intron (ENSMUSG00000050064.14, intron 1 of 4) 6368 ENSMUSG00000106107.1 ENSMUSG00000106107 ENSMUST00000187850 Gm43190 sense_intronic Interval_50341 chr14 11930654 11931334 + 0 NA intron (ENSMUSG00000021745.14, intron 2 of 3) protein_coding-intron (ENSMUSG00000021745.14, intron 2 of 29) 26315 ENSMUSG00000114267.1 ENSMUSG00000114267 ENSMUST00000225771 Gm48600 TEC Interval_148128 chr7 79391961 79393382 + 0 NA intron (ENSMUSG00000039187.16, intron 1 of 34) protein_coding-intron (ENSMUSG00000039187.16, intron 1 of 37) -5759 ENSMUSG00000039194.16 ENSMUSG00000039194 ENSMUST00000206695 Rlbp1 protein_coding Interval_7323 chr1 128946078 128946862 + 0 NA Intergenic Intergenic -60451 ENSMUSG00000064737.1 ENSMUSG00000064737 ENSMUST00000082803 Gm23056 snRNA Interval_95881 chr2 117941763 117941970 + 0 NA intron (ENSMUSG00000087203.7, intron 8 of 9) processed_transcript-intron (ENSMUSG00000087203.7, intron 8 of 9) -97977 ENSMUSG00000103266.1 ENSMUSG00000103266 ENSMUST00000193616 Gm36979 TEC Interval_22538 chr11 11598280 11598945 + 0 NA intron (ENSMUSG00000062511.6, intron 2 of 3) protein_coding-intron (ENSMUSG00000062511.6, intron 2 of 3) 29223 ENSMUSG00000062511.6 ENSMUSG00000062511 ENSMUST00000149910 4930512M02Rik protein_coding Interval_75481 chr17 67160544 67160737 + 0 NA intron (ENSMUSG00000033278.10, intron 2 of 19) protein_coding-intron (ENSMUSG00000033278.10, intron 2 of 32) -134405 ENSMUSG00000093508.1 ENSMUSG00000093508 ENSMUST00000176783 Mir5709 miRNA Interval_124374 chr5 45012051 45012591 + 0 NA exon (ENSMUSG00000029092.9, exon 6 of 6) lincRNA-exon (ENSMUSG00000029092.9, exon 6 of 6) -28079 ENSMUSG00000067331.5 ENSMUSG00000067331 ENSMUST00000087431 Gm10205 pseudogene Interval_96226 chr2 120706454 120706783 + 0 NA intron (ENSMUSG00000033705.17, intron 24 of 31) protein_coding-intron (ENSMUSG00000033705.17, intron 3 of 10) 22020 ENSMUSG00000027284.16 ENSMUSG00000027284 ENSMUST00000136725 Cdan1 protein_coding Interval_132644 chr5 146919733 146920903 + 0 NA Intergenic Intergenic -28339 ENSMUSG00000016503.18 ENSMUSG00000016503 ENSMUST00000133296 Gtf3a protein_coding Interval_54416 chr14 69145403 69147097 + 0 NA Intergenic Intergenic -12421 ENSMUSG00000098713.1 ENSMUSG00000098713 ENSMUST00000184266 Rps2-ps5 processed_pseudogene Interval_98870 chr2 155673506 155674112 + 0 NA promoter-TSS (ENSMUSG00000038324.13) protein_coding-promoter-TSS (ENSMUSG00000038324.13) -20785 ENSMUSG00000088695.1 ENSMUSG00000088695 ENSMUST00000158070 Gm22334 snoRNA Interval_73854 chr17 44629571 44629892 + 0 NA intron (ENSMUSG00000039153.17, intron 3 of 4) protein_coding-intron (ENSMUSG00000039153.17, intron 6 of 7) 11412 ENSMUSG00000070209.1 ENSMUSG00000070209 ENSMUST00000093699 n-R5s27 rRNA Interval_45878 chr13 58732665 58733299 + 0 NA Intergenic Intergenic -23569 ENSMUSG00000114325.1 ENSMUSG00000114325 ENSMUST00000225684 Rpl13-ps2 processed_pseudogene Interval_15368 chr10 45132008 45133080 + 0 NA intron (ENSMUSG00000019849.11, intron 10 of 14) protein_coding-intron (ENSMUSG00000019849.11, intron 10 of 14) -36836 ENSMUSG00000077082.1 ENSMUSG00000077082 ENSMUST00000103894 Gm23766 miRNA Interval_48894 chr13 104509477 104510263 + 0 NA Intergenic Intergenic -175061 ENSMUSG00000084860.1 ENSMUSG00000084860 ENSMUST00000131215 2610204G07Rik antisense Interval_65001 chr16 17782360 17783208 + 0 NA intron (ENSMUSG00000022750.18, intron 4 of 6) protein_coding-intron (ENSMUSG00000022750.18, intron 4 of 6) -14531 ENSMUSG00000012017.4 ENSMUSG00000012017 ENSMUST00000231301 Scarf2 protein_coding Interval_40416 chr12 104740010 104741036 + 0 NA intron (ENSMUSG00000041415.10, intron 1 of 26) protein_coding-intron (ENSMUSG00000041415.10, intron 1 of 26) -18471 ENSMUSG00000041415.10 ENSMUSG00000041415 ENSMUST00000222002 Dicer1 protein_coding Interval_122665 chr5 24550667 24551546 + 0 NA intron (ENSMUSG00000038199.12, intron 5 of 17) protein_coding-intron (ENSMUSG00000038199.12, intron 5 of 18) 4304 ENSMUSG00000038199.12 ENSMUSG00000038199 ENSMUST00000198709 Iqca1l protein_coding Interval_29511 chr11 84562787 84564003 + 0 NA Intergenic Intergenic 37735 ENSMUSG00000087211.7 ENSMUSG00000087211 ENSMUST00000128121 Lhx1os lincRNA Interval_166425 chr9 59385872 59386206 + 0 NA Intergenic Intergenic -58526 ENSMUSG00000025235.8 ENSMUSG00000025235 ENSMUST00000214225 Bbs4 protein_coding Interval_15042 chr10 42170062 42172261 + 0 NA Intergenic Intergenic 87205 ENSMUSG00000048756.11 ENSMUSG00000048756 ENSMUST00000105501 Foxo3 protein_coding Interval_16103 chr10 60752361 60753420 + 0 NA promoter-TSS (ENSMUSG00000020100.15) protein_coding-promoter-TSS (ENSMUSG00000020100.15) -107 ENSMUSG00000020100.15 ENSMUSG00000020100 ENSMUST00000144989 Slc29a3 protein_coding Interval_42380 chr13 12478123 12479111 + 0 NA intron (ENSMUSG00000095105.2, intron 5 of 5) protein_coding-intron (ENSMUSG00000095105.2, intron 5 of 5) -22094 ENSMUSG00000057554.13 ENSMUSG00000057554 ENSMUST00000152478 Lgals8 protein_coding Interval_66532 chr16 34920051 34920917 + 0 NA intron (ENSMUSG00000022836.11, intron 4 of 17) protein_coding-intron (ENSMUSG00000022836.11, intron 14 of 31) 15345 ENSMUSG00000022836.11 ENSMUSG00000022836 ENSMUST00000231589 Mylk protein_coding Interval_144563 chr7 25917200 25917724 + 0 NA TTS (ENSMUSG00000030483.14) protein_coding-TTS (ENSMUSG00000030483.14) 696 ENSMUSG00000030483.14 ENSMUSG00000030483 ENSMUST00000144140 Cyp2b10 protein_coding Interval_1410 chr1 21411111 21412303 + 0 NA intron (ENSMUSG00000028033.16, intron 9 of 11) protein_coding-intron (ENSMUSG00000028033.16, intron 11 of 13) 20801 ENSMUSG00000085679.2 ENSMUSG00000085679 ENSMUST00000126985 Gm16328 processed_pseudogene Interval_33924 chr11 119435843 119436380 + 0 NA exon (ENSMUSG00000070327.14, exon 25 of 67) protein_coding-exon (ENSMUSG00000070327.14, exon 25 of 67) -41946 ENSMUSG00000070327.14 ENSMUSG00000070327 ENSMUST00000172235 Rnf213 protein_coding Interval_57725 chr15 16908920 16910345 + 0 NA Intergenic Intergenic -58668 ENSMUSG00000115460.1 ENSMUSG00000115460 ENSMUST00000227900 Gm49127 antisense Interval_99950 chr2 166053729 166054537 + 0 NA intron (ENSMUSG00000027678.17, intron 10 of 22) protein_coding-intron (ENSMUSG00000027678.17, intron 10 of 22) 6215 ENSMUSG00000027678.17 ENSMUSG00000027678 ENSMUST00000139394 Ncoa3 protein_coding Interval_41809 chr12 119777163 119778222 + 0 NA Intergenic Intergenic 98950 ENSMUSG00000114137.1 ENSMUSG00000114137 ENSMUST00000222158 Gm48685 unprocessed_pseudogene Interval_30695 chr11 95945592 95946631 + 0 NA Intergenic Intergenic 17272 ENSMUSG00000093358.1 ENSMUSG00000093358 ENSMUST00000175617 Mir3063 miRNA Interval_103904 chr3 54765677 54766346 + 0 NA intron (ENSMUSG00000027796.2, intron 1 of 5) protein_coding-intron (ENSMUSG00000027796.2, intron 1 of 5) 10429 ENSMUSG00000027796.2 ENSMUSG00000027796 ENSMUST00000029371 Smad9 protein_coding Interval_33964 chr11 119695817 119696548 + 0 NA intron (ENSMUSG00000025583.15, intron 3 of 32) protein_coding-intron (ENSMUSG00000025583.15, intron 3 of 33) -49552 ENSMUSG00000083870.1 ENSMUSG00000083870 ENSMUST00000121392 Gm11761 processed_pseudogene Interval_136746 chr6 58934151 58934422 + 0 NA exon (ENSMUSG00000037709.13, exon 18 of 18) protein_coding-exon (ENSMUSG00000037709.13, exon 18 of 18) -27613 ENSMUSG00000055430.4 ENSMUSG00000055430 ENSMUST00000205101 Nap1l5 protein_coding Interval_124673 chr5 53110180 53110554 + 0 NA intron (ENSMUSG00000029189.10, intron 23 of 23) protein_coding-intron (ENSMUSG00000029189.10, intron 23 of 23) -32793 ENSMUSG00000077316.1 ENSMUSG00000077316 ENSMUST00000104128 n-R5s171 rRNA Interval_46008 chr13 60039563 60039780 + 0 NA intron (ENSMUSG00000114531.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000114531.1, intron 1 of 2) 17954 ENSMUSG00000114795.1 ENSMUSG00000114795 ENSMUST00000223983 Gm48396 lincRNA Interval_148520 chr7 82070146 82070477 + 0 NA promoter-TSS (ENSMUSG00000109145.1) lincRNA-promoter-TSS (ENSMUSG00000109145.1) -76 ENSMUSG00000109145.1 ENSMUSG00000109145 ENSMUST00000208972 Gm20744 lincRNA Interval_81678 chr18 63286601 63286828 + 0 NA intron (ENSMUSG00000041482.17, intron 2 of 50) protein_coding-intron (ENSMUSG00000041482.17, intron 1 of 7) 21624 ENSMUSG00000118336.1 ENSMUSG00000118336 ENSMUST00000235825 Gm50172 TEC Interval_167729 chr9 72326023 72326442 + 0 NA intron (ENSMUSG00000038535.17, intron 13 of 19) protein_coding-intron (ENSMUSG00000038535.17, intron 13 of 21) 11101 ENSMUSG00000102225.1 ENSMUSG00000102225 ENSMUST00000193207 Gm37983 TEC Interval_72000 chr17 27518979 27519300 + 0 NA intron (ENSMUSG00000063239.17, intron 1 of 8) protein_coding-intron (ENSMUSG00000063239.17, intron 1 of 8) -3434 ENSMUSG00000082177.2 ENSMUSG00000082177 ENSMUST00000120515 Gm16005 processed_pseudogene Interval_161122 chr8 117612219 117613219 + 0 NA intron (ENSMUSG00000034330.10, intron 27 of 32) protein_coding-intron (ENSMUSG00000034330.10, intron 27 of 32) 60970 ENSMUSG00000034308.13 ENSMUSG00000034308 ENSMUST00000174450 Sdr42e1 protein_coding Interval_111219 chr4 14965925 14966149 + 0 NA intron (ENSMUSG00000040536.15, intron 10 of 13) protein_coding-intron (ENSMUSG00000040536.15, intron 9 of 12) 35361 ENSMUSG00000086587.7 ENSMUSG00000086587 ENSMUST00000152024 Gm11837 antisense Interval_74432 chr17 50415818 50416786 + 0 NA Intergenic Intergenic 77050 ENSMUSG00000117222.1 ENSMUSG00000117222 ENSMUST00000233175 Gm49906 lincRNA Interval_108148 chr3 121967484 121968363 + 0 NA promoter-TSS (ENSMUSG00000039831.16) protein_coding-promoter-TSS (ENSMUSG00000039831.16) -35066 ENSMUSG00000039831.16 ENSMUSG00000039831 ENSMUST00000199550 Arhgap29 protein_coding Interval_104301 chr3 63081119 63082605 + 0 NA Intergenic Intergenic -70355 ENSMUSG00000089175.1 ENSMUSG00000089175 ENSMUST00000158550 Gm22433 scaRNA Interval_100339 chr2 168494008 168494196 + 0 NA intron (ENSMUSG00000027544.16, intron 7 of 8) protein_coding-intron (ENSMUSG00000027544.16, intron 9 of 9) -75528 ENSMUSG00000082239.1 ENSMUSG00000082239 ENSMUST00000119539 Gm14234 processed_pseudogene Interval_84288 chr19 9865851 9866209 + 0 NA exon (ENSMUSG00000118138.1, exon 1 of 1) lincRNA-exon (ENSMUSG00000118138.1, exon 1 of 1) 2965 ENSMUSG00000118138.1 ENSMUSG00000118138 ENSMUST00000235839 Gm50322 lincRNA Interval_173610 chrX 100818567 100819150 + 0 NA TTS (ENSMUSG00000000881.12) protein_coding-TTS (ENSMUSG00000000881.12) 41573 ENSMUSG00000000881.12 ENSMUSG00000000881 ENSMUST00000146772 Dlg3 protein_coding Interval_155161 chr8 27137051 27137898 + 0 NA Intergenic Intergenic -5436 ENSMUSG00000097262.2 ENSMUSG00000097262 ENSMUST00000181424 4933416M07Rik antisense Interval_82679 chr18 75878922 75879267 + 0 NA intron (ENSMUSG00000044646.15, intron 1 of 5) protein_coding-intron (ENSMUSG00000044646.15, intron 1 of 4) 58879 ENSMUSG00000044646.15 ENSMUSG00000044646 ENSMUST00000167921 Zbtb7c protein_coding Interval_66116 chr16 31737310 31737886 + 0 NA intron (ENSMUSG00000022770.17, intron 1 of 2) protein_coding-intron (ENSMUSG00000022770.17, intron 4 of 24) 9744 ENSMUSG00000089011.1 ENSMUSG00000089011 ENSMUST00000158386 Gm24879 snoRNA Interval_72674 chr17 31487618 31488229 + 0 NA promoter-TSS (ENSMUSG00000118390.1) TEC-promoter-TSS (ENSMUSG00000118390.1) -554 ENSMUSG00000118390.1 ENSMUSG00000118390 ENSMUST00000237599 Gm50102 TEC Interval_89035 chr2 14857689 14858484 + 0 NA intron (ENSMUSG00000057914.15, intron 1 of 7) protein_coding-intron (ENSMUSG00000057914.15, intron 2 of 13) -16335 ENSMUSG00000057914.15 ENSMUSG00000057914 ENSMUST00000144423 Cacnb2 protein_coding Interval_119806 chr4 140102825 140104112 + 0 NA intron (ENSMUSG00000040972.8, intron 3 of 9) protein_coding-intron (ENSMUSG00000040972.8, intron 3 of 9) -28409 ENSMUSG00000085968.1 ENSMUSG00000085968 ENSMUST00000135858 Gm13027 antisense Interval_99956 chr2 166096752 166097919 + 0 NA intron (ENSMUSG00000006800.14, intron 4 of 21) protein_coding-intron (ENSMUSG00000006800.14, intron 3 of 20) 49417 ENSMUSG00000027678.17 ENSMUSG00000027678 ENSMUST00000139394 Ncoa3 protein_coding Interval_15216 chr10 43420514 43421267 + 0 NA intron (ENSMUSG00000038240.13, intron 7 of 7) protein_coding-intron (ENSMUSG00000038240.13, intron 7 of 7) 8359 ENSMUSG00000110772.1 ENSMUSG00000110772 ENSMUST00000216518 Gm47856 TEC Interval_103319 chr3 38671385 38671728 + 0 NA Intergenic Intergenic 57309 ENSMUSG00000106168.1 ENSMUSG00000106168 ENSMUST00000200416 Gm43538 lincRNA Interval_7979 chr1 135014261 135014529 + 0 NA intron (ENSMUSG00000042793.13, intron 2 of 4) protein_coding-intron (ENSMUSG00000042793.13, intron 6 of 17) 7696 ENSMUSG00000042793.13 ENSMUSG00000042793 ENSMUST00000139369 Lgr6 protein_coding Interval_81894 chr18 65661042 65661853 + 0 NA intron (ENSMUSG00000042439.13, intron 4 of 6) protein_coding-intron (ENSMUSG00000042439.13, intron 3 of 5) 26654 ENSMUSG00000117775.1 ENSMUSG00000117775 ENSMUST00000237947 Gm50462 sense_intronic Interval_138782 chr6 91821300 91821547 + 0 NA intron (ENSMUSG00000030098.15, intron 1 of 23) protein_coding-intron (ENSMUSG00000030098.15, intron 1 of 23) -25163 ENSMUSG00000030098.15 ENSMUSG00000030098 ENSMUST00000205964 Grip2 protein_coding Interval_139486 chr6 100490950 100491397 + 0 NA Intergenic Intergenic 3641 ENSMUSG00000087929.1 ENSMUSG00000087929 ENSMUST00000157304 Gm23234 snoRNA Interval_91285 chr2 37416739 37417441 + 0 NA promoter-TSS (ENSMUSG00000075376.10) protein_coding-promoter-TSS (ENSMUSG00000075376.10) -16933 ENSMUSG00000077756.1 ENSMUSG00000077756 ENSMUST00000104568 Snord90 snoRNA Interval_95362 chr2 106944120 106945117 + 0 NA Intergenic Intergenic -17449 ENSMUSG00000084164.1 ENSMUSG00000084164 ENSMUST00000120168 Gm13902 processed_pseudogene Interval_125834 chr5 74827590 74827813 + 0 NA Intergenic Intergenic -55634 ENSMUSG00000106806.1 ENSMUSG00000106806 ENSMUST00000202480 Gm17906 processed_pseudogene Interval_35160 chr12 17681140 17681446 + 0 NA Intergenic Intergenic -36088 ENSMUSG00000088939.1 ENSMUSG00000088939 ENSMUST00000158314 Gm25925 misc_RNA Interval_109893 chr3 149834356 149834917 + 0 NA Intergenic Intergenic -174240 ENSMUSG00000104785.1 ENSMUSG00000104785 ENSMUST00000197948 Gm31121 lincRNA Interval_138800 chr6 92004345 92005720 + 0 NA intron (ENSMUSG00000034037.14, intron 1 of 19) protein_coding-intron (ENSMUSG00000034037.14, intron 2 of 20) -2518 ENSMUSG00000107794.1 ENSMUSG00000107794 ENSMUST00000204631 Gm44095 TEC Interval_47829 chr13 93601684 93602469 + 0 NA Intergenic Intergenic -23306 ENSMUSG00000085834.1 ENSMUSG00000085834 ENSMUST00000143025 Gm15622 antisense Interval_752 chr1 10650523 10651481 + 0 NA intron (ENSMUSG00000042501.12, intron 1 of 9) protein_coding-intron (ENSMUSG00000042501.12, intron 1 of 10) -44121 ENSMUSG00000081417.1 ENSMUSG00000081417 ENSMUST00000119252 Gm15603 processed_pseudogene Interval_140703 chr6 120675614 120677054 + 0 NA intron (ENSMUSG00000071226.11, intron 1 of 1) protein_coding-intron (ENSMUSG00000071226.11, intron 1 of 18) -59422 ENSMUSG00000071226.11 ENSMUSG00000071226 ENSMUST00000143563 Cecr2 protein_coding Interval_35397 chr12 21315905 21316791 + 0 NA promoter-TSS (ENSMUSG00000062054.7) protein_coding-promoter-TSS (ENSMUSG00000062054.7) -66 ENSMUSG00000062054.7 ENSMUSG00000062054 ENSMUST00000222344 Iah1 protein_coding Interval_22990 chr11 18528619 18529133 + 0 NA Intergenic Intergenic -18936 ENSMUSG00000082852.2 ENSMUSG00000082852 ENSMUST00000121061 Gm12021 processed_pseudogene Interval_173763 chrX 103616989 103617308 + 0 NA promoter-TSS (ENSMUSG00000086370.9) lincRNA-promoter-TSS (ENSMUSG00000086370.9) 5221 ENSMUSG00000086370.9 ENSMUSG00000086370 ENSMUST00000123841 Ftx lincRNA Interval_44698 chr13 47254736 47255075 + 0 NA Intergenic Intergenic 61080 ENSMUSG00000038068.15 ENSMUSG00000038068 ENSMUST00000110111 Rnf144b protein_coding Interval_88441 chr2 5080171 5080644 + 0 NA Intergenic Intergenic 43127 ENSMUSG00000086430.1 ENSMUSG00000086430 ENSMUST00000145585 4930551O13Rik antisense Interval_76984 chr17 85387691 85388346 + 0 NA intron (ENSMUSG00000071037.6, intron 3 of 10) protein_coding-intron (ENSMUSG00000071037.6, intron 3 of 10) -110615 ENSMUSG00000097803.1 ENSMUSG00000097803 ENSMUST00000181130 Rpl31-ps16 processed_pseudogene Interval_55097 chr14 78037893 78038956 + 0 NA intron (ENSMUSG00000115517.1, intron 2 of 2) lincRNA-intron (ENSMUSG00000115517.1, intron 2 of 2) 18696 ENSMUSG00000115517.1 ENSMUSG00000115517 ENSMUST00000226503 Gm48954 lincRNA Interval_83520 chr18 88771565 88771801 + 0 NA intron (ENSMUSG00000056153.15, intron 3 of 7) protein_coding-intron (ENSMUSG00000056153.15, intron 3 of 7) -55367 ENSMUSG00000117887.1 ENSMUSG00000117887 ENSMUST00000236521 Gm50404 processed_pseudogene Interval_119867 chr4 140591490 140592917 + 0 NA promoter-TSS (ENSMUSG00000040964.16) protein_coding-promoter-TSS (ENSMUSG00000040964.16) 24862 ENSMUSG00000040964.16 ENSMUSG00000040964 ENSMUST00000154979 Arhgef10l protein_coding Interval_125479 chr5 67454268 67454974 + 0 NA TTS (ENSMUSG00000106925.1) processed_pseudogene-TTS (ENSMUSG00000106925.1) 1142 ENSMUSG00000106925.1 ENSMUSG00000106925 ENSMUST00000202231 Gm20072 processed_pseudogene Interval_104822 chr3 75505623 75505837 + 0 NA Intergenic Intergenic -23574 ENSMUSG00000104301.3 ENSMUSG00000104301 ENSMUST00000204982 Wdr49 protein_coding Interval_147520 chr7 67997646 67997943 + 0 NA intron (ENSMUSG00000005533.10, intron 1 of 20) protein_coding-intron (ENSMUSG00000005533.10, intron 1 of 20) -111209 ENSMUSG00000109152.1 ENSMUSG00000109152 ENSMUST00000208544 Gm44666 processed_pseudogene Interval_5308 chr1 87424166 87424424 + 0 NA intron (ENSMUSG00000048000.15, intron 17 of 26) protein_coding-intron (ENSMUSG00000048000.15, intron 19 of 28) -8946 ENSMUSG00000089613.1 ENSMUSG00000089613 ENSMUST00000158988 Gm23504 snRNA Interval_56565 chr14 120368131 120369487 + 0 NA intron (ENSMUSG00000022139.17, intron 2 of 2) protein_coding-intron (ENSMUSG00000022139.17, intron 2 of 8) -10432 ENSMUSG00000022139.17 ENSMUSG00000022139 ENSMUST00000227153 Mbnl2 protein_coding Interval_31811 chr11 103074311 103075200 + 0 NA intron (ENSMUSG00000020937.14, intron 5 of 10) protein_coding-intron (ENSMUSG00000020937.14, intron 9 of 14) 26863 ENSMUSG00000020937.14 ENSMUSG00000020937 ENSMUST00000142970 Plcd3 protein_coding Interval_171149 chr9 114778846 114779538 + 0 NA promoter-TSS (ENSMUSG00000052724.7) antisense-promoter-TSS (ENSMUSG00000052724.7) -908 ENSMUSG00000052724.7 ENSMUSG00000052724 ENSMUST00000150678 Gm9888 antisense Interval_94545 chr2 92077019 92077635 + 0 NA intron (ENSMUSG00000087197.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000087197.1, intron 1 of 1) -17958 ENSMUSG00000087018.1 ENSMUSG00000087018 ENSMUST00000123840 2900072N19Rik lincRNA Interval_148994 chr7 90982288 90982520 + 0 NA intron (ENSMUSG00000052572.19, intron 6 of 27) protein_coding-intron (ENSMUSG00000052572.19, intron 6 of 27) -12905 ENSMUSG00000109562.1 ENSMUSG00000109562 ENSMUST00000207744 Gm45178 TEC Interval_123135 chr5 30023411 30023682 + 0 NA Intergenic Intergenic 10225 ENSMUSG00000025746.11 ENSMUSG00000025746 ENSMUST00000199765 Il6 protein_coding Interval_33800 chr11 118609204 118610983 + 0 NA intron (ENSMUSG00000025576.17, intron 3 of 13) protein_coding-intron (ENSMUSG00000025576.17, intron 4 of 14) -102740 ENSMUSG00000025576.17 ENSMUSG00000025576 ENSMUST00000134774 Rbfox3 protein_coding Interval_130126 chr5 124432190 124433221 + 0 NA Intergenic Intergenic 6999 ENSMUSG00000103864.1 ENSMUSG00000103864 ENSMUST00000192373 Gm37415 TEC Interval_47657 chr13 90886164 90887742 + 0 NA intron (ENSMUSG00000078958.9, intron 4 of 5) protein_coding-intron (ENSMUSG00000078958.9, intron 5 of 6) 12860 ENSMUSG00000078958.9 ENSMUSG00000078958 ENSMUST00000182932 Atp6ap1l protein_coding Interval_11749 chr1 185187161 185187842 + 0 NA Intergenic Intergenic -55406 ENSMUSG00000077571.1 ENSMUSG00000077571 ENSMUST00000104383 Snora36b snoRNA Interval_20872 chr10 121640151 121642538 + 0 NA promoter-TSS (ENSMUSG00000047642.15) protein_coding-promoter-TSS (ENSMUSG00000047642.15) -244 ENSMUSG00000047642.15 ENSMUSG00000047642 ENSMUST00000132744 D930020B18Rik protein_coding Interval_77583 chr17 92399481 92399769 + 0 NA Intergenic Intergenic -26509 ENSMUSG00000117624.1 ENSMUSG00000117624 ENSMUST00000234379 Gm6751 processed_pseudogene Interval_75130 chr17 63800985 63801858 + 0 NA Intergenic Intergenic -61641 ENSMUSG00000000127.15 ENSMUSG00000000127 ENSMUST00000038080 Fer protein_coding Interval_125098 chr5 64438141 64439421 + 0 NA intron (ENSMUSG00000105105.1, intron 1 of 3) lincRNA-intron (ENSMUSG00000105105.1, intron 1 of 3) 4826 ENSMUSG00000105105.1 ENSMUSG00000105105 ENSMUST00000199362 Gm31363 lincRNA Interval_137989 chr6 84008370 84010757 + 0 NA intron (ENSMUSG00000107682.1, intron 2 of 2) protein_coding-intron (ENSMUSG00000033788.15, intron 1 of 54) 2558 ENSMUSG00000107682.1 ENSMUSG00000107682 ENSMUST00000203143 Gm33024 antisense Interval_110761 chr4 8118660 8119644 + 0 NA intron (ENSMUSG00000083068.1, intron 1 of 1) processed_pseudogene-intron (ENSMUSG00000083068.1, intron 1 of 1) 532 ENSMUSG00000083068.1 ENSMUSG00000083068 ENSMUST00000120050 Gm11800 processed_pseudogene Interval_151751 chr7 126417824 126418148 + 0 NA Intergenic Intergenic -3436 ENSMUSG00000030724.7 ENSMUSG00000030724 ENSMUST00000206871 Cd19 protein_coding Interval_7902 chr1 134485292 134486300 + 0 NA exon (ENSMUSG00000026455.14, exon 8 of 12) protein_coding-exon (ENSMUSG00000026455.14, exon 8 of 12) -8852 ENSMUSG00000042229.9 ENSMUSG00000042229 ENSMUST00000047978 Rabif protein_coding Interval_35451 chr12 21906241 21906601 + 0 NA Intergenic Intergenic -129714 ENSMUSG00000091105.1 ENSMUSG00000091105 ENSMUST00000164169 Mrto4-ps2 processed_pseudogene Interval_164227 chr9 33004625 33005189 + 0 NA Intergenic Intergenic -26884 ENSMUSG00000098519.1 ENSMUSG00000098519 ENSMUST00000184476 Gm27166 lincRNA Interval_66297 chr16 32956685 32957370 + 0 NA intron (ENSMUSG00000022801.13, intron 4 of 18) protein_coding-intron (ENSMUSG00000022801.13, intron 4 of 20) 33809 ENSMUSG00000091997.1 ENSMUSG00000091997 ENSMUST00000163830 Gm6611 processed_pseudogene Interval_52341 chr14 45273594 45274125 + 0 NA exon (ENSMUSG00000115373.1, exon 1 of 1) sense_intronic-exon (ENSMUSG00000115373.1, exon 1 of 1) 609 ENSMUSG00000115373.1 ENSMUSG00000115373 ENSMUST00000227166 Gm49194 sense_intronic Interval_5826 chr1 92259372 92260684 + 0 NA Intergenic Intergenic -64334 ENSMUSG00000026313.16 ENSMUSG00000026313 ENSMUST00000212408 Hdac4 protein_coding Interval_162839 chr9 10212936 10213403 + 0 NA intron (ENSMUSG00000039488.15, intron 3 of 24) protein_coding-intron (ENSMUSG00000039488.15, intron 1 of 22) 77418 ENSMUSG00000093959.1 ENSMUSG00000093959 ENSMUST00000178287 Gm24496 miRNA Interval_127912 chr5 108902924 108903766 + 0 NA exon (ENSMUSG00000105808.1, exon 1 of 1) processed_pseudogene-exon (ENSMUSG00000105808.1, exon 1 of 1) 119 ENSMUSG00000105808.1 ENSMUSG00000105808 ENSMUST00000197347 Gm42627 processed_pseudogene Interval_74419 chr17 50122467 50123698 + 0 NA intron (ENSMUSG00000039316.14, intron 2 of 6) protein_coding-intron (ENSMUSG00000039316.14, intron 2 of 9) 9063 ENSMUSG00000117117.1 ENSMUSG00000117117 ENSMUST00000233275 Gm49901 lincRNA Interval_25664 chr11 50559012 50559705 + 0 NA Intergenic Intergenic -42726 ENSMUSG00000036545.9 ENSMUSG00000036545 ENSMUST00000127534 Adamts2 protein_coding Interval_83579 chr18 90100186 90100371 + 0 NA Intergenic Intergenic -81199 ENSMUSG00000118035.1 ENSMUSG00000118035 ENSMUST00000237041 Gm6173 processed_pseudogene Interval_438 chr1 5260643 5262128 + 0 NA Intergenic Intergenic 15952 ENSMUSG00000104352.1 ENSMUSG00000104352 ENSMUST00000193351 Gm7182 processed_pseudogene Interval_42463 chr13 13812407 13813002 + 0 NA intron (ENSMUSG00000021303.14, intron 3 of 3) protein_coding-intron (ENSMUSG00000021303.14, intron 3 of 3) -6575 ENSMUSG00000021303.14 ENSMUSG00000021303 ENSMUST00000220727 Gng4 protein_coding Interval_85651 chr19 29350306 29352254 + 0 NA exon (ENSMUSG00000016495.12, exon 1 of 2) protein_coding-exon (ENSMUSG00000016495.12, exon 1 of 2) 10127 ENSMUSG00000016495.12 ENSMUSG00000016495 ENSMUST00000139176 Plgrkt protein_coding Interval_43372 chr13 29819091 29819366 + 0 NA intron (ENSMUSG00000006191.17, intron 4 of 5) protein_coding-intron (ENSMUSG00000006191.17, intron 4 of 15) -121055 ENSMUSG00000086893.1 ENSMUSG00000086893 ENSMUST00000144277 Gm11365 antisense Interval_17503 chr10 77282257 77283326 + 0 NA Intergenic Intergenic 20343 ENSMUSG00000020260.9 ENSMUSG00000020260 ENSMUST00000218117 Pofut2 protein_coding Interval_157819 chr8 74190901 74191562 + 0 NA Intergenic Intergenic -79016 ENSMUSG00000098378.1 ENSMUSG00000098378 ENSMUST00000183704 Gm27864 miRNA Interval_168924 chr9 88989733 88990170 + 0 NA Intergenic Intergenic 4760 ENSMUSG00000103336.1 ENSMUSG00000103336 ENSMUST00000195301 Gm37993 TEC Interval_3869 chr1 64018412 64019518 + 0 NA Intergenic Intergenic 23536 ENSMUSG00000098487.1 ENSMUSG00000098487 ENSMUST00000184798 Mir6899 miRNA Interval_110203 chr3 154226015 154227081 + 0 NA intron (ENSMUSG00000028360.10, intron 4 of 21) protein_coding-intron (ENSMUSG00000028360.10, intron 4 of 21) 22952 ENSMUSG00000106500.1 ENSMUSG00000106500 ENSMUST00000200319 Gm42540 TEC Interval_161629 chr8 121668562 121669514 + 0 NA exon (ENSMUSG00000110673.1, exon 2 of 2) lincRNA-exon (ENSMUSG00000110673.1, exon 2 of 2) -2332 ENSMUSG00000064642.1 ENSMUSG00000064642 ENSMUST00000082708 Gm23299 snoRNA Interval_133378 chr6 4282147 4282629 + 0 NA Intergenic Intergenic -19539 ENSMUSG00000107510.1 ENSMUSG00000107510 ENSMUST00000204547 Gm44057 processed_pseudogene Interval_162654 chr9 7499109 7499518 + 0 NA Intergenic Intergenic -3039 ENSMUSG00000047562.3 ENSMUSG00000047562 ENSMUST00000034488 Mmp10 protein_coding Interval_149870 chr7 102113091 102113977 + 0 NA exon (ENSMUSG00000066279.3, exon 4 of 5) protein_coding-exon (ENSMUSG00000066279.3, exon 4 of 5) 3294 ENSMUSG00000066279.3 ENSMUSG00000066279 ENSMUST00000211408 Chrna10 protein_coding Interval_111684 chr4 25783204 25783510 + 0 NA intron (ENSMUSG00000055373.8, intron 1 of 2) protein_coding-intron (ENSMUSG00000055373.8, intron 1 of 2) 16498 ENSMUSG00000055373.8 ENSMUSG00000055373 ENSMUST00000149875 Fut9 protein_coding Interval_24226 chr11 31643872 31644109 + 0 NA Intergenic Intergenic 27737 ENSMUSG00000044502.16 ENSMUSG00000044502 ENSMUST00000109415 Bod1 protein_coding Interval_29468 chr11 84187320 84187716 + 0 NA intron (ENSMUSG00000020532.18, intron 2 of 4) protein_coding-intron (ENSMUSG00000020532.18, intron 1 of 55) -2075 ENSMUSG00000103122.1 ENSMUSG00000103122 ENSMUST00000194891 Gm37391 TEC Interval_158533 chr8 84296958 84298608 + 0 NA Intergenic Intergenic 5950 ENSMUSG00000109653.1 ENSMUSG00000109653 ENSMUST00000210948 Gm45608 processed_pseudogene Interval_133991 chr6 17517112 17517310 + 0 NA intron (ENSMUSG00000009376.15, intron 4 of 11) protein_coding-intron (ENSMUSG00000009376.15, intron 2 of 19) -17790 ENSMUSG00000009376.15 ENSMUSG00000009376 ENSMUST00000148903 Met protein_coding Interval_34107 chr11 120679656 120680287 + 0 NA intron (ENSMUSG00000025142.18, intron 4 of 5) protein_coding-intron (ENSMUSG00000025142.18, intron 4 of 15) -18796 ENSMUSG00000042988.10 ENSMUSG00000042988 ENSMUST00000150458 Notum protein_coding Interval_153633 chr8 4139446 4140692 + 0 NA Intergenic Intergenic 5971 ENSMUSG00000079168.4 ENSMUSG00000079168 ENSMUST00000130372 Cd209g protein_coding Interval_163632 chr9 22815423 22815719 + 0 NA intron (ENSMUSG00000035919.16, intron 21 of 22) protein_coding-intron (ENSMUSG00000035919.16, intron 20 of 21) -42736 ENSMUSG00000098940.1 ENSMUSG00000098940 ENSMUST00000184937 Gm27639 snRNA Interval_81565 chr18 61725726 61726855 + 0 NA promoter-TSS (ENSMUSG00000024580.8) protein_coding-promoter-TSS (ENSMUSG00000024580.8) 35 ENSMUSG00000024580.8 ENSMUSG00000024580 ENSMUST00000237466 Grpel2 protein_coding Interval_161651 chr8 121801079 121801838 + 0 NA exon (ENSMUSG00000040263.16, exon 1 of 2) protein_coding-exon (ENSMUSG00000040263.16, exon 1 of 2) -4957 ENSMUSG00000092418.1 ENSMUSG00000092418 ENSMUST00000173993 Gm20406 antisense Interval_147834 chr7 73960656 73960933 + 0 NA TTS (ENSMUSG00000025789.9) protein_coding-TTS (ENSMUSG00000025789.9) 12371 ENSMUSG00000102384.1 ENSMUSG00000102384 ENSMUST00000191751 Gm38143 processed_transcript Interval_157326 chr8 69324769 69325108 + 0 NA Intergenic Intergenic -4280 ENSMUSG00000110514.1 ENSMUSG00000110514 ENSMUST00000212857 Gm7688 processed_pseudogene Interval_167472 chr9 69681583 69681852 + 0 NA Intergenic Intergenic 79223 ENSMUSG00000059246.4 ENSMUSG00000059246 ENSMUST00000071281 Foxb1 protein_coding Interval_44047 chr13 40476407 40477541 + 0 NA Intergenic Intergenic -19214 ENSMUSG00000114248.1 ENSMUSG00000114248 ENSMUST00000226074 Gm8352 processed_pseudogene Interval_98302 chr2 150895450 150895836 + 0 NA intron (ENSMUSG00000032046.15, intron 1 of 12) protein_coding-intron (ENSMUSG00000032046.15, intron 1 of 12) -9757 ENSMUSG00000027454.10 ENSMUSG00000027454 ENSMUST00000123217 Gins1 protein_coding Interval_137050 chr6 66955042 66955719 + 0 NA intron (ENSMUSG00000036402.13, intron 3 of 4) protein_coding-intron (ENSMUSG00000036402.13, intron 3 of 4) 53033 ENSMUSG00000107634.1 ENSMUSG00000107634 ENSMUST00000204824 Gm36816 antisense Interval_164945 chr9 43280751 43281051 + 0 NA TTS (ENSMUSG00000095385.3) lincRNA-TTS (ENSMUSG00000095385.3) 15622 ENSMUSG00000095385.3 ENSMUSG00000095385 ENSMUST00000210037 D630033O11Rik lincRNA Interval_124863 chr5 57561776 57562121 + 0 NA Intergenic Intergenic -46621 ENSMUSG00000051116.6 ENSMUSG00000051116 ENSMUST00000153583 Gm8121 processed_pseudogene Interval_69228 chr16 91526170 91527692 + 0 NA TTS (ENSMUSG00000099308.1) miRNA-TTS (ENSMUSG00000099308.1) 613 ENSMUSG00000099308.1 ENSMUSG00000099308 ENSMUST00000183385 Mir6367 miRNA Interval_83870 chr19 5218497 5218833 + 0 NA intron (ENSMUSG00000024855.10, intron 2 of 4) protein_coding-intron (ENSMUSG00000024855.10, intron 1 of 23) -17362 ENSMUSG00000098803.1 ENSMUSG00000098803 ENSMUST00000183577 Gm27468 miRNA Interval_56064 chr14 105258266 105259369 + 0 NA promoter-TSS (ENSMUSG00000053253.16) protein_coding-promoter-TSS (ENSMUSG00000053253.16) 244 ENSMUSG00000053253.16 ENSMUSG00000053253 ENSMUST00000149358 Ndfip2 protein_coding Interval_34486 chr12 4571810 4572573 + 0 NA TTS (ENSMUSG00000112505.1) lincRNA-TTS (ENSMUSG00000112505.1) -2653 ENSMUSG00000112819.1 ENSMUSG00000112819 ENSMUST00000220320 Gm46332 lincRNA Interval_154244 chr8 13705644 13706306 + 0 NA promoter-TSS (ENSMUSG00000090336.5) protein_coding-promoter-TSS (ENSMUSG00000090336.5) 8 ENSMUSG00000090336.5 ENSMUSG00000090336 ENSMUST00000208283 Cfap97d2 protein_coding Interval_80096 chr18 37490972 37491893 + 0 NA exon (ENSMUSG00000048347.5, exon 1 of 1) protein_coding-exon (ENSMUSG00000048347.5, exon 1 of 1) 1967 ENSMUSG00000048347.5 ENSMUSG00000048347 ENSMUST00000055949 Pcdhb18 protein_coding Interval_98050 chr2 147189197 147190120 + 0 NA intron (ENSMUSG00000027434.11, intron 1 of 1) protein_coding-intron (ENSMUSG00000027434.11, intron 1 of 1) 2234 ENSMUSG00000053545.6 ENSMUSG00000053545 ENSMUST00000144411 6430503K07Rik antisense Interval_116120 chr4 107923063 107923964 + 0 NA promoter-TSS (ENSMUSG00000028607.16) protein_coding-promoter-TSS (ENSMUSG00000028607.16) -10747 ENSMUSG00000028607.16 ENSMUSG00000028607 ENSMUST00000131644 Cpt2 protein_coding Interval_29032 chr11 80001479 80002659 + 0 NA intron (ENSMUSG00000017548.15, intron 3 of 5) protein_coding-intron (ENSMUSG00000017548.15, intron 4 of 15) 8963 ENSMUSG00000017548.15 ENSMUSG00000017548 ENSMUST00000144188 Suz12 protein_coding Interval_172078 chrX 6317811 6318066 + 0 NA intron (ENSMUSG00000023279.7, intron 1 of 1) protein_coding-intron (ENSMUSG00000023279.7, intron 1 of 1) 2783 ENSMUSG00000023279.7 ENSMUSG00000023279 ENSMUST00000024049 Bmp15 protein_coding Interval_17485 chr10 77192977 77194099 + 0 NA Intergenic Intergenic 56438 ENSMUSG00000112612.1 ENSMUSG00000112612 ENSMUST00000218871 Gm7775 processed_pseudogene Interval_59459 chr15 53301377 53301720 + 0 NA intron (ENSMUSG00000061731.9, intron 1 of 10) protein_coding-intron (ENSMUSG00000061731.9, intron 1 of 10) -82371 ENSMUSG00000087805.2 ENSMUSG00000087805 ENSMUST00000157180 Gm27926 snRNA Interval_80808 chr18 47366488 47367441 + 0 NA intron (ENSMUSG00000019647.16, intron 1 of 16) protein_coding-intron (ENSMUSG00000019647.16, intron 1 of 18) -33616 ENSMUSG00000019647.16 ENSMUSG00000019647 ENSMUST00000144223 Sema6a protein_coding Interval_101219 chr2 179558612 179559245 + 0 NA intron (ENSMUSG00000000305.12, intron 2 of 2) protein_coding-intron (ENSMUSG00000000305.12, intron 2 of 15) 54639 ENSMUSG00000083410.1 ENSMUSG00000083410 ENSMUST00000120800 Gm14300 processed_pseudogene Interval_171526 chr9 119027869 119028299 + 0 NA intron (ENSMUSG00000047409.13, intron 4 of 5) protein_coding-intron (ENSMUSG00000047409.13, intron 4 of 7) -3712 ENSMUSG00000065513.1 ENSMUSG00000065513 ENSMUST00000083579 Mir26a-1 miRNA Interval_140715 chr6 120803374 120804021 + 0 NA TTS (ENSMUSG00000019210.10) protein_coding-TTS (ENSMUSG00000019210.10) -6027 ENSMUSG00000093409.1 ENSMUSG00000093409 ENSMUST00000176615 Gm25193 miRNA Interval_18756 chr10 90046032 90046208 + 0 NA promoter-TSS (ENSMUSG00000058589.14) protein_coding-promoter-TSS (ENSMUSG00000058589.14) 88697 ENSMUSG00000112140.1 ENSMUSG00000112140 ENSMUST00000217774 Gm5780 processed_pseudogene Interval_146792 chr7 51540660 51541335 + 0 NA intron (ENSMUSG00000055489.8, intron 4 of 20) protein_coding-intron (ENSMUSG00000055489.8, intron 5 of 21) 29890 ENSMUSG00000055489.8 ENSMUSG00000055489 ENSMUST00000207717 Ano5 protein_coding Interval_140799 chr6 121424497 121424846 + 0 NA intron (ENSMUSG00000040797.16, intron 2 of 12) protein_coding-intron (ENSMUSG00000040797.16, intron 3 of 13) 48994 ENSMUSG00000040797.16 ENSMUSG00000040797 ENSMUST00000151397 Iqsec3 protein_coding Interval_117651 chr4 125289047 125290282 + 0 NA Intergenic Intergenic 61067 ENSMUSG00000087010.1 ENSMUSG00000087010 ENSMUST00000130055 1700041M05Rik lincRNA Interval_51772 chr14 32105838 32107536 + 0 NA Intergenic Intergenic 20902 ENSMUSG00000021906.14 ENSMUSG00000021906 ENSMUST00000164396 Oxnad1 protein_coding Interval_57203 chr15 7636653 7636914 + 0 NA Intergenic Intergenic 33557 ENSMUSG00000103142.1 ENSMUSG00000103142 ENSMUST00000194645 Gm37743 TEC Interval_22330 chr11 8868956 8869173 + 0 NA intron (ENSMUSG00000046634.12, intron 26 of 42) protein_coding-intron (ENSMUSG00000046634.12, intron 33 of 49) 16232 ENSMUSG00000082095.1 ENSMUSG00000082095 ENSMUST00000119652 Gm11991 processed_pseudogene Interval_41795 chr12 119353909 119354126 + 0 NA TTS (ENSMUSG00000113192.1) processed_pseudogene-TTS (ENSMUSG00000113192.1) 1499 ENSMUSG00000113192.1 ENSMUSG00000113192 ENSMUST00000222541 Gm18032 processed_pseudogene Interval_75357 chr17 66101028 66102146 + 0 NA promoter-TSS (ENSMUSG00000024099.15) protein_coding-promoter-TSS (ENSMUSG00000024099.15) -78 ENSMUSG00000024099.15 ENSMUSG00000024099 ENSMUST00000147484 Ndufv2 protein_coding Interval_68888 chr16 87840862 87841378 + 0 NA Intergenic Intergenic 53548 ENSMUSG00000055972.5 ENSMUSG00000055972 ENSMUST00000189929 2810407A14Rik lincRNA Interval_104844 chr3 75833876 75834127 + 0 NA Intergenic Intergenic 85804 ENSMUSG00000100962.3 ENSMUSG00000100962 ENSMUST00000189155 Gm29133 protein_coding Interval_157173 chr8 66881368 66882327 + 0 NA intron (ENSMUSG00000014907.10, intron 4 of 4) protein_coding-intron (ENSMUSG00000014907.10, intron 4 of 7) 20890 ENSMUSG00000014907.10 ENSMUSG00000014907 ENSMUST00000212916 Naf1 protein_coding Interval_137860 chr6 82998136 82998630 + 0 NA intron (ENSMUSG00000030041.9, intron 4 of 9) protein_coding-intron (ENSMUSG00000030041.9, intron 4 of 9) 6738 ENSMUSG00000107599.1 ENSMUSG00000107599 ENSMUST00000203285 Gm43981 TEC Interval_149234 chr7 96519065 96519663 + 0 NA intron (ENSMUSG00000048078.16, intron 4 of 32) protein_coding-intron (ENSMUSG00000048078.16, intron 4 of 32) -83347 ENSMUSG00000082780.2 ENSMUSG00000082780 ENSMUST00000117302 Rps11-ps5 processed_pseudogene Interval_1097 chr1 15651782 15652026 + 0 NA intron (ENSMUSG00000092083.4, intron 2 of 2) protein_coding-intron (ENSMUSG00000092083.4, intron 1 of 1) 34142 ENSMUSG00000088829.1 ENSMUSG00000088829 ENSMUST00000158204 Gm25227 snoRNA Interval_65946 chr16 30435475 30436642 + 0 NA Intergenic Intergenic -16530 ENSMUSG00000116960.1 ENSMUSG00000116960 ENSMUST00000231864 Gm49679 processed_pseudogene Interval_23240 chr11 20800800 20801050 + 0 NA Intergenic Intergenic 30131 ENSMUSG00000042363.14 ENSMUSG00000042363 ENSMUST00000132928 Lgalsl protein_coding Interval_37074 chr12 57460505 57461411 + 0 NA exon (ENSMUSG00000047022.18, exon 12 of 13) protein_coding-exon (ENSMUSG00000047022.18, exon 12 of 13) -10838 ENSMUSG00000086372.1 ENSMUSG00000086372 ENSMUST00000145464 Gm16246 antisense Interval_77876 chr18 4980389 4980727 + 0 NA intron (ENSMUSG00000024236.18, intron 3 of 35) protein_coding-intron (ENSMUSG00000024236.18, intron 1 of 37) -54608 ENSMUSG00000024236.18 ENSMUSG00000024236 ENSMUST00000129543 Svil protein_coding Interval_106783 chr3 100767595 100768680 + 0 NA Intergenic Intergenic -29424 ENSMUSG00000087759.1 ENSMUSG00000087759 ENSMUST00000157134 Gm23465 misc_RNA Interval_146953 chr7 56212510 56212820 + 0 NA intron (ENSMUSG00000030451.16, intron 77 of 90) protein_coding-intron (ENSMUSG00000030451.16, intron 79 of 92) 4588 ENSMUSG00000108347.1 ENSMUSG00000108347 ENSMUST00000206781 Gm19187 processed_pseudogene Interval_69142 chr16 90910812 90912070 + 0 NA Intergenic Intergenic -3739 ENSMUSG00000083226.2 ENSMUSG00000083226 ENSMUST00000117990 Gm7831 processed_pseudogene Interval_10278 chr1 167914979 167916898 + 0 NA Intergenic Intergenic -88201 ENSMUSG00000093538.2 ENSMUSG00000093538 ENSMUST00000177351 Gm20711 antisense Interval_137863 chr6 83031269 83031549 + 0 NA TTS (ENSMUSG00000068335.6) protein_coding-TTS (ENSMUSG00000068335.6) 1152 ENSMUSG00000068335.6 ENSMUSG00000068335 ENSMUST00000204900 Dok1 protein_coding Interval_170640 chr9 109847609 109849046 + 0 NA intron (ENSMUSG00000038357.10, intron 3 of 3) protein_coding-intron (ENSMUSG00000038357.10, intron 3 of 3) 1290 ENSMUSG00000038357.10 ENSMUSG00000038357 ENSMUST00000112022 Camp protein_coding Interval_73634 chr17 42007118 42007496 + 0 NA Intergenic Intergenic -308682 ENSMUSG00000042256.5 ENSMUSG00000042256 ENSMUST00000232968 Ptchd4 protein_coding Interval_134520 chr6 29308042 29309704 + 0 NA Intergenic Intergenic -10267 ENSMUSG00000039742.15 ENSMUSG00000039742 ENSMUST00000166462 Fam71f1 protein_coding Interval_62896 chr15 97782459 97783026 + 0 NA intron (ENSMUSG00000081534.3, intron 1 of 2) protein_coding-intron (ENSMUSG00000081534.3, intron 1 of 2) 4222 ENSMUSG00000081534.3 ENSMUSG00000081534 ENSMUST00000229084 Slc48a1 protein_coding Interval_131293 chr5 136216422 136217329 + 0 NA Intergenic Intergenic -5089 ENSMUSG00000106243.1 ENSMUSG00000106243 ENSMUST00000197164 Gm5050 processed_pseudogene Interval_154982 chr8 25479998 25480228 + 0 NA intron (ENSMUSG00000110063.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000110063.1, intron 1 of 2) 7472 ENSMUSG00000110063.1 ENSMUSG00000110063 ENSMUST00000211266 Gm31045 lincRNA Interval_45178 chr13 52967358 52968805 + 0 NA exon (ENSMUSG00000056749.7, exon 2 of 2) protein_coding-exon (ENSMUSG00000056749.7, exon 2 of 2) -3349 ENSMUSG00000065771.1 ENSMUSG00000065771 ENSMUST00000083837 n-R5s54 rRNA Interval_158775 chr8 86325172 86325477 + 0 NA Intergenic Intergenic 32823 ENSMUSG00000065737.1 ENSMUSG00000065737 ENSMUST00000083803 Gm24490 snRNA Interval_81146 chr18 54963025 54963612 + 0 NA intron (ENSMUSG00000052713.9, intron 2 of 9) protein_coding-intron (ENSMUSG00000052713.9, intron 2 of 9) -6561 ENSMUSG00000052713.9 ENSMUSG00000052713 ENSMUST00000237009 Zfp608 protein_coding Interval_79827 chr18 35412528 35413433 + 0 NA intron (ENSMUSG00000024357.10, intron 2 of 8) protein_coding-intron (ENSMUSG00000024357.10, intron 3 of 9) -76124 ENSMUSG00000117731.1 ENSMUSG00000117731 ENSMUST00000237123 Gm50145 antisense Interval_17239 chr10 75211682 75212776 + 0 NA promoter-TSS (ENSMUSG00000033444.14) protein_coding-promoter-TSS (ENSMUSG00000033444.14) 35853 ENSMUSG00000009681.10 ENSMUSG00000009681 ENSMUST00000219807 Bcr protein_coding Interval_33305 chr11 115823450 115824622 + 0 NA promoter-TSS (ENSMUSG00000020782.18) protein_coding-promoter-TSS (ENSMUSG00000020782.18) -22 ENSMUSG00000020782.18 ENSMUSG00000020782 ENSMUST00000132999 Llgl2 protein_coding Interval_27255 chr11 64991820 64992732 + 0 NA exon (ENSMUSG00000020549.14, exon 13 of 25) protein_coding-exon (ENSMUSG00000020549.14, exon 13 of 25) 13204 ENSMUSG00000020549.14 ENSMUSG00000020549 ENSMUST00000128693 Elac2 protein_coding Interval_141839 chr6 134848341 134848761 + 0 NA intron (ENSMUSG00000032652.13, intron 1 of 1) protein_coding-intron (ENSMUSG00000032652.13, intron 1 of 4) -2607 ENSMUSG00000032652.13 ENSMUSG00000032652 ENSMUST00000203742 Crebl2 protein_coding Interval_13477 chr10 18508010 18508235 + 0 NA intron (ENSMUSG00000039835.16, intron 3 of 6) protein_coding-intron (ENSMUSG00000039835.16, intron 3 of 6) 37942 ENSMUSG00000019853.6 ENSMUSG00000019853 ENSMUST00000214548 Hebp2 protein_coding Interval_116717 chr4 116811366 116811670 + 0 NA intron (ENSMUSG00000028687.17, intron 2 of 3) protein_coding-intron (ENSMUSG00000028687.17, intron 1 of 15) -2801 ENSMUSG00000028687.17 ENSMUSG00000028687 ENSMUST00000135449 Mutyh protein_coding Interval_86490 chr19 41053113 41054113 + 0 NA intron (ENSMUSG00000025014.13, intron 9 of 10) protein_coding-intron (ENSMUSG00000025014.13, intron 9 of 11) 14510 ENSMUSG00000050121.9 ENSMUSG00000050121 ENSMUST00000087176 Opalin protein_coding Interval_69345 chr16 92368883 92369697 + 0 NA Intergenic Intergenic -10416 ENSMUSG00000039639.7 ENSMUSG00000039639 ENSMUST00000166707 Kcne1 protein_coding Interval_112754 chr4 44626235 44626480 + 0 NA intron (ENSMUSG00000014030.15, intron 1 of 5) protein_coding-intron (ENSMUSG00000014030.15, intron 6 of 9) -18789 ENSMUSG00000092761.1 ENSMUSG00000092761 ENSMUST00000175020 Mir5120 miRNA Interval_150078 chr7 105685362 105686233 + 0 NA exon (ENSMUSG00000030882.19, exon 16 of 44) protein_coding-exon (ENSMUSG00000030882.19, exon 16 of 44) 4770 ENSMUSG00000081911.1 ENSMUSG00000081911 ENSMUST00000118658 Mrps36-ps2 processed_pseudogene Interval_82491 chr18 74458297 74459564 + 0 NA intron (ENSMUSG00000025885.18, intron 1 of 39) protein_coding-intron (ENSMUSG00000025885.18, intron 1 of 38) 38125 ENSMUSG00000118303.1 ENSMUSG00000118303 ENSMUST00000235981 Gm50168 processed_pseudogene Interval_167149 chr9 65654924 65655878 + 0 NA intron (ENSMUSG00000032387.15, intron 7 of 8) protein_coding-intron (ENSMUSG00000032387.15, intron 6 of 7) -3576 ENSMUSG00000032387.15 ENSMUSG00000032387 ENSMUST00000216769 Rbpms2 protein_coding Interval_164682 chr9 40559371 40559786 + 0 NA promoter-TSS (ENSMUSG00000111858.1) lincRNA-promoter-TSS (ENSMUSG00000111858.1) 1351 ENSMUSG00000111858.1 ENSMUSG00000111858 ENSMUST00000214616 Gm48277 lincRNA Interval_87583 chr19 53576886 53577101 + 0 NA Intergenic Intergenic 12075 ENSMUSG00000071497.4 ENSMUSG00000071497 ENSMUST00000095978 Nutf2-ps1 protein_coding Interval_69110 chr16 90726827 90727988 + 0 NA promoter-TSS (ENSMUSG00000022978.11) protein_coding-promoter-TSS (ENSMUSG00000022978.11) -268 ENSMUSG00000022978.11 ENSMUSG00000022978 ENSMUST00000147546 Mis18a protein_coding Interval_165149 chr9 44840808 44841521 + 0 NA TTS (ENSMUSG00000002028.13) protein_coding-TTS (ENSMUSG00000002028.13) 18011 ENSMUSG00000111017.1 ENSMUSG00000111017 ENSMUST00000213541 Gm48314 TEC Interval_125607 chr5 72571719 72573090 + 0 NA TTS (ENSMUSG00000105865.2) processed_pseudogene-TTS (ENSMUSG00000105865.2) 230 ENSMUSG00000105865.2 ENSMUSG00000105865 ENSMUST00000197039 Gm34144 processed_pseudogene Interval_146527 chr7 46650209 46650639 + 0 NA intron (ENSMUSG00000040046.14, intron 7 of 8) protein_coding-intron (ENSMUSG00000040046.14, intron 9 of 10) -10620 ENSMUSG00000030839.12 ENSMUSG00000030839 ENSMUST00000137988 Sergef protein_coding Interval_43112 chr13 24254159 24254862 + 0 NA intron (ENSMUSG00000021338.17, intron 2 of 5) protein_coding-intron (ENSMUSG00000021338.17, intron 2 of 37) 37295 ENSMUSG00000083409.1 ENSMUSG00000083409 ENSMUST00000119226 Gm11340 processed_pseudogene Interval_76362 chr17 79508196 79508395 + 0 NA Intergenic Intergenic 153596 ENSMUSG00000118651.1 ENSMUSG00000118651 ENSMUST00000239444 CT030740.1 antisense Interval_38864 chr12 83497901 83498227 + 0 NA Intergenic Intergenic -7018 ENSMUSG00000113664.1 ENSMUSG00000113664 ENSMUST00000221402 Gm47184 processed_pseudogene Interval_47710 chr13 91578305 91579005 + 0 NA intron (ENSMUSG00000003992.15, intron 4 of 6) protein_coding-intron (ENSMUSG00000003992.15, intron 4 of 16) 117485 ENSMUSG00000003992.15 ENSMUSG00000003992 ENSMUST00000137658 Ssbp2 protein_coding Interval_99892 chr2 165653169 165653386 + 0 NA intron (ENSMUSG00000017897.18, intron 1 of 15) protein_coding-intron (ENSMUSG00000017897.18, intron 1 of 15) -2041 ENSMUSG00000017897.18 ENSMUSG00000017897 ENSMUST00000128280 Eya2 protein_coding Interval_2157 chr1 36770024 36771831 + 0 NA promoter-TSS (ENSMUSG00000026117.10) protein_coding-promoter-TSS (ENSMUSG00000026117.10) -5755 ENSMUSG00000097291.1 ENSMUSG00000097291 ENSMUST00000180475 Gm18828 transcribed_processed_pseudogene Interval_53651 chr14 60597460 60597759 + 0 NA promoter-TSS (ENSMUSG00000114408.1) processed_pseudogene-promoter-TSS (ENSMUSG00000114408.1) -707 ENSMUSG00000114408.1 ENSMUSG00000114408 ENSMUST00000224210 Gm47810 processed_pseudogene Interval_133369 chr6 4052625 4052910 + 0 NA Intergenic Intergenic -5182 ENSMUSG00000107681.1 ENSMUSG00000107681 ENSMUST00000204264 4930528H21Rik lincRNA Interval_60586 chr15 75460760 75460965 + 0 NA Intergenic Intergenic 11405 ENSMUSG00000093626.1 ENSMUSG00000093626 ENSMUST00000177479 Ly6l protein_coding Interval_25058 chr11 43565610 43566528 + 0 NA intron (ENSMUSG00000044707.7, intron 3 of 5) protein_coding-intron (ENSMUSG00000044707.7, intron 3 of 5) 15047 ENSMUSG00000085239.1 ENSMUSG00000085239 ENSMUST00000130874 Gm12150 antisense Interval_60695 chr15 76207337 76208730 + 0 NA intron (ENSMUSG00000022565.15, intron 2 of 18) protein_coding-intron (ENSMUSG00000022565.15, intron 1 of 31) -1712 ENSMUSG00000022565.15 ENSMUSG00000022565 ENSMUST00000165135 Plec protein_coding Interval_124722 chr5 53560883 53561478 + 0 NA intron (ENSMUSG00000039191.12, intron 1 of 10) protein_coding-intron (ENSMUSG00000039191.12, intron 1 of 10) -13858 ENSMUSG00000107111.1 ENSMUSG00000107111 ENSMUST00000202154 Gm40304 antisense Interval_169235 chr9 95694739 95695324 + 0 NA TTS (ENSMUSG00000015354.8) protein_coding-TTS (ENSMUSG00000015354.8) 14725 ENSMUSG00000015354.8 ENSMUSG00000015354 ENSMUST00000151210 Pcolce2 protein_coding Interval_31031 chr11 97803814 97804163 + 0 NA intron (ENSMUSG00000038366.15, intron 1 of 3) protein_coding-intron (ENSMUSG00000038366.15, intron 1 of 6) -11260 ENSMUSG00000038366.15 ENSMUSG00000038366 ENSMUST00000107568 Lasp1 protein_coding Interval_125939 chr5 76026424 76027115 + 0 NA Intergenic Intergenic -16329 ENSMUSG00000106756.1 ENSMUSG00000106756 ENSMUST00000201402 Gm32780 lincRNA Interval_110726 chr4 7279647 7280097 + 0 NA Intergenic Intergenic -240358 ENSMUSG00000083023.1 ENSMUSG00000083023 ENSMUST00000121663 Gm11804 processed_pseudogene Interval_137109 chr6 67492018 67492328 + 0 NA promoter-TSS (ENSMUSG00000049093.9) protein_coding-promoter-TSS (ENSMUSG00000049093.9) -318 ENSMUSG00000049093.9 ENSMUSG00000049093 ENSMUST00000118364 Il23r protein_coding Interval_37685 chr12 71105828 71106063 + 0 NA Intergenic Intergenic -5525 ENSMUSG00000021078.5 ENSMUSG00000021078 ENSMUST00000221962 Tomm20l protein_coding Interval_164343 chr9 35522994 35524599 + 0 NA Intergenic Intergenic -5527 ENSMUSG00000098590.4 ENSMUSG00000098590 ENSMUST00000183573 Gm1113 protein_coding Interval_28015 chr11 72224455 72225547 + 0 NA Intergenic Intergenic 9829 ENSMUSG00000053574.5 ENSMUSG00000053574 ENSMUST00000124762 4930563E22Rik protein_coding Interval_31098 chr11 98127521 98127769 + 0 NA TTS (ENSMUSG00000020883.18) protein_coding-TTS (ENSMUSG00000020883.18) 22758 ENSMUSG00000020883.18 ENSMUSG00000020883 ENSMUST00000148473 Fbxl20 protein_coding Interval_124026 chr5 37368719 37368926 + 0 NA intron (ENSMUSG00000050248.11, intron 7 of 11) protein_coding-intron (ENSMUSG00000050248.11, intron 7 of 19) -21082 ENSMUSG00000050248.11 ENSMUSG00000050248 ENSMUST00000159854 Evc2 protein_coding Interval_38871 chr12 83523717 83524230 + 0 NA promoter-TSS (ENSMUSG00000021222.9) protein_coding-promoter-TSS (ENSMUSG00000021222.9) -2027 ENSMUSG00000021222.9 ENSMUSG00000021222 ENSMUST00000221944 Dcaf4 protein_coding Interval_104888 chr3 78340994 78341249 + 0 NA Intergenic Intergenic 64817 ENSMUSG00000104782.1 ENSMUSG00000104782 ENSMUST00000198459 Gm43326 TEC Interval_141405 chr6 128063103 128064299 + 0 NA intron (ENSMUSG00000030352.15, intron 1 of 7) protein_coding-intron (ENSMUSG00000030352.15, intron 2 of 8) -28696 ENSMUSG00000030352.15 ENSMUSG00000030352 ENSMUST00000127075 Tspan9 protein_coding Interval_41404 chr12 113403896 113404292 + 0 NA Intergenic Intergenic 6865 ENSMUSG00000102832.1 ENSMUSG00000102832 ENSMUST00000192434 Gm5190 processed_pseudogene Interval_135052 chr6 34985475 34985671 + 0 NA intron (ENSMUSG00000029847.13, intron 1 of 11) protein_coding-intron (ENSMUSG00000029847.13, intron 1 of 11) 2831 ENSMUSG00000029847.13 ENSMUSG00000029847 ENSMUST00000144079 Slc23a4 protein_coding Interval_22305 chr11 8634674 8636513 + 0 NA intron (ENSMUSG00000020422.14, intron 1 of 30) protein_coding-intron (ENSMUSG00000020422.14, intron 1 of 30) 29088 ENSMUSG00000020422.14 ENSMUSG00000020422 ENSMUST00000134823 Tns3 protein_coding Interval_8981 chr1 152883175 152883525 + 0 NA intron (ENSMUSG00000042772.15, intron 1 of 22) protein_coding-intron (ENSMUSG00000042772.15, intron 1 of 21) -3052 ENSMUSG00000100394.1 ENSMUSG00000100394 ENSMUST00000185888 Gm28791 sense_intronic Interval_85479 chr19 27309080 27309499 + 0 NA Intergenic Intergenic -13299 ENSMUSG00000047298.3 ENSMUSG00000047298 ENSMUST00000056708 Kcnv2 protein_coding Interval_109374 chr3 140832068 140832343 + 0 NA Intergenic Intergenic 7432 ENSMUSG00000095465.2 ENSMUSG00000095465 ENSMUST00000178845 Gm6214 processed_pseudogene Interval_161663 chr8 121873915 121874807 + 0 NA intron (ENSMUSG00000092329.1, intron 1 of 15) protein_coding-intron (ENSMUSG00000092329.1, intron 1 of 15) -16758 ENSMUSG00000098109.1 ENSMUSG00000098109 ENSMUST00000182121 9530085P06Rik TEC Interval_152822 chr7 138352781 138353104 + 0 NA intron (ENSMUSG00000091002.2, intron 4 of 6) protein_coding-intron (ENSMUSG00000091002.2, intron 4 of 11) 44788 ENSMUSG00000091002.2 ENSMUSG00000091002 ENSMUST00000162222 Tcerg1l protein_coding Interval_22838 chr11 16525011 16526829 + 0 NA Intergenic Intergenic 11387 ENSMUSG00000084347.3 ENSMUSG00000084347 ENSMUST00000120718 Akt2-ps processed_pseudogene Interval_138388 chr6 87795393 87796515 + 0 NA TTS (ENSMUSG00000108064.1) TEC-TTS (ENSMUSG00000108064.1) 3273 ENSMUSG00000108064.1 ENSMUSG00000108064 ENSMUST00000203746 Gm44423 TEC Interval_122299 chr5 21027451 21027940 + 0 NA intron (ENSMUSG00000028771.13, intron 1 of 7) protein_coding-intron (ENSMUSG00000028771.13, intron 2 of 17) -4057 ENSMUSG00000106158.1 ENSMUSG00000106158 ENSMUST00000196295 Gm43216 TEC Interval_145459 chr7 34888249 34889834 + 0 NA Intergenic Intergenic 54944 ENSMUSG00000077469.1 ENSMUSG00000077469 ENSMUST00000104281 Gm25922 snoRNA Interval_113901 chr4 59746509 59746882 + 0 NA intron (ENSMUSG00000045071.14, intron 2 of 2) protein_coding-intron (ENSMUSG00000045071.14, intron 3 of 3) 13437 ENSMUSG00000045071.14 ENSMUSG00000045071 ENSMUST00000221633 E130308A19Rik protein_coding Interval_120124 chr4 141972571 141972982 + 0 NA intron (ENSMUSG00000051435.11, intron 9 of 10) protein_coding-intron (ENSMUSG00000051435.11, intron 7 of 31) -4003 ENSMUSG00000081079.1 ENSMUSG00000081079 ENSMUST00000119881 Gm13059 processed_pseudogene Interval_43813 chr13 36903453 36904550 + 0 NA intron (ENSMUSG00000039109.16, intron 11 of 14) protein_coding-intron (ENSMUSG00000039109.16, intron 11 of 14) -39376 ENSMUSG00000114884.1 ENSMUSG00000114884 ENSMUST00000224473 Gm47675 lincRNA Interval_59260 chr15 50246540 50247007 + 0 NA Intergenic Intergenic -40125 ENSMUSG00000115478.1 ENSMUSG00000115478 ENSMUST00000227182 Gm49198 lincRNA Interval_3196 chr1 54663416 54663809 + 0 NA intron (ENSMUSG00000052331.14, intron 19 of 27) protein_coding-intron (ENSMUSG00000052331.14, intron 19 of 27) -14999 ENSMUSG00000052331.14 ENSMUSG00000052331 ENSMUST00000177679 Ankrd44 protein_coding Interval_164770 chr9 41579874 41580196 + 0 NA promoter-TSS (ENSMUSG00000074415.14) processed_transcript-promoter-TSS (ENSMUSG00000074415.14) -1873 ENSMUSG00000100158.1 ENSMUSG00000100158 ENSMUST00000185538 Gm28119 sense_intronic Interval_47419 chr13 83744734 83745740 + 0 NA intron (ENSMUSG00000050334.12, intron 1 of 2) lincRNA-intron (ENSMUSG00000050334.12, intron 3 of 3) 6374 ENSMUSG00000050334.12 ENSMUSG00000050334 ENSMUST00000187663 C130071C03Rik lincRNA Interval_152375 chr7 132551270 132552360 + 0 NA intron (ENSMUSG00000030849.18, intron 2 of 6) protein_coding-intron (ENSMUSG00000030849.18, intron 2 of 6) 23903 ENSMUSG00000030934.9 ENSMUSG00000030934 ENSMUST00000211545 Oat protein_coding Interval_151201 chr7 119515406 119515850 + 0 NA intron (ENSMUSG00000030968.3, intron 2 of 11) protein_coding-intron (ENSMUSG00000030968.3, intron 2 of 11) -1326 ENSMUSG00000098014.1 ENSMUSG00000098014 ENSMUST00000182878 Gm26967 sense_intronic Interval_99129 chr2 157374788 157377561 + 0 NA intron (ENSMUSG00000063019.5, intron 1 of 2) protein_coding-intron (ENSMUSG00000063019.5, intron 1 of 2) 8580 ENSMUSG00000063019.5 ENSMUSG00000063019 ENSMUST00000081202 Manbal protein_coding Interval_66611 chr16 35627807 35629250 + 0 NA intron (ENSMUSG00000052133.16, intron 3 of 5) protein_coding-intron (ENSMUSG00000052133.16, intron 3 of 21) -30057 ENSMUSG00000052133.16 ENSMUSG00000052133 ENSMUST00000128966 Sema5b protein_coding Interval_30730 chr11 96165172 96165797 + 0 NA TTS (ENSMUSG00000038756.13) protein_coding-TTS (ENSMUSG00000038756.13) -12067 ENSMUSG00000086337.1 ENSMUSG00000086337 ENSMUST00000145517 Gm11535 lincRNA Interval_79740 chr18 34823261 34824224 + 0 NA intron (ENSMUSG00000038773.11, intron 13 of 22) protein_coding-intron (ENSMUSG00000038773.11, intron 14 of 23) -16847 ENSMUSG00000038555.7 ENSMUSG00000038555 ENSMUST00000043484 Reep2 protein_coding Interval_96907 chr2 129406377 129406803 + 0 NA Intergenic Intergenic -27194 ENSMUSG00000081888.1 ENSMUSG00000081888 ENSMUST00000122326 Spcs2-ps unprocessed_pseudogene Interval_38099 chr12 75645596 75646026 + 0 NA intron (ENSMUSG00000045690.8, intron 1 of 2) protein_coding-intron (ENSMUSG00000045690.8, intron 1 of 1) -14493 ENSMUSG00000118552.1 ENSMUSG00000118552 ENSMUST00000238938 AC124742.1 protein_coding Interval_130718 chr5 129977033 129977262 + 0 NA exon (ENSMUSG00000066735.8, exon 2 of 4) protein_coding-exon (ENSMUSG00000066735.8, exon 2 of 4) 153 ENSMUSG00000066735.8 ENSMUSG00000066735 ENSMUST00000202486 Vkorc1l1 protein_coding Interval_21790 chr11 4352620 4353291 + 0 NA intron (ENSMUSG00000020419.11, intron 10 of 10) protein_coding-intron (ENSMUSG00000020419.11, intron 11 of 11) -28700 ENSMUSG00000065627.1 ENSMUSG00000065627 ENSMUST00000083693 Gm24803 snRNA Interval_57851 chr15 23170917 23171121 + 0 NA intron (ENSMUSG00000040420.15, intron 1 of 1) protein_coding-intron (ENSMUSG00000040420.15, intron 1 of 9) -2432 ENSMUSG00000040420.15 ENSMUSG00000040420 ENSMUST00000167623 Cdh18 protein_coding Interval_122714 chr5 24835704 24836333 + 0 NA intron (ENSMUSG00000028945.9, intron 1 of 2) protein_coding-intron (ENSMUSG00000028945.9, intron 1 of 7) 6591 ENSMUSG00000028945.9 ENSMUSG00000028945 ENSMUST00000196039 Rheb protein_coding Interval_152406 chr7 132810965 132811517 + 0 NA intron (ENSMUSG00000030956.15, intron 1 of 3) protein_coding-intron (ENSMUSG00000030956.15, intron 1 of 3) -8491 ENSMUSG00000030956.15 ENSMUSG00000030956 ENSMUST00000148303 Fam53b protein_coding Interval_83665 chr19 3575246 3576523 + 0 NA promoter-TSS (ENSMUSG00000024908.15) protein_coding-promoter-TSS (ENSMUSG00000024908.15) -162 ENSMUSG00000024908.15 ENSMUSG00000024908 ENSMUST00000226109 Ppp6r3 protein_coding Interval_135504 chr6 39716712 39717500 + 0 NA intron (ENSMUSG00000002413.15, intron 1 of 17) protein_coding-intron (ENSMUSG00000002413.15, intron 1 of 21) -52027 ENSMUSG00000002413.15 ENSMUSG00000002413 ENSMUST00000169647 Braf protein_coding Interval_163362 chr9 21082863 21083200 + 0 NA intron (ENSMUSG00000111497.1, intron 3 of 16) protein_coding-intron (ENSMUSG00000010205.11, intron 3 of 12) -7443 ENSMUSG00000098907.1 ENSMUSG00000098907 ENSMUST00000183526 Mir7082 miRNA Interval_27787 chr11 70002065 70002270 + 0 NA intron (ENSMUSG00000020888.16, intron 1 of 15) protein_coding-intron (ENSMUSG00000020888.16, intron 1 of 14) 1550 ENSMUSG00000020888.16 ENSMUSG00000020888 ENSMUST00000152732 Dvl2 protein_coding Interval_10155 chr1 166151799 166152449 + 0 NA intron (ENSMUSG00000000544.14, intron 2 of 7) protein_coding-intron (ENSMUSG00000000544.14, intron 2 of 3) 21657 ENSMUSG00000000544.14 ENSMUSG00000000544 ENSMUST00000166860 Gpa33 protein_coding Interval_60938 chr15 78007178 78007798 + 0 NA intron (ENSMUSG00000019146.2, intron 2 of 3) protein_coding-intron (ENSMUSG00000019146.2, intron 2 of 3) -43716 ENSMUSG00000016554.9 ENSMUSG00000016554 ENSMUST00000229713 Eif3d protein_coding Interval_80196 chr18 38173849 38175963 + 0 NA Intergenic Intergenic 28934 ENSMUSG00000051375.15 ENSMUSG00000051375 ENSMUST00000193828 Pcdh1 protein_coding Interval_146040 chr7 43422914 43423500 + 0 NA Intergenic Intergenic -4463 ENSMUSG00000093639.4 ENSMUSG00000093639 ENSMUST00000177375 Lim2 protein_coding Interval_62367 chr15 91191533 91192290 + 0 NA promoter-TSS (ENSMUSG00000055782.9) protein_coding-promoter-TSS (ENSMUSG00000055782.9) -1213 ENSMUSG00000055782.9 ENSMUSG00000055782 ENSMUST00000230461 Abcd2 protein_coding Interval_48961 chr13 106092328 106092623 + 0 NA Intergenic Intergenic 50351 ENSMUSG00000114899.1 ENSMUSG00000114899 ENSMUST00000224697 Gm48214 processed_pseudogene Interval_18691 chr10 89371705 89372101 + 0 NA Intergenic Intergenic 61939 ENSMUSG00000074802.11 ENSMUSG00000074802 ENSMUST00000219073 Gas2l3 protein_coding Interval_116420 chr4 111686626 111687890 + 0 NA Intergenic Intergenic -32805 ENSMUSG00000034401.16 ENSMUSG00000034401 ENSMUST00000132802 Spata6 protein_coding Interval_22707 chr11 13597718 13598467 + 0 NA Intergenic Intergenic -563987 ENSMUSG00000081631.1 ENSMUSG00000081631 ENSMUST00000121451 Gm12005 processed_pseudogene Interval_69387 chr16 92628697 92629231 + 0 NA intron (ENSMUSG00000022952.17, intron 3 of 4) protein_coding-intron (ENSMUSG00000022952.17, intron 6 of 7) 16150 ENSMUSG00000097139.3 ENSMUSG00000097139 ENSMUST00000180989 Gm26626 antisense Interval_97784 chr2 144034141 144034418 + 0 NA intron (ENSMUSG00000037307.11, intron 1 of 2) protein_coding-intron (ENSMUSG00000037307.11, intron 1 of 3) 1177 ENSMUSG00000037307.11 ENSMUSG00000037307 ENSMUST00000110032 Banf2 protein_coding Interval_4983 chr1 83517031 83517700 + 0 NA Intergenic Intergenic -89967 ENSMUSG00000104219.1 ENSMUSG00000104219 ENSMUST00000195202 Gm37989 TEC Interval_11646 chr1 183763342 183763687 + 0 NA intron (ENSMUSG00000103305.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000103305.1, intron 1 of 2) 14537 ENSMUSG00000103305.1 ENSMUSG00000103305 ENSMUST00000193310 Gm34068 lincRNA Interval_174193 chrX 139323193 139324045 + 0 NA intron (ENSMUSG00000086807.8, intron 4 of 19) processed_transcript-intron (ENSMUSG00000086807.8, intron 4 of 19) -10064 ENSMUSG00000051257.3 ENSMUSG00000051257 ENSMUST00000054534 Trap1a protein_coding Interval_155844 chr8 40146091 40146267 + 0 NA Intergenic Intergenic 129465 ENSMUSG00000109815.1 ENSMUSG00000109815 ENSMUST00000209880 Gm7082 processed_pseudogene Interval_174254 chrX 142144435 142144928 + 0 NA intron (ENSMUSG00000042282.4, intron 6 of 19) protein_coding-intron (ENSMUSG00000042282.4, intron 6 of 19) 52250 ENSMUSG00000042282.4 ENSMUSG00000042282 ENSMUST00000042530 Gucy2f protein_coding Interval_76533 chr17 80815510 80816133 + 0 NA Intergenic Intergenic -80972 ENSMUSG00000112121.1 ENSMUSG00000112121 ENSMUST00000220067 C230072F16Rik lincRNA Interval_158493 chr8 84041944 84042697 + 0 NA TTS (ENSMUSG00000045232.4) protein_coding-TTS (ENSMUSG00000045232.4) 220 ENSMUSG00000005465.9 ENSMUSG00000005465 ENSMUST00000210790 Il27ra protein_coding Interval_8711 chr1 149743232 149743485 + 0 NA Intergenic Intergenic -8500 ENSMUSG00000084532.1 ENSMUSG00000084532 ENSMUST00000122583 n-R5s218 rRNA Interval_146639 chr7 48994811 48995859 + 0 NA intron (ENSMUSG00000052512.17, intron 2 of 39) protein_coding-intron (ENSMUSG00000052512.17, intron 2 of 39) -55217 ENSMUSG00000109507.1 ENSMUSG00000109507 ENSMUST00000208249 Gm18559 processed_pseudogene Interval_108133 chr3 121777923 121778620 + 0 NA intron (ENSMUSG00000028127.10, intron 8 of 21) protein_coding-intron (ENSMUSG00000028127.10, intron 9 of 22) 10301 ENSMUSG00000105597.1 ENSMUSG00000105597 ENSMUST00000198169 4633401B06Rik TEC Interval_157566 chr8 71461303 71461732 + 0 NA exon (ENSMUSG00000007950.9, exon 2 of 5) protein_coding-exon (ENSMUSG00000007950.9, exon 2 of 5) 2105 ENSMUSG00000007950.9 ENSMUSG00000007950 ENSMUST00000212503 Abhd8 protein_coding Interval_131027 chr5 134648510 134649216 + 0 NA Intergenic Intergenic -9373 ENSMUSG00000040731.13 ENSMUSG00000040731 ENSMUST00000201263 Eif4h protein_coding Interval_18719 chr10 89668771 89669459 + 0 NA exon (ENSMUSG00000069539.11, exon 3 of 3) protein_coding-exon (ENSMUSG00000069539.11, exon 3 of 3) 17153 ENSMUSG00000069539.11 ENSMUSG00000069539 ENSMUST00000174429 Scyl2 protein_coding Interval_52714 chr14 48904705 48905103 + 0 NA Intergenic Intergenic -23070 ENSMUSG00000115398.1 ENSMUSG00000115398 ENSMUST00000226616 Gm534 processed_transcript Interval_172631 chrX 38574720 38576762 + 0 NA intron (ENSMUSG00000031095.15, intron 1 of 22) protein_coding-intron (ENSMUSG00000031095.15, intron 1 of 22) -11079 ENSMUSG00000031095.15 ENSMUSG00000031095 ENSMUST00000050083 Cul4b protein_coding Interval_22030 chr11 5877718 5878687 + 0 NA promoter-TSS (ENSMUSG00000020471.11) protein_coding-promoter-TSS (ENSMUSG00000020471.11) -540 ENSMUSG00000020471.11 ENSMUSG00000020471 ENSMUST00000134957 Pold2 protein_coding Interval_151995 chr7 128022844 128023378 + 0 NA Intergenic Intergenic -5891 ENSMUSG00000108696.1 ENSMUSG00000108696 ENSMUST00000206016 Gm5738 processed_pseudogene Interval_56715 chr14 121591707 121591937 + 0 NA TTS (ENSMUSG00000025558.19) protein_coding-TTS (ENSMUSG00000025558.19) 68278 ENSMUSG00000115408.1 ENSMUSG00000115408 ENSMUST00000226518 Gm4529 processed_pseudogene Interval_154527 chr8 18950091 18951544 + 0 NA promoter-TSS (ENSMUSG00000039814.15) protein_coding-promoter-TSS (ENSMUSG00000039814.15) 99 ENSMUSG00000039814.15 ENSMUSG00000039814 ENSMUST00000143913 Xkr5 protein_coding Interval_137713 chr6 81318500 81318675 + 0 NA Intergenic Intergenic 102671 ENSMUSG00000107691.1 ENSMUSG00000107691 ENSMUST00000203247 Gm43901 processed_pseudogene Interval_142147 chr6 137621220 137621904 + 0 NA intron (ENSMUSG00000015766.14, intron 1 of 4) protein_coding-intron (ENSMUSG00000015766.14, intron 1 of 21) -27987 ENSMUSG00000107878.1 ENSMUSG00000107878 ENSMUST00000203153 Gm44106 TEC Interval_150321 chr7 109582283 109582639 + 0 NA intron (ENSMUSG00000031024.13, intron 2 of 2) protein_coding-intron (ENSMUSG00000031024.13, intron 1 of 19) 34292 ENSMUSG00000031024.13 ENSMUSG00000031024 ENSMUST00000208734 Denn2b protein_coding Interval_8390 chr1 138638756 138638992 + 0 NA Intergenic Intergenic -19170 ENSMUSG00000026393.10 ENSMUSG00000026393 ENSMUST00000191549 Nek7 protein_coding Interval_142452 chr6 142413534 142414935 + 0 NA promoter-TSS (ENSMUSG00000071112.12) protein_coding-promoter-TSS (ENSMUSG00000071112.12) 793 ENSMUSG00000071112.12 ENSMUSG00000071112 ENSMUST00000123209 Spx protein_coding Interval_30072 chr11 88998724 88999973 + 0 NA promoter-TSS (ENSMUSG00000000275.16) protein_coding-promoter-TSS (ENSMUSG00000000275.16) -28 ENSMUSG00000000275.16 ENSMUSG00000000275 ENSMUST00000000284 Trim25 protein_coding Interval_123693 chr5 34566166 34566439 + 0 NA Intergenic Intergenic -7849 ENSMUSG00000099082.1 ENSMUSG00000099082 ENSMUST00000184791 Mir7036b miRNA Interval_110357 chr3 157388196 157388433 + 0 NA Intergenic Intergenic 10054 ENSMUSG00000096848.1 ENSMUSG00000096848 ENSMUST00000180026 Gm23379 snRNA Interval_113026 chr4 47024003 47024252 + 0 NA intron (ENSMUSG00000066191.12, intron 13 of 15) protein_coding-intron (ENSMUSG00000066191.12, intron 12 of 14) -13346 ENSMUSG00000048824.7 ENSMUSG00000048824 ENSMUST00000135777 Gm568 lincRNA Interval_36729 chr12 52632877 52633120 + 0 NA Intergenic Intergenic 25328 ENSMUSG00000112412.1 ENSMUSG00000112412 ENSMUST00000218346 Gm35239 lincRNA Interval_50923 chr14 20779895 20780152 + 0 NA intron (ENSMUSG00000021820.18, intron 2 of 21) protein_coding-intron (ENSMUSG00000021820.18, intron 2 of 20) 13943 ENSMUSG00000021820.18 ENSMUSG00000021820 ENSMUST00000225635 Camk2g protein_coding Interval_2457 chr1 39503106 39503569 + 0 NA Intergenic Intergenic -16196 ENSMUSG00000104827.1 ENSMUSG00000104827 ENSMUST00000197298 Gm24826 snoRNA Interval_48899 chr13 104556371 104556903 + 0 NA Intergenic Intergenic -128294 ENSMUSG00000084860.1 ENSMUSG00000084860 ENSMUST00000131215 2610204G07Rik antisense Interval_3723 chr1 62294654 62295623 + 0 NA intron (ENSMUSG00000052062.14, intron 16 of 21) protein_coding-intron (ENSMUSG00000052062.14, intron 15 of 21) 47985 ENSMUSG00000102359.1 ENSMUSG00000102359 ENSMUST00000195466 Gm38351 TEC Interval_18584 chr10 88178604 88178947 + 0 NA TTS (ENSMUSG00000035351.16) protein_coding-TTS (ENSMUSG00000035351.16) -13702 ENSMUSG00000088843.1 ENSMUSG00000088843 ENSMUST00000158218 Gm26357 snRNA Interval_13408 chr10 17906247 17906961 + 0 NA intron (ENSMUSG00000039879.9, intron 2 of 3) protein_coding-intron (ENSMUSG00000039879.9, intron 3 of 3) 8598 ENSMUSG00000039879.9 ENSMUSG00000039879 ENSMUST00000218268 Heca protein_coding Interval_72733 chr17 31811133 31811877 + 0 NA Intergenic Intergenic 21979 ENSMUSG00000117355.1 ENSMUSG00000117355 ENSMUST00000234824 Gm49999 lincRNA Interval_149418 chr7 98347945 98349348 + 0 NA Intergenic Intergenic 11541 ENSMUSG00000049580.12 ENSMUSG00000049580 ENSMUST00000206770 Tsku protein_coding Interval_35290 chr12 19926416 19926675 + 0 NA Intergenic Intergenic 24377 ENSMUSG00000113122.1 ENSMUSG00000113122 ENSMUST00000221262 Gm48644 unprocessed_pseudogene Interval_65908 chr16 30160470 30160826 + 0 NA Intergenic Intergenic -18703 ENSMUSG00000084444.1 ENSMUSG00000084444 ENSMUST00000122495 n-R5s32 rRNA Interval_125317 chr5 66167208 66167626 + 0 NA intron (ENSMUSG00000107014.1, intron 2 of 2) antisense-intron (ENSMUSG00000097092.2, intron 4 of 5) -2755 ENSMUSG00000093258.1 ENSMUSG00000093258 ENSMUST00000175517 Gm22929 snRNA Interval_11603 chr1 183228757 183229448 + 0 NA Intergenic Intergenic -7612 ENSMUSG00000030768.12 ENSMUSG00000030768 ENSMUST00000194033 Disp1 protein_coding Interval_135591 chr6 41108697 41109054 + 0 NA Intergenic Intergenic 1831 ENSMUSG00000102903.1 ENSMUSG00000102903 ENSMUST00000194354 Trbv11 TR_V_pseudogene Interval_21593 chr10 130371577 130371775 + 0 NA Intergenic Intergenic 22656 ENSMUSG00000070601.5 ENSMUSG00000070601 ENSMUST00000233031 Vmn2r84 protein_coding Interval_116329 chr4 109885524 109885945 + 0 NA intron (ENSMUSG00000010517.7, intron 4 of 5) protein_coding-intron (ENSMUSG00000010517.7, intron 14 of 18) 44949 ENSMUSG00000010517.7 ENSMUSG00000010517 ENSMUST00000155204 Faf1 protein_coding Interval_155941 chr8 41164391 41164634 + 0 NA Intergenic Intergenic 50641 ENSMUSG00000031594.9 ENSMUSG00000031594 ENSMUST00000134510 Fgl1 protein_coding Interval_113426 chr4 54944869 54949746 + 0 NA promoter-TSS (ENSMUSG00000060206.11) protein_coding-promoter-TSS (ENSMUSG00000060206.11) 2259 ENSMUSG00000060206.11 ENSMUSG00000060206 ENSMUST00000079605 Zfp462 protein_coding Interval_61674 chr15 83329146 83330310 + 0 NA TTS (ENSMUSG00000054277.8) protein_coding-TTS (ENSMUSG00000054277.8) 3539 ENSMUSG00000054277.8 ENSMUSG00000054277 ENSMUST00000227511 Arfgap3 protein_coding Interval_109995 chr3 152377288 152377622 + 0 NA intron (ENSMUSG00000025437.15, intron 15 of 23) protein_coding-intron (ENSMUSG00000025437.15, intron 15 of 23) 5713 ENSMUSG00000104822.1 ENSMUSG00000104822 ENSMUST00000198647 Gm42967 TEC Interval_38954 chr12 84069087 84070413 + 0 NA exon (ENSMUSG00000042540.12, exon 1 of 3) protein_coding-exon (ENSMUSG00000042540.12, exon 1 of 3) 425 ENSMUSG00000042540.12 ENSMUSG00000042540 ENSMUST00000072505 Acot5 protein_coding Interval_160531 chr8 110439909 110440768 + 0 NA intron (ENSMUSG00000059854.8, intron 19 of 25) protein_coding-intron (ENSMUSG00000059854.8, intron 19 of 86) -18871 ENSMUSG00000064393.1 ENSMUSG00000064393 ENSMUST00000082459 Gm23627 snRNA Interval_105992 chr3 90490525 90491561 + 0 NA promoter-TSS (ENSMUSG00000001018.15) protein_coding-promoter-TSS (ENSMUSG00000001018.15) -50 ENSMUSG00000001018.15 ENSMUSG00000001018 ENSMUST00000107351 Snapin protein_coding Interval_48471 chr13 99279542 99279826 + 0 NA Intergenic Intergenic 65021 ENSMUSG00000021650.7 ENSMUSG00000021650 ENSMUST00000022153 Ptcd2 protein_coding Interval_4616 chr1 75458208 75458872 + 0 NA intron (ENSMUSG00000033007.15, intron 1 of 8) protein_coding-intron (ENSMUSG00000033007.15, intron 1 of 9) 8104 ENSMUSG00000033007.15 ENSMUSG00000033007 ENSMUST00000037708 Asic4 protein_coding Interval_139019 chr6 94224926 94226603 + 0 NA intron (ENSMUSG00000045095.16, intron 2 of 2) protein_coding-intron (ENSMUSG00000045095.16, intron 1 of 21) 98270 ENSMUSG00000107545.1 ENSMUSG00000107545 ENSMUST00000204466 Gm44307 processed_pseudogene Interval_80342 chr18 39587186 39587684 + 0 NA Intergenic Intergenic -48971 ENSMUSG00000118117.1 ENSMUSG00000118117 ENSMUST00000237284 Gm30961 lincRNA Interval_22880 chr11 17051018 17053042 + 0 NA exon (ENSMUSG00000044629.5, exon 1 of 3) protein_coding-exon (ENSMUSG00000044629.5, exon 1 of 3) 227 ENSMUSG00000044629.5 ENSMUSG00000044629 ENSMUST00000058159 Cnrip1 protein_coding Interval_10141 chr1 166045272 166045852 + 0 NA Intergenic Intergenic -1871 ENSMUSG00000102890.1 ENSMUSG00000102890 ENSMUST00000195801 Gm7626 processed_pseudogene Interval_107734 chr3 112236252 112236918 + 0 NA Intergenic Intergenic -33570 ENSMUSG00000105507.1 ENSMUSG00000105507 ENSMUST00000197162 Gm43853 processed_pseudogene Interval_124019 chr5 37298543 37298782 + 0 NA promoter-TSS (ENSMUSG00000107307.1) processed_pseudogene-promoter-TSS (ENSMUSG00000107307.1) -882 ENSMUSG00000107307.1 ENSMUSG00000107307 ENSMUST00000202004 Gm42935 processed_pseudogene Interval_167509 chr9 70159299 70160566 + 0 NA Intergenic Intergenic -10996 ENSMUSG00000077660.1 ENSMUSG00000077660 ENSMUST00000104472 Gm24257 snoRNA Interval_116970 chr4 118542744 118544545 + 0 NA promoter-TSS (ENSMUSG00000050854.9) protein_coding-promoter-TSS (ENSMUSG00000050854.9) -355 ENSMUSG00000050854.9 ENSMUSG00000050854 ENSMUST00000154025 Tmem125 protein_coding Interval_16672 chr10 66954080 66954295 + 0 NA Intergenic Intergenic 33885 ENSMUSG00000097921.2 ENSMUSG00000097921 ENSMUST00000181018 Gm26576 lincRNA Interval_59232 chr15 49240005 49240211 + 0 NA Intergenic Intergenic 45771 ENSMUSG00000115775.1 ENSMUSG00000115775 ENSMUST00000228245 Gm41318 lincRNA Interval_174829 chrX 168664081 168664351 + 0 NA exon (ENSMUSG00000031358.17, exon 9 of 13) protein_coding-exon (ENSMUSG00000031358.17, exon 9 of 13) -5198 ENSMUSG00000031358.17 ENSMUSG00000031358 ENSMUST00000129860 Msl3 protein_coding Interval_157718 chr8 72500831 72501273 + 0 NA intron (ENSMUSG00000045248.6, intron 1 of 2) protein_coding-intron (ENSMUSG00000045248.6, intron 1 of 2) 8108 ENSMUSG00000097000.2 ENSMUSG00000097000 ENSMUST00000212699 Gm17435 antisense Interval_162921 chr9 13230687 13232002 + 0 NA Intergenic Intergenic 14485 ENSMUSG00000079083.3 ENSMUSG00000079083 ENSMUST00000110582 Jrkl protein_coding Interval_86121 chr19 36875983 36876293 + 0 NA intron (ENSMUSG00000024811.11, intron 4 of 7) protein_coding-intron (ENSMUSG00000024811.11, intron 17 of 26) 26767 ENSMUSG00000024811.11 ENSMUSG00000024811 ENSMUST00000168654 Tnks2 protein_coding Interval_39355 chr12 86882257 86885131 + 0 NA exon (ENSMUSG00000034168.7, exon 1 of 1) protein_coding-exon (ENSMUSG00000034168.7, exon 1 of 1) 1104 ENSMUSG00000034168.7 ENSMUSG00000034168 ENSMUST00000038422 Irf2bpl protein_coding Interval_110673 chr4 6171828 6172271 + 0 NA Intergenic Intergenic -19049 ENSMUSG00000028243.5 ENSMUSG00000028243 ENSMUST00000029907 Ubxn2b protein_coding Interval_64477 chr16 11808772 11810041 + 0 NA intron (ENSMUSG00000065979.12, intron 3 of 3) protein_coding-intron (ENSMUSG00000065979.12, intron 3 of 3) 30977 ENSMUSG00000115936.1 ENSMUSG00000115936 ENSMUST00000229695 4833415N18Rik lincRNA Interval_163945 chr9 29463147 29463958 + 0 NA intron (ENSMUSG00000059974.10, intron 1 of 2) protein_coding-intron (ENSMUSG00000059974.10, intron 1 of 7) 128958 ENSMUSG00000085638.1 ENSMUSG00000085638 ENSMUST00000141752 Gm15521 sense_intronic Interval_135738 chr6 46103648 46104824 + 0 NA intron (ENSMUSG00000039419.17, intron 8 of 23) protein_coding-intron (ENSMUSG00000039419.17, intron 8 of 23) 28057 ENSMUSG00000108189.1 ENSMUSG00000108189 ENSMUST00000204727 Gm43887 TEC Interval_110364 chr3 157452177 157453005 + 0 NA Intergenic Intergenic 42574 ENSMUSG00000104555.1 ENSMUSG00000104555 ENSMUST00000197739 Gm5983 processed_pseudogene Interval_57879 chr15 24411680 24412024 + 0 NA Intergenic Intergenic -36177 ENSMUSG00000115198.1 ENSMUSG00000115198 ENSMUST00000228438 Gm49729 lincRNA Interval_103068 chr3 34888699 34888969 + 0 NA Intergenic Intergenic 33817 ENSMUSG00000098862.1 ENSMUSG00000098862 ENSMUST00000183357 Mir6378 miRNA Interval_155966 chr8 41318766 41319181 + 0 NA intron (ENSMUSG00000031592.10, intron 30 of 38) protein_coding-intron (ENSMUSG00000031592.10, intron 29 of 37) 55800 ENSMUSG00000031591.14 ENSMUSG00000031591 ENSMUST00000143057 Asah1 protein_coding Interval_134048 chr6 18063120 18063694 + 0 NA intron (ENSMUSG00000010796.11, intron 9 of 10) protein_coding-intron (ENSMUSG00000010796.11, intron 10 of 12) 11700 ENSMUSG00000010796.11 ENSMUSG00000010796 ENSMUST00000131614 Asz1 protein_coding Interval_140756 chr6 121086978 121087903 + 0 NA intron (ENSMUSG00000051586.17, intron 1 of 14) protein_coding-intron (ENSMUSG00000051586.17, intron 1 of 14) -5831 ENSMUSG00000051586.17 ENSMUSG00000051586 ENSMUST00000207993 Mical3 protein_coding Interval_165122 chr9 44678437 44678764 + 0 NA intron (ENSMUSG00000032098.13, intron 1 of 13) protein_coding-intron (ENSMUSG00000032098.13, intron 1 of 14) -4696 ENSMUSG00000032098.13 ENSMUSG00000032098 ENSMUST00000150822 Treh protein_coding Interval_83789 chr19 4723744 4724295 + 0 NA intron (ENSMUSG00000067889.6, intron 1 of 1) protein_coding-intron (ENSMUSG00000067889.6, intron 2 of 36) 2940 ENSMUSG00000067889.6 ENSMUSG00000067889 ENSMUST00000238162 Sptbn2 protein_coding Interval_143570 chr7 12890851 12891223 + 0 NA exon (ENSMUSG00000060397.6, exon 3 of 3) protein_coding-exon (ENSMUSG00000060397.6, exon 3 of 3) -6804 ENSMUSG00000054715.11 ENSMUSG00000054715 ENSMUST00000119989 Zscan22 protein_coding Interval_32174 chr11 105934628 105935531 + 0 NA TTS (ENSMUSG00000019590.16) protein_coding-TTS (ENSMUSG00000019590.16) -8625 ENSMUSG00000103469.1 ENSMUSG00000103469 ENSMUST00000195385 Gm9910 TEC Interval_91786 chr2 49559327 49560551 + 0 NA Intergenic Intergenic 31064 ENSMUSG00000069495.12 ENSMUSG00000069495 ENSMUST00000152485 Epc2 protein_coding Interval_152836 chr7 138583932 138584764 + 0 NA Intergenic Intergenic 30106 ENSMUSG00000110037.1 ENSMUSG00000110037 ENSMUST00000209503 4930543N07Rik lincRNA Interval_139077 chr6 94805445 94806004 + 0 NA Intergenic Intergenic 6292 ENSMUSG00000107716.1 ENSMUSG00000107716 ENSMUST00000203986 Gm43997 TEC Interval_148566 chr7 82719433 82719928 + 0 NA intron (ENSMUSG00000038563.14, intron 15 of 19) protein_coding-intron (ENSMUSG00000038563.14, intron 15 of 19) 4088 ENSMUSG00000108984.1 ENSMUSG00000108984 ENSMUST00000208664 Gm44916 TEC Interval_44613 chr13 46713391 46713891 + 0 NA exon (ENSMUSG00000021374.10, exon 3 of 22) protein_coding-exon (ENSMUSG00000021374.10, exon 3 of 22) -5824 ENSMUSG00000021374.10 ENSMUSG00000021374 ENSMUST00000183299 Nup153 protein_coding Interval_119176 chr4 136003653 136003923 + 0 NA exon (ENSMUSG00000028668.5, exon 11 of 11) protein_coding-exon (ENSMUSG00000028668.5, exon 11 of 11) 222 ENSMUSG00000085714.1 ENSMUSG00000085714 ENSMUST00000142289 Gm13008 antisense Interval_160446 chr8 109551499 109552123 + 0 NA intron (ENSMUSG00000037993.8, intron 1 of 1) protein_coding-intron (ENSMUSG00000037993.8, intron 24 of 26) 313 ENSMUSG00000037993.8 ENSMUSG00000037993 ENSMUST00000212667 Dhx38 protein_coding Interval_128903 chr5 115975692 115975891 + 0 NA intron (ENSMUSG00000029516.19, intron 18 of 37) protein_coding-intron (ENSMUSG00000029516.19, intron 27 of 46) -33525 ENSMUSG00000085376.1 ENSMUSG00000085376 ENSMUST00000127049 Gm14508 antisense Interval_108332 chr3 124226016 124226312 + 0 NA Intergenic Intergenic -20073 ENSMUSG00000104531.1 ENSMUSG00000104531 ENSMUST00000196150 Gm43731 lincRNA Interval_101296 chr2 180225399 180226268 + 0 NA promoter-TSS (ENSMUSG00000015647.9) protein_coding-promoter-TSS (ENSMUSG00000015647.9) -31546 ENSMUSG00000039001.12 ENSMUSG00000039001 ENSMUST00000145043 Rps21 protein_coding Interval_47929 chr13 94451143 94451459 + 0 NA intron (ENSMUSG00000021686.6, intron 13 of 26) protein_coding-intron (ENSMUSG00000021686.6, intron 13 of 26) -21562 ENSMUSG00000021686.6 ENSMUSG00000021686 ENSMUST00000220505 Ap3b1 protein_coding Interval_65707 chr16 25775257 25775508 + 0 NA intron (ENSMUSG00000022510.14, intron 3 of 13) protein_coding-intron (ENSMUSG00000022510.14, intron 3 of 12) 48686 ENSMUSG00000098103.1 ENSMUSG00000098103 ENSMUST00000182783 Gm27005 processed_pseudogene Interval_62815 chr15 97172786 97173791 + 0 NA Intergenic Intergenic -6044 ENSMUSG00000116295.1 ENSMUSG00000116295 ENSMUST00000229491 Gm32885 lincRNA Interval_68743 chr16 85415184 85415749 + 0 NA Intergenic Intergenic 134951 ENSMUSG00000041134.15 ENSMUSG00000041134 ENSMUST00000162621 Cyyr1 protein_coding Interval_91376 chr2 38375835 38376450 + 0 NA Intergenic Intergenic -12162 ENSMUSG00000087539.1 ENSMUSG00000087539 ENSMUST00000137134 Gm13584 antisense Interval_3859 chr1 63803774 63804773 + 0 NA Intergenic Intergenic -35006 ENSMUSG00000025961.1 ENSMUSG00000025961 ENSMUST00000027102 4933402D24Rik protein_coding Interval_4230 chr1 71811602 71812912 + 0 NA Intergenic Intergenic 34353 ENSMUSG00000102689.1 ENSMUSG00000102689 ENSMUST00000194017 Gm37217 TEC Interval_120056 chr4 141569712 141570506 + 0 NA Intergenic Intergenic 23920 ENSMUSG00000048406.5 ENSMUSG00000048406 ENSMUST00000049927 B330016D10Rik pseudogene Interval_145716 chr7 37647852 37648851 + 0 NA intron (ENSMUSG00000043456.17, intron 3 of 3) protein_coding-intron (ENSMUSG00000043456.17, intron 3 of 5) 14287 ENSMUSG00000108572.1 ENSMUSG00000108572 ENSMUST00000206063 Gm44883 TEC Interval_113754 chr4 58253257 58253715 + 0 NA Intergenic Intergenic -32476 ENSMUSG00000057280.15 ENSMUSG00000057280 ENSMUST00000135879 Musk protein_coding Interval_9690 chr1 161062119 161062373 + 0 NA TTS (ENSMUSG00000026709.10) protein_coding-TTS (ENSMUSG00000026709.10) 8396 ENSMUSG00000026709.10 ENSMUSG00000026709 ENSMUST00000159922 Dars2 protein_coding Interval_58786 chr15 38062193 38063200 + 0 NA intron (ENSMUSG00000037487.7, intron 1 of 58) protein_coding-intron (ENSMUSG00000037487.7, intron 1 of 58) 4411 ENSMUSG00000065852.1 ENSMUSG00000065852 ENSMUST00000083918 Gm22353 snoRNA Interval_126577 chr5 90357878 90358206 + 0 NA intron (ENSMUSG00000055204.15, intron 1 of 26) protein_coding-intron (ENSMUSG00000055204.15, intron 1 of 33) 8143 ENSMUSG00000055204.15 ENSMUSG00000055204 ENSMUST00000202226 Ankrd17 protein_coding Interval_115637 chr4 101527232 101527436 + 0 NA intron (ENSMUSG00000028528.17, intron 1 of 2) protein_coding-intron (ENSMUSG00000028528.17, intron 1 of 18) -27761 ENSMUSG00000089446.1 ENSMUSG00000089446 ENSMUST00000158821 Gm22533 misc_RNA Interval_124270 chr5 43227449 43227808 + 0 NA intron (ENSMUSG00000085720.8, intron 1 of 5) antisense-intron (ENSMUSG00000085720.8, intron 1 of 7) 7357 ENSMUSG00000085720.8 ENSMUSG00000085720 ENSMUST00000140650 Gm7854 antisense Interval_164768 chr9 41563232 41564209 + 0 NA intron (ENSMUSG00000074415.14, intron 4 of 8) processed_transcript-intron (ENSMUSG00000074415.14, intron 3 of 3) -4461 ENSMUSG00000111854.1 ENSMUSG00000111854 ENSMUST00000213560 Gm48740 lincRNA Interval_163319 chr9 20835484 20836564 + 0 NA Intergenic Intergenic -3504 ENSMUSG00000118527.1 ENSMUSG00000118527 ENSMUST00000238827 AC170598.1 unprocessed_pseudogene Interval_29707 chr11 86256990 86258325 + 0 NA promoter-TSS (ENSMUSG00000018068.13) protein_coding-promoter-TSS (ENSMUSG00000018068.13) -25481 ENSMUSG00000018068.13 ENSMUSG00000018068 ENSMUST00000141756 Ints2 protein_coding Interval_103806 chr3 53112849 53114007 + 0 NA promoter-TSS (ENSMUSG00000104968.1) antisense-promoter-TSS (ENSMUSG00000104968.1) -17 ENSMUSG00000104968.1 ENSMUSG00000104968 ENSMUST00000196732 Gm43803 antisense Interval_25845 chr11 52104635 52104876 + 0 NA intron (ENSMUSG00000020349.4, intron 1 of 6) protein_coding-intron (ENSMUSG00000020349.4, intron 1 of 6) -5602 ENSMUSG00000093006.2 ENSMUSG00000093006 ENSMUST00000175265 Gm24157 miRNA Interval_97503 chr2 137977960 137978286 + 0 NA Intergenic Intergenic -101292 ENSMUSG00000086214.1 ENSMUSG00000086214 ENSMUST00000134795 Gm14062 lincRNA Interval_169047 chr9 91138203 91138628 + 0 NA Intergenic Intergenic -7897 ENSMUSG00000103938.1 ENSMUSG00000103938 ENSMUST00000195491 Gm36960 TEC Interval_25993 chr11 53365793 53366218 + 0 NA intron (ENSMUSG00000049470.13, intron 1 of 20) protein_coding-intron (ENSMUSG00000049470.13, intron 1 of 20) -20328 ENSMUSG00000082263.1 ENSMUSG00000082263 ENSMUST00000122382 Gm11188 processed_pseudogene Interval_11476 chr1 182094385 182095716 + 0 NA Intergenic Intergenic 23647 ENSMUSG00000103379.1 ENSMUSG00000103379 ENSMUST00000193768 Gm37177 processed_pseudogene Interval_164469 chr9 37261133 37261311 + 0 NA Intergenic Intergenic 3437 ENSMUSG00000111439.1 ENSMUSG00000111439 ENSMUST00000213982 Gm47633 lincRNA Interval_146526 chr7 46639178 46640315 + 0 NA promoter-TSS (ENSMUSG00000030839.12) protein_coding-promoter-TSS (ENSMUSG00000030839.12) 58 ENSMUSG00000030839.12 ENSMUSG00000030839 ENSMUST00000137988 Sergef protein_coding Interval_58550 chr15 36010269 36010552 + 0 NA intron (ENSMUSG00000037627.16, intron 5 of 6) protein_coding-intron (ENSMUSG00000037627.16, intron 26 of 27) -18488 ENSMUSG00000088786.1 ENSMUSG00000088786 ENSMUST00000158161 Gm25372 misc_RNA Interval_27447 chr11 67860849 67861874 + 0 NA intron (ENSMUSG00000020905.11, intron 2 of 2) protein_coding-intron (ENSMUSG00000020905.11, intron 14 of 14) 59848 ENSMUSG00000020905.11 ENSMUSG00000020905 ENSMUST00000152120 Usp43 protein_coding Interval_153864 chr8 10175990 10177004 + 0 NA intron (ENSMUSG00000039057.11, intron 1 of 16) protein_coding-intron (ENSMUSG00000039057.11, intron 1 of 34) -72791 ENSMUSG00000039057.11 ENSMUSG00000039057 ENSMUST00000042103 Myo16 protein_coding Interval_52384 chr14 45505598 45505784 + 0 NA intron (ENSMUSG00000037712.16, intron 2 of 5) protein_coding-intron (ENSMUSG00000037712.16, intron 2 of 14) -13606 ENSMUSG00000115275.1 ENSMUSG00000115275 ENSMUST00000228572 9630050E16Rik TEC Interval_147488 chr7 67692908 67694807 + 0 NA intron (ENSMUSG00000030555.16, intron 7 of 11) protein_coding-intron (ENSMUSG00000030555.16, intron 7 of 11) -12554 ENSMUSG00000109115.1 ENSMUSG00000109115 ENSMUST00000207774 Gm44669 TEC Interval_29218 chr11 81620125 81621048 + 0 NA intron (ENSMUSG00000020704.13, intron 1 of 9) protein_coding-intron (ENSMUSG00000020704.13, intron 1 of 9) 33225 ENSMUSG00000087534.1 ENSMUSG00000087534 ENSMUST00000156193 Gm11418 antisense Interval_138927 chr6 93593918 93594998 + 0 NA Intergenic Intergenic 55767 ENSMUSG00000107739.1 ENSMUSG00000107739 ENSMUST00000203479 Gm7812 processed_pseudogene Interval_125059 chr5 64173078 64173861 + 0 NA TTS (ENSMUSG00000029174.18) protein_coding-TTS (ENSMUSG00000029174.18) 17164 ENSMUSG00000029174.18 ENSMUSG00000029174 ENSMUST00000140960 Tbc1d1 protein_coding Interval_79913 chr18 35873091 35875491 + 0 NA promoter-TSS (ENSMUSG00000118080.1) lincRNA-promoter-TSS (ENSMUSG00000118080.1) -23 ENSMUSG00000118080.1 ENSMUSG00000118080 ENSMUST00000235808 Gm41693 lincRNA Interval_133125 chr5 150029601 150029824 + 0 NA intron (ENSMUSG00000053368.13, intron 1 of 16) protein_coding-intron (ENSMUSG00000053368.13, intron 1 of 17) 7233 ENSMUSG00000107360.1 ENSMUSG00000107360 ENSMUST00000200982 Gm42558 sense_intronic Interval_19729 chr10 108345279 108346558 + 0 NA intron (ENSMUSG00000035873.8, intron 1 of 4) protein_coding-intron (ENSMUSG00000035873.8, intron 2 of 6) 13101 ENSMUSG00000035873.8 ENSMUSG00000035873 ENSMUST00000218332 Pawr protein_coding Interval_91008 chr2 34156598 34157202 + 0 NA Intergenic Intergenic -45456 ENSMUSG00000103413.1 ENSMUSG00000103413 ENSMUST00000147871 Gm38389 lincRNA Interval_30553 chr11 95078120 95078702 + 0 NA Intergenic Intergenic -1614 ENSMUSG00000001507.16 ENSMUSG00000001507 ENSMUST00000145671 Itga3 protein_coding Interval_112589 chr4 43427654 43429213 + 0 NA promoter-TSS (ENSMUSG00000042788.12) protein_coding-promoter-TSS (ENSMUSG00000042788.12) 684 ENSMUSG00000042788.12 ENSMUSG00000042788 ENSMUST00000149676 Fam166b protein_coding Interval_172810 chrX 50560565 50561510 + 0 NA promoter-TSS (ENSMUSG00000085396.7) processed_transcript-promoter-TSS (ENSMUSG00000085396.7) 3846 ENSMUSG00000085396.7 ENSMUSG00000085396 ENSMUST00000148530 Firre processed_transcript Interval_15431 chr10 46374910 46375683 + 0 NA Intergenic Intergenic -2313 ENSMUSG00000094681.1 ENSMUSG00000094681 ENSMUST00000180247 Gm25740 snRNA Interval_123126 chr5 29852357 29852599 + 0 NA Intergenic Intergenic -19171 ENSMUSG00000106551.1 ENSMUSG00000106551 ENSMUST00000198125 Gm1969 processed_pseudogene Interval_60715 chr15 76316829 76317376 + 0 NA intron (ENSMUSG00000022562.15, intron 1 of 1) protein_coding-intron (ENSMUSG00000022562.15, intron 1 of 1) -10363 ENSMUSG00000034259.8 ENSMUSG00000034259 ENSMUST00000167515 Exosc4 protein_coding Interval_128240 chr5 111957488 111959345 + 0 NA Intergenic Intergenic -14181 ENSMUSG00000106060.1 ENSMUSG00000106060 ENSMUST00000197648 Gm42488 lincRNA Interval_5210 chr1 86464781 86465224 + 0 NA Intergenic Intergenic -8657 ENSMUSG00000101328.1 ENSMUSG00000101328 ENSMUST00000163337 Rpl30-ps6 processed_pseudogene Interval_41999 chr13 6292007 6292333 + 0 NA intron (ENSMUSG00000114097.1, intron 1 of 3) lincRNA-intron (ENSMUSG00000114097.1, intron 1 of 3) 2544 ENSMUSG00000114097.1 ENSMUSG00000114097 ENSMUST00000221255 Gm35615 lincRNA Interval_148417 chr7 81134450 81135272 + 0 NA intron (ENSMUSG00000025726.11, intron 8 of 17) protein_coding-intron (ENSMUSG00000025726.11, intron 8 of 17) 20011 ENSMUSG00000025726.11 ENSMUSG00000025726 ENSMUST00000119083 Slc28a1 protein_coding Interval_40018 chr12 100513135 100514379 + 0 NA intron (ENSMUSG00000033530.8, intron 1 of 9) protein_coding-intron (ENSMUSG00000033530.8, intron 1 of 19) -47459 ENSMUSG00000033530.8 ENSMUSG00000033530 ENSMUST00000220614 Ttc7b protein_coding Interval_60847 chr15 77119482 77120293 + 0 NA intron (ENSMUSG00000033565.18, intron 2 of 3) protein_coding-intron (ENSMUSG00000033565.18, intron 3 of 12) -4085 ENSMUSG00000116298.1 ENSMUSG00000116298 ENSMUST00000230697 4833412C15Rik TEC Interval_107983 chr3 118724055 118724341 + 0 NA intron (ENSMUSG00000033308.16, intron 3 of 4) protein_coding-intron (ENSMUSG00000033308.16, intron 3 of 22) -144046 ENSMUSG00000106542.1 ENSMUSG00000106542 ENSMUST00000197510 Gm43410 TEC Interval_93030 chr2 69670159 69670427 + 0 NA exon (ENSMUSG00000075307.3, exon 1 of 6) protein_coding-exon (ENSMUSG00000075307.3, exon 1 of 6) 173 ENSMUSG00000075307.3 ENSMUSG00000075307 ENSMUST00000100050 Klhl41 protein_coding Interval_73502 chr17 38198697 38198972 + 0 NA Intergenic Intergenic -5501 ENSMUSG00000057801.3 ENSMUSG00000057801 ENSMUST00000076245 Olfr135 protein_coding Interval_15517 chr10 50592170 50593336 + 0 NA promoter-TSS (ENSMUSG00000038774.9) protein_coding-promoter-TSS (ENSMUSG00000038774.9) -4063 ENSMUSG00000038774.9 ENSMUSG00000038774 ENSMUST00000217725 Ascc3 protein_coding Interval_41839 chr13 3221537 3222369 + 0 NA Intergenic Intergenic -51324 ENSMUSG00000113271.1 ENSMUSG00000113271 ENSMUST00000222272 Gm40653 lincRNA Interval_147721 chr7 72927462 72927925 + 0 NA Intergenic Intergenic 62460 ENSMUSG00000098035.1 ENSMUSG00000098035 ENSMUST00000182995 Gm5335 processed_pseudogene Interval_35237 chr12 18637522 18638167 + 0 NA Intergenic Intergenic 3181 ENSMUSG00000113541.1 ENSMUSG00000113541 ENSMUST00000220910 Gm48409 processed_pseudogene Interval_158007 chr8 77919549 77919991 + 0 NA Intergenic Intergenic 112235 ENSMUSG00000087761.1 ENSMUSG00000087761 ENSMUST00000157136 Gm23981 snRNA Interval_34428 chr12 4099130 4100156 + 0 NA intron (ENSMUSG00000020657.16, intron 5 of 8) protein_coding-intron (ENSMUSG00000020657.16, intron 5 of 6) 11061 ENSMUSG00000020657.16 ENSMUSG00000020657 ENSMUST00000220273 Dnajc27 protein_coding Interval_12575 chr10 3507920 3508108 + 0 NA Intergenic Intergenic -32274 ENSMUSG00000019762.4 ENSMUSG00000019762 ENSMUST00000141745 Iyd protein_coding Interval_169631 chr9 99557746 99558132 + 0 NA intron (ENSMUSG00000032468.11, intron 1 of 1) protein_coding-intron (ENSMUSG00000032468.11, intron 1 of 21) 10724 ENSMUSG00000032468.11 ENSMUSG00000032468 ENSMUST00000191370 Armc8 protein_coding Interval_80332 chr18 39354434 39354633 + 0 NA intron (ENSMUSG00000036452.18, intron 20 of 21) protein_coding-intron (ENSMUSG00000036452.18, intron 20 of 22) -12569 ENSMUSG00000082287.1 ENSMUSG00000082287 ENSMUST00000118825 Gm15333 processed_pseudogene Interval_14147 chr10 28106229 28107142 + 0 NA intron (ENSMUSG00000019889.10, intron 1 of 2) protein_coding-intron (ENSMUSG00000019889.10, intron 1 of 31) -40495 ENSMUSG00000112432.1 ENSMUSG00000112432 ENSMUST00000218855 Gm18507 processed_pseudogene Interval_24322 chr11 32347346 32349067 + 0 NA intron (ENSMUSG00000040711.8, intron 1 of 13) protein_coding-intron (ENSMUSG00000040711.8, intron 1 of 12) 386 ENSMUSG00000040711.8 ENSMUSG00000040711 ENSMUST00000138771 Sh3pxd2b protein_coding Interval_97423 chr2 136050583 136052162 + 0 NA promoter-TSS (ENSMUSG00000027270.14) protein_coding-promoter-TSS (ENSMUSG00000027270.14) -6880 ENSMUSG00000027270.14 ENSMUSG00000027270 ENSMUST00000123436 Lamp5 protein_coding Interval_99269 chr2 158563692 158564422 + 0 NA Intergenic Intergenic 46533 ENSMUSG00000086496.1 ENSMUSG00000086496 ENSMUST00000155319 Gm14204 processed_transcript Interval_31198 chr11 98845896 98847843 + 0 NA intron (ENSMUSG00000038020.5, intron 6 of 14) protein_coding-intron (ENSMUSG00000038020.5, intron 2 of 3) -3463 ENSMUSG00000038020.5 ENSMUSG00000038020 ENSMUST00000139889 Rapgefl1 protein_coding Interval_91565 chr2 43494719 43495146 + 0 NA Intergenic Intergenic 24466 ENSMUSG00000080994.2 ENSMUSG00000080994 ENSMUST00000119418 Gm13464 processed_pseudogene Interval_30521 chr11 94920021 94920598 + 0 NA TTS (ENSMUSG00000064512.1) snRNA-TTS (ENSMUSG00000064512.1) 600 ENSMUSG00000064512.1 ENSMUSG00000064512 ENSMUST00000082578 Gm22456 snRNA Interval_1521 chr1 24699223 24699890 + 0 NA intron (ENSMUSG00000073725.8, intron 3 of 15) protein_coding-intron (ENSMUSG00000073725.8, intron 3 of 15) 20926 ENSMUSG00000073725.8 ENSMUSG00000073725 ENSMUST00000190195 Lmbrd1 protein_coding Interval_127550 chr5 105145476 105147688 + 0 NA Intergenic Intergenic -7038 ENSMUSG00000079363.7 ENSMUSG00000079363 ENSMUST00000198278 Gbp4 protein_coding Interval_108353 chr3 124993151 124993322 + 0 NA Intergenic Intergenic 50037 ENSMUSG00000098033.2 ENSMUSG00000098033 ENSMUST00000182285 Gm9381 processed_pseudogene Interval_98435 chr2 152331954 152333128 + 0 NA promoter-TSS (ENSMUSG00000027466.15) protein_coding-promoter-TSS (ENSMUSG00000027466.15) -9043 ENSMUSG00000027466.15 ENSMUSG00000027466 ENSMUST00000129590 Rbck1 protein_coding Interval_169939 chr9 103091066 103091283 + 0 NA TTS (ENSMUSG00000032548.14) protein_coding-TTS (ENSMUSG00000032548.14) -5648 ENSMUSG00000110765.1 ENSMUSG00000110765 ENSMUST00000216778 Gm47468 antisense Interval_143189 chr7 4327015 4327245 + 0 NA Intergenic Intergenic -10639 ENSMUSG00000062524.4 ENSMUSG00000062524 ENSMUST00000126417 Ncr1 protein_coding Interval_109263 chr3 138470901 138471184 + 0 NA intron (ENSMUSG00000005813.12, intron 4 of 5) protein_coding-intron (ENSMUSG00000005813.12, intron 7 of 10) 4143 ENSMUSG00000005813.12 ENSMUSG00000005813 ENSMUST00000198492 Metap1 protein_coding Interval_70888 chr17 15638792 15639738 + 0 NA intron (ENSMUSG00000116924.1, intron 3 of 3) lincRNA-intron (ENSMUSG00000116924.1, intron 3 of 3) 7477 ENSMUSG00000116924.1 ENSMUSG00000116924 ENSMUST00000231822 4933401D09Rik lincRNA Interval_39892 chr12 99385615 99387161 + 0 NA intron (ENSMUSG00000033713.12, intron 2 of 5) protein_coding-intron (ENSMUSG00000033713.12, intron 2 of 5) -9140 ENSMUSG00000113610.1 ENSMUSG00000113610 ENSMUST00000223488 Gm47132 TEC Interval_135219 chr6 37617500 37618341 + 0 NA Intergenic Intergenic 69275 ENSMUSG00000107035.1 ENSMUSG00000107035 ENSMUST00000201305 Ybx1-ps2 processed_pseudogene Interval_109488 chr3 142881167 142882754 + 0 NA promoter-TSS (ENSMUSG00000004591.16) protein_coding-promoter-TSS (ENSMUSG00000004591.16) 372 ENSMUSG00000106550.1 ENSMUSG00000106550 ENSMUST00000199962 Gm43646 processed_transcript Interval_170516 chr9 108451918 108453054 + 0 NA promoter-TSS (ENSMUSG00000032609.12) protein_coding-promoter-TSS (ENSMUSG00000032609.12) 7592 ENSMUSG00000032609.12 ENSMUSG00000032609 ENSMUST00000193618 Klhdc8b protein_coding Interval_142175 chr6 137804038 137804874 + 0 NA intron (ENSMUSG00000030225.11, intron 6 of 7) protein_coding-intron (ENSMUSG00000030225.11, intron 6 of 8) -31101 ENSMUSG00000030225.11 ENSMUSG00000030225 ENSMUST00000204723 Dera protein_coding Interval_101969 chr3 13866285 13866568 + 0 NA intron (ENSMUSG00000039717.16, intron 2 of 5) protein_coding-intron (ENSMUSG00000039717.16, intron 2 of 8) 20740 ENSMUSG00000088546.1 ENSMUSG00000088546 ENSMUST00000157921 Gm25981 misc_RNA Interval_138048 chr6 84601195 84601798 + 0 NA Intergenic Intergenic -13816 ENSMUSG00000063415.12 ENSMUSG00000063415 ENSMUST00000204109 Cyp26b1 protein_coding Interval_95569 chr2 112367179 112368519 + 0 NA exon (ENSMUSG00000027131.3, exon 1 of 5) protein_coding-exon (ENSMUSG00000027131.3, exon 1 of 5) 171 ENSMUSG00000027131.3 ENSMUSG00000027131 ENSMUST00000153967 Emc4 protein_coding Interval_146180 chr7 44553107 44554389 + 0 NA promoter-TSS (ENSMUSG00000060601.13) protein_coding-promoter-TSS (ENSMUSG00000060601.13) -40 ENSMUSG00000060601.13 ENSMUSG00000060601 ENSMUST00000136611 Nr1h2 protein_coding Interval_144742 chr7 27953153 27953446 + 0 NA Intergenic Intergenic -3536 ENSMUSG00000074243.4 ENSMUSG00000074243 ENSMUST00000118212 Gm10651 processed_pseudogene Interval_105051 chr3 80336169 80336345 + 0 NA Intergenic Intergenic -1662 ENSMUSG00000102379.1 ENSMUSG00000102379 ENSMUST00000193516 Gm37971 lincRNA Interval_137690 chr6 79407389 79408419 + 0 NA Intergenic Intergenic -133304 ENSMUSG00000107618.1 ENSMUSG00000107618 ENSMUST00000204707 Gm6261 processed_pseudogene Interval_7560 chr1 132222267 132222695 + 0 NA intron (ENSMUSG00000079330.9, intron 1 of 4) protein_coding-intron (ENSMUSG00000079330.9, intron 1 of 3) -5703 ENSMUSG00000079330.9 ENSMUSG00000079330 ENSMUST00000191418 Lemd1 protein_coding Interval_82794 chr18 77097449 77098151 + 0 NA intron (ENSMUSG00000025423.16, intron 2 of 14) protein_coding-intron (ENSMUSG00000025423.16, intron 2 of 12) 32555 ENSMUSG00000025423.16 ENSMUSG00000025423 ENSMUST00000168882 Pias2 protein_coding Interval_132722 chr5 147399658 147400911 + 0 NA exon (ENSMUSG00000042817.15, exon 1 of 24) protein_coding-exon (ENSMUSG00000042817.15, exon 1 of 24) 205 ENSMUSG00000042817.15 ENSMUSG00000042817 ENSMUST00000110549 Flt3 protein_coding Interval_87845 chr19 56440102 56440509 + 0 NA intron (ENSMUSG00000025076.11, intron 5 of 5) protein_coding-intron (ENSMUSG00000025076.11, intron 6 of 6) 14620 ENSMUSG00000025076.11 ENSMUSG00000025076 ENSMUST00000237765 Casp7 protein_coding Interval_27564 chr11 68750942 68751555 + 0 NA intron (ENSMUSG00000020900.15, intron 6 of 42) protein_coding-intron (ENSMUSG00000020900.15, intron 6 of 42) 59094 ENSMUSG00000020900.15 ENSMUSG00000020900 ENSMUST00000139059 Myh10 protein_coding Interval_35857 chr12 31271656 31271902 + 0 NA intron (ENSMUSG00000002900.17, intron 3 of 32) protein_coding-intron (ENSMUSG00000002900.17, intron 3 of 32) 6485 ENSMUSG00000002900.17 ENSMUSG00000002900 ENSMUST00000172134 Lamb1 protein_coding Interval_49754 chr13 114526738 114527605 + 0 NA Intergenic Intergenic -53324 ENSMUSG00000093072.1 ENSMUSG00000093072 ENSMUST00000175331 Gm25950 miRNA Interval_171792 chr9 121215501 121216362 + 0 NA intron (ENSMUSG00000040936.15, intron 17 of 36) protein_coding-intron (ENSMUSG00000040936.15, intron 17 of 33) -26411 ENSMUSG00000084706.1 ENSMUSG00000084706 ENSMUST00000122757 Gm22987 misc_RNA Interval_172335 chrX 13114569 13115301 + 0 NA intron (ENSMUSG00000031010.17, intron 14 of 16) protein_coding-intron (ENSMUSG00000031010.17, intron 13 of 44) -14125 ENSMUSG00000031010.17 ENSMUSG00000031010 ENSMUST00000133997 Usp9x protein_coding Interval_25948 chr11 53019086 53020116 + 0 NA intron (ENSMUSG00000036264.9, intron 4 of 15) protein_coding-intron (ENSMUSG00000036264.9, intron 4 of 15) 100455 ENSMUSG00000087668.1 ENSMUSG00000087668 ENSMUST00000137096 Gm11186 antisense Interval_142697 chr6 145045104 145045428 + 0 NA intron (ENSMUSG00000030268.17, intron 1 of 3) protein_coding-intron (ENSMUSG00000030268.17, intron 2 of 10) -2293 ENSMUSG00000097419.1 ENSMUSG00000097419 ENSMUST00000180763 Gm26666 antisense Interval_77293 chr17 87853556 87853795 + 0 NA Intergenic Intergenic 28602 ENSMUSG00000117466.1 ENSMUSG00000117466 ENSMUST00000234350 Gm50039 lincRNA Interval_443 chr1 5337424 5337681 + 0 NA Intergenic Intergenic 29813 ENSMUSG00000104046.1 ENSMUSG00000104046 ENSMUST00000193241 Gm37567 TEC Interval_55994 chr14 103732580 103734133 + 0 NA Intergenic Intergenic -33914 ENSMUSG00000089707.1 ENSMUSG00000089707 ENSMUST00000160117 Slain1os antisense Interval_142594 chr6 143736533 143736899 + 0 NA Intergenic Intergenic -85428 ENSMUSG00000086887.1 ENSMUSG00000086887 ENSMUST00000150559 1700060C16Rik lincRNA Interval_153327 chr7 143636316 143637356 + 0 NA promoter-TSS (ENSMUSG00000010751.15) protein_coding-promoter-TSS (ENSMUSG00000010751.15) -251 ENSMUSG00000010751.15 ENSMUSG00000010751 ENSMUST00000084396 Tnfrsf22 protein_coding Interval_118862 chr4 134123691 134124376 + 0 NA promoter-TSS (ENSMUSG00000012126.16) protein_coding-promoter-TSS (ENSMUSG00000012126.16) 4704 ENSMUSG00000028843.8 ENSMUSG00000028843 ENSMUST00000136408 Sh3bgrl3 protein_coding Interval_52223 chr14 40842356 40842828 + 0 NA intron (ENSMUSG00000037833.14, intron 4 of 7) protein_coding-intron (ENSMUSG00000037833.14, intron 1 of 4) 50674 ENSMUSG00000037833.14 ENSMUSG00000037833 ENSMUST00000225854 Sh2d4b protein_coding Interval_157110 chr8 65314700 65315044 + 0 NA Intergenic Intergenic -35685 ENSMUSG00000110226.1 ENSMUSG00000110226 ENSMUST00000209702 Gm7624 processed_pseudogene Interval_69359 chr16 92452385 92453025 + 0 NA intron (ENSMUSG00000022951.16, intron 1 of 3) protein_coding-intron (ENSMUSG00000022951.16, intron 1 of 3) -4772 ENSMUSG00000116964.1 ENSMUSG00000116964 ENSMUST00000231968 Gm46555 antisense Interval_132318 chr5 144148199 144148430 + 0 NA exon (ENSMUSG00000038970.7, exon 6 of 14) protein_coding-exon (ENSMUSG00000038970.7, exon 6 of 14) -36542 ENSMUSG00000098039.1 ENSMUSG00000098039 ENSMUST00000182470 Gm26925 processed_pseudogene Interval_53126 chr14 54602819 54604017 + 0 NA intron (ENSMUSG00000022179.5, intron 1 of 6) protein_coding-intron (ENSMUSG00000022179.5, intron 1 of 6) 13367 ENSMUSG00000076128.1 ENSMUSG00000076128 ENSMUST00000102174 Mir686 miRNA Interval_17645 chr10 78440928 78442189 + 0 NA intron (ENSMUSG00000032788.15, intron 9 of 10) protein_coding-intron (ENSMUSG00000032788.15, intron 9 of 10) 3599 ENSMUSG00000098279.1 ENSMUSG00000098279 ENSMUST00000184056 Mir6908 miRNA Interval_69906 chr17 3102082 3103608 + 0 NA TTS (ENSMUSG00000116995.1) transcribed_processed_pseudogene-TTS (ENSMUSG00000116995.1) -1109 ENSMUSG00000116779.1 ENSMUSG00000116779 ENSMUST00000231470 Gm4829 processed_pseudogene Interval_169879 chr9 102699792 102700561 + 0 NA exon (ENSMUSG00000102200.1, exon 1 of 1) TEC-exon (ENSMUSG00000102200.1, exon 1 of 1) 826 ENSMUSG00000102200.1 ENSMUSG00000102200 ENSMUST00000192982 Gm36957 TEC Interval_46923 chr13 73433500 73434350 + 0 NA Intergenic Intergenic -37826 ENSMUSG00000021608.15 ENSMUSG00000021608 ENSMUST00000222881 Lpcat1 protein_coding Interval_134228 chr6 23253619 23254906 + 0 NA TTS (ENSMUSG00000106775.1) TEC-TTS (ENSMUSG00000106775.1) 3129 ENSMUSG00000106775.1 ENSMUSG00000106775 ENSMUST00000202489 C130093G08Rik TEC Interval_91159 chr2 35569901 35570466 + 0 NA intron (ENSMUSG00000026883.17, intron 1 of 16) protein_coding-intron (ENSMUSG00000026883.17, intron 1 of 16) -11698 ENSMUSG00000086555.2 ENSMUSG00000086555 ENSMUST00000134679 Gm13446 processed_transcript Interval_37049 chr12 56977716 56978270 + 0 NA intron (ENSMUSG00000035472.14, intron 1 of 9) protein_coding-intron (ENSMUSG00000035472.14, intron 1 of 9) 182650 ENSMUSG00000035472.14 ENSMUSG00000035472 ENSMUST00000160892 Slc25a21 protein_coding Interval_78818 chr18 20784057 20784294 + 0 NA Intergenic Intergenic -37771 ENSMUSG00000056124.5 ENSMUSG00000056124 ENSMUST00000070080 B4galt6 protein_coding Interval_120936 chr4 151758463 151759330 + 0 NA intron (ENSMUSG00000014592.21, intron 2 of 7) protein_coding-intron (ENSMUSG00000014592.21, intron 3 of 23) 102808 ENSMUSG00000014592.21 ENSMUSG00000014592 ENSMUST00000135780 Camta1 protein_coding Interval_53623 chr14 60212085 60212483 + 0 NA exon (ENSMUSG00000114584.1, exon 1 of 1) TEC-exon (ENSMUSG00000114584.1, exon 1 of 1) 4135 ENSMUSG00000114584.1 ENSMUSG00000114584 ENSMUST00000225931 Gm47694 TEC Interval_158704 chr8 85441063 85442335 + 0 NA Intergenic Intergenic -8885 ENSMUSG00000036934.9 ENSMUSG00000036934 ENSMUST00000210556 4921524J17Rik protein_coding Interval_173415 chrX 92615002 92615467 + 0 NA Intergenic Intergenic -15662 ENSMUSG00000067649.3 ENSMUSG00000067649 ENSMUST00000088137 Mageb18 protein_coding Interval_121248 chr4 154390277 154391192 + 0 NA intron (ENSMUSG00000039410.16, intron 3 of 15) protein_coding-intron (ENSMUSG00000039410.16, intron 3 of 16) 54607 ENSMUSG00000097871.1 ENSMUSG00000097871 ENSMUST00000181143 B230104I21Rik lincRNA Interval_173683 chrX 101922887 101923240 + 0 NA intron (ENSMUSG00000079481.11, intron 1 of 7) protein_coding-intron (ENSMUSG00000079481.11, intron 1 of 7) -10339 ENSMUSG00000087712.1 ENSMUSG00000087712 ENSMUST00000157087 Gm25828 snRNA Interval_110351 chr3 157276170 157276387 + 0 NA intron (ENSMUSG00000040037.13, intron 6 of 6) protein_coding-intron (ENSMUSG00000040037.13, intron 6 of 6) -38947 ENSMUSG00000094982.1 ENSMUSG00000094982 ENSMUST00000177876 Gm23725 snRNA Interval_81922 chr18 65892609 65893419 + 0 NA intron (ENSMUSG00000118170.1, intron 1 of 3) antisense-intron (ENSMUSG00000118170.1, intron 1 of 3) 1741 ENSMUSG00000118170.1 ENSMUSG00000118170 ENSMUST00000237028 Gm30094 antisense Interval_74769 chr17 56427876 56428944 + 0 NA promoter-TSS (ENSMUSG00000013236.17) protein_coding-promoter-TSS (ENSMUSG00000013236.17) 7575 ENSMUSG00000013236.17 ENSMUSG00000013236 ENSMUST00000224193 Ptprs protein_coding Interval_77680 chr17 94097156 94097389 + 0 NA Intergenic Intergenic 34999 ENSMUSG00000117543.1 ENSMUSG00000117543 ENSMUST00000235005 Gm50004 processed_pseudogene Interval_52538 chr14 47373522 47375791 + 0 NA intron (ENSMUSG00000050335.17, intron 1 of 5) protein_coding-intron (ENSMUSG00000050335.17, intron 1 of 5) 740 ENSMUSG00000050335.17 ENSMUSG00000050335 ENSMUST00000146468 Lgals3 protein_coding Interval_20167 chr10 115361957 115362979 + 0 NA promoter-TSS (ENSMUSG00000069520.6) protein_coding-promoter-TSS (ENSMUSG00000069520.6) 25 ENSMUSG00000069520.6 ENSMUSG00000069520 ENSMUST00000219597 Tmem19 protein_coding Interval_154687 chr8 22604998 22605535 + 0 NA Intergenic Intergenic -18777 ENSMUSG00000031535.7 ENSMUSG00000031535 ENSMUST00000033936 Dkk4 protein_coding Interval_9253 chr1 155521032 155522643 + 0 NA exon (ENSMUSG00000073535.5, exon 2 of 2) lincRNA-exon (ENSMUSG00000073535.5, exon 2 of 2) 5306 ENSMUSG00000073535.5 ENSMUSG00000073535 ENSMUST00000194133 Gm5532 lincRNA Interval_133093 chr5 149748808 149749900 + 0 NA intron (ENSMUSG00000051950.10, intron 3 of 4) protein_coding-intron (ENSMUSG00000051950.10, intron 12 of 14) 9822 ENSMUSG00000051950.10 ENSMUSG00000051950 ENSMUST00000201088 B3glct protein_coding Interval_127375 chr5 103569601 103570102 + 0 NA exon (ENSMUSG00000034573.14, exon 35 of 48) protein_coding-exon (ENSMUSG00000034573.14, exon 35 of 48) -32736 ENSMUSG00000088474.1 ENSMUSG00000088474 ENSMUST00000157849 Gm23085 misc_RNA Interval_5727 chr1 91283175 91283421 + 0 NA promoter-TSS (ENSMUSG00000034343.14) protein_coding-promoter-TSS (ENSMUSG00000034343.14) -12747 ENSMUSG00000083064.1 ENSMUSG00000083064 ENSMUST00000117121 Gm7785 processed_pseudogene Interval_169906 chr9 102860013 102860208 + 0 NA intron (ENSMUSG00000032547.12, intron 1 of 1) protein_coding-intron (ENSMUSG00000032547.12, intron 1 of 14) 8275 ENSMUSG00000110877.1 ENSMUSG00000110877 ENSMUST00000214076 Gm47427 TEC Interval_5188 chr1 86358663 86360283 + 0 NA promoter-TSS (ENSMUSG00000026234.12) protein_coding-promoter-TSS (ENSMUSG00000026234.12) -115 ENSMUSG00000073627.7 ENSMUSG00000073627 ENSMUST00000190804 C130036L24Rik processed_transcript Interval_5672 chr1 90811566 90811908 + 0 NA exon (ENSMUSG00000048126.16, exon 7 of 44) protein_coding-exon (ENSMUSG00000048126.16, exon 7 of 44) 27396 ENSMUSG00000103061.1 ENSMUSG00000103061 ENSMUST00000193688 Gm36970 TEC Interval_11001 chr1 177982934 177983929 + 0 NA promoter-TSS (ENSMUSG00000091476.8) protein_coding-promoter-TSS (ENSMUSG00000091476.8) -8005 ENSMUSG00000091476.8 ENSMUSG00000091476 ENSMUST00000239155 Catspere2 protein_coding Interval_149329 chr7 97475333 97475766 + 0 NA Intergenic Intergenic 24226 ENSMUSG00000051727.14 ENSMUSG00000051727 ENSMUST00000206279 Kctd14 protein_coding Interval_25489 chr11 49174688 49174991 + 0 NA TTS (ENSMUSG00000040283.14) protein_coding-TTS (ENSMUSG00000040283.14) 12198 ENSMUSG00000040283.14 ENSMUSG00000040283 ENSMUST00000128462 Btnl9 protein_coding Interval_104091 chr3 58536390 58537284 + 0 NA intron (ENSMUSG00000027810.14, intron 2 of 12) protein_coding-intron (ENSMUSG00000027810.14, intron 2 of 13) 9907 ENSMUSG00000106553.1 ENSMUSG00000106553 ENSMUST00000199552 6720482G16Rik TEC Interval_15655 chr10 53150175 53151570 + 0 NA Intergenic Intergenic -30308 ENSMUSG00000112376.1 ENSMUSG00000112376 ENSMUST00000219795 Gm40649 lincRNA Interval_102653 chr3 28949982 28951124 + 0 NA Intergenic Intergenic 57936 ENSMUSG00000074655.1 ENSMUSG00000074655 ENSMUST00000099170 Gm1527 protein_coding Interval_51626 chr14 30881315 30881864 + 0 NA TTS (ENSMUSG00000042485.7) protein_coding-TTS (ENSMUSG00000042485.7) 2389 ENSMUSG00000042485.7 ENSMUSG00000042485 ENSMUST00000040715 Mustn1 protein_coding Interval_30589 chr11 95284770 95285466 + 0 NA intron (ENSMUSG00000038909.16, intron 3 of 3) protein_coding-intron (ENSMUSG00000038909.16, intron 7 of 13) 23589 ENSMUSG00000020872.4 ENSMUSG00000020872 ENSMUST00000021242 Tac4 protein_coding Interval_123618 chr5 33853032 33853633 + 0 NA intron (ENSMUSG00000057406.16, intron 2 of 20) protein_coding-intron (ENSMUSG00000057406.16, intron 2 of 20) -24883 ENSMUSG00000057406.16 ENSMUSG00000057406 ENSMUST00000201572 Nsd2 protein_coding Interval_168593 chr9 83974928 83975134 + 0 NA intron (ENSMUSG00000032263.14, intron 3 of 10) protein_coding-intron (ENSMUSG00000032263.14, intron 3 of 10) -8024 ENSMUSG00000101077.1 ENSMUSG00000101077 ENSMUST00000185454 Gm29164 processed_pseudogene Interval_148603 chr7 83060089 83061288 + 0 NA Intergenic Intergenic -23693 ENSMUSG00000053528.6 ENSMUSG00000053528 ENSMUST00000208111 A530021J07Rik lincRNA Interval_98679 chr2 154214729 154215687 + 0 NA intron (ENSMUSG00000027485.15, intron 11 of 13) protein_coding-intron (ENSMUSG00000027485.15, intron 11 of 15) -8534 ENSMUSG00000038572.7 ENSMUSG00000038572 ENSMUST00000045959 Bpifb5 protein_coding Interval_26167 chr11 54848019 54848407 + 0 NA intron (ENSMUSG00000020268.14, intron 4 of 7) protein_coding-intron (ENSMUSG00000020268.14, intron 3 of 3) 12703 ENSMUSG00000020268.14 ENSMUSG00000020268 ENSMUST00000135853 Lyrm7 protein_coding Interval_128917 chr5 116081939 116083327 + 0 NA intron (ENSMUSG00000079278.2, intron 1 of 2) protein_coding-intron (ENSMUSG00000079278.2, intron 1 of 2) 613 ENSMUSG00000079278.2 ENSMUSG00000079278 ENSMUST00000239438 Tmem233 protein_coding Interval_14105 chr10 27207166 27207879 + 0 NA exon (ENSMUSG00000019899.17, exon 3 of 4) protein_coding-exon (ENSMUSG00000019899.17, exon 3 of 4) 4732 ENSMUSG00000019899.17 ENSMUSG00000019899 ENSMUST00000187535 Lama2 protein_coding Interval_121710 chr5 5559148 5560059 + 0 NA promoter-TSS (ENSMUSG00000040464.15) protein_coding-promoter-TSS (ENSMUSG00000040464.15) -87 ENSMUSG00000040464.15 ENSMUSG00000040464 ENSMUST00000198799 Gtpbp10 protein_coding Interval_48104 chr13 96070259 96070732 + 0 NA intron (ENSMUSG00000051111.16, intron 1 of 10) protein_coding-intron (ENSMUSG00000051111.16, intron 2 of 12) 10881 ENSMUSG00000114133.1 ENSMUSG00000114133 ENSMUST00000220449 Gm20075 protein_coding Interval_1396 chr1 21309750 21310531 + 0 NA Intergenic Intergenic 6180 ENSMUSG00000093963.1 ENSMUSG00000093963 ENSMUST00000178260 Gm21909 unprocessed_pseudogene Interval_103043 chr3 34709680 34710176 + 0 NA exon (ENSMUSG00000105153.4, exon 4 of 4) lincRNA-exon (ENSMUSG00000105153.4, exon 4 of 4) 6734 ENSMUSG00000105153.4 ENSMUSG00000105153 ENSMUST00000198364 Gm3143 lincRNA Interval_61342 chr15 80953341 80953998 + 0 NA TTS (ENSMUSG00000058357.2) processed_pseudogene-TTS (ENSMUSG00000058357.2) 1164 ENSMUSG00000058357.2 ENSMUSG00000058357 ENSMUST00000170777 Gm6612 processed_pseudogene Interval_61720 chr15 83574297 83574696 + 0 NA TTS (ENSMUSG00000016757.11) protein_coding-TTS (ENSMUSG00000016757.11) 10621 ENSMUSG00000041736.7 ENSMUSG00000041736 ENSMUST00000208463 Tspo protein_coding Interval_165406 chr9 47558859 47559431 + 0 NA intron (ENSMUSG00000032076.20, intron 1 of 8) protein_coding-intron (ENSMUSG00000032076.20, intron 1 of 8) 28793 ENSMUSG00000032076.20 ENSMUSG00000032076 ENSMUST00000034581 Cadm1 protein_coding Interval_138298 chr6 87025493 87026271 + 0 NA TTS (ENSMUSG00000029993.16) protein_coding-TTS (ENSMUSG00000029993.16) 16002 ENSMUSG00000029993.16 ENSMUSG00000029993 ENSMUST00000204103 Nfu1 protein_coding Interval_134879 chr6 33036512 33037420 + 0 NA intron (ENSMUSG00000053768.13, intron 2 of 7) protein_coding-intron (ENSMUSG00000053768.13, intron 2 of 7) -1502 ENSMUSG00000085847.1 ENSMUSG00000085847 ENSMUST00000138298 Gm14540 antisense Interval_159544 chr8 95351600 95353664 + 0 NA exon (ENSMUSG00000031790.8, exon 1 of 10) protein_coding-exon (ENSMUSG00000031790.8, exon 1 of 10) -17239 ENSMUSG00000031790.8 ENSMUSG00000031790 ENSMUST00000212235 Mmp15 protein_coding Interval_156282 chr8 46934713 46935372 + 0 NA Intergenic Intergenic 13757 ENSMUSG00000109759.1 ENSMUSG00000109759 ENSMUST00000210613 1700011L03Rik lincRNA Interval_57266 chr15 8237478 8237923 + 0 NA intron (ENSMUSG00000039801.7, intron 38 of 52) protein_coding-intron (ENSMUSG00000039801.7, intron 38 of 52) 14557 ENSMUSG00000039801.7 ENSMUSG00000039801 ENSMUST00000128772 Cplane1 protein_coding Interval_32288 chr11 106704084 106705051 + 0 NA intron (ENSMUSG00000020717.19, intron 2 of 14) protein_coding-intron (ENSMUSG00000020717.19, intron 3 of 15) -41241 ENSMUSG00000020717.19 ENSMUSG00000020717 ENSMUST00000124958 Pecam1 protein_coding Interval_82102 chr18 67740307 67741246 + 0 NA Intergenic Intergenic 34081 ENSMUSG00000097835.1 ENSMUSG00000097835 ENSMUST00000180450 Gm26910 bidirectional_promoter_lncRNA Interval_147323 chr7 65845082 65845627 + 0 NA Intergenic Intergenic 16638 ENSMUSG00000093405.1 ENSMUSG00000093405 ENSMUST00000176744 Gm20684 bidirectional_promoter_lncRNA Interval_49601 chr13 113394575 113395187 + 0 NA Intergenic Intergenic -8207 ENSMUSG00000088814.1 ENSMUSG00000088814 ENSMUST00000158189 Gm22385 rRNA Interval_127341 chr5 103231885 103232143 + 0 NA intron (ENSMUSG00000104956.1, intron 6 of 6) lincRNA-intron (ENSMUSG00000104956.1, intron 6 of 6) -20680 ENSMUSG00000046709.18 ENSMUSG00000046709 ENSMUST00000136595 Mapk10 protein_coding Interval_128834 chr5 115515176 115517236 + 0 NA promoter-TSS (ENSMUSG00000029528.19) protein_coding-promoter-TSS (ENSMUSG00000029528.19) 943 ENSMUSG00000086849.1 ENSMUSG00000086849 ENSMUST00000149608 Gm13840 sense_intronic Interval_122952 chr5 27790790 27792288 + 0 NA promoter-TSS (ENSMUSG00000002221.11) protein_coding-promoter-TSS (ENSMUSG00000002221.11) 152 ENSMUSG00000002221.11 ENSMUSG00000002221 ENSMUST00000199714 Paxip1 protein_coding Interval_160071 chr8 106186286 106186540 + 0 NA intron (ENSMUSG00000031904.5, intron 2 of 8) protein_coding-intron (ENSMUSG00000031904.5, intron 2 of 9) 17538 ENSMUSG00000031904.5 ENSMUSG00000031904 ENSMUST00000212802 Slc7a6 protein_coding Interval_138213 chr6 86343647 86345050 + 0 NA Intergenic Intergenic -7503 ENSMUSG00000107819.1 ENSMUSG00000107819 ENSMUST00000204643 Gm18862 unprocessed_pseudogene Interval_77385 chr17 88354352 88354538 + 0 NA intron (ENSMUSG00000117351.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000117351.1, intron 1 of 1) -11963 ENSMUSG00000088791.1 ENSMUSG00000088791 ENSMUST00000158166 Gm22542 snRNA Interval_84730 chr19 15995928 15996293 + 0 NA intron (ENSMUSG00000097557.2, intron 2 of 2) bidirectional_promoter_lncRNA-intron (ENSMUSG00000097557.2, intron 2 of 2) 11032 ENSMUSG00000097557.2 ENSMUSG00000097557 ENSMUST00000181731 C130060C02Rik bidirectional_promoter_lncRNA Interval_38986 chr12 84293469 84294344 + 0 NA intron (ENSMUSG00000072946.12, intron 2 of 4) protein_coding-intron (ENSMUSG00000072946.12, intron 2 of 9) 8507 ENSMUSG00000072946.12 ENSMUSG00000072946 ENSMUST00000123693 Ptgr2 protein_coding Interval_140303 chr6 116280495 116281217 + 0 NA intron (ENSMUSG00000042213.17, intron 3 of 6) protein_coding-intron (ENSMUSG00000042213.17, intron 2 of 9) 16591 ENSMUSG00000042213.17 ENSMUSG00000042213 ENSMUST00000221824 Zfand4 protein_coding Interval_124379 chr5 45243148 45243560 + 0 NA TTS (ENSMUSG00000105247.1) TEC-TTS (ENSMUSG00000105247.1) 3953 ENSMUSG00000105247.1 ENSMUSG00000105247 ENSMUST00000199282 Gm42519 TEC Interval_31904 chr11 103741570 103741965 + 0 NA intron (ENSMUSG00000018486.2, intron 1 of 3) protein_coding-intron (ENSMUSG00000018486.2, intron 1 of 3) 8054 ENSMUSG00000018486.2 ENSMUSG00000018486 ENSMUST00000018630 Wnt9b protein_coding Interval_107202 chr3 104572673 104573567 + 0 NA Intergenic Intergenic 28119 ENSMUSG00000084653.1 ENSMUSG00000084653 ENSMUST00000122704 Gm26091 snRNA Interval_93211 chr2 71180507 71181892 + 0 NA Intergenic Intergenic -30805 ENSMUSG00000027012.15 ENSMUSG00000027012 ENSMUST00000138613 Dync1i2 protein_coding Interval_41014 chr12 110608311 110609516 + 0 NA intron (ENSMUSG00000018707.13, intron 1 of 76) protein_coding-intron (ENSMUSG00000018707.13, intron 1 of 76) -6950 ENSMUSG00000113662.1 ENSMUSG00000113662 ENSMUST00000222675 Gm35558 TEC Interval_67168 chr16 44122305 44122802 + 0 NA intron (ENSMUSG00000052459.13, intron 1 of 3) protein_coding-intron (ENSMUSG00000052459.13, intron 1 of 14) 17152 ENSMUSG00000052459.13 ENSMUSG00000052459 ENSMUST00000147025 Atp6v1a protein_coding Interval_56129 chr14 106251012 106251266 + 0 NA intron (ENSMUSG00000115754.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000115754.1, intron 1 of 1) 10114 ENSMUSG00000065193.1 ENSMUSG00000065193 ENSMUST00000083259 Gm23459 snRNA Interval_35442 chr12 21783675 21785040 + 0 NA Intergenic Intergenic -7650 ENSMUSG00000091105.1 ENSMUSG00000091105 ENSMUST00000164169 Mrto4-ps2 processed_pseudogene Interval_25514 chr11 49410673 49410994 + 0 NA Intergenic Intergenic 6213 ENSMUSG00000084278.1 ENSMUSG00000084278 ENSMUST00000119779 Gm12189 processed_pseudogene Interval_158236 chr8 80318123 80319570 + 0 NA Intergenic Intergenic 123647 ENSMUSG00000110294.1 ENSMUSG00000110294 ENSMUST00000211276 Gm45430 lincRNA Interval_66752 chr16 37018416 37018711 + 0 NA TTS (ENSMUSG00000034206.15) protein_coding-TTS (ENSMUSG00000034206.15) 6777 ENSMUSG00000034206.15 ENSMUSG00000034206 ENSMUST00000182717 Polq protein_coding Interval_61098 chr15 79212531 79214134 + 0 NA intron (ENSMUSG00000075555.12, intron 2 of 3) processed_transcript-intron (ENSMUSG00000075555.12, intron 4 of 4) -16059 ENSMUSG00000116121.1 ENSMUSG00000116121 ENSMUST00000053926 Gm49486 protein_coding Interval_40596 chr12 105929057 105930306 + 0 NA Intergenic Intergenic 29840 ENSMUSG00000113835.1 ENSMUSG00000113835 ENSMUST00000220934 Gm19554 lincRNA Interval_19058 chr10 94126659 94126889 + 0 NA intron (ENSMUSG00000020021.4, intron 13 of 20) protein_coding-intron (ENSMUSG00000020021.4, intron 13 of 20) 18035 ENSMUSG00000111539.1 ENSMUSG00000111539 ENSMUST00000214721 Gm48372 TEC Interval_98749 chr2 154665369 154666866 + 0 NA intron (ENSMUSG00000038467.15, intron 1 of 4) protein_coding-intron (ENSMUSG00000038467.15, intron 1 of 4) 14412 ENSMUSG00000038467.15 ENSMUSG00000038467 ENSMUST00000136788 Chmp4b protein_coding Interval_13233 chr10 13369719 13370031 + 0 NA intron (ENSMUSG00000062866.16, intron 1 of 12) protein_coding-intron (ENSMUSG00000062866.16, intron 1 of 12) 18856 ENSMUSG00000062866.16 ENSMUSG00000062866 ENSMUST00000154265 Phactr2 protein_coding Interval_80544 chr18 43698411 43698642 + 0 NA Intergenic Intergenic 39031 ENSMUSG00000024503.3 ENSMUSG00000024503 ENSMUST00000025381 Spink1 protein_coding Interval_143478 chr7 7171215 7172236 + 0 NA exon (ENSMUSG00000034538.8, exon 1 of 1) protein_coding-exon (ENSMUSG00000034538.8, exon 1 of 1) 371 ENSMUSG00000034538.8 ENSMUSG00000034538 ENSMUST00000209387 Zfp418 protein_coding Interval_125498 chr5 67662348 67662700 + 0 NA intron (ENSMUSG00000037685.15, intron 24 of 33) protein_coding-intron (ENSMUSG00000037685.15, intron 27 of 36) 20123 ENSMUSG00000085363.1 ENSMUSG00000085363 ENSMUST00000145914 Gm15478 antisense Interval_16079 chr10 60596264 60596924 + 0 NA intron (ENSMUSG00000012819.15, intron 7 of 7) protein_coding-intron (ENSMUSG00000012819.15, intron 5 of 66) 156189 ENSMUSG00000020100.15 ENSMUSG00000020100 ENSMUST00000144989 Slc29a3 protein_coding Interval_98390 chr2 152011085 152013488 + 0 NA Intergenic Intergenic 12421 ENSMUSG00000027463.14 ENSMUSG00000027463 ENSMUST00000109858 Slc52a3 protein_coding Interval_4829 chr1 79878691 79878902 + 0 NA Intergenic Intergenic 44630 ENSMUSG00000067106.6 ENSMUSG00000067106 ENSMUST00000165691 Gm5529 processed_pseudogene Interval_42836 chr13 20144743 20145076 + 0 NA intron (ENSMUSG00000041112.17, intron 1 of 13) protein_coding-intron (ENSMUSG00000041112.17, intron 1 of 21) -126996 ENSMUSG00000113649.1 ENSMUSG00000113649 ENSMUST00000222367 Gm47665 TEC Interval_80641 chr18 45040250 45040540 + 0 NA Intergenic Intergenic -4467 ENSMUSG00000118013.1 ENSMUSG00000118013 ENSMUST00000238022 Gm31706 lincRNA Interval_133097 chr5 149780281 149780883 + 0 NA Intergenic Intergenic 31169 ENSMUSG00000106740.1 ENSMUSG00000106740 ENSMUST00000202876 Gm21221 lincRNA Interval_79407 chr18 31713394 31714837 + 0 NA intron (ENSMUSG00000024260.14, intron 18 of 20) protein_coding-intron (ENSMUSG00000024260.14, intron 18 of 20) -24600 ENSMUSG00000117533.1 ENSMUSG00000117533 ENSMUST00000234849 Gm50060 processed_pseudogene Interval_28120 chr11 72983271 72983471 + 0 NA intron (ENSMUSG00000020788.15, intron 16 of 21) protein_coding-intron (ENSMUSG00000020788.15, intron 16 of 21) 22202 ENSMUSG00000020788.15 ENSMUSG00000020788 ENSMUST00000135234 Atp2a3 protein_coding Interval_62457 chr15 93143421 93145121 + 0 NA Intergenic Intergenic -6729 ENSMUSG00000116124.1 ENSMUSG00000116124 ENSMUST00000230014 Gm49420 processed_transcript Interval_112147 chr4 34941865 34942174 + 0 NA promoter-TSS (ENSMUSG00000082709.1) processed_pseudogene-promoter-TSS (ENSMUSG00000082709.1) -670 ENSMUSG00000082709.1 ENSMUSG00000082709 ENSMUST00000121986 Gm12362 processed_pseudogene Interval_171278 chr9 115954561 115955311 + 0 NA intron (ENSMUSG00000056880.12, intron 7 of 13) protein_coding-intron (ENSMUSG00000056880.12, intron 8 of 14) 17794 ENSMUSG00000056880.12 ENSMUSG00000056880 ENSMUST00000121770 Gadl1 protein_coding Interval_124825 chr5 55791272 55792871 + 0 NA exon (ENSMUSG00000105678.1, exon 1 of 1) TEC-exon (ENSMUSG00000105678.1, exon 1 of 1) 816 ENSMUSG00000105678.1 ENSMUSG00000105678 ENSMUST00000195958 Gm43705 TEC Interval_165525 chr9 49023826 49025093 + 0 NA TTS (ENSMUSG00000032267.8) protein_coding-TTS (ENSMUSG00000032267.8) -13217 ENSMUSG00000032267.8 ENSMUSG00000032267 ENSMUST00000216657 Usp28 protein_coding Interval_144895 chr7 28808740 28811524 + 0 NA promoter-TSS (ENSMUSG00000015165.16) protein_coding-promoter-TSS (ENSMUSG00000015165.16) 365 ENSMUSG00000109420.1 ENSMUSG00000109420 ENSMUST00000209194 Gm44702 antisense Interval_126733 chr5 92386482 92386896 + 0 NA promoter-TSS (ENSMUSG00000034842.16) protein_coding-promoter-TSS (ENSMUSG00000034842.16) -21204 ENSMUSG00000060183.6 ENSMUSG00000060183 ENSMUST00000077820 Cxcl11 polymorphic_pseudogene Interval_94138 chr2 84626982 84627162 + 0 NA intron (ENSMUSG00000101645.1, intron 2 of 20) protein_coding-intron (ENSMUSG00000034101.14, intron 1 of 18) -17375 ENSMUSG00000034101.14 ENSMUSG00000034101 ENSMUST00000149317 Ctnnd1 protein_coding Interval_98438 chr2 152358896 152359314 + 0 NA intron (ENSMUSG00000068062.3, intron 1 of 4) processed_transcript-intron (ENSMUSG00000068062.3, intron 1 of 4) 5490 ENSMUSG00000081434.3 ENSMUSG00000081434 ENSMUST00000121456 Gm14165 processed_pseudogene Interval_48651 chr13 100853120 100853386 + 0 NA intron (ENSMUSG00000100596.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000100596.1, intron 1 of 2) 5820 ENSMUSG00000100596.1 ENSMUSG00000100596 ENSMUST00000185979 Gm29502 lincRNA Interval_126779 chr5 92884726 92885214 + 0 NA intron (ENSMUSG00000029381.16, intron 1 of 9) protein_coding-intron (ENSMUSG00000029381.16, intron 1 of 9) 28499 ENSMUSG00000029381.16 ENSMUSG00000029381 ENSMUST00000172752 Shroom3 protein_coding Interval_144506 chr7 25536846 25537033 + 0 NA intron (ENSMUSG00000053714.8, intron 6 of 6) protein_coding-intron (ENSMUSG00000054385.14, intron 2 of 8) 154 ENSMUSG00000054385.14 ENSMUSG00000054385 ENSMUST00000145681 Ceacam2 protein_coding Interval_133138 chr5 150110544 150113068 + 0 NA Intergenic Intergenic -29011 ENSMUSG00000107384.1 ENSMUSG00000107384 ENSMUST00000202037 Gm42557 antisense Interval_106231 chr3 94805733 94805917 + 0 NA Intergenic Intergenic -19310 ENSMUSG00000068876.16 ENSMUSG00000068876 ENSMUST00000155485 Cgn protein_coding Interval_20771 chr10 120875808 120876862 + 0 NA intron (ENSMUSG00000051236.13, intron 1 of 6) protein_coding-intron (ENSMUSG00000051236.13, intron 1 of 6) 18706 ENSMUSG00000087480.1 ENSMUSG00000087480 ENSMUST00000127564 Gm15910 antisense Interval_12207 chr1 190841290 190841580 + 0 NA intron (ENSMUSG00000089872.10, intron 4 of 8) protein_coding-intron (ENSMUSG00000089872.10, intron 7 of 14) 58282 ENSMUSG00000089872.10 ENSMUSG00000089872 ENSMUST00000159066 Rps6kc1 protein_coding Interval_92716 chr2 63805378 63806246 + 0 NA Intergenic Intergenic 292198 ENSMUSG00000075324.13 ENSMUSG00000075324 ENSMUST00000153538 Fign protein_coding Interval_48972 chr13 106454323 106454741 + 0 NA Intergenic Intergenic -21404 ENSMUSG00000114217.1 ENSMUSG00000114217 ENSMUST00000224407 Gm7054 processed_pseudogene Interval_112315 chr4 40300700 40301891 + 0 NA Intergenic Intergenic -11937 ENSMUSG00000087137.1 ENSMUSG00000087137 ENSMUST00000144039 4930509K18Rik lincRNA Interval_104210 chr3 60580110 60580987 + 0 NA intron (ENSMUSG00000027763.13, intron 2 of 3) protein_coding-intron (ENSMUSG00000027763.13, intron 2 of 9) -23836 ENSMUSG00000104125.1 ENSMUSG00000104125 ENSMUST00000195434 Gm37488 TEC Interval_154816 chr8 23649303 23649802 + 0 NA intron (ENSMUSG00000037492.16, intron 1 of 3) protein_coding-intron (ENSMUSG00000037492.16, intron 1 of 3) -20109 ENSMUSG00000037492.16 ENSMUSG00000037492 ENSMUST00000146774 Zmat4 protein_coding Interval_33194 chr11 115146546 115147070 + 0 NA exon (ENSMUSG00000020732.13, exon 2 of 2) protein_coding-exon (ENSMUSG00000020732.13, exon 2 of 2) -7395 ENSMUSG00000020732.13 ENSMUSG00000020732 ENSMUST00000156383 Rab37 protein_coding Interval_142187 chr6 137980806 137983003 + 0 NA Intergenic Intergenic -61933 ENSMUSG00000094466.1 ENSMUSG00000094466 ENSMUST00000177773 Gm24308 miRNA Interval_137252 chr6 70768452 70770013 + 0 NA intron (ENSMUSG00000053604.5, intron 2 of 2) protein_coding-intron (ENSMUSG00000053604.5, intron 8 of 8) 22771 ENSMUSG00000053604.5 ENSMUSG00000053604 ENSMUST00000129244 Rpia protein_coding Interval_27044 chr11 62527359 62527836 + 0 NA exon (ENSMUSG00000018509.8, exon 4 of 5) protein_coding-exon (ENSMUSG00000018509.8, exon 4 of 5) 4856 ENSMUSG00000086636.1 ENSMUSG00000086636 ENSMUST00000143382 Gm12949 antisense Interval_114783 chr4 85231923 85233408 + 0 NA intron (ENSMUSG00000028488.15, intron 1 of 7) protein_coding-intron (ENSMUSG00000028488.15, intron 1 of 8) 13097 ENSMUSG00000081862.1 ENSMUSG00000081862 ENSMUST00000121508 Gm12413 processed_pseudogene Interval_64960 chr16 17532400 17532912 + 0 NA Intergenic Intergenic 1474 ENSMUSG00000116898.1 ENSMUSG00000116898 ENSMUST00000231565 Gm49785 bidirectional_promoter_lncRNA Interval_99411 chr2 160743993 160744395 + 0 NA exon (ENSMUSG00000098889.1, exon 4 of 4) antisense-exon (ENSMUSG00000098889.1, exon 4 of 4) 7715 ENSMUSG00000098889.1 ENSMUSG00000098889 ENSMUST00000154038 Gm27206 antisense Interval_20868 chr10 121616031 121616553 + 0 NA intron (ENSMUSG00000034667.8, intron 5 of 24) protein_coding-intron (ENSMUSG00000034667.8, intron 5 of 24) 2251 ENSMUSG00000092841.1 ENSMUSG00000092841 ENSMUST00000175100 Gm24330 miRNA Interval_165743 chr9 52098747 52099059 + 0 NA intron (ENSMUSG00000032050.18, intron 14 of 14) protein_coding-intron (ENSMUSG00000032050.18, intron 14 of 14) 4876 ENSMUSG00000099213.1 ENSMUSG00000099213 ENSMUST00000185123 Gm27686 miRNA Interval_108593 chr3 129386696 129387227 + 0 NA Intergenic Intergenic 12851 ENSMUSG00000105278.1 ENSMUSG00000105278 ENSMUST00000195908 Gm42630 TEC Interval_60192 chr15 67175990 67177499 + 0 NA promoter-TSS (ENSMUSG00000013846.10) protein_coding-promoter-TSS (ENSMUSG00000013846.10) -47721 ENSMUSG00000013846.10 ENSMUSG00000013846 ENSMUST00000230150 St3gal1 protein_coding Interval_92846 chr2 66408512 66410232 + 0 NA promoter-TSS (ENSMUSG00000085386.1) processed_transcript-promoter-TSS (ENSMUSG00000085386.1) -122 ENSMUSG00000085386.1 ENSMUSG00000085386 ENSMUST00000127849 Gm13630 processed_transcript Interval_33204 chr11 115209133 115210515 + 0 NA intron (ENSMUSG00000045980.13, intron 8 of 8) protein_coding-intron (ENSMUSG00000045980.13, intron 8 of 9) 22273 ENSMUSG00000045980.13 ENSMUSG00000045980 ENSMUST00000156230 Tmem104 protein_coding Interval_96144 chr2 120027031 120028455 + 0 NA promoter-TSS (ENSMUSG00000087458.1) antisense-promoter-TSS (ENSMUSG00000087458.1) 186 ENSMUSG00000098789.7 ENSMUSG00000098789 ENSMUST00000129679 Jmjd7 protein_coding Interval_47786 chr13 92740523 92741256 + 0 NA Intergenic Intergenic 21527 ENSMUSG00000114631.1 ENSMUSG00000114631 ENSMUST00000223855 Gm5199 processed_pseudogene Interval_163265 chr9 20428521 20429693 + 0 NA exon (ENSMUSG00000063108.15, exon 10 of 10) protein_coding-exon (ENSMUSG00000063108.15, exon 10 of 10) 15932 ENSMUSG00000110811.1 ENSMUSG00000110811 ENSMUST00000213612 Gm48729 processed_pseudogene Interval_25577 chr11 49893857 49894290 + 0 NA Intergenic Intergenic -1658 ENSMUSG00000080487.1 ENSMUSG00000080487 ENSMUST00000116837 Gm23492 miRNA Interval_17835 chr10 80315125 80316716 + 0 NA exon (ENSMUSG00000020135.13, exon 14 of 14) protein_coding-exon (ENSMUSG00000020135.13, exon 14 of 14) 4617 ENSMUSG00000020133.8 ENSMUSG00000020133 ENSMUST00000020341 2310011J03Rik protein_coding Interval_51215 chr14 25099496 25100354 + 0 NA Intergenic Intergenic -9459 ENSMUSG00000114288.1 ENSMUSG00000114288 ENSMUST00000225462 Gm32123 lincRNA Interval_50267 chr14 11547408 11547907 + 0 NA Intergenic Intergenic -26887 ENSMUSG00000114849.1 ENSMUSG00000114849 ENSMUST00000224543 Gm48595 lincRNA Interval_78031 chr18 7088502 7088784 + 0 NA intron (ENSMUSG00000061802.6, intron 20 of 20) protein_coding-intron (ENSMUSG00000061802.6, intron 20 of 20) 19540 ENSMUSG00000117360.1 ENSMUSG00000117360 ENSMUST00000234034 Gm18581 processed_pseudogene Interval_6436 chr1 108562514 108563346 + 0 NA Intergenic Intergenic 49584 ENSMUSG00000101231.1 ENSMUSG00000101231 ENSMUST00000185509 Gm28283 processed_pseudogene Interval_141046 chr6 124662250 124663665 + 0 NA promoter-TSS (ENSMUSG00000004270.13) protein_coding-promoter-TSS (ENSMUSG00000004270.13) -26872 ENSMUSG00000079343.4 ENSMUSG00000079343 ENSMUST00000218020 C1s2 protein_coding Interval_28593 chr11 77029628 77029847 + 0 NA intron (ENSMUSG00000020838.12, intron 14 of 14) protein_coding-intron (ENSMUSG00000020838.12, intron 13 of 13) 11560 ENSMUSG00000020838.12 ENSMUSG00000020838 ENSMUST00000137819 Slc6a4 protein_coding Interval_171626 chr9 119647244 119648212 + 0 NA exon (ENSMUSG00000034533.10, exon 12 of 12) protein_coding-exon (ENSMUSG00000034533.10, exon 12 of 12) 40311 ENSMUSG00000034533.10 ENSMUSG00000034533 ENSMUST00000213401 Scn10a protein_coding Interval_70422 chr17 10050880 10051377 + 0 NA Intergenic Intergenic 103291 ENSMUSG00000117206.1 ENSMUSG00000117206 ENSMUST00000233132 Gm49809 processed_pseudogene Interval_109763 chr3 146703481 146704303 + 0 NA Intergenic Intergenic 7673 ENSMUSG00000105529.1 ENSMUSG00000105529 ENSMUST00000198038 Gm9480 processed_pseudogene Interval_81130 chr18 54576368 54577300 + 0 NA Intergenic Intergenic -34910 ENSMUSG00000118154.1 ENSMUSG00000118154 ENSMUST00000237954 9330117O12Rik lincRNA Interval_43584 chr13 33842986 33843341 + 0 NA intron (ENSMUSG00000069248.11, intron 1 of 7) protein_coding-intron (ENSMUSG00000069248.11, intron 1 of 7) 245 ENSMUSG00000069248.11 ENSMUSG00000069248 ENSMUST00000145221 Serpinb6e protein_coding Interval_152309 chr7 131628327 131628624 + 0 NA intron (ENSMUSG00000030849.18, intron 2 of 6) protein_coding-intron (ENSMUSG00000030849.18, intron 2 of 6) -13487 ENSMUSG00000062758.6 ENSMUSG00000062758 ENSMUST00000085365 Gm16477 processed_pseudogene Interval_158293 chr8 80879111 80881017 + 0 NA exon (ENSMUSG00000031714.9, exon 1 of 10) protein_coding-exon (ENSMUSG00000031714.9, exon 1 of 10) 124 ENSMUSG00000109587.1 ENSMUSG00000109587 ENSMUST00000211421 Gm31105 antisense Interval_161549 chr8 121127875 121129097 + 0 NA exon (ENSMUSG00000097084.1, exon 1 of 1) protein_coding-exon (ENSMUSG00000097084.1, exon 1 of 1) 546 ENSMUSG00000097084.1 ENSMUSG00000097084 ENSMUST00000181609 Foxl1 protein_coding Interval_158082 chr8 78609021 78610481 + 0 NA intron (ENSMUSG00000031684.11, intron 1 of 2) protein_coding-intron (ENSMUSG00000031684.11, intron 5 of 11) 5457 ENSMUSG00000110244.1 ENSMUSG00000110244 ENSMUST00000211775 Gm2253 processed_pseudogene Interval_12270 chr1 191299324 191300013 + 0 NA Intergenic Intergenic 18526 ENSMUSG00000037499.9 ENSMUSG00000037499 ENSMUST00000046770 Nenf protein_coding Interval_30119 chr11 89356361 89356700 + 0 NA Intergenic Intergenic 53807 ENSMUSG00000085798.1 ENSMUSG00000085798 ENSMUST00000140754 Gm2018 lincRNA Interval_50741 chr14 18809709 18810084 + 0 NA intron (ENSMUSG00000058317.12, intron 3 of 4) protein_coding-intron (ENSMUSG00000058317.12, intron 2 of 4) -4273 ENSMUSG00000077689.1 ENSMUSG00000077689 ENSMUST00000104501 Gm22499 snoRNA Interval_93062 chr2 69891016 69891363 + 0 NA Intergenic Intergenic 5461 ENSMUSG00000085735.1 ENSMUSG00000085735 ENSMUST00000129114 Mettl5os antisense Interval_35176 chr12 17795498 17796353 + 0 NA Intergenic Intergenic 67699 ENSMUSG00000071379.2 ENSMUSG00000071379 ENSMUST00000222944 Hpcal1 protein_coding Interval_142903 chr6 146810087 146810499 + 0 NA intron (ENSMUSG00000040187.15, intron 3 of 14) protein_coding-intron (ENSMUSG00000040187.15, intron 3 of 14) -20231 ENSMUSG00000040187.15 ENSMUSG00000040187 ENSMUST00000204578 Arntl2 protein_coding Interval_10614 chr1 172218213 172219355 + 0 NA intron (ENSMUSG00000007122.11, intron 1 of 10) protein_coding-intron (ENSMUSG00000007122.11, intron 1 of 10) 931 ENSMUSG00000007122.11 ENSMUSG00000007122 ENSMUST00000170700 Casq1 protein_coding Interval_58894 chr15 39790491 39791732 + 0 NA intron (ENSMUSG00000022304.13, intron 1 of 2) protein_coding-intron (ENSMUSG00000022304.13, intron 8 of 9) 2140 ENSMUSG00000022304.13 ENSMUSG00000022304 ENSMUST00000150196 Dpys protein_coding Interval_101936 chr3 12468486 12468901 + 0 NA Intergenic Intergenic -84084 ENSMUSG00000103339.1 ENSMUSG00000103339 ENSMUST00000191859 Gm37996 processed_pseudogene Interval_105972 chr3 90372914 90373838 + 0 NA Intergenic Intergenic 15605 ENSMUSG00000027932.14 ENSMUSG00000027932 ENSMUST00000127064 Slc27a3 protein_coding Interval_114307 chr4 72132897 72133246 + 0 NA intron (ENSMUSG00000008305.18, intron 12 of 17) protein_coding-intron (ENSMUSG00000008305.18, intron 14 of 19) 8242 ENSMUSG00000008305.18 ENSMUSG00000008305 ENSMUST00000134225 Tle1 protein_coding Interval_115037 chr4 88773000 88773926 + 0 NA promoter-TSS (ENSMUSG00000094271.1) protein_coding-promoter-TSS (ENSMUSG00000094271.1) -371 ENSMUSG00000094271.1 ENSMUSG00000094271 ENSMUST00000177806 Gm13290 protein_coding Interval_83536 chr18 88951854 88952214 + 0 NA Intergenic Intergenic 13888 ENSMUSG00000117777.1 ENSMUSG00000117777 ENSMUST00000235800 Gm50267 processed_pseudogene Interval_75435 chr17 66533017 66533276 + 0 NA intron (ENSMUSG00000117235.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000117235.1, intron 1 of 2) 1043 ENSMUSG00000117235.1 ENSMUSG00000117235 ENSMUST00000233785 Gm49938 lincRNA Interval_104536 chr3 67514504 67515963 + 0 NA exon (ENSMUSG00000049404.7, exon 1 of 6) protein_coding-exon (ENSMUSG00000049404.7, exon 1 of 6) 290 ENSMUSG00000049404.7 ENSMUSG00000049404 ENSMUST00000054825 Rarres1 protein_coding Interval_28580 chr11 76945203 76946427 + 0 NA promoter-TSS (ENSMUSG00000020840.10) protein_coding-promoter-TSS (ENSMUSG00000020840.10) -36 ENSMUSG00000020840.10 ENSMUSG00000020840 ENSMUST00000145732 Blmh protein_coding Interval_59799 chr15 59373799 59374914 + 0 NA promoter-TSS (ENSMUSG00000022350.7) protein_coding-promoter-TSS (ENSMUSG00000022350.7) 71 ENSMUSG00000059586.10 ENSMUSG00000059586 ENSMUST00000079703 Nsmce2 protein_coding Interval_51825 chr14 32519959 32521052 + 0 NA intron (ENSMUSG00000054051.7, intron 3 of 5) protein_coding-intron (ENSMUSG00000054051.7, intron 3 of 20) -32070 ENSMUSG00000054051.7 ENSMUSG00000054051 ENSMUST00000228549 Ercc6 protein_coding Interval_168223 chr9 78028275 78029120 + 0 NA TTS (ENSMUSG00000111850.1) processed_pseudogene-TTS (ENSMUSG00000111850.1) 752 ENSMUSG00000111850.1 ENSMUSG00000111850 ENSMUST00000216404 Gm47829 processed_pseudogene Interval_59942 chr15 62123448 62124461 + 0 NA intron (ENSMUSG00000097039.8, intron 2 of 6) lincRNA-intron (ENSMUSG00000097039.8, intron 2 of 8) 16767 ENSMUSG00000099295.1 ENSMUSG00000099295 ENSMUST00000183721 Gm27718 misc_RNA Interval_157595 chr8 71610474 71612608 + 0 NA intron (ENSMUSG00000034807.9, intron 1 of 10) protein_coding-intron (ENSMUSG00000034807.9, intron 1 of 11) -9142 ENSMUSG00000034807.9 ENSMUSG00000034807 ENSMUST00000212706 Colgalt1 protein_coding Interval_156528 chr8 49606374 49607014 + 0 NA Intergenic Intergenic 85270 ENSMUSG00000110688.1 ENSMUSG00000110688 ENSMUST00000212088 Gm45696 TEC Interval_138357 chr6 87567730 87568525 + 0 NA Intergenic Intergenic 22616 ENSMUSG00000049409.9 ENSMUSG00000049409 ENSMUST00000203636 Prokr1 protein_coding Interval_69842 chr16 97417878 97418398 + 0 NA intron (ENSMUSG00000040605.7, intron 1 of 1) protein_coding-intron (ENSMUSG00000040605.7, intron 6 of 8) 3060 ENSMUSG00000040605.7 ENSMUSG00000040605 ENSMUST00000231892 Bace2 protein_coding Interval_116767 chr4 117169628 117170763 + 0 NA intron (ENSMUSG00000028678.13, intron 7 of 18) protein_coding-intron (ENSMUSG00000028678.13, intron 8 of 19) 8547 ENSMUSG00000028678.13 ENSMUSG00000028678 ENSMUST00000153953 Kif2c protein_coding Interval_56411 chr14 118602437 118602802 + 0 NA intron (ENSMUSG00000032849.14, intron 13 of 29) protein_coding-intron (ENSMUSG00000032849.14, intron 14 of 30) -10147 ENSMUSG00000098433.1 ENSMUSG00000098433 ENSMUST00000184391 Mir6391 miRNA Interval_21156 chr10 126961763 126962687 + 0 NA promoter-TSS (ENSMUSG00000112761.1) lincRNA-promoter-TSS (ENSMUSG00000112761.1) -98 ENSMUSG00000112761.1 ENSMUSG00000112761 ENSMUST00000217897 Gm47972 lincRNA Interval_47596 chr13 89728706 89728877 + 0 NA intron (ENSMUSG00000021614.16, intron 2 of 2) protein_coding-intron (ENSMUSG00000021614.16, intron 2 of 12) -10673 ENSMUSG00000089940.1 ENSMUSG00000089940 ENSMUST00000161917 Gm4117 antisense Interval_11017 chr1 178425845 178426118 + 0 NA intron (ENSMUSG00000026495.8, intron 1 of 6) protein_coding-intron (ENSMUSG00000026495.8, intron 1 of 6) 19896 ENSMUSG00000026495.8 ENSMUSG00000026495 ENSMUST00000192905 Efcab2 protein_coding Interval_100989 chr2 173967637 173968075 + 0 NA Intergenic Intergenic 16835 ENSMUSG00000081700.1 ENSMUSG00000081700 ENSMUST00000120437 Atp5k-ps2 processed_pseudogene Interval_159865 chr8 104439491 104439922 + 0 NA TTS (ENSMUSG00000110689.1) TEC-TTS (ENSMUSG00000110689.1) 1446 ENSMUSG00000110689.1 ENSMUSG00000110689 ENSMUST00000211988 Gm45731 TEC Interval_80276 chr18 38701005 38701655 + 0 NA intron (ENSMUSG00000118193.1, intron 1 of 5) lincRNA-intron (ENSMUSG00000118257.1, intron 3 of 3) -13070 ENSMUSG00000099488.1 ENSMUSG00000099488 ENSMUST00000190667 Gm19774 processed_pseudogene Interval_143694 chr7 15669379 15669572 + 0 NA Intergenic Intergenic -15851 ENSMUSG00000106346.2 ENSMUSG00000106346 ENSMUST00000198160 Gtpbp4-ps6 processed_pseudogene Interval_58415 chr15 34310516 34310892 + 0 NA intron (ENSMUSG00000022324.15, intron 1 of 13) protein_coding-intron (ENSMUSG00000022324.15, intron 1 of 18) 4019 ENSMUSG00000022324.15 ENSMUSG00000022324 ENSMUST00000227759 Matn2 protein_coding Interval_27773 chr11 69894413 69895735 + 0 NA intron (ENSMUSG00000001588.12, intron 1 of 21) protein_coding-intron (ENSMUSG00000001588.12, intron 1 of 21) -4583 ENSMUSG00000001588.12 ENSMUSG00000001588 ENSMUST00000148037 Acap1 protein_coding Interval_46485 chr13 66519011 66520261 + 0 NA promoter-TSS (ENSMUSG00000097483.2) lincRNA-promoter-TSS (ENSMUSG00000097483.2) -113 ENSMUSG00000097483.2 ENSMUSG00000097483 ENSMUST00000180403 Gm26806 lincRNA Interval_149646 chr7 100342474 100342768 + 0 NA intron (ENSMUSG00000030718.9, intron 1 of 5) protein_coding-intron (ENSMUSG00000030718.9, intron 6 of 13) 29313 ENSMUSG00000030718.9 ENSMUSG00000030718 ENSMUST00000208168 Ppme1 protein_coding Interval_120376 chr4 148192583 148193889 + 0 NA Intergenic Intergenic 32615 ENSMUSG00000041556.8 ENSMUSG00000041556 ENSMUST00000047951 Fbxo2 protein_coding Interval_117698 chr4 125617775 125618800 + 0 NA intron (ENSMUSG00000001985.9, intron 1 of 15) protein_coding-intron (ENSMUSG00000001985.9, intron 1 of 15) 113538 ENSMUSG00000094403.1 ENSMUSG00000094403 ENSMUST00000102081 Mir692-2 miRNA Interval_113508 chr4 55407735 55410500 + 0 NA exon (ENSMUSG00000084404.1, exon 1 of 1) processed_pseudogene-exon (ENSMUSG00000084404.1, exon 1 of 1) 190 ENSMUSG00000084404.1 ENSMUSG00000084404 ENSMUST00000118617 Gm12513 processed_pseudogene Interval_103282 chr3 37896880 37897292 + 0 NA Intergenic Intergenic -1727 ENSMUSG00000106461.1 ENSMUSG00000106461 ENSMUST00000196893 Gm20755 lincRNA Interval_6782 chr1 119451613 119452030 + 0 NA Intergenic Intergenic -29573 ENSMUSG00000037035.5 ENSMUSG00000037035 ENSMUST00000038765 Inhbb protein_coding Interval_134767 chr6 31324020 31325044 + 0 NA intron (ENSMUSG00000087380.7, intron 1 of 3) processed_transcript-intron (ENSMUSG00000087380.7, intron 3 of 6) 31998 ENSMUSG00000087380.7 ENSMUSG00000087380 ENSMUST00000124811 2210408F21Rik processed_transcript Interval_75335 chr17 65929505 65929770 + 0 NA TTS (ENSMUSG00000024098.6) protein_coding-TTS (ENSMUSG00000024098.6) 16050 ENSMUSG00000117229.1 ENSMUSG00000117229 ENSMUST00000233760 Gm35550 lincRNA Interval_134194 chr6 22577730 22579077 + 0 NA Intergenic Intergenic -44515 ENSMUSG00000107282.1 ENSMUSG00000107282 ENSMUST00000201550 Gm43630 processed_pseudogene Interval_129594 chr5 121204178 121205129 + 0 NA promoter-TSS (ENSMUSG00000064841.1) snoRNA-promoter-TSS (ENSMUSG00000064841.1) -357 ENSMUSG00000064841.1 ENSMUSG00000064841 ENSMUST00000082907 Gm26205 snoRNA Interval_85455 chr19 26682862 26683215 + 0 NA intron (ENSMUSG00000024921.17, intron 18 of 33) protein_coding-intron (ENSMUSG00000024921.17, intron 18 of 32) -59628 ENSMUSG00000093628.1 ENSMUSG00000093628 ENSMUST00000177453 Gm20616 antisense Interval_104125 chr3 58843852 58844151 + 0 NA TTS (ENSMUSG00000043850.15) protein_coding-TTS (ENSMUSG00000043850.15) 21796 ENSMUSG00000043850.15 ENSMUSG00000043850 ENSMUST00000161419 Clrn1 protein_coding Interval_70159 chr17 5885409 5887008 + 0 NA intron (ENSMUSG00000002365.10, intron 2 of 3) protein_coding-intron (ENSMUSG00000002365.10, intron 1 of 17) 44856 ENSMUSG00000002365.10 ENSMUSG00000002365 ENSMUST00000231803 Snx9 protein_coding Interval_116711 chr4 116780341 116781295 + 0 NA intron (ENSMUSG00000033985.17, intron 1 of 5) protein_coding-intron (ENSMUSG00000033985.17, intron 4 of 10) 9055 ENSMUSG00000033985.17 ENSMUSG00000033985 ENSMUST00000142529 Tesk2 protein_coding Interval_88508 chr2 5713907 5715707 + 0 NA promoter-TSS (ENSMUSG00000039145.16) protein_coding-promoter-TSS (ENSMUSG00000039145.16) -304 ENSMUSG00000039145.16 ENSMUSG00000039145 ENSMUST00000155927 Camk1d protein_coding Interval_44241 chr13 42793389 42793593 + 0 NA intron (ENSMUSG00000054728.17, intron 3 of 13) protein_coding-intron (ENSMUSG00000054728.17, intron 1 of 11) -5233 ENSMUSG00000089710.1 ENSMUSG00000089710 ENSMUST00000160241 Gm15810 antisense Interval_59870 chr15 60354140 60354489 + 0 NA Intergenic Intergenic -37805 ENSMUSG00000115251.1 ENSMUSG00000115251 ENSMUST00000228258 Gm4774 processed_pseudogene Interval_35590 chr12 25098468 25099836 + 0 NA Intergenic Intergenic -3065 ENSMUSG00000020644.9 ENSMUSG00000020644 ENSMUST00000222667 Id2 protein_coding Interval_142367 chr6 141029779 141030435 + 0 NA intron (ENSMUSG00000107638.2, intron 2 of 3) lincRNA-intron (ENSMUSG00000107638.2, intron 2 of 3) -21822 ENSMUSG00000107613.1 ENSMUSG00000107613 ENSMUST00000204599 Gm43927 processed_pseudogene Interval_78728 chr18 19554111 19554308 + 0 NA intron (ENSMUSG00000117407.1, intron 1 of 2) transcribed_processed_pseudogene-intron (ENSMUSG00000117407.1, intron 1 of 2) 751 ENSMUSG00000117407.1 ENSMUSG00000117407 ENSMUST00000234168 Gm7720 transcribed_processed_pseudogene Interval_169951 chr9 103162060 103162366 + 0 NA intron (ENSMUSG00000032549.7, intron 3 of 3) protein_coding-intron (ENSMUSG00000032549.7, intron 4 of 7) 30099 ENSMUSG00000032553.14 ENSMUSG00000032553 ENSMUST00000190760 Srprb protein_coding Interval_127340 chr5 103210847 103211435 + 0 NA promoter-TSS (ENSMUSG00000046709.18) protein_coding-promoter-TSS (ENSMUSG00000046709.18) 193 ENSMUSG00000046709.18 ENSMUSG00000046709 ENSMUST00000136595 Mapk10 protein_coding Interval_5675 chr1 90840317 90840702 + 0 NA intron (ENSMUSG00000048126.16, intron 1 of 40) protein_coding-intron (ENSMUSG00000048126.16, intron 1 of 43) -1376 ENSMUSG00000103061.1 ENSMUSG00000103061 ENSMUST00000193688 Gm36970 TEC Interval_100983 chr2 173810234 173810424 + 0 NA intron (ENSMUSG00000085938.1, intron 1 of 4) unprocessed_pseudogene-intron (ENSMUSG00000085938.1, intron 1 of 4) 37341 ENSMUSG00000085938.1 ENSMUSG00000085938 ENSMUST00000138925 Gm14371 unprocessed_pseudogene Interval_171399 chr9 117484336 117485403 + 0 NA intron (ENSMUSG00000039607.17, intron 1 of 14) protein_coding-intron (ENSMUSG00000039607.17, intron 1 of 14) 81890 ENSMUSG00000092504.1 ENSMUSG00000092504 ENSMUST00000173358 Gm20396 processed_pseudogene Interval_139929 chr6 112836688 112837965 + 0 NA intron (ENSMUSG00000030257.16, intron 1 of 21) protein_coding-intron (ENSMUSG00000030257.16, intron 1 of 9) -7867 ENSMUSG00000030257.16 ENSMUSG00000030257 ENSMUST00000143475 Srgap3 protein_coding Interval_91506 chr2 39691743 39692396 + 0 NA Intergenic Intergenic -31926 ENSMUSG00000107699.1 ENSMUSG00000107699 ENSMUST00000204346 Gm43970 TEC Interval_131643 chr5 139039569 139040734 + 0 NA intron (ENSMUSG00000025855.13, intron 8 of 10) protein_coding-intron (ENSMUSG00000025855.13, intron 8 of 10) 45095 ENSMUSG00000075585.3 ENSMUSG00000075585 ENSMUST00000187923 6330403L08Rik antisense Interval_156741 chr8 57765737 57766753 + 0 NA Intergenic Intergenic 66471 ENSMUSG00000110162.1 ENSMUSG00000110162 ENSMUST00000209274 Gm45356 lincRNA Interval_156520 chr8 49194280 49195539 + 0 NA Intergenic Intergenic 37060 ENSMUSG00000110465.1 ENSMUSG00000110465 ENSMUST00000212762 Gm45832 TEC Interval_141094 chr6 124930497 124932177 + 0 NA promoter-TSS (ENSMUSG00000030120.14) protein_coding-promoter-TSS (ENSMUSG00000030120.14) -68 ENSMUSG00000030120.14 ENSMUSG00000030120 ENSMUST00000203060 Mlf2 protein_coding Interval_45160 chr13 52849468 52850755 + 0 NA intron (ENSMUSG00000021460.17, intron 5 of 9) protein_coding-intron (ENSMUSG00000021460.17, intron 6 of 9) 62835 ENSMUSG00000021460.17 ENSMUSG00000021460 ENSMUST00000151469 Auh protein_coding Interval_162337 chr8 127252046 127252598 + 0 NA intron (ENSMUSG00000025812.18, intron 1 of 1) protein_coding-intron (ENSMUSG00000025812.18, intron 2 of 23) 80918 ENSMUSG00000025812.18 ENSMUSG00000025812 ENSMUST00000159940 Pard3 protein_coding Interval_140185 chr6 115070406 115070611 + 0 NA Intergenic Intergenic -29046 ENSMUSG00000089134.1 ENSMUSG00000089134 ENSMUST00000158509 Gm24767 miRNA Interval_20307 chr10 116776927 116777624 + 0 NA intron (ENSMUSG00000034057.8, intron 23 of 24) protein_coding-intron (ENSMUSG00000034057.8, intron 23 of 24) 48022 ENSMUSG00000112924.1 ENSMUSG00000112924 ENSMUST00000218193 4930579P08Rik lincRNA Interval_73044 chr17 34349403 34350833 + 0 NA Intergenic Intergenic -4704 ENSMUSG00000024340.15 ENSMUSG00000024340 ENSMUST00000025198 Btnl2 protein_coding Interval_39647 chr12 91766251 91766650 + 0 NA intron (ENSMUSG00000020961.15, intron 1 of 6) protein_coding-intron (ENSMUSG00000020961.15, intron 1 of 6) 4720 ENSMUSG00000020961.15 ENSMUSG00000020961 ENSMUST00000166008 Ston2 protein_coding Interval_112814 chr4 45243369 45243607 + 0 NA intron (ENSMUSG00000086284.1, intron 1 of 2) protein_coding-intron (ENSMUSG00000035615.12, intron 2 of 15) 502 ENSMUSG00000086284.1 ENSMUSG00000086284 ENSMUST00000134640 Frmpd1os antisense Interval_162734 chr9 8138734 8138943 + 0 NA Intergenic Intergenic -3703 ENSMUSG00000111353.1 ENSMUSG00000111353 ENSMUST00000213229 Gm19324 unprocessed_pseudogene Interval_167701 chr9 72143736 72144116 + 0 NA Intergenic Intergenic 15339 ENSMUSG00000099253.1 ENSMUSG00000099253 ENSMUST00000184700 Gm7863 processed_pseudogene Interval_117894 chr4 126914591 126915177 + 0 NA TTS (ENSMUSG00000042446.16) protein_coding-TTS (ENSMUSG00000042446.16) 53015 ENSMUSG00000042446.16 ENSMUSG00000042446 ENSMUST00000123597 Zmym4 protein_coding Interval_86890 chr19 44659295 44659914 + 0 NA Intergenic Intergenic 35856 ENSMUSG00000097683.2 ENSMUSG00000097683 ENSMUST00000181365 Gm26644 lincRNA Interval_70413 chr17 9916969 9917671 + 0 NA Intergenic Intergenic 12447 ENSMUSG00000117227.1 ENSMUSG00000117227 ENSMUST00000232911 Gm34799 lincRNA Interval_77166 chr17 87024703 87025900 + 0 NA promoter-TSS (ENSMUSG00000024146.9) protein_coding-promoter-TSS (ENSMUSG00000024146.9) 105 ENSMUSG00000024145.6 ENSMUSG00000024145 ENSMUST00000024957 Pigf protein_coding Interval_126061 chr5 77167403 77168111 + 0 NA Intergenic Intergenic -27505 ENSMUSG00000106783.1 ENSMUSG00000106783 ENSMUST00000201649 Chaer1 lincRNA Interval_73364 chr17 36763983 36764540 + 0 NA Intergenic Intergenic -1838 ENSMUSG00000092460.1 ENSMUSG00000092460 ENSMUST00000173552 Gm8878 processed_pseudogene Interval_106666 chr3 98296063 98296453 + 0 NA exon (ENSMUSG00000027875.12, exon 3 of 10) protein_coding-exon (ENSMUSG00000027875.12, exon 3 of 10) 9270 ENSMUSG00000105909.1 ENSMUSG00000105909 ENSMUST00000196040 Gm43189 sense_intronic Interval_26066 chr11 53873864 53874952 + 0 NA intron (ENSMUSG00000018900.7, intron 2 of 2) protein_coding-intron (ENSMUSG00000018900.7, intron 4 of 9) -2731 ENSMUSG00000018900.7 ENSMUSG00000018900 ENSMUST00000136307 Slc22a5 protein_coding Interval_144589 chr7 26636840 26637380 + 0 NA Intergenic Intergenic -18646 ENSMUSG00000091924.2 ENSMUSG00000091924 ENSMUST00000171039 Vmn1r185 protein_coding Interval_85121 chr19 23017751 23018024 + 0 NA intron (ENSMUSG00000097930.2, intron 1 of 1) lincRNA-intron (ENSMUSG00000097930.2, intron 1 of 1) -43567 ENSMUSG00000118155.1 ENSMUSG00000118155 ENSMUST00000235686 Gm50136 lincRNA Interval_173511 chrX 97072510 97072725 + 0 NA promoter-TSS (ENSMUSG00000031212.3) protein_coding-promoter-TSS (ENSMUSG00000031212.3) 21 ENSMUSG00000031212.3 ENSMUSG00000031212 ENSMUST00000033556 Pgr15l protein_coding Interval_145325 chr7 33633187 33633362 + 0 NA intron (ENSMUSG00000083896.8, intron 1 of 2) transcribed_unprocessed_pseudogene-intron (ENSMUSG00000083896.8, intron 1 of 2) -1890 ENSMUSG00000079893.3 ENSMUSG00000079893 ENSMUST00000116009 Scgb1b23-ps unprocessed_pseudogene Interval_6458 chr1 109871469 109872222 + 0 NA Intergenic Intergenic 38821 ENSMUSG00000100025.1 ENSMUSG00000100025 ENSMUST00000190856 Gm8141 processed_pseudogene Interval_168160 chr9 77625347 77625669 + 0 NA Intergenic Intergenic -10992 ENSMUSG00000044938.8 ENSMUSG00000044938 ENSMUST00000057781 Klhl31 protein_coding Interval_27047 chr11 62544077 62544814 + 0 NA Intergenic Intergenic -5816 ENSMUSG00000018509.8 ENSMUSG00000018509 ENSMUST00000138772 Cenpv protein_coding Interval_56087 chr14 105510027 105510741 + 0 NA Intergenic Intergenic -7712 ENSMUSG00000115386.1 ENSMUSG00000115386 ENSMUST00000226350 Gm35909 lincRNA Interval_70173 chr17 5958592 5959629 + 0 NA intron (ENSMUSG00000023805.17, intron 1 of 25) protein_coding-intron (ENSMUSG00000023805.17, intron 1 of 25) 20023 ENSMUSG00000116734.1 ENSMUSG00000116734 ENSMUST00000231634 Gm8376 processed_pseudogene Interval_55490 chr14 88701271 88701509 + 0 NA intron (ENSMUSG00000115623.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000115623.1, intron 1 of 2) 65357 ENSMUSG00000115623.1 ENSMUSG00000115623 ENSMUST00000227074 Gm41225 lincRNA Interval_2100 chr1 36424547 36424743 + 0 NA exon (ENSMUSG00000001143.13, exon 3 of 3) protein_coding-exon (ENSMUSG00000001143.13, exon 3 of 3) 20612 ENSMUSG00000001143.13 ENSMUSG00000001143 ENSMUST00000193502 Lman2l protein_coding Interval_66261 chr16 32705663 32705974 + 0 NA Intergenic Intergenic -20848 ENSMUSG00000098225.1 ENSMUSG00000098225 ENSMUST00000182938 Gm9556 processed_pseudogene Interval_106124 chr3 93422201 93422402 + 0 NA promoter-TSS (ENSMUSG00000104171.1) processed_pseudogene-promoter-TSS (ENSMUSG00000104171.1) -873 ENSMUSG00000104171.1 ENSMUSG00000104171 ENSMUST00000192475 Gm18296 processed_pseudogene Interval_1579 chr1 27464555 27464761 + 0 NA Intergenic Intergenic -127890 ENSMUSG00000100310.1 ENSMUSG00000100310 ENSMUST00000188432 Gm19641 processed_pseudogene Interval_123707 chr5 34636305 34637600 + 0 NA promoter-TSS (ENSMUSG00000001082.12) protein_coding-promoter-TSS (ENSMUSG00000001082.12) -1427 ENSMUSG00000001082.12 ENSMUSG00000001082 ENSMUST00000124668 Mfsd10 protein_coding Interval_53917 chr14 63379105 63379281 + 0 NA intron (ENSMUSG00000014453.4, intron 9 of 12) protein_coding-intron (ENSMUSG00000014453.4, intron 9 of 12) -2775 ENSMUSG00000014453.4 ENSMUSG00000014453 ENSMUST00000224965 Blk protein_coding Interval_34926 chr12 13532571 13533149 + 0 NA intron (ENSMUSG00000020576.10, intron 4 of 6) protein_coding-intron (ENSMUSG00000020576.10, intron 47 of 51) -24892 ENSMUSG00000096633.1 ENSMUSG00000096633 ENSMUST00000097247 Gm22170 snRNA Interval_8110 chr1 135779034 135779633 + 0 NA promoter-TSS (ENSMUSG00000026418.16) protein_coding-promoter-TSS (ENSMUSG00000026418.16) -101 ENSMUSG00000026418.16 ENSMUSG00000026418 ENSMUST00000129217 Tnni1 protein_coding Interval_135064 chr6 35107581 35108684 + 0 NA intron (ENSMUSG00000038784.13, intron 1 of 10) protein_coding-intron (ENSMUSG00000038784.13, intron 1 of 10) 25555 ENSMUSG00000038784.13 ENSMUSG00000038784 ENSMUST00000202666 Cnot4 protein_coding Interval_50796 chr14 19896272 19896648 + 0 NA intron (ENSMUSG00000043004.13, intron 1 of 2) protein_coding-intron (ENSMUSG00000043004.13, intron 4 of 5) 29480 ENSMUSG00000114436.1 ENSMUSG00000114436 ENSMUST00000224546 Gm48283 lincRNA Interval_128591 chr5 114199562 114200935 + 0 NA exon (ENSMUSG00000042010.16, exon 13 of 52) protein_coding-exon (ENSMUSG00000042010.16, exon 13 of 52) 24342 ENSMUSG00000042010.16 ENSMUSG00000042010 ENSMUST00000142489 Acacb protein_coding Interval_129790 chr5 122371682 122372906 + 0 NA promoter-TSS (ENSMUSG00000029463.5) protein_coding-promoter-TSS (ENSMUSG00000029463.5) 70 ENSMUSG00000029463.5 ENSMUSG00000029463 ENSMUST00000031419 Fam216a protein_coding Interval_5177 chr1 86268582 86269767 + 0 NA TTS (ENSMUSG00000062590.13) protein_coding-TTS (ENSMUSG00000062590.13) 32201 ENSMUSG00000087538.1 ENSMUSG00000087538 ENSMUST00000126385 Gm16341 antisense Interval_68365 chr16 74417354 74417562 + 0 NA Intergenic Intergenic -75391 ENSMUSG00000104758.1 ENSMUSG00000104758 ENSMUST00000199719 Mir691 miRNA Interval_151193 chr7 119333345 119333737 + 0 NA Intergenic Intergenic -27293 ENSMUSG00000077653.1 ENSMUSG00000077653 ENSMUST00000104465 Gm23321 snoRNA Interval_50571 chr14 15787117 15787424 + 0 NA intron (ENSMUSG00000114586.1, intron 5 of 5) lincRNA-intron (ENSMUSG00000114794.1, intron 3 of 3) 13581 ENSMUSG00000114586.1 ENSMUSG00000114586 ENSMUST00000225565 Gm31804 lincRNA Interval_122215 chr5 20104365 20105330 + 0 NA intron (ENSMUSG00000040003.18, intron 3 of 3) protein_coding-intron (ENSMUSG00000040003.18, intron 3 of 22) 9600 ENSMUSG00000077171.1 ENSMUSG00000077171 ENSMUST00000103983 Gm25761 snoRNA Interval_9529 chr1 158653884 158654851 + 0 NA intron (ENSMUSG00000026587.15, intron 16 of 21) protein_coding-intron (ENSMUSG00000026587.15, intron 16 of 22) -100068 ENSMUSG00000103971.1 ENSMUSG00000103971 ENSMUST00000192868 Gm37679 antisense Interval_22843 chr11 16576778 16577648 + 0 NA Intergenic Intergenic 58853 ENSMUSG00000101316.1 ENSMUSG00000101316 ENSMUST00000118481 Gm12663 processed_pseudogene Interval_95177 chr2 104569943 104570898 + 0 NA intron (ENSMUSG00000086454.7, intron 3 of 3) processed_transcript-intron (ENSMUSG00000086454.7, intron 3 of 3) 3223 ENSMUSG00000086454.7 ENSMUSG00000086454 ENSMUST00000150581 Platr14 processed_transcript Interval_105301 chr3 84687370 84687629 + 0 NA intron (ENSMUSG00000056498.13, intron 3 of 6) protein_coding-intron (ENSMUSG00000056498.13, intron 3 of 6) 21289 ENSMUSG00000056498.13 ENSMUSG00000056498 ENSMUST00000128344 Tmem154 protein_coding Interval_159198 chr8 91599089 91600116 + 0 NA intron (ENSMUSG00000055932.15, intron 5 of 5) protein_coding-intron (ENSMUSG00000055932.15, intron 8 of 8) 20314 ENSMUSG00000110068.1 ENSMUSG00000110068 ENSMUST00000210685 Gm45294 TEC Interval_59215 chr15 48810737 48811019 + 0 NA Intergenic Intergenic -18815 ENSMUSG00000022311.15 ENSMUSG00000022311 ENSMUST00000160655 Csmd3 protein_coding Interval_5114 chr1 85770914 85771507 + 0 NA intron (ENSMUSG00000052760.16, intron 3 of 7) protein_coding-intron (ENSMUSG00000052760.16, intron 3 of 7) -4061 ENSMUSG00000100217.1 ENSMUSG00000100217 ENSMUST00000187270 9930111H07Rik lincRNA Interval_21911 chr11 5144327 5144660 + 0 NA intron (ENSMUSG00000034164.17, intron 1 of 14) protein_coding-intron (ENSMUSG00000034164.17, intron 1 of 14) 7747 ENSMUSG00000034164.17 ENSMUSG00000034164 ENSMUST00000138551 Emid1 protein_coding Interval_11448 chr1 181975477 181976450 + 0 NA intron (ENSMUSG00000022995.16, intron 1 of 13) protein_coding-intron (ENSMUSG00000022995.16, intron 1 of 14) -6040 ENSMUSG00000103317.1 ENSMUSG00000103317 ENSMUST00000191884 Gm38359 TEC Interval_106827 chr3 101136298 101136964 + 0 NA Intergenic Intergenic -49238 ENSMUSG00000105717.1 ENSMUSG00000105717 ENSMUST00000200367 Gm43465 sense_intronic Interval_89740 chr2 25156958 25158120 + 0 NA intron (ENSMUSG00000118563.1, intron 12 of 13) unitary_pseudogene-intron (ENSMUSG00000118563.1, intron 12 of 13) -12216 ENSMUSG00000087028.7 ENSMUSG00000087028 ENSMUST00000149619 Gm13387 lincRNA Interval_111777 chr4 28534709 28534880 + 0 NA Intergenic Intergenic 25912 ENSMUSG00000081579.1 ENSMUSG00000081579 ENSMUST00000121424 Gm11909 processed_pseudogene Interval_103725 chr3 52059265 52059461 + 0 NA exon (ENSMUSG00000104339.1, exon 1 of 1) TEC-exon (ENSMUSG00000104339.1, exon 1 of 1) 4881 ENSMUSG00000104339.1 ENSMUSG00000104339 ENSMUST00000194534 C130089K02Rik TEC Interval_170496 chr9 108316694 108317702 + 0 NA intron (ENSMUSG00000007815.13, intron 2 of 5) protein_coding-intron (ENSMUSG00000007815.13, intron 2 of 5) 10401 ENSMUSG00000007815.13 ENSMUSG00000007815 ENSMUST00000193424 Rhoa protein_coding Interval_81486 chr18 61064840 61066229 + 0 NA intron (ENSMUSG00000024620.11, intron 7 of 23) protein_coding-intron (ENSMUSG00000024620.11, intron 6 of 22) 20334 ENSMUSG00000024620.11 ENSMUSG00000024620 ENSMUST00000115274 Pdgfrb protein_coding Interval_146707 chr7 49587624 49587905 + 0 NA TTS (ENSMUSG00000052512.17) protein_coding-TTS (ENSMUSG00000052512.17) 49085 ENSMUSG00000030507.6 ENSMUSG00000030507 ENSMUST00000032717 Dbx1 protein_coding Interval_76304 chr17 78924260 78924714 + 0 NA exon (ENSMUSG00000024081.9, exon 9 of 16) protein_coding-exon (ENSMUSG00000024081.9, exon 9 of 16) 1497 ENSMUSG00000024081.9 ENSMUSG00000024081 ENSMUST00000232899 Cebpz protein_coding Interval_111227 chr4 15172568 15172751 + 0 NA Intergenic Intergenic 18267 ENSMUSG00000083073.1 ENSMUSG00000083073 ENSMUST00000117886 Gm11845 processed_pseudogene Interval_173847 chrX 105928247 105929834 + 0 NA promoter-TSS (ENSMUSG00000031229.16) protein_coding-promoter-TSS (ENSMUSG00000031229.16) -53735 ENSMUSG00000031229.16 ENSMUSG00000031229 ENSMUST00000126345 Atrx protein_coding Interval_1307 chr1 19975049 19975907 + 0 NA Intergenic Intergenic 90070 ENSMUSG00000104095.1 ENSMUSG00000104095 ENSMUST00000194347 Gm37315 TEC Interval_51915 chr14 33913845 33914190 + 0 NA Intergenic Intergenic -9570 ENSMUSG00000021943.7 ENSMUSG00000021943 ENSMUST00000168727 Gdf10 protein_coding Interval_122086 chr5 16718849 16719266 + 0 NA Intergenic Intergenic 12013 ENSMUSG00000059179.6 ENSMUSG00000059179 ENSMUST00000073014 Gm8991 processed_pseudogene Interval_141180 chr6 125446415 125448221 + 0 NA Intergenic Intergenic 15706 ENSMUSG00000030342.8 ENSMUSG00000030342 ENSMUST00000140024 Cd9 protein_coding Interval_18472 chr10 86441238 86442540 + 0 NA intron (ENSMUSG00000059602.14, intron 3 of 8) protein_coding-intron (ENSMUSG00000059602.14, intron 3 of 13) 50008 ENSMUSG00000059602.14 ENSMUSG00000059602 ENSMUST00000139197 Syn3 protein_coding Interval_37946 chr12 73245906 73246211 + 0 NA intron (ENSMUSG00000021103.12, intron 6 of 6) protein_coding-intron (ENSMUSG00000021103.12, intron 7 of 7) 40652 ENSMUSG00000034442.11 ENSMUSG00000034442 ENSMUST00000221189 Trmt5 protein_coding Interval_64120 chr16 8545083 8545455 + 0 NA intron (ENSMUSG00000057880.12, intron 1 of 2) protein_coding-intron (ENSMUSG00000057880.12, intron 1 of 15) -38358 ENSMUSG00000057880.12 ENSMUSG00000057880 ENSMUST00000128459 Abat protein_coding Interval_5152 chr1 86064059 86065407 + 0 NA promoter-TSS (ENSMUSG00000026229.17) protein_coding-promoter-TSS (ENSMUSG00000026229.17) 92 ENSMUSG00000026229.17 ENSMUSG00000026229 ENSMUST00000149946 Psmd1 protein_coding Interval_117261 chr4 121097604 121098584 + 0 NA exon (ENSMUSG00000043207.10, exon 1 of 10) protein_coding-exon (ENSMUSG00000043207.10, exon 1 of 10) 11132 ENSMUSG00000078577.3 ENSMUSG00000078577 ENSMUST00000106268 Tmco2 protein_coding Interval_101927 chr3 11687913 11688463 + 0 NA Intergenic Intergenic -28678 ENSMUSG00000098085.1 ENSMUSG00000098085 ENSMUST00000182028 Gm8919 processed_pseudogene Interval_27654 chr11 69314930 69316212 + 0 NA promoter-TSS (ENSMUSG00000032782.19) protein_coding-promoter-TSS (ENSMUSG00000032782.19) 3896 ENSMUSG00000032782.19 ENSMUSG00000032782 ENSMUST00000176111 Cntrob protein_coding Interval_39954 chr12 100098009 100098511 + 0 NA Intergenic Intergenic -1042 ENSMUSG00000113268.1 ENSMUSG00000113268 ENSMUST00000223195 4930477G07Rik lincRNA Interval_15592 chr10 52021914 52023327 + 0 NA exon (ENSMUSG00000049641.15, exon 1 of 3) protein_coding-exon (ENSMUSG00000049641.15, exon 1 of 3) 118 ENSMUSG00000049641.15 ENSMUSG00000049641 ENSMUST00000163017 Vgll2 protein_coding Interval_131016 chr5 134566785 134568462 + 0 NA Intergenic Intergenic -4453 ENSMUSG00000106323.1 ENSMUSG00000106323 ENSMUST00000196812 Mir7228 miRNA Interval_77096 chr17 86496395 86496837 + 0 NA TTS (ENSMUSG00000045038.14) protein_coding-TTS (ENSMUSG00000045038.14) 6054 ENSMUSG00000045038.14 ENSMUSG00000045038 ENSMUST00000136986 Prkce protein_coding Interval_66806 chr16 37788114 37789017 + 0 NA intron (ENSMUSG00000022816.11, intron 1 of 2) protein_coding-intron (ENSMUSG00000022816.11, intron 2 of 10) 11510 ENSMUSG00000022816.11 ENSMUSG00000022816 ENSMUST00000123077 Fstl1 protein_coding Interval_152927 chr7 139827803 139828257 + 0 NA Intergenic Intergenic -6335 ENSMUSG00000025475.17 ENSMUSG00000025475 ENSMUST00000129454 Adgra1 protein_coding Interval_108607 chr3 129540953 129541982 + 0 NA intron (ENSMUSG00000041220.10, intron 1 of 3) protein_coding-intron (ENSMUSG00000041220.10, intron 2 of 4) 3326 ENSMUSG00000106092.1 ENSMUSG00000106092 ENSMUST00000200283 Gm43072 TEC Interval_27971 chr11 71737077 71737475 + 0 NA Intergenic Intergenic 3171 ENSMUSG00000085251.1 ENSMUSG00000085251 ENSMUST00000152957 Gm12326 lincRNA Interval_154359 chr8 14967514 14968320 + 0 NA intron (ENSMUSG00000071176.10, intron 9 of 18) protein_coding-intron (ENSMUSG00000071176.10, intron 18 of 28) -6331 ENSMUSG00000090024.1 ENSMUSG00000090024 ENSMUST00000162958 Gm16350 antisense Interval_106636 chr3 97964907 97965126 + 0 NA intron (ENSMUSG00000074388.3, intron 1 of 1) lincRNA-intron (ENSMUSG00000074388.3, intron 1 of 1) 34843 ENSMUSG00000074388.3 ENSMUSG00000074388 ENSMUST00000098828 Gm5544 lincRNA Interval_49509 chr13 112517151 112517334 + 0 NA Intergenic Intergenic 42196 ENSMUSG00000021756.12 ENSMUSG00000021756 ENSMUST00000184949 Il6st protein_coding Interval_171682 chr9 120126779 120128202 + 0 NA promoter-TSS (ENSMUSG00000032518.6) protein_coding-promoter-TSS (ENSMUSG00000032518.6) -299 ENSMUSG00000032518.6 ENSMUSG00000032518 ENSMUST00000217352 Rpsa protein_coding Interval_94074 chr2 83665237 83665515 + 0 NA TTS (ENSMUSG00000027091.14) protein_coding-TTS (ENSMUSG00000027091.14) 8756 ENSMUSG00000027091.14 ENSMUSG00000027091 ENSMUST00000134789 Zc3h15 protein_coding Interval_145684 chr7 37361658 37362324 + 0 NA intron (ENSMUSG00000043456.17, intron 3 of 3) protein_coding-intron (ENSMUSG00000043456.17, intron 3 of 3) 4639 ENSMUSG00000108507.1 ENSMUSG00000108507 ENSMUST00000206785 6720469O03Rik TEC Interval_150539 chr7 112171905 112172444 + 0 NA Intergenic Intergenic -13117 ENSMUSG00000030772.6 ENSMUSG00000030772 ENSMUST00000033036 Dkk3 protein_coding Interval_145100 chr7 30025075 30026540 + 0 NA TTS (ENSMUSG00000074221.12) protein_coding-TTS (ENSMUSG00000074221.12) 25573 ENSMUSG00000053985.10 ENSMUSG00000053985 ENSMUST00000077787 Zfp14 protein_coding Interval_86477 chr19 40935312 40937057 + 0 NA intron (ENSMUSG00000061132.13, intron 15 of 16) protein_coding-intron (ENSMUSG00000061132.13, intron 15 of 16) 41479 ENSMUSG00000049164.7 ENSMUSG00000049164 ENSMUST00000235207 Zfp518a protein_coding Interval_173190 chrX 73973494 73973958 + 0 NA Intergenic Intergenic -26294 ENSMUSG00000031386.14 ENSMUSG00000031386 ENSMUST00000128325 Hcfc1 protein_coding Interval_67418 chr16 48496471 48498832 + 0 NA intron (ENSMUSG00000022652.7, intron 2 of 8) protein_coding-intron (ENSMUSG00000022652.7, intron 9 of 26) 18019 ENSMUSG00000022652.7 ENSMUSG00000022652 ENSMUST00000232195 Morc1 protein_coding Interval_123711 chr5 34659617 34661151 + 0 NA promoter-TSS (ENSMUSG00000052783.16) protein_coding-promoter-TSS (ENSMUSG00000052783.16) 9666 ENSMUSG00000085166.1 ENSMUSG00000085166 ENSMUST00000134467 Gm15522 antisense Interval_174349 chrX 147206301 147206966 + 0 NA Intergenic Intergenic 48423 ENSMUSG00000065450.1 ENSMUSG00000065450 ENSMUST00000083516 Mir448 miRNA Interval_75086 chr17 63176263 63177759 + 0 NA intron (ENSMUSG00000023965.13, intron 4 of 5) protein_coding-intron (ENSMUSG00000023965.13, intron 7 of 8) -25727 ENSMUSG00000088853.1 ENSMUSG00000088853 ENSMUST00000158228 Gm24730 snoRNA Interval_162691 chr9 7845077 7845656 + 0 NA Intergenic Intergenic -8561 ENSMUSG00000057367.12 ENSMUSG00000057367 ENSMUST00000054878 Birc2 protein_coding Interval_67752 chr16 56867800 56868954 + 0 NA promoter-TSS (ENSMUSG00000022754.6) protein_coding-promoter-TSS (ENSMUSG00000022754.6) -662 ENSMUSG00000022754.6 ENSMUSG00000022754 ENSMUST00000135672 Tmem45a protein_coding Interval_100515 chr2 169803874 169804809 + 0 NA intron (ENSMUSG00000047907.11, intron 1 of 2) protein_coding-intron (ENSMUSG00000047907.11, intron 1 of 1) -80552 ENSMUSG00000047907.11 ENSMUSG00000047907 ENSMUST00000140699 Tshz2 protein_coding Interval_24745 chr11 36547722 36549241 + 0 NA intron (ENSMUSG00000049336.16, intron 2 of 28) protein_coding-intron (ENSMUSG00000049336.16, intron 2 of 28) -174401 ENSMUSG00000065173.1 ENSMUSG00000065173 ENSMUST00000083239 Gm22127 snRNA Interval_172942 chrX 56880807 56881220 + 0 NA intron (ENSMUSG00000053852.11, intron 2 of 22) protein_coding-intron (ENSMUSG00000053852.11, intron 1 of 22) -32408 ENSMUSG00000053852.11 ENSMUSG00000053852 ENSMUST00000145035 Adgrg4 protein_coding Interval_105520 chr3 87221530 87222272 + 0 NA Intergenic Intergenic -13896 ENSMUSG00000074506.4 ENSMUSG00000074506 ENSMUST00000098980 Gm10705 processed_pseudogene Interval_37372 chr12 65659970 65660711 + 0 NA Intergenic Intergenic 94250 ENSMUSG00000077270.1 ENSMUSG00000077270 ENSMUST00000104082 Gm22782 snoRNA Interval_85229 chr19 24030121 24031587 + 0 NA exon (ENSMUSG00000071604.5, exon 1 of 11) protein_coding-exon (ENSMUSG00000071604.5, exon 1 of 11) 26074 ENSMUSG00000117820.1 ENSMUSG00000117820 ENSMUST00000235965 Gm50305 processed_pseudogene Interval_104435 chr3 65642529 65643795 + 0 NA Intergenic Intergenic -16126 ENSMUSG00000098944.1 ENSMUSG00000098944 ENSMUST00000185035 Mir8120 miRNA Interval_166834 chr9 63103262 63103642 + 0 NA Intergenic Intergenic -13749 ENSMUSG00000111297.1 ENSMUSG00000111297 ENSMUST00000215204 Gm6082 processed_pseudogene Interval_131800 chr5 139964850 139965887 + 0 NA intron (ENSMUSG00000048988.8, intron 1 of 1) protein_coding-intron (ENSMUSG00000048988.8, intron 1 of 1) -1577 ENSMUSG00000106090.1 ENSMUSG00000106090 ENSMUST00000196164 Gm43704 processed_pseudogene Interval_96924 chr2 129573774 129574976 + 0 NA Intergenic Intergenic -8307 ENSMUSG00000087015.1 ENSMUSG00000087015 ENSMUST00000150181 Gm14041 antisense Interval_20861 chr10 121590807 121591131 + 0 NA intron (ENSMUSG00000034667.8, intron 3 of 3) protein_coding-intron (ENSMUSG00000034667.8, intron 24 of 24) 9844 ENSMUSG00000034667.8 ENSMUSG00000034667 ENSMUST00000217865 Xpot protein_coding Interval_87332 chr19 47754084 47756287 + 0 NA promoter-TSS (ENSMUSG00000099069.1) miRNA-promoter-TSS (ENSMUSG00000099069.1) -28 ENSMUSG00000099069.1 ENSMUSG00000099069 ENSMUST00000185078 Mir8090 miRNA Interval_38851 chr12 83411347 83412576 + 0 NA intron (ENSMUSG00000021221.15, intron 1 of 10) protein_coding-intron (ENSMUSG00000021221.15, intron 1 of 8) 75755 ENSMUSG00000021221.15 ENSMUSG00000021221 ENSMUST00000177801 Dpf3 protein_coding Interval_62253 chr15 89177233 89177823 + 0 NA intron (ENSMUSG00000036606.17, intron 1 of 37) protein_coding-intron (ENSMUSG00000036606.17, intron 1 of 37) 8009 ENSMUSG00000098663.1 ENSMUSG00000098663 ENSMUST00000184207 Mir6958 miRNA Interval_54013 chr14 64455376 64455749 + 0 NA intron (ENSMUSG00000054733.9, intron 1 of 10) protein_coding-intron (ENSMUSG00000054733.9, intron 1 of 10) -38614 ENSMUSG00000054733.9 ENSMUSG00000054733 ENSMUST00000209513 Msra protein_coding Interval_172710 chrX 45011062 45011787 + 0 NA Intergenic Intergenic -79480 ENSMUSG00000037086.3 ENSMUSG00000037086 ENSMUST00000040002 Prr32 protein_coding Interval_35960 chr12 32855442 32855694 + 0 NA Intergenic Intergenic -22737 ENSMUSG00000112166.1 ENSMUSG00000112166 ENSMUST00000219636 Gm47948 lincRNA Interval_136835 chr6 61155440 61155644 + 0 NA Intergenic Intergenic -7635 ENSMUSG00000107652.1 ENSMUSG00000107652 ENSMUST00000203274 Gm43894 lincRNA Interval_158121 chr8 78914468 78914719 + 0 NA Intergenic Intergenic 39321 ENSMUSG00000110094.1 ENSMUSG00000110094 ENSMUST00000209234 Gm45326 lincRNA Interval_7653 chr1 132833792 132834660 + 0 NA Intergenic Intergenic -19878 ENSMUSG00000088911.1 ENSMUSG00000088911 ENSMUST00000158286 Gm22609 snoRNA Interval_107744 chr3 112739769 112740334 + 0 NA Intergenic Intergenic 26961 ENSMUSG00000106666.1 ENSMUSG00000106666 ENSMUST00000199590 Gm43587 processed_pseudogene Interval_21035 chr10 124699130 124699316 + 0 NA Intergenic Intergenic 146258 ENSMUSG00000112130.1 ENSMUSG00000112130 ENSMUST00000217909 Gm47839 lincRNA Interval_96230 chr2 120741645 120741829 + 0 NA intron (ENSMUSG00000090100.7, intron 15 of 15) protein_coding-intron (ENSMUSG00000090100.7, intron 15 of 15) -13099 ENSMUSG00000027284.16 ENSMUSG00000027284 ENSMUST00000136725 Cdan1 protein_coding Interval_45064 chr13 51823874 51824462 + 0 NA Intergenic Intergenic -22576 ENSMUSG00000021453.2 ENSMUSG00000021453 ENSMUST00000132480 Gadd45g protein_coding Interval_152038 chr7 128488393 128489704 + 0 NA exon (ENSMUSG00000108626.1, exon 4 of 5) lincRNA-exon (ENSMUSG00000108626.1, exon 4 of 5) -10910 ENSMUSG00000093125.1 ENSMUSG00000093125 ENSMUST00000175384 Gm24365 miRNA Interval_23608 chr11 23745737 23745977 + 0 NA intron (ENSMUSG00000020275.9, intron 5 of 9) protein_coding-intron (ENSMUSG00000020275.9, intron 5 of 9) 25113 ENSMUSG00000020275.9 ENSMUSG00000020275 ENSMUST00000102864 Rel protein_coding Interval_126730 chr5 92375506 92375820 + 0 NA intron (ENSMUSG00000034842.16, intron 2 of 3) protein_coding-intron (ENSMUSG00000034842.16, intron 2 of 9) -10178 ENSMUSG00000060183.6 ENSMUSG00000060183 ENSMUST00000077820 Cxcl11 polymorphic_pseudogene Interval_23751 chr11 25856853 25857766 + 0 NA intron (ENSMUSG00000032985.15, intron 2 of 2) protein_coding-intron (ENSMUSG00000032985.15, intron 2 of 6) -88168 ENSMUSG00000032985.15 ENSMUSG00000032985 ENSMUST00000125987 5730522E02Rik protein_coding Interval_4365 chr1 73125036 73126103 + 0 NA Intergenic Intergenic 83854 ENSMUSG00000102266.1 ENSMUSG00000102266 ENSMUST00000194107 Gm38106 TEC Interval_86007 chr19 34872510 34872755 + 0 NA intron (ENSMUSG00000033610.16, intron 1 of 6) protein_coding-intron (ENSMUSG00000033610.16, intron 1 of 6) 5221 ENSMUSG00000033610.16 ENSMUSG00000033610 ENSMUST00000237577 Pank1 protein_coding Interval_33149 chr11 114764584 114765922 + 0 NA promoter-TSS (ENSMUSG00000010021.13) protein_coding-promoter-TSS (ENSMUSG00000010021.13) -135 ENSMUSG00000010021.13 ENSMUSG00000010021 ENSMUST00000134165 Kif19a protein_coding Interval_2330 chr1 38106986 38107279 + 0 NA TTS (ENSMUSG00000026082.11) protein_coding-TTS (ENSMUSG00000026082.11) 22669 ENSMUSG00000026082.11 ENSMUSG00000026082 ENSMUST00000195383 Rev1 protein_coding Interval_168478 chr9 81863312 81864306 + 0 NA promoter-TSS (ENSMUSG00000043289.12) protein_coding-promoter-TSS (ENSMUSG00000043289.12) 104 ENSMUSG00000043289.12 ENSMUSG00000043289 ENSMUST00000189391 Mei4 protein_coding Interval_100403 chr2 168845701 168846660 + 0 NA Intergenic Intergenic 35988 ENSMUSG00000077761.1 ENSMUSG00000077761 ENSMUST00000104573 Gm25214 snoRNA Interval_152415 chr7 132882171 132882765 + 0 NA intron (ENSMUSG00000030965.19, intron 1 of 1) protein_coding-intron (ENSMUSG00000030965.19, intron 8 of 8) 6219 ENSMUSG00000097595.2 ENSMUSG00000097595 ENSMUST00000180905 1500002F19Rik processed_transcript Interval_53431 chr14 57390998 57391442 + 0 NA intron (ENSMUSG00000021947.11, intron 1 of 3) protein_coding-intron (ENSMUSG00000021947.11, intron 1 of 7) -5970 ENSMUSG00000114952.1 ENSMUSG00000114952 ENSMUST00000225457 Gm29717 processed_pseudogene Interval_124375 chr5 45019001 45019275 + 0 NA intron (ENSMUSG00000029092.9, intron 5 of 5) lincRNA-intron (ENSMUSG00000029092.9, intron 5 of 5) -34896 ENSMUSG00000067331.5 ENSMUSG00000067331 ENSMUST00000087431 Gm10205 pseudogene Interval_80322 chr18 39214666 39215578 + 0 NA intron (ENSMUSG00000036452.18, intron 12 of 22) protein_coding-intron (ENSMUSG00000036452.18, intron 12 of 22) -76313 ENSMUSG00000036452.18 ENSMUSG00000036452 ENSMUST00000133247 Arhgap26 protein_coding Interval_34273 chr11 121904039 121905334 + 0 NA Intergenic Intergenic -17718 ENSMUSG00000082947.1 ENSMUSG00000082947 ENSMUST00000120180 Gm12587 processed_pseudogene Interval_89152 chr2 17507577 17507812 + 0 NA intron (ENSMUSG00000053702.16, intron 2 of 9) protein_coding-intron (ENSMUSG00000053702.16, intron 4 of 6) -51366 ENSMUSG00000085100.1 ENSMUSG00000085100 ENSMUST00000148607 Gm13324 antisense Interval_172413 chrX 18258407 18259156 + 0 NA exon (ENSMUSG00000037369.17, exon 18 of 18) protein_coding-exon (ENSMUSG00000037369.17, exon 18 of 18) 11263 ENSMUSG00000037369.17 ENSMUSG00000037369 ENSMUST00000155161 Kdm6a protein_coding Interval_83051 chr18 80817289 80817585 + 0 NA intron (ENSMUSG00000024566.10, intron 10 of 27) protein_coding-intron (ENSMUSG00000024566.10, intron 11 of 29) -4810 ENSMUSG00000114891.1 ENSMUSG00000114891 ENSMUST00000225900 Gm47272 antisense Interval_39418 chr12 87298932 87301405 + 0 NA promoter-TSS (ENSMUSG00000050671.12) protein_coding-promoter-TSS (ENSMUSG00000050671.12) -13095 ENSMUSG00000050671.12 ENSMUSG00000050671 ENSMUST00000145714 Ism2 protein_coding Interval_131953 chr5 141042054 141044349 + 0 NA Intergenic Intergenic 13273 ENSMUSG00000104683.1 ENSMUSG00000104683 ENSMUST00000198781 Gm44385 miRNA Interval_75533 chr17 67819135 67819344 + 0 NA intron (ENSMUSG00000032796.8, intron 61 of 62) protein_coding-intron (ENSMUSG00000032796.8, intron 61 of 62) 31824 ENSMUSG00000090955.1 ENSMUSG00000090955 ENSMUST00000166414 Gm17097 processed_pseudogene Interval_174439 chrX 152302155 152302380 + 0 NA intron (ENSMUSG00000087403.9, intron 2 of 2) protein_coding-intron (ENSMUSG00000087403.9, intron 2 of 2) -1734 ENSMUSG00000084584.1 ENSMUSG00000084584 ENSMUST00000122635 n-R5s15 rRNA Interval_19438 chr10 99261303 99264268 + 0 NA promoter-TSS (ENSMUSG00000019960.8) protein_coding-promoter-TSS (ENSMUSG00000019960.8) -446 ENSMUSG00000019960.8 ENSMUSG00000019960 ENSMUST00000220218 Dusp6 protein_coding Interval_10625 chr1 172300331 172301554 + 0 NA intron (ENSMUSG00000038034.15, intron 3 of 8) protein_coding-intron (ENSMUSG00000038034.15, intron 3 of 8) -17818 ENSMUSG00000038034.15 ENSMUSG00000038034 ENSMUST00000150598 Igsf8 protein_coding Interval_28667 chr11 77652894 77654493 + 0 NA Intergenic Intergenic 5014 ENSMUSG00000077442.1 ENSMUSG00000077442 ENSMUST00000104254 Gm23132 snoRNA Interval_165436 chr9 47891834 47892215 + 0 NA Intergenic Intergenic 56137 ENSMUSG00000111668.1 ENSMUSG00000111668 ENSMUST00000215015 Gm47213 processed_pseudogene Interval_125367 chr5 66485969 66488511 + 0 NA intron (ENSMUSG00000029207.16, intron 2 of 3) protein_coding-intron (ENSMUSG00000029207.16, intron 3 of 17) 4932 ENSMUSG00000029207.16 ENSMUSG00000029207 ENSMUST00000159847 Apbb2 protein_coding Interval_90956 chr2 33712547 33712988 + 0 NA Intergenic Intergenic 6132 ENSMUSG00000085463.1 ENSMUSG00000085463 ENSMUST00000130532 9430024E24Rik lincRNA Interval_8201 chr1 136465324 136466703 + 0 NA promoter-TSS (ENSMUSG00000041498.13) protein_coding-promoter-TSS (ENSMUSG00000041498.13) -1922 ENSMUSG00000041498.13 ENSMUSG00000041498 ENSMUST00000195274 Kif14 protein_coding Interval_137575 chr6 73469188 73469745 + 0 NA promoter-TSS (ENSMUSG00000056197.6) protein_coding-promoter-TSS (ENSMUSG00000056197.6) 153 ENSMUSG00000056197.6 ENSMUSG00000056197 ENSMUST00000204006 4931417E11Rik protein_coding Interval_47607 chr13 89936978 89937413 + 0 NA intron (ENSMUSG00000021615.13, intron 7 of 7) protein_coding-intron (ENSMUSG00000021615.13, intron 7 of 7) -9652 ENSMUSG00000089070.1 ENSMUSG00000089070 ENSMUST00000158445 Gm24498 snRNA Interval_160803 chr8 112457834 112458422 + 0 NA Intergenic Intergenic 111447 ENSMUSG00000098075.1 ENSMUSG00000098075 ENSMUST00000182027 Gm26994 antisense Interval_111169 chr4 13783910 13785646 + 0 NA promoter-TSS (ENSMUSG00000006586.15) protein_coding-promoter-TSS (ENSMUSG00000006586.15) 33481 ENSMUSG00000006586.15 ENSMUSG00000006586 ENSMUST00000139736 Runx1t1 protein_coding Interval_97629 chr2 141230892 141231857 + 0 NA TTS (ENSMUSG00000074763.5) antisense-TTS (ENSMUSG00000074763.5) 996 ENSMUSG00000074763.5 ENSMUSG00000074763 ENSMUST00000178769 Macrod2os2 antisense Interval_158985 chr8 88453837 88455838 + 0 NA Intergenic Intergenic 63716 ENSMUSG00000110280.1 ENSMUSG00000110280 ENSMUST00000211701 Gm45497 processed_pseudogene Interval_99438 chr2 161079783 161080081 + 0 NA intron (ENSMUSG00000057133.14, intron 1 of 16) protein_coding-intron (ENSMUSG00000057133.14, intron 1 of 36) -29479 ENSMUSG00000109780.1 ENSMUSG00000109780 ENSMUST00000209874 Gm45447 antisense Interval_87827 chr19 56320206 56320789 + 0 NA TTS (ENSMUSG00000025075.14) protein_coding-TTS (ENSMUSG00000025075.14) 32501 ENSMUSG00000025075.14 ENSMUSG00000025075 ENSMUST00000165522 Habp2 protein_coding Interval_61705 chr15 83497389 83497770 + 0 NA intron (ENSMUSG00000022442.16, intron 7 of 11) protein_coding-intron (ENSMUSG00000022442.16, intron 7 of 11) 13214 ENSMUSG00000022442.16 ENSMUSG00000022442 ENSMUST00000154401 Ttll1 protein_coding Interval_43622 chr13 34162577 34163805 + 0 NA exon (ENSMUSG00000071451.10, exon 1 of 2) protein_coding-exon (ENSMUSG00000071451.10, exon 1 of 2) 227 ENSMUSG00000071451.10 ENSMUSG00000071451 ENSMUST00000147632 Psmg4 protein_coding Interval_172614 chrX 38438444 38438689 + 0 NA intron (ENSMUSG00000016534.15, intron 2 of 4) protein_coding-intron (ENSMUSG00000016534.15, intron 3 of 8) 17848 ENSMUSG00000016534.15 ENSMUSG00000016534 ENSMUST00000144663 Lamp2 protein_coding Interval_155271 chr8 29556531 29557320 + 0 NA Intergenic Intergenic -269944 ENSMUSG00000110331.1 ENSMUSG00000110331 ENSMUST00000209275 Nudc-ps1 processed_pseudogene Interval_92814 chr2 65845709 65846207 + 0 NA intron (ENSMUSG00000044647.16, intron 1 of 4) protein_coding-intron (ENSMUSG00000044647.16, intron 1 of 5) 14661 ENSMUSG00000052865.5 ENSMUSG00000052865 ENSMUST00000155722 Gm13619 antisense Interval_98374 chr2 151930218 151931004 + 0 NA intron (ENSMUSG00000027460.7, intron 4 of 8) protein_coding-intron (ENSMUSG00000027460.7, intron 4 of 8) 19401 ENSMUSG00000027460.7 ENSMUSG00000027460 ENSMUST00000028955 Angpt4 protein_coding Interval_157395 chr8 70104371 70105103 + 0 NA intron (ENSMUSG00000002341.8, intron 8 of 14) protein_coding-intron (ENSMUSG00000002341.8, intron 8 of 14) -2151 ENSMUSG00000099042.1 ENSMUSG00000099042 ENSMUST00000184696 Mir7066 miRNA Interval_3443 chr1 58382025 58383109 + 0 NA TTS (ENSMUSG00000103839.1) TEC-TTS (ENSMUSG00000103839.1) 3567 ENSMUSG00000103839.1 ENSMUSG00000103839 ENSMUST00000194925 Gm37607 TEC Interval_134226 chr6 23244043 23244315 + 0 NA TTS (ENSMUSG00000029697.6) protein_coding-TTS (ENSMUSG00000029697.6) 4183 ENSMUSG00000029697.6 ENSMUSG00000029697 ENSMUST00000031709 Fezf1 protein_coding Interval_28831 chr11 78599565 78599872 + 0 NA intron (ENSMUSG00000017376.15, intron 3 of 10) protein_coding-intron (ENSMUSG00000017376.15, intron 3 of 10) -14163 ENSMUSG00000082110.1 ENSMUSG00000082110 ENSMUST00000119052 Gm11196 processed_pseudogene Interval_19341 chr10 97215130 97215509 + 0 NA Intergenic Intergenic -14949 ENSMUSG00000112892.1 ENSMUSG00000112892 ENSMUST00000220383 Gm8613 processed_pseudogene Interval_13807 chr10 22730569 22732153 + 0 NA promoter-TSS (ENSMUSG00000071359.13) protein_coding-promoter-TSS (ENSMUSG00000071359.13) -124 ENSMUSG00000118528.1 ENSMUSG00000118528 ENSMUST00000238910 AC166256.1 protein_coding Interval_121867 chr5 8996673 8997758 + 0 NA promoter-TSS (ENSMUSG00000003623.4) protein_coding-promoter-TSS (ENSMUSG00000003623.4) 56 ENSMUSG00000102921.1 ENSMUSG00000102921 ENSMUST00000193637 Gm37153 TEC Interval_46307 chr13 63579712 63580365 + 0 NA TTS (ENSMUSG00000113459.1) lincRNA-TTS (ENSMUSG00000113459.1) 2228 ENSMUSG00000113459.1 ENSMUSG00000113459 ENSMUST00000222732 Gm30655 lincRNA Interval_44622 chr13 46772568 46773139 + 0 NA exon (ENSMUSG00000021375.11, exon 30 of 38) protein_coding-exon (ENSMUSG00000021375.11, exon 30 of 38) -5204 ENSMUSG00000064558.1 ENSMUSG00000064558 ENSMUST00000082624 Gm24620 snoRNA Interval_125368 chr5 66494777 66496498 + 0 NA intron (ENSMUSG00000029207.16, intron 1 of 3) protein_coding-intron (ENSMUSG00000029207.16, intron 2 of 17) -3465 ENSMUSG00000029207.16 ENSMUSG00000029207 ENSMUST00000159847 Apbb2 protein_coding Interval_90611 chr2 31459159 31460814 + 0 NA intron (ENSMUSG00000055632.18, intron 97 of 97) protein_coding-intron (ENSMUSG00000055632.18, intron 97 of 97) -40740 ENSMUSG00000076441.9 ENSMUSG00000076441 ENSMUST00000130195 Ass1 protein_coding Interval_160584 chr8 110856650 110857103 + 0 NA intron (ENSMUSG00000031753.16, intron 5 of 17) protein_coding-intron (ENSMUSG00000031753.16, intron 5 of 18) 9825 ENSMUSG00000031753.16 ENSMUSG00000031753 ENSMUST00000172497 Cog4 protein_coding Interval_163366 chr9 21099920 21100116 + 0 NA intron (ENSMUSG00000086016.1, intron 1 of 1) antisense-intron (ENSMUSG00000086016.1, intron 1 of 1) -8010 ENSMUSG00000010205.11 ENSMUSG00000010205 ENSMUST00000115487 Raver1 protein_coding Interval_144386 chr7 24845324 24846176 + 0 NA Intergenic Intergenic -15196 ENSMUSG00000108302.1 ENSMUSG00000108302 ENSMUST00000205486 Gm18207 processed_pseudogene Interval_127826 chr5 108053779 108054066 + 0 NA Intergenic Intergenic 1994 ENSMUSG00000096920.1 ENSMUSG00000096920 ENSMUST00000180714 Rps19-ps8 processed_pseudogene Interval_58748 chr15 37753887 37756462 + 0 NA intron (ENSMUSG00000051359.15, intron 1 of 2) protein_coding-intron (ENSMUSG00000051359.15, intron 1 of 6) 10227 ENSMUSG00000086313.1 ENSMUSG00000086313 ENSMUST00000156011 Gm15940 sense_intronic Interval_154070 chr8 12457133 12457803 + 0 NA Intergenic Intergenic 9496 ENSMUSG00000109921.1 ENSMUSG00000109921 ENSMUST00000209741 Gm33326 lincRNA Interval_9501 chr1 158082311 158083039 + 0 NA intron (ENSMUSG00000102789.1, intron 3 of 3) TEC-intron (ENSMUSG00000102789.1, intron 3 of 3) 142290 ENSMUSG00000102789.1 ENSMUSG00000102789 ENSMUST00000192097 Gm38256 TEC Interval_118958 chr4 134713733 134714557 + 0 NA Intergenic Intergenic -10378 ENSMUSG00000037306.13 ENSMUSG00000037306 ENSMUST00000176606 Man1c1 protein_coding Interval_998 chr1 13771333 13772160 + 0 NA Intergenic Intergenic 2718 ENSMUSG00000077368.1 ENSMUSG00000077368 ENSMUST00000104180 Gm26273 snoRNA Interval_40975 chr12 110379943 110380412 + 0 NA Intergenic Intergenic 54792 ENSMUSG00000114183.1 ENSMUSG00000114183 ENSMUST00000222991 Gm47195 processed_pseudogene Interval_86108 chr19 36782601 36783795 + 0 NA Intergenic Intergenic -35450 ENSMUSG00000117938.1 ENSMUSG00000117938 ENSMUST00000236351 Gm50112 processed_pseudogene Interval_15131 chr10 42761237 42762468 + 0 NA promoter-TSS (ENSMUSG00000019802.13) protein_coding-promoter-TSS (ENSMUSG00000019802.13) 237 ENSMUSG00000019802.13 ENSMUSG00000019802 ENSMUST00000105496 Sec63 protein_coding Interval_17106 chr10 71371372 71371638 + 0 NA intron (ENSMUSG00000060733.13, intron 3 of 5) protein_coding-intron (ENSMUSG00000060733.13, intron 3 of 5) 23669 ENSMUSG00000060733.13 ENSMUSG00000060733 ENSMUST00000145521 Ipmk protein_coding Interval_128352 chr5 112686307 112688130 + 0 NA Intergenic Intergenic 11843 ENSMUSG00000104807.1 ENSMUSG00000104807 ENSMUST00000197981 Gm42865 lincRNA Interval_49468 chr13 112264670 112265410 + 0 NA Intergenic Intergenic -23411 ENSMUSG00000049985.15 ENSMUSG00000049985 ENSMUST00000223871 Ankrd55 protein_coding Interval_72954 chr17 33795031 33795354 + 0 NA Intergenic Intergenic -9468 ENSMUSG00000092602.1 ENSMUSG00000092602 ENSMUST00000173637 4931413I07Rik lincRNA Interval_36093 chr12 35546837 35547208 + 0 NA exon (ENSMUSG00000113580.1, exon 1 of 1) lincRNA-exon (ENSMUSG00000113580.1, exon 1 of 1) 991 ENSMUSG00000113580.1 ENSMUSG00000113580 ENSMUST00000220905 Gm48237 lincRNA Interval_1788 chr1 33789998 33790267 + 0 NA intron (ENSMUSG00000042197.13, intron 3 of 6) protein_coding-intron (ENSMUSG00000042197.13, intron 3 of 14) 24294 ENSMUSG00000042197.13 ENSMUSG00000042197 ENSMUST00000125723 Zfp451 protein_coding Interval_15579 chr10 51779383 51779924 + 0 NA Intergenic Intergenic 7288 ENSMUSG00000112337.1 ENSMUSG00000112337 ENSMUST00000217696 Gm47614 lincRNA Interval_73156 chr17 35146561 35148587 + 0 NA TTS (ENSMUSG00000024392.17) protein_coding-TTS (ENSMUSG00000024392.17) 6415 ENSMUSG00000024392.17 ENSMUSG00000024392 ENSMUST00000172882 Bag6 protein_coding Interval_127760 chr5 107490978 107491641 + 0 NA intron (ENSMUSG00000111375.4, intron 8 of 8) protein_coding-intron (ENSMUSG00000111375.4, intron 8 of 8) -12229 ENSMUSG00000089628.1 ENSMUSG00000089628 ENSMUST00000161387 Gm9727 processed_pseudogene Interval_79563 chr18 33794313 33795439 + 0 NA promoter-TSS (ENSMUSG00000087590.2) lincRNA-promoter-TSS (ENSMUSG00000087590.2) -63 ENSMUSG00000087590.2 ENSMUSG00000087590 ENSMUST00000179138 Epb41l4aos lincRNA Interval_15741 chr10 55537038 55538115 + 0 NA Intergenic Intergenic 413214 ENSMUSG00000112755.1 ENSMUSG00000112755 ENSMUST00000219650 Gm46190 processed_pseudogene Interval_1584 chr1 28180401 28180911 + 0 NA Intergenic Intergenic 190746 ENSMUSG00000101372.1 ENSMUSG00000101372 ENSMUST00000189614 Gm19028 processed_pseudogene Interval_127609 chr5 105757513 105758327 + 0 NA intron (ENSMUSG00000046079.16, intron 1 of 2) protein_coding-intron (ENSMUSG00000046079.16, intron 2 of 2) 26531 ENSMUSG00000046079.16 ENSMUSG00000046079 ENSMUST00000134605 Lrrc8d protein_coding Interval_107996 chr3 119220972 119221291 + 0 NA intron (ENSMUSG00000033308.16, intron 18 of 22) protein_coding-intron (ENSMUSG00000033308.16, intron 18 of 22) 352887 ENSMUSG00000106542.1 ENSMUSG00000106542 ENSMUST00000197510 Gm43410 TEC Interval_112625 chr4 43672224 43672481 + 0 NA intron (ENSMUSG00000078716.10, intron 1 of 4) protein_coding-intron (ENSMUSG00000078716.10, intron 2 of 13) -3207 ENSMUSG00000043633.6 ENSMUSG00000043633 ENSMUST00000134487 Fam221b protein_coding Interval_156901 chr8 61559671 61560576 + 0 NA intron (ENSMUSG00000058056.16, intron 10 of 21) protein_coding-intron (ENSMUSG00000058056.16, intron 10 of 19) -44223 ENSMUSG00000058056.16 ENSMUSG00000058056 ENSMUST00000123523 Palld protein_coding Interval_38425 chr12 78971547 78972977 + 0 NA TTS (ENSMUSG00000046157.13) protein_coding-TTS (ENSMUSG00000046157.13) 35078 ENSMUSG00000046157.13 ENSMUSG00000046157 ENSMUST00000173095 Tmem229b protein_coding Interval_174308 chrX 144308158 144308651 + 0 NA Intergenic Intergenic -9400 ENSMUSG00000041718.16 ENSMUSG00000041718 ENSMUST00000149811 Alg13 protein_coding Interval_34208 chr11 121307764 121308038 + 0 NA exon (ENSMUSG00000039275.9, exon 9 of 9) protein_coding-exon (ENSMUSG00000039275.9, exon 9 of 9) 17157 ENSMUSG00000039275.9 ENSMUSG00000039275 ENSMUST00000151492 Foxk2 protein_coding Interval_137755 chr6 82100398 82100822 + 0 NA Intergenic Intergenic -48029 ENSMUSG00000087136.1 ENSMUSG00000087136 ENSMUST00000145950 Gm15864 antisense Interval_39719 chr12 95325774 95325955 + 0 NA TTS (ENSMUSG00000112262.1) unprocessed_pseudogene-TTS (ENSMUSG00000112262.1) 957 ENSMUSG00000112262.1 ENSMUSG00000112262 ENSMUST00000218579 Gm48013 unprocessed_pseudogene Interval_103587 chr3 50595645 50596098 + 0 NA intron (ENSMUSG00000102715.1, intron 1 of 4) processed_transcript-intron (ENSMUSG00000102715.1, intron 1 of 4) 2573 ENSMUSG00000103745.1 ENSMUSG00000103745 ENSMUST00000193366 Gm38237 processed_pseudogene Interval_47097 chr13 75706967 75708579 + 0 NA promoter-TSS (ENSMUSG00000001542.7) protein_coding-promoter-TSS (ENSMUSG00000001542.7) 62 ENSMUSG00000001542.7 ENSMUSG00000001542 ENSMUST00000221979 Ell2 protein_coding Interval_8966 chr1 152795948 152796861 + 0 NA Intergenic Intergenic -11433 ENSMUSG00000026480.12 ENSMUSG00000026480 ENSMUST00000187235 Ncf2 protein_coding Interval_3550 chr1 59515767 59516803 + 0 NA promoter-TSS (ENSMUSG00000047361.16) protein_coding-promoter-TSS (ENSMUSG00000047361.16) 20944 ENSMUSG00000101409.1 ENSMUSG00000101409 ENSMUST00000186973 1700122D07Rik antisense Interval_41690 chr12 117772599 117773091 + 0 NA Intergenic Intergenic 48873 ENSMUSG00000113840.1 ENSMUSG00000113840 ENSMUST00000223173 Gm18955 processed_pseudogene Interval_9304 chr1 156053832 156054420 + 0 NA TTS (ENSMUSG00000050565.16) protein_coding-TTS (ENSMUSG00000050565.16) 18354 ENSMUSG00000050565.16 ENSMUSG00000050565 ENSMUST00000125371 Tor1aip2 protein_coding Interval_167363 chr9 67813253 67814655 + 0 NA Intergenic Intergenic 18376 ENSMUSG00000047990.6 ENSMUSG00000047990 ENSMUST00000054500 C2cd4a protein_coding Interval_20596 chr10 119270257 119271032 + 0 NA Intergenic Intergenic -49590 ENSMUSG00000112155.1 ENSMUSG00000112155 ENSMUST00000218762 4930477N07Rik lincRNA Interval_158089 chr8 78655199 78656079 + 0 NA intron (ENSMUSG00000031684.11, intron 1 of 2) protein_coding-intron (ENSMUSG00000031684.11, intron 5 of 11) 51345 ENSMUSG00000110244.1 ENSMUSG00000110244 ENSMUST00000211775 Gm2253 processed_pseudogene Interval_15509 chr10 50049052 50049487 + 0 NA Intergenic Intergenic -67388 ENSMUSG00000111142.1 ENSMUSG00000111142 ENSMUST00000214421 Gm48131 TEC Interval_68675 chr16 84546187 84546641 + 0 NA Intergenic Intergenic 31045 ENSMUSG00000110358.1 ENSMUSG00000110358 ENSMUST00000210306 A730009L09Rik protein_coding Interval_106613 chr3 97756777 97758091 + 0 NA intron (ENSMUSG00000038170.15, intron 3 of 16) protein_coding-intron (ENSMUSG00000038170.15, intron 3 of 16) 26905 ENSMUSG00000105245.1 ENSMUSG00000105245 ENSMUST00000200435 Gm31305 antisense Interval_47685 chr13 91223265 91224355 + 0 NA intron (ENSMUSG00000021619.6, intron 1 of 6) protein_coding-intron (ENSMUSG00000021619.6, intron 1 of 7) 149 ENSMUSG00000021619.6 ENSMUSG00000021619 ENSMUST00000223729 Atg10 protein_coding Interval_54755 chr14 74756784 74757197 + 0 NA exon (ENSMUSG00000068015.8, exon 20 of 20) protein_coding-exon (ENSMUSG00000068015.8, exon 20 of 20) 24671 ENSMUSG00000021996.16 ENSMUSG00000021996 ENSMUST00000176726 Esd protein_coding Interval_153045 chr7 141040868 141041242 + 0 NA Intergenic Intergenic -10534 ENSMUSG00000109703.1 ENSMUSG00000109703 ENSMUST00000210199 Gm45299 transcribed_processed_pseudogene Interval_158095 chr8 78692661 78692912 + 0 NA intron (ENSMUSG00000031684.11, intron 7 of 10) protein_coding-intron (ENSMUSG00000031684.11, intron 7 of 11) 81759 ENSMUSG00000112190.1 ENSMUSG00000112190 ENSMUST00000218647 Gm47209 unitary_pseudogene Interval_156511 chr8 48842643 48845237 + 0 NA promoter-TSS (ENSMUSG00000100706.6) processed_transcript-promoter-TSS (ENSMUSG00000100706.6) 218 ENSMUSG00000100706.6 ENSMUSG00000100706 ENSMUST00000188936 Gm19744 processed_transcript Interval_138154 chr6 85525610 85525831 + 0 NA Intergenic Intergenic -3732 ENSMUSG00000107410.1 ENSMUSG00000107410 ENSMUST00000203710 Gm44023 processed_pseudogene Interval_25817 chr11 51898949 51900157 + 0 NA intron (ENSMUSG00000110618.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000110618.1, intron 1 of 2) 587 ENSMUSG00000110618.1 ENSMUSG00000110618 ENSMUST00000212253 Gm39822 lincRNA Interval_12023 chr1 188919165 188919775 + 0 NA intron (ENSMUSG00000026609.15, intron 63 of 70) protein_coding-intron (ENSMUSG00000026609.15, intron 63 of 70) 88371 ENSMUSG00000026608.13 ENSMUSG00000026608 ENSMUST00000193273 Kctd3 protein_coding Interval_100691 chr2 171637968 171639643 + 0 NA Intergenic Intergenic 323326 ENSMUSG00000086823.7 ENSMUSG00000086823 ENSMUST00000125465 1700028P15Rik processed_transcript Interval_165909 chr9 54578527 54579103 + 0 NA Intergenic Intergenic -7519 ENSMUSG00000032279.11 ENSMUSG00000032279 ENSMUST00000214136 Idh3a protein_coding Interval_142535 chr6 143134871 143135655 + 0 NA TTS (ENSMUSG00000107398.1) processed_pseudogene-TTS (ENSMUSG00000107398.1) 176 ENSMUSG00000107398.1 ENSMUSG00000107398 ENSMUST00000203058 Gm44306 processed_pseudogene Interval_1473 chr1 23910174 23910633 + 0 NA promoter-TSS (ENSMUSG00000026155.13) protein_coding-promoter-TSS (ENSMUSG00000026155.13) -667 ENSMUSG00000026155.13 ENSMUSG00000026155 ENSMUST00000133398 Smap1 protein_coding Interval_139816 chr6 109066795 109067874 + 0 NA Intergenic Intergenic -58351 ENSMUSG00000107501.1 ENSMUSG00000107501 ENSMUST00000203862 Gm29781 processed_pseudogene Interval_171686 chr9 120151592 120152748 + 0 NA promoter-TSS (ENSMUSG00000032517.16) protein_coding-promoter-TSS (ENSMUSG00000032517.16) 2453 ENSMUSG00000032517.16 ENSMUSG00000032517 ENSMUST00000214008 Mobp protein_coding Interval_90130 chr2 28430011 28431163 + 0 NA Intergenic Intergenic -17354 ENSMUSG00000035829.13 ENSMUSG00000035829 ENSMUST00000040324 Ppp1r26 protein_coding Interval_16942 chr10 70040005 70040340 + 0 NA Intergenic Intergenic -134839 ENSMUSG00000048701.13 ENSMUSG00000048701 ENSMUST00000135607 Ccdc6 protein_coding Interval_118589 chr4 132647510 132647853 + 0 NA intron (ENSMUSG00000028886.15, intron 1 of 15) protein_coding-intron (ENSMUSG00000028886.15, intron 1 of 14) 8635 ENSMUSG00000028886.15 ENSMUSG00000028886 ENSMUST00000130833 Eya3 protein_coding Interval_125387 chr5 66604202 66604603 + 0 NA intron (ENSMUSG00000029207.16, intron 1 of 5) protein_coding-intron (ENSMUSG00000029207.16, intron 1 of 17) -8832 ENSMUSG00000106706.1 ENSMUSG00000106706 ENSMUST00000201865 C530043K16Rik TEC Interval_140479 chr6 118626400 118626632 + 0 NA intron (ENSMUSG00000051331.16, intron 30 of 44) protein_coding-intron (ENSMUSG00000051331.16, intron 32 of 46) -7292 ENSMUSG00000100867.1 ENSMUSG00000100867 ENSMUST00000185373 Gm18981 processed_pseudogene Interval_122419 chr5 22472637 22473577 + 0 NA promoter-TSS (ENSMUSG00000105081.1) processed_pseudogene-promoter-TSS (ENSMUSG00000105081.1) -115 ENSMUSG00000105081.1 ENSMUSG00000105081 ENSMUST00000198877 Gm43110 processed_pseudogene Interval_129563 chr5 120953923 120954797 + 0 NA intron (ENSMUSG00000029608.10, intron 13 of 21) protein_coding-intron (ENSMUSG00000029608.10, intron 13 of 21) 17987 ENSMUSG00000106841.1 ENSMUSG00000106841 ENSMUST00000201506 Gm42656 TEC Interval_49019 chr13 106955517 106956099 + 0 NA intron (ENSMUSG00000021692.9, intron 8 of 9) protein_coding-intron (ENSMUSG00000021692.9, intron 10 of 11) 8653 ENSMUSG00000021692.9 ENSMUSG00000021692 ENSMUST00000223870 Dimt1 protein_coding Interval_118286 chr4 130045622 130046298 + 0 NA intron (ENSMUSG00000085517.7, intron 1 of 3) antisense-intron (ENSMUSG00000085517.7, intron 1 of 6) -9095 ENSMUSG00000040690.15 ENSMUSG00000040690 ENSMUST00000135675 Col16a1 protein_coding Interval_98443 chr2 152390789 152391476 + 0 NA Intergenic Intergenic 6931 ENSMUSG00000051817.8 ENSMUSG00000051817 ENSMUST00000063332 Sox12 protein_coding Interval_134903 chr6 33380702 33380925 + 0 NA intron (ENSMUSG00000029763.17, intron 2 of 4) protein_coding-intron (ENSMUSG00000029763.17, intron 7 of 17) -3367 ENSMUSG00000083728.1 ENSMUSG00000083728 ENSMUST00000121183 Gm13854 processed_pseudogene Interval_154208 chr8 13448205 13448939 + 0 NA intron (ENSMUSG00000038457.17, intron 3 of 8) protein_coding-intron (ENSMUSG00000038457.17, intron 2 of 7) 13383 ENSMUSG00000038457.17 ENSMUSG00000038457 ENSMUST00000209950 Tmem255b protein_coding Interval_153121 chr7 141467028 141469174 + 0 NA promoter-TSS (ENSMUSG00000025510.14) protein_coding-promoter-TSS (ENSMUSG00000025510.14) 709 ENSMUSG00000025510.14 ENSMUSG00000025510 ENSMUST00000210308 Cd151 protein_coding Interval_136673 chr6 57489601 57489869 + 0 NA intron (ENSMUSG00000108112.1, intron 2 of 13) antisense-intron (ENSMUSG00000093535.1, intron 6 of 6) 4614 ENSMUSG00000108112.1 ENSMUSG00000108112 ENSMUST00000204686 Gm45193 processed_transcript Interval_125628 chr5 72881302 72881645 + 0 NA Intergenic Intergenic -33195 ENSMUSG00000036087.18 ENSMUSG00000036087 ENSMUST00000145939 Slain2 protein_coding Interval_103795 chr3 53023632 53024010 + 0 NA Intergenic Intergenic -6603 ENSMUSG00000027742.13 ENSMUSG00000027742 ENSMUST00000193043 Cog6 protein_coding Interval_10833 chr1 175816542 175817184 + 0 NA Intergenic Intergenic 16349 ENSMUSG00000077794.1 ENSMUSG00000077794 ENSMUST00000104606 Gm25560 snRNA Interval_47986 chr13 94873313 94874006 + 0 NA Intergenic Intergenic -8941 ENSMUSG00000021685.11 ENSMUSG00000021685 ENSMUST00000184985 Otp protein_coding Interval_80693 chr18 46355127 46357081 + 0 NA exon (ENSMUSG00000118282.1, exon 1 of 1) processed_pseudogene-exon (ENSMUSG00000118282.1, exon 1 of 1) 863 ENSMUSG00000118282.1 ENSMUSG00000118282 ENSMUST00000237083 Gm4840 processed_pseudogene Interval_96468 chr2 124145165 124146367 + 0 NA intron (ENSMUSG00000027200.17, intron 1 of 4) protein_coding-intron (ENSMUSG00000027200.17, intron 2 of 20) 2761 ENSMUSG00000027200.17 ENSMUSG00000027200 ENSMUST00000103238 Sema6d protein_coding Interval_123996 chr5 37076654 37076851 + 0 NA intron (ENSMUSG00000063646.18, intron 1 of 1) protein_coding-intron (ENSMUSG00000063646.18, intron 1 of 12) -8618 ENSMUSG00000117286.1 ENSMUSG00000117286 ENSMUST00000094840 Gm1043 protein_coding Interval_51088 chr14 22347393 22347759 + 0 NA intron (ENSMUSG00000063458.13, intron 1 of 3) protein_coding-intron (ENSMUSG00000063458.13, intron 2 of 6) 195247 ENSMUSG00000114412.1 ENSMUSG00000114412 ENSMUST00000225587 4930405A10Rik antisense Interval_6763 chr1 119328978 119330647 + 0 NA intron (ENSMUSG00000101179.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000101179.1, intron 1 of 2) 612 ENSMUSG00000101179.1 ENSMUSG00000101179 ENSMUST00000186504 Gm29455 lincRNA Interval_171723 chr9 120516479 120516954 + 0 NA Intergenic Intergenic -5097 ENSMUSG00000111816.1 ENSMUSG00000111816 ENSMUST00000214719 Gm7229 unprocessed_pseudogene Interval_114852 chr4 86335793 86336242 + 0 NA intron (ENSMUSG00000066113.16, intron 16 of 28) protein_coding-intron (ENSMUSG00000066113.16, intron 3 of 15) 106324 ENSMUSG00000083272.1 ENSMUSG00000083272 ENSMUST00000118478 Gm12550 processed_pseudogene Interval_43999 chr13 38935000 38936292 + 0 NA intron (ENSMUSG00000021432.15, intron 7 of 8) protein_coding-intron (ENSMUSG00000021432.15, intron 8 of 9) -16427 ENSMUSG00000114949.1 ENSMUSG00000114949 ENSMUST00000223588 Gm47530 TEC Interval_82826 chr18 77243668 77244048 + 0 NA intron (ENSMUSG00000025425.18, intron 3 of 6) protein_coding-intron (ENSMUSG00000025425.18, intron 4 of 7) -12056 ENSMUSG00000025425.18 ENSMUSG00000025425 ENSMUST00000236592 St8sia5 protein_coding Interval_85073 chr19 22234081 22235310 + 0 NA TTS (ENSMUSG00000088558.1) snoRNA-TTS (ENSMUSG00000088558.1) 923 ENSMUSG00000088558.1 ENSMUSG00000088558 ENSMUST00000157933 Gm22506 snoRNA Interval_1710 chr1 31931571 31932531 + 0 NA Intergenic Intergenic 195994 ENSMUSG00000082159.2 ENSMUSG00000082159 ENSMUST00000117896 Gm7910 processed_pseudogene Interval_172111 chrX 7670086 7671468 + 0 NA intron (ENSMUSG00000031146.6, intron 1 of 1) protein_coding-intron (ENSMUSG00000031146.6, intron 1 of 4) 536 ENSMUSG00000031146.6 ENSMUSG00000031146 ENSMUST00000143854 Plp2 protein_coding Interval_99689 chr2 164265195 164265446 + 0 NA Intergenic Intergenic -8680 ENSMUSG00000050383.5 ENSMUSG00000050383 ENSMUST00000063132 Svs3b protein_coding Interval_114626 chr4 83284185 83285212 + 0 NA intron (ENSMUSG00000038172.14, intron 2 of 19) protein_coding-intron (ENSMUSG00000038172.14, intron 2 of 6) 471 ENSMUSG00000038172.14 ENSMUSG00000038172 ENSMUST00000148811 Ttc39b protein_coding Interval_153738 chr8 5859002 5859895 + 0 NA Intergenic Intergenic 135275 ENSMUSG00000109069.1 ENSMUSG00000109069 ENSMUST00000208561 Gm2734 processed_pseudogene Interval_44113 chr13 40957767 40958127 + 0 NA intron (ENSMUSG00000086693.1, intron 4 of 4) protein_coding-intron (ENSMUSG00000021360.16, intron 2 of 2) 4532 ENSMUSG00000021360.16 ENSMUSG00000021360 ENSMUST00000225996 Gcnt2 protein_coding Interval_103623 chr3 51256044 51256825 + 0 NA exon (ENSMUSG00000037174.18, exon 10 of 10) protein_coding-exon (ENSMUSG00000037174.18, exon 10 of 10) 13026 ENSMUSG00000023087.15 ENSMUSG00000023087 ENSMUST00000193018 Noct protein_coding Interval_15436 chr10 46605744 46606585 + 0 NA Intergenic Intergenic 52474 ENSMUSG00000077361.1 ENSMUSG00000077361 ENSMUST00000104173 Gm23481 snoRNA Interval_20634 chr10 119789385 119790076 + 0 NA intron (ENSMUSG00000034813.18, intron 1 of 3) protein_coding-intron (ENSMUSG00000034813.18, intron 1 of 22) -28031 ENSMUSG00000084764.1 ENSMUSG00000084764 ENSMUST00000153898 Grip1os2 antisense Interval_101802 chr3 9617205 9617982 + 0 NA Intergenic Intergenic -38927 ENSMUSG00000103876.1 ENSMUSG00000103876 ENSMUST00000195844 Gm17806 processed_pseudogene Interval_26410 chr11 57698051 57698296 + 0 NA intron (ENSMUSG00000020520.14, intron 1 of 2) protein_coding-intron (ENSMUSG00000020520.14, intron 1 of 11) -40347 ENSMUSG00000086933.1 ENSMUSG00000086933 ENSMUST00000143009 4933426K07Rik antisense Interval_84968 chr19 20601845 20602094 + 0 NA promoter-TSS (ENSMUSG00000053279.8) protein_coding-promoter-TSS (ENSMUSG00000053279.8) -15212 ENSMUSG00000047168.6 ENSMUSG00000047168 ENSMUST00000053717 Gm6684 processed_pseudogene Interval_129792 chr5 122379463 122380484 + 0 NA intron (ENSMUSG00000029464.10, intron 3 of 6) protein_coding-intron (ENSMUSG00000029464.10, intron 3 of 7) 2565 ENSMUSG00000104916.1 ENSMUSG00000104916 ENSMUST00000196642 Gm42830 TEC Interval_83136 chr18 81967589 81969149 + 0 NA intron (ENSMUSG00000117923.1, intron 5 of 5) lincRNA-intron (ENSMUSG00000117923.1, intron 5 of 5) -12700 ENSMUSG00000077599.1 ENSMUSG00000077599 ENSMUST00000104411 Gm26012 snoRNA Interval_126524 chr5 89558712 89559740 + 0 NA intron (ENSMUSG00000035528.4, intron 1 of 3) protein_coding-intron (ENSMUSG00000035528.4, intron 1 of 3) 31797 ENSMUSG00000035528.4 ENSMUSG00000035528 ENSMUST00000048557 Npffr2 protein_coding Interval_85196 chr19 23657154 23658067 + 0 NA Intergenic Intergenic -4798 ENSMUSG00000033053.4 ENSMUSG00000033053 ENSMUST00000035849 1700028P14Rik protein_coding Interval_79202 chr18 25608310 25608518 + 0 NA intron (ENSMUSG00000024268.16, intron 2 of 5) protein_coding-intron (ENSMUSG00000024268.16, intron 2 of 12) -9960 ENSMUSG00000084537.1 ENSMUSG00000084537 ENSMUST00000122588 Gm25845 misc_RNA Interval_51673 chr14 31268694 31270222 + 0 NA promoter-TSS (ENSMUSG00000019027.8) protein_coding-promoter-TSS (ENSMUSG00000019027.8) 53 ENSMUSG00000019027.8 ENSMUSG00000019027 ENSMUST00000228429 Dnah1 protein_coding Interval_44076 chr13 40736036 40736461 + 0 NA intron (ENSMUSG00000021359.16, intron 1 of 6) protein_coding-intron (ENSMUSG00000021359.16, intron 1 of 6) -1320 ENSMUSG00000114597.1 ENSMUSG00000114597 ENSMUST00000224614 Gm47067 antisense Interval_112267 chr4 39436703 39436875 + 0 NA intron (ENSMUSG00000090839.1, intron 3 of 10) antisense-intron (ENSMUSG00000090839.1, intron 3 of 10) 13460 ENSMUSG00000090839.1 ENSMUSG00000090839 ENSMUST00000169881 Gm17094 antisense Interval_107672 chr3 110011063 110011323 + 0 NA intron (ENSMUSG00000059857.15, intron 1 of 4) protein_coding-intron (ENSMUSG00000059857.15, intron 1 of 6) 103809 ENSMUSG00000082624.1 ENSMUSG00000082624 ENSMUST00000121025 Gm12535 processed_pseudogene Interval_19230 chr10 95642790 95643551 + 0 NA Intergenic Intergenic 8687 ENSMUSG00000112538.1 ENSMUSG00000112538 ENSMUST00000218479 Gm47667 lincRNA Interval_174503 chrX 153707971 153708201 + 0 NA Intergenic Intergenic -11695 ENSMUSG00000041633.14 ENSMUSG00000041633 ENSMUST00000112572 Kctd12b protein_coding Interval_85422 chr19 25665447 25666511 + 0 NA Intergenic Intergenic 6243 ENSMUSG00000101089.1 ENSMUSG00000101089 ENSMUST00000186768 2610016A17Rik antisense Interval_139527 chr6 100788885 100789106 + 0 NA intron (ENSMUSG00000030074.9, intron 5 of 6) protein_coding-intron (ENSMUSG00000030074.9, intron 5 of 6) -2834 ENSMUSG00000107989.1 ENSMUSG00000107989 ENSMUST00000203856 Gm19692 TEC Interval_124702 chr5 53441137 53441443 + 0 NA Intergenic Intergenic 22717 ENSMUSG00000088646.1 ENSMUSG00000088646 ENSMUST00000158021 Gm26486 rRNA Interval_44141 chr13 41173244 41173593 + 0 NA TTS (ENSMUSG00000038651.15) protein_coding-TTS (ENSMUSG00000038651.15) -3470 ENSMUSG00000114388.1 ENSMUSG00000114388 ENSMUST00000225455 Gm48510 lincRNA Interval_170300 chr9 106779638 106780002 + 0 NA intron (ENSMUSG00000040661.6, intron 1 of 21) protein_coding-intron (ENSMUSG00000040661.6, intron 1 of 21) 9356 ENSMUSG00000040661.6 ENSMUSG00000040661 ENSMUST00000191300 Rad54l2 protein_coding Interval_44825 chr13 48939387 48940089 + 0 NA intron (ENSMUSG00000038014.7, intron 3 of 17) protein_coding-intron (ENSMUSG00000038014.7, intron 3 of 17) 28279 ENSMUSG00000038014.7 ENSMUSG00000038014 ENSMUST00000060805 Fam120a protein_coding Interval_29749 chr11 86561089 86561808 + 0 NA intron (ENSMUSG00000020513.15, intron 7 of 8) protein_coding-intron (ENSMUSG00000020513.15, intron 8 of 9) 16457 ENSMUSG00000020513.15 ENSMUSG00000020513 ENSMUST00000164931 Tubd1 protein_coding Interval_73972 chr17 45766786 45767801 + 0 NA promoter-TSS (ENSMUSG00000097727.8) lincRNA-promoter-TSS (ENSMUSG00000097727.8) 98 ENSMUSG00000097727.8 ENSMUSG00000097727 ENSMUST00000233473 F630040K05Rik lincRNA Interval_92301 chr2 58542457 58542666 + 0 NA intron (ENSMUSG00000026836.15, intron 1 of 11) protein_coding-intron (ENSMUSG00000026836.15, intron 1 of 10) -26289 ENSMUSG00000026836.15 ENSMUSG00000026836 ENSMUST00000126407 Acvr1 protein_coding Interval_118439 chr4 131600965 131601191 + 0 NA Intergenic Intergenic 71063 ENSMUSG00000087171.1 ENSMUSG00000087171 ENSMUST00000138697 Gm12962 lincRNA Interval_2318 chr1 38015075 38015299 + 0 NA intron (ENSMUSG00000026083.12, intron 1 of 21) protein_coding-intron (ENSMUSG00000026083.12, intron 1 of 23) -17294 ENSMUSG00000058407.12 ENSMUSG00000058407 ENSMUST00000194692 Txndc9 protein_coding Interval_2304 chr1 37928384 37928680 + 0 NA Intergenic Intergenic -5064 ENSMUSG00000087374.1 ENSMUSG00000087374 ENSMUST00000129513 Gm15457 antisense Interval_143409 chr7 6468486 6468754 + 0 NA intron (ENSMUSG00000054938.7, intron 2 of 2) protein_coding-intron (ENSMUSG00000054938.7, intron 1 of 1) 1519 ENSMUSG00000054938.7 ENSMUSG00000054938 ENSMUST00000056144 Olfr1346 protein_coding Interval_105526 chr3 87310151 87310360 + 0 NA Intergenic Intergenic -46517 ENSMUSG00000015852.13 ENSMUSG00000015852 ENSMUST00000146512 Fcrls protein_coding Interval_95124 chr2 104069506 104071232 + 0 NA promoter-TSS (ENSMUSG00000068686.12) protein_coding-promoter-TSS (ENSMUSG00000068686.12) 478 ENSMUSG00000068686.12 ENSMUSG00000068686 ENSMUST00000111130 Cd59b protein_coding Interval_139529 chr6 100802558 100803659 + 0 NA intron (ENSMUSG00000030074.9, intron 6 of 6) protein_coding-intron (ENSMUSG00000030074.9, intron 6 of 6) 11279 ENSMUSG00000107989.1 ENSMUSG00000107989 ENSMUST00000203856 Gm19692 TEC Interval_12603 chr10 3850113 3850957 + 0 NA intron (ENSMUSG00000040624.18, intron 1 of 15) protein_coding-intron (ENSMUSG00000040624.18, intron 2 of 16) 15656 ENSMUSG00000040624.18 ENSMUSG00000040624 ENSMUST00000141367 Plekhg1 protein_coding Interval_59292 chr15 50840461 50840728 + 0 NA intron (ENSMUSG00000038679.16, intron 1 of 4) protein_coding-intron (ENSMUSG00000038679.16, intron 3 of 6) 48520 ENSMUSG00000084458.1 ENSMUSG00000084458 ENSMUST00000122509 Mir1907 miRNA Interval_146317 chr7 45311981 45312307 + 0 NA promoter-TSS (ENSMUSG00000038260.10) protein_coding-promoter-TSS (ENSMUSG00000038260.10) -12821 ENSMUSG00000046721.11 ENSMUSG00000046721 ENSMUST00000026901 Rpl14-ps1 processed_pseudogene Interval_73332 chr17 36252193 36253648 + 0 NA promoter-TSS (ENSMUSG00000092317.1) processed_pseudogene-promoter-TSS (ENSMUSG00000092317.1) -534 ENSMUSG00000092317.1 ENSMUSG00000092317 ENSMUST00000173851 Gm6633 processed_pseudogene Interval_151086 chr7 118446979 118449012 + 0 NA promoter-TSS (ENSMUSG00000058420.8) protein_coding-promoter-TSS (ENSMUSG00000058420.8) 61 ENSMUSG00000058420.8 ENSMUSG00000058420 ENSMUST00000207650 Syt17 protein_coding Interval_144005 chr7 18915866 18916564 + 0 NA Intergenic Intergenic -9673 ENSMUSG00000030411.16 ENSMUSG00000030411 ENSMUST00000220302 Nova2 protein_coding Interval_53171 chr14 54899431 54900847 + 0 NA Intergenic Intergenic 5983 ENSMUSG00000022194.15 ENSMUSG00000022194 ENSMUST00000146271 Pabpn1 protein_coding Interval_159916 chr8 105164398 105165294 + 0 NA intron (ENSMUSG00000099465.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000099465.1, intron 1 of 1) 259 ENSMUSG00000099465.1 ENSMUSG00000099465 ENSMUST00000185540 Gm3830 lincRNA Interval_59467 chr15 53343316 53344301 + 0 NA intron (ENSMUSG00000061731.9, intron 1 of 10) protein_coding-intron (ENSMUSG00000061731.9, intron 1 of 10) -40111 ENSMUSG00000087805.2 ENSMUSG00000087805 ENSMUST00000157180 Gm27926 snRNA Interval_41367 chr12 113108741 113109582 + 0 NA intron (ENSMUSG00000021144.14, intron 1 of 20) protein_coding-intron (ENSMUSG00000021144.14, intron 1 of 20) -22387 ENSMUSG00000021144.14 ENSMUSG00000021144 ENSMUST00000156030 Mta1 protein_coding Interval_115567 chr4 100850870 100852200 + 0 NA intron (ENSMUSG00000028532.14, intron 1 of 26) protein_coding-intron (ENSMUSG00000028532.14, intron 1 of 26) -143175 ENSMUSG00000028532.14 ENSMUSG00000028532 ENSMUST00000136430 Cachd1 protein_coding Interval_66581 chr16 35319338 35319807 + 0 NA intron (ENSMUSG00000034473.14, intron 3 of 4) protein_coding-intron (ENSMUSG00000034473.14, intron 5 of 6) 3494 ENSMUSG00000116624.1 ENSMUSG00000116624 ENSMUST00000232375 Gm49706 TEC Interval_95289 chr2 105691264 105691740 + 0 NA promoter-TSS (ENSMUSG00000027168.21) protein_coding-promoter-TSS (ENSMUSG00000027168.21) 16393 ENSMUSG00000027168.21 ENSMUSG00000027168 ENSMUST00000147946 Pax6 protein_coding Interval_43124 chr13 24472251 24472454 + 0 NA exon (ENSMUSG00000016756.17, exon 17 of 17) protein_coding-exon (ENSMUSG00000016756.17, exon 17 of 17) 14412 ENSMUSG00000089413.1 ENSMUSG00000089413 ENSMUST00000158788 Gm22013 snRNA Interval_98415 chr2 152189293 152190457 + 0 NA Intergenic Intergenic -4193 ENSMUSG00000081087.1 ENSMUSG00000081087 ENSMUST00000117430 Rps15a-ps7 processed_pseudogene Interval_41390 chr12 113234008 113234249 + 0 NA Intergenic Intergenic 19979 ENSMUSG00000087842.1 ENSMUSG00000087842 ENSMUST00000157217 Gm25622 snRNA Interval_119533 chr4 138204951 138206315 + 0 NA intron (ENSMUSG00000028760.16, intron 33 of 33) protein_coding-intron (ENSMUSG00000028760.16, intron 34 of 34) -10081 ENSMUSG00000078519.3 ENSMUSG00000078519 ENSMUST00000146658 2310026L22Rik lincRNA Interval_105411 chr3 86078621 86079634 + 0 NA intron (ENSMUSG00000028082.14, intron 3 of 20) protein_coding-intron (ENSMUSG00000028082.14, intron 2 of 19) -5363 ENSMUSG00000028082.14 ENSMUSG00000028082 ENSMUST00000183202 Sh3d19 protein_coding Interval_48907 chr13 104630744 104631012 + 0 NA TTS (ENSMUSG00000021715.12) protein_coding-TTS (ENSMUSG00000021715.12) -54053 ENSMUSG00000084860.1 ENSMUSG00000084860 ENSMUST00000131215 2610204G07Rik antisense Interval_127365 chr5 103439146 103439922 + 0 NA intron (ENSMUSG00000034573.14, intron 1 of 17) protein_coding-intron (ENSMUSG00000034573.14, intron 1 of 47) -82836 ENSMUSG00000104684.1 ENSMUSG00000104684 ENSMUST00000200007 5430427N15Rik lincRNA Interval_113727 chr4 57871867 57872236 + 0 NA intron (ENSMUSG00000038729.24, intron 2 of 2) protein_coding-intron (ENSMUSG00000038729.24, intron 1 of 3) 5444 ENSMUSG00000096195.1 ENSMUSG00000096195 ENSMUST00000179236 Gm26138 snRNA Interval_11915 chr1 187091110 187091329 + 0 NA promoter-TSS (ENSMUSG00000107163.1) TEC-promoter-TSS (ENSMUSG00000107163.1) -59 ENSMUSG00000107163.1 ENSMUSG00000107163 ENSMUST00000201682 Gm43496 TEC Interval_41657 chr12 117447047 117450395 + 0 NA Intergenic Intergenic -111709 ENSMUSG00000101930.1 ENSMUSG00000101930 ENSMUST00000186454 Gm5441 antisense Interval_122905 chr5 27159911 27161659 + 0 NA intron (ENSMUSG00000061576.15, intron 1 of 25) protein_coding-intron (ENSMUSG00000061576.15, intron 1 of 25) -35170 ENSMUSG00000105946.1 ENSMUSG00000105946 ENSMUST00000199729 Gm43776 TEC Interval_10483 chr1 171256378 171257836 + 0 NA exon (ENSMUSG00000006403.13, exon 6 of 8) protein_coding-exon (ENSMUSG00000006403.13, exon 6 of 8) -5856 ENSMUSG00000013593.12 ENSMUSG00000013593 ENSMUST00000191871 Ndufs2 protein_coding Interval_23519 chr11 23083933 23084988 + 0 NA Intergenic Intergenic 16462 ENSMUSG00000085665.1 ENSMUSG00000085665 ENSMUST00000128996 Gm12059 processed_transcript Interval_75098 chr17 63350930 63351879 + 0 NA intron (ENSMUSG00000023965.13, intron 3 of 5) protein_coding-intron (ENSMUSG00000023965.13, intron 6 of 8) 3733 ENSMUSG00000093051.1 ENSMUSG00000093051 ENSMUST00000175310 Gm24813 miRNA Interval_154747 chr8 23057857 23059246 + 0 NA promoter-TSS (ENSMUSG00000031543.18) protein_coding-promoter-TSS (ENSMUSG00000031543.18) 43545 ENSMUSG00000106605.1 ENSMUSG00000106605 ENSMUST00000197671 Gm44365 miRNA Interval_61852 chr15 84671447 84671956 + 0 NA intron (ENSMUSG00000036106.15, intron 1 of 8) protein_coding-intron (ENSMUSG00000036106.15, intron 1 of 8) 2081 ENSMUSG00000036106.15 ENSMUSG00000036106 ENSMUST00000065499 Prr5 protein_coding Interval_151845 chr7 127078136 127078463 + 0 NA intron (ENSMUSG00000049350.6, intron 1 of 2) protein_coding-intron (ENSMUSG00000049350.6, intron 1 of 4) -1182 ENSMUSG00000064429.1 ENSMUSG00000064429 ENSMUST00000082495 Gm22747 snRNA Interval_41194 chr12 111722831 111723037 + 0 NA TTS (ENSMUSG00000037787.14) protein_coding-TTS (ENSMUSG00000037787.14) -3458 ENSMUSG00000090193.1 ENSMUSG00000090193 ENSMUST00000159897 Gm15995 processed_transcript Interval_156324 chr8 47388096 47388336 + 0 NA intron (ENSMUSG00000038143.16, intron 7 of 7) protein_coding-intron (ENSMUSG00000038143.16, intron 7 of 7) 25621 ENSMUSG00000038143.16 ENSMUSG00000038143 ENSMUST00000181417 Stox2 protein_coding Interval_100377 chr2 168711000 168711282 + 0 NA intron (ENSMUSG00000027546.15, intron 1 of 4) protein_coding-intron (ENSMUSG00000027546.15, intron 1 of 27) 30823 ENSMUSG00000027546.15 ENSMUSG00000027546 ENSMUST00000156555 Atp9a protein_coding Interval_6842 chr1 120032907 120034046 + 0 NA intron (ENSMUSG00000026387.15, intron 3 of 12) protein_coding-intron (ENSMUSG00000026387.15, intron 4 of 13) 26442 ENSMUSG00000026387.15 ENSMUSG00000026387 ENSMUST00000189037 Sctr protein_coding Interval_44931 chr13 50209838 50212096 + 0 NA Intergenic Intergenic -2879 ENSMUSG00000113718.1 ENSMUSG00000113718 ENSMUST00000223516 Gm2645 processed_pseudogene Interval_52674 chr14 48493795 48494870 + 0 NA intron (ENSMUSG00000036339.18, intron 4 of 4) protein_coding-intron (ENSMUSG00000036339.18, intron 10 of 15) 22010 ENSMUSG00000036339.18 ENSMUSG00000036339 ENSMUST00000226344 Tmem260 protein_coding Interval_42915 chr13 21329850 21330259 + 0 NA Intergenic Intergenic 12796 ENSMUSG00000004341.8 ENSMUSG00000004341 ENSMUST00000136668 Gpx6 protein_coding Interval_104824 chr3 75533365 75533565 + 0 NA TTS (ENSMUSG00000027835.11) protein_coding-TTS (ENSMUSG00000027835.11) 23294 ENSMUSG00000027835.11 ENSMUSG00000027835 ENSMUST00000159217 Pdcd10 protein_coding Interval_154542 chr8 19233500 19234414 + 0 NA Intergenic Intergenic -5959 ENSMUSG00000071169.1 ENSMUSG00000071169 ENSMUST00000095436 Defb46 protein_coding Interval_6170 chr1 98942461 98943090 + 0 NA Intergenic Intergenic -74589 ENSMUSG00000087804.1 ENSMUSG00000087804 ENSMUST00000157179 Gm23434 snRNA Interval_20186 chr10 115518745 115519324 + 0 NA intron (ENSMUSG00000020140.15, intron 2 of 16) protein_coding-intron (ENSMUSG00000020140.15, intron 2 of 17) -50952 ENSMUSG00000092210.1 ENSMUSG00000092210 ENSMUST00000173620 A930009A15Rik protein_coding Interval_28682 chr11 77727976 77728160 + 0 NA intron (ENSMUSG00000037857.16, intron 3 of 3) protein_coding-intron (ENSMUSG00000037857.16, intron 3 of 3) -6234 ENSMUSG00000000724.10 ENSMUSG00000000724 ENSMUST00000078623 Cryba1 protein_coding Interval_174194 chrX 139332899 139335313 + 0 NA exon (ENSMUSG00000051257.3, exon 1 of 3) protein_coding-exon (ENSMUSG00000051257.3, exon 1 of 3) 423 ENSMUSG00000051257.3 ENSMUSG00000051257 ENSMUST00000054534 Trap1a protein_coding Interval_68243 chr16 70753563 70753783 + 0 NA Intergenic Intergenic -5951 ENSMUSG00000116742.1 ENSMUSG00000116742 ENSMUST00000232475 Gm49665 processed_pseudogene Interval_56623 chr14 120910328 120911823 + 0 NA promoter-TSS (ENSMUSG00000030662.10) protein_coding-promoter-TSS (ENSMUSG00000030662.10) -4772 ENSMUSG00000030662.10 ENSMUSG00000030662 ENSMUST00000228277 Ipo5 protein_coding Interval_120744 chr4 150393569 150393779 + 0 NA intron (ENSMUSG00000039852.17, intron 1 of 22) protein_coding-intron (ENSMUSG00000039852.17, intron 1 of 22) 72481 ENSMUSG00000089292.1 ENSMUSG00000089292 ENSMUST00000158667 Gm23209 snRNA Interval_69638 chr16 94776582 94777041 + 0 NA intron (ENSMUSG00000043301.16, intron 3 of 3) protein_coding-intron (ENSMUSG00000043301.16, intron 3 of 4) 54917 ENSMUSG00000116641.1 ENSMUSG00000116641 ENSMUST00000232585 Gm41505 antisense Interval_136158 chr6 51565835 51566106 + 0 NA exon (ENSMUSG00000038301.15, exon 2 of 2) protein_coding-exon (ENSMUSG00000038301.15, exon 2 of 2) 21447 ENSMUSG00000038301.15 ENSMUSG00000038301 ENSMUST00000149024 Snx10 protein_coding Interval_162956 chr9 13710469 13711316 + 0 NA Intergenic Intergenic 16550 ENSMUSG00000111698.1 ENSMUSG00000111698 ENSMUST00000215676 Gm47105 processed_pseudogene Interval_151690 chr7 126057992 126058354 + 0 NA intron (ENSMUSG00000046182.8, intron 1 of 6) protein_coding-intron (ENSMUSG00000046182.8, intron 1 of 6) 6274 ENSMUSG00000108376.1 ENSMUSG00000108376 ENSMUST00000206586 Gm44874 TEC Interval_73274 chr17 35929792 35930438 + 0 NA exon (ENSMUSG00000039220.16, exon 17 of 19) protein_coding-exon (ENSMUSG00000039220.16, exon 17 of 19) 5835 ENSMUSG00000049832.6 ENSMUSG00000049832 ENSMUST00000173786 Rbx1-ps processed_pseudogene Interval_78336 chr18 12042364 12043101 + 0 NA intron (ENSMUSG00000049411.15, intron 14 of 15) protein_coding-intron (ENSMUSG00000049411.15, intron 11 of 12) 78748 ENSMUSG00000049411.15 ENSMUSG00000049411 ENSMUST00000234833 Tmem241 protein_coding Interval_27343 chr11 66737154 66737620 + 0 NA Intergenic Intergenic 173780 ENSMUSG00000080978.2 ENSMUSG00000080978 ENSMUST00000121380 Gm12297 processed_pseudogene Interval_147158 chr7 63919167 63919692 + 0 NA intron (ENSMUSG00000095061.1, intron 2 of 2) protein_coding-intron (ENSMUSG00000052040.10, intron 1 of 1) 2572 ENSMUSG00000095061.1 ENSMUSG00000095061 ENSMUST00000177638 E030018B13Rik protein_coding Interval_131920 chr5 140787447 140787810 + 0 NA intron (ENSMUSG00000000149.10, intron 1 of 2) protein_coding-intron (ENSMUSG00000000149.10, intron 1 of 3) 42529 ENSMUSG00000000149.10 ENSMUSG00000000149 ENSMUST00000198447 Gna12 protein_coding Interval_97125 chr2 131452593 131452913 + 0 NA Intergenic Intergenic 1887 ENSMUSG00000083671.1 ENSMUSG00000083671 ENSMUST00000117272 Gm14304 processed_pseudogene Interval_75759 chr17 71089753 71090421 + 0 NA intron (ENSMUSG00000024049.15, intron 2 of 2) protein_coding-intron (ENSMUSG00000024049.15, intron 20 of 36) -54451 ENSMUSG00000117315.1 ENSMUSG00000117315 ENSMUST00000233463 1600022D10Rik lincRNA Interval_84603 chr19 14267319 14268331 + 0 NA Intergenic Intergenic -249454 ENSMUSG00000098074.1 ENSMUSG00000098074 ENSMUST00000182766 Gm26993 processed_pseudogene Interval_94167 chr2 84806206 84806945 + 0 NA TTS (ENSMUSG00000027078.14) protein_coding-TTS (ENSMUSG00000027078.14) 346 ENSMUSG00000027078.14 ENSMUSG00000027078 ENSMUST00000159150 Ube2l6 protein_coding Interval_159689 chr8 97396848 97397446 + 0 NA Intergenic Intergenic 31963 ENSMUSG00000081111.3 ENSMUSG00000081111 ENSMUST00000119397 Gm5913 processed_pseudogene Interval_69736 chr16 95945366 95946010 + 0 NA Intergenic Intergenic 45202 ENSMUSG00000022913.16 ENSMUSG00000022913 ENSMUST00000233134 Psmg1 protein_coding Interval_157011 chr8 64408213 64409313 + 0 NA exon (ENSMUSG00000109579.1, exon 3 of 3) lincRNA-exon (ENSMUSG00000109579.1, exon 3 of 3) 8337 ENSMUSG00000109579.1 ENSMUSG00000109579 ENSMUST00000211285 Gm35521 lincRNA Interval_4847 chr1 80212692 80214214 + 0 NA exon (ENSMUSG00000043230.2, exon 1 of 2) protein_coding-exon (ENSMUSG00000043230.2, exon 1 of 2) 5020 ENSMUSG00000043230.2 ENSMUSG00000043230 ENSMUST00000161427 Fam124b protein_coding Interval_50491 chr14 14036240 14037713 + 0 NA TTS (ENSMUSG00000021738.5) protein_coding-TTS (ENSMUSG00000021738.5) 23832 ENSMUSG00000021738.5 ENSMUSG00000021738 ENSMUST00000224315 Atxn7 protein_coding Interval_12331 chr1 192119062 192120269 + 0 NA intron (ENSMUSG00000037395.15, intron 3 of 6) protein_coding-intron (ENSMUSG00000037395.15, intron 8 of 9) 4620 ENSMUSG00000037395.15 ENSMUSG00000037395 ENSMUST00000193322 Rcor3 protein_coding Interval_123414 chr5 32377709 32377896 + 0 NA Intergenic Intergenic 15504 ENSMUSG00000107036.1 ENSMUSG00000107036 ENSMUST00000202171 Gm7596 lincRNA Interval_118415 chr4 131271906 131272238 + 0 NA Intergenic Intergenic 32795 ENSMUSG00000088041.1 ENSMUSG00000088041 ENSMUST00000157416 Gm25261 snoRNA Interval_172964 chrX 58003981 58004454 + 0 NA Intergenic Intergenic 14744 ENSMUSG00000093905.1 ENSMUSG00000093905 ENSMUST00000082977 Gm25023 snRNA Interval_166117 chr9 56843551 56844253 + 0 NA Intergenic Intergenic 20777 ENSMUSG00000045620.7 ENSMUSG00000045620 ENSMUST00000215694 Odf3l1 protein_coding Interval_66991 chr16 39101907 39102567 + 0 NA Intergenic Intergenic 86669 ENSMUSG00000116965.1 ENSMUSG00000116965 ENSMUST00000231748 Gm36742 lincRNA Interval_83924 chr19 5629328 5630366 + 0 NA Intergenic Intergenic -8097 ENSMUSG00000024927.8 ENSMUSG00000024927 ENSMUST00000237361 Rela protein_coding Interval_171625 chr9 119641770 119642492 + 0 NA intron (ENSMUSG00000034533.10, intron 14 of 26) protein_coding-intron (ENSMUSG00000034533.10, intron 15 of 27) 45908 ENSMUSG00000034533.10 ENSMUSG00000034533 ENSMUST00000213401 Scn10a protein_coding Interval_38834 chr12 83111801 83112977 + 0 NA intron (ENSMUSG00000021219.16, intron 14 of 16) protein_coding-intron (ENSMUSG00000021219.16, intron 13 of 14) 9727 ENSMUSG00000104380.1 ENSMUSG00000104380 ENSMUST00000193468 4933436F18Rik TEC Interval_160227 chr8 107270573 107271145 + 0 NA Intergenic Intergenic -7611 ENSMUSG00000057657.4 ENSMUSG00000057657 ENSMUST00000080443 Rps18-ps3 processed_pseudogene Interval_40185 chr12 102398546 102399070 + 0 NA intron (ENSMUSG00000021190.14, intron 9 of 12) protein_coding-intron (ENSMUSG00000021190.14, intron 10 of 13) 7338 ENSMUSG00000021190.14 ENSMUSG00000021190 ENSMUST00000146499 Lgmn protein_coding Interval_172971 chrX 58121285 58121883 + 0 NA Intergenic Intergenic 62902 ENSMUSG00000081837.1 ENSMUSG00000081837 ENSMUST00000121814 Gm14649 processed_pseudogene Interval_67904 chr16 59239367 59239954 + 0 NA Intergenic Intergenic 16340 ENSMUSG00000109537.1 ENSMUSG00000109537 ENSMUST00000207964 Olfr200-ps1 unprocessed_pseudogene Interval_116853 chr4 117705248 117705560 + 0 NA Intergenic Intergenic 5216 ENSMUSG00000086320.1 ENSMUSG00000086320 ENSMUST00000156081 Gm12840 lincRNA Interval_35133 chr12 17505801 17505998 + 0 NA Intergenic Intergenic -39073 ENSMUSG00000011179.8 ENSMUSG00000011179 ENSMUST00000222250 Odc1 protein_coding Interval_73035 chr17 34285638 34286072 + 0 NA exon (ENSMUSG00000036594.15, exon 2 of 4) protein_coding-exon (ENSMUSG00000036594.15, exon 2 of 4) 1936 ENSMUSG00000036594.15 ENSMUSG00000036594 ENSMUST00000165139 H2-Aa protein_coding Interval_15937 chr10 59466690 59467707 + 0 NA intron (ENSMUSG00000009647.13, intron 3 of 7) protein_coding-intron (ENSMUSG00000009647.13, intron 3 of 7) -36112 ENSMUSG00000009654.4 ENSMUSG00000009654 ENSMUST00000162493 Oit3 protein_coding Interval_162801 chr9 9229937 9230821 + 0 NA intron (ENSMUSG00000050730.17, intron 1 of 5) protein_coding-intron (ENSMUSG00000050730.17, intron 1 of 22) -5909 ENSMUSG00000085253.3 ENSMUSG00000085253 ENSMUST00000150263 Gm16833 antisense Interval_48296 chr13 97911078 97911310 + 0 NA intron (ENSMUSG00000021662.11, intron 27 of 27) protein_coding-intron (ENSMUSG00000021662.11, intron 35 of 35) -34532 ENSMUSG00000114474.1 ENSMUSG00000114474 ENSMUST00000225575 Gm34388 lincRNA Interval_40097 chr12 101143120 101144098 + 0 NA Intergenic Intergenic -5498 ENSMUSG00000092054.3 ENSMUSG00000092054 ENSMUST00000185083 Kif4-ps transcribed_processed_pseudogene Interval_89695 chr2 24701999 24702201 + 0 NA intron (ENSMUSG00000004113.18, intron 12 of 46) protein_coding-intron (ENSMUSG00000004113.18, intron 12 of 46) 27399 ENSMUSG00000083973.1 ENSMUSG00000083973 ENSMUST00000121558 Gm13459 processed_pseudogene Interval_12410 chr1 193165361 193165647 + 0 NA intron (ENSMUSG00000026638.15, intron 4 of 4) protein_coding-intron (ENSMUSG00000026638.15, intron 4 of 7) -2999 ENSMUSG00000026638.15 ENSMUSG00000026638 ENSMUST00000193772 Irf6 protein_coding Interval_16293 chr10 62019375 62020650 + 0 NA Intergenic Intergenic -3392 ENSMUSG00000112018.1 ENSMUSG00000112018 ENSMUST00000220135 Gm47919 TEC Interval_143712 chr7 15869399 15869565 + 0 NA exon (ENSMUSG00000041578.15, exon 3 of 4) protein_coding-exon (ENSMUSG00000041578.15, exon 3 of 4) 10390 ENSMUSG00000041578.15 ENSMUSG00000041578 ENSMUST00000132563 Crx protein_coding Interval_122848 chr5 26046509 26046720 + 0 NA Intergenic Intergenic -7056 ENSMUSG00000073119.3 ENSMUSG00000073119 ENSMUST00000079447 Speer4a protein_coding Interval_41163 chr12 111568714 111569351 + 0 NA Intergenic Intergenic 5308 ENSMUSG00000096995.2 ENSMUSG00000096995 ENSMUST00000221597 2810029C07Rik bidirectional_promoter_lncRNA Interval_117914 chr4 127020873 127022495 + 0 NA exon (ENSMUSG00000028820.13, exon 1 of 10) protein_coding-exon (ENSMUSG00000028820.13, exon 1 of 10) -1843 ENSMUSG00000028820.13 ENSMUSG00000028820 ENSMUST00000125453 Sfpq protein_coding Interval_98184 chr2 149573334 149574080 + 0 NA Intergenic Intergenic -7422 ENSMUSG00000089270.1 ENSMUSG00000089270 ENSMUST00000158645 Gm24551 snoRNA Interval_154470 chr8 18479536 18480630 + 0 NA Intergenic Intergenic 32562 ENSMUSG00000077675.1 ENSMUSG00000077675 ENSMUST00000104487 Gm24469 snoRNA Interval_104423 chr3 65517222 65518981 + 0 NA intron (ENSMUSG00000074580.11, intron 1 of 3) transcribed_processed_pseudogene-intron (ENSMUSG00000074580.11, intron 1 of 3) -7600 ENSMUSG00000087825.1 ENSMUSG00000087825 ENSMUST00000157200 Gm22279 snRNA Interval_58763 chr15 37921781 37923339 + 0 NA Intergenic Intergenic 21232 ENSMUSG00000085442.1 ENSMUSG00000085442 ENSMUST00000148102 Gm3362 processed_pseudogene Interval_170808 chr9 110905700 110905890 + 0 NA Intergenic Intergenic -9896 ENSMUSG00000105140.1 ENSMUSG00000105140 ENSMUST00000195890 Gm43127 TEC Interval_166743 chr9 62366603 62368765 + 0 NA intron (ENSMUSG00000032249.14, intron 1 of 3) protein_coding-intron (ENSMUSG00000032249.14, intron 1 of 6) 25220 ENSMUSG00000032249.14 ENSMUSG00000032249 ENSMUST00000145679 Anp32a protein_coding Interval_25689 chr11 50796186 50796713 + 0 NA exon (ENSMUSG00000036545.9, exon 21 of 22) protein_coding-exon (ENSMUSG00000036545.9, exon 21 of 22) -13202 ENSMUSG00000088205.1 ENSMUSG00000088205 ENSMUST00000157580 Gm23392 rRNA Interval_173594 chrX 100516807 100517269 + 0 NA TTS (ENSMUSG00000031221.7) protein_coding-TTS (ENSMUSG00000031221.7) -7800 ENSMUSG00000067597.5 ENSMUSG00000067597 ENSMUST00000037541 Dgat2l6 protein_coding Interval_149882 chr7 102209452 102211021 + 0 NA promoter-TSS (ENSMUSG00000063550.8) protein_coding-promoter-TSS (ENSMUSG00000063550.8) -12792 ENSMUSG00000030990.18 ENSMUSG00000030990 ENSMUST00000134621 Pgap2 protein_coding Interval_70906 chr17 15776252 15778298 + 0 NA Intergenic Intergenic 38740 ENSMUSG00000023852.14 ENSMUSG00000023852 ENSMUST00000173040 Chd1 protein_coding Interval_27876 chr11 70562118 70564122 + 0 NA promoter-TSS (ENSMUSG00000020827.18) protein_coding-promoter-TSS (ENSMUSG00000020827.18) 9160 ENSMUSG00000020828.13 ENSMUSG00000020828 ENSMUST00000146248 Pld2 protein_coding Interval_91332 chr2 37821993 37822227 + 0 NA intron (ENSMUSG00000035392.17, intron 18 of 18) protein_coding-intron (ENSMUSG00000035392.17, intron 19 of 21) 30939 ENSMUSG00000035403.10 ENSMUSG00000035403 ENSMUST00000137693 Crb2 protein_coding Interval_42960 chr13 21924434 21925433 + 0 NA promoter-TSS (ENSMUSG00000105839.1) miRNA-promoter-TSS (ENSMUSG00000105839.1) 83 ENSMUSG00000105839.1 ENSMUSG00000105839 ENSMUST00000196554 Gm44456 miRNA Interval_4371 chr1 73274566 73274741 + 0 NA intron (ENSMUSG00000101112.1, intron 2 of 2) lincRNA-intron (ENSMUSG00000101112.1, intron 2 of 2) 5589 ENSMUSG00000101112.1 ENSMUSG00000101112 ENSMUST00000190578 Gm29185 lincRNA Interval_3785 chr1 63088761 63089080 + 0 NA intron (ENSMUSG00000040865.15, intron 4 of 11) protein_coding-intron (ENSMUSG00000040865.15, intron 3 of 10) 15146 ENSMUSG00000081429.1 ENSMUSG00000081429 ENSMUST00000118179 Rps27-ps1 processed_pseudogene Interval_160439 chr8 109519896 109520127 + 0 NA intron (ENSMUSG00000031727.8, intron 4 of 19) protein_coding-intron (ENSMUSG00000031727.8, intron 5 of 20) 24967 ENSMUSG00000031727.8 ENSMUSG00000031727 ENSMUST00000212003 Pmfbp1 protein_coding Interval_6080 chr1 96240789 96241323 + 0 NA Intergenic Intergenic 25885 ENSMUSG00000080345.3 ENSMUSG00000080345 ENSMUST00000116695 Gm24586 miRNA Interval_59793 chr15 59314469 59315515 + 0 NA promoter-TSS (ENSMUSG00000022351.14) protein_coding-promoter-TSS (ENSMUSG00000022351.14) -85 ENSMUSG00000022351.14 ENSMUSG00000022351 ENSMUST00000161953 Sqle protein_coding Interval_98263 chr2 150643911 150644465 + 0 NA intron (ENSMUSG00000027452.11, intron 2 of 4) protein_coding-intron (ENSMUSG00000027452.11, intron 2 of 13) -6073 ENSMUSG00000027452.11 ENSMUSG00000027452 ENSMUST00000141785 Acss1 protein_coding Interval_168468 chr9 81494646 81495037 + 0 NA Intergenic Intergenic 39444 ENSMUSG00000098429.1 ENSMUSG00000098429 ENSMUST00000184676 Gm27226 lincRNA Interval_122876 chr5 26703312 26704430 + 0 NA Intergenic Intergenic 104433 ENSMUSG00000105491.1 ENSMUSG00000105491 ENSMUST00000200355 Gm42844 processed_pseudogene Interval_128068 chr5 110646251 110646615 + 0 NA Intergenic Intergenic 6947 ENSMUSG00000033294.11 ENSMUSG00000033294 ENSMUST00000199795 Noc4l protein_coding Interval_137682 chr6 79121034 79121361 + 0 NA Intergenic Intergenic 73081 ENSMUSG00000107772.1 ENSMUSG00000107772 ENSMUST00000203518 Gm5311 processed_pseudogene Interval_72122 chr17 28165314 28165599 + 0 NA promoter-TSS (ENSMUSG00000038677.14) protein_coding-promoter-TSS (ENSMUSG00000038677.14) -12002 ENSMUSG00000024220.14 ENSMUSG00000024220 ENSMUST00000151595 Zfp523 protein_coding Interval_91156 chr2 35539188 35540772 + 0 NA Intergenic Intergenic 18505 ENSMUSG00000086555.2 ENSMUSG00000086555 ENSMUST00000134679 Gm13446 processed_transcript Interval_116356 chr4 110151861 110153293 + 0 NA Intergenic Intergenic 134950 ENSMUSG00000028546.17 ENSMUSG00000028546 ENSMUST00000142722 Elavl4 protein_coding Interval_97026 chr2 130634521 130636401 + 0 NA exon (ENSMUSG00000037703.14, exon 5 of 5) protein_coding-exon (ENSMUSG00000037703.14, exon 5 of 5) 2634 ENSMUSG00000037703.14 ENSMUSG00000037703 ENSMUST00000045761 Lzts3 protein_coding Interval_38913 chr12 83758081 83759486 + 0 NA promoter-TSS (ENSMUSG00000113999.1) processed_pseudogene-promoter-TSS (ENSMUSG00000113999.1) -161 ENSMUSG00000113999.1 ENSMUSG00000113999 ENSMUST00000222400 Gm47681 processed_pseudogene Interval_162946 chr9 13652716 13653237 + 0 NA intron (ENSMUSG00000031925.17, intron 2 of 4) protein_coding-intron (ENSMUSG00000031925.17, intron 1 of 3) -9484 ENSMUSG00000031925.17 ENSMUSG00000031925 ENSMUST00000177755 Maml2 protein_coding Interval_165297 chr9 46110657 46110995 + 0 NA intron (ENSMUSG00000034135.15, intron 1 of 24) protein_coding-intron (ENSMUSG00000034135.15, intron 1 of 22) -12304 ENSMUSG00000034135.15 ENSMUSG00000034135 ENSMUST00000138338 Sik3 protein_coding Interval_147097 chr7 62812577 62812843 + 0 NA intron (ENSMUSG00000109344.1, intron 3 of 6) protein_coding-intron (ENSMUSG00000109344.1, intron 3 of 6) 10963 ENSMUSG00000109344.1 ENSMUSG00000109344 ENSMUST00000207359 A26c2 protein_coding Interval_146752 chr7 49923127 49923748 + 0 NA intron (ENSMUSG00000039728.15, intron 4 of 14) protein_coding-intron (ENSMUSG00000039728.15, intron 5 of 15) 13138 ENSMUSG00000039728.15 ENSMUSG00000039728 ENSMUST00000107605 Slc6a5 protein_coding Interval_13251 chr10 13596125 13597636 + 0 NA Intergenic Intergenic -30318 ENSMUSG00000112055.1 ENSMUSG00000112055 ENSMUST00000219684 Gm48773 lincRNA Interval_76650 chr17 83131984 83132616 + 0 NA Intergenic Intergenic -11559 ENSMUSG00000117509.1 ENSMUSG00000117509 ENSMUST00000234289 Gm46606 lincRNA Interval_97455 chr2 136720146 136720494 + 0 NA intron (ENSMUSG00000027273.13, intron 1 of 2) protein_coding-intron (ENSMUSG00000027273.13, intron 1 of 7) 6866 ENSMUSG00000027273.13 ENSMUSG00000027273 ENSMUST00000110098 Snap25 protein_coding Interval_49362 chr13 111469728 111469914 + 0 NA intron (ENSMUSG00000116016.1, intron 1 of 7) protein_coding-intron (ENSMUSG00000032745.18, intron 2 of 12) -16398 ENSMUSG00000032745.18 ENSMUSG00000032745 ENSMUST00000129638 Gpbp1 protein_coding Interval_3444 chr1 58392301 58394025 + 0 NA promoter-TSS (ENSMUSG00000051223.14) protein_coding-promoter-TSS (ENSMUSG00000051223.14) 39 ENSMUSG00000051223.14 ENSMUSG00000051223 ENSMUST00000186949 Bzw1 protein_coding Interval_117480 chr4 124028604 124028902 + 0 NA Intergenic Intergenic 102519 ENSMUSG00000082515.1 ENSMUSG00000082515 ENSMUST00000118389 Gm12902 processed_pseudogene Interval_44991 chr13 51180460 51180997 + 0 NA Intergenic Intergenic 9669 ENSMUSG00000021396.5 ENSMUSG00000021396 ENSMUST00000221339 Nxnl2 protein_coding Interval_163534 chr9 21947150 21948378 + 0 NA exon (ENSMUSG00000040563.13, exon 10 of 10) protein_coding-exon (ENSMUSG00000040563.13, exon 10 of 10) -7991 ENSMUSG00000051238.6 ENSMUSG00000051238 ENSMUST00000053583 Swsap1 protein_coding Interval_6136 chr1 97833205 97833894 + 0 NA intron (ENSMUSG00000026335.16, intron 4 of 5) protein_coding-intron (ENSMUSG00000026335.16, intron 22 of 25) 46516 ENSMUSG00000104140.1 ENSMUSG00000104140 ENSMUST00000192914 Gm37140 TEC Interval_139278 chr6 97826405 97827066 + 0 NA intron (ENSMUSG00000035158.15, intron 1 of 9) protein_coding-intron (ENSMUSG00000035158.15, intron 1 of 9) 36223 ENSMUSG00000089464.1 ENSMUSG00000089464 ENSMUST00000158839 Gm23703 snoRNA Interval_47041 chr13 74633015 74633610 + 0 NA Intergenic Intergenic -23278 ENSMUSG00000113204.1 ENSMUSG00000113204 ENSMUST00000222064 Gm46430 lincRNA Interval_96405 chr2 122233782 122235280 + 0 NA promoter-TSS (ENSMUSG00000027227.7) protein_coding-promoter-TSS (ENSMUSG00000027227.7) -218 ENSMUSG00000027227.7 ENSMUSG00000027227 ENSMUST00000110551 Sord protein_coding Interval_24090 chr11 30160750 30161570 + 0 NA intron (ENSMUSG00000020315.18, intron 2 of 30) protein_coding-intron (ENSMUSG00000020315.18, intron 2 of 35) 54766 ENSMUSG00000101872.1 ENSMUSG00000101872 ENSMUST00000186216 Gm29237 antisense Interval_137938 chr6 83536534 83537055 + 0 NA promoter-TSS (ENSMUSG00000059430.14) protein_coding-promoter-TSS (ENSMUSG00000059430.14) -571 ENSMUSG00000059430.14 ENSMUSG00000059430 ENSMUST00000152029 Actg2 protein_coding Interval_116846 chr4 117658431 117659291 + 0 NA intron (ENSMUSG00000033423.16, intron 7 of 7) protein_coding-intron (ENSMUSG00000033423.16, intron 8 of 8) 23392 ENSMUSG00000009640.11 ENSMUSG00000009640 ENSMUST00000127750 Dmap1 protein_coding Interval_166273 chr9 57939929 57941422 + 0 NA intron (ENSMUSG00000038264.8, intron 1 of 3) protein_coding-intron (ENSMUSG00000038264.8, intron 1 of 13) 563 ENSMUSG00000038264.8 ENSMUSG00000038264 ENSMUST00000043059 Sema7a protein_coding Interval_159237 chr8 92055762 92056165 + 0 NA Intergenic Intergenic 16046 ENSMUSG00000065636.1 ENSMUSG00000065636 ENSMUST00000083702 Gm24254 snRNA Interval_68594 chr16 80212896 80214100 + 0 NA Intergenic Intergenic 76146 ENSMUSG00000088476.1 ENSMUSG00000088476 ENSMUST00000157851 Gm23083 snoRNA Interval_166661 chr9 61675304 61675557 + 0 NA Intergenic Intergenic -87654 ENSMUSG00000111739.1 ENSMUSG00000111739 ENSMUST00000213572 Gm47241 processed_pseudogene Interval_136185 chr6 51852644 51852893 + 0 NA Intergenic Intergenic 19161 ENSMUSG00000059182.7 ENSMUSG00000059182 ENSMUST00000203313 Skap2 protein_coding Interval_112782 chr4 44968193 44968937 + 0 NA intron (ENSMUSG00000086000.1, intron 1 of 1) antisense-intron (ENSMUSG00000086000.1, intron 1 of 1) 796 ENSMUSG00000086000.1 ENSMUSG00000086000 ENSMUST00000150111 Gm12493 antisense Interval_131751 chr5 139655566 139655885 + 0 NA Intergenic Intergenic -45922 ENSMUSG00000104637.1 ENSMUSG00000104637 ENSMUST00000198319 Gm42424 processed_pseudogene Interval_128290 chr5 112307583 112308541 + 0 NA promoter-TSS (ENSMUSG00000029344.15) protein_coding-promoter-TSS (ENSMUSG00000029344.15) -18359 ENSMUSG00000029345.13 ENSMUSG00000029345 ENSMUST00000126736 Tfip11 protein_coding Interval_101870 chr3 10301001 10302106 + 0 NA promoter-TSS (ENSMUSG00000027530.15) protein_coding-promoter-TSS (ENSMUSG00000027530.15) -3238 ENSMUSG00000104092.2 ENSMUSG00000104092 ENSMUST00000194572 A930014E01Rik TEC Interval_130361 chr5 126703973 126704229 + 0 NA Intergenic Intergenic -2813 ENSMUSG00000105673.1 ENSMUSG00000105673 ENSMUST00000197352 1700081B01Rik lincRNA Interval_84076 chr19 7070121 7070342 + 0 NA intron (ENSMUSG00000036278.7, intron 3 of 10) protein_coding-intron (ENSMUSG00000036278.7, intron 3 of 10) 13421 ENSMUSG00000036278.7 ENSMUSG00000036278 ENSMUST00000040261 Macrod1 protein_coding Interval_170466 chr9 108159230 108160814 + 0 NA promoter-TSS (ENSMUSG00000103658.1) processed_pseudogene-promoter-TSS (ENSMUSG00000103658.1) -257 ENSMUSG00000103658.1 ENSMUSG00000103658 ENSMUST00000191845 Gm37201 processed_pseudogene Interval_58492 chr15 35186245 35186669 + 0 NA Intergenic Intergenic -14347 ENSMUSG00000115345.1 ENSMUSG00000115345 ENSMUST00000228112 Gm33497 lincRNA Interval_100303 chr2 168280520 168281870 + 0 NA promoter-TSS (ENSMUSG00000074575.4) protein_coding-promoter-TSS (ENSMUSG00000074575.4) 541 ENSMUSG00000074575.4 ENSMUSG00000074575 ENSMUST00000131749 Kcng1 protein_coding Interval_21221 chr10 127296158 127296466 + 0 NA TTS (ENSMUSG00000025408.15) protein_coding-TTS (ENSMUSG00000025408.15) 5483 ENSMUSG00000116429.1 ENSMUSG00000116429 ENSMUST00000230446 Ddit3 protein_coding Interval_84334 chr19 10182269 10183740 + 0 NA promoter-TSS (ENSMUSG00000010663.5) protein_coding-promoter-TSS (ENSMUSG00000010663.5) -6843 ENSMUSG00000117700.1 ENSMUSG00000117700 ENSMUST00000235345 Gm50359 processed_pseudogene Interval_160237 chr8 107384072 107385236 + 0 NA Intergenic Intergenic 18552 ENSMUSG00000003849.8 ENSMUSG00000003849 ENSMUST00000003947 Nqo1 protein_coding Interval_159903 chr8 105040555 105040821 + 0 NA Intergenic Intergenic -4478 ENSMUSG00000110549.1 ENSMUSG00000110549 ENSMUST00000212962 Gm45725 unprocessed_pseudogene Interval_166204 chr9 57483687 57483923 + 0 NA promoter-TSS (ENSMUSG00000074280.6) processed_pseudogene-promoter-TSS (ENSMUSG00000074280.6) -5 ENSMUSG00000111414.1 ENSMUSG00000111414 ENSMUST00000216621 Gm18103 processed_pseudogene Interval_33567 chr11 117254340 117255227 + 0 NA intron (ENSMUSG00000059248.13, intron 1 of 10) protein_coding-intron (ENSMUSG00000059248.13, intron 2 of 11) 8654 ENSMUSG00000086050.1 ENSMUSG00000086050 ENSMUST00000123882 Gm16045 antisense Interval_98915 chr2 155986744 155986999 + 0 NA TTS (ENSMUSG00000038241.16) protein_coding-TTS (ENSMUSG00000038241.16) 988 ENSMUSG00000038241.16 ENSMUSG00000038241 ENSMUST00000128683 Cep250 protein_coding Interval_119802 chr4 140079027 140079342 + 0 NA intron (ENSMUSG00000040972.8, intron 3 of 9) protein_coding-intron (ENSMUSG00000040972.8, intron 3 of 9) -52693 ENSMUSG00000085968.1 ENSMUSG00000085968 ENSMUST00000135858 Gm13027 antisense Interval_164867 chr9 42616564 42617148 + 0 NA intron (ENSMUSG00000032017.14, intron 11 of 20) protein_coding-intron (ENSMUSG00000032017.14, intron 9 of 18) -96025 ENSMUSG00000093745.1 ENSMUSG00000093745 ENSMUST00000176676 Gm24420 misc_RNA Interval_106107 chr3 93162677 93163597 + 0 NA Intergenic Intergenic 10959 ENSMUSG00000103902.1 ENSMUSG00000103902 ENSMUST00000192830 Gm37501 processed_pseudogene Interval_27608 chr11 69026388 69027328 + 0 NA promoter-TSS (ENSMUSG00000020898.18) protein_coding-promoter-TSS (ENSMUSG00000020898.18) -7663 ENSMUSG00000020898.18 ENSMUSG00000020898 ENSMUST00000161271 Ctc1 protein_coding Interval_49355 chr13 111437192 111437910 + 0 NA TTS (ENSMUSG00000032745.18) protein_coding-TTS (ENSMUSG00000032745.18) 15872 ENSMUSG00000032745.18 ENSMUSG00000032745 ENSMUST00000129638 Gpbp1 protein_coding Interval_16813 chr10 68297272 68297644 + 0 NA Intergenic Intergenic -15550 ENSMUSG00000112275.1 ENSMUSG00000112275 ENSMUST00000218333 Gm47078 lincRNA Interval_115698 chr4 102511484 102511698 + 0 NA intron (ENSMUSG00000028525.16, intron 7 of 16) protein_coding-intron (ENSMUSG00000028525.16, intron 5 of 14) -225221 ENSMUSG00000077260.1 ENSMUSG00000077260 ENSMUST00000104072 Gm24869 snoRNA Interval_41729 chr12 118481468 118481700 + 0 NA Intergenic Intergenic 23450 ENSMUSG00000065348.1 ENSMUSG00000065348 ENSMUST00000083414 Gm25577 snRNA Interval_121285 chr4 154727524 154727788 + 0 NA Intergenic Intergenic -59789 ENSMUSG00000051276.4 ENSMUSG00000051276 ENSMUST00000060062 Actrt2 protein_coding Interval_78427 chr18 12750411 12751350 + 0 NA exon (ENSMUSG00000024430.14, exon 4 of 6) protein_coding-exon (ENSMUSG00000024430.14, exon 4 of 6) -7621 ENSMUSG00000083332.1 ENSMUSG00000083332 ENSMUST00000121453 Gm7599 processed_pseudogene Interval_131162 chr5 135505251 135505960 + 0 NA intron (ENSMUSG00000039959.13, intron 1 of 1) protein_coding-intron (ENSMUSG00000039959.13, intron 1 of 30) -32186 ENSMUSG00000106758.1 ENSMUSG00000106758 ENSMUST00000201839 Gm42731 TEC Interval_82663 chr18 75757446 75758052 + 0 NA Intergenic Intergenic -9394 ENSMUSG00000118164.1 ENSMUSG00000118164 ENSMUST00000237826 Gm20570 processed_pseudogene Interval_69196 chr16 91262533 91263112 + 0 NA exon (ENSMUSG00000102958.1, exon 2 of 2) TEC-exon (ENSMUSG00000102958.1, exon 2 of 2) 324 ENSMUSG00000102958.1 ENSMUSG00000102958 ENSMUST00000195507 Gm37016 TEC Interval_15409 chr10 45650013 45650364 + 0 NA intron (ENSMUSG00000038822.15, intron 10 of 23) protein_coding-intron (ENSMUSG00000038822.15, intron 10 of 23) -6767 ENSMUSG00000111491.1 ENSMUSG00000111491 ENSMUST00000215636 Gm47503 TEC Interval_154845 chr8 24337855 24339172 + 0 NA Intergenic Intergenic 20923 ENSMUSG00000109299.1 ENSMUSG00000109299 ENSMUST00000207438 Gm45164 lincRNA Interval_49814 chr13 116309067 116310687 + 0 NA promoter-TSS (ENSMUSG00000042258.13) protein_coding-promoter-TSS (ENSMUSG00000042258.13) -192 ENSMUSG00000042258.13 ENSMUSG00000042258 ENSMUST00000177469 Isl1 protein_coding Interval_130107 chr5 124317294 124318170 + 0 NA intron (ENSMUSG00000038126.17, intron 2 of 10) protein_coding-intron (ENSMUSG00000038126.17, intron 3 of 21) 10120 ENSMUSG00000038126.17 ENSMUSG00000038126 ENSMUST00000156013 Mphosph9 protein_coding Interval_30735 chr11 96189994 96190676 + 0 NA Intergenic Intergenic -3981 ENSMUSG00000049604.3 ENSMUSG00000049604 ENSMUST00000062709 Hoxb13 protein_coding Interval_30559 chr11 95116915 95117289 + 0 NA Intergenic Intergenic -3017 ENSMUSG00000001510.8 ENSMUSG00000001510 ENSMUST00000092768 Dlx3 protein_coding Interval_138280 chr6 86848554 86850093 + 0 NA promoter-TSS (ENSMUSG00000057230.14) protein_coding-promoter-TSS (ENSMUSG00000057230.14) 117 ENSMUSG00000100164.1 ENSMUSG00000100164 ENSMUST00000185414 2610306M01Rik bidirectional_promoter_lncRNA Interval_64646 chr16 13861090 13861554 + 0 NA intron (ENSMUSG00000022680.14, intron 8 of 22) protein_coding-intron (ENSMUSG00000022680.14, intron 8 of 23) 41660 ENSMUSG00000022680.14 ENSMUSG00000022680 ENSMUST00000137715 Pdxdc1 protein_coding Interval_65471 chr16 22547774 22548964 + 0 NA promoter-TSS (ENSMUSG00000089663.1) antisense-promoter-TSS (ENSMUSG00000089663.1) -184 ENSMUSG00000089663.1 ENSMUSG00000089663 ENSMUST00000159953 Gm15651 antisense Interval_145351 chr7 34159375 34159607 + 0 NA intron (ENSMUSG00000052997.15, intron 1 of 5) protein_coding-intron (ENSMUSG00000052997.15, intron 5 of 16) 4850 ENSMUSG00000052997.15 ENSMUSG00000052997 ENSMUST00000206651 Uba2 protein_coding Interval_171353 chr9 116912300 116913074 + 0 NA intron (ENSMUSG00000039607.17, intron 4 of 4) protein_coding-intron (ENSMUSG00000039607.17, intron 4 of 12) -146471 ENSMUSG00000092184.1 ENSMUSG00000092184 ENSMUST00000172565 Gm18489 processed_pseudogene Interval_31285 chr11 99334858 99335198 + 0 NA exon (ENSMUSG00000075570.2, exon 4 of 8) protein_coding-exon (ENSMUSG00000075570.2, exon 4 of 8) 2937 ENSMUSG00000075570.2 ENSMUSG00000075570 ENSMUST00000100482 Krt26 protein_coding Interval_54023 chr14 64587179 64587536 + 0 NA promoter-TSS (ENSMUSG00000097545.7) lincRNA-promoter-TSS (ENSMUSG00000097545.7) -2338 ENSMUSG00000097545.7 ENSMUSG00000097545 ENSMUST00000186703 Mir124a-1hg lincRNA Interval_76707 chr17 83611928 83612285 + 0 NA intron (ENSMUSG00000045053.2, intron 1 of 1) protein_coding-intron (ENSMUSG00000045053.2, intron 1 of 1) 19789 ENSMUSG00000045053.2 ENSMUSG00000045053 ENSMUST00000051482 Kcng3 protein_coding Interval_167779 chr9 72677025 72677892 + 0 NA intron (ENSMUSG00000032216.15, intron 4 of 29) protein_coding-intron (ENSMUSG00000032216.15, intron 4 of 28) -9766 ENSMUSG00000104273.1 ENSMUSG00000104273 ENSMUST00000195338 A530064N14Rik TEC Interval_13878 chr10 24172961 24174714 + 0 NA intron (ENSMUSG00000019998.6, intron 2 of 9) protein_coding-intron (ENSMUSG00000019998.6, intron 2 of 9) 24510 ENSMUSG00000019998.6 ENSMUSG00000019998 ENSMUST00000219553 Stx7 protein_coding Interval_16614 chr10 65701254 65702012 + 0 NA Intergenic Intergenic 70566 ENSMUSG00000112720.1 ENSMUSG00000112720 ENSMUST00000218592 Gm19116 processed_pseudogene Interval_21989 chr11 5602766 5603233 + 0 NA intron (ENSMUSG00000020481.15, intron 10 of 25) protein_coding-intron (ENSMUSG00000020481.15, intron 8 of 26) 28916 ENSMUSG00000020481.15 ENSMUSG00000020481 ENSMUST00000137933 Ankrd36 protein_coding Interval_92154 chr2 54435778 54437674 + 0 NA exon (ENSMUSG00000060988.12, exon 1 of 13) protein_coding-exon (ENSMUSG00000060988.12, exon 1 of 13) 235 ENSMUSG00000060988.12 ENSMUSG00000060988 ENSMUST00000068595 Galnt13 protein_coding Interval_21695 chr11 3753636 3754136 + 0 NA intron (ENSMUSG00000020435.17, intron 2 of 2) protein_coding-intron (ENSMUSG00000020435.17, intron 2 of 13) 20846 ENSMUSG00000020435.17 ENSMUSG00000020435 ENSMUST00000135250 Osbp2 protein_coding Interval_42309 chr13 11959226 11959640 + 0 NA intron (ENSMUSG00000021313.16, intron 1 of 2) protein_coding-intron (ENSMUSG00000021313.16, intron 1 of 104) 19875 ENSMUSG00000098110.1 ENSMUSG00000098110 ENSMUST00000182176 Gm26956 processed_pseudogene Interval_12040 chr1 189022889 189023202 + 0 NA Intergenic Intergenic -15204 ENSMUSG00000026608.13 ENSMUSG00000026608 ENSMUST00000193273 Kctd3 protein_coding Interval_169950 chr9 103154694 103156531 + 0 NA intron (ENSMUSG00000032549.7, intron 2 of 7) protein_coding-intron (ENSMUSG00000032549.7, intron 2 of 7) 35244 ENSMUSG00000102461.1 ENSMUSG00000102461 ENSMUST00000195473 Gm37166 TEC Interval_137306 chr6 71211564 71212151 + 0 NA Intergenic Intergenic 5017 ENSMUSG00000055027.17 ENSMUSG00000055027 ENSMUST00000173297 Smyd1 protein_coding Interval_134569 chr6 29655834 29656234 + 0 NA Intergenic Intergenic -51994 ENSMUSG00000001763.14 ENSMUSG00000001763 ENSMUST00000137925 Tspan33 protein_coding Interval_22346 chr11 8983410 8983634 + 0 NA Intergenic Intergenic 27606 ENSMUSG00000020413.11 ENSMUSG00000020413 ENSMUST00000127578 Hus1 protein_coding Interval_109758 chr3 146655238 146656511 + 0 NA intron (ENSMUSG00000048652.12, intron 3 of 3) protein_coding-intron (ENSMUSG00000048652.12, intron 3 of 3) -4559 ENSMUSG00000090202.1 ENSMUSG00000090202 ENSMUST00000149825 4930503B20Rik protein_coding Interval_73050 chr17 34397917 34399677 + 0 NA promoter-TSS (ENSMUSG00000057246.16) protein_coding-promoter-TSS (ENSMUSG00000057246.16) 3221 ENSMUSG00000082103.2 ENSMUSG00000082103 ENSMUST00000118085 Gm15320 transcribed_unprocessed_pseudogene Interval_79300 chr18 30267112 30268463 + 0 NA intron (ENSMUSG00000117465.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000117465.1, intron 1 of 1) 538 ENSMUSG00000117465.1 ENSMUSG00000117465 ENSMUST00000234467 Gm49980 lincRNA Interval_28925 chr11 79296314 79296969 + 0 NA exon (ENSMUSG00000055072.2, exon 1 of 1) TEC-exon (ENSMUSG00000055072.2, exon 1 of 1) 265 ENSMUSG00000055072.2 ENSMUSG00000055072 ENSMUST00000068448 Gm9964 TEC Interval_146731 chr7 49777883 49780264 + 0 NA promoter-TSS (ENSMUSG00000030505.17) protein_coding-promoter-TSS (ENSMUSG00000030505.17) -5128 ENSMUSG00000030505.17 ENSMUSG00000030505 ENSMUST00000130907 Prmt3 protein_coding Interval_146725 chr7 49752446 49753486 + 0 NA Intergenic Intergenic -6149 ENSMUSG00000039745.8 ENSMUSG00000039745 ENSMUST00000207895 Htatip2 protein_coding Interval_48007 chr13 95064592 95065653 + 0 NA intron (ENSMUSG00000021684.17, intron 7 of 18) protein_coding-intron (ENSMUSG00000021684.17, intron 9 of 20) 40821 ENSMUSG00000113070.1 ENSMUSG00000113070 ENSMUST00000220923 Gm48420 antisense Interval_115112 chr4 90235502 90236006 + 0 NA Intergenic Intergenic 16934 ENSMUSG00000070902.5 ENSMUSG00000070902 ENSMUST00000080541 Zfp352 protein_coding Interval_53180 chr14 54956489 54957247 + 0 NA TTS (ENSMUSG00000040752.16) protein_coding-TTS (ENSMUSG00000040752.16) -7726 ENSMUSG00000065432.1 ENSMUSG00000065432 ENSMUST00000083498 Mir208a miRNA Interval_61282 chr15 80510383 80511023 + 0 NA intron (ENSMUSG00000050439.7, intron 4 of 6) protein_coding-intron (ENSMUSG00000050439.7, intron 3 of 5) 34811 ENSMUSG00000116345.1 ENSMUSG00000116345 ENSMUST00000230279 Gm19141 processed_pseudogene Interval_88193 chr19 60556449 60556831 + 0 NA intron (ENSMUSG00000033417.16, intron 3 of 7) protein_coding-intron (ENSMUSG00000033417.16, intron 3 of 8) -19091 ENSMUSG00000033417.16 ENSMUSG00000033417 ENSMUST00000237682 Cacul1 protein_coding Interval_126440 chr5 88588671 88588896 + 0 NA intron (ENSMUSG00000029291.11, intron 1 of 2) protein_coding-intron (ENSMUSG00000029291.11, intron 1 of 12) 34321 ENSMUSG00000070697.4 ENSMUSG00000070697 ENSMUST00000090413 Utp3 protein_coding Interval_103875 chr3 54106550 54107207 + 0 NA Intergenic Intergenic -49737 ENSMUSG00000027748.11 ENSMUSG00000027748 ENSMUST00000200341 Trpc4 protein_coding Interval_145502 chr7 35251991 35252544 + 0 NA exon (ENSMUSG00000118454.1, exon 7 of 10) protein_coding-exon (ENSMUSG00000118454.1, exon 7 of 10) 23266 ENSMUSG00000118454.1 ENSMUSG00000118454 ENSMUST00000238407 Wdr88 protein_coding Interval_174388 chrX 151046646 151047932 + 0 NA exon (ENSMUSG00000025265.14, exon 1 of 18) protein_coding-exon (ENSMUSG00000025265.14, exon 1 of 18) -29967 ENSMUSG00000025266.11 ENSMUSG00000025266 ENSMUST00000156233 Gnl3l protein_coding Interval_116163 chr4 108300506 108302847 + 0 NA promoter-TSS (ENSMUSG00000034636.9) protein_coding-promoter-TSS (ENSMUSG00000034636.9) 9475 ENSMUSG00000083957.1 ENSMUSG00000083957 ENSMUST00000117326 Gm12742 processed_pseudogene Interval_152801 chr7 137784036 137784409 + 0 NA Intergenic Intergenic 49956 ENSMUSG00000110090.1 ENSMUSG00000110090 ENSMUST00000209434 Gm45682 lincRNA Interval_127322 chr5 102864021 102864340 + 0 NA intron (ENSMUSG00000057315.14, intron 3 of 3) protein_coding-intron (ENSMUSG00000057315.14, intron 2 of 6) 55131 ENSMUSG00000057315.14 ENSMUSG00000057315 ENSMUST00000070000 Arhgap24 protein_coding Interval_17812 chr10 80214712 80216167 + 0 NA Intergenic Intergenic -18821 ENSMUSG00000020156.16 ENSMUSG00000020156 ENSMUST00000136791 Pwwp3a protein_coding Interval_116155 chr4 108201495 108201734 + 0 NA intron (ENSMUSG00000034645.14, intron 3 of 13) protein_coding-intron (ENSMUSG00000034645.14, intron 3 of 13) 16308 ENSMUSG00000034645.14 ENSMUSG00000034645 ENSMUST00000106690 Zyg11a protein_coding Interval_111764 chr4 27988055 27988403 + 0 NA Intergenic Intergenic 8676 ENSMUSG00000080175.2 ENSMUSG00000080175 ENSMUST00000116350 Tpm3-rs2 processed_pseudogene Interval_110134 chr3 153631588 153632404 + 0 NA intron (ENSMUSG00000052544.9, intron 1 of 4) protein_coding-intron (ENSMUSG00000052544.9, intron 1 of 2) 10294 ENSMUSG00000089376.1 ENSMUSG00000089376 ENSMUST00000158751 Gm22136 misc_RNA Interval_120918 chr4 151618463 151619272 + 0 NA intron (ENSMUSG00000014592.21, intron 3 of 24) protein_coding-intron (ENSMUSG00000014592.21, intron 3 of 23) 242397 ENSMUSG00000085593.1 ENSMUSG00000085593 ENSMUST00000129097 4930589P08Rik antisense Interval_13624 chr10 20246824 20247043 + 0 NA intron (ENSMUSG00000019996.17, intron 5 of 6) protein_coding-intron (ENSMUSG00000019996.17, intron 5 of 17) 38443 ENSMUSG00000111356.1 ENSMUSG00000111356 ENSMUST00000216127 Rpl32l processed_pseudogene Interval_70166 chr17 5903462 5904322 + 0 NA intron (ENSMUSG00000002365.10, intron 6 of 17) protein_coding-intron (ENSMUSG00000002365.10, intron 6 of 17) -35195 ENSMUSG00000116734.1 ENSMUSG00000116734 ENSMUST00000231634 Gm8376 processed_pseudogene Interval_165571 chr9 49653210 49654919 + 0 NA intron (ENSMUSG00000039542.16, intron 1 of 1) protein_coding-intron (ENSMUSG00000039542.16, intron 1 of 15) 135776 ENSMUSG00000079564.3 ENSMUSG00000079564 ENSMUST00000215070 Gm11149 antisense Interval_35520 chr12 24251563 24253000 + 0 NA promoter-TSS (ENSMUSG00000112975.1) processed_pseudogene-promoter-TSS (ENSMUSG00000112975.1) -100 ENSMUSG00000112975.1 ENSMUSG00000112975 ENSMUST00000169148 Gm21297 processed_pseudogene Interval_130730 chr5 130009550 130010234 + 0 NA Intergenic Intergenic -7064 ENSMUSG00000025534.17 ENSMUSG00000025534 ENSMUST00000122994 Gusb protein_coding Interval_17676 chr10 79066682 79067519 + 0 NA TTS (ENSMUSG00000060301.6) protein_coding-TTS (ENSMUSG00000060301.6) 30425 ENSMUSG00000060301.6 ENSMUSG00000060301 ENSMUST00000219729 2610008E11Rik protein_coding Interval_70230 chr17 6867848 6869380 + 0 NA Intergenic Intergenic 26723 ENSMUSG00000076218.1 ENSMUSG00000076218 ENSMUST00000102263 Mir692-1 miRNA Interval_128469 chr5 113492680 113492966 + 0 NA exon (ENSMUSG00000063430.9, exon 1 of 1) protein_coding-exon (ENSMUSG00000063430.9, exon 1 of 1) -85965 ENSMUSG00000063430.9 ENSMUSG00000063430 ENSMUST00000198673 Wscd2 protein_coding Interval_108503 chr3 127762605 127763347 + 0 NA intron (ENSMUSG00000028028.11, intron 2 of 2) protein_coding-intron (ENSMUSG00000028028.11, intron 1 of 13) -27828 ENSMUSG00000046688.14 ENSMUSG00000046688 ENSMUST00000171621 Tifa protein_coding Interval_40039 chr12 100732724 100733145 + 0 NA Intergenic Intergenic -7814 ENSMUSG00000021180.9 ENSMUSG00000021180 ENSMUST00000222347 Rps6ka5 protein_coding Interval_81020 chr18 53033012 53033241 + 0 NA Intergenic Intergenic 80577 ENSMUSG00000118195.1 ENSMUSG00000118195 ENSMUST00000235787 Gm8572 processed_pseudogene Interval_114450 chr4 77979342 77980073 + 0 NA intron (ENSMUSG00000028399.18, intron 1 of 6) protein_coding-intron (ENSMUSG00000028399.18, intron 1 of 14) -232248 ENSMUSG00000092492.1 ENSMUSG00000092492 ENSMUST00000173049 B230208B08Rik processed_transcript Interval_14723 chr10 39388465 39388733 + 0 NA intron (ENSMUSG00000019843.14, intron 1 of 12) protein_coding-intron (ENSMUSG00000019843.14, intron 1 of 13) -31410 ENSMUSG00000019843.14 ENSMUSG00000019843 ENSMUST00000123205 Fyn protein_coding Interval_113852 chr4 59362540 59363310 + 0 NA promoter-TSS (ENSMUSG00000038578.15) protein_coding-promoter-TSS (ENSMUSG00000038578.15) 5941 ENSMUSG00000083979.1 ENSMUSG00000083979 ENSMUST00000117967 Gm12527 processed_pseudogene Interval_147967 chr7 75943587 75943830 + 0 NA Intergenic Intergenic -57116 ENSMUSG00000108495.1 ENSMUSG00000108495 ENSMUST00000206543 Gm45139 TEC Interval_174333 chrX 144601358 144601684 + 0 NA intron (ENSMUSG00000041710.4, intron 1 of 5) protein_coding-intron (ENSMUSG00000041710.4, intron 1 of 10) -45184 ENSMUSG00000082106.3 ENSMUSG00000082106 ENSMUST00000117991 Mageb16-ps1 processed_pseudogene Interval_34479 chr12 4544942 4545157 + 0 NA Intergenic Intergenic 20936 ENSMUSG00000112422.1 ENSMUSG00000112422 ENSMUST00000218081 Gm31938 lincRNA Interval_367 chr1 4611469 4612220 + 0 NA TTS (ENSMUSG00000102735.1) processed_pseudogene-TTS (ENSMUSG00000102735.1) 1373 ENSMUSG00000102735.1 ENSMUSG00000102735 ENSMUST00000192738 Gm7369 processed_pseudogene Interval_51738 chr14 31796798 31797004 + 0 NA intron (ENSMUSG00000014496.8, intron 1 of 27) protein_coding-intron (ENSMUSG00000014496.8, intron 1 of 27) -5968 ENSMUSG00000115812.1 ENSMUSG00000115812 ENSMUST00000228722 Gm49309 transcribed_processed_pseudogene Interval_73706 chr17 42900584 42901365 + 0 NA Intergenic Intergenic -69944 ENSMUSG00000061665.7 ENSMUSG00000061665 ENSMUST00000233626 Cd2ap protein_coding Interval_138587 chr6 89631777 89632414 + 0 NA Intergenic Intergenic -11893 ENSMUSG00000000811.13 ENSMUSG00000000811 ENSMUST00000101171 Txnrd3 protein_coding Interval_41981 chr13 5857452 5857811 + 0 NA promoter-TSS (ENSMUSG00000100625.7) lincRNA-promoter-TSS (ENSMUSG00000100625.7) -70 ENSMUSG00000100625.7 ENSMUSG00000100625 ENSMUST00000223142 1700016G22Rik lincRNA Interval_16550 chr10 63573517 63575022 + 0 NA promoter-TSS (ENSMUSG00000060843.11) protein_coding-promoter-TSS (ENSMUSG00000060843.11) -152480 ENSMUSG00000048185.5 ENSMUSG00000048185 ENSMUST00000054760 Gm7075 protein_coding Interval_174266 chrX 142553437 142554483 + 0 NA Intergenic Intergenic -20090 ENSMUSG00000081750.3 ENSMUSG00000081750 ENSMUST00000117247 Gm4995 processed_pseudogene Interval_157436 chr8 70352572 70353972 + 0 NA promoter-TSS (ENSMUSG00000058301.8) protein_coding-promoter-TSS (ENSMUSG00000058301.8) -61 ENSMUSG00000058301.8 ENSMUSG00000058301 ENSMUST00000075666 Upf1 protein_coding Interval_67064 chr16 42434824 42435076 + 0 NA Intergenic Intergenic -131481 ENSMUSG00000098300.1 ENSMUSG00000098300 ENSMUST00000184886 Mir6540 miRNA Interval_81046 chr18 53280296 53280554 + 0 NA intron (ENSMUSG00000024535.16, intron 1 of 3) protein_coding-intron (ENSMUSG00000024535.16, intron 1 of 7) 34697 ENSMUSG00000024535.16 ENSMUSG00000024535 ENSMUST00000025417 Snx24 protein_coding Interval_96912 chr2 129427518 129427993 + 0 NA Intergenic Intergenic -48359 ENSMUSG00000081888.1 ENSMUSG00000081888 ENSMUST00000122326 Spcs2-ps unprocessed_pseudogene Interval_101725 chr3 9173956 9174548 + 0 NA Intergenic Intergenic -76350 ENSMUSG00000069114.8 ENSMUSG00000069114 ENSMUST00000155203 Zbtb10 protein_coding Interval_135507 chr6 39758459 39759507 + 0 NA Intergenic Intergenic 47059 ENSMUSG00000029918.9 ENSMUSG00000029918 ENSMUST00000139992 Mrps33 protein_coding Interval_121607 chr5 3871739 3873200 + 0 NA Intergenic Intergenic -2893 ENSMUSG00000104699.1 ENSMUSG00000104699 ENSMUST00000199852 Rps4x-ps processed_pseudogene Interval_142698 chr6 145047252 145049285 + 0 NA promoter-TSS (ENSMUSG00000030268.17) protein_coding-promoter-TSS (ENSMUSG00000030268.17) 342 ENSMUSG00000030268.17 ENSMUSG00000030268 ENSMUST00000154611 Bcat1 protein_coding Interval_159574 chr8 95540021 95541213 + 0 NA intron (ENSMUSG00000036598.4, intron 3 of 8) protein_coding-intron (ENSMUSG00000036598.4, intron 3 of 8) 6532 ENSMUSG00000036598.4 ENSMUSG00000036598 ENSMUST00000041569 Ccdc113 protein_coding Interval_138553 chr6 89276126 89276917 + 0 NA intron (ENSMUSG00000107622.1, intron 2 of 3) lincRNA-intron (ENSMUSG00000107622.1, intron 2 of 3) -3314 ENSMUSG00000107622.1 ENSMUSG00000107622 ENSMUST00000204566 4930512J16Rik lincRNA Interval_83398 chr18 84888613 84891753 + 0 NA Intergenic Intergenic -30597 ENSMUSG00000089744.2 ENSMUSG00000089744 ENSMUST00000160306 Gm16146 antisense Interval_75687 chr17 70673678 70674127 + 0 NA intron (ENSMUSG00000003279.17, intron 4 of 9) protein_coding-intron (ENSMUSG00000003279.17, intron 9 of 14) 81680 ENSMUSG00000097282.1 ENSMUSG00000097282 ENSMUST00000181546 5031415H12Rik antisense Interval_170322 chr9 106975630 106975824 + 0 NA intron (ENSMUSG00000039716.12, intron 23 of 52) protein_coding-intron (ENSMUSG00000039716.12, intron 23 of 52) -62573 ENSMUSG00000039716.12 ENSMUSG00000039716 ENSMUST00000165182 Dock3 protein_coding Interval_158553 chr8 84428542 84430129 + 0 NA intron (ENSMUSG00000034656.18, intron 3 of 48) protein_coding-intron (ENSMUSG00000034656.18, intron 1 of 46) -48754 ENSMUSG00000064392.1 ENSMUSG00000064392 ENSMUST00000082458 Gm23626 snoRNA Interval_138162 chr6 85696416 85697871 + 0 NA intron (ENSMUSG00000063810.7, intron 19 of 22) protein_coding-intron (ENSMUSG00000063810.7, intron 19 of 22) 10715 ENSMUSG00000089694.2 ENSMUSG00000089694 ENSMUST00000179613 Nat8f7 protein_coding Interval_174759 chrX 165666666 165667590 + 0 NA Intergenic Intergenic -13076 ENSMUSG00000082134.1 ENSMUSG00000082134 ENSMUST00000117309 Gm15236 processed_pseudogene Interval_117444 chr4 123717680 123718645 + 0 NA promoter-TSS (ENSMUSG00000028648.13) protein_coding-promoter-TSS (ENSMUSG00000028648.13) 19 ENSMUSG00000028648.13 ENSMUSG00000028648 ENSMUST00000137312 Ndufs5 protein_coding Interval_61449 chr15 81692960 81695129 + 0 NA promoter-TSS (ENSMUSG00000063765.12) protein_coding-promoter-TSS (ENSMUSG00000063765.12) 1491 ENSMUSG00000063765.12 ENSMUSG00000063765 ENSMUST00000230849 Chadl protein_coding Interval_46180 chr13 62255123 62255699 + 0 NA Intergenic Intergenic -17350 ENSMUSG00000113081.1 ENSMUSG00000113081 ENSMUST00000221763 Gm3333 transcribed_processed_pseudogene Interval_5272 chr1 87165188 87165594 + 0 NA Intergenic Intergenic -16475 ENSMUSG00000026247.13 ENSMUSG00000026247 ENSMUST00000159662 Ecel1 protein_coding Interval_93952 chr2 79866803 79867421 + 0 NA intron (ENSMUSG00000059173.19, intron 11 of 15) protein_coding-intron (ENSMUSG00000059173.19, intron 11 of 13) 80521 ENSMUSG00000034683.12 ENSMUSG00000034683 ENSMUST00000144432 Ppp1r1c protein_coding Interval_43301 chr13 28883848 28887512 + 0 NA promoter-TSS (ENSMUSG00000085936.7) processed_transcript-promoter-TSS (ENSMUSG00000085936.7) 12265 ENSMUSG00000113352.1 ENSMUSG00000113352 ENSMUST00000223473 Gm34639 lincRNA Interval_172584 chrX 37079527 37081167 + 0 NA Intergenic Intergenic 2695 ENSMUSG00000065642.1 ENSMUSG00000065642 ENSMUST00000083708 Snora69 snoRNA Interval_157660 chr8 72142049 72142794 + 0 NA intron (ENSMUSG00000031799.10, intron 2 of 7) protein_coding-intron (ENSMUSG00000031799.10, intron 2 of 7) -1601 ENSMUSG00000097472.1 ENSMUSG00000097472 ENSMUST00000181918 Gm26586 antisense Interval_109802 chr3 147314118 147314520 + 0 NA Intergenic Intergenic -75393 ENSMUSG00000106023.1 ENSMUSG00000106023 ENSMUST00000196485 Gm36831 lincRNA Interval_108498 chr3 127719449 127719819 + 0 NA promoter-TSS (ENSMUSG00000105701.1) TEC-promoter-TSS (ENSMUSG00000105701.1) -448 ENSMUSG00000105701.1 ENSMUSG00000105701 ENSMUST00000198462 Gm42587 TEC Interval_122029 chr5 14295628 14296885 + 0 NA Intergenic Intergenic 53794 ENSMUSG00000106310.1 ENSMUSG00000106310 ENSMUST00000197397 Gm43523 TEC Interval_94245 chr2 86320905 86321146 + 0 NA Intergenic Intergenic -5741 ENSMUSG00000075192.4 ENSMUSG00000075192 ENSMUST00000099897 Olfr1053 protein_coding Interval_3152 chr1 54052097 54053256 + 0 NA intron (ENSMUSG00000042807.15, intron 1 of 3) protein_coding-intron (ENSMUSG00000042807.15, intron 1 of 28) 102420 ENSMUSG00000102868.1 ENSMUSG00000102868 ENSMUST00000192858 Gm37633 TEC Interval_119099 chr4 135548015 135548933 + 0 NA exon (ENSMUSG00000037188.7, exon 14 of 16) protein_coding-exon (ENSMUSG00000037188.7, exon 14 of 16) 25156 ENSMUSG00000037188.7 ENSMUSG00000037188 ENSMUST00000105855 Grhl3 protein_coding Interval_110762 chr4 8122947 8124573 + 0 NA Intergenic Intergenic 5140 ENSMUSG00000083068.1 ENSMUSG00000083068 ENSMUST00000120050 Gm11800 processed_pseudogene Interval_159665 chr8 96339232 96339746 + 0 NA intron (ENSMUSG00000110623.1, intron 1 of 4) lincRNA-intron (ENSMUSG00000110623.1, intron 1 of 4) -20871 ENSMUSG00000077272.1 ENSMUSG00000077272 ENSMUST00000104084 Gm22780 snoRNA Interval_104139 chr3 58987118 58987529 + 0 NA exon (ENSMUSG00000059776.7, exon 1 of 1) processed_pseudogene-exon (ENSMUSG00000059776.7, exon 1 of 1) 153 ENSMUSG00000059776.7 ENSMUSG00000059776 ENSMUST00000079761 Rpl13-ps6 processed_pseudogene Interval_35424 chr12 21525518 21525917 + 0 NA Intergenic Intergenic -17590 ENSMUSG00000109975.1 ENSMUSG00000109975 ENSMUST00000209258 Gm19196 transcribed_unprocessed_pseudogene Interval_25169 chr11 44707429 44709958 + 0 NA intron (ENSMUSG00000057098.14, intron 6 of 15) protein_coding-intron (ENSMUSG00000057098.14, intron 6 of 15) -46017 ENSMUSG00000085784.1 ENSMUSG00000085784 ENSMUST00000130493 Gm12158 antisense Interval_156635 chr8 56134480 56134833 + 0 NA Intergenic Intergenic -117556 ENSMUSG00000109662.1 ENSMUSG00000109662 ENSMUST00000209828 Gm45366 processed_pseudogene Interval_6939 chr1 121087007 121087818 + 0 NA promoter-TSS (ENSMUSG00000097881.7) lincRNA-promoter-TSS (ENSMUSG00000097881.7) -59 ENSMUSG00000097881.7 ENSMUSG00000097881 ENSMUST00000181183 Celrr lincRNA Interval_21362 chr10 128166781 128167573 + 0 NA intron (ENSMUSG00000040043.17, intron 2 of 14) protein_coding-intron (ENSMUSG00000040043.17, intron 1 of 12) 13120 ENSMUSG00000040043.17 ENSMUSG00000040043 ENSMUST00000218884 Rbms2 protein_coding Interval_73861 chr17 44776675 44777882 + 0 NA promoter-TSS (ENSMUSG00000038954.14) protein_coding-promoter-TSS (ENSMUSG00000038954.14) -47 ENSMUSG00000038954.14 ENSMUSG00000038954 ENSMUST00000129416 Supt3 protein_coding Interval_125685 chr5 73231613 73232640 + 0 NA intron (ENSMUSG00000070733.13, intron 1 of 11) protein_coding-intron (ENSMUSG00000070733.13, intron 1 of 62) -19483 ENSMUSG00000090561.2 ENSMUSG00000090561 ENSMUST00000168686 Gm17207 sense_intronic Interval_50079 chr14 7847741 7848423 + 0 NA intron (ENSMUSG00000025278.9, intron 1 of 45) protein_coding-intron (ENSMUSG00000025278.9, intron 1 of 45) -36659 ENSMUSG00000025278.9 ENSMUSG00000025278 ENSMUST00000228206 Flnb protein_coding Interval_87992 chr19 57633514 57633763 + 0 NA intron (ENSMUSG00000054843.9, intron 3 of 28) protein_coding-intron (ENSMUSG00000054843.9, intron 3 of 28) 22604 ENSMUSG00000054843.9 ENSMUSG00000054843 ENSMUST00000077282 Atrnl1 protein_coding Interval_58270 chr15 31535628 31536819 + 0 NA Intergenic Intergenic -5170 ENSMUSG00000039100.10 ENSMUSG00000039100 ENSMUST00000228122 Marchf6 protein_coding Interval_109285 chr3 138643997 138645500 + 0 NA promoter-TSS (ENSMUSG00000105126.1) processed_pseudogene-promoter-TSS (ENSMUSG00000105126.1) -804 ENSMUSG00000105126.1 ENSMUSG00000105126 ENSMUST00000196886 Gm43723 processed_pseudogene Interval_33562 chr11 117224795 117225953 + 0 NA intron (ENSMUSG00000059248.13, intron 2 of 11) protein_coding-intron (ENSMUSG00000059248.13, intron 2 of 11) 38063 ENSMUSG00000086050.1 ENSMUSG00000086050 ENSMUST00000123882 Gm16045 antisense Interval_99764 chr2 164773460 164774220 + 0 NA TTS (ENSMUSG00000001403.13) protein_coding-TTS (ENSMUSG00000001403.13) 3942 ENSMUSG00000001403.13 ENSMUSG00000001403 ENSMUST00000001439 Ube2c protein_coding Interval_2697 chr1 43511257 43512233 + 0 NA intron (ENSMUSG00000066877.11, intron 2 of 2) protein_coding-intron (ENSMUSG00000066877.11, intron 2 of 4) -20660 ENSMUSG00000066877.11 ENSMUSG00000066877 ENSMUST00000114744 Nck2 protein_coding Interval_67217 chr16 44502181 44502462 + 0 NA intron (ENSMUSG00000022687.12, intron 4 of 18) protein_coding-intron (ENSMUSG00000022687.12, intron 4 of 18) 55808 ENSMUSG00000093046.1 ENSMUSG00000093046 ENSMUST00000175305 Mir3081 miRNA Interval_161310 chr8 119668846 119671326 + 0 NA intron (ENSMUSG00000023336.6, intron 1 of 4) protein_coding-intron (ENSMUSG00000023336.6, intron 1 of 6) 795 ENSMUSG00000110453.1 ENSMUSG00000110453 ENSMUST00000212465 Gm32352 antisense Interval_1110 chr1 15794584 15794811 + 0 NA Intergenic Intergenic -12944 ENSMUSG00000025925.14 ENSMUSG00000025925 ENSMUST00000188684 Terf1 protein_coding Interval_36992 chr12 56038996 56039669 + 0 NA Intergenic Intergenic -11201 ENSMUSG00000112315.1 ENSMUSG00000112315 ENSMUST00000219409 Gm5183 processed_pseudogene Interval_59248 chr15 49755395 49755615 + 0 NA Intergenic Intergenic -157877 ENSMUSG00000115446.1 ENSMUSG00000115446 ENSMUST00000227486 Gm49186 processed_pseudogene Interval_73650 chr17 42401468 42401702 + 0 NA intron (ENSMUSG00000042256.5, intron 2 of 2) protein_coding-intron (ENSMUSG00000042256.5, intron 3 of 3) 85596 ENSMUSG00000042256.5 ENSMUSG00000042256 ENSMUST00000232968 Ptchd4 protein_coding Interval_70346 chr17 8728442 8729107 + 0 NA intron (ENSMUSG00000023868.17, intron 1 of 3) protein_coding-intron (ENSMUSG00000023868.17, intron 1 of 21) -28244 ENSMUSG00000023868.17 ENSMUSG00000023868 ENSMUST00000115708 Pde10a protein_coding Interval_128082 chr5 110779718 110780976 + 0 NA promoter-TSS (ENSMUSG00000029507.16) protein_coding-promoter-TSS (ENSMUSG00000029507.16) 268 ENSMUSG00000029507.16 ENSMUSG00000029507 ENSMUST00000149208 Pus1 protein_coding Interval_13840 chr10 23726126 23726959 + 0 NA Intergenic Intergenic 58933 ENSMUSG00000070063.1 ENSMUSG00000070063 ENSMUST00000093556 Snora33 snoRNA Interval_119874 chr4 140628388 140628925 + 0 NA intron (ENSMUSG00000040964.16, intron 1 of 27) protein_coding-intron (ENSMUSG00000040964.16, intron 1 of 27) -11591 ENSMUSG00000040964.16 ENSMUSG00000040964 ENSMUST00000154979 Arhgef10l protein_coding Interval_51052 chr14 21817683 21817865 + 0 NA Intergenic Intergenic 5063 ENSMUSG00000065836.1 ENSMUSG00000065836 ENSMUST00000083902 Gm23502 snRNA Interval_2372 chr1 38668107 38668428 + 0 NA Intergenic Intergenic -41066 ENSMUSG00000037138.18 ENSMUSG00000037138 ENSMUST00000134963 Aff3 protein_coding Interval_36070 chr12 35021979 35022273 + 0 NA Intergenic Intergenic -21569 ENSMUSG00000089043.1 ENSMUSG00000089043 ENSMUST00000158418 Gm24359 misc_RNA Interval_104650 chr3 69120838 69121034 + 0 NA exon (ENSMUSG00000103094.1, exon 1 of 1) TEC-exon (ENSMUSG00000103094.1, exon 1 of 1) 1788 ENSMUSG00000103094.1 ENSMUSG00000103094 ENSMUST00000193684 Gm37558 TEC Interval_3725 chr1 62337618 62337891 + 0 NA intron (ENSMUSG00000052062.14, intron 16 of 21) protein_coding-intron (ENSMUSG00000052062.14, intron 15 of 21) 90601 ENSMUSG00000102359.1 ENSMUSG00000102359 ENSMUST00000195466 Gm38351 TEC Interval_86298 chr19 38480380 38481685 + 0 NA promoter-TSS (ENSMUSG00000024998.17) protein_coding-promoter-TSS (ENSMUSG00000024998.17) -7830 ENSMUSG00000088940.1 ENSMUSG00000088940 ENSMUST00000158315 Gm24930 misc_RNA Interval_143150 chr7 3684360 3686185 + 0 NA promoter-TSS (ENSMUSG00000035596.14) protein_coding-promoter-TSS (ENSMUSG00000035596.14) -7591 ENSMUSG00000035585.16 ENSMUSG00000035585 ENSMUST00000147288 Tsen34 protein_coding Interval_148947 chr7 90252730 90253596 + 0 NA intron (ENSMUSG00000030617.13, intron 2 of 10) protein_coding-intron (ENSMUSG00000030617.13, intron 2 of 7) 12614 ENSMUSG00000030617.13 ENSMUSG00000030617 ENSMUST00000207819 Ccdc83 protein_coding Interval_34976 chr12 16135536 16136701 + 0 NA Intergenic Intergenic -18983 ENSMUSG00000113142.1 ENSMUSG00000113142 ENSMUST00000221780 Gm18114 processed_pseudogene Interval_38863 chr12 83496151 83496734 + 0 NA Intergenic Intergenic -8640 ENSMUSG00000113664.1 ENSMUSG00000113664 ENSMUST00000221402 Gm47184 processed_pseudogene Interval_64098 chr16 8200041 8200227 + 0 NA Intergenic Intergenic -3841 ENSMUSG00000089506.1 ENSMUSG00000089506 ENSMUST00000158881 Gm23476 misc_RNA Interval_171183 chr9 115029106 115031062 + 0 NA intron (ENSMUSG00000040875.12, intron 1 of 11) protein_coding-intron (ENSMUSG00000040875.12, intron 1 of 11) 31468 ENSMUSG00000040875.12 ENSMUSG00000040875 ENSMUST00000182413 Osbpl10 protein_coding Interval_3282 chr1 55497441 55498733 + 0 NA intron (ENSMUSG00000038349.10, intron 1 of 5) protein_coding-intron (ENSMUSG00000038349.10, intron 1 of 5) -53063 ENSMUSG00000100309.1 ENSMUSG00000100309 ENSMUST00000186507 Gm6644 processed_pseudogene Interval_11707 chr1 184810644 184811597 + 0 NA promoter-TSS (ENSMUSG00000026621.13) protein_coding-promoter-TSS (ENSMUSG00000026621.13) -2267 ENSMUSG00000026621.13 ENSMUSG00000026621 ENSMUST00000189492 Mtarc1 protein_coding Interval_54300 chr14 67331247 67331630 + 0 NA TTS (ENSMUSG00000093472.1) antisense-TTS (ENSMUSG00000093472.1) 4490 ENSMUSG00000093386.1 ENSMUSG00000093386 ENSMUST00000177127 1700120O09Rik processed_transcript Interval_90815 chr2 32768575 32769161 + 0 NA exon (ENSMUSG00000039021.15, exon 10 of 15) protein_coding-exon (ENSMUSG00000039021.15, exon 10 of 15) 6763 ENSMUSG00000039021.15 ENSMUSG00000039021 ENSMUST00000161958 Ttc16 protein_coding Interval_137733 chr6 81923370 81924552 + 0 NA intron (ENSMUSG00000035125.10, intron 1 of 17) protein_coding-intron (ENSMUSG00000035125.10, intron 1 of 16) -6754 ENSMUSG00000035125.10 ENSMUSG00000035125 ENSMUST00000129678 Gcfc2 protein_coding Interval_112154 chr4 34981458 34981950 + 0 NA intron (ENSMUSG00000073910.10, intron 3 of 3) protein_coding-intron (ENSMUSG00000073910.10, intron 3 of 3) 19484 ENSMUSG00000086792.1 ENSMUSG00000086792 ENSMUST00000144419 Gm12364 antisense Interval_96342 chr2 121791432 121791661 + 0 NA intron (ENSMUSG00000027238.17, intron 1 of 7) protein_coding-intron (ENSMUSG00000027238.17, intron 1 of 13) 73016 ENSMUSG00000084244.1 ENSMUSG00000084244 ENSMUST00000118165 Gm14020 processed_pseudogene Interval_96295 chr2 121357569 121358956 + 0 NA promoter-TSS (ENSMUSG00000000308.14) protein_coding-promoter-TSS (ENSMUSG00000000308.14) -4656 ENSMUSG00000000308.14 ENSMUSG00000000308 ENSMUST00000153040 Ckmt1 protein_coding Interval_77440 chr17 88778788 88779319 + 0 NA intron (ENSMUSG00000024107.7, intron 1 of 10) protein_coding-intron (ENSMUSG00000024107.7, intron 1 of 10) -4997 ENSMUSG00000024107.7 ENSMUSG00000024107 ENSMUST00000234269 Lhcgr protein_coding Interval_38572 chr12 80190940 80192263 + 0 NA promoter-TSS (ENSMUSG00000112830.1) processed_transcript-promoter-TSS (ENSMUSG00000112830.1) -173 ENSMUSG00000112830.1 ENSMUSG00000112830 ENSMUST00000220316 Gm47765 processed_transcript Interval_3159 chr1 54194120 54195379 + 0 NA promoter-TSS (ENSMUSG00000042807.15) protein_coding-promoter-TSS (ENSMUSG00000042807.15) -39653 ENSMUSG00000102868.1 ENSMUSG00000102868 ENSMUST00000192858 Gm37633 TEC Interval_2387 chr1 38883802 38884059 + 0 NA promoter-TSS (ENSMUSG00000103647.1) antisense-promoter-TSS (ENSMUSG00000103647.1) -824 ENSMUSG00000103647.1 ENSMUSG00000103647 ENSMUST00000195309 Gm37707 antisense Interval_108597 chr3 129448609 129449022 + 0 NA Intergenic Intergenic -13157 ENSMUSG00000106258.1 ENSMUSG00000106258 ENSMUST00000198361 Rpl7a-ps7 processed_pseudogene Interval_14819 chr10 40283083 40285892 + 0 NA Intergenic Intergenic -2434 ENSMUSG00000111213.1 ENSMUSG00000111213 ENSMUST00000213723 Gm47867 processed_pseudogene Interval_145212 chr7 30672759 30673219 + 0 NA Intergenic Intergenic -1389 ENSMUSG00000049761.6 ENSMUSG00000049761 ENSMUST00000186845 Pmis2 protein_coding Interval_81361 chr18 59158733 59159037 + 0 NA Intergenic Intergenic -16568 ENSMUSG00000058152.8 ENSMUSG00000058152 ENSMUST00000080721 Chsy3 protein_coding Interval_161416 chr8 120336949 120337532 + 0 NA intron (ENSMUSG00000031822.20, intron 1 of 2) protein_coding-intron (ENSMUSG00000092329.1, intron 1 of 15) 106309 ENSMUSG00000080549.2 ENSMUSG00000080549 ENSMUST00000116899 Gm22715 miRNA Interval_12794 chr10 5501852 5502124 + 0 NA intron (ENSMUSG00000096054.3, intron 2 of 145) protein_coding-intron (ENSMUSG00000096054.3, intron 2 of 31) -91787 ENSMUSG00000046916.9 ENSMUSG00000046916 ENSMUST00000051809 Myct1 protein_coding Interval_163761 chr9 25400644 25401437 + 0 NA Intergenic Intergenic -49422 ENSMUSG00000111600.1 ENSMUSG00000111600 ENSMUST00000214336 Gm8049 processed_pseudogene Interval_92201 chr2 56082739 56083998 + 0 NA Intergenic Intergenic 43515 ENSMUSG00000082142.1 ENSMUSG00000082142 ENSMUST00000120018 Gm13518 processed_pseudogene Interval_101097 chr2 177938322 177938592 + 0 NA intron (ENSMUSG00000078862.10, intron 4 of 4) protein_coding-intron (ENSMUSG00000078862.10, intron 4 of 4) 15227 ENSMUSG00000078862.10 ENSMUSG00000078862 ENSMUST00000108928 Gm14326 protein_coding Interval_57425 chr15 10702260 10702496 + 0 NA intron (ENSMUSG00000022246.14, intron 1 of 1) protein_coding-intron (ENSMUSG00000022246.14, intron 1 of 17) 11720 ENSMUSG00000022246.14 ENSMUSG00000022246 ENSMUST00000227366 Rai14 protein_coding Interval_40527 chr12 105513805 105514530 + 0 NA exon (ENSMUSG00000113535.1, exon 1 of 2) lincRNA-exon (ENSMUSG00000113535.1, exon 1 of 2) 687 ENSMUSG00000113535.1 ENSMUSG00000113535 ENSMUST00000223443 AU015791 lincRNA Interval_12145 chr1 190092591 190092934 + 0 NA Intergenic Intergenic -75908 ENSMUSG00000099404.1 ENSMUSG00000099404 ENSMUST00000189880 Gm28172 antisense Interval_131977 chr5 141724777 141725075 + 0 NA intron (ENSMUSG00000039683.16, intron 4 of 9) protein_coding-intron (ENSMUSG00000039683.16, intron 4 of 44) -108924 ENSMUSG00000085540.1 ENSMUSG00000085540 ENSMUST00000150385 Gm16036 antisense Interval_153668 chr8 4399959 4400196 + 0 NA exon (ENSMUSG00000109397.1, exon 1 of 1) TEC-exon (ENSMUSG00000109397.1, exon 1 of 1) 839 ENSMUSG00000109397.1 ENSMUSG00000109397 ENSMUST00000207250 Gm45117 TEC Interval_146732 chr7 49785080 49785356 + 0 NA exon (ENSMUSG00000030505.17, exon 1 of 2) protein_coding-exon (ENSMUSG00000030505.17, exon 1 of 2) 1017 ENSMUSG00000030505.17 ENSMUSG00000030505 ENSMUST00000130907 Prmt3 protein_coding Interval_111499 chr4 22214422 22214819 + 0 NA Intergenic Intergenic -61213 ENSMUSG00000083376.1 ENSMUSG00000083376 ENSMUST00000121463 Gm11882 processed_pseudogene Interval_161812 chr8 122956217 122957035 + 0 NA intron (ENSMUSG00000035569.17, intron 2 of 2) protein_coding-intron (ENSMUSG00000035569.17, intron 2 of 12) 26317 ENSMUSG00000065915.1 ENSMUSG00000065915 ENSMUST00000083981 Gm24445 snRNA Interval_6556 chr1 116366800 116367525 + 0 NA intron (ENSMUSG00000070695.4, intron 13 of 23) protein_coding-intron (ENSMUSG00000070695.4, intron 13 of 23) 27251 ENSMUSG00000092948.1 ENSMUSG00000092948 ENSMUST00000175207 Gm23393 miRNA Interval_154561 chr8 19516939 19517130 + 0 NA Intergenic Intergenic -2637 ENSMUSG00000082650.1 ENSMUSG00000082650 ENSMUST00000119249 Gm15358 processed_pseudogene Interval_51126 chr14 23876970 23877572 + 0 NA intron (ENSMUSG00000063142.15, intron 1 of 16) protein_coding-intron (ENSMUSG00000063142.15, intron 1 of 29) -127720 ENSMUSG00000114953.1 ENSMUSG00000114953 ENSMUST00000223837 4930519K11Rik bidirectional_promoter_lncRNA Interval_69443 chr16 93476621 93477846 + 0 NA intron (ENSMUSG00000116595.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000116595.1, intron 1 of 1) 9841 ENSMUSG00000116595.1 ENSMUSG00000116595 ENSMUST00000231757 Gm30695 lincRNA Interval_153990 chr8 11665415 11666818 + 0 NA intron (ENSMUSG00000031509.10, intron 1 of 4) protein_coding-intron (ENSMUSG00000031509.10, intron 1 of 5) -3512 ENSMUSG00000031509.10 ENSMUSG00000031509 ENSMUST00000191350 1700016D06Rik protein_coding Interval_129779 chr5 122293951 122295710 + 0 NA promoter-TSS (ENSMUSG00000038582.15) protein_coding-promoter-TSS (ENSMUSG00000038582.15) -942 ENSMUSG00000038582.15 ENSMUSG00000038582 ENSMUST00000119015 Pptc7 protein_coding Interval_93799 chr2 76989515 76989798 + 0 NA Intergenic Intergenic 33040 ENSMUSG00000044033.16 ENSMUSG00000044033 ENSMUST00000111833 Ccdc141 protein_coding Interval_84134 chr19 7421933 7423921 + 0 NA TTS (ENSMUSG00000053080.10) protein_coding-TTS (ENSMUSG00000053080.10) 354 ENSMUSG00000098293.1 ENSMUSG00000098293 ENSMUST00000183837 Mir6991 miRNA Interval_1344 chr1 20805053 20805270 + 0 NA promoter-TSS (ENSMUSG00000041859.10) protein_coding-promoter-TSS (ENSMUSG00000041859.10) -228 ENSMUSG00000041859.10 ENSMUSG00000041859 ENSMUST00000190421 Mcm3 protein_coding Interval_122555 chr5 23783037 23783806 + 0 NA intron (ENSMUSG00000057541.14, intron 1 of 16) protein_coding-intron (ENSMUSG00000057541.14, intron 1 of 15) -4300 ENSMUSG00000028999.15 ENSMUSG00000028999 ENSMUST00000144709 Rint1 protein_coding Interval_27000 chr11 62305878 62306284 + 0 NA promoter-TSS (ENSMUSG00000081340.1) processed_pseudogene-promoter-TSS (ENSMUSG00000081340.1) -911 ENSMUSG00000081340.1 ENSMUSG00000081340 ENSMUST00000119805 Gm12275 processed_pseudogene Interval_164664 chr9 40416379 40416594 + 0 NA intron (ENSMUSG00000040111.17, intron 1 of 20) protein_coding-intron (ENSMUSG00000040111.17, intron 1 of 19) -49584 ENSMUSG00000110928.1 ENSMUSG00000110928 ENSMUST00000214407 Gm48114 TEC Interval_144849 chr7 28591365 28592841 + 0 NA intron (ENSMUSG00000030602.13, intron 1 of 3) protein_coding-intron (ENSMUSG00000109336.1, intron 1 of 12) 5983 ENSMUSG00000030602.13 ENSMUSG00000030602 ENSMUST00000150454 Pak4 protein_coding Interval_71049 chr17 17424635 17425913 + 0 NA intron (ENSMUSG00000047786.12, intron 1 of 5) protein_coding-intron (ENSMUSG00000047786.12, intron 1 of 5) -13281 ENSMUSG00000097379.2 ENSMUSG00000097379 ENSMUST00000181390 Gm26873 antisense Interval_55870 chr14 101670333 101670932 + 0 NA intron (ENSMUSG00000022111.9, intron 2 of 4) protein_coding-intron (ENSMUSG00000022111.9, intron 6 of 8) 16607 ENSMUSG00000022111.9 ENSMUSG00000022111 ENSMUST00000226340 Uchl3 protein_coding Interval_141845 chr6 134881224 134881448 + 0 NA intron (ENSMUSG00000032641.18, intron 3 of 3) protein_coding-intron (ENSMUSG00000032641.18, intron 3 of 3) 6449 ENSMUSG00000032641.18 ENSMUSG00000032641 ENSMUST00000152140 Gpr19 protein_coding Interval_27843 chr11 70363467 70363704 + 0 NA Intergenic Intergenic 5447 ENSMUSG00000082145.1 ENSMUSG00000082145 ENSMUST00000120351 Gm12312 processed_pseudogene Interval_132723 chr5 147402653 147402888 + 0 NA TTS (ENSMUSG00000097228.1) antisense-TTS (ENSMUSG00000097228.1) -2281 ENSMUSG00000042817.15 ENSMUSG00000042817 ENSMUST00000110549 Flt3 protein_coding Interval_172287 chrX 12347026 12347239 + 0 NA intron (ENSMUSG00000087591.7, intron 1 of 3) lincRNA-intron (ENSMUSG00000087591.7, intron 1 of 3) 7864 ENSMUSG00000087591.7 ENSMUSG00000087591 ENSMUST00000137281 Gm14635 lincRNA Interval_162074 chr8 124896819 124898605 + 0 NA promoter-TSS (ENSMUSG00000031986.6) protein_coding-promoter-TSS (ENSMUSG00000031986.6) -7 ENSMUSG00000074030.3 ENSMUSG00000074030 ENSMUST00000098312 Exoc8 protein_coding Interval_24364 chr11 32681287 32681887 + 0 NA intron (ENSMUSG00000020271.17, intron 3 of 4) protein_coding-intron (ENSMUSG00000020271.17, intron 2 of 13) 38683 ENSMUSG00000020271.17 ENSMUSG00000020271 ENSMUST00000143290 Fbxw11 protein_coding Interval_169251 chr9 95827457 95827715 + 0 NA intron (ENSMUSG00000049493.13, intron 1 of 15) protein_coding-intron (ENSMUSG00000049493.13, intron 1 of 15) 17725 ENSMUSG00000049493.13 ENSMUSG00000049493 ENSMUST00000135816 Pls1 protein_coding Interval_29655 chr11 85843162 85844905 + 0 NA Intergenic Intergenic 6300 ENSMUSG00000069785.4 ENSMUSG00000069785 ENSMUST00000146433 Gm11444 protein_coding Interval_125680 chr5 73208742 73211130 + 0 NA TTS (ENSMUSG00000090561.2) sense_intronic-TTS (ENSMUSG00000090561.2) 2707 ENSMUSG00000090561.2 ENSMUSG00000090561 ENSMUST00000168686 Gm17207 sense_intronic Interval_106224 chr3 94768887 94769185 + 0 NA intron (ENSMUSG00000068876.16, intron 13 of 20) protein_coding-intron (ENSMUSG00000068876.16, intron 13 of 20) -10920 ENSMUSG00000081355.1 ENSMUSG00000081355 ENSMUST00000118050 Gm15264 unprocessed_pseudogene Interval_66149 chr16 31952239 31952676 + 0 NA intron (ENSMUSG00000022774.13, intron 1 of 3) protein_coding-intron (ENSMUSG00000022774.13, intron 1 of 3) 3856 ENSMUSG00000022774.13 ENSMUSG00000022774 ENSMUST00000115178 Ncbp2 protein_coding Interval_98370 chr2 151902805 151903022 + 0 NA Intergenic Intergenic -8297 ENSMUSG00000027460.7 ENSMUSG00000027460 ENSMUST00000028955 Angpt4 protein_coding Interval_145150 chr7 30306292 30306698 + 0 NA intron (ENSMUSG00000013921.15, intron 2 of 2) protein_coding-intron (ENSMUSG00000013921.15, intron 13 of 13) -4632 ENSMUSG00000042831.13 ENSMUSG00000042831 ENSMUST00000135882 Alkbh6 protein_coding Interval_86823 chr19 44121433 44121988 + 0 NA TTS (ENSMUSG00000025200.7) protein_coding-TTS (ENSMUSG00000025200.7) -7586 ENSMUSG00000077391.1 ENSMUSG00000077391 ENSMUST00000104203 Gm24336 snoRNA Interval_135057 chr6 35017157 35018484 + 0 NA Intergenic Intergenic -29416 ENSMUSG00000029847.13 ENSMUSG00000029847 ENSMUST00000144079 Slc23a4 protein_coding Interval_93161 chr2 70744761 70744981 + 0 NA intron (ENSMUSG00000041997.16, intron 11 of 21) protein_coding-intron (ENSMUSG00000041997.16, intron 10 of 19) -26967 ENSMUSG00000041997.16 ENSMUSG00000041997 ENSMUST00000124629 Tlk1 protein_coding Interval_90890 chr2 33233244 33234381 + 0 NA intron (ENSMUSG00000004105.8, intron 2 of 2) protein_coding-intron (ENSMUSG00000004105.8, intron 2 of 4) 17695 ENSMUSG00000004105.8 ENSMUSG00000004105 ENSMUST00000193373 Angptl2 protein_coding Interval_172445 chrX 20412150 20412858 + 0 NA Intergenic Intergenic -13213 ENSMUSG00000037315.15 ENSMUSG00000037315 ENSMUST00000043693 Jade3 protein_coding Interval_96421 chr2 122361474 122362415 + 0 NA intron (ENSMUSG00000033256.14, intron 1 of 5) protein_coding-intron (ENSMUSG00000033256.14, intron 1 of 5) 7193 ENSMUSG00000033256.14 ENSMUSG00000033256 ENSMUST00000135848 Shf protein_coding Interval_89282 chr2 18799365 18801891 + 0 NA exon (ENSMUSG00000097638.1, exon 1 of 1) protein_coding-exon (ENSMUSG00000097638.1, exon 1 of 1) 1190 ENSMUSG00000097638.1 ENSMUSG00000097638 ENSMUST00000181515 Carlr protein_coding Interval_116256 chr4 109072281 109074300 + 0 NA intron (ENSMUSG00000028559.17, intron 5 of 8) protein_coding-intron (ENSMUSG00000028559.17, intron 12 of 23) 49084 ENSMUSG00000053510.12 ENSMUSG00000053510 ENSMUST00000125063 Nrd1 protein_coding Interval_42650 chr13 17714698 17714916 + 0 NA exon (ENSMUSG00000041297.8, exon 14 of 14) protein_coding-exon (ENSMUSG00000041297.8, exon 14 of 14) -4943 ENSMUSG00000113045.1 ENSMUSG00000113045 ENSMUST00000220764 Gm48621 TEC Interval_107731 chr3 112150613 112152210 + 0 NA Intergenic Intergenic 47630 ENSMUSG00000089017.1 ENSMUSG00000089017 ENSMUST00000158392 Gm25519 snoRNA Interval_16123 chr10 60855013 60855222 + 0 NA Intergenic Intergenic -23735 ENSMUSG00000020099.8 ENSMUSG00000020099 ENSMUST00000218637 Unc5b protein_coding Interval_1813 chr1 33963970 33965082 + 0 NA promoter-TSS (ENSMUSG00000099382.1) processed_pseudogene-promoter-TSS (ENSMUSG00000099382.1) -841 ENSMUSG00000099382.1 ENSMUSG00000099382 ENSMUST00000190740 Gm28631 processed_pseudogene Interval_99724 chr2 164513660 164513911 + 0 NA Intergenic Intergenic 16224 ENSMUSG00000017721.15 ENSMUSG00000017721 ENSMUST00000131976 Pigt protein_coding Interval_135156 chr6 37042221 37042855 + 0 NA intron (ENSMUSG00000038665.15, intron 12 of 32) protein_coding-intron (ENSMUSG00000038665.15, intron 12 of 32) 85688 ENSMUSG00000107310.1 ENSMUSG00000107310 ENSMUST00000202891 Gm7452 transcribed_processed_pseudogene Interval_141532 chr6 128920512 128920695 + 0 NA TTS (ENSMUSG00000107992.1) unprocessed_pseudogene-TTS (ENSMUSG00000107992.1) 736 ENSMUSG00000107992.1 ENSMUSG00000107992 ENSMUST00000204854 Gm44223 unprocessed_pseudogene Interval_45923 chr13 59335912 59336239 + 0 NA Intergenic Intergenic -5832 ENSMUSG00000114240.1 ENSMUSG00000114240 ENSMUST00000224237 Gm47360 lincRNA Interval_82366 chr18 73121706 73123108 + 0 NA Intergenic Intergenic -201317 ENSMUSG00000118316.1 ENSMUSG00000118316 ENSMUST00000236243 Gm31908 lincRNA Interval_102389 chr3 23274505 23274808 + 0 NA Intergenic Intergenic 100661 ENSMUSG00000102214.1 ENSMUSG00000102214 ENSMUST00000191948 Gm37492 processed_pseudogene Interval_172965 chrX 58013430 58014721 + 0 NA Intergenic Intergenic -8625 ENSMUSG00000067860.11 ENSMUSG00000067860 ENSMUST00000088629 Zic3 protein_coding Interval_76288 chr17 78751365 78752896 + 0 NA promoter-TSS (ENSMUSG00000117192.1) processed_pseudogene-promoter-TSS (ENSMUSG00000117192.1) -125 ENSMUSG00000117192.1 ENSMUSG00000117192 ENSMUST00000233688 Gm18649 processed_pseudogene Interval_114015 chr4 62479535 62481042 + 0 NA exon (ENSMUSG00000028392.15, exon 1 of 7) protein_coding-exon (ENSMUSG00000028392.15, exon 1 of 7) 199 ENSMUSG00000028392.15 ENSMUSG00000028392 ENSMUST00000132237 Bspry protein_coding Interval_155870 chr8 40497487 40498597 + 0 NA intron (ENSMUSG00000031601.16, intron 4 of 5) protein_coding-intron (ENSMUSG00000031601.16, intron 5 of 6) 13262 ENSMUSG00000031601.16 ENSMUSG00000031601 ENSMUST00000139558 Cnot7 protein_coding Interval_22337 chr11 8942435 8942779 + 0 NA intron (ENSMUSG00000046634.12, intron 3 of 42) protein_coding-intron (ENSMUSG00000046634.12, intron 10 of 49) 7932 ENSMUSG00000046634.12 ENSMUSG00000046634 ENSMUST00000155886 Pkd1l1 protein_coding Interval_142993 chr6 148135837 148136606 + 0 NA intron (ENSMUSG00000030303.15, intron 1 of 12) protein_coding-intron (ENSMUSG00000030303.15, intron 1 of 11) 46987 ENSMUSG00000030304.11 ENSMUSG00000030304 ENSMUST00000132413 Ergic2 protein_coding Interval_128320 chr5 112523332 112524212 + 0 NA intron (ENSMUSG00000058153.15, intron 1 of 14) protein_coding-intron (ENSMUSG00000058153.15, intron 1 of 16) 53096 ENSMUSG00000058153.15 ENSMUSG00000058153 ENSMUST00000212758 Sez6l protein_coding Interval_147868 chr7 74553890 74555845 + 0 NA promoter-TSS (ENSMUSG00000025790.14) protein_coding-promoter-TSS (ENSMUSG00000025790.14) -144989 ENSMUSG00000108570.1 ENSMUSG00000108570 ENSMUST00000206241 Gm7726 processed_pseudogene Interval_60160 chr15 66719326 66720077 + 0 NA exon (ENSMUSG00000053469.14, exon 25 of 48) protein_coding-exon (ENSMUSG00000053469.14, exon 25 of 48) -16549 ENSMUSG00000053469.14 ENSMUSG00000053469 ENSMUST00000166403 Tg protein_coding Interval_92538 chr2 60423306 60423798 + 0 NA intron (ENSMUSG00000054580.14, intron 1 of 2) protein_coding-intron (ENSMUSG00000054580.14, intron 27 of 29) 12027 ENSMUSG00000087283.1 ENSMUSG00000087283 ENSMUST00000131457 Gm13580 antisense Interval_114842 chr4 86183371 86184903 + 0 NA intron (ENSMUSG00000066113.16, intron 4 of 8) protein_coding-intron (ENSMUSG00000066113.16, intron 4 of 12) -140643 ENSMUSG00000064687.1 ENSMUSG00000064687 ENSMUST00000082753 Gm25811 snRNA Interval_163670 chr9 23674908 23675398 + 0 NA Intergenic Intergenic -101339 ENSMUSG00000111041.1 ENSMUSG00000111041 ENSMUST00000215669 Gm3011 processed_pseudogene Interval_166778 chr9 62569136 62569361 + 0 NA Intergenic Intergenic 54219 ENSMUSG00000084540.1 ENSMUSG00000084540 ENSMUST00000122591 n-R5s84 rRNA Interval_77698 chr17 94418574 94418927 + 0 NA Intergenic Intergenic -89887 ENSMUSG00000077433.1 ENSMUSG00000077433 ENSMUST00000104245 Gm22593 snRNA Interval_68624 chr16 81747453 81748017 + 0 NA Intergenic Intergenic -44481 ENSMUSG00000116803.1 ENSMUSG00000116803 ENSMUST00000231467 Gm49558 processed_pseudogene Interval_74121 chr17 46628653 46630454 + 0 NA promoter-TSS (ENSMUSG00000023972.10) protein_coding-promoter-TSS (ENSMUSG00000023972.10) 16469 ENSMUSG00000003546.10 ENSMUSG00000003546 ENSMUST00000003642 Klc4 protein_coding Interval_69803 chr16 96689592 96690048 + 0 NA intron (ENSMUSG00000050272.10, intron 16 of 32) protein_coding-intron (ENSMUSG00000050272.10, intron 16 of 32) -33692 ENSMUSG00000117000.1 ENSMUSG00000117000 ENSMUST00000233368 Gm32509 processed_transcript Interval_45142 chr13 52637275 52638628 + 0 NA intron (ENSMUSG00000021457.14, intron 9 of 13) protein_coding-intron (ENSMUSG00000021457.14, intron 9 of 13) 54448 ENSMUSG00000021457.14 ENSMUSG00000021457 ENSMUST00000140339 Syk protein_coding Interval_40994 chr12 110489763 110490659 + 0 NA intron (ENSMUSG00000017843.14, intron 1 of 11) protein_coding-intron (ENSMUSG00000017843.14, intron 1 of 13) -4595 ENSMUSG00000113585.1 ENSMUSG00000113585 ENSMUST00000222863 Gm19605 processed_transcript Interval_118521 chr4 132239853 132240155 + 0 NA intron (ENSMUSG00000028901.13, intron 4 of 9) protein_coding-intron (ENSMUSG00000028901.13, intron 3 of 8) 5262 ENSMUSG00000084105.1 ENSMUSG00000084105 ENSMUST00000119355 Gm13252 processed_pseudogene Interval_4622 chr1 75492641 75493079 + 0 NA promoter-TSS (ENSMUSG00000026211.17) protein_coding-promoter-TSS (ENSMUSG00000026211.17) -4782 ENSMUSG00000026211.17 ENSMUSG00000026211 ENSMUST00000145306 Obsl1 protein_coding Interval_168352 chr9 79402540 79403568 + 0 NA Intergenic Intergenic -7585 ENSMUSG00000111560.1 ENSMUSG00000111560 ENSMUST00000215133 Gm35262 processed_pseudogene Interval_150757 chr7 114139409 114141300 + 0 NA Intergenic Intergenic -22590 ENSMUSG00000055723.6 ENSMUSG00000055723 ENSMUST00000210075 Rras2 protein_coding Interval_136089 chr6 50718699 50719010 + 0 NA Intergenic Intergenic 28958 ENSMUSG00000107672.1 ENSMUSG00000107672 ENSMUST00000203603 Gm3017 processed_pseudogene Interval_11616 chr1 183329818 183330367 + 0 NA intron (ENSMUSG00000056050.13, intron 20 of 23) protein_coding-intron (ENSMUSG00000056050.13, intron 19 of 22) 7979 ENSMUSG00000042901.10 ENSMUSG00000042901 ENSMUST00000195268 Aida protein_coding Interval_29001 chr11 79839335 79840421 + 0 NA intron (ENSMUSG00000086474.2, intron 2 of 4) lincRNA-intron (ENSMUSG00000086474.2, intron 2 of 4) -34706 ENSMUSG00000086474.2 ENSMUSG00000086474 ENSMUST00000162268 9130204K15Rik lincRNA Interval_90670 chr2 31786856 31787692 + 0 NA intron (ENSMUSG00000026842.16, intron 5 of 11) protein_coding-intron (ENSMUSG00000026842.16, intron 4 of 10) 23306 ENSMUSG00000043102.2 ENSMUSG00000043102 ENSMUST00000057407 Qrfp protein_coding Interval_158433 chr8 83701856 83702271 + 0 NA Intergenic Intergenic -13209 ENSMUSG00000005481.18 ENSMUSG00000005481 ENSMUST00000138789 Ddx39 protein_coding Interval_129369 chr5 119588596 119589499 + 0 NA intron (ENSMUSG00000087516.7, intron 1 of 5) antisense-intron (ENSMUSG00000087516.7, intron 1 of 5) 9157 ENSMUSG00000106991.1 ENSMUSG00000106991 ENSMUST00000202546 Gm43399 TEC Interval_127282 chr5 102083075 102083537 + 0 NA Intergenic Intergenic 13088 ENSMUSG00000106492.1 ENSMUSG00000106492 ENSMUST00000196325 Gm29707 lincRNA Interval_73718 chr17 42975469 42975681 + 0 NA Intergenic Intergenic -40993 ENSMUSG00000023915.5 ENSMUSG00000023915 ENSMUST00000233482 Tnfrsf21 protein_coding Interval_27164 chr11 63561163 63561350 + 0 NA Intergenic Intergenic 39667 ENSMUSG00000082256.1 ENSMUSG00000082256 ENSMUST00000119770 Gm12287 processed_pseudogene Interval_159572 chr8 95533759 95534556 + 0 NA promoter-TSS (ENSMUSG00000036598.4) protein_coding-promoter-TSS (ENSMUSG00000036598.4) 72 ENSMUSG00000036598.4 ENSMUSG00000036598 ENSMUST00000041569 Ccdc113 protein_coding Interval_157586 chr8 71558313 71559572 + 0 NA promoter-TSS (ENSMUSG00000043664.7) protein_coding-promoter-TSS (ENSMUSG00000043664.7) -71 ENSMUSG00000043664.7 ENSMUSG00000043664 ENSMUST00000052072 Tmem221 protein_coding Interval_93577 chr2 74629118 74629420 + 0 NA Intergenic Intergenic -2571 ENSMUSG00000082973.1 ENSMUSG00000082973 ENSMUST00000117554 Gm13672 processed_pseudogene Interval_159547 chr8 95373818 95374663 + 0 NA exon (ENSMUSG00000031790.8, exon 10 of 10) protein_coding-exon (ENSMUSG00000031790.8, exon 10 of 10) 4369 ENSMUSG00000031790.8 ENSMUSG00000031790 ENSMUST00000212235 Mmp15 protein_coding Interval_160150 chr8 106741369 106742077 + 0 NA intron (ENSMUSG00000041949.6, intron 12 of 13) protein_coding-intron (ENSMUSG00000041949.6, intron 12 of 17) 58608 ENSMUSG00000041949.6 ENSMUSG00000041949 ENSMUST00000211979 Tango6 protein_coding Interval_80387 chr18 41043131 41043491 + 0 NA Intergenic Intergenic 80032 ENSMUSG00000088611.1 ENSMUSG00000088611 ENSMUST00000157986 Gm22483 misc_RNA Interval_77130 chr17 86766551 86766864 + 0 NA intron (ENSMUSG00000024140.10, intron 1 of 15) protein_coding-intron (ENSMUSG00000024140.10, intron 1 of 15) -6563 ENSMUSG00000117538.1 ENSMUSG00000117538 ENSMUST00000234482 Gm50008 TEC Interval_79519 chr18 32673808 32674632 + 0 NA Intergenic Intergenic -52164 ENSMUSG00000087715.1 ENSMUSG00000087715 ENSMUST00000157090 Gm25826 snoRNA Interval_160185 chr8 106996244 106996952 + 0 NA intron (ENSMUSG00000041308.6, intron 3 of 6) protein_coding-intron (ENSMUSG00000041308.6, intron 3 of 5) 13013 ENSMUSG00000088969.1 ENSMUSG00000088969 ENSMUST00000158344 Gm22085 snRNA Interval_80009 chr18 36612122 36612449 + 0 NA intron (ENSMUSG00000024483.19, intron 11 of 33) protein_coding-intron (ENSMUSG00000024483.19, intron 11 of 33) -2027 ENSMUSG00000024483.19 ENSMUSG00000024483 ENSMUST00000116653 Ankhd1 protein_coding Interval_66599 chr16 35540348 35542779 + 0 NA promoter-TSS (ENSMUSG00000052133.16) protein_coding-promoter-TSS (ENSMUSG00000052133.16) 31993 ENSMUSG00000052192.5 ENSMUSG00000052192 ENSMUST00000143451 Gm5963 processed_pseudogene Interval_32055 chr11 104872273 104873181 + 0 NA intron (ENSMUSG00000040838.10, intron 69 of 187) protein_coding-intron (ENSMUSG00000040838.10, intron 69 of 187) -55489 ENSMUSG00000080694.1 ENSMUSG00000080694 ENSMUST00000118253 Gm11621 processed_pseudogene Interval_31268 chr11 99238580 99238773 + 0 NA exon (ENSMUSG00000035849.14, exon 3 of 6) protein_coding-exon (ENSMUSG00000035849.14, exon 3 of 6) 199 ENSMUSG00000035849.14 ENSMUSG00000035849 ENSMUST00000154622 Krt222 protein_coding Interval_168843 chr9 87960891 87961474 + 0 NA Intergenic Intergenic 60367 ENSMUSG00000077553.1 ENSMUSG00000077553 ENSMUST00000104365 Gm23176 snoRNA Interval_132000 chr5 142129545 142130803 + 0 NA intron (ENSMUSG00000039683.16, intron 31 of 44) protein_coding-intron (ENSMUSG00000039683.16, intron 27 of 40) -152932 ENSMUSG00000097947.1 ENSMUSG00000097947 ENSMUST00000182990 Gm26970 processed_pseudogene Interval_54095 chr14 65255044 65255771 + 0 NA intron (ENSMUSG00000007989.7, intron 1 of 6) protein_coding-intron (ENSMUSG00000007989.7, intron 1 of 6) 7056 ENSMUSG00000007989.7 ENSMUSG00000007989 ENSMUST00000127272 Fzd3 protein_coding Interval_54902 chr14 76126654 76127898 + 0 NA intron (ENSMUSG00000022009.1, intron 7 of 9) protein_coding-intron (ENSMUSG00000022009.1, intron 7 of 9) 16385 ENSMUSG00000022009.1 ENSMUSG00000022009 ENSMUST00000022586 Nufip1 protein_coding Interval_872 chr1 12842511 12842796 + 0 NA promoter-TSS (ENSMUSG00000016918.15) protein_coding-promoter-TSS (ENSMUSG00000016918.15) 123189 ENSMUSG00000016918.15 ENSMUSG00000016918 ENSMUST00000185780 Sulf1 protein_coding Interval_135580 chr6 40775543 40775795 + 0 NA Intergenic Intergenic -3042 ENSMUSG00000102802.3 ENSMUSG00000102802 ENSMUST00000195870 Mgam2-ps protein_coding Interval_39073 chr12 84867539 84867792 + 0 NA intron (ENSMUSG00000002020.15, intron 2 of 11) protein_coding-intron (ENSMUSG00000002020.15, intron 2 of 35) -8104 ENSMUSG00000092130.2 ENSMUSG00000092130 ENSMUST00000220643 D030025P21Rik antisense Interval_19185 chr10 95357843 95358207 + 0 NA intron (ENSMUSG00000100550.2, intron 3 of 4) lincRNA-intron (ENSMUSG00000100550.2, intron 1 of 2) 3137 ENSMUSG00000100550.2 ENSMUSG00000100550 ENSMUST00000219492 2310039L15Rik lincRNA Interval_129164 chr5 117937973 117938803 + 0 NA intron (ENSMUSG00000098072.1, intron 3 of 4) protein_coding-intron (ENSMUSG00000029361.18, intron 22 of 28) 1130 ENSMUSG00000098072.1 ENSMUSG00000098072 ENSMUST00000182216 Gm26995 antisense Interval_127080 chr5 100149704 100150225 + 0 NA intron (ENSMUSG00000050640.16, intron 1 of 5) protein_coding-intron (ENSMUSG00000050640.16, intron 1 of 7) 9606 ENSMUSG00000050640.16 ENSMUSG00000050640 ENSMUST00000139520 Tmem150c protein_coding Interval_39978 chr12 100210208 100211055 + 0 NA TTS (ENSMUSG00000001175.16) protein_coding-TTS (ENSMUSG00000001175.16) 11102 ENSMUSG00000001175.16 ENSMUSG00000001175 ENSMUST00000127300 Calm1 protein_coding Interval_78175 chr18 9779108 9779350 + 0 NA intron (ENSMUSG00000036103.9, intron 2 of 9) protein_coding-intron (ENSMUSG00000036103.9, intron 2 of 10) -15967 ENSMUSG00000089054.1 ENSMUSG00000089054 ENSMUST00000158429 Gm23350 snRNA Interval_146467 chr7 46138057 46138725 + 0 NA promoter-TSS (ENSMUSG00000040136.10) protein_coding-promoter-TSS (ENSMUSG00000040136.10) 15039 ENSMUSG00000110240.1 ENSMUSG00000110240 ENSMUST00000211767 Gm45486 antisense Interval_142792 chr6 145733025 145733467 + 0 NA Intergenic Intergenic 13027 ENSMUSG00000085658.1 ENSMUSG00000085658 ENSMUST00000144757 Gm15704 lincRNA Interval_107695 chr3 111183682 111184032 + 0 NA Intergenic Intergenic 75357 ENSMUSG00000106487.1 ENSMUSG00000106487 ENSMUST00000199816 Gm43407 processed_pseudogene Interval_55153 chr14 78687711 78688325 + 0 NA intron (ENSMUSG00000034731.11, intron 2 of 29) protein_coding-intron (ENSMUSG00000034731.11, intron 1 of 28) -15792 ENSMUSG00000115107.1 ENSMUSG00000115107 ENSMUST00000228480 Gm18368 processed_pseudogene Interval_55287 chr14 80272314 80272516 + 0 NA Intergenic Intergenic 57485 ENSMUSG00000115334.1 ENSMUSG00000115334 ENSMUST00000226677 Gm17923 processed_pseudogene Interval_92446 chr2 59769303 59770088 + 0 NA intron (ENSMUSG00000035168.16, intron 1 of 2) protein_coding-intron (ENSMUSG00000035168.16, intron 5 of 26) -36373 ENSMUSG00000035168.16 ENSMUSG00000035168 ENSMUST00000147650 Tanc1 protein_coding Interval_15281 chr10 44069177 44069400 + 0 NA intron (ENSMUSG00000019866.15, intron 1 of 21) protein_coding-intron (ENSMUSG00000019866.15, intron 1 of 21) -10510 ENSMUSG00000019866.15 ENSMUSG00000019866 ENSMUST00000239010 Crybg1 protein_coding Interval_121182 chr4 153861820 153862820 + 0 NA Intergenic Intergenic -14064 ENSMUSG00000077519.1 ENSMUSG00000077519 ENSMUST00000104331 Gm25880 snoRNA Interval_115414 chr4 98760992 98761591 + 0 NA intron (ENSMUSG00000035407.8, intron 1 of 1) protein_coding-intron (ENSMUSG00000035407.8, intron 9 of 9) 10184 ENSMUSG00000035407.8 ENSMUSG00000035407 ENSMUST00000137270 Kank4 protein_coding Interval_126217 chr5 82653504 82654375 + 0 NA Intergenic Intergenic 145126 ENSMUSG00000080586.1 ENSMUSG00000080586 ENSMUST00000116936 Mir1187 miRNA Interval_47790 chr13 92833957 92834219 + 0 NA Intergenic Intergenic -11110 ENSMUSG00000021704.8 ENSMUSG00000021704 ENSMUST00000224368 Mtx3 protein_coding Interval_32757 chr11 110371657 110372468 + 0 NA Intergenic Intergenic -34346 ENSMUSG00000018800.14 ENSMUSG00000018800 ENSMUST00000148984 Abca5 protein_coding Interval_113279 chr4 53045740 53045948 + 0 NA exon (ENSMUSG00000015243.4, exon 39 of 50) protein_coding-exon (ENSMUSG00000015243.4, exon 39 of 50) -4918 ENSMUSG00000015243.4 ENSMUSG00000015243 ENSMUST00000149127 Abca1 protein_coding Interval_135059 chr6 35027133 35027995 + 0 NA intron (ENSMUSG00000038784.13, intron 10 of 11) protein_coding-intron (ENSMUSG00000038784.13, intron 10 of 10) -39160 ENSMUSG00000029847.13 ENSMUSG00000029847 ENSMUST00000144079 Slc23a4 protein_coding Interval_76835 chr17 84413872 84414605 + 0 NA intron (ENSMUSG00000024251.10, intron 7 of 14) protein_coding-intron (ENSMUSG00000024251.10, intron 22 of 37) 22809 ENSMUSG00000096415.1 ENSMUSG00000096415 ENSMUST00000179017 Gm24722 snRNA Interval_43371 chr13 29814435 29815254 + 0 NA intron (ENSMUSG00000006191.17, intron 4 of 5) protein_coding-intron (ENSMUSG00000006191.17, intron 4 of 15) -125439 ENSMUSG00000086893.1 ENSMUSG00000086893 ENSMUST00000144277 Gm11365 antisense Interval_103373 chr3 40978730 40979115 + 0 NA Intergenic Intergenic -13771 ENSMUSG00000064927.1 ENSMUSG00000064927 ENSMUST00000082993 Gm22043 snRNA Interval_69375 chr16 92545872 92546098 + 0 NA Intergenic Intergenic 7158 ENSMUSG00000116709.1 ENSMUSG00000116709 ENSMUST00000232213 Gm49722 lincRNA Interval_5799 chr1 91928809 91929513 + 0 NA exon (ENSMUSG00000026313.16, exon 27 of 27) protein_coding-exon (ENSMUSG00000026313.16, exon 27 of 27) 12901 ENSMUSG00000102745.1 ENSMUSG00000102745 ENSMUST00000193764 Gm37600 TEC Interval_59242 chr15 49493004 49493265 + 0 NA Intergenic Intergenic -45061 ENSMUSG00000065760.1 ENSMUSG00000065760 ENSMUST00000083826 Gm23848 snRNA Interval_51801 chr14 32304757 32305340 + 0 NA promoter-TSS (ENSMUSG00000115813.1) lincRNA-promoter-TSS (ENSMUSG00000115813.1) 3124 ENSMUSG00000115813.1 ENSMUSG00000115813 ENSMUST00000226403 Gm46447 lincRNA Interval_98125 chr2 148455715 148456023 + 0 NA Intergenic Intergenic -12306 ENSMUSG00000027435.8 ENSMUSG00000027435 ENSMUST00000099269 Cd93 protein_coding Interval_55940 chr14 102994876 102996038 + 0 NA intron (ENSMUSG00000114980.1, intron 2 of 2) lincRNA-intron (ENSMUSG00000114980.1, intron 2 of 2) -12820 ENSMUSG00000098557.1 ENSMUSG00000098557 ENSMUST00000183756 Kctd12 protein_coding Interval_93046 chr2 69789172 69790702 + 0 NA promoter-TSS (ENSMUSG00000070883.3) protein_coding-promoter-TSS (ENSMUSG00000070883.3) -1035 ENSMUSG00000027088.10 ENSMUSG00000027088 ENSMUST00000180290 Phospho2 protein_coding Interval_12159 chr1 190259505 190259745 + 0 NA Intergenic Intergenic -88945 ENSMUSG00000010175.13 ENSMUSG00000010175 ENSMUST00000177288 Prox1 protein_coding Interval_20223 chr10 116243729 116244220 + 0 NA intron (ENSMUSG00000020151.16, intron 7 of 10) protein_coding-intron (ENSMUSG00000020151.16, intron 10 of 13) -31549 ENSMUSG00000020154.10 ENSMUSG00000020154 ENSMUST00000092167 Ptprb protein_coding Interval_158957 chr8 88236256 88236517 + 0 NA intron (ENSMUSG00000036779.12, intron 2 of 12) protein_coding-intron (ENSMUSG00000036779.12, intron 2 of 11) -15586 ENSMUSG00000036779.12 ENSMUSG00000036779 ENSMUST00000154115 Tent4b protein_coding Interval_102984 chr3 34024851 34025189 + 0 NA intron (ENSMUSG00000027680.15, intron 1 of 14) protein_coding-intron (ENSMUSG00000027680.15, intron 1 of 16) -5138 ENSMUSG00000105535.1 ENSMUSG00000105535 ENSMUST00000200602 Gm43077 lincRNA Interval_81927 chr18 65938197 65939350 + 0 NA promoter-TSS (ENSMUSG00000024518.4) protein_coding-promoter-TSS (ENSMUSG00000024518.4) 333 ENSMUSG00000024518.4 ENSMUSG00000024518 ENSMUST00000237506 Rax protein_coding Interval_93994 chr2 80549992 80551197 + 0 NA promoter-TSS (ENSMUSG00000081487.1) processed_pseudogene-promoter-TSS (ENSMUSG00000081487.1) -198 ENSMUSG00000081487.1 ENSMUSG00000081487 ENSMUST00000119360 Gm13689 processed_pseudogene Interval_17801 chr10 80167472 80168589 + 0 NA intron (ENSMUSG00000045193.13, intron 1 of 5) protein_coding-intron (ENSMUSG00000045193.13, intron 1 of 7) 2045 ENSMUSG00000045193.13 ENSMUSG00000045193 ENSMUST00000147190 Cirbp protein_coding Interval_29577 chr11 85093351 85093626 + 0 NA intron (ENSMUSG00000000804.14, intron 2 of 3) protein_coding-intron (ENSMUSG00000000804.14, intron 2 of 33) 2061 ENSMUSG00000083876.1 ENSMUSG00000083876 ENSMUST00000118598 Gm11439 processed_pseudogene Interval_29637 chr11 85720091 85720327 + 0 NA promoter-TSS (ENSMUSG00000086199.7) antisense-promoter-TSS (ENSMUSG00000086199.7) -465 ENSMUSG00000086199.7 ENSMUSG00000086199 ENSMUST00000146806 Bcas3os1 antisense Interval_110376 chr3 157552092 157552338 + 0 NA Intergenic Intergenic 7936 ENSMUSG00000065431.1 ENSMUSG00000065431 ENSMUST00000083497 Mir186 miRNA Interval_37402 chr12 67220715 67222980 + 0 NA promoter-TSS (ENSMUSG00000034912.18) protein_coding-promoter-TSS (ENSMUSG00000034912.18) -98927 ENSMUSG00000113698.1 ENSMUSG00000113698 ENSMUST00000221673 Gm47987 TEC Interval_125697 chr5 73343864 73344700 + 0 NA Intergenic Intergenic -5724 ENSMUSG00000029153.11 ENSMUSG00000029153 ENSMUST00000200821 Ociad2 protein_coding Interval_6275 chr1 105118475 105119215 + 0 NA intron (ENSMUSG00000099669.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000099669.1, intron 1 of 2) 2391 ENSMUSG00000099669.1 ENSMUSG00000099669 ENSMUST00000187882 Gm29012 lincRNA Interval_40950 chr12 110187115 110189577 + 0 NA promoter-TSS (ENSMUSG00000113733.1) lincRNA-promoter-TSS (ENSMUSG00000113733.1) -285 ENSMUSG00000113733.1 ENSMUSG00000113733 ENSMUST00000222571 Gm34785 lincRNA Interval_19572 chr10 103399635 103400049 + 0 NA intron (ENSMUSG00000019894.14, intron 5 of 11) protein_coding-intron (ENSMUSG00000019894.14, intron 6 of 12) 6392 ENSMUSG00000019894.14 ENSMUSG00000019894 ENSMUST00000219936 Slc6a15 protein_coding Interval_93807 chr2 77073335 77074781 + 0 NA TTS (ENSMUSG00000044033.16) protein_coding-TTS (ENSMUSG00000044033.16) 294 ENSMUSG00000105724.1 ENSMUSG00000105724 ENSMUST00000200081 Gm44360 miRNA Interval_15705 chr10 53825530 53826025 + 0 NA Intergenic Intergenic -22248 ENSMUSG00000112809.1 ENSMUSG00000112809 ENSMUST00000217870 Gm47915 lincRNA Interval_5901 chr1 93077187 93077648 + 0 NA TTS (ENSMUSG00000014602.15) protein_coding-TTS (ENSMUSG00000014602.15) 46686 ENSMUSG00000101378.1 ENSMUSG00000101378 ENSMUST00000191586 Gm28086 lincRNA Interval_146115 chr7 44042678 44042963 + 0 NA intron (ENSMUSG00000108328.1, intron 1 of 3) unprocessed_pseudogene-intron (ENSMUSG00000108328.1, intron 1 of 3) 710 ENSMUSG00000108328.1 ENSMUSG00000108328 ENSMUST00000206751 Gm45196 unprocessed_pseudogene Interval_132016 chr5 142306264 142306967 + 0 NA Intergenic Intergenic 23509 ENSMUSG00000097947.1 ENSMUSG00000097947 ENSMUST00000182990 Gm26970 processed_pseudogene Interval_22255 chr11 8245564 8246892 + 0 NA Intergenic Intergenic -132134 ENSMUSG00000082459.1 ENSMUSG00000082459 ENSMUST00000122321 Gm11988 processed_pseudogene Interval_21992 chr11 5628840 5629554 + 0 NA exon (ENSMUSG00000020481.15, exon 16 of 27) protein_coding-exon (ENSMUSG00000020481.15, exon 16 of 27) -4942 ENSMUSG00000081021.1 ENSMUSG00000081021 ENSMUST00000120982 Gm11964 processed_pseudogene Interval_97719 chr2 143268606 143269325 + 0 NA Intergenic Intergenic -80547 ENSMUSG00000083787.1 ENSMUSG00000083787 ENSMUST00000119735 Gm11644 processed_pseudogene Interval_79549 chr18 33575142 33576639 + 0 NA promoter-TSS (ENSMUSG00000117689.1) processed_pseudogene-promoter-TSS (ENSMUSG00000117689.1) -578 ENSMUSG00000117689.1 ENSMUSG00000117689 ENSMUST00000237469 Gm50392 processed_pseudogene Interval_39137 chr12 85367945 85369194 + 0 NA intron (ENSMUSG00000021248.9, intron 1 of 4) protein_coding-intron (ENSMUSG00000021248.9, intron 1 of 4) -4924 ENSMUSG00000113752.1 ENSMUSG00000113752 ENSMUST00000222887 Gm47817 TEC Interval_35746 chr12 28822723 28823268 + 0 NA intron (ENSMUSG00000036613.8, intron 4 of 9) protein_coding-intron (ENSMUSG00000036613.8, intron 4 of 9) 12857 ENSMUSG00000113886.1 ENSMUSG00000113886 ENSMUST00000222829 Gm48905 sense_intronic Interval_91459 chr2 39007716 39008760 + 0 NA promoter-TSS (ENSMUSG00000026755.14) protein_coding-promoter-TSS (ENSMUSG00000026755.14) 97 ENSMUSG00000026755.14 ENSMUSG00000026755 ENSMUST00000135049 Arpc5l protein_coding Interval_133079 chr5 149692741 149692987 + 0 NA intron (ENSMUSG00000051950.10, intron 1 of 14) protein_coding-intron (ENSMUSG00000051950.10, intron 1 of 14) -31641 ENSMUSG00000080002.2 ENSMUSG00000080002 ENSMUST00000116118 Gm5566 processed_pseudogene Interval_115109 chr4 90116917 90117573 + 0 NA Intergenic Intergenic -68282 ENSMUSG00000085690.1 ENSMUSG00000085690 ENSMUST00000145751 Gm12629 lincRNA Interval_52479 chr14 46838573 46839020 + 0 NA intron (ENSMUSG00000055128.15, intron 1 of 6) protein_coding-intron (ENSMUSG00000055128.15, intron 1 of 5) -6017 ENSMUSG00000115417.1 ENSMUSG00000115417 ENSMUST00000228424 Gm48949 sense_intronic Interval_52161 chr14 37477714 37477929 + 0 NA Intergenic Intergenic -9923 ENSMUSG00000114741.1 ENSMUSG00000114741 ENSMUST00000223601 Gm47971 TEC Interval_19692 chr10 108146201 108146410 + 0 NA Intergenic Intergenic -3873 ENSMUSG00000112401.1 ENSMUSG00000112401 ENSMUST00000219675 Gm47999 processed_pseudogene Interval_12944 chr10 8538487 8539073 + 0 NA Intergenic Intergenic -104154 ENSMUSG00000077582.1 ENSMUSG00000077582 ENSMUST00000104394 Gm24374 snRNA Interval_67546 chr16 50528596 50530723 + 0 NA intron (ENSMUSG00000097694.8, intron 1 of 5) lincRNA-intron (ENSMUSG00000097694.8, intron 1 of 5) 3414 ENSMUSG00000097694.8 ENSMUSG00000097694 ENSMUST00000181884 G730013B05Rik lincRNA Interval_121604 chr5 3825909 3826132 + 0 NA TTS (ENSMUSG00000000600.15) protein_coding-TTS (ENSMUSG00000000600.15) -19167 ENSMUSG00000040367.2 ENSMUSG00000040367 ENSMUST00000143027 Lrrd1 protein_coding Interval_132923 chr5 148756186 148757581 + 0 NA Intergenic Intergenic -3443 ENSMUSG00000084513.1 ENSMUSG00000084513 ENSMUST00000122564 n-R5s179 rRNA Interval_78241 chr18 10617462 10618480 + 0 NA intron (ENSMUSG00000002477.5, intron 1 of 2) protein_coding-intron (ENSMUSG00000002477.5, intron 1 of 3) 102 ENSMUSG00000002477.5 ENSMUSG00000002477 ENSMUST00000234077 Snrpd1 protein_coding Interval_39077 chr12 84892223 84892524 + 0 NA Intergenic Intergenic 10549 ENSMUSG00000113079.1 ENSMUSG00000113079 ENSMUST00000221790 Gm48709 lincRNA Interval_27879 chr11 70585092 70586923 + 0 NA intron (ENSMUSG00000020827.18, intron 1 of 31) protein_coding-intron (ENSMUSG00000020827.18, intron 1 of 32) -18193 ENSMUSG00000020827.18 ENSMUSG00000020827 ENSMUST00000132208 Mink1 protein_coding Interval_156847 chr8 61059315 61059986 + 0 NA intron (ENSMUSG00000031644.19, intron 16 of 31) protein_coding-intron (ENSMUSG00000031644.19, intron 17 of 32) 9601 ENSMUSG00000109708.1 ENSMUSG00000109708 ENSMUST00000211661 Gm45809 TEC Interval_26078 chr11 53997537 53997724 + 0 NA intron (ENSMUSG00000020334.6, intron 2 of 4) protein_coding-intron (ENSMUSG00000020334.6, intron 3 of 9) -28027 ENSMUSG00000063652.10 ENSMUSG00000063652 ENSMUST00000143352 Slc22a21 protein_coding Interval_24882 chr11 40726789 40727739 + 0 NA intron (ENSMUSG00000020330.16, intron 3 of 6) protein_coding-intron (ENSMUSG00000020330.16, intron 3 of 17) 6152 ENSMUSG00000020330.16 ENSMUSG00000020330 ENSMUST00000152749 Hmmr protein_coding Interval_129900 chr5 122987078 122989628 + 0 NA intron (ENSMUSG00000105311.1, intron 2 of 2) protein_coding-intron (ENSMUSG00000029475.17, intron 1 of 22) -1001 ENSMUSG00000056735.5 ENSMUSG00000056735 ENSMUST00000148466 A930024E05Rik antisense Interval_131884 chr5 140584028 140584239 + 0 NA Intergenic Intergenic -19062 ENSMUSG00000036586.6 ENSMUSG00000036586 ENSMUST00000042993 Grifin protein_coding Interval_161572 chr8 121283507 121283930 + 0 NA intron (ENSMUSG00000097384.1, intron 1 of 1) protein_coding-intron (ENSMUSG00000092329.1, intron 1 of 15) 73118 ENSMUSG00000097384.1 ENSMUSG00000097384 ENSMUST00000181200 Gm26815 lincRNA Interval_20546 chr10 118794003 118794474 + 0 NA Intergenic Intergenic 11021 ENSMUSG00000112198.1 ENSMUSG00000112198 ENSMUST00000218715 Gm4065 lincRNA Interval_87998 chr19 57667019 57668883 + 0 NA intron (ENSMUSG00000054843.9, intron 9 of 28) protein_coding-intron (ENSMUSG00000054843.9, intron 9 of 28) 56917 ENSMUSG00000054843.9 ENSMUSG00000054843 ENSMUST00000077282 Atrnl1 protein_coding Interval_146383 chr7 45616680 45617789 + 0 NA promoter-TSS (ENSMUSG00000008461.6) protein_coding-promoter-TSS (ENSMUSG00000008461.6) -55 ENSMUSG00000008461.6 ENSMUSG00000008461 ENSMUST00000209379 Fut1 protein_coding Interval_40173 chr12 102282044 102284414 + 0 NA promoter-TSS (ENSMUSG00000044456.16) protein_coding-promoter-TSS (ENSMUSG00000044456.16) 61 ENSMUSG00000044456.16 ENSMUSG00000044456 ENSMUST00000139686 Rin3 protein_coding Interval_9767 chr1 161968644 161969766 + 0 NA promoter-TSS (ENSMUSG00000026698.8) protein_coding-promoter-TSS (ENSMUSG00000026698.8) 5 ENSMUSG00000103393.1 ENSMUSG00000103393 ENSMUST00000161826 Gm38304 antisense Interval_132737 chr5 147483957 147484651 + 0 NA intron (ENSMUSG00000029647.15, intron 4 of 18) protein_coding-intron (ENSMUSG00000029647.15, intron 4 of 18) 44914 ENSMUSG00000107085.1 ENSMUSG00000107085 ENSMUST00000202594 Gm42883 processed_pseudogene Interval_83105 chr18 81377141 81377561 + 0 NA Intergenic Intergenic 80548 ENSMUSG00000118227.1 ENSMUSG00000118227 ENSMUST00000236435 Gm30288 lincRNA Interval_145276 chr7 31102918 31103896 + 0 NA promoter-TSS (ENSMUSG00000001249.14) protein_coding-promoter-TSS (ENSMUSG00000001249.14) -893 ENSMUSG00000001249.14 ENSMUSG00000001249 ENSMUST00000168623 Hpn protein_coding Interval_125830 chr5 74800611 74801415 + 0 NA Intergenic Intergenic 51131 ENSMUSG00000106987.1 ENSMUSG00000106987 ENSMUST00000202942 Gm42575 lincRNA Interval_4238 chr1 72074776 72074981 + 0 NA Intergenic Intergenic -12979 ENSMUSG00000101496.1 ENSMUSG00000101496 ENSMUST00000189382 Gm8885 processed_pseudogene Interval_172823 chrX 50614504 50615171 + 0 NA TTS (ENSMUSG00000085396.7) processed_transcript-TTS (ENSMUSG00000085396.7) -49954 ENSMUSG00000085396.7 ENSMUSG00000085396 ENSMUST00000148530 Firre processed_transcript Interval_93166 chr2 70793097 70793377 + 0 NA intron (ENSMUSG00000041997.16, intron 1 of 21) protein_coding-intron (ENSMUSG00000041997.16, intron 1 of 19) -63452 ENSMUSG00000082303.1 ENSMUSG00000082303 ENSMUST00000120668 Gm13633 processed_pseudogene Interval_4965 chr1 83004235 83004423 + 0 NA exon (ENSMUSG00000101784.1, exon 1 of 1) processed_pseudogene-exon (ENSMUSG00000101784.1, exon 1 of 1) 578 ENSMUSG00000101784.1 ENSMUSG00000101784 ENSMUST00000185805 Gm7553 processed_pseudogene Interval_6627 chr1 118398549 118399285 + 0 NA intron (ENSMUSG00000064302.13, intron 1 of 38) protein_coding-intron (ENSMUSG00000064302.13, intron 1 of 39) 41605 ENSMUSG00000099936.1 ENSMUSG00000099936 ENSMUST00000190194 Gm28867 lincRNA Interval_25473 chr11 48808837 48809673 + 0 NA TTS (ENSMUSG00000040365.14) protein_coding-TTS (ENSMUSG00000040365.14) 6116 ENSMUSG00000064780.1 ENSMUSG00000064780 ENSMUST00000082846 Snord95 snoRNA Interval_18205 chr10 83691884 83692543 + 0 NA Intergenic Intergenic 32942 ENSMUSG00000112072.1 ENSMUSG00000112072 ENSMUST00000218849 Gm47244 processed_pseudogene Interval_95566 chr2 112352881 112353140 + 0 NA exon (ENSMUSG00000027130.15, exon 18 of 25) protein_coding-exon (ENSMUSG00000027130.15, exon 18 of 25) -1192 ENSMUSG00000027130.15 ENSMUSG00000027130 ENSMUST00000137896 Slc12a6 protein_coding Interval_9748 chr1 161736875 161737099 + 0 NA Intergenic Intergenic -9069 ENSMUSG00000102399.1 ENSMUSG00000102399 ENSMUST00000195878 Gm5049 processed_pseudogene Interval_113170 chr4 48850132 48850409 + 0 NA Intergenic Intergenic -46229 ENSMUSG00000077417.1 ENSMUSG00000077417 ENSMUST00000104229 Gm23746 snoRNA Interval_33842 chr11 118927028 118927614 + 0 NA Intergenic Intergenic -60101 ENSMUSG00000084887.1 ENSMUSG00000084887 ENSMUST00000127327 Gm11749 sense_intronic Interval_38900 chr12 83694529 83694798 + 0 NA intron (ENSMUSG00000019969.14, intron 1 of 11) protein_coding-intron (ENSMUSG00000019969.14, intron 1 of 11) 6475 ENSMUSG00000019969.14 ENSMUSG00000019969 ENSMUST00000221072 Psen1 protein_coding Interval_107320 chr3 105778146 105778363 + 0 NA intron (ENSMUSG00000068798.10, intron 1 of 5) protein_coding-intron (ENSMUSG00000068798.10, intron 1 of 7) 6773 ENSMUSG00000106341.1 ENSMUSG00000106341 ENSMUST00000199706 Gm43330 sense_intronic Interval_12720 chr10 4485982 4486730 + 0 NA intron (ENSMUSG00000019767.12, intron 1 of 10) protein_coding-intron (ENSMUSG00000019767.12, intron 1 of 10) 2122 ENSMUSG00000065371.1 ENSMUSG00000065371 ENSMUST00000083437 Gm22739 snRNA Interval_102569 chr3 27902067 27902786 + 0 NA Intergenic Intergenic -6058 ENSMUSG00000043164.3 ENSMUSG00000043164 ENSMUST00000058077 Tmem212 protein_coding Interval_174658 chrX 162681381 162681870 + 0 NA Intergenic Intergenic 2618 ENSMUSG00000083963.1 ENSMUSG00000083963 ENSMUST00000117668 Gm15203 processed_pseudogene Interval_52103 chr14 36212756 36213069 + 0 NA Intergenic Intergenic 19129 ENSMUSG00000114494.1 ENSMUSG00000114494 ENSMUST00000224615 Gm48663 processed_pseudogene Interval_39069 chr12 84813821 84814098 + 0 NA intron (ENSMUSG00000002020.15, intron 9 of 11) protein_coding-intron (ENSMUSG00000002020.15, intron 9 of 35) 40668 ENSMUSG00000021241.7 ENSMUSG00000021241 ENSMUST00000220726 Isca2 protein_coding Interval_116014 chr4 106985899 106989833 + 0 NA intron (ENSMUSG00000061887.14, intron 1 of 4) protein_coding-intron (ENSMUSG00000061887.14, intron 4 of 17) 34633 ENSMUSG00000085581.1 ENSMUSG00000085581 ENSMUST00000129617 Gm12786 antisense Interval_33246 chr11 115454982 115456367 + 0 NA Intergenic Intergenic -6832 ENSMUSG00000045775.15 ENSMUSG00000045775 ENSMUST00000140739 Slc16a5 protein_coding Interval_105313 chr3 84820554 84821361 + 0 NA intron (ENSMUSG00000028086.15, intron 1 of 2) protein_coding-intron (ENSMUSG00000028086.15, intron 1 of 13) 5191 ENSMUSG00000028086.15 ENSMUSG00000028086 ENSMUST00000029727 Fbxw7 protein_coding Interval_521 chr1 6966409 6967037 + 0 NA Intergenic Intergenic -31494 ENSMUSG00000102534.1 ENSMUSG00000102534 ENSMUST00000193423 Gm37225 processed_pseudogene Interval_92079 chr2 53039122 53039553 + 0 NA intron (ENSMUSG00000036053.17, intron 3 of 26) protein_coding-intron (ENSMUSG00000036053.17, intron 3 of 26) 151850 ENSMUSG00000061136.16 ENSMUSG00000061136 ENSMUST00000132031 Prpf40a protein_coding Interval_84586 chr19 13792145 13792367 + 0 NA Intergenic Intergenic 5946 ENSMUSG00000044040.3 ENSMUSG00000044040 ENSMUST00000061993 Olfr1497 protein_coding Interval_26362 chr11 57310476 57311344 + 0 NA intron (ENSMUSG00000020524.16, intron 14 of 15) protein_coding-intron (ENSMUSG00000020524.16, intron 14 of 15) 134392 ENSMUSG00000020524.16 ENSMUSG00000020524 ENSMUST00000173531 Gria1 protein_coding Interval_26505 chr11 58201197 58202027 + 0 NA exon (ENSMUSG00000078853.8, exon 2 of 3) protein_coding-exon (ENSMUSG00000078853.8, exon 2 of 3) 2024 ENSMUSG00000078853.8 ENSMUSG00000078853 ENSMUST00000168280 Igtp protein_coding Interval_54051 chr14 64797275 64797738 + 0 NA intron (ENSMUSG00000060012.9, intron 2 of 2) protein_coding-intron (ENSMUSG00000060012.9, intron 37 of 39) -41594 ENSMUSG00000098837.1 ENSMUSG00000098837 ENSMUST00000184830 Gm20111 processed_pseudogene Interval_116599 chr4 115978978 115980948 + 0 NA intron (ENSMUSG00000034171.13, intron 13 of 14) protein_coding-intron (ENSMUSG00000034171.13, intron 13 of 14) 19974 ENSMUSG00000034171.13 ENSMUSG00000034171 ENSMUST00000150614 Faah protein_coding Interval_90306 chr2 29683089 29683285 + 0 NA intron (ENSMUSG00000039844.20, intron 3 of 23) protein_coding-intron (ENSMUSG00000039844.20, intron 2 of 25) 39372 ENSMUSG00000039844.20 ENSMUSG00000039844 ENSMUST00000123953 Rapgef1 protein_coding Interval_20532 chr10 118605341 118605533 + 0 NA Intergenic Intergenic -50085 ENSMUSG00000112230.2 ENSMUSG00000112230 ENSMUST00000220034 Ifngas1 lincRNA Interval_32101 chr11 105244591 105245079 + 0 NA intron (ENSMUSG00000020694.17, intron 6 of 6) protein_coding-intron (ENSMUSG00000020694.17, intron 8 of 20) 35982 ENSMUSG00000020694.17 ENSMUSG00000020694 ENSMUST00000146910 Tlk2 protein_coding Interval_126986 chr5 99182931 99183158 + 0 NA Intergenic Intergenic -11623 ENSMUSG00000105579.2 ENSMUSG00000105579 ENSMUST00000198339 Gm43251 lincRNA Interval_174221 chrX 140277107 140279576 + 0 NA promoter-TSS (ENSMUSG00000086441.1) lincRNA-promoter-TSS (ENSMUSG00000086441.1) -479 ENSMUSG00000086441.1 ENSMUSG00000086441 ENSMUST00000130153 Gm15046 lincRNA Interval_170119 chr9 104933128 104933632 + 0 NA intron (ENSMUSG00000032564.16, intron 7 of 12) protein_coding-intron (ENSMUSG00000032564.16, intron 7 of 15) 60701 ENSMUSG00000032564.16 ENSMUSG00000032564 ENSMUST00000213452 Cpne4 protein_coding Interval_6486 chr1 111826030 111826294 + 0 NA Intergenic Intergenic -7661 ENSMUSG00000102728.1 ENSMUSG00000102728 ENSMUST00000192902 Gm37934 TEC Interval_48525 chr13 99793762 99794832 + 0 NA Intergenic Intergenic -101768 ENSMUSG00000077673.1 ENSMUSG00000077673 ENSMUST00000104485 Gm24471 snoRNA Interval_104489 chr3 66635930 66636477 + 0 NA Intergenic Intergenic -72652 ENSMUSG00000103600.1 ENSMUSG00000103600 ENSMUST00000193914 Gm17952 processed_pseudogene Interval_94578 chr2 92400452 92401634 + 0 NA exon (ENSMUSG00000027223.15, exon 1 of 12) protein_coding-exon (ENSMUSG00000027223.15, exon 1 of 12) -7849 ENSMUSG00000084781.1 ENSMUSG00000084781 ENSMUST00000126002 D930015M05Rik processed_transcript Interval_58715 chr15 37300807 37301004 + 0 NA intron (ENSMUSG00000022286.16, intron 7 of 9) protein_coding-intron (ENSMUSG00000022286.16, intron 7 of 15) 15312 ENSMUSG00000022286.16 ENSMUSG00000022286 ENSMUST00000159221 Grhl2 protein_coding Interval_69575 chr16 94364041 94364250 + 0 NA TTS (ENSMUSG00000022940.17) protein_coding-TTS (ENSMUSG00000022940.17) -4833 ENSMUSG00000089814.1 ENSMUSG00000089814 ENSMUST00000117891 Gm15310 transcribed_processed_pseudogene Interval_6190 chr1 100695114 100695764 + 0 NA Intergenic Intergenic 41639 ENSMUSG00000100977.1 ENSMUSG00000100977 ENSMUST00000190334 Gm29334 processed_pseudogene Interval_43976 chr13 38620401 38621501 + 0 NA intron (ENSMUSG00000038982.10, intron 2 of 4) protein_coding-intron (ENSMUSG00000038982.10, intron 2 of 4) -14020 ENSMUSG00000114830.1 ENSMUSG00000114830 ENSMUST00000224644 Gm47400 antisense Interval_23625 chr11 23935341 23935532 + 0 NA Intergenic Intergenic -6582 ENSMUSG00000084206.1 ENSMUSG00000084206 ENSMUST00000117533 Gm12062 processed_pseudogene Interval_162673 chr9 7722862 7723226 + 0 NA promoter-TSS (ENSMUSG00000110887.1) processed_pseudogene-promoter-TSS (ENSMUSG00000110887.1) -103 ENSMUSG00000110887.1 ENSMUSG00000110887 ENSMUST00000214564 Cbx3-ps8 processed_pseudogene Interval_52237 chr14 40935308 40936311 + 0 NA intron (ENSMUSG00000037824.6, intron 1 of 8) protein_coding-intron (ENSMUSG00000037824.6, intron 1 of 8) -1493 ENSMUSG00000037824.6 ENSMUSG00000037824 ENSMUST00000224349 Tspan14 protein_coding Interval_29811 chr11 87001351 87003669 + 0 NA Intergenic Intergenic -5247 ENSMUSG00000088816.1 ENSMUSG00000088816 ENSMUST00000158191 Gm22387 scaRNA Interval_33398 chr11 116347577 116348199 + 0 NA promoter-TSS (ENSMUSG00000052949.14) protein_coding-promoter-TSS (ENSMUSG00000052949.14) 30 ENSMUSG00000052949.14 ENSMUSG00000052949 ENSMUST00000149682 Rnf157 protein_coding Interval_75637 chr17 69587676 69588162 + 0 NA Intergenic Intergenic 6858 ENSMUSG00000088581.1 ENSMUSG00000088581 ENSMUST00000157956 Gm22967 misc_RNA Interval_32366 chr11 107170091 107170449 + 0 NA intron (ENSMUSG00000018433.14, intron 16 of 17) protein_coding-intron (ENSMUSG00000018433.14, intron 16 of 17) 1962 ENSMUSG00000081103.1 ENSMUSG00000081103 ENSMUST00000117751 Rps12-ps26 processed_pseudogene Interval_63629 chr15 102437125 102437903 + 0 NA Intergenic Intergenic -7934 ENSMUSG00000023047.11 ENSMUSG00000023047 ENSMUST00000161376 Amhr2 protein_coding Interval_117157 chr4 120120179 120120382 + 0 NA intron (ENSMUSG00000028634.17, intron 2 of 5) protein_coding-intron (ENSMUSG00000028634.17, intron 5 of 8) -40926 ENSMUSG00000028635.7 ENSMUSG00000028635 ENSMUST00000030384 Edn2 protein_coding Interval_126338 chr5 86810492 86812230 + 0 NA intron (ENSMUSG00000035851.14, intron 2 of 16) protein_coding-intron (ENSMUSG00000035851.14, intron 1 of 16) 4950 ENSMUSG00000035851.14 ENSMUSG00000035851 ENSMUST00000123625 Ythdc1 protein_coding Interval_137630 chr6 76639364 76640392 + 0 NA Intergenic Intergenic -142094 ENSMUSG00000072476.6 ENSMUSG00000072476 ENSMUST00000097218 Gm9008 protein_coding Interval_127806 chr5 107950843 107951440 + 0 NA intron (ENSMUSG00000029270.10, intron 1 of 4) protein_coding-intron (ENSMUSG00000029270.10, intron 1 of 4) 21857 ENSMUSG00000029270.10 ENSMUSG00000029270 ENSMUST00000153172 Dipk1a protein_coding Interval_61343 chr15 80954944 80955376 + 0 NA intron (ENSMUSG00000022407.10, intron 2 of 6) protein_coding-intron (ENSMUSG00000022407.10, intron 2 of 12) 2655 ENSMUSG00000058357.2 ENSMUSG00000058357 ENSMUST00000170777 Gm6612 processed_pseudogene Interval_52212 chr14 40668447 40669134 + 0 NA Intergenic Intergenic -78437 ENSMUSG00000114933.1 ENSMUSG00000114933 ENSMUST00000225171 Gm48040 processed_pseudogene Interval_61921 chr15 85257370 85258276 + 0 NA intron (ENSMUSG00000006369.14, intron 14 of 16) protein_coding-intron (ENSMUSG00000006369.14, intron 14 of 16) -5631 ENSMUSG00000006369.14 ENSMUSG00000006369 ENSMUST00000160798 Fbln1 protein_coding Interval_83949 chr19 5763545 5765076 + 0 NA intron (ENSMUSG00000024941.9, intron 8 of 16) protein_coding-intron (ENSMUSG00000024941.9, intron 8 of 16) 7042 ENSMUSG00000024941.9 ENSMUSG00000024941 ENSMUST00000237133 Scyl1 protein_coding Interval_116813 chr4 117405798 117406600 + 0 NA intron (ENSMUSG00000028677.19, intron 2 of 2) protein_coding-intron (ENSMUSG00000028677.19, intron 2 of 14) -39751 ENSMUSG00000086876.1 ENSMUSG00000086876 ENSMUST00000136115 Gm12828 antisense Interval_21188 chr10 127122894 127123701 + 0 NA Intergenic Intergenic -2182 ENSMUSG00000040462.13 ENSMUSG00000040462 ENSMUST00000218798 Os9 protein_coding Interval_155355 chr8 32214453 32215346 + 0 NA intron (ENSMUSG00000062991.9, intron 1 of 12) protein_coding-intron (ENSMUSG00000062991.9, intron 1 of 8) 28770 ENSMUSG00000089370.1 ENSMUSG00000089370 ENSMUST00000158745 Gm22140 snRNA Interval_23384 chr11 22079673 22080667 + 0 NA intron (ENSMUSG00000042302.14, intron 15 of 24) protein_coding-intron (ENSMUSG00000042302.14, intron 14 of 23) -78460 ENSMUSG00000005917.15 ENSMUSG00000005917 ENSMUST00000147486 Otx1 protein_coding Interval_30798 chr11 96526068 96527320 + 0 NA intron (ENSMUSG00000057058.16, intron 3 of 7) protein_coding-intron (ENSMUSG00000057058.16, intron 3 of 11) 42912 ENSMUSG00000057058.16 ENSMUSG00000057058 ENSMUST00000123814 Skap1 protein_coding Interval_107806 chr3 115631061 115631321 + 0 NA Intergenic Intergenic 83881 ENSMUSG00000045092.8 ENSMUSG00000045092 ENSMUST00000055676 S1pr1 protein_coding Interval_158921 chr8 87967082 87969231 + 0 NA Intergenic Intergenic -14294 ENSMUSG00000045333.15 ENSMUSG00000045333 ENSMUST00000173092 Zfp423 protein_coding Interval_141857 chr6 134960234 134962288 + 0 NA Intergenic Intergenic -20457 ENSMUSG00000090698.2 ENSMUSG00000090698 ENSMUST00000167323 Apold1 protein_coding Interval_16005 chr10 60066382 60066787 + 0 NA intron (ENSMUSG00000044475.14, intron 9 of 10) protein_coding-intron (ENSMUSG00000044475.14, intron 9 of 10) -39884 ENSMUSG00000058297.16 ENSMUSG00000058297 ENSMUST00000165024 Spock2 protein_coding Interval_174619 chrX 160153371 160153611 + 0 NA Intergenic Intergenic -24526 ENSMUSG00000031299.10 ENSMUSG00000031299 ENSMUST00000127535 Pdha1 protein_coding Interval_104063 chr3 57958563 57958823 + 0 NA promoter-TSS (ENSMUSG00000105003.1) lincRNA-promoter-TSS (ENSMUSG00000105003.1) -468 ENSMUSG00000105003.1 ENSMUSG00000105003 ENSMUST00000196091 Gm40055 lincRNA Interval_131975 chr5 141681860 141682598 + 0 NA intron (ENSMUSG00000039683.16, intron 4 of 9) protein_coding-intron (ENSMUSG00000039683.16, intron 4 of 44) -66227 ENSMUSG00000085540.1 ENSMUSG00000085540 ENSMUST00000150385 Gm16036 antisense Interval_23261 chr11 20979104 20979271 + 0 NA Intergenic Intergenic -41486 ENSMUSG00000096061.1 ENSMUSG00000096061 ENSMUST00000178821 Gm23681 miRNA Interval_119665 chr4 139085366 139086292 + 0 NA intron (ENSMUSG00000041120.6, intron 1 of 3) protein_coding-intron (ENSMUSG00000041120.6, intron 1 of 3) 6277 ENSMUSG00000041120.6 ENSMUSG00000041120 ENSMUST00000132900 Nbl1 protein_coding Interval_10577 chr1 171976552 171977678 + 0 NA Intergenic Intergenic 49596 ENSMUSG00000026556.15 ENSMUSG00000026556 ENSMUST00000138714 Vangl2 protein_coding Interval_76229 chr17 78232161 78233252 + 0 NA intron (ENSMUSG00000024074.8, intron 1 of 4) protein_coding-intron (ENSMUSG00000024074.8, intron 1 of 16) -5066 ENSMUSG00000024074.8 ENSMUSG00000024074 ENSMUST00000234439 Crim1 protein_coding Interval_94715 chr2 93641813 93643792 + 0 NA exon (ENSMUSG00000040310.12, exon 1 of 4) protein_coding-exon (ENSMUSG00000040310.12, exon 1 of 4) 414 ENSMUSG00000040310.12 ENSMUSG00000040310 ENSMUST00000111254 Alx4 protein_coding Interval_91931 chr2 51678638 51679298 + 0 NA intron (ENSMUSG00000085014.1, intron 2 of 6) lincRNA-intron (ENSMUSG00000085014.1, intron 2 of 6) 51457 ENSMUSG00000056115.2 ENSMUSG00000056115 ENSMUST00000070028 Tas2r134 protein_coding Interval_149125 chr7 94311769 94312073 + 0 NA intron (ENSMUSG00000108532.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000108532.1, intron 1 of 1) 60651 ENSMUSG00000108315.1 ENSMUSG00000108315 ENSMUST00000206678 Gm44601 lincRNA Interval_6801 chr1 119571299 119571699 + 0 NA intron (ENSMUSG00000026383.14, intron 4 of 7) protein_coding-intron (ENSMUSG00000026383.14, intron 18 of 24) 28806 ENSMUSG00000026383.14 ENSMUSG00000026383 ENSMUST00000187194 Epb41l5 protein_coding Interval_12521 chr1 194786347 194786614 + 0 NA intron (ENSMUSG00000026640.12, intron 4 of 4) protein_coding-intron (ENSMUSG00000026640.12, intron 13 of 31) 33607 ENSMUSG00000103597.1 ENSMUSG00000103597 ENSMUST00000191940 Gm19777 processed_pseudogene Interval_5592 chr1 90026598 90027218 + 0 NA Intergenic Intergenic 28052 ENSMUSG00000026301.16 ENSMUSG00000026301 ENSMUST00000186522 Iqca protein_coding Interval_102961 chr3 33808839 33809435 + 0 NA exon (ENSMUSG00000027677.17, exon 10 of 10) protein_coding-exon (ENSMUSG00000027677.17, exon 10 of 10) -8119 ENSMUSG00000105286.1 ENSMUSG00000105286 ENSMUST00000197317 Gm43140 antisense Interval_81453 chr18 60842869 60844298 + 0 NA intron (ENSMUSG00000024613.16, intron 2 of 4) protein_coding-intron (ENSMUSG00000024613.16, intron 2 of 22) 4863 ENSMUSG00000024613.16 ENSMUSG00000024613 ENSMUST00000177343 Tcof1 protein_coding Interval_92356 chr2 59225456 59225708 + 0 NA intron (ENSMUSG00000026991.20, intron 2 of 4) protein_coding-intron (ENSMUSG00000026991.20, intron 2 of 21) 63655 ENSMUSG00000026991.20 ENSMUSG00000026991 ENSMUST00000124127 Pkp4 protein_coding Interval_56445 chr14 118816659 118816926 + 0 NA intron (ENSMUSG00000022132.15, intron 1 of 3) protein_coding-intron (ENSMUSG00000022132.15, intron 1 of 4) 10239 ENSMUSG00000077661.1 ENSMUSG00000077661 ENSMUST00000104473 n-R5s51 rRNA Interval_95585 chr2 112497587 112498495 + 0 NA intron (ENSMUSG00000003604.14, intron 1 of 5) protein_coding-intron (ENSMUSG00000003604.14, intron 1 of 5) -2828 ENSMUSG00000080622.1 ENSMUSG00000080622 ENSMUST00000116972 Gm22676 snoRNA Interval_78432 chr18 12819257 12819473 + 0 NA intron (ENSMUSG00000044252.18, intron 1 of 11) protein_coding-intron (ENSMUSG00000044252.18, intron 17 of 27) 41840 ENSMUSG00000044252.18 ENSMUSG00000044252 ENSMUST00000142467 Osbpl1a protein_coding Interval_170981 chr9 113472883 113473069 + 0 NA Intergenic Intergenic 35379 ENSMUSG00000109890.2 ENSMUSG00000109890 ENSMUST00000209716 AU023762 lincRNA Interval_34667 chr12 8507008 8507444 + 0 NA Intergenic Intergenic -3975 ENSMUSG00000112276.1 ENSMUSG00000112276 ENSMUST00000218759 5033421B08Rik antisense Interval_18517 chr10 86848472 86848644 + 0 NA intron (ENSMUSG00000035459.18, intron 23 of 27) protein_coding-intron (ENSMUSG00000035459.18, intron 64 of 68) 9464 ENSMUSG00000089959.1 ENSMUSG00000089959 ENSMUST00000159445 Gm16268 antisense Interval_69756 chr16 96055081 96055651 + 0 NA intron (ENSMUSG00000022914.17, intron 5 of 13) protein_coding-intron (ENSMUSG00000022914.17, intron 13 of 41) 5698 ENSMUSG00000022914.17 ENSMUSG00000022914 ENSMUST00000113827 Brwd1 protein_coding Interval_68477 chr16 77788080 77788379 + 0 NA Intergenic Intergenic -58375 ENSMUSG00000091193.2 ENSMUSG00000091193 ENSMUST00000169531 Gm17333 lincRNA Interval_145029 chr7 29518181 29519439 + 0 NA promoter-TSS (ENSMUSG00000030583.16) protein_coding-promoter-TSS (ENSMUSG00000030583.16) -5733 ENSMUSG00000074224.3 ENSMUSG00000074224 ENSMUST00000098602 4932431P20Rik transcribed_unitary_pseudogene Interval_91503 chr2 39633090 39633520 + 0 NA Intergenic Intergenic 25666 ENSMUSG00000108203.1 ENSMUSG00000108203 ENSMUST00000205220 Gm43944 processed_pseudogene Interval_72013 chr17 27577434 27578107 + 0 NA Intergenic Intergenic -12104 ENSMUSG00000062753.14 ENSMUSG00000062753 ENSMUST00000138728 AI413582 protein_coding Interval_81902 chr18 65703880 65704471 + 0 NA intron (ENSMUSG00000046610.15, intron 1 of 12) protein_coding-intron (ENSMUSG00000046610.15, intron 1 of 14) 5891 ENSMUSG00000046610.15 ENSMUSG00000046610 ENSMUST00000134343 Oacyl protein_coding Interval_95997 chr2 119046443 119047962 + 0 NA promoter-TSS (ENSMUSG00000027326.13) protein_coding-promoter-TSS (ENSMUSG00000027326.13) 55 ENSMUSG00000027326.13 ENSMUSG00000027326 ENSMUST00000028802 Knl1 protein_coding Interval_55473 chr14 87758918 87759266 + 0 NA Intergenic Intergenic -121622 ENSMUSG00000115608.1 ENSMUSG00000115608 ENSMUST00000228615 Gm48922 processed_pseudogene Interval_173011 chrX 62287901 62288093 + 0 NA intron (ENSMUSG00000045330.8, intron 1 of 3) protein_coding-intron (ENSMUSG00000045330.8, intron 1 of 3) 4498 ENSMUSG00000045330.8 ENSMUSG00000045330 ENSMUST00000051414 4933402E13Rik protein_coding Interval_42942 chr13 21710032 21711445 + 0 NA Intergenic Intergenic 5405 ENSMUSG00000094338.1 ENSMUSG00000094338 ENSMUST00000091756 H2bc13 protein_coding Interval_26883 chr11 61266630 61267675 + 0 NA promoter-TSS (ENSMUSG00000010025.19) protein_coding-promoter-TSS (ENSMUSG00000010025.19) -16142 ENSMUSG00000010025.19 ENSMUSG00000010025 ENSMUST00000149298 Aldh3a2 protein_coding Interval_43650 chr13 34470450 34471269 + 0 NA Intergenic Intergenic 35652 ENSMUSG00000113998.1 ENSMUSG00000113998 ENSMUST00000223275 Gm40909 lincRNA Interval_126033 chr5 76974215 76975357 + 0 NA promoter-TSS (ENSMUSG00000036323.14) protein_coding-promoter-TSS (ENSMUSG00000036323.14) 65 ENSMUSG00000036323.14 ENSMUSG00000036323 ENSMUST00000144741 Srp72 protein_coding Interval_69669 chr16 95129016 95129335 + 0 NA Intergenic Intergenic 26771 ENSMUSG00000116667.1 ENSMUSG00000116667 ENSMUST00000232306 Gm49641 processed_pseudogene Interval_147826 chr7 73847730 73848302 + 0 NA Intergenic Intergenic 28426 ENSMUSG00000105381.1 ENSMUSG00000105381 ENSMUST00000199151 Mir7234 miRNA Interval_44740 chr13 48146988 48147552 + 0 NA intron (ENSMUSG00000114457.1, intron 2 of 3) antisense-intron (ENSMUSG00000097622.2, intron 1 of 2) 89981 ENSMUSG00000114457.1 ENSMUSG00000114457 ENSMUST00000225626 Gm36346 lincRNA Interval_95320 chr2 106497893 106499458 + 0 NA intron (ENSMUSG00000087226.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000087226.1, intron 1 of 2) 24428 ENSMUSG00000087226.1 ENSMUSG00000087226 ENSMUST00000130634 Gm14015 lincRNA Interval_59919 chr15 61978370 61979401 + 0 NA TTS (ENSMUSG00000103610.1) TEC-TTS (ENSMUSG00000103610.1) 4417 ENSMUSG00000103610.1 ENSMUSG00000103610 ENSMUST00000192740 Gm37947 TEC Interval_132857 chr5 148352376 148352631 + 0 NA intron (ENSMUSG00000041313.14, intron 2 of 2) protein_coding-intron (ENSMUSG00000041313.14, intron 2 of 12) 47288 ENSMUSG00000041313.14 ENSMUSG00000041313 ENSMUST00000201348 Slc7a1 protein_coding Interval_77258 chr17 87624781 87624987 + 0 NA Intergenic Intergenic -11095 ENSMUSG00000045394.9 ENSMUSG00000045394 ENSMUST00000234623 Epcam protein_coding Interval_105668 chr3 88476355 88476697 + 0 NA Intergenic Intergenic 1942 ENSMUSG00000103304.1 ENSMUSG00000103304 ENSMUST00000193850 Gm5979 unprocessed_pseudogene Interval_105111 chr3 81469379 81469666 + 0 NA Intergenic Intergenic -63950 ENSMUSG00000102223.1 ENSMUSG00000102223 ENSMUST00000193327 Gm37300 processed_pseudogene Interval_62007 chr15 85851949 85852767 + 0 NA intron (ENSMUSG00000035944.17, intron 10 of 13) protein_coding-intron (ENSMUSG00000035944.17, intron 9 of 12) -7588 ENSMUSG00000022385.11 ENSMUSG00000022385 ENSMUST00000231074 Gtse1 protein_coding Interval_125390 chr5 66624020 66624346 + 0 NA Intergenic Intergenic -28613 ENSMUSG00000106706.1 ENSMUSG00000106706 ENSMUST00000201865 C530043K16Rik TEC Interval_99576 chr2 163317036 163318022 + 0 NA intron (ENSMUSG00000074607.11, intron 5 of 8) protein_coding-intron (ENSMUSG00000074607.11, intron 5 of 8) 80464 ENSMUSG00000017817.11 ENSMUSG00000017817 ENSMUST00000109425 Jph2 protein_coding Interval_119974 chr4 141181004 141181562 + 0 NA intron (ENSMUSG00000028920.9, intron 2 of 3) protein_coding-intron (ENSMUSG00000028920.9, intron 4 of 9) 33361 ENSMUSG00000028920.9 ENSMUSG00000028920 ENSMUST00000146768 Fbxo42 protein_coding Interval_4917 chr1 82476137 82477271 + 0 NA intron (ENSMUSG00000067158.9, intron 37 of 47) protein_coding-intron (ENSMUSG00000067158.9, intron 37 of 47) -73958 ENSMUSG00000100786.1 ENSMUSG00000100786 ENSMUST00000187929 Gm28940 antisense Interval_117083 chr4 119421675 119423421 + 0 NA promoter-TSS (ENSMUSG00000028636.14) protein_coding-promoter-TSS (ENSMUSG00000028636.14) -190 ENSMUSG00000028636.14 ENSMUSG00000028636 ENSMUST00000030385 Ppcs protein_coding Interval_3185 chr1 54566111 54566554 + 0 NA promoter-TSS (ENSMUSG00000101130.1) processed_pseudogene-promoter-TSS (ENSMUSG00000101130.1) -371 ENSMUSG00000101130.1 ENSMUSG00000101130 ENSMUST00000185933 Gm19637 processed_pseudogene Interval_119770 chr4 139843072 139844209 + 0 NA Intergenic Intergenic -10633 ENSMUSG00000028736.13 ENSMUSG00000028736 ENSMUST00000174681 Pax7 protein_coding Interval_48428 chr13 98949592 98950130 + 0 NA Intergenic Intergenic -3945 ENSMUSG00000114569.1 ENSMUSG00000114569 ENSMUST00000223733 Gm35215 lincRNA Interval_16194 chr10 61355715 61356501 + 0 NA intron (ENSMUSG00000020092.9, intron 1 of 19) protein_coding-intron (ENSMUSG00000020092.9, intron 1 of 19) -3558 ENSMUSG00000112256.1 ENSMUSG00000112256 ENSMUST00000219025 Gm48077 TEC Interval_150045 chr7 105381112 105381524 + 0 NA intron (ENSMUSG00000044465.19, intron 9 of 11) protein_coding-intron (ENSMUSG00000044465.19, intron 10 of 11) 3125 ENSMUSG00000044465.19 ENSMUSG00000044465 ENSMUST00000210341 Fam160a2 protein_coding Interval_34591 chr12 6246653 6246918 + 0 NA Intergenic Intergenic 35551 ENSMUSG00000112591.1 ENSMUSG00000112591 ENSMUST00000219548 Gm4927 processed_pseudogene Interval_161194 chr8 118443480 118444258 + 0 NA intron (ENSMUSG00000031841.19, intron 2 of 8) protein_coding-intron (ENSMUSG00000031841.19, intron 1 of 13) -17270 ENSMUSG00000064801.1 ENSMUSG00000064801 ENSMUST00000082867 Gm24035 snRNA Interval_133474 chr6 5442438 5443648 + 0 NA Intergenic Intergenic 52616 ENSMUSG00000042607.15 ENSMUSG00000042607 ENSMUST00000183358 Asb4 protein_coding Interval_114136 chr4 64016934 64018187 + 0 NA exon (ENSMUSG00000028364.15, exon 2 of 25) protein_coding-exon (ENSMUSG00000028364.15, exon 2 of 25) 29455 ENSMUSG00000028364.15 ENSMUSG00000028364 ENSMUST00000107371 Tnc protein_coding Interval_40363 chr12 104415842 104416028 + 0 NA Intergenic Intergenic 3465 ENSMUSG00000077398.1 ENSMUSG00000077398 ENSMUST00000104210 Gm24334 snoRNA Interval_94130 chr2 84578702 84580063 + 0 NA intron (ENSMUSG00000118521.1, intron 2 of 2) processed_pseudogene-intron (ENSMUSG00000118521.1, intron 2 of 2) 13458 ENSMUSG00000118521.1 ENSMUSG00000118521 ENSMUST00000238924 AL928616.1 processed_pseudogene Interval_129729 chr5 122001594 122001838 + 0 NA intron (ENSMUSG00000042589.18, intron 1 of 6) protein_coding-intron (ENSMUSG00000042589.18, intron 2 of 22) -23614 ENSMUSG00000105795.1 ENSMUSG00000105795 ENSMUST00000198001 Gm3970 antisense Interval_12716 chr10 4468637 4469824 + 0 NA Intergenic Intergenic -15004 ENSMUSG00000065371.1 ENSMUSG00000065371 ENSMUST00000083437 Gm22739 snRNA Interval_116755 chr4 117109287 117110937 + 0 NA promoter-TSS (ENSMUSG00000028681.11) protein_coding-promoter-TSS (ENSMUSG00000028681.11) 5192 ENSMUSG00000028681.11 ENSMUSG00000028681 ENSMUST00000123226 Ptch2 protein_coding Interval_7876 chr1 134325753 134327518 + 0 NA intron (ENSMUSG00000026458.13, intron 7 of 27) protein_coding-intron (ENSMUSG00000026458.13, intron 7 of 28) -21827 ENSMUSG00000026458.13 ENSMUSG00000026458 ENSMUST00000186553 Ppfia4 protein_coding Interval_141976 chr6 136284560 136284777 + 0 NA Intergenic Intergenic 3441 ENSMUSG00000087878.1 ENSMUSG00000087878 ENSMUST00000157253 Gm26105 snRNA Interval_136336 chr6 53217024 53217448 + 0 NA Intergenic Intergenic -3928 ENSMUSG00000107935.1 ENSMUSG00000107935 ENSMUST00000205210 Gm4872 lincRNA Interval_69067 chr16 90405441 90406242 + 0 NA intron (ENSMUSG00000053414.8, intron 1 of 10) protein_coding-intron (ENSMUSG00000053414.8, intron 1 of 10) 5297 ENSMUSG00000053414.8 ENSMUSG00000053414 ENSMUST00000231603 Hunk protein_coding Interval_39291 chr12 86496738 86497604 + 0 NA intron (ENSMUSG00000021255.17, intron 2 of 5) protein_coding-intron (ENSMUSG00000021255.17, intron 3 of 6) 27054 ENSMUSG00000021255.17 ENSMUSG00000021255 ENSMUST00000136464 Esrrb protein_coding Interval_126220 chr5 82819751 82819976 + 0 NA Intergenic Intergenic 16098 ENSMUSG00000089162.1 ENSMUSG00000089162 ENSMUST00000158537 Gm24129 snRNA Interval_127640 chr5 106031492 106032884 + 0 NA Intergenic Intergenic 40245 ENSMUSG00000095052.1 ENSMUSG00000095052 ENSMUST00000180111 Gm25672 snRNA Interval_70242 chr17 7196605 7196773 + 0 NA intron (ENSMUSG00000023809.10, intron 1 of 20) protein_coding-intron (ENSMUSG00000023809.10, intron 1 of 20) 26562 ENSMUSG00000023809.10 ENSMUSG00000023809 ENSMUST00000231530 Rps6ka2 protein_coding Interval_52552 chr14 47438940 47439514 + 0 NA Intergenic Intergenic 16810 ENSMUSG00000115617.1 ENSMUSG00000115617 ENSMUST00000226648 Gm48975 lincRNA Interval_20573 chr10 119132104 119132359 + 0 NA Intergenic Intergenic 20607 ENSMUSG00000112609.1 ENSMUSG00000112609 ENSMUST00000220151 Gm47480 lincRNA Interval_42203 chr13 9866337 9867043 + 0 NA Intergenic Intergenic -26220 ENSMUSG00000113146.1 ENSMUSG00000113146 ENSMUST00000221304 Gm47406 processed_pseudogene Interval_75155 chr17 64078570 64078765 + 0 NA intron (ENSMUSG00000000127.15, intron 14 of 17) protein_coding-intron (ENSMUSG00000000127.15, intron 14 of 17) -214876 ENSMUSG00000045506.3 ENSMUSG00000045506 ENSMUST00000050753 A930002H24Rik protein_coding Interval_170760 chr9 110570682 110570919 + 0 NA TTS (ENSMUSG00000044791.16) protein_coding-TTS (ENSMUSG00000044791.16) -2822 ENSMUSG00000044791.16 ENSMUSG00000044791 ENSMUST00000197260 Setd2 protein_coding Interval_116051 chr4 107252960 107254334 + 0 NA promoter-TSS (ENSMUSG00000028617.10) protein_coding-promoter-TSS (ENSMUSG00000028617.10) -251 ENSMUSG00000063172.13 ENSMUSG00000063172 ENSMUST00000137911 Hspb11 protein_coding Interval_16611 chr10 65574937 65575639 + 0 NA Intergenic Intergenic 40634 ENSMUSG00000112341.1 ENSMUSG00000112341 ENSMUST00000219802 Gm4796 processed_pseudogene Interval_81251 chr18 56756266 56756788 + 0 NA Intergenic Intergenic -13190 ENSMUSG00000087597.1 ENSMUSG00000087597 ENSMUST00000128240 Gm15345 antisense Interval_27314 chr11 66026781 66026982 + 0 NA intron (ENSMUSG00000056752.16, intron 34 of 68) protein_coding-intron (ENSMUSG00000056752.16, intron 34 of 68) -21686 ENSMUSG00000056752.16 ENSMUSG00000056752 ENSMUST00000142836 Dnah9 protein_coding Interval_114019 chr4 62518550 62520313 + 0 NA intron (ENSMUSG00000028393.10, intron 1 of 10) protein_coding-intron (ENSMUSG00000028393.10, intron 1 of 11) 450 ENSMUSG00000028393.10 ENSMUSG00000028393 ENSMUST00000030090 Alad protein_coding Interval_160950 chr8 116102322 116102649 + 0 NA Intergenic Intergenic 84884 ENSMUSG00000110476.1 ENSMUSG00000110476 ENSMUST00000212419 4930422C21Rik lincRNA Interval_66979 chr16 38975860 38976853 + 0 NA intron (ENSMUSG00000022790.14, intron 1 of 6) protein_coding-intron (ENSMUSG00000022790.14, intron 1 of 6) 49147 ENSMUSG00000089607.1 ENSMUSG00000089607 ENSMUST00000158982 Gm22500 snRNA Interval_136377 chr6 53958005 53958719 + 0 NA intron (ENSMUSG00000052955.5, intron 3 of 12) protein_coding-intron (ENSMUSG00000052955.5, intron 3 of 12) 20300 ENSMUSG00000052955.5 ENSMUSG00000052955 ENSMUST00000166545 Cpvl protein_coding Interval_137141 chr6 68030688 68031154 + 0 NA Intergenic Intergenic -5891 ENSMUSG00000076514.3 ENSMUSG00000076514 ENSMUST00000103315 Igkv17-121 IG_V_gene Interval_93435 chr2 73046679 73047815 + 0 NA Intergenic Intergenic -60531 ENSMUSG00000079286.1 ENSMUSG00000079286 ENSMUST00000112062 Gm11084 protein_coding Interval_57011 chr15 4042939 4043524 + 0 NA intron (ENSMUSG00000022186.14, intron 3 of 15) protein_coding-intron (ENSMUSG00000022186.14, intron 3 of 16) 16547 ENSMUSG00000022186.14 ENSMUSG00000022186 ENSMUST00000133130 Oxct1 protein_coding Interval_90460 chr2 30600652 30601109 + 0 NA intron (ENSMUSG00000047363.4, intron 1 of 1) protein_coding-intron (ENSMUSG00000047363.4, intron 1 of 1) -4337 ENSMUSG00000047363.4 ENSMUSG00000047363 ENSMUST00000129719 Cstad protein_coding Interval_135143 chr6 36755048 36755811 + 0 NA intron (ENSMUSG00000029838.11, intron 1 of 3) protein_coding-intron (ENSMUSG00000029838.11, intron 1 of 4) 54750 ENSMUSG00000029838.11 ENSMUSG00000029838 ENSMUST00000201321 Ptn protein_coding Interval_41815 chr12 119837179 119837965 + 0 NA Intergenic Intergenic 39070 ENSMUSG00000114137.1 ENSMUSG00000114137 ENSMUST00000222158 Gm48685 unprocessed_pseudogene Interval_145846 chr7 40310519 40311025 + 0 NA Intergenic Intergenic 48067 ENSMUSG00000101153.1 ENSMUSG00000101153 ENSMUST00000190294 4933404I11Rik lincRNA Interval_13691 chr10 21074684 21074915 + 0 NA TTS (ENSMUSG00000019986.17) protein_coding-TTS (ENSMUSG00000019986.17) 4954 ENSMUSG00000019986.17 ENSMUSG00000019986 ENSMUST00000215543 Ahi1 protein_coding Interval_13804 chr10 22702147 22702446 + 0 NA exon (ENSMUSG00000037490.5, exon 5 of 5) protein_coding-exon (ENSMUSG00000037490.5, exon 5 of 5) 4089 ENSMUSG00000071359.13 ENSMUSG00000071359 ENSMUST00000138022 Tbpl1 protein_coding Interval_125754 chr5 73905385 73905599 + 0 NA Intergenic Intergenic -7404 ENSMUSG00000107027.1 ENSMUSG00000107027 ENSMUST00000202487 1700019F05Rik lincRNA Interval_61317 chr15 80814789 80815211 + 0 NA intron (ENSMUSG00000047888.10, intron 1 of 17) protein_coding-intron (ENSMUSG00000047888.10, intron 4 of 24) 102729 ENSMUSG00000116480.1 ENSMUSG00000116480 ENSMUST00000230620 Gm49512 sense_intronic Interval_64145 chr16 8708124 8709703 + 0 NA exon (ENSMUSG00000022710.17, exon 5 of 31) protein_coding-exon (ENSMUSG00000022710.17, exon 5 of 31) -10381 ENSMUSG00000022710.17 ENSMUSG00000022710 ENSMUST00000159509 Usp7 protein_coding Interval_111505 chr4 22262618 22262822 + 0 NA Intergenic Intergenic -13113 ENSMUSG00000083376.1 ENSMUSG00000083376 ENSMUST00000121463 Gm11882 processed_pseudogene Interval_174751 chrX 165327229 165328175 + 0 NA promoter-TSS (ENSMUSG00000018589.8) protein_coding-promoter-TSS (ENSMUSG00000018589.8) -309 ENSMUSG00000018589.8 ENSMUSG00000018589 ENSMUST00000058787 Glra2 protein_coding Interval_94953 chr2 102137921 102138668 + 0 NA promoter-TSS (ENSMUSG00000048058.17) protein_coding-promoter-TSS (ENSMUSG00000048058.17) -175 ENSMUSG00000048058.17 ENSMUSG00000048058 ENSMUST00000127888 Ldlrad3 protein_coding Interval_31616 chr11 101747488 101748303 + 0 NA intron (ENSMUSG00000034931.15, intron 9 of 20) protein_coding-intron (ENSMUSG00000034931.15, intron 11 of 22) 14866 ENSMUSG00000034931.15 ENSMUSG00000034931 ENSMUST00000141461 Dhx8 protein_coding Interval_123273 chr5 31054222 31055440 + 0 NA promoter-TSS (ENSMUSG00000013629.16) protein_coding-promoter-TSS (ENSMUSG00000013629.16) 6510 ENSMUSG00000013622.15 ENSMUSG00000013622 ENSMUST00000200800 Atraid protein_coding Interval_171968 chr9 123043946 123044427 + 0 NA intron (ENSMUSG00000025787.6, intron 3 of 7) protein_coding-intron (ENSMUSG00000025787.6, intron 3 of 13) 9460 ENSMUSG00000025787.6 ENSMUSG00000025787 ENSMUST00000214552 Tgm4 protein_coding Interval_115914 chr4 106235377 106235696 + 0 NA Intergenic Intergenic -5680 ENSMUSG00000086249.1 ENSMUSG00000086249 ENSMUST00000140196 Gm12724 processed_transcript Interval_153312 chr7 143539359 143539727 + 0 NA intron (ENSMUSG00000059119.9, intron 3 of 14) protein_coding-intron (ENSMUSG00000059119.9, intron 3 of 15) -8023 ENSMUSG00000065118.1 ENSMUSG00000065118 ENSMUST00000083184 Gm23297 snoRNA Interval_8574 chr1 143160371 143161044 + 0 NA Intergenic Intergenic -66091 ENSMUSG00000101795.2 ENSMUSG00000101795 ENSMUST00000185806 Gm5835 processed_pseudogene Interval_72175 chr17 28424240 28424449 + 0 NA TTS (ENSMUSG00000117313.1) sense_intronic-TTS (ENSMUSG00000117313.1) 2086 ENSMUSG00000117313.1 ENSMUSG00000117313 ENSMUST00000233201 Gm49838 sense_intronic Interval_130870 chr5 132824894 132825160 + 0 NA Intergenic Intergenic 23349 ENSMUSG00000088123.1 ENSMUSG00000088123 ENSMUST00000157498 Gm25722 misc_RNA Interval_56734 chr14 121731135 121733063 + 0 NA intron (ENSMUSG00000025558.19, intron 1 of 52) protein_coding-intron (ENSMUSG00000025558.19, intron 1 of 52) 6762 ENSMUSG00000025558.19 ENSMUSG00000025558 ENSMUST00000238406 Dock9 protein_coding Interval_56977 chr14 124597832 124598566 + 0 NA intron (ENSMUSG00000025551.13, intron 1 of 4) protein_coding-intron (ENSMUSG00000025551.13, intron 1 of 4) 9144 ENSMUSG00000108568.1 ENSMUSG00000108568 ENSMUST00000205749 Olfr277-ps1 unprocessed_pseudogene Interval_140696 chr6 120626945 120627932 + 0 NA Intergenic Intergenic -47262 ENSMUSG00000107580.1 ENSMUSG00000107580 ENSMUST00000204159 Gm44124 TEC Interval_94536 chr2 91994703 91995685 + 0 NA intron (ENSMUSG00000027230.9, intron 3 of 11) protein_coding-intron (ENSMUSG00000027230.9, intron 3 of 11) 29308 ENSMUSG00000027230.9 ENSMUSG00000027230 ENSMUST00000028663 Creb3l1 protein_coding Interval_159887 chr8 104682014 104682472 + 0 NA promoter-TSS (ENSMUSG00000110568.1) transcribed_unprocessed_pseudogene-promoter-TSS (ENSMUSG00000110568.1) -2548 ENSMUSG00000110568.1 ENSMUSG00000110568 ENSMUST00000212975 Gm7208 transcribed_unprocessed_pseudogene Interval_35450 chr12 21898355 21899919 + 0 NA Intergenic Intergenic -122430 ENSMUSG00000091105.1 ENSMUSG00000091105 ENSMUST00000164169 Mrto4-ps2 processed_pseudogene Interval_77877 chr18 4981867 4982997 + 0 NA intron (ENSMUSG00000024236.18, intron 3 of 35) protein_coding-intron (ENSMUSG00000024236.18, intron 1 of 37) -52734 ENSMUSG00000024236.18 ENSMUSG00000024236 ENSMUST00000129543 Svil protein_coding Interval_3031 chr1 52353638 52354720 + 0 NA Intergenic Intergenic -65084 ENSMUSG00000099648.1 ENSMUSG00000099648 ENSMUST00000185256 Gm5975 processed_pseudogene Interval_43528 chr13 32770152 32770424 + 0 NA intron (ENSMUSG00000044951.17, intron 2 of 2) protein_coding-intron (ENSMUSG00000044951.17, intron 1 of 11) 12086 ENSMUSG00000098788.1 ENSMUSG00000098788 ENSMUST00000183530 Gm27342 snRNA Interval_66998 chr16 39194902 39195205 + 0 NA Intergenic Intergenic -6147 ENSMUSG00000116965.1 ENSMUSG00000116965 ENSMUST00000231748 Gm36742 lincRNA Interval_160596 chr8 110928370 110929020 + 0 NA intron (ENSMUSG00000031749.12, intron 2 of 2) protein_coding-intron (ENSMUSG00000031749.12, intron 1 of 6) -3226 ENSMUSG00000031749.12 ENSMUSG00000031749 ENSMUST00000138332 St3gal2 protein_coding Interval_170775 chr9 110681095 110682416 + 0 NA intron (ENSMUSG00000019659.8, intron 1 of 5) protein_coding-intron (ENSMUSG00000019659.8, intron 1 of 6) -6801 ENSMUSG00000104945.1 ENSMUSG00000104945 ENSMUST00000197421 Gm35715 antisense Interval_142610 chr6 144256378 144257084 + 0 NA intron (ENSMUSG00000041540.16, intron 4 of 6) protein_coding-intron (ENSMUSG00000041540.16, intron 4 of 13) -47163 ENSMUSG00000041540.16 ENSMUSG00000041540 ENSMUST00000150087 Sox5 protein_coding Interval_7667 chr1 132920746 132921780 + 0 NA intron (ENSMUSG00000026443.3, intron 1 of 1) protein_coding-intron (ENSMUSG00000026443.3, intron 1 of 1) 2481 ENSMUSG00000106377.1 ENSMUSG00000106377 ENSMUST00000196792 Gm44300 miRNA Interval_118224 chr4 129618659 129619688 + 0 NA promoter-TSS (ENSMUSG00000040795.12) protein_coding-promoter-TSS (ENSMUSG00000040795.12) -93 ENSMUSG00000040795.12 ENSMUSG00000040795 ENSMUST00000146378 Iqcc protein_coding Interval_10217 chr1 167259436 167260369 + 0 NA intron (ENSMUSG00000026558.13, intron 1 of 5) protein_coding-intron (ENSMUSG00000026558.13, intron 1 of 6) 17445 ENSMUSG00000103139.1 ENSMUSG00000103139 ENSMUST00000193076 Gm37982 antisense Interval_2784 chr1 44922593 44923881 + 0 NA TTS (ENSMUSG00000101251.1) processed_pseudogene-TTS (ENSMUSG00000101251.1) 1656 ENSMUSG00000101251.1 ENSMUSG00000101251 ENSMUST00000188283 Gm3496 processed_pseudogene Interval_95694 chr2 114260081 114261060 + 0 NA Intergenic Intergenic -9541 ENSMUSG00000084620.1 ENSMUSG00000084620 ENSMUST00000122671 Gm25103 misc_RNA Interval_22099 chr11 6336729 6337411 + 0 NA intron (ENSMUSG00000020456.17, intron 5 of 22) protein_coding-intron (ENSMUSG00000020456.17, intron 5 of 22) 45085 ENSMUSG00000020456.17 ENSMUSG00000020456 ENSMUST00000081894 Ogdh protein_coding Interval_137555 chr6 73181407 73183006 + 0 NA intron (ENSMUSG00000052861.13, intron 10 of 75) protein_coding-intron (ENSMUSG00000052861.13, intron 11 of 76) 30457 ENSMUSG00000052861.13 ENSMUSG00000052861 ENSMUST00000114038 Dnah6 protein_coding Interval_77891 chr18 5064219 5064545 + 0 NA promoter-TSS (ENSMUSG00000024236.18) protein_coding-promoter-TSS (ENSMUSG00000024236.18) 29216 ENSMUSG00000024236.18 ENSMUSG00000024236 ENSMUST00000129543 Svil protein_coding Interval_145581 chr7 35711762 35712096 + 0 NA exon (ENSMUSG00000043671.14, exon 12 of 19) protein_coding-exon (ENSMUSG00000043671.14, exon 12 of 19) -3364 ENSMUSG00000043671.14 ENSMUSG00000043671 ENSMUST00000124116 Dpy19l3 protein_coding Interval_149319 chr7 97417093 97417906 + 0 NA promoter-TSS (ENSMUSG00000035686.8) protein_coding-promoter-TSS (ENSMUSG00000035686.8) 20 ENSMUSG00000035686.8 ENSMUSG00000035686 ENSMUST00000206613 Thrsp protein_coding Interval_83050 chr18 80815565 80815804 + 0 NA intron (ENSMUSG00000024566.10, intron 10 of 27) protein_coding-intron (ENSMUSG00000024566.10, intron 11 of 29) -6563 ENSMUSG00000114891.1 ENSMUSG00000114891 ENSMUST00000225900 Gm47272 antisense Interval_159513 chr8 95184081 95185693 + 0 NA intron (ENSMUSG00000031788.14, intron 1 of 4) protein_coding-intron (ENSMUSG00000031788.14, intron 1 of 4) 46577 ENSMUSG00000110475.1 ENSMUSG00000110475 ENSMUST00000212925 Gm31036 antisense Interval_70349 chr17 8856347 8857204 + 0 NA intron (ENSMUSG00000023868.17, intron 1 of 21) protein_coding-intron (ENSMUSG00000023868.17, intron 1 of 21) -90848 ENSMUSG00000083386.1 ENSMUSG00000083386 ENSMUST00000117823 Gm15426 processed_pseudogene Interval_78531 chr18 14503011 14503428 + 0 NA Intergenic Intergenic 11214 ENSMUSG00000117607.1 ENSMUSG00000117607 ENSMUST00000234589 Gm50098 processed_pseudogene Interval_41288 chr12 112501184 112501924 + 0 NA TTS (ENSMUSG00000054013.6) protein_coding-TTS (ENSMUSG00000054013.6) 12080 ENSMUSG00000043122.7 ENSMUSG00000043122 ENSMUST00000223266 A530016L24Rik protein_coding Interval_113253 chr4 52425940 52426163 + 0 NA Intergenic Intergenic 12914 ENSMUSG00000085763.1 ENSMUSG00000085763 ENSMUST00000141473 Smc2os antisense Interval_73936 chr17 45566355 45567994 + 0 NA TTS (ENSMUSG00000023944.14) protein_coding-TTS (ENSMUSG00000023944.14) 3150 ENSMUSG00000037089.11 ENSMUSG00000037089 ENSMUST00000224341 Slc35b2 protein_coding Interval_135575 chr6 40625731 40626747 + 0 NA Intergenic Intergenic -12929 ENSMUSG00000058250.2 ENSMUSG00000058250 ENSMUST00000076565 Tas2r138 protein_coding Interval_144050 chr7 19196219 19196898 + 0 NA exon (ENSMUSG00000040811.15, exon 11 of 19) protein_coding-exon (ENSMUSG00000040811.15, exon 11 of 19) 15093 ENSMUSG00000065543.1 ENSMUSG00000065543 ENSMUST00000083609 Mir330 miRNA Interval_151300 chr7 120823155 120823955 + 0 NA intron (ENSMUSG00000109392.1, intron 9 of 11) protein_coding-intron (ENSMUSG00000109392.1, intron 9 of 11) 11190 ENSMUSG00000109392.1 ENSMUSG00000109392 ENSMUST00000208668 Gm5737 protein_coding Interval_7746 chr1 133390341 133390585 + 0 NA intron (ENSMUSG00000070643.11, intron 4 of 13) protein_coding-intron (ENSMUSG00000070643.11, intron 3 of 12) 24699 ENSMUSG00000070644.13 ENSMUSG00000070644 ENSMUST00000131450 Etnk2 protein_coding Interval_125839 chr5 74880791 74881049 + 0 NA Intergenic Intergenic -2415 ENSMUSG00000106806.1 ENSMUSG00000106806 ENSMUST00000202480 Gm17906 processed_pseudogene Interval_66382 chr16 33498885 33500182 + 0 NA TTS (ENSMUSG00000022811.17) protein_coding-TTS (ENSMUSG00000022811.17) -116857 ENSMUSG00000035506.16 ENSMUSG00000035506 ENSMUST00000149291 Slc12a8 protein_coding Interval_95631 chr2 113197410 113197657 + 0 NA intron (ENSMUSG00000057378.15, intron 1 of 103) protein_coding-intron (ENSMUSG00000057378.15, intron 1 of 102) -88199 ENSMUSG00000041255.2 ENSMUSG00000041255 ENSMUST00000040856 Tmco5b protein_coding Interval_134920 chr6 33609415 33609629 + 0 NA intron (ENSMUSG00000029763.17, intron 10 of 12) protein_coding-intron (ENSMUSG00000029763.17, intron 10 of 17) 82632 ENSMUSG00000107103.1 ENSMUSG00000107103 ENSMUST00000202529 Gm43164 TEC Interval_69543 chr16 94142934 94143933 + 0 NA intron (ENSMUSG00000040820.16, intron 2 of 6) protein_coding-intron (ENSMUSG00000040820.16, intron 5 of 9) 25978 ENSMUSG00000076304.1 ENSMUSG00000076304 ENSMUST00000102349 Gm23062 miRNA Interval_159931 chr8 105258892 105260129 + 0 NA TTS (ENSMUSG00000031887.13) protein_coding-TTS (ENSMUSG00000031887.13) -4359 ENSMUSG00000069920.10 ENSMUSG00000069920 ENSMUST00000161745 B3gnt9 protein_coding Interval_27829 chr11 70265429 70265747 + 0 NA Intergenic Intergenic -10247 ENSMUSG00000000320.10 ENSMUSG00000000320 ENSMUST00000108574 Alox12 protein_coding Interval_145431 chr7 34717210 34717431 + 0 NA intron (ENSMUSG00000060402.8, intron 2 of 2) protein_coding-intron (ENSMUSG00000060402.8, intron 2 of 3) 36492 ENSMUSG00000060402.8 ENSMUSG00000060402 ENSMUST00000205390 Chst8 protein_coding Interval_75758 chr17 71072145 71072612 + 0 NA intron (ENSMUSG00000024049.15, intron 14 of 17) protein_coding-intron (ENSMUSG00000024049.15, intron 14 of 36) 69745 ENSMUSG00000024049.15 ENSMUSG00000024049 ENSMUST00000233790 Myom1 protein_coding Interval_76749 chr17 83814071 83814538 + 0 NA intron (ENSMUSG00000055817.18, intron 5 of 5) protein_coding-intron (ENSMUSG00000055817.18, intron 16 of 16) 32485 ENSMUSG00000000673.9 ENSMUSG00000000673 ENSMUST00000234312 Haao protein_coding Interval_128449 chr5 113372493 113373954 + 0 NA Intergenic Intergenic 15929 ENSMUSG00000053873.1 ENSMUSG00000053873 ENSMUST00000066573 Aym1 protein_coding Interval_32874 chr11 112659849 112660188 + 0 NA Intergenic Intergenic 51322 ENSMUSG00000041674.16 ENSMUSG00000041674 ENSMUST00000148724 BC006965 processed_transcript Interval_23819 chr11 26553573 26553878 + 0 NA intron (ENSMUSG00000064090.14, intron 2 of 4) protein_coding-intron (ENSMUSG00000064090.14, intron 2 of 12) -39501 ENSMUSG00000068314.5 ENSMUSG00000068314 ENSMUST00000089614 Gm6899 TEC Interval_99640 chr2 163850079 163850397 + 0 NA Intergenic Intergenic -3495 ENSMUSG00000035238.4 ENSMUSG00000035238 ENSMUST00000109396 Kcnk15 protein_coding Interval_146147 chr7 44350958 44353539 + 0 NA TTS (ENSMUSG00000038738.15) protein_coding-TTS (ENSMUSG00000038738.15) 10113 ENSMUSG00000038738.15 ENSMUSG00000038738 ENSMUST00000127164 Shank1 protein_coding Interval_41520 chr12 115790779 115791204 + 0 NA promoter-TSS (ENSMUSG00000106599.1) IG_V_pseudogene-promoter-TSS (ENSMUSG00000106599.1) 36 ENSMUSG00000106599.1 ENSMUSG00000106599 ENSMUST00000197435 Ighv1-73 IG_V_pseudogene Interval_149816 chr7 101799666 101800219 + 0 NA Intergenic Intergenic 9406 ENSMUSG00000110360.1 ENSMUSG00000110360 ENSMUST00000210465 Gm45380 processed_pseudogene Interval_86073 chr19 36256153 36257098 + 0 NA TTS (ENSMUSG00000118032.1) lincRNA-TTS (ENSMUSG00000118032.1) 4898 ENSMUSG00000118032.1 ENSMUSG00000118032 ENSMUST00000236788 Gm50147 lincRNA Interval_81478 chr18 61011889 61015557 + 0 NA intron (ENSMUSG00000052026.8, intron 1 of 2) protein_coding-intron (ENSMUSG00000052026.8, intron 1 of 13) 483 ENSMUSG00000052026.8 ENSMUSG00000052026 ENSMUST00000236893 Slc6a7 protein_coding Interval_58693 chr15 37165891 37166599 + 0 NA Intergenic Intergenic 6159 ENSMUSG00000115848.1 ENSMUSG00000115848 ENSMUST00000227699 Gm9509 processed_pseudogene Interval_67520 chr16 50182609 50183489 + 0 NA Intergenic Intergenic 71976 ENSMUSG00000098028.1 ENSMUSG00000098028 ENSMUST00000182962 Gm8824 processed_pseudogene Interval_32600 chr11 109045120 109045497 + 0 NA Intergenic Intergenic 21782 ENSMUSG00000064691.1 ENSMUSG00000064691 ENSMUST00000082757 Gm24149 snRNA Interval_54827 chr14 75549364 75550183 + 0 NA Intergenic Intergenic 43343 ENSMUSG00000034913.10 ENSMUSG00000034913 ENSMUST00000226623 Cby2 protein_coding Interval_61284 chr15 80557965 80558343 + 0 NA intron (ENSMUSG00000050439.7, intron 2 of 6) protein_coding-intron (ENSMUSG00000050439.7, intron 1 of 5) 7002 ENSMUSG00000050439.7 ENSMUSG00000050439 ENSMUST00000229110 Enthd1 protein_coding Interval_100070 chr2 166917797 166918050 + 0 NA intron (ENSMUSG00000002718.14, intron 2 of 23) protein_coding-intron (ENSMUSG00000002718.14, intron 2 of 24) 11883 ENSMUSG00000002718.14 ENSMUSG00000002718 ENSMUST00000129061 Cse1l protein_coding Interval_161837 chr8 123116557 123118475 + 0 NA promoter-TSS (ENSMUSG00000034796.14) protein_coding-promoter-TSS (ENSMUSG00000034796.14) 142 ENSMUSG00000034796.14 ENSMUSG00000034796 ENSMUST00000127431 Cpne7 protein_coding Interval_114634 chr4 83328509 83331025 + 0 NA Intergenic Intergenic -43857 ENSMUSG00000096801.1 ENSMUSG00000096801 ENSMUST00000083017 Gm23412 snRNA Interval_168185 chr9 77819268 77819679 + 0 NA Intergenic Intergenic -9680 ENSMUSG00000111253.1 ENSMUSG00000111253 ENSMUST00000217012 Gm34654 lincRNA Interval_156783 chr8 59445167 59445936 + 0 NA intron (ENSMUSG00000110381.1, intron 4 of 6) lincRNA-intron (ENSMUSG00000110381.1, intron 4 of 6) 26245 ENSMUSG00000110381.1 ENSMUSG00000110381 ENSMUST00000209385 Gm34370 lincRNA Interval_22185 chr11 6900437 6901491 + 0 NA Intergenic Intergenic -38660 ENSMUSG00000082333.1 ENSMUSG00000082333 ENSMUST00000118142 Gm11984 processed_pseudogene Interval_51103 chr14 23159932 23161667 + 0 NA Intergenic Intergenic -66228 ENSMUSG00000068680.1 ENSMUSG00000068680 ENSMUST00000090409 Gm10248 antisense Interval_165001 chr9 43796769 43797615 + 0 NA intron (ENSMUSG00000032012.9, intron 5 of 7) protein_coding-intron (ENSMUSG00000032012.9, intron 5 of 5) 52548 ENSMUSG00000032012.9 ENSMUSG00000032012 ENSMUST00000180221 Nectin1 protein_coding Interval_100921 chr2 173347418 173347878 + 0 NA Intergenic Intergenic -46918 ENSMUSG00000086114.1 ENSMUSG00000086114 ENSMUST00000147357 Gm14642 lincRNA Interval_4303 chr1 72573955 72574387 + 0 NA Intergenic Intergenic -9080 ENSMUSG00000039354.16 ENSMUSG00000039354 ENSMUST00000126832 Smarcal1 protein_coding Interval_43274 chr13 28545653 28546034 + 0 NA intron (ENSMUSG00000085936.7, intron 7 of 7) processed_transcript-intron (ENSMUSG00000085936.7, intron 7 of 7) -28903 ENSMUSG00000085936.7 ENSMUSG00000085936 ENSMUST00000134624 2610307P16Rik processed_transcript Interval_155678 chr8 36094060 36095651 + 0 NA promoter-TSS (ENSMUSG00000050271.12) protein_coding-promoter-TSS (ENSMUSG00000050271.12) -6 ENSMUSG00000050271.12 ENSMUSG00000050271 ENSMUST00000150295 Prag1 protein_coding Interval_91355 chr2 38182568 38182739 + 0 NA intron (ENSMUSG00000035392.17, intron 2 of 5) protein_coding-intron (ENSMUSG00000035392.17, intron 2 of 21) -14834 ENSMUSG00000035392.17 ENSMUSG00000035392 ENSMUST00000128492 Dennd1a protein_coding Interval_151118 chr7 118656700 118657561 + 0 NA intron (ENSMUSG00000030650.18, intron 13 of 20) protein_coding-intron (ENSMUSG00000030650.18, intron 10 of 17) -31415 ENSMUSG00000109357.1 ENSMUSG00000109357 ENSMUST00000208632 Gm45236 TEC Interval_96368 chr2 122015985 122017335 + 0 NA Intergenic Intergenic -11982 ENSMUSG00000104603.1 ENSMUSG00000104603 ENSMUST00000197244 Gm47314 miRNA Interval_126980 chr5 98921500 98922498 + 0 NA Intergenic Intergenic 21833 ENSMUSG00000029334.14 ENSMUSG00000029334 ENSMUST00000160765 Prkg2 protein_coding Interval_116054 chr4 107286602 107287157 + 0 NA Intergenic Intergenic 16445 ENSMUSG00000082941.1 ENSMUSG00000082941 ENSMUST00000119210 Gm12850 processed_pseudogene Interval_13753 chr10 21826896 21827603 + 0 NA Intergenic Intergenic 17602 ENSMUSG00000097107.1 ENSMUSG00000097107 ENSMUST00000180731 Platr6 lincRNA Interval_161534 chr8 121044784 121045195 + 0 NA intron (ENSMUSG00000092329.1, intron 1 of 15) protein_coding-intron (ENSMUSG00000092329.1, intron 1 of 15) 38121 ENSMUSG00000097336.8 ENSMUSG00000097336 ENSMUST00000182264 Fendrr processed_transcript Interval_112396 chr4 41031083 41032018 + 0 NA Intergenic Intergenic 4760 ENSMUSG00000028427.13 ENSMUSG00000028427 ENSMUST00000149517 Aqp7 protein_coding Interval_119038 chr4 135140424 135141838 + 0 NA intron (ENSMUSG00000070691.10, intron 1 of 5) protein_coding-intron (ENSMUSG00000070691.10, intron 1 of 5) 3154 ENSMUSG00000084986.1 ENSMUSG00000084986 ENSMUST00000127711 Gm16224 antisense Interval_157578 chr8 71513181 71513587 + 0 NA Intergenic Intergenic -1632 ENSMUSG00000034845.6 ENSMUSG00000034845 ENSMUST00000048452 Plvap protein_coding Interval_113857 chr4 59381140 59382706 + 0 NA intron (ENSMUSG00000038578.15, intron 6 of 16) protein_coding-intron (ENSMUSG00000038578.15, intron 6 of 16) -13057 ENSMUSG00000083979.1 ENSMUSG00000083979 ENSMUST00000117967 Gm12527 processed_pseudogene Interval_39753 chr12 96865006 96865310 + 0 NA Intergenic Intergenic 57900 ENSMUSG00000043483.4 ENSMUSG00000043483 ENSMUST00000052882 Gm6863 processed_pseudogene Interval_156758 chr8 58062522 58063294 + 0 NA intron (ENSMUSG00000096914.3, intron 5 of 12) protein_coding-intron (ENSMUSG00000096914.3, intron 5 of 12) 171165 ENSMUSG00000109753.1 ENSMUSG00000109753 ENSMUST00000210669 Gm45633 TEC Interval_75753 chr17 71039998 71040404 + 0 NA intron (ENSMUSG00000024049.15, intron 5 of 17) protein_coding-intron (ENSMUSG00000024049.15, intron 5 of 36) 37568 ENSMUSG00000024049.15 ENSMUSG00000024049 ENSMUST00000233790 Myom1 protein_coding Interval_134376 chr6 27346302 27346800 + 0 NA intron (ENSMUSG00000024211.15, intron 8 of 9) protein_coding-intron (ENSMUSG00000024211.15, intron 8 of 9) 97402 ENSMUSG00000107377.1 ENSMUSG00000107377 ENSMUST00000202562 Gm42801 TEC Interval_35861 chr12 31286664 31287634 + 0 NA intron (ENSMUSG00000002900.17, intron 8 of 32) protein_coding-intron (ENSMUSG00000002900.17, intron 8 of 32) 21855 ENSMUSG00000002900.17 ENSMUSG00000002900 ENSMUST00000172134 Lamb1 protein_coding Interval_96966 chr2 130086660 130087045 + 0 NA TTS (ENSMUSG00000077348.1) snoRNA-TTS (ENSMUSG00000077348.1) 811 ENSMUSG00000077348.1 ENSMUSG00000077348 ENSMUST00000104160 Gm24665 snoRNA Interval_89103 chr2 16397683 16397906 + 0 NA intron (ENSMUSG00000026748.13, intron 1 of 12) protein_coding-intron (ENSMUSG00000026748.13, intron 1 of 13) -240902 ENSMUSG00000026748.13 ENSMUSG00000026748 ENSMUST00000126173 Plxdc2 protein_coding Interval_79775 chr18 35065500 35066140 + 0 NA intron (ENSMUSG00000118380.1, intron 3 of 3) processed_transcript-intron (ENSMUSG00000118380.1, intron 4 of 5) 21803 ENSMUSG00000117727.1 ENSMUSG00000117727 ENSMUST00000238134 Gm3587 lincRNA Interval_43921 chr13 38062971 38063165 + 0 NA Intergenic Intergenic -23134 ENSMUSG00000098481.1 ENSMUSG00000098481 ENSMUST00000184583 Gm27387 miRNA Interval_45708 chr13 57152415 57153731 + 0 NA Intergenic Intergenic -86774 ENSMUSG00000114363.1 ENSMUSG00000114363 ENSMUST00000225562 Gm48174 processed_pseudogene Interval_51602 chr14 30612095 30612942 + 0 NA intron (ENSMUSG00000021948.17, intron 1 of 13) protein_coding-intron (ENSMUSG00000021948.17, intron 1 of 5) -3223 ENSMUSG00000021948.17 ENSMUSG00000021948 ENSMUST00000227078 Prkcd protein_coding Interval_110130 chr3 153590047 153590338 + 0 NA intron (ENSMUSG00000052544.9, intron 1 of 4) protein_coding-intron (ENSMUSG00000052544.9, intron 1 of 2) -31510 ENSMUSG00000089376.1 ENSMUSG00000089376 ENSMUST00000158751 Gm22136 misc_RNA Interval_154994 chr8 25548007 25548829 + 0 NA TTS (ENSMUSG00000086134.1) antisense-TTS (ENSMUSG00000086134.1) 5142 ENSMUSG00000086134.1 ENSMUSG00000086134 ENSMUST00000140451 Gm16159 antisense Interval_149249 chr7 96669762 96670536 + 0 NA intron (ENSMUSG00000048078.16, intron 1 of 4) protein_coding-intron (ENSMUSG00000048078.16, intron 7 of 32) -41080 ENSMUSG00000085792.2 ENSMUSG00000085792 ENSMUST00000155217 Gm15414 antisense Interval_169249 chr9 95819954 95820416 + 0 NA intron (ENSMUSG00000049493.13, intron 1 of 15) protein_coding-intron (ENSMUSG00000049493.13, intron 1 of 15) 25126 ENSMUSG00000049493.13 ENSMUSG00000049493 ENSMUST00000135816 Pls1 protein_coding Interval_85170 chr19 23317929 23318529 + 0 NA intron (ENSMUSG00000033207.7, intron 10 of 12) protein_coding-intron (ENSMUSG00000033207.7, intron 11 of 13) 21900 ENSMUSG00000096249.1 ENSMUSG00000096249 ENSMUST00000104059 Gm24263 snRNA Interval_11348 chr1 181132001 181132393 + 0 NA intron (ENSMUSG00000026516.8, intron 6 of 22) protein_coding-intron (ENSMUSG00000026516.8, intron 6 of 22) -12496 ENSMUSG00000062169.13 ENSMUSG00000062169 ENSMUST00000111057 Cnih4 protein_coding Interval_155509 chr8 33990079 33990430 + 0 NA exon (ENSMUSG00000110663.1, exon 4 of 4) lincRNA-exon (ENSMUSG00000110663.1, exon 4 of 4) -3054 ENSMUSG00000110614.1 ENSMUSG00000110614 ENSMUST00000212738 Gm45817 TEC Interval_38242 chr12 76593753 76594352 + 0 NA intron (ENSMUSG00000021061.15, intron 32 of 35) protein_coding-intron (ENSMUSG00000021061.15, intron 32 of 35) -9966 ENSMUSG00000021061.15 ENSMUSG00000021061 ENSMUST00000166101 Sptb protein_coding Interval_55941 chr14 103011931 103013180 + 0 NA promoter-TSS (ENSMUSG00000115855.1) lincRNA-promoter-TSS (ENSMUSG00000115855.1) -353 ENSMUSG00000115855.1 ENSMUSG00000115855 ENSMUST00000230389 Gm34643 lincRNA Interval_5275 chr1 87175649 87176445 + 0 NA Intergenic Intergenic -7266 ENSMUSG00000036480.9 ENSMUSG00000036480 ENSMUST00000044533 Prss56 protein_coding Interval_151523 chr7 123248053 123248260 + 0 NA TTS (ENSMUSG00000030769.15) protein_coding-TTS (ENSMUSG00000030769.15) -17033 ENSMUSG00000030769.15 ENSMUSG00000030769 ENSMUST00000206180 Slc5a11 protein_coding Interval_85636 chr19 29238859 29240005 + 0 NA Intergenic Intergenic -13009 ENSMUSG00000024789.13 ENSMUSG00000024789 ENSMUST00000238009 Jak2 protein_coding Interval_81914 chr18 65813589 65814268 + 0 NA promoter-TSS (ENSMUSG00000024516.13) protein_coding-promoter-TSS (ENSMUSG00000024516.13) -2595 ENSMUSG00000117751.1 ENSMUSG00000117751 ENSMUST00000237019 Gm50256 TEC Interval_119341 chr4 136981106 136981845 + 0 NA exon (ENSMUSG00000060862.10, exon 19 of 19) protein_coding-exon (ENSMUSG00000060862.10, exon 19 of 19) 10187 ENSMUSG00000060862.10 ENSMUSG00000060862 ENSMUST00000145505 Zbtb40 protein_coding Interval_23044 chr11 19280745 19281393 + 0 NA Intergenic Intergenic 80000 ENSMUSG00000081054.1 ENSMUSG00000081054 ENSMUST00000117768 Gm12025 processed_pseudogene Interval_173184 chrX 73928041 73932016 + 0 NA promoter-TSS (ENSMUSG00000031387.14) protein_coding-promoter-TSS (ENSMUSG00000031387.14) 717 ENSMUSG00000031387.14 ENSMUSG00000031387 ENSMUST00000150241 Renbp protein_coding Interval_119878 chr4 140644720 140644970 + 0 NA intron (ENSMUSG00000040964.16, intron 1 of 27) protein_coding-intron (ENSMUSG00000040964.16, intron 1 of 27) -27780 ENSMUSG00000040964.16 ENSMUSG00000040964 ENSMUST00000154979 Arhgef10l protein_coding Interval_75899 chr17 72871960 72872204 + 0 NA Intergenic Intergenic 34546 ENSMUSG00000039770.6 ENSMUSG00000039770 ENSMUST00000233662 Ypel5 protein_coding Interval_96794 chr2 128324439 128325615 + 0 NA intron (ENSMUSG00000074813.14, intron 2 of 2) lincRNA-intron (ENSMUSG00000074813.14, intron 3 of 3) -98627 ENSMUSG00000079053.3 ENSMUSG00000079053 ENSMUST00000131961 Gm14010 lincRNA Interval_96877 chr2 129183539 129184089 + 0 NA exon (ENSMUSG00000086652.1, exon 1 of 2) antisense-exon (ENSMUSG00000086652.1, exon 1 of 2) 133 ENSMUSG00000086652.1 ENSMUSG00000086652 ENSMUST00000151051 Gm14029 antisense Interval_92330 chr2 58831667 58832862 + 0 NA intron (ENSMUSG00000036641.9, intron 12 of 14) protein_coding-intron (ENSMUSG00000036641.9, intron 12 of 14) -27170 ENSMUSG00000079353.2 ENSMUSG00000079353 ENSMUST00000112589 Gm11099 protein_coding Interval_120234 chr4 144644027 144644258 + 0 NA Intergenic Intergenic 30435 ENSMUSG00000070609.3 ENSMUSG00000070609 ENSMUST00000094510 Aadacl4 protein_coding Interval_28736 chr11 77995407 77995594 + 0 NA intron (ENSMUSG00000037791.15, intron 2 of 10) protein_coding-intron (ENSMUSG00000037791.15, intron 2 of 14) -28129 ENSMUSG00000037791.15 ENSMUSG00000037791 ENSMUST00000125079 Phf12 protein_coding Interval_63681 chr15 102756009 102756240 + 0 NA Intergenic Intergenic 39247 ENSMUSG00000116263.1 ENSMUSG00000116263 ENSMUST00000229081 Gm49473 processed_pseudogene Interval_111990 chr4 33066107 33066546 + 0 NA intron (ENSMUSG00000023267.10, intron 1 of 8) protein_coding-intron (ENSMUSG00000023267.10, intron 1 of 8) -12042 ENSMUSG00000082851.1 ENSMUSG00000082851 ENSMUST00000121630 Gm11931 processed_pseudogene Interval_50075 chr14 7825470 7826647 + 0 NA intron (ENSMUSG00000025278.9, intron 1 of 45) protein_coding-intron (ENSMUSG00000025278.9, intron 1 of 45) 24850 ENSMUSG00000049460.7 ENSMUSG00000049460 ENSMUST00000057361 Gm8396 processed_pseudogene Interval_170404 chr9 107703942 107704174 + 0 NA intron (ENSMUSG00000034684.12, intron 2 of 16) protein_coding-intron (ENSMUSG00000034684.12, intron 2 of 17) -19297 ENSMUSG00000034684.12 ENSMUSG00000034684 ENSMUST00000195023 Sema3f protein_coding Interval_47589 chr13 89634010 89634712 + 0 NA Intergenic Intergenic -28409 ENSMUSG00000089972.3 ENSMUSG00000089972 ENSMUST00000162402 Gm16318 processed_pseudogene Interval_164039 chr9 31086252 31086635 + 0 NA Intergenic Intergenic -3968 ENSMUSG00000097701.1 ENSMUSG00000097701 ENSMUST00000181215 Gm17508 lincRNA Interval_125134 chr5 64797296 64798107 + 0 NA intron (ENSMUSG00000097640.7, intron 1 of 4) processed_transcript-intron (ENSMUSG00000097640.7, intron 1 of 4) -5921 ENSMUSG00000029178.14 ENSMUSG00000029178 ENSMUST00000198946 Klf3 protein_coding Interval_120140 chr4 142976996 142978627 + 0 NA intron (ENSMUSG00000110067.2, intron 1 of 1) protein_coding-intron (ENSMUSG00000110067.2, intron 1 of 2) 95955 ENSMUSG00000110067.2 ENSMUSG00000110067 ENSMUST00000238915 6330411D24Rik protein_coding Interval_50073 chr14 7817500 7819345 + 0 NA exon (ENSMUSG00000025278.9, exon 1 of 46) protein_coding-exon (ENSMUSG00000025278.9, exon 1 of 46) 17214 ENSMUSG00000049460.7 ENSMUSG00000049460 ENSMUST00000057361 Gm8396 processed_pseudogene Interval_99198 chr2 157967376 157968349 + 0 NA Intergenic Intergenic 39350 ENSMUSG00000027650.12 ENSMUSG00000027650 ENSMUST00000124338 Tti1 protein_coding Interval_90564 chr2 31171970 31173646 + 0 NA intron (ENSMUSG00000000194.13, intron 1 of 6) protein_coding-intron (ENSMUSG00000000194.13, intron 5 of 17) -16883 ENSMUSG00000088891.1 ENSMUSG00000088891 ENSMUST00000158266 Gm22516 snoRNA Interval_56300 chr14 116897758 116898399 + 0 NA Intergenic Intergenic -27453 ENSMUSG00000058571.11 ENSMUSG00000058571 ENSMUST00000078849 Gpc6 protein_coding Interval_79498 chr18 32397284 32397552 + 0 NA intron (ENSMUSG00000024381.16, intron 1 of 13) protein_coding-intron (ENSMUSG00000024381.16, intron 1 of 18) -19140 ENSMUSG00000097413.2 ENSMUSG00000097413 ENSMUST00000234408 A830052D11Rik lincRNA Interval_42638 chr13 17581818 17582362 + 0 NA intron (ENSMUSG00000055137.7, intron 6 of 13) protein_coding-intron (ENSMUSG00000055137.7, intron 6 of 13) 112647 ENSMUSG00000055137.7 ENSMUSG00000055137 ENSMUST00000221467 Sugct protein_coding Interval_84736 chr19 16028860 16029860 + 0 NA Intergenic Intergenic 3909 ENSMUSG00000117711.1 ENSMUSG00000117711 ENSMUST00000235413 Rpl37-ps1 processed_pseudogene Interval_1732 chr1 33190129 33190341 + 0 NA Intergenic Intergenic -1758 ENSMUSG00000088750.1 ENSMUSG00000088750 ENSMUST00000158125 Gm24901 snRNA Interval_171568 chr9 119237647 119237979 + 0 NA TTS (ENSMUSG00000036737.12) protein_coding-TTS (ENSMUSG00000036737.12) -6121 ENSMUSG00000092212.3 ENSMUSG00000092212 ENSMUST00000173185 Slc22a13b polymorphic_pseudogene Interval_156598 chr8 54113574 54113851 + 0 NA intron (ENSMUSG00000031520.6, intron 1 of 3) protein_coding-intron (ENSMUSG00000031520.6, intron 1 of 6) 35933 ENSMUSG00000031520.6 ENSMUSG00000031520 ENSMUST00000210831 Vegfc protein_coding Interval_119152 chr4 135872979 135874214 + 0 NA promoter-TSS (ENSMUSG00000028675.12) protein_coding-promoter-TSS (ENSMUSG00000028675.12) -535 ENSMUSG00000028675.12 ENSMUSG00000028675 ENSMUST00000180300 Pnrc2 protein_coding Interval_153143 chr7 141631510 141631996 + 0 NA exon (ENSMUSG00000002957.11, exon 22 of 22) protein_coding-exon (ENSMUSG00000002957.11, exon 22 of 22) 11052 ENSMUSG00000098759.1 ENSMUSG00000098759 ENSMUST00000184158 Mir7063 miRNA Interval_91096 chr2 35006735 35006997 + 0 NA promoter-TSS (ENSMUSG00000026874.10) protein_coding-promoter-TSS (ENSMUSG00000026874.10) 12779 ENSMUSG00000026874.10 ENSMUSG00000026874 ENSMUST00000151628 Hc protein_coding Interval_85369 chr19 25267491 25268164 + 0 NA intron (ENSMUSG00000032702.16, intron 1 of 13) protein_coding-intron (ENSMUSG00000032702.16, intron 1 of 13) 79376 ENSMUSG00000118238.1 ENSMUSG00000118238 ENSMUST00000235913 Gm34432 processed_pseudogene Interval_21197 chr10 127164824 127166673 + 0 NA promoter-TSS (ENSMUSG00000006731.10) protein_coding-promoter-TSS (ENSMUSG00000006731.10) -111 ENSMUSG00000006731.10 ENSMUSG00000006731 ENSMUST00000220055 B4galnt1 protein_coding Interval_131414 chr5 137029668 137030383 + 0 NA promoter-TSS (ENSMUSG00000037428.14) protein_coding-promoter-TSS (ENSMUSG00000037428.14) 3633 ENSMUSG00000037428.14 ENSMUSG00000037428 ENSMUST00000187382 Vgf protein_coding Interval_17869 chr10 80502489 80505139 + 0 NA intron (ENSMUSG00000045518.8, intron 1 of 1) protein_coding-intron (ENSMUSG00000045518.8, intron 1 of 1) -4955 ENSMUSG00000104429.1 ENSMUSG00000104429 ENSMUST00000194078 2610034O05Rik TEC Interval_64222 chr16 9279707 9281237 + 0 NA Intergenic Intergenic 121702 ENSMUSG00000116123.1 ENSMUSG00000116123 ENSMUST00000229655 Gm49451 lincRNA Interval_75657 chr17 70117903 70118414 + 0 NA intron (ENSMUSG00000003279.17, intron 2 of 13) protein_coding-intron (ENSMUSG00000003279.17, intron 2 of 14) -192327 ENSMUSG00000117078.1 ENSMUSG00000117078 ENSMUST00000232868 Gm4561 processed_pseudogene Interval_118783 chr4 133680330 133680876 + 0 NA exon (ENSMUSG00000007880.16, exon 20 of 20) protein_coding-exon (ENSMUSG00000007880.16, exon 20 of 20) -7956 ENSMUSG00000043257.15 ENSMUSG00000043257 ENSMUST00000151837 Pigv protein_coding Interval_69507 chr16 93938480 93938705 + 0 NA intron (ENSMUSG00000047109.13, intron 1 of 1) protein_coding-intron (ENSMUSG00000047109.13, intron 2 of 2) 3792 ENSMUSG00000047109.13 ENSMUSG00000047109 ENSMUST00000232406 Cldn14 protein_coding Interval_37771 chr12 71882875 71883504 + 0 NA intron (ENSMUSG00000034574.10, intron 1 of 14) protein_coding-intron (ENSMUSG00000034574.10, intron 1 of 25) -35898 ENSMUSG00000098224.1 ENSMUSG00000098224 ENSMUST00000183329 Gm7985 processed_pseudogene Interval_156486 chr8 48667243 48667411 + 0 NA intron (ENSMUSG00000031561.16, intron 2 of 2) protein_coding-intron (ENSMUSG00000031561.16, intron 1 of 28) -36158 ENSMUSG00000110509.1 ENSMUSG00000110509 ENSMUST00000212961 Gm45772 processed_pseudogene Interval_17944 chr10 80998091 81000443 + 0 NA intron (ENSMUSG00000048240.14, intron 1 of 4) protein_coding-intron (ENSMUSG00000048240.14, intron 1 of 3) 15646 ENSMUSG00000048240.14 ENSMUSG00000048240 ENSMUST00000126317 Gng7 protein_coding Interval_65403 chr16 22160580 22164014 + 0 NA promoter-TSS (ENSMUSG00000033581.17) protein_coding-promoter-TSS (ENSMUSG00000033581.17) -41061 ENSMUSG00000033581.17 ENSMUSG00000033581 ENSMUST00000127696 Igf2bp2 protein_coding Interval_32074 chr11 105123758 105124467 + 0 NA Intergenic Intergenic 11456 ENSMUSG00000020690.12 ENSMUSG00000020690 ENSMUST00000154543 Efcab3 protein_coding Interval_35715 chr12 28601475 28601690 + 0 NA intron (ENSMUSG00000036655.8, intron 3 of 6) protein_coding-intron (ENSMUSG00000036655.8, intron 3 of 6) -19067 ENSMUSG00000020636.14 ENSMUSG00000020636 ENSMUST00000020965 Allc protein_coding Interval_156491 chr8 48706733 48707476 + 0 NA intron (ENSMUSG00000031561.16, intron 1 of 2) protein_coding-intron (ENSMUSG00000031561.16, intron 1 of 2) -75935 ENSMUSG00000110509.1 ENSMUSG00000110509 ENSMUST00000212961 Gm45772 processed_pseudogene Interval_27907 chr11 70763394 70764802 + 0 NA promoter-TSS (ENSMUSG00000043602.5) protein_coding-promoter-TSS (ENSMUSG00000043602.5) -111 ENSMUSG00000043602.5 ENSMUSG00000043602 ENSMUST00000060444 Zfp3 protein_coding Interval_108599 chr3 129464797 129465017 + 0 NA Intergenic Intergenic 2935 ENSMUSG00000106258.1 ENSMUSG00000106258 ENSMUST00000198361 Rpl7a-ps7 processed_pseudogene Interval_12485 chr1 194108834 194109900 + 0 NA Intergenic Intergenic 113392 ENSMUSG00000103692.1 ENSMUSG00000103692 ENSMUST00000193395 4930503O07Rik lincRNA Interval_25586 chr11 49969003 49969564 + 0 NA intron (ENSMUSG00000020374.16, intron 2 of 6) protein_coding-intron (ENSMUSG00000020374.16, intron 7 of 13) 5498 ENSMUSG00000020374.16 ENSMUSG00000020374 ENSMUST00000109172 Rasgef1c protein_coding Interval_53147 chr14 54711763 54712036 + 0 NA exon (ENSMUSG00000052435.7, exon 1 of 2) protein_coding-exon (ENSMUSG00000052435.7, exon 1 of 2) 275 ENSMUSG00000052435.7 ENSMUSG00000052435 ENSMUST00000064290 Cebpe protein_coding Interval_52299 chr14 44115563 44117649 + 0 NA TTS (ENSMUSG00000115056.1) unprocessed_pseudogene-TTS (ENSMUSG00000115056.1) 171 ENSMUSG00000115056.1 ENSMUSG00000115056 ENSMUST00000228592 Gm49103 unprocessed_pseudogene Interval_105078 chr3 81030104 81030612 + 0 NA Intergenic Intergenic -2596 ENSMUSG00000106293.1 ENSMUSG00000106293 ENSMUST00000198860 Gm42476 lincRNA Interval_125202 chr5 65322025 65322714 + 0 NA intron (ENSMUSG00000029191.16, intron 1 of 24) protein_coding-intron (ENSMUSG00000029191.16, intron 1 of 24) -13375 ENSMUSG00000105935.1 ENSMUSG00000105935 ENSMUST00000197871 Gm43628 TEC Interval_115107 chr4 90032008 90032513 + 0 NA Intergenic Intergenic -153267 ENSMUSG00000085690.1 ENSMUSG00000085690 ENSMUST00000145751 Gm12629 lincRNA Interval_95214 chr2 104842717 104843272 + 0 NA intron (ENSMUSG00000027171.10, intron 2 of 3) protein_coding-intron (ENSMUSG00000027171.10, intron 3 of 5) 6499 ENSMUSG00000027171.10 ENSMUSG00000027171 ENSMUST00000126824 Prrg4 protein_coding Interval_17232 chr10 75163431 75163709 + 0 NA intron (ENSMUSG00000009681.10, intron 1 of 3) protein_coding-intron (ENSMUSG00000009681.10, intron 14 of 22) -12806 ENSMUSG00000009681.10 ENSMUSG00000009681 ENSMUST00000219807 Bcr protein_coding Interval_120857 chr4 151085666 151086345 + 0 NA TTS (ENSMUSG00000014592.21) protein_coding-TTS (ENSMUSG00000014592.21) -3565 ENSMUSG00000078491.2 ENSMUSG00000078491 ENSMUST00000105667 Gm13090 protein_coding Interval_121539 chr5 3312415 3312632 + 0 NA Intergenic Intergenic 42204 ENSMUSG00000106658.1 ENSMUSG00000106658 ENSMUST00000197473 Gm36548 lincRNA Interval_10923 chr1 177040095 177040450 + 0 NA intron (ENSMUSG00000019699.16, intron 11 of 12) protein_coding-intron (ENSMUSG00000019699.16, intron 11 of 12) -3336 ENSMUSG00000104391.1 ENSMUSG00000104391 ENSMUST00000192402 Gm37960 TEC Interval_18668 chr10 88960511 88961043 + 0 NA intron (ENSMUSG00000035189.17, intron 23 of 26) protein_coding-intron (ENSMUSG00000035189.17, intron 24 of 27) 74785 ENSMUSG00000020062.7 ENSMUSG00000020062 ENSMUST00000020255 Slc5a8 protein_coding Interval_156256 chr8 46582402 46582632 + 0 NA intron (ENSMUSG00000038225.15, intron 11 of 14) protein_coding-intron (ENSMUSG00000038225.15, intron 11 of 14) -22232 ENSMUSG00000110270.1 ENSMUSG00000110270 ENSMUST00000211143 Gm45607 antisense Interval_27484 chr11 68145813 68147146 + 0 NA intron (ENSMUSG00000020903.13, intron 6 of 6) protein_coding-intron (ENSMUSG00000020903.13, intron 7 of 7) 49674 ENSMUSG00000087242.2 ENSMUSG00000087242 ENSMUST00000152781 C78197 antisense Interval_156833 chr8 60942296 60943338 + 0 NA intron (ENSMUSG00000004319.15, intron 1 of 11) protein_coding-intron (ENSMUSG00000004319.15, intron 2 of 13) 36786 ENSMUSG00000038005.15 ENSMUSG00000038005 ENSMUST00000211016 Hpf1 protein_coding Interval_139698 chr6 107266003 107266233 + 0 NA intron (ENSMUSG00000107714.1, intron 1 of 3) lincRNA-intron (ENSMUSG00000107714.1, intron 1 of 3) 10620 ENSMUSG00000107714.1 ENSMUSG00000107714 ENSMUST00000203245 Gm34933 lincRNA Interval_106568 chr3 97311566 97312568 + 0 NA Intergenic Intergenic -14150 ENSMUSG00000038256.15 ENSMUSG00000038256 ENSMUST00000127319 Bcl9 protein_coding Interval_135921 chr6 48718226 48719778 + 0 NA exon (ENSMUSG00000043931.10, exon 1 of 1) protein_coding-exon (ENSMUSG00000043931.10, exon 1 of 1) 345 ENSMUSG00000043931.10 ENSMUSG00000043931 ENSMUST00000204266 Gimap7 protein_coding Interval_48724 chr13 102326963 102327370 + 0 NA Intergenic Intergenic 39986 ENSMUSG00000114444.1 ENSMUSG00000114444 ENSMUST00000225142 Gm47008 processed_pseudogene Interval_3509 chr1 59172138 59172337 + 0 NA intron (ENSMUSG00000026024.14, intron 27 of 33) protein_coding-intron (ENSMUSG00000026024.14, intron 27 of 33) -13569 ENSMUSG00000079550.9 ENSMUSG00000079550 ENSMUST00000186790 Mpp4 protein_coding Interval_162463 chr8 129115333 129116339 + 0 NA intron (ENSMUSG00000056018.14, intron 8 of 14) protein_coding-intron (ENSMUSG00000056018.14, intron 5 of 14) -2410 ENSMUSG00000077771.1 ENSMUSG00000077771 ENSMUST00000104583 Gm22374 snoRNA Interval_152893 chr7 139530492 139530877 + 0 NA intron (ENSMUSG00000025477.14, intron 2 of 6) protein_coding-intron (ENSMUSG00000025477.14, intron 8 of 15) 14025 ENSMUSG00000025477.14 ENSMUSG00000025477 ENSMUST00000152475 Inpp5a protein_coding Interval_157861 chr8 75025846 75026855 + 0 NA intron (ENSMUSG00000034518.14, intron 10 of 11) protein_coding-intron (ENSMUSG00000034518.14, intron 9 of 10) -7357 ENSMUSG00000042870.15 ENSMUSG00000042870 ENSMUST00000212278 Tom1 protein_coding Interval_123993 chr5 37061011 37061481 + 0 NA intron (ENSMUSG00000063646.18, intron 1 of 1) protein_coding-intron (ENSMUSG00000063646.18, intron 1 of 12) -19600 ENSMUSG00000097686.1 ENSMUSG00000097686 ENSMUST00000180816 Gm26647 antisense Interval_137976 chr6 83882305 83882965 + 0 NA intron (ENSMUSG00000030016.14, intron 1 of 3) protein_coding-intron (ENSMUSG00000030016.14, intron 1 of 3) -7255 ENSMUSG00000079501.3 ENSMUSG00000079501 ENSMUST00000113842 Gm5138 processed_pseudogene Interval_38273 chr12 76839991 76840480 + 0 NA promoter-TSS (ENSMUSG00000033373.16) protein_coding-promoter-TSS (ENSMUSG00000033373.16) -17327 ENSMUSG00000021062.15 ENSMUSG00000021062 ENSMUST00000134124 Rab15 protein_coding Interval_70006 chr17 4326961 4327270 + 0 NA Intergenic Intergenic -205013 ENSMUSG00000116615.1 ENSMUSG00000116615 ENSMUST00000231319 4930548J01Rik processed_transcript Interval_789 chr1 11276996 11278582 + 0 NA intron (ENSMUSG00000048960.13, intron 3 of 5) protein_coding-intron (ENSMUSG00000048960.13, intron 37 of 39) -53615 ENSMUSG00000101827.1 ENSMUSG00000101827 ENSMUST00000187404 Gm28686 processed_pseudogene Interval_78346 chr18 12089119 12089971 + 0 NA intron (ENSMUSG00000049411.15, intron 3 of 3) protein_coding-intron (ENSMUSG00000049411.15, intron 3 of 12) 31935 ENSMUSG00000049411.15 ENSMUSG00000049411 ENSMUST00000234833 Tmem241 protein_coding Interval_38143 chr12 75920736 75921190 + 0 NA intron (ENSMUSG00000063450.14, intron 21 of 114) protein_coding-intron (ENSMUSG00000063450.14, intron 21 of 115) 11860 ENSMUSG00000092922.1 ENSMUSG00000092922 ENSMUST00000175181 Mir5101 miRNA Interval_96392 chr2 122147478 122148664 + 0 NA intron (ENSMUSG00000060802.8, intron 1 of 3) protein_coding-intron (ENSMUSG00000027233.4, intron 2 of 17) 385 ENSMUSG00000060802.8 ENSMUSG00000060802 ENSMUST00000102476 B2m protein_coding Interval_73870 chr17 45045977 45046327 + 0 NA intron (ENSMUSG00000038954.14, intron 9 of 10) protein_coding-intron (ENSMUSG00000038954.14, intron 10 of 11) -101085 ENSMUSG00000117044.1 ENSMUSG00000117044 ENSMUST00000233532 Gm35097 lincRNA Interval_133450 chr6 5172315 5173187 + 0 NA intron (ENSMUSG00000002588.13, intron 5 of 5) protein_coding-intron (ENSMUSG00000002588.13, intron 7 of 8) 21033 ENSMUSG00000002588.13 ENSMUSG00000002588 ENSMUST00000176933 Pon1 protein_coding Interval_132752 chr5 147589694 147590391 + 0 NA intron (ENSMUSG00000029648.13, intron 18 of 29) protein_coding-intron (ENSMUSG00000029648.13, intron 18 of 29) 56765 ENSMUSG00000029648.13 ENSMUSG00000029648 ENSMUST00000031652 Flt1 protein_coding Interval_116702 chr4 116731157 116731949 + 0 NA intron (ENSMUSG00000033985.17, intron 2 of 10) protein_coding-intron (ENSMUSG00000033985.17, intron 1 of 10) 5654 ENSMUSG00000098491.1 ENSMUSG00000098491 ENSMUST00000183634 Gm27688 misc_RNA Interval_13543 chr10 19356053 19357701 + 0 NA exon (ENSMUSG00000045591.6, exon 1 of 1) protein_coding-exon (ENSMUSG00000045591.6, exon 1 of 1) 344 ENSMUSG00000045591.6 ENSMUSG00000045591 ENSMUST00000053225 Olig3 protein_coding Interval_26938 chr11 61708649 61709345 + 0 NA exon (ENSMUSG00000042377.8, exon 5 of 5) protein_coding-exon (ENSMUSG00000042377.8, exon 5 of 5) 10949 ENSMUSG00000042371.12 ENSMUSG00000042371 ENSMUST00000148584 Slc5a10 protein_coding Interval_6807 chr1 119674934 119675431 + 0 NA intron (ENSMUSG00000026384.13, intron 6 of 7) protein_coding-intron (ENSMUSG00000026384.13, intron 25 of 26) 40811 ENSMUSG00000026384.13 ENSMUSG00000026384 ENSMUST00000163621 Ptpn4 protein_coding Interval_151037 chr7 118078825 118080531 + 0 NA Intergenic Intergenic 35578 ENSMUSG00000008683.16 ENSMUSG00000008683 ENSMUST00000128482 Rps15a protein_coding Interval_118622 chr4 132823529 132824656 + 0 NA Intergenic Intergenic 8883 ENSMUSG00000028882.13 ENSMUSG00000028882 ENSMUST00000148228 Ppp1r8 protein_coding Interval_63583 chr15 102188554 102189449 + 0 NA promoter-TSS (ENSMUSG00000023044.2) protein_coding-promoter-TSS (ENSMUSG00000023044.2) -327 ENSMUSG00000023044.2 ENSMUSG00000023044 ENSMUST00000230328 Csad protein_coding Interval_171254 chr9 115686155 115687189 + 0 NA Intergenic Intergenic 5929 ENSMUSG00000110905.1 ENSMUSG00000110905 ENSMUST00000215982 Gm48007 lincRNA Interval_101596 chr3 7502970 7504040 + 0 NA promoter-TSS (ENSMUSG00000043542.12) protein_coding-promoter-TSS (ENSMUSG00000043542.12) 19 ENSMUSG00000043542.12 ENSMUSG00000043542 ENSMUST00000192835 Zc2hc1a protein_coding Interval_49856 chr13 117225810 117226271 + 0 NA TTS (ENSMUSG00000021728.8) protein_coding-TTS (ENSMUSG00000021728.8) -4968 ENSMUSG00000091423.2 ENSMUSG00000091423 ENSMUST00000238456 Gm17509 antisense Interval_144683 chr7 27507729 27508858 + 0 NA promoter-TSS (ENSMUSG00000087371.1) antisense-promoter-TSS (ENSMUSG00000087371.1) -171 ENSMUSG00000087371.1 ENSMUSG00000087371 ENSMUST00000147449 Gm15541 antisense Interval_47409 chr13 83662107 83662692 + 0 NA exon (ENSMUSG00000005583.16, exon 11 of 11) protein_coding-exon (ENSMUSG00000005583.16, exon 11 of 11) -24823 ENSMUSG00000114254.1 ENSMUSG00000114254 ENSMUST00000224411 Gm48067 processed_pseudogene Interval_84221 chr19 8849529 8852483 + 0 NA exon (ENSMUSG00000071656.7, exon 1 of 2) protein_coding-exon (ENSMUSG00000071656.7, exon 1 of 2) 238 ENSMUSG00000071656.7 ENSMUSG00000071656 ENSMUST00000096257 Lrrn4cl protein_coding Interval_161411 chr8 120309290 120310010 + 0 NA intron (ENSMUSG00000031822.20, intron 1 of 2) protein_coding-intron (ENSMUSG00000092329.1, intron 1 of 15) -81420 ENSMUSG00000097960.1 ENSMUSG00000097960 ENSMUST00000183235 A330074K22Rik lincRNA Interval_133721 chr6 9716236 9716589 + 0 NA Intergenic Intergenic 456442 ENSMUSG00000107459.1 ENSMUSG00000107459 ENSMUST00000203122 Gm5110 processed_pseudogene Interval_93208 chr2 71170052 71170274 + 0 NA Intergenic Intergenic -41841 ENSMUSG00000027012.15 ENSMUSG00000027012 ENSMUST00000138613 Dync1i2 protein_coding Interval_101502 chr3 3104007 3104371 + 0 NA Intergenic Intergenic -76432 ENSMUSG00000098307.1 ENSMUSG00000098307 ENSMUST00000184213 Gm27460 miRNA Interval_168934 chr9 89178685 89179573 + 0 NA Intergenic Intergenic -1242 ENSMUSG00000074146.9 ENSMUSG00000074146 ENSMUST00000098484 4930579C12Rik lincRNA Interval_56733 chr14 121722577 121723357 + 0 NA intron (ENSMUSG00000025558.19, intron 1 of 52) protein_coding-intron (ENSMUSG00000025558.19, intron 1 of 52) 15894 ENSMUSG00000025558.19 ENSMUSG00000025558 ENSMUST00000238406 Dock9 protein_coding Interval_171485 chr9 118705556 118705951 + 0 NA intron (ENSMUSG00000039115.13, intron 3 of 5) protein_coding-intron (ENSMUSG00000039115.13, intron 15 of 27) -115558 ENSMUSG00000110676.1 ENSMUSG00000110676 ENSMUST00000212679 Gm45897 lincRNA Interval_148934 chr7 90167111 90168210 + 0 NA intron (ENSMUSG00000039361.11, intron 4 of 19) protein_coding-intron (ENSMUSG00000039361.11, intron 4 of 20) -18267 ENSMUSG00000109005.1 ENSMUSG00000109005 ENSMUST00000207822 Gm45221 TEC Interval_27999 chr11 72078100 72078688 + 0 NA intron (ENSMUSG00000040543.16, intron 3 of 18) protein_coding-intron (ENSMUSG00000040543.16, intron 4 of 19) 35870 ENSMUSG00000020808.3 ENSMUSG00000020808 ENSMUST00000125655 Pimreg protein_coding Interval_45386 chr13 54804277 54804727 + 0 NA Intergenic Intergenic 14857 ENSMUSG00000025875.14 ENSMUSG00000025875 ENSMUST00000139574 Tspan17 protein_coding Interval_153029 chr7 140971184 140971591 + 0 NA Intergenic Intergenic 4166 ENSMUSG00000025491.14 ENSMUSG00000025491 ENSMUST00000026564 Ifitm1 protein_coding Interval_144543 chr7 25798603 25798811 + 0 NA Intergenic Intergenic -5864 ENSMUSG00000108767.1 ENSMUSG00000108767 ENSMUST00000205306 Gm29763 processed_pseudogene Interval_30875 chr11 97012328 97012553 + 0 NA promoter-TSS (ENSMUSG00000038560.7) protein_coding-promoter-TSS (ENSMUSG00000038560.7) -6293 ENSMUSG00000038560.7 ENSMUSG00000038560 ENSMUST00000107622 Sp6 protein_coding Interval_22161 chr11 6704142 6704572 + 0 NA Intergenic Intergenic 15138 ENSMUSG00000080833.1 ENSMUSG00000080833 ENSMUST00000119236 Gm11976 processed_pseudogene Interval_66010 chr16 30932599 30933306 + 0 NA intron (ENSMUSG00000116581.1, intron 2 of 3) lincRNA-intron (ENSMUSG00000116581.1, intron 1 of 2) 2677 ENSMUSG00000116581.1 ENSMUSG00000116581 ENSMUST00000232539 Gm46565 lincRNA Interval_64224 chr16 9291174 9291808 + 0 NA Intergenic Intergenic 132721 ENSMUSG00000116123.1 ENSMUSG00000116123 ENSMUST00000229655 Gm49451 lincRNA Interval_144868 chr7 28685479 28685996 + 0 NA Intergenic Intergenic -7302 ENSMUSG00000037463.14 ENSMUSG00000037463 ENSMUST00000127368 Fbxo27 protein_coding Interval_35046 chr12 16850518 16851414 + 0 NA promoter-TSS (ENSMUSG00000114018.1) lincRNA-promoter-TSS (ENSMUSG00000114018.1) -85 ENSMUSG00000114018.1 ENSMUSG00000114018 ENSMUST00000221201 Gm36495 lincRNA Interval_159958 chr8 105419134 105419405 + 0 NA intron (ENSMUSG00000054320.16, intron 1 of 13) protein_coding-intron (ENSMUSG00000054320.16, intron 1 of 13) 5641 ENSMUSG00000054320.16 ENSMUSG00000054320 ENSMUST00000216457 Lrrc36 protein_coding Interval_7619 chr1 132533792 132534130 + 0 NA promoter-TSS (ENSMUSG00000053024.14) protein_coding-promoter-TSS (ENSMUSG00000053024.14) 8904 ENSMUSG00000053024.14 ENSMUSG00000053024 ENSMUST00000186530 Cntn2 protein_coding Interval_86446 chr19 40563062 40563400 + 0 NA intron (ENSMUSG00000025007.13, intron 13 of 18) protein_coding-intron (ENSMUSG00000025007.13, intron 13 of 18) -2173 ENSMUSG00000096592.1 ENSMUSG00000096592 ENSMUST00000120920 Gm15801 processed_pseudogene Interval_139619 chr6 103483640 103483863 + 0 NA Intergenic Intergenic -42501 ENSMUSG00000107804.1 ENSMUSG00000107804 ENSMUST00000203379 Gm44439 TEC Interval_44540 chr13 45917097 45918177 + 0 NA intron (ENSMUSG00000046876.16, intron 1 of 2) protein_coding-intron (ENSMUSG00000046876.16, intron 2 of 7) -18403 ENSMUSG00000113987.1 ENSMUSG00000113987 ENSMUST00000222376 4930453C13Rik antisense Interval_51522 chr14 29707424 29707765 + 0 NA intron (ENSMUSG00000021991.9, intron 2 of 37) protein_coding-intron (ENSMUSG00000021991.9, intron 2 of 37) 25801 ENSMUSG00000114570.1 ENSMUSG00000114570 ENSMUST00000225976 Gm48058 lincRNA Interval_78695 chr18 17634319 17635155 + 0 NA Intergenic Intergenic 41382 ENSMUSG00000117491.1 ENSMUSG00000117491 ENSMUST00000234842 Gm50082 processed_pseudogene Interval_142902 chr6 146808858 146809067 + 0 NA intron (ENSMUSG00000040187.15, intron 2 of 14) protein_coding-intron (ENSMUSG00000040187.15, intron 2 of 14) -21562 ENSMUSG00000040187.15 ENSMUSG00000040187 ENSMUST00000204578 Arntl2 protein_coding Interval_106914 chr3 101835882 101836843 + 0 NA promoter-TSS (ENSMUSG00000044313.13) protein_coding-promoter-TSS (ENSMUSG00000044313.13) 12597 ENSMUSG00000044313.13 ENSMUSG00000044313 ENSMUST00000118411 Mab21l3 protein_coding Interval_11402 chr1 181677888 181679019 + 0 NA TTS (ENSMUSG00000047369.17) protein_coding-TTS (ENSMUSG00000047369.17) 11789 ENSMUSG00000103100.1 ENSMUSG00000103100 ENSMUST00000194607 Gm37664 TEC Interval_10088 chr1 165727037 165727245 + 0 NA Intergenic Intergenic 5585 ENSMUSG00000103686.1 ENSMUSG00000103686 ENSMUST00000192469 Gm37073 lincRNA Interval_92471 chr2 59962114 59963726 + 0 NA intron (ENSMUSG00000026987.16, intron 7 of 34) protein_coding-intron (ENSMUSG00000026987.16, intron 6 of 33) 29424 ENSMUSG00000081236.1 ENSMUSG00000081236 ENSMUST00000120482 Gm13574 processed_pseudogene Interval_59783 chr15 59206755 59207004 + 0 NA Intergenic Intergenic -4029 ENSMUSG00000025922.9 ENSMUSG00000025922 ENSMUST00000027054 Rpl7-ps8 processed_pseudogene Interval_125506 chr5 67778123 67778751 + 0 NA intron (ENSMUSG00000037685.15, intron 6 of 6) protein_coding-intron (ENSMUSG00000037685.15, intron 7 of 36) -19107 ENSMUSG00000106859.1 ENSMUSG00000106859 ENSMUST00000201074 Gm42737 TEC Interval_20097 chr10 114531850 114532743 + 0 NA intron (ENSMUSG00000050663.8, intron 6 of 18) protein_coding-intron (ENSMUSG00000050663.8, intron 6 of 18) 181822 ENSMUSG00000104335.1 ENSMUSG00000104335 ENSMUST00000192301 Gm38281 TEC Interval_32483 chr11 107817160 107817666 + 0 NA Intergenic Intergenic -9961 ENSMUSG00000088279.1 ENSMUSG00000088279 ENSMUST00000157654 Gm23120 misc_RNA Interval_41725 chr12 118372279 118372508 + 0 NA Intergenic Intergenic -71025 ENSMUSG00000025323.10 ENSMUSG00000025323 ENSMUST00000221844 Sp4 protein_coding Interval_170605 chr9 109204071 109204286 + 0 NA Intergenic Intergenic -8216 ENSMUSG00000049314.11 ENSMUSG00000049314 ENSMUST00000199102 Fbxw13 protein_coding Interval_129483 chr5 120492156 120493132 + 0 NA exon (ENSMUSG00000029598.12, exon 4 of 8) protein_coding-exon (ENSMUSG00000029598.12, exon 4 of 8) 10968 ENSMUSG00000029598.12 ENSMUSG00000029598 ENSMUST00000151361 Plbd2 protein_coding Interval_128750 chr5 115068628 115069433 + 0 NA intron (ENSMUSG00000029550.11, intron 2 of 4) protein_coding-intron (ENSMUSG00000029550.11, intron 2 of 10) -5337 ENSMUSG00000029550.11 ENSMUSG00000029550 ENSMUST00000128678 Sppl3 protein_coding Interval_5819 chr1 92161486 92162382 + 0 NA intron (ENSMUSG00000026313.16, intron 1 of 3) protein_coding-intron (ENSMUSG00000026313.16, intron 1 of 26) 33760 ENSMUSG00000026313.16 ENSMUSG00000026313 ENSMUST00000212408 Hdac4 protein_coding Interval_32531 chr11 108203584 108204010 + 0 NA intron (ENSMUSG00000050965.14, intron 2 of 2) protein_coding-intron (ENSMUSG00000050965.14, intron 2 of 16) 21947 ENSMUSG00000084978.1 ENSMUSG00000084978 ENSMUST00000153899 Gm11655 antisense Interval_36352 chr12 41797125 41797926 + 0 NA TTS (ENSMUSG00000113105.1) antisense-TTS (ENSMUSG00000113105.1) 30998 ENSMUSG00000113105.1 ENSMUSG00000113105 ENSMUST00000221020 Gm47371 antisense Interval_166526 chr9 60562552 60563717 + 0 NA Intergenic Intergenic 14939 ENSMUSG00000111512.1 ENSMUSG00000111512 ENSMUST00000215435 Gm17853 processed_pseudogene Interval_25191 chr11 45038352 45038540 + 0 NA Intergenic Intergenic 78482 ENSMUSG00000084773.1 ENSMUSG00000084773 ENSMUST00000143869 Gm12159 lincRNA Interval_51506 chr14 28961179 28961884 + 0 NA intron (ENSMUSG00000021991.9, intron 1 of 7) protein_coding-intron (ENSMUSG00000021991.9, intron 31 of 37) 48268 ENSMUSG00000088682.1 ENSMUSG00000088682 ENSMUST00000158057 Gm23999 rRNA Interval_9632 chr1 160516768 160516974 + 0 NA intron (ENSMUSG00000026721.16, intron 13 of 20) protein_coding-intron (ENSMUSG00000026721.16, intron 13 of 20) 56939 ENSMUSG00000104026.1 ENSMUSG00000104026 ENSMUST00000192582 Gm37212 TEC Interval_53341 chr14 56412646 56413560 + 0 NA intron (ENSMUSG00000000365.9, intron 2 of 10) protein_coding-intron (ENSMUSG00000000365.9, intron 2 of 36) -3663 ENSMUSG00000088761.1 ENSMUSG00000088761 ENSMUST00000158136 Gm24392 snRNA Interval_78003 chr18 6594982 6595684 + 0 NA Intergenic Intergenic -8296 ENSMUSG00000039540.9 ENSMUSG00000039540 ENSMUST00000234337 4921524L21Rik protein_coding Interval_59914 chr15 61844621 61844891 + 0 NA Intergenic Intergenic 18509 ENSMUSG00000116017.1 ENSMUSG00000116017 ENSMUST00000229370 Gm18154 processed_pseudogene Interval_42443 chr13 13603810 13604055 + 0 NA intron (ENSMUSG00000019726.12, intron 1 of 4) protein_coding-intron (ENSMUSG00000019726.12, intron 1 of 52) -80159 ENSMUSG00000019726.12 ENSMUSG00000019726 ENSMUST00000221587 Lyst protein_coding Interval_173585 chrX 100294457 100295773 + 0 NA intron (ENSMUSG00000059327.9, intron 1 of 1) protein_coding-intron (ENSMUSG00000059327.9, intron 1 of 6) -34577 ENSMUSG00000083936.1 ENSMUSG00000083936 ENSMUST00000121499 Gm14829 processed_pseudogene Interval_172972 chrX 58150660 58151596 + 0 NA Intergenic Intergenic 33358 ENSMUSG00000081837.1 ENSMUSG00000081837 ENSMUST00000121814 Gm14649 processed_pseudogene Interval_45046 chr13 51723369 51724096 + 0 NA TTS (ENSMUSG00000021451.16) protein_coding-TTS (ENSMUSG00000021451.16) -41562 ENSMUSG00000092648.1 ENSMUSG00000092648 ENSMUST00000174907 Gm23566 miRNA Interval_115961 chr4 106617020 106617575 + 0 NA promoter-TSS (ENSMUSG00000054362.9) protein_coding-promoter-TSS (ENSMUSG00000054362.9) -59 ENSMUSG00000054362.9 ENSMUSG00000054362 ENSMUST00000106788 Lexm protein_coding Interval_87292 chr19 47420997 47421229 + 0 NA intron (ENSMUSG00000053617.12, intron 2 of 13) protein_coding-intron (ENSMUSG00000053617.12, intron 2 of 14) -10754 ENSMUSG00000053617.12 ENSMUSG00000053617 ENSMUST00000237828 Sh3pxd2a protein_coding Interval_135347 chr6 38543572 38544052 + 0 NA exon (ENSMUSG00000081670.1, exon 2 of 4) unprocessed_pseudogene-exon (ENSMUSG00000081670.1, exon 2 of 4) 2262 ENSMUSG00000081670.1 ENSMUSG00000081670 ENSMUST00000121946 Gm15697 unprocessed_pseudogene Interval_159695 chr8 97877122 97877420 + 0 NA TTS (ENSMUSG00000109645.1) processed_pseudogene-TTS (ENSMUSG00000109645.1) 1117 ENSMUSG00000109645.1 ENSMUSG00000109645 ENSMUST00000210820 Gm45246 processed_pseudogene Interval_126794 chr5 92970042 92971129 + 0 NA Intergenic Intergenic -33246 ENSMUSG00000106930.1 ENSMUSG00000106930 ENSMUST00000200896 Gm6450 processed_pseudogene Interval_120246 chr4 144878416 144879671 + 0 NA Intergenic Intergenic -13784 ENSMUSG00000066026.14 ENSMUSG00000066026 ENSMUST00000133265 Dhrs3 protein_coding Interval_106176 chr3 94360788 94361052 + 0 NA promoter-TSS (ENSMUSG00000105708.1) processed_transcript-promoter-TSS (ENSMUSG00000105708.1) -78 ENSMUSG00000105708.1 ENSMUSG00000105708 ENSMUST00000196531 Gm36070 processed_transcript Interval_34868 chr12 12826242 12828820 + 0 NA Intergenic Intergenic -38039 ENSMUSG00000113363.1 ENSMUSG00000113363 ENSMUST00000221441 Gm48187 lincRNA Interval_173203 chrX 74084594 74086340 + 0 NA exon (ENSMUSG00000031393.16, exon 1 of 1) protein_coding-exon (ENSMUSG00000031393.16, exon 1 of 1) 130 ENSMUSG00000031393.16 ENSMUSG00000031393 ENSMUST00000198358 Mecp2 protein_coding Interval_62074 chr15 86228180 86228684 + 0 NA intron (ENSMUSG00000051864.10, intron 1 of 12) protein_coding-intron (ENSMUSG00000051864.10, intron 1 of 12) -7073 ENSMUSG00000051864.10 ENSMUSG00000051864 ENSMUST00000229242 Tbc1d22a protein_coding Interval_151841 chr7 127041637 127042924 + 0 NA intron (ENSMUSG00000030677.8, intron 1 of 5) protein_coding-intron (ENSMUSG00000030677.8, intron 1 of 13) -3832 ENSMUSG00000088660.1 ENSMUSG00000088660 ENSMUST00000158035 Gm25333 misc_RNA Interval_107619 chr3 108918100 108918311 + 0 NA Intergenic Intergenic -6737 ENSMUSG00000027881.14 ENSMUSG00000027881 ENSMUST00000197805 Prpf38b protein_coding Interval_95018 chr2 103086604 103086848 + 0 NA intron (ENSMUSG00000010911.12, intron 2 of 5) protein_coding-intron (ENSMUSG00000010911.12, intron 2 of 6) 3769 ENSMUSG00000010911.12 ENSMUSG00000010911 ENSMUST00000147131 Apip protein_coding Interval_25358 chr11 46649891 46650189 + 0 NA Intergenic Intergenic -3081 ENSMUSG00000080970.1 ENSMUSG00000080970 ENSMUST00000117622 Gm12173 unprocessed_pseudogene Interval_174725 chrX 164179910 164180176 + 0 NA intron (ENSMUSG00000015405.15, intron 9 of 11) protein_coding-intron (ENSMUSG00000015405.15, intron 14 of 17) 17865 ENSMUSG00000015405.15 ENSMUSG00000015405 ENSMUST00000131543 Ace2 protein_coding Interval_93558 chr2 74143581 74143935 + 0 NA intron (ENSMUSG00000084791.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000084791.1, intron 1 of 2) 8001 ENSMUSG00000084791.1 ENSMUSG00000084791 ENSMUST00000132332 Gm13667 lincRNA Interval_50558 chr14 15319228 15320160 + 0 NA intron (ENSMUSG00000114789.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000114789.1, intron 1 of 2) -11254 ENSMUSG00000114789.1 ENSMUSG00000114789 ENSMUST00000224606 Gm31577 lincRNA Interval_17483 chr10 77182770 77183287 + 0 NA Intergenic Intergenic 45928 ENSMUSG00000112612.1 ENSMUSG00000112612 ENSMUST00000218871 Gm7775 processed_pseudogene Interval_158756 chr8 85936148 85937412 + 0 NA exon (ENSMUSG00000036879.15, exon 11 of 11) protein_coding-exon (ENSMUSG00000036879.15, exon 11 of 11) -57465 ENSMUSG00000098439.1 ENSMUSG00000098439 ENSMUST00000183645 Hm629797 sense_intronic Interval_151121 chr7 118686707 118687124 + 0 NA Intergenic Intergenic -1630 ENSMUSG00000109357.1 ENSMUSG00000109357 ENSMUST00000208632 Gm45236 TEC Interval_158803 chr8 86764534 86765863 + 0 NA Intergenic Intergenic -19264 ENSMUSG00000036840.5 ENSMUSG00000036840 ENSMUST00000045296 Siah1a protein_coding Interval_80733 chr18 46651835 46652182 + 0 NA Intergenic Intergenic 21201 ENSMUSG00000117780.1 ENSMUSG00000117780 ENSMUST00000236340 Gm3734 lincRNA Interval_116081 chr4 107478260 107478871 + 0 NA intron (ENSMUSG00000034762.9, intron 1 of 9) protein_coding-intron (ENSMUSG00000034762.9, intron 2 of 10) 43993 ENSMUSG00000092723.1 ENSMUSG00000092723 ENSMUST00000174982 Gm24804 miRNA Interval_28117 chr11 72975251 72975841 + 0 NA exon (ENSMUSG00000020788.15, exon 8 of 22) protein_coding-exon (ENSMUSG00000020788.15, exon 8 of 22) 14377 ENSMUSG00000020788.15 ENSMUSG00000020788 ENSMUST00000135234 Atp2a3 protein_coding Interval_25646 chr11 50389420 50389821 + 0 NA exon (ENSMUSG00000020375.9, exon 18 of 18) protein_coding-exon (ENSMUSG00000020375.9, exon 18 of 18) 6441 ENSMUSG00000007850.16 ENSMUSG00000007850 ENSMUST00000151537 Hnrnph1 protein_coding Interval_162949 chr9 13681193 13682041 + 0 NA intron (ENSMUSG00000031925.17, intron 1 of 3) protein_coding-intron (ENSMUSG00000031925.17, intron 1 of 3) 19157 ENSMUSG00000031925.17 ENSMUSG00000031925 ENSMUST00000177755 Maml2 protein_coding Interval_148412 chr7 81110592 81111100 + 0 NA Intergenic Intergenic -4004 ENSMUSG00000025726.11 ENSMUSG00000025726 ENSMUST00000119083 Slc28a1 protein_coding Interval_150250 chr7 108990664 108991570 + 0 NA intron (ENSMUSG00000031028.14, intron 1 of 3) protein_coding-intron (ENSMUSG00000031028.14, intron 1 of 3) 40460 ENSMUSG00000031028.14 ENSMUSG00000031028 ENSMUST00000147943 Tub protein_coding Interval_140444 chr6 118166867 118167312 + 0 NA intron (ENSMUSG00000030110.13, intron 15 of 18) protein_coding-intron (ENSMUSG00000030110.13, intron 15 of 19) 30629 ENSMUSG00000030110.13 ENSMUSG00000030110 ENSMUST00000088790 Ret protein_coding Interval_26669 chr11 59569482 59569854 + 0 NA TTS (ENSMUSG00000059610.5) protein_coding-TTS (ENSMUSG00000059610.5) 6501 ENSMUSG00000059610.5 ENSMUSG00000059610 ENSMUST00000071943 Olfr222 protein_coding Interval_42198 chr13 9796139 9796817 + 0 NA Intergenic Intergenic -24033 ENSMUSG00000113754.1 ENSMUSG00000113754 ENSMUST00000223507 Gm47401 processed_pseudogene Interval_44437 chr13 44839420 44840760 + 0 NA promoter-TSS (ENSMUSG00000038518.15) protein_coding-promoter-TSS (ENSMUSG00000038518.15) -1807 ENSMUSG00000088189.1 ENSMUSG00000088189 ENSMUST00000157564 Gm22213 snoRNA Interval_17777 chr10 80024330 80026358 + 0 NA intron (ENSMUSG00000035697.14, intron 3 of 14) protein_coding-intron (ENSMUSG00000035697.14, intron 10 of 21) 3601 ENSMUSG00000035697.14 ENSMUSG00000035697 ENSMUST00000150022 Arhgap45 protein_coding Interval_133715 chr6 9438407 9438816 + 0 NA Intergenic Intergenic 291845 ENSMUSG00000107851.1 ENSMUSG00000107851 ENSMUST00000203681 Gm35736 processed_pseudogene Interval_159898 chr8 104932981 104933457 + 0 NA intron (ENSMUSG00000031886.14, intron 11 of 12) protein_coding-intron (ENSMUSG00000031886.14, intron 11 of 11) -6346 ENSMUSG00000118611.1 ENSMUSG00000118611 ENSMUST00000239300 AC166833.1 unprocessed_pseudogene Interval_93971 chr2 80329471 80330071 + 0 NA intron (ENSMUSG00000027006.13, intron 9 of 22) protein_coding-intron (ENSMUSG00000027006.13, intron 9 of 22) -17883 ENSMUSG00000027006.13 ENSMUSG00000027006 ENSMUST00000154912 Dnajc10 protein_coding Interval_44313 chr13 43565177 43566805 + 0 NA Intergenic Intergenic -5800 ENSMUSG00000021371.5 ENSMUSG00000021371 ENSMUST00000223353 Mcur1 protein_coding Interval_120821 chr4 150825218 150825476 + 0 NA promoter-TSS (ENSMUSG00000085097.1) lincRNA-promoter-TSS (ENSMUSG00000085097.1) -386 ENSMUSG00000085097.1 ENSMUSG00000085097 ENSMUST00000133196 Gm13049 lincRNA Interval_97783 chr2 144022485 144023450 + 0 NA Intergenic Intergenic -10135 ENSMUSG00000037307.11 ENSMUSG00000037307 ENSMUST00000110032 Banf2 protein_coding Interval_117800 chr4 126288180 126288959 + 0 NA intron (ENSMUSG00000056174.8, intron 1 of 3) protein_coding-intron (ENSMUSG00000056174.8, intron 1 of 3) -11961 ENSMUSG00000056174.8 ENSMUSG00000056174 ENSMUST00000128435 Col8a2 protein_coding Interval_7550 chr1 132155746 132156227 + 0 NA Intergenic Intergenic 16482 ENSMUSG00000099874.1 ENSMUSG00000099874 ENSMUST00000187926 Gm29629 antisense Interval_138698 chr6 91249971 91250972 + 0 NA intron (ENSMUSG00000064080.12, intron 2 of 16) protein_coding-intron (ENSMUSG00000064080.12, intron 2 of 17) 37644 ENSMUSG00000064080.12 ENSMUSG00000064080 ENSMUST00000137029 Fbln2 protein_coding Interval_95261 chr2 105334326 105334764 + 0 NA intron (ENSMUSG00000055312.2, intron 2 of 2) protein_coding-intron (ENSMUSG00000055312.2, intron 3 of 3) 60803 ENSMUSG00000005973.6 ENSMUSG00000005973 ENSMUST00000127019 Rcn1 protein_coding Interval_7593 chr1 132390026 132392059 + 0 NA promoter-TSS (ENSMUSG00000042066.16) protein_coding-promoter-TSS (ENSMUSG00000042066.16) 9913 ENSMUSG00000090079.1 ENSMUSG00000090079 ENSMUST00000159257 Gm15849 antisense Interval_18432 chr10 85916348 85917461 + 0 NA promoter-TSS (ENSMUSG00000035529.10) protein_coding-promoter-TSS (ENSMUSG00000035529.10) 82 ENSMUSG00000035529.10 ENSMUSG00000035529 ENSMUST00000218969 Prdm4 protein_coding Interval_47737 chr13 92072828 92074567 + 0 NA intron (ENSMUSG00000021708.17, intron 1 of 9) protein_coding-intron (ENSMUSG00000021708.17, intron 1 of 33) 57959 ENSMUSG00000021708.17 ENSMUSG00000021708 ENSMUST00000146492 Rasgrf2 protein_coding Interval_157418 chr8 70233866 70234946 + 0 NA promoter-TSS (ENSMUSG00000002343.11) protein_coding-promoter-TSS (ENSMUSG00000002343.11) 180 ENSMUSG00000036054.15 ENSMUSG00000036054 ENSMUST00000129402 Sugp2 protein_coding Interval_55363 chr14 85109376 85109574 + 0 NA Intergenic Intergenic -350392 ENSMUSG00000115743.1 ENSMUSG00000115743 ENSMUST00000227353 Gm7004 processed_pseudogene Interval_126879 chr5 96510524 96511771 + 0 NA intron (ENSMUSG00000034687.8, intron 2 of 5) protein_coding-intron (ENSMUSG00000034687.8, intron 2 of 73) 25381 ENSMUSG00000105446.1 ENSMUSG00000105446 ENSMUST00000199565 Gm42605 TEC Interval_131899 chr5 140673112 140673539 + 0 NA intron (ENSMUSG00000036555.14, intron 14 of 18) protein_coding-intron (ENSMUSG00000036555.14, intron 18 of 22) -24328 ENSMUSG00000036565.7 ENSMUSG00000036565 ENSMUST00000200302 Ttyh3 protein_coding Interval_125130 chr5 64749635 64749903 + 0 NA intron (ENSMUSG00000097640.7, intron 1 of 4) processed_transcript-intron (ENSMUSG00000097640.7, intron 1 of 4) -51248 ENSMUSG00000097668.2 ENSMUSG00000097668 ENSMUST00000180650 Gm26761 lincRNA Interval_16862 chr10 69327186 69329842 + 0 NA Intergenic Intergenic 16375 ENSMUSG00000112798.1 ENSMUSG00000112798 ENSMUST00000217861 Gm40685 lincRNA Interval_137349 chr6 71589408 71590967 + 0 NA TTS (ENSMUSG00000053470.13) protein_coding-TTS (ENSMUSG00000053470.13) 42803 ENSMUSG00000053470.13 ENSMUSG00000053470 ENSMUST00000206597 Kdm3a protein_coding Interval_97814 chr2 144229396 144230245 + 0 NA Intergenic Intergenic -13421 ENSMUSG00000085127.1 ENSMUSG00000085127 ENSMUST00000146746 4930444E06Rik antisense Interval_47797 chr13 93008282 93008468 + 0 NA Intergenic Intergenic -65004 ENSMUSG00000114382.1 ENSMUSG00000114382 ENSMUST00000225665 Gm4814 antisense Interval_48785 chr13 103225389 103225794 + 0 NA intron (ENSMUSG00000034751.17, intron 1 of 3) protein_coding-intron (ENSMUSG00000034751.17, intron 1 of 4) -64753 ENSMUSG00000091577.2 ENSMUSG00000091577 ENSMUST00000167849 Gm6211 transcribed_processed_pseudogene Interval_79089 chr18 24451346 24451754 + 0 NA Intergenic Intergenic -19300 ENSMUSG00000024273.8 ENSMUSG00000024273 ENSMUST00000097646 2700062C07Rik protein_coding Interval_62120 chr15 87343515 87344235 + 0 NA Intergenic Intergenic 100325 ENSMUSG00000115930.1 ENSMUSG00000115930 ENSMUST00000229090 A930027H12Rik lincRNA Interval_88628 chr2 7492169 7492561 + 0 NA intron (ENSMUSG00000002107.18, intron 1 of 3) protein_coding-intron (ENSMUSG00000002107.18, intron 1 of 3) -37574 ENSMUSG00000099424.1 ENSMUSG00000099424 ENSMUST00000187783 Gm28641 lincRNA Interval_30512 chr11 94860090 94860515 + 0 NA TTS (ENSMUSG00000043522.8) unprocessed_pseudogene-TTS (ENSMUSG00000043522.8) 1457 ENSMUSG00000043522.8 ENSMUSG00000043522 ENSMUST00000124176 A430060F13Rik unprocessed_pseudogene Interval_159788 chr8 103482023 103482306 + 0 NA Intergenic Intergenic 81459 ENSMUSG00000109699.1 ENSMUSG00000109699 ENSMUST00000210549 Gm45277 lincRNA Interval_121918 chr5 9622190 9622515 + 0 NA intron (ENSMUSG00000003974.6, intron 1 of 5) protein_coding-intron (ENSMUSG00000003974.6, intron 1 of 5) -19745 ENSMUSG00000106637.1 ENSMUSG00000106637 ENSMUST00000199761 Gm42455 TEC Interval_11304 chr1 180847990 180848686 + 0 NA Intergenic Intergenic 6120 ENSMUSG00000103979.1 ENSMUSG00000103979 ENSMUST00000193226 Gm20305 processed_pseudogene Interval_157223 chr8 68157514 68157703 + 0 NA intron (ENSMUSG00000030465.19, intron 2 of 2) protein_coding-intron (ENSMUSG00000030465.19, intron 1 of 16) 54419 ENSMUSG00000030465.19 ENSMUSG00000030465 ENSMUST00000178529 Psd3 protein_coding Interval_2430 chr1 39281442 39282147 + 0 NA intron (ENSMUSG00000026077.15, intron 2 of 2) protein_coding-intron (ENSMUSG00000026077.15, intron 2 of 20) -5229 ENSMUSG00000092553.1 ENSMUSG00000092553 ENSMUST00000174365 Gm20428 processed_pseudogene Interval_131490 chr5 137530639 137532025 + 0 NA promoter-TSS (ENSMUSG00000029713.15) protein_coding-promoter-TSS (ENSMUSG00000029713.15) -1091 ENSMUSG00000090873.1 ENSMUSG00000090873 ENSMUST00000163194 Gm17112 antisense Interval_167116 chr9 65435379 65436415 + 0 NA exon (ENSMUSG00000059183.12, exon 1 of 9) protein_coding-exon (ENSMUSG00000059183.12, exon 1 of 9) -1128 ENSMUSG00000059183.12 ENSMUSG00000059183 ENSMUST00000130057 Mtfmt protein_coding Interval_27955 chr11 71439430 71440796 + 0 NA Intergenic Intergenic -3933 ENSMUSG00000085230.1 ENSMUSG00000085230 ENSMUST00000152249 Gm16013 lincRNA Interval_91758 chr2 49312724 49313530 + 0 NA intron (ENSMUSG00000036792.12, intron 2 of 3) protein_coding-intron (ENSMUSG00000036792.12, intron 8 of 9) 4972 ENSMUSG00000081272.1 ENSMUSG00000081272 ENSMUST00000119733 Ap2m1-ps processed_pseudogene Interval_108296 chr3 123395709 123397152 + 0 NA Intergenic Intergenic -5187 ENSMUSG00000080545.1 ENSMUSG00000080545 ENSMUST00000116895 Gm22713 snRNA Interval_9961 chr1 164391747 164392180 + 0 NA intron (ENSMUSG00000026575.15, intron 13 of 15) protein_coding-intron (ENSMUSG00000026575.15, intron 11 of 12) -32750 ENSMUSG00000103493.1 ENSMUSG00000103493 ENSMUST00000194180 Gm37411 TEC Interval_171553 chr9 119172015 119172333 + 0 NA intron (ENSMUSG00000070280.13, intron 8 of 10) protein_coding-intron (ENSMUSG00000070280.13, intron 9 of 11) 9444 ENSMUSG00000111197.1 ENSMUSG00000111197 ENSMUST00000213924 Gm10608 processed_pseudogene Interval_131838 chr5 140264326 140264678 + 0 NA intron (ENSMUSG00000029554.15, intron 9 of 16) protein_coding-intron (ENSMUSG00000029554.15, intron 9 of 17) 54960 ENSMUSG00000087248.7 ENSMUSG00000087248 ENSMUST00000133999 Gm16120 antisense Interval_57943 chr15 25669406 25670211 + 0 NA intron (ENSMUSG00000022272.17, intron 2 of 2) protein_coding-intron (ENSMUSG00000022272.17, intron 2 of 40) -11990 ENSMUSG00000089639.1 ENSMUSG00000089639 ENSMUST00000161524 Gm2862 processed_pseudogene Interval_157922 chr8 76067883 76068179 + 0 NA intron (ENSMUSG00000110485.1, intron 1 of 9) lincRNA-intron (ENSMUSG00000110485.1, intron 1 of 9) -45976 ENSMUSG00000077537.1 ENSMUSG00000077537 ENSMUST00000104349 Gm22544 snoRNA Interval_170235 chr9 106377118 106377490 + 0 NA Intergenic Intergenic 2685 ENSMUSG00000053716.9 ENSMUSG00000053716 ENSMUST00000193878 Dusp7 protein_coding Interval_64124 chr16 8560980 8563877 + 0 NA intron (ENSMUSG00000057880.12, intron 1 of 2) protein_coding-intron (ENSMUSG00000057880.12, intron 1 of 15) -21199 ENSMUSG00000057880.12 ENSMUSG00000057880 ENSMUST00000128459 Abat protein_coding Interval_37309 chr12 65056837 65057235 + 0 NA TTS (ENSMUSG00000087790.1) snoRNA-TTS (ENSMUSG00000087790.1) 463 ENSMUSG00000087790.1 ENSMUSG00000087790 ENSMUST00000157165 Gm25970 snoRNA Interval_103063 chr3 34802909 34803124 + 0 NA Intergenic Intergenic -23600 ENSMUSG00000114832.2 ENSMUSG00000114832 ENSMUST00000238552 Gm21388 lincRNA Interval_119746 chr4 139641363 139642569 + 0 NA exon (ENSMUSG00000028737.15, exon 9 of 15) protein_coding-exon (ENSMUSG00000028737.15, exon 9 of 15) -2076 ENSMUSG00000098569.1 ENSMUSG00000098569 ENSMUST00000183787 Mir7020 miRNA Interval_67698 chr16 56022450 56023086 + 0 NA intron (ENSMUSG00000071533.11, intron 1 of 3) protein_coding-intron (ENSMUSG00000071533.11, intron 2 of 4) 6938 ENSMUSG00000071533.11 ENSMUSG00000071533 ENSMUST00000122253 Pcnp protein_coding Interval_121525 chr5 3193464 3193812 + 0 NA Intergenic Intergenic -18697 ENSMUSG00000105800.1 ENSMUSG00000105800 ENSMUST00000196472 Gm18985 unprocessed_pseudogene Interval_90239 chr2 29223342 29224611 + 0 NA intron (ENSMUSG00000035513.19, intron 2 of 5) protein_coding-intron (ENSMUSG00000035513.19, intron 2 of 8) 24149 ENSMUSG00000035513.19 ENSMUSG00000035513 ENSMUST00000149096 Ntng2 protein_coding Interval_130976 chr5 134358477 134359741 + 0 NA exon (ENSMUSG00000023079.14, exon 30 of 31) protein_coding-exon (ENSMUSG00000023079.14, exon 30 of 31) 17915 ENSMUSG00000023079.14 ENSMUSG00000023079 ENSMUST00000201647 Gtf2ird1 protein_coding Interval_137955 chr6 83710304 83712487 + 0 NA promoter-TSS (ENSMUSG00000085794.5) antisense-promoter-TSS (ENSMUSG00000085794.5) 131 ENSMUSG00000034777.2 ENSMUSG00000034777 ENSMUST00000037807 Vax2 protein_coding Interval_67330 chr16 46474552 46474808 + 0 NA intron (ENSMUSG00000022656.15, intron 1 of 2) protein_coding-intron (ENSMUSG00000022656.15, intron 1 of 5) 22092 ENSMUSG00000022656.15 ENSMUSG00000022656 ENSMUST00000133935 Nectin3 protein_coding Interval_96635 chr2 126679020 126679302 + 0 NA intron (ENSMUSG00000098024.1, intron 1 of 1) antisense-intron (ENSMUSG00000098024.1, intron 1 of 1) 3245 ENSMUSG00000098024.1 ENSMUSG00000098024 ENSMUST00000182590 Gm27003 antisense Interval_10049 chr1 165344486 165345146 + 0 NA intron (ENSMUSG00000026571.12, intron 3 of 6) protein_coding-intron (ENSMUSG00000026571.12, intron 14 of 18) -34703 ENSMUSG00000104427.1 ENSMUSG00000104427 ENSMUST00000193181 Gm38368 TEC Interval_114866 chr4 86544905 86546323 + 0 NA intron (ENSMUSG00000028492.13, intron 1 of 2) protein_coding-intron (ENSMUSG00000028492.13, intron 1 of 3) -6497 ENSMUSG00000028492.13 ENSMUSG00000028492 ENSMUST00000139694 Saxo1 protein_coding Interval_88765 chr2 10390595 10391728 + 0 NA intron (ENSMUSG00000061186.15, intron 3 of 3) protein_coding-intron (ENSMUSG00000061186.15, intron 2 of 22) -17120 ENSMUSG00000086748.1 ENSMUSG00000086748 ENSMUST00000137351 Gm13261 processed_transcript Interval_165752 chr9 52167847 52169527 + 0 NA promoter-TSS (ENSMUSG00000035164.8) protein_coding-promoter-TSS (ENSMUSG00000035164.8) -115 ENSMUSG00000035164.8 ENSMUSG00000035164 ENSMUST00000165519 Zc3h12c protein_coding Interval_141863 chr6 134980895 134981904 + 0 NA promoter-TSS (ENSMUSG00000090698.2) protein_coding-promoter-TSS (ENSMUSG00000090698.2) -319 ENSMUSG00000090698.2 ENSMUSG00000090698 ENSMUST00000167323 Apold1 protein_coding Interval_27777 chr11 69933781 69936500 + 0 NA promoter-TSS (ENSMUSG00000018554.13) protein_coding-promoter-TSS (ENSMUSG00000018554.13) -774 ENSMUSG00000018554.13 ENSMUSG00000018554 ENSMUST00000148395 Ybx2 protein_coding Interval_61227 chr15 80099063 80099642 + 0 NA intron (ENSMUSG00000022415.12, intron 1 of 2) protein_coding-intron (ENSMUSG00000022415.12, intron 1 of 3) 1482 ENSMUSG00000022415.12 ENSMUSG00000022415 ENSMUST00000135727 Syngr1 protein_coding Interval_151361 chr7 121745007 121746179 + 0 NA intron (ENSMUSG00000000216.8, intron 5 of 12) protein_coding-intron (ENSMUSG00000000216.8, intron 5 of 12) 11114 ENSMUSG00000000216.8 ENSMUSG00000000216 ENSMUST00000000221 Scnn1g protein_coding Interval_128730 chr5 114968918 114969424 + 0 NA promoter-TSS (ENSMUSG00000086054.2) antisense-promoter-TSS (ENSMUSG00000086054.2) 348 ENSMUSG00000086140.1 ENSMUSG00000086140 ENSMUST00000138108 Hnf1aos2 antisense Interval_29415 chr11 83832214 83833146 + 0 NA intron (ENSMUSG00000085235.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000085235.1, intron 1 of 1) -11985 ENSMUSG00000084666.1 ENSMUSG00000084666 ENSMUST00000122717 Gm23211 misc_RNA Interval_170017 chr9 103678801 103679672 + 0 NA intron (ENSMUSG00000042757.16, intron 2 of 3) protein_coding-intron (ENSMUSG00000042757.16, intron 1 of 4) -79072 ENSMUSG00000102441.1 ENSMUSG00000102441 ENSMUST00000195052 Gm38032 TEC Interval_160487 chr8 109943695 109944032 + 0 NA exon (ENSMUSG00000031732.12, exon 19 of 19) protein_coding-exon (ENSMUSG00000031732.12, exon 19 of 19) 18190 ENSMUSG00000001672.14 ENSMUSG00000001672 ENSMUST00000155052 Marveld3 protein_coding Interval_173911 chrX 109702565 109702899 + 0 NA Intergenic Intergenic -207489 ENSMUSG00000083928.1 ENSMUSG00000083928 ENSMUST00000118899 Gm4991 processed_pseudogene Interval_100968 chr2 173714547 173715278 + 0 NA Intergenic Intergenic -4503 ENSMUSG00000057047.5 ENSMUSG00000057047 ENSMUST00000073081 1700010B08Rik protein_coding Interval_148696 chr7 84240317 84241434 + 0 NA Intergenic Intergenic -7956 ENSMUSG00000109091.1 ENSMUSG00000109091 ENSMUST00000207963 Gm44827 lincRNA Interval_18860 chr10 91383940 91384658 + 0 NA Intergenic Intergenic -39055 ENSMUSG00000111591.1 ENSMUSG00000111591 ENSMUST00000215290 Gm47083 processed_pseudogene Interval_25463 chr11 48764653 48765450 + 0 NA Intergenic Intergenic -11337 ENSMUSG00000082454.3 ENSMUSG00000082454 ENSMUST00000120566 Gm12183 processed_pseudogene Interval_106525 chr3 96937495 96939400 + 0 NA intron (ENSMUSG00000057123.14, intron 1 of 3) protein_coding-intron (ENSMUSG00000057123.14, intron 1 of 3) -12427 ENSMUSG00000049908.6 ENSMUSG00000049908 ENSMUST00000062944 Gja8 protein_coding Interval_104271 chr3 62458383 62458731 + 0 NA intron (ENSMUSG00000036885.14, intron 7 of 7) protein_coding-intron (ENSMUSG00000036885.14, intron 12 of 13) 31377 ENSMUSG00000036885.14 ENSMUSG00000036885 ENSMUST00000192138 Arhgef26 protein_coding Interval_85240 chr19 24120650 24120896 + 0 NA intron (ENSMUSG00000024812.11, intron 11 of 23) protein_coding-intron (ENSMUSG00000024812.11, intron 10 of 22) 26294 ENSMUSG00000024812.11 ENSMUSG00000024812 ENSMUST00000237550 Tjp2 protein_coding Interval_87798 chr19 55925971 55926945 + 0 NA intron (ENSMUSG00000024985.20, intron 13 of 13) protein_coding-intron (ENSMUSG00000024985.20, intron 11 of 11) 84786 ENSMUSG00000099746.1 ENSMUSG00000099746 ENSMUST00000190974 Ppnr sense_intronic Interval_29053 chr11 80072823 80073362 + 0 NA intron (ENSMUSG00000017561.16, intron 1 of 3) protein_coding-intron (ENSMUSG00000017561.16, intron 1 of 7) 7769 ENSMUSG00000017561.16 ENSMUSG00000017561 ENSMUST00000178280 Crlf3 protein_coding Interval_172541 chrX 36211335 36211563 + 0 NA Intergenic Intergenic 1585 ENSMUSG00000083130.1 ENSMUSG00000083130 ENSMUST00000118672 Gm14560 processed_pseudogene Interval_130335 chr5 125922055 125922489 + 0 NA Intergenic Intergenic -6498 ENSMUSG00000105274.1 ENSMUSG00000105274 ENSMUST00000199057 1700048F04Rik lincRNA Interval_173213 chrX 74260432 74261378 + 0 NA promoter-TSS (ENSMUSG00000081375.1) transcribed_processed_pseudogene-promoter-TSS (ENSMUSG00000081375.1) -127 ENSMUSG00000081375.1 ENSMUSG00000081375 ENSMUST00000119926 Gm14686 transcribed_processed_pseudogene Interval_54758 chr14 74797186 74798499 + 0 NA intron (ENSMUSG00000068015.8, intron 13 of 18) protein_coding-intron (ENSMUSG00000068015.8, intron 13 of 19) -2537 ENSMUSG00000068015.8 ENSMUSG00000068015 ENSMUST00000227433 Lrch1 protein_coding Interval_131859 chr5 140417832 140419886 + 0 NA promoter-TSS (ENSMUSG00000056076.13) protein_coding-promoter-TSS (ENSMUSG00000056076.13) -8480 ENSMUSG00000098319.1 ENSMUSG00000098319 ENSMUST00000184833 Mir7038 miRNA Interval_35761 chr12 29075915 29077095 + 0 NA Intergenic Intergenic 30232 ENSMUSG00000113544.1 ENSMUSG00000113544 ENSMUST00000222186 4833405L11Rik lincRNA Interval_3730 chr1 62508118 62508434 + 0 NA intron (ENSMUSG00000052062.14, intron 20 of 22) protein_coding-intron (ENSMUSG00000052062.14, intron 19 of 21) -9015 ENSMUSG00000085400.1 ENSMUSG00000085400 ENSMUST00000147177 Pard3bos3 antisense Interval_65468 chr16 22517371 22518742 + 0 NA TTS (ENSMUSG00000089874.1) antisense-TTS (ENSMUSG00000089874.1) 6576 ENSMUSG00000089874.1 ENSMUSG00000089874 ENSMUST00000159309 9230117E06Rik antisense Interval_139482 chr6 100462464 100463280 + 0 NA Intergenic Intergenic 31942 ENSMUSG00000087929.1 ENSMUSG00000087929 ENSMUST00000157304 Gm23234 snoRNA Interval_128033 chr5 110405784 110407095 + 0 NA intron (ENSMUSG00000043323.17, intron 4 of 17) protein_coding-intron (ENSMUSG00000043323.17, intron 4 of 18) -41550 ENSMUSG00000105482.1 ENSMUSG00000105482 ENSMUST00000196305 Gm42596 antisense Interval_157505 chr8 70949661 70949921 + 0 NA intron (ENSMUSG00000101854.2, intron 4 of 4) lincRNA-intron (ENSMUSG00000101854.2, intron 4 of 4) 18386 ENSMUSG00000074252.2 ENSMUSG00000074252 ENSMUST00000098653 Gm10654 TEC Interval_35898 chr12 31718548 31721265 + 0 NA intron (ENSMUSG00000035933.5, intron 6 of 22) protein_coding-intron (ENSMUSG00000035933.5, intron 6 of 22) -5980 ENSMUSG00000044067.7 ENSMUSG00000044067 ENSMUST00000174480 Gpr22 protein_coding Interval_157974 chr8 77478160 77479850 + 0 NA intron (ENSMUSG00000037148.8, intron 1 of 21) protein_coding-intron (ENSMUSG00000037148.8, intron 1 of 22) -38051 ENSMUSG00000097882.2 ENSMUSG00000097882 ENSMUST00000181420 0610038B21Rik antisense Interval_73798 chr17 43758259 43759041 + 0 NA Intergenic Intergenic 60287 ENSMUSG00000084474.1 ENSMUSG00000084474 ENSMUST00000122525 Gm25783 snRNA Interval_149083 chr7 92967316 92968244 + 0 NA Intergenic Intergenic -12096 ENSMUSG00000108994.1 ENSMUSG00000108994 ENSMUST00000207656 Gm31663 transcribed_unprocessed_pseudogene Interval_100716 chr2 171976361 171977318 + 0 NA Intergenic Intergenic 12356 ENSMUSG00000085426.1 ENSMUSG00000085426 ENSMUST00000133525 Gm14272 lincRNA Interval_65672 chr16 25025118 25026853 + 0 NA Intergenic Intergenic -33654 ENSMUSG00000096960.1 ENSMUSG00000096960 ENSMUST00000181655 A230028O05Rik lincRNA Interval_110973 chr4 10975941 10977313 + 0 NA Intergenic Intergenic 30019 ENSMUSG00000081715.1 ENSMUSG00000081715 ENSMUST00000117608 Rps11-ps3 processed_pseudogene Interval_35213 chr12 18237456 18238732 + 0 NA intron (ENSMUSG00000113956.1, intron 1 of 2) processed_pseudogene-intron (ENSMUSG00000113956.1, intron 1 of 2) 980 ENSMUSG00000113956.1 ENSMUSG00000113956 ENSMUST00000221258 Gm19368 processed_pseudogene Interval_81215 chr18 56537420 56538594 + 0 NA promoter-TSS (ENSMUSG00000053644.13) protein_coding-promoter-TSS (ENSMUSG00000053644.13) -132 ENSMUSG00000099196.1 ENSMUSG00000099196 ENSMUST00000183892 Mir1258 miRNA Interval_23752 chr11 25862403 25863870 + 0 NA intron (ENSMUSG00000032985.15, intron 2 of 2) protein_coding-intron (ENSMUSG00000032985.15, intron 2 of 6) -93995 ENSMUSG00000032985.15 ENSMUSG00000032985 ENSMUST00000125987 5730522E02Rik protein_coding Interval_35186 chr12 17890919 17892464 + 0 NA Intergenic Intergenic 3781 ENSMUSG00000113612.1 ENSMUSG00000113612 ENSMUST00000222538 Gm48315 processed_pseudogene Interval_55856 chr14 101560778 101561706 + 0 NA intron (ENSMUSG00000033083.16, intron 1 of 20) protein_coding-intron (ENSMUSG00000033083.16, intron 1 of 13) 11772 ENSMUSG00000115319.1 ENSMUSG00000115319 ENSMUST00000228293 Gm34417 processed_pseudogene Interval_128185 chr5 111591798 111592034 + 0 NA intron (ENSMUSG00000052848.7, intron 1 of 2) lincRNA-intron (ENSMUSG00000052848.7, intron 1 of 2) -1700 ENSMUSG00000104833.1 ENSMUSG00000104833 ENSMUST00000198964 Gm42489 lincRNA Interval_84806 chr19 16893527 16893767 + 0 NA intron (ENSMUSG00000118126.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000118126.1, intron 1 of 1) -19842 ENSMUSG00000056829.4 ENSMUSG00000056829 ENSMUST00000072915 Foxb2 protein_coding Interval_41155 chr12 111529304 111529649 + 0 NA Intergenic Intergenic -10103 ENSMUSG00000021282.17 ENSMUSG00000021282 ENSMUST00000221243 Eif5 protein_coding Interval_76721 chr17 83690181 83691199 + 0 NA Intergenic Intergenic -38474 ENSMUSG00000055817.18 ENSMUSG00000055817 ENSMUST00000175920 Mta3 protein_coding Interval_57104 chr15 6445662 6446101 + 0 NA intron (ENSMUSG00000022149.18, intron 1 of 10) protein_coding-intron (ENSMUSG00000022149.18, intron 1 of 10) 548 ENSMUSG00000022149.18 ENSMUSG00000022149 ENSMUST00000147905 C9 protein_coding Interval_66852 chr16 38128990 38129729 + 0 NA intron (ENSMUSG00000022812.14, intron 1 of 11) protein_coding-intron (ENSMUSG00000022812.14, intron 1 of 10) -28649 ENSMUSG00000095395.2 ENSMUSG00000095395 ENSMUST00000179548 Gm25617 snoRNA Interval_81880 chr18 65587027 65587604 + 0 NA intron (ENSMUSG00000042439.13, intron 1 of 1) protein_coding-intron (ENSMUSG00000042439.13, intron 2 of 5) 5869 ENSMUSG00000042439.13 ENSMUSG00000042439 ENSMUST00000183303 Zfp532 protein_coding Interval_63274 chr15 100041194 100042114 + 0 NA intron (ENSMUSG00000023026.16, intron 1 of 37) protein_coding-intron (ENSMUSG00000023026.16, intron 1 of 37) 50103 ENSMUSG00000116021.1 ENSMUSG00000116021 ENSMUST00000230449 Gm49474 TEC Interval_94853 chr2 97465956 97467533 + 0 NA promoter-TSS (ENSMUSG00000050587.14) protein_coding-promoter-TSS (ENSMUSG00000050587.14) -1345 ENSMUSG00000050587.14 ENSMUSG00000050587 ENSMUST00000170144 Lrrc4c protein_coding Interval_72871 chr17 32818776 32819069 + 0 NA exon (ENSMUSG00000095253.4, exon 3 of 3) protein_coding-exon (ENSMUSG00000095253.4, exon 3 of 3) 8778 ENSMUSG00000097030.1 ENSMUSG00000097030 ENSMUST00000181318 Gm26693 antisense Interval_154956 chr8 25267763 25268726 + 0 NA Intergenic Intergenic 38026 ENSMUSG00000110140.1 ENSMUSG00000110140 ENSMUST00000209774 5430421F17Rik lincRNA Interval_40769 chr12 108257622 108257897 + 0 NA intron (ENSMUSG00000084883.2, intron 1 of 5) protein_coding-intron (ENSMUSG00000084883.2, intron 1 of 6) 17666 ENSMUSG00000084883.2 ENSMUSG00000084883 ENSMUST00000136175 Ccdc85c protein_coding Interval_147486 chr7 67672404 67673224 + 0 NA TTS (ENSMUSG00000030555.16) protein_coding-TTS (ENSMUSG00000030555.16) 2762 ENSMUSG00000030555.16 ENSMUSG00000030555 ENSMUST00000154697 Ttc23 protein_coding Interval_133958 chr6 16601340 16602119 + 0 NA Intergenic Intergenic 51342 ENSMUSG00000108025.1 ENSMUSG00000108025 ENSMUST00000204284 Gm36503 lincRNA Interval_159347 chr8 93958659 93959096 + 0 NA exon (ENSMUSG00000031748.16, exon 8 of 8) protein_coding-exon (ENSMUSG00000031748.16, exon 8 of 8) -6919 ENSMUSG00000031748.16 ENSMUSG00000031748 ENSMUST00000212008 Gnao1 protein_coding Interval_84303 chr19 9954534 9954732 + 0 NA Intergenic Intergenic -11801 ENSMUSG00000118123.1 ENSMUSG00000118123 ENSMUST00000237966 Gm50346 TEC Interval_108830 chr3 132102979 132103885 + 0 NA intron (ENSMUSG00000028031.6, intron 1 of 3) protein_coding-intron (ENSMUSG00000028031.6, intron 1 of 3) 18140 ENSMUSG00000028031.6 ENSMUSG00000028031 ENSMUST00000029665 Dkk2 protein_coding Interval_19726 chr10 108323901 108324299 + 0 NA Intergenic Intergenic -8717 ENSMUSG00000035873.8 ENSMUSG00000035873 ENSMUST00000218332 Pawr protein_coding Interval_40135 chr12 101879908 101880134 + 0 NA intron (ENSMUSG00000021188.14, intron 5 of 14) protein_coding-intron (ENSMUSG00000021188.14, intron 11 of 20) 13072 ENSMUSG00000093758.1 ENSMUSG00000093758 ENSMUST00000176082 Gm20701 processed_pseudogene Interval_46394 chr13 64474141 64474716 + 0 NA intron (ENSMUSG00000113244.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000113244.1, intron 1 of 2) -15505 ENSMUSG00000113109.1 ENSMUSG00000113109 ENSMUST00000222331 Gm7712 transcribed_processed_pseudogene Interval_9692 chr1 161080630 161080923 + 0 NA intron (ENSMUSG00000026708.16, intron 4 of 4) protein_coding-intron (ENSMUSG00000026708.16, intron 3 of 3) 9760 ENSMUSG00000026708.16 ENSMUSG00000026708 ENSMUST00000155808 Cenpl protein_coding Interval_158478 chr8 83938793 83939303 + 0 NA TTS (ENSMUSG00000013033.16) protein_coding-TTS (ENSMUSG00000013033.16) -4991 ENSMUSG00000074219.3 ENSMUSG00000074219 ENSMUST00000238531 Gm10644 bidirectional_promoter_lncRNA Interval_80888 chr18 49945456 49945789 + 0 NA intron (ENSMUSG00000037416.13, intron 37 of 42) protein_coding-intron (ENSMUSG00000037416.13, intron 37 of 42) 22909 ENSMUSG00000037416.13 ENSMUSG00000037416 ENSMUST00000181042 Dmxl1 protein_coding Interval_141289 chr6 126921263 126922286 + 0 NA promoter-TSS (ENSMUSG00000030345.16) protein_coding-promoter-TSS (ENSMUSG00000030345.16) -9914 ENSMUSG00000106878.1 ENSMUSG00000106878 ENSMUST00000200859 Gm17808 processed_pseudogene Interval_106085 chr3 92789021 92790309 + 0 NA promoter-TSS (ENSMUSG00000068887.4) protein_coding-promoter-TSS (ENSMUSG00000068887.4) 849 ENSMUSG00000068887.4 ENSMUSG00000068887 ENSMUST00000107304 Lce1j protein_coding Interval_35421 chr12 21494748 21495287 + 0 NA Intergenic Intergenic -48290 ENSMUSG00000109975.1 ENSMUSG00000109975 ENSMUST00000209258 Gm19196 transcribed_unprocessed_pseudogene Interval_78331 chr18 12019111 12019764 + 0 NA intron (ENSMUSG00000049411.15, intron 14 of 15) protein_coding-intron (ENSMUSG00000049411.15, intron 11 of 12) 102043 ENSMUSG00000049411.15 ENSMUSG00000049411 ENSMUST00000234833 Tmem241 protein_coding Interval_167470 chr9 69667987 69671027 + 0 NA Intergenic Intergenic -69753 ENSMUSG00000111096.1 ENSMUSG00000111096 ENSMUST00000215589 Gm47203 processed_pseudogene Interval_54914 chr14 76188647 76188990 + 0 NA Intergenic Intergenic 48727 ENSMUSG00000095427.2 ENSMUSG00000095427 ENSMUST00000095471 Rps2-ps6 processed_pseudogene Interval_100703 chr2 171829957 171830380 + 0 NA Intergenic Intergenic 131963 ENSMUSG00000086823.7 ENSMUSG00000086823 ENSMUST00000125465 1700028P15Rik processed_transcript Interval_9186 chr1 154883792 154884279 + 0 NA promoter-TSS (ENSMUSG00000004110.17) protein_coding-promoter-TSS (ENSMUSG00000004110.17) -67094 ENSMUSG00000004110.17 ENSMUSG00000004110 ENSMUST00000186256 Cacna1e protein_coding Interval_130175 chr5 124755664 124755907 + 0 NA exon (ENSMUSG00000038011.15, exon 17 of 79) protein_coding-exon (ENSMUSG00000038011.15, exon 17 of 79) -30706 ENSMUSG00000106082.4 ENSMUSG00000106082 ENSMUST00000199356 4930404A12Rik antisense Interval_123363 chr5 31775430 31775747 + 0 NA intron (ENSMUSG00000052139.18, intron 5 of 6) protein_coding-intron (ENSMUSG00000052139.18, intron 5 of 13) 67192 ENSMUSG00000107151.1 ENSMUSG00000107151 ENSMUST00000201018 Gm43810 TEC Interval_13834 chr10 23541904 23542478 + 0 NA Intergenic Intergenic 67240 ENSMUSG00000111894.1 ENSMUSG00000111894 ENSMUST00000219823 Gm47843 lincRNA Interval_145565 chr7 35640297 35641126 + 0 NA Intergenic Intergenic 2333 ENSMUSG00000030417.15 ENSMUSG00000030417 ENSMUST00000130340 Pdcd5 protein_coding Interval_60285 chr15 72271182 72271404 + 0 NA intron (ENSMUSG00000116068.1, intron 3 of 3) lincRNA-intron (ENSMUSG00000116068.1, intron 3 of 3) -15837 ENSMUSG00000095129.1 ENSMUSG00000095129 ENSMUST00000178482 Gm23217 snRNA Interval_51977 chr14 34378110 34379537 + 0 NA intron (ENSMUSG00000041445.9, intron 1 of 4) protein_coding-intron (ENSMUSG00000041445.9, intron 1 of 6) 3102 ENSMUSG00000041445.9 ENSMUSG00000041445 ENSMUST00000227130 Mmrn2 protein_coding Interval_96531 chr2 125411069 125412920 + 0 NA intron (ENSMUSG00000027204.13, intron 6 of 9) protein_coding-intron (ENSMUSG00000027204.13, intron 7 of 65) -93095 ENSMUSG00000053615.1 ENSMUSG00000053615 ENSMUST00000066157 Gm9913 antisense Interval_173569 chrX 99556158 99557677 + 0 NA Intergenic Intergenic -86182 ENSMUSG00000034403.16 ENSMUSG00000034403 ENSMUST00000113797 Pja1 protein_coding Interval_49476 chr13 112308471 112308893 + 0 NA intron (ENSMUSG00000049985.15, intron 1 of 5) protein_coding-intron (ENSMUSG00000049985.15, intron 1 of 10) 17561 ENSMUSG00000088991.1 ENSMUSG00000088991 ENSMUST00000158366 Gm22768 snRNA Interval_105117 chr3 81717877 81718073 + 0 NA Intergenic Intergenic -3701 ENSMUSG00000104732.1 ENSMUSG00000104732 ENSMUST00000198290 Gm43346 lincRNA Interval_27529 chr11 68437912 68438892 + 0 NA intron (ENSMUSG00000020901.13, intron 1 of 3) protein_coding-intron (ENSMUSG00000020901.13, intron 1 of 18) -37079 ENSMUSG00000020901.13 ENSMUSG00000020901 ENSMUST00000155887 Pik3r5 protein_coding Interval_87437 chr19 50643930 50644530 + 0 NA intron (ENSMUSG00000043531.16, intron 1 of 26) protein_coding-intron (ENSMUSG00000043531.16, intron 1 of 26) -33176 ENSMUSG00000097446.1 ENSMUSG00000097446 ENSMUST00000180848 Gm26629 antisense Interval_147077 chr7 61182127 61183449 + 0 NA intron (ENSMUSG00000068151.7, intron 4 of 5) lincRNA-intron (ENSMUSG00000068151.7, intron 4 of 5) -52104 ENSMUSG00000108917.1 ENSMUSG00000108917 ENSMUST00000208329 Gm38451 TEC Interval_136714 chr6 58464386 58465816 + 0 NA intron (ENSMUSG00000107960.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000107960.1, intron 1 of 1) 3994 ENSMUSG00000093747.1 ENSMUSG00000093747 ENSMUST00000177167 Gm20673 processed_pseudogene Interval_68975 chr16 89867298 89868083 + 0 NA exon (ENSMUSG00000002489.16, exon 7 of 28) protein_coding-exon (ENSMUSG00000002489.16, exon 7 of 28) -72408 ENSMUSG00000002489.16 ENSMUSG00000002489 ENSMUST00000136760 Tiam1 protein_coding Interval_81676 chr18 63238462 63239699 + 0 NA intron (ENSMUSG00000041482.17, intron 3 of 50) protein_coding-intron (ENSMUSG00000041482.17, intron 2 of 7) -26010 ENSMUSG00000118336.1 ENSMUSG00000118336 ENSMUST00000235825 Gm50172 TEC Interval_105707 chr3 88679006 88679467 + 0 NA Intergenic Intergenic 7161 ENSMUSG00000105512.1 ENSMUSG00000105512 ENSMUST00000198351 Gm43714 antisense Interval_148967 chr7 90475605 90476765 + 0 NA promoter-TSS (ENSMUSG00000030614.8) protein_coding-promoter-TSS (ENSMUSG00000030614.8) -190 ENSMUSG00000030614.8 ENSMUSG00000030614 ENSMUST00000123622 Tmem126b protein_coding Interval_5120 chr1 85812447 85812665 + 0 NA intron (ENSMUSG00000036707.16, intron 2 of 9) protein_coding-intron (ENSMUSG00000036707.16, intron 2 of 9) 27843 ENSMUSG00000092932.2 ENSMUSG00000092932 ENSMUST00000175191 Gm22906 misc_RNA Interval_39903 chr12 99550798 99551014 + 0 NA intron (ENSMUSG00000033713.12, intron 1 of 2) protein_coding-intron (ENSMUSG00000033713.12, intron 1 of 2) 12630 ENSMUSG00000033713.12 ENSMUSG00000033713 ENSMUST00000221283 Foxn3 protein_coding Interval_107416 chr3 107450945 107451231 + 0 NA intron (ENSMUSG00000027895.10, intron 1 of 3) protein_coding-intron (ENSMUSG00000027895.10, intron 1 of 3) 8464 ENSMUSG00000027895.10 ENSMUSG00000027895 ENSMUST00000238670 Kcnc4 protein_coding Interval_75618 chr17 69382215 69384543 + 0 NA promoter-TSS (ENSMUSG00000049672.15) protein_coding-promoter-TSS (ENSMUSG00000049672.15) -461 ENSMUSG00000049672.15 ENSMUSG00000049672 ENSMUST00000112676 Zbtb14 protein_coding Interval_119488 chr4 137891488 137893087 + 0 NA intron (ENSMUSG00000057530.14, intron 1 of 1) protein_coding-intron (ENSMUSG00000057530.14, intron 1 of 19) -8350 ENSMUSG00000085823.7 ENSMUSG00000085823 ENSMUST00000156022 Gm13012 antisense Interval_64918 chr16 17197393 17198887 + 0 NA intron (ENSMUSG00000038965.17, intron 1 of 4) protein_coding-intron (ENSMUSG00000038965.17, intron 1 of 3) 3319 ENSMUSG00000038965.17 ENSMUSG00000038965 ENSMUST00000231557 Ube2l3 protein_coding Interval_37 GL456211.1 199088 200240 + 0 NA NA NA NA NA Interval_126055 chr5 77136352 77137286 + 0 NA Intergenic Intergenic 3433 ENSMUSG00000106783.1 ENSMUSG00000106783 ENSMUST00000201649 Chaer1 lincRNA Interval_50698 chr14 18326548 18327689 + 0 NA exon (ENSMUSG00000021774.13, exon 1 of 3) protein_coding-exon (ENSMUSG00000021774.13, exon 1 of 3) 4626 ENSMUSG00000021774.13 ENSMUSG00000021774 ENSMUST00000161580 Ube2e1 protein_coding Interval_157157 chr8 66581543 66582880 + 0 NA Intergenic Intergenic 6797 ENSMUSG00000085082.1 ENSMUSG00000085082 ENSMUST00000128324 Gm16330 processed_pseudogene Interval_17506 chr10 77300669 77301136 + 0 NA intron (ENSMUSG00000020262.15, intron 9 of 10) protein_coding-intron (ENSMUSG00000020262.15, intron 9 of 10) 38454 ENSMUSG00000020260.9 ENSMUSG00000020260 ENSMUST00000218117 Pofut2 protein_coding Interval_167279 chr9 66999814 67001789 + 0 NA Intergenic Intergenic -19616 ENSMUSG00000089450.1 ENSMUSG00000089450 ENSMUST00000158825 Gm24225 snRNA Interval_80199 chr18 38189058 38189903 + 0 NA exon (ENSMUSG00000051375.15, exon 5 of 5) protein_coding-exon (ENSMUSG00000051375.15, exon 5 of 5) 14360 ENSMUSG00000051375.15 ENSMUSG00000051375 ENSMUST00000193828 Pcdh1 protein_coding Interval_164212 chr9 32589823 32590168 + 0 NA Intergenic Intergenic -23457 ENSMUSG00000110844.1 ENSMUSG00000110844 ENSMUST00000214084 Gm47680 lincRNA Interval_111071 chr4 11622511 11622879 + 0 NA Intergenic Intergenic -7688 ENSMUSG00000086103.1 ENSMUSG00000086103 ENSMUST00000148576 Gm11832 antisense Interval_174813 chrX 167276588 167277185 + 0 NA Intergenic Intergenic -12587 ENSMUSG00000040522.5 ENSMUSG00000040522 ENSMUST00000138311 Tlr8 protein_coding Interval_20601 chr10 119311359 119311573 + 0 NA Intergenic Intergenic -8768 ENSMUSG00000112155.1 ENSMUSG00000112155 ENSMUST00000218762 4930477N07Rik lincRNA Interval_82608 chr18 75410241 75410668 + 0 NA Intergenic Intergenic 41464 ENSMUSG00000025880.11 ENSMUSG00000025880 ENSMUST00000172718 Smad7 protein_coding Interval_67143 chr16 43875816 43876739 + 0 NA TTS (ENSMUSG00000022704.16) protein_coding-TTS (ENSMUSG00000022704.16) 4936 ENSMUSG00000022704.16 ENSMUSG00000022704 ENSMUST00000124674 Qtrt2 protein_coding Interval_162851 chr9 10350994 10351631 + 0 NA intron (ENSMUSG00000039488.15, intron 3 of 24) protein_coding-intron (ENSMUSG00000039488.15, intron 1 of 22) -56156 ENSMUSG00000096815.1 ENSMUSG00000096815 ENSMUST00000179931 Gm25086 miRNA Interval_96687 chr2 127166261 127166430 + 0 NA Intergenic Intergenic -23755 ENSMUSG00000074825.4 ENSMUSG00000074825 ENSMUST00000154021 Itpripl1 protein_coding Interval_93215 chr2 71211183 71212519 + 0 NA promoter-TSS (ENSMUSG00000027012.15) protein_coding-promoter-TSS (ENSMUSG00000027012.15) -153 ENSMUSG00000027012.15 ENSMUSG00000027012 ENSMUST00000138613 Dync1i2 protein_coding Interval_11574 chr1 182849883 182850696 + 0 NA intron (ENSMUSG00000038576.15, intron 3 of 3) protein_coding-intron (ENSMUSG00000038576.15, intron 2 of 7) -57421 ENSMUSG00000102291.1 ENSMUSG00000102291 ENSMUST00000192563 Gm37542 TEC Interval_354 chr1 4478602 4480225 + 0 NA Intergenic Intergenic 17344 ENSMUSG00000025902.13 ENSMUSG00000025902 ENSMUST00000192913 Sox17 protein_coding Interval_18749 chr10 89941739 89942504 + 0 NA intron (ENSMUSG00000058589.14, intron 1 of 16) protein_coding-intron (ENSMUSG00000058589.14, intron 1 of 17) 68612 ENSMUSG00000058589.14 ENSMUSG00000058589 ENSMUST00000183024 Anks1b protein_coding Interval_31927 chr11 103910620 103912057 + 0 NA intron (ENSMUSG00000034187.18, intron 7 of 8) protein_coding-intron (ENSMUSG00000034187.18, intron 7 of 20) -31095 ENSMUSG00000092540.1 ENSMUSG00000092540 ENSMUST00000172606 Gm8738 processed_pseudogene Interval_142500 chr6 142890083 142890746 + 0 NA intron (ENSMUSG00000030283.7, intron 2 of 4) protein_coding-intron (ENSMUSG00000030283.7, intron 2 of 4) 73727 ENSMUSG00000030283.7 ENSMUSG00000030283 ENSMUST00000147058 St8sia1 protein_coding Interval_114001 chr4 62378615 62379290 + 0 NA intron (ENSMUSG00000066150.12, intron 1 of 4) protein_coding-intron (ENSMUSG00000066150.12, intron 1 of 4) -6549 ENSMUSG00000066150.12 ENSMUSG00000066150 ENSMUST00000122092 Slc31a1 protein_coding Interval_121152 chr4 153558259 153560433 + 0 NA Intergenic Intergenic -77167 ENSMUSG00000039546.9 ENSMUSG00000039546 ENSMUST00000149177 Ajap1 protein_coding Interval_140981 chr6 123784008 123785145 + 0 NA intron (ENSMUSG00000072780.3, intron 2 of 4) protein_coding-intron (ENSMUSG00000072780.3, intron 2 of 5) 5697 ENSMUSG00000072780.3 ENSMUSG00000072780 ENSMUST00000232985 Vmn2r24 protein_coding Interval_129791 chr5 122377243 122377570 + 0 NA promoter-TSS (ENSMUSG00000104916.1) TEC-promoter-TSS (ENSMUSG00000104916.1) -2 ENSMUSG00000104916.1 ENSMUSG00000104916 ENSMUST00000196642 Gm42830 TEC Interval_161051 chr8 117173772 117174481 + 0 NA intron (ENSMUSG00000052557.11, intron 1 of 10) protein_coding-intron (ENSMUSG00000052557.11, intron 1 of 10) 15989 ENSMUSG00000052557.11 ENSMUSG00000052557 ENSMUST00000162997 Gan protein_coding Interval_65523 chr16 23072472 23073440 + 0 NA intron (ENSMUSG00000022875.18, intron 5 of 10) protein_coding-intron (ENSMUSG00000022875.18, intron 5 of 9) 15091 ENSMUSG00000022875.18 ENSMUSG00000022875 ENSMUST00000089902 Kng1 protein_coding Interval_2906 chr1 49185652 49185959 + 0 NA Intergenic Intergenic -12431 ENSMUSG00000099698.1 ENSMUSG00000099698 ENSMUST00000186142 Gm28740 processed_pseudogene Interval_114575 chr4 82609885 82610377 + 0 NA intron (ENSMUSG00000008575.17, intron 1 of 1) protein_coding-intron (ENSMUSG00000008575.17, intron 1 of 1) -22812 ENSMUSG00000084851.1 ENSMUSG00000084851 ENSMUST00000137477 Gm11267 sense_intronic Interval_77107 chr17 86615692 86616865 + 0 NA intron (ENSMUSG00000045038.14, intron 11 of 14) protein_coding-intron (ENSMUSG00000045038.14, intron 12 of 15) 69218 ENSMUSG00000117568.1 ENSMUSG00000117568 ENSMUST00000234033 Gm18832 processed_pseudogene Interval_18882 chr10 92288855 92290653 + 0 NA intron (ENSMUSG00000098040.1, intron 2 of 8) lincRNA-intron (ENSMUSG00000098040.1, intron 2 of 8) 31164 ENSMUSG00000111776.1 ENSMUSG00000111776 ENSMUST00000215960 Gm47124 processed_pseudogene Interval_3342 chr1 57281387 57282230 + 0 NA Intergenic Intergenic 10593 ENSMUSG00000101129.1 ENSMUSG00000101129 ENSMUST00000188353 Gm5254 processed_pseudogene Interval_39460 chr12 87782764 87783779 + 0 NA exon (ENSMUSG00000112949.1, exon 1 of 1) processed_pseudogene-exon (ENSMUSG00000112949.1, exon 1 of 1) 2128 ENSMUSG00000112949.1 ENSMUSG00000112949 ENSMUST00000221137 Gm21939 processed_pseudogene Interval_20792 chr10 120966381 120968691 + 0 NA intron (ENSMUSG00000048661.14, intron 1 of 12) protein_coding-intron (ENSMUSG00000048661.14, intron 1 of 13) 6889 ENSMUSG00000093030.1 ENSMUSG00000093030 ENSMUST00000175289 Gm23632 miRNA Interval_125362 chr5 66445716 66445908 + 0 NA intron (ENSMUSG00000029207.16, intron 5 of 5) protein_coding-intron (ENSMUSG00000029207.16, intron 5 of 17) -1389 ENSMUSG00000106772.1 ENSMUSG00000106772 ENSMUST00000200971 Gm43794 TEC Interval_21365 chr10 128180031 128180327 + 0 NA exon (ENSMUSG00000040043.17, exon 1 of 14) protein_coding-exon (ENSMUSG00000040043.17, exon 1 of 14) 118 ENSMUSG00000040043.17 ENSMUSG00000040043 ENSMUST00000218884 Rbms2 protein_coding Interval_49550 chr13 112869578 112870972 + 0 NA intron (ENSMUSG00000016018.4, intron 1 of 3) protein_coding-intron (ENSMUSG00000016018.4, intron 25 of 26) -13951 ENSMUSG00000098067.1 ENSMUSG00000098067 ENSMUST00000182295 Gm26943 processed_pseudogene Interval_47316 chr13 81238811 81239089 + 0 NA TTS (ENSMUSG00000114939.1) TEC-TTS (ENSMUSG00000114939.1) 1834 ENSMUSG00000114939.1 ENSMUSG00000114939 ENSMUST00000225657 Gm48566 TEC Interval_83084 chr18 81160754 81161623 + 0 NA Intergenic Intergenic 74878 ENSMUSG00000097181.1 ENSMUSG00000097181 ENSMUST00000181204 4930594M17Rik lincRNA Interval_13724 chr10 21420948 21421509 + 0 NA intron (ENSMUSG00000037535.5, intron 2 of 3) lincRNA-intron (ENSMUSG00000037535.5, intron 1 of 1) 1870 ENSMUSG00000037535.5 ENSMUSG00000037535 ENSMUST00000042671 1700021A07Rik lincRNA Interval_163870 chr9 27326051 27326954 + 0 NA promoter-TSS (ENSMUSG00000034275.18) protein_coding-promoter-TSS (ENSMUSG00000034275.18) 27298 ENSMUSG00000034275.18 ENSMUSG00000034275 ENSMUST00000214187 Igsf9b protein_coding Interval_120591 chr4 149562383 149562942 + 0 NA intron (ENSMUSG00000028988.13, intron 3 of 3) protein_coding-intron (ENSMUSG00000028988.13, intron 4 of 4) 5128 ENSMUSG00000086949.1 ENSMUSG00000086949 ENSMUST00000145263 Gm13066 antisense Interval_37607 chr12 70267596 70268104 + 0 NA exon (ENSMUSG00000021071.17, exon 7 of 7) protein_coding-exon (ENSMUSG00000021071.17, exon 7 of 7) -10723 ENSMUSG00000021071.17 ENSMUSG00000021071 ENSMUST00000220557 Trim9 protein_coding Interval_122110 chr5 17144301 17144579 + 0 NA Intergenic Intergenic 83494 ENSMUSG00000091273.1 ENSMUSG00000091273 ENSMUST00000166114 Gm6673 unprocessed_pseudogene Interval_6575 chr1 117376013 117376682 + 0 NA Intergenic Intergenic 17185 ENSMUSG00000101154.1 ENSMUSG00000101154 ENSMUST00000189740 Gm17777 processed_pseudogene Interval_167981 chr9 75234308 75234672 + 0 NA intron (ENSMUSG00000033590.8, intron 1 of 29) protein_coding-intron (ENSMUSG00000033590.8, intron 1 of 40) 2414 ENSMUSG00000033590.8 ENSMUSG00000033590 ENSMUST00000216529 Myo5c protein_coding Interval_86467 chr19 40805033 40805611 + 0 NA intron (ENSMUSG00000108929.2, intron 19 of 25) protein_coding-intron (ENSMUSG00000108929.2, intron 19 of 25) -25986 ENSMUSG00000025010.14 ENSMUSG00000025010 ENSMUST00000119316 Ccnj protein_coding Interval_65089 chr16 18953910 18954175 + 0 NA exon (ENSMUSG00000022702.16, exon 22 of 25) protein_coding-exon (ENSMUSG00000022702.16, exon 22 of 25) -9377 ENSMUSG00000083658.1 ENSMUSG00000083658 ENSMUST00000120082 Gm15798 processed_pseudogene Interval_142869 chr6 146597217 146597488 + 0 NA TTS (ENSMUSG00000040242.14) protein_coding-TTS (ENSMUSG00000040242.14) 19412 ENSMUSG00000040242.14 ENSMUSG00000040242 ENSMUST00000160697 Fgfr1op2 protein_coding Interval_28284 chr11 74881660 74882695 + 0 NA intron (ENSMUSG00000038351.14, intron 2 of 23) protein_coding-intron (ENSMUSG00000038351.14, intron 2 of 22) -13085 ENSMUSG00000038351.14 ENSMUSG00000038351 ENSMUST00000148421 Sgsm2 protein_coding Interval_84337 chr19 10198065 10199049 + 0 NA promoter-TSS (ENSMUSG00000064032.2) antisense-promoter-TSS (ENSMUSG00000064032.2) 189 ENSMUSG00000064032.2 ENSMUSG00000064032 ENSMUST00000081739 Gm10143 antisense Interval_1845 chr1 34108720 34109622 + 0 NA intron (ENSMUSG00000026131.20, intron 1 of 3) protein_coding-intron (ENSMUSG00000026131.20, intron 2 of 97) -8188 ENSMUSG00000105982.1 ENSMUSG00000105982 ENSMUST00000198033 Mir6896 miRNA Interval_50306 chr14 11751980 11752193 + 0 NA intron (ENSMUSG00000021745.14, intron 2 of 3) protein_coding-intron (ENSMUSG00000021745.14, intron 2 of 29) -15857 ENSMUSG00000114310.1 ENSMUSG00000114310 ENSMUST00000225152 Gm48602 TEC Interval_135538 chr6 40141152 40141995 + 0 NA intron (ENSMUSG00000057716.7, intron 1 of 2) protein_coding-intron (ENSMUSG00000057716.7, intron 1 of 2) 22794 ENSMUSG00000097563.1 ENSMUSG00000097563 ENSMUST00000181762 Gm26638 sense_intronic Interval_79304 chr18 30308769 30309065 + 0 NA intron (ENSMUSG00000033628.15, intron 13 of 24) protein_coding-intron (ENSMUSG00000033628.15, intron 13 of 23) 35990 ENSMUSG00000033628.15 ENSMUSG00000033628 ENSMUST00000131405 Pik3c3 protein_coding Interval_37700 chr12 71206627 71207118 + 0 NA intron (ENSMUSG00000034601.17, intron 27 of 27) protein_coding-intron (ENSMUSG00000034601.17, intron 27 of 27) -1428 ENSMUSG00000113878.1 ENSMUSG00000113878 ENSMUST00000222488 Gm19045 processed_pseudogene Interval_143365 chr7 6148043 6148808 + 0 NA intron (ENSMUSG00000046792.8, intron 1 of 1) protein_coding-intron (ENSMUSG00000046792.8, intron 1 of 2) -5580 ENSMUSG00000046792.8 ENSMUSG00000046792 ENSMUST00000208746 Zfp787 protein_coding Interval_19809 chr10 109480054 109480706 + 0 NA Intergenic Intergenic -93893 ENSMUSG00000112253.1 ENSMUSG00000112253 ENSMUST00000219849 Gm47329 processed_pseudogene Interval_100140 chr2 167299001 167300028 + 0 NA exon (ENSMUSG00000017929.13, exon 9 of 9) protein_coding-exon (ENSMUSG00000017929.13, exon 9 of 9) 14341 ENSMUSG00000017929.13 ENSMUSG00000017929 ENSMUST00000133557 B4galt5 protein_coding Interval_14530 chr10 35000039 35001302 + 0 NA intron (ENSMUSG00000111042.1, intron 2 of 3) transcribed_processed_pseudogene-intron (ENSMUSG00000111042.1, intron 2 of 3) 102414 ENSMUSG00000110935.1 ENSMUSG00000110935 ENSMUST00000216459 Gm8834 processed_pseudogene Interval_67775 chr16 57110880 57111672 + 0 NA Intergenic Intergenic -39924 ENSMUSG00000046748.8 ENSMUSG00000046748 ENSMUST00000227043 Tmem45a2 protein_coding Interval_147587 chr7 68646773 68647546 + 0 NA Intergenic Intergenic 28321 ENSMUSG00000094854.3 ENSMUSG00000094854 ENSMUST00000187472 Gm5334 processed_pseudogene Interval_158377 chr8 83177577 83178875 + 0 NA intron (ENSMUSG00000031709.15, intron 1 of 20) protein_coding-intron (ENSMUSG00000031709.15, intron 1 of 17) -12056 ENSMUSG00000074228.3 ENSMUSG00000074228 ENSMUST00000238241 Gm10645 TEC Interval_67949 chr16 60436547 60436971 + 0 NA intron (ENSMUSG00000055540.15, intron 2 of 2) protein_coding-intron (ENSMUSG00000055540.15, intron 2 of 17) -38437 ENSMUSG00000087636.1 ENSMUSG00000087636 ENSMUST00000131499 Gm4660 processed_pseudogene Interval_109266 chr3 138505384 138505626 + 0 NA Intergenic Intergenic -1293 ENSMUSG00000106462.1 ENSMUSG00000106462 ENSMUST00000200122 Gm43725 processed_pseudogene Interval_147511 chr7 67866330 67866561 + 0 NA Intergenic Intergenic -16813 ENSMUSG00000109193.1 ENSMUSG00000109193 ENSMUST00000208560 Gm39027 lincRNA Interval_54156 chr14 65795948 65797023 + 0 NA Intergenic Intergenic -9452 ENSMUSG00000022033.9 ENSMUSG00000022033 ENSMUST00000139644 Pbk protein_coding Interval_13674 chr10 20919933 20920176 + 0 NA Intergenic Intergenic -41081 ENSMUSG00000111177.1 ENSMUSG00000111177 ENSMUST00000213102 Rps2-ps3 processed_pseudogene Interval_121388 chr4 155463138 155463889 + 0 NA exon (ENSMUSG00000078490.10, exon 11 of 17) protein_coding-exon (ENSMUSG00000078490.10, exon 11 of 17) -5601 ENSMUSG00000023153.9 ENSMUSG00000023153 ENSMUST00000145796 Tmem52 protein_coding Interval_79426 chr18 31833059 31833534 + 0 NA intron (ENSMUSG00000024400.16, intron 4 of 7) protein_coding-intron (ENSMUSG00000024400.16, intron 4 of 21) -12777 ENSMUSG00000091561.3 ENSMUSG00000091561 ENSMUST00000165131 Gm6665 processed_pseudogene Interval_96476 chr2 124609724 124611030 + 0 NA promoter-TSS (ENSMUSG00000027200.17) protein_coding-promoter-TSS (ENSMUSG00000027200.17) -98278 ENSMUSG00000087450.1 ENSMUSG00000087450 ENSMUST00000137397 Gm13994 lincRNA Interval_85788 chr19 31171040 31171860 + 0 NA intron (ENSMUSG00000052920.16, intron 3 of 17) protein_coding-intron (ENSMUSG00000052920.16, intron 3 of 17) 58904 ENSMUSG00000118011.1 ENSMUSG00000118011 ENSMUST00000235353 Gm50266 processed_pseudogene Interval_73200 chr17 35543443 35543774 + 0 NA Intergenic Intergenic -8520 ENSMUSG00000039518.7 ENSMUSG00000039518 ENSMUST00000044804 Cdsn protein_coding Interval_94075 chr2 83669584 83670531 + 0 NA Intergenic Intergenic 13437 ENSMUSG00000027091.14 ENSMUSG00000027091 ENSMUST00000134789 Zc3h15 protein_coding Interval_151936 chr7 127656771 127657556 + 0 NA exon (ENSMUSG00000108766.1, exon 1 of 1) TEC-exon (ENSMUSG00000108766.1, exon 1 of 1) 1071 ENSMUSG00000108766.1 ENSMUSG00000108766 ENSMUST00000206375 Gm44760 TEC Interval_113349 chr4 53698787 53699061 + 0 NA intron (ENSMUSG00000054752.16, intron 12 of 12) protein_coding-intron (ENSMUSG00000054752.16, intron 12 of 12) -15239 ENSMUSG00000028414.17 ENSMUSG00000028414 ENSMUST00000061771 Fktn protein_coding Interval_6998 chr1 121662034 121662293 + 0 NA Intergenic Intergenic -16314 ENSMUSG00000102006.1 ENSMUSG00000102006 ENSMUST00000185259 Gm28591 processed_pseudogene Interval_173126 chrX 72992266 72993147 + 0 NA TTS (ENSMUSG00000089357.1) miRNA-TTS (ENSMUSG00000089357.1) 627 ENSMUSG00000089357.1 ENSMUSG00000089357 ENSMUST00000158732 Mir2137 miRNA Interval_42264 chr13 11291658 11292278 + 0 NA Intergenic Intergenic 134930 ENSMUSG00000077618.1 ENSMUSG00000077618 ENSMUST00000104430 Gm25496 snoRNA Interval_6695 chr1 118839526 118840432 + 0 NA intron (ENSMUSG00000048402.14, intron 13 of 13) protein_coding-intron (ENSMUSG00000048402.14, intron 13 of 13) 29843 ENSMUSG00000100040.1 ENSMUSG00000100040 ENSMUST00000190981 Gm28467 processed_pseudogene Interval_136954 chr6 65060252 65061888 + 0 NA intron (ENSMUSG00000029920.9, intron 3 of 3) protein_coding-intron (ENSMUSG00000029920.9, intron 5 of 23) 18403 ENSMUSG00000029920.9 ENSMUSG00000029920 ENSMUST00000203104 Smarcad1 protein_coding Interval_50562 chr14 15509486 15510067 + 0 NA Intergenic Intergenic 53445 ENSMUSG00000114266.1 ENSMUSG00000114266 ENSMUST00000224637 Gm10403 TEC Interval_82875 chr18 78134299 78134725 + 0 NA intron (ENSMUSG00000059336.14, intron 1 of 8) protein_coding-intron (ENSMUSG00000059336.14, intron 1 of 8) 7607 ENSMUSG00000059336.14 ENSMUSG00000059336 ENSMUST00000160639 Slc14a1 protein_coding Interval_150123 chr7 107045530 107046403 + 0 NA Intergenic Intergenic 14792 ENSMUSG00000073898.3 ENSMUSG00000073898 ENSMUST00000098139 Olfr713 protein_coding Interval_64203 chr16 9106353 9106888 + 0 NA intron (ENSMUSG00000116348.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000116469.1, intron 1 of 2) 1150 ENSMUSG00000116348.1 ENSMUSG00000116348 ENSMUST00000231156 Gm18722 processed_pseudogene Interval_97372 chr2 135547775 135548668 + 0 NA intron (ENSMUSG00000085631.1, intron 1 of 1) antisense-intron (ENSMUSG00000085631.1, intron 1 of 1) 35363 ENSMUSG00000085631.1 ENSMUSG00000085631 ENSMUST00000129868 9630028H03Rik antisense Interval_148184 chr7 79692102 79692510 + 0 NA intron (ENSMUSG00000046591.10, intron 19 of 20) protein_coding-intron (ENSMUSG00000046591.10, intron 19 of 21) -18065 ENSMUSG00000039133.8 ENSMUSG00000039133 ENSMUST00000197011 9330171B17Rik antisense Interval_98449 chr2 152437284 152437952 + 0 NA exon (ENSMUSG00000032680.11, exon 6 of 12) protein_coding-exon (ENSMUSG00000032680.11, exon 6 of 12) 9983 ENSMUSG00000032680.11 ENSMUSG00000032680 ENSMUST00000128737 6820408C15Rik protein_coding Interval_15536 chr10 50894118 50895590 + 0 NA promoter-TSS (ENSMUSG00000019913.4) protein_coding-promoter-TSS (ENSMUSG00000019913.4) 100 ENSMUSG00000019913.4 ENSMUSG00000019913 ENSMUST00000020071 Sim1 protein_coding Interval_73481 chr17 37863651 37864512 + 0 NA Intergenic Intergenic 3274 ENSMUSG00000092458.1 ENSMUSG00000092458 ENSMUST00000173594 Gm18737 processed_pseudogene Interval_56302 chr14 116917132 116917346 + 0 NA Intergenic Intergenic -8292 ENSMUSG00000058571.11 ENSMUSG00000058571 ENSMUST00000078849 Gpc6 protein_coding Interval_117618 chr4 125084527 125085826 + 0 NA promoter-TSS (ENSMUSG00000028863.13) protein_coding-promoter-TSS (ENSMUSG00000028863.13) 12 ENSMUSG00000028863.13 ENSMUSG00000028863 ENSMUST00000155212 Meaf6 protein_coding Interval_71182 chr17 20967791 20968101 + 0 NA Intergenic Intergenic 1538 ENSMUSG00000093429.1 ENSMUSG00000093429 ENSMUST00000175863 Vmn1r-ps145 unprocessed_pseudogene Interval_130940 chr5 134168048 134168323 + 0 NA promoter-TSS (ENSMUSG00000061979.8) protein_coding-promoter-TSS (ENSMUSG00000061979.8) 75 ENSMUSG00000061979.8 ENSMUSG00000061979 ENSMUST00000156574 Rcc1l protein_coding Interval_123799 chr5 35595495 35596248 + 0 NA intron (ENSMUSG00000029098.17, intron 8 of 18) protein_coding-intron (ENSMUSG00000029098.17, intron 8 of 18) -7108 ENSMUSG00000055061.5 ENSMUSG00000055061 ENSMUST00000124643 4931431C16Rik antisense Interval_82169 chr18 68258411 68258637 + 0 NA intron (ENSMUSG00000024544.9, intron 2 of 5) protein_coding-intron (ENSMUSG00000024544.9, intron 2 of 5) 2449 ENSMUSG00000098253.1 ENSMUSG00000098253 ENSMUST00000184508 Mir7219 miRNA Interval_128264 chr5 112144675 112145032 + 0 NA Intergenic Intergenic -11384 ENSMUSG00000104538.1 ENSMUSG00000104538 ENSMUST00000197688 1700016B01Rik lincRNA Interval_52708 chr14 48801154 48801840 + 0 NA intron (ENSMUSG00000098682.8, intron 3 of 3) lincRNA-intron (ENSMUSG00000098682.8, intron 3 of 3) -12924 ENSMUSG00000115130.1 ENSMUSG00000115130 ENSMUST00000226916 Gm49152 TEC Interval_96477 chr2 124636738 124637587 + 0 NA intron (ENSMUSG00000027200.17, intron 1 of 18) protein_coding-intron (ENSMUSG00000027200.17, intron 1 of 16) -71493 ENSMUSG00000087450.1 ENSMUSG00000087450 ENSMUST00000137397 Gm13994 lincRNA Interval_88232 chr19 60873859 60874854 + 0 NA intron (ENSMUSG00000024997.7, intron 1 of 6) protein_coding-intron (ENSMUSG00000024997.7, intron 1 of 6) 200 ENSMUSG00000024997.7 ENSMUSG00000024997 ENSMUST00000025961 Prdx3 protein_coding Interval_156009 chr8 41984937 41985610 + 0 NA intron (ENSMUSG00000102046.1, intron 3 of 5) lincRNA-intron (ENSMUSG00000102046.1, intron 3 of 5) 61753 ENSMUSG00000108069.1 ENSMUSG00000108069 ENSMUST00000203513 Hspd1-ps1 processed_pseudogene Interval_40442 chr12 104907201 104908178 + 0 NA Intergenic Intergenic 19000 ENSMUSG00000100975.2 ENSMUSG00000100975 ENSMUST00000185486 Gm28875 lincRNA Interval_14106 chr10 27296547 27297481 + 0 NA intron (ENSMUSG00000019899.17, intron 12 of 26) protein_coding-intron (ENSMUSG00000019899.17, intron 12 of 64) 3719 ENSMUSG00000112472.1 ENSMUSG00000112472 ENSMUST00000219212 Gm48083 processed_pseudogene Interval_132969 chr5 149013968 149015847 + 0 NA exon (ENSMUSG00000085971.4, exon 1 of 1) processed_transcript-exon (ENSMUSG00000085971.4, exon 1 of 1) 906 ENSMUSG00000085971.4 ENSMUSG00000085971 ENSMUST00000202128 Gm15411 processed_transcript Interval_13504 chr10 18831825 18832291 + 0 NA promoter-TSS (ENSMUSG00000110737.1) lincRNA-promoter-TSS (ENSMUSG00000110737.1) -128 ENSMUSG00000110737.1 ENSMUSG00000110737 ENSMUST00000215429 4930444F02Rik lincRNA Interval_69618 chr16 94645629 94646753 + 0 NA intron (ENSMUSG00000022897.15, intron 2 of 5) protein_coding-intron (ENSMUSG00000022897.15, intron 2 of 11) 25814 ENSMUSG00000081692.1 ENSMUSG00000081692 ENSMUST00000119372 Gm15971 processed_pseudogene Interval_145626 chr7 36332608 36333081 + 0 NA Intergenic Intergenic 30329 ENSMUSG00000093359.1 ENSMUSG00000093359 ENSMUST00000175618 Gm23292 miRNA Interval_99127 chr2 157367193 157368953 + 0 NA intron (ENSMUSG00000063019.5, intron 1 of 2) protein_coding-intron (ENSMUSG00000063019.5, intron 1 of 2) 479 ENSMUSG00000063019.5 ENSMUSG00000063019 ENSMUST00000081202 Manbal protein_coding Interval_106693 chr3 99049517 99049811 + 0 NA promoter-TSS (ENSMUSG00000086833.2) lincRNA-promoter-TSS (ENSMUSG00000086833.2) -158 ENSMUSG00000086833.2 ENSMUSG00000086833 ENSMUST00000155224 Gm12440 lincRNA Interval_169388 chr9 96864052 96864282 + 0 NA intron (ENSMUSG00000043587.15, intron 1 of 6) protein_coding-intron (ENSMUSG00000043587.15, intron 1 of 5) 25266 ENSMUSG00000043587.15 ENSMUSG00000043587 ENSMUST00000185561 Pxylp1 protein_coding Interval_72391 chr17 29543182 29544257 + 0 NA intron (ENSMUSG00000079580.9, intron 1 of 1) protein_coding-intron (ENSMUSG00000079580.9, intron 2 of 2) 5919 ENSMUSG00000091614.2 ENSMUSG00000091614 ENSMUST00000168877 Gm17657 protein_coding Interval_144212 chr7 19986744 19987126 + 0 NA intron (ENSMUSG00000070777.5, intron 4 of 5) protein_coding-intron (ENSMUSG00000070777.5, intron 10 of 11) -4530 ENSMUSG00000060508.16 ENSMUSG00000060508 ENSMUST00000117909 Nlrp9b protein_coding Interval_19639 chr10 106644284 106644583 + 0 NA intron (ENSMUSG00000053825.15, intron 3 of 31) protein_coding-intron (ENSMUSG00000053825.15, intron 3 of 31) -43373 ENSMUSG00000112201.1 ENSMUSG00000112201 ENSMUST00000219229 4930532I03Rik antisense Interval_137673 chr6 78652145 78652491 + 0 NA Intergenic Intergenic -154877 ENSMUSG00000108073.1 ENSMUSG00000108073 ENSMUST00000203989 Gm6072 processed_pseudogene Interval_142185 chr6 137958616 137958852 + 0 NA Intergenic Intergenic -38763 ENSMUSG00000094466.1 ENSMUSG00000094466 ENSMUST00000177773 Gm24308 miRNA Interval_119645 chr4 138966768 138967515 + 0 NA promoter-TSS (ENSMUSG00000070661.7) protein_coding-promoter-TSS (ENSMUSG00000070661.7) 29 ENSMUSG00000070661.7 ENSMUSG00000070661 ENSMUST00000239443 Rnf186 protein_coding Interval_1320 chr1 20544103 20544794 + 0 NA intron (ENSMUSG00000043760.16, intron 27 of 66) protein_coding-intron (ENSMUSG00000043760.16, intron 27 of 66) 73616 ENSMUSG00000043760.16 ENSMUSG00000043760 ENSMUST00000128051 Pkhd1 protein_coding Interval_160795 chr8 112378447 112378716 + 0 NA Intergenic Intergenic -141615 ENSMUSG00000110435.1 ENSMUSG00000110435 ENSMUST00000212314 Gm3635 processed_pseudogene Interval_66470 chr16 34072183 34072605 + 0 NA intron (ENSMUSG00000061751.16, intron 33 of 48) protein_coding-intron (ENSMUSG00000061751.16, intron 34 of 59) 23634 ENSMUSG00000061751.16 ENSMUSG00000061751 ENSMUST00000132569 Kalrn protein_coding Interval_131481 chr5 137487520 137487922 + 0 NA intron (ENSMUSG00000029711.13, intron 1 of 5) protein_coding-intron (ENSMUSG00000029711.13, intron 1 of 5) -1905 ENSMUSG00000029711.13 ENSMUSG00000029711 ENSMUST00000111039 Epo protein_coding Interval_1616 chr1 29996459 29996963 + 0 NA Intergenic Intergenic 10777 ENSMUSG00000096829.1 ENSMUSG00000096829 ENSMUST00000178702 Gm23771 miRNA Interval_21981 chr11 5534756 5536006 + 0 NA intron (ENSMUSG00000020482.4, intron 2 of 4) protein_coding-intron (ENSMUSG00000020482.4, intron 2 of 4) 6806 ENSMUSG00000020482.4 ENSMUSG00000020482 ENSMUST00000020776 Ccdc117 protein_coding Interval_58107 chr15 27944147 27944514 + 0 NA intron (ENSMUSG00000022263.10, intron 1 of 56) protein_coding-intron (ENSMUSG00000022263.10, intron 1 of 56) 51033 ENSMUSG00000022263.10 ENSMUSG00000022263 ENSMUST00000228950 Trio protein_coding Interval_57357 chr15 9531166 9531423 + 0 NA Intergenic Intergenic -1466 ENSMUSG00000003882.5 ENSMUSG00000003882 ENSMUST00000228673 Il7r protein_coding Interval_32736 chr11 110186841 110187167 + 0 NA intron (ENSMUSG00000044749.13, intron 30 of 38) protein_coding-intron (ENSMUSG00000044749.13, intron 30 of 38) -18949 ENSMUSG00000041797.7 ENSMUSG00000041797 ENSMUST00000126499 Abca9 protein_coding Interval_90633 chr2 31587437 31587867 + 0 NA intron (ENSMUSG00000026843.15, intron 2 of 4) protein_coding-intron (ENSMUSG00000026843.15, intron 2 of 17) 14838 ENSMUSG00000026843.15 ENSMUSG00000026843 ENSMUST00000132534 Fubp3 protein_coding Interval_74680 chr17 55902329 55902682 + 0 NA Intergenic Intergenic 10412 ENSMUSG00000003198.10 ENSMUSG00000003198 ENSMUST00000224294 Zfp959 protein_coding Interval_159350 chr8 93976692 93977094 + 0 NA intron (ENSMUSG00000031751.14, intron 10 of 13) protein_coding-intron (ENSMUSG00000031751.14, intron 10 of 13) 11097 ENSMUSG00000031748.16 ENSMUSG00000031748 ENSMUST00000212008 Gnao1 protein_coding Interval_67686 chr16 55959121 55959552 + 0 NA Intergenic Intergenic -7007 ENSMUSG00000098371.1 ENSMUSG00000098371 ENSMUST00000122365 Gm28037 processed_transcript Interval_45805 chr13 58188357 58189052 + 0 NA intron (ENSMUSG00000114524.1, intron 1 of 1) protein_coding-intron (ENSMUSG00000005312.15, intron 6 of 10) 2614 ENSMUSG00000114524.1 ENSMUSG00000114524 ENSMUST00000224851 Gm48357 sense_intronic Interval_161264 chr8 119380517 119380824 + 0 NA intron (ENSMUSG00000110470.1, intron 2 of 3) lincRNA-intron (ENSMUSG00000110470.1, intron 2 of 3) 1974 ENSMUSG00000110470.1 ENSMUSG00000110470 ENSMUST00000212135 Gm45723 lincRNA Interval_16950 chr10 70095053 70098379 + 0 NA promoter-TSS (ENSMUSG00000048701.13) protein_coding-promoter-TSS (ENSMUSG00000048701.13) -78295 ENSMUSG00000048701.13 ENSMUSG00000048701 ENSMUST00000135607 Ccdc6 protein_coding Interval_167048 chr9 64880857 64881109 + 0 NA TTS (ENSMUSG00000089336.1) snoRNA-TTS (ENSMUSG00000089336.1) 942 ENSMUSG00000089336.1 ENSMUSG00000089336 ENSMUST00000158711 Gm24347 snoRNA Interval_74470 chr17 51345628 51346804 + 0 NA Intergenic Intergenic 89622 ENSMUSG00000117204.1 ENSMUSG00000117204 ENSMUST00000233466 C330011F03Rik lincRNA Interval_142359 chr6 140869165 140869960 + 0 NA Intergenic Intergenic -84858 ENSMUSG00000108039.1 ENSMUSG00000108039 ENSMUST00000203498 Gm43925 processed_pseudogene Interval_153532 chr8 3227889 3228655 + 0 NA intron (ENSMUSG00000005534.10, intron 2 of 2) protein_coding-intron (ENSMUSG00000005534.10, intron 2 of 20) -31432 ENSMUSG00000086065.1 ENSMUSG00000086065 ENSMUST00000128662 Gm16180 antisense Interval_1394 chr1 21276198 21276655 + 0 NA Intergenic Intergenic 4023 ENSMUSG00000096375.2 ENSMUSG00000096375 ENSMUST00000178379 Gm7094 unprocessed_pseudogene Interval_128986 chr5 116456621 116458022 + 0 NA exon (ENSMUSG00000107021.1, exon 1 of 1) TEC-exon (ENSMUSG00000107021.1, exon 1 of 1) 163 ENSMUSG00000107021.1 ENSMUSG00000107021 ENSMUST00000201273 Gm42853 TEC Interval_18888 chr10 92538260 92538666 + 0 NA Intergenic Intergenic 5207 ENSMUSG00000111759.1 ENSMUSG00000111759 ENSMUST00000215776 Gm4800 processed_pseudogene Interval_46085 chr13 61409363 61409661 + 0 NA Intergenic Intergenic 30358 ENSMUSG00000114802.1 ENSMUSG00000114802 ENSMUST00000225483 Cts7-ps unprocessed_pseudogene Interval_171946 chr9 122837051 122838799 + 0 NA exon (ENSMUSG00000107504.3, exon 3 of 3) protein_coding-exon (ENSMUSG00000107504.3, exon 3 of 3) 5961 ENSMUSG00000107504.3 ENSMUSG00000107504 ENSMUST00000203176 Gm35549 protein_coding Interval_88087 chr19 58953256 58954385 + 0 NA intron (ENSMUSG00000048029.10, intron 1 of 10) protein_coding-intron (ENSMUSG00000048029.10, intron 4 of 13) 643 ENSMUSG00000048029.10 ENSMUSG00000048029 ENSMUST00000201123 Eno4 protein_coding Interval_5267 chr1 87098477 87099179 + 0 NA exon (ENSMUSG00000079440.2, exon 11 of 11) protein_coding-exon (ENSMUSG00000079440.2, exon 11 of 11) 2778 ENSMUSG00000079440.2 ENSMUSG00000079440 ENSMUST00000113270 Alpi protein_coding Interval_26289 chr11 55816156 55817128 + 0 NA intron (ENSMUSG00000086020.1, intron 1 of 4) antisense-intron (ENSMUSG00000086020.1, intron 1 of 4) 44554 ENSMUSG00000086020.1 ENSMUSG00000086020 ENSMUST00000134285 Gm12239 antisense Interval_163657 chr9 23395144 23395365 + 0 NA intron (ENSMUSG00000031963.8, intron 4 of 4) protein_coding-intron (ENSMUSG00000031963.8, intron 11 of 14) 171968 ENSMUSG00000031963.8 ENSMUSG00000031963 ENSMUST00000214050 Bmper protein_coding Interval_55561 chr14 92235245 92235433 + 0 NA Intergenic Intergenic 1834 ENSMUSG00000115308.1 ENSMUSG00000115308 ENSMUST00000228682 Gm48944 processed_pseudogene Interval_19742 chr10 108416920 108417395 + 0 NA promoter-TSS (ENSMUSG00000112532.1) lincRNA-promoter-TSS (ENSMUSG00000112532.1) -10910 ENSMUSG00000093762.1 ENSMUSG00000093762 ENSMUST00000177317 Gm25591 miRNA Interval_66867 chr16 38196867 38197722 + 0 NA intron (ENSMUSG00000022812.14, intron 6 of 6) protein_coding-intron (ENSMUSG00000022812.14, intron 7 of 10) 10297 ENSMUSG00000098908.1 ENSMUSG00000098908 ENSMUST00000184976 Gm27931 snoRNA Interval_47075 chr13 75366983 75368861 + 0 NA Intergenic Intergenic 111465 ENSMUSG00000113821.1 ENSMUSG00000113821 ENSMUST00000221326 Gm48234 processed_pseudogene Interval_157032 chr8 64657424 64658302 + 0 NA intron (ENSMUSG00000037852.8, intron 1 of 8) protein_coding-intron (ENSMUSG00000037852.8, intron 1 of 8) -35866 ENSMUSG00000037852.8 ENSMUSG00000037852 ENSMUST00000211312 Cpe protein_coding Interval_148593 chr7 82899558 82900100 + 0 NA Intergenic Intergenic 32496 ENSMUSG00000057706.7 ENSMUSG00000057706 ENSMUST00000082237 Mex3b protein_coding Interval_81752 chr18 64403553 64404297 + 0 NA Intergenic Intergenic 24744 ENSMUSG00000118375.1 ENSMUSG00000118375 ENSMUST00000237830 Gm36804 processed_pseudogene Interval_168221 chr9 78021240 78021529 + 0 NA TTS (ENSMUSG00000111335.1) lincRNA-TTS (ENSMUSG00000111335.1) 6366 ENSMUSG00000111335.1 ENSMUSG00000111335 ENSMUST00000217068 Gm39375 lincRNA Interval_116779 chr4 117259854 117260619 + 0 NA intron (ENSMUSG00000048772.15, intron 2 of 3) protein_coding-intron (ENSMUSG00000048772.15, intron 1 of 2) 8174 ENSMUSG00000048772.15 ENSMUSG00000048772 ENSMUST00000145836 Tmem53 protein_coding Interval_21090 chr10 126143747 126144066 + 0 NA Intergenic Intergenic 42417 ENSMUSG00000112632.1 ENSMUSG00000112632 ENSMUST00000218265 Gm4510 processed_pseudogene Interval_138790 chr6 91868719 91868919 + 0 NA Intergenic Intergenic 9166 ENSMUSG00000108310.1 ENSMUSG00000108310 ENSMUST00000206250 Gm44712 TEC Interval_122211 chr5 19908910 19909913 + 0 NA intron (ENSMUSG00000040003.18, intron 1 of 21) protein_coding-intron (ENSMUSG00000040003.18, intron 2 of 22) -183204 ENSMUSG00000096882.1 ENSMUSG00000096882 ENSMUST00000083029 Gm23570 snRNA Interval_92979 chr2 69137574 69137818 + 0 NA intron (ENSMUSG00000034738.8, intron 1 of 15) protein_coding-intron (ENSMUSG00000034738.8, intron 1 of 15) -41609 ENSMUSG00000034738.8 ENSMUSG00000034738 ENSMUST00000141276 Nostrin protein_coding Interval_52695 chr14 48668374 48669309 + 0 NA promoter-TSS (ENSMUSG00000098682.8) lincRNA-promoter-TSS (ENSMUSG00000098682.8) 133 ENSMUSG00000098682.8 ENSMUSG00000098682 ENSMUST00000227221 Otx2os1 lincRNA Interval_149691 chr7 100679058 100679760 + 0 NA Intergenic Intergenic 4321 ENSMUSG00000108866.1 ENSMUSG00000108866 ENSMUST00000208164 Gm35082 lincRNA Interval_40662 chr12 106585758 106586203 + 0 NA Intergenic Intergenic 27230 ENSMUSG00000091583.1 ENSMUSG00000091583 ENSMUST00000146663 Gm17033 lincRNA Interval_11508 chr1 182326926 182327197 + 0 NA intron (ENSMUSG00000047539.9, intron 2 of 4) protein_coding-intron (ENSMUSG00000047539.9, intron 2 of 4) 14510 ENSMUSG00000047539.9 ENSMUSG00000047539 ENSMUST00000194213 Fbxo28 protein_coding Interval_68311 chr16 72990587 72991838 + 0 NA intron (ENSMUSG00000022883.11, intron 4 of 6) protein_coding-intron (ENSMUSG00000022883.11, intron 17 of 28) 14863 ENSMUSG00000022883.11 ENSMUSG00000022883 ENSMUST00000232432 Robo1 protein_coding Interval_59231 chr15 49228651 49230048 + 0 NA Intergenic Intergenic 35012 ENSMUSG00000115775.1 ENSMUSG00000115775 ENSMUST00000228245 Gm41318 lincRNA Interval_34097 chr11 120506496 120508706 + 0 NA Intergenic Intergenic 9876 ENSMUSG00000025792.9 ENSMUSG00000025792 ENSMUST00000152187 Slc25a10 protein_coding Interval_141875 chr6 135053733 135054218 + 0 NA Intergenic Intergenic -11676 ENSMUSG00000046733.7 ENSMUSG00000046733 ENSMUST00000050104 Gprc5a protein_coding Interval_72473 chr17 30045294 30045610 + 0 NA intron (ENSMUSG00000044477.12, intron 1 of 4) protein_coding-intron (ENSMUSG00000044477.12, intron 1 of 4) -40761 ENSMUSG00000117371.1 ENSMUSG00000117371 ENSMUST00000233996 Gm50019 bidirectional_promoter_lncRNA Interval_140546 chr6 119432665 119434141 + 0 NA exon (ENSMUSG00000030170.14, exon 5 of 5) protein_coding-exon (ENSMUSG00000030170.14, exon 5 of 5) -15928 ENSMUSG00000030168.13 ENSMUSG00000030168 ENSMUST00000189710 Adipor2 protein_coding Interval_65394 chr16 22110198 22111179 + 0 NA intron (ENSMUSG00000033581.17, intron 1 of 4) protein_coding-intron (ENSMUSG00000033581.17, intron 2 of 15) 10548 ENSMUSG00000033581.17 ENSMUSG00000033581 ENSMUST00000127696 Igf2bp2 protein_coding Interval_56327 chr14 117500737 117501183 + 0 NA intron (ENSMUSG00000058571.11, intron 3 of 9) protein_coding-intron (ENSMUSG00000058571.11, intron 3 of 8) 452887 ENSMUSG00000098648.1 ENSMUSG00000098648 ENSMUST00000183564 Mir6239 miRNA Interval_44891 chr13 49405113 49405928 + 0 NA Intergenic Intergenic -15758 ENSMUSG00000021385.10 ENSMUSG00000021385 ENSMUST00000021817 Ippk protein_coding Interval_159320 chr8 93495057 93495592 + 0 NA Intergenic Intergenic -8577 ENSMUSG00000118579.1 ENSMUSG00000118579 ENSMUST00000239350 AC162945.1 unprocessed_pseudogene Interval_147536 chr7 68159851 68160044 + 0 NA intron (ENSMUSG00000005533.10, intron 1 of 6) protein_coding-intron (ENSMUSG00000005533.10, intron 2 of 20) -51891 ENSMUSG00000005533.10 ENSMUSG00000005533 ENSMUST00000208871 Igf1r protein_coding Interval_109649 chr3 145737574 145737806 + 0 NA Intergenic Intergenic 1476 ENSMUSG00000105608.1 ENSMUSG00000105608 ENSMUST00000198263 Gm43408 processed_pseudogene Interval_96988 chr2 130288810 130289883 + 0 NA Intergenic Intergenic -4885 ENSMUSG00000027406.13 ENSMUSG00000027406 ENSMUST00000124868 Idh3b protein_coding Interval_58809 chr15 38212831 38213613 + 0 NA Intergenic Intergenic -5981 ENSMUSG00000061923.4 ENSMUSG00000061923 ENSMUST00000081966 Odf1 protein_coding Interval_138363 chr6 87628063 87629594 + 0 NA TTS (ENSMUSG00000030051.10) protein_coding-TTS (ENSMUSG00000030051.10) -28926 ENSMUSG00000107593.1 ENSMUSG00000107593 ENSMUST00000204112 Gm44097 antisense Interval_37879 chr12 72769737 72769987 + 0 NA intron (ENSMUSG00000021096.11, intron 1 of 2) protein_coding-intron (ENSMUSG00000021096.11, intron 1 of 5) 8547 ENSMUSG00000021096.11 ENSMUSG00000021096 ENSMUST00000222920 Ppm1a protein_coding Interval_102078 chr3 16578218 16578603 + 0 NA Intergenic Intergenic 244902 ENSMUSG00000088644.1 ENSMUSG00000088644 ENSMUST00000158019 Gm26485 snRNA Interval_144842 chr7 28558427 28558784 + 0 NA TTS (ENSMUSG00000030602.13) protein_coding-TTS (ENSMUSG00000030602.13) 2379 ENSMUSG00000098558.1 ENSMUSG00000098558 ENSMUST00000183983 Mir7049 miRNA Interval_60214 chr15 68214012 68214754 + 0 NA intron (ENSMUSG00000022335.17, intron 2 of 13) protein_coding-intron (ENSMUSG00000022335.17, intron 2 of 4) 44404 ENSMUSG00000022335.17 ENSMUSG00000022335 ENSMUST00000161139 Zfat protein_coding Interval_47298 chr13 80861804 80862598 + 0 NA Intergenic Intergenic 23323 ENSMUSG00000089827.1 ENSMUSG00000089827 ENSMUST00000161006 1700023H06Rik processed_transcript Interval_56945 chr14 123917233 123917403 + 0 NA intron (ENSMUSG00000032925.16, intron 7 of 10) protein_coding-intron (ENSMUSG00000032925.16, intron 7 of 10) -16400 ENSMUSG00000077481.1 ENSMUSG00000077481 ENSMUST00000104293 Gm25272 snoRNA Interval_89701 chr2 24776331 24777425 + 0 NA Intergenic Intergenic 87045 ENSMUSG00000036893.17 ENSMUSG00000036893 ENSMUST00000150379 Ehmt1 protein_coding Interval_119202 chr4 136171326 136173265 + 0 NA promoter-TSS (ENSMUSG00000018983.9) protein_coding-promoter-TSS (ENSMUSG00000018983.9) -8488 ENSMUSG00000018983.9 ENSMUSG00000018983 ENSMUST00000149750 E2f2 protein_coding Interval_99199 chr2 157970514 157971127 + 0 NA Intergenic Intergenic 36392 ENSMUSG00000027650.12 ENSMUSG00000027650 ENSMUST00000124338 Tti1 protein_coding Interval_59631 chr15 56769040 56769264 + 0 NA intron (ENSMUSG00000086541.8, intron 2 of 2) processed_transcript-intron (ENSMUSG00000086541.8, intron 2 of 2) 14276 ENSMUSG00000115493.1 ENSMUSG00000115493 ENSMUST00000228866 Gm5673 processed_pseudogene Interval_40327 chr12 103707384 103707949 + 0 NA Intergenic Intergenic -3047 ENSMUSG00000090478.1 ENSMUSG00000090478 ENSMUST00000171020 Gm5656 unprocessed_pseudogene Interval_102779 chr3 30975225 30976047 + 0 NA TTS (ENSMUSG00000102741.1) processed_pseudogene-TTS (ENSMUSG00000102741.1) 987 ENSMUSG00000102741.1 ENSMUSG00000102741 ENSMUST00000193442 Gm2979 processed_pseudogene Interval_100079 chr2 166963022 166963236 + 0 NA TTS (ENSMUSG00000039536.16) protein_coding-TTS (ENSMUSG00000039536.16) 1587 ENSMUSG00000039536.16 ENSMUSG00000039536 ENSMUST00000130104 Stau1 protein_coding Interval_89949 chr2 26661521 26662656 + 0 NA Intergenic Intergenic 9194 ENSMUSG00000026919.1 ENSMUSG00000026919 ENSMUST00000028283 Lcn4 protein_coding Interval_170351 chr9 107340252 107341105 + 0 NA promoter-TSS (ENSMUSG00000037977.6) protein_coding-promoter-TSS (ENSMUSG00000037977.6) -7452 ENSMUSG00000037977.6 ENSMUSG00000037977 ENSMUST00000135520 6430571L13Rik protein_coding Interval_170362 chr9 107434764 107435562 + 0 NA intron (ENSMUSG00000010066.15, intron 2 of 37) protein_coding-intron (ENSMUSG00000010066.15, intron 2 of 37) -4596 ENSMUSG00000091816.1 ENSMUSG00000091816 ENSMUST00000167578 Gm17141 antisense Interval_10612 chr1 172212022 172213493 + 0 NA promoter-TSS (ENSMUSG00000092085.1) antisense-promoter-TSS (ENSMUSG00000092085.1) -264 ENSMUSG00000092085.1 ENSMUSG00000092085 ENSMUST00000171429 Gm17224 antisense Interval_101682 chr3 8916385 8916751 + 0 NA intron (ENSMUSG00000040269.5, intron 1 of 2) protein_coding-intron (ENSMUSG00000040269.5, intron 1 of 2) 7350 ENSMUSG00000040269.5 ENSMUSG00000040269 ENSMUST00000042148 Mrps28 protein_coding Interval_28163 chr11 73337081 73337417 + 0 NA intron (ENSMUSG00000069825.12, intron 5 of 9) protein_coding-intron (ENSMUSG00000112920.1, intron 5 of 8) 7508 ENSMUSG00000069825.12 ENSMUSG00000069825 ENSMUST00000117445 Gm49340 protein_coding Interval_156259 chr8 46596160 46596827 + 0 NA intron (ENSMUSG00000038225.15, intron 6 of 14) protein_coding-intron (ENSMUSG00000038225.15, intron 6 of 14) -8256 ENSMUSG00000110270.1 ENSMUSG00000110270 ENSMUST00000211143 Gm45607 antisense Interval_113087 chr4 47808039 47808313 + 0 NA Intergenic Intergenic -112579 ENSMUSG00000089349.1 ENSMUSG00000089349 ENSMUST00000158724 Gm22670 snoRNA Interval_19061 chr10 94139061 94139315 + 0 NA intron (ENSMUSG00000020021.4, intron 3 of 3) protein_coding-intron (ENSMUSG00000020021.4, intron 19 of 20) -8835 ENSMUSG00000005897.14 ENSMUSG00000005897 ENSMUST00000099343 Nr2c1 protein_coding Interval_116314 chr4 109676086 109677412 + 0 NA promoter-TSS (ENSMUSG00000010517.7) protein_coding-promoter-TSS (ENSMUSG00000010517.7) -9560 ENSMUSG00000028551.14 ENSMUSG00000028551 ENSMUST00000097921 Cdkn2c protein_coding Interval_10640 chr1 172397318 172397848 + 0 NA Intergenic Intergenic -6594 ENSMUSG00000102278.1 ENSMUSG00000102278 ENSMUST00000193540 Gm37145 TEC Interval_5598 chr1 90089723 90090340 + 0 NA exon (ENSMUSG00000026301.16, exon 1 of 3) protein_coding-exon (ENSMUSG00000026301.16, exon 1 of 3) -35071 ENSMUSG00000026301.16 ENSMUSG00000026301 ENSMUST00000186522 Iqca protein_coding Interval_89173 chr2 17849243 17849451 + 0 NA Intergenic Intergenic -51363 ENSMUSG00000081851.1 ENSMUSG00000081851 ENSMUST00000120245 Gm13323 processed_pseudogene Interval_16776 chr10 68096539 68098720 + 0 NA exon (ENSMUSG00000019947.10, exon 11 of 11) protein_coding-exon (ENSMUSG00000019947.10, exon 11 of 11) -71003 ENSMUSG00000086838.1 ENSMUSG00000086838 ENSMUST00000143555 Gm16212 antisense Interval_157169 chr8 66860056 66861572 + 0 NA promoter-TSS (ENSMUSG00000014907.10) protein_coding-promoter-TSS (ENSMUSG00000014907.10) -143 ENSMUSG00000014907.10 ENSMUSG00000014907 ENSMUST00000212916 Naf1 protein_coding Interval_136988 chr6 65671042 65673313 + 0 NA intron (ENSMUSG00000049001.5, intron 1 of 3) protein_coding-intron (ENSMUSG00000049001.5, intron 1 of 3) -29253 ENSMUSG00000049001.5 ENSMUSG00000049001 ENSMUST00000169795 Ndnf protein_coding Interval_1931 chr1 34641885 34643116 + 0 NA Intergenic Intergenic -6311 ENSMUSG00000104098.1 ENSMUSG00000104098 ENSMUST00000195095 AA619741 processed_pseudogene Interval_96190 chr2 120403624 120404820 + 0 NA promoter-TSS (ENSMUSG00000062646.12) protein_coding-promoter-TSS (ENSMUSG00000062646.12) 21 ENSMUSG00000062646.12 ENSMUSG00000062646 ENSMUST00000127367 Ganc protein_coding Interval_126027 chr5 76950694 76952365 + 0 NA promoter-TSS (ENSMUSG00000029246.14) protein_coding-promoter-TSS (ENSMUSG00000029246.14) 43 ENSMUSG00000029246.14 ENSMUSG00000029246 ENSMUST00000031158 Ppat protein_coding Interval_172036 chr9 123754246 123754526 + 0 NA intron (ENSMUSG00000029530.16, intron 1 of 2) protein_coding-intron (ENSMUSG00000029530.16, intron 1 of 2) -8117 ENSMUSG00000091149.1 ENSMUSG00000091149 ENSMUST00000172274 Gm17020 processed_pseudogene Interval_66251 chr16 32655713 32657368 + 0 NA promoter-TSS (ENSMUSG00000022791.19) protein_coding-promoter-TSS (ENSMUSG00000022791.19) 11657 ENSMUSG00000075265.4 ENSMUSG00000075265 ENSMUST00000141256 Tnk2os antisense Interval_126556 chr5 90223174 90224540 + 0 NA promoter-TSS (ENSMUSG00000035505.14) protein_coding-promoter-TSS (ENSMUSG00000035505.14) -7835 ENSMUSG00000035505.14 ENSMUSG00000035505 ENSMUST00000148480 Cox18 protein_coding Interval_129489 chr5 120517518 120518177 + 0 NA intron (ENSMUSG00000032754.14, intron 2 of 2) protein_coding-intron (ENSMUSG00000032754.14, intron 2 of 15) 6577 ENSMUSG00000032754.14 ENSMUSG00000032754 ENSMUST00000123326 Slc8b1 protein_coding Interval_104842 chr3 75745400 75745985 + 0 NA Intergenic Intergenic -2505 ENSMUSG00000100962.3 ENSMUSG00000100962 ENSMUST00000189155 Gm29133 protein_coding Interval_1942 chr1 34812078 34812459 + 0 NA promoter-TSS (ENSMUSG00000104002.2) antisense-promoter-TSS (ENSMUSG00000104002.2) -360 ENSMUSG00000104002.2 ENSMUSG00000104002 ENSMUST00000193040 Gm38336 antisense Interval_48314 chr13 98040210 98041365 + 0 NA intron (ENSMUSG00000021662.11, intron 7 of 34) protein_coding-intron (ENSMUSG00000021662.11, intron 7 of 35) -24370 ENSMUSG00000021662.11 ENSMUSG00000021662 ENSMUST00000224866 Arhgef28 protein_coding Interval_170171 chr9 105860983 105861536 + 0 NA intron (ENSMUSG00000091345.9, intron 39 of 39) protein_coding-intron (ENSMUSG00000091345.9, intron 39 of 39) -33174 ENSMUSG00000043719.14 ENSMUSG00000043719 ENSMUST00000060896 Col6a6 protein_coding Interval_139425 chr6 100085918 100086789 + 0 NA Intergenic Intergenic 57461 ENSMUSG00000107558.1 ENSMUSG00000107558 ENSMUST00000204605 2010109P13Rik TEC Interval_21913 chr11 5151716 5152872 + 0 NA promoter-TSS (ENSMUSG00000034164.17) protein_coding-promoter-TSS (ENSMUSG00000034164.17) -54 ENSMUSG00000034164.17 ENSMUSG00000034164 ENSMUST00000138551 Emid1 protein_coding Interval_33844 chr11 118944751 118945150 + 0 NA Intergenic Intergenic -43266 ENSMUSG00000046697.17 ENSMUSG00000046697 ENSMUST00000106273 Enpp7 protein_coding Interval_34423 chr12 4066018 4066971 + 0 NA Intergenic Intergenic 11130 ENSMUSG00000112817.1 ENSMUSG00000112817 ENSMUST00000219162 Gm48122 processed_pseudogene Interval_129385 chr5 119656389 119658448 + 0 NA intron (ENSMUSG00000085345.1, intron 1 of 1) antisense-intron (ENSMUSG00000087516.7, intron 1 of 2) 11284 ENSMUSG00000085345.1 ENSMUSG00000085345 ENSMUST00000154997 Gm16064 lincRNA Interval_64127 chr16 8592187 8592391 + 0 NA intron (ENSMUSG00000057880.12, intron 2 of 3) protein_coding-intron (ENSMUSG00000057880.12, intron 6 of 15) 8662 ENSMUSG00000057880.12 ENSMUSG00000057880 ENSMUST00000128459 Abat protein_coding Interval_149848 chr7 101977621 101977904 + 0 NA intron (ENSMUSG00000066306.13, intron 2 of 8) protein_coding-intron (ENSMUSG00000066306.13, intron 2 of 24) 2498 ENSMUSG00000110287.1 ENSMUSG00000110287 ENSMUST00000210584 Gm45313 processed_pseudogene Interval_169594 chr9 99357705 99358995 + 0 NA exon (ENSMUSG00000037681.13, exon 1 of 23) protein_coding-exon (ENSMUSG00000037681.13, exon 1 of 23) 207 ENSMUSG00000037681.13 ENSMUSG00000037681 ENSMUST00000190002 Esyt3 protein_coding Interval_70731 chr17 13987639 13988016 + 0 NA Intergenic Intergenic 15877 ENSMUSG00000101307.2 ENSMUSG00000101307 ENSMUST00000189454 Gm7356 protein_coding Interval_21756 chr11 4146530 4147224 + 0 NA intron (ENSMUSG00000051427.14, intron 1 of 5) protein_coding-intron (ENSMUSG00000051427.14, intron 7 of 11) 7513 ENSMUSG00000093080.1 ENSMUSG00000093080 ENSMUST00000175339 Mir3060 miRNA Interval_99800 chr2 164976653 164977222 + 0 NA intron (ENSMUSG00000017740.17, intron 6 of 25) protein_coding-intron (ENSMUSG00000017740.17, intron 6 of 25) 8696 ENSMUSG00000017740.17 ENSMUSG00000017740 ENSMUST00000137302 Slc12a5 protein_coding Interval_123243 chr5 30863430 30864581 + 0 NA promoter-TSS (ENSMUSG00000029166.14) protein_coding-promoter-TSS (ENSMUSG00000029166.14) -5628 ENSMUSG00000038828.13 ENSMUSG00000038828 ENSMUST00000202008 Tmem214 protein_coding Interval_15369 chr10 45137640 45138043 + 0 NA intron (ENSMUSG00000019849.11, intron 10 of 14) protein_coding-intron (ENSMUSG00000019849.11, intron 10 of 14) -40257 ENSMUSG00000019848.14 ENSMUSG00000019848 ENSMUST00000161803 Popdc3 protein_coding Interval_43655 chr13 34609545 34610083 + 0 NA Intergenic Intergenic 2432 ENSMUSG00000113185.1 ENSMUSG00000113185 ENSMUST00000221927 Gm47127 lincRNA Interval_82320 chr18 70627681 70629475 + 0 NA Intergenic Intergenic 19459 ENSMUSG00000117810.1 ENSMUSG00000117810 ENSMUST00000236578 Gm8934 processed_pseudogene Interval_12411 chr1 193172995 193174400 + 0 NA promoter-TSS (ENSMUSG00000079144.7) protein_coding-promoter-TSS (ENSMUSG00000079144.7) -47 ENSMUSG00000079144.7 ENSMUSG00000079144 ENSMUST00000193307 A130010J15Rik protein_coding Interval_30796 chr11 96512065 96512394 + 0 NA intron (ENSMUSG00000057058.16, intron 2 of 7) protein_coding-intron (ENSMUSG00000057058.16, intron 2 of 11) 28447 ENSMUSG00000057058.16 ENSMUSG00000057058 ENSMUST00000123814 Skap1 protein_coding Interval_18788 chr10 90779555 90780428 + 0 NA intron (ENSMUSG00000058589.14, intron 4 of 11) protein_coding-intron (ENSMUSG00000058589.14, intron 3 of 11) -28925 ENSMUSG00000112507.1 ENSMUSG00000112507 ENSMUST00000219326 Gm47589 processed_pseudogene Interval_103180 chr3 36403418 36403674 + 0 NA Intergenic Intergenic -8349 ENSMUSG00000105281.1 ENSMUSG00000105281 ENSMUST00000196870 Gm17835 processed_pseudogene Interval_94742 chr2 93915281 93916274 + 0 NA Intergenic Intergenic 25101 ENSMUSG00000083009.1 ENSMUSG00000083009 ENSMUST00000121653 Gm1335 processed_pseudogene Interval_145915 chr7 41657842 41658087 + 0 NA Intergenic Intergenic 10154 ENSMUSG00000091401.1 ENSMUSG00000091401 ENSMUST00000172364 Gm9252 processed_pseudogene Interval_136566 chr6 55770459 55770646 + 0 NA Intergenic Intergenic 85981 ENSMUSG00000108063.1 ENSMUSG00000108063 ENSMUST00000203099 Gm3279 lincRNA Interval_166248 chr9 57784622 57785483 + 0 NA intron (ENSMUSG00000091908.7, intron 1 of 3) antisense-intron (ENSMUSG00000091908.7, intron 1 of 3) 7187 ENSMUSG00000091908.7 ENSMUSG00000091908 ENSMUST00000163186 Gm17231 antisense Interval_60233 chr15 68657738 68658156 + 0 NA Intergenic Intergenic -13469 ENSMUSG00000096689.1 ENSMUSG00000096689 ENSMUST00000083234 Gm25987 snRNA Interval_171244 chr9 115577195 115577886 + 0 NA Intergenic Intergenic 49178 ENSMUSG00000094630.1 ENSMUSG00000094630 ENSMUST00000082810 n-R5s92 rRNA Interval_148136 chr7 79434790 79435081 + 0 NA intron (ENSMUSG00000039187.16, intron 21 of 21) protein_coding-intron (ENSMUSG00000039187.16, intron 23 of 37) -5733 ENSMUSG00000039187.16 ENSMUSG00000039187 ENSMUST00000206121 Fanci protein_coding Interval_146615 chr7 48304139 48304388 + 0 NA Intergenic Intergenic -7041 ENSMUSG00000099620.1 ENSMUSG00000099620 ENSMUST00000188191 Mrgprb13 unprocessed_pseudogene Interval_107526 chr3 108312653 108312913 + 0 NA intron (ENSMUSG00000068747.14, intron 3 of 20) protein_coding-intron (ENSMUSG00000068747.14, intron 3 of 19) 24902 ENSMUSG00000105358.1 ENSMUSG00000105358 ENSMUST00000198943 Gm43099 TEC Interval_158813 chr8 86826430 86827962 + 0 NA intron (ENSMUSG00000031652.11, intron 1 of 1) protein_coding-intron (ENSMUSG00000031652.11, intron 1 of 1) 25224 ENSMUSG00000031652.11 ENSMUSG00000031652 ENSMUST00000210029 N4bp1 protein_coding Interval_59709 chr15 58792624 58793364 + 0 NA intron (ENSMUSG00000062373.8, intron 3 of 6) protein_coding-intron (ENSMUSG00000062373.8, intron 3 of 6) -11043 ENSMUSG00000093677.1 ENSMUSG00000093677 ENSMUST00000176387 Gm20712 sense_overlapping Interval_43483 chr13 31777966 31778477 + 0 NA Intergenic Intergenic -19318 ENSMUSG00000086144.2 ENSMUSG00000086144 ENSMUST00000154678 Gm11379 antisense Interval_96036 chr2 119332073 119332754 + 0 NA TTS (ENSMUSG00000027314.6) protein_coding-TTS (ENSMUSG00000027314.6) 3875 ENSMUSG00000027314.6 ENSMUSG00000027314 ENSMUST00000127102 Dll4 protein_coding Interval_150801 chr7 114756665 114757407 + 0 NA intron (ENSMUSG00000048782.15, intron 1 of 1) protein_coding-intron (ENSMUSG00000048782.15, intron 1 of 2) -36932 ENSMUSG00000048782.15 ENSMUSG00000048782 ENSMUST00000206274 Insc protein_coding Interval_32691 chr11 109686690 109687592 + 0 NA intron (ENSMUSG00000020614.13, intron 1 of 11) protein_coding-intron (ENSMUSG00000020614.13, intron 1 of 10) 21197 ENSMUSG00000020612.16 ENSMUSG00000020612 ENSMUST00000155532 Prkar1a protein_coding Interval_174094 chrX 134660272 134660827 + 0 NA Intergenic Intergenic -20971 ENSMUSG00000082655.1 ENSMUSG00000082655 ENSMUST00000117957 Gm7857 processed_pseudogene Interval_16788 chr10 68165689 68166133 + 0 NA intron (ENSMUSG00000019947.10, intron 4 of 10) protein_coding-intron (ENSMUSG00000019947.10, intron 4 of 10) 112829 ENSMUSG00000019947.10 ENSMUSG00000019947 ENSMUST00000218425 Arid5b protein_coding Interval_93277 chr2 71641782 71641969 + 0 NA Intergenic Intergenic -77542 ENSMUSG00000064263.6 ENSMUSG00000064263 ENSMUST00000079720 Platr26 lincRNA Interval_83036 chr18 80643272 80644520 + 0 NA intron (ENSMUSG00000033016.16, intron 8 of 9) protein_coding-intron (ENSMUSG00000033016.16, intron 8 of 9) -34921 ENSMUSG00000033016.16 ENSMUSG00000033016 ENSMUST00000236711 Nfatc1 protein_coding Interval_158721 chr8 85541362 85542880 + 0 NA intron (ENSMUSG00000031701.6, intron 6 of 8) protein_coding-intron (ENSMUSG00000031701.6, intron 6 of 8) 11345 ENSMUSG00000031701.6 ENSMUSG00000031701 ENSMUST00000211630 Dnaja2 protein_coding Interval_36563 chr12 50120451 50120864 + 0 NA exon (ENSMUSG00000112353.1, exon 1 of 3) lincRNA-exon (ENSMUSG00000112353.1, exon 1 of 3) 348 ENSMUSG00000112353.1 ENSMUSG00000112353 ENSMUST00000218806 Gm40418 lincRNA Interval_42671 chr13 17836332 17838737 + 0 NA Intergenic Intergenic 16588 ENSMUSG00000081285.2 ENSMUSG00000081285 ENSMUST00000118792 Gm18859 processed_pseudogene Interval_16774 chr10 68089579 68090081 + 0 NA Intergenic Intergenic -63204 ENSMUSG00000086838.1 ENSMUSG00000086838 ENSMUST00000143555 Gm16212 antisense Interval_14773 chr10 39731061 39733124 + 0 NA promoter-TSS (ENSMUSG00000019841.15) protein_coding-promoter-TSS (ENSMUSG00000019841.15) -86 ENSMUSG00000087177.7 ENSMUSG00000087177 ENSMUST00000153113 E130307A14Rik antisense Interval_157164 chr8 66728818 66730095 + 0 NA Intergenic Intergenic 32264 ENSMUSG00000036437.6 ENSMUSG00000036437 ENSMUST00000039303 Npy1r protein_coding Interval_88883 chr2 12033432 12033780 + 0 NA Intergenic Intergenic 50386 ENSMUSG00000080801.2 ENSMUSG00000080801 ENSMUST00000120962 Gm13310 processed_pseudogene Interval_30891 chr11 97083033 97085858 + 0 NA Intergenic Intergenic -12488 ENSMUSG00000084068.1 ENSMUSG00000084068 ENSMUST00000119956 Gm11573 processed_pseudogene Interval_71852 chr17 26510913 26511917 + 0 NA intron (ENSMUSG00000024190.7, intron 3 of 5) protein_coding-intron (ENSMUSG00000024190.7, intron 3 of 5) -2943 ENSMUSG00000024190.7 ENSMUSG00000024190 ENSMUST00000011196 Dusp1 protein_coding Interval_139713 chr6 107993128 107993953 + 0 NA Intergenic Intergenic -71522 ENSMUSG00000034639.7 ENSMUSG00000034639 ENSMUST00000138140 Setmar protein_coding Interval_164887 chr9 42819031 42819679 + 0 NA intron (ENSMUSG00000032017.14, intron 1 of 20) protein_coding-intron (ENSMUSG00000032017.14, intron 1 of 20) 42774 ENSMUSG00000076355.2 ENSMUSG00000076355 ENSMUST00000102400 Gm27509 miRNA Interval_128429 chr5 113275744 113276487 + 0 NA exon (ENSMUSG00000042216.13, exon 13 of 25) protein_coding-exon (ENSMUSG00000042216.13, exon 13 of 25) 3221 ENSMUSG00000042216.13 ENSMUSG00000042216 ENSMUST00000140981 Sgsm1 protein_coding Interval_145295 chr7 31182753 31183113 + 0 NA TTS (ENSMUSG00000099536.1) processed_pseudogene-TTS (ENSMUSG00000099536.1) 896 ENSMUSG00000099536.1 ENSMUSG00000099536 ENSMUST00000187492 Gm9569 processed_pseudogene Interval_165898 chr9 54438043 54438736 + 0 NA intron (ENSMUSG00000041268.17, intron 13 of 15) protein_coding-intron (ENSMUSG00000041268.17, intron 13 of 43) -56496 ENSMUSG00000041268.17 ENSMUSG00000041268 ENSMUST00000149709 Dmxl2 protein_coding Interval_41450 chr12 114147890 114148223 + 0 NA Intergenic Intergenic 5588 ENSMUSG00000076652.4 ENSMUSG00000076652 ENSMUST00000103461 Ighv7-3 IG_V_gene Interval_12164 chr1 190328420 190328739 + 0 NA Intergenic Intergenic -75066 ENSMUSG00000103644.1 ENSMUSG00000103644 ENSMUST00000193966 Gm29678 lincRNA Interval_116354 chr4 110128848 110129654 + 0 NA Intergenic Intergenic 151198 ENSMUSG00000047143.3 ENSMUSG00000047143 ENSMUST00000061187 Dmrta2 protein_coding Interval_162886 chr9 11420771 11420998 + 0 NA Intergenic Intergenic -106695 ENSMUSG00000110858.1 ENSMUSG00000110858 ENSMUST00000214279 Gm18160 unprocessed_pseudogene Interval_8442 chr1 139429304 139430137 + 0 NA intron (ENSMUSG00000033964.12, intron 3 of 8) protein_coding-intron (ENSMUSG00000033964.12, intron 3 of 10) 7432 ENSMUSG00000033964.12 ENSMUSG00000033964 ENSMUST00000199011 Zbtb41 protein_coding Interval_13335 chr10 15473199 15473450 + 0 NA Intergenic Intergenic 48080 ENSMUSG00000112395.1 ENSMUSG00000112395 ENSMUST00000219635 Gm7198 processed_pseudogene Interval_51954 chr14 34219551 34220988 + 0 NA intron (ENSMUSG00000041479.14, intron 1 of 2) protein_coding-intron (ENSMUSG00000041479.14, intron 1 of 7) 674 ENSMUSG00000041479.14 ENSMUSG00000041479 ENSMUST00000035351 Syt15 protein_coding Interval_55105 chr14 78144358 78144851 + 0 NA Intergenic Intergenic 46874 ENSMUSG00000087932.1 ENSMUSG00000087932 ENSMUST00000157307 Mir1971 miRNA Interval_6204 chr1 101728009 101728366 + 0 NA Intergenic Intergenic 26356 ENSMUSG00000100065.1 ENSMUSG00000100065 ENSMUST00000189423 Gm18969 processed_pseudogene Interval_26102 chr11 54256813 54257689 + 0 NA Intergenic Intergenic -7584 ENSMUSG00000018916.5 ENSMUSG00000018916 ENSMUST00000019060 Csf2 protein_coding Interval_11647 chr1 183779087 183779299 + 0 NA intron (ENSMUSG00000103305.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000103305.1, intron 1 of 2) 30216 ENSMUSG00000103305.1 ENSMUSG00000103305 ENSMUST00000193310 Gm34068 lincRNA Interval_82093 chr18 67676953 67677227 + 0 NA intron (ENSMUSG00000024539.17, intron 6 of 6) protein_coding-intron (ENSMUSG00000024539.17, intron 7 of 9) 13134 ENSMUSG00000024539.17 ENSMUSG00000024539 ENSMUST00000128169 Ptpn2 protein_coding Interval_119616 chr4 138753697 138754002 + 0 NA intron (ENSMUSG00000028749.7, intron 3 of 4) protein_coding-intron (ENSMUSG00000028749.7, intron 3 of 4) 3777 ENSMUSG00000028749.7 ENSMUSG00000028749 ENSMUST00000030526 Pla2g2f protein_coding Interval_71557 chr17 24544647 24544896 + 0 NA exon (ENSMUSG00000117423.1, exon 3 of 3) antisense-exon (ENSMUSG00000117423.1, exon 3 of 3) 10857 ENSMUSG00000117423.1 ENSMUSG00000117423 ENSMUST00000234764 Gm33508 antisense Interval_28451 chr11 75983032 75983802 + 0 NA Intergenic Intergenic -16495 ENSMUSG00000053783.5 ENSMUSG00000053783 ENSMUST00000066408 1700016K19Rik protein_coding Interval_92796 chr2 65495120 65495407 + 0 NA promoter-TSS (ENSMUSG00000057182.15) protein_coding-promoter-TSS (ENSMUSG00000057182.15) -14002 ENSMUSG00000086701.1 ENSMUSG00000086701 ENSMUST00000145994 Gm13595 antisense Interval_40454 chr12 104977563 104979681 + 0 NA intron (ENSMUSG00000054150.12, intron 1 of 16) protein_coding-intron (ENSMUSG00000054150.12, intron 1 of 16) 20055 ENSMUSG00000054150.12 ENSMUSG00000054150 ENSMUST00000095439 Syne3 protein_coding Interval_6351 chr1 106178357 106178566 + 0 NA intron (ENSMUSG00000044340.7, intron 1 of 16) protein_coding-intron (ENSMUSG00000044340.7, intron 1 of 16) -6937 ENSMUSG00000101583.1 ENSMUSG00000101583 ENSMUST00000190105 Gm20753 lincRNA Interval_121903 chr5 9368151 9368617 + 0 NA intron (ENSMUSG00000056004.16, intron 1 of 19) protein_coding-intron (ENSMUSG00000056004.16, intron 1 of 21) -7320 ENSMUSG00000077896.1 ENSMUSG00000077896 ENSMUST00000104703 Mir879 miRNA Interval_3063 chr1 52815395 52815581 + 0 NA intron (ENSMUSG00000026102.9, intron 1 of 3) protein_coding-intron (ENSMUSG00000026102.9, intron 1 of 5) -16000 ENSMUSG00000026102.9 ENSMUSG00000026102 ENSMUST00000159725 Inpp1 protein_coding Interval_88000 chr19 57696795 57697287 + 0 NA intron (ENSMUSG00000054843.9, intron 15 of 28) protein_coding-intron (ENSMUSG00000054843.9, intron 15 of 28) 86007 ENSMUSG00000054843.9 ENSMUSG00000054843 ENSMUST00000077282 Atrnl1 protein_coding Interval_141045 chr6 124636730 124637657 + 0 NA Intergenic Intergenic -1108 ENSMUSG00000079343.4 ENSMUSG00000079343 ENSMUST00000218020 C1s2 protein_coding Interval_63755 chr15 103251600 103253169 + 0 NA promoter-TSS (ENSMUSG00000058794.12) protein_coding-promoter-TSS (ENSMUSG00000058794.12) -868 ENSMUSG00000058794.12 ENSMUSG00000058794 ENSMUST00000132438 Nfe2 protein_coding Interval_137406 chr6 71959160 71959466 + 0 NA intron (ENSMUSG00000049553.11, intron 20 of 33) protein_coding-intron (ENSMUSG00000049553.11, intron 20 of 33) 4462 ENSMUSG00000097133.1 ENSMUSG00000097133 ENSMUST00000181028 Gm26628 antisense Interval_171349 chr9 116701070 116701691 + 0 NA intron (ENSMUSG00000039607.17, intron 9 of 15) protein_coding-intron (ENSMUSG00000039607.17, intron 7 of 12) -357778 ENSMUSG00000092184.1 ENSMUSG00000092184 ENSMUST00000172565 Gm18489 processed_pseudogene Interval_954 chr1 13407458 13407835 + 0 NA promoter-TSS (ENSMUSG00000101171.1) processed_pseudogene-promoter-TSS (ENSMUSG00000101171.1) 9 ENSMUSG00000101171.1 ENSMUSG00000101171 ENSMUST00000187246 Gm7593 processed_pseudogene Interval_155026 chr8 25794422 25794825 + 0 NA TTS (ENSMUSG00000037296.7) protein_coding-TTS (ENSMUSG00000037296.7) 9036 ENSMUSG00000037296.7 ENSMUSG00000037296 ENSMUST00000211670 Lsm1 protein_coding Interval_143668 chr7 14125722 14125940 + 0 NA Intergenic Intergenic -2787 ENSMUSG00000074375.3 ENSMUSG00000074375 ENSMUST00000098809 Sult2a3 protein_coding Interval_169334 chr9 96498526 96498754 + 0 NA intron (ENSMUSG00000099564.2, intron 7 of 10) protein_coding-intron (ENSMUSG00000099564.2, intron 7 of 10) -3427 ENSMUSG00000099049.1 ENSMUSG00000099049 ENSMUST00000183341 Gm27289 rRNA Interval_113193 chr4 49478616 49479296 + 0 NA Intergenic Intergenic 4649 ENSMUSG00000084479.1 ENSMUSG00000084479 ENSMUST00000122530 Gm26424 snRNA Interval_111719 chr4 26701177 26701393 + 0 NA intron (ENSMUSG00000086257.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000086257.1, intron 1 of 2) 4164 ENSMUSG00000086257.1 ENSMUSG00000086257 ENSMUST00000154459 4930548K13Rik lincRNA Interval_149346 chr7 97617607 97618945 + 0 NA intron (ENSMUSG00000035623.14, intron 2 of 14) protein_coding-intron (ENSMUSG00000035623.14, intron 2 of 15) -22835 ENSMUSG00000108442.1 ENSMUSG00000108442 ENSMUST00000205636 Rpl15-ps5 processed_pseudogene Interval_163647 chr9 23059315 23059498 + 0 NA Intergenic Intergenic -163880 ENSMUSG00000031963.8 ENSMUSG00000031963 ENSMUST00000214050 Bmper protein_coding Interval_144631 chr7 27242682 27244729 + 0 NA TTS (ENSMUSG00000003762.13) protein_coding-TTS (ENSMUSG00000003762.13) 3390 ENSMUSG00000003762.13 ENSMUSG00000003762 ENSMUST00000123012 Coq8b protein_coding Interval_96419 chr2 122348185 122349383 + 0 NA TTS (ENSMUSG00000033256.14) protein_coding-TTS (ENSMUSG00000033256.14) 20353 ENSMUSG00000033256.14 ENSMUSG00000033256 ENSMUST00000135848 Shf protein_coding Interval_172166 chrX 8139563 8139880 + 0 NA exon (ENSMUSG00000031167.16, exon 7 of 7) protein_coding-exon (ENSMUSG00000031167.16, exon 7 of 7) 3197 ENSMUSG00000031167.16 ENSMUSG00000031167 ENSMUST00000145450 Rbm3 protein_coding Interval_34145 chr11 120901842 120902856 + 0 NA intron (ENSMUSG00000048445.6, intron 6 of 18) protein_coding-intron (ENSMUSG00000048445.6, intron 6 of 18) -28678 ENSMUSG00000048445.6 ENSMUSG00000048445 ENSMUST00000143895 Ccdc57 protein_coding Interval_25279 chr11 46076727 46077681 + 0 NA intron (ENSMUSG00000011256.16, intron 3 of 22) protein_coding-intron (ENSMUSG00000011256.16, intron 3 of 22) -24883 ENSMUSG00000069899.3 ENSMUSG00000069899 ENSMUST00000154156 Gm12166 protein_coding Interval_131723 chr5 139505221 139506565 + 0 NA Intergenic Intergenic -17856 ENSMUSG00000106056.1 ENSMUSG00000106056 ENSMUST00000198000 4930500L23Rik lincRNA Interval_85373 chr19 25306214 25306880 + 0 NA intron (ENSMUSG00000032702.16, intron 2 of 13) protein_coding-intron (ENSMUSG00000032702.16, intron 2 of 13) 40656 ENSMUSG00000118238.1 ENSMUSG00000118238 ENSMUST00000235913 Gm34432 processed_pseudogene Interval_127786 chr5 107829840 107831348 + 0 NA exon (ENSMUSG00000063447.7, exon 1 of 1) protein_coding-exon (ENSMUSG00000063447.7, exon 1 of 1) 495 ENSMUSG00000063447.7 ENSMUSG00000063447 ENSMUST00000072578 Ube2d2b protein_coding Interval_62764 chr15 96702100 96702966 + 0 NA Intergenic Intergenic 2360 ENSMUSG00000102385.1 ENSMUSG00000102385 ENSMUST00000192790 Gm38144 TEC Interval_137193 chr6 69595707 69596228 + 0 NA Intergenic Intergenic -3920 ENSMUSG00000106213.1 ENSMUSG00000106213 ENSMUST00000200400 Igkv13-55-1 IG_V_pseudogene Interval_143557 chr7 12779854 12781114 + 0 NA promoter-TSS (ENSMUSG00000109594.1) TEC-promoter-TSS (ENSMUSG00000109594.1) -376 ENSMUSG00000109594.1 ENSMUSG00000109594 ENSMUST00000209738 1700047O18Rik TEC Interval_115705 chr4 102776536 102776908 + 0 NA intron (ENSMUSG00000028524.21, intron 1 of 4) protein_coding-intron (ENSMUSG00000028524.21, intron 1 of 23) 16257 ENSMUSG00000028524.21 ENSMUSG00000028524 ENSMUST00000140676 Sgip1 protein_coding Interval_98648 chr2 153814065 153814607 + 0 NA intron (ENSMUSG00000044083.12, intron 16 of 27) protein_coding-intron (ENSMUSG00000044083.12, intron 16 of 27) -11835 ENSMUSG00000083097.3 ENSMUSG00000083097 ENSMUST00000118786 Gm14494 processed_pseudogene Interval_82195 chr18 68799039 68799371 + 0 NA intron (ENSMUSG00000118102.1, intron 2 of 2) lincRNA-intron (ENSMUSG00000118102.1, intron 2 of 2) 6153 ENSMUSG00000118102.1 ENSMUSG00000118102 ENSMUST00000237657 Gm50260 lincRNA Interval_37031 chr12 56591589 56592112 + 0 NA exon (ENSMUSG00000092515.8, exon 3 of 5) lincRNA-exon (ENSMUSG00000092515.8, exon 3 of 5) 781 ENSMUSG00000092515.8 ENSMUSG00000092515 ENSMUST00000182261 C87198 lincRNA Interval_165285 chr9 46027943 46028467 + 0 NA intron (ENSMUSG00000034135.15, intron 1 of 24) protein_coding-intron (ENSMUSG00000034135.15, intron 1 of 22) -43422 ENSMUSG00000003131.7 ENSMUSG00000003131 ENSMUST00000214996 Pafah1b2 protein_coding Interval_63942 chr16 4683566 4684576 + 0 NA promoter-TSS (ENSMUSG00000004069.17) protein_coding-promoter-TSS (ENSMUSG00000004069.17) -44 ENSMUSG00000004069.17 ENSMUSG00000004069 ENSMUST00000229529 Dnaja3 protein_coding Interval_106720 chr3 99716354 99717250 + 0 NA Intergenic Intergenic -8955 ENSMUSG00000064890.1 ENSMUSG00000064890 ENSMUST00000082956 Gm22505 snRNA Interval_123245 chr5 30876009 30876351 + 0 NA exon (ENSMUSG00000038828.13, exon 14 of 16) protein_coding-exon (ENSMUSG00000038828.13, exon 14 of 16) -5352 ENSMUSG00000107086.1 ENSMUSG00000107086 ENSMUST00000202534 Gm43808 TEC Interval_63401 chr15 100822419 100822753 + 0 NA exon (ENSMUSG00000023032.12, exon 25 of 25) protein_coding-exon (ENSMUSG00000023032.12, exon 25 of 25) 9805 ENSMUSG00000115912.1 ENSMUSG00000115912 ENSMUST00000230694 Gm35569 lincRNA Interval_1089 chr1 15419735 15420008 + 0 NA intron (ENSMUSG00000092083.4, intron 2 of 2) protein_coding-intron (ENSMUSG00000092083.4, intron 1 of 1) 55569 ENSMUSG00000102937.1 ENSMUSG00000102937 ENSMUST00000193873 Gm38116 TEC Interval_16329 chr10 62275042 62275357 + 0 NA intron (ENSMUSG00000037012.18, intron 15 of 17) protein_coding-intron (ENSMUSG00000037012.18, intron 17 of 19) 15130 ENSMUSG00000037012.18 ENSMUSG00000037012 ENSMUST00000149534 Hk1 protein_coding Interval_39063 chr12 84764785 84766580 + 0 NA intron (ENSMUSG00000021242.9, intron 1 of 1) protein_coding-intron (ENSMUSG00000021242.9, intron 1 of 3) -3142 ENSMUSG00000021242.9 ENSMUSG00000021242 ENSMUST00000221056 Npc2 protein_coding Interval_130518 chr5 128526939 128527694 + 0 NA Intergenic Intergenic 7095 ENSMUSG00000105172.1 ENSMUSG00000105172 ENSMUST00000196193 Gm42499 TEC Interval_84060 chr19 7010899 7011136 + 0 NA intron (ENSMUSG00000024965.9, intron 6 of 13) protein_coding-intron (ENSMUSG00000024965.9, intron 6 of 14) 8328 ENSMUSG00000024965.9 ENSMUSG00000024965 ENSMUST00000238171 Fermt3 protein_coding Interval_171754 chr9 120739255 120739978 + 0 NA Intergenic Intergenic 11527 ENSMUSG00000111831.1 ENSMUSG00000111831 ENSMUST00000215385 Gm47064 lincRNA Interval_106160 chr3 93824590 93825046 + 0 NA Intergenic Intergenic -1202 ENSMUSG00000058005.3 ENSMUSG00000058005 ENSMUST00000081780 Tdpoz3 protein_coding Interval_2092 chr1 36353613 36354637 + 0 NA TTS (ENSMUSG00000010453.12) protein_coding-TTS (ENSMUSG00000010453.12) -5367 ENSMUSG00000098680.1 ENSMUSG00000098680 ENSMUST00000184898 Mir6898 miRNA Interval_20950 chr10 122693252 122694615 + 0 NA intron (ENSMUSG00000034613.12, intron 1 of 5) protein_coding-intron (ENSMUSG00000034613.12, intron 1 of 9) 14618 ENSMUSG00000099225.1 ENSMUSG00000099225 ENSMUST00000185165 Mir8104 miRNA Interval_148514 chr7 82016384 82017564 + 0 NA Intergenic Intergenic -24667 ENSMUSG00000025105.10 ENSMUSG00000025105 ENSMUST00000026096 Bnc1 protein_coding Interval_29089 chr11 80247529 80248457 + 0 NA intron (ENSMUSG00000017686.17, intron 12 of 14) protein_coding-intron (ENSMUSG00000017686.17, intron 13 of 19) -6708 ENSMUSG00000017686.17 ENSMUSG00000017686 ENSMUST00000236882 Rhot1 protein_coding Interval_53190 chr14 55024353 55024660 + 0 NA TTS (ENSMUSG00000022204.9) protein_coding-TTS (ENSMUSG00000022204.9) 3617 ENSMUSG00000022204.9 ENSMUSG00000022204 ENSMUST00000226258 Ngdn protein_coding Interval_149228 chr7 96438865 96439135 + 0 NA TTS (ENSMUSG00000048078.16) protein_coding-TTS (ENSMUSG00000048078.16) -2983 ENSMUSG00000082780.2 ENSMUSG00000082780 ENSMUST00000117302 Rps11-ps5 processed_pseudogene Interval_1991 chr1 35713660 35713906 + 0 NA Intergenic Intergenic -47819 ENSMUSG00000064601.1 ENSMUSG00000064601 ENSMUST00000082667 Gm25634 snRNA Interval_163917 chr9 28485824 28486854 + 0 NA intron (ENSMUSG00000062257.13, intron 1 of 2) protein_coding-intron (ENSMUSG00000062257.13, intron 1 of 6) 193591 ENSMUSG00000106021.1 ENSMUSG00000106021 ENSMUST00000199274 Gm44316 miRNA Interval_33508 chr11 116953964 116955085 + 0 NA intron (ENSMUSG00000043857.16, intron 2 of 5) protein_coding-intron (ENSMUSG00000043857.16, intron 8 of 17) 7189 ENSMUSG00000043857.16 ENSMUSG00000043857 ENSMUST00000126757 Mgat5b protein_coding Interval_36889 chr12 54984627 54986622 + 0 NA TTS (ENSMUSG00000092233.1) protein_coding-TTS (ENSMUSG00000092233.1) 905 ENSMUSG00000092233.1 ENSMUSG00000092233 ENSMUST00000173803 Gm20403 protein_coding Interval_149021 chr7 92147676 92147941 + 0 NA intron (ENSMUSG00000052572.19, intron 12 of 21) protein_coding-intron (ENSMUSG00000052572.19, intron 13 of 22) -28297 ENSMUSG00000109382.1 ENSMUSG00000109382 ENSMUST00000207593 4930567K12Rik antisense Interval_115890 chr4 105880397 105880830 + 0 NA Intergenic Intergenic 90079 ENSMUSG00000083780.8 ENSMUSG00000083780 ENSMUST00000119740 Gm12728 protein_coding Interval_73831 chr17 44251664 44251870 + 0 NA TTS (ENSMUSG00000023959.10) protein_coding-TTS (ENSMUSG00000023959.10) 116136 ENSMUSG00000117106.1 ENSMUSG00000117106 ENSMUST00000233110 Gm49872 lincRNA Interval_137318 chr6 71293173 71294255 + 0 NA promoter-TSS (ENSMUSG00000073018.6) transcribed_unprocessed_pseudogene-promoter-TSS (ENSMUSG00000073018.6) -6411 ENSMUSG00000073018.6 ENSMUSG00000073018 ENSMUST00000238902 Gm1070 transcribed_unprocessed_pseudogene Interval_150228 chr7 108578827 108579049 + 0 NA TTS (ENSMUSG00000109471.1) processed_pseudogene-TTS (ENSMUSG00000109471.1) 2544 ENSMUSG00000109471.1 ENSMUSG00000109471 ENSMUST00000207067 Gm19127 processed_pseudogene Interval_160001 chr8 105673938 105674899 + 0 NA intron (ENSMUSG00000005698.15, intron 5 of 9) protein_coding-intron (ENSMUSG00000005698.15, intron 7 of 11) -1593 ENSMUSG00000005698.15 ENSMUSG00000005698 ENSMUST00000156436 Ctcf protein_coding Interval_37007 chr12 56296215 56297061 + 0 NA Intergenic Intergenic -29434 ENSMUSG00000088389.1 ENSMUSG00000088389 ENSMUST00000157764 Gm24685 misc_RNA Interval_58386 chr15 34066831 34068332 + 0 NA Intergenic Intergenic 14463 ENSMUSG00000115440.1 ENSMUSG00000115440 ENSMUST00000227515 Gm49091 processed_pseudogene Interval_117633 chr4 125153569 125154099 + 0 NA Intergenic Intergenic -31314 ENSMUSG00000042677.7 ENSMUSG00000042677 ENSMUST00000131685 Zc3h12a protein_coding Interval_153153 chr7 141804708 141805024 + 0 NA intron (ENSMUSG00000037974.16, intron 28 of 49) protein_coding-intron (ENSMUSG00000037974.16, intron 28 of 49) 15855 ENSMUSG00000037974.16 ENSMUSG00000037974 ENSMUST00000163321 Muc5ac protein_coding Interval_63036 chr15 98762142 98763766 + 0 NA promoter-TSS (ENSMUSG00000051853.10) protein_coding-promoter-TSS (ENSMUSG00000051853.10) 38 ENSMUSG00000051853.10 ENSMUSG00000051853 ENSMUST00000156572 Arf3 protein_coding Interval_24464 chr11 33464287 33464609 + 0 NA intron (ENSMUSG00000040594.19, intron 12 of 20) protein_coding-intron (ENSMUSG00000040594.19, intron 12 of 27) -11934 ENSMUSG00000040594.19 ENSMUSG00000040594 ENSMUST00000147751 Ranbp17 protein_coding Interval_91685 chr2 47669520 47670283 + 0 NA Intergenic Intergenic 127917 ENSMUSG00000092853.1 ENSMUSG00000092853 ENSMUST00000175112 Gm25959 miRNA Interval_66748 chr16 36985696 36986050 + 0 NA intron (ENSMUSG00000047746.14, intron 1 of 3) protein_coding-intron (ENSMUSG00000047746.14, intron 1 of 3) -7097 ENSMUSG00000047746.14 ENSMUSG00000047746 ENSMUST00000114806 Fbxo40 protein_coding Interval_85076 chr19 22284444 22285969 + 0 NA intron (ENSMUSG00000052387.16, intron 1 of 24) protein_coding-intron (ENSMUSG00000052387.16, intron 1 of 24) -49588 ENSMUSG00000088558.1 ENSMUSG00000088558 ENSMUST00000157933 Gm22506 snoRNA Interval_87861 chr19 56641453 56642178 + 0 NA Intergenic Intergenic 22796 ENSMUSG00000117890.1 ENSMUSG00000117890 ENSMUST00000237615 Gm32441 lincRNA Interval_123150 chr5 30135589 30136016 + 0 NA promoter-TSS (ENSMUSG00000025745.12) protein_coding-promoter-TSS (ENSMUSG00000025745.12) 13741 ENSMUSG00000025745.12 ENSMUSG00000025745 ENSMUST00000196156 Hadha protein_coding Interval_142280 chr6 140412940 140414115 + 0 NA Intergenic Intergenic -6644 ENSMUSG00000107891.1 ENSMUSG00000107891 ENSMUST00000204085 Gm5051 processed_pseudogene Interval_77392 chr17 88396891 88398516 + 0 NA Intergenic Intergenic -4771 ENSMUSG00000095624.1 ENSMUSG00000095624 ENSMUST00000093636 Gm23947 snRNA Interval_39467 chr12 88059065 88059277 + 0 NA promoter-TSS (ENSMUSG00000113720.1) processed_pseudogene-promoter-TSS (ENSMUSG00000113720.1) 78 ENSMUSG00000113720.1 ENSMUSG00000113720 ENSMUST00000223445 Gm46995 processed_pseudogene Interval_139558 chr6 101029206 101031007 + 0 NA intron (ENSMUSG00000107887.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000107887.1, intron 1 of 2) 2084 ENSMUSG00000107887.1 ENSMUSG00000107887 ENSMUST00000204767 Gm43950 lincRNA Interval_70733 chr17 14021181 14021379 + 0 NA Intergenic Intergenic -17576 ENSMUSG00000101307.2 ENSMUSG00000101307 ENSMUST00000189454 Gm7356 protein_coding Interval_133981 chr6 17280767 17282194 + 0 NA exon (ENSMUSG00000000058.6, exon 1 of 3) protein_coding-exon (ENSMUSG00000000058.6, exon 1 of 3) 121 ENSMUSG00000000058.6 ENSMUSG00000000058 ENSMUST00000115462 Cav2 protein_coding Interval_43516 chr13 32465843 32466466 + 0 NA Intergenic Intergenic 70261 ENSMUSG00000113449.1 ENSMUSG00000113449 ENSMUST00000221163 Gm48073 lincRNA Interval_172044 chr9 123829435 123829948 + 0 NA exon (ENSMUSG00000025241.16, exon 9 of 19) protein_coding-exon (ENSMUSG00000025241.16, exon 9 of 19) 14915 ENSMUSG00000025241.16 ENSMUSG00000025241 ENSMUST00000216136 Fyco1 protein_coding Interval_49428 chr13 111913825 111914040 + 0 NA Intergenic Intergenic -29755 ENSMUSG00000082433.2 ENSMUSG00000082433 ENSMUST00000122415 Gm9025 processed_pseudogene Interval_28025 chr11 72324260 72325874 + 0 NA Intergenic Intergenic 10623 ENSMUSG00000070388.3 ENSMUSG00000070388 ENSMUST00000108504 Fbxo39 protein_coding Interval_134086 chr6 19143639 19144099 + 0 NA Intergenic Intergenic 24400 ENSMUSG00000107349.1 ENSMUSG00000107349 ENSMUST00000201932 Gm6655 processed_pseudogene Interval_12048 chr1 189094985 189095998 + 0 NA Intergenic Intergenic -15787 ENSMUSG00000104464.1 ENSMUSG00000104464 ENSMUST00000192327 Gm18698 processed_pseudogene Interval_170164 chr9 105764353 105764613 + 0 NA intron (ENSMUSG00000043719.14, intron 10 of 36) protein_coding-intron (ENSMUSG00000043719.14, intron 10 of 36) 36698 ENSMUSG00000102877.1 ENSMUSG00000102877 ENSMUST00000195709 Gm38314 TEC Interval_143774 chr7 16231028 16231291 + 0 NA Intergenic Intergenic 2259 ENSMUSG00000110413.1 ENSMUSG00000110413 ENSMUST00000211486 Gm45409 processed_pseudogene Interval_120093 chr4 141779480 141779721 + 0 NA intron (ENSMUSG00000040697.10, intron 4 of 14) protein_coding-intron (ENSMUSG00000040697.10, intron 4 of 14) 11331 ENSMUSG00000040697.10 ENSMUSG00000040697 ENSMUST00000153880 Dnajc16 protein_coding Interval_142954 chr6 147287991 147288238 + 0 NA Intergenic Intergenic 16277 ENSMUSG00000081023.1 ENSMUSG00000081023 ENSMUST00000118025 Gm15766 processed_pseudogene Interval_80346 chr18 39697013 39697405 + 0 NA intron (ENSMUSG00000117922.1, intron 2 of 2) lincRNA-intron (ENSMUSG00000117922.1, intron 2 of 2) 36332 ENSMUSG00000117983.1 ENSMUSG00000117983 ENSMUST00000236724 Gm50398 TEC Interval_54887 chr14 75998294 75999801 + 0 NA intron (ENSMUSG00000067995.4, intron 2 of 7) protein_coding-intron (ENSMUSG00000067995.4, intron 2 of 7) 11818 ENSMUSG00000067995.4 ENSMUSG00000067995 ENSMUST00000088922 Gtf2f2 protein_coding Interval_137130 chr6 67881178 67881718 + 0 NA Intergenic Intergenic 2162 ENSMUSG00000105005.1 ENSMUSG00000105005 ENSMUST00000196364 Gm9729 processed_pseudogene Interval_150196 chr7 107862915 107863129 + 0 NA promoter-TSS (ENSMUSG00000066245.5) processed_pseudogene-promoter-TSS (ENSMUSG00000066245.5) -17 ENSMUSG00000066245.5 ENSMUSG00000066245 ENSMUST00000122364 Gm10156 processed_pseudogene Interval_103362 chr3 40444199 40444412 + 0 NA Intergenic Intergenic 65469 ENSMUSG00000037884.6 ENSMUSG00000037884 ENSMUST00000202778 1700017G19Rik lincRNA Interval_70116 chr17 5430795 5431079 + 0 NA intron (ENSMUSG00000004945.15, intron 3 of 3) protein_coding-intron (ENSMUSG00000004945.15, intron 3 of 3) 9322 ENSMUSG00000004945.15 ENSMUSG00000004945 ENSMUST00000185896 Tmem242 protein_coding Interval_124601 chr5 52231828 52232838 + 0 NA intron (ENSMUSG00000097145.5, intron 3 of 3) processed_transcript-intron (ENSMUSG00000097145.5, intron 5 of 5) -7003 ENSMUSG00000105328.1 ENSMUSG00000105328 ENSMUST00000197541 Gm43180 TEC Interval_31986 chr11 104315575 104316803 + 0 NA intron (ENSMUSG00000018411.17, intron 7 of 10) protein_coding-intron (ENSMUSG00000018411.17, intron 8 of 11) -56828 ENSMUSG00000085134.1 ENSMUSG00000085134 ENSMUST00000137561 Gm11659 antisense Interval_97536 chr2 139422654 139422859 + 0 NA intron (ENSMUSG00000085071.1, intron 2 of 5) processed_transcript-intron (ENSMUSG00000085071.1, intron 2 of 5) -38416 ENSMUSG00000081799.1 ENSMUSG00000081799 ENSMUST00000117817 Gm14071 processed_pseudogene Interval_3157 chr1 54184957 54185732 + 0 NA intron (ENSMUSG00000042807.15, intron 1 of 3) protein_coding-intron (ENSMUSG00000042807.15, intron 1 of 28) -30248 ENSMUSG00000102868.1 ENSMUSG00000102868 ENSMUST00000192858 Gm37633 TEC Interval_7568 chr1 132256725 132257230 + 0 NA TTS (ENSMUSG00000079330.9) protein_coding-TTS (ENSMUSG00000079330.9) 23434 ENSMUSG00000101549.1 ENSMUSG00000101549 ENSMUST00000185761 Gm29630 lincRNA Interval_48174 chr13 96996868 96997895 + 0 NA Intergenic Intergenic 17918 ENSMUSG00000113934.1 ENSMUSG00000113934 ENSMUST00000222278 Gm48609 processed_pseudogene Interval_137735 chr6 81941950 81942316 + 0 NA exon (ENSMUSG00000035125.10, exon 1 of 2) protein_coding-exon (ENSMUSG00000035125.10, exon 1 of 2) 11418 ENSMUSG00000035125.10 ENSMUSG00000035125 ENSMUST00000129678 Gcfc2 protein_coding Interval_57218 chr15 7888683 7889371 + 0 NA intron (ENSMUSG00000039828.7, intron 14 of 17) protein_coding-intron (ENSMUSG00000039828.7, intron 14 of 17) 78181 ENSMUSG00000022144.4 ENSMUSG00000022144 ENSMUST00000022744 Gdnf protein_coding Interval_87742 chr19 55555830 55557067 + 0 NA intron (ENSMUSG00000024983.10, intron 8 of 8) protein_coding-intron (ENSMUSG00000024983.10, intron 7 of 7) -185816 ENSMUSG00000024985.20 ENSMUSG00000024985 ENSMUST00000148666 Tcf7l2 protein_coding Interval_45840 chr13 58475140 58476853 + 0 NA Intergenic Intergenic 32975 ENSMUSG00000114654.1 ENSMUSG00000114654 ENSMUST00000225848 Gm47918 lincRNA Interval_48313 chr13 98030274 98031992 + 0 NA intron (ENSMUSG00000021662.11, intron 7 of 34) protein_coding-intron (ENSMUSG00000021662.11, intron 7 of 35) -14716 ENSMUSG00000021662.11 ENSMUSG00000021662 ENSMUST00000224866 Arhgef28 protein_coding Interval_19651 chr10 107089546 107089818 + 0 NA intron (ENSMUSG00000035948.13, intron 1 of 15) protein_coding-intron (ENSMUSG00000035948.13, intron 1 of 10) -27699 ENSMUSG00000112863.1 ENSMUSG00000112863 ENSMUST00000218891 Gm19181 processed_pseudogene Interval_80427 chr18 42106750 42106992 + 0 NA intron (ENSMUSG00000057719.11, intron 3 of 8) protein_coding-intron (ENSMUSG00000057719.11, intron 3 of 8) -36162 ENSMUSG00000057719.11 ENSMUSG00000057719 ENSMUST00000236947 Sh3rf2 protein_coding Interval_90089 chr2 27893762 27894058 + 0 NA intron (ENSMUSG00000026837.16, intron 1 of 65) protein_coding-intron (ENSMUSG00000026837.16, intron 1 of 65) -6858 ENSMUSG00000085766.1 ENSMUSG00000085766 ENSMUST00000154246 2810430I11Rik processed_transcript Interval_79230 chr18 26164466 26165299 + 0 NA intron (ENSMUSG00000117604.1, intron 8 of 13) processed_transcript-intron (ENSMUSG00000117604.1, intron 8 of 13) 157325 ENSMUSG00000117604.1 ENSMUSG00000117604 ENSMUST00000234272 Gm33228 processed_transcript Interval_160655 chr8 111350192 111350783 + 0 NA intron (ENSMUSG00000033579.16, intron 4 of 5) protein_coding-intron (ENSMUSG00000033579.16, intron 4 of 6) -12694 ENSMUSG00000012519.14 ENSMUSG00000012519 ENSMUST00000145862 Mlkl protein_coding Interval_170463 chr9 108143745 108145473 + 0 NA intron (ENSMUSG00000032589.14, intron 1 of 11) protein_coding-intron (ENSMUSG00000032589.14, intron 1 of 11) 7281 ENSMUSG00000102224.5 ENSMUSG00000102224 ENSMUST00000195536 4930447F24Rik processed_transcript Interval_81220 chr18 56580931 56581304 + 0 NA TTS (ENSMUSG00000008301.11) protein_coding-TTS (ENSMUSG00000008301.11) -9625 ENSMUSG00000032900.15 ENSMUSG00000032900 ENSMUST00000235602 Tex43 protein_coding Interval_78814 chr18 20766771 20767473 + 0 NA Intergenic Intergenic -20718 ENSMUSG00000056124.5 ENSMUSG00000056124 ENSMUST00000070080 B4galt6 protein_coding Interval_142466 chr6 142582482 142582726 + 0 NA Intergenic Intergenic -10990 ENSMUSG00000030247.9 ENSMUSG00000030247 ENSMUST00000032374 Kcnj8 protein_coding Interval_91990 chr2 52262066 52262768 + 0 NA intron (ENSMUSG00000026950.18, intron 54 of 164) protein_coding-intron (ENSMUSG00000026950.18, intron 54 of 156) -20660 ENSMUSG00000089609.1 ENSMUSG00000089609 ENSMUST00000158984 Gm22095 miRNA Interval_25286 chr11 46121492 46122047 + 0 NA intron (ENSMUSG00000011256.16, intron 9 of 22) protein_coding-intron (ENSMUSG00000011256.16, intron 9 of 22) -12353 ENSMUSG00000011256.16 ENSMUSG00000011256 ENSMUST00000153410 Adam19 protein_coding Interval_147309 chr7 65728162 65728498 + 0 NA Intergenic Intergenic 34854 ENSMUSG00000078681.10 ENSMUSG00000078681 ENSMUST00000206361 Tm2d3 protein_coding Interval_71188 chr17 21026301 21026806 + 0 NA TTS (ENSMUSG00000067942.6) protein_coding-TTS (ENSMUSG00000067942.6) 17509 ENSMUSG00000067942.6 ENSMUSG00000067942 ENSMUST00000232663 Zfp160 protein_coding Interval_119842 chr4 140419746 140420546 + 0 NA Intergenic Intergenic -2378 ENSMUSG00000086437.2 ENSMUSG00000086437 ENSMUST00000135716 Gm13021 lincRNA Interval_88068 chr19 58794185 58794598 + 0 NA promoter-TSS (ENSMUSG00000026931.10) protein_coding-promoter-TSS (ENSMUSG00000026931.10) -1108 ENSMUSG00000026931.10 ENSMUSG00000026931 ENSMUST00000166692 1700019N19Rik protein_coding Interval_38766 chr12 82165782 82166639 + 0 NA Intergenic Intergenic 2895 ENSMUSG00000113746.1 ENSMUSG00000113746 ENSMUST00000221198 Gm48242 lincRNA Interval_163171 chr9 16606259 16607446 + 0 NA Intergenic Intergenic -105567 ENSMUSG00000074505.6 ENSMUSG00000074505 ENSMUST00000213517 Fat3 protein_coding Interval_17146 chr10 72650658 72651377 + 0 NA Intergenic Intergenic -5227 ENSMUSG00000019923.14 ENSMUSG00000019923 ENSMUST00000219352 Zwint protein_coding Interval_93034 chr2 69679751 69680890 + 0 NA intron (ENSMUSG00000075307.3, intron 5 of 5) protein_coding-intron (ENSMUSG00000075307.3, intron 5 of 5) 10200 ENSMUSG00000075307.3 ENSMUSG00000075307 ENSMUST00000100050 Klhl41 protein_coding Interval_56001 chr14 103915409 103915936 + 0 NA Intergenic Intergenic -32424 ENSMUSG00000104311.1 ENSMUSG00000104311 ENSMUST00000194770 Gm37910 TEC Interval_29756 chr11 86591689 86592425 + 0 NA intron (ENSMUSG00000018171.9, intron 1 of 2) protein_coding-intron (ENSMUSG00000018171.9, intron 10 of 11) -7899 ENSMUSG00000065455.1 ENSMUSG00000065455 ENSMUST00000083521 Mir21a miRNA Interval_31727 chr11 102486727 102487611 + 0 NA intron (ENSMUSG00000034621.14, intron 7 of 7) protein_coding-intron (ENSMUSG00000034621.14, intron 5 of 5) 5440 ENSMUSG00000082487.1 ENSMUSG00000082487 ENSMUST00000117568 Gm11628 processed_pseudogene Interval_56549 chr14 120287100 120289450 + 0 NA intron (ENSMUSG00000022139.17, intron 1 of 1) protein_coding-intron (ENSMUSG00000022139.17, intron 1 of 8) -90966 ENSMUSG00000022139.17 ENSMUSG00000022139 ENSMUST00000227153 Mbnl2 protein_coding Interval_22499 chr11 11152454 11152818 + 0 NA intron (ENSMUSG00000050830.17, intron 2 of 4) protein_coding-intron (ENSMUSG00000050830.17, intron 1 of 3) 12122 ENSMUSG00000088861.1 ENSMUSG00000088861 ENSMUST00000158236 Gm23065 rRNA Interval_153234 chr7 142671862 142672705 + 0 NA Intergenic Intergenic -2341 ENSMUSG00000115302.1 ENSMUSG00000115302 ENSMUST00000228850 Gm49394 protein_coding Interval_107591 chr3 108763408 108764283 + 0 NA intron (ENSMUSG00000049565.16, intron 1 of 2) protein_coding-intron (ENSMUSG00000049565.16, intron 6 of 9) 11319 ENSMUSG00000049565.16 ENSMUSG00000049565 ENSMUST00000147916 Aknad1 protein_coding Interval_75027 chr17 61437874 61438459 + 0 NA Intergenic Intergenic 40856 ENSMUSG00000117016.1 ENSMUSG00000117016 ENSMUST00000233539 Gm6174 processed_pseudogene Interval_166969 chr9 64227774 64228024 + 0 NA promoter-TSS (ENSMUSG00000111160.1) lincRNA-promoter-TSS (ENSMUSG00000111160.1) -440 ENSMUSG00000111160.1 ENSMUSG00000111160 ENSMUST00000214497 Gm48855 lincRNA Interval_116344 chr4 110022120 110022875 + 0 NA Intergenic Intergenic 44444 ENSMUSG00000047143.3 ENSMUSG00000047143 ENSMUST00000061187 Dmrta2 protein_coding Interval_91605 chr2 44524330 44526330 + 0 NA Intergenic Intergenic 96395 ENSMUSG00000088124.1 ENSMUSG00000088124 ENSMUST00000157499 Gm22867 snRNA Interval_8247 chr1 136717996 136718224 + 0 NA intron (ENSMUSG00000097448.1, intron 2 of 4) lincRNA-intron (ENSMUSG00000097448.1, intron 2 of 4) 20736 ENSMUSG00000092912.1 ENSMUSG00000092912 ENSMUST00000175171 Gm24086 snRNA Interval_43545 chr13 32974942 32975979 + 0 NA intron (ENSMUSG00000042842.11, intron 5 of 6) protein_coding-intron (ENSMUSG00000042842.11, intron 5 of 6) 3962 ENSMUSG00000042842.11 ENSMUSG00000042842 ENSMUST00000222967 Serpinb6b protein_coding Interval_23598 chr11 23665375 23666713 + 0 NA promoter-TSS (ENSMUSG00000020283.5) protein_coding-promoter-TSS (ENSMUSG00000020283.5) -371 ENSMUSG00000020283.5 ENSMUSG00000020283 ENSMUST00000146533 Pex13 protein_coding Interval_172949 chrX 57381079 57381928 + 0 NA Intergenic Intergenic 10016 ENSMUSG00000065110.4 ENSMUSG00000065110 ENSMUST00000083176 Snord61 snoRNA Interval_110558 chr4 3874824 3875575 + 0 NA Intergenic Intergenic -3094 ENSMUSG00000078365.5 ENSMUSG00000078365 ENSMUST00000105158 Mos protein_coding Interval_86586 chr19 41898748 41899282 + 0 NA Intergenic Intergenic -2842 ENSMUSG00000035049.4 ENSMUSG00000035049 ENSMUST00000038677 Rrp12 protein_coding Interval_72946 chr17 33713147 33713397 + 0 NA intron (ENSMUSG00000079557.11, intron 1 of 6) protein_coding-intron (ENSMUSG00000079557.11, intron 1 of 5) 5373 ENSMUSG00000079557.11 ENSMUSG00000079557 ENSMUST00000173392 Marchf2 protein_coding Interval_26372 chr11 57464805 57465569 + 0 NA Intergenic Intergenic 16080 ENSMUSG00000082476.1 ENSMUSG00000082476 ENSMUST00000118824 Gm12242 processed_pseudogene Interval_143334 chr7 5585828 5586053 + 0 NA Intergenic Intergenic -12865 ENSMUSG00000092336.1 ENSMUSG00000092336 ENSMUST00000172862 Vmn1r-ps40 unprocessed_pseudogene Interval_143340 chr7 5898790 5900395 + 0 NA Intergenic Intergenic -5427 ENSMUSG00000092393.2 ENSMUSG00000092393 ENSMUST00000174652 Gm20399 processed_pseudogene Interval_169592 chr9 99330876 99331121 + 0 NA intron (ENSMUSG00000037681.13, intron 5 of 22) protein_coding-intron (ENSMUSG00000037681.13, intron 5 of 22) 8172 ENSMUSG00000103452.1 ENSMUSG00000103452 ENSMUST00000191694 1700008A23Rik TEC Interval_79480 chr18 32246321 32246821 + 0 NA exon (ENSMUSG00000024382.13, exon 7 of 15) protein_coding-exon (ENSMUSG00000024382.13, exon 7 of 15) 6217 ENSMUSG00000024382.13 ENSMUSG00000024382 ENSMUST00000129023 Ercc3 protein_coding Interval_124932 chr5 61031169 61031451 + 0 NA Intergenic Intergenic -85661 ENSMUSG00000105903.1 ENSMUSG00000105903 ENSMUST00000199566 1700014F14Rik lincRNA Interval_109315 chr3 138859239 138861082 + 0 NA promoter-TSS (ENSMUSG00000028152.10) protein_coding-promoter-TSS (ENSMUSG00000028152.10) -30998 ENSMUSG00000086123.3 ENSMUSG00000086123 ENSMUST00000153140 Gm16060 processed_pseudogene Interval_163577 chr9 22315754 22317296 + 0 NA Intergenic Intergenic 4852 ENSMUSG00000094627.2 ENSMUSG00000094627 ENSMUST00000178676 Gm10182 processed_pseudogene Interval_158008 chr8 77958868 77959379 + 0 NA Intergenic Intergenic -84887 ENSMUSG00000110382.1 ENSMUSG00000110382 ENSMUST00000209933 Gm29895 lincRNA Interval_50100 chr14 7986824 7987301 + 0 NA intron (ENSMUSG00000025279.7, intron 2 of 7) protein_coding-intron (ENSMUSG00000025279.7, intron 2 of 7) -9840 ENSMUSG00000025279.7 ENSMUSG00000025279 ENSMUST00000145234 Dnase1l3 protein_coding Interval_87445 chr19 51220595 51220938 + 0 NA Intergenic Intergenic 19030 ENSMUSG00000065143.1 ENSMUSG00000065143 ENSMUST00000083209 Gm25644 snRNA Interval_54119 chr14 65485652 65485921 + 0 NA Intergenic Intergenic -60626 ENSMUSG00000045731.6 ENSMUSG00000045731 ENSMUST00000224594 Pnoc protein_coding Interval_73988 chr17 45883975 45884236 + 0 NA Intergenic Intergenic -1241 ENSMUSG00000117048.1 ENSMUSG00000117048 ENSMUST00000233085 Gm41584 lincRNA Interval_34795 chr12 11257413 11257709 + 0 NA intron (ENSMUSG00000051235.10, intron 1 of 1) protein_coding-intron (ENSMUSG00000051235.10, intron 3 of 13) -6708 ENSMUSG00000051235.10 ENSMUSG00000051235 ENSMUST00000219537 Gen1 protein_coding Interval_7232 chr1 128082671 128083729 + 0 NA intron (ENSMUSG00000036086.16, intron 2 of 2) protein_coding-intron (ENSMUSG00000036086.16, intron 2 of 20) 6131 ENSMUSG00000102782.1 ENSMUSG00000102782 ENSMUST00000194969 Gm37625 TEC Interval_42218 chr13 10061414 10061633 + 0 NA intron (ENSMUSG00000046159.16, intron 3 of 4) protein_coding-intron (ENSMUSG00000046159.16, intron 3 of 4) 9343 ENSMUSG00000113680.1 ENSMUSG00000113680 ENSMUST00000221804 Gm47405 sense_intronic Interval_31779 chr11 102800579 102800972 + 0 NA TTS (ENSMUSG00000034520.14) protein_coding-TTS (ENSMUSG00000034520.14) 5013 ENSMUSG00000034520.14 ENSMUSG00000034520 ENSMUST00000131164 Gjc1 protein_coding Interval_109148 chr3 136777543 136778091 + 0 NA intron (ENSMUSG00000028161.17, intron 1 of 12) protein_coding-intron (ENSMUSG00000028161.17, intron 1 of 13) -17857 ENSMUSG00000105545.1 ENSMUSG00000105545 ENSMUST00000198822 4930599N24Rik TEC Interval_13085 chr10 11242802 11244174 + 0 NA Intergenic Intergenic -30509 ENSMUSG00000090070.1 ENSMUSG00000090070 ENSMUST00000161579 Gm16577 antisense Interval_38381 chr12 78204958 78206244 + 0 NA intron (ENSMUSG00000099418.3, intron 5 of 5) protein_coding-intron (ENSMUSG00000099418.3, intron 3 of 3) 11359 ENSMUSG00000099418.3 ENSMUSG00000099418 ENSMUST00000185497 Gm6657 protein_coding Interval_121412 chr4 155624251 155625290 + 0 NA promoter-TSS (ENSMUSG00000029062.14) protein_coding-promoter-TSS (ENSMUSG00000029062.14) -290 ENSMUSG00000086682.1 ENSMUSG00000086682 ENSMUST00000154931 Gm16023 processed_transcript Interval_51441 chr14 27591611 27592548 + 0 NA Intergenic Intergenic -39921 ENSMUSG00000114482.1 ENSMUSG00000114482 ENSMUST00000225617 Gm7604 processed_pseudogene Interval_77642 chr17 93499566 93499952 + 0 NA Intergenic Intergenic -108061 ENSMUSG00000117368.1 ENSMUSG00000117368 ENSMUST00000234726 Gm50001 processed_pseudogene Interval_124751 chr5 53665084 53665284 + 0 NA Intergenic Intergenic 26552 ENSMUSG00000039191.12 ENSMUSG00000039191 ENSMUST00000202092 Rbpj protein_coding Interval_97210 chr2 132268971 132269583 + 0 NA intron (ENSMUSG00000058793.14, intron 1 of 3) protein_coding-intron (ENSMUSG00000058793.14, intron 1 of 12) 6036 ENSMUSG00000058793.14 ENSMUSG00000058793 ENSMUST00000138194 Cds2 protein_coding Interval_91576 chr2 43734892 43735606 + 0 NA Intergenic Intergenic -13620 ENSMUSG00000049744.15 ENSMUSG00000049744 ENSMUST00000128630 Arhgap15 protein_coding Interval_47244 chr13 79285665 79285850 + 0 NA promoter-TSS (ENSMUSG00000101416.1) lincRNA-promoter-TSS (ENSMUSG00000101416.1) 45 ENSMUSG00000101416.1 ENSMUSG00000101416 ENSMUST00000185308 Gm29318 lincRNA Interval_124715 chr5 53530598 53531456 + 0 NA intron (ENSMUSG00000039191.12, intron 1 of 6) protein_coding-intron (ENSMUSG00000039191.12, intron 1 of 6) -8296 ENSMUSG00000106807.1 ENSMUSG00000106807 ENSMUST00000200950 Gm10441 antisense Interval_45337 chr13 54549572 54550597 + 0 NA intron (ENSMUSG00000043183.18, intron 2 of 2) protein_coding-intron (ENSMUSG00000043183.18, intron 8 of 8) 15249 ENSMUSG00000025871.18 ENSMUSG00000025871 ENSMUST00000126295 4833439L19Rik protein_coding Interval_89991 chr2 27124282 27124759 + 0 NA intron (ENSMUSG00000009216.7, intron 1 of 2) protein_coding-intron (ENSMUSG00000009216.7, intron 1 of 2) 17971 ENSMUSG00000009216.7 ENSMUSG00000009216 ENSMUST00000151224 Fam163b protein_coding Interval_115236 chr4 94694957 94695335 + 0 NA Intergenic Intergenic 15966 ENSMUSG00000028576.12 ENSMUSG00000028576 ENSMUST00000152289 Ift74 protein_coding Interval_31348 chr11 100185222 100185543 + 0 NA Intergenic Intergenic 7864 ENSMUSG00000051617.3 ENSMUSG00000051617 ENSMUST00000059707 Krt9 protein_coding Interval_46744 chr13 69825548 69825768 + 0 NA Intergenic Intergenic 23263 ENSMUSG00000021598.9 ENSMUSG00000021598 ENSMUST00000220649 Med10 protein_coding Interval_83655 chr19 3512109 3512339 + 0 NA intron (ENSMUSG00000024908.15, intron 6 of 12) protein_coding-intron (ENSMUSG00000024908.15, intron 6 of 22) -14880 ENSMUSG00000114302.1 ENSMUSG00000114302 ENSMUST00000223977 Gm48683 antisense Interval_160233 chr8 107323283 107324441 + 0 NA intron (ENSMUSG00000003847.16, intron 2 of 14) protein_coding-intron (ENSMUSG00000003847.16, intron 1 of 12) 30392 ENSMUSG00000003847.16 ENSMUSG00000003847 ENSMUST00000147588 Nfat5 protein_coding Interval_39314 chr12 86654726 86655521 + 0 NA promoter-TSS (ENSMUSG00000075832.1) snRNA-promoter-TSS (ENSMUSG00000075832.1) -2 ENSMUSG00000075832.1 ENSMUSG00000075832 ENSMUST00000101884 Gm22004 snRNA Interval_131880 chr5 140566011 140566201 + 0 NA Intergenic Intergenic -1035 ENSMUSG00000036586.6 ENSMUSG00000036586 ENSMUST00000042993 Grifin protein_coding Interval_86418 chr19 40343065 40343507 + 0 NA intron (ENSMUSG00000025006.18, intron 17 of 29) protein_coding-intron (ENSMUSG00000025006.18, intron 11 of 21) 33588 ENSMUSG00000025006.18 ENSMUSG00000025006 ENSMUST00000225293 Sorbs1 protein_coding Interval_127481 chr5 104344977 104345467 + 0 NA Intergenic Intergenic 19893 ENSMUSG00000053863.3 ENSMUSG00000053863 ENSMUST00000066207 Mepe protein_coding Interval_48006 chr13 95047932 95048245 + 0 NA intron (ENSMUSG00000021684.17, intron 12 of 20) protein_coding-intron (ENSMUSG00000021684.17, intron 11 of 20) 23787 ENSMUSG00000113070.1 ENSMUSG00000113070 ENSMUST00000220923 Gm48420 antisense Interval_20917 chr10 122001222 122001416 + 0 NA intron (ENSMUSG00000020121.15, intron 1 of 3) protein_coding-intron (ENSMUSG00000020121.15, intron 1 of 21) 45996 ENSMUSG00000020121.15 ENSMUSG00000020121 ENSMUST00000162710 Srgap1 protein_coding Interval_113583 chr4 56847295 56847591 + 0 NA intron (ENSMUSG00000038816.14, intron 2 of 11) protein_coding-intron (ENSMUSG00000038816.14, intron 2 of 18) -8859 ENSMUSG00000038816.14 ENSMUSG00000038816 ENSMUST00000132764 Ctnnal1 protein_coding Interval_1195 chr1 16867007 16869020 + 0 NA Intergenic Intergenic -30172 ENSMUSG00000101640.1 ENSMUSG00000101640 ENSMUST00000186604 Gm28376 antisense Interval_54988 chr14 76685617 76686856 + 0 NA intron (ENSMUSG00000101009.6, intron 1 of 1) processed_transcript-intron (ENSMUSG00000101009.6, intron 3 of 3) 8582 ENSMUSG00000101009.6 ENSMUSG00000101009 ENSMUST00000191384 1700108F19Rik processed_transcript Interval_90487 chr2 30747082 30748312 + 0 NA Intergenic Intergenic 26487 ENSMUSG00000093091.1 ENSMUSG00000093091 ENSMUST00000175350 Mir3089 miRNA Interval_41576 chr12 116470284 116470556 + 0 NA Intergenic Intergenic 6579 ENSMUSG00000084629.1 ENSMUSG00000084629 ENSMUST00000122680 Gm25112 snRNA Interval_160344 chr8 108609829 108610109 + 0 NA intron (ENSMUSG00000038872.10, intron 4 of 15) protein_coding-intron (ENSMUSG00000038872.10, intron 4 of 15) -25374 ENSMUSG00000110613.1 ENSMUSG00000110613 ENSMUST00000211953 Lncbate1 lincRNA Interval_83955 chr19 5800209 5800688 + 0 NA exon (ENSMUSG00000092341.3, exon 1 of 1) lincRNA-exon (ENSMUSG00000092341.3, exon 1 of 1) -1363 ENSMUSG00000098462.1 ENSMUSG00000098462 ENSMUST00000184740 Gm27694 misc_RNA Interval_149481 chr7 98967961 98969309 + 0 NA intron (ENSMUSG00000035354.9, intron 7 of 10) protein_coding-intron (ENSMUSG00000035354.9, intron 12 of 14) 32741 ENSMUSG00000089501.1 ENSMUSG00000089501 ENSMUST00000158876 Gm23479 snoRNA Interval_155408 chr8 33356980 33357984 + 0 NA intron (ENSMUSG00000031583.13, intron 1 of 33) protein_coding-intron (ENSMUSG00000031583.13, intron 1 of 33) -26932 ENSMUSG00000031583.13 ENSMUSG00000031583 ENSMUST00000209293 Wrn protein_coding Interval_47826 chr13 93561132 93561541 + 0 NA Intergenic Intergenic -61599 ENSMUSG00000021690.10 ENSMUSG00000021690 ENSMUST00000220513 Jmy protein_coding Interval_150486 chr7 111114175 111114430 + 0 NA intron (ENSMUSG00000110424.1, intron 2 of 2) processed_transcript-intron (ENSMUSG00000110424.1, intron 2 of 2) 5292 ENSMUSG00000118555.1 ENSMUSG00000118555 ENSMUST00000238860 AC150312.1 transcribed_processed_pseudogene Interval_44261 chr13 43171166 43173693 + 0 NA promoter-TSS (ENSMUSG00000021368.15) protein_coding-promoter-TSS (ENSMUSG00000021368.15) -12877 ENSMUSG00000021368.15 ENSMUSG00000021368 ENSMUST00000221095 Tbc1d7 protein_coding Interval_42823 chr13 20048844 20050326 + 0 NA Intergenic Intergenic -53781 ENSMUSG00000050243.6 ENSMUSG00000050243 ENSMUST00000091762 Gm5446 processed_pseudogene Interval_48561 chr13 100260310 100260501 + 0 NA Intergenic Intergenic -14082 ENSMUSG00000071203.6 ENSMUSG00000071203 ENSMUST00000049789 Naip5 protein_coding Interval_95065 chr2 103667434 103668875 + 0 NA intron (ENSMUSG00000032724.5, intron 1 of 16) protein_coding-intron (ENSMUSG00000032724.5, intron 1 of 16) -46881 ENSMUSG00000032724.5 ENSMUSG00000032724 ENSMUST00000131122 Abtb2 protein_coding Interval_75391 chr17 66321751 66322515 + 0 NA Intergenic Intergenic -2621 ENSMUSG00000117010.1 ENSMUSG00000117010 ENSMUST00000233050 Gm49933 processed_pseudogene Interval_73224 chr17 35660802 35661030 + 0 NA promoter-TSS (ENSMUSG00000038838.15) protein_coding-promoter-TSS (ENSMUSG00000038838.15) -866 ENSMUSG00000038838.15 ENSMUSG00000038838 ENSMUST00000165144 Vars2 protein_coding Interval_72561 chr17 30681128 30682079 + 0 NA intron (ENSMUSG00000033826.10, intron 6 of 7) protein_coding-intron (ENSMUSG00000033826.10, intron 18 of 92) 10963 ENSMUSG00000033826.10 ENSMUSG00000033826 ENSMUST00000235567 Dnah8 protein_coding Interval_91827 chr2 49916457 49916958 + 0 NA intron (ENSMUSG00000026765.12, intron 4 of 9) protein_coding-intron (ENSMUSG00000026765.12, intron 4 of 9) -9827 ENSMUSG00000088825.1 ENSMUSG00000088825 ENSMUST00000158200 Gm25223 misc_RNA Interval_62053 chr15 86118009 86118586 + 0 NA intron (ENSMUSG00000035900.18, intron 3 of 18) protein_coding-intron (ENSMUSG00000035900.18, intron 3 of 18) -28237 ENSMUSG00000089680.1 ENSMUSG00000089680 ENSMUST00000159271 Gm15722 antisense Interval_66185 chr16 32202453 32203149 + 0 NA Intergenic Intergenic 22978 ENSMUSG00000075269.5 ENSMUSG00000075269 ENSMUST00000099990 Bex6 protein_coding Interval_92914 chr2 68459225 68459860 + 0 NA intron (ENSMUSG00000027030.15, intron 1 of 15) protein_coding-intron (ENSMUSG00000027030.15, intron 1 of 17) -16540 ENSMUSG00000085182.1 ENSMUSG00000085182 ENSMUST00000153354 Gm13596 antisense Interval_50513 chr14 14481768 14482788 + 0 NA Intergenic Intergenic -33334 ENSMUSG00000114737.1 ENSMUSG00000114737 ENSMUST00000224271 Gm8483 processed_pseudogene Interval_155636 chr8 35430662 35430841 + 0 NA Intergenic Intergenic -8983 ENSMUSG00000110367.1 ENSMUSG00000110367 ENSMUST00000211662 Gm34853 lincRNA Interval_147355 chr7 66067015 66067184 + 0 NA intron (ENSMUSG00000030512.13, intron 3 of 7) protein_coding-intron (ENSMUSG00000030512.13, intron 3 of 7) 6496 ENSMUSG00000030512.13 ENSMUSG00000030512 ENSMUST00000147702 Snrpa1 protein_coding Interval_99597 chr2 163451378 163451806 + 0 NA exon (ENSMUSG00000017943.15, exon 5 of 6) protein_coding-exon (ENSMUSG00000017943.15, exon 5 of 6) 13059 ENSMUSG00000017943.15 ENSMUSG00000017943 ENSMUST00000137070 Gdap1l1 protein_coding Interval_57067 chr15 5343151 5343380 + 0 NA Intergenic Intergenic -27404 ENSMUSG00000114992.1 ENSMUSG00000114992 ENSMUST00000227164 Gm2150 processed_pseudogene Interval_91650 chr2 45420213 45421294 + 0 NA Intergenic Intergenic 63488 ENSMUSG00000085591.1 ENSMUSG00000085591 ENSMUST00000130773 Gm13479 lincRNA Interval_31000 chr11 97653284 97654022 + 0 NA intron (ENSMUSG00000085586.1, intron 1 of 3) processed_transcript-intron (ENSMUSG00000085586.1, intron 1 of 3) 6674 ENSMUSG00000093004.1 ENSMUSG00000093004 ENSMUST00000175263 Gm24158 miRNA Interval_68452 chr16 77023937 77024348 + 0 NA intron (ENSMUSG00000022867.11, intron 1 of 25) protein_coding-intron (ENSMUSG00000022867.11, intron 1 of 23) 10436 ENSMUSG00000022867.11 ENSMUSG00000022867 ENSMUST00000232351 Usp25 protein_coding Interval_63251 chr15 99934434 99934990 + 0 NA promoter-TSS (ENSMUSG00000096111.7) antisense-promoter-TSS (ENSMUSG00000096111.7) 2729 ENSMUSG00000077443.1 ENSMUSG00000077443 ENSMUST00000104255 Gm23133 snRNA Interval_141960 chr6 136040100 136040328 + 0 NA intron (ENSMUSG00000030209.14, intron 4 of 5) protein_coding-intron (ENSMUSG00000030209.14, intron 3 of 13) -132847 ENSMUSG00000097496.1 ENSMUSG00000097496 ENSMUST00000181537 Gm26653 antisense Interval_37276 chr12 64443777 64444501 + 0 NA Intergenic Intergenic 30551 ENSMUSG00000043060.8 ENSMUSG00000043060 ENSMUST00000059833 Fscb protein_coding Interval_42266 chr13 11331817 11332434 + 0 NA Intergenic Intergenic 94773 ENSMUSG00000077618.1 ENSMUSG00000077618 ENSMUST00000104430 Gm25496 snoRNA Interval_22814 chr11 16260824 16261532 + 0 NA intron (ENSMUSG00000048834.16, intron 1 of 3) protein_coding-intron (ENSMUSG00000048834.16, intron 2 of 4) 3115 ENSMUSG00000048834.16 ENSMUSG00000048834 ENSMUST00000207256 Vstm2a protein_coding Interval_108150 chr3 121999663 122000445 + 0 NA intron (ENSMUSG00000039831.16, intron 1 of 11) protein_coding-intron (ENSMUSG00000039831.16, intron 12 of 22) -2935 ENSMUSG00000039831.16 ENSMUSG00000039831 ENSMUST00000199550 Arhgap29 protein_coding Interval_113233 chr4 50998430 50998841 + 0 NA Intergenic Intergenic -191472 ENSMUSG00000084116.1 ENSMUSG00000084116 ENSMUST00000117147 Gm12460 processed_pseudogene Interval_82493 chr18 74520209 74520490 + 0 NA intron (ENSMUSG00000025885.18, intron 1 of 39) protein_coding-intron (ENSMUSG00000025885.18, intron 1 of 38) 10775 ENSMUSG00000086333.1 ENSMUSG00000086333 ENSMUST00000137034 1700120E14Rik antisense Interval_28848 chr11 78758240 78758916 + 0 NA Intergenic Intergenic -4056 ENSMUSG00000080600.2 ENSMUSG00000080600 ENSMUST00000116950 Gm23840 miRNA Interval_49633 chr13 113693514 113693822 + 0 NA Intergenic Intergenic 21350 ENSMUSG00000114417.1 ENSMUSG00000114417 ENSMUST00000223766 Gm34586 lincRNA Interval_104411 chr3 65411452 65412882 + 0 NA Intergenic Intergenic 18830 ENSMUSG00000048916.7 ENSMUSG00000048916 ENSMUST00000131852 Gm5540 processed_pseudogene Interval_140448 chr6 118196616 118198016 + 0 NA promoter-TSS (ENSMUSG00000030110.13) protein_coding-promoter-TSS (ENSMUSG00000030110.13) 402 ENSMUSG00000030110.13 ENSMUSG00000030110 ENSMUST00000088790 Ret protein_coding Interval_94989 chr2 102609035 102609521 + 0 NA intron (ENSMUSG00000027188.8, intron 3 of 6) protein_coding-intron (ENSMUSG00000027188.8, intron 3 of 10) 59129 ENSMUSG00000027188.8 ENSMUSG00000027188 ENSMUST00000143071 Pamr1 protein_coding Interval_68189 chr16 67404336 67404589 + 0 NA intron (ENSMUSG00000064115.13, intron 1 of 9) protein_coding-intron (ENSMUSG00000064115.13, intron 1 of 9) -166112 ENSMUSG00000116904.1 ENSMUSG00000116904 ENSMUST00000232322 Gm49640 processed_pseudogene Interval_162868 chr9 10761527 10761815 + 0 NA intron (ENSMUSG00000039488.15, intron 1 of 20) protein_coding-intron (ENSMUSG00000039488.15, intron 1 of 24) 27031 ENSMUSG00000111209.1 ENSMUSG00000111209 ENSMUST00000213753 Gm7529 processed_pseudogene Interval_48549 chr13 100071272 100071728 + 0 NA intron (ENSMUSG00000049658.13, intron 12 of 37) protein_coding-intron (ENSMUSG00000049658.13, intron 12 of 38) -5049 ENSMUSG00000049658.13 ENSMUSG00000049658 ENSMUST00000163097 Bdp1 protein_coding Interval_133013 chr5 149274957 149275325 + 0 NA intron (ENSMUSG00000060063.9, intron 2 of 4) protein_coding-intron (ENSMUSG00000060063.9, intron 2 of 4) 6082 ENSMUSG00000064704.1 ENSMUSG00000064704 ENSMUST00000082770 n-R5s180 rRNA Interval_155751 chr8 36752197 36752393 + 0 NA intron (ENSMUSG00000031523.16, intron 5 of 17) protein_coding-intron (ENSMUSG00000031523.16, intron 5 of 17) 200141 ENSMUSG00000031523.16 ENSMUSG00000031523 ENSMUST00000179501 Dlc1 protein_coding Interval_171753 chr9 120731974 120733724 + 0 NA Intergenic Intergenic 18294 ENSMUSG00000111831.1 ENSMUSG00000111831 ENSMUST00000215385 Gm47064 lincRNA Interval_140765 chr6 121136730 121137558 + 0 NA Intergenic Intergenic 20346 ENSMUSG00000108096.1 ENSMUSG00000108096 ENSMUST00000203344 Minpp1-ps processed_pseudogene Interval_132469 chr5 145146918 145147265 + 0 NA TTS (ENSMUSG00000029624.10) protein_coding-TTS (ENSMUSG00000029624.10) 6729 ENSMUSG00000038722.17 ENSMUSG00000038722 ENSMUST00000160840 Bud31 protein_coding Interval_71963 chr17 27250416 27250983 + 0 NA intron (ENSMUSG00000117794.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000117794.1, intron 1 of 1) -2633 ENSMUSG00000117916.1 ENSMUSG00000117916 ENSMUST00000236498 9630028I04Rik lincRNA Interval_11469 chr1 182063379 182064935 + 0 NA Intergenic Intergenic -7246 ENSMUSG00000103379.1 ENSMUSG00000103379 ENSMUST00000193768 Gm37177 processed_pseudogene Interval_162336 chr8 127246052 127246245 + 0 NA intron (ENSMUSG00000025812.18, intron 1 of 1) protein_coding-intron (ENSMUSG00000025812.18, intron 2 of 23) 74744 ENSMUSG00000025812.18 ENSMUSG00000025812 ENSMUST00000159940 Pard3 protein_coding Interval_63157 chr15 99436134 99436726 + 0 NA intron (ENSMUSG00000023009.14, intron 1 of 12) protein_coding-intron (ENSMUSG00000023009.14, intron 1 of 12) 8729 ENSMUSG00000089968.1 ENSMUSG00000089968 ENSMUST00000159738 Nckap5los antisense Interval_105891 chr3 89945089 89945396 + 0 NA TTS (ENSMUSG00000060671.12) protein_coding-TTS (ENSMUSG00000060671.12) 1230 ENSMUSG00000060671.12 ENSMUSG00000060671 ENSMUST00000171422 Atp8b2 protein_coding Interval_157831 chr8 74715917 74716510 + 0 NA intron (ENSMUSG00000079011.9, intron 5 of 9) lincRNA-intron (ENSMUSG00000079011.9, intron 5 of 9) 117724 ENSMUSG00000079011.9 ENSMUSG00000079011 ENSMUST00000137218 Gm11033 lincRNA Interval_157790 chr8 73232853 73233902 + 0 NA intron (ENSMUSG00000004383.18, intron 1 of 14) protein_coding-intron (ENSMUSG00000004383.18, intron 1 of 14) -58119 ENSMUSG00000089447.1 ENSMUSG00000089447 ENSMUST00000158822 Gm22532 snoRNA Interval_116290 chr4 109360258 109360467 + 0 NA intron (ENSMUSG00000028552.13, intron 13 of 24) protein_coding-intron (ENSMUSG00000028552.13, intron 1 of 12) -10186 ENSMUSG00000028552.13 ENSMUSG00000028552 ENSMUST00000177140 Eps15 protein_coding Interval_56439 chr14 118767754 118768601 + 0 NA Intergenic Intergenic -6975 ENSMUSG00000088105.1 ENSMUSG00000088105 ENSMUST00000157480 Gm22379 snoRNA Interval_42407 chr13 13328709 13329667 + 0 NA promoter-TSS (ENSMUSG00000084734.1) snoRNA-promoter-TSS (ENSMUSG00000084734.1) -296 ENSMUSG00000084734.1 ENSMUSG00000084734 ENSMUST00000122785 Gm25804 snoRNA Interval_113240 chr4 51654201 51655120 + 0 NA Intergenic Intergenic -1107 ENSMUSG00000088515.1 ENSMUSG00000088515 ENSMUST00000157890 Gm23043 snoRNA Interval_110759 chr4 8113374 8114083 + 0 NA Intergenic Intergenic -4892 ENSMUSG00000083068.1 ENSMUSG00000083068 ENSMUST00000120050 Gm11800 processed_pseudogene Interval_48386 chr13 98656092 98656294 + 0 NA Intergenic Intergenic -18783 ENSMUSG00000046082.4 ENSMUSG00000046082 ENSMUST00000050389 Tmem174 protein_coding Interval_118837 chr4 133956061 133957035 + 0 NA Intergenic Intergenic 11343 ENSMUSG00000003038.15 ENSMUSG00000003038 ENSMUST00000136859 Hmgn2 protein_coding Interval_152096 chr7 129256293 129257557 + 0 NA promoter-TSS (ENSMUSG00000070366.5) protein_coding-promoter-TSS (ENSMUSG00000070366.5) -122 ENSMUSG00000070366.5 ENSMUSG00000070366 ENSMUST00000205896 Plpp4 protein_coding Interval_149412 chr7 98267439 98268845 + 0 NA intron (ENSMUSG00000030760.14, intron 1 of 10) protein_coding-intron (ENSMUSG00000030760.14, intron 1 of 10) -41254 ENSMUSG00000030760.14 ENSMUSG00000030760 ENSMUST00000137899 Acer3 protein_coding Interval_30965 chr11 97468648 97469331 + 0 NA intron (ENSMUSG00000049807.16, intron 10 of 18) protein_coding-intron (ENSMUSG00000049807.16, intron 11 of 18) 31351 ENSMUSG00000047988.1 ENSMUSG00000047988 ENSMUST00000056955 4933428G20Rik protein_coding Interval_123721 chr5 34862901 34863182 + 0 NA intron (ENSMUSG00000029104.15, intron 37 of 66) protein_coding-intron (ENSMUSG00000029104.15, intron 37 of 66) -52047 ENSMUSG00000051246.3 ENSMUSG00000051246 ENSMUST00000202205 Msantd1 protein_coding Interval_119586 chr4 138515400 138515625 + 0 NA Intergenic Intergenic 61198 ENSMUSG00000046447.3 ENSMUSG00000046447 ENSMUST00000050918 Camk2n1 protein_coding Interval_62546 chr15 94557321 94557948 + 0 NA TTS (ENSMUSG00000059883.16) protein_coding-TTS (ENSMUSG00000059883.16) 13981 ENSMUSG00000059883.16 ENSMUSG00000059883 ENSMUST00000109248 Irak4 protein_coding Interval_85385 chr19 25387849 25388193 + 0 NA intron (ENSMUSG00000032702.16, intron 4 of 13) protein_coding-intron (ENSMUSG00000032702.16, intron 4 of 13) -34218 ENSMUSG00000032702.16 ENSMUSG00000032702 ENSMUST00000155788 Kank1 protein_coding Interval_39588 chr12 91212894 91213116 + 0 NA TTS (ENSMUSG00000061533.16) protein_coding-TTS (ENSMUSG00000061533.16) 53144 ENSMUSG00000113983.1 ENSMUSG00000113983 ENSMUST00000220984 Gm47742 processed_pseudogene Interval_64112 chr16 8480479 8480881 + 0 NA promoter-TSS (ENSMUSG00000077557.1) snoRNA-promoter-TSS (ENSMUSG00000077557.1) 61 ENSMUSG00000077557.1 ENSMUSG00000077557 ENSMUST00000104369 Gm23706 snoRNA Interval_107814 chr3 115694959 115695899 + 0 NA Intergenic Intergenic 19643 ENSMUSG00000045092.8 ENSMUSG00000045092 ENSMUST00000055676 S1pr1 protein_coding Interval_7261 chr1 128297493 128297739 + 0 NA intron (ENSMUSG00000026354.8, intron 9 of 16) protein_coding-intron (ENSMUSG00000026354.8, intron 9 of 16) -5352 ENSMUSG00000026354.8 ENSMUSG00000026354 ENSMUST00000162067 Lct protein_coding Interval_25516 chr11 49437553 49437868 + 0 NA intron (ENSMUSG00000047702.2, intron 1 of 3) protein_coding-intron (ENSMUSG00000047702.2, intron 1 of 3) 1086 ENSMUSG00000047702.2 ENSMUSG00000047702 ENSMUST00000055584 Olfr1388 protein_coding Interval_74158 chr17 46840176 46841125 + 0 NA intron (ENSMUSG00000036568.7, intron 1 of 4) protein_coding-intron (ENSMUSG00000036568.7, intron 1 of 4) -8336 ENSMUSG00000036568.7 ENSMUSG00000036568 ENSMUST00000233455 Bicral protein_coding Interval_92887 chr2 68190997 68191298 + 0 NA Intergenic Intergenic 109356 ENSMUSG00000081257.1 ENSMUSG00000081257 ENSMUST00000117875 Gm13607 processed_pseudogene Interval_67613 chr16 52595364 52595574 + 0 NA Intergenic Intergenic -14061 ENSMUSG00000116880.1 ENSMUSG00000116880 ENSMUST00000232449 Gm49634 processed_pseudogene Interval_155789 chr8 37853482 37853737 + 0 NA intron (ENSMUSG00000039539.13, intron 2 of 9) protein_coding-intron (ENSMUSG00000039539.13, intron 2 of 7) -64917 ENSMUSG00000081316.1 ENSMUSG00000081316 ENSMUST00000117720 Gm16205 processed_pseudogene Interval_11014 chr1 178375864 178376649 + 0 NA Intergenic Intergenic -12735 ENSMUSG00000099303.1 ENSMUSG00000099303 ENSMUST00000185108 Gm27458 miRNA Interval_118863 chr4 134128314 134129523 + 0 NA promoter-TSS (ENSMUSG00000028843.8) protein_coding-promoter-TSS (ENSMUSG00000028843.8) -181 ENSMUSG00000028843.8 ENSMUSG00000028843 ENSMUST00000136408 Sh3bgrl3 protein_coding Interval_54297 chr14 67248699 67250838 + 0 NA intron (ENSMUSG00000022053.13, intron 7 of 16) protein_coding-intron (ENSMUSG00000022053.13, intron 7 of 16) 16165 ENSMUSG00000022053.13 ENSMUSG00000022053 ENSMUST00000176029 Ebf2 protein_coding Interval_62865 chr15 97498502 97498744 + 0 NA Intergenic Intergenic 59667 ENSMUSG00000116131.1 ENSMUSG00000116131 ENSMUST00000230522 Gm49506 processed_pseudogene Interval_10785 chr1 174678444 174679227 + 0 NA intron (ENSMUSG00000028354.13, intron 3 of 7) protein_coding-intron (ENSMUSG00000028354.13, intron 8 of 17) 69026 ENSMUSG00000028354.13 ENSMUSG00000028354 ENSMUST00000193905 Fmn2 protein_coding Interval_29080 chr11 80195929 80196388 + 0 NA intron (ENSMUSG00000020707.6, intron 3 of 4) protein_coding-intron (ENSMUSG00000020707.6, intron 3 of 4) 11935 ENSMUSG00000020707.6 ENSMUSG00000020707 ENSMUST00000134909 Rnf135 protein_coding Interval_174464 chrX 152781422 152782531 + 0 NA promoter-TSS (ENSMUSG00000025333.10) protein_coding-promoter-TSS (ENSMUSG00000025333.10) 55 ENSMUSG00000025333.10 ENSMUSG00000025333 ENSMUST00000139310 Gpr143 protein_coding Interval_126170 chr5 81268920 81269384 + 0 NA intron (ENSMUSG00000037605.16, intron 3 of 10) protein_coding-intron (ENSMUSG00000037605.16, intron 3 of 26) 19903 ENSMUSG00000107226.1 ENSMUSG00000107226 ENSMUST00000201153 Gm43594 TEC Interval_13614 chr10 20195240 20195458 + 0 NA intron (ENSMUSG00000019996.17, intron 1 of 5) protein_coding-intron (ENSMUSG00000019996.17, intron 1 of 17) 6489 ENSMUSG00000110754.1 ENSMUSG00000110754 ENSMUST00000214323 4930405J17Rik antisense Interval_156197 chr8 45884914 45886127 + 0 NA promoter-TSS (ENSMUSG00000031636.7) protein_coding-promoter-TSS (ENSMUSG00000031636.7) 33 ENSMUSG00000031636.7 ENSMUSG00000031636 ENSMUST00000209216 Pdlim3 protein_coding Interval_129221 chr5 118277864 118278914 + 0 NA Intergenic Intergenic 11940 ENSMUSG00000095477.1 ENSMUSG00000095477 ENSMUST00000104098 Gm25076 snoRNA Interval_86717 chr19 42936600 42937582 + 0 NA intron (ENSMUSG00000074852.4, intron 6 of 8) protein_coding-intron (ENSMUSG00000074852.4, intron 6 of 11) 157981 ENSMUSG00000090235.1 ENSMUSG00000090235 ENSMUST00000160001 Gm16244 processed_transcript Interval_167598 chr9 70926450 70926663 + 0 NA intron (ENSMUSG00000032207.10, intron 1 of 8) protein_coding-intron (ENSMUSG00000032207.10, intron 1 of 8) -3932 ENSMUSG00000111631.1 ENSMUSG00000111631 ENSMUST00000215190 Gm32017 processed_transcript Interval_46755 chr13 69987375 69987652 + 0 NA Intergenic Intergenic 20101 ENSMUSG00000113980.1 ENSMUSG00000113980 ENSMUST00000221449 Gm47655 processed_pseudogene Interval_13457 chr10 18411488 18411928 + 0 NA intron (ENSMUSG00000039835.16, intron 1 of 3) protein_coding-intron (ENSMUSG00000039835.16, intron 1 of 6) -74467 ENSMUSG00000111313.1 ENSMUSG00000111313 ENSMUST00000213578 Gm18942 processed_pseudogene Interval_173242 chrX 75112512 75112731 + 0 NA TTS (ENSMUSG00000031402.12) protein_coding-TTS (ENSMUSG00000031402.12) 11212 ENSMUSG00000089014.1 ENSMUSG00000089014 ENSMUST00000158389 Gm25520 snoRNA Interval_34053 chr11 120215766 120215976 + 0 NA intron (ENSMUSG00000086750.1, intron 1 of 1) antisense-intron (ENSMUSG00000086750.1, intron 1 of 1) 1122 ENSMUSG00000086750.1 ENSMUSG00000086750 ENSMUST00000135048 Gm11770 antisense Interval_60503 chr15 74493027 74493448 + 0 NA Intergenic Intergenic -52793 ENSMUSG00000118581.1 ENSMUSG00000118581 ENSMUST00000239328 AC119183.1 unitary_pseudogene Interval_121357 chr4 155221646 155223815 + 0 NA promoter-TSS (ENSMUSG00000029050.15) protein_coding-promoter-TSS (ENSMUSG00000029050.15) -27236 ENSMUSG00000073684.13 ENSMUSG00000073684 ENSMUST00000156404 Faap20 protein_coding Interval_5235 chr1 86622702 86623092 + 0 NA Intergenic Intergenic 14711 ENSMUSG00000084468.1 ENSMUSG00000084468 ENSMUST00000122519 Gm22955 miRNA Interval_1246 chr1 18077576 18079538 + 0 NA Intergenic Intergenic -20288 ENSMUSG00000101717.2 ENSMUSG00000101717 ENSMUST00000188360 Gm45784 transcribed_unprocessed_pseudogene Interval_85951 chr19 34064494 34064772 + 0 NA Intergenic Intergenic -2896 ENSMUSG00000024770.14 ENSMUSG00000024770 ENSMUST00000148821 Lipn protein_coding Interval_74925 chr17 57344970 57345177 + 0 NA Intergenic Intergenic -13626 ENSMUSG00000004730.15 ENSMUSG00000004730 ENSMUST00000004850 Adgre1 protein_coding Interval_149071 chr7 92867467 92868274 + 0 NA intron (ENSMUSG00000030641.10, intron 3 of 3) protein_coding-intron (ENSMUSG00000030641.10, intron 2 of 5) 6362 ENSMUSG00000030641.10 ENSMUSG00000030641 ENSMUST00000207931 Ddias protein_coding Interval_12702 chr10 4386351 4388308 + 0 NA intron (ENSMUSG00000075327.10, intron 1 of 2) protein_coding-intron (ENSMUSG00000075327.10, intron 1 of 2) -4258 ENSMUSG00000095123.1 ENSMUSG00000095123 ENSMUST00000178920 Gm21781 lincRNA Interval_47156 chr13 76646418 76646772 + 0 NA intron (ENSMUSG00000021596.16, intron 2 of 7) protein_coding-intron (ENSMUSG00000021596.16, intron 2 of 20) 37838 ENSMUSG00000096216.2 ENSMUSG00000096216 ENSMUST00000178439 Gm21959 processed_pseudogene Interval_85496 chr19 27510922 27511601 + 0 NA Intergenic Intergenic -1247 ENSMUSG00000118072.1 ENSMUSG00000118072 ENSMUST00000235994 Gm50101 processed_pseudogene Interval_154912 chr8 25009756 25010132 + 0 NA intron (ENSMUSG00000031555.15, intron 1 of 21) protein_coding-intron (ENSMUSG00000031555.15, intron 1 of 22) -7315 ENSMUSG00000031556.6 ENSMUSG00000031556 ENSMUST00000210536 Tm2d2 protein_coding Interval_122648 chr5 24444563 24445714 + 0 NA promoter-TSS (ENSMUSG00000028959.14) protein_coding-promoter-TSS (ENSMUSG00000028959.14) 1814 ENSMUSG00000028958.15 ENSMUSG00000028958 ENSMUST00000123167 Tmub1 protein_coding Interval_11986 chr1 188342554 188342991 + 0 NA intron (ENSMUSG00000026609.15, intron 3 of 4) protein_coding-intron (ENSMUSG00000026609.15, intron 3 of 70) 80749 ENSMUSG00000026609.15 ENSMUSG00000026609 ENSMUST00000127077 Ush2a protein_coding Interval_148622 chr7 83475648 83476345 + 0 NA intron (ENSMUSG00000109042.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000109042.1, intron 1 of 2) 4288 ENSMUSG00000109042.1 ENSMUSG00000109042 ENSMUST00000208669 Gm44991 lincRNA Interval_146525 chr7 46618469 46619512 + 0 NA intron (ENSMUSG00000030839.12, intron 6 of 11) protein_coding-intron (ENSMUSG00000030839.12, intron 6 of 10) 20814 ENSMUSG00000030839.12 ENSMUSG00000030839 ENSMUST00000137988 Sergef protein_coding Interval_5558 chr1 89797912 89798625 + 0 NA intron (ENSMUSG00000055013.16, intron 12 of 16) protein_coding-intron (ENSMUSG00000055013.16, intron 13 of 17) 9105 ENSMUSG00000055013.16 ENSMUSG00000055013 ENSMUST00000212924 Agap1 protein_coding Interval_75799 chr17 71469783 71470366 + 0 NA intron (ENSMUSG00000024054.14, intron 1 of 47) protein_coding-intron (ENSMUSG00000024054.14, intron 1 of 47) -4428 ENSMUSG00000024054.14 ENSMUSG00000024054 ENSMUST00000182747 Smchd1 protein_coding Interval_7479 chr1 131718841 131719771 + 0 NA Intergenic Intergenic -24732 ENSMUSG00000042268.10 ENSMUSG00000042268 ENSMUST00000147800 Slc26a9 protein_coding Interval_174555 chrX 157612648 157613544 + 0 NA promoter-TSS (ENSMUSG00000081222.1) processed_pseudogene-promoter-TSS (ENSMUSG00000081222.1) 25 ENSMUSG00000081222.1 ENSMUSG00000081222 ENSMUST00000122049 Gm15173 processed_pseudogene Interval_142963 chr6 147420093 147420693 + 0 NA Intergenic Intergenic 51937 ENSMUSG00000072660.5 ENSMUSG00000072660 ENSMUST00000128634 Gm6288 antisense Interval_145669 chr7 37168992 37169656 + 0 NA Intergenic Intergenic 28783 ENSMUSG00000100905.1 ENSMUSG00000100905 ENSMUST00000189179 Gm28075 lincRNA Interval_85948 chr19 33958637 33958879 + 0 NA Intergenic Intergenic -2429 ENSMUSG00000024768.5 ENSMUSG00000024768 ENSMUST00000025680 Lipf protein_coding Interval_4931 chr1 82759495 82759996 + 0 NA intron (ENSMUSG00000026149.2, intron 2 of 2) protein_coding-intron (ENSMUSG00000026149.2, intron 3 of 3) 8716 ENSMUSG00000026149.2 ENSMUSG00000026149 ENSMUST00000138787 Tm4sf20 protein_coding Interval_43789 chr13 36447808 36448099 + 0 NA intron (ENSMUSG00000021420.13, intron 6 of 7) protein_coding-intron (ENSMUSG00000021420.13, intron 6 of 6) 11327 ENSMUSG00000114714.1 ENSMUSG00000114714 ENSMUST00000224213 Gm48763 TEC Interval_35414 chr12 21440933 21442181 + 0 NA Intergenic Intergenic 23678 ENSMUSG00000097055.2 ENSMUSG00000097055 ENSMUST00000227598 Gm4419 antisense Interval_118156 chr4 129271790 129272978 + 0 NA Intergenic Intergenic 10419 ENSMUSG00000087575.7 ENSMUSG00000087575 ENSMUST00000150171 Gm12976 lincRNA Interval_125038 chr5 64012890 64013653 + 0 NA Intergenic Intergenic -10787 ENSMUSG00000077209.1 ENSMUSG00000077209 ENSMUST00000104021 Gm25608 snoRNA Interval_62827 chr15 97272602 97273323 + 0 NA intron (ENSMUSG00000044250.8, intron 1 of 1) protein_coding-intron (ENSMUSG00000044250.8, intron 1 of 5) -25840 ENSMUSG00000048218.6 ENSMUSG00000048218 ENSMUST00000053106 Amigo2 protein_coding Interval_36376 chr12 42711861 42712074 + 0 NA Intergenic Intergenic 303492 ENSMUSG00000112407.1 ENSMUSG00000112407 ENSMUST00000219475 Gm33340 lincRNA Interval_62696 chr15 96332676 96333938 + 0 NA intron (ENSMUSG00000033237.19, intron 3 of 4) protein_coding-intron (ENSMUSG00000033237.19, intron 3 of 20) -45507 ENSMUSG00000033237.19 ENSMUSG00000033237 ENSMUST00000176739 Arid2 protein_coding Interval_32504 chr11 107982458 107983974 + 0 NA intron (ENSMUSG00000050965.14, intron 3 of 5) protein_coding-intron (ENSMUSG00000050965.14, intron 10 of 16) -10806 ENSMUSG00000086078.1 ENSMUSG00000086078 ENSMUST00000137175 Gm11657 antisense Interval_171109 chr9 114578338 114580129 + 0 NA Intergenic Intergenic -14864 ENSMUSG00000079259.2 ENSMUSG00000079259 ENSMUST00000111816 Trim71 protein_coding Interval_158636 chr8 84902645 84903953 + 0 NA exon (ENSMUSG00000054191.9, exon 2 of 3) protein_coding-exon (ENSMUSG00000054191.9, exon 2 of 3) 1371 ENSMUSG00000054191.9 ENSMUSG00000054191 ENSMUST00000239392 Klf1 protein_coding Interval_41779 chr12 119042191 119042531 + 0 NA Intergenic Intergenic 25069 ENSMUSG00000114030.1 ENSMUSG00000114030 ENSMUST00000221798 Gm18921 processed_pseudogene Interval_83776 chr19 4624966 4626369 + 0 NA promoter-TSS (ENSMUSG00000024889.5) protein_coding-promoter-TSS (ENSMUSG00000024889.5) -297 ENSMUSG00000024889.5 ENSMUSG00000024889 ENSMUST00000225509 Rce1 protein_coding Interval_126916 chr5 97097508 97098169 + 0 NA promoter-TSS (ENSMUSG00000055725.11) protein_coding-promoter-TSS (ENSMUSG00000055725.11) 13605 ENSMUSG00000055725.11 ENSMUSG00000055725 ENSMUST00000132127 Paqr3 protein_coding Interval_72950 chr17 33759740 33760740 + 0 NA promoter-TSS (ENSMUSG00000077450.13) protein_coding-promoter-TSS (ENSMUSG00000077450.13) -177 ENSMUSG00000077450.13 ENSMUSG00000077450 ENSMUST00000174744 Rab11b protein_coding Interval_28887 chr11 79061783 79062440 + 0 NA intron (ENSMUSG00000018334.18, intron 1 of 10) protein_coding-intron (ENSMUSG00000018334.18, intron 2 of 18) -2275 ENSMUSG00000018334.18 ENSMUSG00000018334 ENSMUST00000129463 Ksr1 protein_coding Interval_86769 chr19 43734076 43734902 + 0 NA TTS (ENSMUSG00000025192.13) protein_coding-TTS (ENSMUSG00000025192.13) 5613 ENSMUSG00000040018.9 ENSMUSG00000040018 ENSMUST00000129242 Cox15 protein_coding Interval_25013 chr11 43077769 43078288 + 0 NA Intergenic Intergenic 38266 ENSMUSG00000085951.1 ENSMUSG00000085951 ENSMUST00000142108 Gm12145 lincRNA Interval_102150 chr3 18695341 18695833 + 0 NA Intergenic Intergenic -57490 ENSMUSG00000103264.1 ENSMUSG00000103264 ENSMUST00000194363 Gm30341 processed_pseudogene Interval_101246 chr2 179817647 179817970 + 0 NA intron (ENSMUSG00000000305.12, intron 4 of 5) protein_coding-intron (ENSMUSG00000000305.12, intron 4 of 15) 40645 ENSMUSG00000000305.12 ENSMUSG00000000305 ENSMUST00000098996 Cdh4 protein_coding Interval_120558 chr4 149365507 149366143 + 0 NA TTS (ENSMUSG00000085819.7) antisense-TTS (ENSMUSG00000085819.7) 17940 ENSMUSG00000085819.7 ENSMUSG00000085819 ENSMUST00000141259 Ube4bos1 antisense Interval_95333 chr2 106707081 106707525 + 0 NA intron (ENSMUSG00000016386.15, intron 2 of 2) protein_coding-intron (ENSMUSG00000016386.15, intron 2 of 6) 12083 ENSMUSG00000016386.15 ENSMUSG00000016386 ENSMUST00000133401 Mpped2 protein_coding Interval_20753 chr10 120748246 120748580 + 0 NA promoter-TSS (ENSMUSG00000112757.1) TEC-promoter-TSS (ENSMUSG00000112757.1) -80 ENSMUSG00000112757.1 ENSMUSG00000112757 ENSMUST00000219611 Gm10743 TEC Interval_34086 chr11 120431301 120431533 + 0 NA intron (ENSMUSG00000039703.15, intron 2 of 15) protein_coding-intron (ENSMUSG00000039703.15, intron 2 of 16) -11254 ENSMUSG00000039691.10 ENSMUSG00000039691 ENSMUST00000143192 Tspan10 protein_coding Interval_162142 chr8 125478765 125480304 + 0 NA intron (ENSMUSG00000001995.9, intron 5 of 22) protein_coding-intron (ENSMUSG00000001995.9, intron 3 of 20) 90274 ENSMUSG00000001995.9 ENSMUSG00000001995 ENSMUST00000212604 Sipa1l2 protein_coding Interval_103233 chr3 37257430 37257680 + 0 NA promoter-TSS (ENSMUSG00000094007.1) miRNA-promoter-TSS (ENSMUSG00000094007.1) -662 ENSMUSG00000094007.1 ENSMUSG00000094007 ENSMUST00000180244 Gm24169 miRNA Interval_32158 chr11 105794375 105795248 + 0 NA intron (ENSMUSG00000053580.16, intron 6 of 25) protein_coding-intron (ENSMUSG00000053580.16, intron 6 of 25) 21293 ENSMUSG00000083465.1 ENSMUSG00000083465 ENSMUST00000117842 Gm11652 processed_pseudogene Interval_126388 chr5 87809210 87809914 + 0 NA intron (ENSMUSG00000061388.11, intron 1 of 10) protein_coding-intron (ENSMUSG00000061388.11, intron 1 of 11) -1785 ENSMUSG00000061388.11 ENSMUSG00000061388 ENSMUST00000200098 Csn1s2b protein_coding Interval_147750 chr7 73343378 73344077 + 0 NA intron (ENSMUSG00000097756.2, intron 1 of 2) antisense-intron (ENSMUSG00000097756.2, intron 1 of 1) 32047 ENSMUSG00000097756.2 ENSMUSG00000097756 ENSMUST00000206959 A730056A06Rik antisense Interval_173216 chrX 74281303 74283194 + 0 NA promoter-TSS (ENSMUSG00000019088.14) protein_coding-promoter-TSS (ENSMUSG00000019088.14) -512 ENSMUSG00000019088.14 ENSMUSG00000019088 ENSMUST00000148882 Dnase1l1 protein_coding Interval_108495 chr3 127694922 127695916 + 0 NA intron (ENSMUSG00000028028.11, intron 3 of 12) protein_coding-intron (ENSMUSG00000028028.11, intron 4 of 13) -2899 ENSMUSG00000089988.2 ENSMUSG00000089988 ENSMUST00000159343 Gm16238 processed_pseudogene Interval_165101 chr9 44581397 44581661 + 0 NA exon (ENSMUSG00000111378.1, exon 1 of 1) lincRNA-exon (ENSMUSG00000111378.1, exon 1 of 1) 1902 ENSMUSG00000111378.1 ENSMUSG00000111378 ENSMUST00000215946 Gm47230 lincRNA Interval_142916 chr6 146925918 146927189 + 0 NA intron (ENSMUSG00000016487.15, intron 2 of 4) protein_coding-intron (ENSMUSG00000016487.15, intron 1 of 26) 27861 ENSMUSG00000040163.14 ENSMUSG00000040163 ENSMUST00000111622 1700034J05Rik protein_coding Interval_84963 chr19 20421656 20422094 + 0 NA promoter-TSS (ENSMUSG00000094732.2) lincRNA-promoter-TSS (ENSMUSG00000094732.2) 2907 ENSMUSG00000114469.2 ENSMUSG00000114469 ENSMUST00000225910 C730002L08Rik processed_transcript Interval_127291 chr5 102147584 102148602 + 0 NA Intergenic Intergenic -11433 ENSMUSG00000105088.1 ENSMUSG00000105088 ENSMUST00000195986 Gm17978 processed_pseudogene Interval_76280 chr17 78697697 78697891 + 0 NA intron (ENSMUSG00000024077.15, intron 2 of 17) protein_coding-intron (ENSMUSG00000024077.15, intron 2 of 17) 39402 ENSMUSG00000024077.15 ENSMUSG00000024077 ENSMUST00000145480 Strn protein_coding Interval_160402 chr8 108972152 108972376 + 0 NA Intergenic Intergenic 35404 ENSMUSG00000093241.1 ENSMUSG00000093241 ENSMUST00000175500 Mir3108 miRNA Interval_51978 chr14 34398514 34399333 + 0 NA TTS (ENSMUSG00000041445.9) protein_coding-TTS (ENSMUSG00000041445.9) 23202 ENSMUSG00000041445.9 ENSMUSG00000041445 ENSMUST00000227130 Mmrn2 protein_coding Interval_91140 chr2 35405754 35406017 + 0 NA intron (ENSMUSG00000035778.17, intron 5 of 5) protein_coding-intron (ENSMUSG00000035778.17, intron 6 of 6) -8710 ENSMUSG00000079421.8 ENSMUSG00000079421 ENSMUST00000113009 4930402F06Rik protein_coding Interval_95523 chr2 111297525 111297722 + 0 NA exon (ENSMUSG00000068647.2, exon 4 of 4) protein_coding-exon (ENSMUSG00000068647.2, exon 4 of 4) -3012 ENSMUSG00000109813.2 ENSMUSG00000109813 ENSMUST00000090329 Olfr1279 protein_coding Interval_150023 chr7 105038119 105038464 + 0 NA TTS (ENSMUSG00000073915.5) protein_coding-TTS (ENSMUSG00000073915.5) 5593 ENSMUSG00000073915.5 ENSMUSG00000073915 ENSMUST00000098162 Olfr676 protein_coding Interval_20517 chr10 118171578 118172685 + 0 NA Intergenic Intergenic -6969 ENSMUSG00000112684.1 ENSMUSG00000112684 ENSMUST00000219046 Gm47958 antisense Interval_97019 chr2 130576117 130576899 + 0 NA intron (ENSMUSG00000027301.7, intron 1 of 2) protein_coding-intron (ENSMUSG00000027301.7, intron 1 of 2) 335 ENSMUSG00000027301.7 ENSMUSG00000027301 ENSMUST00000028764 Oxt protein_coding Interval_15809 chr10 57463446 57464045 + 0 NA Intergenic Intergenic 22606 ENSMUSG00000097370.2 ENSMUSG00000097370 ENSMUST00000180831 4930467K11Rik lincRNA Interval_133967 chr6 16980521 16981204 + 0 NA Intergenic Intergenic 55631 ENSMUSG00000081744.1 ENSMUSG00000081744 ENSMUST00000119845 Gm5721 processed_pseudogene Interval_50451 chr14 13469392 13469657 + 0 NA intron (ENSMUSG00000056296.17, intron 1 of 3) protein_coding-intron (ENSMUSG00000056296.17, intron 2 of 5) -115444 ENSMUSG00000081115.2 ENSMUSG00000081115 ENSMUST00000118492 Gm15913 processed_pseudogene Interval_164744 chr9 40994481 40994699 + 0 NA intron (ENSMUSG00000032021.14, intron 1 of 9) protein_coding-intron (ENSMUSG00000032021.14, intron 1 of 9) 9996 ENSMUSG00000032021.14 ENSMUSG00000032021 ENSMUST00000034519 Crtam protein_coding Interval_99648 chr2 163918313 163919576 + 0 NA promoter-TSS (ENSMUSG00000035226.5) protein_coding-promoter-TSS (ENSMUSG00000035226.5) -261 ENSMUSG00000035226.5 ENSMUSG00000035226 ENSMUST00000044734 Rims4 protein_coding Interval_25345 chr11 46549549 46550573 + 0 NA intron (ENSMUSG00000086981.2, intron 2 of 3) lincRNA-intron (ENSMUSG00000086981.2, intron 2 of 3) 1648 ENSMUSG00000086981.2 ENSMUSG00000086981 ENSMUST00000169764 Gm12171 lincRNA Interval_57297 chr15 8589239 8590265 + 0 NA Intergenic Intergenic -60161 ENSMUSG00000115577.1 ENSMUSG00000115577 ENSMUST00000228699 Gm49250 processed_pseudogene Interval_77632 chr17 93385199 93385408 + 0 NA Intergenic Intergenic 6395 ENSMUSG00000117368.1 ENSMUSG00000117368 ENSMUST00000234726 Gm50001 processed_pseudogene Interval_15733 chr10 55308260 55308472 + 0 NA Intergenic Intergenic 184004 ENSMUSG00000112755.1 ENSMUSG00000112755 ENSMUST00000219650 Gm46190 processed_pseudogene Interval_87482 chr19 52887501 52887727 + 0 NA Intergenic Intergenic -35628 ENSMUSG00000117896.1 ENSMUSG00000117896 ENSMUST00000237126 AA387883 lincRNA Interval_80928 chr18 50341008 50341493 + 0 NA Intergenic Intergenic 62881 ENSMUSG00000035420.7 ENSMUSG00000035420 ENSMUST00000238078 Fam170a protein_coding Interval_77714 chr17 94607891 94608656 + 0 NA promoter-TSS (ENSMUSG00000117476.1) processed_pseudogene-promoter-TSS (ENSMUSG00000117476.1) 88 ENSMUSG00000117476.1 ENSMUSG00000117476 ENSMUST00000234959 Gm9416 processed_pseudogene Interval_56395 chr14 118425877 118426800 + 0 NA Intergenic Intergenic -50144 ENSMUSG00000115515.1 ENSMUSG00000115515 ENSMUST00000226188 Gm5672 processed_pseudogene Interval_137229 chr6 70489115 70490292 + 0 NA Intergenic Intergenic 3960 ENSMUSG00000106315.1 ENSMUSG00000106315 ENSMUST00000196813 Gm42720 IG_V_pseudogene Interval_87182 chr19 46689624 46690687 + 0 NA intron (ENSMUSG00000062376.7, intron 1 of 4) protein_coding-intron (ENSMUSG00000062376.7, intron 1 of 4) 249 ENSMUSG00000062376.7 ENSMUSG00000062376 ENSMUST00000074912 Borcs7 protein_coding Interval_161087 chr8 117377414 117377693 + 0 NA intron (ENSMUSG00000034390.16, intron 2 of 10) protein_coding-intron (ENSMUSG00000034390.16, intron 2 of 20) -45863 ENSMUSG00000034390.16 ENSMUSG00000034390 ENSMUST00000212884 Cmip protein_coding Interval_138124 chr6 85339191 85339691 + 0 NA intron (ENSMUSG00000051343.11, intron 3 of 4) protein_coding-intron (ENSMUSG00000051343.11, intron 3 of 4) 2196 ENSMUSG00000051343.11 ENSMUSG00000051343 ENSMUST00000204504 Rab11fip5 protein_coding Interval_147662 chr7 70968328 70968858 + 0 NA intron (ENSMUSG00000109532.1, intron 4 of 6) lincRNA-intron (ENSMUSG00000109532.1, intron 2 of 2) -55773 ENSMUSG00000109454.1 ENSMUSG00000109454 ENSMUST00000209159 Gm34783 processed_pseudogene Interval_54476 chr14 70116536 70117414 + 0 NA intron (ENSMUSG00000022089.9, intron 2 of 5) protein_coding-intron (ENSMUSG00000022089.9, intron 1 of 8) 16837 ENSMUSG00000022089.9 ENSMUSG00000022089 ENSMUST00000228049 Bin3 protein_coding Interval_166147 chr9 57052523 57053280 + 0 NA intron (ENSMUSG00000032290.7, intron 9 of 12) protein_coding-intron (ENSMUSG00000032290.7, intron 9 of 12) 19065 ENSMUSG00000074284.6 ENSMUSG00000074284 ENSMUST00000135527 Gm10658 antisense Interval_34900 chr12 13159219 13160171 + 0 NA Intergenic Intergenic 4068 ENSMUSG00000064717.1 ENSMUSG00000064717 ENSMUST00000082783 Gm24208 snoRNA Interval_174262 chrX 142437512 142438490 + 0 NA Intergenic Intergenic 12674 ENSMUSG00000081365.1 ENSMUSG00000081365 ENSMUST00000121341 Gm15031 processed_pseudogene Interval_167873 chr9 73192130 73193544 + 0 NA intron (ENSMUSG00000098875.1, intron 1 of 3) lincRNA-intron (ENSMUSG00000098875.1, intron 1 of 3) 354 ENSMUSG00000098875.1 ENSMUSG00000098875 ENSMUST00000183507 Gm27211 lincRNA Interval_40656 chr12 106509617 106509937 + 0 NA exon (ENSMUSG00000091442.1, exon 1 of 1) processed_pseudogene-exon (ENSMUSG00000091442.1, exon 1 of 1) 1535 ENSMUSG00000091442.1 ENSMUSG00000091442 ENSMUST00000016698 Gm17031 processed_pseudogene Interval_1511 chr1 24452587 24453441 + 0 NA promoter-TSS (ENSMUSG00000026141.13) protein_coding-promoter-TSS (ENSMUSG00000026141.13) -269 ENSMUSG00000026141.13 ENSMUSG00000026141 ENSMUST00000051344 Col19a1 protein_coding Interval_12788 chr10 5410606 5410855 + 0 NA intron (ENSMUSG00000096054.3, intron 10 of 145) protein_coding-intron (ENSMUSG00000096054.3, intron 10 of 31) 53557 ENSMUSG00000094906.1 ENSMUSG00000094906 ENSMUST00000104408 Gm23573 snRNA Interval_47707 chr13 91533306 91533873 + 0 NA intron (ENSMUSG00000003992.15, intron 2 of 10) protein_coding-intron (ENSMUSG00000003992.15, intron 2 of 16) 72419 ENSMUSG00000003992.15 ENSMUSG00000003992 ENSMUST00000137658 Ssbp2 protein_coding Interval_136666 chr6 57374379 57375068 + 0 NA Intergenic Intergenic -10996 ENSMUSG00000115644.1 ENSMUSG00000115644 ENSMUST00000227966 Vmn1r17 protein_coding Interval_67262 chr16 45062153 45062531 + 0 NA Intergenic Intergenic -31248 ENSMUSG00000022665.15 ENSMUSG00000022665 ENSMUST00000061050 Ccdc80 protein_coding Interval_153375 chr7 144175217 144176030 + 0 NA promoter-TSS (ENSMUSG00000037541.22) protein_coding-promoter-TSS (ENSMUSG00000037541.22) -63102 ENSMUSG00000037541.22 ENSMUSG00000037541 ENSMUST00000136979 Shank2 protein_coding Interval_136216 chr6 52104407 52107542 + 0 NA intron (ENSMUSG00000085412.7, intron 1 of 2) lincRNA-intron (ENSMUSG00000085412.7, intron 1 of 2) 2980 ENSMUSG00000085412.7 ENSMUSG00000085412 ENSMUST00000155758 Halr1 lincRNA Interval_141143 chr6 125230886 125232423 + 0 NA TTS (ENSMUSG00000030336.14) protein_coding-TTS (ENSMUSG00000030336.14) 206 ENSMUSG00000038213.7 ENSMUSG00000038213 ENSMUST00000043422 Tapbpl protein_coding Interval_44414 chr13 44715458 44716755 + 0 NA Intergenic Intergenic -15264 ENSMUSG00000038518.15 ENSMUSG00000038518 ENSMUST00000173003 Jarid2 protein_coding Interval_132074 chr5 142628907 142630411 + 0 NA promoter-TSS (ENSMUSG00000029578.15) protein_coding-promoter-TSS (ENSMUSG00000029578.15) 1961 ENSMUSG00000029578.15 ENSMUSG00000029578 ENSMUST00000143980 Wipi2 protein_coding Interval_99181 chr2 157840426 157842150 + 0 NA intron (ENSMUSG00000027649.15, intron 11 of 15) protein_coding-intron (ENSMUSG00000027649.15, intron 11 of 15) 51424 ENSMUSG00000027649.15 ENSMUSG00000027649 ENSMUST00000156300 Ctnnbl1 protein_coding Interval_54184 chr14 66047604 66048151 + 0 NA intron (ENSMUSG00000022039.6, intron 12 of 12) protein_coding-intron (ENSMUSG00000022039.6, intron 12 of 20) 2797 ENSMUSG00000068165.3 ENSMUSG00000068165 ENSMUST00000089275 Gm10233 processed_pseudogene Interval_1377 chr1 21101150 21101958 + 0 NA Intergenic Intergenic 21440 ENSMUSG00000099971.1 ENSMUSG00000099971 ENSMUST00000186612 Gm28287 antisense Interval_41223 chr12 111928177 111928631 + 0 NA Intergenic Intergenic 2633 ENSMUSG00000113926.1 ENSMUSG00000113926 ENSMUST00000222670 Gm3565 processed_pseudogene Interval_157835 chr8 74819566 74819962 + 0 NA intron (ENSMUSG00000079011.9, intron 2 of 2) lincRNA-intron (ENSMUSG00000079011.9, intron 4 of 9) 14173 ENSMUSG00000079011.9 ENSMUSG00000079011 ENSMUST00000137218 Gm11033 lincRNA Interval_127263 chr5 101976895 101978558 + 0 NA intron (ENSMUSG00000043940.15, intron 1 of 64) protein_coding-intron (ENSMUSG00000043940.15, intron 4 of 66) 3832 ENSMUSG00000043940.15 ENSMUSG00000043940 ENSMUST00000172512 Wdfy3 protein_coding Interval_117559 chr4 124673069 124673294 + 0 NA Intergenic Intergenic -16012 ENSMUSG00000098760.1 ENSMUSG00000098760 ENSMUST00000184062 Gm2164 antisense Interval_147316 chr7 65782589 65783000 + 0 NA Intergenic Intergenic -2065 ENSMUSG00000068480.6 ENSMUSG00000068480 ENSMUST00000089593 Gm7551 processed_pseudogene Interval_85755 chr19 30463407 30463643 + 0 NA Intergenic Intergenic 27760 ENSMUSG00000118374.1 ENSMUSG00000118374 ENSMUST00000236809 Gm17885 processed_pseudogene Interval_92839 chr2 66199286 66199581 + 0 NA intron (ENSMUSG00000034848.17, intron 24 of 27) protein_coding-intron (ENSMUSG00000034848.17, intron 24 of 28) 11597 ENSMUSG00000086671.1 ENSMUSG00000086671 ENSMUST00000128859 Gm13618 antisense Interval_159119 chr8 90825087 90825906 + 0 NA Intergenic Intergenic -8103 ENSMUSG00000110332.1 ENSMUSG00000110332 ENSMUST00000209208 Gm19935 protein_coding Interval_4081 chr1 67640322 67641048 + 0 NA Intergenic Intergenic 23710 ENSMUSG00000095282.1 ENSMUSG00000095282 ENSMUST00000174899 Gm22548 miRNA Interval_120395 chr4 148352618 148352846 + 0 NA Intergenic Intergenic 6728 ENSMUSG00000086326.1 ENSMUSG00000086326 ENSMUST00000138802 Gm13200 lincRNA Interval_21984 chr11 5562791 5564382 + 0 NA Intergenic Intergenic -2851 ENSMUSG00000077304.1 ENSMUSG00000077304 ENSMUST00000104116 Gm22471 snoRNA Interval_161983 chr8 124260141 124260909 + 0 NA intron (ENSMUSG00000089704.9, intron 1 of 4) protein_coding-intron (ENSMUSG00000089704.9, intron 1 of 15) -34841 ENSMUSG00000089704.9 ENSMUSG00000089704 ENSMUST00000147911 Galnt2 protein_coding Interval_140342 chr6 116738816 116739167 + 0 NA Intergenic Intergenic -22262 ENSMUSG00000048108.13 ENSMUSG00000048108 ENSMUST00000129255 Tmem72 protein_coding Interval_91593 chr2 44309464 44310008 + 0 NA intron (ENSMUSG00000049744.15, intron 12 of 14) protein_coding-intron (ENSMUSG00000049744.15, intron 12 of 13) -119199 ENSMUSG00000088124.1 ENSMUSG00000088124 ENSMUST00000157499 Gm22867 snRNA Interval_135623 chr6 41730810 41731045 + 0 NA Intergenic Intergenic -34741 ENSMUSG00000103788.1 ENSMUSG00000103788 ENSMUST00000192406 Gm37527 TEC Interval_24096 chr11 30212205 30212405 + 0 NA intron (ENSMUSG00000020315.18, intron 2 of 30) protein_coding-intron (ENSMUSG00000020315.18, intron 2 of 35) -55159 ENSMUSG00000073073.4 ENSMUSG00000073073 ENSMUST00000146985 Gm8098 processed_transcript Interval_168988 chr9 90051753 90052075 + 0 NA Intergenic Intergenic -2640 ENSMUSG00000032359.14 ENSMUSG00000032359 ENSMUST00000151219 Ctsh protein_coding Interval_74528 chr17 52981157 52981971 + 0 NA Intergenic Intergenic 31504 ENSMUSG00000035580.10 ENSMUSG00000035580 ENSMUST00000184279 Kcnh8 protein_coding Interval_165380 chr9 46913656 46914472 + 0 NA intron (ENSMUSG00000099696.6, intron 1 of 3) lincRNA-intron (ENSMUSG00000099696.6, intron 1 of 3) 571 ENSMUSG00000099696.6 ENSMUSG00000099696 ENSMUST00000189828 2900052N01Rik lincRNA Interval_548 chr1 7199701 7200286 + 0 NA Intergenic Intergenic -10074 ENSMUSG00000103709.1 ENSMUSG00000103709 ENSMUST00000195269 Nras-ps2 processed_pseudogene Interval_51002 chr14 21567261 21567483 + 0 NA intron (ENSMUSG00000021767.19, intron 2 of 5) protein_coding-intron (ENSMUSG00000021767.19, intron 2 of 16) 50497 ENSMUSG00000021767.19 ENSMUSG00000021767 ENSMUST00000226589 Kat6b protein_coding Interval_138359 chr6 87584974 87585470 + 0 NA intron (ENSMUSG00000049409.9, intron 2 of 2) protein_coding-intron (ENSMUSG00000049409.9, intron 2 of 2) 5521 ENSMUSG00000049409.9 ENSMUSG00000049409 ENSMUST00000203636 Prokr1 protein_coding Interval_111259 chr4 16095257 16095606 + 0 NA Intergenic Intergenic 25457 ENSMUSG00000081679.1 ENSMUSG00000081679 ENSMUST00000117437 Gm11874 processed_pseudogene Interval_155261 chr8 29135223 29135790 + 0 NA intron (ENSMUSG00000063626.6, intron 1 of 14) protein_coding-intron (ENSMUSG00000063626.6, intron 1 of 17) -22730 ENSMUSG00000109648.1 ENSMUSG00000109648 ENSMUST00000209370 Svet1 TEC Interval_148562 chr7 82697647 82698072 + 0 NA exon (ENSMUSG00000108991.1, exon 1 of 1) TEC-exon (ENSMUSG00000108991.1, exon 1 of 1) 2460 ENSMUSG00000108991.1 ENSMUSG00000108991 ENSMUST00000209142 Gm45807 TEC Interval_158962 chr8 88265740 88266654 + 0 NA Intergenic Intergenic 14225 ENSMUSG00000036779.12 ENSMUSG00000036779 ENSMUST00000154115 Tent4b protein_coding Interval_138116 chr6 85280991 85282041 + 0 NA intron (ENSMUSG00000033720.12, intron 6 of 7) protein_coding-intron (ENSMUSG00000033720.12, intron 6 of 13) 51906 ENSMUSG00000033720.12 ENSMUSG00000033720 ENSMUST00000203035 Sfxn5 protein_coding Interval_71280 chr17 21858503 21858809 + 0 NA Intergenic Intergenic -12884 ENSMUSG00000069743.5 ENSMUSG00000069743 ENSMUST00000232918 Zfp820 protein_coding Interval_78581 chr18 14889774 14890504 + 0 NA intron (ENSMUSG00000054321.7, intron 14 of 14) protein_coding-intron (ENSMUSG00000054321.7, intron 14 of 14) 33972 ENSMUSG00000117436.1 ENSMUSG00000117436 ENSMUST00000234412 Gm9474 processed_pseudogene Interval_1077 chr1 15136140 15136447 + 0 NA Intergenic Intergenic -117134 ENSMUSG00000088159.1 ENSMUSG00000088159 ENSMUST00000157534 Gm26345 snoRNA Interval_123357 chr5 31697240 31698592 + 0 NA promoter-TSS (ENSMUSG00000029136.9) protein_coding-promoter-TSS (ENSMUSG00000029136.9) 166 ENSMUSG00000052139.18 ENSMUSG00000052139 ENSMUST00000202087 Babam2 protein_coding Interval_61133 chr15 79441322 79442358 + 0 NA promoter-TSS (ENSMUSG00000022433.20) protein_coding-promoter-TSS (ENSMUSG00000022433.20) 296 ENSMUSG00000022433.20 ENSMUSG00000022433 ENSMUST00000156043 Csnk1e protein_coding Interval_40182 chr12 102387008 102387956 + 0 NA intron (ENSMUSG00000044456.16, intron 8 of 9) protein_coding-intron (ENSMUSG00000044456.16, intron 8 of 9) 18664 ENSMUSG00000021190.14 ENSMUSG00000021190 ENSMUST00000146499 Lgmn protein_coding Interval_80994 chr18 52465461 52466297 + 0 NA intron (ENSMUSG00000024528.8, intron 1 of 3) protein_coding-intron (ENSMUSG00000024528.8, intron 1 of 7) 157 ENSMUSG00000024528.8 ENSMUSG00000024528 ENSMUST00000237434 Srfbp1 protein_coding Interval_8450 chr1 139479603 139481494 + 0 NA exon (ENSMUSG00000033952.14, exon 18 of 28) protein_coding-exon (ENSMUSG00000033952.14, exon 18 of 28) 25776 ENSMUSG00000033952.14 ENSMUSG00000033952 ENSMUST00000196272 Aspm protein_coding Interval_92463 chr2 59869444 59870035 + 0 NA TTS (ENSMUSG00000026988.15) protein_coding-TTS (ENSMUSG00000026988.15) -7013 ENSMUSG00000026988.15 ENSMUSG00000026988 ENSMUST00000131285 Wdsub1 protein_coding Interval_23369 chr11 21949814 21950634 + 0 NA Intergenic Intergenic -2916 ENSMUSG00000082874.4 ENSMUSG00000082874 ENSMUST00000120694 Rpl15-ps1 processed_pseudogene Interval_161382 chr8 120104831 120106521 + 0 NA intron (ENSMUSG00000092329.1, intron 1 of 15) protein_coding-intron (ENSMUSG00000092329.1, intron 1 of 15) -3765 ENSMUSG00000102665.1 ENSMUSG00000102665 ENSMUST00000194351 Gm38379 TEC Interval_1290 chr1 19217588 19217952 + 0 NA intron (ENSMUSG00000025927.13, intron 2 of 7) protein_coding-intron (ENSMUSG00000025927.13, intron 2 of 6) 5464 ENSMUSG00000025927.13 ENSMUSG00000025927 ENSMUST00000186972 Tfap2b protein_coding Interval_139567 chr6 101266564 101267080 + 0 NA intron (ENSMUSG00000035357.17, intron 3 of 3) protein_coding-intron (ENSMUSG00000035357.17, intron 3 of 9) 21688 ENSMUSG00000108076.1 ENSMUSG00000108076 ENSMUST00000203503 9530086O07Rik TEC Interval_147152 chr7 63901009 63901436 + 0 NA intron (ENSMUSG00000052040.10, intron 1 of 1) protein_coding-intron (ENSMUSG00000052040.10, intron 1 of 1) 3248 ENSMUSG00000098708.7 ENSMUSG00000098708 ENSMUST00000184360 Gm27252 processed_transcript Interval_119133 chr4 135768738 135769362 + 0 NA intron (ENSMUSG00000037139.15, intron 5 of 36) protein_coding-intron (ENSMUSG00000037139.15, intron 5 of 36) -12355 ENSMUSG00000082743.1 ENSMUSG00000082743 ENSMUST00000119054 Gm12988 processed_pseudogene Interval_17947 chr10 81018235 81018833 + 0 NA Intergenic Intergenic -3621 ENSMUSG00000048240.14 ENSMUSG00000048240 ENSMUST00000126317 Gng7 protein_coding Interval_39778 chr12 98181716 98182324 + 0 NA Intergenic Intergenic 34508 ENSMUSG00000021003.10 ENSMUSG00000021003 ENSMUST00000221322 Galc protein_coding Interval_131830 chr5 140181110 140181940 + 0 NA intron (ENSMUSG00000029554.15, intron 3 of 3) protein_coding-intron (ENSMUSG00000029554.15, intron 11 of 17) -6607 ENSMUSG00000029554.15 ENSMUSG00000029554 ENSMUST00000132832 Mad1l1 protein_coding Interval_99143 chr2 157457018 157458873 + 0 NA intron (ENSMUSG00000027646.15, intron 4 of 4) protein_coding-intron (ENSMUSG00000027646.15, intron 4 of 13) 33829 ENSMUSG00000027646.15 ENSMUSG00000027646 ENSMUST00000109529 Src protein_coding Interval_63659 chr15 102624700 102626043 + 0 NA promoter-TSS (ENSMUSG00000099083.7) protein_coding-promoter-TSS (ENSMUSG00000099083.7) 75 ENSMUSG00000099083.7 ENSMUSG00000099083 ENSMUST00000183786 Atf7 protein_coding Interval_25667 chr11 50586939 50588039 + 0 NA Intergenic Intergenic -14595 ENSMUSG00000036545.9 ENSMUSG00000036545 ENSMUST00000127534 Adamts2 protein_coding Interval_126716 chr5 92238644 92240660 + 0 NA intron (ENSMUSG00000029410.11, intron 10 of 16) protein_coding-intron (ENSMUSG00000029410.11, intron 9 of 15) -10631 ENSMUSG00000029410.11 ENSMUSG00000029410 ENSMUST00000031359 Ppef2 protein_coding Interval_83560 chr18 89503456 89503666 + 0 NA intron (ENSMUSG00000073514.4, intron 1 of 2) protein_coding-intron (ENSMUSG00000073514.4, intron 3 of 7) 30901 ENSMUSG00000089885.2 ENSMUSG00000089885 ENSMUST00000159905 Gm16296 processed_pseudogene Interval_39387 chr12 87052853 87053355 + 0 NA intron (ENSMUSG00000034145.14, intron 2 of 4) protein_coding-intron (ENSMUSG00000034145.14, intron 3 of 24) -14373 ENSMUSG00000080868.1 ENSMUSG00000080868 ENSMUST00000119807 Gm15745 processed_pseudogene Interval_21663 chr11 3538919 3539821 + 0 NA promoter-TSS (ENSMUSG00000020439.17) protein_coding-promoter-TSS (ENSMUSG00000020439.17) -78 ENSMUSG00000020439.17 ENSMUSG00000020439 ENSMUST00000151804 Smtn protein_coding Interval_18504 chr10 86784245 86786278 + 0 NA intron (ENSMUSG00000054027.8, intron 1 of 13) protein_coding-intron (ENSMUSG00000054027.8, intron 1 of 13) 21289 ENSMUSG00000112743.1 ENSMUSG00000112743 ENSMUST00000218802 Gm49358 protein_coding Interval_117230 chr4 120788373 120788949 + 0 NA intron (ENSMUSG00000032897.17, intron 2 of 4) protein_coding-intron (ENSMUSG00000032897.17, intron 2 of 9) -15964 ENSMUSG00000065409.1 ENSMUSG00000065409 ENSMUST00000083475 Mir30e miRNA Interval_45216 chr13 53240323 53240998 + 0 NA intron (ENSMUSG00000021464.14, intron 1 of 8) protein_coding-intron (ENSMUSG00000021464.14, intron 1 of 8) 34998 ENSMUSG00000021464.14 ENSMUSG00000021464 ENSMUST00000149299 Ror2 protein_coding Interval_140930 chr6 122804413 122804954 + 0 NA Intergenic Intergenic -6487 ENSMUSG00000107868.1 ENSMUSG00000107868 ENSMUST00000204407 Gm5112 TEC Interval_91841 chr2 50165438 50166734 + 0 NA intron (ENSMUSG00000050447.15, intron 2 of 4) protein_coding-intron (ENSMUSG00000050447.15, intron 3 of 5) 37717 ENSMUSG00000050447.15 ENSMUSG00000050447 ENSMUST00000126337 Lypd6 protein_coding Interval_35573 chr12 24948321 24948921 + 0 NA intron (ENSMUSG00000020646.17, intron 5 of 9) protein_coding-intron (ENSMUSG00000020646.17, intron 5 of 9) -26372 ENSMUSG00000036333.11 ENSMUSG00000036333 ENSMUST00000222481 Kidins220 protein_coding Interval_130629 chr5 129331186 129332265 + 0 NA Intergenic Intergenic -32395 ENSMUSG00000104681.1 ENSMUSG00000104681 ENSMUST00000199076 Gm43001 lincRNA Interval_117197 chr4 120515996 120516221 + 0 NA intron (ENSMUSG00000000085.16, intron 3 of 6) protein_coding-intron (ENSMUSG00000000085.16, intron 12 of 16) -16123 ENSMUSG00000047518.3 ENSMUSG00000047518 ENSMUST00000062990 Slfnl1 protein_coding Interval_12250 chr1 191125448 191126508 + 0 NA Intergenic Intergenic -6679 ENSMUSG00000102777.1 ENSMUSG00000102777 ENSMUST00000195344 Gm38161 lincRNA Interval_67905 chr16 59385525 59385696 + 0 NA Intergenic Intergenic -21658 ENSMUSG00000095706.3 ENSMUSG00000095706 ENSMUST00000055868 Olfr209 protein_coding Interval_34851 chr12 12708457 12709664 + 0 NA Intergenic Intergenic 9021 ENSMUSG00000075893.1 ENSMUSG00000075893 ENSMUST00000101943 Gm25538 snRNA Interval_126888 chr5 96750607 96750832 + 0 NA intron (ENSMUSG00000034687.8, intron 59 of 73) protein_coding-intron (ENSMUSG00000034687.8, intron 59 of 73) -11355 ENSMUSG00000106526.1 ENSMUSG00000106526 ENSMUST00000200077 Gm42604 antisense Interval_79343 chr18 30768000 30768221 + 0 NA Intergenic Intergenic -159220 ENSMUSG00000117526.1 ENSMUSG00000117526 ENSMUST00000235078 Gm41780 processed_pseudogene Interval_94508 chr2 91751957 91752525 + 0 NA intron (ENSMUSG00000040506.16, intron 1 of 8) protein_coding-intron (ENSMUSG00000040506.16, intron 1 of 17) 22059 ENSMUSG00000040506.16 ENSMUSG00000040506 ENSMUST00000142224 Ambra1 protein_coding Interval_24367 chr11 32693554 32695390 + 0 NA intron (ENSMUSG00000020271.17, intron 3 of 4) protein_coding-intron (ENSMUSG00000020271.17, intron 2 of 13) 51568 ENSMUSG00000020271.17 ENSMUSG00000020271 ENSMUST00000143290 Fbxw11 protein_coding Interval_134076 chr6 18848460 18849456 + 0 NA promoter-TSS (ENSMUSG00000106874.1) lincRNA-promoter-TSS (ENSMUSG00000106874.1) 290 ENSMUSG00000044155.11 ENSMUSG00000044155 ENSMUST00000201141 Lsm8 protein_coding Interval_51727 chr14 31668945 31669940 + 0 NA TTS (ENSMUSG00000021900.10) protein_coding-TTS (ENSMUSG00000021900.10) 28414 ENSMUSG00000021900.10 ENSMUSG00000021900 ENSMUST00000090147 Btd protein_coding Interval_69294 chr16 91963675 91963914 + 0 NA TTS (ENSMUSG00000087190.2) antisense-TTS (ENSMUSG00000087190.2) -19646 ENSMUSG00000099268.1 ENSMUSG00000099268 ENSMUST00000184087 Gm27773 miRNA Interval_92143 chr2 54064606 54065428 + 0 NA Intergenic Intergenic 20535 ENSMUSG00000075334.2 ENSMUSG00000075334 ENSMUST00000100089 Rprm protein_coding Interval_30551 chr11 95071316 95071499 + 0 NA intron (ENSMUSG00000001507.16, intron 1 of 4) protein_coding-intron (ENSMUSG00000001507.16, intron 1 of 25) 5390 ENSMUSG00000001507.16 ENSMUSG00000001507 ENSMUST00000145671 Itga3 protein_coding Interval_30223 chr11 91095770 91096494 + 0 NA Intergenic Intergenic -234784 ENSMUSG00000083764.1 ENSMUSG00000083764 ENSMUST00000118450 Gm11516 processed_pseudogene Interval_133385 chr6 4544422 4546153 + 0 NA Intergenic Intergenic 7798 ENSMUSG00000029661.16 ENSMUSG00000029661 ENSMUST00000203346 Col1a2 protein_coding Interval_127671 chr5 106465247 106466318 + 0 NA TTS (ENSMUSG00000097018.2) lincRNA-TTS (ENSMUSG00000097018.2) 5225 ENSMUSG00000097018.2 ENSMUSG00000097018 ENSMUST00000180862 Gm26872 lincRNA Interval_125478 chr5 67446040 67446635 + 0 NA Intergenic Intergenic -7142 ENSMUSG00000106925.1 ENSMUSG00000106925 ENSMUST00000202231 Gm20072 processed_pseudogene Interval_11752 chr1 185203437 185204592 + 0 NA promoter-TSS (ENSMUSG00000039318.12) protein_coding-promoter-TSS (ENSMUSG00000039318.12) -38893 ENSMUSG00000077571.1 ENSMUSG00000077571 ENSMUST00000104383 Snora36b snoRNA Interval_107383 chr3 107112450 107113762 + 0 NA exon (ENSMUSG00000040724.5, exon 3 of 3) protein_coding-exon (ENSMUSG00000040724.5, exon 3 of 3) 11960 ENSMUSG00000040724.5 ENSMUSG00000040724 ENSMUST00000196403 Kcna2 protein_coding Interval_54667 chr14 73126354 73126601 + 0 NA intron (ENSMUSG00000022106.14, intron 1 of 6) protein_coding-intron (ENSMUSG00000022106.14, intron 1 of 6) -16386 ENSMUSG00000022106.14 ENSMUSG00000022106 ENSMUST00000170278 Rcbtb2 protein_coding Interval_20322 chr10 116876755 116877138 + 0 NA intron (ENSMUSG00000034057.8, intron 1 of 24) protein_coding-intron (ENSMUSG00000034057.8, intron 1 of 24) 19973 ENSMUSG00000034057.8 ENSMUSG00000034057 ENSMUST00000048229 Myrfl protein_coding Interval_109221 chr3 137981247 137982879 + 0 NA promoter-TSS (ENSMUSG00000028159.14) protein_coding-promoter-TSS (ENSMUSG00000028159.14) -18876 ENSMUSG00000105296.1 ENSMUSG00000105296 ENSMUST00000199386 Gm19708 lincRNA Interval_43478 chr13 31728192 31729703 + 0 NA Intergenic Intergenic 8793 ENSMUSG00000065843.1 ENSMUSG00000065843 ENSMUST00000083909 Gm25186 snRNA Interval_59773 chr15 59143831 59144089 + 0 NA Intergenic Intergenic -61955 ENSMUSG00000022353.10 ENSMUSG00000022353 ENSMUST00000227797 Mtss1 protein_coding Interval_49675 chr13 113923760 113924147 + 0 NA intron (ENSMUSG00000042348.10, intron 2 of 3) protein_coding-intron (ENSMUSG00000042348.10, intron 2 of 4) 129360 ENSMUSG00000042348.10 ENSMUSG00000042348 ENSMUST00000224068 Arl15 protein_coding Interval_84686 chr19 15179035 15179334 + 0 NA Intergenic Intergenic -218418 ENSMUSG00000063586.1 ENSMUSG00000063586 ENSMUST00000072982 Gm5513 processed_pseudogene Interval_18384 chr10 85458812 85459372 + 0 NA intron (ENSMUSG00000020042.15, intron 1 of 16) protein_coding-intron (ENSMUSG00000020042.15, intron 1 of 9) 125191 ENSMUSG00000087895.1 ENSMUSG00000087895 ENSMUST00000157270 Gm25281 miRNA Interval_25407 chr11 47656098 47656335 + 0 NA intron (ENSMUSG00000020354.15, intron 1 of 2) protein_coding-intron (ENSMUSG00000020354.15, intron 1 of 2) -18747 ENSMUSG00000020354.15 ENSMUSG00000020354 ENSMUST00000128558 Sgcd protein_coding Interval_19015 chr10 93808945 93809828 + 0 NA Intergenic Intergenic 2088 ENSMUSG00000096598.1 ENSMUSG00000096598 ENSMUST00000178842 Gm26239 snRNA Interval_76274 chr17 78661035 78661882 + 0 NA intron (ENSMUSG00000024077.15, intron 13 of 17) protein_coding-intron (ENSMUSG00000024077.15, intron 11 of 15) 75738 ENSMUSG00000024077.15 ENSMUSG00000024077 ENSMUST00000145480 Strn protein_coding Interval_151561 chr7 123638346 123638727 + 0 NA Intergenic Intergenic -157607 ENSMUSG00000030757.13 ENSMUSG00000030757 ENSMUST00000128217 Zkscan2 protein_coding Interval_99040 chr2 156809279 156811019 + 0 NA Intergenic Intergenic -19746 ENSMUSG00000082196.3 ENSMUSG00000082196 ENSMUST00000120090 Gm14231 processed_pseudogene Interval_136583 chr6 56101962 56102417 + 0 NA exon (ENSMUSG00000004347.17, exon 17 of 17) protein_coding-exon (ENSMUSG00000004347.17, exon 17 of 17) 70842 ENSMUSG00000106152.1 ENSMUSG00000106152 ENSMUST00000198921 Gm44413 miRNA Interval_143567 chr7 12874511 12875016 + 0 NA Intergenic Intergenic -6180 ENSMUSG00000110320.1 ENSMUSG00000110320 ENSMUST00000210319 Gm31152 lincRNA Interval_43656 chr13 34627119 34628136 + 0 NA TTS (ENSMUSG00000021411.16) protein_coding-TTS (ENSMUSG00000021411.16) -15381 ENSMUSG00000113185.1 ENSMUSG00000113185 ENSMUST00000221927 Gm47127 lincRNA Interval_38509 chr12 79742660 79742859 + 0 NA intron (ENSMUSG00000059060.15, intron 8 of 10) protein_coding-intron (ENSMUSG00000059060.15, intron 8 of 10) 182735 ENSMUSG00000112765.1 ENSMUSG00000112765 ENSMUST00000219857 9430078K24Rik lincRNA Interval_167508 chr9 70152901 70153295 + 0 NA Intergenic Intergenic -4162 ENSMUSG00000077660.1 ENSMUSG00000077660 ENSMUST00000104472 Gm24257 snoRNA Interval_139767 chr6 108524431 108524709 + 0 NA intron (ENSMUSG00000030102.11, intron 60 of 61) protein_coding-intron (ENSMUSG00000030102.11, intron 60 of 61) 1117 ENSMUSG00000107458.1 ENSMUSG00000107458 ENSMUST00000203360 Gm44040 antisense Interval_125008 chr5 63788424 63788738 + 0 NA intron (ENSMUSG00000090061.9, intron 4 of 6) protein_coding-intron (ENSMUSG00000090061.9, intron 3 of 6) -11881 ENSMUSG00000090061.9 ENSMUSG00000090061 ENSMUST00000162757 Nwd2 protein_coding Interval_83765 chr19 4468505 4469012 + 0 NA intron (ENSMUSG00000049303.10, intron 1 of 3) protein_coding-intron (ENSMUSG00000049303.10, intron 1 of 7) 8368 ENSMUSG00000049303.10 ENSMUSG00000049303 ENSMUST00000133222 Syt12 protein_coding Interval_88216 chr19 60740563 60740801 + 0 NA Intergenic Intergenic -15305 ENSMUSG00000072437.4 ENSMUSG00000072437 ENSMUST00000088237 Nanos1 protein_coding Interval_150792 chr7 114638447 114639261 + 0 NA Intergenic Intergenic -2559 ENSMUSG00000030669.13 ENSMUSG00000030669 ENSMUST00000205714 Calca protein_coding Interval_63887 chr16 4272375 4272598 + 0 NA Intergenic Intergenic 42185 ENSMUSG00000089645.3 ENSMUSG00000089645 ENSMUST00000161633 Gm5766 transcribed_processed_pseudogene Interval_118365 chr4 130915348 130915695 + 0 NA promoter-TSS (ENSMUSG00000028581.17) protein_coding-promoter-TSS (ENSMUSG00000028581.17) 2163 ENSMUSG00000028581.17 ENSMUSG00000028581 ENSMUST00000125332 Laptm5 protein_coding Interval_123289 chr5 31149677 31150645 + 0 NA TTS (ENSMUSG00000101678.3) protein_coding-TTS (ENSMUSG00000101678.3) -4101 ENSMUSG00000107283.3 ENSMUSG00000107283 ENSMUST00000202203 Mpv17 protein_coding Interval_149642 chr7 100288042 100289112 + 0 NA intron (ENSMUSG00000051048.17, intron 1 of 12) protein_coding-intron (ENSMUSG00000051048.17, intron 1 of 12) -13004 ENSMUSG00000051048.17 ENSMUSG00000051048 ENSMUST00000208565 P4ha3 protein_coding Interval_7227 chr1 128030470 128030713 + 0 NA intron (ENSMUSG00000036086.16, intron 6 of 20) protein_coding-intron (ENSMUSG00000036086.16, intron 6 of 20) -7978 ENSMUSG00000058603.10 ENSMUSG00000058603 ENSMUST00000121497 Rpl28-ps1 processed_pseudogene Interval_123197 chr5 30548992 30549190 + 0 NA Intergenic Intergenic -3255 ENSMUSG00000053194.2 ENSMUSG00000053194 ENSMUST00000065486 Cib4 protein_coding Interval_141092 chr6 124919648 124920409 + 0 NA promoter-TSS (ENSMUSG00000030122.12) protein_coding-promoter-TSS (ENSMUSG00000030122.12) 75 ENSMUSG00000030122.12 ENSMUSG00000030122 ENSMUST00000134916 Ptms protein_coding Interval_103552 chr3 49068223 49069688 + 0 NA intron (ENSMUSG00000102263.1, intron 2 of 2) lincRNA-intron (ENSMUSG00000102263.1, intron 2 of 2) 6577 ENSMUSG00000102263.1 ENSMUSG00000102263 ENSMUST00000194963 Gm31415 lincRNA Interval_83336 chr18 84350592 84350805 + 0 NA intron (ENSMUSG00000048410.17, intron 3 of 5) protein_coding-intron (ENSMUSG00000048410.17, intron 2 of 2) 25448 ENSMUSG00000102951.1 ENSMUSG00000102951 ENSMUST00000193817 Gm37216 TEC Interval_134266 chr6 24214025 24214692 + 0 NA Intergenic Intergenic 70990 ENSMUSG00000096522.1 ENSMUSG00000096522 ENSMUST00000178407 Gm26386 miRNA Interval_94368 chr2 90550696 90551006 + 0 NA intron (ENSMUSG00000025314.16, intron 1 of 23) protein_coding-intron (ENSMUSG00000025314.16, intron 1 of 23) 29796 ENSMUSG00000025314.16 ENSMUSG00000025314 ENSMUST00000168621 Ptprj protein_coding Interval_160282 chr8 107671395 107671674 + 0 NA Intergenic Intergenic 19310 ENSMUSG00000110508.1 ENSMUSG00000110508 ENSMUST00000212585 Gm8940 processed_pseudogene Interval_5906 chr1 93134839 93136227 + 0 NA promoter-TSS (ENSMUSG00000026272.6) protein_coding-promoter-TSS (ENSMUSG00000026272.6) -35 ENSMUSG00000026272.6 ENSMUSG00000026272 ENSMUST00000190603 Agxt protein_coding Interval_22084 chr11 6244067 6245189 + 0 NA Intergenic Intergenic 2250 ENSMUSG00000081153.1 ENSMUSG00000081153 ENSMUST00000117212 Gm11401 processed_pseudogene Interval_108637 chr3 129686518 129687534 + 0 NA intron (ENSMUSG00000028017.7, intron 14 of 17) protein_coding-intron (ENSMUSG00000028017.7, intron 20 of 23) -2785 ENSMUSG00000092701.1 ENSMUSG00000092701 ENSMUST00000174960 Gm24515 miRNA Interval_52642 chr14 48191514 48192671 + 0 NA intron (ENSMUSG00000021846.9, intron 1 of 4) protein_coding-intron (ENSMUSG00000021846.9, intron 2 of 5) -4668 ENSMUSG00000115555.1 ENSMUSG00000115555 ENSMUST00000227419 Gm49307 TEC Interval_80073 chr18 37302287 37303280 + 0 NA exon (ENSMUSG00000045498.1, exon 1 of 1) protein_coding-exon (ENSMUSG00000045498.1, exon 1 of 1) 1984 ENSMUSG00000045498.1 ENSMUSG00000045498 ENSMUST00000051754 Pcdhb3 protein_coding Interval_155851 chr8 40225511 40225713 + 0 NA Intergenic Intergenic 82317 ENSMUSG00000098431.1 ENSMUSG00000098431 ENSMUST00000183849 Mir7666 miRNA Interval_156083 chr8 43791096 43792448 + 0 NA Intergenic Intergenic -13072 ENSMUSG00000109826.1 ENSMUSG00000109826 ENSMUST00000209197 Gm45658 processed_pseudogene Interval_105571 chr3 87828662 87829454 + 0 NA Intergenic Intergenic -17953 ENSMUSG00000028071.12 ENSMUSG00000028071 ENSMUST00000194639 Sh2d2a protein_coding Interval_164342 chr9 35515906 35516282 + 0 NA intron (ENSMUSG00000098590.4, intron 3 of 9) protein_coding-intron (ENSMUSG00000098590.4, intron 3 of 9) 2175 ENSMUSG00000098590.4 ENSMUSG00000098590 ENSMUST00000183573 Gm1113 protein_coding Interval_139955 chr6 113032262 113032582 + 0 NA Intergenic Intergenic 3512 ENSMUSG00000065309.1 ENSMUSG00000065309 ENSMUST00000083375 Gm23244 snRNA Interval_116205 chr4 108672521 108672746 + 0 NA intron (ENSMUSG00000034557.14, intron 12 of 17) protein_coding-intron (ENSMUSG00000034557.14, intron 10 of 15) -35192 ENSMUSG00000091985.1 ENSMUSG00000091985 ENSMUST00000170933 Gm17354 lincRNA Interval_152194 chr7 130565694 130565982 + 0 NA intron (ENSMUSG00000040331.16, intron 1 of 7) protein_coding-intron (ENSMUSG00000030849.18, intron 2 of 6) -26630 ENSMUSG00000040331.16 ENSMUSG00000040331 ENSMUST00000161414 Nsmce4a protein_coding Interval_60768 chr15 76631519 76633227 + 0 NA TTS (ENSMUSG00000059323.14) protein_coding-TTS (ENSMUSG00000059323.14) 1303 ENSMUSG00000059323.14 ENSMUSG00000059323 ENSMUST00000166974 Tonsl protein_coding Interval_80222 chr18 38372109 38372338 + 0 NA Intergenic Intergenic -11685 ENSMUSG00000118140.1 ENSMUSG00000118140 ENSMUST00000235767 Gm4949 processed_pseudogene Interval_31585 chr11 101520891 101521428 + 0 NA intron (ENSMUSG00000017146.12, intron 1 of 2) protein_coding-intron (ENSMUSG00000017146.12, intron 11 of 22) 3699 ENSMUSG00000017146.12 ENSMUSG00000017146 ENSMUST00000190862 Brca1 protein_coding Interval_91855 chr2 50361769 50362263 + 0 NA intron (ENSMUSG00000085862.2, intron 2 of 2) lincRNA-intron (ENSMUSG00000085862.2, intron 1 of 2) -18384 ENSMUSG00000115545.1 ENSMUSG00000115545 ENSMUST00000227437 Gm48908 lincRNA Interval_123546 chr5 33393702 33394362 + 0 NA intron (ENSMUSG00000037355.14, intron 7 of 13) protein_coding-intron (ENSMUSG00000037355.14, intron 7 of 13) 15260 ENSMUSG00000037355.14 ENSMUSG00000037355 ENSMUST00000202816 Uvssa protein_coding Interval_157685 chr8 72292311 72293473 + 0 NA Intergenic Intergenic -8738 ENSMUSG00000110443.1 ENSMUSG00000110443 ENSMUST00000212069 Gm39197 processed_pseudogene Interval_132068 chr5 142589150 142589873 + 0 NA intron (ENSMUSG00000039533.8, intron 1 of 1) protein_coding-intron (ENSMUSG00000039533.8, intron 1 of 6) 19289 ENSMUSG00000039533.8 ENSMUSG00000039533 ENSMUST00000196972 Mmd2 protein_coding Interval_59923 chr15 62002540 62002840 + 0 NA Intergenic Intergenic 16768 ENSMUSG00000022346.16 ENSMUSG00000022346 ENSMUST00000160009 Myc protein_coding Interval_96019 chr2 119216381 119216765 + 0 NA TTS (ENSMUSG00000068580.11) protein_coding-TTS (ENSMUSG00000068580.11) 4931 ENSMUSG00000068580.11 ENSMUSG00000068580 ENSMUST00000147584 Zfyve19 protein_coding Interval_82958 chr18 80009917 80010388 + 0 NA Intergenic Intergenic -2238 ENSMUSG00000117759.1 ENSMUSG00000117759 ENSMUST00000235145 AA684185 transcribed_processed_pseudogene Interval_28795 chr11 78369976 78371288 + 0 NA intron (ENSMUSG00000002057.4, intron 3 of 8) protein_coding-intron (ENSMUSG00000002057.4, intron 3 of 8) 15926 ENSMUSG00000002057.4 ENSMUSG00000002057 ENSMUST00000108294 Foxn1 protein_coding Interval_21158 chr10 126971536 126972933 + 0 NA Intergenic Intergenic -6795 ENSMUSG00000078429.9 ENSMUSG00000078429 ENSMUST00000105255 Ctdsp2 protein_coding Interval_67125 chr16 43638509 43638883 + 0 NA exon (ENSMUSG00000022708.16, exon 15 of 15) protein_coding-exon (ENSMUSG00000022708.16, exon 15 of 15) -1959 ENSMUSG00000076372.2 ENSMUSG00000076372 ENSMUST00000102417 Mir568 miRNA Interval_61708 chr15 83503926 83504519 + 0 NA intron (ENSMUSG00000022442.16, intron 5 of 5) protein_coding-intron (ENSMUSG00000022442.16, intron 4 of 11) 6571 ENSMUSG00000022442.16 ENSMUSG00000022442 ENSMUST00000154401 Ttll1 protein_coding Interval_159212 chr8 91790853 91791049 + 0 NA intron (ENSMUSG00000110304.1, intron 2 of 2) lincRNA-intron (ENSMUSG00000110304.1, intron 2 of 2) 3297 ENSMUSG00000110304.1 ENSMUSG00000110304 ENSMUST00000210339 Gm36380 lincRNA Interval_48193 chr13 97096948 97097555 + 0 NA TTS (ENSMUSG00000057762.6) protein_coding-TTS (ENSMUSG00000057762.6) 1986 ENSMUSG00000057762.6 ENSMUSG00000057762 ENSMUST00000071118 Gm6169 protein_coding Interval_14755 chr10 39612799 39613846 + 0 NA exon (ENSMUSG00000019842.6, exon 1 of 9) protein_coding-exon (ENSMUSG00000019842.6, exon 1 of 9) 360 ENSMUSG00000086915.7 ENSMUSG00000086915 ENSMUST00000143877 Gm16364 antisense Interval_132732 chr5 147459685 147460604 + 0 NA intron (ENSMUSG00000029647.15, intron 3 of 5) protein_coding-intron (ENSMUSG00000029647.15, intron 4 of 18) 20754 ENSMUSG00000107085.1 ENSMUSG00000107085 ENSMUST00000202594 Gm42883 processed_pseudogene Interval_127386 chr5 103654459 103656661 + 0 NA exon (ENSMUSG00000029320.11, exon 1 of 4) protein_coding-exon (ENSMUSG00000029320.11, exon 1 of 4) 163 ENSMUSG00000029320.11 ENSMUSG00000029320 ENSMUST00000154096 1700016H13Rik protein_coding Interval_139394 chr6 99792390 99793446 + 0 NA Intergenic Intergenic 22261 ENSMUSG00000108082.1 ENSMUSG00000108082 ENSMUST00000204852 Gm5314 processed_pseudogene Interval_122613 chr5 24207527 24208359 + 0 NA Intergenic Intergenic 1781 ENSMUSG00000099891.1 ENSMUSG00000099891 ENSMUST00000190879 Gm5575 processed_pseudogene Interval_174299 chrX 144274227 144274455 + 0 NA Intergenic Intergenic -6137 ENSMUSG00000081897.1 ENSMUSG00000081897 ENSMUST00000119534 Gm15067 processed_pseudogene Interval_127569 chr5 105433947 105434208 + 0 NA intron (ENSMUSG00000070639.5, intron 1 of 4) protein_coding-intron (ENSMUSG00000070639.5, intron 1 of 4) 18302 ENSMUSG00000070639.5 ENSMUSG00000070639 ENSMUST00000112707 Lrrc8b protein_coding Interval_26366 chr11 57391126 57391743 + 0 NA Intergenic Intergenic -57673 ENSMUSG00000082476.1 ENSMUSG00000082476 ENSMUST00000118824 Gm12242 processed_pseudogene Interval_114171 chr4 65638433 65639333 + 0 NA intron (ENSMUSG00000028373.16, intron 15 of 21) protein_coding-intron (ENSMUSG00000028373.16, intron 16 of 22) 33634 ENSMUSG00000051675.13 ENSMUSG00000051675 ENSMUST00000156922 Trim32 protein_coding Interval_12465 chr1 193702773 193703671 + 0 NA Intergenic Intergenic -163787 ENSMUSG00000104182.1 ENSMUSG00000104182 ENSMUST00000194272 Gm21362 processed_pseudogene Interval_129118 chr5 117505153 117506794 + 0 NA intron (ENSMUSG00000061578.8, intron 3 of 20) protein_coding-intron (ENSMUSG00000061578.8, intron 3 of 3) -14726 ENSMUSG00000107199.1 ENSMUSG00000107199 ENSMUST00000201553 Gm42550 TEC Interval_56184 chr14 111427700 111430339 + 0 NA Intergenic Intergenic 4293 ENSMUSG00000115650.1 ENSMUSG00000115650 ENSMUST00000226491 Gm48992 lincRNA Interval_63858 chr16 4037074 4037339 + 0 NA promoter-TSS (ENSMUSG00000005980.15) protein_coding-promoter-TSS (ENSMUSG00000005980.15) 51 ENSMUSG00000005980.15 ENSMUSG00000005980 ENSMUST00000175755 Dnase1 protein_coding Interval_96684 chr2 127124599 127124828 + 0 NA intron (ENSMUSG00000034906.15, intron 5 of 16) protein_coding-intron (ENSMUSG00000034906.15, intron 6 of 17) -2663 ENSMUSG00000034906.15 ENSMUSG00000034906 ENSMUST00000156625 Ncaph protein_coding Interval_145299 chr7 31455915 31456347 + 0 NA Intergenic Intergenic 12308 ENSMUSG00000101658.1 ENSMUSG00000101658 ENSMUST00000163647 Scgb1b28-ps unprocessed_pseudogene Interval_134100 chr6 19959078 19959316 + 0 NA Intergenic Intergenic 171144 ENSMUSG00000107067.1 ENSMUSG00000107067 ENSMUST00000201774 Gm42581 processed_pseudogene Interval_108140 chr3 121826160 121827272 + 0 NA Intergenic Intergenic -2867 ENSMUSG00000105889.1 ENSMUSG00000105889 ENSMUST00000198031 Gm42776 processed_pseudogene Interval_14542 chr10 35155711 35156454 + 0 NA Intergenic Intergenic 13769 ENSMUSG00000111216.1 ENSMUSG00000111216 ENSMUST00000216575 Gm47044 processed_pseudogene Interval_111303 chr4 18163835 18164031 + 0 NA Intergenic Intergenic -29598 ENSMUSG00000083150.1 ENSMUSG00000083150 ENSMUST00000120806 Gm11852 processed_pseudogene Interval_8584 chr1 143511607 143512407 + 0 NA Intergenic Intergenic -128657 ENSMUSG00000033849.3 ENSMUSG00000033849 ENSMUST00000038252 B3galt2 protein_coding Interval_39644 chr12 91758747 91759350 + 0 NA intron (ENSMUSG00000020961.15, intron 1 of 6) protein_coding-intron (ENSMUSG00000020961.15, intron 1 of 6) 12122 ENSMUSG00000020961.15 ENSMUSG00000020961 ENSMUST00000166008 Ston2 protein_coding Interval_25548 chr11 49704361 49704599 + 0 NA intron (ENSMUSG00000020362.13, intron 1 of 11) protein_coding-intron (ENSMUSG00000020362.13, intron 1 of 11) 6600 ENSMUSG00000081570.1 ENSMUSG00000081570 ENSMUST00000120146 Gm12192 processed_pseudogene Interval_40714 chr12 107869934 107870142 + 0 NA Intergenic Intergenic -85997 ENSMUSG00000086975.1 ENSMUSG00000086975 ENSMUST00000134448 Gm15208 lincRNA Interval_169690 chr9 100398672 100399248 + 0 NA Intergenic Intergenic -5535 ENSMUSG00000100122.1 ENSMUSG00000100122 ENSMUST00000191093 Gm28267 processed_pseudogene Interval_12995 chr10 8982279 8982524 + 0 NA Intergenic Intergenic 30452 ENSMUSG00000111674.1 ENSMUSG00000111674 ENSMUST00000213841 Gm48728 lincRNA Interval_28034 chr11 72375163 72376217 + 0 NA Intergenic Intergenic -13066 ENSMUSG00000098658.1 ENSMUSG00000098658 ENSMUST00000183389 Mir6338 miRNA Interval_123059 chr5 29319897 29320212 + 0 NA intron (ENSMUSG00000010721.15, intron 4 of 16) protein_coding-intron (ENSMUSG00000010721.15, intron 5 of 16) 16792 ENSMUSG00000093302.1 ENSMUSG00000093302 ENSMUST00000175561 Gm23801 miRNA Interval_86233 chr19 37993110 37993926 + 0 NA intron (ENSMUSG00000048612.16, intron 5 of 9) protein_coding-intron (ENSMUSG00000048612.16, intron 5 of 52) 49881 ENSMUSG00000048612.16 ENSMUSG00000048612 ENSMUST00000226084 Myof protein_coding Interval_114598 chr4 82933653 82934531 + 0 NA intron (ENSMUSG00000059049.14, intron 27 of 36) protein_coding-intron (ENSMUSG00000059049.14, intron 26 of 35) -48944 ENSMUSG00000038192.5 ENSMUSG00000038192 ENSMUST00000048430 Cer1 protein_coding Interval_80913 chr18 50121037 50122268 + 0 NA Intergenic Intergenic -6842 ENSMUSG00000024507.6 ENSMUSG00000024507 ENSMUST00000127325 Hsd17b4 protein_coding Interval_109192 chr3 137815315 137816147 + 0 NA Intergenic Intergenic -12262 ENSMUSG00000105427.1 ENSMUSG00000105427 ENSMUST00000198262 Gm31678 lincRNA Interval_7126 chr1 126752332 126754152 + 0 NA intron (ENSMUSG00000049690.15, intron 1 of 2) protein_coding-intron (ENSMUSG00000049690.15, intron 1 of 12) 123373 ENSMUSG00000101600.1 ENSMUSG00000101600 ENSMUST00000188266 4930599A14Rik lincRNA Interval_117581 chr4 124824709 124826173 + 0 NA intron (ENSMUSG00000028890.13, intron 7 of 11) protein_coding-intron (ENSMUSG00000028890.13, intron 6 of 10) 4620 ENSMUSG00000084526.1 ENSMUSG00000084526 ENSMUST00000122577 n-R5s192 rRNA Interval_57383 chr15 10447217 10447707 + 0 NA TTS (ENSMUSG00000044224.16) protein_coding-TTS (ENSMUSG00000044224.16) 4448 ENSMUSG00000044224.16 ENSMUSG00000044224 ENSMUST00000147224 Dnajc21 protein_coding Interval_13192 chr10 12928971 12932186 + 0 NA Intergenic Intergenic -7488 ENSMUSG00000097378.8 ENSMUSG00000097378 ENSMUST00000180529 B230208H11Rik lincRNA Interval_146696 chr7 49496822 49497599 + 0 NA intron (ENSMUSG00000052512.17, intron 11 of 38) protein_coding-intron (ENSMUSG00000052512.17, intron 11 of 37) 27498 ENSMUSG00000102148.1 ENSMUSG00000102148 ENSMUST00000193746 Gm38059 TEC Interval_80851 chr18 49386974 49387275 + 0 NA Intergenic Intergenic 58869 ENSMUSG00000117724.1 ENSMUSG00000117724 ENSMUST00000235797 Gm50231 processed_pseudogene Interval_2155 chr1 36761696 36762057 + 0 NA promoter-TSS (ENSMUSG00000026117.10) protein_coding-promoter-TSS (ENSMUSG00000026117.10) 3296 ENSMUSG00000097291.1 ENSMUSG00000097291 ENSMUST00000180475 Gm18828 transcribed_processed_pseudogene Interval_6596 chr1 118012277 118013663 + 0 NA intron (ENSMUSG00000100703.6, intron 4 of 4) transcribed_unprocessed_pseudogene-intron (ENSMUSG00000100703.6, intron 4 of 4) 2459 ENSMUSG00000100703.6 ENSMUSG00000100703 ENSMUST00000189292 Gm28358 transcribed_unprocessed_pseudogene Interval_7029 chr1 122644356 122645441 + 0 NA Intergenic Intergenic 91725 ENSMUSG00000089190.1 ENSMUSG00000089190 ENSMUST00000158565 Gm25771 snoRNA Interval_53426 chr14 57362479 57363954 + 0 NA promoter-TSS (ENSMUSG00000114321.1) processed_pseudogene-promoter-TSS (ENSMUSG00000114321.1) -169 ENSMUSG00000114321.1 ENSMUSG00000114321 ENSMUST00000223673 Gm8971 processed_pseudogene Interval_27890 chr11 70653372 70656350 + 0 NA promoter-TSS (ENSMUSG00000018293.4) protein_coding-promoter-TSS (ENSMUSG00000018293.4) -240 ENSMUSG00000018293.4 ENSMUSG00000018293 ENSMUST00000108549 Pfn1 protein_coding Interval_46420 chr13 65096125 65096611 + 0 NA intron (ENSMUSG00000038212.16, intron 1 of 11) protein_coding-intron (ENSMUSG00000038212.16, intron 2 of 12) 16590 ENSMUSG00000038212.16 ENSMUSG00000038212 ENSMUST00000220824 Mfsd14b protein_coding Interval_114113 chr4 63525209 63525923 + 0 NA Intergenic Intergenic -19206 ENSMUSG00000039105.6 ENSMUSG00000039105 ENSMUST00000035301 Atp6v1g1 protein_coding Interval_134624 chr6 30021175 30022275 + 0 NA Intergenic Intergenic 33337 ENSMUSG00000095989.1 ENSMUSG00000095989 ENSMUST00000178068 Gm23049 miRNA Interval_16972 chr10 70218621 70218896 + 0 NA intron (ENSMUSG00000019933.7, intron 3 of 3) protein_coding-intron (ENSMUSG00000019933.7, intron 2 of 2) 14048 ENSMUSG00000019933.7 ENSMUSG00000019933 ENSMUST00000189468 Mrln protein_coding Interval_90570 chr2 31202420 31202661 + 0 NA intron (ENSMUSG00000000194.13, intron 1 of 1) protein_coding-intron (ENSMUSG00000000194.13, intron 14 of 17) 8807 ENSMUSG00000087430.1 ENSMUSG00000087430 ENSMUST00000146769 Gm13405 antisense Interval_42837 chr13 20145126 20145899 + 0 NA intron (ENSMUSG00000041112.17, intron 1 of 13) protein_coding-intron (ENSMUSG00000041112.17, intron 1 of 21) -126393 ENSMUSG00000113649.1 ENSMUSG00000113649 ENSMUST00000222367 Gm47665 TEC Interval_36561 chr12 49780758 49781491 + 0 NA Intergenic Intergenic -4349 ENSMUSG00000112605.1 ENSMUSG00000112605 ENSMUST00000220112 Gm7476 processed_pseudogene Interval_37808 chr12 72104289 72105234 + 0 NA intron (ENSMUSG00000021086.5, intron 19 of 20) protein_coding-intron (ENSMUSG00000021086.5, intron 19 of 20) 15056 ENSMUSG00000005078.16 ENSMUSG00000005078 ENSMUST00000145752 Jkamp protein_coding Interval_133598 chr6 7424298 7425419 + 0 NA Intergenic Intergenic 48891 ENSMUSG00000107517.1 ENSMUSG00000107517 ENSMUST00000203145 Gm44046 TEC Interval_9229 chr1 155247597 155248348 + 0 NA Intergenic Intergenic 16668 ENSMUSG00000103670.1 ENSMUSG00000103670 ENSMUST00000192162 Gm37622 antisense Interval_92119 chr2 53419197 53419392 + 0 NA Intergenic Intergenic -20807 ENSMUSG00000082472.1 ENSMUSG00000082472 ENSMUST00000118477 Gm13501 processed_pseudogene Interval_170532 chr9 108550107 108550993 + 0 NA intron (ENSMUSG00000006673.14, intron 6 of 9) protein_coding-intron (ENSMUSG00000006673.14, intron 7 of 10) 6336 ENSMUSG00000103970.1 ENSMUSG00000103970 ENSMUST00000192908 Gm37678 TEC Interval_155293 chr8 31008144 31008594 + 0 NA Intergenic Intergenic 4461 ENSMUSG00000109614.1 ENSMUSG00000109614 ENSMUST00000211579 Gm45252 processed_pseudogene Interval_30018 chr11 88716037 88716610 + 0 NA intron (ENSMUSG00000069769.13, intron 4 of 5) protein_coding-intron (ENSMUSG00000069769.13, intron 4 of 13) -2322 ENSMUSG00000087574.1 ENSMUSG00000087574 ENSMUST00000125967 C030037D09Rik lincRNA Interval_154827 chr8 23888966 23889327 + 0 NA intron (ENSMUSG00000037492.16, intron 4 of 7) protein_coding-intron (ENSMUSG00000037492.16, intron 3 of 6) -136381 ENSMUSG00000109158.1 ENSMUSG00000109158 ENSMUST00000209073 Gm45166 TEC Interval_159284 chr8 92775350 92775919 + 0 NA Intergenic Intergenic -58659 ENSMUSG00000078967.5 ENSMUSG00000078967 ENSMUST00000181181 Gapdh-ps16 processed_pseudogene Interval_43710 chr13 35581520 35582058 + 0 NA Intergenic Intergenic 37887 ENSMUSG00000114337.1 ENSMUSG00000114337 ENSMUST00000225154 Gm48704 lincRNA Interval_95559 chr2 112265316 112266522 + 0 NA promoter-TSS (ENSMUSG00000027130.15) protein_coding-promoter-TSS (ENSMUSG00000027130.15) -395 ENSMUSG00000096764.1 ENSMUSG00000096764 ENSMUST00000141047 Gm21985 protein_coding Interval_16654 chr10 66850249 66850823 + 0 NA Intergenic Intergenic 12939 ENSMUSG00000112379.1 ENSMUSG00000112379 ENSMUST00000218961 Gm47900 lincRNA Interval_10695 chr1 173204034 173204220 + 0 NA exon (ENSMUSG00000046643.2, exon 1 of 1) protein_coding-exon (ENSMUSG00000046643.2, exon 1 of 1) 6319 ENSMUSG00000046643.2 ENSMUSG00000046643 ENSMUST00000057548 Olfr218 protein_coding Interval_165629 chr9 50512163 50513264 + 0 NA Intergenic Intergenic -7908 ENSMUSG00000101304.1 ENSMUSG00000101304 ENSMUST00000190941 Plet1os antisense Interval_42654 chr13 17728881 17729181 + 0 NA intron (ENSMUSG00000041297.8, intron 9 of 13) protein_coding-intron (ENSMUSG00000041297.8, intron 9 of 13) 8023 ENSMUSG00000113432.1 ENSMUSG00000113432 ENSMUST00000220908 8430406P12Rik TEC Interval_47238 chr13 78944909 78946581 + 0 NA Intergenic Intergenic 9047 ENSMUSG00000114557.1 ENSMUSG00000114557 ENSMUST00000225033 Gm8345 processed_pseudogene Interval_147008 chr7 58037867 58039213 + 0 NA Intergenic Intergenic 33335 ENSMUSG00000077784.1 ENSMUSG00000077784 ENSMUST00000104596 Gm23911 snoRNA Interval_147135 chr7 63737151 63738733 + 0 NA intron (ENSMUSG00000033510.14, intron 8 of 10) protein_coding-intron (ENSMUSG00000033510.14, intron 11 of 13) -27932 ENSMUSG00000108421.1 ENSMUSG00000108421 ENSMUST00000206886 Gm44718 lincRNA Interval_3589 chr1 59790002 59790193 + 0 NA intron (ENSMUSG00000067336.6, intron 1 of 12) protein_coding-intron (ENSMUSG00000067336.6, intron 1 of 12) -11166 ENSMUSG00000104052.1 ENSMUSG00000104052 ENSMUST00000194136 Gm38125 TEC Interval_146131 chr7 44240474 44241150 + 0 NA TTS (ENSMUSG00000088439.1) misc_RNA-TTS (ENSMUSG00000088439.1) 1064 ENSMUSG00000088439.1 ENSMUSG00000088439 ENSMUST00000157814 Gm25386 misc_RNA Interval_66173 chr16 32123671 32125797 + 0 NA Intergenic Intergenic 15869 ENSMUSG00000086146.1 ENSMUSG00000086146 ENSMUST00000125829 Gm15729 lincRNA Interval_129840 chr5 122680405 122681919 + 0 NA promoter-TSS (ENSMUSG00000029468.17) protein_coding-promoter-TSS (ENSMUSG00000029468.17) -1435 ENSMUSG00000099324.1 ENSMUSG00000099324 ENSMUST00000184992 Mir8115 miRNA Interval_127694 chr5 106738467 106738648 + 0 NA exon (ENSMUSG00000106301.1, exon 1 of 1) processed_pseudogene-exon (ENSMUSG00000106301.1, exon 1 of 1) 207 ENSMUSG00000106301.1 ENSMUSG00000106301 ENSMUST00000197334 Gm8365 processed_pseudogene Interval_109145 chr3 136759573 136760288 + 0 NA promoter-TSS (ENSMUSG00000105545.1) TEC-promoter-TSS (ENSMUSG00000105545.1) 30 ENSMUSG00000105545.1 ENSMUSG00000105545 ENSMUST00000198822 4930599N24Rik TEC Interval_23273 chr11 21096534 21097352 + 0 NA intron (ENSMUSG00000020134.13, intron 1 of 6) protein_coding-intron (ENSMUSG00000020134.13, intron 1 of 6) -2591 ENSMUSG00000084362.1 ENSMUSG00000084362 ENSMUST00000121233 2610024D14Rik processed_pseudogene Interval_71494 chr17 24140986 24142102 + 0 NA promoter-TSS (ENSMUSG00000024122.16) protein_coding-promoter-TSS (ENSMUSG00000024122.16) 5502 ENSMUSG00000117557.1 ENSMUSG00000117557 ENSMUST00000234329 Gm50070 sense_intronic Interval_172199 chrX 9041692 9042046 + 0 NA Intergenic Intergenic -1858 ENSMUSG00000083714.3 ENSMUSG00000083714 ENSMUST00000120058 Fthl17-ps1 unprocessed_pseudogene Interval_52635 chr14 48157161 48158007 + 0 NA intron (ENSMUSG00000021846.9, intron 1 of 2) protein_coding-intron (ENSMUSG00000021846.9, intron 1 of 5) 23360 ENSMUSG00000115686.1 ENSMUSG00000115686 ENSMUST00000228432 Gm49310 TEC Interval_139692 chr6 107138230 107138520 + 0 NA Intergenic Intergenic -44260 ENSMUSG00000107981.1 ENSMUSG00000107981 ENSMUST00000203999 Gm6064 processed_pseudogene Interval_101992 chr3 14600837 14601429 + 0 NA intron (ENSMUSG00000027552.14, intron 4 of 7) protein_coding-intron (ENSMUSG00000027552.14, intron 4 of 7) 10110 ENSMUSG00000078784.8 ENSMUSG00000078784 ENSMUST00000190064 Rbis protein_coding Interval_57520 chr15 12036839 12040021 + 0 NA Intergenic Intergenic -6503 ENSMUSG00000107344.1 ENSMUSG00000107344 ENSMUST00000201323 Gm2559 processed_pseudogene Interval_73549 chr17 40278307 40279669 + 0 NA Intergenic Intergenic -36700 ENSMUSG00000025433.7 ENSMUSG00000025433 ENSMUST00000026499 Crisp3 protein_coding Interval_70246 chr17 7217493 7219428 + 0 NA intron (ENSMUSG00000023809.10, intron 1 of 20) protein_coding-intron (ENSMUSG00000023809.10, intron 1 of 20) 48333 ENSMUSG00000023809.10 ENSMUSG00000023809 ENSMUST00000231530 Rps6ka2 protein_coding Interval_134439 chr6 28723405 28724819 + 0 NA intron (ENSMUSG00000001424.14, intron 4 of 4) protein_coding-intron (ENSMUSG00000001424.14, intron 13 of 23) -72351 ENSMUSG00000103899.1 ENSMUSG00000103899 ENSMUST00000194243 Gm37940 TEC Interval_28276 chr11 74843458 74844168 + 0 NA TTS (ENSMUSG00000000282.12) protein_coding-TTS (ENSMUSG00000000282.12) 7487 ENSMUSG00000000282.12 ENSMUSG00000000282 ENSMUST00000132150 Mnt protein_coding Interval_99504 chr2 162771988 162772481 + 0 NA Intergenic Intergenic 14925 ENSMUSG00000077143.1 ENSMUSG00000077143 ENSMUST00000103955 Gm22936 snoRNA Interval_88825 chr2 11480424 11480775 + 0 NA TTS (ENSMUSG00000026773.19) protein_coding-TTS (ENSMUSG00000026773.19) -41107 ENSMUSG00000102329.1 ENSMUSG00000102329 ENSMUST00000192087 Gm10851 antisense Interval_103330 chr3 38853569 38854318 + 0 NA Intergenic Intergenic 34316 ENSMUSG00000086181.1 ENSMUSG00000086181 ENSMUST00000153659 C230034O21Rik antisense Interval_1489 chr1 24092440 24093292 + 0 NA intron (ENSMUSG00000026153.15, intron 1 of 20) protein_coding-intron (ENSMUSG00000026153.15, intron 1 of 20) -6340 ENSMUSG00000026153.15 ENSMUSG00000026153 ENSMUST00000185525 Fam135a protein_coding Interval_120336 chr4 147969042 147969601 + 0 NA Intergenic Intergenic -16467 ENSMUSG00000029019.8 ENSMUSG00000029019 ENSMUST00000103231 Nppb protein_coding Interval_90408 chr2 30261025 30261301 + 0 NA intron (ENSMUSG00000099041.1, intron 2 of 12) protein_coding-intron (ENSMUSG00000007476.18, intron 3 of 3) -18515 ENSMUSG00000079484.12 ENSMUSG00000079484 ENSMUST00000154988 Phyhd1 protein_coding Interval_140477 chr6 118593083 118594340 + 0 NA TTS (ENSMUSG00000051331.16) protein_coding-TTS (ENSMUSG00000051331.16) 25513 ENSMUSG00000100867.1 ENSMUSG00000100867 ENSMUST00000185373 Gm18981 processed_pseudogene Interval_138787 chr6 91852178 91852962 + 0 NA Intergenic Intergenic 25415 ENSMUSG00000108310.1 ENSMUSG00000108310 ENSMUST00000206250 Gm44712 TEC Interval_93153 chr2 70660888 70662280 + 0 NA promoter-TSS (ENSMUSG00000014959.12) protein_coding-promoter-TSS (ENSMUSG00000014959.12) 525 ENSMUSG00000097025.2 ENSMUSG00000097025 ENSMUST00000180559 Gm26558 antisense Interval_59497 chr15 54612787 54613056 + 0 NA Intergenic Intergenic 41729 ENSMUSG00000024479.3 ENSMUSG00000024479 ENSMUST00000025356 Mal2 protein_coding Interval_147574 chr7 68373969 68374664 + 0 NA Intergenic Intergenic -10463 ENSMUSG00000109458.1 ENSMUSG00000109458 ENSMUST00000207674 Gm44889 lincRNA Interval_55566 chr14 92704982 92705222 + 0 NA Intergenic Intergenic 31004 ENSMUSG00000115660.1 ENSMUSG00000115660 ENSMUST00000226950 Gm48962 processed_pseudogene Interval_88493 chr2 5608027 5608541 + 0 NA intron (ENSMUSG00000039145.16, intron 1 of 1) protein_coding-intron (ENSMUSG00000039145.16, intron 1 of 10) 4713 ENSMUSG00000082013.1 ENSMUSG00000082013 ENSMUST00000117145 Gm13216 processed_pseudogene Interval_133599 chr6 7441513 7442948 + 0 NA Intergenic Intergenic 66263 ENSMUSG00000107517.1 ENSMUSG00000107517 ENSMUST00000203145 Gm44046 TEC Interval_86907 chr19 44754825 44757684 + 0 NA exon (ENSMUSG00000004231.15, exon 1 of 10) protein_coding-exon (ENSMUSG00000004231.15, exon 1 of 10) 209 ENSMUSG00000004231.15 ENSMUSG00000004231 ENSMUST00000173346 Pax2 protein_coding Interval_49209 chr13 109478858 109479053 + 0 NA intron (ENSMUSG00000021699.17, intron 1 of 14) protein_coding-intron (ENSMUSG00000021699.17, intron 1 of 14) 154211 ENSMUSG00000076946.2 ENSMUSG00000076946 ENSMUST00000103758 Mir582 miRNA Interval_3958 chr1 65080463 65080978 + 0 NA intron (ENSMUSG00000073658.4, intron 2 of 2) protein_coding-intron (ENSMUSG00000073658.4, intron 2 of 2) 1568 ENSMUSG00000073658.4 ENSMUSG00000073658 ENSMUST00000027090 Crygb protein_coding Interval_123450 chr5 32635914 32636211 + 0 NA intron (ENSMUSG00000014932.15, intron 1 of 11) protein_coding-intron (ENSMUSG00000014932.15, intron 1 of 11) 6220 ENSMUSG00000107018.1 ENSMUSG00000107018 ENSMUST00000200773 Gm43694 TEC Interval_6609 chr1 118284141 118284489 + 0 NA Intergenic Intergenic 27147 ENSMUSG00000026374.14 ENSMUSG00000026374 ENSMUST00000186163 Tsn protein_coding Interval_127651 chr5 106264308 106264680 + 0 NA Intergenic Intergenic -7716 ENSMUSG00000106669.1 ENSMUSG00000106669 ENSMUST00000196978 Gm38433 processed_pseudogene Interval_109687 chr3 146001225 146002226 + 0 NA exon (ENSMUSG00000036863.12, exon 3 of 7) protein_coding-exon (ENSMUSG00000036863.12, exon 3 of 7) 13588 ENSMUSG00000036863.12 ENSMUSG00000036863 ENSMUST00000195918 Syde2 protein_coding Interval_2880 chr1 47307076 47307413 + 0 NA Intergenic Intergenic 59128 ENSMUSG00000081185.1 ENSMUSG00000081185 ENSMUST00000121202 Gm4852 processed_pseudogene Interval_33037 chr11 113802341 113803856 + 0 NA intron (ENSMUSG00000041592.16, intron 3 of 4) protein_coding-intron (ENSMUSG00000041592.16, intron 39 of 44) 7325 ENSMUSG00000041592.16 ENSMUSG00000041592 ENSMUST00000144301 Sdk2 protein_coding Interval_19433 chr10 99207208 99207873 + 0 NA Intergenic Intergenic 21366 ENSMUSG00000112805.1 ENSMUSG00000112805 ENSMUST00000219433 Gm34574 lincRNA Interval_154087 chr8 12575633 12576204 + 0 NA intron (ENSMUSG00000010435.7, intron 1 of 5) protein_coding-intron (ENSMUSG00000010435.7, intron 1 of 6) -2598 ENSMUSG00000097421.2 ENSMUSG00000097421 ENSMUST00000180858 D630011A20Rik bidirectional_promoter_lncRNA Interval_83015 chr18 80404643 80405338 + 0 NA Intergenic Intergenic 35869 ENSMUSG00000033323.14 ENSMUSG00000033323 ENSMUST00000161003 Ctdp1 protein_coding Interval_29031 chr11 79992158 79993995 + 0 NA promoter-TSS (ENSMUSG00000017548.15) protein_coding-promoter-TSS (ENSMUSG00000017548.15) -30 ENSMUSG00000017548.15 ENSMUSG00000017548 ENSMUST00000144188 Suz12 protein_coding Interval_149979 chr7 104170147 104170361 + 0 NA Intergenic Intergenic -1912 ENSMUSG00000083513.2 ENSMUSG00000083513 ENSMUST00000121599 Olfr647-ps1 unprocessed_pseudogene Interval_169162 chr9 94727639 94728111 + 0 NA intron (ENSMUSG00000031129.9, intron 4 of 15) protein_coding-intron (ENSMUSG00000031129.9, intron 4 of 15) -23954 ENSMUSG00000098251.1 ENSMUSG00000098251 ENSMUST00000183864 Mir7656 miRNA Interval_78205 chr18 10110666 10111048 + 0 NA exon (ENSMUSG00000024290.9, exon 1 of 1) protein_coding-exon (ENSMUSG00000024290.9, exon 1 of 1) 1521 ENSMUSG00000024290.9 ENSMUSG00000024290 ENSMUST00000235075 Rock1 protein_coding Interval_104587 chr3 68557406 68558373 + 0 NA intron (ENSMUSG00000027777.15, intron 2 of 5) protein_coding-intron (ENSMUSG00000027777.15, intron 2 of 7) -10181 ENSMUSG00000084617.1 ENSMUSG00000084617 ENSMUST00000122668 Gm22073 snRNA Interval_151501 chr7 123115590 123115909 + 0 NA intron (ENSMUSG00000110230.1, intron 2 of 2) lincRNA-intron (ENSMUSG00000110230.1, intron 2 of 2) -55897 ENSMUSG00000052707.8 ENSMUSG00000052707 ENSMUST00000206126 Tnrc6a protein_coding Interval_1367 chr1 21014648 21015036 + 0 NA intron (ENSMUSG00000041779.5, intron 2 of 7) protein_coding-intron (ENSMUSG00000041779.5, intron 2 of 10) 28814 ENSMUSG00000041779.5 ENSMUSG00000041779 ENSMUST00000187210 Tram2 protein_coding Interval_61442 chr15 81652168 81652652 + 0 NA TTS (ENSMUSG00000055024.12) protein_coding-TTS (ENSMUSG00000055024.12) 3989 ENSMUSG00000116516.1 ENSMUSG00000116516 ENSMUST00000230244 Gm49444 processed_pseudogene Interval_28961 chr11 79583986 79584739 + 0 NA Intergenic Intergenic -10803 ENSMUSG00000064486.1 ENSMUSG00000064486 ENSMUST00000082552 Gm23293 snRNA Interval_57046 chr15 5105971 5106726 + 0 NA intron (ENSMUSG00000041849.7, intron 1 of 1) protein_coding-intron (ENSMUSG00000041849.7, intron 2 of 3) 2136 ENSMUSG00000041849.7 ENSMUSG00000041849 ENSMUST00000141020 Card6 protein_coding Interval_87990 chr19 57616599 57617148 + 0 NA intron (ENSMUSG00000054843.9, intron 1 of 28) protein_coding-intron (ENSMUSG00000054843.9, intron 1 of 28) 5839 ENSMUSG00000054843.9 ENSMUSG00000054843 ENSMUST00000077282 Atrnl1 protein_coding Interval_55180 chr14 79097216 79098157 + 0 NA intron (ENSMUSG00000058997.8, intron 34 of 44) protein_coding-intron (ENSMUSG00000058997.8, intron 34 of 44) -8023 ENSMUSG00000115643.1 ENSMUSG00000115643 ENSMUST00000227294 Gm49011 processed_pseudogene Interval_54805 chr14 75263947 75264481 + 0 NA promoter-TSS (ENSMUSG00000115789.1) processed_pseudogene-promoter-TSS (ENSMUSG00000115789.1) -3 ENSMUSG00000115789.1 ENSMUSG00000115789 ENSMUST00000226248 Gm18147 processed_pseudogene Interval_165233 chr9 45601151 45601517 + 0 NA intron (ENSMUSG00000032087.11, intron 3 of 32) protein_coding-intron (ENSMUSG00000032087.11, intron 3 of 32) 33478 ENSMUSG00000096202.1 ENSMUSG00000096202 ENSMUST00000179911 Gm22069 snRNA Interval_58804 chr15 38162857 38163327 + 0 NA Intergenic Intergenic 39125 ENSMUSG00000115680.1 ENSMUSG00000115680 ENSMUST00000227576 Gm35167 lincRNA Interval_56486 chr14 119098856 119100200 + 0 NA promoter-TSS (ENSMUSG00000042104.18) protein_coding-promoter-TSS (ENSMUSG00000042104.18) 563 ENSMUSG00000087479.1 ENSMUSG00000087479 ENSMUST00000140488 Gm16835 processed_transcript Interval_80136 chr18 37784511 37785589 + 0 NA intron (ENSMUSG00000102428.1, intron 1 of 3) protein_coding-intron (ENSMUSG00000103088.1, intron 1 of 3) 19277 ENSMUSG00000102428.1 ENSMUSG00000102428 ENSMUST00000193045 Pcdhga12 protein_coding Interval_167205 chr9 66152050 66153135 + 0 NA Intergenic Intergenic -5634 ENSMUSG00000032380.9 ENSMUSG00000032380 ENSMUST00000129778 Dapk2 protein_coding Interval_13593 chr10 20032227 20032621 + 0 NA intron (ENSMUSG00000071369.11, intron 6 of 28) protein_coding-intron (ENSMUSG00000071369.11, intron 7 of 29) -92377 ENSMUSG00000071369.11 ENSMUSG00000071369 ENSMUST00000156369 Map3k5 protein_coding Interval_67688 chr16 55965673 55967539 + 0 NA promoter-TSS (ENSMUSG00000098274.7) protein_coding-promoter-TSS (ENSMUSG00000098274.7) 185 ENSMUSG00000098274.7 ENSMUSG00000098274 ENSMUST00000128581 Rpl24 protein_coding Interval_26519 chr11 58341440 58342051 + 0 NA intron (ENSMUSG00000013646.17, intron 3 of 4) protein_coding-intron (ENSMUSG00000013646.17, intron 5 of 6) 10470 ENSMUSG00000013646.17 ENSMUSG00000013646 ENSMUST00000127119 Sh3bp5l protein_coding Interval_124622 chr5 52509286 52509771 + 0 NA Intergenic Intergenic -29303 ENSMUSG00000104829.1 ENSMUSG00000104829 ENSMUST00000198876 Gm43685 antisense Interval_35 GL456211.1 191494 191787 + 0 NA NA NA NA NA Interval_121968 chr5 12722054 12722558 + 0 NA Intergenic Intergenic -51578 ENSMUSG00000105237.1 ENSMUSG00000105237 ENSMUST00000197223 Gm42580 processed_pseudogene Interval_125097 chr5 64430211 64432362 + 0 NA Intergenic Intergenic -2669 ENSMUSG00000105105.1 ENSMUSG00000105105 ENSMUST00000199362 Gm31363 lincRNA Interval_66314 chr16 33078433 33079815 + 0 NA intron (ENSMUSG00000022802.2, intron 6 of 16) protein_coding-intron (ENSMUSG00000022802.2, intron 6 of 16) 11014 ENSMUSG00000077844.1 ENSMUSG00000077844 ENSMUST00000101027 Gm22231 miRNA Interval_156737 chr8 57741250 57742150 + 0 NA Intergenic Intergenic 41926 ENSMUSG00000110162.1 ENSMUSG00000110162 ENSMUST00000209274 Gm45356 lincRNA Interval_18175 chr10 83321657 83322889 + 0 NA intron (ENSMUSG00000034591.5, intron 1 of 10) protein_coding-intron (ENSMUSG00000034591.5, intron 1 of 10) 610 ENSMUSG00000034591.5 ENSMUSG00000034591 ENSMUST00000154730 Slc41a2 protein_coding Interval_7321 chr1 128875328 128875629 + 0 NA Intergenic Intergenic 10541 ENSMUSG00000064737.1 ENSMUSG00000064737 ENSMUST00000082803 Gm23056 snRNA Interval_16338 chr10 62326727 62327734 + 0 NA intron (ENSMUSG00000037012.18, intron 5 of 5) protein_coding-intron (ENSMUSG00000037012.18, intron 2 of 19) -13377 ENSMUSG00000085347.1 ENSMUSG00000085347 ENSMUST00000142968 Hk1os antisense Interval_76373 chr17 79699140 79699493 + 0 NA Intergenic Intergenic 14339 ENSMUSG00000024087.4 ENSMUSG00000024087 ENSMUST00000024894 Cyp1b1 protein_coding Interval_130740 chr5 130065469 130066402 + 0 NA Intergenic Intergenic -27654 ENSMUSG00000034118.15 ENSMUSG00000034118 ENSMUST00000128335 Tpst1 protein_coding Interval_22292 chr11 8575028 8576813 + 0 NA intron (ENSMUSG00000020422.14, intron 4 of 30) protein_coding-intron (ENSMUSG00000020422.14, intron 4 of 30) 88761 ENSMUSG00000020422.14 ENSMUSG00000020422 ENSMUST00000134823 Tns3 protein_coding Interval_13535 chr10 19297647 19297883 + 0 NA intron (ENSMUSG00000110917.1, intron 3 of 4) lincRNA-intron (ENSMUSG00000110917.1, intron 3 of 4) 6776 ENSMUSG00000110917.1 ENSMUSG00000110917 ENSMUST00000213234 Gm33056 lincRNA Interval_130748 chr5 130126568 130127201 + 0 NA intron (ENSMUSG00000034118.15, intron 3 of 5) protein_coding-intron (ENSMUSG00000034118.15, intron 3 of 5) -4443 ENSMUSG00000107216.1 ENSMUSG00000107216 ENSMUST00000201281 2210412B16Rik TEC Interval_87684 chr19 54584041 54585554 + 0 NA Intergenic Intergenic 139817 ENSMUSG00000117755.1 ENSMUSG00000117755 ENSMUST00000236789 Gm50188 processed_pseudogene Interval_145895 chr7 41523105 41523912 + 0 NA Intergenic Intergenic -24091 ENSMUSG00000092592.1 ENSMUSG00000092592 ENSMUST00000094532 Gm20449 protein_coding Interval_48489 chr13 99395638 99395938 + 0 NA intron (ENSMUSG00000041632.7, intron 4 of 5) protein_coding-intron (ENSMUSG00000041632.7, intron 4 of 10) 16876 ENSMUSG00000097828.2 ENSMUSG00000097828 ENSMUST00000225937 6430562O15Rik processed_transcript Interval_156720 chr8 57579854 57580570 + 0 NA intron (ENSMUSG00000031608.13, intron 2 of 5) protein_coding-intron (ENSMUSG00000031608.13, intron 2 of 11) 26944 ENSMUSG00000110405.1 ENSMUSG00000110405 ENSMUST00000211449 Gm45534 TEC Interval_35837 chr12 31089926 31090620 + 0 NA promoter-TSS (ENSMUSG00000112876.1) lincRNA-promoter-TSS (ENSMUSG00000112876.1) -803 ENSMUSG00000112876.1 ENSMUSG00000112876 ENSMUST00000217880 Gm32443 lincRNA Interval_77504 chr17 90394333 90395017 + 0 NA intron (ENSMUSG00000024109.18, intron 3 of 3) protein_coding-intron (ENSMUSG00000024109.18, intron 15 of 20) -60214 ENSMUSG00000073367.5 ENSMUSG00000073367 ENSMUST00000097270 Gm10493 processed_pseudogene Interval_1227 chr1 17496290 17496691 + 0 NA Intergenic Intergenic -23511 ENSMUSG00000089534.1 ENSMUSG00000089534 ENSMUST00000158909 Gm25166 snoRNA Interval_9279 chr1 155792008 155792341 + 0 NA intron (ENSMUSG00000033684.14, intron 5 of 12) protein_coding-intron (ENSMUSG00000033684.14, intron 5 of 11) 3050 ENSMUSG00000102299.1 ENSMUSG00000102299 ENSMUST00000192644 Gm37539 TEC Interval_72227 chr17 28698122 28698587 + 0 NA intron (ENSMUSG00000053436.15, intron 2 of 12) protein_coding-intron (ENSMUSG00000053436.15, intron 1 of 11) 6909 ENSMUSG00000053436.15 ENSMUSG00000053436 ENSMUST00000151613 Mapk14 protein_coding Interval_129259 chr5 118492399 118493009 + 0 NA intron (ENSMUSG00000082365.2, intron 1 of 1) transcribed_processed_pseudogene-intron (ENSMUSG00000082365.2, intron 1 of 1) 5737 ENSMUSG00000082365.2 ENSMUSG00000082365 ENSMUST00000119191 Gm15754 transcribed_processed_pseudogene Interval_31622 chr11 101784369 101788034 + 0 NA promoter-TSS (ENSMUSG00000017724.14) protein_coding-promoter-TSS (ENSMUSG00000017724.14) -891 ENSMUSG00000017724.14 ENSMUSG00000017724 ENSMUST00000154512 Etv4 protein_coding Interval_138904 chr6 93347677 93347939 + 0 NA Intergenic Intergenic -12220 ENSMUSG00000077180.1 ENSMUSG00000077180 ENSMUST00000103992 Gm25094 snoRNA Interval_72069 chr17 27825905 27827746 + 0 NA Intergenic Intergenic -6259 ENSMUSG00000056692.13 ENSMUSG00000056692 ENSMUST00000233035 Ilrun protein_coding Interval_114789 chr4 85282746 85283939 + 0 NA intron (ENSMUSG00000028488.15, intron 1 of 7) protein_coding-intron (ENSMUSG00000028488.15, intron 1 of 8) -37580 ENSMUSG00000081862.1 ENSMUSG00000081862 ENSMUST00000121508 Gm12413 processed_pseudogene Interval_47531 chr13 86521949 86522146 + 0 NA Intergenic Intergenic 203885 ENSMUSG00000095933.1 ENSMUSG00000095933 ENSMUST00000177693 Gm25700 miRNA Interval_24557 chr11 34425798 34426067 + 0 NA intron (ENSMUSG00000020143.15, intron 7 of 8) protein_coding-intron (ENSMUSG00000020143.15, intron 27 of 51) 111174 ENSMUSG00000069911.11 ENSMUSG00000069911 ENSMUST00000093192 Insyn2b protein_coding Interval_136386 chr6 54021496 54021771 + 0 NA Intergenic Intergenic 42904 ENSMUSG00000108060.2 ENSMUSG00000108060 ENSMUST00000203047 4921529L05Rik processed_transcript Interval_70932 chr17 16212268 16212508 + 0 NA Intergenic Intergenic -48824 ENSMUSG00000116899.1 ENSMUSG00000116899 ENSMUST00000231616 Gm49777 processed_pseudogene Interval_159951 chr8 105367260 105367547 + 0 NA intron (ENSMUSG00000014786.8, intron 10 of 10) protein_coding-intron (ENSMUSG00000014786.8, intron 15 of 15) -6416 ENSMUSG00000014782.16 ENSMUSG00000014782 ENSMUST00000161672 Plekhg4 protein_coding Interval_156691 chr8 57340269 57342035 + 0 NA TTS (ENSMUSG00000097910.2) lincRNA-TTS (ENSMUSG00000097910.2) 352 ENSMUSG00000097910.2 ENSMUSG00000097910 ENSMUST00000210633 5033428I22Rik lincRNA Interval_147670 chr7 71458496 71458795 + 0 NA Intergenic Intergenic 107194 ENSMUSG00000099558.1 ENSMUSG00000099558 ENSMUST00000190004 Gm29295 lincRNA Interval_48679 chr13 101101317 101101685 + 0 NA Intergenic Intergenic -62255 ENSMUSG00000096722.2 ENSMUSG00000096722 ENSMUST00000179479 Hmgb1-ps9 processed_pseudogene Interval_9641 chr1 160651334 160652067 + 0 NA intron (ENSMUSG00000026721.16, intron 11 of 20) protein_coding-intron (ENSMUSG00000026721.16, intron 11 of 20) -1398 ENSMUSG00000102172.1 ENSMUSG00000102172 ENSMUST00000194571 Gm37873 TEC Interval_173887 chrX 107057052 107057681 + 0 NA Intergenic Intergenic -31126 ENSMUSG00000050921.12 ENSMUSG00000050921 ENSMUST00000053375 P2ry10 protein_coding Interval_17113 chr10 71411996 71412430 + 0 NA intron (ENSMUSG00000060733.13, intron 1 of 1) protein_coding-intron (ENSMUSG00000060733.13, intron 2 of 2) 64377 ENSMUSG00000060733.13 ENSMUSG00000060733 ENSMUST00000145521 Ipmk protein_coding Interval_42070 chr13 7523976 7525019 + 0 NA Intergenic Intergenic 77988 ENSMUSG00000113225.1 ENSMUSG00000113225 ENSMUST00000221383 Gm36074 lincRNA Interval_24732 chr11 36342316 36343015 + 0 NA intron (ENSMUSG00000049336.16, intron 3 of 28) protein_coding-intron (ENSMUSG00000049336.16, intron 3 of 28) 64624 ENSMUSG00000086375.1 ENSMUSG00000086375 ENSMUST00000123278 Gm12127 antisense Interval_103665 chr3 51470497 51470771 + 0 NA exon (ENSMUSG00000063273.11, exon 1 of 1) protein_coding-exon (ENSMUSG00000063273.11, exon 1 of 1) -13286 ENSMUSG00000027739.9 ENSMUSG00000027739 ENSMUST00000054387 Rab33b protein_coding Interval_140222 chr6 115659765 115660933 + 0 NA intron (ENSMUSG00000000441.17, intron 1 of 6) protein_coding-intron (ENSMUSG00000000441.17, intron 1 of 16) -15619 ENSMUSG00000107994.1 ENSMUSG00000107994 ENSMUST00000203121 D830050J10Rik bidirectional_promoter_lncRNA Interval_84051 chr19 6969523 6970745 + 0 NA promoter-TSS (ENSMUSG00000024960.9) protein_coding-promoter-TSS (ENSMUSG00000024960.9) -5181 ENSMUSG00000056612.7 ENSMUSG00000056612 ENSMUST00000235195 Ppp1r14b protein_coding Interval_111101 chr4 12081181 12082441 + 0 NA intron (ENSMUSG00000049488.14, intron 2 of 2) protein_coding-intron (ENSMUSG00000049488.14, intron 2 of 27) 6121 ENSMUSG00000049488.14 ENSMUSG00000049488 ENSMUST00000151859 Tmem67 protein_coding Interval_158923 chr8 87982117 87985293 + 0 NA Intergenic Intergenic -29843 ENSMUSG00000045333.15 ENSMUSG00000045333 ENSMUST00000173092 Zfp423 protein_coding Interval_59020 chr15 41779075 41779303 + 0 NA intron (ENSMUSG00000097232.1, intron 1 of 3) protein_coding-intron (ENSMUSG00000022307.16, intron 3 of 15) 9722 ENSMUSG00000097232.1 ENSMUSG00000097232 ENSMUST00000180418 Gm26854 antisense Interval_20540 chr10 118719468 118719758 + 0 NA promoter-TSS (ENSMUSG00000112535.1) lincRNA-promoter-TSS (ENSMUSG00000112535.1) -185 ENSMUSG00000112535.1 ENSMUSG00000112535 ENSMUST00000219645 Gm47425 lincRNA Interval_60022 chr15 64032720 64034408 + 0 NA intron (ENSMUSG00000022378.14, intron 1 of 12) protein_coding-intron (ENSMUSG00000022378.14, intron 1 of 11) 7616 ENSMUSG00000065936.1 ENSMUSG00000065936 ENSMUST00000084002 Gm25628 snRNA Interval_170236 chr9 106379004 106379272 + 0 NA Intergenic Intergenic 4519 ENSMUSG00000053716.9 ENSMUSG00000053716 ENSMUST00000193878 Dusp7 protein_coding Interval_91928 chr2 51621117 51621741 + 0 NA Intergenic Intergenic -6082 ENSMUSG00000056115.2 ENSMUSG00000056115 ENSMUST00000070028 Tas2r134 protein_coding Interval_122046 chr5 14575427 14576025 + 0 NA intron (ENSMUSG00000061601.15, intron 3 of 22) protein_coding-intron (ENSMUSG00000061601.15, intron 3 of 24) 12388 ENSMUSG00000106491.1 ENSMUSG00000106491 ENSMUST00000199783 Gm42446 TEC Interval_66156 chr16 32002650 32003709 + 0 NA promoter-TSS (ENSMUSG00000022772.12) protein_coding-promoter-TSS (ENSMUSG00000022772.12) 108 ENSMUSG00000022772.12 ENSMUSG00000022772 ENSMUST00000144320 Senp5 protein_coding Interval_124616 chr5 52411518 52411830 + 0 NA intron (ENSMUSG00000045790.10, intron 4 of 11) protein_coding-intron (ENSMUSG00000045790.10, intron 4 of 11) -6552 ENSMUSG00000045790.10 ENSMUSG00000045790 ENSMUST00000213027 Ccdc149 protein_coding Interval_77928 chr18 5646745 5647549 + 0 NA intron (ENSMUSG00000024238.15, intron 2 of 5) protein_coding-intron (ENSMUSG00000024238.15, intron 1 of 7) 32674 ENSMUSG00000080543.1 ENSMUSG00000080543 ENSMUST00000116893 Gm22709 miRNA Interval_140766 chr6 121140701 121141589 + 0 NA Intergenic Intergenic 24347 ENSMUSG00000108096.1 ENSMUSG00000108096 ENSMUST00000203344 Minpp1-ps processed_pseudogene Interval_26798 chr11 60553674 60554063 + 0 NA exon (ENSMUSG00000042650.3, exon 3 of 4) protein_coding-exon (ENSMUSG00000042650.3, exon 3 of 4) 7437 ENSMUSG00000096745.1 ENSMUSG00000096745 ENSMUST00000177975 Gm12622 processed_pseudogene Interval_45210 chr13 53204815 53205865 + 0 NA intron (ENSMUSG00000021464.14, intron 1 of 8) protein_coding-intron (ENSMUSG00000021464.14, intron 1 of 8) 70318 ENSMUSG00000021464.14 ENSMUSG00000021464 ENSMUST00000149299 Ror2 protein_coding Interval_153166 chr7 142008713 142009761 + 0 NA TTS (ENSMUSG00000025147.7) protein_coding-TTS (ENSMUSG00000025147.7) 7796 ENSMUSG00000053046.16 ENSMUSG00000053046 ENSMUST00000210065 Brsk2 protein_coding Interval_77204 chr17 87336893 87337619 + 0 NA intron (ENSMUSG00000036918.16, intron 10 of 18) protein_coding-intron (ENSMUSG00000036918.16, intron 11 of 19) -5204 ENSMUSG00000089701.1 ENSMUSG00000089701 ENSMUST00000161043 Gm15978 antisense Interval_6630 chr1 118409829 118410029 + 0 NA intron (ENSMUSG00000064302.13, intron 1 of 38) protein_coding-intron (ENSMUSG00000064302.13, intron 1 of 39) 43556 ENSMUSG00000077257.1 ENSMUSG00000077257 ENSMUST00000104069 Gm26080 snoRNA Interval_140044 chr6 113616767 113618894 + 0 NA TTS (ENSMUSG00000033940.8) protein_coding-TTS (ENSMUSG00000033940.8) -5385 ENSMUSG00000107560.1 ENSMUSG00000107560 ENSMUST00000205219 Gm44199 antisense Interval_149440 chr7 98544678 98545129 + 0 NA intron (ENSMUSG00000055446.5, intron 1 of 1) lincRNA-intron (ENSMUSG00000055446.5, intron 1 of 1) 18087 ENSMUSG00000055446.5 ENSMUSG00000055446 ENSMUST00000069035 A630091E08Rik lincRNA Interval_51380 chr14 27108702 27109329 + 0 NA Intergenic Intergenic -5884 ENSMUSG00000021895.10 ENSMUSG00000021895 ENSMUST00000225494 Arhgef3 protein_coding Interval_86966 chr19 45244075 45244873 + 0 NA Intergenic Intergenic -8662 ENSMUSG00000025216.9 ENSMUSG00000025216 ENSMUST00000099401 Lbx1 protein_coding Interval_115187 chr4 93889354 93889603 + 0 NA Intergenic Intergenic 87145 ENSMUSG00000073797.5 ENSMUSG00000073797 ENSMUST00000121966 Gm12650 processed_pseudogene Interval_74073 chr17 46431319 46431506 + 0 NA TTS (ENSMUSG00000067144.7) protein_coding-TTS (ENSMUSG00000067144.7) 737 ENSMUSG00000023968.15 ENSMUSG00000023968 ENSMUST00000165750 Crip3 protein_coding Interval_93818 chr2 77191433 77191698 + 0 NA intron (ENSMUSG00000042272.17, intron 15 of 17) protein_coding-intron (ENSMUSG00000042272.17, intron 15 of 17) 7862 ENSMUSG00000042272.17 ENSMUSG00000042272 ENSMUST00000139021 Sestd1 protein_coding Interval_9595 chr1 160061666 160062432 + 0 NA intron (ENSMUSG00000090394.8, intron 2 of 3) protein_coding-intron (ENSMUSG00000090394.8, intron 1 of 2) 15893 ENSMUSG00000026729.9 ENSMUSG00000026729 ENSMUST00000169600 4930562F07Rik lincRNA Interval_78266 chr18 11048404 11048608 + 0 NA promoter-TSS (ENSMUSG00000097222.2) processed_transcript-promoter-TSS (ENSMUSG00000097222.2) -869 ENSMUSG00000097222.2 ENSMUSG00000097222 ENSMUST00000181316 Gata6os processed_transcript Interval_140317 chr6 116422981 116423884 + 0 NA intron (ENSMUSG00000025701.12, intron 5 of 11) protein_coding-intron (ENSMUSG00000025701.12, intron 5 of 13) 33970 ENSMUSG00000107556.1 ENSMUSG00000107556 ENSMUST00000205183 Gm44237 TEC Interval_159982 chr8 105574250 105575139 + 0 NA intron (ENSMUSG00000005705.10, intron 2 of 5) antisense-intron (ENSMUSG00000104168.1, intron 1 of 1) 5151 ENSMUSG00000005705.10 ENSMUSG00000005705 ENSMUST00000194654 Agrp protein_coding Interval_162527 chr9 3887781 3888510 + 0 NA intron (ENSMUSG00000041624.10, intron 7 of 7) protein_coding-intron (ENSMUSG00000041624.10, intron 7 of 7) -325777 ENSMUSG00000110691.1 ENSMUSG00000110691 ENSMUST00000211927 Gm5363 processed_pseudogene Interval_161098 chr8 117452920 117453802 + 0 NA TTS (ENSMUSG00000099062.1) miRNA-TTS (ENSMUSG00000099062.1) 338 ENSMUSG00000099062.1 ENSMUSG00000099062 ENSMUST00000183991 Mir7077 miRNA Interval_76718 chr17 83676935 83677769 + 0 NA Intergenic Intergenic -45457 ENSMUSG00000045053.2 ENSMUSG00000045053 ENSMUST00000051482 Kcng3 protein_coding Interval_102338 chr3 22029060 22029463 + 0 NA Intergenic Intergenic 8064 ENSMUSG00000106527.1 ENSMUSG00000106527 ENSMUST00000200422 Gm43671 processed_pseudogene Interval_11419 chr1 181841586 181842954 + 0 NA promoter-TSS (ENSMUSG00000004880.11) protein_coding-promoter-TSS (ENSMUSG00000004880.11) 589 ENSMUSG00000004880.11 ENSMUSG00000004880 ENSMUST00000193028 Lbr protein_coding Interval_151099 chr7 118547002 118547546 + 0 NA exon (ENSMUSG00000042246.5, exon 11 of 11) protein_coding-exon (ENSMUSG00000042246.5, exon 11 of 11) -13977 ENSMUSG00000030652.11 ENSMUSG00000030652 ENSMUST00000127700 Coq7 protein_coding Interval_149883 chr7 102222076 102223478 + 0 NA promoter-TSS (ENSMUSG00000030990.18) protein_coding-promoter-TSS (ENSMUSG00000030990.18) -251 ENSMUSG00000030990.18 ENSMUSG00000030990 ENSMUST00000134621 Pgap2 protein_coding Interval_100466 chr2 169215558 169215861 + 0 NA Intergenic Intergenic -19282 ENSMUSG00000085369.1 ENSMUSG00000085369 ENSMUST00000152494 9430093N23Rik lincRNA Interval_119093 chr4 135506058 135506295 + 0 NA intron (ENSMUSG00000028801.14, intron 2 of 8) protein_coding-intron (ENSMUSG00000028801.14, intron 1 of 8) 6303 ENSMUSG00000080474.1 ENSMUSG00000080474 ENSMUST00000116824 Gm25317 miRNA Interval_168649 chr9 85406572 85406939 + 0 NA Intergenic Intergenic 12403 ENSMUSG00000111663.1 ENSMUSG00000111663 ENSMUST00000216235 Gm48833 lincRNA Interval_21787 chr11 4341147 4341386 + 0 NA Intergenic Intergenic -17011 ENSMUSG00000065627.1 ENSMUSG00000065627 ENSMUST00000083693 Gm24803 snRNA Interval_117370 chr4 123299658 123302156 + 0 NA Intergenic Intergenic 6310 ENSMUSG00000118657.1 ENSMUSG00000118657 ENSMUST00000239455 AL606917.1 unprocessed_pseudogene Interval_69521 chr16 94013318 94015279 + 0 NA Intergenic Intergenic -1644 ENSMUSG00000116939.1 ENSMUSG00000116939 ENSMUST00000232441 Gm49619 processed_pseudogene Interval_15253 chr10 43827552 43827776 + 0 NA intron (ENSMUSG00000111342.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000111342.1, intron 1 of 1) 1084 ENSMUSG00000111342.1 ENSMUSG00000111342 ENSMUST00000217125 4933404K13Rik lincRNA Interval_100001 chr2 166361095 166361320 + 0 NA Intergenic Intergenic 36950 ENSMUSG00000087617.1 ENSMUSG00000087617 ENSMUST00000132465 Gm14268 lincRNA Interval_87625 chr19 53793902 53794184 + 0 NA intron (ENSMUSG00000043639.15, intron 1 of 1) protein_coding-intron (ENSMUSG00000043639.15, intron 1 of 1) -25733 ENSMUSG00000089807.1 ENSMUSG00000089807 ENSMUST00000161107 Gm16298 processed_pseudogene Interval_76439 chr17 80198346 80199920 + 0 NA TTS (ENSMUSG00000024097.11) protein_coding-TTS (ENSMUSG00000024097.11) -2729 ENSMUSG00000088453.1 ENSMUSG00000088453 ENSMUST00000157828 Gm25706 misc_RNA Interval_14473 chr10 34168478 34168978 + 0 NA intron (ENSMUSG00000039497.8, intron 2 of 2) protein_coding-intron (ENSMUSG00000039497.8, intron 2 of 5) 7517 ENSMUSG00000039497.8 ENSMUSG00000039497 ENSMUST00000216194 Dse protein_coding Interval_38313 chr12 77063960 77064439 + 0 NA Intergenic Intergenic -21998 ENSMUSG00000112030.1 ENSMUSG00000112030 ENSMUST00000219319 Gm35189 lincRNA Interval_127064 chr5 100038385 100040635 + 0 NA promoter-TSS (ENSMUSG00000029326.13) protein_coding-promoter-TSS (ENSMUSG00000029326.13) -641 ENSMUSG00000029328.15 ENSMUSG00000029328 ENSMUST00000151323 Hnrnpdl protein_coding Interval_107292 chr3 105488991 105489904 + 0 NA intron (ENSMUSG00000040896.16, intron 2 of 4) protein_coding-intron (ENSMUSG00000040896.16, intron 1 of 6) -13460 ENSMUSG00000105753.1 ENSMUSG00000105753 ENSMUST00000200070 Gm43847 sense_intronic Interval_40076 chr12 101015370 101018585 + 0 NA intron (ENSMUSG00000021182.16, intron 3 of 6) protein_coding-intron (ENSMUSG00000021182.16, intron 3 of 29) 4791 ENSMUSG00000080575.2 ENSMUSG00000080575 ENSMUST00000116925 Mir1190 miRNA Interval_172897 chrX 52987713 52988827 + 0 NA intron (ENSMUSG00000025630.8, intron 1 of 8) protein_coding-intron (ENSMUSG00000025630.8, intron 1 of 8) 133 ENSMUSG00000025630.8 ENSMUSG00000025630 ENSMUST00000026723 Hprt protein_coding Interval_143898 chr7 17015255 17015797 + 0 NA promoter-TSS (ENSMUSG00000003099.11) protein_coding-promoter-TSS (ENSMUSG00000003099.11) 12368 ENSMUSG00000003099.11 ENSMUSG00000003099 ENSMUST00000145997 Ppp5c protein_coding Interval_129228 chr5 118326786 118327318 + 0 NA Intergenic Intergenic 60603 ENSMUSG00000095477.1 ENSMUSG00000095477 ENSMUST00000104098 Gm25076 snoRNA Interval_50618 chr14 16625108 16625335 + 0 NA intron (ENSMUSG00000017491.9, intron 1 of 3) protein_coding-intron (ENSMUSG00000017491.9, intron 1 of 3) -49394 ENSMUSG00000017491.9 ENSMUSG00000017491 ENSMUST00000225245 Rarb protein_coding Interval_84228 chr19 8892678 8893407 + 0 NA promoter-TSS (ENSMUSG00000071652.8) protein_coding-promoter-TSS (ENSMUSG00000071652.8) 37 ENSMUSG00000071652.8 ENSMUSG00000071652 ENSMUST00000096249 Ints5 protein_coding Interval_16844 chr10 69165041 69165348 + 0 NA intron (ENSMUSG00000019944.14, intron 2 of 4) protein_coding-intron (ENSMUSG00000019944.14, intron 2 of 4) -14062 ENSMUSG00000111941.1 ENSMUSG00000111941 ENSMUST00000220371 Gm33263 lincRNA Interval_58709 chr15 37257727 37258204 + 0 NA intron (ENSMUSG00000022286.16, intron 1 of 9) protein_coding-intron (ENSMUSG00000022286.16, intron 1 of 15) -14803 ENSMUSG00000089949.2 ENSMUSG00000089949 ENSMUST00000161571 Gm16137 antisense Interval_167600 chr9 70935864 70936030 + 0 NA intron (ENSMUSG00000032207.10, intron 1 of 2) protein_coding-intron (ENSMUSG00000032207.10, intron 1 of 2) 5459 ENSMUSG00000111631.1 ENSMUSG00000111631 ENSMUST00000215190 Gm32017 processed_transcript Interval_168400 chr9 80049409 80049858 + 0 NA Intergenic Intergenic -5417 ENSMUSG00000111574.1 ENSMUSG00000111574 ENSMUST00000217483 Gm46146 processed_pseudogene Interval_131782 chr5 139830609 139830914 + 0 NA Intergenic Intergenic -3886 ENSMUSG00000029551.13 ENSMUSG00000029551 ENSMUST00000182743 Psmg3 protein_coding Interval_120630 chr4 149776048 149776361 + 0 NA promoter-TSS (ENSMUSG00000085368.1) lincRNA-promoter-TSS (ENSMUSG00000085368.1) -48 ENSMUSG00000085368.1 ENSMUSG00000085368 ENSMUST00000142019 Gm16188 lincRNA Interval_124369 chr5 44831225 44831653 + 0 NA Intergenic Intergenic -31820 ENSMUSG00000039706.11 ENSMUSG00000039706 ENSMUST00000198894 Ldb2 protein_coding Interval_1722 chr1 32634479 32634702 + 0 NA intron (ENSMUSG00000026058.11, intron 7 of 8) protein_coding-intron (ENSMUSG00000026058.11, intron 7 of 8) -66169 ENSMUSG00000089489.1 ENSMUSG00000089489 ENSMUST00000158864 Gm24732 snRNA Interval_2048 chr1 36103437 36104892 + 0 NA exon (ENSMUSG00000045216.7, exon 2 of 2) protein_coding-exon (ENSMUSG00000045216.7, exon 2 of 2) 2282 ENSMUSG00000104523.1 ENSMUSG00000104523 ENSMUST00000192656 Gm37335 antisense Interval_137411 chr6 71974583 71974881 + 0 NA intron (ENSMUSG00000049553.11, intron 9 of 14) protein_coding-intron (ENSMUSG00000049553.11, intron 29 of 33) -10957 ENSMUSG00000097133.1 ENSMUSG00000097133 ENSMUST00000181028 Gm26628 antisense Interval_80753 chr18 46842475 46843733 + 0 NA Intergenic Intergenic -6935 ENSMUSG00000024481.5 ENSMUSG00000024481 ENSMUST00000234519 Lvrn protein_coding Interval_14871 chr10 40662859 40663563 + 0 NA intron (ENSMUSG00000063428.8, intron 4 of 4) protein_coding-intron (ENSMUSG00000063428.8, intron 4 of 4) -20071 ENSMUSG00000045555.3 ENSMUSG00000045555 ENSMUST00000058747 Mettl24 protein_coding Interval_150950 chr7 116644719 116646148 + 0 NA Intergenic Intergenic -20191 ENSMUSG00000084492.1 ENSMUSG00000084492 ENSMUST00000122543 n-R5s157 rRNA Interval_99675 chr2 164123349 164123820 + 0 NA intron (ENSMUSG00000018209.15, intron 2 of 2) protein_coding-intron (ENSMUSG00000018209.15, intron 10 of 10) -12119 ENSMUSG00000085538.1 ENSMUSG00000085538 ENSMUST00000149285 Gm11455 antisense Interval_51659 chr14 31184796 31185249 + 0 NA promoter-TSS (ENSMUSG00000021910.15) protein_coding-promoter-TSS (ENSMUSG00000021910.15) 6067 ENSMUSG00000021910.15 ENSMUSG00000021910 ENSMUST00000167602 Nisch protein_coding Interval_170003 chr9 103556801 103557578 + 0 NA promoter-TSS (ENSMUSG00000099616.1) antisense-promoter-TSS (ENSMUSG00000099616.1) 99 ENSMUSG00000099616.1 ENSMUSG00000099616 ENSMUST00000190332 4932413F04Rik antisense Interval_19310 chr10 96522560 96522968 + 0 NA intron (ENSMUSG00000112354.1, intron 2 of 2) lincRNA-intron (ENSMUSG00000112264.1, intron 1 of 1) 1218 ENSMUSG00000112264.1 ENSMUSG00000112264 ENSMUST00000219016 Gm48505 lincRNA Interval_169241 chr9 95714734 95715064 + 0 NA TTS (ENSMUSG00000032839.13) protein_coding-TTS (ENSMUSG00000032839.13) 34593 ENSMUSG00000015354.8 ENSMUSG00000015354 ENSMUST00000151210 Pcolce2 protein_coding Interval_141007 chr6 124317460 124317679 + 0 NA exon (ENSMUSG00000008845.9, exon 7 of 17) protein_coding-exon (ENSMUSG00000008845.9, exon 7 of 17) -2918 ENSMUSG00000008845.9 ENSMUSG00000008845 ENSMUST00000203210 Cd163 protein_coding Interval_8234 chr1 136644343 136645161 + 0 NA Intergenic Intergenic 19851 ENSMUSG00000041483.14 ENSMUSG00000041483 ENSMUST00000112046 Zfp281 protein_coding Interval_117055 chr4 119255275 119255567 + 0 NA promoter-TSS (ENSMUSG00000066058.11) protein_coding-promoter-TSS (ENSMUSG00000066058.11) -88 ENSMUSG00000066058.11 ENSMUSG00000066058 ENSMUST00000094823 Cldn19 protein_coding Interval_39707 chr12 94059583 94059875 + 0 NA promoter-TSS (ENSMUSG00000113215.1) processed_pseudogene-promoter-TSS (ENSMUSG00000113215.1) -28 ENSMUSG00000113215.1 ENSMUSG00000113215 ENSMUST00000222410 Gm18749 processed_pseudogene Interval_118819 chr4 133874165 133874714 + 0 NA intron (ENSMUSG00000003644.17, intron 2 of 3) protein_coding-intron (ENSMUSG00000003644.17, intron 2 of 21) 1957 ENSMUSG00000085009.1 ENSMUSG00000085009 ENSMUST00000134799 Gm12977 antisense Interval_4 GL456210.1 31993 32221 + 0 NA NA NA NA NA Interval_75350 chr17 66063634 66063885 + 0 NA intron (ENSMUSG00000034647.15, intron 1 of 8) protein_coding-intron (ENSMUSG00000034647.15, intron 1 of 12) -22335 ENSMUSG00000094158.1 ENSMUSG00000094158 ENSMUST00000083372 Gm23264 snRNA Interval_16728 chr10 67653942 67654718 + 0 NA Intergenic Intergenic -11029 ENSMUSG00000112097.1 ENSMUSG00000112097 ENSMUST00000219396 Gm32515 lincRNA Interval_105076 chr3 81021406 81023081 + 0 NA Intergenic Intergenic -10711 ENSMUSG00000106293.1 ENSMUSG00000106293 ENSMUST00000198860 Gm42476 lincRNA Interval_157710 chr8 72443180 72444361 + 0 NA promoter-TSS (ENSMUSG00000019732.14) protein_coding-promoter-TSS (ENSMUSG00000019732.14) -8614 ENSMUSG00000019732.14 ENSMUSG00000019732 ENSMUST00000109974 Calr3 protein_coding Interval_140143 chr6 114827002 114827246 + 0 NA intron (ENSMUSG00000030314.16, intron 20 of 20) protein_coding-intron (ENSMUSG00000030314.16, intron 18 of 18) 37734 ENSMUSG00000107395.1 ENSMUSG00000107395 ENSMUST00000203217 Gm44331 processed_pseudogene Interval_12165 chr1 190344262 190345017 + 0 NA Intergenic Intergenic -59006 ENSMUSG00000103644.1 ENSMUSG00000103644 ENSMUST00000193966 Gm29678 lincRNA Interval_68693 chr16 84784893 84785646 + 0 NA intron (ENSMUSG00000053062.16, intron 1 of 9) protein_coding-intron (ENSMUSG00000053062.16, intron 1 of 3) -8289 ENSMUSG00000053062.16 ENSMUSG00000053062 ENSMUST00000138054 Jam2 protein_coding Interval_84310 chr19 9992585 9993651 + 0 NA promoter-TSS (ENSMUSG00000037418.6) protein_coding-promoter-TSS (ENSMUSG00000037418.6) 5452 ENSMUSG00000037418.6 ENSMUSG00000037418 ENSMUST00000144273 Best1 protein_coding Interval_144007 chr7 18925110 18926826 + 0 NA promoter-TSS (ENSMUSG00000030411.16) protein_coding-promoter-TSS (ENSMUSG00000030411.16) 80 ENSMUSG00000030411.16 ENSMUSG00000030411 ENSMUST00000220302 Nova2 protein_coding Interval_76455 chr17 80295400 80295961 + 0 NA intron (ENSMUSG00000045257.10, intron 4 of 4) protein_coding-intron (ENSMUSG00000045257.10, intron 4 of 4) 5477 ENSMUSG00000045257.10 ENSMUSG00000045257 ENSMUST00000061703 Morn2 protein_coding Interval_130542 chr5 128697304 128697663 + 0 NA Intergenic Intergenic -5041 ENSMUSG00000029423.10 ENSMUSG00000029423 ENSMUST00000195959 Piwil1 protein_coding Interval_13808 chr10 22776036 22776508 + 0 NA Intergenic Intergenic -15047 ENSMUSG00000112727.1 ENSMUSG00000112727 ENSMUST00000220252 Gm17794 processed_pseudogene Interval_75652 chr17 69968725 69970723 + 0 NA intron (ENSMUSG00000003279.17, intron 1 of 1) protein_coding-intron (ENSMUSG00000003279.17, intron 1 of 14) -43893 ENSMUSG00000117078.1 ENSMUSG00000117078 ENSMUST00000232868 Gm4561 processed_pseudogene Interval_33846 chr11 118960734 118961023 + 0 NA Intergenic Intergenic -27338 ENSMUSG00000046697.17 ENSMUSG00000046697 ENSMUST00000106273 Enpp7 protein_coding Interval_39741 chr12 96194179 96194584 + 0 NA Intergenic Intergenic 34982 ENSMUSG00000112024.1 ENSMUSG00000112024 ENSMUST00000219586 Gm47394 unprocessed_pseudogene Interval_83278 chr18 83372681 83372885 + 0 NA Intergenic Intergenic -1433 ENSMUSG00000117993.1 ENSMUSG00000117993 ENSMUST00000236713 Gm31503 lincRNA Interval_77810 chr18 3865008 3865329 + 0 NA Intergenic Intergenic 5060 ENSMUSG00000084719.1 ENSMUSG00000084719 ENSMUST00000122770 Gm24632 misc_RNA Interval_16077 chr10 60580023 60580352 + 0 NA intron (ENSMUSG00000012819.15, intron 5 of 65) protein_coding-intron (ENSMUSG00000012819.15, intron 5 of 66) 172596 ENSMUSG00000020100.15 ENSMUSG00000020100 ENSMUST00000144989 Slc29a3 protein_coding Interval_41641 chr12 117303128 117304049 + 0 NA intron (ENSMUSG00000101930.1, intron 1 of 1) antisense-intron (ENSMUSG00000101930.1, intron 1 of 1) 33424 ENSMUSG00000101930.1 ENSMUSG00000101930 ENSMUST00000186454 Gm5441 antisense Interval_163756 chr9 25317960 25320436 + 0 NA Intergenic Intergenic -30300 ENSMUSG00000111558.1 ENSMUSG00000111558 ENSMUST00000216734 Gm18891 processed_pseudogene Interval_3086 chr1 53065855 53066328 + 0 NA intron (ENSMUSG00000026100.6, intron 2 of 2) protein_coding-intron (ENSMUSG00000026100.6, intron 2 of 2) 4434 ENSMUSG00000026100.6 ENSMUSG00000026100 ENSMUST00000191197 Mstn protein_coding Interval_122611 chr5 24188170 24189072 + 0 NA Intergenic Intergenic 21103 ENSMUSG00000099891.1 ENSMUSG00000099891 ENSMUST00000190879 Gm5575 processed_pseudogene Interval_158942 chr8 88145309 88145634 + 0 NA intron (ENSMUSG00000031657.16, intron 5 of 14) protein_coding-intron (ENSMUSG00000031657.16, intron 5 of 14) -6954 ENSMUSG00000055968.1 ENSMUSG00000055968 ENSMUST00000069786 Gm9988 pseudogene Interval_28492 chr11 76330117 76330369 + 0 NA intron (ENSMUSG00000020844.6, intron 1 of 7) protein_coding-intron (ENSMUSG00000020844.6, intron 1 of 7) 68825 ENSMUSG00000020844.6 ENSMUSG00000020844 ENSMUST00000131472 Nxn protein_coding Interval_141997 chr6 136461494 136463745 + 0 NA Intergenic Intergenic 24567 ENSMUSG00000091408.3 ENSMUSG00000091408 ENSMUST00000178117 Gm6728 processed_pseudogene Interval_80071 chr18 37296082 37297233 + 0 NA TTS (ENSMUSG00000051599.4) protein_coding-TTS (ENSMUSG00000051599.4) 1817 ENSMUSG00000051599.4 ENSMUSG00000051599 ENSMUST00000193137 Pcdhb2 protein_coding Interval_162259 chr8 126497202 126498458 + 0 NA Intergenic Intergenic -21418 ENSMUSG00000074026.3 ENSMUSG00000074026 ENSMUST00000098307 Gm6091 processed_pseudogene Interval_131548 chr5 138081492 138082196 + 0 NA Intergenic Intergenic -3276 ENSMUSG00000029729.12 ENSMUSG00000029729 ENSMUST00000110962 Zkscan1 protein_coding Interval_147406 chr7 66506125 66506974 + 0 NA Intergenic Intergenic 59076 ENSMUSG00000109330.1 ENSMUSG00000109330 ENSMUST00000208155 Gm44754 processed_pseudogene Interval_112628 chr4 43693775 43694209 + 0 NA TTS (ENSMUSG00000050215.6) protein_coding-TTS (ENSMUSG00000050215.6) 1306 ENSMUSG00000088947.1 ENSMUSG00000088947 ENSMUST00000158322 Gm23257 rRNA Interval_79571 chr18 33830031 33830822 + 0 NA intron (ENSMUSG00000024376.7, intron 2 of 7) protein_coding-intron (ENSMUSG00000024376.7, intron 14 of 23) 35262 ENSMUSG00000092819.1 ENSMUSG00000092819 ENSMUST00000175078 Gm23639 snoRNA Interval_110945 chr4 10693603 10694998 + 0 NA intron (ENSMUSG00000086080.7, intron 1 of 3) lincRNA-intron (ENSMUSG00000086080.7, intron 1 of 3) 103511 ENSMUSG00000086080.7 ENSMUSG00000086080 ENSMUST00000141312 1700123O12Rik lincRNA Interval_17107 chr10 71375746 71375918 + 0 NA intron (ENSMUSG00000060733.13, intron 4 of 5) protein_coding-intron (ENSMUSG00000060733.13, intron 4 of 5) 27996 ENSMUSG00000060733.13 ENSMUSG00000060733 ENSMUST00000145521 Ipmk protein_coding Interval_84965 chr19 20434285 20434769 + 0 NA intron (ENSMUSG00000094732.2, intron 6 of 8) lincRNA-intron (ENSMUSG00000094732.2, intron 5 of 7) -9745 ENSMUSG00000114469.2 ENSMUSG00000114469 ENSMUST00000225910 C730002L08Rik processed_transcript Interval_66828 chr16 37947146 37947577 + 0 NA intron (ENSMUSG00000046961.8, intron 1 of 9) protein_coding-intron (ENSMUSG00000046961.8, intron 1 of 9) 30865 ENSMUSG00000046961.8 ENSMUSG00000046961 ENSMUST00000061274 Gpr156 protein_coding Interval_2493 chr1 39729652 39729947 + 0 NA Intergenic Intergenic -8802 ENSMUSG00000057173.8 ENSMUSG00000057173 ENSMUST00000126760 Rfx8 protein_coding Interval_49097 chr13 107962912 107963200 + 0 NA Intergenic Intergenic -33229 ENSMUSG00000114627.1 ENSMUSG00000114627 ENSMUST00000224800 B230220B15Rik lincRNA Interval_64668 chr16 14017299 14018165 + 0 NA intron (ENSMUSG00000044117.12, intron 1 of 3) protein_coding-intron (ENSMUSG00000044117.12, intron 1 of 5) -6016 ENSMUSG00000082554.1 ENSMUSG00000082554 ENSMUST00000120696 Gm15806 processed_pseudogene Interval_174304 chrX 144292366 144293072 + 0 NA Intergenic Intergenic -4386 ENSMUSG00000083200.1 ENSMUSG00000083200 ENSMUST00000120163 Gm15066 processed_pseudogene Interval_137404 chr6 71952643 71953056 + 0 NA intron (ENSMUSG00000049553.11, intron 18 of 19) protein_coding-intron (ENSMUSG00000049553.11, intron 18 of 33) 4488 ENSMUSG00000049553.11 ENSMUSG00000049553 ENSMUST00000205517 Polr1a protein_coding Interval_41434 chr12 113878821 113879486 + 0 NA TTS (ENSMUSG00000096638.2) IG_V_gene-TTS (ENSMUSG00000096638.2) 388 ENSMUSG00000096638.2 ENSMUSG00000096638 ENSMUST00000103451 Ighv2-9 IG_V_gene Interval_86025 chr19 35015133 35016351 + 0 NA Intergenic Intergenic 36935 ENSMUSG00000101966.2 ENSMUSG00000101966 ENSMUST00000186108 Gm5248 processed_pseudogene Interval_40952 chr12 110203686 110204109 + 0 NA Intergenic Intergenic -15836 ENSMUSG00000113733.1 ENSMUSG00000113733 ENSMUST00000222571 Gm34785 lincRNA Interval_26926 chr11 61619696 61620940 + 0 NA Intergenic Intergenic -40631 ENSMUSG00000001036.17 ENSMUSG00000001036 ENSMUST00000137525 Epn2 protein_coding Interval_1809 chr1 33926702 33927596 + 0 NA intron (ENSMUSG00000026131.20, intron 2 of 102) protein_coding-intron (ENSMUSG00000026131.20, intron 2 of 102) 4694 ENSMUSG00000103596.1 ENSMUSG00000103596 ENSMUST00000193333 Gm37354 TEC Interval_19775 chr10 108685998 108686349 + 0 NA intron (ENSMUSG00000035864.14, intron 4 of 7) protein_coding-intron (ENSMUSG00000035864.14, intron 4 of 10) 13987 ENSMUSG00000112039.1 ENSMUSG00000112039 ENSMUST00000218023 Gm5136 protein_coding Interval_42797 chr13 19628337 19628697 + 0 NA intron (ENSMUSG00000021319.7, intron 4 of 5) protein_coding-intron (ENSMUSG00000021319.7, intron 4 of 5) 3762 ENSMUSG00000021319.7 ENSMUSG00000021319 ENSMUST00000222992 Sfrp4 protein_coding Interval_166855 chr9 63251590 63251795 + 0 NA intron (ENSMUSG00000058444.8, intron 8 of 10) protein_coding-intron (ENSMUSG00000058444.8, intron 16 of 21) -104681 ENSMUSG00000022245.15 ENSMUSG00000022245 ENSMUST00000055281 Skor1 protein_coding Interval_75686 chr17 70662106 70662955 + 0 NA intron (ENSMUSG00000003279.17, intron 3 of 9) protein_coding-intron (ENSMUSG00000003279.17, intron 8 of 14) 93052 ENSMUSG00000097282.1 ENSMUSG00000097282 ENSMUST00000181546 5031415H12Rik antisense Interval_161115 chr8 117577264 117578335 + 0 NA intron (ENSMUSG00000034330.10, intron 9 of 32) protein_coding-intron (ENSMUSG00000034330.10, intron 9 of 32) -30773 ENSMUSG00000092818.2 ENSMUSG00000092818 ENSMUST00000175077 Gm27361 miRNA Interval_8128 chr1 135865450 135866317 + 0 NA Intergenic Intergenic -3899 ENSMUSG00000101482.1 ENSMUSG00000101482 ENSMUST00000189256 Gm28883 processed_pseudogene Interval_47985 chr13 94868303 94869097 + 0 NA Intergenic Intergenic -13900 ENSMUSG00000021685.11 ENSMUSG00000021685 ENSMUST00000184985 Otp protein_coding Interval_171250 chr9 115645824 115647607 + 0 NA Intergenic Intergenic -19199 ENSMUSG00000111398.1 ENSMUSG00000111398 ENSMUST00000215827 D330037F02Rik processed_transcript Interval_82828 chr18 77257578 77259162 + 0 NA exon (ENSMUSG00000025425.18, exon 8 of 8) protein_coding-exon (ENSMUSG00000025425.18, exon 8 of 8) 2456 ENSMUSG00000025425.18 ENSMUSG00000025425 ENSMUST00000236592 St8sia5 protein_coding Interval_172588 chrX 37125652 37127628 + 0 NA promoter-TSS (ENSMUSG00000016409.4) protein_coding-promoter-TSS (ENSMUSG00000016409.4) -9776 ENSMUSG00000016409.4 ENSMUSG00000016409 ENSMUST00000152906 Nkap protein_coding Interval_91316 chr2 37724102 37724291 + 0 NA Intergenic Intergenic -35912 ENSMUSG00000092958.1 ENSMUSG00000092958 ENSMUST00000175217 Mir5128 miRNA Interval_73117 chr17 34905346 34905911 + 0 NA promoter-TSS (ENSMUSG00000013787.15) protein_coding-promoter-TSS (ENSMUSG00000013787.15) -1772 ENSMUSG00000013787.15 ENSMUSG00000013787 ENSMUST00000124002 Ehmt2 protein_coding Interval_154841 chr8 24265594 24267191 + 0 NA Intergenic Intergenic 45882 ENSMUSG00000109419.1 ENSMUSG00000109419 ENSMUST00000207606 Gm45163 lincRNA Interval_35522 chr12 24293296 24293777 + 0 NA Intergenic Intergenic 14715 ENSMUSG00000114120.1 ENSMUSG00000114120 ENSMUST00000220456 Gm4120 unprocessed_pseudogene Interval_155625 chr8 35273344 35273874 + 0 NA Intergenic Intergenic -28130 ENSMUSG00000109688.1 ENSMUSG00000109688 ENSMUST00000211189 Gm34597 lincRNA Interval_53980 chr14 64047377 64047695 + 0 NA Intergenic Intergenic 17663 ENSMUSG00000046049.7 ENSMUSG00000046049 ENSMUST00000224314 Rp1l1 protein_coding Interval_8664 chr1 146533618 146533833 + 0 NA intron (ENSMUSG00000035131.14, intron 2 of 7) protein_coding-intron (ENSMUSG00000035131.14, intron 2 of 7) 36038 ENSMUSG00000035131.14 ENSMUSG00000035131 ENSMUST00000125331 Brinp3 protein_coding Interval_50098 chr14 7964388 7964743 + 0 NA TTS (ENSMUSG00000025279.7) protein_coding-TTS (ENSMUSG00000025279.7) 7277 ENSMUSG00000109649.1 ENSMUSG00000109649 ENSMUST00000211339 Gm45521 protein_coding Interval_168131 chr9 77415862 77416294 + 0 NA Intergenic Intergenic -16660 ENSMUSG00000099170.1 ENSMUSG00000099170 ENSMUST00000183878 5730403I07Rik lincRNA Interval_49203 chr13 109425364 109426441 + 0 NA intron (ENSMUSG00000021699.17, intron 2 of 5) protein_coding-intron (ENSMUSG00000021699.17, intron 1 of 14) 101158 ENSMUSG00000076946.2 ENSMUSG00000076946 ENSMUST00000103758 Mir582 miRNA Interval_17247 chr10 75260448 75261971 + 0 NA exon (ENSMUSG00000033444.14, exon 1 of 3) protein_coding-exon (ENSMUSG00000033444.14, exon 1 of 3) 242 ENSMUSG00000033444.14 ENSMUSG00000033444 ENSMUST00000218644 Specc1l protein_coding Interval_50333 chr14 11890797 11890998 + 0 NA intron (ENSMUSG00000021745.14, intron 2 of 3) protein_coding-intron (ENSMUSG00000021745.14, intron 2 of 29) -13782 ENSMUSG00000114267.1 ENSMUSG00000114267 ENSMUST00000225771 Gm48600 TEC Interval_79586 chr18 33882842 33883242 + 0 NA intron (ENSMUSG00000024376.7, intron 3 of 5) protein_coding-intron (ENSMUSG00000024376.7, intron 5 of 23) 87878 ENSMUSG00000092819.1 ENSMUSG00000092819 ENSMUST00000175078 Gm23639 snoRNA Interval_96142 chr2 120006048 120006326 + 0 NA intron (ENSMUSG00000033902.12, intron 2 of 30) protein_coding-intron (ENSMUSG00000033902.12, intron 2 of 29) -11330 ENSMUSG00000098632.1 ENSMUSG00000098632 ENSMUST00000184907 Mir7665 miRNA Interval_93572 chr2 74578204 74579505 + 0 NA promoter-TSS (ENSMUSG00000009207.15) protein_coding-promoter-TSS (ENSMUSG00000009207.15) -222 ENSMUSG00000087205.1 ENSMUSG00000087205 ENSMUST00000156925 4930445N08Rik antisense Interval_76898 chr17 84824906 84825755 + 0 NA intron (ENSMUSG00000117595.1, intron 2 of 3) lincRNA-intron (ENSMUSG00000117595.1, intron 2 of 3) 14966 ENSMUSG00000117595.1 ENSMUSG00000117595 ENSMUST00000235108 Gm49981 lincRNA Interval_72969 chr17 33881935 33884233 + 0 NA TTS (ENSMUSG00000079553.11) protein_coding-TTS (ENSMUSG00000079553.11) 3649 ENSMUSG00000098621.1 ENSMUSG00000098621 ENSMUST00000185129 Gm27740 miRNA Interval_147598 chr7 68844908 68845242 + 0 NA intron (ENSMUSG00000109407.1, intron 2 of 2) lincRNA-intron (ENSMUSG00000109407.1, intron 2 of 2) 70933 ENSMUSG00000109407.1 ENSMUSG00000109407 ENSMUST00000208180 Gm34664 lincRNA Interval_71241 chr17 21523332 21523705 + 0 NA intron (ENSMUSG00000117037.1, intron 2 of 3) transcribed_processed_pseudogene-intron (ENSMUSG00000117037.1, intron 2 of 3) -6762 ENSMUSG00000117037.1 ENSMUSG00000117037 ENSMUST00000233488 Gm50433 transcribed_processed_pseudogene Interval_148885 chr7 89841665 89842359 + 0 NA intron (ENSMUSG00000030621.17, intron 7 of 10) protein_coding-intron (ENSMUSG00000030621.17, intron 2 of 8) 14794 ENSMUSG00000109150.1 ENSMUSG00000109150 ENSMUST00000207900 Gm45793 TEC Interval_56449 chr14 118834411 118834665 + 0 NA intron (ENSMUSG00000022132.15, intron 1 of 3) protein_coding-intron (ENSMUSG00000022132.15, intron 1 of 4) -7507 ENSMUSG00000077661.1 ENSMUSG00000077661 ENSMUST00000104473 n-R5s51 rRNA Interval_86077 chr19 36373441 36373921 + 0 NA intron (ENSMUSG00000024805.16, intron 1 of 8) protein_coding-intron (ENSMUSG00000024805.16, intron 1 of 8) 11216 ENSMUSG00000087783.1 ENSMUSG00000087783 ENSMUST00000157158 Gm23170 snRNA Interval_56493 chr14 119158730 119160096 + 0 NA intron (ENSMUSG00000053465.6, intron 1 of 1) protein_coding-intron (ENSMUSG00000053465.6, intron 1 of 1) 21072 ENSMUSG00000053465.6 ENSMUSG00000053465 ENSMUST00000065904 Hs6st3 protein_coding Interval_77654 chr17 93607603 93607806 + 0 NA Intergenic Intergenic 72961 ENSMUSG00000117514.1 ENSMUSG00000117514 ENSMUST00000234106 Gm50002 processed_pseudogene Interval_45413 chr13 54983246 54983965 + 0 NA intron (ENSMUSG00000025876.15, intron 1 of 14) protein_coding-intron (ENSMUSG00000025876.15, intron 1 of 15) -19405 ENSMUSG00000025876.15 ENSMUSG00000025876 ENSMUST00000137967 Unc5a protein_coding Interval_121156 chr4 153617379 153618199 + 0 NA Intergenic Intergenic -135610 ENSMUSG00000039546.9 ENSMUSG00000039546 ENSMUST00000149177 Ajap1 protein_coding Interval_148682 chr7 84117132 84117405 + 0 NA intron (ENSMUSG00000038459.10, intron 1 of 2) protein_coding-intron (ENSMUSG00000038459.10, intron 1 of 2) -30766 ENSMUSG00000052353.13 ENSMUSG00000052353 ENSMUST00000147578 Cemip protein_coding Interval_110030 chr3 152644442 152644611 + 0 NA intron (ENSMUSG00000039058.11, intron 5 of 13) protein_coding-intron (ENSMUSG00000039058.11, intron 5 of 13) -22387 ENSMUSG00000097745.1 ENSMUSG00000097745 ENSMUST00000181093 AI115009 antisense Interval_83649 chr19 3460116 3460340 + 0 NA intron (ENSMUSG00000024908.15, intron 5 of 7) protein_coding-intron (ENSMUSG00000024908.15, intron 21 of 22) -25862 ENSMUSG00000114315.1 ENSMUSG00000114315 ENSMUST00000224419 Gm48696 antisense Interval_61191 chr15 79866690 79869309 + 0 NA Intergenic Intergenic -5870 ENSMUSG00000116283.1 ENSMUSG00000116283 ENSMUST00000229056 Gm49412 TEC Interval_21348 chr10 128104734 128105207 + 0 NA intron (ENSMUSG00000040054.17, intron 2 of 29) protein_coding-intron (ENSMUSG00000040054.17, intron 2 of 29) 13388 ENSMUSG00000040054.17 ENSMUSG00000040054 ENSMUST00000219980 Baz2a protein_coding Interval_20927 chr10 122096617 122097897 + 0 NA promoter-TSS (ENSMUSG00000034620.17) protein_coding-promoter-TSS (ENSMUSG00000034620.17) -1121 ENSMUSG00000034620.17 ENSMUSG00000034620 ENSMUST00000135083 Rxylt1 protein_coding Interval_68588 chr16 79888347 79888544 + 0 NA Intergenic Intergenic 26426 ENSMUSG00000097552.2 ENSMUSG00000097552 ENSMUST00000181937 Rps19-ps12 processed_pseudogene Interval_139279 chr6 97828400 97828724 + 0 NA intron (ENSMUSG00000035158.15, intron 1 of 9) protein_coding-intron (ENSMUSG00000035158.15, intron 1 of 9) 38050 ENSMUSG00000089464.1 ENSMUSG00000089464 ENSMUST00000158839 Gm23703 snoRNA Interval_162450 chr8 128886795 128887387 + 0 NA intron (ENSMUSG00000025808.17, intron 33 of 55) protein_coding-intron (ENSMUSG00000025808.17, intron 33 of 55) -87925 ENSMUSG00000025808.17 ENSMUSG00000025808 ENSMUST00000108747 Ccdc7a protein_coding Interval_65668 chr16 25008071 25008854 + 0 NA Intergenic Intergenic -51177 ENSMUSG00000096960.1 ENSMUSG00000096960 ENSMUST00000181655 A230028O05Rik lincRNA Interval_29772 chr11 86695485 86695730 + 0 NA exon (ENSMUSG00000047126.17, exon 32 of 32) protein_coding-exon (ENSMUSG00000047126.17, exon 32 of 32) 11622 ENSMUSG00000072582.9 ENSMUSG00000072582 ENSMUST00000108021 Ptrh2 protein_coding Interval_171592 chr9 119425298 119425901 + 0 NA intron (ENSMUSG00000061393.14, intron 1 of 10) protein_coding-intron (ENSMUSG00000061393.14, intron 1 of 9) -4747 ENSMUSG00000061393.14 ENSMUSG00000061393 ENSMUST00000213431 Acvr2b protein_coding Interval_74928 chr17 57420581 57421059 + 0 NA intron (ENSMUSG00000004730.15, intron 12 of 21) protein_coding-intron (ENSMUSG00000004730.15, intron 12 of 22) 62121 ENSMUSG00000004730.15 ENSMUSG00000004730 ENSMUST00000004850 Adgre1 protein_coding Interval_113551 chr4 56492495 56493531 + 0 NA Intergenic Intergenic 105211 ENSMUSG00000082613.1 ENSMUSG00000082613 ENSMUST00000122075 Gm12518 processed_pseudogene Interval_17774 chr10 80002420 80004180 + 0 NA exon (ENSMUSG00000035722.15, exon 15 of 46) protein_coding-exon (ENSMUSG00000035722.15, exon 15 of 46) 5724 ENSMUSG00000035722.15 ENSMUSG00000035722 ENSMUST00000043866 Abca7 protein_coding Interval_102522 chr3 27461065 27461756 + 0 NA intron (ENSMUSG00000039286.12, intron 18 of 26) protein_coding-intron (ENSMUSG00000039286.12, intron 17 of 25) -85231 ENSMUSG00000106625.1 ENSMUSG00000106625 ENSMUST00000198723 Gm43344 TEC Interval_160971 chr8 116587352 116588705 + 0 NA intron (ENSMUSG00000031758.10, intron 4 of 6) protein_coding-intron (ENSMUSG00000031758.10, intron 4 of 6) 83054 ENSMUSG00000034467.7 ENSMUSG00000034467 ENSMUST00000078170 Dynlrb2 protein_coding Interval_5032 chr1 84426880 84427889 + 0 NA intron (ENSMUSG00000036766.12, intron 8 of 12) protein_coding-intron (ENSMUSG00000036766.12, intron 8 of 12) -31985 ENSMUSG00000104396.1 ENSMUSG00000104396 ENSMUST00000191700 Gm37959 TEC Interval_51960 chr14 34273341 34274658 + 0 NA intron (ENSMUSG00000041471.9, intron 1 of 1) protein_coding-intron (ENSMUSG00000041471.9, intron 2 of 10) -6844 ENSMUSG00000115214.1 ENSMUSG00000115214 ENSMUST00000227194 Gm49202 processed_pseudogene Interval_43506 chr13 32053554 32054166 + 0 NA intron (ENSMUSG00000038372.14, intron 7 of 10) protein_coding-intron (ENSMUSG00000038372.14, intron 7 of 10) 45315 ENSMUSG00000112944.1 ENSMUSG00000112944 ENSMUST00000222438 Gm48885 TEC Interval_169888 chr9 102762931 102763920 + 0 NA Intergenic Intergenic 3084 ENSMUSG00000102204.1 ENSMUSG00000102204 ENSMUST00000192388 Gm36958 TEC Interval_65616 chr16 24186502 24187427 + 0 NA intron (ENSMUSG00000115869.1, intron 3 of 3) sense_intronic-intron (ENSMUSG00000115869.1, intron 7 of 7) -18403 ENSMUSG00000116173.1 ENSMUSG00000116173 ENSMUST00000230625 Gm32126 sense_intronic Interval_36189 chr12 38527307 38528040 + 0 NA intron (ENSMUSG00000036095.11, intron 22 of 24) protein_coding-intron (ENSMUSG00000036095.11, intron 22 of 24) 86848 ENSMUSG00000112967.1 ENSMUSG00000112967 ENSMUST00000222922 4930428E07Rik antisense Interval_99421 chr2 160921454 160922211 + 0 NA Intergenic Intergenic 4816 ENSMUSG00000087147.1 ENSMUSG00000087147 ENSMUST00000131908 Gm14228 lincRNA Interval_109896 chr3 150085750 150085987 + 0 NA Intergenic Intergenic -12326 ENSMUSG00000047676.6 ENSMUSG00000047676 ENSMUST00000057740 Rpsa-ps10 processed_pseudogene Interval_167681 chr9 71879155 71880254 + 0 NA intron (ENSMUSG00000032228.16, intron 12 of 19) protein_coding-intron (ENSMUSG00000032228.16, intron 12 of 19) 19749 ENSMUSG00000102939.1 ENSMUSG00000102939 ENSMUST00000194817 Gm38111 TEC Interval_75053 chr17 62557182 62557749 + 0 NA Intergenic Intergenic -100345 ENSMUSG00000064570.1 ENSMUSG00000064570 ENSMUST00000082636 Gm25800 snoRNA Interval_43781 chr13 36386949 36387257 + 0 NA intron (ENSMUSG00000021420.13, intron 1 of 2) protein_coding-intron (ENSMUSG00000021420.13, intron 5 of 6) 60145 ENSMUSG00000021420.13 ENSMUSG00000021420 ENSMUST00000225048 Fars2 protein_coding Interval_47218 chr13 78194686 78195669 + 0 NA TTS (ENSMUSG00000069171.14) protein_coding-TTS (ENSMUSG00000069171.14) 2367 ENSMUSG00000069171.14 ENSMUSG00000069171 ENSMUST00000224798 Nr2f1 protein_coding Interval_77341 chr17 88079426 88080224 + 0 NA Intergenic Intergenic -14582 ENSMUSG00000005371.15 ENSMUSG00000005371 ENSMUST00000235056 Fbxo11 protein_coding Interval_104718 chr3 69721453 69723000 + 0 NA promoter-TSS (ENSMUSG00000027787.14) protein_coding-promoter-TSS (ENSMUSG00000027787.14) -2010 ENSMUSG00000027787.14 ENSMUSG00000027787 ENSMUST00000150210 Nmd3 protein_coding Interval_26612 chr11 59227516 59228905 + 0 NA promoter-TSS (ENSMUSG00000048076.14) protein_coding-promoter-TSS (ENSMUSG00000048076.14) -48 ENSMUSG00000048076.14 ENSMUSG00000048076 ENSMUST00000061242 Arf1 protein_coding Interval_26257 chr11 55460552 55461683 + 0 NA promoter-TSS (ENSMUSG00000018585.9) protein_coding-promoter-TSS (ENSMUSG00000018585.9) 80 ENSMUSG00000018585.9 ENSMUSG00000018585 ENSMUST00000138412 Atox1 protein_coding Interval_94076 chr2 83680717 83681482 + 0 NA Intergenic Intergenic 20017 ENSMUSG00000085450.1 ENSMUSG00000085450 ENSMUST00000122851 Gm13686 antisense Interval_134135 chr6 21616321 21616723 + 0 NA intron (ENSMUSG00000060882.5, intron 1 of 5) protein_coding-intron (ENSMUSG00000060882.5, intron 1 of 5) -64779 ENSMUSG00000106855.1 ENSMUSG00000106855 ENSMUST00000201318 5330437M03Rik TEC Interval_30089 chr11 89113862 89114819 + 0 NA Intergenic Intergenic 12366 ENSMUSG00000086919.1 ENSMUSG00000086919 ENSMUST00000138295 Gm11497 lincRNA Interval_38398 chr12 78704816 78705018 + 0 NA intron (ENSMUSG00000056987.8, intron 2 of 4) protein_coding-intron (ENSMUSG00000056987.8, intron 2 of 8) 13235 ENSMUSG00000056987.8 ENSMUSG00000056987 ENSMUST00000219314 Fam71d protein_coding Interval_38414 chr12 78861042 78862402 + 0 NA promoter-TSS (ENSMUSG00000021114.9) protein_coding-promoter-TSS (ENSMUSG00000021114.9) -227 ENSMUSG00000021114.9 ENSMUSG00000021114 ENSMUST00000219891 Atp6v1d protein_coding Interval_61818 chr15 84372561 84373528 + 0 NA Intergenic Intergenic -26265 ENSMUSG00000116442.1 ENSMUSG00000116442 ENSMUST00000230576 Gm5214 processed_pseudogene Interval_106247 chr3 94891216 94891463 + 0 NA Intergenic Intergenic -5384 ENSMUSG00000005779.12 ENSMUSG00000005779 ENSMUST00000200513 Psmb4 protein_coding Interval_91125 chr2 35282062 35282967 + 0 NA promoter-TSS (ENSMUSG00000026879.14) protein_coding-promoter-TSS (ENSMUSG00000026879.14) 2124 ENSMUSG00000106961.1 ENSMUSG00000106961 ENSMUST00000202212 Gm43128 TEC Interval_94298 chr2 87641051 87641567 + 0 NA promoter-TSS (ENSMUSG00000082428.1) processed_pseudogene-promoter-TSS (ENSMUSG00000082428.1) -516 ENSMUSG00000082428.1 ENSMUSG00000082428 ENSMUST00000118805 Gm13742 processed_pseudogene Interval_49170 chr13 109078888 109079079 + 0 NA intron (ENSMUSG00000021699.17, intron 2 of 15) protein_coding-intron (ENSMUSG00000021699.17, intron 3 of 16) 218817 ENSMUSG00000021699.17 ENSMUSG00000021699 ENSMUST00000155459 Pde4d protein_coding Interval_127999 chr5 110172031 110172361 + 0 NA TTS (ENSMUSG00000014668.15) protein_coding-TTS (ENSMUSG00000014668.15) -2300 ENSMUSG00000086247.7 ENSMUSG00000086247 ENSMUST00000125250 Gm15787 processed_transcript Interval_62990 chr15 98524330 98524560 + 0 NA intron (ENSMUSG00000022992.17, intron 8 of 9) protein_coding-intron (ENSMUSG00000022992.17, intron 8 of 9) 2037 ENSMUSG00000065939.1 ENSMUSG00000065939 ENSMUST00000084005 Snora2b snoRNA Interval_126824 chr5 93179365 93180660 + 0 NA TTS (ENSMUSG00000107019.1) TEC-TTS (ENSMUSG00000107019.1) 3042 ENSMUSG00000107019.1 ENSMUSG00000107019 ENSMUST00000202150 Gm43682 TEC Interval_78849 chr18 20954365 20955074 + 0 NA intron (ENSMUSG00000033107.6, intron 1 of 5) protein_coding-intron (ENSMUSG00000033107.6, intron 1 of 5) -6753 ENSMUSG00000033107.6 ENSMUSG00000033107 ENSMUST00000234316 Rnf125 protein_coding Interval_19259 chr10 95858170 95858365 + 0 NA Intergenic Intergenic 12532 ENSMUSG00000111992.1 ENSMUSG00000111992 ENSMUST00000218412 Gm47724 processed_pseudogene Interval_165639 chr9 50595259 50595470 + 0 NA TTS (ENSMUSG00000000171.5) protein_coding-TTS (ENSMUSG00000000171.5) 8448 ENSMUSG00000000171.5 ENSMUSG00000000171 ENSMUST00000000175 Sdhd protein_coding Interval_116131 chr4 107998801 107999216 + 0 NA intron (ENSMUSG00000008932.10, intron 3 of 10) protein_coding-intron (ENSMUSG00000008932.10, intron 3 of 10) 30674 ENSMUSG00000008932.10 ENSMUSG00000008932 ENSMUST00000124190 Slc1a7 protein_coding Interval_40227 chr12 102640353 102641283 + 0 NA intron (ENSMUSG00000057963.9, intron 2 of 4) protein_coding-intron (ENSMUSG00000057963.9, intron 2 of 9) 116 ENSMUSG00000057963.9 ENSMUSG00000057963 ENSMUST00000178697 Itpk1 protein_coding Interval_38496 chr12 79612392 79615047 + 0 NA intron (ENSMUSG00000059060.15, intron 1 of 2) protein_coding-intron (ENSMUSG00000059060.15, intron 7 of 10) 286366 ENSMUSG00000059060.15 ENSMUSG00000059060 ENSMUST00000221257 Rad51b protein_coding Interval_16453 chr10 62966506 62968096 + 0 NA intron (ENSMUSG00000036875.15, intron 2 of 5) protein_coding-intron (ENSMUSG00000036875.15, intron 17 of 20) 1620 ENSMUSG00000036875.15 ENSMUSG00000036875 ENSMUST00000137378 Dna2 protein_coding Interval_8697 chr1 148823110 148823934 + 0 NA Intergenic Intergenic 114854 ENSMUSG00000099842.1 ENSMUSG00000099842 ENSMUST00000187674 Gm4034 processed_pseudogene Interval_42117 chr13 8956588 8956885 + 0 NA promoter-TSS (ENSMUSG00000095414.1) snoRNA-promoter-TSS (ENSMUSG00000095414.1) -672 ENSMUSG00000095414.1 ENSMUSG00000095414 ENSMUST00000104108 Gm23923 snoRNA Interval_70752 chr17 14169365 14169946 + 0 NA Intergenic Intergenic -34073 ENSMUSG00000117185.1 ENSMUSG00000117185 ENSMUST00000232962 Gm34510 antisense Interval_667 chr1 9739587 9739836 + 0 NA intron (ENSMUSG00000045210.8, intron 1 of 2) protein_coding-intron (ENSMUSG00000045210.8, intron 1 of 2) 8671 ENSMUSG00000045210.8 ENSMUSG00000045210 ENSMUST00000057438 Vcpip1 protein_coding Interval_88443 chr2 5093639 5093978 + 0 NA Intergenic Intergenic -43968 ENSMUSG00000026676.7 ENSMUSG00000026676 ENSMUST00000027988 Ccdc3 protein_coding Interval_32877 chr11 112718206 112718794 + 0 NA TTS (ENSMUSG00000041674.16) processed_transcript-TTS (ENSMUSG00000041674.16) -7160 ENSMUSG00000041674.16 ENSMUSG00000041674 ENSMUST00000148724 BC006965 processed_transcript Interval_47010 chr13 74330717 74331292 + 0 NA intron (ENSMUSG00000021577.14, intron 10 of 14) protein_coding-intron (ENSMUSG00000021577.14, intron 10 of 14) -9535 ENSMUSG00000090004.1 ENSMUSG00000090004 ENSMUST00000159003 Gm16125 processed_pseudogene Interval_20747 chr10 120707625 120708607 + 0 NA Intergenic Intergenic -8913 ENSMUSG00000112716.1 ENSMUSG00000112716 ENSMUST00000219022 4930471E19Rik lincRNA Interval_55123 chr14 78307142 78308825 + 0 NA promoter-TSS (ENSMUSG00000022015.8) protein_coding-promoter-TSS (ENSMUSG00000022015.8) 60 ENSMUSG00000022015.8 ENSMUSG00000022015 ENSMUST00000022592 Tnfsf11 protein_coding Interval_127318 chr5 102766294 102766561 + 0 NA intron (ENSMUSG00000057315.14, intron 1 of 7) protein_coding-intron (ENSMUSG00000057315.14, intron 2 of 8) -42622 ENSMUSG00000057315.14 ENSMUSG00000057315 ENSMUST00000070000 Arhgap24 protein_coding Interval_133089 chr5 149740313 149740886 + 0 NA intron (ENSMUSG00000051950.10, intron 1 of 4) protein_coding-intron (ENSMUSG00000051950.10, intron 10 of 14) 1067 ENSMUSG00000051950.10 ENSMUSG00000051950 ENSMUST00000201088 B3glct protein_coding Interval_140863 chr6 122445016 122445272 + 0 NA Intergenic Intergenic -11760 ENSMUSG00000055093.10 ENSMUSG00000055093 ENSMUST00000119780 Gm8430 processed_pseudogene Interval_155937 chr8 41125435 41126328 + 0 NA intron (ENSMUSG00000045636.16, intron 1 of 1) protein_coding-intron (ENSMUSG00000045636.16, intron 1 of 13) 72771 ENSMUSG00000085672.1 ENSMUSG00000085672 ENSMUST00000125903 Gm16193 antisense Interval_34050 chr11 120197204 120197455 + 0 NA Intergenic Intergenic -8578 ENSMUSG00000075389.3 ENSMUSG00000075389 ENSMUST00000145437 2810410L24Rik processed_transcript Interval_41179 chr12 111653188 111654261 + 0 NA promoter-TSS (ENSMUSG00000007411.16) protein_coding-promoter-TSS (ENSMUSG00000007411.16) 17820 ENSMUSG00000001270.9 ENSMUSG00000001270 ENSMUST00000222513 Ckb protein_coding Interval_144761 chr7 28083989 28084537 + 0 NA intron (ENSMUSG00000047730.17, intron 2 of 2) protein_coding-intron (ENSMUSG00000047730.17, intron 3 of 19) 29531 ENSMUSG00000109262.1 ENSMUSG00000109262 ENSMUST00000208234 Gm44744 lincRNA Interval_39068 chr12 84812036 84812248 + 0 NA intron (ENSMUSG00000002020.15, intron 10 of 11) protein_coding-intron (ENSMUSG00000002020.15, intron 10 of 35) 38851 ENSMUSG00000021241.7 ENSMUSG00000021241 ENSMUST00000220726 Isca2 protein_coding Interval_70758 chr17 14199571 14200019 + 0 NA intron (ENSMUSG00000048826.7, intron 1 of 2) protein_coding-intron (ENSMUSG00000048826.7, intron 1 of 3) -3933 ENSMUSG00000117185.1 ENSMUSG00000117185 ENSMUST00000232962 Gm34510 antisense Interval_121891 chr5 9210946 9211190 + 0 NA Intergenic Intergenic 42005 ENSMUSG00000089562.1 ENSMUSG00000089562 ENSMUST00000158937 Gm24666 snRNA Interval_35023 chr12 16717560 16718272 + 0 NA intron (ENSMUSG00000036523.16, intron 9 of 34) protein_coding-intron (ENSMUSG00000036523.16, intron 7 of 32) 45676 ENSMUSG00000114049.1 ENSMUSG00000114049 ENSMUST00000223113 Gm48140 antisense Interval_119147 chr4 135840133 135840543 + 0 NA Intergenic Intergenic -13340 ENSMUSG00000081672.1 ENSMUSG00000081672 ENSMUST00000120937 Gm13000 processed_pseudogene Interval_144292 chr7 24332682 24333999 + 0 NA exon (ENSMUSG00000055826.5, exon 1 of 1) protein_coding-exon (ENSMUSG00000055826.5, exon 1 of 1) 596 ENSMUSG00000055826.5 ENSMUSG00000055826 ENSMUST00000069562 Tescl protein_coding Interval_4504 chr1 74661079 74662954 + 0 NA intron (ENSMUSG00000033257.14, intron 1 of 1) protein_coding-intron (ENSMUSG00000033257.14, intron 1 of 19) -27407 ENSMUSG00000033257.14 ENSMUSG00000033257 ENSMUST00000143790 Ttll4 protein_coding Interval_64481 chr16 11896390 11897102 + 0 NA intron (ENSMUSG00000065979.12, intron 1 of 3) protein_coding-intron (ENSMUSG00000065979.12, intron 1 of 2) -4617 ENSMUSG00000055015.5 ENSMUSG00000055015 ENSMUST00000068397 Gm9961 lincRNA Interval_32462 chr11 107676151 107676965 + 0 NA intron (ENSMUSG00000020721.16, intron 31 of 32) protein_coding-intron (ENSMUSG00000020721.16, intron 30 of 31) 5506 ENSMUSG00000020721.16 ENSMUSG00000020721 ENSMUST00000153080 Helz protein_coding Interval_151206 chr7 119632657 119632908 + 0 NA intron (ENSMUSG00000109093.1, intron 1 of 1) protein_coding-intron (ENSMUSG00000033533.14, intron 2 of 13) -1724 ENSMUSG00000108884.1 ENSMUSG00000108884 ENSMUST00000207795 Gm45792 antisense Interval_98607 chr2 153556237 153557139 + 0 NA Intergenic Intergenic 63898 ENSMUSG00000079001.1 ENSMUSG00000079001 ENSMUST00000109783 4930404H24Rik protein_coding Interval_21895 chr11 5049776 5050186 + 0 NA Intergenic Intergenic -8985 ENSMUSG00000034209.4 ENSMUSG00000034209 ENSMUST00000126974 Rasl10a protein_coding Interval_149302 chr7 97247804 97248430 + 0 NA intron (ENSMUSG00000004508.6, intron 2 of 9) protein_coding-intron (ENSMUSG00000004508.6, intron 2 of 9) 67877 ENSMUSG00000035713.15 ENSMUSG00000035713 ENSMUST00000181354 Usp35 protein_coding Interval_152882 chr7 139441791 139442077 + 0 NA intron (ENSMUSG00000025477.14, intron 1 of 15) protein_coding-intron (ENSMUSG00000025477.14, intron 1 of 15) -74725 ENSMUSG00000025477.14 ENSMUSG00000025477 ENSMUST00000152475 Inpp5a protein_coding Interval_40238 chr12 102689984 102690540 + 0 NA intron (ENSMUSG00000096751.3, intron 2 of 2) protein_coding-intron (ENSMUSG00000057963.9, intron 1 of 9) -5242 ENSMUSG00000089324.1 ENSMUSG00000089324 ENSMUST00000158699 Mir1936 miRNA Interval_60188 chr15 67110993 67111498 + 0 NA exon (ENSMUSG00000013846.10, exon 3 of 6) protein_coding-exon (ENSMUSG00000013846.10, exon 3 of 6) 17778 ENSMUSG00000013846.10 ENSMUSG00000013846 ENSMUST00000230150 St3gal1 protein_coding Interval_95755 chr2 115857939 115858354 + 0 NA Intergenic Intergenic 10721 ENSMUSG00000027210.20 ENSMUSG00000027210 ENSMUST00000138526 Meis2 protein_coding Interval_29554 chr11 84879522 84881390 + 0 NA promoter-TSS (ENSMUSG00000020527.14) protein_coding-promoter-TSS (ENSMUSG00000020527.14) -171 ENSMUSG00000045140.8 ENSMUSG00000045140 ENSMUST00000108080 Pigw protein_coding Interval_154207 chr8 13436048 13436330 + 0 NA intron (ENSMUSG00000038457.17, intron 1 of 6) protein_coding-intron (ENSMUSG00000038457.17, intron 1 of 7) 1000 ENSMUSG00000038457.17 ENSMUSG00000038457 ENSMUST00000209950 Tmem255b protein_coding Interval_154284 chr8 14022786 14023802 + 0 NA Intergenic Intergenic 24354 ENSMUSG00000110058.1 ENSMUSG00000110058 ENSMUST00000210969 Gm5907 lincRNA Interval_107942 chr3 117058964 117059223 + 0 NA Intergenic Intergenic 18672 ENSMUSG00000028009.7 ENSMUSG00000028009 ENSMUST00000029642 1700061I17Rik lincRNA Interval_133633 chr6 7822484 7823755 + 0 NA Intergenic Intergenic 12540 ENSMUSG00000107844.1 ENSMUSG00000107844 ENSMUST00000203028 Gm8686 processed_pseudogene Interval_133384 chr6 4504713 4506488 + 0 NA promoter-TSS (ENSMUSG00000029661.16) protein_coding-promoter-TSS (ENSMUSG00000029661.16) -487 ENSMUSG00000107603.1 ENSMUSG00000107603 ENSMUST00000204296 Gm43921 TEC Interval_4055 chr1 66940826 66941428 + 0 NA intron (ENSMUSG00000061816.15, intron 2 of 4) protein_coding-intron (ENSMUSG00000061816.15, intron 1 of 6) -6429 ENSMUSG00000061816.15 ENSMUSG00000061816 ENSMUST00000151328 Myl1 protein_coding Interval_123534 chr5 33287429 33287883 + 0 NA Intergenic Intergenic -12675 ENSMUSG00000037373.12 ENSMUSG00000037373 ENSMUST00000202190 Ctbp1 protein_coding Interval_382 chr1 4785104 4786213 + 0 NA promoter-TSS (ENSMUSG00000033845.13) protein_coding-promoter-TSS (ENSMUSG00000033845.13) -1092 ENSMUSG00000033845.13 ENSMUSG00000033845 ENSMUST00000132625 Mrpl15 protein_coding Interval_95260 chr2 105311236 105311995 + 0 NA intron (ENSMUSG00000055312.2, intron 2 of 2) protein_coding-intron (ENSMUSG00000055312.2, intron 3 of 3) 83733 ENSMUSG00000005973.6 ENSMUSG00000005973 ENSMUST00000127019 Rcn1 protein_coding Interval_97628 chr2 141102831 141103832 + 0 NA intron (ENSMUSG00000068205.14, intron 5 of 16) protein_coding-intron (ENSMUSG00000068205.14, intron 5 of 17) -23949 ENSMUSG00000083274.1 ENSMUSG00000083274 ENSMUST00000117884 Zcchc9-ps processed_pseudogene Interval_161590 chr8 121431437 121431748 + 0 NA intron (ENSMUSG00000092329.1, intron 1 of 15) protein_coding-intron (ENSMUSG00000092329.1, intron 1 of 15) -3388 ENSMUSG00000097438.1 ENSMUSG00000097438 ENSMUST00000181666 Gm26784 lincRNA Interval_78792 chr18 20658537 20658789 + 0 NA intron (ENSMUSG00000085595.1, intron 1 of 2) antisense-intron (ENSMUSG00000085595.1, intron 1 of 2) 6597 ENSMUSG00000085595.1 ENSMUSG00000085595 ENSMUST00000130296 Gm16090 antisense Interval_76756 chr17 83861124 83863043 + 0 NA Intergenic Intergenic -7665 ENSMUSG00000097254.2 ENSMUSG00000097254 ENSMUST00000234697 C430042M11Rik lincRNA Interval_113241 chr4 51700499 51700712 + 0 NA Intergenic Intergenic 44838 ENSMUSG00000088515.1 ENSMUSG00000088515 ENSMUST00000157890 Gm23043 snoRNA Interval_56333 chr14 117706238 117706567 + 0 NA intron (ENSMUSG00000058571.11, intron 4 of 9) protein_coding-intron (ENSMUSG00000058571.11, intron 4 of 8) 247445 ENSMUSG00000098648.1 ENSMUSG00000098648 ENSMUST00000183564 Mir6239 miRNA Interval_1088 chr1 15373261 15373865 + 0 NA intron (ENSMUSG00000092083.4, intron 2 of 2) protein_coding-intron (ENSMUSG00000092083.4, intron 1 of 1) 9261 ENSMUSG00000102937.1 ENSMUSG00000102937 ENSMUST00000193873 Gm38116 TEC Interval_62724 chr15 96475828 96477038 + 0 NA Intergenic Intergenic -18144 ENSMUSG00000116253.1 ENSMUSG00000116253 ENSMUST00000229198 Gm41392 lincRNA Interval_149556 chr7 99550825 99552344 + 0 NA promoter-TSS (ENSMUSG00000065571.1) miRNA-promoter-TSS (ENSMUSG00000065571.1) -685 ENSMUSG00000065571.1 ENSMUSG00000065571 ENSMUST00000083637 Mir326 miRNA Interval_98597 chr2 153492016 153493362 + 0 NA promoter-TSS (ENSMUSG00000079001.1) protein_coding-promoter-TSS (ENSMUSG00000079001.1) -101 ENSMUSG00000079001.1 ENSMUSG00000079001 ENSMUST00000109783 4930404H24Rik protein_coding Interval_94859 chr2 97964842 97965547 + 0 NA Intergenic Intergenic -15515 ENSMUSG00000082820.3 ENSMUSG00000082820 ENSMUST00000117547 Gm13803 processed_pseudogene Interval_126507 chr5 89354477 89355801 + 0 NA Intergenic Intergenic 80489 ENSMUSG00000035540.12 ENSMUSG00000035540 ENSMUST00000200534 Gc protein_coding Interval_126362 chr5 87142891 87143595 + 0 NA Intergenic Intergenic -2925 ENSMUSG00000054630.7 ENSMUSG00000054630 ENSMUST00000067790 Ugt2b5 protein_coding Interval_66085 chr16 31492688 31494056 + 0 NA Intergenic Intergenic -15015 ENSMUSG00000116762.1 ENSMUSG00000116762 ENSMUST00000231805 Gm46560 lincRNA Interval_71833 chr17 26402375 26402575 + 0 NA Intergenic Intergenic -12354 ENSMUSG00000034413.14 ENSMUSG00000034413 ENSMUST00000053020 Neurl1b protein_coding Interval_16936 chr10 70013869 70014356 + 0 NA intron (ENSMUSG00000069601.14, intron 22 of 24) protein_coding-intron (ENSMUSG00000069601.14, intron 16 of 16) -160899 ENSMUSG00000048701.13 ENSMUSG00000048701 ENSMUST00000135607 Ccdc6 protein_coding Interval_8756 chr1 150479499 150480500 + 0 NA Intergenic Intergenic -14401 ENSMUSG00000006014.16 ENSMUSG00000006014 ENSMUST00000159035 Prg4 protein_coding Interval_59609 chr15 56027324 56027838 + 0 NA Intergenic Intergenic 22251 ENSMUSG00000115678.1 ENSMUSG00000115678 ENSMUST00000228202 Gm49212 lincRNA Interval_52503 chr14 47127890 47128275 + 0 NA Intergenic Intergenic 11786 ENSMUSG00000115207.1 ENSMUSG00000115207 ENSMUST00000228734 Gm49132 TEC Interval_72771 chr17 32066007 32066581 + 0 NA Intergenic Intergenic 23961 ENSMUSG00000002791.17 ENSMUSG00000002791 ENSMUST00000235497 Pdxk-ps transcribed_unprocessed_pseudogene Interval_5219 chr1 86509263 86511400 + 0 NA Intergenic Intergenic -16406 ENSMUSG00000026238.14 ENSMUSG00000026238 ENSMUST00000188533 Ptma protein_coding Interval_98713 chr2 154466002 154466298 + 0 NA intron (ENSMUSG00000038533.15, intron 1 of 2) protein_coding-intron (ENSMUSG00000038533.15, intron 1 of 10) 29308 ENSMUSG00000038533.15 ENSMUSG00000038533 ENSMUST00000139506 Cbfa2t2 protein_coding Interval_9340 chr1 156449942 156450177 + 0 NA intron (ENSMUSG00000026600.12, intron 3 of 6) protein_coding-intron (ENSMUSG00000026600.12, intron 2 of 14) -5231 ENSMUSG00000103199.1 ENSMUSG00000103199 ENSMUST00000192072 Gm37648 TEC Interval_97260 chr2 132701535 132702844 + 0 NA intron (ENSMUSG00000044991.10, intron 1 of 1) protein_coding-intron (ENSMUSG00000044991.10, intron 2 of 2) -3666 ENSMUSG00000084839.1 ENSMUSG00000084839 ENSMUST00000147868 Gm14097 antisense Interval_27153 chr11 63412120 63414067 + 0 NA promoter-TSS (ENSMUSG00000085113.1) lincRNA-promoter-TSS (ENSMUSG00000085113.1) -76 ENSMUSG00000085113.1 ENSMUSG00000085113 ENSMUST00000151765 B130011K05Rik lincRNA Interval_128731 chr5 114970518 114973347 + 0 NA promoter-TSS (ENSMUSG00000029556.12) protein_coding-promoter-TSS (ENSMUSG00000029556.12) -838 ENSMUSG00000029556.12 ENSMUSG00000029556 ENSMUST00000184027 Hnf1a protein_coding Interval_126954 chr5 98302493 98302703 + 0 NA Intergenic Intergenic -26758 ENSMUSG00000057816.7 ENSMUSG00000057816 ENSMUST00000196339 Cfap299 protein_coding Interval_144350 chr7 24628781 24629379 + 0 NA exon (ENSMUSG00000074277.4, exon 15 of 15) protein_coding-exon (ENSMUSG00000074277.4, exon 15 of 15) -7470 ENSMUSG00000057454.5 ENSMUSG00000057454 ENSMUST00000080718 Lypd3 protein_coding Interval_46581 chr13 67360091 67361087 + 0 NA promoter-TSS (ENSMUSG00000098781.1) protein_coding-promoter-TSS (ENSMUSG00000098781.1) 16 ENSMUSG00000098905.2 ENSMUSG00000098905 ENSMUST00000081582 Zfp953 protein_coding Interval_20965 chr10 122815201 122815648 + 0 NA intron (ENSMUSG00000034613.12, intron 4 of 5) protein_coding-intron (ENSMUSG00000034613.12, intron 4 of 9) -22941 ENSMUSG00000112220.1 ENSMUSG00000112220 ENSMUST00000220013 Gm36208 antisense Interval_76469 chr17 80426723 80427595 + 0 NA intron (ENSMUSG00000024241.7, intron 10 of 19) protein_coding-intron (ENSMUSG00000024241.7, intron 10 of 21) 45795 ENSMUSG00000054901.7 ENSMUSG00000054901 ENSMUST00000226013 Arhgef33 protein_coding Interval_107421 chr3 107498452 107498906 + 0 NA intron (ENSMUSG00000027894.14, intron 1 of 1) protein_coding-intron (ENSMUSG00000027894.14, intron 2 of 11) -29974 ENSMUSG00000027894.14 ENSMUSG00000027894 ENSMUST00000166736 Slc6a17 protein_coding Interval_154632 chr8 22165864 22167875 + 0 NA promoter-TSS (ENSMUSG00000031478.16) protein_coding-promoter-TSS (ENSMUSG00000031478.16) 3300 ENSMUSG00000037725.8 ENSMUSG00000037725 ENSMUST00000211045 Ckap2 protein_coding Interval_126511 chr5 89393731 89393974 + 0 NA Intergenic Intergenic 41776 ENSMUSG00000035540.12 ENSMUSG00000035540 ENSMUST00000200534 Gc protein_coding Interval_9010 chr1 153066188 153066678 + 0 NA TTS (ENSMUSG00000099969.1) antisense-TTS (ENSMUSG00000099969.1) 23074 ENSMUSG00000099969.1 ENSMUSG00000099969 ENSMUST00000190117 Gm28960 antisense Interval_163058 chr9 14876296 14877252 + 0 NA Intergenic Intergenic 11434 ENSMUSG00000031932.14 ENSMUSG00000031932 ENSMUST00000133278 Gpr83 protein_coding Interval_133882 chr6 14063106 14064018 + 0 NA Intergenic Intergenic 18073 ENSMUSG00000108205.1 ENSMUSG00000108205 ENSMUST00000204705 Gm19252 processed_pseudogene Interval_164795 chr9 41950078 41951955 + 0 NA Intergenic Intergenic 33554 ENSMUSG00000049313.8 ENSMUSG00000049313 ENSMUST00000139133 Sorl1 protein_coding Interval_21645 chr11 3417254 3418609 + 0 NA TTS (ENSMUSG00000020448.16) protein_coding-TTS (ENSMUSG00000020448.16) 34403 ENSMUSG00000020448.16 ENSMUSG00000020448 ENSMUST00000144055 Rnf185 protein_coding Interval_53091 chr14 54409933 54410878 + 0 NA promoter-TSS (ENSMUSG00000000958.10) protein_coding-promoter-TSS (ENSMUSG00000000958.10) -203 ENSMUSG00000000958.10 ENSMUSG00000000958 ENSMUST00000195999 Slc7a7 protein_coding Interval_18525 chr10 86946329 86947975 + 0 NA exon (ENSMUSG00000035459.18, exon 18 of 69) protein_coding-exon (ENSMUSG00000035459.18, exon 18 of 69) -25064 ENSMUSG00000089656.1 ENSMUSG00000089656 ENSMUST00000162837 Gm16271 antisense Interval_138816 chr6 92164528 92164726 + 0 NA intron (ENSMUSG00000005893.14, intron 1 of 2) protein_coding-intron (ENSMUSG00000005893.14, intron 14 of 14) -18334 ENSMUSG00000108199.1 ENSMUSG00000108199 ENSMUST00000204538 Gm44249 TEC Interval_160285 chr8 107703451 107703655 + 0 NA Intergenic Intergenic -12709 ENSMUSG00000110508.1 ENSMUSG00000110508 ENSMUST00000212585 Gm8940 processed_pseudogene Interval_110665 chr4 5848479 5848673 + 0 NA intron (ENSMUSG00000049119.14, intron 3 of 4) protein_coding-intron (ENSMUSG00000049119.14, intron 3 of 4) 6911 ENSMUSG00000083232.1 ENSMUSG00000083232 ENSMUST00000120208 Gm11796 processed_pseudogene Interval_145539 chr7 35474770 35475469 + 0 NA intron (ENSMUSG00000030491.16, intron 24 of 29) protein_coding-intron (ENSMUSG00000030491.16, intron 25 of 25) 24598 ENSMUSG00000100068.1 ENSMUSG00000100068 ENSMUST00000186253 Gm18558 processed_pseudogene Interval_77923 chr18 5609906 5610121 + 0 NA intron (ENSMUSG00000024238.15, intron 1 of 2) protein_coding-intron (ENSMUSG00000024238.15, intron 1 of 7) 1917 ENSMUSG00000090078.2 ENSMUSG00000090078 ENSMUST00000162143 Gm16147 processed_pseudogene Interval_159876 chr8 104559559 104559812 + 0 NA Intergenic Intergenic -2698 ENSMUSG00000110607.1 ENSMUSG00000110607 ENSMUST00000212317 Gm45843 lincRNA Interval_66027 chr16 31036092 31036523 + 0 NA intron (ENSMUSG00000047434.14, intron 2 of 2) protein_coding-intron (ENSMUSG00000047434.14, intron 2 of 3) 33519 ENSMUSG00000047434.14 ENSMUSG00000047434 ENSMUST00000142870 Xxylt1 protein_coding Interval_174443 chrX 152336116 152337374 + 0 NA TTS (ENSMUSG00000041096.13) protein_coding-TTS (ENSMUSG00000041096.13) 5099 ENSMUSG00000041096.13 ENSMUSG00000041096 ENSMUST00000177748 Tspyl2 protein_coding Interval_24497 chr11 33733204 33733661 + 0 NA intron (ENSMUSG00000053519.17, intron 1 of 8) protein_coding-intron (ENSMUSG00000053519.17, intron 1 of 7) 27882 ENSMUSG00000087328.1 ENSMUSG00000087328 ENSMUST00000125068 Gm12120 antisense Interval_117421 chr4 123607291 123608294 + 0 NA intron (ENSMUSG00000028649.21, intron 1 of 97) protein_coding-intron (ENSMUSG00000028649.21, intron 1 of 92) 5951 ENSMUSG00000028649.21 ENSMUSG00000028649 ENSMUST00000146000 Macf1 protein_coding Interval_117002 chr4 118909600 118910604 + 0 NA Intergenic Intergenic 7363 ENSMUSG00000096705.1 ENSMUSG00000096705 ENSMUST00000071979 Olfr1329 protein_coding Interval_97479 chr2 137097681 137099563 + 0 NA intron (ENSMUSG00000027276.7, intron 5 of 25) protein_coding-intron (ENSMUSG00000027276.7, intron 5 of 25) -12673 ENSMUSG00000027276.7 ENSMUSG00000027276 ENSMUST00000133640 Jag1 protein_coding Interval_133523 chr6 6143246 6143619 + 0 NA intron (ENSMUSG00000015112.15, intron 4 of 17) protein_coding-intron (ENSMUSG00000015112.15, intron 4 of 17) 30519 ENSMUSG00000015112.15 ENSMUSG00000015112 ENSMUST00000177698 Slc25a13 protein_coding Interval_151545 chr7 123431360 123431830 + 0 NA Intergenic Intergenic 3735 ENSMUSG00000030763.7 ENSMUSG00000030763 ENSMUST00000206727 Lcmt1 protein_coding Interval_98434 chr2 152323626 152324231 + 0 NA promoter-TSS (ENSMUSG00000027466.15) protein_coding-promoter-TSS (ENSMUSG00000027466.15) -430 ENSMUSG00000027466.15 ENSMUSG00000027466 ENSMUST00000129590 Rbck1 protein_coding Interval_112019 chr4 33265001 33265826 + 0 NA intron (ENSMUSG00000040128.9, intron 1 of 1) protein_coding-intron (ENSMUSG00000040128.9, intron 1 of 1) -17838 ENSMUSG00000040128.9 ENSMUSG00000040128 ENSMUST00000137589 Pnrc1 protein_coding Interval_27408 chr11 67428267 67428578 + 0 NA Intergenic Intergenic 63637 ENSMUSG00000060180.12 ENSMUSG00000060180 ENSMUST00000181027 Myh13 protein_coding Interval_108279 chr3 123255801 123257022 + 0 NA Intergenic Intergenic -11079 ENSMUSG00000039234.11 ENSMUSG00000039234 ENSMUST00000196482 Sec24d protein_coding Interval_25329 chr11 46418306 46418646 + 0 NA Intergenic Intergenic -18485 ENSMUSG00000020397.15 ENSMUSG00000020397 ENSMUST00000133635 Med7 protein_coding Interval_34659 chr12 8446997 8447541 + 0 NA Intergenic Intergenic 7649 ENSMUSG00000112664.1 ENSMUSG00000112664 ENSMUST00000219269 Gm48076 TEC Interval_90493 chr2 30794403 30795217 + 0 NA TTS (ENSMUSG00000044320.14) protein_coding-TTS (ENSMUSG00000044320.14) 8834 ENSMUSG00000044320.14 ENSMUSG00000044320 ENSMUST00000140168 1700001O22Rik protein_coding Interval_10444 chr1 170900762 170902188 + 0 NA Intergenic Intergenic 11466 ENSMUSG00000070524.1 ENSMUSG00000070524 ENSMUST00000094337 Fcrlb protein_coding Interval_26088 chr11 54072992 54074088 + 0 NA Intergenic Intergenic -8972 ENSMUSG00000020388.12 ENSMUSG00000020388 ENSMUST00000151948 Pdlim4 protein_coding Interval_133709 chr6 9147777 9148074 + 0 NA TTS (ENSMUSG00000107851.1) processed_pseudogene-TTS (ENSMUSG00000107851.1) 1159 ENSMUSG00000107851.1 ENSMUSG00000107851 ENSMUST00000203681 Gm35736 processed_pseudogene Interval_111541 chr4 22704519 22704853 + 0 NA TTS (ENSMUSG00000080762.1) processed_pseudogene-TTS (ENSMUSG00000080762.1) 629 ENSMUSG00000080762.1 ENSMUSG00000080762 ENSMUST00000121885 Gm11879 processed_pseudogene Interval_31439 chr11 100672713 100673732 + 0 NA intron (ENSMUSG00000014198.15, intron 1 of 2) protein_coding-intron (ENSMUSG00000014198.15, intron 1 of 2) -14195 ENSMUSG00000085604.1 ENSMUSG00000085604 ENSMUST00000137154 Dhx58os antisense Interval_156467 chr8 48459852 48460233 + 0 NA intron (ENSMUSG00000031561.16, intron 2 of 26) protein_coding-intron (ENSMUSG00000031561.16, intron 2 of 28) 95271 ENSMUSG00000031561.16 ENSMUSG00000031561 ENSMUST00000211812 Tenm3 protein_coding Interval_10232 chr1 167355854 167356077 + 0 NA TTS (ENSMUSG00000026687.14) protein_coding-TTS (ENSMUSG00000026687.14) 5729 ENSMUSG00000026687.14 ENSMUSG00000026687 ENSMUST00000191715 Aldh9a1 protein_coding Interval_47566 chr13 88857787 88858024 + 0 NA intron (ENSMUSG00000034488.14, intron 1 of 5) protein_coding-intron (ENSMUSG00000034488.14, intron 1 of 9) 36417 ENSMUSG00000034488.14 ENSMUSG00000034488 ENSMUST00000043111 Edil3 protein_coding Interval_39643 chr12 91756640 91757088 + 0 NA intron (ENSMUSG00000020961.15, intron 1 of 6) protein_coding-intron (ENSMUSG00000020961.15, intron 1 of 6) 14306 ENSMUSG00000020961.15 ENSMUSG00000020961 ENSMUST00000166008 Ston2 protein_coding Interval_128597 chr5 114218921 114219183 + 0 NA intron (ENSMUSG00000042010.16, intron 16 of 40) protein_coding-intron (ENSMUSG00000042010.16, intron 27 of 51) 18873 ENSMUSG00000084243.1 ENSMUSG00000084243 ENSMUST00000119639 Gm13784 processed_pseudogene Interval_105685 chr3 88567926 88568264 + 0 NA exon (ENSMUSG00000008604.11, exon 11 of 11) protein_coding-exon (ENSMUSG00000008604.11, exon 11 of 11) 4188 ENSMUSG00000008604.11 ENSMUSG00000008604 ENSMUST00000195498 Ubqln4 protein_coding Interval_153706 chr8 4808706 4808985 + 0 NA Intergenic Intergenic -3685 ENSMUSG00000109034.1 ENSMUSG00000109034 ENSMUST00000207403 Gm44960 unprocessed_pseudogene Interval_18253 chr10 84318035 84318440 + 0 NA Intergenic Intergenic 9351 ENSMUSG00000111875.1 ENSMUSG00000111875 ENSMUST00000214125 Gm5425 processed_pseudogene Interval_75242 chr17 65233350 65233724 + 0 NA Intergenic Intergenic -64334 ENSMUSG00000117336.1 ENSMUSG00000117336 ENSMUST00000233948 Gm49865 processed_pseudogene Interval_174123 chrX 135806017 135806245 + 0 NA intron (ENSMUSG00000072964.14, intron 1 of 10) protein_coding-intron (ENSMUSG00000072964.14, intron 1 of 10) 8537 ENSMUSG00000072964.14 ENSMUSG00000072964 ENSMUST00000151989 Bhlhb9 protein_coding Interval_9059 chr1 153344542 153344982 + 0 NA Intergenic Intergenic 39330 ENSMUSG00000079138.3 ENSMUSG00000079138 ENSMUST00000110797 Gm8818 processed_pseudogene Interval_132275 chr5 143879875 143880418 + 0 NA exon (ENSMUSG00000029613.15, exon 6 of 6) protein_coding-exon (ENSMUSG00000029613.15, exon 6 of 6) 17539 ENSMUSG00000029607.14 ENSMUSG00000029607 ENSMUST00000110718 Ankrd61 protein_coding Interval_39454 chr12 87535091 87535625 + 0 NA Intergenic Intergenic -2547 ENSMUSG00000113474.1 ENSMUSG00000113474 ENSMUST00000223259 Gm48110 processed_pseudogene Interval_134245 chr6 23510857 23511655 + 0 NA intron (ENSMUSG00000017978.18, intron 8 of 29) protein_coding-intron (ENSMUSG00000017978.18, intron 7 of 29) -8490 ENSMUSG00000098877.1 ENSMUSG00000098877 ENSMUST00000185172 Gm27959 rRNA Interval_136993 chr6 65764577 65766123 + 0 NA Intergenic Intergenic 7414 ENSMUSG00000082115.2 ENSMUSG00000082115 ENSMUST00000119894 Gm15490 processed_pseudogene Interval_12749 chr10 4724756 4725242 + 0 NA intron (ENSMUSG00000019768.16, intron 3 of 7) protein_coding-intron (ENSMUSG00000019768.16, intron 2 of 8) 113406 ENSMUSG00000019768.16 ENSMUSG00000019768 ENSMUST00000137012 Esr1 protein_coding Interval_50946 chr14 20977251 20977459 + 0 NA intron (ENSMUSG00000021823.10, intron 2 of 7) protein_coding-intron (ENSMUSG00000021823.10, intron 2 of 20) 47957 ENSMUSG00000021823.10 ENSMUSG00000021823 ENSMUST00000224380 Vcl protein_coding Interval_94772 chr2 94211609 94212023 + 0 NA intron (ENSMUSG00000075020.6, intron 3 of 4) lincRNA-intron (ENSMUSG00000075020.6, intron 3 of 5) -27686 ENSMUSG00000093033.1 ENSMUSG00000093033 ENSMUST00000175292 Gm23630 miRNA Interval_82765 chr18 76929426 76930725 + 0 NA promoter-TSS (ENSMUSG00000090000.2) protein_coding-promoter-TSS (ENSMUSG00000090000.2) -51 ENSMUSG00000117732.1 ENSMUSG00000117732 ENSMUST00000142456 Gm50364 protein_coding Interval_119596 chr4 138612504 138613044 + 0 NA intron (ENSMUSG00000028753.12, intron 2 of 14) protein_coding-intron (ENSMUSG00000028753.12, intron 2 of 21) -6244 ENSMUSG00000028753.12 ENSMUSG00000028753 ENSMUST00000133319 Vwa5b1 protein_coding Interval_79987 chr18 36507538 36508942 + 0 NA intron (ENSMUSG00000024486.6, intron 3 of 5) protein_coding-intron (ENSMUSG00000024486.6, intron 3 of 5) 7127 ENSMUSG00000024486.6 ENSMUSG00000024486 ENSMUST00000236520 Hbegf protein_coding Interval_95061 chr2 103621379 103621962 + 0 NA intron (ENSMUSG00000032724.5, intron 1 of 16) protein_coding-intron (ENSMUSG00000032724.5, intron 1 of 16) 74411 ENSMUSG00000081687.1 ENSMUSG00000081687 ENSMUST00000118456 Gm13996 processed_pseudogene Interval_163308 chr9 20751371 20751953 + 0 NA Intergenic Intergenic -24725 ENSMUSG00000032172.8 ENSMUSG00000032172 ENSMUST00000215039 Olfm2 protein_coding Interval_109760 chr3 146684731 146685930 + 0 NA intron (ENSMUSG00000048652.12, intron 1 of 2) protein_coding-intron (ENSMUSG00000048652.12, intron 1 of 3) 145 ENSMUSG00000048652.12 ENSMUSG00000048652 ENSMUST00000144837 Samd13 protein_coding Interval_6598 chr1 118054196 118055001 + 0 NA Intergenic Intergenic -9520 ENSMUSG00000101590.1 ENSMUSG00000101590 ENSMUST00000186304 Gm29104 unprocessed_pseudogene Interval_48800 chr13 103400359 103400755 + 0 NA Intergenic Intergenic 3448 ENSMUSG00000095940.1 ENSMUSG00000095940 ENSMUST00000179660 Gm16416 processed_pseudogene Interval_47150 chr13 76358275 76359324 + 0 NA Intergenic Intergenic -37520 ENSMUSG00000092732.1 ENSMUSG00000092732 ENSMUST00000174991 Gm24025 miRNA Interval_112357 chr4 40815558 40816052 + 0 NA intron (ENSMUSG00000028413.13, intron 2 of 4) protein_coding-intron (ENSMUSG00000028413.13, intron 2 of 5) 34333 ENSMUSG00000096377.1 ENSMUSG00000096377 ENSMUST00000177794 Mir5123 miRNA Interval_51184 chr14 24529309 24529827 + 0 NA Intergenic Intergenic 38850 ENSMUSG00000025290.17 ENSMUSG00000025290 ENSMUST00000224699 Rps24 protein_coding Interval_50418 chr14 12778705 12779119 + 0 NA intron (ENSMUSG00000054423.14, intron 1 of 28) protein_coding-intron (ENSMUSG00000054423.14, intron 1 of 28) -8362 ENSMUSG00000114626.1 ENSMUSG00000114626 ENSMUST00000225480 Gm48266 TEC Interval_54809 chr14 75323027 75323263 + 0 NA intron (ENSMUSG00000022000.11, intron 9 of 18) protein_coding-intron (ENSMUSG00000022000.11, intron 9 of 18) -14927 ENSMUSG00000022000.11 ENSMUSG00000022000 ENSMUST00000228470 Zc3h13 protein_coding Interval_71347 chr17 22468759 22469874 + 0 NA Intergenic Intergenic 17060 ENSMUSG00000117058.1 ENSMUSG00000117058 ENSMUST00000233425 Gm49955 processed_pseudogene Interval_94520 chr2 91872223 91872877 + 0 NA intron (ENSMUSG00000040506.16, intron 11 of 17) protein_coding-intron (ENSMUSG00000040506.16, intron 10 of 16) 48378 ENSMUSG00000075036.1 ENSMUSG00000075036 ENSMUST00000099710 Gm10805 pseudogene Interval_138999 chr6 94139985 94140577 + 0 NA intron (ENSMUSG00000045095.16, intron 2 of 2) protein_coding-intron (ENSMUSG00000045095.16, intron 1 of 21) 183753 ENSMUSG00000107545.1 ENSMUSG00000107545 ENSMUST00000204466 Gm44307 processed_pseudogene Interval_116369 chr4 110383298 110383531 + 0 NA Intergenic Intergenic -95887 ENSMUSG00000028546.17 ENSMUSG00000028546 ENSMUST00000142722 Elavl4 protein_coding Interval_10547 chr1 171698669 171699652 + 0 NA intron (ENSMUSG00000015355.13, intron 2 of 2) protein_coding-intron (ENSMUSG00000015355.13, intron 2 of 2) 10849 ENSMUSG00000103883.1 ENSMUSG00000103883 ENSMUST00000194539 Gm37010 TEC Interval_25180 chr11 44806683 44806999 + 0 NA intron (ENSMUSG00000057098.14, intron 6 of 15) protein_coding-intron (ENSMUSG00000057098.14, intron 6 of 15) -144165 ENSMUSG00000085784.1 ENSMUSG00000085784 ENSMUST00000130493 Gm12158 antisense Interval_2602 chr1 41783424 41784157 + 0 NA intron (ENSMUSG00000100832.1, intron 1 of 5) lincRNA-intron (ENSMUSG00000100832.1, intron 1 of 5) -134562 ENSMUSG00000100832.1 ENSMUSG00000100832 ENSMUST00000187227 Gm29260 lincRNA Interval_154802 chr8 23453845 23454571 + 0 NA Intergenic Intergenic 42706 ENSMUSG00000031548.7 ENSMUSG00000031548 ENSMUST00000033952 Sfrp1 protein_coding Interval_14695 chr10 39106572 39107959 + 0 NA intron (ENSMUSG00000019846.11, intron 1 of 1) protein_coding-intron (ENSMUSG00000019846.11, intron 37 of 37) 1484 ENSMUSG00000019846.11 ENSMUSG00000019846 ENSMUST00000163036 Lama4 protein_coding Interval_10778 chr1 174608733 174609531 + 0 NA promoter-TSS (ENSMUSG00000028354.13) protein_coding-promoter-TSS (ENSMUSG00000028354.13) -677 ENSMUSG00000028354.13 ENSMUSG00000028354 ENSMUST00000193905 Fmn2 protein_coding Interval_152173 chr7 130386986 130387216 + 0 NA intron (ENSMUSG00000030849.18, intron 2 of 6) protein_coding-intron (ENSMUSG00000030849.18, intron 2 of 6) -32739 ENSMUSG00000082988.3 ENSMUSG00000082988 ENSMUST00000121836 Gm5903 processed_pseudogene Interval_144107 chr7 19455286 19456241 + 0 NA intron (ENSMUSG00000030397.11, intron 1 of 17) protein_coding-intron (ENSMUSG00000030397.11, intron 1 of 16) 3058 ENSMUSG00000030397.11 ENSMUSG00000030397 ENSMUST00000209011 Mark4 protein_coding Interval_110936 chr4 10559991 10560220 + 0 NA intron (ENSMUSG00000086080.7, intron 1 of 3) lincRNA-intron (ENSMUSG00000086080.7, intron 1 of 3) -20707 ENSMUSG00000081361.1 ENSMUSG00000081361 ENSMUST00000118586 Gm11813 processed_pseudogene Interval_108713 chr3 130617139 130617958 + 0 NA promoter-TSS (ENSMUSG00000019232.14) protein_coding-promoter-TSS (ENSMUSG00000019232.14) -24 ENSMUSG00000019232.14 ENSMUSG00000019232 ENSMUST00000170664 Etnppl protein_coding Interval_34186 chr11 121161484 121162292 + 0 NA TTS (ENSMUSG00000039321.1) protein_coding-TTS (ENSMUSG00000039321.1) 1617 ENSMUSG00000039321.1 ENSMUSG00000039321 ENSMUST00000039044 Uts2r protein_coding Interval_18700 chr10 89434593 89435338 + 0 NA promoter-TSS (ENSMUSG00000074802.11) protein_coding-promoter-TSS (ENSMUSG00000074802.11) -1123 ENSMUSG00000074802.11 ENSMUSG00000074802 ENSMUST00000219073 Gas2l3 protein_coding Interval_101121 chr2 178123465 178124455 + 0 NA intron (ENSMUSG00000027525.18, intron 1 of 12) protein_coding-intron (ENSMUSG00000027525.18, intron 1 of 12) -45535 ENSMUSG00000078861.8 ENSMUSG00000078861 ENSMUST00000108923 Zfp931 protein_coding Interval_172934 chrX 56640031 56640698 + 0 NA intron (ENSMUSG00000060681.15, intron 10 of 15) protein_coding-intron (ENSMUSG00000060681.15, intron 10 of 15) -5484 ENSMUSG00000060681.15 ENSMUSG00000060681 ENSMUST00000202670 Slc9a6 protein_coding Interval_90872 chr2 33108042 33108865 + 0 NA intron (ENSMUSG00000038860.15, intron 1 of 4) protein_coding-intron (ENSMUSG00000038860.15, intron 1 of 4) 49717 ENSMUSG00000038831.16 ENSMUSG00000038831 ENSMUST00000113164 Ralgps1 protein_coding Interval_155123 chr8 26819982 26820634 + 0 NA intron (ENSMUSG00000100335.2, intron 1 of 2) lincRNA-intron (ENSMUSG00000100335.2, intron 1 of 2) 39993 ENSMUSG00000110297.1 ENSMUSG00000110297 ENSMUST00000209789 Gm45647 processed_pseudogene Interval_74971 chr17 58551231 58551996 + 0 NA Intergenic Intergenic 28354 ENSMUSG00000117271.1 ENSMUSG00000117271 ENSMUST00000232830 Gm6149 processed_pseudogene Interval_107010 chr3 102935239 102936495 + 0 NA intron (ENSMUSG00000027855.13, intron 1 of 8) protein_coding-intron (ENSMUSG00000027855.13, intron 1 of 32) 223 ENSMUSG00000027855.13 ENSMUSG00000027855 ENSMUST00000199930 Sycp1 protein_coding Interval_75609 chr17 69269098 69269377 + 0 NA intron (ENSMUSG00000024044.19, intron 8 of 16) protein_coding-intron (ENSMUSG00000024044.19, intron 12 of 21) 7971 ENSMUSG00000100572.1 ENSMUSG00000100572 ENSMUST00000187090 2410021H03Rik antisense Interval_33293 chr11 115740850 115741200 + 0 NA Intergenic Intergenic 11559 ENSMUSG00000084130.1 ENSMUSG00000084130 ENSMUST00000120031 Gm11704 processed_pseudogene Interval_140261 chr6 115864681 115866194 + 0 NA intron (ENSMUSG00000030323.13, intron 3 of 29) protein_coding-intron (ENSMUSG00000030323.13, intron 3 of 28) 11849 ENSMUSG00000030323.13 ENSMUSG00000030323 ENSMUST00000155565 Ift122 protein_coding Interval_140486 chr6 118716557 118716916 + 0 NA intron (ENSMUSG00000051331.16, intron 6 of 44) protein_coding-intron (ENSMUSG00000051331.16, intron 9 of 46) -97512 ENSMUSG00000100867.1 ENSMUSG00000100867 ENSMUST00000185373 Gm18981 processed_pseudogene Interval_100185 chr2 167532115 167532576 + 0 NA Intergenic Intergenic 3097 ENSMUSG00000082687.1 ENSMUSG00000082687 ENSMUST00000120814 Gm11474 processed_pseudogene Interval_126641 chr5 91469942 91470682 + 0 NA Intergenic Intergenic -47303 ENSMUSG00000034981.9 ENSMUSG00000034981 ENSMUST00000040576 Parm1 protein_coding Interval_33014 chr11 113683194 113684857 + 0 NA promoter-TSS (ENSMUSG00000041623.17) protein_coding-promoter-TSS (ENSMUSG00000041623.17) 130 ENSMUSG00000041629.7 ENSMUSG00000041629 ENSMUST00000120194 Fam104a protein_coding Interval_116726 chr4 116894399 116895336 + 0 NA intron (ENSMUSG00000033948.3, intron 1 of 13) protein_coding-intron (ENSMUSG00000033948.3, intron 1 of 13) -9770 ENSMUSG00000088845.1 ENSMUSG00000088845 ENSMUST00000158220 Gm26355 snRNA Interval_20447 chr10 117675750 117676841 + 0 NA intron (ENSMUSG00000020183.11, intron 1 of 2) protein_coding-intron (ENSMUSG00000020183.11, intron 7 of 8) 402 ENSMUSG00000020183.11 ENSMUSG00000020183 ENSMUST00000141991 Cpm protein_coding Interval_16087 chr10 60647962 60648252 + 0 NA intron (ENSMUSG00000012819.15, intron 2 of 2) protein_coding-intron (ENSMUSG00000012819.15, intron 2 of 66) 104676 ENSMUSG00000020100.15 ENSMUSG00000020100 ENSMUST00000144989 Slc29a3 protein_coding Interval_54376 chr14 68040717 68041138 + 0 NA Intergenic Intergenic 10403 ENSMUSG00000114621.1 ENSMUSG00000114621 ENSMUST00000223853 Gm31107 lincRNA Interval_35938 chr12 32203634 32204064 + 0 NA intron (ENSMUSG00000020573.17, intron 2 of 10) protein_coding-intron (ENSMUSG00000020573.17, intron 2 of 10) 4489 ENSMUSG00000020573.17 ENSMUSG00000020573 ENSMUST00000126814 Pik3cg protein_coding Interval_18163 chr10 83119079 83120156 + 0 NA intron (ENSMUSG00000034612.7, intron 2 of 2) protein_coding-intron (ENSMUSG00000034612.7, intron 2 of 2) 22421 ENSMUSG00000090200.1 ENSMUSG00000090200 ENSMUST00000160997 1700025N21Rik antisense Interval_71255 chr17 21635857 21636313 + 0 NA TTS (ENSMUSG00000117013.1) transcribed_processed_pseudogene-TTS (ENSMUSG00000117013.1) 14389 ENSMUSG00000117070.1 ENSMUSG00000117070 ENSMUST00000233101 Gm41541 lincRNA Interval_19556 chr10 103168237 103168447 + 0 NA intron (ENSMUSG00000019892.13, intron 16 of 25) protein_coding-intron (ENSMUSG00000019892.13, intron 16 of 25) 45095 ENSMUSG00000112622.1 ENSMUSG00000112622 ENSMUST00000220380 Gm47164 TEC Interval_140661 chr6 120356895 120358323 + 0 NA promoter-TSS (ENSMUSG00000030177.14) protein_coding-promoter-TSS (ENSMUSG00000030177.14) -242 ENSMUSG00000030177.14 ENSMUSG00000030177 ENSMUST00000153435 Ccdc77 protein_coding Interval_119375 chr4 137312103 137312366 + 0 NA Intergenic Intergenic -13325 ENSMUSG00000089199.1 ENSMUSG00000089199 ENSMUST00000158574 Gm25772 snRNA Interval_76669 chr17 83337112 83337347 + 0 NA Intergenic Intergenic 48683 ENSMUSG00000094256.2 ENSMUSG00000094256 ENSMUST00000077420 Rpl21-ps7 processed_pseudogene Interval_149715 chr7 100886702 100887143 + 0 NA intron (ENSMUSG00000032875.8, intron 2 of 20) protein_coding-intron (ENSMUSG00000032875.8, intron 2 of 20) -4513 ENSMUSG00000093296.1 ENSMUSG00000093296 ENSMUST00000175555 Mir3102 miRNA Interval_8590 chr1 143622383 143622745 + 0 NA intron (ENSMUSG00000026361.9, intron 4 of 7) protein_coding-intron (ENSMUSG00000026361.9, intron 13 of 16) -18100 ENSMUSG00000033849.3 ENSMUSG00000033849 ENSMUST00000038252 B3galt2 protein_coding Interval_35883 chr12 31587262 31587574 + 0 NA Intergenic Intergenic 14331 ENSMUSG00000020650.15 ENSMUSG00000020650 ENSMUST00000218543 Bcap29 protein_coding Interval_115307 chr4 95723761 95724040 + 0 NA intron (ENSMUSG00000028573.18, intron 5 of 5) protein_coding-intron (ENSMUSG00000028573.18, intron 6 of 10) -161741 ENSMUSG00000093492.1 ENSMUSG00000093492 ENSMUST00000177219 Gm20651 processed_pseudogene Interval_147421 chr7 66819914 66820445 + 0 NA intron (ENSMUSG00000030510.11, intron 9 of 9) protein_coding-intron (ENSMUSG00000030510.11, intron 10 of 10) -19556 ENSMUSG00000058145.16 ENSMUSG00000058145 ENSMUST00000154103 Adamts17 protein_coding Interval_51112 chr14 23428776 23429508 + 0 NA intron (ENSMUSG00000063142.15, intron 17 of 27) protein_coding-intron (ENSMUSG00000063142.15, intron 17 of 28) -90520 ENSMUSG00000114751.1 ENSMUSG00000114751 ENSMUST00000224401 5430425E15Rik TEC Interval_100251 chr2 167977500 167977913 + 0 NA exon (ENSMUSG00000027540.13, exon 9 of 9) protein_coding-exon (ENSMUSG00000027540.13, exon 9 of 9) 13641 ENSMUSG00000074577.9 ENSMUSG00000074577 ENSMUST00000142702 Ripor3 protein_coding Interval_83758 chr19 4424675 4426287 + 0 NA TTS (ENSMUSG00000041845.11) protein_coding-TTS (ENSMUSG00000041845.11) -13842 ENSMUSG00000087132.8 ENSMUSG00000087132 ENSMUST00000136632 A930001C03Rik processed_transcript Interval_47313 chr13 81151968 81152334 + 0 NA intron (ENSMUSG00000069170.14, intron 5 of 7) protein_coding-intron (ENSMUSG00000069170.14, intron 87 of 89) -64587 ENSMUSG00000114836.1 ENSMUSG00000114836 ENSMUST00000224010 Gm18517 transcribed_processed_pseudogene Interval_142887 chr6 146719510 146720104 + 0 NA Intergenic Intergenic -5505 ENSMUSG00000001630.13 ENSMUSG00000001630 ENSMUST00000203318 Stk38l protein_coding Interval_11507 chr1 182322187 182322950 + 0 NA intron (ENSMUSG00000047539.9, intron 2 of 3) protein_coding-intron (ENSMUSG00000047539.9, intron 3 of 4) 19003 ENSMUSG00000047539.9 ENSMUSG00000047539 ENSMUST00000194213 Fbxo28 protein_coding Interval_90521 chr2 30932127 30932366 + 0 NA Intergenic Intergenic -2383 ENSMUSG00000050737.13 ENSMUSG00000050737 ENSMUST00000126588 Ptges protein_coding Interval_673 chr1 9772881 9773264 + 0 NA intron (ENSMUSG00000097893.8, intron 3 of 4) antisense-intron (ENSMUSG00000097893.8, intron 2 of 6) 24446 ENSMUSG00000097893.8 ENSMUSG00000097893 ENSMUST00000189322 1700034P13Rik antisense Interval_59744 chr15 59003625 59005304 + 0 NA intron (ENSMUSG00000022353.10, intron 3 of 14) protein_coding-intron (ENSMUSG00000022353.10, intron 3 of 14) 20328 ENSMUSG00000115062.1 ENSMUSG00000115062 ENSMUST00000226216 4930544F09Rik antisense Interval_42822 chr13 20042111 20042463 + 0 NA Intergenic Intergenic -46483 ENSMUSG00000050243.6 ENSMUSG00000050243 ENSMUST00000091762 Gm5446 processed_pseudogene Interval_76538 chr17 80842097 80842821 + 0 NA Intergenic Intergenic -54334 ENSMUSG00000112121.1 ENSMUSG00000112121 ENSMUST00000220067 C230072F16Rik lincRNA Interval_21238 chr10 127369968 127370621 + 0 NA exon (ENSMUSG00000025405.9, exon 1 of 2) protein_coding-exon (ENSMUSG00000025405.9, exon 1 of 2) 137 ENSMUSG00000025405.9 ENSMUSG00000025405 ENSMUST00000026472 Inhbc protein_coding Interval_155593 chr8 34947933 34948794 + 0 NA intron (ENSMUSG00000031529.5, intron 1 of 26) protein_coding-intron (ENSMUSG00000031529.5, intron 1 of 26) -18070 ENSMUSG00000054247.6 ENSMUSG00000054247 ENSMUST00000210951 Gm9939 bidirectional_promoter_lncRNA Interval_161885 chr8 123442879 123443617 + 0 NA promoter-TSS (ENSMUSG00000001482.15) protein_coding-promoter-TSS (ENSMUSG00000001482.15) 19721 ENSMUSG00000001482.15 ENSMUSG00000001482 ENSMUST00000212827 Def8 protein_coding Interval_98047 chr2 147180703 147181886 + 0 NA intron (ENSMUSG00000027434.11, intron 2 of 2) protein_coding-intron (ENSMUSG00000027434.11, intron 2 of 2) -2789 ENSMUSG00000086509.2 ENSMUSG00000086509 ENSMUST00000136998 Nkx2-2os antisense Interval_82274 chr18 69864135 69865191 + 0 NA Intergenic Intergenic 46061 ENSMUSG00000118028.1 ENSMUSG00000118028 ENSMUST00000235804 Gm50215 lincRNA Interval_6997 chr1 121628231 121629697 + 0 NA Intergenic Intergenic 16885 ENSMUSG00000102006.1 ENSMUSG00000102006 ENSMUST00000185259 Gm28591 processed_pseudogene Interval_85957 chr19 34214356 34214609 + 0 NA intron (ENSMUSG00000024776.18, intron 1 of 4) protein_coding-intron (ENSMUSG00000024776.18, intron 1 of 10) 22253 ENSMUSG00000024776.18 ENSMUSG00000024776 ENSMUST00000130756 Stambpl1 protein_coding Interval_58200 chr15 30682620 30683460 + 0 NA promoter-TSS (ENSMUSG00000022240.10) protein_coding-promoter-TSS (ENSMUSG00000022240.10) -56419 ENSMUSG00000115337.1 ENSMUSG00000115337 ENSMUST00000228499 4930570B17Rik antisense Interval_27122 chr11 63131415 63133298 + 0 NA promoter-TSS (ENSMUSG00000018217.12) protein_coding-promoter-TSS (ENSMUSG00000018217.12) -447 ENSMUSG00000018217.12 ENSMUSG00000018217 ENSMUST00000108700 Pmp22 protein_coding Interval_90167 chr2 28692614 28692852 + 0 NA TTS (ENSMUSG00000026809.15) protein_coding-TTS (ENSMUSG00000026809.15) 6941 ENSMUSG00000026809.15 ENSMUSG00000026809 ENSMUST00000145014 Spaca9 protein_coding Interval_49842 chr13 117005912 117006133 + 0 NA intron (ENSMUSG00000021725.9, intron 2 of 24) protein_coding-intron (ENSMUSG00000021725.9, intron 3 of 26) 19251 ENSMUSG00000021725.9 ENSMUSG00000021725 ENSMUST00000223833 Parp8 protein_coding Interval_99018 chr2 156698394 156698659 + 0 NA intron (ENSMUSG00000061689.15, intron 2 of 12) protein_coding-intron (ENSMUSG00000061689.15, intron 2 of 12) 22383 ENSMUSG00000086638.7 ENSMUSG00000086638 ENSMUST00000130089 4930405A21Rik processed_transcript Interval_138087 chr6 85074600 85076707 + 0 NA promoter-TSS (ENSMUSG00000081669.1) processed_pseudogene-promoter-TSS (ENSMUSG00000081669.1) -539 ENSMUSG00000081669.1 ENSMUSG00000081669 ENSMUST00000119728 Npm3-ps1 processed_pseudogene Interval_72344 chr17 29326330 29327490 + 0 NA TTS (ENSMUSG00000024011.17) protein_coding-TTS (ENSMUSG00000024011.17) -4493 ENSMUSG00000117592.1 ENSMUSG00000117592 ENSMUST00000234239 Gm46603 antisense Interval_56199 chr14 112114272 112114489 + 0 NA Intergenic Intergenic -83142 ENSMUSG00000115558.1 ENSMUSG00000115558 ENSMUST00000227711 Gm49000 TEC Interval_50759 chr14 19200947 19201318 + 0 NA Intergenic Intergenic 41437 ENSMUSG00000091557.2 ENSMUSG00000091557 ENSMUST00000171982 Gm8584 unprocessed_pseudogene Interval_110724 chr4 7201631 7202283 + 0 NA Intergenic Intergenic -162443 ENSMUSG00000083023.1 ENSMUSG00000083023 ENSMUST00000121663 Gm11804 processed_pseudogene Interval_39642 chr12 91751843 91752222 + 0 NA intron (ENSMUSG00000020961.15, intron 1 of 6) protein_coding-intron (ENSMUSG00000020961.15, intron 1 of 6) 19138 ENSMUSG00000020961.15 ENSMUSG00000020961 ENSMUST00000166008 Ston2 protein_coding Interval_168818 chr9 87475702 87475954 + 0 NA Intergenic Intergenic -22284 ENSMUSG00000102683.1 ENSMUSG00000102683 ENSMUST00000193859 Gm37375 TEC Interval_18623 chr10 88618754 88618982 + 0 NA Intergenic Intergenic -13843 ENSMUSG00000020061.18 ENSMUSG00000020061 ENSMUST00000156573 Mybpc1 protein_coding Interval_1745 chr1 33487715 33488250 + 0 NA intron (ENSMUSG00000026134.11, intron 4 of 5) protein_coding-intron (ENSMUSG00000026134.11, intron 10 of 13) 5881 ENSMUSG00000101682.1 ENSMUSG00000101682 ENSMUST00000185489 Gm29228 processed_pseudogene Interval_59674 chr15 57823064 57825042 + 0 NA intron (ENSMUSG00000071757.10, intron 3 of 3) protein_coding-intron (ENSMUSG00000071757.10, intron 3 of 3) 66341 ENSMUSG00000022365.6 ENSMUSG00000022365 ENSMUST00000226911 Derl1 protein_coding Interval_3261 chr1 55223521 55223718 + 0 NA TTS (ENSMUSG00000025978.14) protein_coding-TTS (ENSMUSG00000025978.14) -2679 ENSMUSG00000097649.2 ENSMUSG00000097649 ENSMUST00000209801 Gm10561 antisense Interval_33075 chr11 114202604 114202820 + 0 NA Intergenic Intergenic 4454 ENSMUSG00000078600.1 ENSMUSG00000078600 ENSMUST00000106604 1700092K14Rik processed_transcript Interval_92770 chr2 65328799 65329008 + 0 NA intron (ENSMUSG00000061171.15, intron 10 of 11) protein_coding-intron (ENSMUSG00000061171.15, intron 10 of 11) -31534 ENSMUSG00000080766.1 ENSMUSG00000080766 ENSMUST00000121329 Gm13593 processed_pseudogene Interval_142121 chr6 137404250 137404560 + 0 NA intron (ENSMUSG00000030223.14, intron 12 of 25) protein_coding-intron (ENSMUSG00000030223.14, intron 12 of 26) -6354 ENSMUSG00000030223.14 ENSMUSG00000030223 ENSMUST00000203127 Ptpro protein_coding Interval_75469 chr17 66877853 66878395 + 0 NA intron (ENSMUSG00000033278.10, intron 14 of 19) protein_coding-intron (ENSMUSG00000033278.10, intron 15 of 32) 15884 ENSMUSG00000117224.1 ENSMUSG00000117224 ENSMUST00000233778 Gm49940 processed_pseudogene Interval_102714 chr3 30545150 30546916 + 0 NA intron (ENSMUSG00000027684.16, intron 2 of 8) protein_coding-intron (ENSMUSG00000027684.16, intron 2 of 8) 16096 ENSMUSG00000104243.1 ENSMUSG00000104243 ENSMUST00000195484 Gm38153 processed_pseudogene Interval_138625 chr6 90526624 90526864 + 0 NA intron (ENSMUSG00000030088.15, intron 1 of 2) protein_coding-intron (ENSMUSG00000030088.15, intron 1 of 2) 13442 ENSMUSG00000108271.1 ENSMUSG00000108271 ENSMUST00000204492 Gm44236 TEC Interval_137466 chr6 72635035 72636834 + 0 NA promoter-TSS (ENSMUSG00000072999.9) antisense-promoter-TSS (ENSMUSG00000072999.9) 2621 ENSMUSG00000102577.1 ENSMUSG00000102577 ENSMUST00000195777 Gm37969 TEC Interval_1168 chr1 16503439 16504021 + 0 NA intron (ENSMUSG00000025920.19, intron 2 of 12) protein_coding-intron (ENSMUSG00000025920.19, intron 2 of 12) 15576 ENSMUSG00000025920.19 ENSMUSG00000025920 ENSMUST00000144138 Stau2 protein_coding Interval_167554 chr9 70432987 70433920 + 0 NA intron (ENSMUSG00000032217.13, intron 11 of 14) protein_coding-intron (ENSMUSG00000032217.13, intron 11 of 14) -11906 ENSMUSG00000032218.7 ENSMUSG00000032218 ENSMUST00000034742 Ccnb2 protein_coding Interval_38158 chr12 76027611 76028335 + 0 NA TTS (ENSMUSG00000063450.14) protein_coding-TTS (ENSMUSG00000063450.14) 118870 ENSMUSG00000092922.1 ENSMUSG00000092922 ENSMUST00000175181 Mir5101 miRNA Interval_64588 chr16 13532590 13533259 + 0 NA Intergenic Intergenic -1373 ENSMUSG00000077488.1 ENSMUSG00000077488 ENSMUST00000104300 Gm25276 snoRNA Interval_129191 chr5 118093269 118093808 + 0 NA intron (ENSMUSG00000032867.8, intron 6 of 7) protein_coding-intron (ENSMUSG00000032867.8, intron 6 of 10) 28178 ENSMUSG00000029360.3 ENSMUSG00000029360 ENSMUST00000031305 Gm9754 antisense Interval_57055 chr15 5174754 5175634 + 0 NA exon (ENSMUSG00000087532.1, exon 2 of 2) antisense-exon (ENSMUSG00000087532.1, exon 2 of 2) 10529 ENSMUSG00000087532.1 ENSMUSG00000087532 ENSMUST00000150079 Gm15938 antisense Interval_81757 chr18 64445173 64445894 + 0 NA Intergenic Intergenic 4156 ENSMUSG00000060096.5 ENSMUSG00000060096 ENSMUST00000072796 Amd-ps3 processed_pseudogene Interval_8978 chr1 152864155 152864455 + 0 NA intron (ENSMUSG00000042772.15, intron 4 of 22) protein_coding-intron (ENSMUSG00000042772.15, intron 4 of 22) -15385 ENSMUSG00000042772.15 ENSMUSG00000042772 ENSMUST00000188937 Smg7 protein_coding Interval_10950 chr1 177479347 177479711 + 0 NA Intergenic Intergenic 12151 ENSMUSG00000103043.1 ENSMUSG00000103043 ENSMUST00000193447 Gm37306 lincRNA Interval_48054 chr13 95603944 95604855 + 0 NA exon (ENSMUSG00000048376.6, exon 2 of 2) protein_coding-exon (ENSMUSG00000048376.6, exon 2 of 2) 14088 ENSMUSG00000048376.6 ENSMUSG00000048376 ENSMUST00000059193 F2r protein_coding Interval_31140 chr11 98386497 98387378 + 0 NA intron (ENSMUSG00000038216.7, intron 1 of 1) protein_coding-intron (ENSMUSG00000038216.7, intron 1 of 2) 225 ENSMUSG00000038216.7 ENSMUSG00000038216 ENSMUST00000124527 Pnmt protein_coding Interval_59796 chr15 59346320 59346519 + 0 NA intron (ENSMUSG00000022350.7, intron 7 of 18) protein_coding-intron (ENSMUSG00000022350.7, intron 17 of 28) 6110 ENSMUSG00000022350.7 ENSMUSG00000022350 ENSMUST00000022976 Washc5 protein_coding Interval_78659 chr18 16548949 16549220 + 0 NA Intergenic Intergenic -179649 ENSMUSG00000085575.1 ENSMUSG00000085575 ENSMUST00000149095 Gm15485 antisense Interval_61999 chr15 85795425 85795870 + 0 NA intron (ENSMUSG00000022383.13, intron 6 of 7) protein_coding-intron (ENSMUSG00000022383.13, intron 6 of 7) 16012 ENSMUSG00000064284.12 ENSMUSG00000064284 ENSMUST00000154814 Cdpf1 protein_coding Interval_5691 chr1 90956316 90957165 + 0 NA Intergenic Intergenic 3632 ENSMUSG00000090550.2 ENSMUSG00000090550 ENSMUST00000166281 Prlh protein_coding Interval_1686 chr1 31103066 31104154 + 0 NA intron (ENSMUSG00000086727.8, intron 3 of 5) protein_coding-intron (ENSMUSG00000086727.8, intron 3 of 5) 19252 ENSMUSG00000098529.1 ENSMUSG00000098529 ENSMUST00000184868 Gm27362 rRNA Interval_90314 chr2 29732570 29733102 + 0 NA exon (ENSMUSG00000039844.20, exon 18 of 26) protein_coding-exon (ENSMUSG00000039844.20, exon 18 of 26) 5829 ENSMUSG00000048316.3 ENSMUSG00000048316 ENSMUST00000051212 Gm9823 pseudogene Interval_139775 chr6 108605168 108605681 + 0 NA intron (ENSMUSG00000087341.4, intron 3 of 6) antisense-intron (ENSMUSG00000087341.4, intron 3 of 6) 8571 ENSMUSG00000087341.4 ENSMUSG00000087341 ENSMUST00000204759 0610040F04Rik antisense Interval_5541 chr1 89688996 89689754 + 0 NA intron (ENSMUSG00000055013.16, intron 9 of 16) protein_coding-intron (ENSMUSG00000055013.16, intron 9 of 17) 4573 ENSMUSG00000088775.1 ENSMUSG00000088775 ENSMUST00000158150 Gm26037 misc_RNA Interval_173580 chrX 99859235 99859430 + 0 NA Intergenic Intergenic 38311 ENSMUSG00000071719.2 ENSMUSG00000071719 ENSMUST00000096363 Tmem28 protein_coding Interval_145768 chr7 38167065 38168219 + 0 NA Intergenic Intergenic 9029 ENSMUSG00000089230.1 ENSMUSG00000089230 ENSMUST00000158605 Gm22203 snRNA Interval_145422 chr7 34668743 34669924 + 0 NA intron (ENSMUSG00000087127.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000087127.1, intron 1 of 1) 4666 ENSMUSG00000087127.1 ENSMUSG00000087127 ENSMUST00000126294 Gm12756 lincRNA Interval_94894 chr2 101119778 101120302 + 0 NA Intergenic Intergenic -450584 ENSMUSG00000093614.1 ENSMUSG00000093614 ENSMUST00000177431 Gm20693 processed_pseudogene Interval_56891 chr14 122900851 122901398 + 0 NA intron (ENSMUSG00000041625.15, intron 1 of 2) protein_coding-intron (ENSMUSG00000041625.15, intron 1 of 2) -11951 ENSMUSG00000075463.3 ENSMUSG00000075463 ENSMUST00000162218 4930594M22Rik processed_transcript Interval_92343 chr2 59148880 59149446 + 0 NA promoter-TSS (ENSMUSG00000084250.1) processed_pseudogene-promoter-TSS (ENSMUSG00000084250.1) -540 ENSMUSG00000084250.1 ENSMUSG00000084250 ENSMUST00000118185 Gm13550 processed_pseudogene Interval_160371 chr8 108790418 108790748 + 0 NA intron (ENSMUSG00000038872.10, intron 1 of 9) protein_coding-intron (ENSMUSG00000038872.10, intron 1 of 9) 52990 ENSMUSG00000104292.1 ENSMUSG00000104292 ENSMUST00000191614 Gm38042 TEC Interval_139407 chr6 99896583 99897143 + 0 NA promoter-TSS (ENSMUSG00000107204.1) lincRNA-promoter-TSS (ENSMUSG00000107204.1) -18 ENSMUSG00000107204.1 ENSMUSG00000107204 ENSMUST00000201580 Gm43067 lincRNA Interval_132696 chr5 147221274 147222693 + 0 NA Intergenic Intergenic -21730 ENSMUSG00000077735.1 ENSMUSG00000077735 ENSMUST00000104547 Gm24556 snoRNA Interval_170705 chr9 110199093 110199353 + 0 NA intron (ENSMUSG00000032481.17, intron 21 of 24) protein_coding-intron (ENSMUSG00000032481.17, intron 21 of 27) -37171 ENSMUSG00000032481.17 ENSMUSG00000032481 ENSMUST00000200426 Smarcc1 protein_coding Interval_77709 chr17 94552922 94553845 + 0 NA Intergenic Intergenic -54802 ENSMUSG00000117476.1 ENSMUSG00000117476 ENSMUST00000234959 Gm9416 processed_pseudogene Interval_113480 chr4 55288389 55288939 + 0 NA Intergenic Intergenic -6384 ENSMUSG00000081542.1 ENSMUSG00000081542 ENSMUST00000119620 Gm12512 processed_pseudogene Interval_147915 chr7 75520741 75521998 + 0 NA intron (ENSMUSG00000066406.16, intron 1 of 3) protein_coding-intron (ENSMUSG00000066406.16, intron 1 of 36) 36508 ENSMUSG00000108560.1 ENSMUSG00000108560 ENSMUST00000205567 Gm44695 TEC Interval_110641 chr4 5662266 5663453 + 0 NA intron (ENSMUSG00000049119.14, intron 1 of 1) protein_coding-intron (ENSMUSG00000049119.14, intron 1 of 2) 24943 ENSMUSG00000077392.1 ENSMUSG00000077392 ENSMUST00000104204 Gm24337 snoRNA Interval_106470 chr3 96557132 96558888 + 0 NA promoter-TSS (ENSMUSG00000038393.14) protein_coding-promoter-TSS (ENSMUSG00000038393.14) -1501 ENSMUSG00000038393.14 ENSMUSG00000038393 ENSMUST00000128221 Txnip protein_coding Interval_153286 chr7 143295302 143297257 + 0 NA exon (ENSMUSG00000101609.2, exon 1 of 1) antisense-exon (ENSMUSG00000101609.2, exon 1 of 1) 270 ENSMUSG00000101609.2 ENSMUSG00000101609 ENSMUST00000185789 Kcnq1ot1 antisense Interval_100749 chr2 172320517 172321505 + 0 NA Intergenic Intergenic -3323 ENSMUSG00000085905.1 ENSMUSG00000085905 ENSMUST00000136315 Gm14273 antisense Interval_118829 chr4 133928256 133929617 + 0 NA Intergenic Intergenic 38955 ENSMUSG00000003038.15 ENSMUSG00000003038 ENSMUST00000136859 Hmgn2 protein_coding Interval_36904 chr12 55075230 55075540 + 0 NA intron (ENSMUSG00000062198.5, intron 1 of 5) protein_coding-intron (ENSMUSG00000062198.5, intron 1 of 7) 4719 ENSMUSG00000062198.5 ENSMUSG00000062198 ENSMUST00000156852 2700097O09Rik protein_coding Interval_24237 chr11 31699613 31699879 + 0 NA TTS (ENSMUSG00000103635.1) TEC-TTS (ENSMUSG00000103635.1) 1098 ENSMUSG00000103635.1 ENSMUSG00000103635 ENSMUST00000192490 Gm38061 TEC Interval_83204 chr18 82752924 82753940 + 0 NA Intergenic Intergenic -5286 ENSMUSG00000118085.1 ENSMUSG00000118085 ENSMUST00000236831 Gm50356 lincRNA Interval_4706 chr1 77460358 77461330 + 0 NA intron (ENSMUSG00000026235.14, intron 2 of 15) protein_coding-intron (ENSMUSG00000026235.14, intron 3 of 17) 35924 ENSMUSG00000099141.1 ENSMUSG00000099141 ENSMUST00000184495 Mir6352 miRNA Interval_120713 chr4 150236462 150237763 + 0 NA promoter-TSS (ENSMUSG00000063524.13) protein_coding-promoter-TSS (ENSMUSG00000063524.13) 9077 ENSMUSG00000082140.1 ENSMUSG00000082140 ENSMUST00000117930 Gm13094 processed_pseudogene Interval_83378 chr18 84707950 84709171 + 0 NA Intergenic Intergenic -4016 ENSMUSG00000118152.1 ENSMUSG00000118152 ENSMUST00000237194 Gm2390 processed_pseudogene Interval_108613 chr3 129573152 129575850 + 0 NA intron (ENSMUSG00000041220.10, intron 1 of 2) protein_coding-intron (ENSMUSG00000041220.10, intron 2 of 4) 36360 ENSMUSG00000106092.1 ENSMUSG00000106092 ENSMUST00000200283 Gm43072 TEC Interval_168002 chr9 75355419 75355949 + 0 NA Intergenic Intergenic 7926 ENSMUSG00000032191.6 ENSMUSG00000032191 ENSMUST00000034709 Bcl2l10 protein_coding Interval_43191 chr13 24982786 24983017 + 0 NA intron (ENSMUSG00000021340.13, intron 21 of 25) protein_coding-intron (ENSMUSG00000021340.13, intron 21 of 25) 11898 ENSMUSG00000021339.4 ENSMUSG00000021339 ENSMUST00000224894 Mrs2 protein_coding Interval_104047 chr3 57666960 57667594 + 0 NA exon (ENSMUSG00000074591.8, exon 4 of 4) protein_coding-exon (ENSMUSG00000074591.8, exon 4 of 4) -11698 ENSMUSG00000105389.1 ENSMUSG00000105389 ENSMUST00000198619 BB187690 TEC Interval_170947 chr9 113095364 113095877 + 0 NA intron (ENSMUSG00000110996.1, intron 2 of 2) lincRNA-intron (ENSMUSG00000110996.1, intron 5 of 6) 27409 ENSMUSG00000110996.1 ENSMUSG00000110996 ENSMUST00000214620 Gm36251 lincRNA Interval_144507 chr7 25559348 25559778 + 0 NA intron (ENSMUSG00000053714.8, intron 6 of 6) antisense-intron (ENSMUSG00000053714.8, intron 6 of 6) 18235 ENSMUSG00000108579.1 ENSMUSG00000108579 ENSMUST00000205635 Gm29918 lincRNA Interval_83250 chr18 83000271 83002269 + 0 NA intron (ENSMUSG00000058881.13, intron 5 of 5) protein_coding-intron (ENSMUSG00000058881.13, intron 5 of 5) -10633 ENSMUSG00000118094.1 ENSMUSG00000118094 ENSMUST00000236941 AC142100.1 processed_transcript Interval_77185 chr17 87192908 87195613 + 0 NA intron (ENSMUSG00000117384.1, intron 1 of 3) lincRNA-intron (ENSMUSG00000117384.1, intron 1 of 3) 682 ENSMUSG00000117384.1 ENSMUSG00000117384 ENSMUST00000234580 C330024C12Rik lincRNA Interval_167343 chr9 67607067 67608630 + 0 NA Intergenic Intergenic -92333 ENSMUSG00000111819.1 ENSMUSG00000111819 ENSMUST00000216655 Gm47110 processed_pseudogene Interval_124172 chr5 38882415 38882627 + 0 NA Intergenic Intergenic -5709 ENSMUSG00000039315.15 ENSMUSG00000039315 ENSMUST00000171633 Clnk protein_coding Interval_34104 chr11 120662890 120664332 + 0 NA Intergenic Intergenic -2436 ENSMUSG00000042988.10 ENSMUSG00000042988 ENSMUST00000150458 Notum protein_coding Interval_149532 chr7 99380583 99382307 + 0 NA promoter-TSS (ENSMUSG00000035314.10) protein_coding-promoter-TSS (ENSMUSG00000035314.10) -28342 ENSMUSG00000070436.12 ENSMUSG00000070436 ENSMUST00000208292 Serpinh1 protein_coding Interval_98232 chr2 150256920 150258075 + 0 NA promoter-TSS (ENSMUSG00000079008.2) protein_coding-promoter-TSS (ENSMUSG00000079008.2) -20 ENSMUSG00000079008.2 ENSMUSG00000079008 ENSMUST00000109922 Gm14124 protein_coding Interval_125249 chr5 65667659 65668649 + 0 NA intron (ENSMUSG00000029202.12, intron 2 of 32) protein_coding-intron (ENSMUSG00000029202.12, intron 2 of 31) 6006 ENSMUSG00000107158.1 ENSMUSG00000107158 ENSMUST00000202644 Gm42728 TEC Interval_133913 chr6 15409928 15410102 + 0 NA intron (ENSMUSG00000029563.16, intron 13 of 14) protein_coding-intron (ENSMUSG00000029563.16, intron 11 of 16) 5034 ENSMUSG00000093317.1 ENSMUSG00000093317 ENSMUST00000175576 Gm25470 miRNA Interval_158918 chr8 87943586 87944628 + 0 NA promoter-TSS (ENSMUSG00000045333.15) protein_coding-promoter-TSS (ENSMUSG00000045333.15) 9755 ENSMUSG00000045333.15 ENSMUSG00000045333 ENSMUST00000173092 Zfp423 protein_coding Interval_101347 chr2 180659282 180660170 + 0 NA exon (ENSMUSG00000038914.15, exon 16 of 16) protein_coding-exon (ENSMUSG00000038914.15, exon 16 of 16) -17137 ENSMUSG00000038932.13 ENSMUSG00000038932 ENSMUST00000131881 Tcfl5 protein_coding Interval_98910 chr2 155955829 155957018 + 0 NA promoter-TSS (ENSMUSG00000038241.16) protein_coding-promoter-TSS (ENSMUSG00000038241.16) -11056 ENSMUSG00000038259.4 ENSMUSG00000038259 ENSMUST00000040162 Gdf5 protein_coding Interval_41757 chr12 118739003 118739209 + 0 NA Intergenic Intergenic -6051 ENSMUSG00000113546.1 ENSMUSG00000113546 ENSMUST00000223539 Gm18441 processed_pseudogene Interval_62013 chr15 85878730 85879901 + 0 NA promoter-TSS (ENSMUSG00000022386.12) protein_coding-promoter-TSS (ENSMUSG00000022386.12) -99 ENSMUSG00000022386.12 ENSMUSG00000022386 ENSMUST00000159730 Trmu protein_coding Interval_84545 chr19 12572890 12574077 + 0 NA promoter-TSS (ENSMUSG00000024691.13) protein_coding-promoter-TSS (ENSMUSG00000024691.13) -4657 ENSMUSG00000084836.1 ENSMUSG00000084836 ENSMUST00000139251 Gm16274 processed_pseudogene Interval_17935 chr10 80897687 80898367 + 0 NA exon (ENSMUSG00000059406.8, exon 16 of 18) protein_coding-exon (ENSMUSG00000059406.8, exon 16 of 18) 2758 ENSMUSG00000020219.7 ENSMUSG00000020219 ENSMUST00000218149 Timm13 protein_coding Interval_172070 chrX 5652763 5653247 + 0 NA Intergenic Intergenic -12367 ENSMUSG00000082270.1 ENSMUSG00000082270 ENSMUST00000119490 Gm14375 processed_pseudogene Interval_139300 chr6 98104584 98105789 + 0 NA Intergenic Intergenic -16610 ENSMUSG00000107902.1 ENSMUSG00000107902 ENSMUST00000205146 Gm32592 antisense Interval_29400 chr11 83745797 83746066 + 0 NA Intergenic Intergenic -1009 ENSMUSG00000051748.2 ENSMUSG00000051748 ENSMUST00000070832 Wfdc21 protein_coding Interval_3704 chr1 61373575 61373784 + 0 NA Intergenic Intergenic -4753 ENSMUSG00000085447.1 ENSMUSG00000085447 ENSMUST00000141000 9530026F06Rik lincRNA Interval_9368 chr1 156613875 156614520 + 0 NA intron (ENSMUSG00000026596.13, intron 1 of 2) protein_coding-intron (ENSMUSG00000026596.13, intron 1 of 11) -1726 ENSMUSG00000026596.13 ENSMUSG00000026596 ENSMUST00000190749 Abl2 protein_coding Interval_45079 chr13 51911302 51912611 + 0 NA Intergenic Intergenic -61258 ENSMUSG00000097495.1 ENSMUSG00000097495 ENSMUST00000181851 Gm26651 lincRNA Interval_61533 chr15 82211559 82213136 + 0 NA exon (ENSMUSG00000096883.2, exon 1 of 4) protein_coding-exon (ENSMUSG00000096883.2, exon 1 of 4) -2407 ENSMUSG00000096883.2 ENSMUSG00000096883 ENSMUST00000229543 Shisa8 protein_coding Interval_89546 chr2 22338156 22339703 + 0 NA intron (ENSMUSG00000025716.14, intron 12 of 17) protein_coding-intron (ENSMUSG00000025716.14, intron 13 of 33) 71802 ENSMUSG00000082516.1 ENSMUSG00000082516 ENSMUST00000121055 Gm13342 processed_pseudogene Interval_129710 chr5 121904837 121906014 + 0 NA intron (ENSMUSG00000042589.18, intron 2 of 20) protein_coding-intron (ENSMUSG00000042589.18, intron 4 of 22) -39362 ENSMUSG00000042589.18 ENSMUSG00000042589 ENSMUST00000125267 Cux2 protein_coding Interval_95686 chr2 114144969 114145963 + 0 NA intron (ENSMUSG00000040383.16, intron 14 of 17) protein_coding-intron (ENSMUSG00000040383.16, intron 14 of 34) 5104 ENSMUSG00000098464.1 ENSMUSG00000098464 ENSMUST00000184524 Mir7002 miRNA Interval_139353 chr6 99265782 99266794 + 0 NA intron (ENSMUSG00000030067.17, intron 3 of 3) protein_coding-intron (ENSMUSG00000030067.17, intron 1 of 3) 122211 ENSMUSG00000093559.1 ENSMUSG00000093559 ENSMUST00000177278 Gm20705 sense_intronic Interval_21819 chr11 4563727 4564329 + 0 NA exon (ENSMUSG00000081974.3, exon 1 of 1) transcribed_processed_pseudogene-exon (ENSMUSG00000081974.3, exon 1 of 1) 2248 ENSMUSG00000081974.3 ENSMUSG00000081974 ENSMUST00000122068 Gm11960 transcribed_processed_pseudogene Interval_101705 chr3 9048664 9050005 + 0 NA Intergenic Intergenic -1842 ENSMUSG00000103461.1 ENSMUSG00000103461 ENSMUST00000193974 Gm37616 processed_pseudogene Interval_8001 chr1 135160755 135162341 + 0 NA exon (ENSMUSG00000026424.8, exon 2 of 2) protein_coding-exon (ENSMUSG00000026424.8, exon 2 of 2) 6133 ENSMUSG00000026424.8 ENSMUSG00000026424 ENSMUST00000027682 Gpr37l1 protein_coding Interval_140851 chr6 122333317 122333592 + 0 NA TTS (ENSMUSG00000040669.14) protein_coding-TTS (ENSMUSG00000040669.14) 6158 ENSMUSG00000040669.14 ENSMUSG00000040669 ENSMUST00000161210 Phc1 protein_coding Interval_94447 chr2 91290806 91291829 + 0 NA intron (ENSMUSG00000040591.18, intron 4 of 8) protein_coding-intron (ENSMUSG00000040591.18, intron 4 of 8) 25983 ENSMUSG00000027255.14 ENSMUSG00000027255 ENSMUST00000127895 Arfgap2 protein_coding Interval_26329 chr11 56270290 56270613 + 0 NA Intergenic Intergenic -7211 ENSMUSG00000065635.1 ENSMUSG00000065635 ENSMUST00000083701 Gm24253 snoRNA Interval_106313 chr3 95306903 95308148 + 0 NA promoter-TSS (ENSMUSG00000015702.13) protein_coding-promoter-TSS (ENSMUSG00000015702.13) -721 ENSMUSG00000015702.13 ENSMUSG00000015702 ENSMUST00000123365 Anxa9 protein_coding Interval_34460 chr12 4365494 4366345 + 0 NA intron (ENSMUSG00000020647.10, intron 2 of 22) protein_coding-intron (ENSMUSG00000020647.10, intron 2 of 22) 18272 ENSMUSG00000088207.1 ENSMUSG00000088207 ENSMUST00000157582 Gm23756 rRNA Interval_168139 chr9 77476404 77476615 + 0 NA intron (ENSMUSG00000032352.16, intron 1 of 1) protein_coding-intron (ENSMUSG00000032352.16, intron 2 of 13) 68339 ENSMUSG00000032352.16 ENSMUSG00000032352 ENSMUST00000183980 Lrrc1 protein_coding Interval_70982 chr17 16980635 16981066 + 0 NA Intergenic Intergenic 29298 ENSMUSG00000060149.7 ENSMUSG00000060149 ENSMUST00000071374 BC002059 lincRNA Interval_124979 chr5 62977346 62977821 + 0 NA Intergenic Intergenic 165909 ENSMUSG00000090326.2 ENSMUSG00000090326 ENSMUST00000170704 Dthd1 protein_coding Interval_81017 chr18 52959840 52960532 + 0 NA Intergenic Intergenic 7637 ENSMUSG00000118195.1 ENSMUSG00000118195 ENSMUST00000235787 Gm8572 processed_pseudogene Interval_95700 chr2 114400640 114401159 + 0 NA Intergenic Intergenic -127464 ENSMUSG00000101266.1 ENSMUSG00000101266 ENSMUST00000187452 Gm29234 lincRNA Interval_39579 chr12 91044326 91044656 + 0 NA intron (ENSMUSG00000061533.16, intron 8 of 12) protein_coding-intron (ENSMUSG00000061533.16, intron 3 of 6) -1357 ENSMUSG00000085004.2 ENSMUSG00000085004 ENSMUST00000129932 5430427M07Rik antisense Interval_140183 chr6 115053799 115054251 + 0 NA Intergenic Intergenic -16170 ENSMUSG00000030316.13 ENSMUSG00000030316 ENSMUST00000144445 Tamm41 protein_coding Interval_81667 chr18 63000340 63001141 + 0 NA Intergenic Intergenic 22893 ENSMUSG00000024581.13 ENSMUSG00000024581 ENSMUST00000236914 Napg protein_coding Interval_130240 chr5 125148071 125148339 + 0 NA intron (ENSMUSG00000029478.16, intron 1 of 47) protein_coding-intron (ENSMUSG00000029478.16, intron 1 of 46) 61364 ENSMUSG00000106663.1 ENSMUSG00000106663 ENSMUST00000198978 Gm42839 antisense Interval_60755 chr15 76550090 76550561 + 0 NA Intergenic Intergenic 11361 ENSMUSG00000022560.9 ENSMUSG00000022560 ENSMUST00000230994 Slc52a2 protein_coding Interval_42623 chr13 17058722 17060278 + 0 NA intron (ENSMUSG00000055137.7, intron 12 of 13) protein_coding-intron (ENSMUSG00000055137.7, intron 12 of 13) 8579 ENSMUSG00000098218.1 ENSMUSG00000098218 ENSMUST00000182807 Gm27043 processed_pseudogene Interval_51379 chr14 27106128 27106370 + 0 NA exon (ENSMUSG00000040717.6, exon 13 of 13) protein_coding-exon (ENSMUSG00000040717.6, exon 13 of 13) -8650 ENSMUSG00000021895.10 ENSMUSG00000021895 ENSMUST00000225494 Arhgef3 protein_coding Interval_11465 chr1 182040340 182041861 + 0 NA Intergenic Intergenic -30303 ENSMUSG00000103379.1 ENSMUSG00000103379 ENSMUST00000193768 Gm37177 processed_pseudogene Interval_115336 chr4 96799563 96799881 + 0 NA Intergenic Intergenic -14536 ENSMUSG00000078639.1 ENSMUSG00000078639 ENSMUST00000107071 Gm12695 protein_coding Interval_173054 chrX 68811485 68812354 + 0 NA Intergenic Intergenic -9174 ENSMUSG00000071748.2 ENSMUSG00000071748 ENSMUST00000096420 Gm14698 protein_coding Interval_128014 chr5 110285530 110287010 + 0 NA promoter-TSS (ENSMUSG00000007080.14) protein_coding-promoter-TSS (ENSMUSG00000007080.14) -249 ENSMUSG00000029499.11 ENSMUSG00000029499 ENSMUST00000126882 Pxmp2 protein_coding Interval_131700 chr5 139380176 139381088 + 0 NA promoter-TSS (ENSMUSG00000044197.8) protein_coding-promoter-TSS (ENSMUSG00000044197.8) 2935 ENSMUSG00000044197.8 ENSMUSG00000044197 ENSMUST00000100514 Gpr146 protein_coding Interval_51879 chr14 33312507 33314290 + 0 NA intron (ENSMUSG00000063506.14, intron 1 of 7) protein_coding-intron (ENSMUSG00000063506.14, intron 4 of 10) 56745 ENSMUSG00000087639.1 ENSMUSG00000087639 ENSMUST00000137359 Gm15512 antisense Interval_171122 chr9 114646305 114647828 + 0 NA TTS (ENSMUSG00000111744.1) processed_pseudogene-TTS (ENSMUSG00000111744.1) 969 ENSMUSG00000111744.1 ENSMUSG00000111744 ENSMUST00000214787 Gm7780 processed_pseudogene Interval_71956 chr17 27211979 27213548 + 0 NA TTS (ENSMUSG00000118503.1) unitary_pseudogene-TTS (ENSMUSG00000118503.1) 4715 ENSMUSG00000118503.1 ENSMUSG00000118503 ENSMUST00000239096 AC141882.1 unitary_pseudogene Interval_114154 chr4 65251880 65252979 + 0 NA intron (ENSMUSG00000028370.7, intron 9 of 21) protein_coding-intron (ENSMUSG00000028370.7, intron 9 of 21) 128255 ENSMUSG00000028370.7 ENSMUSG00000028370 ENSMUST00000084501 Pappa protein_coding Interval_157753 chr8 72746049 72746570 + 0 NA intron (ENSMUSG00000031622.16, intron 3 of 3) protein_coding-intron (ENSMUSG00000031622.16, intron 10 of 18) 5458 ENSMUSG00000031622.16 ENSMUSG00000031622 ENSMUST00000212677 Sin3b protein_coding Interval_140073 chr6 113838480 113838827 + 0 NA intron (ENSMUSG00000030302.16, intron 2 of 19) protein_coding-intron (ENSMUSG00000030302.16, intron 2 of 19) -38969 ENSMUSG00000108297.1 ENSMUSG00000108297 ENSMUST00000204957 Gm44167 sense_intronic Interval_19558 chr10 103213503 103215054 + 0 NA promoter-TSS (ENSMUSG00000112622.1) TEC-promoter-TSS (ENSMUSG00000112622.1) -841 ENSMUSG00000112622.1 ENSMUSG00000112622 ENSMUST00000220380 Gm47164 TEC Interval_156415 chr8 47995892 47997001 + 0 NA Intergenic Intergenic -5522 ENSMUSG00000031563.8 ENSMUSG00000031563 ENSMUST00000212282 Wwc2 protein_coding Interval_74180 chr17 46926675 46927457 + 0 NA Intergenic Intergenic 16588 ENSMUSG00000023978.5 ENSMUSG00000023978 ENSMUST00000162469 Prph2 protein_coding Interval_41991 chr13 6047159 6047334 + 0 NA Intergenic Intergenic -18242 ENSMUSG00000113054.1 ENSMUSG00000113054 ENSMUST00000222688 Gm47514 lincRNA Interval_33079 chr11 114238350 114238589 + 0 NA promoter-TSS (ENSMUSG00000085844.1) lincRNA-promoter-TSS (ENSMUSG00000085844.1) 33 ENSMUSG00000085844.1 ENSMUSG00000085844 ENSMUST00000128183 Gm11690 lincRNA Interval_106157 chr3 93807845 93808088 + 0 NA Intergenic Intergenic 11568 ENSMUSG00000060256.1 ENSMUSG00000060256 ENSMUST00000075953 Tdpoz4 protein_coding Interval_96409 chr2 122266327 122266596 + 0 NA Intergenic Intergenic 31712 ENSMUSG00000027227.7 ENSMUSG00000027227 ENSMUST00000110551 Sord protein_coding Interval_25633 chr11 50311483 50312956 + 0 NA intron (ENSMUSG00000020368.15, intron 1 of 14) protein_coding-intron (ENSMUSG00000020368.15, intron 1 of 14) 13454 ENSMUSG00000020368.15 ENSMUSG00000020368 ENSMUST00000155801 Canx protein_coding Interval_127391 chr5 103681831 103682057 + 0 NA Intergenic Intergenic 23707 ENSMUSG00000088121.1 ENSMUSG00000088121 ENSMUST00000157496 Gm25721 snRNA Interval_95923 chr2 118450265 118450516 + 0 NA intron (ENSMUSG00000005102.13, intron 23 of 39) protein_coding-intron (ENSMUSG00000005102.13, intron 22 of 38) -6770 ENSMUSG00000005102.13 ENSMUSG00000005102 ENSMUST00000125281 Eif2ak4 protein_coding Interval_141870 chr6 135038778 135039079 + 0 NA Intergenic Intergenic -26723 ENSMUSG00000046733.7 ENSMUSG00000046733 ENSMUST00000050104 Gprc5a protein_coding Interval_127330 chr5 103026915 103027312 + 0 NA promoter-TSS (ENSMUSG00000046709.18) protein_coding-promoter-TSS (ENSMUSG00000046709.18) -40800 ENSMUSG00000105947.1 ENSMUSG00000105947 ENSMUST00000199275 Gm43789 TEC Interval_168269 chr9 78344429 78344716 + 0 NA intron (ENSMUSG00000057933.10, intron 1 of 6) protein_coding-intron (ENSMUSG00000057933.10, intron 1 of 6) -5820 ENSMUSG00000057933.10 ENSMUSG00000057933 ENSMUST00000140498 Gsta2 protein_coding Interval_109799 chr3 147253326 147254104 + 0 NA Intergenic Intergenic -60797 ENSMUSG00000103099.1 ENSMUSG00000103099 ENSMUST00000193340 Gm6074 processed_pseudogene Interval_103945 chr3 55351788 55352531 + 0 NA intron (ENSMUSG00000027797.15, intron 3 of 16) protein_coding-intron (ENSMUSG00000027797.15, intron 3 of 16) 21318 ENSMUSG00000105302.1 ENSMUSG00000105302 ENSMUST00000199764 Gm19817 TEC Interval_43425 chr13 30659424 30660746 + 0 NA promoter-TSS (ENSMUSG00000069255.13) protein_coding-promoter-TSS (ENSMUSG00000069255.13) 13 ENSMUSG00000069255.13 ENSMUSG00000069255 ENSMUST00000095914 Dusp22 protein_coding Interval_46051 chr13 60610326 60611396 + 0 NA intron (ENSMUSG00000021559.14, intron 2 of 26) protein_coding-intron (ENSMUSG00000021559.14, intron 2 of 26) 8914 ENSMUSG00000021559.14 ENSMUSG00000021559 ENSMUST00000225952 Dapk1 protein_coding Interval_36347 chr12 41716658 41717637 + 0 NA intron (ENSMUSG00000056899.10, intron 5 of 5) protein_coding-intron (ENSMUSG00000056899.10, intron 6 of 6) 32753 ENSMUSG00000113438.1 ENSMUSG00000113438 ENSMUST00000221651 Gm47369 processed_pseudogene Interval_85671 chr19 29521649 29523312 + 0 NA promoter-TSS (ENSMUSG00000038658.15) protein_coding-promoter-TSS (ENSMUSG00000038658.15) -1510 ENSMUSG00000097855.8 ENSMUSG00000097855 ENSMUST00000180737 A930007I19Rik antisense Interval_45858 chr13 58590786 58591214 + 0 NA intron (ENSMUSG00000021553.14, intron 1 of 5) protein_coding-intron (ENSMUSG00000021553.14, intron 1 of 17) 19877 ENSMUSG00000021553.14 ENSMUSG00000021553 ENSMUST00000151675 Slc28a3 protein_coding Interval_34381 chr12 3746064 3746409 + 0 NA intron (ENSMUSG00000071454.13, intron 12 of 20) protein_coding-intron (ENSMUSG00000071454.13, intron 12 of 18) 15910 ENSMUSG00000092286.1 ENSMUSG00000092286 ENSMUST00000173847 Dtnbos antisense Interval_128698 chr5 114794397 114795507 + 0 NA promoter-TSS (ENSMUSG00000041870.16) protein_coding-promoter-TSS (ENSMUSG00000041870.16) -4619 ENSMUSG00000041870.16 ENSMUSG00000041870 ENSMUST00000200704 Ankrd13a protein_coding Interval_49672 chr13 113895592 113895920 + 0 NA intron (ENSMUSG00000042348.10, intron 1 of 3) protein_coding-intron (ENSMUSG00000042348.10, intron 1 of 4) 101163 ENSMUSG00000042348.10 ENSMUSG00000042348 ENSMUST00000224068 Arl15 protein_coding Interval_82471 chr18 74282829 74283576 + 0 NA promoter-TSS (ENSMUSG00000035394.11) protein_coding-promoter-TSS (ENSMUSG00000035394.11) 15027 ENSMUSG00000024561.11 ENSMUSG00000024561 ENSMUST00000237568 Mbd1 protein_coding Interval_64652 chr16 13896938 13897299 + 0 NA intron (ENSMUSG00000022680.14, intron 1 of 22) protein_coding-intron (ENSMUSG00000022680.14, intron 1 of 23) 5864 ENSMUSG00000022680.14 ENSMUSG00000022680 ENSMUST00000137715 Pdxdc1 protein_coding Interval_87462 chr19 52321539 52321914 + 0 NA Intergenic Intergenic -15439 ENSMUSG00000118114.1 ENSMUSG00000118114 ENSMUST00000236031 Gm50332 lincRNA Interval_40208 chr12 102554123 102555566 + 0 NA promoter-TSS (ENSMUSG00000021194.6) protein_coding-promoter-TSS (ENSMUSG00000021194.6) -3224 ENSMUSG00000021194.6 ENSMUSG00000021194 ENSMUST00000223100 Chga protein_coding Interval_110712 chr4 6724304 6724580 + 0 NA intron (ENSMUSG00000041272.11, intron 4 of 8) protein_coding-intron (ENSMUSG00000041272.11, intron 4 of 8) 36273 ENSMUSG00000086052.1 ENSMUSG00000086052 ENSMUST00000137749 Gm11802 antisense Interval_108404 chr3 126692774 126693514 + 0 NA intron (ENSMUSG00000053819.16, intron 3 of 20) protein_coding-intron (ENSMUSG00000053819.16, intron 3 of 18) -24100 ENSMUSG00000086679.2 ENSMUSG00000086679 ENSMUST00000132762 Gm15551 antisense Interval_66100 chr16 31597546 31598316 + 0 NA Intergenic Intergenic -4711 ENSMUSG00000116793.1 ENSMUSG00000116793 ENSMUST00000232216 Gm34256 lincRNA Interval_45769 chr13 57925331 57925707 + 0 NA Intergenic Intergenic -17187 ENSMUSG00000056222.15 ENSMUSG00000056222 ENSMUST00000185905 Spock1 protein_coding Interval_6211 chr1 101873287 101873511 + 0 NA Intergenic Intergenic 7342 ENSMUSG00000100349.1 ENSMUSG00000100349 ENSMUST00000190483 Gm28188 processed_pseudogene Interval_129019 chr5 116781878 116782920 + 0 NA intron (ENSMUSG00000106909.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000106909.1, intron 1 of 2) -28832 ENSMUSG00000107237.1 ENSMUSG00000107237 ENSMUST00000201443 Gm29926 lincRNA Interval_72839 chr17 32491929 32492923 + 0 NA TTS (ENSMUSG00000061126.5) protein_coding-TTS (ENSMUSG00000061126.5) -13624 ENSMUSG00000091586.2 ENSMUSG00000091586 ENSMUST00000236129 Cyp4f17 protein_coding Interval_146786 chr7 51270033 51271462 + 0 NA Intergenic Intergenic 100230 ENSMUSG00000108963.1 ENSMUSG00000108963 ENSMUST00000208113 Gm16478 processed_pseudogene Interval_43541 chr13 32902423 32903846 + 0 NA Intergenic Intergenic -4977 ENSMUSG00000079049.9 ENSMUSG00000079049 ENSMUST00000221019 Serpinb1c protein_coding Interval_172645 chrX 39205283 39206225 + 0 NA Intergenic Intergenic 20894 ENSMUSG00000084247.1 ENSMUSG00000084247 ENSMUST00000118915 Gm14566 processed_pseudogene Interval_56827 chr14 122300239 122300955 + 0 NA intron (ENSMUSG00000025545.10, intron 1 of 7) protein_coding-intron (ENSMUSG00000025545.10, intron 1 of 7) 42556 ENSMUSG00000025545.10 ENSMUSG00000025545 ENSMUST00000226136 Clybl protein_coding Interval_29804 chr11 86955897 86956637 + 0 NA intron (ENSMUSG00000018427.8, intron 1 of 3) protein_coding-intron (ENSMUSG00000018427.8, intron 2 of 4) 15757 ENSMUSG00000018427.8 ENSMUSG00000018427 ENSMUST00000238921 Ypel2 protein_coding Interval_27710 chr11 69590299 69590924 + 0 NA TTS (ENSMUSG00000059552.13) protein_coding-TTS (ENSMUSG00000059552.13) 10252 ENSMUSG00000059552.13 ENSMUSG00000059552 ENSMUST00000130540 Trp53 protein_coding Interval_52122 chr14 36880977 36881986 + 0 NA intron (ENSMUSG00000058690.14, intron 2 of 2) protein_coding-intron (ENSMUSG00000058690.14, intron 9 of 9) -25437 ENSMUSG00000065894.1 ENSMUSG00000065894 ENSMUST00000083960 n-R5s46 rRNA Interval_85601 chr19 29007700 29009408 + 0 NA exon (ENSMUSG00000024780.7, exon 5 of 5) protein_coding-exon (ENSMUSG00000024780.7, exon 5 of 5) -3016 ENSMUSG00000024780.7 ENSMUSG00000024780 ENSMUST00000224830 Cdc37l1 protein_coding Interval_16783 chr10 68136343 68138329 + 0 NA promoter-TSS (ENSMUSG00000019947.10) protein_coding-promoter-TSS (ENSMUSG00000019947.10) -110710 ENSMUSG00000086838.1 ENSMUSG00000086838 ENSMUST00000143555 Gm16212 antisense Interval_78887 chr18 21147810 21148645 + 0 NA exon (ENSMUSG00000042680.8, exon 4 of 6) protein_coding-exon (ENSMUSG00000042680.8, exon 4 of 6) -71118 ENSMUSG00000062962.5 ENSMUSG00000062962 ENSMUST00000084199 Gm6378 processed_pseudogene Interval_143998 chr7 18867668 18868015 + 0 NA Intergenic Intergenic -3529 ENSMUSG00000030413.7 ENSMUSG00000030413 ENSMUST00000206481 Pglyrp1 protein_coding Interval_112704 chr4 44247074 44247959 + 0 NA Intergenic Intergenic -26249 ENSMUSG00000092677.1 ENSMUSG00000092677 ENSMUST00000174936 Mir5106 miRNA Interval_155211 chr8 27592609 27593038 + 0 NA intron (ENSMUSG00000110333.1, intron 57 of 65) protein_coding-intron (ENSMUSG00000110333.1, intron 59 of 69) -11554 ENSMUSG00000074404.6 ENSMUSG00000074404 ENSMUST00000211230 Gm1698 lincRNA Interval_42491 chr13 14062877 14064978 + 0 NA promoter-TSS (ENSMUSG00000039219.18) protein_coding-promoter-TSS (ENSMUSG00000039219.18) -896 ENSMUSG00000039219.18 ENSMUSG00000039219 ENSMUST00000151151 Arid4b protein_coding Interval_159756 chr8 101087549 101087752 + 0 NA Intergenic Intergenic -361295 ENSMUSG00000109769.1 ENSMUSG00000109769 ENSMUST00000210760 Gm39232 lincRNA Interval_81279 chr18 57354395 57355354 + 0 NA promoter-TSS (ENSMUSG00000024594.9) protein_coding-promoter-TSS (ENSMUSG00000024594.9) -16 ENSMUSG00000024594.9 ENSMUSG00000024594 ENSMUST00000236709 Prrc1 protein_coding Interval_4673 chr1 75981140 75981542 + 0 NA Intergenic Intergenic 37415 ENSMUSG00000099996.1 ENSMUSG00000099996 ENSMUST00000188786 Gm29065 lincRNA Interval_65953 chr16 30503715 30505736 + 0 NA Intergenic Intergenic 38772 ENSMUSG00000022537.18 ENSMUSG00000022537 ENSMUST00000153380 Tmem44 protein_coding Interval_90648 chr2 31670364 31671301 + 0 NA promoter-TSS (ENSMUSG00000039356.15) protein_coding-promoter-TSS (ENSMUSG00000039356.15) -7452 ENSMUSG00000039356.15 ENSMUSG00000039356 ENSMUST00000192043 Exosc2 protein_coding Interval_50018 chr13 119736610 119737344 + 0 NA intron (ENSMUSG00000095930.1, intron 1 of 3) protein_coding-intron (ENSMUSG00000095930.1, intron 1 of 3) 1417 ENSMUSG00000095930.1 ENSMUSG00000095930 ENSMUST00000178973 Nim1k protein_coding Interval_39449 chr12 87480104 87481188 + 0 NA exon (ENSMUSG00000112943.1, exon 1 of 1) processed_pseudogene-exon (ENSMUSG00000112943.1, exon 1 of 1) 538 ENSMUSG00000112943.1 ENSMUSG00000112943 ENSMUST00000222884 Gm18983 processed_pseudogene Interval_33199 chr11 115181887 115182782 + 0 NA TTS (ENSMUSG00000015542.17) protein_coding-TTS (ENSMUSG00000015542.17) 4928 ENSMUSG00000015542.17 ENSMUSG00000015542 ENSMUST00000134769 Nat9 protein_coding Interval_73963 chr17 45718006 45718846 + 0 NA Intergenic Intergenic 15418 ENSMUSG00000094690.2 ENSMUSG00000094690 ENSMUST00000178179 1600014C23Rik protein_coding Interval_29699 chr11 86208135 86209157 + 0 NA exon (ENSMUSG00000085208.3, exon 2 of 2) antisense-exon (ENSMUSG00000085208.3, exon 2 of 2) 7263 ENSMUSG00000085208.3 ENSMUSG00000085208 ENSMUST00000143819 Brip1os antisense Interval_158746 chr8 85792193 85793696 + 0 NA intron (ENSMUSG00000031703.8, intron 6 of 17) protein_coding-intron (ENSMUSG00000031703.8, intron 6 of 17) -50107 ENSMUSG00000036879.15 ENSMUSG00000036879 ENSMUST00000162305 Phkb protein_coding Interval_21865 chr11 4836886 4837455 + 0 NA intron (ENSMUSG00000009073.16, intron 1 of 1) protein_coding-intron (ENSMUSG00000009073.16, intron 1 of 16) 11955 ENSMUSG00000009073.16 ENSMUSG00000009073 ENSMUST00000172305 Nf2 protein_coding Interval_10514 chr1 171418978 171420198 + 0 NA promoter-TSS (ENSMUSG00000103711.1) protein_coding-promoter-TSS (ENSMUSG00000103711.1) -131 ENSMUSG00000103711.1 ENSMUSG00000103711 ENSMUST00000194029 Tstd1 protein_coding Interval_19232 chr10 95650001 95650303 + 0 NA Intergenic Intergenic 15669 ENSMUSG00000112538.1 ENSMUSG00000112538 ENSMUST00000218479 Gm47667 lincRNA Interval_141263 chr6 126669732 126669981 + 0 NA Intergenic Intergenic -23472 ENSMUSG00000047976.4 ENSMUSG00000047976 ENSMUST00000205171 Kcna1 protein_coding Interval_172472 chrX 20869843 20870446 + 0 NA promoter-TSS (ENSMUSG00000001131.11) protein_coding-promoter-TSS (ENSMUSG00000001131.11) -22 ENSMUSG00000001131.11 ENSMUSG00000001131 ENSMUST00000009530 Timp1 protein_coding Interval_78363 chr18 12185481 12185799 + 0 NA promoter-TSS (ENSMUSG00000024410.15) protein_coding-promoter-TSS (ENSMUSG00000024410.15) -3531 ENSMUSG00000024410.15 ENSMUSG00000024410 ENSMUST00000234982 Rmc1 protein_coding Interval_89697 chr2 24755117 24755697 + 0 NA intron (ENSMUSG00000004113.18, intron 3 of 46) protein_coding-intron (ENSMUSG00000004113.18, intron 3 of 46) 80706 ENSMUSG00000083973.1 ENSMUSG00000083973 ENSMUST00000121558 Gm13459 processed_pseudogene Interval_24528 chr11 34055011 34055342 + 0 NA intron (ENSMUSG00000002699.13, intron 3 of 19) protein_coding-intron (ENSMUSG00000002699.13, intron 3 of 20) -31828 ENSMUSG00000002699.13 ENSMUSG00000002699 ENSMUST00000146318 Lcp2 protein_coding Interval_129711 chr5 121908675 121909059 + 0 NA intron (ENSMUSG00000042589.18, intron 2 of 20) protein_coding-intron (ENSMUSG00000042589.18, intron 4 of 22) -42804 ENSMUSG00000042589.18 ENSMUSG00000042589 ENSMUST00000125267 Cux2 protein_coding Interval_68951 chr16 89635559 89636054 + 0 NA Intergenic Intergenic -1666 ENSMUSG00000116651.1 ENSMUSG00000116651 ENSMUST00000232201 Gm17844 processed_pseudogene Interval_115717 chr4 102978512 102979274 + 0 NA intron (ENSMUSG00000028523.14, intron 1 of 4) antisense-intron (ENSMUSG00000085181.1, intron 2 of 3) 202 ENSMUSG00000028523.14 ENSMUSG00000028523 ENSMUST00000139883 Tctex1d1 protein_coding Interval_128628 chr5 114383354 114383645 + 0 NA intron (ENSMUSG00000029577.13, intron 1 of 6) protein_coding-intron (ENSMUSG00000029577.13, intron 1 of 27) -13292 ENSMUSG00000001098.15 ENSMUSG00000001098 ENSMUST00000123538 Kctd10 protein_coding Interval_57036 chr15 5023250 5024535 + 0 NA intron (ENSMUSG00000079105.4, intron 8 of 17) protein_coding-intron (ENSMUSG00000079105.4, intron 8 of 17) -11468 ENSMUSG00000065714.1 ENSMUSG00000065714 ENSMUST00000083780 Gm25652 snRNA Interval_25978 chr11 53287500 53288748 + 0 NA intron (ENSMUSG00000020361.13, intron 3 of 15) protein_coding-intron (ENSMUSG00000020361.13, intron 3 of 18) 12287 ENSMUSG00000020361.13 ENSMUSG00000020361 ENSMUST00000151854 Hspa4 protein_coding Interval_94633 chr2 92853914 92855217 + 0 NA Intergenic Intergenic 18744 ENSMUSG00000082700.1 ENSMUSG00000082700 ENSMUST00000121350 Gm13792 processed_pseudogene Interval_12771 chr10 5200931 5201387 + 0 NA intron (ENSMUSG00000096054.3, intron 90 of 145) protein_coding-intron (ENSMUSG00000096054.3, intron 90 of 145) -15633 ENSMUSG00000096054.3 ENSMUSG00000096054 ENSMUST00000214945 Syne1 protein_coding Interval_88253 chr19 61162045 61162329 + 0 NA Intergenic Intergenic 2294 ENSMUSG00000070263.1 ENSMUSG00000070263 ENSMUST00000093750 Gm22365 snRNA Interval_160392 chr8 108907800 108908052 + 0 NA intron (ENSMUSG00000038872.10, intron 10 of 15) protein_coding-intron (ENSMUSG00000038872.10, intron 4 of 9) 13948 ENSMUSG00000093697.1 ENSMUSG00000093697 ENSMUST00000175846 Gm20686 antisense Interval_170249 chr9 106452979 106455811 + 0 NA exon (ENSMUSG00000023495.13, exon 2 of 2) protein_coding-exon (ENSMUSG00000023495.13, exon 2 of 2) -1477 ENSMUSG00000100039.1 ENSMUSG00000100039 ENSMUST00000186713 Gm28959 antisense Interval_126025 chr5 76939511 76942038 + 0 NA intron (ENSMUSG00000072852.4, intron 1 of 1) protein_coding-intron (ENSMUSG00000029246.14, intron 1 of 9) 10798 ENSMUSG00000029246.14 ENSMUSG00000029246 ENSMUST00000031158 Ppat protein_coding Interval_27598 chr11 68961510 68963158 + 0 NA Intergenic Intergenic -5813 ENSMUSG00000018740.14 ENSMUSG00000018740 ENSMUST00000018884 Slc25a35 protein_coding Interval_49063 chr13 107658692 107659755 + 0 NA Intergenic Intergenic -28174 ENSMUSG00000102000.6 ENSMUSG00000102000 ENSMUST00000188490 1700006H21Rik lincRNA Interval_55631 chr14 96850270 96850947 + 0 NA Intergenic Intergenic 40903 ENSMUSG00000115714.1 ENSMUSG00000115714 ENSMUST00000226711 Gm18926 processed_pseudogene Interval_170822 chr9 110983350 110983657 + 0 NA exon (ENSMUSG00000032495.8, exon 9 of 9) protein_coding-exon (ENSMUSG00000032495.8, exon 9 of 9) -2698 ENSMUSG00000102060.1 ENSMUSG00000102060 ENSMUST00000185439 1700061E17Rik antisense Interval_91902 chr2 51139378 51141214 + 0 NA intron (ENSMUSG00000017144.8, intron 2 of 3) protein_coding-intron (ENSMUSG00000017144.8, intron 2 of 4) 8814 ENSMUSG00000017144.8 ENSMUSG00000017144 ENSMUST00000140864 Rnd3 protein_coding Interval_37910 chr12 72994284 72994811 + 0 NA Intergenic Intergenic 43652 ENSMUSG00000102197.1 ENSMUSG00000102197 ENSMUST00000195404 Gm38170 TEC Interval_150454 chr7 110745727 110747294 + 0 NA Intergenic Intergenic -22401 ENSMUSG00000005686.17 ENSMUSG00000005686 ENSMUST00000148292 Ampd3 protein_coding Interval_155949 chr8 41239238 41240951 + 0 NA intron (ENSMUSG00000031592.10, intron 1 of 38) protein_coding-intron (ENSMUSG00000031592.10, intron 1 of 37) 316 ENSMUSG00000031592.10 ENSMUSG00000031592 ENSMUST00000211247 Pcm1 protein_coding Interval_108094 chr3 121467288 121469812 + 0 NA intron (ENSMUSG00000039865.8, intron 12 of 14) protein_coding-intron (ENSMUSG00000039865.8, intron 12 of 14) 11437 ENSMUSG00000053931.11 ENSMUSG00000053931 ENSMUST00000199499 Cnn3 protein_coding Interval_19379 chr10 98637414 98637725 + 0 NA Intergenic Intergenic 62141 ENSMUSG00000112647.1 ENSMUSG00000112647 ENSMUST00000217680 Gm5427 lincRNA Interval_102776 chr3 30952492 30953446 + 0 NA intron (ENSMUSG00000037652.15, intron 4 of 13) protein_coding-intron (ENSMUSG00000037652.15, intron 4 of 16) 4669 ENSMUSG00000102369.1 ENSMUSG00000102369 ENSMUST00000194340 9530022L04Rik TEC Interval_115181 chr4 93668311 93668582 + 0 NA intron (ENSMUSG00000084833.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000084833.1, intron 1 of 2) 2624 ENSMUSG00000084833.1 ENSMUSG00000084833 ENSMUST00000137509 Gm12649 lincRNA Interval_36176 chr12 37879910 37881807 + 0 NA exon (ENSMUSG00000036095.11, exon 1 of 25) protein_coding-exon (ENSMUSG00000036095.11, exon 1 of 25) -57605 ENSMUSG00000113154.1 ENSMUSG00000113154 ENSMUST00000220862 Gm48713 TEC Interval_128365 chr5 112824387 112825227 + 0 NA intron (ENSMUSG00000072720.9, intron 16 of 16) protein_coding-intron (ENSMUSG00000072720.9, intron 21 of 43) 31475 ENSMUSG00000098230.7 ENSMUSG00000098230 ENSMUST00000189887 1700095B10Rik antisense Interval_41471 chr12 114768744 114769169 + 0 NA Intergenic Intergenic -4073 ENSMUSG00000103290.1 ENSMUSG00000103290 ENSMUST00000194625 Ighv1-23 IG_V_gene Interval_174035 chrX 130672918 130673161 + 0 NA Intergenic Intergenic -111142 ENSMUSG00000083024.1 ENSMUSG00000083024 ENSMUST00000121102 Gm14982 processed_pseudogene Interval_18389 chr10 85481815 85482739 + 0 NA intron (ENSMUSG00000020042.15, intron 1 of 16) protein_coding-intron (ENSMUSG00000020042.15, intron 1 of 9) 148376 ENSMUSG00000087895.1 ENSMUSG00000087895 ENSMUST00000157270 Gm25281 miRNA Interval_30132 chr11 89548790 89549456 + 0 NA intron (ENSMUSG00000047773.15, intron 4 of 21) protein_coding-intron (ENSMUSG00000047773.15, intron 2 of 16) 246400 ENSMUSG00000085798.1 ENSMUSG00000085798 ENSMUST00000140754 Gm2018 lincRNA Interval_35843 chr12 31168181 31168542 + 0 NA promoter-TSS (ENSMUSG00000095953.3) processed_transcript-promoter-TSS (ENSMUSG00000095953.3) 25601 ENSMUSG00000095953.3 ENSMUSG00000095953 ENSMUST00000179160 6030469F06Rik processed_transcript Interval_38031 chr12 74283849 74285063 + 0 NA exon (ENSMUSG00000071265.10, exon 1 of 3) transcribed_unitary_pseudogene-exon (ENSMUSG00000071265.10, exon 1 of 3) 175 ENSMUSG00000071265.10 ENSMUSG00000071265 ENSMUST00000185822 1700086L19Rik transcribed_unitary_pseudogene Interval_107367 chr3 106877342 106877966 + 0 NA intron (ENSMUSG00000105102.1, intron 1 of 3) lincRNA-intron (ENSMUSG00000105102.1, intron 1 of 3) 1707 ENSMUSG00000105102.1 ENSMUSG00000105102 ENSMUST00000197932 Gm35507 lincRNA Interval_28275 chr11 74837540 74839129 + 0 NA TTS (ENSMUSG00000000282.12) protein_coding-TTS (ENSMUSG00000000282.12) 2008 ENSMUSG00000000282.12 ENSMUSG00000000282 ENSMUST00000132150 Mnt protein_coding Interval_147510 chr7 67862470 67862746 + 0 NA Intergenic Intergenic -12976 ENSMUSG00000109193.1 ENSMUSG00000109193 ENSMUST00000208560 Gm39027 lincRNA Interval_62229 chr15 89014946 89015321 + 0 NA intron (ENSMUSG00000015365.15, intron 15 of 26) protein_coding-intron (ENSMUSG00000015365.15, intron 15 of 26) -4088 ENSMUSG00000064481.1 ENSMUSG00000064481 ENSMUST00000082547 Gm23737 snRNA Interval_22591 chr11 12025440 12026982 + 0 NA exon (ENSMUSG00000020176.17, exon 1 of 4) protein_coding-exon (ENSMUSG00000020176.17, exon 1 of 4) 113 ENSMUSG00000020176.17 ENSMUSG00000020176 ENSMUST00000143915 Grb10 protein_coding Interval_141082 chr6 124859680 124860164 + 0 NA exon (ENSMUSG00000038390.11, exon 3 of 4) protein_coding-exon (ENSMUSG00000038390.11, exon 3 of 4) 4061 ENSMUSG00000038390.11 ENSMUSG00000038390 ENSMUST00000204253 Gpr162 protein_coding Interval_125068 chr5 64237333 64237803 + 0 NA intron (ENSMUSG00000029174.18, intron 1 of 18) protein_coding-intron (ENSMUSG00000029174.18, intron 2 of 21) 3638 ENSMUSG00000104947.1 ENSMUSG00000104947 ENSMUST00000199677 Gm43721 TEC Interval_119489 chr4 137900169 137900588 + 0 NA intron (ENSMUSG00000057530.14, intron 1 of 1) protein_coding-intron (ENSMUSG00000057530.14, intron 1 of 19) -13093 ENSMUSG00000057530.14 ENSMUSG00000057530 ENSMUST00000129607 Ece1 protein_coding Interval_165849 chr9 53796454 53797952 + 0 NA intron (ENSMUSG00000042195.9, intron 1 of 7) protein_coding-intron (ENSMUSG00000042195.9, intron 1 of 7) -13514 ENSMUSG00000042195.9 ENSMUSG00000042195 ENSMUST00000216515 Slc35f2 protein_coding Interval_159637 chr8 95931252 95931459 + 0 NA intron (ENSMUSG00000110634.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000110634.1, intron 1 of 1) 9826 ENSMUSG00000110506.1 ENSMUSG00000110506 ENSMUST00000212919 Gm8637 processed_pseudogene Interval_121910 chr5 9490976 9491184 + 0 NA intron (ENSMUSG00000003974.6, intron 5 of 5) protein_coding-intron (ENSMUSG00000003974.6, intron 5 of 5) 111527 ENSMUSG00000106637.1 ENSMUSG00000106637 ENSMUST00000199761 Gm42455 TEC Interval_30374 chr11 93954904 93956505 + 0 NA promoter-TSS (ENSMUSG00000020857.11) protein_coding-promoter-TSS (ENSMUSG00000020857.11) 79 ENSMUSG00000020857.11 ENSMUSG00000020857 ENSMUST00000072566 Nme2 protein_coding Interval_97054 chr2 130807918 130808169 + 0 NA intron (ENSMUSG00000027309.18, intron 6 of 20) protein_coding-intron (ENSMUSG00000027309.18, intron 6 of 36) -4061 ENSMUSG00000089662.1 ENSMUSG00000089662 ENSMUST00000120631 Gm14057 transcribed_processed_pseudogene Interval_16369 chr10 62522609 62523616 + 0 NA intron (ENSMUSG00000020077.14, intron 1 of 3) protein_coding-intron (ENSMUSG00000020077.14, intron 1 of 3) 4313 ENSMUSG00000020077.14 ENSMUSG00000020077 ENSMUST00000162956 Srgn protein_coding Interval_51638 chr14 30991095 30991424 + 0 NA Intergenic Intergenic 10413 ENSMUSG00000021917.16 ENSMUSG00000021917 ENSMUST00000226374 Spcs1 protein_coding Interval_134620 chr6 30001480 30001875 + 0 NA Intergenic Intergenic 13289 ENSMUSG00000095989.1 ENSMUSG00000095989 ENSMUST00000178068 Gm23049 miRNA Interval_75483 chr17 67181268 67181689 + 0 NA intron (ENSMUSG00000033278.10, intron 2 of 19) protein_coding-intron (ENSMUSG00000033278.10, intron 2 of 32) -155243 ENSMUSG00000093508.1 ENSMUSG00000093508 ENSMUST00000176783 Mir5709 miRNA Interval_75458 chr17 66703150 66703466 + 0 NA intron (ENSMUSG00000033278.10, intron 21 of 30) protein_coding-intron (ENSMUSG00000033278.10, intron 23 of 32) -11146 ENSMUSG00000114563.1 ENSMUSG00000114563 ENSMUST00000224424 1700016K05Rik antisense Interval_128967 chr5 116360838 116361584 + 0 NA Intergenic Intergenic 20424 ENSMUSG00000106766.1 ENSMUSG00000106766 ENSMUST00000200749 4933424N20Rik TEC Interval_6032 chr1 94260425 94260966 + 0 NA Intergenic Intergenic 56278 ENSMUSG00000100990.1 ENSMUSG00000100990 ENSMUST00000190284 Gm7891 processed_pseudogene Interval_35524 chr12 24424775 24425433 + 0 NA Intergenic Intergenic -41943 ENSMUSG00000113403.1 ENSMUSG00000113403 ENSMUST00000222696 Gm9315 processed_pseudogene Interval_80431 chr18 42155871 42156172 + 0 NA exon (ENSMUSG00000057719.11, exon 9 of 9) protein_coding-exon (ENSMUSG00000057719.11, exon 9 of 9) 12988 ENSMUSG00000057719.11 ENSMUSG00000057719 ENSMUST00000236947 Sh3rf2 protein_coding Interval_114734 chr4 84562497 84562704 + 0 NA intron (ENSMUSG00000028487.18, intron 1 of 5) protein_coding-intron (ENSMUSG00000028487.18, intron 1 of 7) -133476 ENSMUSG00000083743.1 ENSMUSG00000083743 ENSMUST00000119071 Gm12421 processed_pseudogene Interval_1915 chr1 34516405 34517194 + 0 NA Intergenic Intergenic 7208 ENSMUSG00000101116.1 ENSMUSG00000101116 ENSMUST00000188334 Gm28416 processed_pseudogene Interval_90813 chr2 32756787 32757953 + 0 NA promoter-TSS (ENSMUSG00000009563.16) protein_coding-promoter-TSS (ENSMUSG00000009563.16) 125 ENSMUSG00000009563.16 ENSMUSG00000009563 ENSMUST00000149987 Tor2a protein_coding Interval_74949 chr17 57786403 57786959 + 0 NA intron (ENSMUSG00000038048.8, intron 1 of 23) protein_coding-intron (ENSMUSG00000038048.8, intron 1 of 23) 17111 ENSMUSG00000038048.8 ENSMUSG00000038048 ENSMUST00000076038 Cntnap5c protein_coding Interval_114166 chr4 65591251 65591452 + 0 NA intron (ENSMUSG00000028373.16, intron 15 of 21) protein_coding-intron (ENSMUSG00000028373.16, intron 16 of 22) -13898 ENSMUSG00000051675.13 ENSMUSG00000051675 ENSMUST00000156922 Trim32 protein_coding Interval_130939 chr5 134165715 134165993 + 0 NA intron (ENSMUSG00000061979.8, intron 2 of 2) protein_coding-intron (ENSMUSG00000061979.8, intron 5 of 10) 2406 ENSMUSG00000061979.8 ENSMUSG00000061979 ENSMUST00000156574 Rcc1l protein_coding Interval_69181 chr16 91180628 91181853 + 0 NA Intergenic Intergenic -5906 ENSMUSG00000116713.1 ENSMUSG00000116713 ENSMUST00000231233 Gm49613 processed_pseudogene Interval_23785 chr11 26209698 26211093 + 0 NA intron (ENSMUSG00000032985.15, intron 1 of 1) protein_coding-intron (ENSMUSG00000032985.15, intron 1 of 6) 8155 ENSMUSG00000099015.1 ENSMUSG00000099015 ENSMUST00000185114 Mir6372 miRNA Interval_116233 chr4 108927348 108928205 + 0 NA intron (ENSMUSG00000003411.10, intron 3 of 4) protein_coding-intron (ENSMUSG00000003411.10, intron 2 of 3) 6032 ENSMUSG00000082699.1 ENSMUSG00000082699 ENSMUST00000119330 Gm12736 processed_pseudogene Interval_129158 chr5 117906923 117907433 + 0 NA intron (ENSMUSG00000029361.18, intron 9 of 27) protein_coding-intron (ENSMUSG00000029361.18, intron 10 of 28) 32340 ENSMUSG00000098072.1 ENSMUSG00000098072 ENSMUST00000182216 Gm26995 antisense Interval_144009 chr7 18940816 18942062 + 0 NA intron (ENSMUSG00000030411.16, intron 1 of 3) protein_coding-intron (ENSMUSG00000030411.16, intron 1 of 3) 15551 ENSMUSG00000030411.16 ENSMUSG00000030411 ENSMUST00000220302 Nova2 protein_coding Interval_37747 chr12 71638199 71638483 + 0 NA intron (ENSMUSG00000114028.1, intron 2 of 5) lincRNA-intron (ENSMUSG00000114028.1, intron 2 of 5) 60376 ENSMUSG00000114028.1 ENSMUSG00000114028 ENSMUST00000222033 9630002D21Rik lincRNA Interval_39389 chr12 87071005 87071348 + 0 NA intron (ENSMUSG00000034145.14, intron 10 of 25) protein_coding-intron (ENSMUSG00000034145.14, intron 10 of 24) 3699 ENSMUSG00000080868.1 ENSMUSG00000080868 ENSMUST00000119807 Gm15745 processed_pseudogene Interval_127429 chr5 103866233 103866816 + 0 NA intron (ENSMUSG00000029312.12, intron 5 of 6) protein_coding-intron (ENSMUSG00000029312.12, intron 8 of 9) 7845 ENSMUSG00000029312.12 ENSMUSG00000029312 ENSMUST00000147184 Klhl8 protein_coding Interval_98094 chr2 147994071 147994284 + 0 NA intron (ENSMUSG00000086141.7, intron 1 of 2) lincRNA-intron (ENSMUSG00000086141.7, intron 3 of 4) 46026 ENSMUSG00000086141.7 ENSMUSG00000086141 ENSMUST00000132070 9030622O22Rik lincRNA Interval_72101 chr17 28041380 28042775 + 0 NA promoter-TSS (ENSMUSG00000024219.16) protein_coding-promoter-TSS (ENSMUSG00000024219.16) 1302 ENSMUSG00000024219.16 ENSMUSG00000024219 ENSMUST00000232769 Anks1 protein_coding Interval_123420 chr5 32410989 32411259 + 0 NA Intergenic Intergenic -8879 ENSMUSG00000107211.1 ENSMUSG00000107211 ENSMUST00000202263 Gm5864 processed_pseudogene Interval_40829 chr12 108719374 108720003 + 0 NA Intergenic Intergenic 2236 ENSMUSG00000093173.1 ENSMUSG00000093173 ENSMUST00000175432 Gm23872 miRNA Interval_146161 chr7 44443223 44443579 + 0 NA intron (ENSMUSG00000047085.14, intron 1 of 2) protein_coding-intron (ENSMUSG00000047085.14, intron 1 of 2) 664 ENSMUSG00000047085.14 ENSMUSG00000047085 ENSMUST00000156093 Lrrc4b protein_coding Interval_81784 chr18 64646839 64647179 + 0 NA intron (ENSMUSG00000039529.9, intron 1 of 4) protein_coding-intron (ENSMUSG00000039529.9, intron 1 of 27) 13798 ENSMUSG00000039529.9 ENSMUSG00000039529 ENSMUST00000237686 Atp8b1 protein_coding Interval_155207 chr8 27514226 27514990 + 0 NA intron (ENSMUSG00000110333.1, intron 21 of 65) protein_coding-intron (ENSMUSG00000110333.1, intron 22 of 69) 66938 ENSMUSG00000063932.5 ENSMUSG00000063932 ENSMUST00000081321 Poteg protein_coding Interval_107631 chr3 109026956 109027941 + 0 NA promoter-TSS (ENSMUSG00000040339.10) protein_coding-promoter-TSS (ENSMUSG00000040339.10) 159 ENSMUSG00000040339.10 ENSMUSG00000040339 ENSMUST00000171143 Fam102b protein_coding Interval_167210 chr9 66220390 66220971 + 0 NA promoter-TSS (ENSMUSG00000032380.9) protein_coding-promoter-TSS (ENSMUSG00000032380.9) 62454 ENSMUSG00000032380.9 ENSMUSG00000032380 ENSMUST00000129778 Dapk2 protein_coding Interval_74992 chr17 59102157 59102375 + 0 NA Intergenic Intergenic 84952 ENSMUSG00000086594.2 ENSMUSG00000086594 ENSMUST00000167453 Nudt12os antisense Interval_159636 chr8 95914185 95917139 + 0 NA intron (ENSMUSG00000110634.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000110634.1, intron 1 of 1) 5088 ENSMUSG00000110634.1 ENSMUSG00000110634 ENSMUST00000212248 Gm45895 lincRNA Interval_9112 chr1 153679423 153680496 + 0 NA intron (ENSMUSG00000042671.12, intron 5 of 6) protein_coding-intron (ENSMUSG00000042671.12, intron 5 of 6) 12697 ENSMUSG00000100945.1 ENSMUSG00000100945 ENSMUST00000187154 Gm29529 antisense Interval_116225 chr4 108847656 108849106 + 0 NA exon (ENSMUSG00000073775.4, exon 1 of 1) protein_coding-exon (ENSMUSG00000073775.4, exon 1 of 1) 596 ENSMUSG00000073775.4 ENSMUSG00000073775 ENSMUST00000102738 Kti12 protein_coding Interval_145729 chr7 37853430 37853747 + 0 NA Intergenic Intergenic -29241 ENSMUSG00000064591.1 ENSMUSG00000064591 ENSMUST00000082657 Gm22302 snRNA Interval_74562 chr17 53455755 53456574 + 0 NA intron (ENSMUSG00000023931.5, intron 1 of 12) protein_coding-intron (ENSMUSG00000023931.5, intron 1 of 12) 7142 ENSMUSG00000023931.5 ENSMUSG00000023931 ENSMUST00000233544 Efhb protein_coding Interval_54108 chr14 65374750 65375887 + 0 NA promoter-TSS (ENSMUSG00000034522.10) protein_coding-promoter-TSS (ENSMUSG00000034522.10) -15908 ENSMUSG00000114357.1 ENSMUSG00000114357 ENSMUST00000225691 Gm48449 antisense Interval_96063 chr2 119520779 119521187 + 0 NA intron (ENSMUSG00000048647.9, intron 10 of 10) protein_coding-intron (ENSMUSG00000048647.9, intron 12 of 12) -11754 ENSMUSG00000082369.1 ENSMUSG00000082369 ENSMUST00000119645 Gm14208 processed_pseudogene Interval_31461 chr11 100808887 100809248 + 0 NA intron (ENSMUSG00000020919.11, intron 1 of 5) protein_coding-intron (ENSMUSG00000020919.11, intron 1 of 18) -34267 ENSMUSG00000089049.1 ENSMUSG00000089049 ENSMUST00000158424 Gm24358 misc_RNA Interval_40118 chr12 101718019 101719095 + 0 NA promoter-TSS (ENSMUSG00000021187.14) protein_coding-promoter-TSS (ENSMUSG00000021187.14) -34 ENSMUSG00000021187.14 ENSMUSG00000021187 ENSMUST00000160830 Tc2n protein_coding Interval_10421 chr1 170696282 170697204 + 0 NA Intergenic Intergenic 52211 ENSMUSG00000038463.8 ENSMUSG00000038463 ENSMUST00000046792 Olfml2b protein_coding Interval_14420 chr10 33382710 33383081 + 0 NA intron (ENSMUSG00000019787.9, intron 21 of 37) protein_coding-intron (ENSMUSG00000019787.9, intron 21 of 37) -29181 ENSMUSG00000112521.1 ENSMUSG00000112521 ENSMUST00000218403 Gm29884 processed_pseudogene Interval_45671 chr13 56741679 56741876 + 0 NA exon (ENSMUSG00000021540.16, exon 7 of 7) protein_coding-exon (ENSMUSG00000021540.16, exon 7 of 7) 12050 ENSMUSG00000110086.1 ENSMUSG00000110086 ENSMUST00000210744 Gm45623 protein_coding Interval_105953 chr3 90276745 90277905 + 0 NA promoter-TSS (ENSMUSG00000042404.16) protein_coding-promoter-TSS (ENSMUSG00000042404.16) 7176 ENSMUSG00000099199.1 ENSMUSG00000099199 ENSMUST00000183900 Mir7012 miRNA Interval_50414 chr14 12628789 12628996 + 0 NA intron (ENSMUSG00000054423.14, intron 3 of 28) protein_coding-intron (ENSMUSG00000054423.14, intron 3 of 28) 10224 ENSMUSG00000114453.1 ENSMUSG00000114453 ENSMUST00000225784 Gm17805 processed_pseudogene Interval_133410 chr6 4816874 4817178 + 0 NA promoter-TSS (ENSMUSG00000093570.3) lincRNA-promoter-TSS (ENSMUSG00000093570.3) -9592 ENSMUSG00000093570.3 ENSMUSG00000093570 ENSMUST00000176391 Gm20714 lincRNA Interval_72763 chr17 32025346 32026133 + 0 NA intron (ENSMUSG00000002076.12, intron 3 of 8) protein_coding-intron (ENSMUSG00000002076.12, intron 2 of 7) -2199 ENSMUSG00000088406.1 ENSMUSG00000088406 ENSMUST00000157781 Gm25883 misc_RNA Interval_128200 chr5 111656530 111656981 + 0 NA Intergenic Intergenic 63139 ENSMUSG00000104833.1 ENSMUSG00000104833 ENSMUST00000198964 Gm42489 lincRNA Interval_80194 chr18 38166714 38167097 + 0 NA Intergenic Intergenic 36935 ENSMUSG00000051375.15 ENSMUSG00000051375 ENSMUST00000193828 Pcdh1 protein_coding Interval_113304 chr4 53320877 53321756 + 0 NA Intergenic Intergenic 13090 ENSMUSG00000083735.1 ENSMUSG00000083735 ENSMUST00000119750 Gm12495 processed_pseudogene Interval_65608 chr16 24033189 24033768 + 0 NA Intergenic Intergenic -6428 ENSMUSG00000116290.1 ENSMUSG00000116290 ENSMUST00000230357 Gm49518 lincRNA Interval_35619 chr12 25830430 25831962 + 0 NA Intergenic Intergenic -10655 ENSMUSG00000114111.1 ENSMUSG00000114111 ENSMUST00000221179 Gm9321 processed_pseudogene Interval_147007 chr7 57975979 57976927 + 0 NA Intergenic Intergenic -28752 ENSMUSG00000077784.1 ENSMUSG00000077784 ENSMUST00000104596 Gm23911 snoRNA Interval_55693 chr14 99071413 99071830 + 0 NA intron (ENSMUSG00000022070.7, intron 11 of 12) protein_coding-intron (ENSMUSG00000022070.7, intron 10 of 11) 7062 ENSMUSG00000033166.11 ENSMUSG00000033166 ENSMUST00000227001 Dis3 protein_coding Interval_3475 chr1 58695362 58695862 + 0 NA intron (ENSMUSG00000047528.13, intron 1 of 12) protein_coding-intron (ENSMUSG00000047528.13, intron 1 of 14) -3170 ENSMUSG00000047528.13 ENSMUSG00000047528 ENSMUST00000188839 Flacc1 protein_coding Interval_7785 chr1 133667537 133668506 + 0 NA Intergenic Intergenic -6641 ENSMUSG00000116275.1 ENSMUSG00000116275 ENSMUST00000027736 Zc3h11a protein_coding Interval_147002 chr7 57728845 57729017 + 0 NA intron (ENSMUSG00000033676.13, intron 3 of 8) protein_coding-intron (ENSMUSG00000033676.13, intron 3 of 8) -9770 ENSMUSG00000109439.1 ENSMUSG00000109439 ENSMUST00000209070 Gm44853 processed_pseudogene Interval_16875 chr10 69386618 69387202 + 0 NA Intergenic Intergenic -12086 ENSMUSG00000069601.14 ENSMUSG00000069601 ENSMUST00000183001 Ank3 protein_coding Interval_87757 chr19 55665840 55666702 + 0 NA Intergenic Intergenic -75993 ENSMUSG00000024985.20 ENSMUSG00000024985 ENSMUST00000148666 Tcf7l2 protein_coding Interval_63862 chr16 4056493 4057459 + 0 NA TTS (ENSMUSG00000093262.1) miRNA-TTS (ENSMUSG00000093262.1) 521 ENSMUSG00000093262.1 ENSMUSG00000093262 ENSMUST00000175521 Gm23413 miRNA Interval_49553 chr13 112909884 112910086 + 0 NA intron (ENSMUSG00000016018.4, intron 8 of 26) protein_coding-intron (ENSMUSG00000016018.4, intron 8 of 26) 17387 ENSMUSG00000016018.4 ENSMUSG00000016018 ENSMUST00000225037 Mtrex protein_coding Interval_110550 chr4 3823071 3823494 + 0 NA Intergenic Intergenic 11864 ENSMUSG00000088351.1 ENSMUSG00000088351 ENSMUST00000157726 Gm24016 snoRNA Interval_85266 chr19 24241413 24242891 + 0 NA Intergenic Intergenic 36019 ENSMUSG00000059363.10 ENSMUSG00000059363 ENSMUST00000132688 Fxn protein_coding Interval_144655 chr7 27359868 27360226 + 0 NA exon (ENSMUSG00000011751.16, exon 34 of 36) protein_coding-exon (ENSMUSG00000011751.16, exon 34 of 36) -2628 ENSMUSG00000092367.1 ENSMUSG00000092367 ENSMUST00000126587 Gm20479 protein_coding Interval_57620 chr15 12876355 12877858 + 0 NA intron (ENSMUSG00000022191.16, intron 15 of 34) protein_coding-intron (ENSMUSG00000022191.16, intron 15 of 34) 35010 ENSMUSG00000104911.1 ENSMUSG00000104911 ENSMUST00000198820 Gm47288 miRNA Interval_62650 chr15 95957727 95958018 + 0 NA intron (ENSMUSG00000064210.7, intron 17 of 20) protein_coding-intron (ENSMUSG00000064210.7, intron 16 of 19) 36257 ENSMUSG00000115049.1 ENSMUSG00000115049 ENSMUST00000227616 Gm49172 processed_transcript Interval_51527 chr14 29807974 29808240 + 0 NA intron (ENSMUSG00000114774.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000114774.1, intron 1 of 3) 44301 ENSMUSG00000114774.1 ENSMUSG00000114774 ENSMUST00000224736 Gm35281 lincRNA Interval_71844 chr17 26466788 26467386 + 0 NA TTS (ENSMUSG00000118107.1) lincRNA-TTS (ENSMUSG00000118107.1) -2930 ENSMUSG00000118232.1 ENSMUSG00000118232 ENSMUST00000236943 Gm50269 lincRNA Interval_22334 chr11 8881503 8881994 + 0 NA intron (ENSMUSG00000046634.12, intron 18 of 42) protein_coding-intron (ENSMUSG00000046634.12, intron 25 of 49) 3548 ENSMUSG00000082095.1 ENSMUSG00000082095 ENSMUST00000119652 Gm11991 processed_pseudogene Interval_4881 chr1 81310053 81310323 + 0 NA intron (ENSMUSG00000054976.14, intron 6 of 6) protein_coding-intron (ENSMUSG00000054976.14, intron 6 of 6) 212153 ENSMUSG00000104029.1 ENSMUSG00000104029 ENSMUST00000192484 Gm37210 TEC Interval_149796 chr7 101622102 101622324 + 0 NA Intergenic Intergenic -36613 ENSMUSG00000030651.5 ENSMUSG00000030651 ENSMUST00000063920 Art2b protein_coding Interval_139667 chr6 106520435 106520710 + 0 NA intron (ENSMUSG00000064293.14, intron 1 of 15) protein_coding-intron (ENSMUSG00000064293.14, intron 8 of 15) -134931 ENSMUSG00000064293.14 ENSMUSG00000064293 ENSMUST00000142626 Cntn4 protein_coding Interval_113288 chr4 53152343 53152595 + 0 NA intron (ENSMUSG00000015243.4, intron 1 of 49) protein_coding-intron (ENSMUSG00000015243.4, intron 1 of 49) 65092 ENSMUSG00000087192.7 ENSMUSG00000087192 ENSMUST00000139222 4930412L05Rik processed_transcript Interval_132333 chr5 144247917 144248206 + 0 NA intron (ENSMUSG00000047843.16, intron 1 of 2) protein_coding-intron (ENSMUSG00000047843.16, intron 1 of 2) -7164 ENSMUSG00000047843.16 ENSMUSG00000047843 ENSMUST00000056578 Bri3 protein_coding Interval_82772 chr18 76992567 76992860 + 0 NA TTS (ENSMUSG00000025420.13) protein_coding-TTS (ENSMUSG00000025420.13) 48329 ENSMUSG00000025421.15 ENSMUSG00000025421 ENSMUST00000148955 Hdhd2 protein_coding Interval_48821 chr13 103703191 103704066 + 0 NA intron (ENSMUSG00000114206.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000114206.1, intron 1 of 3) 3991 ENSMUSG00000114206.1 ENSMUSG00000114206 ENSMUST00000225860 Gm30551 lincRNA Interval_127554 chr5 105181314 105183535 + 0 NA Intergenic Intergenic 39552 ENSMUSG00000105096.1 ENSMUSG00000105096 ENSMUST00000196634 Gbp10 protein_coding Interval_70461 chr17 10374057 10374690 + 0 NA Intergenic Intergenic 49771 ENSMUSG00000099384.6 ENSMUSG00000099384 ENSMUST00000188715 1700110C19Rik lincRNA Interval_165317 chr9 46257270 46258338 + 0 NA Intergenic Intergenic -11274 ENSMUSG00000032079.12 ENSMUSG00000032079 ENSMUST00000034584 Apoa5 protein_coding Interval_174527 chrX 156711590 156711937 + 0 NA Intergenic Intergenic -31960 ENSMUSG00000083573.1 ENSMUSG00000083573 ENSMUST00000118798 Gm7312 processed_pseudogene Interval_40911 chr12 109830366 109830732 + 0 NA Intergenic Intergenic 3546 ENSMUSG00000113711.1 ENSMUSG00000113711 ENSMUST00000221611 Gm9661 processed_pseudogene Interval_123102 chr5 29719459 29719741 + 0 NA exon (ENSMUSG00000105032.1, exon 1 of 1) processed_pseudogene-exon (ENSMUSG00000105032.1, exon 1 of 1) 106 ENSMUSG00000105032.1 ENSMUSG00000105032 ENSMUST00000198531 Gm43117 processed_pseudogene Interval_71101 chr17 18010988 18011618 + 0 NA Intergenic Intergenic -10430 ENSMUSG00000048062.4 ENSMUSG00000048062 ENSMUST00000095651 Fpr-rs4 protein_coding Interval_67704 chr16 56091110 56091328 + 0 NA intron (ENSMUSG00000052917.15, intron 3 of 7) protein_coding-intron (ENSMUSG00000052917.15, intron 3 of 6) 5620 ENSMUSG00000116999.1 ENSMUSG00000116999 ENSMUST00000232486 Gm18723 processed_pseudogene Interval_140218 chr6 115619934 115621024 + 0 NA promoter-TSS (ENSMUSG00000000441.17) protein_coding-promoter-TSS (ENSMUSG00000000441.17) 6588 ENSMUSG00000000441.17 ENSMUSG00000000441 ENSMUST00000127503 Raf1 protein_coding Interval_100793 chr2 172557179 172557379 + 0 NA exon (ENSMUSG00000028640.11, exon 7 of 7) protein_coding-exon (ENSMUSG00000028640.11, exon 7 of 7) 6288 ENSMUSG00000028640.11 ENSMUSG00000028640 ENSMUST00000142633 Tfap2c protein_coding Interval_39549 chr12 90364778 90365112 + 0 NA intron (ENSMUSG00000113884.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000113884.1, intron 1 of 1) 693 ENSMUSG00000113884.1 ENSMUSG00000113884 ENSMUST00000222858 Gm2270 lincRNA Interval_47342 chr13 81691590 81692518 + 0 NA intron (ENSMUSG00000035834.11, intron 3 of 7) protein_coding-intron (ENSMUSG00000035834.11, intron 3 of 7) -4769 ENSMUSG00000035834.11 ENSMUSG00000035834 ENSMUST00000160331 Polr3g protein_coding Interval_150203 chr7 107999519 108000131 + 0 NA Intergenic Intergenic 13132 ENSMUSG00000096151.2 ENSMUSG00000096151 ENSMUST00000091605 Olfr477 protein_coding Interval_153748 chr8 6318150 6318377 + 0 NA Intergenic Intergenic -94301 ENSMUSG00000088255.1 ENSMUSG00000088255 ENSMUST00000157630 Gm24288 snoRNA Interval_111139 chr4 12959352 12960128 + 0 NA intron (ENSMUSG00000055963.12, intron 1 of 2) protein_coding-intron (ENSMUSG00000055963.12, intron 2 of 4) 52882 ENSMUSG00000055963.12 ENSMUSG00000055963 ENSMUST00000156536 Triqk protein_coding Interval_96854 chr2 128960463 128960686 + 0 NA Intergenic Intergenic -2713 ENSMUSG00000087267.1 ENSMUSG00000087267 ENSMUST00000156275 4933427J07Rik antisense Interval_92565 chr2 60722584 60723467 + 0 NA promoter-TSS (ENSMUSG00000026971.15) protein_coding-promoter-TSS (ENSMUSG00000026971.15) -49299 ENSMUSG00000026971.15 ENSMUSG00000026971 ENSMUST00000142696 Itgb6 protein_coding Interval_19493 chr10 100229685 100230189 + 0 NA Intergenic Intergenic -25595 ENSMUSG00000112633.1 ENSMUSG00000112633 ENSMUST00000220057 Gm47627 TEC Interval_157926 chr8 76352402 76352793 + 0 NA intron (ENSMUSG00000110485.1, intron 1 of 9) lincRNA-intron (ENSMUSG00000110485.1, intron 1 of 9) 43127 ENSMUSG00000110595.1 ENSMUSG00000110595 ENSMUST00000212126 Gm7990 processed_pseudogene Interval_30896 chr11 97114494 97115757 + 0 NA exon (ENSMUSG00000001444.2, exon 1 of 6) protein_coding-exon (ENSMUSG00000001444.2, exon 1 of 6) 206 ENSMUSG00000001444.2 ENSMUSG00000001444 ENSMUST00000001484 Tbx21 protein_coding Interval_126006 chr5 76784348 76785239 + 0 NA intron (ENSMUSG00000036377.19, intron 3 of 11) protein_coding-intron (ENSMUSG00000036377.19, intron 2 of 10) -42280 ENSMUSG00000083874.1 ENSMUSG00000083874 ENSMUST00000121248 Gm7494 processed_pseudogene Interval_14912 chr10 41023074 41023370 + 0 NA Intergenic Intergenic -11973 ENSMUSG00000111098.1 ENSMUSG00000111098 ENSMUST00000214667 Gm48057 lincRNA Interval_11070 chr1 179144297 179144501 + 0 NA intron (ENSMUSG00000055067.15, intron 5 of 11) protein_coding-intron (ENSMUSG00000055067.15, intron 2 of 8) -226785 ENSMUSG00000089713.1 ENSMUSG00000089713 ENSMUST00000162545 Gm16564 antisense Interval_61403 chr15 81370102 81371216 + 0 NA intron (ENSMUSG00000022403.15, intron 9 of 11) protein_coding-intron (ENSMUSG00000022403.15, intron 9 of 11) -9882 ENSMUSG00000022404.8 ENSMUSG00000022404 ENSMUST00000231078 Slc25a17 protein_coding Interval_158010 chr8 77990753 77991768 + 0 NA Intergenic Intergenic -52750 ENSMUSG00000110382.1 ENSMUSG00000110382 ENSMUST00000209933 Gm29895 lincRNA Interval_153358 chr7 143892207 143892963 + 0 NA TTS (ENSMUSG00000031085.16) protein_coding-TTS (ENSMUSG00000031085.16) 25714 ENSMUSG00000031085.16 ENSMUSG00000031085 ENSMUST00000207388 Acte1 protein_coding Interval_104785 chr3 73147048 73147635 + 0 NA TTS (ENSMUSG00000077050.1) miRNA-TTS (ENSMUSG00000077050.1) 492 ENSMUSG00000077050.1 ENSMUSG00000077050 ENSMUST00000103862 Gm24544 miRNA Interval_73408 chr17 37026616 37029478 + 0 NA Intergenic Intergenic -4848 ENSMUSG00000076439.12 ENSMUSG00000076439 ENSMUST00000167275 Mog protein_coding Interval_16458 chr10 62987286 62987777 + 0 NA intron (ENSMUSG00000020070.18, intron 2 of 2) protein_coding-intron (ENSMUSG00000020070.18, intron 2 of 10) 6103 ENSMUSG00000020070.18 ENSMUSG00000020070 ENSMUST00000143726 Rufy2 protein_coding Interval_147894 chr7 75194305 75194901 + 0 NA intron (ENSMUSG00000053025.13, intron 2 of 12) protein_coding-intron (ENSMUSG00000053025.13, intron 2 of 12) -46877 ENSMUSG00000053025.13 ENSMUSG00000053025 ENSMUST00000206236 Sv2b protein_coding Interval_24031 chr11 29652543 29654919 + 0 NA Intergenic Intergenic -8222 ENSMUSG00000084850.1 ENSMUSG00000084850 ENSMUST00000125194 Gm12092 lincRNA Interval_86929 chr19 44965800 44966169 + 0 NA intron (ENSMUSG00000118204.1, intron 2 of 3) protein_coding-intron (ENSMUSG00000036097.8, intron 11 of 19) 18545 ENSMUSG00000118204.1 ENSMUSG00000118204 ENSMUST00000236202 4930414N06Rik antisense Interval_166388 chr9 58835097 58835325 + 0 NA intron (ENSMUSG00000032338.9, intron 1 of 7) protein_coding-intron (ENSMUSG00000032338.9, intron 1 of 7) 11799 ENSMUSG00000032338.9 ENSMUSG00000032338 ENSMUST00000034889 Hcn4 protein_coding Interval_101422 chr2 181272397 181272627 + 0 NA intron (ENSMUSG00000038705.13, intron 2 of 2) protein_coding-intron (ENSMUSG00000038705.13, intron 2 of 9) 15519 ENSMUSG00000038705.13 ENSMUSG00000038705 ENSMUST00000147665 Gmeb2 protein_coding Interval_17349 chr10 76025163 76025748 + 0 NA Intergenic Intergenic -7195 ENSMUSG00000049764.8 ENSMUSG00000049764 ENSMUST00000061617 Zfp280b protein_coding Interval_162813 chr9 9384021 9384854 + 0 NA intron (ENSMUSG00000111061.1, intron 2 of 3) lincRNA-intron (ENSMUSG00000111061.1, intron 2 of 3) -50155 ENSMUSG00000111317.1 ENSMUSG00000111317 ENSMUST00000217395 Gm47333 processed_pseudogene Interval_4489 chr1 74526404 74526655 + 0 NA intron (ENSMUSG00000026174.9, intron 6 of 6) protein_coding-intron (ENSMUSG00000026174.9, intron 5 of 7) 3002 ENSMUSG00000026174.9 ENSMUSG00000026174 ENSMUST00000147810 Cnot9 protein_coding Interval_60508 chr15 74535456 74536926 + 0 NA intron (ENSMUSG00000034730.17, intron 2 of 30) protein_coding-intron (ENSMUSG00000034730.17, intron 2 of 30) -27630 ENSMUSG00000093340.1 ENSMUSG00000093340 ENSMUST00000175599 Gm26117 miRNA Interval_74833 chr17 56785443 56785894 + 0 NA TTS (ENSMUSG00000024206.15) protein_coding-TTS (ENSMUSG00000024206.15) 15418 ENSMUSG00000090273.3 ENSMUSG00000090273 ENSMUST00000168666 Prr22 protein_coding Interval_53041 chr14 53776729 53777322 + 0 NA promoter-TSS (ENSMUSG00000076858.3) TR_V_gene-promoter-TSS (ENSMUSG00000076858.3) 69 ENSMUSG00000076858.3 ENSMUSG00000076858 ENSMUST00000103670 Trav3-4 TR_V_gene Interval_8175 chr1 136247160 136247351 + 0 NA promoter-TSS (ENSMUSG00000103594.1) lincRNA-promoter-TSS (ENSMUSG00000103594.1) -407 ENSMUSG00000103594.1 ENSMUSG00000103594 ENSMUST00000194339 A430034D21Rik lincRNA Interval_158451 chr8 83799719 83800052 + 0 NA Intergenic Intergenic 46967 ENSMUSG00000084682.1 ENSMUSG00000084682 ENSMUST00000122733 Gm22024 misc_RNA Interval_90620 chr2 31520961 31522117 + 0 NA TTS (ENSMUSG00000076441.9) protein_coding-TTS (ENSMUSG00000076441.9) 20813 ENSMUSG00000076441.9 ENSMUSG00000076441 ENSMUST00000130195 Ass1 protein_coding Interval_4836 chr1 80141597 80141842 + 0 NA Intergenic Intergenic 6253 ENSMUSG00000096297.1 ENSMUSG00000096297 ENSMUST00000179111 Gm23934 snRNA Interval_122121 chr5 17465748 17466280 + 0 NA Intergenic Intergenic -10084 ENSMUSG00000058643.3 ENSMUSG00000058643 ENSMUST00000076099 Speer4f1 protein_coding Interval_124612 chr5 52360264 52361477 + 0 NA Intergenic Intergenic -2921 ENSMUSG00000072941.5 ENSMUSG00000072941 ENSMUST00000101208 Sod3 protein_coding Interval_102114 chr3 17847799 17851015 + 0 NA Intergenic Intergenic -45660 ENSMUSG00000087893.1 ENSMUSG00000087893 ENSMUST00000157268 Gm23441 snRNA Interval_66323 chr16 33154496 33155247 + 0 NA Intergenic Intergenic -14623 ENSMUSG00000089109.1 ENSMUSG00000089109 ENSMUST00000158484 Gm23916 ribozyme Interval_2045 chr1 36088245 36090432 + 0 NA intron (ENSMUSG00000045216.7, intron 1 of 1) protein_coding-intron (ENSMUSG00000045216.7, intron 1 of 1) -12352 ENSMUSG00000045216.7 ENSMUSG00000045216 ENSMUST00000194670 Hs6st1 protein_coding Interval_35780 chr12 29356795 29358042 + 0 NA Intergenic Intergenic -39850 ENSMUSG00000112776.1 ENSMUSG00000112776 ENSMUST00000218409 Gm6989 processed_pseudogene Interval_173534 chrX 98936543 98938459 + 0 NA promoter-TSS (ENSMUSG00000047694.12) protein_coding-promoter-TSS (ENSMUSG00000047694.12) 228 ENSMUSG00000047694.12 ENSMUSG00000047694 ENSMUST00000140479 Yipf6 protein_coding Interval_25691 chr11 50803221 50803949 + 0 NA exon (ENSMUSG00000036545.9, exon 22 of 22) protein_coding-exon (ENSMUSG00000036545.9, exon 22 of 22) -6066 ENSMUSG00000088205.1 ENSMUSG00000088205 ENSMUST00000157580 Gm23392 rRNA Interval_120707 chr4 150212153 150213124 + 0 NA Intergenic Intergenic -15397 ENSMUSG00000082140.1 ENSMUSG00000082140 ENSMUST00000117930 Gm13094 processed_pseudogene Interval_23 GL456211.1 111694 114982 + 0 NA NA NA NA NA Interval_80723 chr18 46590320 46590697 + 0 NA exon (ENSMUSG00000033184.14, exon 2 of 2) protein_coding-exon (ENSMUSG00000033184.14, exon 2 of 2) 7027 ENSMUSG00000033184.14 ENSMUSG00000033184 ENSMUST00000151189 Tmed7 protein_coding Interval_70121 chr17 5471241 5472701 + 0 NA Intergenic Intergenic 10993 ENSMUSG00000116691.1 ENSMUSG00000116691 ENSMUST00000231799 Gm8363 processed_pseudogene Interval_30846 chr11 96847133 96847522 + 0 NA Intergenic Intergenic -2543 ENSMUSG00000018672.15 ENSMUSG00000018672 ENSMUST00000147710 Copz2 protein_coding Interval_127724 chr5 107095580 107095774 + 0 NA Intergenic Intergenic 40011 ENSMUSG00000106643.1 ENSMUSG00000106643 ENSMUST00000199780 Gm43422 TEC Interval_73531 chr17 39574318 39575022 + 0 NA Intergenic Intergenic 38528 ENSMUSG00000096345.1 ENSMUSG00000096345 ENSMUST00000178037 Esp16 protein_coding Interval_156200 chr8 45934617 45935361 + 0 NA intron (ENSMUSG00000071104.10, intron 1 of 4) protein_coding-intron (ENSMUSG00000071104.10, intron 1 of 6) 347 ENSMUSG00000071104.10 ENSMUSG00000071104 ENSMUST00000174815 Ccdc110 protein_coding Interval_99813 chr2 165074029 165075230 + 0 NA Intergenic Intergenic 16121 ENSMUSG00000078935.1 ENSMUSG00000078935 ENSMUST00000109304 1700025C18Rik protein_coding Interval_30956 chr11 97412046 97413120 + 0 NA Intergenic Intergenic -23702 ENSMUSG00000049807.16 ENSMUSG00000049807 ENSMUST00000093940 Arhgap23 protein_coding Interval_50338 chr14 11911437 11911822 + 0 NA intron (ENSMUSG00000021745.14, intron 2 of 3) protein_coding-intron (ENSMUSG00000021745.14, intron 2 of 29) 6950 ENSMUSG00000114267.1 ENSMUSG00000114267 ENSMUST00000225771 Gm48600 TEC Interval_34691 chr12 8706870 8707116 + 0 NA intron (ENSMUSG00000020594.14, intron 3 of 19) protein_coding-intron (ENSMUSG00000020594.14, intron 3 of 19) 32859 ENSMUSG00000020594.14 ENSMUSG00000020594 ENSMUST00000171608 Pum2 protein_coding Interval_154895 chr8 24917309 24918785 + 0 NA intron (ENSMUSG00000037437.18, intron 6 of 21) protein_coding-intron (ENSMUSG00000037437.18, intron 6 of 19) -20253 ENSMUSG00000088736.1 ENSMUSG00000088736 ENSMUST00000158111 Gm23898 snRNA Interval_104454 chr3 65884503 65885416 + 0 NA Intergenic Intergenic -12678 ENSMUSG00000103620.1 ENSMUSG00000103620 ENSMUST00000195243 Gm37359 antisense Interval_118125 chr4 129095038 129095680 + 0 NA Intergenic Intergenic -11510 ENSMUSG00000028786.15 ENSMUSG00000028786 ENSMUST00000148979 Tmem54 protein_coding Interval_21793 chr11 4378109 4378423 + 0 NA intron (ENSMUSG00000020419.11, intron 10 of 10) protein_coding-intron (ENSMUSG00000020419.11, intron 11 of 11) 48996 ENSMUSG00000020419.11 ENSMUSG00000020419 ENSMUST00000124249 Hormad2 protein_coding Interval_11526 chr1 182482824 182484207 + 0 NA promoter-TSS (ENSMUSG00000102234.1) antisense-promoter-TSS (ENSMUSG00000102234.1) -2021 ENSMUSG00000026509.15 ENSMUSG00000026509 ENSMUST00000192483 Capn2 protein_coding Interval_96252 chr2 120980956 120982506 + 0 NA intron (ENSMUSG00000054484.14, intron 1 of 4) protein_coding-intron (ENSMUSG00000054484.14, intron 4 of 13) -2639 ENSMUSG00000054484.14 ENSMUSG00000054484 ENSMUST00000135599 Tmem62 protein_coding Interval_156558 chr8 51569907 51570200 + 0 NA Intergenic Intergenic 116658 ENSMUSG00000110085.1 ENSMUSG00000110085 ENSMUST00000210806 Gm17911 processed_pseudogene Interval_12823 chr10 5850220 5851028 + 0 NA intron (ENSMUSG00000019775.17, intron 2 of 4) protein_coding-intron (ENSMUSG00000019775.17, intron 4 of 6) -34869 ENSMUSG00000019774.8 ENSMUSG00000019774 ENSMUST00000145687 Mtrf1l protein_coding Interval_99162 chr2 157675342 157675783 + 0 NA Intergenic Intergenic 38239 ENSMUSG00000077290.1 ENSMUSG00000077290 ENSMUST00000104102 Gm25407 snoRNA Interval_142245 chr6 139854793 139855136 + 0 NA intron (ENSMUSG00000030228.18, intron 9 of 20) protein_coding-intron (ENSMUSG00000030228.18, intron 4 of 15) 24577 ENSMUSG00000107870.1 ENSMUSG00000107870 ENSMUST00000204549 Gm43940 TEC Interval_37510 chr12 69474168 69475564 + 0 NA intron (ENSMUSG00000113035.1, intron 1 of 1) processed_transcript-intron (ENSMUSG00000113035.1, intron 1 of 2) 681 ENSMUSG00000113035.1 ENSMUSG00000113035 ENSMUST00000222980 5830428M24Rik processed_transcript Interval_118086 chr4 128883451 128884964 + 0 NA exon (ENSMUSG00000041000.8, exon 1 of 5) protein_coding-exon (ENSMUSG00000041000.8, exon 1 of 5) 627 ENSMUSG00000041000.8 ENSMUSG00000041000 ENSMUST00000035667 Trim62 protein_coding Interval_87955 chr19 57365793 57367655 + 0 NA intron (ENSMUSG00000033478.5, intron 1 of 14) protein_coding-intron (ENSMUSG00000033478.5, intron 1 of 16) 5694 ENSMUSG00000033478.5 ENSMUSG00000033478 ENSMUST00000237170 Fam160b1 protein_coding Interval_62944 chr15 98070931 98072019 + 0 NA intron (ENSMUSG00000033075.17, intron 6 of 8) protein_coding-intron (ENSMUSG00000033075.17, intron 6 of 17) 1723 ENSMUSG00000088325.1 ENSMUSG00000088325 ENSMUST00000157700 Gm25668 snoRNA Interval_85742 chr19 30221548 30222284 + 0 NA Intergenic Intergenic -11026 ENSMUSG00000024863.6 ENSMUSG00000024863 ENSMUST00000025797 Mbl2 protein_coding Interval_13111 chr10 11487267 11487498 + 0 NA Intergenic Intergenic -17914 ENSMUSG00000111949.1 ENSMUSG00000111949 ENSMUST00000219639 Gm48679 processed_pseudogene Interval_131961 chr5 141111881 141112073 + 0 NA Intergenic Intergenic 31546 ENSMUSG00000093344.1 ENSMUSG00000093344 ENSMUST00000175603 Gm26113 miRNA Interval_148374 chr7 80849810 80850029 + 0 NA Intergenic Intergenic -11032 ENSMUSG00000038797.13 ENSMUSG00000038797 ENSMUST00000155128 Zscan2 protein_coding Interval_146077 chr7 43684954 43685517 + 0 NA Intergenic Intergenic -5183 ENSMUSG00000044737.6 ENSMUSG00000044737 ENSMUST00000056329 Klk14 protein_coding Interval_103318 chr3 38578421 38578625 + 0 NA Intergenic Intergenic -19855 ENSMUSG00000105360.1 ENSMUSG00000105360 ENSMUST00000198301 Gm7824 processed_pseudogene Interval_43127 chr13 24499342 24499891 + 0 NA Intergenic Intergenic -1909 ENSMUSG00000036006.20 ENSMUSG00000036006 ENSMUST00000177489 Ripor2 protein_coding Interval_163762 chr9 25419276 25419516 + 0 NA Intergenic Intergenic -31066 ENSMUSG00000111600.1 ENSMUSG00000111600 ENSMUST00000214336 Gm8049 processed_pseudogene Interval_4163 chr1 71061682 71062342 + 0 NA intron (ENSMUSG00000026196.7, intron 6 of 10) protein_coding-intron (ENSMUSG00000026196.7, intron 6 of 10) -21982 ENSMUSG00000089965.1 ENSMUSG00000089965 ENSMUST00000159588 Gm16236 processed_pseudogene Interval_66237 chr16 32520125 32520805 + 0 NA intron (ENSMUSG00000052363.8, intron 2 of 3) protein_coding-intron (ENSMUSG00000052363.8, intron 2 of 3) 24189 ENSMUSG00000052363.8 ENSMUSG00000052363 ENSMUST00000160832 Zdhhc19 protein_coding Interval_35268 chr12 19281142 19281635 + 0 NA Intergenic Intergenic -7174 ENSMUSG00000113570.1 ENSMUSG00000113570 ENSMUST00000220644 Gm5953 TEC Interval_44502 chr13 45483839 45484122 + 0 NA Intergenic Intergenic 2350 ENSMUSG00000089211.1 ENSMUSG00000089211 ENSMUST00000158586 Gm23387 snRNA Interval_87065 chr19 45900768 45900975 + 0 NA intron (ENSMUSG00000039901.10, intron 20 of 25) protein_coding-intron (ENSMUSG00000039901.10, intron 20 of 25) -22745 ENSMUSG00000117972.1 ENSMUSG00000117972 ENSMUST00000236365 Gm6813 processed_pseudogene Interval_93485 chr2 73472260 73472532 + 0 NA intron (ENSMUSG00000086069.1, intron 1 of 1) protein_coding-intron (ENSMUSG00000075284.10, intron 1 of 7) 12691 ENSMUSG00000086069.1 ENSMUSG00000086069 ENSMUST00000145170 Gm13708 lincRNA Interval_18325 chr10 84931503 84932018 + 0 NA intron (ENSMUSG00000035620.15, intron 2 of 6) protein_coding-intron (ENSMUSG00000035620.15, intron 2 of 9) -5633 ENSMUSG00000035620.15 ENSMUSG00000035620 ENSMUST00000214820 Ric8b protein_coding Interval_109881 chr3 149369113 149369848 + 0 NA intron (ENSMUSG00000106515.4, intron 1 of 3) lincRNA-intron (ENSMUSG00000106515.4, intron 1 of 3) -28472 ENSMUSG00000089269.1 ENSMUSG00000089269 ENSMUST00000158644 Gm26468 snRNA Interval_35251 chr12 19000452 19001059 + 0 NA Intergenic Intergenic 9272 ENSMUSG00000113040.1 ENSMUSG00000113040 ENSMUST00000221420 Gm9249 unprocessed_pseudogene Interval_147120 chr7 63444225 63445402 + 0 NA promoter-TSS (ENSMUSG00000033510.14) protein_coding-promoter-TSS (ENSMUSG00000033510.14) -284 ENSMUSG00000097682.1 ENSMUSG00000097682 ENSMUST00000181327 4930554H23Rik lincRNA Interval_32386 chr11 107275834 107277346 + 0 NA intron (ENSMUSG00000040430.18, intron 5 of 7) protein_coding-intron (ENSMUSG00000040430.18, intron 4 of 7) -54118 ENSMUSG00000081995.1 ENSMUSG00000081995 ENSMUST00000119399 Gm11719 processed_pseudogene Interval_64518 chr16 13023045 13023252 + 0 NA Intergenic Intergenic -71685 ENSMUSG00000116170.1 ENSMUSG00000116170 ENSMUST00000230534 Gm6332 processed_pseudogene Interval_126650 chr5 91711992 91713520 + 0 NA Intergenic Intergenic 25323 ENSMUSG00000107261.1 ENSMUSG00000107261 ENSMUST00000202320 Trmt112-ps1 processed_pseudogene Interval_88251 chr19 61155021 61155624 + 0 NA Intergenic Intergenic 9159 ENSMUSG00000070263.1 ENSMUSG00000070263 ENSMUST00000093750 Gm22365 snRNA Interval_73337 chr17 36276830 36277659 + 0 NA Intergenic Intergenic -8549 ENSMUSG00000045409.16 ENSMUSG00000045409 ENSMUST00000172832 Trim39 protein_coding Interval_94878 chr2 99465113 99465532 + 0 NA Intergenic Intergenic -89929 ENSMUSG00000084313.1 ENSMUSG00000084313 ENSMUST00000117921 Gm13809 processed_pseudogene Interval_43908 chr13 37981687 37982040 + 0 NA intron (ENSMUSG00000021427.10, intron 7 of 7) protein_coding-intron (ENSMUSG00000021427.10, intron 7 of 7) 12220 ENSMUSG00000021427.10 ENSMUSG00000021427 ENSMUST00000224399 Ssr1 protein_coding Interval_21894 chr11 5046147 5047038 + 0 NA Intergenic Intergenic 8381 ENSMUSG00000088634.1 ENSMUSG00000088634 ENSMUST00000158009 Gm24958 snoRNA Interval_102886 chr3 32531826 32532408 + 0 NA intron (ENSMUSG00000027668.13, intron 2 of 6) protein_coding-intron (ENSMUSG00000027668.13, intron 2 of 17) -19773 ENSMUSG00000104231.1 ENSMUSG00000104231 ENSMUST00000192741 Gm37592 antisense Interval_66892 chr16 38373557 38374671 + 0 NA TTS (ENSMUSG00000022803.12) protein_coding-TTS (ENSMUSG00000022803.12) 2116 ENSMUSG00000022803.12 ENSMUSG00000022803 ENSMUST00000146342 Popdc2 protein_coding Interval_7607 chr1 132490351 132491502 + 0 NA TTS (ENSMUSG00000026439.14) protein_coding-TTS (ENSMUSG00000026439.14) 13559 ENSMUSG00000026439.14 ENSMUSG00000026439 ENSMUST00000187834 Rbbp5 protein_coding Interval_142285 chr6 140452973 140453267 + 0 NA intron (ENSMUSG00000030231.11, intron 1 of 9) protein_coding-intron (ENSMUSG00000030231.11, intron 3 of 30) 32949 ENSMUSG00000107891.1 ENSMUSG00000107891 ENSMUST00000204085 Gm5051 processed_pseudogene Interval_138191 chr6 86096538 86097103 + 0 NA exon (ENSMUSG00000030000.10, exon 7 of 16) protein_coding-exon (ENSMUSG00000030000.10, exon 7 of 16) -9740 ENSMUSG00000107842.1 ENSMUSG00000107842 ENSMUST00000203624 Gm44089 antisense Interval_138801 chr6 92014863 92016291 + 0 NA intron (ENSMUSG00000087317.1, intron 1 of 1) protein_coding-intron (ENSMUSG00000034037.14, intron 2 of 20) 540 ENSMUSG00000087317.1 ENSMUSG00000087317 ENSMUST00000144105 4930466I24Rik antisense Interval_67726 chr16 56436956 56437621 + 0 NA Intergenic Intergenic -40612 ENSMUSG00000035258.15 ENSMUSG00000035258 ENSMUST00000096012 Abi3bp protein_coding Interval_159558 chr8 95447542 95448961 + 0 NA exon (ENSMUSG00000046707.9, exon 12 of 12) protein_coding-exon (ENSMUSG00000046707.9, exon 12 of 12) -13407 ENSMUSG00000031796.7 ENSMUSG00000031796 ENSMUST00000212131 Cfap20 protein_coding Interval_142164 chr6 137740743 137741858 + 0 NA intron (ENSMUSG00000030224.10, intron 4 of 9) protein_coding-intron (ENSMUSG00000030224.10, intron 4 of 9) -3740 ENSMUSG00000030224.10 ENSMUSG00000030224 ENSMUST00000137235 Strap protein_coding Interval_96194 chr2 120459102 120459475 + 0 NA intron (ENSMUSG00000062646.12, intron 22 of 22) protein_coding-intron (ENSMUSG00000062646.12, intron 23 of 23) 3269 ENSMUSG00000118623.1 ENSMUSG00000118623 ENSMUST00000124129 AL935121.1 protein_coding Interval_2428 chr1 39253009 39254394 + 0 NA intron (ENSMUSG00000026077.15, intron 1 of 20) protein_coding-intron (ENSMUSG00000026077.15, intron 1 of 20) 22864 ENSMUSG00000092553.1 ENSMUSG00000092553 ENSMUST00000174365 Gm20428 processed_pseudogene Interval_125864 chr5 75142950 75143886 + 0 NA intron (ENSMUSG00000107192.1, intron 3 of 3) lincRNA-intron (ENSMUSG00000107192.1, intron 3 of 3) -1860 ENSMUSG00000107258.2 ENSMUSG00000107258 ENSMUST00000202296 Olfr1401-ps1 unprocessed_pseudogene Interval_168916 chr9 88570447 88570663 + 0 NA exon (ENSMUSG00000032425.15, exon 5 of 5) protein_coding-exon (ENSMUSG00000032425.15, exon 5 of 5) -10592 ENSMUSG00000090693.4 ENSMUSG00000090693 ENSMUST00000216686 Trim43a protein_coding Interval_100291 chr2 168194529 168196406 + 0 NA intron (ENSMUSG00000093752.1, intron 9 of 11) protein_coding-intron (ENSMUSG00000051149.15, intron 2 of 4) 11242 ENSMUSG00000051149.15 ENSMUSG00000051149 ENSMUST00000131200 Adnp protein_coding Interval_115981 chr4 106775567 106775949 + 0 NA TTS (ENSMUSG00000081110.1) processed_pseudogene-TTS (ENSMUSG00000081110.1) 942 ENSMUSG00000081110.1 ENSMUSG00000081110 ENSMUST00000121767 Gm12745 processed_pseudogene Interval_86066 chr19 36200937 36201154 + 0 NA intron (ENSMUSG00000117998.1, intron 2 of 3) lincRNA-intron (ENSMUSG00000117998.1, intron 2 of 3) 18465 ENSMUSG00000117998.1 ENSMUSG00000117998 ENSMUST00000236660 Gm32081 lincRNA Interval_155014 chr8 25696568 25696992 + 0 NA intron (ENSMUSG00000054823.16, intron 2 of 9) protein_coding-intron (ENSMUSG00000054823.16, intron 15 of 22) 4634 ENSMUSG00000109679.1 ENSMUSG00000109679 ENSMUST00000210903 Gm45342 TEC Interval_21433 chr10 128578102 128578674 + 0 NA intron (ENSMUSG00000018166.8, intron 12 of 27) protein_coding-intron (ENSMUSG00000018166.8, intron 12 of 27) 6109 ENSMUSG00000098592.1 ENSMUSG00000098592 ENSMUST00000184111 Mir6917 miRNA Interval_161873 chr8 123352230 123354296 + 0 NA intron (ENSMUSG00000010154.7, intron 1 of 13) protein_coding-intron (ENSMUSG00000010154.7, intron 2 of 14) 3012 ENSMUSG00000010154.7 ENSMUSG00000010154 ENSMUST00000212404 Spire2 protein_coding Interval_112547 chr4 43030662 43031903 + 0 NA promoter-TSS (ENSMUSG00000028455.15) protein_coding-promoter-TSS (ENSMUSG00000028455.15) -1368 ENSMUSG00000028455.15 ENSMUSG00000028455 ENSMUST00000126026 Stoml2 protein_coding Interval_168081 chr9 76014593 76015583 + 0 NA promoter-TSS (ENSMUSG00000007908.14) protein_coding-promoter-TSS (ENSMUSG00000007908.14) 104 ENSMUSG00000007908.14 ENSMUSG00000007908 ENSMUST00000117981 Hmgcll1 protein_coding Interval_158643 chr8 84928394 84929635 + 0 NA promoter-TSS (ENSMUSG00000053693.16) protein_coding-promoter-TSS (ENSMUSG00000053693.16) -3381 ENSMUSG00000092826.1 ENSMUSG00000092826 ENSMUST00000175085 Gm24197 miRNA Interval_100682 chr2 171412578 171412765 + 0 NA Intergenic Intergenic -106240 ENSMUSG00000088505.1 ENSMUSG00000088505 ENSMUST00000157880 Gm26489 scaRNA Interval_154769 chr8 23223004 23223538 + 0 NA Intergenic Intergenic 14388 ENSMUSG00000031546.6 ENSMUSG00000031546 ENSMUST00000033950 Gins4 protein_coding Interval_45527 chr13 55668316 55668980 + 0 NA intron (ENSMUSG00000021500.17, intron 15 of 15) protein_coding-intron (ENSMUSG00000021500.17, intron 15 of 21) -1116 ENSMUSG00000021500.17 ENSMUSG00000021500 ENSMUST00000231097 Ddx46 protein_coding Interval_17822 chr10 80275981 80276445 + 0 NA intron (ENSMUSG00000069565.12, intron 4 of 6) protein_coding-intron (ENSMUSG00000069565.12, intron 4 of 11) -1951 ENSMUSG00000098672.1 ENSMUSG00000098672 ENSMUST00000184241 Mir6911 miRNA Interval_150619 chr7 112854196 112855339 + 0 NA intron (ENSMUSG00000055320.18, intron 4 of 7) protein_coding-intron (ENSMUSG00000055320.18, intron 5 of 13) -99195 ENSMUSG00000098132.1 ENSMUSG00000098132 ENSMUST00000182858 Rassf10 protein_coding Interval_4455 chr1 74295374 74296202 + 0 NA promoter-TSS (ENSMUSG00000006301.17) protein_coding-promoter-TSS (ENSMUSG00000006301.17) 147 ENSMUSG00000099931.1 ENSMUSG00000099931 ENSMUST00000187941 Gm29358 sense_intronic Interval_39052 chr12 84710248 84710547 + 0 NA Intergenic Intergenic -11643 ENSMUSG00000071234.3 ENSMUSG00000071234 ENSMUST00000221793 Syndig1l protein_coding Interval_127087 chr5 100200388 100200972 + 0 NA TTS (ENSMUSG00000103927.1) lincRNA-TTS (ENSMUSG00000103927.1) 4069 ENSMUSG00000103927.1 ENSMUSG00000103927 ENSMUST00000194154 Gm9932 lincRNA Interval_144383 chr7 24823530 24823809 + 0 NA intron (ENSMUSG00000011350.15, intron 2 of 10) processed_transcript-intron (ENSMUSG00000011350.15, intron 3 of 11) 4874 ENSMUSG00000011350.15 ENSMUSG00000011350 ENSMUST00000155799 Gm5893 processed_transcript Interval_31358 chr11 100248726 100249263 + 0 NA promoter-TSS (ENSMUSG00000053797.10) protein_coding-promoter-TSS (ENSMUSG00000053797.10) -92 ENSMUSG00000053797.10 ENSMUSG00000053797 ENSMUST00000007280 Krt16 protein_coding Interval_69779 chr16 96235214 96237274 + 0 NA intron (ENSMUSG00000074892.9, intron 1 of 3) protein_coding-intron (ENSMUSG00000074892.9, intron 1 of 3) 35573 ENSMUSG00000040666.19 ENSMUSG00000040666 ENSMUST00000233577 Sh3bgr protein_coding Interval_127364 chr5 103435455 103436777 + 0 NA intron (ENSMUSG00000034573.14, intron 1 of 17) protein_coding-intron (ENSMUSG00000034573.14, intron 1 of 47) -79418 ENSMUSG00000104684.1 ENSMUSG00000104684 ENSMUST00000200007 5430427N15Rik lincRNA Interval_105914 chr3 90064286 90064566 + 0 NA exon (ENSMUSG00000118506.1, exon 3 of 4) protein_coding-exon (ENSMUSG00000118506.1, exon 3 of 4) 1630 ENSMUSG00000118506.1 ENSMUSG00000118506 ENSMUST00000029551 1700094D03Rik protein_coding Interval_89412 chr2 20537827 20538151 + 0 NA intron (ENSMUSG00000036617.17, intron 3 of 3) protein_coding-intron (ENSMUSG00000036617.17, intron 3 of 18) -21815 ENSMUSG00000098575.1 ENSMUSG00000098575 ENSMUST00000183963 Gm27446 misc_RNA Interval_52251 chr14 41033185 41034105 + 0 NA Intergenic Intergenic -20008 ENSMUSG00000114196.1 ENSMUSG00000114196 ENSMUST00000224095 Gm47547 antisense Interval_165884 chr9 54199000 54199264 + 0 NA intron (ENSMUSG00000032274.9, intron 1 of 1) protein_coding-intron (ENSMUSG00000032274.9, intron 1 of 1) -17058 ENSMUSG00000032274.9 ENSMUSG00000032274 ENSMUST00000216974 Cyp19a1 protein_coding Interval_40414 chr12 104726242 104727939 + 0 NA exon (ENSMUSG00000041415.10, exon 3 of 3) protein_coding-exon (ENSMUSG00000041415.10, exon 3 of 3) -5038 ENSMUSG00000041415.10 ENSMUSG00000041415 ENSMUST00000222002 Dicer1 protein_coding Interval_54570 chr14 70725794 70726375 + 0 NA intron (ENSMUSG00000022100.14, intron 1 of 21) protein_coding-intron (ENSMUSG00000022100.14, intron 1 of 27) -18049 ENSMUSG00000022100.14 ENSMUSG00000022100 ENSMUST00000227550 Xpo7 protein_coding Interval_165563 chr9 49507460 49508120 + 0 NA intron (ENSMUSG00000039542.16, intron 18 of 19) protein_coding-intron (ENSMUSG00000039542.16, intron 17 of 17) -10498 ENSMUSG00000079564.3 ENSMUSG00000079564 ENSMUST00000215070 Gm11149 antisense Interval_31882 chr11 103571850 103572180 + 0 NA intron (ENSMUSG00000034239.14, intron 7 of 13) protein_coding-intron (ENSMUSG00000034239.14, intron 7 of 13) 29090 ENSMUSG00000081676.1 ENSMUSG00000081676 ENSMUST00000119578 Gm11643 processed_pseudogene Interval_39713 chr12 94535704 94535890 + 0 NA Intergenic Intergenic -221778 ENSMUSG00000113414.1 ENSMUSG00000113414 ENSMUST00000220917 Gm18504 processed_pseudogene Interval_46891 chr13 73238132 73239155 + 0 NA Intergenic Intergenic 5248 ENSMUSG00000113952.1 ENSMUSG00000113952 ENSMUST00000223231 Rpl31-ps2 processed_pseudogene Interval_78081 chr18 7756246 7757214 + 0 NA Intergenic Intergenic -64004 ENSMUSG00000117542.1 ENSMUSG00000117542 ENSMUST00000234387 Gm18763 processed_pseudogene Interval_11862 chr1 186515296 186515746 + 0 NA intron (ENSMUSG00000103690.1, intron 2 of 2) lincRNA-intron (ENSMUSG00000103690.1, intron 1 of 1) 43160 ENSMUSG00000103690.1 ENSMUSG00000103690 ENSMUST00000195454 A730004F24Rik lincRNA Interval_40461 chr12 105022008 105024030 + 0 NA intron (ENSMUSG00000113995.1, intron 1 of 3) lincRNA-intron (ENSMUSG00000113995.1, intron 1 of 3) 1660 ENSMUSG00000113995.1 ENSMUSG00000113995 ENSMUST00000222271 Gm47648 lincRNA Interval_31233 chr11 99039706 99041909 + 0 NA promoter-TSS (ENSMUSG00000017493.12) protein_coding-promoter-TSS (ENSMUSG00000017493.12) -1379 ENSMUSG00000017493.12 ENSMUSG00000017493 ENSMUST00000140772 Igfbp4 protein_coding Interval_139428 chr6 100099229 100099732 + 0 NA Intergenic Intergenic 44334 ENSMUSG00000107558.1 ENSMUSG00000107558 ENSMUST00000204605 2010109P13Rik TEC Interval_129275 chr5 118600624 118601030 + 0 NA intron (ENSMUSG00000018076.12, intron 2 of 4) protein_coding-intron (ENSMUSG00000018076.12, intron 2 of 30) -1889 ENSMUSG00000107286.1 ENSMUSG00000107286 ENSMUST00000201539 Gm43788 TEC Interval_43385 chr13 29946239 29946600 + 0 NA intron (ENSMUSG00000016477.18, intron 1 of 6) protein_coding-intron (ENSMUSG00000016477.18, intron 1 of 6) 6136 ENSMUSG00000086893.1 ENSMUSG00000086893 ENSMUST00000144277 Gm11365 antisense Interval_37844 chr12 72453761 72454249 + 0 NA intron (ENSMUSG00000021090.16, intron 6 of 32) protein_coding-intron (ENSMUSG00000021090.16, intron 6 of 6) 11970 ENSMUSG00000021090.16 ENSMUSG00000021090 ENSMUST00000221282 Lrrc9 protein_coding Interval_116459 chr4 112978572 112980012 + 0 NA exon (ENSMUSG00000082678.1, exon 1 of 1) processed_pseudogene-exon (ENSMUSG00000082678.1, exon 1 of 1) 521 ENSMUSG00000082678.1 ENSMUSG00000082678 ENSMUST00000117562 Gm12818 processed_pseudogene Interval_76997 chr17 85472685 85473397 + 0 NA Intergenic Intergenic -25592 ENSMUSG00000097803.1 ENSMUSG00000097803 ENSMUST00000181130 Rpl31-ps16 processed_pseudogene Interval_28114 chr11 72950663 72951508 + 0 NA Intergenic Intergenic -2022 ENSMUSG00000105756.1 ENSMUSG00000105756 ENSMUST00000198722 Gm44467 miRNA Interval_106915 chr3 101839287 101839768 + 0 NA intron (ENSMUSG00000044313.13, intron 1 of 6) protein_coding-intron (ENSMUSG00000044313.13, intron 1 of 6) 9432 ENSMUSG00000044313.13 ENSMUSG00000044313 ENSMUST00000118411 Mab21l3 protein_coding Interval_100594 chr2 170334064 170334478 + 0 NA Intergenic Intergenic 15469 ENSMUSG00000013523.13 ENSMUSG00000013523 ENSMUST00000145920 Bcas1 protein_coding Interval_131250 chr5 135993984 135995620 + 0 NA promoter-TSS (ENSMUSG00000004947.15) protein_coding-promoter-TSS (ENSMUSG00000004947.15) -45 ENSMUSG00000004947.15 ENSMUSG00000004947 ENSMUST00000142041 Dtx2 protein_coding Interval_112775 chr4 44916052 44916271 + 0 NA intron (ENSMUSG00000035649.17, intron 6 of 8) protein_coding-intron (ENSMUSG00000035649.17, intron 2 of 4) -27592 ENSMUSG00000084854.1 ENSMUSG00000084854 ENSMUST00000154177 Gm12678 lincRNA Interval_155530 chr8 34131589 34131859 + 0 NA Intergenic Intergenic -11516 ENSMUSG00000109869.1 ENSMUSG00000109869 ENSMUST00000210178 Gm39158 antisense Interval_93150 chr2 70640843 70641488 + 0 NA Intergenic Intergenic 20944 ENSMUSG00000097025.2 ENSMUSG00000097025 ENSMUST00000180559 Gm26558 antisense Interval_172747 chrX 48256164 48257644 + 0 NA promoter-TSS (ENSMUSG00000063785.12) protein_coding-promoter-TSS (ENSMUSG00000063785.12) -14 ENSMUSG00000063785.12 ENSMUSG00000063785 ENSMUST00000152624 Utp14a protein_coding Interval_132102 chr5 142773782 142774040 + 0 NA exon (ENSMUSG00000039477.16, exon 9 of 16) protein_coding-exon (ENSMUSG00000039477.16, exon 9 of 16) -7889 ENSMUSG00000039477.16 ENSMUSG00000039477 ENSMUST00000198181 Tnrc18 protein_coding Interval_150838 chr7 115450261 115450639 + 0 NA Intergenic Intergenic 278177 ENSMUSG00000099211.1 ENSMUSG00000099211 ENSMUST00000183778 Gm27684 miRNA Interval_103567 chr3 49803091 49803710 + 0 NA Intergenic Intergenic -22513 ENSMUSG00000102943.1 ENSMUSG00000102943 ENSMUST00000193230 Gm37550 processed_pseudogene Interval_157034 chr8 64692435 64693443 + 0 NA exon (ENSMUSG00000037852.8, exon 1 of 9) protein_coding-exon (ENSMUSG00000037852.8, exon 1 of 9) 18137 ENSMUSG00000110368.1 ENSMUSG00000110368 ENSMUST00000210776 Gm45518 lincRNA Interval_168681 chr9 85783269 85784624 + 0 NA Intergenic Intergenic -1319 ENSMUSG00000099980.1 ENSMUSG00000099980 ENSMUST00000071172 Gm5619 processed_pseudogene Interval_110795 chr4 8467041 8467359 + 0 NA Intergenic Intergenic -10702 ENSMUSG00000082151.3 ENSMUSG00000082151 ENSMUST00000118311 Gm11810 processed_pseudogene Interval_38454 chr12 79144495 79144893 + 0 NA intron (ENSMUSG00000021125.6, intron 2 of 7) protein_coding-intron (ENSMUSG00000021125.6, intron 2 of 7) 7238 ENSMUSG00000111929.1 ENSMUSG00000111929 ENSMUST00000218917 Gm48780 antisense Interval_55772 chr14 99892372 99892657 + 0 NA intron (ENSMUSG00000072294.5, intron 1 of 1) protein_coding-intron (ENSMUSG00000072294.5, intron 6 of 6) 7877 ENSMUSG00000072294.5 ENSMUSG00000072294 ENSMUST00000226544 Klf12 protein_coding Interval_109691 chr3 146016432 146017747 + 0 NA intron (ENSMUSG00000036863.12, intron 6 of 6) protein_coding-intron (ENSMUSG00000036863.12, intron 6 of 6) -21356 ENSMUSG00000105146.1 ENSMUSG00000105146 ENSMUST00000196412 Gm35409 lincRNA Interval_108261 chr3 123111390 123111853 + 0 NA exon (ENSMUSG00000050315.14, exon 2 of 2) protein_coding-exon (ENSMUSG00000050315.14, exon 2 of 2) -30667 ENSMUSG00000106012.1 ENSMUSG00000106012 ENSMUST00000196387 Gm43744 processed_pseudogene Interval_9243 chr1 155423024 155423397 + 0 NA Intergenic Intergenic 103933 ENSMUSG00000073535.5 ENSMUSG00000073535 ENSMUST00000194133 Gm5532 lincRNA Interval_65717 chr16 25948269 25948481 + 0 NA Intergenic Intergenic -8100 ENSMUSG00000090257.1 ENSMUSG00000090257 ENSMUST00000161614 Gm4524 antisense Interval_148425 chr7 81176066 81176835 + 0 NA Intergenic Intergenic -14706 ENSMUSG00000083820.1 ENSMUSG00000083820 ENSMUST00000118488 Ndufs6b processed_pseudogene Interval_154755 chr8 23142422 23142720 + 0 NA promoter-TSS (ENSMUSG00000070084.3) miRNA-promoter-TSS (ENSMUSG00000070084.3) 16 ENSMUSG00000070084.3 ENSMUSG00000070084 ENSMUST00000093576 Mir486 miRNA Interval_67086 chr16 42799687 42799899 + 0 NA intron (ENSMUSG00000075070.6, intron 1 of 1) lincRNA-intron (ENSMUSG00000075070.6, intron 1 of 1) 75947 ENSMUSG00000075070.6 ENSMUSG00000075070 ENSMUST00000130331 4932412D23Rik lincRNA Interval_140951 chr6 122974617 122975324 + 0 NA Intergenic Intergenic -15397 ENSMUSG00000059639.2 ENSMUSG00000059639 ENSMUST00000079379 Clec4a4 protein_coding Interval_15218 chr10 43425880 43426138 + 0 NA intron (ENSMUSG00000038240.13, intron 7 of 7) protein_coding-intron (ENSMUSG00000038240.13, intron 7 of 7) 13478 ENSMUSG00000110772.1 ENSMUSG00000110772 ENSMUST00000216518 Gm47856 TEC Interval_6198 chr1 101386008 101386309 + 0 NA exon (ENSMUSG00000100222.1, exon 1 of 1) processed_pseudogene-exon (ENSMUSG00000100222.1, exon 1 of 1) 272 ENSMUSG00000100222.1 ENSMUSG00000100222 ENSMUST00000187074 Psmb6-ps2 processed_pseudogene Interval_146256 chr7 45006236 45006686 + 0 NA exon (ENSMUSG00000038406.17, exon 7 of 11) protein_coding-exon (ENSMUSG00000038406.17, exon 7 of 11) 6026 ENSMUSG00000098839.1 ENSMUSG00000098839 ENSMUST00000183606 Mir7054 miRNA Interval_85379 chr19 25341114 25341455 + 0 NA intron (ENSMUSG00000032702.16, intron 3 of 13) protein_coding-intron (ENSMUSG00000032702.16, intron 3 of 13) 5919 ENSMUSG00000118238.1 ENSMUSG00000118238 ENSMUST00000235913 Gm34432 processed_pseudogene Interval_134577 chr6 29710098 29710620 + 0 NA intron (ENSMUSG00000001763.14, intron 2 of 7) protein_coding-intron (ENSMUSG00000001763.14, intron 2 of 7) 2331 ENSMUSG00000001763.14 ENSMUSG00000001763 ENSMUST00000137925 Tspan33 protein_coding Interval_93855 chr2 77518490 77519902 + 0 NA intron (ENSMUSG00000027016.17, intron 3 of 9) protein_coding-intron (ENSMUSG00000027016.17, intron 1 of 7) 56527 ENSMUSG00000085845.7 ENSMUSG00000085845 ENSMUST00000126572 Gm13944 antisense Interval_48533 chr13 99900091 99901119 + 0 NA promoter-TSS (ENSMUSG00000021647.7) protein_coding-promoter-TSS (ENSMUSG00000021647.7) 486 ENSMUSG00000021647.7 ENSMUSG00000021647 ENSMUST00000224142 Cartpt protein_coding Interval_131579 chr5 138263328 138264314 + 0 NA promoter-TSS (ENSMUSG00000085227.1) antisense-promoter-TSS (ENSMUSG00000085227.1) -287 ENSMUSG00000085227.1 ENSMUSG00000085227 ENSMUST00000138911 6330418K02Rik antisense Interval_84156 chr19 7606025 7608151 + 0 NA promoter-TSS (ENSMUSG00000024972.16) protein_coding-promoter-TSS (ENSMUSG00000024972.16) 105 ENSMUSG00000024972.16 ENSMUSG00000024972 ENSMUST00000079902 Lgals12 protein_coding Interval_109769 chr3 146784371 146784665 + 0 NA intron (ENSMUSG00000005034.15, intron 1 of 9) protein_coding-intron (ENSMUSG00000005034.15, intron 1 of 9) -18645 ENSMUSG00000104946.1 ENSMUSG00000104946 ENSMUST00000198392 Gm19104 processed_pseudogene Interval_82060 chr18 67423812 67424791 + 0 NA intron (ENSMUSG00000024527.10, intron 4 of 9) protein_coding-intron (ENSMUSG00000024527.10, intron 9 of 16) 11647 ENSMUSG00000024527.10 ENSMUSG00000024527 ENSMUST00000236810 Afg3l2 protein_coding Interval_1637 chr1 30583297 30583558 + 0 NA Intergenic Intergenic 136535 ENSMUSG00000053185.2 ENSMUSG00000053185 ENSMUST00000065469 Gm9898 lincRNA Interval_146007 chr7 43089280 43089622 + 0 NA intron (ENSMUSG00000107181.1, intron 1 of 3) lincRNA-intron (ENSMUSG00000107181.1, intron 1 of 3) -6793 ENSMUSG00000108492.1 ENSMUSG00000108492 ENSMUST00000206176 Rpl18a-ps4 processed_pseudogene Interval_24042 chr11 29723729 29724792 + 0 NA intron (ENSMUSG00000020458.16, intron 1 of 6) protein_coding-intron (ENSMUSG00000020458.16, intron 1 of 6) 31312 ENSMUSG00000020458.16 ENSMUSG00000020458 ENSMUST00000126162 Rtn4 protein_coding Interval_119297 chr4 136719991 136720714 + 0 NA intron (ENSMUSG00000028664.14, intron 3 of 15) protein_coding-intron (ENSMUSG00000028664.14, intron 3 of 15) -26312 ENSMUSG00000028664.14 ENSMUSG00000028664 ENSMUST00000144573 Ephb2 protein_coding Interval_154212 chr8 13474469 13474908 + 0 NA exon (ENSMUSG00000031451.6, exon 10 of 15) protein_coding-exon (ENSMUSG00000031451.6, exon 10 of 15) 19802 ENSMUSG00000031451.6 ENSMUSG00000031451 ENSMUST00000033828 Gas6 protein_coding Interval_122825 chr5 25821973 25822282 + 0 NA intron (ENSMUSG00000056367.14, intron 3 of 10) protein_coding-intron (ENSMUSG00000056367.14, intron 4 of 11) 62088 ENSMUSG00000056367.14 ENSMUSG00000056367 ENSMUST00000198693 Actr3b protein_coding Interval_156427 chr8 48069088 48069780 + 0 NA TTS (ENSMUSG00000110544.1) processed_pseudogene-TTS (ENSMUSG00000110544.1) 1194 ENSMUSG00000110544.1 ENSMUSG00000110544 ENSMUST00000212389 Gm2607 processed_pseudogene Interval_136771 chr6 59466913 59467650 + 0 NA Intergenic Intergenic -40987 ENSMUSG00000045441.5 ENSMUSG00000045441 ENSMUST00000051065 Gprin3 protein_coding Interval_85558 chr19 28545150 28545799 + 0 NA intron (ENSMUSG00000052942.13, intron 2 of 10) protein_coding-intron (ENSMUSG00000052942.13, intron 2 of 9) 37820 ENSMUSG00000089952.1 ENSMUSG00000089952 ENSMUST00000162380 4933413C19Rik sense_intronic Interval_64303 chr16 10357521 10358524 + 0 NA TTS (ENSMUSG00000039179.13) protein_coding-TTS (ENSMUSG00000039179.13) -26737 ENSMUSG00000116270.1 ENSMUSG00000116270 ENSMUST00000229862 Gm1600 lincRNA Interval_160501 chr8 110071385 110071855 + 0 NA Intergenic Intergenic -8126 ENSMUSG00000044676.10 ENSMUSG00000044676 ENSMUST00000058804 Zfp612 protein_coding Interval_163740 chr9 25122504 25122702 + 0 NA intron (ENSMUSG00000008429.8, intron 4 of 7) protein_coding-intron (ENSMUSG00000008429.8, intron 4 of 7) -21122 ENSMUSG00000066809.1 ENSMUSG00000066809 ENSMUST00000086236 Gm10180 processed_pseudogene Interval_20732 chr10 120604356 120605018 + 0 NA promoter-TSS (ENSMUSG00000088924.1) snoRNA-promoter-TSS (ENSMUSG00000088924.1) -850 ENSMUSG00000088924.1 ENSMUSG00000088924 ENSMUST00000158299 Gm24298 snoRNA Interval_152526 chr7 133856174 133857016 + 0 NA intron (ENSMUSG00000053111.13, intron 2 of 2) protein_coding-intron (ENSMUSG00000053111.13, intron 2 of 10) 67110 ENSMUSG00000053111.13 ENSMUSG00000053111 ENSMUST00000211077 Fank1 protein_coding Interval_56135 chr14 106551999 106552424 + 0 NA Intergenic Intergenic 4032 ENSMUSG00000115695.1 ENSMUSG00000115695 ENSMUST00000227281 Gm48973 processed_pseudogene Interval_54943 chr14 76393630 76394140 + 0 NA Intergenic Intergenic -24943 ENSMUSG00000022010.19 ENSMUSG00000022010 ENSMUST00000133224 Tsc22d1 protein_coding Interval_32944 chr11 113291034 113293005 + 0 NA intron (ENSMUSG00000041654.15, intron 7 of 9) protein_coding-intron (ENSMUSG00000041654.15, intron 8 of 10) -82350 ENSMUSG00000085421.1 ENSMUSG00000085421 ENSMUST00000130373 4732490B19Rik lincRNA Interval_778 chr1 10932664 10933842 + 0 NA Intergenic Intergenic 11583 ENSMUSG00000088585.1 ENSMUSG00000088585 ENSMUST00000157960 Gm22963 snoRNA Interval_37952 chr12 73286235 73287565 + 0 NA promoter-TSS (ENSMUSG00000044712.15) protein_coding-promoter-TSS (ENSMUSG00000044712.15) 5 ENSMUSG00000044712.15 ENSMUSG00000044712 ENSMUST00000150996 Slc38a6 protein_coding Interval_63438 chr15 101092226 101094246 + 0 NA Intergenic Intergenic -14669 ENSMUSG00000095440.2 ENSMUSG00000095440 ENSMUST00000213610 Fignl2 protein_coding Interval_19866 chr10 110727570 110728396 + 0 NA Intergenic Intergenic -17482 ENSMUSG00000020185.16 ENSMUSG00000020185 ENSMUST00000174593 E2f7 protein_coding Interval_157451 chr8 70451288 70453654 + 0 NA exon (ENSMUSG00000055707.13, exon 3 of 3) protein_coding-exon (ENSMUSG00000055707.13, exon 3 of 3) -21186 ENSMUSG00000003575.13 ENSMUSG00000003575 ENSMUST00000153632 Crtc1 protein_coding Interval_57554 chr15 12311307 12312104 + 0 NA Intergenic Intergenic -9930 ENSMUSG00000022200.8 ENSMUSG00000022200 ENSMUST00000228671 Golph3 protein_coding Interval_62828 chr15 97280723 97281047 + 0 NA intron (ENSMUSG00000044250.8, intron 3 of 5) protein_coding-intron (ENSMUSG00000044250.8, intron 3 of 5) 22089 ENSMUSG00000116291.1 ENSMUSG00000116291 ENSMUST00000229443 Gm4383 processed_pseudogene Interval_119184 chr4 136062926 136063610 + 0 NA Intergenic Intergenic -10178 ENSMUSG00000059291.15 ENSMUSG00000059291 ENSMUST00000128733 Rpl11 protein_coding Interval_171263 chr9 115779926 115780330 + 0 NA Intergenic Intergenic 99385 ENSMUSG00000110905.1 ENSMUSG00000110905 ENSMUST00000215982 Gm48007 lincRNA Interval_123061 chr5 29336006 29336819 + 0 NA TTS (ENSMUSG00000093302.1) miRNA-TTS (ENSMUSG00000093302.1) 434 ENSMUSG00000093302.1 ENSMUSG00000093302 ENSMUST00000175561 Gm23801 miRNA Interval_80617 chr18 44636903 44637289 + 0 NA intron (ENSMUSG00000071856.10, intron 3 of 18) protein_coding-intron (ENSMUSG00000071856.10, intron 3 of 18) -25007 ENSMUSG00000097610.2 ENSMUSG00000097610 ENSMUST00000202771 A930012L18Rik antisense Interval_65514 chr16 22990053 22990724 + 0 NA intron (ENSMUSG00000060459.14, intron 2 of 3) protein_coding-intron (ENSMUSG00000060459.14, intron 9 of 10) 26650 ENSMUSG00000090021.2 ENSMUSG00000090021 ENSMUST00000159889 Gm6493 processed_pseudogene Interval_156668 chr8 56620291 56620665 + 0 NA Intergenic Intergenic 32558 ENSMUSG00000038206.13 ENSMUSG00000038206 ENSMUST00000211294 Fbxo8 protein_coding Interval_117854 chr4 126636451 126636762 + 0 NA Intergenic Intergenic 26752 ENSMUSG00000073755.4 ENSMUSG00000073755 ENSMUST00000164362 5730409E04Rik protein_coding Interval_38661 chr12 80892566 80894263 + 0 NA Intergenic Intergenic -18063 ENSMUSG00000065115.1 ENSMUSG00000065115 ENSMUST00000083181 Gm23298 snRNA Interval_1655 chr1 30825123 30826524 + 0 NA intron (ENSMUSG00000048874.15, intron 1 of 5) protein_coding-intron (ENSMUSG00000048874.15, intron 3 of 14) 10608 ENSMUSG00000103783.1 ENSMUSG00000103783 ENSMUST00000195437 Gm37522 TEC Interval_33912 chr11 119374341 119375546 + 0 NA intron (ENSMUSG00000039908.14, intron 7 of 11) protein_coding-intron (ENSMUSG00000039908.14, intron 12 of 16) 12294 ENSMUSG00000039908.14 ENSMUSG00000039908 ENSMUST00000151612 Slc26a11 protein_coding Interval_53749 chr14 61461043 61461976 + 0 NA Intergenic Intergenic 2242 ENSMUSG00000115618.1 ENSMUSG00000115618 ENSMUST00000228542 Gm49298 processed_pseudogene Interval_50131 chr14 8172663 8173788 + 0 NA promoter-TSS (ENSMUSG00000021748.9) protein_coding-promoter-TSS (ENSMUSG00000021748.9) -6129 ENSMUSG00000021748.9 ENSMUSG00000021748 ENSMUST00000224690 Pdhb protein_coding Interval_60842 chr15 77102379 77103218 + 0 NA intron (ENSMUSG00000033565.18, intron 7 of 9) protein_coding-intron (ENSMUSG00000033565.18, intron 7 of 12) 13004 ENSMUSG00000116298.1 ENSMUSG00000116298 ENSMUST00000230697 4833412C15Rik TEC Interval_76522 chr17 80736236 80736449 + 0 NA Intergenic Intergenic 8211 ENSMUSG00000054957.5 ENSMUSG00000054957 ENSMUST00000068277 Gm9959 pseudogene Interval_87023 chr19 45591937 45592283 + 0 NA promoter-TSS (ENSMUSG00000040913.11) protein_coding-promoter-TSS (ENSMUSG00000040913.11) -268 ENSMUSG00000040913.11 ENSMUSG00000040913 ENSMUST00000159590 Fbxw4 protein_coding Interval_24909 chr11 41132491 41132883 + 0 NA Intergenic Intergenic -9076 ENSMUSG00000084129.1 ENSMUSG00000084129 ENSMUST00000119350 Hmgb1-ps1 processed_pseudogene Interval_117556 chr4 124667740 124668484 + 0 NA Intergenic Intergenic -10943 ENSMUSG00000098760.1 ENSMUSG00000098760 ENSMUST00000184062 Gm2164 antisense Interval_81627 chr18 62514803 62515483 + 0 NA exon (ENSMUSG00000042211.7, exon 15 of 22) protein_coding-exon (ENSMUSG00000042211.7, exon 15 of 22) 5586 ENSMUSG00000042211.7 ENSMUSG00000042211 ENSMUST00000235807 Fbxo38 protein_coding Interval_32885 chr11 112810520 112811820 + 0 NA Intergenic Intergenic -12162 ENSMUSG00000075437.4 ENSMUSG00000075437 ENSMUST00000127337 Gm11681 lincRNA Interval_50138 chr14 8218419 8219334 + 0 NA intron (ENSMUSG00000021752.13, intron 1 of 2) protein_coding-intron (ENSMUSG00000021752.13, intron 1 of 2) 4374 ENSMUSG00000021752.13 ENSMUSG00000021752 ENSMUST00000170111 Kctd6 protein_coding Interval_94615 chr2 92675194 92675890 + 0 NA Intergenic Intergenic -66688 ENSMUSG00000085976.1 ENSMUSG00000085976 ENSMUST00000152230 Gm13816 lincRNA Interval_54036 chr14 64652341 64652977 + 0 NA promoter-TSS (ENSMUSG00000060012.9) protein_coding-promoter-TSS (ENSMUSG00000060012.9) 99 ENSMUSG00000060012.9 ENSMUSG00000060012 ENSMUST00000224677 Kif13b protein_coding Interval_90842 chr2 32919670 32919919 + 0 NA exon (ENSMUSG00000026796.16, exon 8 of 14) protein_coding-exon (ENSMUSG00000026796.16, exon 8 of 14) 5083 ENSMUSG00000026796.16 ENSMUSG00000026796 ENSMUST00000151607 Fam129b protein_coding Interval_6210 chr1 101835614 101835824 + 0 NA Intergenic Intergenic 45022 ENSMUSG00000100349.1 ENSMUSG00000100349 ENSMUST00000190483 Gm28188 processed_pseudogene Interval_168539 chr9 83381484 83381864 + 0 NA Intergenic Intergenic 20195 ENSMUSG00000032258.15 ENSMUSG00000032258 ENSMUST00000188907 Lca5 protein_coding Interval_38646 chr12 80777900 80778593 + 0 NA Intergenic Intergenic 12097 ENSMUSG00000112093.1 ENSMUSG00000112093 ENSMUST00000220423 Gm47941 bidirectional_promoter_lncRNA Interval_2060 chr1 36178208 36179126 + 0 NA TTS (ENSMUSG00000037470.14) protein_coding-TTS (ENSMUSG00000037470.14) -34354 ENSMUSG00000098752.1 ENSMUSG00000098752 ENSMUST00000184790 Mir6897 miRNA Interval_137643 chr6 77308738 77308921 + 0 NA intron (ENSMUSG00000063063.12, intron 8 of 18) protein_coding-intron (ENSMUSG00000063063.12, intron 7 of 17) 15976 ENSMUSG00000108057.1 ENSMUSG00000108057 ENSMUST00000204246 Gm44234 TEC Interval_32864 chr11 112519946 112520506 + 0 NA Intergenic Intergenic 191114 ENSMUSG00000041674.16 ENSMUSG00000041674 ENSMUST00000148724 BC006965 processed_transcript Interval_39184 chr12 85662777 85663342 + 0 NA TTS (ENSMUSG00000113249.1) processed_pseudogene-TTS (ENSMUSG00000113249.1) 617 ENSMUSG00000113249.1 ENSMUSG00000113249 ENSMUST00000222443 Gm33312 processed_pseudogene Interval_104913 chr3 78966442 78967447 + 0 NA promoter-TSS (ENSMUSG00000037096.6) processed_pseudogene-promoter-TSS (ENSMUSG00000037096.6) -145 ENSMUSG00000037096.6 ENSMUSG00000037096 ENSMUST00000036976 Gm9762 processed_pseudogene Interval_63624 chr15 102413462 102413667 + 0 NA intron (ENSMUSG00000001280.13, intron 3 of 5) protein_coding-intron (ENSMUSG00000001280.13, intron 3 of 5) 7421 ENSMUSG00000001280.13 ENSMUSG00000001280 ENSMUST00000168802 Sp1 protein_coding Interval_18112 chr10 82698728 82699921 + 0 NA intron (ENSMUSG00000020246.13, intron 1 of 5) protein_coding-intron (ENSMUSG00000020246.13, intron 1 of 14) 113 ENSMUSG00000020246.13 ENSMUSG00000020246 ENSMUST00000160681 Hcfc2 protein_coding Interval_43677 chr13 34900308 34900496 + 0 NA exon (ENSMUSG00000021413.9, exon 14 of 15) protein_coding-exon (ENSMUSG00000021413.9, exon 14 of 15) -1247 ENSMUSG00000021413.9 ENSMUSG00000021413 ENSMUST00000222834 Prpf4b protein_coding Interval_95341 chr2 106781333 106782247 + 0 NA intron (ENSMUSG00000016386.15, intron 4 of 4) protein_coding-intron (ENSMUSG00000016386.15, intron 3 of 6) -27545 ENSMUSG00000105886.1 ENSMUSG00000105886 ENSMUST00000200346 Gm22813 scaRNA Interval_164509 chr9 37551990 37553265 + 0 NA exon (ENSMUSG00000053310.11, exon 1 of 4) protein_coding-exon (ENSMUSG00000053310.11, exon 1 of 4) -6489 ENSMUSG00000053310.11 ENSMUSG00000053310 ENSMUST00000182070 Nrgn protein_coding Interval_43057 chr13 23516999 23519906 + 0 NA TTS (ENSMUSG00000104750.1) miRNA-TTS (ENSMUSG00000104750.1) 310 ENSMUSG00000104750.1 ENSMUSG00000104750 ENSMUST00000199903 n-TStga1 miRNA Interval_122617 chr5 24238853 24239516 + 0 NA Intergenic Intergenic -1328 ENSMUSG00000105713.1 ENSMUSG00000105713 ENSMUST00000200623 Gm43827 processed_pseudogene Interval_20149 chr10 115271246 115272159 + 0 NA Intergenic Intergenic 1724 ENSMUSG00000111964.1 ENSMUSG00000111964 ENSMUST00000217892 Gm8942 processed_pseudogene Interval_55246 chr14 79606847 79607049 + 0 NA intron (ENSMUSG00000022024.10, intron 6 of 10) protein_coding-intron (ENSMUSG00000022024.10, intron 7 of 12) 19139 ENSMUSG00000022024.10 ENSMUSG00000022024 ENSMUST00000226320 Sugt1 protein_coding Interval_169658 chr9 99846770 99847239 + 0 NA Intergenic Intergenic 11309 ENSMUSG00000110929.1 ENSMUSG00000110929 ENSMUST00000216324 Gm47757 lincRNA Interval_101110 chr2 178037357 178038503 + 0 NA Intergenic Intergenic 14551 ENSMUSG00000074519.11 ENSMUSG00000074519 ENSMUST00000108926 Zfp971 protein_coding Interval_993 chr1 13679050 13679388 + 0 NA intron (ENSMUSG00000067813.3, intron 2 of 3) protein_coding-intron (ENSMUSG00000067813.3, intron 2 of 3) 10448 ENSMUSG00000067813.3 ENSMUSG00000067813 ENSMUST00000088542 Xkr9 protein_coding Interval_142400 chr6 141543678 141543995 + 0 NA intron (ENSMUSG00000030235.17, intron 5 of 13) protein_coding-intron (ENSMUSG00000030235.17, intron 6 of 14) 19437 ENSMUSG00000030235.17 ENSMUSG00000030235 ENSMUST00000203755 Slco1c1 protein_coding Interval_22577 chr11 11892041 11893335 + 0 NA intron (ENSMUSG00000020182.16, intron 1 of 14) protein_coding-intron (ENSMUSG00000020182.16, intron 1 of 14) 5456 ENSMUSG00000020182.16 ENSMUSG00000020182 ENSMUST00000134121 Ddc protein_coding Interval_69532 chr16 94069196 94069494 + 0 NA Intergenic Intergenic 14521 ENSMUSG00000116569.1 ENSMUSG00000116569 ENSMUST00000231710 Gm49620 bidirectional_promoter_lncRNA Interval_78087 chr18 7868514 7870128 + 0 NA promoter-TSS (ENSMUSG00000024283.15) protein_coding-promoter-TSS (ENSMUSG00000024283.15) -180 ENSMUSG00000024283.15 ENSMUSG00000024283 ENSMUST00000167542 Wac protein_coding Interval_27714 chr11 69613633 69615141 + 0 NA TTS (ENSMUSG00000005202.2) protein_coding-TTS (ENSMUSG00000005202.2) 2553 ENSMUSG00000005202.2 ENSMUSG00000005202 ENSMUST00000137159 Shbg protein_coding Interval_62042 chr15 86066914 86067235 + 0 NA promoter-TSS (ENSMUSG00000035900.18) protein_coding-promoter-TSS (ENSMUSG00000035900.18) -7659 ENSMUSG00000035900.18 ENSMUSG00000035900 ENSMUST00000147286 Gramd4 protein_coding Interval_84077 chr19 7075170 7076035 + 0 NA intron (ENSMUSG00000036278.7, intron 3 of 10) protein_coding-intron (ENSMUSG00000036278.7, intron 3 of 10) 12819 ENSMUSG00000117901.1 ENSMUSG00000117901 ENSMUST00000236559 AC109619.1 antisense Interval_18683 chr10 89277576 89277829 + 0 NA intron (ENSMUSG00000035189.17, intron 3 of 6) protein_coding-intron (ENSMUSG00000035189.17, intron 3 of 10) -20112 ENSMUSG00000035189.17 ENSMUSG00000035189 ENSMUST00000180843 Ano4 protein_coding Interval_4508 chr1 74692718 74692970 + 0 NA intron (ENSMUSG00000033257.14, intron 2 of 6) protein_coding-intron (ENSMUSG00000033257.14, intron 15 of 19) 3421 ENSMUSG00000033257.14 ENSMUSG00000033257 ENSMUST00000143790 Ttll4 protein_coding Interval_94238 chr2 86171094 86171426 + 0 NA exon (ENSMUSG00000075200.2, exon 1 of 1) protein_coding-exon (ENSMUSG00000075200.2, exon 1 of 1) -3738 ENSMUSG00000075201.2 ENSMUSG00000075201 ENSMUST00000099907 Olfr1043 protein_coding Interval_90505 chr2 30850825 30851222 + 0 NA intron (ENSMUSG00000039476.13, intron 1 of 1) protein_coding-intron (ENSMUSG00000039476.13, intron 1 of 3) 5579 ENSMUSG00000039476.13 ENSMUSG00000039476 ENSMUST00000137924 Prrx2 protein_coding Interval_76577 chr17 81466939 81467196 + 0 NA intron (ENSMUSG00000054640.15, intron 2 of 11) protein_coding-intron (ENSMUSG00000054640.15, intron 1 of 9) 25304 ENSMUSG00000079333.3 ENSMUSG00000079333 ENSMUST00000168858 Gm11096 protein_coding Interval_17197 chr10 74919112 74919644 + 0 NA Intergenic Intergenic -47831 ENSMUSG00000040009.6 ENSMUSG00000040009 ENSMUST00000159991 Gnaz protein_coding Interval_38245 chr12 76608716 76609352 + 0 NA intron (ENSMUSG00000021061.15, intron 20 of 35) protein_coding-intron (ENSMUSG00000021061.15, intron 20 of 35) -24948 ENSMUSG00000021061.15 ENSMUSG00000021061 ENSMUST00000166101 Sptb protein_coding Interval_39001 chr12 84388390 84388901 + 0 NA intron (ENSMUSG00000021236.16, intron 5 of 14) protein_coding-intron (ENSMUSG00000021236.16, intron 5 of 14) 17643 ENSMUSG00000021235.13 ENSMUSG00000021235 ENSMUST00000156592 Coq6 protein_coding Interval_12644 chr10 4107643 4108551 + 0 NA intron (ENSMUSG00000040675.17, intron 26 of 27) protein_coding-intron (ENSMUSG00000040675.17, intron 26 of 27) 3784 ENSMUSG00000065792.1 ENSMUSG00000065792 ENSMUST00000083858 Gm25515 snRNA Interval_129958 chr5 123302270 123302511 + 0 NA promoter-TSS (ENSMUSG00000029442.18) protein_coding-promoter-TSS (ENSMUSG00000029442.18) 7934 ENSMUSG00000087063.1 ENSMUSG00000087063 ENSMUST00000133476 Gm15857 antisense Interval_128713 chr5 114878871 114879881 + 0 NA intron (ENSMUSG00000029564.12, intron 6 of 6) protein_coding-intron (ENSMUSG00000029564.12, intron 10 of 11) -11351 ENSMUSG00000080707.1 ENSMUSG00000080707 ENSMUST00000119930 Gm13823 processed_pseudogene Interval_167732 chr9 72356890 72357381 + 0 NA promoter-TSS (ENSMUSG00000103388.1) TEC-promoter-TSS (ENSMUSG00000103388.1) -92 ENSMUSG00000103388.1 ENSMUSG00000103388 ENSMUST00000192371 Gm37581 TEC Interval_67284 chr16 45426399 45428382 + 0 NA exon (ENSMUSG00000081303.2, exon 1 of 1) processed_pseudogene-exon (ENSMUSG00000081303.2, exon 1 of 1) 2116 ENSMUSG00000081303.2 ENSMUSG00000081303 ENSMUST00000121567 Gm16011 processed_pseudogene Interval_10808 chr1 175367344 175367674 + 0 NA intron (ENSMUSG00000026527.13, intron 2 of 17) protein_coding-intron (ENSMUSG00000026527.13, intron 1 of 15) 13167 ENSMUSG00000104343.1 ENSMUSG00000104343 ENSMUST00000194955 5730408A14Rik TEC Interval_106097 chr3 93026823 93027288 + 0 NA Intergenic Intergenic -7996 ENSMUSG00000027912.8 ENSMUSG00000027912 ENSMUST00000193944 Lce1m protein_coding Interval_127952 chr5 109795789 109797217 + 0 NA promoter-TSS (ENSMUSG00000105471.1) lincRNA-promoter-TSS (ENSMUSG00000105471.1) -205 ENSMUSG00000105471.1 ENSMUSG00000105471 ENSMUST00000196262 A430073D23Rik lincRNA Interval_63073 chr15 98968694 98969964 + 0 NA Intergenic Intergenic -14019 ENSMUSG00000097587.2 ENSMUSG00000097587 ENSMUST00000180490 4930578M01Rik processed_transcript Interval_91942 chr2 51850506 51851510 + 0 NA Intergenic Intergenic 20610 ENSMUSG00000087701.4 ENSMUSG00000087701 ENSMUST00000120318 Gm13493 processed_pseudogene Interval_151991 chr7 127992941 127994333 + 0 NA promoter-TSS (ENSMUSG00000030793.4) protein_coding-promoter-TSS (ENSMUSG00000030793.4) -110 ENSMUSG00000030793.4 ENSMUSG00000030793 ENSMUST00000205594 Pycard protein_coding Interval_146495 chr7 46396174 46397885 + 0 NA promoter-TSS (ENSMUSG00000058975.7) protein_coding-promoter-TSS (ENSMUSG00000058975.7) -619 ENSMUSG00000058975.7 ENSMUSG00000058975 ENSMUST00000160234 Kcnc1 protein_coding Interval_107165 chr3 104104230 104105544 + 0 NA intron (ENSMUSG00000052539.15, intron 2 of 20) protein_coding-intron (ENSMUSG00000052539.15, intron 2 of 21) -7007 ENSMUSG00000105148.1 ENSMUSG00000105148 ENSMUST00000199071 Gm42700 sense_intronic Interval_153298 chr7 143459186 143461650 + 0 NA promoter-TSS (ENSMUSG00000037664.13) protein_coding-promoter-TSS (ENSMUSG00000037664.13) -256 ENSMUSG00000037664.13 ENSMUSG00000037664 ENSMUST00000208137 Cdkn1c protein_coding Interval_46531 chr13 66880212 66880768 + 0 NA Intergenic Intergenic -4780 ENSMUSG00000114374.1 ENSMUSG00000114374 ENSMUST00000225178 Gm7911 processed_pseudogene Interval_93990 chr2 80531955 80532247 + 0 NA intron (ENSMUSG00000027002.13, intron 16 of 31) protein_coding-intron (ENSMUSG00000027002.13, intron 15 of 30) -6421 ENSMUSG00000027002.13 ENSMUSG00000027002 ENSMUST00000134587 Nckap1 protein_coding Interval_126063 chr5 77178106 77178877 + 0 NA Intergenic Intergenic 32714 ENSMUSG00000053030.11 ENSMUSG00000053030 ENSMUST00000121825 Spink2 protein_coding Interval_161165 chr8 117951620 117952188 + 0 NA Intergenic Intergenic 149842 ENSMUSG00000074065.4 ENSMUSG00000074065 ENSMUST00000098368 Gm10617 pseudogene Interval_26845 chr11 61017026 61017447 + 0 NA Intergenic Intergenic -48568 ENSMUSG00000042529.14 ENSMUSG00000042529 ENSMUST00000108717 Kcnj12 protein_coding Interval_172955 chrX 57674866 57675406 + 0 NA Intergenic Intergenic -4649 ENSMUSG00000084103.1 ENSMUSG00000084103 ENSMUST00000122428 Gm14629 unprocessed_pseudogene Interval_58217 chr15 30992176 30993656 + 0 NA intron (ENSMUSG00000022240.10, intron 18 of 21) protein_coding-intron (ENSMUSG00000022240.10, intron 19 of 22) -30038 ENSMUSG00000115012.1 ENSMUSG00000115012 ENSMUST00000228332 9630009A06Rik antisense Interval_98221 chr2 150099403 150100969 + 0 NA Intergenic Intergenic 11390 ENSMUSG00000083055.1 ENSMUSG00000083055 ENSMUST00000119999 Gm14140 processed_pseudogene Interval_91892 chr2 51057989 51058862 + 0 NA Intergenic Intergenic 90685 ENSMUSG00000017144.8 ENSMUSG00000017144 ENSMUST00000140864 Rnd3 protein_coding Interval_24199 chr11 31235869 31236940 + 0 NA Intergenic Intergenic -52030 ENSMUSG00000079890.2 ENSMUSG00000079890 ENSMUST00000116006 Gm12106 unprocessed_pseudogene Interval_140418 chr6 117953978 117954465 + 0 NA Intergenic Intergenic -18268 ENSMUSG00000004988.9 ENSMUSG00000004988 ENSMUST00000203842 Fxyd4 protein_coding Interval_46346 chr13 64115570 64116148 + 0 NA intron (ENSMUSG00000033114.11, intron 1 of 3) protein_coding-intron (ENSMUSG00000033114.11, intron 4 of 11) 13477 ENSMUSG00000033114.11 ENSMUSG00000033114 ENSMUST00000222168 Slc35d2 protein_coding Interval_26053 chr11 53783805 53784298 + 0 NA TTS (ENSMUSG00000081769.9) protein_coding-TTS (ENSMUSG00000081769.9) -10856 ENSMUSG00000091191.2 ENSMUSG00000091191 ENSMUST00000170390 Gm17334 TEC Interval_43887 chr13 37853930 37854686 + 0 NA intron (ENSMUSG00000039087.17, intron 1 of 9) protein_coding-intron (ENSMUSG00000039087.17, intron 1 of 9) -54518 ENSMUSG00000114370.1 ENSMUSG00000114370 ENSMUST00000224624 Gm46411 antisense Interval_1026 chr1 14186467 14187316 + 0 NA intron (ENSMUSG00000025932.14, intron 11 of 16) protein_coding-intron (ENSMUSG00000025932.14, intron 12 of 17) 4313 ENSMUSG00000095853.1 ENSMUSG00000095853 ENSMUST00000179783 Gm22616 miRNA Interval_119693 chr4 139269721 139270002 + 0 NA intron (ENSMUSG00000028745.18, intron 4 of 6) protein_coding-intron (ENSMUSG00000028745.18, intron 4 of 8) 40804 ENSMUSG00000028744.15 ENSMUSG00000028744 ENSMUST00000141007 Pqlc2 protein_coding Interval_19452 chr10 99451347 99452065 + 0 NA TTS (ENSMUSG00000112082.1) lincRNA-TTS (ENSMUSG00000112082.1) 7662 ENSMUSG00000090665.2 ENSMUSG00000090665 ENSMUST00000167243 Gad1-ps processed_pseudogene Interval_61045 chr15 78934729 78935502 + 0 NA promoter-TSS (ENSMUSG00000033099.10) protein_coding-promoter-TSS (ENSMUSG00000033099.10) -71 ENSMUSG00000033099.10 ENSMUSG00000033099 ENSMUST00000123013 Nol12 protein_coding Interval_55947 chr14 103075365 103075798 + 0 NA intron (ENSMUSG00000022125.7, intron 3 of 3) protein_coding-intron (ENSMUSG00000022125.7, intron 3 of 3) 3851 ENSMUSG00000022125.7 ENSMUSG00000022125 ENSMUST00000227117 Cln5 protein_coding Interval_174200 chrX 139463526 139463983 + 0 NA Intergenic Intergenic -16617 ENSMUSG00000042498.16 ENSMUSG00000042498 ENSMUST00000113030 Radx protein_coding Interval_168626 chr9 84429010 84429378 + 0 NA Intergenic Intergenic 5210 ENSMUSG00000099927.1 ENSMUSG00000099927 ENSMUST00000190511 Gm8226 processed_pseudogene Interval_7830 chr1 133973138 133973681 + 0 NA Intergenic Intergenic 11247 ENSMUSG00000100987.1 ENSMUSG00000100987 ENSMUST00000188504 Gm1627 lincRNA Interval_98973 chr2 156425365 156426524 + 0 NA intron (ENSMUSG00000027624.20, intron 1 of 21) protein_coding-intron (ENSMUSG00000027624.20, intron 1 of 21) -14770 ENSMUSG00000061272.8 ENSMUSG00000061272 ENSMUST00000117690 Gm14173 processed_pseudogene Interval_91016 chr2 34365187 34365367 + 0 NA intron (ENSMUSG00000038718.15, intron 1 of 5) protein_coding-intron (ENSMUSG00000038718.15, intron 2 of 8) -41595 ENSMUSG00000038696.14 ENSMUSG00000038696 ENSMUST00000129633 Mapkap1 protein_coding Interval_49989 chr13 119378251 119378938 + 0 NA intron (ENSMUSG00000116207.1, intron 7 of 16) protein_coding-intron (ENSMUSG00000025453.18, intron 7 of 14) 30358 ENSMUSG00000116207.1 ENSMUSG00000116207 ENSMUST00000223268 Nnt protein_coding Interval_113422 chr4 54854272 54854677 + 0 NA exon (ENSMUSG00000082111.1, exon 1 of 1) processed_pseudogene-exon (ENSMUSG00000082111.1, exon 1 of 1) 1346 ENSMUSG00000082111.1 ENSMUSG00000082111 ENSMUST00000120731 Gm12479 processed_pseudogene Interval_13982 chr10 25257172 25259204 + 0 NA intron (ENSMUSG00000039166.16, intron 5 of 7) protein_coding-intron (ENSMUSG00000039166.16, intron 5 of 7) 6688 ENSMUSG00000112371.1 ENSMUSG00000112371 ENSMUST00000219066 Gm7791 processed_pseudogene Interval_68529 chr16 78417468 78418428 + 0 NA Intergenic Intergenic 5911 ENSMUSG00000064862.1 ENSMUSG00000064862 ENSMUST00000082928 Gm25038 snoRNA Interval_37114 chr12 58557499 58558245 + 0 NA Intergenic Intergenic -206034 ENSMUSG00000112487.1 ENSMUSG00000112487 ENSMUST00000219517 Gm18873 processed_pseudogene Interval_38003 chr12 73779388 73779808 + 0 NA Intergenic Intergenic -13885 ENSMUSG00000113321.1 ENSMUSG00000113321 ENSMUST00000222997 Gm8075 lincRNA Interval_58541 chr15 35928744 35929002 + 0 NA intron (ENSMUSG00000014313.15, intron 2 of 2) protein_coding-intron (ENSMUSG00000037646.10, intron 61 of 61) 8296 ENSMUSG00000014313.15 ENSMUSG00000014313 ENSMUST00000227231 Cox6c protein_coding Interval_124671 chr5 53102854 53103755 + 0 NA Intergenic Intergenic -39856 ENSMUSG00000077316.1 ENSMUSG00000077316 ENSMUST00000104128 n-R5s171 rRNA Interval_40399 chr12 104637003 104637629 + 0 NA Intergenic Intergenic 84736 ENSMUSG00000041415.10 ENSMUSG00000041415 ENSMUST00000222002 Dicer1 protein_coding Interval_108115 chr3 121590911 121591380 + 0 NA Intergenic Intergenic 52222 ENSMUSG00000044522.8 ENSMUSG00000044522 ENSMUST00000198402 A730020M07Rik lincRNA Interval_97500 chr2 137939150 137939450 + 0 NA Intergenic Intergenic -62469 ENSMUSG00000086214.1 ENSMUSG00000086214 ENSMUST00000134795 Gm14062 lincRNA Interval_132903 chr5 148649120 148649730 + 0 NA Intergenic Intergenic -35781 ENSMUSG00000107098.1 ENSMUSG00000107098 ENSMUST00000202418 Gm29815 processed_pseudogene Interval_80245 chr18 38504642 38505343 + 0 NA Intergenic Intergenic -23689 ENSMUSG00000118112.1 ENSMUSG00000118112 ENSMUST00000236084 Gm50349 processed_pseudogene Interval_141115 chr6 125073521 125073766 + 0 NA intron (ENSMUSG00000067714.13, intron 1 of 1) protein_coding-intron (ENSMUSG00000067714.13, intron 1 of 1) 2366 ENSMUSG00000067714.13 ENSMUSG00000067714 ENSMUST00000171989 Lpar5 protein_coding Interval_96117 chr2 119878543 119878905 + 0 NA promoter-TSS (ENSMUSG00000081056.1) processed_pseudogene-promoter-TSS (ENSMUSG00000081056.1) -321 ENSMUSG00000081056.1 ENSMUSG00000081056 ENSMUST00000120952 Gm13998 processed_pseudogene Interval_109694 chr3 146035484 146035775 + 0 NA Intergenic Intergenic -2816 ENSMUSG00000105146.1 ENSMUSG00000105146 ENSMUST00000196412 Gm35409 lincRNA Interval_131979 chr5 141738851 141739148 + 0 NA intron (ENSMUSG00000039683.16, intron 4 of 9) protein_coding-intron (ENSMUSG00000039683.16, intron 4 of 44) -122997 ENSMUSG00000085540.1 ENSMUSG00000085540 ENSMUST00000150385 Gm16036 antisense Interval_83075 chr18 81082653 81083866 + 0 NA exon (ENSMUSG00000118262.1, exon 1 of 3) lincRNA-exon (ENSMUSG00000118262.1, exon 1 of 3) 195 ENSMUSG00000118262.1 ENSMUSG00000118262 ENSMUST00000237649 Gm50423 lincRNA Interval_134586 chr6 29767725 29769421 + 0 NA promoter-TSS (ENSMUSG00000029772.17) protein_coding-promoter-TSS (ENSMUSG00000029772.17) 17812 ENSMUSG00000081564.1 ENSMUSG00000081564 ENSMUST00000119868 Gm13717 processed_pseudogene Interval_157956 chr8 77272026 77272918 + 0 NA intron (ENSMUSG00000037148.8, intron 19 of 21) protein_coding-intron (ENSMUSG00000037148.8, intron 20 of 22) -10389 ENSMUSG00000110258.1 ENSMUSG00000110258 ENSMUST00000210161 Gm45406 antisense Interval_106443 chr3 96389651 96391246 + 0 NA Intergenic Intergenic 11566 ENSMUSG00000097539.1 ENSMUSG00000097539 ENSMUST00000181412 4930477E14Rik lincRNA Interval_31701 chr11 102335096 102335305 + 0 NA Intergenic Intergenic -16104 ENSMUSG00000020923.17 ENSMUSG00000020923 ENSMUST00000128016 Ubtf protein_coding Interval_92368 chr2 59301516 59302763 + 0 NA intron (ENSMUSG00000026991.20, intron 3 of 4) protein_coding-intron (ENSMUSG00000026991.20, intron 4 of 21) 85332 ENSMUSG00000087455.7 ENSMUSG00000087455 ENSMUST00000155111 5330411J11Rik processed_transcript Interval_151405 chr7 122116176 122117224 + 0 NA intron (ENSMUSG00000044702.13, intron 7 of 10) protein_coding-intron (ENSMUSG00000044702.13, intron 5 of 9) -14392 ENSMUSG00000089631.2 ENSMUSG00000089631 ENSMUST00000162843 Gm16326 processed_pseudogene Interval_56398 chr14 118473414 118475386 + 0 NA Intergenic Intergenic -89672 ENSMUSG00000115075.1 ENSMUSG00000115075 ENSMUST00000227627 Gm49033 processed_pseudogene Interval_51305 chr14 25868754 25870188 + 0 NA intron (ENSMUSG00000021866.15, intron 2 of 13) protein_coding-intron (ENSMUSG00000021866.15, intron 2 of 14) 795 ENSMUSG00000098609.1 ENSMUSG00000098609 ENSMUST00000184083 Anxa11os antisense Interval_117051 chr4 119232245 119233823 + 0 NA promoter-TSS (ENSMUSG00000028641.16) protein_coding-promoter-TSS (ENSMUSG00000028641.16) 88 ENSMUSG00000028641.16 ENSMUSG00000028641 ENSMUST00000127087 P3h1 protein_coding Interval_130560 chr5 128813250 128813744 + 0 NA intron (ENSMUSG00000029420.14, intron 2 of 18) protein_coding-intron (ENSMUSG00000029420.14, intron 5 of 21) -37947 ENSMUSG00000106522.1 ENSMUSG00000106522 ENSMUST00000199333 Gm42871 sense_intronic Interval_13577 chr10 19900288 19901057 + 0 NA intron (ENSMUSG00000020003.16, intron 3 of 9) protein_coding-intron (ENSMUSG00000020003.16, intron 3 of 9) 6979 ENSMUSG00000020003.16 ENSMUSG00000020003 ENSMUST00000214951 Pex7 protein_coding Interval_147260 chr7 65227815 65228030 + 0 NA Intergenic Intergenic -14553 ENSMUSG00000108587.1 ENSMUSG00000108587 ENSMUST00000205499 1810049I09Rik lincRNA Interval_169672 chr9 100117082 100117412 + 0 NA Intergenic Intergenic 56899 ENSMUSG00000103407.1 ENSMUSG00000103407 ENSMUST00000192569 4930540E01Rik TEC Interval_28487 chr11 76298854 76299783 + 0 NA intron (ENSMUSG00000020844.6, intron 1 of 7) protein_coding-intron (ENSMUSG00000020844.6, intron 1 of 7) 50106 ENSMUSG00000038046.4 ENSMUSG00000038046 ENSMUST00000155526 Mrm3 protein_coding Interval_18869 chr10 91542195 91543098 + 0 NA Intergenic Intergenic -94266 ENSMUSG00000111051.1 ENSMUSG00000111051 ENSMUST00000213414 Gm47084 processed_pseudogene Interval_26618 chr11 59263736 59265948 + 0 NA intron (ENSMUSG00000009900.7, intron 2 of 3) protein_coding-intron (ENSMUSG00000009900.7, intron 2 of 3) 25910 ENSMUSG00000009900.7 ENSMUSG00000009900 ENSMUST00000010044 Wnt3a protein_coding Interval_33482 chr11 116810990 116811899 + 0 NA intron (ENSMUSG00000020814.13, intron 3 of 4) protein_coding-intron (ENSMUSG00000020814.13, intron 3 of 3) 16559 ENSMUSG00000020814.13 ENSMUSG00000020814 ENSMUST00000150015 Mxra7 protein_coding Interval_168073 chr9 75888893 75889211 + 0 NA intron (ENSMUSG00000032179.7, intron 5 of 6) protein_coding-intron (ENSMUSG00000032179.7, intron 5 of 6) 12792 ENSMUSG00000110817.1 ENSMUSG00000110817 ENSMUST00000215680 Gm47723 TEC Interval_114384 chr4 74529218 74529465 + 0 NA Intergenic Intergenic -105873 ENSMUSG00000099334.1 ENSMUSG00000099334 ENSMUST00000178125 Gm26379 snoRNA Interval_46924 chr13 73456893 73458959 + 0 NA Intergenic Intergenic -13825 ENSMUSG00000021608.15 ENSMUSG00000021608 ENSMUST00000222881 Lpcat1 protein_coding Interval_30283 chr11 92861106 92861374 + 0 NA Intergenic Intergenic -49057 ENSMUSG00000087810.1 ENSMUSG00000087810 ENSMUST00000157185 Gm25113 snoRNA Interval_123972 chr5 36938467 36939954 + 0 NA promoter-TSS (ENSMUSG00000029120.10) protein_coding-promoter-TSS (ENSMUSG00000029120.10) 29096 ENSMUSG00000106934.1 ENSMUSG00000106934 ENSMUST00000202009 Gm42506 TEC Interval_35448 chr12 21889644 21890962 + 0 NA Intergenic Intergenic -113596 ENSMUSG00000091105.1 ENSMUSG00000091105 ENSMUST00000164169 Mrto4-ps2 processed_pseudogene Interval_11888 chr1 186757869 186758154 + 0 NA Intergenic Intergenic 8615 ENSMUSG00000097784.1 ENSMUSG00000097784 ENSMUST00000180869 A430105J06Rik lincRNA Interval_55863 chr14 101639946 101641121 + 0 NA promoter-TSS (ENSMUSG00000075486.10) protein_coding-promoter-TSS (ENSMUSG00000075486.10) -85 ENSMUSG00000075486.10 ENSMUSG00000075486 ENSMUST00000131022 Commd6 protein_coding Interval_104174 chr3 59638597 59638997 + 0 NA Intergenic Intergenic -3064 ENSMUSG00000095128.2 ENSMUSG00000095128 ENSMUST00000177879 Gm5709 unprocessed_pseudogene Interval_33018 chr11 113700558 113701140 + 0 NA intron (ENSMUSG00000018727.19, intron 5 of 6) protein_coding-intron (ENSMUSG00000018727.19, intron 5 of 6) 8671 ENSMUSG00000018727.19 ENSMUSG00000018727 ENSMUST00000151396 Cpsf4l protein_coding Interval_11931 chr1 187268274 187268473 + 0 NA intron (ENSMUSG00000039210.16, intron 6 of 6) protein_coding-intron (ENSMUSG00000039210.16, intron 5 of 9) 31916 ENSMUSG00000104394.2 ENSMUSG00000104394 ENSMUST00000193542 Gm37254 TEC Interval_109811 chr3 147856417 147856679 + 0 NA Intergenic Intergenic -220901 ENSMUSG00000103349.1 ENSMUSG00000103349 ENSMUST00000195819 Gm36888 lincRNA Interval_44732 chr13 47998095 47998624 + 0 NA intron (ENSMUSG00000047324.5, intron 2 of 7) lincRNA-intron (ENSMUSG00000047324.5, intron 2 of 7) 20249 ENSMUSG00000047324.5 ENSMUSG00000047324 ENSMUST00000061899 4931429P17Rik lincRNA Interval_153628 chr8 4105404 4105636 + 0 NA promoter-TSS (ENSMUSG00000051906.15) protein_coding-promoter-TSS (ENSMUSG00000051906.15) 208 ENSMUSG00000051906.15 ENSMUSG00000051906 ENSMUST00000128568 Cd209f protein_coding Interval_20582 chr10 119197718 119198958 + 0 NA TTS (ENSMUSG00000020114.12) protein_coding-TTS (ENSMUSG00000020114.12) 14271 ENSMUSG00000020114.12 ENSMUSG00000020114 ENSMUST00000126373 Cand1 protein_coding Interval_91619 chr2 44828525 44830481 + 0 NA intron (ENSMUSG00000036890.13, intron 2 of 3) protein_coding-intron (ENSMUSG00000036890.13, intron 2 of 4) 32772 ENSMUSG00000036890.13 ENSMUSG00000036890 ENSMUST00000133442 Gtdc1 protein_coding Interval_151279 chr7 120634441 120636041 + 0 NA promoter-TSS (ENSMUSG00000030884.12) protein_coding-promoter-TSS (ENSMUSG00000030884.12) -22 ENSMUSG00000030884.12 ENSMUSG00000030884 ENSMUST00000131191 Uqcrc2 protein_coding Interval_51456 chr14 27683582 27684838 + 0 NA intron (ENSMUSG00000040640.11, intron 1 of 15) protein_coding-intron (ENSMUSG00000040640.11, intron 2 of 15) -30167 ENSMUSG00000114653.1 ENSMUSG00000114653 ENSMUST00000224481 Gm18398 processed_pseudogene Interval_169802 chr9 101628568 101628854 + 0 NA Intergenic Intergenic 128994 ENSMUSG00000111696.1 ENSMUSG00000111696 ENSMUST00000215480 Gm47932 processed_pseudogene Interval_118959 chr4 134719113 134719381 + 0 NA Intergenic Intergenic -15480 ENSMUSG00000037306.13 ENSMUSG00000037306 ENSMUST00000176606 Man1c1 protein_coding Interval_165805 chr9 53313343 53314055 + 0 NA intron (ENSMUSG00000034584.3, intron 1 of 5) protein_coding-intron (ENSMUSG00000034584.3, intron 1 of 5) -27490 ENSMUSG00000034584.3 ENSMUSG00000034584 ENSMUST00000139096 Exph5 protein_coding Interval_143376 chr7 6222045 6222387 + 0 NA promoter-TSS (ENSMUSG00000058028.14) protein_coding-promoter-TSS (ENSMUSG00000058028.14) -7963 ENSMUSG00000058028.14 ENSMUSG00000058028 ENSMUST00000165445 Zscan5b protein_coding Interval_158594 chr8 84670754 84671265 + 0 NA exon (ENSMUSG00000001910.5, exon 6 of 6) protein_coding-exon (ENSMUSG00000001910.5, exon 6 of 6) 5564 ENSMUSG00000118487.1 ENSMUSG00000118487 ENSMUST00000238703 Gm50464 unitary_pseudogene Interval_49198 chr13 109348519 109349234 + 0 NA intron (ENSMUSG00000021699.17, intron 1 of 14) protein_coding-intron (ENSMUSG00000021699.17, intron 1 of 14) 24132 ENSMUSG00000076946.2 ENSMUSG00000076946 ENSMUST00000103758 Mir582 miRNA Interval_34241 chr11 121544915 121545139 + 0 NA intron (ENSMUSG00000039230.14, intron 1 of 10) protein_coding-intron (ENSMUSG00000039230.14, intron 14 of 38) -25694 ENSMUSG00000039238.6 ENSMUSG00000039238 ENSMUST00000092298 Zfp750 protein_coding Interval_67801 chr16 57279018 57281229 + 0 NA promoter-TSS (ENSMUSG00000097896.1) antisense-promoter-TSS (ENSMUSG00000097896.1) -767 ENSMUSG00000097896.1 ENSMUSG00000097896 ENSMUST00000180871 Gm26800 antisense Interval_5583 chr1 89961682 89963096 + 0 NA intron (ENSMUSG00000067081.13, intron 2 of 3) protein_coding-intron (ENSMUSG00000067081.13, intron 4 of 5) 32128 ENSMUSG00000092627.2 ENSMUSG00000092627 ENSMUST00000189763 D130058E05Rik processed_transcript Interval_87136 chr19 46383449 46383889 + 0 NA TTS (ENSMUSG00000025228.5) protein_coding-TTS (ENSMUSG00000025228.5) 12056 ENSMUSG00000025228.5 ENSMUSG00000025228 ENSMUST00000237952 Actr1a protein_coding Interval_108769 chr3 131161727 131162696 + 0 NA intron (ENSMUSG00000027985.14, intron 3 of 8) protein_coding-intron (ENSMUSG00000027985.14, intron 3 of 11) 25426 ENSMUSG00000104612.1 ENSMUSG00000104612 ENSMUST00000200349 Gm42449 TEC Interval_155141 chr8 26999724 27000020 + 0 NA TTS (ENSMUSG00000109621.1) lincRNA-TTS (ENSMUSG00000109621.1) 3622 ENSMUSG00000109621.1 ENSMUSG00000109621 ENSMUST00000211274 Gm45370 lincRNA Interval_110570 chr4 3980100 3980304 + 0 NA Intergenic Intergenic -1452 ENSMUSG00000082991.1 ENSMUSG00000082991 ENSMUST00000122317 Rps10-ps3 processed_pseudogene Interval_89258 chr2 18555819 18556967 + 0 NA Intergenic Intergenic -11733 ENSMUSG00000081181.1 ENSMUSG00000081181 ENSMUST00000120891 Gm13353 processed_pseudogene Interval_46181 chr13 62257981 62258380 + 0 NA Intergenic Intergenic -14581 ENSMUSG00000113081.1 ENSMUSG00000113081 ENSMUST00000221763 Gm3333 transcribed_processed_pseudogene Interval_14071 chr10 26516702 26517240 + 0 NA Intergenic Intergenic 23873 ENSMUSG00000112797.1 ENSMUSG00000112797 ENSMUST00000219589 Gm30034 lincRNA Interval_29182 chr11 81184586 81185900 + 0 NA intron (ENSMUSG00000020704.13, intron 1 of 9) protein_coding-intron (ENSMUSG00000020704.13, intron 1 of 9) 112840 ENSMUSG00000085130.1 ENSMUSG00000085130 ENSMUST00000150536 Gm11417 antisense Interval_92459 chr2 59841041 59842146 + 0 NA promoter-TSS (ENSMUSG00000035168.16) protein_coding-promoter-TSS (ENSMUSG00000035168.16) 21133 ENSMUSG00000026988.15 ENSMUSG00000026988 ENSMUST00000131285 Wdsub1 protein_coding Interval_61030 chr15 78863396 78864560 + 0 NA exon (ENSMUSG00000097085.2, exon 3 of 3) lincRNA-exon (ENSMUSG00000097085.2, exon 3 of 3) 4555 ENSMUSG00000097085.2 ENSMUSG00000097085 ENSMUST00000181146 Gm26634 lincRNA Interval_8186 chr1 136345195 136346625 + 0 NA promoter-TSS (ENSMUSG00000041570.14) protein_coding-promoter-TSS (ENSMUSG00000041570.14) -64160 ENSMUSG00000041570.14 ENSMUSG00000041570 ENSMUST00000194730 Camsap2 protein_coding Interval_113890 chr4 59614912 59615158 + 0 NA intron (ENSMUSG00000028383.17, intron 11 of 11) protein_coding-intron (ENSMUSG00000028383.17, intron 10 of 10) 20725 ENSMUSG00000028383.17 ENSMUSG00000028383 ENSMUST00000128792 Hsdl2 protein_coding Interval_165691 chr9 51000111 51000447 + 0 NA intron (ENSMUSG00000037112.16, intron 1 of 3) protein_coding-intron (ENSMUSG00000037112.16, intron 1 of 15) 8721 ENSMUSG00000037112.16 ENSMUSG00000037112 ENSMUST00000176327 Sik2 protein_coding Interval_88590 chr2 6421290 6421526 + 0 NA TTS (ENSMUSG00000039046.15) protein_coding-TTS (ENSMUSG00000039046.15) 486 ENSMUSG00000039046.15 ENSMUSG00000039046 ENSMUST00000150515 Usp6nl protein_coding Interval_158099 chr8 78719004 78720783 + 0 NA intron (ENSMUSG00000031684.11, intron 10 of 12) protein_coding-intron (ENSMUSG00000031684.11, intron 10 of 11) 54652 ENSMUSG00000112190.1 ENSMUSG00000112190 ENSMUST00000218647 Gm47209 unitary_pseudogene Interval_66113 chr16 31724301 31724571 + 0 NA intron (ENSMUSG00000022770.17, intron 1 of 2) protein_coding-intron (ENSMUSG00000022770.17, intron 4 of 24) 22906 ENSMUSG00000089011.1 ENSMUSG00000089011 ENSMUST00000158386 Gm24879 snoRNA Interval_37761 chr12 71805926 71806194 + 0 NA Intergenic Intergenic -25018 ENSMUSG00000034574.10 ENSMUSG00000034574 ENSMUST00000221317 Daam1 protein_coding Interval_63451 chr15 101173587 101174773 + 0 NA exon (ENSMUSG00000000532.11, exon 1 of 9) protein_coding-exon (ENSMUSG00000000532.11, exon 1 of 9) 113 ENSMUSG00000000532.11 ENSMUSG00000000532 ENSMUST00000000544 Acvr1b protein_coding Interval_68956 chr16 89678343 89678858 + 0 NA Intergenic Intergenic -44460 ENSMUSG00000116651.1 ENSMUSG00000116651 ENSMUST00000232201 Gm17844 processed_pseudogene Interval_22951 chr11 17912767 17913130 + 0 NA Intergenic Intergenic 40927 ENSMUSG00000016984.7 ENSMUSG00000016984 ENSMUST00000076661 Etaa1 protein_coding Interval_170074 chr9 104247798 104248422 + 0 NA intron (ENSMUSG00000032560.14, intron 1 of 3) protein_coding-intron (ENSMUSG00000032560.14, intron 1 of 55) -13995 ENSMUSG00000104040.1 ENSMUSG00000104040 ENSMUST00000192580 Gm37563 TEC Interval_158248 chr8 80511783 80511992 + 0 NA TTS (ENSMUSG00000086912.3) antisense-TTS (ENSMUSG00000086912.3) 2586 ENSMUSG00000086912.3 ENSMUSG00000086912 ENSMUST00000142188 4930505O20Rik antisense Interval_54722 chr14 73582151 73582942 + 0 NA intron (ENSMUSG00000022110.13, intron 6 of 10) protein_coding-intron (ENSMUSG00000022110.13, intron 6 of 11) 29914 ENSMUSG00000022110.13 ENSMUSG00000022110 ENSMUST00000159165 Sucla2 protein_coding Interval_130780 chr5 130345206 130345684 + 0 NA Intergenic Intergenic 39185 ENSMUSG00000052014.6 ENSMUSG00000052014 ENSMUST00000063656 A330070K13Rik protein_coding Interval_19359 chr10 97768049 97768588 + 0 NA intron (ENSMUSG00000074776.4, intron 3 of 4) lincRNA-intron (ENSMUSG00000074776.4, intron 3 of 4) -23434 ENSMUSG00000089097.1 ENSMUSG00000089097 ENSMUST00000158472 Gm25658 snoRNA Interval_140672 chr6 120457056 120457872 + 0 NA Intergenic Intergenic -5783 ENSMUSG00000002897.5 ENSMUSG00000002897 ENSMUST00000204078 Il17ra protein_coding Interval_36152 chr12 36597790 36598075 + 0 NA intron (ENSMUSG00000043153.6, intron 8 of 8) protein_coding-intron (ENSMUSG00000043153.6, intron 9 of 9) 58575 ENSMUSG00000114135.1 ENSMUSG00000114135 ENSMUST00000223284 Gm7252 processed_pseudogene Interval_106606 chr3 97691732 97692535 + 0 NA intron (ENSMUSG00000038170.15, intron 45 of 45) protein_coding-intron (ENSMUSG00000038170.15, intron 46 of 46) -1571 ENSMUSG00000098381.1 ENSMUSG00000098381 ENSMUST00000184178 Mir7225 miRNA Interval_82083 chr18 67635401 67636109 + 0 NA intron (ENSMUSG00000073542.3, intron 3 of 10) protein_coding-intron (ENSMUSG00000073542.3, intron 4 of 11) 3234 ENSMUSG00000073542.3 ENSMUSG00000073542 ENSMUST00000237975 Cep76 protein_coding Interval_71528 chr17 24331935 24332309 + 0 NA intron (ENSMUSG00000035435.17, intron 5 of 30) protein_coding-intron (ENSMUSG00000035435.17, intron 4 of 29) 18946 ENSMUSG00000035435.17 ENSMUSG00000035435 ENSMUST00000234232 Abca17 protein_coding Interval_67946 chr16 60320957 60321198 + 0 NA intron (ENSMUSG00000055540.15, intron 3 of 17) protein_coding-intron (ENSMUSG00000055540.15, intron 3 of 17) 48086 ENSMUSG00000096535.1 ENSMUSG00000096535 ENSMUST00000179691 Gm24755 miRNA Interval_7801 chr1 133776936 133778243 + 0 NA exon (ENSMUSG00000102509.1, exon 1 of 1) TEC-exon (ENSMUSG00000102509.1, exon 1 of 1) 832 ENSMUSG00000102509.1 ENSMUSG00000102509 ENSMUST00000193173 Gm37368 TEC Interval_174400 chrX 151228907 151229665 + 0 NA intron (ENSMUSG00000041245.13, intron 5 of 21) protein_coding-intron (ENSMUSG00000041245.13, intron 5 of 21) -13637 ENSMUSG00000083596.4 ENSMUSG00000083596 ENSMUST00000121545 Rpl21-ps15 processed_pseudogene Interval_109859 chr3 149074802 149075561 + 0 NA Intergenic Intergenic 46249 ENSMUSG00000065270.1 ENSMUSG00000065270 ENSMUST00000083336 Gm25127 snRNA Interval_84680 chr19 15032661 15034250 + 0 NA Intergenic Intergenic -72689 ENSMUSG00000063586.1 ENSMUSG00000063586 ENSMUST00000072982 Gm5513 processed_pseudogene Interval_157742 chr8 72676515 72677851 + 0 NA intron (ENSMUSG00000048148.18, intron 9 of 18) protein_coding-intron (ENSMUSG00000048148.18, intron 9 of 18) -7131 ENSMUSG00000093276.1 ENSMUSG00000093276 ENSMUST00000175535 Gm26237 miRNA Interval_103280 chr3 37838812 37839083 + 0 NA exon (ENSMUSG00000106621.1, exon 1 of 1) TEC-exon (ENSMUSG00000106621.1, exon 1 of 1) 479 ENSMUSG00000106621.1 ENSMUSG00000106621 ENSMUST00000198394 Gm42752 TEC Interval_168258 chr9 78222930 78224232 + 0 NA Intergenic Intergenic -8736 ENSMUSG00000111015.1 ENSMUSG00000111015 ENSMUST00000216513 Gm3126 processed_pseudogene Interval_5831 chr1 92324174 92325888 + 0 NA intron (ENSMUSG00000101265.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000101265.1, intron 1 of 1) 521 ENSMUSG00000101265.1 ENSMUSG00000101265 ENSMUST00000187370 Gm29099 lincRNA Interval_159249 chr8 92288331 92288934 + 0 NA Intergenic Intergenic 50618 ENSMUSG00000095651.1 ENSMUSG00000095651 ENSMUST00000178584 Gm21817 lincRNA Interval_128183 chr5 111578870 111579639 + 0 NA Intergenic Intergenic -2307 ENSMUSG00000052848.7 ENSMUSG00000052848 ENSMUST00000198458 C130026L21Rik lincRNA Interval_136272 chr6 52451922 52452224 + 0 NA Intergenic Intergenic -40378 ENSMUSG00000107895.1 ENSMUSG00000107895 ENSMUST00000203771 1700094M24Rik lincRNA Interval_128029 chr5 110362949 110364852 + 0 NA intron (ENSMUSG00000043323.17, intron 13 of 13) protein_coding-intron (ENSMUSG00000043323.17, intron 11 of 11) 9742 ENSMUSG00000072754.9 ENSMUSG00000072754 ENSMUST00000190963 Lrcol1 protein_coding Interval_21846 chr11 4716514 4717118 + 0 NA intron (ENSMUSG00000009076.10, intron 1 of 5) protein_coding-intron (ENSMUSG00000009076.10, intron 1 of 5) 12108 ENSMUSG00000009076.10 ENSMUSG00000009076 ENSMUST00000141970 Zmat5 protein_coding Interval_16851 chr10 69259077 69260901 + 0 NA intron (ENSMUSG00000019944.14, intron 4 of 9) protein_coding-intron (ENSMUSG00000019944.14, intron 4 of 10) 40604 ENSMUSG00000019944.14 ENSMUSG00000019944 ENSMUST00000165765 Rhobtb1 protein_coding Interval_162062 chr8 124827504 124827832 + 0 NA intron (ENSMUSG00000036913.15, intron 8 of 10) protein_coding-intron (ENSMUSG00000036913.15, intron 8 of 10) -4030 ENSMUSG00000090118.1 ENSMUSG00000090118 ENSMUST00000161868 Gm16163 processed_transcript Interval_24632 chr11 35454123 35454559 + 0 NA intron (ENSMUSG00000056427.10, intron 2 of 3) protein_coding-intron (ENSMUSG00000056427.10, intron 4 of 35) 104272 ENSMUSG00000086311.1 ENSMUSG00000086311 ENSMUST00000124503 Gm12122 sense_intronic Interval_155938 chr8 41132417 41134457 + 0 NA intron (ENSMUSG00000045636.16, intron 1 of 1) protein_coding-intron (ENSMUSG00000045636.16, intron 1 of 13) 80327 ENSMUSG00000085672.1 ENSMUSG00000085672 ENSMUST00000125903 Gm16193 antisense Interval_57977 chr15 25816264 25816709 + 0 NA Intergenic Intergenic 24125 ENSMUSG00000115593.1 ENSMUSG00000115593 ENSMUST00000228649 Gm4824 processed_pseudogene Interval_86994 chr19 45430010 45431429 + 0 NA intron (ENSMUSG00000025217.15, intron 3 of 13) protein_coding-intron (ENSMUSG00000025217.15, intron 2 of 14) 20476 ENSMUSG00000057605.4 ENSMUSG00000057605 ENSMUST00000077435 Gm6807 processed_pseudogene Interval_164882 chr9 42774229 42774861 + 0 NA intron (ENSMUSG00000032017.14, intron 3 of 20) protein_coding-intron (ENSMUSG00000032017.14, intron 1 of 18) 87584 ENSMUSG00000076355.2 ENSMUSG00000076355 ENSMUST00000102400 Gm27509 miRNA Interval_113142 chr4 48593542 48593961 + 0 NA intron (ENSMUSG00000028347.14, intron 1 of 9) protein_coding-intron (ENSMUSG00000028347.14, intron 1 of 9) -43183 ENSMUSG00000028347.14 ENSMUSG00000028347 ENSMUST00000141720 Tmeff1 protein_coding Interval_99391 chr2 160551698 160552528 + 0 NA Intergenic Intergenic -31244 ENSMUSG00000078955.3 ENSMUSG00000078955 ENSMUST00000128681 Gm14222 sense_intronic Interval_57238 chr15 8061125 8061473 + 0 NA intron (ENSMUSG00000039828.7, intron 5 of 17) protein_coding-intron (ENSMUSG00000039828.7, intron 5 of 17) 37910 ENSMUSG00000039828.7 ENSMUSG00000039828 ENSMUST00000227371 Wdr70 protein_coding Interval_163314 chr9 20803990 20805004 + 0 NA intron (ENSMUSG00000004098.7, intron 8 of 41) protein_coding-intron (ENSMUSG00000004098.7, intron 8 of 66) -2537 ENSMUSG00000087728.1 ENSMUSG00000087728 ENSMUST00000157103 Gm26274 misc_RNA Interval_140165 chr6 114947087 114947402 + 0 NA intron (ENSMUSG00000030315.15, intron 2 of 5) protein_coding-intron (ENSMUSG00000030315.15, intron 2 of 4) -25428 ENSMUSG00000030315.15 ENSMUSG00000030315 ENSMUST00000204693 Vgll4 protein_coding Interval_151549 chr7 123449697 123450146 + 0 NA Intergenic Intergenic -13830 ENSMUSG00000030762.11 ENSMUSG00000030762 ENSMUST00000206106 Aqp8 protein_coding Interval_137026 chr6 66548069 66548331 + 0 NA TTS (ENSMUSG00000029910.14) protein_coding-TTS (ENSMUSG00000029910.14) 11896 ENSMUSG00000062905.2 ENSMUSG00000062905 ENSMUST00000227014 Vmn1r32 protein_coding Interval_133331 chr6 3345968 3346420 + 0 NA promoter-TSS (ENSMUSG00000106734.3) processed_transcript-promoter-TSS (ENSMUSG00000106734.3) -136 ENSMUSG00000106734.3 ENSMUSG00000106734 ENSMUST00000202514 Gm20559 processed_transcript Interval_7884 chr1 134367898 134370148 + 0 NA Intergenic Intergenic -7082 ENSMUSG00000042305.12 ENSMUSG00000042305 ENSMUST00000185903 Tmem183a protein_coding Interval_39008 chr12 84424016 84424867 + 0 NA intron (ENSMUSG00000057265.13, intron 4 of 4) protein_coding-intron (ENSMUSG00000057265.13, intron 6 of 11) -5778 ENSMUSG00000057265.13 ENSMUSG00000057265 ENSMUST00000221969 Bbof1 protein_coding Interval_154498 chr8 18699206 18699688 + 0 NA promoter-TSS (ENSMUSG00000031465.6) protein_coding-promoter-TSS (ENSMUSG00000031465.6) 100 ENSMUSG00000031465.6 ENSMUSG00000031465 ENSMUST00000170200 Angpt2 protein_coding Interval_3156 chr1 54161494 54162403 + 0 NA intron (ENSMUSG00000042807.15, intron 1 of 3) protein_coding-intron (ENSMUSG00000042807.15, intron 1 of 28) -6852 ENSMUSG00000102868.1 ENSMUSG00000102868 ENSMUST00000192858 Gm37633 TEC Interval_16619 chr10 66123728 66123915 + 0 NA promoter-TSS (ENSMUSG00000100000.6) lincRNA-promoter-TSS (ENSMUSG00000100000.6) 243 ENSMUSG00000100000.6 ENSMUSG00000100000 ENSMUST00000188279 1700023F02Rik lincRNA Interval_103332 chr3 38948049 38948245 + 0 NA intron (ENSMUSG00000046743.6, intron 2 of 3) protein_coding-intron (ENSMUSG00000046743.6, intron 2 of 16) 57205 ENSMUSG00000046743.6 ENSMUSG00000046743 ENSMUST00000129182 Fat4 protein_coding Interval_23032 chr11 19103025 19103541 + 0 NA Intergenic Intergenic 14151 ENSMUSG00000102585.1 ENSMUSG00000102585 ENSMUST00000193150 Gm37439 TEC Interval_99226 chr2 158221498 158222297 + 0 NA intron (ENSMUSG00000037813.13, intron 1 of 14) protein_coding-intron (ENSMUSG00000037813.13, intron 1 of 13) 7325 ENSMUSG00000037813.13 ENSMUSG00000037813 ENSMUST00000046944 D630003M21Rik protein_coding Interval_58887 chr15 39734320 39735935 + 0 NA Intergenic Intergenic -10807 ENSMUSG00000022303.9 ENSMUSG00000022303 ENSMUST00000227792 Dcstamp protein_coding Interval_127426 chr5 103843677 103844525 + 0 NA intron (ENSMUSG00000029313.18, intron 15 of 19) protein_coding-intron (ENSMUSG00000029313.18, intron 15 of 19) 30268 ENSMUSG00000029312.12 ENSMUSG00000029312 ENSMUST00000147184 Klhl8 protein_coding Interval_165595 chr9 50068451 50068927 + 0 NA Intergenic Intergenic 113811 ENSMUSG00000111682.1 ENSMUSG00000111682 ENSMUST00000215094 Gm47543 lincRNA Interval_162473 chr8 129226812 129227040 + 0 NA intron (ENSMUSG00000071302.10, intron 1 of 3) protein_coding-intron (ENSMUSG00000071302.10, intron 1 of 3) 7087 ENSMUSG00000071302.10 ENSMUSG00000071302 ENSMUST00000189965 2610044O15Rik8 protein_coding Interval_143128 chr7 3498224 3499181 + 0 NA intron (ENSMUSG00000053338.9, intron 1 of 5) protein_coding-intron (ENSMUSG00000053338.9, intron 1 of 4) 3922 ENSMUSG00000053338.9 ENSMUSG00000053338 ENSMUST00000065703 Tarm1 protein_coding Interval_104072 chr3 58181382 58182634 + 0 NA Intergenic Intergenic 18076 ENSMUSG00000104586.1 ENSMUSG00000104586 ENSMUST00000200072 4921539H07Rik lincRNA Interval_105603 chr3 88030454 88031523 + 0 NA exon (ENSMUSG00000105843.1, exon 1 of 1) TEC-exon (ENSMUSG00000105843.1, exon 1 of 1) 110 ENSMUSG00000105843.1 ENSMUSG00000105843 ENSMUST00000198195 Gm19439 TEC Interval_169463 chr9 97692185 97692991 + 0 NA intron (ENSMUSG00000032452.12, intron 2 of 16) protein_coding-intron (ENSMUSG00000032452.12, intron 2 of 17) 237567 ENSMUSG00000104462.1 ENSMUSG00000104462 ENSMUST00000191863 Gm37661 TEC Interval_67872 chr16 58454236 58454786 + 0 NA promoter-TSS (ENSMUSG00000035107.13) protein_coding-promoter-TSS (ENSMUSG00000035107.13) -5688 ENSMUSG00000035107.13 ENSMUSG00000035107 ENSMUST00000135415 Dcbld2 protein_coding Interval_48856 chr13 104083128 104083323 + 0 NA intron (ENSMUSG00000021710.11, intron 1 of 11) protein_coding-intron (ENSMUSG00000021710.11, intron 1 of 12) -26548 ENSMUSG00000042743.13 ENSMUSG00000042743 ENSMUST00000159574 Sgtb protein_coding Interval_138105 chr6 85209143 85209357 + 0 NA Intergenic Intergenic 15731 ENSMUSG00000033726.8 ENSMUSG00000033726 ENSMUST00000173919 Emx1 protein_coding Interval_31146 chr11 98438020 98439469 + 0 NA exon (ENSMUSG00000002580.7, exon 2 of 4) protein_coding-exon (ENSMUSG00000002580.7, exon 2 of 4) 247 ENSMUSG00000002580.7 ENSMUSG00000002580 ENSMUST00000002655 Mien1 protein_coding Interval_94016 chr2 80729776 80730365 + 0 NA Intergenic Intergenic 22481 ENSMUSG00000077404.1 ENSMUSG00000077404 ENSMUST00000104216 Gm25420 snoRNA Interval_58227 chr15 31223869 31224740 + 0 NA promoter-TSS (ENSMUSG00000039168.15) protein_coding-promoter-TSS (ENSMUSG00000039168.15) -256 ENSMUSG00000039168.15 ENSMUSG00000039168 ENSMUST00000185618 Dap protein_coding Interval_14121 chr10 27724329 27725485 + 0 NA Intergenic Intergenic -26580 ENSMUSG00000112610.1 ENSMUSG00000112610 ENSMUST00000218769 Gm30165 lincRNA Interval_137561 chr6 73231834 73233570 + 0 NA Intergenic Intergenic 9652 ENSMUSG00000107440.1 ENSMUSG00000107440 ENSMUST00000204604 Gm40377 TEC Interval_93962 chr2 80195862 80196646 + 0 NA Intergenic Intergenic 64324 ENSMUSG00000083519.1 ENSMUSG00000083519 ENSMUST00000121276 Gm13674 processed_pseudogene Interval_160410 chr8 109074877 109075670 + 0 NA promoter-TSS (ENSMUSG00000097393.8) lincRNA-promoter-TSS (ENSMUSG00000097393.8) 28 ENSMUSG00000097393.8 ENSMUSG00000097393 ENSMUST00000181098 D030068K23Rik lincRNA Interval_45039 chr13 51681069 51681741 + 0 NA promoter-TSS (ENSMUSG00000035139.14) protein_coding-promoter-TSS (ENSMUSG00000035139.14) 29608 ENSMUSG00000035139.14 ENSMUSG00000035139 ENSMUST00000153877 Secisbp2 protein_coding Interval_37870 chr12 72714394 72716603 + 0 NA Intergenic Intergenic 26084 ENSMUSG00000112989.1 ENSMUSG00000112989 ENSMUST00000221318 Gm48143 processed_pseudogene Interval_82488 chr18 74431131 74431636 + 0 NA Intergenic Intergenic 10578 ENSMUSG00000118303.1 ENSMUSG00000118303 ENSMUST00000235981 Gm50168 processed_pseudogene Interval_158914 chr8 87906638 87907423 + 0 NA intron (ENSMUSG00000045333.15, intron 1 of 7) protein_coding-intron (ENSMUSG00000045333.15, intron 1 of 7) 46832 ENSMUSG00000045333.15 ENSMUSG00000045333 ENSMUST00000173092 Zfp423 protein_coding Interval_102848 chr3 32155576 32155880 + 0 NA promoter-TSS (ENSMUSG00000037610.15) protein_coding-promoter-TSS (ENSMUSG00000037610.15) -386 ENSMUSG00000037610.15 ENSMUSG00000037610 ENSMUST00000194796 Kcnmb2 protein_coding Interval_145170 chr7 30436725 30437247 + 0 NA promoter-TSS (ENSMUSG00000006651.8) protein_coding-promoter-TSS (ENSMUSG00000006651.8) 4442 ENSMUSG00000109467.1 ENSMUSG00000109467 ENSMUST00000207662 Gm30646 processed_pseudogene Interval_1963 chr1 35024823 35025016 + 0 NA Intergenic Intergenic 39263 ENSMUSG00000103997.1 ENSMUSG00000103997 ENSMUST00000192315 Gm38027 processed_pseudogene Interval_55425 chr14 87095537 87095812 + 0 NA intron (ENSMUSG00000022021.14, intron 1 of 15) protein_coding-intron (ENSMUSG00000022021.14, intron 2 of 27) 45561 ENSMUSG00000022021.14 ENSMUSG00000022021 ENSMUST00000226134 Diaph3 protein_coding Interval_133766 chr6 11925383 11926767 + 0 NA promoter-TSS (ENSMUSG00000029629.17) protein_coding-promoter-TSS (ENSMUSG00000029629.17) -18592 ENSMUSG00000029632.7 ENSMUSG00000029632 ENSMUST00000204714 Ndufa4 protein_coding Interval_84024 chr19 6170916 6171621 + 0 NA TTS (ENSMUSG00000039699.14) protein_coding-TTS (ENSMUSG00000039699.14) 6828 ENSMUSG00000039699.14 ENSMUSG00000039699 ENSMUST00000141858 Batf2 protein_coding Interval_93665 chr2 75680835 75683660 + 0 NA intron (ENSMUSG00000015839.6, intron 1 of 4) protein_coding-intron (ENSMUSG00000015839.6, intron 1 of 4) 4591 ENSMUSG00000089015.1 ENSMUSG00000089015 ENSMUST00000158390 Gm24996 snRNA Interval_1397 chr1 21321665 21321924 + 0 NA Intergenic Intergenic -5474 ENSMUSG00000093963.1 ENSMUSG00000093963 ENSMUST00000178260 Gm21909 unprocessed_pseudogene Interval_150627 chr7 112907139 112907472 + 0 NA TTS (ENSMUSG00000055320.18) protein_coding-TTS (ENSMUSG00000055320.18) -46657 ENSMUSG00000098132.1 ENSMUSG00000098132 ENSMUST00000182858 Rassf10 protein_coding Interval_65979 chr16 30672448 30673597 + 0 NA Intergenic Intergenic 73299 ENSMUSG00000046546.3 ENSMUSG00000046546 ENSMUST00000059078 Fam43a protein_coding Interval_58671 chr15 36929049 36929363 + 0 NA intron (ENSMUSG00000115430.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000115430.1, intron 1 of 1) 2480 ENSMUSG00000115430.1 ENSMUSG00000115430 ENSMUST00000227301 Gm41300 lincRNA Interval_23105 chr11 19966371 19966841 + 0 NA intron (ENSMUSG00000045671.17, intron 1 of 5) protein_coding-intron (ENSMUSG00000045671.17, intron 1 of 5) 12036 ENSMUSG00000045671.17 ENSMUSG00000045671 ENSMUST00000123036 Spred2 protein_coding Interval_113272 chr4 52862337 52862571 + 0 NA Intergenic Intergenic -3218 ENSMUSG00000049648.4 ENSMUSG00000049648 ENSMUST00000051520 Olfr273 protein_coding Interval_66827 chr16 37936754 37939172 + 0 NA intron (ENSMUSG00000046961.8, intron 1 of 9) protein_coding-intron (ENSMUSG00000046961.8, intron 1 of 9) 21467 ENSMUSG00000046961.8 ENSMUSG00000046961 ENSMUST00000061274 Gpr156 protein_coding Interval_98035 chr2 146976552 146977520 + 0 NA Intergenic Intergenic -52516 ENSMUSG00000027433.5 ENSMUSG00000027433 ENSMUST00000137358 Xrn2 protein_coding Interval_159776 chr8 102786643 102786919 + 0 NA Intergenic Intergenic -5739 ENSMUSG00000110269.1 ENSMUSG00000110269 ENSMUST00000210042 Gm45258 TEC Interval_96430 chr2 122481433 122481858 + 0 NA Intergenic Intergenic -4272 ENSMUSG00000079071.2 ENSMUSG00000079071 ENSMUST00000132215 Slc28a2b protein_coding Interval_90972 chr2 33828269 33828663 + 0 NA intron (ENSMUSG00000038740.9, intron 4 of 7) protein_coding-intron (ENSMUSG00000038740.9, intron 4 of 9) 15509 ENSMUSG00000089596.1 ENSMUSG00000089596 ENSMUST00000158971 Nron misc_RNA Interval_165151 chr9 44857888 44858463 + 0 NA exon (ENSMUSG00000111017.1, exon 1 of 1) TEC-exon (ENSMUSG00000111017.1, exon 1 of 1) 1000 ENSMUSG00000111017.1 ENSMUSG00000111017 ENSMUST00000213541 Gm48314 TEC Interval_33346 chr11 116048532 116049013 + 0 NA promoter-TSS (ENSMUSG00000020770.13) protein_coding-promoter-TSS (ENSMUSG00000020770.13) 18449 ENSMUSG00000020770.13 ENSMUSG00000020770 ENSMUST00000140683 Unk protein_coding Interval_120309 chr4 145349078 145349311 + 0 NA Intergenic Intergenic -34030 ENSMUSG00000028602.12 ENSMUSG00000028602 ENSMUST00000123027 Tnfrsf8 protein_coding Interval_72756 chr17 31955110 31955318 + 0 NA intron (ENSMUSG00000002076.12, intron 3 of 3) protein_coding-intron (ENSMUSG00000002076.12, intron 7 of 7) 4680 ENSMUSG00000091548.2 ENSMUSG00000091548 ENSMUST00000171455 Gm17572 processed_pseudogene Interval_92072 chr2 52987281 52988160 + 0 NA intron (ENSMUSG00000036053.17, intron 1 of 26) protein_coding-intron (ENSMUSG00000036053.17, intron 1 of 26) 129860 ENSMUSG00000036053.17 ENSMUSG00000036053 ENSMUST00000050719 Fmnl2 protein_coding Interval_109042 chr3 135417514 135418141 + 0 NA intron (ENSMUSG00000028165.9, intron 1 of 1) protein_coding-intron (ENSMUSG00000028165.9, intron 1 of 2) 5252 ENSMUSG00000028165.9 ENSMUSG00000028165 ENSMUST00000198784 Cisd2 protein_coding Interval_156297 chr8 47192300 47194029 + 0 NA TTS (ENSMUSG00000038143.16) protein_coding-TTS (ENSMUSG00000038143.16) 34002 ENSMUSG00000109606.1 ENSMUSG00000109606 ENSMUST00000211539 Gm45537 TEC Interval_29235 chr11 81897206 81898447 + 0 NA intron (ENSMUSG00000020704.13, intron 1 of 9) protein_coding-intron (ENSMUSG00000020704.13, intron 1 of 9) 37153 ENSMUSG00000020703.3 ENSMUSG00000020703 ENSMUST00000021044 5530401A14Rik protein_coding Interval_9167 chr1 154416447 154416701 + 0 NA intron (ENSMUSG00000004110.17, intron 37 of 46) protein_coding-intron (ENSMUSG00000004110.17, intron 38 of 46) -92966 ENSMUSG00000100031.1 ENSMUSG00000100031 ENSMUST00000185981 Gm18727 processed_pseudogene Interval_116446 chr4 112312605 112312799 + 0 NA Intergenic Intergenic 80457 ENSMUSG00000070868.11 ENSMUSG00000070868 ENSMUST00000170945 Skint3 protein_coding Interval_42918 chr13 21383769 21384037 + 0 NA Intergenic Intergenic -2773 ENSMUSG00000081191.1 ENSMUSG00000081191 ENSMUST00000116054 Gm11271 processed_pseudogene Interval_76594 chr17 82169267 82170108 + 0 NA Intergenic Intergenic 22922 ENSMUSG00000117507.1 ENSMUSG00000117507 ENSMUST00000234943 Gm50045 processed_pseudogene Interval_18221 chr10 83817873 83818122 + 0 NA Intergenic Intergenic -6432 ENSMUSG00000112077.1 ENSMUSG00000112077 ENSMUST00000218819 Gm47245 processed_pseudogene Interval_24581 chr11 34785669 34787164 + 0 NA Intergenic Intergenic 37535 ENSMUSG00000069910.2 ENSMUSG00000069910 ENSMUST00000148387 Spdl1 protein_coding Interval_110701 chr4 6575874 6576428 + 0 NA Intergenic Intergenic 36590 ENSMUSG00000081388.1 ENSMUSG00000081388 ENSMUST00000117807 Gm11801 processed_pseudogene Interval_108017 chr3 120000109 120000821 + 0 NA Intergenic Intergenic 31734 ENSMUSG00000104726.1 ENSMUSG00000104726 ENSMUST00000195974 Gm18384 processed_pseudogene Interval_51648 chr14 31073442 31074246 + 0 NA intron (ENSMUSG00000042323.17, intron 16 of 27) protein_coding-intron (ENSMUSG00000042323.17, intron 16 of 27) 3591 ENSMUSG00000090305.2 ENSMUSG00000090305 ENSMUST00000171235 Gm5459 processed_pseudogene Interval_38334 chr12 77448861 77449069 + 0 NA intron (ENSMUSG00000021065.16, intron 4 of 6) protein_coding-intron (ENSMUSG00000021065.16, intron 9 of 11) 30548 ENSMUSG00000064833.1 ENSMUSG00000064833 ENSMUST00000082899 Gm25926 snRNA Interval_78069 chr18 7651753 7653211 + 0 NA Intergenic Intergenic -25628 ENSMUSG00000057440.8 ENSMUSG00000057440 ENSMUST00000233992 Mpp7 protein_coding Interval_111676 chr4 25719108 25719629 + 0 NA intron (ENSMUSG00000055373.8, intron 1 of 2) protein_coding-intron (ENSMUSG00000055373.8, intron 1 of 2) 80487 ENSMUSG00000055373.8 ENSMUSG00000055373 ENSMUST00000149875 Fut9 protein_coding Interval_135993 chr6 49299987 49300325 + 0 NA Intergenic Intergenic 13435 ENSMUSG00000107916.1 ENSMUSG00000107916 ENSMUST00000203717 Gm18011 processed_pseudogene Interval_168902 chr9 88481102 88483359 + 0 NA promoter-TSS (ENSMUSG00000032423.12) protein_coding-promoter-TSS (ENSMUSG00000032423.12) -1006 ENSMUSG00000032423.12 ENSMUSG00000032423 ENSMUST00000172508 Syncrip protein_coding Interval_64453 chr16 11502452 11503371 + 0 NA intron (ENSMUSG00000071669.14, intron 13 of 20) protein_coding-intron (ENSMUSG00000071669.14, intron 6 of 13) -6605 ENSMUSG00000082653.1 ENSMUSG00000082653 ENSMUST00000117770 Gm15897 processed_pseudogene Interval_102993 chr3 34066883 34067802 + 0 NA intron (ENSMUSG00000027680.15, intron 15 of 16) protein_coding-intron (ENSMUSG00000027680.15, intron 15 of 16) -3317 ENSMUSG00000105176.1 ENSMUSG00000105176 ENSMUST00000197014 Gm43668 TEC Interval_139624 chr6 103682612 103683217 + 0 NA intron (ENSMUSG00000030077.11, intron 9 of 26) protein_coding-intron (ENSMUSG00000030077.11, intron 9 of 26) -14836 ENSMUSG00000030077.11 ENSMUSG00000030077 ENSMUST00000205098 Chl1 protein_coding Interval_173219 chrX 74312515 74313788 + 0 NA promoter-TSS (ENSMUSG00000001962.8) protein_coding-promoter-TSS (ENSMUSG00000001962.8) -4211 ENSMUSG00000106409.1 ENSMUSG00000106409 ENSMUST00000199697 Mir7092 miRNA Interval_127355 chr5 103371708 103372059 + 0 NA Intergenic Intergenic -15185 ENSMUSG00000104684.1 ENSMUSG00000104684 ENSMUST00000200007 5430427N15Rik lincRNA Interval_23270 chr11 21080160 21080444 + 0 NA Intergenic Intergenic -10989 ENSMUSG00000020134.13 ENSMUSG00000020134 ENSMUST00000101477 Peli1 protein_coding Interval_32825 chr11 111198400 111198617 + 0 NA Intergenic Intergenic -77592 ENSMUSG00000082272.1 ENSMUSG00000082272 ENSMUST00000121873 Gm11675 processed_pseudogene Interval_55841 chr14 101381130 101381416 + 0 NA Intergenic Intergenic 37729 ENSMUSG00000115538.1 ENSMUSG00000115538 ENSMUST00000227762 Hspd1-ps5 processed_pseudogene Interval_123412 chr5 32343905 32344846 + 0 NA intron (ENSMUSG00000029134.14, intron 47 of 58) protein_coding-intron (ENSMUSG00000029134.14, intron 46 of 57) 10508 ENSMUSG00000107078.1 ENSMUSG00000107078 ENSMUST00000202688 Gm36840 antisense Interval_120684 chr4 150092364 150092851 + 0 NA intron (ENSMUSG00000047875.6, intron 1 of 3) protein_coding-intron (ENSMUSG00000047875.6, intron 1 of 3) 5242 ENSMUSG00000047875.6 ENSMUSG00000047875 ENSMUST00000094451 Gpr157 protein_coding Interval_170305 chr9 106819363 106819679 + 0 NA Intergenic Intergenic -6923 ENSMUSG00000088812.1 ENSMUSG00000088812 ENSMUST00000158187 Gm22384 snRNA Interval_146637 chr7 48958562 48959543 + 0 NA promoter-TSS (ENSMUSG00000052512.17) protein_coding-promoter-TSS (ENSMUSG00000052512.17) -18934 ENSMUSG00000109507.1 ENSMUSG00000109507 ENSMUST00000208249 Gm18559 processed_pseudogene Interval_80536 chr18 43526689 43527046 + 0 NA exon (ENSMUSG00000118018.1, exon 1 of 1) lincRNA-exon (ENSMUSG00000118018.1, exon 1 of 1) 3013 ENSMUSG00000118018.1 ENSMUSG00000118018 ENSMUST00000235649 AC156546.1 lincRNA Interval_13482 chr10 18561627 18562010 + 0 NA Intergenic Intergenic 4137 ENSMUSG00000111173.1 ENSMUSG00000111173 ENSMUST00000215943 Gm48297 processed_pseudogene Interval_111728 chr4 26879140 26880019 + 0 NA Intergenic Intergenic -174130 ENSMUSG00000086257.1 ENSMUSG00000086257 ENSMUST00000154459 4930548K13Rik lincRNA Interval_15313 chr10 44440500 44442198 + 0 NA exon (ENSMUSG00000038151.13, exon 6 of 8) protein_coding-exon (ENSMUSG00000038151.13, exon 6 of 8) 15861 ENSMUSG00000038151.13 ENSMUSG00000038151 ENSMUST00000167340 Prdm1 protein_coding Interval_46264 chr13 63193641 63193926 + 0 NA intron (ENSMUSG00000021458.17, intron 1 of 5) protein_coding-intron (ENSMUSG00000021458.17, intron 8 of 15) -17167 ENSMUSG00000113853.1 ENSMUSG00000113853 ENSMUST00000221858 Gm47583 TEC Interval_20346 chr10 117025719 117026224 + 0 NA TTS (ENSMUSG00000020169.4) protein_coding-TTS (ENSMUSG00000020169.4) -17775 ENSMUSG00000112242.1 ENSMUSG00000112242 ENSMUST00000217799 Gm10747 lincRNA Interval_4206 chr1 71620545 71621000 + 0 NA exon (ENSMUSG00000026193.15, exon 21 of 46) protein_coding-exon (ENSMUSG00000026193.15, exon 21 of 46) -32116 ENSMUSG00000073652.10 ENSMUSG00000073652 ENSMUST00000125934 Apol7d antisense Interval_84627 chr19 14523246 14523942 + 0 NA intron (ENSMUSG00000024642.17, intron 6 of 19) protein_coding-intron (ENSMUSG00000024642.17, intron 6 of 19) 71945 ENSMUSG00000024642.17 ENSMUSG00000024642 ENSMUST00000235975 Tle4 protein_coding Interval_144016 chr7 18990348 18992534 + 0 NA promoter-TSS (ENSMUSG00000048481.15) protein_coding-promoter-TSS (ENSMUSG00000048481.15) 122 ENSMUSG00000048481.15 ENSMUSG00000048481 ENSMUST00000130268 Mypop protein_coding Interval_49 GL456212.1 79432 80163 + 0 NA NA NA NA NA Interval_22851 chr11 16695854 16696091 + 0 NA Intergenic Intergenic 36739 ENSMUSG00000064831.1 ENSMUSG00000064831 ENSMUST00000082897 Gm25698 snRNA Interval_98339 chr2 151600256 151601031 + 0 NA TTS (ENSMUSG00000027457.15) protein_coding-TTS (ENSMUSG00000027457.15) 28021 ENSMUSG00000027456.8 ENSMUSG00000027456 ENSMUST00000028950 Sdcbp2 protein_coding Interval_36210 chr12 39538672 39539019 + 0 NA Intergenic Intergenic -11890 ENSMUSG00000113343.1 ENSMUSG00000113343 ENSMUST00000222673 Gm34923 lincRNA Interval_73210 chr17 35588322 35588581 + 0 NA Intergenic Intergenic -13127 ENSMUSG00000090509.2 ENSMUSG00000090509 ENSMUST00000171166 Sfta2 protein_coding Interval_45829 chr13 58395732 58396156 + 0 NA promoter-TSS (ENSMUSG00000021546.18) protein_coding-promoter-TSS (ENSMUSG00000021546.18) -2055 ENSMUSG00000021546.18 ENSMUSG00000021546 ENSMUST00000223822 Hnrnpk protein_coding Interval_107444 chr3 107749490 107750018 + 0 NA TTS (ENSMUSG00000014599.10) protein_coding-TTS (ENSMUSG00000014599.10) 987 ENSMUSG00000014599.10 ENSMUSG00000014599 ENSMUST00000153114 Csf1 protein_coding Interval_155570 chr8 34689003 34690268 + 0 NA Intergenic Intergenic -30266 ENSMUSG00000109846.1 ENSMUSG00000109846 ENSMUST00000210130 Gm45627 lincRNA Interval_69396 chr16 92674111 92674932 + 0 NA intron (ENSMUSG00000022952.17, intron 2 of 5) protein_coding-intron (ENSMUSG00000022952.17, intron 4 of 7) 61707 ENSMUSG00000097139.3 ENSMUSG00000097139 ENSMUST00000180989 Gm26626 antisense Interval_82837 chr18 77308666 77309304 + 0 NA intron (ENSMUSG00000032818.16, intron 1 of 20) protein_coding-intron (ENSMUSG00000032818.16, intron 1 of 20) -10307 ENSMUSG00000118108.1 ENSMUSG00000118108 ENSMUST00000238018 Gm50284 antisense Interval_141610 chr6 131292506 131293408 + 0 NA promoter-TSS (ENSMUSG00000030188.12) protein_coding-promoter-TSS (ENSMUSG00000030188.12) -619 ENSMUSG00000107658.1 ENSMUSG00000107658 ENSMUST00000203734 Gm44958 processed_pseudogene Interval_172598 chrX 37682774 37683741 + 0 NA intron (ENSMUSG00000081195.2, intron 1 of 1) unprocessed_pseudogene-intron (ENSMUSG00000081195.2, intron 1 of 1) 174 ENSMUSG00000081195.2 ENSMUSG00000081195 ENSMUST00000117421 Rhox2-ps unprocessed_pseudogene Interval_25705 chr11 50913220 50913824 + 0 NA intron (ENSMUSG00000049321.17, intron 1 of 4) protein_coding-intron (ENSMUSG00000049321.17, intron 1 of 6) 2612 ENSMUSG00000049321.17 ENSMUSG00000049321 ENSMUST00000151027 Zfp2 protein_coding Interval_159295 chr8 92892169 92892704 + 0 NA intron (ENSMUSG00000033192.5, intron 9 of 11) protein_coding-intron (ENSMUSG00000033192.5, intron 11 of 13) -8971 ENSMUSG00000078144.4 ENSMUSG00000078144 ENSMUST00000104947 Capns2 protein_coding Interval_96303 chr2 121413120 121414612 + 0 NA promoter-TSS (ENSMUSG00000027248.13) protein_coding-promoter-TSS (ENSMUSG00000027248.13) -17 ENSMUSG00000027248.13 ENSMUSG00000027248 ENSMUST00000130450 Pdia3 protein_coding Interval_9672 chr1 160933524 160934729 + 0 NA intron (ENSMUSG00000040423.11, intron 2 of 20) protein_coding-intron (ENSMUSG00000040423.11, intron 1 of 18) 18802 ENSMUSG00000103739.1 ENSMUSG00000103739 ENSMUST00000195401 Gm37653 TEC Interval_73480 chr17 37861070 37862222 + 0 NA TTS (ENSMUSG00000092458.1) processed_pseudogene-TTS (ENSMUSG00000092458.1) 839 ENSMUSG00000092458.1 ENSMUSG00000092458 ENSMUST00000173594 Gm18737 processed_pseudogene Interval_61747 chr15 83779364 83780677 + 0 NA promoter-TSS (ENSMUSG00000041708.12) protein_coding-promoter-TSS (ENSMUSG00000041708.12) -11994 ENSMUSG00000041708.12 ENSMUSG00000041708 ENSMUST00000148868 Mpped1 protein_coding Interval_3771 chr1 62986472 62986739 + 0 NA intron (ENSMUSG00000040865.15, intron 9 of 12) protein_coding-intron (ENSMUSG00000040865.15, intron 9 of 12) -39137 ENSMUSG00000104991.1 ENSMUSG00000104991 ENSMUST00000199516 Gm44468 miRNA Interval_1453 chr1 23674566 23674927 + 0 NA Intergenic Intergenic -87007 ENSMUSG00000026156.8 ENSMUSG00000026156 ENSMUST00000140583 B3gat2 protein_coding Interval_105446 chr3 86623183 86623423 + 0 NA TTS (ENSMUSG00000028080.16) protein_coding-TTS (ENSMUSG00000028080.16) 48865 ENSMUSG00000094392.1 ENSMUSG00000094392 ENSMUST00000119949 Gm3788 processed_pseudogene Interval_53408 chr14 57075749 57076024 + 0 NA Intergenic Intergenic -18163 ENSMUSG00000048582.7 ENSMUSG00000048582 ENSMUST00000223792 Gja3 protein_coding Interval_5410 chr1 88584750 88585044 + 0 NA Intergenic Intergenic 33380 ENSMUSG00000100798.1 ENSMUSG00000100798 ENSMUST00000189394 Gm19589 lincRNA Interval_45983 chr13 59778864 59780326 + 0 NA exon (ENSMUSG00000035248.9, exon 1 of 2) protein_coding-exon (ENSMUSG00000035248.9, exon 1 of 2) 1983 ENSMUSG00000114835.1 ENSMUSG00000114835 ENSMUST00000226102 Gm48194 sense_intronic Interval_93031 chr2 69670565 69671014 + 0 NA exon (ENSMUSG00000075307.3, exon 1 of 6) protein_coding-exon (ENSMUSG00000075307.3, exon 1 of 6) 669 ENSMUSG00000075307.3 ENSMUSG00000075307 ENSMUST00000100050 Klhl41 protein_coding Interval_169736 chr9 100769644 100769989 + 0 NA intron (ENSMUSG00000037286.15, intron 5 of 8) protein_coding-intron (ENSMUSG00000037286.15, intron 5 of 8) 66603 ENSMUSG00000104272.1 ENSMUSG00000104272 ENSMUST00000195122 Gm38297 TEC Interval_52802 chr14 50763693 50763927 + 0 NA Intergenic Intergenic -5438 ENSMUSG00000078125.2 ENSMUSG00000078125 ENSMUST00000080330 Gm10916 processed_pseudogene Interval_120888 chr4 151335209 151335620 + 0 NA intron (ENSMUSG00000014592.21, intron 5 of 24) protein_coding-intron (ENSMUSG00000014592.21, intron 5 of 23) -41056 ENSMUSG00000085593.1 ENSMUSG00000085593 ENSMUST00000129097 4930589P08Rik antisense Interval_94521 chr2 91894325 91895070 + 0 NA intron (ENSMUSG00000040506.16, intron 14 of 17) protein_coding-intron (ENSMUSG00000040506.16, intron 13 of 16) 26231 ENSMUSG00000075036.1 ENSMUSG00000075036 ENSMUST00000099710 Gm10805 pseudogene Interval_77395 chr17 88426705 88427312 + 0 NA Intergenic Intergenic -13727 ENSMUSG00000034998.18 ENSMUSG00000034998 ENSMUST00000141052 Foxn2 protein_coding Interval_142136 chr6 137540532 137543125 + 0 NA intron (ENSMUSG00000015766.14, intron 1 of 20) protein_coding-intron (ENSMUSG00000015766.14, intron 2 of 21) 28931 ENSMUSG00000015766.14 ENSMUSG00000015766 ENSMUST00000205037 Eps8 protein_coding Interval_88856 chr2 11694450 11694710 + 0 NA Intergenic Intergenic -10807 ENSMUSG00000023206.16 ENSMUSG00000023206 ENSMUST00000139774 Il15ra protein_coding Interval_25475 chr11 48823665 48824368 + 0 NA Intergenic Intergenic 2639 ENSMUSG00000078154.3 ENSMUSG00000078154 ENSMUST00000104959 Gm12184 protein_coding Interval_85935 chr19 33584184 33584585 + 0 NA intron (ENSMUSG00000024766.15, intron 3 of 10) protein_coding-intron (ENSMUSG00000024766.15, intron 3 of 10) 5623 ENSMUSG00000118513.1 ENSMUSG00000118513 ENSMUST00000239059 AC141640.1 unprocessed_pseudogene Interval_121252 chr4 154418706 154419535 + 0 NA intron (ENSMUSG00000039410.16, intron 3 of 15) protein_coding-intron (ENSMUSG00000039410.16, intron 3 of 16) 82993 ENSMUSG00000097871.1 ENSMUSG00000097871 ENSMUST00000181143 B230104I21Rik lincRNA Interval_146050 chr7 43495229 43496000 + 0 NA exon (ENSMUSG00000013353.10, exon 7 of 8) protein_coding-exon (ENSMUSG00000013353.10, exon 7 of 8) 10313 ENSMUSG00000013353.10 ENSMUSG00000013353 ENSMUST00000168883 4931406B18Rik protein_coding Interval_91680 chr2 47320845 47322031 + 0 NA Intergenic Intergenic -220546 ENSMUSG00000092853.1 ENSMUSG00000092853 ENSMUST00000175112 Gm25959 miRNA Interval_66988 chr16 39055958 39056975 + 0 NA Intergenic Intergenic 129257 ENSMUSG00000089607.1 ENSMUSG00000089607 ENSMUST00000158982 Gm22500 snRNA Interval_97089 chr2 131159436 131160870 + 0 NA promoter-TSS (ENSMUSG00000027327.16) protein_coding-promoter-TSS (ENSMUSG00000027327.16) -119 ENSMUSG00000027327.16 ENSMUSG00000027327 ENSMUST00000152961 1700037H04Rik protein_coding Interval_138295 chr6 87008578 87010442 + 0 NA promoter-TSS (ENSMUSG00000029993.16) protein_coding-promoter-TSS (ENSMUSG00000029993.16) -370 ENSMUSG00000029993.16 ENSMUSG00000029993 ENSMUST00000204103 Nfu1 protein_coding Interval_71948 chr17 27153504 27154465 + 0 NA intron (ENSMUSG00000024210.3, intron 2 of 5) protein_coding-intron (ENSMUSG00000024210.3, intron 2 of 5) 13811 ENSMUSG00000024210.3 ENSMUSG00000024210 ENSMUST00000025046 Ip6k3 protein_coding Interval_147268 chr7 65312326 65312641 + 0 NA intron (ENSMUSG00000030516.14, intron 21 of 27) protein_coding-intron (ENSMUSG00000030516.14, intron 20 of 26) 54299 ENSMUSG00000108338.1 ENSMUSG00000108338 ENSMUST00000206550 Gm44794 TEC Interval_151784 chr7 126642475 126644103 + 0 NA Intergenic Intergenic 6305 ENSMUSG00000066175.2 ENSMUSG00000066175 ENSMUST00000084587 2510046G10Rik antisense Interval_113444 chr4 55033243 55033513 + 0 NA intron (ENSMUSG00000060206.11, intron 7 of 12) protein_coding-intron (ENSMUSG00000060206.11, intron 5 of 10) -83185 ENSMUSG00000082704.1 ENSMUSG00000082704 ENSMUST00000120116 Gm12515 processed_pseudogene Interval_150133 chr7 107224498 107224748 + 0 NA Intergenic Intergenic 15178 ENSMUSG00000073894.1 ENSMUSG00000073894 ENSMUST00000098135 Rbmxl2 protein_coding Interval_15539 chr10 50909714 50911204 + 0 NA intron (ENSMUSG00000019913.4, intron 7 of 10) protein_coding-intron (ENSMUSG00000019913.4, intron 7 of 10) 15705 ENSMUSG00000019913.4 ENSMUSG00000019913 ENSMUST00000020071 Sim1 protein_coding Interval_13260 chr10 13690563 13691102 + 0 NA intron (ENSMUSG00000019806.13, intron 3 of 5) protein_coding-intron (ENSMUSG00000019806.13, intron 3 of 5) 63634 ENSMUSG00000112055.1 ENSMUSG00000112055 ENSMUST00000219684 Gm48773 lincRNA Interval_163391 chr9 21230469 21230790 + 0 NA TTS (ENSMUSG00000003308.15) protein_coding-TTS (ENSMUSG00000003308.15) 5258 ENSMUSG00000097439.6 ENSMUSG00000097439 ENSMUST00000193429 Gm16754 antisense Interval_161850 chr8 123190758 123192758 + 0 NA intron (ENSMUSG00000019278.5, intron 1 of 10) protein_coding-intron (ENSMUSG00000019278.5, intron 1 of 10) -1736 ENSMUSG00000019278.5 ENSMUSG00000019278 ENSMUST00000212409 Dpep1 protein_coding Interval_75035 chr17 61823746 61823937 + 0 NA Intergenic Intergenic 42158 ENSMUSG00000098156.1 ENSMUSG00000098156 ENSMUST00000182372 Gm27023 processed_pseudogene Interval_78557 chr18 14682017 14683640 + 0 NA promoter-TSS (ENSMUSG00000037013.17) protein_coding-promoter-TSS (ENSMUSG00000037013.17) -34898 ENSMUSG00000094306.1 ENSMUSG00000094306 ENSMUST00000084007 Gm24924 snRNA Interval_55138 chr14 78545971 78546282 + 0 NA Intergenic Intergenic -42155 ENSMUSG00000022016.17 ENSMUSG00000022016 ENSMUST00000226416 Akap11 protein_coding Interval_40997 chr12 110512172 110513696 + 0 NA intron (ENSMUSG00000017843.14, intron 1 of 11) protein_coding-intron (ENSMUSG00000017843.14, intron 1 of 13) -27318 ENSMUSG00000113585.1 ENSMUSG00000113585 ENSMUST00000222863 Gm19605 processed_transcript Interval_134648 chr6 30152297 30152612 + 0 NA TTS (ENSMUSG00000058440.14) protein_coding-TTS (ENSMUSG00000058440.14) -8327 ENSMUSG00000065343.1 ENSMUSG00000065343 ENSMUST00000083409 Gm25580 misc_RNA Interval_147081 chr7 62212038 62212298 + 0 NA Intergenic Intergenic -2689 ENSMUSG00000045813.7 ENSMUSG00000045813 ENSMUST00000054860 Gm9801 lincRNA Interval_7497 chr1 131847312 131847671 + 0 NA TTS (ENSMUSG00000013275.9) protein_coding-TTS (ENSMUSG00000013275.9) 4651 ENSMUSG00000013275.9 ENSMUSG00000013275 ENSMUST00000146360 Slc41a1 protein_coding Interval_37745 chr12 71627054 71627701 + 0 NA intron (ENSMUSG00000114028.1, intron 2 of 5) lincRNA-intron (ENSMUSG00000114028.1, intron 2 of 5) 49412 ENSMUSG00000114028.1 ENSMUSG00000114028 ENSMUST00000222033 9630002D21Rik lincRNA Interval_103891 chr3 54585649 54586581 + 0 NA Intergenic Intergenic 48453 ENSMUSG00000104831.1 ENSMUSG00000104831 ENSMUST00000197444 B020017C02Rik processed_pseudogene Interval_144900 chr7 28824694 28826639 + 0 NA promoter-TSS (ENSMUSG00000053898.12) protein_coding-promoter-TSS (ENSMUSG00000053898.12) 449 ENSMUSG00000053898.12 ENSMUSG00000053898 ENSMUST00000137834 Ech1 protein_coding Interval_71682 chr17 25397482 25398569 + 0 NA intron (ENSMUSG00000024112.16, intron 2 of 8) protein_coding-intron (ENSMUSG00000024112.16, intron 2 of 34) -8553 ENSMUSG00000024112.16 ENSMUSG00000024112 ENSMUST00000159052 Cacna1h protein_coding Interval_7372 chr1 130686097 130686631 + 0 NA intron (ENSMUSG00000101904.1, intron 12 of 17) protein_coding-intron (ENSMUSG00000101904.1, intron 12 of 17) -2293 ENSMUSG00000100257.1 ENSMUSG00000100257 ENSMUST00000189393 C4bp-ps1 unprocessed_pseudogene Interval_17402 chr10 76379920 76380360 + 0 NA intron (ENSMUSG00000001151.10, intron 19 of 29) protein_coding-intron (ENSMUSG00000001151.10, intron 31 of 41) -8875 ENSMUSG00000101695.1 ENSMUSG00000101695 ENSMUST00000187079 1700094J05Rik antisense Interval_125733 chr5 73657276 73657470 + 0 NA promoter-TSS (ENSMUSG00000029155.16) protein_coding-promoter-TSS (ENSMUSG00000029155.16) -1888 ENSMUSG00000029155.16 ENSMUSG00000029155 ENSMUST00000178631 Spata18 protein_coding Interval_134811 chr6 31717186 31717956 + 0 NA intron (ENSMUSG00000086804.8, intron 4 of 6) lincRNA-intron (ENSMUSG00000086804.8, intron 2 of 2) -10581 ENSMUSG00000107010.1 ENSMUSG00000107010 ENSMUST00000202780 Gm43293 lincRNA Interval_174845 chrX 169684999 169685873 + 0 NA intron (ENSMUSG00000035299.16, intron 1 of 9) protein_coding-intron (ENSMUSG00000035299.16, intron 1 of 9) 10463 ENSMUSG00000065716.1 ENSMUSG00000065716 ENSMUST00000083782 Gm25651 snoRNA Interval_107243 chr3 104863842 104865640 + 0 NA promoter-TSS (ENSMUSG00000070372.11) protein_coding-promoter-TSS (ENSMUSG00000070372.11) -326 ENSMUSG00000045576.16 ENSMUSG00000045576 ENSMUST00000140457 St7l protein_coding Interval_82908 chr18 78773205 78773459 + 0 NA intron (ENSMUSG00000024548.11, intron 5 of 5) protein_coding-intron (ENSMUSG00000024548.11, intron 5 of 5) 125204 ENSMUSG00000088733.1 ENSMUSG00000088733 ENSMUST00000158108 Gm23895 snRNA Interval_61556 chr15 82313818 82314607 + 0 NA exon (ENSMUSG00000022455.4, exon 6 of 6) protein_coding-exon (ENSMUSG00000022455.4, exon 6 of 6) 15258 ENSMUSG00000022455.4 ENSMUSG00000022455 ENSMUST00000023089 Wbp2nl protein_coding Interval_31501 chr11 101052996 101053176 + 0 NA intron (ENSMUSG00000019302.16, intron 19 of 21) protein_coding-intron (ENSMUSG00000019302.16, intron 19 of 21) -18466 ENSMUSG00000001751.9 ENSMUSG00000001751 ENSMUST00000138409 Naglu protein_coding Interval_138455 chr6 88345472 88345701 + 0 NA intron (ENSMUSG00000033216.9, intron 4 of 7) protein_coding-intron (ENSMUSG00000033216.9, intron 4 of 6) 8020 ENSMUSG00000107472.1 ENSMUSG00000107472 ENSMUST00000203631 Gm44265 sense_intronic Interval_135429 chr6 39329809 39330313 + 0 NA Intergenic Intergenic 47596 ENSMUSG00000029924.12 ENSMUSG00000029924 ENSMUST00000202785 Slc37a3 protein_coding Interval_95134 chr2 104173068 104173569 + 0 NA intron (ENSMUSG00000068373.15, intron 16 of 20) protein_coding-intron (ENSMUSG00000068373.15, intron 16 of 20) 50549 ENSMUSG00000032671.5 ENSMUSG00000032671 ENSMUST00000040374 A930018P22Rik protein_coding Interval_25645 chr11 50387167 50387621 + 0 NA TTS (ENSMUSG00000007850.16) protein_coding-TTS (ENSMUSG00000007850.16) 4215 ENSMUSG00000007850.16 ENSMUSG00000007850 ENSMUST00000151537 Hnrnph1 protein_coding Interval_5929 chr1 93286969 93287266 + 0 NA intron (ENSMUSG00000047793.13, intron 1 of 4) protein_coding-intron (ENSMUSG00000047793.13, intron 27 of 30) 12568 ENSMUSG00000098997.1 ENSMUSG00000098997 ENSMUST00000185062 Mir6901 miRNA Interval_19464 chr10 99622197 99622421 + 0 NA intron (ENSMUSG00000111962.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000111962.1, intron 1 of 2) 13138 ENSMUSG00000111962.1 ENSMUSG00000111962 ENSMUST00000218263 Gm20110 lincRNA Interval_101477 chr2 181678746 181681057 + 0 NA promoter-TSS (ENSMUSG00000059540.15) protein_coding-promoter-TSS (ENSMUSG00000059540.15) -3674 ENSMUSG00000059540.15 ENSMUSG00000059540 ENSMUST00000126844 Tcea2 protein_coding Interval_90386 chr2 30118978 30120109 + 0 NA intron (ENSMUSG00000039686.14, intron 1 of 7) protein_coding-intron (ENSMUSG00000039686.14, intron 1 of 15) 5042 ENSMUSG00000039686.14 ENSMUSG00000039686 ENSMUST00000149818 Zer1 protein_coding Interval_15178 chr10 43147927 43148372 + 0 NA intron (ENSMUSG00000038248.8, intron 3 of 6) protein_coding-intron (ENSMUSG00000038248.8, intron 3 of 6) -6067 ENSMUSG00000099893.1 ENSMUSG00000099893 ENSMUST00000187332 Gm29245 TEC Interval_31924 chr11 103892380 103893524 + 0 NA intron (ENSMUSG00000034187.18, intron 8 of 8) protein_coding-intron (ENSMUSG00000034187.18, intron 8 of 20) -12709 ENSMUSG00000092540.1 ENSMUSG00000092540 ENSMUST00000172606 Gm8738 processed_pseudogene Interval_11031 chr1 178571588 178572456 + 0 NA intron (ENSMUSG00000026494.12, intron 2 of 3) protein_coding-intron (ENSMUSG00000026494.12, intron 2 of 14) 42897 ENSMUSG00000026494.12 ENSMUSG00000026494 ENSMUST00000160789 Kif26b protein_coding Interval_165305 chr9 46154920 46156862 + 0 NA intron (ENSMUSG00000034135.15, intron 1 of 20) protein_coding-intron (ENSMUSG00000034135.15, intron 4 of 22) 32761 ENSMUSG00000034135.15 ENSMUSG00000034135 ENSMUST00000138338 Sik3 protein_coding Interval_121749 chr5 6516849 6517755 + 0 NA Intergenic Intergenic -88070 ENSMUSG00000104663.1 ENSMUSG00000104663 ENSMUST00000197670 Gm3203 processed_pseudogene Interval_95758 chr2 115872799 115873352 + 0 NA promoter-TSS (ENSMUSG00000027210.20) protein_coding-promoter-TSS (ENSMUSG00000027210.20) -4208 ENSMUSG00000027210.20 ENSMUSG00000027210 ENSMUST00000138526 Meis2 protein_coding Interval_83264 chr18 83108629 83109142 + 0 NA promoter-TSS (ENSMUSG00000100430.2) lincRNA-promoter-TSS (ENSMUSG00000100430.2) -1025 ENSMUSG00000100430.2 ENSMUSG00000100430 ENSMUST00000236396 1700095A13Rik lincRNA Interval_77057 chr17 86122458 86123364 + 0 NA intron (ENSMUSG00000024135.10, intron 7 of 20) protein_coding-intron (ENSMUSG00000024135.10, intron 7 of 20) -52664 ENSMUSG00000117546.1 ENSMUSG00000117546 ENSMUST00000234087 AC154542.1 TEC Interval_121697 chr5 5465187 5465560 + 0 NA intron (ENSMUSG00000079666.8, intron 3 of 7) protein_coding-intron (ENSMUSG00000079666.8, intron 2 of 6) 13707 ENSMUSG00000079666.8 ENSMUSG00000079666 ENSMUST00000156282 1700015F17Rik protein_coding Interval_77162 chr17 86991556 86991985 + 0 NA intron (ENSMUSG00000024143.15, intron 3 of 4) protein_coding-intron (ENSMUSG00000024143.15, intron 2 of 4) -2825 ENSMUSG00000024143.15 ENSMUSG00000024143 ENSMUST00000234309 Rhoq protein_coding Interval_103903 chr3 54763825 54764804 + 0 NA intron (ENSMUSG00000027796.2, intron 1 of 5) protein_coding-intron (ENSMUSG00000027796.2, intron 1 of 5) 8732 ENSMUSG00000027796.2 ENSMUSG00000027796 ENSMUST00000029371 Smad9 protein_coding Interval_122176 chr5 18851672 18853239 + 0 NA Intergenic Intergenic -12122 ENSMUSG00000089364.1 ENSMUSG00000089364 ENSMUST00000158739 Gm23822 snoRNA Interval_95403 chr2 108440664 108441047 + 0 NA Intergenic Intergenic 6229 ENSMUSG00000083590.1 ENSMUSG00000083590 ENSMUST00000117368 Gm13916 processed_pseudogene Interval_80186 chr18 38097635 38098539 + 0 NA Intergenic Intergenic 74558 ENSMUSG00000118056.1 ENSMUSG00000118056 ENSMUST00000236681 Gm30093 lincRNA Interval_168440 chr9 80488694 80488973 + 0 NA Intergenic Intergenic -23395 ENSMUSG00000032343.15 ENSMUSG00000032343 ENSMUST00000185068 Impg1 protein_coding Interval_69662 chr16 95017059 95017854 + 0 NA Intergenic Intergenic -84948 ENSMUSG00000116667.1 ENSMUSG00000116667 ENSMUST00000232306 Gm49641 processed_pseudogene Interval_46254 chr13 63057290 63057514 + 0 NA intron (ENSMUSG00000021458.17, intron 2 of 15) protein_coding-intron (ENSMUSG00000021458.17, intron 2 of 15) 47443 ENSMUSG00000113708.1 ENSMUSG00000113708 ENSMUST00000220958 Gm47584 TEC Interval_162186 chr8 125777542 125777915 + 0 NA intron (ENSMUSG00000060212.13, intron 10 of 18) protein_coding-intron (ENSMUSG00000060212.13, intron 25 of 33) 41893 ENSMUSG00000031851.14 ENSMUSG00000031851 ENSMUST00000152189 Ntpcr protein_coding Interval_51251 chr14 25545230 25546204 + 0 NA intron (ENSMUSG00000007817.15, intron 3 of 23) protein_coding-intron (ENSMUSG00000007817.15, intron 3 of 23) 11278 ENSMUSG00000093081.1 ENSMUSG00000093081 ENSMUST00000175340 Mir3075 miRNA Interval_95271 chr2 105415694 105415948 + 0 NA Intergenic Intergenic -20473 ENSMUSG00000005973.6 ENSMUSG00000005973 ENSMUST00000127019 Rcn1 protein_coding Interval_34083 chr11 120401541 120401879 + 0 NA intron (ENSMUSG00000039703.15, intron 12 of 15) protein_coding-intron (ENSMUSG00000039703.15, intron 12 of 16) -18207 ENSMUSG00000039703.15 ENSMUSG00000039703 ENSMUST00000136095 Nploc4 protein_coding Interval_137842 chr6 82879437 82879803 + 0 NA intron (ENSMUSG00000100291.6, intron 3 of 3) lincRNA-intron (ENSMUSG00000100291.6, intron 3 of 3) 2212 ENSMUSG00000100291.6 ENSMUSG00000100291 ENSMUST00000191170 2310069B03Rik lincRNA Interval_67651 chr16 55480428 55480858 + 0 NA Intergenic Intergenic -14088 ENSMUSG00000093292.1 ENSMUSG00000093292 ENSMUST00000175551 Mir5118 miRNA Interval_145880 chr7 41338468 41338869 + 0 NA exon (ENSMUSG00000082080.3, exon 1 of 1) processed_pseudogene-exon (ENSMUSG00000082080.3, exon 1 of 1) 3284 ENSMUSG00000082080.3 ENSMUSG00000082080 ENSMUST00000117587 Gm9246 processed_pseudogene Interval_94034 chr2 81343633 81343841 + 0 NA Intergenic Intergenic 199605 ENSMUSG00000088194.1 ENSMUSG00000088194 ENSMUST00000157569 Gm23900 rRNA Interval_139343 chr6 99168815 99169049 + 0 NA intron (ENSMUSG00000030067.17, intron 4 of 4) protein_coding-intron (ENSMUSG00000030067.17, intron 2 of 3) -92875 ENSMUSG00000105902.1 ENSMUSG00000105902 ENSMUST00000200105 Gm49348 miRNA Interval_78734 chr18 19861842 19862737 + 0 NA Intergenic Intergenic 5404 ENSMUSG00000088417.1 ENSMUSG00000088417 ENSMUST00000157792 Gm24238 rRNA Interval_20668 chr10 120134516 120134975 + 0 NA Intergenic Intergenic -21880 ENSMUSG00000020228.11 ENSMUSG00000020228 ENSMUST00000154501 Helb protein_coding Interval_111248 chr4 15957649 15958923 + 0 NA intron (ENSMUSG00000028224.14, intron 1 of 10) protein_coding-intron (ENSMUSG00000028224.14, intron 1 of 15) 319 ENSMUSG00000028224.14 ENSMUSG00000028224 ENSMUST00000149069 Nbn protein_coding Interval_74019 chr17 46084102 46084442 + 0 NA promoter-TSS (ENSMUSG00000117287.1) lincRNA-promoter-TSS (ENSMUSG00000117287.1) -6 ENSMUSG00000117287.1 ENSMUSG00000117287 ENSMUST00000233284 Gm36200 lincRNA Interval_170447 chr9 108037223 108037546 + 0 NA intron (ENSMUSG00000032594.11, intron 2 of 4) protein_coding-intron (ENSMUSG00000032594.11, intron 3 of 5) -11885 ENSMUSG00000070284.10 ENSMUSG00000070284 ENSMUST00000145330 Gmppb protein_coding Interval_76025 chr17 74455242 74457011 + 0 NA intron (ENSMUSG00000039193.9, intron 1 of 8) protein_coding-intron (ENSMUSG00000039193.9, intron 1 of 8) -7920 ENSMUSG00000039193.9 ENSMUSG00000039193 ENSMUST00000234086 Nlrc4 protein_coding Interval_155265 chr8 29218670 29220000 + 0 NA promoter-TSS (ENSMUSG00000063626.6) protein_coding-promoter-TSS (ENSMUSG00000063626.6) 92 ENSMUSG00000063626.6 ENSMUSG00000063626 ENSMUST00000209401 Unc5d protein_coding Interval_144635 chr7 27265846 27267473 + 0 NA intron (ENSMUSG00000063160.12, intron 2 of 7) protein_coding-intron (ENSMUSG00000063160.12, intron 4 of 9) 5733 ENSMUSG00000083622.1 ENSMUSG00000083622 ENSMUST00000122093 Gm15570 processed_pseudogene Interval_149207 chr7 96277706 96278970 + 0 NA intron (ENSMUSG00000048078.16, intron 1 of 32) protein_coding-intron (ENSMUSG00000048078.16, intron 1 of 32) -27329 ENSMUSG00000099030.1 ENSMUSG00000099030 ENSMUST00000184738 Mir6394 miRNA Interval_83594 chr18 90411834 90412658 + 0 NA Intergenic Intergenic 69760 ENSMUSG00000118372.1 ENSMUSG00000118372 ENSMUST00000236347 Gm50434 processed_pseudogene Interval_27952 chr11 71429755 71429961 + 0 NA TTS (ENSMUSG00000085230.1) lincRNA-TTS (ENSMUSG00000085230.1) 6322 ENSMUSG00000085230.1 ENSMUSG00000085230 ENSMUST00000152249 Gm16013 lincRNA Interval_112758 chr4 44648559 44648812 + 0 NA intron (ENSMUSG00000014030.15, intron 4 of 8) protein_coding-intron (ENSMUSG00000014030.15, intron 5 of 9) -2962 ENSMUSG00000014030.15 ENSMUSG00000014030 ENSMUST00000191036 Pax5 protein_coding Interval_52992 chr14 53035990 53036285 + 0 NA intron (ENSMUSG00000104598.1, intron 1 of 2) antisense-intron (ENSMUSG00000104598.1, intron 1 of 2) 3289 ENSMUSG00000095643.2 ENSMUSG00000095643 ENSMUST00000179512 Trav13d-3 TR_V_gene Interval_168103 chr9 76518717 76519213 + 0 NA intron (ENSMUSG00000032358.12, intron 2 of 4) protein_coding-intron (ENSMUSG00000032358.12, intron 1 of 3) 48151 ENSMUSG00000032358.12 ENSMUSG00000032358 ENSMUST00000098546 Fam83b protein_coding Interval_163638 chr9 22886528 22886833 + 0 NA intron (ENSMUSG00000035919.16, intron 21 of 22) protein_coding-intron (ENSMUSG00000035919.16, intron 20 of 21) -113845 ENSMUSG00000098940.1 ENSMUSG00000098940 ENSMUST00000184937 Gm27639 snRNA Interval_117440 chr4 123690231 123690968 + 0 NA Intergenic Intergenic 19428 ENSMUSG00000081170.1 ENSMUSG00000081170 ENSMUST00000120626 Gm12922 processed_pseudogene Interval_117867 chr4 126741553 126741853 + 0 NA Intergenic Intergenic -5463 ENSMUSG00000042477.7 ENSMUSG00000042477 ENSMUST00000048194 Tfap2e protein_coding Interval_124364 chr5 44710115 44711106 + 0 NA intron (ENSMUSG00000039706.11, intron 1 of 8) protein_coding-intron (ENSMUSG00000039706.11, intron 1 of 7) -3720 ENSMUSG00000105224.1 ENSMUSG00000105224 ENSMUST00000196016 Gm3364 sense_intronic Interval_120660 chr4 149954303 149955690 + 0 NA promoter-TSS (ENSMUSG00000039911.13) protein_coding-promoter-TSS (ENSMUSG00000039911.13) -32525 ENSMUSG00000039911.13 ENSMUSG00000039911 ENSMUST00000135896 Spsb1 protein_coding Interval_44829 chr13 48958704 48959291 + 0 NA intron (ENSMUSG00000038014.7, intron 1 of 17) protein_coding-intron (ENSMUSG00000038014.7, intron 1 of 17) 9020 ENSMUSG00000038014.7 ENSMUSG00000038014 ENSMUST00000060805 Fam120a protein_coding Interval_3322 chr1 56901698 56901924 + 0 NA intron (ENSMUSG00000038331.15, intron 2 of 9) protein_coding-intron (ENSMUSG00000038331.15, intron 2 of 9) 68061 ENSMUSG00000038331.15 ENSMUSG00000038331 ENSMUST00000177282 Satb2 protein_coding Interval_95867 chr2 117444521 117445184 + 0 NA Intergenic Intergenic -27155 ENSMUSG00000085681.1 ENSMUSG00000085681 ENSMUST00000138372 Gm13982 lincRNA Interval_163900 chr9 28044328 28044677 + 0 NA intron (ENSMUSG00000062257.13, intron 1 of 7) protein_coding-intron (ENSMUSG00000062257.13, intron 1 of 7) -153438 ENSMUSG00000087531.7 ENSMUSG00000087531 ENSMUST00000139851 Gm15606 sense_intronic Interval_69559 chr16 94235883 94236105 + 0 NA intron (ENSMUSG00000040820.16, intron 5 of 10) protein_coding-intron (ENSMUSG00000040820.16, intron 4 of 9) 7353 ENSMUSG00000114993.1 ENSMUSG00000114993 ENSMUST00000227202 Gm6363 processed_pseudogene Interval_174586 chrX 159510103 159511457 + 0 NA Intergenic Intergenic 51643 ENSMUSG00000041020.14 ENSMUSG00000041020 ENSMUST00000156172 Map7d2 protein_coding Interval_38925 chr12 83863039 83863245 + 0 NA intron (ENSMUSG00000021224.15, intron 2 of 8) protein_coding-intron (ENSMUSG00000021224.15, intron 2 of 12) 12740 ENSMUSG00000113423.1 ENSMUSG00000113423 ENSMUST00000220790 Gm3791 processed_pseudogene Interval_84379 chr19 10486202 10486886 + 0 NA Intergenic Intergenic -3616 ENSMUSG00000035179.4 ENSMUSG00000035179 ENSMUST00000236733 Ppp1r32 protein_coding Interval_11396 chr1 181576704 181577052 + 0 NA intron (ENSMUSG00000047369.17, intron 1 of 83) protein_coding-intron (ENSMUSG00000047369.17, intron 1 of 83) -5075 ENSMUSG00000047369.17 ENSMUSG00000047369 ENSMUST00000195808 Dnah14 protein_coding Interval_75020 chr17 60965795 60966006 + 0 NA Intergenic Intergenic -7022 ENSMUSG00000117036.1 ENSMUSG00000117036 ENSMUST00000233618 Gm33890 lincRNA Interval_30666 chr11 95770644 95771955 + 0 NA exon (ENSMUSG00000075595.9, exon 6 of 6) protein_coding-exon (ENSMUSG00000075595.9, exon 6 of 6) 9808 ENSMUSG00000082981.1 ENSMUSG00000082981 ENSMUST00000120170 Polr2k-ps processed_pseudogene Interval_13833 chr10 23500677 23501547 + 0 NA Intergenic Intergenic 108319 ENSMUSG00000111894.1 ENSMUSG00000111894 ENSMUST00000219823 Gm47843 lincRNA Interval_109251 chr3 138332284 138333251 + 0 NA Intergenic Intergenic -9205 ENSMUSG00000074206.7 ENSMUSG00000074206 ENSMUST00000090166 Adh6b protein_coding Interval_69957 chr17 3497626 3498695 + 0 NA intron (ENSMUSG00000023800.15, intron 1 of 9) protein_coding-intron (ENSMUSG00000023800.15, intron 15 of 26) 15952 ENSMUSG00000023800.15 ENSMUSG00000023800 ENSMUST00000226434 Tiam2 protein_coding Interval_147052 chr7 60155181 60156170 + 0 NA promoter-TSS (ENSMUSG00000047370.5) processed_pseudogene-promoter-TSS (ENSMUSG00000047370.5) 66 ENSMUSG00000047370.5 ENSMUSG00000047370 ENSMUST00000057611 Gm7367 processed_pseudogene Interval_79099 chr18 24521827 24522475 + 0 NA intron (ENSMUSG00000040446.4, intron 1 of 5) protein_coding-intron (ENSMUSG00000040446.4, intron 1 of 6) 7943 ENSMUSG00000040446.4 ENSMUSG00000040446 ENSMUST00000234403 Rprd1a protein_coding Interval_70804 chr17 14817487 14818680 + 0 NA TTS (ENSMUSG00000046991.12) protein_coding-TTS (ENSMUSG00000046991.12) -26079 ENSMUSG00000089053.1 ENSMUSG00000089053 ENSMUST00000158428 Gm23352 snRNA Interval_69742 chr16 95974036 95974628 + 0 NA Intergenic Intergenic 16558 ENSMUSG00000022913.16 ENSMUSG00000022913 ENSMUST00000233134 Psmg1 protein_coding Interval_143476 chr7 7136294 7137174 + 0 NA promoter-TSS (ENSMUSG00000063535.7) protein_coding-promoter-TSS (ENSMUSG00000063535.7) -10 ENSMUSG00000063535.7 ENSMUSG00000063535 ENSMUST00000032622 Zfp773 protein_coding Interval_6827 chr1 119915137 119915486 + 0 NA Intergenic Intergenic -2103 ENSMUSG00000036975.5 ENSMUSG00000036975 ENSMUST00000037906 Tmem177 protein_coding Interval_27556 chr11 68673893 68675267 + 0 NA Intergenic Intergenic -17574 ENSMUSG00000020900.15 ENSMUSG00000020900 ENSMUST00000139059 Myh10 protein_coding Interval_141494 chr6 128623799 128624246 + 0 NA promoter-TSS (ENSMUSG00000030361.16) protein_coding-promoter-TSS (ENSMUSG00000030361.16) -1109 ENSMUSG00000030361.16 ENSMUSG00000030361 ENSMUST00000203150 Klrb1a protein_coding Interval_57684 chr15 15245668 15245889 + 0 NA Intergenic Intergenic 79417 ENSMUSG00000114972.1 ENSMUSG00000114972 ENSMUST00000226279 Gm49119 processed_pseudogene Interval_62497 chr15 93502556 93503984 + 0 NA exon (ENSMUSG00000036158.12, exon 7 of 8) protein_coding-exon (ENSMUSG00000036158.12, exon 7 of 8) 16253 ENSMUSG00000036158.12 ENSMUSG00000036158 ENSMUST00000048982 Prickle1 protein_coding Interval_90049 chr2 27523905 27524172 + 0 NA intron (ENSMUSG00000026917.15, intron 4 of 11) protein_coding-intron (ENSMUSG00000026917.15, intron 7 of 13) 8881 ENSMUSG00000026917.15 ENSMUSG00000026917 ENSMUST00000125088 Wdr5 protein_coding Interval_62600 chr15 95243394 95243598 + 0 NA intron (ENSMUSG00000022454.17, intron 15 of 20) protein_coding-intron (ENSMUSG00000022454.17, intron 16 of 20) -81102 ENSMUSG00000100603.6 ENSMUSG00000100603 ENSMUST00000185302 1700129L04Rik sense_intronic Interval_64295 chr16 10304556 10305597 + 0 NA intron (ENSMUSG00000022505.9, intron 1 of 4) protein_coding-intron (ENSMUSG00000022505.9, intron 1 of 4) 8795 ENSMUSG00000022505.9 ENSMUSG00000022505 ENSMUST00000230141 Emp2 protein_coding Interval_122425 chr5 22520745 22521064 + 0 NA exon (ENSMUSG00000029012.11, exon 1 of 1) protein_coding-exon (ENSMUSG00000029012.11, exon 1 of 1) 1762 ENSMUSG00000029012.11 ENSMUSG00000029012 ENSMUST00000138248 Orc5 protein_coding Interval_76167 chr17 75837527 75837711 + 0 NA Intergenic Intergenic 3782 ENSMUSG00000117587.1 ENSMUSG00000117587 ENSMUST00000235034 Gm50099 processed_pseudogene Interval_34391 chr12 3823131 3823869 + 0 NA intron (ENSMUSG00000020661.15, intron 1 of 22) protein_coding-intron (ENSMUSG00000020661.15, intron 1 of 22) 16340 ENSMUSG00000020661.15 ENSMUSG00000020661 ENSMUST00000172913 Dnmt3a protein_coding Interval_69448 chr16 93511675 93512458 + 0 NA Intergenic Intergenic -20322 ENSMUSG00000116576.1 ENSMUSG00000116576 ENSMUST00000231728 Gm49725 lincRNA Interval_78203 chr18 10101028 10101302 + 0 NA intron (ENSMUSG00000024290.9, intron 15 of 32) protein_coding-intron (ENSMUSG00000024290.9, intron 16 of 32) 11213 ENSMUSG00000024290.9 ENSMUSG00000024290 ENSMUST00000235075 Rock1 protein_coding Interval_7450 chr1 131438234 131438512 + 0 NA intron (ENSMUSG00000026425.15, intron 2 of 4) protein_coding-intron (ENSMUSG00000026425.15, intron 2 of 22) 9322 ENSMUSG00000099959.1 ENSMUSG00000099959 ENSMUST00000190146 Gm29487 processed_pseudogene Interval_154310 chr8 14295835 14297537 + 0 NA intron (ENSMUSG00000047495.15, intron 2 of 14) protein_coding-intron (ENSMUSG00000047495.15, intron 2 of 14) -23375 ENSMUSG00000088311.1 ENSMUSG00000088311 ENSMUST00000157686 Gm26184 snoRNA Interval_30268 chr11 92468692 92468905 + 0 NA Intergenic Intergenic 302175 ENSMUSG00000081363.2 ENSMUSG00000081363 ENSMUST00000118237 Gm11500 processed_pseudogene Interval_114662 chr4 83567258 83568475 + 0 NA intron (ENSMUSG00000052407.17, intron 6 of 25) protein_coding-intron (ENSMUSG00000052407.17, intron 6 of 25) -29437 ENSMUSG00000098217.1 ENSMUSG00000098217 ENSMUST00000182160 Gm27046 processed_pseudogene Interval_108091 chr3 121451590 121451845 + 0 NA intron (ENSMUSG00000053931.11, intron 3 of 5) protein_coding-intron (ENSMUSG00000053931.11, intron 4 of 6) -5396 ENSMUSG00000053931.11 ENSMUSG00000053931 ENSMUST00000199499 Cnn3 protein_coding Interval_150960 chr7 116754335 116755090 + 0 NA Intergenic Intergenic 49787 ENSMUSG00000108740.1 ENSMUSG00000108740 ENSMUST00000206542 Gm6008 processed_pseudogene Interval_5757 chr1 91523727 91525235 + 0 NA intron (ENSMUSG00000034292.13, intron 14 of 15) protein_coding-intron (ENSMUSG00000034292.13, intron 13 of 14) -16251 ENSMUSG00000026311.16 ENSMUSG00000026311 ENSMUST00000188879 Asb1 protein_coding Interval_7522 chr1 131981245 131981988 + 0 NA exon (ENSMUSG00000026435.15, exon 5 of 5) protein_coding-exon (ENSMUSG00000026435.15, exon 5 of 5) 4897 ENSMUSG00000026435.15 ENSMUSG00000026435 ENSMUST00000185387 Slc45a3 protein_coding Interval_61223 chr15 80080831 80082002 + 0 NA promoter-TSS (ENSMUSG00000060036.14) protein_coding-promoter-TSS (ENSMUSG00000060036.14) -935 ENSMUSG00000060036.14 ENSMUSG00000060036 ENSMUST00000185928 Rpl3 protein_coding Interval_88931 chr2 13094839 13095188 + 0 NA intron (ENSMUSG00000026727.10, intron 2 of 2) protein_coding-intron (ENSMUSG00000026727.10, intron 8 of 8) 23422 ENSMUSG00000103360.1 ENSMUSG00000103360 ENSMUST00000194601 Gm38156 TEC Interval_141089 chr6 124903434 124905031 + 0 NA TTS (ENSMUSG00000030124.2) protein_coding-TTS (ENSMUSG00000030124.2) 5819 ENSMUSG00000030124.2 ENSMUSG00000030124 ENSMUST00000139571 Lag3 protein_coding Interval_171891 chr9 122144424 122145068 + 0 NA intron (ENSMUSG00000038145.17, intron 5 of 8) protein_coding-intron (ENSMUSG00000038145.17, intron 3 of 6) 2297 ENSMUSG00000111434.1 ENSMUSG00000111434 ENSMUST00000213905 Gm47121 sense_intronic Interval_49748 chr13 114456185 114456630 + 0 NA promoter-TSS (ENSMUSG00000021765.9) protein_coding-promoter-TSS (ENSMUSG00000021765.9) -171 ENSMUSG00000021765.9 ENSMUSG00000021765 ENSMUST00000225068 Fst protein_coding Interval_122906 chr5 27201100 27201803 + 0 NA intron (ENSMUSG00000061576.15, intron 1 of 25) protein_coding-intron (ENSMUSG00000061576.15, intron 1 of 25) 5496 ENSMUSG00000105946.1 ENSMUSG00000105946 ENSMUST00000199729 Gm43776 TEC Interval_100511 chr2 169761619 169762947 + 0 NA intron (ENSMUSG00000047907.11, intron 1 of 2) protein_coding-intron (ENSMUSG00000047907.11, intron 1 of 1) -122610 ENSMUSG00000047907.11 ENSMUSG00000047907 ENSMUST00000140699 Tshz2 protein_coding Interval_50953 chr14 21065876 21066055 + 0 NA intron (ENSMUSG00000039197.10, intron 1 of 4) protein_coding-intron (ENSMUSG00000039197.10, intron 1 of 10) 13348 ENSMUSG00000039197.10 ENSMUSG00000039197 ENSMUST00000224974 Adk protein_coding Interval_6766 chr1 119347658 119349466 + 0 NA intron (ENSMUSG00000101179.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000101179.1, intron 1 of 2) 19362 ENSMUSG00000101179.1 ENSMUSG00000101179 ENSMUST00000186504 Gm29455 lincRNA Interval_135362 chr6 38618399 38618680 + 0 NA Intergenic Intergenic 18694 ENSMUSG00000071537.6 ENSMUSG00000071537 ENSMUST00000201345 Klrg2 protein_coding Interval_89411 chr2 20535623 20536080 + 0 NA intron (ENSMUSG00000036617.17, intron 3 of 3) protein_coding-intron (ENSMUSG00000036617.17, intron 3 of 18) -23953 ENSMUSG00000098575.1 ENSMUSG00000098575 ENSMUST00000183963 Gm27446 misc_RNA Interval_143226 chr7 4619956 4620432 + 0 NA Intergenic Intergenic -6784 ENSMUSG00000108320.1 ENSMUSG00000108320 ENSMUST00000206485 Gm44877 antisense Interval_22285 chr11 8541883 8542418 + 0 NA intron (ENSMUSG00000020422.14, intron 8 of 30) protein_coding-intron (ENSMUSG00000020422.14, intron 8 of 30) 122531 ENSMUSG00000020422.14 ENSMUSG00000020422 ENSMUST00000134823 Tns3 protein_coding Interval_157828 chr8 74635534 74635825 + 0 NA intron (ENSMUSG00000079011.9, intron 6 of 9) lincRNA-intron (ENSMUSG00000079011.9, intron 6 of 9) 198258 ENSMUSG00000079011.9 ENSMUSG00000079011 ENSMUST00000137218 Gm11033 lincRNA Interval_144428 chr7 25097281 25097748 + 0 NA promoter-TSS (ENSMUSG00000098441.1) miRNA-promoter-TSS (ENSMUSG00000098441.1) -339 ENSMUSG00000098441.1 ENSMUSG00000098441 ENSMUST00000184150 Mir6537 miRNA Interval_55050 chr14 77509342 77510384 + 0 NA intron (ENSMUSG00000022012.9, intron 6 of 6) protein_coding-intron (ENSMUSG00000022012.9, intron 7 of 18) -8423 ENSMUSG00000067973.11 ENSMUSG00000067973 ENSMUST00000163416 Gm6994 antisense Interval_158225 chr8 80104198 80104766 + 0 NA Intergenic Intergenic 7604 ENSMUSG00000082491.1 ENSMUSG00000082491 ENSMUST00000119768 Gm5909 processed_pseudogene Interval_11761 chr1 185262418 185263185 + 0 NA promoter-TSS (ENSMUSG00000039318.12) protein_coding-promoter-TSS (ENSMUSG00000039318.12) -14912 ENSMUSG00000103613.1 ENSMUSG00000103613 ENSMUST00000193245 Gm34882 antisense Interval_160865 chr8 114216589 114216809 + 0 NA intron (ENSMUSG00000046844.6, intron 1 of 1) protein_coding-intron (ENSMUSG00000046844.6, intron 1 of 8) 11065 ENSMUSG00000046844.6 ENSMUSG00000046844 ENSMUST00000124143 Vat1l protein_coding Interval_7036 chr1 123144337 123145072 + 0 NA Intergenic Intergenic 4513 ENSMUSG00000100762.1 ENSMUSG00000100762 ENSMUST00000189712 Gm8403 processed_pseudogene Interval_52614 chr14 47940538 47940816 + 0 NA intron (ENSMUSG00000115609.1, intron 2 of 3) lincRNA-intron (ENSMUSG00000115609.1, intron 2 of 3) -19342 ENSMUSG00000114989.1 ENSMUSG00000114989 ENSMUST00000228393 Gm49303 lincRNA Interval_82796 chr18 77098566 77099450 + 0 NA intron (ENSMUSG00000025423.16, intron 2 of 14) protein_coding-intron (ENSMUSG00000025423.16, intron 2 of 12) 33763 ENSMUSG00000025423.16 ENSMUSG00000025423 ENSMUST00000168882 Pias2 protein_coding Interval_81122 chr18 54341218 54341950 + 0 NA Intergenic Intergenic -80711 ENSMUSG00000096982.2 ENSMUSG00000096982 ENSMUST00000181269 Redrum lincRNA Interval_23014 chr11 18937381 18937878 + 0 NA intron (ENSMUSG00000020160.18, intron 6 of 9) protein_coding-intron (ENSMUSG00000020160.18, intron 8 of 12) -47789 ENSMUSG00000104244.1 ENSMUSG00000104244 ENSMUST00000195805 2900018N21Rik TEC Interval_165176 chr9 45016544 45017119 + 0 NA Intergenic Intergenic -7209 ENSMUSG00000032093.7 ENSMUSG00000032093 ENSMUST00000217486 Cd3e protein_coding Interval_18121 chr10 82809374 82810092 + 0 NA Intergenic Intergenic -2390 ENSMUSG00000056821.13 ENSMUSG00000056821 ENSMUST00000076984 1700028I16Rik lincRNA Interval_162511 chr9 3456822 3457158 + 0 NA intron (ENSMUSG00000025898.6, intron 14 of 17) protein_coding-intron (ENSMUSG00000025898.6, intron 14 of 17) 40473 ENSMUSG00000110660.1 ENSMUSG00000110660 ENSMUST00000211968 Gm5362 processed_pseudogene Interval_96524 chr2 125276164 125276426 + 0 NA intron (ENSMUSG00000085797.1, intron 1 of 1) antisense-intron (ENSMUSG00000085797.1, intron 1 of 1) 1731 ENSMUSG00000085797.1 ENSMUSG00000085797 ENSMUST00000146845 A530010F05Rik antisense Interval_86570 chr19 41766217 41767444 + 0 NA exon (ENSMUSG00000025154.15, exon 12 of 12) protein_coding-exon (ENSMUSG00000025154.15, exon 12 of 12) 22026 ENSMUSG00000088220.1 ENSMUSG00000088220 ENSMUST00000157595 Gm22601 misc_RNA Interval_4778 chr1 78567798 78568469 + 0 NA Intergenic Intergenic 41375 ENSMUSG00000099364.1 ENSMUSG00000099364 ENSMUST00000190504 5730419F03Rik lincRNA Interval_49598 chr13 113357002 113357296 + 0 NA intron (ENSMUSG00000021763.17, intron 8 of 9) protein_coding-intron (ENSMUSG00000021763.17, intron 3 of 5) -45939 ENSMUSG00000088814.1 ENSMUSG00000088814 ENSMUST00000158189 Gm22385 rRNA Interval_130264 chr5 125283639 125284454 + 0 NA exon (ENSMUSG00000037936.15, exon 1 of 3) protein_coding-exon (ENSMUSG00000037936.15, exon 1 of 3) -11231 ENSMUSG00000105039.1 ENSMUSG00000105039 ENSMUST00000198586 Gm32585 lincRNA Interval_173107 chrX 71816058 71817337 + 0 NA promoter-TSS (ENSMUSG00000073131.12) protein_coding-promoter-TSS (ENSMUSG00000073131.12) -93 ENSMUSG00000073131.12 ENSMUSG00000073131 ENSMUST00000138979 Vma21 protein_coding Interval_79941 chr18 36111555 36111785 + 0 NA intron (ENSMUSG00000060275.14, intron 1 of 9) protein_coding-intron (ENSMUSG00000060275.14, intron 2 of 7) 6019 ENSMUSG00000117852.1 ENSMUSG00000117852 ENSMUST00000235667 4930471G03Rik antisense Interval_47383 chr13 82649304 82649526 + 0 NA Intergenic Intergenic 48918 ENSMUSG00000106655.1 ENSMUSG00000106655 ENSMUST00000198795 Mir3961 miRNA Interval_40380 chr12 104531605 104531900 + 0 NA Intergenic Intergenic 11784 ENSMUSG00000112954.1 ENSMUSG00000112954 ENSMUST00000222329 Gm49732 lincRNA Interval_171552 chr9 119156013 119157244 + 0 NA exon (ENSMUSG00000010651.4, exon 2 of 12) protein_coding-exon (ENSMUSG00000010651.4, exon 2 of 12) -2533 ENSMUSG00000074029.2 ENSMUSG00000074029 ENSMUST00000093527 Gm47289 lincRNA Interval_36238 chr12 40160679 40160956 + 0 NA Intergenic Intergenic -26634 ENSMUSG00000002565.16 ENSMUSG00000002565 ENSMUST00000002640 Scin protein_coding Interval_58409 chr15 34261765 34262227 + 0 NA intron (ENSMUSG00000022257.4, intron 2 of 6) protein_coding-intron (ENSMUSG00000022257.4, intron 2 of 6) 7833 ENSMUSG00000115808.1 ENSMUSG00000115808 ENSMUST00000226939 Gm18949 processed_pseudogene Interval_81004 chr18 52613753 52614190 + 0 NA Intergenic Intergenic -1986 ENSMUSG00000046886.6 ENSMUSG00000046886 ENSMUST00000209270 Zfp474 protein_coding Interval_6255 chr1 104837976 104838547 + 0 NA intron (ENSMUSG00000050840.8, intron 1 of 11) protein_coding-intron (ENSMUSG00000050840.8, intron 1 of 11) 42774 ENSMUSG00000084704.1 ENSMUSG00000084704 ENSMUST00000122755 n-R5s216 rRNA Interval_65738 chr16 26447867 26448475 + 0 NA Intergenic Intergenic -14964 ENSMUSG00000038148.13 ENSMUSG00000038148 ENSMUST00000115302 Cldn16 protein_coding Interval_18640 chr10 88757672 88757960 + 0 NA intron (ENSMUSG00000004356.8, intron 50 of 61) protein_coding-intron (ENSMUSG00000004356.8, intron 50 of 61) -26715 ENSMUSG00000069540.4 ENSMUSG00000069540 ENSMUST00000092231 Gm4925 transcribed_processed_pseudogene Interval_153839 chr8 9493161 9493681 + 0 NA intron (ENSMUSG00000079157.4, intron 3 of 3) protein_coding-intron (ENSMUSG00000079157.4, intron 1 of 2) 34329 ENSMUSG00000109551.1 ENSMUSG00000109551 ENSMUST00000208065 4930435N07Rik TEC Interval_105054 chr3 80498413 80498666 + 0 NA Intergenic Intergenic -98873 ENSMUSG00000087123.1 ENSMUSG00000087123 ENSMUST00000145087 Gm6706 processed_pseudogene Interval_124158 chr5 38720999 38721534 + 0 NA intron (ENSMUSG00000039315.15, intron 15 of 18) protein_coding-intron (ENSMUSG00000039315.15, intron 15 of 18) -14718 ENSMUSG00000079528.9 ENSMUSG00000079528 ENSMUST00000177682 Clnkos antisense Interval_62000 chr15 85800955 85801715 + 0 NA exon (ENSMUSG00000022383.13, exon 8 of 8) protein_coding-exon (ENSMUSG00000022383.13, exon 8 of 8) 10324 ENSMUSG00000064284.12 ENSMUSG00000064284 ENSMUST00000154814 Cdpf1 protein_coding Interval_108526 chr3 127968497 127969133 + 0 NA Intergenic Intergenic -1894 ENSMUSG00000106437.1 ENSMUSG00000106437 ENSMUST00000199122 Gm35667 lincRNA Interval_32714 chr11 109914100 109914572 + 0 NA Intergenic Intergenic -21980 ENSMUSG00000085629.1 ENSMUSG00000085629 ENSMUST00000149226 Gm11697 antisense Interval_209 KQ030491.1 23986 24526 + 0 NA NA NA NA NA Interval_52842 chr14 51011656 51011883 + 0 NA Intergenic Intergenic 4018 ENSMUSG00000021872.8 ENSMUSG00000021872 ENSMUST00000022424 Rnase10 protein_coding Interval_7734 chr1 133339194 133339534 + 0 NA Intergenic Intergenic 12152 ENSMUSG00000116158.1 ENSMUSG00000116158 ENSMUST00000178033 Kiss1 protein_coding Interval_21732 chr11 4005139 4005674 + 0 NA Intergenic Intergenic 2949 ENSMUSG00000084170.1 ENSMUSG00000084170 ENSMUST00000121403 Gm11954 processed_pseudogene Interval_141002 chr6 124262342 124263138 + 0 NA Intergenic Intergenic 11209 ENSMUSG00000107921.1 ENSMUSG00000107921 ENSMUST00000204315 Gm6423 processed_pseudogene Interval_135857 chr6 47960091 47960322 + 0 NA intron (ENSMUSG00000045466.18, intron 3 of 4) protein_coding-intron (ENSMUSG00000045466.18, intron 3 of 4) 6761 ENSMUSG00000045466.18 ENSMUSG00000045466 ENSMUST00000140719 Zfp956 protein_coding Interval_83605 chr18 90530667 90530878 + 0 NA promoter-TSS (ENSMUSG00000117747.1) transcribed_processed_pseudogene-promoter-TSS (ENSMUSG00000117747.1) -164 ENSMUSG00000117747.1 ENSMUSG00000117747 ENSMUST00000236589 Gm50438 transcribed_processed_pseudogene Interval_112893 chr4 45852196 45852402 + 0 NA intron (ENSMUSG00000028327.14, intron 1 of 18) protein_coding-intron (ENSMUSG00000028327.14, intron 1 of 17) -21912 ENSMUSG00000028327.14 ENSMUSG00000028327 ENSMUST00000165478 Stra6l protein_coding Interval_131853 chr5 140379205 140380628 + 0 NA intron (ENSMUSG00000029560.12, intron 1 of 10) protein_coding-intron (ENSMUSG00000029560.12, intron 1 of 10) -12806 ENSMUSG00000029560.12 ENSMUSG00000029560 ENSMUST00000196020 Snx8 protein_coding Interval_170158 chr9 105666034 105666422 + 0 NA intron (ENSMUSG00000032571.14, intron 9 of 19) protein_coding-intron (ENSMUSG00000032571.14, intron 9 of 19) 7323 ENSMUSG00000084659.1 ENSMUSG00000084659 ENSMUST00000122710 Gm22720 snRNA Interval_39868 chr12 99221596 99222715 + 0 NA intron (ENSMUSG00000033713.12, intron 1 of 3) protein_coding-intron (ENSMUSG00000033713.12, intron 4 of 5) -23516 ENSMUSG00000093419.1 ENSMUSG00000093419 ENSMUST00000177490 Gm19898 processed_pseudogene Interval_6156 chr1 98179073 98180000 + 0 NA intron (ENSMUSG00000100711.1, intron 2 of 3) lincRNA-intron (ENSMUSG00000100711.1, intron 2 of 3) 5888 ENSMUSG00000100711.1 ENSMUSG00000100711 ENSMUST00000189232 Gm29461 lincRNA Interval_28075 chr11 72656263 72656477 + 0 NA intron (ENSMUSG00000020794.13, intron 2 of 6) protein_coding-intron (ENSMUSG00000020794.13, intron 1 of 5) 7445 ENSMUSG00000092725.1 ENSMUSG00000092725 ENSMUST00000174984 Gm25678 miRNA Interval_66693 chr16 36220862 36221108 + 0 NA promoter-TSS (ENSMUSG00000095620.7) protein_coding-promoter-TSS (ENSMUSG00000095620.7) -577 ENSMUSG00000095620.7 ENSMUSG00000095620 ENSMUST00000063539 Csta2 protein_coding Interval_111543 chr4 22740432 22740779 + 0 NA Intergenic Intergenic -6526 ENSMUSG00000088809.1 ENSMUSG00000088809 ENSMUST00000158184 Gm24078 miRNA Interval_60929 chr15 77940441 77941203 + 0 NA TTS (ENSMUSG00000016552.13) protein_coding-TTS (ENSMUSG00000016552.13) 5066 ENSMUSG00000016552.13 ENSMUSG00000016552 ENSMUST00000129045 Foxred2 protein_coding Interval_2592 chr1 41127224 41127428 + 0 NA Intergenic Intergenic 53926 ENSMUSG00000104072.1 ENSMUSG00000104072 ENSMUST00000194002 4930448I06Rik lincRNA Interval_124552 chr5 50395260 50395905 + 0 NA Intergenic Intergenic -105096 ENSMUSG00000095857.1 ENSMUSG00000095857 ENSMUST00000179376 Gm22618 snRNA Interval_17401 chr10 76374241 76375211 + 0 NA intron (ENSMUSG00000001151.10, intron 21 of 29) protein_coding-intron (ENSMUSG00000001151.10, intron 33 of 41) -14289 ENSMUSG00000101695.1 ENSMUSG00000101695 ENSMUST00000187079 1700094J05Rik antisense Interval_52750 chr14 49356278 49356855 + 0 NA intron (ENSMUSG00000021852.14, intron 1 of 2) protein_coding-intron (ENSMUSG00000021852.14, intron 1 of 7) 56730 ENSMUSG00000115096.1 ENSMUSG00000115096 ENSMUST00000228016 Gm48940 antisense Interval_167494 chr9 70018766 70019224 + 0 NA promoter-TSS (ENSMUSG00000033543.17) protein_coding-promoter-TSS (ENSMUSG00000033543.17) -53 ENSMUSG00000033543.17 ENSMUSG00000033543 ENSMUST00000148889 Gtf2a2 protein_coding Interval_130485 chr5 128258330 128258645 + 0 NA intron (ENSMUSG00000034310.8, intron 2 of 8) protein_coding-intron (ENSMUSG00000034310.8, intron 2 of 8) -17148 ENSMUSG00000104581.1 ENSMUSG00000104581 ENSMUST00000197363 Gm42497 TEC Interval_28092 chr11 72761934 72762372 + 0 NA intron (ENSMUSG00000020790.14, intron 23 of 24) protein_coding-intron (ENSMUSG00000020790.14, intron 21 of 22) 33688 ENSMUSG00000057778.14 ENSMUSG00000057778 ENSMUST00000169476 Cyb5d2 protein_coding Interval_162845 chr9 10308226 10309386 + 0 NA intron (ENSMUSG00000039488.15, intron 3 of 24) protein_coding-intron (ENSMUSG00000039488.15, intron 1 of 22) -13650 ENSMUSG00000096815.1 ENSMUSG00000096815 ENSMUST00000179931 Gm25086 miRNA Interval_146856 chr7 53531372 53531573 + 0 NA Intergenic Intergenic 360417 ENSMUSG00000099176.1 ENSMUSG00000099176 ENSMUST00000184140 Mir6238 miRNA Interval_24371 chr11 32718015 32719085 + 0 NA intron (ENSMUSG00000020271.17, intron 4 of 4) protein_coding-intron (ENSMUSG00000020271.17, intron 4 of 13) 57089 ENSMUSG00000098054.1 ENSMUSG00000098054 ENSMUST00000182196 Gm8192 processed_pseudogene Interval_116087 chr4 107546759 107547123 + 0 NA intron (ENSMUSG00000034762.9, intron 1 of 9) protein_coding-intron (ENSMUSG00000034762.9, intron 2 of 10) -34262 ENSMUSG00000034762.9 ENSMUSG00000034762 ENSMUST00000125573 Glis1 protein_coding Interval_3096 chr1 53272478 53272774 + 0 NA intron (ENSMUSG00000026098.13, intron 3 of 4) protein_coding-intron (ENSMUSG00000026098.13, intron 3 of 12) 24389 ENSMUSG00000026098.13 ENSMUSG00000026098 ENSMUST00000188890 Pms1 protein_coding Interval_74618 chr17 53854175 53854577 + 0 NA Intergenic Intergenic -8037 ENSMUSG00000023122.6 ENSMUSG00000023122 ENSMUST00000023886 Sult1c2 protein_coding Interval_1021 chr1 14161999 14162725 + 0 NA Intergenic Intergenic -20216 ENSMUSG00000095853.1 ENSMUSG00000095853 ENSMUST00000179783 Gm22616 miRNA Interval_105284 chr3 84569184 84569748 + 0 NA intron (ENSMUSG00000074513.9, intron 1 of 8) protein_coding-intron (ENSMUSG00000074513.9, intron 1 of 7) -11679 ENSMUSG00000103741.1 ENSMUSG00000103741 ENSMUST00000192641 Gm38241 processed_pseudogene Interval_152813 chr7 138159551 138160158 + 0 NA Intergenic Intergenic -58315 ENSMUSG00000064575.1 ENSMUSG00000064575 ENSMUST00000082641 Gm25798 snRNA Interval_43360 chr13 29671461 29671661 + 0 NA intron (ENSMUSG00000006191.17, intron 8 of 11) protein_coding-intron (ENSMUSG00000006191.17, intron 8 of 15) -154107 ENSMUSG00000006191.17 ENSMUSG00000006191 ENSMUST00000129231 Cdkal1 protein_coding Interval_147093 chr7 62462275 62464719 + 0 NA exon (ENSMUSG00000070526.2, exon 1 of 1) protein_coding-exon (ENSMUSG00000070526.2, exon 1 of 1) 1013 ENSMUSG00000070526.2 ENSMUSG00000070526 ENSMUST00000094339 Peg12 protein_coding Interval_48167 chr13 96918507 96918794 + 0 NA Intergenic Intergenic -6039 ENSMUSG00000091387.2 ENSMUSG00000091387 ENSMUST00000171324 Gcnt4 protein_coding Interval_132766 chr5 147744460 147745749 + 0 NA promoter-TSS (ENSMUSG00000106845.1) lincRNA-promoter-TSS (ENSMUSG00000106845.1) -412 ENSMUSG00000106845.1 ENSMUSG00000106845 ENSMUST00000202338 Gm43156 lincRNA Interval_127560 chr5 105295430 105295940 + 0 NA Intergenic Intergenic -1990 ENSMUSG00000079362.5 ENSMUSG00000079362 ENSMUST00000050011 Gm43302 protein_coding Interval_173130 chrX 73052487 73054392 + 0 NA Intergenic Intergenic 3433 ENSMUSG00000109025.1 ENSMUSG00000109025 ENSMUST00000208582 Gm6858 unprocessed_pseudogene Interval_69800 chr16 96643590 96644234 + 0 NA exon (ENSMUSG00000050272.10, exon 26 of 33) protein_coding-exon (ENSMUSG00000050272.10, exon 26 of 33) 9542 ENSMUSG00000117179.1 ENSMUSG00000117179 ENSMUST00000233591 Gm49907 antisense Interval_145586 chr7 35734917 35735388 + 0 NA intron (ENSMUSG00000043671.14, intron 3 of 18) protein_coding-intron (ENSMUSG00000043671.14, intron 3 of 18) -26587 ENSMUSG00000043671.14 ENSMUSG00000043671 ENSMUST00000124116 Dpy19l3 protein_coding Interval_133600 chr6 7446747 7447966 + 0 NA Intergenic Intergenic 71389 ENSMUSG00000107517.1 ENSMUSG00000107517 ENSMUST00000203145 Gm44046 TEC Interval_107810 chr3 115673230 115674106 + 0 NA Intergenic Intergenic 41404 ENSMUSG00000045092.8 ENSMUSG00000045092 ENSMUST00000055676 S1pr1 protein_coding Interval_102173 chr3 19187252 19189300 + 0 NA promoter-TSS (ENSMUSG00000027601.13) protein_coding-promoter-TSS (ENSMUSG00000027601.13) 2 ENSMUSG00000027601.13 ENSMUSG00000027601 ENSMUST00000131053 Mtfr1 protein_coding Interval_54396 chr14 68355840 68356731 + 0 NA Intergenic Intergenic -105346 ENSMUSG00000114396.1 ENSMUSG00000114396 ENSMUST00000225482 Gm31227 lincRNA Interval_172533 chrX 35877859 35878090 + 0 NA Intergenic Intergenic 39847 ENSMUSG00000087847.1 ENSMUSG00000087847 ENSMUST00000157222 Gm25624 scaRNA Interval_22647 chr11 12463858 12465824 + 0 NA promoter-TSS (ENSMUSG00000020173.17) protein_coding-promoter-TSS (ENSMUSG00000020173.17) -52697 ENSMUSG00000020173.17 ENSMUSG00000020173 ENSMUST00000146067 Cobl protein_coding Interval_47749 chr13 92291197 92291827 + 0 NA intron (ENSMUSG00000014850.15, intron 13 of 24) protein_coding-intron (ENSMUSG00000014850.15, intron 12 of 23) -14468 ENSMUSG00000100622.1 ENSMUSG00000100622 ENSMUST00000188317 Gm20379 protein_coding Interval_103337 chr3 39334606 39336142 + 0 NA Intergenic Intergenic 23529 ENSMUSG00000050533.3 ENSMUSG00000050533 ENSMUST00000056409 Gm9845 processed_pseudogene Interval_25509 chr11 49370431 49370756 + 0 NA Intergenic Intergenic -34027 ENSMUSG00000084278.1 ENSMUSG00000084278 ENSMUST00000119779 Gm12189 processed_pseudogene Interval_85903 chr19 32866984 32869429 + 0 NA Intergenic Intergenic 56981 ENSMUSG00000013663.7 ENSMUSG00000013663 ENSMUST00000154806 Pten protein_coding Interval_117712 chr4 125718425 125720499 + 0 NA Intergenic Intergenic 202955 ENSMUSG00000085562.7 ENSMUSG00000085562 ENSMUST00000144539 2610028E06Rik lincRNA Interval_28604 chr11 77093199 77093494 + 0 NA intron (ENSMUSG00000050944.14, intron 11 of 11) protein_coding-intron (ENSMUSG00000050944.14, intron 17 of 17) 14834 ENSMUSG00000082550.1 ENSMUSG00000082550 ENSMUST00000117087 Gm12344 processed_pseudogene Interval_160862 chr8 114115148 114116753 + 0 NA Intergenic Intergenic -17691 ENSMUSG00000031767.13 ENSMUSG00000031767 ENSMUST00000134593 Nudt7 protein_coding Interval_164019 chr9 30953214 30953760 + 0 NA TTS (ENSMUSG00000111673.1) antisense-TTS (ENSMUSG00000111673.1) 10029 ENSMUSG00000031994.13 ENSMUSG00000031994 ENSMUST00000163037 Adamts8 protein_coding Interval_108534 chr3 128137654 128138652 + 0 NA intron (ENSMUSG00000105816.4, intron 3 of 5) processed_transcript-intron (ENSMUSG00000105816.4, intron 3 of 3) -4793 ENSMUSG00000105816.4 ENSMUSG00000105816 ENSMUST00000198275 D030025E07Rik processed_transcript Interval_91495 chr2 39404975 39405298 + 0 NA Intergenic Intergenic 9723 ENSMUSG00000083401.1 ENSMUSG00000083401 ENSMUST00000120391 Gm13506 unprocessed_pseudogene Interval_77898 chr18 5138688 5139407 + 0 NA Intergenic Intergenic 26684 ENSMUSG00000097888.2 ENSMUSG00000097888 ENSMUST00000180850 Gm26682 lincRNA Interval_74016 chr17 46069796 46070269 + 0 NA intron (ENSMUSG00000117287.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000117287.1, intron 1 of 2) 14234 ENSMUSG00000117287.1 ENSMUSG00000117287 ENSMUST00000233284 Gm36200 lincRNA Interval_114763 chr4 84861847 84863404 + 0 NA Intergenic Intergenic -21840 ENSMUSG00000038070.15 ENSMUSG00000038070 ENSMUST00000107190 Cntln protein_coding Interval_14781 chr10 39786656 39787759 + 0 NA intron (ENSMUSG00000019841.15, intron 3 of 32) protein_coding-intron (ENSMUSG00000019841.15, intron 2 of 31) -34339 ENSMUSG00000081608.1 ENSMUSG00000081608 ENSMUST00000122161 Gm16210 processed_pseudogene Interval_11309 chr1 180869970 180870884 + 0 NA Intergenic Intergenic -4451 ENSMUSG00000104251.1 ENSMUSG00000104251 ENSMUST00000195256 Gm18036 processed_pseudogene Interval_116472 chr4 114128772 114129089 + 0 NA Intergenic Intergenic 6891 ENSMUSG00000118515.1 ENSMUSG00000118515 ENSMUST00000238945 AL627257.1 processed_pseudogene Interval_95452 chr2 109676018 109676356 + 0 NA promoter-TSS (ENSMUSG00000048482.14) protein_coding-promoter-TSS (ENSMUSG00000048482.14) 404 ENSMUSG00000109604.1 ENSMUSG00000109604 ENSMUST00000209925 Gm45346 antisense Interval_61104 chr15 79250714 79252745 + 0 NA exon (ENSMUSG00000032988.4, exon 1 of 1) protein_coding-exon (ENSMUSG00000032988.4, exon 1 of 1) 989 ENSMUSG00000032988.4 ENSMUSG00000032988 ENSMUST00000230477 Slc16a8 protein_coding Interval_47161 chr13 76738552 76738910 + 0 NA intron (ENSMUSG00000021596.16, intron 6 of 20) protein_coding-intron (ENSMUSG00000021596.16, intron 6 of 20) 42112 ENSMUSG00000090027.1 ENSMUSG00000090027 ENSMUST00000159703 Gm15740 processed_pseudogene Interval_99140 chr2 157434199 157435052 + 0 NA intron (ENSMUSG00000027646.15, intron 2 of 3) protein_coding-intron (ENSMUSG00000027646.15, intron 1 of 13) 10509 ENSMUSG00000027646.15 ENSMUSG00000027646 ENSMUST00000109529 Src protein_coding Interval_149009 chr7 91687342 91688021 + 0 NA intron (ENSMUSG00000052572.19, intron 1 of 21) protein_coding-intron (ENSMUSG00000052572.19, intron 2 of 22) -1788 ENSMUSG00000109037.1 ENSMUSG00000109037 ENSMUST00000207840 C030038I04Rik TEC Interval_105977 chr3 90412451 90413505 + 0 NA intron (ENSMUSG00000027933.11, intron 6 of 8) protein_coding-intron (ENSMUSG00000027933.11, intron 6 of 29) -9764 ENSMUSG00000027933.11 ENSMUSG00000027933 ENSMUST00000198562 Ints3 protein_coding Interval_26667 chr11 59562427 59563251 + 0 NA intron (ENSMUSG00000032691.14, intron 7 of 9) protein_coding-intron (ENSMUSG00000032691.14, intron 8 of 10) 13330 ENSMUSG00000059610.5 ENSMUSG00000059610 ENSMUST00000071943 Olfr222 protein_coding Interval_104348 chr3 63898441 63900458 + 0 NA promoter-TSS (ENSMUSG00000036834.16) protein_coding-promoter-TSS (ENSMUSG00000036834.16) 23 ENSMUSG00000036834.16 ENSMUSG00000036834 ENSMUST00000161052 Plch1 protein_coding Interval_61563 chr15 82379570 82380243 + 0 NA intron (ENSMUSG00000061740.8, intron 1 of 7) protein_coding-intron (ENSMUSG00000061740.8, intron 1 of 9) 354 ENSMUSG00000061740.8 ENSMUSG00000061740 ENSMUST00000229438 Cyp2d22 protein_coding Interval_57283 chr15 8418432 8418651 + 0 NA intron (ENSMUSG00000022141.7, intron 1 of 46) protein_coding-intron (ENSMUSG00000022141.7, intron 1 of 46) 25922 ENSMUSG00000022141.7 ENSMUSG00000022141 ENSMUST00000052965 Nipbl protein_coding Interval_12503 chr1 194505636 194506661 + 0 NA Intergenic Intergenic -112070 ENSMUSG00000026640.12 ENSMUSG00000026640 ENSMUST00000124785 Plxna2 protein_coding Interval_72815 chr17 32350149 32351029 + 0 NA promoter-TSS (ENSMUSG00000002625.10) protein_coding-promoter-TSS (ENSMUSG00000002625.10) -14036 ENSMUSG00000002625.10 ENSMUSG00000002625 ENSMUST00000235387 Akap8l protein_coding Interval_49560 chr13 112970112 112970979 + 0 NA Intergenic Intergenic -17259 ENSMUSG00000042417.5 ENSMUSG00000042417 ENSMUST00000224100 Ccno protein_coding Interval_82751 chr18 76465605 76466356 + 0 NA Intergenic Intergenic 144156 ENSMUSG00000117816.1 ENSMUSG00000117816 ENSMUST00000235901 Gm50360 processed_pseudogene Interval_71489 chr17 24119626 24120509 + 0 NA intron (ENSMUSG00000024122.16, intron 1 of 6) protein_coding-intron (ENSMUSG00000024122.16, intron 1 of 13) 727 ENSMUSG00000024122.16 ENSMUSG00000024122 ENSMUST00000128997 Pdpk1 protein_coding Interval_101003 chr2 174120543 174121685 + 0 NA TTS (ENSMUSG00000039263.16) protein_coding-TTS (ENSMUSG00000039263.16) 4774 ENSMUSG00000074555.5 ENSMUSG00000074555 ENSMUST00000166709 Gm10714 antisense Interval_72179 chr17 28450199 28450753 + 0 NA intron (ENSMUSG00000117084.1, intron 1 of 2) protein_coding-intron (ENSMUSG00000024222.17, intron 1 of 10) 3615 ENSMUSG00000088022.1 ENSMUSG00000088022 ENSMUST00000157397 Gm49799 misc_RNA Interval_83508 chr18 88523262 88523628 + 0 NA Intergenic Intergenic -85957 ENSMUSG00000118352.1 ENSMUSG00000118352 ENSMUST00000237266 Gm50401 lincRNA Interval_1742 chr1 33452305 33452505 + 0 NA Intergenic Intergenic 29672 ENSMUSG00000065260.1 ENSMUSG00000065260 ENSMUST00000083326 Gm23453 snRNA Interval_45289 chr13 54067668 54068093 + 0 NA Intergenic Intergenic -13100 ENSMUSG00000021478.6 ENSMUSG00000021478 ENSMUST00000222706 Drd1 protein_coding Interval_59178 chr15 46683952 46684134 + 0 NA Intergenic Intergenic 60738 ENSMUSG00000051198.6 ENSMUSG00000051198 ENSMUST00000060825 4930548G14Rik lincRNA Interval_77899 chr18 5142650 5143884 + 0 NA Intergenic Intergenic 22464 ENSMUSG00000097888.2 ENSMUSG00000097888 ENSMUST00000180850 Gm26682 lincRNA Interval_156316 chr8 47338802 47339709 + 0 NA intron (ENSMUSG00000038143.16, intron 7 of 7) protein_coding-intron (ENSMUSG00000038143.16, intron 1 of 4) 74582 ENSMUSG00000038143.16 ENSMUSG00000038143 ENSMUST00000181417 Stox2 protein_coding Interval_134774 chr6 31382645 31384031 + 0 NA exon (ENSMUSG00000086212.7, exon 3 of 3) lincRNA-exon (ENSMUSG00000086212.7, exon 3 of 3) 10443 ENSMUSG00000086855.1 ENSMUSG00000086855 ENSMUST00000134541 Gm13844 lincRNA Interval_21928 chr11 5253010 5253212 + 0 NA intron (ENSMUSG00000020393.16, intron 1 of 8) protein_coding-intron (ENSMUSG00000020393.16, intron 1 of 8) 1261 ENSMUSG00000064632.1 ENSMUSG00000064632 ENSMUST00000082698 Gm25142 snRNA Interval_133130 chr5 150060889 150061301 + 0 NA intron (ENSMUSG00000053368.13, intron 12 of 16) protein_coding-intron (ENSMUSG00000053368.13, intron 13 of 17) 21700 ENSMUSG00000107384.1 ENSMUSG00000107384 ENSMUST00000202037 Gm42557 antisense Interval_96072 chr2 119601354 119601691 + 0 NA TTS (ENSMUSG00000085438.1) lincRNA-TTS (ENSMUSG00000085438.1) 7219 ENSMUSG00000085438.1 ENSMUSG00000085438 ENSMUST00000153581 Oip5os1 lincRNA Interval_107643 chr3 109171101 109171745 + 0 NA Intergenic Intergenic 21444 ENSMUSG00000083717.1 ENSMUSG00000083717 ENSMUST00000120957 Gm13865 processed_pseudogene Interval_75404 chr17 66379176 66380439 + 0 NA promoter-TSS (ENSMUSG00000052105.17) protein_coding-promoter-TSS (ENSMUSG00000052105.17) 34177 ENSMUSG00000093686.1 ENSMUSG00000093686 ENSMUST00000177415 Gm4705 processed_pseudogene Interval_60741 chr15 76468178 76468780 + 0 NA intron (ENSMUSG00000022557.11, intron 2 of 15) protein_coding-intron (ENSMUSG00000022557.11, intron 2 of 15) 11027 ENSMUSG00000034161.8 ENSMUSG00000034161 ENSMUST00000043089 Scx protein_coding Interval_42732 chr13 18687388 18688103 + 0 NA Intergenic Intergenic -42396 ENSMUSG00000114118.1 ENSMUSG00000114118 ENSMUST00000221183 Gm48829 lincRNA Interval_72964 chr17 33842555 33843761 + 0 NA promoter-TSS (ENSMUSG00000002308.16) protein_coding-promoter-TSS (ENSMUSG00000002308.16) 5 ENSMUSG00000002308.16 ENSMUSG00000002308 ENSMUST00000087559 Cd320 protein_coding Interval_153809 chr8 8835781 8836580 + 0 NA intron (ENSMUSG00000109371.1, intron 2 of 4) lincRNA-intron (ENSMUSG00000109371.1, intron 2 of 4) 96519 ENSMUSG00000109346.1 ENSMUSG00000109346 ENSMUST00000209045 Gm44515 lincRNA Interval_4064 chr1 67020237 67021188 + 0 NA exon (ENSMUSG00000026000.16, exon 1 of 1) protein_coding-exon (ENSMUSG00000026000.16, exon 1 of 1) 1506 ENSMUSG00000026000.16 ENSMUSG00000026000 ENSMUST00000189210 Lancl1 protein_coding Interval_152085 chr7 128997912 128998119 + 0 NA promoter-TSS (ENSMUSG00000108540.1) processed_pseudogene-promoter-TSS (ENSMUSG00000108540.1) 6 ENSMUSG00000108540.1 ENSMUSG00000108540 ENSMUST00000206199 Gm4768 processed_pseudogene Interval_79528 chr18 32894351 32895153 + 0 NA Intergenic Intergenic -14079 ENSMUSG00000098252.1 ENSMUSG00000098252 ENSMUST00000185079 Mir6361 miRNA Interval_58698 chr15 37192723 37193436 + 0 NA Intergenic Intergenic -10378 ENSMUSG00000115621.1 ENSMUSG00000115621 ENSMUST00000226193 Gm8664 processed_pseudogene Interval_135666 chr6 42763292 42763830 + 0 NA TTS (ENSMUSG00000095236.2) protein_coding-TTS (ENSMUSG00000095236.2) 7157 ENSMUSG00000095236.2 ENSMUSG00000095236 ENSMUST00000074499 Olfr38 protein_coding Interval_27835 chr11 70321396 70323192 + 0 NA promoter-TSS (ENSMUSG00000018907.10) protein_coding-promoter-TSS (ENSMUSG00000018907.10) 154 ENSMUSG00000018907.10 ENSMUSG00000018907 ENSMUST00000149060 Alox12e protein_coding Interval_26460 chr11 57986505 57987134 + 0 NA Intergenic Intergenic -13685 ENSMUSG00000086666.1 ENSMUSG00000086666 ENSMUST00000132323 Gm12249 lincRNA Interval_81086 chr18 53736442 53736632 + 0 NA intron (ENSMUSG00000048799.8, intron 4 of 14) protein_coding-intron (ENSMUSG00000048799.8, intron 4 of 20) 8026 ENSMUSG00000048799.8 ENSMUSG00000048799 ENSMUST00000235928 Cep120 protein_coding Interval_58795 chr15 38113696 38113988 + 0 NA Intergenic Intergenic 34740 ENSMUSG00000115771.1 ENSMUSG00000115771 ENSMUST00000228698 Gm49312 bidirectional_promoter_lncRNA Interval_152714 chr7 136776841 136777053 + 0 NA Intergenic Intergenic -33962 ENSMUSG00000110126.1 ENSMUSG00000110126 ENSMUST00000211473 Gm9347 processed_pseudogene Interval_55324 chr14 82893114 82894109 + 0 NA TTS (ENSMUSG00000115031.1) processed_pseudogene-TTS (ENSMUSG00000115031.1) 774 ENSMUSG00000115031.1 ENSMUSG00000115031 ENSMUST00000228219 Gm49051 processed_pseudogene Interval_72292 chr17 29006995 29008696 + 0 NA promoter-TSS (ENSMUSG00000024006.17) protein_coding-promoter-TSS (ENSMUSG00000024006.17) -13448 ENSMUSG00000087308.1 ENSMUSG00000087308 ENSMUST00000130607 Gm16195 lincRNA Interval_129271 chr5 118577583 118577991 + 0 NA intron (ENSMUSG00000018076.12, intron 1 of 1) protein_coding-intron (ENSMUSG00000018076.12, intron 1 of 30) -14686 ENSMUSG00000106912.1 ENSMUSG00000106912 ENSMUST00000201036 Gm43785 TEC Interval_174007 chrX 129402556 129403235 + 0 NA Intergenic Intergenic -97822 ENSMUSG00000087983.1 ENSMUSG00000087983 ENSMUST00000157358 Gm22225 misc_RNA Interval_151543 chr7 123410690 123410873 + 0 NA exon (ENSMUSG00000030763.7, exon 6 of 11) protein_coding-exon (ENSMUSG00000030763.7, exon 6 of 11) -17079 ENSMUSG00000030763.7 ENSMUSG00000030763 ENSMUST00000206727 Lcmt1 protein_coding Interval_152621 chr7 135428554 135429626 + 0 NA Intergenic Intergenic 18723 ENSMUSG00000048377.7 ENSMUSG00000048377 ENSMUST00000238917 Foxi2 protein_coding Interval_52610 chr14 47896319 47897334 + 0 NA Intergenic Intergenic -2025 ENSMUSG00000115609.1 ENSMUSG00000115609 ENSMUST00000226469 4930447J18Rik lincRNA Interval_159285 chr8 92777035 92777754 + 0 NA Intergenic Intergenic -60419 ENSMUSG00000078967.5 ENSMUSG00000078967 ENSMUST00000181181 Gapdh-ps16 processed_pseudogene Interval_148100 chr7 79222575 79223507 + 0 NA Intergenic Intergenic 49770 ENSMUSG00000108387.1 ENSMUSG00000108387 ENSMUST00000206434 Gm31510 bidirectional_promoter_lncRNA Interval_26796 chr11 60536756 60539229 + 0 NA promoter-TSS (ENSMUSG00000042650.3) protein_coding-promoter-TSS (ENSMUSG00000042650.3) 1611 ENSMUSG00000042650.3 ENSMUSG00000042650 ENSMUST00000044250 Alkbh5 protein_coding Interval_132212 chr5 143372597 143373276 + 0 NA promoter-TSS (ENSMUSG00000010825.17) protein_coding-promoter-TSS (ENSMUSG00000010825.17) -38 ENSMUSG00000010825.17 ENSMUSG00000010825 ENSMUST00000138948 Grid2ip protein_coding Interval_15824 chr10 57588294 57588531 + 0 NA Intergenic Intergenic -12981 ENSMUSG00000093406.1 ENSMUSG00000093406 ENSMUST00000177147 Rpl48-ps1 processed_pseudogene Interval_140575 chr6 119706306 119707189 + 0 NA intron (ENSMUSG00000030172.15, intron 15 of 20) protein_coding-intron (ENSMUSG00000030172.15, intron 14 of 18) -84642 ENSMUSG00000030172.15 ENSMUSG00000030172 ENSMUST00000183741 Erc1 protein_coding Interval_66596 chr16 35503858 35504823 + 0 NA intron (ENSMUSG00000099429.1, intron 2 of 2) lincRNA-intron (ENSMUSG00000099429.1, intron 2 of 2) 5079 ENSMUSG00000099429.1 ENSMUSG00000099429 ENSMUST00000187829 1600019K03Rik lincRNA Interval_90078 chr2 27764402 27765345 + 0 NA Intergenic Intergenic 39654 ENSMUSG00000015846.15 ENSMUSG00000015846 ENSMUST00000148756 Rxra protein_coding Interval_142786 chr6 145677572 145677816 + 0 NA Intergenic Intergenic 61937 ENSMUSG00000067338.6 ENSMUSG00000067338 ENSMUST00000087445 Tuba3b protein_coding Interval_103732 chr3 52163731 52164556 + 0 NA intron (ENSMUSG00000103655.1, intron 2 of 3) lincRNA-intron (ENSMUSG00000103655.1, intron 2 of 3) 15829 ENSMUSG00000103726.1 ENSMUSG00000103726 ENSMUST00000193192 Gm30074 lincRNA Interval_156180 chr8 45654697 45654990 + 0 NA intron (ENSMUSG00000031626.18, intron 2 of 6) protein_coding-intron (ENSMUSG00000031626.18, intron 1 of 25) -49703 ENSMUSG00000084954.2 ENSMUSG00000084954 ENSMUST00000142008 Gm16351 antisense Interval_145753 chr7 38049084 38049411 + 0 NA TTS (ENSMUSG00000108726.1) lincRNA-TTS (ENSMUSG00000108726.1) -10069 ENSMUSG00000108334.1 ENSMUSG00000108334 ENSMUST00000205683 Gm30771 lincRNA Interval_73327 chr17 36226950 36227744 + 0 NA promoter-TSS (ENSMUSG00000092428.1) processed_pseudogene-promoter-TSS (ENSMUSG00000092428.1) -323 ENSMUSG00000092428.1 ENSMUSG00000092428 ENSMUST00000174739 Gm20545 processed_pseudogene Interval_17168 chr10 73437394 73438391 + 0 NA intron (ENSMUSG00000052613.16, intron 1 of 1) protein_coding-intron (ENSMUSG00000052613.16, intron 1 of 13) -52082 ENSMUSG00000085176.1 ENSMUSG00000085176 ENSMUST00000145790 Gm15397 sense_intronic Interval_4231 chr1 71936659 71937187 + 0 NA Intergenic Intergenic -37988 ENSMUSG00000101211.1 ENSMUSG00000101211 ENSMUST00000189983 Gm28818 lincRNA Interval_108330 chr3 124149021 124149245 + 0 NA Intergenic Intergenic -97104 ENSMUSG00000104531.1 ENSMUSG00000104531 ENSMUST00000196150 Gm43731 lincRNA Interval_109682 chr3 145977871 145979067 + 0 NA Intergenic Intergenic -9668 ENSMUSG00000036863.12 ENSMUSG00000036863 ENSMUST00000195918 Syde2 protein_coding Interval_99381 chr2 160471144 160472047 + 0 NA Intergenic Intergenic -104530 ENSMUSG00000074622.4 ENSMUSG00000074622 ENSMUST00000099126 Mafb protein_coding Interval_43530 chr13 32806597 32807199 + 0 NA promoter-TSS (ENSMUSG00000021400.8) protein_coding-promoter-TSS (ENSMUSG00000021400.8) -3807 ENSMUSG00000042874.2 ENSMUSG00000042874 ENSMUST00000057911 D930007J09Rik antisense Interval_21168 chr10 127018436 127018831 + 0 NA intron (ENSMUSG00000025432.11, intron 18 of 18) protein_coding-intron (ENSMUSG00000025432.11, intron 19 of 19) 12170 ENSMUSG00000040521.11 ENSMUSG00000040521 ENSMUST00000134917 Tsfm protein_coding Interval_132604 chr5 146691370 146692612 + 0 NA Intergenic Intergenic -14631 ENSMUSG00000106020.1 ENSMUSG00000106020 ENSMUST00000197707 4930573C15Rik lincRNA Interval_60481 chr15 74204410 74204675 + 0 NA Intergenic Intergenic -110209 ENSMUSG00000082585.3 ENSMUSG00000082585 ENSMUST00000120421 Gm15387 processed_pseudogene Interval_48780 chr13 103150362 103151461 + 0 NA intron (ENSMUSG00000034751.17, intron 2 of 3) protein_coding-intron (ENSMUSG00000034751.17, intron 2 of 4) 9927 ENSMUSG00000091577.2 ENSMUSG00000091577 ENSMUST00000167849 Gm6211 transcribed_processed_pseudogene Interval_144057 chr7 19222246 19222885 + 0 NA exon (ENSMUSG00000044317.7, exon 2 of 2) protein_coding-exon (ENSMUSG00000044317.7, exon 2 of 2) -5818 ENSMUSG00000052214.9 ENSMUSG00000052214 ENSMUST00000161711 Opa3 protein_coding Interval_65538 chr16 23151417 23152123 + 0 NA intron (ENSMUSG00000022878.5, intron 1 of 2) protein_coding-intron (ENSMUSG00000022878.5, intron 1 of 2) 5124 ENSMUSG00000022878.5 ENSMUSG00000022878 ENSMUST00000171309 Adipoq protein_coding Interval_114363 chr4 74283429 74284550 + 0 NA intron (ENSMUSG00000028397.13, intron 3 of 7) protein_coding-intron (ENSMUSG00000028397.13, intron 4 of 21) 21180 ENSMUSG00000028397.13 ENSMUSG00000028397 ENSMUST00000150439 Kdm4c protein_coding Interval_157494 chr8 70879614 70880858 + 0 NA Intergenic Intergenic -6853 ENSMUSG00000007721.6 ENSMUSG00000007721 ENSMUST00000212680 Ccdc124 protein_coding Interval_60443 chr15 73779905 73780385 + 0 NA intron (ENSMUSG00000072487.11, intron 19 of 29) protein_coding-intron (ENSMUSG00000072487.11, intron 19 of 25) 29751 ENSMUSG00000083380.1 ENSMUSG00000083380 ENSMUST00000120938 Ndufb4c processed_pseudogene Interval_145500 chr7 35245014 35245675 + 0 NA intron (ENSMUSG00000118454.1, intron 9 of 9) protein_coding-intron (ENSMUSG00000118454.1, intron 9 of 9) 28109 ENSMUSG00000088307.1 ENSMUSG00000088307 ENSMUST00000157682 Gm24505 snoRNA Interval_10677 chr1 172632345 172633390 + 0 NA promoter-TSS (ENSMUSG00000026544.6) protein_coding-promoter-TSS (ENSMUSG00000026544.6) 95 ENSMUSG00000026544.6 ENSMUSG00000026544 ENSMUST00000027826 Dusp23 protein_coding Interval_91307 chr2 37611159 37611918 + 0 NA intron (ENSMUSG00000026915.16, intron 9 of 18) protein_coding-intron (ENSMUSG00000026915.16, intron 9 of 16) -25020 ENSMUSG00000026915.16 ENSMUSG00000026915 ENSMUST00000144206 Strbp protein_coding Interval_17111 chr10 71399704 71400560 + 0 NA intron (ENSMUSG00000060733.13, intron 1 of 2) protein_coding-intron (ENSMUSG00000060733.13, intron 1 of 2) 52296 ENSMUSG00000060733.13 ENSMUSG00000060733 ENSMUST00000145521 Ipmk protein_coding Interval_29547 chr11 84828579 84830253 + 0 NA promoter-TSS (ENSMUSG00000034449.7) protein_coding-promoter-TSS (ENSMUSG00000034449.7) 238 ENSMUSG00000086799.1 ENSMUSG00000086799 ENSMUST00000126016 4930502E09Rik processed_transcript Interval_5420 chr1 88656049 88656360 + 0 NA promoter-TSS (ENSMUSG00000100367.1) lincRNA-promoter-TSS (ENSMUSG00000100367.1) -104 ENSMUSG00000100367.1 ENSMUSG00000100367 ENSMUST00000186042 Gm29336 lincRNA Interval_107950 chr3 117233144 117233348 + 0 NA Intergenic Intergenic -9644 ENSMUSG00000105914.1 ENSMUSG00000105914 ENSMUST00000198592 Gm19243 processed_pseudogene Interval_30019 chr11 88717794 88719306 + 0 NA promoter-TSS (ENSMUSG00000069769.13) protein_coding-promoter-TSS (ENSMUSG00000069769.13) -95 ENSMUSG00000087574.1 ENSMUSG00000087574 ENSMUST00000125967 C030037D09Rik lincRNA Interval_149590 chr7 99876229 99877019 + 0 NA promoter-TSS (ENSMUSG00000109002.1) antisense-promoter-TSS (ENSMUSG00000109002.1) 12711 ENSMUSG00000109002.1 ENSMUSG00000109002 ENSMUST00000208321 Gm38405 antisense Interval_9934 chr1 164218139 164218378 + 0 NA intron (ENSMUSG00000026579.8, intron 24 of 24) protein_coding-intron (ENSMUSG00000026579.8, intron 24 of 24) -30995 ENSMUSG00000040918.12 ENSMUSG00000040918 ENSMUST00000160773 Slc19a2 protein_coding Interval_73534 chr17 39768308 39769441 + 0 NA Intergenic Intergenic 43148 ENSMUSG00000117319.1 ENSMUSG00000117319 ENSMUST00000233822 Gm49833 unprocessed_pseudogene Interval_69772 chr16 96158807 96160354 + 0 NA TTS (ENSMUSG00000045275.16) protein_coding-TTS (ENSMUSG00000045275.16) -11996 ENSMUSG00000117129.1 ENSMUSG00000117129 ENSMUST00000233788 Gm49928 antisense Interval_165580 chr9 49829620 49830190 + 0 NA Intergenic Intergenic -3930 ENSMUSG00000094255.1 ENSMUSG00000094255 ENSMUST00000178565 Gm25633 snRNA Interval_101274 chr2 180103668 180105074 + 0 NA promoter-TSS (ENSMUSG00000039059.11) protein_coding-promoter-TSS (ENSMUSG00000039059.11) -220 ENSMUSG00000039059.11 ENSMUSG00000039059 ENSMUST00000166392 Hrh3 protein_coding Interval_155736 chr8 36580665 36581661 + 0 NA intron (ENSMUSG00000031523.16, intron 10 of 17) protein_coding-intron (ENSMUSG00000031523.16, intron 6 of 13) 91972 ENSMUSG00000039620.17 ENSMUSG00000039620 ENSMUST00000125492 Trmt9b protein_coding Interval_101178 chr2 178942945 178943426 + 0 NA Intergenic Intergenic 77948 ENSMUSG00000082215.3 ENSMUSG00000082215 ENSMUST00000118225 Gm14314 processed_pseudogene Interval_88155 chr19 59942809 59944068 + 0 NA promoter-TSS (ENSMUSG00000040022.14) protein_coding-promoter-TSS (ENSMUSG00000040022.14) 216 ENSMUSG00000040022.14 ENSMUSG00000040022 ENSMUST00000170819 Rab11fip2 protein_coding Interval_84988 chr19 21011916 21012228 + 0 NA Intergenic Intergenic 89680 ENSMUSG00000118293.1 ENSMUSG00000118293 ENSMUST00000238088 Gm32750 antisense Interval_66813 chr16 37812174 37812751 + 0 NA intron (ENSMUSG00000022816.11, intron 1 of 2) protein_coding-intron (ENSMUSG00000022816.11, intron 2 of 10) 35407 ENSMUSG00000022816.11 ENSMUSG00000022816 ENSMUST00000123077 Fstl1 protein_coding Interval_91175 chr2 35673099 35673855 + 0 NA intron (ENSMUSG00000026883.17, intron 1 of 3) protein_coding-intron (ENSMUSG00000026883.17, intron 3 of 15) -36850 ENSMUSG00000026883.17 ENSMUSG00000026883 ENSMUST00000156669 Dab2ip protein_coding Interval_21740 chr11 4046782 4047469 + 0 NA TTS (ENSMUSG00000019368.13) protein_coding-TTS (ENSMUSG00000019368.13) 15660 ENSMUSG00000019368.13 ENSMUSG00000019368 ENSMUST00000134482 Sec14l4 protein_coding Interval_160224 chr8 107254557 107255462 + 0 NA Intergenic Intergenic 8239 ENSMUSG00000057657.4 ENSMUSG00000057657 ENSMUST00000080443 Rps18-ps3 processed_pseudogene Interval_88208 chr19 60674934 60675631 + 0 NA Intergenic Intergenic 63995 ENSMUSG00000117790.1 ENSMUSG00000117790 ENSMUST00000236155 Gm46652 lincRNA Interval_77216 chr17 87412320 87412669 + 0 NA intron (ENSMUSG00000036557.8, intron 3 of 4) protein_coding-intron (ENSMUSG00000036557.8, intron 3 of 6) 15141 ENSMUSG00000036557.8 ENSMUSG00000036557 ENSMUST00000189487 Stpg4 protein_coding Interval_73478 chr17 37810266 37811573 + 0 NA Intergenic Intergenic 9740 ENSMUSG00000044985.6 ENSMUSG00000044985 ENSMUST00000053599 Olfr124 protein_coding Interval_128428 chr5 113271229 113271770 + 0 NA intron (ENSMUSG00000042216.13, intron 16 of 17) protein_coding-intron (ENSMUSG00000042216.13, intron 15 of 24) 7837 ENSMUSG00000042216.13 ENSMUSG00000042216 ENSMUST00000140981 Sgsm1 protein_coding Interval_140713 chr6 120788776 120789465 + 0 NA intron (ENSMUSG00000004902.7, intron 5 of 9) protein_coding-intron (ENSMUSG00000004902.7, intron 5 of 9) 8550 ENSMUSG00000093409.1 ENSMUSG00000093409 ENSMUST00000176615 Gm25193 miRNA Interval_53576 chr14 59472234 59472403 + 0 NA intron (ENSMUSG00000021981.10, intron 3 of 10) protein_coding-intron (ENSMUSG00000021981.10, intron 3 of 10) 31337 ENSMUSG00000021981.10 ENSMUSG00000021981 ENSMUST00000224893 Cab39l protein_coding Interval_167073 chr9 65073486 65073833 + 0 NA intron (ENSMUSG00000032393.15, intron 14 of 18) protein_coding-intron (ENSMUSG00000032393.15, intron 16 of 20) 20696 ENSMUSG00000111471.1 ENSMUSG00000111471 ENSMUST00000214559 Gm47350 antisense Interval_3008 chr1 52118973 52120085 + 0 NA promoter-TSS (ENSMUSG00000026104.14) protein_coding-promoter-TSS (ENSMUSG00000026104.14) 39 ENSMUSG00000026104.14 ENSMUSG00000026104 ENSMUST00000189336 Stat1 protein_coding Interval_154675 chr8 22508141 22509352 + 0 NA intron (ENSMUSG00000037656.9, intron 2 of 2) protein_coding-intron (ENSMUSG00000037656.9, intron 1 of 10) 2520 ENSMUSG00000037656.9 ENSMUSG00000037656 ENSMUST00000210388 Slc20a2 protein_coding Interval_8388 chr1 138618042 138618258 + 0 NA intron (ENSMUSG00000026393.10, intron 1 of 9) protein_coding-intron (ENSMUSG00000026393.10, intron 1 of 7) 1554 ENSMUSG00000026393.10 ENSMUSG00000026393 ENSMUST00000191549 Nek7 protein_coding Interval_141219 chr6 125712169 125712424 + 0 NA exon (ENSMUSG00000038115.16, exon 3 of 16) protein_coding-exon (ENSMUSG00000038115.16, exon 3 of 16) 1670 ENSMUSG00000038115.16 ENSMUSG00000038115 ENSMUST00000159984 Ano2 protein_coding Interval_21711 chr11 3863026 3864526 + 0 NA exon (ENSMUSG00000020435.17, exon 1 of 14) protein_coding-exon (ENSMUSG00000020435.17, exon 1 of 14) -9179 ENSMUSG00000084077.1 ENSMUSG00000084077 ENSMUST00000121172 Gm11952 processed_pseudogene Interval_35482 chr12 22973782 22975572 + 0 NA intron (ENSMUSG00000073164.11, intron 3 of 4) lincRNA-intron (ENSMUSG00000073164.11, intron 2 of 3) -14371 ENSMUSG00000113670.1 ENSMUSG00000113670 ENSMUST00000222206 Gm49686 transcribed_unprocessed_pseudogene Interval_164550 chr9 38479865 38480317 + 0 NA Intergenic Intergenic -6994 ENSMUSG00000039962.3 ENSMUSG00000039962 ENSMUST00000045493 Olfr906 protein_coding Interval_55743 chr14 99492362 99492740 + 0 NA Intergenic Intergenic -29994 ENSMUSG00000115580.1 ENSMUSG00000115580 ENSMUST00000228876 Gm41230 lincRNA Interval_132314 chr5 144105859 144107088 + 0 NA intron (ENSMUSG00000038970.7, intron 1 of 13) protein_coding-intron (ENSMUSG00000038970.7, intron 1 of 13) 5299 ENSMUSG00000098039.1 ENSMUSG00000098039 ENSMUST00000182470 Gm26925 processed_pseudogene Interval_272 KZ289068.1 463169 467697 + 0 NA NA NA NA NA Interval_144614 chr7 27132639 27133213 + 0 NA intron (ENSMUSG00000052974.8, intron 9 of 9) protein_coding-intron (ENSMUSG00000052974.8, intron 9 of 9) -2252 ENSMUSG00000086868.1 ENSMUSG00000086868 ENSMUST00000153562 Gm15883 antisense Interval_49992 chr13 119393089 119393402 + 0 NA TTS (ENSMUSG00000025453.18) protein_coding-TTS (ENSMUSG00000025453.18) 15707 ENSMUSG00000116207.1 ENSMUSG00000116207 ENSMUST00000223268 Nnt protein_coding Interval_9957 chr1 164373179 164373464 + 0 NA promoter-TSS (ENSMUSG00000026575.15) protein_coding-promoter-TSS (ENSMUSG00000026575.15) -51392 ENSMUSG00000103493.1 ENSMUSG00000103493 ENSMUST00000194180 Gm37411 TEC Interval_47625 chr13 90289447 90291096 + 0 NA Intergenic Intergenic 52099 ENSMUSG00000102756.1 ENSMUSG00000102756 ENSMUST00000193481 Gm37054 TEC Interval_122037 chr5 14390681 14391275 + 0 NA Intergenic Intergenic 148516 ENSMUSG00000106310.1 ENSMUSG00000106310 ENSMUST00000197397 Gm43523 TEC Interval_152281 chr7 131355763 131355976 + 0 NA promoter-TSS (ENSMUSG00000040177.10) protein_coding-promoter-TSS (ENSMUSG00000040177.10) 6827 ENSMUSG00000040177.10 ENSMUSG00000040177 ENSMUST00000208509 2310057M21Rik protein_coding Interval_163386 chr9 21204366 21205383 + 0 NA intron (ENSMUSG00000032177.17, intron 10 of 13) protein_coding-intron (ENSMUSG00000032177.17, intron 6 of 9) -20497 ENSMUSG00000097439.6 ENSMUSG00000097439 ENSMUST00000193429 Gm16754 antisense Interval_108014 chr3 119943714 119944688 + 0 NA Intergenic Intergenic -24530 ENSMUSG00000104726.1 ENSMUSG00000104726 ENSMUST00000195974 Gm18384 processed_pseudogene Interval_62005 chr15 85837758 85838690 + 0 NA intron (ENSMUSG00000035944.17, intron 4 of 13) protein_coding-intron (ENSMUSG00000035944.17, intron 3 of 4) 5918 ENSMUSG00000035944.17 ENSMUSG00000035944 ENSMUST00000133158 Ttc38 protein_coding Interval_165326 chr9 46314155 46315148 + 0 NA intron (ENSMUSG00000056617.12, intron 3 of 12) protein_coding-intron (ENSMUSG00000056617.12, intron 3 of 12) -3064 ENSMUSG00000056617.12 ENSMUSG00000056617 ENSMUST00000160795 4931429L15Rik protein_coding Interval_113974 chr4 62188239 62189234 + 0 NA TTS (ENSMUSG00000028389.12) protein_coding-TTS (ENSMUSG00000028389.12) 19466 ENSMUSG00000028389.12 ENSMUSG00000028389 ENSMUST00000212325 Zfp37 protein_coding Interval_87538 chr19 53322544 53323446 + 0 NA TTS (ENSMUSG00000118369.1) processed_transcript-TTS (ENSMUSG00000118369.1) 2748 ENSMUSG00000118369.1 ENSMUSG00000118369 ENSMUST00000237210 Gm30541 processed_transcript Interval_109622 chr3 145407922 145408326 + 0 NA intron (ENSMUSG00000028197.4, intron 23 of 59) protein_coding-intron (ENSMUSG00000028197.4, intron 23 of 59) 9920 ENSMUSG00000105619.1 ENSMUSG00000105619 ENSMUST00000197919 9530034A14Rik antisense Interval_39798 chr12 98525088 98525755 + 0 NA exon (ENSMUSG00000113613.1, exon 3 of 3) antisense-exon (ENSMUSG00000113613.1, exon 3 of 3) 1577 ENSMUSG00000113613.1 ENSMUSG00000113613 ENSMUST00000220507 Gm40893 antisense Interval_157589 chr8 71579829 71581346 + 0 NA promoter-TSS (ENSMUSG00000031808.7) protein_coding-promoter-TSS (ENSMUSG00000031808.7) 10415 ENSMUSG00000031808.7 ENSMUSG00000031808 ENSMUST00000211811 Slc27a1 protein_coding Interval_45027 chr13 51603498 51604252 + 0 NA Intergenic Intergenic -34388 ENSMUSG00000021448.8 ENSMUSG00000021448 ENSMUST00000221850 Shc3 protein_coding Interval_157208 chr8 67901252 67902008 + 0 NA intron (ENSMUSG00000030465.19, intron 7 of 14) protein_coding-intron (ENSMUSG00000030465.19, intron 7 of 14) -55139 ENSMUSG00000087266.2 ENSMUSG00000087266 ENSMUST00000127631 Gm15991 antisense Interval_126010 chr5 76818812 76819323 + 0 NA intron (ENSMUSG00000036377.19, intron 1 of 3) protein_coding-intron (ENSMUSG00000036377.19, intron 1 of 3) 76011 ENSMUSG00000055923.16 ENSMUSG00000055923 ENSMUST00000134805 Aasdh protein_coding Interval_80993 chr18 52460078 52460870 + 0 NA Intergenic Intergenic -5248 ENSMUSG00000024528.8 ENSMUSG00000024528 ENSMUST00000237434 Srfbp1 protein_coding Interval_99244 chr2 158351148 158351538 + 0 NA Intergenic Intergenic 5211 ENSMUSG00000065362.1 ENSMUSG00000065362 ENSMUST00000083428 Gm24411 snoRNA Interval_47942 chr13 94525133 94525798 + 0 NA intron (ENSMUSG00000021686.6, intron 6 of 11) protein_coding-intron (ENSMUSG00000021686.6, intron 22 of 26) 8303 ENSMUSG00000084423.1 ENSMUSG00000084423 ENSMUST00000122474 Gm25109 miRNA Interval_166478 chr9 59941658 59942190 + 0 NA promoter-TSS (ENSMUSG00000110803.1) antisense-promoter-TSS (ENSMUSG00000110803.1) -847 ENSMUSG00000110803.1 ENSMUSG00000110803 ENSMUST00000215963 Gm20275 antisense Interval_146829 chr7 52726312 52726962 + 0 NA Intergenic Intergenic -28828 ENSMUSG00000074092.5 ENSMUSG00000074092 ENSMUST00000117187 Gm6181 processed_pseudogene Interval_142680 chr6 144990643 144991128 + 0 NA Intergenic Intergenic 47303 ENSMUSG00000088867.1 ENSMUSG00000088867 ENSMUST00000158242 Gm23071 rRNA Interval_69724 chr16 95823027 95824139 + 0 NA intron (ENSMUSG00000117232.1, intron 2 of 4) lincRNA-intron (ENSMUSG00000117232.1, intron 2 of 4) -15266 ENSMUSG00000085329.1 ENSMUSG00000085329 ENSMUST00000156615 2810404F17Rik lincRNA Interval_73676 chr17 42692891 42693713 + 0 NA Intergenic Intergenic -1040 ENSMUSG00000023918.12 ENSMUSG00000023918 ENSMUST00000164524 Adgrf4 protein_coding Interval_76247 chr17 78423109 78423860 + 0 NA Intergenic Intergenic 14668 ENSMUSG00000117525.1 ENSMUSG00000117525 ENSMUST00000234569 Gm50034 antisense Interval_5027 chr1 84385972 84386435 + 0 NA intron (ENSMUSG00000036766.12, intron 11 of 12) protein_coding-intron (ENSMUSG00000036766.12, intron 11 of 12) 9196 ENSMUSG00000104396.1 ENSMUSG00000104396 ENSMUST00000191700 Gm37959 TEC Interval_66977 chr16 38966671 38967134 + 0 NA TTS (ENSMUSG00000086175.2) antisense-TTS (ENSMUSG00000086175.2) 39693 ENSMUSG00000089607.1 ENSMUSG00000089607 ENSMUST00000158982 Gm22500 snRNA Interval_72348 chr17 29347307 29348338 + 0 NA promoter-TSS (ENSMUSG00000024012.18) protein_coding-promoter-TSS (ENSMUSG00000024012.18) -10684 ENSMUSG00000024012.18 ENSMUSG00000024012 ENSMUST00000132753 Mtch1 protein_coding Interval_20995 chr10 123106929 123107297 + 0 NA exon (ENSMUSG00000020124.10, exon 22 of 22) protein_coding-exon (ENSMUSG00000020124.10, exon 22 of 22) 71571 ENSMUSG00000112879.1 ENSMUSG00000112879 ENSMUST00000219693 Gm47726 processed_pseudogene Interval_72539 chr17 30590292 30591386 + 0 NA promoter-TSS (ENSMUSG00000118053.1) TEC-promoter-TSS (ENSMUSG00000118053.1) -669 ENSMUSG00000118053.1 ENSMUSG00000118053 ENSMUST00000237205 Gm50244 TEC Interval_131459 chr5 137368293 137368864 + 0 NA intron (ENSMUSG00000029710.15, intron 13 of 17) protein_coding-intron (ENSMUSG00000029710.15, intron 12 of 16) 18148 ENSMUSG00000029710.15 ENSMUSG00000029710 ENSMUST00000111054 Ephb4 protein_coding Interval_66779 chr16 37559529 37559858 + 0 NA intron (ENSMUSG00000022827.14, intron 3 of 7) protein_coding-intron (ENSMUSG00000022827.14, intron 3 of 7) -4041 ENSMUSG00000022827.14 ENSMUSG00000022827 ENSMUST00000140799 Rabl3 protein_coding Interval_165672 chr9 50845608 50846172 + 0 NA intron (ENSMUSG00000032058.14, intron 1 of 3) protein_coding-intron (ENSMUSG00000032058.14, intron 1 of 3) -27122 ENSMUSG00000032058.14 ENSMUSG00000032058 ENSMUST00000176414 Ppp2r1b protein_coding Interval_38460 chr12 79193597 79193809 + 0 NA Intergenic Intergenic -1410 ENSMUSG00000066441.14 ENSMUSG00000066441 ENSMUST00000159500 Rdh11 protein_coding Interval_140161 chr6 114936682 114936933 + 0 NA intron (ENSMUSG00000030315.15, intron 2 of 5) protein_coding-intron (ENSMUSG00000030315.15, intron 2 of 4) -14991 ENSMUSG00000030315.15 ENSMUSG00000030315 ENSMUST00000204693 Vgll4 protein_coding Interval_96610 chr2 126510590 126511548 + 0 NA Intergenic Intergenic -11080 ENSMUSG00000060131.11 ENSMUSG00000060131 ENSMUST00000129187 Atp8b4 protein_coding Interval_38060 chr12 75412841 75413474 + 0 NA intron (ENSMUSG00000048982.3, intron 2 of 2) protein_coding-intron (ENSMUSG00000048982.3, intron 2 of 2) 3624 ENSMUSG00000048982.3 ENSMUSG00000048982 ENSMUST00000051079 Gphb5 protein_coding Interval_167452 chr9 69467608 69467889 + 0 NA intron (ENSMUSG00000032231.14, intron 3 of 6) protein_coding-intron (ENSMUSG00000032231.14, intron 3 of 12) 10804 ENSMUSG00000093042.1 ENSMUSG00000093042 ENSMUST00000175301 Mir3109 miRNA Interval_116612 chr4 116052821 116054350 + 0 NA promoter-TSS (ENSMUSG00000028706.14) protein_coding-promoter-TSS (ENSMUSG00000028706.14) -205 ENSMUSG00000028706.14 ENSMUSG00000028706 ENSMUST00000151720 Nsun4 protein_coding Interval_155791 chr8 37916112 37916884 + 0 NA intron (ENSMUSG00000039539.13, intron 2 of 9) protein_coding-intron (ENSMUSG00000039539.13, intron 2 of 7) -127806 ENSMUSG00000081316.1 ENSMUSG00000081316 ENSMUST00000117720 Gm16205 processed_pseudogene Interval_166909 chr9 63875343 63877513 + 0 NA Intergenic Intergenic -21837 ENSMUSG00000110768.1 ENSMUSG00000110768 ENSMUST00000215935 Gm18541 processed_pseudogene Interval_82778 chr18 77032975 77033716 + 0 NA intron (ENSMUSG00000025420.13, intron 1 of 5) protein_coding-intron (ENSMUSG00000025420.13, intron 1 of 13) 13942 ENSMUSG00000025420.13 ENSMUSG00000025420 ENSMUST00000123650 Katnal2 protein_coding Interval_144853 chr7 28616110 28617387 + 0 NA intron (ENSMUSG00000037469.11, intron 3 of 12) protein_coding-intron (ENSMUSG00000037469.11, intron 3 of 12) -12500 ENSMUSG00000108905.1 ENSMUSG00000108905 ENSMUST00000208431 Gm44618 lincRNA Interval_108894 chr3 133063006 133063970 + 0 NA intron (ENSMUSG00000028018.15, intron 4 of 9) protein_coding-intron (ENSMUSG00000028018.15, intron 4 of 11) -9218 ENSMUSG00000105217.1 ENSMUSG00000105217 ENSMUST00000196110 Gm42873 TEC Interval_155278 chr8 30524319 30524850 + 0 NA Intergenic Intergenic -10773 ENSMUSG00000110223.1 ENSMUSG00000110223 ENSMUST00000211753 Gm45489 lincRNA Interval_118617 chr4 132792729 132793022 + 0 NA intron (ENSMUSG00000037731.5, intron 1 of 5) protein_coding-intron (ENSMUSG00000037731.5, intron 1 of 5) 3512 ENSMUSG00000037731.5 ENSMUSG00000037731 ENSMUST00000045154 Themis2 protein_coding Interval_138893 chr6 93066189 93067105 + 0 NA intron (ENSMUSG00000097462.7, intron 2 of 3) antisense-intron (ENSMUSG00000097462.7, intron 1 of 9) -12461 ENSMUSG00000108286.1 ENSMUSG00000108286 ENSMUST00000204131 Gm44224 TEC Interval_4521 chr1 74781317 74781527 + 0 NA intron (ENSMUSG00000033227.7, intron 1 of 3) protein_coding-intron (ENSMUSG00000033227.7, intron 1 of 3) -1017 ENSMUSG00000033227.7 ENSMUSG00000033227 ENSMUST00000189544 Wnt6 protein_coding Interval_100492 chr2 169589389 169590648 + 0 NA Intergenic Intergenic -2273 ENSMUSG00000078912.2 ENSMUSG00000078912 ENSMUST00000109160 Gm11011 protein_coding Interval_169586 chr9 99303751 99304066 + 0 NA intron (ENSMUSG00000100281.1, intron 1 of 1) antisense-intron (ENSMUSG00000100281.1, intron 1 of 1) 767 ENSMUSG00000100281.1 ENSMUSG00000100281 ENSMUST00000191492 4930422M22Rik antisense Interval_100851 chr2 172889594 172890355 + 0 NA intron (ENSMUSG00000008999.7, intron 3 of 6) protein_coding-intron (ENSMUSG00000008999.7, intron 3 of 6) -25633 ENSMUSG00000093160.1 ENSMUSG00000093160 ENSMUST00000175419 Gm22773 miRNA Interval_25986 chr11 53329709 53330956 + 0 NA intron (ENSMUSG00000018239.9, intron 1 of 3) protein_coding-intron (ENSMUSG00000018239.9, intron 2 of 3) 2932 ENSMUSG00000018239.9 ENSMUSG00000018239 ENSMUST00000141585 Zcchc10 protein_coding Interval_763 chr1 10798744 10799124 + 0 NA Intergenic Intergenic -6347 ENSMUSG00000100212.1 ENSMUSG00000100212 ENSMUST00000189483 Gm5522 processed_pseudogene Interval_156707 chr8 57498561 57499492 + 0 NA intron (ENSMUSG00000096917.2, intron 2 of 2) processed_transcript-intron (ENSMUSG00000096917.2, intron 2 of 2) -6789 ENSMUSG00000096917.2 ENSMUSG00000096917 ENSMUST00000210752 2500002B13Rik processed_transcript Interval_130226 chr5 125066921 125067515 + 0 NA intron (ENSMUSG00000029478.16, intron 16 of 47) protein_coding-intron (ENSMUSG00000029478.16, intron 15 of 45) 9377 ENSMUSG00000105604.1 ENSMUSG00000105604 ENSMUST00000196503 Gm42838 antisense Interval_116602 chr4 115992457 115993120 + 0 NA intron (ENSMUSG00000034171.13, intron 13 of 14) protein_coding-intron (ENSMUSG00000034171.13, intron 13 of 14) 7149 ENSMUSG00000034171.13 ENSMUSG00000034171 ENSMUST00000150614 Faah protein_coding Interval_62878 chr15 97667371 97668766 + 0 NA Intergenic Intergenic 12285 ENSMUSG00000022466.6 ENSMUSG00000022466 ENSMUST00000229008 Rpap3 protein_coding Interval_73177 chr17 35280006 35280838 + 0 NA Intergenic Intergenic -1191 ENSMUSG00000092444.1 ENSMUSG00000092444 ENSMUST00000173950 Gm18733 transcribed_unprocessed_pseudogene Interval_135407 chr6 39144260 39144911 + 0 NA intron (ENSMUSG00000042599.8, intron 9 of 10) protein_coding-intron (ENSMUSG00000042599.8, intron 18 of 19) 10097 ENSMUSG00000042599.8 ENSMUSG00000042599 ENSMUST00000127036 Kdm7a protein_coding Interval_3469 chr1 58646228 58646628 + 0 NA promoter-TSS (ENSMUSG00000059647.5) processed_pseudogene-promoter-TSS (ENSMUSG00000059647.5) -260 ENSMUSG00000059647.5 ENSMUSG00000059647 ENSMUST00000081455 Cbx3-ps7 processed_pseudogene Interval_12631 chr10 4036933 4037822 + 0 NA intron (ENSMUSG00000040675.17, intron 3 of 6) protein_coding-intron (ENSMUSG00000040675.17, intron 16 of 27) 5097 ENSMUSG00000040675.17 ENSMUSG00000040675 ENSMUST00000154517 Mthfd1l protein_coding Interval_90042 chr2 27486552 27487618 + 0 NA intron (ENSMUSG00000026918.16, intron 1 of 11) protein_coding-intron (ENSMUSG00000026918.16, intron 1 of 11) -22969 ENSMUSG00000026918.16 ENSMUSG00000026918 ENSMUST00000126059 Brd3 protein_coding Interval_163297 chr9 20671755 20672983 + 0 NA TTS (ENSMUSG00000032172.8) protein_coding-TTS (ENSMUSG00000032172.8) 20274 ENSMUSG00000032171.7 ENSMUSG00000032171 ENSMUST00000034689 Pin1 protein_coding Interval_92555 chr2 60612997 60614071 + 0 NA intron (ENSMUSG00000026971.15, intron 13 of 14) protein_coding-intron (ENSMUSG00000026971.15, intron 15 of 17) -17240 ENSMUSG00000083195.1 ENSMUSG00000083195 ENSMUST00000118026 Gm13567 processed_pseudogene Interval_94492 chr2 91642700 91644289 + 0 NA TTS (ENSMUSG00000075040.9) protein_coding-TTS (ENSMUSG00000075040.9) -1572 ENSMUSG00000083832.1 ENSMUSG00000083832 ENSMUST00000117988 Gm13771 processed_pseudogene Interval_9475 chr1 157501363 157502039 + 0 NA intron (ENSMUSG00000087093.2, intron 2 of 2) antisense-intron (ENSMUSG00000087093.2, intron 2 of 2) 10020 ENSMUSG00000087093.2 ENSMUSG00000087093 ENSMUST00000135147 Gm15486 antisense Interval_145851 chr7 40391746 40392364 + 0 NA intron (ENSMUSG00000100650.1, intron 2 of 2) lincRNA-intron (ENSMUSG00000100650.1, intron 2 of 2) 28605 ENSMUSG00000087914.1 ENSMUSG00000087914 ENSMUST00000157289 Gm24910 misc_RNA Interval_75356 chr17 66093879 66094366 + 0 NA promoter-TSS (ENSMUSG00000117321.1) processed_pseudogene-promoter-TSS (ENSMUSG00000117321.1) -811 ENSMUSG00000117321.1 ENSMUSG00000117321 ENSMUST00000233843 Gm49927 processed_pseudogene Interval_30598 chr11 95354037 95354838 + 0 NA intron (ENSMUSG00000038893.12, intron 3 of 5) protein_coding-intron (ENSMUSG00000038893.12, intron 1 of 7) -17029 ENSMUSG00000085509.1 ENSMUSG00000085509 ENSMUST00000143302 Gm11521 antisense Interval_128486 chr5 113600100 113600755 + 0 NA Intergenic Intergenic 21639 ENSMUSG00000063430.9 ENSMUSG00000063430 ENSMUST00000198673 Wscd2 protein_coding Interval_118645 chr4 132960589 132961429 + 0 NA Intergenic Intergenic -16107 ENSMUSG00000028874.14 ENSMUSG00000028874 ENSMUST00000171223 Fgr protein_coding Interval_44648 chr13 46920213 46920472 + 0 NA intron (ENSMUSG00000021375.11, intron 2 of 2) protein_coding-intron (ENSMUSG00000021375.11, intron 2 of 37) 17753 ENSMUSG00000084466.1 ENSMUSG00000084466 ENSMUST00000122517 Gm22960 snRNA Interval_8267 chr1 136846154 136846363 + 0 NA intron (ENSMUSG00000026398.14, intron 8 of 8) protein_coding-intron (ENSMUSG00000026398.14, intron 8 of 8) -47299 ENSMUSG00000104261.1 ENSMUSG00000104261 ENSMUST00000195232 Gm17781 processed_pseudogene Interval_66707 chr16 36500321 36500612 + 0 NA intron (ENSMUSG00000051980.13, intron 4 of 6) protein_coding-intron (ENSMUSG00000051980.13, intron 4 of 6) 12184 ENSMUSG00000089118.1 ENSMUSG00000089118 ENSMUST00000158493 Gm25902 misc_RNA Interval_120859 chr4 151090911 151091133 + 0 NA intron (ENSMUSG00000078491.2, intron 3 of 3) protein_coding-intron (ENSMUSG00000014592.21, intron 11 of 23) 1452 ENSMUSG00000078491.2 ENSMUSG00000078491 ENSMUST00000105667 Gm13090 protein_coding Interval_1863 chr1 34191802 34192641 + 0 NA exon (ENSMUSG00000026131.20, exon 36 of 98) protein_coding-exon (ENSMUSG00000026131.20, exon 36 of 98) -13775 ENSMUSG00000096992.3 ENSMUSG00000096992 ENSMUST00000187268 Gm26788 processed_transcript Interval_24217 chr11 31591285 31592695 + 0 NA Intergenic Intergenic 79737 ENSMUSG00000044502.16 ENSMUSG00000044502 ENSMUST00000109415 Bod1 protein_coding Interval_48593 chr13 100566898 100567158 + 0 NA Intergenic Intergenic -6996 ENSMUSG00000114332.1 ENSMUSG00000114332 ENSMUST00000223825 Gm8847 processed_pseudogene Interval_173170 chrX 73774179 73776394 + 0 NA intron (ENSMUSG00000002007.5, intron 4 of 10) protein_coding-intron (ENSMUSG00000002007.5, intron 4 of 14) -2692 ENSMUSG00000002007.5 ENSMUSG00000002007 ENSMUST00000139630 Srpk3 protein_coding Interval_134598 chr6 29852949 29854331 + 0 NA promoter-TSS (ENSMUSG00000029772.17) protein_coding-promoter-TSS (ENSMUSG00000029772.17) -23039 ENSMUSG00000029772.17 ENSMUSG00000029772 ENSMUST00000128837 Ahcyl2 protein_coding Interval_86931 chr19 44976837 44977376 + 0 NA intron (ENSMUSG00000036097.8, intron 14 of 15) protein_coding-intron (ENSMUSG00000036097.8, intron 18 of 19) 7423 ENSMUSG00000118204.1 ENSMUSG00000118204 ENSMUST00000236202 4930414N06Rik antisense Interval_152605 chr7 135131319 135131560 + 0 NA TTS (ENSMUSG00000077150.1) snoRNA-TTS (ENSMUSG00000077150.1) 207 ENSMUSG00000077150.1 ENSMUSG00000077150 ENSMUST00000103962 Gm24581 snoRNA Interval_159760 chr8 101444084 101444307 + 0 NA Intergenic Intergenic 95513 ENSMUSG00000087985.1 ENSMUSG00000087985 ENSMUST00000157360 Gm22223 snoRNA Interval_22010 chr11 5761709 5763167 + 0 NA promoter-TSS (ENSMUSG00000049680.17) protein_coding-promoter-TSS (ENSMUSG00000049680.17) -62 ENSMUSG00000049680.17 ENSMUSG00000049680 ENSMUST00000140922 Urgcp protein_coding Interval_26453 chr11 57950968 57951169 + 0 NA Intergenic Intergenic -1983 ENSMUSG00000083657.1 ENSMUSG00000083657 ENSMUST00000117266 Gm12245 processed_pseudogene Interval_143814 chr7 16465221 16465571 + 0 NA exon (ENSMUSG00000001988.9, exon 4 of 12) protein_coding-exon (ENSMUSG00000001988.9, exon 4 of 12) -6417 ENSMUSG00000065893.1 ENSMUSG00000065893 ENSMUST00000083959 n-R5s151 rRNA Interval_1237 chr1 17903438 17904301 + 0 NA Intergenic Intergenic -43172 ENSMUSG00000100554.1 ENSMUSG00000100554 ENSMUST00000190885 Gm7690 processed_pseudogene Interval_136088 chr6 50690345 50690926 + 0 NA Intergenic Intergenic -36196 ENSMUSG00000029831.7 ENSMUSG00000029831 ENSMUST00000031853 Npvf protein_coding Interval_91369 chr2 38333334 38333934 + 0 NA Intergenic Intergenic 14682 ENSMUSG00000098383.1 ENSMUSG00000098383 ENSMUST00000184325 Gm27197 antisense Interval_5380 chr1 88165140 88166637 + 0 NA promoter-TSS (ENSMUSG00000089943.1) protein_coding-promoter-TSS (ENSMUSG00000089943.1) -124 ENSMUSG00000089943.1 ENSMUSG00000089943 ENSMUST00000097659 Ugt1a5 protein_coding Interval_53297 chr14 55861718 55864216 + 0 NA exon (ENSMUSG00000075592.10, exon 3 of 9) protein_coding-exon (ENSMUSG00000075592.10, exon 3 of 9) 8957 ENSMUSG00000075592.10 ENSMUSG00000075592 ENSMUST00000100529 Nynrin protein_coding Interval_22006 chr11 5734353 5735744 + 0 NA intron (ENSMUSG00000049680.17, intron 1 of 6) protein_coding-intron (ENSMUSG00000049680.17, intron 1 of 4) -27102 ENSMUSG00000083844.8 ENSMUSG00000083844 ENSMUST00000135394 Ube2d-ps transcribed_unprocessed_pseudogene Interval_78339 chr18 12058337 12059541 + 0 NA exon (ENSMUSG00000049411.15, exon 9 of 13) protein_coding-exon (ENSMUSG00000049411.15, exon 9 of 13) 62541 ENSMUSG00000049411.15 ENSMUSG00000049411 ENSMUST00000234833 Tmem241 protein_coding Interval_22935 chr11 17599528 17600388 + 0 NA Intergenic Intergenic 39225 ENSMUSG00000082411.1 ENSMUSG00000082411 ENSMUST00000119079 Gm12016 processed_pseudogene Interval_149241 chr7 96582083 96582334 + 0 NA intron (ENSMUSG00000048078.16, intron 5 of 32) protein_coding-intron (ENSMUSG00000048078.16, intron 6 of 32) 46861 ENSMUSG00000085792.2 ENSMUSG00000085792 ENSMUST00000155217 Gm15414 antisense Interval_78920 chr18 21625692 21626190 + 0 NA intron (ENSMUSG00000042514.11, intron 2 of 8) protein_coding-intron (ENSMUSG00000042514.11, intron 1 of 7) -25507 ENSMUSG00000043168.12 ENSMUSG00000043168 ENSMUST00000139804 4930426D05Rik antisense Interval_130275 chr5 125360739 125361543 + 0 NA promoter-TSS (ENSMUSG00000104932.1) lincRNA-promoter-TSS (ENSMUSG00000104932.1) -34 ENSMUSG00000104932.1 ENSMUSG00000104932 ENSMUST00000200649 Gm40323 lincRNA Interval_127829 chr5 108076200 108077999 + 0 NA intron (ENSMUSG00000029267.17, intron 1 of 3) protein_coding-intron (ENSMUSG00000029267.17, intron 1 of 14) 11382 ENSMUSG00000029267.17 ENSMUSG00000029267 ENSMUST00000129921 Mtf2 protein_coding Interval_68184 chr16 67106688 67106921 + 0 NA intron (ENSMUSG00000064115.13, intron 1 of 9) protein_coding-intron (ENSMUSG00000064115.13, intron 1 of 9) 131546 ENSMUSG00000116904.1 ENSMUSG00000116904 ENSMUST00000232322 Gm49640 processed_pseudogene Interval_128345 chr5 112645518 112648112 + 0 NA Intergenic Intergenic -2552 ENSMUSG00000105152.1 ENSMUSG00000105152 ENSMUST00000198371 Gm42864 lincRNA Interval_92384 chr2 59407402 59408579 + 0 NA Intergenic Intergenic -8209 ENSMUSG00000080982.1 ENSMUSG00000080982 ENSMUST00000118339 Gm13549 processed_pseudogene Interval_128998 chr5 116542419 116543246 + 0 NA intron (ENSMUSG00000063919.11, intron 1 of 12) protein_coding-intron (ENSMUSG00000063919.11, intron 1 of 12) 30663 ENSMUSG00000106914.1 ENSMUSG00000106914 ENSMUST00000201262 Gm42854 sense_intronic Interval_55337 chr14 83682705 83683112 + 0 NA Intergenic Intergenic -69740 ENSMUSG00000115780.1 ENSMUSG00000115780 ENSMUST00000226600 Gm49053 processed_pseudogene Interval_114076 chr4 63149669 63150445 + 0 NA intron (ENSMUSG00000028356.4, intron 4 of 9) protein_coding-intron (ENSMUSG00000028356.4, intron 4 of 9) 4742 ENSMUSG00000028356.4 ENSMUSG00000028356 ENSMUST00000142901 Ambp protein_coding Interval_54408 chr14 68696021 68696317 + 0 NA Intergenic Intergenic -35785 ENSMUSG00000114641.1 ENSMUSG00000114641 ENSMUST00000224710 Gm46476 processed_pseudogene Interval_42477 chr13 13989141 13991038 + 0 NA intron (ENSMUSG00000039242.10, intron 5 of 10) protein_coding-intron (ENSMUSG00000039242.10, intron 6 of 11) -18752 ENSMUSG00000096192.2 ENSMUSG00000096192 ENSMUST00000221021 Gm18856 transcribed_processed_pseudogene Interval_80548 chr18 43835643 43836608 + 0 NA Intergenic Intergenic -3971 ENSMUSG00000117902.1 ENSMUSG00000117902 ENSMUST00000237459 Gm41715 lincRNA Interval_70341 chr17 8658535 8659733 + 0 NA intron (ENSMUSG00000023868.17, intron 1 of 3) protein_coding-intron (ENSMUSG00000023868.17, intron 1 of 21) -90274 ENSMUSG00000084390.1 ENSMUSG00000084390 ENSMUST00000119013 Gm15425 processed_pseudogene Interval_163175 chr9 16866479 16866897 + 0 NA Intergenic Intergenic -163357 ENSMUSG00000090602.3 ENSMUSG00000090602 ENSMUST00000164523 Gm5611 processed_pseudogene Interval_131753 chr5 139668303 139671326 + 0 NA Intergenic Intergenic -31833 ENSMUSG00000104637.1 ENSMUSG00000104637 ENSMUST00000198319 Gm42424 processed_pseudogene Interval_48422 chr13 98917833 98918550 + 0 NA intron (ENSMUSG00000009470.17, intron 1 of 6) protein_coding-intron (ENSMUSG00000009470.17, intron 1 of 23) 13967 ENSMUSG00000062461.7 ENSMUSG00000062461 ENSMUST00000080866 Rpl27a-ps4 processed_pseudogene Interval_119982 chr4 141219395 141220908 + 0 NA TTS (ENSMUSG00000073733.4) protein_coding-TTS (ENSMUSG00000073733.4) 1505 ENSMUSG00000073733.4 ENSMUSG00000073733 ENSMUST00000151475 Cplane2 protein_coding Interval_42017 chr13 6554705 6555055 + 0 NA intron (ENSMUSG00000021193.10, intron 4 of 4) protein_coding-intron (ENSMUSG00000021193.10, intron 4 of 25) -12123 ENSMUSG00000021193.10 ENSMUSG00000021193 ENSMUST00000222061 Pitrm1 protein_coding Interval_94411 chr2 90837907 90838345 + 0 NA Intergenic Intergenic -9105 ENSMUSG00000027282.17 ENSMUSG00000027282 ENSMUST00000142350 Mtch2 protein_coding Interval_144692 chr7 27562839 27563270 + 0 NA intron (ENSMUSG00000049643.15, intron 2 of 6) protein_coding-intron (ENSMUSG00000049643.15, intron 3 of 9) 9787 ENSMUSG00000049643.15 ENSMUSG00000049643 ENSMUST00000186501 2310022A10Rik protein_coding Interval_81414 chr18 60623225 60624662 + 0 NA promoter-TSS (ENSMUSG00000043079.17) protein_coding-promoter-TSS (ENSMUSG00000043079.17) 319 ENSMUSG00000043079.17 ENSMUSG00000043079 ENSMUST00000139236 Synpo protein_coding Interval_53838 chr14 62496194 62496443 + 0 NA intron (ENSMUSG00000100486.7, intron 2 of 3) protein_coding-intron (ENSMUSG00000100486.7, intron 2 of 3) 18977 ENSMUSG00000114292.1 ENSMUSG00000114292 ENSMUST00000224336 Gm6076 processed_pseudogene Interval_135579 chr6 40762859 40763163 + 0 NA intron (ENSMUSG00000068587.10, intron 88 of 92) protein_coding-intron (ENSMUSG00000068587.10, intron 43 of 47) -15700 ENSMUSG00000102802.3 ENSMUSG00000102802 ENSMUST00000195870 Mgam2-ps protein_coding Interval_64508 chr16 12878466 12879534 + 0 NA intron (ENSMUSG00000116520.1, intron 1 of 11) lincRNA-intron (ENSMUSG00000116520.1, intron 1 of 11) 66935 ENSMUSG00000116520.1 ENSMUSG00000116520 ENSMUST00000230696 4930414F18Rik lincRNA Interval_43126 chr13 24480793 24482155 + 0 NA Intergenic Intergenic 5290 ENSMUSG00000089413.1 ENSMUSG00000089413 ENSMUST00000158788 Gm22013 snRNA Interval_72718 chr17 31734319 31735113 + 0 NA Intergenic Intergenic -44291 ENSMUSG00000117656.1 ENSMUSG00000117656 ENSMUST00000237283 Gm50225 lincRNA Interval_73342 chr17 36308619 36309528 + 0 NA Intergenic Intergenic 17072 ENSMUSG00000024448.14 ENSMUSG00000024448 ENSMUST00000172576 H2-M10.1 protein_coding Interval_7883 chr1 134361187 134362561 + 0 NA promoter-TSS (ENSMUSG00000042305.12) protein_coding-promoter-TSS (ENSMUSG00000042305.12) 67 ENSMUSG00000042305.12 ENSMUSG00000042305 ENSMUST00000185903 Tmem183a protein_coding Interval_13174 chr10 12812851 12813972 + 0 NA exon (ENSMUSG00000019820.11, exon 1 of 1) protein_coding-exon (ENSMUSG00000019820.11, exon 1 of 1) -19437 ENSMUSG00000088516.1 ENSMUSG00000088516 ENSMUST00000157891 Gm23044 snRNA Interval_57313 chr15 8689858 8690667 + 0 NA intron (ENSMUSG00000005360.14, intron 2 of 4) protein_coding-intron (ENSMUSG00000005360.14, intron 2 of 9) 20147 ENSMUSG00000005360.14 ENSMUSG00000005360 ENSMUST00000126747 Slc1a3 protein_coding Interval_3083 chr1 53032552 53033149 + 0 NA Intergenic Intergenic -12671 ENSMUSG00000043629.12 ENSMUSG00000043629 ENSMUST00000190726 1700019D03Rik protein_coding Interval_135599 chr6 41189566 41189753 + 0 NA TTS (ENSMUSG00000076476.1) TR_V_gene-TTS (ENSMUSG00000076476.1) 1386 ENSMUSG00000076476.1 ENSMUSG00000076476 ENSMUST00000103277 Trbv20 TR_V_gene Interval_135525 chr6 39960855 39961115 + 0 NA intron (ENSMUSG00000057716.7, intron 1 of 3) protein_coding-intron (ENSMUSG00000057716.7, intron 1 of 3) -65909 ENSMUSG00000103331.1 ENSMUSG00000103331 ENSMUST00000194958 Gm37995 TEC Interval_124150 chr5 38684205 38685171 + 0 NA promoter-TSS (ENSMUSG00000046572.10) protein_coding-promoter-TSS (ENSMUSG00000046572.10) 138 ENSMUSG00000046572.10 ENSMUSG00000046572 ENSMUST00000178760 Zfp518b protein_coding Interval_152921 chr7 139748098 139748918 + 0 NA Intergenic Intergenic -26206 ENSMUSG00000109905.1 ENSMUSG00000109905 ENSMUST00000211599 Gm7380 processed_pseudogene Interval_43852 chr13 37581386 37581624 + 0 NA promoter-TSS (ENSMUSG00000114718.1) processed_pseudogene-promoter-TSS (ENSMUSG00000114718.1) 428 ENSMUSG00000114784.1 ENSMUSG00000114784 ENSMUST00000223604 Gm47754 lincRNA Interval_6358 chr1 106261581 106261888 + 0 NA intron (ENSMUSG00000044340.7, intron 1 of 16) protein_coding-intron (ENSMUSG00000044340.7, intron 1 of 16) -19691 ENSMUSG00000044340.7 ENSMUSG00000044340 ENSMUST00000124895 Phlpp1 protein_coding Interval_149782 chr7 101426879 101428357 + 0 NA intron (ENSMUSG00000110195.1, intron 1 of 30) protein_coding-intron (ENSMUSG00000030653.17, intron 1 of 31) 5909 ENSMUSG00000110195.1 ENSMUSG00000110195 ENSMUST00000209315 Pde2a protein_coding Interval_140643 chr6 120286913 120287615 + 0 NA intron (ENSMUSG00000041372.10, intron 1 of 19) protein_coding-intron (ENSMUSG00000041372.10, intron 1 of 19) 7295 ENSMUSG00000041372.10 ENSMUSG00000041372 ENSMUST00000212457 B4galnt3 protein_coding Interval_157296 chr8 69106918 69107639 + 0 NA TTS (ENSMUSG00000006273.14) protein_coding-TTS (ENSMUSG00000006273.14) -18043 ENSMUSG00000036330.12 ENSMUSG00000036330 ENSMUST00000142710 Slc18a1 protein_coding Interval_64024 chr16 5473178 5474143 + 0 NA Intergenic Intergenic -149503 ENSMUSG00000084573.1 ENSMUSG00000084573 ENSMUST00000122624 n-R5s30 rRNA Interval_121471 chr4 156015026 156015552 + 0 NA TTS (ENSMUSG00000029075.6) protein_coding-TTS (ENSMUSG00000029075.6) 1433 ENSMUSG00000029075.6 ENSMUSG00000029075 ENSMUST00000127377 Tnfrsf4 protein_coding Interval_72516 chr17 30362140 30362618 + 0 NA intron (ENSMUSG00000062202.14, intron 4 of 7) protein_coding-intron (ENSMUSG00000062202.14, intron 6 of 11) 33654 ENSMUSG00000117962.1 ENSMUSG00000117962 ENSMUST00000235315 Gm6402 processed_pseudogene Interval_77996 chr18 6515912 6516966 + 0 NA promoter-TSS (ENSMUSG00000024240.13) protein_coding-promoter-TSS (ENSMUSG00000024240.13) -25793 ENSMUSG00000084514.1 ENSMUSG00000084514 ENSMUST00000122565 Mir1893 miRNA Interval_128242 chr5 111980155 111981194 + 0 NA Intergenic Intergenic -36439 ENSMUSG00000106060.1 ENSMUSG00000106060 ENSMUST00000197648 Gm42488 lincRNA Interval_72503 chr17 30251935 30252171 + 0 NA intron (ENSMUSG00000062202.14, intron 1 of 2) protein_coding-intron (ENSMUSG00000062202.14, intron 9 of 11) -59026 ENSMUSG00000089222.1 ENSMUSG00000089222 ENSMUST00000158597 Gm25049 snRNA Interval_109093 chr3 135696818 135697295 + 0 NA Intergenic Intergenic -42490 ENSMUSG00000106149.1 ENSMUSG00000106149 ENSMUST00000196513 Gm43430 TEC Interval_161439 chr8 120465808 120466697 + 0 NA intron (ENSMUSG00000031822.20, intron 2 of 2) protein_coding-intron (ENSMUSG00000092329.1, intron 1 of 15) -22703 ENSMUSG00000080549.2 ENSMUSG00000080549 ENSMUST00000116899 Gm22715 miRNA Interval_29895 chr11 87572299 87572758 + 0 NA intron (ENSMUSG00000020486.19, intron 3 of 13) protein_coding-intron (ENSMUSG00000020486.19, intron 1 of 1) 5875 ENSMUSG00000020486.19 ENSMUSG00000020486 ENSMUST00000143950 Septin4 protein_coding Interval_98371 chr2 151903376 151904412 + 0 NA Intergenic Intergenic -7316 ENSMUSG00000027460.7 ENSMUSG00000027460 ENSMUST00000028955 Angpt4 protein_coding Interval_60908 chr15 77782327 77783047 + 0 NA intron (ENSMUSG00000022443.17, intron 15 of 40) protein_coding-intron (ENSMUSG00000022443.17, intron 15 of 40) -1554 ENSMUSG00000022443.17 ENSMUSG00000022443 ENSMUST00000134878 Myh9 protein_coding Interval_132085 chr5 142700956 142702689 + 0 NA promoter-TSS (ENSMUSG00000050822.11) protein_coding-promoter-TSS (ENSMUSG00000050822.11) 9310 ENSMUSG00000050822.11 ENSMUSG00000050822 ENSMUST00000058418 Slc29a4 protein_coding Interval_147979 chr7 76185187 76185519 + 0 NA Intergenic Intergenic -44534 ENSMUSG00000025754.11 ENSMUSG00000025754 ENSMUST00000107442 Agbl1 protein_coding Interval_143331 chr7 5472077 5472359 + 0 NA Intergenic Intergenic -16478 ENSMUSG00000117744.1 ENSMUSG00000117744 ENSMUST00000074132 Vmn1r59 protein_coding Interval_162320 chr8 127063314 127065401 + 0 NA promoter-TSS (ENSMUSG00000025812.18) protein_coding-promoter-TSS (ENSMUSG00000025812.18) 17445 ENSMUSG00000088710.1 ENSMUSG00000088710 ENSMUST00000158085 Gm22730 snRNA Interval_86632 chr19 42166077 42166398 + 0 NA intron (ENSMUSG00000018820.13, intron 1 of 2) protein_coding-intron (ENSMUSG00000018820.13, intron 1 of 2) 6568 ENSMUSG00000117856.1 ENSMUSG00000117856 ENSMUST00000235531 Gm6937 processed_pseudogene Interval_131435 chr5 137179213 137180221 + 0 NA Intergenic Intergenic -2674 ENSMUSG00000118522.1 ENSMUSG00000118522 ENSMUST00000239135 CAAA01077340.1 protein_coding Interval_115882 chr4 105625083 105625955 + 0 NA Intergenic Intergenic 47179 ENSMUSG00000082061.1 ENSMUSG00000082061 ENSMUST00000121621 Gm12726 processed_pseudogene Interval_50379 chr14 12276057 12276638 + 0 NA Intergenic Intergenic -7629 ENSMUSG00000114378.1 ENSMUSG00000114378 ENSMUST00000225871 Gm49355 protein_coding Interval_35062 chr12 16980903 16981153 + 0 NA TTS (ENSMUSG00000020580.10) protein_coding-TTS (ENSMUSG00000020580.10) 7947 ENSMUSG00000020580.10 ENSMUSG00000020580 ENSMUST00000221463 Rock2 protein_coding Interval_75735 chr17 70929074 70929452 + 0 NA exon (ENSMUSG00000066983.6, exon 1 of 1) processed_pseudogene-exon (ENSMUSG00000066983.6, exon 1 of 1) 205 ENSMUSG00000066983.6 ENSMUSG00000066983 ENSMUST00000092011 Gm16519 processed_pseudogene Interval_24195 chr11 31163645 31163840 + 0 NA Intergenic Intergenic 18720 ENSMUSG00000091195.1 ENSMUSG00000091195 ENSMUST00000165626 Gm17332 protein_coding Interval_31761 chr11 102696741 102698357 + 0 NA promoter-TSS (ENSMUSG00000020925.16) protein_coding-promoter-TSS (ENSMUSG00000020925.16) 185 ENSMUSG00000020925.16 ENSMUSG00000020925 ENSMUST00000138147 Ccdc43 protein_coding Interval_95514 chr2 110949769 110950593 + 0 NA exon (ENSMUSG00000074968.11, exon 1 of 27) protein_coding-exon (ENSMUSG00000074968.11, exon 1 of 27) 107393 ENSMUSG00000079171.3 ENSMUSG00000079171 ENSMUST00000136950 Gm13942 lincRNA Interval_161509 chr8 120820865 120821969 + 0 NA intron (ENSMUSG00000092329.1, intron 1 of 15) protein_coding-intron (ENSMUSG00000092329.1, intron 1 of 15) -58789 ENSMUSG00000097087.1 ENSMUSG00000097087 ENSMUST00000181778 Gm26878 lincRNA Interval_110963 chr4 10904885 10906421 + 0 NA Intergenic Intergenic 31088 ENSMUSG00000059482.15 ENSMUSG00000059482 ENSMUST00000142026 2610301B20Rik protein_coding Interval_94312 chr2 88240892 88241618 + 0 NA Intergenic Intergenic -12921 ENSMUSG00000075133.2 ENSMUSG00000075133 ENSMUST00000099831 Olfr1170 protein_coding Interval_20648 chr10 119978468 119980342 + 0 NA intron (ENSMUSG00000034813.18, intron 8 of 20) protein_coding-intron (ENSMUSG00000034813.18, intron 9 of 22) -127128 ENSMUSG00000085418.1 ENSMUSG00000085418 ENSMUST00000135940 Grip1os1 antisense Interval_26635 chr11 59373518 59373881 + 0 NA intron (ENSMUSG00000049291.6, intron 3 of 4) protein_coding-intron (ENSMUSG00000049291.6, intron 3 of 4) -1762 ENSMUSG00000086910.1 ENSMUSG00000086910 ENSMUST00000133698 Gm15755 antisense Interval_118510 chr4 132180399 132182786 + 0 NA Intergenic Intergenic 29217 ENSMUSG00000040025.17 ENSMUSG00000040025 ENSMUST00000102570 Ythdf2 protein_coding Interval_117251 chr4 121016560 121017947 + 0 NA promoter-TSS (ENSMUSG00000032870.8) protein_coding-promoter-TSS (ENSMUSG00000032870.8) -22495 ENSMUSG00000028626.5 ENSMUSG00000028626 ENSMUST00000140119 Col9a2 protein_coding Interval_106755 chr3 100482361 100482776 + 0 NA intron (ENSMUSG00000044468.14, intron 1 of 1) protein_coding-intron (ENSMUSG00000044468.14, intron 1 of 1) 6626 ENSMUSG00000044468.14 ENSMUSG00000044468 ENSMUST00000061455 Tent5c protein_coding Interval_53882 chr14 63108291 63108733 + 0 NA Intergenic Intergenic 8976 ENSMUSG00000064399.1 ENSMUSG00000064399 ENSMUST00000082465 Gm23629 snRNA Interval_106553 chr3 97183951 97185738 + 0 NA Intergenic Intergenic 25748 ENSMUSG00000028093.15 ENSMUSG00000028093 ENSMUST00000198329 Acp6 protein_coding Interval_120844 chr4 150989911 150990614 + 0 NA intron (ENSMUSG00000014592.21, intron 24 of 24) protein_coding-intron (ENSMUSG00000014592.21, intron 24 of 24) -6835 ENSMUSG00000028963.1 ENSMUSG00000028963 ENSMUST00000030803 Uts2 protein_coding Interval_153774 chr8 8334696 8335447 + 0 NA promoter-TSS (ENSMUSG00000109056.1) lincRNA-promoter-TSS (ENSMUSG00000109056.1) -6 ENSMUSG00000109056.1 ENSMUSG00000109056 ENSMUST00000208485 A630009H07Rik lincRNA Interval_120494 chr4 148961160 148962086 + 0 NA exon (ENSMUSG00000028975.16, exon 9 of 9) protein_coding-exon (ENSMUSG00000028975.16, exon 9 of 9) 1263 ENSMUSG00000086740.1 ENSMUSG00000086740 ENSMUST00000153443 Gm17029 antisense Interval_163809 chr9 26717454 26717861 + 0 NA Intergenic Intergenic 13517 ENSMUSG00000110901.1 ENSMUSG00000110901 ENSMUST00000213570 Gm48393 lincRNA Interval_35298 chr12 19994149 19994976 + 0 NA Intergenic Intergenic -8215 ENSMUSG00000113287.1 ENSMUSG00000113287 ENSMUST00000221342 Gm40853 unprocessed_pseudogene Interval_111302 chr4 18156015 18156420 + 0 NA Intergenic Intergenic -37314 ENSMUSG00000083150.1 ENSMUSG00000083150 ENSMUST00000120806 Gm11852 processed_pseudogene Interval_133754 chr6 11605705 11605926 + 0 NA Intergenic Intergenic 301668 ENSMUSG00000029632.7 ENSMUSG00000029632 ENSMUST00000204714 Ndufa4 protein_coding Interval_14566 chr10 35940707 35941015 + 0 NA Intergenic Intergenic -81411 ENSMUSG00000110865.1 ENSMUSG00000110865 ENSMUST00000213320 Gm47046 processed_pseudogene Interval_127732 chr5 107171914 107172195 + 0 NA intron (ENSMUSG00000029287.14, intron 4 of 6) protein_coding-intron (ENSMUSG00000029287.14, intron 4 of 16) -11483 ENSMUSG00000105033.1 ENSMUSG00000105033 ENSMUST00000198390 Gm43423 TEC Interval_76832 chr17 84394149 84394580 + 0 NA intron (ENSMUSG00000024251.10, intron 9 of 14) protein_coding-intron (ENSMUSG00000024251.10, intron 24 of 37) 2935 ENSMUSG00000096415.1 ENSMUSG00000096415 ENSMUST00000179017 Gm24722 snRNA Interval_99549 chr2 163089225 163090282 + 0 NA Intergenic Intergenic -1898 ENSMUSG00000070708.5 ENSMUSG00000070708 ENSMUST00000094653 Gtsf1l protein_coding Interval_72541 chr17 30598341 30598950 + 0 NA TTS (ENSMUSG00000024026.13) protein_coding-TTS (ENSMUSG00000024026.13) -4460 ENSMUSG00000118382.1 ENSMUSG00000118382 ENSMUST00000235258 Gm8373 transcribed_processed_pseudogene Interval_160550 chr8 110604523 110606045 + 0 NA intron (ENSMUSG00000059854.8, intron 85 of 86) protein_coding-intron (ENSMUSG00000059854.8, intron 85 of 86) -40296 ENSMUSG00000010936.11 ENSMUSG00000010936 ENSMUST00000213015 Vac14 protein_coding Interval_153866 chr8 10230662 10231224 + 0 NA intron (ENSMUSG00000039057.11, intron 1 of 16) protein_coding-intron (ENSMUSG00000039057.11, intron 1 of 34) -18345 ENSMUSG00000039057.11 ENSMUSG00000039057 ENSMUST00000042103 Myo16 protein_coding Interval_103649 chr3 51395711 51397122 + 0 NA promoter-TSS (ENSMUSG00000037161.14) protein_coding-promoter-TSS (ENSMUSG00000037161.14) 87 ENSMUSG00000037161.14 ENSMUSG00000037161 ENSMUST00000145938 Mgarp protein_coding Interval_50849 chr14 20192190 20192717 + 0 NA Intergenic Intergenic 7501 ENSMUSG00000114523.1 ENSMUSG00000114523 ENSMUST00000225224 Gm48394 processed_pseudogene Interval_74248 chr17 47710164 47710846 + 0 NA Intergenic Intergenic -9676 ENSMUSG00000086930.1 ENSMUSG00000086930 ENSMUST00000143962 Frs3os antisense Interval_31728 chr11 102492258 102492585 + 0 NA TTS (ENSMUSG00000082487.1) processed_pseudogene-TTS (ENSMUSG00000082487.1) 188 ENSMUSG00000082487.1 ENSMUSG00000082487 ENSMUST00000117568 Gm11628 processed_pseudogene Interval_39202 chr12 85807122 85807389 + 0 NA intron (ENSMUSG00000034258.4, intron 9 of 9) protein_coding-intron (ENSMUSG00000034258.4, intron 9 of 9) 14995 ENSMUSG00000021252.11 ENSMUSG00000021252 ENSMUST00000142331 Erg28 protein_coding Interval_162069 chr8 124854743 124854951 + 0 NA intron (ENSMUSG00000031984.8, intron 2 of 6) protein_coding-intron (ENSMUSG00000031984.8, intron 2 of 6) 8118 ENSMUSG00000031984.8 ENSMUSG00000031984 ENSMUST00000212808 2810004N23Rik protein_coding Interval_115636 chr4 101525803 101526069 + 0 NA intron (ENSMUSG00000028528.17, intron 1 of 2) protein_coding-intron (ENSMUSG00000028528.17, intron 1 of 18) -29159 ENSMUSG00000089446.1 ENSMUSG00000089446 ENSMUST00000158821 Gm22533 misc_RNA Interval_4480 chr1 74449673 74449870 + 0 NA exon (ENSMUSG00000033364.13, exon 20 of 20) protein_coding-exon (ENSMUSG00000033364.13, exon 20 of 20) 26085 ENSMUSG00000026175.12 ENSMUSG00000026175 ENSMUST00000163018 Vil1 protein_coding Interval_110064 chr3 152919258 152919737 + 0 NA promoter-TSS (ENSMUSG00000090017.1) antisense-promoter-TSS (ENSMUSG00000090017.1) -743 ENSMUSG00000090017.1 ENSMUSG00000090017 ENSMUST00000160076 Gm16213 antisense Interval_51572 chr14 30413675 30414541 + 0 NA intron (ENSMUSG00000015968.18, intron 1 of 1) protein_coding-intron (ENSMUSG00000015968.18, intron 1 of 46) -9162 ENSMUSG00000114966.1 ENSMUSG00000114966 ENSMUST00000224520 Gm18681 processed_pseudogene Interval_59961 chr15 62252513 62253106 + 0 NA intron (ENSMUSG00000097039.8, intron 5 of 9) lincRNA-intron (ENSMUSG00000097039.8, intron 5 of 9) -33477 ENSMUSG00000101167.1 ENSMUSG00000101167 ENSMUST00000151919 Macroh2a3 processed_pseudogene Interval_147583 chr7 68556368 68556573 + 0 NA Intergenic Intergenic 42384 ENSMUSG00000109375.1 ENSMUSG00000109375 ENSMUST00000208980 Gm44887 processed_pseudogene Interval_128310 chr5 112473520 112473798 + 0 NA intron (ENSMUSG00000058153.15, intron 2 of 14) protein_coding-intron (ENSMUSG00000058153.15, intron 2 of 16) 24233 ENSMUSG00000072722.2 ENSMUSG00000072722 ENSMUST00000100882 Gm6588 protein_coding Interval_63461 chr15 101221472 101222026 + 0 NA TTS (ENSMUSG00000097915.2) antisense-TTS (ENSMUSG00000097915.2) 502 ENSMUSG00000115944.1 ENSMUSG00000115944 ENSMUST00000229162 AU021063 lincRNA Interval_94208 chr2 85119700 85120269 + 0 NA Intergenic Intergenic -17408 ENSMUSG00000044338.9 ENSMUSG00000044338 ENSMUST00000184728 Aplnr protein_coding Interval_78946 chr18 22343287 22345368 + 0 NA promoter-TSS (ENSMUSG00000045215.17) protein_coding-promoter-TSS (ENSMUSG00000045215.17) 81 ENSMUSG00000045215.17 ENSMUSG00000045215 ENSMUST00000097655 Asxl3 protein_coding Interval_55403 chr14 86777192 86777382 + 0 NA intron (ENSMUSG00000022021.14, intron 25 of 26) protein_coding-intron (ENSMUSG00000022021.14, intron 25 of 27) -70102 ENSMUSG00000115306.1 ENSMUSG00000115306 ENSMUST00000226731 Gm49159 TEC Interval_154852 chr8 24386417 24386684 + 0 NA Intergenic Intergenic -25629 ENSMUSG00000109141.1 ENSMUSG00000109141 ENSMUST00000208709 Gm30692 lincRNA Interval_29826 chr11 87108544 87110077 + 0 NA promoter-TSS (ENSMUSG00000020492.11) protein_coding-promoter-TSS (ENSMUSG00000020492.11) 59 ENSMUSG00000020492.11 ENSMUSG00000020492 ENSMUST00000131202 Ska2 protein_coding Interval_99338 chr2 159412011 159412807 + 0 NA Intergenic Intergenic 44048 ENSMUSG00000083913.1 ENSMUSG00000083913 ENSMUST00000120414 Gm14219 processed_pseudogene Interval_20710 chr10 120417322 120418084 + 0 NA intron (ENSMUSG00000056758.14, intron 3 of 5) protein_coding-intron (ENSMUSG00000056758.14, intron 3 of 4) 28180 ENSMUSG00000090191.1 ENSMUSG00000090191 ENSMUST00000161291 9230105E05Rik antisense Interval_142956 chr6 147316301 147316536 + 0 NA Intergenic Intergenic 44581 ENSMUSG00000081023.1 ENSMUSG00000081023 ENSMUST00000118025 Gm15766 processed_pseudogene Interval_60538 chr15 74708878 74709798 + 0 NA exon (ENSMUSG00000046380.3, exon 1 of 2) protein_coding-exon (ENSMUSG00000046380.3, exon 1 of 2) 177 ENSMUSG00000044276.2 ENSMUSG00000044276 ENSMUST00000056711 4933427E11Rik antisense Interval_95332 chr2 106692886 106695385 + 0 NA intron (ENSMUSG00000016386.15, intron 1 of 6) protein_coding-intron (ENSMUSG00000016386.15, intron 1 of 6) -1085 ENSMUSG00000016386.15 ENSMUSG00000016386 ENSMUST00000133401 Mpped2 protein_coding Interval_6324 chr1 105891164 105891621 + 0 NA promoter-TSS (ENSMUSG00000102690.1) TEC-promoter-TSS (ENSMUSG00000102690.1) -380 ENSMUSG00000102690.1 ENSMUSG00000102690 ENSMUST00000194221 Gm37779 TEC Interval_56830 chr14 122321998 122322748 + 0 NA intron (ENSMUSG00000025545.10, intron 2 of 7) protein_coding-intron (ENSMUSG00000025545.10, intron 2 of 7) 64332 ENSMUSG00000025545.10 ENSMUSG00000025545 ENSMUST00000226136 Clybl protein_coding Interval_72636 chr17 31231530 31233252 + 0 NA exon (ENSMUSG00000042345.15, exon 9 of 12) protein_coding-exon (ENSMUSG00000042345.15, exon 9 of 12) -3092 ENSMUSG00000042345.15 ENSMUSG00000042345 ENSMUST00000237216 Ubash3a protein_coding Interval_123183 chr5 30455319 30456627 + 0 NA intron (ENSMUSG00000062372.13, intron 1 of 45) protein_coding-intron (ENSMUSG00000062372.13, intron 1 of 46) 5886 ENSMUSG00000062372.13 ENSMUSG00000062372 ENSMUST00000128177 Otof protein_coding Interval_118213 chr4 129563541 129564802 + 0 NA intron (ENSMUSG00000000409.14, intron 1 of 12) protein_coding-intron (ENSMUSG00000000409.14, intron 1 of 12) -5799 ENSMUSG00000000409.14 ENSMUSG00000000409 ENSMUST00000134336 Lck protein_coding Interval_153801 chr8 8720192 8720588 + 0 NA intron (ENSMUSG00000109190.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000109190.1, intron 1 of 2) 918 ENSMUSG00000109190.1 ENSMUSG00000109190 ENSMUST00000207643 Gm44621 lincRNA Interval_25200 chr11 45218823 45219312 + 0 NA Intergenic Intergenic -29195 ENSMUSG00000103248.1 ENSMUSG00000103248 ENSMUST00000193653 Gm38087 TEC Interval_71400 chr17 23546008 23547526 + 0 NA Intergenic Intergenic -4032 ENSMUSG00000117322.1 ENSMUSG00000117322 ENSMUST00000233076 6330415G19Rik antisense Interval_58051 chr15 27462895 27463104 + 0 NA exon (ENSMUSG00000115138.1, exon 1 of 5) lincRNA-exon (ENSMUSG00000115138.1, exon 1 of 5) 450 ENSMUSG00000115138.1 ENSMUSG00000115138 ENSMUST00000227384 Gm36899 lincRNA Interval_139621 chr6 103510524 103512899 + 0 NA intron (ENSMUSG00000030077.11, intron 1 of 4) protein_coding-intron (ENSMUSG00000030077.11, intron 1 of 26) -14541 ENSMUSG00000107804.1 ENSMUSG00000107804 ENSMUST00000203379 Gm44439 TEC Interval_54173 chr14 65968150 65969105 + 0 NA promoter-TSS (ENSMUSG00000022037.15) protein_coding-promoter-TSS (ENSMUSG00000022037.15) -1091 ENSMUSG00000022037.15 ENSMUSG00000022037 ENSMUST00000152903 Clu protein_coding Interval_134471 chr6 28979736 28982792 + 0 NA promoter-TSS (ENSMUSG00000092090.2) lincRNA-promoter-TSS (ENSMUSG00000092090.2) -370 ENSMUSG00000092090.2 ENSMUSG00000092090 ENSMUST00000164104 Gm3294 lincRNA Interval_93897 chr2 78309390 78310021 + 0 NA Intergenic Intergenic 8013 ENSMUSG00000054510.5 ENSMUSG00000054510 ENSMUST00000166653 Gm14461 lincRNA Interval_69271 chr16 91827631 91828087 + 0 NA TTS (ENSMUSG00000022957.20) protein_coding-TTS (ENSMUSG00000022957.20) -76204 ENSMUSG00000022957.20 ENSMUSG00000022957 ENSMUST00000137575 Itsn1 protein_coding Interval_170721 chr9 110333140 110334048 + 0 NA promoter-TSS (ENSMUSG00000032485.14) protein_coding-promoter-TSS (ENSMUSG00000032485.14) -3030 ENSMUSG00000106123.1 ENSMUSG00000106123 ENSMUST00000196065 Gm42638 TEC Interval_134371 chr6 27158338 27158741 + 0 NA Intergenic Intergenic 285414 ENSMUSG00000107377.1 ENSMUSG00000107377 ENSMUST00000202562 Gm42801 TEC Interval_159083 chr8 89987874 89988200 + 0 NA Intergenic Intergenic -320733 ENSMUSG00000088883.1 ENSMUSG00000088883 ENSMUST00000158258 Gm24212 snoRNA Interval_11548 chr1 182626200 182626692 + 0 NA intron (ENSMUSG00000038599.14, intron 16 of 20) protein_coding-intron (ENSMUSG00000038599.14, intron 16 of 20) -53493 ENSMUSG00000104376.1 ENSMUSG00000104376 ENSMUST00000192593 Gm37516 TEC Interval_95980 chr2 118912950 118913266 + 0 NA intron (ENSMUSG00000040007.8, intron 1 of 6) protein_coding-intron (ENSMUSG00000040007.8, intron 1 of 6) 12731 ENSMUSG00000040007.8 ENSMUSG00000040007 ENSMUST00000036578 Bahd1 protein_coding Interval_125869 chr5 75163868 75164069 + 0 NA TTS (ENSMUSG00000029231.15) protein_coding-TTS (ENSMUSG00000029231.15) 7135 ENSMUSG00000029231.15 ENSMUSG00000029231 ENSMUST00000200822 Pdgfra protein_coding Interval_74104 chr17 46584749 46585020 + 0 NA intron (ENSMUSG00000023972.10, intron 7 of 19) protein_coding-intron (ENSMUSG00000023972.10, intron 7 of 19) -11934 ENSMUSG00000023972.10 ENSMUSG00000023972 ENSMUST00000044442 Ptk7 protein_coding Interval_167159 chr9 65691968 65693201 + 0 NA exon (ENSMUSG00000040524.9, exon 10 of 10) protein_coding-exon (ENSMUSG00000040524.9, exon 10 of 10) 22872 ENSMUSG00000040652.16 ENSMUSG00000040652 ENSMUST00000128664 Oaz2 protein_coding Interval_15696 chr10 53641632 53641946 + 0 NA intron (ENSMUSG00000019856.14, intron 2 of 3) protein_coding-intron (ENSMUSG00000019856.14, intron 14 of 17) 5909 ENSMUSG00000019856.14 ENSMUSG00000019856 ENSMUST00000170839 Fam184a protein_coding Interval_52747 chr14 49311037 49311243 + 0 NA TTS (ENSMUSG00000021852.14) protein_coding-TTS (ENSMUSG00000021852.14) 11304 ENSMUSG00000115096.1 ENSMUSG00000115096 ENSMUST00000228016 Gm48940 antisense Interval_165003 chr9 43803127 43803942 + 0 NA exon (ENSMUSG00000032012.9, exon 6 of 6) protein_coding-exon (ENSMUSG00000032012.9, exon 6 of 6) 58890 ENSMUSG00000032012.9 ENSMUSG00000032012 ENSMUST00000180221 Nectin1 protein_coding Interval_50029 chr13 119835314 119836955 + 0 NA intron (ENSMUSG00000095514.2, intron 1 of 1) protein_coding-intron (ENSMUSG00000095514.2, intron 1 of 1) -5918 ENSMUSG00000094237.2 ENSMUSG00000094237 ENSMUST00000179455 AF067063 protein_coding Interval_6504 chr1 113227787 113228065 + 0 NA Intergenic Intergenic -61414 ENSMUSG00000101453.1 ENSMUSG00000101453 ENSMUST00000190085 Gm28189 lincRNA Interval_30109 chr11 89258185 89258608 + 0 NA Intergenic Intergenic 43936 ENSMUSG00000048616.4 ENSMUSG00000048616 ENSMUST00000061728 Nog protein_coding Interval_71694 chr17 25476130 25476358 + 0 NA intron (ENSMUSG00000024175.2, intron 5 of 5) protein_coding-intron (ENSMUSG00000024175.2, intron 5 of 5) 4647 ENSMUSG00000024175.2 ENSMUSG00000024175 ENSMUST00000234436 Tekt4 protein_coding Interval_60818 chr15 76940641 76941511 + 0 NA Intergenic Intergenic -6016 ENSMUSG00000115920.1 ENSMUSG00000115920 ENSMUST00000230695 Gm18283 processed_pseudogene Interval_93190 chr2 71026018 71027335 + 0 NA intron (ENSMUSG00000041975.17, intron 1 of 10) protein_coding-intron (ENSMUSG00000041975.17, intron 1 of 5) -29068 ENSMUSG00000041966.18 ENSMUSG00000041966 ENSMUST00000132619 Dcaf17 protein_coding Interval_103826 chr3 53454886 53456017 + 0 NA intron (ENSMUSG00000085174.1, intron 1 of 1) protein_coding-intron (ENSMUSG00000042997.13, intron 5 of 6) 2832 ENSMUSG00000085174.1 ENSMUSG00000085174 ENSMUST00000132485 Gm16206 antisense Interval_132955 chr5 148946756 148947605 + 0 NA intron (ENSMUSG00000085639.1, intron 2 of 2) antisense-intron (ENSMUSG00000085639.1, intron 2 of 2) 1686 ENSMUSG00000085639.1 ENSMUSG00000085639 ENSMUST00000127763 Gm15410 antisense Interval_42419 chr13 13411407 13411920 + 0 NA TTS (ENSMUSG00000113445.1) processed_pseudogene-TTS (ENSMUSG00000113445.1) 1131 ENSMUSG00000113445.1 ENSMUSG00000113445 ENSMUST00000221644 Gm48661 processed_pseudogene Interval_62765 chr15 96709149 96710338 + 0 NA Intergenic Intergenic 9570 ENSMUSG00000102385.1 ENSMUSG00000102385 ENSMUST00000192790 Gm38144 TEC Interval_174535 chrX 157378597 157379320 + 0 NA promoter-TSS (ENSMUSG00000082708.1) processed_pseudogene-promoter-TSS (ENSMUSG00000082708.1) 26 ENSMUSG00000082708.1 ENSMUSG00000082708 ENSMUST00000118945 Gm15172 processed_pseudogene Interval_123935 chr5 36737170 36738029 + 0 NA Intergenic Intergenic -11019 ENSMUSG00000107081.1 ENSMUSG00000107081 ENSMUST00000202047 Gm43701 antisense Interval_160703 chr8 111712344 111713233 + 0 NA intron (ENSMUSG00000031955.10, intron 5 of 6) protein_coding-intron (ENSMUSG00000031955.10, intron 5 of 6) 19348 ENSMUSG00000031955.10 ENSMUSG00000031955 ENSMUST00000212147 Bcar1 protein_coding Interval_73108 chr17 34872897 34873976 + 0 NA promoter-TSS (ENSMUSG00000092511.7) protein_coding-promoter-TSS (ENSMUSG00000092511.7) -6047 ENSMUSG00000049823.9 ENSMUSG00000049823 ENSMUST00000052778 Zbtb12 protein_coding Interval_116448 chr4 112367662 112368044 + 0 NA Intergenic Intergenic 66132 ENSMUSG00000049972.4 ENSMUSG00000049972 ENSMUST00000058605 Skint9 protein_coding Interval_146358 chr7 45500994 45502694 + 0 NA intron (ENSMUSG00000030824.17, intron 2 of 4) protein_coding-intron (ENSMUSG00000030824.17, intron 3 of 12) 8562 ENSMUSG00000030824.17 ENSMUSG00000030824 ENSMUST00000210208 Nucb1 protein_coding Interval_53691 chr14 60916094 60916439 + 0 NA Intergenic Intergenic 121625 ENSMUSG00000060548.13 ENSMUSG00000060548 ENSMUST00000225730 Tnfrsf19 protein_coding Interval_41217 chr12 111876758 111877058 + 0 NA intron (ENSMUSG00000021285.15, intron 1 of 3) protein_coding-intron (ENSMUSG00000021285.15, intron 1 of 16) -15772 ENSMUSG00000113357.1 ENSMUSG00000113357 ENSMUST00000222018 Gm19195 processed_pseudogene Interval_84193 chr19 8678177 8680523 + 0 NA exon (ENSMUSG00000032773.9, exon 2 of 2) protein_coding-exon (ENSMUSG00000032773.9, exon 2 of 2) 2813 ENSMUSG00000087830.1 ENSMUSG00000087830 ENSMUST00000157205 Gm22820 misc_RNA Interval_12370 chr1 192716787 192717005 + 0 NA intron (ENSMUSG00000037375.16, intron 7 of 11) protein_coding-intron (ENSMUSG00000037375.16, intron 7 of 11) -28675 ENSMUSG00000094131.1 ENSMUSG00000094131 ENSMUST00000082947 Gm22265 snRNA Interval_59514 chr15 54877836 54878262 + 0 NA intron (ENSMUSG00000022425.16, intron 11 of 25) protein_coding-intron (ENSMUSG00000022425.16, intron 11 of 24) -15363 ENSMUSG00000022425.16 ENSMUSG00000022425 ENSMUST00000226339 Enpp2 protein_coding Interval_141798 chr6 134594524 134595629 + 0 NA Intergenic Intergenic 12605 ENSMUSG00000107728.1 ENSMUSG00000107728 ENSMUST00000204630 Gm38910 lincRNA Interval_25988 chr11 53343279 53343778 + 0 NA Intergenic Intergenic 2149 ENSMUSG00000082263.1 ENSMUSG00000082263 ENSMUST00000122382 Gm11188 processed_pseudogene Interval_23182 chr11 20393197 20393710 + 0 NA Intergenic Intergenic -52959 ENSMUSG00000083878.3 ENSMUSG00000083878 ENSMUST00000119032 Gm12034 processed_pseudogene Interval_158456 chr8 83826088 83826776 + 0 NA Intergenic Intergenic 73514 ENSMUSG00000084682.1 ENSMUSG00000084682 ENSMUST00000122733 Gm22024 misc_RNA Interval_49590 chr13 113266506 113266889 + 0 NA Intergenic Intergenic -26462 ENSMUSG00000021763.17 ENSMUSG00000021763 ENSMUST00000135096 BC067074 protein_coding Interval_57865 chr15 23490073 23490441 + 0 NA exon (ENSMUSG00000115193.1, exon 1 of 1) processed_pseudogene-exon (ENSMUSG00000115193.1, exon 1 of 1) 366 ENSMUSG00000115193.1 ENSMUSG00000115193 ENSMUST00000227365 Gm6533 processed_pseudogene Interval_89900 chr2 26327714 26328026 + 0 NA TTS (ENSMUSG00000026930.15) protein_coding-TTS (ENSMUSG00000026930.15) 1836 ENSMUSG00000026930.15 ENSMUSG00000026930 ENSMUST00000142057 Gpsm1 protein_coding Interval_143400 chr7 6398259 6400052 + 0 NA intron (ENSMUSG00000089780.1, intron 1 of 1) protein_coding-intron (ENSMUSG00000093536.7, intron 1 of 2) 101 ENSMUSG00000089780.1 ENSMUSG00000089780 ENSMUST00000160568 Gm16306 sense_intronic Interval_59059 chr15 42676412 42677025 + 0 NA promoter-TSS (ENSMUSG00000022309.9) protein_coding-promoter-TSS (ENSMUSG00000022309.9) 31 ENSMUSG00000022309.9 ENSMUSG00000022309 ENSMUST00000227738 Angpt1 protein_coding Interval_34837 chr12 12405381 12405686 + 0 NA Intergenic Intergenic -12918 ENSMUSG00000114136.1 ENSMUSG00000114136 ENSMUST00000220545 4921511I17Rik antisense Interval_154083 chr8 12547434 12548812 + 0 NA Intergenic Intergenic -24906 ENSMUSG00000010435.7 ENSMUSG00000010435 ENSMUST00000209428 Spaca7 protein_coding Interval_7820 chr1 133899040 133899476 + 0 NA intron (ENSMUSG00000010311.15, intron 5 of 6) protein_coding-intron (ENSMUSG00000010311.15, intron 5 of 6) -7273 ENSMUSG00000090208.1 ENSMUSG00000090208 ENSMUST00000160564 Gm15851 antisense Interval_138185 chr6 86016611 86017598 + 0 NA promoter-TSS (ENSMUSG00000030001.4) protein_coding-promoter-TSS (ENSMUSG00000030001.4) 933 ENSMUSG00000030001.4 ENSMUSG00000030001 ENSMUST00000032070 Figla protein_coding Interval_34809 chr12 11455676 11456496 + 0 NA promoter-TSS (ENSMUSG00000086022.1) protein_coding-promoter-TSS (ENSMUSG00000086022.1) 7 ENSMUSG00000086022.1 ENSMUSG00000086022 ENSMUST00000124065 Rad51ap2 protein_coding Interval_126405 chr5 88129172 88129524 + 0 NA Intergenic Intergenic -15356 ENSMUSG00000105807.1 ENSMUSG00000105807 ENSMUST00000197229 Gm42622 processed_pseudogene Interval_63842 chr16 3940220 3940438 + 0 NA intron (ENSMUSG00000014232.14, intron 11 of 11) protein_coding-intron (ENSMUSG00000014232.14, intron 11 of 11) -10972 ENSMUSG00000085048.1 ENSMUSG00000085048 ENSMUST00000126677 Gm15537 antisense Interval_49188 chr13 109268187 109268438 + 0 NA intron (ENSMUSG00000021699.17, intron 1 of 14) protein_coding-intron (ENSMUSG00000021699.17, intron 1 of 14) -56432 ENSMUSG00000076946.2 ENSMUSG00000076946 ENSMUST00000103758 Mir582 miRNA Interval_138278 chr6 86822242 86823282 + 0 NA Intergenic Intergenic 26678 ENSMUSG00000100164.1 ENSMUSG00000100164 ENSMUST00000185414 2610306M01Rik bidirectional_promoter_lncRNA Interval_125010 chr5 63827135 63827604 + 0 NA intron (ENSMUSG00000060512.7, intron 1 of 4) protein_coding-intron (ENSMUSG00000060512.7, intron 1 of 3) 26907 ENSMUSG00000090061.9 ENSMUSG00000090061 ENSMUST00000162757 Nwd2 protein_coding Interval_108112 chr3 121569233 121570290 + 0 NA Intergenic Intergenic 38132 ENSMUSG00000097124.2 ENSMUSG00000097124 ENSMUST00000180804 A530020G20Rik antisense Interval_69912 chr17 3144552 3144847 + 0 NA intron (ENSMUSG00000046201.9, intron 2 of 4) protein_coding-intron (ENSMUSG00000046201.9, intron 1 of 19) -14187 ENSMUSG00000116941.1 ENSMUSG00000116941 ENSMUST00000232579 Gm46578 processed_pseudogene Interval_7469 chr1 131635919 131636359 + 0 NA Intergenic Intergenic -3170 ENSMUSG00000095841.2 ENSMUSG00000095841 ENSMUST00000179174 Gm8532 processed_pseudogene Interval_101216 chr2 179546310 179546604 + 0 NA intron (ENSMUSG00000000305.12, intron 2 of 2) protein_coding-intron (ENSMUSG00000000305.12, intron 2 of 15) 67110 ENSMUSG00000083410.1 ENSMUSG00000083410 ENSMUST00000120800 Gm14300 processed_pseudogene Interval_30890 chr11 97082710 97083020 + 0 NA Intergenic Intergenic -14068 ENSMUSG00000084068.1 ENSMUSG00000084068 ENSMUST00000119956 Gm11573 processed_pseudogene Interval_57403 chr15 10605590 10605837 + 0 NA intron (ENSMUSG00000115667.1, intron 2 of 2) protein_coding-intron (ENSMUSG00000022246.14, intron 4 of 17) 5376 ENSMUSG00000115667.1 ENSMUSG00000115667 ENSMUST00000228059 Gm10389 antisense Interval_63263 chr15 100002761 100003074 + 0 NA promoter-TSS (ENSMUSG00000023025.16) protein_coding-promoter-TSS (ENSMUSG00000023025.16) -29630 ENSMUSG00000100084.2 ENSMUSG00000100084 ENSMUST00000188271 2310068J16Rik antisense Interval_130714 chr5 129953089 129953438 + 0 NA intron (ENSMUSG00000066735.8, intron 1 of 1) protein_coding-intron (ENSMUSG00000066735.8, intron 1 of 2) 7683 ENSMUSG00000107118.1 ENSMUSG00000107118 ENSMUST00000201618 Gm42986 TEC Interval_41465 chr12 114574443 114574708 + 0 NA Intergenic Intergenic 9427 ENSMUSG00000094694.6 ENSMUSG00000094694 ENSMUST00000103498 Ighv1-9 IG_V_gene Interval_85263 chr19 24223286 24225909 + 0 NA intron (ENSMUSG00000024812.11, intron 1 of 23) protein_coding-intron (ENSMUSG00000024812.11, intron 1 of 22) 53574 ENSMUSG00000059363.10 ENSMUSG00000059363 ENSMUST00000132688 Fxn protein_coding Interval_38962 chr12 84147786 84148630 + 0 NA TTS (ENSMUSG00000042507.15) protein_coding-TTS (ENSMUSG00000042507.15) 281 ENSMUSG00000054383.2 ENSMUSG00000054383 ENSMUST00000061425 Pnma1 protein_coding Interval_19104 chr10 94571723 94572608 + 0 NA intron (ENSMUSG00000086269.2, intron 2 of 2) protein_coding-intron (ENSMUSG00000020023.18, intron 1 of 3) 14034 ENSMUSG00000098544.1 ENSMUSG00000098544 ENSMUST00000184071 Mir7211 miRNA Interval_157829 chr8 74673800 74674153 + 0 NA intron (ENSMUSG00000079011.9, intron 5 of 9) lincRNA-intron (ENSMUSG00000079011.9, intron 5 of 9) 159961 ENSMUSG00000079011.9 ENSMUSG00000079011 ENSMUST00000137218 Gm11033 lincRNA Interval_67864 chr16 58371245 58371838 + 0 NA Intergenic Intergenic 36735 ENSMUSG00000086827.1 ENSMUSG00000086827 ENSMUST00000133622 4930461C15Rik lincRNA Interval_91711 chr2 48563945 48564371 + 0 NA Intergenic Intergenic -106913 ENSMUSG00000086353.1 ENSMUSG00000086353 ENSMUST00000127672 Gm13481 lincRNA Interval_95011 chr2 103011189 103011437 + 0 NA Intergenic Intergenic 62022 ENSMUSG00000010914.10 ENSMUSG00000010914 ENSMUST00000111183 Pdhx protein_coding Interval_13688 chr10 21054183 21057037 + 0 NA intron (ENSMUSG00000019986.17, intron 4 of 5) protein_coding-intron (ENSMUSG00000019986.17, intron 20 of 23) -6711 ENSMUSG00000111227.1 ENSMUSG00000111227 ENSMUST00000214691 Gm20149 antisense Interval_61260 chr15 80303854 80304141 + 0 NA intron (ENSMUSG00000022416.15, intron 2 of 36) protein_coding-intron (ENSMUSG00000022416.15, intron 2 of 36) -39751 ENSMUSG00000051518.8 ENSMUSG00000051518 ENSMUST00000229962 Rps19bp1 protein_coding Interval_16556 chr10 63605734 63606386 + 0 NA intron (ENSMUSG00000060843.11, intron 5 of 17) protein_coding-intron (ENSMUSG00000060843.11, intron 4 of 16) -184271 ENSMUSG00000048185.5 ENSMUSG00000048185 ENSMUST00000054760 Gm7075 protein_coding Interval_151680 chr7 125985591 125985963 + 0 NA intron (ENSMUSG00000046182.8, intron 2 of 6) protein_coding-intron (ENSMUSG00000046182.8, intron 2 of 6) 78670 ENSMUSG00000108376.1 ENSMUSG00000108376 ENSMUST00000206586 Gm44874 TEC Interval_12659 chr10 4188047 4189274 + 0 NA Intergenic Intergenic 18773 ENSMUSG00000089473.1 ENSMUSG00000089473 ENSMUST00000158848 Gm25369 snoRNA Interval_103361 chr3 40441101 40442512 + 0 NA Intergenic Intergenic 67968 ENSMUSG00000037884.6 ENSMUSG00000037884 ENSMUST00000202778 1700017G19Rik lincRNA Interval_70219 chr17 6776674 6777855 + 0 NA intron (ENSMUSG00000052397.8, intron 1 of 12) protein_coding-intron (ENSMUSG00000052397.8, intron 1 of 12) -13529 ENSMUSG00000116893.1 ENSMUSG00000116893 ENSMUST00000231691 Gm49717 processed_pseudogene Interval_19254 chr10 95817625 95818222 + 0 NA promoter-TSS (ENSMUSG00000112771.1) lincRNA-promoter-TSS (ENSMUSG00000112771.1) -28 ENSMUSG00000112771.1 ENSMUSG00000112771 ENSMUST00000218099 Gm47718 lincRNA Interval_38787 chr12 82346394 82346727 + 0 NA intron (ENSMUSG00000042700.16, intron 3 of 21) protein_coding-intron (ENSMUSG00000042700.16, intron 2 of 20) 149977 ENSMUSG00000094374.2 ENSMUSG00000094374 ENSMUST00000179295 Gm5435 processed_pseudogene Interval_50856 chr14 20234118 20235005 + 0 NA Intergenic Intergenic 19059 ENSMUSG00000114439.1 ENSMUSG00000114439 ENSMUST00000223732 Gm48395 lincRNA Interval_136000 chr6 49355271 49355652 + 0 NA Intergenic Intergenic -32018 ENSMUSG00000047115.15 ENSMUSG00000047115 ENSMUST00000203182 Fam221a protein_coding Interval_30188 chr11 90355314 90356456 + 0 NA intron (ENSMUSG00000003949.16, intron 1 of 1) protein_coding-intron (ENSMUSG00000003949.16, intron 2 of 3) 32088 ENSMUSG00000003949.16 ENSMUSG00000003949 ENSMUST00000145786 Hlf protein_coding Interval_55448 chr14 87426033 87427275 + 0 NA intron (ENSMUSG00000022019.16, intron 1 of 11) protein_coding-intron (ENSMUSG00000022019.16, intron 1 of 13) -1696 ENSMUSG00000115564.1 ENSMUSG00000115564 ENSMUST00000226140 Gm49199 TEC Interval_110507 chr4 3368003 3368790 + 0 NA Intergenic Intergenic -18450 ENSMUSG00000083489.1 ENSMUSG00000083489 ENSMUST00000118568 Gm11784 unprocessed_pseudogene Interval_73997 chr17 45931156 45931794 + 0 NA Intergenic Intergenic -30384 ENSMUSG00000117040.1 ENSMUSG00000117040 ENSMUST00000233512 Gm49805 lincRNA Interval_112990 chr4 46649438 46650961 + 0 NA promoter-TSS (ENSMUSG00000039813.14) protein_coding-promoter-TSS (ENSMUSG00000039813.14) 10 ENSMUSG00000039813.14 ENSMUSG00000039813 ENSMUST00000107750 Tbc1d2 protein_coding Interval_160336 chr8 108534997 108536220 + 0 NA TTS (ENSMUSG00000109868.1) lincRNA-TTS (ENSMUSG00000109868.1) 1613 ENSMUSG00000109868.1 ENSMUSG00000109868 ENSMUST00000211262 Gm39244 lincRNA Interval_76809 chr17 84218725 84219451 + 0 NA intron (ENSMUSG00000024251.10, intron 11 of 12) protein_coding-intron (ENSMUSG00000024251.10, intron 36 of 37) -31141 ENSMUSG00000045817.8 ENSMUSG00000045817 ENSMUST00000060366 Zfp36l2 protein_coding Interval_173133 chrX 73191690 73192089 + 0 NA promoter-TSS (ENSMUSG00000073125.10) protein_coding-promoter-TSS (ENSMUSG00000073125.10) -322 ENSMUSG00000073125.10 ENSMUSG00000073125 ENSMUST00000101486 Xlr3b protein_coding Interval_26695 chr11 59778251 59779146 + 0 NA exon (ENSMUSG00000005417.17, exon 23 of 23) protein_coding-exon (ENSMUSG00000005417.17, exon 23 of 23) 1623 ENSMUSG00000086536.1 ENSMUSG00000086536 ENSMUST00000123949 Gm12264 antisense Interval_22127 chr11 6503069 6503291 + 0 NA Intergenic Intergenic 17778 ENSMUSG00000020437.12 ENSMUSG00000020437 ENSMUST00000134489 Myo1g protein_coding Interval_103465 chr3 41820064 41820707 + 0 NA Intergenic Intergenic 47204 ENSMUSG00000103952.1 ENSMUSG00000103952 ENSMUST00000192254 Gm37268 TEC Interval_165561 chr9 49502853 49503402 + 0 NA exon (ENSMUSG00000039542.16, exon 18 of 18) protein_coding-exon (ENSMUSG00000039542.16, exon 18 of 18) -15161 ENSMUSG00000079564.3 ENSMUSG00000079564 ENSMUST00000215070 Gm11149 antisense Interval_45488 chr13 55418005 55418527 + 0 NA exon (ENSMUSG00000021492.15, exon 14 of 14) protein_coding-exon (ENSMUSG00000021492.15, exon 14 of 14) -3034 ENSMUSG00000044444.6 ENSMUSG00000044444 ENSMUST00000054146 Pfn3 protein_coding Interval_111806 chr4 30490050 30490267 + 0 NA intron (ENSMUSG00000087180.1, intron 3 of 3) lincRNA-intron (ENSMUSG00000087180.1, intron 3 of 3) 58046 ENSMUSG00000087180.1 ENSMUSG00000087180 ENSMUST00000152306 Gm11924 lincRNA Interval_35497 chr12 23099432 23099729 + 0 NA Intergenic Intergenic -6187 ENSMUSG00000113751.1 ENSMUSG00000113751 ENSMUST00000223096 Gm9293 unprocessed_pseudogene Interval_107458 chr3 107850396 107851531 + 0 NA Intergenic Intergenic -17424 ENSMUSG00000106426.1 ENSMUSG00000106426 ENSMUST00000198171 Gm36211 lincRNA Interval_91478 chr2 39161301 39162487 + 0 NA promoter-TSS (ENSMUSG00000082315.2) transcribed_processed_pseudogene-promoter-TSS (ENSMUSG00000082315.2) 341 ENSMUSG00000082315.2 ENSMUSG00000082315 ENSMUST00000121253 Gm16523 transcribed_processed_pseudogene Interval_85441 chr19 26371350 26371748 + 0 NA Intergenic Intergenic -62842 ENSMUSG00000118005.1 ENSMUSG00000118005 ENSMUST00000236317 Gm50377 lincRNA Interval_137231 chr6 70523674 70525097 + 0 NA Intergenic Intergenic 6135 ENSMUSG00000094117.1 ENSMUSG00000094117 ENSMUST00000103396 Igkv3-12 IG_V_gene Interval_135577 chr6 40697408 40697748 + 0 NA intron (ENSMUSG00000068587.10, intron 42 of 92) protein_coding-intron (ENSMUSG00000068587.10, intron 31 of 47) 54599 ENSMUSG00000068587.10 ENSMUSG00000068587 ENSMUST00000202311 Mgam protein_coding Interval_14274 chr10 30241313 30241531 + 0 NA Intergenic Intergenic -40930 ENSMUSG00000075266.5 ENSMUSG00000075266 ENSMUST00000099985 Cenpw protein_coding Interval_22164 chr11 6732585 6732776 + 0 NA Intergenic Intergenic -12643 ENSMUSG00000086808.1 ENSMUSG00000086808 ENSMUST00000139769 Gm11981 processed_transcript Interval_51628 chr14 30899757 30900540 + 0 NA intron (ENSMUSG00000021922.17, intron 1 of 3) protein_coding-intron (ENSMUSG00000021922.17, intron 19 of 21) 987 ENSMUSG00000021922.17 ENSMUSG00000021922 ENSMUST00000227899 Itih4 protein_coding Interval_154060 chr8 12402751 12402954 + 0 NA intron (ENSMUSG00000047935.17, intron 1 of 6) sense_overlapping-intron (ENSMUSG00000047935.17, intron 1 of 8) 6449 ENSMUSG00000092656.1 ENSMUSG00000092656 ENSMUST00000174915 Gm25239 miRNA Interval_49405 chr13 111762067 111762238 + 0 NA intron (ENSMUSG00000021754.17, intron 9 of 19) protein_coding-intron (ENSMUSG00000021754.17, intron 9 of 19) -10779 ENSMUSG00000021754.17 ENSMUSG00000021754 ENSMUST00000145055 Map3k1 protein_coding Interval_13308 chr10 14459339 14460596 + 0 NA intron (ENSMUSG00000039116.7, intron 4 of 23) protein_coding-intron (ENSMUSG00000039116.7, intron 4 of 24) -63111 ENSMUSG00000071532.6 ENSMUSG00000071532 ENSMUST00000096020 Gm10335 processed_pseudogene Interval_97667 chr2 142533727 142533948 + 0 NA Intergenic Intergenic -36671 ENSMUSG00000081125.3 ENSMUSG00000081125 ENSMUST00000122220 Rpl26-ps5 processed_pseudogene Interval_118378 chr4 130981376 130982083 + 0 NA exon (ENSMUSG00000085804.1, exon 2 of 4) lincRNA-exon (ENSMUSG00000085804.1, exon 2 of 4) 6939 ENSMUSG00000085804.1 ENSMUSG00000085804 ENSMUST00000143967 Gm12973 lincRNA Interval_66044 chr16 31179472 31181071 + 0 NA intron (ENSMUSG00000049076.12, intron 1 of 23) protein_coding-intron (ENSMUSG00000049076.12, intron 1 of 21) 22401 ENSMUSG00000116943.1 ENSMUSG00000116943 ENSMUST00000231868 Gm18237 processed_pseudogene Interval_81137 chr18 54815794 54816220 + 0 NA intron (ENSMUSG00000118120.1, intron 2 of 5) lincRNA-intron (ENSMUSG00000118120.1, intron 2 of 5) 7782 ENSMUSG00000118120.1 ENSMUSG00000118120 ENSMUST00000236611 Gm33732 lincRNA Interval_72258 chr17 28846390 28847568 + 0 NA Intergenic Intergenic -11539 ENSMUSG00000043286.12 ENSMUSG00000043286 ENSMUST00000114737 Pnpla1 protein_coding Interval_22118 chr11 6451447 6451861 + 0 NA Intergenic Intergenic -1497 ENSMUSG00000083693.1 ENSMUSG00000083693 ENSMUST00000117715 Gm11971 processed_pseudogene Interval_144649 chr7 27330608 27331572 + 0 NA intron (ENSMUSG00000040488.18, intron 4 of 32) protein_coding-intron (ENSMUSG00000040488.18, intron 4 of 32) 2558 ENSMUSG00000040488.18 ENSMUSG00000040488 ENSMUST00000206413 Ltbp4 protein_coding Interval_5302 chr1 87360864 87361152 + 0 NA intron (ENSMUSG00000048000.15, intron 1 of 26) protein_coding-intron (ENSMUSG00000048000.15, intron 3 of 28) -19447 ENSMUSG00000095281.1 ENSMUSG00000095281 ENSMUST00000178461 Gm22549 snRNA Interval_95984 chr2 118939995 118940223 + 0 NA Intergenic Intergenic 13595 ENSMUSG00000074916.5 ENSMUSG00000074916 ENSMUST00000110837 Chst14 protein_coding Interval_86968 chr19 45254195 45255200 + 0 NA Intergenic Intergenic -18885 ENSMUSG00000025216.9 ENSMUSG00000025216 ENSMUST00000099401 Lbx1 protein_coding Interval_88066 chr19 58762141 58763359 + 0 NA intron (ENSMUSG00000025091.4, intron 4 of 11) protein_coding-intron (ENSMUSG00000025091.4, intron 4 of 11) 3031 ENSMUSG00000025091.4 ENSMUSG00000025091 ENSMUST00000026081 Pnliprp2 protein_coding Interval_119973 chr4 141180103 141180301 + 0 NA intron (ENSMUSG00000028920.9, intron 3 of 9) protein_coding-intron (ENSMUSG00000028920.9, intron 3 of 9) 32280 ENSMUSG00000028920.9 ENSMUSG00000028920 ENSMUST00000146768 Fbxo42 protein_coding Interval_95159 chr2 104436532 104437413 + 0 NA intron (ENSMUSG00000027177.14, intron 3 of 6) protein_coding-intron (ENSMUSG00000027177.14, intron 8 of 15) 2280 ENSMUSG00000027177.14 ENSMUSG00000027177 ENSMUST00000132622 Hipk3 protein_coding Interval_111553 chr4 22907285 22907856 + 0 NA Intergenic Intergenic 30865 ENSMUSG00000028244.6 ENSMUSG00000028244 ENSMUST00000123729 1700025O08Rik lincRNA Interval_160965 chr8 116486357 116486842 + 0 NA Intergenic Intergenic -2587 ENSMUSG00000110700.1 ENSMUSG00000110700 ENSMUST00000212720 Gm5357 processed_pseudogene Interval_103922 chr3 55003817 55004290 + 0 NA Intergenic Intergenic 50984 ENSMUSG00000027793.6 ENSMUSG00000027793 ENSMUST00000199352 Ccna1 protein_coding Interval_169469 chr9 97815811 97817186 + 0 NA intron (ENSMUSG00000032452.12, intron 1 of 16) protein_coding-intron (ENSMUSG00000032452.12, intron 1 of 17) 113657 ENSMUSG00000104462.1 ENSMUSG00000104462 ENSMUST00000191863 Gm37661 TEC Interval_119328 chr4 136893914 136894358 + 0 NA Intergenic Intergenic -1260 ENSMUSG00000036896.5 ENSMUSG00000036896 ENSMUST00000153104 C1qc protein_coding Interval_99978 chr2 166211176 166211768 + 0 NA Intergenic Intergenic -2845 ENSMUSG00000085046.1 ENSMUSG00000085046 ENSMUST00000129407 Gm11467 lincRNA Interval_77585 chr17 92465723 92466006 + 0 NA Intergenic Intergenic 62646 ENSMUSG00000098122.1 ENSMUSG00000098122 ENSMUST00000182438 Gm27039 processed_pseudogene Interval_58790 chr15 38077462 38079283 + 0 NA promoter-TSS (ENSMUSG00000037487.7) protein_coding-promoter-TSS (ENSMUSG00000037487.7) -730 ENSMUSG00000115771.1 ENSMUSG00000115771 ENSMUST00000228698 Gm49312 bidirectional_promoter_lncRNA Interval_136660 chr6 57287508 57287748 + 0 NA Intergenic Intergenic 9600 ENSMUSG00000093520.2 ENSMUSG00000093520 ENSMUST00000177047 Vmn1r-ps9 unprocessed_pseudogene Interval_132175 chr5 143112289 143113442 + 0 NA intron (ENSMUSG00000045078.12, intron 1 of 16) protein_coding-intron (ENSMUSG00000045078.12, intron 1 of 16) 115 ENSMUSG00000045078.12 ENSMUSG00000045078 ENSMUST00000200002 Rnf216 protein_coding Interval_36186 chr12 38293212 38293426 + 0 NA intron (ENSMUSG00000036095.11, intron 19 of 22) protein_coding-intron (ENSMUSG00000036095.11, intron 19 of 24) 75911 ENSMUSG00000113248.1 ENSMUSG00000113248 ENSMUST00000222381 Gm18338 processed_pseudogene Interval_79746 chr18 34859857 34861773 + 0 NA promoter-TSS (ENSMUSG00000038418.7) protein_coding-promoter-TSS (ENSMUSG00000038418.7) -392 ENSMUSG00000038418.7 ENSMUSG00000038418 ENSMUST00000165033 Egr1 protein_coding Interval_166894 chr9 63754802 63755426 + 0 NA intron (ENSMUSG00000032402.12, intron 1 of 8) protein_coding-intron (ENSMUSG00000032402.12, intron 1 of 8) -43145 ENSMUSG00000032402.12 ENSMUSG00000032402 ENSMUST00000137065 Smad3 protein_coding Interval_92576 chr2 60823266 60823479 + 0 NA intron (ENSMUSG00000026970.16, intron 2 of 14) protein_coding-intron (ENSMUSG00000026970.16, intron 2 of 13) 58066 ENSMUSG00000026970.16 ENSMUSG00000026970 ENSMUST00000128866 Rbms1 protein_coding Interval_65524 chr16 23080121 23080482 + 0 NA TTS (ENSMUSG00000022875.18) protein_coding-TTS (ENSMUSG00000022875.18) -12642 ENSMUSG00000116625.1 ENSMUSG00000116625 ENSMUST00000231398 Gm8134 processed_pseudogene Interval_165694 chr9 51031939 51032608 + 0 NA Intergenic Intergenic -23273 ENSMUSG00000037112.16 ENSMUSG00000037112 ENSMUST00000176327 Sik2 protein_coding Interval_77156 chr17 86945741 86946283 + 0 NA intron (ENSMUSG00000053375.8, intron 1 of 3) protein_coding-intron (ENSMUSG00000053375.8, intron 1 of 1) 1885 ENSMUSG00000053375.8 ENSMUSG00000053375 ENSMUST00000235110 Atp6v1e2 protein_coding Interval_102613 chr3 28405372 28405737 + 0 NA intron (ENSMUSG00000027692.16, intron 2 of 30) protein_coding-intron (ENSMUSG00000027692.16, intron 2 of 30) -14389 ENSMUSG00000092990.1 ENSMUSG00000092990 ENSMUST00000175249 Mir466q miRNA Interval_115191 chr4 94060523 94060998 + 0 NA promoter-TSS (ENSMUSG00000081685.1) processed_pseudogene-promoter-TSS (ENSMUSG00000081685.1) -613 ENSMUSG00000081685.1 ENSMUSG00000081685 ENSMUST00000118977 Gm12647 processed_pseudogene Interval_93516 chr2 73730120 73730327 + 0 NA intron (ENSMUSG00000056486.18, intron 1 of 9) protein_coding-intron (ENSMUSG00000056486.18, intron 1 of 12) 71953 ENSMUSG00000085838.1 ENSMUSG00000085838 ENSMUST00000123613 Chn1os1 antisense Interval_135468 chr6 39469040 39470492 + 0 NA intron (ENSMUSG00000038456.9, intron 6 of 10) protein_coding-intron (ENSMUSG00000038456.9, intron 14 of 18) 16690 ENSMUSG00000038456.9 ENSMUSG00000038456 ENSMUST00000154149 Dennd2a protein_coding Interval_20916 chr10 121984147 121984874 + 0 NA intron (ENSMUSG00000020121.15, intron 1 of 3) protein_coding-intron (ENSMUSG00000020121.15, intron 1 of 21) 62805 ENSMUSG00000020121.15 ENSMUSG00000020121 ENSMUST00000162710 Srgap1 protein_coding Interval_123119 chr5 29807494 29807925 + 0 NA exon (ENSMUSG00000105999.1, exon 1 of 1) processed_pseudogene-exon (ENSMUSG00000105999.1, exon 1 of 1) 449 ENSMUSG00000105999.1 ENSMUSG00000105999 ENSMUST00000197485 Gm2213 processed_pseudogene Interval_50103 chr14 8001019 8001610 + 0 NA Intergenic Intergenic -1605 ENSMUSG00000025277.14 ENSMUSG00000025277 ENSMUST00000026313 Abhd6 protein_coding Interval_152370 chr7 132484608 132485825 + 0 NA TTS (ENSMUSG00000108858.1) processed_pseudogene-TTS (ENSMUSG00000108858.1) 1558 ENSMUSG00000108858.1 ENSMUSG00000108858 ENSMUST00000209135 Gm4587 processed_pseudogene Interval_112419 chr4 41149827 41151596 + 0 NA intron (ENSMUSG00000036241.3, intron 1 of 4) protein_coding-intron (ENSMUSG00000036241.3, intron 1 of 4) -17867 ENSMUSG00000081437.1 ENSMUSG00000081437 ENSMUST00000120536 Gm12402 processed_pseudogene Interval_134252 chr6 23776864 23777989 + 0 NA intron (ENSMUSG00000017978.18, intron 2 of 29) protein_coding-intron (ENSMUSG00000017978.18, intron 1 of 29) 61711 ENSMUSG00000017978.18 ENSMUSG00000017978 ENSMUST00000115355 Cadps2 protein_coding Interval_76503 chr17 80620763 80621566 + 0 NA intron (ENSMUSG00000024242.15, intron 1 of 18) protein_coding-intron (ENSMUSG00000024242.15, intron 16 of 33) 3822 ENSMUSG00000024242.15 ENSMUSG00000024242 ENSMUST00000234486 Map4k3 protein_coding Interval_84778 chr19 16584955 16585902 + 0 NA intron (ENSMUSG00000024697.4, intron 2 of 6) protein_coding-intron (ENSMUSG00000024697.4, intron 2 of 6) -12960 ENSMUSG00000118023.1 ENSMUSG00000118023 ENSMUST00000237942 Gm50363 processed_pseudogene Interval_87282 chr19 47372204 47372456 + 0 NA intron (ENSMUSG00000053617.12, intron 3 of 4) protein_coding-intron (ENSMUSG00000053617.12, intron 4 of 14) 38029 ENSMUSG00000053617.12 ENSMUSG00000053617 ENSMUST00000237828 Sh3pxd2a protein_coding Interval_44954 chr13 50829822 50830393 + 0 NA Intergenic Intergenic 30049 ENSMUSG00000113509.1 ENSMUSG00000113509 ENSMUST00000223072 Gm19009 processed_pseudogene Interval_131725 chr5 139515977 139517497 + 0 NA Intergenic Intergenic -7012 ENSMUSG00000106056.1 ENSMUSG00000106056 ENSMUST00000198000 4930500L23Rik lincRNA Interval_55311 chr14 82290448 82291331 + 0 NA Intergenic Intergenic 93640 ENSMUSG00000089266.1 ENSMUSG00000089266 ENSMUST00000158641 Gm22891 snRNA Interval_154528 chr8 18954005 18954666 + 0 NA Intergenic Intergenic -3419 ENSMUSG00000039814.15 ENSMUSG00000039814 ENSMUST00000143913 Xkr5 protein_coding Interval_76869 chr17 84635429 84635610 + 0 NA intron (ENSMUSG00000024253.9, intron 4 of 12) protein_coding-intron (ENSMUSG00000024253.9, intron 4 of 12) -9124 ENSMUSG00000117647.1 ENSMUSG00000117647 ENSMUST00000234641 Gm49969 antisense Interval_152960 chr7 140069615 140071034 + 0 NA exon (ENSMUSG00000025468.15, exon 5 of 5) protein_coding-exon (ENSMUSG00000025468.15, exon 5 of 5) 12188 ENSMUSG00000025468.15 ENSMUSG00000025468 ENSMUST00000211681 Caly protein_coding Interval_156788 chr8 59781097 59781867 + 0 NA Intergenic Intergenic -44167 ENSMUSG00000110406.1 ENSMUSG00000110406 ENSMUST00000209438 4930470O06Rik lincRNA Interval_101031 chr2 174344885 174346205 + 0 NA TTS (ENSMUSG00000027523.20) protein_coding-TTS (ENSMUSG00000027523.20) 1167 ENSMUSG00000090625.1 ENSMUSG00000090625 ENSMUST00000168292 Gm20721 protein_coding Interval_15055 chr10 42253641 42255032 + 0 NA intron (ENSMUSG00000048756.11, intron 2 of 2) protein_coding-intron (ENSMUSG00000048756.11, intron 2 of 3) 4030 ENSMUSG00000048756.11 ENSMUSG00000048756 ENSMUST00000105501 Foxo3 protein_coding Interval_45710 chr13 57189419 57189927 + 0 NA Intergenic Intergenic -50174 ENSMUSG00000114363.1 ENSMUSG00000114363 ENSMUST00000225562 Gm48174 processed_pseudogene Interval_129969 chr5 123371951 123372233 + 0 NA exon (ENSMUSG00000029438.9, exon 6 of 6) protein_coding-exon (ENSMUSG00000029438.9, exon 6 of 6) 5093 ENSMUSG00000104830.1 ENSMUSG00000104830 ENSMUST00000200118 5830487J09Rik processed_transcript Interval_169264 chr9 95958582 95959270 + 0 NA intron (ENSMUSG00000032410.13, intron 1 of 2) protein_coding-intron (ENSMUSG00000032410.13, intron 1 of 41) 4064 ENSMUSG00000032410.13 ENSMUSG00000032410 ENSMUST00000187359 Xrn1 protein_coding Interval_53954 chr14 63758336 63758605 + 0 NA intron (ENSMUSG00000035067.9, intron 1 of 2) protein_coding-intron (ENSMUSG00000035067.9, intron 1 of 2) 31281 ENSMUSG00000076049.4 ENSMUSG00000076049 ENSMUST00000102094 Mir598 miRNA Interval_120147 chr4 143026979 143027970 + 0 NA intron (ENSMUSG00000110067.2, intron 1 of 1) protein_coding-intron (ENSMUSG00000110067.2, intron 1 of 2) 46292 ENSMUSG00000110067.2 ENSMUSG00000110067 ENSMUST00000238915 6330411D24Rik protein_coding Interval_58779 chr15 38026941 38027988 + 0 NA intron (ENSMUSG00000037487.7, intron 13 of 58) protein_coding-intron (ENSMUSG00000037487.7, intron 13 of 58) -30821 ENSMUSG00000065852.1 ENSMUSG00000065852 ENSMUST00000083918 Gm22353 snoRNA Interval_155242 chr8 28593441 28593887 + 0 NA exon (ENSMUSG00000097776.1, exon 1 of 2) lincRNA-exon (ENSMUSG00000097776.1, exon 1 of 2) 132 ENSMUSG00000097776.1 ENSMUSG00000097776 ENSMUST00000181267 Gm26795 lincRNA Interval_65058 chr16 18750972 18751446 + 0 NA Intergenic Intergenic -25638 ENSMUSG00000041378.2 ENSMUSG00000041378 ENSMUST00000043577 Cldn5 protein_coding Interval_45124 chr13 52535670 52535921 + 0 NA Intergenic Intergenic -4516 ENSMUSG00000047842.7 ENSMUSG00000047842 ENSMUST00000057442 Diras2 protein_coding Interval_129637 chr5 121464687 121464935 + 0 NA exon (ENSMUSG00000029452.18, exon 3 of 10) protein_coding-exon (ENSMUSG00000029452.18, exon 3 of 10) 7577 ENSMUSG00000082760.2 ENSMUSG00000082760 ENSMUST00000122095 Gm15546 processed_pseudogene Interval_168268 chr9 78343150 78343352 + 0 NA intron (ENSMUSG00000057933.10, intron 1 of 6) protein_coding-intron (ENSMUSG00000057933.10, intron 1 of 6) -4499 ENSMUSG00000057933.10 ENSMUSG00000057933 ENSMUST00000140498 Gsta2 protein_coding Interval_12525 chr1 194825193 194825440 + 0 NA Intergenic Intergenic 3315 ENSMUSG00000092633.1 ENSMUSG00000092633 ENSMUST00000174892 Mir3962 miRNA Interval_94973 chr2 102383960 102384996 + 0 NA intron (ENSMUSG00000027189.16, intron 1 of 2) protein_coding-intron (ENSMUSG00000027189.16, intron 1 of 4) 15779 ENSMUSG00000027189.16 ENSMUSG00000027189 ENSMUST00000144110 Trim44 protein_coding Interval_57301 chr15 8602576 8603282 + 0 NA Intergenic Intergenic 52144 ENSMUSG00000103047.1 ENSMUSG00000103047 ENSMUST00000195237 Gm37310 TEC Interval_55818 chr14 100551493 100551910 + 0 NA Intergenic Intergenic -6931 ENSMUSG00000115506.1 ENSMUSG00000115506 ENSMUST00000228938 Gm49237 lincRNA Interval_96539 chr2 125505193 125507091 + 0 NA promoter-TSS (ENSMUSG00000027204.13) protein_coding-promoter-TSS (ENSMUSG00000027204.13) -70 ENSMUSG00000027204.13 ENSMUSG00000027204 ENSMUST00000148272 Fbn1 protein_coding Interval_12443 chr1 193507752 193509084 + 0 NA promoter-TSS (ENSMUSG00000065533.1) miRNA-promoter-TSS (ENSMUSG00000065533.1) -888 ENSMUSG00000065533.1 ENSMUSG00000065533 ENSMUST00000083599 Mir205 miRNA Interval_13529 chr10 19187937 19188542 + 0 NA intron (ENSMUSG00000111052.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000111052.1, intron 2 of 3) 21001 ENSMUSG00000111052.1 ENSMUSG00000111052 ENSMUST00000216683 Gm20139 lincRNA Interval_113624 chr4 57076144 57076390 + 0 NA intron (ENSMUSG00000028434.12, intron 9 of 9) protein_coding-intron (ENSMUSG00000028434.12, intron 11 of 15) -5708 ENSMUSG00000028434.12 ENSMUSG00000028434 ENSMUST00000133859 Epb41l4b protein_coding Interval_117765 chr4 126102567 126104520 + 0 NA promoter-TSS (ENSMUSG00000042608.15) protein_coding-promoter-TSS (ENSMUSG00000042608.15) -458 ENSMUSG00000042608.15 ENSMUSG00000042608 ENSMUST00000134369 Stk40 protein_coding Interval_4167 chr1 71086256 71086483 + 0 NA intron (ENSMUSG00000026196.7, intron 3 of 10) protein_coding-intron (ENSMUSG00000026196.7, intron 3 of 10) 16777 ENSMUSG00000026196.7 ENSMUSG00000026196 ENSMUST00000027393 Bard1 protein_coding Interval_14097 chr10 26949733 26950086 + 0 NA intron (ENSMUSG00000112751.1, intron 1 of 3) antisense-intron (ENSMUSG00000112751.1, intron 1 of 3) 169 ENSMUSG00000112751.1 ENSMUSG00000112751 ENSMUST00000220276 Gm48084 antisense Interval_135759 chr6 47057118 47057751 + 0 NA intron (ENSMUSG00000039419.17, intron 2 of 2) protein_coding-intron (ENSMUSG00000039419.17, intron 18 of 23) 12278 ENSMUSG00000107952.1 ENSMUSG00000107952 ENSMUST00000203583 Gm6352 processed_pseudogene Interval_32964 chr11 113394689 113395866 + 0 NA intron (ENSMUSG00000041654.15, intron 5 of 5) protein_coding-intron (ENSMUSG00000041654.15, intron 6 of 10) -72700 ENSMUSG00000078251.2 ENSMUSG00000078251 ENSMUST00000105048 Gm16487 pseudogene Interval_121708 chr5 5534229 5534520 + 0 NA Intergenic Intergenic -19462 ENSMUSG00000046798.14 ENSMUSG00000046798 ENSMUST00000134157 Cldn12 protein_coding Interval_66390 chr16 33554841 33555416 + 0 NA intron (ENSMUSG00000035506.16, intron 4 of 10) protein_coding-intron (ENSMUSG00000035506.16, intron 4 of 12) -61262 ENSMUSG00000035506.16 ENSMUSG00000035506 ENSMUST00000149291 Slc12a8 protein_coding Interval_144105 chr7 19434897 19437479 + 0 NA intron (ENSMUSG00000030397.11, intron 10 of 17) protein_coding-intron (ENSMUSG00000030397.11, intron 10 of 16) -14771 ENSMUSG00000040705.2 ENSMUSG00000040705 ENSMUST00000047020 A930016O22Rik antisense Interval_76034 chr17 74489298 74490187 + 0 NA promoter-TSS (ENSMUSG00000024072.9) protein_coding-promoter-TSS (ENSMUSG00000024072.9) -2102 ENSMUSG00000024072.9 ENSMUSG00000024072 ENSMUST00000234853 Yipf4 protein_coding Interval_15237 chr10 43578386 43581407 + 0 NA promoter-TSS (ENSMUSG00000047139.9) protein_coding-promoter-TSS (ENSMUSG00000047139.9) 1612 ENSMUSG00000047139.9 ENSMUSG00000047139 ENSMUST00000214476 Cd24a protein_coding Interval_49981 chr13 119268228 119268453 + 0 NA Intergenic Intergenic 1264 ENSMUSG00000105411.1 ENSMUSG00000105411 ENSMUST00000199467 Gm44488 miRNA Interval_104700 chr3 69531612 69531835 + 0 NA intron (ENSMUSG00000027784.10, intron 2 of 3) protein_coding-intron (ENSMUSG00000027784.10, intron 2 of 3) 34510 ENSMUSG00000027784.10 ENSMUSG00000027784 ENSMUST00000128637 Ppm1l protein_coding Interval_105489 chr3 86975292 86975479 + 0 NA Intergenic Intergenic -11166 ENSMUSG00000041750.13 ENSMUSG00000041750 ENSMUST00000041920 Cd1d2 polymorphic_pseudogene Interval_26935 chr11 61683799 61685036 + 0 NA promoter-TSS (ENSMUSG00000042377.8) protein_coding-promoter-TSS (ENSMUSG00000042377.8) -2 ENSMUSG00000042377.8 ENSMUSG00000042377 ENSMUST00000093019 Fam83g protein_coding Interval_52350 chr14 45350638 45351797 + 0 NA promoter-TSS (ENSMUSG00000053205.9) protein_coding-promoter-TSS (ENSMUSG00000053205.9) -5 ENSMUSG00000053205.9 ENSMUSG00000053205 ENSMUST00000228321 Styx protein_coding Interval_116869 chr4 117858584 117859648 + 0 NA intron (ENSMUSG00000028542.17, intron 5 of 7) protein_coding-intron (ENSMUSG00000028542.17, intron 5 of 13) 9442 ENSMUSG00000091237.1 ENSMUSG00000091237 ENSMUST00000164716 Gm17114 3prime_overlapping_ncRNA Interval_78692 chr18 17565029 17566168 + 0 NA Intergenic Intergenic 15392 ENSMUSG00000117615.1 ENSMUSG00000117615 ENSMUST00000234987 4930545E07Rik lincRNA Interval_6134 chr1 97799379 97800735 + 0 NA intron (ENSMUSG00000026335.16, intron 3 of 3) protein_coding-intron (ENSMUSG00000026335.16, intron 3 of 3) 22658 ENSMUSG00000026333.14 ENSMUSG00000026333 ENSMUST00000189031 Gin1 protein_coding Interval_153362 chr7 143967162 143967348 + 0 NA Intergenic Intergenic 34140 ENSMUSG00000099321.1 ENSMUSG00000099321 ENSMUST00000183699 Mir6404 miRNA Interval_139506 chr6 100619924 100620284 + 0 NA intron (ENSMUSG00000035378.17, intron 6 of 7) protein_coding-intron (ENSMUSG00000035378.17, intron 6 of 7) 6836 ENSMUSG00000108019.1 ENSMUSG00000108019 ENSMUST00000203525 Gm44108 processed_pseudogene Interval_23278 chr11 21122711 21123183 + 0 NA intron (ENSMUSG00000020134.13, intron 1 of 6) protein_coding-intron (ENSMUSG00000020134.13, intron 1 of 6) 23413 ENSMUSG00000084362.1 ENSMUSG00000084362 ENSMUST00000121233 2610024D14Rik processed_pseudogene Interval_76409 chr17 79998978 79999901 + 0 NA Intergenic Intergenic -17777 ENSMUSG00000117415.1 ENSMUSG00000117415 ENSMUST00000234800 Gm41625 lincRNA Interval_168148 chr9 77525171 77525629 + 0 NA intron (ENSMUSG00000032352.16, intron 1 of 13) protein_coding-intron (ENSMUSG00000032352.16, intron 1 of 13) 19448 ENSMUSG00000032352.16 ENSMUSG00000032352 ENSMUST00000183980 Lrrc1 protein_coding Interval_26647 chr11 59449776 59451025 + 0 NA promoter-TSS (ENSMUSG00000009894.15) protein_coding-promoter-TSS (ENSMUSG00000009894.15) 355 ENSMUSG00000036819.14 ENSMUSG00000036819 ENSMUST00000126158 Jmjd4 protein_coding Interval_55573 chr14 92979103 92979595 + 0 NA Intergenic Intergenic -86647 ENSMUSG00000115444.1 ENSMUSG00000115444 ENSMUST00000226166 Gm48963 processed_pseudogene Interval_136280 chr6 52482128 52482597 + 0 NA Intergenic Intergenic -10089 ENSMUSG00000107895.1 ENSMUSG00000107895 ENSMUST00000203771 1700094M24Rik lincRNA Interval_152867 chr7 138909047 138910242 + 0 NA promoter-TSS (ENSMUSG00000078566.8) protein_coding-promoter-TSS (ENSMUSG00000078566.8) -125 ENSMUSG00000078566.8 ENSMUSG00000078566 ENSMUST00000125359 Bnip3 protein_coding Interval_155151 chr8 27079313 27079499 + 0 NA Intergenic Intergenic 28632 ENSMUSG00000031485.15 ENSMUSG00000031485 ENSMUST00000211756 Plpbp protein_coding Interval_99158 chr2 157657891 157658134 + 0 NA Intergenic Intergenic 55789 ENSMUSG00000077290.1 ENSMUSG00000077290 ENSMUST00000104102 Gm25407 snoRNA Interval_150873 chr7 116092719 116094001 + 0 NA promoter-TSS (ENSMUSG00000030663.12) protein_coding-promoter-TSS (ENSMUSG00000030663.12) -262 ENSMUSG00000087621.7 ENSMUSG00000087621 ENSMUST00000206534 1700003G18Rik processed_transcript Interval_77789 chr18 3506955 3508483 + 0 NA promoter-TSS (ENSMUSG00000024232.2) protein_coding-promoter-TSS (ENSMUSG00000024232.2) -204 ENSMUSG00000024232.2 ENSMUSG00000024232 ENSMUST00000025075 Bambi protein_coding Interval_111824 chr4 31553151 31554226 + 0 NA Intergenic Intergenic 173216 ENSMUSG00000082254.1 ENSMUSG00000082254 ENSMUST00000118967 Gm11922 processed_pseudogene Interval_143975 chr7 18720694 18721059 + 0 NA intron (ENSMUSG00000044903.15, intron 2 of 4) protein_coding-intron (ENSMUSG00000044903.15, intron 2 of 4) 2786 ENSMUSG00000044903.15 ENSMUSG00000044903 ENSMUST00000108481 Psg22 protein_coding Interval_9577 chr1 159613469 159613818 + 0 NA intron (ENSMUSG00000015829.13, intron 1 of 1) protein_coding-intron (ENSMUSG00000015829.13, intron 1 of 22) 18495 ENSMUSG00000103225.1 ENSMUSG00000103225 ENSMUST00000194545 Gm37731 TEC Interval_101846 chr3 9974115 9975415 + 0 NA Intergenic Intergenic -2764 ENSMUSG00000103698.1 ENSMUSG00000103698 ENSMUST00000192578 Gm17877 processed_pseudogene Interval_1217 chr1 17239616 17240026 + 0 NA Intergenic Intergenic 10671 ENSMUSG00000100272.1 ENSMUSG00000100272 ENSMUST00000187478 Gm28785 processed_pseudogene Interval_168975 chr9 89898644 89898854 + 0 NA Intergenic Intergenic -11163 ENSMUSG00000032356.12 ENSMUSG00000032356 ENSMUST00000190073 Rasgrf1 protein_coding Interval_92277 chr2 57945625 57945878 + 0 NA Intergenic Intergenic 40266 ENSMUSG00000110205.1 ENSMUSG00000110205 ENSMUST00000209502 Gm33594 lincRNA Interval_41342 chr12 112946839 112948054 + 0 NA exon (ENSMUSG00000097476.1, exon 2 of 2) lincRNA-exon (ENSMUSG00000097476.1, exon 2 of 2) 3066 ENSMUSG00000097476.1 ENSMUSG00000097476 ENSMUST00000181436 Gm26583 lincRNA Interval_172815 chrX 50580289 50580707 + 0 NA intron (ENSMUSG00000085396.7, intron 4 of 11) processed_transcript-intron (ENSMUSG00000085396.7, intron 4 of 6) -15615 ENSMUSG00000085396.7 ENSMUSG00000085396 ENSMUST00000148530 Firre processed_transcript Interval_76876 chr17 84683173 84683613 + 0 NA promoter-TSS (ENSMUSG00000040505.13) protein_coding-promoter-TSS (ENSMUSG00000040505.13) 262 ENSMUSG00000024254.15 ENSMUSG00000024254 ENSMUST00000171915 Abcg8 protein_coding Interval_96669 chr2 127014370 127014742 + 0 NA TTS (ENSMUSG00000001998.15) protein_coding-TTS (ENSMUSG00000001998.15) 5802 ENSMUSG00000001998.15 ENSMUSG00000001998 ENSMUST00000142740 Ap4e1 protein_coding Interval_37272 chr12 64358236 64358468 + 0 NA Intergenic Intergenic 116338 ENSMUSG00000043060.8 ENSMUSG00000043060 ENSMUST00000059833 Fscb protein_coding Interval_128076 chr5 110731524 110732291 + 0 NA intron (ENSMUSG00000029505.17, intron 6 of 50) protein_coding-intron (ENSMUSG00000029505.17, intron 7 of 51) -25178 ENSMUSG00000096238.1 ENSMUSG00000096238 ENSMUST00000178031 Gm22583 snRNA Interval_8716 chr1 149856638 149857091 + 0 NA intron (ENSMUSG00000056220.14, intron 13 of 16) protein_coding-intron (ENSMUSG00000056220.14, intron 14 of 17) 15334 ENSMUSG00000077516.1 ENSMUSG00000077516 ENSMUST00000104328 n-R5s219 rRNA Interval_120219 chr4 144395794 144397050 + 0 NA intron (ENSMUSG00000028591.11, intron 1 of 3) protein_coding-intron (ENSMUSG00000028591.11, intron 1 of 3) -8446 ENSMUSG00000028590.6 ENSMUSG00000028590 ENSMUST00000133334 Pramef12os antisense Interval_157277 chr8 68918326 68919003 + 0 NA Intergenic Intergenic -31657 ENSMUSG00000110449.1 ENSMUSG00000110449 ENSMUST00000212089 Gm45780 processed_pseudogene Interval_155863 chr8 40377771 40378983 + 0 NA intron (ENSMUSG00000039478.15, intron 4 of 7) protein_coding-intron (ENSMUSG00000039478.15, intron 11 of 14) 24074 ENSMUSG00000039478.15 ENSMUSG00000039478 ENSMUST00000132481 Micu3 protein_coding Interval_168143 chr9 77488562 77488836 + 0 NA intron (ENSMUSG00000032352.16, intron 1 of 1) protein_coding-intron (ENSMUSG00000032352.16, intron 2 of 13) 56149 ENSMUSG00000032352.16 ENSMUSG00000032352 ENSMUST00000183980 Lrrc1 protein_coding Interval_127571 chr5 105444664 105445829 + 0 NA intron (ENSMUSG00000070639.5, intron 1 of 4) protein_coding-intron (ENSMUSG00000070639.5, intron 1 of 4) 29471 ENSMUSG00000070639.5 ENSMUSG00000070639 ENSMUST00000112707 Lrrc8b protein_coding Interval_17737 chr10 79820593 79821013 + 0 NA promoter-TSS (ENSMUSG00000035852.11) protein_coding-promoter-TSS (ENSMUSG00000035852.11) -3884 ENSMUSG00000035852.11 ENSMUSG00000035852 ENSMUST00000218531 Misp protein_coding Interval_145245 chr7 30873038 30873961 + 0 NA promoter-TSS (ENSMUSG00000030577.14) protein_coding-promoter-TSS (ENSMUSG00000030577.14) 766 ENSMUSG00000101029.1 ENSMUSG00000101029 ENSMUST00000189996 Gm29439 antisense Interval_128864 chr5 115700020 115700693 + 0 NA intron (ENSMUSG00000041609.16, intron 2 of 4) protein_coding-intron (ENSMUSG00000041609.16, intron 2 of 8) -50562 ENSMUSG00000041609.16 ENSMUSG00000041609 ENSMUST00000148840 Bicdl1 protein_coding Interval_129623 chr5 121397255 121398758 + 0 NA promoter-TSS (ENSMUSG00000042719.17) protein_coding-promoter-TSS (ENSMUSG00000042719.17) -4652 ENSMUSG00000106115.1 ENSMUSG00000106115 ENSMUST00000198012 Gm43420 TEC Interval_100949 chr2 173584479 173584687 + 0 NA TTS (ENSMUSG00000055897.13) transcribed_unprocessed_pseudogene-TTS (ENSMUSG00000055897.13) -6303 ENSMUSG00000027517.14 ENSMUSG00000027517 ENSMUST00000147693 Ankrd60 protein_coding Interval_51892 chr14 33388075 33388282 + 0 NA TTS (ENSMUSG00000021936.14) protein_coding-TTS (ENSMUSG00000021936.14) 3526 ENSMUSG00000021936.14 ENSMUSG00000021936 ENSMUST00000132379 Mapk8 protein_coding Interval_119033 chr4 135106204 135107093 + 0 NA Intergenic Intergenic 13799 ENSMUSG00000086884.1 ENSMUSG00000086884 ENSMUST00000146152 Gm16225 lincRNA Interval_1627 chr1 30413310 30414239 + 0 NA Intergenic Intergenic -80377 ENSMUSG00000098883.1 ENSMUSG00000098883 ENSMUST00000184585 Gm27430 miRNA Interval_120733 chr4 150336197 150336664 + 0 NA intron (ENSMUSG00000039852.17, intron 1 of 22) protein_coding-intron (ENSMUSG00000039852.17, intron 1 of 22) 15237 ENSMUSG00000089292.1 ENSMUSG00000089292 ENSMUST00000158667 Gm23209 snRNA Interval_91304 chr2 37591701 37592115 + 0 NA intron (ENSMUSG00000026915.16, intron 14 of 18) protein_coding-intron (ENSMUSG00000026915.16, intron 14 of 16) -5390 ENSMUSG00000026915.16 ENSMUSG00000026915 ENSMUST00000144206 Strbp protein_coding Interval_116272 chr4 109201534 109202579 + 0 NA intron (ENSMUSG00000028559.17, intron 1 of 23) protein_coding-intron (ENSMUSG00000028559.17, intron 1 of 23) 178 ENSMUSG00000028559.17 ENSMUSG00000028559 ENSMUST00000159758 Osbpl9 protein_coding Interval_133071 chr5 149641021 149642692 + 0 NA intron (ENSMUSG00000106674.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000106674.1, intron 1 of 1) 246 ENSMUSG00000106674.1 ENSMUSG00000106674 ENSMUST00000202583 Gm20005 lincRNA Interval_84715 chr19 15882820 15883508 + 0 NA Intergenic Intergenic -60446 ENSMUSG00000090147.1 ENSMUSG00000090147 ENSMUST00000159873 Gm3329 processed_pseudogene Interval_135574 chr6 40620927 40621559 + 0 NA Intergenic Intergenic -7933 ENSMUSG00000058250.2 ENSMUSG00000058250 ENSMUST00000076565 Tas2r138 protein_coding Interval_8727 chr1 150129974 150130262 + 0 NA Intergenic Intergenic -15850 ENSMUSG00000101199.1 ENSMUSG00000101199 ENSMUST00000189312 Gm9687 processed_pseudogene Interval_128134 chr5 111214820 111215084 + 0 NA intron (ENSMUSG00000033209.17, intron 6 of 22) protein_coding-intron (ENSMUSG00000033209.17, intron 7 of 23) 17812 ENSMUSG00000105027.1 ENSMUSG00000105027 ENSMUST00000197532 Gm43676 TEC Interval_13839 chr10 23715258 23715718 + 0 NA Intergenic Intergenic 69987 ENSMUSG00000070063.1 ENSMUSG00000070063 ENSMUST00000093556 Snora33 snoRNA Interval_1159 chr1 16325666 16325959 + 0 NA intron (ENSMUSG00000025920.19, intron 12 of 13) protein_coding-intron (ENSMUSG00000025920.19, intron 11 of 12) 72220 ENSMUSG00000089982.7 ENSMUSG00000089982 ENSMUST00000159190 Gm7568 antisense Interval_17481 chr10 77163959 77166981 + 0 NA intron (ENSMUSG00000001435.15, intron 2 of 41) protein_coding-intron (ENSMUSG00000001435.15, intron 2 of 41) 28370 ENSMUSG00000112612.1 ENSMUSG00000112612 ENSMUST00000218871 Gm7775 processed_pseudogene Interval_54650 chr14 72829305 72829519 + 0 NA intron (ENSMUSG00000115532.1, intron 2 of 5) lincRNA-intron (ENSMUSG00000115532.1, intron 2 of 5) 11832 ENSMUSG00000115611.1 ENSMUSG00000115611 ENSMUST00000228906 Gm4606 transcribed_processed_pseudogene Interval_84896 chr19 18670500 18671514 + 0 NA promoter-TSS (ENSMUSG00000024726.10) protein_coding-promoter-TSS (ENSMUSG00000024726.10) -322 ENSMUSG00000024726.10 ENSMUSG00000024726 ENSMUST00000236401 Carnmt1 protein_coding Interval_10032 chr1 165236279 165237494 + 0 NA promoter-TSS (ENSMUSG00000040843.10) protein_coding-promoter-TSS (ENSMUSG00000040843.10) -373 ENSMUSG00000040843.10 ENSMUSG00000040843 ENSMUST00000156102 Tiprl protein_coding Interval_64217 chr16 9253301 9253522 + 0 NA Intergenic Intergenic 94641 ENSMUSG00000116123.1 ENSMUSG00000116123 ENSMUST00000229655 Gm49451 lincRNA Interval_172774 chrX 48518318 48519947 + 0 NA promoter-TSS (ENSMUSG00000031104.2) protein_coding-promoter-TSS (ENSMUSG00000031104.2) -153 ENSMUSG00000031104.2 ENSMUSG00000031104 ENSMUST00000033430 Rab33a protein_coding Interval_16712 chr10 67145929 67146714 + 0 NA intron (ENSMUSG00000037876.17, intron 1 of 25) protein_coding-intron (ENSMUSG00000037876.17, intron 1 of 25) -39427 ENSMUSG00000037876.17 ENSMUSG00000037876 ENSMUST00000173236 Jmjd1c protein_coding Interval_51458 chr14 27695260 27695910 + 0 NA intron (ENSMUSG00000040640.11, intron 1 of 15) protein_coding-intron (ENSMUSG00000040640.11, intron 2 of 15) -18792 ENSMUSG00000114653.1 ENSMUSG00000114653 ENSMUST00000224481 Gm18398 processed_pseudogene Interval_66357 chr16 33357556 33358381 + 0 NA Intergenic Intergenic 22707 ENSMUSG00000097318.2 ENSMUSG00000097318 ENSMUST00000180923 1700007L15Rik bidirectional_promoter_lncRNA Interval_89836 chr2 25877409 25878482 + 0 NA promoter-TSS (ENSMUSG00000058740.14) protein_coding-promoter-TSS (ENSMUSG00000058740.14) 13977 ENSMUSG00000058740.14 ENSMUSG00000058740 ENSMUST00000199269 Kcnt1 protein_coding Interval_117331 chr4 123022694 123023311 + 0 NA intron (ENSMUSG00000028653.16, intron 1 of 9) protein_coding-intron (ENSMUSG00000028653.16, intron 1 of 10) 6405 ENSMUSG00000028653.16 ENSMUSG00000028653 ENSMUST00000141855 Trit1 protein_coding Interval_70238 chr17 7169420 7170868 + 0 NA promoter-TSS (ENSMUSG00000023809.10) protein_coding-promoter-TSS (ENSMUSG00000023809.10) 17 ENSMUSG00000023809.10 ENSMUSG00000023809 ENSMUST00000231530 Rps6ka2 protein_coding Interval_109629 chr3 145474206 145474407 + 0 NA intron (ENSMUSG00000028197.4, intron 39 of 59) protein_coding-intron (ENSMUSG00000028197.4, intron 39 of 59) 54980 ENSMUSG00000105959.1 ENSMUSG00000105959 ENSMUST00000199255 D530037P16Rik sense_overlapping Interval_91881 chr2 50984678 50984947 + 0 NA Intergenic Intergenic 75128 ENSMUSG00000083270.1 ENSMUSG00000083270 ENSMUST00000119159 Gm13498 processed_pseudogene Interval_169889 chr9 102766830 102767305 + 0 NA promoter-TSS (ENSMUSG00000102204.1) TEC-promoter-TSS (ENSMUSG00000102204.1) -558 ENSMUSG00000102204.1 ENSMUSG00000102204 ENSMUST00000192388 Gm36958 TEC Interval_3330 chr1 56977125 56978359 + 0 NA exon (ENSMUSG00000104310.1, exon 1 of 1) TEC-exon (ENSMUSG00000104310.1, exon 1 of 1) 939 ENSMUSG00000104310.1 ENSMUSG00000104310 ENSMUST00000195287 Gm4081 TEC Interval_95083 chr2 103766572 103766853 + 0 NA TTS (ENSMUSG00000027184.14) protein_coding-TTS (ENSMUSG00000027184.14) -5517 ENSMUSG00000027185.15 ENSMUSG00000027185 ENSMUST00000148798 Nat10 protein_coding Interval_31484 chr11 100957318 100959716 + 0 NA exon (ENSMUSG00000004044.9, exon 2 of 2) protein_coding-exon (ENSMUSG00000004044.9, exon 2 of 2) 12034 ENSMUSG00000004044.9 ENSMUSG00000004044 ENSMUST00000132934 Cavin1 protein_coding Interval_164053 chr9 31181319 31181592 + 0 NA intron (ENSMUSG00000031996.17, intron 1 of 15) protein_coding-intron (ENSMUSG00000031996.17, intron 1 of 16) -20133 ENSMUSG00000031996.17 ENSMUSG00000031996 ENSMUST00000213273 Aplp2 protein_coding Interval_73226 chr17 35673432 35674232 + 0 NA promoter-TSS (ENSMUSG00000001524.14) protein_coding-promoter-TSS (ENSMUSG00000001524.14) -5072 ENSMUSG00000001524.14 ENSMUSG00000001524 ENSMUST00000159852 Gtf2h4 protein_coding Interval_53925 chr14 63453188 63453640 + 0 NA intron (ENSMUSG00000035095.11, intron 3 of 3) protein_coding-intron (ENSMUSG00000035095.11, intron 3 of 3) 17005 ENSMUSG00000035095.11 ENSMUSG00000035095 ENSMUST00000128313 Fam167a protein_coding Interval_1923 chr1 34573228 34573464 + 0 NA Intergenic Intergenic -6311 ENSMUSG00000045174.10 ENSMUSG00000045174 ENSMUST00000052670 Amer3 protein_coding Interval_11468 chr1 182054569 182055785 + 0 NA Intergenic Intergenic -16226 ENSMUSG00000103379.1 ENSMUSG00000103379 ENSMUST00000193768 Gm37177 processed_pseudogene Interval_167005 chr9 64447173 64447709 + 0 NA intron (ENSMUSG00000036466.17, intron 1 of 24) protein_coding-intron (ENSMUSG00000036466.17, intron 1 of 24) 61815 ENSMUSG00000036466.17 ENSMUSG00000036466 ENSMUST00000153934 Megf11 protein_coding Interval_139638 chr6 104341483 104342268 + 0 NA Intergenic Intergenic 41749 ENSMUSG00000107074.1 ENSMUSG00000107074 ENSMUST00000200897 Gm18100 processed_pseudogene Interval_14370 chr10 31656963 31657318 + 0 NA Intergenic Intergenic 17982 ENSMUSG00000098038.1 ENSMUSG00000098038 ENSMUST00000183069 Gm8793 processed_pseudogene Interval_27297 chr11 65693782 65694160 + 0 NA intron (ENSMUSG00000033352.11, intron 1 of 2) protein_coding-intron (ENSMUSG00000033352.11, intron 8 of 10) 40861 ENSMUSG00000076460.1 ENSMUSG00000076460 ENSMUST00000103261 Mir744 miRNA Interval_41475 chr12 114788533 114788828 + 0 NA intron (ENSMUSG00000094546.1, intron 1 of 1) IG_V_gene-intron (ENSMUSG00000094546.1, intron 1 of 1) 125 ENSMUSG00000094546.1 ENSMUSG00000094546 ENSMUST00000103510 Ighv1-26 IG_V_gene Interval_17228 chr10 75134970 75136052 + 0 NA intron (ENSMUSG00000009681.10, intron 4 of 22) protein_coding-intron (ENSMUSG00000009681.10, intron 4 of 22) -40865 ENSMUSG00000009681.10 ENSMUSG00000009681 ENSMUST00000219807 Bcr protein_coding Interval_75421 chr17 66466557 66467045 + 0 NA Intergenic Intergenic 16947 ENSMUSG00000117003.1 ENSMUSG00000117003 ENSMUST00000233518 Gm49937 bidirectional_promoter_lncRNA Interval_38569 chr12 80177225 80177678 + 0 NA intron (ENSMUSG00000015143.15, intron 12 of 20) protein_coding-intron (ENSMUSG00000015143.15, intron 12 of 20) 13977 ENSMUSG00000112830.1 ENSMUSG00000112830 ENSMUST00000220316 Gm47765 processed_transcript Interval_57365 chr15 9897820 9899006 + 0 NA Intergenic Intergenic -149575 ENSMUSG00000072663.12 ENSMUSG00000072663 ENSMUST00000159368 Spef2 protein_coding Interval_117993 chr4 127535810 127536105 + 0 NA intron (ENSMUSG00000087470.2, intron 3 of 5) lincRNA-intron (ENSMUSG00000087470.2, intron 3 of 5) 61055 ENSMUSG00000087470.2 ENSMUSG00000087470 ENSMUST00000146587 A630031M04Rik lincRNA Interval_74486 chr17 51783143 51783445 + 0 NA intron (ENSMUSG00000023927.15, intron 5 of 9) protein_coding-intron (ENSMUSG00000023927.15, intron 6 of 10) 10167 ENSMUSG00000102744.1 ENSMUSG00000102744 ENSMUST00000194009 5830444F18Rik TEC Interval_154314 chr8 14339644 14340862 + 0 NA intron (ENSMUSG00000047495.15, intron 2 of 14) protein_coding-intron (ENSMUSG00000047495.15, intron 2 of 14) -9925 ENSMUSG00000106670.1 ENSMUSG00000106670 ENSMUST00000199602 Gm44347 miRNA Interval_116944 chr4 118352718 118352953 + 0 NA Intergenic Intergenic -7155 ENSMUSG00000006395.16 ENSMUSG00000006395 ENSMUST00000132882 Hyi polymorphic_pseudogene Interval_121214 chr4 154105215 154106126 + 0 NA intron (ENSMUSG00000029026.17, intron 1 of 13) protein_coding-intron (ENSMUSG00000029026.17, intron 1 of 13) 12191 ENSMUSG00000087071.1 ENSMUSG00000087071 ENSMUST00000143429 Trp73os antisense Interval_107666 chr3 109811387 109811613 + 0 NA intron (ENSMUSG00000059857.15, intron 5 of 5) protein_coding-intron (ENSMUSG00000059857.15, intron 6 of 6) 21759 ENSMUSG00000059857.15 ENSMUSG00000059857 ENSMUST00000051253 Ntng1 protein_coding Interval_154524 chr8 18935751 18938227 + 0 NA intron (ENSMUSG00000039814.15, intron 6 of 6) protein_coding-intron (ENSMUSG00000039814.15, intron 6 of 6) 4000 ENSMUSG00000088420.1 ENSMUSG00000088420 ENSMUST00000157795 Gm22551 snoRNA Interval_166043 chr9 56027337 56027628 + 0 NA promoter-TSS (ENSMUSG00000110989.1) processed_pseudogene-promoter-TSS (ENSMUSG00000110989.1) -260 ENSMUSG00000110989.1 ENSMUSG00000110989 ENSMUST00000217455 Gm7444 processed_pseudogene Interval_143236 chr7 4671775 4672347 + 0 NA intron (ENSMUSG00000063802.5, intron 4 of 5) protein_coding-intron (ENSMUSG00000063802.5, intron 4 of 7) 12600 ENSMUSG00000063802.5 ENSMUSG00000063802 ENSMUST00000206306 Hspbp1 protein_coding Interval_31738 chr11 102555650 102556711 + 0 NA promoter-TSS (ENSMUSG00000034621.14) protein_coding-promoter-TSS (ENSMUSG00000034621.14) 19 ENSMUSG00000034621.14 ENSMUSG00000034621 ENSMUST00000125754 Gpatch8 protein_coding Interval_96870 chr2 129147987 129150536 + 0 NA Intergenic Intergenic -19439 ENSMUSG00000082274.1 ENSMUSG00000082274 ENSMUST00000120625 Gm14026 processed_pseudogene Interval_139071 chr6 94754662 94756223 + 0 NA Intergenic Intergenic -43990 ENSMUSG00000107716.1 ENSMUSG00000107716 ENSMUST00000203986 Gm43997 TEC Interval_72104 chr17 28061424 28062296 + 0 NA TTS (ENSMUSG00000024219.16) protein_coding-TTS (ENSMUSG00000024219.16) 12961 ENSMUSG00000062859.15 ENSMUSG00000062859 ENSMUST00000233878 Tcp11 protein_coding Interval_68875 chr16 87736996 87737260 + 0 NA Intergenic Intergenic 24515 ENSMUSG00000088684.1 ENSMUSG00000088684 ENSMUST00000158059 Gm23994 snoRNA Interval_106943 chr3 102096068 102096326 + 0 NA intron (ENSMUSG00000027861.13, intron 1 of 11) protein_coding-intron (ENSMUSG00000027861.13, intron 1 of 10) 9651 ENSMUSG00000027861.13 ENSMUSG00000027861 ENSMUST00000159833 Casq2 protein_coding Interval_60095 chr15 65370799 65371600 + 0 NA Intergenic Intergenic -170637 ENSMUSG00000115066.1 ENSMUSG00000115066 ENSMUST00000227626 Gm49242 processed_pseudogene Interval_91086 chr2 34944713 34946687 + 0 NA intron (ENSMUSG00000026875.14, intron 5 of 6) protein_coding-intron (ENSMUSG00000026875.14, intron 7 of 8) 12436 ENSMUSG00000026875.14 ENSMUSG00000026875 ENSMUST00000135870 Traf1 protein_coding Interval_50556 chr14 15266176 15266730 + 0 NA Intergenic Intergenic 32408 ENSMUSG00000114683.1 ENSMUSG00000114683 ENSMUST00000225826 Gm47763 processed_pseudogene Interval_144651 chr7 27335997 27338012 + 0 NA intron (ENSMUSG00000040488.18, intron 1 of 32) protein_coding-intron (ENSMUSG00000040488.18, intron 1 of 32) -3356 ENSMUSG00000040488.18 ENSMUSG00000040488 ENSMUST00000206413 Ltbp4 protein_coding Interval_15230 chr10 43518628 43519164 + 0 NA intron (ENSMUSG00000111368.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000111368.1, intron 1 of 1) 325 ENSMUSG00000111368.1 ENSMUSG00000111368 ENSMUST00000216546 Gm47889 lincRNA Interval_76139 chr17 75456274 75456628 + 0 NA intron (ENSMUSG00000071042.12, intron 1 of 16) protein_coding-intron (ENSMUSG00000071042.12, intron 1 of 16) 20555 ENSMUSG00000071042.12 ENSMUSG00000071042 ENSMUST00000234011 Rasgrp3 protein_coding Interval_172001 chr9 123382710 123382958 + 0 NA intron (ENSMUSG00000035202.8, intron 3 of 20) protein_coding-intron (ENSMUSG00000035202.8, intron 3 of 20) 15880 ENSMUSG00000035202.8 ENSMUSG00000035202 ENSMUST00000215087 Lars2 protein_coding Interval_154557 chr8 19443373 19443766 + 0 NA Intergenic Intergenic 4037 ENSMUSG00000031471.3 ENSMUSG00000031471 ENSMUST00000033854 Defb8 protein_coding Interval_66161 chr16 32055449 32055742 + 0 NA intron (ENSMUSG00000022781.8, intron 1 of 14) protein_coding-intron (ENSMUSG00000022781.8, intron 1 of 14) -10315 ENSMUSG00000077460.1 ENSMUSG00000077460 ENSMUST00000104272 Gm26419 snoRNA Interval_131991 chr5 141917102 141917673 + 0 NA intron (ENSMUSG00000039683.16, intron 1 of 40) protein_coding-intron (ENSMUSG00000039683.16, intron 1 of 40) -301385 ENSMUSG00000085540.1 ENSMUSG00000085540 ENSMUST00000150385 Gm16036 antisense Interval_162766 chr9 8758452 8758703 + 0 NA Intergenic Intergenic -17589 ENSMUSG00000111602.1 ENSMUSG00000111602 ENSMUST00000214779 Gm32014 lincRNA Interval_26909 chr11 61504359 61505495 + 0 NA promoter-TSS (ENSMUSG00000001039.12) protein_coding-promoter-TSS (ENSMUSG00000001039.12) 132 ENSMUSG00000060808.4 ENSMUSG00000060808 ENSMUST00000137010 B9d1os antisense Interval_104394 chr3 65197442 65197928 + 0 NA intron (ENSMUSG00000027827.17, intron 2 of 14) protein_coding-intron (ENSMUSG00000027827.17, intron 1 of 13) 105000 ENSMUSG00000104093.1 ENSMUSG00000104093 ENSMUST00000195489 A330015K06Rik antisense Interval_14459 chr10 34030215 34030477 + 0 NA Intergenic Intergenic -10760 ENSMUSG00000019782.10 ENSMUSG00000019782 ENSMUST00000219414 Rwdd1 protein_coding Interval_57481 chr15 11638746 11639264 + 0 NA TTS (ENSMUSG00000115804.1) lincRNA-TTS (ENSMUSG00000115804.1) -8259 ENSMUSG00000115076.1 ENSMUSG00000115076 ENSMUST00000228923 Gm49106 lincRNA Interval_93669 chr2 75703508 75705339 + 0 NA promoter-TSS (ENSMUSG00000087222.1) processed_transcript-promoter-TSS (ENSMUSG00000087222.1) 66 ENSMUSG00000015839.6 ENSMUSG00000015839 ENSMUST00000152371 Nfe2l2 protein_coding Interval_123078 chr5 29451895 29452350 + 0 NA exon (ENSMUSG00000001569.10, exon 11 of 11) protein_coding-exon (ENSMUSG00000001569.10, exon 11 of 11) 10804 ENSMUSG00000001569.10 ENSMUSG00000001569 ENSMUST00000146347 Nom1 protein_coding Interval_135715 chr6 44525937 44526391 + 0 NA Intergenic Intergenic 141271 ENSMUSG00000107953.1 ENSMUSG00000107953 ENSMUST00000204867 Gm44211 processed_pseudogene Interval_91452 chr2 38973244 38973540 + 0 NA promoter-TSS (ENSMUSG00000084184.1) unprocessed_pseudogene-promoter-TSS (ENSMUSG00000084184.1) -555 ENSMUSG00000084184.1 ENSMUSG00000084184 ENSMUST00000122466 Gm13474 unprocessed_pseudogene Interval_3833 chr1 63364581 63365347 + 0 NA exon (ENSMUSG00000081643.1, exon 1 of 1) processed_pseudogene-exon (ENSMUSG00000081643.1, exon 1 of 1) 401 ENSMUSG00000081643.1 ENSMUSG00000081643 ENSMUST00000120413 Gm11605 processed_pseudogene Interval_35654 chr12 26658723 26659521 + 0 NA Intergenic Intergenic -56813 ENSMUSG00000113628.1 ENSMUSG00000113628 ENSMUST00000221140 1700020D12Rik lincRNA Interval_85854 chr19 32394226 32395172 + 0 NA Intergenic Intergenic 5483 ENSMUSG00000097787.2 ENSMUSG00000097787 ENSMUST00000181612 2700046G09Rik bidirectional_promoter_lncRNA Interval_30024 chr11 88747639 88748338 + 0 NA Intergenic Intergenic -4619 ENSMUSG00000085646.1 ENSMUSG00000085646 ENSMUST00000134567 Gm11493 lincRNA Interval_150540 chr7 112173780 112174680 + 0 NA Intergenic Intergenic -15173 ENSMUSG00000030772.6 ENSMUSG00000030772 ENSMUST00000033036 Dkk3 protein_coding Interval_90528 chr2 30974053 30974518 + 0 NA intron (ENSMUSG00000026851.9, intron 6 of 8) protein_coding-intron (ENSMUSG00000026851.9, intron 6 of 8) 7916 ENSMUSG00000026851.9 ENSMUSG00000026851 ENSMUST00000156325 BC005624 protein_coding Interval_99902 chr2 165716773 165718467 + 0 NA intron (ENSMUSG00000017897.18, intron 2 of 6) protein_coding-intron (ENSMUSG00000017897.18, intron 7 of 15) -50763 ENSMUSG00000081758.1 ENSMUSG00000081758 ENSMUST00000118200 Gm11460 processed_pseudogene Interval_119350 chr4 137072709 137072968 + 0 NA Intergenic Intergenic 44744 ENSMUSG00000085542.1 ENSMUSG00000085542 ENSMUST00000132824 1700037C06Rik lincRNA Interval_117968 chr4 127376944 127377947 + 0 NA Intergenic Intergenic -19264 ENSMUSG00000042357.2 ENSMUSG00000042357 ENSMUST00000046498 Gjb5 protein_coding Interval_36693 chr12 52107979 52108205 + 0 NA intron (ENSMUSG00000035142.18, intron 4 of 4) protein_coding-intron (ENSMUSG00000035142.18, intron 3 of 10) 29078 ENSMUSG00000112063.1 ENSMUSG00000112063 ENSMUST00000218420 Gm32220 processed_pseudogene Interval_16024 chr10 60178667 60179199 + 0 NA Intergenic Intergenic 15306 ENSMUSG00000057337.13 ENSMUSG00000057337 ENSMUST00000167915 Chst3 protein_coding Interval_90332 chr2 29819634 29821210 + 0 NA intron (ENSMUSG00000069020.9, intron 1 of 4) protein_coding-intron (ENSMUSG00000069020.9, intron 1 of 4) -6920 ENSMUSG00000069020.9 ENSMUSG00000069020 ENSMUST00000123021 Urm1 protein_coding Interval_80056 chr18 36997754 37000298 + 0 NA exon (ENSMUSG00000103770.1, exon 1 of 4) protein_coding-exon (ENSMUSG00000103770.1, exon 1 of 4) 1146 ENSMUSG00000103770.1 ENSMUSG00000103770 ENSMUST00000115659 Pcdha9 protein_coding Interval_57765 chr15 19265749 19265974 + 0 NA Intergenic Intergenic 28112 ENSMUSG00000115352.1 ENSMUSG00000115352 ENSMUST00000226570 Gm49160 lincRNA Interval_114192 chr4 66681637 66682766 + 0 NA Intergenic Intergenic 43343 ENSMUSG00000082053.1 ENSMUSG00000082053 ENSMUST00000118844 Gm11220 processed_pseudogene Interval_47475 chr13 85035904 85037455 + 0 NA Intergenic Intergenic -11243 ENSMUSG00000114313.1 ENSMUSG00000114313 ENSMUST00000224205 Gm4066 processed_pseudogene Interval_64193 chr16 8950158 8951734 + 0 NA intron (ENSMUSG00000116525.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000116525.1, intron 1 of 2) 6033 ENSMUSG00000116525.1 ENSMUSG00000116525 ENSMUST00000230927 Gm30371 lincRNA Interval_121969 chr5 12738681 12739303 + 0 NA Intergenic Intergenic -68264 ENSMUSG00000105237.1 ENSMUSG00000105237 ENSMUST00000197223 Gm42580 processed_pseudogene Interval_39951 chr12 100072879 100073755 + 0 NA Intergenic Intergenic 7500 ENSMUSG00000112999.1 ENSMUSG00000112999 ENSMUST00000221663 9530050K03Rik processed_pseudogene Interval_94611 chr2 92649219 92649714 + 0 NA Intergenic Intergenic 49759 ENSMUSG00000027221.5 ENSMUSG00000027221 ENSMUST00000065797 Chst1 protein_coding Interval_128626 chr5 114372079 114373039 + 0 NA promoter-TSS (ENSMUSG00000001098.15) protein_coding-promoter-TSS (ENSMUSG00000001098.15) -2352 ENSMUSG00000001098.15 ENSMUSG00000001098 ENSMUST00000123538 Kctd10 protein_coding Interval_23292 chr11 21209027 21209959 + 0 NA Intergenic Intergenic -2547 ENSMUSG00000084259.1 ENSMUSG00000084259 ENSMUST00000118357 Gm12040 processed_pseudogene Interval_10804 chr1 175319691 175319895 + 0 NA intron (ENSMUSG00000026527.13, intron 2 of 17) protein_coding-intron (ENSMUSG00000026527.13, intron 1 of 15) 60883 ENSMUSG00000104343.1 ENSMUSG00000104343 ENSMUST00000194955 5730408A14Rik TEC Interval_169352 chr9 96624839 96625433 + 0 NA intron (ENSMUSG00000032413.12, intron 1 of 19) protein_coding-intron (ENSMUSG00000032413.12, intron 1 of 23) 40833 ENSMUSG00000100522.1 ENSMUSG00000100522 ENSMUST00000190191 Gm19280 processed_pseudogene Interval_163779 chr9 25602738 25603757 + 0 NA intron (ENSMUSG00000036611.5, intron 7 of 7) protein_coding-intron (ENSMUSG00000036611.5, intron 7 of 7) -33442 ENSMUSG00000077697.1 ENSMUSG00000077697 ENSMUST00000104509 Gm25346 snoRNA Interval_164628 chr9 40199255 40199552 + 0 NA intron (ENSMUSG00000025602.13, intron 1 of 5) protein_coding-intron (ENSMUSG00000025602.13, intron 1 of 6) 7074 ENSMUSG00000025602.13 ENSMUSG00000025602 ENSMUST00000168832 Zfp202 protein_coding Interval_140529 chr6 119328332 119329003 + 0 NA intron (ENSMUSG00000055003.14, intron 1 of 4) protein_coding-intron (ENSMUSG00000041460.16, intron 26 of 37) 537 ENSMUSG00000055003.14 ENSMUSG00000055003 ENSMUST00000124192 Lrtm2 protein_coding Interval_90992 chr2 33981805 33982322 + 0 NA Intergenic Intergenic 3817 ENSMUSG00000086904.1 ENSMUSG00000086904 ENSMUST00000156633 Gm13404 lincRNA Interval_71337 chr17 22391586 22391789 + 0 NA Intergenic Intergenic 30234 ENSMUSG00000044501.17 ENSMUSG00000044501 ENSMUST00000121315 Zfp758 protein_coding Interval_33 GL456211.1 174044 176184 + 0 NA NA NA NA NA Interval_156037 chr8 43111005 43112345 + 0 NA Intergenic Intergenic 24918 ENSMUSG00000031651.5 ENSMUSG00000031651 ENSMUST00000211541 Triml1 protein_coding Interval_105272 chr3 84423095 84423328 + 0 NA Intergenic Intergenic -43290 ENSMUSG00000104004.1 ENSMUSG00000104004 ENSMUST00000192777 4930565D16Rik lincRNA Interval_99692 chr2 164343549 164343864 + 0 NA Intergenic Intergenic 10256 ENSMUSG00000017004.7 ENSMUSG00000017004 ENSMUST00000149370 Svs5 protein_coding Interval_78110 chr18 8323485 8323860 + 0 NA Intergenic Intergenic -91457 ENSMUSG00000117484.1 ENSMUSG00000117484 ENSMUST00000234117 Gm5500 processed_pseudogene Interval_151283 chr7 120661202 120662491 + 0 NA intron (ENSMUSG00000030887.4, intron 2 of 2) protein_coding-intron (ENSMUSG00000030887.4, intron 3 of 3) -8450 ENSMUSG00000108935.1 ENSMUSG00000108935 ENSMUST00000208075 4930588G17Rik antisense Interval_89217 chr2 18135040 18135993 + 0 NA intron (ENSMUSG00000026743.16, intron 8 of 22) protein_coding-intron (ENSMUSG00000026743.16, intron 8 of 22) -5939 ENSMUSG00000092814.1 ENSMUSG00000092814 ENSMUST00000175073 Gm23638 miRNA Interval_86387 chr19 39901289 39902362 + 0 NA Intergenic Intergenic -15026 ENSMUSG00000092008.2 ENSMUSG00000092008 ENSMUST00000168838 Cyp2c69 protein_coding Interval_60445 chr15 73791797 73792791 + 0 NA intron (ENSMUSG00000072487.11, intron 8 of 29) protein_coding-intron (ENSMUSG00000072487.11, intron 5 of 10) 17602 ENSMUSG00000083380.1 ENSMUSG00000083380 ENSMUST00000120938 Ndufb4c processed_pseudogene Interval_154957 chr8 25269737 25270033 + 0 NA Intergenic Intergenic 36385 ENSMUSG00000110140.1 ENSMUSG00000110140 ENSMUST00000209774 5430421F17Rik lincRNA Interval_165630 chr9 50520403 50520773 + 0 NA Intergenic Intergenic 5239 ENSMUSG00000032067.6 ENSMUSG00000032067 ENSMUST00000214907 Pts protein_coding Interval_75779 chr17 71286020 71286215 + 0 NA intron (ENSMUSG00000024053.11, intron 1 of 2) protein_coding-intron (ENSMUSG00000024053.11, intron 2 of 7) 24164 ENSMUSG00000024053.11 ENSMUSG00000024053 ENSMUST00000233659 Emilin2 protein_coding Interval_172680 chrX 42059308 42060466 + 0 NA promoter-TSS (ENSMUSG00000025860.15) protein_coding-promoter-TSS (ENSMUSG00000025860.15) -34 ENSMUSG00000025860.15 ENSMUSG00000025860 ENSMUST00000026978 Xiap protein_coding Interval_149464 chr7 98797245 98798538 + 0 NA Intergenic Intergenic -49915 ENSMUSG00000015957.12 ENSMUSG00000015957 ENSMUST00000208062 Wnt11 protein_coding Interval_6645 chr1 118494782 118495051 + 0 NA intron (ENSMUSG00000064302.13, intron 1 of 32) protein_coding-intron (ENSMUSG00000064302.13, intron 8 of 39) -15325 ENSMUSG00000100770.1 ENSMUSG00000100770 ENSMUST00000190678 Gm28466 processed_pseudogene Interval_70344 chr17 8687877 8688848 + 0 NA intron (ENSMUSG00000023868.17, intron 1 of 3) protein_coding-intron (ENSMUSG00000023868.17, intron 1 of 21) -68656 ENSMUSG00000023868.17 ENSMUSG00000023868 ENSMUST00000115708 Pde10a protein_coding Interval_9390 chr1 156741647 156742495 + 0 NA Intergenic Intergenic -43186 ENSMUSG00000033557.17 ENSMUSG00000033557 ENSMUST00000147931 Fam20b protein_coding Interval_64786 chr16 15733024 15733231 + 0 NA intron (ENSMUSG00000022672.8, intron 45 of 85) protein_coding-intron (ENSMUSG00000022672.8, intron 45 of 85) -17796 ENSMUSG00000116118.1 ENSMUSG00000116118 ENSMUST00000229449 Gm49511 processed_pseudogene Interval_139909 chr6 112624077 112625058 + 0 NA intron (ENSMUSG00000030254.16, intron 6 of 6) protein_coding-intron (ENSMUSG00000030254.16, intron 13 of 13) 19023 ENSMUSG00000029633.9 ENSMUSG00000029633 ENSMUST00000121490 Gm5578 processed_pseudogene Interval_111179 chr4 14275404 14275630 + 0 NA Intergenic Intergenic 35899 ENSMUSG00000087919.1 ENSMUSG00000087919 ENSMUST00000157294 Gm24908 snoRNA Interval_37520 chr12 69537002 69538691 + 0 NA Intergenic Intergenic 23491 ENSMUSG00000095776.1 ENSMUSG00000095776 ENSMUST00000177928 Gm23018 miRNA Interval_19747 chr10 108444208 108447035 + 0 NA promoter-TSS (ENSMUSG00000112532.1) lincRNA-promoter-TSS (ENSMUSG00000112532.1) -981 ENSMUSG00000112532.1 ENSMUSG00000112532 ENSMUST00000220211 Gm36283 lincRNA Interval_106706 chr3 99240425 99241705 + 0 NA intron (ENSMUSG00000027868.11, intron 1 of 2) protein_coding-intron (ENSMUSG00000027868.11, intron 1 of 2) 684 ENSMUSG00000027868.11 ENSMUSG00000027868 ENSMUST00000150756 Tbx15 protein_coding Interval_638 chr1 9350043 9350356 + 0 NA Intergenic Intergenic 48488 ENSMUSG00000101571.2 ENSMUSG00000101571 ENSMUST00000040649 Gm6187 processed_pseudogene Interval_82733 chr18 76288240 76289493 + 0 NA intron (ENSMUSG00000024563.16, intron 2 of 4) protein_coding-intron (ENSMUSG00000024563.16, intron 4 of 10) -32958 ENSMUSG00000117816.1 ENSMUSG00000117816 ENSMUST00000235901 Gm50360 processed_pseudogene Interval_169764 chr9 101053257 101054291 + 0 NA exon (ENSMUSG00000100563.1, exon 1 of 1) processed_pseudogene-exon (ENSMUSG00000100563.1, exon 1 of 1) 232 ENSMUSG00000100563.1 ENSMUSG00000100563 ENSMUST00000185770 Gm3096 processed_pseudogene Interval_37424 chr12 68307976 68308252 + 0 NA Intergenic Intergenic -24508 ENSMUSG00000113655.1 ENSMUSG00000113655 ENSMUST00000221702 Gm47454 TEC Interval_161254 chr8 119278702 119279068 + 0 NA intron (ENSMUSG00000031841.19, intron 1 of 3) protein_coding-intron (ENSMUSG00000031841.19, intron 10 of 13) -65631 ENSMUSG00000031839.7 ENSMUSG00000031839 ENSMUST00000212795 Hsbp1 protein_coding Interval_102487 chr3 27143657 27144165 + 0 NA intron (ENSMUSG00000027699.19, intron 6 of 23) protein_coding-intron (ENSMUSG00000027699.19, intron 6 of 18) 3290 ENSMUSG00000027699.19 ENSMUSG00000027699 ENSMUST00000175857 Ect2 protein_coding Interval_100507 chr2 169736211 169737006 + 0 NA intron (ENSMUSG00000047907.11, intron 1 of 2) protein_coding-intron (ENSMUSG00000047907.11, intron 1 of 1) -108290 ENSMUSG00000103662.1 ENSMUSG00000103662 ENSMUST00000191912 Gm34294 TEC Interval_119291 chr4 136680727 136681277 + 0 NA intron (ENSMUSG00000028664.14, intron 2 of 5) protein_coding-intron (ENSMUSG00000028664.14, intron 6 of 15) 13038 ENSMUSG00000028664.14 ENSMUSG00000028664 ENSMUST00000144573 Ephb2 protein_coding Interval_138590 chr6 89679325 89680975 + 0 NA Intergenic Intergenic 19367 ENSMUSG00000100128.1 ENSMUSG00000100128 ENSMUST00000173545 Vmn1r-ps25 unprocessed_pseudogene Interval_110493 chr3 159627555 159627851 + 0 NA Intergenic Intergenic 28485 ENSMUSG00000028174.12 ENSMUSG00000028174 ENSMUST00000029824 Rpe65 protein_coding Interval_20974 chr10 122931507 122932205 + 0 NA intron (ENSMUSG00000034613.12, intron 4 of 4) protein_coding-intron (ENSMUSG00000034613.12, intron 9 of 9) 36488 ENSMUSG00000034613.12 ENSMUSG00000034613 ENSMUST00000162969 Ppm1h protein_coding Interval_156005 chr8 41867288 41867724 + 0 NA intron (ENSMUSG00000102046.1, intron 1 of 5) lincRNA-intron (ENSMUSG00000102046.1, intron 1 of 5) 40239 ENSMUSG00000102046.1 ENSMUSG00000102046 ENSMUST00000188324 2810404M03Rik lincRNA Interval_31965 chr11 104211496 104211769 + 0 NA Intergenic Intergenic -19947 ENSMUSG00000018411.17 ENSMUSG00000018411 ENSMUST00000126820 Mapt protein_coding Interval_4856 chr1 80293108 80293389 + 0 NA intron (ENSMUSG00000004364.14, intron 3 of 5) protein_coding-intron (ENSMUSG00000004364.14, intron 3 of 15) -16835 ENSMUSG00000103076.1 ENSMUSG00000103076 ENSMUST00000192839 Gm37902 TEC Interval_76506 chr17 80644583 80647031 + 0 NA intron (ENSMUSG00000024242.15, intron 8 of 32) protein_coding-intron (ENSMUSG00000024242.15, intron 8 of 33) -20821 ENSMUSG00000024242.15 ENSMUSG00000024242 ENSMUST00000234486 Map4k3 protein_coding Interval_1854 chr1 34156113 34157054 + 0 NA intron (ENSMUSG00000026131.20, intron 10 of 32) protein_coding-intron (ENSMUSG00000026131.20, intron 9 of 97) 21863 ENSMUSG00000096992.3 ENSMUSG00000096992 ENSMUST00000187268 Gm26788 processed_transcript Interval_115423 chr4 98816756 98818040 + 0 NA intron (ENSMUSG00000035407.8, intron 1 of 9) protein_coding-intron (ENSMUSG00000035407.8, intron 1 of 9) 2926 ENSMUSG00000073794.3 ENSMUSG00000073794 ENSMUST00000168045 I0C0044D17Rik protein_coding Interval_99359 chr2 160148546 160149103 + 0 NA Intergenic Intergenic 132171 ENSMUSG00000086653.1 ENSMUSG00000086653 ENSMUST00000140319 9130015L21Rik lincRNA Interval_150333 chr7 109671274 109672532 + 0 NA intron (ENSMUSG00000031024.13, intron 1 of 3) protein_coding-intron (ENSMUSG00000031024.13, intron 1 of 3) -27622 ENSMUSG00000109499.1 ENSMUSG00000109499 ENSMUST00000207292 Gm44864 antisense Interval_35967 chr12 32923885 32924653 + 0 NA TTS (ENSMUSG00000097494.7) lincRNA-TTS (ENSMUSG00000097494.7) 5678 ENSMUSG00000112124.1 ENSMUSG00000112124 ENSMUST00000218220 Gm19056 processed_pseudogene Interval_27740 chr11 69740079 69740405 + 0 NA intron (ENSMUSG00000005198.15, intron 20 of 27) protein_coding-intron (ENSMUSG00000005198.15, intron 20 of 28) -2894 ENSMUSG00000005198.15 ENSMUSG00000005198 ENSMUST00000151586 Polr2a protein_coding Interval_52741 chr14 49259593 49260271 + 0 NA Intergenic Intergenic -14504 ENSMUSG00000021850.14 ENSMUSG00000021850 ENSMUST00000130853 ccdc198 protein_coding Interval_173639 chrX 101358746 101359313 + 0 NA Intergenic Intergenic -24707 ENSMUSG00000047797.14 ENSMUSG00000047797 ENSMUST00000119190 Gjb1 protein_coding Interval_66928 chr16 38576801 38577239 + 0 NA intron (ENSMUSG00000002845.14, intron 4 of 8) protein_coding-intron (ENSMUSG00000002845.14, intron 4 of 8) -3720 ENSMUSG00000091238.1 ENSMUSG00000091238 ENSMUST00000168897 Gm17103 antisense Interval_139625 chr6 103719345 103719577 + 0 NA intron (ENSMUSG00000030077.11, intron 25 of 26) protein_coding-intron (ENSMUSG00000030077.11, intron 26 of 26) 21711 ENSMUSG00000030077.11 ENSMUSG00000030077 ENSMUST00000205098 Chl1 protein_coding Interval_2896 chr1 48596728 48597106 + 0 NA Intergenic Intergenic 69278 ENSMUSG00000100866.1 ENSMUSG00000100866 ENSMUST00000188192 Gm28830 processed_pseudogene Interval_77378 chr17 88324991 88326463 + 0 NA intron (ENSMUSG00000117351.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000117351.1, intron 1 of 1) 16755 ENSMUSG00000088791.1 ENSMUSG00000088791 ENSMUST00000158166 Gm22542 snRNA Interval_51047 chr14 21779188 21779437 + 0 NA intron (ENSMUSG00000021770.11, intron 2 of 5) protein_coding-intron (ENSMUSG00000021770.11, intron 2 of 5) 28764 ENSMUSG00000021770.11 ENSMUSG00000021770 ENSMUST00000142023 Samd8 protein_coding Interval_48469 chr13 99244650 99246052 + 0 NA intron (ENSMUSG00000050919.9, intron 4 of 4) protein_coding-intron (ENSMUSG00000050919.9, intron 4 of 4) 60528 ENSMUSG00000050919.9 ENSMUSG00000050919 ENSMUST00000056558 Zfp366 protein_coding Interval_32484 chr11 107833065 107833673 + 0 NA Intergenic Intergenic 5995 ENSMUSG00000088279.1 ENSMUSG00000088279 ENSMUST00000157654 Gm23120 misc_RNA Interval_85549 chr19 28412689 28413025 + 0 NA intron (ENSMUSG00000052942.13, intron 4 of 10) protein_coding-intron (ENSMUSG00000052942.13, intron 3 of 9) -112432 ENSMUSG00000052942.13 ENSMUSG00000052942 ENSMUST00000161328 Glis3 protein_coding Interval_131878 chr5 140549118 140550663 + 0 NA Intergenic Intergenic 3455 ENSMUSG00000105633.1 ENSMUSG00000105633 ENSMUST00000200135 Gm32158 processed_pseudogene Interval_65463 chr16 22476729 22477786 + 0 NA intron (ENSMUSG00000022861.17, intron 24 of 24) protein_coding-intron (ENSMUSG00000022861.17, intron 23 of 23) -34223 ENSMUSG00000089874.1 ENSMUSG00000089874 ENSMUST00000159309 9230117E06Rik antisense Interval_30767 chr11 96345616 96346746 + 0 NA exon (ENSMUSG00000048763.11, exon 2 of 2) protein_coding-exon (ENSMUSG00000048763.11, exon 2 of 2) -4073 ENSMUSG00000075589.3 ENSMUSG00000075589 ENSMUST00000130733 Gm11536 antisense Interval_95501 chr2 110362164 110363306 + 0 NA exon (ENSMUSG00000074971.4, exon 1 of 1) protein_coding-exon (ENSMUSG00000074971.4, exon 1 of 1) 448 ENSMUSG00000074971.4 ENSMUSG00000074971 ENSMUST00000099626 Fibin protein_coding Interval_26035 chr11 53604900 53605866 + 0 NA intron (ENSMUSG00000000869.12, intron 3 of 3) protein_coding-intron (ENSMUSG00000000869.12, intron 3 of 3) 11955 ENSMUSG00000000869.12 ENSMUSG00000000869 ENSMUST00000000889 Il4 protein_coding Interval_129114 chr5 117493153 117494463 + 0 NA intron (ENSMUSG00000061578.8, intron 1 of 20) protein_coding-intron (ENSMUSG00000061578.8, intron 1 of 3) -26891 ENSMUSG00000107199.1 ENSMUSG00000107199 ENSMUST00000201553 Gm42550 TEC Interval_56667 chr14 121278893 121279544 + 0 NA intron (ENSMUSG00000025555.14, intron 24 of 26) protein_coding-intron (ENSMUSG00000025555.14, intron 24 of 26) 30512 ENSMUSG00000085133.2 ENSMUSG00000085133 ENSMUST00000130256 B930095G15Rik sense_intronic Interval_124041 chr5 37752084 37752825 + 0 NA Intergenic Intergenic 15174 ENSMUSG00000062329.4 ENSMUSG00000062329 ENSMUST00000201048 Cytl1 protein_coding Interval_121527 chr5 3218643 3220338 + 0 NA Intergenic Intergenic 7155 ENSMUSG00000105800.1 ENSMUSG00000105800 ENSMUST00000196472 Gm18985 unprocessed_pseudogene Interval_162122 chr8 125336783 125337095 + 0 NA Intergenic Intergenic -109616 ENSMUSG00000086694.1 ENSMUSG00000086694 ENSMUST00000156666 Gm16237 antisense Interval_93432 chr2 73023712 73024325 + 0 NA Intergenic Intergenic -37302 ENSMUSG00000079286.1 ENSMUSG00000079286 ENSMUST00000112062 Gm11084 protein_coding Interval_138695 chr6 91224247 91224688 + 0 NA intron (ENSMUSG00000064080.12, intron 2 of 2) protein_coding-intron (ENSMUSG00000064080.12, intron 1 of 17) 11640 ENSMUSG00000064080.12 ENSMUSG00000064080 ENSMUST00000137029 Fbln2 protein_coding Interval_33129 chr11 114639547 114642741 + 0 NA Intergenic Intergenic -23464 ENSMUSG00000083769.1 ENSMUSG00000083769 ENSMUST00000120766 Gm11689 processed_pseudogene Interval_44955 chr13 50899610 50899876 + 0 NA Intergenic Intergenic -39587 ENSMUSG00000113509.1 ENSMUSG00000113509 ENSMUST00000223072 Gm19009 processed_pseudogene Interval_14256 chr10 29855416 29856248 + 0 NA Intergenic Intergenic 74421 ENSMUSG00000111427.1 ENSMUSG00000111427 ENSMUST00000215034 Gm6390 processed_pseudogene Interval_81657 chr18 62940612 62940814 + 0 NA intron (ENSMUSG00000071847.13, intron 3 of 4) protein_coding-intron (ENSMUSG00000071847.13, intron 4 of 5) 18207 ENSMUSG00000071847.13 ENSMUSG00000071847 ENSMUST00000236605 Apcdd1 protein_coding Interval_141165 chr6 125363045 125364383 + 0 NA exon (ENSMUSG00000038167.6, exon 16 of 17) protein_coding-exon (ENSMUSG00000038167.6, exon 16 of 17) 5949 ENSMUSG00000030341.17 ENSMUSG00000030341 ENSMUST00000134803 Tnfrsf1a protein_coding Interval_150883 chr7 116167141 116168605 + 0 NA intron (ENSMUSG00000045659.18, intron 9 of 18) protein_coding-intron (ENSMUSG00000045659.18, intron 7 of 24) -38348 ENSMUSG00000045659.18 ENSMUSG00000045659 ENSMUST00000205446 Plekha7 protein_coding Interval_43729 chr13 35816034 35816271 + 0 NA TTS (ENSMUSG00000059288.14) protein_coding-TTS (ENSMUSG00000059288.14) 17402 ENSMUSG00000114555.1 ENSMUSG00000114555 ENSMUST00000224988 Gm48706 TEC Interval_48691 chr13 101417833 101418462 + 0 NA intron (ENSMUSG00000100733.2, intron 6 of 8) lincRNA-intron (ENSMUSG00000100733.2, intron 2 of 6) 25104 ENSMUSG00000103437.1 ENSMUSG00000103437 ENSMUST00000192941 Gm36994 TEC Interval_10730 chr1 173689791 173690542 + 0 NA intron (ENSMUSG00000066677.12, intron 3 of 5) protein_coding-intron (ENSMUSG00000066677.12, intron 4 of 6) -11549 ENSMUSG00000103105.5 ENSMUSG00000103105 ENSMUST00000193627 Gm18752 transcribed_unprocessed_pseudogene Interval_30683 chr11 95875567 95876724 + 0 NA exon (ENSMUSG00000013418.8, exon 6 of 11) protein_coding-exon (ENSMUSG00000013418.8, exon 6 of 11) 1067 ENSMUSG00000086255.1 ENSMUSG00000086255 ENSMUST00000129261 Gm11534 antisense Interval_80519 chr18 43281473 43282741 + 0 NA intron (ENSMUSG00000039954.9, intron 5 of 11) protein_coding-intron (ENSMUSG00000039954.9, intron 5 of 12) 74430 ENSMUSG00000039954.9 ENSMUSG00000039954 ENSMUST00000235682 Stk32a protein_coding Interval_34887 chr12 12986643 12987975 + 0 NA promoter-TSS (ENSMUSG00000113220.1) lincRNA-promoter-TSS (ENSMUSG00000113220.1) -8 ENSMUSG00000113220.1 ENSMUSG00000113220 ENSMUST00000221590 Gm35208 lincRNA Interval_95562 chr2 112284126 112284951 + 0 NA promoter-TSS (ENSMUSG00000027130.15) protein_coding-promoter-TSS (ENSMUSG00000027130.15) 18224 ENSMUSG00000096764.1 ENSMUSG00000096764 ENSMUST00000141047 Gm21985 protein_coding Interval_123682 chr5 34485705 34486215 + 0 NA TTS (ENSMUSG00000037210.16) protein_coding-TTS (ENSMUSG00000037210.16) -1354 ENSMUSG00000106678.1 ENSMUSG00000106678 ENSMUST00000200867 Gm43457 TEC Interval_16375 chr10 62564525 62564768 + 0 NA intron (ENSMUSG00000036955.16, intron 1 of 2) protein_coding-intron (ENSMUSG00000036955.16, intron 5 of 6) 3772 ENSMUSG00000036955.16 ENSMUSG00000036955 ENSMUST00000159722 Kifbp protein_coding Interval_140558 chr6 119504231 119506436 + 0 NA intron (ENSMUSG00000030170.14, intron 1 of 4) protein_coding-intron (ENSMUSG00000030170.14, intron 1 of 4) 25665 ENSMUSG00000030019.6 ENSMUSG00000030019 ENSMUST00000032094 Fbxl14 protein_coding Interval_98851 chr2 155584096 155586132 + 0 NA exon (ENSMUSG00000027605.18, exon 20 of 20) protein_coding-exon (ENSMUSG00000027605.18, exon 20 of 20) -6767 ENSMUSG00000085317.1 ENSMUSG00000085317 ENSMUST00000155884 Gssos2 antisense Interval_114164 chr4 65573346 65573563 + 0 NA intron (ENSMUSG00000028373.16, intron 16 of 21) protein_coding-intron (ENSMUSG00000028373.16, intron 17 of 22) -31795 ENSMUSG00000051675.13 ENSMUSG00000051675 ENSMUST00000156922 Trim32 protein_coding Interval_96699 chr2 127260637 127260971 + 0 NA exon (ENSMUSG00000034850.15, exon 4 of 4) protein_coding-exon (ENSMUSG00000034850.15, exon 4 of 4) 9250 ENSMUSG00000103957.1 ENSMUSG00000103957 ENSMUST00000192976 Gm10766 TEC Interval_153482 chr7 145127065 145128268 + 0 NA Intergenic Intergenic -35330 ENSMUSG00000108967.1 ENSMUSG00000108967 ENSMUST00000207878 Gm45181 lincRNA Interval_139964 chr6 113093166 113093363 + 0 NA intron (ENSMUSG00000034269.12, intron 1 of 2) protein_coding-intron (ENSMUSG00000034269.12, intron 1 of 21) -16073 ENSMUSG00000086429.9 ENSMUSG00000086429 ENSMUST00000159544 Gt(ROSA)26Sor antisense Interval_64478 chr16 11843607 11844103 + 0 NA intron (ENSMUSG00000065979.12, intron 2 of 2) protein_coding-intron (ENSMUSG00000065979.12, intron 2 of 3) -57508 ENSMUSG00000055015.5 ENSMUSG00000055015 ENSMUST00000068397 Gm9961 lincRNA Interval_89678 chr2 24485355 24485714 + 0 NA intron (ENSMUSG00000085057.7, intron 5 of 5) processed_transcript-intron (ENSMUSG00000085057.7, intron 5 of 5) 2039 ENSMUSG00000099120.1 ENSMUSG00000099120 ENSMUST00000184217 Gm27193 transcribed_processed_pseudogene Interval_1422 chr1 22099865 22101422 + 0 NA Intergenic Intergenic -70028 ENSMUSG00000099692.1 ENSMUSG00000099692 ENSMUST00000189850 Gm5696 processed_pseudogene Interval_125424 chr5 66996307 66997778 + 0 NA promoter-TSS (ENSMUSG00000037736.20) protein_coding-promoter-TSS (ENSMUSG00000037736.20) -5835 ENSMUSG00000086964.1 ENSMUSG00000086964 ENSMUST00000150616 Gm15948 antisense Interval_120747 chr4 150405908 150406874 + 0 NA promoter-TSS (ENSMUSG00000039852.17) protein_coding-promoter-TSS (ENSMUSG00000039852.17) 85198 ENSMUSG00000089292.1 ENSMUSG00000089292 ENSMUST00000158667 Gm23209 snRNA Interval_41553 chr12 116242480 116242772 + 0 NA promoter-TSS (ENSMUSG00000096694.1) miRNA-promoter-TSS (ENSMUSG00000096694.1) -59 ENSMUSG00000096694.1 ENSMUSG00000096694 ENSMUST00000180307 Gm23190 miRNA Interval_156692 chr8 57345377 57345597 + 0 NA exon (ENSMUSG00000097910.2, exon 2 of 2) lincRNA-exon (ENSMUSG00000097910.2, exon 2 of 2) 4687 ENSMUSG00000097910.2 ENSMUSG00000097910 ENSMUST00000210633 5033428I22Rik lincRNA Interval_106064 chr3 92150616 92151114 + 0 NA Intergenic Intergenic -8121 ENSMUSG00000027927.5 ENSMUSG00000027927 ENSMUST00000029535 Lelp1 protein_coding Interval_56525 chr14 119986090 119987366 + 0 NA Intergenic Intergenic 55707 ENSMUSG00000044819.5 ENSMUSG00000044819 ENSMUST00000058213 Oxgr1 protein_coding Interval_139729 chr6 108172151 108172797 + 0 NA intron (ENSMUSG00000030101.15, intron 2 of 7) protein_coding-intron (ENSMUSG00000030101.15, intron 3 of 8) 13082 ENSMUSG00000030101.15 ENSMUSG00000030101 ENSMUST00000171697 Sumf1 protein_coding Interval_141172 chr6 125407338 125407607 + 0 NA Intergenic Intergenic -26679 ENSMUSG00000038167.6 ENSMUSG00000038167 ENSMUST00000042647 Plekhg6 protein_coding Interval_114306 chr4 72124927 72125270 + 0 NA intron (ENSMUSG00000008305.18, intron 13 of 17) protein_coding-intron (ENSMUSG00000008305.18, intron 15 of 19) 16215 ENSMUSG00000008305.18 ENSMUSG00000008305 ENSMUST00000134225 Tle1 protein_coding Interval_106447 chr3 96409373 96410457 + 0 NA promoter-TSS (ENSMUSG00000097041.1) processed_pseudogene-promoter-TSS (ENSMUSG00000097041.1) -856 ENSMUSG00000097041.1 ENSMUSG00000097041 ENSMUST00000181263 Pafah1b1-ps1 processed_pseudogene Interval_67927 chr16 59600345 59601473 + 0 NA promoter-TSS (ENSMUSG00000022723.16) protein_coding-promoter-TSS (ENSMUSG00000022723.16) 38220 ENSMUSG00000022722.18 ENSMUSG00000022722 ENSMUST00000149797 Arl6 protein_coding Interval_164369 chr9 36311637 36311869 + 0 NA Intergenic Intergenic -53430 ENSMUSG00000066767.6 ENSMUSG00000066767 ENSMUST00000086108 Gm3867 transcribed_processed_pseudogene Interval_65499 chr16 22832469 22833225 + 0 NA intron (ENSMUSG00000004462.7, intron 3 of 3) protein_coding-intron (ENSMUSG00000004462.7, intron 3 of 7) -21270 ENSMUSG00000033501.5 ENSMUSG00000033501 ENSMUST00000040592 Crygs protein_coding Interval_46252 chr13 63034707 63035090 + 0 NA intron (ENSMUSG00000021458.17, intron 2 of 15) protein_coding-intron (ENSMUSG00000021458.17, intron 2 of 15) 24939 ENSMUSG00000113708.1 ENSMUSG00000113708 ENSMUST00000220958 Gm47584 TEC Interval_157368 chr8 69901337 69903788 + 0 NA promoter-TSS (ENSMUSG00000036199.9) protein_coding-promoter-TSS (ENSMUSG00000036199.9) -4 ENSMUSG00000036199.9 ENSMUSG00000036199 ENSMUST00000110167 Ndufa13 protein_coding Interval_25272 chr11 46038812 46039757 + 0 NA Intergenic Intergenic 2844 ENSMUSG00000082870.1 ENSMUSG00000082870 ENSMUST00000117047 Gm12165 processed_pseudogene Interval_127362 chr5 103418057 103419812 + 0 NA Intergenic Intergenic -62236 ENSMUSG00000104684.1 ENSMUSG00000104684 ENSMUST00000200007 5430427N15Rik lincRNA Interval_139522 chr6 100760606 100760847 + 0 NA intron (ENSMUSG00000030074.9, intron 3 of 6) protein_coding-intron (ENSMUSG00000030074.9, intron 3 of 6) -31103 ENSMUSG00000107989.1 ENSMUSG00000107989 ENSMUST00000203856 Gm19692 TEC Interval_1654 chr1 30819302 30819935 + 0 NA TTS (ENSMUSG00000048874.15) protein_coding-TTS (ENSMUSG00000048874.15) -8906 ENSMUSG00000048874.15 ENSMUSG00000048874 ENSMUST00000185604 Phf3 protein_coding Interval_159112 chr8 90779205 90779464 + 0 NA Intergenic Intergenic 11613 ENSMUSG00000105321.1 ENSMUSG00000105321 ENSMUST00000198683 Gm44382 miRNA Interval_20098 chr10 114535322 114536399 + 0 NA intron (ENSMUSG00000050663.8, intron 6 of 18) protein_coding-intron (ENSMUSG00000050663.8, intron 6 of 18) 185386 ENSMUSG00000104335.1 ENSMUSG00000104335 ENSMUST00000192301 Gm38281 TEC Interval_19475 chr10 99929484 99929689 + 0 NA Intergenic Intergenic -59035 ENSMUSG00000112299.1 ENSMUSG00000112299 ENSMUST00000219489 Gm17870 processed_pseudogene Interval_75150 chr17 64050428 64050616 + 0 NA intron (ENSMUSG00000000127.15, intron 14 of 17) protein_coding-intron (ENSMUSG00000000127.15, intron 14 of 17) -186731 ENSMUSG00000045506.3 ENSMUSG00000045506 ENSMUST00000050753 A930002H24Rik protein_coding Interval_84993 chr19 21052136 21052406 + 0 NA Intergenic Intergenic -52439 ENSMUSG00000118047.1 ENSMUSG00000118047 ENSMUST00000237768 4930554I06Rik lincRNA Interval_81470 chr18 60962275 60963661 + 0 NA promoter-TSS (ENSMUSG00000024617.16) protein_coding-promoter-TSS (ENSMUSG00000024617.16) 4895 ENSMUSG00000098475.1 ENSMUSG00000098475 ENSMUST00000184354 Mir6982 miRNA Interval_62501 chr15 93533660 93533887 + 0 NA intron (ENSMUSG00000036158.12, intron 1 of 7) protein_coding-intron (ENSMUSG00000036158.12, intron 1 of 7) -14250 ENSMUSG00000036158.12 ENSMUSG00000036158 ENSMUST00000048982 Prickle1 protein_coding Interval_59726 chr15 58922106 58922310 + 0 NA intron (ENSMUSG00000050891.10, intron 3 of 9) protein_coding-intron (ENSMUSG00000050891.10, intron 4 of 11) -6030 ENSMUSG00000050891.10 ENSMUSG00000050891 ENSMUST00000228230 Tatdn1 protein_coding Interval_63882 chr16 4231461 4231799 + 0 NA TTS (ENSMUSG00000089645.3) transcribed_processed_pseudogene-TTS (ENSMUSG00000089645.3) 1329 ENSMUSG00000089645.3 ENSMUSG00000089645 ENSMUST00000161633 Gm5766 transcribed_processed_pseudogene Interval_151370 chr7 121874351 121874556 + 0 NA intron (ENSMUSG00000030873.9, intron 1 of 12) protein_coding-intron (ENSMUSG00000030873.9, intron 1 of 12) 8064 ENSMUSG00000034951.10 ENSMUSG00000034951 ENSMUST00000148634 Cog7 protein_coding Interval_56413 chr14 118605922 118606123 + 0 NA intron (ENSMUSG00000032849.14, intron 12 of 29) protein_coding-intron (ENSMUSG00000032849.14, intron 13 of 30) -13550 ENSMUSG00000098433.1 ENSMUSG00000098433 ENSMUST00000184391 Mir6391 miRNA Interval_142021 chr6 136584367 136584912 + 0 NA intron (ENSMUSG00000030213.12, intron 8 of 8) protein_coding-intron (ENSMUSG00000030213.12, intron 8 of 14) -35993 ENSMUSG00000107760.1 ENSMUSG00000107760 ENSMUST00000204462 Gm44401 TEC Interval_16423 chr10 62819183 62819578 + 0 NA intron (ENSMUSG00000047146.17, intron 8 of 12) protein_coding-intron (ENSMUSG00000047146.17, intron 7 of 10) -36193 ENSMUSG00000112806.1 ENSMUSG00000112806 ENSMUST00000218355 Gm48146 TEC Interval_153599 chr8 3630653 3631747 + 0 NA promoter-TSS (ENSMUSG00000004626.14) protein_coding-promoter-TSS (ENSMUSG00000004626.14) 35 ENSMUSG00000004626.14 ENSMUSG00000004626 ENSMUST00000162832 Stxbp2 protein_coding Interval_128420 chr5 113236178 113236387 + 0 NA intron (ENSMUSG00000066964.2, intron 4 of 4) protein_coding-intron (ENSMUSG00000066964.2, intron 4 of 4) 9373 ENSMUSG00000066964.2 ENSMUSG00000066964 ENSMUST00000086615 Tmem211 protein_coding Interval_95327 chr2 106596258 106597167 + 0 NA Intergenic Intergenic -15872 ENSMUSG00000087225.1 ENSMUSG00000087225 ENSMUST00000156718 Gm14014 lincRNA Interval_80862 chr18 49559093 49559841 + 0 NA Intergenic Intergenic 22382 ENSMUSG00000088904.1 ENSMUSG00000088904 ENSMUST00000158279 Gm25440 snRNA Interval_6619 chr1 118348073 118348502 + 0 NA Intergenic Intergenic -9025 ENSMUSG00000099936.1 ENSMUSG00000099936 ENSMUST00000190194 Gm28867 lincRNA Interval_58592 chr15 36446043 36446318 + 0 NA Intergenic Intergenic -9489 ENSMUSG00000115395.1 ENSMUSG00000115395 ENSMUST00000227487 Gm49224 lincRNA Interval_74813 chr17 56684904 56685279 + 0 NA intron (ENSMUSG00000002372.9, intron 1 of 5) protein_coding-intron (ENSMUSG00000002372.9, intron 1 of 15) 11707 ENSMUSG00000002372.9 ENSMUSG00000002372 ENSMUST00000232922 Ranbp3 protein_coding Interval_123716 chr5 34761056 34762612 + 0 NA promoter-TSS (ENSMUSG00000029104.15) protein_coding-promoter-TSS (ENSMUSG00000029104.15) -28862 ENSMUSG00000080556.1 ENSMUSG00000080556 ENSMUST00000116906 Mir467g miRNA Interval_47190 chr13 77569178 77569911 + 0 NA intron (ENSMUSG00000071252.6, intron 19 of 19) protein_coding-intron (ENSMUSG00000071252.6, intron 19 of 19) -15171 ENSMUSG00000114778.1 ENSMUSG00000114778 ENSMUST00000223622 Gm9634 processed_pseudogene Interval_30639 chr11 95600114 95601158 + 0 NA Intergenic Intergenic -12901 ENSMUSG00000000120.6 ENSMUSG00000000120 ENSMUST00000000122 Ngfr protein_coding Interval_49706 chr13 114130042 114130301 + 0 NA exon (ENSMUSG00000114213.1, exon 8 of 14) antisense-exon (ENSMUSG00000114213.1, exon 8 of 14) -9755 ENSMUSG00000114696.1 ENSMUSG00000114696 ENSMUST00000223997 Gm47479 TEC Interval_88287 chr2 3397075 3397261 + 0 NA promoter-TSS (ENSMUSG00000026645.11) protein_coding-promoter-TSS (ENSMUSG00000026645.11) 42 ENSMUSG00000026645.11 ENSMUSG00000026645 ENSMUST00000115087 Olah protein_coding Interval_134579 chr6 29717686 29719497 + 0 NA TTS (ENSMUSG00000001763.14) protein_coding-TTS (ENSMUSG00000001763.14) 10563 ENSMUSG00000001763.14 ENSMUSG00000001763 ENSMUST00000137925 Tspan33 protein_coding Interval_86409 chr19 40290036 40290274 + 0 NA Intergenic Intergenic -7816 ENSMUSG00000114796.1 ENSMUSG00000114796 ENSMUST00000225358 A930028N01Rik antisense Interval_56820 chr14 122267669 122267946 + 0 NA intron (ENSMUSG00000025545.10, intron 1 of 7) protein_coding-intron (ENSMUSG00000025545.10, intron 1 of 7) 9766 ENSMUSG00000025545.10 ENSMUSG00000025545 ENSMUST00000226136 Clybl protein_coding Interval_42240 chr13 10671748 10671948 + 0 NA intron (ENSMUSG00000097009.2, intron 5 of 10) antisense-intron (ENSMUSG00000097009.2, intron 1 of 7) -28313 ENSMUSG00000114134.1 ENSMUSG00000114134 ENSMUST00000221855 Gm47408 lincRNA Interval_113429 chr4 54957621 54957855 + 0 NA intron (ENSMUSG00000060206.11, intron 1 of 12) protein_coding-intron (ENSMUSG00000060206.11, intron 1 of 12) 12690 ENSMUSG00000060206.11 ENSMUSG00000060206 ENSMUST00000079605 Zfp462 protein_coding Interval_86622 chr19 42119948 42120589 + 0 NA exon (ENSMUSG00000025178.9, exon 9 of 9) protein_coding-exon (ENSMUSG00000025178.9, exon 9 of 9) 5590 ENSMUSG00000025178.9 ENSMUSG00000025178 ENSMUST00000238085 Pi4k2a protein_coding Interval_117152 chr4 120095369 120096212 + 0 NA exon (ENSMUSG00000028634.17, exon 4 of 9) protein_coding-exon (ENSMUSG00000028634.17, exon 4 of 9) 30794 ENSMUSG00000115115.1 ENSMUSG00000115115 ENSMUST00000226560 AL607142.1 protein_coding Interval_117863 chr4 126713403 126714055 + 0 NA Intergenic Intergenic 22511 ENSMUSG00000042477.7 ENSMUSG00000042477 ENSMUST00000048194 Tfap2e protein_coding Interval_98002 chr2 146548861 146549737 + 0 NA Intergenic Intergenic 6368 ENSMUSG00000085796.1 ENSMUSG00000085796 ENSMUST00000147212 4933406D12Rik lincRNA Interval_79756 chr18 34931297 34932693 + 0 NA promoter-TSS (ENSMUSG00000024360.8) protein_coding-promoter-TSS (ENSMUSG00000024360.8) 12 ENSMUSG00000024360.8 ENSMUSG00000024360 ENSMUST00000025218 Etf1 protein_coding Interval_22269 chr11 8448931 8449873 + 0 NA intron (ENSMUSG00000020422.14, intron 23 of 30) protein_coding-intron (ENSMUSG00000020422.14, intron 23 of 30) -65549 ENSMUSG00000083553.1 ENSMUSG00000083553 ENSMUST00000117240 Gm11989 processed_pseudogene Interval_101000 chr2 174094968 174095952 + 0 NA intron (ENSMUSG00000027522.15, intron 7 of 7) protein_coding-intron (ENSMUSG00000027522.15, intron 8 of 8) -15720 ENSMUSG00000039263.16 ENSMUSG00000039263 ENSMUST00000136449 Npepl1 protein_coding Interval_135294 chr6 38109442 38110029 + 0 NA promoter-TSS (ENSMUSG00000038600.12) protein_coding-promoter-TSS (ENSMUSG00000038600.12) 480 ENSMUSG00000029829.4 ENSMUSG00000029829 ENSMUST00000031851 Tmem213 protein_coding Interval_31381 chr11 100348154 100349865 + 0 NA TTS (ENSMUSG00000092509.1) processed_transcript-TTS (ENSMUSG00000092509.1) 1880 ENSMUSG00000092509.1 ENSMUSG00000092509 ENSMUST00000173304 Gm20394 processed_transcript Interval_102406 chr3 24238697 24239775 + 0 NA intron (ENSMUSG00000102758.3, intron 5 of 13) protein_coding-intron (ENSMUSG00000102758.3, intron 5 of 13) -93832 ENSMUSG00000057036.7 ENSMUSG00000057036 ENSMUST00000077389 Gm7536 processed_pseudogene Interval_82147 chr18 68045117 68046493 + 0 NA intron (ENSMUSG00000024544.9, intron 1 of 5) protein_coding-intron (ENSMUSG00000024544.9, intron 1 of 5) 72569 ENSMUSG00000117891.1 ENSMUSG00000117891 ENSMUST00000236198 Gm41764 antisense Interval_36938 chr12 55473386 55474710 + 0 NA Intergenic Intergenic 17762 ENSMUSG00000021025.8 ENSMUSG00000021025 ENSMUST00000219869 Nfkbia protein_coding Interval_167139 chr9 65600648 65601440 + 0 NA Intergenic Intergenic 13839 ENSMUSG00000041064.14 ENSMUSG00000041064 ENSMUST00000141046 Pif1 protein_coding Interval_57949 chr15 25695671 25696155 + 0 NA intron (ENSMUSG00000022272.17, intron 1 of 4) protein_coding-intron (ENSMUSG00000022272.17, intron 2 of 40) 14115 ENSMUSG00000089639.1 ENSMUSG00000089639 ENSMUST00000161524 Gm2862 processed_pseudogene Interval_152669 chr7 136033190 136034498 + 0 NA Intergenic Intergenic 81046 ENSMUSG00000098031.1 ENSMUSG00000098031 ENSMUST00000183000 Gm9341 processed_pseudogene Interval_136277 chr6 52471819 52472373 + 0 NA Intergenic Intergenic -20355 ENSMUSG00000107895.1 ENSMUSG00000107895 ENSMUST00000203771 1700094M24Rik lincRNA Interval_125777 chr5 74067580 74069093 + 0 NA promoter-TSS (ENSMUSG00000054814.14) protein_coding-promoter-TSS (ENSMUSG00000054814.14) 8298 ENSMUSG00000106973.1 ENSMUSG00000106973 ENSMUST00000201934 Gm43415 TEC Interval_87365 chr19 47954532 47955324 + 0 NA intron (ENSMUSG00000046585.9, intron 6 of 17) protein_coding-intron (ENSMUSG00000046585.9, intron 6 of 17) 17253 ENSMUSG00000046585.9 ENSMUSG00000046585 ENSMUST00000066308 Cfap58 protein_coding Interval_102881 chr3 32508813 32509189 + 0 NA Intergenic Intergenic -1895 ENSMUSG00000027667.13 ENSMUSG00000027667 ENSMUST00000193290 Zfp639 protein_coding Interval_116968 chr4 118527231 118528255 + 0 NA intron (ENSMUSG00000028536.12, intron 1 of 2) protein_coding-intron (ENSMUSG00000028536.12, intron 1 of 2) 744 ENSMUSG00000028536.12 ENSMUSG00000028536 ENSMUST00000030261 2610528J11Rik protein_coding Interval_129460 chr5 120331554 120332369 + 0 NA Intergenic Intergenic 14007 ENSMUSG00000107141.1 ENSMUSG00000107141 ENSMUST00000200789 Gm42654 lincRNA Interval_36941 chr12 55495201 55496591 + 0 NA Intergenic Intergenic -1825 ENSMUSG00000112348.1 ENSMUSG00000112348 ENSMUST00000218356 Gm36634 processed_transcript Interval_171556 chr9 119191958 119192808 + 0 NA TTS (ENSMUSG00000074028.4) protein_coding-TTS (ENSMUSG00000074028.4) 16715 ENSMUSG00000074028.4 ENSMUSG00000074028 ENSMUST00000084797 Slc22a13 protein_coding Interval_172483 chrX 21002395 21002788 + 0 NA Intergenic Intergenic 40477 ENSMUSG00000086877.7 ENSMUSG00000086877 ENSMUST00000136447 A230072C01Rik processed_transcript Interval_111254 chr4 16064911 16065403 + 0 NA Intergenic Intergenic -51361 ENSMUSG00000041153.9 ENSMUSG00000041153 ENSMUST00000124770 Osgin2 protein_coding Interval_92441 chr2 59742443 59742714 + 0 NA promoter-TSS (ENSMUSG00000035168.16) protein_coding-promoter-TSS (ENSMUSG00000035168.16) -63490 ENSMUSG00000035168.16 ENSMUSG00000035168 ENSMUST00000147650 Tanc1 protein_coding Interval_43293 chr13 28810843 28812504 + 0 NA intron (ENSMUSG00000085936.7, intron 2 of 7) processed_transcript-intron (ENSMUSG00000085936.7, intron 1 of 5) -15450 ENSMUSG00000092093.1 ENSMUSG00000092093 ENSMUST00000171026 Gm17528 pseudogene Interval_104621 chr3 68897086 68897435 + 0 NA intron (ENSMUSG00000027778.15, intron 19 of 19) protein_coding-intron (ENSMUSG00000027778.15, intron 18 of 18) 3189 ENSMUSG00000093384.1 ENSMUSG00000093384 ENSMUST00000176033 Gm20689 processed_pseudogene Interval_166344 chr9 58467395 58467631 + 0 NA intron (ENSMUSG00000097651.2, intron 2 of 2) lincRNA-intron (ENSMUSG00000097651.2, intron 2 of 2) 12391 ENSMUSG00000097651.2 ENSMUSG00000097651 ENSMUST00000181967 4930461G14Rik lincRNA Interval_30057 chr11 88931437 88932539 + 0 NA intron (ENSMUSG00000000278.10, intron 10 of 12) protein_coding-intron (ENSMUSG00000000278.10, intron 10 of 12) 23477 ENSMUSG00000000278.10 ENSMUSG00000000278 ENSMUST00000000287 Scpep1 protein_coding Interval_35129 chr12 17469238 17470487 + 0 NA Intergenic Intergenic 33244 ENSMUSG00000113246.1 ENSMUSG00000113246 ENSMUST00000220527 Gm36752 lincRNA Interval_174524 chrX 156064027 156064952 + 0 NA intron (ENSMUSG00000055109.5, intron 3 of 6) protein_coding-intron (ENSMUSG00000055109.5, intron 3 of 6) 141572 ENSMUSG00000081386.1 ENSMUSG00000081386 ENSMUST00000120553 Gm15160 processed_pseudogene Interval_160038 chr8 105960989 105961884 + 0 NA intron (ENSMUSG00000017765.17, intron 1 of 1) protein_coding-intron (ENSMUSG00000017765.17, intron 1 of 23) 4638 ENSMUSG00000017765.17 ENSMUSG00000017765 ENSMUST00000143381 Slc12a4 protein_coding Interval_153697 chr8 4707555 4709158 + 0 NA Intergenic Intergenic -4851 ENSMUSG00000109055.1 ENSMUSG00000109055 ENSMUST00000207279 Gm2676 processed_pseudogene Interval_89718 chr2 24969094 24969623 + 0 NA TTS (ENSMUSG00000026975.10) protein_coding-TTS (ENSMUSG00000026975.10) 5631 ENSMUSG00000036850.4 ENSMUSG00000036850 ENSMUST00000194392 Mrpl41 protein_coding Interval_121878 chr5 9086229 9086571 + 0 NA Intergenic Intergenic 51620 ENSMUSG00000114430.1 ENSMUSG00000114430 ENSMUST00000224996 Gm40264 lincRNA Interval_93521 chr2 73766781 73767019 + 0 NA intron (ENSMUSG00000056486.18, intron 1 of 9) protein_coding-intron (ENSMUSG00000056486.18, intron 1 of 12) -42262 ENSMUSG00000081062.1 ENSMUSG00000081062 ENSMUST00000118445 Gm13640 processed_pseudogene Interval_162032 chr8 124573369 124574159 + 0 NA Intergenic Intergenic -4058 ENSMUSG00000031980.10 ENSMUSG00000031980 ENSMUST00000063278 Agt protein_coding Interval_3385 chr1 57779667 57781053 + 0 NA intron (ENSMUSG00000038305.15, intron 1 of 1) protein_coding-intron (ENSMUSG00000038305.15, intron 1 of 11) 6198 ENSMUSG00000038305.15 ENSMUSG00000038305 ENSMUST00000164353 Spats2l protein_coding Interval_159259 chr8 92402634 92403155 + 0 NA Intergenic Intergenic 45269 ENSMUSG00000031737.11 ENSMUSG00000031737 ENSMUST00000034184 Irx5 protein_coding Interval_135412 chr6 39205154 39207448 + 0 NA promoter-TSS (ENSMUSG00000115026.1) bidirectional_promoter_lncRNA-promoter-TSS (ENSMUSG00000115026.1) -767 ENSMUSG00000115026.1 ENSMUSG00000115026 ENSMUST00000227758 Gm49041 bidirectional_promoter_lncRNA Interval_133134 chr5 150080333 150081185 + 0 NA intron (ENSMUSG00000053368.13, intron 1 of 1) protein_coding-intron (ENSMUSG00000053368.13, intron 17 of 17) 2036 ENSMUSG00000107384.1 ENSMUSG00000107384 ENSMUST00000202037 Gm42557 antisense Interval_115975 chr4 106713503 106714469 + 0 NA intron (ENSMUSG00000047502.14, intron 3 of 6) protein_coding-intron (ENSMUSG00000047502.14, intron 4 of 23) 16939 ENSMUSG00000047502.14 ENSMUSG00000047502 ENSMUST00000148281 Mroh7 protein_coding Interval_121942 chr5 10763380 10763915 + 0 NA Intergenic Intergenic -20472 ENSMUSG00000105657.1 ENSMUSG00000105657 ENSMUST00000196019 Gm42833 TEC Interval_3626 chr1 60078435 60078628 + 0 NA intron (ENSMUSG00000026019.15, intron 13 of 13) protein_coding-intron (ENSMUSG00000026019.15, intron 12 of 12) 7231 ENSMUSG00000026019.15 ENSMUSG00000026019 ENSMUST00000133767 Wdr12 protein_coding Interval_10449 chr1 170950352 170951682 + 0 NA Intergenic Intergenic 15246 ENSMUSG00000104386.1 ENSMUSG00000104386 ENSMUST00000194254 Gm37030 processed_pseudogene Interval_172900 chrX 53005690 53006249 + 0 NA intron (ENSMUSG00000025630.8, intron 3 of 8) protein_coding-intron (ENSMUSG00000025630.8, intron 3 of 8) 17832 ENSMUSG00000025630.8 ENSMUSG00000025630 ENSMUST00000026723 Hprt protein_coding Interval_81576 chr18 61780991 61781307 + 0 NA intron (ENSMUSG00000033032.15, intron 1 of 15) protein_coding-intron (ENSMUSG00000033032.15, intron 1 of 18) 5462 ENSMUSG00000033032.15 ENSMUSG00000033032 ENSMUST00000147278 Afap1l1 protein_coding Interval_31452 chr11 100761542 100762311 + 0 NA exon (ENSMUSG00000045471.4, exon 2 of 2) protein_coding-exon (ENSMUSG00000045471.4, exon 2 of 2) 1002 ENSMUSG00000045471.4 ENSMUSG00000045471 ENSMUST00000055083 Hcrt protein_coding Interval_115937 chr4 106426092 106426762 + 0 NA intron (ENSMUSG00000028514.15, intron 60 of 67) protein_coding-intron (ENSMUSG00000028514.15, intron 60 of 67) 37902 ENSMUSG00000044254.6 ENSMUSG00000044254 ENSMUST00000049507 Pcsk9 protein_coding Interval_125057 chr5 64159239 64161563 + 0 NA exon (ENSMUSG00000029174.18, exon 1 of 22) protein_coding-exon (ENSMUSG00000029174.18, exon 1 of 22) 4096 ENSMUSG00000029174.18 ENSMUSG00000029174 ENSMUST00000140960 Tbc1d1 protein_coding Interval_153252 chr7 142927388 142927897 + 0 NA intron (ENSMUSG00000000214.11, intron 1 of 3) protein_coding-intron (ENSMUSG00000000214.11, intron 1 of 11) 3478 ENSMUSG00000000214.11 ENSMUSG00000000214 ENSMUST00000140344 Th protein_coding Interval_131011 chr5 134539874 134540274 + 0 NA intron (ENSMUSG00000063146.11, intron 1 of 16) protein_coding-intron (ENSMUSG00000063146.11, intron 1 of 15) -11983 ENSMUSG00000107090.1 ENSMUSG00000107090 ENSMUST00000200729 Gm42884 antisense Interval_52879 chr14 51638478 51638899 + 0 NA intron (ENSMUSG00000079244.3, intron 1 of 4) protein_coding-intron (ENSMUSG00000079244.3, intron 1 of 4) -3059 ENSMUSG00000091296.2 ENSMUSG00000091296 ENSMUST00000226595 Gm4181 protein_coding Interval_24738 chr11 36484149 36485289 + 0 NA intron (ENSMUSG00000049336.16, intron 2 of 28) protein_coding-intron (ENSMUSG00000049336.16, intron 2 of 28) 206678 ENSMUSG00000086375.1 ENSMUSG00000086375 ENSMUST00000123278 Gm12127 antisense Interval_63149 chr15 99392345 99393716 + 0 NA promoter-TSS (ENSMUSG00000023010.15) protein_coding-promoter-TSS (ENSMUSG00000023010.15) -14237 ENSMUSG00000023010.15 ENSMUSG00000023010 ENSMUST00000231173 Tmbim6 protein_coding Interval_149631 chr7 100187594 100187922 + 0 NA intron (ENSMUSG00000109186.1, intron 1 of 1) antisense-intron (ENSMUSG00000109186.1, intron 1 of 1) 10590 ENSMUSG00000109435.1 ENSMUSG00000109435 ENSMUST00000207698 Gm7067 processed_pseudogene Interval_114342 chr4 73839513 73840031 + 0 NA Intergenic Intergenic -24625 ENSMUSG00000083530.1 ENSMUSG00000083530 ENSMUST00000120844 Gm13867 unprocessed_pseudogene Interval_122277 chr5 20902088 20903463 + 0 NA intron (ENSMUSG00000039968.9, intron 5 of 6) protein_coding-intron (ENSMUSG00000039968.9, intron 5 of 7) 19624 ENSMUSG00000039968.9 ENSMUSG00000039968 ENSMUST00000197089 Rsbn1l protein_coding Interval_153908 chr8 10954874 10955090 + 0 NA Intergenic Intergenic -7092 ENSMUSG00000109084.1 ENSMUSG00000109084 ENSMUST00000208843 Gm44955 lincRNA Interval_40333 chr12 103853565 103853939 + 0 NA exon (ENSMUSG00000066366.14, exon 6 of 6) protein_coding-exon (ENSMUSG00000066366.14, exon 6 of 6) 9810 ENSMUSG00000066366.14 ENSMUSG00000066366 ENSMUST00000124717 Serpina1a protein_coding Interval_57177 chr15 7167493 7168483 + 0 NA intron (ENSMUSG00000054263.12, intron 6 of 15) protein_coding-intron (ENSMUSG00000054263.12, intron 6 of 19) 77374 ENSMUSG00000054263.12 ENSMUSG00000054263 ENSMUST00000171588 Lifr protein_coding Interval_53193 chr14 55032633 55033301 + 0 NA Intergenic Intergenic -8805 ENSMUSG00000072492.5 ENSMUSG00000072492 ENSMUST00000153034 Gm10364 transcribed_processed_pseudogene Interval_13095 chr10 11306981 11307240 + 0 NA Intergenic Intergenic 23305 ENSMUSG00000111983.1 ENSMUSG00000111983 ENSMUST00000219929 Gm48666 processed_pseudogene Interval_139174 chr6 96849857 96850115 + 0 NA intron (ENSMUSG00000046500.8, intron 4 of 5) protein_coding-intron (ENSMUSG00000046500.8, intron 4 of 5) 210407 ENSMUSG00000046500.8 ENSMUSG00000046500 ENSMUST00000203930 Tafa4 protein_coding Interval_15234 chr10 43559044 43559696 + 0 NA Intergenic Intergenic -18404 ENSMUSG00000019797.11 ENSMUSG00000019797 ENSMUST00000214198 Mtres1 protein_coding Interval_53560 chr14 59231938 59232900 + 0 NA intron (ENSMUSG00000035469.17, intron 12 of 12) protein_coding-intron (ENSMUSG00000035469.17, intron 12 of 12) 14814 ENSMUSG00000035469.17 ENSMUSG00000035469 ENSMUST00000147280 Rcbtb1 protein_coding Interval_151625 chr7 125461525 125462902 + 0 NA TTS (ENSMUSG00000030752.8) protein_coding-TTS (ENSMUSG00000030752.8) 16346 ENSMUSG00000030750.13 ENSMUSG00000030750 ENSMUST00000149289 Nsmce1 protein_coding Interval_7687 chr1 133050115 133050598 + 0 NA intron (ENSMUSG00000101102.1, intron 3 of 3) protein_coding-intron (ENSMUSG00000026447.17, intron 1 of 32) 18049 ENSMUSG00000101102.1 ENSMUSG00000101102 ENSMUST00000186515 Gm28609 antisense Interval_136696 chr6 57896802 57897231 + 0 NA Intergenic Intergenic 11012 ENSMUSG00000115091.1 ENSMUSG00000115091 ENSMUST00000228322 Vmn1r22 protein_coding Interval_110969 chr4 10955665 10955999 + 0 NA Intergenic Intergenic 9224 ENSMUSG00000081715.1 ENSMUSG00000081715 ENSMUST00000117608 Rps11-ps3 processed_pseudogene Interval_40590 chr12 105873431 105874011 + 0 NA intron (ENSMUSG00000113537.1, intron 2 of 2) lincRNA-intron (ENSMUSG00000113537.1, intron 2 of 2) -7928 ENSMUSG00000093331.1 ENSMUSG00000093331 ENSMUST00000175590 Gm22120 miRNA Interval_10019 chr1 165106126 165106412 + 0 NA Intergenic Intergenic -14341 ENSMUSG00000102408.1 ENSMUSG00000102408 ENSMUST00000195635 4930568G15Rik lincRNA Interval_163856 chr9 27164361 27166276 + 0 NA Intergenic Intergenic 37980 ENSMUSG00000110836.1 ENSMUSG00000110836 ENSMUST00000216094 Gm48801 lincRNA Interval_39646 chr12 91764728 91765774 + 0 NA intron (ENSMUSG00000020961.15, intron 1 of 6) protein_coding-intron (ENSMUSG00000020961.15, intron 1 of 6) 5919 ENSMUSG00000020961.15 ENSMUSG00000020961 ENSMUST00000166008 Ston2 protein_coding Interval_45674 chr13 56764552 56766013 + 0 NA Intergenic Intergenic -11455 ENSMUSG00000110086.1 ENSMUSG00000110086 ENSMUST00000210744 Gm45623 protein_coding Interval_140120 chr6 114430666 114430989 + 0 NA intron (ENSMUSG00000053004.9, intron 2 of 2) protein_coding-intron (ENSMUSG00000053004.9, intron 2 of 2) 27161 ENSMUSG00000053004.9 ENSMUSG00000053004 ENSMUST00000160780 Hrh1 protein_coding Interval_143132 chr7 3569972 3571263 + 0 NA Intergenic Intergenic -2586 ENSMUSG00000108758.1 ENSMUSG00000108758 ENSMUST00000205290 Gm44921 processed_pseudogene Interval_9433 chr1 157066863 157067929 + 0 NA Intergenic Intergenic -13362 ENSMUSG00000101768.1 ENSMUSG00000101768 ENSMUST00000190681 Gm28694 lincRNA Interval_75893 chr17 72813527 72814391 + 0 NA Intergenic Intergenic -23577 ENSMUSG00000039770.6 ENSMUSG00000039770 ENSMUST00000233662 Ypel5 protein_coding Interval_77177 chr17 87113388 87113736 + 0 NA intron (ENSMUSG00000037104.9, intron 1 of 1) protein_coding-intron (ENSMUSG00000037104.9, intron 1 of 2) 5871 ENSMUSG00000037104.9 ENSMUSG00000037104 ENSMUST00000234421 Socs5 protein_coding Interval_170969 chr9 113391226 113392767 + 0 NA Intergenic Intergenic -11479 ENSMUSG00000087817.1 ENSMUSG00000087817 ENSMUST00000157192 Gm22492 misc_RNA Interval_131178 chr5 135628805 135629744 + 0 NA Intergenic Intergenic -5828 ENSMUSG00000039917.10 ENSMUSG00000039917 ENSMUST00000084599 Rhbdd2 protein_coding Interval_40813 chr12 108573220 108574659 + 0 NA intron (ENSMUSG00000021262.15, intron 1 of 12) protein_coding-intron (ENSMUSG00000021262.15, intron 1 of 13) -18475 ENSMUSG00000097788.2 ENSMUSG00000097788 ENSMUST00000220796 Gm16596 antisense Interval_39881 chr12 99347139 99347366 + 0 NA exon (ENSMUSG00000033731.9, exon 2 of 4) antisense-exon (ENSMUSG00000033731.9, exon 2 of 4) 6098 ENSMUSG00000033731.9 ENSMUSG00000033731 ENSMUST00000046994 3300002A11Rik antisense Interval_22919 chr11 17379620 17379815 + 0 NA Intergenic Intergenic -81298 ENSMUSG00000082797.3 ENSMUSG00000082797 ENSMUST00000117065 Gm12015 processed_pseudogene Interval_94940 chr2 102037201 102037468 + 0 NA intron (ENSMUSG00000048058.17, intron 4 of 5) protein_coding-intron (ENSMUSG00000048058.17, intron 4 of 5) -2295 ENSMUSG00000085417.1 ENSMUSG00000085417 ENSMUST00000123891 Gm13919 antisense Interval_18485 chr10 86600445 86601301 + 0 NA promoter-TSS (ENSMUSG00000112010.1) processed_pseudogene-promoter-TSS (ENSMUSG00000112010.1) -44 ENSMUSG00000112010.1 ENSMUSG00000112010 ENSMUST00000218018 Gm48461 processed_pseudogene Interval_105345 chr3 85210014 85210747 + 0 NA intron (ENSMUSG00000102805.5, intron 3 of 9) protein_coding-intron (ENSMUSG00000102805.5, intron 3 of 9) -13933 ENSMUSG00000102703.1 ENSMUSG00000102703 ENSMUST00000191953 Gm38313 TEC Interval_155705 chr8 36277670 36278891 + 0 NA Intergenic Intergenic -28764 ENSMUSG00000039633.7 ENSMUSG00000039633 ENSMUST00000065297 Lonrf1 protein_coding Interval_125255 chr5 65685528 65685934 + 0 NA intron (ENSMUSG00000029202.12, intron 2 of 32) protein_coding-intron (ENSMUSG00000029202.12, intron 2 of 31) -3387 ENSMUSG00000107050.1 ENSMUSG00000107050 ENSMUST00000202959 C030017G13Rik TEC Interval_128004 chr5 110227318 110228309 + 0 NA Intergenic Intergenic -3191 ENSMUSG00000029501.14 ENSMUSG00000029501 ENSMUST00000196821 Ankle2 protein_coding Interval_170277 chr9 106633778 106634937 + 0 NA Intergenic Intergenic -1961 ENSMUSG00000088317.1 ENSMUSG00000088317 ENSMUST00000157692 Gm26185 misc_RNA Interval_166036 chr9 55789007 55790076 + 0 NA intron (ENSMUSG00000034007.10, intron 10 of 21) protein_coding-intron (ENSMUSG00000034007.10, intron 19 of 30) 148569 ENSMUSG00000034007.10 ENSMUSG00000034007 ENSMUST00000215323 Scaper protein_coding Interval_30771 chr11 96374477 96375436 + 0 NA Intergenic Intergenic 8698 ENSMUSG00000018973.2 ENSMUSG00000018973 ENSMUST00000123805 Hoxb1 protein_coding Interval_32502 chr11 107970522 107970718 + 0 NA intron (ENSMUSG00000050965.14, intron 3 of 6) protein_coding-intron (ENSMUSG00000050965.14, intron 13 of 16) -23402 ENSMUSG00000086078.1 ENSMUSG00000086078 ENSMUST00000137175 Gm11657 antisense Interval_136722 chr6 58584392 58585017 + 0 NA intron (ENSMUSG00000029802.13, intron 1 of 2) protein_coding-intron (ENSMUSG00000029802.13, intron 1 of 4) -55878 ENSMUSG00000029802.13 ENSMUSG00000029802 ENSMUST00000134426 Abcg2 protein_coding Interval_121074 chr4 152624932 152626079 + 0 NA Intergenic Intergenic 52498 ENSMUSG00000083078.1 ENSMUSG00000083078 ENSMUST00000118685 Gm13172 processed_pseudogene Interval_90150 chr2 28564123 28565203 + 0 NA intron (ENSMUSG00000087667.8, intron 1 of 2) antisense-intron (ENSMUSG00000087667.8, intron 1 of 2) -1260 ENSMUSG00000026818.5 ENSMUSG00000026818 ENSMUST00000124756 Cel protein_coding Interval_59427 chr15 53083116 53083383 + 0 NA intron (ENSMUSG00000061731.9, intron 6 of 9) protein_coding-intron (ENSMUSG00000061731.9, intron 7 of 10) 24619 ENSMUSG00000061731.9 ENSMUSG00000061731 ENSMUST00000140798 Ext1 protein_coding Interval_95828 chr2 116979807 116980879 + 0 NA Intergenic Intergenic -3915 ENSMUSG00000099470.1 ENSMUSG00000099470 ENSMUST00000188763 Gm29340 lincRNA Interval_23079 chr11 19768272 19768616 + 0 NA Intergenic Intergenic -15208 ENSMUSG00000081820.1 ENSMUSG00000081820 ENSMUST00000120073 Gm12029 processed_pseudogene Interval_73470 chr17 37704901 37705235 + 0 NA Intergenic Intergenic 8504 ENSMUSG00000059964.9 ENSMUSG00000059964 ENSMUST00000080483 Olfr119 protein_coding Interval_136805 chr6 60555790 60556094 + 0 NA Intergenic Intergenic -30836 ENSMUSG00000108003.1 ENSMUSG00000108003 ENSMUST00000204603 Gm35386 lincRNA Interval_47974 chr13 94797793 94798080 + 0 NA intron (ENSMUSG00000042043.6, intron 1 of 3) protein_coding-intron (ENSMUSG00000042043.6, intron 1 of 3) -19798 ENSMUSG00000042043.6 ENSMUSG00000042043 ENSMUST00000220561 Tbca protein_coding Interval_1208 chr1 17107442 17107638 + 0 NA Intergenic Intergenic -17207 ENSMUSG00000100110.1 ENSMUSG00000100110 ENSMUST00000188872 Gm28783 lincRNA Interval_101815 chr3 9689562 9690075 + 0 NA exon (ENSMUSG00000027508.15, exon 9 of 9) protein_coding-exon (ENSMUSG00000027508.15, exon 9 of 9) 33298 ENSMUSG00000103876.1 ENSMUSG00000103876 ENSMUST00000195844 Gm17806 processed_pseudogene Interval_1187 chr1 16710868 16711198 + 0 NA Intergenic Intergenic 22982 ENSMUSG00000025779.10 ENSMUSG00000025779 ENSMUST00000190366 Ly96 protein_coding Interval_48453 chr13 99123673 99124015 + 0 NA Intergenic Intergenic 23083 ENSMUSG00000097848.2 ENSMUSG00000097848 ENSMUST00000224929 Gm807 lincRNA Interval_33904 chr11 119292478 119294704 + 0 NA promoter-TSS (ENSMUSG00000025580.15) protein_coding-promoter-TSS (ENSMUSG00000025580.15) -4515 ENSMUSG00000025580.15 ENSMUSG00000025580 ENSMUST00000134743 Eif4a3 protein_coding Interval_39987 chr12 100276848 100277059 + 0 NA intron (ENSMUSG00000113679.1, intron 1 of 3) processed_transcript-intron (ENSMUSG00000113679.1, intron 1 of 3) -13303 ENSMUSG00000113679.1 ENSMUSG00000113679 ENSMUST00000220721 Gm10432 processed_transcript Interval_130890 chr5 133600509 133600736 + 0 NA Intergenic Intergenic -2216 ENSMUSG00000105227.1 ENSMUSG00000105227 ENSMUST00000196125 Gm36667 lincRNA Interval_90800 chr2 32672366 32672578 + 0 NA promoter-TSS (ENSMUSG00000026814.16) protein_coding-promoter-TSS (ENSMUSG00000026814.16) -371 ENSMUSG00000026814.16 ENSMUSG00000026814 ENSMUST00000156306 Eng protein_coding Interval_41531 chr12 116036861 116038083 + 0 NA Intergenic Intergenic -10304 ENSMUSG00000042063.11 ENSMUSG00000042063 ENSMUST00000182883 Zfp386 protein_coding Interval_41252 chr12 112164231 112165477 + 0 NA intron (ENSMUSG00000021294.7, intron 4 of 15) protein_coding-intron (ENSMUSG00000021294.7, intron 4 of 15) -14300 ENSMUSG00000021294.7 ENSMUSG00000021294 ENSMUST00000183816 Kif26a protein_coding Interval_77269 chr17 87689272 87689541 + 0 NA intron (ENSMUSG00000024151.13, intron 7 of 9) protein_coding-intron (ENSMUSG00000024151.13, intron 7 of 15) -7135 ENSMUSG00000024151.13 ENSMUSG00000024151 ENSMUST00000174703 Msh2 protein_coding Interval_174310 chrX 144314719 144314953 + 0 NA Intergenic Intergenic -2968 ENSMUSG00000041718.16 ENSMUSG00000041718 ENSMUST00000149811 Alg13 protein_coding Interval_79792 chr18 35131543 35131788 + 0 NA intron (ENSMUSG00000037815.7, intron 1 of 3) protein_coding-intron (ENSMUSG00000037815.7, intron 1 of 17) -44042 ENSMUSG00000117727.1 ENSMUSG00000117727 ENSMUST00000238134 Gm3587 lincRNA Interval_19976 chr10 111631644 111631867 + 0 NA Intergenic Intergenic 18057 ENSMUSG00000112357.1 ENSMUSG00000112357 ENSMUST00000217989 Gm47864 processed_pseudogene Interval_163027 chr9 14641106 14643590 + 0 NA intron (ENSMUSG00000013076.17, intron 1 of 13) protein_coding-intron (ENSMUSG00000013076.17, intron 1 of 13) -2193 ENSMUSG00000111198.1 ENSMUSG00000111198 ENSMUST00000214353 Gm34263 lincRNA Interval_48120 chr13 96387862 96388747 + 0 NA promoter-TSS (ENSMUSG00000021671.9) protein_coding-promoter-TSS (ENSMUSG00000021671.9) 11374 ENSMUSG00000113743.1 ENSMUSG00000113743 ENSMUST00000221090 Gm8712 processed_pseudogene Interval_6733 chr1 119052203 119052412 + 0 NA intron (ENSMUSG00000048402.14, intron 1 of 6) protein_coding-intron (ENSMUSG00000048402.14, intron 1 of 13) 1032 ENSMUSG00000048402.14 ENSMUSG00000048402 ENSMUST00000159678 Gli2 protein_coding Interval_101043 chr2 174472454 174473621 + 0 NA promoter-TSS (ENSMUSG00000016257.15) protein_coding-promoter-TSS (ENSMUSG00000016257.15) -146 ENSMUSG00000016257.15 ENSMUSG00000016257 ENSMUST00000141100 Prelid3b protein_coding Interval_98600 chr2 153514531 153515004 + 0 NA intron (ENSMUSG00000061411.12, intron 1 of 10) protein_coding-intron (ENSMUSG00000061411.12, intron 1 of 10) 21977 ENSMUSG00000079001.1 ENSMUSG00000079001 ENSMUST00000109783 4930404H24Rik protein_coding Interval_62811 chr15 97150975 97151551 + 0 NA Intergenic Intergenic 15981 ENSMUSG00000116295.1 ENSMUSG00000116295 ENSMUST00000229491 Gm32885 lincRNA Interval_110868 chr4 9158564 9159203 + 0 NA Intergenic Intergenic -51120 ENSMUSG00000075958.1 ENSMUSG00000075958 ENSMUST00000082782 Gm23423 snRNA Interval_79861 chr18 35620161 35620330 + 0 NA intron (ENSMUSG00000024354.13, intron 3 of 3) protein_coding-intron (ENSMUSG00000024354.13, intron 13 of 14) 6951 ENSMUSG00000024354.13 ENSMUSG00000024354 ENSMUST00000236196 Slc23a1 protein_coding Interval_40058 chr12 100916516 100916901 + 0 NA exon (ENSMUSG00000021182.16, exon 29 of 30) protein_coding-exon (ENSMUSG00000021182.16, exon 29 of 30) 12357 ENSMUSG00000021182.16 ENSMUSG00000021182 ENSMUST00000223097 Ccdc88c protein_coding Interval_834 chr1 12240316 12240593 + 0 NA Intergenic Intergenic 119494 ENSMUSG00000101610.1 ENSMUSG00000101610 ENSMUST00000187748 Gm7560 processed_pseudogene Interval_131804 chr5 139984664 139985899 + 0 NA Intergenic Intergenic -21490 ENSMUSG00000106090.1 ENSMUSG00000106090 ENSMUST00000196164 Gm43704 processed_pseudogene Interval_128323 chr5 112551716 112553206 + 0 NA intron (ENSMUSG00000058153.15, intron 1 of 14) protein_coding-intron (ENSMUSG00000058153.15, intron 1 of 16) 24407 ENSMUSG00000058153.15 ENSMUSG00000058153 ENSMUST00000212758 Sez6l protein_coding Interval_104854 chr3 75981084 75981498 + 0 NA intron (ENSMUSG00000104448.1, intron 1 of 3) lincRNA-intron (ENSMUSG00000104448.1, intron 1 of 3) -24360 ENSMUSG00000034109.15 ENSMUSG00000034109 ENSMUST00000192433 Golim4 protein_coding Interval_174138 chrX 136138670 136140080 + 0 NA intron (ENSMUSG00000047844.3, intron 1 of 2) protein_coding-intron (ENSMUSG00000047844.3, intron 1 of 2) 379 ENSMUSG00000047844.3 ENSMUSG00000047844 ENSMUST00000116527 Bex4 protein_coding Interval_74937 chr17 57556335 57556857 + 0 NA TTS (ENSMUSG00000117223.1) unprocessed_pseudogene-TTS (ENSMUSG00000117223.1) 1369 ENSMUSG00000117223.1 ENSMUSG00000117223 ENSMUST00000233817 Gm49842 unprocessed_pseudogene Interval_128042 chr5 110454393 110455446 + 0 NA Intergenic Intergenic -6416 ENSMUSG00000043323.17 ENSMUSG00000043323 ENSMUST00000200293 Fbrsl1 protein_coding Interval_86350 chr19 38941050 38941642 + 0 NA TTS (ENSMUSG00000025001.11) protein_coding-TTS (ENSMUSG00000025001.11) 9956 ENSMUSG00000025001.11 ENSMUSG00000025001 ENSMUST00000127968 Hells protein_coding Interval_123578 chr5 33593753 33594061 + 0 NA Intergenic Intergenic 35155 ENSMUSG00000037339.17 ENSMUSG00000037339 ENSMUST00000140043 Fam53a protein_coding Interval_6535 chr1 114939760 114939978 + 0 NA Intergenic Intergenic 279894 ENSMUSG00000101687.1 ENSMUSG00000101687 ENSMUST00000185902 Gm4854 processed_pseudogene Interval_15631 chr10 52488545 52489260 + 0 NA Intergenic Intergenic 25875 ENSMUSG00000112464.1 ENSMUSG00000112464 ENSMUST00000217713 Gm47609 processed_pseudogene Interval_49507 chr13 112503995 112504242 + 0 NA TTS (ENSMUSG00000021756.12) protein_coding-TTS (ENSMUSG00000021756.12) 29072 ENSMUSG00000021756.12 ENSMUSG00000021756 ENSMUST00000184949 Il6st protein_coding Interval_167126 chr9 65525563 65526089 + 0 NA intron (ENSMUSG00000111818.1, intron 1 of 1) processed_transcript-intron (ENSMUSG00000111818.1, intron 1 of 1) 3980 ENSMUSG00000111818.1 ENSMUSG00000111818 ENSMUST00000216282 Gm17749 processed_transcript Interval_124309 chr5 43818662 43819344 + 0 NA exon (ENSMUSG00000029082.17, exon 1 of 9) protein_coding-exon (ENSMUSG00000029082.17, exon 1 of 9) 118 ENSMUSG00000029082.17 ENSMUSG00000029082 ENSMUST00000125838 Bst1 protein_coding Interval_41772 chr12 118926470 118927355 + 0 NA intron (ENSMUSG00000072791.11, intron 13 of 27) protein_coding-intron (ENSMUSG00000072791.11, intron 13 of 27) -36153 ENSMUSG00000072791.11 ENSMUSG00000072791 ENSMUST00000100982 Abcb5 protein_coding Interval_60210 chr15 68181431 68181833 + 0 NA intron (ENSMUSG00000022335.17, intron 5 of 13) protein_coding-intron (ENSMUSG00000022335.17, intron 4 of 4) 77155 ENSMUSG00000022335.17 ENSMUSG00000022335 ENSMUST00000161139 Zfat protein_coding Interval_147181 chr7 64166325 64167317 + 0 NA intron (ENSMUSG00000030523.18, intron 1 of 7) protein_coding-intron (ENSMUSG00000030523.18, intron 1 of 26) 35703 ENSMUSG00000108645.1 ENSMUSG00000108645 ENSMUST00000206473 Gm44722 TEC Interval_50540 chr14 14824201 14824401 + 0 NA intron (ENSMUSG00000042567.20, intron 3 of 35) protein_coding-intron (ENSMUSG00000042567.20, intron 2 of 34) 20886 ENSMUSG00000042567.20 ENSMUSG00000042567 ENSMUST00000136826 Nek10 protein_coding Interval_58429 chr15 34469576 34469930 + 0 NA intron (ENSMUSG00000044726.8, intron 1 of 2) protein_coding-intron (ENSMUSG00000044726.8, intron 1 of 2) -11954 ENSMUSG00000115300.1 ENSMUSG00000115300 ENSMUST00000226218 Gm49188 TEC Interval_74339 chr17 49063270 49064244 + 0 NA intron (ENSMUSG00000040490.4, intron 1 of 2) protein_coding-intron (ENSMUSG00000040490.4, intron 1 of 2) 32676 ENSMUSG00000105424.1 ENSMUSG00000105424 ENSMUST00000200509 Gm44304 miRNA Interval_152430 chr7 132997839 132998277 + 0 NA intron (ENSMUSG00000030970.16, intron 6 of 6) protein_coding-intron (ENSMUSG00000030970.16, intron 5 of 10) -14506 ENSMUSG00000085663.1 ENSMUSG00000085663 ENSMUST00000131085 Gm15718 antisense Interval_45700 chr13 57045988 57046628 + 0 NA Intergenic Intergenic -115360 ENSMUSG00000077279.1 ENSMUSG00000077279 ENSMUST00000104091 Gm22777 snoRNA Interval_6407 chr1 107279493 107279762 + 0 NA Intergenic Intergenic -1256 ENSMUSG00000073601.2 ENSMUSG00000073601 ENSMUST00000027565 Serpinb3c protein_coding Interval_85597 chr19 28974655 28975962 + 0 NA Intergenic Intergenic 2269 ENSMUSG00000118165.1 ENSMUSG00000118165 ENSMUST00000237523 Gm3621 processed_pseudogene Interval_81450 chr18 60828715 60829237 + 0 NA promoter-TSS (ENSMUSG00000024613.16) protein_coding-promoter-TSS (ENSMUSG00000024613.16) 16900 ENSMUSG00000093327.1 ENSMUSG00000093327 ENSMUST00000175586 Mir5107 miRNA Interval_109948 chr3 152114555 152115464 + 0 NA intron (ENSMUSG00000039131.15, intron 3 of 5) protein_coding-intron (ENSMUSG00000039131.15, intron 3 of 5) 8570 ENSMUSG00000105698.1 ENSMUSG00000105698 ENSMUST00000198961 Gm31881 antisense Interval_111224 chr4 15053848 15055159 + 0 NA intron (ENSMUSG00000040536.15, intron 5 of 13) protein_coding-intron (ENSMUSG00000040536.15, intron 4 of 12) 31921 ENSMUSG00000087241.1 ENSMUSG00000087241 ENSMUST00000129207 Gm11844 antisense Interval_16604 chr10 65008134 65008330 + 0 NA Intergenic Intergenic 112135 ENSMUSG00000100528.1 ENSMUSG00000100528 ENSMUST00000187710 Gm28881 lincRNA Interval_127081 chr5 100158516 100159957 + 0 NA promoter-TSS (ENSMUSG00000050640.16) protein_coding-promoter-TSS (ENSMUSG00000050640.16) 334 ENSMUSG00000050640.16 ENSMUSG00000050640 ENSMUST00000139520 Tmem150c protein_coding Interval_49330 chr13 111125670 111126395 + 0 NA Intergenic Intergenic 103399 ENSMUSG00000114824.1 ENSMUSG00000114824 ENSMUST00000225326 3110015C05Rik lincRNA Interval_115575 chr4 100973922 100974973 + 0 NA intron (ENSMUSG00000028532.14, intron 14 of 26) protein_coding-intron (ENSMUSG00000028532.14, intron 14 of 26) -20263 ENSMUSG00000028532.14 ENSMUSG00000028532 ENSMUST00000136430 Cachd1 protein_coding Interval_86379 chr19 39652151 39652840 + 0 NA Intergenic Intergenic -3444 ENSMUSG00000062624.5 ENSMUSG00000062624 ENSMUST00000067328 Cyp2c67 protein_coding Interval_30593 chr11 95298220 95299706 + 0 NA intron (ENSMUSG00000038909.16, intron 4 of 14) protein_coding-intron (ENSMUSG00000038909.16, intron 4 of 13) 10550 ENSMUSG00000038909.16 ENSMUSG00000038909 ENSMUST00000143171 Kat7 protein_coding Interval_117584 chr4 124843060 124844222 + 0 NA intron (ENSMUSG00000028890.13, intron 11 of 11) protein_coding-intron (ENSMUSG00000028890.13, intron 10 of 10) 7555 ENSMUSG00000078570.10 ENSMUSG00000078570 ENSMUST00000137769 1110065P20Rik protein_coding Interval_19533 chr10 102434829 102435779 + 0 NA promoter-TSS (ENSMUSG00000112073.1) lincRNA-promoter-TSS (ENSMUSG00000112073.1) 35 ENSMUSG00000112073.1 ENSMUSG00000112073 ENSMUST00000219113 Gm47101 lincRNA Interval_171283 chr9 116041392 116042797 + 0 NA TTS (ENSMUSG00000056880.12) protein_coding-TTS (ENSMUSG00000056880.12) -1030 ENSMUSG00000080848.3 ENSMUSG00000080848 ENSMUST00000117563 Gm9385 processed_pseudogene Interval_156589 chr8 53638434 53639552 + 0 NA promoter-TSS (ENSMUSG00000039396.11) protein_coding-promoter-TSS (ENSMUSG00000039396.11) -47388 ENSMUSG00000039396.11 ENSMUSG00000039396 ENSMUST00000135443 Neil3 protein_coding Interval_13458 chr10 18414446 18415262 + 0 NA intron (ENSMUSG00000039835.16, intron 1 of 3) protein_coding-intron (ENSMUSG00000039835.16, intron 1 of 6) -77613 ENSMUSG00000111313.1 ENSMUSG00000111313 ENSMUST00000213578 Gm18942 processed_pseudogene Interval_160114 chr8 106534397 106535720 + 0 NA intron (ENSMUSG00000061048.8, intron 2 of 15) protein_coding-intron (ENSMUSG00000061048.8, intron 2 of 15) 24167 ENSMUSG00000061048.8 ENSMUSG00000061048 ENSMUST00000080797 Cdh3 protein_coding Interval_114090 chr4 63367818 63369018 + 0 NA intron (ENSMUSG00000039158.11, intron 21 of 21) protein_coding-intron (ENSMUSG00000039158.11, intron 21 of 21) 5969 ENSMUSG00000061540.3 ENSMUSG00000061540 ENSMUST00000075341 Orm2 protein_coding Interval_36987 chr12 55933245 55934062 + 0 NA Intergenic Intergenic -22730 ENSMUSG00000065244.1 ENSMUSG00000065244 ENSMUST00000083310 Gm22296 snRNA Interval_95912 chr2 118306966 118308425 + 0 NA intron (ENSMUSG00000085889.1, intron 2 of 2) protein_coding-intron (ENSMUSG00000040133.2, intron 1 of 2) 2781 ENSMUSG00000085889.1 ENSMUSG00000085889 ENSMUST00000125654 1700054M17Rik antisense Interval_4247 chr1 72157703 72157914 + 0 NA Intergenic Intergenic -35807 ENSMUSG00000102123.1 ENSMUSG00000102123 ENSMUST00000191139 Gm4319 lincRNA Interval_55958 chr14 103234979 103235822 + 0 NA intron (ENSMUSG00000033004.16, intron 26 of 84) protein_coding-intron (ENSMUSG00000033004.16, intron 26 of 84) 111400 ENSMUSG00000033004.16 ENSMUSG00000033004 ENSMUST00000162537 Mycbp2 protein_coding Interval_1438 chr1 23382581 23383756 + 0 NA promoter-TSS (ENSMUSG00000026158.11) protein_coding-promoter-TSS (ENSMUSG00000026158.11) 14604 ENSMUSG00000026158.11 ENSMUSG00000026158 ENSMUST00000189537 Ogfrl1 protein_coding Interval_158759 chr8 85964672 85964872 + 0 NA intron (ENSMUSG00000036879.15, intron 14 of 31) protein_coding-intron (ENSMUSG00000036879.15, intron 14 of 31) -29473 ENSMUSG00000098439.1 ENSMUSG00000098439 ENSMUST00000183645 Hm629797 sense_intronic Interval_74469 chr17 51304831 51306154 + 0 NA Intergenic Intergenic -68430 ENSMUSG00000117168.1 ENSMUSG00000117168 ENSMUST00000233846 Gm49908 processed_pseudogene Interval_100839 chr2 172827387 172828705 + 0 NA Intergenic Intergenic 36295 ENSMUSG00000093160.1 ENSMUSG00000093160 ENSMUST00000175419 Gm22773 miRNA Interval_112576 chr4 43349210 43349542 + 0 NA intron (ENSMUSG00000028457.18, intron 15 of 28) protein_coding-intron (ENSMUSG00000028457.18, intron 16 of 29) -65320 ENSMUSG00000035969.15 ENSMUSG00000035969 ENSMUST00000123447 Rusc2 protein_coding Interval_172749 chrX 48284463 48286550 + 0 NA Intergenic Intergenic -14073 ENSMUSG00000089443.1 ENSMUSG00000089443 ENSMUST00000158818 Gm22528 snRNA Interval_88667 chr2 9442894 9443601 + 0 NA intron (ENSMUSG00000079604.9, intron 3 of 3) lincRNA-intron (ENSMUSG00000079604.9, intron 3 of 3) 90727 ENSMUSG00000079604.9 ENSMUSG00000079604 ENSMUST00000154223 Gm13219 lincRNA Interval_82911 chr18 78983769 78984532 + 0 NA intron (ENSMUSG00000024548.11, intron 2 of 5) protein_coding-intron (ENSMUSG00000024548.11, intron 2 of 5) 125241 ENSMUSG00000024548.11 ENSMUSG00000024548 ENSMUST00000025430 Setbp1 protein_coding Interval_30466 chr11 94558191 94558462 + 0 NA exon (ENSMUSG00000076435.3, exon 16 of 16) protein_coding-exon (ENSMUSG00000076435.3, exon 16 of 16) -6721 ENSMUSG00000039084.8 ENSMUSG00000039084 ENSMUST00000040418 Chad protein_coding Interval_171631 chr9 119691431 119691881 + 0 NA intron (ENSMUSG00000034533.10, intron 1 of 26) protein_coding-intron (ENSMUSG00000034533.10, intron 2 of 27) -3617 ENSMUSG00000034533.10 ENSMUSG00000034533 ENSMUST00000213401 Scn10a protein_coding Interval_123852 chr5 35960432 35961007 + 0 NA intron (ENSMUSG00000029094.12, intron 6 of 14) protein_coding-intron (ENSMUSG00000029094.12, intron 6 of 16) -23469 ENSMUSG00000029094.12 ENSMUSG00000029094 ENSMUST00000201482 Afap1 protein_coding Interval_43569 chr13 33661326 33661664 + 0 NA promoter-TSS (ENSMUSG00000047889.9) protein_coding-promoter-TSS (ENSMUSG00000047889.9) 20 ENSMUSG00000047889.9 ENSMUSG00000047889 ENSMUST00000221681 Serpinb6d protein_coding Interval_23023 chr11 19018814 19021265 + 0 NA Intergenic Intergenic -1070 ENSMUSG00000020160.18 ENSMUSG00000020160 ENSMUST00000137300 Meis1 protein_coding Interval_28232 chr11 74562894 74563809 + 0 NA intron (ENSMUSG00000038807.19, intron 3 of 25) protein_coding-intron (ENSMUSG00000038807.19, intron 3 of 25) 47564 ENSMUSG00000038807.19 ENSMUSG00000038807 ENSMUST00000145524 Rap1gap2 protein_coding Interval_104892 chr3 78604058 78604298 + 0 NA Intergenic Intergenic -115541 ENSMUSG00000084370.3 ENSMUSG00000084370 ENSMUST00000117905 Gm15442 processed_pseudogene Interval_41007 chr12 110555357 110556331 + 0 NA intron (ENSMUSG00000017843.14, intron 10 of 12) protein_coding-intron (ENSMUSG00000017843.14, intron 8 of 13) -34668 ENSMUSG00000113361.1 ENSMUSG00000113361 ENSMUST00000221143 B930059L03Rik lincRNA Interval_120851 chr4 151036643 151037081 + 0 NA intron (ENSMUSG00000028957.12, intron 5 of 17) protein_coding-intron (ENSMUSG00000028957.12, intron 5 of 20) -5365 ENSMUSG00000028957.12 ENSMUSG00000028957 ENSMUST00000128283 Per3 protein_coding Interval_3097 chr1 53289018 53289819 + 0 NA intron (ENSMUSG00000026098.13, intron 1 of 4) protein_coding-intron (ENSMUSG00000026098.13, intron 1 of 12) 7597 ENSMUSG00000026098.13 ENSMUSG00000026098 ENSMUST00000188890 Pms1 protein_coding Interval_39575 chr12 90983923 90984126 + 0 NA Intergenic Intergenic 2799 ENSMUSG00000084566.1 ENSMUSG00000084566 ENSMUST00000122617 Gm26477 misc_RNA Interval_81632 chr18 62561825 62562647 + 0 NA intron (ENSMUSG00000044176.12, intron 1 of 8) protein_coding-intron (ENSMUSG00000044176.12, intron 1 of 8) 16916 ENSMUSG00000110576.2 ENSMUSG00000110576 ENSMUST00000212026 Gm36368 protein_coding Interval_159191 chr8 91502788 91503767 + 0 NA intron (ENSMUSG00000055932.15, intron 4 of 5) protein_coding-intron (ENSMUSG00000055932.15, intron 7 of 8) 10258 ENSMUSG00000109642.1 ENSMUSG00000109642 ENSMUST00000211048 Gm45289 TEC Interval_132547 chr5 146210242 146211169 + 0 NA TTS (ENSMUSG00000029634.15) protein_coding-TTS (ENSMUSG00000029634.15) -5916 ENSMUSG00000105636.1 ENSMUSG00000105636 ENSMUST00000199177 Gm43625 lincRNA Interval_148798 chr7 88000820 88001513 + 0 NA intron (ENSMUSG00000049583.15, intron 3 of 8) protein_coding-intron (ENSMUSG00000049583.15, intron 3 of 7) -61895 ENSMUSG00000109461.1 ENSMUSG00000109461 ENSMUST00000207808 Gm44848 TEC Interval_32126 chr11 105373743 105374203 + 0 NA intron (ENSMUSG00000078627.9, intron 9 of 11) protein_coding-intron (ENSMUSG00000078627.9, intron 9 of 11) 10721 ENSMUSG00000086487.1 ENSMUSG00000086487 ENSMUST00000153672 Gm11638 processed_transcript Interval_7890 chr1 134399226 134400422 + 0 NA Intergenic Intergenic -5735 ENSMUSG00000026456.18 ENSMUSG00000026456 ENSMUST00000172795 Cyb5r1 protein_coding Interval_20306 chr10 116771187 116772038 + 0 NA Intergenic Intergenic 42359 ENSMUSG00000112924.1 ENSMUSG00000112924 ENSMUST00000218193 4930579P08Rik lincRNA Interval_55728 chr14 99346511 99346719 + 0 NA Intergenic Intergenic 5554 ENSMUSG00000084700.1 ENSMUSG00000084700 ENSMUST00000122751 Gm22984 snRNA Interval_94451 chr2 91308506 91308897 + 0 NA intron (ENSMUSG00000040591.18, intron 3 of 3) protein_coding-intron (ENSMUSG00000040591.18, intron 3 of 8) 35488 ENSMUSG00000081248.1 ENSMUSG00000081248 ENSMUST00000120422 Gm13787 processed_pseudogene Interval_56013 chr14 104356465 104356713 + 0 NA intron (ENSMUSG00000115424.1, intron 1 of 4) lincRNA-intron (ENSMUSG00000115424.1, intron 1 of 4) 102747 ENSMUSG00000115424.1 ENSMUSG00000115424 ENSMUST00000228613 D130079A08Rik lincRNA Interval_17428 chr10 76569554 76571256 + 0 NA TTS (ENSMUSG00000009115.5) protein_coding-TTS (ENSMUSG00000009115.5) 127 ENSMUSG00000085468.1 ENSMUSG00000085468 ENSMUST00000136382 Gm15343 antisense Interval_150368 chr7 109959691 109960847 + 0 NA promoter-TSS (ENSMUSG00000035901.14) protein_coding-promoter-TSS (ENSMUSG00000035901.14) 26018 ENSMUSG00000047554.14 ENSMUSG00000047554 ENSMUST00000207300 Tmem41b protein_coding Interval_90192 chr2 28923715 28924331 + 0 NA Intergenic Intergenic -8518 ENSMUSG00000026805.14 ENSMUSG00000026805 ENSMUST00000174027 Barhl1 protein_coding Interval_74407 chr17 49989473 49990215 + 0 NA Intergenic Intergenic 17017 ENSMUSG00000118535.1 ENSMUSG00000118535 ENSMUST00000239097 AC133946.1 unitary_pseudogene Interval_2899 chr1 48698169 48699217 + 0 NA Intergenic Intergenic 34397 ENSMUSG00000101721.1 ENSMUSG00000101721 ENSMUST00000189223 Gm8354 processed_pseudogene Interval_40698 chr12 107527890 107528871 + 0 NA Intergenic Intergenic 39748 ENSMUSG00000060375.2 ENSMUSG00000060375 ENSMUST00000082269 3110018I06Rik lincRNA Interval_170544 chr9 108611387 108612508 + 0 NA intron (ENSMUSG00000064145.12, intron 6 of 7) protein_coding-intron (ENSMUSG00000064145.12, intron 8 of 15) -14371 ENSMUSG00000006675.10 ENSMUSG00000006675 ENSMUST00000193621 P4htm protein_coding Interval_77506 chr17 90454118 90456219 + 0 NA promoter-TSS (ENSMUSG00000024109.18) protein_coding-promoter-TSS (ENSMUSG00000024109.18) 279 ENSMUSG00000073367.5 ENSMUSG00000073367 ENSMUST00000097270 Gm10493 processed_pseudogene Interval_357 chr1 4507709 4507908 + 0 NA Intergenic Intergenic 10334 ENSMUSG00000104238.1 ENSMUSG00000104238 ENSMUST00000194935 Gm37587 processed_transcript Interval_141309 chr6 127103137 127104191 + 0 NA intron (ENSMUSG00000038028.9, intron 1 of 5) protein_coding-intron (ENSMUSG00000038028.9, intron 1 of 5) 3367 ENSMUSG00000097525.2 ENSMUSG00000097525 ENSMUST00000180653 Platr31 antisense Interval_63435 chr15 101076807 101079347 + 0 NA intron (ENSMUSG00000095440.2, intron 1 of 1) protein_coding-intron (ENSMUSG00000095440.2, intron 1 of 1) 490 ENSMUSG00000095440.2 ENSMUSG00000095440 ENSMUST00000213610 Fignl2 protein_coding Interval_154229 chr8 13600214 13601068 + 0 NA intron (ENSMUSG00000031453.16, intron 5 of 6) protein_coding-intron (ENSMUSG00000031453.16, intron 4 of 23) -38180 ENSMUSG00000031452.15 ENSMUSG00000031452 ENSMUST00000132787 1700029H14Rik protein_coding Interval_112911 chr4 45965562 45966839 + 0 NA intron (ENSMUSG00000035517.17, intron 1 of 16) protein_coding-intron (ENSMUSG00000035517.17, intron 1 of 16) -59901 ENSMUSG00000035517.17 ENSMUSG00000035517 ENSMUST00000155936 Tdrd7 protein_coding Interval_126114 chr5 77488050 77488255 + 0 NA intron (ENSMUSG00000106985.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000106985.1, intron 1 of 1) 2425 ENSMUSG00000106985.1 ENSMUSG00000106985 ENSMUST00000201899 Gm42761 lincRNA Interval_124446 chr5 47758229 47758426 + 0 NA Intergenic Intergenic 58482 ENSMUSG00000105616.1 ENSMUSG00000105616 ENSMUST00000198805 Gm3010 processed_pseudogene Interval_61875 chr15 84829254 84829921 + 0 NA intron (ENSMUSG00000016624.15, intron 2 of 11) protein_coding-intron (ENSMUSG00000016624.15, intron 2 of 12) -36730 ENSMUSG00000097954.1 ENSMUSG00000097954 ENSMUST00000182243 Gm4217 processed_pseudogene Interval_28847 chr11 78750854 78752050 + 0 NA exon (ENSMUSG00000049489.5, exon 1 of 1) protein_coding-exon (ENSMUSG00000049489.5, exon 1 of 1) 277 ENSMUSG00000049489.5 ENSMUSG00000049489 ENSMUST00000059468 Ccnq protein_coding Interval_118012 chr4 127986183 127986791 + 0 NA Intergenic Intergenic -15536 ENSMUSG00000028813.2 ENSMUSG00000028813 ENSMUST00000030614 CK137956 protein_coding Interval_25086 chr11 43766735 43767733 + 0 NA Intergenic Intergenic -19242 ENSMUSG00000041278.10 ENSMUSG00000041278 ENSMUST00000147984 Ttc1 protein_coding Interval_17681 chr10 79199630 79200773 + 0 NA Intergenic Intergenic -47491 ENSMUSG00000055515.8 ENSMUSG00000055515 ENSMUST00000020547 Vmn2r81 protein_coding Interval_61177 chr15 79776941 79777309 + 0 NA promoter-TSS (ENSMUSG00000022420.16) protein_coding-promoter-TSS (ENSMUSG00000022420.16) -12244 ENSMUSG00000022420.16 ENSMUSG00000022420 ENSMUST00000161646 Dnal4 protein_coding Interval_41633 chr12 117234893 117235874 + 0 NA intron (ENSMUSG00000101930.1, intron 2 of 2) protein_coding-intron (ENSMUSG00000056553.14, intron 17 of 22) -15434 ENSMUSG00000065538.1 ENSMUSG00000065538 ENSMUST00000083604 Mir153 miRNA Interval_12475 chr1 193861391 193861676 + 0 NA Intergenic Intergenic -5476 ENSMUSG00000104182.1 ENSMUSG00000104182 ENSMUST00000194272 Gm21362 processed_pseudogene Interval_124287 chr5 43621342 43621681 + 0 NA Intergenic Intergenic -19780 ENSMUSG00000087290.2 ENSMUSG00000087290 ENSMUST00000152116 Gm15866 antisense Interval_127038 chr5 99856644 99857461 + 0 NA Intergenic Intergenic -13196 ENSMUSG00000084445.1 ENSMUSG00000084445 ENSMUST00000122496 Gm26252 snoRNA Interval_48874 chr13 104228338 104229512 + 0 NA promoter-TSS (ENSMUSG00000021713.9) protein_coding-promoter-TSS (ENSMUSG00000021713.9) -82 ENSMUSG00000021713.9 ENSMUSG00000021713 ENSMUST00000223755 Ppwd1 protein_coding Interval_42039 chr13 6688934 6691594 + 0 NA Intergenic Intergenic 17125 ENSMUSG00000113545.1 ENSMUSG00000113545 ENSMUST00000223351 Gm48238 processed_pseudogene Interval_29732 chr11 86458759 86459943 + 0 NA Intergenic Intergenic -21936 ENSMUSG00000064526.1 ENSMUSG00000064526 ENSMUST00000082592 Gm26439 snRNA Interval_43314 chr13 28988269 28989574 + 0 NA Intergenic Intergenic -25478 ENSMUSG00000086363.7 ENSMUSG00000086363 ENSMUST00000145801 A330102I10Rik lincRNA Interval_15266 chr10 43938697 43939926 + 0 NA intron (ENSMUSG00000019864.14, intron 5 of 5) protein_coding-intron (ENSMUSG00000019864.14, intron 8 of 8) -8585 ENSMUSG00000019864.14 ENSMUSG00000019864 ENSMUST00000214453 Rtn4ip1 protein_coding Interval_135462 chr6 39448016 39448867 + 0 NA Intergenic Intergenic -26022 ENSMUSG00000064900.1 ENSMUSG00000064900 ENSMUST00000082966 Gm25402 snoRNA Interval_108365 chr3 125937634 125939223 + 0 NA intron (ENSMUSG00000032854.12, intron 1 of 1) protein_coding-intron (ENSMUSG00000032854.12, intron 1 of 5) -22543 ENSMUSG00000032854.12 ENSMUSG00000032854 ENSMUST00000196481 Ugt8a protein_coding Interval_7587 chr1 132353607 132354349 + 0 NA Intergenic Intergenic 11955 ENSMUSG00000100658.1 ENSMUSG00000100658 ENSMUST00000189288 F730311O21Rik lincRNA Interval_98780 chr2 154898867 154899856 + 0 NA intron (ENSMUSG00000027596.10, intron 1 of 4) protein_coding-intron (ENSMUSG00000027596.10, intron 1 of 4) -6579 ENSMUSG00000074656.12 ENSMUSG00000074656 ENSMUST00000135524 Eif2s2 protein_coding Interval_127111 chr5 100360660 100361466 + 0 NA TTS (ENSMUSG00000035325.16) protein_coding-TTS (ENSMUSG00000035325.16) -5944 ENSMUSG00000085915.1 ENSMUSG00000085915 ENSMUST00000150506 Gm8091 unprocessed_pseudogene Interval_3930 chr1 64905060 64905651 + 0 NA intron (ENSMUSG00000051344.13, intron 2 of 4) protein_coding-intron (ENSMUSG00000051344.13, intron 3 of 7) -29047 ENSMUSG00000097264.1 ENSMUSG00000097264 ENSMUST00000181350 Rpl31-ps24 processed_pseudogene Interval_27200 chr11 64034820 64036463 + 0 NA intron (ENSMUSG00000042148.8, intron 4 of 6) protein_coding-intron (ENSMUSG00000042148.8, intron 4 of 6) 23026 ENSMUSG00000084884.1 ENSMUSG00000084884 ENSMUST00000130860 Gm12289 antisense Interval_129092 chr5 117360140 117361237 + 0 NA promoter-TSS (ENSMUSG00000029364.15) protein_coding-promoter-TSS (ENSMUSG00000029364.15) -11345 ENSMUSG00000081274.2 ENSMUSG00000081274 ENSMUST00000122416 Gm15727 processed_pseudogene Interval_61565 chr15 82423051 82423258 + 0 NA intron (ENSMUSG00000116419.1, intron 1 of 3) unprocessed_pseudogene-intron (ENSMUSG00000116419.1, intron 1 of 3) 293 ENSMUSG00000116419.1 ENSMUSG00000116419 ENSMUST00000229517 Gm19267 unprocessed_pseudogene Interval_81803 chr18 64898521 64899122 + 0 NA intron (ENSMUSG00000024589.18, intron 1 of 30) protein_coding-intron (ENSMUSG00000024589.18, intron 1 of 29) -10330 ENSMUSG00000114210.2 ENSMUSG00000114210 ENSMUST00000224731 A330084C13Rik antisense Interval_24706 chr11 36008142 36008723 + 0 NA exon (ENSMUSG00000049336.16, exon 29 of 29) protein_coding-exon (ENSMUSG00000049336.16, exon 29 of 29) 12378 ENSMUSG00000081571.1 ENSMUSG00000081571 ENSMUST00000117261 Gm12125 processed_pseudogene Interval_133952 chr6 16374137 16374391 + 0 NA Intergenic Intergenic 95686 ENSMUSG00000108295.2 ENSMUSG00000108295 ENSMUST00000203052 Gm36406 processed_transcript Interval_96208 chr2 120537486 120537710 + 0 NA intron (ENSMUSG00000027288.16, intron 2 of 2) protein_coding-intron (ENSMUSG00000027288.16, intron 2 of 2) 2262 ENSMUSG00000027288.16 ENSMUSG00000027288 ENSMUST00000147353 Zfp106 protein_coding Interval_31366 chr11 100281768 100282844 + 0 NA intron (ENSMUSG00000086163.1, intron 1 of 3) antisense-intron (ENSMUSG00000086163.1, intron 1 of 3) 8980 ENSMUSG00000086163.1 ENSMUSG00000086163 ENSMUST00000132973 Gm14206 antisense Interval_40216 chr12 102596267 102596819 + 0 NA intron (ENSMUSG00000057963.9, intron 3 of 4) protein_coding-intron (ENSMUSG00000057963.9, intron 4 of 9) -5133 ENSMUSG00000102953.1 ENSMUSG00000102953 ENSMUST00000192133 Gm37019 TEC Interval_31629 chr11 101850398 101850785 + 0 NA Intergenic Intergenic -35646 ENSMUSG00000085594.1 ENSMUSG00000085594 ENSMUST00000147438 Gm11551 antisense Interval_51541 chr14 29993494 29993859 + 0 NA TTS (ENSMUSG00000015971.5) protein_coding-TTS (ENSMUSG00000015971.5) 4783 ENSMUSG00000015966.17 ENSMUSG00000015966 ENSMUST00000225746 Il17rb protein_coding Interval_166227 chr9 57625425 57626561 + 0 NA TTS (ENSMUSG00000032312.7) protein_coding-TTS (ENSMUSG00000032312.7) -5219 ENSMUSG00000056271.13 ENSMUSG00000056271 ENSMUST00000044937 Lman1l protein_coding Interval_59748 chr15 59016281 59017494 + 0 NA intron (ENSMUSG00000022353.10, intron 3 of 14) protein_coding-intron (ENSMUSG00000022353.10, intron 3 of 14) 32751 ENSMUSG00000115062.1 ENSMUSG00000115062 ENSMUST00000226216 4930544F09Rik antisense Interval_3147 chr1 54001437 54001607 + 0 NA intron (ENSMUSG00000042807.15, intron 2 of 3) protein_coding-intron (ENSMUSG00000042807.15, intron 2 of 28) -114581 ENSMUSG00000087949.1 ENSMUSG00000087949 ENSMUST00000157324 Gm24251 snRNA Interval_63053 chr15 98857674 98857982 + 0 NA exon (ENSMUSG00000048154.17, exon 17 of 55) protein_coding-exon (ENSMUSG00000048154.17, exon 17 of 55) -8591 ENSMUSG00000048154.17 ENSMUSG00000048154 ENSMUST00000184363 Kmt2d protein_coding Interval_76405 chr17 79979709 79981018 + 0 NA intron (ENSMUSG00000117415.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000117415.1, intron 1 of 1) 1299 ENSMUSG00000117415.1 ENSMUSG00000117415 ENSMUST00000234800 Gm41625 lincRNA Interval_141706 chr6 133899880 133900065 + 0 NA Intergenic Intergenic 32437 ENSMUSG00000107771.1 ENSMUSG00000107771 ENSMUST00000203939 Gm8956 processed_pseudogene Interval_748 chr1 10596059 10596436 + 0 NA intron (ENSMUSG00000042501.12, intron 1 of 9) protein_coding-intron (ENSMUSG00000042501.12, intron 1 of 10) -40587 ENSMUSG00000094979.1 ENSMUSG00000094979 ENSMUST00000179958 Gm25253 snRNA Interval_115595 chr4 101240201 101240397 + 0 NA intron (ENSMUSG00000028530.14, intron 1 of 2) protein_coding-intron (ENSMUSG00000028530.14, intron 1 of 24) 24982 ENSMUSG00000028530.14 ENSMUSG00000028530 ENSMUST00000125968 Jak1 protein_coding Interval_79412 chr18 31736112 31736336 + 0 NA Intergenic Intergenic -2491 ENSMUSG00000117533.1 ENSMUSG00000117533 ENSMUST00000234849 Gm50060 processed_pseudogene Interval_119942 chr4 141040659 141042235 + 0 NA intron (ENSMUSG00000040860.16, intron 10 of 34) protein_coding-intron (ENSMUSG00000040860.16, intron 10 of 34) 16752 ENSMUSG00000040860.16 ENSMUSG00000040860 ENSMUST00000144196 Crocc protein_coding Interval_105317 chr3 84852703 84853515 + 0 NA intron (ENSMUSG00000028086.15, intron 1 of 2) protein_coding-intron (ENSMUSG00000028086.15, intron 1 of 13) -20782 ENSMUSG00000102919.1 ENSMUSG00000102919 ENSMUST00000193246 Gm37726 TEC Interval_68118 chr16 65370708 65371360 + 0 NA Intergenic Intergenic 31916 ENSMUSG00000116687.1 ENSMUSG00000116687 ENSMUST00000232590 Gm49629 processed_pseudogene Interval_14001 chr10 25392663 25392892 + 0 NA intron (ENSMUSG00000019978.16, intron 1 of 17) protein_coding-intron (ENSMUSG00000019978.16, intron 1 of 19) 23408 ENSMUSG00000112445.1 ENSMUSG00000112445 ENSMUST00000219193 Gm47830 processed_pseudogene Interval_22879 chr11 17042168 17042433 + 0 NA intron (ENSMUSG00000020120.15, intron 1 of 9) protein_coding-intron (ENSMUSG00000020120.15, intron 1 of 9) -9503 ENSMUSG00000044629.5 ENSMUSG00000044629 ENSMUST00000058159 Cnrip1 protein_coding Interval_55060 chr14 77579720 77581208 + 0 NA intron (ENSMUSG00000022012.9, intron 6 of 7) protein_coding-intron (ENSMUSG00000022012.9, intron 9 of 18) 7608 ENSMUSG00000022012.9 ENSMUSG00000022012 ENSMUST00000228845 Enox1 protein_coding Interval_50474 chr14 13906452 13908181 + 0 NA intron (ENSMUSG00000084902.2, intron 1 of 18) protein_coding-intron (ENSMUSG00000084902.2, intron 1 of 18) 7162 ENSMUSG00000084902.2 ENSMUSG00000084902 ENSMUST00000144914 Gm281 protein_coding Interval_115257 chr4 94941267 94941953 + 0 NA TTS (ENSMUSG00000062627.9) protein_coding-TTS (ENSMUSG00000062627.9) 5989 ENSMUSG00000083179.3 ENSMUSG00000083179 ENSMUST00000121965 Gm12693 processed_pseudogene Interval_90168 chr2 28699311 28700568 + 0 NA promoter-TSS (ENSMUSG00000026807.8) protein_coding-promoter-TSS (ENSMUSG00000026807.8) -265 ENSMUSG00000026809.15 ENSMUSG00000026809 ENSMUST00000145014 Spaca9 protein_coding Interval_58951 chr15 40654410 40656399 + 0 NA promoter-TSS (ENSMUSG00000022306.9) protein_coding-promoter-TSS (ENSMUSG00000022306.9) 53 ENSMUSG00000022306.9 ENSMUSG00000022306 ENSMUST00000230319 Zfpm2 protein_coding Interval_164433 chr9 36996273 36996968 + 0 NA intron (ENSMUSG00000035934.16, intron 2 of 4) protein_coding-intron (ENSMUSG00000035934.16, intron 2 of 12) -19138 ENSMUSG00000093721.1 ENSMUSG00000093721 ENSMUST00000176020 Gm3896 antisense Interval_35903 chr12 31794896 31795353 + 0 NA intron (ENSMUSG00000035933.5, intron 8 of 22) protein_coding-intron (ENSMUSG00000035933.5, intron 8 of 22) 47065 ENSMUSG00000112779.1 ENSMUSG00000112779 ENSMUST00000219973 Gm18029 processed_pseudogene Interval_143659 chr7 14047220 14048320 + 0 NA Intergenic Intergenic 41112 ENSMUSG00000099744.1 ENSMUSG00000099744 ENSMUST00000186718 Tmem167-ps3 processed_pseudogene Interval_19114 chr10 94699626 94700049 + 0 NA intron (ENSMUSG00000020024.7, intron 1 of 3) protein_coding-intron (ENSMUSG00000020024.7, intron 1 of 15) 11119 ENSMUSG00000020024.7 ENSMUSG00000020024 ENSMUST00000218076 Cep83 protein_coding Interval_131329 chr5 136517393 136517702 + 0 NA intron (ENSMUSG00000029705.17, intron 1 of 1) protein_coding-intron (ENSMUSG00000029705.17, intron 1 of 23) 18930 ENSMUSG00000104369.1 ENSMUSG00000104369 ENSMUST00000192800 Gm38082 TEC Interval_70949 chr17 16676244 16677235 + 0 NA Intergenic Intergenic -6553 ENSMUSG00000116864.1 ENSMUSG00000116864 ENSMUST00000231447 Gm3320 processed_pseudogene Interval_130148 chr5 124536970 124537227 + 0 NA Intergenic Intergenic -3857 ENSMUSG00000029390.13 ENSMUSG00000029390 ENSMUST00000135464 Tmed2 protein_coding Interval_34473 chr12 4516231 4516443 + 0 NA intron (ENSMUSG00000111938.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000111938.1, intron 1 of 1) 7020 ENSMUSG00000111938.1 ENSMUSG00000111938 ENSMUST00000218374 2900045O20Rik lincRNA Interval_8366 chr1 138153990 138154529 + 0 NA intron (ENSMUSG00000026395.16, intron 2 of 7) protein_coding-intron (ENSMUSG00000026395.16, intron 2 of 2) 13424 ENSMUSG00000104291.1 ENSMUSG00000104291 ENSMUST00000194467 A130071D04Rik TEC Interval_174848 chrX 169827831 169828586 + 0 NA promoter-TSS (ENSMUSG00000035299.16) protein_coding-promoter-TSS (ENSMUSG00000035299.16) -48651 ENSMUSG00000055357.8 ENSMUSG00000055357 ENSMUST00000112102 4933400A11Rik protein_coding Interval_18817 chr10 91110931 91111131 + 0 NA Intergenic Intergenic 7505 ENSMUSG00000077167.1 ENSMUSG00000077167 ENSMUST00000103979 Gm24119 snoRNA Interval_2568 chr1 40501598 40501787 + 0 NA TTS (ENSMUSG00000026070.15) protein_coding-TTS (ENSMUSG00000026070.15) -13713 ENSMUSG00000026068.11 ENSMUSG00000026068 ENSMUST00000160468 Il18rap protein_coding Interval_122692 chr5 24697806 24698049 + 0 NA intron (ENSMUSG00000028954.11, intron 6 of 13) protein_coding-intron (ENSMUSG00000028954.11, intron 7 of 14) 6763 ENSMUSG00000097275.1 ENSMUSG00000097275 ENSMUST00000181925 Gm26648 antisense Interval_63054 chr15 98862951 98863236 + 0 NA exon (ENSMUSG00000048154.17, exon 11 of 55) protein_coding-exon (ENSMUSG00000048154.17, exon 11 of 55) 9520 ENSMUSG00000115980.1 ENSMUSG00000115980 ENSMUST00000230986 Gm49437 TEC Interval_75934 chr17 73196378 73196643 + 0 NA intron (ENSMUSG00000054469.14, intron 4 of 5) protein_coding-intron (ENSMUSG00000054469.14, intron 4 of 5) 2598 ENSMUSG00000088224.1 ENSMUSG00000088224 ENSMUST00000157599 Gm25406 snoRNA Interval_23159 chr11 20230183 20232262 + 0 NA intron (ENSMUSG00000044066.14, intron 5 of 6) protein_coding-intron (ENSMUSG00000044066.14, intron 5 of 6) 18207 ENSMUSG00000044066.14 ENSMUSG00000044066 ENSMUST00000161218 Cep68 protein_coding Interval_115192 chr4 94124097 94124855 + 0 NA intron (ENSMUSG00000085931.1, intron 4 of 5) lincRNA-intron (ENSMUSG00000085931.1, intron 4 of 5) 26186 ENSMUSG00000077622.1 ENSMUSG00000077622 ENSMUST00000104434 Gm23836 snoRNA Interval_51642 chr14 31017990 31019622 + 0 NA promoter-TSS (ENSMUSG00000042323.17) protein_coding-promoter-TSS (ENSMUSG00000042323.17) 287 ENSMUSG00000042354.7 ENSMUSG00000042354 ENSMUST00000227170 Gnl3 protein_coding Interval_158794 chr8 86699496 86699697 + 0 NA intron (ENSMUSG00000047866.18, intron 5 of 8) protein_coding-intron (ENSMUSG00000047866.18, intron 11 of 14) -28253 ENSMUSG00000064624.1 ENSMUSG00000064624 ENSMUST00000082690 Gm22305 snRNA Interval_97367 chr2 135511941 135512735 + 0 NA intron (ENSMUSG00000085631.1, intron 1 of 1) antisense-intron (ENSMUSG00000085631.1, intron 1 of 1) 71246 ENSMUSG00000085631.1 ENSMUSG00000085631 ENSMUST00000129868 9630028H03Rik antisense Interval_136654 chr6 57189845 57190975 + 0 NA Intergenic Intergenic 1903 ENSMUSG00000093728.1 ENSMUSG00000093728 ENSMUST00000177200 Vmn1r-ps8 unprocessed_pseudogene Interval_66817 chr16 37853493 37855253 + 0 NA promoter-TSS (ENSMUSG00000084602.1) rRNA-promoter-TSS (ENSMUSG00000084602.1) -409 ENSMUSG00000084602.1 ENSMUSG00000084602 ENSMUST00000122653 n-R5s34 rRNA Interval_59284 chr15 50736590 50736857 + 0 NA intron (ENSMUSG00000038679.16, intron 7 of 8) protein_coding-intron (ENSMUSG00000038679.16, intron 5 of 6) 152391 ENSMUSG00000084458.1 ENSMUSG00000084458 ENSMUST00000122509 Mir1907 miRNA Interval_8437 chr1 139376803 139377155 + 0 NA promoter-TSS (ENSMUSG00000063681.14) protein_coding-promoter-TSS (ENSMUSG00000063681.14) -2473 ENSMUSG00000103844.1 ENSMUSG00000103844 ENSMUST00000192824 4933436E23Rik lincRNA Interval_89990 chr2 27120744 27120935 + 0 NA intron (ENSMUSG00000009216.7, intron 1 of 2) protein_coding-intron (ENSMUSG00000009216.7, intron 1 of 2) 21652 ENSMUSG00000009216.7 ENSMUSG00000009216 ENSMUST00000151224 Fam163b protein_coding Interval_162976 chr9 13999807 14000610 + 0 NA Intergenic Intergenic 54927 ENSMUSG00000111871.1 ENSMUSG00000111871 ENSMUST00000214014 Gm47557 lincRNA Interval_114557 chr4 82478790 82479825 + 0 NA intron (ENSMUSG00000008575.17, intron 2 of 4) protein_coding-intron (ENSMUSG00000008575.17, intron 2 of 11) -28709 ENSMUSG00000087413.1 ENSMUSG00000087413 ENSMUST00000139835 Gm11266 antisense Interval_32409 chr11 107386685 107387126 + 0 NA promoter-TSS (ENSMUSG00000087683.1) antisense-promoter-TSS (ENSMUSG00000087683.1) -78 ENSMUSG00000087683.1 ENSMUSG00000087683 ENSMUST00000129139 Gm11712 antisense Interval_94912 chr2 101678244 101679392 + 0 NA intron (ENSMUSG00000027164.8, intron 1 of 1) protein_coding-intron (ENSMUSG00000027164.8, intron 1 of 7) -5397 ENSMUSG00000027164.8 ENSMUSG00000027164 ENSMUST00000144063 Traf6 protein_coding Interval_79781 chr18 35087084 35087894 + 0 NA exon (ENSMUSG00000117727.1, exon 1 of 2) lincRNA-exon (ENSMUSG00000117727.1, exon 1 of 2) 134 ENSMUSG00000117727.1 ENSMUSG00000117727 ENSMUST00000238134 Gm3587 lincRNA Interval_136552 chr6 55485408 55485714 + 0 NA intron (ENSMUSG00000029778.12, intron 10 of 12) protein_coding-intron (ENSMUSG00000029778.12, intron 13 of 16) 25325 ENSMUSG00000029778.12 ENSMUSG00000029778 ENSMUST00000165786 Adcyap1r1 protein_coding Interval_11047 chr1 178891600 178892375 + 0 NA intron (ENSMUSG00000026494.12, intron 10 of 14) protein_coding-intron (ENSMUSG00000026494.12, intron 7 of 11) 25627 ENSMUSG00000089713.1 ENSMUSG00000089713 ENSMUST00000162545 Gm16564 antisense Interval_16216 chr10 61491937 61492713 + 0 NA intron (ENSMUSG00000037151.8, intron 2 of 4) protein_coding-intron (ENSMUSG00000037151.8, intron 2 of 4) 3965 ENSMUSG00000112080.1 ENSMUSG00000112080 ENSMUST00000220313 Gm47595 antisense Interval_1852 chr1 34139435 34140984 + 0 NA intron (ENSMUSG00000026131.20, intron 7 of 32) protein_coding-intron (ENSMUSG00000026131.20, intron 6 of 97) 22850 ENSMUSG00000105982.1 ENSMUSG00000105982 ENSMUST00000198033 Mir6896 miRNA Interval_156653 chr8 56505189 56506675 + 0 NA Intergenic Intergenic 15571 ENSMUSG00000077585.1 ENSMUSG00000077585 ENSMUST00000104397 Gm24375 snoRNA Interval_30354 chr11 93817702 93818008 + 0 NA Intergenic Intergenic 58288 ENSMUSG00000054079.12 ENSMUSG00000054079 ENSMUST00000134807 Utp18 protein_coding Interval_115645 chr4 101574993 101575808 + 0 NA intron (ENSMUSG00000028528.17, intron 1 of 18) protein_coding-intron (ENSMUSG00000028528.17, intron 1 of 18) 20305 ENSMUSG00000089446.1 ENSMUSG00000089446 ENSMUST00000158821 Gm22533 misc_RNA Interval_115582 chr4 101068747 101069833 + 0 NA promoter-TSS (ENSMUSG00000035275.14) protein_coding-promoter-TSS (ENSMUSG00000035275.14) -189 ENSMUSG00000035275.14 ENSMUSG00000035275 ENSMUST00000148148 Raver2 protein_coding Interval_125405 chr5 66720622 66721380 + 0 NA Intergenic Intergenic 2631 ENSMUSG00000107284.1 ENSMUSG00000107284 ENSMUST00000202958 Gm43280 TEC Interval_30279 chr11 92791877 92792164 + 0 NA TTS (ENSMUSG00000081141.1) processed_pseudogene-TTS (ENSMUSG00000081141.1) 1259 ENSMUSG00000081141.1 ENSMUSG00000081141 ENSMUST00000118039 Gm11501 processed_pseudogene Interval_132307 chr5 144069648 144070381 + 0 NA promoter-TSS (ENSMUSG00000105150.1) processed_pseudogene-promoter-TSS (ENSMUSG00000105150.1) -824 ENSMUSG00000105150.1 ENSMUSG00000105150 ENSMUST00000197465 Gm43615 processed_pseudogene Interval_77679 chr17 94090094 94090818 + 0 NA Intergenic Intergenic 41815 ENSMUSG00000117543.1 ENSMUSG00000117543 ENSMUST00000235005 Gm50004 processed_pseudogene Interval_59114 chr15 44266477 44266705 + 0 NA Intergenic Intergenic -15389 ENSMUSG00000115730.1 ENSMUSG00000115730 ENSMUST00000226624 Gm7459 processed_pseudogene Interval_55588 chr14 94009851 94010139 + 0 NA Intergenic Intergenic 27853 ENSMUSG00000115797.1 ENSMUSG00000115797 ENSMUST00000227233 Gm48981 processed_pseudogene Interval_126136 chr5 78209936 78210343 + 0 NA Intergenic Intergenic -263746 ENSMUSG00000044058.8 ENSMUSG00000044058 ENSMUST00000174153 Mthfr-ps1 processed_pseudogene Interval_80236 chr18 38457020 38457402 + 0 NA intron (ENSMUSG00000024425.4, intron 3 of 3) protein_coding-intron (ENSMUSG00000024425.4, intron 6 of 7) 5901 ENSMUSG00000024425.4 ENSMUSG00000024425 ENSMUST00000238135 Ndfip1 protein_coding Interval_131256 chr5 136028714 136028997 + 0 NA intron (ENSMUSG00000004947.15, intron 2 of 5) protein_coding-intron (ENSMUSG00000004947.15, intron 7 of 10) -9641 ENSMUSG00000042985.7 ENSMUSG00000042985 ENSMUST00000062606 Upk3b protein_coding Interval_121628 chr5 4051287 4051851 + 0 NA intron (ENSMUSG00000040407.18, intron 33 of 47) protein_coding-intron (ENSMUSG00000040407.18, intron 33 of 47) -22002 ENSMUSG00000106535.1 ENSMUSG00000106535 ENSMUST00000198500 Gm43031 sense_intronic Interval_121999 chr5 13547052 13547860 + 0 NA intron (ENSMUSG00000028883.17, intron 7 of 17) protein_coding-intron (ENSMUSG00000028883.17, intron 6 of 16) -1238 ENSMUSG00000104626.1 ENSMUSG00000104626 ENSMUST00000197552 Gm42675 TEC Interval_7061 chr1 124921409 124922608 + 0 NA Intergenic Intergenic -75969 ENSMUSG00000036815.17 ENSMUSG00000036815 ENSMUST00000187286 Dpp10 protein_coding Interval_59909 chr15 61589396 61589765 + 0 NA intron (ENSMUSG00000116031.1, intron 4 of 4) lincRNA-intron (ENSMUSG00000116031.1, intron 4 of 4) -45397 ENSMUSG00000116109.1 ENSMUSG00000116109 ENSMUST00000229194 Gm49498 lincRNA Interval_34592 chr12 6370666 6371326 + 0 NA Intergenic Intergenic -88660 ENSMUSG00000112591.1 ENSMUSG00000112591 ENSMUST00000219548 Gm4927 processed_pseudogene Interval_80026 chr18 36714111 36714955 + 0 NA Intergenic Intergenic 12205 ENSMUSG00000051439.7 ENSMUSG00000051439 ENSMUST00000237042 Cd14 protein_coding Interval_3131 chr1 53823446 53824557 + 0 NA intron (ENSMUSG00000042807.15, intron 28 of 28) protein_coding-intron (ENSMUSG00000042807.15, intron 28 of 28) -25423 ENSMUSG00000098443.1 ENSMUSG00000098443 ENSMUST00000184834 Mir7681 miRNA Interval_22139 chr11 6577661 6577874 + 0 NA intron (ENSMUSG00000000378.15, intron 2 of 4) protein_coding-intron (ENSMUSG00000000378.15, intron 2 of 9) -15281 ENSMUSG00000000378.15 ENSMUSG00000000378 ENSMUST00000161667 Ccm2 protein_coding Interval_99667 chr2 164064604 164065422 + 0 NA exon (ENSMUSG00000018322.10, exon 3 of 7) protein_coding-exon (ENSMUSG00000018322.10, exon 3 of 7) 702 ENSMUSG00000018322.10 ENSMUSG00000018322 ENSMUST00000109384 Tomm34 protein_coding Interval_170080 chr9 104275080 104276074 + 0 NA Intergenic Intergenic 13472 ENSMUSG00000104040.1 ENSMUSG00000104040 ENSMUST00000192580 Gm37563 TEC Interval_167347 chr9 67644594 67645723 + 0 NA Intergenic Intergenic -55023 ENSMUSG00000111819.1 ENSMUSG00000111819 ENSMUST00000216655 Gm47110 processed_pseudogene Interval_173820 chrX 105079221 105080232 + 0 NA promoter-TSS (ENSMUSG00000031226.13) protein_coding-promoter-TSS (ENSMUSG00000031226.13) -49 ENSMUSG00000031226.13 ENSMUSG00000031226 ENSMUST00000125343 Pbdc1 protein_coding Interval_112043 chr4 33452667 33452965 + 0 NA promoter-TSS (ENSMUSG00000081206.1) processed_pseudogene-promoter-TSS (ENSMUSG00000081206.1) 73 ENSMUSG00000081206.1 ENSMUSG00000081206 ENSMUST00000118608 Gm11935 processed_pseudogene Interval_90539 chr2 31033095 31033677 + 0 NA intron (ENSMUSG00000075415.13, intron 12 of 13) protein_coding-intron (ENSMUSG00000075415.13, intron 13 of 13) 51052 ENSMUSG00000026854.16 ENSMUSG00000026854 ENSMUST00000127776 Usp20 protein_coding Interval_68315 chr16 73007420 73007822 + 0 NA exon (ENSMUSG00000022883.11, exon 1 of 1) protein_coding-exon (ENSMUSG00000022883.11, exon 1 of 1) 31272 ENSMUSG00000022883.11 ENSMUSG00000022883 ENSMUST00000232432 Robo1 protein_coding Interval_54003 chr14 64310990 64311217 + 0 NA intron (ENSMUSG00000054733.9, intron 2 of 5) protein_coding-intron (ENSMUSG00000054733.9, intron 7 of 10) 105845 ENSMUSG00000054733.9 ENSMUSG00000054733 ENSMUST00000209513 Msra protein_coding Interval_159399 chr8 94323776 94324885 + 0 NA promoter-TSS (ENSMUSG00000065512.3) miRNA-promoter-TSS (ENSMUSG00000065512.3) 19 ENSMUSG00000065512.3 ENSMUSG00000065512 ENSMUST00000083578 Mir138-2 miRNA Interval_140973 chr6 123359565 123360649 + 0 NA Intergenic Intergenic 51774 ENSMUSG00000091260.1 ENSMUSG00000091260 ENSMUST00000073948 Vmn2r19 protein_coding Interval_76345 chr17 79295750 79296697 + 0 NA Intergenic Intergenic -38174 ENSMUSG00000117047.1 ENSMUSG00000117047 ENSMUST00000232946 Gm5230 processed_pseudogene Interval_130875 chr5 132911651 132912971 + 0 NA Intergenic Intergenic 110633 ENSMUSG00000088123.1 ENSMUSG00000088123 ENSMUST00000157498 Gm25722 misc_RNA Interval_95723 chr2 115119683 115120292 + 0 NA intron (ENSMUSG00000101448.1, intron 1 of 3) lincRNA-intron (ENSMUSG00000101448.1, intron 1 of 3) -15563 ENSMUSG00000099802.1 ENSMUSG00000099802 ENSMUST00000188427 Gm28493 lincRNA Interval_59387 chr15 52037103 52038008 + 0 NA Intergenic Intergenic -2552 ENSMUSG00000068522.4 ENSMUSG00000068522 ENSMUST00000090025 Aard protein_coding Interval_163738 chr9 25104451 25105387 + 0 NA Intergenic Intergenic -3438 ENSMUSG00000066809.1 ENSMUSG00000066809 ENSMUST00000086236 Gm10180 processed_pseudogene Interval_88559 chr2 6141161 6141635 + 0 NA TTS (ENSMUSG00000102887.1) lincRNA-TTS (ENSMUSG00000102887.1) -7442 ENSMUSG00000082332.2 ENSMUSG00000082332 ENSMUST00000117166 Gm13384 processed_pseudogene Interval_123770 chr5 35387991 35389437 + 0 NA promoter-TSS (ENSMUSG00000055944.3) lincRNA-promoter-TSS (ENSMUSG00000055944.3) -238 ENSMUSG00000055944.3 ENSMUSG00000055944 ENSMUST00000069741 E130018O15Rik lincRNA Interval_71428 chr17 23682569 23685781 + 0 NA promoter-TSS (ENSMUSG00000066720.7) protein_coding-promoter-TSS (ENSMUSG00000066720.7) -149 ENSMUSG00000066720.7 ENSMUSG00000066720 ENSMUST00000085989 Cldn9 protein_coding Interval_114833 chr4 86044976 86046291 + 0 NA intron (ENSMUSG00000066113.16, intron 2 of 3) protein_coding-intron (ENSMUSG00000066113.16, intron 2 of 3) -2139 ENSMUSG00000064687.1 ENSMUSG00000064687 ENSMUST00000082753 Gm25811 snRNA Interval_40388 chr12 104573517 104575474 + 0 NA Intergenic Intergenic 54527 ENSMUSG00000112954.1 ENSMUSG00000112954 ENSMUST00000222329 Gm49732 lincRNA Interval_126043 chr5 77060294 77062055 + 0 NA intron (ENSMUSG00000029248.14, intron 8 of 9) protein_coding-intron (ENSMUSG00000029248.14, intron 8 of 8) 24120 ENSMUSG00000029248.14 ENSMUSG00000029248 ENSMUST00000118941 Thegl protein_coding Interval_110643 chr4 5672212 5672408 + 0 NA intron (ENSMUSG00000049119.14, intron 1 of 1) protein_coding-intron (ENSMUSG00000049119.14, intron 1 of 2) 15492 ENSMUSG00000077392.1 ENSMUSG00000077392 ENSMUST00000104204 Gm24337 snoRNA Interval_110021 chr3 152550395 152551661 + 0 NA intron (ENSMUSG00000039058.11, intron 6 of 13) protein_coding-intron (ENSMUSG00000039058.11, intron 6 of 13) -24276 ENSMUSG00000039058.11 ENSMUSG00000039058 ENSMUST00000198552 Ak5 protein_coding Interval_58301 chr15 32033032 32033232 + 0 NA Intergenic Intergenic -16819 ENSMUSG00000115561.1 ENSMUSG00000115561 ENSMUST00000227417 Gm49285 TEC Interval_135399 chr6 39066943 39067613 + 0 NA intron (ENSMUSG00000100121.1, intron 1 of 3) protein_coding-intron (ENSMUSG00000029925.13, intron 9 of 12) 320 ENSMUSG00000100121.1 ENSMUSG00000100121 ENSMUST00000186189 1700025N23Rik antisense Interval_346 chr1 4396619 4397017 + 0 NA intron (ENSMUSG00000025900.13, intron 1 of 3) protein_coding-intron (ENSMUSG00000025900.13, intron 1 of 29) 12423 ENSMUSG00000025900.13 ENSMUSG00000025900 ENSMUST00000027032 Rp1 protein_coding Interval_65637 chr16 24466286 24467036 + 0 NA intron (ENSMUSG00000033306.15, intron 3 of 6) protein_coding-intron (ENSMUSG00000033306.15, intron 3 of 12) -60244 ENSMUSG00000087861.1 ENSMUSG00000087861 ENSMUST00000157236 Gm24440 snRNA Interval_76064 chr17 74663421 74663859 + 0 NA intron (ENSMUSG00000024073.16, intron 6 of 17) protein_coding-intron (ENSMUSG00000024073.16, intron 62 of 72) 27918 ENSMUSG00000024073.16 ENSMUSG00000024073 ENSMUST00000182157 Birc6 protein_coding Interval_166378 chr9 58746928 58748833 + 0 NA Intergenic Intergenic -51869 ENSMUSG00000093473.1 ENSMUSG00000093473 ENSMUST00000177528 Gm20620 processed_pseudogene Interval_64246 chr16 9751172 9751606 + 0 NA intron (ENSMUSG00000059003.12, intron 4 of 13) protein_coding-intron (ENSMUSG00000059003.12, intron 2 of 11) 243534 ENSMUSG00000059003.12 ENSMUSG00000059003 ENSMUST00000197242 Grin2a protein_coding Interval_71758 chr17 25902945 25903412 + 0 NA TTS (ENSMUSG00000057580.4) transcribed_processed_pseudogene-TTS (ENSMUSG00000057580.4) 1322 ENSMUSG00000057580.4 ENSMUSG00000057580 ENSMUST00000078252 Cox7c-ps1 transcribed_processed_pseudogene Interval_35567 chr12 24872759 24873272 + 0 NA intron (ENSMUSG00000020646.17, intron 1 of 9) protein_coding-intron (ENSMUSG00000020646.17, intron 1 of 9) 41384 ENSMUSG00000020646.17 ENSMUSG00000020646 ENSMUST00000222994 Mboat2 protein_coding Interval_164113 chr9 31583078 31583532 + 0 NA Intergenic Intergenic -15059 ENSMUSG00000110952.1 ENSMUSG00000110952 ENSMUST00000215261 Gm18226 processed_pseudogene Interval_133808 chr6 12543984 12544226 + 0 NA intron (ENSMUSG00000032625.14, intron 2 of 27) protein_coding-intron (ENSMUSG00000032625.14, intron 1 of 5) -21413 ENSMUSG00000083794.1 ENSMUSG00000083794 ENSMUST00000118647 Gm16123 processed_pseudogene Interval_13348 chr10 16425238 16425459 + 0 NA promoter-TSS (ENSMUSG00000112123.1) processed_pseudogene-promoter-TSS (ENSMUSG00000112123.1) -278 ENSMUSG00000112123.1 ENSMUSG00000112123 ENSMUST00000219380 Gm5178 processed_pseudogene Interval_90014 chr2 27338682 27338893 + 0 NA intron (ENSMUSG00000009621.18, intron 1 of 29) protein_coding-intron (ENSMUSG00000009621.18, intron 2 of 27) 12083 ENSMUSG00000086669.1 ENSMUSG00000086669 ENSMUST00000156020 AA645442 antisense Interval_55945 chr14 103065374 103065827 + 0 NA Intergenic Intergenic -6130 ENSMUSG00000022125.7 ENSMUSG00000022125 ENSMUST00000227117 Cln5 protein_coding Interval_37606 chr12 70254795 70255376 + 0 NA exon (ENSMUSG00000021071.17, exon 9 of 14) protein_coding-exon (ENSMUSG00000021071.17, exon 9 of 14) 2042 ENSMUSG00000021071.17 ENSMUSG00000021071 ENSMUST00000220557 Trim9 protein_coding Interval_4712 chr1 77493934 77494185 + 0 NA intron (ENSMUSG00000026235.14, intron 2 of 15) protein_coding-intron (ENSMUSG00000026235.14, intron 3 of 17) 2709 ENSMUSG00000099141.1 ENSMUSG00000099141 ENSMUST00000184495 Mir6352 miRNA Interval_153812 chr8 8919456 8920379 + 0 NA Intergenic Intergenic 12782 ENSMUSG00000109346.1 ENSMUSG00000109346 ENSMUST00000209045 Gm44515 lincRNA Interval_120146 chr4 143021055 143021783 + 0 NA intron (ENSMUSG00000110067.2, intron 1 of 1) protein_coding-intron (ENSMUSG00000110067.2, intron 1 of 2) 52347 ENSMUSG00000110067.2 ENSMUSG00000110067 ENSMUST00000238915 6330411D24Rik protein_coding Interval_20170 chr10 115382736 115383324 + 0 NA TTS (ENSMUSG00000020137.5) protein_coding-TTS (ENSMUSG00000020137.5) 1413 ENSMUSG00000020137.5 ENSMUSG00000020137 ENSMUST00000218989 Thap2 protein_coding Interval_107385 chr3 107148967 107149256 + 0 NA Intergenic Intergenic -34033 ENSMUSG00000042861.7 ENSMUSG00000042861 ENSMUST00000169751 Kcna10 protein_coding Interval_150673 chr7 113238056 113238826 + 0 NA intron (ENSMUSG00000055116.8, intron 2 of 16) protein_coding-intron (ENSMUSG00000055116.8, intron 2 of 19) 3818 ENSMUSG00000055116.8 ENSMUSG00000055116 ENSMUST00000211547 Arntl protein_coding Interval_164395 chr9 36737175 36737572 + 0 NA intron (ENSMUSG00000032116.18, intron 15 of 17) protein_coding-intron (ENSMUSG00000032116.18, intron 15 of 17) -14628 ENSMUSG00000032113.16 ENSMUSG00000032113 ENSMUST00000172742 Chek1 protein_coding Interval_138112 chr6 85255640 85255903 + 0 NA intron (ENSMUSG00000033720.12, intron 2 of 4) protein_coding-intron (ENSMUSG00000033720.12, intron 10 of 13) 62252 ENSMUSG00000033726.8 ENSMUSG00000033726 ENSMUST00000173919 Emx1 protein_coding Interval_74705 chr17 56074456 56075221 + 0 NA promoter-TSS (ENSMUSG00000019578.11) protein_coding-promoter-TSS (ENSMUSG00000019578.11) -2398 ENSMUSG00000019578.11 ENSMUSG00000019578 ENSMUST00000139371 Ubxn6 protein_coding Interval_154611 chr8 22054954 22055299 + 0 NA intron (ENSMUSG00000006567.11, intron 1 of 21) protein_coding-intron (ENSMUSG00000006567.11, intron 1 of 20) 4893 ENSMUSG00000006567.11 ENSMUSG00000006567 ENSMUST00000110738 Atp7b protein_coding Interval_138978 chr6 93968243 93968557 + 0 NA intron (ENSMUSG00000045095.16, intron 1 of 24) protein_coding-intron (ENSMUSG00000045095.16, intron 1 of 21) -55896 ENSMUSG00000045095.16 ENSMUSG00000045095 ENSMUST00000203034 Magi1 protein_coding Interval_59392 chr15 52070663 52070903 + 0 NA Intergenic Intergenic -18525 ENSMUSG00000115457.1 ENSMUSG00000115457 ENSMUST00000227885 Gm2387 processed_pseudogene Interval_131496 chr5 137568583 137569898 + 0 NA promoter-TSS (ENSMUSG00000029716.13) protein_coding-promoter-TSS (ENSMUSG00000029716.13) -624 ENSMUSG00000029716.13 ENSMUSG00000029716 ENSMUST00000199069 Tfr2 protein_coding Interval_104108 chr3 58655193 58655954 + 0 NA Intergenic Intergenic 3520 ENSMUSG00000105021.1 ENSMUSG00000105021 ENSMUST00000198523 Gm8234 processed_pseudogene Interval_70187 chr17 6035573 6036444 + 0 NA intron (ENSMUSG00000023805.17, intron 22 of 22) protein_coding-intron (ENSMUSG00000023805.17, intron 25 of 25) 14047 ENSMUSG00000015659.12 ENSMUSG00000015659 ENSMUST00000139542 Serac1 protein_coding Interval_25563 chr11 49778059 49779016 + 0 NA Intergenic Intergenic 2038 ENSMUSG00000081934.1 ENSMUSG00000081934 ENSMUST00000117250 Gm12193 processed_pseudogene Interval_139127 chr6 95657368 95658767 + 0 NA promoter-TSS (ENSMUSG00000061838.7) protein_coding-promoter-TSS (ENSMUSG00000061838.7) -599 ENSMUSG00000061838.7 ENSMUSG00000061838 ENSMUST00000203109 Suclg2 protein_coding Interval_33007 chr11 113638531 113638978 + 0 NA intron (ENSMUSG00000041654.15, intron 1 of 3) protein_coding-intron (ENSMUSG00000041654.15, intron 1 of 2) 19412 ENSMUSG00000047904.6 ENSMUSG00000047904 ENSMUST00000067591 Sstr2 protein_coding Interval_122258 chr5 20741100 20741960 + 0 NA Intergenic Intergenic 13136 ENSMUSG00000105036.1 ENSMUSG00000105036 ENSMUST00000200372 1110060G06Rik TEC Interval_99679 chr2 164149761 164151018 + 0 NA intron (ENSMUSG00000018209.15, intron 2 of 2) protein_coding-intron (ENSMUSG00000018209.15, intron 10 of 10) 7132 ENSMUSG00000084446.1 ENSMUSG00000084446 ENSMUST00000122497 n-R5s207 rRNA Interval_30942 chr11 97328080 97328641 + 0 NA intron (ENSMUSG00000018882.12, intron 7 of 7) protein_coding-intron (ENSMUSG00000018882.12, intron 7 of 7) -5871 ENSMUSG00000081958.1 ENSMUSG00000081958 ENSMUST00000122313 Gm11594 processed_pseudogene Interval_122177 chr5 18879995 18880236 + 0 NA Intergenic Intergenic 15538 ENSMUSG00000089364.1 ENSMUSG00000089364 ENSMUST00000158739 Gm23822 snoRNA Interval_98568 chr2 153298676 153299113 + 0 NA intron (ENSMUSG00000027475.9, intron 1 of 8) protein_coding-intron (ENSMUSG00000027475.9, intron 1 of 8) 7481 ENSMUSG00000027475.9 ENSMUSG00000027475 ENSMUST00000028977 Kif3b protein_coding Interval_77905 chr18 5327101 5327794 + 0 NA intron (ENSMUSG00000050945.8, intron 1 of 4) protein_coding-intron (ENSMUSG00000050945.8, intron 1 of 4) 6966 ENSMUSG00000050945.8 ENSMUSG00000050945 ENSMUST00000234411 Zfp438 protein_coding Interval_64093 chr16 7927966 7928324 + 0 NA Intergenic Intergenic 58043 ENSMUSG00000116450.1 ENSMUSG00000116450 ENSMUST00000230593 Gm49534 lincRNA Interval_42175 chr13 9547616 9548547 + 0 NA intron (ENSMUSG00000048264.16, intron 5 of 36) protein_coding-intron (ENSMUSG00000048264.16, intron 5 of 38) -9780 ENSMUSG00000113905.1 ENSMUSG00000113905 ENSMUST00000221729 Gm48872 TEC Interval_35173 chr12 17767158 17767900 + 0 NA intron (ENSMUSG00000071379.2, intron 2 of 4) protein_coding-intron (ENSMUSG00000071379.2, intron 1 of 3) 39303 ENSMUSG00000071379.2 ENSMUSG00000071379 ENSMUST00000222944 Hpcal1 protein_coding Interval_80791 chr18 47095636 47096075 + 0 NA intron (ENSMUSG00000042705.9, intron 5 of 6) protein_coding-intron (ENSMUSG00000042705.9, intron 5 of 6) -16284 ENSMUSG00000117621.1 ENSMUSG00000117621 ENSMUST00000234633 Hspe1-rs1 protein_coding Interval_98220 chr2 150043360 150044030 + 0 NA Intergenic Intergenic 67881 ENSMUSG00000083055.1 ENSMUSG00000083055 ENSMUST00000119999 Gm14140 processed_pseudogene Interval_14544 chr10 35172219 35172455 + 0 NA Intergenic Intergenic 30024 ENSMUSG00000111216.1 ENSMUSG00000111216 ENSMUST00000216575 Gm47044 processed_pseudogene Interval_118016 chr4 128152162 128152480 + 0 NA intron (ENSMUSG00000087459.8, intron 2 of 4) protein_coding-intron (ENSMUSG00000028804.20, intron 3 of 12) 14646 ENSMUSG00000087459.8 ENSMUSG00000087459 ENSMUST00000179945 Csmd2os antisense Interval_45826 chr13 58384506 58386241 + 0 NA promoter-TSS (ENSMUSG00000021550.6) protein_coding-promoter-TSS (ENSMUSG00000021550.6) -148 ENSMUSG00000021550.6 ENSMUSG00000021550 ENSMUST00000022032 2210016F16Rik protein_coding Interval_96784 chr2 128211160 128212546 + 0 NA intron (ENSMUSG00000074813.14, intron 3 of 3) lincRNA-intron (ENSMUSG00000074813.14, intron 2 of 4) 21866 ENSMUSG00000085750.1 ENSMUSG00000085750 ENSMUST00000152439 Gm14009 lincRNA Interval_103235 chr3 37291086 37291387 + 0 NA Intergenic Intergenic 21210 ENSMUSG00000045031.18 ENSMUSG00000045031 ENSMUST00000125252 Cetn4 protein_coding Interval_131271 chr5 136095362 136096611 + 0 NA TTS (ENSMUSG00000088188.1) snRNA-TTS (ENSMUSG00000088188.1) 445 ENSMUSG00000088188.1 ENSMUSG00000088188 ENSMUST00000157563 Gm22214 snRNA Interval_129341 chr5 119301738 119302123 + 0 NA Intergenic Intergenic 4685 ENSMUSG00000084548.1 ENSMUSG00000084548 ENSMUST00000122599 n-R5s175 rRNA Interval_7966 chr1 134909232 134910754 + 0 NA intron (ENSMUSG00000073557.12, intron 1 of 24) protein_coding-intron (ENSMUSG00000073557.12, intron 1 of 23) -52625 ENSMUSG00000026429.9 ENSMUSG00000026429 ENSMUST00000139617 Ube2t protein_coding Interval_74865 chr17 56957630 56958568 + 0 NA promoter-TSS (ENSMUSG00000117245.1) lincRNA-promoter-TSS (ENSMUSG00000117245.1) -221 ENSMUSG00000117245.1 ENSMUSG00000117245 ENSMUST00000232883 Gm49887 lincRNA Interval_166967 chr9 64214254 64215535 + 0 NA intron (ENSMUSG00000004936.8, intron 1 of 10) protein_coding-intron (ENSMUSG00000004936.8, intron 1 of 10) -10629 ENSMUSG00000093239.1 ENSMUSG00000093239 ENSMUST00000175498 Gm24106 miRNA Interval_172991 chrX 60187724 60188281 + 0 NA Intergenic Intergenic -40302 ENSMUSG00000031139.16 ENSMUSG00000031139 ENSMUST00000033478 Mcf2 protein_coding Interval_91422 chr2 38675641 38675974 + 0 NA exon (ENSMUSG00000083722.2, exon 2 of 3) transcribed_unitary_pseudogene-exon (ENSMUSG00000083722.2, exon 2 of 3) 3579 ENSMUSG00000083722.2 ENSMUSG00000083722 ENSMUST00000152645 Adgrd2-ps transcribed_unitary_pseudogene Interval_14218 chr10 29029681 29031135 + 0 NA exon (ENSMUSG00000095478.2, exon 1 of 1) processed_pseudogene-exon (ENSMUSG00000095478.2, exon 1 of 1) 280 ENSMUSG00000095478.2 ENSMUSG00000095478 ENSMUST00000178707 Gm9824 processed_pseudogene Interval_100405 chr2 168853655 168854339 + 0 NA Intergenic Intergenic 28171 ENSMUSG00000077761.1 ENSMUSG00000077761 ENSMUST00000104573 Gm25214 snoRNA Interval_133841 chr6 13212025 13212353 + 0 NA intron (ENSMUSG00000079679.3, intron 3 of 29) protein_coding-intron (ENSMUSG00000079679.3, intron 3 of 11) -35127 ENSMUSG00000079679.3 ENSMUSG00000079679 ENSMUST00000204339 Vwde protein_coding Interval_109905 chr3 150728890 150729096 + 0 NA Intergenic Intergenic 140175 ENSMUSG00000105190.1 ENSMUSG00000105190 ENSMUST00000198573 Gm43470 lincRNA Interval_122184 chr5 19139376 19139677 + 0 NA Intergenic Intergenic 62079 ENSMUSG00000106498.1 ENSMUSG00000106498 ENSMUST00000197967 Gm43032 TEC Interval_144795 chr7 28311417 28312489 + 0 NA promoter-TSS (ENSMUSG00000003438.17) protein_coding-promoter-TSS (ENSMUSG00000003438.17) -2945 ENSMUSG00000109168.1 ENSMUSG00000109168 ENSMUST00000207649 Gm44709 antisense Interval_42124 chr13 8995223 8996823 + 0 NA promoter-TSS (ENSMUSG00000021149.8) protein_coding-promoter-TSS (ENSMUSG00000021149.8) 3018 ENSMUSG00000113731.1 ENSMUSG00000113731 ENSMUST00000223218 Gm48650 processed_pseudogene Interval_68207 chr16 68199040 68199575 + 0 NA Intergenic Intergenic -34452 ENSMUSG00000116638.1 ENSMUSG00000116638 ENSMUST00000232077 Gm49650 processed_pseudogene Interval_123260 chr5 30949549 30950479 + 0 NA promoter-TSS (ENSMUSG00000006638.15) polymorphic_pseudogene-promoter-TSS (ENSMUSG00000006638.15) -52 ENSMUSG00000006638.15 ENSMUSG00000006638 ENSMUST00000006814 Abhd1 polymorphic_pseudogene Interval_86713 chr19 42889660 42890021 + 0 NA intron (ENSMUSG00000074852.4, intron 9 of 11) protein_coding-intron (ENSMUSG00000074852.4, intron 9 of 11) 110730 ENSMUSG00000090235.1 ENSMUSG00000090235 ENSMUST00000160001 Gm16244 processed_transcript Interval_138759 chr6 91670046 91670963 + 0 NA Intergenic Intergenic 8719 ENSMUSG00000108751.1 ENSMUSG00000108751 ENSMUST00000206576 Gm45217 TEC Interval_2633 chr1 42694638 42698825 + 0 NA exon (ENSMUSG00000045515.4, exon 1 of 1) protein_coding-exon (ENSMUSG00000045515.4, exon 1 of 1) 1806 ENSMUSG00000093436.6 ENSMUSG00000093436 ENSMUST00000176807 Gm20646 sense_overlapping Interval_70961 chr17 16847906 16848936 + 0 NA TTS (ENSMUSG00000116958.1) processed_pseudogene-TTS (ENSMUSG00000116958.1) 1026 ENSMUSG00000116958.1 ENSMUSG00000116958 ENSMUST00000231260 Gm6705 processed_pseudogene Interval_134348 chr6 25988185 25988834 + 0 NA Intergenic Intergenic -11428 ENSMUSG00000107127.1 ENSMUSG00000107127 ENSMUST00000202067 Gm6719 processed_pseudogene Interval_35551 chr12 24736982 24737402 + 0 NA Intergenic Intergenic -23033 ENSMUSG00000113062.1 ENSMUSG00000113062 ENSMUST00000221016 Gm48895 processed_pseudogene Interval_126385 chr5 87772109 87772974 + 0 NA Intergenic Intergenic -7740 ENSMUSG00000095333.1 ENSMUSG00000095333 ENSMUST00000158274 Gm24314 snoRNA Interval_19933 chr10 111358280 111358563 + 0 NA Intergenic Intergenic 21297 ENSMUSG00000112246.1 ENSMUSG00000112246 ENSMUST00000219123 Gm40761 lincRNA Interval_61059 chr15 79001730 79002359 + 0 NA promoter-TSS (ENSMUSG00000033088.19) protein_coding-promoter-TSS (ENSMUSG00000033088.19) -179 ENSMUSG00000099180.1 ENSMUSG00000099180 ENSMUST00000183598 Mir6956 miRNA Interval_171138 chr9 114716816 114717559 + 0 NA intron (ENSMUSG00000032435.9, intron 8 of 12) protein_coding-intron (ENSMUSG00000032435.9, intron 8 of 12) -13929 ENSMUSG00000032434.9 ENSMUSG00000032434 ENSMUST00000035007 Cmtm6 protein_coding Interval_29761 chr11 86634228 86634747 + 0 NA intron (ENSMUSG00000018171.9, intron 7 of 11) protein_coding-intron (ENSMUSG00000018171.9, intron 7 of 11) -3461 ENSMUSG00000083992.1 ENSMUSG00000083992 ENSMUST00000117851 Gm11478 processed_pseudogene Interval_157453 chr8 70476487 70478022 + 0 NA promoter-TSS (ENSMUSG00000055707.13) protein_coding-promoter-TSS (ENSMUSG00000055707.13) -305 ENSMUSG00000055707.13 ENSMUSG00000055707 ENSMUST00000209567 Klhl26 protein_coding Interval_126695 chr5 92103087 92103799 + 0 NA Intergenic Intergenic 14840 ENSMUSG00000088949.1 ENSMUSG00000088949 ENSMUST00000158324 Gm24931 rRNA Interval_83134 chr18 81927373 81928824 + 0 NA Intergenic Intergenic -5809 ENSMUSG00000117923.1 ENSMUSG00000117923 ENSMUST00000236553 Gm30593 lincRNA Interval_92748 chr2 65043414 65043654 + 0 NA Intergenic Intergenic -67765 ENSMUSG00000026888.14 ENSMUSG00000026888 ENSMUST00000146807 Grb14 protein_coding Interval_52513 chr14 47224893 47225151 + 0 NA Intergenic Intergenic -10284 ENSMUSG00000115400.1 ENSMUSG00000115400 ENSMUST00000228694 Gm49137 processed_pseudogene Interval_163583 chr9 22339567 22339966 + 0 NA intron (ENSMUSG00000036777.8, intron 1 of 3) protein_coding-intron (ENSMUSG00000036777.8, intron 20 of 23) -9266 ENSMUSG00000110759.1 ENSMUSG00000110759 ENSMUST00000215035 Gm6607 processed_pseudogene Interval_119082 chr4 135411761 135412213 + 0 NA TTS (ENSMUSG00000059713.12) protein_coding-TTS (ENSMUSG00000059713.12) 4646 ENSMUSG00000076123.1 ENSMUSG00000076123 ENSMUST00000102169 Mir700 miRNA Interval_63253 chr15 99945956 99946212 + 0 NA exon (ENSMUSG00000045350.15, exon 4 of 8) protein_coding-exon (ENSMUSG00000045350.15, exon 4 of 8) -8643 ENSMUSG00000077443.1 ENSMUSG00000077443 ENSMUST00000104255 Gm23133 snRNA Interval_2757 chr1 44229193 44229684 + 0 NA Intergenic Intergenic -10525 ENSMUSG00000046828.3 ENSMUSG00000046828 ENSMUST00000150062 Mettl21e protein_coding Interval_63303 chr15 100210050 100211073 + 0 NA intron (ENSMUSG00000023026.16, intron 36 of 37) protein_coding-intron (ENSMUSG00000023026.16, intron 31 of 32) -15250 ENSMUSG00000116366.1 ENSMUSG00000116366 ENSMUST00000229080 Gm49475 antisense Interval_27998 chr11 72066252 72067218 + 0 NA intron (ENSMUSG00000040543.16, intron 9 of 18) protein_coding-intron (ENSMUSG00000040543.16, intron 10 of 19) 24211 ENSMUSG00000020808.3 ENSMUSG00000020808 ENSMUST00000125655 Pimreg protein_coding Interval_90883 chr2 33200185 33201312 + 0 NA intron (ENSMUSG00000038831.16, intron 8 of 17) protein_coding-intron (ENSMUSG00000038831.16, intron 7 of 16) 11193 ENSMUSG00000088836.1 ENSMUSG00000088836 ENSMUST00000158211 Gm23546 snoRNA Interval_28472 chr11 76216810 76218151 + 0 NA promoter-TSS (ENSMUSG00000038057.4) protein_coding-promoter-TSS (ENSMUSG00000038057.4) 37 ENSMUSG00000049396.6 ENSMUSG00000049396 ENSMUST00000143822 Gemin4 protein_coding Interval_168576 chr9 83719485 83719935 + 0 NA Intergenic Intergenic 28235 ENSMUSG00000100155.1 ENSMUSG00000100155 ENSMUST00000189326 Gm2109 lincRNA Interval_45588 chr13 56095884 56096157 + 0 NA intron (ENSMUSG00000015937.15, intron 5 of 5) protein_coding-intron (ENSMUSG00000015937.15, intron 5 of 8) 40341 ENSMUSG00000015937.15 ENSMUSG00000015937 ENSMUST00000154564 Macroh2a1 protein_coding Interval_46866 chr13 72852567 72853822 + 0 NA Intergenic Intergenic -36431 ENSMUSG00000113082.1 ENSMUSG00000113082 ENSMUST00000223149 D730050B12Rik lincRNA Interval_169614 chr9 99449675 99451692 + 0 NA promoter-TSS (ENSMUSG00000046242.8) protein_coding-promoter-TSS (ENSMUSG00000046242.8) -792 ENSMUSG00000046242.8 ENSMUSG00000046242 ENSMUST00000056103 Nme9 protein_coding Interval_111576 chr4 23656433 23657969 + 0 NA Intergenic Intergenic 3143 ENSMUSG00000084179.1 ENSMUSG00000084179 ENSMUST00000119585 Gm11890 processed_pseudogene Interval_91521 chr2 40729387 40729957 + 0 NA intron (ENSMUSG00000049252.17, intron 69 of 90) protein_coding-intron (ENSMUSG00000049252.17, intron 69 of 90) -131129 ENSMUSG00000098953.1 ENSMUSG00000098953 ENSMUST00000184511 Gm27348 misc_RNA Interval_57109 chr15 6570658 6571432 + 0 NA intron (ENSMUSG00000022148.16, intron 1 of 1) protein_coding-intron (ENSMUSG00000022148.16, intron 1 of 1) 1518 ENSMUSG00000022148.16 ENSMUSG00000022148 ENSMUST00000161947 Fyb protein_coding Interval_161755 chr8 122567017 122568523 + 0 NA promoter-TSS (ENSMUSG00000006585.3) protein_coding-promoter-TSS (ENSMUSG00000006585.3) -256 ENSMUSG00000006585.3 ENSMUSG00000006585 ENSMUST00000212821 Cdt1 protein_coding Interval_50573 chr14 15797058 15797617 + 0 NA TTS (ENSMUSG00000114794.1) lincRNA-TTS (ENSMUSG00000114794.1) 23648 ENSMUSG00000114586.1 ENSMUSG00000114586 ENSMUST00000225565 Gm31804 lincRNA Interval_52451 chr14 46565051 46565434 + 0 NA intron (ENSMUSG00000085380.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000085380.1, intron 1 of 1) 8939 ENSMUSG00000085380.1 ENSMUSG00000085380 ENSMUST00000129910 E130120K24Rik lincRNA Interval_38786 chr12 82339316 82340108 + 0 NA intron (ENSMUSG00000042700.16, intron 2 of 21) protein_coding-intron (ENSMUSG00000042700.16, intron 1 of 20) 156825 ENSMUSG00000094374.2 ENSMUSG00000094374 ENSMUST00000179295 Gm5435 processed_pseudogene Interval_53475 chr14 57730544 57730967 + 0 NA intron (ENSMUSG00000021959.16, intron 2 of 8) protein_coding-intron (ENSMUSG00000021959.16, intron 2 of 7) 15348 ENSMUSG00000114942.1 ENSMUSG00000114942 ENSMUST00000174694 Gm49361 protein_coding Interval_123085 chr5 29515045 29515244 + 0 NA Intergenic Intergenic -23009 ENSMUSG00000078182.4 ENSMUSG00000078182 ENSMUST00000075518 Gm6083 processed_pseudogene Interval_134255 chr6 23829537 23831712 + 0 NA intron (ENSMUSG00000017978.18, intron 2 of 29) protein_coding-intron (ENSMUSG00000017978.18, intron 1 of 29) 8513 ENSMUSG00000017978.18 ENSMUSG00000017978 ENSMUST00000115355 Cadps2 protein_coding Interval_167585 chr9 70776483 70777188 + 0 NA intron (ENSMUSG00000054693.14, intron 1 of 1) protein_coding-intron (ENSMUSG00000054693.14, intron 15 of 15) 782 ENSMUSG00000054693.14 ENSMUSG00000054693 ENSMUST00000145377 Adam10 protein_coding Interval_118133 chr4 129134721 129135050 + 0 NA promoter-TSS (ENSMUSG00000087416.1) lincRNA-promoter-TSS (ENSMUSG00000087416.1) -206 ENSMUSG00000087416.1 ENSMUSG00000087416 ENSMUST00000124746 Gm15906 lincRNA Interval_45775 chr13 58001150 58002859 + 0 NA exon (ENSMUSG00000014164.15, exon 17 of 17) protein_coding-exon (ENSMUSG00000014164.15, exon 17 of 17) 21196 ENSMUSG00000077962.1 ENSMUSG00000077962 ENSMUST00000104769 Mir874 miRNA Interval_136004 chr6 49382836 49383518 + 0 NA intron (ENSMUSG00000047115.15, intron 5 of 5) protein_coding-intron (ENSMUSG00000047115.15, intron 5 of 6) -4302 ENSMUSG00000047115.15 ENSMUSG00000047115 ENSMUST00000203182 Fam221a protein_coding Interval_151709 chr7 126189953 126191869 + 0 NA intron (ENSMUSG00000000131.15, intron 1 of 8) protein_coding-intron (ENSMUSG00000000131.15, intron 1 of 23) -3803 ENSMUSG00000000131.15 ENSMUSG00000000131 ENSMUST00000206784 Xpo6 protein_coding Interval_91774 chr2 49471414 49472997 + 0 NA intron (ENSMUSG00000069495.12, intron 1 of 13) protein_coding-intron (ENSMUSG00000069495.12, intron 1 of 13) -56670 ENSMUSG00000069495.12 ENSMUSG00000069495 ENSMUST00000152485 Epc2 protein_coding Interval_47588 chr13 89619071 89619277 + 0 NA Intergenic Intergenic 34663 ENSMUSG00000021613.9 ENSMUSG00000021613 ENSMUST00000225678 Hapln1 protein_coding Interval_146208 chr7 44697078 44698014 + 0 NA Intergenic Intergenic -11196 ENSMUSG00000066500.5 ENSMUSG00000066500 ENSMUST00000207182 Izumo2 protein_coding Interval_145733 chr7 37918673 37919449 + 0 NA Intergenic Intergenic -94714 ENSMUSG00000064591.1 ENSMUSG00000064591 ENSMUST00000082657 Gm22302 snRNA Interval_85677 chr19 29609410 29609787 + 0 NA TTS (ENSMUSG00000046324.12) protein_coding-TTS (ENSMUSG00000046324.12) 36429 ENSMUSG00000046324.12 ENSMUSG00000046324 ENSMUST00000160907 Ermp1 protein_coding Interval_171368 chr9 117110108 117110507 + 0 NA intron (ENSMUSG00000039607.17, intron 1 of 13) protein_coding-intron (ENSMUSG00000039607.17, intron 1 of 12) 44780 ENSMUSG00000092516.1 ENSMUSG00000092516 ENSMUST00000174520 Gm20397 processed_pseudogene Interval_129434 chr5 120153621 120153876 + 0 NA intron (ENSMUSG00000029594.12, intron 21 of 23) protein_coding-intron (ENSMUSG00000029594.12, intron 21 of 23) -14485 ENSMUSG00000097368.2 ENSMUSG00000097368 ENSMUST00000181905 Gm10390 antisense Interval_75941 chr17 73296984 73297183 + 0 NA Intergenic Intergenic 44538 ENSMUSG00000117292.1 ENSMUSG00000117292 ENSMUST00000233479 E330032C10Rik lincRNA Interval_93457 chr2 73184363 73184759 + 0 NA intron (ENSMUSG00000027108.15, intron 3 of 9) protein_coding-intron (ENSMUSG00000027108.15, intron 4 of 10) 7950 ENSMUSG00000083976.1 ENSMUSG00000083976 ENSMUST00000117304 Gm13664 processed_pseudogene Interval_6818 chr1 119861459 119861693 + 0 NA Intergenic Intergenic -13205 ENSMUSG00000100042.1 ENSMUSG00000100042 ENSMUST00000185404 Gm29658 processed_pseudogene Interval_65561 chr16 23325341 23325901 + 0 NA intron (ENSMUSG00000022885.16, intron 4 of 7) protein_coding-intron (ENSMUSG00000022885.16, intron 4 of 7) 98114 ENSMUSG00000084439.1 ENSMUSG00000084439 ENSMUST00000122490 Gm23430 misc_RNA Interval_14785 chr10 39838883 39839100 + 0 NA intron (ENSMUSG00000019841.15, intron 20 of 32) protein_coding-intron (ENSMUSG00000019841.15, intron 19 of 31) 60178 ENSMUSG00000096687.8 ENSMUSG00000096687 ENSMUST00000239084 Mfsd4b4 protein_coding Interval_64312 chr16 10411256 10412557 + 0 NA promoter-TSS (ENSMUSG00000022503.10) protein_coding-promoter-TSS (ENSMUSG00000022503.10) -158 ENSMUSG00000022503.10 ENSMUSG00000022503 ENSMUST00000143617 Nubp1 protein_coding Interval_75475 chr17 67047624 67047986 + 0 NA intron (ENSMUSG00000033278.10, intron 5 of 19) protein_coding-intron (ENSMUSG00000033278.10, intron 5 of 32) -21570 ENSMUSG00000093508.1 ENSMUSG00000093508 ENSMUST00000176783 Mir5709 miRNA Interval_100862 chr2 172973878 172974362 + 0 NA Intergenic Intergenic -11757 ENSMUSG00000005883.15 ENSMUSG00000005883 ENSMUST00000156471 Spo11 protein_coding Interval_147320 chr7 65821849 65823586 + 0 NA Intergenic Intergenic 19606 ENSMUSG00000100094.1 ENSMUSG00000100094 ENSMUST00000185464 1810008I18Rik lincRNA Interval_649 chr1 9544944 9546516 + 0 NA exon (ENSMUSG00000061024.8, exon 1 of 1) protein_coding-exon (ENSMUSG00000061024.8, exon 1 of 1) 322 ENSMUSG00000061024.8 ENSMUSG00000061024 ENSMUST00000072079 Rrs1 protein_coding Interval_40957 chr12 110245454 110245653 + 0 NA Intergenic Intergenic 9061 ENSMUSG00000113605.1 ENSMUSG00000113605 ENSMUST00000222054 4930425K24Rik TEC Interval_104359 chr3 64024586 64024829 + 0 NA Intergenic Intergenic 30903 ENSMUSG00000090303.3 ENSMUSG00000090303 ENSMUST00000176077 Vmn2r-ps3 unprocessed_pseudogene Interval_123903 chr5 36397508 36399273 + 0 NA promoter-TSS (ENSMUSG00000029093.14) protein_coding-promoter-TSS (ENSMUSG00000029093.14) -32472 ENSMUSG00000029093.14 ENSMUSG00000029093 ENSMUST00000141508 Sorcs2 protein_coding Interval_42470 chr13 13850089 13850535 + 0 NA Intergenic Intergenic 8070 ENSMUSG00000113493.1 ENSMUSG00000113493 ENSMUST00000220697 Gm7441 processed_pseudogene Interval_58050 chr15 27459779 27460087 + 0 NA TTS (ENSMUSG00000115138.1) lincRNA-TTS (ENSMUSG00000115138.1) 3516 ENSMUSG00000115138.1 ENSMUSG00000115138 ENSMUST00000227384 Gm36899 lincRNA Interval_72453 chr17 29886670 29889915 + 0 NA promoter-TSS (ENSMUSG00000043557.16) protein_coding-promoter-TSS (ENSMUSG00000043557.16) -1792 ENSMUSG00000086534.2 ENSMUSG00000086534 ENSMUST00000149552 Gm16758 antisense Interval_151310 chr7 120901714 120902113 + 0 NA intron (ENSMUSG00000035064.17, intron 5 of 5) protein_coding-intron (ENSMUSG00000035064.17, intron 17 of 17) 11208 ENSMUSG00000109337.1 ENSMUSG00000109337 ENSMUST00000207651 Gm45047 TEC Interval_112898 chr4 45879096 45879574 + 0 NA exon (ENSMUSG00000028327.14, exon 1 of 7) protein_coding-exon (ENSMUSG00000028327.14, exon 1 of 7) 5124 ENSMUSG00000028327.14 ENSMUSG00000028327 ENSMUST00000165478 Stra6l protein_coding Interval_83352 chr18 84519332 84519893 + 0 NA intron (ENSMUSG00000048410.17, intron 2 of 2) protein_coding-intron (ENSMUSG00000048410.17, intron 2 of 2) -84677 ENSMUSG00000048410.17 ENSMUSG00000048410 ENSMUST00000182297 Zfp407 protein_coding Interval_57810 chr15 21176851 21177409 + 0 NA intron (ENSMUSG00000040452.9, intron 2 of 12) protein_coding-intron (ENSMUSG00000040452.9, intron 1 of 11) -3027 ENSMUSG00000103296.1 ENSMUSG00000103296 ENSMUST00000195204 Gm38234 TEC Interval_150820 chr7 115014347 115014773 + 0 NA Intergenic Intergenic -50433 ENSMUSG00000108722.1 ENSMUSG00000108722 ENSMUST00000205978 Gm34225 lincRNA Interval_139021 chr6 94236905 94237117 + 0 NA intron (ENSMUSG00000045095.16, intron 2 of 2) protein_coding-intron (ENSMUSG00000045095.16, intron 1 of 21) 87023 ENSMUSG00000107545.1 ENSMUSG00000107545 ENSMUST00000204466 Gm44307 processed_pseudogene Interval_45564 chr13 55909786 55910026 + 0 NA intron (ENSMUSG00000114493.2, intron 2 of 5) antisense-intron (ENSMUSG00000114493.2, intron 2 of 5) -73714 ENSMUSG00000021506.7 ENSMUSG00000021506 ENSMUST00000173618 Pitx1 protein_coding Interval_137465 chr6 72622679 72624038 + 0 NA Intergenic Intergenic -5930 ENSMUSG00000072999.9 ENSMUSG00000072999 ENSMUST00000101278 Gm15401 antisense Interval_87160 chr19 46517061 46519042 + 0 NA Intergenic Intergenic 3391 ENSMUSG00000025034.9 ENSMUSG00000025034 ENSMUST00000235934 Trim8 protein_coding Interval_144801 chr7 28338167 28339914 + 0 NA promoter-TSS (ENSMUSG00000003435.9) protein_coding-promoter-TSS (ENSMUSG00000003435.9) -334 ENSMUSG00000003435.9 ENSMUSG00000003435 ENSMUST00000208726 Supt5 protein_coding Interval_145855 chr7 40713781 40714381 + 0 NA Intergenic Intergenic 39344 ENSMUSG00000102004.3 ENSMUSG00000102004 ENSMUST00000207559 4933402C06Rik lincRNA Interval_50082 chr14 7861046 7861538 + 0 NA intron (ENSMUSG00000025278.9, intron 1 of 45) protein_coding-intron (ENSMUSG00000025278.9, intron 1 of 45) -23449 ENSMUSG00000025278.9 ENSMUSG00000025278 ENSMUST00000228206 Flnb protein_coding Interval_137601 chr6 74820569 74820995 + 0 NA Intergenic Intergenic -315618 ENSMUSG00000096282.1 ENSMUSG00000096282 ENSMUST00000179186 Gm22254 miRNA Interval_141981 chr6 136328579 136328893 + 0 NA exon (ENSMUSG00000094973.2, exon 1 of 1) protein_coding-exon (ENSMUSG00000094973.2, exon 1 of 1) 206 ENSMUSG00000094973.2 ENSMUSG00000094973 ENSMUST00000077886 Eif4a3l1 protein_coding Interval_27335 chr11 66601914 66602319 + 0 NA Intergenic Intergenic 38509 ENSMUSG00000080978.2 ENSMUSG00000080978 ENSMUST00000121380 Gm12297 processed_pseudogene Interval_89814 chr2 25621248 25622505 + 0 NA promoter-TSS (ENSMUSG00000026939.12) protein_coding-promoter-TSS (ENSMUSG00000026939.12) 31 ENSMUSG00000026939.12 ENSMUSG00000026939 ENSMUST00000155893 Tmem141 protein_coding Interval_57993 chr15 25900529 25900939 + 0 NA intron (ENSMUSG00000022270.16, intron 3 of 8) protein_coding-intron (ENSMUSG00000022270.16, intron 3 of 8) -9690 ENSMUSG00000022270.16 ENSMUSG00000022270 ENSMUST00000228306 Retreg1 protein_coding Interval_57429 chr15 10713498 10716442 + 0 NA promoter-TSS (ENSMUSG00000022246.14) protein_coding-promoter-TSS (ENSMUSG00000022246.14) 70 ENSMUSG00000096971.2 ENSMUSG00000096971 ENSMUST00000181739 4930556M19Rik processed_transcript Interval_100022 chr2 166574608 166575705 + 0 NA intron (ENSMUSG00000039621.13, intron 6 of 13) protein_coding-intron (ENSMUSG00000039621.13, intron 32 of 39) -65982 ENSMUSG00000085682.2 ENSMUSG00000085682 ENSMUST00000123480 Gm14267 transcribed_processed_pseudogene Interval_153541 chr8 3332071 3332336 + 0 NA Intergenic Intergenic -21234 ENSMUSG00000004568.13 ENSMUSG00000004568 ENSMUST00000145360 Arhgef18 protein_coding Interval_29729 chr11 86440814 86441469 + 0 NA Intergenic Intergenic -3726 ENSMUSG00000064526.1 ENSMUSG00000064526 ENSMUST00000082592 Gm26439 snRNA Interval_141098 chr6 124964700 124965962 + 0 NA promoter-TSS (ENSMUSG00000030127.15) protein_coding-promoter-TSS (ENSMUSG00000030127.15) 181 ENSMUSG00000030127.15 ENSMUSG00000030127 ENSMUST00000149346 Cops7a protein_coding Interval_55795 chr14 100222318 100222487 + 0 NA intron (ENSMUSG00000054391.12, intron 1 of 1) antisense-intron (ENSMUSG00000054391.12, intron 2 of 4) 2916 ENSMUSG00000084991.1 ENSMUSG00000084991 ENSMUST00000155141 Gm16260 processed_pseudogene Interval_148720 chr7 84605527 84606946 + 0 NA promoter-TSS (ENSMUSG00000030630.16) protein_coding-promoter-TSS (ENSMUSG00000030630.16) -332 ENSMUSG00000030630.16 ENSMUSG00000030630 ENSMUST00000134390 Fah protein_coding Interval_43184 chr13 24920448 24920830 + 0 NA intron (ENSMUSG00000035936.6, intron 4 of 9) protein_coding-intron (ENSMUSG00000035936.6, intron 4 of 9) 15019 ENSMUSG00000086796.2 ENSMUSG00000086796 ENSMUST00000225028 4932702P03Rik antisense Interval_151985 chr7 127958895 127959684 + 0 NA Intergenic Intergenic -18843 ENSMUSG00000030795.18 ENSMUSG00000030795 ENSMUST00000079045 Fus protein_coding Interval_161847 chr8 123155171 123157428 + 0 NA TTS (ENSMUSG00000000739.14) protein_coding-TTS (ENSMUSG00000000739.14) 2016 ENSMUSG00000000739.14 ENSMUSG00000000739 ENSMUST00000152722 Sult5a1 protein_coding Interval_57494 chr15 11794769 11795010 + 0 NA Intergenic Intergenic -91186 ENSMUSG00000115585.1 ENSMUSG00000115585 ENSMUST00000228108 Gm41271 processed_transcript Interval_47554 chr13 88274026 88275272 + 0 NA Intergenic Intergenic -89193 ENSMUSG00000098213.1 ENSMUSG00000098213 ENSMUST00000183033 Gm27044 processed_pseudogene Interval_104572 chr3 68379207 68379667 + 0 NA intron (ENSMUSG00000027777.15, intron 1 of 6) protein_coding-intron (ENSMUSG00000027777.15, intron 1 of 7) -28346 ENSMUSG00000103345.1 ENSMUSG00000103345 ENSMUST00000195366 Gm10723 TEC Interval_141656 chr6 132435709 132436019 + 0 NA Intergenic Intergenic 5858 ENSMUSG00000108041.1 ENSMUSG00000108041 ENSMUST00000203971 Gm5154 unprocessed_pseudogene Interval_74826 chr17 56757011 56758539 + 0 NA promoter-TSS (ENSMUSG00000039481.5) protein_coding-promoter-TSS (ENSMUSG00000039481.5) -245 ENSMUSG00000039481.5 ENSMUSG00000039481 ENSMUST00000044752 Nrtn protein_coding Interval_38793 chr12 82384534 82385284 + 0 NA intron (ENSMUSG00000042700.16, intron 7 of 21) protein_coding-intron (ENSMUSG00000042700.16, intron 6 of 20) 111628 ENSMUSG00000094374.2 ENSMUSG00000094374 ENSMUST00000179295 Gm5435 processed_pseudogene Interval_44395 chr13 44600455 44600851 + 0 NA Intergenic Intergenic -21529 ENSMUSG00000113730.1 ENSMUSG00000113730 ENSMUST00000221956 Gm47805 lincRNA Interval_71097 chr17 17953937 17955821 + 0 NA intron (ENSMUSG00000079700.7, intron 1 of 1) protein_coding-intron (ENSMUSG00000079700.7, intron 1 of 1) -15579 ENSMUSG00000079700.7 ENSMUSG00000079700 ENSMUST00000115565 Fpr3 protein_coding Interval_136329 chr6 53130866 53131673 + 0 NA Intergenic Intergenic 40466 ENSMUSG00000108028.1 ENSMUSG00000108028 ENSMUST00000203654 Gm8143 processed_pseudogene Interval_145745 chr7 37992684 37993595 + 0 NA intron (ENSMUSG00000030421.9, intron 2 of 10) protein_coding-intron (ENSMUSG00000030421.9, intron 2 of 10) 30412 ENSMUSG00000030421.9 ENSMUSG00000030421 ENSMUST00000206169 Uri1 protein_coding Interval_95303 chr2 105950349 105950569 + 0 NA intron (ENSMUSG00000042670.5, intron 5 of 6) protein_coding-intron (ENSMUSG00000042670.5, intron 5 of 6) -42298 ENSMUSG00000093363.1 ENSMUSG00000093363 ENSMUST00000175622 Gm22002 miRNA Interval_47875 chr13 94065414 94066586 + 0 NA intron (ENSMUSG00000045312.12, intron 1 of 1) protein_coding-intron (ENSMUSG00000045312.12, intron 1 of 3) 12157 ENSMUSG00000114174.1 ENSMUSG00000114174 ENSMUST00000223240 Cycs-ps3 processed_pseudogene Interval_168042 chr9 75553488 75553833 + 0 NA intron (ENSMUSG00000058587.9, intron 1 of 1) protein_coding-intron (ENSMUSG00000058587.9, intron 1 of 9) 5997 ENSMUSG00000058587.9 ENSMUSG00000058587 ENSMUST00000217459 Tmod3 protein_coding Interval_57896 chr15 25116510 25118242 + 0 NA intron (ENSMUSG00000115174.1, intron 4 of 6) lincRNA-intron (ENSMUSG00000115174.1, intron 4 of 6) 11028 ENSMUSG00000115174.1 ENSMUSG00000115174 ENSMUST00000226274 Gm35996 lincRNA Interval_31636 chr11 101924739 101925037 + 0 NA Intergenic Intergenic -14613 ENSMUSG00000082171.1 ENSMUSG00000082171 ENSMUST00000120378 Rpl27-ps2 processed_pseudogene Interval_70901 chr17 15739398 15739701 + 0 NA exon (ENSMUSG00000023852.14, exon 15 of 36) protein_coding-exon (ENSMUSG00000023852.14, exon 15 of 36) 1014 ENSMUSG00000023852.14 ENSMUSG00000023852 ENSMUST00000173040 Chd1 protein_coding Interval_54492 chr14 70205716 70206984 + 0 NA promoter-TSS (ENSMUSG00000022091.6) protein_coding-promoter-TSS (ENSMUSG00000022091.6) 1026 ENSMUSG00000115186.1 ENSMUSG00000115186 ENSMUST00000226259 Gm49417 antisense Interval_29443 chr11 84044781 84045200 + 0 NA TTS (ENSMUSG00000034940.15) protein_coding-TTS (ENSMUSG00000034940.15) 23589 ENSMUSG00000018648.15 ENSMUSG00000018648 ENSMUST00000138208 Dusp14 protein_coding Interval_74712 chr17 56111923 56112427 + 0 NA exon (ENSMUSG00000011305.11, exon 9 of 9) protein_coding-exon (ENSMUSG00000011305.11, exon 9 of 9) -2372 ENSMUSG00000002831.14 ENSMUSG00000002831 ENSMUST00000190703 Plin4 protein_coding Interval_39051 chr12 84698260 84699145 + 0 NA promoter-TSS (ENSMUSG00000071234.3) protein_coding-promoter-TSS (ENSMUSG00000071234.3) 52 ENSMUSG00000071234.3 ENSMUSG00000071234 ENSMUST00000221793 Syndig1l protein_coding Interval_147204 chr7 64455126 64455372 + 0 NA Intergenic Intergenic -60062 ENSMUSG00000108384.1 ENSMUSG00000108384 ENSMUST00000206082 Gm45082 TEC Interval_60446 chr15 73795451 73795727 + 0 NA intron (ENSMUSG00000072487.11, intron 6 of 29) protein_coding-intron (ENSMUSG00000072487.11, intron 4 of 10) 14307 ENSMUSG00000083380.1 ENSMUSG00000083380 ENSMUST00000120938 Ndufb4c processed_pseudogene Interval_145983 chr7 42851537 42851735 + 0 NA intron (ENSMUSG00000092225.1, intron 1 of 3) protein_coding-intron (ENSMUSG00000092225.1, intron 1 of 3) 15598 ENSMUSG00000092225.1 ENSMUSG00000092225 ENSMUST00000174558 Gm2381 protein_coding Interval_69225 chr16 91495770 91497287 + 0 NA TTS (ENSMUSG00000022967.13) protein_coding-TTS (ENSMUSG00000022967.13) 11212 ENSMUSG00000022967.13 ENSMUSG00000022967 ENSMUST00000232453 Ifnar1 protein_coding Interval_122283 chr5 20935588 20935922 + 0 NA intron (ENSMUSG00000039968.9, intron 1 of 6) protein_coding-intron (ENSMUSG00000039968.9, intron 1 of 7) -13356 ENSMUSG00000039968.9 ENSMUSG00000039968 ENSMUST00000197089 Rsbn1l protein_coding Interval_147264 chr7 65279174 65279620 + 0 NA Intergenic Intergenic -66028 ENSMUSG00000108587.1 ENSMUSG00000108587 ENSMUST00000205499 1810049I09Rik lincRNA Interval_142391 chr6 141425699 141426308 + 0 NA intron (ENSMUSG00000041741.10, intron 2 of 5) protein_coding-intron (ENSMUSG00000041741.10, intron 2 of 15) -16357 ENSMUSG00000108169.1 ENSMUSG00000108169 ENSMUST00000204360 Gm43958 TEC Interval_103253 chr3 37542274 37542950 + 0 NA intron (ENSMUSG00000027722.14, intron 16 of 16) protein_coding-intron (ENSMUSG00000027722.14, intron 15 of 15) 13891 ENSMUSG00000080723.1 ENSMUSG00000080723 ENSMUST00000119860 Gm12564 processed_pseudogene Interval_23416 chr11 22484967 22485161 + 0 NA intron (ENSMUSG00000085021.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000085021.1, intron 1 of 2) 1456 ENSMUSG00000085021.1 ENSMUSG00000085021 ENSMUST00000147771 Gm12051 lincRNA Interval_122155 chr5 18367037 18367319 + 0 NA Intergenic Intergenic -6823 ENSMUSG00000057614.6 ENSMUSG00000057614 ENSMUST00000074694 Gnai1 protein_coding Interval_31583 chr11 101516627 101517556 + 0 NA intron (ENSMUSG00000017146.12, intron 2 of 2) protein_coding-intron (ENSMUSG00000017146.12, intron 12 of 22) 7767 ENSMUSG00000017146.12 ENSMUSG00000017146 ENSMUST00000190862 Brca1 protein_coding Interval_108761 chr3 131109877 131113251 + 0 NA exon (ENSMUSG00000027985.14, exon 1 of 12) protein_coding-exon (ENSMUSG00000027985.14, exon 1 of 12) 526 ENSMUSG00000106086.1 ENSMUSG00000106086 ENSMUST00000196419 Lef1os1 antisense Interval_60415 chr15 73622576 73622967 + 0 NA intron (ENSMUSG00000079020.9, intron 1 of 1) protein_coding-intron (ENSMUSG00000079020.9, intron 1 of 7) -23081 ENSMUSG00000099958.1 ENSMUSG00000099958 ENSMUST00000188278 1700010B13Rik processed_transcript Interval_138 GL456385.1 3478 3879 + 0 NA NA NA NA NA Interval_28590 chr11 77016087 77016311 + 0 NA intron (ENSMUSG00000020838.12, intron 6 of 14) protein_coding-intron (ENSMUSG00000020838.12, intron 5 of 13) -1978 ENSMUSG00000020838.12 ENSMUSG00000020838 ENSMUST00000137819 Slc6a4 protein_coding Interval_8131 chr1 135900095 135900515 + 0 NA intron (ENSMUSG00000026413.12, intron 2 of 13) protein_coding-intron (ENSMUSG00000026413.12, intron 2 of 13) -1216 ENSMUSG00000102414.1 ENSMUSG00000102414 ENSMUST00000191612 Gm36938 TEC Interval_71507 chr17 24211702 24212850 + 0 NA promoter-TSS (ENSMUSG00000085185.10) antisense-promoter-TSS (ENSMUSG00000085185.10) -2877 ENSMUSG00000117406.1 ENSMUSG00000117406 ENSMUST00000234909 Ntn3 protein_coding Interval_106430 chr3 96160467 96162159 + 0 NA promoter-TSS (ENSMUSG00000045934.15) protein_coding-promoter-TSS (ENSMUSG00000045934.15) -9273 ENSMUSG00000045934.15 ENSMUSG00000045934 ENSMUST00000196004 Mtmr11 protein_coding Interval_68735 chr16 85207329 85208251 + 0 NA Intergenic Intergenic 38941 ENSMUSG00000098604.1 ENSMUSG00000098604 ENSMUST00000184264 Gm27295 snoRNA Interval_143638 chr7 13532365 13533363 + 0 NA Intergenic Intergenic 7231 ENSMUSG00000098644.1 ENSMUSG00000098644 ENSMUST00000183795 Bsph2-ps unprocessed_pseudogene Interval_31741 chr11 102567490 102568964 + 0 NA Intergenic Intergenic 11048 ENSMUSG00000078640.9 ENSMUSG00000078640 ENSMUST00000107080 Gm11627 protein_coding Interval_126589 chr5 90507174 90507906 + 0 NA exon (ENSMUSG00000054932.6, exon 1 of 3) protein_coding-exon (ENSMUSG00000054932.6, exon 1 of 3) 109 ENSMUSG00000054932.6 ENSMUSG00000054932 ENSMUST00000202209 Afp protein_coding Interval_42500 chr13 14191549 14192303 + 0 NA TTS (ENSMUSG00000039219.18) protein_coding-TTS (ENSMUSG00000039219.18) 20873 ENSMUSG00000113775.1 ENSMUSG00000113775 ENSMUST00000221111 Gm48027 sense_intronic Interval_76289 chr17 78767289 78767661 + 0 NA intron (ENSMUSG00000039414.10, intron 2 of 9) protein_coding-intron (ENSMUSG00000039414.10, intron 28 of 35) 1589 ENSMUSG00000039414.10 ENSMUSG00000039414 ENSMUST00000232917 Heatr5b protein_coding Interval_69378 chr16 92571147 92571820 + 0 NA Intergenic Intergenic -18340 ENSMUSG00000116709.1 ENSMUSG00000116709 ENSMUST00000232213 Gm49722 lincRNA Interval_131317 chr5 136395493 136396698 + 0 NA intron (ENSMUSG00000086220.1, intron 3 of 4) protein_coding-intron (ENSMUSG00000029705.17, intron 3 of 23) -20292 ENSMUSG00000106479.1 ENSMUSG00000106479 ENSMUST00000200230 Mir721 miRNA Interval_4067 chr1 67177735 67178065 + 0 NA intron (ENSMUSG00000025991.8, intron 20 of 37) protein_coding-intron (ENSMUSG00000025991.8, intron 20 of 37) 54874 ENSMUSG00000025991.8 ENSMUSG00000025991 ENSMUST00000027144 Cps1 protein_coding Interval_10333 chr1 169514190 169514573 + 0 NA intron (ENSMUSG00000026683.14, intron 8 of 10) protein_coding-intron (ENSMUSG00000026683.14, intron 8 of 14) 8001 ENSMUSG00000026683.14 ENSMUSG00000026683 ENSMUST00000194831 Nuf2 protein_coding Interval_109463 chr3 142691839 142692333 + 0 NA Intergenic Intergenic -9000 ENSMUSG00000040213.13 ENSMUSG00000040213 ENSMUST00000128096 Kyat3 protein_coding Interval_94479 chr2 91517121 91517680 + 0 NA Intergenic Intergenic 6484 ENSMUSG00000081834.1 ENSMUSG00000081834 ENSMUST00000117149 Gm13770 processed_pseudogene Interval_53083 chr14 54340222 54342988 + 0 NA Intergenic Intergenic 7388 ENSMUSG00000105667.1 ENSMUSG00000105667 ENSMUST00000196637 Gm3945 processed_pseudogene Interval_84037 chr19 6885339 6885643 + 0 NA Intergenic Intergenic 24039 ENSMUSG00000024953.17 ENSMUSG00000024953 ENSMUST00000173091 Prdx5 protein_coding Interval_136889 chr6 63064449 63064987 + 0 NA Intergenic Intergenic -16546 ENSMUSG00000107708.1 ENSMUSG00000107708 ENSMUST00000203408 Gm19131 transcribed_unprocessed_pseudogene Interval_147832 chr7 73892030 73892398 + 0 NA Intergenic Intergenic 55320 ENSMUSG00000108375.1 ENSMUSG00000108375 ENSMUST00000205875 Gm45003 TEC Interval_25159 chr11 44620127 44622535 + 0 NA promoter-TSS (ENSMUSG00000057098.14) protein_coding-promoter-TSS (ENSMUSG00000057098.14) 3215 ENSMUSG00000057098.14 ENSMUSG00000057098 ENSMUST00000140822 Ebf1 protein_coding Interval_69283 chr16 91899039 91899789 + 0 NA promoter-TSS (ENSMUSG00000022957.20) protein_coding-promoter-TSS (ENSMUSG00000022957.20) -4649 ENSMUSG00000022957.20 ENSMUSG00000022957 ENSMUST00000137575 Itsn1 protein_coding Interval_69945 chr17 3401364 3402301 + 0 NA intron (ENSMUSG00000023800.15, intron 1 of 7) protein_coding-intron (ENSMUSG00000023800.15, intron 1 of 26) -54765 ENSMUSG00000115330.1 ENSMUSG00000115330 ENSMUST00000226386 Gm49221 processed_pseudogene Interval_50545 chr14 14877848 14878431 + 0 NA intron (ENSMUSG00000042567.20, intron 22 of 35) protein_coding-intron (ENSMUSG00000042567.20, intron 4 of 12) 74724 ENSMUSG00000042567.20 ENSMUSG00000042567 ENSMUST00000136826 Nek10 protein_coding Interval_99716 chr2 164454034 164455857 + 0 NA Intergenic Intergenic -2143 ENSMUSG00000045503.16 ENSMUSG00000045503 ENSMUST00000125086 Sys1 protein_coding Interval_72906 chr17 33139091 33140234 + 0 NA promoter-TSS (ENSMUSG00000048602.9) protein_coding-promoter-TSS (ENSMUSG00000048602.9) -30 ENSMUSG00000048602.9 ENSMUSG00000048602 ENSMUST00000131954 Morc2b protein_coding Interval_146340 chr7 45413141 45415037 + 0 NA exon (ENSMUSG00000074121.3, exon 1 of 3) protein_coding-exon (ENSMUSG00000074121.3, exon 1 of 3) 185 ENSMUSG00000074121.3 ENSMUSG00000074121 ENSMUST00000210347 Ntf5 protein_coding Interval_165077 chr9 44424566 44425303 + 0 NA Intergenic Intergenic -1543 ENSMUSG00000111849.1 ENSMUSG00000111849 ENSMUST00000213494 Gm47186 lincRNA Interval_119366 chr4 137243083 137243413 + 0 NA Intergenic Intergenic -19926 ENSMUSG00000082149.1 ENSMUSG00000082149 ENSMUST00000119286 Gm13002 processed_pseudogene Interval_54418 chr14 69181767 69182588 + 0 NA Intergenic Intergenic -8461 ENSMUSG00000022061.8 ENSMUSG00000022061 ENSMUST00000022646 Nkx3-1 protein_coding Interval_93940 chr2 79644492 79647903 + 0 NA intron (ENSMUSG00000027007.16, intron 6 of 15) protein_coding-intron (ENSMUSG00000027007.16, intron 8 of 16) 7015 ENSMUSG00000027007.16 ENSMUSG00000027007 ENSMUST00000133266 Itprid2 protein_coding Interval_102865 chr3 32375510 32375704 + 0 NA Intergenic Intergenic -2618 ENSMUSG00000102825.1 ENSMUSG00000102825 ENSMUST00000191961 Gm36990 TEC Interval_52701 chr14 48716331 48718963 + 0 NA exon (ENSMUSG00000098682.8, exon 4 of 5) lincRNA-exon (ENSMUSG00000098682.8, exon 4 of 5) 13463 ENSMUSG00000115429.1 ENSMUSG00000115429 ENSMUST00000227165 Gm49153 TEC Interval_7771 chr1 133547512 133548048 + 0 NA Intergenic Intergenic 18301 ENSMUSG00000101004.1 ENSMUSG00000101004 ENSMUST00000188004 Gm8596 processed_pseudogene Interval_120112 chr4 141913265 141913618 + 0 NA intron (ENSMUSG00000051435.11, intron 25 of 32) protein_coding-intron (ENSMUSG00000051435.11, intron 24 of 31) 8985 ENSMUSG00000051435.11 ENSMUSG00000051435 ENSMUST00000125293 Fhad1 protein_coding Interval_48401 chr13 98801151 98801364 + 0 NA promoter-TSS (ENSMUSG00000114458.1) antisense-promoter-TSS (ENSMUSG00000114458.1) 85 ENSMUSG00000114458.1 ENSMUSG00000114458 ENSMUST00000225263 Gm47551 antisense Interval_85604 chr19 29026476 29027321 + 0 NA TTS (ENSMUSG00000024780.7) protein_coding-TTS (ENSMUSG00000024780.7) 346 ENSMUSG00000024782.7 ENSMUSG00000024782 ENSMUST00000125587 Ak3 protein_coding Interval_24392 chr11 32907396 32908684 + 0 NA intron (ENSMUSG00000085402.1, intron 2 of 2) lincRNA-intron (ENSMUSG00000085402.1, intron 2 of 2) -2333 ENSMUSG00000081254.1 ENSMUSG00000081254 ENSMUST00000117772 Gm12112 processed_pseudogene Interval_69039 chr16 90247666 90247990 + 0 NA promoter-TSS (ENSMUSG00000022983.16) protein_coding-promoter-TSS (ENSMUSG00000022983.16) 27074 ENSMUSG00000022982.10 ENSMUSG00000022982 ENSMUST00000232505 Sod1 protein_coding Interval_110595 chr4 4424571 4424956 + 0 NA Intergenic Intergenic 103956 ENSMUSG00000085155.3 ENSMUSG00000085155 ENSMUST00000136880 Gm11780 processed_pseudogene Interval_117286 chr4 122588937 122589163 + 0 NA intron (ENSMUSG00000081377.1, intron 3 of 3) unprocessed_pseudogene-intron (ENSMUSG00000081377.1, intron 3 of 3) -3934 ENSMUSG00000084196.1 ENSMUSG00000084196 ENSMUST00000117190 Gm12874 processed_pseudogene Interval_56182 chr14 111252797 111253353 + 0 NA Intergenic Intergenic -28971 ENSMUSG00000093362.1 ENSMUSG00000093362 ENSMUST00000175621 Gm22802 miRNA Interval_87201 chr19 46835519 46836980 + 0 NA intron (ENSMUSG00000064105.13, intron 1 of 1) protein_coding-intron (ENSMUSG00000064105.13, intron 1 of 6) -29411 ENSMUSG00000064105.13 ENSMUSG00000064105 ENSMUST00000235671 Cnnm2 protein_coding Interval_62409 chr15 92083817 92084580 + 0 NA intron (ENSMUSG00000055022.14, intron 1 of 23) protein_coding-intron (ENSMUSG00000055022.14, intron 1 of 8) 33033 ENSMUSG00000055022.14 ENSMUSG00000055022 ENSMUST00000068378 Cntn1 protein_coding Interval_9868 chr1 163514227 163514715 + 0 NA Intergenic Intergenic -92906 ENSMUSG00000101869.1 ENSMUSG00000101869 ENSMUST00000185992 Gm29500 lincRNA Interval_169131 chr9 93285435 93285848 + 0 NA Intergenic Intergenic 106729 ENSMUSG00000098171.1 ENSMUSG00000098171 ENSMUST00000183322 Gm9621 processed_pseudogene Interval_77610 chr17 93064977 93065229 + 0 NA Intergenic Intergenic 88582 ENSMUSG00000117409.1 ENSMUSG00000117409 ENSMUST00000234475 Gm49996 processed_pseudogene Interval_167076 chr9 65093446 65094846 + 0 NA intron (ENSMUSG00000111471.1, intron 1 of 4) antisense-intron (ENSMUSG00000111471.1, intron 1 of 4) 209 ENSMUSG00000111471.1 ENSMUSG00000111471 ENSMUST00000214559 Gm47350 antisense Interval_65196 chr16 20467896 20468150 + 0 NA Intergenic Intergenic -20765 ENSMUSG00000093381.1 ENSMUSG00000093381 ENSMUST00000177503 Gm20615 unprocessed_pseudogene Interval_9208 chr1 155071155 155071696 + 0 NA intron (ENSMUSG00000096950.2, intron 3 of 6) lincRNA-intron (ENSMUSG00000096950.2, intron 3 of 6) 11841 ENSMUSG00000096950.2 ENSMUSG00000096950 ENSMUST00000181160 Gm9530 lincRNA Interval_156377 chr8 47810492 47811444 + 0 NA TTS (ENSMUSG00000110464.1) lincRNA-TTS (ENSMUSG00000110464.1) 7253 ENSMUSG00000110464.1 ENSMUSG00000110464 ENSMUST00000212295 1700061N14Rik lincRNA Interval_132946 chr5 148903861 148905441 + 0 NA TTS (ENSMUSG00000041298.15) protein_coding-TTS (ENSMUSG00000041298.15) -22037 ENSMUSG00000106810.1 ENSMUSG00000106810 ENSMUST00000202134 Gm43600 unprocessed_pseudogene Interval_38485 chr12 79362352 79362635 + 0 NA intron (ENSMUSG00000059060.15, intron 1 of 2) protein_coding-intron (ENSMUSG00000059060.15, intron 7 of 7) 35140 ENSMUSG00000059060.15 ENSMUSG00000059060 ENSMUST00000221257 Rad51b protein_coding Interval_139263 chr6 97666184 97667688 + 0 NA Intergenic Intergenic -63503 ENSMUSG00000094510.1 ENSMUSG00000094510 ENSMUST00000180099 Gm24565 snRNA Interval_37290 chr12 64847230 64847740 + 0 NA Intergenic Intergenic 30143 ENSMUSG00000113075.1 ENSMUSG00000113075 ENSMUST00000223350 Rpl7a-ps1 processed_pseudogene Interval_65270 chr16 21158679 21159594 + 0 NA Intergenic Intergenic -5136 ENSMUSG00000090356.2 ENSMUSG00000090356 ENSMUST00000170665 Teddm3 protein_coding Interval_14056 chr10 26332902 26334700 + 0 NA TTS (ENSMUSG00000039089.15) protein_coding-TTS (ENSMUSG00000039089.15) -17527 ENSMUSG00000039089.15 ENSMUSG00000039089 ENSMUST00000217699 L3mbtl3 protein_coding Interval_29075 chr11 80181025 80181600 + 0 NA Intergenic Intergenic -2911 ENSMUSG00000020707.6 ENSMUSG00000020707 ENSMUST00000134909 Rnf135 protein_coding Interval_79209 chr18 25670505 25670750 + 0 NA intron (ENSMUSG00000024268.16, intron 2 of 5) protein_coding-intron (ENSMUSG00000024268.16, intron 2 of 12) -43143 ENSMUSG00000114511.1 ENSMUSG00000114511 ENSMUST00000224766 0710001A04Rik antisense Interval_6968 chr1 121454097 121456119 + 0 NA intron (ENSMUSG00000026339.18, intron 6 of 23) protein_coding-intron (ENSMUSG00000026339.18, intron 6 of 23) 24033 ENSMUSG00000026339.18 ENSMUSG00000026339 ENSMUST00000152959 Ccdc93 protein_coding Interval_135681 chr6 43297076 43298181 + 0 NA Intergenic Intergenic 7507 ENSMUSG00000029736.15 ENSMUSG00000029736 ENSMUST00000172554 Nobox protein_coding Interval_12619 chr10 3940116 3942599 + 0 NA intron (ENSMUSG00000040624.18, intron 10 of 15) protein_coding-intron (ENSMUSG00000040624.18, intron 10 of 15) 5734 ENSMUSG00000082605.1 ENSMUSG00000082605 ENSMUST00000119653 Gm16148 processed_pseudogene Interval_103259 chr3 37596350 37596949 + 0 NA Intergenic Intergenic 3423 ENSMUSG00000081093.1 ENSMUSG00000081093 ENSMUST00000119004 Gm12565 processed_pseudogene Interval_75482 chr17 67175714 67176226 + 0 NA intron (ENSMUSG00000033278.10, intron 2 of 19) protein_coding-intron (ENSMUSG00000033278.10, intron 2 of 32) -149735 ENSMUSG00000093508.1 ENSMUSG00000093508 ENSMUST00000176783 Mir5709 miRNA Interval_123028 chr5 28678560 28678800 + 0 NA intron (ENSMUSG00000097726.7, intron 4 of 6) antisense-intron (ENSMUSG00000097726.7, intron 2 of 6) 101407 ENSMUSG00000104587.1 ENSMUSG00000104587 ENSMUST00000197020 Gm43161 TEC Interval_121259 chr4 154471539 154472064 + 0 NA intron (ENSMUSG00000039410.16, intron 3 of 15) protein_coding-intron (ENSMUSG00000039410.16, intron 3 of 16) -78481 ENSMUSG00000086565.1 ENSMUSG00000086565 ENSMUST00000143888 Gm13133 antisense Interval_89194 chr2 17977751 17978933 + 0 NA Intergenic Intergenic 18616 ENSMUSG00000062651.4 ENSMUSG00000062651 ENSMUST00000105001 H2al2a protein_coding Interval_4525 chr1 74791715 74792268 + 0 NA exon (ENSMUSG00000026167.14, exon 1 of 4) protein_coding-exon (ENSMUSG00000026167.14, exon 1 of 4) -1372 ENSMUSG00000026167.14 ENSMUSG00000026167 ENSMUST00000187238 Wnt10a protein_coding Interval_15848 chr10 58368962 58369380 + 0 NA intron (ENSMUSG00000019920.18, intron 1 of 9) protein_coding-intron (ENSMUSG00000019920.18, intron 1 of 9) -2283 ENSMUSG00000019920.18 ENSMUSG00000019920 ENSMUST00000148799 Lims1 protein_coding Interval_97975 chr2 146302018 146302863 + 0 NA intron (ENSMUSG00000037110.20, intron 39 of 41) protein_coding-intron (ENSMUSG00000037110.20, intron 38 of 40) -3107 ENSMUSG00000042938.8 ENSMUSG00000042938 ENSMUST00000122417 Gm14117 processed_pseudogene Interval_116477 chr4 114308488 114308730 + 0 NA Intergenic Intergenic -98115 ENSMUSG00000070867.4 ENSMUSG00000070867 ENSMUST00000094894 Trabd2b protein_coding Interval_41813 chr12 119804435 119804750 + 0 NA Intergenic Intergenic 72050 ENSMUSG00000114137.1 ENSMUSG00000114137 ENSMUST00000222158 Gm48685 unprocessed_pseudogene Interval_162504 chr9 3403267 3404657 + 0 NA promoter-TSS (ENSMUSG00000025898.6) protein_coding-promoter-TSS (ENSMUSG00000025898.6) -126 ENSMUSG00000025898.6 ENSMUSG00000025898 ENSMUST00000212101 Cwf19l2 protein_coding Interval_139154 chr6 96373108 96373780 + 0 NA intron (ENSMUSG00000059187.12, intron 2 of 4) protein_coding-intron (ENSMUSG00000059187.12, intron 1 of 3) 96087 ENSMUSG00000065239.1 ENSMUSG00000065239 ENSMUST00000083305 Gm22971 snRNA Interval_23973 chr11 29030111 29031219 + 0 NA Intergenic Intergenic 73941 ENSMUSG00000081695.1 ENSMUSG00000081695 ENSMUST00000121462 Rpsa-ps5 processed_pseudogene Interval_69119 chr16 90776280 90777709 + 0 NA intron (ENSMUSG00000039929.14, intron 20 of 38) protein_coding-intron (ENSMUSG00000039929.14, intron 20 of 38) 33398 ENSMUSG00000039929.14 ENSMUSG00000039929 ENSMUST00000128989 Urb1 protein_coding Interval_42226 chr13 10255297 10255481 + 0 NA intron (ENSMUSG00000046159.16, intron 1 of 2) protein_coding-intron (ENSMUSG00000046159.16, intron 1 of 4) -74582 ENSMUSG00000113261.1 ENSMUSG00000113261 ENSMUST00000222625 Gm47404 sense_intronic Interval_31683 chr11 102238059 102238858 + 0 NA Intergenic Intergenic -8308 ENSMUSG00000098863.1 ENSMUSG00000098863 ENSMUST00000183986 Mir8101 miRNA Interval_48562 chr13 100270170 100270396 + 0 NA intron (ENSMUSG00000114576.1, intron 3 of 4) unprocessed_pseudogene-intron (ENSMUSG00000114576.1, intron 3 of 4) 8534 ENSMUSG00000114576.1 ENSMUSG00000114576 ENSMUST00000224886 Naip3-ps1 unprocessed_pseudogene Interval_139271 chr6 97750589 97750800 + 0 NA Intergenic Intergenic 20255 ENSMUSG00000094510.1 ENSMUSG00000094510 ENSMUST00000180099 Gm24565 snRNA Interval_124232 chr5 41782034 41782264 + 0 NA Intergenic Intergenic -17648 ENSMUSG00000049691.8 ENSMUSG00000049691 ENSMUST00000060820 Nkx3-2 protein_coding Interval_165584 chr9 49911963 49913513 + 0 NA Intergenic Intergenic -42140 ENSMUSG00000111682.1 ENSMUSG00000111682 ENSMUST00000215094 Gm47543 lincRNA Interval_168361 chr9 79599575 79600351 + 0 NA exon (ENSMUSG00000032332.17, exon 66 of 66) protein_coding-exon (ENSMUSG00000032332.17, exon 66 of 66) 26155 ENSMUSG00000111207.1 ENSMUSG00000111207 ENSMUST00000216602 Gm8125 processed_pseudogene Interval_93877 chr2 77865243 77865445 + 0 NA Intergenic Intergenic 16123 ENSMUSG00000087353.1 ENSMUSG00000087353 ENSMUST00000154480 Gm13727 processed_transcript Interval_70634 chr17 12607421 12607717 + 0 NA intron (ENSMUSG00000040966.10, intron 4 of 10) protein_coding-intron (ENSMUSG00000040966.10, intron 4 of 10) 23376 ENSMUSG00000040966.10 ENSMUSG00000040966 ENSMUST00000233066 Slc22a2 protein_coding Interval_157935 chr8 76764216 76764425 + 0 NA intron (ENSMUSG00000074235.4, intron 1 of 1) bidirectional_promoter_lncRNA-intron (ENSMUSG00000074235.4, intron 1 of 1) 98728 ENSMUSG00000087321.1 ENSMUSG00000087321 ENSMUST00000139800 Gm5353 processed_pseudogene Interval_54629 chr14 72497251 72497452 + 0 NA Intergenic Intergenic -5513 ENSMUSG00000109446.1 ENSMUSG00000109446 ENSMUST00000208955 Gm9195 protein_coding Interval_168551 chr9 83488287 83488961 + 0 NA Intergenic Intergenic 8592 ENSMUSG00000099816.1 ENSMUSG00000099816 ENSMUST00000190725 Gm28552 processed_pseudogene Interval_17195 chr10 74750785 74752439 + 0 NA Intergenic Intergenic -69110 ENSMUSG00000112686.1 ENSMUSG00000112686 ENSMUST00000218638 Gm7034 processed_pseudogene Interval_151983 chr7 127946133 127947179 + 0 NA promoter-TSS (ENSMUSG00000070371.11) protein_coding-promoter-TSS (ENSMUSG00000070371.11) -11206 ENSMUSG00000070371.11 ENSMUSG00000070371 ENSMUST00000144192 Prss36 protein_coding Interval_161346 chr8 119883330 119883595 + 0 NA Intergenic Intergenic 21193 ENSMUSG00000031828.9 ENSMUSG00000031828 ENSMUST00000034287 Klhl36 protein_coding Interval_58655 chr15 36855525 36855913 + 0 NA Intergenic Intergenic 12903 ENSMUSG00000115750.1 ENSMUSG00000115750 ENSMUST00000226620 Gm49282 lincRNA Interval_87619 chr19 53754574 53754936 + 0 NA intron (ENSMUSG00000043639.15, intron 1 of 13) protein_coding-intron (ENSMUSG00000043639.15, intron 1 of 13) 13555 ENSMUSG00000089807.1 ENSMUSG00000089807 ENSMUST00000161107 Gm16298 processed_pseudogene Interval_56509 chr14 119516153 119516522 + 0 NA intron (ENSMUSG00000053465.6, intron 1 of 1) protein_coding-intron (ENSMUSG00000053465.6, intron 1 of 1) -127675 ENSMUSG00000115196.1 ENSMUSG00000115196 ENSMUST00000226465 Gm6212 processed_pseudogene Interval_31987 chr11 104319039 104319942 + 0 NA intron (ENSMUSG00000018411.17, intron 8 of 10) protein_coding-intron (ENSMUSG00000018411.17, intron 9 of 11) -60129 ENSMUSG00000085134.1 ENSMUSG00000085134 ENSMUST00000137561 Gm11659 antisense Interval_169677 chr9 100301480 100301880 + 0 NA Intergenic Intergenic 21844 ENSMUSG00000101042.1 ENSMUSG00000101042 ENSMUST00000187644 Gm28167 lincRNA Interval_109492 chr3 142904778 142905128 + 0 NA Intergenic Intergenic 6878 ENSMUSG00000105671.1 ENSMUSG00000105671 ENSMUST00000197517 Gm31306 transcribed_processed_pseudogene Interval_48232 chr13 97326630 97326827 + 0 NA Intergenic Intergenic 43545 ENSMUSG00000097932.2 ENSMUSG00000097932 ENSMUST00000181148 C430039J16Rik lincRNA Interval_1487 chr1 24068601 24069081 + 0 NA intron (ENSMUSG00000026153.15, intron 2 of 20) protein_coding-intron (ENSMUSG00000026153.15, intron 3 of 20) 17685 ENSMUSG00000026153.15 ENSMUSG00000026153 ENSMUST00000185525 Fam135a protein_coding Interval_23411 chr11 22437643 22438174 + 0 NA TTS (ENSMUSG00000085856.1) lincRNA-TTS (ENSMUSG00000085856.1) 1867 ENSMUSG00000085856.1 ENSMUSG00000085856 ENSMUST00000127483 Gm12050 lincRNA Interval_60717 chr15 76331033 76331885 + 0 NA promoter-TSS (ENSMUSG00000022561.13) protein_coding-promoter-TSS (ENSMUSG00000022561.13) -829 ENSMUSG00000022561.13 ENSMUSG00000022561 ENSMUST00000165179 Gpaa1 protein_coding Interval_102857 chr3 32333567 32334433 + 0 NA TTS (ENSMUSG00000027663.12) protein_coding-TTS (ENSMUSG00000027663.12) 32014 ENSMUSG00000027663.12 ENSMUSG00000027663 ENSMUST00000195055 Zmat3 protein_coding Interval_65219 chr16 20619531 20622828 + 0 NA exon (ENSMUSG00000051146.2, exon 1 of 2) protein_coding-exon (ENSMUSG00000051146.2, exon 1 of 2) 108 ENSMUSG00000051146.2 ENSMUSG00000051146 ENSMUST00000052939 Camk2n2 protein_coding Interval_27629 chr11 69133495 69134831 + 0 NA promoter-TSS (ENSMUSG00000020892.10) protein_coding-promoter-TSS (ENSMUSG00000020892.10) 21 ENSMUSG00000020892.10 ENSMUSG00000020892 ENSMUST00000139257 Aloxe3 protein_coding Interval_133671 chr6 8353465 8354568 + 0 NA TTS (ENSMUSG00000089890.1) antisense-TTS (ENSMUSG00000089890.1) 10120 ENSMUSG00000089890.1 ENSMUSG00000089890 ENSMUST00000161366 Gm16055 antisense Interval_114099 chr4 63426308 63426868 + 0 NA intron (ENSMUSG00000039137.18, intron 2 of 2) protein_coding-intron (ENSMUSG00000039137.18, intron 7 of 11) 6734 ENSMUSG00000039137.18 ENSMUSG00000039137 ENSMUST00000140720 Whrn protein_coding Interval_149921 chr7 102638166 102639250 + 0 NA intron (ENSMUSG00000073971.3, intron 1 of 1) protein_coding-intron (ENSMUSG00000073971.3, intron 1 of 2) 276 ENSMUSG00000073971.3 ENSMUSG00000073971 ENSMUST00000098221 Olfr554 protein_coding Interval_25634 chr11 50314182 50314813 + 0 NA intron (ENSMUSG00000020368.15, intron 1 of 14) protein_coding-intron (ENSMUSG00000020368.15, intron 1 of 14) 11176 ENSMUSG00000020368.15 ENSMUSG00000020368 ENSMUST00000155801 Canx protein_coding Interval_104874 chr3 77200389 77200851 + 0 NA Intergenic Intergenic -95335 ENSMUSG00000088481.1 ENSMUSG00000088481 ENSMUST00000157856 Gm23644 snoRNA Interval_5002 chr1 84103669 84103938 + 0 NA intron (ENSMUSG00000045658.16, intron 2 of 2) protein_coding-intron (ENSMUSG00000045658.16, intron 2 of 2) 30707 ENSMUSG00000102750.1 ENSMUSG00000102750 ENSMUST00000193393 Gm37058 TEC Interval_143303 chr7 5037953 5039159 + 0 NA promoter-TSS (ENSMUSG00000043290.6) protein_coding-promoter-TSS (ENSMUSG00000043290.6) -110 ENSMUSG00000043290.6 ENSMUSG00000043290 ENSMUST00000062428 Zfp784 protein_coding Interval_156987 chr8 63876826 63878652 + 0 NA promoter-TSS (ENSMUSG00000077153.1) snoRNA-promoter-TSS (ENSMUSG00000077153.1) -457 ENSMUSG00000077153.1 ENSMUSG00000077153 ENSMUST00000103965 Gm24580 snoRNA Interval_94222 chr2 85322068 85322346 + 0 NA Intergenic Intergenic 17108 ENSMUSG00000075223.4 ENSMUSG00000075223 ENSMUST00000111598 Olfr987 protein_coding Interval_93152 chr2 70652223 70652414 + 0 NA Intergenic Intergenic 9791 ENSMUSG00000097025.2 ENSMUSG00000097025 ENSMUST00000180559 Gm26558 antisense Interval_137818 chr6 82736709 82738444 + 0 NA intron (ENSMUSG00000000628.10, intron 9 of 17) protein_coding-intron (ENSMUSG00000000628.10, intron 9 of 17) -26706 ENSMUSG00000090293.1 ENSMUSG00000090293 ENSMUST00000168990 Gm17034 antisense Interval_162651 chr9 7335873 7336193 + 0 NA Intergenic Intergenic -8348 ENSMUSG00000049723.14 ENSMUSG00000049723 ENSMUST00000127722 Mmp12 protein_coding Interval_96278 chr2 121218136 121218561 + 0 NA promoter-TSS (ENSMUSG00000043909.16) protein_coding-promoter-TSS (ENSMUSG00000043909.16) 3031 ENSMUSG00000043909.16 ENSMUSG00000043909 ENSMUST00000124060 Trp53bp1 protein_coding Interval_119595 chr4 138597705 138598299 + 0 NA intron (ENSMUSG00000028753.12, intron 4 of 4) protein_coding-intron (ENSMUSG00000028753.12, intron 8 of 21) 8528 ENSMUSG00000028753.12 ENSMUSG00000028753 ENSMUST00000133319 Vwa5b1 protein_coding Interval_131298 chr5 136243902 136245778 + 0 NA promoter-TSS (ENSMUSG00000005057.13) protein_coding-promoter-TSS (ENSMUSG00000005057.13) -22178 ENSMUSG00000005057.13 ENSMUSG00000005057 ENSMUST00000196245 Sh2b2 protein_coding Interval_77173 chr17 87091033 87091717 + 0 NA Intergenic Intergenic 13104 ENSMUSG00000071035.5 ENSMUSG00000071035 ENSMUST00000090731 Gm5499 processed_pseudogene Interval_9713 chr1 161228416 161228667 + 0 NA intron (ENSMUSG00000102817.2, intron 15 of 20) transcribed_unprocessed_pseudogene-intron (ENSMUSG00000102817.2, intron 22 of 25) 22621 ENSMUSG00000026701.15 ENSMUSG00000026701 ENSMUST00000130867 Prdx6 protein_coding Interval_36082 chr12 35331440 35331836 + 0 NA Intergenic Intergenic 22747 ENSMUSG00000105488.1 ENSMUSG00000105488 ENSMUST00000199843 Gm44396 miRNA Interval_87184 chr19 46697389 46698555 + 0 NA intron (ENSMUSG00000062376.7, intron 1 of 4) protein_coding-intron (ENSMUSG00000062376.7, intron 1 of 4) 8066 ENSMUSG00000062376.7 ENSMUSG00000062376 ENSMUST00000074912 Borcs7 protein_coding Interval_99292 chr2 158721080 158722122 + 0 NA intron (ENSMUSG00000037754.13, intron 1 of 8) protein_coding-intron (ENSMUSG00000037754.13, intron 2 of 10) -18537 ENSMUSG00000093040.1 ENSMUSG00000093040 ENSMUST00000175299 Gm26141 miRNA Interval_49105 chr13 108082810 108083296 + 0 NA intron (ENSMUSG00000068184.7, intron 2 of 3) protein_coding-intron (ENSMUSG00000068184.7, intron 2 of 3) 38567 ENSMUSG00000071180.5 ENSMUSG00000071180 ENSMUST00000224390 Smim15 protein_coding Interval_93928 chr2 79458982 79459619 + 0 NA Intergenic Intergenic -2549 ENSMUSG00000034701.9 ENSMUSG00000034701 ENSMUST00000041099 Neurod1 protein_coding Interval_21370 chr10 128211179 128213634 + 0 NA promoter-TSS (ENSMUSG00000051346.9) protein_coding-promoter-TSS (ENSMUSG00000051346.9) -599 ENSMUSG00000051346.9 ENSMUSG00000051346 ENSMUST00000061995 Spryd4 protein_coding Interval_123497 chr5 32934248 32935270 + 0 NA intron (ENSMUSG00000037426.18, intron 1 of 2) protein_coding-intron (ENSMUSG00000037426.18, intron 25 of 32) 809 ENSMUSG00000037426.18 ENSMUSG00000037426 ENSMUST00000127560 Depdc5 protein_coding Interval_32505 chr11 107986062 107986790 + 0 NA intron (ENSMUSG00000050965.14, intron 1 of 5) protein_coding-intron (ENSMUSG00000050965.14, intron 8 of 16) -7596 ENSMUSG00000086078.1 ENSMUSG00000086078 ENSMUST00000137175 Gm11657 antisense Interval_124425 chr5 46135989 46136234 + 0 NA Intergenic Intergenic -203702 ENSMUSG00000106602.1 ENSMUSG00000106602 ENSMUST00000198088 4930405L22Rik lincRNA Interval_158210 chr8 79804084 79805397 + 0 NA Intergenic Intergenic -1129 ENSMUSG00000110048.1 ENSMUSG00000110048 ENSMUST00000209386 Gm45433 processed_pseudogene Interval_123342 chr5 31584434 31584639 + 0 NA Intergenic Intergenic 3457 ENSMUSG00000107015.1 ENSMUSG00000107015 ENSMUST00000202297 2900076G11Rik TEC Interval_105458 chr3 86788063 86789313 + 0 NA TTS (ENSMUSG00000028078.14) protein_coding-TTS (ENSMUSG00000028078.14) -10035 ENSMUSG00000104108.1 ENSMUSG00000104108 ENSMUST00000194490 Gm37876 antisense Interval_89850 chr2 25975304 25977101 + 0 NA intron (ENSMUSG00000026933.17, intron 1 of 2) protein_coding-intron (ENSMUSG00000026933.17, intron 1 of 16) 7080 ENSMUSG00000026933.17 ENSMUSG00000026933 ENSMUST00000127823 Camsap1 protein_coding Interval_86995 chr19 45436149 45436652 + 0 NA intron (ENSMUSG00000025217.15, intron 3 of 13) protein_coding-intron (ENSMUSG00000025217.15, intron 2 of 14) 14795 ENSMUSG00000057605.4 ENSMUSG00000057605 ENSMUST00000077435 Gm6807 processed_pseudogene Interval_120227 chr4 144546080 144546370 + 0 NA exon (ENSMUSG00000082418.1, exon 1 of 1) processed_pseudogene-exon (ENSMUSG00000082418.1, exon 1 of 1) 2343 ENSMUSG00000082418.1 ENSMUSG00000082418 ENSMUST00000117079 Gm13126 processed_pseudogene Interval_61397 chr15 81338304 81338470 + 0 NA intron (ENSMUSG00000022404.8, intron 3 of 7) protein_coding-intron (ENSMUSG00000022404.8, intron 3 of 8) 22390 ENSMUSG00000022404.8 ENSMUSG00000022404 ENSMUST00000231078 Slc25a17 protein_coding Interval_123333 chr5 31512102 31513295 + 0 NA exon (ENSMUSG00000064037.13, exon 14 of 14) protein_coding-exon (ENSMUSG00000064037.13, exon 14 of 14) 5637 ENSMUSG00000064037.13 ENSMUSG00000064037 ENSMUST00000202515 Gpn1 protein_coding Interval_136955 chr6 65069377 65069804 + 0 NA intron (ENSMUSG00000029920.9, intron 4 of 21) protein_coding-intron (ENSMUSG00000029920.9, intron 6 of 23) 26923 ENSMUSG00000029920.9 ENSMUSG00000029920 ENSMUST00000203104 Smarcad1 protein_coding Interval_80442 chr18 42272657 42273327 + 0 NA Intergenic Intergenic 2205 ENSMUSG00000117662.1 ENSMUSG00000117662 ENSMUST00000236054 Gm4013 processed_transcript Interval_73833 chr17 44259210 44259720 + 0 NA intron (ENSMUSG00000023959.10, intron 4 of 5) protein_coding-intron (ENSMUSG00000023959.10, intron 4 of 5) 108438 ENSMUSG00000117106.1 ENSMUSG00000117106 ENSMUST00000233110 Gm49872 lincRNA Interval_77018 chr17 85664201 85665521 + 0 NA Intergenic Intergenic 23413 ENSMUSG00000024134.11 ENSMUSG00000024134 ENSMUST00000024947 Six2 protein_coding Interval_104339 chr3 63668748 63669166 + 0 NA Intergenic Intergenic -101255 ENSMUSG00000088360.1 ENSMUSG00000088360 ENSMUST00000157735 Gm23500 snRNA Interval_23219 chr11 20614595 20614851 + 0 NA intron (ENSMUSG00000049800.13, intron 1 of 1) protein_coding-intron (ENSMUSG00000049800.13, intron 1 of 1) -39534 ENSMUSG00000083555.1 ENSMUSG00000083555 ENSMUST00000121890 Gm12035 processed_pseudogene Interval_109964 chr3 152216048 152216635 + 0 NA intron (ENSMUSG00000028034.15, intron 3 of 19) protein_coding-intron (ENSMUSG00000028034.15, intron 3 of 21) 5859 ENSMUSG00000028034.15 ENSMUSG00000028034 ENSMUST00000200207 Fubp1 protein_coding Interval_59549 chr15 55210387 55210948 + 0 NA intron (ENSMUSG00000022419.16, intron 5 of 8) protein_coding-intron (ENSMUSG00000022419.16, intron 5 of 8) 51936 ENSMUSG00000095792.1 ENSMUSG00000095792 ENSMUST00000179457 Gm26296 snRNA Interval_131703 chr5 139405346 139406003 + 0 NA promoter-TSS (ENSMUSG00000044092.8) protein_coding-promoter-TSS (ENSMUSG00000044092.8) -791 ENSMUSG00000044092.8 ENSMUSG00000044092 ENSMUST00000164078 C130050O18Rik protein_coding Interval_155048 chr8 25948636 25948829 + 0 NA intron (ENSMUSG00000037260.8, intron 1 of 4) protein_coding-intron (ENSMUSG00000037260.8, intron 14 of 17) 25321 ENSMUSG00000037260.8 ENSMUSG00000037260 ENSMUST00000209420 Hgsnat protein_coding Interval_151726 chr7 126274438 126275268 + 0 NA intron (ENSMUSG00000042978.11, intron 1 of 1) protein_coding-intron (ENSMUSG00000042978.11, intron 1 of 3) 25063 ENSMUSG00000066180.5 ENSMUSG00000066180 ENSMUST00000084598 Gm10155 processed_pseudogene Interval_77532 chr17 90933542 90933955 + 0 NA intron (ENSMUSG00000024109.18, intron 1 of 12) protein_coding-intron (ENSMUSG00000024109.18, intron 4 of 20) 72579 ENSMUSG00000090160.1 ENSMUSG00000090160 ENSMUST00000162121 4930480K15Rik antisense Interval_15186 chr10 43220690 43222414 + 0 NA promoter-TSS (ENSMUSG00000038240.13) protein_coding-promoter-TSS (ENSMUSG00000038240.13) -184 ENSMUSG00000038240.13 ENSMUSG00000038240 ENSMUST00000162008 Pdss2 protein_coding Interval_58695 chr15 37174889 37175326 + 0 NA Intergenic Intergenic -2703 ENSMUSG00000115848.1 ENSMUSG00000115848 ENSMUST00000227699 Gm9509 processed_pseudogene Interval_113540 chr4 56035825 56036554 + 0 NA Intergenic Intergenic -42450 ENSMUSG00000085643.1 ENSMUSG00000085643 ENSMUST00000134099 Gm12519 lincRNA Interval_161315 chr8 119688895 119689572 + 0 NA Intergenic Intergenic -10837 ENSMUSG00000034112.9 ENSMUSG00000034112 ENSMUST00000212454 Atp2c2 protein_coding Interval_86848 chr19 44332119 44332917 + 0 NA promoter-TSS (ENSMUSG00000050195.8) protein_coding-promoter-TSS (ENSMUSG00000050195.8) -574 ENSMUSG00000050195.8 ENSMUSG00000050195 ENSMUST00000058856 Scd4 protein_coding Interval_172226 chrX 10714535 10715192 + 0 NA promoter-TSS (ENSMUSG00000008035.12) protein_coding-promoter-TSS (ENSMUSG00000008035.12) -2605 ENSMUSG00000008035.12 ENSMUSG00000008035 ENSMUST00000156321 Mid1ip1 protein_coding Interval_103527 chr3 47283006 47283557 + 0 NA Intergenic Intergenic -17481 ENSMUSG00000103491.1 ENSMUSG00000103491 ENSMUST00000194097 Gm10730 TEC Interval_58586 chr15 36396452 36396661 + 0 NA Intergenic Intergenic -6384 ENSMUSG00000114981.1 ENSMUSG00000114981 ENSMUST00000226850 Gm34093 lincRNA Interval_115158 chr4 92292830 92293109 + 0 NA Intergenic Intergenic 80379 ENSMUSG00000083296.1 ENSMUSG00000083296 ENSMUST00000119531 Gm12638 processed_pseudogene Interval_61225 chr15 80090044 80092696 + 0 NA promoter-TSS (ENSMUSG00000022415.12) protein_coding-promoter-TSS (ENSMUSG00000022415.12) -2817 ENSMUSG00000064884.1 ENSMUSG00000064884 ENSMUST00000082950 Gm24204 snRNA Interval_87616 chr19 53747581 53748719 + 0 NA intron (ENSMUSG00000043639.15, intron 1 of 13) protein_coding-intron (ENSMUSG00000043639.15, intron 1 of 13) 20160 ENSMUSG00000089807.1 ENSMUSG00000089807 ENSMUST00000161107 Gm16298 processed_pseudogene Interval_79170 chr18 25383648 25384199 + 0 NA intron (ENSMUSG00000033632.16, intron 9 of 11) protein_coding-intron (ENSMUSG00000033632.16, intron 7 of 9) -7878 ENSMUSG00000089908.1 ENSMUSG00000089908 ENSMUST00000163015 Gm16558 processed_pseudogene Interval_151889 chr7 127345071 127346892 + 0 NA promoter-TSS (ENSMUSG00000047371.7) protein_coding-promoter-TSS (ENSMUSG00000047371.7) -392 ENSMUSG00000047371.7 ENSMUSG00000047371 ENSMUST00000205266 Zfp768 protein_coding Interval_27347 chr11 66872331 66872696 + 0 NA Intergenic Intergenic -39468 ENSMUSG00000048070.4 ENSMUSG00000048070 ENSMUST00000123434 Pirt protein_coding Interval_72531 chr17 30532478 30533961 + 0 NA intron (ENSMUSG00000118341.1, intron 1 of 6) protein_coding-intron (ENSMUSG00000062202.14, intron 1 of 11) -8316 ENSMUSG00000062202.14 ENSMUSG00000062202 ENSMUST00000236825 Btbd9 protein_coding Interval_159675 chr8 96674783 96674986 + 0 NA Intergenic Intergenic 18755 ENSMUSG00000077938.1 ENSMUSG00000077938 ENSMUST00000104745 Gm24132 miRNA Interval_88415 chr2 4940534 4941956 + 0 NA promoter-TSS (ENSMUSG00000086670.1) processed_pseudogene-promoter-TSS (ENSMUSG00000086670.1) -929 ENSMUSG00000086670.1 ENSMUSG00000086670 ENSMUST00000142299 Gm13194 processed_pseudogene Interval_63378 chr15 100691974 100692177 + 0 NA TTS (ENSMUSG00000037280.12) protein_coding-TTS (ENSMUSG00000037280.12) -3705 ENSMUSG00000090062.2 ENSMUSG00000090062 ENSMUST00000160960 Galnt6os antisense Interval_160450 chr8 109575772 109576609 + 0 NA intron (ENSMUSG00000031722.10, intron 4 of 4) protein_coding-intron (ENSMUSG00000031722.10, intron 4 of 4) 2820 ENSMUSG00000031722.10 ENSMUSG00000031722 ENSMUST00000212018 Hp protein_coding Interval_11992 chr1 188623004 188623215 + 0 NA promoter-TSS (ENSMUSG00000077235.1) snoRNA-promoter-TSS (ENSMUSG00000077235.1) -56 ENSMUSG00000077235.1 ENSMUSG00000077235 ENSMUST00000104047 Gm25095 snoRNA Interval_158028 chr8 78131959 78132515 + 0 NA Intergenic Intergenic 24277 ENSMUSG00000109948.1 ENSMUSG00000109948 ENSMUST00000210236 Gm45288 processed_pseudogene Interval_64231 chr16 9385337 9385888 + 0 NA Intergenic Intergenic 226842 ENSMUSG00000116123.1 ENSMUSG00000116123 ENSMUST00000229655 Gm49451 lincRNA Interval_34418 chr12 3972945 3973553 + 0 NA intron (ENSMUSG00000020658.10, intron 2 of 6) protein_coding-intron (ENSMUSG00000020658.10, intron 17 of 22) 8599 ENSMUSG00000020658.10 ENSMUSG00000020658 ENSMUST00000218545 Efr3b protein_coding Interval_39061 chr12 84754344 84756020 + 0 NA exon (ENSMUSG00000021242.9, exon 4 of 4) protein_coding-exon (ENSMUSG00000021242.9, exon 4 of 4) 7358 ENSMUSG00000021242.9 ENSMUSG00000021242 ENSMUST00000221056 Npc2 protein_coding Interval_15933 chr10 59430636 59431080 + 0 NA intron (ENSMUSG00000009654.4, intron 1 of 2) protein_coding-intron (ENSMUSG00000009654.4, intron 5 of 8) 228 ENSMUSG00000009654.4 ENSMUSG00000009654 ENSMUST00000162493 Oit3 protein_coding Interval_43771 chr13 36279268 36280335 + 0 NA intron (ENSMUSG00000021420.13, intron 4 of 7) protein_coding-intron (ENSMUSG00000021420.13, intron 4 of 6) 27442 ENSMUSG00000114617.1 ENSMUSG00000114617 ENSMUST00000225563 Gm48766 TEC Interval_65115 chr16 19811016 19811621 + 0 NA Intergenic Intergenic 41449 ENSMUSG00000116980.1 ENSMUSG00000116980 ENSMUST00000232498 Gm49597 processed_pseudogene Interval_132676 chr5 147101456 147102597 + 0 NA promoter-TSS (ENSMUSG00000083988.1) processed_pseudogene-promoter-TSS (ENSMUSG00000083988.1) -973 ENSMUSG00000083988.1 ENSMUSG00000083988 ENSMUST00000120308 Rps10-ps4 processed_pseudogene Interval_144937 chr7 29013094 29013490 + 0 NA intron (ENSMUSG00000030592.18, intron 99 of 108) protein_coding-intron (ENSMUSG00000030592.18, intron 96 of 105) 11750 ENSMUSG00000037337.11 ENSMUSG00000037337 ENSMUST00000208784 Map4k1 protein_coding Interval_121975 chr5 12868261 12869174 + 0 NA Intergenic Intergenic -71653 ENSMUSG00000094310.1 ENSMUSG00000094310 ENSMUST00000180047 Gm23243 miRNA Interval_173258 chrX 75577721 75578305 + 0 NA TTS (ENSMUSG00000077406.1) snRNA-TTS (ENSMUSG00000077406.1) 218 ENSMUSG00000031202.5 ENSMUSG00000031202 ENSMUST00000033545 Rab39b protein_coding Interval_60227 chr15 68425385 68425757 + 0 NA Intergenic Intergenic -62395 ENSMUSG00000093387.1 ENSMUSG00000093387 ENSMUST00000175699 Gm20732 lincRNA Interval_160570 chr8 110767553 110767799 + 0 NA intron (ENSMUSG00000031750.15, intron 1 of 1) protein_coding-intron (ENSMUSG00000031750.15, intron 1 of 6) 12684 ENSMUSG00000090039.1 ENSMUSG00000090039 ENSMUST00000162828 Gm15894 antisense Interval_113595 chr4 56905693 56907307 + 0 NA intron (ENSMUSG00000055296.14, intron 9 of 16) protein_coding-intron (ENSMUSG00000055296.14, intron 10 of 17) -7142 ENSMUSG00000064595.1 ENSMUSG00000064595 ENSMUST00000082661 Gm22300 snoRNA Interval_104818 chr3 75202481 75203333 + 0 NA Intergenic Intergenic -37873 ENSMUSG00000034151.13 ENSMUSG00000034151 ENSMUST00000124618 Zbbx protein_coding Interval_58766 chr15 37954524 37954929 + 0 NA exon (ENSMUSG00000022292.16, exon 1 of 3) protein_coding-exon (ENSMUSG00000022292.16, exon 1 of 3) -5745 ENSMUSG00000115249.1 ENSMUSG00000115249 ENSMUST00000228937 Gm49085 antisense Interval_79138 chr18 24910514 24910865 + 0 NA intron (ENSMUSG00000034295.10, intron 5 of 24) protein_coding-intron (ENSMUSG00000034295.10, intron 5 of 26) 149526 ENSMUSG00000088920.1 ENSMUSG00000088920 ENSMUST00000158295 Gm24294 misc_RNA Interval_160013 chr8 105750524 105751455 + 0 NA intron (ENSMUSG00000013150.15, intron 1 of 3) protein_coding-intron (ENSMUSG00000013150.15, intron 1 of 2) 7641 ENSMUSG00000013150.15 ENSMUSG00000013150 ENSMUST00000135959 Gfod2 protein_coding Interval_98772 chr2 154857898 154858205 + 0 NA TTS (ENSMUSG00000027593.15) protein_coding-TTS (ENSMUSG00000027593.15) 34731 ENSMUSG00000074656.12 ENSMUSG00000074656 ENSMUST00000135524 Eif2s2 protein_coding Interval_99796 chr2 164956159 164958170 + 0 NA Intergenic Intergenic 2778 ENSMUSG00000017737.2 ENSMUSG00000017737 ENSMUST00000144917 Mmp9 protein_coding Interval_61960 chr15 85506881 85508307 + 0 NA Intergenic Intergenic -3218 ENSMUSG00000063548.3 ENSMUSG00000063548 ENSMUST00000079690 Gm4825 processed_pseudogene Interval_7020 chr1 122439119 122439976 + 0 NA Intergenic Intergenic -71002 ENSMUSG00000089274.1 ENSMUSG00000089274 ENSMUST00000158649 Gm24547 snRNA Interval_56604 chr14 120802892 120804228 + 0 NA Intergenic Intergenic 2724 ENSMUSG00000115835.1 ENSMUSG00000115835 ENSMUST00000227862 Gm41253 lincRNA Interval_89010 chr2 14437016 14437327 + 0 NA intron (ENSMUSG00000036949.16, intron 9 of 12) protein_coding-intron (ENSMUSG00000036949.16, intron 9 of 12) 48659 ENSMUSG00000036949.16 ENSMUSG00000036949 ENSMUST00000133258 Slc39a12 protein_coding Interval_137385 chr6 71844781 71845023 + 0 NA intron (ENSMUSG00000052337.15, intron 2 of 13) protein_coding-intron (ENSMUSG00000052337.15, intron 2 of 14) -13192 ENSMUSG00000108466.1 ENSMUSG00000108466 ENSMUST00000206975 Gm44771 TEC Interval_7286 chr1 128437145 128437830 + 0 NA Intergenic Intergenic -52553 ENSMUSG00000088196.1 ENSMUSG00000088196 ENSMUST00000157571 Gm23902 snoRNA Interval_56584 chr14 120500978 120502236 + 0 NA intron (ENSMUSG00000051615.14, intron 1 of 1) protein_coding-intron (ENSMUSG00000051615.14, intron 1 of 1) 23163 ENSMUSG00000051615.14 ENSMUSG00000051615 ENSMUST00000062117 Rap2a protein_coding Interval_33837 chr11 118897384 118898861 + 0 NA intron (ENSMUSG00000025576.17, intron 1 of 13) protein_coding-intron (ENSMUSG00000025576.17, intron 1 of 14) -30902 ENSMUSG00000084887.1 ENSMUSG00000084887 ENSMUST00000127327 Gm11749 sense_intronic Interval_43831 chr13 37456929 37457800 + 0 NA Intergenic Intergenic -4156 ENSMUSG00000099847.1 ENSMUSG00000099847 ENSMUST00000187093 Gm29458 lincRNA Interval_101277 chr2 180136202 180136716 + 0 NA intron (ENSMUSG00000039050.8, intron 2 of 2) protein_coding-intron (ENSMUSG00000039050.8, intron 1 of 13) 17055 ENSMUSG00000039050.8 ENSMUSG00000039050 ENSMUST00000124225 Osbpl2 protein_coding Interval_172988 chrX 60168563 60170897 + 0 NA intron (ENSMUSG00000031139.16, intron 1 of 27) protein_coding-intron (ENSMUSG00000031139.16, intron 1 of 27) -22030 ENSMUSG00000031139.16 ENSMUSG00000031139 ENSMUST00000033478 Mcf2 protein_coding Interval_121220 chr4 154142121 154142814 + 0 NA promoter-TSS (ENSMUSG00000029029.14) protein_coding-promoter-TSS (ENSMUSG00000029029.14) -2259 ENSMUSG00000029026.17 ENSMUSG00000029026 ENSMUST00000139634 Trp73 protein_coding Interval_36333 chr12 41484681 41486051 + 0 NA intron (ENSMUSG00000036295.5, intron 1 of 1) protein_coding-intron (ENSMUSG00000036295.5, intron 1 of 1) 1065 ENSMUSG00000036295.5 ENSMUSG00000036295 ENSMUST00000043884 Lrrn3 protein_coding Interval_30054 chr11 88905362 88906254 + 0 NA promoter-TSS (ENSMUSG00000087338.2) antisense-promoter-TSS (ENSMUSG00000087338.2) -120 ENSMUSG00000087338.2 ENSMUSG00000087338 ENSMUST00000139592 Scpep1os antisense Interval_72633 chr17 31202129 31202722 + 0 NA Intergenic Intergenic -4254 ENSMUSG00000024034.13 ENSMUSG00000024034 ENSMUST00000236793 Tmprss3 protein_coding Interval_104688 chr3 69429288 69429880 + 0 NA intron (ENSMUSG00000027784.10, intron 1 of 3) protein_coding-intron (ENSMUSG00000027784.10, intron 1 of 3) 2784 ENSMUSG00000090743.1 ENSMUSG00000090743 ENSMUST00000165161 Gm17213 processed_pseudogene Interval_93821 chr2 77202729 77203057 + 0 NA intron (ENSMUSG00000042272.17, intron 10 of 11) protein_coding-intron (ENSMUSG00000042272.17, intron 10 of 17) -3466 ENSMUSG00000042272.17 ENSMUSG00000042272 ENSMUST00000139021 Sestd1 protein_coding Interval_148611 chr7 83237262 83238286 + 0 NA Intergenic Intergenic 3233 ENSMUSG00000109335.1 ENSMUSG00000109335 ENSMUST00000208773 Gm44845 processed_pseudogene Interval_59601 chr15 55868412 55868646 + 0 NA intron (ENSMUSG00000060429.12, intron 1 of 1) protein_coding-intron (ENSMUSG00000060429.12, intron 1 of 6) 37781 ENSMUSG00000060429.12 ENSMUSG00000060429 ENSMUST00000140574 Sntb1 protein_coding Interval_33476 chr11 116738322 116738843 + 0 NA TTS (ENSMUSG00000078586.3) unprocessed_pseudogene-TTS (ENSMUSG00000078586.3) 11251 ENSMUSG00000078586.3 ENSMUSG00000078586 ENSMUST00000106377 Gm11735 unprocessed_pseudogene Interval_130007 chr5 123683029 123685116 + 0 NA promoter-TSS (ENSMUSG00000104694.1) TEC-promoter-TSS (ENSMUSG00000104694.1) -604 ENSMUSG00000104877.1 ENSMUSG00000104877 ENSMUST00000199851 Gm42651 TEC Interval_84712 chr19 15850557 15851228 + 0 NA Intergenic Intergenic 47834 ENSMUSG00000117995.1 ENSMUSG00000117995 ENSMUST00000237461 Gm50348 lincRNA Interval_42743 chr13 18847396 18847687 + 0 NA TTS (ENSMUSG00000041236.8) protein_coding-TTS (ENSMUSG00000041236.8) 67698 ENSMUSG00000041236.8 ENSMUSG00000041236 ENSMUST00000222102 Vps41 protein_coding Interval_38887 chr12 83620789 83621239 + 0 NA promoter-TSS (ENSMUSG00000113431.1) processed_pseudogene-promoter-TSS (ENSMUSG00000113431.1) 55 ENSMUSG00000113431.1 ENSMUSG00000113431 ENSMUST00000221586 Gm6722 processed_pseudogene Interval_34393 chr12 3829321 3829934 + 0 NA intron (ENSMUSG00000020661.15, intron 1 of 22) protein_coding-intron (ENSMUSG00000020661.15, intron 1 of 22) 22467 ENSMUSG00000020661.15 ENSMUSG00000020661 ENSMUST00000172913 Dnmt3a protein_coding Interval_8904 chr1 151961276 151961949 + 0 NA intron (ENSMUSG00000032666.16, intron 3 of 6) protein_coding-intron (ENSMUSG00000032666.16, intron 3 of 5) 86193 ENSMUSG00000100685.1 ENSMUSG00000100685 ENSMUST00000187716 Gm28610 antisense Interval_66498 chr16 34356494 34357305 + 0 NA TTS (ENSMUSG00000061751.16) protein_coding-TTS (ENSMUSG00000061751.16) -260871 ENSMUSG00000061751.16 ENSMUSG00000061751 ENSMUST00000132569 Kalrn protein_coding Interval_162084 chr8 124979291 124981191 + 0 NA Intergenic Intergenic -30917 ENSMUSG00000031987.6 ENSMUSG00000031987 ENSMUST00000034469 Egln1 protein_coding Interval_22071 chr11 6159290 6159658 + 0 NA intron (ENSMUSG00000053838.14, intron 1 of 2) protein_coding-intron (ENSMUSG00000053838.14, intron 2 of 5) 13562 ENSMUSG00000083022.1 ENSMUSG00000083022 ENSMUST00000117476 Rps15a-ps6 processed_pseudogene Interval_80027 chr18 36725355 36726530 + 0 NA TTS (ENSMUSG00000051439.7) protein_coding-TTS (ENSMUSG00000051439.7) 796 ENSMUSG00000051439.7 ENSMUSG00000051439 ENSMUST00000237042 Cd14 protein_coding Interval_173465 chrX 94194000 94194428 + 0 NA intron (ENSMUSG00000035150.15, intron 11 of 11) protein_coding-intron (ENSMUSG00000035150.15, intron 11 of 11) 18648 ENSMUSG00000035150.15 ENSMUSG00000035150 ENSMUST00000127963 Eif2s3x protein_coding Interval_140206 chr6 115544211 115545045 + 0 NA promoter-TSS (ENSMUSG00000042389.13) protein_coding-promoter-TSS (ENSMUSG00000042389.13) -7728 ENSMUSG00000107704.1 ENSMUSG00000107704 ENSMUST00000203752 Gm36355 lincRNA Interval_131274 chr5 136115960 136117125 + 0 NA promoter-TSS (ENSMUSG00000039771.13) protein_coding-promoter-TSS (ENSMUSG00000039771.13) -160 ENSMUSG00000039771.13 ENSMUSG00000039771 ENSMUST00000111129 Polr2j protein_coding Interval_156527 chr8 49573310 49574881 + 0 NA Intergenic Intergenic 52671 ENSMUSG00000110688.1 ENSMUSG00000110688 ENSMUST00000212088 Gm45696 TEC Interval_75978 chr17 74052522 74053813 + 0 NA intron (ENSMUSG00000117038.1, intron 3 of 3) processed_transcript-intron (ENSMUSG00000117038.1, intron 3 of 3) -5251 ENSMUSG00000038541.8 ENSMUSG00000038541 ENSMUST00000043458 Srd5a2 protein_coding Interval_103329 chr3 38845460 38845872 + 0 NA Intergenic Intergenic 42593 ENSMUSG00000086181.1 ENSMUSG00000086181 ENSMUST00000153659 C230034O21Rik antisense Interval_83060 chr18 80952771 80953340 + 0 NA Intergenic Intergenic -27250 ENSMUSG00000092973.1 ENSMUSG00000092973 ENSMUST00000175232 Gm25071 miRNA Interval_109028 chr3 135263800 135264827 + 0 NA exon (ENSMUSG00000045328.11, exon 42 of 46) protein_coding-exon (ENSMUSG00000045328.11, exon 42 of 46) 5071 ENSMUSG00000045328.11 ENSMUSG00000045328 ENSMUST00000199497 Cenpe protein_coding Interval_112569 chr4 43290995 43291366 + 0 NA intron (ENSMUSG00000028457.18, intron 2 of 8) protein_coding-intron (ENSMUSG00000028457.18, intron 2 of 14) 23995 ENSMUSG00000028457.18 ENSMUSG00000028457 ENSMUST00000102953 Atp8b5 protein_coding Interval_25793 chr11 51755752 51757102 + 0 NA promoter-TSS (ENSMUSG00000036391.16) protein_coding-promoter-TSS (ENSMUSG00000036391.16) 7207 ENSMUSG00000036391.16 ENSMUSG00000036391 ENSMUST00000154325 Sec24a protein_coding Interval_28777 chr11 78261232 78262824 + 0 NA promoter-TSS (ENSMUSG00000010277.7) protein_coding-promoter-TSS (ENSMUSG00000010277.7) 11607 ENSMUSG00000002064.10 ENSMUSG00000002064 ENSMUST00000133020 Sdf2 protein_coding Interval_8775 chr1 150982631 150982831 + 0 NA intron (ENSMUSG00000066842.18, intron 1 of 1) protein_coding-intron (ENSMUSG00000066842.18, intron 1 of 106) -18309 ENSMUSG00000099622.1 ENSMUSG00000099622 ENSMUST00000191173 Gm29188 lincRNA Interval_157523 chr8 71194609 71195771 + 0 NA Intergenic Intergenic -28759 ENSMUSG00000110664.1 ENSMUSG00000110664 ENSMUST00000212311 Aprt-ps processed_pseudogene Interval_43492 chr13 31853977 31854177 + 0 NA intron (ENSMUSG00000038372.14, intron 9 of 10) protein_coding-intron (ENSMUSG00000038372.14, intron 9 of 10) -19341 ENSMUSG00000113119.1 ENSMUSG00000113119 ENSMUST00000221416 Gm48883 TEC Interval_97986 chr2 146455517 146456386 + 0 NA intron (ENSMUSG00000037110.20, intron 4 of 41) protein_coding-intron (ENSMUSG00000037110.20, intron 4 of 15) 56393 ENSMUSG00000037110.20 ENSMUSG00000037110 ENSMUST00000124709 Ralgapa2 protein_coding Interval_152640 chr7 135637963 135638163 + 0 NA exon (ENSMUSG00000097471.8, exon 5 of 5) antisense-exon (ENSMUSG00000097471.8, exon 5 of 5) 14220 ENSMUSG00000097471.8 ENSMUSG00000097471 ENSMUST00000210953 5830432E09Rik antisense Interval_86429 chr19 40414467 40415384 + 0 NA intron (ENSMUSG00000025006.18, intron 1 of 21) protein_coding-intron (ENSMUSG00000025006.18, intron 2 of 3) -38051 ENSMUSG00000025006.18 ENSMUSG00000025006 ENSMUST00000225293 Sorbs1 protein_coding Interval_83046 chr18 80739874 80740101 + 0 NA intron (ENSMUSG00000024566.10, intron 26 of 28) protein_coding-intron (ENSMUSG00000024566.10, intron 26 of 29) 20000 ENSMUSG00000024566.10 ENSMUSG00000024566 ENSMUST00000225345 Atp9b protein_coding Interval_149741 chr7 101061009 101062393 + 0 NA promoter-TSS (ENSMUSG00000109171.1) processed_pseudogene-promoter-TSS (ENSMUSG00000109171.1) -226 ENSMUSG00000109171.1 ENSMUSG00000109171 ENSMUST00000207053 Gm5735 processed_pseudogene Interval_67174 chr16 44146143 44146360 + 0 NA intron (ENSMUSG00000022698.17, intron 2 of 5) protein_coding-intron (ENSMUSG00000022698.17, intron 1 of 4) 6398 ENSMUSG00000022698.17 ENSMUSG00000022698 ENSMUST00000063542 Naa50 protein_coding Interval_42971 chr13 21980908 21982141 + 0 NA promoter-TSS (ENSMUSG00000016982.6) protein_coding-promoter-TSS (ENSMUSG00000016982.6) 330 ENSMUSG00000016982.6 ENSMUSG00000016982 ENSMUST00000017126 Pom121l2 protein_coding Interval_39059 chr12 84752656 84752924 + 0 NA Intergenic Intergenic 9750 ENSMUSG00000021242.9 ENSMUSG00000021242 ENSMUST00000221056 Npc2 protein_coding Interval_19934 chr10 111361831 111362482 + 0 NA Intergenic Intergenic 25032 ENSMUSG00000112246.1 ENSMUSG00000112246 ENSMUST00000219123 Gm40761 lincRNA Interval_142315 chr6 140605657 140606750 + 0 NA Intergenic Intergenic 16220 ENSMUSG00000107750.1 ENSMUSG00000107750 ENSMUST00000204392 Gm44013 TEC Interval_53908 chr14 63268084 63269587 + 0 NA intron (ENSMUSG00000021944.15, intron 1 of 1) protein_coding-intron (ENSMUSG00000021944.15, intron 1 of 1) 2289 ENSMUSG00000021944.15 ENSMUSG00000021944 ENSMUST00000156782 Gata4 protein_coding Interval_67243 chr16 44702643 44703260 + 0 NA Intergenic Intergenic -21406 ENSMUSG00000036208.13 ENSMUSG00000036208 ENSMUST00000132610 Nepro protein_coding Interval_45682 chr13 56885331 56886275 + 0 NA intron (ENSMUSG00000021541.14, intron 2 of 10) protein_coding-intron (ENSMUSG00000021541.14, intron 2 of 11) 9934 ENSMUSG00000021541.14 ENSMUSG00000021541 ENSMUST00000173817 Trpc7 protein_coding Interval_140509 chr6 119058991 119059191 + 0 NA intron (ENSMUSG00000051331.16, intron 1 of 3) protein_coding-intron (ENSMUSG00000051331.16, intron 1 of 46) -133265 ENSMUSG00000041477.14 ENSMUSG00000041477 ENSMUST00000127059 Dcp1b protein_coding Interval_27960 chr11 71578622 71579494 + 0 NA Intergenic Intergenic -5520 ENSMUSG00000111450.1 ENSMUSG00000111450 ENSMUST00000215428 Gm33351 lincRNA Interval_164204 chr9 32487188 32487442 + 0 NA intron (ENSMUSG00000016087.13, intron 1 of 6) protein_coding-intron (ENSMUSG00000016087.13, intron 1 of 8) -6938 ENSMUSG00000103151.1 ENSMUSG00000103151 ENSMUST00000192646 Gm38292 TEC Interval_151169 chr7 118959775 118960291 + 0 NA intron (ENSMUSG00000073856.11, intron 7 of 7) protein_coding-intron (ENSMUSG00000073856.11, intron 8 of 8) 9653 ENSMUSG00000109517.1 ENSMUSG00000109517 ENSMUST00000208287 Gm44763 antisense Interval_136458 chr6 54654542 54654735 + 0 NA Intergenic Intergenic -26986 ENSMUSG00000038065.13 ENSMUSG00000038065 ENSMUST00000185518 Mturn protein_coding Interval_87782 chr19 55838330 55838651 + 0 NA intron (ENSMUSG00000024985.20, intron 5 of 14) protein_coding-intron (ENSMUSG00000024985.20, intron 4 of 11) -3182 ENSMUSG00000099746.1 ENSMUSG00000099746 ENSMUST00000190974 Ppnr sense_intronic Interval_127060 chr5 100013567 100013825 + 0 NA Intergenic Intergenic 25173 ENSMUSG00000029328.15 ENSMUSG00000029328 ENSMUST00000151323 Hnrnpdl protein_coding Interval_7903 chr1 134492134 134492742 + 0 NA Intergenic Intergenic -2210 ENSMUSG00000042229.9 ENSMUSG00000042229 ENSMUST00000047978 Rabif protein_coding Interval_172857 chrX 52188799 52189806 + 0 NA Intergenic Intergenic -24050 ENSMUSG00000031119.4 ENSMUSG00000031119 ENSMUST00000033450 Gpc4 protein_coding Interval_154572 chr8 20964423 20964828 + 0 NA Intergenic Intergenic -19915 ENSMUSG00000079120.3 ENSMUSG00000079120 ENSMUST00000110758 AY761185 protein_coding Interval_68634 chr16 82305028 82305234 + 0 NA Intergenic Intergenic 132840 ENSMUSG00000116937.1 ENSMUSG00000116937 ENSMUST00000232378 Gm41480 lincRNA Interval_162500 chr9 3370799 3371201 + 0 NA intron (ENSMUSG00000025899.14, intron 11 of 12) protein_coding-intron (ENSMUSG00000025899.14, intron 10 of 11) -8207 ENSMUSG00000025899.14 ENSMUSG00000025899 ENSMUST00000212955 Alkbh8 protein_coding Interval_81879 chr18 65583765 65584224 + 0 NA promoter-TSS (ENSMUSG00000042439.13) protein_coding-promoter-TSS (ENSMUSG00000042439.13) 2548 ENSMUSG00000042439.13 ENSMUSG00000042439 ENSMUST00000183303 Zfp532 protein_coding Interval_126515 chr5 89455317 89456203 + 0 NA intron (ENSMUSG00000035540.12, intron 1 of 12) protein_coding-intron (ENSMUSG00000035540.12, intron 1 of 12) -20132 ENSMUSG00000035540.12 ENSMUSG00000035540 ENSMUST00000200534 Gc protein_coding Interval_149141 chr7 94644434 94645694 + 0 NA intron (ENSMUSG00000108532.1, intron 2 of 2) lincRNA-intron (ENSMUSG00000108532.1, intron 2 of 2) -42656 ENSMUSG00000108433.1 ENSMUSG00000108433 ENSMUST00000205372 Gm19761 processed_pseudogene Interval_19243 chr10 95729672 95731327 + 0 NA promoter-TSS (ENSMUSG00000112188.1) lincRNA-promoter-TSS (ENSMUSG00000112188.1) -728 ENSMUSG00000112188.1 ENSMUSG00000112188 ENSMUST00000219583 Gm47708 lincRNA Interval_103640 chr3 51353263 51354226 + 0 NA Intergenic Intergenic -16478 ENSMUSG00000103654.1 ENSMUSG00000103654 ENSMUST00000191618 Gm37203 processed_pseudogene Interval_68020 chr16 63872296 63873069 + 0 NA Intergenic Intergenic -8525 ENSMUSG00000052504.7 ENSMUSG00000052504 ENSMUST00000232370 Epha3 protein_coding Interval_154580 chr8 21037925 21038260 + 0 NA Intergenic Intergenic 2268 ENSMUSG00000094406.1 ENSMUSG00000094406 ENSMUST00000101848 Gm23142 snRNA Interval_160915 chr8 114999987 115000198 + 0 NA intron (ENSMUSG00000004637.15, intron 8 of 8) protein_coding-intron (ENSMUSG00000004637.15, intron 8 of 8) 52821 ENSMUSG00000088428.1 ENSMUSG00000088428 ENSMUST00000157803 Gm22556 rRNA Interval_112208 chr4 35707970 35709431 + 0 NA exon (ENSMUSG00000045083.14, exon 3 of 3) protein_coding-exon (ENSMUSG00000045083.14, exon 3 of 3) 136504 ENSMUSG00000045083.14 ENSMUSG00000045083 ENSMUST00000125128 Lingo2 protein_coding Interval_18386 chr10 85472815 85473136 + 0 NA intron (ENSMUSG00000020042.15, intron 1 of 16) protein_coding-intron (ENSMUSG00000020042.15, intron 1 of 9) 139074 ENSMUSG00000087895.1 ENSMUSG00000087895 ENSMUST00000157270 Gm25281 miRNA Interval_86005 chr19 34868385 34868980 + 0 NA intron (ENSMUSG00000033610.16, intron 1 of 6) protein_coding-intron (ENSMUSG00000033610.16, intron 1 of 6) 9171 ENSMUSG00000033610.16 ENSMUSG00000033610 ENSMUST00000237577 Pank1 protein_coding Interval_102856 chr3 32328266 32328644 + 0 NA Intergenic Intergenic 37559 ENSMUSG00000027663.12 ENSMUSG00000027663 ENSMUST00000195055 Zmat3 protein_coding Interval_138729 chr6 91487355 91487584 + 0 NA exon (ENSMUSG00000030095.10, exon 12 of 12) protein_coding-exon (ENSMUSG00000030095.10, exon 12 of 12) 13718 ENSMUSG00000030095.10 ENSMUSG00000030095 ENSMUST00000144246 Tmem43 protein_coding Interval_167704 chr9 72168953 72170529 + 0 NA Intergenic Intergenic 5217 ENSMUSG00000061390.6 ENSMUSG00000061390 ENSMUST00000183770 Uba52-ps processed_pseudogene Interval_143755 chr7 16097849 16099181 + 0 NA promoter-TSS (ENSMUSG00000006024.13) protein_coding-promoter-TSS (ENSMUSG00000006024.13) -15129 ENSMUSG00000006024.13 ENSMUSG00000006024 ENSMUST00000140640 Napa protein_coding Interval_170197 chr9 106127095 106127626 + 0 NA promoter-TSS (ENSMUSG00000100795.2) lincRNA-promoter-TSS (ENSMUSG00000100795.2) -262 ENSMUSG00000100795.2 ENSMUSG00000100795 ENSMUST00000213710 Gm29208 lincRNA Interval_146776 chr7 50543040 50544177 + 0 NA intron (ENSMUSG00000085265.1, intron 3 of 3) protein_coding-intron (ENSMUSG00000055409.14, intron 13 of 19) 32363 ENSMUSG00000085265.1 ENSMUSG00000085265 ENSMUST00000136672 Nell1os antisense Interval_100127 chr2 167210884 167212792 + 0 NA intron (ENSMUSG00000017969.13, intron 6 of 9) protein_coding-intron (ENSMUSG00000017969.13, intron 6 of 9) -3422 ENSMUSG00000017969.13 ENSMUSG00000017969 ENSMUST00000136271 Ptgis protein_coding Interval_164131 chr9 31821084 31821595 + 0 NA Intergenic Intergenic 38355 ENSMUSG00000110778.1 ENSMUSG00000110778 ENSMUST00000217443 Gm8171 processed_pseudogene Interval_129610 chr5 121305389 121307575 + 0 NA intron (ENSMUSG00000042744.16, intron 2 of 19) protein_coding-intron (ENSMUSG00000042744.16, intron 27 of 75) 20252 ENSMUSG00000042744.16 ENSMUSG00000042744 ENSMUST00000130655 Hectd4 protein_coding Interval_112038 chr4 33403036 33403671 + 0 NA intron (ENSMUSG00000028274.17, intron 12 of 15) protein_coding-intron (ENSMUSG00000028274.17, intron 12 of 15) -34728 ENSMUSG00000098310.1 ENSMUSG00000098310 ENSMUST00000183962 Mir8118 miRNA Interval_3488 chr1 58844992 58845541 + 0 NA intron (ENSMUSG00000026029.14, intron 9 of 9) protein_coding-intron (ENSMUSG00000026029.14, intron 8 of 8) 47483 ENSMUSG00000102719.1 ENSMUSG00000102719 ENSMUST00000194726 Gm37760 TEC Interval_117363 chr4 123254193 123255131 + 0 NA Intergenic Intergenic -3384 ENSMUSG00000083720.1 ENSMUSG00000083720 ENSMUST00000118690 Gm12901 processed_pseudogene Interval_139851 chr6 111371601 111373230 + 0 NA intron (ENSMUSG00000056755.13, intron 9 of 9) protein_coding-intron (ENSMUSG00000056755.13, intron 8 of 10) -123329 ENSMUSG00000056755.13 ENSMUSG00000056755 ENSMUST00000174310 Grm7 protein_coding Interval_3536 chr1 59433146 59433674 + 0 NA Intergenic Intergenic 16092 ENSMUSG00000104502.1 ENSMUSG00000104502 ENSMUST00000195013 Gm37737 TEC Interval_2294 chr1 37858345 37858637 + 0 NA intron (ENSMUSG00000060771.15, intron 1 of 17) protein_coding-intron (ENSMUSG00000060771.15, intron 1 of 19) 6345 ENSMUSG00000060771.15 ENSMUSG00000060771 ENSMUST00000134024 Tsga10 protein_coding Interval_93274 chr2 71624556 71627077 + 0 NA Intergenic Intergenic -79866 ENSMUSG00000023391.8 ENSMUSG00000023391 ENSMUST00000134249 Dlx2 protein_coding Interval_104868 chr3 76734305 76734499 + 0 NA Intergenic Intergenic -87657 ENSMUSG00000103702.1 ENSMUSG00000103702 ENSMUST00000195775 Gm37290 processed_pseudogene Interval_3392 chr1 57906894 57907224 + 0 NA intron (ENSMUSG00000038305.15, intron 8 of 9) protein_coding-intron (ENSMUSG00000038305.15, intron 7 of 11) 10052 ENSMUSG00000091283.1 ENSMUSG00000091283 ENSMUST00000172128 Gm17234 antisense Interval_122633 chr5 24360706 24361585 + 0 NA Intergenic Intergenic -3665 ENSMUSG00000028978.12 ENSMUSG00000028978 ENSMUST00000030834 Nos3 protein_coding Interval_126985 chr5 99157981 99158481 + 0 NA intron (ENSMUSG00000105579.2, intron 3 of 8) lincRNA-intron (ENSMUSG00000105579.2, intron 3 of 8) 13190 ENSMUSG00000105579.2 ENSMUSG00000105579 ENSMUST00000198339 Gm43251 lincRNA Interval_160278 chr8 107647888 107648508 + 0 NA Intergenic Intergenic 42646 ENSMUSG00000110508.1 ENSMUSG00000110508 ENSMUST00000212585 Gm8940 processed_pseudogene Interval_50689 chr14 18269368 18271644 + 0 NA promoter-TSS (ENSMUSG00000021772.15) protein_coding-promoter-TSS (ENSMUSG00000021772.15) -387 ENSMUSG00000012405.16 ENSMUSG00000012405 ENSMUST00000147121 Rpl15 protein_coding Interval_72019 chr17 27592190 27592724 + 0 NA intron (ENSMUSG00000117338.1, intron 6 of 8) protein_coding-intron (ENSMUSG00000024213.14, intron 2 of 4) 4758 ENSMUSG00000024213.14 ENSMUSG00000024213 ENSMUST00000146321 Nudt3 protein_coding Interval_53464 chr14 57692588 57693058 + 0 NA TTS (ENSMUSG00000021959.16) protein_coding-TTS (ENSMUSG00000021959.16) -4986 ENSMUSG00000064525.1 ENSMUSG00000064525 ENSMUST00000082591 Gm26440 snoRNA Interval_70223 chr17 6808466 6809618 + 0 NA intron (ENSMUSG00000116644.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000116644.1, intron 1 of 1) 533 ENSMUSG00000116644.1 ENSMUSG00000116644 ENSMUST00000231816 4933426B08Rik lincRNA Interval_160828 chr8 113057722 113058083 + 0 NA Intergenic Intergenic -9360 ENSMUSG00000110541.1 ENSMUSG00000110541 ENSMUST00000212238 Gm10280 lincRNA Interval_50640 chr14 17066617 17067061 + 0 NA Intergenic Intergenic -38722 ENSMUSG00000114296.1 ENSMUSG00000114296 ENSMUST00000225472 Gm18927 processed_pseudogene Interval_71887 chr17 26794643 26795179 + 0 NA Intergenic Intergenic 8555 ENSMUSG00000024191.15 ENSMUSG00000024191 ENSMUST00000131362 Bnip1 protein_coding Interval_113766 chr4 58453105 58453441 + 0 NA intron (ENSMUSG00000038668.14, intron 3 of 3) protein_coding-intron (ENSMUSG00000038668.14, intron 3 of 3) -12175 ENSMUSG00000093293.1 ENSMUSG00000093293 ENSMUST00000175552 Mir3095 miRNA Interval_21681 chr11 3648350 3649902 + 0 NA promoter-TSS (ENSMUSG00000034543.15) protein_coding-promoter-TSS (ENSMUSG00000034543.15) -633 ENSMUSG00000034543.15 ENSMUSG00000034543 ENSMUST00000128666 Morc2a protein_coding Interval_121297 chr4 154802127 154802585 + 0 NA Intergenic Intergenic -35103 ENSMUSG00000046637.3 ENSMUSG00000046637 ENSMUST00000137684 Ttc34 protein_coding Interval_28073 chr11 72642492 72643218 + 0 NA intron (ENSMUSG00000020794.13, intron 1 of 4) protein_coding-intron (ENSMUSG00000020794.13, intron 1 of 5) -6070 ENSMUSG00000092725.1 ENSMUSG00000092725 ENSMUST00000174984 Gm25678 miRNA Interval_9575 chr1 159565693 159565936 + 0 NA intron (ENSMUSG00000015829.13, intron 1 of 1) protein_coding-intron (ENSMUSG00000015829.13, intron 1 of 22) -29334 ENSMUSG00000103225.1 ENSMUSG00000103225 ENSMUST00000194545 Gm37731 TEC Interval_60168 chr15 66910266 66910569 + 0 NA intron (ENSMUSG00000005124.10, intron 2 of 4) protein_coding-intron (ENSMUSG00000005124.10, intron 2 of 4) 1153 ENSMUSG00000005124.10 ENSMUSG00000005124 ENSMUST00000133863 Ccn4 protein_coding Interval_90278 chr2 29500681 29501828 + 0 NA TTS (ENSMUSG00000026799.15) protein_coding-TTS (ENSMUSG00000026799.15) 3042 ENSMUSG00000082413.1 ENSMUSG00000082413 ENSMUST00000117074 Gm13401 processed_pseudogene Interval_11161 chr1 179753162 179753547 + 0 NA promoter-TSS (ENSMUSG00000026491.13) protein_coding-promoter-TSS (ENSMUSG00000026491.13) 48718 ENSMUSG00000026491.13 ENSMUSG00000026491 ENSMUST00000147137 Ahctf1 protein_coding Interval_31131 chr11 98338540 98339437 + 0 NA Intergenic Intergenic -9340 ENSMUSG00000038255.6 ENSMUSG00000038255 ENSMUST00000041685 Neurod2 protein_coding Interval_143903 chr7 17046766 17047611 + 0 NA intron (ENSMUSG00000004328.15, intron 8 of 14) protein_coding-intron (ENSMUSG00000004328.15, intron 8 of 14) -11346 ENSMUSG00000108807.1 ENSMUSG00000108807 ENSMUST00000206290 4833404L02Rik TEC Interval_39458 chr12 87775751 87776279 + 0 NA promoter-TSS (ENSMUSG00000095724.1) protein_coding-promoter-TSS (ENSMUSG00000095724.1) -260 ENSMUSG00000095724.1 ENSMUSG00000095724 ENSMUST00000164517 Gm21319 protein_coding Interval_105523 chr3 87243318 87244835 + 0 NA Intergenic Intergenic 19662 ENSMUSG00000015852.13 ENSMUSG00000015852 ENSMUST00000146512 Fcrls protein_coding Interval_149657 chr7 100448988 100449199 + 0 NA intron (ENSMUSG00000099137.1, intron 1 of 1) protein_coding-intron (ENSMUSG00000047248.20, intron 29 of 32) -9367 ENSMUSG00000102241.1 ENSMUSG00000102241 ENSMUST00000193553 Gm37716 TEC Interval_42087 chr13 8480457 8480762 + 0 NA intron (ENSMUSG00000052551.16, intron 1 of 10) protein_coding-intron (ENSMUSG00000052551.16, intron 1 of 9) -72411 ENSMUSG00000113742.1 ENSMUSG00000113742 ENSMUST00000220604 Gm48262 TEC Interval_141708 chr6 133916165 133916362 + 0 NA Intergenic Intergenic 16146 ENSMUSG00000107771.1 ENSMUSG00000107771 ENSMUST00000203939 Gm8956 processed_pseudogene Interval_26249 chr11 55426167 55426388 + 0 NA Intergenic Intergenic -5952 ENSMUSG00000018593.13 ENSMUSG00000018593 ENSMUST00000125787 Sparc protein_coding Interval_411 chr1 5017972 5020902 + 0 NA promoter-TSS (ENSMUSG00000002459.17) protein_coding-promoter-TSS (ENSMUSG00000002459.17) -58 ENSMUSG00000002459.17 ENSMUSG00000002459 ENSMUST00000133521 Rgs20 protein_coding Interval_144109 chr7 19460644 19461749 + 0 NA promoter-TSS (ENSMUSG00000065388.1) snRNA-promoter-TSS (ENSMUSG00000065388.1) -261 ENSMUSG00000065388.1 ENSMUSG00000065388 ENSMUST00000083454 Gm23099 snRNA Interval_111430 chr4 21587389 21587854 + 0 NA Intergenic Intergenic -38759 ENSMUSG00000083654.1 ENSMUSG00000083654 ENSMUST00000118187 Gm11875 processed_pseudogene Interval_43076 chr13 23662569 23662856 + 0 NA promoter-TSS (ENSMUSG00000084753.1) snRNA-promoter-TSS (ENSMUSG00000084753.1) -309 ENSMUSG00000084753.1 ENSMUSG00000084753 ENSMUST00000122804 Gm22452 snRNA Interval_114103 chr4 63459309 63459549 + 0 NA TTS (ENSMUSG00000039137.18) protein_coding-TTS (ENSMUSG00000039137.18) -26107 ENSMUSG00000039137.18 ENSMUSG00000039137 ENSMUST00000140720 Whrn protein_coding Interval_98703 chr2 154420943 154421703 + 0 NA Intergenic Intergenic -13343 ENSMUSG00000027488.12 ENSMUSG00000027488 ENSMUST00000133018 Snta1 protein_coding Interval_62212 chr15 88863579 88864329 + 0 NA promoter-TSS (ENSMUSG00000035828.11) protein_coding-promoter-TSS (ENSMUSG00000035828.11) -966 ENSMUSG00000035828.11 ENSMUSG00000035828 ENSMUST00000229969 Pim3 protein_coding Interval_107987 chr3 119028411 119029330 + 0 NA intron (ENSMUSG00000033308.16, intron 13 of 22) protein_coding-intron (ENSMUSG00000033308.16, intron 13 of 22) 160626 ENSMUSG00000106542.1 ENSMUSG00000106542 ENSMUST00000197510 Gm43410 TEC Interval_48601 chr13 100596513 100597274 + 0 NA TTS (ENSMUSG00000021636.15) protein_coding-TTS (ENSMUSG00000021636.15) -7466 ENSMUSG00000065678.1 ENSMUSG00000065678 ENSMUST00000083744 Gm24261 snRNA Interval_1295 chr1 19262482 19262838 + 0 NA Intergenic Intergenic 19935 ENSMUSG00000100538.1 ENSMUSG00000100538 ENSMUST00000189218 Gm28340 lincRNA Interval_151014 chr7 117709236 117711003 + 0 NA Intergenic Intergenic -66675 ENSMUSG00000088116.1 ENSMUSG00000088116 ENSMUST00000157491 Gm24063 miRNA Interval_125603 chr5 72514742 72515256 + 0 NA intron (ENSMUSG00000072889.9, intron 2 of 2) protein_coding-intron (ENSMUSG00000072889.9, intron 22 of 22) -10560 ENSMUSG00000005220.10 ENSMUSG00000005220 ENSMUST00000176439 Corin protein_coding Interval_54147 chr14 65730537 65731176 + 0 NA exon (ENSMUSG00000022032.14, exon 4 of 9) protein_coding-exon (ENSMUSG00000022032.14, exon 4 of 9) 54379 ENSMUSG00000022032.14 ENSMUSG00000022032 ENSMUST00000154373 Scara5 protein_coding Interval_150671 chr7 113222810 113223019 + 0 NA intron (ENSMUSG00000055116.8, intron 1 of 20) protein_coding-intron (ENSMUSG00000055116.8, intron 1 of 19) -11709 ENSMUSG00000055116.8 ENSMUSG00000055116 ENSMUST00000211547 Arntl protein_coding Interval_147593 chr7 68748547 68749841 + 0 NA promoter-TSS (ENSMUSG00000042659.15) protein_coding-promoter-TSS (ENSMUSG00000042659.15) -6 ENSMUSG00000042659.15 ENSMUSG00000042659 ENSMUST00000118110 Arrdc4 protein_coding Interval_62359 chr15 91028803 91029052 + 0 NA intron (ENSMUSG00000022629.17, intron 1 of 32) protein_coding-intron (ENSMUSG00000022629.17, intron 1 of 35) -45235 ENSMUSG00000115952.1 ENSMUSG00000115952 ENSMUST00000230093 Gm18814 processed_pseudogene Interval_88944 chr2 13298609 13299320 + 0 NA intron (ENSMUSG00000026726.10, intron 59 of 66) protein_coding-intron (ENSMUSG00000026726.10, intron 59 of 66) 27362 ENSMUSG00000086358.2 ENSMUSG00000086358 ENSMUST00000193685 Gm13270 processed_transcript Interval_96097 chr2 119732651 119733773 + 0 NA exon (ENSMUSG00000027304.9, exon 18 of 18) protein_coding-exon (ENSMUSG00000027304.9, exon 18 of 18) 7744 ENSMUSG00000064722.1 ENSMUSG00000064722 ENSMUST00000082788 Gm25857 snoRNA Interval_85553 chr19 28478176 28478569 + 0 NA intron (ENSMUSG00000052942.13, intron 4 of 10) protein_coding-intron (ENSMUSG00000052942.13, intron 3 of 9) 104922 ENSMUSG00000089952.1 ENSMUSG00000089952 ENSMUST00000162380 4933413C19Rik sense_intronic Interval_125872 chr5 75189136 75190167 + 0 NA intron (ENSMUSG00000029231.15, intron 21 of 22) protein_coding-intron (ENSMUSG00000029231.15, intron 21 of 22) 12820 ENSMUSG00000099060.1 ENSMUSG00000099060 ENSMUST00000183797 Mir7025 miRNA Interval_117837 chr4 126519861 126520222 + 0 NA intron (ENSMUSG00000042500.11, intron 3 of 17) protein_coding-intron (ENSMUSG00000042500.11, intron 3 of 17) -1628 ENSMUSG00000083461.1 ENSMUSG00000083461 ENSMUST00000119352 Gm12935 processed_pseudogene Interval_14469 chr10 34151966 34152262 + 0 NA exon (ENSMUSG00000039497.8, exon 6 of 6) protein_coding-exon (ENSMUSG00000039497.8, exon 6 of 6) -24130 ENSMUSG00000046031.7 ENSMUSG00000046031 ENSMUST00000062784 Calhm6 protein_coding Interval_6661 chr1 118608693 118609036 + 0 NA exon (ENSMUSG00000064302.13, exon 40 of 40) protein_coding-exon (ENSMUSG00000064302.13, exon 40 of 40) -19081 ENSMUSG00000026380.10 ENSMUSG00000026380 ENSMUST00000027629 Tfcp2l1 protein_coding Interval_133565 chr6 6862675 6864936 + 0 NA promoter-TSS (ENSMUSG00000029754.13) protein_coding-promoter-TSS (ENSMUSG00000029754.13) 7 ENSMUSG00000029754.13 ENSMUSG00000029754 ENSMUST00000172943 Dlx6 protein_coding Interval_39942 chr12 99964319 99966811 + 0 NA exon (ENSMUSG00000045404.16, exon 2 of 3) protein_coding-exon (ENSMUSG00000045404.16, exon 2 of 3) 1066 ENSMUSG00000045404.16 ENSMUSG00000045404 ENSMUST00000049788 Kcnk13 protein_coding Interval_45875 chr13 58673312 58673553 + 0 NA Intergenic Intergenic -4593 ENSMUSG00000114380.1 ENSMUSG00000114380 ENSMUST00000225253 Gm47942 processed_pseudogene Interval_9683 chr1 161003734 161006827 + 0 NA exon (ENSMUSG00000026715.12, exon 8 of 8) protein_coding-exon (ENSMUSG00000026715.12, exon 8 of 8) -3435 ENSMUSG00000103680.1 ENSMUSG00000103680 ENSMUST00000194570 Gm37072 TEC Interval_130645 chr5 129415130 129415791 + 0 NA Intergenic Intergenic 51340 ENSMUSG00000104681.1 ENSMUSG00000104681 ENSMUST00000199076 Gm43001 lincRNA Interval_116637 chr4 116208470 116209546 + 0 NA intron (ENSMUSG00000111410.1, intron 1 of 9) protein_coding-intron (ENSMUSG00000111410.1, intron 1 of 9) -8056 ENSMUSG00000081459.3 ENSMUSG00000081459 ENSMUST00000121281 Llph-ps1 processed_pseudogene Interval_49529 chr13 112755122 112755966 + 0 NA Intergenic Intergenic -9304 ENSMUSG00000114286.1 ENSMUSG00000114286 ENSMUST00000225832 Gm47850 lincRNA Interval_92516 chr2 60247732 60248025 + 0 NA TTS (ENSMUSG00000026977.17) protein_coding-TTS (ENSMUSG00000026977.17) 27696 ENSMUSG00000080198.2 ENSMUSG00000080198 ENSMUST00000116410 Rpl10a-ps4 processed_pseudogene Interval_165781 chr9 52809428 52810507 + 0 NA Intergenic Intergenic 45956 ENSMUSG00000110833.1 ENSMUSG00000110833 ENSMUST00000216112 Gm47981 processed_pseudogene Interval_27121 chr11 63124158 63124750 + 0 NA Intergenic Intergenic -8349 ENSMUSG00000018217.12 ENSMUSG00000018217 ENSMUST00000108700 Pmp22 protein_coding Interval_27709 chr11 69589404 69589696 + 0 NA exon (ENSMUSG00000059552.13, exon 5 of 5) protein_coding-exon (ENSMUSG00000059552.13, exon 5 of 5) 9191 ENSMUSG00000059552.13 ENSMUSG00000059552 ENSMUST00000130540 Trp53 protein_coding Interval_172294 chrX 12543051 12544610 + 0 NA Intergenic Intergenic -43971 ENSMUSG00000031007.2 ENSMUSG00000031007 ENSMUST00000033313 Atp6ap2 protein_coding Interval_76450 chr17 80276797 80277103 + 0 NA intron (ENSMUSG00000035051.15, intron 2 of 22) protein_coding-intron (ENSMUSG00000035051.15, intron 2 of 22) -9108 ENSMUSG00000035051.15 ENSMUSG00000035051 ENSMUST00000234703 Dhx57 protein_coding Interval_19474 chr10 99864239 99864580 + 0 NA TTS (ENSMUSG00000112463.1) processed_pseudogene-TTS (ENSMUSG00000112463.1) 1611 ENSMUSG00000112463.1 ENSMUSG00000112463 ENSMUST00000219892 Gm47579 processed_pseudogene Interval_37002 chr12 56241611 56242226 + 0 NA Intergenic Intergenic 10526 ENSMUSG00000077455.1 ENSMUSG00000077455 ENSMUST00000104267 Gm25917 snoRNA Interval_20184 chr10 115491909 115493661 + 0 NA intron (ENSMUSG00000020140.15, intron 4 of 16) protein_coding-intron (ENSMUSG00000020140.15, intron 4 of 17) 64278 ENSMUSG00000034163.10 ENSMUSG00000034163 ENSMUST00000141246 Zfc3h1 protein_coding Interval_41821 chr12 119907862 119908484 + 0 NA Intergenic Intergenic -2874 ENSMUSG00000113460.1 ENSMUSG00000113460 ENSMUST00000222016 Gm48686 TEC Interval_22680 chr11 12912908 12914062 + 0 NA Intergenic Intergenic 24453 ENSMUSG00000083859.1 ENSMUSG00000083859 ENSMUST00000118518 Gm12003 processed_pseudogene Interval_174118 chrX 135724558 135725327 + 0 NA intron (ENSMUSG00000060726.10, intron 1 of 4) protein_coding-intron (ENSMUSG00000060726.10, intron 1 of 4) 319 ENSMUSG00000060726.10 ENSMUSG00000060726 ENSMUST00000113154 Tmsb15a protein_coding Interval_29330 chr11 83224037 83224708 + 0 NA promoter-TSS (ENSMUSG00000083161.2) transcribed_unprocessed_pseudogene-promoter-TSS (ENSMUSG00000083161.2) -82 ENSMUSG00000083161.2 ENSMUSG00000083161 ENSMUST00000215482 Gm11427 transcribed_unprocessed_pseudogene Interval_157333 chr8 69610901 69611208 + 0 NA TTS (ENSMUSG00000060427.15) protein_coding-TTS (ENSMUSG00000060427.15) 3009 ENSMUSG00000060427.15 ENSMUSG00000060427 ENSMUST00000140522 Zfp868 protein_coding Interval_36312 chr12 41052701 41054572 + 0 NA intron (ENSMUSG00000056899.10, intron 2 of 2) protein_coding-intron (ENSMUSG00000056899.10, intron 2 of 6) -8697 ENSMUSG00000113994.1 ENSMUSG00000113994 ENSMUST00000220956 Gm47375 antisense Interval_53655 chr14 60645277 60646692 + 0 NA intron (ENSMUSG00000021990.16, intron 2 of 2) protein_coding-intron (ENSMUSG00000021990.16, intron 1 of 12) -49082 ENSMUSG00000114408.1 ENSMUSG00000114408 ENSMUST00000224210 Gm47810 processed_pseudogene Interval_132303 chr5 144046739 144046975 + 0 NA Intergenic Intergenic -20187 ENSMUSG00000029618.13 ENSMUSG00000029618 ENSMUST00000110702 Ocm protein_coding Interval_96883 chr2 129208042 129208458 + 0 NA TTS (ENSMUSG00000027397.14) protein_coding-TTS (ENSMUSG00000027397.14) -9056 ENSMUSG00000103009.1 ENSMUSG00000103009 ENSMUST00000192413 Gm4430 TEC Interval_79496 chr18 32376636 32378449 + 0 NA promoter-TSS (ENSMUSG00000097413.2) lincRNA-promoter-TSS (ENSMUSG00000097413.2) 312 ENSMUSG00000024381.16 ENSMUSG00000024381 ENSMUST00000234373 Bin1 protein_coding Interval_23719 chr11 25300773 25301592 + 0 NA promoter-TSS (ENSMUSG00000086439.1) lincRNA-promoter-TSS (ENSMUSG00000086439.1) -81 ENSMUSG00000086439.1 ENSMUSG00000086439 ENSMUST00000145127 Gm12069 lincRNA Interval_164757 chr9 41207195 41208068 + 0 NA intron (ENSMUSG00000100837.7, intron 1 of 4) lincRNA-intron (ENSMUSG00000100837.7, intron 1 of 4) 11535 ENSMUSG00000100837.7 ENSMUSG00000100837 ENSMUST00000188499 1700063D05Rik lincRNA Interval_8254 chr1 136750591 136750833 + 0 NA Intergenic Intergenic 6897 ENSMUSG00000096432.1 ENSMUSG00000096432 ENSMUST00000175316 Gm22132 miRNA Interval_92460 chr2 59843053 59843814 + 0 NA exon (ENSMUSG00000035168.16, exon 27 of 27) protein_coding-exon (ENSMUSG00000035168.16, exon 27 of 27) 19293 ENSMUSG00000026988.15 ENSMUSG00000026988 ENSMUST00000131285 Wdsub1 protein_coding Interval_141385 chr6 127877723 127878025 + 0 NA promoter-TSS (ENSMUSG00000107060.1) lincRNA-promoter-TSS (ENSMUSG00000107060.1) -628 ENSMUSG00000107060.1 ENSMUSG00000107060 ENSMUST00000202448 Gm38901 lincRNA Interval_97075 chr2 131043022 131043317 + 0 NA promoter-TSS (ENSMUSG00000027316.15) protein_coding-promoter-TSS (ENSMUSG00000027316.15) -1712 ENSMUSG00000027316.15 ENSMUSG00000027316 ENSMUST00000110235 Gfra4 protein_coding Interval_69629 chr16 94722852 94723105 + 0 NA intron (ENSMUSG00000116641.1, intron 1 of 4) antisense-intron (ENSMUSG00000116641.1, intron 1 of 4) 1084 ENSMUSG00000116641.1 ENSMUSG00000116641 ENSMUST00000232585 Gm41505 antisense Interval_115917 chr4 106261006 106261620 + 0 NA intron (ENSMUSG00000086249.1, intron 2 of 4) processed_transcript-intron (ENSMUSG00000086249.1, intron 2 of 4) 4282 ENSMUSG00000082958.1 ENSMUSG00000082958 ENSMUST00000120932 Gm12731 processed_pseudogene Interval_106888 chr3 101590390 101590679 + 0 NA exon (ENSMUSG00000033161.10, exon 8 of 23) protein_coding-exon (ENSMUSG00000033161.10, exon 8 of 23) -1495 ENSMUSG00000033161.10 ENSMUSG00000033161 ENSMUST00000136340 Atp1a1 protein_coding Interval_102922 chr3 32822509 32823314 + 0 NA intron (ENSMUSG00000056900.13, intron 1 of 14) protein_coding-intron (ENSMUSG00000056900.13, intron 1 of 20) 5200 ENSMUSG00000056900.13 ENSMUSG00000056900 ENSMUST00000156769 Usp13 protein_coding Interval_144556 chr7 25864777 25865963 + 0 NA intron (ENSMUSG00000108415.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000108415.1, intron 1 of 2) -3575 ENSMUSG00000092999.1 ENSMUSG00000092999 ENSMUST00000175258 Gm23921 misc_RNA Interval_121434 chr4 155769641 155770823 + 0 NA TTS (ENSMUSG00000054514.3) antisense-TTS (ENSMUSG00000054514.3) 4466 ENSMUSG00000042116.3 ENSMUSG00000042116 ENSMUST00000042196 Vwa1 protein_coding Interval_148599 chr7 83010185 83010554 + 0 NA Intergenic Intergenic 15534 ENSMUSG00000077149.1 ENSMUSG00000077149 ENSMUST00000103961 Gm22934 snoRNA Interval_173038 chrX 67013842 67014258 + 0 NA Intergenic Intergenic 41396 ENSMUSG00000081442.1 ENSMUSG00000081442 ENSMUST00000117977 Gm14682 processed_pseudogene Interval_62079 chr15 86250142 86250717 + 0 NA intron (ENSMUSG00000051864.10, intron 4 of 12) protein_coding-intron (ENSMUSG00000051864.10, intron 4 of 12) 14924 ENSMUSG00000051864.10 ENSMUSG00000051864 ENSMUST00000229242 Tbc1d22a protein_coding Interval_13189 chr10 12915561 12916149 + 0 NA TTS (ENSMUSG00000097378.8) lincRNA-TTS (ENSMUSG00000097378.8) 7235 ENSMUSG00000097378.8 ENSMUSG00000097378 ENSMUST00000180529 B230208H11Rik lincRNA Interval_24272 chr11 31986808 31987309 + 0 NA Intergenic Intergenic -13405 ENSMUSG00000020297.10 ENSMUSG00000020297 ENSMUST00000093219 Nsg2 protein_coding Interval_123467 chr5 32725629 32725893 + 0 NA intron (ENSMUSG00000082305.4, intron 7 of 18) transcribed_unprocessed_pseudogene-intron (ENSMUSG00000082305.4, intron 6 of 17) 5431 ENSMUSG00000082305.4 ENSMUSG00000082305 ENSMUST00000202224 Gm2420 transcribed_unprocessed_pseudogene Interval_48879 chr13 104252786 104253345 + 0 NA TTS (ENSMUSG00000021714.15) protein_coding-TTS (ENSMUSG00000021714.15) 17190 ENSMUSG00000021714.15 ENSMUSG00000021714 ENSMUST00000224098 Cenpk protein_coding Interval_107006 chr3 102806882 102807564 + 0 NA Intergenic Intergenic -22434 ENSMUSG00000105855.1 ENSMUSG00000105855 ENSMUST00000197999 Gm42681 antisense Interval_14788 chr10 39898364 39899725 + 0 NA promoter-TSS (ENSMUSG00000097890.2) bidirectional_promoter_lncRNA-promoter-TSS (ENSMUSG00000097890.2) 125 ENSMUSG00000096687.8 ENSMUSG00000096687 ENSMUST00000239084 Mfsd4b4 protein_coding Interval_74379 chr17 49759274 49759550 + 0 NA TTS (ENSMUSG00000023999.14) protein_coding-TTS (ENSMUSG00000023999.14) 62413 ENSMUSG00000090012.1 ENSMUSG00000090012 ENSMUST00000159971 Gm16555 antisense Interval_130736 chr5 130037803 130038613 + 0 NA intron (ENSMUSG00000025532.13, intron 3 of 3) protein_coding-intron (ENSMUSG00000025532.13, intron 3 of 5) 8897 ENSMUSG00000025532.13 ENSMUSG00000025532 ENSMUST00000202691 Crcp protein_coding Interval_53665 chr14 60732838 60733226 + 0 NA exon (ENSMUSG00000021990.16, exon 1 of 10) protein_coding-exon (ENSMUSG00000021990.16, exon 1 of 10) 126 ENSMUSG00000021990.16 ENSMUSG00000021990 ENSMUST00000162939 Spata13 protein_coding Interval_104295 chr3 62968088 62969080 + 0 NA Intergenic Intergenic -44351 ENSMUSG00000063001.10 ENSMUSG00000063001 ENSMUST00000077976 Gm9701 processed_pseudogene Interval_126155 chr5 79960678 79961039 + 0 NA Intergenic Intergenic -138050 ENSMUSG00000095594.1 ENSMUSG00000095594 ENSMUST00000177635 Gm24304 snRNA Interval_165912 chr9 54593288 54594273 + 0 NA intron (ENSMUSG00000032279.11, intron 3 of 10) protein_coding-intron (ENSMUSG00000032279.11, intron 3 of 10) 7446 ENSMUSG00000032279.11 ENSMUSG00000032279 ENSMUST00000214136 Idh3a protein_coding Interval_163438 chr9 21436065 21436524 + 0 NA intron (ENSMUSG00000033335.17, intron 1 of 2) protein_coding-intron (ENSMUSG00000033335.17, intron 1 of 20) 11326 ENSMUSG00000033335.17 ENSMUSG00000033335 ENSMUST00000174243 Dnm2 protein_coding Interval_164559 chr9 38643448 38644237 + 0 NA Intergenic Intergenic 3680 ENSMUSG00000057444.3 ENSMUSG00000057444 ENSMUST00000215191 Olfr915 polymorphic_pseudogene Interval_85635 chr19 29229850 29230381 + 0 NA Intergenic Intergenic -22326 ENSMUSG00000024789.13 ENSMUSG00000024789 ENSMUST00000238009 Jak2 protein_coding Interval_33458 chr11 116653633 116654610 + 0 NA exon (ENSMUSG00000020810.5, exon 1 of 4) protein_coding-exon (ENSMUSG00000020810.5, exon 1 of 4) 192 ENSMUSG00000020810.5 ENSMUSG00000020810 ENSMUST00000021166 Cygb protein_coding Interval_94008 chr2 80660327 80660714 + 0 NA Intergenic Intergenic 21256 ENSMUSG00000026999.14 ENSMUSG00000026999 ENSMUST00000127926 Nup35 protein_coding Interval_64857 chr16 16593844 16594583 + 0 NA intron (ENSMUSG00000022788.16, intron 1 of 8) protein_coding-intron (ENSMUSG00000022788.16, intron 1 of 8) -34167 ENSMUSG00000022788.16 ENSMUSG00000022788 ENSMUST00000161624 Fgd4 protein_coding Interval_4449 chr1 74268480 74268808 + 0 NA TTS (ENSMUSG00000006304.14) protein_coding-TTS (ENSMUSG00000006304.14) -9906 ENSMUSG00000064272.3 ENSMUSG00000064272 ENSMUST00000077985 Gpbar1 protein_coding Interval_6664 chr1 118620235 118621106 + 0 NA Intergenic Intergenic -7275 ENSMUSG00000026380.10 ENSMUSG00000026380 ENSMUST00000027629 Tfcp2l1 protein_coding Interval_127667 chr5 106451737 106452154 + 0 NA TTS (ENSMUSG00000034384.11) protein_coding-TTS (ENSMUSG00000034384.11) 6221 ENSMUSG00000034384.11 ENSMUSG00000034384 ENSMUST00000086795 Barhl2 protein_coding Interval_65480 chr16 22622281 22623586 + 0 NA intron (ENSMUSG00000022861.17, intron 1 of 5) protein_coding-intron (ENSMUSG00000022861.17, intron 1 of 23) 17607 ENSMUSG00000098448.1 ENSMUSG00000098448 ENSMUST00000184329 Mir6362 miRNA Interval_92533 chr2 60390044 60390516 + 0 NA Intergenic Intergenic -6977 ENSMUSG00000026980.15 ENSMUSG00000026980 ENSMUST00000028362 Ly75 protein_coding Interval_14380 chr10 31917556 31918122 + 0 NA intron (ENSMUSG00000069670.8, intron 4 of 6) protein_coding-intron (ENSMUSG00000069670.8, intron 4 of 6) 49927 ENSMUSG00000112866.1 ENSMUSG00000112866 ENSMUST00000219333 Gm47704 TEC Interval_71442 chr17 23771052 23772077 + 0 NA promoter-TSS (ENSMUSG00000040097.16) protein_coding-promoter-TSS (ENSMUSG00000040097.16) -277 ENSMUSG00000086719.1 ENSMUSG00000086719 ENSMUST00000147774 Gm16275 antisense Interval_74864 chr17 56952913 56954015 + 0 NA TTS (ENSMUSG00000045019.4) protein_coding-TTS (ENSMUSG00000045019.4) -4856 ENSMUSG00000117245.1 ENSMUSG00000117245 ENSMUST00000232883 Gm49887 lincRNA Interval_160162 chr8 106838917 106840165 + 0 NA intron (ENSMUSG00000041949.6, intron 17 of 17) protein_coding-intron (ENSMUSG00000041949.6, intron 17 of 17) -31295 ENSMUSG00000031910.14 ENSMUSG00000031910 ENSMUST00000175987 Has3 protein_coding Interval_54930 chr14 76311712 76312493 + 0 NA Intergenic Intergenic 60645 ENSMUSG00000115625.1 ENSMUSG00000115625 ENSMUST00000227933 2900040C04Rik lincRNA Interval_148112 chr7 79298351 79299788 + 0 NA promoter-TSS (ENSMUSG00000108460.1) TEC-promoter-TSS (ENSMUSG00000108460.1) 44 ENSMUSG00000108460.1 ENSMUSG00000108460 ENSMUST00000205557 Gm39041 TEC Interval_13423 chr10 18100536 18100797 + 0 NA intron (ENSMUSG00000019854.17, intron 8 of 18) protein_coding-intron (ENSMUSG00000019854.17, intron 8 of 19) -3546 ENSMUSG00000019854.17 ENSMUSG00000019854 ENSMUST00000150533 Reps1 protein_coding Interval_164289 chr9 35034831 35035750 + 0 NA TTS (ENSMUSG00000032036.15) protein_coding-TTS (ENSMUSG00000032036.15) 37341 ENSMUSG00000032038.7 ENSMUSG00000032038 ENSMUST00000215463 St3gal4 protein_coding Interval_170651 chr9 109901967 109902971 + 0 NA Intergenic Intergenic 12826 ENSMUSG00000098490.1 ENSMUSG00000098490 ENSMUST00000184522 Mir7089 miRNA Interval_164677 chr9 40499605 40499941 + 0 NA intron (ENSMUSG00000040111.17, intron 1 of 20) protein_coding-intron (ENSMUSG00000040111.17, intron 1 of 20) 12053 ENSMUSG00000111515.1 ENSMUSG00000111515 ENSMUST00000215697 Gm5055 processed_pseudogene Interval_105606 chr3 88070806 88071258 + 0 NA exon (ENSMUSG00000051036.13, exon 8 of 10) protein_coding-exon (ENSMUSG00000051036.13, exon 8 of 10) 4485 ENSMUSG00000051036.13 ENSMUSG00000051036 ENSMUST00000238508 Ttc24 protein_coding Interval_100727 chr2 172105037 172105232 + 0 NA Intergenic Intergenic 4513 ENSMUSG00000083793.1 ENSMUSG00000083793 ENSMUST00000117182 Gm14274 processed_pseudogene Interval_129497 chr5 120576675 120577074 + 0 NA intron (ENSMUSG00000032741.9, intron 2 of 14) protein_coding-intron (ENSMUSG00000032741.9, intron 2 of 27) 11720 ENSMUSG00000032741.9 ENSMUSG00000032741 ENSMUST00000201601 Tpcn1 protein_coding Interval_72003 chr17 27527536 27528724 + 0 NA Intergenic Intergenic -1937 ENSMUSG00000082741.2 ENSMUSG00000082741 ENSMUST00000119573 Gm9703 processed_pseudogene Interval_121945 chr5 11609857 11610394 + 0 NA Intergenic Intergenic 5454 ENSMUSG00000104774.1 ENSMUSG00000104774 ENSMUST00000196153 Gm8920 processed_pseudogene Interval_121265 chr4 154517613 154518594 + 0 NA intron (ENSMUSG00000039410.16, intron 2 of 2) protein_coding-intron (ENSMUSG00000039410.16, intron 2 of 16) -32179 ENSMUSG00000086565.1 ENSMUSG00000086565 ENSMUST00000143888 Gm13133 antisense Interval_101421 chr2 181243726 181245093 + 0 NA Intergenic Intergenic -2384 ENSMUSG00000027580.17 ENSMUSG00000027580 ENSMUST00000155049 Helz2 protein_coding Interval_72056 chr17 27761430 27762215 + 0 NA intron (ENSMUSG00000056692.13, intron 4 of 4) protein_coding-intron (ENSMUSG00000056692.13, intron 4 of 4) -22557 ENSMUSG00000080731.2 ENSMUSG00000080731 ENSMUST00000121414 Rps2-ps9 transcribed_processed_pseudogene Interval_28422 chr11 75767946 75769855 + 0 NA TTS (ENSMUSG00000020848.7) protein_coding-TTS (ENSMUSG00000020848.7) 17296 ENSMUSG00000020849.13 ENSMUSG00000020849 ENSMUST00000155057 Ywhae protein_coding Interval_78914 chr18 21557978 21558258 + 0 NA exon (ENSMUSG00000042514.11, exon 5 of 8) protein_coding-exon (ENSMUSG00000042514.11, exon 5 of 8) -64019 ENSMUSG00000117386.1 ENSMUSG00000117386 ENSMUST00000234227 Gm4837 processed_pseudogene Interval_174647 chrX 162009502 162010502 + 0 NA intron (ENSMUSG00000059493.13, intron 1 of 8) protein_coding-intron (ENSMUSG00000059493.13, intron 1 of 7) -59455 ENSMUSG00000065828.1 ENSMUSG00000065828 ENSMUST00000083894 Gm26317 snRNA Interval_9649 chr1 160729468 160729851 + 0 NA intron (ENSMUSG00000026721.16, intron 6 of 12) protein_coding-intron (ENSMUSG00000026721.16, intron 5 of 20) -1499 ENSMUSG00000103632.1 ENSMUSG00000103632 ENSMUST00000193473 Gm38329 TEC Interval_15533 chr10 50865087 50865273 + 0 NA TTS (ENSMUSG00000084635.1) misc_RNA-TTS (ENSMUSG00000084635.1) 1184 ENSMUSG00000084635.1 ENSMUSG00000084635 ENSMUST00000122686 Gm23883 misc_RNA Interval_130886 chr5 133496363 133496901 + 0 NA Intergenic Intergenic 21509 ENSMUSG00000058905.5 ENSMUSG00000058905 ENSMUST00000145209 Gm10051 processed_pseudogene Interval_21786 chr11 4337269 4337514 + 0 NA Intergenic Intergenic -13136 ENSMUSG00000065627.1 ENSMUSG00000065627 ENSMUST00000083693 Gm24803 snRNA Interval_99795 chr2 164953333 164953596 + 0 NA promoter-TSS (ENSMUSG00000017737.2) protein_coding-promoter-TSS (ENSMUSG00000017737.2) -922 ENSMUSG00000017737.2 ENSMUSG00000017737 ENSMUST00000144917 Mmp9 protein_coding Interval_55898 chr14 101881508 101881764 + 0 NA TTS (ENSMUSG00000033060.16) protein_coding-TTS (ENSMUSG00000033060.16) 41129 ENSMUSG00000033060.16 ENSMUSG00000033060 ENSMUST00000160038 Lmo7 protein_coding Interval_102478 chr3 27106898 27107633 + 0 NA intron (ENSMUSG00000027699.19, intron 21 of 23) protein_coding-intron (ENSMUSG00000027699.19, intron 21 of 23) -1717 ENSMUSG00000087742.1 ENSMUSG00000087742 ENSMUST00000157117 Gm25152 snoRNA Interval_1515 chr1 24586080 24587690 + 0 NA intron (ENSMUSG00000026141.13, intron 1 of 50) protein_coding-intron (ENSMUSG00000026141.13, intron 1 of 47) 8538 ENSMUSG00000099997.1 ENSMUSG00000099997 ENSMUST00000187481 Tubb4b-ps2 processed_pseudogene Interval_65609 chr16 24035790 24036626 + 0 NA Intergenic Intergenic -3698 ENSMUSG00000116290.1 ENSMUSG00000116290 ENSMUST00000230357 Gm49518 lincRNA Interval_32482 chr11 107808536 107808949 + 0 NA Intergenic Intergenic 14876 ENSMUSG00000087184.1 ENSMUSG00000087184 ENSMUST00000141271 Gm11650 processed_transcript Interval_100670 chr2 171095698 171096147 + 0 NA Intergenic Intergenic -119577 ENSMUSG00000084818.1 ENSMUSG00000084818 ENSMUST00000145800 Gm14640 lincRNA Interval_132247 chr5 143589033 143589503 + 0 NA Intergenic Intergenic -33233 ENSMUSG00000018001.18 ENSMUSG00000018001 ENSMUST00000110727 Cyth3 protein_coding Interval_122658 chr5 24510576 24510887 + 0 NA intron (ENSMUSG00000067724.5, intron 1 of 1) protein_coding-intron (ENSMUSG00000067724.5, intron 1 of 1) 16471 ENSMUSG00000067724.5 ENSMUSG00000067724 ENSMUST00000088311 Gbx1 protein_coding Interval_112053 chr4 33585935 33588272 + 0 NA Intergenic Intergenic 41858 ENSMUSG00000096184.1 ENSMUSG00000096184 ENSMUST00000180209 Gm23304 miRNA Interval_38888 chr12 83623783 83625067 + 0 NA Intergenic Intergenic -3356 ENSMUSG00000113431.1 ENSMUSG00000113431 ENSMUST00000221586 Gm6722 processed_pseudogene Interval_94934 chr2 101986306 101986827 + 0 NA intron (ENSMUSG00000048058.17, intron 4 of 5) protein_coding-intron (ENSMUSG00000048058.17, intron 4 of 5) -53063 ENSMUSG00000085417.1 ENSMUSG00000085417 ENSMUST00000123891 Gm13919 antisense Interval_111830 chr4 31640391 31640661 + 0 NA Intergenic Intergenic 260054 ENSMUSG00000082254.1 ENSMUSG00000082254 ENSMUST00000118967 Gm11922 processed_pseudogene Interval_137661 chr6 78154841 78155627 + 0 NA Intergenic Intergenic -60644 ENSMUSG00000108045.1 ENSMUSG00000108045 ENSMUST00000075809 Gm5576 processed_pseudogene Interval_28595 chr11 77041053 77041291 + 0 NA Intergenic Intergenic -11775 ENSMUSG00000077639.1 ENSMUSG00000077639 ENSMUST00000104451 Gm22772 snoRNA Interval_34991 chr12 16504062 16504744 + 0 NA Intergenic Intergenic 106563 ENSMUSG00000020593.16 ENSMUSG00000020593 ENSMUST00000221146 Lpin1 protein_coding Interval_143609 chr7 13123542 13125107 + 0 NA Intergenic Intergenic -4408 ENSMUSG00000070816.3 ENSMUSG00000070816 ENSMUST00000094828 Vmn1r86 protein_coding Interval_54881 chr14 75963462 75964220 + 0 NA exon (ENSMUSG00000046523.5, exon 2 of 2) protein_coding-exon (ENSMUSG00000046523.5, exon 2 of 2) 8778 ENSMUSG00000065799.1 ENSMUSG00000065799 ENSMUST00000083865 Gm25517 snoRNA Interval_95053 chr2 103537699 103537965 + 0 NA Intergenic Intergenic -9427 ENSMUSG00000081687.1 ENSMUSG00000081687 ENSMUST00000118456 Gm13996 processed_pseudogene Interval_30813 chr11 96643855 96644354 + 0 NA intron (ENSMUSG00000057058.16, intron 4 of 7) protein_coding-intron (ENSMUSG00000057058.16, intron 4 of 11) -122698 ENSMUSG00000085242.1 ENSMUSG00000085242 ENSMUST00000124865 Gm11537 antisense Interval_113868 chr4 59452451 59452763 + 0 NA Intergenic Intergenic -80140 ENSMUSG00000080831.1 ENSMUSG00000080831 ENSMUST00000119529 Gm12529 processed_pseudogene Interval_107802 chr3 115553663 115554486 + 0 NA Intergenic Intergenic 35498 ENSMUSG00000105829.1 ENSMUSG00000105829 ENSMUST00000198229 Gm43669 processed_pseudogene Interval_42579 chr13 15762587 15763239 + 0 NA Intergenic Intergenic 7207 ENSMUSG00000113309.1 ENSMUSG00000113309 ENSMUST00000222341 Gm48408 TEC Interval_60840 chr15 77078463 77081359 + 0 NA TTS (ENSMUSG00000033565.18) protein_coding-TTS (ENSMUSG00000033565.18) -4487 ENSMUSG00000097267.2 ENSMUSG00000097267 ENSMUST00000181870 1700109K24Rik antisense Interval_140675 chr6 120473701 120474240 + 0 NA intron (ENSMUSG00000002897.5, intron 4 of 10) protein_coding-intron (ENSMUSG00000002897.5, intron 4 of 12) 10723 ENSMUSG00000002897.5 ENSMUSG00000002897 ENSMUST00000204078 Il17ra protein_coding Interval_31755 chr11 102652934 102653379 + 0 NA Intergenic Intergenic 6524 ENSMUSG00000076129.1 ENSMUSG00000076129 ENSMUST00000102175 Gm22920 miRNA Interval_132537 chr5 146024577 146024919 + 0 NA Intergenic Intergenic 3142 ENSMUSG00000104636.1 ENSMUSG00000104636 ENSMUST00000200131 Gm43239 processed_pseudogene Interval_130165 chr5 124637200 124638030 + 0 NA TTS (ENSMUSG00000038023.12) protein_coding-TTS (ENSMUSG00000038023.12) 9039 ENSMUSG00000038023.12 ENSMUSG00000038023 ENSMUST00000197161 Atp6v0a2 protein_coding Interval_169590 chr9 99324414 99325329 + 0 NA intron (ENSMUSG00000037681.13, intron 1 of 7) protein_coding-intron (ENSMUSG00000037681.13, intron 9 of 22) 2045 ENSMUSG00000103452.1 ENSMUSG00000103452 ENSMUST00000191694 1700008A23Rik TEC Interval_96434 chr2 122558258 122559277 + 0 NA Intergenic Intergenic 39767 ENSMUSG00000027199.14 ENSMUSG00000027199 ENSMUST00000140808 Gatm protein_coding Interval_10955 chr1 177548552 177548816 + 0 NA Intergenic Intergenic 45838 ENSMUSG00000102885.1 ENSMUSG00000102885 ENSMUST00000194583 Gm37280 lincRNA Interval_149963 chr7 103821822 103822062 + 0 NA Intergenic Intergenic 6154 ENSMUSG00000052305.6 ENSMUSG00000052305 ENSMUST00000153218 Hbb-bs protein_coding Interval_56906 chr14 123081294 123081547 + 0 NA intron (ENSMUSG00000115016.1, intron 1 of 3) processed_transcript-intron (ENSMUSG00000115016.1, intron 1 of 3) 38138 ENSMUSG00000115016.1 ENSMUSG00000115016 ENSMUST00000226524 AA536875 processed_transcript Interval_146141 chr7 44310503 44311965 + 0 NA intron (ENSMUSG00000038738.15, intron 1 of 24) protein_coding-intron (ENSMUSG00000038738.15, intron 1 of 24) -3517 ENSMUSG00000108719.1 ENSMUSG00000108719 ENSMUST00000206373 Gm44757 TEC Interval_27151 chr11 63402574 63402924 + 0 NA Intergenic Intergenic -10420 ENSMUSG00000085113.1 ENSMUSG00000085113 ENSMUST00000151765 B130011K05Rik lincRNA Interval_94687 chr2 93361418 93362133 + 0 NA Intergenic Intergenic 25054 ENSMUSG00000089073.1 ENSMUSG00000089073 ENSMUST00000158448 Gm23380 rRNA Interval_25917 chr11 52539607 52540341 + 0 NA Intergenic Intergenic -52664 ENSMUSG00000083129.1 ENSMUSG00000083129 ENSMUST00000118245 Gm12210 processed_pseudogene Interval_101337 chr2 180547131 180548362 + 0 NA Intergenic Intergenic -33558 ENSMUSG00000027569.15 ENSMUSG00000027569 ENSMUST00000149969 Mrgbp protein_coding Interval_31681 chr11 102223298 102226105 + 0 NA intron (ENSMUSG00000008855.17, intron 2 of 28) protein_coding-intron (ENSMUSG00000008855.17, intron 2 of 28) 5441 ENSMUSG00000008855.17 ENSMUSG00000008855 ENSMUST00000125072 Hdac5 protein_coding Interval_120490 chr4 148925779 148926786 + 0 NA intron (ENSMUSG00000028977.17, intron 2 of 3) protein_coding-intron (ENSMUSG00000028977.17, intron 4 of 15) -11958 ENSMUSG00000086766.1 ENSMUSG00000086766 ENSMUST00000151967 Gm15969 antisense Interval_171739 chr9 120628103 120629869 + 0 NA Intergenic Intergenic -14238 ENSMUSG00000110760.1 ENSMUSG00000110760 ENSMUST00000216606 Gm39456 lincRNA Interval_14125 chr10 27885812 27886032 + 0 NA Intergenic Intergenic 15831 ENSMUSG00000112620.1 ENSMUSG00000112620 ENSMUST00000218873 Gm18972 processed_pseudogene Interval_50340 chr14 11928080 11928814 + 0 NA intron (ENSMUSG00000021745.14, intron 2 of 3) protein_coding-intron (ENSMUSG00000021745.14, intron 2 of 29) 23768 ENSMUSG00000114267.1 ENSMUSG00000114267 ENSMUST00000225771 Gm48600 TEC Interval_82726 chr18 76218197 76218927 + 0 NA Intergenic Intergenic 5621 ENSMUSG00000118294.1 ENSMUSG00000118294 ENSMUST00000237277 Gm9028 processed_pseudogene Interval_31280 chr11 99310379 99311214 + 0 NA Intergenic Intergenic -4656 ENSMUSG00000083666.1 ENSMUSG00000083666 ENSMUST00000121842 Gm12358 processed_pseudogene Interval_164099 chr9 31470914 31471535 + 0 NA intron (ENSMUSG00000111655.1, intron 1 of 1) bidirectional_promoter_lncRNA-intron (ENSMUSG00000111655.1, intron 1 of 1) -7023 ENSMUSG00000041737.8 ENSMUSG00000041737 ENSMUST00000216875 Tmem45b protein_coding Interval_122268 chr5 20822172 20822755 + 0 NA intron (ENSMUSG00000039987.15, intron 2 of 5) protein_coding-intron (ENSMUSG00000039987.15, intron 2 of 17) 16373 ENSMUSG00000082716.1 ENSMUSG00000082716 ENSMUST00000118086 Rpl31-ps5 processed_pseudogene Interval_62224 chr15 88936793 88937017 + 0 NA intron (ENSMUSG00000022388.14, intron 2 of 11) protein_coding-intron (ENSMUSG00000022388.14, intron 2 of 11) 17154 ENSMUSG00000022388.14 ENSMUSG00000022388 ENSMUST00000137740 Ttll8 protein_coding Interval_104043 chr3 57642826 57644160 + 0 NA TTS (ENSMUSG00000036513.15) protein_coding-TTS (ENSMUSG00000036513.15) -2656 ENSMUSG00000104965.1 ENSMUSG00000104965 ENSMUST00000198535 Gm43437 TEC Interval_159579 chr8 95596537 95597326 + 0 NA intron (ENSMUSG00000110447.1, intron 1 of 3) lincRNA-intron (ENSMUSG00000110447.1, intron 1 of 4) -4588 ENSMUSG00000110447.1 ENSMUSG00000110447 ENSMUST00000213069 Gm31518 lincRNA Interval_151596 chr7 124703696 124704802 + 0 NA intron (ENSMUSG00000086254.1, intron 1 of 3) lincRNA-intron (ENSMUSG00000086254.1, intron 1 of 3) 4686 ENSMUSG00000086254.1 ENSMUSG00000086254 ENSMUST00000130240 3100003L05Rik lincRNA Interval_59188 chr15 47201858 47202134 + 0 NA Intergenic Intergenic -219919 ENSMUSG00000115534.1 ENSMUSG00000115534 ENSMUST00000227510 Gm7508 processed_pseudogene Interval_110270 chr3 155188615 155188977 + 0 NA intron (ENSMUSG00000028182.14, intron 7 of 7) protein_coding-intron (ENSMUSG00000028182.14, intron 7 of 7) 87927 ENSMUSG00000103511.1 ENSMUSG00000103511 ENSMUST00000193089 Gm5285 processed_pseudogene Interval_137120 chr6 67633393 67633821 + 0 NA exon (ENSMUSG00000106248.1, exon 1 of 1) processed_pseudogene-exon (ENSMUSG00000106248.1, exon 1 of 1) 536 ENSMUSG00000106248.1 ENSMUSG00000106248 ENSMUST00000200197 Gm9728 processed_pseudogene Interval_5987 chr1 93734960 93735205 + 0 NA intron (ENSMUSG00000101952.1, intron 1 of 2) protein_coding-intron (ENSMUSG00000026279.14, intron 2 of 5) 3978 ENSMUSG00000101952.1 ENSMUSG00000101952 ENSMUST00000188846 Gm10550 antisense Interval_54948 chr14 76437396 76438319 + 0 NA promoter-TSS (ENSMUSG00000022010.19) protein_coding-promoter-TSS (ENSMUSG00000022010.19) 19029 ENSMUSG00000022010.19 ENSMUSG00000022010 ENSMUST00000133224 Tsc22d1 protein_coding Interval_52590 chr14 47748207 47749920 + 0 NA Intergenic Intergenic 8430 ENSMUSG00000115719.1 ENSMUSG00000115719 ENSMUST00000226197 4930538L07Rik lincRNA Interval_95216 chr2 104851676 104852043 + 0 NA Intergenic Intergenic -2366 ENSMUSG00000027171.10 ENSMUSG00000027171 ENSMUST00000126824 Prrg4 protein_coding Interval_43862 chr13 37680897 37681629 + 0 NA Intergenic Intergenic 5162 ENSMUSG00000114546.1 ENSMUSG00000114546 ENSMUST00000224246 Gm49350 lincRNA Interval_141791 chr6 134536850 134537026 + 0 NA intron (ENSMUSG00000030201.15, intron 1 of 3) protein_coding-intron (ENSMUSG00000030201.15, intron 2 of 22) -69177 ENSMUSG00000030201.15 ENSMUSG00000030201 ENSMUST00000203235 Lrp6 protein_coding Interval_29911 chr11 87701985 87702338 + 0 NA promoter-TSS (ENSMUSG00000085972.1) sense_intronic-promoter-TSS (ENSMUSG00000085972.1) 38 ENSMUSG00000085972.1 ENSMUSG00000085972 ENSMUST00000142895 1110028F11Rik sense_intronic Interval_1018 chr1 14112997 14114216 + 0 NA promoter-TSS (ENSMUSG00000104209.1) TEC-promoter-TSS (ENSMUSG00000104209.1) -787 ENSMUSG00000104209.1 ENSMUSG00000104209 ENSMUST00000193148 Gm37400 TEC Interval_34688 chr12 8694016 8694526 + 0 NA intron (ENSMUSG00000020594.14, intron 2 of 4) protein_coding-intron (ENSMUSG00000020594.14, intron 1 of 19) 20137 ENSMUSG00000020594.14 ENSMUSG00000020594 ENSMUST00000171608 Pum2 protein_coding Interval_141231 chr6 126002592 126003594 + 0 NA intron (ENSMUSG00000038115.16, intron 21 of 25) protein_coding-intron (ENSMUSG00000038115.16, intron 12 of 16) 118678 ENSMUSG00000088959.1 ENSMUSG00000088959 ENSMUST00000158334 Gm24947 snRNA Interval_174402 chrX 151313658 151313986 + 0 NA exon (ENSMUSG00000084771.8, exon 3 of 3) antisense-exon (ENSMUSG00000084771.8, exon 3 of 3) -2416 ENSMUSG00000084771.8 ENSMUSG00000084771 ENSMUST00000175825 A230072E10Rik antisense Interval_79687 chr18 34538366 34538640 + 0 NA Intergenic Intergenic -3810 ENSMUSG00000012282.2 ENSMUSG00000012282 ENSMUST00000012426 Wnt8a protein_coding Interval_113389 chr4 54126897 54128343 + 0 NA Intergenic Intergenic 36058 ENSMUSG00000086987.1 ENSMUSG00000086987 ENSMUST00000156311 Gm12484 lincRNA Interval_60090 chr15 65258544 65259687 + 0 NA Intergenic Intergenic -58553 ENSMUSG00000115066.1 ENSMUSG00000115066 ENSMUST00000227626 Gm49242 processed_pseudogene Interval_140274 chr6 115985194 115985406 + 0 NA intron (ENSMUSG00000030123.15, intron 1 of 35) protein_coding-intron (ENSMUSG00000030123.15, intron 1 of 35) -28462 ENSMUSG00000030123.15 ENSMUSG00000030123 ENSMUST00000131590 Plxnd1 protein_coding Interval_155378 chr8 32998303 32998542 + 0 NA intron (ENSMUSG00000110214.1, intron 3 of 3) lincRNA-intron (ENSMUSG00000110214.1, intron 3 of 3) -55940 ENSMUSG00000079070.10 ENSMUSG00000079070 ENSMUST00000180220 Gm3985 lincRNA Interval_46060 chr13 60672687 60672894 + 0 NA intron (ENSMUSG00000021559.14, intron 2 of 26) protein_coding-intron (ENSMUSG00000021559.14, intron 2 of 26) 31000 ENSMUSG00000114277.1 ENSMUSG00000114277 ENSMUST00000225897 Gm48583 processed_pseudogene Interval_146846 chr7 53148015 53148609 + 0 NA Intergenic Intergenic 221242 ENSMUSG00000070203.1 ENSMUSG00000070203 ENSMUST00000093693 Gm22444 snRNA Interval_44297 chr13 43452679 43454437 + 0 NA intron (ENSMUSG00000038546.9, intron 2 of 13) protein_coding-intron (ENSMUSG00000038546.9, intron 2 of 13) 25349 ENSMUSG00000038546.9 ENSMUSG00000038546 ENSMUST00000222023 Ranbp9 protein_coding Interval_165650 chr9 50683718 50683906 + 0 NA intron (ENSMUSG00000032064.17, intron 7 of 13) protein_coding-intron (ENSMUSG00000032064.17, intron 13 of 19) 13959 ENSMUSG00000032064.17 ENSMUSG00000032064 ENSMUST00000118707 Dixdc1 protein_coding Interval_153355 chr7 143875518 143875742 + 0 NA intron (ENSMUSG00000031085.16, intron 1 of 4) protein_coding-intron (ENSMUSG00000031085.16, intron 5 of 10) 8759 ENSMUSG00000031085.16 ENSMUSG00000031085 ENSMUST00000207388 Acte1 protein_coding Interval_115879 chr4 105565115 105566065 + 0 NA Intergenic Intergenic -12750 ENSMUSG00000082061.1 ENSMUSG00000082061 ENSMUST00000121621 Gm12726 processed_pseudogene Interval_150343 chr7 109731442 109731853 + 0 NA promoter-TSS (ENSMUSG00000035951.2) protein_coding-promoter-TSS (ENSMUSG00000035951.2) 79 ENSMUSG00000035951.2 ENSMUSG00000035951 ENSMUST00000035372 Ascl3 protein_coding Interval_139135 chr6 95728782 95729103 + 0 NA Intergenic Intergenic -71474 ENSMUSG00000061838.7 ENSMUSG00000061838 ENSMUST00000203109 Suclg2 protein_coding Interval_166295 chr9 58135854 58136694 + 0 NA intron (ENSMUSG00000032327.14, intron 2 of 18) protein_coding-intron (ENSMUSG00000032327.14, intron 2 of 18) 2199 ENSMUSG00000032327.14 ENSMUSG00000032327 ENSMUST00000134450 Stra6 protein_coding Interval_32395 chr11 107334767 107334968 + 0 NA intron (ENSMUSG00000040430.18, intron 1 of 2) protein_coding-intron (ENSMUSG00000040430.18, intron 1 of 7) 2659 ENSMUSG00000040430.18 ENSMUSG00000040430 ENSMUST00000146680 Pitpnc1 protein_coding Interval_83848 chr19 5071611 5073359 + 0 NA promoter-TSS (ENSMUSG00000061451.13) protein_coding-promoter-TSS (ENSMUSG00000061451.13) 256 ENSMUSG00000117893.1 ENSMUSG00000117893 ENSMUST00000237721 Gm46658 antisense Interval_123605 chr5 33737829 33738470 + 0 NA Intergenic Intergenic 4897 ENSMUSG00000054252.18 ENSMUSG00000054252 ENSMUST00000142860 Fgfr3 protein_coding Interval_51880 chr14 33319414 33321118 + 0 NA intron (ENSMUSG00000063506.14, intron 1 of 5) protein_coding-intron (ENSMUSG00000063506.14, intron 1 of 5) 49877 ENSMUSG00000087639.1 ENSMUSG00000087639 ENSMUST00000137359 Gm15512 antisense Interval_168335 chr9 78854162 78854395 + 0 NA Intergenic Intergenic -32440 ENSMUSG00000059422.5 ENSMUSG00000059422 ENSMUST00000182917 Gm8116 processed_pseudogene Interval_145178 chr7 30477766 30478204 + 0 NA intron (ENSMUSG00000006649.17, intron 23 of 28) protein_coding-intron (ENSMUSG00000006649.17, intron 23 of 29) 120 ENSMUSG00000006649.17 ENSMUSG00000006649 ENSMUST00000131004 Nphs1 protein_coding Interval_30097 chr11 89158754 89159042 + 0 NA Intergenic Intergenic -22132 ENSMUSG00000089485.1 ENSMUSG00000089485 ENSMUST00000158860 Gm24734 misc_RNA Interval_84453 chr19 11051261 11051473 + 0 NA promoter-TSS (ENSMUSG00000075010.5) lincRNA-promoter-TSS (ENSMUSG00000075010.5) 4441 ENSMUSG00000075010.5 ENSMUSG00000075010 ENSMUST00000099676 AW112010 lincRNA Interval_145463 chr7 34943566 34944243 + 0 NA promoter-TSS (ENSMUSG00000077469.1) snoRNA-promoter-TSS (ENSMUSG00000077469.1) 81 ENSMUSG00000077469.1 ENSMUSG00000077469 ENSMUST00000104281 Gm25922 snoRNA Interval_74204 chr17 47448758 47450809 + 0 NA intron (ENSMUSG00000034382.14, intron 2 of 4) protein_coding-intron (ENSMUSG00000034382.14, intron 2 of 4) -12407 ENSMUSG00000047150.8 ENSMUSG00000047150 ENSMUST00000160678 1700001C19Rik protein_coding Interval_114464 chr4 79406348 79407183 + 0 NA Intergenic Intergenic 79057 ENSMUSG00000083496.1 ENSMUSG00000083496 ENSMUST00000121853 Gm11263 processed_pseudogene Interval_61605 chr15 82920908 82921496 + 0 NA intron (ENSMUSG00000041852.15, intron 1 of 1) protein_coding-intron (ENSMUSG00000041852.15, intron 1 of 1) -21391 ENSMUSG00000041852.15 ENSMUSG00000041852 ENSMUST00000229439 Tcf20 protein_coding Interval_110088 chr3 153194304 153194723 + 0 NA Intergenic Intergenic -11698 ENSMUSG00000105337.4 ENSMUSG00000105337 ENSMUST00000197695 1700094M23Rik lincRNA Interval_98950 chr2 156270639 156272185 + 0 NA intron (ENSMUSG00000038116.16, intron 5 of 16) protein_coding-intron (ENSMUSG00000038116.16, intron 6 of 17) 41335 ENSMUSG00000046229.10 ENSMUSG00000046229 ENSMUST00000079125 Scand1 protein_coding Interval_84577 chr19 12940678 12940888 + 0 NA Intergenic Intergenic -9475 ENSMUSG00000062892.4 ENSMUSG00000062892 ENSMUST00000082006 Olfr1450 protein_coding Interval_105766 chr3 89225200 89229027 + 0 NA promoter-TSS (ENSMUSG00000076255.2) miRNA-promoter-TSS (ENSMUSG00000076255.2) 85 ENSMUSG00000076255.2 ENSMUSG00000076255 ENSMUST00000102300 Mir92b miRNA Interval_23532 chr11 23169955 23170813 + 0 NA Intergenic Intergenic 2522 ENSMUSG00000088495.1 ENSMUSG00000088495 ENSMUST00000157870 Gm24398 snoRNA Interval_79146 chr18 24972599 24972891 + 0 NA intron (ENSMUSG00000034295.10, intron 6 of 24) protein_coding-intron (ENSMUSG00000034295.10, intron 6 of 26) 195949 ENSMUSG00000024269.11 ENSMUSG00000024269 ENSMUST00000115817 Tpgs2 protein_coding Interval_148674 chr7 84022307 84024117 + 0 NA intron (ENSMUSG00000052353.13, intron 1 of 23) protein_coding-intron (ENSMUSG00000052353.13, intron 1 of 28) 63290 ENSMUSG00000052353.13 ENSMUSG00000052353 ENSMUST00000147578 Cemip protein_coding Interval_5729 chr1 91297760 91298747 + 0 NA promoter-TSS (ENSMUSG00000026307.12) protein_coding-promoter-TSS (ENSMUSG00000026307.12) -116 ENSMUSG00000026307.12 ENSMUSG00000026307 ENSMUST00000137074 Scly protein_coding Interval_62957 chr15 98167505 98168724 + 0 NA exon (ENSMUSG00000029875.5, exon 1 of 1) protein_coding-exon (ENSMUSG00000029875.5, exon 1 of 1) 956 ENSMUSG00000029875.5 ENSMUSG00000029875 ENSMUST00000031914 Ccdc184 protein_coding Interval_28126 chr11 73018453 73019891 + 0 NA promoter-TSS (ENSMUSG00000086943.2) lincRNA-promoter-TSS (ENSMUSG00000086943.2) 164 ENSMUSG00000020785.17 ENSMUSG00000020785 ENSMUST00000145834 Camkk1 protein_coding Interval_135512 chr6 39782805 39783785 + 0 NA Intergenic Intergenic 22747 ENSMUSG00000029918.9 ENSMUSG00000029918 ENSMUST00000139992 Mrps33 protein_coding Interval_33315 chr11 115879921 115881794 + 0 NA TTS (ENSMUSG00000034427.17) protein_coding-TTS (ENSMUSG00000034427.17) 3323 ENSMUSG00000034427.17 ENSMUSG00000034427 ENSMUST00000141947 Myo15b protein_coding Interval_26286 chr11 55772393 55772561 + 0 NA intron (ENSMUSG00000086020.1, intron 1 of 4) antisense-intron (ENSMUSG00000086020.1, intron 1 of 4) 389 ENSMUSG00000086020.1 ENSMUSG00000086020 ENSMUST00000134285 Gm12239 antisense Interval_55334 chr14 83240741 83240953 + 0 NA Intergenic Intergenic -164784 ENSMUSG00000088009.1 ENSMUSG00000088009 ENSMUST00000157384 Gm24774 snoRNA Interval_104589 chr3 68572119 68572863 + 0 NA exon (ENSMUSG00000027777.15, exon 1 of 7) protein_coding-exon (ENSMUSG00000027777.15, exon 1 of 7) -24783 ENSMUSG00000084617.1 ENSMUSG00000084617 ENSMUST00000122668 Gm22073 snRNA Interval_161686 chr8 122043773 122043987 + 0 NA intron (ENSMUSG00000092329.1, intron 1 of 15) protein_coding-intron (ENSMUSG00000092329.1, intron 1 of 15) 65856 ENSMUSG00000099140.1 ENSMUSG00000099140 ENSMUST00000184699 Mir7237 miRNA Interval_173065 chrX 70252578 70253135 + 0 NA Intergenic Intergenic 108235 ENSMUSG00000035847.15 ENSMUSG00000035847 ENSMUST00000130519 Ids protein_coding Interval_59578 chr15 55550553 55551411 + 0 NA exon (ENSMUSG00000022370.13, exon 2 of 2) protein_coding-exon (ENSMUSG00000022370.13, exon 2 of 2) 6766 ENSMUSG00000022370.13 ENSMUSG00000022370 ENSMUST00000170135 Mrpl13 protein_coding Interval_84365 chr19 10394094 10395446 + 0 NA intron (ENSMUSG00000024743.16, intron 1 of 2) protein_coding-intron (ENSMUSG00000024743.16, intron 1 of 8) 5287 ENSMUSG00000024743.16 ENSMUSG00000024743 ENSMUST00000235717 Syt7 protein_coding Interval_109873 chr3 149274234 149275713 + 0 NA Intergenic Intergenic -29856 ENSMUSG00000105797.1 ENSMUSG00000105797 ENSMUST00000199768 Gm5149 lincRNA Interval_66400 chr16 33636169 33636970 + 0 NA intron (ENSMUSG00000035506.16, intron 9 of 10) protein_coding-intron (ENSMUSG00000035506.16, intron 9 of 12) 20179 ENSMUSG00000035506.16 ENSMUSG00000035506 ENSMUST00000149291 Slc12a8 protein_coding Interval_136021 chr6 49831530 49831871 + 0 NA Intergenic Intergenic 8990 ENSMUSG00000029819.6 ENSMUSG00000029819 ENSMUST00000031843 Npy protein_coding Interval_62877 chr15 97663329 97664356 + 0 NA Intergenic Intergenic 16511 ENSMUSG00000022466.6 ENSMUSG00000022466 ENSMUST00000229008 Rpap3 protein_coding Interval_31922 chr11 103884919 103885166 + 0 NA intron (ENSMUSG00000034187.18, intron 8 of 8) protein_coding-intron (ENSMUSG00000034187.18, intron 8 of 20) -4799 ENSMUSG00000092540.1 ENSMUSG00000092540 ENSMUST00000172606 Gm8738 processed_pseudogene Interval_42622 chr13 17028305 17029375 + 0 NA intron (ENSMUSG00000055137.7, intron 12 of 13) protein_coding-intron (ENSMUSG00000055137.7, intron 12 of 13) -22081 ENSMUSG00000098218.1 ENSMUSG00000098218 ENSMUST00000182807 Gm27043 processed_pseudogene Interval_174121 chrX 135791444 135791775 + 0 NA intron (ENSMUSG00000043384.15, intron 5 of 9) protein_coding-intron (ENSMUSG00000043384.15, intron 4 of 10) -5392 ENSMUSG00000088464.1 ENSMUSG00000088464 ENSMUST00000157839 Mir1970 miRNA Interval_74359 chr17 49432141 49433128 + 0 NA promoter-TSS (ENSMUSG00000064120.14) protein_coding-promoter-TSS (ENSMUSG00000064120.14) -3394 ENSMUSG00000092268.1 ENSMUSG00000092268 ENSMUST00000172972 Gm20540 processed_transcript Interval_51997 chr14 34501954 34503410 + 0 NA promoter-TSS (ENSMUSG00000021796.15) protein_coding-promoter-TSS (ENSMUSG00000021796.15) -154 ENSMUSG00000021796.15 ENSMUSG00000021796 ENSMUST00000171551 Bmpr1a protein_coding Interval_156739 chr8 57760859 57761466 + 0 NA Intergenic Intergenic 61388 ENSMUSG00000110162.1 ENSMUSG00000110162 ENSMUST00000209274 Gm45356 lincRNA Interval_55506 chr14 89582599 89582831 + 0 NA Intergenic Intergenic -124090 ENSMUSG00000077408.1 ENSMUSG00000077408 ENSMUST00000104220 Gm25415 snoRNA Interval_75634 chr17 69563088 69563748 + 0 NA Intergenic Intergenic -6988 ENSMUSG00000117071.1 ENSMUSG00000117071 ENSMUST00000233261 Gm9598 processed_pseudogene Interval_63634 chr15 102458830 102460239 + 0 NA promoter-TSS (ENSMUSG00000023048.13) protein_coding-promoter-TSS (ENSMUSG00000023048.13) 302 ENSMUSG00000023048.13 ENSMUSG00000023048 ENSMUST00000164688 Prr13 protein_coding Interval_61446 chr15 81670270 81670661 + 0 NA TTS (ENSMUSG00000022394.14) protein_coding-TTS (ENSMUSG00000022394.14) 4413 ENSMUSG00000092325.2 ENSMUSG00000092325 ENSMUST00000172604 Gm18284 processed_pseudogene Interval_45013 chr13 51423813 51425300 + 0 NA Intergenic Intergenic -5870 ENSMUSG00000112959.1 ENSMUSG00000112959 ENSMUST00000220470 Gm32834 lincRNA Interval_128206 chr5 111728310 111728778 + 0 NA Intergenic Intergenic -5380 ENSMUSG00000096949.1 ENSMUSG00000096949 ENSMUST00000180627 Gm26897 protein_coding Interval_144256 chr7 24073337 24075596 + 0 NA intron (ENSMUSG00000108960.1, intron 1 of 3) unprocessed_pseudogene-intron (ENSMUSG00000108960.1, intron 1 of 3) 551 ENSMUSG00000108960.1 ENSMUSG00000108960 ENSMUST00000207254 Gm44943 unprocessed_pseudogene Interval_57653 chr15 13393087 13393628 + 0 NA Intergenic Intergenic 25499 ENSMUSG00000115347.1 ENSMUSG00000115347 ENSMUST00000227992 Gm8238 processed_pseudogene Interval_11473 chr1 182081289 182082635 + 0 NA Intergenic Intergenic 10559 ENSMUSG00000103379.1 ENSMUSG00000103379 ENSMUST00000193768 Gm37177 processed_pseudogene Interval_160047 chr8 106010473 106011945 + 0 NA promoter-TSS (ENSMUSG00000031901.12) protein_coding-promoter-TSS (ENSMUSG00000031901.12) 673 ENSMUSG00000045538.6 ENSMUSG00000045538 ENSMUST00000058579 Ddx28 protein_coding Interval_130932 chr5 134125354 134125771 + 0 NA intron (ENSMUSG00000015944.9, intron 1 of 8) protein_coding-intron (ENSMUSG00000015944.9, intron 1 of 8) 25557 ENSMUSG00000015944.9 ENSMUSG00000015944 ENSMUST00000140240 Castor2 protein_coding Interval_73047 chr17 34383206 34383625 + 0 NA intron (ENSMUSG00000062638.11, intron 8 of 9) protein_coding-intron (ENSMUSG00000062638.11, intron 8 of 9) 5529 ENSMUSG00000062638.11 ENSMUSG00000062638 ENSMUST00000236230 Btnl1 protein_coding Interval_123673 chr5 34430579 34430886 + 0 NA promoter-TSS (ENSMUSG00000037210.16) protein_coding-promoter-TSS (ENSMUSG00000037210.16) -487 ENSMUSG00000037210.16 ENSMUSG00000037210 ENSMUST00000181379 Fam193a protein_coding Interval_84467 chr19 11324257 11324635 + 0 NA exon (ENSMUSG00000024672.11, exon 5 of 7) protein_coding-exon (ENSMUSG00000024672.11, exon 5 of 7) -9992 ENSMUSG00000099398.1 ENSMUSG00000099398 ENSMUST00000187467 Ms4a14 protein_coding Interval_25923 chr11 52618283 52619236 + 0 NA Intergenic Intergenic -131449 ENSMUSG00000083129.1 ENSMUSG00000083129 ENSMUST00000118245 Gm12210 processed_pseudogene Interval_160050 chr8 106033635 106033871 + 0 NA exon (ENSMUSG00000031901.12, exon 6 of 16) protein_coding-exon (ENSMUSG00000031901.12, exon 6 of 16) -14955 ENSMUSG00000031901.12 ENSMUSG00000031901 ENSMUST00000144904 Dus2 protein_coding Interval_151134 chr7 118755238 118755521 + 0 NA exon (ENSMUSG00000030982.19, exon 1 of 1) protein_coding-exon (ENSMUSG00000030982.19, exon 1 of 1) -12638 ENSMUSG00000109303.1 ENSMUSG00000109303 ENSMUST00000208351 Gm44549 sense_intronic Interval_112971 chr4 46526578 46527800 + 0 NA intron (ENSMUSG00000039853.18, intron 2 of 4) protein_coding-intron (ENSMUSG00000039853.18, intron 2 of 5) -8712 ENSMUSG00000085990.1 ENSMUSG00000085990 ENSMUST00000132432 Gm16731 processed_transcript Interval_63106 chr15 99106188 99107145 + 0 NA Intergenic Intergenic 13496 ENSMUSG00000038009.7 ENSMUSG00000038009 ENSMUST00000061295 Dnajc22 protein_coding Interval_124307 chr5 43812511 43813028 + 0 NA intron (ENSMUSG00000039753.16, intron 1 of 10) protein_coding-intron (ENSMUSG00000039753.16, intron 1 of 10) -4026 ENSMUSG00000104701.1 ENSMUSG00000104701 ENSMUST00000199304 Gm42555 lincRNA Interval_110560 chr4 3902661 3902859 + 0 NA exon (ENSMUSG00000003282.9, exon 6 of 6) protein_coding-exon (ENSMUSG00000003282.9, exon 6 of 6) -30655 ENSMUSG00000078365.5 ENSMUSG00000078365 ENSMUST00000105158 Mos protein_coding Interval_35210 chr12 18226772 18227306 + 0 NA TTS (ENSMUSG00000113956.1) processed_pseudogene-TTS (ENSMUSG00000113956.1) 7110 ENSMUSG00000113736.1 ENSMUSG00000113736 ENSMUST00000220759 Gm40879 unprocessed_pseudogene Interval_145081 chr7 29928681 29929561 + 0 NA exon (ENSMUSG00000109105.1, exon 1 of 1) TEC-exon (ENSMUSG00000109105.1, exon 1 of 1) 2143 ENSMUSG00000109105.1 ENSMUSG00000109105 ENSMUST00000208490 Gm44873 TEC Interval_117825 chr4 126450187 126450711 + 0 NA intron (ENSMUSG00000041530.17, intron 11 of 18) protein_coding-intron (ENSMUSG00000041530.17, intron 11 of 18) 17972 ENSMUSG00000041530.17 ENSMUSG00000041530 ENSMUST00000149425 Ago1 protein_coding Interval_139043 chr6 94543783 94544775 + 0 NA intron (ENSMUSG00000045100.11, intron 4 of 6) protein_coding-intron (ENSMUSG00000045100.11, intron 5 of 9) 43730 ENSMUSG00000045100.11 ENSMUSG00000045100 ENSMUST00000203484 Slc25a26 protein_coding Interval_105798 chr3 89382075 89383449 + 0 NA intron (ENSMUSG00000028042.15, intron 2 of 2) protein_coding-intron (ENSMUSG00000028042.15, intron 1 of 2) 10616 ENSMUSG00000028042.15 ENSMUSG00000028042 ENSMUST00000139094 Zbtb7b protein_coding Interval_34784 chr12 11178127 11179068 + 0 NA Intergenic Intergenic 25784 ENSMUSG00000112041.1 ENSMUSG00000112041 ENSMUST00000218368 9530020I12Rik lincRNA Interval_83899 chr19 5447363 5448870 + 0 NA intron (ENSMUSG00000024912.6, intron 2 of 2) protein_coding-intron (ENSMUSG00000024912.6, intron 1 of 3) 411 ENSMUSG00000024912.6 ENSMUSG00000024912 ENSMUST00000235958 Fosl1 protein_coding Interval_145989 chr7 42878000 42878720 + 0 NA promoter-TSS (ENSMUSG00000092191.1) processed_pseudogene-promoter-TSS (ENSMUSG00000092191.1) -236 ENSMUSG00000092191.1 ENSMUSG00000092191 ENSMUST00000172692 Gm7211 processed_pseudogene Interval_159674 chr8 96603368 96603588 + 0 NA Intergenic Intergenic -52651 ENSMUSG00000077938.1 ENSMUSG00000077938 ENSMUST00000104745 Gm24132 miRNA Interval_49286 chr13 110279722 110280975 + 0 NA promoter-TSS (ENSMUSG00000021700.10) protein_coding-promoter-TSS (ENSMUSG00000021700.10) -198 ENSMUSG00000021700.10 ENSMUSG00000021700 ENSMUST00000226040 Rab3c protein_coding Interval_158247 chr8 80492643 80493933 + 0 NA promoter-TSS (ENSMUSG00000051839.7) protein_coding-promoter-TSS (ENSMUSG00000051839.7) -493 ENSMUSG00000051839.7 ENSMUSG00000051839 ENSMUST00000063359 Gypa protein_coding Interval_7028 chr1 122637026 122637788 + 0 NA Intergenic Intergenic 84234 ENSMUSG00000089190.1 ENSMUSG00000089190 ENSMUST00000158565 Gm25771 snoRNA Interval_136724 chr6 58614625 58614804 + 0 NA intron (ENSMUSG00000029802.13, intron 2 of 2) protein_coding-intron (ENSMUSG00000029802.13, intron 1 of 15) -25868 ENSMUSG00000029802.13 ENSMUSG00000029802 ENSMUST00000134426 Abcg2 protein_coding Interval_104444 chr3 65743039 65744500 + 0 NA intron (ENSMUSG00000074579.14, intron 6 of 12) protein_coding-intron (ENSMUSG00000074579.14, intron 6 of 6) 27848 ENSMUSG00000065330.1 ENSMUSG00000065330 ENSMUST00000083396 Gm25755 snRNA Interval_172741 chrX 48181622 48181851 + 0 NA TTS (ENSMUSG00000036985.12) protein_coding-TTS (ENSMUSG00000036985.12) 26922 ENSMUSG00000036985.12 ENSMUSG00000036985 ENSMUST00000149416 Zdhhc9 protein_coding Interval_72831 chr17 32442071 32443390 + 0 NA Intergenic Intergenic -9993 ENSMUSG00000061126.5 ENSMUSG00000061126 ENSMUST00000235903 Cyp4f39 protein_coding Interval_32845 chr11 111843381 111844899 + 0 NA Intergenic Intergenic -43264 ENSMUSG00000086752.1 ENSMUSG00000086752 ENSMUST00000124855 Gm11674 lincRNA Interval_52078 chr14 35234074 35234324 + 0 NA intron (ENSMUSG00000041078.7, intron 4 of 15) protein_coding-intron (ENSMUSG00000041078.7, intron 4 of 15) -14761 ENSMUSG00000115826.1 ENSMUSG00000115826 ENSMUST00000227262 Gm49034 processed_pseudogene Interval_5847 chr1 92501560 92501975 + 0 NA Intergenic Intergenic -5689 ENSMUSG00000057464.4 ENSMUSG00000057464 ENSMUST00000204766 Olfr1415 protein_coding Interval_129410 chr5 119807727 119807956 + 0 NA promoter-TSS (ENSMUSG00000107053.1) lincRNA-promoter-TSS (ENSMUSG00000107053.1) 28 ENSMUSG00000107053.1 ENSMUSG00000107053 ENSMUST00000202127 1700021F13Rik lincRNA Interval_37938 chr12 73163859 73164238 + 0 NA intron (ENSMUSG00000021103.12, intron 1 of 6) protein_coding-intron (ENSMUSG00000021103.12, intron 1 of 7) -18143 ENSMUSG00000077785.1 ENSMUSG00000077785 ENSMUST00000104597 Gm23910 snoRNA Interval_17753 chr10 79902891 79903153 + 0 NA TTS (ENSMUSG00000013833.15) protein_coding-TTS (ENSMUSG00000013833.15) 5901 ENSMUSG00000013833.15 ENSMUSG00000013833 ENSMUST00000170409 Med16 protein_coding Interval_12873 chr10 7148565 7149003 + 0 NA intron (ENSMUSG00000015202.13, intron 4 of 12) protein_coding-intron (ENSMUSG00000015202.13, intron 4 of 12) -13278 ENSMUSG00000015202.13 ENSMUSG00000015202 ENSMUST00000015346 Cnksr3 protein_coding Interval_42366 chr13 12401521 12401823 + 0 NA intron (ENSMUSG00000050244.9, intron 6 of 9) protein_coding-intron (ENSMUSG00000050244.9, intron 6 of 44) 6645 ENSMUSG00000050244.9 ENSMUSG00000050244 ENSMUST00000221616 Heatr1 protein_coding Interval_47254 chr13 79789156 79789366 + 0 NA Intergenic Intergenic -48816 ENSMUSG00000114505.1 ENSMUSG00000114505 ENSMUST00000223593 Gm48471 processed_pseudogene Interval_77430 chr17 88640039 88641974 + 0 NA intron (ENSMUSG00000033855.15, intron 2 of 3) protein_coding-intron (ENSMUSG00000033855.15, intron 2 of 4) 14451 ENSMUSG00000033855.15 ENSMUSG00000033855 ENSMUST00000112216 Ston1 protein_coding Interval_5797 chr1 91919814 91920960 + 0 NA TTS (ENSMUSG00000102745.1) TEC-TTS (ENSMUSG00000102745.1) 4127 ENSMUSG00000102745.1 ENSMUSG00000102745 ENSMUST00000193764 Gm37600 TEC Interval_174387 chrX 151040787 151041893 + 0 NA Intergenic Intergenic -24018 ENSMUSG00000025266.11 ENSMUSG00000025266 ENSMUST00000156233 Gnl3l protein_coding Interval_90155 chr2 28606981 28608127 + 0 NA promoter-TSS (ENSMUSG00000078061.1) miRNA-promoter-TSS (ENSMUSG00000078061.1) -641 ENSMUSG00000078061.1 ENSMUSG00000078061 ENSMUST00000104867 Gm22824 miRNA Interval_110640 chr4 5648108 5650197 + 0 NA intron (ENSMUSG00000049119.14, intron 1 of 1) protein_coding-intron (ENSMUSG00000049119.14, intron 1 of 2) 16824 ENSMUSG00000086066.7 ENSMUSG00000086066 ENSMUST00000130895 4930423M02Rik lincRNA Interval_140080 chr6 113890960 113892561 + 0 NA promoter-TSS (ENSMUSG00000030302.16) protein_coding-promoter-TSS (ENSMUSG00000030302.16) -221 ENSMUSG00000030302.16 ENSMUSG00000030302 ENSMUST00000154738 Atp2b2 protein_coding Interval_164209 chr9 32548791 32549733 + 0 NA Intergenic Intergenic -6401 ENSMUSG00000016087.13 ENSMUSG00000016087 ENSMUST00000183767 Fli1 protein_coding Interval_14235 chr10 29312755 29314026 + 0 NA promoter-TSS (ENSMUSG00000019883.11) protein_coding-promoter-TSS (ENSMUSG00000019883.11) 17 ENSMUSG00000110830.1 ENSMUSG00000110830 ENSMUST00000215520 Gm46218 antisense Interval_91453 chr2 38975378 38977009 + 0 NA intron (ENSMUSG00000084184.1, intron 6 of 6) unprocessed_pseudogene-intron (ENSMUSG00000084184.1, intron 6 of 6) 2246 ENSMUSG00000084184.1 ENSMUSG00000084184 ENSMUST00000122466 Gm13474 unprocessed_pseudogene Interval_74829 chr17 56767928 56768563 + 0 NA exon (ENSMUSG00000007603.9, exon 6 of 10) protein_coding-exon (ENSMUSG00000007603.9, exon 6 of 10) -2005 ENSMUSG00000090273.3 ENSMUSG00000090273 ENSMUST00000168666 Prr22 protein_coding Interval_155168 chr8 27177182 27177799 + 0 NA Intergenic Intergenic -2849 ENSMUSG00000031488.14 ENSMUSG00000031488 ENSMUST00000211646 Rab11fip1 protein_coding Interval_50603 chr14 16414082 16414333 + 0 NA intron (ENSMUSG00000017485.11, intron 2 of 8) protein_coding-intron (ENSMUSG00000017485.11, intron 25 of 35) -8979 ENSMUSG00000017485.11 ENSMUSG00000017485 ENSMUST00000224460 Top2b protein_coding Interval_20128 chr10 115160160 115160942 + 0 NA intron (ENSMUSG00000006764.8, intron 5 of 10) protein_coding-intron (ENSMUSG00000006764.8, intron 5 of 10) 15007 ENSMUSG00000006764.8 ENSMUSG00000006764 ENSMUST00000155794 Tph2 protein_coding Interval_55027 chr14 77156200 77158052 + 0 NA intron (ENSMUSG00000022012.9, intron 1 of 2) protein_coding-intron (ENSMUSG00000022012.9, intron 1 of 18) 95188 ENSMUSG00000063556.5 ENSMUSG00000063556 ENSMUST00000099431 Gm10132 processed_pseudogene Interval_162073 chr8 124888388 124888637 + 0 NA intron (ENSMUSG00000031985.9, intron 5 of 5) protein_coding-intron (ENSMUSG00000031985.9, intron 15 of 15) 5066 ENSMUSG00000031985.9 ENSMUSG00000031985 ENSMUST00000159864 Gnpat protein_coding Interval_116722 chr4 116844377 116844782 + 0 NA Intergenic Intergenic -4358 ENSMUSG00000075390.5 ENSMUSG00000075390 ENSMUST00000121187 Rpl36-ps8 processed_pseudogene Interval_39663 chr12 91877783 91878433 + 0 NA Intergenic Intergenic -4465 ENSMUSG00000113676.1 ENSMUSG00000113676 ENSMUST00000222677 Gm18621 processed_pseudogene Interval_24004 chr11 29362599 29362962 + 0 NA Intergenic Intergenic 8581 ENSMUSG00000082721.1 ENSMUSG00000082721 ENSMUST00000121878 Gm12087 processed_pseudogene Interval_38794 chr12 82391208 82391430 + 0 NA intron (ENSMUSG00000042700.16, intron 8 of 21) protein_coding-intron (ENSMUSG00000042700.16, intron 7 of 20) 105218 ENSMUSG00000094374.2 ENSMUSG00000094374 ENSMUST00000179295 Gm5435 processed_pseudogene Interval_11291 chr1 180785169 180785566 + 0 NA Intergenic Intergenic -16711 ENSMUSG00000103156.1 ENSMUSG00000103156 ENSMUST00000193209 Gm38293 lincRNA Interval_135791 chr6 47358786 47359318 + 0 NA Intergenic Intergenic 74037 ENSMUSG00000107853.1 ENSMUSG00000107853 ENSMUST00000203098 Gm18584 processed_pseudogene Interval_94747 chr2 93964654 93966255 + 0 NA intron (ENSMUSG00000098004.1, intron 1 of 2) protein_coding-intron (ENSMUSG00000098004.1, intron 1 of 2) -8405 ENSMUSG00000087006.3 ENSMUSG00000087006 ENSMUST00000099689 Gm13889 protein_coding Interval_24438 chr11 33252195 33252547 + 0 NA intron (ENSMUSG00000040594.19, intron 24 of 27) protein_coding-intron (ENSMUSG00000040594.19, intron 24 of 27) 24366 ENSMUSG00000098456.1 ENSMUSG00000098456 ENSMUST00000183831 Gm12117 protein_coding Interval_39960 chr12 100119093 100119758 + 0 NA promoter-TSS (ENSMUSG00000021178.9) protein_coding-promoter-TSS (ENSMUSG00000021178.9) 9210 ENSMUSG00000021178.9 ENSMUSG00000021178 ENSMUST00000221308 Psmc1 protein_coding Interval_110042 chr3 152728400 152728728 + 0 NA intron (ENSMUSG00000039047.17, intron 3 of 7) protein_coding-intron (ENSMUSG00000039047.17, intron 3 of 11) 14441 ENSMUSG00000039047.17 ENSMUSG00000039047 ENSMUST00000160651 Pigk protein_coding Interval_116312 chr4 109656658 109658153 + 0 NA TTS (ENSMUSG00000087641.1) processed_transcript-TTS (ENSMUSG00000087641.1) 422 ENSMUSG00000059027.14 ENSMUSG00000059027 ENSMUST00000126635 9630013D21Rik processed_transcript Interval_89977 chr2 26997504 26997708 + 0 NA intron (ENSMUSG00000014852.16, intron 23 of 28) protein_coding-intron (ENSMUSG00000014852.16, intron 23 of 23) -8965 ENSMUSG00000014852.16 ENSMUSG00000014852 ENSMUST00000147216 Adamts13 protein_coding Interval_44305 chr13 43514658 43515653 + 0 NA Intergenic Intergenic -5913 ENSMUSG00000113177.1 ENSMUSG00000113177 ENSMUST00000222428 Gm7214 processed_pseudogene Interval_94352 chr2 90449069 90449323 + 0 NA intron (ENSMUSG00000025314.16, intron 17 of 23) protein_coding-intron (ENSMUSG00000025314.16, intron 15 of 21) -30054 ENSMUSG00000085471.1 ENSMUSG00000085471 ENSMUST00000126953 4933423P22Rik antisense Interval_81596 chr18 61967449 61968336 + 0 NA intron (ENSMUSG00000045629.8, intron 2 of 16) protein_coding-intron (ENSMUSG00000045629.8, intron 2 of 16) -10067 ENSMUSG00000045629.8 ENSMUSG00000045629 ENSMUST00000236759 Sh3tc2 protein_coding Interval_152231 chr7 130796591 130797317 + 0 NA intron (ENSMUSG00000040298.6, intron 8 of 15) protein_coding-intron (ENSMUSG00000040298.6, intron 8 of 15) 22787 ENSMUSG00000040298.6 ENSMUSG00000040298 ENSMUST00000208593 Btbd16 protein_coding Interval_362 chr1 4567189 4567937 + 0 NA Intergenic Intergenic 18689 ENSMUSG00000104328.1 ENSMUSG00000104328 ENSMUST00000195771 Gm37323 lincRNA Interval_90366 chr2 30020912 30021211 + 0 NA promoter-TSS (ENSMUSG00000057738.14) protein_coding-promoter-TSS (ENSMUSG00000057738.14) 25111 ENSMUSG00000098453.1 ENSMUSG00000098453 ENSMUST00000184313 Mir6997 miRNA Interval_90561 chr2 31151864 31153084 + 0 NA promoter-TSS (ENSMUSG00000087269.1) processed_transcript-promoter-TSS (ENSMUSG00000087269.1) 123 ENSMUSG00000000194.13 ENSMUSG00000000194 ENSMUST00000169333 Gpr107 protein_coding Interval_160967 chr8 116504189 116505114 + 0 NA promoter-TSS (ENSMUSG00000034467.7) protein_coding-promoter-TSS (ENSMUSG00000034467.7) -323 ENSMUSG00000034467.7 ENSMUSG00000034467 ENSMUST00000078170 Dynlrb2 protein_coding Interval_96643 chr2 126748862 126749058 + 0 NA intron (ENSMUSG00000027363.15, intron 11 of 16) protein_coding-intron (ENSMUSG00000027363.15, intron 13 of 18) 34498 ENSMUSG00000027364.14 ENSMUSG00000027364 ENSMUST00000151140 Usp50 protein_coding Interval_88276 chr2 3218939 3219177 + 0 NA intron (ENSMUSG00000050530.14, intron 5 of 7) protein_coding-intron (ENSMUSG00000050530.14, intron 5 of 7) -65223 ENSMUSG00000026643.16 ENSMUSG00000026643 ENSMUST00000155761 Nmt2 protein_coding Interval_32108 chr11 105278749 105278979 + 0 NA intron (ENSMUSG00000020694.17, intron 18 of 19) protein_coding-intron (ENSMUSG00000020694.17, intron 19 of 20) -61968 ENSMUSG00000020695.14 ENSMUSG00000020695 ENSMUST00000151135 Mrc2 protein_coding Interval_117519 chr4 124345692 124346631 + 0 NA Intergenic Intergenic -10480 ENSMUSG00000088933.1 ENSMUSG00000088933 ENSMUST00000158308 Gm22983 snRNA Interval_50852 chr14 20208467 20208964 + 0 NA Intergenic Intergenic -6787 ENSMUSG00000114439.1 ENSMUSG00000114439 ENSMUST00000223732 Gm48395 lincRNA Interval_86779 chr19 43832178 43833193 + 0 NA intron (ENSMUSG00000025194.5, intron 29 of 31) protein_coding-intron (ENSMUSG00000025194.5, intron 29 of 31) 22163 ENSMUSG00000025194.5 ENSMUSG00000025194 ENSMUST00000099413 Abcc2 protein_coding Interval_102269 chr3 20154468 20155313 + 0 NA intron (ENSMUSG00000019528.18, intron 1 of 7) protein_coding-intron (ENSMUSG00000019528.18, intron 1 of 6) 179 ENSMUSG00000019528.18 ENSMUSG00000019528 ENSMUST00000135475 Gyg protein_coding Interval_23068 chr11 19627387 19627623 + 0 NA exon (ENSMUSG00000086911.1, exon 1 of 2) lincRNA-exon (ENSMUSG00000086911.1, exon 1 of 2) 556 ENSMUSG00000086911.1 ENSMUSG00000086911 ENSMUST00000146531 Gm12027 lincRNA Interval_14213 chr10 28954128 28955413 + 0 NA promoter-TSS (ENSMUSG00000088093.1) ribozyme-promoter-TSS (ENSMUSG00000088093.1) -468 ENSMUSG00000088093.1 ENSMUSG00000088093 ENSMUST00000157468 Gm22811 ribozyme Interval_125515 chr5 67849749 67850059 + 0 NA intron (ENSMUSG00000087261.2, intron 1 of 3) antisense-intron (ENSMUSG00000087261.2, intron 1 of 2) 2839 ENSMUSG00000087261.2 ENSMUSG00000087261 ENSMUST00000140578 Gm15477 antisense Interval_170638 chr9 109832089 109833335 + 0 NA promoter-TSS (ENSMUSG00000032478.14) protein_coding-promoter-TSS (ENSMUSG00000032478.14) -10 ENSMUSG00000070282.6 ENSMUSG00000070282 ENSMUST00000133495 3000002C10Rik transcribed_processed_pseudogene Interval_143457 chr7 6940701 6941471 + 0 NA intron (ENSMUSG00000051527.11, intron 6 of 8) protein_coding-intron (ENSMUSG00000051527.11, intron 5 of 7) 34378 ENSMUSG00000108043.2 ENSMUSG00000108043 ENSMUST00000203351 Zim3 antisense Interval_108877 chr3 132915167 132916386 + 0 NA intron (ENSMUSG00000040998.18, intron 3 of 12) protein_coding-intron (ENSMUSG00000040998.18, intron 4 of 12) -9417 ENSMUSG00000040998.18 ENSMUSG00000040998 ENSMUST00000132732 Npnt protein_coding Interval_140403 chr6 117879021 117880226 + 0 NA Intergenic Intergenic 16546 ENSMUSG00000042097.17 ENSMUSG00000042097 ENSMUST00000112857 Zfp239 protein_coding Interval_105600 chr3 88010643 88011149 + 0 NA Intergenic Intergenic 12777 ENSMUSG00000004894.10 ENSMUSG00000004894 ENSMUST00000160150 Hapln2 protein_coding Interval_170930 chr9 112429023 112430831 + 0 NA intron (ENSMUSG00000110876.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000110876.1, intron 1 of 1) 31703 ENSMUSG00000110876.1 ENSMUSG00000110876 ENSMUST00000216779 4933411E02Rik lincRNA Interval_146096 chr7 43856046 43857638 + 0 NA exon (ENSMUSG00000108781.1, exon 1 of 2) lincRNA-exon (ENSMUSG00000108781.1, exon 1 of 2) 571 ENSMUSG00000108781.1 ENSMUSG00000108781 ENSMUST00000206293 Gm44707 lincRNA Interval_139254 chr6 97586907 97587116 + 0 NA intron (ENSMUSG00000030064.16, intron 1 of 7) protein_coding-intron (ENSMUSG00000030064.16, intron 1 of 23) -5919 ENSMUSG00000108093.1 ENSMUSG00000108093 ENSMUST00000204031 Gm44102 TEC Interval_104983 chr3 79505854 79506066 + 0 NA TTS (ENSMUSG00000061175.12) protein_coding-TTS (ENSMUSG00000061175.12) 25916 ENSMUSG00000061175.12 ENSMUSG00000061175 ENSMUST00000139171 Fnip2 protein_coding Interval_115463 chr4 99174179 99175085 + 0 NA Intergenic Intergenic -12990 ENSMUSG00000086498.1 ENSMUSG00000086498 ENSMUST00000132337 Gm12681 lincRNA Interval_58740 chr15 37592140 37592554 + 0 NA intron (ENSMUSG00000051359.15, intron 1 of 5) protein_coding-intron (ENSMUSG00000051359.15, intron 2 of 6) 11187 ENSMUSG00000080425.1 ENSMUSG00000080425 ENSMUST00000116775 Gm24833 snRNA Interval_81909 chr18 65767107 65767455 + 0 NA Intergenic Intergenic -33274 ENSMUSG00000024516.13 ENSMUSG00000024516 ENSMUST00000235765 Sec11c protein_coding Interval_41464 chr12 114513593 114513800 + 0 NA promoter-TSS (ENSMUSG00000096499.2) IG_V_gene-promoter-TSS (ENSMUSG00000096499.2) -2 ENSMUSG00000098357.1 ENSMUSG00000098357 ENSMUST00000184622 Mir7094-2 miRNA Interval_71238 chr17 21504494 21505685 + 0 NA exon (ENSMUSG00000057409.7, exon 3 of 4) protein_coding-exon (ENSMUSG00000057409.7, exon 3 of 4) 16091 ENSMUSG00000057409.7 ENSMUSG00000057409 ENSMUST00000076664 Zfp53 protein_coding Interval_50404 chr14 12542325 12542968 + 0 NA promoter-TSS (ENSMUSG00000054423.14) protein_coding-promoter-TSS (ENSMUSG00000054423.14) -76022 ENSMUSG00000114453.1 ENSMUSG00000114453 ENSMUST00000225784 Gm17805 processed_pseudogene Interval_39947 chr12 100016445 100017231 + 0 NA intron (ENSMUSG00000045404.16, intron 2 of 2) protein_coding-intron (ENSMUSG00000045404.16, intron 2 of 2) -33986 ENSMUSG00000093352.1 ENSMUSG00000093352 ENSMUST00000175611 Gm23291 miRNA Interval_70813 chr17 14934489 14935888 + 0 NA promoter-TSS (ENSMUSG00000046991.12) protein_coding-promoter-TSS (ENSMUSG00000046991.12) -6777 ENSMUSG00000092577.1 ENSMUSG00000092577 ENSMUST00000172650 Gm7393 processed_pseudogene Interval_92411 chr2 59598684 59600209 + 0 NA Intergenic Intergenic -34762 ENSMUSG00000081157.1 ENSMUSG00000081157 ENSMUST00000118837 Gm13552 processed_pseudogene Interval_19865 chr10 110707921 110708609 + 0 NA Intergenic Intergenic -37200 ENSMUSG00000020185.16 ENSMUSG00000020185 ENSMUST00000174593 E2f7 protein_coding Interval_33283 chr11 115699080 115700004 + 0 NA promoter-TSS (ENSMUSG00000059923.13) protein_coding-promoter-TSS (ENSMUSG00000059923.13) 386 ENSMUSG00000059923.13 ENSMUSG00000059923 ENSMUST00000135065 Grb2 protein_coding Interval_29745 chr11 86532500 86533418 + 0 NA promoter-TSS (ENSMUSG00000020516.15) protein_coding-promoter-TSS (ENSMUSG00000020516.15) 11846 ENSMUSG00000020516.15 ENSMUSG00000020516 ENSMUST00000138810 Rps6kb1 protein_coding Interval_150929 chr7 116386788 116387818 + 0 NA TTS (ENSMUSG00000030660.9) protein_coding-TTS (ENSMUSG00000030660.9) 12414 ENSMUSG00000108500.1 ENSMUSG00000108500 ENSMUST00000206710 Gm45033 TEC Interval_51535 chr14 29949825 29951577 + 0 NA Intergenic Intergenic 10680 ENSMUSG00000114424.1 ENSMUSG00000114424 ENSMUST00000223774 Gm47414 lincRNA Interval_68238 chr16 70313661 70314820 + 0 NA exon (ENSMUSG00000022707.16, exon 1 of 17) protein_coding-exon (ENSMUSG00000022707.16, exon 1 of 17) 176 ENSMUSG00000022707.16 ENSMUSG00000022707 ENSMUST00000169432 Gbe1 protein_coding Interval_53561 chr14 59246192 59246807 + 0 NA intron (ENSMUSG00000090881.3, intron 4 of 5) unprocessed_pseudogene-intron (ENSMUSG00000090881.3, intron 4 of 5) 13681 ENSMUSG00000090881.3 ENSMUSG00000090881 ENSMUST00000224042 Phf11 unprocessed_pseudogene Interval_119948 chr4 141076916 141077153 + 0 NA intron (ENSMUSG00000028923.14, intron 1 of 7) protein_coding-intron (ENSMUSG00000028923.14, intron 1 of 7) -3329 ENSMUSG00000028923.14 ENSMUSG00000028923 ENSMUST00000144813 Necap2 protein_coding Interval_125166 chr5 65028183 65029021 + 0 NA intron (ENSMUSG00000029185.14, intron 9 of 13) protein_coding-intron (ENSMUSG00000029185.14, intron 9 of 13) 55952 ENSMUSG00000106186.1 ENSMUSG00000106186 ENSMUST00000197119 Gm43627 TEC Interval_110213 chr3 154364633 154365601 + 0 NA Intergenic Intergenic 33120 ENSMUSG00000093738.2 ENSMUSG00000093738 ENSMUST00000181234 AI606473 processed_transcript Interval_104526 chr3 67446820 67447397 + 0 NA intron (ENSMUSG00000027774.16, intron 8 of 13) protein_coding-intron (ENSMUSG00000027774.16, intron 8 of 17) 14526 ENSMUSG00000047557.2 ENSMUSG00000047557 ENSMUST00000160202 Lxn protein_coding Interval_2622 chr1 42490972 42492362 + 0 NA promoter-TSS (ENSMUSG00000103106.1) TEC-promoter-TSS (ENSMUSG00000103106.1) -146 ENSMUSG00000103106.1 ENSMUSG00000103106 ENSMUST00000191992 Gm37047 TEC Interval_139331 chr6 98971943 98972486 + 0 NA intron (ENSMUSG00000030067.17, intron 6 of 14) protein_coding-intron (ENSMUSG00000030067.17, intron 7 of 15) 72228 ENSMUSG00000030067.17 ENSMUSG00000030067 ENSMUST00000175838 Foxp1 protein_coding Interval_15396 chr10 45439790 45439997 + 0 NA intron (ENSMUSG00000063804.8, intron 2 of 3) protein_coding-intron (ENSMUSG00000063804.8, intron 2 of 4) 46502 ENSMUSG00000063804.8 ENSMUSG00000063804 ENSMUST00000214555 Lin28b protein_coding Interval_70919 chr17 15962910 15963631 + 0 NA Intergenic Intergenic 117990 ENSMUSG00000116545.1 ENSMUSG00000116545 ENSMUST00000231929 Eif3s6-ps3 processed_pseudogene Interval_118197 chr4 129481825 129482404 + 0 NA intron (ENSMUSG00000040859.14, intron 9 of 10) protein_coding-intron (ENSMUSG00000040859.14, intron 9 of 10) 8908 ENSMUSG00000000411.7 ENSMUSG00000000411 ENSMUST00000000421 Tssk3 protein_coding Interval_125900 chr5 75529986 75530173 + 0 NA Intergenic Intergenic 31071 ENSMUSG00000089078.1 ENSMUSG00000089078 ENSMUST00000158453 Gm24502 snRNA Interval_9828 chr1 162725637 162725844 + 0 NA promoter-TSS (ENSMUSG00000040225.15) protein_coding-promoter-TSS (ENSMUSG00000040225.15) 4981 ENSMUSG00000040225.15 ENSMUSG00000040225 ENSMUST00000183286 Prrc2c protein_coding Interval_17574 chr10 77856717 77857179 + 0 NA intron (ENSMUSG00000069581.12, intron 2 of 11) protein_coding-intron (ENSMUSG00000069581.12, intron 2 of 11) 4086 ENSMUSG00000071195.4 ENSMUSG00000071195 ENSMUST00000217996 Gm10318 protein_coding Interval_5175 chr1 86250328 86251009 + 0 NA intron (ENSMUSG00000062590.13, intron 1 of 3) protein_coding-intron (ENSMUSG00000062590.13, intron 20 of 24) 50707 ENSMUSG00000087538.1 ENSMUSG00000087538 ENSMUST00000126385 Gm16341 antisense Interval_48023 chr13 95330631 95330827 + 0 NA TTS (ENSMUSG00000088108.1) snoRNA-TTS (ENSMUSG00000088108.1) 129 ENSMUSG00000088108.1 ENSMUSG00000088108 ENSMUST00000157483 Snora47 snoRNA Interval_124143 chr5 38648318 38648569 + 0 NA Intergenic Intergenic 36383 ENSMUSG00000046572.10 ENSMUSG00000046572 ENSMUST00000178760 Zfp518b protein_coding Interval_38812 chr12 82550896 82551288 + 0 NA Intergenic Intergenic 7456 ENSMUSG00000091668.3 ENSMUSG00000091668 ENSMUST00000167222 Gm8358 processed_pseudogene Interval_24819 chr11 39683359 39683605 + 0 NA Intergenic Intergenic 44230 ENSMUSG00000083806.1 ENSMUSG00000083806 ENSMUST00000117479 Gm12131 processed_pseudogene Interval_136035 chr6 50144397 50144983 + 0 NA intron (ENSMUSG00000038388.14, intron 2 of 6) protein_coding-intron (ENSMUSG00000038388.14, intron 2 of 13) 34412 ENSMUSG00000038388.14 ENSMUSG00000038388 ENSMUST00000167319 Mpp6 protein_coding Interval_3222 chr1 54981112 54981554 + 0 NA Intergenic Intergenic 46061 ENSMUSG00000025982.13 ENSMUSG00000025982 ENSMUST00000188419 Sf3b1 protein_coding Interval_172259 chrX 12065714 12067803 + 0 NA intron (ENSMUSG00000040363.15, intron 1 of 13) protein_coding-intron (ENSMUSG00000040363.15, intron 1 of 13) 82290 ENSMUSG00000081947.2 ENSMUSG00000081947 ENSMUST00000117924 Gm14512 processed_pseudogene Interval_100712 chr2 171887816 171888175 + 0 NA Intergenic Intergenic 74136 ENSMUSG00000086823.7 ENSMUSG00000086823 ENSMUST00000125465 1700028P15Rik processed_transcript Interval_96500 chr2 125119237 125119932 + 0 NA intron (ENSMUSG00000027201.16, intron 1 of 18) protein_coding-intron (ENSMUSG00000027201.16, intron 1 of 15) 4042 ENSMUSG00000027201.16 ENSMUSG00000027201 ENSMUST00000149911 Myef2 protein_coding Interval_10360 chr1 169950061 169951048 + 0 NA exon (ENSMUSG00000026675.12, exon 9 of 9) protein_coding-exon (ENSMUSG00000026675.12, exon 9 of 9) 15169 ENSMUSG00000026675.12 ENSMUSG00000026675 ENSMUST00000123230 Hsd17b7 protein_coding Interval_67455 chr16 48887861 48888272 + 0 NA Intergenic Intergenic 15445 ENSMUSG00000022651.6 ENSMUSG00000022651 ENSMUST00000065666 Retnlg protein_coding Interval_40024 chr12 100536911 100537331 + 0 NA Intergenic Intergenic 36855 ENSMUSG00000113687.1 ENSMUSG00000113687 ENSMUST00000223531 Gm49703 TEC Interval_117040 chr4 119167156 119167895 + 0 NA Intergenic Intergenic 6331 ENSMUSG00000045268.13 ENSMUSG00000045268 ENSMUST00000154226 Zfp691 protein_coding Interval_24809 chr11 39277316 39277824 + 0 NA Intergenic Intergenic 450142 ENSMUSG00000083806.1 ENSMUSG00000083806 ENSMUST00000117479 Gm12131 processed_pseudogene Interval_174480 chrX 153219490 153219913 + 0 NA Intergenic Intergenic -1469 ENSMUSG00000082733.1 ENSMUSG00000082733 ENSMUST00000119867 Gm15153 processed_pseudogene Interval_23971 chr11 29012047 29012734 + 0 NA Intergenic Intergenic 55666 ENSMUSG00000081695.1 ENSMUSG00000081695 ENSMUST00000121462 Rpsa-ps5 processed_pseudogene Interval_73726 chr17 43016194 43017626 + 0 NA exon (ENSMUSG00000023915.5, exon 1 of 6) protein_coding-exon (ENSMUSG00000023915.5, exon 1 of 6) 342 ENSMUSG00000023915.5 ENSMUSG00000023915 ENSMUST00000233482 Tnfrsf21 protein_coding Interval_10319 chr1 168739323 168739555 + 0 NA Intergenic Intergenic -63557 ENSMUSG00000103463.1 ENSMUSG00000103463 ENSMUST00000194611 1700063I16Rik TEC Interval_74504 chr17 52461526 52462230 + 0 NA promoter-TSS (ENSMUSG00000117035.1) lincRNA-promoter-TSS (ENSMUSG00000117035.1) -113 ENSMUSG00000117035.1 ENSMUSG00000117035 ENSMUST00000233404 Gm5094 lincRNA Interval_171883 chr9 122006536 122007208 + 0 NA intron (ENSMUSG00000111873.1, intron 1 of 1) antisense-intron (ENSMUSG00000111873.1, intron 1 of 1) 5268 ENSMUSG00000110729.1 ENSMUSG00000110729 ENSMUST00000215635 Gm47117 lincRNA Interval_118418 chr4 131287943 131288865 + 0 NA Intergenic Intergenic 49127 ENSMUSG00000088041.1 ENSMUSG00000088041 ENSMUST00000157416 Gm25261 snoRNA Interval_12975 chr10 8853549 8853745 + 0 NA intron (ENSMUSG00000015305.6, intron 1 of 3) protein_coding-intron (ENSMUSG00000015305.6, intron 1 of 19) 7796 ENSMUSG00000111165.1 ENSMUSG00000111165 ENSMUST00000214016 4930553I21Rik TEC Interval_120957 chr4 151919308 151920814 + 0 NA Intergenic Intergenic -3647 ENSMUSG00000104142.1 ENSMUSG00000104142 ENSMUST00000191938 Gm37141 TEC Interval_20008 chr10 111925138 111925986 + 0 NA Intergenic Intergenic 36548 ENSMUSG00000112628.1 ENSMUSG00000112628 ENSMUST00000217819 Gm47880 processed_pseudogene Interval_117637 chr4 125189895 125191598 + 0 NA Intergenic Intergenic -37851 ENSMUSG00000087010.1 ENSMUSG00000087010 ENSMUST00000130055 1700041M05Rik lincRNA Interval_141465 chr6 128431901 128432382 + 0 NA intron (ENSMUSG00000030357.10, intron 8 of 8) protein_coding-intron (ENSMUSG00000030357.10, intron 9 of 9) 5512 ENSMUSG00000030357.10 ENSMUSG00000030357 ENSMUST00000151796 Fkbp4 protein_coding Interval_152003 chr7 128132547 128133145 + 0 NA intron (ENSMUSG00000030789.9, intron 5 of 7) protein_coding-intron (ENSMUSG00000030789.9, intron 5 of 29) 6011 ENSMUSG00000108578.1 ENSMUSG00000108578 ENSMUST00000205866 Gm45700 processed_pseudogene Interval_145921 chr7 41786669 41786860 + 0 NA Intergenic Intergenic -13854 ENSMUSG00000092451.3 ENSMUSG00000092451 ENSMUST00000174814 Vmn2r-ps56 unprocessed_pseudogene Interval_5554 chr1 89778665 89778922 + 0 NA intron (ENSMUSG00000055013.16, intron 12 of 17) protein_coding-intron (ENSMUSG00000055013.16, intron 12 of 17) -10370 ENSMUSG00000055013.16 ENSMUSG00000055013 ENSMUST00000212924 Agap1 protein_coding Interval_51414 chr14 27358455 27358692 + 0 NA intron (ENSMUSG00000021895.10, intron 1 of 9) protein_coding-intron (ENSMUSG00000021895.10, intron 2 of 10) 22277 ENSMUSG00000093034.1 ENSMUSG00000093034 ENSMUST00000175293 Gm23633 miRNA Interval_146082 chr7 43727744 43728988 + 0 NA TTS (ENSMUSG00000054046.7) protein_coding-TTS (ENSMUSG00000054046.7) 12376 ENSMUSG00000108588.1 ENSMUSG00000108588 ENSMUST00000207018 Gm44814 TEC Interval_44690 chr13 47188451 47188863 + 0 NA intron (ENSMUSG00000038068.15, intron 1 of 7) protein_coding-intron (ENSMUSG00000038068.15, intron 1 of 7) -5168 ENSMUSG00000038068.15 ENSMUSG00000038068 ENSMUST00000110111 Rnf144b protein_coding Interval_139960 chr6 113066983 113067303 + 0 NA TTS (ENSMUSG00000086429.9) antisense-TTS (ENSMUSG00000086429.9) 6445 ENSMUSG00000077431.1 ENSMUSG00000077431 ENSMUST00000104243 Gm22591 snRNA Interval_136142 chr6 51458087 51460658 + 0 NA TTS (ENSMUSG00000029832.16) protein_coding-TTS (ENSMUSG00000029832.16) 10512 ENSMUSG00000004980.16 ENSMUSG00000004980 ENSMUST00000205204 Hnrnpa2b1 protein_coding Interval_112311 chr4 40278776 40279891 + 0 NA promoter-TSS (ENSMUSG00000071014.10) protein_coding-promoter-TSS (ENSMUSG00000071014.10) 76 ENSMUSG00000071014.10 ENSMUSG00000071014 ENSMUST00000108108 Ndufb6 protein_coding Interval_132416 chr5 144803044 144804122 + 0 NA intron (ENSMUSG00000045482.16, intron 24 of 70) protein_coding-intron (ENSMUSG00000045482.16, intron 24 of 69) 29158 ENSMUSG00000088685.1 ENSMUSG00000088685 ENSMUST00000158060 Gm23995 snoRNA Interval_151398 chr7 122088895 122089265 + 0 NA TTS (ENSMUSG00000030869.11) protein_coding-TTS (ENSMUSG00000030869.11) -7003 ENSMUSG00000108573.1 ENSMUSG00000108573 ENSMUST00000206292 Gm44986 TEC Interval_67012 chr16 40105554 40105793 + 0 NA intron (ENSMUSG00000061080.11, intron 1 of 1) protein_coding-intron (ENSMUSG00000061080.11, intron 1 of 8) -21795 ENSMUSG00000102456.1 ENSMUSG00000102456 ENSMUST00000193417 Gm37508 TEC Interval_158692 chr8 85311536 85311977 + 0 NA Intergenic Intergenic -3384 ENSMUSG00000088344.1 ENSMUSG00000088344 ENSMUST00000157719 Gm22336 snRNA Interval_161427 chr8 120407629 120409081 + 0 NA intron (ENSMUSG00000031822.20, intron 2 of 2) protein_coding-intron (ENSMUSG00000092329.1, intron 1 of 15) 35194 ENSMUSG00000080549.2 ENSMUSG00000080549 ENSMUST00000116899 Gm22715 miRNA Interval_91763 chr2 49363413 49365576 + 0 NA Intergenic Intergenic 34021 ENSMUSG00000077769.1 ENSMUSG00000077769 ENSMUST00000104581 Gm25215 snoRNA Interval_123892 chr5 36345100 36345343 + 0 NA intron (ENSMUSG00000029093.14, intron 1 of 4) protein_coding-intron (ENSMUSG00000029093.14, intron 1 of 26) 20697 ENSMUSG00000029093.14 ENSMUSG00000029093 ENSMUST00000141508 Sorcs2 protein_coding Interval_108055 chr3 121163210 121164343 + 0 NA intron (ENSMUSG00000028133.17, intron 1 of 4) protein_coding-intron (ENSMUSG00000028133.17, intron 1 of 3) -4880 ENSMUSG00000106329.1 ENSMUSG00000106329 ENSMUST00000199790 Gm10652 TEC Interval_111380 chr4 20041469 20042623 + 0 NA promoter-TSS (ENSMUSG00000073987.4) protein_coding-promoter-TSS (ENSMUSG00000073987.4) -6 ENSMUSG00000073987.4 ENSMUSG00000073987 ENSMUST00000098242 Ggh protein_coding Interval_149243 chr7 96610474 96610755 + 0 NA intron (ENSMUSG00000085792.2, intron 1 of 2) protein_coding-intron (ENSMUSG00000048078.16, intron 6 of 32) 18455 ENSMUSG00000085792.2 ENSMUSG00000085792 ENSMUST00000155217 Gm15414 antisense Interval_18431 chr10 85904131 85904327 + 0 NA TTS (ENSMUSG00000035529.10) protein_coding-TTS (ENSMUSG00000035529.10) 12757 ENSMUSG00000035529.10 ENSMUSG00000035529 ENSMUST00000218969 Prdm4 protein_coding Interval_27414 chr11 67479451 67479643 + 0 NA intron (ENSMUSG00000033066.16, intron 1 of 6) protein_coding-intron (ENSMUSG00000033066.16, intron 1 of 13) 97919 ENSMUSG00000087058.1 ENSMUSG00000087058 ENSMUST00000152963 Gm12301 antisense Interval_115760 chr4 103421187 103421935 + 0 NA intron (ENSMUSG00000086136.1, intron 3 of 3) lincRNA-intron (ENSMUSG00000086136.1, intron 1 of 2) 39061 ENSMUSG00000086136.1 ENSMUSG00000086136 ENSMUST00000150345 Gm12718 lincRNA Interval_138195 chr6 86127066 86127417 + 0 NA Intergenic Intergenic -19911 ENSMUSG00000107857.1 ENSMUSG00000107857 ENSMUST00000203685 Gm19596 unprocessed_pseudogene Interval_133296 chr5 151302986 151303311 + 0 NA intron (ENSMUSG00000107011.1, intron 1 of 5) protein_coding-intron (ENSMUSG00000107011.1, intron 1 of 5) 22025 ENSMUSG00000107154.1 ENSMUSG00000107154 ENSMUST00000201227 Gm7041 processed_pseudogene Interval_98609 chr2 153564255 153564585 + 0 NA Intergenic Intergenic 68311 ENSMUSG00000056941.17 ENSMUSG00000056941 ENSMUST00000109782 Commd7 protein_coding Interval_108519 chr3 127921286 127922648 + 0 NA intron (ENSMUSG00000104763.1, intron 1 of 4) lincRNA-intron (ENSMUSG00000104763.1, intron 1 of 4) 5795 ENSMUSG00000104763.1 ENSMUSG00000104763 ENSMUST00000198240 9830132P13Rik lincRNA Interval_172141 chrX 7936801 7937907 + 0 NA TTS (ENSMUSG00000031161.15) protein_coding-TTS (ENSMUSG00000031161.15) 2610 ENSMUSG00000031161.15 ENSMUSG00000031161 ENSMUST00000154244 Hdac6 protein_coding Interval_160695 chr8 111650515 111651704 + 0 NA intron (ENSMUSG00000055835.10, intron 1 of 4) protein_coding-intron (ENSMUSG00000055835.10, intron 1 of 3) 7629 ENSMUSG00000055835.10 ENSMUSG00000055835 ENSMUST00000211926 Zfp1 protein_coding Interval_134505 chr6 29204143 29205646 + 0 NA TTS (ENSMUSG00000003500.13) protein_coding-TTS (ENSMUSG00000003500.13) 11437 ENSMUSG00000003500.13 ENSMUSG00000003500 ENSMUST00000160749 Impdh1 protein_coding Interval_3055 chr1 52733893 52734443 + 0 NA Intergenic Intergenic -22551 ENSMUSG00000100230.1 ENSMUSG00000100230 ENSMUST00000188413 Gm28650 processed_pseudogene Interval_117525 chr4 124370916 124371690 + 0 NA Intergenic Intergenic -35622 ENSMUSG00000088933.1 ENSMUSG00000088933 ENSMUST00000158308 Gm22983 snRNA Interval_167750 chr9 72505939 72506300 + 0 NA Intergenic Intergenic 5215 ENSMUSG00000095555.2 ENSMUSG00000095555 ENSMUST00000179485 Gm28010 miRNA Interval_72710 chr17 31685399 31686158 + 0 NA Intergenic Intergenic -1404 ENSMUSG00000117987.1 ENSMUSG00000117987 ENSMUST00000237479 Gm50222 antisense Interval_65160 chr16 20279046 20279305 + 0 NA TTS (ENSMUSG00000033918.16) protein_coding-TTS (ENSMUSG00000033918.16) 23204 ENSMUSG00000033918.16 ENSMUSG00000033918 ENSMUST00000153275 Parl protein_coding Interval_113245 chr4 51868234 51869573 + 0 NA Intergenic Intergenic -23990 ENSMUSG00000081050.1 ENSMUSG00000081050 ENSMUST00000120231 Gm12461 processed_pseudogene Interval_52995 chr14 53044020 53045742 + 0 NA Intergenic Intergenic -2406 ENSMUSG00000076796.1 ENSMUSG00000076796 ENSMUST00000103606 Trav16d-dv11 TR_V_gene Interval_25631 chr11 50305392 50305630 + 0 NA intron (ENSMUSG00000020368.15, intron 7 of 14) protein_coding-intron (ENSMUSG00000020368.15, intron 7 of 14) -13707 ENSMUSG00000050567.16 ENSMUSG00000050567 ENSMUST00000059458 Maml1 protein_coding Interval_18721 chr10 89685515 89686804 + 0 NA promoter-TSS (ENSMUSG00000097383.1) bidirectional_promoter_lncRNA-promoter-TSS (ENSMUSG00000097383.1) 109 ENSMUSG00000069539.11 ENSMUSG00000069539 ENSMUST00000174429 Scyl2 protein_coding Interval_108741 chr3 130899841 130900356 + 0 NA intron (ENSMUSG00000106095.2, intron 1 of 2) lincRNA-intron (ENSMUSG00000106095.2, intron 1 of 2) -1567 ENSMUSG00000104579.1 ENSMUSG00000104579 ENSMUST00000199219 5830437K03Rik TEC Interval_138833 chr6 92286409 92287140 + 0 NA Intergenic Intergenic -5381 ENSMUSG00000108279.1 ENSMUSG00000108279 ENSMUST00000203008 Gm44024 processed_pseudogene Interval_21870 chr11 4860568 4863369 + 0 NA Intergenic Intergenic -12843 ENSMUSG00000009073.16 ENSMUSG00000009073 ENSMUST00000172305 Nf2 protein_coding Interval_154162 chr8 13158734 13159998 + 0 NA exon (ENSMUSG00000031447.7, exon 1 of 9) protein_coding-exon (ENSMUSG00000031447.7, exon 1 of 9) -13815 ENSMUSG00000031447.7 ENSMUSG00000031447 ENSMUST00000209709 Lamp1 protein_coding Interval_119910 chr4 140843584 140844477 + 0 NA intron (ENSMUSG00000025329.3, intron 1 of 15) protein_coding-intron (ENSMUSG00000025329.3, intron 1 of 15) 1748 ENSMUSG00000025329.3 ENSMUSG00000025329 ENSMUST00000026378 Padi1 protein_coding Interval_101790 chr3 9569635 9569851 + 0 NA intron (ENSMUSG00000040209.12, intron 1 of 8) protein_coding-intron (ENSMUSG00000040209.12, intron 1 of 8) -4444 ENSMUSG00000040209.12 ENSMUSG00000040209 ENSMUST00000192832 Zfp704 protein_coding Interval_23769 chr11 26067877 26068196 + 0 NA intron (ENSMUSG00000032985.15, intron 1 of 5) protein_coding-intron (ENSMUSG00000032985.15, intron 1 of 6) -134204 ENSMUSG00000099015.1 ENSMUSG00000099015 ENSMUST00000185114 Mir6372 miRNA Interval_117414 chr4 123583638 123583925 + 0 NA intron (ENSMUSG00000028649.21, intron 1 of 97) protein_coding-intron (ENSMUSG00000028649.21, intron 1 of 92) 29962 ENSMUSG00000028649.21 ENSMUSG00000028649 ENSMUST00000146000 Macf1 protein_coding Interval_161094 chr8 117420913 117421349 + 0 NA intron (ENSMUSG00000034390.16, intron 5 of 10) protein_coding-intron (ENSMUSG00000034390.16, intron 5 of 20) -2285 ENSMUSG00000034390.16 ENSMUSG00000034390 ENSMUST00000212884 Cmip protein_coding Interval_160367 chr8 108769561 108770758 + 0 NA intron (ENSMUSG00000038872.10, intron 1 of 9) protein_coding-intron (ENSMUSG00000038872.10, intron 1 of 9) 32566 ENSMUSG00000104292.1 ENSMUSG00000104292 ENSMUST00000191614 Gm38042 TEC Interval_121061 chr4 152520164 152520833 + 0 NA intron (ENSMUSG00000039577.17, intron 9 of 28) protein_coding-intron (ENSMUSG00000039577.17, intron 9 of 28) 42320 ENSMUSG00000039577.17 ENSMUSG00000039577 ENSMUST00000123635 Nphp4 protein_coding Interval_12820 chr10 5833717 5833937 + 0 NA intron (ENSMUSG00000019775.17, intron 4 of 4) protein_coding-intron (ENSMUSG00000019775.17, intron 6 of 6) -18072 ENSMUSG00000019774.8 ENSMUSG00000019774 ENSMUST00000145687 Mtrf1l protein_coding Interval_154043 chr8 12178200 12178479 + 0 NA Intergenic Intergenic -100480 ENSMUSG00000074473.1 ENSMUSG00000074473 ENSMUST00000098935 A230072I06Rik protein_coding Interval_163029 chr9 14662050 14663597 + 0 NA promoter-TSS (ENSMUSG00000111085.1) lincRNA-promoter-TSS (ENSMUSG00000111085.1) -199 ENSMUSG00000111085.1 ENSMUSG00000111085 ENSMUST00000214920 Gm7607 lincRNA Interval_114189 chr4 66585749 66586827 + 0 NA Intergenic Intergenic 42227 ENSMUSG00000065151.1 ENSMUSG00000065151 ENSMUST00000083217 Gm25480 snoRNA Interval_119189 chr4 136094539 136095522 + 0 NA Intergenic Intergenic -20058 ENSMUSG00000082877.1 ENSMUSG00000082877 ENSMUST00000121307 Gm13009 processed_pseudogene Interval_65888 chr16 30066679 30067216 + 0 NA exon (ENSMUSG00000022528.8, exon 4 of 4) protein_coding-exon (ENSMUSG00000022528.8, exon 4 of 4) 609 ENSMUSG00000022528.8 ENSMUSG00000022528 ENSMUST00000161839 Hes1 protein_coding Interval_1139 chr1 16061847 16062741 + 0 NA Intergenic Intergenic 8959 ENSMUSG00000100652.1 ENSMUSG00000100652 ENSMUST00000185778 Gm7634 processed_pseudogene Interval_114310 chr4 72174807 72175095 + 0 NA intron (ENSMUSG00000008305.18, intron 3 of 5) protein_coding-intron (ENSMUSG00000008305.18, intron 4 of 19) 6183 ENSMUSG00000086027.1 ENSMUSG00000086027 ENSMUST00000142137 Gm11250 antisense Interval_47485 chr13 85204954 85205132 + 0 NA intron (ENSMUSG00000021548.10, intron 5 of 7) protein_coding-intron (ENSMUSG00000021548.10, intron 5 of 8) -6279 ENSMUSG00000021548.10 ENSMUSG00000021548 ENSMUST00000166932 Ccnh protein_coding Interval_111100 chr4 12035108 12035344 + 0 NA intron (ENSMUSG00000085467.1, intron 2 of 2) antisense-intron (ENSMUSG00000085467.1, intron 2 of 2) 7721 ENSMUSG00000085467.1 ENSMUSG00000085467 ENSMUST00000130117 Gm11842 antisense Interval_89455 chr2 20758904 20759132 + 0 NA intron (ENSMUSG00000036617.17, intron 2 of 7) protein_coding-intron (ENSMUSG00000036617.17, intron 7 of 18) -45784 ENSMUSG00000086418.1 ENSMUSG00000086418 ENSMUST00000137186 Gm13362 antisense Interval_155236 chr8 28489488 28489820 + 0 NA Intergenic Intergenic -31022 ENSMUSG00000110322.1 ENSMUSG00000110322 ENSMUST00000211297 Gm8110 lincRNA Interval_95346 chr2 106815468 106816208 + 0 NA intron (ENSMUSG00000016386.15, intron 4 of 6) protein_coding-intron (ENSMUSG00000016386.15, intron 4 of 6) 6502 ENSMUSG00000105450.1 ENSMUSG00000105450 ENSMUST00000199948 Gm22813 scaRNA Interval_65338 chr16 21676862 21678393 + 0 NA exon (ENSMUSG00000043391.10, exon 3 of 3) protein_coding-intron (ENSMUSG00000043391.10, intron 1 of 1) 16953 ENSMUSG00000043391.10 ENSMUSG00000043391 ENSMUST00000232634 2510009E07Rik protein_coding Interval_144962 chr7 29134768 29135437 + 0 NA promoter-TSS (ENSMUSG00000030589.15) protein_coding-promoter-TSS (ENSMUSG00000030589.15) 251 ENSMUSG00000030589.15 ENSMUSG00000030589 ENSMUST00000160396 Rasgrp4 protein_coding Interval_173211 chrX 74249761 74250061 + 0 NA promoter-TSS (ENSMUSG00000031328.16) protein_coding-promoter-TSS (ENSMUSG00000031328.16) -4905 ENSMUSG00000001964.14 ENSMUSG00000001964 ENSMUST00000088313 Emd protein_coding Interval_99245 chr2 158352669 158353486 + 0 NA TTS (ENSMUSG00000085385.7) processed_transcript-TTS (ENSMUSG00000085385.7) 3477 ENSMUSG00000065362.1 ENSMUSG00000065362 ENSMUST00000083428 Gm24411 snoRNA Interval_121868 chr5 9004287 9004623 + 0 NA Intergenic Intergenic -4786 ENSMUSG00000084923.1 ENSMUSG00000084923 ENSMUST00000146928 Gm15611 lincRNA Interval_101557 chr3 5926889 5927089 + 0 NA Intergenic Intergenic 41394 ENSMUSG00000096130.1 ENSMUSG00000096130 ENSMUST00000179561 Gm25144 miRNA Interval_45245 chr13 53464796 53464991 + 0 NA Intergenic Intergenic 8181 ENSMUSG00000021469.9 ENSMUSG00000021469 ENSMUST00000188606 Msx2 protein_coding Interval_137967 chr6 83794450 83795816 + 0 NA promoter-TSS (ENSMUSG00000034744.13) protein_coding-promoter-TSS (ENSMUSG00000034744.13) -1109 ENSMUSG00000034744.13 ENSMUSG00000034744 ENSMUST00000205599 Nagk protein_coding Interval_7220 chr1 127970680 127971478 + 0 NA intron (ENSMUSG00000036086.16, intron 14 of 20) protein_coding-intron (ENSMUSG00000036086.16, intron 14 of 20) 1879 ENSMUSG00000036086.16 ENSMUSG00000036086 ENSMUST00000124876 Zranb3 protein_coding Interval_62936 chr15 98015896 98016226 + 0 NA Intergenic Intergenic -11570 ENSMUSG00000022483.17 ENSMUSG00000022483 ENSMUST00000230148 Col2a1 protein_coding Interval_60228 chr15 68428475 68429750 + 0 NA Intergenic Intergenic -65936 ENSMUSG00000093387.1 ENSMUSG00000093387 ENSMUST00000175699 Gm20732 lincRNA Interval_32020 chr11 104500008 104502466 + 0 NA Intergenic Intergenic 9624 ENSMUSG00000083782.1 ENSMUSG00000083782 ENSMUST00000120955 Gm11660 processed_pseudogene Interval_169754 chr9 100977930 100979598 + 0 NA Intergenic Intergenic 22995 ENSMUSG00000037286.15 ENSMUSG00000037286 ENSMUST00000191345 Stag1 protein_coding Interval_126323 chr5 86656454 86656774 + 0 NA Intergenic Intergenic 19748 ENSMUSG00000035861.6 ENSMUSG00000035861 ENSMUST00000038448 Tmprss11b protein_coding Interval_56355 chr14 118005651 118005935 + 0 NA Intergenic Intergenic 21742 ENSMUSG00000022129.4 ENSMUSG00000022129 ENSMUST00000227850 Dct protein_coding Interval_5080 chr1 84827917 84828170 + 0 NA intron (ENSMUSG00000026219.14, intron 1 of 40) protein_coding-intron (ENSMUSG00000026219.14, intron 1 of 40) -3360 ENSMUSG00000104503.1 ENSMUSG00000104503 ENSMUST00000192396 Gm37738 TEC Interval_119234 chr4 136357710 136357923 + 0 NA exon (ENSMUSG00000066037.14, exon 11 of 11) protein_coding-exon (ENSMUSG00000066037.14, exon 11 of 11) -8375 ENSMUSG00000098155.1 ENSMUSG00000098155 ENSMUST00000183225 Gm27022 lincRNA Interval_38175 chr12 76190402 76191302 + 0 NA Intergenic Intergenic -13593 ENSMUSG00000021055.14 ENSMUSG00000021055 ENSMUST00000076634 Esr2 protein_coding Interval_85473 chr19 27039959 27040427 + 0 NA Intergenic Intergenic 14212 ENSMUSG00000118313.1 ENSMUSG00000118313 ENSMUST00000236369 Gm50121 processed_pseudogene Interval_91895 chr2 51072574 51073840 + 0 NA Intergenic Intergenic 75903 ENSMUSG00000017144.8 ENSMUSG00000017144 ENSMUST00000140864 Rnd3 protein_coding Interval_24850 chr11 40394843 40395223 + 0 NA Intergenic Intergenic 28321 ENSMUSG00000082295.1 ENSMUSG00000082295 ENSMUST00000121775 Gm12133 processed_pseudogene Interval_112168 chr4 35121333 35122872 + 0 NA intron (ENSMUSG00000073910.10, intron 1 of 1) protein_coding-intron (ENSMUSG00000073910.10, intron 1 of 3) -29954 ENSMUSG00000042993.6 ENSMUSG00000042993 ENSMUST00000058595 Ifnk protein_coding Interval_52124 chr14 36889953 36890427 + 0 NA intron (ENSMUSG00000058690.14, intron 5 of 6) protein_coding-intron (ENSMUSG00000058690.14, intron 9 of 9) 18991 ENSMUSG00000058690.14 ENSMUSG00000058690 ENSMUST00000182635 Ccser2 protein_coding Interval_80699 chr18 46460897 46462068 + 0 NA Intergenic Intergenic 4308 ENSMUSG00000046487.6 ENSMUSG00000046487 ENSMUST00000180618 Mospd4 processed_pseudogene Interval_103341 chr3 39705532 39705760 + 0 NA Intergenic Intergenic 39358 ENSMUSG00000065945.1 ENSMUSG00000065945 ENSMUST00000084011 Gm23796 snRNA Interval_1898 chr1 34410004 34410324 + 0 NA Intergenic Intergenic 7822 ENSMUSG00000101462.2 ENSMUSG00000101462 ENSMUST00000188254 Gm3052 transcribed_processed_pseudogene Interval_58837 chr15 38484450 38487103 + 0 NA Intergenic Intergenic 4771 ENSMUSG00000099110.1 ENSMUSG00000099110 ENSMUST00000183910 Mir6951 miRNA Interval_134382 chr6 27937057 27937574 + 0 NA promoter-TSS (ENSMUSG00000076067.1) miRNA-promoter-TSS (ENSMUSG00000076067.1) -565 ENSMUSG00000076067.1 ENSMUSG00000076067 ENSMUST00000102113 Mir592 miRNA Interval_76544 chr17 80903953 80904179 + 0 NA intron (ENSMUSG00000112121.1, intron 1 of 5) lincRNA-intron (ENSMUSG00000112121.1, intron 1 of 4) 7273 ENSMUSG00000112121.1 ENSMUSG00000112121 ENSMUST00000220067 C230072F16Rik lincRNA Interval_23423 chr11 22539940 22541160 + 0 NA Intergenic Intergenic 28462 ENSMUSG00000049904.7 ENSMUSG00000049904 ENSMUST00000059319 Tmem17 protein_coding Interval_98576 chr2 153353494 153354770 + 0 NA intron (ENSMUSG00000042548.14, intron 2 of 11) protein_coding-intron (ENSMUSG00000042548.14, intron 2 of 12) -8059 ENSMUSG00000073236.4 ENSMUSG00000073236 ENSMUST00000139636 2500004C02Rik processed_transcript Interval_89890 chr2 26259356 26260259 + 0 NA intron (ENSMUSG00000048038.8, intron 15 of 26) protein_coding-intron (ENSMUSG00000048038.8, intron 14 of 25) -34436 ENSMUSG00000036327.18 ENSMUSG00000036327 ENSMUST00000036187 Qsox2 protein_coding Interval_20851 chr10 121506835 121507884 + 0 NA intron (ENSMUSG00000112527.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000112527.1, intron 1 of 2) 736 ENSMUSG00000112527.1 ENSMUSG00000112527 ENSMUST00000218852 Gm35696 lincRNA Interval_124546 chr5 50285214 50285855 + 0 NA intron (ENSMUSG00000105020.1, intron 2 of 4) unprocessed_pseudogene-intron (ENSMUSG00000105020.1, intron 2 of 4) 4952 ENSMUSG00000095857.1 ENSMUSG00000095857 ENSMUST00000179376 Gm22618 snRNA Interval_173606 chrX 100776615 100777563 + 0 NA promoter-TSS (ENSMUSG00000000881.12) protein_coding-promoter-TSS (ENSMUSG00000000881.12) -196 ENSMUSG00000000881.12 ENSMUSG00000000881 ENSMUST00000146772 Dlg3 protein_coding Interval_131715 chr5 139468160 139468416 + 0 NA Intergenic Intergenic -7761 ENSMUSG00000053553.11 ENSMUSG00000053553 ENSMUST00000197512 3110082I17Rik protein_coding Interval_108327 chr3 124039330 124039822 + 0 NA Intergenic Intergenic -54472 ENSMUSG00000081939.2 ENSMUSG00000081939 ENSMUST00000118055 Gm15399 processed_pseudogene Interval_81612 chr18 62093304 62093660 + 0 NA Intergenic Intergenic -49136 ENSMUSG00000118370.1 ENSMUSG00000118370 ENSMUST00000236502 Gm41750 lincRNA Interval_70911 chr17 15808974 15809187 + 0 NA intron (ENSMUSG00000048027.9, intron 2 of 2) protein_coding-intron (ENSMUSG00000048027.9, intron 2 of 2) 21805 ENSMUSG00000048027.9 ENSMUSG00000048027 ENSMUST00000231985 Rgmb protein_coding Interval_12431 chr1 193389866 193390058 + 0 NA Intergenic Intergenic -19737 ENSMUSG00000016179.11 ENSMUSG00000016179 ENSMUST00000165718 Camk1g protein_coding Interval_65419 chr16 22234025 22234761 + 0 NA Intergenic Intergenic -2528 ENSMUSG00000098043.1 ENSMUSG00000098043 ENSMUST00000183321 Gm26980 processed_pseudogene Interval_61493 chr15 81967494 81970095 + 0 NA TTS (ENSMUSG00000116157.1) unprocessed_pseudogene-TTS (ENSMUSG00000116157.1) 1806 ENSMUSG00000116157.1 ENSMUSG00000116157 ENSMUST00000230825 Cyp2d67-ps unprocessed_pseudogene Interval_53484 chr14 57789656 57789915 + 0 NA Intergenic Intergenic -8639 ENSMUSG00000092784.1 ENSMUSG00000092784 ENSMUST00000175043 Mir3077 miRNA Interval_92451 chr2 59788107 59789383 + 0 NA intron (ENSMUSG00000035168.16, intron 7 of 25) protein_coding-intron (ENSMUSG00000035168.16, intron 8 of 26) -17323 ENSMUSG00000035168.16 ENSMUSG00000035168 ENSMUST00000147650 Tanc1 protein_coding Interval_110619 chr4 4785285 4786506 + 0 NA intron (ENSMUSG00000066324.2, intron 1 of 4) protein_coding-intron (ENSMUSG00000066324.2, intron 1 of 4) 7460 ENSMUSG00000066324.2 ENSMUSG00000066324 ENSMUST00000084949 Impad1 protein_coding Interval_74080 chr17 46460414 46461328 + 0 NA exon (ENSMUSG00000015599.9, exon 13 of 13) protein_coding-exon (ENSMUSG00000015599.9, exon 13 of 13) -15636 ENSMUSG00000114244.1 ENSMUSG00000114244 ENSMUST00000224870 Gm47119 antisense Interval_147212 chr7 64595214 64595511 + 0 NA intron (ENSMUSG00000030519.14, intron 2 of 2) protein_coding-intron (ENSMUSG00000030519.14, intron 2 of 14) 65937 ENSMUSG00000108721.1 ENSMUSG00000108721 ENSMUST00000206978 Gm44721 TEC Interval_70211 chr17 6743124 6745220 + 0 NA intron (ENSMUSG00000052397.8, intron 7 of 12) protein_coding-intron (ENSMUSG00000052397.8, intron 7 of 12) -1351 ENSMUSG00000052397.8 ENSMUSG00000052397 ENSMUST00000131131 Ezr protein_coding Interval_108938 chr3 133500793 133501549 + 0 NA intron (ENSMUSG00000040943.12, intron 2 of 2) protein_coding-intron (ENSMUSG00000040943.12, intron 2 of 10) -20489 ENSMUSG00000040943.12 ENSMUSG00000040943 ENSMUST00000195913 Tet2 protein_coding Interval_120298 chr4 145271552 145273608 + 0 NA intron (ENSMUSG00000028602.12, intron 12 of 12) protein_coding-intron (ENSMUSG00000028602.12, intron 12 of 12) -25710 ENSMUSG00000028599.10 ENSMUSG00000028599 ENSMUST00000143055 Tnfrsf1b protein_coding Interval_90847 chr2 32939111 32941627 + 0 NA intron (ENSMUSG00000026792.16, intron 1 of 7) protein_coding-intron (ENSMUSG00000026792.16, intron 15 of 24) -1570 ENSMUSG00000026792.16 ENSMUSG00000026792 ENSMUST00000138015 Lrsam1 protein_coding Interval_156053 chr8 43251393 43252091 + 0 NA Intergenic Intergenic 51774 ENSMUSG00000109974.1 ENSMUSG00000109974 ENSMUST00000209342 Gm2221 processed_pseudogene Interval_103121 chr3 35688951 35689201 + 0 NA Intergenic Intergenic -46297 ENSMUSG00000064834.1 ENSMUSG00000064834 ENSMUST00000082900 Gm25696 snRNA Interval_59134 chr15 44618723 44619907 + 0 NA promoter-TSS (ENSMUSG00000022339.9) protein_coding-promoter-TSS (ENSMUSG00000022339.9) -114 ENSMUSG00000022339.9 ENSMUSG00000022339 ENSMUST00000022964 Ebag9 protein_coding Interval_174246 chrX 140726541 140727059 + 0 NA intron (ENSMUSG00000000266.11, intron 2 of 8) protein_coding-intron (ENSMUSG00000000266.11, intron 3 of 9) -22127 ENSMUSG00000000266.11 ENSMUSG00000000266 ENSMUST00000140144 Mid2 protein_coding Interval_106303 chr3 95255075 95255449 + 0 NA exon (ENSMUSG00000015711.8, exon 8 of 8) protein_coding-exon (ENSMUSG00000015711.8, exon 8 of 8) -6683 ENSMUSG00000028115.16 ENSMUSG00000028115 ENSMUST00000176070 Bnipl protein_coding Interval_143452 chr7 6900615 6901109 + 0 NA exon (ENSMUSG00000109094.1, exon 1 of 1) TEC-exon (ENSMUSG00000109094.1, exon 1 of 1) 510 ENSMUSG00000109094.1 ENSMUSG00000109094 ENSMUST00000207399 Gm44587 TEC Interval_154286 chr8 14038197 14038901 + 0 NA intron (ENSMUSG00000051978.9, intron 3 of 5) protein_coding-intron (ENSMUSG00000051978.9, intron 3 of 5) 29269 ENSMUSG00000109982.1 ENSMUSG00000109982 ENSMUST00000210109 Gm45520 TEC Interval_144947 chr7 29052582 29053281 + 0 NA intron (ENSMUSG00000030592.18, intron 74 of 108) protein_coding-intron (ENSMUSG00000030592.18, intron 73 of 105) 7303 ENSMUSG00000105563.1 ENSMUSG00000105563 ENSMUST00000200205 Gm44408 miRNA Interval_45071 chr13 51853262 51854089 + 0 NA Intergenic Intergenic 6931 ENSMUSG00000021453.2 ENSMUSG00000021453 ENSMUST00000132480 Gadd45g protein_coding Interval_32290 chr11 106709248 106710047 + 0 NA intron (ENSMUSG00000020717.19, intron 2 of 14) protein_coding-intron (ENSMUSG00000020717.19, intron 3 of 15) -41618 ENSMUSG00000040528.15 ENSMUSG00000040528 ENSMUST00000182479 Milr1 protein_coding Interval_62050 chr15 86107736 86108492 + 0 NA intron (ENSMUSG00000035900.18, intron 3 of 18) protein_coding-intron (ENSMUSG00000035900.18, intron 3 of 18) -18054 ENSMUSG00000089680.1 ENSMUSG00000089680 ENSMUST00000159271 Gm15722 antisense Interval_130872 chr5 132875539 132876343 + 0 NA Intergenic Intergenic 74263 ENSMUSG00000088123.1 ENSMUSG00000088123 ENSMUST00000157498 Gm25722 misc_RNA Interval_105903 chr3 89988411 89988618 + 0 NA Intergenic Intergenic 9848 ENSMUSG00000027944.13 ENSMUSG00000027944 ENSMUST00000199740 Hax1 protein_coding Interval_133237 chr5 150772543 150773503 + 0 NA intron (ENSMUSG00000034021.15, intron 19 of 34) protein_coding-intron (ENSMUSG00000034021.15, intron 19 of 34) 20930 ENSMUSG00000107048.1 ENSMUSG00000107048 ENSMUST00000200678 Gm43807 sense_intronic Interval_60594 chr15 75574994 75576793 + 0 NA Intergenic Intergenic -8847 ENSMUSG00000022577.17 ENSMUSG00000022577 ENSMUST00000228961 Ly6h protein_coding Interval_32635 chr11 109330971 109332058 + 0 NA Intergenic Intergenic -15325 ENSMUSG00000099630.1 ENSMUSG00000099630 ENSMUST00000190043 1700096J18Rik lincRNA Interval_101197 chr2 179399104 179399317 + 0 NA Intergenic Intergenic -15726 ENSMUSG00000039138.1 ENSMUSG00000039138 ENSMUST00000041998 4930591A17Rik lincRNA Interval_27237 chr11 64600441 64600782 + 0 NA Intergenic Intergenic -9971 ENSMUSG00000080430.1 ENSMUSG00000080430 ENSMUST00000116780 Gm24275 miRNA Interval_106707 chr3 99247754 99249082 + 0 NA intron (ENSMUSG00000027868.11, intron 1 of 2) protein_coding-intron (ENSMUSG00000027868.11, intron 1 of 2) 8037 ENSMUSG00000027868.11 ENSMUSG00000027868 ENSMUST00000150756 Tbx15 protein_coding Interval_7182 chr1 127522324 127523790 + 0 NA intron (ENSMUSG00000026347.13, intron 4 of 7) protein_coding-intron (ENSMUSG00000026347.13, intron 4 of 8) 116281 ENSMUSG00000103390.1 ENSMUSG00000103390 ENSMUST00000195573 Gm38301 TEC Interval_20743 chr10 120694470 120695261 + 0 NA intron (ENSMUSG00000112716.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000112716.1, intron 1 of 2) 4338 ENSMUSG00000112716.1 ENSMUSG00000112716 ENSMUST00000219022 4930471E19Rik lincRNA Interval_103580 chr3 50304060 50304354 + 0 NA intron (ENSMUSG00000027737.10, intron 11 of 11) protein_coding-intron (ENSMUSG00000027737.10, intron 11 of 11) 49352 ENSMUSG00000102167.1 ENSMUSG00000102167 ENSMUST00000193451 Gm2345 processed_pseudogene Interval_45236 chr13 53388321 53388936 + 0 NA Intergenic Intergenic -5029 ENSMUSG00000107008.3 ENSMUSG00000107008 ENSMUST00000202739 Gm2762 lincRNA Interval_153194 chr7 142293748 142294389 + 0 NA Intergenic Intergenic 3050 ENSMUSG00000066100.7 ENSMUSG00000066100 ENSMUST00000188274 Krtap5-1 protein_coding Interval_5045 chr1 84636863 84637726 + 0 NA intron (ENSMUSG00000036766.12, intron 1 of 4) protein_coding-intron (ENSMUSG00000036766.12, intron 1 of 12) -13453 ENSMUSG00000036766.12 ENSMUSG00000036766 ENSMUST00000191546 Dner protein_coding Interval_107483 chr3 108017354 108018390 + 0 NA promoter-TSS (ENSMUSG00000058135.12) protein_coding-promoter-TSS (ENSMUSG00000058135.12) -2013 ENSMUSG00000083627.1 ENSMUSG00000083627 ENSMUST00000120197 Gm12502 processed_pseudogene Interval_86049 chr19 36001197 36001806 + 0 NA intron (ENSMUSG00000024798.15, intron 1 of 3) protein_coding-intron (ENSMUSG00000024798.15, intron 1 of 3) 56006 ENSMUSG00000024798.15 ENSMUSG00000024798 ENSMUST00000099505 Htr7 protein_coding Interval_67527 chr16 50334025 50334523 + 0 NA intron (ENSMUSG00000022641.15, intron 2 of 16) protein_coding-intron (ENSMUSG00000022641.15, intron 2 of 15) 98035 ENSMUSG00000022641.15 ENSMUSG00000022641 ENSMUST00000130210 Bbx protein_coding Interval_163055 chr9 14858532 14860721 + 0 NA promoter-TSS (ENSMUSG00000031932.14) protein_coding-promoter-TSS (ENSMUSG00000031932.14) -5714 ENSMUSG00000031932.14 ENSMUSG00000031932 ENSMUST00000133278 Gpr83 protein_coding Interval_87325 chr19 47696036 47697367 + 0 NA promoter-TSS (ENSMUSG00000117702.1) lincRNA-promoter-TSS (ENSMUSG00000117702.1) -168 ENSMUSG00000117702.1 ENSMUSG00000117702 ENSMUST00000237057 Gm50281 lincRNA Interval_54941 chr14 76370043 76370417 + 0 NA Intergenic Intergenic -48598 ENSMUSG00000022010.19 ENSMUSG00000022010 ENSMUST00000133224 Tsc22d1 protein_coding Interval_156667 chr8 56616196 56616904 + 0 NA Intergenic Intergenic 28630 ENSMUSG00000038206.13 ENSMUSG00000038206 ENSMUST00000211294 Fbxo8 protein_coding Interval_165592 chr9 50000590 50000781 + 0 NA Intergenic Intergenic 45807 ENSMUSG00000111682.1 ENSMUSG00000111682 ENSMUST00000215094 Gm47543 lincRNA Interval_1569 chr1 26637452 26637687 + 0 NA Intergenic Intergenic 49891 ENSMUSG00000073722.3 ENSMUSG00000073722 ENSMUST00000097801 4931408C20Rik protein_coding Interval_7117 chr1 126210025 126210351 + 0 NA intron (ENSMUSG00000049690.15, intron 5 of 10) protein_coding-intron (ENSMUSG00000049690.15, intron 4 of 12) 114486 ENSMUSG00000103824.1 ENSMUSG00000103824 ENSMUST00000192213 Gm38177 TEC Interval_136553 chr6 55504279 55505509 + 0 NA Intergenic Intergenic -28612 ENSMUSG00000104746.1 ENSMUSG00000104746 ENSMUST00000196358 Gm44352 miRNA Interval_171814 chr9 121419612 121419803 + 0 NA intron (ENSMUSG00000032536.12, intron 1 of 12) protein_coding-intron (ENSMUSG00000032536.12, intron 2 of 15) 73151 ENSMUSG00000110738.1 ENSMUSG00000110738 ENSMUST00000214815 Gm47092 TEC Interval_8243 chr1 136689317 136691056 + 0 NA intron (ENSMUSG00000097113.7, intron 2 of 2) lincRNA-intron (ENSMUSG00000097113.7, intron 2 of 2) -6025 ENSMUSG00000097448.1 ENSMUSG00000097448 ENSMUST00000181274 Platr22 lincRNA Interval_168270 chr9 78349906 78350879 + 0 NA intron (ENSMUSG00000057933.10, intron 1 of 6) protein_coding-intron (ENSMUSG00000057933.10, intron 1 of 6) -11640 ENSMUSG00000057933.10 ENSMUSG00000057933 ENSMUST00000140498 Gsta2 protein_coding Interval_128174 chr5 111508993 111511061 + 0 NA Intergenic Intergenic -71534 ENSMUSG00000052848.7 ENSMUSG00000052848 ENSMUST00000198458 C130026L21Rik lincRNA Interval_64463 chr16 11627826 11628099 + 0 NA intron (ENSMUSG00000071669.14, intron 15 of 20) protein_coding-intron (ENSMUSG00000071669.14, intron 8 of 13) 63895 ENSMUSG00000085732.1 ENSMUSG00000085732 ENSMUST00000154314 Gm4279 antisense Interval_89692 chr2 24664081 24664872 + 0 NA intron (ENSMUSG00000004113.18, intron 20 of 46) protein_coding-intron (ENSMUSG00000004113.18, intron 20 of 46) -10225 ENSMUSG00000083973.1 ENSMUSG00000083973 ENSMUST00000121558 Gm13459 processed_pseudogene Interval_140119 chr6 114407648 114408654 + 0 NA intron (ENSMUSG00000053004.9, intron 1 of 1) protein_coding-intron (ENSMUSG00000053004.9, intron 1 of 2) 4485 ENSMUSG00000053004.9 ENSMUSG00000053004 ENSMUST00000160780 Hrh1 protein_coding Interval_170711 chr9 110230483 110231292 + 0 NA intron (ENSMUSG00000032481.17, intron 26 of 28) protein_coding-intron (ENSMUSG00000032481.17, intron 26 of 27) -5507 ENSMUSG00000032481.17 ENSMUSG00000032481 ENSMUST00000200426 Smarcc1 protein_coding Interval_105298 chr3 84664664 84666458 + 0 NA promoter-TSS (ENSMUSG00000056498.13) protein_coding-promoter-TSS (ENSMUSG00000056498.13) -649 ENSMUSG00000056498.13 ENSMUSG00000056498 ENSMUST00000128344 Tmem154 protein_coding Interval_102266 chr3 20126492 20128065 + 0 NA intron (ENSMUSG00000019528.18, intron 5 of 7) protein_coding-intron (ENSMUSG00000019528.18, intron 5 of 6) 18802 ENSMUSG00000002428.12 ENSMUSG00000002428 ENSMUST00000155635 Hltf protein_coding Interval_78697 chr18 17845805 17846020 + 0 NA Intergenic Intergenic 17093 ENSMUSG00000117439.1 ENSMUSG00000117439 ENSMUST00000234539 Gm50083 processed_pseudogene Interval_45668 chr13 56694013 56694392 + 0 NA Intergenic Intergenic -5728 ENSMUSG00000098962.1 ENSMUSG00000098962 ENSMUST00000184060 Gm27698 misc_RNA Interval_101735 chr3 9276016 9276911 + 0 NA intron (ENSMUSG00000069114.8, intron 2 of 5) protein_coding-intron (ENSMUSG00000069114.8, intron 2 of 5) 25861 ENSMUSG00000069114.8 ENSMUSG00000069114 ENSMUST00000155203 Zbtb10 protein_coding Interval_83282 chr18 83422439 83423680 + 0 NA exon (ENSMUSG00000118060.1, exon 1 of 2) lincRNA-exon (ENSMUSG00000118060.1, exon 1 of 2) 420 ENSMUSG00000118060.1 ENSMUSG00000118060 ENSMUST00000236210 4933401L05Rik lincRNA Interval_36803 chr12 54178041 54178784 + 0 NA TTS (ENSMUSG00000035105.5) protein_coding-TTS (ENSMUSG00000035105.5) 25448 ENSMUSG00000035105.5 ENSMUSG00000035105 ENSMUST00000039516 Egln3 protein_coding Interval_110803 chr4 8542721 8543245 + 0 NA intron (ENSMUSG00000047187.9, intron 1 of 7) protein_coding-intron (ENSMUSG00000047187.9, intron 1 of 7) 7339 ENSMUSG00000047187.9 ENSMUSG00000047187 ENSMUST00000060232 Rab2a protein_coding Interval_166692 chr9 61972795 61973015 + 0 NA intron (ENSMUSG00000032278.11, intron 2 of 6) protein_coding-intron (ENSMUSG00000032278.11, intron 3 of 7) -47689 ENSMUSG00000088743.1 ENSMUSG00000088743 ENSMUST00000158118 Gm23221 misc_RNA Interval_128651 chr5 114513681 114514610 + 0 NA Intergenic Intergenic -37144 ENSMUSG00000086302.1 ENSMUSG00000086302 ENSMUST00000156209 Gm13790 lincRNA Interval_138716 chr6 91369863 91370472 + 0 NA intron (ENSMUSG00000030093.7, intron 3 of 3) protein_coding-intron (ENSMUSG00000030093.7, intron 3 of 3) -5070 ENSMUSG00000030093.7 ENSMUSG00000030093 ENSMUST00000132936 Wnt7a protein_coding Interval_75137 chr17 63845534 63846058 + 0 NA Intergenic Intergenic -17266 ENSMUSG00000000127.15 ENSMUSG00000000127 ENSMUST00000038080 Fer protein_coding Interval_22543 chr11 11650406 11651140 + 0 NA intron (ENSMUSG00000085652.1, intron 3 of 3) processed_transcript-intron (ENSMUSG00000085652.1, intron 3 of 3) -22938 ENSMUSG00000062511.6 ENSMUSG00000062511 ENSMUST00000149910 4930512M02Rik protein_coding Interval_130053 chr5 123947555 123948026 + 0 NA intron (ENSMUSG00000061882.12, intron 1 of 3) protein_coding-intron (ENSMUSG00000061882.12, intron 6 of 12) -14838 ENSMUSG00000061882.12 ENSMUSG00000061882 ENSMUST00000197673 Ccdc62 protein_coding Interval_37692 chr12 71128766 71129424 + 0 NA intron (ENSMUSG00000021079.16, intron 1 of 2) protein_coding-intron (ENSMUSG00000021079.16, intron 1 of 3) 7540 ENSMUSG00000021079.16 ENSMUSG00000021079 ENSMUST00000223544 Timm9 protein_coding Interval_158977 chr8 88373002 88373195 + 0 NA Intergenic Intergenic -18023 ENSMUSG00000110280.1 ENSMUSG00000110280 ENSMUST00000211701 Gm45497 processed_pseudogene Interval_5865 chr1 92774679 92775603 + 0 NA Intergenic Intergenic -14661 ENSMUSG00000099665.1 ENSMUSG00000099665 ENSMUST00000187845 Gm29482 lincRNA Interval_122671 chr5 24576869 24578041 + 0 NA promoter-TSS (ENSMUSG00000028953.10) protein_coding-promoter-TSS (ENSMUSG00000028953.10) 12 ENSMUSG00000028953.10 ENSMUSG00000028953 ENSMUST00000030795 Abcf2 protein_coding Interval_159292 chr8 92855041 92856146 + 0 NA exon (ENSMUSG00000033192.5, exon 1 of 14) protein_coding-exon (ENSMUSG00000033192.5, exon 1 of 14) 198 ENSMUSG00000033192.5 ENSMUSG00000033192 ENSMUST00000151106 Lpcat2 protein_coding Interval_107664 chr3 109735820 109736305 + 0 NA Intergenic Intergenic 88538 ENSMUSG00000033721.16 ENSMUSG00000033721 ENSMUST00000148866 Vav3 protein_coding Interval_34859 chr12 12774940 12775357 + 0 NA Intergenic Intergenic -12837 ENSMUSG00000091430.1 ENSMUSG00000091430 ENSMUST00000171380 Platr19 lincRNA Interval_159427 chr8 94566554 94567264 + 0 NA intron (ENSMUSG00000034361.10, intron 14 of 15) protein_coding-intron (ENSMUSG00000034361.10, intron 14 of 15) 11395 ENSMUSG00000034361.10 ENSMUSG00000034361 ENSMUST00000156377 Cpne2 protein_coding Interval_1961 chr1 35017473 35017882 + 0 NA Intergenic Intergenic 32021 ENSMUSG00000103997.1 ENSMUSG00000103997 ENSMUST00000192315 Gm38027 processed_pseudogene Interval_109971 chr3 152241269 152241578 + 0 NA intron (ENSMUSG00000039103.12, intron 3 of 3) protein_coding-intron (ENSMUSG00000039103.12, intron 10 of 12) 11380 ENSMUSG00000104621.1 ENSMUSG00000104621 ENSMUST00000197507 Gm43185 TEC Interval_60178 chr15 67020900 67021844 + 0 NA Intergenic Intergenic -18686 ENSMUSG00000116289.1 ENSMUSG00000116289 ENSMUST00000230911 Gm31342 lincRNA Interval_51586 chr14 30528609 30532105 + 0 NA Intergenic Intergenic 6650 ENSMUSG00000021962.9 ENSMUSG00000021962 ENSMUST00000225934 Dcp1a protein_coding Interval_15586 chr10 51956628 51957819 + 0 NA intron (ENSMUSG00000112659.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000112659.1, intron 1 of 2) 13068 ENSMUSG00000112659.1 ENSMUSG00000112659 ENSMUST00000218796 Gm40646 lincRNA Interval_3697 chr1 61139409 61139615 + 0 NA Intergenic Intergenic -15508 ENSMUSG00000082661.1 ENSMUSG00000082661 ENSMUST00000118999 Gm11590 processed_pseudogene Interval_45946 chr13 59546308 59547363 + 0 NA intron (ENSMUSG00000021557.15, intron 1 of 4) protein_coding-intron (ENSMUSG00000021557.15, intron 1 of 25) -10731 ENSMUSG00000114526.1 ENSMUSG00000114526 ENSMUST00000225984 A930015P04Rik TEC Interval_62376 chr15 91304215 91305091 + 0 NA intron (ENSMUSG00000036298.10, intron 7 of 9) protein_coding-intron (ENSMUSG00000036298.10, intron 7 of 9) 105159 ENSMUSG00000078932.8 ENSMUSG00000078932 ENSMUST00000109284 CN725425 protein_coding Interval_23737 chr11 25645300 25646052 + 0 NA intron (ENSMUSG00000032985.15, intron 2 of 2) protein_coding-intron (ENSMUSG00000032985.15, intron 6 of 6) -39464 ENSMUSG00000064761.1 ENSMUSG00000064761 ENSMUST00000082827 Gm23514 snoRNA Interval_5110 chr1 85735609 85737104 + 0 NA intron (ENSMUSG00000052760.16, intron 1 of 2) protein_coding-intron (ENSMUSG00000052760.16, intron 1 of 5) 225 ENSMUSG00000052760.16 ENSMUSG00000052760 ENSMUST00000159325 A630001G21Rik protein_coding Interval_95769 chr2 116010168 116010470 + 0 NA intron (ENSMUSG00000027210.20, intron 2 of 3) protein_coding-intron (ENSMUSG00000027210.20, intron 7 of 11) 57125 ENSMUSG00000086328.1 ENSMUSG00000086328 ENSMUST00000140185 2700033N17Rik lincRNA Interval_126255 chr5 84408436 84408734 + 0 NA intron (ENSMUSG00000029245.16, intron 1 of 3) protein_coding-intron (ENSMUSG00000029245.16, intron 1 of 15) -20220 ENSMUSG00000106598.1 ENSMUSG00000106598 ENSMUST00000199389 Gm43532 lincRNA Interval_75259 chr17 65515311 65515550 + 0 NA intron (ENSMUSG00000045036.15, intron 2 of 14) protein_coding-intron (ENSMUSG00000045036.15, intron 3 of 15) -1462 ENSMUSG00000117140.1 ENSMUSG00000117140 ENSMUST00000233254 Gm18138 processed_pseudogene Interval_148547 chr7 82335129 82336666 + 0 NA exon (ENSMUSG00000070469.12, exon 1 of 3) protein_coding-exon (ENSMUSG00000070469.12, exon 1 of 3) -6371 ENSMUSG00000109479.1 ENSMUSG00000109479 ENSMUST00000208587 Gm44919 TEC Interval_764 chr1 10800157 10800625 + 0 NA Intergenic Intergenic -4890 ENSMUSG00000100212.1 ENSMUSG00000100212 ENSMUST00000189483 Gm5522 processed_pseudogene Interval_97964 chr2 146218247 146218675 + 0 NA Intergenic Intergenic -3460 ENSMUSG00000068154.5 ENSMUSG00000068154 ENSMUST00000089257 Insm1 protein_coding Interval_102077 chr3 16551328 16551536 + 0 NA Intergenic Intergenic 271880 ENSMUSG00000088644.1 ENSMUSG00000088644 ENSMUST00000158019 Gm26485 snRNA Interval_27684 chr11 69463961 69464727 + 0 NA TTS (ENSMUSG00000005237.14) protein_coding-TTS (ENSMUSG00000005237.14) 15796 ENSMUSG00000086591.1 ENSMUSG00000086591 ENSMUST00000124108 Dnah2os antisense Interval_152721 chr7 136845510 136846710 + 0 NA Intergenic Intergenic 35201 ENSMUSG00000110126.1 ENSMUSG00000110126 ENSMUST00000211473 Gm9347 processed_pseudogene Interval_3117 chr1 53622338 53622801 + 0 NA intron (ENSMUSG00000096141.2, intron 17 of 65) protein_coding-intron (ENSMUSG00000096141.2, intron 17 of 65) 84215 ENSMUSG00000096141.2 ENSMUSG00000096141 ENSMUST00000189677 Dnah7a protein_coding Interval_114116 chr4 63558019 63559529 + 0 NA promoter-TSS (ENSMUSG00000045917.17) protein_coding-promoter-TSS (ENSMUSG00000045917.17) -1453 ENSMUSG00000045917.17 ENSMUSG00000045917 ENSMUST00000080336 Tmem268 protein_coding Interval_14388 chr10 32425287 32425656 + 0 NA intron (ENSMUSG00000069670.8, intron 1 of 3) protein_coding-intron (ENSMUSG00000069670.8, intron 1 of 6) -55179 ENSMUSG00000112511.1 ENSMUSG00000112511 ENSMUST00000219736 Gm18704 unprocessed_pseudogene Interval_113805 chr4 58942955 58944243 + 0 NA promoter-TSS (ENSMUSG00000038630.8) protein_coding-promoter-TSS (ENSMUSG00000038630.8) -29 ENSMUSG00000038630.8 ENSMUSG00000038630 ENSMUST00000107554 Zkscan16 protein_coding Interval_162530 chr9 3965451 3965806 + 0 NA Intergenic Intergenic -248294 ENSMUSG00000110691.1 ENSMUSG00000110691 ENSMUST00000211927 Gm5363 processed_pseudogene Interval_28808 chr11 78453637 78455866 + 0 NA Intergenic Intergenic 10644 ENSMUSG00000086380.1 ENSMUSG00000086380 ENSMUST00000135030 Gm11195 lincRNA Interval_120433 chr4 148590789 148592077 + 0 NA promoter-TSS (ENSMUSG00000006442.10) protein_coding-promoter-TSS (ENSMUSG00000006442.10) -485 ENSMUSG00000006442.10 ENSMUSG00000006442 ENSMUST00000140129 Srm protein_coding Interval_174807 chrX 167157430 167158652 + 0 NA Intergenic Intergenic -6056 ENSMUSG00000087340.1 ENSMUSG00000087340 ENSMUST00000142044 Gm15228 lincRNA Interval_46555 chr13 67107807 67109189 + 0 NA promoter-TSS (ENSMUSG00000100235.8) protein_coding-promoter-TSS (ENSMUSG00000100235.8) 96 ENSMUSG00000100235.8 ENSMUSG00000100235 ENSMUST00000187652 Gm28557 protein_coding Interval_27111 chr11 62976323 62976595 + 0 NA intron (ENSMUSG00000042200.3, intron 1 of 1) protein_coding-intron (ENSMUSG00000042200.3, intron 1 of 1) 25266 ENSMUSG00000042200.3 ENSMUSG00000042200 ENSMUST00000035854 Cdrt4 protein_coding Interval_151431 chr7 122381825 122382085 + 0 NA intron (ENSMUSG00000052889.11, intron 2 of 17) protein_coding-intron (ENSMUSG00000052889.11, intron 2 of 16) 19955 ENSMUSG00000108522.1 ENSMUSG00000108522 ENSMUST00000206841 Gm44664 TEC Interval_167493 chr9 70012078 70013321 + 0 NA promoter-TSS (ENSMUSG00000033543.17) protein_coding-promoter-TSS (ENSMUSG00000033543.17) -6349 ENSMUSG00000033543.17 ENSMUSG00000033543 ENSMUST00000148889 Gtf2a2 protein_coding Interval_87943 chr19 57272872 57274966 + 0 NA promoter-TSS (ENSMUSG00000117684.1) antisense-promoter-TSS (ENSMUSG00000117684.1) -41 ENSMUSG00000117684.1 ENSMUSG00000117684 ENSMUST00000237596 4930449E18Rik antisense Interval_152223 chr7 130744499 130744883 + 0 NA intron (ENSMUSG00000030852.18, intron 11 of 17) protein_coding-intron (ENSMUSG00000030852.18, intron 11 of 17) -22262 ENSMUSG00000109104.1 ENSMUSG00000109104 ENSMUST00000208365 Gm6108 processed_pseudogene Interval_43526 chr13 32709108 32709406 + 0 NA intron (ENSMUSG00000044951.17, intron 13 of 14) protein_coding-intron (ENSMUSG00000044951.17, intron 10 of 11) -48945 ENSMUSG00000098788.1 ENSMUSG00000098788 ENSMUST00000183530 Gm27342 snRNA Interval_90419 chr2 30345214 30345560 + 0 NA TTS (ENSMUSG00000026860.16) protein_coding-TTS (ENSMUSG00000026860.16) 13902 ENSMUSG00000026860.16 ENSMUSG00000026860 ENSMUST00000139963 Sh3glb2 protein_coding Interval_147248 chr7 65059610 65059811 + 0 NA intron (ENSMUSG00000030518.17, intron 1 of 3) protein_coding-intron (ENSMUSG00000030518.17, intron 1 of 9) -103134 ENSMUSG00000093212.1 ENSMUSG00000093212 ENSMUST00000175471 Gm25249 miRNA Interval_9624 chr1 160386960 160388351 + 0 NA intron (ENSMUSG00000026721.16, intron 2 of 6) protein_coding-intron (ENSMUSG00000026721.16, intron 18 of 20) 54249 ENSMUSG00000026721.16 ENSMUSG00000026721 ENSMUST00000193810 Rabgap1l protein_coding Interval_155021 chr8 25751827 25752173 + 0 NA TTS (ENSMUSG00000061313.8) protein_coding-TTS (ENSMUSG00000061313.8) -2150 ENSMUSG00000061313.8 ENSMUSG00000061313 ENSMUST00000209419 Ddhd2 protein_coding Interval_51759 chr14 32027953 32028717 + 0 NA promoter-TSS (ENSMUSG00000021903.11) protein_coding-promoter-TSS (ENSMUSG00000021903.11) -1075 ENSMUSG00000021903.11 ENSMUSG00000021903 ENSMUST00000164208 Galnt15 protein_coding Interval_4018 chr1 66606704 66607085 + 0 NA intron (ENSMUSG00000055567.18, intron 27 of 64) protein_coding-intron (ENSMUSG00000055567.18, intron 27 of 64) 85462 ENSMUSG00000103375.1 ENSMUSG00000103375 ENSMUST00000192513 Gm37181 TEC Interval_23943 chr11 28655085 28655688 + 0 NA Intergenic Intergenic -26178 ENSMUSG00000084966.1 ENSMUSG00000084966 ENSMUST00000146554 2810471M01Rik lincRNA Interval_67503 chr16 49974945 49975385 + 0 NA Intergenic Intergenic 119520 ENSMUSG00000055447.19 ENSMUSG00000055447 ENSMUST00000229104 Cd47 protein_coding Interval_149568 chr7 99644680 99645306 + 0 NA Intergenic Intergenic 8825 ENSMUSG00000065698.1 ENSMUSG00000065698 ENSMUST00000083764 Gm25409 snoRNA Interval_980 chr1 13621521 13622461 + 0 NA Intergenic Intergenic 16420 ENSMUSG00000025937.6 ENSMUSG00000025937 ENSMUST00000156222 Lactb2 protein_coding Interval_73975 chr17 45791043 45791268 + 0 NA Intergenic Intergenic 23960 ENSMUSG00000097727.8 ENSMUSG00000097727 ENSMUST00000233473 F630040K05Rik lincRNA Interval_161358 chr8 119930884 119931086 + 0 NA intron (ENSMUSG00000092329.1, intron 1 of 15) protein_coding-intron (ENSMUSG00000031826.20, intron 1 of 6) -15415 ENSMUSG00000031826.20 ENSMUSG00000031826 ENSMUST00000139648 Usp10 protein_coding Interval_93670 chr2 75716205 75717559 + 0 NA Intergenic Intergenic 12112 ENSMUSG00000087222.1 ENSMUSG00000087222 ENSMUST00000135244 E030042O20Rik processed_transcript Interval_19773 chr10 108651840 108652161 + 0 NA intron (ENSMUSG00000035864.14, intron 4 of 7) protein_coding-intron (ENSMUSG00000035864.14, intron 4 of 10) 48160 ENSMUSG00000112039.1 ENSMUSG00000112039 ENSMUST00000218023 Gm5136 protein_coding Interval_137461 chr6 72592086 72592921 + 0 NA intron (ENSMUSG00000056698.11, intron 4 of 4) protein_coding-intron (ENSMUSG00000056698.11, intron 2 of 11) 5910 ENSMUSG00000056698.11 ENSMUSG00000056698 ENSMUST00000152705 Elmod3 protein_coding Interval_66863 chr16 38180770 38181642 + 0 NA intron (ENSMUSG00000022812.14, intron 3 of 5) protein_coding-intron (ENSMUSG00000022812.14, intron 3 of 10) 23198 ENSMUSG00000105863.1 ENSMUSG00000105863 ENSMUST00000198387 Gm25617 snoRNA Interval_20879 chr10 121694621 121695002 + 0 NA TTS (ENSMUSG00000047642.15) protein_coding-TTS (ENSMUSG00000047642.15) 10224 ENSMUSG00000112526.1 ENSMUSG00000112526 ENSMUST00000220180 Gm35865 lincRNA Interval_159777 chr8 102790300 102791066 + 0 NA Intergenic Intergenic -9641 ENSMUSG00000110269.1 ENSMUSG00000110269 ENSMUST00000210042 Gm45258 TEC Interval_105181 chr3 83304045 83304332 + 0 NA intron (ENSMUSG00000102692.1, intron 12 of 19) protein_coding-intron (ENSMUSG00000102692.1, intron 12 of 19) -99214 ENSMUSG00000103459.1 ENSMUSG00000103459 ENSMUST00000193692 Gm38096 lincRNA Interval_41880 chr13 3860780 3861013 + 0 NA Intergenic Intergenic 6628 ENSMUSG00000099269.3 ENSMUSG00000099269 ENSMUST00000184271 Calm5 protein_coding Interval_80306 chr18 39030561 39031112 + 0 NA intron (ENSMUSG00000036452.18, intron 1 of 22) protein_coding-intron (ENSMUSG00000036452.18, intron 1 of 22) -36644 ENSMUSG00000086991.1 ENSMUSG00000086991 ENSMUST00000131421 Gm15334 antisense Interval_50266 chr14 11539495 11540446 + 0 NA Intergenic Intergenic -19200 ENSMUSG00000114849.1 ENSMUSG00000114849 ENSMUST00000224543 Gm48595 lincRNA Interval_87885 chr19 56879989 56880576 + 0 NA intron (ENSMUSG00000025082.8, intron 1 of 13) protein_coding-intron (ENSMUSG00000025082.8, intron 1 of 13) 6033 ENSMUSG00000025082.8 ENSMUSG00000025082 ENSMUST00000026068 Vwa2 protein_coding Interval_147445 chr7 67313533 67313764 + 0 NA intron (ENSMUSG00000030557.17, intron 1 of 2) protein_coding-intron (ENSMUSG00000030557.17, intron 3 of 10) -19999 ENSMUSG00000030557.17 ENSMUSG00000030557 ENSMUST00000144057 Mef2a protein_coding Interval_93844 chr2 77386377 77387449 + 0 NA Intergenic Intergenic 51554 ENSMUSG00000082006.1 ENSMUSG00000082006 ENSMUST00000122325 Gm13649 processed_pseudogene Interval_74892 chr17 57099397 57100304 + 0 NA intron (ENSMUSG00000079414.3, intron 2 of 2) lincRNA-intron (ENSMUSG00000079414.3, intron 4 of 4) -5475 ENSMUSG00000035678.8 ENSMUSG00000035678 ENSMUST00000039490 Tnfsf9 protein_coding Interval_31179 chr11 98728792 98729645 + 0 NA promoter-TSS (ENSMUSG00000017210.14) protein_coding-promoter-TSS (ENSMUSG00000017210.14) -11583 ENSMUSG00000058756.13 ENSMUSG00000058756 ENSMUST00000124072 Thra protein_coding Interval_107149 chr3 103927371 103927769 + 0 NA intron (ENSMUSG00000044098.14, intron 1 of 7) protein_coding-intron (ENSMUSG00000044098.14, intron 1 of 7) -1048 ENSMUSG00000044098.14 ENSMUSG00000044098 ENSMUST00000185731 Rsbn1 protein_coding Interval_70803 chr17 14806374 14808169 + 0 NA Intergenic Intergenic -15267 ENSMUSG00000089053.1 ENSMUSG00000089053 ENSMUST00000158428 Gm23352 snRNA Interval_12243 chr1 191072440 191072929 + 0 NA intron (ENSMUSG00000062510.12, intron 4 of 5) protein_coding-intron (ENSMUSG00000062510.12, intron 4 of 4) 5996 ENSMUSG00000103576.1 ENSMUSG00000103576 ENSMUST00000192879 Gm38188 antisense Interval_72208 chr17 28590311 28590833 + 0 NA TTS (ENSMUSG00000004865.16) protein_coding-TTS (ENSMUSG00000004865.16) 14812 ENSMUSG00000062252.9 ENSMUSG00000062252 ENSMUST00000232974 Lhfpl5 protein_coding Interval_105699 chr3 88634268 88634710 + 0 NA TTS (ENSMUSG00000028059.16) protein_coding-TTS (ENSMUSG00000028059.16) -13428 ENSMUSG00000093390.1 ENSMUSG00000093390 ENSMUST00000177314 Gm20652 antisense Interval_89530 chr2 21941280 21941799 + 0 NA Intergenic Intergenic -126287 ENSMUSG00000081467.1 ENSMUSG00000081467 ENSMUST00000119183 Gm13337 processed_pseudogene Interval_21065 chr10 125800395 125802059 + 0 NA Intergenic Intergenic -165007 ENSMUSG00000020105.9 ENSMUSG00000020105 ENSMUST00000219974 Lrig3 protein_coding Interval_168097 chr9 76390652 76391046 + 0 NA Intergenic Intergenic -66993 ENSMUSG00000032360.16 ENSMUSG00000032360 ENSMUST00000184200 Hcrtr2 protein_coding Interval_5617 chr1 90250965 90251156 + 0 NA Intergenic Intergenic 9060 ENSMUSG00000101951.1 ENSMUSG00000101951 ENSMUST00000187649 Gm28721 lincRNA Interval_83333 chr18 84299414 84299641 + 0 NA intron (ENSMUSG00000048410.17, intron 5 of 5) protein_coding-intron (ENSMUSG00000048410.17, intron 2 of 2) 76619 ENSMUSG00000102951.1 ENSMUSG00000102951 ENSMUST00000193817 Gm37216 TEC Interval_40389 chr12 104584084 104585005 + 0 NA Intergenic Intergenic 64576 ENSMUSG00000112954.1 ENSMUSG00000112954 ENSMUST00000222329 Gm49732 lincRNA Interval_147625 chr7 70325287 70326389 + 0 NA intron (ENSMUSG00000109097.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000109097.1, intron 1 of 1) 12005 ENSMUSG00000109097.1 ENSMUSG00000109097 ENSMUST00000207682 Gm29683 lincRNA Interval_110352 chr3 157311629 157311849 + 0 NA intron (ENSMUSG00000040037.13, intron 6 of 6) protein_coding-intron (ENSMUSG00000040037.13, intron 6 of 6) -54259 ENSMUSG00000064510.1 ENSMUSG00000064510 ENSMUST00000082576 Gm22458 snRNA Interval_174208 chrX 139684246 139685786 + 0 NA promoter-TSS (ENSMUSG00000042473.8) protein_coding-promoter-TSS (ENSMUSG00000042473.8) -7527 ENSMUSG00000082018.2 ENSMUSG00000082018 ENSMUST00000118789 Gm6322 processed_pseudogene Interval_29711 chr11 86315004 86315677 + 0 NA intron (ENSMUSG00000034297.14, intron 9 of 29) protein_coding-intron (ENSMUSG00000034297.14, intron 9 of 29) 16843 ENSMUSG00000034297.14 ENSMUSG00000034297 ENSMUST00000144983 Med13 protein_coding Interval_4590 chr1 75293636 75294262 + 0 NA Intergenic Intergenic -19686 ENSMUSG00000033061.15 ENSMUSG00000033061 ENSMUST00000189203 Resp18 protein_coding Interval_161674 chr8 121938737 121939067 + 0 NA intron (ENSMUSG00000025317.7, intron 2 of 6) protein_coding-intron (ENSMUSG00000025317.7, intron 2 of 6) 8945 ENSMUSG00000103904.1 ENSMUSG00000103904 ENSMUST00000195830 Gm37497 TEC Interval_1906 chr1 34462688 34463433 + 0 NA promoter-TSS (ENSMUSG00000026126.15) protein_coding-promoter-TSS (ENSMUSG00000026126.15) 3283 ENSMUSG00000026126.15 ENSMUSG00000026126 ENSMUST00000188019 Ptpn18 protein_coding Interval_65077 chr16 18891220 18891527 + 0 NA intron (ENSMUSG00000022702.16, intron 1 of 15) protein_coding-intron (ENSMUSG00000022702.16, intron 1 of 24) -14764 ENSMUSG00000022706.16 ENSMUSG00000022706 ENSMUST00000232123 Mrpl40 protein_coding Interval_62629 chr15 95804177 95805374 + 0 NA promoter-TSS (ENSMUSG00000115522.1) antisense-promoter-TSS (ENSMUSG00000115522.1) -374 ENSMUSG00000115522.1 ENSMUSG00000115522 ENSMUST00000226780 Gm49173 antisense Interval_127497 chr5 104487261 104487552 + 0 NA intron (ENSMUSG00000034462.9, intron 7 of 8) protein_coding-intron (ENSMUSG00000034462.9, intron 7 of 14) -5365 ENSMUSG00000034462.9 ENSMUSG00000034462 ENSMUST00000133540 Pkd2 protein_coding Interval_48824 chr13 103743311 103743779 + 0 NA TTS (ENSMUSG00000032621.8) protein_coding-TTS (ENSMUSG00000032621.8) 25803 ENSMUSG00000032621.8 ENSMUSG00000032621 ENSMUST00000211139 Srek1 protein_coding Interval_153013 chr7 140864052 140864589 + 0 NA TTS (ENSMUSG00000025485.13) protein_coding-TTS (ENSMUSG00000025485.13) 6869 ENSMUSG00000025485.13 ENSMUSG00000025485 ENSMUST00000152212 Ric8a protein_coding Interval_8398 chr1 138838245 138838681 + 0 NA exon (ENSMUSG00000019230.14, exon 3 of 5) protein_coding-exon (ENSMUSG00000019230.14, exon 3 of 5) 3991 ENSMUSG00000019230.14 ENSMUSG00000019230 ENSMUST00000194557 Lhx9 protein_coding Interval_88920 chr2 12910478 12910779 + 0 NA Intergenic Intergenic -67311 ENSMUSG00000026730.12 ENSMUSG00000026730 ENSMUST00000195521 Pter protein_coding Interval_10829 chr1 175749519 175749767 + 0 NA intron (ENSMUSG00000026523.14, intron 8 of 26) protein_coding-intron (ENSMUSG00000026523.14, intron 9 of 27) -50871 ENSMUSG00000077794.1 ENSMUSG00000077794 ENSMUST00000104606 Gm25560 snRNA Interval_61131 chr15 79435261 79437396 + 0 NA intron (ENSMUSG00000022433.20, intron 2 of 3) protein_coding-intron (ENSMUSG00000022433.20, intron 2 of 10) 5808 ENSMUSG00000022433.20 ENSMUSG00000022433 ENSMUST00000156043 Csnk1e protein_coding Interval_13770 chr10 21923463 21924545 + 0 NA intron (ENSMUSG00000019970.15, intron 1 of 13) protein_coding-intron (ENSMUSG00000019970.15, intron 1 of 13) -45112 ENSMUSG00000080607.1 ENSMUSG00000080607 ENSMUST00000116957 Gm23839 snoRNA Interval_75002 chr17 59583287 59583629 + 0 NA Intergenic Intergenic -13793 ENSMUSG00000077562.1 ENSMUSG00000077562 ENSMUST00000104374 Gm23203 snRNA Interval_22338 chr11 8952542 8952765 + 0 NA intron (ENSMUSG00000046634.12, intron 7 of 49) protein_coding-intron (ENSMUSG00000046634.12, intron 7 of 49) -2114 ENSMUSG00000046634.12 ENSMUSG00000046634 ENSMUST00000155886 Pkd1l1 protein_coding Interval_68050 chr16 64749794 64750327 + 0 NA Intergenic Intergenic 16596 ENSMUSG00000059920.9 ENSMUSG00000059920 ENSMUST00000076991 4930453N24Rik protein_coding Interval_10744 chr1 173978556 173979150 + 0 NA intron (ENSMUSG00000026535.9, intron 1 of 6) protein_coding-intron (ENSMUSG00000026535.9, intron 1 of 6) 3891 ENSMUSG00000026535.9 ENSMUSG00000026535 ENSMUST00000000266 Ifi202b protein_coding Interval_12895 chr10 7831985 7832911 + 0 NA promoter-TSS (ENSMUSG00000039981.6) protein_coding-promoter-TSS (ENSMUSG00000039981.6) -22 ENSMUSG00000039981.6 ENSMUSG00000039981 ENSMUST00000039484 Zc3h12d protein_coding Interval_160909 chr8 114928885 114929383 + 0 NA intron (ENSMUSG00000004637.15, intron 8 of 8) protein_coding-intron (ENSMUSG00000004637.15, intron 8 of 8) 123779 ENSMUSG00000088428.1 ENSMUSG00000088428 ENSMUST00000157803 Gm22556 rRNA Interval_86128 chr19 36909775 36910982 + 0 NA Intergenic Intergenic 9221 ENSMUSG00000047632.11 ENSMUSG00000047632 ENSMUST00000057337 Fgfbp3 protein_coding Interval_46448 chr13 65347812 65349202 + 0 NA promoter-TSS (ENSMUSG00000113406.1) lincRNA-promoter-TSS (ENSMUSG00000113406.1) 90 ENSMUSG00000113406.1 ENSMUSG00000113406 ENSMUST00000220595 Gm7762 lincRNA Interval_47730 chr13 91908233 91909425 + 0 NA intron (ENSMUSG00000021708.17, intron 6 of 14) protein_coding-intron (ENSMUSG00000021708.17, intron 25 of 33) -31944 ENSMUSG00000021622.3 ENSMUSG00000021622 ENSMUST00000022122 Ckmt2 protein_coding Interval_39689 chr12 92473551 92473831 + 0 NA exon (ENSMUSG00000113499.1, exon 1 of 1) processed_pseudogene-exon (ENSMUSG00000113499.1, exon 1 of 1) 270 ENSMUSG00000113499.1 ENSMUSG00000113499 ENSMUST00000223493 Gm18500 processed_pseudogene Interval_132742 chr5 147528299 147528950 + 0 NA intron (ENSMUSG00000029647.15, intron 12 of 18) protein_coding-intron (ENSMUSG00000029647.15, intron 11 of 18) 89234 ENSMUSG00000107085.1 ENSMUSG00000107085 ENSMUST00000202594 Gm42883 processed_pseudogene Interval_158291 chr8 80872428 80873051 + 0 NA intron (ENSMUSG00000031714.9, intron 1 of 10) protein_coding-intron (ENSMUSG00000031714.9, intron 1 of 9) -7201 ENSMUSG00000109587.1 ENSMUSG00000109587 ENSMUST00000211421 Gm31105 antisense Interval_3014 chr1 52169738 52171151 + 0 NA intron (ENSMUSG00000026103.14, intron 3 of 6) protein_coding-intron (ENSMUSG00000026103.14, intron 14 of 17) 20465 ENSMUSG00000026103.14 ENSMUSG00000026103 ENSMUST00000142976 Gls protein_coding Interval_129656 chr5 121562646 121562915 + 0 NA Intergenic Intergenic 10058 ENSMUSG00000029455.14 ENSMUSG00000029455 ENSMUST00000152945 Aldh2 protein_coding Interval_139430 chr6 100125368 100125614 + 0 NA Intergenic Intergenic 18323 ENSMUSG00000107558.1 ENSMUSG00000107558 ENSMUST00000204605 2010109P13Rik TEC Interval_6648 chr1 118525037 118525492 + 0 NA intron (ENSMUSG00000064302.13, intron 3 of 10) protein_coding-intron (ENSMUSG00000064302.13, intron 21 of 39) 12547 ENSMUSG00000064302.13 ENSMUSG00000064302 ENSMUST00000187575 Clasp1 protein_coding Interval_34810 chr12 11498178 11498475 + 0 NA promoter-TSS (ENSMUSG00000113787.1) processed_pseudogene-promoter-TSS (ENSMUSG00000113787.1) -969 ENSMUSG00000113787.1 ENSMUSG00000113787 ENSMUST00000221331 Gm47807 processed_pseudogene Interval_30681 chr11 95866242 95867186 + 0 NA intron (ENSMUSG00000013418.8, intron 10 of 10) protein_coding-intron (ENSMUSG00000013418.8, intron 10 of 10) -7540 ENSMUSG00000085578.1 ENSMUSG00000085578 ENSMUST00000153795 Gm11527 lincRNA Interval_172600 chrX 38084114 38084840 + 0 NA intron (ENSMUSG00000051038.10, intron 1 of 2) protein_coding-intron (ENSMUSG00000051038.10, intron 1 of 2) 664 ENSMUSG00000051038.10 ENSMUSG00000051038 ENSMUST00000054147 Rhox11 protein_coding Interval_99435 chr2 161055127 161055581 + 0 NA intron (ENSMUSG00000057133.14, intron 2 of 16) protein_coding-intron (ENSMUSG00000057133.14, intron 2 of 36) -54057 ENSMUSG00000109780.1 ENSMUSG00000109780 ENSMUST00000209874 Gm45447 antisense Interval_62362 chr15 91077882 91078680 + 0 NA Intergenic Intergenic 4119 ENSMUSG00000115952.1 ENSMUSG00000115952 ENSMUST00000230093 Gm18814 processed_pseudogene Interval_55953 chr14 103125757 103126418 + 0 NA intron (ENSMUSG00000033004.16, intron 78 of 84) protein_coding-intron (ENSMUSG00000033004.16, intron 78 of 84) -26581 ENSMUSG00000022124.15 ENSMUSG00000022124 ENSMUST00000123043 Fbxl3 protein_coding Interval_129237 chr5 118373568 118374016 + 0 NA Intergenic Intergenic 23538 ENSMUSG00000106812.1 ENSMUSG00000106812 ENSMUST00000201179 Gm28563 lincRNA Interval_124344 chr5 44255619 44255881 + 0 NA Intergenic Intergenic -29133 ENSMUSG00000046985.11 ENSMUSG00000046985 ENSMUST00000196151 Tapt1 protein_coding Interval_127487 chr5 104432838 104433259 + 0 NA Intergenic Intergenic -2073 ENSMUSG00000105954.1 ENSMUSG00000105954 ENSMUST00000199139 Gm42793 TEC Interval_119683 chr4 139197078 139198558 + 0 NA intron (ENSMUSG00000028745.18, intron 1 of 1) protein_coding-intron (ENSMUSG00000028745.18, intron 1 of 8) 3707 ENSMUSG00000028745.18 ENSMUSG00000028745 ENSMUST00000132385 Capzb protein_coding Interval_16445 chr10 62906308 62906905 + 0 NA intron (ENSMUSG00000047146.17, intron 1 of 2) protein_coding-intron (ENSMUSG00000047146.17, intron 1 of 2) -12953 ENSMUSG00000088674.1 ENSMUSG00000088674 ENSMUST00000158049 Gm22803 misc_RNA Interval_156172 chr8 45460506 45460790 + 0 NA Intergenic Intergenic -50030 ENSMUSG00000031639.12 ENSMUSG00000031639 ENSMUST00000210354 Tlr3 protein_coding Interval_57544 chr15 12231487 12232987 + 0 NA intron (ENSMUSG00000039458.15, intron 2 of 7) protein_coding-intron (ENSMUSG00000039458.15, intron 2 of 15) 27133 ENSMUSG00000039458.15 ENSMUSG00000039458 ENSMUST00000173071 Mtmr12 protein_coding Interval_83012 chr18 80390809 80391116 + 0 NA Intergenic Intergenic -27626 ENSMUSG00000059852.7 ENSMUSG00000059852 ENSMUST00000184366 Kcng2 protein_coding Interval_46946 chr13 73636247 73636452 + 0 NA promoter-TSS (ENSMUSG00000021611.9) protein_coding-promoter-TSS (ENSMUSG00000021611.9) -11836 ENSMUSG00000021611.9 ENSMUSG00000021611 ENSMUST00000223325 Tert protein_coding Interval_16159 chr10 61121790 61122024 + 0 NA intron (ENSMUSG00000020097.14, intron 3 of 6) protein_coding-intron (ENSMUSG00000020097.14, intron 3 of 14) 3328 ENSMUSG00000104762.1 ENSMUSG00000104762 ENSMUST00000197080 Gm44308 miRNA Interval_170715 chr9 110265922 110267171 + 0 NA Intergenic Intergenic -12402 ENSMUSG00000104988.1 ENSMUSG00000104988 ENSMUST00000200140 Gm43622 TEC Interval_73434 chr17 37223868 37224639 + 0 NA promoter-TSS (ENSMUSG00000064121.4) protein_coding-promoter-TSS (ENSMUSG00000064121.4) 4107 ENSMUSG00000064121.4 ENSMUSG00000064121 ENSMUST00000078209 Olfr96 protein_coding Interval_85569 chr19 28662345 28663937 + 0 NA intron (ENSMUSG00000052942.13, intron 2 of 10) protein_coding-intron (ENSMUSG00000052942.13, intron 2 of 9) -15087 ENSMUSG00000097735.7 ENSMUSG00000097735 ENSMUST00000181625 D930032P07Rik lincRNA Interval_73610 chr17 41178254 41179104 + 0 NA Intergenic Intergenic 77641 ENSMUSG00000117062.1 ENSMUSG00000117062 ENSMUST00000232966 Ldha-ps3 processed_pseudogene Interval_44798 chr13 48715992 48716748 + 0 NA Intergenic Intergenic 47211 ENSMUSG00000113297.1 ENSMUSG00000113297 ENSMUST00000222192 Rpl17-ps6 processed_pseudogene Interval_66738 chr16 36834024 36834278 + 0 NA intron (ENSMUSG00000022837.14, intron 4 of 7) protein_coding-intron (ENSMUSG00000022837.14, intron 4 of 14) 5704 ENSMUSG00000022837.14 ENSMUSG00000022837 ENSMUST00000153373 Iqcb1 protein_coding Interval_32304 chr11 106778889 106780251 + 0 NA promoter-TSS (ENSMUSG00000020718.12) protein_coding-promoter-TSS (ENSMUSG00000020718.12) -97 ENSMUSG00000020718.12 ENSMUSG00000020718 ENSMUST00000126201 Polg2 protein_coding Interval_4235 chr1 72005767 72006730 + 0 NA intron (ENSMUSG00000101764.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000101764.1, intron 1 of 1) -1053 ENSMUSG00000101848.1 ENSMUSG00000101848 ENSMUST00000188213 4933417E11Rik lincRNA Interval_28765 chr11 78176307 78179693 + 0 NA promoter-TSS (ENSMUSG00000019437.17) protein_coding-promoter-TSS (ENSMUSG00000019437.17) -130 ENSMUSG00000019437.17 ENSMUSG00000019437 ENSMUST00000140379 Tlcd1 protein_coding Interval_81190 chr18 56214176 56215017 + 0 NA Intergenic Intergenic -7238 ENSMUSG00000092866.1 ENSMUSG00000092866 ENSMUST00000175125 Gm25476 miRNA Interval_133170 chr5 150295320 150295629 + 0 NA promoter-TSS (ENSMUSG00000056602.12) protein_coding-promoter-TSS (ENSMUSG00000056602.12) 86 ENSMUSG00000056602.12 ENSMUSG00000056602 ENSMUST00000201628 Fry protein_coding Interval_58755 chr15 37793442 37794430 + 0 NA Intergenic Intergenic -28535 ENSMUSG00000086313.1 ENSMUSG00000086313 ENSMUST00000156011 Gm15940 sense_intronic Interval_160244 chr8 107416462 107417168 + 0 NA TTS (ENSMUSG00000003848.14) protein_coding-TTS (ENSMUSG00000003848.14) 4747 ENSMUSG00000003848.14 ENSMUSG00000003848 ENSMUST00000165266 Nob1 protein_coding Interval_22348 chr11 8997505 8997734 + 0 NA exon (ENSMUSG00000020413.11, exon 7 of 7) protein_coding-exon (ENSMUSG00000020413.11, exon 7 of 7) 13509 ENSMUSG00000020413.11 ENSMUSG00000020413 ENSMUST00000127578 Hus1 protein_coding Interval_83317 chr18 84121062 84121569 + 0 NA Intergenic Intergenic -9407 ENSMUSG00000117915.1 ENSMUSG00000117915 ENSMUST00000238103 Gm50309 lincRNA Interval_11438 chr1 181936878 181937328 + 0 NA exon (ENSMUSG00000022995.16, exon 1 of 1) protein_coding-exon (ENSMUSG00000022995.16, exon 1 of 1) 16272 ENSMUSG00000103722.1 ENSMUSG00000103722 ENSMUST00000194331 2700078F05Rik TEC Interval_64251 chr16 9793896 9794113 + 0 NA intron (ENSMUSG00000059003.12, intron 3 of 13) protein_coding-intron (ENSMUSG00000059003.12, intron 1 of 11) 200919 ENSMUSG00000059003.12 ENSMUSG00000059003 ENSMUST00000197242 Grin2a protein_coding Interval_101896 chr3 10486327 10487201 + 0 NA Intergenic Intergenic -46664 ENSMUSG00000027534.16 ENSMUSG00000027534 ENSMUST00000195822 Snx16 protein_coding Interval_105453 chr3 86715375 86715589 + 0 NA intron (ENSMUSG00000028080.16, intron 8 of 17) protein_coding-intron (ENSMUSG00000028080.16, intron 47 of 56) -43314 ENSMUSG00000094392.1 ENSMUSG00000094392 ENSMUST00000119949 Gm3788 processed_pseudogene Interval_71538 chr17 24436929 24437586 + 0 NA promoter-TSS (ENSMUSG00000024132.6) protein_coding-promoter-TSS (ENSMUSG00000024132.6) -127 ENSMUSG00000024132.6 ENSMUSG00000024132 ENSMUST00000235124 Eci1 protein_coding Interval_4648 chr1 75652992 75654881 + 0 NA Intergenic Intergenic 17546 ENSMUSG00000082012.1 ENSMUSG00000082012 ENSMUST00000121823 Gm5257 processed_pseudogene Interval_117518 chr4 124340146 124340595 + 0 NA Intergenic Intergenic -4689 ENSMUSG00000088933.1 ENSMUSG00000088933 ENSMUST00000158308 Gm22983 snRNA Interval_29487 chr11 84396909 84397122 + 0 NA intron (ENSMUSG00000020532.18, intron 54 of 55) protein_coding-intron (ENSMUSG00000020532.18, intron 52 of 53) 116507 ENSMUSG00000018697.14 ENSMUSG00000018697 ENSMUST00000148434 Aatf protein_coding Interval_23075 chr11 19747350 19748727 + 0 NA Intergenic Intergenic 2028 ENSMUSG00000083601.1 ENSMUSG00000083601 ENSMUST00000118065 Gm12028 processed_pseudogene Interval_9569 chr1 159485648 159486248 + 0 NA Intergenic Intergenic -37893 ENSMUSG00000015829.13 ENSMUSG00000015829 ENSMUST00000192457 Tnr protein_coding Interval_46507 chr13 66710682 66711929 + 0 NA Intergenic Intergenic -22953 ENSMUSG00000114549.1 ENSMUSG00000114549 ENSMUST00000224860 Vmn2r-ps106 unprocessed_pseudogene Interval_106768 chr3 100570386 100570736 + 0 NA intron (ENSMUSG00000008763.16, intron 12 of 12) protein_coding-intron (ENSMUSG00000008763.16, intron 12 of 12) 16966 ENSMUSG00000105824.1 ENSMUSG00000105824 ENSMUST00000197836 Gm43466 sense_intronic Interval_69659 chr16 94995367 94996258 + 0 NA intron (ENSMUSG00000043301.16, intron 1 of 2) protein_coding-intron (ENSMUSG00000043301.16, intron 1 of 4) -106592 ENSMUSG00000116667.1 ENSMUSG00000116667 ENSMUST00000232306 Gm49641 processed_pseudogene Interval_12988 chr10 8902735 8903299 + 0 NA promoter-TSS (ENSMUSG00000111731.1) lincRNA-promoter-TSS (ENSMUSG00000111731.1) -964 ENSMUSG00000111731.1 ENSMUSG00000111731 ENSMUST00000215873 Gm48727 lincRNA Interval_13710 chr10 21322936 21323395 + 0 NA intron (ENSMUSG00000112654.1, intron 3 of 3) protein_coding-intron (ENSMUSG00000019977.16, intron 4 of 17) 18892 ENSMUSG00000112654.1 ENSMUSG00000112654 ENSMUST00000218108 4930455C13Rik antisense Interval_97597 chr2 140255732 140256194 + 0 NA intron (ENSMUSG00000074764.11, intron 11 of 19) protein_coding-intron (ENSMUSG00000074764.11, intron 11 of 19) 40865 ENSMUSG00000074764.11 ENSMUSG00000074764 ENSMUST00000120133 Sel1l2 protein_coding Interval_67898 chr16 58883276 58883789 + 0 NA Intergenic Intergenic 8531 ENSMUSG00000044029.6 ENSMUSG00000044029 ENSMUST00000058564 Olfr178 protein_coding Interval_152971 chr7 140141340 140141594 + 0 NA exon (ENSMUSG00000039018.15, exon 3 of 3) protein_coding-exon (ENSMUSG00000039018.15, exon 3 of 3) 3782 ENSMUSG00000039018.15 ENSMUSG00000039018 ENSMUST00000155723 Mtg1 protein_coding Interval_164287 chr9 35024537 35025833 + 0 NA intron (ENSMUSG00000032036.15, intron 13 of 16) protein_coding-intron (ENSMUSG00000032036.15, intron 13 of 16) 47446 ENSMUSG00000032038.7 ENSMUSG00000032038 ENSMUST00000215463 St3gal4 protein_coding Interval_153161 chr7 141972803 141973698 + 0 NA intron (ENSMUSG00000053046.16, intron 1 of 19) protein_coding-intron (ENSMUSG00000053046.16, intron 1 of 18) -18929 ENSMUSG00000092652.1 ENSMUSG00000092652 ENSMUST00000174911 Mir3104 miRNA Interval_161333 chr8 119798240 119798941 + 0 NA Intergenic Intergenic -20196 ENSMUSG00000034105.9 ENSMUSG00000034105 ENSMUST00000212534 Meak7 protein_coding Interval_73570 chr17 40594615 40595305 + 0 NA Intergenic Intergenic -3634 ENSMUSG00000095540.1 ENSMUSG00000095540 ENSMUST00000178498 Esp4 protein_coding Interval_55797 chr14 100238693 100238893 + 0 NA intron (ENSMUSG00000054391.12, intron 3 of 4) antisense-intron (ENSMUSG00000054391.12, intron 3 of 4) 19307 ENSMUSG00000084991.1 ENSMUSG00000084991 ENSMUST00000155141 Gm16260 processed_pseudogene Interval_215 KQ030493.2 157512 158560 + 0 NA NA NA NA NA Interval_167330 chr9 67435545 67435767 + 0 NA intron (ENSMUSG00000052698.15, intron 3 of 58) protein_coding-intron (ENSMUSG00000052698.15, intron 2 of 57) 11153 ENSMUSG00000111412.1 ENSMUSG00000111412 ENSMUST00000216972 Gm47047 antisense Interval_19743 chr10 108428107 108428936 + 0 NA TTS (ENSMUSG00000093762.1) miRNA-TTS (ENSMUSG00000093762.1) 454 ENSMUSG00000093762.1 ENSMUSG00000093762 ENSMUST00000177317 Gm25591 miRNA Interval_159418 chr8 94473491 94473786 + 0 NA intron (ENSMUSG00000074151.13, intron 5 of 52) protein_coding-intron (ENSMUSG00000074151.13, intron 1 of 48) -31408 ENSMUSG00000098511.1 ENSMUSG00000098511 ENSMUST00000184542 Mir7072 miRNA Interval_35192 chr12 17939850 17940381 + 0 NA TTS (ENSMUSG00000113536.1) transcribed_unprocessed_pseudogene-TTS (ENSMUSG00000113536.1) 6951 ENSMUSG00000113536.1 ENSMUSG00000113536 ENSMUST00000221062 Gm49327 transcribed_unprocessed_pseudogene Interval_147717 chr7 72718543 72718961 + 0 NA Intergenic Intergenic -5131 ENSMUSG00000098195.1 ENSMUSG00000098195 ENSMUST00000183257 Gm7693 processed_pseudogene Interval_57788 chr15 19984637 19985685 + 0 NA Intergenic Intergenic 33704 ENSMUSG00000115830.1 ENSMUSG00000115830 ENSMUST00000226614 Gm49176 processed_pseudogene Interval_26582 chr11 59043440 59043656 + 0 NA TTS (ENSMUSG00000061462.18) protein_coding-TTS (ENSMUSG00000061462.18) 40638 ENSMUSG00000072902.4 ENSMUSG00000072902 ENSMUST00000101162 Gm10435 antisense Interval_65367 chr16 21932640 21932842 + 0 NA TTS (ENSMUSG00000033618.7) protein_coding-TTS (ENSMUSG00000033618.7) 14790 ENSMUSG00000022856.9 ENSMUSG00000022856 ENSMUST00000232635 Tmem41a protein_coding Interval_71469 chr17 23983173 23983518 + 0 NA Intergenic Intergenic -2779 ENSMUSG00000024124.10 ENSMUSG00000024124 ENSMUST00000147626 Prss30 protein_coding Interval_156784 chr8 59477582 59478842 + 0 NA Intergenic Intergenic 58906 ENSMUSG00000110381.1 ENSMUSG00000110381 ENSMUST00000209385 Gm34370 lincRNA Interval_75734 chr17 70924566 70925623 + 0 NA promoter-TSS (ENSMUSG00000097154.2) lincRNA-promoter-TSS (ENSMUSG00000097154.2) 1438 ENSMUSG00000117156.1 ENSMUSG00000117156 ENSMUST00000233140 Gm49904 processed_pseudogene Interval_48936 chr13 105154123 105154652 + 0 NA intron (ENSMUSG00000021720.11, intron 7 of 7) protein_coding-intron (ENSMUSG00000021720.11, intron 6 of 6) 69011 ENSMUSG00000077578.1 ENSMUSG00000077578 ENSMUST00000104390 Gm25631 snoRNA Interval_108060 chr3 121262242 121263455 + 0 NA exon (ENSMUSG00000028132.15, exon 1 of 8) protein_coding-exon (ENSMUSG00000028132.15, exon 1 of 8) -12111 ENSMUSG00000106619.1 ENSMUSG00000106619 ENSMUST00000200472 Gm9353 processed_pseudogene Interval_170488 chr9 108284233 108284804 + 0 NA Intergenic Intergenic -5937 ENSMUSG00000032606.7 ENSMUSG00000032606 ENSMUST00000192035 Nicn1 protein_coding Interval_79738 chr18 34808888 34809358 + 0 NA exon (ENSMUSG00000038773.11, exon 8 of 24) protein_coding-exon (ENSMUSG00000038773.11, exon 8 of 24) 12228 ENSMUSG00000038773.11 ENSMUSG00000038773 ENSMUST00000223567 Kdm3b protein_coding Interval_31207 chr11 98902396 98903607 + 0 NA exon (ENSMUSG00000038013.14, exon 8 of 8) protein_coding-exon (ENSMUSG00000038013.14, exon 8 of 8) 11828 ENSMUSG00000038013.14 ENSMUSG00000038013 ENSMUST00000148439 Wipf2 protein_coding Interval_98899 chr2 155882761 155884505 + 0 NA intron (ENSMUSG00000005882.18, intron 7 of 7) protein_coding-intron (ENSMUSG00000005882.18, intron 4 of 6) 46643 ENSMUSG00000005882.18 ENSMUSG00000005882 ENSMUST00000142655 Uqcc1 protein_coding Interval_26905 chr11 61484366 61485311 + 0 NA promoter-TSS (ENSMUSG00000042436.12) protein_coding-promoter-TSS (ENSMUSG00000042436.12) -653 ENSMUSG00000042436.12 ENSMUSG00000042436 ENSMUST00000126308 Mfap4 protein_coding Interval_87401 chr19 48932552 48932886 + 0 NA Intergenic Intergenic 59262 ENSMUSG00000118014.1 ENSMUSG00000118014 ENSMUST00000236524 4930535F04Rik TEC Interval_147774 chr7 73494258 73495028 + 0 NA intron (ENSMUSG00000078671.11, intron 13 of 38) protein_coding-intron (ENSMUSG00000078671.11, intron 13 of 38) 4605 ENSMUSG00000108319.1 ENSMUSG00000108319 ENSMUST00000205458 Gm44552 TEC Interval_67940 chr16 59899829 59900890 + 0 NA intron (ENSMUSG00000055540.15, intron 5 of 8) protein_coding-intron (ENSMUSG00000055540.15, intron 11 of 17) 261150 ENSMUSG00000116894.1 ENSMUSG00000116894 ENSMUST00000232302 4930547E14Rik processed_transcript Interval_133899 chr6 14546135 14547131 + 0 NA Intergenic Intergenic 24392 ENSMUSG00000107657.1 ENSMUSG00000107657 ENSMUST00000204864 Gm44446 processed_pseudogene Interval_20082 chr10 113628005 113628636 + 0 NA Intergenic Intergenic -65557 ENSMUSG00000112087.1 ENSMUSG00000112087 ENSMUST00000218612 Gm40765 lincRNA Interval_70483 chr17 10587390 10588222 + 0 NA intron (ENSMUSG00000037196.6, intron 2 of 2) protein_coding-intron (ENSMUSG00000037196.6, intron 3 of 4) 43261 ENSMUSG00000037196.6 ENSMUSG00000037196 ENSMUST00000160599 Pacrg protein_coding Interval_38546 chr12 80034429 80035484 + 0 NA intron (ENSMUSG00000111933.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000111933.1, intron 1 of 1) 46478 ENSMUSG00000111933.1 ENSMUSG00000111933 ENSMUST00000218323 Gm36660 lincRNA Interval_150933 chr7 116428904 116429128 + 0 NA intron (ENSMUSG00000030660.9, intron 1 of 4) protein_coding-intron (ENSMUSG00000030660.9, intron 1 of 32) -14559 ENSMUSG00000108461.1 ENSMUSG00000108461 ENSMUST00000206201 AV356131 bidirectional_promoter_lncRNA Interval_128248 chr5 112031753 112032504 + 0 NA Intergenic Intergenic -87893 ENSMUSG00000106060.1 ENSMUSG00000106060 ENSMUST00000197648 Gm42488 lincRNA Interval_140427 chr6 118001213 118001594 + 0 NA Intergenic Intergenic 4196 ENSMUSG00000082791.3 ENSMUSG00000082791 ENSMUST00000118257 Gm4875 processed_pseudogene Interval_3807 chr1 63199612 63200767 + 0 NA promoter-TSS (ENSMUSG00000086730.2) processed_transcript-promoter-TSS (ENSMUSG00000086730.2) -519 ENSMUSG00000086730.2 ENSMUSG00000086730 ENSMUST00000189722 Platr12 processed_transcript Interval_123239 chr5 30837402 30838054 + 0 NA intron (ENSMUSG00000029166.14, intron 1 of 1) protein_coding-intron (ENSMUSG00000029166.14, intron 1 of 6) -15116 ENSMUSG00000087258.1 ENSMUSG00000087258 ENSMUST00000143488 Gm15461 antisense Interval_38725 chr12 81623715 81623917 + 0 NA Intergenic Intergenic -7433 ENSMUSG00000042734.6 ENSMUSG00000042734 ENSMUST00000036116 Ttc9 protein_coding Interval_56343 chr14 117906240 117906495 + 0 NA intron (ENSMUSG00000058571.11, intron 7 of 9) protein_coding-intron (ENSMUSG00000058571.11, intron 6 of 8) 47480 ENSMUSG00000098648.1 ENSMUSG00000098648 ENSMUST00000183564 Mir6239 miRNA Interval_54143 chr14 65666026 65666953 + 0 NA promoter-TSS (ENSMUSG00000022032.14) protein_coding-promoter-TSS (ENSMUSG00000022032.14) -9988 ENSMUSG00000022032.14 ENSMUSG00000022032 ENSMUST00000154373 Scara5 protein_coding Interval_75880 chr17 72556701 72557685 + 0 NA intron (ENSMUSG00000055471.7, intron 1 of 3) protein_coding-intron (ENSMUSG00000055471.7, intron 1 of 28) -34550 ENSMUSG00000117247.1 ENSMUSG00000117247 ENSMUST00000233448 Gm49923 TEC Interval_1141 chr1 16087950 16088286 + 0 NA intron (ENSMUSG00000067795.13, intron 1 of 5) protein_coding-intron (ENSMUSG00000067795.13, intron 1 of 5) 5207 ENSMUSG00000067795.13 ENSMUSG00000067795 ENSMUST00000151004 4930444P10Rik protein_coding Interval_13239 chr10 13465725 13465952 + 0 NA intron (ENSMUSG00000062866.16, intron 1 of 12) protein_coding-intron (ENSMUSG00000062866.16, intron 1 of 12) -40199 ENSMUSG00000019810.15 ENSMUSG00000019810 ENSMUST00000166466 Fuca2 protein_coding Interval_31256 chr11 99149042 99150393 + 0 NA intron (ENSMUSG00000037944.8, intron 1 of 2) protein_coding-intron (ENSMUSG00000037944.8, intron 1 of 2) 5360 ENSMUSG00000037944.8 ENSMUSG00000037944 ENSMUST00000103134 Ccr7 protein_coding Interval_90506 chr2 30852490 30853604 + 0 NA intron (ENSMUSG00000039476.13, intron 1 of 1) protein_coding-intron (ENSMUSG00000039476.13, intron 1 of 3) 7603 ENSMUSG00000039476.13 ENSMUSG00000039476 ENSMUST00000137924 Prrx2 protein_coding Interval_166509 chr9 60244575 60245126 + 0 NA intron (ENSMUSG00000032289.15, intron 6 of 16) protein_coding-intron (ENSMUSG00000032289.15, intron 7 of 17) -89292 ENSMUSG00000111296.1 ENSMUSG00000111296 ENSMUST00000214235 2010001M07Rik antisense Interval_89838 chr2 25892469 25893121 + 0 NA intron (ENSMUSG00000058740.14, intron 8 of 30) protein_coding-intron (ENSMUSG00000058740.14, intron 9 of 31) 28827 ENSMUSG00000058740.14 ENSMUSG00000058740 ENSMUST00000199269 Kcnt1 protein_coding Interval_173821 chrX 105093813 105094463 + 0 NA intron (ENSMUSG00000031226.13, intron 5 of 5) protein_coding-intron (ENSMUSG00000031226.13, intron 5 of 5) 14363 ENSMUSG00000031226.13 ENSMUSG00000031226 ENSMUST00000125343 Pbdc1 protein_coding Interval_48898 chr13 104548904 104549716 + 0 NA Intergenic Intergenic -135621 ENSMUSG00000084860.1 ENSMUSG00000084860 ENSMUST00000131215 2610204G07Rik antisense Interval_108890 chr3 133040683 133040950 + 0 NA intron (ENSMUSG00000028018.15, intron 5 of 9) protein_coding-intron (ENSMUSG00000028018.15, intron 5 of 11) 11393 ENSMUSG00000104787.1 ENSMUSG00000104787 ENSMUST00000197045 Gm19148 processed_pseudogene Interval_174583 chrX 159467490 159467720 + 0 NA intron (ENSMUSG00000041020.14, intron 3 of 8) protein_coding-intron (ENSMUSG00000041020.14, intron 2 of 12) 8468 ENSMUSG00000041020.14 ENSMUSG00000041020 ENSMUST00000156172 Map7d2 protein_coding Interval_32727 chr11 110090667 110091572 + 0 NA intron (ENSMUSG00000041828.15, intron 2 of 38) protein_coding-intron (ENSMUSG00000041828.15, intron 2 of 38) -25746 ENSMUSG00000041828.15 ENSMUSG00000041828 ENSMUST00000106662 Abca8a protein_coding Interval_31541 chr11 101259749 101261165 + 0 NA promoter-TSS (ENSMUSG00000035112.17) protein_coding-promoter-TSS (ENSMUSG00000035112.17) 5846 ENSMUSG00000085083.1 ENSMUSG00000085083 ENSMUST00000156205 Gm11615 antisense Interval_54110 chr14 65381313 65382307 + 0 NA intron (ENSMUSG00000034522.10, intron 1 of 2) protein_coding-intron (ENSMUSG00000034522.10, intron 1 of 2) -22400 ENSMUSG00000114357.1 ENSMUSG00000114357 ENSMUST00000225691 Gm48449 antisense Interval_151988 chr7 127981512 127981732 + 0 NA TTS (ENSMUSG00000030795.18) protein_coding-TTS (ENSMUSG00000030795.18) 3490 ENSMUSG00000030795.18 ENSMUSG00000030795 ENSMUST00000079045 Fus protein_coding Interval_66286 chr16 32877313 32878398 + 0 NA promoter-TSS (ENSMUSG00000022800.14) protein_coding-promoter-TSS (ENSMUSG00000022800.14) 48 ENSMUSG00000022800.14 ENSMUSG00000022800 ENSMUST00000127493 Fyttd1 protein_coding Interval_6563 chr1 116793023 116793777 + 0 NA Intergenic Intergenic -9583 ENSMUSG00000094429.2 ENSMUSG00000094429 ENSMUST00000179777 Gm19965 protein_coding Interval_60113 chr15 65858046 65858258 + 0 NA TTS (ENSMUSG00000015002.18) protein_coding-TTS (ENSMUSG00000015002.18) 283 ENSMUSG00000092495.1 ENSMUSG00000092495 ENSMUST00000174002 Gm20405 processed_transcript Interval_63000 chr15 98593943 98594714 + 0 NA promoter-TSS (ENSMUSG00000022994.9) protein_coding-promoter-TSS (ENSMUSG00000022994.9) 4338 ENSMUSG00000100220.1 ENSMUSG00000100220 ENSMUST00000187215 Gm29331 antisense Interval_24622 chr11 35352730 35352977 + 0 NA intron (ENSMUSG00000056427.10, intron 2 of 3) protein_coding-intron (ENSMUSG00000056427.10, intron 4 of 35) 2784 ENSMUSG00000086311.1 ENSMUSG00000086311 ENSMUST00000124503 Gm12122 sense_intronic Interval_44957 chr13 50912885 50913104 + 0 NA Intergenic Intergenic -52838 ENSMUSG00000113509.1 ENSMUSG00000113509 ENSMUST00000223072 Gm19009 processed_pseudogene Interval_56617 chr14 120879999 120881507 + 0 NA Intergenic Intergenic -35094 ENSMUSG00000030662.10 ENSMUSG00000030662 ENSMUST00000228277 Ipo5 protein_coding Interval_109003 chr3 134647071 134647788 + 0 NA Intergenic Intergenic -16664 ENSMUSG00000097031.2 ENSMUSG00000097031 ENSMUST00000180764 Gm26820 lincRNA Interval_70980 chr17 16973703 16973903 + 0 NA TTS (ENSMUSG00000060149.7) lincRNA-TTS (ENSMUSG00000060149.7) 22251 ENSMUSG00000060149.7 ENSMUSG00000060149 ENSMUST00000071374 BC002059 lincRNA Interval_134710 chr6 30572435 30573253 + 0 NA TTS (ENSMUSG00000086854.1) antisense-TTS (ENSMUSG00000086854.1) 3191 ENSMUSG00000086854.1 ENSMUSG00000086854 ENSMUST00000124153 Gm13781 antisense Interval_152382 chr7 132615338 132617058 + 0 NA intron (ENSMUSG00000030946.13, intron 1 of 4) protein_coding-intron (ENSMUSG00000030946.13, intron 1 of 6) -4591 ENSMUSG00000030946.13 ENSMUSG00000030946 ENSMUST00000130672 Lhpp protein_coding Interval_45192 chr13 53109598 53111374 + 0 NA exon (ENSMUSG00000021464.14, exon 9 of 9) protein_coding-exon (ENSMUSG00000021464.14, exon 9 of 9) 81568 ENSMUSG00000112952.1 ENSMUSG00000112952 ENSMUST00000222184 Gm48336 lincRNA Interval_90148 chr2 28533074 28533929 + 0 NA promoter-TSS (ENSMUSG00000026821.16) protein_coding-promoter-TSS (ENSMUSG00000026821.16) 5651 ENSMUSG00000026821.16 ENSMUSG00000026821 ENSMUST00000140704 Ralgds protein_coding Interval_75568 chr17 68182535 68182757 + 0 NA intron (ENSMUSG00000117193.1, intron 4 of 4) lincRNA-intron (ENSMUSG00000117193.1, intron 4 of 4) 5090 ENSMUSG00000117193.1 ENSMUSG00000117193 ENSMUST00000233387 Gm36252 lincRNA Interval_63607 chr15 102315281 102317045 + 0 NA promoter-TSS (ENSMUSG00000058290.4) protein_coding-promoter-TSS (ENSMUSG00000058290.4) -6209 ENSMUSG00000058290.4 ENSMUSG00000058290 ENSMUST00000230222 Espl1 protein_coding Interval_173492 chrX 95880855 95881592 + 0 NA intron (ENSMUSG00000035045.17, intron 3 of 6) protein_coding-intron (ENSMUSG00000035045.17, intron 3 of 6) 66980 ENSMUSG00000057421.12 ENSMUSG00000057421 ENSMUST00000139717 Las1l protein_coding Interval_158947 chr8 88177420 88177988 + 0 NA Intergenic Intergenic 3144 ENSMUSG00000062704.3 ENSMUSG00000062704 ENSMUST00000185395 9430002A10Rik lincRNA Interval_157543 chr8 71319799 71319998 + 0 NA intron (ENSMUSG00000004677.17, intron 3 of 39) protein_coding-intron (ENSMUSG00000004677.17, intron 3 of 39) 47184 ENSMUSG00000004677.17 ENSMUSG00000004677 ENSMUST00000212412 Myo9b protein_coding Interval_79219 chr18 25768555 25768890 + 0 NA Intergenic Intergenic 54952 ENSMUSG00000114511.1 ENSMUSG00000114511 ENSMUST00000224766 0710001A04Rik antisense Interval_94178 chr2 84875609 84875996 + 0 NA intron (ENSMUSG00000050896.12, intron 2 of 2) protein_coding-intron (ENSMUSG00000050896.12, intron 2 of 2) 10908 ENSMUSG00000050896.12 ENSMUSG00000050896 ENSMUST00000151759 Rtn4rl2 protein_coding Interval_61218 chr15 80058330 80058661 + 0 NA Intergenic Intergenic 20096 ENSMUSG00000077734.1 ENSMUSG00000077734 ENSMUST00000104546 Snord83b snoRNA Interval_110241 chr3 154696445 154697451 + 0 NA intron (ENSMUSG00000078161.8, intron 2 of 13) protein_coding-intron (ENSMUSG00000078161.8, intron 2 of 13) 14395 ENSMUSG00000092522.1 ENSMUSG00000092522 ENSMUST00000174217 Gm20389 antisense Interval_19751 chr10 108477501 108477998 + 0 NA Intergenic Intergenic -4901 ENSMUSG00000112065.1 ENSMUSG00000112065 ENSMUST00000217917 Gm47466 processed_pseudogene Interval_71334 chr17 22363575 22364320 + 0 NA intron (ENSMUSG00000044501.17, intron 1 of 2) protein_coding-intron (ENSMUSG00000044501.17, intron 1 of 3) 2494 ENSMUSG00000044501.17 ENSMUSG00000044501 ENSMUST00000121315 Zfp758 protein_coding Interval_59142 chr15 44706323 44707142 + 0 NA intron (ENSMUSG00000022340.15, intron 2 of 5) protein_coding-intron (ENSMUSG00000022340.15, intron 4 of 7) -45548 ENSMUSG00000060530.2 ENSMUSG00000060530 ENSMUST00000081361 A930017M01Rik transcribed_processed_pseudogene Interval_53794 chr14 61862936 61863410 + 0 NA Intergenic Intergenic -58203 ENSMUSG00000114706.1 ENSMUSG00000114706 ENSMUST00000224682 Gm47952 processed_pseudogene Interval_92404 chr2 59564690 59565844 + 0 NA promoter-TSS (ENSMUSG00000081157.1) processed_pseudogene-promoter-TSS (ENSMUSG00000081157.1) -583 ENSMUSG00000081157.1 ENSMUSG00000081157 ENSMUST00000118837 Gm13552 processed_pseudogene Interval_10553 chr1 171792211 171792837 + 0 NA exon (ENSMUSG00000015316.11, exon 5 of 5) protein_coding-exon (ENSMUSG00000015316.11, exon 5 of 5) 25369 ENSMUSG00000015316.11 ENSMUSG00000015316 ENSMUST00000163992 Slamf1 protein_coding Interval_102875 chr3 32458980 32460538 + 0 NA intron (ENSMUSG00000027665.13, intron 17 of 20) protein_coding-intron (ENSMUSG00000027665.13, intron 16 of 19) -1918 ENSMUSG00000027665.13 ENSMUSG00000027665 ENSMUST00000195230 Pik3ca protein_coding Interval_133445 chr6 5110073 5111022 + 0 NA promoter-TSS (ENSMUSG00000032827.15) protein_coding-promoter-TSS (ENSMUSG00000032827.15) 83237 ENSMUSG00000002588.13 ENSMUSG00000002588 ENSMUST00000176933 Pon1 protein_coding Interval_46127 chr13 61871693 61873007 + 0 NA Intergenic Intergenic -45199 ENSMUSG00000113887.1 ENSMUSG00000113887 ENSMUST00000222548 Gm35619 processed_pseudogene Interval_141787 chr6 134515234 134516571 + 0 NA intron (ENSMUSG00000030201.15, intron 2 of 3) protein_coding-intron (ENSMUSG00000030201.15, intron 3 of 22) -48141 ENSMUSG00000030201.15 ENSMUSG00000030201 ENSMUST00000203235 Lrp6 protein_coding Interval_42168 chr13 9443265 9443966 + 0 NA intron (ENSMUSG00000048264.16, intron 1 of 36) protein_coding-intron (ENSMUSG00000048264.16, intron 1 of 38) -2285 ENSMUSG00000112948.1 ENSMUSG00000112948 ENSMUST00000223468 Gm48871 TEC Interval_118049 chr4 128616757 128617920 + 0 NA TTS (ENSMUSG00000062545.4) protein_coding-TTS (ENSMUSG00000062545.4) 1254 ENSMUSG00000062545.4 ENSMUSG00000062545 ENSMUST00000133382 Tlr12 protein_coding Interval_80866 chr18 49660767 49660978 + 0 NA Intergenic Intergenic -79023 ENSMUSG00000088904.1 ENSMUSG00000088904 ENSMUST00000158279 Gm25440 snRNA Interval_131182 chr5 135648565 135649549 + 0 NA Intergenic Intergenic -4721 ENSMUSG00000094372.1 ENSMUSG00000094372 ENSMUST00000179536 Gm21839 pseudogene Interval_100121 chr2 167181195 167181434 + 0 NA intron (ENSMUSG00000050556.9, intron 1 of 1) protein_coding-intron (ENSMUSG00000050556.9, intron 2 of 2) -7388 ENSMUSG00000085151.7 ENSMUSG00000085151 ENSMUST00000147446 1110018N20Rik processed_transcript Interval_56016 chr14 104459900 104461331 + 0 NA Intergenic Intergenic -1279 ENSMUSG00000115424.1 ENSMUSG00000115424 ENSMUST00000228613 D130079A08Rik lincRNA Interval_38394 chr12 78629330 78629531 + 0 NA intron (ENSMUSG00000047454.12, intron 16 of 22) protein_coding-intron (ENSMUSG00000047454.12, intron 17 of 23) -53217 ENSMUSG00000047454.12 ENSMUSG00000047454 ENSMUST00000219629 Gphn protein_coding Interval_56110 chr14 105862169 105862459 + 0 NA intron (ENSMUSG00000115796.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000115796.1, intron 1 of 2) 187 ENSMUSG00000115796.1 ENSMUSG00000115796 ENSMUST00000226354 Gm48970 lincRNA Interval_68711 chr16 84879223 84880405 + 0 NA Intergenic Intergenic 14018 ENSMUSG00000116668.1 ENSMUSG00000116668 ENSMUST00000231785 Gm49568 processed_pseudogene Interval_9065 chr1 153367109 153367538 + 0 NA Intergenic Intergenic 46910 ENSMUSG00000073538.10 ENSMUSG00000073538 ENSMUST00000188717 E330020D12Rik processed_transcript Interval_28662 chr11 77634399 77634709 + 0 NA Intergenic Intergenic -5300 ENSMUSG00000082646.1 ENSMUSG00000082646 ENSMUST00000121688 Gm12732 processed_pseudogene Interval_95701 chr2 114412075 114413142 + 0 NA Intergenic Intergenic -139173 ENSMUSG00000101266.1 ENSMUSG00000101266 ENSMUST00000187452 Gm29234 lincRNA Interval_68353 chr16 73933177 73933848 + 0 NA promoter-TSS (ENSMUSG00000052516.19) protein_coding-promoter-TSS (ENSMUSG00000052516.19) 28348 ENSMUSG00000052516.19 ENSMUSG00000052516 ENSMUST00000156010 Robo2 protein_coding Interval_101540 chr3 4608527 4608742 + 0 NA Intergenic Intergenic -40041 ENSMUSG00000102998.1 ENSMUSG00000102998 ENSMUST00000193445 Gm37763 processed_pseudogene Interval_13094 chr10 11306611 11306944 + 0 NA Intergenic Intergenic 23638 ENSMUSG00000111983.1 ENSMUSG00000111983 ENSMUST00000219929 Gm48666 processed_pseudogene Interval_171197 chr9 115129045 115129581 + 0 NA intron (ENSMUSG00000040875.12, intron 1 of 4) protein_coding-intron (ENSMUSG00000040875.12, intron 2 of 9) 56745 ENSMUSG00000098127.1 ENSMUSG00000098127 ENSMUST00000183244 Gm4665 antisense Interval_15414 chr10 45734378 45735048 + 0 NA Intergenic Intergenic 53727 ENSMUSG00000111036.1 ENSMUSG00000111036 ENSMUST00000216742 Gm47502 transcribed_processed_pseudogene Interval_138524 chr6 88901711 88902827 + 0 NA promoter-TSS (ENSMUSG00000002871.14) protein_coding-promoter-TSS (ENSMUSG00000002871.14) -64 ENSMUSG00000002871.14 ENSMUSG00000002871 ENSMUST00000203155 Tpra1 protein_coding Interval_80375 chr18 40331126 40331389 + 0 NA intron (ENSMUSG00000051401.7, intron 2 of 2) protein_coding-intron (ENSMUSG00000051401.7, intron 1 of 1) -14912 ENSMUSG00000117943.1 ENSMUSG00000117943 ENSMUST00000235668 Gm50403 TEC Interval_111627 chr4 24835486 24835715 + 0 NA intron (ENSMUSG00000040387.16, intron 1 of 8) protein_coding-intron (ENSMUSG00000040387.16, intron 1 of 9) 42920 ENSMUSG00000087399.1 ENSMUSG00000087399 ENSMUST00000142373 Gm11899 antisense Interval_17062 chr10 70963213 70964966 + 0 NA intron (ENSMUSG00000014329.14, intron 3 of 20) protein_coding-intron (ENSMUSG00000014329.14, intron 3 of 21) -15600 ENSMUSG00000014329.14 ENSMUSG00000014329 ENSMUST00000144740 Bicc1 protein_coding Interval_37556 chr12 69852907 69853813 + 0 NA intron (ENSMUSG00000034761.15, intron 3 of 29) protein_coding-intron (ENSMUSG00000034761.15, intron 4 of 30) 33713 ENSMUSG00000113497.1 ENSMUSG00000113497 ENSMUST00000222163 Gm18030 processed_pseudogene Interval_150262 chr7 109090995 109091497 + 0 NA Intergenic Intergenic -15004 ENSMUSG00000094199.1 ENSMUSG00000094199 ENSMUST00000179144 Gm25450 snRNA Interval_54482 chr14 70158987 70161021 + 0 NA promoter-TSS (ENSMUSG00000044551.13) protein_coding-promoter-TSS (ENSMUSG00000044551.13) -502 ENSMUSG00000044551.13 ENSMUSG00000044551 ENSMUST00000140152 9930012K11Rik protein_coding Interval_50906 chr14 20696870 20697076 + 0 NA intron (ENSMUSG00000039357.2, intron 1 of 1) protein_coding-intron (ENSMUSG00000039357.2, intron 2 of 2) 1996 ENSMUSG00000039357.2 ENSMUSG00000039357 ENSMUST00000225804 Fut11 protein_coding Interval_32066 chr11 104991549 104991856 + 0 NA intron (ENSMUSG00000040838.10, intron 131 of 187) protein_coding-intron (ENSMUSG00000040838.10, intron 131 of 187) -39455 ENSMUSG00000082767.1 ENSMUSG00000082767 ENSMUST00000120525 Gm11622 processed_pseudogene Interval_67871 chr16 58444218 58445067 + 0 NA intron (ENSMUSG00000035107.13, intron 3 of 15) protein_coding-intron (ENSMUSG00000035107.13, intron 3 of 15) -15557 ENSMUSG00000035107.13 ENSMUSG00000035107 ENSMUST00000135415 Dcbld2 protein_coding Interval_119446 chr4 137675833 137676597 + 0 NA intron (ENSMUSG00000041351.16, intron 1 of 4) protein_coding-intron (ENSMUSG00000041351.16, intron 1 of 8) 11461 ENSMUSG00000041351.16 ENSMUSG00000041351 ENSMUST00000144059 Rap1gap protein_coding Interval_44634 chr13 46823266 46823501 + 0 NA intron (ENSMUSG00000021375.11, intron 9 of 25) protein_coding-intron (ENSMUSG00000021375.11, intron 9 of 37) -14326 ENSMUSG00000021375.11 ENSMUSG00000021375 ENSMUST00000224923 Kif13a protein_coding Interval_145483 chr7 35142276 35143021 + 0 NA Intergenic Intergenic -1199 ENSMUSG00000108575.1 ENSMUSG00000108575 ENSMUST00000206742 Gm35665 lincRNA Interval_166917 chr9 63918115 63919495 + 0 NA Intergenic Intergenic 8944 ENSMUSG00000111058.1 ENSMUSG00000111058 ENSMUST00000214827 Gm36033 lincRNA Interval_13904 chr10 24527203 24527442 + 0 NA Intergenic Intergenic -12811 ENSMUSG00000083196.1 ENSMUSG00000083196 ENSMUST00000120865 Gm15272 processed_pseudogene Interval_29573 chr11 85011029 85011526 + 0 NA intron (ENSMUSG00000000804.14, intron 26 of 33) protein_coding-intron (ENSMUSG00000000804.14, intron 7 of 14) 53452 ENSMUSG00000000805.18 ENSMUSG00000000805 ENSMUST00000108076 Car4 protein_coding Interval_3340 chr1 57205344 57206260 + 0 NA intron (ENSMUSG00000101429.1, intron 5 of 6) lincRNA-intron (ENSMUSG00000101429.1, intron 5 of 6) 9191 ENSMUSG00000101429.1 ENSMUSG00000101429 ENSMUST00000190488 BC055402 lincRNA Interval_16692 chr10 67053344 67053831 + 0 NA intron (ENSMUSG00000019873.8, intron 2 of 8) protein_coding-intron (ENSMUSG00000019873.8, intron 2 of 7) -16265 ENSMUSG00000019873.8 ENSMUSG00000019873 ENSMUST00000219431 Reep3 protein_coding Interval_21048 chr10 125358578 125359277 + 0 NA intron (ENSMUSG00000020102.15, intron 1 of 8) protein_coding-intron (ENSMUSG00000020102.15, intron 2 of 3) -29612 ENSMUSG00000111943.1 ENSMUSG00000111943 ENSMUST00000220021 Gm47862 TEC Interval_110959 chr4 10865113 10865516 + 0 NA Intergenic Intergenic -8750 ENSMUSG00000106355.1 ENSMUSG00000106355 ENSMUST00000197675 n-TSaga9 miRNA Interval_109224 chr3 138030620 138031088 + 0 NA Intergenic Intergenic 29915 ENSMUSG00000105296.1 ENSMUSG00000105296 ENSMUST00000199386 Gm19708 lincRNA Interval_77389 chr17 88378424 88378917 + 0 NA intron (ENSMUSG00000117351.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000117351.1, intron 1 of 1) 10029 ENSMUSG00000117351.1 ENSMUSG00000117351 ENSMUST00000234514 Gm31615 lincRNA Interval_61519 chr15 82140401 82140692 + 0 NA intron (ENSMUSG00000068114.7, intron 6 of 6) protein_coding-intron (ENSMUSG00000068114.7, intron 6 of 6) -6700 ENSMUSG00000022463.8 ENSMUSG00000022463 ENSMUST00000230955 Srebf2 protein_coding Interval_68273 chr16 71974430 71974598 + 0 NA Intergenic Intergenic 95470 ENSMUSG00000116901.1 ENSMUSG00000116901 ENSMUST00000232427 Gm49667 processed_pseudogene Interval_54353 chr14 67880172 67881553 + 0 NA intron (ENSMUSG00000044447.5, intron 2 of 17) protein_coding-intron (ENSMUSG00000044447.5, intron 2 of 51) -21117 ENSMUSG00000098866.1 ENSMUSG00000098866 ENSMUST00000183732 Mir6539 miRNA Interval_172289 chrX 12425523 12425780 + 0 NA Intergenic Intergenic 31579 ENSMUSG00000081461.3 ENSMUSG00000081461 ENSMUST00000119630 Rpl30-ps11 processed_pseudogene Interval_102853 chr3 32300434 32300720 + 0 NA Intergenic Intergenic 40244 ENSMUSG00000103643.1 ENSMUSG00000103643 ENSMUST00000192855 Gm37770 processed_pseudogene Interval_43388 chr13 29966957 29967290 + 0 NA intron (ENSMUSG00000016477.18, intron 1 of 6) protein_coding-intron (ENSMUSG00000016477.18, intron 1 of 6) 17268 ENSMUSG00000016477.18 ENSMUSG00000016477 ENSMUST00000146092 E2f3 protein_coding Interval_66577 chr16 35270342 35272075 + 0 NA intron (ENSMUSG00000022840.9, intron 1 of 1) protein_coding-intron (ENSMUSG00000022840.9, intron 6 of 20) 546 ENSMUSG00000022840.9 ENSMUSG00000022840 ENSMUST00000232470 Adcy5 protein_coding Interval_164427 chr9 36950139 36950925 + 0 NA intron (ENSMUSG00000035934.16, intron 2 of 9) protein_coding-intron (ENSMUSG00000035934.16, intron 5 of 12) -65226 ENSMUSG00000093721.1 ENSMUSG00000093721 ENSMUST00000176020 Gm3896 antisense Interval_96364 chr2 121990960 121992007 + 0 NA intron (ENSMUSG00000033411.16, intron 7 of 12) protein_coding-intron (ENSMUSG00000033411.16, intron 7 of 12) 35003 ENSMUSG00000033411.16 ENSMUSG00000033411 ENSMUST00000127265 Ctdspl2 protein_coding Interval_87513 chr19 53173483 53173819 + 0 NA intron (ENSMUSG00000025026.15, intron 2 of 2) protein_coding-intron (ENSMUSG00000025026.15, intron 1 of 15) -13788 ENSMUSG00000088855.1 ENSMUSG00000088855 ENSMUST00000158230 Gm24724 snRNA Interval_20721 chr10 120521998 120523799 + 0 NA Intergenic Intergenic -46429 ENSMUSG00000056758.14 ENSMUSG00000056758 ENSMUST00000159310 Hmga2 protein_coding Interval_34133 chr11 120823487 120825084 + 0 NA promoter-TSS (ENSMUSG00000025153.9) protein_coding-promoter-TSS (ENSMUSG00000025153.9) -6744 ENSMUSG00000087638.1 ENSMUSG00000087638 ENSMUST00000138256 Gm11773 antisense Interval_36951 chr12 55555018 55555259 + 0 NA Intergenic Intergenic -10101 ENSMUSG00000063129.1 ENSMUSG00000063129 ENSMUST00000080123 Aldoart2 protein_coding Interval_147190 chr7 64271964 64272622 + 0 NA Intergenic Intergenic -11507 ENSMUSG00000108422.1 ENSMUSG00000108422 ENSMUST00000206927 Gm44765 TEC Interval_36963 chr12 55672995 55673193 + 0 NA intron (ENSMUSG00000021027.17, intron 34 of 39) protein_coding-intron (ENSMUSG00000021027.17, intron 34 of 40) 73667 ENSMUSG00000045440.4 ENSMUSG00000045440 ENSMUST00000051857 Insm2 protein_coding Interval_123332 chr5 31504681 31505273 + 0 NA exon (ENSMUSG00000064037.13, exon 10 of 14) protein_coding-exon (ENSMUSG00000064037.13, exon 10 of 14) -2084 ENSMUSG00000064037.13 ENSMUSG00000064037 ENSMUST00000202515 Gpn1 protein_coding Interval_113492 chr4 55329577 55330727 + 0 NA Intergenic Intergenic -19938 ENSMUSG00000028426.10 ENSMUSG00000028426 ENSMUST00000156263 Rad23b protein_coding Interval_74181 chr17 46929328 46929942 + 0 NA TTS (ENSMUSG00000023977.15) protein_coding-TTS (ENSMUSG00000023977.15) 19157 ENSMUSG00000023978.5 ENSMUSG00000023978 ENSMUST00000162469 Prph2 protein_coding Interval_127309 chr5 102478140 102478497 + 0 NA TTS (ENSMUSG00000106586.1) antisense-TTS (ENSMUSG00000106586.1) 1678 ENSMUSG00000106586.1 ENSMUSG00000106586 ENSMUST00000200080 1700013M08Rik antisense Interval_32543 chr11 108319379 108319621 + 0 NA intron (ENSMUSG00000050965.14, intron 2 of 2) protein_coding-intron (ENSMUSG00000050965.14, intron 2 of 16) -58377 ENSMUSG00000084916.1 ENSMUSG00000084916 ENSMUST00000137462 Gm11656 sense_intronic Interval_16710 chr10 67138611 67139463 + 0 NA intron (ENSMUSG00000037876.17, intron 1 of 25) protein_coding-intron (ENSMUSG00000037876.17, intron 1 of 25) -46711 ENSMUSG00000037876.17 ENSMUSG00000037876 ENSMUST00000173236 Jmjd1c protein_coding Interval_160431 chr8 109456733 109458865 + 0 NA Intergenic Intergenic -32055 ENSMUSG00000092821.1 ENSMUSG00000092821 ENSMUST00000175080 Gm23163 miRNA Interval_168586 chr9 83890556 83890844 + 0 NA Intergenic Intergenic 34322 ENSMUSG00000111769.1 ENSMUSG00000111769 ENSMUST00000217030 Gm36278 lincRNA Interval_18039 chr10 81499172 81499431 + 0 NA exon (ENSMUSG00000044199.6, exon 1 of 1) protein_coding-exon (ENSMUSG00000044199.6, exon 1 of 1) 831 ENSMUSG00000044199.6 ENSMUSG00000044199 ENSMUST00000053646 S1pr4 protein_coding Interval_146233 chr7 44868806 44870300 + 0 NA promoter-TSS (ENSMUSG00000038502.17) protein_coding-promoter-TSS (ENSMUSG00000038502.17) -496 ENSMUSG00000038502.17 ENSMUSG00000038502 ENSMUST00000208655 Ptov1 protein_coding Interval_128189 chr5 111602093 111603290 + 0 NA intron (ENSMUSG00000052848.7, intron 1 of 2) lincRNA-intron (ENSMUSG00000052848.7, intron 1 of 2) 9075 ENSMUSG00000104833.1 ENSMUSG00000104833 ENSMUST00000198964 Gm42489 lincRNA Interval_15587 chr10 51962866 51963206 + 0 NA intron (ENSMUSG00000112659.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000112659.1, intron 1 of 2) 7255 ENSMUSG00000112659.1 ENSMUSG00000112659 ENSMUST00000218796 Gm40646 lincRNA Interval_93355 chr2 72285430 72286425 + 0 NA intron (ENSMUSG00000004085.14, intron 1 of 9) protein_coding-intron (ENSMUSG00000004085.14, intron 1 of 19) 150 ENSMUSG00000004085.14 ENSMUSG00000004085 ENSMUST00000144111 Map3k20 protein_coding Interval_116890 chr4 118015164 118016307 + 0 NA intron (ENSMUSG00000028538.12, intron 1 of 7) protein_coding-intron (ENSMUSG00000028538.12, intron 4 of 11) 16147 ENSMUSG00000028538.12 ENSMUSG00000028538 ENSMUST00000126336 St3gal3 protein_coding Interval_119514 chr4 138033451 138033727 + 0 NA intron (ENSMUSG00000028760.16, intron 2 of 8) protein_coding-intron (ENSMUSG00000028760.16, intron 2 of 9) 40076 ENSMUSG00000028760.16 ENSMUSG00000028760 ENSMUST00000148074 Eif4g3 protein_coding Interval_109238 chr3 138173421 138173837 + 0 NA exon (ENSMUSG00000012042.9, exon 6 of 8) protein_coding-exon (ENSMUSG00000012042.9, exon 6 of 8) -28661 ENSMUSG00000028158.14 ENSMUSG00000028158 ENSMUST00000197680 Mttp protein_coding Interval_14176 chr10 28350210 28350447 + 0 NA intron (ENSMUSG00000019889.10, intron 5 of 14) protein_coding-intron (ENSMUSG00000019889.10, intron 5 of 31) -136207 ENSMUSG00000076377.1 ENSMUSG00000076377 ENSMUST00000102422 Gm22370 miRNA Interval_65879 chr16 30007010 30007186 + 0 NA Intergenic Intergenic -1569 ENSMUSG00000097184.2 ENSMUSG00000097184 ENSMUST00000181485 4632428C04Rik lincRNA Interval_130489 chr5 128275776 128276347 + 0 NA promoter-TSS (ENSMUSG00000034310.8) protein_coding-promoter-TSS (ENSMUSG00000034310.8) -244 ENSMUSG00000034310.8 ENSMUSG00000034310 ENSMUST00000200316 Tmem132d protein_coding Interval_143807 chr7 16435287 16436966 + 0 NA exon (ENSMUSG00000059273.9, exon 14 of 14) protein_coding-exon (ENSMUSG00000059273.9, exon 14 of 14) -16837 ENSMUSG00000019158.9 ENSMUSG00000019158 ENSMUST00000209536 Tmem160 protein_coding Interval_95426 chr2 109199577 109200179 + 0 NA intron (ENSMUSG00000057234.9, intron 2 of 4) protein_coding-intron (ENSMUSG00000057234.9, intron 2 of 5) -51180 ENSMUSG00000076987.1 ENSMUSG00000076987 ENSMUST00000103799 Gm24115 miRNA Interval_4598 chr1 75360235 75362160 + 0 NA promoter-TSS (ENSMUSG00000026208.9) protein_coding-promoter-TSS (ENSMUSG00000026208.9) -329 ENSMUSG00000026208.9 ENSMUSG00000026208 ENSMUST00000125948 Des protein_coding Interval_100343 chr2 168524592 168526162 + 0 NA intron (ENSMUSG00000027544.16, intron 5 of 6) protein_coding-intron (ENSMUSG00000027544.16, intron 5 of 6) 76278 ENSMUSG00000027544.16 ENSMUSG00000027544 ENSMUST00000138546 Nfatc2 protein_coding Interval_81850 chr18 65283805 65284608 + 0 NA intron (ENSMUSG00000032845.16, intron 7 of 9) protein_coding-intron (ENSMUSG00000032845.16, intron 10 of 12) 20250 ENSMUSG00000032845.16 ENSMUSG00000032845 ENSMUST00000182629 Alpk2 protein_coding Interval_161449 chr8 120520560 120521609 + 0 NA exon (ENSMUSG00000097983.1, exon 1 of 1) sense_intronic-exon (ENSMUSG00000097983.1, exon 1 of 1) 469 ENSMUSG00000097983.1 ENSMUSG00000097983 ENSMUST00000182423 Gm26971 sense_intronic Interval_87571 chr19 53514221 53514936 + 0 NA Intergenic Intergenic -14531 ENSMUSG00000034765.6 ENSMUSG00000034765 ENSMUST00000038287 Dusp5 protein_coding Interval_162387 chr8 127706204 127707178 + 0 NA Intergenic Intergenic 108985 ENSMUSG00000088580.1 ENSMUSG00000088580 ENSMUST00000157955 Gm22968 rRNA Interval_133104 chr5 149833289 149833744 + 0 NA Intergenic Intergenic -14231 ENSMUSG00000107214.3 ENSMUSG00000107214 ENSMUST00000200855 4930500F04Rik processed_transcript Interval_113654 chr4 57278934 57280065 + 0 NA intron (ENSMUSG00000038764.14, intron 1 of 25) protein_coding-intron (ENSMUSG00000038764.14, intron 1 of 25) -20597 ENSMUSG00000085654.1 ENSMUSG00000085654 ENSMUST00000129102 Gm12536 lincRNA Interval_83490 chr18 87288453 87289065 + 0 NA Intergenic Intergenic 56827 ENSMUSG00000118250.1 ENSMUSG00000118250 ENSMUST00000236658 Gm5234 processed_pseudogene Interval_105154 chr3 82887920 82889562 + 0 NA intron (ENSMUSG00000086273.7, intron 2 of 3) antisense-intron (ENSMUSG00000086273.7, intron 2 of 2) 11995 ENSMUSG00000086273.7 ENSMUSG00000086273 ENSMUST00000131274 Rbm46os antisense Interval_131338 chr5 136559993 136561024 + 0 NA intron (ENSMUSG00000029705.17, intron 1 of 1) protein_coding-intron (ENSMUSG00000029705.17, intron 1 of 23) 6982 ENSMUSG00000029705.17 ENSMUSG00000029705 ENSMUST00000177305 Cux1 protein_coding Interval_16596 chr10 64743993 64745052 + 0 NA intron (ENSMUSG00000060843.11, intron 13 of 17) protein_coding-intron (ENSMUSG00000060843.11, intron 12 of 16) 375845 ENSMUSG00000100528.1 ENSMUSG00000100528 ENSMUST00000187710 Gm28881 lincRNA Interval_167699 chr9 72132709 72133724 + 0 NA Intergenic Intergenic 4629 ENSMUSG00000099253.1 ENSMUSG00000099253 ENSMUST00000184700 Gm7863 processed_pseudogene Interval_170038 chr9 103932163 103932961 + 0 NA promoter-TSS (ENSMUSG00000099722.3) lincRNA-promoter-TSS (ENSMUSG00000099722.3) 27573 ENSMUSG00000099722.3 ENSMUSG00000099722 ENSMUST00000213265 Gm29154 lincRNA Interval_113081 chr4 47655021 47655852 + 0 NA Intergenic Intergenic 51547 ENSMUSG00000098518.1 ENSMUSG00000098518 ENSMUST00000184188 Gm27668 misc_RNA Interval_41091 chr12 111122020 111122766 + 0 NA Intergenic Intergenic 31193 ENSMUSG00000113200.1 ENSMUSG00000113200 ENSMUST00000221105 Gm48632 TEC Interval_55235 chr14 79546702 79547048 + 0 NA intron (ENSMUSG00000036461.16, intron 2 of 7) protein_coding-intron (ENSMUSG00000036461.16, intron 2 of 8) 15417 ENSMUSG00000093684.2 ENSMUSG00000093684 ENSMUST00000176930 Gm27857 miRNA Interval_134958 chr6 34115012 34115305 + 0 NA intron (ENSMUSG00000056215.13, intron 15 of 19) protein_coding-intron (ENSMUSG00000056215.13, intron 15 of 19) -36771 ENSMUSG00000087356.1 ENSMUSG00000087356 ENSMUST00000126498 Gm13856 antisense Interval_151521 chr7 123240035 123240661 + 0 NA promoter-TSS (ENSMUSG00000030769.15) protein_coding-promoter-TSS (ENSMUSG00000030769.15) -24841 ENSMUSG00000030769.15 ENSMUSG00000030769 ENSMUST00000206180 Slc5a11 protein_coding Interval_135614 chr6 41598530 41598911 + 0 NA Intergenic Intergenic 3585 ENSMUSG00000098970.1 ENSMUSG00000098970 ENSMUST00000183508 Gm27549 snRNA Interval_83706 chr19 3865365 3865592 + 0 NA exon (ENSMUSG00000024843.15, exon 2 of 2) protein_coding-exon (ENSMUSG00000024843.15, exon 2 of 2) 2195 ENSMUSG00000117912.1 ENSMUSG00000117912 ENSMUST00000235621 Gm50383 antisense Interval_66539 chr16 34975835 34977098 + 0 NA intron (ENSMUSG00000022836.11, intron 15 of 17) protein_coding-intron (ENSMUSG00000022836.11, intron 25 of 31) -17588 ENSMUSG00000116665.1 ENSMUSG00000116665 ENSMUST00000232399 E130310I04Rik antisense Interval_48284 chr13 97724303 97725716 + 0 NA Intergenic Intergenic 22402 ENSMUSG00000054944.7 ENSMUSG00000054944 ENSMUST00000123535 5330416C01Rik lincRNA Interval_3217 chr1 54955880 54956300 + 0 NA Intergenic Intergenic -39496 ENSMUSG00000102642.1 ENSMUSG00000102642 ENSMUST00000193052 A130048G24Rik TEC Interval_43098 chr13 23990941 23991619 + 0 NA promoter-TSS (ENSMUSG00000021337.8) protein_coding-promoter-TSS (ENSMUSG00000021337.8) 31276 ENSMUSG00000021338.17 ENSMUSG00000021338 ENSMUST00000136517 Carmil1 protein_coding Interval_3013 chr1 52166871 52167151 + 0 NA intron (ENSMUSG00000026103.14, intron 6 of 6) protein_coding-intron (ENSMUSG00000026103.14, intron 17 of 17) 23898 ENSMUSG00000026103.14 ENSMUSG00000026103 ENSMUST00000142976 Gls protein_coding Interval_171534 chr9 119071703 119072308 + 0 NA TTS (ENSMUSG00000038775.14) protein_coding-TTS (ENSMUSG00000038775.14) 2298 ENSMUSG00000010660.3 ENSMUSG00000010660 ENSMUST00000214491 Plcd1 protein_coding Interval_99484 chr2 162312446 162313178 + 0 NA intron (ENSMUSG00000053141.16, intron 2 of 29) protein_coding-intron (ENSMUSG00000053141.16, intron 2 of 30) -78001 ENSMUSG00000084919.1 ENSMUSG00000084919 ENSMUST00000151688 Ptprtos antisense Interval_20293 chr10 116698601 116699513 + 0 NA Intergenic Intergenic 24466 ENSMUSG00000097104.1 ENSMUSG00000097104 ENSMUST00000181656 Gm26579 lincRNA Interval_88031 chr19 58121157 58121878 + 0 NA intron (ENSMUSG00000054843.9, intron 28 of 28) protein_coding-intron (ENSMUSG00000054843.9, intron 28 of 28) -25486 ENSMUSG00000117871.1 ENSMUSG00000117871 ENSMUST00000235250 Gm50287 lincRNA Interval_17844 chr10 80355993 80357160 + 0 NA exon (ENSMUSG00000035486.14, exon 1 of 15) protein_coding-exon (ENSMUSG00000035486.14, exon 1 of 15) -1401 ENSMUSG00000035486.14 ENSMUSG00000035486 ENSMUST00000146826 Plk5 protein_coding Interval_17210 chr10 75007043 75007316 + 0 NA intron (ENSMUSG00000040009.6, intron 1 of 1) protein_coding-intron (ENSMUSG00000009070.14, intron 4 of 6) 25374 ENSMUSG00000009070.14 ENSMUSG00000009070 ENSMUST00000159761 Rsph14 protein_coding Interval_110131 chr3 153598670 153599395 + 0 NA intron (ENSMUSG00000052544.9, intron 1 of 4) protein_coding-intron (ENSMUSG00000052544.9, intron 1 of 2) -22670 ENSMUSG00000089376.1 ENSMUSG00000089376 ENSMUST00000158751 Gm22136 misc_RNA Interval_159902 chr8 105024805 105025534 + 0 NA Intergenic Intergenic -19997 ENSMUSG00000110549.1 ENSMUSG00000110549 ENSMUST00000212962 Gm45725 unprocessed_pseudogene Interval_129570 chr5 121009053 121010040 + 0 NA promoter-TSS (ENSMUSG00000029608.10) protein_coding-promoter-TSS (ENSMUSG00000029608.10) 534 ENSMUSG00000029608.10 ENSMUSG00000029608 ENSMUST00000200792 Rph3a protein_coding Interval_113745 chr4 58034517 58034733 + 0 NA Intergenic Intergenic -25501 ENSMUSG00000038709.15 ENSMUSG00000038709 ENSMUST00000239406 Txndc8 protein_coding Interval_57664 chr15 14167895 14168132 + 0 NA Intergenic Intergenic 25058 ENSMUSG00000115551.1 ENSMUSG00000115551 ENSMUST00000228924 Gm49115 processed_pseudogene Interval_25773 chr11 51633569 51634442 + 0 NA intron (ENSMUSG00000001054.9, intron 1 of 1) protein_coding-intron (ENSMUSG00000001054.9, intron 1 of 9) -8171 ENSMUSG00000001054.9 ENSMUSG00000001054 ENSMUST00000132854 Rmnd5b protein_coding Interval_128672 chr5 114630800 114631768 + 0 NA promoter-TSS (ENSMUSG00000014158.12) protein_coding-promoter-TSS (ENSMUSG00000014158.12) 13615 ENSMUSG00000014158.12 ENSMUSG00000014158 ENSMUST00000212469 Trpv4 protein_coding Interval_94746 chr2 93954838 93957418 + 0 NA TTS (ENSMUSG00000098004.1) protein_coding-TTS (ENSMUSG00000098004.1) 921 ENSMUSG00000087006.3 ENSMUSG00000087006 ENSMUST00000099689 Gm13889 protein_coding Interval_83975 chr19 5885834 5886445 + 0 NA TTS (ENSMUSG00000024818.15) protein_coding-TTS (ENSMUSG00000024818.15) 8010 ENSMUSG00000044390.5 ENSMUSG00000044390 ENSMUST00000236767 Tigd3 protein_coding Interval_158797 chr8 86720921 86721127 + 0 NA intron (ENSMUSG00000047866.18, intron 12 of 12) protein_coding-intron (ENSMUSG00000047866.18, intron 12 of 12) -24429 ENSMUSG00000074178.3 ENSMUSG00000074178 ENSMUST00000098532 Gm10638 antisense Interval_137340 chr6 71493408 71494882 + 0 NA exon (ENSMUSG00000052656.12, exon 1 of 4) protein_coding-exon (ENSMUSG00000052656.12, exon 1 of 4) -9741 ENSMUSG00000052656.12 ENSMUSG00000052656 ENSMUST00000150069 Rnf103 protein_coding Interval_9467 chr1 157443288 157443796 + 0 NA Intergenic Intergenic -18410 ENSMUSG00000033488.11 ENSMUSG00000033488 ENSMUST00000194220 Cryzl2 protein_coding Interval_30263 chr11 92325891 92326123 + 0 NA Intergenic Intergenic -301594 ENSMUSG00000093113.1 ENSMUSG00000093113 ENSMUST00000175372 Gm22702 miRNA Interval_52310 chr14 44630402 44631240 + 0 NA exon (ENSMUSG00000115801.1, exon 1 of 1) lincRNA-exon (ENSMUSG00000115801.1, exon 1 of 1) -2883 ENSMUSG00000092165.9 ENSMUSG00000092165 ENSMUST00000226458 Gm5624 protein_coding Interval_142762 chr6 145434709 145435945 + 0 NA promoter-TSS (ENSMUSG00000054966.13) protein_coding-promoter-TSS (ENSMUSG00000054966.13) -1246 ENSMUSG00000054966.13 ENSMUSG00000054966 ENSMUST00000142122 Lmntd1 protein_coding Interval_108675 chr3 130030592 130030908 + 0 NA exon (ENSMUSG00000001052.15, exon 1 of 3) protein_coding-intron (ENSMUSG00000001052.15, intron 2 of 5) -37662 ENSMUSG00000063328.6 ENSMUSG00000063328 ENSMUST00000076703 Gm9396 processed_pseudogene Interval_38193 chr12 76289645 76290732 + 0 NA intron (ENSMUSG00000021048.7, intron 10 of 26) protein_coding-intron (ENSMUSG00000021048.7, intron 11 of 27) -12472 ENSMUSG00000112138.1 ENSMUSG00000112138 ENSMUST00000218456 Gm47526 processed_pseudogene Interval_91170 chr2 35641997 35642455 + 0 NA intron (ENSMUSG00000026883.17, intron 1 of 15) protein_coding-intron (ENSMUSG00000026883.17, intron 1 of 15) -68101 ENSMUSG00000026883.17 ENSMUSG00000026883 ENSMUST00000156669 Dab2ip protein_coding Interval_31628 chr11 101832497 101832782 + 0 NA Intergenic Intergenic -47329 ENSMUSG00000017724.14 ENSMUSG00000017724 ENSMUST00000154512 Etv4 protein_coding Interval_170937 chr9 112561160 112561390 + 0 NA Intergenic Intergenic 38746 ENSMUSG00000096353.1 ENSMUSG00000096353 ENSMUST00000179604 Gm24957 snoRNA Interval_168416 chr9 80154922 80156560 + 0 NA Intergenic Intergenic -9486 ENSMUSG00000033577.18 ENSMUSG00000033577 ENSMUST00000138650 Myo6 protein_coding Interval_11216 chr1 180240798 180241712 + 0 NA intron (ENSMUSG00000010609.15, intron 2 of 6) protein_coding-intron (ENSMUSG00000010609.15, intron 2 of 10) -11687 ENSMUSG00000010609.15 ENSMUSG00000010609 ENSMUST00000133340 Psen2 protein_coding Interval_68320 chr16 73027529 73028255 + 0 NA exon (ENSMUSG00000022883.11, exon 26 of 29) protein_coding-exon (ENSMUSG00000022883.11, exon 26 of 29) -44483 ENSMUSG00000116976.1 ENSMUSG00000116976 ENSMUST00000231486 4930500H12Rik processed_transcript Interval_161687 chr8 122054743 122056380 + 0 NA intron (ENSMUSG00000092329.1, intron 1 of 15) protein_coding-intron (ENSMUSG00000092329.1, intron 1 of 15) 77537 ENSMUSG00000099140.1 ENSMUSG00000099140 ENSMUST00000184699 Mir7237 miRNA Interval_5896 chr1 93017179 93017519 + 0 NA TTS (ENSMUSG00000014602.15) protein_coding-TTS (ENSMUSG00000014602.15) 9856 ENSMUSG00000014602.15 ENSMUSG00000014602 ENSMUST00000186861 Kif1a protein_coding Interval_27293 chr11 65530936 65531126 + 0 NA Intergenic Intergenic -95363 ENSMUSG00000065104.1 ENSMUSG00000065104 ENSMUST00000083170 Gm26128 snRNA Interval_66302 chr16 33012066 33012576 + 0 NA TTS (ENSMUSG00000035578.16) protein_coding-TTS (ENSMUSG00000035578.16) 10418 ENSMUSG00000070225.1 ENSMUSG00000070225 ENSMUST00000093713 n-R5s33 rRNA Interval_83323 chr18 84208357 84208735 + 0 NA exon (ENSMUSG00000048410.17, exon 9 of 9) protein_coding-exon (ENSMUSG00000048410.17, exon 9 of 9) 5622 ENSMUSG00000118385.1 ENSMUSG00000118385 ENSMUST00000238064 Gm50311 antisense Interval_49390 chr13 111623635 111624514 + 0 NA intron (ENSMUSG00000086649.1, intron 1 of 1) processed_transcript-intron (ENSMUSG00000086649.1, intron 1 of 1) -30463 ENSMUSG00000096842.1 ENSMUSG00000096842 ENSMUST00000179668 Gm10736 processed_pseudogene Interval_143725 chr7 15945643 15946361 + 0 NA promoter-TSS (ENSMUSG00000041560.12) protein_coding-promoter-TSS (ENSMUSG00000041560.12) 53 ENSMUSG00000041560.12 ENSMUSG00000041560 ENSMUST00000200455 Nop53 protein_coding Interval_21515 chr10 129058554 129060016 + 0 NA Intergenic Intergenic -9287 ENSMUSG00000056853.3 ENSMUSG00000056853 ENSMUST00000071559 Olfr765 protein_coding Interval_135336 chr6 38413417 38413770 + 0 NA intron (ENSMUSG00000056832.14, intron 15 of 17) protein_coding-intron (ENSMUSG00000056832.14, intron 15 of 17) 17326 ENSMUSG00000089905.1 ENSMUSG00000089905 ENSMUST00000162673 Gm16563 processed_pseudogene Interval_99994 chr2 166295650 166296586 + 0 NA Intergenic Intergenic 22210 ENSMUSG00000084840.1 ENSMUSG00000084840 ENSMUST00000152987 Gm11468 lincRNA Interval_158055 chr8 78426358 78427739 + 0 NA Intergenic Intergenic 9597 ENSMUSG00000031688.4 ENSMUSG00000031688 ENSMUST00000034115 Pou4f2 protein_coding Interval_155028 chr8 25811657 25811954 + 0 NA TTS (ENSMUSG00000031574.8) protein_coding-TTS (ENSMUSG00000031574.8) 5250 ENSMUSG00000031574.8 ENSMUSG00000031574 ENSMUST00000033979 Star protein_coding Interval_131357 chr5 136693707 136694204 + 0 NA promoter-TSS (ENSMUSG00000005474.9) protein_coding-promoter-TSS (ENSMUSG00000005474.9) -3824 ENSMUSG00000005474.9 ENSMUSG00000005474 ENSMUST00000197849 Myl10 protein_coding Interval_70275 chr17 7942002 7942234 + 0 NA intron (ENSMUSG00000090069.2, intron 1 of 1) antisense-intron (ENSMUSG00000090069.2, intron 1 of 1) 3771 ENSMUSG00000090069.2 ENSMUSG00000090069 ENSMUST00000159947 E430024P14Rik antisense Interval_156810 chr8 60658131 60659660 + 0 NA intron (ENSMUSG00000031647.10, intron 2 of 2) protein_coding-intron (ENSMUSG00000031647.10, intron 2 of 2) 3791 ENSMUSG00000031647.10 ENSMUSG00000031647 ENSMUST00000034066 Mfap3l protein_coding Interval_162758 chr9 8592328 8593138 + 0 NA intron (ENSMUSG00000031997.9, intron 1 of 2) protein_coding-intron (ENSMUSG00000031997.9, intron 1 of 12) 48537 ENSMUSG00000031997.9 ENSMUSG00000031997 ENSMUST00000214596 Trpc6 protein_coding Interval_63829 chr16 3839297 3839880 + 0 NA exon (ENSMUSG00000059043.2, exon 1 of 1) protein_coding-exon (ENSMUSG00000059043.2, exon 1 of 1) -7680 ENSMUSG00000054939.6 ENSMUSG00000054939 ENSMUST00000041778 Zfp174 protein_coding Interval_101754 chr3 9408497 9409455 + 0 NA intron (ENSMUSG00000097365.7, intron 2 of 2) lincRNA-intron (ENSMUSG00000097365.7, intron 2 of 3) 5896 ENSMUSG00000097365.7 ENSMUSG00000097365 ENSMUST00000181930 C030034L19Rik lincRNA Interval_52632 chr14 48138036 48138753 + 0 NA intron (ENSMUSG00000021846.9, intron 1 of 2) protein_coding-intron (ENSMUSG00000021846.9, intron 1 of 5) 4170 ENSMUSG00000115686.1 ENSMUSG00000115686 ENSMUST00000228432 Gm49310 TEC Interval_69326 chr16 92229962 92230200 + 0 NA Intergenic Intergenic -22593 ENSMUSG00000116878.1 ENSMUSG00000116878 ENSMUST00000231551 Gm29880 processed_transcript Interval_97175 chr2 132017398 132018565 + 0 NA intron (ENSMUSG00000027339.15, intron 1 of 10) protein_coding-intron (ENSMUSG00000027339.15, intron 1 of 10) 3192 ENSMUSG00000027339.15 ENSMUSG00000027339 ENSMUST00000140791 Rassf2 protein_coding Interval_146638 chr7 48994242 48994481 + 0 NA intron (ENSMUSG00000052512.17, intron 2 of 39) protein_coding-intron (ENSMUSG00000052512.17, intron 2 of 39) -54243 ENSMUSG00000109507.1 ENSMUSG00000109507 ENSMUST00000208249 Gm18559 processed_pseudogene Interval_2317 chr1 38012267 38012635 + 0 NA intron (ENSMUSG00000026083.12, intron 1 of 21) protein_coding-intron (ENSMUSG00000026083.12, intron 1 of 23) -14558 ENSMUSG00000058407.12 ENSMUSG00000058407 ENSMUST00000194692 Txndc9 protein_coding Interval_50298 chr14 11720037 11720371 + 0 NA intron (ENSMUSG00000021745.14, intron 1 of 3) protein_coding-intron (ENSMUSG00000021745.14, intron 1 of 29) -47739 ENSMUSG00000114310.1 ENSMUSG00000114310 ENSMUST00000225152 Gm48602 TEC Interval_140971 chr6 123332126 123333442 + 0 NA intron (ENSMUSG00000091260.1, intron 5 of 5) protein_coding-intron (ENSMUSG00000091260.1, intron 5 of 5) 24451 ENSMUSG00000091260.1 ENSMUSG00000091260 ENSMUST00000073948 Vmn2r19 protein_coding Interval_104595 chr3 68615099 68615564 + 0 NA intron (ENSMUSG00000027777.15, intron 3 of 5) protein_coding-intron (ENSMUSG00000027777.15, intron 3 of 7) -67623 ENSMUSG00000084617.1 ENSMUSG00000084617 ENSMUST00000122668 Gm22073 snRNA Interval_15685 chr10 53525287 53526597 + 0 NA Intergenic Intergenic 4243 ENSMUSG00000112440.1 ENSMUSG00000112440 ENSMUST00000220223 Gm47722 processed_pseudogene Interval_141202 chr6 125577649 125579079 + 0 NA exon (ENSMUSG00000001930.17, exon 3 of 3) protein_coding-exon (ENSMUSG00000001930.17, exon 3 of 3) 25401 ENSMUSG00000001930.17 ENSMUSG00000001930 ENSMUST00000146264 Vwf protein_coding Interval_127756 chr5 107437439 107438578 + 0 NA promoter-TSS (ENSMUSG00000111375.4) protein_coding-promoter-TSS (ENSMUSG00000111375.4) 11 ENSMUSG00000111375.4 ENSMUSG00000111375 ENSMUST00000133800 Btbd8 protein_coding Interval_17823 chr10 80279072 80279394 + 0 NA TTS (ENSMUSG00000069565.12) protein_coding-TTS (ENSMUSG00000069565.12) 1069 ENSMUSG00000098672.1 ENSMUSG00000098672 ENSMUST00000184241 Mir6911 miRNA Interval_14857 chr10 40562165 40562435 + 0 NA Intergenic Intergenic 4372 ENSMUSG00000111108.1 ENSMUSG00000111108 ENSMUST00000214505 Gm17795 processed_pseudogene Interval_83153 chr18 82285609 82287059 + 0 NA Intergenic Intergenic 5049 ENSMUSG00000118279.1 ENSMUSG00000118279 ENSMUST00000237322 Gm50298 lincRNA Interval_89548 chr2 22619637 22620794 + 0 NA Intergenic Intergenic -3089 ENSMUSG00000026787.3 ENSMUSG00000026787 ENSMUST00000156728 Gad2 protein_coding Interval_2444 chr1 39406966 39407252 + 0 NA intron (ENSMUSG00000003134.10, intron 2 of 18) protein_coding-intron (ENSMUSG00000003134.10, intron 2 of 19) 12823 ENSMUSG00000102607.1 ENSMUSG00000102607 ENSMUST00000191698 Gm37265 TEC Interval_58508 chr15 35302517 35303122 + 0 NA exon (ENSMUSG00000022330.5, exon 4 of 4) protein_coding-exon (ENSMUSG00000022330.5, exon 4 of 4) 6708 ENSMUSG00000022330.5 ENSMUSG00000022330 ENSMUST00000228152 Osr2 protein_coding Interval_131552 chr5 138097257 138097490 + 0 NA intron (ENSMUSG00000029729.12, intron 4 of 5) protein_coding-intron (ENSMUSG00000029729.12, intron 4 of 5) -9534 ENSMUSG00000106102.1 ENSMUSG00000106102 ENSMUST00000199837 Gm43493 processed_pseudogene Interval_125345 chr5 66337194 66338848 + 0 NA promoter-TSS (ENSMUSG00000029207.16) protein_coding-promoter-TSS (ENSMUSG00000029207.16) 9204 ENSMUSG00000107155.1 ENSMUSG00000107155 ENSMUST00000201645 Gm43793 TEC Interval_160524 chr8 110290715 110291237 + 0 NA intron (ENSMUSG00000059854.8, intron 2 of 25) protein_coding-intron (ENSMUSG00000059854.8, intron 2 of 86) -23514 ENSMUSG00000097409.1 ENSMUSG00000097409 ENSMUST00000181456 Gm26832 antisense Interval_80221 chr18 38366961 38368653 + 0 NA Intergenic Intergenic -7269 ENSMUSG00000118140.1 ENSMUSG00000118140 ENSMUST00000235767 Gm4949 processed_pseudogene Interval_121423 chr4 155710867 155711101 + 0 NA intron (ENSMUSG00000029038.9, intron 1 of 1) protein_coding-intron (ENSMUSG00000029038.9, intron 1 of 4) 5860 ENSMUSG00000029038.9 ENSMUSG00000029038 ENSMUST00000105595 Ssu72 protein_coding Interval_80473 chr18 42530166 42530849 + 0 NA intron (ENSMUSG00000024498.16, intron 4 of 21) protein_coding-intron (ENSMUSG00000024498.16, intron 4 of 20) -22875 ENSMUSG00000024498.16 ENSMUSG00000024498 ENSMUST00000237162 Tcerg1 protein_coding Interval_40124 chr12 101790341 101790706 + 0 NA intron (ENSMUSG00000021186.9, intron 4 of 10) protein_coding-intron (ENSMUSG00000021186.9, intron 4 of 10) 27945 ENSMUSG00000021186.9 ENSMUSG00000021186 ENSMUST00000221373 Fbln5 protein_coding Interval_155465 chr8 33757338 33757982 + 0 NA intron (ENSMUSG00000031585.13, intron 4 of 4) protein_coding-intron (ENSMUSG00000031585.13, intron 4 of 7) -9890 ENSMUSG00000094500.2 ENSMUSG00000094500 ENSMUST00000179364 Smim18 protein_coding Interval_62481 chr15 93379358 93379793 + 0 NA Intergenic Intergenic 18726 ENSMUSG00000022635.9 ENSMUSG00000022635 ENSMUST00000159719 Zcrb1 protein_coding Interval_146610 chr7 47911670 47912618 + 0 NA Intergenic Intergenic 4090 ENSMUSG00000101759.1 ENSMUSG00000101759 ENSMUST00000189787 Gm5734 unprocessed_pseudogene Interval_114642 chr4 83398492 83399061 + 0 NA Intergenic Intergenic -8108 ENSMUSG00000086321.1 ENSMUSG00000086321 ENSMUST00000155822 Gm11413 antisense Interval_91171 chr2 35643443 35644121 + 0 NA intron (ENSMUSG00000026883.17, intron 1 of 15) protein_coding-intron (ENSMUSG00000026883.17, intron 1 of 15) -66545 ENSMUSG00000026883.17 ENSMUSG00000026883 ENSMUST00000156669 Dab2ip protein_coding Interval_172393 chrX 17513029 17513742 + 0 NA Intergenic Intergenic 58256 ENSMUSG00000025040.13 ENSMUSG00000025040 ENSMUST00000142638 Fundc1 protein_coding Interval_113438 chr4 54991961 54993237 + 0 NA intron (ENSMUSG00000060206.11, intron 1 of 12) protein_coding-intron (ENSMUSG00000060206.11, intron 1 of 12) 47551 ENSMUSG00000060206.11 ENSMUSG00000060206 ENSMUST00000079605 Zfp462 protein_coding Interval_171501 chr9 118878668 118879088 + 0 NA intron (ENSMUSG00000039115.13, intron 2 of 3) protein_coding-intron (ENSMUSG00000039115.13, intron 26 of 27) 6809 ENSMUSG00000039115.13 ENSMUSG00000039115 ENSMUST00000155437 Itga9 protein_coding Interval_21952 chr11 5400847 5402342 + 0 NA intron (ENSMUSG00000041961.14, intron 1 of 3) protein_coding-intron (ENSMUSG00000041961.14, intron 1 of 8) -19854 ENSMUSG00000041961.14 ENSMUSG00000041961 ENSMUST00000143746 Znrf3 protein_coding Interval_133784 chr6 12117501 12119253 + 0 NA Intergenic Intergenic -10249 ENSMUSG00000108209.1 ENSMUSG00000108209 ENSMUST00000203296 Gm32222 processed_pseudogene Interval_102624 chr3 28628872 28629637 + 0 NA promoter-TSS (ENSMUSG00000027692.16) protein_coding-promoter-TSS (ENSMUSG00000027692.16) -92263 ENSMUSG00000027690.13 ENSMUSG00000027690 ENSMUST00000169047 Slc2a2 protein_coding Interval_107012 chr3 102957153 102957555 + 0 NA intron (ENSMUSG00000048938.12, intron 1 of 9) protein_coding-intron (ENSMUSG00000048938.12, intron 2 of 10) 1029 ENSMUSG00000048938.12 ENSMUSG00000048938 ENSMUST00000196135 Nr1h5 protein_coding Interval_46763 chr13 70044456 70044663 + 0 NA intron (ENSMUSG00000113074.1, intron 2 of 2) lincRNA-intron (ENSMUSG00000113074.1, intron 2 of 2) -16236 ENSMUSG00000099639.6 ENSMUSG00000099639 ENSMUST00000189784 1700084F23Rik lincRNA Interval_104283 chr3 62610895 62611270 + 0 NA Intergenic Intergenic -8308 ENSMUSG00000043441.5 ENSMUSG00000043441 ENSMUST00000149007 Gpr149 protein_coding Interval_127997 chr5 110148501 110148830 + 0 NA intron (ENSMUSG00000014668.15, intron 8 of 14) protein_coding-intron (ENSMUSG00000014668.15, intron 7 of 17) 5457 ENSMUSG00000105541.1 ENSMUSG00000105541 ENSMUST00000200403 Gm43136 antisense Interval_12527 chr1 194852530 194852870 + 0 NA Intergenic Intergenic -5957 ENSMUSG00000084631.1 ENSMUSG00000084631 ENSMUST00000122682 Gm23885 misc_RNA Interval_138234 chr6 86495748 86498040 + 0 NA exon (ENSMUSG00000101210.1, exon 1 of 1) TEC-exon (ENSMUSG00000101210.1, exon 1 of 1) -1887 ENSMUSG00000100174.1 ENSMUSG00000100174 ENSMUST00000187779 Gm28719 TEC Interval_10024 chr1 165150803 165151748 + 0 NA intron (ENSMUSG00000026572.11, intron 2 of 5) protein_coding-intron (ENSMUSG00000026572.11, intron 3 of 7) -1581 ENSMUSG00000026572.11 ENSMUSG00000026572 ENSMUST00000160350 Tbx19 protein_coding Interval_111014 chr4 11206082 11206542 + 0 NA intron (ENSMUSG00000040738.10, intron 3 of 3) protein_coding-intron (ENSMUSG00000040738.10, intron 26 of 27) 14958 ENSMUSG00000028212.16 ENSMUSG00000028212 ENSMUST00000149075 Ccne2 protein_coding Interval_173177 chrX 73823470 73825304 + 0 NA exon (ENSMUSG00000002006.12, exon 1 of 8) protein_coding-exon (ENSMUSG00000002006.12, exon 1 of 8) 582 ENSMUSG00000002006.12 ENSMUSG00000002006 ENSMUST00000114438 Pdzd4 protein_coding Interval_2713 chr1 43749816 43750648 + 0 NA exon (ENSMUSG00000057363.12, exon 15 of 15) protein_coding-exon (ENSMUSG00000057363.12, exon 15 of 15) -3950 ENSMUSG00000100480.1 ENSMUSG00000100480 ENSMUST00000187764 Gm29156 lincRNA Interval_148460 chr7 81417459 81417823 + 0 NA intron (ENSMUSG00000025586.17, intron 2 of 11) protein_coding-intron (ENSMUSG00000025586.17, intron 2 of 11) -28279 ENSMUSG00000081747.1 ENSMUSG00000081747 ENSMUST00000117118 Rpl7a-ps9 processed_pseudogene Interval_155910 chr8 40973832 40974220 + 0 NA intron (ENSMUSG00000031595.9, intron 2 of 5) protein_coding-intron (ENSMUSG00000031595.9, intron 2 of 5) 42729 ENSMUSG00000045636.16 ENSMUSG00000045636 ENSMUST00000155055 Mtus1 protein_coding Interval_53915 chr14 63371681 63373082 + 0 NA TTS (ENSMUSG00000014453.4) protein_coding-TTS (ENSMUSG00000014453.4) 4037 ENSMUSG00000014453.4 ENSMUSG00000014453 ENSMUST00000224965 Blk protein_coding Interval_113849 chr4 59351020 59351606 + 0 NA intron (ENSMUSG00000038578.15, intron 2 of 3) protein_coding-intron (ENSMUSG00000038578.15, intron 11 of 16) 17553 ENSMUSG00000083979.1 ENSMUSG00000083979 ENSMUST00000117967 Gm12527 processed_pseudogene Interval_45486 chr13 55404642 55405993 + 0 NA intron (ENSMUSG00000021490.11, intron 8 of 12) protein_coding-intron (ENSMUSG00000021490.11, intron 8 of 12) -3002 ENSMUSG00000021490.11 ENSMUSG00000021490 ENSMUST00000223954 Slc34a1 protein_coding Interval_159650 chr8 96010662 96011109 + 0 NA Intergenic Intergenic 89356 ENSMUSG00000110506.1 ENSMUSG00000110506 ENSMUST00000212919 Gm8637 processed_pseudogene Interval_67984 chr16 62717258 62717723 + 0 NA exon (ENSMUSG00000085783.3, exon 1 of 1) processed_pseudogene-exon (ENSMUSG00000085783.3, exon 1 of 1) 453 ENSMUSG00000085783.3 ENSMUSG00000085783 ENSMUST00000122292 Gm9816 processed_pseudogene Interval_75185 chr17 64484527 64484747 + 0 NA Intergenic Intergenic 43831 ENSMUSG00000098984.1 ENSMUSG00000098984 ENSMUST00000185032 Mir6420 miRNA Interval_107357 chr3 106553551 106554290 + 0 NA promoter-TSS (ENSMUSG00000106592.1) unprocessed_pseudogene-promoter-TSS (ENSMUSG00000106592.1) -28 ENSMUSG00000106592.1 ENSMUSG00000106592 ENSMUST00000196938 Gm43070 unprocessed_pseudogene Interval_164311 chr9 35219146 35219564 + 0 NA intron (ENSMUSG00000050471.17, intron 2 of 3) protein_coding-intron (ENSMUSG00000050471.17, intron 6 of 7) 7461 ENSMUSG00000032042.11 ENSMUSG00000032042 ENSMUST00000132799 Srpr protein_coding Interval_93870 chr2 77769091 77769427 + 0 NA intron (ENSMUSG00000027016.17, intron 1 of 3) protein_coding-intron (ENSMUSG00000027016.17, intron 1 of 3) -65987 ENSMUSG00000027016.17 ENSMUSG00000027016 ENSMUST00000129077 Zfp385b protein_coding Interval_83296 chr18 83857353 83857751 + 0 NA Intergenic Intergenic -29946 ENSMUSG00000118024.1 ENSMUSG00000118024 ENSMUST00000237374 Gm50419 lincRNA Interval_47633 chr13 90435936 90436593 + 0 NA Intergenic Intergenic -18164 ENSMUSG00000114204.1 ENSMUSG00000114204 ENSMUST00000225049 Gm47520 lincRNA Interval_17041 chr10 70814098 70814721 + 0 NA TTS (ENSMUSG00000112752.1) lincRNA-TTS (ENSMUSG00000112752.1) 564 ENSMUSG00000112320.1 ENSMUSG00000112320 ENSMUST00000218960 Gm48022 lincRNA Interval_68531 chr16 78427435 78427874 + 0 NA Intergenic Intergenic -3795 ENSMUSG00000064862.1 ENSMUSG00000064862 ENSMUST00000082928 Gm25038 snoRNA Interval_48737 chr13 102639905 102640098 + 0 NA Intergenic Intergenic 35468 ENSMUSG00000114730.1 ENSMUSG00000114730 ENSMUST00000225869 Gm47014 processed_pseudogene Interval_17446 chr10 76791598 76791950 + 0 NA intron (ENSMUSG00000001120.15, intron 7 of 7) protein_coding-intron (ENSMUSG00000001120.15, intron 7 of 15) -3352 ENSMUSG00000001120.15 ENSMUSG00000001120 ENSMUST00000165571 Pcbp3 protein_coding Interval_4390 chr1 73725095 73725707 + 0 NA intron (ENSMUSG00000100301.6, intron 6 of 8) lincRNA-intron (ENSMUSG00000100301.6, intron 6 of 8) 18546 ENSMUSG00000100301.6 ENSMUSG00000100301 ENSMUST00000189514 6030407O03Rik lincRNA Interval_166370 chr9 58701223 58702143 + 0 NA intron (ENSMUSG00000074269.10, intron 2 of 2) protein_coding-intron (ENSMUSG00000074269.10, intron 2 of 5) -5672 ENSMUSG00000093473.1 ENSMUSG00000093473 ENSMUST00000177528 Gm20620 processed_pseudogene Interval_140654 chr6 120319966 120321135 + 0 NA Intergenic Intergenic -25991 ENSMUSG00000041372.10 ENSMUSG00000041372 ENSMUST00000212457 B4galnt3 protein_coding Interval_60080 chr15 64663455 64663896 + 0 NA Intergenic Intergenic -30167 ENSMUSG00000115328.1 ENSMUSG00000115328 ENSMUST00000227641 Gm30691 lincRNA Interval_134293 chr6 24621857 24622897 + 0 NA intron (ENSMUSG00000029684.14, intron 8 of 10) protein_coding-intron (ENSMUSG00000029684.14, intron 8 of 10) 5696 ENSMUSG00000029684.14 ENSMUSG00000029684 ENSMUST00000173399 Wasl protein_coding Interval_51656 chr14 31158178 31158417 + 0 NA promoter-TSS (ENSMUSG00000042286.13) protein_coding-promoter-TSS (ENSMUSG00000042286.13) -15300 ENSMUSG00000042286.13 ENSMUSG00000042286 ENSMUST00000159532 Stab1 protein_coding Interval_143726 chr7 15948045 15948947 + 0 NA exon (ENSMUSG00000074364.6, exon 6 of 6) protein_coding-exon (ENSMUSG00000074364.6, exon 6 of 6) 2248 ENSMUSG00000093249.2 ENSMUSG00000093249 ENSMUST00000175508 Gm24576 misc_RNA Interval_87490 chr19 53016564 53016775 + 0 NA TTS (ENSMUSG00000025027.18) protein_coding-TTS (ENSMUSG00000025027.18) -5913 ENSMUSG00000098730.1 ENSMUSG00000098730 ENSMUST00000184510 Mir6407 miRNA Interval_3592 chr1 59817723 59818397 + 0 NA intron (ENSMUSG00000067336.6, intron 3 of 12) protein_coding-intron (ENSMUSG00000067336.6, intron 3 of 12) 16797 ENSMUSG00000104052.1 ENSMUSG00000104052 ENSMUST00000194136 Gm38125 TEC Interval_33101 chr11 114446025 114447021 + 0 NA intron (ENSMUSG00000062391.3, intron 1 of 2) lincRNA-intron (ENSMUSG00000062391.3, intron 1 of 2) 2337 ENSMUSG00000062391.3 ENSMUSG00000062391 ENSMUST00000141088 4932435O22Rik lincRNA Interval_133141 chr5 150142334 150142805 + 0 NA intron (ENSMUSG00000056602.12, intron 1 of 6) protein_coding-intron (ENSMUSG00000056602.12, intron 1 of 4) -59774 ENSMUSG00000107384.1 ENSMUSG00000107384 ENSMUST00000202037 Gm42557 antisense Interval_16089 chr10 60655170 60655708 + 0 NA intron (ENSMUSG00000012819.15, intron 3 of 7) protein_coding-intron (ENSMUSG00000012819.15, intron 1 of 66) 97344 ENSMUSG00000020100.15 ENSMUSG00000020100 ENSMUST00000144989 Slc29a3 protein_coding Interval_74344 chr17 49189924 49190253 + 0 NA Intergenic Intergenic -24330 ENSMUSG00000117115.1 ENSMUSG00000117115 ENSMUST00000233339 Gm9586 processed_pseudogene Interval_125042 chr5 64055487 64056476 + 0 NA Intergenic Intergenic 11003 ENSMUSG00000106219.1 ENSMUSG00000106219 ENSMUST00000198687 5830416I19Rik lincRNA Interval_132664 chr5 147023266 147023979 + 0 NA intron (ENSMUSG00000016520.7, intron 8 of 9) protein_coding-intron (ENSMUSG00000016520.7, intron 8 of 9) -4587 ENSMUSG00000016520.7 ENSMUSG00000016520 ENSMUST00000123092 Lnx2 protein_coding Interval_161511 chr8 120827886 120828738 + 0 NA intron (ENSMUSG00000092329.1, intron 1 of 15) protein_coding-intron (ENSMUSG00000092329.1, intron 1 of 15) -51894 ENSMUSG00000097087.1 ENSMUSG00000097087 ENSMUST00000181778 Gm26878 lincRNA Interval_29356 chr11 83418559 83419478 + 0 NA TTS (ENSMUSG00000020684.14) protein_coding-TTS (ENSMUSG00000020684.14) 9330 ENSMUSG00000020684.14 ENSMUSG00000020684 ENSMUST00000164425 Rasl10b protein_coding Interval_117852 chr4 126619456 126620784 + 0 NA Intergenic Intergenic 10266 ENSMUSG00000073755.4 ENSMUSG00000073755 ENSMUST00000164362 5730409E04Rik protein_coding Interval_29049 chr11 80055422 80056424 + 0 NA TTS (ENSMUSG00000017561.16) protein_coding-TTS (ENSMUSG00000017561.16) 24938 ENSMUSG00000017561.16 ENSMUSG00000017561 ENSMUST00000178280 Crlf3 protein_coding Interval_100861 chr2 172969298 172970988 + 0 NA Intergenic Intergenic -15734 ENSMUSG00000005883.15 ENSMUSG00000005883 ENSMUST00000156471 Spo11 protein_coding Interval_32104 chr11 105269479 105270412 + 0 NA intron (ENSMUSG00000020694.17, intron 6 of 6) protein_coding-intron (ENSMUSG00000020694.17, intron 17 of 20) 61092 ENSMUSG00000020694.17 ENSMUSG00000020694 ENSMUST00000146910 Tlk2 protein_coding Interval_43636 chr13 34271965 34272420 + 0 NA intron (ENSMUSG00000038267.15, intron 3 of 9) protein_coding-intron (ENSMUSG00000038267.15, intron 3 of 10) 5060 ENSMUSG00000088573.1 ENSMUSG00000088573 ENSMUST00000157948 Gm24530 misc_RNA Interval_117341 chr4 123111550 123111774 + 0 NA intron (ENSMUSG00000002384.2, intron 1 of 6) protein_coding-intron (ENSMUSG00000002384.2, intron 1 of 6) -4604 ENSMUSG00000076438.5 ENSMUSG00000076438 ENSMUST00000102648 Oxct2b protein_coding Interval_60392 chr15 73457443 73457645 + 0 NA Intergenic Intergenic -28634 ENSMUSG00000116174.1 ENSMUSG00000116174 ENSMUST00000229262 Gm10362 processed_pseudogene Interval_15357 chr10 45070655 45073532 + 0 NA exon (ENSMUSG00000019849.11, exon 2 of 15) protein_coding-exon (ENSMUSG00000019849.11, exon 2 of 15) 4890 ENSMUSG00000019849.11 ENSMUSG00000019849 ENSMUST00000099858 Prep protein_coding Interval_61497 chr15 81989442 81990782 + 0 NA intron (ENSMUSG00000022471.14, intron 1 of 4) protein_coding-intron (ENSMUSG00000022471.14, intron 1 of 4) 9572 ENSMUSG00000061633.3 ENSMUSG00000061633 ENSMUST00000074608 1700029P11Rik protein_coding Interval_129545 chr5 120824631 120825474 + 0 NA TTS (ENSMUSG00000029605.16) polymorphic_pseudogene-TTS (ENSMUSG00000029605.16) 12414 ENSMUSG00000029605.16 ENSMUSG00000029605 ENSMUST00000183291 Oas1b polymorphic_pseudogene Interval_130737 chr5 130044074 130044380 + 0 NA intron (ENSMUSG00000025532.13, intron 1 of 1) protein_coding-intron (ENSMUSG00000025532.13, intron 4 of 5) 14916 ENSMUSG00000025532.13 ENSMUSG00000025532 ENSMUST00000202691 Crcp protein_coding Interval_61791 chr15 84183394 84185079 + 0 NA intron (ENSMUSG00000116227.1, intron 1 of 2) protein_coding-intron (ENSMUSG00000041653.5, intron 7 of 7) -1221 ENSMUSG00000116041.1 ENSMUSG00000116041 ENSMUST00000229976 Gm20369 processed_pseudogene Interval_97972 chr2 146288126 146288523 + 0 NA intron (ENSMUSG00000037110.20, intron 39 of 41) protein_coding-intron (ENSMUSG00000037110.20, intron 38 of 40) -17223 ENSMUSG00000042938.8 ENSMUSG00000042938 ENSMUST00000122417 Gm14117 processed_pseudogene Interval_36201 chr12 38901360 38901844 + 0 NA Intergenic Intergenic 5351 ENSMUSG00000113933.1 ENSMUSG00000113933 ENSMUST00000223252 Gm34611 lincRNA Interval_16228 chr10 61550114 61550418 + 0 NA intron (ENSMUSG00000037151.8, intron 4 of 4) protein_coding-intron (ENSMUSG00000037151.8, intron 4 of 4) -20645 ENSMUSG00000112255.1 ENSMUSG00000112255 ENSMUST00000219114 Gm47594 TEC Interval_90227 chr2 29132716 29133063 + 0 NA intron (ENSMUSG00000043535.13, intron 4 of 25) protein_coding-intron (ENSMUSG00000043535.13, intron 4 of 25) 7003 ENSMUSG00000043535.13 ENSMUSG00000043535 ENSMUST00000145422 Setx protein_coding Interval_167097 chr9 65222547 65223883 + 0 NA intron (ENSMUSG00000032392.11, intron 2 of 6) protein_coding-intron (ENSMUSG00000032392.11, intron 2 of 6) -21374 ENSMUSG00000095892.1 ENSMUSG00000095892 ENSMUST00000093721 Rnu5g snRNA Interval_121579 chr5 3576839 3579293 + 0 NA promoter-TSS (ENSMUSG00000008307.11) protein_coding-promoter-TSS (ENSMUSG00000008307.11) -157 ENSMUSG00000008307.11 ENSMUSG00000008307 ENSMUST00000156973 1700109H08Rik protein_coding Interval_27855 chr11 70409576 70410941 + 0 NA promoter-TSS (ENSMUSG00000018921.11) protein_coding-promoter-TSS (ENSMUSG00000018921.11) -227 ENSMUSG00000018921.11 ENSMUSG00000018921 ENSMUST00000135148 Pelp1 protein_coding Interval_115059 chr4 89123328 89123662 + 0 NA TTS (ENSMUSG00000085569.1) processed_transcript-TTS (ENSMUSG00000085569.1) 4731 ENSMUSG00000085569.1 ENSMUSG00000085569 ENSMUST00000138655 Gm12602 processed_transcript Interval_84823 chr19 17136662 17139097 + 0 NA promoter-TSS (ENSMUSG00000039126.10) protein_coding-promoter-TSS (ENSMUSG00000039126.10) 12232 ENSMUSG00000039126.10 ENSMUSG00000039126 ENSMUST00000224117 Prune2 protein_coding Interval_85452 chr19 26650804 26651731 + 0 NA intron (ENSMUSG00000024921.17, intron 7 of 32) protein_coding-intron (ENSMUSG00000024921.17, intron 7 of 32) -27857 ENSMUSG00000093628.1 ENSMUSG00000093628 ENSMUST00000177453 Gm20616 antisense Interval_130567 chr5 128889195 128890283 + 0 NA intron (ENSMUSG00000029420.14, intron 1 of 20) protein_coding-intron (ENSMUSG00000029420.14, intron 1 of 21) -114189 ENSMUSG00000106522.1 ENSMUSG00000106522 ENSMUST00000199333 Gm42871 sense_intronic Interval_102286 chr3 20565975 20566219 + 0 NA Intergenic Intergenic -59889 ENSMUSG00000102636.1 ENSMUSG00000102636 ENSMUST00000195457 Gm31466 lincRNA Interval_169092 chr9 92257385 92257611 + 0 NA intron (ENSMUSG00000032369.13, intron 1 of 8) protein_coding-intron (ENSMUSG00000032369.13, intron 1 of 8) -8797 ENSMUSG00000032369.13 ENSMUSG00000032369 ENSMUST00000187952 Plscr1 protein_coding Interval_3125 chr1 53717745 53718011 + 0 NA Intergenic Intergenic -11094 ENSMUSG00000096141.2 ENSMUSG00000096141 ENSMUST00000189677 Dnah7a protein_coding Interval_110094 chr3 153250706 153251185 + 0 NA intron (ENSMUSG00000052544.9, intron 3 of 4) protein_coding-intron (ENSMUSG00000052544.9, intron 2 of 2) 47704 ENSMUSG00000105023.1 ENSMUSG00000105023 ENSMUST00000197231 1700012D16Rik sense_intronic Interval_62274 chr15 89385017 89386374 + 0 NA exon (ENSMUSG00000091680.3, exon 1 of 1) protein_coding-exon (ENSMUSG00000091680.3, exon 1 of 1) 778 ENSMUSG00000091680.3 ENSMUSG00000091680 ENSMUST00000166926 Klhdc7b protein_coding Interval_80289 chr18 38855425 38856167 + 0 NA intron (ENSMUSG00000036585.16, intron 2 of 4) protein_coding-intron (ENSMUSG00000036585.16, intron 2 of 3) 11207 ENSMUSG00000036585.16 ENSMUSG00000036585 ENSMUST00000134864 Fgf1 protein_coding Interval_168706 chr9 86155852 86156177 + 0 NA Intergenic Intergenic 20001 ENSMUSG00000111418.1 ENSMUSG00000111418 ENSMUST00000216119 Gm18016 processed_pseudogene Interval_115786 chr4 104231894 104232145 + 0 NA intron (ENSMUSG00000028519.16, intron 3 of 9) protein_coding-intron (ENSMUSG00000028519.16, intron 3 of 9) 291060 ENSMUSG00000081696.2 ENSMUSG00000081696 ENSMUST00000118427 Gm12717 processed_pseudogene Interval_2786 chr1 45003118 45003343 + 0 NA Intergenic Intergenic -78337 ENSMUSG00000101251.1 ENSMUSG00000101251 ENSMUST00000188283 Gm3496 processed_pseudogene Interval_9903 chr1 163975358 163975632 + 0 NA intron (ENSMUSG00000041406.14, intron 10 of 24) protein_coding-intron (ENSMUSG00000041406.14, intron 10 of 23) 19046 ENSMUSG00000041406.14 ENSMUSG00000041406 ENSMUST00000162949 BC055324 protein_coding Interval_137057 chr6 67029458 67031224 + 0 NA Intergenic Intergenic 3298 ENSMUSG00000064987.2 ENSMUSG00000064987 ENSMUST00000083053 Gm25260 snRNA Interval_22504 chr11 11217399 11217621 + 0 NA intron (ENSMUSG00000050830.17, intron 3 of 4) protein_coding-intron (ENSMUSG00000050830.17, intron 2 of 3) 76996 ENSMUSG00000088861.1 ENSMUSG00000088861 ENSMUST00000158236 Gm23065 rRNA Interval_140506 chr6 119008458 119009522 + 0 NA intron (ENSMUSG00000051331.16, intron 3 of 3) protein_coding-intron (ENSMUSG00000051331.16, intron 3 of 46) 174090 ENSMUSG00000089115.1 ENSMUSG00000089115 ENSMUST00000158490 Gm25905 snRNA Interval_75447 chr17 66590454 66590825 + 0 NA intron (ENSMUSG00000024105.3, intron 2 of 3) protein_coding-intron (ENSMUSG00000024105.3, intron 2 of 3) 3982 ENSMUSG00000024105.3 ENSMUSG00000024105 ENSMUST00000024914 Themis3 protein_coding Interval_29592 chr11 85222339 85222838 + 0 NA intron (ENSMUSG00000018481.9, intron 1 of 12) protein_coding-intron (ENSMUSG00000018481.9, intron 1 of 12) 5991 ENSMUSG00000080791.1 ENSMUSG00000080791 ENSMUST00000119676 Akirin1-ps processed_pseudogene Interval_90199 chr2 28980206 28980467 + 0 NA intron (ENSMUSG00000079502.8, intron 3 of 5) protein_coding-intron (ENSMUSG00000079502.8, intron 3 of 5) -45727 ENSMUSG00000083773.4 ENSMUSG00000083773 ENSMUST00000121658 Gm13394 processed_pseudogene Interval_128160 chr5 111383238 111384809 + 0 NA TTS (ENSMUSG00000050017.11) protein_coding-TTS (ENSMUSG00000050017.11) 4266 ENSMUSG00000104559.1 ENSMUSG00000104559 ENSMUST00000199149 Gm43118 antisense Interval_132808 chr5 147992384 147993164 + 0 NA intron (ENSMUSG00000029651.16, intron 1 of 14) protein_coding-intron (ENSMUSG00000029651.16, intron 1 of 14) -35608 ENSMUSG00000085565.1 ENSMUSG00000085565 ENSMUST00000138406 Gm15721 lincRNA Interval_30549 chr11 95065884 95066284 + 0 NA intron (ENSMUSG00000001507.16, intron 3 of 4) protein_coding-intron (ENSMUSG00000001507.16, intron 3 of 25) 10713 ENSMUSG00000001507.16 ENSMUSG00000001507 ENSMUST00000145671 Itga3 protein_coding Interval_62590 chr15 95042015 95042730 + 0 NA intron (ENSMUSG00000063296.5, intron 6 of 7) protein_coding-intron (ENSMUSG00000063296.5, intron 6 of 7) -55234 ENSMUSG00000077447.1 ENSMUSG00000077447 ENSMUST00000104259 Gm23129 snoRNA Interval_166828 chr9 63069325 63070423 + 0 NA Intergenic Intergenic 13099 ENSMUSG00000111144.1 ENSMUSG00000111144 ENSMUST00000214934 Gm48193 lincRNA Interval_91284 chr2 37397162 37397628 + 0 NA exon (ENSMUSG00000075376.10, exon 1 of 1) protein_coding-exon (ENSMUSG00000075376.10, exon 1 of 1) 2762 ENSMUSG00000077756.1 ENSMUSG00000077756 ENSMUST00000104568 Snord90 snoRNA Interval_83321 chr18 84192590 84193052 + 0 NA intron (ENSMUSG00000048410.17, intron 2 of 2) protein_coding-intron (ENSMUSG00000048410.17, intron 2 of 2) -10103 ENSMUSG00000118385.1 ENSMUSG00000118385 ENSMUST00000238064 Gm50311 antisense Interval_148976 chr7 90569128 90570071 + 0 NA intron (ENSMUSG00000052572.19, intron 3 of 27) protein_coding-intron (ENSMUSG00000052572.19, intron 3 of 27) -93604 ENSMUSG00000030614.8 ENSMUSG00000030614 ENSMUST00000123622 Tmem126b protein_coding Interval_157423 chr8 70258725 70259142 + 0 NA promoter-TSS (ENSMUSG00000036054.15) protein_coding-promoter-TSS (ENSMUSG00000036054.15) -24101 ENSMUSG00000003573.15 ENSMUSG00000003573 ENSMUST00000135368 Homer3 protein_coding Interval_103941 chr3 55236978 55237818 + 0 NA Intergenic Intergenic 55370 ENSMUSG00000027794.4 ENSMUSG00000027794 ENSMUST00000029369 Sohlh2 protein_coding Interval_137346 chr6 71567959 71569441 + 0 NA intron (ENSMUSG00000053119.11, intron 2 of 2) protein_coding-intron (ENSMUSG00000053119.11, intron 3 of 5) -24586 ENSMUSG00000107406.1 ENSMUSG00000107406 ENSMUST00000205011 1700040L08Rik antisense Interval_152396 chr7 132741597 132742871 + 0 NA intron (ENSMUSG00000030956.15, intron 3 of 3) protein_coding-intron (ENSMUSG00000030956.15, intron 4 of 4) 60516 ENSMUSG00000030956.15 ENSMUSG00000030956 ENSMUST00000148303 Fam53b protein_coding Interval_46705 chr13 69509431 69510599 + 0 NA intron (ENSMUSG00000034575.13, intron 5 of 12) protein_coding-intron (ENSMUSG00000034575.13, intron 5 of 12) -3985 ENSMUSG00000113486.1 ENSMUSG00000113486 ENSMUST00000221578 Gm48676 processed_pseudogene Interval_124617 chr5 52450983 52451434 + 0 NA intron (ENSMUSG00000045790.10, intron 1 of 4) protein_coding-intron (ENSMUSG00000045790.10, intron 1 of 11) 10049 ENSMUSG00000106380.1 ENSMUSG00000106380 ENSMUST00000196113 Gm3519 antisense Interval_38768 chr12 82186985 82188075 + 0 NA intron (ENSMUSG00000042700.16, intron 2 of 3) protein_coding-intron (ENSMUSG00000042700.16, intron 1 of 22) 18054 ENSMUSG00000042700.16 ENSMUSG00000042700 ENSMUST00000221327 Sipa1l1 protein_coding Interval_47984 chr13 94862337 94863305 + 0 NA Intergenic Intergenic -19779 ENSMUSG00000021685.11 ENSMUSG00000021685 ENSMUST00000184985 Otp protein_coding Interval_97709 chr2 143082367 143082658 + 0 NA TTS (ENSMUSG00000027416.2) protein_coding-TTS (ENSMUSG00000027416.2) 4039 ENSMUSG00000027416.2 ENSMUSG00000027416 ENSMUST00000028902 Otor protein_coding Interval_63959 chr16 4846703 4847253 + 0 NA intron (ENSMUSG00000022518.16, intron 1 of 6) protein_coding-intron (ENSMUSG00000022518.16, intron 1 of 15) -17345 ENSMUSG00000022518.16 ENSMUSG00000022518 ENSMUST00000180939 4930562C15Rik protein_coding Interval_4492 chr1 74543393 74543601 + 0 NA promoter-TSS (ENSMUSG00000026173.15) protein_coding-promoter-TSS (ENSMUSG00000026173.15) -16930 ENSMUSG00000026173.15 ENSMUSG00000026173 ENSMUST00000135111 Plcd4 protein_coding Interval_30658 chr11 95729339 95729782 + 0 NA intron (ENSMUSG00000075595.9, intron 1 of 6) protein_coding-intron (ENSMUSG00000075595.9, intron 1 of 5) -16806 ENSMUSG00000086191.1 ENSMUSG00000086191 ENSMUST00000155531 Zfp652os antisense Interval_26358 chr11 57239897 57240538 + 0 NA intron (ENSMUSG00000020524.16, intron 10 of 15) protein_coding-intron (ENSMUSG00000020524.16, intron 10 of 15) 63699 ENSMUSG00000020524.16 ENSMUSG00000020524 ENSMUST00000173531 Gria1 protein_coding Interval_29921 chr11 87754848 87760684 + 0 NA promoter-TSS (ENSMUSG00000065420.2) miRNA-promoter-TSS (ENSMUSG00000065420.2) -811 ENSMUSG00000065420.2 ENSMUSG00000065420 ENSMUST00000083486 Mir142b miRNA Interval_155297 chr8 31038558 31039740 + 0 NA Intergenic Intergenic 35241 ENSMUSG00000109614.1 ENSMUSG00000109614 ENSMUST00000211579 Gm45252 processed_pseudogene Interval_132976 chr5 149051355 149053845 + 0 NA promoter-TSS (ENSMUSG00000066551.12) protein_coding-promoter-TSS (ENSMUSG00000066551.12) -36787 ENSMUSG00000085971.4 ENSMUSG00000085971 ENSMUST00000202128 Gm15411 processed_transcript Interval_100159 chr2 167389385 167390009 + 0 NA Intergenic Intergenic -61358 ENSMUSG00000039463.14 ENSMUSG00000039463 ENSMUST00000148454 Slc9a8 protein_coding Interval_3207 chr1 54832876 54833249 + 0 NA intron (ENSMUSG00000052331.14, intron 1 of 7) protein_coding-intron (ENSMUSG00000052331.14, intron 1 of 27) 63844 ENSMUSG00000089245.1 ENSMUSG00000089245 ENSMUST00000158620 Gm24053 miRNA Interval_28453 chr11 75999138 76000388 + 0 NA promoter-TSS (ENSMUSG00000053783.5) protein_coding-promoter-TSS (ENSMUSG00000053783.5) -149 ENSMUSG00000053783.5 ENSMUSG00000053783 ENSMUST00000066408 1700016K19Rik protein_coding Interval_171769 chr9 120914748 120915576 + 0 NA promoter-TSS (ENSMUSG00000100146.1) lincRNA-promoter-TSS (ENSMUSG00000100146.1) 90 ENSMUSG00000100146.1 ENSMUSG00000100146 ENSMUST00000188320 1700020M21Rik lincRNA Interval_155958 chr8 41280989 41281329 + 0 NA intron (ENSMUSG00000031592.10, intron 15 of 38) protein_coding-intron (ENSMUSG00000031592.10, intron 14 of 37) 41381 ENSMUSG00000031592.10 ENSMUSG00000031592 ENSMUST00000211247 Pcm1 protein_coding Interval_111572 chr4 23632456 23632809 + 0 NA Intergenic Intergenic -5887 ENSMUSG00000089323.1 ENSMUSG00000089323 ENSMUST00000158698 Gm25978 miRNA Interval_14311 chr10 30736977 30738064 + 0 NA intron (ENSMUSG00000039697.16, intron 1 of 13) protein_coding-intron (ENSMUSG00000039697.16, intron 2 of 15) 6442 ENSMUSG00000110894.1 ENSMUSG00000110894 ENSMUST00000215097 Gm48335 TEC Interval_48347 chr13 98397309 98397980 + 0 NA Intergenic Intergenic 5439 ENSMUSG00000098113.1 ENSMUSG00000098113 ENSMUST00000182798 Gm2445 processed_pseudogene Interval_133300 chr5 151368029 151369400 + 0 NA promoter-TSS (ENSMUSG00000097321.5) processed_transcript-promoter-TSS (ENSMUSG00000097321.5) -31430 ENSMUSG00000097321.5 ENSMUSG00000097321 ENSMUST00000201853 1700028E10Rik processed_transcript Interval_151427 chr7 122305918 122306268 + 0 NA intron (ENSMUSG00000052889.11, intron 2 of 17) protein_coding-intron (ENSMUSG00000052889.11, intron 2 of 16) -6971 ENSMUSG00000108752.1 ENSMUSG00000108752 ENSMUST00000205846 Gm45191 TEC Interval_16517 chr10 63316005 63316570 + 0 NA intron (ENSMUSG00000020064.9, intron 24 of 25) protein_coding-intron (ENSMUSG00000020064.9, intron 23 of 24) -20494 ENSMUSG00000096991.1 ENSMUSG00000096991 ENSMUST00000181342 Gm26789 antisense Interval_127963 chr5 109876271 109877324 + 0 NA Intergenic Intergenic -9434 ENSMUSG00000097140.1 ENSMUSG00000097140 ENSMUST00000181101 Gm26779 lincRNA Interval_95843 chr2 117194236 117195345 + 0 NA Intergenic Intergenic 9663 ENSMUSG00000076376.1 ENSMUSG00000076376 ENSMUST00000102421 Mir674 miRNA Interval_120338 chr4 147993665 147993990 + 0 NA Intergenic Intergenic -6895 ENSMUSG00000041616.9 ENSMUSG00000041616 ENSMUST00000103230 Nppa protein_coding Interval_94003 chr2 80616711 80617667 + 0 NA promoter-TSS (ENSMUSG00000027001.10) protein_coding-promoter-TSS (ENSMUSG00000027001.10) -77 ENSMUSG00000027001.10 ENSMUSG00000027001 ENSMUST00000151204 Dusp19 protein_coding Interval_149281 chr7 96913377 96914275 + 0 NA intron (ENSMUSG00000085560.2, intron 2 of 3) processed_transcript-intron (ENSMUSG00000085560.2, intron 2 of 3) 6276 ENSMUSG00000087980.1 ENSMUSG00000087980 ENSMUST00000157355 Gm22226 snRNA Interval_23264 chr11 21010370 21011226 + 0 NA Intergenic Intergenic -73097 ENSMUSG00000096061.1 ENSMUSG00000096061 ENSMUST00000178821 Gm23681 miRNA Interval_86174 chr19 37543530 37544650 + 0 NA intron (ENSMUSG00000053799.8, intron 2 of 22) protein_coding-intron (ENSMUSG00000053799.8, intron 2 of 22) 23211 ENSMUSG00000053799.8 ENSMUSG00000053799 ENSMUST00000238817 Exoc6 protein_coding Interval_130706 chr5 129914181 129914467 + 0 NA TTS (ENSMUSG00000095789.6) protein_coding-TTS (ENSMUSG00000095789.6) 5784 ENSMUSG00000095789.6 ENSMUSG00000095789 ENSMUST00000192787 Nupr1l protein_coding Interval_106875 chr3 101454415 101455525 + 0 NA intron (ENSMUSG00000042035.11, intron 8 of 10) protein_coding-intron (ENSMUSG00000042035.11, intron 8 of 10) -29317 ENSMUSG00000106137.1 ENSMUSG00000106137 ENSMUST00000196233 Gm42538 antisense Interval_170076 chr9 104254508 104255894 + 0 NA intron (ENSMUSG00000032560.14, intron 1 of 3) protein_coding-intron (ENSMUSG00000032560.14, intron 1 of 55) -6904 ENSMUSG00000104040.1 ENSMUSG00000104040 ENSMUST00000192580 Gm37563 TEC Interval_91715 chr2 48633505 48633691 + 0 NA Intergenic Intergenic -176353 ENSMUSG00000086353.1 ENSMUSG00000086353 ENSMUST00000127672 Gm13481 lincRNA Interval_159659 chr8 96229768 96231202 + 0 NA Intergenic Intergenic -79034 ENSMUSG00000110623.1 ENSMUSG00000110623 ENSMUST00000212446 Gm32005 lincRNA Interval_2648 chr1 42913526 42913959 + 0 NA Intergenic Intergenic 10685 ENSMUSG00000060679.14 ENSMUSG00000060679 ENSMUST00000202358 Mrps9 protein_coding Interval_91210 chr2 35932887 35933549 + 0 NA intron (ENSMUSG00000026885.13, intron 2 of 7) protein_coding-intron (ENSMUSG00000026885.13, intron 3 of 9) 19196 ENSMUSG00000026885.13 ENSMUSG00000026885 ENSMUST00000162172 Ttll11 protein_coding Interval_71105 chr17 18138366 18139435 + 0 NA Intergenic Intergenic -12987 ENSMUSG00000091350.2 ENSMUSG00000091350 ENSMUST00000169686 Vmn2r92 protein_coding Interval_86987 chr19 45356641 45357323 + 0 NA Intergenic Intergenic 6667 ENSMUSG00000114673.1 ENSMUSG00000114673 ENSMUST00000223748 1700016H03Rik antisense Interval_70478 chr17 10496463 10496845 + 0 NA intron (ENSMUSG00000089941.1, intron 1 of 1) protein_coding-intron (ENSMUSG00000037196.6, intron 4 of 4) 208 ENSMUSG00000089941.1 ENSMUSG00000089941 ENSMUST00000161091 Gm16168 antisense Interval_162591 chr9 5488438 5488724 + 0 NA Intergenic Intergenic 143105 ENSMUSG00000025887.10 ENSMUSG00000025887 ENSMUST00000151332 Casp12 protein_coding Interval_142384 chr6 141310101 141310513 + 0 NA intron (ENSMUSG00000041741.10, intron 1 of 5) protein_coding-intron (ENSMUSG00000041741.10, intron 1 of 15) -30246 ENSMUSG00000107456.1 ENSMUSG00000107456 ENSMUST00000203920 Gm10400 TEC Interval_64701 chr16 14305910 14306896 + 0 NA intron (ENSMUSG00000022677.15, intron 1 of 2) protein_coding-intron (ENSMUSG00000022677.15, intron 1 of 2) -5438 ENSMUSG00000085612.1 ENSMUSG00000085612 ENSMUST00000144291 Gm15868 antisense Interval_7250 chr1 128229021 128229387 + 0 NA intron (ENSMUSG00000056211.13, intron 4 of 7) protein_coding-intron (ENSMUSG00000056211.13, intron 23 of 26) -14760 ENSMUSG00000026353.9 ENSMUSG00000026353 ENSMUST00000189895 Ubxn4 protein_coding Interval_22340 chr11 8956985 8957272 + 0 NA intron (ENSMUSG00000046634.12, intron 6 of 49) protein_coding-intron (ENSMUSG00000046634.12, intron 6 of 49) -6589 ENSMUSG00000046634.12 ENSMUSG00000046634 ENSMUST00000155886 Pkd1l1 protein_coding Interval_31376 chr11 100323044 100323866 + 0 NA Intergenic Intergenic 2747 ENSMUSG00000035530.13 ENSMUSG00000035530 ENSMUST00000132618 Eif1 protein_coding Interval_101033 chr2 174403742 174404090 + 0 NA Intergenic Intergenic -19476 ENSMUSG00000016253.12 ENSMUSG00000016253 ENSMUST00000137986 Nelfcd protein_coding Interval_7181 chr1 127514265 127514982 + 0 NA intron (ENSMUSG00000026347.13, intron 5 of 7) protein_coding-intron (ENSMUSG00000026347.13, intron 5 of 8) 107847 ENSMUSG00000103390.1 ENSMUSG00000103390 ENSMUST00000195573 Gm38301 TEC Interval_3236 chr1 55052165 55053424 + 0 NA promoter-TSS (ENSMUSG00000025981.13) protein_coding-promoter-TSS (ENSMUSG00000025981.13) 318 ENSMUSG00000103030.1 ENSMUSG00000103030 ENSMUST00000193614 E330011M16Rik TEC Interval_32245 chr11 106453523 106453850 + 0 NA intron (ENSMUSG00000020715.9, intron 2 of 10) protein_coding-intron (ENSMUSG00000020715.9, intron 2 of 21) 34166 ENSMUSG00000020715.9 ENSMUSG00000020715 ENSMUST00000106799 Ern1 protein_coding Interval_127150 chr5 100648256 100648717 + 0 NA Intergenic Intergenic 15933 ENSMUSG00000029319.8 ENSMUSG00000029319 ENSMUST00000127811 Coq2 protein_coding Interval_167207 chr9 66180963 66182044 + 0 NA intron (ENSMUSG00000032380.9, intron 2 of 9) protein_coding-intron (ENSMUSG00000032380.9, intron 2 of 11) 23277 ENSMUSG00000032380.9 ENSMUSG00000032380 ENSMUST00000129778 Dapk2 protein_coding Interval_5943 chr1 93379896 93380769 + 0 NA intron (ENSMUSG00000034107.10, intron 3 of 23) protein_coding-intron (ENSMUSG00000034107.10, intron 3 of 23) 17077 ENSMUSG00000064389.1 ENSMUSG00000064389 ENSMUST00000082455 Gm26446 snRNA Interval_73307 chr17 36114255 36114481 + 0 NA intron (ENSMUSG00000092365.2, intron 1 of 1) protein_coding-intron (ENSMUSG00000092243.8, intron 4 of 4) -2710 ENSMUSG00000073405.6 ENSMUSG00000073405 ENSMUST00000172538 H2-T-ps unprocessed_pseudogene Interval_22735 chr11 14159324 14160073 + 0 NA intron (ENSMUSG00000085452.1, intron 1 of 3) lincRNA-intron (ENSMUSG00000085452.1, intron 1 of 3) -2381 ENSMUSG00000081631.1 ENSMUSG00000081631 ENSMUST00000121451 Gm12005 processed_pseudogene Interval_146939 chr7 56042305 56043120 + 0 NA intron (ENSMUSG00000108659.1, intron 1 of 2) processed_transcript-intron (ENSMUSG00000108659.1, intron 1 of 2) 7227 ENSMUSG00000108659.1 ENSMUSG00000108659 ENSMUST00000206544 Gm34121 processed_transcript Interval_141585 chr6 129680359 129680646 + 0 NA Intergenic Intergenic -1574 ENSMUSG00000030167.15 ENSMUSG00000030167 ENSMUST00000118447 Klrc1 protein_coding Interval_92998 chr2 69427404 69428428 + 0 NA intron (ENSMUSG00000027070.14, intron 77 of 78) protein_coding-intron (ENSMUSG00000027070.14, intron 77 of 78) 47471 ENSMUSG00000027068.6 ENSMUSG00000027068 ENSMUST00000063690 Dhrs9 protein_coding Interval_146450 chr7 46009755 46010007 + 0 NA intron (ENSMUSG00000030834.7, intron 10 of 30) protein_coding-intron (ENSMUSG00000030834.7, intron 10 of 30) -8812 ENSMUSG00000030834.7 ENSMUSG00000030834 ENSMUST00000211780 Abcc6 protein_coding Interval_172337 chrX 13141217 13141435 + 0 NA intron (ENSMUSG00000031010.17, intron 28 of 44) protein_coding-intron (ENSMUSG00000031010.17, intron 28 of 44) 12266 ENSMUSG00000031010.17 ENSMUSG00000031010 ENSMUST00000133997 Usp9x protein_coding Interval_124491 chr5 49027918 49028724 + 0 NA intron (ENSMUSG00000029088.16, intron 1 of 8) protein_coding-intron (ENSMUSG00000029088.16, intron 1 of 8) -5983 ENSMUSG00000104929.1 ENSMUSG00000104929 ENSMUST00000200233 Gm42766 TEC Interval_103432 chr3 41527257 41528934 + 0 NA intron (ENSMUSG00000106223.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000106223.1, intron 1 of 2) 379 ENSMUSG00000106223.1 ENSMUSG00000106223 ENSMUST00000197509 2400006E01Rik lincRNA Interval_153559 chr8 3414412 3415252 + 0 NA intron (ENSMUSG00000004568.13, intron 1 of 3) protein_coding-intron (ENSMUSG00000004568.13, intron 1 of 19) -43207 ENSMUSG00000108955.1 ENSMUSG00000108955 ENSMUST00000207266 Gm44775 TEC Interval_172931 chrX 56467212 56468138 + 0 NA intron (ENSMUSG00000035967.15, intron 2 of 17) protein_coding-intron (ENSMUSG00000035967.15, intron 2 of 16) 12790 ENSMUSG00000035967.15 ENSMUSG00000035967 ENSMUST00000142624 Ints6l protein_coding Interval_135799 chr6 47432037 47433269 + 0 NA exon (ENSMUSG00000107853.1, exon 1 of 1) processed_pseudogene-exon (ENSMUSG00000107853.1, exon 1 of 1) 436 ENSMUSG00000107853.1 ENSMUSG00000107853 ENSMUST00000203098 Gm18584 processed_pseudogene Interval_164683 chr9 40569465 40569742 + 0 NA Intergenic Intergenic -8674 ENSMUSG00000111858.1 ENSMUSG00000111858 ENSMUST00000214616 Gm48277 lincRNA Interval_127206 chr5 101312101 101312913 + 0 NA Intergenic Intergenic 6929 ENSMUSG00000105965.1 ENSMUSG00000105965 ENSMUST00000197114 Cycs-ps2 processed_pseudogene Interval_174859 chrY 1220990 1221311 + 0 NA intron (ENSMUSG00000068457.14, intron 3 of 24) protein_coding-intron (ENSMUSG00000068457.14, intron 4 of 26) 47735 ENSMUSG00000101059.1 ENSMUSG00000101059 ENSMUST00000084813 Gm4017 processed_pseudogene Interval_135160 chr6 37057870 37058313 + 0 NA intron (ENSMUSG00000038665.15, intron 8 of 32) protein_coding-intron (ENSMUSG00000038665.15, intron 8 of 32) 101241 ENSMUSG00000107310.1 ENSMUSG00000107310 ENSMUST00000202891 Gm7452 transcribed_processed_pseudogene Interval_166947 chr9 64087425 64089107 + 0 NA Intergenic Intergenic 7505 ENSMUSG00000093759.1 ENSMUSG00000093759 ENSMUST00000176950 Scarletltr processed_transcript Interval_38772 chr12 82217630 82217951 + 0 NA intron (ENSMUSG00000042700.16, intron 2 of 3) protein_coding-intron (ENSMUSG00000042700.16, intron 1 of 22) 48314 ENSMUSG00000042700.16 ENSMUSG00000042700 ENSMUST00000221327 Sipa1l1 protein_coding Interval_173353 chrX 82982274 82982499 + 0 NA intron (ENSMUSG00000045103.19, intron 1 of 6) protein_coding-intron (ENSMUSG00000045103.19, intron 1 of 78) -84887 ENSMUSG00000088097.1 ENSMUSG00000088097 ENSMUST00000157472 Gm23671 misc_RNA Interval_92585 chr2 60880571 60881890 + 0 NA exon (ENSMUSG00000026970.16, exon 1 of 15) protein_coding-exon (ENSMUSG00000026970.16, exon 1 of 15) 208 ENSMUSG00000026970.16 ENSMUSG00000026970 ENSMUST00000128866 Rbms1 protein_coding Interval_113510 chr4 55430396 55432339 + 0 NA Intergenic Intergenic -12525 ENSMUSG00000087070.1 ENSMUSG00000087070 ENSMUST00000146041 Gm12505 lincRNA Interval_44610 chr13 46695082 46695856 + 0 NA intron (ENSMUSG00000021374.10, intron 1 of 1) protein_coding-intron (ENSMUSG00000021374.10, intron 15 of 21) 12348 ENSMUSG00000021374.10 ENSMUSG00000021374 ENSMUST00000183299 Nup153 protein_coding Interval_32672 chr11 109562663 109563265 + 0 NA intron (ENSMUSG00000020604.13, intron 10 of 11) protein_coding-intron (ENSMUSG00000020604.13, intron 12 of 13) 49003 ENSMUSG00000041895.15 ENSMUSG00000041895 ENSMUST00000153738 Wipi1 protein_coding Interval_39824 chr12 98746072 98747659 + 0 NA promoter-TSS (ENSMUSG00000021012.16) protein_coding-promoter-TSS (ENSMUSG00000021012.16) -12978 ENSMUSG00000021012.16 ENSMUSG00000021012 ENSMUST00000220660 Zc3h14 protein_coding Interval_10409 chr1 170531760 170532042 + 0 NA intron (ENSMUSG00000038473.14, intron 1 of 7) protein_coding-intron (ENSMUSG00000038473.14, intron 1 of 3) -99020 ENSMUSG00000102193.1 ENSMUSG00000102193 ENSMUST00000194441 Gm7299 processed_pseudogene Interval_73450 chr17 37356811 37357228 + 0 NA Intergenic Intergenic -2563 ENSMUSG00000095858.4 ENSMUSG00000095858 ENSMUST00000215398 Olfr104-ps protein_coding Interval_174453 chrX 152652609 152653400 + 0 NA intron (ENSMUSG00000045180.13, intron 3 of 7) protein_coding-intron (ENSMUSG00000045180.13, intron 5 of 9) 20236 ENSMUSG00000045180.13 ENSMUSG00000045180 ENSMUST00000141677 Shroom2 protein_coding Interval_48250 chr13 97442325 97442875 + 0 NA intron (ENSMUSG00000078952.9, intron 1 of 1) lincRNA-intron (ENSMUSG00000078952.9, intron 1 of 1) 16477 ENSMUSG00000098238.1 ENSMUSG00000098238 ENSMUST00000183250 Gm8756 processed_pseudogene Interval_130209 chr5 124952531 124952889 + 0 NA Intergenic Intergenic -50765 ENSMUSG00000037962.7 ENSMUSG00000037962 ENSMUST00000145946 Rflna protein_coding Interval_50798 chr14 19916231 19916655 + 0 NA intron (ENSMUSG00000043004.13, intron 1 of 2) protein_coding-intron (ENSMUSG00000043004.13, intron 4 of 5) 49463 ENSMUSG00000114436.1 ENSMUSG00000114436 ENSMUST00000224546 Gm48283 lincRNA Interval_57090 chr15 6030105 6031582 + 0 NA Intergenic Intergenic -4118 ENSMUSG00000115093.1 ENSMUSG00000115093 ENSMUST00000227373 Gm8047 processed_pseudogene Interval_61498 chr15 81993442 81994011 + 0 NA TTS (ENSMUSG00000022472.16) protein_coding-TTS (ENSMUSG00000022472.16) 13186 ENSMUSG00000061633.3 ENSMUSG00000061633 ENSMUST00000074608 1700029P11Rik protein_coding Interval_59200 chr15 47869227 47869844 + 0 NA intron (ENSMUSG00000022311.15, intron 27 of 70) protein_coding-intron (ENSMUSG00000022311.15, intron 27 of 70) 68862 ENSMUSG00000077752.1 ENSMUSG00000077752 ENSMUST00000104564 Gm23530 snoRNA Interval_76388 chr17 79825619 79827113 + 0 NA promoter-TSS (ENSMUSG00000103091.1) TEC-promoter-TSS (ENSMUSG00000103091.1) 507 ENSMUSG00000117561.1 ENSMUSG00000117561 ENSMUST00000234471 Gm49985 lincRNA Interval_92890 chr2 68220906 68221596 + 0 NA intron (ENSMUSG00000027030.15, intron 1 of 2) protein_coding-intron (ENSMUSG00000027030.15, intron 16 of 17) 139460 ENSMUSG00000081257.1 ENSMUSG00000081257 ENSMUST00000117875 Gm13607 processed_pseudogene Interval_54932 chr14 76323614 76324111 + 0 NA Intergenic Intergenic 72405 ENSMUSG00000115625.1 ENSMUSG00000115625 ENSMUST00000227933 2900040C04Rik lincRNA Interval_122511 chr5 23497888 23498216 + 0 NA promoter-TSS (ENSMUSG00000029004.15) protein_coding-promoter-TSS (ENSMUSG00000029004.15) -10329 ENSMUSG00000088170.1 ENSMUSG00000088170 ENSMUST00000157545 Gm25219 misc_RNA Interval_13227 chr10 13247740 13247966 + 0 NA intron (ENSMUSG00000062866.16, intron 6 of 12) protein_coding-intron (ENSMUSG00000062866.16, intron 6 of 12) 42627 ENSMUSG00000112042.1 ENSMUSG00000112042 ENSMUST00000219030 Gm47402 processed_pseudogene Interval_164100 chr9 31474973 31475863 + 0 NA intron (ENSMUSG00000111655.1, intron 1 of 1) bidirectional_promoter_lncRNA-intron (ENSMUSG00000111655.1, intron 1 of 1) -11217 ENSMUSG00000041737.8 ENSMUSG00000041737 ENSMUST00000216875 Tmem45b protein_coding Interval_537 chr1 7070020 7070527 + 0 NA Intergenic Intergenic 34358 ENSMUSG00000103629.1 ENSMUSG00000103629 ENSMUST00000195648 Gm5694 processed_pseudogene Interval_139566 chr6 101260441 101262344 + 0 NA intron (ENSMUSG00000035357.17, intron 3 of 3) protein_coding-intron (ENSMUSG00000035357.17, intron 3 of 9) 27118 ENSMUSG00000108076.1 ENSMUSG00000108076 ENSMUST00000203503 9530086O07Rik TEC Interval_55505 chr14 89519294 89519579 + 0 NA Intergenic Intergenic 126360 ENSMUSG00000088405.1 ENSMUSG00000088405 ENSMUST00000157780 Gm25886 snRNA Interval_157807 chr8 73563679 73563957 + 0 NA Intergenic Intergenic 77687 ENSMUSG00000076199.1 ENSMUSG00000076199 ENSMUST00000102244 Gm23255 miRNA Interval_11424 chr1 181865144 181866921 + 0 NA Intergenic Intergenic -12843 ENSMUSG00000056699.7 ENSMUSG00000056699 ENSMUST00000070987 Gm5533 lincRNA Interval_126643 chr5 91554029 91554301 + 0 NA intron (ENSMUSG00000034981.9, intron 1 of 3) protein_coding-intron (ENSMUSG00000034981.9, intron 1 of 3) 36550 ENSMUSG00000034981.9 ENSMUSG00000034981 ENSMUST00000040576 Parm1 protein_coding Interval_30416 chr11 94242863 94244136 + 0 NA promoter-TSS (ENSMUSG00000044177.4) protein_coding-promoter-TSS (ENSMUSG00000044177.4) 2506 ENSMUSG00000044177.4 ENSMUSG00000044177 ENSMUST00000131352 Wfikkn2 protein_coding Interval_89958 chr2 26847646 26848335 + 0 NA intron (ENSMUSG00000015787.15, intron 3 of 5) protein_coding-intron (ENSMUSG00000015787.15, intron 3 of 5) 8808 ENSMUSG00000015787.15 ENSMUSG00000015787 ENSMUST00000102900 Abo protein_coding Interval_106448 chr3 96413862 96414947 + 0 NA TTS (ENSMUSG00000064796.1) misc_RNA-TTS (ENSMUSG00000064796.1) 429 ENSMUSG00000118406.1 ENSMUSG00000118406 ENSMUST00000238714 Terc lincRNA Interval_151383 chr7 121986204 121986466 + 0 NA TTS (ENSMUSG00000030872.14) protein_coding-TTS (ENSMUSG00000030872.14) 4574 ENSMUSG00000108511.1 ENSMUSG00000108511 ENSMUST00000206578 Gm44987 antisense Interval_152866 chr7 138907018 138907391 + 0 NA intron (ENSMUSG00000078566.8, intron 1 of 1) protein_coding-intron (ENSMUSG00000078566.8, intron 1 of 5) 2315 ENSMUSG00000078566.8 ENSMUSG00000078566 ENSMUST00000125359 Bnip3 protein_coding Interval_48433 chr13 98983936 98984245 + 0 NA TTS (ENSMUSG00000045022.6) protein_coding-TTS (ENSMUSG00000045022.6) 475 ENSMUSG00000045022.6 ENSMUSG00000045022 ENSMUST00000054425 H2bl1 protein_coding Interval_99952 chr2 166065372 166067389 + 0 NA TTS (ENSMUSG00000027678.17) protein_coding-TTS (ENSMUSG00000027678.17) 18462 ENSMUSG00000027678.17 ENSMUSG00000027678 ENSMUST00000139394 Ncoa3 protein_coding Interval_28691 chr11 77771850 77772702 + 0 NA intron (ENSMUSG00000000631.20, intron 1 of 40) protein_coding-intron (ENSMUSG00000000631.20, intron 1 of 1) 15471 ENSMUSG00000069804.2 ENSMUSG00000069804 ENSMUST00000092883 Gm10277 protein_coding Interval_172876 chrX 52679196 52679489 + 0 NA Intergenic Intergenic 62425 ENSMUSG00000070106.1 ENSMUSG00000070106 ENSMUST00000093598 Mir363 miRNA Interval_88116 chr19 59344795 59346495 + 0 NA exon (ENSMUSG00000074746.3, exon 1 of 5) protein_coding-exon (ENSMUSG00000074746.3, exon 1 of 5) 135 ENSMUSG00000074746.3 ENSMUSG00000074746 ENSMUST00000099274 Pdzd8 protein_coding Interval_105503 chr3 87101464 87102707 + 0 NA intron (ENSMUSG00000041734.15, intron 2 of 15) protein_coding-intron (ENSMUSG00000041734.15, intron 2 of 13) 35192 ENSMUSG00000077672.1 ENSMUSG00000077672 ENSMUST00000104484 Gm24472 snoRNA Interval_161932 chr8 123846197 123847217 + 0 NA intron (ENSMUSG00000031971.15, intron 2 of 3) protein_coding-intron (ENSMUSG00000031971.15, intron 1 of 2) -5922 ENSMUSG00000085030.1 ENSMUSG00000085030 ENSMUST00000138442 2810455O05Rik lincRNA Interval_16608 chr10 65216137 65217013 + 0 NA Intergenic Intergenic -96208 ENSMUSG00000100528.1 ENSMUSG00000100528 ENSMUST00000187710 Gm28881 lincRNA Interval_37062 chr12 57226453 57226901 + 0 NA Intergenic Intergenic -3735 ENSMUSG00000079104.4 ENSMUSG00000079104 ENSMUST00000139049 Prps1l3 protein_coding Interval_56637 chr14 121044236 121045177 + 0 NA intron (ENSMUSG00000025555.14, intron 1 of 26) protein_coding-intron (ENSMUSG00000025555.14, intron 1 of 26) -57373 ENSMUSG00000025555.14 ENSMUSG00000025555 ENSMUST00000137971 Farp1 protein_coding Interval_43825 chr13 37425130 37426192 + 0 NA intron (ENSMUSG00000100760.1, intron 2 of 2) lincRNA-intron (ENSMUSG00000100760.1, intron 2 of 2) 9488 ENSMUSG00000100760.1 ENSMUSG00000100760 ENSMUST00000190684 Gm4035 lincRNA Interval_116762 chr4 117146129 117146617 + 0 NA intron (ENSMUSG00000033872.6, intron 3 of 8) unitary_pseudogene-intron (ENSMUSG00000033872.6, intron 3 of 8) 1116 ENSMUSG00000033872.6 ENSMUSG00000033872 ENSMUST00000129783 Best4-ps unitary_pseudogene Interval_92921 chr2 68568717 68569107 + 0 NA promoter-TSS (ENSMUSG00000116244.1) transcribed_unprocessed_pseudogene-promoter-TSS (ENSMUSG00000116244.1) 68 ENSMUSG00000116244.1 ENSMUSG00000116244 ENSMUST00000230049 Gm49461 transcribed_unprocessed_pseudogene Interval_27360 chr11 66966385 66967329 + 0 NA Intergenic Intergenic 10219 ENSMUSG00000085683.2 ENSMUSG00000085683 ENSMUST00000127166 Tmem238l protein_coding Interval_68222 chr16 69414381 69414861 + 0 NA Intergenic Intergenic 385760 ENSMUSG00000107073.1 ENSMUSG00000107073 ENSMUST00000201886 4930428D20Rik lincRNA Interval_76724 chr17 83698775 83700378 + 0 NA Intergenic Intergenic -29588 ENSMUSG00000055817.18 ENSMUSG00000055817 ENSMUST00000175920 Mta3 protein_coding Interval_57404 chr15 10606628 10607009 + 0 NA exon (ENSMUSG00000115667.1, exon 3 of 3) antisense-exon (ENSMUSG00000115667.1, exon 3 of 3) 6481 ENSMUSG00000115667.1 ENSMUSG00000115667 ENSMUST00000228059 Gm10389 antisense Interval_70683 chr17 13004579 13005291 + 0 NA Intergenic Intergenic -10766 ENSMUSG00000060475.13 ENSMUSG00000060475 ENSMUST00000233467 Wtap protein_coding Interval_68900 chr16 88204193 88204823 + 0 NA intron (ENSMUSG00000022935.16, intron 1 of 16) protein_coding-intron (ENSMUSG00000022935.16, intron 1 of 15) 85356 ENSMUSG00000022935.16 ENSMUSG00000022935 ENSMUST00000210910 Grik1 protein_coding Interval_41569 chr12 116404124 116405943 + 0 NA promoter-TSS (ENSMUSG00000042029.7) protein_coding-promoter-TSS (ENSMUSG00000042029.7) 177 ENSMUSG00000112980.1 ENSMUSG00000112980 ENSMUST00000220477 D430020J02Rik bidirectional_promoter_lncRNA Interval_108578 chr3 129254213 129254446 + 0 NA Intergenic Intergenic -28801 ENSMUSG00000106078.1 ENSMUSG00000106078 ENSMUST00000199637 Gm43697 TEC Interval_64800 chr16 15902061 15902547 + 0 NA intron (ENSMUSG00000041974.10, intron 16 of 16) protein_coding-intron (ENSMUSG00000041974.10, intron 16 of 19) 13888 ENSMUSG00000071637.5 ENSMUSG00000071637 ENSMUST00000210772 Cebpd protein_coding Interval_109626 chr3 145463082 145463316 + 0 NA intron (ENSMUSG00000028197.4, intron 37 of 59) protein_coding-intron (ENSMUSG00000028197.4, intron 37 of 59) 43873 ENSMUSG00000105959.1 ENSMUSG00000105959 ENSMUST00000199255 D530037P16Rik sense_overlapping Interval_82649 chr18 75615968 75616374 + 0 NA intron (ENSMUSG00000052928.9, intron 3 of 11) protein_coding-intron (ENSMUSG00000052928.9, intron 3 of 11) 21102 ENSMUSG00000052928.9 ENSMUSG00000052928 ENSMUST00000235147 Ctif protein_coding Interval_56148 chr14 107314273 107315719 + 0 NA Intergenic Intergenic 211248 ENSMUSG00000115510.1 ENSMUSG00000115510 ENSMUST00000227311 Gm9334 processed_pseudogene Interval_102808 chr3 31211695 31212984 + 0 NA intron (ENSMUSG00000069072.9, intron 7 of 7) protein_coding-intron (ENSMUSG00000069072.9, intron 7 of 7) 46055 ENSMUSG00000069072.9 ENSMUSG00000069072 ENSMUST00000108245 Slc7a14 protein_coding Interval_140678 chr6 120500590 120500804 + 0 NA Intergenic Intergenic -6890 ENSMUSG00000094626.1 ENSMUSG00000094626 ENSMUST00000178687 Tmem121b protein_coding Interval_150188 chr7 107742974 107743348 + 0 NA intron (ENSMUSG00000036528.16, intron 1 of 2) protein_coding-intron (ENSMUSG00000036528.16, intron 24 of 24) 14835 ENSMUSG00000048065.8 ENSMUSG00000048065 ENSMUST00000208217 Cyb5r2 protein_coding Interval_33253 chr11 115484997 115485909 + 0 NA TTS (ENSMUSG00000057219.11) protein_coding-TTS (ENSMUSG00000057219.11) 5918 ENSMUSG00000020736.12 ENSMUSG00000020736 ENSMUST00000130668 Nt5c protein_coding Interval_82736 chr18 76306555 76306795 + 0 NA exon (ENSMUSG00000024563.16, exon 11 of 11) protein_coding-exon (ENSMUSG00000024563.16, exon 11 of 11) -15149 ENSMUSG00000117816.1 ENSMUSG00000117816 ENSMUST00000235901 Gm50360 processed_pseudogene Interval_31559 chr11 101356381 101356736 + 0 NA Intergenic Intergenic -3013 ENSMUSG00000082478.1 ENSMUSG00000082478 ENSMUST00000117474 Gm11619 processed_pseudogene Interval_118299 chr4 130138324 130139424 + 0 NA promoter-TSS (ENSMUSG00000028778.15) protein_coding-promoter-TSS (ENSMUSG00000028778.15) -1246 ENSMUSG00000028778.15 ENSMUSG00000028778 ENSMUST00000164887 Hcrtr1 protein_coding Interval_87025 chr19 45612060 45612794 + 0 NA intron (ENSMUSG00000040913.11, intron 1 of 1) protein_coding-intron (ENSMUSG00000040913.11, intron 5 of 8) -20585 ENSMUSG00000040913.11 ENSMUSG00000040913 ENSMUST00000159590 Fbxw4 protein_coding Interval_59703 chr15 58734448 58734790 + 0 NA Intergenic Intergenic 47332 ENSMUSG00000093677.1 ENSMUSG00000093677 ENSMUST00000176387 Gm20712 sense_overlapping Interval_125896 chr5 75511169 75511472 + 0 NA Intergenic Intergenic 49830 ENSMUSG00000089078.1 ENSMUSG00000089078 ENSMUST00000158453 Gm24502 snRNA Interval_35787 chr12 29640742 29641208 + 0 NA intron (ENSMUSG00000061911.15, intron 2 of 4) protein_coding-intron (ENSMUSG00000061911.15, intron 2 of 24) 45470 ENSMUSG00000112663.1 ENSMUSG00000112663 ENSMUST00000218114 C630031E19Rik antisense Interval_66111 chr16 31672188 31672525 + 0 NA intron (ENSMUSG00000022770.17, intron 3 of 24) protein_coding-intron (ENSMUSG00000022770.17, intron 3 of 24) -6885 ENSMUSG00000116781.1 ENSMUSG00000116781 ENSMUST00000232316 Gm49712 TEC Interval_131450 chr5 137305678 137308834 + 0 NA exon (ENSMUSG00000037364.12, exon 1 of 19) protein_coding-exon (ENSMUSG00000037364.12, exon 1 of 19) -2140 ENSMUSG00000106058.1 ENSMUSG00000106058 ENSMUST00000198216 Gm43013 processed_pseudogene Interval_162119 chr8 125314870 125316017 + 0 NA Intergenic Intergenic -88120 ENSMUSG00000086694.1 ENSMUSG00000086694 ENSMUST00000156666 Gm16237 antisense Interval_28219 chr11 74453754 74454412 + 0 NA intron (ENSMUSG00000038807.19, intron 4 of 25) protein_coding-intron (ENSMUSG00000038807.19, intron 4 of 25) 92014 ENSMUSG00000058275.3 ENSMUSG00000058275 ENSMUST00000077794 Olfr412 protein_coding Interval_137940 chr6 83555071 83555450 + 0 NA intron (ENSMUSG00000006906.10, intron 7 of 9) protein_coding-intron (ENSMUSG00000006906.10, intron 7 of 9) -5008 ENSMUSG00000108484.1 ENSMUSG00000108484 ENSMUST00000206792 Gm18537 transcribed_processed_pseudogene Interval_81483 chr18 61045038 61045404 + 0 NA promoter-TSS (ENSMUSG00000024620.11) protein_coding-promoter-TSS (ENSMUSG00000024620.11) 21 ENSMUSG00000024620.11 ENSMUSG00000024620 ENSMUST00000115274 Pdgfrb protein_coding Interval_83554 chr18 89308045 89308276 + 0 NA intron (ENSMUSG00000073514.4, intron 7 of 7) protein_coding-intron (ENSMUSG00000073514.4, intron 7 of 7) 71457 ENSMUSG00000118274.1 ENSMUSG00000118274 ENSMUST00000236207 Gm50204 processed_pseudogene Interval_16296 chr10 62031878 62032500 + 0 NA Intergenic Intergenic 8785 ENSMUSG00000112018.1 ENSMUSG00000112018 ENSMUST00000220135 Gm47919 TEC Interval_79083 chr18 24409219 24411317 + 0 NA Intergenic Intergenic 18902 ENSMUSG00000065532.1 ENSMUSG00000065532 ENSMUST00000083598 Mir187 miRNA Interval_43218 chr13 25481679 25482665 + 0 NA Intergenic Intergenic 26450 ENSMUSG00000083919.1 ENSMUSG00000083919 ENSMUST00000120382 Tpi-rs8 processed_pseudogene Interval_112365 chr4 40845207 40845897 + 0 NA intron (ENSMUSG00000028413.13, intron 1 of 4) protein_coding-intron (ENSMUSG00000028413.13, intron 1 of 5) 4586 ENSMUSG00000096377.1 ENSMUSG00000096377 ENSMUST00000177794 Mir5123 miRNA Interval_61940 chr15 85366064 85366313 + 0 NA intron (ENSMUSG00000016541.10, intron 3 of 11) protein_coding-intron (ENSMUSG00000016541.10, intron 3 of 11) -14934 ENSMUSG00000064764.1 ENSMUSG00000064764 ENSMUST00000082830 Gm23517 snRNA Interval_118169 chr4 129334812 129336225 + 0 NA promoter-TSS (ENSMUSG00000057236.10) protein_coding-promoter-TSS (ENSMUSG00000057236.10) -177 ENSMUSG00000057572.15 ENSMUSG00000057572 ENSMUST00000140272 Zbtb8os protein_coding Interval_107741 chr3 112491665 112491861 + 0 NA Intergenic Intergenic -99800 ENSMUSG00000105785.1 ENSMUSG00000105785 ENSMUST00000198956 Gm42526 processed_pseudogene Interval_41039 chr12 110759903 110760504 + 0 NA intron (ENSMUSG00000037957.14, intron 1 of 4) protein_coding-intron (ENSMUSG00000037957.14, intron 1 of 2) 21994 ENSMUSG00000037957.14 ENSMUSG00000037957 ENSMUST00000194118 Wdr20 protein_coding Interval_106364 chr3 95658263 95659724 + 0 NA exon (ENSMUSG00000038612.16, exon 1 of 3) protein_coding-exon (ENSMUSG00000038612.16, exon 1 of 3) 136 ENSMUSG00000038612.16 ENSMUSG00000038612 ENSMUST00000178686 Mcl1 protein_coding Interval_73376 chr17 36860610 36861569 + 0 NA TTS (ENSMUSG00000050747.14) protein_coding-TTS (ENSMUSG00000050747.14) 6121 ENSMUSG00000050747.14 ENSMUSG00000050747 ENSMUST00000173639 Trim15 protein_coding Interval_25929 chr11 52676502 52676880 + 0 NA Intergenic Intergenic -87943 ENSMUSG00000036264.9 ENSMUSG00000036264 ENSMUST00000036796 Fstl4 protein_coding Interval_161901 chr8 123645392 123645833 + 0 NA intron (ENSMUSG00000092329.1, intron 1 of 15) protein_coding-intron (ENSMUSG00000092329.1, intron 1 of 15) -8317 ENSMUSG00000039960.5 ENSMUSG00000039960 ENSMUST00000045487 Rhou protein_coding Interval_122937 chr5 27615239 27616397 + 0 NA intron (ENSMUSG00000061576.15, intron 4 of 12) protein_coding-intron (ENSMUSG00000061576.15, intron 8 of 25) -61943 ENSMUSG00000086505.1 ENSMUSG00000086505 ENSMUST00000124392 Gm16058 antisense Interval_92107 chr2 53234301 53234773 + 0 NA Intergenic Intergenic 40304 ENSMUSG00000088928.1 ENSMUSG00000088928 ENSMUST00000158303 Gm25898 snRNA Interval_42066 chr13 7200838 7201036 + 0 NA Intergenic Intergenic -36602 ENSMUSG00000113241.1 ENSMUSG00000113241 ENSMUST00000221816 Gm40663 lincRNA Interval_54566 chr14 70706803 70707095 + 0 NA intron (ENSMUSG00000022100.14, intron 2 of 27) protein_coding-intron (ENSMUSG00000022100.14, intron 2 of 27) 1086 ENSMUSG00000022100.14 ENSMUSG00000022100 ENSMUST00000227550 Xpo7 protein_coding Interval_87771 chr19 55754050 55754772 + 0 NA intron (ENSMUSG00000024985.20, intron 1 of 3) protein_coding-intron (ENSMUSG00000024985.20, intron 3 of 11) 12147 ENSMUSG00000024985.20 ENSMUSG00000024985 ENSMUST00000148666 Tcf7l2 protein_coding Interval_145988 chr7 42873815 42874076 + 0 NA Intergenic Intergenic -4651 ENSMUSG00000092191.1 ENSMUSG00000092191 ENSMUST00000172692 Gm7211 processed_pseudogene Interval_171200 chr9 115147350 115148454 + 0 NA intron (ENSMUSG00000040875.12, intron 1 of 4) protein_coding-intron (ENSMUSG00000040875.12, intron 2 of 9) 38156 ENSMUSG00000098127.1 ENSMUSG00000098127 ENSMUST00000183244 Gm4665 antisense Interval_114743 chr4 84674069 84676053 + 0 NA promoter-TSS (ENSMUSG00000028487.18) protein_coding-promoter-TSS (ENSMUSG00000028487.18) -22802 ENSMUSG00000081775.1 ENSMUSG00000081775 ENSMUST00000119869 Gm12420 processed_pseudogene Interval_45281 chr13 53934581 53934966 + 0 NA promoter-TSS (ENSMUSG00000113982.1) lincRNA-promoter-TSS (ENSMUSG00000113982.1) 15 ENSMUSG00000113982.1 ENSMUSG00000113982 ENSMUST00000223115 Gm34557 lincRNA Interval_22829 chr11 16430717 16430947 + 0 NA Intergenic Intergenic -8422 ENSMUSG00000083925.1 ENSMUSG00000083925 ENSMUST00000118857 Gm12012 processed_pseudogene Interval_129006 chr5 116591400 116593476 + 0 NA promoter-TSS (ENSMUSG00000063919.11) protein_coding-promoter-TSS (ENSMUSG00000063919.11) -18943 ENSMUSG00000106914.1 ENSMUSG00000106914 ENSMUST00000201262 Gm42854 sense_intronic Interval_62233 chr15 89044268 89044950 + 0 NA intron (ENSMUSG00000015365.15, intron 22 of 26) protein_coding-intron (ENSMUSG00000015365.15, intron 22 of 26) -15138 ENSMUSG00000058441.7 ENSMUSG00000058441 ENSMUST00000159960 Panx2 protein_coding Interval_104933 chr3 79126675 79126979 + 0 NA intron (ENSMUSG00000062232.14, intron 7 of 29) protein_coding-intron (ENSMUSG00000062232.14, intron 1 of 23) -69547 ENSMUSG00000064693.1 ENSMUSG00000064693 ENSMUST00000082759 Gm24150 snRNA Interval_149497 chr7 99125804 99128655 + 0 NA intron (ENSMUSG00000035354.9, intron 1 of 11) protein_coding-intron (ENSMUSG00000035354.9, intron 1 of 14) -3770 ENSMUSG00000109073.1 ENSMUSG00000109073 ENSMUST00000207435 Gm44975 TEC Interval_25047 chr11 43495123 43497060 + 0 NA Intergenic Intergenic 21815 ENSMUSG00000046491.10 ENSMUSG00000046491 ENSMUST00000151912 C1qtnf2 protein_coding Interval_90537 chr2 31024556 31026127 + 0 NA TTS (ENSMUSG00000075415.13) protein_coding-TTS (ENSMUSG00000075415.13) 43007 ENSMUSG00000026854.16 ENSMUSG00000026854 ENSMUST00000127776 Usp20 protein_coding Interval_57893 chr15 25046575 25046871 + 0 NA Intergenic Intergenic -28329 ENSMUSG00000097452.2 ENSMUSG00000097452 ENSMUST00000226189 Gm2824 lincRNA Interval_164752 chr9 41105006 41106273 + 0 NA intron (ENSMUSG00000032020.15, intron 1 of 3) protein_coding-intron (ENSMUSG00000032020.15, intron 1 of 13) 6442 ENSMUSG00000110914.1 ENSMUSG00000110914 ENSMUST00000217288 Gm48611 TEC Interval_112047 chr4 33494636 33495086 + 0 NA intron (ENSMUSG00000028274.17, intron 14 of 15) protein_coding-intron (ENSMUSG00000028274.17, intron 14 of 15) -41972 ENSMUSG00000081206.1 ENSMUSG00000081206 ENSMUST00000118608 Gm11935 processed_pseudogene Interval_77784 chr18 3477993 3478254 + 0 NA Intergenic Intergenic -6095 ENSMUSG00000117469.1 ENSMUSG00000117469 ENSMUST00000234804 Gm50089 processed_pseudogene Interval_84576 chr19 12915866 12916214 + 0 NA TTS (ENSMUSG00000048456.3) protein_coding-TTS (ENSMUSG00000048456.3) 8379 ENSMUSG00000048456.3 ENSMUSG00000048456 ENSMUST00000054737 Olfr1448 protein_coding Interval_173809 chrX 104656439 104657801 + 0 NA intron (ENSMUSG00000033906.5, intron 1 of 11) protein_coding-intron (ENSMUSG00000033906.5, intron 1 of 11) 13944 ENSMUSG00000033906.5 ENSMUSG00000033906 ENSMUST00000042070 Zdhhc15 protein_coding Interval_139336 chr6 99027544 99029687 + 0 NA promoter-TSS (ENSMUSG00000030067.17) protein_coding-promoter-TSS (ENSMUSG00000030067.17) 15827 ENSMUSG00000030067.17 ENSMUSG00000030067 ENSMUST00000175838 Foxp1 protein_coding Interval_35311 chr12 20421792 20422419 + 0 NA Intergenic Intergenic 4383 ENSMUSG00000113749.1 ENSMUSG00000113749 ENSMUST00000220565 Mrto4-ps1 processed_pseudogene Interval_119795 chr4 140037453 140039629 + 0 NA intron (ENSMUSG00000040972.8, intron 4 of 9) protein_coding-intron (ENSMUSG00000040972.8, intron 4 of 9) -70515 ENSMUSG00000078234.6 ENSMUSG00000078234 ENSMUST00000105031 Klhdc7a protein_coding Interval_60267 chr15 71650112 71650944 + 0 NA intron (ENSMUSG00000036800.8, intron 1 of 8) protein_coding-intron (ENSMUSG00000036800.8, intron 1 of 19) 77310 ENSMUSG00000036800.8 ENSMUSG00000036800 ENSMUST00000229189 Fam135b protein_coding Interval_117872 chr4 126795660 126795933 + 0 NA exon (ENSMUSG00000082498.1, exon 2 of 2) processed_pseudogene-exon (ENSMUSG00000082498.1, exon 2 of 2) 619 ENSMUSG00000082498.1 ENSMUSG00000082498 ENSMUST00000118333 Gm12937 processed_pseudogene Interval_131849 chr5 140357918 140358309 + 0 NA exon (ENSMUSG00000029560.12, exon 3 of 11) protein_coding-exon (ENSMUSG00000029560.12, exon 3 of 11) 8997 ENSMUSG00000029560.12 ENSMUSG00000029560 ENSMUST00000196020 Snx8 protein_coding Interval_5164 chr1 86154105 86155080 + 0 NA promoter-TSS (ENSMUSG00000062590.13) protein_coding-promoter-TSS (ENSMUSG00000062590.13) -207 ENSMUSG00000062590.13 ENSMUSG00000062590 ENSMUST00000126579 Armc9 protein_coding Interval_86253 chr19 38109228 38110188 + 0 NA intron (ENSMUSG00000054200.7, intron 2 of 2) protein_coding-intron (ENSMUSG00000054200.7, intron 2 of 2) 12637 ENSMUSG00000054200.7 ENSMUSG00000054200 ENSMUST00000067098 Ffar4 protein_coding Interval_85406 chr19 25544822 25545087 + 0 NA intron (ENSMUSG00000024837.15, intron 2 of 3) protein_coding-intron (ENSMUSG00000024837.15, intron 2 of 4) 39247 ENSMUSG00000024837.15 ENSMUSG00000024837 ENSMUST00000160814 Dmrt1 protein_coding Interval_172906 chrX 53064004 53064907 + 0 NA Intergenic Intergenic -7265 ENSMUSG00000087365.7 ENSMUSG00000087365 ENSMUST00000151099 C430049B03Rik processed_transcript Interval_6856 chr1 120114273 120114484 + 0 NA intron (ENSMUSG00000026385.16, intron 3 of 3) protein_coding-intron (ENSMUSG00000026385.16, intron 3 of 3) 6559 ENSMUSG00000026385.16 ENSMUSG00000026385 ENSMUST00000149628 Dbi protein_coding Interval_45555 chr13 55828187 55828993 + 0 NA exon (ENSMUSG00000021506.7, exon 2 of 3) protein_coding-exon (ENSMUSG00000021506.7, exon 2 of 3) 2340 ENSMUSG00000114493.2 ENSMUSG00000114493 ENSMUST00000225993 Gm47071 antisense Interval_33102 chr11 114452684 114454211 + 0 NA Intergenic Intergenic -4587 ENSMUSG00000062391.3 ENSMUSG00000062391 ENSMUST00000141088 4932435O22Rik lincRNA Interval_143172 chr7 4146792 4147042 + 0 NA TTS (ENSMUSG00000043432.7) protein_coding-TTS (ENSMUSG00000043432.7) 3457 ENSMUSG00000043432.7 ENSMUSG00000043432 ENSMUST00000058358 Leng9 protein_coding Interval_162861 chr9 10540636 10541523 + 0 NA intron (ENSMUSG00000039488.15, intron 2 of 20) protein_coding-intron (ENSMUSG00000039488.15, intron 2 of 24) 65144 ENSMUSG00000111648.1 ENSMUSG00000111648 ENSMUST00000217614 Gm46103 processed_pseudogene Interval_115551 chr4 100722007 100723196 + 0 NA Intergenic Intergenic 141323 ENSMUSG00000082601.1 ENSMUSG00000082601 ENSMUST00000118145 Gm12700 processed_pseudogene Interval_95742 chr2 115606021 115606288 + 0 NA intron (ENSMUSG00000040282.13, intron 1 of 10) protein_coding-intron (ENSMUSG00000040282.13, intron 1 of 10) 24438 ENSMUSG00000040282.13 ENSMUSG00000040282 ENSMUST00000147968 BC052040 protein_coding Interval_136855 chr6 61460070 61460357 + 0 NA intron (ENSMUSG00000039578.17, intron 3 of 3) protein_coding-intron (ENSMUSG00000039578.17, intron 4 of 9) 59606 ENSMUSG00000107757.1 ENSMUSG00000107757 ENSMUST00000204456 Gm43898 processed_pseudogene Interval_148453 chr7 81341586 81342029 + 0 NA TTS (ENSMUSG00000061787.15) protein_coding-TTS (ENSMUSG00000061787.15) 3420 ENSMUSG00000061787.15 ENSMUSG00000061787 ENSMUST00000138936 Rps17 protein_coding Interval_37828 chr12 72324458 72324683 + 0 NA intron (ENSMUSG00000021087.18, intron 1 of 8) protein_coding-intron (ENSMUSG00000021087.18, intron 1 of 8) -88022 ENSMUSG00000021087.18 ENSMUSG00000021087 ENSMUST00000221756 Rtn1 protein_coding Interval_141428 chr6 128224781 128225947 + 0 NA intron (ENSMUSG00000030353.15, intron 11 of 11) protein_coding-intron (ENSMUSG00000030353.15, intron 11 of 11) -11350 ENSMUSG00000108280.1 ENSMUSG00000108280 ENSMUST00000203793 Gm8703 processed_pseudogene Interval_52271 chr14 41242804 41244413 + 0 NA Intergenic Intergenic -4078 ENSMUSG00000094710.1 ENSMUSG00000094710 ENSMUST00000179754 Gm22823 snRNA Interval_75194 chr17 64557012 64557854 + 0 NA Intergenic Intergenic -1773 ENSMUSG00000073377.9 ENSMUSG00000073377 ENSMUST00000168379 AU016765 lincRNA Interval_58437 chr15 34514855 34515153 + 0 NA promoter-TSS (ENSMUSG00000022325.14) protein_coding-promoter-TSS (ENSMUSG00000022325.14) 834 ENSMUSG00000022325.14 ENSMUSG00000022325 ENSMUST00000153061 Pop1 protein_coding Interval_164622 chr9 40167642 40168499 + 0 NA Intergenic Intergenic -12850 ENSMUSG00000051095.7 ENSMUSG00000051095 ENSMUST00000062229 Olfr986 protein_coding Interval_157769 chr8 72932310 72933497 + 0 NA intron (ENSMUSG00000004383.18, intron 7 of 15) protein_coding-intron (ENSMUSG00000004383.18, intron 6 of 14) -83609 ENSMUSG00000093140.1 ENSMUSG00000093140 ENSMUST00000175399 Mir28b miRNA Interval_98209 chr2 149906566 149907265 + 0 NA intron (ENSMUSG00000074736.10, intron 2 of 3) protein_coding-intron (ENSMUSG00000074736.10, intron 3 of 4) -75273 ENSMUSG00000074737.2 ENSMUSG00000074737 ENSMUST00000099264 C530025M09Rik antisense Interval_46184 chr13 62278899 62279338 + 0 NA Intergenic Intergenic 6357 ENSMUSG00000113081.1 ENSMUSG00000113081 ENSMUST00000221763 Gm3333 transcribed_processed_pseudogene Interval_50720 chr14 18540099 18540377 + 0 NA Intergenic Intergenic 4894 ENSMUSG00000114529.1 ENSMUSG00000114529 ENSMUST00000224515 Gm4939 processed_pseudogene Interval_115696 chr4 102480579 102481065 + 0 NA intron (ENSMUSG00000028525.16, intron 1 of 1) protein_coding-intron (ENSMUSG00000028525.16, intron 1 of 14) 225592 ENSMUSG00000028525.16 ENSMUSG00000028525 ENSMUST00000106901 Pde4b protein_coding Interval_120220 chr4 144403368 144404952 + 0 NA promoter-TSS (ENSMUSG00000028590.6) antisense-promoter-TSS (ENSMUSG00000028590.6) -708 ENSMUSG00000028590.6 ENSMUSG00000028590 ENSMUST00000133334 Pramef12os antisense Interval_13682 chr10 20985805 20986222 + 0 NA intron (ENSMUSG00000019986.17, intron 12 of 23) protein_coding-intron (ENSMUSG00000019986.17, intron 13 of 23) 47780 ENSMUSG00000111006.1 ENSMUSG00000111006 ENSMUST00000215366 Gm10826 TEC Interval_155988 chr8 41513119 41514494 + 0 NA Intergenic Intergenic 95863 ENSMUSG00000098149.1 ENSMUSG00000098149 ENSMUST00000183246 Gapdh-ps14 processed_pseudogene Interval_37561 chr12 69880932 69881951 + 0 NA intron (ENSMUSG00000034761.15, intron 1 of 7) protein_coding-intron (ENSMUSG00000034761.15, intron 1 of 30) 11662 ENSMUSG00000034761.15 ENSMUSG00000034761 ENSMUST00000147451 Map4k5 protein_coding Interval_123854 chr5 35975705 35976289 + 0 NA intron (ENSMUSG00000029094.12, intron 10 of 14) protein_coding-intron (ENSMUSG00000029094.12, intron 10 of 16) -8191 ENSMUSG00000029094.12 ENSMUSG00000029094 ENSMUST00000201482 Afap1 protein_coding Interval_87416 chr19 49523322 49523742 + 0 NA Intergenic Intergenic -30486 ENSMUSG00000117931.1 ENSMUSG00000117931 ENSMUST00000238143 Gm50444 unprocessed_pseudogene Interval_39106 chr12 85093984 85094946 + 0 NA exon (ENSMUSG00000042320.17, exon 2 of 5) protein_coding-exon (ENSMUSG00000042320.17, exon 2 of 5) 7882 ENSMUSG00000102935.1 ENSMUSG00000102935 ENSMUST00000192514 Gm38355 TEC Interval_158564 chr8 84521475 84523626 + 0 NA intron (ENSMUSG00000034656.18, intron 7 of 48) protein_coding-intron (ENSMUSG00000034656.18, intron 5 of 46) 94634 ENSMUSG00000086067.1 ENSMUSG00000086067 ENSMUST00000127527 Gm16183 antisense Interval_107169 chr3 104226598 104227961 + 0 NA Intergenic Intergenic 26169 ENSMUSG00000088479.1 ENSMUSG00000088479 ENSMUST00000157854 Gm23077 snoRNA Interval_8972 chr1 152824178 152824668 + 0 NA TTS (ENSMUSG00000026480.12) protein_coding-TTS (ENSMUSG00000026480.12) 16586 ENSMUSG00000026480.12 ENSMUSG00000026480 ENSMUST00000187235 Ncf2 protein_coding Interval_77338 chr17 88064145 88066622 + 0 NA promoter-TSS (ENSMUSG00000005371.15) protein_coding-promoter-TSS (ENSMUSG00000005371.15) -140 ENSMUSG00000005371.15 ENSMUSG00000005371 ENSMUST00000235056 Fbxo11 protein_coding Interval_113563 chr4 56725837 56726637 + 0 NA Intergenic Intergenic -13833 ENSMUSG00000096930.1 ENSMUSG00000096930 ENSMUST00000181745 Gm26657 protein_coding Interval_99819 chr2 165121077 165122240 + 0 NA intron (ENSMUSG00000053166.14, intron 9 of 10) protein_coding-intron (ENSMUSG00000053166.14, intron 10 of 11) -30908 ENSMUSG00000078935.1 ENSMUSG00000078935 ENSMUST00000109304 1700025C18Rik protein_coding Interval_67213 chr16 44484292 44484509 + 0 NA TTS (ENSMUSG00000022687.12) protein_coding-TTS (ENSMUSG00000022687.12) 73729 ENSMUSG00000093046.1 ENSMUSG00000093046 ENSMUST00000175305 Mir3081 miRNA Interval_19099 chr10 94549384 94550008 + 0 NA intron (ENSMUSG00000020023.18, intron 1 of 1) protein_coding-intron (ENSMUSG00000020023.18, intron 1 of 3) -1156 ENSMUSG00000020023.18 ENSMUSG00000020023 ENSMUST00000117929 Tmcc3 protein_coding Interval_69075 chr16 90437110 90437976 + 0 NA intron (ENSMUSG00000053414.8, intron 2 of 10) protein_coding-intron (ENSMUSG00000053414.8, intron 2 of 10) 36999 ENSMUSG00000053414.8 ENSMUSG00000053414 ENSMUST00000231603 Hunk protein_coding Interval_149299 chr7 97158205 97158391 + 0 NA intron (ENSMUSG00000004508.6, intron 1 of 9) protein_coding-intron (ENSMUSG00000004508.6, intron 1 of 9) 76522 ENSMUSG00000004508.6 ENSMUSG00000004508 ENSMUST00000206791 Gab2 protein_coding Interval_36750 chr12 53024810 53025030 + 0 NA intron (ENSMUSG00000061603.8, intron 7 of 11) protein_coding-intron (ENSMUSG00000061603.8, intron 8 of 13) 21906 ENSMUSG00000070192.1 ENSMUSG00000070192 ENSMUST00000093682 n-R5s58 rRNA Interval_118629 chr4 132883856 132885227 + 0 NA promoter-TSS (ENSMUSG00000028879.4) protein_coding-promoter-TSS (ENSMUSG00000028879.4) -222 ENSMUSG00000083816.3 ENSMUSG00000083816 ENSMUST00000117591 Gm13033 processed_pseudogene Interval_62064 chr15 86168988 86169231 + 0 NA intron (ENSMUSG00000035891.16, intron 1 of 12) protein_coding-intron (ENSMUSG00000035891.16, intron 1 of 12) -16619 ENSMUSG00000086424.1 ENSMUSG00000086424 ENSMUST00000133675 Gm15569 antisense Interval_12877 chr10 7182725 7182988 + 0 NA intron (ENSMUSG00000015202.13, intron 1 of 12) protein_coding-intron (ENSMUSG00000015202.13, intron 1 of 12) -47350 ENSMUSG00000015202.13 ENSMUSG00000015202 ENSMUST00000015346 Cnksr3 protein_coding Interval_79384 chr18 31492576 31492880 + 0 NA Intergenic Intergenic -26361 ENSMUSG00000077169.1 ENSMUSG00000077169 ENSMUST00000103981 Gm25396 snoRNA Interval_92242 chr2 57276823 57277304 + 0 NA intron (ENSMUSG00000026827.12, intron 2 of 16) protein_coding-intron (ENSMUSG00000026827.12, intron 2 of 16) -1377 ENSMUSG00000084292.1 ENSMUSG00000084292 ENSMUST00000118714 Gm13535 processed_pseudogene Interval_50565 chr14 15572044 15572627 + 0 NA Intergenic Intergenic 29688 ENSMUSG00000114941.1 ENSMUSG00000114941 ENSMUST00000223575 Gm47779 processed_pseudogene Interval_76561 chr17 81095711 81096067 + 0 NA Intergenic Intergenic -30807 ENSMUSG00000024246.9 ENSMUSG00000024246 ENSMUST00000234801 Thumpd2 protein_coding Interval_78670 chr18 16699114 16699348 + 0 NA intron (ENSMUSG00000024304.14, intron 2 of 15) protein_coding-intron (ENSMUSG00000024304.14, intron 2 of 15) -29502 ENSMUSG00000085575.1 ENSMUSG00000085575 ENSMUST00000149095 Gm15485 antisense Interval_17929 chr10 80871441 80871941 + 0 NA promoter-TSS (ENSMUSG00000059406.8) protein_coding-promoter-TSS (ENSMUSG00000059406.8) -157 ENSMUSG00000059406.8 ENSMUSG00000059406 ENSMUST00000105333 Tmprss9 protein_coding Interval_14608 chr10 36981271 36982477 + 0 NA intron (ENSMUSG00000019777.16, intron 1 of 7) protein_coding-intron (ENSMUSG00000019777.16, intron 1 of 13) -9892 ENSMUSG00000019777.16 ENSMUSG00000019777 ENSMUST00000123010 Hdac2 protein_coding Interval_152318 chr7 131714746 131714945 + 0 NA intron (ENSMUSG00000030849.18, intron 2 of 6) protein_coding-intron (ENSMUSG00000030849.18, intron 2 of 6) -39963 ENSMUSG00000109066.1 ENSMUSG00000109066 ENSMUST00000207218 Gm4585 processed_pseudogene Interval_151969 chr7 127870309 127870745 + 0 NA intron (ENSMUSG00000049728.14, intron 1 of 2) protein_coding-intron (ENSMUSG00000049728.14, intron 1 of 2) 5607 ENSMUSG00000049728.14 ENSMUSG00000049728 ENSMUST00000150961 Zfp668 protein_coding Interval_112985 chr4 46627983 46630901 + 0 NA intron (ENSMUSG00000039813.14, intron 4 of 12) protein_coding-intron (ENSMUSG00000039813.14, intron 4 of 12) 20767 ENSMUSG00000039813.14 ENSMUSG00000039813 ENSMUST00000107750 Tbc1d2 protein_coding Interval_5582 chr1 89959393 89959944 + 0 NA intron (ENSMUSG00000067081.13, intron 2 of 3) protein_coding-intron (ENSMUSG00000067081.13, intron 4 of 5) 29407 ENSMUSG00000092627.2 ENSMUSG00000092627 ENSMUST00000189763 D130058E05Rik processed_transcript Interval_104355 chr3 63970220 63970938 + 0 NA Intergenic Intergenic -5527 ENSMUSG00000027823.9 ENSMUSG00000027823 ENSMUST00000029405 Gmps protein_coding Interval_140891 chr6 122624387 122625153 + 0 NA Intergenic Intergenic 1223 ENSMUSG00000065721.1 ENSMUSG00000065721 ENSMUST00000083787 Gm26168 misc_RNA Interval_6531 chr1 114725806 114726017 + 0 NA Intergenic Intergenic 493852 ENSMUSG00000101687.1 ENSMUSG00000101687 ENSMUST00000185902 Gm4854 processed_pseudogene Interval_18467 chr10 86389336 86390374 + 0 NA intron (ENSMUSG00000059602.14, intron 4 of 8) protein_coding-intron (ENSMUSG00000059602.14, intron 4 of 13) 89301 ENSMUSG00000020044.13 ENSMUSG00000020044 ENSMUST00000132307 Timp3 protein_coding Interval_141393 chr6 127970057 127971410 + 0 NA intron (ENSMUSG00000030352.15, intron 2 of 2) protein_coding-intron (ENSMUSG00000030352.15, intron 3 of 8) -25894 ENSMUSG00000085813.1 ENSMUSG00000085813 ENSMUST00000132657 Gm15870 antisense Interval_125445 chr5 67215129 67217220 + 0 NA Intergenic Intergenic -44580 ENSMUSG00000037720.16 ENSMUSG00000037720 ENSMUST00000163028 Tmem33 protein_coding Interval_58244 chr15 31317225 31318280 + 0 NA intron (ENSMUSG00000022237.17, intron 1 of 2) protein_coding-intron (ENSMUSG00000022237.17, intron 1 of 2) -9558 ENSMUSG00000022237.17 ENSMUSG00000022237 ENSMUST00000227391 Ankrd33b protein_coding Interval_46065 chr13 60713950 60714521 + 0 NA intron (ENSMUSG00000021559.14, intron 1 of 7) protein_coding-intron (ENSMUSG00000021559.14, intron 3 of 26) -57440 ENSMUSG00000096874.2 ENSMUSG00000096874 ENSMUST00000078515 Gm10312 processed_pseudogene Interval_68254 chr16 71276252 71276530 + 0 NA Intergenic Intergenic 26507 ENSMUSG00000116982.1 ENSMUSG00000116982 ENSMUST00000231541 4930567J20Rik lincRNA Interval_155624 chr8 35268525 35269599 + 0 NA Intergenic Intergenic -23583 ENSMUSG00000109688.1 ENSMUSG00000109688 ENSMUST00000211189 Gm34597 lincRNA Interval_120400 chr4 148376454 148377543 + 0 NA Intergenic Intergenic -17538 ENSMUSG00000086326.1 ENSMUSG00000086326 ENSMUST00000138802 Gm13200 lincRNA Interval_143246 chr7 4723455 4724197 + 0 NA exon (ENSMUSG00000046456.14, exon 4 of 6) protein_coding-exon (ENSMUSG00000046456.14, exon 4 of 6) 1423 ENSMUSG00000046456.14 ENSMUSG00000046456 ENSMUST00000086363 Tmem150b protein_coding Interval_102889 chr3 32553080 32553314 + 0 NA promoter-TSS (ENSMUSG00000027668.13) protein_coding-promoter-TSS (ENSMUSG00000027668.13) -21021 ENSMUSG00000027668.13 ENSMUSG00000027668 ENSMUST00000195334 Mfn1 protein_coding Interval_652 chr1 9571807 9573661 + 0 NA intron (ENSMUSG00000025911.14, intron 13 of 14) protein_coding-intron (ENSMUSG00000025911.14, intron 12 of 12) -1814 ENSMUSG00000081441.3 ENSMUSG00000081441 ENSMUST00000121942 Gm6161 processed_pseudogene Interval_3007 chr1 52113228 52114158 + 0 NA promoter-TSS (ENSMUSG00000109599.1) lincRNA-promoter-TSS (ENSMUSG00000109599.1) 58 ENSMUSG00000109599.1 ENSMUSG00000109599 ENSMUST00000210323 Gm31812 lincRNA Interval_120510 chr4 149066871 149067559 + 0 NA intron (ENSMUSG00000028975.16, intron 2 of 3) protein_coding-intron (ENSMUSG00000028975.16, intron 2 of 8) -29168 ENSMUSG00000081086.1 ENSMUSG00000081086 ENSMUST00000118516 Gm9506 processed_pseudogene Interval_83394 chr18 84850778 84851969 + 0 NA promoter-TSS (ENSMUSG00000024646.14) protein_coding-promoter-TSS (ENSMUSG00000024646.14) -41 ENSMUSG00000024646.14 ENSMUSG00000024646 ENSMUST00000159837 Cyb5a protein_coding Interval_145153 chr7 30321533 30323128 + 0 NA exon (ENSMUSG00000074210.3, exon 1 of 1) protein_coding-exon (ENSMUSG00000074210.3, exon 1 of 1) 590 ENSMUSG00000074210.3 ENSMUSG00000074210 ENSMUST00000098585 E130208F15Rik protein_coding Interval_34514 chr12 4842919 4844018 + 0 NA promoter-TSS (ENSMUSG00000051721.6) protein_coding-promoter-TSS (ENSMUSG00000051721.6) 165 ENSMUSG00000051721.6 ENSMUSG00000051721 ENSMUST00000085793 Wdcp protein_coding Interval_57719 chr15 16661230 16661877 + 0 NA Intergenic Intergenic -60991 ENSMUSG00000115670.1 ENSMUSG00000115670 ENSMUST00000228469 Gm2611 processed_pseudogene Interval_17703 chr10 79655012 79655319 + 0 NA Intergenic Intergenic -9422 ENSMUSG00000020310.9 ENSMUSG00000020310 ENSMUST00000217748 Madcam1 protein_coding Interval_53844 chr14 62681442 62681820 + 0 NA intron (ENSMUSG00000035161.7, intron 18 of 18) protein_coding-intron (ENSMUSG00000035161.7, intron 18 of 18) 13019 ENSMUSG00000089531.1 ENSMUSG00000089531 ENSMUST00000158906 Gm25162 snoRNA Interval_131043 chr5 134735078 134735849 + 0 NA intron (ENSMUSG00000029675.12, intron 4 of 23) protein_coding-intron (ENSMUSG00000029675.12, intron 4 of 36) -6357 ENSMUSG00000029675.12 ENSMUSG00000029675 ENSMUST00000201399 Eln protein_coding Interval_111222 chr4 15046783 15046990 + 0 NA intron (ENSMUSG00000040536.15, intron 6 of 13) protein_coding-intron (ENSMUSG00000040536.15, intron 5 of 12) 24304 ENSMUSG00000087241.1 ENSMUSG00000087241 ENSMUST00000129207 Gm11844 antisense Interval_20924 chr10 122051986 122052293 + 0 NA Intergenic Intergenic -4824 ENSMUSG00000020121.15 ENSMUSG00000020121 ENSMUST00000162710 Srgap1 protein_coding Interval_16478 chr10 63083890 63085363 + 0 NA Intergenic Intergenic -9566 ENSMUSG00000112374.1 ENSMUSG00000112374 ENSMUST00000218358 Gm48072 antisense Interval_148897 chr7 89915510 89916169 + 0 NA Intergenic Intergenic -12210 ENSMUSG00000039391.11 ENSMUSG00000039391 ENSMUST00000041195 Ccdc81 protein_coding Interval_62441 chr15 92969782 92970204 + 0 NA exon (ENSMUSG00000116242.1, exon 1 of 1) processed_pseudogene-exon (ENSMUSG00000116242.1, exon 1 of 1) 1178 ENSMUSG00000116242.1 ENSMUSG00000116242 ENSMUST00000230575 Gm18815 processed_pseudogene Interval_125312 chr5 66134363 66135063 + 0 NA intron (ENSMUSG00000070780.11, intron 1 of 2) protein_coding-intron (ENSMUSG00000070780.11, intron 1 of 5) 16243 ENSMUSG00000070780.11 ENSMUSG00000070780 ENSMUST00000201670 Rbm47 protein_coding Interval_67173 chr16 44138503 44140745 + 0 NA promoter-TSS (ENSMUSG00000022698.17) protein_coding-promoter-TSS (ENSMUSG00000022698.17) 81 ENSMUSG00000052459.13 ENSMUSG00000052459 ENSMUST00000147025 Atp6v1a protein_coding Interval_139042 chr6 94525775 94526210 + 0 NA intron (ENSMUSG00000045100.11, intron 4 of 9) protein_coding-intron (ENSMUSG00000045100.11, intron 3 of 9) 25443 ENSMUSG00000045100.11 ENSMUSG00000045100 ENSMUST00000203484 Slc25a26 protein_coding Interval_174008 chrX 129428791 129429243 + 0 NA Intergenic Intergenic 89509 ENSMUSG00000084337.1 ENSMUSG00000084337 ENSMUST00000121262 Gm14986 processed_pseudogene Interval_22806 chr11 16051135 16051722 + 0 NA Intergenic Intergenic 13635 ENSMUSG00000104323.1 ENSMUSG00000104323 ENSMUST00000193500 Gm37319 TEC Interval_83559 chr18 89470993 89471842 + 0 NA exon (ENSMUSG00000073514.4, exon 3 of 3) protein_coding-exon (ENSMUSG00000073514.4, exon 3 of 3) 63045 ENSMUSG00000089885.2 ENSMUSG00000089885 ENSMUST00000159905 Gm16296 processed_pseudogene Interval_138933 chr6 93629535 93630316 + 0 NA Intergenic Intergenic 20300 ENSMUSG00000107739.1 ENSMUSG00000107739 ENSMUST00000203479 Gm7812 processed_pseudogene Interval_104620 chr3 68894092 68896235 + 0 NA intron (ENSMUSG00000027778.15, intron 19 of 19) protein_coding-intron (ENSMUSG00000027778.15, intron 18 of 18) 5286 ENSMUSG00000093384.1 ENSMUSG00000093384 ENSMUST00000176033 Gm20689 processed_pseudogene Interval_62708 chr15 96388289 96388637 + 0 NA intron (ENSMUSG00000033237.19, intron 1 of 4) protein_coding-intron (ENSMUSG00000033237.19, intron 16 of 20) 9649 ENSMUSG00000033237.19 ENSMUSG00000033237 ENSMUST00000176739 Arid2 protein_coding Interval_31092 chr11 98085546 98086948 + 0 NA promoter-TSS (ENSMUSG00000084896.1) processed_transcript-promoter-TSS (ENSMUSG00000084896.1) -823 ENSMUSG00000084896.1 ENSMUSG00000084896 ENSMUST00000145489 Gm11632 processed_transcript Interval_161131 chr8 117673539 117673975 + 0 NA promoter-TSS (ENSMUSG00000034308.13) protein_coding-promoter-TSS (ENSMUSG00000034308.13) -68 ENSMUSG00000034308.13 ENSMUSG00000034308 ENSMUST00000174450 Sdr42e1 protein_coding Interval_166028 chr9 55566056 55566490 + 0 NA intron (ENSMUSG00000034007.10, intron 30 of 32) protein_coding-intron (ENSMUSG00000034007.10, intron 28 of 30) -10561 ENSMUSG00000064472.1 ENSMUSG00000064472 ENSMUST00000082538 Gm23407 snRNA Interval_152230 chr7 130788052 130789724 + 0 NA intron (ENSMUSG00000040298.6, intron 6 of 15) protein_coding-intron (ENSMUSG00000040298.6, intron 6 of 15) 14721 ENSMUSG00000040298.6 ENSMUSG00000040298 ENSMUST00000208593 Btbd16 protein_coding Interval_83867 chr19 5186869 5187252 + 0 NA intron (ENSMUSG00000024855.10, intron 2 of 4) protein_coding-intron (ENSMUSG00000024855.10, intron 1 of 23) 14243 ENSMUSG00000098803.1 ENSMUSG00000098803 ENSMUST00000183577 Gm27468 miRNA Interval_11191 chr1 180000558 180000759 + 0 NA intron (ENSMUSG00000026490.18, intron 2 of 37) protein_coding-intron (ENSMUSG00000026490.18, intron 2 of 34) -20404 ENSMUSG00000102194.1 ENSMUSG00000102194 ENSMUST00000191822 Gm38169 TEC Interval_158181 chr8 79587365 79587734 + 0 NA Intergenic Intergenic -36801 ENSMUSG00000097975.1 ENSMUSG00000097975 ENSMUST00000182695 Gm8079 processed_pseudogene Interval_25760 chr11 51564054 51566189 + 0 NA intron (ENSMUSG00000063564.13, intron 14 of 28) protein_coding-intron (ENSMUSG00000063564.13, intron 14 of 28) -9311 ENSMUSG00000063564.13 ENSMUSG00000063564 ENSMUST00000151098 Col23a1 protein_coding Interval_74701 chr17 56052856 56053348 + 0 NA intron (ENSMUSG00000002835.9, intron 1 of 10) protein_coding-intron (ENSMUSG00000002835.9, intron 3 of 13) 6288 ENSMUSG00000002835.9 ENSMUSG00000002835 ENSMUST00000232828 Chaf1a protein_coding Interval_65365 chr16 21908291 21909417 + 0 NA intron (ENSMUSG00000033618.7, intron 8 of 13) protein_coding-intron (ENSMUSG00000033618.7, intron 7 of 12) 12348 ENSMUSG00000117327.1 ENSMUSG00000117327 ENSMUST00000232683 Gm6467 pseudogene Interval_19045 chr10 94044071 94044803 + 0 NA exon (ENSMUSG00000020021.4, exon 2 of 21) protein_coding-exon (ENSMUSG00000020021.4, exon 2 of 21) -8636 ENSMUSG00000110869.1 ENSMUSG00000110869 ENSMUST00000214203 Gm49628 TEC Interval_101130 chr2 178240516 178241801 + 0 NA intron (ENSMUSG00000027525.18, intron 1 of 12) protein_coding-intron (ENSMUSG00000027525.18, intron 1 of 12) -86398 ENSMUSG00000027525.18 ENSMUSG00000027525 ENSMUST00000133267 Phactr3 protein_coding Interval_150917 chr7 116333688 116334835 + 0 NA promoter-TSS (ENSMUSG00000090862.3) protein_coding-promoter-TSS (ENSMUSG00000090862.3) 6 ENSMUSG00000108738.1 ENSMUSG00000108738 ENSMUST00000206492 Gm44777 antisense Interval_149188 chr7 96147828 96148680 + 0 NA Intergenic Intergenic 55282 ENSMUSG00000108528.1 ENSMUSG00000108528 ENSMUST00000205708 Gm8319 processed_pseudogene Interval_71771 chr17 25978398 25978828 + 0 NA intron (ENSMUSG00000037326.10, intron 1 of 11) protein_coding-intron (ENSMUSG00000037326.10, intron 1 of 11) 7067 ENSMUSG00000037326.10 ENSMUSG00000037326 ENSMUST00000212702 Capn15 protein_coding Interval_14888 chr10 40845651 40846228 + 0 NA promoter-TSS (ENSMUSG00000038446.8) protein_coding-promoter-TSS (ENSMUSG00000038446.8) -2 ENSMUSG00000038446.8 ENSMUSG00000038446 ENSMUST00000215441 Cdc40 protein_coding Interval_26010 chr11 53463273 53464356 + 0 NA promoter-TSS (ENSMUSG00000085707.1) antisense-promoter-TSS (ENSMUSG00000085707.1) -201 ENSMUSG00000085707.1 ENSMUSG00000085707 ENSMUST00000141032 Gm12212 antisense Interval_83581 chr18 90140524 90140937 + 0 NA Intergenic Intergenic -88169 ENSMUSG00000089008.1 ENSMUSG00000089008 ENSMUST00000158383 Gm23859 snRNA Interval_96763 chr2 127845505 127845709 + 0 NA intron (ENSMUSG00000027380.10, intron 1 of 5) protein_coding-intron (ENSMUSG00000027380.10, intron 1 of 5) 6731 ENSMUSG00000027380.10 ENSMUSG00000027380 ENSMUST00000110344 Acoxl protein_coding Interval_24234 chr11 31690859 31691321 + 0 NA Intergenic Intergenic -7558 ENSMUSG00000103635.1 ENSMUSG00000103635 ENSMUST00000192490 Gm38061 TEC Interval_71536 chr17 24413758 24415472 + 0 NA promoter-TSS (ENSMUSG00000073437.10) processed_transcript-promoter-TSS (ENSMUSG00000073437.10) -36 ENSMUSG00000034681.17 ENSMUSG00000034681 ENSMUST00000234630 Rnps1 protein_coding Interval_53140 chr14 54678700 54679068 + 0 NA TTS (ENSMUSG00000022185.19) protein_coding-TTS (ENSMUSG00000022185.19) -7353 ENSMUSG00000040822.7 ENSMUSG00000040822 ENSMUST00000227269 1700123O20Rik protein_coding Interval_48117 chr13 96351933 96352146 + 0 NA Intergenic Intergenic -5072 ENSMUSG00000076343.1 ENSMUSG00000076343 ENSMUST00000102388 Gm25213 miRNA Interval_10015 chr1 165075744 165076043 + 0 NA intron (ENSMUSG00000102408.1, intron 1 of 4) lincRNA-intron (ENSMUSG00000102408.1, intron 1 of 4) 16035 ENSMUSG00000102408.1 ENSMUSG00000102408 ENSMUST00000195635 4930568G15Rik lincRNA Interval_171321 chr9 116346683 116346961 + 0 NA Intergenic Intergenic 15654 ENSMUSG00000110752.1 ENSMUSG00000110752 ENSMUST00000217456 D730003K21Rik lincRNA Interval_118377 chr4 130974828 130975849 + 0 NA intron (ENSMUSG00000085804.1, intron 1 of 3) lincRNA-intron (ENSMUSG00000085804.1, intron 1 of 3) 548 ENSMUSG00000085804.1 ENSMUSG00000085804 ENSMUST00000143967 Gm12973 lincRNA Interval_53957 chr14 63783615 63784772 + 0 NA intron (ENSMUSG00000035067.9, intron 1 of 2) protein_coding-intron (ENSMUSG00000035067.9, intron 1 of 2) 57004 ENSMUSG00000076049.4 ENSMUSG00000076049 ENSMUST00000102094 Mir598 miRNA Interval_74300 chr17 48646560 48647870 + 0 NA Intergenic Intergenic 29392 ENSMUSG00000077708.1 ENSMUSG00000077708 ENSMUST00000104520 Gm24071 snoRNA Interval_155174 chr8 27206390 27207716 + 0 NA intron (ENSMUSG00000039720.7, intron 1 of 1) protein_coding-intron (ENSMUSG00000039720.7, intron 1 of 1) 16775 ENSMUSG00000039720.7 ENSMUSG00000039720 ENSMUST00000209299 Got1l1 protein_coding Interval_124206 chr5 40750215 40750427 + 0 NA Intergenic Intergenic -344392 ENSMUSG00000089393.1 ENSMUSG00000089393 ENSMUST00000158768 Gm23022 snRNA Interval_32703 chr11 109845918 109847345 + 0 NA intron (ENSMUSG00000087393.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000087393.1, intron 1 of 2) 753 ENSMUSG00000087393.1 ENSMUSG00000087393 ENSMUST00000143247 1700023C21Rik lincRNA Interval_108024 chr3 120085898 120086274 + 0 NA Intergenic Intergenic 117355 ENSMUSG00000104726.1 ENSMUSG00000104726 ENSMUST00000195974 Gm18384 processed_pseudogene Interval_170676 chr9 110034760 110035906 + 0 NA exon (ENSMUSG00000032479.15, exon 7 of 19) protein_coding-exon (ENSMUSG00000032479.15, exon 7 of 19) -5847 ENSMUSG00000105962.1 ENSMUSG00000105962 ENSMUST00000197902 Gm42432 TEC Interval_35571 chr12 24893851 24894598 + 0 NA intron (ENSMUSG00000020646.17, intron 3 of 11) protein_coding-intron (ENSMUSG00000020646.17, intron 1 of 9) 62593 ENSMUSG00000020646.17 ENSMUSG00000020646 ENSMUST00000222994 Mboat2 protein_coding Interval_79266 chr18 28736557 28736827 + 0 NA Intergenic Intergenic 24831 ENSMUSG00000117478.1 ENSMUSG00000117478 ENSMUST00000234187 BC051408 lincRNA Interval_112762 chr4 44683537 44683967 + 0 NA promoter-TSS (ENSMUSG00000014030.15) protein_coding-promoter-TSS (ENSMUSG00000014030.15) 14422 ENSMUSG00000102880.1 ENSMUSG00000102880 ENSMUST00000193095 4930517J16Rik TEC Interval_119891 chr4 140713625 140714496 + 0 NA promoter-TSS (ENSMUSG00000040945.13) protein_coding-promoter-TSS (ENSMUSG00000040945.13) -2983 ENSMUSG00000093071.1 ENSMUSG00000093071 ENSMUST00000175330 Gm25951 miRNA Interval_131340 chr5 136581160 136582669 + 0 NA Intergenic Intergenic -14424 ENSMUSG00000029705.17 ENSMUSG00000029705 ENSMUST00000177305 Cux1 protein_coding Interval_97002 chr2 130402940 130403220 + 0 NA Intergenic Intergenic -2159 ENSMUSG00000100963.1 ENSMUSG00000100963 ENSMUST00000188900 Gm28372 protein_coding Interval_69111 chr16 90736892 90737596 + 0 NA promoter-TSS (ENSMUSG00000039956.9) protein_coding-promoter-TSS (ENSMUSG00000039956.9) -1080 ENSMUSG00000039956.9 ENSMUSG00000039956 ENSMUST00000038197 Mrap protein_coding Interval_109733 chr3 146404123 146405240 + 0 NA promoter-TSS (ENSMUSG00000036825.12) protein_coding-promoter-TSS (ENSMUSG00000036825.12) -10 ENSMUSG00000036825.12 ENSMUSG00000036825 ENSMUST00000141103 Ssx2ip protein_coding Interval_89308 chr2 19160446 19161574 + 0 NA Intergenic Intergenic -38292 ENSMUSG00000037683.14 ENSMUSG00000037683 ENSMUST00000049255 Armc3 protein_coding Interval_75959 chr17 73796812 73797111 + 0 NA Intergenic Intergenic -7173 ENSMUSG00000024065.8 ENSMUSG00000024065 ENSMUST00000024860 Ehd3 protein_coding Interval_13406 chr10 17830816 17831458 + 0 NA intron (ENSMUSG00000039891.6, intron 6 of 9) protein_coding-intron (ENSMUSG00000039891.6, intron 6 of 9) 13758 ENSMUSG00000093537.1 ENSMUSG00000093537 ENSMUST00000175829 Gm7584 processed_pseudogene Interval_103230 chr3 37229716 37229938 + 0 NA TTS (ENSMUSG00000027718.8) protein_coding-TTS (ENSMUSG00000027718.8) -1506 ENSMUSG00000086517.1 ENSMUSG00000086517 ENSMUST00000147691 Gm12534 antisense Interval_94115 chr2 84429938 84430193 + 0 NA Intergenic Intergenic -4799 ENSMUSG00000059588.13 ENSMUSG00000059588 ENSMUST00000151295 Calcrl protein_coding Interval_62466 chr15 93227377 93228613 + 0 NA Intergenic Intergenic -6368 ENSMUSG00000065911.1 ENSMUSG00000065911 ENSMUST00000083977 Gm24447 misc_RNA Interval_115848 chr4 105223239 105224647 + 0 NA intron (ENSMUSG00000028517.8, intron 5 of 5) protein_coding-intron (ENSMUSG00000028517.8, intron 5 of 5) 66596 ENSMUSG00000028517.8 ENSMUSG00000028517 ENSMUST00000064139 Plpp3 protein_coding Interval_33535 chr11 117083578 117084303 + 0 NA Intergenic Intergenic -1896 ENSMUSG00000093083.1 ENSMUSG00000093083 ENSMUST00000175342 Gm24323 miRNA Interval_73220 chr17 35641613 35641906 + 0 NA intron (ENSMUSG00000073408.2, intron 1 of 2) protein_coding-intron (ENSMUSG00000073408.2, intron 1 of 2) 1936 ENSMUSG00000073408.2 ENSMUSG00000073408 ENSMUST00000095467 Mucl3 protein_coding Interval_55377 chr14 86230514 86230833 + 0 NA promoter-TSS (ENSMUSG00000115128.1) processed_pseudogene-promoter-TSS (ENSMUSG00000115128.1) -872 ENSMUSG00000115128.1 ENSMUSG00000115128 ENSMUST00000226552 Gm49062 processed_pseudogene Interval_82993 chr18 80223903 80224994 + 0 NA exon (ENSMUSG00000057130.12, exon 4 of 4) protein_coding-exon (ENSMUSG00000057130.12, exon 4 of 4) 12385 ENSMUSG00000078963.3 ENSMUSG00000078963 ENSMUST00000166219 Hsbp1l1 protein_coding Interval_156171 chr8 45453764 45455146 + 0 NA Intergenic Intergenic -43837 ENSMUSG00000031639.12 ENSMUSG00000031639 ENSMUST00000210354 Tlr3 protein_coding Interval_45140 chr13 52624007 52624996 + 0 NA TTS (ENSMUSG00000021457.14) protein_coding-TTS (ENSMUSG00000021457.14) 40998 ENSMUSG00000021457.14 ENSMUSG00000021457 ENSMUST00000140339 Syk protein_coding Interval_16485 chr10 63135589 63136938 + 0 NA exon (ENSMUSG00000020067.8, exon 11 of 20) protein_coding-exon (ENSMUSG00000020067.8, exon 11 of 20) -13579 ENSMUSG00000020067.8 ENSMUSG00000020067 ENSMUST00000218978 Mypn protein_coding Interval_48852 chr13 104051094 104051342 + 0 NA intron (ENSMUSG00000021710.11, intron 7 of 11) protein_coding-intron (ENSMUSG00000021710.11, intron 7 of 12) -16645 ENSMUSG00000021710.11 ENSMUSG00000021710 ENSMUST00000224086 Nln protein_coding Interval_80000 chr18 36565443 36565664 + 0 NA intron (ENSMUSG00000024483.19, intron 1 of 33) protein_coding-intron (ENSMUSG00000024483.19, intron 1 of 33) 37402 ENSMUSG00000024485.16 ENSMUSG00000024485 ENSMUST00000235382 Slc4a9 protein_coding Interval_64151 chr16 8737560 8739560 + 0 NA promoter-TSS (ENSMUSG00000022710.17) protein_coding-promoter-TSS (ENSMUSG00000022710.17) 27716 ENSMUSG00000084737.1 ENSMUSG00000084737 ENSMUST00000122788 Gm25805 snRNA Interval_17 GL456211.1 89756 90240 + 0 NA NA NA NA NA Interval_77224 chr17 87453919 87454339 + 0 NA promoter-TSS (ENSMUSG00000089427.1) snoRNA-promoter-TSS (ENSMUSG00000089427.1) -773 ENSMUSG00000089427.1 ENSMUSG00000089427 ENSMUST00000158802 Gm26005 snoRNA Interval_85851 chr19 32373876 32374604 + 0 NA intron (ENSMUSG00000040451.18, intron 1 of 5) protein_coding-intron (ENSMUSG00000040451.18, intron 1 of 9) -14976 ENSMUSG00000097787.2 ENSMUSG00000097787 ENSMUST00000181612 2700046G09Rik bidirectional_promoter_lncRNA Interval_151326 chr7 121058585 121058803 + 0 NA intron (ENSMUSG00000030876.7, intron 4 of 4) protein_coding-intron (ENSMUSG00000030876.7, intron 4 of 4) 5265 ENSMUSG00000109036.1 ENSMUSG00000109036 ENSMUST00000207806 2210406H18Rik TEC Interval_167725 chr9 72296781 72297004 + 0 NA intron (ENSMUSG00000038535.17, intron 3 of 19) protein_coding-intron (ENSMUSG00000038535.17, intron 3 of 21) -3552 ENSMUSG00000098893.1 ENSMUSG00000098893 ENSMUST00000183380 Gm17828 processed_pseudogene Interval_99998 chr2 166329443 166330782 + 0 NA Intergenic Intergenic 56204 ENSMUSG00000084840.1 ENSMUSG00000084840 ENSMUST00000152987 Gm11468 lincRNA Interval_165502 chr9 48782776 48783131 + 0 NA intron (ENSMUSG00000066687.5, intron 2 of 6) protein_coding-intron (ENSMUSG00000066687.5, intron 2 of 6) 53269 ENSMUSG00000066687.5 ENSMUSG00000066687 ENSMUST00000216150 Zbtb16 protein_coding Interval_59221 chr15 49000783 49001302 + 0 NA Intergenic Intergenic -94306 ENSMUSG00000089314.1 ENSMUSG00000089314 ENSMUST00000158689 Gm23185 snRNA Interval_46034 chr13 60454832 60456459 + 0 NA Intergenic Intergenic -20914 ENSMUSG00000114274.1 ENSMUSG00000114274 ENSMUST00000225281 Gm35333 lincRNA Interval_70316 chr17 8429388 8430701 + 0 NA Intergenic Intergenic -5367 ENSMUSG00000062327.10 ENSMUSG00000062327 ENSMUST00000177118 T protein_coding Interval_20211 chr10 115989721 115989942 + 0 NA Intergenic Intergenic -120309 ENSMUSG00000112513.1 ENSMUSG00000112513 ENSMUST00000220081 4930422I22Rik antisense Interval_124780 chr5 53950067 53950579 + 0 NA Intergenic Intergenic 31879 ENSMUSG00000107173.1 ENSMUSG00000107173 ENSMUST00000201049 Gm43266 TEC Interval_14583 chr10 36558722 36559261 + 0 NA intron (ENSMUSG00000044499.11, intron 2 of 5) protein_coding-intron (ENSMUSG00000044499.11, intron 2 of 5) 52102 ENSMUSG00000044499.11 ENSMUSG00000044499 ENSMUST00000171521 Hs3st5 protein_coding Interval_140460 chr6 118393974 118394210 + 0 NA intron (ENSMUSG00000030138.8, intron 15 of 22) protein_coding-intron (ENSMUSG00000030138.8, intron 15 of 22) 25312 ENSMUSG00000030138.8 ENSMUSG00000030138 ENSMUST00000203444 Bms1 protein_coding Interval_55735 chr14 99404705 99404905 + 0 NA Intergenic Intergenic 17366 ENSMUSG00000115590.1 ENSMUSG00000115590 ENSMUST00000226661 Gm49219 processed_pseudogene Interval_40621 chr12 106076279 106076625 + 0 NA exon (ENSMUSG00000021115.15, exon 14 of 14) protein_coding-exon (ENSMUSG00000021115.15, exon 14 of 14) -7918 ENSMUSG00000113427.1 ENSMUSG00000113427 ENSMUST00000222979 Gm46378 lincRNA Interval_59837 chr15 59633619 59634220 + 0 NA Intergenic Intergenic -14734 ENSMUSG00000032501.9 ENSMUSG00000032501 ENSMUST00000118228 Trib1 protein_coding Interval_41926 chr13 4589541 4589912 + 0 NA Intergenic Intergenic 15651 ENSMUSG00000021207.9 ENSMUSG00000021207 ENSMUST00000137279 Akr1c21 protein_coding Interval_143989 chr7 18793115 18794655 + 0 NA TTS (ENSMUSG00000004542.15) protein_coding-TTS (ENSMUSG00000004542.15) 4625 ENSMUSG00000004542.15 ENSMUSG00000004542 ENSMUST00000182916 Psg19 protein_coding Interval_103609 chr3 51169641 51170958 + 0 NA Intergenic Intergenic -61618 ENSMUSG00000103313.1 ENSMUSG00000103313 ENSMUST00000195382 Gm38357 TEC Interval_127082 chr5 100166833 100167446 + 0 NA Intergenic Intergenic -7569 ENSMUSG00000050640.16 ENSMUSG00000050640 ENSMUST00000139520 Tmem150c protein_coding Interval_73444 chr17 37308292 37308658 + 0 NA Intergenic Intergenic -5843 ENSMUSG00000092077.2 ENSMUSG00000092077 ENSMUST00000058046 Olfr101 protein_coding Interval_67429 chr16 48597341 48597593 + 0 NA intron (ENSMUSG00000022652.7, intron 1 of 5) protein_coding-intron (ENSMUSG00000022652.7, intron 20 of 26) 117835 ENSMUSG00000022652.7 ENSMUSG00000022652 ENSMUST00000232195 Morc1 protein_coding Interval_145720 chr7 37769004 37770901 + 0 NA promoter-TSS (ENSMUSG00000043456.17) protein_coding-promoter-TSS (ENSMUSG00000043456.17) 54395 ENSMUSG00000064591.1 ENSMUSG00000064591 ENSMUST00000082657 Gm22302 snRNA Interval_4966 chr1 83038050 83039286 + 0 NA promoter-TSS (ENSMUSG00000038496.16) protein_coding-promoter-TSS (ENSMUSG00000038496.16) -237 ENSMUSG00000038496.16 ENSMUSG00000038496 ENSMUST00000164473 Slc19a3 protein_coding Interval_134941 chr6 33980844 33981202 + 0 NA Intergenic Intergenic 11388 ENSMUSG00000087441.1 ENSMUSG00000087441 ENSMUST00000155496 Gm13853 lincRNA Interval_4237 chr1 72066054 72066273 + 0 NA Intergenic Intergenic -21694 ENSMUSG00000101496.1 ENSMUSG00000101496 ENSMUST00000189382 Gm8885 processed_pseudogene Interval_161862 chr8 123271249 123272784 + 0 NA intron (ENSMUSG00000032815.16, intron 2 of 5) protein_coding-intron (ENSMUSG00000032815.16, intron 36 of 42) -1720 ENSMUSG00000032815.16 ENSMUSG00000032815 ENSMUST00000150318 Fanca protein_coding Interval_14196 chr10 28647313 28647676 + 0 NA Intergenic Intergenic 60501 ENSMUSG00000019889.10 ENSMUSG00000019889 ENSMUST00000220404 Ptprk protein_coding Interval_3116 chr1 53620259 53620481 + 0 NA intron (ENSMUSG00000096141.2, intron 18 of 65) protein_coding-intron (ENSMUSG00000096141.2, intron 18 of 65) 86414 ENSMUSG00000096141.2 ENSMUSG00000096141 ENSMUST00000189677 Dnah7a protein_coding Interval_144970 chr7 29172367 29172748 + 0 NA exon (ENSMUSG00000031493.10, exon 2 of 3) protein_coding-exon (ENSMUSG00000031493.10, exon 2 of 3) -2146 ENSMUSG00000037239.8 ENSMUSG00000037239 ENSMUST00000208659 Spred3 protein_coding Interval_26955 chr11 61820844 61821022 + 0 NA intron (ENSMUSG00000004798.14, intron 12 of 26) protein_coding-intron (ENSMUSG00000004798.14, intron 12 of 26) -16912 ENSMUSG00000004798.14 ENSMUSG00000004798 ENSMUST00000157049 Ulk2 protein_coding Interval_78904 chr18 21382667 21383390 + 0 NA Intergenic Intergenic -2097 ENSMUSG00000096341.1 ENSMUSG00000096341 ENSMUST00000093714 Gm22886 snRNA Interval_32121 chr11 105345478 105345701 + 0 NA intron (ENSMUSG00000020695.14, intron 20 of 29) protein_coding-intron (ENSMUSG00000020695.14, intron 20 of 29) 4757 ENSMUSG00000020695.14 ENSMUSG00000020695 ENSMUST00000151135 Mrc2 protein_coding Interval_164786 chr9 41867144 41868108 + 0 NA intron (ENSMUSG00000111511.1, intron 1 of 3) processed_transcript-intron (ENSMUSG00000111511.1, intron 1 of 3) -8693 ENSMUSG00000111156.1 ENSMUSG00000111156 ENSMUST00000213590 Gm48814 bidirectional_promoter_lncRNA Interval_144952 chr7 29076419 29077418 + 0 NA exon (ENSMUSG00000030592.18, exon 41 of 106) protein_coding-exon (ENSMUSG00000030592.18, exon 41 of 106) 5281 ENSMUSG00000097079.2 ENSMUSG00000097079 ENSMUST00000209109 Gm26604 antisense Interval_27762 chr11 69837200 69838961 + 0 NA promoter-TSS (ENSMUSG00000070394.10) protein_coding-promoter-TSS (ENSMUSG00000070394.10) -475 ENSMUSG00000070394.10 ENSMUSG00000070394 ENSMUST00000128281 Tmem256 protein_coding Interval_132072 chr5 142619672 142620518 + 0 NA Intergenic Intergenic 2736 ENSMUSG00000104978.1 ENSMUSG00000104978 ENSMUST00000197356 Gm31274 processed_pseudogene Interval_39734 chr12 95822303 95822737 + 0 NA Intergenic Intergenic 88410 ENSMUSG00000112067.1 ENSMUSG00000112067 ENSMUST00000217888 Gm48015 TEC Interval_17219 chr10 75065642 75066155 + 0 NA intron (ENSMUSG00000009681.10, intron 1 of 22) protein_coding-intron (ENSMUSG00000009681.10, intron 1 of 22) 28809 ENSMUSG00000020175.15 ENSMUSG00000020175 ENSMUST00000151432 Rab36 protein_coding Interval_85189 chr19 23537687 23538515 + 0 NA Intergenic Intergenic -67797 ENSMUSG00000117944.1 ENSMUSG00000117944 ENSMUST00000237913 Gm50422 processed_pseudogene Interval_60819 chr15 76948209 76949342 + 0 NA promoter-TSS (ENSMUSG00000063236.6) protein_coding-promoter-TSS (ENSMUSG00000063236.6) 246 ENSMUSG00000063236.6 ENSMUSG00000063236 ENSMUST00000229229 1110038F14Rik protein_coding Interval_3617 chr1 60016771 60018183 + 0 NA intron (ENSMUSG00000026018.12, intron 3 of 10) protein_coding-intron (ENSMUSG00000026018.12, intron 3 of 10) 25645 ENSMUSG00000026018.12 ENSMUSG00000026018 ENSMUST00000186970 Ica1l protein_coding Interval_82632 chr18 75531093 75531979 + 0 NA intron (ENSMUSG00000052928.9, intron 7 of 11) protein_coding-intron (ENSMUSG00000052928.9, intron 7 of 11) 16891 ENSMUSG00000097712.1 ENSMUSG00000097712 ENSMUST00000181913 Gm10532 antisense Interval_47104 chr13 75793837 75794920 + 0 NA Intergenic Intergenic -8328 ENSMUSG00000113409.1 ENSMUSG00000113409 ENSMUST00000223406 Gm8288 processed_pseudogene Interval_173548 chrX 99135002 99136855 + 0 NA promoter-TSS (ENSMUSG00000031217.8) protein_coding-promoter-TSS (ENSMUSG00000031217.8) -2203 ENSMUSG00000031217.8 ENSMUSG00000031217 ENSMUST00000151750 Efnb1 protein_coding Interval_170737 chr9 110434393 110434944 + 0 NA intron (ENSMUSG00000054792.15, intron 7 of 9) protein_coding-intron (ENSMUSG00000054792.15, intron 7 of 9) 14921 ENSMUSG00000032484.8 ENSMUSG00000032484 ENSMUST00000035061 Ngp protein_coding Interval_47174 chr13 77085355 77085576 + 0 NA intron (ENSMUSG00000021597.16, intron 12 of 20) protein_coding-intron (ENSMUSG00000021597.16, intron 12 of 20) 50000 ENSMUSG00000021597.16 ENSMUSG00000021597 ENSMUST00000162320 Slf1 protein_coding Interval_18645 chr10 88773633 88774414 + 0 NA intron (ENSMUSG00000004356.8, intron 35 of 61) protein_coding-intron (ENSMUSG00000004356.8, intron 35 of 61) -42922 ENSMUSG00000069540.4 ENSMUSG00000069540 ENSMUST00000092231 Gm4925 transcribed_processed_pseudogene Interval_158596 chr8 84681221 84681421 + 0 NA intron (ENSMUSG00000001910.5, intron 1 of 5) protein_coding-intron (ENSMUSG00000001910.5, intron 1 of 5) -5018 ENSMUSG00000001909.16 ENSMUSG00000001909 ENSMUST00000177260 Trmt1 protein_coding Interval_22483 chr11 10967250 10967504 + 0 NA Intergenic Intergenic -149108 ENSMUSG00000050830.17 ENSMUSG00000050830 ENSMUST00000154155 Vwc2 protein_coding Interval_51578 chr14 30473315 30474107 + 0 NA intron (ENSMUSG00000015968.18, intron 1 of 1) protein_coding-intron (ENSMUSG00000015968.18, intron 1 of 46) -49996 ENSMUSG00000021962.9 ENSMUSG00000021962 ENSMUST00000225934 Dcp1a protein_coding Interval_25610 chr11 50194275 50194991 + 0 NA intron (ENSMUSG00000020381.10, intron 5 of 5) protein_coding-intron (ENSMUSG00000020381.10, intron 4 of 6) 12686 ENSMUSG00000015837.15 ENSMUSG00000015837 ENSMUST00000154805 Sqstm1 protein_coding Interval_114064 chr4 62916943 62918157 + 0 NA Intergenic Intergenic -21791 ENSMUSG00000087967.1 ENSMUSG00000087967 ENSMUST00000157342 Gm25391 snoRNA Interval_27080 chr11 62744052 62744557 + 0 NA Intergenic Intergenic -5548 ENSMUSG00000098292.1 ENSMUSG00000098292 ENSMUST00000175753 Gm27194 lincRNA Interval_31731 chr11 102510322 102510827 + 0 NA intron (ENSMUSG00000034621.14, intron 4 of 5) protein_coding-intron (ENSMUSG00000034621.14, intron 4 of 5) -17965 ENSMUSG00000082487.1 ENSMUSG00000082487 ENSMUST00000117568 Gm11628 processed_pseudogene Interval_124557 chr5 50697719 50698317 + 0 NA Intergenic Intergenic 18302 ENSMUSG00000106038.1 ENSMUSG00000106038 ENSMUST00000199640 Gm4962 transcribed_processed_pseudogene Interval_42603 chr13 16607238 16607439 + 0 NA Intergenic Intergenic 32152 ENSMUSG00000113862.1 ENSMUSG00000113862 ENSMUST00000221660 Gm7537 processed_pseudogene Interval_121396 chr4 155508835 155509025 + 0 NA intron (ENSMUSG00000029064.15, intron 1 of 5) protein_coding-intron (ENSMUSG00000029064.15, intron 1 of 11) -6224 ENSMUSG00000082429.1 ENSMUSG00000082429 ENSMUST00000117233 Gm13171 processed_pseudogene Interval_2883 chr1 47456029 47456547 + 0 NA Intergenic Intergenic 10837 ENSMUSG00000098876.1 ENSMUSG00000098876 ENSMUST00000183639 Mir6350 miRNA Interval_117095 chr4 119492094 119493159 + 0 NA promoter-TSS (ENSMUSG00000048899.8) protein_coding-promoter-TSS (ENSMUSG00000048899.8) -117 ENSMUSG00000048899.8 ENSMUSG00000048899 ENSMUST00000126728 Rimkla protein_coding Interval_45727 chr13 57316383 57316774 + 0 NA Intergenic Intergenic 39900 ENSMUSG00000114411.1 ENSMUSG00000114411 ENSMUST00000224461 Gm48176 processed_pseudogene Interval_29221 chr11 81648608 81648814 + 0 NA intron (ENSMUSG00000020704.13, intron 1 of 9) protein_coding-intron (ENSMUSG00000020704.13, intron 1 of 9) 61350 ENSMUSG00000087534.1 ENSMUSG00000087534 ENSMUST00000156193 Gm11418 antisense Interval_86956 chr19 45176428 45177700 + 0 NA Intergenic Intergenic -17760 ENSMUSG00000092346.1 ENSMUSG00000092346 ENSMUST00000173437 Tlx1os antisense Interval_27275 chr11 65161855 65163099 + 0 NA promoter-TSS (ENSMUSG00000033389.16) protein_coding-promoter-TSS (ENSMUSG00000033389.16) 2518 ENSMUSG00000118601.1 ENSMUSG00000118601 ENSMUST00000239306 AL663045.1 antisense Interval_59857 chr15 59836445 59836636 + 0 NA Intergenic Intergenic -41581 ENSMUSG00000115426.1 ENSMUSG00000115426 ENSMUST00000228865 Gm19510 lincRNA Interval_54150 chr14 65753823 65754155 + 0 NA intron (ENSMUSG00000022032.14, intron 7 of 8) protein_coding-intron (ENSMUSG00000022032.14, intron 7 of 8) -51948 ENSMUSG00000022033.9 ENSMUSG00000022033 ENSMUST00000139644 Pbk protein_coding Interval_52905 chr14 51984218 51986283 + 0 NA intron (ENSMUSG00000004562.16, intron 1 of 22) protein_coding-intron (ENSMUSG00000004562.16, intron 1 of 23) 3577 ENSMUSG00000097633.2 ENSMUSG00000097633 ENSMUST00000181008 Gm16617 antisense Interval_87206 chr19 46875843 46877010 + 0 NA intron (ENSMUSG00000064105.13, intron 3 of 4) protein_coding-intron (ENSMUSG00000064105.13, intron 5 of 6) -5069 ENSMUSG00000117814.1 ENSMUSG00000117814 ENSMUST00000236822 Gm50431 lincRNA Interval_55119 chr14 78275198 78275630 + 0 NA Intergenic Intergenic -29103 ENSMUSG00000080402.1 ENSMUSG00000080402 ENSMUST00000116752 Gm23652 miRNA Interval_101579 chr3 7102819 7103255 + 0 NA Intergenic Intergenic 90173 ENSMUSG00000104274.1 ENSMUSG00000104274 ENSMUST00000193158 Gm8823 processed_pseudogene Interval_4194 chr1 71550584 71551346 + 0 NA Intergenic Intergenic -6214 ENSMUSG00000026192.13 ENSMUSG00000026192 ENSMUST00000154855 Atic protein_coding Interval_172493 chrX 21360801 21361946 + 0 NA exon (ENSMUSG00000051537.9, exon 1 of 2) transcribed_processed_pseudogene-exon (ENSMUSG00000051537.9, exon 1 of 2) 433 ENSMUSG00000051537.9 ENSMUSG00000051537 ENSMUST00000132683 Gm5124 transcribed_processed_pseudogene Interval_90174 chr2 28743736 28744302 + 0 NA intron (ENSMUSG00000026807.8, intron 2 of 2) protein_coding-intron (ENSMUSG00000026807.8, intron 10 of 12) 1769 ENSMUSG00000026807.8 ENSMUSG00000026807 ENSMUST00000137588 Ak8 protein_coding Interval_33269 chr11 115569548 115570572 + 0 NA promoter-TSS (ENSMUSG00000020739.11) protein_coding-promoter-TSS (ENSMUSG00000020739.11) -55 ENSMUSG00000020739.11 ENSMUSG00000020739 ENSMUST00000134209 Nup85 protein_coding Interval_87125 chr19 46321416 46321889 + 0 NA TTS (ENSMUSG00000037126.16) protein_coding-TTS (ENSMUSG00000037126.16) -6535 ENSMUSG00000025226.11 ENSMUSG00000025226 ENSMUST00000177667 Fbxl15 protein_coding Interval_90536 chr2 31018224 31019601 + 0 NA promoter-TSS (ENSMUSG00000026854.16) protein_coding-promoter-TSS (ENSMUSG00000026854.16) 36578 ENSMUSG00000026854.16 ENSMUSG00000026854 ENSMUST00000127776 Usp20 protein_coding Interval_128844 chr5 115556187 115556967 + 0 NA TTS (ENSMUSG00000029528.19) protein_coding-TTS (ENSMUSG00000029528.19) -2960 ENSMUSG00000067274.10 ENSMUSG00000067274 ENSMUST00000155584 Rplp0 protein_coding Interval_50200 chr14 9632230 9633375 + 0 NA intron (ENSMUSG00000060579.13, intron 4 of 5) protein_coding-intron (ENSMUSG00000060579.13, intron 8 of 9) -163247 ENSMUSG00000114298.1 ENSMUSG00000114298 ENSMUST00000224617 Gm48371 lincRNA Interval_142623 chr6 144341175 144341402 + 0 NA intron (ENSMUSG00000041540.16, intron 4 of 6) protein_coding-intron (ENSMUSG00000041540.16, intron 4 of 13) -131720 ENSMUSG00000041540.16 ENSMUSG00000041540 ENSMUST00000150087 Sox5 protein_coding Interval_120773 chr4 150568495 150570102 + 0 NA promoter-TSS (ENSMUSG00000085213.1) antisense-promoter-TSS (ENSMUSG00000085213.1) -754 ENSMUSG00000085213.1 ENSMUSG00000085213 ENSMUST00000128800 Gm13091 antisense Interval_75138 chr17 63849159 63850236 + 0 NA Intergenic Intergenic -13365 ENSMUSG00000000127.15 ENSMUSG00000000127 ENSMUST00000038080 Fer protein_coding Interval_1525 chr1 24719569 24719800 + 0 NA intron (ENSMUSG00000073725.8, intron 7 of 15) protein_coding-intron (ENSMUSG00000073725.8, intron 7 of 15) 41054 ENSMUSG00000073725.8 ENSMUSG00000073725 ENSMUST00000190195 Lmbrd1 protein_coding Interval_64340 chr16 10621664 10621860 + 0 NA intron (ENSMUSG00000068663.14, intron 12 of 22) protein_coding-intron (ENSMUSG00000068663.14, intron 12 of 20) 61777 ENSMUSG00000087384.1 ENSMUSG00000087384 ENSMUST00000126849 Gm15558 antisense Interval_151579 chr7 124083230 124084990 + 0 NA intron (ENSMUSG00000078591.1, intron 1 of 1) protein_coding-intron (ENSMUSG00000078591.1, intron 1 of 1) -62171 ENSMUSG00000077176.1 ENSMUSG00000077176 ENSMUST00000103988 Gm25759 snoRNA Interval_116650 chr4 116336116 116337047 + 0 NA intron (ENSMUSG00000003810.13, intron 4 of 27) protein_coding-intron (ENSMUSG00000003810.13, intron 6 of 28) 35151 ENSMUSG00000003810.13 ENSMUSG00000003810 ENSMUST00000151347 Mast2 protein_coding Interval_44079 chr13 40744153 40745107 + 0 NA Intergenic Intergenic 7062 ENSMUSG00000114597.1 ENSMUSG00000114597 ENSMUST00000224614 Gm47067 antisense Interval_5350 chr1 87794437 87795007 + 0 NA Intergenic Intergenic -8958 ENSMUSG00000056055.13 ENSMUSG00000056055 ENSMUST00000145385 Sag protein_coding Interval_17868 chr10 80494662 80497344 + 0 NA exon (ENSMUSG00000045518.8, exon 1 of 2) protein_coding-exon (ENSMUSG00000045518.8, exon 1 of 2) 1168 ENSMUSG00000045518.8 ENSMUSG00000045518 ENSMUST00000051773 Onecut3 protein_coding Interval_84682 chr19 15082653 15083110 + 0 NA Intergenic Intergenic -122115 ENSMUSG00000063586.1 ENSMUSG00000063586 ENSMUST00000072982 Gm5513 processed_pseudogene Interval_121089 chr4 152818763 152819798 + 0 NA Intergenic Intergenic 121740 ENSMUSG00000073699.3 ENSMUSG00000073699 ENSMUST00000143133 Gm833 lincRNA Interval_115578 chr4 100998315 100998524 + 0 NA intron (ENSMUSG00000028532.14, intron 26 of 26) protein_coding-intron (ENSMUSG00000028532.14, intron 26 of 26) 3709 ENSMUSG00000028532.14 ENSMUSG00000028532 ENSMUST00000136430 Cachd1 protein_coding Interval_90595 chr2 31329595 31330893 + 0 NA intron (ENSMUSG00000055632.18, intron 1 of 97) protein_coding-intron (ENSMUSG00000055632.18, intron 1 of 97) 15829 ENSMUSG00000055632.18 ENSMUSG00000055632 ENSMUST00000141294 Hmcn2 protein_coding Interval_92007 chr2 52509669 52510611 + 0 NA intron (ENSMUSG00000017412.15, intron 2 of 13) protein_coding-intron (ENSMUSG00000017412.15, intron 2 of 13) -41829 ENSMUSG00000082132.1 ENSMUSG00000082132 ENSMUST00000119519 Gm13541 processed_pseudogene Interval_72852 chr17 32675811 32676617 + 0 NA intron (ENSMUSG00000090700.2, intron 12 of 12) protein_coding-intron (ENSMUSG00000090700.2, intron 11 of 11) -9413 ENSMUSG00000073424.9 ENSMUSG00000073424 ENSMUST00000008801 Cyp4f15 protein_coding Interval_154711 chr8 22768341 22768706 + 0 NA intron (ENSMUSG00000031538.6, intron 3 of 5) protein_coding-intron (ENSMUSG00000031538.6, intron 3 of 13) 10728 ENSMUSG00000031538.6 ENSMUSG00000031538 ENSMUST00000211033 Plat protein_coding Interval_76793 chr17 84084953 84086157 + 0 NA intron (ENSMUSG00000117571.1, intron 3 of 5) lincRNA-intron (ENSMUSG00000117571.1, intron 3 of 5) 6895 ENSMUSG00000117571.1 ENSMUSG00000117571 ENSMUST00000234076 4933433H22Rik lincRNA Interval_150976 chr7 117096798 117096984 + 0 NA Intergenic Intergenic -132716 ENSMUSG00000108303.1 ENSMUSG00000108303 ENSMUST00000206031 Gm39075 lincRNA Interval_121085 chr4 152762391 152763422 + 0 NA Intergenic Intergenic 65366 ENSMUSG00000073699.3 ENSMUSG00000073699 ENSMUST00000143133 Gm833 lincRNA Interval_134330 chr6 25301809 25302238 + 0 NA Intergenic Intergenic -101972 ENSMUSG00000089442.1 ENSMUSG00000089442 ENSMUST00000158817 Gm22529 snoRNA Interval_49811 chr13 116297155 116297818 + 0 NA TTS (ENSMUSG00000042258.13) protein_coding-TTS (ENSMUSG00000042258.13) 12199 ENSMUSG00000042258.13 ENSMUSG00000042258 ENSMUST00000177469 Isl1 protein_coding Interval_36324 chr12 41221865 41222331 + 0 NA intron (ENSMUSG00000056899.10, intron 3 of 5) protein_coding-intron (ENSMUSG00000056899.10, intron 4 of 6) 125992 ENSMUSG00000113086.1 ENSMUSG00000113086 ENSMUST00000223331 Gm47376 antisense Interval_109555 chr3 144425722 144426686 + 0 NA TTS (ENSMUSG00000106416.1) processed_pseudogene-TTS (ENSMUSG00000106416.1) 1468 ENSMUSG00000106416.1 ENSMUSG00000106416 ENSMUST00000198953 Gm5857 processed_pseudogene Interval_16948 chr10 70070756 70072116 + 0 NA Intergenic Intergenic -103575 ENSMUSG00000048701.13 ENSMUSG00000048701 ENSMUST00000135607 Ccdc6 protein_coding Interval_111954 chr4 32785521 32785883 + 0 NA Intergenic Intergenic -14577 ENSMUSG00000045854.4 ENSMUSG00000045854 ENSMUST00000130321 Lyrm2 protein_coding Interval_6527 chr1 114557114 114557316 + 0 NA Intergenic Intergenic -593081 ENSMUSG00000097648.1 ENSMUSG00000097648 ENSMUST00000180837 9330185C12Rik lincRNA Interval_164067 chr9 31262477 31262686 + 0 NA Intergenic Intergenic -12240 ENSMUSG00000091003.2 ENSMUSG00000091003 ENSMUST00000164658 Gm7244 processed_pseudogene Interval_125244 chr5 65622407 65622646 + 0 NA promoter-TSS (ENSMUSG00000029202.12) protein_coding-promoter-TSS (ENSMUSG00000029202.12) -1408 ENSMUSG00000106696.1 ENSMUSG00000106696 ENSMUST00000201770 Gm42729 TEC Interval_16902 chr10 69657337 69658105 + 0 NA intron (ENSMUSG00000069601.14, intron 2 of 2) protein_coding-intron (ENSMUSG00000069601.14, intron 1 of 16) -91360 ENSMUSG00000112729.1 ENSMUSG00000112729 ENSMUST00000220152 Gm46231 processed_pseudogene Interval_115972 chr4 106691251 106691981 + 0 NA TTS (ENSMUSG00000047502.14) protein_coding-TTS (ENSMUSG00000047502.14) -12930 ENSMUSG00000025413.13 ENSMUSG00000025413 ENSMUST00000132572 Ttc4 protein_coding Interval_125975 chr5 76378585 76379688 + 0 NA Intergenic Intergenic -15348 ENSMUSG00000029236.4 ENSMUSG00000029236 ENSMUST00000031146 Nmu protein_coding Interval_75068 chr17 62850228 62850744 + 0 NA intron (ENSMUSG00000048915.12, intron 1 of 3) protein_coding-intron (ENSMUSG00000048915.12, intron 1 of 4) 30658 ENSMUSG00000048915.12 ENSMUSG00000048915 ENSMUST00000078839 Efna5 protein_coding Interval_91759 chr2 49337754 49337974 + 0 NA Intergenic Intergenic -9713 ENSMUSG00000084177.1 ENSMUSG00000084177 ENSMUST00000121639 Gm13508 processed_pseudogene Interval_148369 chr7 80825643 80826310 + 0 NA promoter-TSS (ENSMUSG00000030536.10) protein_coding-promoter-TSS (ENSMUSG00000030536.10) -22713 ENSMUSG00000030536.10 ENSMUSG00000030536 ENSMUST00000205540 Iqgap1 protein_coding Interval_54412 chr14 69029015 69030469 + 0 NA promoter-TSS (ENSMUSG00000114833.1) antisense-promoter-TSS (ENSMUSG00000114833.1) -90 ENSMUSG00000114833.1 ENSMUSG00000114833 ENSMUST00000224911 Gm41192 antisense Interval_121921 chr5 9688892 9689179 + 0 NA intron (ENSMUSG00000003974.6, intron 1 of 5) protein_coding-intron (ENSMUSG00000003974.6, intron 1 of 5) 36135 ENSMUSG00000003974.6 ENSMUSG00000003974 ENSMUST00000004076 Grm3 protein_coding Interval_57931 chr15 25554789 25556960 + 0 NA intron (ENSMUSG00000115204.1, intron 3 of 5) lincRNA-intron (ENSMUSG00000115204.1, intron 3 of 5) 37217 ENSMUSG00000115204.1 ENSMUSG00000115204 ENSMUST00000228618 Gm36642 lincRNA Interval_109855 chr3 148986447 148990810 + 0 NA promoter-TSS (ENSMUSG00000104786.1) antisense-promoter-TSS (ENSMUSG00000104786.1) -524 ENSMUSG00000104786.1 ENSMUSG00000104786 ENSMUST00000196445 Gm43573 antisense Interval_46019 chr13 60171134 60171441 + 0 NA Intergenic Intergenic -5395 ENSMUSG00000114433.1 ENSMUSG00000114433 ENSMUST00000224630 Gm48488 lincRNA Interval_83244 chr18 82963995 82965048 + 0 NA intron (ENSMUSG00000058881.13, intron 2 of 5) protein_coding-intron (ENSMUSG00000058881.13, intron 2 of 5) -43961 ENSMUSG00000118339.1 ENSMUSG00000118339 ENSMUST00000237056 4930592I03Rik processed_transcript Interval_20661 chr10 120091088 120093285 + 0 NA promoter-TSS (ENSMUSG00000020228.11) protein_coding-promoter-TSS (ENSMUSG00000020228.11) 20679 ENSMUSG00000020228.11 ENSMUSG00000020228 ENSMUST00000154501 Helb protein_coding Interval_33770 chr11 118401667 118402045 + 0 NA promoter-TSS (ENSMUSG00000033880.11) protein_coding-promoter-TSS (ENSMUSG00000033880.11) -3705 ENSMUSG00000033880.11 ENSMUSG00000033880 ENSMUST00000127054 Lgals3bp protein_coding Interval_174756 chrX 165600789 165601281 + 0 NA Intergenic Intergenic -79169 ENSMUSG00000082134.1 ENSMUSG00000082134 ENSMUST00000117309 Gm15236 processed_pseudogene Interval_98867 chr2 155663081 155664537 + 0 NA promoter-TSS (ENSMUSG00000038324.13) protein_coding-promoter-TSS (ENSMUSG00000038324.13) -10785 ENSMUSG00000088695.1 ENSMUSG00000088695 ENSMUST00000158070 Gm22334 snoRNA Interval_33798 chr11 118600019 118600773 + 0 NA intron (ENSMUSG00000025576.17, intron 3 of 13) protein_coding-intron (ENSMUSG00000025576.17, intron 4 of 14) -93043 ENSMUSG00000025576.17 ENSMUSG00000025576 ENSMUST00000134774 Rbfox3 protein_coding Interval_103042 chr3 34698574 34701545 + 0 NA intron (ENSMUSG00000105153.4, intron 4 of 4) lincRNA-intron (ENSMUSG00000105153.4, intron 4 of 4) 16603 ENSMUSG00000105153.4 ENSMUSG00000105153 ENSMUST00000198364 Gm3143 lincRNA Interval_114890 chr4 86737430 86737962 + 0 NA Intergenic Intergenic -36559 ENSMUSG00000038024.17 ENSMUSG00000038024 ENSMUST00000128710 Dennd4c protein_coding Interval_72094 chr17 28002596 28002850 + 0 NA promoter-TSS (ENSMUSG00000117263.1) antisense-promoter-TSS (ENSMUSG00000117263.1) -361 ENSMUSG00000117263.1 ENSMUSG00000117263 ENSMUST00000233367 Gm35290 antisense Interval_59386 chr15 52027473 52028424 + 0 NA Intergenic Intergenic -5421 ENSMUSG00000115238.1 ENSMUSG00000115238 ENSMUST00000228163 Gm19236 processed_pseudogene Interval_27758 chr11 69816465 69817636 + 0 NA exon (ENSMUSG00000044084.2, exon 3 of 3) protein_coding-exon (ENSMUSG00000044084.2, exon 3 of 3) 1415 ENSMUSG00000044084.2 ENSMUSG00000044084 ENSMUST00000056941 Spem2 protein_coding Interval_67920 chr16 59533947 59534571 + 0 NA intron (ENSMUSG00000022723.16, intron 12 of 21) protein_coding-intron (ENSMUSG00000022723.16, intron 9 of 18) -4068 ENSMUSG00000022723.16 ENSMUSG00000022723 ENSMUST00000139989 Crybg3 protein_coding Interval_130515 chr5 128516882 128517748 + 0 NA intron (ENSMUSG00000104980.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000104980.1, intron 1 of 2) 319 ENSMUSG00000104980.1 ENSMUSG00000104980 ENSMUST00000199120 4930573I07Rik lincRNA Interval_18980 chr10 93542177 93543200 + 0 NA intron (ENSMUSG00000036168.15, intron 1 of 15) protein_coding-intron (ENSMUSG00000036168.15, intron 1 of 15) -2655 ENSMUSG00000015890.2 ENSMUSG00000015890 ENSMUST00000016034 Amdhd1 protein_coding Interval_105315 chr3 84827089 84827437 + 0 NA intron (ENSMUSG00000028086.15, intron 1 of 2) protein_coding-intron (ENSMUSG00000028086.15, intron 1 of 13) 11497 ENSMUSG00000028086.15 ENSMUSG00000028086 ENSMUST00000029727 Fbxw7 protein_coding Interval_104155 chr3 59181281 59181567 + 0 NA intron (ENSMUSG00000051431.7, intron 2 of 2) protein_coding-intron (ENSMUSG00000056476.13, intron 14 of 42) 13680 ENSMUSG00000051431.7 ENSMUSG00000051431 ENSMUST00000056898 Gpr87 protein_coding Interval_173637 chrX 101338481 101338801 + 0 NA Intergenic Intergenic 39447 ENSMUSG00000031302.16 ENSMUSG00000031302 ENSMUST00000144860 Nlgn3 protein_coding Interval_372 chr1 4666879 4667075 + 0 NA Intergenic Intergenic 22426 ENSMUSG00000098104.1 ENSMUSG00000098104 ENSMUST00000182774 Gm6085 processed_pseudogene Interval_154197 chr8 13350561 13351089 + 0 NA intron (ENSMUSG00000038482.11, intron 1 of 3) protein_coding-intron (ENSMUSG00000038482.11, intron 1 of 10) 12004 ENSMUSG00000038482.11 ENSMUSG00000038482 ENSMUST00000209945 Tfdp1 protein_coding Interval_146655 chr7 49212833 49213099 + 0 NA intron (ENSMUSG00000052512.17, intron 2 of 39) protein_coding-intron (ENSMUSG00000052512.17, intron 2 of 39) 17425 ENSMUSG00000103834.1 ENSMUSG00000103834 ENSMUST00000195677 Gm37613 TEC Interval_95613 chr2 112818829 112819057 + 0 NA intron (ENSMUSG00000057378.15, intron 38 of 103) protein_coding-intron (ENSMUSG00000057378.15, intron 38 of 102) -162395 ENSMUSG00000057378.15 ENSMUSG00000057378 ENSMUST00000208135 Ryr3 protein_coding Interval_21127 chr10 126757853 126758417 + 0 NA Intergenic Intergenic 35575 ENSMUSG00000112832.1 ENSMUSG00000112832 ENSMUST00000218870 4930484H19Rik lincRNA Interval_16156 chr10 61086056 61087616 + 0 NA Intergenic Intergenic -2495 ENSMUSG00000020098.7 ENSMUSG00000020098 ENSMUST00000020298 Pcbd1 protein_coding Interval_90799 chr2 32667569 32668118 + 0 NA intron (ENSMUSG00000026814.16, intron 2 of 14) protein_coding-intron (ENSMUSG00000026814.16, intron 2 of 14) -5000 ENSMUSG00000026814.16 ENSMUSG00000026814 ENSMUST00000156306 Eng protein_coding Interval_160113 chr8 106526972 106529083 + 0 NA intron (ENSMUSG00000061048.8, intron 2 of 15) protein_coding-intron (ENSMUSG00000061048.8, intron 2 of 15) 17136 ENSMUSG00000061048.8 ENSMUSG00000061048 ENSMUST00000080797 Cdh3 protein_coding Interval_171512 chr9 118975294 118976117 + 0 NA intron (ENSMUSG00000047409.13, intron 1 of 5) protein_coding-intron (ENSMUSG00000047409.13, intron 1 of 7) 45838 ENSMUSG00000047409.13 ENSMUSG00000047409 ENSMUST00000174132 Ctdspl protein_coding Interval_130182 chr5 124788863 124789099 + 0 NA intron (ENSMUSG00000038011.15, intron 38 of 77) protein_coding-intron (ENSMUSG00000038011.15, intron 39 of 78) 2428 ENSMUSG00000038011.15 ENSMUSG00000038011 ENSMUST00000196708 Dnah10 protein_coding Interval_114914 chr4 86903493 86905379 + 0 NA intron (ENSMUSG00000038007.14, intron 4 of 5) protein_coding-intron (ENSMUSG00000038007.14, intron 4 of 5) -26255 ENSMUSG00000038007.14 ENSMUSG00000038007 ENSMUST00000135874 Acer2 protein_coding Interval_158457 chr8 83829089 83830452 + 0 NA Intergenic Intergenic -70965 ENSMUSG00000013033.16 ENSMUSG00000013033 ENSMUST00000131018 Adgrl1 protein_coding Interval_81514 chr18 61302552 61302829 + 0 NA exon (ENSMUSG00000033871.14, exon 11 of 13) protein_coding-exon (ENSMUSG00000033871.14, exon 11 of 13) 27667 ENSMUSG00000024575.16 ENSMUSG00000024575 ENSMUST00000135688 Pde6a protein_coding Interval_67649 chr16 55474686 55474965 + 0 NA Intergenic Intergenic -19906 ENSMUSG00000093292.1 ENSMUSG00000093292 ENSMUST00000175551 Mir5118 miRNA Interval_5655 chr1 90592547 90593269 + 0 NA Intergenic Intergenic -10568 ENSMUSG00000034432.11 ENSMUSG00000034432 ENSMUST00000186882 Cops8 protein_coding Interval_28049 chr11 72465047 72465303 + 0 NA intron (ENSMUSG00000040447.15, intron 2 of 3) protein_coding-intron (ENSMUSG00000040447.15, intron 2 of 12) -8825 ENSMUSG00000040447.15 ENSMUSG00000040447 ENSMUST00000147418 Spns2 protein_coding Interval_77649 chr17 93549376 93549923 + 0 NA Intergenic Intergenic 131016 ENSMUSG00000117514.1 ENSMUSG00000117514 ENSMUST00000234106 Gm50002 processed_pseudogene Interval_45937 chr13 59467461 59469393 + 0 NA intron (ENSMUSG00000021557.15, intron 2 of 5) protein_coding-intron (ENSMUSG00000021557.15, intron 22 of 25) -3139 ENSMUSG00000021557.15 ENSMUSG00000021557 ENSMUST00000163284 Agtpbp1 protein_coding Interval_58422 chr15 34392018 34392370 + 0 NA intron (ENSMUSG00000022324.15, intron 6 of 13) protein_coding-intron (ENSMUSG00000022324.15, intron 6 of 18) -34322 ENSMUSG00000094447.2 ENSMUSG00000094447 ENSMUST00000179647 9430069I07Rik protein_coding Interval_90185 chr2 28863894 28864252 + 0 NA intron (ENSMUSG00000026806.15, intron 14 of 19) protein_coding-intron (ENSMUSG00000026806.15, intron 14 of 19) 6932 ENSMUSG00000026806.15 ENSMUSG00000026806 ENSMUST00000152685 Ddx31 protein_coding Interval_118074 chr4 128789507 128790225 + 0 NA exon (ENSMUSG00000028799.15, exon 3 of 8) protein_coding-exon (ENSMUSG00000028799.15, exon 3 of 8) 16179 ENSMUSG00000028799.15 ENSMUSG00000028799 ENSMUST00000138371 Zfp362 protein_coding Interval_6576 chr1 117406819 117407065 + 0 NA Intergenic Intergenic -13410 ENSMUSG00000101154.1 ENSMUSG00000101154 ENSMUST00000189740 Gm17777 processed_pseudogene Interval_81762 chr18 64494972 64495305 + 0 NA Intergenic Intergenic -6197 ENSMUSG00000024588.9 ENSMUSG00000024588 ENSMUST00000235843 Fech protein_coding Interval_46386 chr13 64379572 64380431 + 0 NA Intergenic Intergenic -9695 ENSMUSG00000021477.9 ENSMUSG00000021477 ENSMUST00000220617 Ctsl protein_coding Interval_82968 chr18 80073351 80073649 + 0 NA intron (ENSMUSG00000056214.9, intron 1 of 2) protein_coding-intron (ENSMUSG00000056214.9, intron 1 of 2) -13306 ENSMUSG00000118269.1 ENSMUSG00000118269 ENSMUST00000235723 Gm50195 TEC Interval_57581 chr15 12549256 12551148 + 0 NA promoter-TSS (ENSMUSG00000022197.16) protein_coding-promoter-TSS (ENSMUSG00000022197.16) 22328 ENSMUSG00000095516.1 ENSMUSG00000095516 ENSMUST00000179085 Gm24135 miRNA Interval_169842 chr9 102417044 102417480 + 0 NA Intergenic Intergenic 44144 ENSMUSG00000088138.1 ENSMUSG00000088138 ENSMUST00000157513 Gm22894 snRNA Interval_10009 chr1 164993271 164994639 + 0 NA Intergenic Intergenic -30390 ENSMUSG00000080561.1 ENSMUSG00000080561 ENSMUST00000116911 Gm26042 miRNA Interval_27649 chr11 69276223 69276446 + 0 NA Intergenic Intergenic -17817 ENSMUSG00000087003.1 ENSMUSG00000087003 ENSMUST00000132834 Cntrobos antisense Interval_115759 chr4 103417181 103417384 + 0 NA intron (ENSMUSG00000086136.1, intron 3 of 3) lincRNA-intron (ENSMUSG00000086136.1, intron 1 of 2) 34782 ENSMUSG00000086136.1 ENSMUSG00000086136 ENSMUST00000150345 Gm12718 lincRNA Interval_91421 chr2 38672162 38672773 + 0 NA promoter-TSS (ENSMUSG00000083722.2) transcribed_unitary_pseudogene-promoter-TSS (ENSMUSG00000083722.2) 239 ENSMUSG00000083722.2 ENSMUSG00000083722 ENSMUST00000152645 Adgrd2-ps transcribed_unitary_pseudogene Interval_121990 chr5 13080808 13081473 + 0 NA exon (ENSMUSG00000104577.1, exon 1 of 1) processed_pseudogene-exon (ENSMUSG00000104577.1, exon 1 of 1) 312 ENSMUSG00000104577.1 ENSMUSG00000104577 ENSMUST00000196100 Gm6641 processed_pseudogene Interval_148792 chr7 87566448 87566923 + 0 NA Intergenic Intergenic -17690 ENSMUSG00000049583.15 ENSMUSG00000049583 ENSMUST00000138732 Grm5 protein_coding Interval_69691 chr16 95585206 95586399 + 0 NA intron (ENSMUSG00000040732.20, intron 1 of 10) protein_coding-intron (ENSMUSG00000040732.20, intron 1 of 10) -55437 ENSMUSG00000040732.20 ENSMUSG00000040732 ENSMUST00000121809 Erg protein_coding Interval_92694 chr2 62707000 62707273 + 0 NA intron (ENSMUSG00000059742.10, intron 14 of 15) protein_coding-intron (ENSMUSG00000059742.10, intron 14 of 15) 20938 ENSMUSG00000026893.4 ENSMUSG00000026893 ENSMUST00000148083 Gca protein_coding Interval_104119 chr3 58762438 58763209 + 0 NA intron (ENSMUSG00000097725.4, intron 8 of 8) lincRNA-intron (ENSMUSG00000097725.4, intron 3 of 5) 49120 ENSMUSG00000101860.4 ENSMUSG00000101860 ENSMUST00000191233 Mindy4b-ps protein_coding Interval_167417 chr9 68895963 68896248 + 0 NA intron (ENSMUSG00000032238.17, intron 1 of 5) protein_coding-intron (ENSMUSG00000032238.17, intron 1 of 10) 242214 ENSMUSG00000032238.17 ENSMUSG00000032238 ENSMUST00000113624 Rora protein_coding Interval_35231 chr12 18556415 18556638 + 0 NA Intergenic Intergenic -3089 ENSMUSG00000113604.1 ENSMUSG00000113604 ENSMUST00000222589 Gm19786 unprocessed_pseudogene Interval_164476 chr9 37358982 37360351 + 0 NA Intergenic Intergenic -7970 ENSMUSG00000046240.8 ENSMUSG00000046240 ENSMUST00000215951 Hepacam protein_coding Interval_153483 chr7 145135796 145137097 + 0 NA Intergenic Intergenic -26550 ENSMUSG00000108967.1 ENSMUSG00000108967 ENSMUST00000207878 Gm45181 lincRNA Interval_143356 chr7 6098297 6098609 + 0 NA intron (ENSMUSG00000034690.13, intron 6 of 8) protein_coding-intron (ENSMUSG00000034690.13, intron 7 of 9) 37946 ENSMUSG00000034690.13 ENSMUSG00000034690 ENSMUST00000207267 Nlrp4c protein_coding Interval_4797 chr1 78846393 78846856 + 0 NA intron (ENSMUSG00000099706.1, intron 3 of 3) lincRNA-intron (ENSMUSG00000099706.1, intron 3 of 3) 25366 ENSMUSG00000101324.1 ENSMUSG00000101324 ENSMUST00000186681 Gm29187 lincRNA Interval_169681 chr9 100339667 100340311 + 0 NA Intergenic Intergenic -16465 ENSMUSG00000101042.1 ENSMUSG00000101042 ENSMUST00000187644 Gm28167 lincRNA Interval_167036 chr9 64736299 64738269 + 0 NA promoter-TSS (ENSMUSG00000004771.12) protein_coding-promoter-TSS (ENSMUSG00000004771.12) -10554 ENSMUSG00000104953.1 ENSMUSG00000104953 ENSMUST00000197528 Gm47308 miRNA Interval_48285 chr13 97747394 97747733 + 0 NA promoter-TSS (ENSMUSG00000054944.7) lincRNA-promoter-TSS (ENSMUSG00000054944.7) -152 ENSMUSG00000054944.7 ENSMUSG00000054944 ENSMUST00000123535 5330416C01Rik lincRNA Interval_27309 chr11 65918101 65919098 + 0 NA intron (ENSMUSG00000056752.16, intron 14 of 30) protein_coding-intron (ENSMUSG00000056752.16, intron 51 of 68) 86596 ENSMUSG00000056752.16 ENSMUSG00000056752 ENSMUST00000142836 Dnah9 protein_coding Interval_173928 chrX 112840076 112840470 + 0 NA Intergenic Intergenic -17577 ENSMUSG00000083103.1 ENSMUSG00000083103 ENSMUST00000117144 Gm6429 processed_pseudogene Interval_143464 chr7 6998791 6999811 + 0 NA intron (ENSMUSG00000070837.5, intron 4 of 4) protein_coding-intron (ENSMUSG00000070837.5, intron 4 of 6) 3916 ENSMUSG00000070837.5 ENSMUSG00000070837 ENSMUST00000207660 Aurkc protein_coding Interval_169746 chr9 100916725 100917712 + 0 NA intron (ENSMUSG00000037286.15, intron 3 of 7) protein_coding-intron (ENSMUSG00000037286.15, intron 22 of 32) -38551 ENSMUSG00000037286.15 ENSMUSG00000037286 ENSMUST00000191345 Stag1 protein_coding Interval_88281 chr2 3327140 3327598 + 0 NA TTS (ENSMUSG00000026643.16) protein_coding-TTS (ENSMUSG00000026643.16) 5274 ENSMUSG00000049950.6 ENSMUSG00000049950 ENSMUST00000062672 Rpp38 protein_coding Interval_133165 chr5 150272165 150272572 + 0 NA intron (ENSMUSG00000056602.12, intron 1 of 60) protein_coding-intron (ENSMUSG00000056602.12, intron 1 of 60) -23020 ENSMUSG00000056602.12 ENSMUSG00000056602 ENSMUST00000201628 Fry protein_coding Interval_17192 chr10 74680503 74680898 + 0 NA Intergenic Intergenic -140022 ENSMUSG00000112686.1 ENSMUSG00000112686 ENSMUST00000218638 Gm7034 processed_pseudogene Interval_56260 chr14 115205773 115207714 + 0 NA intron (ENSMUSG00000022112.14, intron 2 of 7) protein_coding-intron (ENSMUSG00000022112.14, intron 2 of 7) 114528 ENSMUSG00000022112.14 ENSMUSG00000022112 ENSMUST00000022707 Gpc5 protein_coding Interval_50837 chr14 20137846 20138701 + 0 NA intron (ENSMUSG00000045107.5, intron 1 of 1) protein_coding-intron (ENSMUSG00000045107.5, intron 1 of 1) 261 ENSMUSG00000045107.5 ENSMUSG00000045107 ENSMUST00000226090 Saysd1 protein_coding Interval_7248 chr1 128222848 128223567 + 0 NA intron (ENSMUSG00000056211.13, intron 3 of 7) protein_coding-intron (ENSMUSG00000056211.13, intron 22 of 26) -20757 ENSMUSG00000026353.9 ENSMUSG00000026353 ENSMUST00000189895 Ubxn4 protein_coding Interval_4015 chr1 66478984 66479230 + 0 NA intron (ENSMUSG00000055567.18, intron 4 of 63) protein_coding-intron (ENSMUSG00000055567.18, intron 4 of 64) 10660 ENSMUSG00000055567.18 ENSMUSG00000055567 ENSMUST00000152844 Unc80 protein_coding Interval_68909 chr16 88392894 88393557 + 0 NA intron (ENSMUSG00000116885.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000116885.1, intron 1 of 1) -11529 ENSMUSG00000116754.1 ENSMUSG00000116754 ENSMUST00000231384 Gm33255 lincRNA Interval_6916 chr1 120629400 120630679 + 0 NA intron (ENSMUSG00000099957.4, intron 1 of 6) lincRNA-intron (ENSMUSG00000099957.4, intron 1 of 6) 8299 ENSMUSG00000099957.4 ENSMUSG00000099957 ENSMUST00000186982 2610027F03Rik lincRNA Interval_155046 chr8 25934337 25935073 + 0 NA intron (ENSMUSG00000031576.16, intron 7 of 7) protein_coding-intron (ENSMUSG00000031576.16, intron 26 of 26) 39348 ENSMUSG00000037260.8 ENSMUSG00000037260 ENSMUST00000209420 Hgsnat protein_coding Interval_26808 chr11 60739815 60741089 + 0 NA exon (ENSMUSG00000002814.15, exon 19 of 19) protein_coding-exon (ENSMUSG00000002814.15, exon 19 of 19) 4591 ENSMUSG00000089581.1 ENSMUSG00000089581 ENSMUST00000158956 Gm23341 snRNA Interval_50276 chr14 11581256 11581592 + 0 NA intron (ENSMUSG00000021745.14, intron 1 of 3) protein_coding-intron (ENSMUSG00000021745.14, intron 1 of 29) -60654 ENSMUSG00000114849.1 ENSMUSG00000114849 ENSMUST00000224543 Gm48595 lincRNA Interval_107501 chr3 108154374 108154795 + 0 NA intron (ENSMUSG00000046793.8, intron 1 of 2) protein_coding-intron (ENSMUSG00000046793.8, intron 1 of 1) 298 ENSMUSG00000046793.8 ENSMUSG00000046793 ENSMUST00000116284 Gpr61 protein_coding Interval_132843 chr5 148272808 148273055 + 0 NA intron (ENSMUSG00000029651.16, intron 1 of 7) protein_coding-intron (ENSMUSG00000029651.16, intron 1 of 6) 36939 ENSMUSG00000029651.16 ENSMUSG00000029651 ENSMUST00000085554 Mtus2 protein_coding Interval_134218 chr6 23154005 23154925 + 0 NA Intergenic Intergenic 2155 ENSMUSG00000117306.1 ENSMUSG00000117306 ENSMUST00000233718 Gm8945 processed_pseudogene Interval_72804 chr17 32267477 32267893 + 0 NA intron (ENSMUSG00000024002.18, intron 1 of 10) protein_coding-intron (ENSMUSG00000024002.18, intron 1 of 19) 16448 ENSMUSG00000024002.18 ENSMUSG00000024002 ENSMUST00000230982 Brd4 protein_coding Interval_47979 chr13 94829985 94830346 + 0 NA intron (ENSMUSG00000042043.6, intron 1 of 3) protein_coding-intron (ENSMUSG00000042043.6, intron 1 of 3) 12431 ENSMUSG00000042043.6 ENSMUSG00000042043 ENSMUST00000220561 Tbca protein_coding Interval_77773 chr18 3401950 3403655 + 0 NA intron (ENSMUSG00000024231.15, intron 2 of 8) protein_coding-intron (ENSMUSG00000024231.15, intron 2 of 19) 19570 ENSMUSG00000024231.15 ENSMUSG00000024231 ENSMUST00000159443 Cul2 protein_coding Interval_116723 chr4 116853995 116854634 + 0 NA Intergenic Intergenic 1650 ENSMUSG00000082841.1 ENSMUSG00000082841 ENSMUST00000119601 Gm12994 processed_pseudogene Interval_103055 chr3 34754986 34758168 + 0 NA Intergenic Intergenic -15498 ENSMUSG00000106519.1 ENSMUSG00000106519 ENSMUST00000197492 Gm38509 lincRNA Interval_54946 chr14 76425458 76426796 + 0 NA intron (ENSMUSG00000022010.19, intron 3 of 4) protein_coding-intron (ENSMUSG00000022010.19, intron 1 of 2) 7299 ENSMUSG00000022010.19 ENSMUSG00000022010 ENSMUST00000133224 Tsc22d1 protein_coding Interval_66910 chr16 38475820 38477519 + 0 NA intron (ENSMUSG00000075122.5, intron 2 of 3) protein_coding-intron (ENSMUSG00000075122.5, intron 2 of 4) 17551 ENSMUSG00000075122.5 ENSMUSG00000075122 ENSMUST00000232409 Cd80 protein_coding Interval_104338 chr3 63666994 63667661 + 0 NA Intergenic Intergenic -102885 ENSMUSG00000088360.1 ENSMUSG00000088360 ENSMUST00000157735 Gm23500 snRNA Interval_129135 chr5 117641711 117641915 + 0 NA intron (ENSMUSG00000061578.8, intron 5 of 20) protein_coding-intron (ENSMUSG00000061578.8, intron 5 of 20) 121114 ENSMUSG00000107199.1 ENSMUSG00000107199 ENSMUST00000201553 Gm42550 TEC Interval_115667 chr4 101883399 101884323 + 0 NA promoter-TSS (ENSMUSG00000081045.1) unprocessed_pseudogene-promoter-TSS (ENSMUSG00000081045.1) -179 ENSMUSG00000081045.1 ENSMUSG00000081045 ENSMUST00000118645 Gm12797 unprocessed_pseudogene Interval_143830 chr7 16598426 16599050 + 0 NA intron (ENSMUSG00000058230.12, intron 2 of 7) protein_coding-intron (ENSMUSG00000058230.12, intron 1 of 6) -15086 ENSMUSG00000100583.6 ENSMUSG00000100583 ENSMUST00000186708 Gm29443 antisense Interval_37705 chr12 71269521 71270127 + 0 NA exon (ENSMUSG00000113572.1, exon 1 of 2) processed_pseudogene-exon (ENSMUSG00000113572.1, exon 1 of 2) 533 ENSMUSG00000113572.1 ENSMUSG00000113572 ENSMUST00000221823 Gm7959 processed_pseudogene Interval_162308 chr8 126961837 126962070 + 0 NA exon (ENSMUSG00000033931.9, exon 5 of 11) protein_coding-exon (ENSMUSG00000033931.9, exon 5 of 11) 9117 ENSMUSG00000033931.9 ENSMUSG00000033931 ENSMUST00000212583 Rbm34 protein_coding Interval_1844 chr1 34106923 34108024 + 0 NA intron (ENSMUSG00000026131.20, intron 1 of 3) protein_coding-intron (ENSMUSG00000026131.20, intron 2 of 97) -9886 ENSMUSG00000105982.1 ENSMUSG00000105982 ENSMUST00000198033 Mir6896 miRNA Interval_78553 chr18 14663911 14664716 + 0 NA intron (ENSMUSG00000037013.17, intron 2 of 9) protein_coding-intron (ENSMUSG00000037013.17, intron 3 of 10) -16383 ENSMUSG00000094306.1 ENSMUSG00000094306 ENSMUST00000084007 Gm24924 snRNA Interval_123151 chr5 30148834 30149484 + 0 NA exon (ENSMUSG00000025745.12, exon 1 of 1) protein_coding-exon (ENSMUSG00000025745.12, exon 1 of 1) 384 ENSMUSG00000025745.12 ENSMUSG00000025745 ENSMUST00000196156 Hadha protein_coding Interval_144476 chr7 25358246 25359760 + 0 NA intron (ENSMUSG00000045039.9, intron 13 of 17) protein_coding-intron (ENSMUSG00000045039.9, intron 36 of 40) 10700 ENSMUSG00000063651.11 ENSMUSG00000063651 ENSMUST00000076276 Cnfn protein_coding Interval_75428 chr17 66498378 66499437 + 0 NA intron (ENSMUSG00000023460.13, intron 3 of 5) protein_coding-intron (ENSMUSG00000023460.13, intron 3 of 5) 20763 ENSMUSG00000023460.13 ENSMUSG00000023460 ENSMUST00000146279 Rab12 protein_coding Interval_83374 chr18 84681977 84682912 + 0 NA promoter-TSS (ENSMUSG00000024644.17) protein_coding-promoter-TSS (ENSMUSG00000024644.17) 1940 ENSMUSG00000024644.17 ENSMUSG00000024644 ENSMUST00000235149 Cndp2 protein_coding Interval_9598 chr1 160083065 160083412 + 0 NA Intergenic Intergenic -5296 ENSMUSG00000026729.9 ENSMUSG00000026729 ENSMUST00000169600 4930562F07Rik lincRNA Interval_5338 chr1 87706624 87707170 + 0 NA intron (ENSMUSG00000026288.14, intron 14 of 22) protein_coding-intron (ENSMUSG00000026288.14, intron 19 of 26) 30658 ENSMUSG00000026288.14 ENSMUSG00000026288 ENSMUST00000163548 Inpp5d protein_coding Interval_84853 chr19 17484185 17484796 + 0 NA intron (ENSMUSG00000024713.16, intron 24 of 37) protein_coding-intron (ENSMUSG00000024713.16, intron 24 of 37) 87053 ENSMUSG00000024712.9 ENSMUSG00000024712 ENSMUST00000146171 Rfk protein_coding Interval_92630 chr2 61725829 61726229 + 0 NA TTS (ENSMUSG00000026914.15) protein_coding-TTS (ENSMUSG00000026914.15) -18438 ENSMUSG00000081954.1 ENSMUSG00000081954 ENSMUST00000119435 Gm13626 processed_pseudogene Interval_50904 chr14 20689535 20689823 + 0 NA promoter-TSS (ENSMUSG00000098602.1) miRNA-promoter-TSS (ENSMUSG00000098602.1) -956 ENSMUSG00000098602.1 ENSMUSG00000098602 ENSMUST00000183515 Mir6946 miRNA Interval_153349 chr7 143808081 143809372 + 0 NA intron (ENSMUSG00000031090.14, intron 8 of 18) protein_coding-intron (ENSMUSG00000031090.14, intron 10 of 20) 14079 ENSMUSG00000031090.14 ENSMUSG00000031090 ENSMUST00000142749 Nadsyn1 protein_coding Interval_19476 chr10 99943059 99944041 + 0 NA Intergenic Intergenic -45071 ENSMUSG00000112299.1 ENSMUSG00000112299 ENSMUST00000219489 Gm17870 processed_pseudogene Interval_94327 chr2 88971016 88971212 + 0 NA TTS (ENSMUSG00000075111.11) protein_coding-TTS (ENSMUSG00000075111.11) 9137 ENSMUSG00000075111.11 ENSMUSG00000075111 ENSMUST00000144908 Olfr1213 protein_coding Interval_29550 chr11 84846412 84847895 + 0 NA intron (ENSMUSG00000020530.14, intron 6 of 13) protein_coding-intron (ENSMUSG00000020530.14, intron 7 of 14) 17975 ENSMUSG00000086799.1 ENSMUSG00000086799 ENSMUST00000126016 4930502E09Rik processed_transcript Interval_33783 chr11 118473236 118474590 + 0 NA Intergenic Intergenic -3028 ENSMUSG00000033857.12 ENSMUSG00000033857 ENSMUST00000168689 Engase protein_coding Interval_96083 chr2 119665740 119666118 + 0 NA exon (ENSMUSG00000082029.1, exon 1 of 1) processed_pseudogene-exon (ENSMUSG00000082029.1, exon 1 of 1) 107 ENSMUSG00000082029.1 ENSMUSG00000082029 ENSMUST00000119459 H3f3c processed_pseudogene Interval_158397 chr8 83425033 83425245 + 0 NA intron (ENSMUSG00000002190.13, intron 13 of 14) protein_coding-intron (ENSMUSG00000002190.13, intron 13 of 14) 12688 ENSMUSG00000063253.11 ENSMUSG00000063253 ENSMUST00000212849 Scoc protein_coding Interval_92272 chr2 57793767 57793986 + 0 NA Intergenic Intergenic -140054 ENSMUSG00000087964.1 ENSMUSG00000087964 ENSMUST00000157339 Gm25388 snoRNA Interval_38343 chr12 77568047 77568826 + 0 NA intron (ENSMUSG00000112392.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000112392.1, intron 1 of 1) -8658 ENSMUSG00000111896.1 ENSMUSG00000111896 ENSMUST00000218689 Gm48196 processed_pseudogene Interval_57353 chr15 9444551 9445080 + 0 NA intron (ENSMUSG00000039676.4, intron 1 of 3) protein_coding-intron (ENSMUSG00000039676.4, intron 1 of 4) 8787 ENSMUSG00000039676.4 ENSMUSG00000039676 ENSMUST00000226688 Capsl protein_coding Interval_31293 chr11 99385872 99386761 + 0 NA promoter-TSS (ENSMUSG00000019761.10) protein_coding-promoter-TSS (ENSMUSG00000019761.10) -219 ENSMUSG00000019761.10 ENSMUSG00000019761 ENSMUST00000211768 Krt10 protein_coding Interval_152068 chr7 128757801 128758062 + 0 NA intron (ENSMUSG00000055319.8, intron 6 of 18) protein_coding-intron (ENSMUSG00000055319.8, intron 6 of 18) 12511 ENSMUSG00000055319.8 ENSMUSG00000055319 ENSMUST00000206986 Sec23ip protein_coding Interval_37240 chr12 62547742 62550547 + 0 NA Intergenic Intergenic 13798 ENSMUSG00000113890.1 ENSMUSG00000113890 ENSMUST00000222266 Gm48368 processed_pseudogene Interval_69209 chr16 91357673 91358796 + 0 NA Intergenic Intergenic -8450 ENSMUSG00000065811.1 ENSMUSG00000065811 ENSMUST00000083877 Gm24695 snRNA Interval_101403 chr2 181080990 181081566 + 0 NA exon (ENSMUSG00000016346.17, exon 16 of 16) protein_coding-exon (ENSMUSG00000016346.17, exon 16 of 16) 28478 ENSMUSG00000016346.17 ENSMUSG00000016346 ENSMUST00000140789 Kcnq2 protein_coding Interval_167436 chr9 69313931 69314138 + 0 NA intron (ENSMUSG00000032238.17, intron 1 of 9) protein_coding-intron (ENSMUSG00000032238.17, intron 2 of 10) 50213 ENSMUSG00000086648.1 ENSMUSG00000086648 ENSMUST00000152570 Gm15511 antisense Interval_66905 chr16 38443429 38446429 + 0 NA exon (ENSMUSG00000002844.9, exon 4 of 4) protein_coding-exon (ENSMUSG00000002844.9, exon 4 of 4) -7461 ENSMUSG00000097576.2 ENSMUSG00000097576 ENSMUST00000231660 D930030I03Rik antisense Interval_52746 chr14 49300949 49301913 + 0 NA intron (ENSMUSG00000021852.14, intron 7 of 8) protein_coding-intron (ENSMUSG00000021852.14, intron 6 of 7) 1595 ENSMUSG00000115096.1 ENSMUSG00000115096 ENSMUST00000228016 Gm48940 antisense Interval_63833 chr16 3852444 3853126 + 0 NA intron (ENSMUSG00000054939.6, intron 2 of 2) protein_coding-intron (ENSMUSG00000054939.6, intron 2 of 2) 5517 ENSMUSG00000054939.6 ENSMUSG00000054939 ENSMUST00000041778 Zfp174 protein_coding Interval_125406 chr5 66722773 66723700 + 0 NA Intergenic Intergenic 4866 ENSMUSG00000107284.1 ENSMUSG00000107284 ENSMUST00000202958 Gm43280 TEC Interval_8382 chr1 138571607 138572236 + 0 NA promoter-TSS (ENSMUSG00000102448.1) TEC-promoter-TSS (ENSMUSG00000102448.1) -565 ENSMUSG00000102448.1 ENSMUSG00000102448 ENSMUST00000191656 Gm37101 TEC Interval_38819 chr12 82700869 82701572 + 0 NA intron (ENSMUSG00000021219.16, intron 2 of 16) protein_coding-intron (ENSMUSG00000021219.16, intron 1 of 14) 71236 ENSMUSG00000077630.1 ENSMUSG00000077630 ENSMUST00000104442 Gm22149 snoRNA Interval_54600 chr14 70988891 70989326 + 0 NA Intergenic Intergenic -98162 ENSMUSG00000115671.1 ENSMUSG00000115671 ENSMUST00000227525 Gm49289 lincRNA Interval_157667 chr8 72177187 72177871 + 0 NA intron (ENSMUSG00000003037.16, intron 6 of 7) protein_coding-intron (ENSMUSG00000003037.16, intron 6 of 7) -15914 ENSMUSG00000062007.13 ENSMUSG00000062007 ENSMUST00000165324 Hsh2d protein_coding Interval_91444 chr2 38915126 38915556 + 0 NA intron (ENSMUSG00000063972.13, intron 1 of 5) protein_coding-intron (ENSMUSG00000063972.13, intron 1 of 10) -16637 ENSMUSG00000046618.7 ENSMUSG00000046618 ENSMUST00000057279 Olfml2a protein_coding Interval_42679 chr13 17901304 17901602 + 0 NA intron (ENSMUSG00000008859.8, intron 1 of 4) protein_coding-intron (ENSMUSG00000008859.8, intron 1 of 4) 6598 ENSMUSG00000114177.1 ENSMUSG00000114177 ENSMUST00000221786 Gm18362 processed_pseudogene Interval_168167 chr9 77699503 77700142 + 0 NA intron (ENSMUSG00000111225.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000111225.1, intron 1 of 1) 8060 ENSMUSG00000110838.1 ENSMUSG00000110838 ENSMUST00000214443 Gm47789 lincRNA Interval_14936 chr10 41272009 41272330 + 0 NA intron (ENSMUSG00000038417.4, intron 5 of 22) protein_coding-intron (ENSMUSG00000038417.4, intron 5 of 22) 31091 ENSMUSG00000038417.4 ENSMUSG00000038417 ENSMUST00000043814 Fig4 protein_coding Interval_1171 chr1 16577748 16578607 + 0 NA intron (ENSMUSG00000025939.19, intron 5 of 5) protein_coding-intron (ENSMUSG00000025939.19, intron 5 of 5) -40383 ENSMUSG00000102457.1 ENSMUSG00000102457 ENSMUST00000195710 Gm38342 TEC Interval_42539 chr13 14921405 14921655 + 0 NA Intergenic Intergenic -21614 ENSMUSG00000114176.1 ENSMUSG00000114176 ENSMUST00000221755 Gm48329 processed_pseudogene Interval_132225 chr5 143425926 143426169 + 0 NA Intergenic Intergenic -12346 ENSMUSG00000105206.1 ENSMUSG00000105206 ENSMUST00000198525 Gm4870 processed_pseudogene Interval_38763 chr12 82106018 82106519 + 0 NA Intergenic Intergenic -44200 ENSMUSG00000064714.1 ENSMUSG00000064714 ENSMUST00000082780 n-R5s62 rRNA Interval_98333 chr2 151564916 151565131 + 0 NA Intergenic Intergenic -7599 ENSMUSG00000027456.8 ENSMUSG00000027456 ENSMUST00000028950 Sdcbp2 protein_coding Interval_116929 chr4 118276090 118276966 + 0 NA intron (ENSMUSG00000033295.14, intron 3 of 9) protein_coding-intron (ENSMUSG00000033295.14, intron 3 of 32) 14746 ENSMUSG00000033295.14 ENSMUSG00000033295 ENSMUST00000222620 Ptprf protein_coding Interval_130910 chr5 133925118 133925899 + 0 NA Intergenic Intergenic -5506 ENSMUSG00000104893.1 ENSMUSG00000104893 ENSMUST00000196197 Gm2404 processed_pseudogene Interval_143352 chr7 6070431 6071105 + 0 NA intron (ENSMUSG00000034690.13, intron 2 of 8) protein_coding-intron (ENSMUSG00000034690.13, intron 3 of 9) 10261 ENSMUSG00000034690.13 ENSMUSG00000034690 ENSMUST00000207267 Nlrp4c protein_coding Interval_79119 chr18 24696612 24696906 + 0 NA intron (ENSMUSG00000039616.10, intron 13 of 14) protein_coding-intron (ENSMUSG00000039616.10, intron 13 of 14) -10477 ENSMUSG00000084472.1 ENSMUSG00000084472 ENSMUST00000122523 n-R5s23 rRNA Interval_85980 chr19 34550096 34551290 + 0 NA promoter-TSS (ENSMUSG00000045932.12) protein_coding-promoter-TSS (ENSMUSG00000045932.12) -1 ENSMUSG00000045932.12 ENSMUSG00000045932 ENSMUST00000102826 Ifit2 protein_coding Interval_17675 chr10 79042090 79043178 + 0 NA Intergenic Intergenic 13893 ENSMUSG00000060205.3 ENSMUSG00000060205 ENSMUST00000082244 Olfr57 protein_coding Interval_27782 chr11 69979971 69981596 + 0 NA promoter-TSS (ENSMUSG00000018559.16) protein_coding-promoter-TSS (ENSMUSG00000018559.16) 91 ENSMUSG00000105100.1 ENSMUSG00000105100 ENSMUST00000197048 Gm44349 miRNA Interval_166277 chr9 57971730 57972535 + 0 NA Intergenic Intergenic -25909 ENSMUSG00000097604.1 ENSMUSG00000097604 ENSMUST00000181289 Gm17322 lincRNA Interval_39852 chr12 99068221 99068623 + 0 NA Intergenic Intergenic -4964 ENSMUSG00000114089.1 ENSMUSG00000114089 ENSMUST00000220675 Gm47116 lincRNA Interval_84659 chr19 14798237 14799103 + 0 NA Intergenic Intergenic -80190 ENSMUSG00000084675.1 ENSMUSG00000084675 ENSMUST00000122726 Gm26026 snRNA Interval_172534 chrX 35887954 35889750 + 0 NA promoter-TSS (ENSMUSG00000031093.14) protein_coding-promoter-TSS (ENSMUSG00000031093.14) 50725 ENSMUSG00000087847.1 ENSMUSG00000087847 ENSMUST00000157222 Gm25624 scaRNA Interval_158753 chr8 85893160 85893630 + 0 NA intron (ENSMUSG00000036879.15, intron 4 of 4) protein_coding-intron (ENSMUSG00000036879.15, intron 5 of 31) -38958 ENSMUSG00000090043.1 ENSMUSG00000090043 ENSMUST00000160428 Gm16167 processed_pseudogene Interval_85524 chr19 28010410 28012329 + 0 NA promoter-TSS (ENSMUSG00000040929.17) protein_coding-promoter-TSS (ENSMUSG00000040929.17) -229 ENSMUSG00000040929.17 ENSMUSG00000040929 ENSMUST00000174420 Rfx3 protein_coding Interval_16095 chr10 60714319 60714693 + 0 NA TTS (ENSMUSG00000020100.15) protein_coding-TTS (ENSMUSG00000020100.15) 38277 ENSMUSG00000020100.15 ENSMUSG00000020100 ENSMUST00000144989 Slc29a3 protein_coding Interval_33635 chr11 117653871 117656059 + 0 NA exon (ENSMUSG00000025571.13, exon 1 of 22) protein_coding-exon (ENSMUSG00000025571.13, exon 1 of 22) 43718 ENSMUSG00000054418.6 ENSMUSG00000054418 ENSMUST00000155384 2900041M22Rik processed_transcript Interval_13478 chr10 18525913 18527117 + 0 NA TTS (ENSMUSG00000039835.16) protein_coding-TTS (ENSMUSG00000039835.16) 19549 ENSMUSG00000019853.6 ENSMUSG00000019853 ENSMUST00000214548 Hebp2 protein_coding Interval_160582 chr8 110837873 110838118 + 0 NA TTS (ENSMUSG00000080396.1) snoRNA-TTS (ENSMUSG00000080396.1) 621 ENSMUSG00000080396.1 ENSMUSG00000080396 ENSMUST00000116746 Snord111 snoRNA Interval_52929 chr14 52092941 52093511 + 0 NA intron (ENSMUSG00000060373.15, intron 1 of 7) protein_coding-intron (ENSMUSG00000060373.15, intron 2 of 8) 10767 ENSMUSG00000060373.15 ENSMUSG00000060373 ENSMUST00000228786 Hnrnpc protein_coding Interval_46312 chr13 63719278 63720863 + 0 NA intron (ENSMUSG00000113825.1, intron 4 of 4) lincRNA-intron (ENSMUSG00000113825.1, intron 4 of 4) -10079 ENSMUSG00000114071.1 ENSMUSG00000114071 ENSMUST00000222256 Gm47390 lincRNA Interval_20433 chr10 117598825 117599113 + 0 NA Intergenic Intergenic 4243 ENSMUSG00000043800.11 ENSMUSG00000043800 ENSMUST00000179611 Kifc5c-ps transcribed_processed_pseudogene Interval_34850 chr12 12693658 12695127 + 0 NA Intergenic Intergenic -5647 ENSMUSG00000075893.1 ENSMUSG00000075893 ENSMUST00000101943 Gm25538 snRNA Interval_12402 chr1 193101574 193101916 + 0 NA intron (ENSMUSG00000016181.9, intron 2 of 3) protein_coding-intron (ENSMUSG00000016181.9, intron 4 of 4) 28462 ENSMUSG00000016181.9 ENSMUSG00000016181 ENSMUST00000194124 Utp25 protein_coding Interval_63031 chr15 98738797 98739254 + 0 NA exon (ENSMUSG00000051853.10, exon 5 of 5) protein_coding-exon (ENSMUSG00000051853.10, exon 5 of 5) -10873 ENSMUSG00000003355.7 ENSMUSG00000003355 ENSMUST00000229562 Fkbp11 protein_coding Interval_46194 chr13 62406439 62406651 + 0 NA intron (ENSMUSG00000113623.1, intron 1 of 1) transcribed_processed_pseudogene-intron (ENSMUSG00000113623.1, intron 3 of 3) 1333 ENSMUSG00000113623.1 ENSMUSG00000113623 ENSMUST00000221446 Gm48691 transcribed_processed_pseudogene Interval_75771 chr17 71224608 71225475 + 0 NA exon (ENSMUSG00000024052.17, exon 4 of 20) protein_coding-exon (ENSMUSG00000024052.17, exon 4 of 20) 41485 ENSMUSG00000024052.17 ENSMUSG00000024052 ENSMUST00000125665 Lpin2 protein_coding Interval_121758 chr5 7026822 7027180 + 0 NA intron (ENSMUSG00000092094.5, intron 1 of 3) protein_coding-intron (ENSMUSG00000092094.5, intron 1 of 3) 150855 ENSMUSG00000064851.1 ENSMUSG00000064851 ENSMUST00000082917 Gm24525 snRNA Interval_57800 chr15 20449010 20449421 + 0 NA promoter-TSS (ENSMUSG00000040452.9) protein_coding-promoter-TSS (ENSMUSG00000040452.9) 25 ENSMUSG00000115122.1 ENSMUSG00000115122 ENSMUST00000228652 Gm49685 antisense Interval_127403 chr5 103744665 103744848 + 0 NA intron (ENSMUSG00000029313.18, intron 2 of 6) protein_coding-intron (ENSMUSG00000029313.18, intron 2 of 6) -9808 ENSMUSG00000029313.18 ENSMUSG00000029313 ENSMUST00000152145 Aff1 protein_coding Interval_58727 chr15 37386246 37387065 + 0 NA intron (ENSMUSG00000051359.15, intron 2 of 2) protein_coding-intron (ENSMUSG00000051359.15, intron 5 of 6) -15208 ENSMUSG00000080408.1 ENSMUSG00000080408 ENSMUST00000116758 Gm23654 miRNA Interval_152681 chr7 136199768 136199976 + 0 NA Intergenic Intergenic -26576 ENSMUSG00000110396.1 ENSMUSG00000110396 ENSMUST00000209653 Gm36737 lincRNA Interval_108079 chr3 121403252 121403913 + 0 NA Intergenic Intergenic -22903 ENSMUSG00000106455.1 ENSMUSG00000106455 ENSMUST00000197896 Gm5711 processed_pseudogene Interval_63982 chr16 4991861 4992440 + 0 NA exon (ENSMUSG00000022542.7, exon 5 of 7) protein_coding-exon (ENSMUSG00000022542.7, exon 5 of 7) 5613 ENSMUSG00000022542.7 ENSMUSG00000022542 ENSMUST00000230878 Septin12 protein_coding Interval_111939 chr4 32691227 32691591 + 0 NA intron (ENSMUSG00000058006.12, intron 21 of 101) protein_coding-intron (ENSMUSG00000058006.12, intron 21 of 101) 34290 ENSMUSG00000058006.12 ENSMUSG00000058006 ENSMUST00000124361 Mdn1 protein_coding Interval_103843 chr3 53578460 53579717 + 0 NA intron (ENSMUSG00000037016.11, intron 4 of 23) protein_coding-intron (ENSMUSG00000037016.11, intron 4 of 23) -56068 ENSMUSG00000037016.11 ENSMUSG00000037016 ENSMUST00000199323 Frem2 protein_coding Interval_97481 chr2 137114248 137115184 + 0 NA intron (ENSMUSG00000027276.7, intron 2 of 25) protein_coding-intron (ENSMUSG00000027276.7, intron 2 of 25) -28767 ENSMUSG00000027276.7 ENSMUSG00000027276 ENSMUST00000133640 Jag1 protein_coding Interval_26919 chr11 61569454 61569782 + 0 NA intron (ENSMUSG00000001036.17, intron 1 of 10) protein_coding-intron (ENSMUSG00000001036.17, intron 1 of 9) 10069 ENSMUSG00000001036.17 ENSMUSG00000001036 ENSMUST00000137525 Epn2 protein_coding Interval_73431 chr17 37203319 37204117 + 0 NA Intergenic Intergenic -2724 ENSMUSG00000043827.9 ENSMUSG00000043827 ENSMUST00000055324 Olfr94 protein_coding Interval_4250 chr1 72172615 72173929 + 0 NA intron (ENSMUSG00000039395.8, intron 2 of 4) protein_coding-intron (ENSMUSG00000039395.8, intron 2 of 4) 39035 ENSMUSG00000039395.8 ENSMUSG00000039395 ENSMUST00000048860 Mreg protein_coding Interval_1203 chr1 17009874 17010172 + 0 NA intron (ENSMUSG00000042686.5, intron 3 of 4) protein_coding-intron (ENSMUSG00000042686.5, intron 3 of 4) -5804 ENSMUSG00000042686.5 ENSMUSG00000042686 ENSMUST00000038382 Jph1 protein_coding Interval_154987 chr8 25513166 25515362 + 0 NA intron (ENSMUSG00000031565.18, intron 2 of 3) protein_coding-intron (ENSMUSG00000031565.18, intron 2 of 3) -26679 ENSMUSG00000110063.1 ENSMUSG00000110063 ENSMUST00000211266 Gm31045 lincRNA Interval_36366 chr12 42141436 42141801 + 0 NA intron (ENSMUSG00000112898.1, intron 2 of 2) lincRNA-intron (ENSMUSG00000112898.1, intron 2 of 2) 10222 ENSMUSG00000112898.1 ENSMUSG00000112898 ENSMUST00000219118 Gm47020 lincRNA Interval_45970 chr13 59706230 59706744 + 0 NA promoter-TSS (ENSMUSG00000050876.9) protein_coding-promoter-TSS (ENSMUSG00000050876.9) -306 ENSMUSG00000050876.9 ENSMUSG00000050876 ENSMUST00000225362 Spata31d1a protein_coding Interval_87169 chr19 46572541 46573864 + 0 NA promoter-TSS (ENSMUSG00000025035.9) protein_coding-promoter-TSS (ENSMUSG00000025035.9) -9701 ENSMUSG00000025036.7 ENSMUSG00000025036 ENSMUST00000237001 Sfxn2 protein_coding Interval_126701 chr5 92133122 92133346 + 0 NA Intergenic Intergenic 7695 ENSMUSG00000084111.4 ENSMUSG00000084111 ENSMUST00000121821 Gm15710 processed_pseudogene Interval_18673 chr10 89116491 89116866 + 0 NA intron (ENSMUSG00000035189.17, intron 4 of 7) protein_coding-intron (ENSMUSG00000035189.17, intron 4 of 7) 140912 ENSMUSG00000035189.17 ENSMUSG00000035189 ENSMUST00000180843 Ano4 protein_coding Interval_86338 chr19 38868777 38871401 + 0 NA intron (ENSMUSG00000048720.8, intron 2 of 10) protein_coding-intron (ENSMUSG00000048720.8, intron 2 of 12) -15153 ENSMUSG00000089545.1 ENSMUSG00000089545 ENSMUST00000158920 Gm25838 misc_RNA Interval_58493 chr15 35188951 35189939 + 0 NA Intergenic Intergenic -11359 ENSMUSG00000115345.1 ENSMUSG00000115345 ENSMUST00000228112 Gm33497 lincRNA Interval_171522 chr9 119010022 119010528 + 0 NA intron (ENSMUSG00000047409.13, intron 1 of 5) protein_coding-intron (ENSMUSG00000047409.13, intron 1 of 7) -21521 ENSMUSG00000065513.1 ENSMUSG00000065513 ENSMUST00000083579 Mir26a-1 miRNA Interval_166231 chr9 57644912 57645928 + 0 NA promoter-TSS (ENSMUSG00000032312.7) protein_coding-promoter-TSS (ENSMUSG00000032312.7) -11353 ENSMUSG00000032312.7 ENSMUSG00000032312 ENSMUST00000213943 Csk protein_coding Interval_100428 chr2 168959189 168959898 + 0 NA Intergenic Intergenic -4277 ENSMUSG00000027551.15 ENSMUSG00000027551 ENSMUST00000136242 Zfp64 protein_coding Interval_142995 chr6 148178431 148178942 + 0 NA TTS (ENSMUSG00000030304.11) protein_coding-TTS (ENSMUSG00000030304.11) 4522 ENSMUSG00000030304.11 ENSMUSG00000030304 ENSMUST00000132413 Ergic2 protein_coding Interval_126453 chr5 88664549 88664768 + 0 NA intron (ENSMUSG00000044221.14, intron 3 of 5) protein_coding-intron (ENSMUSG00000044221.14, intron 6 of 9) 11012 ENSMUSG00000044221.14 ENSMUSG00000044221 ENSMUST00000137725 Grsf1 protein_coding Interval_165455 chr9 48266705 48267861 + 0 NA intron (ENSMUSG00000044229.9, intron 2 of 8) protein_coding-intron (ENSMUSG00000044229.9, intron 1 of 10) 73571 ENSMUSG00000032028.15 ENSMUSG00000032028 ENSMUST00000142667 Nxpe2 protein_coding Interval_79621 chr18 34050324 34050626 + 0 NA intron (ENSMUSG00000117961.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000117961.1, intron 1 of 1) 2559 ENSMUSG00000117961.1 ENSMUSG00000117961 ENSMUST00000235466 Gm50265 lincRNA Interval_8346 chr1 137597378 137597851 + 0 NA Intergenic Intergenic -66384 ENSMUSG00000103070.1 ENSMUSG00000103070 ENSMUST00000192122 Gm37903 TEC Interval_61254 chr15 80277331 80277871 + 0 NA Intergenic Intergenic -13355 ENSMUSG00000051518.8 ENSMUSG00000051518 ENSMUST00000229962 Rps19bp1 protein_coding Interval_158821 chr8 86870509 86871051 + 0 NA intron (ENSMUSG00000031652.11, intron 1 of 6) protein_coding-intron (ENSMUSG00000031652.11, intron 1 of 6) -14908 ENSMUSG00000098434.1 ENSMUSG00000098434 ENSMUST00000184161 2010110E17Rik lincRNA Interval_81196 chr18 56357512 56357925 + 0 NA Intergenic Intergenic -32425 ENSMUSG00000117688.1 ENSMUSG00000117688 ENSMUST00000235993 Gm8629 processed_pseudogene Interval_69999 chr17 4196614 4197833 + 0 NA Intergenic Intergenic -75121 ENSMUSG00000116615.1 ENSMUSG00000116615 ENSMUST00000231319 4930548J01Rik processed_transcript Interval_27330 chr11 66525236 66527559 + 0 NA promoter-TSS (ENSMUSG00000053930.13) protein_coding-promoter-TSS (ENSMUSG00000053930.13) -23583 ENSMUSG00000053930.13 ENSMUSG00000053930 ENSMUST00000134562 Shisa6 protein_coding Interval_170494 chr9 108308334 108308616 + 0 NA exon (ENSMUSG00000007815.13, exon 1 of 1) protein_coding-exon (ENSMUSG00000007815.13, exon 1 of 1) 1678 ENSMUSG00000007815.13 ENSMUSG00000007815 ENSMUST00000193424 Rhoa protein_coding Interval_85804 chr19 31920867 31922276 + 0 NA intron (ENSMUSG00000052595.8, intron 6 of 7) protein_coding-intron (ENSMUSG00000052595.8, intron 6 of 11) 7927 ENSMUSG00000114443.1 ENSMUSG00000114443 ENSMUST00000224809 Gm19241 processed_pseudogene Interval_51528 chr14 29877621 29878258 + 0 NA Intergenic Intergenic -25011 ENSMUSG00000114606.1 ENSMUSG00000114606 ENSMUST00000223966 Gm7633 transcribed_processed_pseudogene Interval_95497 chr2 110237056 110237726 + 0 NA intron (ENSMUSG00000085444.1, intron 1 of 1) antisense-intron (ENSMUSG00000085444.1, intron 1 of 1) 19388 ENSMUSG00000064779.1 ENSMUSG00000064779 ENSMUST00000082845 Gm22997 snRNA Interval_147739 chr7 73275679 73277025 + 0 NA Intergenic Intergenic -34178 ENSMUSG00000108530.1 ENSMUSG00000108530 ENSMUST00000205600 4930429H19Rik lincRNA Interval_91736 chr2 48922312 48923416 + 0 NA intron (ENSMUSG00000026761.12, intron 8 of 13) protein_coding-intron (ENSMUSG00000026761.12, intron 8 of 13) -12851 ENSMUSG00000026761.12 ENSMUSG00000026761 ENSMUST00000123271 Orc4 protein_coding Interval_10332 chr1 169485423 169485887 + 0 NA Intergenic Intergenic -31786 ENSMUSG00000058622.1 ENSMUSG00000058622 ENSMUST00000076828 Gm5265 processed_pseudogene Interval_4281 chr1 72364835 72365350 + 0 NA intron (ENSMUSG00000026187.9, intron 16 of 20) protein_coding-intron (ENSMUSG00000026187.9, intron 16 of 20) 57665 ENSMUSG00000026187.9 ENSMUSG00000026187 ENSMUST00000027379 Xrcc5 protein_coding Interval_99551 chr2 163095107 163095589 + 0 NA Intergenic Intergenic 2449 ENSMUSG00000096635.1 ENSMUSG00000096635 ENSMUST00000175050 Gm22174 miRNA Interval_114658 chr4 83524809 83526006 + 0 NA promoter-TSS (ENSMUSG00000052407.17) protein_coding-promoter-TSS (ENSMUSG00000052407.17) -138 ENSMUSG00000052407.17 ENSMUSG00000052407 ENSMUST00000183729 Ccdc171 protein_coding Interval_128446 chr5 113358751 113359601 + 0 NA Intergenic Intergenic 1882 ENSMUSG00000053873.1 ENSMUSG00000053873 ENSMUST00000066573 Aym1 protein_coding Interval_94135 chr2 84617792 84618000 + 0 NA intron (ENSMUSG00000034101.14, intron 1 of 13) protein_coding-intron (ENSMUSG00000034101.14, intron 6 of 18) -8199 ENSMUSG00000034101.14 ENSMUSG00000034101 ENSMUST00000149317 Ctnnd1 protein_coding Interval_111755 chr4 27505442 27505656 + 0 NA Intergenic Intergenic -37629 ENSMUSG00000084163.1 ENSMUSG00000084163 ENSMUST00000120412 Gm11901 processed_pseudogene Interval_135518 chr6 39870477 39873566 + 0 NA promoter-TSS (ENSMUSG00000097406.1) antisense-promoter-TSS (ENSMUSG00000097406.1) -50 ENSMUSG00000097406.1 ENSMUSG00000097406 ENSMUST00000180899 Gm26833 antisense Interval_36532 chr12 48670874 48671350 + 0 NA Intergenic Intergenic 38819 ENSMUSG00000112005.1 ENSMUSG00000112005 ENSMUST00000218070 Gm29818 processed_pseudogene Interval_124351 chr5 44307706 44308025 + 0 NA Intergenic Intergenic -47840 ENSMUSG00000104541.1 ENSMUSG00000104541 ENSMUST00000198298 Gm43114 TEC Interval_59949 chr15 62156511 62157392 + 0 NA intron (ENSMUSG00000097039.8, intron 3 of 9) lincRNA-intron (ENSMUSG00000097039.8, intron 3 of 8) -18471 ENSMUSG00000098595.1 ENSMUSG00000098595 ENSMUST00000184054 Gm27957 misc_RNA Interval_57229 chr15 7998703 7999572 + 0 NA intron (ENSMUSG00000039828.7, intron 9 of 17) protein_coding-intron (ENSMUSG00000039828.7, intron 9 of 17) 23809 ENSMUSG00000098281.1 ENSMUSG00000098281 ENSMUST00000184975 Gm27529 miRNA Interval_170461 chr9 108136231 108137744 + 0 NA promoter-TSS (ENSMUSG00000102224.5) processed_transcript-promoter-TSS (ENSMUSG00000102224.5) -341 ENSMUSG00000102224.5 ENSMUSG00000102224 ENSMUST00000195536 4930447F24Rik processed_transcript Interval_85536 chr19 28182198 28183266 + 0 NA Intergenic Intergenic -36429 ENSMUSG00000117862.1 ENSMUSG00000117862 ENSMUST00000236360 Gm35781 processed_pseudogene Interval_95638 chr2 113296688 113297016 + 0 NA exon (ENSMUSG00000041255.2, exon 12 of 12) protein_coding-exon (ENSMUSG00000041255.2, exon 12 of 12) 8579 ENSMUSG00000093660.1 ENSMUSG00000093660 ENSMUST00000176208 Gm26505 snRNA Interval_57100 chr15 6375382 6377005 + 0 NA intron (ENSMUSG00000022150.16, intron 2 of 2) protein_coding-intron (ENSMUSG00000022150.16, intron 1 of 13) -46047 ENSMUSG00000022150.16 ENSMUSG00000022150 ENSMUST00000161558 Dab2 protein_coding Interval_58681 chr15 37016072 37016557 + 0 NA intron (ENSMUSG00000097259.2, intron 1 of 1) antisense-intron (ENSMUSG00000097259.2, intron 1 of 6) 8731 ENSMUSG00000097259.2 ENSMUSG00000097259 ENSMUST00000227544 Gm26766 antisense Interval_74668 chr17 55802783 55803567 + 0 NA intron (ENSMUSG00000032915.6, intron 11 of 16) protein_coding-intron (ENSMUSG00000032915.6, intron 11 of 16) -34704 ENSMUSG00000117045.1 ENSMUSG00000117045 ENSMUST00000233119 Gm18365 processed_pseudogene Interval_152295 chr7 131486954 131487518 + 0 NA intron (ENSMUSG00000030849.18, intron 2 of 6) protein_coding-intron (ENSMUSG00000030849.18, intron 2 of 6) 6667 ENSMUSG00000109087.1 ENSMUSG00000109087 ENSMUST00000207824 Gm45105 processed_pseudogene Interval_57486 chr15 11710475 11712104 + 0 NA Intergenic Intergenic -7586 ENSMUSG00000115585.1 ENSMUSG00000115585 ENSMUST00000228108 Gm41271 processed_transcript Interval_24345 chr11 32587445 32589034 + 0 NA promoter-TSS (ENSMUSG00000020272.8) protein_coding-promoter-TSS (ENSMUSG00000020272.8) -356 ENSMUSG00000020272.8 ENSMUSG00000020272 ENSMUST00000143397 Stk10 protein_coding Interval_134682 chr6 30346017 30347089 + 0 NA TTS (ENSMUSG00000087846.1) rRNA-TTS (ENSMUSG00000087846.1) 913 ENSMUSG00000087846.1 ENSMUSG00000087846 ENSMUST00000157221 Gm25625 rRNA Interval_90884 chr2 33203389 33204390 + 0 NA intron (ENSMUSG00000038831.16, intron 8 of 17) protein_coding-intron (ENSMUSG00000038831.16, intron 7 of 16) 8052 ENSMUSG00000088836.1 ENSMUSG00000088836 ENSMUST00000158211 Gm23546 snoRNA Interval_165163 chr9 44920111 44921706 + 0 NA promoter-TSS (ENSMUSG00000038717.8) protein_coding-promoter-TSS (ENSMUSG00000038717.8) 709 ENSMUSG00000111082.1 ENSMUSG00000111082 ENSMUST00000215803 Gm30934 antisense Interval_17059 chr10 70939375 70939643 + 0 NA intron (ENSMUSG00000014329.14, intron 7 of 7) protein_coding-intron (ENSMUSG00000014329.14, intron 17 of 21) 8980 ENSMUSG00000014329.14 ENSMUSG00000014329 ENSMUST00000144740 Bicc1 protein_coding Interval_32893 chr11 112853804 112854642 + 0 NA Intergenic Intergenic 29044 ENSMUSG00000020624.3 ENSMUSG00000020624 ENSMUST00000153429 4933434M16Rik lincRNA Interval_61540 chr15 82241111 82241661 + 0 NA exon (ENSMUSG00000068101.11, exon 3 of 5) protein_coding-exon (ENSMUSG00000068101.11, exon 3 of 5) 3024 ENSMUSG00000068101.11 ENSMUSG00000068101 ENSMUST00000229747 Cenpm protein_coding Interval_168946 chr9 89466473 89467562 + 0 NA Intergenic Intergenic 93367 ENSMUSG00000111806.1 ENSMUSG00000111806 ENSMUST00000217127 Gm47403 lincRNA Interval_23761 chr11 25996262 25997235 + 0 NA intron (ENSMUSG00000032985.15, intron 1 of 5) protein_coding-intron (ENSMUSG00000032985.15, intron 1 of 6) -205492 ENSMUSG00000099015.1 ENSMUSG00000099015 ENSMUST00000185114 Mir6372 miRNA Interval_102809 chr3 31217437 31218314 + 0 NA intron (ENSMUSG00000069072.9, intron 7 of 7) protein_coding-intron (ENSMUSG00000069072.9, intron 7 of 7) 40519 ENSMUSG00000069072.9 ENSMUSG00000069072 ENSMUST00000108245 Slc7a14 protein_coding Interval_146104 chr7 43928640 43928937 + 0 NA Intergenic Intergenic -5005 ENSMUSG00000055193.4 ENSMUSG00000055193 ENSMUST00000206955 Klk15 protein_coding Interval_47498 chr13 85618797 85619042 + 0 NA Intergenic Intergenic -45341 ENSMUSG00000114506.1 ENSMUSG00000114506 ENSMUST00000224841 Gm5666 processed_pseudogene Interval_140670 chr6 120442610 120442868 + 0 NA exon (ENSMUSG00000030180.15, exon 28 of 28) protein_coding-exon (ENSMUSG00000030180.15, exon 28 of 28) -20508 ENSMUSG00000002897.5 ENSMUSG00000002897 ENSMUST00000204078 Il17ra protein_coding Interval_135529 chr6 40015235 40016612 + 0 NA intron (ENSMUSG00000057716.7, intron 2 of 3) protein_coding-intron (ENSMUSG00000057716.7, intron 2 of 3) -10971 ENSMUSG00000103331.1 ENSMUSG00000103331 ENSMUST00000194958 Gm37995 TEC Interval_128993 chr5 116501539 116501752 + 0 NA exon (ENSMUSG00000107172.1, exon 1 of 1) TEC-exon (ENSMUSG00000107172.1, exon 1 of 1) 1071 ENSMUSG00000107172.1 ENSMUSG00000107172 ENSMUST00000200924 4933430H06Rik TEC Interval_174204 chrX 139582201 139582589 + 0 NA intron (ENSMUSG00000031438.11, intron 1 of 6) protein_coding-intron (ENSMUSG00000031438.11, intron 1 of 6) -28972 ENSMUSG00000031438.11 ENSMUSG00000031438 ENSMUST00000113029 Rnf128 protein_coding Interval_25158 chr11 44616569 44617518 + 0 NA promoter-TSS (ENSMUSG00000057098.14) protein_coding-promoter-TSS (ENSMUSG00000057098.14) -27 ENSMUSG00000102563.1 ENSMUSG00000102563 ENSMUST00000191765 Gm37695 TEC Interval_152414 chr7 132878971 132879179 + 0 NA promoter-TSS (ENSMUSG00000030965.19) protein_coding-promoter-TSS (ENSMUSG00000030965.19) 9612 ENSMUSG00000097595.2 ENSMUSG00000097595 ENSMUST00000180905 1500002F19Rik processed_transcript Interval_79281 chr18 29681516 29682080 + 0 NA Intergenic Intergenic -24202 ENSMUSG00000117626.1 ENSMUSG00000117626 ENSMUST00000234976 Gm7917 processed_pseudogene Interval_53591 chr14 59630049 59630340 + 0 NA TTS (ENSMUSG00000044461.6) protein_coding-TTS (ENSMUSG00000044461.6) 3005 ENSMUSG00000044461.6 ENSMUSG00000044461 ENSMUST00000224155 Shisa2 protein_coding Interval_40639 chr12 106210052 106210237 + 0 NA Intergenic Intergenic -10931 ENSMUSG00000077640.1 ENSMUSG00000077640 ENSMUST00000104452 Gm24986 snoRNA Interval_140596 chr6 119929996 119930213 + 0 NA TTS (ENSMUSG00000045962.16) protein_coding-intron (ENSMUSG00000045962.16, intron 3 of 4) 12022 ENSMUSG00000030166.14 ENSMUSG00000030166 ENSMUST00000204319 Rad52 protein_coding Interval_15419 chr10 45874582 45874773 + 0 NA promoter-TSS (ENSMUSG00000110841.1) transcribed_processed_pseudogene-promoter-TSS (ENSMUSG00000110841.1) -628 ENSMUSG00000110841.1 ENSMUSG00000110841 ENSMUST00000217344 Gpx4-ps2 transcribed_processed_pseudogene Interval_123018 chr5 28469610 28470160 + 0 NA intron (ENSMUSG00000097726.7, intron 1 of 6) antisense-intron (ENSMUSG00000097726.7, intron 1 of 6) -2629 ENSMUSG00000002633.4 ENSMUSG00000002633 ENSMUST00000002708 Shh protein_coding Interval_6452 chr1 109538845 109539053 + 0 NA Intergenic Intergenic 36180 ENSMUSG00000100884.1 ENSMUSG00000100884 ENSMUST00000185658 Gm28281 processed_pseudogene Interval_48432 chr13 98975727 98977888 + 0 NA Intergenic Intergenic 3429 ENSMUSG00000114873.1 ENSMUSG00000114873 ENSMUST00000224868 Gm47052 processed_pseudogene Interval_72218 chr17 28643495 28644347 + 0 NA intron (ENSMUSG00000036196.16, intron 15 of 17) protein_coding-intron (ENSMUSG00000036196.16, intron 17 of 19) -21438 ENSMUSG00000004865.16 ENSMUSG00000004865 ENSMUST00000114767 Srpk1 protein_coding Interval_50869 chr14 20340159 20340977 + 0 NA intron (ENSMUSG00000021810.3, intron 2 of 4) protein_coding-intron (ENSMUSG00000021810.3, intron 3 of 13) 7482 ENSMUSG00000021810.3 ENSMUSG00000021810 ENSMUST00000224412 Ecd protein_coding Interval_153388 chr7 144283798 144285054 + 0 NA promoter-TSS (ENSMUSG00000037541.22) protein_coding-promoter-TSS (ENSMUSG00000037541.22) 45701 ENSMUSG00000037541.22 ENSMUSG00000037541 ENSMUST00000136979 Shank2 protein_coding Interval_71004 chr17 17129448 17130392 + 0 NA intron (ENSMUSG00000095990.1, intron 1 of 3) protein_coding-intron (ENSMUSG00000095990.1, intron 1 of 3) 8505 ENSMUSG00000095990.1 ENSMUSG00000095990 ENSMUST00000147630 Zfp97 protein_coding Interval_164066 chr9 31259400 31259937 + 0 NA Intergenic Intergenic -15153 ENSMUSG00000091003.2 ENSMUSG00000091003 ENSMUST00000164658 Gm7244 processed_pseudogene Interval_152237 chr7 130837339 130838488 + 0 NA intron (ENSMUSG00000030849.18, intron 2 of 6) protein_coding-intron (ENSMUSG00000030849.18, intron 2 of 6) 28417 ENSMUSG00000086108.2 ENSMUSG00000086108 ENSMUST00000146366 Gm5602 antisense Interval_51990 chr14 34465086 34465375 + 0 NA intron (ENSMUSG00000021796.15, intron 1 of 4) protein_coding-intron (ENSMUSG00000021796.15, intron 1 of 12) -36485 ENSMUSG00000090779.1 ENSMUSG00000090779 ENSMUST00000171248 Gm17110 antisense Interval_21931 chr11 5269674 5270217 + 0 NA Intergenic Intergenic -4140 ENSMUSG00000118486.1 ENSMUSG00000118486 ENSMUST00000238466 Gm30172 unitary_pseudogene Interval_67227 chr16 44567873 44568591 + 0 NA Intergenic Intergenic -9335 ENSMUSG00000022687.12 ENSMUSG00000022687 ENSMUST00000114634 Boc protein_coding Interval_33131 chr11 114652503 114652918 + 0 NA Intergenic Intergenic -11898 ENSMUSG00000083769.1 ENSMUSG00000083769 ENSMUST00000120766 Gm11689 processed_pseudogene Interval_34880 chr12 12919702 12921060 + 0 NA Intergenic Intergenic 8359 ENSMUSG00000066629.2 ENSMUSG00000066629 ENSMUST00000085720 Rpl36-ps3 processed_pseudogene Interval_20774 chr10 120888283 120888874 + 0 NA intron (ENSMUSG00000051236.13, intron 1 of 6) protein_coding-intron (ENSMUSG00000051236.13, intron 1 of 6) -10579 ENSMUSG00000086522.1 ENSMUSG00000086522 ENSMUST00000145987 Gm4473 bidirectional_promoter_lncRNA Interval_148602 chr7 83038015 83038760 + 0 NA Intergenic Intergenic 43552 ENSMUSG00000077149.1 ENSMUSG00000077149 ENSMUST00000103961 Gm22934 snoRNA Interval_21341 chr10 128068412 128069672 + 0 NA promoter-TSS (ENSMUSG00000071072.12) protein_coding-promoter-TSS (ENSMUSG00000071072.12) -230 ENSMUSG00000071072.12 ENSMUSG00000071072 ENSMUST00000148943 Ptges3 protein_coding Interval_86520 chr19 41359393 41359639 + 0 NA intron (ENSMUSG00000025017.10, intron 2 of 8) protein_coding-intron (ENSMUSG00000025017.10, intron 2 of 16) 25586 ENSMUSG00000025017.10 ENSMUSG00000025017 ENSMUST00000235978 Pik3ap1 protein_coding Interval_103279 chr3 37772931 37773275 + 0 NA Intergenic Intergenic 12066 ENSMUSG00000106441.1 ENSMUSG00000106441 ENSMUST00000196670 Gm42921 lincRNA Interval_51205 chr14 24983045 24983512 + 0 NA Intergenic Intergenic -47819 ENSMUSG00000114416.1 ENSMUSG00000114416 ENSMUST00000224831 Gm47907 TEC Interval_41082 chr12 111071351 111072269 + 0 NA intron (ENSMUSG00000037896.17, intron 2 of 11) protein_coding-intron (ENSMUSG00000037896.17, intron 2 of 11) -3782 ENSMUSG00000114110.1 ENSMUSG00000114110 ENSMUST00000222551 Gm46379 processed_pseudogene Interval_156071 chr8 43406843 43407809 + 0 NA Intergenic Intergenic 29351 ENSMUSG00000084702.1 ENSMUSG00000084702 ENSMUST00000122753 Gm22986 snoRNA Interval_21649 chr11 3458487 3459425 + 0 NA TTS (ENSMUSG00000034587.8) processed_transcript-TTS (ENSMUSG00000034587.8) 6476 ENSMUSG00000034587.8 ENSMUSG00000034587 ENSMUST00000154397 8430429K09Rik processed_transcript Interval_164756 chr9 41190984 41191879 + 0 NA Intergenic Intergenic -4665 ENSMUSG00000100837.7 ENSMUSG00000100837 ENSMUST00000188499 1700063D05Rik lincRNA Interval_144512 chr7 25610879 25612495 + 0 NA Intergenic Intergenic 4205 ENSMUSG00000074261.3 ENSMUSG00000074261 ENSMUST00000238895 Erich4 protein_coding Interval_129231 chr5 118339382 118340209 + 0 NA Intergenic Intergenic 57535 ENSMUSG00000106812.1 ENSMUSG00000106812 ENSMUST00000201179 Gm28563 lincRNA Interval_7175 chr1 127482089 127483169 + 0 NA exon (ENSMUSG00000036155.13, exon 18 of 18) protein_coding-exon (ENSMUSG00000036155.13, exon 18 of 18) 75853 ENSMUSG00000103390.1 ENSMUSG00000103390 ENSMUST00000195573 Gm38301 TEC Interval_142229 chr6 139350681 139351324 + 0 NA Intergenic Intergenic -28426 ENSMUSG00000108128.1 ENSMUSG00000108128 ENSMUST00000204038 4922502N22Rik lincRNA Interval_104912 chr3 78961365 78961727 + 0 NA Intergenic Intergenic 5253 ENSMUSG00000037096.6 ENSMUSG00000037096 ENSMUST00000036976 Gm9762 processed_pseudogene Interval_90015 chr2 27342665 27343395 + 0 NA intron (ENSMUSG00000009621.18, intron 1 of 29) protein_coding-intron (ENSMUSG00000009621.18, intron 2 of 27) 16326 ENSMUSG00000086669.1 ENSMUSG00000086669 ENSMUST00000156020 AA645442 antisense Interval_2541 chr1 40056939 40058103 + 0 NA Intergenic Intergenic -7153 ENSMUSG00000102985.1 ENSMUSG00000102985 ENSMUST00000193054 4930456G14Rik TEC Interval_110309 chr3 156500325 156500541 + 0 NA Intergenic Intergenic 61254 ENSMUSG00000085084.7 ENSMUSG00000085084 ENSMUST00000140941 4930570G19Rik lincRNA Interval_38000 chr12 73719593 73720140 + 0 NA intron (ENSMUSG00000021108.18, intron 10 of 14) protein_coding-intron (ENSMUSG00000021108.18, intron 9 of 13) -73617 ENSMUSG00000113321.1 ENSMUSG00000113321 ENSMUST00000222997 Gm8075 lincRNA Interval_42554 chr13 15353277 15353657 + 0 NA Intergenic Intergenic -22157 ENSMUSG00000113410.1 ENSMUSG00000113410 ENSMUST00000222267 Gm20043 lincRNA Interval_83175 chr18 82553951 82555277 + 0 NA promoter-TSS (ENSMUSG00000041607.17) protein_coding-promoter-TSS (ENSMUSG00000041607.17) 68 ENSMUSG00000041607.17 ENSMUSG00000041607 ENSMUST00000150952 Mbp protein_coding Interval_77348 chr17 88116600 88117464 + 0 NA Intergenic Intergenic -8480 ENSMUSG00000058869.9 ENSMUSG00000058869 ENSMUST00000182679 Gm4832 transcribed_processed_pseudogene Interval_64080 chr16 7404167 7405515 + 0 NA intron (ENSMUSG00000008658.16, intron 11 of 12) protein_coding-intron (ENSMUSG00000008658.16, intron 13 of 14) 211094 ENSMUSG00000008658.16 ENSMUSG00000008658 ENSMUST00000231031 Rbfox1 protein_coding Interval_113104 chr4 48271669 48272262 + 0 NA intron (ENSMUSG00000028343.10, intron 1 of 2) protein_coding-intron (ENSMUSG00000028343.10, intron 1 of 11) 7487 ENSMUSG00000028343.10 ENSMUSG00000028343 ENSMUST00000148947 Erp44 protein_coding Interval_15508 chr10 50040109 50040303 + 0 NA Intergenic Intergenic -58325 ENSMUSG00000111142.1 ENSMUSG00000111142 ENSMUST00000214421 Gm48131 TEC Interval_55023 chr14 77065719 77065943 + 0 NA intron (ENSMUSG00000034795.14, intron 1 of 6) protein_coding-intron (ENSMUSG00000034795.14, intron 1 of 5) 28967 ENSMUSG00000034795.14 ENSMUSG00000034795 ENSMUST00000137110 Ccdc122 protein_coding Interval_168355 chr9 79446165 79446695 + 0 NA exon (ENSMUSG00000111765.1, exon 3 of 3) lincRNA-exon (ENSMUSG00000111765.1, exon 3 of 3) -50961 ENSMUSG00000111560.1 ENSMUSG00000111560 ENSMUST00000215133 Gm35262 processed_pseudogene Interval_77288 chr17 87818771 87819048 + 0 NA Intergenic Intergenic -6164 ENSMUSG00000117466.1 ENSMUSG00000117466 ENSMUST00000234350 Gm50039 lincRNA Interval_103544 chr3 48405031 48405231 + 0 NA Intergenic Intergenic 203971 ENSMUSG00000037910.2 ENSMUSG00000037910 ENSMUST00000036023 1700018B24Rik lincRNA Interval_109226 chr3 138065043 138065558 + 0 NA exon (ENSMUSG00000090066.2, exon 1 of 2) protein_coding-exon (ENSMUSG00000090066.2, exon 1 of 2) 2088 ENSMUSG00000049349.3 ENSMUSG00000049349 ENSMUST00000053318 Gm5105 protein_coding Interval_160463 chr8 109723648 109723896 + 0 NA intron (ENSMUSG00000031728.10, intron 7 of 7) protein_coding-intron (ENSMUSG00000031728.10, intron 8 of 8) 8341 ENSMUSG00000069895.4 ENSMUSG00000069895 ENSMUST00000212726 Atxn1l protein_coding Interval_158402 chr8 83497910 83498105 + 0 NA Intergenic Intergenic -7208 ENSMUSG00000110448.1 ENSMUSG00000110448 ENSMUST00000212130 Gm33242 processed_pseudogene Interval_129061 chr5 117143851 117144448 + 0 NA intron (ENSMUSG00000061288.13, intron 1 of 12) protein_coding-intron (ENSMUSG00000061288.13, intron 1 of 19) 10561 ENSMUSG00000061288.13 ENSMUSG00000061288 ENSMUST00000111975 Taok3 protein_coding Interval_140640 chr6 120264246 120264554 + 0 NA intron (ENSMUSG00000041372.10, intron 1 of 19) protein_coding-intron (ENSMUSG00000041372.10, intron 1 of 19) 30159 ENSMUSG00000041372.10 ENSMUSG00000041372 ENSMUST00000212457 B4galnt3 protein_coding Interval_139897 chr6 112503664 112504599 + 0 NA Intergenic Intergenic -9316 ENSMUSG00000099205.1 ENSMUSG00000099205 ENSMUST00000185155 Gm27944 snRNA Interval_34878 chr12 12909425 12910698 + 0 NA intron (ENSMUSG00000113465.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000113465.1, intron 1 of 1) 633 ENSMUSG00000113465.1 ENSMUSG00000113465 ENSMUST00000221752 Gm40271 lincRNA Interval_51232 chr14 25396920 25398167 + 0 NA intron (ENSMUSG00000087535.2, intron 2 of 3) antisense-intron (ENSMUSG00000087535.2, intron 2 of 3) -17934 ENSMUSG00000097601.2 ENSMUSG00000097601 ENSMUST00000181582 Gm26660 lincRNA Interval_161815 chr8 122969398 122969735 + 0 NA intron (ENSMUSG00000035569.17, intron 2 of 2) protein_coding-intron (ENSMUSG00000035569.17, intron 2 of 12) 13377 ENSMUSG00000065915.1 ENSMUSG00000065915 ENSMUST00000083981 Gm24445 snRNA Interval_83382 chr18 84739211 84739885 + 0 NA TTS (ENSMUSG00000047992.11) protein_coding-TTS (ENSMUSG00000047992.11) -2157 ENSMUSG00000089410.1 ENSMUSG00000089410 ENSMUST00000158785 Gm22014 misc_RNA Interval_108244 chr3 122923882 122924804 + 0 NA promoter-TSS (ENSMUSG00000097852.5) antisense-promoter-TSS (ENSMUSG00000097852.5) 140 ENSMUSG00000054091.9 ENSMUSG00000054091 ENSMUST00000106429 1810037I17Rik protein_coding Interval_150047 chr7 105389193 105389841 + 0 NA promoter-TSS (ENSMUSG00000044465.19) protein_coding-promoter-TSS (ENSMUSG00000044465.19) -5074 ENSMUSG00000044465.19 ENSMUSG00000044465 ENSMUST00000210341 Fam160a2 protein_coding Interval_34185 chr11 121156137 121157167 + 0 NA Intergenic Intergenic -3619 ENSMUSG00000039321.1 ENSMUSG00000039321 ENSMUST00000039044 Uts2r protein_coding Interval_6566 chr1 117098567 117098787 + 0 NA Intergenic Intergenic 294855 ENSMUSG00000101154.1 ENSMUSG00000101154 ENSMUST00000189740 Gm17777 processed_pseudogene Interval_2659 chr1 43059398 43059676 + 0 NA TTS (ENSMUSG00000070939.9) protein_coding-TTS (ENSMUSG00000070939.9) 3270 ENSMUSG00000100269.1 ENSMUSG00000100269 ENSMUST00000185980 Gm28782 antisense Interval_165368 chr9 46735361 46736411 + 0 NA Intergenic Intergenic -21728 ENSMUSG00000111783.1 ENSMUSG00000111783 ENSMUST00000216630 Gm8863 processed_pseudogene Interval_88882 chr2 12016928 12017535 + 0 NA Intergenic Intergenic 66761 ENSMUSG00000080801.2 ENSMUSG00000080801 ENSMUST00000120962 Gm13310 processed_pseudogene Interval_35679 chr12 27405961 27406896 + 0 NA Intergenic Intergenic -63854 ENSMUSG00000063632.6 ENSMUSG00000063632 ENSMUST00000079063 Sox11 protein_coding Interval_151767 chr7 126527705 126528548 + 0 NA Intergenic Intergenic -24771 ENSMUSG00000032637.15 ENSMUSG00000032637 ENSMUST00000179818 Atxn2l protein_coding Interval_28058 chr11 72555987 72556669 + 0 NA Intergenic Intergenic 17002 ENSMUSG00000081675.1 ENSMUSG00000081675 ENSMUST00000120676 Gm12712 processed_pseudogene Interval_165574 chr9 49696975 49697189 + 0 NA intron (ENSMUSG00000039542.16, intron 1 of 1) protein_coding-intron (ENSMUSG00000039542.16, intron 1 of 15) 101840 ENSMUSG00000039542.16 ENSMUSG00000039542 ENSMUST00000217121 Ncam1 protein_coding Interval_64017 chr16 5351809 5352901 + 0 NA intron (ENSMUSG00000116029.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000116029.1, intron 1 of 2) -28198 ENSMUSG00000084573.1 ENSMUSG00000084573 ENSMUST00000122624 n-R5s30 rRNA Interval_105091 chr3 81092241 81092837 + 0 NA intron (ENSMUSG00000028019.9, intron 1 of 5) protein_coding-intron (ENSMUSG00000028019.9, intron 1 of 5) -52102 ENSMUSG00000085106.1 ENSMUSG00000085106 ENSMUST00000146657 Gm16000 antisense Interval_139327 chr6 98941014 98941225 + 0 NA exon (ENSMUSG00000030067.17, exon 14 of 17) protein_coding-exon (ENSMUSG00000030067.17, exon 14 of 17) -80304 ENSMUSG00000107514.1 ENSMUSG00000107514 ENSMUST00000203192 Gm32381 processed_pseudogene Interval_138243 chr6 86558963 86560048 + 0 NA intron (ENSMUSG00000097048.7, intron 4 of 5) antisense-intron (ENSMUSG00000097048.7, intron 2 of 3) 14656 ENSMUSG00000093162.1 ENSMUSG00000093162 ENSMUST00000175421 Gm22184 miRNA Interval_29968 chr11 88429223 88430488 + 0 NA intron (ENSMUSG00000069769.13, intron 2 of 5) protein_coding-intron (ENSMUSG00000069769.13, intron 7 of 13) 3659 ENSMUSG00000084411.2 ENSMUSG00000084411 ENSMUST00000120278 Gm11510 processed_pseudogene Interval_115277 chr4 95144828 95145129 + 0 NA intron (ENSMUSG00000087366.7, intron 3 of 4) antisense-intron (ENSMUSG00000087366.7, intron 2 of 4) -6762 ENSMUSG00000100189.1 ENSMUSG00000100189 ENSMUST00000191391 Gm28096 sense_intronic Interval_86949 chr19 45152909 45154580 + 0 NA TTS (ENSMUSG00000092346.1) antisense-TTS (ENSMUSG00000092346.1) 2275 ENSMUSG00000025215.10 ENSMUSG00000025215 ENSMUST00000174617 Tlx1 protein_coding Interval_40922 chr12 109912783 109913031 + 0 NA exon (ENSMUSG00000112940.1, exon 2 of 2) lincRNA-exon (ENSMUSG00000112940.1, exon 2 of 2) 1122 ENSMUSG00000112940.1 ENSMUSG00000112940 ENSMUST00000223541 4930511J24Rik lincRNA Interval_269 KZ289068.1 432084 432875 + 0 NA NA NA NA NA Interval_108910 chr3 133218948 133219205 + 0 NA intron (ENSMUSG00000040969.14, intron 1 of 3) protein_coding-intron (ENSMUSG00000040969.14, intron 1 of 13) 15873 ENSMUSG00000040969.14 ENSMUSG00000040969 ENSMUST00000161932 Arhgef38 protein_coding Interval_74876 chr17 57020199 57020504 + 0 NA TTS (ENSMUSG00000007670.10) protein_coding-TTS (ENSMUSG00000007670.10) 8882 ENSMUSG00000109739.1 ENSMUSG00000109739 ENSMUST00000210548 Gm17949 protein_coding Interval_152797 chr7 137731384 137732468 + 0 NA Intergenic Intergenic -2340 ENSMUSG00000110090.1 ENSMUSG00000110090 ENSMUST00000209434 Gm45682 lincRNA Interval_114460 chr4 79040797 79041005 + 0 NA Intergenic Intergenic 203808 ENSMUSG00000089543.1 ENSMUSG00000089543 ENSMUST00000158918 Gm25836 snoRNA Interval_88712 chr2 9936063 9936580 + 0 NA intron (ENSMUSG00000025782.12, intron 2 of 4) protein_coding-intron (ENSMUSG00000025782.12, intron 4 of 6) 5430 ENSMUSG00000025782.12 ENSMUSG00000025782 ENSMUST00000114907 Taf3 protein_coding Interval_133905 chr6 14776653 14777180 + 0 NA Intergenic Intergenic -21642 ENSMUSG00000042717.5 ENSMUSG00000042717 ENSMUST00000045096 Ppp1r3a protein_coding Interval_74042 chr17 46241258 46241486 + 0 NA intron (ENSMUSG00000067150.6, intron 10 of 12) protein_coding-intron (ENSMUSG00000067150.6, intron 29 of 31) 6595 ENSMUSG00000067148.15 ENSMUSG00000067148 ENSMUST00000124126 Polr1c protein_coding Interval_127368 chr5 103453639 103454216 + 0 NA intron (ENSMUSG00000034573.14, intron 1 of 17) protein_coding-intron (ENSMUSG00000034573.14, intron 1 of 47) -75639 ENSMUSG00000034573.14 ENSMUSG00000034573 ENSMUST00000200581 Ptpn13 protein_coding Interval_6906 chr1 120576744 120576938 + 0 NA Intergenic Intergenic -25577 ENSMUSG00000058665.8 ENSMUSG00000058665 ENSMUST00000079721 En1 protein_coding Interval_2562 chr1 40380213 40380494 + 0 NA Intergenic Intergenic 26501 ENSMUSG00000103230.1 ENSMUSG00000103230 ENSMUST00000192199 Gm17970 processed_pseudogene Interval_163898 chr9 27893359 27893647 + 0 NA intron (ENSMUSG00000062257.13, intron 1 of 7) protein_coding-intron (ENSMUSG00000062257.13, intron 1 of 7) 102356 ENSMUSG00000062257.13 ENSMUSG00000062257 ENSMUST00000126845 Opcml protein_coding Interval_110282 chr3 155745476 155747085 + 0 NA Intergenic Intergenic 8960 ENSMUSG00000103981.1 ENSMUSG00000103981 ENSMUST00000193016 Gm37449 processed_pseudogene Interval_137118 chr6 67557645 67558594 + 0 NA Intergenic Intergenic 2622 ENSMUSG00000076501.2 ENSMUSG00000076501 ENSMUST00000103302 Igkv2-137 IG_V_gene Interval_36078 chr12 35252739 35253237 + 0 NA Intergenic Intergenic -55903 ENSMUSG00000105488.1 ENSMUSG00000105488 ENSMUST00000199843 Gm44396 miRNA Interval_62124 chr15 87483218 87483442 + 0 NA Intergenic Intergenic -60969 ENSMUSG00000054863.9 ENSMUSG00000054863 ENSMUST00000068088 Tafa5 protein_coding Interval_613 chr1 8935896 8937140 + 0 NA intron (ENSMUSG00000025909.16, intron 3 of 20) protein_coding-intron (ENSMUSG00000025909.16, intron 3 of 19) 15904 ENSMUSG00000025909.16 ENSMUSG00000025909 ENSMUST00000126083 Sntg1 protein_coding Interval_22034 chr11 5901690 5902590 + 0 NA promoter-TSS (ENSMUSG00000041798.15) protein_coding-promoter-TSS (ENSMUSG00000041798.15) -53 ENSMUSG00000041798.15 ENSMUSG00000041798 ENSMUST00000125434 Gck protein_coding Interval_77436 chr17 88706118 88707128 + 0 NA intron (ENSMUSG00000024154.11, intron 6 of 8) protein_coding-intron (ENSMUSG00000024154.11, intron 6 of 8) 37946 ENSMUSG00000024154.11 ENSMUSG00000024154 ENSMUST00000161481 Gtf2a1l protein_coding Interval_139439 chr6 100196139 100196640 + 0 NA Intergenic Intergenic -51743 ENSMUSG00000108269.1 ENSMUSG00000108269 ENSMUST00000203798 Gm18422 transcribed_processed_pseudogene Interval_113949 chr4 61710501 61710859 + 0 NA Intergenic Intergenic 11839 ENSMUSG00000083304.1 ENSMUSG00000083304 ENSMUST00000121741 Mup-ps15 unprocessed_pseudogene Interval_153158 chr7 141939224 141939721 + 0 NA Intergenic Intergenic 10067 ENSMUSG00000092536.2 ENSMUSG00000092536 ENSMUST00000211303 Gm20501 bidirectional_promoter_lncRNA Interval_34348 chr12 3541089 3541508 + 0 NA Intergenic Intergenic -18030 ENSMUSG00000112105.1 ENSMUSG00000112105 ENSMUST00000219719 Rps7-ps2 processed_pseudogene Interval_59173 chr15 46107709 46108789 + 0 NA Intergenic Intergenic 43555 ENSMUSG00000065312.1 ENSMUSG00000065312 ENSMUST00000083378 Gm26063 snRNA Interval_56342 chr14 117892149 117893697 + 0 NA intron (ENSMUSG00000058571.11, intron 7 of 9) protein_coding-intron (ENSMUSG00000058571.11, intron 6 of 8) 60924 ENSMUSG00000098648.1 ENSMUSG00000098648 ENSMUST00000183564 Mir6239 miRNA Interval_56720 chr14 121642859 121643908 + 0 NA intron (ENSMUSG00000025558.19, intron 9 of 55) protein_coding-intron (ENSMUSG00000025558.19, intron 9 of 53) 95478 ENSMUSG00000025558.19 ENSMUSG00000025558 ENSMUST00000238406 Dock9 protein_coding Interval_99769 chr2 164793173 164794596 + 0 NA TTS (ENSMUSG00000050373.13) protein_coding-TTS (ENSMUSG00000050373.13) 2232 ENSMUSG00000050373.13 ENSMUSG00000050373 ENSMUST00000174342 Snx21 protein_coding Interval_95135 chr2 104176447 104177904 + 0 NA intron (ENSMUSG00000068373.15, intron 16 of 20) protein_coding-intron (ENSMUSG00000068373.15, intron 16 of 20) 51063 ENSMUSG00000089606.1 ENSMUSG00000089606 ENSMUST00000158981 Gm22501 snoRNA Interval_106873 chr3 101443410 101443681 + 0 NA intron (ENSMUSG00000042035.11, intron 7 of 10) protein_coding-intron (ENSMUSG00000042035.11, intron 7 of 10) -17892 ENSMUSG00000106137.1 ENSMUSG00000106137 ENSMUST00000196233 Gm42538 antisense Interval_99908 chr2 165747925 165749139 + 0 NA intron (ENSMUSG00000017897.18, intron 4 of 6) protein_coding-intron (ENSMUSG00000017897.18, intron 9 of 15) -81675 ENSMUSG00000081758.1 ENSMUSG00000081758 ENSMUST00000118200 Gm11460 processed_pseudogene Interval_29619 chr11 85497961 85498317 + 0 NA intron (ENSMUSG00000059439.15, intron 5 of 14) protein_coding-intron (ENSMUSG00000059439.15, intron 14 of 24) 4380 ENSMUSG00000087779.1 ENSMUSG00000087779 ENSMUST00000157154 Gm23765 snRNA Interval_162643 chr9 7191282 7191498 + 0 NA intron (ENSMUSG00000032002.10, intron 4 of 7) protein_coding-intron (ENSMUSG00000032002.10, intron 4 of 6) -12095 ENSMUSG00000032002.10 ENSMUSG00000032002 ENSMUST00000216770 Dcun1d5 protein_coding Interval_141698 chr6 133745174 133745872 + 0 NA Intergenic Intergenic -13145 ENSMUSG00000108241.1 ENSMUSG00000108241 ENSMUST00000204187 Gm44252 processed_pseudogene Interval_57167 chr15 7115068 7117303 + 0 NA intron (ENSMUSG00000054263.12, intron 1 of 4) protein_coding-intron (ENSMUSG00000054263.12, intron 1 of 4) 25571 ENSMUSG00000054263.12 ENSMUSG00000054263 ENSMUST00000171588 Lifr protein_coding Interval_143120 chr6 149482292 149482986 + 0 NA intron (ENSMUSG00000003452.15, intron 1 of 9) protein_coding-intron (ENSMUSG00000003452.15, intron 1 of 9) -48166 ENSMUSG00000082072.1 ENSMUSG00000082072 ENSMUST00000119145 Gm15785 processed_pseudogene Interval_50754 chr14 19162544 19162730 + 0 NA exon (ENSMUSG00000091557.2, exon 3 of 5) unprocessed_pseudogene-exon (ENSMUSG00000091557.2, exon 3 of 5) 2942 ENSMUSG00000091557.2 ENSMUSG00000091557 ENSMUST00000171982 Gm8584 unprocessed_pseudogene Interval_139460 chr6 100332556 100332830 + 0 NA Intergenic Intergenic -45945 ENSMUSG00000072872.3 ENSMUSG00000072872 ENSMUST00000205164 Rybp protein_coding Interval_139837 chr6 110492572 110492870 + 0 NA Intergenic Intergenic 114667 ENSMUSG00000108247.1 ENSMUSG00000108247 ENSMUST00000204363 Gm19039 processed_pseudogene Interval_113220 chr4 50367304 50367889 + 0 NA Intergenic Intergenic 80850 ENSMUSG00000095394.1 ENSMUSG00000095394 ENSMUST00000104120 Gm25485 snoRNA Interval_108478 chr3 127535403 127535768 + 0 NA Intergenic Intergenic -9643 ENSMUSG00000076252.1 ENSMUSG00000076252 ENSMUST00000102297 Mir302b miRNA Interval_52582 chr14 47671578 47671785 + 0 NA intron (ENSMUSG00000021843.17, intron 3 of 38) protein_coding-intron (ENSMUSG00000021843.17, intron 3 of 41) 7894 ENSMUSG00000021843.17 ENSMUSG00000021843 ENSMUST00000190857 Ktn1 protein_coding Interval_22089 chr11 6285990 6286267 + 0 NA Intergenic Intergenic -5857 ENSMUSG00000020456.17 ENSMUSG00000020456 ENSMUST00000081894 Ogdh protein_coding Interval_164430 chr9 36968139 36969309 + 0 NA intron (ENSMUSG00000035934.16, intron 2 of 4) protein_coding-intron (ENSMUSG00000035934.16, intron 3 of 12) -47034 ENSMUSG00000093721.1 ENSMUSG00000093721 ENSMUST00000176020 Gm3896 antisense Interval_12062 chr1 189269715 189269957 + 0 NA intron (ENSMUSG00000037624.15, intron 2 of 5) protein_coding-intron (ENSMUSG00000037624.15, intron 3 of 6) 7987 ENSMUSG00000102824.1 ENSMUSG00000102824 ENSMUST00000191699 Pdcd5-ps processed_pseudogene Interval_126600 chr5 90652652 90652914 + 0 NA Intergenic Intergenic -42982 ENSMUSG00000029370.10 ENSMUSG00000029370 ENSMUST00000201436 Rassf6 protein_coding Interval_74952 chr17 57893541 57894217 + 0 NA intron (ENSMUSG00000038048.8, intron 3 of 23) protein_coding-intron (ENSMUSG00000038048.8, intron 3 of 23) -54658 ENSMUSG00000071052.4 ENSMUSG00000071052 ENSMUST00000095218 Rpl7a-ps5 processed_pseudogene Interval_153058 chr7 141099739 141100859 + 0 NA TTS (ENSMUSG00000054662.8) protein_coding-TTS (ENSMUSG00000054662.8) 273 ENSMUSG00000025494.8 ENSMUSG00000025494 ENSMUST00000209352 Sigirr protein_coding Interval_56419 chr14 118637283 118639175 + 0 NA intron (ENSMUSG00000032849.14, intron 3 of 29) protein_coding-intron (ENSMUSG00000032849.14, intron 4 of 30) -45757 ENSMUSG00000098433.1 ENSMUSG00000098433 ENSMUST00000184391 Mir6391 miRNA Interval_89632 chr2 23618790 23619249 + 0 NA Intergenic Intergenic -61199 ENSMUSG00000083729.1 ENSMUSG00000083729 ENSMUST00000121498 Sh3d2c-ps1 processed_pseudogene Interval_166245 chr9 57764479 57766234 + 0 NA promoter-TSS (ENSMUSG00000032316.8) protein_coding-promoter-TSS (ENSMUSG00000032316.8) -167 ENSMUSG00000032316.8 ENSMUSG00000032316 ENSMUST00000215158 Clk3 protein_coding Interval_160408 chr8 109059322 109059617 + 0 NA Intergenic Intergenic -15776 ENSMUSG00000097393.8 ENSMUSG00000097393 ENSMUST00000181098 D030068K23Rik lincRNA Interval_55268 chr14 79814598 79814815 + 0 NA Intergenic Intergenic -43394 ENSMUSG00000036422.10 ENSMUSG00000036422 ENSMUST00000194214 Pcdh8 protein_coding Interval_166135 chr9 56949717 56951476 + 0 NA promoter-TSS (ENSMUSG00000055334.4) protein_coding-promoter-TSS (ENSMUSG00000055334.4) -282 ENSMUSG00000055334.4 ENSMUSG00000055334 ENSMUST00000068856 Snupn protein_coding Interval_42400 chr13 13075654 13075951 + 0 NA promoter-TSS (ENSMUSG00000113150.1) processed_pseudogene-promoter-TSS (ENSMUSG00000113150.1) -316 ENSMUSG00000113150.1 ENSMUSG00000113150 ENSMUST00000220846 Gm18263 processed_pseudogene Interval_145002 chr7 29364190 29364518 + 0 NA intron (ENSMUSG00000030583.16, intron 12 of 22) protein_coding-intron (ENSMUSG00000030583.16, intron 12 of 22) 13251 ENSMUSG00000030583.16 ENSMUSG00000030583 ENSMUST00000183085 Sipa1l3 protein_coding Interval_94665 chr2 93154386 93154710 + 0 NA Intergenic Intergenic -33000 ENSMUSG00000068735.14 ENSMUSG00000068735 ENSMUST00000143164 Trp53i11 protein_coding Interval_102543 chr3 27616624 27616837 + 0 NA intron (ENSMUSG00000039286.12, intron 4 of 26) protein_coding-intron (ENSMUSG00000039286.12, intron 3 of 25) -31735 ENSMUSG00000092695.1 ENSMUSG00000092695 ENSMUST00000174954 Mir3092 miRNA Interval_168429 chr9 80216664 80217433 + 0 NA promoter-TSS (ENSMUSG00000033577.18) protein_coding-promoter-TSS (ENSMUSG00000033577.18) 48402 ENSMUSG00000099016.1 ENSMUSG00000099016 ENSMUST00000183413 Gm27227 antisense Interval_25891 chr11 52358695 52361696 + 0 NA promoter-TSS (ENSMUSG00000020402.11) protein_coding-promoter-TSS (ENSMUSG00000020402.11) -13905 ENSMUSG00000020402.11 ENSMUSG00000020402 ENSMUST00000153339 Vdac1 protein_coding Interval_81428 chr18 60694151 60696279 + 0 NA intron (ENSMUSG00000054008.9, intron 11 of 14) protein_coding-intron (ENSMUSG00000054008.9, intron 10 of 13) 37935 ENSMUSG00000054008.9 ENSMUSG00000054008 ENSMUST00000237070 Ndst1 protein_coding Interval_149915 chr7 102564969 102565845 + 0 NA promoter-TSS (ENSMUSG00000030966.13) protein_coding-promoter-TSS (ENSMUSG00000030966.13) 39 ENSMUSG00000030966.13 ENSMUSG00000030966 ENSMUST00000210261 Trim21 protein_coding Interval_23774 chr11 26103215 26104436 + 0 NA intron (ENSMUSG00000032985.15, intron 1 of 1) protein_coding-intron (ENSMUSG00000032985.15, intron 1 of 6) -98415 ENSMUSG00000099015.1 ENSMUSG00000099015 ENSMUST00000185114 Mir6372 miRNA Interval_101259 chr2 179928724 179929960 + 0 NA promoter-TSS (ENSMUSG00000039117.16) protein_coding-promoter-TSS (ENSMUSG00000039117.16) -46651 ENSMUSG00000085704.1 ENSMUSG00000085704 ENSMUST00000150145 4921531C22Rik processed_transcript Interval_11471 chr1 182071674 182072421 + 0 NA TTS (ENSMUSG00000103379.1) processed_pseudogene-TTS (ENSMUSG00000103379.1) 644 ENSMUSG00000103379.1 ENSMUSG00000103379 ENSMUST00000193768 Gm37177 processed_pseudogene Interval_6213 chr1 102092020 102093271 + 0 NA Intergenic Intergenic 13935 ENSMUSG00000077295.1 ENSMUSG00000077295 ENSMUST00000104107 Gm24122 snoRNA Interval_83562 chr18 89612215 89612880 + 0 NA intron (ENSMUSG00000073514.4, intron 1 of 7) protein_coding-intron (ENSMUSG00000073514.4, intron 1 of 7) -52478 ENSMUSG00000073514.4 ENSMUSG00000073514 ENSMUST00000160328 Dok6 protein_coding Interval_17955 chr10 81059775 81060871 + 0 NA promoter-TSS (ENSMUSG00000004937.6) protein_coding-promoter-TSS (ENSMUSG00000004937.6) -179 ENSMUSG00000004937.6 ENSMUSG00000004937 ENSMUST00000220202 Sgta protein_coding Interval_13201 chr10 13003239 13004007 + 0 NA Intergenic Intergenic -1720 ENSMUSG00000078348.4 ENSMUSG00000078348 ENSMUST00000105139 Sf3b5 protein_coding Interval_118575 chr4 132592804 132593339 + 0 NA Intergenic Intergenic 29004 ENSMUSG00000056529.7 ENSMUSG00000056529 ENSMUST00000070690 Ptafr protein_coding Interval_107269 chr3 105099783 105100388 + 0 NA Intergenic Intergenic 33241 ENSMUSG00000051788.4 ENSMUSG00000051788 ENSMUST00000070584 4930564D02Rik protein_coding Interval_34261 chr11 121782002 121782313 + 0 NA Intergenic Intergenic -20950 ENSMUSG00000085126.1 ENSMUSG00000085126 ENSMUST00000153767 Gm12589 lincRNA Interval_100684 chr2 171542299 171543484 + 0 NA Intergenic Intergenic -236460 ENSMUSG00000088505.1 ENSMUSG00000088505 ENSMUST00000157880 Gm26489 scaRNA Interval_18380 chr10 85442176 85442701 + 0 NA intron (ENSMUSG00000020042.15, intron 1 of 16) protein_coding-intron (ENSMUSG00000020042.15, intron 1 of 9) 108537 ENSMUSG00000087895.1 ENSMUSG00000087895 ENSMUST00000157270 Gm25281 miRNA Interval_24318 chr11 32329290 32329739 + 0 NA Intergenic Intergenic -18306 ENSMUSG00000040711.8 ENSMUSG00000040711 ENSMUST00000138771 Sh3pxd2b protein_coding Interval_80123 chr18 37743498 37744307 + 0 NA exon (ENSMUSG00000103088.1, exon 1 of 4) protein_coding-exon (ENSMUSG00000103088.1, exon 1 of 4) 1808 ENSMUSG00000103088.1 ENSMUSG00000103088 ENSMUST00000003599 Pcdhgb6 protein_coding Interval_131187 chr5 135674536 135675534 + 0 NA intron (ENSMUSG00000005514.14, intron 1 of 6) protein_coding-intron (ENSMUSG00000005514.14, intron 1 of 6) 450 ENSMUSG00000005514.14 ENSMUSG00000005514 ENSMUST00000132084 Por protein_coding Interval_165620 chr9 50452002 50453151 + 0 NA Intergenic Intergenic -41951 ENSMUSG00000032068.14 ENSMUSG00000032068 ENSMUST00000188047 Plet1 protein_coding Interval_56198 chr14 112022487 112022966 + 0 NA Intergenic Intergenic 8512 ENSMUSG00000115558.1 ENSMUSG00000115558 ENSMUST00000227711 Gm49000 TEC Interval_78761 chr18 20482851 20483404 + 0 NA Intergenic Intergenic -16188 ENSMUSG00000117480.1 ENSMUSG00000117480 ENSMUST00000234005 Gm5688 processed_pseudogene Interval_82282 chr18 70013444 70014276 + 0 NA intron (ENSMUSG00000024511.15, intron 2 of 6) protein_coding-intron (ENSMUSG00000024511.15, intron 1 of 5) 44183 ENSMUSG00000086824.1 ENSMUSG00000086824 ENSMUST00000149958 4930448D08Rik antisense Interval_107644 chr3 109208706 109208893 + 0 NA Intergenic Intergenic -15932 ENSMUSG00000083717.1 ENSMUSG00000083717 ENSMUST00000120957 Gm13865 processed_pseudogene Interval_121072 chr4 152574299 152575037 + 0 NA Intergenic Intergenic 96490 ENSMUSG00000039577.17 ENSMUSG00000039577 ENSMUST00000123635 Nphp4 protein_coding Interval_86828 chr19 44194731 44195741 + 0 NA Intergenic Intergenic -2794 ENSMUSG00000037578.4 ENSMUSG00000037578 ENSMUST00000161357 Pkd2l1 protein_coding Interval_144832 chr7 28507128 28507793 + 0 NA intron (ENSMUSG00000109336.1, intron 1 of 12) protein_coding-intron (ENSMUSG00000109336.1, intron 1 of 12) 2995 ENSMUSG00000059128.3 ENSMUSG00000059128 ENSMUST00000081684 Ifnl2 protein_coding Interval_163920 chr9 28515823 28516026 + 0 NA intron (ENSMUSG00000062257.13, intron 1 of 2) protein_coding-intron (ENSMUSG00000062257.13, intron 1 of 6) 223176 ENSMUSG00000106021.1 ENSMUSG00000106021 ENSMUST00000199274 Gm44316 miRNA Interval_96294 chr2 121354808 121355563 + 0 NA promoter-TSS (ENSMUSG00000033526.16) protein_coding-promoter-TSS (ENSMUSG00000033526.16) -7733 ENSMUSG00000000308.14 ENSMUSG00000000308 ENSMUST00000153040 Ckmt1 protein_coding Interval_161619 chr8 121604296 121605077 + 0 NA promoter-TSS (ENSMUSG00000061410.6) protein_coding-promoter-TSS (ENSMUSG00000061410.6) -172 ENSMUSG00000061410.6 ENSMUSG00000061410 ENSMUST00000134212 Zcchc14 protein_coding Interval_14600 chr10 36898033 36898992 + 0 NA Intergenic Intergenic -93254 ENSMUSG00000019777.16 ENSMUSG00000019777 ENSMUST00000123010 Hdac2 protein_coding Interval_7792 chr1 133716427 133717086 + 0 NA intron (ENSMUSG00000026463.17, intron 17 of 19) protein_coding-intron (ENSMUSG00000026463.17, intron 17 of 20) 9889 ENSMUSG00000098606.1 ENSMUSG00000098606 ENSMUST00000183597 Mir6903 miRNA Interval_165402 chr9 47529672 47531873 + 0 NA intron (ENSMUSG00000032076.20, intron 1 of 8) protein_coding-intron (ENSMUSG00000032076.20, intron 1 of 8) 420 ENSMUSG00000032076.20 ENSMUSG00000032076 ENSMUST00000034581 Cadm1 protein_coding Interval_168528 chr9 83110995 83111204 + 0 NA promoter-TSS (ENSMUSG00000066456.14) protein_coding-promoter-TSS (ENSMUSG00000066456.14) 1469 ENSMUSG00000066456.14 ENSMUSG00000066456 ENSMUST00000185359 Hmgn3 protein_coding Interval_136143 chr6 51468991 51471260 + 0 NA promoter-TSS (ENSMUSG00000029836.15) protein_coding-promoter-TSS (ENSMUSG00000029836.15) -241 ENSMUSG00000004980.16 ENSMUSG00000004980 ENSMUST00000205204 Hnrnpa2b1 protein_coding Interval_103193 chr3 36532978 36533701 + 0 NA promoter-TSS (ENSMUSG00000085007.3) protein_coding-promoter-TSS (ENSMUSG00000085007.3) -955 ENSMUSG00000085007.3 ENSMUSG00000085007 ENSMUST00000199064 Gm11549 protein_coding Interval_158639 chr8 84915064 84916050 + 0 NA exon (ENSMUSG00000053693.16, exon 24 of 26) protein_coding-exon (ENSMUSG00000053693.16, exon 24 of 26) 6910 ENSMUSG00000003812.13 ENSMUSG00000003812 ENSMUST00000148573 Dnase2a protein_coding Interval_28504 chr11 76383007 76383473 + 0 NA intron (ENSMUSG00000020844.6, intron 1 of 1) protein_coding-intron (ENSMUSG00000020844.6, intron 1 of 7) 15828 ENSMUSG00000020844.6 ENSMUSG00000020844 ENSMUST00000131472 Nxn protein_coding Interval_62183 chr15 88650789 88652401 + 0 NA Intergenic Intergenic 51293 ENSMUSG00000054117.8 ENSMUSG00000054117 ENSMUST00000066949 Zdhhc25 protein_coding Interval_61488 chr15 81936347 81938701 + 0 NA intron (ENSMUSG00000042109.8, intron 1 of 1) protein_coding-intron (ENSMUSG00000042109.8, intron 1 of 3) 732 ENSMUSG00000042109.8 ENSMUSG00000042109 ENSMUST00000152678 Csdc2 protein_coding Interval_101945 chr3 12662858 12664325 + 0 NA Intergenic Intergenic 32331 ENSMUSG00000104177.1 ENSMUSG00000104177 ENSMUST00000194635 Gm2429 processed_pseudogene Interval_71839 chr17 26443151 26443672 + 0 NA exon (ENSMUSG00000034413.14, exon 5 of 5) protein_coding-exon (ENSMUSG00000034413.14, exon 5 of 5) 20746 ENSMUSG00000118232.1 ENSMUSG00000118232 ENSMUST00000236943 Gm50269 lincRNA Interval_128551 chr5 113966003 113967120 + 0 NA TTS (ENSMUSG00000042121.16) protein_coding-TTS (ENSMUSG00000042121.16) 195 ENSMUSG00000042121.16 ENSMUSG00000042121 ENSMUST00000162322 Ssh1 protein_coding Interval_36612 chr12 51437834 51438055 + 0 NA intron (ENSMUSG00000020952.10, intron 5 of 6) protein_coding-intron (ENSMUSG00000020952.10, intron 19 of 24) 60363 ENSMUSG00000020952.10 ENSMUSG00000020952 ENSMUST00000218138 Scfd1 protein_coding Interval_140920 chr6 122761084 122761310 + 0 NA intron (ENSMUSG00000003153.10, intron 2 of 4) protein_coding-intron (ENSMUSG00000003153.10, intron 2 of 4) 18760 ENSMUSG00000003153.10 ENSMUSG00000003153 ENSMUST00000168801 Slc2a3 protein_coding Interval_7270 chr1 128344049 128344679 + 0 NA promoter-TSS (ENSMUSG00000026355.11) protein_coding-promoter-TSS (ENSMUSG00000026355.11) 1678 ENSMUSG00000026355.11 ENSMUSG00000026355 ENSMUST00000188755 Mcm6 protein_coding Interval_148730 chr7 84719266 84720866 + 0 NA intron (ENSMUSG00000085236.3, intron 1 of 4) antisense-intron (ENSMUSG00000085236.3, intron 1 of 4) -30183 ENSMUSG00000030629.15 ENSMUSG00000030629 ENSMUST00000207975 Zfand6 protein_coding Interval_62855 chr15 97448004 97449123 + 0 NA Intergenic Intergenic 87361 ENSMUSG00000044250.8 ENSMUSG00000044250 ENSMUST00000226495 Pced1b protein_coding Interval_64183 chr16 8891428 8891850 + 0 NA Intergenic Intergenic -18468 ENSMUSG00000087982.1 ENSMUSG00000087982 ENSMUST00000157357 Gm22224 rRNA Interval_112943 chr4 46304458 46305721 + 0 NA intron (ENSMUSG00000087383.7, intron 4 of 4) antisense-intron (ENSMUSG00000087383.7, intron 4 of 4) -22207 ENSMUSG00000080816.1 ENSMUSG00000080816 ENSMUST00000119110 Gm12447 processed_pseudogene Interval_106676 chr3 98419189 98420081 + 0 NA intron (ENSMUSG00000050064.14, intron 1 of 4) protein_coding-intron (ENSMUSG00000050064.14, intron 1 of 2) 29341 ENSMUSG00000106107.1 ENSMUSG00000106107 ENSMUST00000187850 Gm43190 sense_intronic Interval_41548 chr12 116202363 116203286 + 0 NA Intergenic Intergenic 29511 ENSMUSG00000065685.1 ENSMUSG00000065685 ENSMUST00000083751 Gm23732 snRNA Interval_99303 chr2 158799539 158799739 + 0 NA intron (ENSMUSG00000027655.14, intron 1 of 1) protein_coding-intron (ENSMUSG00000027655.14, intron 1 of 20) 18231 ENSMUSG00000027654.2 ENSMUSG00000027654 ENSMUST00000151801 Fam83d protein_coding Interval_158736 chr8 85647301 85647517 + 0 NA intron (ENSMUSG00000036902.11, intron 7 of 8) protein_coding-intron (ENSMUSG00000036902.11, intron 7 of 8) 41947 ENSMUSG00000109731.1 ENSMUSG00000109731 ENSMUST00000211727 Gm45425 lincRNA Interval_70438 chr17 10240224 10240993 + 0 NA intron (ENSMUSG00000062078.15, intron 1 of 4) protein_coding-intron (ENSMUSG00000062078.15, intron 3 of 6) 78753 ENSMUSG00000062078.15 ENSMUSG00000062078 ENSMUST00000233684 Qk protein_coding Interval_79811 chr18 35255344 35255709 + 0 NA TTS (ENSMUSG00000037815.7) protein_coding-TTS (ENSMUSG00000037815.7) 6153 ENSMUSG00000037815.7 ENSMUSG00000037815 ENSMUST00000237475 Ctnna1 protein_coding Interval_94499 chr2 91699968 91700386 + 0 NA intron (ENSMUSG00000027244.14, intron 1 of 15) protein_coding-intron (ENSMUSG00000027244.14, intron 1 of 16) -10740 ENSMUSG00000027243.8 ENSMUSG00000027243 ENSMUST00000111322 Harbi1 protein_coding Interval_136120 chr6 51206478 51208248 + 0 NA Intergenic Intergenic 62547 ENSMUSG00000065505.1 ENSMUSG00000065505 ENSMUST00000083571 Mir148a miRNA Interval_172209 chrX 9272245 9273776 + 0 NA exon (ENSMUSG00000015342.6, exon 1 of 3) protein_coding-exon (ENSMUSG00000015342.6, exon 1 of 3) 254 ENSMUSG00000015342.6 ENSMUSG00000015342 ENSMUST00000015486 Xk protein_coding Interval_73565 chr17 40529995 40532370 + 0 NA TTS (ENSMUSG00000090747.3) protein_coding-TTS (ENSMUSG00000090747.3) -6123 ENSMUSG00000117265.1 ENSMUSG00000117265 ENSMUST00000233166 Gm49847 TEC Interval_172821 chrX 50605038 50605803 + 0 NA intron (ENSMUSG00000085396.7, intron 7 of 19) processed_transcript-intron (ENSMUSG00000085396.7, intron 4 of 6) -40537 ENSMUSG00000085396.7 ENSMUSG00000085396 ENSMUST00000148530 Firre processed_transcript Interval_5148 chr1 86039908 86040166 + 0 NA Intergenic Intergenic -5826 ENSMUSG00000026227.11 ENSMUSG00000026227 ENSMUST00000165824 2810459M11Rik protein_coding Interval_42628 chr13 17203142 17204249 + 0 NA intron (ENSMUSG00000055137.7, intron 12 of 13) protein_coding-intron (ENSMUSG00000055137.7, intron 12 of 13) -2326 ENSMUSG00000094754.1 ENSMUSG00000094754 ENSMUST00000178071 Gm25020 snRNA Interval_137674 chr6 78817857 78818294 + 0 NA Intergenic Intergenic -93092 ENSMUSG00000094980.1 ENSMUSG00000094980 ENSMUST00000083352 Gm23727 snRNA Interval_38904 chr12 83708878 83709456 + 0 NA intron (ENSMUSG00000019969.14, intron 2 of 3) protein_coding-intron (ENSMUSG00000019969.14, intron 3 of 11) 20979 ENSMUSG00000019969.14 ENSMUSG00000019969 ENSMUST00000221072 Psen1 protein_coding Interval_41733 chr12 118514601 118514940 + 0 NA Intergenic Intergenic -9736 ENSMUSG00000065348.1 ENSMUSG00000065348 ENSMUST00000083414 Gm25577 snRNA Interval_46425 chr13 65159456 65160110 + 0 NA Intergenic Intergenic 1525 ENSMUSG00000089161.1 ENSMUSG00000089161 ENSMUST00000158536 Gm24130 snoRNA Interval_155361 chr8 32426093 32426453 + 0 NA intron (ENSMUSG00000062991.9, intron 1 of 12) protein_coding-intron (ENSMUSG00000062991.9, intron 1 of 8) 240144 ENSMUSG00000089370.1 ENSMUSG00000089370 ENSMUST00000158745 Gm22140 snRNA Interval_71635 chr17 25013875 25014523 + 0 NA intron (ENSMUSG00000038002.9, intron 1 of 20) protein_coding-intron (ENSMUSG00000038002.9, intron 1 of 20) 1589 ENSMUSG00000038002.9 ENSMUSG00000038002 ENSMUST00000233169 Cramp1l protein_coding Interval_71873 chr17 26656970 26657512 + 0 NA TTS (ENSMUSG00000001576.15) protein_coding-TTS (ENSMUSG00000001576.15) -18916 ENSMUSG00000015575.15 ENSMUSG00000015575 ENSMUST00000167352 Atp6v0e protein_coding Interval_98812 chr2 155207388 155207666 + 0 NA intron (ENSMUSG00000027598.16, intron 17 of 20) protein_coding-intron (ENSMUSG00000027598.16, intron 17 of 24) -8267 ENSMUSG00000082596.1 ENSMUSG00000082596 ENSMUST00000119431 Gm14227 processed_pseudogene Interval_144759 chr7 28070687 28071167 + 0 NA promoter-TSS (ENSMUSG00000047730.17) protein_coding-promoter-TSS (ENSMUSG00000047730.17) 16195 ENSMUSG00000109262.1 ENSMUSG00000109262 ENSMUST00000208234 Gm44744 lincRNA Interval_119913 chr4 140872531 140873884 + 0 NA intron (ENSMUSG00000087045.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000087045.1, intron 1 of 2) 514 ENSMUSG00000087045.1 ENSMUSG00000087045 ENSMUST00000140588 4930515B02Rik lincRNA Interval_146723 chr7 49711179 49711832 + 0 NA Intergenic Intergenic -47610 ENSMUSG00000039745.8 ENSMUSG00000039745 ENSMUST00000207895 Htatip2 protein_coding Interval_108257 chr3 123079760 123080602 + 0 NA exon (ENSMUSG00000050315.14, exon 5 of 5) protein_coding-exon (ENSMUSG00000050315.14, exon 5 of 5) -36446 ENSMUSG00000106114.1 ENSMUSG00000106114 ENSMUST00000197420 Gm43286 processed_pseudogene Interval_23591 chr11 23618245 23618577 + 0 NA intron (ENSMUSG00000042208.15, intron 6 of 21) protein_coding-intron (ENSMUSG00000042208.15, intron 4 of 19) 8450 ENSMUSG00000089103.1 ENSMUSG00000089103 ENSMUST00000158478 Gm23114 rRNA Interval_24514 chr11 33928603 33928936 + 0 NA intron (ENSMUSG00000053519.17, intron 1 of 7) protein_coding-intron (ENSMUSG00000053519.17, intron 1 of 3) -34244 ENSMUSG00000020155.2 ENSMUSG00000020155 ENSMUST00000020362 Kcnmb1 protein_coding Interval_160944 chr8 115895209 115896588 + 0 NA Intergenic Intergenic 76173 ENSMUSG00000110620.1 ENSMUSG00000110620 ENSMUST00000212988 Gm45733 lincRNA Interval_62648 chr15 95947918 95949222 + 0 NA intron (ENSMUSG00000064210.7, intron 14 of 20) protein_coding-intron (ENSMUSG00000064210.7, intron 13 of 19) 45559 ENSMUSG00000115049.1 ENSMUSG00000115049 ENSMUST00000227616 Gm49172 processed_transcript Interval_51688 chr14 31392660 31393107 + 0 NA intron (ENSMUSG00000021892.14, intron 3 of 10) protein_coding-intron (ENSMUSG00000021892.14, intron 3 of 8) 14502 ENSMUSG00000021892.14 ENSMUSG00000021892 ENSMUST00000147586 Sh3bp5 protein_coding Interval_84079 chr19 7088161 7089170 + 0 NA promoter-TSS (ENSMUSG00000117901.1) antisense-promoter-TSS (ENSMUSG00000117901.1) -244 ENSMUSG00000117901.1 ENSMUSG00000117901 ENSMUST00000236559 AC109619.1 antisense Interval_6999 chr1 121670167 121670978 + 0 NA Intergenic Intergenic -24723 ENSMUSG00000102006.1 ENSMUSG00000102006 ENSMUST00000185259 Gm28591 processed_pseudogene Interval_149927 chr7 102704468 102704651 + 0 NA intron (ENSMUSG00000070423.6, intron 1 of 1) protein_coding-intron (ENSMUSG00000070423.6, intron 1 of 1) 2344 ENSMUSG00000070423.6 ENSMUSG00000070423 ENSMUST00000094124 Olfr558 protein_coding Interval_1808 chr1 33907012 33908803 + 0 NA promoter-TSS (ENSMUSG00000042182.16) protein_coding-promoter-TSS (ENSMUSG00000042182.16) -14548 ENSMUSG00000103596.1 ENSMUSG00000103596 ENSMUST00000193333 Gm37354 TEC Interval_115321 chr4 96260481 96261076 + 0 NA intron (ENSMUSG00000084286.1, intron 2 of 3) unprocessed_pseudogene-intron (ENSMUSG00000084286.1, intron 2 of 3) 13492 ENSMUSG00000084286.1 ENSMUSG00000084286 ENSMUST00000122267 Cyp2j15-ps unprocessed_pseudogene Interval_168109 chr9 76713040 76713224 + 0 NA Intergenic Intergenic 3615 ENSMUSG00000077144.1 ENSMUSG00000077144 ENSMUST00000103956 Gm22938 snoRNA Interval_27739 chr11 69735584 69735840 + 0 NA TTS (ENSMUSG00000005198.15) protein_coding-TTS (ENSMUSG00000005198.15) 1636 ENSMUSG00000005198.15 ENSMUSG00000005198 ENSMUST00000151586 Polr2a protein_coding Interval_40014 chr12 100499904 100500137 + 0 NA exon (ENSMUSG00000033530.8, exon 2 of 2) protein_coding-exon (ENSMUSG00000033530.8, exon 2 of 2) -33722 ENSMUSG00000033530.8 ENSMUSG00000033530 ENSMUST00000220614 Ttc7b protein_coding Interval_173448 chrX 93966786 93967150 + 0 NA Intergenic Intergenic -1714 ENSMUSG00000081044.8 ENSMUSG00000081044 ENSMUST00000120624 AU015836 protein_coding Interval_53316 chr14 56100572 56101710 + 0 NA intron (ENSMUSG00000040314.2, intron 1 of 2) protein_coding-intron (ENSMUSG00000040314.2, intron 2 of 4) 634 ENSMUSG00000040314.2 ENSMUSG00000040314 ENSMUST00000225312 Ctsg protein_coding Interval_9083 chr1 153486261 153487978 + 0 NA intron (ENSMUSG00000042699.11, intron 1 of 4) protein_coding-intron (ENSMUSG00000042699.11, intron 1 of 27) -8980 ENSMUSG00000042699.11 ENSMUSG00000042699 ENSMUST00000189425 Dhx9 protein_coding Interval_72707 chr17 31658169 31659393 + 0 NA promoter-TSS (ENSMUSG00000061613.13) protein_coding-promoter-TSS (ENSMUSG00000061613.13) -17 ENSMUSG00000061613.13 ENSMUSG00000061613 ENSMUST00000235969 U2af1 protein_coding Interval_59772 chr15 59143071 59143460 + 0 NA Intergenic Intergenic -61260 ENSMUSG00000022353.10 ENSMUSG00000022353 ENSMUST00000227797 Mtss1 protein_coding Interval_74793 chr17 56565767 56567132 + 0 NA exon (ENSMUSG00000042625.16, exon 15 of 21) protein_coding-exon (ENSMUSG00000042625.16, exon 15 of 21) 6049 ENSMUSG00000042625.16 ENSMUSG00000042625 ENSMUST00000146070 Safb2 protein_coding Interval_22299 chr11 8601323 8601847 + 0 NA intron (ENSMUSG00000020422.14, intron 2 of 30) protein_coding-intron (ENSMUSG00000020422.14, intron 2 of 30) 63096 ENSMUSG00000020422.14 ENSMUSG00000020422 ENSMUST00000134823 Tns3 protein_coding Interval_75670 chr17 70453747 70454138 + 0 NA intron (ENSMUSG00000003279.17, intron 1 of 11) protein_coding-intron (ENSMUSG00000003279.17, intron 5 of 14) 301640 ENSMUSG00000097282.1 ENSMUSG00000097282 ENSMUST00000181546 5031415H12Rik antisense Interval_25283 chr11 46106196 46107726 + 0 NA intron (ENSMUSG00000011256.16, intron 5 of 22) protein_coding-intron (ENSMUSG00000011256.16, intron 5 of 22) 4691 ENSMUSG00000098942.1 ENSMUSG00000098942 ENSMUST00000184230 Mir8100 miRNA Interval_4678 chr1 76459950 76460168 + 0 NA intron (ENSMUSG00000100827.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000100827.1, intron 1 of 1) -29074 ENSMUSG00000100553.6 ENSMUSG00000100553 ENSMUST00000189132 Gm17751 lincRNA Interval_59494 chr15 54456036 54456231 + 0 NA intron (ENSMUSG00000038591.3, intron 3 of 5) protein_coding-intron (ENSMUSG00000038591.3, intron 3 of 5) 3147 ENSMUSG00000115211.1 ENSMUSG00000115211 ENSMUST00000227121 Gm18152 processed_pseudogene Interval_156539 chr8 50120155 50120990 + 0 NA intron (ENSMUSG00000109838.1, intron 3 of 4) lincRNA-intron (ENSMUSG00000109838.1, intron 3 of 4) -107188 ENSMUSG00000110375.1 ENSMUSG00000110375 ENSMUST00000209853 Gm45323 lincRNA Interval_66730 chr16 36720089 36723120 + 0 NA exon (ENSMUSG00000022900.14, exon 6 of 8) protein_coding-exon (ENSMUSG00000022900.14, exon 6 of 8) -13983 ENSMUSG00000116821.1 ENSMUSG00000116821 ENSMUST00000232393 Gm8538 processed_pseudogene Interval_133999 chr6 17620806 17622374 + 0 NA Intergenic Intergenic -15445 ENSMUSG00000015733.13 ENSMUSG00000015733 ENSMUST00000142592 Capza2 protein_coding Interval_159639 chr8 95951145 95952808 + 0 NA Intergenic Intergenic 30447 ENSMUSG00000110506.1 ENSMUSG00000110506 ENSMUST00000212919 Gm8637 processed_pseudogene Interval_62542 chr15 94522973 94523663 + 0 NA exon (ENSMUSG00000033356.3, exon 9 of 9) protein_coding-exon (ENSMUSG00000033356.3, exon 9 of 9) 20175 ENSMUSG00000033356.3 ENSMUSG00000033356 ENSMUST00000134061 Pus7l protein_coding Interval_173621 chrX 101128317 101128576 + 0 NA intron (ENSMUSG00000046032.16, intron 4 of 5) protein_coding-intron (ENSMUSG00000046032.16, intron 4 of 5) 13106 ENSMUSG00000088114.1 ENSMUSG00000088114 ENSMUST00000157489 Gm24061 snoRNA Interval_85158 chr19 23208864 23209319 + 0 NA intron (ENSMUSG00000024943.9, intron 23 of 23) protein_coding-intron (ENSMUSG00000024943.9, intron 24 of 24) 59660 ENSMUSG00000080626.1 ENSMUSG00000080626 ENSMUST00000116976 Mir1192 miRNA Interval_3094 chr1 53209839 53210635 + 0 NA intron (ENSMUSG00000026098.13, intron 7 of 10) protein_coding-intron (ENSMUSG00000026098.13, intron 6 of 12) 14124 ENSMUSG00000100763.1 ENSMUSG00000100763 ENSMUST00000191402 Gm28777 antisense Interval_81809 chr18 64930851 64931903 + 0 NA intron (ENSMUSG00000024589.18, intron 1 of 29) protein_coding-intron (ENSMUSG00000024589.18, intron 1 of 29) -42886 ENSMUSG00000114210.2 ENSMUSG00000114210 ENSMUST00000224731 A330084C13Rik antisense Interval_146080 chr7 43707262 43707598 + 0 NA intron (ENSMUSG00000097178.7, intron 4 of 6) processed_transcript-intron (ENSMUSG00000097178.7, intron 4 of 6) -5969 ENSMUSG00000054046.7 ENSMUSG00000054046 ENSMUST00000205457 Klk13 protein_coding Interval_90646 chr2 31662854 31663368 + 0 NA Intergenic Intergenic 2641 ENSMUSG00000083143.2 ENSMUSG00000083143 ENSMUST00000122301 Gm13424 processed_pseudogene Interval_94088 chr2 83752522 83753566 + 0 NA intron (ENSMUSG00000027087.11, intron 3 of 3) protein_coding-intron (ENSMUSG00000027087.11, intron 3 of 29) 6821 ENSMUSG00000085335.1 ENSMUSG00000085335 ENSMUST00000152569 Gm13684 processed_transcript Interval_160260 chr8 107519342 107520402 + 0 NA intron (ENSMUSG00000031930.11, intron 3 of 3) protein_coding-intron (ENSMUSG00000031930.11, intron 8 of 23) -31372 ENSMUSG00000065439.1 ENSMUSG00000065439 ENSMUST00000083505 Mir140 miRNA Interval_35078 chr12 17152525 17153362 + 0 NA Intergenic Intergenic 23945 ENSMUSG00000051726.6 ENSMUSG00000051726 ENSMUST00000170580 Kcnf1 protein_coding Interval_29348 chr11 83362023 83362795 + 0 NA intron (ENSMUSG00000035152.14, intron 14 of 20) protein_coding-intron (ENSMUSG00000035152.14, intron 14 of 21) 4592 ENSMUSG00000077217.1 ENSMUSG00000077217 ENSMUST00000104029 Gm23951 snoRNA Interval_99299 chr2 158777651 158778675 + 0 NA intron (ENSMUSG00000027654.2, intron 1 of 3) protein_coding-intron (ENSMUSG00000027654.2, intron 1 of 3) -3245 ENSMUSG00000027654.2 ENSMUSG00000027654 ENSMUST00000151801 Fam83d protein_coding Interval_80377 chr18 40343578 40345541 + 0 NA intron (ENSMUSG00000051401.7, intron 2 of 2) protein_coding-intron (ENSMUSG00000051401.7, intron 1 of 1) -1610 ENSMUSG00000117943.1 ENSMUSG00000117943 ENSMUST00000235668 Gm50403 TEC Interval_57781 chr15 19857364 19857810 + 0 NA Intergenic Intergenic 101183 ENSMUSG00000115233.1 ENSMUSG00000115233 ENSMUST00000226721 Gm46498 processed_pseudogene Interval_25385 chr11 47086134 47086630 + 0 NA intron (ENSMUSG00000020354.15, intron 5 of 6) protein_coding-intron (ENSMUSG00000020354.15, intron 5 of 7) 211969 ENSMUSG00000082818.1 ENSMUSG00000082818 ENSMUST00000122081 Gm12175 processed_pseudogene Interval_174317 chrX 144344478 144345752 + 0 NA intron (ENSMUSG00000041718.16, intron 11 of 26) protein_coding-intron (ENSMUSG00000041718.16, intron 6 of 18) -23860 ENSMUSG00000080922.1 ENSMUSG00000080922 ENSMUST00000121333 Gm2214 processed_pseudogene Interval_43337 chr13 29356423 29357513 + 0 NA intron (ENSMUSG00000006191.17, intron 14 of 16) protein_coding-intron (ENSMUSG00000006191.17, intron 14 of 15) -120348 ENSMUSG00000086423.1 ENSMUSG00000086423 ENSMUST00000137593 Gm11364 sense_intronic Interval_125694 chr5 73317169 73318152 + 0 NA Intergenic Intergenic 6296 ENSMUSG00000107331.1 ENSMUSG00000107331 ENSMUST00000202887 Gm42732 TEC Interval_7001 chr1 121706149 121706400 + 0 NA promoter-TSS (ENSMUSG00000102488.1) TEC-promoter-TSS (ENSMUSG00000102488.1) -241 ENSMUSG00000102488.1 ENSMUSG00000102488 ENSMUST00000192952 Gm37920 TEC Interval_49407 chr13 111770499 111771529 + 0 NA intron (ENSMUSG00000021754.17, intron 3 of 5) protein_coding-intron (ENSMUSG00000021754.17, intron 3 of 19) -19641 ENSMUSG00000021754.17 ENSMUSG00000021754 ENSMUST00000145055 Map3k1 protein_coding Interval_137033 chr6 66765672 66766717 + 0 NA Intergenic Intergenic -6155 ENSMUSG00000093504.2 ENSMUSG00000093504 ENSMUST00000175772 Vmn1r-ps24 transcribed_unprocessed_pseudogene Interval_89719 chr2 24974629 24976148 + 0 NA promoter-TSS (ENSMUSG00000036833.16) protein_coding-promoter-TSS (ENSMUSG00000036833.16) -399 ENSMUSG00000036850.4 ENSMUSG00000036850 ENSMUST00000194392 Mrpl41 protein_coding Interval_91266 chr2 37108015 37108294 + 0 NA intron (ENSMUSG00000075377.2, intron 1 of 2) protein_coding-intron (ENSMUSG00000075377.2, intron 1 of 2) -1644 ENSMUSG00000068948.4 ENSMUSG00000068948 ENSMUST00000119049 Olfr363-ps unprocessed_pseudogene Interval_73164 chr17 35198978 35199237 + 0 NA TTS (ENSMUSG00000024401.14) protein_coding-TTS (ENSMUSG00000024401.14) 2897 ENSMUSG00000024401.14 ENSMUSG00000024401 ENSMUST00000167924 Tnf protein_coding Interval_6363 chr1 106346743 106346959 + 0 NA intron (ENSMUSG00000044340.7, intron 8 of 16) protein_coding-intron (ENSMUSG00000044340.7, intron 8 of 16) 55136 ENSMUSG00000100247.1 ENSMUSG00000100247 ENSMUST00000187918 A530053M12Rik lincRNA Interval_33287 chr11 115716584 115718719 + 0 NA Intergenic Intergenic 7157 ENSMUSG00000083394.2 ENSMUSG00000083394 ENSMUST00000118352 Gm11703 processed_pseudogene Interval_164176 chr9 32204306 32204894 + 0 NA intron (ENSMUSG00000041444.14, intron 9 of 21) protein_coding-intron (ENSMUSG00000041444.14, intron 4 of 4) -19992 ENSMUSG00000041444.14 ENSMUSG00000041444 ENSMUST00000174730 Arhgap32 protein_coding Interval_147522 chr7 68000527 68001402 + 0 NA intron (ENSMUSG00000005533.10, intron 1 of 20) protein_coding-intron (ENSMUSG00000005533.10, intron 1 of 20) -114379 ENSMUSG00000109152.1 ENSMUSG00000109152 ENSMUST00000208544 Gm44666 processed_pseudogene Interval_75106 chr17 63478218 63478624 + 0 NA intron (ENSMUSG00000023965.13, intron 3 of 8) protein_coding-intron (ENSMUSG00000023965.13, intron 3 of 8) -26710 ENSMUSG00000023965.13 ENSMUSG00000023965 ENSMUST00000090318 Fbxl17 protein_coding Interval_39777 chr12 98180040 98181019 + 0 NA Intergenic Intergenic 35999 ENSMUSG00000021003.10 ENSMUSG00000021003 ENSMUST00000221322 Galc protein_coding Interval_133471 chr6 5425196 5425741 + 0 NA intron (ENSMUSG00000042607.15, intron 4 of 5) protein_coding-intron (ENSMUSG00000042607.15, intron 4 of 5) 35041 ENSMUSG00000042607.15 ENSMUSG00000042607 ENSMUST00000183358 Asb4 protein_coding Interval_12086 chr1 189661789 189662118 + 0 NA intron (ENSMUSG00000026605.14, intron 11 of 17) protein_coding-intron (ENSMUSG00000026605.14, intron 11 of 11) 9189 ENSMUSG00000026605.14 ENSMUSG00000026605 ENSMUST00000194165 Cenpf protein_coding Interval_125655 chr5 73070928 73071796 + 0 NA promoter-TSS (ENSMUSG00000070733.13) protein_coding-promoter-TSS (ENSMUSG00000070733.13) -26208 ENSMUSG00000107171.1 ENSMUSG00000107171 ENSMUST00000202292 Gm42572 TEC Interval_117436 chr4 123669430 123670598 + 0 NA intron (ENSMUSG00000087307.1, intron 2 of 2) protein_coding-intron (ENSMUSG00000028649.21, intron 1 of 92) 4133 ENSMUSG00000087307.1 ENSMUSG00000087307 ENSMUST00000138861 Gm12925 antisense Interval_109346 chr3 139438353 139438635 + 0 NA intron (ENSMUSG00000047940.13, intron 11 of 13) protein_coding-intron (ENSMUSG00000047940.13, intron 11 of 13) -20631 ENSMUSG00000065675.1 ENSMUSG00000065675 ENSMUST00000083741 Gm24260 snRNA Interval_26671 chr11 59575126 59576027 + 0 NA intron (ENSMUSG00000059610.5, intron 1 of 2) protein_coding-intron (ENSMUSG00000059610.5, intron 1 of 1) 593 ENSMUSG00000059610.5 ENSMUSG00000059610 ENSMUST00000071943 Olfr222 protein_coding Interval_153055 chr7 141087903 141089222 + 0 NA promoter-TSS (ENSMUSG00000054065.12) protein_coding-promoter-TSS (ENSMUSG00000054065.12) 8787 ENSMUSG00000054065.12 ENSMUSG00000054065 ENSMUST00000161142 Pkp3 protein_coding Interval_37782 chr12 71960723 71960968 + 0 NA intron (ENSMUSG00000034574.10, intron 17 of 25) protein_coding-intron (ENSMUSG00000034574.10, intron 17 of 25) 88414 ENSMUSG00000114155.1 ENSMUSG00000114155 ENSMUST00000221336 Gm7986 processed_pseudogene Interval_74106 chr17 46591336 46591698 + 0 NA exon (ENSMUSG00000023972.10, exon 2 of 20) protein_coding-exon (ENSMUSG00000023972.10, exon 2 of 20) -18567 ENSMUSG00000023972.10 ENSMUSG00000023972 ENSMUST00000044442 Ptk7 protein_coding Interval_68200 chr16 67877640 67877897 + 0 NA Intergenic Intergenic 129593 ENSMUSG00000116666.1 ENSMUSG00000116666 ENSMUST00000232463 Gm49649 processed_pseudogene Interval_57272 chr15 8269409 8270748 + 0 NA intron (ENSMUSG00000039801.7, intron 52 of 52) protein_coding-intron (ENSMUSG00000039801.7, intron 52 of 52) 46935 ENSMUSG00000039801.7 ENSMUSG00000039801 ENSMUST00000128772 Cplane1 protein_coding Interval_22184 chr11 6894372 6895955 + 0 NA Intergenic Intergenic -32859 ENSMUSG00000082333.1 ENSMUSG00000082333 ENSMUST00000118142 Gm11984 processed_pseudogene Interval_63965 chr16 4885413 4887070 + 0 NA promoter-TSS (ENSMUSG00000022517.17) protein_coding-promoter-TSS (ENSMUSG00000022517.17) -145 ENSMUSG00000022517.17 ENSMUSG00000022517 ENSMUST00000230108 Mgrn1 protein_coding Interval_83193 chr18 82678679 82678979 + 0 NA intron (ENSMUSG00000041258.18, intron 3 of 31) protein_coding-intron (ENSMUSG00000041258.18, intron 3 of 29) 4739 ENSMUSG00000041258.18 ENSMUSG00000041258 ENSMUST00000225002 Zfp236 protein_coding Interval_39600 chr12 91383753 91384856 + 0 NA promoter-TSS (ENSMUSG00000061533.16) protein_coding-promoter-TSS (ENSMUSG00000061533.16) -259 ENSMUSG00000020963.15 ENSMUSG00000020963 ENSMUST00000186437 Tshr protein_coding Interval_11541 chr1 182561429 182563198 + 0 NA Intergenic Intergenic -2694 ENSMUSG00000038599.14 ENSMUSG00000038599 ENSMUST00000192671 Capn8 protein_coding Interval_55475 chr14 87864357 87865385 + 0 NA Intergenic Intergenic 125995 ENSMUSG00000115452.1 ENSMUSG00000115452 ENSMUST00000226882 Gm18812 transcribed_processed_pseudogene Interval_108376 chr3 126363542 126364798 + 0 NA exon (ENSMUSG00000046561.9, exon 1 of 2) protein_coding-exon (ENSMUSG00000046561.9, exon 1 of 2) 486 ENSMUSG00000046561.9 ENSMUSG00000046561 ENSMUST00000093976 Arsj protein_coding Interval_68786 chr16 86378195 86378401 + 0 NA Intergenic Intergenic 142127 ENSMUSG00000116799.1 ENSMUSG00000116799 ENSMUST00000231827 Gm32357 lincRNA Interval_72606 chr17 30990279 30992301 + 0 NA intron (ENSMUSG00000054134.14, intron 14 of 22) protein_coding-intron (ENSMUSG00000054134.14, intron 13 of 22) -21285 ENSMUSG00000118169.1 ENSMUSG00000118169 ENSMUST00000236274 Gm50249 antisense Interval_54175 chr14 65980616 65981110 + 0 NA exon (ENSMUSG00000022037.15, exon 8 of 9) protein_coding-exon (ENSMUSG00000022037.15, exon 8 of 9) 11145 ENSMUSG00000022037.15 ENSMUSG00000022037 ENSMUST00000152903 Clu protein_coding Interval_79622 chr18 34052034 34053741 + 0 NA exon (ENSMUSG00000117961.1, exon 1 of 2) lincRNA-exon (ENSMUSG00000117961.1, exon 1 of 2) 147 ENSMUSG00000117961.1 ENSMUSG00000117961 ENSMUST00000235466 Gm50265 lincRNA Interval_23443 chr11 22661892 22662655 + 0 NA Intergenic Intergenic -35609 ENSMUSG00000083008.1 ENSMUSG00000083008 ENSMUST00000119022 Gm12053 processed_pseudogene Interval_160685 chr8 111588275 111588998 + 0 NA intron (ENSMUSG00000033545.14, intron 1 of 1) protein_coding-intron (ENSMUSG00000033545.14, intron 1 of 3) 39951 ENSMUSG00000031958.16 ENSMUSG00000031958 ENSMUST00000070004 Ldhd protein_coding Interval_114353 chr4 74230795 74231956 + 0 NA Intergenic Intergenic 3178 ENSMUSG00000083767.1 ENSMUSG00000083767 ENSMUST00000118689 Gm11405 processed_pseudogene Interval_158673 chr8 85076082 85077242 + 0 NA promoter-TSS (ENSMUSG00000005150.16) protein_coding-promoter-TSS (ENSMUSG00000005150.16) 3604 ENSMUSG00000060038.14 ENSMUSG00000060038 ENSMUST00000132356 Dhps protein_coding Interval_166762 chr9 62481101 62481410 + 0 NA intron (ENSMUSG00000041729.15, intron 2 of 3) protein_coding-intron (ENSMUSG00000041729.15, intron 2 of 11) -32107 ENSMUSG00000041729.15 ENSMUSG00000041729 ENSMUST00000123379 Coro2b protein_coding Interval_159635 chr8 95901202 95902510 + 0 NA Intergenic Intergenic -8718 ENSMUSG00000110634.1 ENSMUSG00000110634 ENSMUST00000212248 Gm45895 lincRNA Interval_145472 chr7 35025833 35026866 + 0 NA intron (ENSMUSG00000063931.14, intron 4 of 5) protein_coding-intron (ENSMUSG00000063931.14, intron 11 of 14) 26188 ENSMUSG00000108486.1 ENSMUSG00000108486 ENSMUST00000205869 Gm44836 sense_intronic Interval_16797 chr10 68222680 68222973 + 0 NA intron (ENSMUSG00000019947.10, intron 3 of 9) protein_coding-intron (ENSMUSG00000019947.10, intron 3 of 10) 55914 ENSMUSG00000019947.10 ENSMUSG00000019947 ENSMUST00000218425 Arid5b protein_coding Interval_14909 chr10 41006456 41008358 + 0 NA Intergenic Intergenic -27788 ENSMUSG00000111098.1 ENSMUSG00000111098 ENSMUST00000214667 Gm48057 lincRNA Interval_103505 chr3 45376897 45378610 + 0 NA promoter-TSS (ENSMUSG00000049100.15) protein_coding-promoter-TSS (ENSMUSG00000049100.15) -4880 ENSMUSG00000049100.15 ENSMUSG00000049100 ENSMUST00000195655 Pcdh10 protein_coding Interval_165838 chr9 53680791 53681857 + 0 NA TTS (ENSMUSG00000086914.1) antisense-TTS (ENSMUSG00000086914.1) 8959 ENSMUSG00000082465.1 ENSMUSG00000082465 ENSMUST00000118010 Rps6-ps3 processed_pseudogene Interval_145329 chr7 33758049 33758951 + 0 NA Intergenic Intergenic 14701 ENSMUSG00000078753.3 ENSMUSG00000078753 ENSMUST00000108087 Scgb1b24 protein_coding Interval_129407 chr5 119785917 119786452 + 0 NA Intergenic Intergenic 21685 ENSMUSG00000107053.1 ENSMUSG00000107053 ENSMUST00000202127 1700021F13Rik lincRNA Interval_146206 chr7 44688803 44689151 + 0 NA Intergenic Intergenic -19765 ENSMUSG00000066500.5 ENSMUSG00000066500 ENSMUST00000207182 Izumo2 protein_coding Interval_118861 chr4 134115699 134120256 + 0 NA intron (ENSMUSG00000012126.16, intron 8 of 13) protein_coding-intron (ENSMUSG00000012126.16, intron 4 of 10) 10760 ENSMUSG00000028843.8 ENSMUSG00000028843 ENSMUST00000136408 Sh3bgrl3 protein_coding Interval_92104 chr2 53211744 53212363 + 0 NA intron (ENSMUSG00000026960.6, intron 3 of 3) protein_coding-intron (ENSMUSG00000026960.6, intron 3 of 3) 20327 ENSMUSG00000026960.6 ENSMUSG00000026960 ENSMUST00000028336 Arl6ip6 protein_coding Interval_114422 chr4 75942124 75942464 + 0 NA exon (ENSMUSG00000028399.18, exon 22 of 22) protein_coding-exon (ENSMUSG00000028399.18, exon 22 of 22) -39139 ENSMUSG00000081844.1 ENSMUSG00000081844 ENSMUST00000117371 Gm11241 processed_pseudogene Interval_112821 chr4 45287709 45288559 + 0 NA Intergenic Intergenic -25964 ENSMUSG00000035601.9 ENSMUSG00000035601 ENSMUST00000145756 Trmt10b protein_coding Interval_9894 chr1 163871904 163872121 + 0 NA intron (ENSMUSG00000026585.13, intron 17 of 20) protein_coding-intron (ENSMUSG00000026585.13, intron 17 of 19) -57778 ENSMUSG00000026584.14 ENSMUSG00000026584 ENSMUST00000162920 Scyl3 protein_coding Interval_6284 chr1 105355489 105357150 + 0 NA promoter-TSS (ENSMUSG00000097482.2) antisense-promoter-TSS (ENSMUSG00000097482.2) 391 ENSMUSG00000047496.6 ENSMUSG00000047496 ENSMUST00000172299 Rnf152 protein_coding Interval_141032 chr6 124485181 124486134 + 0 NA Intergenic Intergenic -7456 ENSMUSG00000038527.9 ENSMUSG00000038527 ENSMUST00000049124 C1rl protein_coding Interval_57016 chr15 4286022 4286556 + 0 NA Intergenic Intergenic -41644 ENSMUSG00000115032.1 ENSMUSG00000115032 ENSMUST00000227247 Gm49301 processed_pseudogene Interval_43070 chr13 23592051 23592229 + 0 NA intron (ENSMUSG00000047246.7, intron 1 of 1) protein_coding-intron (ENSMUSG00000047246.7, intron 1 of 1) 10542 ENSMUSG00000061482.7 ENSMUSG00000061482 ENSMUST00000102968 H4c4 protein_coding Interval_111890 chr4 32281874 32282081 + 0 NA intron (ENSMUSG00000040270.16, intron 1 of 1) protein_coding-intron (ENSMUSG00000040270.16, intron 1 of 7) 30216 ENSMUSG00000087049.1 ENSMUSG00000087049 ENSMUST00000133451 Bach2it1 sense_intronic Interval_149024 chr7 92280707 92281428 + 0 NA intron (ENSMUSG00000052572.19, intron 1 of 7) protein_coding-intron (ENSMUSG00000052572.19, intron 13 of 22) -127117 ENSMUSG00000109574.1 ENSMUSG00000109574 ENSMUST00000207479 B230206I08Rik TEC Interval_72434 chr17 29789714 29790427 + 0 NA Intergenic Intergenic 29317 ENSMUSG00000117489.1 ENSMUSG00000117489 ENSMUST00000234919 Gm50016 lincRNA Interval_104575 chr3 68453214 68453512 + 0 NA intron (ENSMUSG00000027777.15, intron 1 of 6) protein_coding-intron (ENSMUSG00000027777.15, intron 1 of 7) -40128 ENSMUSG00000027777.15 ENSMUSG00000027777 ENSMUST00000182360 Schip1 protein_coding Interval_118512 chr4 132191396 132191598 + 0 NA intron (ENSMUSG00000040025.17, intron 3 of 3) protein_coding-intron (ENSMUSG00000040025.17, intron 3 of 3) 19312 ENSMUSG00000040025.17 ENSMUSG00000040025 ENSMUST00000102570 Ythdf2 protein_coding Interval_156878 chr8 61404283 61404509 + 0 NA Intergenic Intergenic -23009 ENSMUSG00000109610.1 ENSMUSG00000109610 ENSMUST00000210343 Gm7432 processed_pseudogene Interval_111178 chr4 14260809 14262181 + 0 NA Intergenic Intergenic 21877 ENSMUSG00000087919.1 ENSMUSG00000087919 ENSMUST00000157294 Gm24908 snoRNA Interval_98532 chr2 153047820 153048487 + 0 NA intron (ENSMUSG00000042631.7, intron 1 of 2) protein_coding-intron (ENSMUSG00000042631.7, intron 1 of 2) 16301 ENSMUSG00000042631.7 ENSMUSG00000042631 ENSMUST00000037235 Xkr7 protein_coding Interval_130172 chr5 124741987 124742628 + 0 NA intron (ENSMUSG00000038011.15, intron 9 of 77) protein_coding-intron (ENSMUSG00000038011.15, intron 9 of 78) -17228 ENSMUSG00000106082.4 ENSMUSG00000106082 ENSMUST00000199356 4930404A12Rik antisense Interval_17937 chr10 80906348 80907454 + 0 NA promoter-TSS (ENSMUSG00000062075.13) protein_coding-promoter-TSS (ENSMUSG00000062075.13) -6116 ENSMUSG00000020219.7 ENSMUSG00000020219 ENSMUST00000218149 Timm13 protein_coding Interval_30350 chr11 93794807 93795625 + 0 NA Intergenic Intergenic 80927 ENSMUSG00000054079.12 ENSMUSG00000054079 ENSMUST00000134807 Utp18 protein_coding Interval_127502 chr5 104576669 104577652 + 0 NA Intergenic Intergenic 50702 ENSMUSG00000118625.1 ENSMUSG00000118625 ENSMUST00000239343 AC123687.1 transcribed_unprocessed_pseudogene Interval_145907 chr7 41598773 41600395 + 0 NA intron (ENSMUSG00000091474.2, intron 1 of 5) protein_coding-intron (ENSMUSG00000091474.2, intron 1 of 5) 4692 ENSMUSG00000108482.1 ENSMUSG00000108482 ENSMUST00000205343 Gm45078 processed_pseudogene Interval_119471 chr4 137791265 137791909 + 0 NA intron (ENSMUSG00000028766.10, intron 1 of 11) protein_coding-intron (ENSMUSG00000028766.10, intron 1 of 11) -9396 ENSMUSG00000028766.10 ENSMUSG00000028766 ENSMUST00000143757 Alpl protein_coding Interval_136829 chr6 61080188 61081785 + 0 NA Intergenic Intergenic -11731 ENSMUSG00000108087.1 ENSMUSG00000108087 ENSMUST00000203362 Gm43893 lincRNA Interval_136642 chr6 56901546 56902418 + 0 NA promoter-TSS (ENSMUSG00000029780.14) protein_coding-promoter-TSS (ENSMUSG00000029780.14) 4600 ENSMUSG00000108260.1 ENSMUSG00000108260 ENSMUST00000204973 Gm3793 TEC Interval_157541 chr8 71291368 71291642 + 0 NA intron (ENSMUSG00000004677.17, intron 2 of 39) protein_coding-intron (ENSMUSG00000004677.17, intron 2 of 39) 18791 ENSMUSG00000004677.17 ENSMUSG00000004677 ENSMUST00000212412 Myo9b protein_coding Interval_37379 chr12 66201602 66201990 + 0 NA Intergenic Intergenic -67469 ENSMUSG00000113531.1 ENSMUSG00000113531 ENSMUST00000222565 Gm2915 processed_pseudogene Interval_164794 chr9 41943363 41943579 + 0 NA Intergenic Intergenic 41099 ENSMUSG00000049313.8 ENSMUSG00000049313 ENSMUST00000139133 Sorl1 protein_coding Interval_76225 chr17 78163108 78163894 + 0 NA Intergenic Intergenic 5511 ENSMUSG00000117493.1 ENSMUSG00000117493 ENSMUST00000235049 Gm50030 processed_pseudogene Interval_28499 chr11 76363170 76364664 + 0 NA intron (ENSMUSG00000020844.6, intron 1 of 1) protein_coding-intron (ENSMUSG00000020844.6, intron 1 of 7) 35151 ENSMUSG00000020844.6 ENSMUSG00000020844 ENSMUST00000131472 Nxn protein_coding Interval_32052 chr11 104771336 104771658 + 0 NA intron (ENSMUSG00000040838.10, intron 30 of 187) protein_coding-intron (ENSMUSG00000040838.10, intron 30 of 187) -42919 ENSMUSG00000081513.1 ENSMUSG00000081513 ENSMUST00000120176 Gm11623 processed_pseudogene Interval_45493 chr13 55451851 55452589 + 0 NA promoter-TSS (ENSMUSG00000099058.1) miRNA-promoter-TSS (ENSMUSG00000099058.1) -886 ENSMUSG00000099058.1 ENSMUSG00000099058 ENSMUST00000185186 Mir6943 miRNA Interval_89448 chr2 20724059 20725084 + 0 NA intron (ENSMUSG00000036617.17, intron 1 of 7) protein_coding-intron (ENSMUSG00000036617.17, intron 6 of 18) -11337 ENSMUSG00000086418.1 ENSMUSG00000086418 ENSMUST00000137186 Gm13362 antisense Interval_157911 chr8 75587478 75588646 + 0 NA intron (ENSMUSG00000031620.16, intron 5 of 13) protein_coding-intron (ENSMUSG00000031620.16, intron 4 of 12) 8123 ENSMUSG00000103054.1 ENSMUSG00000103054 ENSMUST00000192721 Gm38270 TEC Interval_128106 chr5 110940347 110940573 + 0 NA intron (ENSMUSG00000033209.17, intron 2 of 22) protein_coding-intron (ENSMUSG00000033209.17, intron 2 of 23) 35216 ENSMUSG00000081104.1 ENSMUSG00000081104 ENSMUST00000121895 Gm15989 processed_pseudogene Interval_153782 chr8 8519654 8519916 + 0 NA Intergenic Intergenic 31483 ENSMUSG00000108941.1 ENSMUSG00000108941 ENSMUST00000208416 D530014G21Rik lincRNA Interval_80970 chr18 51758405 51758668 + 0 NA Intergenic Intergenic 107345 ENSMUSG00000069379.3 ENSMUSG00000069379 ENSMUST00000091905 Gm4950 processed_pseudogene Interval_132434 chr5 144896533 144896737 + 0 NA TTS (ENSMUSG00000098822.1) miRNA-TTS (ENSMUSG00000098822.1) 181 ENSMUSG00000098822.1 ENSMUSG00000098822 ENSMUST00000183852 Mir7039 miRNA Interval_90127 chr2 28418021 28418752 + 0 NA Intergenic Intergenic -29555 ENSMUSG00000035829.13 ENSMUSG00000035829 ENSMUST00000040324 Ppp1r26 protein_coding Interval_99517 chr2 162914604 162916226 + 0 NA Intergenic Intergenic 7491 ENSMUSG00000082514.1 ENSMUSG00000082514 ENSMUST00000122376 Gm11452 processed_pseudogene Interval_16523 chr10 63347819 63348926 + 0 NA intron (ENSMUSG00000020063.16, intron 3 of 13) protein_coding-intron (ENSMUSG00000020063.16, intron 3 of 13) -5481 ENSMUSG00000085372.1 ENSMUSG00000085372 ENSMUST00000128807 Gm16145 antisense Interval_129824 chr5 122553696 122553890 + 0 NA intron (ENSMUSG00000029469.14, intron 4 of 4) protein_coding-intron (ENSMUSG00000029469.14, intron 18 of 18) 14311 ENSMUSG00000105815.1 ENSMUSG00000105815 ENSMUST00000197208 Gm43541 TEC Interval_139853 chr6 111445707 111446883 + 0 NA intron (ENSMUSG00000056755.13, intron 9 of 9) protein_coding-intron (ENSMUSG00000056755.13, intron 8 of 10) -49449 ENSMUSG00000056755.13 ENSMUSG00000056755 ENSMUST00000174310 Grm7 protein_coding Interval_127371 chr5 103519277 103519453 + 0 NA intron (ENSMUSG00000034573.14, intron 9 of 17) protein_coding-intron (ENSMUSG00000034573.14, intron 9 of 47) -10201 ENSMUSG00000034573.14 ENSMUSG00000034573 ENSMUST00000200581 Ptpn13 protein_coding Interval_80404 chr18 41896949 41897151 + 0 NA intron (ENSMUSG00000056671.7, intron 5 of 6) protein_coding-intron (ENSMUSG00000056671.7, intron 5 of 5) -1737 ENSMUSG00000118266.1 ENSMUSG00000118266 ENSMUST00000235276 Gm18371 processed_pseudogene Interval_58228 chr15 31226469 31226769 + 0 NA intron (ENSMUSG00000039168.15, intron 1 of 3) protein_coding-intron (ENSMUSG00000039168.15, intron 1 of 3) 2059 ENSMUSG00000039168.15 ENSMUSG00000039168 ENSMUST00000185618 Dap protein_coding Interval_38328 chr12 77260579 77261741 + 0 NA intron (ENSMUSG00000021065.16, intron 1 of 1) protein_coding-intron (ENSMUSG00000021065.16, intron 1 of 11) -22497 ENSMUSG00000112150.1 ENSMUSG00000112150 ENSMUST00000219513 9530018F02Rik bidirectional_promoter_lncRNA Interval_65407 chr16 22185285 22185915 + 0 NA Intergenic Intergenic -38644 ENSMUSG00000064686.1 ENSMUSG00000064686 ENSMUST00000082752 Gm25810 snRNA Interval_79749 chr18 34888969 34889288 + 0 NA Intergenic Intergenic 27921 ENSMUSG00000038418.7 ENSMUSG00000038418 ENSMUST00000165033 Egr1 protein_coding Interval_131260 chr5 136045025 136046258 + 0 NA exon (ENSMUSG00000042985.7, exon 6 of 6) protein_coding-exon (ENSMUSG00000042985.7, exon 6 of 6) 7145 ENSMUSG00000042985.7 ENSMUSG00000042985 ENSMUST00000062606 Upk3b protein_coding Interval_131286 chr5 136172521 136172920 + 0 NA Intergenic Intergenic -2087 ENSMUSG00000039747.11 ENSMUSG00000039747 ENSMUST00000198268 Orai2 protein_coding Interval_124621 chr5 52503949 52504719 + 0 NA Intergenic Intergenic -34497 ENSMUSG00000104829.1 ENSMUSG00000104829 ENSMUST00000198876 Gm43685 antisense Interval_82526 chr18 74960651 74962499 + 0 NA promoter-TSS (ENSMUSG00000053846.5) protein_coding-promoter-TSS (ENSMUSG00000053846.5) -313 ENSMUSG00000053846.5 ENSMUSG00000053846 ENSMUST00000235783 Lipg protein_coding Interval_43895 chr13 37912981 37913451 + 0 NA intron (ENSMUSG00000039087.17, intron 6 of 9) protein_coding-intron (ENSMUSG00000039087.17, intron 5 of 11) -33800 ENSMUSG00000039087.17 ENSMUSG00000039087 ENSMUST00000162849 Rreb1 protein_coding Interval_7546 chr1 132127699 132127888 + 0 NA intron (ENSMUSG00000026437.11, intron 2 of 16) protein_coding-intron (ENSMUSG00000026437.11, intron 1 of 15) -11538 ENSMUSG00000026437.11 ENSMUSG00000026437 ENSMUST00000189733 Cdk18 protein_coding Interval_156356 chr8 47658130 47658455 + 0 NA Intergenic Intergenic 15397 ENSMUSG00000063049.4 ENSMUSG00000063049 ENSMUST00000125536 Ing2 protein_coding Interval_142178 chr6 137822139 137822528 + 0 NA intron (ENSMUSG00000030225.11, intron 6 of 7) protein_coding-intron (ENSMUSG00000030225.11, intron 6 of 8) -13224 ENSMUSG00000030225.11 ENSMUSG00000030225 ENSMUST00000204723 Dera protein_coding Interval_58922 chr15 40038167 40038877 + 0 NA Intergenic Intergenic 4612 ENSMUSG00000115712.1 ENSMUSG00000115712 ENSMUST00000226568 Gm49255 processed_pseudogene Interval_94072 chr2 83655288 83655528 + 0 NA intron (ENSMUSG00000027091.14, intron 2 of 4) protein_coding-intron (ENSMUSG00000027091.14, intron 2 of 9) -1212 ENSMUSG00000027091.14 ENSMUSG00000027091 ENSMUST00000134789 Zc3h15 protein_coding Interval_48338 chr13 98295982 98296390 + 0 NA intron (ENSMUSG00000096330.8, intron 2 of 5) protein_coding-intron (ENSMUSG00000096330.8, intron 3 of 6) -6318 ENSMUSG00000096330.8 ENSMUSG00000096330 ENSMUST00000186911 Gm21976 protein_coding Interval_141626 chr6 131433145 131434563 + 0 NA promoter-TSS (ENSMUSG00000107832.1) processed_pseudogene-promoter-TSS (ENSMUSG00000107832.1) 57 ENSMUSG00000107832.1 ENSMUSG00000107832 ENSMUST00000204695 Gm18688 processed_pseudogene Interval_153837 chr8 9470268 9472135 + 0 NA intron (ENSMUSG00000079157.4, intron 3 of 3) protein_coding-intron (ENSMUSG00000079157.4, intron 1 of 2) 12109 ENSMUSG00000109551.1 ENSMUSG00000109551 ENSMUST00000208065 4930435N07Rik TEC Interval_26781 chr11 60458192 60458402 + 0 NA intron (ENSMUSG00000020537.9, intron 2 of 6) protein_coding-intron (ENSMUSG00000020537.9, intron 2 of 12) -3210 ENSMUSG00000020537.9 ENSMUSG00000020537 ENSMUST00000155731 Drg2 protein_coding Interval_71508 chr17 24216650 24217132 + 0 NA intron (ENSMUSG00000024118.14, intron 7 of 8) protein_coding-intron (ENSMUSG00000024118.14, intron 8 of 9) 3862 ENSMUSG00000024118.14 ENSMUSG00000024118 ENSMUST00000149916 Tedc2 protein_coding Interval_31137 chr11 98371402 98372869 + 0 NA exon (ENSMUSG00000018167.10, exon 2 of 15) protein_coding-exon (ENSMUSG00000018167.10, exon 2 of 15) -11676 ENSMUSG00000007877.2 ENSMUSG00000007877 ENSMUST00000008021 Tcap protein_coding Interval_2483 chr1 39680303 39680951 + 0 NA TTS (ENSMUSG00000057173.8) protein_coding-TTS (ENSMUSG00000057173.8) -29153 ENSMUSG00000050967.5 ENSMUSG00000050967 ENSMUST00000053355 Creg2 protein_coding Interval_124640 chr5 52673198 52674958 + 0 NA Intergenic Intergenic -25598 ENSMUSG00000029173.12 ENSMUSG00000029173 ENSMUST00000123856 Sepsecs protein_coding Interval_108473 chr3 127497904 127499830 + 0 NA exon (ENSMUSG00000032826.19, exon 1 of 1) protein_coding-exon (ENSMUSG00000032826.19, exon 1 of 1) -14033 ENSMUSG00000104957.1 ENSMUSG00000104957 ENSMUST00000196862 Gm43354 processed_pseudogene Interval_154231 chr8 13612756 13613007 + 0 NA intron (ENSMUSG00000031453.16, intron 4 of 6) protein_coding-intron (ENSMUSG00000031453.16, intron 3 of 23) -50420 ENSMUSG00000031452.15 ENSMUSG00000031452 ENSMUST00000132787 1700029H14Rik protein_coding Interval_135792 chr6 47390958 47391800 + 0 NA Intergenic Intergenic 41710 ENSMUSG00000107853.1 ENSMUSG00000107853 ENSMUST00000203098 Gm18584 processed_pseudogene Interval_84935 chr19 19194461 19194995 + 0 NA Intergenic Intergenic -81171 ENSMUSG00000088907.1 ENSMUSG00000088907 ENSMUST00000158282 Gm25437 snoRNA Interval_108216 chr3 122515257 122515817 + 0 NA intron (ENSMUSG00000028121.8, intron 2 of 3) protein_coding-intron (ENSMUSG00000028121.8, intron 7 of 11) 26144 ENSMUSG00000104773.1 ENSMUSG00000104773 ENSMUST00000196051 Mir7657 miRNA Interval_4581 chr1 75236069 75237236 + 0 NA promoter-TSS (ENSMUSG00000026203.16) protein_coding-promoter-TSS (ENSMUSG00000026203.16) -4550 ENSMUSG00000096094.2 ENSMUSG00000096094 ENSMUST00000191271 A630095N17Rik protein_coding Interval_70342 chr17 8661603 8661869 + 0 NA intron (ENSMUSG00000023868.17, intron 1 of 3) protein_coding-intron (ENSMUSG00000023868.17, intron 1 of 21) -92876 ENSMUSG00000084390.1 ENSMUSG00000084390 ENSMUST00000119013 Gm15425 processed_pseudogene Interval_168601 chr9 84038656 84038921 + 0 NA intron (ENSMUSG00000032263.14, intron 1 of 3) protein_coding-intron (ENSMUSG00000032263.14, intron 8 of 10) -13971 ENSMUSG00000111757.1 ENSMUSG00000111757 ENSMUST00000215223 Gm46124 antisense Interval_128142 chr5 111259746 111260511 + 0 NA intron (ENSMUSG00000033209.17, intron 12 of 22) protein_coding-intron (ENSMUSG00000033209.17, intron 13 of 23) 14966 ENSMUSG00000099130.1 ENSMUSG00000099130 ENSMUST00000183861 Gm27602 misc_RNA Interval_59694 chr15 58613790 58614395 + 0 NA intron (ENSMUSG00000037106.8, intron 22 of 40) protein_coding-intron (ENSMUSG00000037106.8, intron 22 of 40) 48478 ENSMUSG00000084485.1 ENSMUSG00000084485 ENSMUST00000122536 Gm23789 misc_RNA Interval_91909 chr2 51201615 51202207 + 0 NA Intergenic Intergenic -17471 ENSMUSG00000100496.1 ENSMUSG00000100496 ENSMUST00000191519 Gm28639 lincRNA Interval_171662 chr9 120010936 120011855 + 0 NA TTS (ENSMUSG00000111089.1) lincRNA-TTS (ENSMUSG00000111089.1) 1590 ENSMUSG00000111089.1 ENSMUSG00000111089 ENSMUST00000215481 Gm49427 lincRNA Interval_103353 chr3 40150895 40151397 + 0 NA Intergenic Intergenic 327569 ENSMUSG00000106948.1 ENSMUSG00000106948 ENSMUST00000202316 Gm42785 processed_pseudogene Interval_162757 chr9 8588486 8588752 + 0 NA intron (ENSMUSG00000031997.9, intron 1 of 2) protein_coding-intron (ENSMUSG00000031997.9, intron 1 of 12) 44423 ENSMUSG00000031997.9 ENSMUSG00000031997 ENSMUST00000214596 Trpc6 protein_coding Interval_126878 chr5 96460272 96460474 + 0 NA intron (ENSMUSG00000034687.8, intron 2 of 5) protein_coding-intron (ENSMUSG00000034687.8, intron 2 of 73) -2630 ENSMUSG00000106263.1 ENSMUSG00000106263 ENSMUST00000198132 Gm33050 antisense Interval_130499 chr5 128436932 128437307 + 0 NA Intergenic Intergenic -7297 ENSMUSG00000106275.1 ENSMUSG00000106275 ENSMUST00000200324 Gm42495 lincRNA Interval_150890 chr7 116196451 116199133 + 0 NA intron (ENSMUSG00000045659.18, intron 3 of 18) protein_coding-intron (ENSMUSG00000045659.18, intron 1 of 20) -68267 ENSMUSG00000045659.18 ENSMUSG00000045659 ENSMUST00000205446 Plekha7 protein_coding Interval_149291 chr7 96983520 96984736 + 0 NA intron (ENSMUSG00000018995.12, intron 5 of 5) protein_coding-intron (ENSMUSG00000018995.12, intron 5 of 13) -33988 ENSMUSG00000085560.2 ENSMUSG00000085560 ENSMUST00000137923 C230038L03Rik processed_transcript Interval_28841 chr11 78688702 78689473 + 0 NA intron (ENSMUSG00000017376.15, intron 1 of 2) protein_coding-intron (ENSMUSG00000017376.15, intron 1 of 10) 20674 ENSMUSG00000085115.1 ENSMUSG00000085115 ENSMUST00000145158 Gm11197 processed_pseudogene Interval_94683 chr2 93290869 93291370 + 0 NA TTS (ENSMUSG00000027217.13) protein_coding-TTS (ENSMUSG00000027217.13) 21396 ENSMUSG00000027217.13 ENSMUSG00000027217 ENSMUST00000152141 Tspan18 protein_coding Interval_161041 chr8 117107247 117107773 + 0 NA intron (ENSMUSG00000031845.15, intron 3 of 11) protein_coding-intron (ENSMUSG00000031845.15, intron 3 of 10) 11512 ENSMUSG00000031845.15 ENSMUSG00000031845 ENSMUST00000176860 Bco1 protein_coding Interval_139752 chr6 108390857 108391487 + 0 NA intron (ENSMUSG00000030102.11, intron 3 of 10) protein_coding-intron (ENSMUSG00000030102.11, intron 24 of 61) 3738 ENSMUSG00000030102.11 ENSMUSG00000030102 ENSMUST00000205005 Itpr1 protein_coding Interval_145057 chr7 29792675 29793692 + 0 NA exon (ENSMUSG00000047473.14, exon 5 of 5) protein_coding-exon (ENSMUSG00000047473.14, exon 5 of 5) 6613 ENSMUSG00000109565.1 ENSMUSG00000109565 ENSMUST00000208224 Gm6579 unprocessed_pseudogene Interval_164707 chr9 40720897 40721174 + 0 NA intron (ENSMUSG00000032024.10, intron 1 of 1) protein_coding-intron (ENSMUSG00000032024.10, intron 1 of 6) -1049 ENSMUSG00000086014.1 ENSMUSG00000086014 ENSMUST00000128235 Gm16095 antisense Interval_113097 chr4 48155929 48156318 + 0 NA intron (ENSMUSG00000061455.13, intron 3 of 3) protein_coding-intron (ENSMUSG00000061455.13, intron 4 of 8) 31200 ENSMUSG00000061455.13 ENSMUSG00000061455 ENSMUST00000064765 Stx17 protein_coding Interval_69172 chr16 91116224 91117304 + 0 NA Intergenic Intergenic -2165 ENSMUSG00000081176.1 ENSMUSG00000081176 ENSMUST00000119544 H3f3a-ps2 processed_pseudogene Interval_132600 chr5 146653108 146654127 + 0 NA Intergenic Intergenic -53005 ENSMUSG00000106020.1 ENSMUSG00000106020 ENSMUST00000197707 4930573C15Rik lincRNA Interval_106017 chr3 90652970 90653338 + 0 NA promoter-TSS (ENSMUSG00000063767.4) protein_coding-promoter-TSS (ENSMUSG00000063767.4) -863 ENSMUSG00000063767.4 ENSMUSG00000063767 ENSMUST00000079286 S100a7a protein_coding Interval_56542 chr14 120223764 120223998 + 0 NA Intergenic Intergenic -82252 ENSMUSG00000115146.1 ENSMUSG00000115146 ENSMUST00000226598 Gm4681 lincRNA Interval_2437 chr1 39345116 39345401 + 0 NA intron (ENSMUSG00000026077.15, intron 1 of 1) protein_coding-intron (ENSMUSG00000026077.15, intron 16 of 20) -22891 ENSMUSG00000073702.11 ENSMUSG00000073702 ENSMUST00000191855 Rpl31 protein_coding Interval_128413 chr5 113193814 113194009 + 0 NA intron (ENSMUSG00000051339.10, intron 1 of 12) protein_coding-intron (ENSMUSG00000051339.10, intron 1 of 12) -27677 ENSMUSG00000106206.1 ENSMUSG00000106206 ENSMUST00000196549 Gm43094 TEC Interval_27938 chr11 71010262 71011167 + 0 NA intron (ENSMUSG00000018442.13, intron 6 of 6) protein_coding-intron (ENSMUSG00000018442.13, intron 5 of 5) -8897 ENSMUSG00000040599.13 ENSMUSG00000040599 ENSMUST00000136137 Mis12 protein_coding Interval_105615 chr3 88138392 88138902 + 0 NA Intergenic Intergenic -29605 ENSMUSG00000001419.17 ENSMUSG00000001419 ENSMUST00000152861 Mef2d protein_coding Interval_10684 chr1 172712196 172712409 + 0 NA intron (ENSMUSG00000037942.5, intron 1 of 1) protein_coding-intron (ENSMUSG00000037942.5, intron 1 of 1) 14246 ENSMUSG00000037942.5 ENSMUSG00000037942 ENSMUST00000194251 Crp protein_coding Interval_108917 chr3 133339238 133340635 + 0 NA intron (ENSMUSG00000028013.16, intron 1 of 6) protein_coding-intron (ENSMUSG00000028013.16, intron 6 of 11) 18468 ENSMUSG00000028013.16 ENSMUSG00000028013 ENSMUST00000196807 Ppa2 protein_coding Interval_75250 chr17 65388676 65388991 + 0 NA intron (ENSMUSG00000045036.15, intron 10 of 12) protein_coding-intron (ENSMUSG00000045036.15, intron 13 of 15) 7457 ENSMUSG00000117012.1 ENSMUSG00000117012 ENSMUST00000232744 Gm18992 processed_pseudogene Interval_136144 chr6 51484519 51486194 + 0 NA Intergenic Intergenic 7898 ENSMUSG00000029836.15 ENSMUSG00000029836 ENSMUST00000203404 Cbx3 protein_coding Interval_69292 chr16 91960649 91960980 + 0 NA intron (ENSMUSG00000087190.2, intron 3 of 5) antisense-intron (ENSMUSG00000087190.2, intron 3 of 5) -16666 ENSMUSG00000099268.1 ENSMUSG00000099268 ENSMUST00000184087 Gm27773 miRNA Interval_66463 chr16 34015484 34015951 + 0 NA intron (ENSMUSG00000061751.16, intron 47 of 48) protein_coding-intron (ENSMUSG00000061751.16, intron 48 of 59) -8260 ENSMUSG00000116835.1 ENSMUSG00000116835 ENSMUST00000231993 Gm49594 processed_pseudogene Interval_99293 chr2 158728035 158728756 + 0 NA intron (ENSMUSG00000037754.13, intron 1 of 8) protein_coding-intron (ENSMUSG00000037754.13, intron 2 of 10) -11743 ENSMUSG00000093040.1 ENSMUSG00000093040 ENSMUST00000175299 Gm26141 miRNA Interval_89604 chr2 23189192 23189994 + 0 NA intron (ENSMUSG00000026775.9, intron 12 of 18) protein_coding-intron (ENSMUSG00000026775.9, intron 12 of 18) -12440 ENSMUSG00000081648.1 ENSMUSG00000081648 ENSMUST00000117205 Gm13423 processed_pseudogene Interval_165137 chr9 44753882 44754183 + 0 NA promoter-TSS (ENSMUSG00000111345.1) TEC-promoter-TSS (ENSMUSG00000111345.1) -181 ENSMUSG00000111345.1 ENSMUSG00000111345 ENSMUST00000217425 Gm48562 TEC Interval_4187 chr1 71506049 71506274 + 0 NA Intergenic Intergenic -12347 ENSMUSG00000101617.1 ENSMUSG00000101617 ENSMUST00000186254 Gm6947 processed_pseudogene Interval_21153 chr10 126945088 126946013 + 0 NA Intergenic Intergenic -12473 ENSMUSG00000112035.1 ENSMUSG00000112035 ENSMUST00000217769 Gm49335 lincRNA Interval_113528 chr4 55567459 55568573 + 0 NA intron (ENSMUSG00000066176.3, intron 1 of 1) lincRNA-intron (ENSMUSG00000066176.3, intron 1 of 1) 4751 ENSMUSG00000066176.3 ENSMUSG00000066176 ENSMUST00000135987 Gm12511 lincRNA Interval_81216 chr18 56551936 56552268 + 0 NA intron (ENSMUSG00000053644.13, intron 3 of 17) protein_coding-intron (ENSMUSG00000053644.13, intron 3 of 17) 10116 ENSMUSG00000053644.13 ENSMUSG00000053644 ENSMUST00000171844 Aldh7a1 protein_coding Interval_165338 chr9 46392942 46394063 + 0 NA Intergenic Intergenic -3860 ENSMUSG00000110802.1 ENSMUSG00000110802 ENSMUST00000213920 Gm47141 lincRNA Interval_44152 chr13 41266493 41266785 + 0 NA intron (ENSMUSG00000091264.3, intron 1 of 1) protein_coding-intron (ENSMUSG00000091264.3, intron 1 of 1) 7338 ENSMUSG00000090853.1 ENSMUSG00000090853 ENSMUST00000163881 Gm17364 protein_coding Interval_94710 chr2 93585946 93586178 + 0 NA Intergenic Intergenic -56326 ENSMUSG00000040310.12 ENSMUSG00000040310 ENSMUST00000111254 Alx4 protein_coding Interval_65591 chr16 23890292 23890923 + 0 NA exon (ENSMUSG00000004366.4, exon 1 of 2) protein_coding-exon (ENSMUSG00000004366.4, exon 1 of 2) 351 ENSMUSG00000004366.4 ENSMUSG00000004366 ENSMUST00000004480 Sst protein_coding Interval_69915 chr17 3172973 3173201 + 0 NA intron (ENSMUSG00000046201.9, intron 9 of 19) protein_coding-intron (ENSMUSG00000046201.9, intron 9 of 19) -42575 ENSMUSG00000116941.1 ENSMUSG00000116941 ENSMUST00000232579 Gm46578 processed_pseudogene Interval_69646 chr16 94816251 94816910 + 0 NA intron (ENSMUSG00000043301.16, intron 3 of 3) protein_coding-intron (ENSMUSG00000043301.16, intron 3 of 4) 40092 ENSMUSG00000043301.16 ENSMUSG00000043301 ENSMUST00000231744 Kcnj6 protein_coding Interval_160657 chr8 111366756 111367580 + 0 NA promoter-TSS (ENSMUSG00000033579.16) protein_coding-promoter-TSS (ENSMUSG00000033579.16) 26650 ENSMUSG00000033579.16 ENSMUSG00000033579 ENSMUST00000162463 Fa2h protein_coding Interval_166393 chr9 58870584 58870859 + 0 NA Intergenic Intergenic 47309 ENSMUSG00000032338.9 ENSMUSG00000032338 ENSMUST00000034889 Hcn4 protein_coding Interval_42652 chr13 17718455 17718863 + 0 NA exon (ENSMUSG00000041297.8, exon 14 of 14) protein_coding-exon (ENSMUSG00000041297.8, exon 14 of 14) -8795 ENSMUSG00000113045.1 ENSMUSG00000113045 ENSMUST00000220764 Gm48621 TEC Interval_60931 chr15 77955645 77958667 + 0 NA promoter-TSS (ENSMUSG00000016552.13) protein_coding-promoter-TSS (ENSMUSG00000016552.13) -4518 ENSMUSG00000097057.1 ENSMUSG00000097057 ENSMUST00000181255 Gm17638 antisense Interval_56758 chr14 121884321 121884624 + 0 NA intron (ENSMUSG00000041765.6, intron 1 of 5) protein_coding-intron (ENSMUSG00000041765.6, intron 1 of 8) -5968 ENSMUSG00000102112.1 ENSMUSG00000102112 ENSMUST00000185880 1810041H14Rik antisense Interval_58789 chr15 38075172 38075399 + 0 NA intron (ENSMUSG00000037487.7, intron 1 of 58) protein_coding-intron (ENSMUSG00000037487.7, intron 1 of 58) -3817 ENSMUSG00000115771.1 ENSMUSG00000115771 ENSMUST00000228698 Gm49312 bidirectional_promoter_lncRNA Interval_14197 chr10 28668165 28668758 + 0 NA promoter-TSS (ENSMUSG00000049109.15) protein_coding-promoter-TSS (ENSMUSG00000049109.15) -68964 ENSMUSG00000049109.15 ENSMUSG00000049109 ENSMUST00000219119 Themis protein_coding Interval_8454 chr1 139505284 139505598 + 0 NA intron (ENSMUSG00000026368.6, intron 2 of 11) protein_coding-intron (ENSMUSG00000026368.6, intron 2 of 11) -10953 ENSMUSG00000026368.6 ENSMUSG00000026368 ENSMUST00000141842 F13b protein_coding Interval_41115 chr12 111271625 111272796 + 0 NA intron (ENSMUSG00000021278.7, intron 3 of 11) protein_coding-intron (ENSMUSG00000021278.7, intron 3 of 11) -2304 ENSMUSG00000021278.7 ENSMUSG00000021278 ENSMUST00000220551 Amn protein_coding Interval_151178 chr7 119010964 119011550 + 0 NA Intergenic Intergenic -26613 ENSMUSG00000008734.9 ENSMUSG00000008734 ENSMUST00000207614 Gprc5b protein_coding Interval_28214 chr11 74406480 74407022 + 0 NA intron (ENSMUSG00000038807.19, intron 17 of 25) protein_coding-intron (ENSMUSG00000038807.19, intron 17 of 25) 44682 ENSMUSG00000058275.3 ENSMUSG00000058275 ENSMUST00000077794 Olfr412 protein_coding Interval_165631 chr9 50525473 50525764 + 0 NA exon (ENSMUSG00000032067.6, exon 2 of 4) protein_coding-exon (ENSMUSG00000032067.6, exon 2 of 4) 209 ENSMUSG00000032067.6 ENSMUSG00000032067 ENSMUST00000214907 Pts protein_coding Interval_40832 chr12 108738801 108739458 + 0 NA Intergenic Intergenic -1503 ENSMUSG00000114102.1 ENSMUSG00000114102 ENSMUST00000222878 Gm48048 processed_pseudogene Interval_81115 chr18 54110489 54110918 + 0 NA Intergenic Intergenic -79395 ENSMUSG00000117769.1 ENSMUSG00000117769 ENSMUST00000237377 Gm8594 processed_pseudogene Interval_163961 chr9 29848664 29848922 + 0 NA intron (ENSMUSG00000059974.10, intron 1 of 2) protein_coding-intron (ENSMUSG00000059974.10, intron 1 of 7) 214926 ENSMUSG00000111175.1 ENSMUSG00000111175 ENSMUST00000214849 Gm19640 processed_pseudogene Interval_51344 chr14 26565608 26567267 + 0 NA TTS (ENSMUSG00000107911.1) processed_pseudogene-TTS (ENSMUSG00000107911.1) 671 ENSMUSG00000107911.1 ENSMUSG00000107911 ENSMUST00000203611 Gm7565 processed_pseudogene Interval_108038 chr3 120878296 120879880 + 0 NA intron (ENSMUSG00000098097.7, intron 1 of 11) lincRNA-intron (ENSMUSG00000098097.7, intron 1 of 3) 7644 ENSMUSG00000098097.7 ENSMUSG00000098097 ENSMUST00000182099 6530403H02Rik lincRNA Interval_145346 chr7 34140523 34141923 + 0 NA TTS (ENSMUSG00000052997.15) protein_coding-TTS (ENSMUSG00000052997.15) -13186 ENSMUSG00000036459.15 ENSMUSG00000036459 ENSMUST00000140911 Wtip protein_coding Interval_56654 chr14 121189806 121190080 + 0 NA intron (ENSMUSG00000025555.14, intron 1 of 7) protein_coding-intron (ENSMUSG00000025555.14, intron 2 of 26) -58763 ENSMUSG00000085133.2 ENSMUSG00000085133 ENSMUST00000130256 B930095G15Rik sense_intronic Interval_115764 chr4 103465757 103466504 + 0 NA intron (ENSMUSG00000086136.1, intron 2 of 2) lincRNA-intron (ENSMUSG00000086136.1, intron 2 of 2) -5729 ENSMUSG00000094477.1 ENSMUSG00000094477 ENSMUST00000179866 Gm23064 miRNA Interval_41186 chr12 111686148 111686821 + 0 NA Intergenic Intergenic 8368 ENSMUSG00000060950.12 ENSMUSG00000060950 ENSMUST00000222737 Trmt61a protein_coding Interval_40661 chr12 106565276 106566002 + 0 NA intron (ENSMUSG00000091583.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000091583.1, intron 1 of 2) 6889 ENSMUSG00000091583.1 ENSMUSG00000091583 ENSMUST00000146663 Gm17033 lincRNA Interval_149307 chr7 97331578 97333007 + 0 NA promoter-TSS (ENSMUSG00000044952.5) protein_coding-promoter-TSS (ENSMUSG00000044952.5) -35 ENSMUSG00000044952.5 ENSMUSG00000044952 ENSMUST00000054107 Kctd21 protein_coding Interval_140936 chr6 122845468 122845777 + 0 NA TTS (ENSMUSG00000003154.15) protein_coding-TTS (ENSMUSG00000003154.15) 10539 ENSMUSG00000040552.8 ENSMUSG00000040552 ENSMUST00000042081 C3ar1 protein_coding Interval_4183 chr1 71429446 71430128 + 0 NA Intergenic Intergenic 64027 ENSMUSG00000101617.1 ENSMUSG00000101617 ENSMUST00000186254 Gm6947 processed_pseudogene Interval_117334 chr4 123047165 123047460 + 0 NA intron (ENSMUSG00000028653.16, intron 5 of 9) protein_coding-intron (ENSMUSG00000028653.16, intron 5 of 10) 30715 ENSMUSG00000028653.16 ENSMUSG00000028653 ENSMUST00000141855 Trit1 protein_coding Interval_68643 chr16 82935711 82935973 + 0 NA Intergenic Intergenic 107460 ENSMUSG00000094030.1 ENSMUSG00000094030 ENSMUST00000177665 Gm21833 protein_coding Interval_143099 chr6 149336230 149338430 + 0 NA Intergenic Intergenic 16496 ENSMUSG00000084083.1 ENSMUSG00000084083 ENSMUST00000121073 Gm15782 processed_pseudogene Interval_101583 chr3 7166420 7167424 + 0 NA Intergenic Intergenic 26288 ENSMUSG00000104274.1 ENSMUSG00000104274 ENSMUST00000193158 Gm8823 processed_pseudogene Interval_24720 chr11 36172175 36173562 + 0 NA intron (ENSMUSG00000049336.16, intron 7 of 28) protein_coding-intron (ENSMUSG00000049336.16, intron 7 of 28) 92204 ENSMUSG00000087245.1 ENSMUSG00000087245 ENSMUST00000147717 Gm12126 antisense Interval_87481 chr19 52840203 52841374 + 0 NA Intergenic Intergenic -82454 ENSMUSG00000117896.1 ENSMUSG00000117896 ENSMUST00000237126 AA387883 lincRNA Interval_60603 chr15 75625798 75626737 + 0 NA TTS (ENSMUSG00000047003.15) protein_coding-TTS (ENSMUSG00000047003.15) 9588 ENSMUSG00000047003.15 ENSMUSG00000047003 ENSMUST00000161555 Zfp41 protein_coding Interval_59532 chr15 55097173 55097776 + 0 NA intron (ENSMUSG00000115657.1, intron 2 of 2) antisense-intron (ENSMUSG00000115657.1, intron 2 of 2) -9717 ENSMUSG00000022422.13 ENSMUSG00000022422 ENSMUST00000143523 Dscc1 protein_coding Interval_52227 chr14 40879840 40880301 + 0 NA intron (ENSMUSG00000037833.14, intron 1 of 3) protein_coding-intron (ENSMUSG00000037833.14, intron 1 of 7) 13196 ENSMUSG00000037833.14 ENSMUSG00000037833 ENSMUST00000225854 Sh2d4b protein_coding Interval_122326 chr5 21330074 21331040 + 0 NA exon (ENSMUSG00000064280.14, exon 4 of 8) protein_coding-exon (ENSMUSG00000064280.14, exon 4 of 8) 562 ENSMUSG00000064280.14 ENSMUSG00000064280 ENSMUST00000132473 Ccdc146 protein_coding Interval_4749 chr1 78301926 78302574 + 0 NA Intergenic Intergenic -8095 ENSMUSG00000032908.9 ENSMUSG00000032908 ENSMUST00000036172 Sgpp2 protein_coding Interval_105781 chr3 89298318 89300191 + 0 NA Intergenic Intergenic -3224 ENSMUSG00000093093.2 ENSMUSG00000093093 ENSMUST00000175352 Gm22642 misc_RNA Interval_120967 chr4 151980852 151982189 + 0 NA TTS (ENSMUSG00000039768.16) protein_coding-TTS (ENSMUSG00000039768.16) 2536 ENSMUSG00000039768.16 ENSMUSG00000039768 ENSMUST00000124955 Dnajc11 protein_coding Interval_134165 chr6 22293820 22294203 + 0 NA TTS (ENSMUSG00000029671.15) protein_coding-TTS (ENSMUSG00000029671.15) 5150 ENSMUSG00000029671.15 ENSMUSG00000029671 ENSMUST00000176681 Wnt16 protein_coding Interval_109596 chr3 144947048 144948091 + 0 NA promoter-TSS (ENSMUSG00000085773.3) antisense-promoter-TSS (ENSMUSG00000085773.3) 8 ENSMUSG00000085773.3 ENSMUSG00000085773 ENSMUST00000136170 Gm16233 antisense Interval_54187 chr14 66056073 66056368 + 0 NA intron (ENSMUSG00000022039.6, intron 10 of 12) protein_coding-intron (ENSMUSG00000022039.6, intron 10 of 20) 11140 ENSMUSG00000068165.3 ENSMUSG00000068165 ENSMUST00000089275 Gm10233 processed_pseudogene Interval_60953 chr15 78153020 78153508 + 0 NA Intergenic Intergenic 13672 ENSMUSG00000016637.7 ENSMUSG00000016637 ENSMUST00000229417 Ift27 protein_coding Interval_7646 chr1 132781532 132782161 + 0 NA Intergenic Intergenic 32502 ENSMUSG00000088911.1 ENSMUSG00000088911 ENSMUST00000158286 Gm22609 snoRNA Interval_108049 chr3 121093186 121094297 + 0 NA Intergenic Intergenic -63959 ENSMUSG00000104749.1 ENSMUSG00000104749 ENSMUST00000200496 Gm42926 TEC Interval_127787 chr5 107838963 107840146 + 0 NA intron (ENSMUSG00000011831.16, intron 2 of 3) protein_coding-intron (ENSMUSG00000011831.16, intron 2 of 17) -4836 ENSMUSG00000083609.1 ENSMUSG00000083609 ENSMUST00000117837 Gm16007 processed_pseudogene Interval_72134 chr17 28223629 28224533 + 0 NA promoter-TSS (ENSMUSG00000117028.1) antisense-promoter-TSS (ENSMUSG00000117028.1) 86 ENSMUSG00000117028.1 ENSMUSG00000117028 ENSMUST00000232711 Gm49874 antisense Interval_11368 chr1 181272850 181273687 + 0 NA Intergenic Intergenic -8778 ENSMUSG00000103260.1 ENSMUSG00000103260 ENSMUST00000192106 Gm8146 processed_pseudogene Interval_55393 chr14 86509544 86509739 + 0 NA Intergenic Intergenic 2430 ENSMUSG00000115776.1 ENSMUSG00000115776 ENSMUST00000228733 Gm49158 processed_pseudogene Interval_125990 chr5 76641419 76641689 + 0 NA intron (ENSMUSG00000036403.15, intron 23 of 23) protein_coding-intron (ENSMUSG00000036403.15, intron 24 of 24) -16776 ENSMUSG00000036377.19 ENSMUSG00000036377 ENSMUST00000149216 C530008M17Rik protein_coding Interval_136231 chr6 52190370 52192471 + 0 NA exon (ENSMUSG00000000942.10, exon 1 of 2) protein_coding-exon (ENSMUSG00000000942.10, exon 1 of 2) 333 ENSMUSG00000000942.10 ENSMUSG00000000942 ENSMUST00000101395 Hoxa4 protein_coding Interval_39254 chr12 86213079 86214038 + 0 NA Intergenic Intergenic 44217 ENSMUSG00000097543.1 ENSMUSG00000097543 ENSMUST00000181667 Gm805 lincRNA Interval_10241 chr1 167448228 167449103 + 0 NA intron (ENSMUSG00000040485.5, intron 1 of 1) protein_coding-intron (ENSMUSG00000040485.5, intron 1 of 1) 18115 ENSMUSG00000040485.5 ENSMUSG00000040485 ENSMUST00000036643 Lrrc52 protein_coding Interval_94438 chr2 91221956 91222332 + 0 NA intron (ENSMUSG00000002109.14, intron 3 of 8) protein_coding-intron (ENSMUSG00000002109.14, intron 3 of 9) 13187 ENSMUSG00000002109.14 ENSMUSG00000002109 ENSMUST00000028696 Ddb2 protein_coding Interval_84923 chr19 18815195 18815492 + 0 NA exon (ENSMUSG00000024727.9, exon 17 of 39) protein_coding-exon (ENSMUSG00000024727.9, exon 17 of 39) -38382 ENSMUSG00000088601.1 ENSMUSG00000088601 ENSMUST00000157976 Gm24190 misc_RNA Interval_94395 chr2 90722380 90722676 + 0 NA intron (ENSMUSG00000051329.13, intron 30 of 36) protein_coding-intron (ENSMUSG00000051329.13, intron 30 of 36) -22842 ENSMUSG00000008200.15 ENSMUSG00000008200 ENSMUST00000123955 Fnbp4 protein_coding Interval_45686 chr13 56914558 56915714 + 0 NA Intergenic Intergenic 15812 ENSMUSG00000077279.1 ENSMUSG00000077279 ENSMUST00000104091 Gm22777 snoRNA Interval_14179 chr10 28380230 28381536 + 0 NA intron (ENSMUSG00000019889.10, intron 6 of 14) protein_coding-intron (ENSMUSG00000019889.10, intron 6 of 31) -166762 ENSMUSG00000076377.1 ENSMUSG00000076377 ENSMUST00000102422 Gm22370 miRNA Interval_105056 chr3 80550569 80551377 + 0 NA Intergenic Intergenic 141340 ENSMUSG00000093226.1 ENSMUSG00000093226 ENSMUST00000175485 Gm25749 miRNA Interval_102736 chr3 30684627 30685365 + 0 NA exon (ENSMUSG00000074653.10, exon 7 of 7) protein_coding-exon (ENSMUSG00000074653.10, exon 7 of 7) -1089 ENSMUSG00000086189.1 ENSMUSG00000086189 ENSMUST00000133653 Gm15462 antisense Interval_21490 chr10 128890764 128892366 + 0 NA exon (ENSMUSG00000025352.6, exon 1 of 3) protein_coding-exon (ENSMUSG00000025352.6, exon 1 of 3) 153 ENSMUSG00000025352.6 ENSMUSG00000025352 ENSMUST00000026408 Gdf11 protein_coding Interval_6420 chr1 107688307 107688507 + 0 NA intron (ENSMUSG00000086161.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000086161.1, intron 1 of 2) 1399 ENSMUSG00000086161.1 ENSMUSG00000086161 ENSMUST00000153774 Gm15389 lincRNA Interval_37963 chr12 73395621 73395794 + 0 NA intron (ENSMUSG00000056359.6, intron 2 of 3) lincRNA-intron (ENSMUSG00000056359.6, intron 2 of 3) 13850 ENSMUSG00000056359.6 ENSMUSG00000056359 ENSMUST00000221180 D830013O20Rik lincRNA Interval_169894 chr9 102783240 102784926 + 0 NA intron (ENSMUSG00000110884.1, intron 2 of 4) lincRNA-intron (ENSMUSG00000110884.1, intron 2 of 4) 12588 ENSMUSG00000110884.1 ENSMUSG00000110884 ENSMUST00000217446 Gm47416 lincRNA Interval_2458 chr1 39505581 39506000 + 0 NA Intergenic Intergenic -13743 ENSMUSG00000104827.1 ENSMUSG00000104827 ENSMUST00000197298 Gm24826 snoRNA Interval_118643 chr4 132949981 132950978 + 0 NA Intergenic Intergenic -19162 ENSMUSG00000087911.1 ENSMUSG00000087911 ENSMUST00000157286 Gm24913 snRNA Interval_117802 chr4 126300858 126302238 + 0 NA intron (ENSMUSG00000056174.8, intron 1 of 1) protein_coding-intron (ENSMUSG00000056174.8, intron 2 of 3) 1018 ENSMUSG00000056174.8 ENSMUSG00000056174 ENSMUST00000128435 Col8a2 protein_coding Interval_141611 chr6 131312715 131313006 + 0 NA intron (ENSMUSG00000032899.14, intron 2 of 3) protein_coding-intron (ENSMUSG00000032899.14, intron 1 of 8) -20522 ENSMUSG00000107658.1 ENSMUSG00000107658 ENSMUST00000203734 Gm44958 processed_pseudogene Interval_17755 chr10 79916444 79917438 + 0 NA promoter-TSS (ENSMUSG00000035773.6) protein_coding-promoter-TSS (ENSMUSG00000035773.6) -30 ENSMUSG00000035773.6 ENSMUSG00000035773 ENSMUST00000219745 Kiss1r protein_coding Interval_2295 chr1 37864514 37865551 + 0 NA promoter-TSS (ENSMUSG00000060771.15) protein_coding-promoter-TSS (ENSMUSG00000060771.15) -196 ENSMUSG00000060771.15 ENSMUSG00000060771 ENSMUST00000134024 Tsga10 protein_coding Interval_88412 chr2 4918613 4919700 + 0 NA promoter-TSS (ENSMUSG00000026664.7) protein_coding-promoter-TSS (ENSMUSG00000026664.7) 76 ENSMUSG00000026664.7 ENSMUSG00000026664 ENSMUST00000128738 Phyh protein_coding Interval_149614 chr7 100041801 100042624 + 0 NA Intergenic Intergenic 36040 ENSMUSG00000030732.13 ENSMUSG00000030732 ENSMUST00000144808 Chrdl2 protein_coding Interval_167356 chr9 67766670 67767797 + 0 NA Intergenic Intergenic -7025 ENSMUSG00000055125.7 ENSMUSG00000055125 ENSMUST00000186205 M5C1000I18Rik lincRNA Interval_162724 chr9 8015520 8016596 + 0 NA Intergenic Intergenic 11228 ENSMUSG00000110161.1 ENSMUSG00000110161 ENSMUST00000211167 Gm45494 bidirectional_promoter_lncRNA Interval_41811 chr12 119797620 119797848 + 0 NA Intergenic Intergenic 78908 ENSMUSG00000114137.1 ENSMUSG00000114137 ENSMUST00000222158 Gm48685 unprocessed_pseudogene Interval_27143 chr11 63276810 63277466 + 0 NA Intergenic Intergenic -35663 ENSMUSG00000083052.1 ENSMUSG00000083052 ENSMUST00000117347 Gm12285 processed_pseudogene Interval_46308 chr13 63658298 63658546 + 0 NA Intergenic Intergenic -3375 ENSMUSG00000113700.1 ENSMUSG00000113700 ENSMUST00000221930 Gm47387 processed_pseudogene Interval_53395 chr14 56895010 56895554 + 0 NA intron (ENSMUSG00000021945.9, intron 2 of 2) protein_coding-intron (ENSMUSG00000021945.9, intron 1 of 23) 29869 ENSMUSG00000114500.1 ENSMUSG00000114500 ENSMUST00000224747 Gm8983 processed_pseudogene Interval_65198 chr16 20472141 20472500 + 0 NA Intergenic Intergenic -16468 ENSMUSG00000093381.1 ENSMUSG00000093381 ENSMUST00000177503 Gm20615 unprocessed_pseudogene Interval_125930 chr5 75896051 75897297 + 0 NA Intergenic Intergenic -13153 ENSMUSG00000088783.1 ENSMUSG00000088783 ENSMUST00000158158 Gm25374 miRNA Interval_104872 chr3 77007378 77008638 + 0 NA Intergenic Intergenic 97277 ENSMUSG00000088481.1 ENSMUSG00000088481 ENSMUST00000157856 Gm23644 snoRNA Interval_162052 chr8 124746432 124746640 + 0 NA intron (ENSMUSG00000043068.6, intron 1 of 1) protein_coding-intron (ENSMUSG00000043068.6, intron 1 of 1) 5296 ENSMUSG00000043068.6 ENSMUSG00000043068 ENSMUST00000055257 Fam89a protein_coding Interval_130826 chr5 131019492 131019813 + 0 NA intron (ENSMUSG00000034040.16, intron 5 of 5) protein_coding-intron (ENSMUSG00000034040.16, intron 5 of 10) 23318 ENSMUSG00000106729.1 ENSMUSG00000106729 ENSMUST00000200842 Gm43165 TEC Interval_105965 chr3 90342573 90343255 + 0 NA exon (ENSMUSG00000042390.9, exon 1 of 1) protein_coding-exon (ENSMUSG00000042390.9, exon 1 of 1) 7519 ENSMUSG00000108689.1 ENSMUSG00000108689 ENSMUST00000199820 Gm45354 TEC Interval_44212 chr13 42183416 42184609 + 0 NA promoter-TSS (ENSMUSG00000021366.8) protein_coding-promoter-TSS (ENSMUSG00000021366.8) 19690 ENSMUSG00000021366.8 ENSMUSG00000021366 ENSMUST00000220801 Hivep1 protein_coding Interval_169853 chr9 102505738 102506728 + 0 NA exon (ENSMUSG00000035606.8, exon 1 of 11) protein_coding-exon (ENSMUSG00000035606.8, exon 1 of 11) -15103 ENSMUSG00000035606.8 ENSMUSG00000035606 ENSMUST00000190609 Ky protein_coding Interval_118205 chr4 129526645 129527044 + 0 NA intron (ENSMUSG00000028800.15, intron 1 of 2) protein_coding-intron (ENSMUSG00000028800.15, intron 3 of 13) -2260 ENSMUSG00000028800.15 ENSMUSG00000028800 ENSMUST00000139305 Hdac1 protein_coding Interval_14974 chr10 41606645 41608391 + 0 NA intron (ENSMUSG00000075225.15, intron 27 of 47) protein_coding-intron (ENSMUSG00000075225.15, intron 1 of 12) 3801 ENSMUSG00000075225.15 ENSMUSG00000075225 ENSMUST00000190522 Ccdc162 protein_coding Interval_45146 chr13 52669765 52670168 + 0 NA Intergenic Intergenic 86463 ENSMUSG00000021457.14 ENSMUSG00000021457 ENSMUST00000140339 Syk protein_coding Interval_90816 chr2 32771774 32772069 + 0 NA TTS (ENSMUSG00000039021.15) protein_coding-TTS (ENSMUSG00000039021.15) 3710 ENSMUSG00000039021.15 ENSMUSG00000039021 ENSMUST00000161958 Ttc16 protein_coding Interval_95868 chr2 117450429 117451072 + 0 NA Intergenic Intergenic -33053 ENSMUSG00000085681.1 ENSMUSG00000085681 ENSMUST00000138372 Gm13982 lincRNA Interval_70370 chr17 9167022 9169284 + 0 NA promoter-TSS (ENSMUSG00000097049.1) lincRNA-promoter-TSS (ENSMUSG00000097049.1) -317 ENSMUSG00000097049.1 ENSMUSG00000097049 ENSMUST00000181618 6530411M01Rik lincRNA Interval_70195 chr17 6093443 6093674 + 0 NA Intergenic Intergenic -13300 ENSMUSG00000034377.10 ENSMUSG00000034377 ENSMUST00000137063 Tulp4 protein_coding Interval_126526 chr5 89596227 89596442 + 0 NA Intergenic Intergenic 68905 ENSMUSG00000035528.4 ENSMUSG00000035528 ENSMUST00000048557 Npffr2 protein_coding Interval_69279 chr16 91852626 91853846 + 0 NA promoter-TSS (ENSMUSG00000022957.20) protein_coding-promoter-TSS (ENSMUSG00000022957.20) -50827 ENSMUSG00000022957.20 ENSMUSG00000022957 ENSMUST00000137575 Itsn1 protein_coding Interval_65409 chr16 22189300 22190569 + 0 NA Intergenic Intergenic -34310 ENSMUSG00000064686.1 ENSMUSG00000064686 ENSMUST00000082752 Gm25810 snRNA Interval_145872 chr7 40901301 40901617 + 0 NA promoter-TSS (ENSMUSG00000100600.6) antisense-promoter-TSS (ENSMUSG00000100600.6) 2127 ENSMUSG00000039257.11 ENSMUSG00000039257 ENSMUST00000186352 Vstm2b protein_coding Interval_50101 chr14 7994353 7994621 + 0 NA promoter-TSS (ENSMUSG00000025279.7) protein_coding-promoter-TSS (ENSMUSG00000025279.7) -8432 ENSMUSG00000025277.14 ENSMUSG00000025277 ENSMUST00000026313 Abhd6 protein_coding Interval_35757 chr12 28950364 28950710 + 0 NA intron (ENSMUSG00000113387.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000113387.1, intron 1 of 2) 40308 ENSMUSG00000113387.1 ENSMUSG00000113387 ENSMUST00000221643 Gm31508 lincRNA Interval_38649 chr12 80801409 80801642 + 0 NA intron (ENSMUSG00000021133.9, intron 1 of 6) protein_coding-intron (ENSMUSG00000021133.9, intron 1 of 5) 11015 ENSMUSG00000021133.9 ENSMUSG00000021133 ENSMUST00000219720 Susd6 protein_coding Interval_142433 chr6 142193499 142193727 + 0 NA intron (ENSMUSG00000118597.1, intron 1 of 2) protein_coding-intron (ENSMUSG00000079262.3, intron 1 of 2) 14908 ENSMUSG00000079262.3 ENSMUSG00000079262 ENSMUST00000174455 Slco1a6 protein_coding Interval_20147 chr10 115260963 115261639 + 0 NA Intergenic Intergenic -3372 ENSMUSG00000087853.1 ENSMUSG00000087853 ENSMUST00000157228 Gm22794 misc_RNA Interval_155045 chr8 25927672 25928853 + 0 NA intron (ENSMUSG00000031576.16, intron 5 of 7) protein_coding-intron (ENSMUSG00000031576.16, intron 24 of 26) 45791 ENSMUSG00000037260.8 ENSMUSG00000037260 ENSMUST00000209420 Hgsnat protein_coding Interval_15240 chr10 43619108 43619419 + 0 NA intron (ENSMUSG00000075184.3, intron 3 of 4) lincRNA-intron (ENSMUSG00000075184.3, intron 2 of 2) -19960 ENSMUSG00000111300.1 ENSMUSG00000111300 ENSMUST00000213139 Rpl26-ps1 processed_pseudogene Interval_77298 chr17 87882670 87883025 + 0 NA Intergenic Intergenic -38130 ENSMUSG00000093922.1 ENSMUSG00000093922 ENSMUST00000179601 Rpl36-ps4 protein_coding Interval_73139 chr17 35046056 35047053 + 0 NA promoter-TSS (ENSMUSG00000007035.15) protein_coding-promoter-TSS (ENSMUSG00000007035.15) -438 ENSMUSG00000007035.15 ENSMUSG00000007035 ENSMUST00000172491 Msh5 protein_coding Interval_160265 chr8 107557776 107558745 + 0 NA exon (ENSMUSG00000031930.11, exon 24 of 24) protein_coding-exon (ENSMUSG00000031930.11, exon 24 of 24) 7016 ENSMUSG00000065439.1 ENSMUSG00000065439 ENSMUST00000083505 Mir140 miRNA Interval_44775 chr13 48533580 48534875 + 0 NA exon (ENSMUSG00000097375.3, exon 2 of 2) lincRNA-exon (ENSMUSG00000097375.3, exon 2 of 2) 1887 ENSMUSG00000065453.1 ENSMUSG00000065453 ENSMUST00000083519 Mirlet7d miRNA Interval_62552 chr15 94581955 94582616 + 0 NA promoter-TSS (ENSMUSG00000022451.12) protein_coding-promoter-TSS (ENSMUSG00000022451.12) 3190 ENSMUSG00000022451.12 ENSMUSG00000022451 ENSMUST00000152590 Twf1 protein_coding Interval_62378 chr15 91338303 91338589 + 0 NA intron (ENSMUSG00000036298.10, intron 6 of 9) protein_coding-intron (ENSMUSG00000036298.10, intron 6 of 9) 73771 ENSMUSG00000036298.10 ENSMUSG00000036298 ENSMUST00000109282 Slc2a13 protein_coding Interval_167321 chr9 67346583 67347807 + 0 NA intron (ENSMUSG00000052698.15, intron 20 of 58) protein_coding-intron (ENSMUSG00000052698.15, intron 19 of 57) -16548 ENSMUSG00000052698.15 ENSMUSG00000052698 ENSMUST00000213584 Tln2 protein_coding Interval_132147 chr5 142956853 142957354 + 0 NA Intergenic Intergenic -3273 ENSMUSG00000029581.14 ENSMUSG00000029581 ENSMUST00000135293 Fscn1 protein_coding Interval_147206 chr7 64501313 64502932 + 0 NA promoter-TSS (ENSMUSG00000030519.14) protein_coding-promoter-TSS (ENSMUSG00000030519.14) -13189 ENSMUSG00000108384.1 ENSMUSG00000108384 ENSMUST00000206082 Gm45082 TEC Interval_16599 chr10 64784961 64786589 + 0 NA intron (ENSMUSG00000060843.11, intron 13 of 17) protein_coding-intron (ENSMUSG00000060843.11, intron 12 of 16) 334592 ENSMUSG00000100528.1 ENSMUSG00000100528 ENSMUST00000187710 Gm28881 lincRNA Interval_132562 chr5 146338235 146338535 + 0 NA Intergenic Intergenic 52209 ENSMUSG00000029635.15 ENSMUSG00000029635 ENSMUST00000160924 Cdk8 protein_coding Interval_148615 chr7 83343156 83343527 + 0 NA intron (ENSMUSG00000109506.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000109506.1, intron 1 of 1) 26088 ENSMUSG00000109506.1 ENSMUSG00000109506 ENSMUST00000208430 Gm44724 lincRNA Interval_81895 chr18 65670012 65671132 + 0 NA intron (ENSMUSG00000042439.13, intron 4 of 6) protein_coding-intron (ENSMUSG00000042439.13, intron 3 of 5) -27712 ENSMUSG00000046610.15 ENSMUSG00000046610 ENSMUST00000134343 Oacyl protein_coding Interval_132545 chr5 146205188 146205544 + 0 NA promoter-TSS (ENSMUSG00000105636.1) lincRNA-promoter-TSS (ENSMUSG00000105636.1) -577 ENSMUSG00000105636.1 ENSMUSG00000105636 ENSMUST00000199177 Gm43625 lincRNA Interval_60204 chr15 67961978 67962174 + 0 NA Intergenic Intergenic -19272 ENSMUSG00000116519.1 ENSMUSG00000116519 ENSMUST00000230045 Gm49409 processed_pseudogene Interval_67123 chr16 43609390 43610686 + 0 NA TTS (ENSMUSG00000022708.16) protein_coding-TTS (ENSMUSG00000022708.16) -30617 ENSMUSG00000076372.2 ENSMUSG00000076372 ENSMUST00000102417 Mir568 miRNA Interval_147371 chr7 66233490 66233705 + 0 NA intron (ENSMUSG00000015133.17, intron 2 of 2) protein_coding-intron (ENSMUSG00000015133.17, intron 2 of 2) 28873 ENSMUSG00000015133.17 ENSMUSG00000015133 ENSMUST00000154893 Lrrk1 protein_coding Interval_167341 chr9 67583093 67583374 + 0 NA Intergenic Intergenic -116948 ENSMUSG00000111819.1 ENSMUSG00000111819 ENSMUST00000216655 Gm47110 processed_pseudogene Interval_38996 chr12 84364338 84364785 + 0 NA intron (ENSMUSG00000021235.13, intron 1 of 1) protein_coding-intron (ENSMUSG00000021235.13, intron 1 of 11) -2769 ENSMUSG00000021234.9 ENSMUSG00000021234 ENSMUST00000126752 Fam161b protein_coding Interval_38450 chr12 79100103 79101135 + 0 NA intron (ENSMUSG00000112489.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000112489.1, intron 2 of 4) 3320 ENSMUSG00000112489.1 ENSMUSG00000112489 ENSMUST00000219976 9230116L04Rik lincRNA Interval_76821 chr17 84299136 84299695 + 0 NA intron (ENSMUSG00000024251.10, intron 14 of 14) protein_coding-intron (ENSMUSG00000024251.10, intron 29 of 37) -11668 ENSMUSG00000065732.1 ENSMUSG00000065732 ENSMUST00000083798 Gm24492 snRNA Interval_113015 chr4 46876643 46877172 + 0 NA intron (ENSMUSG00000039809.10, intron 1 of 18) protein_coding-intron (ENSMUSG00000039809.10, intron 1 of 18) -17005 ENSMUSG00000039809.10 ENSMUSG00000039809 ENSMUST00000206773 Gabbr2 protein_coding Interval_48350 chr13 98430054 98431183 + 0 NA intron (ENSMUSG00000099446.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000099446.1, intron 1 of 2) 4447 ENSMUSG00000099446.1 ENSMUSG00000099446 ENSMUST00000186644 2310005E17Rik lincRNA Interval_136388 chr6 54032407 54032648 + 0 NA Intergenic Intergenic 53798 ENSMUSG00000108060.2 ENSMUSG00000108060 ENSMUST00000203047 4921529L05Rik processed_transcript Interval_93119 chr2 70359605 70360243 + 0 NA intron (ENSMUSG00000042064.13, intron 31 of 33) protein_coding-intron (ENSMUSG00000042064.13, intron 32 of 34) -99058 ENSMUSG00000047965.9 ENSMUSG00000047965 ENSMUST00000140507 Rpl9-ps7 processed_pseudogene Interval_12482 chr1 194026558 194027531 + 0 NA Intergenic Intergenic 160035 ENSMUSG00000104182.1 ENSMUSG00000104182 ENSMUST00000194272 Gm21362 processed_pseudogene Interval_174372 chrX 150529594 150530519 + 0 NA intron (ENSMUSG00000025269.16, intron 5 of 6) protein_coding-intron (ENSMUSG00000025269.16, intron 6 of 6) 17389 ENSMUSG00000099172.1 ENSMUSG00000099172 ENSMUST00000184710 Mir3620 miRNA Interval_110095 chr3 153255406 153256128 + 0 NA intron (ENSMUSG00000052544.9, intron 3 of 4) protein_coding-intron (ENSMUSG00000052544.9, intron 2 of 2) 42882 ENSMUSG00000105023.1 ENSMUSG00000105023 ENSMUST00000197231 1700012D16Rik sense_intronic Interval_86068 chr19 36217759 36217974 + 0 NA exon (ENSMUSG00000117990.1, exon 3 of 3) processed_transcript-exon (ENSMUSG00000117990.1, exon 3 of 3) -33861 ENSMUSG00000118032.1 ENSMUSG00000118032 ENSMUST00000236788 Gm50147 lincRNA Interval_76113 chr17 75089453 75090062 + 0 NA intron (ENSMUSG00000001870.16, intron 3 of 34) protein_coding-intron (ENSMUSG00000001870.16, intron 3 of 33) -75450 ENSMUSG00000084025.1 ENSMUSG00000084025 ENSMUST00000120159 Gm6276 processed_pseudogene Interval_164451 chr9 37117063 37118576 + 0 NA promoter-TSS (ENSMUSG00000110722.1) antisense-promoter-TSS (ENSMUSG00000110722.1) -837 ENSMUSG00000110722.1 ENSMUSG00000110722 ENSMUST00000215174 Gm48716 antisense Interval_158690 chr8 85293611 85293840 + 0 NA intron (ENSMUSG00000031696.9, intron 2 of 2) protein_coding-intron (ENSMUSG00000031696.9, intron 2 of 16) 5741 ENSMUSG00000031696.9 ENSMUSG00000031696 ENSMUST00000211154 Vps35 protein_coding Interval_39683 chr12 92172310 92172593 + 0 NA Intergenic Intergenic -11012 ENSMUSG00000113643.1 ENSMUSG00000113643 ENSMUST00000222953 Gm40598 processed_pseudogene Interval_102772 chr3 30927704 30927925 + 0 NA intron (ENSMUSG00000037652.15, intron 9 of 13) protein_coding-intron (ENSMUSG00000037652.15, intron 11 of 16) 29824 ENSMUSG00000102369.1 ENSMUSG00000102369 ENSMUST00000194340 9530022L04Rik TEC Interval_19627 chr10 106054427 106054609 + 0 NA Intergenic Intergenic 1561 ENSMUSG00000088084.1 ENSMUSG00000088084 ENSMUST00000157459 Gm25342 snoRNA Interval_28372 chr11 75443595 75444062 + 0 NA intron (ENSMUSG00000045374.18, intron 8 of 8) protein_coding-intron (ENSMUSG00000045374.18, intron 9 of 9) -4250 ENSMUSG00000038224.12 ENSMUSG00000038224 ENSMUST00000142094 Serpinf2 protein_coding Interval_55323 chr14 82798365 82798739 + 0 NA Intergenic Intergenic 28161 ENSMUSG00000115051.1 ENSMUSG00000115051 ENSMUST00000227503 Gm49049 processed_pseudogene Interval_83859 chr19 5139482 5140451 + 0 NA intron (ENSMUSG00000024855.10, intron 20 of 22) protein_coding-intron (ENSMUSG00000024855.10, intron 19 of 23) 3533 ENSMUSG00000024855.10 ENSMUSG00000024855 ENSMUST00000236470 Pacs1 protein_coding Interval_9188 chr1 154886828 154887038 + 0 NA Intergenic Intergenic -69992 ENSMUSG00000004110.17 ENSMUSG00000004110 ENSMUST00000186256 Cacna1e protein_coding Interval_14622 chr10 37136134 37139228 + 0 NA intron (ENSMUSG00000069662.5, intron 1 of 1) protein_coding-intron (ENSMUSG00000069662.5, intron 1 of 1) 1239 ENSMUSG00000069662.5 ENSMUSG00000069662 ENSMUST00000092584 Marcks protein_coding Interval_86573 chr19 41791352 41792309 + 0 NA exon (ENSMUSG00000025154.15, exon 2 of 12) protein_coding-exon (ENSMUSG00000025154.15, exon 2 of 12) 10217 ENSMUSG00000025154.15 ENSMUSG00000025154 ENSMUST00000177495 Arhgap19 protein_coding Interval_128441 chr5 113332415 113333177 + 0 NA Intergenic Intergenic 4849 ENSMUSG00000104840.1 ENSMUSG00000104840 ENSMUST00000195977 Mir7230 miRNA Interval_7296 chr1 128535118 128536213 + 0 NA Intergenic Intergenic -14205 ENSMUSG00000100078.1 ENSMUSG00000100078 ENSMUST00000187672 Gm6170 processed_pseudogene Interval_141049 chr6 124673941 124674600 + 0 NA intron (ENSMUSG00000004270.13, intron 1 of 2) protein_coding-intron (ENSMUSG00000004270.13, intron 1 of 12) -27987 ENSMUSG00000004270.13 ENSMUSG00000004270 ENSMUST00000150597 Lpcat3 protein_coding Interval_6555 chr1 116363340 116363995 + 0 NA intron (ENSMUSG00000070695.4, intron 13 of 23) protein_coding-intron (ENSMUSG00000070695.4, intron 13 of 23) 30746 ENSMUSG00000092948.1 ENSMUSG00000092948 ENSMUST00000175207 Gm23393 miRNA Interval_74724 chr17 56162007 56162899 + 0 NA promoter-TSS (ENSMUSG00000044469.8) protein_coding-promoter-TSS (ENSMUSG00000044469.8) -24 ENSMUSG00000044469.8 ENSMUSG00000044469 ENSMUST00000077788 Tnfaip8l1 protein_coding Interval_52496 chr14 47010893 47011577 + 0 NA intron (ENSMUSG00000021838.17, intron 1 of 11) protein_coding-intron (ENSMUSG00000021838.17, intron 2 of 12) 49795 ENSMUSG00000089870.1 ENSMUSG00000089870 ENSMUST00000161397 Gm15562 sense_intronic Interval_152520 chr7 133782406 133783709 + 0 NA promoter-TSS (ENSMUSG00000030986.13) protein_coding-promoter-TSS (ENSMUSG00000030986.13) -6428 ENSMUSG00000053111.13 ENSMUSG00000053111 ENSMUST00000211077 Fank1 protein_coding Interval_23984 chr11 29184931 29185265 + 0 NA intron (ENSMUSG00000020463.15, intron 3 of 3) protein_coding-intron (ENSMUSG00000020463.15, intron 3 of 15) 11351 ENSMUSG00000020463.15 ENSMUSG00000020463 ENSMUST00000148759 Ppp4r3b protein_coding Interval_113294 chr4 53217412 53218430 + 0 NA promoter-TSS (ENSMUSG00000087192.7) processed_transcript-promoter-TSS (ENSMUSG00000087192.7) -360 ENSMUSG00000087192.7 ENSMUSG00000087192 ENSMUST00000139222 4930412L05Rik processed_transcript Interval_40882 chr12 109060642 109061157 + 0 NA intron (ENSMUSG00000040867.13, intron 1 of 6) protein_coding-intron (ENSMUSG00000040867.13, intron 1 of 6) -7124 ENSMUSG00000040867.13 ENSMUSG00000040867 ENSMUST00000185745 Begain protein_coding Interval_110537 chr4 3714084 3714304 + 0 NA intron (ENSMUSG00000042228.14, intron 1 of 1) protein_coding-intron (ENSMUSG00000042228.14, intron 1 of 12) 6832 ENSMUSG00000083186.1 ENSMUSG00000083186 ENSMUST00000121238 Gm11805 processed_pseudogene Interval_127849 chr5 108209252 108209767 + 0 NA intron (ENSMUSG00000056531.11, intron 24 of 28) protein_coding-intron (ENSMUSG00000056531.11, intron 24 of 28) 1925 ENSMUSG00000105591.1 ENSMUSG00000105591 ENSMUST00000199594 Gm43083 processed_pseudogene Interval_22256 chr11 8268985 8269652 + 0 NA Intergenic Intergenic 114535 ENSMUSG00000083553.1 ENSMUSG00000083553 ENSMUST00000117240 Gm11989 processed_pseudogene Interval_97378 chr2 135606296 135606494 + 0 NA Intergenic Intergenic -22811 ENSMUSG00000085631.1 ENSMUSG00000085631 ENSMUST00000129868 9630028H03Rik antisense Interval_140059 chr6 113704073 113704469 + 0 NA promoter-TSS (ENSMUSG00000056952.13) protein_coding-promoter-TSS (ENSMUSG00000056952.13) -2937 ENSMUSG00000106581.1 ENSMUSG00000106581 ENSMUST00000200187 Mir7042 miRNA Interval_112950 chr4 46367384 46367930 + 0 NA Intergenic Intergenic 21761 ENSMUSG00000028331.12 ENSMUSG00000028331 ENSMUST00000030015 Trmo protein_coding Interval_124057 chr5 37900596 37902293 + 0 NA Intergenic Intergenic 7094 ENSMUSG00000106718.1 ENSMUSG00000106718 ENSMUST00000201327 Gm20052 lincRNA Interval_75209 chr17 64730343 64730721 + 0 NA intron (ENSMUSG00000024085.13, intron 2 of 6) protein_coding-intron (ENSMUSG00000024085.13, intron 16 of 21) 16913 ENSMUSG00000024085.13 ENSMUSG00000024085 ENSMUST00000169668 Man2a1 protein_coding Interval_108087 chr3 121441827 121442916 + 0 NA intron (ENSMUSG00000053931.11, intron 1 of 2) protein_coding-intron (ENSMUSG00000053931.11, intron 1 of 6) 14325 ENSMUSG00000106022.1 ENSMUSG00000106022 ENSMUST00000198374 Gm42929 TEC Interval_116817 chr4 117426841 117427029 + 0 NA intron (ENSMUSG00000028677.19, intron 2 of 2) protein_coding-intron (ENSMUSG00000028677.19, intron 2 of 14) -19015 ENSMUSG00000086876.1 ENSMUSG00000086876 ENSMUST00000136115 Gm12828 antisense Interval_105569 chr3 87809246 87810433 + 0 NA intron (ENSMUSG00000005640.11, intron 10 of 22) protein_coding-intron (ENSMUSG00000005640.11, intron 10 of 21) 7896 ENSMUSG00000005640.11 ENSMUSG00000005640 ENSMUST00000166866 Insrr protein_coding Interval_100528 chr2 169934927 169935578 + 0 NA intron (ENSMUSG00000047907.11, intron 1 of 1) protein_coding-intron (ENSMUSG00000047907.11, intron 1 of 1) 27935 ENSMUSG00000103935.1 ENSMUSG00000103935 ENSMUST00000194482 AY702102 TEC Interval_19951 chr10 111478836 111480270 + 0 NA intron (ENSMUSG00000058799.16, intron 1 of 13) protein_coding-intron (ENSMUSG00000058799.16, intron 1 of 15) -1940 ENSMUSG00000087819.1 ENSMUSG00000087819 ENSMUST00000157194 Gm25117 snoRNA Interval_88875 chr2 11936299 11936552 + 0 NA Intergenic Intergenic 36343 ENSMUSG00000103542.1 ENSMUSG00000103542 ENSMUST00000193884 Gm34768 unprocessed_pseudogene Interval_14647 chr10 37666365 37667575 + 0 NA Intergenic Intergenic -214290 ENSMUSG00000111549.1 ENSMUSG00000111549 ENSMUST00000215235 Gm48172 processed_pseudogene Interval_158711 chr8 85481684 85482801 + 0 NA Intergenic Intergenic -37167 ENSMUSG00000031700.11 ENSMUSG00000031700 ENSMUST00000143846 Gpt2 protein_coding Interval_107635 chr3 109058790 109059695 + 0 NA Intergenic Intergenic 3608 ENSMUSG00000105371.1 ENSMUSG00000105371 ENSMUST00000200208 Gm44384 miRNA Interval_88817 chr2 11429587 11430034 + 0 NA Intergenic Intergenic 9586 ENSMUSG00000082314.2 ENSMUSG00000082314 ENSMUST00000117854 Gm13296 processed_pseudogene Interval_9203 chr1 155048884 155049335 + 0 NA intron (ENSMUSG00000101880.1, intron 1 of 3) lincRNA-intron (ENSMUSG00000101880.1, intron 1 of 3) 8070 ENSMUSG00000101880.1 ENSMUSG00000101880 ENSMUST00000190720 Gm29282 lincRNA Interval_136225 chr6 52163516 52164472 + 0 NA intron (ENSMUSG00000101298.1, intron 3 of 3) protein_coding-intron (ENSMUSG00000014704.10, intron 1 of 1) 837 ENSMUSG00000014704.10 ENSMUSG00000014704 ENSMUST00000014848 Hoxa2 protein_coding Interval_110409 chr3 157875671 157875894 + 0 NA Intergenic Intergenic 13092 ENSMUSG00000104862.1 ENSMUSG00000104862 ENSMUST00000200636 Gm6520 processed_pseudogene Interval_128431 chr5 113282403 113282842 + 0 NA exon (ENSMUSG00000042216.13, exon 9 of 25) protein_coding-exon (ENSMUSG00000042216.13, exon 9 of 25) -3286 ENSMUSG00000042216.13 ENSMUSG00000042216 ENSMUST00000140981 Sgsm1 protein_coding Interval_105694 chr3 88607220 88608104 + 0 NA promoter-TSS (ENSMUSG00000028059.16) protein_coding-promoter-TSS (ENSMUSG00000028059.16) -8481 ENSMUSG00000028059.16 ENSMUSG00000028059 ENSMUST00000176272 Arhgef2 protein_coding Interval_51531 chr14 29909017 29909300 + 0 NA Intergenic Intergenic 6208 ENSMUSG00000114606.1 ENSMUSG00000114606 ENSMUST00000223966 Gm7633 transcribed_processed_pseudogene Interval_149506 chr7 99200904 99201169 + 0 NA Intergenic Intergenic -1330 ENSMUSG00000109052.1 ENSMUSG00000109052 ENSMUST00000208323 Gm45012 antisense Interval_89993 chr2 27142016 27142877 + 0 NA promoter-TSS (ENSMUSG00000009216.7) protein_coding-promoter-TSS (ENSMUSG00000009216.7) 45 ENSMUSG00000009216.7 ENSMUSG00000009216 ENSMUST00000151224 Fam163b protein_coding Interval_23081 chr11 19811204 19812324 + 0 NA Intergenic Intergenic 28112 ENSMUSG00000081820.1 ENSMUSG00000081820 ENSMUST00000120073 Gm12029 processed_pseudogene Interval_47401 chr13 83532165 83532397 + 0 NA intron (ENSMUSG00000005583.16, intron 1 of 3) protein_coding-intron (ENSMUSG00000005583.16, intron 2 of 10) 7990 ENSMUSG00000005583.16 ENSMUSG00000005583 ENSMUST00000197145 Mef2c protein_coding Interval_85044 chr19 21767002 21768434 + 0 NA Intergenic Intergenic -10670 ENSMUSG00000024754.13 ENSMUSG00000024754 ENSMUST00000238079 Cemip2 protein_coding Interval_40791 chr12 108452494 108452786 + 0 NA intron (ENSMUSG00000058070.14, intron 1 of 20) protein_coding-intron (ENSMUSG00000058070.14, intron 1 of 21) -11370 ENSMUSG00000082203.1 ENSMUSG00000082203 ENSMUST00000119205 Gm15636 processed_pseudogene Interval_3294 chr1 55836885 55837183 + 0 NA Intergenic Intergenic -94207 ENSMUSG00000099950.1 ENSMUSG00000099950 ENSMUST00000188040 9130227L01Rik lincRNA Interval_118739 chr4 133468000 133469897 + 0 NA Intergenic Intergenic -11184 ENSMUSG00000046694.6 ENSMUSG00000046694 ENSMUST00000051676 Tent5b protein_coding Interval_88129 chr19 59451247 59452106 + 0 NA intron (ENSMUSG00000087095.2, intron 1 of 3) antisense-intron (ENSMUSG00000087095.2, intron 1 of 3) 6959 ENSMUSG00000087095.2 ENSMUSG00000087095 ENSMUST00000136990 Emx2os antisense Interval_79160 chr18 25126831 25127050 + 0 NA TTS (ENSMUSG00000024269.11) protein_coding-TTS (ENSMUSG00000024269.11) 41754 ENSMUSG00000024269.11 ENSMUSG00000024269 ENSMUST00000115817 Tpgs2 protein_coding Interval_156017 chr8 42271942 42272687 + 0 NA Intergenic Intergenic 25403 ENSMUSG00000053038.8 ENSMUSG00000053038 ENSMUST00000065243 Gm6180 processed_pseudogene Interval_168554 chr9 83538048 83538416 + 0 NA Intergenic Intergenic -10097 ENSMUSG00000032261.16 ENSMUSG00000032261 ENSMUST00000185664 Sh3bgrl2 protein_coding Interval_168873 chr9 88266900 88267067 + 0 NA Intergenic Intergenic 7088 ENSMUSG00000100782.1 ENSMUSG00000100782 ENSMUST00000190118 Gm28231 lincRNA Interval_106624 chr3 97879423 97880435 + 0 NA intron (ENSMUSG00000038170.15, intron 1 of 45) protein_coding-intron (ENSMUSG00000038170.15, intron 1 of 46) 21160 ENSMUSG00000086557.1 ENSMUSG00000086557 ENSMUST00000127317 Gm15999 lincRNA Interval_76066 chr17 74672739 74673831 + 0 NA intron (ENSMUSG00000024073.16, intron 8 of 17) protein_coding-intron (ENSMUSG00000024073.16, intron 64 of 72) 37563 ENSMUSG00000024073.16 ENSMUSG00000024073 ENSMUST00000182157 Birc6 protein_coding Interval_161434 chr8 120442724 120442919 + 0 NA TTS (ENSMUSG00000080549.2) miRNA-TTS (ENSMUSG00000080549.2) 728 ENSMUSG00000080549.2 ENSMUSG00000080549 ENSMUST00000116899 Gm22715 miRNA Interval_162430 chr8 128667523 128667777 + 0 NA Intergenic Intergenic 13337 ENSMUSG00000110654.1 ENSMUSG00000110654 ENSMUST00000212623 Gm45746 TEC Interval_109433 chr3 142339206 142339935 + 0 NA intron (ENSMUSG00000028273.15, intron 2 of 12) protein_coding-intron (ENSMUSG00000028273.15, intron 3 of 12) -35591 ENSMUSG00000028273.15 ENSMUSG00000028273 ENSMUST00000058626 Pdlim5 protein_coding Interval_95947 chr2 118613877 118615713 + 0 NA intron (ENSMUSG00000040084.9, intron 6 of 22) protein_coding-intron (ENSMUSG00000040084.9, intron 6 of 22) -15782 ENSMUSG00000040084.9 ENSMUSG00000040084 ENSMUST00000126013 Bub1b protein_coding Interval_147420 chr7 66789851 66791227 + 0 NA intron (ENSMUSG00000030510.11, intron 8 of 9) protein_coding-intron (ENSMUSG00000030510.11, intron 9 of 10) 26370 ENSMUSG00000030510.11 ENSMUSG00000030510 ENSMUST00000208521 Cers3 protein_coding Interval_166761 chr9 62479028 62480166 + 0 NA intron (ENSMUSG00000041729.15, intron 2 of 3) protein_coding-intron (ENSMUSG00000041729.15, intron 2 of 11) -30449 ENSMUSG00000041729.15 ENSMUSG00000041729 ENSMUST00000123379 Coro2b protein_coding Interval_97576 chr2 140042958 140043190 + 0 NA promoter-TSS (ENSMUSG00000039033.11) protein_coding-promoter-TSS (ENSMUSG00000039033.11) -860 ENSMUSG00000039033.11 ENSMUSG00000039033 ENSMUST00000124949 Tasp1 protein_coding Interval_169531 chr9 98929376 98929856 + 0 NA Intergenic Intergenic -4004 ENSMUSG00000101240.1 ENSMUSG00000101240 ENSMUST00000191410 Gm28266 processed_pseudogene Interval_29489 chr11 84411308 84411979 + 0 NA Intergenic Intergenic 101879 ENSMUSG00000018697.14 ENSMUSG00000018697 ENSMUST00000148434 Aatf protein_coding Interval_25485 chr11 48876797 48877505 + 0 NA Intergenic Intergenic -5468 ENSMUSG00000046879.7 ENSMUSG00000046879 ENSMUST00000097271 Irgm1 protein_coding Interval_39565 chr12 90743303 90743798 + 0 NA intron (ENSMUSG00000097157.2, intron 1 of 5) bidirectional_promoter_lncRNA-intron (ENSMUSG00000097157.2, intron 1 of 3) -5112 ENSMUSG00000007682.6 ENSMUSG00000007682 ENSMUST00000082432 Dio2 protein_coding Interval_37223 chr12 61390551 61390743 + 0 NA Intergenic Intergenic -36756 ENSMUSG00000098029.2 ENSMUSG00000098029 ENSMUST00000182235 Gm7745 transcribed_processed_pseudogene Interval_140436 chr6 118076470 118077051 + 0 NA intron (ENSMUSG00000030134.11, intron 1 of 12) protein_coding-intron (ENSMUSG00000030134.11, intron 1 of 12) -8432 ENSMUSG00000098583.1 ENSMUSG00000098583 ENSMUST00000184597 Mir7044 miRNA Interval_114796 chr4 85323051 85323248 + 0 NA intron (ENSMUSG00000028488.15, intron 1 of 7) protein_coding-intron (ENSMUSG00000028488.15, intron 1 of 8) -53192 ENSMUSG00000028488.15 ENSMUSG00000028488 ENSMUST00000133109 Sh3gl2 protein_coding Interval_43682 chr13 34963469 34965147 + 0 NA promoter-TSS (ENSMUSG00000021416.11) protein_coding-promoter-TSS (ENSMUSG00000021416.11) 250 ENSMUSG00000085962.8 ENSMUSG00000085962 ENSMUST00000171079 Gm16984 antisense Interval_149479 chr7 98938080 98938464 + 0 NA intron (ENSMUSG00000035354.9, intron 8 of 10) protein_coding-intron (ENSMUSG00000035354.9, intron 13 of 14) 2378 ENSMUSG00000089501.1 ENSMUSG00000089501 ENSMUST00000158876 Gm23479 snoRNA Interval_114301 chr4 71821568 71821799 + 0 NA Intergenic Intergenic -46305 ENSMUSG00000081117.1 ENSMUSG00000081117 ENSMUST00000122357 Gm11233 processed_pseudogene Interval_69213 chr16 91395832 91396386 + 0 NA intron (ENSMUSG00000093701.7, intron 2 of 4) protein_coding-intron (ENSMUSG00000022971.18, intron 7 of 8) 4388 ENSMUSG00000093701.7 ENSMUSG00000093701 ENSMUST00000160764 Gm21970 protein_coding Interval_113132 chr4 48548592 48548800 + 0 NA intron (ENSMUSG00000039693.11, intron 1 of 2) protein_coding-intron (ENSMUSG00000039693.11, intron 1 of 2) 8150 ENSMUSG00000039693.11 ENSMUSG00000039693 ENSMUST00000132360 Msantd3 protein_coding Interval_103564 chr3 49749396 49749815 + 0 NA intron (ENSMUSG00000037892.13, intron 3 of 3) protein_coding-intron (ENSMUSG00000037892.13, intron 3 of 3) 7678 ENSMUSG00000037892.13 ENSMUSG00000037892 ENSMUST00000195086 Pcdh18 protein_coding Interval_55964 chr14 103354499 103354730 + 0 NA Intergenic Intergenic -7814 ENSMUSG00000033004.16 ENSMUSG00000033004 ENSMUST00000162537 Mycbp2 protein_coding Interval_28461 chr11 76044329 76044651 + 0 NA Intergenic Intergenic -16708 ENSMUSG00000020846.6 ENSMUSG00000020846 ENSMUST00000021207 Rflnb protein_coding Interval_174306 chrX 144294879 144296229 + 0 NA Intergenic Intergenic -2236 ENSMUSG00000076117.1 ENSMUSG00000076117 ENSMUST00000102163 Mir680-2 miRNA Interval_28502 chr11 76374240 76375343 + 0 NA intron (ENSMUSG00000020844.6, intron 1 of 1) protein_coding-intron (ENSMUSG00000020844.6, intron 1 of 7) 24277 ENSMUSG00000020844.6 ENSMUSG00000020844 ENSMUST00000131472 Nxn protein_coding Interval_5525 chr1 89553912 89554309 + 0 NA intron (ENSMUSG00000055013.16, intron 1 of 16) protein_coding-intron (ENSMUSG00000055013.16, intron 1 of 17) -9250 ENSMUSG00000088371.1 ENSMUSG00000088371 ENSMUST00000157746 Gm25180 rRNA Interval_64929 chr16 17292470 17293202 + 0 NA intron (ENSMUSG00000041720.14, intron 42 of 54) protein_coding-intron (ENSMUSG00000041720.14, intron 42 of 54) -11191 ENSMUSG00000041720.14 ENSMUSG00000041720 ENSMUST00000231419 Pi4ka protein_coding Interval_140230 chr6 115694733 115694934 + 0 NA Intergenic Intergenic 18865 ENSMUSG00000107994.1 ENSMUSG00000107994 ENSMUST00000203121 D830050J10Rik bidirectional_promoter_lncRNA Interval_67957 chr16 60772961 60773220 + 0 NA Intergenic Intergenic -73799 ENSMUSG00000098819.1 ENSMUSG00000098819 ENSMUST00000184926 Gm27784 miRNA Interval_27499 chr11 68253408 68253783 + 0 NA intron (ENSMUSG00000020902.12, intron 6 of 7) protein_coding-intron (ENSMUSG00000020902.12, intron 5 of 6) 17284 ENSMUSG00000084993.1 ENSMUSG00000084993 ENSMUST00000151817 Gm12305 sense_intronic Interval_82643 chr18 75584412 75586677 + 0 NA intron (ENSMUSG00000052928.9, intron 6 of 11) protein_coding-intron (ENSMUSG00000052928.9, intron 6 of 11) 51729 ENSMUSG00000052928.9 ENSMUSG00000052928 ENSMUST00000235147 Ctif protein_coding Interval_104752 chr3 70457661 70458741 + 0 NA Intergenic Intergenic 44882 ENSMUSG00000102663.1 ENSMUSG00000102663 ENSMUST00000193699 Gm6631 processed_pseudogene Interval_53740 chr14 61338072 61340144 + 0 NA TTS (ENSMUSG00000021928.9) protein_coding-TTS (ENSMUSG00000021928.9) 3959 ENSMUSG00000089253.1 ENSMUSG00000089253 ENSMUST00000158628 Gm25716 snRNA Interval_61660 chr15 83250986 83252227 + 0 NA intron (ENSMUSG00000047878.13, intron 1 of 2) protein_coding-intron (ENSMUSG00000047878.13, intron 1 of 2) 123 ENSMUSG00000047878.13 ENSMUSG00000047878 ENSMUST00000229454 A4galt protein_coding Interval_18301 chr10 84711577 84713040 + 0 NA intron (ENSMUSG00000034453.8, intron 23 of 27) protein_coding-intron (ENSMUSG00000034453.8, intron 23 of 27) -49930 ENSMUSG00000020037.15 ENSMUSG00000020037 ENSMUST00000095388 Rfx4 protein_coding Interval_38711 chr12 81434971 81435667 + 0 NA intron (ENSMUSG00000091803.7, intron 3 of 4) protein_coding-intron (ENSMUSG00000091803.7, intron 3 of 3) -13373 ENSMUSG00000072972.3 ENSMUSG00000072972 ENSMUST00000085319 Adam4 protein_coding Interval_162229 chr8 126223198 126223473 + 0 NA intron (ENSMUSG00000057060.8, intron 1 of 5) protein_coding-intron (ENSMUSG00000057060.8, intron 1 of 5) 84340 ENSMUSG00000057060.8 ENSMUSG00000057060 ENSMUST00000108759 Slc35f3 protein_coding Interval_22378 chr11 9262521 9263582 + 0 NA intron (ENSMUSG00000004668.14, intron 8 of 61) protein_coding-intron (ENSMUSG00000004668.14, intron 8 of 61) 69600 ENSMUSG00000004668.14 ENSMUSG00000004668 ENSMUST00000151522 Abca13 protein_coding Interval_146087 chr7 43787116 43787713 + 0 NA intron (ENSMUSG00000097178.7, intron 1 of 6) processed_transcript-intron (ENSMUSG00000097178.7, intron 1 of 6) -4477 ENSMUSG00000047884.6 ENSMUSG00000047884 ENSMUST00000005891 Klk9 protein_coding Interval_72631 chr17 31193334 31193625 + 0 NA exon (ENSMUSG00000024034.13, exon 4 of 12) protein_coding-exon (ENSMUSG00000024034.13, exon 4 of 12) 4692 ENSMUSG00000024034.13 ENSMUSG00000024034 ENSMUST00000236793 Tmprss3 protein_coding Interval_155712 chr8 36361281 36361685 + 0 NA Intergenic Intergenic 12150 ENSMUSG00000098154.2 ENSMUSG00000098154 ENSMUST00000183049 Gm5787 processed_pseudogene Interval_100427 chr2 168954781 168956577 + 0 NA promoter-TSS (ENSMUSG00000027551.15) protein_coding-promoter-TSS (ENSMUSG00000027551.15) -413 ENSMUSG00000027551.15 ENSMUSG00000027551 ENSMUST00000136242 Zfp64 protein_coding Interval_101324 chr2 180447030 180447264 + 0 NA Intergenic Intergenic -9187 ENSMUSG00000038963.15 ENSMUSG00000038963 ENSMUST00000128367 Slco4a1 protein_coding Interval_153518 chr8 3021402 3021794 + 0 NA Intergenic Intergenic -34696 ENSMUSG00000108612.2 ENSMUSG00000108612 ENSMUST00000206119 Gm44634 unprocessed_pseudogene Interval_17080 chr10 71247094 71247366 + 0 NA Intergenic Intergenic 9658 ENSMUSG00000019927.6 ENSMUSG00000019927 ENSMUST00000144231 Ube2d1 protein_coding Interval_57779 chr15 19662818 19663023 + 0 NA Intergenic Intergenic -15312 ENSMUSG00000115413.1 ENSMUSG00000115413 ENSMUST00000226230 Gm49166 lincRNA Interval_169362 chr9 96708171 96708355 + 0 NA intron (ENSMUSG00000102097.1, intron 1 of 1) protein_coding-intron (ENSMUSG00000040433.16, intron 2 of 2) 2435 ENSMUSG00000102097.1 ENSMUSG00000102097 ENSMUST00000186821 A930006L05Rik antisense Interval_130603 chr5 129147070 129147303 + 0 NA intron (ENSMUSG00000044017.16, intron 13 of 24) protein_coding-intron (ENSMUSG00000044017.16, intron 14 of 25) -18669 ENSMUSG00000060419.8 ENSMUSG00000060419 ENSMUST00000140155 Rps16-ps2 processed_pseudogene Interval_155964 chr8 41315286 41315974 + 0 NA intron (ENSMUSG00000031592.10, intron 29 of 38) protein_coding-intron (ENSMUSG00000031592.10, intron 28 of 37) 59143 ENSMUSG00000031591.14 ENSMUSG00000031591 ENSMUST00000143057 Asah1 protein_coding Interval_25998 chr11 53409722 53409917 + 0 NA promoter-TSS (ENSMUSG00000049470.13) protein_coding-promoter-TSS (ENSMUSG00000049470.13) 622 ENSMUSG00000105908.1 ENSMUSG00000105908 ENSMUST00000195888 Mir6920 miRNA Interval_111401 chr4 20809918 20810472 + 0 NA Intergenic Intergenic -31628 ENSMUSG00000055761.14 ENSMUSG00000055761 ENSMUST00000102998 Nkain3 protein_coding Interval_73971 chr17 45764972 45765285 + 0 NA intron (ENSMUSG00000097727.8, intron 1 of 2) lincRNA-intron (ENSMUSG00000097727.8, intron 1 of 2) -2067 ENSMUSG00000097727.8 ENSMUSG00000097727 ENSMUST00000233473 F630040K05Rik lincRNA Interval_143531 chr7 12168170 12168772 + 0 NA Intergenic Intergenic -2808 ENSMUSG00000096735.3 ENSMUSG00000096735 ENSMUST00000062811 Vmn1r79 protein_coding Interval_37754 chr12 71718363 71719148 + 0 NA TTS (ENSMUSG00000114028.1) lincRNA-TTS (ENSMUSG00000114028.1) -5897 ENSMUSG00000084463.1 ENSMUSG00000084463 ENSMUST00000122514 Gm22959 misc_RNA Interval_85672 chr19 29556994 29557424 + 0 NA intron (ENSMUSG00000038658.15, intron 2 of 23) protein_coding-intron (ENSMUSG00000038658.15, intron 3 of 25) 23973 ENSMUSG00000038658.15 ENSMUSG00000038658 ENSMUST00000161330 Ric1 protein_coding Interval_79674 chr18 34439603 34440354 + 0 NA intron (ENSMUSG00000014503.15, intron 14 of 14) protein_coding-intron (ENSMUSG00000014503.15, intron 14 of 14) 31489 ENSMUSG00000014503.15 ENSMUSG00000014503 ENSMUST00000166156 Pkd2l2 protein_coding Interval_21489 chr10 128888926 128889418 + 0 NA intron (ENSMUSG00000025352.6, intron 1 of 2) protein_coding-intron (ENSMUSG00000025352.6, intron 1 of 2) 2546 ENSMUSG00000025352.6 ENSMUSG00000025352 ENSMUST00000026408 Gdf11 protein_coding Interval_21386 chr10 128302841 128304333 + 0 NA intron (ENSMUSG00000005682.9, intron 1 of 1) protein_coding-intron (ENSMUSG00000005682.9, intron 1 of 25) 211 ENSMUSG00000005682.9 ENSMUSG00000005682 ENSMUST00000219255 Pan2 protein_coding Interval_112384 chr4 40963671 40964152 + 0 NA intron (ENSMUSG00000028419.5, intron 7 of 7) protein_coding-intron (ENSMUSG00000028419.5, intron 7 of 7) 15504 ENSMUSG00000028419.5 ENSMUSG00000028419 ENSMUST00000030128 Chmp5 protein_coding Interval_124981 chr5 63174861 63175088 + 0 NA Intergenic Intergenic 363300 ENSMUSG00000090326.2 ENSMUSG00000090326 ENSMUST00000170704 Dthd1 protein_coding Interval_3164 chr1 54341627 54341864 + 0 NA intron (ENSMUSG00000025983.11, intron 1 of 11) protein_coding-intron (ENSMUSG00000025983.11, intron 17 of 27) 11753 ENSMUSG00000025983.11 ENSMUSG00000025983 ENSMUST00000159682 Ccdc150 protein_coding Interval_149139 chr7 94586048 94586353 + 0 NA intron (ENSMUSG00000108532.1, intron 2 of 2) lincRNA-intron (ENSMUSG00000108532.1, intron 2 of 2) 16208 ENSMUSG00000108433.1 ENSMUSG00000108433 ENSMUST00000205372 Gm19761 processed_pseudogene Interval_14184 chr10 28459980 28460187 + 0 NA intron (ENSMUSG00000019889.10, intron 7 of 14) protein_coding-intron (ENSMUSG00000019889.10, intron 7 of 31) -126910 ENSMUSG00000019889.10 ENSMUSG00000019889 ENSMUST00000220404 Ptprk protein_coding Interval_59771 chr15 59129566 59130589 + 0 NA Intergenic Intergenic -48072 ENSMUSG00000022353.10 ENSMUSG00000022353 ENSMUST00000227797 Mtss1 protein_coding Interval_54641 chr14 72602503 72603429 + 0 NA promoter-TSS (ENSMUSG00000033487.14) protein_coding-promoter-TSS (ENSMUSG00000033487.14) 13214 ENSMUSG00000090216.1 ENSMUSG00000090216 ENSMUST00000160445 Gm16549 antisense Interval_85354 chr19 25132263 25132732 + 0 NA intron (ENSMUSG00000052085.7, intron 22 of 47) protein_coding-intron (ENSMUSG00000052085.7, intron 22 of 47) 33719 ENSMUSG00000065634.1 ENSMUSG00000065634 ENSMUST00000083700 Gm24252 snoRNA Interval_2911 chr1 49559826 49560068 + 0 NA Intergenic Intergenic 19639 ENSMUSG00000099882.1 ENSMUSG00000099882 ENSMUST00000186262 Gm28388 processed_pseudogene Interval_1908 chr1 34469638 34470292 + 0 NA TTS (ENSMUSG00000100280.2) processed_transcript-TTS (ENSMUSG00000100280.2) 469 ENSMUSG00000100280.2 ENSMUSG00000100280 ENSMUST00000185881 Gm28417 processed_transcript Interval_99659 chr2 164021571 164022692 + 0 NA Intergenic Intergenic -14869 ENSMUSG00000054582.4 ENSMUSG00000054582 ENSMUST00000150523 Pabpc1l protein_coding Interval_109985 chr3 152308550 152309171 + 0 NA intron (ENSMUSG00000054942.13, intron 1 of 2) protein_coding-intron (ENSMUSG00000054942.13, intron 7 of 13) 31524 ENSMUSG00000054942.13 ENSMUSG00000054942 ENSMUST00000200241 Miga1 protein_coding Interval_70324 chr17 8493215 8493715 + 0 NA Intergenic Intergenic 58054 ENSMUSG00000062327.10 ENSMUSG00000062327 ENSMUST00000177118 T protein_coding Interval_165485 chr9 48611230 48611629 + 0 NA Intergenic Intergenic -14054 ENSMUSG00000032271.13 ENSMUSG00000032271 ENSMUST00000128076 Nnmt protein_coding Interval_85658 chr19 29402481 29403390 + 0 NA Intergenic Intergenic -19124 ENSMUSG00000016498.10 ENSMUSG00000016498 ENSMUST00000235164 Pdcd1lg2 protein_coding Interval_104397 chr3 65261251 65261774 + 0 NA intron (ENSMUSG00000027827.17, intron 1 of 14) protein_coding-intron (ENSMUSG00000027827.17, intron 1 of 13) 41173 ENSMUSG00000104093.1 ENSMUSG00000104093 ENSMUST00000195489 A330015K06Rik antisense Interval_129835 chr5 122653085 122654509 + 0 NA intron (ENSMUSG00000029468.17, intron 2 of 12) protein_coding-intron (ENSMUSG00000029468.17, intron 2 of 12) 3373 ENSMUSG00000029468.17 ENSMUSG00000029468 ENSMUST00000197042 P2rx7 protein_coding Interval_114768 chr4 84907035 84907225 + 0 NA intron (ENSMUSG00000038070.15, intron 2 of 25) protein_coding-intron (ENSMUSG00000038070.15, intron 2 of 25) -8766 ENSMUSG00000083139.1 ENSMUSG00000083139 ENSMUST00000118116 Gm12418 processed_pseudogene Interval_14867 chr10 40631329 40631654 + 0 NA promoter-TSS (ENSMUSG00000063428.8) protein_coding-promoter-TSS (ENSMUSG00000063428.8) 1414 ENSMUSG00000063428.8 ENSMUSG00000063428 ENSMUST00000214618 Ddo protein_coding Interval_20099 chr10 114608002 114610083 + 0 NA intron (ENSMUSG00000050663.8, intron 3 of 18) protein_coding-intron (ENSMUSG00000050663.8, intron 3 of 18) -148705 ENSMUSG00000089934.1 ENSMUSG00000089934 ENSMUST00000161975 4930473D10Rik antisense Interval_129879 chr5 122890248 122890884 + 0 NA intron (ENSMUSG00000029475.17, intron 1 of 2) protein_coding-intron (ENSMUSG00000029475.17, intron 1 of 11) 17834 ENSMUSG00000105979.1 ENSMUSG00000105979 ENSMUST00000196235 Gm43411 TEC Interval_51068 chr14 21968713 21969563 + 0 NA Intergenic Intergenic 20463 ENSMUSG00000039081.10 ENSMUSG00000039081 ENSMUST00000043409 Zfp503 protein_coding Interval_102484 chr3 27128447 27128851 + 0 NA intron (ENSMUSG00000027699.19, intron 14 of 23) protein_coding-intron (ENSMUSG00000027699.19, intron 14 of 18) 18552 ENSMUSG00000027699.19 ENSMUSG00000027699 ENSMUST00000175857 Ect2 protein_coding Interval_6057 chr1 95268060 95268631 + 0 NA Intergenic Intergenic -11535 ENSMUSG00000099592.1 ENSMUSG00000099592 ENSMUST00000190584 Gm5264 processed_pseudogene Interval_65893 chr16 30099128 30099707 + 0 NA Intergenic Intergenic -6535 ENSMUSG00000116997.1 ENSMUSG00000116997 ENSMUST00000232024 Gm20040 processed_pseudogene Interval_128506 chr5 113700302 113702178 + 0 NA intron (ENSMUSG00000042184.11, intron 2 of 2) protein_coding-intron (ENSMUSG00000042184.11, intron 2 of 2) 23532 ENSMUSG00000042184.11 ENSMUSG00000042184 ENSMUST00000047891 1700069L16Rik protein_coding Interval_164492 chr9 37468305 37468632 + 0 NA Intergenic Intergenic 10175 ENSMUSG00000111702.1 ENSMUSG00000111702 ENSMUST00000214167 Gm47945 unprocessed_pseudogene Interval_12030 chr1 188979831 188980624 + 0 NA TTS (ENSMUSG00000026608.13) protein_coding-TTS (ENSMUSG00000026608.13) 27614 ENSMUSG00000026608.13 ENSMUSG00000026608 ENSMUST00000193273 Kctd3 protein_coding Interval_25338 chr11 46461846 46462347 + 0 NA intron (ENSMUSG00000020399.14, intron 4 of 7) protein_coding-intron (ENSMUSG00000020399.14, intron 3 of 6) 7127 ENSMUSG00000020399.14 ENSMUSG00000020399 ENSMUST00000109229 Havcr2 protein_coding Interval_52838 chr14 50976624 50977148 + 0 NA Intergenic Intergenic 2050 ENSMUSG00000115312.1 ENSMUSG00000115312 ENSMUST00000228819 Gm8518 processed_pseudogene Interval_22303 chr11 8623554 8626865 + 0 NA promoter-TSS (ENSMUSG00000020422.14) protein_coding-promoter-TSS (ENSMUSG00000020422.14) 39472 ENSMUSG00000020422.14 ENSMUSG00000020422 ENSMUST00000134823 Tns3 protein_coding Interval_119500 chr4 137956269 137956771 + 0 NA exon (ENSMUSG00000057530.14, exon 16 of 20) protein_coding-exon (ENSMUSG00000057530.14, exon 16 of 20) -36993 ENSMUSG00000028760.16 ENSMUSG00000028760 ENSMUST00000148074 Eif4g3 protein_coding Interval_67171 chr16 44128770 44129117 + 0 NA intron (ENSMUSG00000052459.13, intron 1 of 3) protein_coding-intron (ENSMUSG00000052459.13, intron 1 of 14) 10762 ENSMUSG00000052459.13 ENSMUSG00000052459 ENSMUST00000147025 Atp6v1a protein_coding Interval_63388 chr15 100761286 100762481 + 0 NA promoter-TSS (ENSMUSG00000023032.12) protein_coding-promoter-TSS (ENSMUSG00000023032.12) -29146 ENSMUSG00000116504.1 ENSMUSG00000116504 ENSMUST00000230334 I730030J21Rik processed_transcript Interval_59696 chr15 58685245 58685755 + 0 NA Intergenic Intergenic 96451 ENSMUSG00000093677.1 ENSMUSG00000093677 ENSMUST00000176387 Gm20712 sense_overlapping Interval_31672 chr11 102179647 102179888 + 0 NA intron (ENSMUSG00000020922.11, intron 1 of 3) protein_coding-intron (ENSMUSG00000020922.11, intron 2 of 4) 5494 ENSMUSG00000020922.11 ENSMUSG00000020922 ENSMUST00000153276 Lsm12 protein_coding Interval_43721 chr13 35772015 35772558 + 0 NA intron (ENSMUSG00000059288.14, intron 1 of 2) protein_coding-intron (ENSMUSG00000059288.14, intron 3 of 9) 4610 ENSMUSG00000114373.1 ENSMUSG00000114373 ENSMUST00000224745 Gm48708 antisense Interval_65094 chr16 19035283 19037053 + 0 NA Intergenic Intergenic 7936 ENSMUSG00000060811.4 ENSMUSG00000060811 ENSMUST00000074116 Gm10088 processed_pseudogene Interval_89614 chr2 23270604 23270852 + 0 NA Intergenic Intergenic 35492 ENSMUSG00000084098.1 ENSMUSG00000084098 ENSMUST00000118834 Gm13422 processed_pseudogene Interval_130829 chr5 131039892 131040151 + 0 NA intron (ENSMUSG00000034040.16, intron 5 of 5) protein_coding-intron (ENSMUSG00000034040.16, intron 5 of 10) 2949 ENSMUSG00000106729.1 ENSMUSG00000106729 ENSMUST00000200842 Gm43165 TEC Interval_43639 chr13 34308184 34308435 + 0 NA intron (ENSMUSG00000038267.15, intron 1 of 9) protein_coding-intron (ENSMUSG00000038267.15, intron 1 of 10) -10499 ENSMUSG00000113430.1 ENSMUSG00000113430 ENSMUST00000223463 Gm47086 processed_pseudogene Interval_126961 chr5 98383925 98384405 + 0 NA intron (ENSMUSG00000057816.7, intron 2 of 6) protein_coding-intron (ENSMUSG00000057816.7, intron 2 of 5) 37771 ENSMUSG00000104545.1 ENSMUSG00000104545 ENSMUST00000198813 E030032P16Rik TEC Interval_137583 chr6 73724928 73725101 + 0 NA Intergenic Intergenic -116341 ENSMUSG00000107441.1 ENSMUSG00000107441 ENSMUST00000204638 Gm31747 lincRNA Interval_167848 chr9 73052074 73053131 + 0 NA intron (ENSMUSG00000032202.11, intron 1 of 3) protein_coding-intron (ENSMUSG00000032202.11, intron 1 of 5) 7618 ENSMUSG00000032202.11 ENSMUSG00000032202 ENSMUST00000184032 Rab27a protein_coding Interval_173658 chrX 101532439 101533235 + 0 NA promoter-TSS (ENSMUSG00000031314.18) protein_coding-promoter-TSS (ENSMUSG00000031314.18) 13852 ENSMUSG00000081674.1 ENSMUSG00000081674 ENSMUST00000120403 Gm6184 processed_pseudogene Interval_109124 chr3 135965613 135965986 + 0 NA intron (ENSMUSG00000104710.1, intron 1 of 3) antisense-intron (ENSMUSG00000104710.1, intron 1 of 3) -2041 ENSMUSG00000105937.1 ENSMUSG00000105937 ENSMUST00000196772 Gm43602 processed_pseudogene Interval_106522 chr3 96896174 96896677 + 0 NA intron (ENSMUSG00000028096.13, intron 1 of 6) protein_coding-intron (ENSMUSG00000028096.13, intron 3 of 13) 2122 ENSMUSG00000028096.13 ENSMUSG00000028096 ENSMUST00000154750 Gpr89 protein_coding Interval_37591 chr12 70129133 70129684 + 0 NA Intergenic Intergenic 15834 ENSMUSG00000114099.1 ENSMUSG00000114099 ENSMUST00000221641 Gm48695 bidirectional_promoter_lncRNA Interval_129578 chr5 121081553 121082023 + 0 NA Intergenic Intergenic 61847 ENSMUSG00000043733.14 ENSMUSG00000043733 ENSMUST00000148871 Ptpn11 protein_coding Interval_127439 chr5 103937059 103937426 + 0 NA Intergenic Intergenic 38363 ENSMUSG00000095133.1 ENSMUSG00000095133 ENSMUST00000179033 Gm24897 snRNA Interval_91092 chr2 34982171 34983601 + 0 NA TTS (ENSMUSG00000026874.10) protein_coding-TTS (ENSMUSG00000026874.10) -11087 ENSMUSG00000085599.1 ENSMUSG00000085599 ENSMUST00000153559 Gm13449 antisense Interval_101050 chr2 174594975 174595391 + 0 NA Intergenic Intergenic 3953 ENSMUSG00000082353.1 ENSMUSG00000082353 ENSMUST00000118738 Vmn1r-ps1 processed_pseudogene Interval_12018 chr1 188891907 188892174 + 0 NA intron (ENSMUSG00000026609.15, intron 60 of 70) protein_coding-intron (ENSMUSG00000026609.15, intron 60 of 70) 115801 ENSMUSG00000026608.13 ENSMUSG00000026608 ENSMUST00000193273 Kctd3 protein_coding Interval_79405 chr18 31703834 31705420 + 0 NA intron (ENSMUSG00000024260.14, intron 16 of 20) protein_coding-intron (ENSMUSG00000024260.14, intron 16 of 20) -34088 ENSMUSG00000117533.1 ENSMUSG00000117533 ENSMUST00000234849 Gm50060 processed_pseudogene Interval_48697 chr13 101597395 101597758 + 0 NA Intergenic Intergenic 8657 ENSMUSG00000099774.1 ENSMUSG00000099774 ENSMUST00000190179 Gm29341 lincRNA Interval_136834 chr6 61146178 61146443 + 0 NA TTS (ENSMUSG00000107652.1) lincRNA-TTS (ENSMUSG00000107652.1) 1597 ENSMUSG00000107652.1 ENSMUSG00000107652 ENSMUST00000203274 Gm43894 lincRNA Interval_96586 chr2 125970100 125970563 + 0 NA intron (ENSMUSG00000027207.15, intron 8 of 9) protein_coding-intron (ENSMUSG00000027207.15, intron 8 of 9) -64327 ENSMUSG00000027208.14 ENSMUSG00000027208 ENSMUST00000110442 Fgf7 protein_coding Interval_135532 chr6 40062145 40062476 + 0 NA intron (ENSMUSG00000057716.7, intron 2 of 3) protein_coding-intron (ENSMUSG00000057716.7, intron 2 of 3) 35416 ENSMUSG00000103331.1 ENSMUSG00000103331 ENSMUST00000194958 Gm37995 TEC Interval_22560 chr11 11788256 11789149 + 0 NA exon (ENSMUSG00000035455.12, exon 4 of 4) protein_coding-exon (ENSMUSG00000035455.12, exon 4 of 4) 20260 ENSMUSG00000035455.12 ENSMUSG00000035455 ENSMUST00000150714 Fignl1 protein_coding Interval_43330 chr13 29277557 29279584 + 0 NA intron (ENSMUSG00000006191.17, intron 15 of 16) protein_coding-intron (ENSMUSG00000006191.17, intron 15 of 16) -41950 ENSMUSG00000086423.1 ENSMUSG00000086423 ENSMUST00000137593 Gm11364 sense_intronic Interval_161695 chr8 122104176 122105785 + 0 NA intron (ENSMUSG00000092329.1, intron 1 of 15) protein_coding-intron (ENSMUSG00000092329.1, intron 1 of 15) 126956 ENSMUSG00000099140.1 ENSMUSG00000099140 ENSMUST00000184699 Mir7237 miRNA Interval_160025 chr8 105868652 105869082 + 0 NA intron (ENSMUSG00000008450.8, intron 2 of 2) protein_coding-intron (ENSMUSG00000008450.8, intron 1 of 4) 8222 ENSMUSG00000008450.8 ENSMUSG00000008450 ENSMUST00000212042 Nutf2 protein_coding Interval_55981 chr14 103612051 103612265 + 0 NA intron (ENSMUSG00000022123.9, intron 29 of 29) protein_coding-intron (ENSMUSG00000022123.9, intron 30 of 30) 38399 ENSMUSG00000093192.1 ENSMUSG00000093192 ENSMUST00000175451 Gm22877 miRNA Interval_40927 chr12 109947064 109950837 + 0 NA Intergenic Intergenic 37165 ENSMUSG00000112940.1 ENSMUSG00000112940 ENSMUST00000223541 4930511J24Rik lincRNA Interval_32897 chr11 112886238 112886548 + 0 NA Intergenic Intergenic 61214 ENSMUSG00000020624.3 ENSMUSG00000020624 ENSMUST00000153429 4933434M16Rik lincRNA Interval_69605 chr16 94578586 94579743 + 0 NA intron (ENSMUSG00000022897.15, intron 1 of 5) protein_coding-intron (ENSMUSG00000022897.15, intron 1 of 11) 8257 ENSMUSG00000022897.15 ENSMUSG00000022897 ENSMUST00000134383 Dyrk1a protein_coding Interval_12087 chr1 189664159 189665075 + 0 NA intron (ENSMUSG00000026605.14, intron 10 of 17) protein_coding-intron (ENSMUSG00000026605.14, intron 10 of 11) 6525 ENSMUSG00000026605.14 ENSMUSG00000026605 ENSMUST00000194165 Cenpf protein_coding Interval_164192 chr9 32360026 32361100 + 0 NA intron (ENSMUSG00000111056.1, intron 2 of 2) lincRNA-intron (ENSMUSG00000111056.1, intron 2 of 2) 11881 ENSMUSG00000111056.1 ENSMUSG00000111056 ENSMUST00000213360 Gm39317 lincRNA Interval_96736 chr2 127576674 127577495 + 0 NA exon (ENSMUSG00000034800.15, exon 5 of 5) protein_coding-exon (ENSMUSG00000034800.15, exon 5 of 5) 4424 ENSMUSG00000034800.15 ENSMUSG00000034800 ENSMUST00000164551 Zfp661 protein_coding Interval_133198 chr5 150484461 150485806 + 0 NA intron (ENSMUSG00000056602.12, intron 58 of 60) protein_coding-intron (ENSMUSG00000056602.12, intron 58 of 60) 17000 ENSMUSG00000106738.1 ENSMUSG00000106738 ENSMUST00000202066 Gm5 lincRNA Interval_157636 chr8 71950515 71951684 + 0 NA promoter-TSS (ENSMUSG00000052446.17) protein_coding-promoter-TSS (ENSMUSG00000052446.17) -2348 ENSMUSG00000052446.17 ENSMUSG00000052446 ENSMUST00000151168 Zfp961 protein_coding Interval_95665 chr2 113832915 113833338 + 0 NA TTS (ENSMUSG00000041219.14) protein_coding-TTS (ENSMUSG00000041219.14) -4364 ENSMUSG00000023236.7 ENSMUSG00000023236 ENSMUST00000139975 Scg5 protein_coding Interval_136691 chr6 57801165 57801391 + 0 NA intron (ENSMUSG00000037788.14, intron 1 of 3) protein_coding-intron (ENSMUSG00000037788.14, intron 1 of 4) 23872 ENSMUSG00000037788.14 ENSMUSG00000037788 ENSMUST00000143953 Vopp1 protein_coding Interval_109669 chr3 145886010 145886380 + 0 NA intron (ENSMUSG00000028194.15, intron 4 of 4) protein_coding-intron (ENSMUSG00000028194.15, intron 4 of 5) 7175 ENSMUSG00000105388.1 ENSMUSG00000105388 ENSMUST00000197973 Rpl36a-ps2 processed_pseudogene Interval_139576 chr6 101490167 101490389 + 0 NA Intergenic Intergenic -29377 ENSMUSG00000108274.1 ENSMUSG00000108274 ENSMUST00000205133 Gm44169 lincRNA Interval_147990 chr7 76425853 76426109 + 0 NA intron (ENSMUSG00000025754.11, intron 15 of 22) protein_coding-intron (ENSMUSG00000025754.11, intron 9 of 12) -180043 ENSMUSG00000098009.1 ENSMUSG00000098009 ENSMUST00000182353 Gm5597 processed_pseudogene Interval_138218 chr6 86391309 86391743 + 0 NA TTS (ENSMUSG00000029998.14) protein_coding-TTS (ENSMUSG00000029998.14) 5615 ENSMUSG00000029998.14 ENSMUSG00000029998 ENSMUST00000203960 Pcyox1 protein_coding Interval_92265 chr2 57548656 57549270 + 0 NA Intergenic Intergenic 80265 ENSMUSG00000081642.1 ENSMUSG00000081642 ENSMUST00000120373 Gm13532 processed_pseudogene Interval_146183 chr7 44572134 44572650 + 0 NA promoter-TSS (ENSMUSG00000002204.9) protein_coding-promoter-TSS (ENSMUSG00000002204.9) -9962 ENSMUSG00000002204.9 ENSMUSG00000002204 ENSMUST00000207302 Napsa protein_coding Interval_82506 chr18 74740642 74742027 + 0 NA intron (ENSMUSG00000025885.18, intron 3 of 8) protein_coding-intron (ENSMUSG00000025885.18, intron 33 of 38) 27715 ENSMUSG00000025885.18 ENSMUSG00000025885 ENSMUST00000154986 Myo5b protein_coding Interval_126392 chr5 87863045 87863352 + 0 NA Intergenic Intergenic 12839 ENSMUSG00000067156.5 ENSMUSG00000067156 ENSMUST00000180954 Gm7337 transcribed_processed_pseudogene Interval_6495 chr1 112388387 112389186 + 0 NA Intergenic Intergenic 16069 ENSMUSG00000101054.1 ENSMUSG00000101054 ENSMUST00000185872 Gm18406 processed_pseudogene Interval_77984 chr18 6444553 6444765 + 0 NA intron (ENSMUSG00000024240.13, intron 10 of 13) protein_coding-intron (ENSMUSG00000024240.13, intron 10 of 13) -2765 ENSMUSG00000024240.13 ENSMUSG00000024240 ENSMUST00000050542 Epc1 protein_coding Interval_79282 chr18 29703478 29704248 + 0 NA Intergenic Intergenic -46267 ENSMUSG00000117626.1 ENSMUSG00000117626 ENSMUST00000234976 Gm7917 processed_pseudogene Interval_34888 chr12 12993853 12996023 + 0 NA TTS (ENSMUSG00000113220.1) lincRNA-TTS (ENSMUSG00000113220.1) 7621 ENSMUSG00000113220.1 ENSMUSG00000113220 ENSMUST00000221590 Gm35208 lincRNA Interval_144666 chr7 27408250 27409255 + 0 NA exon (ENSMUSG00000011751.16, exon 14 of 36) protein_coding-exon (ENSMUSG00000011751.16, exon 14 of 36) -24384 ENSMUSG00000108416.1 ENSMUSG00000108416 ENSMUST00000138087 Gm44924 processed_transcript Interval_163752 chr9 25267014 25267228 + 0 NA intron (ENSMUSG00000001833.17, intron 3 of 12) protein_coding-intron (ENSMUSG00000001833.17, intron 3 of 13) 8354 ENSMUSG00000111004.1 ENSMUSG00000111004 ENSMUST00000214972 Gm48272 processed_pseudogene Interval_116095 chr4 107635577 107636355 + 0 NA TTS (ENSMUSG00000034762.9) protein_coding-TTS (ENSMUSG00000034762.9) 47614 ENSMUSG00000028610.16 ENSMUSG00000028610 ENSMUST00000131508 Dmrtb1 protein_coding Interval_38053 chr12 75354577 75354841 + 0 NA intron (ENSMUSG00000046768.13, intron 1 of 3) protein_coding-intron (ENSMUSG00000046768.13, intron 1 of 4) 45828 ENSMUSG00000046768.13 ENSMUSG00000046768 ENSMUST00000172981 Rhoj protein_coding Interval_53381 chr14 56793385 56793714 + 0 NA exon (ENSMUSG00000040123.17, exon 8 of 8) protein_coding-exon (ENSMUSG00000040123.17, exon 8 of 8) -5862 ENSMUSG00000094250.1 ENSMUSG00000094250 ENSMUST00000178807 Gm4479 processed_pseudogene Interval_91273 chr2 37290262 37290631 + 0 NA Intergenic Intergenic 8395 ENSMUSG00000064626.1 ENSMUSG00000064626 ENSMUST00000082692 Gm22306 snRNA Interval_155652 chr8 35674974 35675197 + 0 NA intron (ENSMUSG00000070056.6, intron 3 of 3) protein_coding-intron (ENSMUSG00000070056.6, intron 2 of 2) 44864 ENSMUSG00000110335.1 ENSMUSG00000110335 ENSMUST00000209585 1700015I17Rik lincRNA Interval_169489 chr9 98349317 98350724 + 0 NA intron (ENSMUSG00000032456.13, intron 1 of 3) protein_coding-intron (ENSMUSG00000032456.13, intron 1 of 4) 48370 ENSMUSG00000101452.1 ENSMUSG00000101452 ENSMUST00000190473 Gm28530 processed_pseudogene Interval_25080 chr11 43732903 43733273 + 0 NA intron (ENSMUSG00000041278.10, intron 7 of 7) protein_coding-intron (ENSMUSG00000041278.10, intron 7 of 7) 14904 ENSMUSG00000041278.10 ENSMUSG00000041278 ENSMUST00000147984 Ttc1 protein_coding Interval_32794 chr11 110716227 110716495 + 0 NA Intergenic Intergenic 171854 ENSMUSG00000085985.1 ENSMUSG00000085985 ENSMUST00000144689 Gm11682 lincRNA Interval_97162 chr2 131892531 131892745 + 0 NA Intergenic Intergenic -11448 ENSMUSG00000081229.1 ENSMUSG00000081229 ENSMUST00000119759 Lamr1-ps1 processed_pseudogene Interval_57744 chr15 18203229 18203556 + 0 NA intron (ENSMUSG00000098150.2, intron 1 of 7) processed_transcript-intron (ENSMUSG00000098150.2, intron 1 of 7) 39511 ENSMUSG00000098222.2 ENSMUSG00000098222 ENSMUST00000182954 Gm8318 processed_pseudogene Interval_146295 chr7 45176065 45176456 + 0 NA TTS (ENSMUSG00000070570.5) protein_coding-TTS (ENSMUSG00000070570.5) 2957 ENSMUSG00000106470.1 ENSMUSG00000106470 ENSMUST00000197423 Mir7055 miRNA Interval_38614 chr12 80552967 80553891 + 0 NA intron (ENSMUSG00000021130.8, intron 2 of 15) protein_coding-intron (ENSMUSG00000021130.8, intron 1 of 14) -34513 ENSMUSG00000097801.1 ENSMUSG00000097801 ENSMUST00000181852 Gm26777 bidirectional_promoter_lncRNA Interval_67540 chr16 50462261 50462841 + 0 NA Intergenic Intergenic -30242 ENSMUSG00000022641.15 ENSMUSG00000022641 ENSMUST00000130210 Bbx protein_coding Interval_116406 chr4 111567373 111567908 + 0 NA TTS (ENSMUSG00000061298.14) protein_coding-TTS (ENSMUSG00000061298.14) 945 ENSMUSG00000061298.14 ENSMUSG00000061298 ENSMUST00000142460 Agbl4 protein_coding Interval_33592 chr11 117397701 117398680 + 0 NA Intergenic Intergenic -16199 ENSMUSG00000086588.1 ENSMUSG00000086588 ENSMUST00000124901 Gm11729 lincRNA Interval_151644 chr7 125638709 125639632 + 0 NA Intergenic Intergenic 29822 ENSMUSG00000032777.9 ENSMUSG00000032777 ENSMUST00000206127 Gtf3c1 protein_coding Interval_145957 chr7 42654746 42655464 + 0 NA Intergenic Intergenic 37637 ENSMUSG00000069727.5 ENSMUSG00000069727 ENSMUST00000206356 Zfp975 protein_coding Interval_76209 chr17 77267559 77267909 + 0 NA Intergenic Intergenic 95476 ENSMUSG00000117578.1 ENSMUSG00000117578 ENSMUST00000234215 Rpsa-ps8 processed_pseudogene Interval_7753 chr1 133442553 133443158 + 0 NA Intergenic Intergenic -18478 ENSMUSG00000070643.11 ENSMUSG00000070643 ENSMUST00000126530 Sox13 protein_coding Interval_153583 chr8 3526005 3526861 + 0 NA intron (ENSMUSG00000004565.15, intron 13 of 26) protein_coding-intron (ENSMUSG00000004565.15, intron 15 of 33) -10353 ENSMUSG00000004565.15 ENSMUSG00000004565 ENSMUST00000208691 Pnpla6 protein_coding Interval_64278 chr16 10169770 10170882 + 0 NA promoter-TSS (ENSMUSG00000039209.12) protein_coding-promoter-TSS (ENSMUSG00000039209.12) 100 ENSMUSG00000039209.12 ENSMUSG00000039209 ENSMUST00000044103 Rpl39l protein_coding Interval_49713 chr13 114167864 114168059 + 0 NA Intergenic Intergenic -16369 ENSMUSG00000114213.1 ENSMUSG00000114213 ENSMUST00000225044 A430090L17Rik antisense Interval_173725 chrX 103120255 103120636 + 0 NA Intergenic Intergenic 37442 ENSMUSG00000081567.1 ENSMUSG00000081567 ENSMUST00000118913 Gm14838 processed_pseudogene Interval_42455 chr13 13720944 13722159 + 0 NA intron (ENSMUSG00000019726.12, intron 5 of 10) protein_coding-intron (ENSMUSG00000019726.12, intron 39 of 52) 37460 ENSMUSG00000019726.12 ENSMUSG00000019726 ENSMUST00000221587 Lyst protein_coding Interval_68175 chr16 66837659 66837926 + 0 NA intron (ENSMUSG00000064115.13, intron 2 of 3) protein_coding-intron (ENSMUSG00000064115.13, intron 3 of 9) -54711 ENSMUSG00000045178.10 ENSMUSG00000045178 ENSMUST00000050665 4933411O13Rik antisense Interval_51809 chr14 32353346 32353823 + 0 NA Intergenic Intergenic 31565 ENSMUSG00000021913.8 ENSMUSG00000021913 ENSMUST00000228286 Ogdhl protein_coding Interval_69399 chr16 92696748 92699112 + 0 NA promoter-TSS (ENSMUSG00000022952.17) protein_coding-promoter-TSS (ENSMUSG00000022952.17) 85116 ENSMUSG00000097139.3 ENSMUSG00000097139 ENSMUST00000180989 Gm26626 antisense Interval_126353 chr5 86950381 86950587 + 0 NA Intergenic Intergenic 11230 ENSMUSG00000104798.1 ENSMUSG00000104798 ENSMUST00000198547 Gm20121 processed_pseudogene Interval_35646 chr12 26565378 26565586 + 0 NA Intergenic Intergenic -31777 ENSMUSG00000113524.1 ENSMUSG00000113524 ENSMUST00000223018 Gm47847 lincRNA Interval_161741 chr8 122481277 122481542 + 0 NA promoter-TSS (ENSMUSG00000049482.16) protein_coding-promoter-TSS (ENSMUSG00000049482.16) 64 ENSMUSG00000049482.16 ENSMUSG00000049482 ENSMUST00000212499 Ctu2 protein_coding Interval_34860 chr12 12783807 12784802 + 0 NA Intergenic Intergenic -3681 ENSMUSG00000091430.1 ENSMUSG00000091430 ENSMUST00000171380 Platr19 lincRNA Interval_54014 chr14 64455762 64455969 + 0 NA promoter-TSS (ENSMUSG00000054733.9) protein_coding-promoter-TSS (ENSMUSG00000054733.9) -38917 ENSMUSG00000054733.9 ENSMUSG00000054733 ENSMUST00000209513 Msra protein_coding Interval_14539 chr10 35142370 35143090 + 0 NA TTS (ENSMUSG00000111216.1) processed_pseudogene-TTS (ENSMUSG00000111216.1) 417 ENSMUSG00000111216.1 ENSMUSG00000111216 ENSMUST00000216575 Gm47044 processed_pseudogene Interval_6168 chr1 98889149 98889800 + 0 NA Intergenic Intergenic 124633 ENSMUSG00000099686.1 ENSMUSG00000099686 ENSMUST00000188607 Gm29460 processed_pseudogene Interval_11655 chr1 184024634 184025801 + 0 NA intron (ENSMUSG00000039384.8, intron 2 of 2) protein_coding-intron (ENSMUSG00000039384.8, intron 2 of 2) 9084 ENSMUSG00000044854.7 ENSMUSG00000044854 ENSMUST00000050306 1700056E22Rik protein_coding Interval_109085 chr3 135640972 135641168 + 0 NA intron (ENSMUSG00000028163.17, intron 5 of 24) protein_coding-intron (ENSMUSG00000028163.17, intron 6 of 24) 13496 ENSMUSG00000106149.1 ENSMUSG00000106149 ENSMUST00000196513 Gm43430 TEC Interval_154501 chr8 18726039 18726630 + 0 NA intron (ENSMUSG00000031465.6, intron 1 of 8) protein_coding-intron (ENSMUSG00000031465.6, intron 1 of 8) -26787 ENSMUSG00000031465.6 ENSMUSG00000031465 ENSMUST00000170200 Angpt2 protein_coding Interval_13702 chr10 21188780 21189422 + 0 NA promoter-TSS (ENSMUSG00000110967.1) lincRNA-promoter-TSS (ENSMUSG00000110967.1) 81 ENSMUSG00000110967.1 ENSMUSG00000110967 ENSMUST00000213692 Gm40608 lincRNA Interval_36256 chr12 40357118 40359611 + 0 NA intron (ENSMUSG00000055917.15, intron 5 of 12) protein_coding-intron (ENSMUSG00000055917.15, intron 4 of 11) -29386 ENSMUSG00000055917.15 ENSMUSG00000055917 ENSMUST00000221847 Zfp277 protein_coding Interval_60295 chr15 72568411 72569007 + 0 NA Intergenic Intergenic -19574 ENSMUSG00000116088.1 ENSMUSG00000116088 ENSMUST00000230426 Gm49460 antisense Interval_103681 chr3 51590192 51591243 + 0 NA Intergenic Intergenic 8411 ENSMUSG00000104075.1 ENSMUSG00000104075 ENSMUST00000193978 5430433H01Rik TEC Interval_10621 chr1 172275598 172276620 + 0 NA intron (ENSMUSG00000007097.14, intron 1 of 1) protein_coding-intron (ENSMUSG00000007097.14, intron 21 of 22) 369 ENSMUSG00000007097.14 ENSMUSG00000007097 ENSMUST00000137679 Atp1a2 protein_coding Interval_800 chr1 11457807 11458056 + 0 NA intron (ENSMUSG00000057715.13, intron 1 of 1) protein_coding-intron (ENSMUSG00000057715.13, intron 1 of 13) 41013 ENSMUSG00000103825.1 ENSMUSG00000103825 ENSMUST00000194502 Gm38178 TEC Interval_83108 chr18 81404435 81405845 + 0 NA Intergenic Intergenic 52759 ENSMUSG00000118227.1 ENSMUSG00000118227 ENSMUST00000236435 Gm30288 lincRNA Interval_132250 chr5 143608947 143609909 + 0 NA Intergenic Intergenic -13073 ENSMUSG00000018001.18 ENSMUSG00000018001 ENSMUST00000110727 Cyth3 protein_coding Interval_79540 chr18 33211272 33211759 + 0 NA intron (ENSMUSG00000024378.9, intron 1 of 4) protein_coding-intron (ENSMUSG00000024378.9, intron 1 of 5) 2306 ENSMUSG00000024378.9 ENSMUSG00000024378 ENSMUST00000141617 Stard4 protein_coding Interval_74216 chr17 47513241 47513773 + 0 NA intron (ENSMUSG00000034165.16, intron 1 of 6) protein_coding-intron (ENSMUSG00000034165.16, intron 1 of 6) -11235 ENSMUSG00000023980.7 ENSMUSG00000023980 ENSMUST00000233675 Taf8 protein_coding Interval_151848 chr7 127090889 127092336 + 0 NA intron (ENSMUSG00000045165.6, intron 1 of 1) protein_coding-intron (ENSMUSG00000045165.6, intron 1 of 1) 188 ENSMUSG00000045165.6 ENSMUSG00000045165 ENSMUST00000206102 AI467606 protein_coding Interval_81207 chr18 56466187 56467602 + 0 NA intron (ENSMUSG00000001700.10, intron 2 of 14) protein_coding-intron (ENSMUSG00000001700.10, intron 1 of 13) -2373 ENSMUSG00000001700.10 ENSMUSG00000001700 ENSMUST00000237716 Gramd3 protein_coding Interval_24290 chr11 32137825 32138808 + 0 NA Intergenic Intergenic -37088 ENSMUSG00000086386.1 ENSMUSG00000086386 ENSMUST00000145338 Gm12108 lincRNA Interval_39621 chr12 91621800 91622446 + 0 NA Intergenic Intergenic -4446 ENSMUSG00000113943.1 ENSMUSG00000113943 ENSMUST00000222304 Gm47804 lincRNA Interval_52313 chr14 44712077 44712836 + 0 NA Intergenic Intergenic -6005 ENSMUSG00000079265.10 ENSMUSG00000079265 ENSMUST00000227585 Gm8257 protein_coding Interval_86100 chr19 36636781 36637127 + 0 NA intron (ENSMUSG00000087579.7, intron 3 of 4) antisense-intron (ENSMUSG00000087579.7, intron 3 of 4) 21630 ENSMUSG00000087579.7 ENSMUSG00000087579 ENSMUST00000128603 Hectd2os antisense Interval_173653 chrX 101515736 101516128 + 0 NA Intergenic Intergenic -3053 ENSMUSG00000081674.1 ENSMUSG00000081674 ENSMUST00000120403 Gm6184 processed_pseudogene Interval_36623 chr12 51592787 51594438 + 0 NA exon (ENSMUSG00000020953.17, exon 2 of 12) protein_coding-exon (ENSMUSG00000020953.17, exon 2 of 12) 233 ENSMUSG00000020953.17 ENSMUSG00000020953 ENSMUST00000220173 Coch protein_coding Interval_82529 chr18 74970301 74971053 + 0 NA Intergenic Intergenic -9415 ENSMUSG00000053846.5 ENSMUSG00000053846 ENSMUST00000235783 Lipg protein_coding Interval_80344 chr18 39644355 39645324 + 0 NA intron (ENSMUSG00000118117.1, intron 2 of 2) lincRNA-intron (ENSMUSG00000117922.1, intron 2 of 2) 8433 ENSMUSG00000118117.1 ENSMUSG00000118117 ENSMUST00000237284 Gm30961 lincRNA Interval_140324 chr6 116502658 116503063 + 0 NA Intergenic Intergenic -10697 ENSMUSG00000053251.6 ENSMUSG00000053251 ENSMUST00000220134 Olfr212 protein_coding Interval_53865 chr14 62937480 62938196 + 0 NA intron (ENSMUSG00000014547.10, intron 6 of 11) protein_coding-intron (ENSMUSG00000014547.10, intron 6 of 11) -35952 ENSMUSG00000114403.1 ENSMUSG00000114403 ENSMUST00000225378 Gm21021 processed_pseudogene Interval_51467 chr14 27798402 27798696 + 0 NA promoter-TSS (ENSMUSG00000040640.11) protein_coding-promoter-TSS (ENSMUSG00000040640.11) 77668 ENSMUSG00000109849.1 ENSMUSG00000109849 ENSMUST00000211470 Gm45645 antisense Interval_171335 chr9 116485979 116486183 + 0 NA Intergenic Intergenic 154913 ENSMUSG00000110752.1 ENSMUSG00000110752 ENSMUST00000217456 D730003K21Rik lincRNA Interval_119695 chr4 139280390 139280923 + 0 NA TTS (ENSMUSG00000028745.18) protein_coding-TTS (ENSMUSG00000028745.18) 30009 ENSMUSG00000028744.15 ENSMUSG00000028744 ENSMUST00000141007 Pqlc2 protein_coding Interval_119182 chr4 136052725 136054157 + 0 NA promoter-TSS (ENSMUSG00000059291.15) protein_coding-promoter-TSS (ENSMUSG00000059291.15) -351 ENSMUSG00000059291.15 ENSMUSG00000059291 ENSMUST00000128733 Rpl11 protein_coding Interval_39162 chr12 85519188 85519457 + 0 NA Intergenic Intergenic -10276 ENSMUSG00000114163.1 ENSMUSG00000114163 ENSMUST00000220590 Gm32296 lincRNA Interval_81345 chr18 58654718 58655300 + 0 NA Intergenic Intergenic -4471 ENSMUSG00000024601.9 ENSMUSG00000024601 ENSMUST00000238139 Isoc1 protein_coding Interval_156813 chr8 60728458 60728694 + 0 NA Intergenic Intergenic 9285 ENSMUSG00000109992.1 ENSMUSG00000109992 ENSMUST00000211162 Gm45650 lincRNA Interval_135626 chr6 41761392 41762410 + 0 NA Intergenic Intergenic 13276 ENSMUSG00000045479.7 ENSMUSG00000045479 ENSMUST00000050412 Olfr459 protein_coding Interval_10035 chr1 165248348 165248563 + 0 NA Intergenic Intergenic -11942 ENSMUSG00000040843.10 ENSMUSG00000040843 ENSMUST00000156102 Tiprl protein_coding Interval_139088 chr6 94952099 94952678 + 0 NA TTS (ENSMUSG00000108187.1) lincRNA-TTS (ENSMUSG00000108187.1) 8554 ENSMUSG00000108187.1 ENSMUSG00000108187 ENSMUST00000203778 4930511E03Rik lincRNA Interval_99326 chr2 159056975 159057299 + 0 NA Intergenic Intergenic -12726 ENSMUSG00000104628.1 ENSMUSG00000104628 ENSMUST00000196974 Gm44319 miRNA Interval_130244 chr5 125165506 125166416 + 0 NA intron (ENSMUSG00000029478.16, intron 1 of 47) protein_coding-intron (ENSMUSG00000029478.16, intron 1 of 46) 79120 ENSMUSG00000106663.1 ENSMUSG00000106663 ENSMUST00000198978 Gm42839 antisense Interval_25486 chr11 49124012 49124803 + 0 NA exon (ENSMUSG00000040328.16, exon 2 of 5) protein_coding-intron (ENSMUSG00000040328.16, intron 4 of 5) -5737 ENSMUSG00000040328.16 ENSMUSG00000040328 ENSMUST00000239127 Olfr56 protein_coding Interval_54192 chr14 66121772 66124772 + 0 NA intron (ENSMUSG00000022040.8, intron 1 of 18) protein_coding-intron (ENSMUSG00000022040.8, intron 1 of 18) -11767 ENSMUSG00000022041.10 ENSMUSG00000022041 ENSMUST00000022620 Chrna2 protein_coding Interval_71723 chr17 25698538 25698933 + 0 NA promoter-TSS (ENSMUSG00000118136.1) lincRNA-promoter-TSS (ENSMUSG00000118136.1) 114 ENSMUSG00000117791.1 ENSMUSG00000117791 ENSMUST00000237100 4930541O19Rik lincRNA Interval_77858 chr18 4739777 4740409 + 0 NA Intergenic Intergenic -2983 ENSMUSG00000117585.1 ENSMUSG00000117585 ENSMUST00000234879 Gm5047 processed_pseudogene Interval_40584 chr12 105849577 105850650 + 0 NA Intergenic Intergenic -14149 ENSMUSG00000113537.1 ENSMUSG00000113537 ENSMUST00000221840 Gm48807 lincRNA Interval_150391 chr7 110102780 110104330 + 0 NA intron (ENSMUSG00000101585.6, intron 2 of 3) antisense-intron (ENSMUSG00000101585.6, intron 2 of 3) -16435 ENSMUSG00000109904.1 ENSMUSG00000109904 ENSMUST00000210940 Gm45819 TEC Interval_96636 chr2 126692485 126692821 + 0 NA Intergenic Intergenic -14675 ENSMUSG00000027363.15 ENSMUSG00000027363 ENSMUST00000110416 Usp8 protein_coding Interval_34673 chr12 8539133 8539842 + 0 NA promoter-TSS (ENSMUSG00000020600.13) protein_coding-promoter-TSS (ENSMUSG00000020600.13) 58 ENSMUSG00000020600.13 ENSMUSG00000020600 ENSMUST00000129465 Slc7a15 protein_coding Interval_16622 chr10 66440903 66441249 + 0 NA Intergenic Intergenic -42477 ENSMUSG00000077439.1 ENSMUSG00000077439 ENSMUST00000104251 Gm22594 snoRNA Interval_31343 chr11 100161260 100161599 + 0 NA Intergenic Intergenic -17730 ENSMUSG00000020911.14 ENSMUSG00000020911 ENSMUST00000125888 Krt19 protein_coding Interval_154044 chr8 12184080 12184818 + 0 NA Intergenic Intergenic -94370 ENSMUSG00000074473.1 ENSMUSG00000074473 ENSMUST00000098935 A230072I06Rik protein_coding Interval_120312 chr4 145365748 145366755 + 0 NA Intergenic Intergenic -24692 ENSMUSG00000082758.1 ENSMUSG00000082758 ENSMUST00000121756 Gm13024 processed_pseudogene Interval_34551 chr12 5043973 5044607 + 0 NA exon (ENSMUSG00000052812.5, exon 31 of 31) protein_coding-exon (ENSMUSG00000052812.5, exon 31 of 31) 23158 ENSMUSG00000112723.1 ENSMUSG00000112723 ENSMUST00000219035 Gm9110 processed_pseudogene Interval_117831 chr4 126467688 126469042 + 0 NA promoter-TSS (ENSMUSG00000041530.17) protein_coding-promoter-TSS (ENSMUSG00000041530.17) 56 ENSMUSG00000041530.17 ENSMUSG00000041530 ENSMUST00000149425 Ago1 protein_coding Interval_114760 chr4 84815902 84817096 + 0 NA Intergenic Intergenic -67966 ENSMUSG00000038070.15 ENSMUSG00000038070 ENSMUST00000107190 Cntln protein_coding Interval_96449 chr2 123132706 123133873 + 0 NA Intergenic Intergenic -140635 ENSMUSG00000084372.1 ENSMUSG00000084372 ENSMUST00000119363 Gm13988 processed_pseudogene Interval_26451 chr11 57942782 57943745 + 0 NA Intergenic Intergenic 5822 ENSMUSG00000083657.1 ENSMUSG00000083657 ENSMUST00000117266 Gm12245 processed_pseudogene Interval_168570 chr9 83651971 83653361 + 0 NA Intergenic Intergenic 34859 ENSMUSG00000111820.1 ENSMUSG00000111820 ENSMUST00000214393 Gm36120 lincRNA Interval_16207 chr10 61426353 61426852 + 0 NA Intergenic Intergenic 8630 ENSMUSG00000037171.6 ENSMUSG00000037171 ENSMUST00000049339 Nodal protein_coding Interval_7488 chr1 131806800 131807209 + 0 NA intron (ENSMUSG00000042251.12, intron 10 of 12) protein_coding-intron (ENSMUSG00000042251.12, intron 10 of 13) -5126 ENSMUSG00000042251.12 ENSMUSG00000042251 ENSMUST00000132450 Pm20d1 protein_coding Interval_128334 chr5 112595479 112595805 + 0 NA Intergenic Intergenic -5646 ENSMUSG00000097962.7 ENSMUSG00000097962 ENSMUST00000182949 1700034G24Rik lincRNA Interval_50019 chr13 119741490 119743011 + 0 NA intron (ENSMUSG00000095930.1, intron 1 of 3) protein_coding-intron (ENSMUSG00000095930.1, intron 1 of 3) -3856 ENSMUSG00000095930.1 ENSMUSG00000095930 ENSMUST00000178973 Nim1k protein_coding Interval_76629 chr17 82957550 82958161 + 0 NA TTS (ENSMUSG00000117472.1) processed_pseudogene-TTS (ENSMUSG00000117472.1) 1859 ENSMUSG00000117472.1 ENSMUSG00000117472 ENSMUST00000234284 Gm4601 processed_pseudogene Interval_53737 chr14 61316642 61317536 + 0 NA intron (ENSMUSG00000101505.1, intron 1 of 1) antisense-intron (ENSMUSG00000101505.1, intron 1 of 1) 7255 ENSMUSG00000043157.8 ENSMUSG00000043157 ENSMUST00000224727 Arl11 protein_coding Interval_65631 chr16 24412535 24412745 + 0 NA intron (ENSMUSG00000033306.15, intron 1 of 7) protein_coding-intron (ENSMUSG00000033306.15, intron 1 of 12) -6223 ENSMUSG00000087861.1 ENSMUSG00000087861 ENSMUST00000157236 Gm24440 snRNA Interval_86205 chr19 37795093 37796441 + 0 NA Intergenic Intergenic 11501 ENSMUSG00000117939.1 ENSMUSG00000117939 ENSMUST00000236017 Gm9067 processed_pseudogene Interval_78567 chr18 14782479 14784091 + 0 NA promoter-TSS (ENSMUSG00000054321.7) protein_coding-promoter-TSS (ENSMUSG00000054321.7) 40 ENSMUSG00000054321.7 ENSMUSG00000054321 ENSMUST00000169862 Taf4b protein_coding Interval_82468 chr18 74257993 74258364 + 0 NA Intergenic Intergenic -9997 ENSMUSG00000024561.11 ENSMUSG00000024561 ENSMUST00000237568 Mbd1 protein_coding Interval_72869 chr17 32809529 32810380 + 0 NA promoter-TSS (ENSMUSG00000097030.1) antisense-promoter-TSS (ENSMUSG00000097030.1) -112 ENSMUSG00000055202.11 ENSMUSG00000055202 ENSMUST00000234594 Zfp811 protein_coding Interval_36097 chr12 35674110 35676031 + 0 NA promoter-TSS (ENSMUSG00000113985.1) lincRNA-promoter-TSS (ENSMUSG00000113985.1) 11234 ENSMUSG00000113985.1 ENSMUSG00000113985 ENSMUST00000222153 9130015A21Rik lincRNA Interval_31228 chr11 99012277 99013891 + 0 NA intron (ENSMUSG00000020914.17, intron 10 of 35) protein_coding-intron (ENSMUSG00000020914.17, intron 10 of 35) 4068 ENSMUSG00000065262.1 ENSMUSG00000065262 ENSMUST00000083328 Gm23451 snoRNA Interval_115418 chr4 98785118 98787016 + 0 NA intron (ENSMUSG00000035407.8, intron 1 of 9) protein_coding-intron (ENSMUSG00000035407.8, intron 1 of 9) -7701 ENSMUSG00000085843.1 ENSMUSG00000085843 ENSMUST00000133455 Kank4os antisense Interval_152378 chr7 132586760 132587006 + 0 NA intron (ENSMUSG00000030849.18, intron 2 of 6) protein_coding-intron (ENSMUSG00000030849.18, intron 2 of 6) -10504 ENSMUSG00000087657.8 ENSMUSG00000087657 ENSMUST00000148931 Gm16764 antisense Interval_101601 chr3 7534855 7535743 + 0 NA intron (ENSMUSG00000043542.12, intron 7 of 7) protein_coding-intron (ENSMUSG00000043542.12, intron 7 of 8) 31813 ENSMUSG00000043542.12 ENSMUSG00000043542 ENSMUST00000192835 Zc2hc1a protein_coding Interval_143554 chr7 12749227 12750022 + 0 NA Intergenic Intergenic 6938 ENSMUSG00000098135.1 ENSMUSG00000098135 ENSMUST00000182237 Gm6946 processed_pseudogene Interval_26276 chr11 55601640 55601876 + 0 NA intron (ENSMUSG00000000263.15, intron 1 of 8) protein_coding-intron (ENSMUSG00000000263.15, intron 1 of 8) 5975 ENSMUSG00000000263.15 ENSMUSG00000000263 ENSMUST00000102716 Glra1 protein_coding Interval_92509 chr2 60217229 60217660 + 0 NA intron (ENSMUSG00000026977.17, intron 1 of 8) protein_coding-intron (ENSMUSG00000026977.17, intron 1 of 10) 7531 ENSMUSG00000026977.17 ENSMUSG00000026977 ENSMUST00000136367 Marchf7 protein_coding Interval_77684 chr17 94218842 94219135 + 0 NA Intergenic Intergenic -86717 ENSMUSG00000117543.1 ENSMUSG00000117543 ENSMUST00000235005 Gm50004 processed_pseudogene Interval_169025 chr9 90419347 90419548 + 0 NA Intergenic Intergenic 67452 ENSMUSG00000065881.1 ENSMUSG00000065881 ENSMUST00000083947 Gm22866 snRNA Interval_103061 chr3 34795328 34796641 + 0 NA Intergenic Intergenic 23909 ENSMUSG00000106519.1 ENSMUSG00000106519 ENSMUST00000197492 Gm38509 lincRNA Interval_105592 chr3 87970362 87972121 + 0 NA exon (ENSMUSG00000004891.16, exon 1 of 4) protein_coding-exon (ENSMUSG00000004891.16, exon 1 of 4) 112 ENSMUSG00000004891.16 ENSMUSG00000004891 ENSMUST00000160694 Nes protein_coding Interval_113007 chr4 46781188 46781704 + 0 NA intron (ENSMUSG00000039809.10, intron 7 of 18) protein_coding-intron (ENSMUSG00000039809.10, intron 7 of 18) 78456 ENSMUSG00000039809.10 ENSMUSG00000039809 ENSMUST00000206773 Gabbr2 protein_coding Interval_30842 chr11 96822427 96824643 + 0 NA promoter-TSS (ENSMUSG00000038615.17) protein_coding-promoter-TSS (ENSMUSG00000038615.17) 592 ENSMUSG00000038615.17 ENSMUSG00000038615 ENSMUST00000135836 Nfe2l1 protein_coding Interval_110032 chr3 152677870 152678278 + 0 NA intron (ENSMUSG00000097745.1, intron 2 of 3) antisense-intron (ENSMUSG00000097745.1, intron 2 of 3) 11161 ENSMUSG00000097745.1 ENSMUSG00000097745 ENSMUST00000181093 AI115009 antisense Interval_166025 chr9 55543912 55546822 + 0 NA intron (ENSMUSG00000032318.12, intron 4 of 4) protein_coding-intron (ENSMUSG00000032318.12, intron 5 of 5) -4820 ENSMUSG00000090270.1 ENSMUSG00000090270 ENSMUST00000166637 Gm17226 antisense Interval_106836 chr3 101224045 101224945 + 0 NA Intergenic Intergenic -8965 ENSMUSG00000083546.1 ENSMUSG00000083546 ENSMUST00000120257 Tpt1-ps1 processed_pseudogene Interval_53325 chr14 56177554 56178221 + 0 NA TTS (ENSMUSG00000114392.1) unprocessed_pseudogene-TTS (ENSMUSG00000114392.1) 2824 ENSMUSG00000114392.1 ENSMUSG00000114392 ENSMUST00000224626 Gm8961 unprocessed_pseudogene Interval_24932 chr11 41644940 41645693 + 0 NA Intergenic Intergenic 54194 ENSMUSG00000081847.1 ENSMUSG00000081847 ENSMUST00000117114 Gm12142 processed_pseudogene Interval_5192 chr1 86380713 86381812 + 0 NA Intergenic Intergenic -2986 ENSMUSG00000110510.1 ENSMUSG00000110510 ENSMUST00000212977 Gm45908 processed_pseudogene Interval_73837 chr17 44360846 44361097 + 0 NA Intergenic Intergenic 6932 ENSMUSG00000117106.1 ENSMUSG00000117106 ENSMUST00000233110 Gm49872 lincRNA Interval_114218 chr4 68661851 68662623 + 0 NA Intergenic Intergenic 179170 ENSMUSG00000028351.5 ENSMUSG00000028351 ENSMUST00000140572 Brinp1 protein_coding Interval_32016 chr11 104468705 104470029 + 0 NA promoter-TSS (ENSMUSG00000018412.16) protein_coding-promoter-TSS (ENSMUSG00000018412.16) -1376 ENSMUSG00000018412.16 ENSMUSG00000018412 ENSMUST00000134266 Kansl1 protein_coding Interval_165792 chr9 53144046 53144838 + 0 NA intron (ENSMUSG00000053289.8, intron 16 of 17) protein_coding-intron (ENSMUSG00000053289.8, intron 16 of 17) -19746 ENSMUSG00000111693.1 ENSMUSG00000111693 ENSMUST00000213563 Gm47986 processed_pseudogene Interval_6714 chr1 118949032 118949339 + 0 NA intron (ENSMUSG00000048402.14, intron 2 of 6) protein_coding-intron (ENSMUSG00000048402.14, intron 2 of 13) -5035 ENSMUSG00000098273.1 ENSMUSG00000098273 ENSMUST00000183982 Mir6346 miRNA Interval_34728 chr12 9000282 9000510 + 0 NA intron (ENSMUSG00000066643.12, intron 12 of 22) protein_coding-intron (ENSMUSG00000066643.12, intron 12 of 27) 26337 ENSMUSG00000066643.12 ENSMUSG00000066643 ENSMUST00000159735 Wdr35 protein_coding Interval_93453 chr2 73158274 73158676 + 0 NA intron (ENSMUSG00000027108.15, intron 3 of 9) protein_coding-intron (ENSMUSG00000027108.15, intron 4 of 10) -18136 ENSMUSG00000083976.1 ENSMUSG00000083976 ENSMUST00000117304 Gm13664 processed_pseudogene Interval_156626 chr8 55594478 55594845 + 0 NA Intergenic Intergenic 62370 ENSMUSG00000110025.1 ENSMUSG00000110025 ENSMUST00000210122 Gm20586 processed_pseudogene Interval_163284 chr9 20570684 20571307 + 0 NA Intergenic Intergenic -10537 ENSMUSG00000058192.16 ENSMUSG00000058192 ENSMUST00000060063 Zfp846 protein_coding Interval_54996 chr14 76739758 76740647 + 0 NA Intergenic Intergenic -19929 ENSMUSG00000115709.1 ENSMUSG00000115709 ENSMUST00000228541 4930431P22Rik lincRNA Interval_48480 chr13 99356591 99357223 + 0 NA intron (ENSMUSG00000041632.7, intron 2 of 5) protein_coding-intron (ENSMUSG00000041632.7, intron 2 of 10) 11363 ENSMUSG00000041632.7 ENSMUSG00000041632 ENSMUST00000225973 Mrps27 protein_coding Interval_52550 chr14 47421846 47422943 + 0 NA promoter-TSS (ENSMUSG00000115617.1) lincRNA-promoter-TSS (ENSMUSG00000115617.1) -23 ENSMUSG00000115617.1 ENSMUSG00000115617 ENSMUST00000226648 Gm48975 lincRNA Interval_8652 chr1 146316208 146316510 + 0 NA Intergenic Intergenic -104077 ENSMUSG00000090323.2 ENSMUSG00000090323 ENSMUST00000163646 Gm5263 processed_pseudogene Interval_94754 chr2 94018025 94018266 + 0 NA Intergenic Intergenic -7393 ENSMUSG00000040174.14 ENSMUSG00000040174 ENSMUST00000130289 Alkbh3 protein_coding Interval_121131 chr4 153320692 153320961 + 0 NA Intergenic Intergenic 102650 ENSMUSG00000087454.1 ENSMUSG00000087454 ENSMUST00000126141 Gm13174 lincRNA Interval_161784 chr8 122752157 122752554 + 0 NA promoter-TSS (ENSMUSG00000110523.1) lincRNA-promoter-TSS (ENSMUSG00000110523.1) -30 ENSMUSG00000110523.1 ENSMUSG00000110523 ENSMUST00000212334 C230057M02Rik lincRNA Interval_47462 chr13 84758235 84759163 + 0 NA Intergenic Intergenic -67758 ENSMUSG00000098081.1 ENSMUSG00000098081 ENSMUST00000182391 Gm26913 processed_pseudogene Interval_112090 chr4 34614525 34616276 + 0 NA promoter-TSS (ENSMUSG00000040044.11) protein_coding-promoter-TSS (ENSMUSG00000040044.11) 422 ENSMUSG00000028292.14 ENSMUSG00000028292 ENSMUST00000141519 Rars2 protein_coding Interval_21923 chr11 5227031 5227774 + 0 NA intron (ENSMUSG00000020393.16, intron 1 of 3) protein_coding-intron (ENSMUSG00000020393.16, intron 3 of 8) 11046 ENSMUSG00000020393.16 ENSMUSG00000020393 ENSMUST00000151978 Kremen1 protein_coding Interval_24266 chr11 31955732 31956410 + 0 NA Intergenic Intergenic -9521 ENSMUSG00000020299.6 ENSMUSG00000020299 ENSMUST00000102829 4930524B15Rik protein_coding Interval_96439 chr2 122753923 122754345 + 0 NA Intergenic Intergenic 15615 ENSMUSG00000005804.14 ENSMUSG00000005804 ENSMUST00000129690 Bloc1s6 protein_coding Interval_17063 chr10 70967779 70968033 + 0 NA intron (ENSMUSG00000014329.14, intron 3 of 20) protein_coding-intron (ENSMUSG00000014329.14, intron 3 of 21) -19417 ENSMUSG00000014329.14 ENSMUSG00000014329 ENSMUST00000144740 Bicc1 protein_coding Interval_134150 chr6 21984963 21986963 + 0 NA promoter-TSS (ENSMUSG00000062980.15) protein_coding-promoter-TSS (ENSMUSG00000062980.15) 36278 ENSMUSG00000029670.12 ENSMUSG00000029670 ENSMUST00000141689 Ing3 protein_coding Interval_12183 chr1 190664438 190664839 + 0 NA Intergenic Intergenic 70312 ENSMUSG00000103963.1 ENSMUSG00000103963 ENSMUST00000191893 Gm30932 lincRNA Interval_63184 chr15 99612439 99612985 + 0 NA Intergenic Intergenic 11312 ENSMUSG00000043144.6 ENSMUSG00000043144 ENSMUST00000023754 Aqp6 protein_coding Interval_6003 chr1 93837349 93837854 + 0 NA intron (ENSMUSG00000073609.9, intron 2 of 2) protein_coding-intron (ENSMUSG00000073609.9, intron 6 of 9) 11316 ENSMUSG00000073609.9 ENSMUSG00000073609 ENSMUST00000188532 D2hgdh protein_coding Interval_165133 chr9 44733073 44736078 + 0 NA intron (ENSMUSG00000048537.16, intron 1 of 21) protein_coding-intron (ENSMUSG00000048537.16, intron 1 of 21) 2372 ENSMUSG00000064658.1 ENSMUSG00000064658 ENSMUST00000082724 Gm24166 snoRNA Interval_147581 chr7 68527116 68527430 + 0 NA Intergenic Intergenic 71581 ENSMUSG00000109375.1 ENSMUSG00000109375 ENSMUST00000208980 Gm44887 processed_pseudogene Interval_170833 chr9 111047415 111047852 + 0 NA Intergenic Intergenic 5560 ENSMUSG00000104654.1 ENSMUSG00000104654 ENSMUST00000197851 Gm43814 TEC Interval_78895 chr18 21235457 21236319 + 0 NA intron (ENSMUSG00000042680.8, intron 2 of 4) protein_coding-intron (ENSMUSG00000042680.8, intron 2 of 5) 64235 ENSMUSG00000042680.8 ENSMUSG00000042680 ENSMUST00000234115 Garem1 protein_coding Interval_4002 chr1 66104316 66105371 + 0 NA Intergenic Intergenic 41878 ENSMUSG00000083289.1 ENSMUSG00000083289 ENSMUST00000118496 Gm8812 processed_pseudogene Interval_160800 chr8 112410836 112412349 + 0 NA Intergenic Intergenic 157983 ENSMUSG00000098075.1 ENSMUSG00000098075 ENSMUST00000182027 Gm26994 antisense Interval_120401 chr4 148380722 148381021 + 0 NA Intergenic Intergenic -21411 ENSMUSG00000086326.1 ENSMUSG00000086326 ENSMUST00000138802 Gm13200 lincRNA Interval_19480 chr10 100015427 100016695 + 0 NA exon (ENSMUSG00000019966.18, exon 1 of 4) protein_coding-exon (ENSMUSG00000019966.18, exon 1 of 4) 27440 ENSMUSG00000112299.1 ENSMUSG00000112299 ENSMUST00000219489 Gm17870 processed_pseudogene Interval_134187 chr6 22446644 22446950 + 0 NA Intergenic Intergenic -102884 ENSMUSG00000029672.16 ENSMUSG00000029672 ENSMUST00000168965 Fam3c protein_coding Interval_74827 chr17 56761729 56762404 + 0 NA Intergenic Intergenic -2718 ENSMUSG00000007603.9 ENSMUSG00000007603 ENSMUST00000232684 Dus3l protein_coding Interval_83424 chr18 85175802 85176946 + 0 NA Intergenic Intergenic 104538 ENSMUSG00000118198.1 ENSMUSG00000118198 ENSMUST00000237500 Gm50370 lincRNA Interval_55295 chr14 80999052 80999377 + 0 NA Intergenic Intergenic 24921 ENSMUSG00000115297.1 ENSMUSG00000115297 ENSMUST00000227800 Gm49045 processed_pseudogene Interval_30932 chr11 97272955 97274054 + 0 NA intron (ENSMUSG00000001441.13, intron 1 of 21) protein_coding-intron (ENSMUSG00000001441.13, intron 1 of 22) -6624 ENSMUSG00000086680.2 ENSMUSG00000086680 ENSMUST00000133160 Gm11592 antisense Interval_19843 chr10 110195624 110195902 + 0 NA intron (ENSMUSG00000020181.18, intron 3 of 40) protein_coding-intron (ENSMUSG00000020181.18, intron 3 of 4) -55594 ENSMUSG00000112595.1 ENSMUSG00000112595 ENSMUST00000218767 Gm47340 processed_pseudogene Interval_18501 chr10 86769531 86770662 + 0 NA intron (ENSMUSG00000112743.1, intron 1 of 13) protein_coding-intron (ENSMUSG00000044937.15, intron 14 of 15) 6124 ENSMUSG00000112743.1 ENSMUSG00000112743 ENSMUST00000218802 Gm49358 protein_coding Interval_17828 chr10 80294988 80296318 + 0 NA promoter-TSS (ENSMUSG00000020135.13) protein_coding-promoter-TSS (ENSMUSG00000020135.13) 3200 ENSMUSG00000063457.14 ENSMUSG00000063457 ENSMUST00000062674 Rps15 protein_coding Interval_145978 chr7 42814875 42816572 + 0 NA Intergenic Intergenic -22198 ENSMUSG00000091926.3 ENSMUSG00000091926 ENSMUST00000169130 Vmn2r62 protein_coding Interval_9588 chr1 159833857 159835634 + 0 NA intron (ENSMUSG00000015829.13, intron 1 of 1) protein_coding-intron (ENSMUSG00000015829.13, intron 1 of 21) 96981 ENSMUSG00000103719.1 ENSMUSG00000103719 ENSMUST00000195328 Gm38039 antisense Interval_135357 chr6 38590545 38591221 + 0 NA intron (ENSMUSG00000029823.16, intron 5 of 8) protein_coding-intron (ENSMUSG00000029823.16, intron 4 of 9) 39549 ENSMUSG00000029823.16 ENSMUSG00000029823 ENSMUST00000160430 Luc7l2 protein_coding Interval_158406 chr8 83559693 83560167 + 0 NA Intergenic Intergenic -6828 ENSMUSG00000033938.5 ENSMUSG00000033938 ENSMUST00000127162 Ndufb7 protein_coding Interval_16947 chr10 70066543 70066959 + 0 NA Intergenic Intergenic -108260 ENSMUSG00000048701.13 ENSMUSG00000048701 ENSMUST00000135607 Ccdc6 protein_coding Interval_169650 chr9 99707751 99707938 + 0 NA promoter-TSS (ENSMUSG00000089655.1) antisense-promoter-TSS (ENSMUSG00000089655.1) -555 ENSMUSG00000089655.1 ENSMUSG00000089655 ENSMUST00000161981 Gm16004 antisense Interval_117487 chr4 124092960 124093175 + 0 NA Intergenic Intergenic 166833 ENSMUSG00000082515.1 ENSMUSG00000082515 ENSMUST00000118389 Gm12902 processed_pseudogene Interval_170015 chr9 103651722 103652842 + 0 NA intron (ENSMUSG00000042757.16, intron 2 of 3) protein_coding-intron (ENSMUSG00000042757.16, intron 1 of 4) -52118 ENSMUSG00000102441.1 ENSMUSG00000102441 ENSMUST00000195052 Gm38032 TEC Interval_30958 chr11 97427724 97428855 + 0 NA intron (ENSMUSG00000049807.16, intron 1 of 23) protein_coding-intron (ENSMUSG00000049807.16, intron 1 of 23) -7996 ENSMUSG00000049807.16 ENSMUSG00000049807 ENSMUST00000093940 Arhgap23 protein_coding Interval_19915 chr10 111188891 111189226 + 0 NA intron (ENSMUSG00000020189.15, intron 1 of 5) protein_coding-intron (ENSMUSG00000020189.15, intron 1 of 22) 9106 ENSMUSG00000112642.1 ENSMUSG00000112642 ENSMUST00000219788 Gm17849 processed_pseudogene Interval_107029 chr3 103057864 103059063 + 0 NA promoter-TSS (ENSMUSG00000027852.14) protein_coding-promoter-TSS (ENSMUSG00000027852.14) 115 ENSMUSG00000027852.14 ENSMUSG00000027852 ENSMUST00000199776 Nras protein_coding Interval_172655 chrX 40833278 40833561 + 0 NA Intergenic Intergenic 94692 ENSMUSG00000084287.1 ENSMUSG00000084287 ENSMUST00000118073 Gm14576 processed_pseudogene Interval_33776 chr11 118436313 118436518 + 0 NA intron (ENSMUSG00000017446.14, intron 1 of 3) protein_coding-intron (ENSMUSG00000017446.14, intron 1 of 3) -7056 ENSMUSG00000017446.14 ENSMUSG00000017446 ENSMUST00000133558 C1qtnf1 protein_coding Interval_127719 chr5 107032765 107033589 + 0 NA Intergenic Intergenic -15659 ENSMUSG00000106554.1 ENSMUSG00000106554 ENSMUST00000199486 Gm33474 lincRNA Interval_79375 chr18 31424001 31424314 + 0 NA Intergenic Intergenic -16161 ENSMUSG00000096934.1 ENSMUSG00000096934 ENSMUST00000181067 Gm26658 antisense Interval_171874 chr9 121928327 121929445 + 0 NA Intergenic Intergenic -5194 ENSMUSG00000111141.1 ENSMUSG00000111141 ENSMUST00000216970 Gm47115 unprocessed_pseudogene Interval_58364 chr15 33614155 33614972 + 0 NA intron (ENSMUSG00000115779.1, intron 5 of 5) antisense-intron (ENSMUSG00000115779.1, intron 5 of 5) -24827 ENSMUSG00000088062.1 ENSMUSG00000088062 ENSMUST00000157437 Gm24476 rRNA Interval_112895 chr4 45867136 45867745 + 0 NA intron (ENSMUSG00000028327.14, intron 7 of 18) protein_coding-intron (ENSMUSG00000028327.14, intron 6 of 17) -6771 ENSMUSG00000028327.14 ENSMUSG00000028327 ENSMUST00000165478 Stra6l protein_coding Interval_107203 chr3 104576830 104576998 + 0 NA Intergenic Intergenic 24325 ENSMUSG00000084653.1 ENSMUSG00000084653 ENSMUST00000122704 Gm26091 snRNA Interval_61919 chr15 85246753 85247492 + 0 NA intron (ENSMUSG00000006369.14, intron 14 of 16) protein_coding-intron (ENSMUSG00000006369.14, intron 14 of 16) -16332 ENSMUSG00000006369.14 ENSMUSG00000006369 ENSMUST00000160798 Fbln1 protein_coding Interval_135095 chr6 35338860 35339286 + 0 NA Intergenic Intergenic 8227 ENSMUSG00000107341.1 ENSMUSG00000107341 ENSMUST00000201560 1700065J11Rik lincRNA Interval_82007 chr18 67115962 67116527 + 0 NA intron (ENSMUSG00000024524.17, intron 1 of 5) protein_coding-intron (ENSMUSG00000024524.17, intron 1 of 11) -6488 ENSMUSG00000117982.1 ENSMUSG00000117982 ENSMUST00000236854 Gm50170 TEC Interval_109581 chr3 144610435 144611640 + 0 NA Intergenic Intergenic 14927 ENSMUSG00000105045.1 ENSMUSG00000105045 ENSMUST00000198343 Rpl9-ps8 processed_pseudogene Interval_82712 chr18 76127141 76128106 + 0 NA intron (ENSMUSG00000044646.15, intron 1 of 2) protein_coding-intron (ENSMUSG00000044646.15, intron 3 of 4) -29152 ENSMUSG00000117797.1 ENSMUSG00000117797 ENSMUST00000236092 2900057B20Rik antisense Interval_56937 chr14 123661136 123661572 + 0 NA promoter-TSS (ENSMUSG00000032925.16) protein_coding-promoter-TSS (ENSMUSG00000032925.16) 1229 ENSMUSG00000032925.16 ENSMUSG00000032925 ENSMUST00000132026 Itgbl1 protein_coding Interval_147946 chr7 75789808 75790856 + 0 NA Intergenic Intergenic 6300 ENSMUSG00000097116.1 ENSMUSG00000097116 ENSMUST00000180744 Gm26729 processed_pseudogene Interval_115632 chr4 101496055 101497713 + 0 NA intron (ENSMUSG00000028528.17, intron 1 of 11) protein_coding-intron (ENSMUSG00000028528.17, intron 1 of 19) 253 ENSMUSG00000028528.17 ENSMUSG00000028528 ENSMUST00000106933 Dnajc6 protein_coding Interval_60419 chr15 73637248 73637673 + 0 NA intron (ENSMUSG00000079020.9, intron 1 of 1) protein_coding-intron (ENSMUSG00000079020.9, intron 1 of 1) -8392 ENSMUSG00000099958.1 ENSMUSG00000099958 ENSMUST00000188278 1700010B13Rik processed_transcript Interval_48260 chr13 97498212 97498626 + 0 NA Intergenic Intergenic -12785 ENSMUSG00000114926.1 ENSMUSG00000114926 ENSMUST00000225874 Gm2379 lincRNA Interval_117701 chr4 125635162 125635532 + 0 NA intron (ENSMUSG00000001985.9, intron 3 of 15) protein_coding-intron (ENSMUSG00000001985.9, intron 3 of 15) 130598 ENSMUSG00000094403.1 ENSMUSG00000094403 ENSMUST00000102081 Mir692-2 miRNA Interval_20178 chr10 115439305 115440031 + 0 NA Intergenic Intergenic 11161 ENSMUSG00000034163.10 ENSMUSG00000034163 ENSMUST00000141246 Zfc3h1 protein_coding Interval_114202 chr4 67126134 67127190 + 0 NA Intergenic Intergenic -38817 ENSMUSG00000081435.1 ENSMUSG00000081435 ENSMUST00000122195 Gm11403 processed_pseudogene Interval_39160 chr12 85512029 85512257 + 0 NA Intergenic Intergenic -17455 ENSMUSG00000114163.1 ENSMUSG00000114163 ENSMUST00000220590 Gm32296 lincRNA Interval_72920 chr17 33492815 33493949 + 0 NA Intergenic Intergenic -24696 ENSMUSG00000117495.2 ENSMUSG00000117495 ENSMUST00000234517 Gm4125 protein_coding Interval_86051 chr19 36008980 36009186 + 0 NA intron (ENSMUSG00000024798.15, intron 1 of 3) protein_coding-intron (ENSMUSG00000024798.15, intron 1 of 3) 48424 ENSMUSG00000024798.15 ENSMUSG00000024798 ENSMUST00000099505 Htr7 protein_coding Interval_7910 chr1 134533815 134536238 + 0 NA Intergenic Intergenic 11924 ENSMUSG00000046367.10 ENSMUSG00000046367 ENSMUST00000185836 Mgat4e protein_coding Interval_149196 chr7 96198199 96199090 + 0 NA intron (ENSMUSG00000048078.16, intron 1 of 32) protein_coding-intron (ENSMUSG00000048078.16, intron 1 of 32) 4892 ENSMUSG00000108528.1 ENSMUSG00000108528 ENSMUST00000205708 Gm8319 processed_pseudogene Interval_164972 chr9 43527430 43527775 + 0 NA Intergenic Intergenic -11770 ENSMUSG00000111110.1 ENSMUSG00000111110 ENSMUST00000216439 Gm36855 lincRNA Interval_45197 chr13 53147166 53148159 + 0 NA intron (ENSMUSG00000021464.14, intron 1 of 8) protein_coding-intron (ENSMUSG00000021464.14, intron 1 of 8) 118744 ENSMUSG00000112952.1 ENSMUSG00000112952 ENSMUST00000222184 Gm48336 lincRNA Interval_11704 chr1 184793044 184793830 + 0 NA intron (ENSMUSG00000026621.13, intron 6 of 6) protein_coding-intron (ENSMUSG00000026621.13, intron 6 of 6) 15416 ENSMUSG00000026621.13 ENSMUSG00000026621 ENSMUST00000189492 Mtarc1 protein_coding Interval_16324 chr10 62230641 62231661 + 0 NA promoter-TSS (ENSMUSG00000037031.10) protein_coding-promoter-TSS (ENSMUSG00000037031.10) -21287 ENSMUSG00000020081.5 ENSMUSG00000020081 ENSMUST00000020278 Tacr2 protein_coding Interval_2894 chr1 48368277 48368909 + 0 NA Intergenic Intergenic -53742 ENSMUSG00000096973.1 ENSMUSG00000096973 ENSMUST00000181607 Gm5974 processed_pseudogene Interval_16519 chr10 63323006 63323816 + 0 NA intron (ENSMUSG00000020063.16, intron 2 of 2) protein_coding-intron (ENSMUSG00000020063.16, intron 7 of 8) 15621 ENSMUSG00000020063.16 ENSMUSG00000020063 ENSMUST00000131371 Sirt1 protein_coding Interval_34449 chr12 4237540 4238085 + 0 NA promoter-TSS (ENSMUSG00000112829.1) processed_pseudogene-promoter-TSS (ENSMUSG00000112829.1) 100 ENSMUSG00000112829.1 ENSMUSG00000112829 ENSMUST00000219209 Gm29696 processed_pseudogene Interval_124684 chr5 53252160 53252898 + 0 NA Intergenic Intergenic -14661 ENSMUSG00000061461.11 ENSMUSG00000061461 ENSMUST00000204089 Smim20 protein_coding Interval_7772 chr1 133571296 133571721 + 0 NA Intergenic Intergenic -29715 ENSMUSG00000064814.1 ENSMUSG00000064814 ENSMUST00000082880 Gm23939 snoRNA Interval_28442 chr11 75913194 75914349 + 0 NA intron (ENSMUSG00000020847.15, intron 1 of 5) protein_coding-intron (ENSMUSG00000020847.15, intron 1 of 4) 24658 ENSMUSG00000020847.15 ENSMUSG00000020847 ENSMUST00000152035 Rph3al protein_coding Interval_94110 chr2 84362823 84363289 + 0 NA intron (ENSMUSG00000059588.13, intron 5 of 12) protein_coding-intron (ENSMUSG00000059588.13, intron 9 of 15) -44745 ENSMUSG00000084198.1 ENSMUSG00000084198 ENSMUST00000119708 Gm13711 unprocessed_pseudogene Interval_134489 chr6 29096522 29096766 + 0 NA Intergenic Intergenic 16962 ENSMUSG00000064436.1 ENSMUSG00000064436 ENSMUST00000082502 Gm25589 snRNA Interval_1329 chr1 20726067 20726263 + 0 NA Intergenic Intergenic -4740 ENSMUSG00000025929.4 ENSMUSG00000025929 ENSMUST00000027061 Il17a protein_coding Interval_81081 chr18 53705923 53706349 + 0 NA TTS (ENSMUSG00000118362.1) lincRNA-TTS (ENSMUSG00000118362.1) 38427 ENSMUSG00000048799.8 ENSMUSG00000048799 ENSMUST00000235928 Cep120 protein_coding Interval_119508 chr4 138013877 138014239 + 0 NA intron (ENSMUSG00000028760.16, intron 2 of 8) protein_coding-intron (ENSMUSG00000028760.16, intron 2 of 9) 20545 ENSMUSG00000028760.16 ENSMUSG00000028760 ENSMUST00000148074 Eif4g3 protein_coding Interval_97070 chr2 130950075 130951398 + 0 NA intron (ENSMUSG00000027312.14, intron 6 of 23) protein_coding-intron (ENSMUSG00000027312.14, intron 6 of 28) -37248 ENSMUSG00000083953.1 ENSMUSG00000083953 ENSMUST00000121009 Gm14049 processed_pseudogene Interval_44000 chr13 38940061 38940718 + 0 NA intron (ENSMUSG00000021432.15, intron 4 of 6) protein_coding-intron (ENSMUSG00000021432.15, intron 5 of 9) 20124 ENSMUSG00000021432.15 ENSMUSG00000021432 ENSMUST00000224854 Slc35b3 protein_coding Interval_148832 chr7 89159698 89160071 + 0 NA promoter-TSS (ENSMUSG00000039428.11) protein_coding-promoter-TSS (ENSMUSG00000039428.11) -14387 ENSMUSG00000039428.11 ENSMUSG00000039428 ENSMUST00000137723 Tmem135 protein_coding Interval_138144 chr6 85469007 85469236 + 0 NA TTS (ENSMUSG00000030007.8) protein_coding-TTS (ENSMUSG00000030007.8) 7350 ENSMUSG00000030007.8 ENSMUSG00000030007 ENSMUST00000204612 Cct7 protein_coding Interval_42517 chr13 14401071 14401271 + 0 NA intron (ENSMUSG00000021301.9, intron 1 of 2) protein_coding-intron (ENSMUSG00000021301.9, intron 2 of 28) -21598 ENSMUSG00000113981.1 ENSMUSG00000113981 ENSMUST00000222578 Gm47011 TEC Interval_149783 chr7 101443475 101443960 + 0 NA intron (ENSMUSG00000110195.1, intron 1 of 30) protein_coding-intron (ENSMUSG00000030653.17, intron 1 of 31) 22008 ENSMUSG00000110195.1 ENSMUSG00000110195 ENSMUST00000209315 Pde2a protein_coding Interval_5135 chr1 85929317 85929885 + 0 NA exon (ENSMUSG00000026224.11, exon 1 of 1) protein_coding-exon (ENSMUSG00000026224.11, exon 1 of 1) 715 ENSMUSG00000026224.11 ENSMUSG00000026224 ENSMUST00000188949 4933407L21Rik protein_coding Interval_139814 chr6 109019122 109019322 + 0 NA Intergenic Intergenic -106463 ENSMUSG00000107501.1 ENSMUSG00000107501 ENSMUST00000203862 Gm29781 processed_pseudogene Interval_25938 chr11 52753471 52754159 + 0 NA Intergenic Intergenic -10819 ENSMUSG00000036264.9 ENSMUSG00000036264 ENSMUST00000036796 Fstl4 protein_coding Interval_113366 chr4 53853072 53853910 + 0 NA intron (ENSMUSG00000028420.13, intron 3 of 3) protein_coding-intron (ENSMUSG00000028420.13, intron 4 of 5) -7161 ENSMUSG00000065887.1 ENSMUSG00000065887 ENSMUST00000083953 n-R5s185 rRNA Interval_60444 chr15 73786905 73788356 + 0 NA exon (ENSMUSG00000072487.11, exon 11 of 11) protein_coding-exon (ENSMUSG00000072487.11, exon 11 of 11) 22266 ENSMUSG00000083380.1 ENSMUSG00000083380 ENSMUST00000120938 Ndufb4c processed_pseudogene Interval_101052 chr2 174643724 174645249 + 0 NA exon (ENSMUSG00000050600.5, exon 1 of 5) protein_coding-exon (ENSMUSG00000050600.5, exon 1 of 5) 952 ENSMUSG00000050600.5 ENSMUSG00000050600 ENSMUST00000059452 Zfp831 protein_coding Interval_26347 chr11 56951678 56951898 + 0 NA Intergenic Intergenic -224730 ENSMUSG00000020524.16 ENSMUSG00000020524 ENSMUST00000173531 Gria1 protein_coding Interval_29343 chr11 83339759 83340684 + 0 NA intron (ENSMUSG00000035152.14, intron 9 of 20) protein_coding-intron (ENSMUSG00000035152.14, intron 10 of 21) 26780 ENSMUSG00000077217.1 ENSMUSG00000077217 ENSMUST00000104029 Gm23951 snoRNA Interval_112631 chr4 43702765 43704138 + 0 NA Intergenic Intergenic -2644 ENSMUSG00000050215.6 ENSMUSG00000050215 ENSMUST00000055545 Olfr70 protein_coding Interval_149729 chr7 100974029 100975586 + 0 NA promoter-TSS (ENSMUSG00000048779.5) protein_coding-promoter-TSS (ENSMUSG00000048779.5) -158 ENSMUSG00000048779.5 ENSMUSG00000048779 ENSMUST00000208653 P2ry6 protein_coding Interval_39813 chr12 98682046 98682681 + 0 NA intron (ENSMUSG00000021009.15, intron 2 of 5) protein_coding-intron (ENSMUSG00000021009.15, intron 15 of 18) 1387 ENSMUSG00000021009.15 ENSMUSG00000021009 ENSMUST00000222071 Ptpn21 protein_coding Interval_136138 chr6 51432559 51434915 + 0 NA intron (ENSMUSG00000029832.16, intron 1 of 2) protein_coding-intron (ENSMUSG00000029832.16, intron 1 of 3) 988 ENSMUSG00000029832.16 ENSMUSG00000029832 ENSMUST00000160133 Nfe2l3 protein_coding Interval_20421 chr10 117454555 117456129 + 0 NA Intergenic Intergenic -7849 ENSMUSG00000112344.1 ENSMUSG00000112344 ENSMUST00000220189 Gm32141 lincRNA Interval_79895 chr18 35791378 35791605 + 0 NA exon (ENSMUSG00000091896.8, exon 1 of 6) protein_coding-exon (ENSMUSG00000091896.8, exon 1 of 6) -8351 ENSMUSG00000117841.1 ENSMUSG00000117841 ENSMUST00000235919 Gm50371 processed_transcript Interval_149894 chr7 102330326 102330696 + 0 NA intron (ENSMUSG00000030987.5, intron 1 of 12) protein_coding-intron (ENSMUSG00000030987.5, intron 1 of 11) 47826 ENSMUSG00000110175.1 ENSMUSG00000110175 ENSMUST00000211316 Gm18255 processed_pseudogene Interval_125018 chr5 63910100 63910797 + 0 NA exon (ENSMUSG00000047881.14, exon 8 of 8) protein_coding-exon (ENSMUSG00000047881.14, exon 8 of 8) -13453 ENSMUSG00000087552.2 ENSMUSG00000087552 ENSMUST00000153089 Gm15819 antisense Interval_7562 chr1 132233384 132233842 + 0 NA intron (ENSMUSG00000079330.9, intron 4 of 4) protein_coding-intron (ENSMUSG00000079330.9, intron 3 of 3) -3846 ENSMUSG00000066936.4 ENSMUSG00000066936 ENSMUST00000086544 Gm10188 protein_coding Interval_139058 chr6 94669367 94670168 + 0 NA intron (ENSMUSG00000030029.14, intron 1 of 19) protein_coding-intron (ENSMUSG00000030029.14, intron 1 of 19) 30391 ENSMUSG00000030029.14 ENSMUSG00000030029 ENSMUST00000124165 Lrig1 protein_coding Interval_11437 chr1 181935205 181935742 + 0 NA exon (ENSMUSG00000022995.16, exon 1 of 1) protein_coding-exon (ENSMUSG00000022995.16, exon 1 of 1) 17902 ENSMUSG00000103722.1 ENSMUSG00000103722 ENSMUST00000194331 2700078F05Rik TEC Interval_169559 chr9 99131088 99132305 + 0 NA intron (ENSMUSG00000032462.14, intron 1 of 3) protein_coding-intron (ENSMUSG00000032462.14, intron 1 of 23) 8229 ENSMUSG00000032462.14 ENSMUSG00000032462 ENSMUST00000124723 Pik3cb protein_coding Interval_47565 chr13 88821025 88824089 + 0 NA intron (ENSMUSG00000034488.14, intron 1 of 5) protein_coding-intron (ENSMUSG00000034488.14, intron 1 of 9) 1069 ENSMUSG00000034488.14 ENSMUSG00000034488 ENSMUST00000043111 Edil3 protein_coding Interval_135338 chr6 38433349 38434996 + 0 NA promoter-TSS (ENSMUSG00000038538.17) protein_coding-promoter-TSS (ENSMUSG00000038538.17) -6361 ENSMUSG00000038538.17 ENSMUSG00000038538 ENSMUST00000159447 Ubn2 protein_coding Interval_11681 chr1 184628261 184629807 + 0 NA intron (ENSMUSG00000103308.5, intron 1 of 2) lincRNA-intron (ENSMUSG00000103308.5, intron 1 of 2) 439 ENSMUSG00000103308.5 ENSMUSG00000103308 ENSMUST00000192129 Gm37800 lincRNA Interval_33732 chr11 118155003 118155242 + 0 NA intron (ENSMUSG00000017132.17, intron 12 of 13) protein_coding-intron (ENSMUSG00000017132.17, intron 12 of 13) 25913 ENSMUSG00000088119.1 ENSMUSG00000088119 ENSMUST00000157494 Gm24060 snRNA Interval_43258 chr13 27794576 27794978 + 0 NA Intergenic Intergenic -6877 ENSMUSG00000022886.5 ENSMUSG00000022886 ENSMUST00000023602 Prl2a1 protein_coding Interval_74839 chr17 56813952 56814993 + 0 NA intron (ENSMUSG00000024206.15, intron 1 of 4) protein_coding-intron (ENSMUSG00000024206.15, intron 1 of 17) 16467 ENSMUSG00000024206.15 ENSMUSG00000024206 ENSMUST00000233643 Rfx2 protein_coding Interval_166119 chr9 56856834 56857552 + 0 NA intron (ENSMUSG00000045620.7, intron 1 of 5) protein_coding-intron (ENSMUSG00000045620.7, intron 1 of 5) 7486 ENSMUSG00000045620.7 ENSMUSG00000045620 ENSMUST00000215694 Odf3l1 protein_coding Interval_136156 chr6 51555150 51555770 + 0 NA intron (ENSMUSG00000038301.15, intron 1 of 6) protein_coding-intron (ENSMUSG00000038301.15, intron 1 of 6) 10937 ENSMUSG00000038301.15 ENSMUSG00000038301 ENSMUST00000149024 Snx10 protein_coding Interval_53349 chr14 56515026 56515376 + 0 NA intron (ENSMUSG00000000365.9, intron 33 of 36) protein_coding-intron (ENSMUSG00000000365.9, intron 33 of 36) 5918 ENSMUSG00000000365.9 ENSMUSG00000000365 ENSMUST00000225737 Rnf17 protein_coding Interval_129457 chr5 120322107 120323311 + 0 NA Intergenic Intergenic 23259 ENSMUSG00000107141.1 ENSMUSG00000107141 ENSMUST00000200789 Gm42654 lincRNA Interval_131823 chr5 140123135 140124325 + 0 NA intron (ENSMUSG00000029554.15, intron 2 of 6) protein_coding-intron (ENSMUSG00000029554.15, intron 13 of 17) 22531 ENSMUSG00000087606.1 ENSMUSG00000087606 ENSMUST00000128520 Gm16121 antisense Interval_67203 chr16 44392071 44392703 + 0 NA Intergenic Intergenic -2409 ENSMUSG00000071550.14 ENSMUSG00000071550 ENSMUST00000127303 Cfap44 protein_coding Interval_67126 chr16 43664021 43665133 + 0 NA promoter-TSS (ENSMUSG00000071552.5) protein_coding-promoter-TSS (ENSMUSG00000071552.5) -431 ENSMUSG00000071552.5 ENSMUSG00000071552 ENSMUST00000096065 Tigit protein_coding Interval_67865 chr16 58392673 58394659 + 0 NA Intergenic Intergenic 14610 ENSMUSG00000086827.1 ENSMUSG00000086827 ENSMUST00000133622 4930461C15Rik lincRNA Interval_119818 chr4 140182232 140182464 + 0 NA intron (ENSMUSG00000040972.8, intron 1 of 9) protein_coding-intron (ENSMUSG00000040972.8, intron 1 of 9) 39475 ENSMUSG00000086164.1 ENSMUSG00000086164 ENSMUST00000137283 Gm13029 antisense Interval_36163 chr12 37268880 37269144 + 0 NA intron (ENSMUSG00000050103.18, intron 3 of 12) protein_coding-intron (ENSMUSG00000050103.18, intron 3 of 12) 160472 ENSMUSG00000036144.6 ENSMUSG00000036144 ENSMUST00000041183 Meox2 protein_coding Interval_38690 chr12 81039234 81039732 + 0 NA intron (ENSMUSG00000021136.13, intron 1 of 11) protein_coding-intron (ENSMUSG00000021136.13, intron 1 of 12) 12655 ENSMUSG00000021136.13 ENSMUSG00000021136 ENSMUST00000129362 Smoc1 protein_coding Interval_62731 chr15 96520595 96521183 + 0 NA Intergenic Intergenic 22987 ENSMUSG00000116160.1 ENSMUSG00000116160 ENSMUST00000229356 Gm41392 lincRNA Interval_13405 chr10 17827187 17828150 + 0 NA intron (ENSMUSG00000039891.6, intron 4 of 9) protein_coding-intron (ENSMUSG00000039891.6, intron 4 of 9) 10289 ENSMUSG00000093537.1 ENSMUSG00000093537 ENSMUST00000175829 Gm7584 processed_pseudogene Interval_140254 chr6 115823423 115824497 + 0 NA promoter-TSS (ENSMUSG00000107429.2) antisense-promoter-TSS (ENSMUSG00000107429.2) -12171 ENSMUSG00000107429.2 ENSMUSG00000107429 ENSMUST00000203620 Gm44206 antisense Interval_8699 chr1 149067571 149068020 + 0 NA Intergenic Intergenic 30211 ENSMUSG00000100917.1 ENSMUSG00000100917 ENSMUST00000185777 Gm18751 processed_pseudogene Interval_168823 chr9 87648481 87649188 + 0 NA Intergenic Intergenic -80451 ENSMUSG00000103710.1 ENSMUSG00000103710 ENSMUST00000192660 D030062O11Rik TEC Interval_1483 chr1 24005206 24005903 + 0 NA promoter-TSS (ENSMUSG00000026154.4) protein_coding-promoter-TSS (ENSMUSG00000026154.4) 47 ENSMUSG00000102495.1 ENSMUSG00000102495 ENSMUST00000195143 Gm26524 TEC Interval_101501 chr3 3102949 3103752 + 0 NA Intergenic Intergenic -75593 ENSMUSG00000098307.1 ENSMUSG00000098307 ENSMUST00000184213 Gm27460 miRNA Interval_80226 chr18 38386169 38386860 + 0 NA Intergenic Intergenic -25976 ENSMUSG00000118140.1 ENSMUSG00000118140 ENSMUST00000235767 Gm4949 processed_pseudogene Interval_100280 chr2 168137108 168137722 + 0 NA intron (ENSMUSG00000118526.2, intron 3 of 7) unitary_pseudogene-intron (ENSMUSG00000118526.2, intron 3 of 7) 16118 ENSMUSG00000085267.1 ENSMUSG00000085267 ENSMUST00000142445 Gm14235 lincRNA Interval_4151 chr1 70861871 70862500 + 0 NA intron (ENSMUSG00000045648.15, intron 5 of 5) protein_coding-intron (ENSMUSG00000045648.15, intron 3 of 3) 136262 ENSMUSG00000045648.15 ENSMUSG00000045648 ENSMUST00000162182 Vwc2l protein_coding Interval_22042 chr11 5955231 5956220 + 0 NA promoter-TSS (ENSMUSG00000002741.9) protein_coding-promoter-TSS (ENSMUSG00000002741.9) -3579 ENSMUSG00000002741.9 ENSMUSG00000002741 ENSMUST00000143834 Ykt6 protein_coding Interval_135133 chr6 36305920 36306157 + 0 NA intron (ENSMUSG00000073154.10, intron 2 of 3) lincRNA-intron (ENSMUSG00000073154.10, intron 2 of 4) -31682 ENSMUSG00000073154.10 ENSMUSG00000073154 ENSMUST00000159965 9330158H04Rik lincRNA Interval_29171 chr11 80988805 80989253 + 0 NA intron (ENSMUSG00000020704.13, intron 1 of 9) protein_coding-intron (ENSMUSG00000020704.13, intron 1 of 9) -57765 ENSMUSG00000082027.1 ENSMUSG00000082027 ENSMUST00000119111 Gm11416 processed_pseudogene Interval_97034 chr2 130677788 130677995 + 0 NA intron (ENSMUSG00000074797.11, intron 5 of 6) protein_coding-intron (ENSMUSG00000074797.11, intron 6 of 7) 10086 ENSMUSG00000074797.11 ENSMUSG00000074797 ENSMUST00000126714 Itpa protein_coding Interval_74424 chr17 50215827 50216756 + 0 NA intron (ENSMUSG00000104256.2, intron 1 of 4) lincRNA-intron (ENSMUSG00000104256.2, intron 1 of 4) -2085 ENSMUSG00000117138.1 ENSMUSG00000117138 ENSMUST00000232865 Gm9191 processed_pseudogene Interval_160906 chr8 114877276 114877790 + 0 NA intron (ENSMUSG00000004637.15, intron 8 of 8) protein_coding-intron (ENSMUSG00000004637.15, intron 8 of 8) 165366 ENSMUSG00000004637.15 ENSMUSG00000004637 ENSMUST00000162052 Wwox protein_coding Interval_24215 chr11 31573132 31573719 + 0 NA Intergenic Intergenic 98302 ENSMUSG00000044502.16 ENSMUSG00000044502 ENSMUST00000109415 Bod1 protein_coding Interval_18642 chr10 88765480 88766472 + 0 NA promoter-TSS (ENSMUSG00000004356.8) protein_coding-promoter-TSS (ENSMUSG00000004356.8) -34875 ENSMUSG00000069540.4 ENSMUSG00000069540 ENSMUST00000092231 Gm4925 transcribed_processed_pseudogene Interval_150136 chr7 107236444 107237505 + 0 NA Intergenic Intergenic -6048 ENSMUSG00000057215.6 ENSMUSG00000057215 ENSMUST00000133824 Platr28 lincRNA Interval_28694 chr11 77784325 77786825 + 0 NA exon (ENSMUSG00000069804.2, exon 1 of 1) protein_coding-exon (ENSMUSG00000069804.2, exon 1 of 1) 2172 ENSMUSG00000069804.2 ENSMUSG00000069804 ENSMUST00000092883 Gm10277 protein_coding Interval_73895 chr17 45364472 45364931 + 0 NA Intergenic Intergenic 68840 ENSMUSG00000023932.9 ENSMUSG00000023932 ENSMUST00000232910 Cdc5l protein_coding Interval_102206 chr3 19455158 19455364 + 0 NA Intergenic Intergenic -75986 ENSMUSG00000027606.12 ENSMUSG00000027606 ENSMUST00000165693 Dnajc5b protein_coding Interval_14164 chr10 28232083 28233068 + 0 NA intron (ENSMUSG00000019889.10, intron 2 of 2) protein_coding-intron (ENSMUSG00000019889.10, intron 2 of 31) -18454 ENSMUSG00000076377.1 ENSMUSG00000076377 ENSMUST00000102422 Gm22370 miRNA Interval_29509 chr11 84533944 84534252 + 0 NA intron (ENSMUSG00000087211.7, intron 2 of 4) lincRNA-intron (ENSMUSG00000087211.7, intron 2 of 4) 8438 ENSMUSG00000087211.7 ENSMUSG00000087211 ENSMUST00000128121 Lhx1os lincRNA Interval_123933 chr5 36712455 36713665 + 0 NA Intergenic Intergenic -17090 ENSMUSG00000029190.19 ENSMUSG00000029190 ENSMUST00000202510 D5Ertd579e protein_coding Interval_103921 chr3 55001629 55002610 + 0 NA Intergenic Intergenic 52918 ENSMUSG00000027793.6 ENSMUSG00000027793 ENSMUST00000199352 Ccna1 protein_coding Interval_103365 chr3 40480873 40481666 + 0 NA Intergenic Intergenic 28505 ENSMUSG00000037884.6 ENSMUSG00000037884 ENSMUST00000202778 1700017G19Rik lincRNA Interval_112734 chr4 44493184 44493442 + 0 NA Intergenic Intergenic -80718 ENSMUSG00000077587.1 ENSMUSG00000077587 ENSMUST00000104399 Gm24376 snoRNA Interval_77983 chr18 6434087 6435701 + 0 NA Intergenic Intergenic 7000 ENSMUSG00000024240.13 ENSMUSG00000024240 ENSMUST00000050542 Epc1 protein_coding Interval_74481 chr17 51704245 51704506 + 0 NA Intergenic Intergenic 44309 ENSMUSG00000102973.1 ENSMUSG00000102973 ENSMUST00000194215 E430014B02Rik TEC Interval_15713 chr10 54154088 54154331 + 0 NA Intergenic Intergenic -57525 ENSMUSG00000112013.1 ENSMUSG00000112013 ENSMUST00000220047 Gm47967 processed_pseudogene Interval_49649 chr13 113800017 113800221 + 0 NA intron (ENSMUSG00000042348.10, intron 1 of 3) protein_coding-intron (ENSMUSG00000042348.10, intron 1 of 4) 5526 ENSMUSG00000042348.10 ENSMUSG00000042348 ENSMUST00000224068 Arl15 protein_coding Interval_114254 chr4 70182336 70182582 + 0 NA Intergenic Intergenic 66914 ENSMUSG00000080902.1 ENSMUSG00000080902 ENSMUST00000120944 Ywhaq-ps3 transcribed_processed_pseudogene Interval_156136 chr8 45035103 45035731 + 0 NA intron (ENSMUSG00000070047.14, intron 16 of 28) protein_coding-intron (ENSMUSG00000070047.14, intron 15 of 25) -13032 ENSMUSG00000097491.1 ENSMUSG00000097491 ENSMUST00000180753 Gm2366 antisense Interval_39844 chr12 98980763 98981605 + 0 NA intron (ENSMUSG00000021013.16, intron 5 of 5) protein_coding-intron (ENSMUSG00000021013.16, intron 14 of 14) 11825 ENSMUSG00000114021.1 ENSMUSG00000114021 ENSMUST00000221939 Gm47109 lincRNA Interval_13600 chr10 20131032 20131407 + 0 NA intron (ENSMUSG00000071369.11, intron 24 of 28) protein_coding-intron (ENSMUSG00000071369.11, intron 25 of 29) 6418 ENSMUSG00000071369.11 ENSMUSG00000071369 ENSMUST00000156369 Map3k5 protein_coding Interval_78083 chr18 7815312 7815547 + 0 NA Intergenic Intergenic -19748 ENSMUSG00000064822.1 ENSMUSG00000064822 ENSMUST00000082888 Gm24292 snRNA Interval_126400 chr5 87982704 87983554 + 0 NA intron (ENSMUSG00000100704.1, intron 2 of 4) protein_coding-intron (ENSMUSG00000100704.1, intron 2 of 4) 3690 ENSMUSG00000007907.4 ENSMUSG00000007907 ENSMUST00000008051 Cabs1 protein_coding Interval_110488 chr3 159494822 159496037 + 0 NA promoter-TSS (ENSMUSG00000028175.15) protein_coding-promoter-TSS (ENSMUSG00000028175.15) -4 ENSMUSG00000028175.15 ENSMUSG00000028175 ENSMUST00000106041 Depdc1a protein_coding Interval_100057 chr2 166833971 166834224 + 0 NA intron (ENSMUSG00000074582.10, intron 1 of 5) protein_coding-intron (ENSMUSG00000074582.10, intron 3 of 38) 6440 ENSMUSG00000074582.10 ENSMUSG00000074582 ENSMUST00000144847 Arfgef2 protein_coding Interval_14009 chr10 25432444 25433802 + 0 NA intron (ENSMUSG00000019978.16, intron 1 of 1) protein_coding-intron (ENSMUSG00000019978.16, intron 1 of 19) -16938 ENSMUSG00000112445.1 ENSMUSG00000112445 ENSMUST00000219193 Gm47830 processed_pseudogene Interval_8456 chr1 139520140 139520426 + 0 NA intron (ENSMUSG00000026368.6, intron 10 of 11) protein_coding-intron (ENSMUSG00000026368.6, intron 10 of 11) 3889 ENSMUSG00000026368.6 ENSMUSG00000026368 ENSMUST00000141842 F13b protein_coding Interval_94516 chr2 91852669 91853041 + 0 NA intron (ENSMUSG00000040506.16, intron 11 of 17) protein_coding-intron (ENSMUSG00000040506.16, intron 10 of 16) 68073 ENSMUSG00000075036.1 ENSMUSG00000075036 ENSMUST00000099710 Gm10805 pseudogene Interval_107750 chr3 113083583 113084523 + 0 NA Intergenic Intergenic -27428 ENSMUSG00000105665.1 ENSMUSG00000105665 ENSMUST00000199904 Gm38395 processed_pseudogene Interval_68440 chr16 76680318 76680664 + 0 NA promoter-TSS (ENSMUSG00000108903.1) lincRNA-promoter-TSS (ENSMUSG00000108903.1) -22 ENSMUSG00000108903.1 ENSMUSG00000108903 ENSMUST00000208702 Gm45029 lincRNA Interval_61637 chr15 83082702 83083020 + 0 NA Intergenic Intergenic -17402 ENSMUSG00000058586.12 ENSMUSG00000058586 ENSMUST00000169461 Serhl protein_coding Interval_13550 chr10 19412844 19414754 + 0 NA Intergenic Intergenic 57266 ENSMUSG00000045591.6 ENSMUSG00000045591 ENSMUST00000053225 Olig3 protein_coding Interval_96982 chr2 130246511 130247303 + 0 NA intron (ENSMUSG00000060332.9, intron 13 of 18) protein_coding-intron (ENSMUSG00000060332.9, intron 14 of 19) -28599 ENSMUSG00000080610.1 ENSMUSG00000080610 ENSMUST00000116960 Snord110 snoRNA Interval_58529 chr15 35692834 35693160 + 0 NA intron (ENSMUSG00000037646.10, intron 33 of 61) protein_coding-intron (ENSMUSG00000037646.10, intron 33 of 61) -31950 ENSMUSG00000077890.1 ENSMUSG00000077890 ENSMUST00000104698 Mir875 miRNA Interval_130454 chr5 127751745 127751990 + 0 NA Intergenic Intergenic 119605 ENSMUSG00000049971.17 ENSMUSG00000049971 ENSMUST00000134529 Glt1d1 protein_coding Interval_94717 chr2 93658833 93659911 + 0 NA intron (ENSMUSG00000040310.12, intron 1 of 2) protein_coding-intron (ENSMUSG00000040310.12, intron 1 of 3) 16984 ENSMUSG00000040310.12 ENSMUSG00000040310 ENSMUST00000111254 Alx4 protein_coding Interval_35017 chr12 16694254 16695823 + 0 NA intron (ENSMUSG00000036523.16, intron 24 of 34) protein_coding-intron (ENSMUSG00000036523.16, intron 22 of 32) 22798 ENSMUSG00000114049.1 ENSMUSG00000114049 ENSMUST00000223113 Gm48140 antisense Interval_76546 chr17 80938037 80939035 + 0 NA exon (ENSMUSG00000071040.2, exon 1 of 1) processed_pseudogene-exon (ENSMUSG00000071040.2, exon 1 of 1) 178 ENSMUSG00000071040.2 ENSMUSG00000071040 ENSMUST00000095195 Gm9386 processed_pseudogene Interval_31689 chr11 102265690 102268462 + 0 NA Intergenic Intergenic -1667 ENSMUSG00000034768.4 ENSMUSG00000034768 ENSMUST00000036467 Asb16 protein_coding Interval_143432 chr7 6759829 6760977 + 0 NA intron (ENSMUSG00000051527.11, intron 2 of 7) protein_coding-intron (ENSMUSG00000051527.11, intron 2 of 7) 7360 ENSMUSG00000109416.1 ENSMUSG00000109416 ENSMUST00000207613 Gm44863 TEC Interval_139893 chr6 112479547 112480403 + 0 NA intron (ENSMUSG00000049112.9, intron 1 of 1) protein_coding-intron (ENSMUSG00000049112.9, intron 1 of 1) 8419 ENSMUSG00000049112.9 ENSMUSG00000049112 ENSMUST00000204027 Oxtr protein_coding Interval_108121 chr3 121643201 121643708 + 0 NA promoter-TSS (ENSMUSG00000044522.8) lincRNA-promoter-TSS (ENSMUSG00000044522.8) -87 ENSMUSG00000044522.8 ENSMUSG00000044522 ENSMUST00000198402 A730020M07Rik lincRNA Interval_31178 chr11 98721767 98722036 + 0 NA intron (ENSMUSG00000017210.14, intron 3 of 3) protein_coding-intron (ENSMUSG00000017210.14, intron 3 of 25) -10812 ENSMUSG00000088169.1 ENSMUSG00000088169 ENSMUST00000157544 Gm22059 snoRNA Interval_125638 chr5 72960241 72960419 + 0 NA intron (ENSMUSG00000036087.18, intron 6 of 7) protein_coding-intron (ENSMUSG00000036087.18, intron 6 of 8) 10934 ENSMUSG00000088268.1 ENSMUSG00000088268 ENSMUST00000157643 Gm24776 snRNA Interval_38571 chr12 80183307 80183782 + 0 NA TTS (ENSMUSG00000015143.15) protein_coding-TTS (ENSMUSG00000015143.15) 7884 ENSMUSG00000112830.1 ENSMUSG00000112830 ENSMUST00000220316 Gm47765 processed_transcript Interval_105660 chr3 88439302 88441261 + 0 NA TTS (ENSMUSG00000098655.1) miRNA-TTS (ENSMUSG00000098655.1) 670 ENSMUSG00000098655.1 ENSMUSG00000098655 ENSMUST00000183768 Mir7011 miRNA Interval_120731 chr4 150315348 150315865 + 0 NA promoter-TSS (ENSMUSG00000085787.3) processed_pseudogene-promoter-TSS (ENSMUSG00000085787.3) -170 ENSMUSG00000085787.3 ENSMUSG00000085787 ENSMUST00000136346 Gm13092 processed_pseudogene Interval_112876 chr4 45729020 45730259 + 0 NA Intergenic Intergenic 14470 ENSMUSG00000085305.1 ENSMUSG00000085305 ENSMUST00000124989 Gm12410 lincRNA Interval_104847 chr3 75879279 75879714 + 0 NA promoter-TSS (ENSMUSG00000034109.15) protein_coding-promoter-TSS (ENSMUSG00000034109.15) -72628 ENSMUSG00000103024.1 ENSMUSG00000103024 ENSMUST00000193507 Gm37685 TEC Interval_11373 chr1 181338982 181339296 + 0 NA Intergenic Intergenic -14287 ENSMUSG00000026514.14 ENSMUSG00000026514 ENSMUST00000209607 Cnih3 protein_coding Interval_6111 chr1 97279374 97279661 + 0 NA intron (ENSMUSG00000100484.1, intron 9 of 12) unprocessed_pseudogene-intron (ENSMUSG00000100484.1, intron 9 of 12) -66958 ENSMUSG00000101348.6 ENSMUSG00000101348 ENSMUST00000187538 Gm7135 transcribed_unprocessed_pseudogene Interval_79379 chr18 31446771 31447578 + 0 NA exon (ENSMUSG00000024261.6, exon 1 of 4) protein_coding-exon (ENSMUSG00000024261.6, exon 1 of 4) 232 ENSMUSG00000024261.6 ENSMUSG00000024261 ENSMUST00000025110 Syt4 protein_coding Interval_173008 chrX 62197525 62197806 + 0 NA Intergenic Intergenic -10453 ENSMUSG00000082168.1 ENSMUSG00000082168 ENSMUST00000120342 Gm14656 processed_pseudogene Interval_18035 chr10 81482279 81482991 + 0 NA promoter-TSS (ENSMUSG00000034818.17) protein_coding-promoter-TSS (ENSMUSG00000034818.17) 69 ENSMUSG00000034818.17 ENSMUSG00000034818 ENSMUST00000147524 Celf5 protein_coding Interval_106020 chr3 90702711 90703122 + 0 NA Intergenic Intergenic 6698 ENSMUSG00000105819.1 ENSMUSG00000105819 ENSMUST00000200512 Gm42579 processed_pseudogene Interval_157782 chr8 73135427 73136348 + 0 NA intron (ENSMUSG00000004383.18, intron 3 of 15) protein_coding-intron (ENSMUSG00000004383.18, intron 2 of 14) 39371 ENSMUSG00000089447.1 ENSMUSG00000089447 ENSMUST00000158822 Gm22532 snoRNA Interval_70095 chr17 5286810 5287167 + 0 NA intron (ENSMUSG00000069729.14, intron 7 of 19) protein_coding-intron (ENSMUSG00000069729.14, intron 7 of 18) -101775 ENSMUSG00000101133.1 ENSMUSG00000101133 ENSMUST00000190732 Gm29050 antisense Interval_145300 chr7 31490466 31490670 + 0 NA Intergenic Intergenic 10876 ENSMUSG00000100754.1 ENSMUSG00000100754 ENSMUST00000190227 Scgb2b5-ps unprocessed_pseudogene Interval_172271 chrX 12151580 12152075 + 0 NA intron (ENSMUSG00000040363.15, intron 1 of 4) protein_coding-intron (ENSMUSG00000040363.15, intron 1 of 13) 8519 ENSMUSG00000040363.15 ENSMUSG00000040363 ENSMUST00000209776 Bcor protein_coding Interval_19364 chr10 97989072 97989319 + 0 NA Intergenic Intergenic -22105 ENSMUSG00000074776.4 ENSMUSG00000074776 ENSMUST00000099324 Gm10754 lincRNA Interval_173506 chrX 96539281 96539709 + 0 NA intron (ENSMUSG00000031209.14, intron 16 of 21) protein_coding-intron (ENSMUSG00000031209.14, intron 16 of 21) -9134 ENSMUSG00000081182.2 ENSMUSG00000081182 ENSMUST00000121528 Gm14935 processed_pseudogene Interval_25777 chr11 51646846 51647705 + 0 NA intron (ENSMUSG00000001053.15, intron 1 of 4) protein_coding-intron (ENSMUSG00000001053.15, intron 1 of 4) 3562 ENSMUSG00000001053.15 ENSMUSG00000001053 ENSMUST00000142721 N4bp3 protein_coding Interval_170531 chr9 108546019 108546256 + 0 NA TTS (ENSMUSG00000103970.1) TEC-TTS (ENSMUSG00000103970.1) 1923 ENSMUSG00000103970.1 ENSMUSG00000103970 ENSMUST00000192908 Gm37678 TEC Interval_95904 chr2 118241496 118242614 + 0 NA intron (ENSMUSG00000027344.14, intron 5 of 11) protein_coding-intron (ENSMUSG00000027344.14, intron 5 of 10) 6727 ENSMUSG00000093368.1 ENSMUSG00000093368 ENSMUST00000175627 Gm22800 miRNA Interval_143628 chr7 13355691 13355930 + 0 NA intron (ENSMUSG00000033847.15, intron 14 of 16) protein_coding-intron (ENSMUSG00000033847.15, intron 13 of 15) -5301 ENSMUSG00000108293.1 ENSMUSG00000108293 ENSMUST00000204668 Pla2g4c-ps unprocessed_pseudogene Interval_10541 chr1 171635452 171635861 + 0 NA TTS (ENSMUSG00000038179.13) protein_coding-TTS (ENSMUSG00000038179.13) 777 ENSMUSG00000103219.1 ENSMUSG00000103219 ENSMUST00000192524 Gm37787 antisense Interval_49534 chr13 112782607 112782789 + 0 NA Intergenic Intergenic 17850 ENSMUSG00000114286.1 ENSMUSG00000114286 ENSMUST00000225832 Gm47850 lincRNA Interval_33039 chr11 113810874 113812324 + 0 NA intron (ENSMUSG00000041592.16, intron 4 of 5) protein_coding-intron (ENSMUSG00000041592.16, intron 36 of 44) -1176 ENSMUSG00000041592.16 ENSMUSG00000041592 ENSMUST00000144301 Sdk2 protein_coding Interval_113971 chr4 62165729 62166288 + 0 NA Intergenic Intergenic -15145 ENSMUSG00000066153.2 ENSMUSG00000066153 ENSMUST00000077719 Mup21 protein_coding Interval_90677 chr2 31825567 31825810 + 0 NA intron (ENSMUSG00000026841.7, intron 4 of 6) protein_coding-intron (ENSMUSG00000026841.7, intron 4 of 6) -15108 ENSMUSG00000043102.2 ENSMUSG00000043102 ENSMUST00000057407 Qrfp protein_coding Interval_144790 chr7 28277200 28278454 + 0 NA promoter-TSS (ENSMUSG00000070705.3) protein_coding-promoter-TSS (ENSMUSG00000070705.3) 88 ENSMUSG00000070705.3 ENSMUSG00000070705 ENSMUST00000094651 Eid2b protein_coding Interval_131241 chr5 135956781 135958030 + 0 NA Intergenic Intergenic 10515 ENSMUSG00000029699.13 ENSMUSG00000029699 ENSMUST00000154181 Ssc4d protein_coding Interval_13339 chr10 15726763 15728169 + 0 NA intron (ENSMUSG00000112800.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000112800.1, intron 1 of 1) 11356 ENSMUSG00000111963.1 ENSMUSG00000111963 ENSMUST00000218861 Gm32283 lincRNA Interval_36005 chr12 33236224 33237313 + 0 NA intron (ENSMUSG00000020564.17, intron 3 of 12) protein_coding-intron (ENSMUSG00000020564.17, intron 2 of 2) -7914 ENSMUSG00000079143.3 ENSMUSG00000079143 ENSMUST00000155877 Atxn7l1os1 antisense Interval_139274 chr6 97783392 97783885 + 0 NA Intergenic Intergenic -6874 ENSMUSG00000089464.1 ENSMUSG00000089464 ENSMUST00000158839 Gm23703 snoRNA Interval_43041 chr13 23439877 23440369 + 0 NA Intergenic Intergenic 5812 ENSMUSG00000113440.1 ENSMUSG00000113440 ENSMUST00000221461 Gm46404 lincRNA Interval_163803 chr9 26406413 26409012 + 0 NA Intergenic Intergenic -21410 ENSMUSG00000111124.1 ENSMUSG00000111124 ENSMUST00000214282 Gm48373 processed_pseudogene Interval_11718 chr1 184862293 184864978 + 0 NA Intergenic Intergenic -5223 ENSMUSG00000088562.2 ENSMUSG00000088562 ENSMUST00000157937 Gm23780 misc_RNA Interval_73712 chr17 42918288 42919499 + 0 NA Intergenic Intergenic -87863 ENSMUSG00000061665.7 ENSMUSG00000061665 ENSMUST00000233626 Cd2ap protein_coding Interval_119828 chr4 140245551 140246830 + 0 NA intron (ENSMUSG00000040972.8, intron 1 of 9) protein_coding-intron (ENSMUSG00000040972.8, intron 1 of 9) 594 ENSMUSG00000040972.8 ENSMUSG00000040972 ENSMUST00000039331 Igsf21 protein_coding Interval_7694 chr1 133094732 133095915 + 0 NA intron (ENSMUSG00000026447.17, intron 23 of 32) protein_coding-intron (ENSMUSG00000026447.17, intron 23 of 32) 26744 ENSMUSG00000026447.17 ENSMUSG00000026447 ENSMUST00000239467 Pik3c2b protein_coding Interval_21132 chr10 126794145 126794511 + 0 NA promoter-TSS (ENSMUSG00000112832.1) lincRNA-promoter-TSS (ENSMUSG00000112832.1) -618 ENSMUSG00000112832.1 ENSMUSG00000112832 ENSMUST00000218870 4930484H19Rik lincRNA Interval_23473 chr11 22821639 22821927 + 0 NA intron (ENSMUSG00000051650.11, intron 1 of 5) protein_coding-intron (ENSMUSG00000051650.11, intron 1 of 5) -17516 ENSMUSG00000092455.1 ENSMUSG00000092455 ENSMUST00000174690 Gm20456 processed_transcript Interval_166508 chr9 60243726 60243975 + 0 NA intron (ENSMUSG00000032289.15, intron 6 of 16) protein_coding-intron (ENSMUSG00000032289.15, intron 7 of 17) -90292 ENSMUSG00000111296.1 ENSMUSG00000111296 ENSMUST00000214235 2010001M07Rik antisense Interval_131131 chr5 135325852 135326287 + 0 NA intron (ENSMUSG00000040013.11, intron 7 of 7) protein_coding-intron (ENSMUSG00000040013.11, intron 8 of 8) 23945 ENSMUSG00000040013.11 ENSMUSG00000040013 ENSMUST00000201534 Fkbp6 protein_coding Interval_147307 chr7 65718579 65720141 + 0 NA Intergenic Intergenic 25884 ENSMUSG00000078681.10 ENSMUSG00000078681 ENSMUST00000206361 Tm2d3 protein_coding Interval_122531 chr5 23618260 23618932 + 0 NA intron (ENSMUSG00000062604.11, intron 1 of 4) protein_coding-intron (ENSMUSG00000062604.11, intron 3 of 8) 55785 ENSMUSG00000088359.1 ENSMUSG00000088359 ENSMUST00000157734 Gm24009 rRNA Interval_81568 chr18 61741715 61742177 + 0 NA intron (ENSMUSG00000033032.15, intron 8 of 15) protein_coding-intron (ENSMUSG00000033032.15, intron 11 of 18) 15513 ENSMUSG00000098702.1 ENSMUSG00000098702 ENSMUST00000184530 1500015A07Rik antisense Interval_436 chr1 5241149 5241321 + 0 NA Intergenic Intergenic 36102 ENSMUSG00000104352.1 ENSMUSG00000104352 ENSMUST00000193351 Gm7182 processed_pseudogene Interval_78287 chr18 11614113 11614341 + 0 NA Intergenic Intergenic -10688 ENSMUSG00000117535.1 ENSMUSG00000117535 ENSMUST00000234170 Gm50067 processed_pseudogene Interval_39704 chr12 93887655 93888030 + 0 NA Intergenic Intergenic -39496 ENSMUSG00000098931.1 ENSMUSG00000098931 ENSMUST00000183568 Mir8099-2 miRNA Interval_136220 chr6 52138003 52138795 + 0 NA Intergenic Intergenic -6353 ENSMUSG00000082781.1 ENSMUSG00000082781 ENSMUST00000121832 Rps19-ps14 processed_pseudogene Interval_118339 chr4 130761254 130762180 + 0 NA intron (ENSMUSG00000087449.1, intron 1 of 1) protein_coding-intron (ENSMUSG00000028580.15, intron 14 of 21) 3154 ENSMUSG00000087449.1 ENSMUSG00000087449 ENSMUST00000154720 Gm12971 sense_intronic Interval_108853 chr3 132683583 132684647 + 0 NA promoter-TSS (ENSMUSG00000028029.11) protein_coding-promoter-TSS (ENSMUSG00000028029.11) -53 ENSMUSG00000028030.12 ENSMUSG00000028030 ENSMUST00000196491 Tbck protein_coding Interval_140040 chr6 113583307 113583756 + 0 NA exon (ENSMUSG00000034023.16, exon 36 of 44) protein_coding-exon (ENSMUSG00000034023.16, exon 36 of 44) 17184 ENSMUSG00000033963.16 ENSMUSG00000033963 ENSMUST00000035870 Fancd2os protein_coding Interval_79438 chr18 31890522 31891123 + 0 NA intron (ENSMUSG00000024400.16, intron 16 of 21) protein_coding-intron (ENSMUSG00000024400.16, intron 16 of 21) 21002 ENSMUSG00000044982.7 ENSMUSG00000044982 ENSMUST00000054984 Sft2d3 protein_coding Interval_65900 chr16 30122420 30123159 + 0 NA Intergenic Intergenic -16670 ENSMUSG00000116887.1 ENSMUSG00000116887 ENSMUST00000231327 Gm6029 processed_pseudogene Interval_172688 chrX 42342720 42344127 + 0 NA Intergenic Intergenic -4089 ENSMUSG00000083450.1 ENSMUSG00000083450 ENSMUST00000120480 Gm14619 processed_pseudogene Interval_155504 chr8 33965664 33967126 + 0 NA Intergenic Intergenic -19519 ENSMUSG00000110663.1 ENSMUSG00000110663 ENSMUST00000212322 Gm39157 lincRNA Interval_126880 chr5 96557746 96559861 + 0 NA intron (ENSMUSG00000034687.8, intron 9 of 73) protein_coding-intron (ENSMUSG00000034687.8, intron 9 of 73) 73037 ENSMUSG00000105446.1 ENSMUSG00000105446 ENSMUST00000199565 Gm42605 TEC Interval_4730 chr1 77947078 77948084 + 0 NA intron (ENSMUSG00000102052.1, intron 2 of 3) lincRNA-intron (ENSMUSG00000102052.1, intron 2 of 3) 24795 ENSMUSG00000102052.1 ENSMUSG00000102052 ENSMUST00000189245 Gm28387 lincRNA Interval_31026 chr11 97781798 97782939 + 0 NA promoter-TSS (ENSMUSG00000064901.1) snoRNA-promoter-TSS (ENSMUSG00000064901.1) -6 ENSMUSG00000071415.6 ENSMUSG00000071415 ENSMUST00000128801 Rpl23 protein_coding Interval_137044 chr6 66929211 66929567 + 0 NA intron (ENSMUSG00000036402.13, intron 2 of 3) protein_coding-intron (ENSMUSG00000036402.13, intron 2 of 4) 32498 ENSMUSG00000036402.13 ENSMUSG00000036402 ENSMUST00000204862 Gng12 protein_coding Interval_33442 chr11 116555675 116556167 + 0 NA intron (ENSMUSG00000020802.8, intron 1 of 17) protein_coding-intron (ENSMUSG00000020802.8, intron 1 of 17) 5503 ENSMUSG00000083314.1 ENSMUSG00000083314 ENSMUST00000119903 Gm11742 processed_pseudogene Interval_93172 chr2 70816492 70816691 + 0 NA intron (ENSMUSG00000041997.16, intron 1 of 21) protein_coding-intron (ENSMUSG00000041997.16, intron 1 of 19) -40098 ENSMUSG00000082303.1 ENSMUSG00000082303 ENSMUST00000120668 Gm13633 processed_pseudogene Interval_66321 chr16 33134737 33135328 + 0 NA Intergenic Intergenic 5216 ENSMUSG00000089109.1 ENSMUSG00000089109 ENSMUST00000158484 Gm23916 ribozyme Interval_150722 chr7 113810374 113810585 + 0 NA intron (ENSMUSG00000038156.16, intron 2 of 5) protein_coding-intron (ENSMUSG00000038156.16, intron 2 of 15) 44305 ENSMUSG00000038156.16 ENSMUSG00000038156 ENSMUST00000084696 Spon1 protein_coding Interval_127903 chr5 108774440 108775534 + 0 NA promoter-TSS (ENSMUSG00000055385.12) protein_coding-promoter-TSS (ENSMUSG00000055385.12) -5 ENSMUSG00000055385.12 ENSMUSG00000055385 ENSMUST00000068946 Rnf212 protein_coding Interval_66681 chr16 36089191 36090116 + 0 NA intron (ENSMUSG00000075229.11, intron 1 of 2) protein_coding-intron (ENSMUSG00000075229.11, intron 3 of 4) 449 ENSMUSG00000075229.11 ENSMUSG00000075229 ENSMUST00000231239 Ccdc58 protein_coding Interval_101176 chr2 178866995 178867413 + 0 NA Intergenic Intergenic 153929 ENSMUSG00000082215.3 ENSMUSG00000082215 ENSMUST00000118225 Gm14314 processed_pseudogene Interval_164056 chr9 31202926 31204052 + 0 NA intron (ENSMUSG00000031996.17, intron 1 of 15) protein_coding-intron (ENSMUSG00000031996.17, intron 1 of 16) -42167 ENSMUSG00000031996.17 ENSMUSG00000031996 ENSMUST00000213273 Aplp2 protein_coding Interval_67142 chr16 43868779 43869201 + 0 NA TTS (ENSMUSG00000022704.16) protein_coding-TTS (ENSMUSG00000022704.16) 12223 ENSMUSG00000022704.16 ENSMUSG00000022704 ENSMUST00000124674 Qtrt2 protein_coding Interval_81741 chr18 64299409 64299688 + 0 NA intron (ENSMUSG00000086128.8, intron 1 of 2) antisense-intron (ENSMUSG00000086128.8, intron 1 of 2) 11190 ENSMUSG00000118264.1 ENSMUSG00000118264 ENSMUST00000235716 Rps15-ps3 transcribed_processed_pseudogene Interval_166802 chr9 62796992 62797230 + 0 NA exon (ENSMUSG00000032244.9, exon 2 of 2) protein_coding-exon (ENSMUSG00000032244.9, exon 2 of 2) 7207 ENSMUSG00000111537.1 ENSMUSG00000111537 ENSMUST00000214567 Gm7653 processed_pseudogene Interval_90035 chr2 27441907 27443035 + 0 NA promoter-TSS (ENSMUSG00000109946.1) protein_coding-promoter-TSS (ENSMUSG00000109946.1) 147 ENSMUSG00000109946.1 ENSMUSG00000109946 ENSMUST00000209262 Brd3os protein_coding Interval_84848 chr19 17443274 17443895 + 0 NA intron (ENSMUSG00000024713.16, intron 35 of 37) protein_coding-intron (ENSMUSG00000024713.16, intron 35 of 37) 46147 ENSMUSG00000024712.9 ENSMUSG00000024712 ENSMUST00000146171 Rfk protein_coding Interval_99066 chr2 156981159 156981652 + 0 NA intron (ENSMUSG00000027634.14, intron 1 of 2) protein_coding-intron (ENSMUSG00000027634.14, intron 1 of 16) 10522 ENSMUSG00000027634.14 ENSMUSG00000027634 ENSMUST00000132748 Ndrg3 protein_coding Interval_137493 chr6 72750848 72751471 + 0 NA exon (ENSMUSG00000104501.1, exon 1 of 1) TEC-exon (ENSMUSG00000104501.1, exon 1 of 1) 755 ENSMUSG00000104501.1 ENSMUSG00000104501 ENSMUST00000193564 Gm37736 TEC Interval_134132 chr6 21417694 21417942 + 0 NA intron (ENSMUSG00000060882.5, intron 1 of 5) protein_coding-intron (ENSMUSG00000060882.5, intron 1 of 5) -73843 ENSMUSG00000107097.1 ENSMUSG00000107097 ENSMUST00000201404 Gm42584 processed_pseudogene Interval_28565 chr11 76751141 76751639 + 0 NA intron (ENSMUSG00000010392.8, intron 3 of 4) protein_coding-intron (ENSMUSG00000010392.8, intron 4 of 8) 12177 ENSMUSG00000010392.8 ENSMUSG00000010392 ENSMUST00000137767 Gosr1 protein_coding Interval_123782 chr5 35470990 35471845 + 0 NA Intergenic Intergenic 54154 ENSMUSG00000036596.6 ENSMUSG00000036596 ENSMUST00000132959 Cpz protein_coding Interval_147443 chr7 67273683 67274532 + 0 NA intron (ENSMUSG00000030557.17, intron 2 of 2) protein_coding-intron (ENSMUSG00000030557.17, intron 4 of 10) -1865 ENSMUSG00000109539.1 ENSMUSG00000109539 ENSMUST00000207632 Gm44667 TEC Interval_133339 chr6 3489477 3489687 + 0 NA intron (ENSMUSG00000044156.14, intron 1 of 2) protein_coding-intron (ENSMUSG00000044156.14, intron 1 of 9) -2153 ENSMUSG00000044156.14 ENSMUSG00000044156 ENSMUST00000200972 Hepacam2 protein_coding Interval_50023 chr13 119783748 119784103 + 0 NA intron (ENSMUSG00000094870.8, intron 2 of 3) protein_coding-intron (ENSMUSG00000094870.8, intron 3 of 6) -1015 ENSMUSG00000094870.8 ENSMUSG00000094870 ENSMUST00000223812 Zfp131 protein_coding Interval_84619 chr19 14481846 14482879 + 0 NA intron (ENSMUSG00000024642.17, intron 8 of 19) protein_coding-intron (ENSMUSG00000024642.17, intron 8 of 19) 113177 ENSMUSG00000024642.17 ENSMUSG00000024642 ENSMUST00000235975 Tle4 protein_coding Interval_16965 chr10 70173102 70173658 + 0 NA intron (ENSMUSG00000048701.13, intron 5 of 8) protein_coding-intron (ENSMUSG00000048701.13, intron 5 of 8) -1631 ENSMUSG00000048701.13 ENSMUSG00000048701 ENSMUST00000135607 Ccdc6 protein_coding Interval_20676 chr10 120178478 120178775 + 0 NA intron (ENSMUSG00000020227.10, intron 3 of 11) protein_coding-intron (ENSMUSG00000020227.10, intron 3 of 11) 9977 ENSMUSG00000112894.1 ENSMUSG00000112894 ENSMUST00000220425 Gm47009 antisense Interval_36019 chr12 33338140 33338511 + 0 NA intron (ENSMUSG00000020564.17, intron 2 of 8) protein_coding-intron (ENSMUSG00000020564.17, intron 2 of 7) 23925 ENSMUSG00000020564.17 ENSMUSG00000020564 ENSMUST00000142184 Atxn7l1 protein_coding Interval_118062 chr4 128700705 128701311 + 0 NA intron (ENSMUSG00000028796.17, intron 1 of 1) protein_coding-intron (ENSMUSG00000028796.17, intron 1 of 14) -9156 ENSMUSG00000028796.17 ENSMUSG00000028796 ENSMUST00000134421 Phc2 protein_coding Interval_137867 chr6 83043702 83045079 + 0 NA intron (ENSMUSG00000000693.10, intron 2 of 2) protein_coding-intron (ENSMUSG00000000693.10, intron 4 of 13) -5321 ENSMUSG00000099035.1 ENSMUSG00000099035 ENSMUST00000184661 Mir7040 miRNA Interval_79310 chr18 30348402 30348601 + 0 NA TTS (ENSMUSG00000033628.15) protein_coding-TTS (ENSMUSG00000033628.15) 71559 ENSMUSG00000117345.1 ENSMUSG00000117345 ENSMUST00000234753 Gm7926 processed_pseudogene Interval_117267 chr4 121167170 121167434 + 0 NA intron (ENSMUSG00000049878.13, intron 3 of 5) protein_coding-intron (ENSMUSG00000049878.13, intron 5 of 7) 32645 ENSMUSG00000064547.1 ENSMUSG00000064547 ENSMUST00000082613 Gm22982 misc_RNA Interval_2228 chr1 37218291 37218853 + 0 NA promoter-TSS (ENSMUSG00000026114.14) protein_coding-promoter-TSS (ENSMUSG00000026114.14) 193 ENSMUSG00000026114.14 ENSMUSG00000026114 ENSMUST00000027288 Cnga3 protein_coding Interval_76416 chr17 80048005 80048822 + 0 NA exon (ENSMUSG00000024095.15, exon 6 of 6) protein_coding-exon (ENSMUSG00000024095.15, exon 6 of 6) -5613 ENSMUSG00000117518.1 ENSMUSG00000117518 ENSMUST00000234039 Gpx4-ps1 processed_pseudogene Interval_121778 chr5 7984261 7984464 + 0 NA Intergenic Intergenic 23905 ENSMUSG00000012428.9 ENSMUSG00000012428 ENSMUST00000115421 Steap4 protein_coding Interval_62334 chr15 90308335 90308565 + 0 NA Intergenic Intergenic -45256 ENSMUSG00000116204.1 ENSMUSG00000116204 ENSMUST00000229899 Gm36480 lincRNA Interval_96152 chr2 120093833 120094881 + 0 NA intron (ENSMUSG00000027293.13, intron 5 of 5) protein_coding-intron (ENSMUSG00000027293.13, intron 5 of 5) -8679 ENSMUSG00000074899.6 ENSMUSG00000074899 ENSMUST00000156159 Sptbn5 protein_coding Interval_141077 chr6 124839605 124840285 + 0 NA promoter-TSS (ENSMUSG00000023439.11) protein_coding-promoter-TSS (ENSMUSG00000023439.11) -3648 ENSMUSG00000023439.11 ENSMUSG00000023439 ENSMUST00000135996 Gnb3 protein_coding Interval_161917 chr8 123746035 123747066 + 0 NA exon (ENSMUSG00000097203.2, exon 3 of 3) lincRNA-exon (ENSMUSG00000097203.2, exon 3 of 3) -7820 ENSMUSG00000110684.1 ENSMUSG00000110684 ENSMUST00000212425 Gm45866 lincRNA Interval_112112 chr4 34777840 34778868 + 0 NA promoter-TSS (ENSMUSG00000028295.14) protein_coding-promoter-TSS (ENSMUSG00000028295.14) 1 ENSMUSG00000028295.14 ENSMUSG00000028295 ENSMUST00000131295 Smim8 protein_coding Interval_65573 chr16 23457827 23458129 + 0 NA intron (ENSMUSG00000022887.9, intron 13 of 15) protein_coding-intron (ENSMUSG00000022887.9, intron 13 of 15) 28845 ENSMUSG00000033383.6 ENSMUSG00000033383 ENSMUST00000038730 Rtp1 protein_coding Interval_72719 chr17 31746702 31747315 + 0 NA Intergenic Intergenic -42518 ENSMUSG00000117355.1 ENSMUSG00000117355 ENSMUST00000234824 Gm49999 lincRNA Interval_57858 chr15 23404996 23405198 + 0 NA intron (ENSMUSG00000115560.1, intron 1 of 2) protein_coding-intron (ENSMUSG00000040420.15, intron 7 of 9) 9360 ENSMUSG00000115560.1 ENSMUSG00000115560 ENSMUST00000226326 Gm49191 antisense Interval_44973 chr13 51064508 51064904 + 0 NA Intergenic Intergenic 50620 ENSMUSG00000084609.2 ENSMUSG00000084609 ENSMUST00000122660 Gm22199 misc_RNA Interval_128539 chr5 113903123 113903712 + 0 NA exon (ENSMUSG00000105071.1, exon 1 of 1) TEC-exon (ENSMUSG00000105071.1, exon 1 of 1) 1481 ENSMUSG00000105071.1 ENSMUSG00000105071 ENSMUST00000200487 Gm43336 TEC Interval_174263 chrX 142467962 142469822 + 0 NA Intergenic Intergenic 16555 ENSMUSG00000077453.1 ENSMUSG00000077453 ENSMUST00000104265 Gm25915 snoRNA Interval_163526 chr9 21866389 21867144 + 0 NA Intergenic Intergenic -5508 ENSMUSG00000111766.1 ENSMUSG00000111766 ENSMUST00000216356 Gm47873 unitary_pseudogene Interval_106289 chr3 95159940 95162561 + 0 NA intron (ENSMUSG00000038777.19, intron 1 of 18) protein_coding-intron (ENSMUSG00000038777.19, intron 1 of 19) 756 ENSMUSG00000038777.19 ENSMUSG00000038777 ENSMUST00000126597 Sema6c protein_coding Interval_40729 chr12 107972520 107972812 + 0 NA intron (ENSMUSG00000048251.15, intron 2 of 3) protein_coding-intron (ENSMUSG00000048251.15, intron 2 of 3) 30748 ENSMUSG00000048251.15 ENSMUSG00000048251 ENSMUST00000109891 Bcl11b protein_coding Interval_82684 chr18 75917630 75918512 + 0 NA intron (ENSMUSG00000044646.15, intron 2 of 5) protein_coding-intron (ENSMUSG00000044646.15, intron 2 of 4) 97606 ENSMUSG00000118311.1 ENSMUSG00000118311 ENSMUST00000238127 1700003O11Rik antisense Interval_38606 chr12 80483375 80483635 + 0 NA promoter-TSS (ENSMUSG00000032705.9) protein_coding-promoter-TSS (ENSMUSG00000032705.9) -7385 ENSMUSG00000032705.9 ENSMUSG00000032705 ENSMUST00000219757 Exd2 protein_coding Interval_23155 chr11 20213913 20215453 + 0 NA intron (ENSMUSG00000020149.17, intron 1 of 5) protein_coding-intron (ENSMUSG00000020149.17, intron 1 of 5) 13081 ENSMUSG00000020149.17 ENSMUSG00000020149 ENSMUST00000152728 Rab1a protein_coding Interval_88664 chr2 9331804 9332867 + 0 NA Intergenic Intergenic -20185 ENSMUSG00000079604.9 ENSMUSG00000079604 ENSMUST00000154223 Gm13219 lincRNA Interval_75220 chr17 64862611 64863173 + 0 NA Intergenic Intergenic -13309 ENSMUSG00000117203.1 ENSMUSG00000117203 ENSMUST00000233516 Gm4701 processed_pseudogene Interval_146336 chr7 45395273 45396446 + 0 NA promoter-TSS (ENSMUSG00000063511.11) protein_coding-promoter-TSS (ENSMUSG00000063511.11) -687 ENSMUSG00000063511.11 ENSMUSG00000063511 ENSMUST00000210808 Snrnp70 protein_coding Interval_45307 chr13 54215376 54216695 + 0 NA intron (ENSMUSG00000034987.4, intron 1 of 1) protein_coding-intron (ENSMUSG00000034987.4, intron 2 of 2) 2028 ENSMUSG00000034987.4 ENSMUSG00000034987 ENSMUST00000211742 Hrh2 protein_coding Interval_65004 chr16 17803038 17803254 + 0 NA promoter-TSS (ENSMUSG00000012017.4) protein_coding-promoter-TSS (ENSMUSG00000012017.4) 5831 ENSMUSG00000012017.4 ENSMUSG00000012017 ENSMUST00000231301 Scarf2 protein_coding Interval_65606 chr16 23991277 23991468 + 0 NA Intergenic Intergenic 2890 ENSMUSG00000110291.1 ENSMUSG00000110291 ENSMUST00000210705 Gm37419 protein_coding Interval_155420 chr8 33468330 33469130 + 0 NA Intergenic Intergenic -15466 ENSMUSG00000109750.1 ENSMUSG00000109750 ENSMUST00000210634 Hmgb1-rs17 unprocessed_pseudogene Interval_48495 chr13 99432944 99433815 + 0 NA TTS (ENSMUSG00000052727.6) protein_coding-TTS (ENSMUSG00000052727.6) 11088 ENSMUSG00000052727.6 ENSMUSG00000052727 ENSMUST00000223820 Map1b protein_coding Interval_53946 chr14 63629736 63631367 + 0 NA intron (ENSMUSG00000035067.9, intron 1 of 2) protein_coding-intron (ENSMUSG00000035067.9, intron 1 of 2) -23179 ENSMUSG00000087652.1 ENSMUSG00000087652 ENSMUST00000137259 Gm15918 antisense Interval_87032 chr19 45708391 45708946 + 0 NA Intergenic Intergenic 34247 ENSMUSG00000025219.13 ENSMUSG00000025219 ENSMUST00000111925 Fgf8 protein_coding Interval_87749 chr19 55618861 55619509 + 0 NA intron (ENSMUSG00000024983.10, intron 8 of 8) protein_coding-intron (ENSMUSG00000024983.10, intron 7 of 7) -123079 ENSMUSG00000024985.20 ENSMUSG00000024985 ENSMUST00000148666 Tcf7l2 protein_coding Interval_29871 chr11 87442583 87444069 + 0 NA promoter-TSS (ENSMUSG00000098943.1) snoRNA-promoter-TSS (ENSMUSG00000098943.1) 89 ENSMUSG00000105025.1 ENSMUSG00000105025 ENSMUST00000200547 Rnu3b1 snoRNA Interval_107348 chr3 106093596 106093843 + 0 NA Intergenic Intergenic 2685 ENSMUSG00000105051.1 ENSMUSG00000105051 ENSMUST00000196905 Gm4248 processed_pseudogene Interval_96494 chr2 125083534 125083891 + 0 NA TTS (ENSMUSG00000027201.16) protein_coding-TTS (ENSMUSG00000027201.16) 3357 ENSMUSG00000035183.14 ENSMUSG00000035183 ENSMUST00000149963 Slc24a5 protein_coding Interval_148251 chr7 80091723 80093118 + 0 NA TTS (ENSMUSG00000048897.15) protein_coding-TTS (ENSMUSG00000048897.15) -1989 ENSMUSG00000108655.1 ENSMUSG00000108655 ENSMUST00000206423 Gm44949 antisense Interval_8993 chr1 152973497 152974642 + 0 NA intron (ENSMUSG00000042751.14, intron 2 of 8) protein_coding-intron (ENSMUSG00000042751.14, intron 1 of 10) -23972 ENSMUSG00000100702.1 ENSMUSG00000100702 ENSMUST00000187136 Gm8976 processed_pseudogene Interval_18554 chr10 87513224 87513496 + 0 NA Intergenic Intergenic 5498 ENSMUSG00000112460.1 ENSMUSG00000112460 ENSMUST00000217737 Gm48120 processed_pseudogene Interval_171334 chr9 116468468 116469388 + 0 NA Intergenic Intergenic 137760 ENSMUSG00000110752.1 ENSMUSG00000110752 ENSMUST00000217456 D730003K21Rik lincRNA Interval_110950 chr4 10773331 10773611 + 0 NA intron (ENSMUSG00000086080.7, intron 3 of 5) lincRNA-intron (ENSMUSG00000086080.7, intron 2 of 2) 24340 ENSMUSG00000086080.7 ENSMUSG00000086080 ENSMUST00000141312 1700123O12Rik lincRNA Interval_140955 chr6 123018941 123019189 + 0 NA intron (ENSMUSG00000059639.2, intron 5 of 5) protein_coding-intron (ENSMUSG00000059639.2, intron 5 of 5) 28698 ENSMUSG00000059639.2 ENSMUSG00000059639 ENSMUST00000079379 Clec4a4 protein_coding Interval_120184 chr4 143747729 143747918 + 0 NA exon (ENSMUSG00000082030.1, exon 1 of 1) processed_pseudogene-exon (ENSMUSG00000082030.1, exon 1 of 1) 2036 ENSMUSG00000082030.1 ENSMUSG00000082030 ENSMUST00000121527 Gm13081 processed_pseudogene Interval_49335 chr13 111254715 111254981 + 0 NA promoter-TSS (ENSMUSG00000055194.3) protein_coding-promoter-TSS (ENSMUSG00000055194.3) -165 ENSMUSG00000055194.3 ENSMUSG00000055194 ENSMUST00000054716 Actbl2 protein_coding Interval_61114 chr15 79322098 79322804 + 0 NA intron (ENSMUSG00000042632.17, intron 1 of 4) protein_coding-intron (ENSMUSG00000042632.17, intron 1 of 15) 8255 ENSMUSG00000092494.2 ENSMUSG00000092494 ENSMUST00000173178 Gm20420 antisense Interval_154023 chr8 11999505 12000623 + 0 NA exon (ENSMUSG00000109995.1, exon 3 of 3) lincRNA-exon (ENSMUSG00000109995.1, exon 3 of 3) 51725 ENSMUSG00000109995.1 ENSMUSG00000109995 ENSMUST00000209977 B020031H02Rik lincRNA Interval_35779 chr12 29315957 29316205 + 0 NA TTS (ENSMUSG00000112776.1) processed_pseudogene-TTS (ENSMUSG00000112776.1) 1487 ENSMUSG00000112776.1 ENSMUSG00000112776 ENSMUST00000218409 Gm6989 processed_pseudogene Interval_161472 chr8 120607375 120608948 + 0 NA TTS (ENSMUSG00000043687.15) protein_coding-TTS (ENSMUSG00000043687.15) 9609 ENSMUSG00000097702.1 ENSMUSG00000097702 ENSMUST00000181041 Gm26739 lincRNA Interval_65306 chr16 21396201 21396584 + 0 NA Intergenic Intergenic -63263 ENSMUSG00000116632.1 ENSMUSG00000116632 ENSMUST00000231972 Magef1 transcribed_processed_pseudogene Interval_22751 chr11 14699773 14700029 + 0 NA Intergenic Intergenic -22716 ENSMUSG00000083427.1 ENSMUSG00000083427 ENSMUST00000120978 Gm12007 processed_pseudogene Interval_18856 chr10 91342708 91342957 + 0 NA Intergenic Intergenic 32487 ENSMUSG00000111525.1 ENSMUSG00000111525 ENSMUST00000214371 Gm47082 lincRNA Interval_155148 chr8 27059614 27060526 + 0 NA Intergenic Intergenic 9296 ENSMUSG00000031485.15 ENSMUSG00000031485 ENSMUST00000211756 Plpbp protein_coding Interval_109946 chr3 152105173 152107436 + 0 NA promoter-TSS (ENSMUSG00000105698.1) antisense-promoter-TSS (ENSMUSG00000105698.1) -135 ENSMUSG00000105698.1 ENSMUSG00000105698 ENSMUST00000198961 Gm31881 antisense Interval_138834 chr6 92376077 92376812 + 0 NA exon (ENSMUSG00000030020.13, exon 9 of 9) protein_coding-exon (ENSMUSG00000030020.13, exon 9 of 9) -95051 ENSMUSG00000108279.1 ENSMUSG00000108279 ENSMUST00000203008 Gm44024 processed_pseudogene Interval_25694 chr11 50826918 50828168 + 0 NA intron (ENSMUSG00000044807.13, intron 1 of 4) protein_coding-intron (ENSMUSG00000044807.13, intron 1 of 4) 143 ENSMUSG00000044807.13 ENSMUSG00000044807 ENSMUST00000136333 Zfp354c protein_coding Interval_42681 chr13 17916875 17917784 + 0 NA intron (ENSMUSG00000008859.8, intron 1 of 4) protein_coding-intron (ENSMUSG00000008859.8, intron 1 of 4) -15057 ENSMUSG00000113100.1 ENSMUSG00000113100 ENSMUST00000221683 Gm48754 antisense Interval_166698 chr9 62039748 62040653 + 0 NA Intergenic Intergenic -13399 ENSMUSG00000032278.11 ENSMUSG00000032278 ENSMUST00000113990 Paqr5 protein_coding Interval_7334 chr1 129336811 129337496 + 0 NA intron (ENSMUSG00000042581.14, intron 1 of 1) protein_coding-intron (ENSMUSG00000042581.14, intron 1 of 15) -35151 ENSMUSG00000103637.1 ENSMUSG00000103637 ENSMUST00000192743 Gm38330 TEC Interval_50882 chr14 20436473 20437144 + 0 NA exon (ENSMUSG00000039543.16, exon 8 of 28) protein_coding-exon (ENSMUSG00000039543.16, exon 8 of 28) -6820 ENSMUSG00000039543.16 ENSMUSG00000039543 ENSMUST00000143940 Cfap70 protein_coding Interval_6481 chr1 111633005 111633380 + 0 NA Intergenic Intergenic 174583 ENSMUSG00000100555.1 ENSMUSG00000100555 ENSMUST00000186797 Gm8173 processed_pseudogene Interval_119811 chr4 140141819 140142336 + 0 NA promoter-TSS (ENSMUSG00000086164.1) antisense-promoter-TSS (ENSMUSG00000086164.1) -796 ENSMUSG00000086164.1 ENSMUSG00000086164 ENSMUST00000137283 Gm13029 antisense Interval_45557 chr13 55835722 55837793 + 0 NA promoter-TSS (ENSMUSG00000021506.7) protein_coding-promoter-TSS (ENSMUSG00000021506.7) -565 ENSMUSG00000021506.7 ENSMUSG00000021506 ENSMUST00000173618 Pitx1 protein_coding Interval_100927 chr2 173385785 173386058 + 0 NA Intergenic Intergenic -8645 ENSMUSG00000086114.1 ENSMUSG00000086114 ENSMUST00000147357 Gm14642 lincRNA Interval_134917 chr6 33567928 33568348 + 0 NA intron (ENSMUSG00000029763.17, intron 9 of 12) protein_coding-intron (ENSMUSG00000029763.17, intron 9 of 17) 124016 ENSMUSG00000107103.1 ENSMUSG00000107103 ENSMUST00000202529 Gm43164 TEC Interval_78384 chr18 12362941 12363258 + 0 NA intron (ENSMUSG00000024421.16, intron 1 of 74) protein_coding-intron (ENSMUSG00000024421.16, intron 1 of 74) -2700 ENSMUSG00000099663.1 ENSMUSG00000099663 ENSMUST00000189120 Gm29201 processed_pseudogene Interval_158338 chr8 81893096 81893951 + 0 NA intron (ENSMUSG00000037940.17, intron 10 of 24) protein_coding-intron (ENSMUSG00000037940.17, intron 8 of 22) 65825 ENSMUSG00000091998.2 ENSMUSG00000091998 ENSMUST00000166673 Gm17072 processed_pseudogene Interval_21328 chr10 128008042 128008816 + 0 NA promoter-TSS (ENSMUSG00000025396.7) protein_coding-promoter-TSS (ENSMUSG00000025396.7) -835 ENSMUSG00000025396.7 ENSMUSG00000025396 ENSMUST00000219780 Hsd17b6 protein_coding Interval_113300 chr4 53243623 53243840 + 0 NA Intergenic Intergenic -2465 ENSMUSG00000086947.1 ENSMUSG00000086947 ENSMUST00000155178 4930522O17Rik antisense Interval_44631 chr13 46816964 46818058 + 0 NA intron (ENSMUSG00000021375.11, intron 9 of 25) protein_coding-intron (ENSMUSG00000021375.11, intron 9 of 37) -8454 ENSMUSG00000021375.11 ENSMUSG00000021375 ENSMUST00000224923 Kif13a protein_coding Interval_19792 chr10 108985486 108985678 + 0 NA intron (ENSMUSG00000035864.14, intron 1 of 1) protein_coding-intron (ENSMUSG00000035864.14, intron 1 of 10) 23529 ENSMUSG00000035864.14 ENSMUSG00000035864 ENSMUST00000126278 Syt1 protein_coding Interval_30970 chr11 97502096 97503178 + 0 NA TTS (ENSMUSG00000049807.16) protein_coding-TTS (ENSMUSG00000049807.16) -2297 ENSMUSG00000047988.1 ENSMUSG00000047988 ENSMUST00000056955 4933428G20Rik protein_coding Interval_33262 chr11 115527543 115528605 + 0 NA intron (ENSMUSG00000020738.16, intron 2 of 2) protein_coding-intron (ENSMUSG00000020738.16, intron 3 of 3) 8202 ENSMUSG00000020738.16 ENSMUSG00000020738 ENSMUST00000050672 Sumo2 protein_coding Interval_72933 chr17 33639576 33640910 + 0 NA intron (ENSMUSG00000032739.16, intron 1 of 9) protein_coding-intron (ENSMUSG00000032739.16, intron 1 of 9) -4574 ENSMUSG00000032739.16 ENSMUSG00000032739 ENSMUST00000166215 Pram1 protein_coding Interval_8609 chr1 143803275 143803829 + 0 NA intron (ENSMUSG00000018189.12, intron 6 of 6) protein_coding-intron (ENSMUSG00000018189.12, intron 10 of 10) 8877 ENSMUSG00000018189.12 ENSMUSG00000018189 ENSMUST00000185539 Uchl5 protein_coding Interval_89260 chr2 18592281 18592706 + 0 NA Intergenic Intergenic 24367 ENSMUSG00000081181.1 ENSMUSG00000081181 ENSMUST00000120891 Gm13353 processed_pseudogene Interval_71815 chr17 26275829 26277175 + 0 NA intron (ENSMUSG00000024188.16, intron 6 of 9) protein_coding-intron (ENSMUSG00000024188.16, intron 6 of 8) -1758 ENSMUSG00000117596.1 ENSMUSG00000117596 ENSMUST00000234156 Gm50013 antisense Interval_137746 chr6 82050695 82051826 + 0 NA intron (ENSMUSG00000087136.1, intron 1 of 1) protein_coding-intron (ENSMUSG00000035104.14, intron 1 of 2) 1321 ENSMUSG00000087136.1 ENSMUSG00000087136 ENSMUST00000145950 Gm15864 antisense Interval_158473 chr8 83926928 83927244 + 0 NA intron (ENSMUSG00000013033.16, intron 5 of 22) protein_coding-intron (ENSMUSG00000013033.16, intron 5 of 23) 2470 ENSMUSG00000105569.1 ENSMUSG00000105569 ENSMUST00000199528 Gm44450 miRNA Interval_123321 chr5 31426880 31427262 + 0 NA Intergenic Intergenic -23753 ENSMUSG00000106866.1 ENSMUSG00000106866 ENSMUST00000200894 Gm43659 processed_pseudogene Interval_74994 chr17 59156140 59156568 + 0 NA Intergenic Intergenic 69489 ENSMUSG00000077629.1 ENSMUSG00000077629 ENSMUST00000104441 Gm23769 snoRNA Interval_160032 chr8 105924055 105926407 + 0 NA intron (ENSMUSG00000048310.8, intron 2 of 2) protein_coding-intron (ENSMUSG00000048310.8, intron 2 of 2) 8224 ENSMUSG00000031896.7 ENSMUSG00000031896 ENSMUST00000212561 Ctrl protein_coding Interval_154735 chr8 22934524 22934929 + 0 NA intron (ENSMUSG00000031540.14, intron 16 of 17) protein_coding-intron (ENSMUSG00000031540.14, intron 16 of 17) 23715 ENSMUSG00000109793.1 ENSMUSG00000109793 ENSMUST00000210691 Gm10043 processed_pseudogene Interval_119896 chr4 140732671 140733412 + 0 NA promoter-TSS (ENSMUSG00000040935.12) protein_coding-promoter-TSS (ENSMUSG00000040935.12) 8606 ENSMUSG00000040935.12 ENSMUSG00000040935 ENSMUST00000130267 Padi6 protein_coding Interval_120609 chr4 149675259 149676526 + 0 NA promoter-TSS (ENSMUSG00000039936.18) protein_coding-promoter-TSS (ENSMUSG00000039936.18) -1698 ENSMUSG00000039936.18 ENSMUSG00000039936 ENSMUST00000124510 Pik3cd protein_coding Interval_55467 chr14 87567269 87568768 + 0 NA Intergenic Intergenic 28919 ENSMUSG00000022019.16 ENSMUSG00000022019 ENSMUST00000227304 Tdrd3 protein_coding Interval_25754 chr11 51517400 51517696 + 0 NA intron (ENSMUSG00000063564.13, intron 3 of 28) protein_coding-intron (ENSMUSG00000063564.13, intron 3 of 28) -56884 ENSMUSG00000063564.13 ENSMUSG00000063564 ENSMUST00000151098 Col23a1 protein_coding Interval_843 chr1 12568379 12568673 + 0 NA Intergenic Intergenic 2949 ENSMUSG00000097628.1 ENSMUSG00000097628 ENSMUST00000181461 Gm2383 processed_pseudogene Interval_6819 chr1 119868061 119869557 + 0 NA Intergenic Intergenic -5972 ENSMUSG00000100042.1 ENSMUSG00000100042 ENSMUST00000185404 Gm29658 processed_pseudogene Interval_138675 chr6 91089986 91090206 + 0 NA intron (ENSMUSG00000030091.17, intron 1 of 3) protein_coding-intron (ENSMUSG00000030091.17, intron 3 of 39) 8526 ENSMUSG00000030091.17 ENSMUSG00000030091 ENSMUST00000203434 Nup210 protein_coding Interval_95971 chr2 118813864 118814959 + 0 NA exon (ENSMUSG00000027331.15, exon 2 of 8) protein_coding-exon (ENSMUSG00000027331.15, exon 2 of 8) 179 ENSMUSG00000027331.15 ENSMUSG00000027331 ENSMUST00000148877 Knstrn protein_coding Interval_80811 chr18 47423240 47423447 + 0 NA Intergenic Intergenic -7982 ENSMUSG00000117515.1 ENSMUSG00000117515 ENSMUST00000234328 Gm6883 processed_pseudogene Interval_133110 chr5 149882705 149884415 + 0 NA Intergenic Intergenic -12151 ENSMUSG00000107279.1 ENSMUSG00000107279 ENSMUST00000202611 Gm43450 lincRNA Interval_82943 chr18 79879123 79879493 + 0 NA Intergenic Intergenic -2726 ENSMUSG00000098165.1 ENSMUSG00000098165 ENSMUST00000183151 Gm26977 processed_pseudogene Interval_18555 chr10 87513527 87513794 + 0 NA Intergenic Intergenic 5798 ENSMUSG00000112460.1 ENSMUSG00000112460 ENSMUST00000217737 Gm48120 processed_pseudogene Interval_7722 chr1 133273995 133274510 + 0 NA promoter-TSS (ENSMUSG00000041757.17) protein_coding-promoter-TSS (ENSMUSG00000041757.17) -4444 ENSMUSG00000101693.1 ENSMUSG00000101693 ENSMUST00000189590 Gm19461 antisense Interval_81094 chr18 53845944 53846246 + 0 NA Intergenic Intergenic -16093 ENSMUSG00000073563.3 ENSMUSG00000073563 ENSMUST00000236399 Csnk1g3 protein_coding Interval_112413 chr4 41113905 41114885 + 0 NA TTS (ENSMUSG00000028430.14) protein_coding-TTS (ENSMUSG00000028430.14) 8904 ENSMUSG00000028430.14 ENSMUSG00000028430 ENSMUST00000135059 Nol6 protein_coding Interval_75912 chr17 72949362 72949558 + 0 NA Intergenic Intergenic 28272 ENSMUSG00000024063.13 ENSMUSG00000024063 ENSMUST00000148556 Lbh protein_coding Interval_15426 chr10 46106414 46106688 + 0 NA Intergenic Intergenic -194266 ENSMUSG00000111182.1 ENSMUSG00000111182 ENSMUST00000217441 Gm35430 lincRNA Interval_38748 chr12 81844724 81846058 + 0 NA intron (ENSMUSG00000113950.1, intron 2 of 2) lincRNA-intron (ENSMUSG00000113950.1, intron 2 of 2) 17592 ENSMUSG00000113950.1 ENSMUSG00000113950 ENSMUST00000221799 Gm47080 lincRNA Interval_164737 chr9 40897590 40898067 + 0 NA promoter-TSS (ENSMUSG00000032023.7) protein_coding-promoter-TSS (ENSMUSG00000032023.7) -210 ENSMUSG00000032023.7 ENSMUSG00000032023 ENSMUST00000160120 Jhy protein_coding Interval_25443 chr11 48594649 48594895 + 0 NA promoter-TSS (ENSMUSG00000082250.1) processed_pseudogene-promoter-TSS (ENSMUSG00000082250.1) -507 ENSMUSG00000082250.1 ENSMUSG00000082250 ENSMUST00000121448 Gm12181 processed_pseudogene Interval_72899 chr17 33030826 33031051 + 0 NA intron (ENSMUSG00000067430.7, intron 1 of 3) protein_coding-intron (ENSMUSG00000067430.7, intron 1 of 3) 2230 ENSMUSG00000067430.7 ENSMUSG00000067430 ENSMUST00000124465 Zfp763 protein_coding Interval_78572 chr18 14831214 14831457 + 0 NA intron (ENSMUSG00000117530.1, intron 1 of 1) protein_coding-intron (ENSMUSG00000054321.7, intron 10 of 14) 667 ENSMUSG00000117530.1 ENSMUSG00000117530 ENSMUST00000234669 Gm21055 processed_pseudogene Interval_62155 chr15 88305401 88306227 + 0 NA intron (ENSMUSG00000115880.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000115880.1, intron 1 of 2) -9060 ENSMUSG00000116331.1 ENSMUSG00000116331 ENSMUST00000230919 B230214G05Rik lincRNA Interval_41770 chr12 118917586 118918268 + 0 NA intron (ENSMUSG00000072791.11, intron 3 of 9) protein_coding-intron (ENSMUSG00000072791.11, intron 15 of 27) -27168 ENSMUSG00000072791.11 ENSMUSG00000072791 ENSMUST00000100982 Abcb5 protein_coding Interval_33845 chr11 118956826 118957686 + 0 NA Intergenic Intergenic -30960 ENSMUSG00000046697.17 ENSMUSG00000046697 ENSMUST00000106273 Enpp7 protein_coding Interval_57422 chr15 10685761 10688003 + 0 NA intron (ENSMUSG00000022246.14, intron 2 of 16) protein_coding-intron (ENSMUSG00000022246.14, intron 2 of 17) 27216 ENSMUSG00000022246.14 ENSMUSG00000022246 ENSMUST00000227366 Rai14 protein_coding Interval_156466 chr8 48458056 48458776 + 0 NA intron (ENSMUSG00000031561.16, intron 2 of 26) protein_coding-intron (ENSMUSG00000031561.16, intron 2 of 28) 96897 ENSMUSG00000031561.16 ENSMUSG00000031561 ENSMUST00000211812 Tenm3 protein_coding Interval_144449 chr7 25225635 25225928 + 0 NA exon (ENSMUSG00000046541.9, exon 3 of 3) protein_coding-exon (ENSMUSG00000046541.9, exon 3 of 3) -2942 ENSMUSG00000090330.2 ENSMUSG00000090330 ENSMUST00000190693 9130221H12Rik antisense Interval_26530 chr11 58445120 58445875 + 0 NA TTS (ENSMUSG00000052642.3) protein_coding-TTS (ENSMUSG00000052642.3) 7426 ENSMUSG00000052642.3 ENSMUSG00000052642 ENSMUST00000064614 Lypd9 protein_coding Interval_137198 chr6 69802678 69803534 + 0 NA Intergenic Intergenic 12048 ENSMUSG00000096422.2 ENSMUSG00000096422 ENSMUST00000103367 Igkv12-44 IG_V_gene Interval_86630 chr19 42158203 42158487 + 0 NA Intergenic Intergenic -1324 ENSMUSG00000117856.1 ENSMUSG00000117856 ENSMUST00000235531 Gm6937 processed_pseudogene Interval_65404 chr16 22172781 22173852 + 0 NA Intergenic Intergenic -50928 ENSMUSG00000064686.1 ENSMUSG00000064686 ENSMUST00000082752 Gm25810 snRNA Interval_33386 chr11 116266628 116266969 + 0 NA intron (ENSMUSG00000020780.15, intron 2 of 14) protein_coding-intron (ENSMUSG00000020780.15, intron 3 of 15) -5460 ENSMUSG00000020780.15 ENSMUSG00000020780 ENSMUST00000128808 Srp68 protein_coding Interval_168196 chr9 77910136 77911261 + 0 NA Intergenic Intergenic -6736 ENSMUSG00000032349.13 ENSMUSG00000032349 ENSMUST00000134072 Elovl5 protein_coding Interval_118244 chr4 129771459 129772575 + 0 NA Intergenic Intergenic -9581 ENSMUSG00000099322.1 ENSMUSG00000099322 ENSMUST00000183434 Gm28017 miRNA Interval_132990 chr5 149140131 149140968 + 0 NA intron (ENSMUSG00000097191.2, intron 2 of 3) lincRNA-intron (ENSMUSG00000097191.2, intron 2 of 3) -3714 ENSMUSG00000107388.1 ENSMUSG00000107388 ENSMUST00000201604 Gm42788 lincRNA Interval_4196 chr1 71565959 71566721 + 0 NA intron (ENSMUSG00000026192.13, intron 7 of 11) protein_coding-intron (ENSMUSG00000026192.13, intron 7 of 15) 9161 ENSMUSG00000026192.13 ENSMUSG00000026192 ENSMUST00000154855 Atic protein_coding Interval_39655 chr12 91823391 91823638 + 0 NA intron (ENSMUSG00000020964.14, intron 11 of 20) protein_coding-intron (ENSMUSG00000020964.14, intron 11 of 20) 25643 ENSMUSG00000020964.14 ENSMUSG00000020964 ENSMUST00000169843 Sel1l protein_coding Interval_137695 chr6 79839009 79839509 + 0 NA Intergenic Intergenic 21343 ENSMUSG00000096887.2 ENSMUSG00000096887 ENSMUST00000179797 Gm20594 protein_coding Interval_41056 chr12 110843563 110845830 + 0 NA TTS (ENSMUSG00000097650.1) bidirectional_promoter_lncRNA-TTS (ENSMUSG00000097650.1) 520 ENSMUSG00000097832.1 ENSMUSG00000097832 ENSMUST00000180988 Gm26912 lincRNA Interval_98395 chr2 152038061 152039343 + 0 NA Intergenic Intergenic 38106 ENSMUSG00000085946.1 ENSMUSG00000085946 ENSMUST00000147463 AA387200 antisense Interval_6446 chr1 109081606 109081973 + 0 NA Intergenic Intergenic -83029 ENSMUSG00000100831.1 ENSMUSG00000100831 ENSMUST00000188261 Gm17847 processed_pseudogene Interval_20073 chr10 113241043 113241543 + 0 NA Intergenic Intergenic 127904 ENSMUSG00000112228.1 ENSMUSG00000112228 ENSMUST00000220016 Gm47524 lincRNA Interval_160461 chr8 109692403 109693858 + 0 NA intron (ENSMUSG00000031729.6, intron 1 of 8) protein_coding-intron (ENSMUSG00000031729.6, intron 1 of 9) 130 ENSMUSG00000031729.6 ENSMUSG00000031729 ENSMUST00000212170 Ist1 protein_coding Interval_133866 chr6 13747663 13749684 + 0 NA Intergenic Intergenic -70735 ENSMUSG00000042742.7 ENSMUSG00000042742 ENSMUST00000203078 Bmt2 protein_coding Interval_56939 chr14 123695818 123696119 + 0 NA intron (ENSMUSG00000032925.16, intron 2 of 10) protein_coding-intron (ENSMUSG00000032925.16, intron 2 of 10) 2620 ENSMUSG00000082793.2 ENSMUSG00000082793 ENSMUST00000119073 Gm9308 processed_pseudogene Interval_117084 chr4 119429546 119431201 + 0 NA intron (ENSMUSG00000070806.5, intron 1 of 4) protein_coding-intron (ENSMUSG00000070806.5, intron 1 of 7) 7501 ENSMUSG00000070806.5 ENSMUSG00000070806 ENSMUST00000129150 Zmynd12 protein_coding Interval_122457 chr5 22999970 23000341 + 0 NA intron (ENSMUSG00000106379.1, intron 1 of 3) protein_coding-intron (ENSMUSG00000106379.1, intron 1 of 3) -68142 ENSMUSG00000060879.3 ENSMUSG00000060879 ENSMUST00000075377 Gm6564 processed_pseudogene Interval_125131 chr5 64764085 64765305 + 0 NA intron (ENSMUSG00000097640.7, intron 1 of 4) processed_transcript-intron (ENSMUSG00000097640.7, intron 1 of 4) -38927 ENSMUSG00000029178.14 ENSMUSG00000029178 ENSMUST00000198946 Klf3 protein_coding Interval_49937 chr13 118522053 118523012 + 0 NA Intergenic Intergenic -11619 ENSMUSG00000114668.1 ENSMUSG00000114668 ENSMUST00000225301 Gm47563 processed_pseudogene Interval_108041 chr3 120938255 120939008 + 0 NA Intergenic Intergenic -51899 ENSMUSG00000098097.7 ENSMUSG00000098097 ENSMUST00000182099 6530403H02Rik lincRNA Interval_83035 chr18 80638234 80638552 + 0 NA intron (ENSMUSG00000033016.16, intron 8 of 9) protein_coding-intron (ENSMUSG00000033016.16, intron 8 of 9) -29418 ENSMUSG00000033016.16 ENSMUSG00000033016 ENSMUST00000236711 Nfatc1 protein_coding Interval_24260 chr11 31899380 31899628 + 0 NA intron (ENSMUSG00000020300.14, intron 2 of 8) protein_coding-intron (ENSMUSG00000020300.14, intron 2 of 9) 26229 ENSMUSG00000020300.14 ENSMUSG00000020300 ENSMUST00000155278 Cpeb4 protein_coding Interval_152059 chr7 128687820 128688689 + 0 NA promoter-TSS (ENSMUSG00000042105.18) protein_coding-promoter-TSS (ENSMUSG00000042105.18) -235 ENSMUSG00000042105.18 ENSMUSG00000042105 ENSMUST00000118605 Inpp5f protein_coding Interval_108964 chr3 133643220 133643608 + 0 NA Intergenic Intergenic -8656 ENSMUSG00000102530.1 ENSMUSG00000102530 ENSMUST00000193574 Gm37228 TEC Interval_13287 chr10 14148949 14149253 + 0 NA TTS (ENSMUSG00000101014.1) antisense-TTS (ENSMUSG00000101014.1) 5345 ENSMUSG00000101014.1 ENSMUSG00000101014 ENSMUST00000189331 Gm28289 antisense Interval_42085 chr13 8460122 8460312 + 0 NA intron (ENSMUSG00000052551.16, intron 1 of 10) protein_coding-intron (ENSMUSG00000052551.16, intron 1 of 9) -92803 ENSMUSG00000113742.1 ENSMUSG00000113742 ENSMUST00000220604 Gm48262 TEC Interval_54527 chr14 70484737 70485018 + 0 NA intron (ENSMUSG00000022098.10, intron 2 of 3) protein_coding-intron (ENSMUSG00000022098.10, intron 16 of 19) 1762 ENSMUSG00000022098.10 ENSMUSG00000022098 ENSMUST00000226539 Bmp1 protein_coding Interval_20404 chr10 117368276 117369038 + 0 NA intron (ENSMUSG00000055531.12, intron 2 of 3) protein_coding-intron (ENSMUSG00000055531.12, intron 1 of 9) 8271 ENSMUSG00000055531.12 ENSMUSG00000055531 ENSMUST00000175924 Cpsf6 protein_coding Interval_75582 chr17 68767660 68767868 + 0 NA intron (ENSMUSG00000041565.17, intron 1 of 2) protein_coding-intron (ENSMUSG00000041565.17, intron 18 of 19) -6056 ENSMUSG00000041565.17 ENSMUSG00000041565 ENSMUST00000233696 L3mbtl4 protein_coding Interval_52858 chr14 51145908 51146948 + 0 NA intron (ENSMUSG00000035896.5, intron 1 of 1) protein_coding-intron (ENSMUSG00000035896.5, intron 1 of 1) 357 ENSMUSG00000035896.5 ENSMUSG00000035896 ENSMUST00000080126 Rnase1 protein_coding Interval_21136 chr10 126813215 126813441 + 0 NA Intergenic Intergenic -3028 ENSMUSG00000112492.1 ENSMUSG00000112492 ENSMUST00000219394 Gm9111 processed_pseudogene Interval_75168 chr17 64263762 64264091 + 0 NA Intergenic Intergenic 57689 ENSMUSG00000080455.1 ENSMUSG00000080455 ENSMUST00000116805 Gm24194 miRNA Interval_153282 chr7 143254648 143255476 + 0 NA exon (ENSMUSG00000101609.2, exon 1 of 1) antisense-exon (ENSMUSG00000101609.2, exon 1 of 1) 3695 ENSMUSG00000098857.1 ENSMUSG00000098857 ENSMUST00000183938 Gm27395 misc_RNA Interval_2411 chr1 39100308 39100787 + 0 NA Intergenic Intergenic -17209 ENSMUSG00000103182.1 ENSMUSG00000103182 ENSMUST00000195455 Gm37091 TEC Interval_41017 chr12 110641883 110642258 + 0 NA TTS (ENSMUSG00000018707.13) protein_coding-TTS (ENSMUSG00000018707.13) 1546 ENSMUSG00000018707.13 ENSMUSG00000018707 ENSMUST00000166323 Dync1h1 protein_coding Interval_134219 chr6 23156174 23156513 + 0 NA exon (ENSMUSG00000117306.1, exon 1 of 1) processed_pseudogene-exon (ENSMUSG00000117306.1, exon 1 of 1) 277 ENSMUSG00000117306.1 ENSMUSG00000117306 ENSMUST00000233718 Gm8945 processed_pseudogene Interval_24375 chr11 32732494 32732912 + 0 NA intron (ENSMUSG00000020271.17, intron 6 of 12) protein_coding-intron (ENSMUSG00000020271.17, intron 7 of 13) 42936 ENSMUSG00000098054.1 ENSMUSG00000098054 ENSMUST00000182196 Gm8192 processed_pseudogene Interval_83028 chr18 80606147 80606743 + 0 NA promoter-TSS (ENSMUSG00000118379.1) lincRNA-promoter-TSS (ENSMUSG00000118379.1) -634 ENSMUSG00000118379.1 ENSMUSG00000118379 ENSMUST00000237693 Gm41790 lincRNA Interval_160542 chr8 110514082 110514371 + 0 NA exon (ENSMUSG00000059854.8, exon 40 of 87) protein_coding-exon (ENSMUSG00000059854.8, exon 40 of 87) 15241 ENSMUSG00000105131.1 ENSMUSG00000105131 ENSMUST00000197243 Gm47306 miRNA Interval_59523 chr15 55007103 55008388 + 0 NA Intergenic Intergenic 15037 ENSMUSG00000037343.8 ENSMUSG00000037343 ENSMUST00000227254 Taf2 protein_coding Interval_156334 chr8 47504400 47504709 + 0 NA exon (ENSMUSG00000038102.15, exon 4 of 4) protein_coding-exon (ENSMUSG00000038102.15, exon 4 of 4) 23476 ENSMUSG00000038102.15 ENSMUSG00000038102 ENSMUST00000131551 Trappc11 protein_coding Interval_92766 chr2 65252520 65253241 + 0 NA Intergenic Intergenic -13784 ENSMUSG00000034903.18 ENSMUSG00000034903 ENSMUST00000132979 Cobll1 protein_coding Interval_145403 chr7 34516927 34517672 + 0 NA intron (ENSMUSG00000085124.1, intron 2 of 2) lincRNA-intron (ENSMUSG00000085124.1, intron 2 of 2) -21234 ENSMUSG00000081863.1 ENSMUSG00000081863 ENSMUST00000122458 Gm12780 processed_pseudogene Interval_132821 chr5 148099337 148099783 + 0 NA intron (ENSMUSG00000029651.16, intron 1 of 2) protein_coding-intron (ENSMUSG00000029651.16, intron 3 of 14) 84817 ENSMUSG00000066554.6 ENSMUSG00000066554 ENSMUST00000150411 Gm10167 processed_pseudogene Interval_120424 chr4 148533561 148533755 + 0 NA intron (ENSMUSG00000028991.15, intron 36 of 57) protein_coding-intron (ENSMUSG00000028991.15, intron 36 of 57) -5469 ENSMUSG00000089081.1 ENSMUSG00000089081 ENSMUST00000158456 Gm24002 snRNA Interval_101184 chr2 179120885 179121494 + 0 NA Intergenic Intergenic -56236 ENSMUSG00000061897.5 ENSMUSG00000061897 ENSMUST00000118761 Gm14292 processed_pseudogene Interval_23601 chr11 23698658 23700685 + 0 NA intron (ENSMUSG00000020280.12, intron 4 of 17) protein_coding-intron (ENSMUSG00000020280.12, intron 4 of 17) 33160 ENSMUSG00000020280.12 ENSMUSG00000020280 ENSMUST00000142287 Pus10 protein_coding Interval_38998 chr12 84373102 84373384 + 0 NA TTS (ENSMUSG00000021236.16) protein_coding-TTS (ENSMUSG00000021236.16) 2241 ENSMUSG00000021235.13 ENSMUSG00000021235 ENSMUST00000156592 Coq6 protein_coding Interval_104120 chr3 58778899 58779288 + 0 NA intron (ENSMUSG00000097725.4, intron 8 of 8) lincRNA-intron (ENSMUSG00000097725.4, intron 3 of 5) 32850 ENSMUSG00000101860.4 ENSMUSG00000101860 ENSMUST00000191233 Mindy4b-ps protein_coding Interval_114115 chr4 63548418 63548615 + 0 NA intron (ENSMUSG00000039105.6, intron 1 of 2) protein_coding-intron (ENSMUSG00000039105.6, intron 1 of 2) 3744 ENSMUSG00000039105.6 ENSMUSG00000039105 ENSMUST00000035301 Atp6v1g1 protein_coding Interval_153747 chr8 6224362 6224581 + 0 NA promoter-TSS (ENSMUSG00000088255.1) snoRNA-promoter-TSS (ENSMUSG00000088255.1) -509 ENSMUSG00000088255.1 ENSMUSG00000088255 ENSMUST00000157630 Gm24288 snoRNA Interval_157498 chr8 70897006 70898307 + 0 NA promoter-TSS (ENSMUSG00000045128.9) protein_coding-promoter-TSS (ENSMUSG00000045128.9) -261 ENSMUSG00000045128.9 ENSMUSG00000045128 ENSMUST00000212378 Rpl18a protein_coding Interval_25368 chr11 46743566 46744879 + 0 NA intron (ENSMUSG00000040405.13, intron 1 of 7) protein_coding-intron (ENSMUSG00000040405.13, intron 1 of 7) 9142 ENSMUSG00000040405.13 ENSMUSG00000040405 ENSMUST00000047568 Havcr1 protein_coding Interval_127237 chr5 101779275 101779465 + 0 NA intron (ENSMUSG00000029330.8, intron 1 of 12) protein_coding-intron (ENSMUSG00000029330.8, intron 1 of 12) -3708 ENSMUSG00000104966.1 ENSMUSG00000104966 ENSMUST00000199649 Gm43273 TEC Interval_9310 chr1 156080893 156081318 + 0 NA intron (ENSMUSG00000015484.3, intron 3 of 4) protein_coding-intron (ENSMUSG00000015484.3, intron 3 of 4) 45333 ENSMUSG00000050565.16 ENSMUSG00000050565 ENSMUST00000125371 Tor1aip2 protein_coding Interval_47888 chr13 94173120 94174752 + 0 NA promoter-TSS (ENSMUSG00000045312.12) protein_coding-promoter-TSS (ENSMUSG00000045312.12) -33819 ENSMUSG00000087319.1 ENSMUSG00000087319 ENSMUST00000134284 Gm15907 lincRNA Interval_81272 chr18 57252020 57252934 + 0 NA intron (ENSMUSG00000024593.15, intron 8 of 23) protein_coding-intron (ENSMUSG00000024593.15, intron 8 of 24) 62663 ENSMUSG00000118230.1 ENSMUSG00000118230 ENSMUST00000235284 Gm50200 processed_pseudogene Interval_36896 chr12 55026968 55027221 + 0 NA Intergenic Intergenic 30022 ENSMUSG00000088922.1 ENSMUSG00000088922 ENSMUST00000158297 Gm24296 snRNA Interval_39313 chr12 86651351 86651588 + 0 NA TTS (ENSMUSG00000098423.1) misc_RNA-TTS (ENSMUSG00000098423.1) 299 ENSMUSG00000098423.1 ENSMUSG00000098423 ENSMUST00000184362 Gm27993 misc_RNA Interval_145108 chr7 30072075 30073003 + 0 NA promoter-TSS (ENSMUSG00000098022.7) protein_coding-promoter-TSS (ENSMUSG00000098022.7) 280 ENSMUSG00000098022.7 ENSMUSG00000098022 ENSMUST00000183190 Zfp82 protein_coding Interval_101231 chr2 179657799 179658100 + 0 NA intron (ENSMUSG00000000305.12, intron 2 of 2) protein_coding-intron (ENSMUSG00000000305.12, intron 2 of 15) -44382 ENSMUSG00000083410.1 ENSMUSG00000083410 ENSMUST00000120800 Gm14300 processed_pseudogene Interval_47715 chr13 91659264 91659507 + 0 NA intron (ENSMUSG00000003992.15, intron 5 of 10) protein_coding-intron (ENSMUSG00000003992.15, intron 5 of 16) -63871 ENSMUSG00000077278.1 ENSMUSG00000077278 ENSMUST00000104090 Gm22778 snoRNA Interval_40531 chr12 105543141 105544110 + 0 NA Intergenic Intergenic -17638 ENSMUSG00000113479.1 ENSMUSG00000113479 ENSMUST00000222492 Gm47796 lincRNA Interval_42983 chr13 22075230 22075479 + 0 NA Intergenic Intergenic -2899 ENSMUSG00000082869.1 ENSMUSG00000082869 ENSMUST00000117599 Vmn1r-ps93 unprocessed_pseudogene Interval_24681 chr11 35875550 35875988 + 0 NA promoter-TSS (ENSMUSG00000018849.6) protein_coding-promoter-TSS (ENSMUSG00000018849.6) -22215 ENSMUSG00000018849.6 ENSMUSG00000018849 ENSMUST00000127086 Wwc1 protein_coding Interval_90694 chr2 31960172 31962105 + 0 NA promoter-TSS (ENSMUSG00000001864.13) protein_coding-promoter-TSS (ENSMUSG00000001864.13) -781 ENSMUSG00000001864.13 ENSMUSG00000001864 ENSMUST00000145137 Aif1l protein_coding Interval_98361 chr2 151781219 151781861 + 0 NA Intergenic Intergenic 16705 ENSMUSG00000083088.1 ENSMUSG00000083088 ENSMUST00000119923 Gm14153 processed_pseudogene Interval_34917 chr12 13425421 13426710 + 0 NA promoter-TSS (ENSMUSG00000113476.1) TEC-promoter-TSS (ENSMUSG00000113476.1) -348 ENSMUSG00000113476.1 ENSMUSG00000113476 ENSMUST00000220829 Gm48309 TEC Interval_141430 chr6 128234000 128234833 + 0 NA intron (ENSMUSG00000030353.15, intron 8 of 11) protein_coding-intron (ENSMUSG00000030353.15, intron 9 of 11) -20402 ENSMUSG00000108280.1 ENSMUSG00000108280 ENSMUST00000203793 Gm8703 processed_pseudogene Interval_37559 chr12 69865822 69867002 + 0 NA intron (ENSMUSG00000034761.15, intron 1 of 29) protein_coding-intron (ENSMUSG00000034761.15, intron 2 of 30) 26691 ENSMUSG00000034761.15 ENSMUSG00000034761 ENSMUST00000147451 Map4k5 protein_coding Interval_21157 chr10 126963715 126964114 + 0 NA Intergenic Intergenic 1591 ENSMUSG00000112761.1 ENSMUSG00000112761 ENSMUST00000217897 Gm47972 lincRNA Interval_79602 chr18 33957715 33959104 + 0 NA intron (ENSMUSG00000024376.7, intron 2 of 2) protein_coding-intron (ENSMUSG00000024376.7, intron 2 of 23) 48557 ENSMUSG00000024376.7 ENSMUSG00000024376 ENSMUST00000237971 Epb41l4a protein_coding Interval_117229 chr4 120785680 120786274 + 0 NA intron (ENSMUSG00000032897.17, intron 2 of 4) protein_coding-intron (ENSMUSG00000032897.17, intron 2 of 9) -13280 ENSMUSG00000065409.1 ENSMUSG00000065409 ENSMUST00000083475 Mir30e miRNA Interval_29103 chr11 80354958 80355278 + 0 NA exon (ENSMUSG00000017692.8, exon 9 of 9) protein_coding-exon (ENSMUSG00000017692.8, exon 9 of 9) 8715 ENSMUSG00000017692.8 ENSMUSG00000017692 ENSMUST00000157016 Rhbdl3 protein_coding Interval_84660 chr19 14805294 14805559 + 0 NA Intergenic Intergenic -86946 ENSMUSG00000084675.1 ENSMUSG00000084675 ENSMUST00000122726 Gm26026 snRNA Interval_2847 chr1 46416354 46417191 + 0 NA exon (ENSMUSG00000101262.1, exon 2 of 2) processed_pseudogene-exon (ENSMUSG00000101262.1, exon 2 of 2) 2270 ENSMUSG00000101262.1 ENSMUSG00000101262 ENSMUST00000188705 Gm8326 processed_pseudogene Interval_72937 chr17 33662678 33663080 + 0 NA TTS (ENSMUSG00000059208.15) protein_coding-TTS (ENSMUSG00000059208.15) 18062 ENSMUSG00000032739.16 ENSMUSG00000032739 ENSMUST00000166215 Pram1 protein_coding Interval_80172 chr18 38013637 38015136 + 0 NA Intergenic Intergenic -9143 ENSMUSG00000118056.1 ENSMUSG00000118056 ENSMUST00000236681 Gm30093 lincRNA Interval_74906 chr17 57211581 57212351 + 0 NA intron (ENSMUSG00000024164.15, intron 28 of 40) protein_coding-intron (ENSMUSG00000024164.15, intron 28 of 40) 5262 ENSMUSG00000099066.1 ENSMUSG00000099066 ENSMUST00000184453 Mir6978 miRNA Interval_163765 chr9 25481250 25482475 + 0 NA exon (ENSMUSG00000036611.5, exon 1 of 8) protein_coding-exon (ENSMUSG00000036611.5, exon 1 of 8) -1005 ENSMUSG00000036611.5 ENSMUSG00000036611 ENSMUST00000156237 Eepd1 protein_coding Interval_140987 chr6 123858172 123858499 + 0 NA Intergenic Intergenic -4872 ENSMUSG00000094672.2 ENSMUSG00000094672 ENSMUST00000233622 Vmn2r25 protein_coding Interval_93742 chr2 76405988 76407516 + 0 NA intron (ENSMUSG00000042359.18, intron 1 of 24) protein_coding-intron (ENSMUSG00000042359.18, intron 1 of 26) 36768 ENSMUSG00000042369.8 ENSMUSG00000042369 ENSMUST00000046389 Rbm45 protein_coding Interval_166475 chr9 59929430 59930732 + 0 NA intron (ENSMUSG00000110803.1, intron 2 of 3) antisense-intron (ENSMUSG00000110803.1, intron 2 of 3) 10996 ENSMUSG00000110803.1 ENSMUSG00000110803 ENSMUST00000215963 Gm20275 antisense Interval_49861 chr13 117259259 117259527 + 0 NA intron (ENSMUSG00000021728.8, intron 3 of 3) protein_coding-intron (ENSMUSG00000021728.8, intron 4 of 8) -38321 ENSMUSG00000091423.2 ENSMUSG00000091423 ENSMUST00000238456 Gm17509 antisense Interval_27729 chr11 69708047 69710909 + 0 NA Intergenic Intergenic -13380 ENSMUSG00000018752.19 ENSMUSG00000018752 ENSMUST00000108649 Tnfsfm13 protein_coding Interval_37012 chr12 56350450 56351470 + 0 NA Intergenic Intergenic -5125 ENSMUSG00000021028.8 ENSMUSG00000021028 ENSMUST00000218118 Mbip protein_coding Interval_152351 chr7 132213409 132213903 + 0 NA intron (ENSMUSG00000030849.18, intron 2 of 6) protein_coding-intron (ENSMUSG00000030849.18, intron 2 of 6) 59485 ENSMUSG00000086814.1 ENSMUSG00000086814 ENSMUST00000152302 Gm15677 antisense Interval_125775 chr5 74061116 74062772 + 0 NA intron (ENSMUSG00000054814.14, intron 1 of 8) protein_coding-intron (ENSMUSG00000054814.14, intron 1 of 8) 1906 ENSMUSG00000106973.1 ENSMUSG00000106973 ENSMUST00000201934 Gm43415 TEC Interval_47678 chr13 91166014 91166271 + 0 NA intron (ENSMUSG00000021619.6, intron 2 of 6) protein_coding-intron (ENSMUSG00000021619.6, intron 2 of 7) -54310 ENSMUSG00000091419.2 ENSMUSG00000091419 ENSMUST00000164671 Gm17450 pseudogene Interval_162101 chr8 125101763 125102630 + 0 NA intron (ENSMUSG00000043051.17, intron 4 of 13) protein_coding-intron (ENSMUSG00000043051.17, intron 3 of 12) 14209 ENSMUSG00000043051.17 ENSMUSG00000043051 ENSMUST00000126111 Disc1 protein_coding Interval_132567 chr5 146373197 146373466 + 0 NA Intergenic Intergenic -82278 ENSMUSG00000029636.11 ENSMUSG00000029636 ENSMUST00000238592 Wasf3 protein_coding Interval_134155 chr6 22054920 22056437 + 0 NA intron (ENSMUSG00000062980.15, intron 2 of 3) protein_coding-intron (ENSMUSG00000062980.15, intron 3 of 9) 29735 ENSMUSG00000062980.15 ENSMUSG00000062980 ENSMUST00000154734 Cped1 protein_coding Interval_60017 chr15 63987564 63989621 + 0 NA intron (ENSMUSG00000022378.14, intron 1 of 11) protein_coding-intron (ENSMUSG00000022378.14, intron 1 of 11) -37356 ENSMUSG00000065936.1 ENSMUSG00000065936 ENSMUST00000084002 Gm25628 snRNA Interval_19918 chr10 111194325 111194547 + 0 NA intron (ENSMUSG00000020189.15, intron 1 of 5) protein_coding-intron (ENSMUSG00000020189.15, intron 1 of 22) 14484 ENSMUSG00000112642.1 ENSMUSG00000112642 ENSMUST00000219788 Gm17849 processed_pseudogene Interval_152738 chr7 137060489 137061946 + 0 NA intron (ENSMUSG00000054612.4, intron 2 of 4) protein_coding-intron (ENSMUSG00000054612.4, intron 2 of 4) -106603 ENSMUSG00000110174.1 ENSMUSG00000110174 ENSMUST00000211656 Gm45499 processed_pseudogene Interval_15629 chr10 52439473 52440542 + 0 NA exon (ENSMUSG00000023068.16, exon 5 of 5) protein_coding-exon (ENSMUSG00000023068.16, exon 5 of 5) -10362 ENSMUSG00000112563.1 ENSMUSG00000112563 ENSMUST00000218661 Gm47608 TEC Interval_152447 chr7 133064077 133064474 + 0 NA intron (ENSMUSG00000030970.16, intron 2 of 3) protein_coding-intron (ENSMUSG00000030970.16, intron 2 of 10) 55996 ENSMUSG00000110282.1 ENSMUSG00000110282 ENSMUST00000209529 B930086L07Rik TEC Interval_144425 chr7 25081498 25083175 + 0 NA exon (ENSMUSG00000045252.11, exon 2 of 2) protein_coding-exon (ENSMUSG00000045252.11, exon 2 of 2) 9769 ENSMUSG00000045252.11 ENSMUSG00000045252 ENSMUST00000053410 Zfp574 protein_coding Interval_126856 chr5 95817561 95817848 + 0 NA Intergenic Intergenic 19746 ENSMUSG00000106805.1 ENSMUSG00000106805 ENSMUST00000202063 Gm42714 unprocessed_pseudogene Interval_49175 chr13 109184234 109184529 + 0 NA intron (ENSMUSG00000021699.17, intron 1 of 14) protein_coding-intron (ENSMUSG00000021699.17, intron 1 of 14) -140363 ENSMUSG00000076946.2 ENSMUSG00000076946 ENSMUST00000103758 Mir582 miRNA Interval_45506 chr13 55522556 55524467 + 0 NA exon (ENSMUSG00000035711.5, exon 5 of 5) protein_coding-exon (ENSMUSG00000035711.5, exon 5 of 5) 5043 ENSMUSG00000035711.5 ENSMUSG00000035711 ENSMUST00000223563 Dok3 protein_coding Interval_111124 chr4 12425258 12425942 + 0 NA Intergenic Intergenic 154201 ENSMUSG00000085909.1 ENSMUSG00000085909 ENSMUST00000155156 Gm11846 lincRNA Interval_46702 chr13 69492773 69493608 + 0 NA Intergenic Intergenic -20810 ENSMUSG00000113486.1 ENSMUSG00000113486 ENSMUST00000221578 Gm48676 processed_pseudogene Interval_174592 chrX 159541262 159542651 + 0 NA intron (ENSMUSG00000044150.12, intron 1 of 2) protein_coding-intron (ENSMUSG00000044150.12, intron 1 of 10) -25582 ENSMUSG00000044150.12 ENSMUSG00000044150 ENSMUST00000154694 Bclaf3 protein_coding Interval_25526 chr11 49577412 49577643 + 0 NA Intergenic Intergenic 10935 ENSMUSG00000069890.3 ENSMUSG00000069890 ENSMUST00000093146 1700024J04Rik pseudogene Interval_75234 chr17 65002534 65002763 + 0 NA Intergenic Intergenic -57796 ENSMUSG00000077691.1 ENSMUSG00000077691 ENSMUST00000104503 Gm25344 snoRNA Interval_133098 chr5 149789768 149790887 + 0 NA Intergenic Intergenic 21424 ENSMUSG00000106740.1 ENSMUSG00000106740 ENSMUST00000202876 Gm21221 lincRNA Interval_131872 chr5 140514652 140515834 + 0 NA intron (ENSMUSG00000036599.10, intron 1 of 1) protein_coding-intron (ENSMUSG00000036599.10, intron 1 of 1) 9668 ENSMUSG00000036599.10 ENSMUSG00000036599 ENSMUST00000124142 Chst12 protein_coding Interval_2931 chr1 51106093 51106527 + 0 NA intron (ENSMUSG00000026109.14, intron 5 of 9) protein_coding-intron (ENSMUSG00000026109.14, intron 5 of 9) 34912 ENSMUSG00000101242.1 ENSMUSG00000101242 ENSMUST00000189560 Gm28319 antisense Interval_29312 chr11 82856677 82858278 + 0 NA intron (ENSMUSG00000020696.18, intron 1 of 7) protein_coding-intron (ENSMUSG00000020696.18, intron 1 of 7) -11385 ENSMUSG00000020696.18 ENSMUSG00000020696 ENSMUST00000126660 Rffl protein_coding Interval_174298 chrX 144271309 144271522 + 0 NA Intergenic Intergenic -3211 ENSMUSG00000081897.1 ENSMUSG00000081897 ENSMUST00000119534 Gm15067 processed_pseudogene Interval_6918 chr1 120667752 120668376 + 0 NA intron (ENSMUSG00000099957.4, intron 2 of 6) lincRNA-intron (ENSMUSG00000099957.4, intron 2 of 6) 46324 ENSMUSG00000099957.4 ENSMUSG00000099957 ENSMUST00000186982 2610027F03Rik lincRNA Interval_36158 chr12 37079881 37080614 + 0 NA intron (ENSMUSG00000113764.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000114052.1, intron 2 of 2) 26542 ENSMUSG00000101067.1 ENSMUSG00000101067 ENSMUST00000190633 Gm29007 lincRNA Interval_35056 chr12 16897298 16897557 + 0 NA intron (ENSMUSG00000020580.10, intron 1 of 32) protein_coding-intron (ENSMUSG00000020580.10, intron 1 of 32) 24878 ENSMUSG00000113202.1 ENSMUSG00000113202 ENSMUST00000222207 Gm48291 processed_pseudogene Interval_161508 chr8 120818046 120818278 + 0 NA intron (ENSMUSG00000092329.1, intron 1 of 15) protein_coding-intron (ENSMUSG00000092329.1, intron 1 of 15) -62044 ENSMUSG00000097087.1 ENSMUSG00000097087 ENSMUST00000181778 Gm26878 lincRNA Interval_69001 chr16 90030143 90031318 + 0 NA intron (ENSMUSG00000002489.16, intron 2 of 11) protein_coding-intron (ENSMUSG00000002489.16, intron 2 of 11) -59253 ENSMUSG00000116536.1 ENSMUSG00000116536 ENSMUST00000232386 Gm2805 processed_pseudogene Interval_104127 chr3 58863280 58863702 + 0 NA intron (ENSMUSG00000043850.15, intron 1 of 1) protein_coding-intron (ENSMUSG00000043850.15, intron 2 of 2) 2306 ENSMUSG00000043850.15 ENSMUSG00000043850 ENSMUST00000161419 Clrn1 protein_coding Interval_143574 chr7 12921497 12922692 + 0 NA promoter-TSS (ENSMUSG00000012848.15) protein_coding-promoter-TSS (ENSMUSG00000012848.15) -224 ENSMUSG00000012848.15 ENSMUSG00000012848 ENSMUST00000137329 Rps5 protein_coding Interval_108601 chr3 129509400 129510874 + 0 NA Intergenic Intergenic -22218 ENSMUSG00000041220.10 ENSMUSG00000041220 ENSMUST00000198369 Elovl6 protein_coding Interval_16224 chr10 61527596 61528099 + 0 NA intron (ENSMUSG00000037151.8, intron 3 of 4) protein_coding-intron (ENSMUSG00000037151.8, intron 3 of 4) -17262 ENSMUSG00000112710.1 ENSMUSG00000112710 ENSMUST00000219782 Gm17829 processed_pseudogene Interval_121372 chr4 155318374 155318707 + 0 NA intron (ENSMUSG00000029053.16, intron 4 of 17) protein_coding-intron (ENSMUSG00000029053.16, intron 4 of 17) -25143 ENSMUSG00000098729.1 ENSMUSG00000098729 ENSMUST00000184626 Gm27200 antisense Interval_10474 chr1 171202049 171202300 + 0 NA Intergenic Intergenic -5906 ENSMUSG00000038370.6 ENSMUSG00000038370 ENSMUST00000111332 Pcp4l1 protein_coding Interval_107468 chr3 107911062 107911964 + 0 NA promoter-TSS (ENSMUSG00000105872.1) unprocessed_pseudogene-promoter-TSS (ENSMUSG00000105872.1) -264 ENSMUSG00000105872.1 ENSMUSG00000105872 ENSMUST00000200276 Gm9515 unprocessed_pseudogene Interval_6922 chr1 120728577 120729934 + 0 NA Intergenic Intergenic -29188 ENSMUSG00000101386.1 ENSMUSG00000101386 ENSMUST00000188147 Gm29346 lincRNA Interval_41673 chr12 117630411 117630711 + 0 NA intron (ENSMUSG00000041992.9, intron 7 of 8) protein_coding-intron (ENSMUSG00000041992.9, intron 9 of 27) 28522 ENSMUSG00000113575.1 ENSMUSG00000113575 ENSMUST00000223270 A930023M06Rik sense_intronic Interval_46182 chr13 62262737 62265370 + 0 NA intron (ENSMUSG00000113081.1, intron 1 of 2) transcribed_processed_pseudogene-intron (ENSMUSG00000113081.1, intron 1 of 2) -8708 ENSMUSG00000113081.1 ENSMUSG00000113081 ENSMUST00000221763 Gm3333 transcribed_processed_pseudogene Interval_61617 chr15 82983608 82983834 + 0 NA intron (ENSMUSG00000100552.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000100552.1, intron 1 of 1) 4109 ENSMUSG00000100552.1 ENSMUSG00000100552 ENSMUST00000186748 Gm29019 lincRNA Interval_104862 chr3 76176688 76176944 + 0 NA intron (ENSMUSG00000034098.14, intron 2 of 15) protein_coding-intron (ENSMUSG00000034098.14, intron 2 of 15) -135093 ENSMUSG00000104223.1 ENSMUSG00000104223 ENSMUST00000194986 Gm18428 processed_pseudogene Interval_20283 chr10 116652983 116654400 + 0 NA Intergenic Intergenic 14399 ENSMUSG00000112436.1 ENSMUSG00000112436 ENSMUST00000218860 Gm48403 processed_pseudogene Interval_145216 chr7 30729041 30730084 + 0 NA promoter-TSS (ENSMUSG00000006315.9) protein_coding-promoter-TSS (ENSMUSG00000006315.9) -241 ENSMUSG00000006315.9 ENSMUSG00000006315 ENSMUST00000207263 Tmem147 protein_coding Interval_101536 chr3 4339095 4340140 + 0 NA TTS (ENSMUSG00000094830.1) rRNA-TTS (ENSMUSG00000094830.1) 619 ENSMUSG00000094830.1 ENSMUSG00000094830 ENSMUST00000104719 n-R5s194 rRNA Interval_39279 chr12 86435539 86436291 + 0 NA intron (ENSMUSG00000021255.17, intron 1 of 6) protein_coding-intron (ENSMUSG00000021255.17, intron 1 of 6) -34202 ENSMUSG00000021255.17 ENSMUSG00000021255 ENSMUST00000136464 Esrrb protein_coding Interval_166902 chr9 63828995 63829419 + 0 NA Intergenic Intergenic -27410 ENSMUSG00000111137.1 ENSMUSG00000111137 ENSMUST00000215986 Gm2553 processed_pseudogene Interval_136598 chr6 56450253 56450733 + 0 NA intron (ENSMUSG00000004347.17, intron 3 of 19) protein_coding-intron (ENSMUSG00000004347.17, intron 2 of 18) 133353 ENSMUSG00000096087.1 ENSMUSG00000096087 ENSMUST00000104123 Gm24709 snoRNA Interval_68357 chr16 74066058 74066489 + 0 NA promoter-TSS (ENSMUSG00000116902.1) TEC-promoter-TSS (ENSMUSG00000116902.1) -420 ENSMUSG00000116902.1 ENSMUSG00000116902 ENSMUST00000231944 Gm49660 TEC Interval_65000 chr16 17778047 17778290 + 0 NA exon (ENSMUSG00000022750.18, exon 4 of 4) protein_coding-exon (ENSMUSG00000022750.18, exon 4 of 4) 18491 ENSMUSG00000022750.18 ENSMUSG00000022750 ENSMUST00000140306 Klhl22 protein_coding Interval_104644 chr3 69051472 69052032 + 0 NA Intergenic Intergenic -7029 ENSMUSG00000034317.14 ENSMUSG00000034317 ENSMUST00000153259 Trim59 protein_coding Interval_124902 chr5 59924968 59925913 + 0 NA Intergenic Intergenic 30700 ENSMUSG00000104563.1 ENSMUSG00000104563 ENSMUST00000200022 Gm43041 TEC Interval_48020 chr13 95302487 95302688 + 0 NA Intergenic Intergenic -24180 ENSMUSG00000041995.8 ENSMUSG00000041995 ENSMUST00000222456 Zbed3 protein_coding Interval_169019 chr9 90226777 90227692 + 0 NA intron (ENSMUSG00000037410.13, intron 5 of 12) protein_coding-intron (ENSMUSG00000037410.13, intron 5 of 12) -5609 ENSMUSG00000081520.1 ENSMUSG00000081520 ENSMUST00000120385 Gm16200 processed_pseudogene Interval_173416 chrX 92712187 92712708 + 0 NA Intergenic Intergenic -112875 ENSMUSG00000067649.3 ENSMUSG00000067649 ENSMUST00000088137 Mageb18 protein_coding Interval_98725 chr2 154516250 154516823 + 0 NA intron (ENSMUSG00000038533.15, intron 1 of 1) protein_coding-intron (ENSMUSG00000038533.15, intron 5 of 10) -30549 ENSMUSG00000038523.10 ENSMUSG00000038523 ENSMUST00000109709 1700003F12Rik protein_coding Interval_132376 chr5 144565338 144566633 + 0 NA Intergenic Intergenic 20083 ENSMUSG00000059991.7 ENSMUSG00000059991 ENSMUST00000071782 Nptx2 protein_coding Interval_106390 chr3 95863688 95864563 + 0 NA promoter-TSS (ENSMUSG00000054312.6) protein_coding-promoter-TSS (ENSMUSG00000054312.6) 7242 ENSMUSG00000054312.6 ENSMUSG00000054312 ENSMUST00000142437 Mrps21 protein_coding Interval_88495 chr2 5618479 5619023 + 0 NA intron (ENSMUSG00000039145.16, intron 1 of 1) protein_coding-intron (ENSMUSG00000039145.16, intron 1 of 10) 15180 ENSMUSG00000082013.1 ENSMUSG00000082013 ENSMUST00000117145 Gm13216 processed_pseudogene Interval_88406 chr2 4867990 4868777 + 0 NA Intergenic Intergenic -15674 ENSMUSG00000026662.13 ENSMUSG00000026662 ENSMUST00000140045 Sephs1 protein_coding Interval_79859 chr18 35605814 35607845 + 0 NA intron (ENSMUSG00000037058.16, intron 1 of 3) protein_coding-intron (ENSMUSG00000037058.16, intron 1 of 3) -3455 ENSMUSG00000037058.16 ENSMUSG00000037058 ENSMUST00000237730 Paip2 protein_coding Interval_145240 chr7 30851679 30852714 + 0 NA Intergenic Intergenic 3971 ENSMUSG00000019429.7 ENSMUSG00000019429 ENSMUST00000185748 Ffar3 protein_coding Interval_145826 chr7 39654863 39656058 + 0 NA Intergenic Intergenic 7549 ENSMUSG00000100912.1 ENSMUSG00000100912 ENSMUST00000190623 Gm2021 processed_pseudogene Interval_120009 chr4 141353669 141354215 + 0 NA Intergenic Intergenic 3149 ENSMUSG00000084238.1 ENSMUSG00000084238 ENSMUST00000118041 Gm13076 processed_pseudogene Interval_172845 chrX 51895775 51896087 + 0 NA Intergenic Intergenic 51246 ENSMUSG00000088792.1 ENSMUSG00000088792 ENSMUST00000158167 Gm22539 snoRNA Interval_52721 chr14 48992222 48992551 + 0 NA Intergenic Intergenic 9450 ENSMUSG00000087754.1 ENSMUSG00000087754 ENSMUST00000157129 Gm23470 snRNA Interval_29912 chr11 87707414 87708524 + 0 NA intron (ENSMUSG00000034177.15, intron 1 of 8) protein_coding-intron (ENSMUSG00000034177.15, intron 1 of 8) 5846 ENSMUSG00000085972.1 ENSMUSG00000085972 ENSMUST00000142895 1110028F11Rik sense_intronic Interval_56799 chr14 122161445 122161716 + 0 NA Intergenic Intergenic 40027 ENSMUSG00000090674.1 ENSMUSG00000090674 ENSMUST00000166043 Gm17082 processed_pseudogene Interval_174609 chrX 160046965 160048078 + 0 NA intron (ENSMUSG00000031303.8, intron 6 of 28) protein_coding-intron (ENSMUSG00000031303.8, intron 6 of 28) 11200 ENSMUSG00000082810.1 ENSMUSG00000082810 ENSMUST00000121310 Gm8682 processed_pseudogene Interval_27551 chr11 68622994 68624183 + 0 NA Intergenic Intergenic 36567 ENSMUSG00000045915.15 ENSMUSG00000045915 ENSMUST00000102612 Ccdc42 protein_coding Interval_42437 chr13 13530960 13531159 + 0 NA Intergenic Intergenic 16321 ENSMUSG00000114068.1 ENSMUSG00000114068 ENSMUST00000221249 Gm48783 TEC Interval_165726 chr9 51914951 51915259 + 0 NA exon (ENSMUSG00000111836.1, exon 1 of 1) lincRNA-exon (ENSMUSG00000111836.1, exon 1 of 1) 678 ENSMUSG00000111836.1 ENSMUSG00000111836 ENSMUST00000213311 4933407I05Rik lincRNA Interval_129635 chr5 121451801 121453168 + 0 NA promoter-TSS (ENSMUSG00000029616.9) protein_coding-promoter-TSS (ENSMUSG00000029616.9) 3 ENSMUSG00000029616.9 ENSMUSG00000029616 ENSMUST00000111802 Erp29 protein_coding Interval_120350 chr4 148060196 148060907 + 0 NA TTS (ENSMUSG00000029009.17) protein_coding-TTS (ENSMUSG00000029009.17) 7873 ENSMUSG00000029009.17 ENSMUSG00000029009 ENSMUST00000156113 Mthfr protein_coding Interval_32507 chr11 107994012 107994790 + 0 NA exon (ENSMUSG00000086078.1, exon 2 of 2) antisense-exon (ENSMUSG00000086078.1, exon 2 of 2) 379 ENSMUSG00000086078.1 ENSMUSG00000086078 ENSMUST00000137175 Gm11657 antisense Interval_41472 chr12 114769853 114770223 + 0 NA Intergenic Intergenic 3323 ENSMUSG00000094241.2 ENSMUSG00000094241 ENSMUST00000191861 Ighv1-24 IG_V_gene Interval_86785 chr19 43884829 43885202 + 0 NA intron (ENSMUSG00000025195.9, intron 4 of 15) protein_coding-intron (ENSMUSG00000025195.9, intron 3 of 14) -5247 ENSMUSG00000025195.9 ENSMUSG00000025195 ENSMUST00000212157 Dnmbp protein_coding Interval_173687 chrX 101953983 101954702 + 0 NA intron (ENSMUSG00000079481.11, intron 2 of 2) protein_coding-intron (ENSMUSG00000079481.11, intron 1 of 7) -7455 ENSMUSG00000079481.11 ENSMUSG00000079481 ENSMUST00000129185 Nhsl2 protein_coding Interval_156687 chr8 57314201 57314485 + 0 NA TTS (ENSMUSG00000100510.7) processed_transcript-TTS (ENSMUSG00000100510.7) 5885 ENSMUSG00000100510.7 ENSMUSG00000100510 ENSMUST00000187718 Hand2os1 processed_transcript Interval_162404 chr8 128075282 128075502 + 0 NA Intergenic Intergenic 202833 ENSMUSG00000099326.1 ENSMUSG00000099326 ENSMUST00000184910 Mir21c miRNA Interval_41457 chr12 114366372 114366875 + 0 NA exon (ENSMUSG00000076676.2, exon 2 of 2) IG_V_gene-exon (ENSMUSG00000076676.2, exon 2 of 2) 331 ENSMUSG00000076676.2 ENSMUSG00000076676 ENSMUST00000103485 Ighv12-3 IG_V_gene Interval_134450 chr6 28825762 28826457 + 0 NA intron (ENSMUSG00000001424.14, intron 16 of 16) protein_coding-intron (ENSMUSG00000001424.14, intron 16 of 23) 4236 ENSMUSG00000049939.6 ENSMUSG00000049939 ENSMUST00000062304 Lrrc4 protein_coding Interval_163655 chr9 23283565 23284584 + 0 NA intron (ENSMUSG00000031963.8, intron 3 of 14) protein_coding-intron (ENSMUSG00000031963.8, intron 3 of 14) 60788 ENSMUSG00000031963.8 ENSMUSG00000031963 ENSMUST00000214050 Bmper protein_coding Interval_67779 chr16 57142391 57142843 + 0 NA TTS (ENSMUSG00000022752.9) protein_coding-TTS (ENSMUSG00000022752.9) -10643 ENSMUSG00000022752.9 ENSMUSG00000022752 ENSMUST00000231901 Tomm70a protein_coding Interval_163121 chr9 15419950 15420649 + 0 NA Intergenic Intergenic 4315 ENSMUSG00000111823.1 ENSMUSG00000111823 ENSMUST00000215651 Gm2517 processed_pseudogene Interval_158069 chr8 78520897 78521528 + 0 NA intron (ENSMUSG00000031684.11, intron 2 of 10) protein_coding-intron (ENSMUSG00000031684.11, intron 2 of 11) 11866 ENSMUSG00000031684.11 ENSMUSG00000031684 ENSMUST00000210132 Slc10a7 protein_coding Interval_118754 chr4 133545351 133546417 + 0 NA exon (ENSMUSG00000028851.6, exon 1 of 8) protein_coding-exon (ENSMUSG00000028851.6, exon 1 of 8) -7492 ENSMUSG00000037583.2 ENSMUSG00000037583 ENSMUST00000042706 Nr0b2 protein_coding Interval_136051 chr6 50333131 50333553 + 0 NA intron (ENSMUSG00000029822.15, intron 3 of 5) protein_coding-intron (ENSMUSG00000029822.15, intron 11 of 21) 18615 ENSMUSG00000029822.15 ENSMUSG00000029822 ENSMUST00000154333 Osbpl3 protein_coding Interval_8999 chr1 153008181 153010880 + 0 NA intron (ENSMUSG00000042751.14, intron 2 of 8) protein_coding-intron (ENSMUSG00000042751.14, intron 1 of 10) -59433 ENSMUSG00000100702.1 ENSMUSG00000100702 ENSMUST00000187136 Gm8976 processed_pseudogene Interval_99013 chr2 156675123 156675643 + 0 NA intron (ENSMUSG00000061689.15, intron 2 of 12) protein_coding-intron (ENSMUSG00000061689.15, intron 2 of 12) -41915 ENSMUSG00000083498.1 ENSMUSG00000083498 ENSMUST00000118255 Gm14172 processed_pseudogene Interval_21723 chr11 3945415 3948135 + 0 NA intron (ENSMUSG00000034493.1, intron 1 of 1) protein_coding-intron (ENSMUSG00000034493.1, intron 1 of 1) -4939 ENSMUSG00000082816.1 ENSMUSG00000082816 ENSMUST00000122352 Gm11953 processed_pseudogene Interval_134215 chr6 23122642 23123190 + 0 NA intron (ENSMUSG00000029695.13, intron 1 of 23) protein_coding-intron (ENSMUSG00000029695.13, intron 1 of 23) 10000 ENSMUSG00000029695.13 ENSMUSG00000029695 ENSMUST00000152280 Aass protein_coding Interval_109984 chr3 152302069 152302905 + 0 NA intron (ENSMUSG00000054942.13, intron 1 of 2) protein_coding-intron (ENSMUSG00000054942.13, intron 7 of 13) -36719 ENSMUSG00000039103.12 ENSMUSG00000039103 ENSMUST00000199752 Nexn protein_coding Interval_89590 chr2 23067821 23069641 + 0 NA promoter-TSS (ENSMUSG00000026781.17) protein_coding-promoter-TSS (ENSMUSG00000026781.17) -341 ENSMUSG00000026781.17 ENSMUSG00000026781 ENSMUST00000227612 Acbd5 protein_coding Interval_150065 chr7 105534119 105534353 + 0 NA Intergenic Intergenic -21455 ENSMUSG00000037049.9 ENSMUSG00000037049 ENSMUST00000211307 Smpd1 protein_coding Interval_111886 chr4 32257007 32258054 + 0 NA intron (ENSMUSG00000087049.1, intron 2 of 3) protein_coding-intron (ENSMUSG00000040270.16, intron 1 of 7) 5769 ENSMUSG00000087049.1 ENSMUSG00000087049 ENSMUST00000133451 Bach2it1 sense_intronic Interval_62891 chr15 97754022 97754563 + 0 NA exon (ENSMUSG00000022469.17, exon 17 of 26) protein_coding-exon (ENSMUSG00000022469.17, exon 17 of 26) -6116 ENSMUSG00000086601.1 ENSMUSG00000086601 ENSMUST00000149373 Rapgef3os1 antisense Interval_17075 chr10 71195456 71195790 + 0 NA intron (ENSMUSG00000112028.1, intron 2 of 2) lincRNA-intron (ENSMUSG00000112028.1, intron 2 of 2) -13571 ENSMUSG00000112189.1 ENSMUSG00000112189 ENSMUST00000219181 C730027H18Rik lincRNA Interval_11789 chr1 185454356 185455769 + 0 NA promoter-TSS (ENSMUSG00000026614.7) protein_coding-promoter-TSS (ENSMUSG00000026614.7) 24 ENSMUSG00000026614.7 ENSMUSG00000026614 ENSMUST00000238677 Slc30a10 protein_coding Interval_28573 chr11 76806313 76806964 + 0 NA intron (ENSMUSG00000020841.5, intron 1 of 1) protein_coding-intron (ENSMUSG00000020841.5, intron 7 of 20) -15616 ENSMUSG00000020841.5 ENSMUSG00000020841 ENSMUST00000132796 Cpd protein_coding Interval_173689 chrX 101978905 101979814 + 0 NA intron (ENSMUSG00000079481.11, intron 1 of 1) protein_coding-intron (ENSMUSG00000079481.11, intron 1 of 7) 17562 ENSMUSG00000079481.11 ENSMUSG00000079481 ENSMUST00000129185 Nhsl2 protein_coding Interval_103181 chr3 36408353 36408589 + 0 NA Intergenic Intergenic -13105 ENSMUSG00000105792.1 ENSMUSG00000105792 ENSMUST00000200194 Gm17887 processed_pseudogene Interval_86115 chr19 36843630 36844638 + 0 NA intron (ENSMUSG00000024811.11, intron 1 of 7) protein_coding-intron (ENSMUSG00000024811.11, intron 1 of 26) -5237 ENSMUSG00000024811.11 ENSMUSG00000024811 ENSMUST00000168654 Tnks2 protein_coding Interval_110854 chr4 9003615 9004699 + 0 NA Intergenic Intergenic 62898 ENSMUSG00000083786.1 ENSMUSG00000083786 ENSMUST00000119493 Rps18-ps2 processed_pseudogene Interval_117706 chr4 125670307 125670510 + 0 NA intron (ENSMUSG00000001985.9, intron 9 of 15) protein_coding-intron (ENSMUSG00000001985.9, intron 9 of 15) 165659 ENSMUSG00000094403.1 ENSMUSG00000094403 ENSMUST00000102081 Mir692-2 miRNA Interval_142839 chr6 146342749 146343491 + 0 NA intron (ENSMUSG00000030287.15, intron 25 of 55) protein_coding-intron (ENSMUSG00000030287.15, intron 26 of 56) -33297 ENSMUSG00000107743.1 ENSMUSG00000107743 ENSMUST00000204247 Gm44087 TEC Interval_132343 chr5 144321352 144322028 + 0 NA intron (ENSMUSG00000038859.7, intron 2 of 13) protein_coding-intron (ENSMUSG00000038859.7, intron 2 of 13) -32783 ENSMUSG00000038859.7 ENSMUSG00000038859 ENSMUST00000129287 Baiap2l1 protein_coding Interval_13574 chr10 19884157 19886110 + 0 NA intron (ENSMUSG00000020003.16, intron 6 of 8) protein_coding-intron (ENSMUSG00000020003.16, intron 7 of 9) -10686 ENSMUSG00000111067.1 ENSMUSG00000111067 ENSMUST00000216902 Gm48714 TEC Interval_9718 chr1 161250021 161251502 + 0 NA promoter-TSS (ENSMUSG00000026701.15) protein_coding-promoter-TSS (ENSMUSG00000026701.15) 401 ENSMUSG00000026701.15 ENSMUSG00000026701 ENSMUST00000130867 Prdx6 protein_coding Interval_98287 chr2 150811383 150811755 + 0 NA intron (ENSMUSG00000033059.7, intron 5 of 6) protein_coding-intron (ENSMUSG00000033059.7, intron 5 of 19) -3753 ENSMUSG00000033059.7 ENSMUSG00000033059 ENSMUST00000135717 Pygb protein_coding Interval_124195 chr5 39755357 39756225 + 0 NA promoter-TSS (ENSMUSG00000051022.7) protein_coding-promoter-TSS (ENSMUSG00000051022.7) -42423 ENSMUSG00000083261.4 ENSMUSG00000083261 ENSMUST00000119884 Gm7816 processed_pseudogene Interval_74320 chr17 48931373 48932876 + 0 NA promoter-TSS (ENSMUSG00000040490.4) protein_coding-promoter-TSS (ENSMUSG00000040490.4) -255 ENSMUSG00000040490.4 ENSMUSG00000040490 ENSMUST00000046254 Lrfn2 protein_coding Interval_15986 chr10 59936167 59936413 + 0 NA Intergenic Intergenic 15544 ENSMUSG00000020108.4 ENSMUSG00000020108 ENSMUST00000020308 Ddit4 protein_coding Interval_84653 chr19 14676650 14677522 + 0 NA Intergenic Intergenic 18419 ENSMUSG00000103488.1 ENSMUSG00000103488 ENSMUST00000193515 Gm37997 TEC Interval_121902 chr5 9356661 9357044 + 0 NA intron (ENSMUSG00000056004.16, intron 1 of 19) protein_coding-intron (ENSMUSG00000056004.16, intron 1 of 21) 3093 ENSMUSG00000086115.1 ENSMUSG00000086115 ENSMUST00000132957 Gm15733 processed_pseudogene Interval_71918 chr17 27000176 27002165 + 0 NA intron (ENSMUSG00000117819.1, intron 2 of 8) protein_coding-intron (ENSMUSG00000117819.1, intron 2 of 8) -22544 ENSMUSG00000118007.1 ENSMUSG00000118007 ENSMUST00000237254 Gm50254 antisense Interval_60763 chr15 76607043 76607969 + 0 NA promoter-TSS (ENSMUSG00000034022.8) protein_coding-promoter-TSS (ENSMUSG00000034022.8) -5522 ENSMUSG00000034022.8 ENSMUSG00000034022 ENSMUST00000229447 Cpsf1 protein_coding Interval_94387 chr2 90674561 90674801 + 0 NA Intergenic Intergenic -10490 ENSMUSG00000051329.13 ENSMUSG00000051329 ENSMUST00000126503 Nup160 protein_coding Interval_105591 chr3 87960398 87961168 + 0 NA Intergenic Intergenic -7403 ENSMUSG00000103792.1 ENSMUSG00000103792 ENSMUST00000193773 Gm3745 processed_pseudogene Interval_28365 chr11 75399487 75400482 + 0 NA intron (ENSMUSG00000018809.2, intron 1 of 1) protein_coding-intron (ENSMUSG00000018809.2, intron 6 of 10) 18012 ENSMUSG00000000753.15 ENSMUSG00000000753 ENSMUST00000155009 Serpinf1 protein_coding Interval_127795 chr5 107887866 107888256 + 0 NA Intergenic Intergenic -12813 ENSMUSG00000058558.12 ENSMUSG00000058558 ENSMUST00000151767 Rpl5 protein_coding Interval_117734 chr4 125912095 125913071 + 0 NA intron (ENSMUSG00000085562.7, intron 2 of 5) lincRNA-intron (ENSMUSG00000085562.7, intron 2 of 5) 9834 ENSMUSG00000085562.7 ENSMUSG00000085562 ENSMUST00000144539 2610028E06Rik lincRNA Interval_13715 chr10 21341540 21342858 + 0 NA promoter-TSS (ENSMUSG00000112654.1) antisense-promoter-TSS (ENSMUSG00000112654.1) -142 ENSMUSG00000112654.1 ENSMUSG00000112654 ENSMUST00000218108 4930455C13Rik antisense Interval_172094 chrX 7420836 7421279 + 0 NA promoter-TSS (ENSMUSG00000063018.6) processed_transcript-promoter-TSS (ENSMUSG00000063018.6) 28 ENSMUSG00000063018.6 ENSMUSG00000063018 ENSMUST00000150671 2010204K13Rik processed_transcript Interval_172992 chrX 60200520 60201266 + 0 NA Intergenic Intergenic -53193 ENSMUSG00000031139.16 ENSMUSG00000031139 ENSMUST00000033478 Mcf2 protein_coding Interval_94555 chr2 92191939 92192646 + 0 NA TTS (ENSMUSG00000088639.1) miRNA-TTS (ENSMUSG00000088639.1) 315 ENSMUSG00000088639.1 ENSMUSG00000088639 ENSMUST00000158014 Mir1955 miRNA Interval_162857 chr9 10464760 10465461 + 0 NA intron (ENSMUSG00000039488.15, intron 2 of 20) protein_coding-intron (ENSMUSG00000039488.15, intron 2 of 24) -10825 ENSMUSG00000111648.1 ENSMUSG00000111648 ENSMUST00000217614 Gm46103 processed_pseudogene Interval_153145 chr7 141633777 141635140 + 0 NA exon (ENSMUSG00000048191.15, exon 33 of 34) protein_coding-exon (ENSMUSG00000048191.15, exon 33 of 34) 13757 ENSMUSG00000098759.1 ENSMUSG00000098759 ENSMUST00000184158 Mir7063 miRNA Interval_85904 chr19 32874175 32874456 + 0 NA Intergenic Intergenic 63090 ENSMUSG00000013663.7 ENSMUSG00000013663 ENSMUST00000154806 Pten protein_coding Interval_164219 chr9 32685410 32686542 + 0 NA intron (ENSMUSG00000032035.16, intron 3 of 9) protein_coding-intron (ENSMUSG00000032035.16, intron 3 of 3) 25195 ENSMUSG00000098843.1 ENSMUSG00000098843 ENSMUST00000183616 Gm27240 antisense Interval_35699 chr12 28191290 28191479 + 0 NA Intergenic Intergenic 129674 ENSMUSG00000113939.1 ENSMUSG00000113939 ENSMUST00000222289 Gm47871 lincRNA Interval_66701 chr16 36469074 36469687 + 0 NA Intergenic Intergenic 4461 ENSMUSG00000116917.1 ENSMUSG00000116917 ENSMUST00000231458 Gm49653 TEC Interval_159048 chr8 89051769 89054114 + 0 NA Intergenic Intergenic -8779 ENSMUSG00000031665.7 ENSMUSG00000031665 ENSMUST00000034090 Sall1 protein_coding Interval_28534 chr11 76570513 76572017 + 0 NA exon (ENSMUSG00000017631.19, exon 1 of 23) protein_coding-exon (ENSMUSG00000017631.19, exon 1 of 23) -30054 ENSMUSG00000024205.7 ENSMUSG00000024205 ENSMUST00000136893 Rpl36-ps2 processed_pseudogene Interval_87927 chr19 57152372 57152838 + 0 NA intron (ENSMUSG00000025085.16, intron 3 of 20) protein_coding-intron (ENSMUSG00000025085.16, intron 3 of 25) -121355 ENSMUSG00000117684.1 ENSMUSG00000117684 ENSMUST00000237596 4930449E18Rik antisense Interval_2653 chr1 42952606 42953809 + 0 NA promoter-TSS (ENSMUSG00000041907.9) protein_coding-promoter-TSS (ENSMUSG00000041907.9) 335 ENSMUSG00000041907.9 ENSMUSG00000041907 ENSMUST00000114761 Gpr45 protein_coding Interval_158118 chr8 78881275 78882126 + 0 NA Intergenic Intergenic -11832 ENSMUSG00000069986.4 ENSMUSG00000069986 ENSMUST00000093411 Gm8054 processed_pseudogene Interval_84695 chr19 15398193 15398520 + 0 NA Intergenic Intergenic -281648 ENSMUSG00000094850.1 ENSMUSG00000094850 ENSMUST00000083389 Gm24319 snRNA Interval_21561 chr10 129911263 129912298 + 0 NA exon (ENSMUSG00000063715.2, exon 1 of 1) protein_coding-exon (ENSMUSG00000063715.2, exon 1 of 1) 3765 ENSMUSG00000063715.2 ENSMUSG00000063715 ENSMUST00000071605 Olfr816 protein_coding Interval_58608 chr15 36536909 36537225 + 0 NA TTS (ENSMUSG00000013611.14) protein_coding-TTS (ENSMUSG00000013611.14) 8620 ENSMUSG00000013611.14 ENSMUSG00000013611 ENSMUST00000160936 Snx31 protein_coding Interval_12083 chr1 189645238 189645574 + 0 NA intron (ENSMUSG00000026605.14, intron 17 of 17) protein_coding-intron (ENSMUSG00000026605.14, intron 2 of 2) -5172 ENSMUSG00000103087.1 ENSMUSG00000103087 ENSMUST00000192679 Gm38122 TEC Interval_51574 chr14 30434073 30434243 + 0 NA intron (ENSMUSG00000015968.18, intron 1 of 1) protein_coding-intron (ENSMUSG00000015968.18, intron 1 of 46) 10888 ENSMUSG00000114966.1 ENSMUSG00000114966 ENSMUST00000224520 Gm18681 processed_pseudogene Interval_161728 chr8 122389496 122389955 + 0 NA TTS (ENSMUSG00000017478.15) protein_coding-TTS (ENSMUSG00000017478.15) 13077 ENSMUSG00000017478.15 ENSMUSG00000017478 ENSMUST00000177049 Zc3h18 protein_coding Interval_130388 chr5 127227717 127229307 + 0 NA Intergenic Intergenic -27415 ENSMUSG00000104778.1 ENSMUSG00000104778 ENSMUST00000197873 Gm43476 lincRNA Interval_44274 chr13 43261160 43261888 + 0 NA intron (ENSMUSG00000051335.6, intron 1 of 1) protein_coding-intron (ENSMUSG00000051335.6, intron 1 of 1) 41881 ENSMUSG00000051335.6 ENSMUSG00000051335 ENSMUST00000222779 Gfod1 protein_coding Interval_171346 chr9 116567659 116568183 + 0 NA Intergenic Intergenic 236753 ENSMUSG00000110752.1 ENSMUSG00000110752 ENSMUST00000217456 D730003K21Rik lincRNA Interval_169813 chr9 102066960 102067388 + 0 NA intron (ENSMUSG00000032537.15, intron 3 of 4) protein_coding-intron (ENSMUSG00000032537.15, intron 3 of 15) -10617 ENSMUSG00000104041.1 ENSMUSG00000104041 ENSMUST00000194763 Gm37562 TEC Interval_87082 chr19 46016449 46017469 + 0 NA Intergenic Intergenic 13451 ENSMUSG00000074811.3 ENSMUSG00000074811 ENSMUST00000099393 Hps6 protein_coding Interval_162344 chr8 127295911 127297159 + 0 NA intron (ENSMUSG00000025812.18, intron 3 of 15) protein_coding-intron (ENSMUSG00000025812.18, intron 3 of 23) 125131 ENSMUSG00000025812.18 ENSMUSG00000025812 ENSMUST00000159940 Pard3 protein_coding Interval_169245 chr9 95795604 95796567 + 0 NA intron (ENSMUSG00000049493.13, intron 1 of 15) protein_coding-intron (ENSMUSG00000049493.13, intron 1 of 15) -45727 ENSMUSG00000032839.13 ENSMUSG00000032839 ENSMUST00000190205 Trpc1 protein_coding Interval_140231 chr6 115696846 115698948 + 0 NA Intergenic Intergenic 21929 ENSMUSG00000107994.1 ENSMUSG00000107994 ENSMUST00000203121 D830050J10Rik bidirectional_promoter_lncRNA Interval_148356 chr7 80732550 80733530 + 0 NA intron (ENSMUSG00000030536.10, intron 26 of 37) protein_coding-intron (ENSMUSG00000030536.10, intron 26 of 37) -18782 ENSMUSG00000108321.1 ENSMUSG00000108321 ENSMUST00000205608 Gm44649 antisense Interval_24360 chr11 32661816 32663078 + 0 NA intron (ENSMUSG00000020271.17, intron 2 of 4) protein_coding-intron (ENSMUSG00000020271.17, intron 1 of 13) 19543 ENSMUSG00000020271.17 ENSMUSG00000020271 ENSMUST00000143290 Fbxw11 protein_coding Interval_80057 chr18 37005102 37007311 + 0 NA exon (ENSMUSG00000007440.10, exon 1 of 4) protein_coding-exon (ENSMUSG00000007440.10, exon 1 of 4) 1003 ENSMUSG00000007440.10 ENSMUSG00000007440 ENSMUST00000115658 Pcdha11 protein_coding Interval_153226 chr7 142610592 142611877 + 0 NA intron (ENSMUSG00000110125.1, intron 2 of 3) lincRNA-intron (ENSMUSG00000110125.1, intron 2 of 3) 19490 ENSMUSG00000110125.1 ENSMUSG00000110125 ENSMUST00000210835 Gm33148 lincRNA Interval_157020 chr8 64554650 64554949 + 0 NA Intergenic Intergenic -40358 ENSMUSG00000076042.1 ENSMUSG00000076042 ENSMUST00000102088 Mir710 miRNA Interval_64792 chr16 15838193 15838727 + 0 NA intron (ENSMUSG00000022672.8, intron 84 of 85) protein_coding-intron (ENSMUSG00000022672.8, intron 84 of 85) 24850 ENSMUSG00000022671.13 ENSMUSG00000022671 ENSMUST00000117136 Mzt2 protein_coding Interval_68780 chr16 86187299 86188405 + 0 NA Intergenic Intergenic -37176 ENSMUSG00000116556.1 ENSMUSG00000116556 ENSMUST00000231250 1700007H22Rik lincRNA Interval_71939 chr17 27115847 27116880 + 0 NA intron (ENSMUSG00000042644.9, intron 49 of 57) protein_coding-intron (ENSMUSG00000042644.9, intron 49 of 57) 10186 ENSMUSG00000042644.9 ENSMUSG00000042644 ENSMUST00000235521 Itpr3 protein_coding Interval_93391 chr2 72716374 72716810 + 0 NA intron (ENSMUSG00000085252.1, intron 4 of 6) lincRNA-intron (ENSMUSG00000085252.1, intron 4 of 6) 13082 ENSMUSG00000085252.1 ENSMUSG00000085252 ENSMUST00000124829 8430437L04Rik lincRNA Interval_98969 chr2 156400977 156402289 + 0 NA Intergenic Intergenic -8654 ENSMUSG00000102869.2 ENSMUSG00000102869 ENSMUST00000192590 2900097C17Rik lincRNA Interval_56254 chr14 115040261 115042603 + 0 NA Intergenic Intergenic -1447 ENSMUSG00000089726.2 ENSMUSG00000089726 ENSMUST00000134140 Mir17hg lincRNA Interval_137016 chr6 66457445 66458452 + 0 NA intron (ENSMUSG00000107479.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000107479.1, intron 1 of 1) 7751 ENSMUSG00000107479.1 ENSMUSG00000107479 ENSMUST00000203449 2610300M13Rik lincRNA Interval_68706 chr16 84845250 84845496 + 0 NA intron (ENSMUSG00000008976.16, intron 4 of 9) protein_coding-intron (ENSMUSG00000008976.16, intron 4 of 9) -10368 ENSMUSG00000022890.13 ENSMUSG00000022890 ENSMUST00000148787 Atp5j protein_coding Interval_8739 chr1 150269396 150269817 + 0 NA promoter-TSS (ENSMUSG00000100690.1) processed_pseudogene-promoter-TSS (ENSMUSG00000100690.1) -345 ENSMUSG00000100690.1 ENSMUSG00000100690 ENSMUST00000191094 Gm4322 processed_pseudogene Interval_36601 chr12 51214420 51214655 + 0 NA Intergenic Intergenic -79835 ENSMUSG00000112926.1 ENSMUSG00000112926 ENSMUST00000218047 Gm7172 processed_pseudogene Interval_124768 chr5 53747659 53748607 + 0 NA Intergenic Intergenic -40573 ENSMUSG00000029193.7 ENSMUSG00000029193 ENSMUST00000202946 Cckar protein_coding Interval_42296 chr13 11887704 11888009 + 0 NA intron (ENSMUSG00000021313.16, intron 5 of 104) protein_coding-intron (ENSMUSG00000021313.16, intron 5 of 104) -51702 ENSMUSG00000098110.1 ENSMUSG00000098110 ENSMUST00000182176 Gm26956 processed_pseudogene Interval_44140 chr13 41160483 41160661 + 0 NA intron (ENSMUSG00000038651.15, intron 3 of 5) protein_coding-intron (ENSMUSG00000038651.15, intron 23 of 28) 7184 ENSMUSG00000038651.15 ENSMUSG00000038651 ENSMUST00000145810 Sycp2l protein_coding Interval_63852 chr16 3993317 3993554 + 0 NA intron (ENSMUSG00000039738.16, intron 2 of 13) protein_coding-intron (ENSMUSG00000039738.16, intron 4 of 14) 10335 ENSMUSG00000039738.16 ENSMUSG00000039738 ENSMUST00000171658 Slx4 protein_coding Interval_48648 chr13 100826175 100826398 + 0 NA intron (ENSMUSG00000021629.10, intron 3 of 14) protein_coding-intron (ENSMUSG00000021629.10, intron 3 of 15) 7054 ENSMUSG00000021629.10 ENSMUSG00000021629 ENSMUST00000224177 Slc30a5 protein_coding Interval_72538 chr17 30583775 30584035 + 0 NA intron (ENSMUSG00000118341.1, intron 1 of 6) processed_transcript-intron (ENSMUSG00000118341.1, intron 1 of 6) 7437 ENSMUSG00000117725.1 ENSMUSG00000117725 ENSMUST00000237645 Gm50240 antisense Interval_44531 chr13 45806449 45808075 + 0 NA intron (ENSMUSG00000046876.16, intron 2 of 2) protein_coding-intron (ENSMUSG00000046876.16, intron 3 of 7) 57690 ENSMUSG00000114131.1 ENSMUSG00000114131 ENSMUST00000221126 Gm47460 antisense Interval_12581 chr10 3538353 3538565 + 0 NA Intergenic Intergenic -1829 ENSMUSG00000019762.4 ENSMUSG00000019762 ENSMUST00000141745 Iyd protein_coding Interval_150296 chr7 109424602 109425330 + 0 NA intron (ENSMUSG00000031027.15, intron 1 of 13) protein_coding-intron (ENSMUSG00000031027.15, intron 1 of 12) -13652 ENSMUSG00000085407.1 ENSMUSG00000085407 ENSMUST00000143715 1700095J03Rik antisense Interval_66308 chr16 33048105 33049093 + 0 NA TTS (ENSMUSG00000035578.16) protein_coding-TTS (ENSMUSG00000035578.16) 1271 ENSMUSG00000035578.16 ENSMUSG00000035578 ENSMUST00000126793 Iqcg protein_coding Interval_6373 chr1 106511479 106512395 + 0 NA Intergenic Intergenic -30006 ENSMUSG00000054006.14 ENSMUSG00000054006 ENSMUST00000149909 D630008O14Rik antisense Interval_91613 chr2 44586649 44587394 + 0 NA intron (ENSMUSG00000036890.13, intron 5 of 5) protein_coding-intron (ENSMUSG00000036890.13, intron 4 of 7) 158086 ENSMUSG00000088124.1 ENSMUSG00000088124 ENSMUST00000157499 Gm22867 snRNA Interval_113829 chr4 59188807 59190131 + 0 NA promoter-TSS (ENSMUSG00000028381.8) protein_coding-promoter-TSS (ENSMUSG00000028381.8) -23187 ENSMUSG00000028381.8 ENSMUSG00000028381 ENSMUST00000155153 Ugcg protein_coding Interval_128230 chr5 111884174 111885173 + 0 NA Intergenic Intergenic 59562 ENSMUSG00000106060.1 ENSMUSG00000106060 ENSMUST00000197648 Gm42488 lincRNA Interval_112094 chr4 34655558 34656520 + 0 NA exon (ENSMUSG00000028292.14, exon 15 of 20) protein_coding-exon (ENSMUSG00000028292.14, exon 15 of 20) -27840 ENSMUSG00000088338.1 ENSMUSG00000088338 ENSMUST00000157713 Gm22849 misc_RNA Interval_28716 chr11 77890869 77891113 + 0 NA intron (ENSMUSG00000017453.4, intron 2 of 7) protein_coding-intron (ENSMUSG00000017453.4, intron 2 of 7) -6447 ENSMUSG00000017453.4 ENSMUSG00000017453 ENSMUST00000155401 Pipox protein_coding Interval_57510 chr15 11978757 11979937 + 0 NA Intergenic Intergenic 12587 ENSMUSG00000099349.7 ENSMUSG00000099349 ENSMUST00000190000 1700047G03Rik lincRNA Interval_89876 chr2 26153436 26154673 + 0 NA Intergenic Intergenic -15252 ENSMUSG00000087679.2 ENSMUSG00000087679 ENSMUST00000163836 Tmem250-ps protein_coding Interval_128823 chr5 115469998 115471387 + 0 NA intron (ENSMUSG00000029522.12, intron 1 of 2) protein_coding-intron (ENSMUSG00000029522.12, intron 1 of 3) 4426 ENSMUSG00000029522.12 ENSMUSG00000029522 ENSMUST00000125568 Pla2g1b protein_coding Interval_57488 chr15 11717956 11719475 + 0 NA Intergenic Intergenic -15012 ENSMUSG00000115585.1 ENSMUSG00000115585 ENSMUST00000228108 Gm41271 processed_transcript Interval_32160 chr11 105813076 105813267 + 0 NA intron (ENSMUSG00000053580.16, intron 8 of 25) protein_coding-intron (ENSMUSG00000053580.16, intron 8 of 25) 39653 ENSMUSG00000083465.1 ENSMUSG00000083465 ENSMUST00000117842 Gm11652 processed_pseudogene Interval_126633 chr5 91307094 91308194 + 0 NA Intergenic Intergenic -24223 ENSMUSG00000107198.1 ENSMUSG00000107198 ENSMUST00000200707 Gm19619 lincRNA Interval_10039 chr1 165289977 165290173 + 0 NA Intergenic Intergenic -5714 ENSMUSG00000040836.15 ENSMUSG00000040836 ENSMUST00000111450 Gpr161 protein_coding Interval_140676 chr6 120483078 120483874 + 0 NA exon (ENSMUSG00000002897.5, exon 13 of 13) protein_coding-exon (ENSMUSG00000002897.5, exon 13 of 13) 10331 ENSMUSG00000094626.1 ENSMUSG00000094626 ENSMUST00000178687 Tmem121b protein_coding Interval_130073 chr5 124089542 124089917 + 0 NA exon (ENSMUSG00000029408.13, exon 2 of 12) protein_coding-exon (ENSMUSG00000029408.13, exon 2 of 12) -10598 ENSMUSG00000029408.13 ENSMUSG00000029408 ENSMUST00000126970 Abcb9 protein_coding Interval_28495 chr11 76346068 76346409 + 0 NA intron (ENSMUSG00000020844.6, intron 1 of 7) protein_coding-intron (ENSMUSG00000020844.6, intron 1 of 7) 52830 ENSMUSG00000020844.6 ENSMUSG00000020844 ENSMUST00000131472 Nxn protein_coding Interval_108610 chr3 129551415 129552754 + 0 NA promoter-TSS (ENSMUSG00000041220.10) protein_coding-promoter-TSS (ENSMUSG00000041220.10) 13943 ENSMUSG00000106092.1 ENSMUSG00000106092 ENSMUST00000200283 Gm43072 TEC Interval_79283 chr18 29869057 29869586 + 0 NA Intergenic Intergenic -211725 ENSMUSG00000117626.1 ENSMUSG00000117626 ENSMUST00000234976 Gm7917 processed_pseudogene Interval_137504 chr6 72786986 72789757 + 0 NA intron (ENSMUSG00000055799.13, intron 1 of 5) protein_coding-intron (ENSMUSG00000055799.13, intron 2 of 11) -36457 ENSMUSG00000104501.1 ENSMUSG00000104501 ENSMUST00000193564 Gm37736 TEC Interval_142496 chr6 142874367 142874645 + 0 NA intron (ENSMUSG00000030283.7, intron 3 of 4) protein_coding-intron (ENSMUSG00000030283.7, intron 3 of 4) 60121 ENSMUSG00000072683.3 ENSMUSG00000072683 ENSMUST00000159599 Gm7457 processed_transcript Interval_67275 chr16 45256599 45257228 + 0 NA intron (ENSMUSG00000052013.15, intron 1 of 1) protein_coding-intron (ENSMUSG00000052013.15, intron 1 of 1) 6542 ENSMUSG00000052013.15 ENSMUSG00000052013 ENSMUST00000231703 Btla protein_coding Interval_9909 chr1 164018296 164022330 + 0 NA Intergenic Intergenic -11647 ENSMUSG00000103960.1 ENSMUSG00000103960 ENSMUST00000195691 Gm37119 processed_pseudogene Interval_87267 chr19 47314026 47315124 + 0 NA exon (ENSMUSG00000053617.12, exon 1 of 8) protein_coding-exon (ENSMUSG00000053617.12, exon 1 of 8) -40986 ENSMUSG00000098786.1 ENSMUSG00000098786 ENSMUST00000183658 Mir6995 miRNA Interval_136501 chr6 54971878 54972790 + 0 NA promoter-TSS (ENSMUSG00000038058.14) protein_coding-promoter-TSS (ENSMUSG00000038058.14) -2317 ENSMUSG00000077501.1 ENSMUSG00000077501 ENSMUST00000104313 Gm24230 snoRNA Interval_960 chr1 13472603 13472814 + 0 NA Intergenic Intergenic -65053 ENSMUSG00000101171.1 ENSMUSG00000101171 ENSMUST00000187246 Gm7593 processed_pseudogene Interval_171255 chr9 115698262 115698529 + 0 NA Intergenic Intergenic 17652 ENSMUSG00000110905.1 ENSMUSG00000110905 ENSMUST00000215982 Gm48007 lincRNA Interval_100286 chr2 168167054 168167993 + 0 NA intron (ENSMUSG00000118526.2, intron 7 of 7) unitary_pseudogene-intron (ENSMUSG00000118526.2, intron 7 of 7) 10729 ENSMUSG00000092923.1 ENSMUSG00000092923 ENSMUST00000175182 Gm24561 miRNA Interval_83624 chr19 3291648 3292622 + 0 NA TTS (ENSMUSG00000024829.12) protein_coding-TTS (ENSMUSG00000024829.12) 3215 ENSMUSG00000099261.1 ENSMUSG00000099261 ENSMUST00000185105 Mir6984 miRNA Interval_173129 chrX 73038686 73040116 + 0 NA Intergenic Intergenic -3298 ENSMUSG00000050424.9 ENSMUSG00000050424 ENSMUST00000051569 Pnma5 protein_coding Interval_50048 chr13 120194659 120196110 + 0 NA exon (ENSMUSG00000114398.1, exon 1 of 1) processed_pseudogene-exon (ENSMUSG00000114398.1, exon 1 of 1) 870 ENSMUSG00000114398.1 ENSMUSG00000114398 ENSMUST00000225106 Gm20763 processed_pseudogene Interval_44420 chr13 44750817 44752412 + 0 NA intron (ENSMUSG00000038518.15, intron 1 of 3) protein_coding-intron (ENSMUSG00000038518.15, intron 2 of 18) 20244 ENSMUSG00000038518.15 ENSMUSG00000038518 ENSMUST00000173003 Jarid2 protein_coding Interval_51996 chr14 34494016 34494527 + 0 NA intron (ENSMUSG00000021796.15, intron 1 of 4) protein_coding-intron (ENSMUSG00000021796.15, intron 1 of 12) -7444 ENSMUSG00000090779.1 ENSMUSG00000090779 ENSMUST00000171248 Gm17110 antisense Interval_35742 chr12 28796925 28797750 + 0 NA intron (ENSMUSG00000036613.8, intron 4 of 9) protein_coding-intron (ENSMUSG00000036613.8, intron 4 of 9) 7668 ENSMUSG00000114081.1 ENSMUSG00000114081 ENSMUST00000220880 Gm48904 TEC Interval_57168 chr15 7118170 7118817 + 0 NA intron (ENSMUSG00000054263.12, intron 1 of 4) protein_coding-intron (ENSMUSG00000054263.12, intron 1 of 4) 27879 ENSMUSG00000054263.12 ENSMUSG00000054263 ENSMUST00000171588 Lifr protein_coding Interval_12498 chr1 194419430 194420079 + 0 NA Intergenic Intergenic -196995 ENSMUSG00000103692.1 ENSMUSG00000103692 ENSMUST00000193395 4930503O07Rik lincRNA Interval_73690 chr17 42826378 42826778 + 0 NA exon (ENSMUSG00000061665.7, exon 1 of 1) protein_coding-exon (ENSMUSG00000061665.7, exon 1 of 1) 4452 ENSMUSG00000061665.7 ENSMUSG00000061665 ENSMUST00000233626 Cd2ap protein_coding Interval_164874 chr9 42693206 42694271 + 0 NA intron (ENSMUSG00000032017.14, intron 3 of 20) protein_coding-intron (ENSMUSG00000032017.14, intron 1 of 18) 168391 ENSMUSG00000076355.2 ENSMUSG00000076355 ENSMUST00000102400 Gm27509 miRNA Interval_110298 chr3 156190949 156191178 + 0 NA Intergenic Intergenic -73523 ENSMUSG00000104573.1 ENSMUSG00000104573 ENSMUST00000199214 Gm42886 processed_pseudogene Interval_133517 chr6 6113154 6114391 + 0 NA intron (ENSMUSG00000015112.15, intron 9 of 17) protein_coding-intron (ENSMUSG00000015112.15, intron 9 of 17) 60179 ENSMUSG00000015112.15 ENSMUSG00000015112 ENSMUST00000177698 Slc25a13 protein_coding Interval_154111 chr8 12792756 12792997 + 0 NA intron (ENSMUSG00000031441.15, intron 1 of 27) protein_coding-intron (ENSMUSG00000031441.15, intron 1 of 29) 39043 ENSMUSG00000084780.7 ENSMUSG00000084780 ENSMUST00000135138 Gm15350 antisense Interval_162238 chr8 126357633 126358495 + 0 NA intron (ENSMUSG00000057060.8, intron 3 of 7) protein_coding-intron (ENSMUSG00000057060.8, intron 2 of 6) -64464 ENSMUSG00000051671.7 ENSMUSG00000051671 ENSMUST00000211868 Coa6 protein_coding Interval_38204 chr12 76352523 76352904 + 0 NA intron (ENSMUSG00000056459.14, intron 2 of 2) protein_coding-intron (ENSMUSG00000056459.14, intron 2 of 2) -7332 ENSMUSG00000112096.1 ENSMUSG00000112096 ENSMUST00000220077 A430103D13Rik TEC Interval_20288 chr10 116678894 116680117 + 0 NA TTS (ENSMUSG00000097104.1) lincRNA-TTS (ENSMUSG00000097104.1) 4914 ENSMUSG00000097104.1 ENSMUSG00000097104 ENSMUST00000181656 Gm26579 lincRNA Interval_153171 chr7 142045165 142045889 + 0 NA intron (ENSMUSG00000025147.7, intron 1 of 5) protein_coding-intron (ENSMUSG00000025147.7, intron 1 of 4) 7548 ENSMUSG00000109638.1 ENSMUSG00000109638 ENSMUST00000210243 Gm45630 TEC Interval_113695 chr4 57694256 57694690 + 0 NA intron (ENSMUSG00000089945.13, intron 4 of 8) protein_coding-intron (ENSMUSG00000089945.13, intron 5 of 10) 56650 ENSMUSG00000089945.13 ENSMUSG00000089945 ENSMUST00000150412 Pakap protein_coding Interval_54136 chr14 65613074 65613242 + 0 NA intron (ENSMUSG00000061356.13, intron 6 of 18) protein_coding-intron (ENSMUSG00000061356.13, intron 6 of 18) 14612 ENSMUSG00000061356.13 ENSMUSG00000061356 ENSMUST00000079469 Nuggc protein_coding Interval_146601 chr7 47313422 47314027 + 0 NA Intergenic Intergenic -3429 ENSMUSG00000099560.1 ENSMUSG00000099560 ENSMUST00000187741 Mrgprx3-ps unprocessed_pseudogene Interval_19283 chr10 96094319 96095257 + 0 NA intron (ENSMUSG00000117008.1, intron 2 of 13) unitary_pseudogene-intron (ENSMUSG00000117008.1, intron 2 of 13) 1217 ENSMUSG00000117008.1 ENSMUSG00000117008 ENSMUST00000233655 Gm49817 unitary_pseudogene Interval_59647 chr15 57508174 57510114 + 0 NA Intergenic Intergenic -20273 ENSMUSG00000115629.1 ENSMUSG00000115629 ENSMUST00000227877 Gm49235 processed_pseudogene Interval_78641 chr18 16133826 16134358 + 0 NA Intergenic Intergenic 10358 ENSMUSG00000117532.1 ENSMUSG00000117532 ENSMUST00000234268 Gm50076 lincRNA Interval_116949 chr4 118389098 118389637 + 0 NA intron (ENSMUSG00000033253.18, intron 2 of 2) protein_coding-intron (ENSMUSG00000033253.18, intron 19 of 71) -15093 ENSMUSG00000033253.18 ENSMUSG00000033253 ENSMUST00000136737 Szt2 protein_coding Interval_59190 chr15 47269483 47270793 + 0 NA Intergenic Intergenic -151777 ENSMUSG00000115534.1 ENSMUSG00000115534 ENSMUST00000227510 Gm7508 processed_pseudogene Interval_150908 chr7 116286007 116287620 + 0 NA intron (ENSMUSG00000045659.18, intron 3 of 18) protein_coding-intron (ENSMUSG00000045659.18, intron 3 of 26) -4070 ENSMUSG00000108650.1 ENSMUSG00000108650 ENSMUST00000205675 Gm44867 sense_intronic Interval_88313 chr2 3629868 3630184 + 0 NA intron (ENSMUSG00000026655.15, intron 1 of 4) protein_coding-intron (ENSMUSG00000026655.15, intron 1 of 4) 50564 ENSMUSG00000080703.2 ENSMUSG00000080703 ENSMUST00000118615 Gm13183 processed_pseudogene Interval_107295 chr3 105529389 105529886 + 0 NA intron (ENSMUSG00000040896.16, intron 2 of 4) protein_coding-intron (ENSMUSG00000040896.16, intron 1 of 6) 26730 ENSMUSG00000105753.1 ENSMUSG00000105753 ENSMUST00000200070 Gm43847 sense_intronic Interval_130879 chr5 133009344 133009558 + 0 NA Intergenic Intergenic 207773 ENSMUSG00000088123.1 ENSMUSG00000088123 ENSMUST00000157498 Gm25722 misc_RNA Interval_173838 chrX 105896439 105896938 + 0 NA intron (ENSMUSG00000031229.16, intron 1 of 6) protein_coding-intron (ENSMUSG00000031229.16, intron 2 of 5) -21383 ENSMUSG00000031229.16 ENSMUSG00000031229 ENSMUST00000126345 Atrx protein_coding Interval_98748 chr2 154656718 154657600 + 0 NA exon (ENSMUSG00000038467.15, exon 1 of 5) protein_coding-exon (ENSMUSG00000038467.15, exon 1 of 5) 5454 ENSMUSG00000038467.15 ENSMUSG00000038467 ENSMUST00000136788 Chmp4b protein_coding Interval_143871 chr7 16860051 16860662 + 0 NA intron (ENSMUSG00000041187.16, intron 15 of 18) protein_coding-intron (ENSMUSG00000041187.16, intron 14 of 17) -2991 ENSMUSG00000041187.16 ENSMUSG00000041187 ENSMUST00000205798 Prkd2 protein_coding Interval_157035 chr8 64705909 64706224 + 0 NA intron (ENSMUSG00000110368.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000110368.1, intron 1 of 1) 5010 ENSMUSG00000110368.1 ENSMUSG00000110368 ENSMUST00000210776 Gm45518 lincRNA Interval_39932 chr12 99873190 99874890 + 0 NA intron (ENSMUSG00000021176.6, intron 4 of 6) protein_coding-intron (ENSMUSG00000021176.6, intron 3 of 5) 10372 ENSMUSG00000021176.6 ENSMUSG00000021176 ENSMUST00000221197 Efcab11 protein_coding Interval_161338 chr8 119832988 119833255 + 0 NA intron (ENSMUSG00000031827.13, intron 2 of 3) protein_coding-intron (ENSMUSG00000031827.13, intron 2 of 3) -10404 ENSMUSG00000031827.13 ENSMUSG00000031827 ENSMUST00000212676 Cotl1 protein_coding Interval_72023 chr17 27616777 27617274 + 0 NA intron (ENSMUSG00000117338.1, intron 5 of 8) protein_coding-intron (ENSMUSG00000024213.14, intron 1 of 4) -6472 ENSMUSG00000116571.1 ENSMUSG00000116571 ENSMUST00000231767 Gm49741 bidirectional_promoter_lncRNA Interval_15382 chr10 45279213 45280021 + 0 NA intron (ENSMUSG00000019848.14, intron 2 of 2) protein_coding-intron (ENSMUSG00000019848.14, intron 2 of 2) 9807 ENSMUSG00000090088.1 ENSMUSG00000090088 ENSMUST00000162062 Gm15934 antisense Interval_156015 chr8 42242060 42242940 + 0 NA Intergenic Intergenic -4411 ENSMUSG00000053038.8 ENSMUSG00000053038 ENSMUST00000065243 Gm6180 processed_pseudogene Interval_74693 chr17 55995984 55996576 + 0 NA promoter-TSS (ENSMUSG00000011589.9) protein_coding-promoter-TSS (ENSMUSG00000011589.9) 870 ENSMUSG00000011589.9 ENSMUSG00000011589 ENSMUST00000233361 Fsd1 protein_coding Interval_53434 chr14 57412752 57413424 + 0 NA Intergenic Intergenic -14592 ENSMUSG00000021947.11 ENSMUSG00000021947 ENSMUST00000225765 Cryl1 protein_coding Interval_171347 chr9 116620488 116621173 + 0 NA intron (ENSMUSG00000039607.17, intron 6 of 7) protein_coding-intron (ENSMUSG00000039607.17, intron 11 of 12) 289662 ENSMUSG00000110752.1 ENSMUSG00000110752 ENSMUST00000217456 D730003K21Rik lincRNA Interval_87765 chr19 55722288 55722989 + 0 NA Intergenic Intergenic -19626 ENSMUSG00000024985.20 ENSMUSG00000024985 ENSMUST00000148666 Tcf7l2 protein_coding Interval_138882 chr6 92889833 92890102 + 0 NA exon (ENSMUSG00000030022.14, exon 14 of 40) protein_coding-exon (ENSMUSG00000030022.14, exon 14 of 40) 20610 ENSMUSG00000079462.1 ENSMUSG00000079462 ENSMUST00000113434 Gm15737 protein_coding Interval_152240 chr7 130865590 130866616 + 0 NA intron (ENSMUSG00000040268.17, intron 1 of 4) protein_coding-intron (ENSMUSG00000040268.17, intron 1 of 9) 227 ENSMUSG00000086108.2 ENSMUSG00000086108 ENSMUST00000146366 Gm5602 antisense Interval_664 chr1 9702033 9702259 + 0 NA Intergenic Intergenic -2492 ENSMUSG00000025912.16 ENSMUSG00000025912 ENSMUST00000188212 Mybl1 protein_coding Interval_147992 chr7 76615616 76617050 + 0 NA intron (ENSMUSG00000025754.11, intron 18 of 22) protein_coding-intron (ENSMUSG00000025754.11, intron 12 of 12) 5268 ENSMUSG00000108514.1 ENSMUSG00000108514 ENSMUST00000206600 2310001K20Rik TEC Interval_77 GL456216.1 30757 32131 + 0 NA NA NA NA NA Interval_49848 chr13 117124982 117125218 + 0 NA Intergenic Intergenic -4927 ENSMUSG00000114792.1 ENSMUSG00000114792 ENSMUST00000224375 Gm6416 lincRNA Interval_30462 chr11 94520973 94522164 + 0 NA promoter-TSS (ENSMUSG00000039110.15) protein_coding-promoter-TSS (ENSMUSG00000039110.15) -12 ENSMUSG00000039110.15 ENSMUSG00000039110 ENSMUST00000151993 Mycbpap protein_coding Interval_140227 chr6 115683911 115685926 + 0 NA Intergenic Intergenic 8950 ENSMUSG00000107994.1 ENSMUSG00000107994 ENSMUST00000203121 D830050J10Rik bidirectional_promoter_lncRNA Interval_99100 chr2 157190448 157190691 + 0 NA intron (ENSMUSG00000027641.13, intron 9 of 15) protein_coding-intron (ENSMUSG00000027641.13, intron 9 of 21) 13965 ENSMUSG00000027641.13 ENSMUSG00000027641 ENSMUST00000141296 Rbl1 protein_coding Interval_75628 chr17 69486168 69486569 + 0 NA intron (ENSMUSG00000091636.2, intron 1 of 1) protein_coding-intron (ENSMUSG00000091636.2, intron 1 of 1) -10493 ENSMUSG00000117053.1 ENSMUSG00000117053 ENSMUST00000232967 A730049N16Rik antisense Interval_38619 chr12 80598249 80599056 + 0 NA TTS (ENSMUSG00000021130.8) protein_coding-TTS (ENSMUSG00000021130.8) -1512 ENSMUSG00000112421.1 ENSMUSG00000112421 ENSMUST00000220065 4933406B15Rik antisense Interval_52046 chr14 34829376 34829644 + 0 NA intron (ENSMUSG00000041078.7, intron 2 of 15) protein_coding-intron (ENSMUSG00000041078.7, intron 2 of 15) -59455 ENSMUSG00000115109.1 ENSMUSG00000115109 ENSMUST00000228194 Gm49032 lincRNA Interval_21288 chr10 127683088 127683311 + 0 NA intron (ENSMUSG00000040195.11, intron 3 of 10) protein_coding-intron (ENSMUSG00000040195.11, intron 1 of 8) -6475 ENSMUSG00000087163.1 ENSMUSG00000087163 ENSMUST00000155550 Gm16230 antisense Interval_44517 chr13 45583025 45583519 + 0 NA intron (ENSMUSG00000046876.16, intron 5 of 6) protein_coding-intron (ENSMUSG00000046876.16, intron 6 of 7) 37119 ENSMUSG00000000253.13 ENSMUSG00000000253 ENSMUST00000222227 Gmpr protein_coding Interval_81474 chr18 60984083 60985208 + 0 NA intron (ENSMUSG00000024617.16, intron 6 of 6) protein_coding-intron (ENSMUSG00000024617.16, intron 18 of 18) 26572 ENSMUSG00000098475.1 ENSMUSG00000098475 ENSMUST00000184354 Mir6982 miRNA Interval_93806 chr2 77058862 77060167 + 0 NA intron (ENSMUSG00000044033.16, intron 9 of 23) protein_coding-intron (ENSMUSG00000044033.16, intron 8 of 11) 14838 ENSMUSG00000105724.1 ENSMUSG00000105724 ENSMUST00000200081 Gm44360 miRNA Interval_29980 chr11 88518765 88519583 + 0 NA intron (ENSMUSG00000069769.13, intron 1 of 5) protein_coding-intron (ENSMUSG00000069769.13, intron 6 of 13) 70973 ENSMUSG00000069769.13 ENSMUSG00000069769 ENSMUST00000126293 Msi2 protein_coding Interval_131612 chr5 138790094 138791653 + 0 NA intron (ENSMUSG00000025854.15, intron 1 of 4) protein_coding-intron (ENSMUSG00000025854.15, intron 3 of 9) -29207 ENSMUSG00000094504.3 ENSMUSG00000094504 ENSMUST00000179205 Gm5294 protein_coding Interval_56433 chr14 118709578 118710200 + 0 NA Intergenic Intergenic -10397 ENSMUSG00000032849.14 ENSMUSG00000032849 ENSMUST00000227480 Abcc4 protein_coding Interval_135565 chr6 40471057 40472188 + 0 NA promoter-TSS (ENSMUSG00000029911.14) protein_coding-promoter-TSS (ENSMUSG00000029911.14) 169 ENSMUSG00000029911.14 ENSMUSG00000029911 ENSMUST00000141801 Ssbp1 protein_coding Interval_118055 chr4 128657665 128658073 + 0 NA intron (ENSMUSG00000028796.17, intron 1 of 6) protein_coding-intron (ENSMUSG00000028796.17, intron 1 of 14) 20398 ENSMUSG00000084891.1 ENSMUSG00000084891 ENSMUST00000141242 Gm12958 lincRNA Interval_39200 chr12 85784638 85786252 + 0 NA intron (ENSMUSG00000034258.4, intron 2 of 6) protein_coding-intron (ENSMUSG00000034258.4, intron 2 of 9) 10615 ENSMUSG00000034258.4 ENSMUSG00000034258 ENSMUST00000221585 Flvcr2 protein_coding Interval_20930 chr10 122184744 122185538 + 0 NA Intergenic Intergenic -14009 ENSMUSG00000112305.1 ENSMUSG00000112305 ENSMUST00000220445 Gm48875 processed_pseudogene Interval_78663 chr18 16613507 16613975 + 0 NA intron (ENSMUSG00000024304.14, intron 13 of 14) protein_coding-intron (ENSMUSG00000024304.14, intron 14 of 15) -114992 ENSMUSG00000085575.1 ENSMUSG00000085575 ENSMUST00000149095 Gm15485 antisense Interval_52444 chr14 46436525 46437134 + 0 NA promoter-TSS (ENSMUSG00000086168.1) lincRNA-promoter-TSS (ENSMUSG00000086168.1) -26 ENSMUSG00000086168.1 ENSMUSG00000086168 ENSMUST00000144439 Gm15221 lincRNA Interval_116596 chr4 115959420 115959853 + 0 NA Intergenic Intergenic -19710 ENSMUSG00000028707.15 ENSMUSG00000028707 ENSMUST00000084338 Dmbx1 protein_coding Interval_91024 chr2 34486169 34486603 + 0 NA intron (ENSMUSG00000038696.14, intron 3 of 5) protein_coding-intron (ENSMUSG00000038696.14, intron 3 of 10) -49804 ENSMUSG00000083233.1 ENSMUSG00000083233 ENSMUST00000121991 Gm13406 processed_pseudogene Interval_154834 chr8 24110316 24110787 + 0 NA intron (ENSMUSG00000037492.16, intron 6 of 7) protein_coding-intron (ENSMUSG00000037492.16, intron 6 of 7) -63353 ENSMUSG00000053979.4 ENSMUSG00000053979 ENSMUST00000066740 A730045E13Rik lincRNA Interval_96251 chr2 120976496 120978019 + 0 NA promoter-TSS (ENSMUSG00000054484.14) protein_coding-promoter-TSS (ENSMUSG00000054484.14) 470 ENSMUSG00000105465.1 ENSMUSG00000105465 ENSMUST00000196757 Gm44325 miRNA Interval_128601 chr5 114245874 114246834 + 0 NA intron (ENSMUSG00000042010.16, intron 36 of 40) protein_coding-intron (ENSMUSG00000042010.16, intron 47 of 51) -8429 ENSMUSG00000084243.1 ENSMUSG00000084243 ENSMUST00000119639 Gm13784 processed_pseudogene Interval_57477 chr15 11617365 11617563 + 0 NA Intergenic Intergenic -13265 ENSMUSG00000115804.1 ENSMUSG00000115804 ENSMUST00000228129 Gm49107 lincRNA Interval_78891 chr18 21198487 21199140 + 0 NA intron (ENSMUSG00000042680.8, intron 2 of 4) protein_coding-intron (ENSMUSG00000042680.8, intron 2 of 5) 101310 ENSMUSG00000042680.8 ENSMUSG00000042680 ENSMUST00000234115 Garem1 protein_coding Interval_133285 chr5 151154605 151155387 + 0 NA intron (ENSMUSG00000107011.1, intron 2 of 5) protein_coding-intron (ENSMUSG00000016128.14, intron 1 of 13) -46261 ENSMUSG00000016128.14 ENSMUSG00000016128 ENSMUST00000202866 Stard13 protein_coding Interval_66780 chr16 37564402 37565268 + 0 NA TTS (ENSMUSG00000022827.14) protein_coding-TTS (ENSMUSG00000022827.14) 1101 ENSMUSG00000022827.14 ENSMUSG00000022827 ENSMUST00000140799 Rabl3 protein_coding Interval_101053 chr2 174665331 174665870 + 0 NA intron (ENSMUSG00000050600.5, intron 3 of 4) protein_coding-intron (ENSMUSG00000050600.5, intron 3 of 4) 22066 ENSMUSG00000050600.5 ENSMUSG00000050600 ENSMUST00000059452 Zfp831 protein_coding Interval_158215 chr8 79886451 79886731 + 0 NA Intergenic Intergenic -22512 ENSMUSG00000110188.1 ENSMUSG00000110188 ENSMUST00000210391 Gm45432 processed_pseudogene Interval_106056 chr3 92033210 92034975 + 0 NA Intergenic Intergenic 9525 ENSMUSG00000082826.1 ENSMUSG00000082826 ENSMUST00000118636 Mif-ps3 processed_pseudogene Interval_83702 chr19 3851073 3852942 + 0 NA promoter-TSS (ENSMUSG00000024843.15) protein_coding-promoter-TSS (ENSMUSG00000024843.15) 175 ENSMUSG00000024843.15 ENSMUSG00000024843 ENSMUST00000125013 Chka protein_coding Interval_40125 chr12 101796406 101797049 + 0 NA intron (ENSMUSG00000021186.9, intron 4 of 10) protein_coding-intron (ENSMUSG00000021186.9, intron 4 of 10) 21741 ENSMUSG00000021186.9 ENSMUSG00000021186 ENSMUST00000221373 Fbln5 protein_coding Interval_60195 chr15 67292988 67293387 + 0 NA intron (ENSMUSG00000102069.1, intron 5 of 8) lincRNA-intron (ENSMUSG00000102069.1, intron 5 of 8) 66418 ENSMUSG00000102069.1 ENSMUSG00000102069 ENSMUST00000187233 1700012I11Rik lincRNA Interval_25872 chr11 52274333 52275683 + 0 NA promoter-TSS (ENSMUSG00000000782.16) protein_coding-promoter-TSS (ENSMUSG00000000782.16) -131 ENSMUSG00000000782.16 ENSMUSG00000000782 ENSMUST00000238914 Tcf7 protein_coding Interval_64813 chr16 16099693 16099996 + 0 NA exon (ENSMUSG00000116385.1, exon 1 of 1) processed_pseudogene-exon (ENSMUSG00000116385.1, exon 1 of 1) 246 ENSMUSG00000116385.1 ENSMUSG00000116385 ENSMUST00000230117 Gm18334 processed_pseudogene Interval_136876 chr6 62277347 62277542 + 0 NA intron (ENSMUSG00000039578.17, intron 2 of 2) protein_coding-intron (ENSMUSG00000039578.17, intron 9 of 9) 16566 ENSMUSG00000107590.1 ENSMUSG00000107590 ENSMUST00000204019 Gm43897 processed_pseudogene Interval_159564 chr8 95478553 95478766 + 0 NA intron (ENSMUSG00000046707.9, intron 1 of 8) protein_coding-intron (ENSMUSG00000046707.9, intron 2 of 11) 4964 ENSMUSG00000110635.1 ENSMUSG00000110635 ENSMUST00000212310 Gm45853 TEC Interval_72334 chr17 29263732 29264611 + 0 NA promoter-TSS (ENSMUSG00000024007.15) protein_coding-promoter-TSS (ENSMUSG00000024007.15) 172 ENSMUSG00000117614.1 ENSMUSG00000117614 ENSMUST00000234345 Gm50068 antisense Interval_115133 chr4 91321525 91321989 + 0 NA intron (ENSMUSG00000008489.18, intron 1 of 7) protein_coding-intron (ENSMUSG00000008489.18, intron 1 of 6) 34925 ENSMUSG00000008489.18 ENSMUSG00000008489 ENSMUST00000176151 Elavl2 protein_coding Interval_89004 chr2 14277813 14277980 + 0 NA intron (ENSMUSG00000026712.3, intron 10 of 29) protein_coding-intron (ENSMUSG00000026712.3, intron 10 of 29) 16893 ENSMUSG00000077897.1 ENSMUSG00000077897 ENSMUST00000104704 Mir511 miRNA Interval_2131 chr1 36625934 36627190 + 0 NA intron (ENSMUSG00000046337.17, intron 6 of 14) protein_coding-intron (ENSMUSG00000046337.17, intron 6 of 9) 24760 ENSMUSG00000089906.1 ENSMUSG00000089906 ENSMUST00000161062 Gm6428 processed_pseudogene Interval_143363 chr7 6141388 6142343 + 0 NA TTS (ENSMUSG00000046792.8) protein_coding-TTS (ENSMUSG00000046792.8) 980 ENSMUSG00000046792.8 ENSMUSG00000046792 ENSMUST00000208746 Zfp787 protein_coding Interval_42355 chr13 12307305 12308685 + 0 NA TTS (ENSMUSG00000052374.16) protein_coding-TTS (ENSMUSG00000052374.16) -33899 ENSMUSG00000052374.16 ENSMUSG00000052374 ENSMUST00000110616 Actn2 protein_coding Interval_135922 chr6 48725398 48725838 + 0 NA TTS (ENSMUSG00000043931.10) protein_coding-TTS (ENSMUSG00000043931.10) 6961 ENSMUSG00000043931.10 ENSMUSG00000043931 ENSMUST00000204266 Gimap7 protein_coding Interval_23788 chr11 26265694 26266008 + 0 NA Intergenic Intergenic 63611 ENSMUSG00000099015.1 ENSMUSG00000099015 ENSMUST00000185114 Mir6372 miRNA Interval_166046 chr9 56041524 56042557 + 0 NA exon (ENSMUSG00000032320.7, exon 1 of 7) protein_coding-exon (ENSMUSG00000032320.7, exon 1 of 7) 170 ENSMUSG00000032320.7 ENSMUSG00000032320 ENSMUST00000144869 Rcn2 protein_coding Interval_29709 chr11 86285359 86285939 + 0 NA intron (ENSMUSG00000034297.14, intron 20 of 29) protein_coding-intron (ENSMUSG00000034297.14, intron 20 of 29) 46534 ENSMUSG00000034297.14 ENSMUSG00000034297 ENSMUST00000144983 Med13 protein_coding Interval_16091 chr10 60685936 60687914 + 0 NA exon (ENSMUSG00000012819.15, exon 2 of 71) protein_coding-exon (ENSMUSG00000012819.15, exon 2 of 71) 65858 ENSMUSG00000020100.15 ENSMUSG00000020100 ENSMUST00000144989 Slc29a3 protein_coding Interval_24802 chr11 38653541 38653757 + 0 NA Intergenic Intergenic -133636 ENSMUSG00000087296.1 ENSMUSG00000087296 ENSMUST00000133599 Gm12130 lincRNA Interval_82200 chr18 68928170 68928786 + 0 NA intron (ENSMUSG00000024546.6, intron 3 of 6) lincRNA-intron (ENSMUSG00000024546.6, intron 3 of 6) 23050 ENSMUSG00000024546.6 ENSMUSG00000024546 ENSMUST00000025428 4930546C10Rik lincRNA Interval_32865 chr11 112553413 112553756 + 0 NA Intergenic Intergenic 157756 ENSMUSG00000041674.16 ENSMUSG00000041674 ENSMUST00000148724 BC006965 processed_transcript Interval_112437 chr4 41265342 41266041 + 0 NA intron (ENSMUSG00000028433.14, intron 1 of 28) protein_coding-intron (ENSMUSG00000028433.14, intron 1 of 28) 13074 ENSMUSG00000081866.1 ENSMUSG00000081866 ENSMUST00000118435 Gm12401 processed_pseudogene Interval_10456 chr1 170998339 170998929 + 0 NA Intergenic Intergenic 16690 ENSMUSG00000104340.1 ENSMUSG00000104340 ENSMUST00000194503 Gm10522 lincRNA Interval_96809 chr2 128456791 128456981 + 0 NA intron (ENSMUSG00000114963.1, intron 5 of 7) lincRNA-intron (ENSMUSG00000074813.14, intron 2 of 2) 23163 ENSMUSG00000114963.1 ENSMUSG00000114963 ENSMUST00000224297 Gm29010 lincRNA Interval_6592 chr1 117870659 117871310 + 0 NA intron (ENSMUSG00000100886.1, intron 2 of 2) unprocessed_pseudogene-intron (ENSMUSG00000100886.1, intron 2 of 2) 2462 ENSMUSG00000100886.1 ENSMUSG00000100886 ENSMUST00000190869 Gm7195 unprocessed_pseudogene Interval_167915 chr9 74226158 74226599 + 0 NA intron (ENSMUSG00000044976.17, intron 18 of 19) protein_coding-intron (ENSMUSG00000044976.17, intron 18 of 19) 116022 ENSMUSG00000044976.17 ENSMUSG00000044976 ENSMUST00000149439 Wdr72 protein_coding Interval_172880 chrX 52752679 52754174 + 0 NA Intergenic Intergenic -8466 ENSMUSG00000086173.7 ENSMUSG00000086173 ENSMUST00000154488 Kis2 processed_transcript Interval_142190 chr6 138037101 138037974 + 0 NA promoter-TSS (ENSMUSG00000044378.12) protein_coding-promoter-TSS (ENSMUSG00000044378.12) 42379 ENSMUSG00000044378.12 ENSMUSG00000044378 ENSMUST00000154461 Slc15a5 protein_coding Interval_107934 chr3 116971695 116972026 + 0 NA intron (ENSMUSG00000080907.1, intron 2 of 2) protein_coding-intron (ENSMUSG00000080907.1, intron 2 of 2) -3117 ENSMUSG00000033377.14 ENSMUSG00000033377 ENSMUST00000197659 Palmd protein_coding Interval_42663 chr13 17784159 17785337 + 0 NA intron (ENSMUSG00000041297.8, intron 1 of 13) protein_coding-intron (ENSMUSG00000041297.8, intron 1 of 13) 20349 ENSMUSG00000041297.8 ENSMUSG00000041297 ENSMUST00000221775 Cdk13 protein_coding Interval_82856 chr18 77511791 77512127 + 0 NA intron (ENSMUSG00000025427.15, intron 1 of 4) protein_coding-intron (ENSMUSG00000025427.15, intron 1 of 7) -1481 ENSMUSG00000117855.1 ENSMUSG00000117855 ENSMUST00000236419 Gm50197 processed_pseudogene Interval_95165 chr2 104479192 104479804 + 0 NA intron (ENSMUSG00000027177.14, intron 1 of 16) protein_coding-intron (ENSMUSG00000027177.14, intron 1 of 15) -40246 ENSMUSG00000027177.14 ENSMUSG00000027177 ENSMUST00000132622 Hipk3 protein_coding Interval_104615 chr3 68837337 68837748 + 0 NA Intergenic Intergenic -8537 ENSMUSG00000102853.1 ENSMUSG00000102853 ENSMUST00000195818 Gm7270 processed_pseudogene Interval_62162 chr15 88399110 88401390 + 0 NA Intergenic Intergenic -84618 ENSMUSG00000115880.1 ENSMUSG00000115880 ENSMUST00000230151 4930445N06Rik lincRNA Interval_92684 chr2 62614614 62614810 + 0 NA intron (ENSMUSG00000026896.14, intron 5 of 7) protein_coding-intron (ENSMUSG00000026896.14, intron 5 of 15) 31543 ENSMUSG00000026896.14 ENSMUSG00000026896 ENSMUST00000175964 Ifih1 protein_coding Interval_114428 chr4 76117833 76118568 + 0 NA intron (ENSMUSG00000028399.18, intron 10 of 30) protein_coding-intron (ENSMUSG00000028399.18, intron 9 of 29) -33743 ENSMUSG00000028399.18 ENSMUSG00000028399 ENSMUST00000134604 Ptprd protein_coding Interval_28118 chr11 72976801 72977594 + 0 NA exon (ENSMUSG00000020788.15, exon 9 of 22) protein_coding-exon (ENSMUSG00000020788.15, exon 9 of 22) 16028 ENSMUSG00000020788.15 ENSMUSG00000020788 ENSMUST00000135234 Atp2a3 protein_coding Interval_63578 chr15 102156420 102157313 + 0 NA exon (ENSMUSG00000023045.13, exon 6 of 15) protein_coding-exon (ENSMUSG00000023045.13, exon 6 of 15) 5750 ENSMUSG00000023045.13 ENSMUSG00000023045 ENSMUST00000160465 Soat2 protein_coding Interval_38458 chr12 79171814 79173020 + 0 NA promoter-TSS (ENSMUSG00000021124.13) protein_coding-promoter-TSS (ENSMUSG00000021124.13) 3931 ENSMUSG00000091507.1 ENSMUSG00000091507 ENSMUST00000164610 Gm17194 processed_pseudogene Interval_125140 chr5 64821077 64822174 + 0 NA promoter-TSS (ENSMUSG00000029178.14) protein_coding-promoter-TSS (ENSMUSG00000029178.14) 17611 ENSMUSG00000106205.1 ENSMUSG00000106205 ENSMUST00000198074 C230096K16Rik TEC Interval_127226 chr5 101663194 101665791 + 0 NA exon (ENSMUSG00000035187.10, exon 1 of 3) protein_coding-exon (ENSMUSG00000035187.10, exon 1 of 3) 504 ENSMUSG00000035187.10 ENSMUSG00000035187 ENSMUST00000044125 Nkx6-1 protein_coding Interval_105998 chr3 90525486 90526730 + 0 NA promoter-TSS (ENSMUSG00000042306.11) protein_coding-promoter-TSS (ENSMUSG00000042306.11) -764 ENSMUSG00000042306.11 ENSMUSG00000042306 ENSMUST00000200565 S100a14 protein_coding Interval_14632 chr10 37242860 37243705 + 0 NA Intergenic Intergenic 20466 ENSMUSG00000110799.1 ENSMUSG00000110799 ENSMUST00000217044 4930543K20Rik lincRNA Interval_33618 chr11 117544202 117545409 + 0 NA Intergenic Intergenic 21202 ENSMUSG00000085419.1 ENSMUSG00000085419 ENSMUST00000132261 Gm11734 lincRNA Interval_143304 chr7 5047075 5047787 + 0 NA exon (ENSMUSG00000086604.2, exon 4 of 4) antisense-exon (ENSMUSG00000086604.2, exon 4 of 4) -4558 ENSMUSG00000055633.6 ENSMUSG00000055633 ENSMUST00000208570 Zfp580 protein_coding Interval_139083 chr6 94897673 94897869 + 0 NA Intergenic Intergenic -46063 ENSMUSG00000108187.1 ENSMUSG00000108187 ENSMUST00000203778 4930511E03Rik lincRNA Interval_27382 chr11 67110003 67110446 + 0 NA Intergenic Intergenic 6617 ENSMUSG00000087410.7 ENSMUSG00000087410 ENSMUST00000153497 2310065F04Rik lincRNA Interval_61709 chr15 83510349 83511263 + 0 NA promoter-TSS (ENSMUSG00000022442.16) protein_coding-promoter-TSS (ENSMUSG00000022442.16) -13 ENSMUSG00000022442.16 ENSMUSG00000022442 ENSMUST00000154401 Ttll1 protein_coding Interval_154382 chr8 15143302 15143686 + 0 NA intron (ENSMUSG00000110286.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000110286.1, intron 1 of 1) 2450 ENSMUSG00000110286.1 ENSMUSG00000110286 ENSMUST00000209946 Gm7706 lincRNA Interval_149043 chr7 92640268 92640966 + 0 NA exon (ENSMUSG00000102555.1, exon 1 of 1) TEC-exon (ENSMUSG00000102555.1, exon 1 of 1) 668 ENSMUSG00000102555.1 ENSMUSG00000102555 ENSMUST00000192772 6430511E19Rik TEC Interval_69445 chr16 93489517 93490096 + 0 NA Intergenic Intergenic -2732 ENSMUSG00000116595.1 ENSMUSG00000116595 ENSMUST00000231757 Gm30695 lincRNA Interval_87449 chr19 51419446 51420338 + 0 NA Intergenic Intergenic -180096 ENSMUSG00000065143.1 ENSMUSG00000065143 ENSMUST00000083209 Gm25644 snRNA Interval_46782 chr13 70349549 70350275 + 0 NA Intergenic Intergenic 72869 ENSMUSG00000114054.1 ENSMUSG00000114054 ENSMUST00000220989 Gm47706 processed_pseudogene Interval_141186 chr6 125473343 125473639 + 0 NA intron (ENSMUSG00000030342.8, intron 1 of 7) protein_coding-intron (ENSMUSG00000030342.8, intron 1 of 7) -8453 ENSMUSG00000101191.6 ENSMUSG00000101191 ENSMUST00000187724 Gm28809 antisense Interval_120836 chr4 150925722 150926662 + 0 NA intron (ENSMUSG00000028965.13, intron 1 of 7) protein_coding-intron (ENSMUSG00000028965.13, intron 1 of 7) -1807 ENSMUSG00000028965.13 ENSMUSG00000028965 ENSMUST00000126707 Tnfrsf9 protein_coding Interval_120492 chr4 148945312 148946747 + 0 NA promoter-TSS (ENSMUSG00000028977.17) protein_coding-promoter-TSS (ENSMUSG00000028977.17) -973 ENSMUSG00000028977.17 ENSMUSG00000028977 ENSMUST00000239035 Casz1 protein_coding Interval_112056 chr4 33706804 33707232 + 0 NA Intergenic Intergenic -25527 ENSMUSG00000077397.1 ENSMUSG00000077397 ENSMUST00000104209 Gm24341 snoRNA Interval_46910 chr13 73338112 73338774 + 0 NA Intergenic Intergenic 7417 ENSMUSG00000021607.9 ENSMUSG00000021607 ENSMUST00000222030 Mrpl36 protein_coding Interval_16812 chr10 68293239 68293726 + 0 NA Intergenic Intergenic -14742 ENSMUSG00000019947.10 ENSMUSG00000019947 ENSMUST00000218425 Arid5b protein_coding Interval_23005 chr11 18870090 18870315 + 0 NA intron (ENSMUSG00000085743.1, intron 1 of 2) processed_transcript-intron (ENSMUSG00000085743.1, intron 1 of 2) -10087 ENSMUSG00000085743.1 ENSMUSG00000085743 ENSMUST00000133948 8430419K02Rik processed_transcript Interval_9490 chr1 157723647 157724762 + 0 NA Intergenic Intergenic -102068 ENSMUSG00000103962.1 ENSMUSG00000103962 ENSMUST00000193203 Gm38213 processed_pseudogene Interval_36338 chr12 41565639 41566741 + 0 NA intron (ENSMUSG00000056899.10, intron 3 of 5) protein_coding-intron (ENSMUSG00000056899.10, intron 4 of 6) 20799 ENSMUSG00000113766.1 ENSMUSG00000113766 ENSMUST00000222596 Gm47374 TEC Interval_114761 chr4 84836786 84837227 + 0 NA Intergenic Intergenic -47459 ENSMUSG00000038070.15 ENSMUSG00000038070 ENSMUST00000107190 Cntln protein_coding Interval_35102 chr12 17335811 17336065 + 0 NA Intergenic Intergenic -11225 ENSMUSG00000020566.19 ENSMUSG00000020566 ENSMUST00000143131 Atp6v1c2 protein_coding Interval_30715 chr11 96093946 96095572 + 0 NA Intergenic Intergenic -10903 ENSMUSG00000064795.1 ENSMUSG00000064795 ENSMUST00000082861 Gm22423 snRNA Interval_144082 chr7 19353634 19354513 + 0 NA promoter-TSS (ENSMUSG00000003549.9) protein_coding-promoter-TSS (ENSMUSG00000003549.9) 1440 ENSMUSG00000003549.9 ENSMUSG00000003549 ENSMUST00000176723 Ercc1 protein_coding Interval_155490 chr8 33885432 33886112 + 0 NA promoter-TSS (ENSMUSG00000098166.1) sense_intronic-promoter-TSS (ENSMUSG00000098166.1) -25 ENSMUSG00000098166.1 ENSMUSG00000098166 ENSMUST00000182843 Gm26978 sense_intronic Interval_43624 chr13 34187192 34187927 + 0 NA intron (ENSMUSG00000038267.15, intron 9 of 9) protein_coding-intron (ENSMUSG00000038267.15, intron 10 of 10) 24595 ENSMUSG00000071451.10 ENSMUSG00000071451 ENSMUST00000147632 Psmg4 protein_coding Interval_164580 chr9 39359646 39359925 + 0 NA Intergenic Intergenic -4776 ENSMUSG00000110780.1 ENSMUSG00000110780 ENSMUST00000215546 Olfr949-ps1 polymorphic_pseudogene Interval_140826 chr6 121879210 121879414 + 0 NA exon (ENSMUSG00000059908.9, exon 25 of 36) protein_coding-exon (ENSMUSG00000059908.9, exon 25 of 36) 35788 ENSMUSG00000107735.1 ENSMUSG00000107735 ENSMUST00000204316 Gm44173 processed_pseudogene Interval_45339 chr13 54558490 54559653 + 0 NA intron (ENSMUSG00000025871.18, intron 1 of 4) protein_coding-intron (ENSMUSG00000025871.18, intron 5 of 8) 6262 ENSMUSG00000025871.18 ENSMUSG00000025871 ENSMUST00000126295 4833439L19Rik protein_coding Interval_159442 chr8 94734946 94735388 + 0 NA Intergenic Intergenic -10513 ENSMUSG00000031779.3 ENSMUSG00000031779 ENSMUST00000156137 Ccl22 protein_coding Interval_103726 chr3 52069251 52070361 + 0 NA intron (ENSMUSG00000061143.15, intron 1 of 4) protein_coding-intron (ENSMUSG00000061143.15, intron 1 of 4) 3581 ENSMUSG00000102808.1 ENSMUSG00000102808 ENSMUST00000194956 5430420F09Rik TEC Interval_157680 chr8 72265450 72265997 + 0 NA Intergenic Intergenic 18431 ENSMUSG00000110443.1 ENSMUSG00000110443 ENSMUST00000212069 Gm39197 processed_pseudogene Interval_84124 chr19 7352816 7354272 + 0 NA TTS (ENSMUSG00000024970.5) protein_coding-TTS (ENSMUSG00000024970.5) -10971 ENSMUSG00000117743.1 ENSMUSG00000117743 ENSMUST00000235544 Gm50232 antisense Interval_114402 chr4 75240460 75240738 + 0 NA Intergenic Intergenic 37706 ENSMUSG00000028398.8 ENSMUSG00000028398 ENSMUST00000030103 Dmac1 protein_coding Interval_34422 chr12 4038030 4039423 + 0 NA promoter-TSS (ENSMUSG00000020658.10) protein_coding-promoter-TSS (ENSMUSG00000020658.10) 38898 ENSMUSG00000112817.1 ENSMUSG00000112817 ENSMUST00000219162 Gm48122 processed_pseudogene Interval_46447 chr13 65343419 65343592 + 0 NA intron (ENSMUSG00000113406.1, intron 1 of 3) lincRNA-intron (ENSMUSG00000113406.1, intron 1 of 3) -1622 ENSMUSG00000114142.1 ENSMUSG00000114142 ENSMUST00000222824 Gm47264 processed_pseudogene Interval_63548 chr15 101975799 101976237 + 0 NA Intergenic Intergenic -21731 ENSMUSG00000050463.9 ENSMUSG00000050463 ENSMUST00000164932 Krt78 protein_coding Interval_88349 chr2 4253609 4253828 + 0 NA intron (ENSMUSG00000026657.17, intron 1 of 22) protein_coding-intron (ENSMUSG00000026657.17, intron 1 of 22) -31842 ENSMUSG00000026657.17 ENSMUSG00000026657 ENSMUST00000176864 Frmd4a protein_coding Interval_146344 chr7 45434153 45435243 + 0 NA promoter-TSS (ENSMUSG00000003865.16) protein_coding-promoter-TSS (ENSMUSG00000003865.16) 11 ENSMUSG00000003868.14 ENSMUSG00000003868 ENSMUST00000211666 Ruvbl2 protein_coding Interval_78320 chr18 11951120 11951809 + 0 NA Intergenic Intergenic 38333 ENSMUSG00000117430.1 ENSMUSG00000117430 ENSMUST00000234828 Gm49968 TEC Interval_13960 chr10 25061425 25062178 + 0 NA Intergenic Intergenic 7661 ENSMUSG00000093282.1 ENSMUSG00000093282 ENSMUST00000175541 Gm22566 miRNA Interval_22226 chr11 7284642 7285411 + 0 NA intron (ENSMUSG00000087637.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000087637.1, intron 1 of 1) 5348 ENSMUSG00000087637.1 ENSMUSG00000087637 ENSMUST00000149481 Gm11986 lincRNA Interval_85544 chr19 28365824 28366620 + 0 NA intron (ENSMUSG00000052942.13, intron 4 of 10) protein_coding-intron (ENSMUSG00000052942.13, intron 3 of 9) -65797 ENSMUSG00000052942.13 ENSMUSG00000052942 ENSMUST00000161328 Glis3 protein_coding Interval_172744 chrX 48207967 48209045 + 0 NA promoter-TSS (ENSMUSG00000036985.12) protein_coding-promoter-TSS (ENSMUSG00000036985.12) 152 ENSMUSG00000036985.12 ENSMUSG00000036985 ENSMUST00000149416 Zdhhc9 protein_coding Interval_89904 chr2 26362940 26363457 + 0 NA intron (ENSMUSG00000036281.13, intron 23 of 23) protein_coding-intron (ENSMUSG00000036281.13, intron 22 of 22) -2299 ENSMUSG00000086779.1 ENSMUSG00000086779 ENSMUST00000137869 Gm13562 processed_transcript Interval_123115 chr5 29783362 29783881 + 0 NA intron (ENSMUSG00000029131.14, intron 9 of 9) protein_coding-intron (ENSMUSG00000029131.14, intron 9 of 9) 11416 ENSMUSG00000106558.1 ENSMUSG00000106558 ENSMUST00000197149 Gm5552 processed_pseudogene Interval_67642 chr16 55120612 55121213 + 0 NA Intergenic Intergenic 148481 ENSMUSG00000064549.1 ENSMUSG00000064549 ENSMUST00000082615 Gm22977 snRNA Interval_49091 chr13 107904765 107905123 + 0 NA Intergenic Intergenic -14880 ENSMUSG00000032846.10 ENSMUSG00000032846 ENSMUST00000224719 Zswim6 protein_coding Interval_83619 chr19 3159574 3160621 + 0 NA promoter-TSS (ENSMUSG00000100969.7) lincRNA-promoter-TSS (ENSMUSG00000100969.7) 3474 ENSMUSG00000117928.1 ENSMUSG00000117928 ENSMUST00000237449 Gm42068 processed_pseudogene Interval_32077 chr11 105140511 105141334 + 0 NA promoter-TSS (ENSMUSG00000088259.1) misc_RNA-promoter-TSS (ENSMUSG00000088259.1) -292 ENSMUSG00000088259.1 ENSMUSG00000088259 ENSMUST00000157634 Gm24290 misc_RNA Interval_83322 chr18 84195643 84196476 + 0 NA intron (ENSMUSG00000048410.17, intron 2 of 2) protein_coding-intron (ENSMUSG00000048410.17, intron 2 of 2) -6865 ENSMUSG00000118385.1 ENSMUSG00000118385 ENSMUST00000238064 Gm50311 antisense Interval_147366 chr7 66182277 66182653 + 0 NA Intergenic Intergenic -8090 ENSMUSG00000108686.1 ENSMUSG00000108686 ENSMUST00000206648 Gm45080 processed_pseudogene Interval_13063 chr10 10975174 10975595 + 0 NA intron (ENSMUSG00000019828.13, intron 2 of 9) protein_coding-intron (ENSMUSG00000019828.13, intron 2 of 8) -60532 ENSMUSG00000111921.1 ENSMUSG00000111921 ENSMUST00000218933 Gm48406 processed_pseudogene Interval_26479 chr11 58083097 58083300 + 0 NA intron (ENSMUSG00000086962.4, intron 1 of 8) protein_coding-intron (ENSMUSG00000086962.4, intron 1 of 8) 9936 ENSMUSG00000086962.4 ENSMUSG00000086962 ENSMUST00000137124 Gm12248 protein_coding Interval_152612 chr7 135187730 135187999 + 0 NA Intergenic Intergenic 8138 ENSMUSG00000100717.6 ENSMUSG00000100717 ENSMUST00000187267 1700120G07Rik lincRNA Interval_77227 chr17 87471131 87472200 + 0 NA intron (ENSMUSG00000117486.1, intron 3 of 3) lincRNA-intron (ENSMUSG00000117486.1, intron 3 of 3) 2077 ENSMUSG00000117486.1 ENSMUSG00000117486 ENSMUST00000234254 Gm30938 lincRNA Interval_23882 chr11 27585415 27585601 + 0 NA Intergenic Intergenic -77408 ENSMUSG00000082243.1 ENSMUSG00000082243 ENSMUST00000122413 Gm3810 processed_pseudogene Interval_67868 chr16 58415266 58415576 + 0 NA intron (ENSMUSG00000035107.13, intron 1 of 15) protein_coding-intron (ENSMUSG00000035107.13, intron 1 of 15) -7145 ENSMUSG00000086827.1 ENSMUSG00000086827 ENSMUST00000133622 4930461C15Rik lincRNA Interval_44445 chr13 44874710 44875121 + 0 NA TTS (ENSMUSG00000038518.15) protein_coding-TTS (ENSMUSG00000038518.15) -36632 ENSMUSG00000088189.1 ENSMUSG00000088189 ENSMUST00000157564 Gm22213 snoRNA Interval_2769 chr1 44563981 44565007 + 0 NA exon (ENSMUSG00000102319.1, exon 1 of 1) TEC-exon (ENSMUSG00000102319.1, exon 1 of 1) 3609 ENSMUSG00000102319.1 ENSMUSG00000102319 ENSMUST00000194332 Gm37626 TEC Interval_155359 chr8 32292729 32294192 + 0 NA promoter-TSS (ENSMUSG00000062991.9) protein_coding-promoter-TSS (ENSMUSG00000062991.9) 107331 ENSMUSG00000089370.1 ENSMUSG00000089370 ENSMUST00000158745 Gm22140 snRNA Interval_84456 chr19 11121028 11122114 + 0 NA promoter-TSS (ENSMUSG00000099998.1) processed_pseudogene-promoter-TSS (ENSMUSG00000099998.1) 61 ENSMUSG00000099998.1 ENSMUSG00000099998 ENSMUST00000187178 Gm6501 processed_pseudogene Interval_62715 chr15 96425787 96426006 + 0 NA intron (ENSMUSG00000033228.8, intron 3 of 7) protein_coding-intron (ENSMUSG00000033228.8, intron 6 of 14) 18159 ENSMUSG00000033228.8 ENSMUSG00000033228 ENSMUST00000227133 Scaf11 protein_coding Interval_69954 chr17 3471243 3472806 + 0 NA intron (ENSMUSG00000023800.15, intron 1 of 3) protein_coding-intron (ENSMUSG00000023800.15, intron 14 of 26) -9692 ENSMUSG00000115039.1 ENSMUSG00000115039 ENSMUST00000228135 Gm7043 processed_pseudogene Interval_139830 chr6 109557141 109557351 + 0 NA Intergenic Intergenic 6875 ENSMUSG00000108272.1 ENSMUSG00000108272 ENSMUST00000203532 Gm44161 processed_pseudogene Interval_137685 chr6 79307101 79307701 + 0 NA Intergenic Intergenic -233807 ENSMUSG00000107618.1 ENSMUSG00000107618 ENSMUST00000204707 Gm6261 processed_pseudogene Interval_17234 chr10 75182152 75183202 + 0 NA exon (ENSMUSG00000009681.10, exon 23 of 23) protein_coding-exon (ENSMUSG00000009681.10, exon 23 of 23) 6301 ENSMUSG00000009681.10 ENSMUSG00000009681 ENSMUST00000219807 Bcr protein_coding Interval_118031 chr4 128494104 128495021 + 0 NA intron (ENSMUSG00000028804.20, intron 42 of 70) protein_coding-intron (ENSMUSG00000028804.20, intron 7 of 9) -58013 ENSMUSG00000028804.20 ENSMUSG00000028804 ENSMUST00000221199 Csmd2 protein_coding Interval_91499 chr2 39468603 39468975 + 0 NA Intergenic Intergenic 56566 ENSMUSG00000081839.1 ENSMUSG00000081839 ENSMUST00000118166 Gm13454 processed_pseudogene Interval_151747 chr7 126391832 126393092 + 0 NA intron (ENSMUSG00000030722.7, intron 2 of 7) protein_coding-intron (ENSMUSG00000030722.7, intron 2 of 7) -1905 ENSMUSG00000030722.7 ENSMUSG00000030722 ENSMUST00000142947 Nfatc2ip protein_coding Interval_93223 chr2 71289792 71290575 + 0 NA intron (ENSMUSG00000027010.16, intron 12 of 16) protein_coding-intron (ENSMUSG00000027010.16, intron 3 of 7) -29600 ENSMUSG00000082190.1 ENSMUSG00000082190 ENSMUST00000117993 Gm13641 processed_pseudogene Interval_173425 chrX 93286178 93286869 + 0 NA promoter-TSS (ENSMUSG00000035277.15) protein_coding-promoter-TSS (ENSMUSG00000035277.15) 78 ENSMUSG00000035277.15 ENSMUSG00000035277 ENSMUST00000113947 Arx protein_coding Interval_119232 chr4 136345327 136346121 + 0 NA exon (ENSMUSG00000066037.14, exon 11 of 11) protein_coding-exon (ENSMUSG00000066037.14, exon 11 of 11) 3717 ENSMUSG00000098155.1 ENSMUSG00000098155 ENSMUST00000183225 Gm27022 lincRNA Interval_173141 chrX 73411098 73411483 + 0 NA promoter-TSS (ENSMUSG00000031374.13) protein_coding-promoter-TSS (ENSMUSG00000031374.13) 146 ENSMUSG00000097110.1 ENSMUSG00000097110 ENSMUST00000181889 Gm26726 antisense Interval_75992 chr17 74220343 74220625 + 0 NA intron (ENSMUSG00000058704.9, intron 6 of 8) protein_coding-intron (ENSMUSG00000058704.9, intron 7 of 8) 8526 ENSMUSG00000117262.1 ENSMUSG00000117262 ENSMUST00000233585 Gm9316 processed_pseudogene Interval_98468 chr2 152626525 152628156 + 0 NA intron (ENSMUSG00000000359.3, intron 1 of 1) protein_coding-intron (ENSMUSG00000000359.3, intron 1 of 4) 387 ENSMUSG00000000359.3 ENSMUSG00000000359 ENSMUST00000139370 Rem1 protein_coding Interval_67399 chr16 48325230 48326212 + 0 NA Intergenic Intergenic 21813 ENSMUSG00000072419.5 ENSMUSG00000072419 ENSMUST00000097175 Dppa2 protein_coding Interval_153096 chr7 141326821 141328682 + 0 NA promoter-TSS (ENSMUSG00000025505.16) protein_coding-promoter-TSS (ENSMUSG00000025505.16) 12 ENSMUSG00000025505.16 ENSMUSG00000025505 ENSMUST00000134221 Tmem80 protein_coding Interval_17747 chr10 79880474 79881347 + 0 NA promoter-TSS (ENSMUSG00000057729.12) protein_coding-promoter-TSS (ENSMUSG00000057729.12) -873 ENSMUSG00000057729.12 ENSMUSG00000057729 ENSMUST00000171489 Prtn3 protein_coding Interval_8347 chr1 137631343 137632001 + 0 NA Intergenic Intergenic -100442 ENSMUSG00000103070.1 ENSMUSG00000103070 ENSMUST00000192122 Gm37903 TEC Interval_11914 chr1 187078889 187079361 + 0 NA intron (ENSMUSG00000026611.17, intron 9 of 10) protein_coding-intron (ENSMUSG00000026611.17, intron 9 of 9) 4759 ENSMUSG00000106839.1 ENSMUSG00000106839 ENSMUST00000201137 Gm43497 TEC Interval_51253 chr14 25560790 25561683 + 0 NA intron (ENSMUSG00000007817.15, intron 3 of 3) protein_coding-intron (ENSMUSG00000007817.15, intron 3 of 23) 26797 ENSMUSG00000093081.1 ENSMUSG00000093081 ENSMUST00000175340 Mir3075 miRNA Interval_52042 chr14 34780148 34780339 + 0 NA Intergenic Intergenic -10188 ENSMUSG00000115109.1 ENSMUSG00000115109 ENSMUST00000228194 Gm49032 lincRNA Interval_116570 chr4 115784276 115785861 + 0 NA promoter-TSS (ENSMUSG00000028710.18) protein_coding-promoter-TSS (ENSMUSG00000028710.18) 84 ENSMUSG00000028710.18 ENSMUSG00000028710 ENSMUST00000137401 Atpaf1 protein_coding Interval_72676 chr17 31495721 31496752 + 0 NA exon (ENSMUSG00000024037.13, exon 6 of 6) protein_coding-exon (ENSMUSG00000024037.13, exon 6 of 6) -8867 ENSMUSG00000118390.1 ENSMUSG00000118390 ENSMUST00000237599 Gm50102 TEC Interval_165160 chr9 44909537 44910520 + 0 NA Intergenic Intergenic 8838 ENSMUSG00000038717.8 ENSMUSG00000038717 ENSMUST00000213999 Atp5l protein_coding Interval_98909 chr2 155951885 155952161 + 0 NA Intergenic Intergenic -6656 ENSMUSG00000038259.4 ENSMUSG00000038259 ENSMUST00000040162 Gdf5 protein_coding Interval_112819 chr4 45284197 45284461 + 0 NA exon (ENSMUSG00000035615.12, exon 16 of 16) protein_coding-exon (ENSMUSG00000035615.12, exon 16 of 16) -29769 ENSMUSG00000035601.9 ENSMUSG00000035601 ENSMUST00000145756 Trmt10b protein_coding Interval_69558 chr16 94229645 94229982 + 0 NA exon (ENSMUSG00000040820.16, exon 6 of 6) protein_coding-exon (ENSMUSG00000040820.16, exon 6 of 6) -6801 ENSMUSG00000115044.1 ENSMUSG00000115044 ENSMUST00000227277 Gm48978 TEC Interval_18994 chr10 93619876 93621253 + 0 NA intron (ENSMUSG00000111366.1, intron 2 of 2) lincRNA-intron (ENSMUSG00000111366.1, intron 2 of 2) 1702 ENSMUSG00000111366.1 ENSMUSG00000111366 ENSMUST00000213334 Gm47156 lincRNA Interval_78475 chr18 13385090 13385512 + 0 NA Intergenic Intergenic 13212 ENSMUSG00000117367.1 ENSMUSG00000117367 ENSMUST00000235001 Gm50093 processed_pseudogene Interval_157776 chr8 73003957 73005356 + 0 NA intron (ENSMUSG00000004383.18, intron 7 of 15) protein_coding-intron (ENSMUSG00000004383.18, intron 6 of 14) -11856 ENSMUSG00000093140.1 ENSMUSG00000093140 ENSMUST00000175399 Mir28b miRNA Interval_94133 chr2 84599388 84599609 + 0 NA TTS (ENSMUSG00000034101.14) protein_coding-TTS (ENSMUSG00000034101.14) -6658 ENSMUSG00000118521.1 ENSMUSG00000118521 ENSMUST00000238924 AL928616.1 processed_pseudogene Interval_60282 chr15 72193469 72193932 + 0 NA intron (ENSMUSG00000116068.1, intron 2 of 3) lincRNA-intron (ENSMUSG00000116068.1, intron 2 of 3) 32354 ENSMUSG00000116068.1 ENSMUSG00000116068 ENSMUST00000229509 Gm49457 lincRNA Interval_132252 chr5 143625814 143626084 + 0 NA exon (ENSMUSG00000018001.18, exon 1 of 1) protein_coding-exon (ENSMUSG00000018001.18, exon 1 of 1) 3448 ENSMUSG00000018001.18 ENSMUSG00000018001 ENSMUST00000110727 Cyth3 protein_coding Interval_173244 chrX 75125029 75125866 + 0 NA TTS (ENSMUSG00000031402.12) protein_coding-TTS (ENSMUSG00000031402.12) 5539 ENSMUSG00000031402.12 ENSMUSG00000031402 ENSMUST00000127023 Mpp1 protein_coding Interval_7451 chr1 131454621 131454922 + 0 NA intron (ENSMUSG00000026425.15, intron 2 of 4) protein_coding-intron (ENSMUSG00000026425.15, intron 2 of 22) -7076 ENSMUSG00000099959.1 ENSMUSG00000099959 ENSMUST00000190146 Gm29487 processed_pseudogene Interval_105274 chr3 84445065 84446620 + 0 NA exon (ENSMUSG00000041842.15, exon 12 of 12) protein_coding-exon (ENSMUSG00000041842.15, exon 12 of 12) 34551 ENSMUSG00000041842.15 ENSMUSG00000041842 ENSMUST00000131065 Fhdc1 protein_coding Interval_60394 chr15 73466371 73466875 + 0 NA Intergenic Intergenic 30674 ENSMUSG00000115885.1 ENSMUSG00000115885 ENSMUST00000230637 Gm19811 processed_pseudogene Interval_85202 chr19 23707818 23708026 + 0 NA intron (ENSMUSG00000074925.4, intron 4 of 6) protein_coding-intron (ENSMUSG00000074925.4, intron 4 of 5) 20493 ENSMUSG00000074925.4 ENSMUSG00000074925 ENSMUST00000067077 Ptar1 protein_coding Interval_87597 chr19 53648498 53650158 + 0 NA Intergenic Intergenic 5970 ENSMUSG00000024974.10 ENSMUSG00000024974 ENSMUST00000171083 Smc3 protein_coding Interval_2631 chr1 42684244 42685186 + 0 NA intron (ENSMUSG00000060424.14, intron 1 of 2) lincRNA-intron (ENSMUSG00000060424.14, intron 1 of 3) 10110 ENSMUSG00000060424.14 ENSMUSG00000060424 ENSMUST00000177136 Pantr1 lincRNA Interval_20251 chr10 116438483 116438687 + 0 NA intron (ENSMUSG00000054934.10, intron 2 of 2) protein_coding-intron (ENSMUSG00000054934.10, intron 2 of 2) 20533 ENSMUSG00000020164.7 ENSMUSG00000020164 ENSMUST00000134586 Kcnmb4os1 antisense Interval_28180 chr11 73666552 73667086 + 0 NA TTS (ENSMUSG00000061246.6) polymorphic_pseudogene-TTS (ENSMUSG00000061246.6) 6770 ENSMUSG00000061246.6 ENSMUSG00000061246 ENSMUST00000134773 Olfr387-ps1 polymorphic_pseudogene Interval_70097 chr17 5295300 5296167 + 0 NA intron (ENSMUSG00000069729.14, intron 8 of 19) protein_coding-intron (ENSMUSG00000069729.14, intron 8 of 18) -93030 ENSMUSG00000101133.1 ENSMUSG00000101133 ENSMUST00000190732 Gm29050 antisense Interval_114030 chr4 62625157 62625692 + 0 NA intron (ENSMUSG00000059810.18, intron 3 of 10) protein_coding-intron (ENSMUSG00000059810.18, intron 12 of 19) 1715 ENSMUSG00000059810.18 ENSMUSG00000059810 ENSMUST00000153875 Rgs3 protein_coding Interval_117915 chr4 127027048 127027858 + 0 NA TTS (ENSMUSG00000028820.13) protein_coding-TTS (ENSMUSG00000028820.13) 3926 ENSMUSG00000028820.13 ENSMUSG00000028820 ENSMUST00000125453 Sfpq protein_coding Interval_22350 chr11 9010261 9011522 + 0 NA promoter-TSS (ENSMUSG00000020413.11) protein_coding-promoter-TSS (ENSMUSG00000020413.11) 237 ENSMUSG00000020413.11 ENSMUSG00000020413 ENSMUST00000127578 Hus1 protein_coding Interval_53468 chr14 57701867 57702557 + 0 NA TTS (ENSMUSG00000021959.16) protein_coding-TTS (ENSMUSG00000021959.16) 4199 ENSMUSG00000092358.1 ENSMUSG00000092358 ENSMUST00000172474 Gm20430 processed_pseudogene Interval_143960 chr7 18560048 18560905 + 0 NA exon (ENSMUSG00000070797.4, exon 4 of 5) protein_coding-exon (ENSMUSG00000070797.4, exon 4 of 5) 6829 ENSMUSG00000070797.4 ENSMUSG00000070797 ENSMUST00000094794 Psg27 protein_coding Interval_14145 chr10 28087543 28088852 + 0 NA intron (ENSMUSG00000019889.10, intron 1 of 2) protein_coding-intron (ENSMUSG00000019889.10, intron 1 of 31) -22007 ENSMUSG00000112432.1 ENSMUSG00000112432 ENSMUST00000218855 Gm18507 processed_pseudogene Interval_39447 chr12 87464664 87465319 + 0 NA intron (ENSMUSG00000021039.9, intron 2 of 13) protein_coding-intron (ENSMUSG00000021039.9, intron 2 of 13) 7278 ENSMUSG00000021039.9 ENSMUSG00000021039 ENSMUST00000223119 Snw1 protein_coding Interval_28346 chr11 75306851 75307598 + 0 NA exon (ENSMUSG00000000751.13, exon 15 of 18) protein_coding-exon (ENSMUSG00000000751.13, exon 15 of 18) 11384 ENSMUSG00000106179.1 ENSMUSG00000106179 ENSMUST00000198372 Gm47300 miRNA Interval_83890 chr19 5380526 5381306 + 0 NA promoter-TSS (ENSMUSG00000039148.5) protein_coding-promoter-TSS (ENSMUSG00000039148.5) 2330 ENSMUSG00000039148.5 ENSMUSG00000039148 ENSMUST00000235908 Sart1 protein_coding Interval_109963 chr3 152209719 152211402 + 0 NA promoter-TSS (ENSMUSG00000028035.13) protein_coding-promoter-TSS (ENSMUSG00000028035.13) 78 ENSMUSG00000028034.15 ENSMUSG00000028034 ENSMUST00000200207 Fubp1 protein_coding Interval_68488 chr16 78120247 78121077 + 0 NA Intergenic Intergenic 3562 ENSMUSG00000116609.1 ENSMUSG00000116609 ENSMUST00000231333 Gm5675 processed_pseudogene Interval_122941 chr5 27680402 27680934 + 0 NA intron (ENSMUSG00000061576.15, intron 12 of 12) protein_coding-intron (ENSMUSG00000061576.15, intron 16 of 25) 111023 ENSMUSG00000002221.11 ENSMUSG00000002221 ENSMUST00000199714 Paxip1 protein_coding Interval_169412 chr9 97062854 97063110 + 0 NA intron (ENSMUSG00000101365.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000101365.1, intron 1 of 2) 4325 ENSMUSG00000101365.1 ENSMUSG00000101365 ENSMUST00000186238 Gm19325 lincRNA Interval_174034 chrX 130615382 130615811 + 0 NA Intergenic Intergenic -53699 ENSMUSG00000083024.1 ENSMUSG00000083024 ENSMUST00000121102 Gm14982 processed_pseudogene Interval_57768 chr15 19365871 19366181 + 0 NA intron (ENSMUSG00000114971.1, intron 2 of 3) lincRNA-intron (ENSMUSG00000114971.1, intron 2 of 3) 29396 ENSMUSG00000114971.1 ENSMUSG00000114971 ENSMUST00000228706 Gm49162 lincRNA Interval_151676 chr7 125959531 125959900 + 0 NA intron (ENSMUSG00000046182.8, intron 2 of 6) protein_coding-intron (ENSMUSG00000046182.8, intron 2 of 6) 104732 ENSMUSG00000108376.1 ENSMUSG00000108376 ENSMUST00000206586 Gm44874 TEC Interval_96462 chr2 123903672 123903977 + 0 NA Intergenic Intergenic 226132 ENSMUSG00000085496.1 ENSMUSG00000085496 ENSMUST00000129584 4930517E11Rik lincRNA Interval_129817 chr5 122516122 122516500 + 0 NA Intergenic Intergenic 9522 ENSMUSG00000088583.1 ENSMUSG00000088583 ENSMUST00000157958 Gm22965 snRNA Interval_99121 chr2 157341416 157343641 + 0 NA intron (ENSMUSG00000027643.9, intron 1 of 4) protein_coding-intron (ENSMUSG00000027643.9, intron 1 of 4) 4978 ENSMUSG00000027643.9 ENSMUSG00000027643 ENSMUST00000126630 Ghrh protein_coding Interval_6582 chr1 117558498 117558766 + 0 NA Intergenic Intergenic -2598 ENSMUSG00000098815.1 ENSMUSG00000098815 ENSMUST00000184268 Gm27785 miRNA Interval_16675 chr10 66979054 66980572 + 0 NA Intergenic Intergenic -25262 ENSMUSG00000112925.1 ENSMUSG00000112925 ENSMUST00000218205 Gm31763 antisense Interval_7172 chr1 127456644 127456889 + 0 NA intron (ENSMUSG00000036155.13, intron 11 of 15) protein_coding-intron (ENSMUSG00000036155.13, intron 13 of 17) 49990 ENSMUSG00000103390.1 ENSMUSG00000103390 ENSMUST00000195573 Gm38301 TEC Interval_172650 chrX 39899735 39900336 + 0 NA intron (ENSMUSG00000086157.1, intron 1 of 7) processed_transcript-intron (ENSMUSG00000086157.1, intron 1 of 7) 29535 ENSMUSG00000086157.1 ENSMUSG00000086157 ENSMUST00000144412 Gm14643 processed_transcript Interval_141827 chr6 134761775 134762136 + 0 NA promoter-TSS (ENSMUSG00000030203.17) protein_coding-promoter-TSS (ENSMUSG00000030203.17) -855 ENSMUSG00000030203.17 ENSMUSG00000030203 ENSMUST00000149776 Dusp16 protein_coding Interval_124509 chr5 49848055 49849365 + 0 NA Intergenic Intergenic 53592 ENSMUSG00000105540.1 ENSMUSG00000105540 ENSMUST00000196623 Gm7988 processed_pseudogene Interval_9063 chr1 153358581 153358930 + 0 NA Intergenic Intergenic 53323 ENSMUSG00000079138.3 ENSMUSG00000079138 ENSMUST00000110797 Gm8818 processed_pseudogene Interval_4345 chr1 72847239 72847546 + 0 NA intron (ENSMUSG00000039323.18, intron 1 of 3) protein_coding-intron (ENSMUSG00000039323.18, intron 1 of 3) -1307 ENSMUSG00000039323.18 ENSMUSG00000039323 ENSMUST00000155703 Igfbp2 protein_coding Interval_4952 chr1 82902052 82902272 + 0 NA TTS (ENSMUSG00000026159.13) protein_coding-TTS (ENSMUSG00000026159.13) -11163 ENSMUSG00000113880.1 ENSMUSG00000113880 ENSMUST00000220768 A030005L19Rik protein_coding Interval_78649 chr18 16434529 16434883 + 0 NA Intergenic Intergenic -159762 ENSMUSG00000063628.2 ENSMUSG00000063628 ENSMUST00000076710 Gm7665 processed_pseudogene Interval_36074 chr12 35182515 35184718 + 0 NA Intergenic Intergenic 11281 ENSMUSG00000076253.1 ENSMUSG00000076253 ENSMUST00000102298 Mir680-3 miRNA Interval_157953 chr8 77239452 77239677 + 0 NA intron (ENSMUSG00000031618.13, intron 6 of 6) protein_coding-intron (ENSMUSG00000031618.13, intron 7 of 7) -43297 ENSMUSG00000110258.1 ENSMUSG00000110258 ENSMUST00000210161 Gm45406 antisense Interval_26486 chr11 58117038 58117341 + 0 NA TTS (ENSMUSG00000020515.13) protein_coding-TTS (ENSMUSG00000020515.13) -8879 ENSMUSG00000087629.1 ENSMUSG00000087629 ENSMUST00000129126 Gm12246 antisense Interval_140843 chr6 122297545 122298313 + 0 NA Intergenic Intergenic 2265 ENSMUSG00000108090.1 ENSMUSG00000108090 ENSMUST00000204884 Gm6637 processed_pseudogene Interval_72965 chr17 33857750 33858975 + 0 NA Intergenic Intergenic 5866 ENSMUSG00000092571.1 ENSMUSG00000092571 ENSMUST00000173244 Gm4134 unprocessed_pseudogene Interval_128822 chr5 115463985 115465828 + 0 NA Intergenic Intergenic -1360 ENSMUSG00000029522.12 ENSMUSG00000029522 ENSMUST00000125568 Pla2g1b protein_coding Interval_139302 chr6 98113535 98115030 + 0 NA Intergenic Intergenic -7514 ENSMUSG00000107902.1 ENSMUSG00000107902 ENSMUST00000205146 Gm32592 antisense Interval_109501 chr3 142982160 142982370 + 0 NA Intergenic Intergenic 19654 ENSMUSG00000078162.6 ENSMUSG00000078162 ENSMUST00000181051 Gm2574 processed_pseudogene Interval_157371 chr8 69915704 69916227 + 0 NA intron (ENSMUSG00000036180.15, intron 8 of 12) protein_coding-intron (ENSMUSG00000036180.15, intron 8 of 12) -13253 ENSMUSG00000048967.16 ENSMUSG00000048967 ENSMUST00000152456 Yjefn3 protein_coding Interval_60220 chr15 68336722 68336954 + 0 NA TTS (ENSMUSG00000065476.2) miRNA-TTS (ENSMUSG00000065476.2) 592 ENSMUSG00000096967.3 ENSMUSG00000096967 ENSMUST00000180413 Gm26621 processed_transcript Interval_48841 chr13 103965684 103965945 + 0 NA intron (ENSMUSG00000114276.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000114276.1, intron 1 of 1) 4310 ENSMUSG00000114276.1 ENSMUSG00000114276 ENSMUST00000225228 Gm47849 lincRNA Interval_102879 chr3 32494449 32494725 + 0 NA Intergenic Intergenic -2356 ENSMUSG00000091091.2 ENSMUSG00000091091 ENSMUST00000164954 Kcnmb3 protein_coding Interval_126185 chr5 81653846 81654513 + 0 NA intron (ENSMUSG00000037605.16, intron 11 of 12) protein_coding-intron (ENSMUSG00000037605.16, intron 9 of 24) -81748 ENSMUSG00000106611.1 ENSMUSG00000106611 ENSMUST00000104721 Gm22048 miRNA Interval_87352 chr19 47892590 47893072 + 0 NA intron (ENSMUSG00000044948.17, intron 1 of 13) protein_coding-intron (ENSMUSG00000044948.17, intron 1 of 13) 26419 ENSMUSG00000117975.1 ENSMUSG00000117975 ENSMUST00000237029 Itprip protein_coding Interval_139148 chr6 96165479 96166212 + 0 NA exon (ENSMUSG00000072878.4, exon 1 of 1) protein_coding-exon (ENSMUSG00000072878.4, exon 1 of 1) 398 ENSMUSG00000072878.4 ENSMUSG00000072878 ENSMUST00000090061 1700123L14Rik protein_coding Interval_46230 chr13 62802727 62803070 + 0 NA Intergenic Intergenic -10178 ENSMUSG00000113637.1 ENSMUSG00000113637 ENSMUST00000223520 Gm7049 processed_pseudogene Interval_33683 chr11 117901732 117902769 + 0 NA Intergenic Intergenic -19655 ENSMUSG00000082562.1 ENSMUSG00000082562 ENSMUST00000121028 Gm11726 processed_pseudogene Interval_68483 chr16 78000915 78002046 + 0 NA Intergenic Intergenic 8466 ENSMUSG00000116886.1 ENSMUSG00000116886 ENSMUST00000232575 Gm49589 processed_pseudogene Interval_141335 chr6 127364962 127365621 + 0 NA Intergenic Intergenic 3188 ENSMUSG00000107243.1 ENSMUSG00000107243 ENSMUST00000202011 Gm43631 processed_pseudogene Interval_5182 chr1 86308025 86309848 + 0 NA Intergenic Intergenic -4877 ENSMUSG00000099644.1 ENSMUSG00000099644 ENSMUST00000187004 Gm28626 antisense Interval_155542 chr8 34204150 34204407 + 0 NA Intergenic Intergenic -12581 ENSMUSG00000100605.1 ENSMUSG00000100605 ENSMUST00000188318 Gm29243 lincRNA Interval_106758 chr3 100495846 100496031 + 0 NA intron (ENSMUSG00000053957.5, intron 1 of 2) lincRNA-intron (ENSMUSG00000053957.5, intron 1 of 2) -1491 ENSMUSG00000104943.1 ENSMUSG00000104943 ENSMUST00000199168 Gm42868 sense_intronic Interval_155313 chr8 31168179 31171175 + 0 NA promoter-TSS (ENSMUSG00000031578.5) protein_coding-promoter-TSS (ENSMUSG00000031578.5) -983 ENSMUSG00000031578.5 ENSMUSG00000031578 ENSMUST00000209991 Mak16 protein_coding Interval_119810 chr4 140140651 140140988 + 0 NA intron (ENSMUSG00000040972.8, intron 2 of 9) protein_coding-intron (ENSMUSG00000040972.8, intron 2 of 9) -2054 ENSMUSG00000086164.1 ENSMUSG00000086164 ENSMUST00000137283 Gm13029 antisense Interval_138437 chr6 88196931 88200413 + 0 NA exon (ENSMUSG00000015053.14, exon 1 of 6) protein_coding-exon (ENSMUSG00000015053.14, exon 1 of 6) -2247 ENSMUSG00000015053.14 ENSMUSG00000015053 ENSMUST00000203579 Gata2 protein_coding Interval_111893 chr4 32305636 32306644 + 0 NA intron (ENSMUSG00000040270.16, intron 1 of 1) protein_coding-intron (ENSMUSG00000040270.16, intron 1 of 7) 54379 ENSMUSG00000087049.1 ENSMUSG00000087049 ENSMUST00000133451 Bach2it1 sense_intronic Interval_97654 chr2 142248465 142248882 + 0 NA intron (ENSMUSG00000068205.14, intron 6 of 13) protein_coding-intron (ENSMUSG00000068205.14, intron 11 of 17) 72066 ENSMUSG00000068205.14 ENSMUSG00000068205 ENSMUST00000156619 Macrod2 protein_coding Interval_82100 chr18 67731075 67732899 + 0 NA Intergenic Intergenic -41763 ENSMUSG00000024539.17 ENSMUSG00000024539 ENSMUST00000128169 Ptpn2 protein_coding Interval_11753 chr1 185209335 185210506 + 0 NA intron (ENSMUSG00000039318.12, intron 1 of 34) protein_coding-intron (ENSMUSG00000039318.12, intron 1 of 34) -32987 ENSMUSG00000077571.1 ENSMUSG00000077571 ENSMUST00000104383 Snora36b snoRNA Interval_105224 chr3 83980054 83981196 + 0 NA intron (ENSMUSG00000033767.14, intron 3 of 33) protein_coding-intron (ENSMUSG00000033767.14, intron 3 of 33) -73046 ENSMUSG00000033767.14 ENSMUSG00000033767 ENSMUST00000192811 Tmem131l protein_coding Interval_125840 chr5 74888714 74889101 + 0 NA Intergenic Intergenic 5572 ENSMUSG00000106806.1 ENSMUSG00000106806 ENSMUST00000202480 Gm17906 processed_pseudogene Interval_108233 chr3 122648905 122649226 + 0 NA Intergenic Intergenic -15794 ENSMUSG00000106562.1 ENSMUSG00000106562 ENSMUST00000199912 Gm5981 processed_pseudogene Interval_17418 chr10 76492955 76493942 + 0 NA exon (ENSMUSG00000001150.7, exon 16 of 29) protein_coding-exon (ENSMUSG00000001150.7, exon 16 of 29) 12247 ENSMUSG00000001150.7 ENSMUSG00000001150 ENSMUST00000218904 Mcm3ap protein_coding Interval_18664 chr10 88911349 88911714 + 0 NA intron (ENSMUSG00000020062.7, intron 10 of 14) protein_coding-intron (ENSMUSG00000020062.7, intron 10 of 14) 25539 ENSMUSG00000020062.7 ENSMUSG00000020062 ENSMUST00000020255 Slc5a8 protein_coding Interval_11013 chr1 178368296 178369813 + 0 NA Intergenic Intergenic -5533 ENSMUSG00000099303.1 ENSMUSG00000099303 ENSMUST00000185108 Gm27458 miRNA Interval_64873 chr16 16865405 16866898 + 0 NA Intergenic Intergenic -2166 ENSMUSG00000075370.12 ENSMUSG00000075370 ENSMUST00000231439 Igll1 protein_coding Interval_66663 chr16 35943249 35943511 + 0 NA exon (ENSMUSG00000022906.15, exon 3 of 9) protein_coding-exon (ENSMUSG00000022906.15, exon 3 of 9) -4229 ENSMUSG00000049502.17 ENSMUSG00000049502 ENSMUST00000114885 Dtx3l protein_coding Interval_85596 chr19 28967521 28967993 + 0 NA promoter-TSS (ENSMUSG00000064202.15) protein_coding-promoter-TSS (ENSMUSG00000064202.15) 3804 ENSMUSG00000040105.3 ENSMUSG00000040105 ENSMUST00000045674 Plpp6 protein_coding Interval_35703 chr12 28407782 28408256 + 0 NA Intergenic Intergenic 57756 ENSMUSG00000077792.1 ENSMUSG00000077792 ENSMUST00000104604 Gm25564 snoRNA Interval_168782 chr9 87015144 87016389 + 0 NA exon (ENSMUSG00000047897.10, exon 1 of 3) protein_coding-exon (ENSMUSG00000047897.10, exon 1 of 3) 130 ENSMUSG00000047897.10 ENSMUSG00000047897 ENSMUST00000188187 Ripply2 protein_coding Interval_66747 chr16 36969539 36971399 + 0 NA exon (ENSMUSG00000047746.14, exon 3 of 4) protein_coding-exon (ENSMUSG00000047746.14, exon 3 of 4) 8307 ENSMUSG00000047746.14 ENSMUSG00000047746 ENSMUST00000114806 Fbxo40 protein_coding Interval_129005 chr5 116571234 116571837 + 0 NA TTS (ENSMUSG00000106914.1) sense_intronic-TTS (ENSMUSG00000106914.1) 1960 ENSMUSG00000106914.1 ENSMUSG00000106914 ENSMUST00000201262 Gm42854 sense_intronic Interval_133481 chr6 5556244 5557011 + 0 NA Intergenic Intergenic -60366 ENSMUSG00000019577.6 ENSMUSG00000019577 ENSMUST00000134068 Pdk4 protein_coding Interval_30368 chr11 93916303 93916665 + 0 NA intron (ENSMUSG00000059474.13, intron 7 of 7) protein_coding-intron (ENSMUSG00000059474.13, intron 5 of 11) -9056 ENSMUSG00000059474.13 ENSMUSG00000059474 ENSMUST00000155841 Mbtd1 protein_coding Interval_120576 chr4 149476851 149478102 + 0 NA promoter-TSS (ENSMUSG00000087198.4) protein_coding-promoter-TSS (ENSMUSG00000087198.4) 52 ENSMUSG00000087198.4 ENSMUSG00000087198 ENSMUST00000229840 Tmem274 protein_coding Interval_2047 chr1 36101185 36101369 + 0 NA promoter-TSS (ENSMUSG00000045216.7) protein_coding-promoter-TSS (ENSMUSG00000045216.7) -413 ENSMUSG00000045216.7 ENSMUSG00000045216 ENSMUST00000194670 Hs6st1 protein_coding Interval_108222 chr3 122596227 122597355 + 0 NA intron (ENSMUSG00000039735.16, intron 1 of 14) protein_coding-intron (ENSMUSG00000039735.16, intron 1 of 13) -19719 ENSMUSG00000106364.1 ENSMUSG00000106364 ENSMUST00000195964 Gm42994 TEC Interval_57195 chr15 7382415 7382643 + 0 NA intron (ENSMUSG00000042961.13, intron 1 of 15) protein_coding-intron (ENSMUSG00000042961.13, intron 1 of 21) -15368 ENSMUSG00000090199.1 ENSMUSG00000090199 ENSMUST00000161643 Gm16029 antisense Interval_54093 chr14 65219726 65219974 + 0 NA intron (ENSMUSG00000007989.7, intron 4 of 6) protein_coding-intron (ENSMUSG00000007989.7, intron 1 of 2) 12731 ENSMUSG00000114878.1 ENSMUSG00000114878 ENSMUST00000224558 Gm9086 processed_pseudogene Interval_101591 chr3 7429298 7429615 + 0 NA intron (ENSMUSG00000027499.12, intron 1 of 2) protein_coding-intron (ENSMUSG00000027499.12, intron 1 of 2) 398 ENSMUSG00000027499.12 ENSMUSG00000027499 ENSMUST00000193330 Pkia protein_coding Interval_87415 chr19 49460215 49461246 + 0 NA Intergenic Intergenic -93288 ENSMUSG00000117931.1 ENSMUSG00000117931 ENSMUST00000238143 Gm50444 unprocessed_pseudogene Interval_9600 chr1 160099839 160100078 + 0 NA intron (ENSMUSG00000026725.17, intron 14 of 17) protein_coding-intron (ENSMUSG00000026725.17, intron 18 of 21) -22016 ENSMUSG00000026729.9 ENSMUSG00000026729 ENSMUST00000169600 4930562F07Rik lincRNA Interval_48475 chr13 99320005 99320360 + 0 NA exon (ENSMUSG00000021650.7, exon 10 of 10) protein_coding-exon (ENSMUSG00000021650.7, exon 10 of 10) 24523 ENSMUSG00000021650.7 ENSMUSG00000021650 ENSMUST00000022153 Ptcd2 protein_coding Interval_26842 chr11 60984947 60985449 + 0 NA Intergenic Intergenic 53144 ENSMUSG00000018932.9 ENSMUSG00000018932 ENSMUST00000137609 Map2k3 protein_coding Interval_167744 chr9 72452019 72452414 + 0 NA intron (ENSMUSG00000090626.9, intron 12 of 12) protein_coding-intron (ENSMUSG00000032221.14, intron 7 of 9) -10437 ENSMUSG00000098778.1 ENSMUSG00000098778 ENSMUST00000185191 Gm27231 antisense Interval_90777 chr2 32559797 32560467 + 0 NA TTS (ENSMUSG00000039157.12) protein_coding-TTS (ENSMUSG00000039157.12) -11915 ENSMUSG00000026810.12 ENSMUSG00000026810 ENSMUST00000150419 Dpm2 protein_coding Interval_82944 chr18 79899649 79899867 + 0 NA Intergenic Intergenic -23176 ENSMUSG00000098165.1 ENSMUSG00000098165 ENSMUST00000183151 Gm26977 processed_pseudogene Interval_111672 chr4 25674508 25674801 + 0 NA intron (ENSMUSG00000055373.8, intron 1 of 1) protein_coding-intron (ENSMUSG00000055373.8, intron 2 of 2) -107832 ENSMUSG00000065040.1 ENSMUSG00000065040 ENSMUST00000083106 Gm24977 snRNA Interval_76232 chr17 78256669 78257431 + 0 NA intron (ENSMUSG00000024074.8, intron 1 of 4) protein_coding-intron (ENSMUSG00000024074.8, intron 2 of 16) 19278 ENSMUSG00000024074.8 ENSMUSG00000024074 ENSMUST00000234439 Crim1 protein_coding Interval_153409 chr7 144489546 144489837 + 0 NA promoter-TSS (ENSMUSG00000037519.17) protein_coding-promoter-TSS (ENSMUSG00000037519.17) -2677 ENSMUSG00000037519.17 ENSMUSG00000037519 ENSMUST00000183106 Ppfia1 protein_coding Interval_59505 chr15 54744720 54746495 + 0 NA promoter-TSS (ENSMUSG00000037362.8) protein_coding-promoter-TSS (ENSMUSG00000037362.8) -95 ENSMUSG00000037362.8 ENSMUSG00000037362 ENSMUST00000050027 Ccn3 protein_coding Interval_139189 chr6 97045759 97046812 + 0 NA intron (ENSMUSG00000046500.8, intron 1 of 5) protein_coding-intron (ENSMUSG00000046500.8, intron 1 of 5) 14108 ENSMUSG00000046500.8 ENSMUSG00000046500 ENSMUST00000203930 Tafa4 protein_coding Interval_26813 chr11 60784209 60785166 + 0 NA exon (ENSMUSG00000049323.8, exon 2 of 2) protein_coding-exon (ENSMUSG00000049323.8, exon 2 of 2) 7163 ENSMUSG00000049323.8 ENSMUSG00000049323 ENSMUST00000056907 Smcr8 protein_coding Interval_135104 chr6 35373399 35374167 + 0 NA Intergenic Intergenic 42937 ENSMUSG00000107341.1 ENSMUSG00000107341 ENSMUST00000201560 1700065J11Rik lincRNA Interval_31129 chr11 98334075 98335469 + 0 NA Intergenic Intergenic -5124 ENSMUSG00000038255.6 ENSMUSG00000038255 ENSMUST00000041685 Neurod2 protein_coding Interval_17773 chr10 79996130 79997987 + 0 NA promoter-TSS (ENSMUSG00000035722.15) protein_coding-promoter-TSS (ENSMUSG00000035722.15) -518 ENSMUSG00000035722.15 ENSMUSG00000035722 ENSMUST00000043866 Abca7 protein_coding Interval_100024 chr2 166589507 166590256 + 0 NA intron (ENSMUSG00000039621.13, intron 17 of 37) protein_coding-intron (ENSMUSG00000039621.13, intron 19 of 39) 65261 ENSMUSG00000093063.1 ENSMUSG00000093063 ENSMUST00000175322 Gm23152 rRNA Interval_84725 chr19 15962300 15963948 + 0 NA intron (ENSMUSG00000041491.8, intron 10 of 13) protein_coding-intron (ENSMUSG00000041491.8, intron 11 of 14) -15787 ENSMUSG00000024640.9 ENSMUSG00000024640 ENSMUST00000162233 Psat1 protein_coding Interval_166180 chr9 57285460 57285719 + 0 NA Intergenic Intergenic -24080 ENSMUSG00000032300.7 ENSMUSG00000032300 ENSMUST00000217657 1700017B05Rik protein_coding Interval_40778 chr12 108305896 108308126 + 0 NA intron (ENSMUSG00000021260.8, intron 1 of 7) protein_coding-intron (ENSMUSG00000021260.8, intron 1 of 8) 463 ENSMUSG00000021260.8 ENSMUSG00000021260 ENSMUST00000223395 Hhipl1 protein_coding Interval_57214 chr15 7862974 7863999 + 0 NA Intergenic Intergenic 52640 ENSMUSG00000022144.4 ENSMUSG00000022144 ENSMUST00000022744 Gdnf protein_coding Interval_62014 chr15 85885607 85885969 + 0 NA intron (ENSMUSG00000022386.12, intron 3 of 5) protein_coding-intron (ENSMUSG00000022386.12, intron 3 of 10) 6374 ENSMUSG00000022386.12 ENSMUSG00000022386 ENSMUST00000159730 Trmu protein_coding Interval_136172 chr6 51707709 51708484 + 0 NA intron (ENSMUSG00000108145.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000108145.1, intron 1 of 1) 2985 ENSMUSG00000108145.1 ENSMUSG00000108145 ENSMUST00000203781 Gm38811 lincRNA Interval_102843 chr3 32065446 32065721 + 0 NA intron (ENSMUSG00000037610.15, intron 2 of 6) protein_coding-intron (ENSMUSG00000037610.15, intron 1 of 4) -90531 ENSMUSG00000037610.15 ENSMUSG00000037610 ENSMUST00000194796 Kcnmb2 protein_coding Interval_32849 chr11 111906041 111906607 + 0 NA Intergenic Intergenic -105448 ENSMUSG00000086752.1 ENSMUSG00000086752 ENSMUST00000124855 Gm11674 lincRNA Interval_19034 chr10 93929068 93929405 + 0 NA intron (ENSMUSG00000114757.1, intron 1 of 1) unitary_pseudogene-intron (ENSMUSG00000114757.1, intron 1 of 1) 10146 ENSMUSG00000114757.1 ENSMUSG00000114757 ENSMUST00000225546 Gm48126 unitary_pseudogene Interval_31877 chr11 103515136 103515766 + 0 NA Intergenic Intergenic -10854 ENSMUSG00000078632.4 ENSMUSG00000078632 ENSMUST00000153273 Lrrc37a protein_coding Interval_9861 chr1 163377201 163377945 + 0 NA Intergenic Intergenic -24710 ENSMUSG00000088951.1 ENSMUSG00000088951 ENSMUST00000158326 Gm24940 snRNA Interval_61416 chr15 81479650 81480255 + 0 NA Intergenic Intergenic 6429 ENSMUSG00000115917.1 ENSMUSG00000115917 ENSMUST00000231011 Gm49406 processed_pseudogene Interval_121663 chr5 4756381 4758432 + 0 NA exon (ENSMUSG00000044674.6, exon 1 of 1) protein_coding-exon (ENSMUSG00000044674.6, exon 1 of 1) 629 ENSMUSG00000044674.6 ENSMUSG00000044674 ENSMUST00000054294 Fzd1 protein_coding Interval_135445 chr6 39393254 39394270 + 0 NA Intergenic Intergenic 10968 ENSMUSG00000029922.15 ENSMUSG00000029922 ENSMUST00000114822 Mkrn1 protein_coding Interval_111110 chr4 12123790 12125273 + 0 NA promoter-TSS (ENSMUSG00000081593.1) processed_pseudogene-promoter-TSS (ENSMUSG00000081593.1) -759 ENSMUSG00000081593.1 ENSMUSG00000081593 ENSMUST00000117060 Gm11841 processed_pseudogene Interval_65390 chr16 22090460 22090747 + 0 NA intron (ENSMUSG00000033581.17, intron 2 of 14) protein_coding-intron (ENSMUSG00000033581.17, intron 2 of 15) 30633 ENSMUSG00000033581.17 ENSMUSG00000033581 ENSMUST00000127696 Igf2bp2 protein_coding Interval_7425 chr1 131228169 131228571 + 0 NA intron (ENSMUSG00000026430.16, intron 1 of 2) protein_coding-intron (ENSMUSG00000026430.16, intron 1 of 5) 5205 ENSMUSG00000026430.16 ENSMUSG00000026430 ENSMUST00000124796 Rassf5 protein_coding Interval_76980 chr17 85352727 85353364 + 0 NA intron (ENSMUSG00000071037.6, intron 3 of 10) protein_coding-intron (ENSMUSG00000071037.6, intron 3 of 10) -145588 ENSMUSG00000097803.1 ENSMUSG00000097803 ENSMUST00000181130 Rpl31-ps16 processed_pseudogene Interval_121155 chr4 153604492 153606361 + 0 NA Intergenic Intergenic -123247 ENSMUSG00000039546.9 ENSMUSG00000039546 ENSMUST00000149177 Ajap1 protein_coding Interval_112738 chr4 44511543 44512117 + 0 NA Intergenic Intergenic 95738 ENSMUSG00000092761.1 ENSMUSG00000092761 ENSMUST00000175020 Mir5120 miRNA Interval_21171 chr10 127030164 127031136 + 0 NA promoter-TSS (ENSMUSG00000040521.11) protein_coding-promoter-TSS (ENSMUSG00000040521.11) 153 ENSMUSG00000040521.11 ENSMUSG00000040521 ENSMUST00000134917 Tsfm protein_coding Interval_87137 chr19 46389848 46390103 + 0 NA intron (ENSMUSG00000025228.5, intron 1 of 1) protein_coding-intron (ENSMUSG00000025228.5, intron 1 of 10) 5750 ENSMUSG00000025228.5 ENSMUSG00000025228 ENSMUST00000237952 Actr1a protein_coding Interval_117508 chr4 124265346 124266568 + 0 NA Intergenic Intergenic 13220 ENSMUSG00000103541.1 ENSMUSG00000103541 ENSMUST00000193103 Gm37667 TEC Interval_169549 chr9 99077219 99077470 + 0 NA intron (ENSMUSG00000032462.14, intron 8 of 23) protein_coding-intron (ENSMUSG00000032462.14, intron 8 of 23) -41629 ENSMUSG00000044860.9 ENSMUSG00000044860 ENSMUST00000076730 Gm1123 protein_coding Interval_79096 chr18 24510607 24511296 + 0 NA intron (ENSMUSG00000040446.4, intron 1 of 5) protein_coding-intron (ENSMUSG00000040446.4, intron 1 of 6) 19143 ENSMUSG00000040446.4 ENSMUSG00000040446 ENSMUST00000234403 Rprd1a protein_coding Interval_69237 chr16 91596950 91598153 + 0 NA intron (ENSMUSG00000022964.14, intron 1 of 5) protein_coding-intron (ENSMUSG00000022964.14, intron 1 of 6) 249 ENSMUSG00000022964.14 ENSMUSG00000022964 ENSMUST00000141885 Tmem50b protein_coding Interval_61946 chr15 85410420 85410669 + 0 NA intron (ENSMUSG00000016541.10, intron 9 of 11) protein_coding-intron (ENSMUSG00000016541.10, intron 9 of 11) -59290 ENSMUSG00000064764.1 ENSMUSG00000064764 ENSMUST00000082830 Gm23517 snRNA Interval_2307 chr1 37948364 37949315 + 0 NA exon (ENSMUSG00000087374.1, exon 3 of 6) antisense-exon (ENSMUSG00000087374.1, exon 3 of 6) 160 ENSMUSG00000026085.11 ENSMUSG00000026085 ENSMUST00000114894 Lyg1 protein_coding Interval_25898 chr11 52409651 52409946 + 0 NA Intergenic Intergenic 4482 ENSMUSG00000080951.1 ENSMUSG00000080951 ENSMUST00000122004 Gm12208 processed_pseudogene Interval_15879 chr10 58690865 58691362 + 0 NA Intergenic Intergenic -5632 ENSMUSG00000091526.2 ENSMUSG00000091526 ENSMUST00000167536 BB019430 lincRNA Interval_76197 chr17 76852121 76852407 + 0 NA Intergenic Intergenic -30774 ENSMUSG00000117498.1 ENSMUSG00000117498 ENSMUST00000234836 Gm18366 processed_pseudogene Interval_51431 chr14 27451860 27452253 + 0 NA intron (ENSMUSG00000040651.9, intron 11 of 23) protein_coding-intron (ENSMUSG00000040651.9, intron 11 of 23) -25114 ENSMUSG00000040651.9 ENSMUSG00000040651 ENSMUST00000225139 Tasor protein_coding Interval_164725 chr9 40821462 40822429 + 0 NA exon (ENSMUSG00000110982.1, exon 1 of 1) TEC-exon (ENSMUSG00000110982.1, exon 1 of 1) 976 ENSMUSG00000110982.1 ENSMUSG00000110982 ENSMUST00000215895 Gm48565 TEC Interval_127464 chr5 104117610 104118142 + 0 NA exon (ENSMUSG00000097877.2, exon 4 of 4) antisense-exon (ENSMUSG00000097877.2, exon 4 of 4) -4437 ENSMUSG00000029309.7 ENSMUSG00000029309 ENSMUST00000199947 Sparcl1 protein_coding Interval_90796 chr2 32653143 32656298 + 0 NA intron (ENSMUSG00000026814.16, intron 1 of 14) protein_coding-intron (ENSMUSG00000026814.16, intron 1 of 14) 2391 ENSMUSG00000093336.1 ENSMUSG00000093336 ENSMUST00000175595 Mir1954 miRNA Interval_92899 chr2 68314591 68316031 + 0 NA intron (ENSMUSG00000027030.15, intron 3 of 10) protein_coding-intron (ENSMUSG00000027030.15, intron 10 of 17) 71370 ENSMUSG00000027030.15 ENSMUSG00000027030 ENSMUST00000149581 Stk39 protein_coding Interval_141602 chr6 130716847 130717074 + 0 NA Intergenic Intergenic 4658 ENSMUSG00000108104.1 ENSMUSG00000108104 ENSMUST00000205148 Gm20997 processed_pseudogene Interval_137972 chr6 83857758 83858291 + 0 NA Intergenic Intergenic -12041 ENSMUSG00000108750.1 ENSMUSG00000108750 ENSMUST00000206185 Gm44750 TEC Interval_29043 chr11 80032589 80033130 + 0 NA TTS (ENSMUSG00000017548.15) protein_coding-TTS (ENSMUSG00000017548.15) 39753 ENSMUSG00000017548.15 ENSMUSG00000017548 ENSMUST00000144188 Suz12 protein_coding Interval_97492 chr2 137559749 137560248 + 0 NA Intergenic Intergenic -103437 ENSMUSG00000085640.1 ENSMUSG00000085640 ENSMUST00000134833 Gm14064 lincRNA Interval_38959 chr12 84114240 84115005 + 0 NA intron (ENSMUSG00000042523.12, intron 1 of 8) protein_coding-intron (ENSMUSG00000042523.12, intron 1 of 7) 232 ENSMUSG00000042523.12 ENSMUSG00000042523 ENSMUST00000140812 Dnal1 protein_coding Interval_67891 chr16 58738352 58739434 + 0 NA Intergenic Intergenic 6629 ENSMUSG00000022744.12 ENSMUSG00000022744 ENSMUST00000162249 Cldnd1 protein_coding Interval_158805 chr8 86786295 86786932 + 0 NA Intergenic Intergenic -40679 ENSMUSG00000036840.5 ENSMUSG00000036840 ENSMUST00000045296 Siah1a protein_coding Interval_51508 chr14 29089944 29090538 + 0 NA intron (ENSMUSG00000021991.9, intron 14 of 15) protein_coding-intron (ENSMUSG00000021991.9, intron 17 of 37) 8939 ENSMUSG00000114595.1 ENSMUSG00000114595 ENSMUST00000225160 Gm48004 antisense Interval_160193 chr8 107056179 107057438 + 0 NA promoter-TSS (ENSMUSG00000031916.17) protein_coding-promoter-TSS (ENSMUSG00000031916.17) -98 ENSMUSG00000031917.12 ENSMUSG00000031917 ENSMUST00000212281 Nip7 protein_coding Interval_6428 chr1 107977725 107979029 + 0 NA intron (ENSMUSG00000100457.6, intron 3 of 3) lincRNA-intron (ENSMUSG00000100457.6, intron 3 of 3) -15070 ENSMUSG00000099484.1 ENSMUSG00000099484 ENSMUST00000186072 Gm28282 processed_pseudogene Interval_75648 chr17 69849776 69850322 + 0 NA Intergenic Intergenic 73946 ENSMUSG00000117233.1 ENSMUSG00000117233 ENSMUST00000232745 Gm36594 lincRNA Interval_159569 chr8 95512995 95513384 + 0 NA Intergenic Intergenic 16742 ENSMUSG00000110427.1 ENSMUSG00000110427 ENSMUST00000212927 4933406B17Rik lincRNA Interval_119494 chr4 137923145 137923484 + 0 NA intron (ENSMUSG00000057530.14, intron 3 of 4) protein_coding-intron (ENSMUSG00000057530.14, intron 4 of 19) 9843 ENSMUSG00000057530.14 ENSMUSG00000057530 ENSMUST00000129607 Ece1 protein_coding Interval_98901 chr2 155901397 155902256 + 0 NA intron (ENSMUSG00000005882.18, intron 2 of 6) protein_coding-intron (ENSMUSG00000005882.18, intron 4 of 6) 28450 ENSMUSG00000005882.18 ENSMUSG00000005882 ENSMUST00000142655 Uqcc1 protein_coding Interval_156277 chr8 46849122 46849726 + 0 NA Intergenic Intergenic -15512 ENSMUSG00000110414.1 ENSMUSG00000110414 ENSMUST00000209717 Gm45481 TEC Interval_71577 chr17 24649735 24650567 + 0 NA promoter-TSS (ENSMUSG00000002504.15) protein_coding-promoter-TSS (ENSMUSG00000002504.15) -158 ENSMUSG00000002504.15 ENSMUSG00000002504 ENSMUST00000235042 Slc9a3r2 protein_coding Interval_156378 chr8 47824250 47825485 + 0 NA exon (ENSMUSG00000038064.7, exon 1 of 1) protein_coding-exon (ENSMUSG00000038064.7, exon 1 of 1) 385 ENSMUSG00000038064.7 ENSMUSG00000038064 ENSMUST00000038693 Cldn22 protein_coding Interval_41570 chr12 116407740 116408109 + 0 NA intron (ENSMUSG00000042029.7, intron 2 of 3) protein_coding-intron (ENSMUSG00000042029.7, intron 3 of 28) -2714 ENSMUSG00000112980.1 ENSMUSG00000112980 ENSMUST00000220477 D430020J02Rik bidirectional_promoter_lncRNA Interval_70474 chr17 10457201 10457475 + 0 NA intron (ENSMUSG00000089633.2, intron 1 of 1) protein_coding-intron (ENSMUSG00000037196.6, intron 4 of 4) 1122 ENSMUSG00000089633.2 ENSMUSG00000089633 ENSMUST00000160738 A230009B12Rik antisense Interval_151400 chr7 122094554 122094833 + 0 NA promoter-TSS (ENSMUSG00000030869.11) protein_coding-promoter-TSS (ENSMUSG00000030869.11) -1390 ENSMUSG00000108573.1 ENSMUSG00000108573 ENSMUST00000206292 Gm44986 TEC Interval_9689 chr1 161051754 161052100 + 0 NA intron (ENSMUSG00000026709.10, intron 9 of 14) protein_coding-intron (ENSMUSG00000026709.10, intron 10 of 16) 11307 ENSMUSG00000102864.1 ENSMUSG00000102864 ENSMUST00000195700 Gm37634 antisense Interval_137011 chr6 66356003 66356258 + 0 NA Intergenic Intergenic 42586 ENSMUSG00000107837.1 ENSMUSG00000107837 ENSMUST00000203090 Gm44281 processed_pseudogene Interval_90965 chr2 33781279 33782280 + 0 NA intron (ENSMUSG00000038740.9, intron 7 of 9) protein_coding-intron (ENSMUSG00000038740.9, intron 7 of 9) 6980 ENSMUSG00000038740.9 ENSMUSG00000038740 ENSMUST00000146892 Mvb12b protein_coding Interval_48205 chr13 97167364 97168087 + 0 NA intron (ENSMUSG00000021666.16, intron 15 of 15) protein_coding-intron (ENSMUSG00000021666.16, intron 15 of 20) 29717 ENSMUSG00000021666.16 ENSMUSG00000021666 ENSMUST00000159321 Gfm2 protein_coding Interval_134795 chr6 31605827 31606065 + 0 NA intron (ENSMUSG00000086804.8, intron 1 of 1) lincRNA-intron (ENSMUSG00000086804.8, intron 1 of 2) 30979 ENSMUSG00000086732.1 ENSMUSG00000086732 ENSMUST00000150540 Gm6117 lincRNA Interval_161191 chr8 118393802 118395027 + 0 NA intron (ENSMUSG00000031841.19, intron 2 of 8) protein_coding-intron (ENSMUSG00000031841.19, intron 1 of 13) -12223 ENSMUSG00000110662.1 ENSMUSG00000110662 ENSMUST00000213075 Gm45722 processed_pseudogene Interval_166683 chr9 61898364 61898659 + 0 NA Intergenic Intergenic 16031 ENSMUSG00000007892.8 ENSMUSG00000007892 ENSMUST00000008036 Rplp1 protein_coding Interval_72021 chr17 27602539 27603700 + 0 NA intron (ENSMUSG00000117338.1, intron 5 of 8) protein_coding-intron (ENSMUSG00000024213.14, intron 1 of 4) -5904 ENSMUSG00000024213.14 ENSMUSG00000024213 ENSMUST00000146321 Nudt3 protein_coding Interval_51347 chr14 26598070 26598590 + 0 NA intron (ENSMUSG00000040818.10, intron 3 of 15) protein_coding-intron (ENSMUSG00000040818.10, intron 3 of 19) -6341 ENSMUSG00000040818.10 ENSMUSG00000040818 ENSMUST00000225206 Dennd6a protein_coding Interval_31824 chr11 103161181 103161976 + 0 NA Intergenic Intergenic -9529 ENSMUSG00000055805.15 ENSMUSG00000055805 ENSMUST00000129726 Fmnl1 protein_coding Interval_95565 chr2 112344063 112344311 + 0 NA exon (ENSMUSG00000027130.15, exon 11 of 25) protein_coding-exon (ENSMUSG00000027130.15, exon 11 of 25) -10015 ENSMUSG00000027130.15 ENSMUSG00000027130 ENSMUST00000137896 Slc12a6 protein_coding Interval_66706 chr16 36494653 36495770 + 0 NA exon (ENSMUSG00000051980.13, exon 7 of 7) protein_coding-exon (ENSMUSG00000051980.13, exon 7 of 7) 17439 ENSMUSG00000089118.1 ENSMUSG00000089118 ENSMUST00000158493 Gm25902 misc_RNA Interval_22067 chr11 6123402 6124499 + 0 NA exon (ENSMUSG00000053838.14, exon 3 of 3) protein_coding-exon (ENSMUSG00000053838.14, exon 3 of 3) 49086 ENSMUSG00000083022.1 ENSMUSG00000083022 ENSMUST00000117476 Rps15a-ps6 processed_pseudogene Interval_130013 chr5 123707563 123707750 + 0 NA TTS (ENSMUSG00000029427.11) protein_coding-TTS (ENSMUSG00000029427.11) 13118 ENSMUSG00000029427.11 ENSMUSG00000029427 ENSMUST00000200503 Zcchc8 protein_coding Interval_13965 chr10 25145926 25146571 + 0 NA Intergenic Intergenic 74443 ENSMUSG00000039166.16 ENSMUSG00000039166 ENSMUST00000176231 Akap7 protein_coding Interval_48605 chr13 100611512 100612164 + 0 NA exon (ENSMUSG00000021636.15, exon 2 of 7) protein_coding-exon (ENSMUSG00000021636.15, exon 2 of 7) 4864 ENSMUSG00000021636.15 ENSMUSG00000021636 ENSMUST00000168772 Marveld2 protein_coding Interval_154399 chr8 15609150 15609530 + 0 NA intron (ENSMUSG00000110217.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000110217.1, intron 1 of 2) -20641 ENSMUSG00000110201.1 ENSMUSG00000110201 ENSMUST00000211202 Gm45675 TEC Interval_151380 chr7 121968153 121969004 + 0 NA intron (ENSMUSG00000034951.10, intron 4 of 16) protein_coding-intron (ENSMUSG00000034951.10, intron 4 of 16) -13183 ENSMUSG00000108511.1 ENSMUSG00000108511 ENSMUST00000206578 Gm44987 antisense Interval_135122 chr6 35777781 35778345 + 0 NA Intergenic Intergenic -148648 ENSMUSG00000107145.1 ENSMUSG00000107145 ENSMUST00000202865 Gm43442 processed_pseudogene Interval_71064 chr17 17597833 17598072 + 0 NA intron (ENSMUSG00000023845.7, intron 1 of 10) protein_coding-intron (ENSMUSG00000023845.7, intron 1 of 17) -3176 ENSMUSG00000116796.1 ENSMUSG00000116796 ENSMUST00000232626 Gm49784 TEC Interval_26261 chr11 55492198 55492983 + 0 NA intron (ENSMUSG00000018583.5, intron 5 of 11) protein_coding-intron (ENSMUSG00000018583.5, intron 5 of 11) -8636 ENSMUSG00000098906.1 ENSMUSG00000098906 ENSMUST00000185156 Mir7652 miRNA Interval_722 chr1 10140348 10142098 + 0 NA intron (ENSMUSG00000067851.11, intron 1 of 2) protein_coding-intron (ENSMUSG00000067851.11, intron 36 of 37) 478 ENSMUSG00000067851.11 ENSMUSG00000067851 ENSMUST00000186720 Arfgef1 protein_coding Interval_34624 chr12 8087885 8088338 + 0 NA intron (ENSMUSG00000112694.1, intron 2 of 3) antisense-intron (ENSMUSG00000112694.1, intron 2 of 3) 110463 ENSMUSG00000020609.14 ENSMUSG00000020609 ENSMUST00000171239 Apob protein_coding Interval_38942 chr12 83995199 83995490 + 0 NA Intergenic Intergenic 7483 ENSMUSG00000021226.7 ENSMUSG00000021226 ENSMUST00000021649 Acot2 protein_coding Interval_33214 chr11 115264871 115267370 + 0 NA promoter-TSS (ENSMUSG00000020734.13) protein_coding-promoter-TSS (ENSMUSG00000020734.13) 1123 ENSMUSG00000020734.13 ENSMUSG00000020734 ENSMUST00000106554 Grin2c protein_coding Interval_169862 chr9 102561263 102561699 + 0 NA intron (ENSMUSG00000100279.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000100279.1, intron 1 of 1) 2181 ENSMUSG00000100279.1 ENSMUSG00000100279 ENSMUST00000189074 Gm29387 lincRNA Interval_140864 chr6 122446338 122447134 + 0 NA TTS (ENSMUSG00000040649.15) protein_coding-TTS (ENSMUSG00000040649.15) -10168 ENSMUSG00000055093.10 ENSMUSG00000055093 ENSMUST00000119780 Gm8430 processed_pseudogene Interval_34078 chr11 120377903 120379465 + 0 NA promoter-TSS (ENSMUSG00000025384.15) protein_coding-promoter-TSS (ENSMUSG00000025384.15) 52 ENSMUSG00000025384.15 ENSMUSG00000025384 ENSMUST00000152346 Faap100 protein_coding Interval_136593 chr6 56304264 56304586 + 0 NA intron (ENSMUSG00000004347.17, intron 4 of 19) protein_coding-intron (ENSMUSG00000004347.17, intron 2 of 18) -131394 ENSMUSG00000106152.1 ENSMUSG00000106152 ENSMUST00000198921 Gm44413 miRNA Interval_102504 chr3 27269905 27270824 + 0 NA intron (ENSMUSG00000027698.14, intron 3 of 4) protein_coding-intron (ENSMUSG00000027698.14, intron 3 of 4) -7696 ENSMUSG00000102186.1 ENSMUSG00000102186 ENSMUST00000193346 Gm37191 processed_pseudogene Interval_126 GL456370.1 6566 6753 + 0 NA NA NA NA NA Interval_26224 chr11 55235173 55235649 + 0 NA exon (ENSMUSG00000020261.15, exon 11 of 11) protein_coding-exon (ENSMUSG00000020261.15, exon 11 of 11) 31049 ENSMUSG00000020261.15 ENSMUSG00000020261 ENSMUST00000108867 Slc36a1 protein_coding Interval_102785 chr3 31011049 31011492 + 0 NA intron (ENSMUSG00000037643.14, intron 1 of 7) protein_coding-intron (ENSMUSG00000037643.14, intron 1 of 17) -27180 ENSMUSG00000037643.14 ENSMUSG00000037643 ENSMUST00000130706 Prkci protein_coding Interval_59960 chr15 62240505 62241102 + 0 NA intron (ENSMUSG00000097039.8, intron 1 of 2) lincRNA-intron (ENSMUSG00000097039.8, intron 5 of 8) -21471 ENSMUSG00000101167.1 ENSMUSG00000101167 ENSMUST00000151919 Macroh2a3 processed_pseudogene Interval_78236 chr18 10536337 10536684 + 0 NA intron (ENSMUSG00000042942.18, intron 6 of 13) protein_coding-intron (ENSMUSG00000042942.18, intron 19 of 32) 14896 ENSMUSG00000084693.1 ENSMUSG00000084693 ENSMUST00000122744 Gm24894 snoRNA Interval_39161 chr12 85517264 85517541 + 0 NA Intergenic Intergenic -12196 ENSMUSG00000114163.1 ENSMUSG00000114163 ENSMUST00000220590 Gm32296 lincRNA Interval_52458 chr14 46639608 46639811 + 0 NA Intergenic Intergenic -2301 ENSMUSG00000115781.1 ENSMUSG00000115781 ENSMUST00000228523 Gm49319 processed_transcript Interval_160509 chr8 110145558 110146017 + 0 NA intron (ENSMUSG00000003657.9, intron 9 of 10) protein_coding-intron (ENSMUSG00000003657.9, intron 9 of 10) 22423 ENSMUSG00000003657.9 ENSMUSG00000003657 ENSMUST00000003754 Calb2 protein_coding Interval_68556 chr16 78621827 78622052 + 0 NA Intergenic Intergenic -2808 ENSMUSG00000093988.1 ENSMUSG00000093988 ENSMUST00000083459 Gm24861 snRNA Interval_111775 chr4 28484585 28484867 + 0 NA Intergenic Intergenic 1732 ENSMUSG00000082359.1 ENSMUSG00000082359 ENSMUST00000117755 Gm11908 processed_pseudogene Interval_79267 chr18 28757505 28757831 + 0 NA Intergenic Intergenic 45807 ENSMUSG00000117478.1 ENSMUSG00000117478 ENSMUST00000234187 BC051408 lincRNA Interval_129043 chr5 117065127 117065995 + 0 NA Intergenic Intergenic 6749 ENSMUSG00000107327.1 ENSMUSG00000107327 ENSMUST00000201054 Gm7478 processed_pseudogene Interval_2796 chr1 45431697 45432122 + 0 NA intron (ENSMUSG00000026042.16, intron 6 of 15) protein_coding-intron (ENSMUSG00000026042.16, intron 6 of 53) -38275 ENSMUSG00000026042.16 ENSMUSG00000026042 ENSMUST00000131535 Col5a2 protein_coding Interval_162415 chr8 128368895 128369106 + 0 NA intron (ENSMUSG00000025810.9, intron 2 of 7) protein_coding-intron (ENSMUSG00000025810.9, intron 2 of 16) 9603 ENSMUSG00000025810.9 ENSMUSG00000025810 ENSMUST00000212933 Nrp1 protein_coding Interval_101626 chr3 8102516 8102853 + 0 NA Intergenic Intergenic -111648 ENSMUSG00000103725.1 ENSMUSG00000103725 ENSMUST00000195642 Gm7103 processed_pseudogene Interval_116917 chr4 118216508 118217196 + 0 NA intron (ENSMUSG00000033295.14, intron 14 of 24) protein_coding-intron (ENSMUSG00000033295.14, intron 22 of 32) -6288 ENSMUSG00000098596.1 ENSMUSG00000098596 ENSMUST00000184953 Mir7226 miRNA Interval_38488 chr12 79449368 79450226 + 0 NA intron (ENSMUSG00000059060.15, intron 1 of 2) protein_coding-intron (ENSMUSG00000059060.15, intron 7 of 7) 122444 ENSMUSG00000059060.15 ENSMUSG00000059060 ENSMUST00000221257 Rad51b protein_coding Interval_55496 chr14 89116331 89116692 + 0 NA Intergenic Intergenic -234514 ENSMUSG00000102164.1 ENSMUSG00000102164 ENSMUST00000192706 Gm36946 TEC Interval_100350 chr2 168577368 168577564 + 0 NA intron (ENSMUSG00000027544.16, intron 1 of 6) protein_coding-intron (ENSMUSG00000027544.16, intron 1 of 6) 24189 ENSMUSG00000027544.16 ENSMUSG00000027544 ENSMUST00000138546 Nfatc2 protein_coding Interval_135770 chr6 47187390 47189210 + 0 NA intron (ENSMUSG00000039419.17, intron 20 of 23) protein_coding-intron (ENSMUSG00000039419.17, intron 20 of 23) 143144 ENSMUSG00000107952.1 ENSMUSG00000107952 ENSMUST00000203583 Gm6352 processed_pseudogene Interval_66271 chr16 32766942 32768044 + 0 NA exon (ENSMUSG00000079620.13, exon 14 of 27) protein_coding-exon (ENSMUSG00000079620.13, exon 14 of 27) -10044 ENSMUSG00000079620.13 ENSMUSG00000079620 ENSMUST00000131419 Muc4 protein_coding Interval_128739 chr5 115021590 115022253 + 0 NA intron (ENSMUSG00000029550.11, intron 2 of 2) protein_coding-intron (ENSMUSG00000029550.11, intron 1 of 10) -17849 ENSMUSG00000107054.1 ENSMUSG00000107054 ENSMUST00000201944 C730045M19Rik TEC Interval_113525 chr4 55530054 55533888 + 0 NA promoter-TSS (ENSMUSG00000003032.8) protein_coding-promoter-TSS (ENSMUSG00000003032.8) 482 ENSMUSG00000003032.8 ENSMUSG00000003032 ENSMUST00000132746 Klf4 protein_coding Interval_10422 chr1 170699769 170700140 + 0 NA Intergenic Intergenic 51869 ENSMUSG00000096310.1 ENSMUSG00000096310 ENSMUST00000180190 Gm23523 snRNA Interval_31432 chr11 100622756 100623180 + 0 NA promoter-TSS (ENSMUSG00000017837.12) protein_coding-promoter-TSS (ENSMUSG00000017837.12) 20 ENSMUSG00000017837.12 ENSMUSG00000017837 ENSMUST00000142993 Nkiras2 protein_coding Interval_86014 chr19 34921344 34922792 + 0 NA promoter-TSS (ENSMUSG00000024795.11) protein_coding-promoter-TSS (ENSMUSG00000024795.11) -43328 ENSMUSG00000089151.1 ENSMUSG00000089151 ENSMUST00000158526 Mir1950 miRNA Interval_108374 chr3 126349806 126349999 + 0 NA Intergenic Intergenic -13782 ENSMUSG00000046561.9 ENSMUSG00000046561 ENSMUST00000093976 Arsj protein_coding Interval_113572 chr4 56772062 56773270 + 0 NA promoter-TSS (ENSMUSG00000028431.11) protein_coding-promoter-TSS (ENSMUSG00000028431.11) -10625 ENSMUSG00000080370.1 ENSMUSG00000080370 ENSMUST00000116720 Gm22952 snoRNA Interval_7707 chr1 133181068 133182933 + 0 NA intron (ENSMUSG00000041757.17, intron 1 of 22) protein_coding-intron (ENSMUSG00000041757.17, intron 1 of 22) -50218 ENSMUSG00000102425.1 ENSMUSG00000102425 ENSMUST00000193049 Gm26616 TEC Interval_67481 chr16 49652613 49653480 + 0 NA Intergenic Intergenic -46258 ENSMUSG00000032965.11 ENSMUSG00000032965 ENSMUST00000140914 Ift57 protein_coding Interval_85961 chr19 34241432 34241638 + 0 NA exon (ENSMUSG00000035783.9, exon 9 of 9) protein_coding-exon (ENSMUSG00000035783.9, exon 9 of 9) 12695 ENSMUSG00000035783.9 ENSMUSG00000035783 ENSMUST00000238147 Acta2 protein_coding Interval_42504 chr13 14244942 14245135 + 0 NA TTS (ENSMUSG00000021301.9) protein_coding-TTS (ENSMUSG00000021301.9) -23100 ENSMUSG00000113563.1 ENSMUSG00000113563 ENSMUST00000221355 Gm2492 processed_pseudogene Interval_125620 chr5 72808397 72809257 + 0 NA intron (ENSMUSG00000029217.16, intron 3 of 9) protein_coding-intron (ENSMUSG00000029217.16, intron 3 of 18) 3247 ENSMUSG00000106739.1 ENSMUSG00000106739 ENSMUST00000202091 Gm43499 TEC Interval_107922 chr3 116844086 116845743 + 0 NA TTS (ENSMUSG00000105250.1) processed_pseudogene-TTS (ENSMUSG00000105250.1) 335 ENSMUSG00000105250.1 ENSMUSG00000105250 ENSMUST00000198189 Gm29736 processed_pseudogene Interval_71206 chr17 21124647 21124839 + 0 NA Intergenic Intergenic -4608 ENSMUSG00000096857.1 ENSMUSG00000096857 ENSMUST00000170486 Gm7732 processed_pseudogene Interval_15271 chr10 43984653 43984862 + 0 NA intron (ENSMUSG00000019866.15, intron 8 of 21) protein_coding-intron (ENSMUSG00000019866.15, intron 6 of 19) -19397 ENSMUSG00000075162.3 ENSMUSG00000075162 ENSMUST00000099864 Gm10812 pseudogene Interval_55648 chr14 98022111 98023082 + 0 NA intron (ENSMUSG00000055639.16, intron 1 of 9) protein_coding-intron (ENSMUSG00000055639.16, intron 1 of 10) -54605 ENSMUSG00000089549.1 ENSMUSG00000089549 ENSMUST00000158924 Gm25831 snRNA Interval_100496 chr2 169632124 169634228 + 0 NA promoter-TSS (ENSMUSG00000047907.11) protein_coding-promoter-TSS (ENSMUSG00000047907.11) -4858 ENSMUSG00000103662.1 ENSMUSG00000103662 ENSMUST00000191912 Gm34294 TEC Interval_25682 chr11 50751099 50751438 + 0 NA intron (ENSMUSG00000036545.9, intron 4 of 20) protein_coding-intron (ENSMUSG00000036545.9, intron 4 of 21) -25724 ENSMUSG00000085902.1 ENSMUSG00000085902 ENSMUST00000144876 Gm12200 antisense Interval_1224 chr1 17411895 17412248 + 0 NA Intergenic Intergenic -11790 ENSMUSG00000101589.1 ENSMUSG00000101589 ENSMUST00000186192 Rbm6-ps1 processed_pseudogene Interval_45863 chr13 58610265 58611125 + 0 NA intron (ENSMUSG00000021553.14, intron 1 of 3) protein_coding-intron (ENSMUSG00000021553.14, intron 1 of 17) 182 ENSMUSG00000021553.14 ENSMUSG00000021553 ENSMUST00000151675 Slc28a3 protein_coding Interval_110717 chr4 6827109 6827354 + 0 NA intron (ENSMUSG00000041272.11, intron 2 of 2) protein_coding-intron (ENSMUSG00000041272.11, intron 2 of 8) 139062 ENSMUSG00000086052.1 ENSMUSG00000086052 ENSMUST00000137749 Gm11802 antisense Interval_43630 chr13 34229168 34229403 + 0 NA intron (ENSMUSG00000038267.15, intron 3 of 9) protein_coding-intron (ENSMUSG00000038267.15, intron 3 of 10) 47967 ENSMUSG00000088573.1 ENSMUSG00000088573 ENSMUST00000157948 Gm24530 misc_RNA Interval_60529 chr15 74658989 74660280 + 0 NA Intergenic Intergenic 12936 ENSMUSG00000022602.14 ENSMUSG00000022602 ENSMUST00000110009 Arc protein_coding Interval_42258 chr13 11146580 11146887 + 0 NA Intergenic Intergenic 172310 ENSMUSG00000113673.1 ENSMUSG00000113673 ENSMUST00000221075 Gm47486 lincRNA Interval_26619 chr11 59266720 59267357 + 0 NA intron (ENSMUSG00000009900.7, intron 2 of 3) protein_coding-intron (ENSMUSG00000009900.7, intron 2 of 3) 23714 ENSMUSG00000009900.7 ENSMUSG00000009900 ENSMUST00000010044 Wnt3a protein_coding Interval_71616 chr17 24877976 24878877 + 0 NA promoter-TSS (ENSMUSG00000046070.9) protein_coding-intron (ENSMUSG00000046070.9, intron 1 of 1) 770 ENSMUSG00000046070.9 ENSMUSG00000046070 ENSMUST00000234754 Igfals protein_coding Interval_100657 chr2 170860824 170861133 + 0 NA intron (ENSMUSG00000027560.4, intron 6 of 7) protein_coding-intron (ENSMUSG00000027560.4, intron 6 of 7) 93846 ENSMUSG00000080955.1 ENSMUSG00000080955 ENSMUST00000117955 Gm14263 processed_pseudogene Interval_85308 chr19 24540696 24541539 + 0 NA intron (ENSMUSG00000024867.14, intron 1 of 3) protein_coding-intron (ENSMUSG00000024867.14, intron 1 of 14) 14721 ENSMUSG00000024867.14 ENSMUSG00000024867 ENSMUST00000145829 Pip5k1b protein_coding Interval_135132 chr6 36160435 36160751 + 0 NA Intergenic Intergenic 28506 ENSMUSG00000107089.1 ENSMUSG00000107089 ENSMUST00000202337 Gm43443 TEC Interval_174235 chrX 140478538 140479651 + 0 NA Intergenic Intergenic 22481 ENSMUSG00000031432.3 ENSMUSG00000031432 ENSMUST00000033809 Prps1 protein_coding Interval_124473 chr5 48586273 48586519 + 0 NA intron (ENSMUSG00000029088.16, intron 1 of 8) protein_coding-intron (ENSMUSG00000029088.16, intron 1 of 8) -4493 ENSMUSG00000093502.2 ENSMUSG00000093502 ENSMUST00000176749 Gm20700 antisense Interval_132652 chr5 146969827 146970298 + 0 NA Intergenic Intergenic -6262 ENSMUSG00000016510.11 ENSMUSG00000016510 ENSMUST00000140526 Mtif3 protein_coding Interval_32761 chr11 110387392 110387688 + 0 NA Intergenic Intergenic -49824 ENSMUSG00000018800.14 ENSMUSG00000018800 ENSMUST00000148984 Abca5 protein_coding Interval_61552 chr15 82285099 82286729 + 0 NA TTS (ENSMUSG00000022456.18) protein_coding-TTS (ENSMUSG00000022456.18) -13040 ENSMUSG00000022455.4 ENSMUSG00000022455 ENSMUST00000023089 Wbp2nl protein_coding Interval_150603 chr7 112751703 112752023 + 0 NA intron (ENSMUSG00000055320.18, intron 1 of 13) protein_coding-intron (ENSMUSG00000055320.18, intron 1 of 13) 37912 ENSMUSG00000106046.1 ENSMUSG00000106046 ENSMUST00000199696 Gm44462 miRNA Interval_79381 chr18 31460517 31460704 + 0 NA Intergenic Intergenic 5757 ENSMUSG00000077169.1 ENSMUSG00000077169 ENSMUST00000103981 Gm25396 snoRNA Interval_80552 chr18 43932850 43933115 + 0 NA intron (ENSMUSG00000118006.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000118006.1, intron 1 of 1) -30253 ENSMUSG00000055561.9 ENSMUSG00000055561 ENSMUST00000069245 Spink5 protein_coding Interval_24729 chr11 36295981 36296274 + 0 NA intron (ENSMUSG00000049336.16, intron 4 of 28) protein_coding-intron (ENSMUSG00000049336.16, intron 4 of 28) 18086 ENSMUSG00000086375.1 ENSMUSG00000086375 ENSMUST00000123278 Gm12127 antisense Interval_145794 chr7 38376508 38376822 + 0 NA Intergenic Intergenic -3684 ENSMUSG00000094848.1 ENSMUSG00000094848 ENSMUST00000179674 Gm22638 snRNA Interval_2484 chr1 39685995 39686369 + 0 NA intron (ENSMUSG00000057173.8, intron 7 of 14) protein_coding-intron (ENSMUSG00000057173.8, intron 3 of 6) -34708 ENSMUSG00000050967.5 ENSMUSG00000050967 ENSMUST00000053355 Creg2 protein_coding Interval_133060 chr5 149574577 149574871 + 0 NA intron (ENSMUSG00000029658.17, intron 8 of 22) protein_coding-intron (ENSMUSG00000029658.17, intron 8 of 22) -36694 ENSMUSG00000107132.1 ENSMUSG00000107132 ENSMUST00000202188 Gm15997 antisense Interval_72826 chr17 32417993 32418470 + 0 NA exon (ENSMUSG00000079563.10, exon 2 of 5) protein_coding-exon (ENSMUSG00000079563.10, exon 2 of 5) 2744 ENSMUSG00000079563.10 ENSMUSG00000079563 ENSMUST00000236703 Pglyrp2 protein_coding Interval_77044 chr17 85974739 85975097 + 0 NA Intergenic Intergenic -46339 ENSMUSG00000117501.1 ENSMUSG00000117501 ENSMUST00000234707 Gm30117 lincRNA Interval_134265 chr6 24196362 24198192 + 0 NA Intergenic Intergenic 53909 ENSMUSG00000096522.1 ENSMUSG00000096522 ENSMUST00000178407 Gm26386 miRNA Interval_9129 chr1 153891735 153892121 + 0 NA exon (ENSMUSG00000047053.5, exon 1 of 1) protein_coding-exon (ENSMUSG00000047053.5, exon 1 of 1) 186 ENSMUSG00000047053.5 ENSMUSG00000047053 ENSMUST00000050660 Teddm1a protein_coding Interval_152519 chr7 133775953 133777297 + 0 NA promoter-TSS (ENSMUSG00000053111.13) protein_coding-promoter-TSS (ENSMUSG00000053111.13) -9 ENSMUSG00000030986.13 ENSMUSG00000030986 ENSMUST00000135989 Dhx32 protein_coding Interval_97676 chr2 142638042 142639135 + 0 NA intron (ENSMUSG00000038844.10, intron 26 of 26) protein_coding-intron (ENSMUSG00000038844.10, intron 25 of 25) 61660 ENSMUSG00000083215.3 ENSMUSG00000083215 ENSMUST00000119377 Rbmx2-ps processed_pseudogene Interval_85297 chr19 24486618 24486844 + 0 NA intron (ENSMUSG00000024867.14, intron 1 of 3) protein_coding-intron (ENSMUSG00000024867.14, intron 1 of 14) -9375 ENSMUSG00000074922.1 ENSMUSG00000074922 ENSMUST00000099556 Fam122a protein_coding Interval_15325 chr10 44506325 44507236 + 0 NA intron (ENSMUSG00000038151.13, intron 1 of 3) protein_coding-intron (ENSMUSG00000038151.13, intron 1 of 3) -49570 ENSMUSG00000038151.13 ENSMUSG00000038151 ENSMUST00000167340 Prdm1 protein_coding Interval_36113 chr12 35981744 35982140 + 0 NA Intergenic Intergenic -10965 ENSMUSG00000020581.11 ENSMUSG00000020581 ENSMUST00000020898 Agr2 protein_coding Interval_91231 chr2 36179443 36180484 + 0 NA intron (ENSMUSG00000026887.9, intron 6 of 6) protein_coding-intron (ENSMUSG00000026887.9, intron 6 of 6) -22859 ENSMUSG00000085141.1 ENSMUSG00000085141 ENSMUST00000128242 Gm13429 processed_transcript Interval_157450 chr8 70448431 70449093 + 0 NA Intergenic Intergenic -17477 ENSMUSG00000003575.13 ENSMUSG00000003575 ENSMUST00000153632 Crtc1 protein_coding Interval_86517 chr19 41330557 41331120 + 0 NA intron (ENSMUSG00000025017.10, intron 3 of 8) protein_coding-intron (ENSMUSG00000025017.10, intron 3 of 16) 54264 ENSMUSG00000025017.10 ENSMUSG00000025017 ENSMUST00000235978 Pik3ap1 protein_coding Interval_166968 chr9 64219713 64220996 + 0 NA intron (ENSMUSG00000004936.8, intron 1 of 10) protein_coding-intron (ENSMUSG00000004936.8, intron 1 of 10) -5169 ENSMUSG00000093239.1 ENSMUSG00000093239 ENSMUST00000175498 Gm24106 miRNA Interval_135488 chr6 39591357 39593243 + 0 NA promoter-TSS (ENSMUSG00000002416.13) protein_coding-promoter-TSS (ENSMUSG00000002416.13) -288 ENSMUSG00000002416.13 ENSMUSG00000002416 ENSMUST00000135239 Ndufb2 protein_coding Interval_103178 chr3 36377852 36378076 + 0 NA Intergenic Intergenic 17233 ENSMUSG00000105281.1 ENSMUSG00000105281 ENSMUST00000196870 Gm17835 processed_pseudogene Interval_58058 chr15 27514929 27515190 + 0 NA intron (ENSMUSG00000022265.7, intron 1 of 11) protein_coding-intron (ENSMUSG00000022265.7, intron 1 of 11) 11147 ENSMUSG00000115543.1 ENSMUSG00000115543 ENSMUST00000227224 B230362B09Rik TEC Interval_90075 chr2 27744799 27746531 + 0 NA intron (ENSMUSG00000015846.15, intron 4 of 9) protein_coding-intron (ENSMUSG00000015846.15, intron 4 of 9) 20446 ENSMUSG00000015846.15 ENSMUSG00000015846 ENSMUST00000148756 Rxra protein_coding Interval_160565 chr8 110742107 110742740 + 0 NA exon (ENSMUSG00000031750.15, exon 7 of 7) protein_coding-exon (ENSMUSG00000031750.15, exon 7 of 7) 275 ENSMUSG00000031750.15 ENSMUSG00000031750 ENSMUST00000137362 Il34 protein_coding Interval_141390 chr6 127920355 127921092 + 0 NA intron (ENSMUSG00000030351.5, intron 2 of 2) protein_coding-intron (ENSMUSG00000030351.5, intron 2 of 7) 24116 ENSMUSG00000085813.1 ENSMUSG00000085813 ENSMUST00000132657 Gm15870 antisense Interval_21924 chr11 5239703 5240571 + 0 NA intron (ENSMUSG00000020393.16, intron 2 of 8) protein_coding-intron (ENSMUSG00000020393.16, intron 2 of 8) -1689 ENSMUSG00000020393.16 ENSMUSG00000020393 ENSMUST00000151978 Kremen1 protein_coding Interval_89901 chr2 26332131 26332945 + 0 NA intron (ENSMUSG00000026930.15, intron 1 of 2) protein_coding-intron (ENSMUSG00000026930.15, intron 9 of 13) 6504 ENSMUSG00000026930.15 ENSMUSG00000026930 ENSMUST00000142057 Gpsm1 protein_coding Interval_156478 chr8 48554860 48556190 + 0 NA promoter-TSS (ENSMUSG00000031561.16) protein_coding-promoter-TSS (ENSMUSG00000031561.16) -212 ENSMUSG00000031561.16 ENSMUSG00000031561 ENSMUST00000211812 Tenm3 protein_coding Interval_59722 chr15 58909060 58909277 + 0 NA exon (ENSMUSG00000050891.10, exon 9 of 9) protein_coding-exon (ENSMUSG00000050891.10, exon 9 of 9) 7010 ENSMUSG00000050891.10 ENSMUSG00000050891 ENSMUST00000228230 Tatdn1 protein_coding Interval_108045 chr3 121020896 121021660 + 0 NA promoter-TSS (ENSMUSG00000105243.1) TEC-promoter-TSS (ENSMUSG00000105243.1) -502 ENSMUSG00000105243.1 ENSMUSG00000105243 ENSMUST00000198123 Gm43444 TEC Interval_128729 chr5 114955092 114956228 + 0 NA intron (ENSMUSG00000029556.12, intron 2 of 8) protein_coding-intron (ENSMUSG00000029556.12, intron 3 of 9) -13163 ENSMUSG00000086140.1 ENSMUSG00000086140 ENSMUST00000138108 Hnf1aos2 antisense Interval_119814 chr4 140159455 140160774 + 0 NA intron (ENSMUSG00000040972.8, intron 1 of 9) protein_coding-intron (ENSMUSG00000040972.8, intron 1 of 9) 17241 ENSMUSG00000086164.1 ENSMUSG00000086164 ENSMUST00000137283 Gm13029 antisense Interval_70695 chr17 13569250 13569423 + 0 NA promoter-TSS (ENSMUSG00000117042.1) lincRNA-promoter-TSS (ENSMUSG00000117042.1) -35167 ENSMUSG00000095184.1 ENSMUSG00000095184 ENSMUST00000101829 Gm26375 snRNA Interval_40476 chr12 105087010 105088118 + 0 NA Intergenic Intergenic -47632 ENSMUSG00000113051.1 ENSMUSG00000113051 ENSMUST00000222354 Gm47672 processed_pseudogene Interval_41400 chr12 113343891 113344629 + 0 NA Intergenic Intergenic -13737 ENSMUSG00000076614.7 ENSMUSG00000076614 ENSMUST00000103420 Ighg1 IG_C_gene Interval_69074 chr16 90435132 90435400 + 0 NA intron (ENSMUSG00000053414.8, intron 2 of 10) protein_coding-intron (ENSMUSG00000053414.8, intron 2 of 10) 34722 ENSMUSG00000053414.8 ENSMUSG00000053414 ENSMUST00000231603 Hunk protein_coding Interval_6107 chr1 97039083 97039361 + 0 NA Intergenic Intergenic -13657 ENSMUSG00000100454.1 ENSMUSG00000100454 ENSMUST00000188810 Gm28901 lincRNA Interval_139513 chr6 100652166 100653248 + 0 NA intron (ENSMUSG00000035378.17, intron 5 of 10) protein_coding-intron (ENSMUSG00000035378.17, intron 5 of 7) 9756 ENSMUSG00000108122.1 ENSMUSG00000108122 ENSMUST00000204269 Gm44116 TEC Interval_139701 chr6 107475395 107475616 + 0 NA Intergenic Intergenic -26561 ENSMUSG00000098494.1 ENSMUSG00000098494 ENSMUST00000184596 Gm27690 miRNA Interval_51471 chr14 27862043 27862816 + 0 NA intron (ENSMUSG00000040640.11, intron 2 of 4) protein_coding-intron (ENSMUSG00000040640.11, intron 3 of 15) 13788 ENSMUSG00000109849.1 ENSMUSG00000109849 ENSMUST00000211470 Gm45645 antisense Interval_93581 chr2 74654916 74656539 + 0 NA exon (ENSMUSG00000001815.15, exon 3 of 3) protein_coding-exon (ENSMUSG00000001815.15, exon 3 of 3) 3692 ENSMUSG00000001815.15 ENSMUSG00000001815 ENSMUST00000173623 Evx2 protein_coding Interval_130097 chr5 124243001 124243487 + 0 NA intron (ENSMUSG00000029406.15, intron 1 of 24) protein_coding-intron (ENSMUSG00000029406.15, intron 1 of 25) 5520 ENSMUSG00000105759.1 ENSMUSG00000105759 ENSMUST00000197756 Gm42425 antisense Interval_159421 chr8 94518049 94518502 + 0 NA intron (ENSMUSG00000074151.13, intron 40 of 52) protein_coding-intron (ENSMUSG00000074151.13, intron 36 of 48) 13229 ENSMUSG00000098511.1 ENSMUSG00000098511 ENSMUST00000184542 Mir7072 miRNA Interval_123004 chr5 28358453 28358725 + 0 NA intron (ENSMUSG00000048271.14, intron 7 of 17) protein_coding-intron (ENSMUSG00000048271.14, intron 8 of 18) -35466 ENSMUSG00000048271.14 ENSMUSG00000048271 ENSMUST00000133313 Rbm33 protein_coding Interval_169520 chr9 98805460 98806027 + 0 NA intron (ENSMUSG00000102013.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000102013.1, intron 1 of 2) 14344 ENSMUSG00000102013.1 ENSMUSG00000102013 ENSMUST00000186387 E330023G01Rik lincRNA Interval_39797 chr12 98521650 98522535 + 0 NA intron (ENSMUSG00000033854.10, intron 1 of 6) protein_coding-intron (ENSMUSG00000033854.10, intron 1 of 6) -1752 ENSMUSG00000113613.1 ENSMUSG00000113613 ENSMUST00000220507 Gm40893 antisense Interval_139511 chr6 100645208 100646343 + 0 NA intron (ENSMUSG00000035378.17, intron 6 of 10) protein_coding-intron (ENSMUSG00000035378.17, intron 6 of 7) 16688 ENSMUSG00000108122.1 ENSMUSG00000108122 ENSMUST00000204269 Gm44116 TEC Interval_98431 chr2 152313233 152313455 + 0 NA exon (ENSMUSG00000027465.13, exon 8 of 8) protein_coding-exon (ENSMUSG00000027465.13, exon 8 of 8) 10154 ENSMUSG00000027466.15 ENSMUSG00000027466 ENSMUST00000129590 Rbck1 protein_coding Interval_34438 chr12 4166630 4167554 + 0 NA intron (ENSMUSG00000020654.15, intron 1 of 2) protein_coding-intron (ENSMUSG00000020654.15, intron 1 of 20) 33989 ENSMUSG00000020654.15 ENSMUSG00000020654 ENSMUST00000127110 Adcy3 protein_coding Interval_165764 chr9 52285519 52285950 + 0 NA Intergenic Intergenic -5465 ENSMUSG00000077796.1 ENSMUSG00000077796 ENSMUST00000104608 Gm25562 snoRNA Interval_77952 chr18 6055366 6056108 + 0 NA intron (ENSMUSG00000041225.16, intron 1 of 2) protein_coding-intron (ENSMUSG00000041225.16, intron 8 of 18) -40716 ENSMUSG00000117548.1 ENSMUSG00000117548 ENSMUST00000234469 Gm41662 TEC Interval_70147 chr17 5807992 5808205 + 0 NA Intergenic Intergenic 8542 ENSMUSG00000068120.4 ENSMUSG00000068120 ENSMUST00000181584 Gm10231 processed_pseudogene Interval_65697 chr16 25532821 25533160 + 0 NA Intergenic Intergenic -89717 ENSMUSG00000116828.1 ENSMUSG00000116828 ENSMUST00000232460 Gm18896 processed_pseudogene Interval_114612 chr4 83218776 83220144 + 0 NA TTS (ENSMUSG00000038172.14) protein_coding-TTS (ENSMUSG00000038172.14) 25472 ENSMUSG00000083245.1 ENSMUSG00000083245 ENSMUST00000117732 Gm11185 processed_pseudogene Interval_138028 chr6 84392476 84393153 + 0 NA Intergenic Intergenic 31024 ENSMUSG00000107797.1 ENSMUSG00000107797 ENSMUST00000203521 Gm10445 lincRNA Interval_91746 chr2 49102661 49102986 + 0 NA intron (ENSMUSG00000036792.12, intron 4 of 4) protein_coding-intron (ENSMUSG00000036792.12, intron 4 of 10) -82195 ENSMUSG00000080937.1 ENSMUSG00000080937 ENSMUST00000118659 Gm13510 processed_pseudogene Interval_135344 chr6 38523754 38524959 + 0 NA exon (ENSMUSG00000038538.17, exon 2 of 2) protein_coding-exon (ENSMUSG00000038538.17, exon 2 of 2) -9146 ENSMUSG00000019689.4 ENSMUSG00000019689 ENSMUST00000019833 Fmc1 protein_coding Interval_69826 chr16 97169884 97171075 + 0 NA exon (ENSMUSG00000050272.10, exon 1 of 33) protein_coding-exon (ENSMUSG00000050272.10, exon 1 of 33) -234790 ENSMUSG00000116686.1 ENSMUSG00000116686 ENSMUST00000232315 Gm49681 processed_pseudogene Interval_6192 chr1 100854637 100855348 + 0 NA Intergenic Intergenic -6801 ENSMUSG00000077039.1 ENSMUSG00000077039 ENSMUST00000103851 Gm25537 miRNA Interval_108369 chr3 126087094 126087427 + 0 NA Intergenic Intergenic 65463 ENSMUSG00000087726.1 ENSMUSG00000087726 ENSMUST00000157101 Gm26275 misc_RNA Interval_116529 chr4 115056262 115057807 + 0 NA promoter-TSS (ENSMUSG00000028717.12) protein_coding-promoter-TSS (ENSMUSG00000028717.12) -2474 ENSMUSG00000028717.12 ENSMUSG00000028717 ENSMUST00000162489 Tal1 protein_coding Interval_91293 chr2 37483328 37483513 + 0 NA exon (ENSMUSG00000026915.16, exon 19 of 19) protein_coding-exon (ENSMUSG00000026915.16, exon 19 of 19) -5255 ENSMUSG00000107491.1 ENSMUSG00000107491 ENSMUST00000203017 Gm17893 processed_pseudogene Interval_74087 chr17 46519807 46522220 + 0 NA promoter-TSS (ENSMUSG00000040327.16) protein_coding-promoter-TSS (ENSMUSG00000040327.16) -19942 ENSMUSG00000040327.16 ENSMUSG00000040327 ENSMUST00000183163 Cul9 protein_coding Interval_167827 chr9 72908526 72909283 + 0 NA intron (ENSMUSG00000036030.9, intron 18 of 19) protein_coding-intron (ENSMUSG00000036030.9, intron 18 of 19) -1723 ENSMUSG00000036030.9 ENSMUSG00000036030 ENSMUST00000184274 Prtg protein_coding Interval_132756 chr5 147651366 147651875 + 0 NA intron (ENSMUSG00000029648.13, intron 11 of 12) protein_coding-intron (ENSMUSG00000029648.13, intron 11 of 29) -4813 ENSMUSG00000029648.13 ENSMUSG00000029648 ENSMUST00000031652 Flt1 protein_coding Interval_6973 chr1 121472267 121472842 + 0 NA intron (ENSMUSG00000026339.18, intron 11 of 23) protein_coding-intron (ENSMUSG00000026339.18, intron 11 of 23) 20649 ENSMUSG00000085857.1 ENSMUSG00000085857 ENSMUST00000152863 Gm15392 antisense Interval_73520 chr17 38890500 38891393 + 0 NA Intergenic Intergenic -1366 ENSMUSG00000117330.1 ENSMUSG00000117330 ENSMUST00000232682 Gm49824 processed_pseudogene Interval_157167 chr8 66814708 66814982 + 0 NA Intergenic Intergenic -30952 ENSMUSG00000110533.1 ENSMUSG00000110533 ENSMUST00000212284 LOC665443 processed_pseudogene Interval_65821 chr16 29474098 29474365 + 0 NA intron (ENSMUSG00000038094.15, intron 5 of 29) protein_coding-intron (ENSMUSG00000038094.15, intron 6 of 21) -28259 ENSMUSG00000118569.1 ENSMUSG00000118569 ENSMUST00000239142 AC175464.1 unprocessed_pseudogene Interval_31460 chr11 100806053 100807135 + 0 NA intron (ENSMUSG00000020919.11, intron 2 of 18) protein_coding-intron (ENSMUSG00000020919.11, intron 2 of 18) -31794 ENSMUSG00000089049.1 ENSMUSG00000089049 ENSMUST00000158424 Gm24358 misc_RNA Interval_33637 chr11 117674453 117675108 + 0 NA intron (ENSMUSG00000025571.13, intron 1 of 21) protein_coding-intron (ENSMUSG00000025571.13, intron 1 of 21) 63533 ENSMUSG00000054418.6 ENSMUSG00000054418 ENSMUST00000155384 2900041M22Rik processed_transcript Interval_145205 chr7 30633550 30635346 + 0 NA intron (ENSMUSG00000006311.8, intron 4 of 5) protein_coding-intron (ENSMUSG00000006311.8, intron 4 of 5) 1404 ENSMUSG00000006311.8 ENSMUSG00000006311 ENSMUST00000108147 Etv2 protein_coding Interval_60324 chr15 72885177 72886347 + 0 NA intron (ENSMUSG00000047921.17, intron 16 of 16) protein_coding-intron (ENSMUSG00000047921.17, intron 16 of 21) -27595 ENSMUSG00000096173.2 ENSMUSG00000096173 ENSMUST00000166418 Gm3150 processed_pseudogene Interval_119523 chr4 138126260 138126620 + 0 NA exon (ENSMUSG00000028760.16, exon 12 of 35) protein_coding-exon (ENSMUSG00000028760.16, exon 12 of 35) 12078 ENSMUSG00000084804.1 ENSMUSG00000084804 ENSMUST00000124620 1700095J12Rik antisense Interval_45565 chr13 55917287 55917507 + 0 NA intron (ENSMUSG00000114493.2, intron 2 of 5) antisense-intron (ENSMUSG00000114493.2, intron 2 of 5) -81205 ENSMUSG00000021506.7 ENSMUSG00000021506 ENSMUST00000173618 Pitx1 protein_coding Interval_108887 chr3 132996485 132996787 + 0 NA intron (ENSMUSG00000028018.15, intron 3 of 3) protein_coding-intron (ENSMUSG00000028018.15, intron 9 of 11) -32787 ENSMUSG00000104787.1 ENSMUSG00000104787 ENSMUST00000197045 Gm19148 processed_pseudogene Interval_120019 chr4 141394382 141395235 + 0 NA promoter-TSS (ENSMUSG00000033770.13) protein_coding-promoter-TSS (ENSMUSG00000033770.13) 19 ENSMUSG00000033770.13 ENSMUSG00000033770 ENSMUST00000133676 Clcnka protein_coding Interval_129742 chr5 122071100 122072684 + 0 NA Intergenic Intergenic 23510 ENSMUSG00000087386.1 ENSMUSG00000087386 ENSMUST00000135544 Gm15637 antisense Interval_18255 chr10 84346855 84347808 + 0 NA Intergenic Intergenic 38445 ENSMUSG00000111875.1 ENSMUSG00000111875 ENSMUST00000214125 Gm5425 processed_pseudogene Interval_92715 chr2 63781750 63782094 + 0 NA Intergenic Intergenic 316088 ENSMUSG00000075324.13 ENSMUSG00000075324 ENSMUST00000153538 Fign protein_coding Interval_58689 chr15 37061137 37061920 + 0 NA Intergenic Intergenic 53945 ENSMUSG00000097259.2 ENSMUSG00000097259 ENSMUST00000227544 Gm26766 antisense Interval_103196 chr3 36563579 36564469 + 0 NA TTS (ENSMUSG00000027715.9) protein_coding-TTS (ENSMUSG00000027715.9) 7527 ENSMUSG00000027715.9 ENSMUSG00000027715 ENSMUST00000145309 Ccna2 protein_coding Interval_45716 chr13 57246857 57247174 + 0 NA Intergenic Intergenic 7168 ENSMUSG00000114363.1 ENSMUSG00000114363 ENSMUST00000225562 Gm48174 processed_pseudogene Interval_172463 chrX 20775342 20775876 + 0 NA Intergenic Intergenic -3207 ENSMUSG00000118509.1 ENSMUSG00000118509 ENSMUST00000238979 AL671885.1 unprocessed_pseudogene Interval_169068 chr9 91409600 91410765 + 0 NA intron (ENSMUSG00000100341.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000100341.1, intron 1 of 2) 5708 ENSMUSG00000100341.1 ENSMUSG00000100341 ENSMUST00000191272 Gm29478 lincRNA Interval_35863 chr12 31302015 31302510 + 0 NA intron (ENSMUSG00000002900.17, intron 17 of 32) protein_coding-intron (ENSMUSG00000002900.17, intron 17 of 32) 36968 ENSMUSG00000002900.17 ENSMUSG00000002900 ENSMUST00000172134 Lamb1 protein_coding Interval_34257 chr11 121685893 121686552 + 0 NA Intergenic Intergenic -13069 ENSMUSG00000046605.14 ENSMUSG00000046605 ENSMUST00000062654 B3gntl1 protein_coding Interval_65078 chr16 18895567 18896150 + 0 NA intron (ENSMUSG00000099908.1, intron 3 of 23) protein_coding-intron (ENSMUSG00000022702.16, intron 2 of 24) -19249 ENSMUSG00000022706.16 ENSMUSG00000022706 ENSMUST00000232123 Mrpl40 protein_coding Interval_146681 chr7 49375179 49375625 + 0 NA intron (ENSMUSG00000052512.17, intron 3 of 4) protein_coding-intron (ENSMUSG00000052512.17, intron 2 of 5) 29308 ENSMUSG00000109051.1 ENSMUSG00000109051 ENSMUST00000208060 Gm44913 TEC Interval_156937 chr8 61964126 61965495 + 0 NA intron (ENSMUSG00000037921.15, intron 14 of 38) protein_coding-intron (ENSMUSG00000037921.15, intron 13 of 37) 36721 ENSMUSG00000037921.15 ENSMUSG00000037921 ENSMUST00000136121 Ddx60 protein_coding Interval_82424 chr18 73905185 73905596 + 0 NA Intergenic Intergenic 46003 ENSMUSG00000064036.15 ENSMUSG00000064036 ENSMUST00000134847 Mro protein_coding Interval_59990 chr15 63299074 63299408 + 0 NA intron (ENSMUSG00000115520.2, intron 6 of 8) lincRNA-intron (ENSMUSG00000115520.2, intron 6 of 8) 43337 ENSMUSG00000115369.1 ENSMUSG00000115369 ENSMUST00000226449 Gm49014 lincRNA Interval_10480 chr1 171241677 171241998 + 0 NA intron (ENSMUSG00000013593.12, intron 1 of 3) protein_coding-intron (ENSMUSG00000013593.12, intron 2 of 12) -7530 ENSMUSG00000058715.11 ENSMUSG00000058715 ENSMUST00000150997 Fcer1g protein_coding Interval_48998 chr13 106811011 106811392 + 0 NA TTS (ENSMUSG00000042590.17) protein_coding-TTS (ENSMUSG00000042590.17) 23131 ENSMUSG00000101308.1 ENSMUSG00000101308 ENSMUST00000187867 Gm28989 antisense Interval_50227 chr14 10608564 10609172 + 0 NA intron (ENSMUSG00000060579.13, intron 3 of 4) protein_coding-intron (ENSMUSG00000060579.13, intron 4 of 9) -129667 ENSMUSG00000089833.2 ENSMUSG00000089833 ENSMUST00000160149 Fhitos antisense Interval_65986 chr16 30733422 30733777 + 0 NA Intergenic Intergenic 59656 ENSMUSG00000116570.1 ENSMUSG00000116570 ENSMUST00000231445 Gm49754 lincRNA Interval_3898 chr1 64577620 64579393 + 0 NA TTS (ENSMUSG00000025958.14) protein_coding-TTS (ENSMUSG00000025958.14) 2118 ENSMUSG00000025958.14 ENSMUSG00000025958 ENSMUST00000190979 Creb1 protein_coding Interval_129071 chr5 117240488 117241269 + 0 NA exon (ENSMUSG00000061288.13, exon 1 of 8) protein_coding-exon (ENSMUSG00000061288.13, exon 1 of 8) 44323 ENSMUSG00000084587.1 ENSMUSG00000084587 ENSMUST00000122638 n-R5s174 rRNA Interval_147163 chr7 63973675 63974679 + 0 NA Intergenic Intergenic 11937 ENSMUSG00000108313.1 ENSMUSG00000108313 ENSMUST00000206457 Gm45052 lincRNA Interval_125562 chr5 71332718 71333060 + 0 NA Intergenic Intergenic 215316 ENSMUSG00000049387.10 ENSMUSG00000049387 ENSMUST00000050129 Cox7b2 protein_coding Interval_38361 chr12 77787291 77787500 + 0 NA Intergenic Intergenic 27414 ENSMUSG00000077707.1 ENSMUSG00000077707 ENSMUST00000104519 Gm24070 snoRNA Interval_125870 chr5 75164834 75165448 + 0 NA intron (ENSMUSG00000029231.15, intron 3 of 3) protein_coding-intron (ENSMUSG00000029231.15, intron 3 of 22) 8308 ENSMUSG00000029231.15 ENSMUSG00000029231 ENSMUST00000200822 Pdgfra protein_coding Interval_70693 chr17 13564976 13565229 + 0 NA intron (ENSMUSG00000117063.1, intron 1 of 4) lincRNA-intron (ENSMUSG00000117063.1, intron 1 of 4) -30933 ENSMUSG00000095184.1 ENSMUSG00000095184 ENSMUST00000101829 Gm26375 snRNA Interval_123116 chr5 29786861 29789545 + 0 NA intron (ENSMUSG00000029131.14, intron 8 of 8) protein_coding-intron (ENSMUSG00000029131.14, intron 8 of 8) 6834 ENSMUSG00000106558.1 ENSMUSG00000106558 ENSMUST00000197149 Gm5552 processed_pseudogene Interval_128605 chr5 114271090 114271631 + 0 NA intron (ENSMUSG00000042002.11, intron 2 of 2) protein_coding-intron (ENSMUSG00000042002.11, intron 2 of 9) 2389 ENSMUSG00000042002.11 ENSMUSG00000042002 ENSMUST00000147953 Foxn4 protein_coding Interval_17276 chr10 75531552 75532124 + 0 NA intron (ENSMUSG00000020180.10, intron 2 of 3) protein_coding-intron (ENSMUSG00000020180.10, intron 2 of 3) 13795 ENSMUSG00000020180.10 ENSMUSG00000020180 ENSMUST00000220229 Snrpd3 protein_coding Interval_80746 chr18 46779415 46779695 + 0 NA TTS (ENSMUSG00000024480.9) protein_coding-TTS (ENSMUSG00000024480.9) 8230 ENSMUSG00000117372.1 ENSMUSG00000117372 ENSMUST00000234567 Gm49972 TEC Interval_126863 chr5 96042493 96043193 + 0 NA Intergenic Intergenic 68603 ENSMUSG00000107092.1 ENSMUSG00000107092 ENSMUST00000200970 Gm7993 processed_pseudogene Interval_171088 chr9 114483683 114485417 + 0 NA Intergenic Intergenic 20366 ENSMUSG00000047898.7 ENSMUSG00000047898 ENSMUST00000215959 Ccr4 protein_coding Interval_113420 chr4 54838480 54839037 + 0 NA Intergenic Intergenic -14370 ENSMUSG00000082111.1 ENSMUSG00000082111 ENSMUST00000120731 Gm12479 processed_pseudogene Interval_75001 chr17 59567467 59568584 + 0 NA Intergenic Intergenic 1640 ENSMUSG00000077562.1 ENSMUSG00000077562 ENSMUST00000104374 Gm23203 snRNA Interval_37859 chr12 72649077 72650399 + 0 NA promoter-TSS (ENSMUSG00000109482.2) protein_coding-promoter-TSS (ENSMUSG00000109482.2) 15016 ENSMUSG00000021094.10 ENSMUSG00000021094 ENSMUST00000221674 Dhrs7 protein_coding Interval_6858 chr1 120138935 120139365 + 0 NA intron (ENSMUSG00000026388.15, intron 1 of 4) protein_coding-intron (ENSMUSG00000026388.15, intron 1 of 4) -11449 ENSMUSG00000026388.15 ENSMUSG00000026388 ENSMUST00000128578 3110009E18Rik protein_coding Interval_173980 chrX 121479505 121479904 + 0 NA Intergenic Intergenic 63561 ENSMUSG00000083699.1 ENSMUSG00000083699 ENSMUST00000117112 Gm14932 processed_pseudogene Interval_123040 chr5 29085973 29086531 + 0 NA Intergenic Intergenic -110335 ENSMUSG00000029130.12 ENSMUSG00000029130 ENSMUST00000163050 Rnf32 protein_coding Interval_162457 chr8 128968994 128969221 + 0 NA intron (ENSMUSG00000025808.17, intron 16 of 55) protein_coding-intron (ENSMUSG00000025808.17, intron 16 of 55) -48783 ENSMUSG00000077538.1 ENSMUSG00000077538 ENSMUST00000104350 Gm22545 snoRNA Interval_34032 chr11 120120064 120121106 + 0 NA intron (ENSMUSG00000061306.16, intron 10 of 10) protein_coding-intron (ENSMUSG00000061306.16, intron 10 of 15) 21486 ENSMUSG00000078572.3 ENSMUSG00000078572 ENSMUST00000186913 Ndufaf8 protein_coding Interval_103577 chr3 50217801 50217991 + 0 NA intron (ENSMUSG00000027737.10, intron 11 of 11) protein_coding-intron (ENSMUSG00000027737.10, intron 11 of 11) -36959 ENSMUSG00000102167.1 ENSMUSG00000102167 ENSMUST00000193451 Gm2345 processed_pseudogene Interval_84843 chr19 17401712 17401949 + 0 NA TTS (ENSMUSG00000024712.9) protein_coding-TTS (ENSMUSG00000024712.9) 4393 ENSMUSG00000024712.9 ENSMUSG00000024712 ENSMUST00000146171 Rfk protein_coding Interval_145215 chr7 30716946 30718005 + 0 NA promoter-TSS (ENSMUSG00000005553.14) protein_coding-promoter-TSS (ENSMUSG00000005553.14) -357 ENSMUSG00000005553.14 ENSMUSG00000005553 ENSMUST00000165410 Atp4a protein_coding Interval_88110 chr19 59208261 59209132 + 0 NA Intergenic Intergenic -10518 ENSMUSG00000040901.8 ENSMUSG00000040901 ENSMUST00000065204 Kcnk18 protein_coding Interval_18290 chr10 84621672 84622906 + 0 NA promoter-TSS (ENSMUSG00000034453.8) protein_coding-promoter-TSS (ENSMUSG00000034453.8) 289 ENSMUSG00000097309.2 ENSMUSG00000097309 ENSMUST00000181277 Gm17249 bidirectional_promoter_lncRNA Interval_45000 chr13 51363629 51364056 + 0 NA Intergenic Intergenic 18846 ENSMUSG00000113162.1 ENSMUSG00000113162 ENSMUST00000222986 Gm47554 processed_pseudogene Interval_90103 chr2 28077816 28078446 + 0 NA TTS (ENSMUSG00000026835.15) protein_coding-TTS (ENSMUSG00000026835.15) 6754 ENSMUSG00000026835.15 ENSMUSG00000026835 ENSMUST00000135472 Fcnb protein_coding Interval_78634 chr18 15980409 15982040 + 0 NA Intergenic Intergenic -7144 ENSMUSG00000043223.7 ENSMUSG00000043223 ENSMUST00000155839 Gm4835 processed_pseudogene Interval_107147 chr3 103913866 103915290 + 0 NA promoter-TSS (ENSMUSG00000044098.14) protein_coding-promoter-TSS (ENSMUSG00000044098.14) -11615 ENSMUSG00000083630.2 ENSMUSG00000083630 ENSMUST00000116162 Gm15602 processed_pseudogene Interval_7407 chr1 131107130 131107691 + 0 NA Intergenic Intergenic -4665 ENSMUSG00000089256.1 ENSMUSG00000089256 ENSMUST00000158631 Gm25717 misc_RNA Interval_92407 chr2 59584755 59585091 + 0 NA Intergenic Intergenic -20239 ENSMUSG00000081157.1 ENSMUSG00000081157 ENSMUST00000118837 Gm13552 processed_pseudogene Interval_25512 chr11 49392780 49393183 + 0 NA Intergenic Intergenic -11639 ENSMUSG00000084278.1 ENSMUSG00000084278 ENSMUST00000119779 Gm12189 processed_pseudogene Interval_118241 chr4 129750122 129751204 + 0 NA Intergenic Intergenic 11253 ENSMUSG00000080944.1 ENSMUSG00000080944 ENSMUST00000122147 Gm12967 processed_pseudogene Interval_97201 chr2 132210657 132211048 + 0 NA intron (ENSMUSG00000086756.1, intron 2 of 2) antisense-intron (ENSMUSG00000086756.1, intron 2 of 2) 36936 ENSMUSG00000027341.10 ENSMUSG00000027341 ENSMUST00000141813 Tmem230 protein_coding Interval_125197 chr5 65278246 65278987 + 0 NA intron (ENSMUSG00000029191.16, intron 14 of 24) protein_coding-intron (ENSMUSG00000029191.16, intron 14 of 24) -4949 ENSMUSG00000029191.16 ENSMUSG00000029191 ENSMUST00000203644 Rfc1 protein_coding Interval_126059 chr5 77155055 77156441 + 0 NA Intergenic Intergenic -15496 ENSMUSG00000106783.1 ENSMUSG00000106783 ENSMUST00000201649 Chaer1 lincRNA Interval_35101 chr12 17323657 17325342 + 0 NA intron (ENSMUSG00000020566.19, intron 2 of 6) protein_coding-intron (ENSMUSG00000020566.19, intron 1 of 14) 214 ENSMUSG00000020566.19 ENSMUSG00000020566 ENSMUST00000143131 Atp6v1c2 protein_coding Interval_167898 chr9 73819091 73819261 + 0 NA intron (ENSMUSG00000062151.13, intron 2 of 32) protein_coding-intron (ENSMUSG00000062151.13, intron 1 of 31) -23919 ENSMUSG00000084426.1 ENSMUSG00000084426 ENSMUST00000122477 Gm25105 snoRNA Interval_103305 chr3 38396661 38397724 + 0 NA Intergenic Intergenic 22959 ENSMUSG00000106485.1 ENSMUSG00000106485 ENSMUST00000200199 3830422I06Rik TEC Interval_82070 chr18 67506130 67507485 + 0 NA intron (ENSMUSG00000024533.17, intron 6 of 13) protein_coding-intron (ENSMUSG00000024533.17, intron 6 of 14) -9078 ENSMUSG00000024533.17 ENSMUSG00000024533 ENSMUST00000226000 Spire1 protein_coding Interval_162859 chr9 10485931 10486195 + 0 NA intron (ENSMUSG00000039488.15, intron 2 of 20) protein_coding-intron (ENSMUSG00000039488.15, intron 2 of 24) 10128 ENSMUSG00000111648.1 ENSMUSG00000111648 ENSMUST00000217614 Gm46103 processed_pseudogene Interval_77058 chr17 86126102 86126367 + 0 NA exon (ENSMUSG00000024135.10, exon 7 of 21) protein_coding-exon (ENSMUSG00000024135.10, exon 7 of 21) -49341 ENSMUSG00000117546.1 ENSMUSG00000117546 ENSMUST00000234087 AC154542.1 TEC Interval_85554 chr19 28480686 28481507 + 0 NA intron (ENSMUSG00000052942.13, intron 4 of 10) protein_coding-intron (ENSMUSG00000052942.13, intron 3 of 9) 102198 ENSMUSG00000089952.1 ENSMUSG00000089952 ENSMUST00000162380 4933413C19Rik sense_intronic Interval_144477 chr7 25363148 25363832 + 0 NA exon (ENSMUSG00000045039.9, exon 41 of 41) protein_coding-exon (ENSMUSG00000045039.9, exon 41 of 41) 6213 ENSMUSG00000063651.11 ENSMUSG00000063651 ENSMUST00000076276 Cnfn protein_coding Interval_22495 chr11 11113668 11116647 + 0 NA promoter-TSS (ENSMUSG00000050830.17) protein_coding-promoter-TSS (ENSMUSG00000050830.17) -1328 ENSMUSG00000050830.17 ENSMUSG00000050830 ENSMUST00000154155 Vwc2 protein_coding Interval_173071 chrX 70385138 70386307 + 0 NA promoter-TSS (ENSMUSG00000045237.5) protein_coding-promoter-TSS (ENSMUSG00000045237.5) -155 ENSMUSG00000045237.5 ENSMUSG00000045237 ENSMUST00000053981 1110012L19Rik protein_coding Interval_87493 chr19 53028741 53030098 + 0 NA intron (ENSMUSG00000025027.18, intron 1 of 19) protein_coding-intron (ENSMUSG00000025027.18, intron 3 of 6) -18663 ENSMUSG00000098730.1 ENSMUSG00000098730 ENSMUST00000184510 Mir6407 miRNA Interval_86371 chr19 39156574 39157631 + 0 NA intron (ENSMUSG00000067229.3, intron 2 of 7) protein_coding-intron (ENSMUSG00000067229.3, intron 3 of 8) 43192 ENSMUSG00000067229.3 ENSMUSG00000067229 ENSMUST00000146494 Cyp2c66 protein_coding Interval_70973 chr17 16944563 16946115 + 0 NA Intergenic Intergenic -6213 ENSMUSG00000060149.7 ENSMUSG00000060149 ENSMUST00000071374 BC002059 lincRNA Interval_112333 chr4 40635470 40635943 + 0 NA Intergenic Intergenic -42626 ENSMUSG00000081720.1 ENSMUSG00000081720 ENSMUST00000117626 Gm12391 processed_pseudogene Interval_150075 chr7 105632513 105634268 + 0 NA promoter-TSS (ENSMUSG00000036989.16) protein_coding-promoter-TSS (ENSMUSG00000036989.16) 6936 ENSMUSG00000030881.15 ENSMUSG00000030881 ENSMUST00000127759 Arfip2 protein_coding Interval_136423 chr6 54333531 54333726 + 0 NA intron (ENSMUSG00000073067.10, intron 3 of 13) processed_transcript-intron (ENSMUSG00000073067.10, intron 3 of 13) -6287 ENSMUSG00000073067.10 ENSMUSG00000073067 ENSMUST00000135612 9130019P16Rik processed_transcript Interval_139145 chr6 96019121 96019493 + 0 NA Intergenic Intergenic 14062 ENSMUSG00000107747.1 ENSMUSG00000107747 ENSMUST00000204737 Gm5881 processed_pseudogene Interval_87648 chr19 53989977 53990445 + 0 NA intron (ENSMUSG00000117981.1, intron 1 of 3) protein_coding-intron (ENSMUSG00000024976.14, intron 2 of 8) 2038 ENSMUSG00000024976.14 ENSMUSG00000024976 ENSMUST00000237801 Shoc2 protein_coding Interval_29054 chr11 80080347 80081664 + 0 NA promoter-TSS (ENSMUSG00000017561.16) protein_coding-promoter-TSS (ENSMUSG00000017561.16) -144 ENSMUSG00000017561.16 ENSMUSG00000017561 ENSMUST00000178280 Crlf3 protein_coding Interval_124890 chr5 59649771 59650580 + 0 NA Intergenic Intergenic -75933 ENSMUSG00000106634.1 ENSMUSG00000106634 ENSMUST00000198676 Gm43042 lincRNA Interval_115196 chr4 94247544 94248305 + 0 NA intron (ENSMUSG00000085931.1, intron 2 of 5) lincRNA-intron (ENSMUSG00000085931.1, intron 2 of 5) -147734 ENSMUSG00000081508.1 ENSMUSG00000081508 ENSMUST00000120387 Gm12654 processed_pseudogene Interval_6833 chr1 119956691 119957026 + 0 NA intron (ENSMUSG00000036962.12, intron 7 of 23) protein_coding-intron (ENSMUSG00000036962.12, intron 6 of 22) -29937 ENSMUSG00000092245.1 ENSMUSG00000092245 ENSMUST00000174509 Gm17973 processed_pseudogene Interval_86549 chr19 41629500 41630688 + 0 NA intron (ENSMUSG00000025020.11, intron 21 of 35) protein_coding-intron (ENSMUSG00000025020.11, intron 21 of 36) 41443 ENSMUSG00000098286.1 ENSMUSG00000098286 ENSMUST00000183602 Mir8091 miRNA Interval_4343 chr1 72833134 72833739 + 0 NA intron (ENSMUSG00000039323.18, intron 1 of 3) protein_coding-intron (ENSMUSG00000039323.18, intron 1 of 3) -15263 ENSMUSG00000039323.18 ENSMUSG00000039323 ENSMUST00000155703 Igfbp2 protein_coding Interval_40974 chr12 110373074 110374085 + 0 NA Intergenic Intergenic 48194 ENSMUSG00000114183.1 ENSMUSG00000114183 ENSMUST00000222991 Gm47195 processed_pseudogene Interval_94804 chr2 94470482 94471522 + 0 NA Intergenic Intergenic -32866 ENSMUSG00000027193.12 ENSMUSG00000027193 ENSMUST00000150930 Api5 protein_coding Interval_10284 chr1 167941828 167942083 + 0 NA Intergenic Intergenic -62184 ENSMUSG00000093538.2 ENSMUSG00000093538 ENSMUST00000177351 Gm20711 antisense Interval_163200 chr9 18041189 18043060 + 0 NA Intergenic Intergenic 19900 ENSMUSG00000111263.1 ENSMUSG00000111263 ENSMUST00000216198 Gm7680 processed_pseudogene Interval_80775 chr18 46983373 46983919 + 0 NA intron (ENSMUSG00000042705.9, intron 5 of 6) protein_coding-intron (ENSMUSG00000042705.9, intron 4 of 6) 1835 ENSMUSG00000087857.1 ENSMUSG00000087857 ENSMUST00000157232 Gm22791 snoRNA Interval_48558 chr13 100210367 100211051 + 0 NA Intergenic Intergenic -8748 ENSMUSG00000078945.10 ENSMUSG00000078945 ENSMUST00000167986 Naip2 protein_coding Interval_65346 chr16 21727595 21728575 + 0 NA Intergenic Intergenic -33505 ENSMUSG00000043391.10 ENSMUSG00000043391 ENSMUST00000232634 2510009E07Rik protein_coding Interval_98347 chr2 151674633 151675028 + 0 NA Intergenic Intergenic -6297 ENSMUSG00000074704.9 ENSMUSG00000074704 ENSMUST00000096439 Rad21l protein_coding Interval_164486 chr9 37430663 37430995 + 0 NA promoter-TSS (ENSMUSG00000032128.15) protein_coding-promoter-TSS (ENSMUSG00000032128.15) -8226 ENSMUSG00000032128.15 ENSMUSG00000032128 ENSMUST00000167216 Robo3 protein_coding Interval_158758 chr8 85947860 85949251 + 0 NA intron (ENSMUSG00000036879.15, intron 13 of 31) protein_coding-intron (ENSMUSG00000036879.15, intron 13 of 31) -45690 ENSMUSG00000098439.1 ENSMUSG00000098439 ENSMUST00000183645 Hm629797 sense_intronic Interval_86925 chr19 44913871 44915153 + 0 NA Intergenic Intergenic -28340 ENSMUSG00000036097.8 ENSMUSG00000036097 ENSMUST00000237505 Slf2 protein_coding Interval_150146 chr7 107377353 107377593 + 0 NA intron (ENSMUSG00000062542.11, intron 1 of 1) protein_coding-intron (ENSMUSG00000062542.11, intron 1 of 6) 11401 ENSMUSG00000109078.1 ENSMUSG00000109078 ENSMUST00000208516 Gm19033 processed_pseudogene Interval_161261 chr8 119358615 119359323 + 0 NA Intergenic Intergenic 14453 ENSMUSG00000031839.7 ENSMUSG00000031839 ENSMUST00000212795 Hsbp1 protein_coding Interval_32159 chr11 105796775 105797007 + 0 NA intron (ENSMUSG00000053580.16, intron 6 of 25) protein_coding-intron (ENSMUSG00000053580.16, intron 6 of 25) 23373 ENSMUSG00000083465.1 ENSMUSG00000083465 ENSMUST00000117842 Gm11652 processed_pseudogene Interval_60860 chr15 77201702 77204106 + 0 NA intron (ENSMUSG00000033565.18, intron 1 of 3) protein_coding-intron (ENSMUSG00000033565.18, intron 2 of 12) -24640 ENSMUSG00000116185.1 ENSMUSG00000116185 ENSMUST00000230993 Gm49411 TEC Interval_147869 chr7 74667134 74667665 + 0 NA Intergenic Intergenic -32457 ENSMUSG00000108570.1 ENSMUSG00000108570 ENSMUST00000206241 Gm7726 processed_pseudogene Interval_14981 chr10 41678636 41679226 + 0 NA intron (ENSMUSG00000075225.15, intron 6 of 13) protein_coding-intron (ENSMUSG00000075225.15, intron 1 of 12) 7125 ENSMUSG00000111376.1 ENSMUSG00000111376 ENSMUST00000214137 Gm47099 processed_pseudogene Interval_32249 chr11 106500729 106502854 + 0 NA TTS (ENSMUSG00000040548.16) protein_coding-TTS (ENSMUSG00000040548.16) 546 ENSMUSG00000080540.2 ENSMUSG00000080540 ENSMUST00000116890 Gm22711 snoRNA Interval_10635 chr1 172364440 172365100 + 0 NA intron (ENSMUSG00000044708.5, intron 1 of 1) protein_coding-intron (ENSMUSG00000044708.5, intron 1 of 1) -11776 ENSMUSG00000050229.3 ENSMUSG00000050229 ENSMUST00000052455 Pigm protein_coding Interval_135533 chr6 40068094 40068434 + 0 NA intron (ENSMUSG00000057716.7, intron 2 of 3) protein_coding-intron (ENSMUSG00000057716.7, intron 2 of 3) -30458 ENSMUSG00000102623.1 ENSMUSG00000102623 ENSMUST00000194880 Gm37673 TEC Interval_31085 chr11 98043378 98043933 + 0 NA promoter-TSS (ENSMUSG00000017400.10) protein_coding-promoter-TSS (ENSMUSG00000017400.10) -113 ENSMUSG00000017400.10 ENSMUSG00000017400 ENSMUST00000131519 Stac2 protein_coding Interval_137127 chr6 67819677 67821230 + 0 NA Intergenic Intergenic -15943 ENSMUSG00000087917.1 ENSMUSG00000087917 ENSMUST00000157292 Gm24911 snoRNA Interval_47729 chr13 91892838 91893667 + 0 NA intron (ENSMUSG00000021708.17, intron 10 of 14) protein_coding-intron (ENSMUSG00000021708.17, intron 29 of 33) -16367 ENSMUSG00000021622.3 ENSMUSG00000021622 ENSMUST00000022122 Ckmt2 protein_coding Interval_36442 chr12 44652753 44652978 + 0 NA Intergenic Intergenic -30203 ENSMUSG00000112823.1 ENSMUSG00000112823 ENSMUST00000217983 Gm6125 processed_pseudogene Interval_16297 chr10 62034001 62034288 + 0 NA Intergenic Intergenic 10740 ENSMUSG00000112018.1 ENSMUSG00000112018 ENSMUST00000220135 Gm47919 TEC Interval_10150 chr1 166126489 166127335 + 0 NA intron (ENSMUSG00000026564.9, intron 2 of 5) protein_coding-intron (ENSMUSG00000026564.9, intron 2 of 5) 1010 ENSMUSG00000026564.9 ENSMUSG00000026564 ENSMUST00000085992 Dusp27 protein_coding Interval_164624 chr9 40182080 40182636 + 0 NA intron (ENSMUSG00000051095.7, intron 1 of 1) protein_coding-intron (ENSMUSG00000051095.7, intron 1 of 1) 1438 ENSMUSG00000051095.7 ENSMUSG00000051095 ENSMUST00000062229 Olfr986 protein_coding Interval_68490 chr16 78165158 78165599 + 0 NA Intergenic Intergenic 48278 ENSMUSG00000116609.1 ENSMUSG00000116609 ENSMUST00000231333 Gm5675 processed_pseudogene Interval_74862 chr17 56944184 56944766 + 0 NA Intergenic Intergenic -13845 ENSMUSG00000117245.1 ENSMUSG00000117245 ENSMUST00000232883 Gm49887 lincRNA Interval_76520 chr17 80733173 80733609 + 0 NA Intergenic Intergenic 5260 ENSMUSG00000054957.5 ENSMUSG00000054957 ENSMUST00000068277 Gm9959 pseudogene Interval_147529 chr7 68073015 68073886 + 0 NA intron (ENSMUSG00000005533.10, intron 2 of 20) protein_coding-intron (ENSMUSG00000005533.10, intron 2 of 20) -138388 ENSMUSG00000005533.10 ENSMUSG00000005533 ENSMUST00000208871 Igf1r protein_coding Interval_31275 chr11 99276744 99276936 + 0 NA Intergenic Intergenic 8422 ENSMUSG00000020913.3 ENSMUSG00000020913 ENSMUST00000017255 Krt24 protein_coding Interval_21963 chr11 5443628 5445541 + 0 NA exon (ENSMUSG00000041961.14, exon 1 of 9) protein_coding-exon (ENSMUSG00000041961.14, exon 1 of 9) 50862 ENSMUSG00000085232.3 ENSMUSG00000085232 ENSMUST00000145746 Gm11962 processed_pseudogene Interval_17378 chr10 76203533 76204453 + 0 NA Intergenic Intergenic 3416 ENSMUSG00000076068.1 ENSMUSG00000076068 ENSMUST00000102114 Mir678 miRNA Interval_164357 chr9 35773003 35774063 + 0 NA Intergenic Intergenic 4576 ENSMUSG00000090738.2 ENSMUSG00000090738 ENSMUST00000171898 Pate7 protein_coding Interval_129631 chr5 121425067 121425322 + 0 NA exon (ENSMUSG00000042719.17, exon 12 of 12) protein_coding-exon (ENSMUSG00000042719.17, exon 12 of 12) -14809 ENSMUSG00000042719.17 ENSMUSG00000042719 ENSMUST00000174322 Naa25 protein_coding Interval_87512 chr19 53155922 53156600 + 0 NA intron (ENSMUSG00000025026.15, intron 2 of 14) protein_coding-intron (ENSMUSG00000025026.15, intron 2 of 14) 3602 ENSMUSG00000088855.1 ENSMUSG00000088855 ENSMUST00000158230 Gm24724 snRNA Interval_148647 chr7 83809270 83811207 + 0 NA intron (ENSMUSG00000109248.1, intron 1 of 3) lincRNA-intron (ENSMUSG00000109248.1, intron 1 of 3) -4469 ENSMUSG00000109450.1 ENSMUSG00000109450 ENSMUST00000207602 Gm39043 lincRNA Interval_125630 chr5 72890826 72892042 + 0 NA Intergenic Intergenic -23234 ENSMUSG00000036087.18 ENSMUSG00000036087 ENSMUST00000145939 Slain2 protein_coding Interval_12143 chr1 190068056 190068273 + 0 NA Intergenic Intergenic -100506 ENSMUSG00000099404.1 ENSMUSG00000099404 ENSMUST00000189880 Gm28172 antisense Interval_137683 chr6 79127085 79127930 + 0 NA Intergenic Intergenic 79391 ENSMUSG00000107772.1 ENSMUSG00000107772 ENSMUST00000203518 Gm5311 processed_pseudogene Interval_18792 chr10 90850655 90851418 + 0 NA promoter-TSS (ENSMUSG00000112601.1) TEC-promoter-TSS (ENSMUSG00000112601.1) -63 ENSMUSG00000112601.1 ENSMUSG00000112601 ENSMUST00000218261 Gm47590 TEC Interval_53996 chr14 64199621 64200476 + 0 NA intron (ENSMUSG00000054733.9, intron 5 of 5) protein_coding-intron (ENSMUSG00000054733.9, intron 10 of 10) 83734 ENSMUSG00000114284.1 ENSMUSG00000114284 ENSMUST00000225122 9630015K15Rik antisense Interval_157125 chr8 65659547 65659756 + 0 NA intron (ENSMUSG00000036469.16, intron 1 of 7) protein_coding-intron (ENSMUSG00000036469.16, intron 1 of 7) 8050 ENSMUSG00000064763.1 ENSMUSG00000064763 ENSMUST00000082829 Gm23515 snRNA Interval_90444 chr2 30473353 30475132 + 0 NA promoter-TSS (ENSMUSG00000089762.3) protein_coding-promoter-TSS (ENSMUSG00000089762.3) -23 ENSMUSG00000089762.3 ENSMUSG00000089762 ENSMUST00000065134 Ier5l protein_coding Interval_15257 chr10 43856041 43856464 + 0 NA Intergenic Intergenic 29672 ENSMUSG00000111342.1 ENSMUSG00000111342 ENSMUST00000217125 4933404K13Rik lincRNA Interval_111225 chr4 15132154 15132353 + 0 NA intron (ENSMUSG00000040536.15, intron 2 of 2) protein_coding-intron (ENSMUSG00000040536.15, intron 2 of 12) 16708 ENSMUSG00000040536.15 ENSMUSG00000040536 ENSMUST00000141105 Necab1 protein_coding Interval_7221 chr1 127981034 127981352 + 0 NA exon (ENSMUSG00000104164.1, exon 1 of 1) TEC-exon (ENSMUSG00000104164.1, exon 1 of 1) 3494 ENSMUSG00000104164.1 ENSMUSG00000104164 ENSMUST00000193744 Gm38248 TEC Interval_168985 chr9 90036233 90037205 + 0 NA Intergenic Intergenic 3476 ENSMUSG00000100060.1 ENSMUSG00000100060 ENSMUST00000186351 Gm17944 processed_pseudogene Interval_17173 chr10 73812306 73812648 + 0 NA intron (ENSMUSG00000052613.16, intron 3 of 13) protein_coding-intron (ENSMUSG00000052613.16, intron 3 of 13) -121672 ENSMUSG00000093548.1 ENSMUSG00000093548 ENSMUST00000176468 Gm6407 processed_pseudogene Interval_114126 chr4 63765216 63765425 + 0 NA Intergenic Intergenic -20207 ENSMUSG00000050395.9 ENSMUSG00000050395 ENSMUST00000062246 Tnfsf15 protein_coding Interval_151333 chr7 121130034 121131111 + 0 NA intron (ENSMUSG00000034990.15, intron 6 of 17) protein_coding-intron (ENSMUSG00000034990.15, intron 16 of 28) 48922 ENSMUSG00000034990.15 ENSMUSG00000034990 ENSMUST00000163275 Otoa protein_coding Interval_35372 chr12 21135744 21136424 + 0 NA intron (ENSMUSG00000052632.16, intron 1 of 27) protein_coding-intron (ENSMUSG00000052632.16, intron 1 of 26) 93125 ENSMUSG00000092229.3 ENSMUSG00000092229 ENSMUST00000174304 Gm5977 transcribed_unprocessed_pseudogene Interval_129380 chr5 119634744 119636074 + 0 NA TTS (ENSMUSG00000085708.1) lincRNA-TTS (ENSMUSG00000085708.1) -8104 ENSMUSG00000087516.7 ENSMUSG00000087516 ENSMUST00000129108 Tbx3os1 antisense Interval_18652 chr10 88816221 88816479 + 0 NA intron (ENSMUSG00000004356.8, intron 10 of 61) protein_coding-intron (ENSMUSG00000004356.8, intron 10 of 61) 10433 ENSMUSG00000004356.8 ENSMUSG00000004356 ENSMUST00000220439 Utp20 protein_coding Interval_132409 chr5 144761178 144761994 + 0 NA promoter-TSS (ENSMUSG00000043388.8) protein_coding-promoter-TSS (ENSMUSG00000043388.8) 232 ENSMUSG00000043388.8 ENSMUSG00000043388 ENSMUST00000197254 Tmem130 protein_coding Interval_28607 chr11 77125716 77126808 + 0 NA intron (ENSMUSG00000050944.14, intron 5 of 11) protein_coding-intron (ENSMUSG00000050944.14, intron 9 of 17) -18082 ENSMUSG00000082550.1 ENSMUSG00000082550 ENSMUST00000117087 Gm12344 processed_pseudogene Interval_156446 chr8 48250264 48250558 + 0 NA intron (ENSMUSG00000031561.16, intron 23 of 26) protein_coding-intron (ENSMUSG00000031561.16, intron 25 of 28) 20574 ENSMUSG00000110480.1 ENSMUSG00000110480 ENSMUST00000212653 Gm32842 processed_pseudogene Interval_18172 chr10 83219193 83220184 + 0 NA Intergenic Intergenic -61561 ENSMUSG00000088270.1 ENSMUSG00000088270 ENSMUST00000157645 Gm23122 snRNA Interval_2397 chr1 38987125 38988202 + 0 NA promoter-TSS (ENSMUSG00000026078.10) protein_coding-promoter-TSS (ENSMUSG00000026078.10) -202 ENSMUSG00000026078.10 ENSMUSG00000026078 ENSMUST00000193073 Pdcl3 protein_coding Interval_76236 chr17 78297233 78298474 + 0 NA intron (ENSMUSG00000024074.8, intron 2 of 5) protein_coding-intron (ENSMUSG00000024074.8, intron 4 of 16) -4808 ENSMUSG00000092979.1 ENSMUSG00000092979 ENSMUST00000175238 Gm25069 miRNA Interval_60262 chr15 71294701 71295575 + 0 NA Intergenic Intergenic -14696 ENSMUSG00000116355.1 ENSMUSG00000116355 ENSMUST00000229873 Gm5217 processed_pseudogene Interval_76255 chr17 78545752 78546960 + 0 NA intron (ENSMUSG00000024076.10, intron 2 of 12) protein_coding-intron (ENSMUSG00000024076.10, intron 2 of 13) -12343 ENSMUSG00000087959.1 ENSMUSG00000087959 ENSMUST00000157334 Gm22562 rRNA Interval_47925 chr13 94424824 94425018 + 0 NA intron (ENSMUSG00000021686.6, intron 7 of 26) protein_coding-intron (ENSMUSG00000021686.6, intron 7 of 26) -47942 ENSMUSG00000021686.6 ENSMUSG00000021686 ENSMUST00000220505 Ap3b1 protein_coding Interval_72757 chr17 31959182 31960993 + 0 NA intron (ENSMUSG00000002076.12, intron 3 of 3) protein_coding-intron (ENSMUSG00000002076.12, intron 7 of 7) 9553 ENSMUSG00000091548.2 ENSMUSG00000091548 ENSMUST00000171455 Gm17572 processed_pseudogene Interval_73002 chr17 34082876 34083492 + 0 NA TTS (ENSMUSG00000098197.2) antisense-TTS (ENSMUSG00000098197.2) -1417 ENSMUSG00000098241.2 ENSMUSG00000098241 ENSMUST00000182803 H2-Pa unprocessed_pseudogene Interval_94186 chr2 84913660 84913869 + 0 NA Intergenic Intergenic -14310 ENSMUSG00000092843.1 ENSMUSG00000092843 ENSMUST00000175102 Gm24332 miRNA Interval_126562 chr5 90286356 90287329 + 0 NA intron (ENSMUSG00000055204.15, intron 11 of 26) protein_coding-intron (ENSMUSG00000055204.15, intron 11 of 33) -70820 ENSMUSG00000035505.14 ENSMUSG00000035505 ENSMUST00000148480 Cox18 protein_coding Interval_143952 chr7 18453315 18454023 + 0 NA Intergenic Intergenic 3019 ENSMUSG00000108906.1 ENSMUSG00000108906 ENSMUST00000208964 Gm8314 processed_pseudogene Interval_68913 chr16 88527140 88527844 + 0 NA Intergenic Intergenic -20514 ENSMUSG00000055811.2 ENSMUSG00000055811 ENSMUST00000069549 Cldn17 protein_coding Interval_99818 chr2 165113738 165114043 + 0 NA intron (ENSMUSG00000053166.14, intron 10 of 10) protein_coding-intron (ENSMUSG00000053166.14, intron 11 of 11) -23140 ENSMUSG00000078935.1 ENSMUSG00000078935 ENSMUST00000109304 1700025C18Rik protein_coding Interval_53223 chr14 55270722 55271419 + 0 NA Intergenic Intergenic 9617 ENSMUSG00000114987.1 ENSMUSG00000114987 ENSMUST00000227782 Gm49022 lincRNA Interval_895 chr1 13050072 13050398 + 0 NA Intergenic Intergenic 9716 ENSMUSG00000104518.1 ENSMUSG00000104518 ENSMUST00000191708 Gm37162 TEC Interval_129513 chr5 120665051 120666388 + 0 NA intron (ENSMUSG00000029602.11, intron 12 of 20) protein_coding-intron (ENSMUSG00000029602.11, intron 13 of 21) 16360 ENSMUSG00000029603.15 ENSMUSG00000029603 ENSMUST00000124079 Dtx1 protein_coding Interval_78356 chr18 12133329 12134543 + 0 NA intron (ENSMUSG00000024404.7, intron 1 of 5) protein_coding-intron (ENSMUSG00000024404.7, intron 1 of 12) -12456 ENSMUSG00000049411.15 ENSMUSG00000049411 ENSMUST00000234833 Tmem241 protein_coding Interval_136014 chr6 49615839 49616316 + 0 NA Intergenic Intergenic -72350 ENSMUSG00000108266.1 ENSMUSG00000108266 ENSMUST00000204010 Gm5305 processed_pseudogene Interval_101942 chr3 12587772 12587985 + 0 NA Intergenic Intergenic -43382 ENSMUSG00000104177.1 ENSMUSG00000104177 ENSMUST00000194635 Gm2429 processed_pseudogene Interval_146446 chr7 45971985 45974052 + 0 NA exon (ENSMUSG00000109702.1, exon 2 of 3) processed_pseudogene-exon (ENSMUSG00000109702.1, exon 2 of 3) 606 ENSMUSG00000109702.1 ENSMUSG00000109702 ENSMUST00000210043 Gm45674 processed_pseudogene Interval_104782 chr3 73053558 73053832 + 0 NA intron (ENSMUSG00000048304.8, intron 1 of 1) protein_coding-intron (ENSMUSG00000048304.8, intron 1 of 1) 3248 ENSMUSG00000048304.8 ENSMUSG00000048304 ENSMUST00000059407 Slitrk3 protein_coding Interval_96759 chr2 127792005 127793606 + 0 NA promoter-TSS (ENSMUSG00000051319.6) protein_coding-promoter-TSS (ENSMUSG00000051319.6) -317 ENSMUSG00000051319.6 ENSMUSG00000051319 ENSMUST00000135091 Mtln protein_coding Interval_95648 chr2 113459264 113459554 + 0 NA intron (ENSMUSG00000044042.19, intron 3 of 17) protein_coding-intron (ENSMUSG00000044042.19, intron 2 of 16) -17105 ENSMUSG00000087545.1 ENSMUSG00000087545 ENSMUST00000148420 Gm13966 antisense Interval_46864 chr13 72817021 72818414 + 0 NA promoter-TSS (ENSMUSG00000113082.1) lincRNA-promoter-TSS (ENSMUSG00000113082.1) -954 ENSMUSG00000113082.1 ENSMUSG00000113082 ENSMUST00000223149 D730050B12Rik lincRNA Interval_27390 chr11 67214843 67215183 + 0 NA exon (ENSMUSG00000056328.14, exon 27 of 40) protein_coding-exon (ENSMUSG00000056328.14, exon 27 of 40) 14875 ENSMUSG00000056328.14 ENSMUSG00000056328 ENSMUST00000075734 Myh1 protein_coding Interval_161422 chr8 120374771 120375807 + 0 NA intron (ENSMUSG00000031822.20, intron 2 of 2) protein_coding-intron (ENSMUSG00000092329.1, intron 1 of 15) 68260 ENSMUSG00000080549.2 ENSMUSG00000080549 ENSMUST00000116899 Gm22715 miRNA Interval_144787 chr7 28255433 28255951 + 0 NA Intergenic Intergenic -12189 ENSMUSG00000046058.7 ENSMUSG00000046058 ENSMUST00000059596 Eid2 protein_coding Interval_132982 chr5 149084492 149084860 + 0 NA intron (ENSMUSG00000066551.12, intron 2 of 5) protein_coding-intron (ENSMUSG00000066551.12, intron 2 of 5) 38736 ENSMUSG00000097191.2 ENSMUSG00000097191 ENSMUST00000200718 Mm2pr lincRNA Interval_160898 chr8 114777135 114778384 + 0 NA intron (ENSMUSG00000004637.15, intron 8 of 8) protein_coding-intron (ENSMUSG00000004637.15, intron 8 of 8) 65592 ENSMUSG00000004637.15 ENSMUSG00000004637 ENSMUST00000162052 Wwox protein_coding Interval_127345 chr5 103291260 103291533 + 0 NA intron (ENSMUSG00000104956.1, intron 1 of 6) lincRNA-intron (ENSMUSG00000104956.1, intron 1 of 6) 7633 ENSMUSG00000104956.1 ENSMUSG00000104956 ENSMUST00000198193 4930429D17Rik lincRNA Interval_48427 chr13 98941491 98942226 + 0 NA intron (ENSMUSG00000114569.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000114569.1, intron 1 of 2) 4058 ENSMUSG00000114569.1 ENSMUSG00000114569 ENSMUST00000223733 Gm35215 lincRNA Interval_73625 chr17 41504713 41505446 + 0 NA Intergenic Intergenic 158609 ENSMUSG00000117001.1 ENSMUSG00000117001 ENSMUST00000232972 Gm49858 processed_pseudogene Interval_129371 chr5 119594802 119595318 + 0 NA TTS (ENSMUSG00000106991.1) TEC-TTS (ENSMUSG00000106991.1) 3144 ENSMUSG00000106991.1 ENSMUSG00000106991 ENSMUST00000202546 Gm43399 TEC Interval_162741 chr9 8209013 8209932 + 0 NA Intergenic Intergenic -12498 ENSMUSG00000031998.5 ENSMUSG00000031998 ENSMUST00000213708 1700128F08Rik transcribed_processed_pseudogene Interval_57005 chr15 3995435 3996494 + 0 NA promoter-TSS (ENSMUSG00000041935.10) protein_coding-promoter-TSS (ENSMUSG00000041935.10) -75 ENSMUSG00000097662.1 ENSMUSG00000097662 ENSMUST00000180518 Gm2093 lincRNA Interval_121260 chr4 154481774 154482150 + 0 NA intron (ENSMUSG00000039410.16, intron 2 of 2) protein_coding-intron (ENSMUSG00000039410.16, intron 2 of 16) -68320 ENSMUSG00000086565.1 ENSMUSG00000086565 ENSMUST00000143888 Gm13133 antisense Interval_98764 chr2 154801587 154802437 + 0 NA intron (ENSMUSG00000027593.15, intron 2 of 3) protein_coding-intron (ENSMUSG00000027593.15, intron 1 of 9) 10658 ENSMUSG00000027593.15 ENSMUSG00000027593 ENSMUST00000151578 Raly protein_coding Interval_149924 chr7 102679890 102680159 + 0 NA promoter-TSS (ENSMUSG00000073968.4) protein_coding-promoter-TSS (ENSMUSG00000073968.4) 3488 ENSMUSG00000110352.1 ENSMUSG00000110352 ENSMUST00000209454 Gm45687 unprocessed_pseudogene Interval_93839 chr2 77347340 77347587 + 0 NA Intergenic Intergenic 12104 ENSMUSG00000082006.1 ENSMUSG00000082006 ENSMUST00000122325 Gm13649 processed_pseudogene Interval_44734 chr13 48017596 48019032 + 0 NA intron (ENSMUSG00000047324.5, intron 1 of 7) lincRNA-intron (ENSMUSG00000047324.5, intron 1 of 7) 294 ENSMUSG00000047324.5 ENSMUSG00000047324 ENSMUST00000061899 4931429P17Rik lincRNA Interval_146761 chr7 50029434 50030003 + 0 NA intron (ENSMUSG00000055409.14, intron 2 of 9) protein_coding-intron (ENSMUSG00000055409.14, intron 2 of 19) -68592 ENSMUSG00000055409.14 ENSMUSG00000055409 ENSMUST00000154410 Nell1 protein_coding Interval_154370 chr8 15050826 15051223 + 0 NA TTS (ENSMUSG00000109965.1) lincRNA-TTS (ENSMUSG00000109965.1) 4812 ENSMUSG00000109965.1 ENSMUSG00000109965 ENSMUST00000209938 Gm45274 lincRNA Interval_79580 chr18 33855111 33855384 + 0 NA intron (ENSMUSG00000024376.7, intron 12 of 23) protein_coding-intron (ENSMUSG00000024376.7, intron 12 of 23) 60083 ENSMUSG00000092819.1 ENSMUSG00000092819 ENSMUST00000175078 Gm23639 snoRNA Interval_149831 chr7 101866598 101870028 + 0 NA promoter-TSS (ENSMUSG00000001827.12) protein_coding-promoter-TSS (ENSMUSG00000001827.12) 2474 ENSMUSG00000001827.12 ENSMUSG00000001827 ENSMUST00000125298 Folr1 protein_coding Interval_55501 chr14 89324846 89326027 + 0 NA Intergenic Intergenic -25589 ENSMUSG00000102164.1 ENSMUSG00000102164 ENSMUST00000192706 Gm36946 TEC Interval_135827 chr6 47608123 47609767 + 0 NA Intergenic Intergenic -13887 ENSMUSG00000029687.16 ENSMUSG00000029687 ENSMUST00000170327 Ezh2 protein_coding Interval_35594 chr12 25141381 25141838 + 0 NA Intergenic Intergenic -9306 ENSMUSG00000113587.1 ENSMUSG00000113587 ENSMUST00000223481 Gm36287 lincRNA Interval_46768 chr13 70123856 70125753 + 0 NA Intergenic Intergenic -24996 ENSMUSG00000113573.1 ENSMUSG00000113573 ENSMUST00000222864 AU017674 lincRNA Interval_65064 chr16 18800191 18800748 + 0 NA intron (ENSMUSG00000000028.15, intron 6 of 17) protein_coding-intron (ENSMUSG00000000028.15, intron 8 of 19) 11122 ENSMUSG00000000028.15 ENSMUSG00000000028 ENSMUST00000231819 Cdc45 protein_coding Interval_43276 chr13 28607662 28607906 + 0 NA intron (ENSMUSG00000085936.7, intron 6 of 7) processed_transcript-intron (ENSMUSG00000085936.7, intron 5 of 5) -90844 ENSMUSG00000085936.7 ENSMUSG00000085936 ENSMUST00000134624 2610307P16Rik processed_transcript Interval_39495 chr12 88471969 88472259 + 0 NA Intergenic Intergenic -29895 ENSMUSG00000113087.1 ENSMUSG00000113087 ENSMUST00000221624 4930473H19Rik antisense Interval_80573 chr18 44380368 44381150 + 0 NA intron (ENSMUSG00000024472.9, intron 1 of 1) protein_coding-intron (ENSMUSG00000024472.9, intron 1 of 10) 257 ENSMUSG00000024472.9 ENSMUSG00000024472 ENSMUST00000025350 Dcp2 protein_coding Interval_152503 chr7 133620574 133620947 + 0 NA Intergenic Intergenic 6965 ENSMUSG00000101546.1 ENSMUSG00000101546 ENSMUST00000185366 Gm28747 lincRNA Interval_15012 chr10 41914094 41914430 + 0 NA TTS (ENSMUSG00000071324.11) protein_coding-TTS (ENSMUSG00000071324.11) 15889 ENSMUSG00000038332.13 ENSMUSG00000038332 ENSMUST00000214835 Sesn1 protein_coding Interval_66528 chr16 34837936 34838787 + 0 NA intron (ENSMUSG00000022836.11, intron 2 of 5) protein_coding-intron (ENSMUSG00000022836.11, intron 2 of 31) -66778 ENSMUSG00000022836.11 ENSMUSG00000022836 ENSMUST00000231589 Mylk protein_coding Interval_104786 chr3 73182334 73182664 + 0 NA intron (ENSMUSG00000103428.1, intron 1 of 4) lincRNA-intron (ENSMUSG00000103428.1, intron 1 of 1) 18413 ENSMUSG00000102916.1 ENSMUSG00000102916 ENSMUST00000193965 Gm37725 TEC Interval_7022 chr1 122518337 122518529 + 0 NA Intergenic Intergenic -3316 ENSMUSG00000103263.1 ENSMUSG00000103263 ENSMUST00000193796 Gm36982 TEC Interval_95224 chr2 104981468 104982188 + 0 NA intron (ENSMUSG00000045106.12, intron 12 of 13) protein_coding-intron (ENSMUSG00000045106.12, intron 13 of 17) 24995 ENSMUSG00000027170.12 ENSMUSG00000027170 ENSMUST00000111110 Eif3m protein_coding Interval_34968 chr12 15852611 15852965 + 0 NA intron (ENSMUSG00000097580.1, intron 2 of 2) bidirectional_promoter_lncRNA-intron (ENSMUSG00000097580.1, intron 2 of 2) -2163 ENSMUSG00000113629.1 ENSMUSG00000113629 ENSMUST00000221592 Gm48558 lincRNA Interval_130554 chr5 128776204 128776538 + 0 NA promoter-TSS (ENSMUSG00000106522.1) sense_intronic-promoter-TSS (ENSMUSG00000106522.1) -821 ENSMUSG00000106522.1 ENSMUSG00000106522 ENSMUST00000199333 Gm42871 sense_intronic Interval_127211 chr5 101365235 101365934 + 0 NA Intergenic Intergenic 60006 ENSMUSG00000105965.1 ENSMUSG00000105965 ENSMUST00000197114 Cycs-ps2 processed_pseudogene Interval_99520 chr2 162939545 162940001 + 0 NA Intergenic Intergenic -3702 ENSMUSG00000035576.13 ENSMUSG00000035576 ENSMUST00000125296 L3mbtl1 protein_coding Interval_42807 chr13 19818963 19820056 + 0 NA intron (ENSMUSG00000053101.3, intron 1 of 1) protein_coding-intron (ENSMUSG00000053101.3, intron 1 of 4) -1230 ENSMUSG00000113542.1 ENSMUSG00000113542 ENSMUST00000223330 Gm19154 processed_pseudogene Interval_48171 chr13 96949081 96949358 + 0 NA exon (ENSMUSG00000091387.2, exon 3 of 3) protein_coding-exon (ENSMUSG00000091387.2, exon 3 of 3) 1695 ENSMUSG00000114154.1 ENSMUSG00000114154 ENSMUST00000222094 Gm48597 antisense Interval_17519 chr10 77464250 77464911 + 0 NA intron (ENSMUSG00000112818.1, intron 2 of 3) lincRNA-intron (ENSMUSG00000112818.1, intron 2 of 3) 6663 ENSMUSG00000112818.1 ENSMUSG00000112818 ENSMUST00000218522 Gm35920 lincRNA Interval_39894 chr12 99400999 99402221 + 0 NA intron (ENSMUSG00000033713.12, intron 3 of 3) protein_coding-intron (ENSMUSG00000033713.12, intron 1 of 5) -24362 ENSMUSG00000113610.1 ENSMUSG00000113610 ENSMUST00000223488 Gm47132 TEC Interval_171066 chr9 114086262 114087860 + 0 NA intron (ENSMUSG00000086596.2, intron 4 of 4) protein_coding-intron (ENSMUSG00000086596.2, intron 4 of 4) 29616 ENSMUSG00000118582.1 ENSMUSG00000118582 ENSMUST00000239187 AC157997.1 unprocessed_pseudogene Interval_104503 chr3 66970240 66971248 + 0 NA TTS (ENSMUSG00000027833.16) protein_coding-TTS (ENSMUSG00000027833.16) 8067 ENSMUSG00000027833.16 ENSMUSG00000027833 ENSMUST00000195261 Shox2 protein_coding Interval_147386 chr7 66333888 66334384 + 0 NA intron (ENSMUSG00000015133.17, intron 3 of 33) protein_coding-intron (ENSMUSG00000015133.17, intron 3 of 33) 24941 ENSMUSG00000109119.1 ENSMUSG00000109119 ENSMUST00000207140 Gm44752 antisense Interval_166666 chr9 61711311 61711648 + 0 NA Intergenic Intergenic -51605 ENSMUSG00000111739.1 ENSMUSG00000111739 ENSMUST00000213572 Gm47241 processed_pseudogene Interval_76251 chr17 78484643 78484864 + 0 NA Intergenic Intergenic -6829 ENSMUSG00000061062.5 ENSMUSG00000061062 ENSMUST00000079363 Hdac1-ps processed_pseudogene Interval_38016 chr12 73981350 73981630 + 0 NA intron (ENSMUSG00000021113.5, intron 4 of 4) protein_coding-intron (ENSMUSG00000021113.5, intron 8 of 9) 17009 ENSMUSG00000021113.5 ENSMUSG00000021113 ENSMUST00000220909 Snapc1 protein_coding Interval_44134 chr13 41113892 41114699 + 0 NA promoter-TSS (ENSMUSG00000038651.15) protein_coding-promoter-TSS (ENSMUSG00000038651.15) -8612 ENSMUSG00000021362.7 ENSMUSG00000021362 ENSMUST00000225271 Gcm2 protein_coding Interval_85274 chr19 24286885 24287316 + 0 NA Intergenic Intergenic -2616 ENSMUSG00000082107.1 ENSMUSG00000082107 ENSMUST00000118970 Gm16216 processed_pseudogene Interval_152332 chr7 131899462 131899930 + 0 NA intron (ENSMUSG00000030849.18, intron 2 of 6) protein_coding-intron (ENSMUSG00000030849.18, intron 2 of 6) 32958 ENSMUSG00000109340.1 ENSMUSG00000109340 ENSMUST00000208929 Gm44548 processed_pseudogene Interval_92467 chr2 59889321 59890484 + 0 NA Intergenic Intergenic -27176 ENSMUSG00000026988.15 ENSMUSG00000026988 ENSMUST00000131285 Wdsub1 protein_coding Interval_44776 chr13 48540459 48540719 + 0 NA intron (ENSMUSG00000097375.3, intron 1 of 1) lincRNA-intron (ENSMUSG00000097375.3, intron 1 of 1) -2317 ENSMUSG00000065421.3 ENSMUSG00000065421 ENSMUST00000083487 Mirlet7a-1 miRNA Interval_147478 chr7 67629481 67631344 + 0 NA intron (ENSMUSG00000030556.13, intron 1 of 7) protein_coding-intron (ENSMUSG00000030556.13, intron 2 of 5) -7353 ENSMUSG00000109558.1 ENSMUSG00000109558 ENSMUST00000209153 Gm45100 processed_pseudogene Interval_36214 chr12 39622603 39622805 + 0 NA Intergenic Intergenic 1289 ENSMUSG00000077269.1 ENSMUSG00000077269 ENSMUST00000104081 Gm24434 snoRNA Interval_136663 chr6 57332983 57333755 + 0 NA Intergenic Intergenic -3875 ENSMUSG00000115792.1 ENSMUSG00000115792 ENSMUST00000227168 Vmn1r16 protein_coding Interval_142325 chr6 140646086 140647343 + 0 NA promoter-TSS (ENSMUSG00000030232.18) protein_coding-promoter-TSS (ENSMUSG00000030232.18) 9976 ENSMUSG00000030232.18 ENSMUSG00000030232 ENSMUST00000160772 Aebp2 protein_coding Interval_99371 chr2 160376150 160376864 + 0 NA Intergenic Intergenic -9442 ENSMUSG00000074622.4 ENSMUSG00000074622 ENSMUST00000099126 Mafb protein_coding Interval_928 chr1 13225905 13226347 + 0 NA intron (ENSMUSG00000005886.14, intron 1 of 3) protein_coding-intron (ENSMUSG00000005886.14, intron 2 of 22) 10308 ENSMUSG00000103495.1 ENSMUSG00000103495 ENSMUST00000195811 Gm37409 TEC Interval_126895 chr5 96818988 96819390 + 0 NA intron (ENSMUSG00000029484.12, intron 6 of 7) protein_coding-intron (ENSMUSG00000029484.12, intron 5 of 12) 20982 ENSMUSG00000105356.1 ENSMUSG00000105356 ENSMUST00000199893 Gm42603 TEC Interval_20705 chr10 120392289 120392526 + 0 NA exon (ENSMUSG00000090191.1, exon 3 of 3) antisense-exon (ENSMUSG00000090191.1, exon 3 of 3) 2884 ENSMUSG00000090191.1 ENSMUSG00000090191 ENSMUST00000161291 9230105E05Rik antisense Interval_4713 chr1 77496555 77497325 + 0 NA promoter-TSS (ENSMUSG00000099141.1) miRNA-promoter-TSS (ENSMUSG00000099141.1) -172 ENSMUSG00000099141.1 ENSMUSG00000099141 ENSMUST00000184495 Mir6352 miRNA Interval_44343 chr13 43908107 43909531 + 0 NA Intergenic Intergenic 36017 ENSMUSG00000089107.1 ENSMUSG00000089107 ENSMUST00000158482 Gm23117 snRNA Interval_51256 chr14 25570366 25571486 + 0 NA intron (ENSMUSG00000007817.15, intron 3 of 3) protein_coding-intron (ENSMUSG00000007817.15, intron 3 of 23) 36487 ENSMUSG00000093081.1 ENSMUSG00000093081 ENSMUST00000175340 Mir3075 miRNA Interval_17029 chr10 70611658 70612211 + 0 NA intron (ENSMUSG00000037747.9, intron 3 of 5) protein_coding-intron (ENSMUSG00000037747.9, intron 2 of 2) -12644 ENSMUSG00000037747.9 ENSMUSG00000037747 ENSMUST00000160127 Phyhipl protein_coding Interval_149768 chr7 101357479 101357958 + 0 NA intron (ENSMUSG00000032812.18, intron 1 of 33) protein_coding-intron (ENSMUSG00000032812.18, intron 1 of 33) -3279 ENSMUSG00000109656.1 ENSMUSG00000109656 ENSMUST00000210076 Gm45548 TEC Interval_63986 chr16 5013008 5013873 + 0 NA promoter-TSS (ENSMUSG00000022540.16) protein_coding-promoter-TSS (ENSMUSG00000022540.16) 96 ENSMUSG00000022540.16 ENSMUSG00000022540 ENSMUST00000202998 Rogdi protein_coding Interval_120482 chr4 148884352 148884747 + 0 NA intron (ENSMUSG00000028977.17, intron 2 of 20) protein_coding-intron (ENSMUSG00000028977.17, intron 2 of 15) 29775 ENSMUSG00000086766.1 ENSMUSG00000086766 ENSMUST00000151967 Gm15969 antisense Interval_30196 chr11 90429698 90429917 + 0 NA Intergenic Intergenic -41834 ENSMUSG00000003949.16 ENSMUSG00000003949 ENSMUST00000145786 Hlf protein_coding Interval_87257 chr19 47219173 47219969 + 0 NA intron (ENSMUSG00000006435.16, intron 1 of 2) protein_coding-intron (ENSMUSG00000006435.16, intron 1 of 5) 2338 ENSMUSG00000117659.1 ENSMUSG00000117659 ENSMUST00000236562 Gm50339 antisense Interval_99779 chr2 164859391 164860221 + 0 NA Intergenic Intergenic -2186 ENSMUSG00000017754.13 ENSMUSG00000017754 ENSMUST00000128110 Pltp protein_coding Interval_102347 chr3 22083739 22085094 + 0 NA intron (ENSMUSG00000027630.13, intron 1 of 15) protein_coding-intron (ENSMUSG00000027630.13, intron 1 of 15) -3301 ENSMUSG00000103293.1 ENSMUSG00000103293 ENSMUST00000195073 Gm5842 processed_pseudogene Interval_85409 chr19 25568273 25568500 + 0 NA intron (ENSMUSG00000024837.15, intron 3 of 3) protein_coding-intron (ENSMUSG00000024837.15, intron 4 of 4) -41915 ENSMUSG00000042372.5 ENSMUSG00000042372 ENSMUST00000048935 Dmrt3 protein_coding Interval_6958 chr1 121380009 121381010 + 0 NA Intergenic Intergenic -20609 ENSMUSG00000101791.1 ENSMUSG00000101791 ENSMUST00000190690 2210011K15Rik lincRNA Interval_31756 chr11 102659263 102659772 + 0 NA TTS (ENSMUSG00000076129.1) miRNA-TTS (ENSMUSG00000076129.1) 163 ENSMUSG00000076129.1 ENSMUSG00000076129 ENSMUST00000102175 Gm22920 miRNA Interval_31998 chr11 104355702 104356155 + 0 NA intron (ENSMUSG00000018412.16, intron 6 of 13) protein_coding-intron (ENSMUSG00000018412.16, intron 7 of 14) 69372 ENSMUSG00000106014.1 ENSMUSG00000106014 ENSMUST00000195891 Gm47315 miRNA Interval_165123 chr9 44685179 44686067 + 0 NA TTS (ENSMUSG00000048537.16) protein_coding-TTS (ENSMUSG00000048537.16) 2327 ENSMUSG00000032098.13 ENSMUSG00000032098 ENSMUST00000150822 Treh protein_coding Interval_112054 chr4 33595194 33596212 + 0 NA Intergenic Intergenic 33258 ENSMUSG00000096184.1 ENSMUSG00000096184 ENSMUST00000180209 Gm23304 miRNA Interval_71353 chr17 22589881 22590897 + 0 NA Intergenic Intergenic -10562 ENSMUSG00000094921.2 ENSMUSG00000094921 ENSMUST00000234826 Vmn2r112 protein_coding Interval_134993 chr6 34383492 34385724 + 0 NA intron (ENSMUSG00000061758.13, intron 1 of 9) protein_coding-intron (ENSMUSG00000061758.13, intron 1 of 9) -3819 ENSMUSG00000081991.1 ENSMUSG00000081991 ENSMUST00000119936 Gm13859 unprocessed_pseudogene Interval_96951 chr2 129822918 129824401 + 0 NA intron (ENSMUSG00000037885.18, intron 3 of 3) protein_coding-intron (ENSMUSG00000037885.18, intron 3 of 3) 23142 ENSMUSG00000037885.18 ENSMUSG00000037885 ENSMUST00000166282 Stk35 protein_coding Interval_117027 chr4 119087319 119089077 + 0 NA Intergenic Intergenic -19087 ENSMUSG00000066060.5 ENSMUSG00000066060 ENSMUST00000128998 Gm12866 lincRNA Interval_165161 chr9 44910599 44910979 + 0 NA Intergenic Intergenic 8077 ENSMUSG00000038717.8 ENSMUSG00000038717 ENSMUST00000213999 Atp5l protein_coding Interval_64832 chr16 16278596 16278961 + 0 NA Intergenic Intergenic 3175 ENSMUSG00000115882.1 ENSMUSG00000115882 ENSMUST00000231183 Gm5481 processed_pseudogene Interval_51599 chr14 30593443 30594558 + 0 NA Intergenic Intergenic 15295 ENSMUSG00000021948.17 ENSMUSG00000021948 ENSMUST00000227078 Prkcd protein_coding Interval_47471 chr13 84936769 84937610 + 0 NA Intergenic Intergenic 37128 ENSMUSG00000114338.1 ENSMUSG00000114338 ENSMUST00000225386 Gm4059 processed_pseudogene Interval_31500 chr11 101048525 101048716 + 0 NA intron (ENSMUSG00000019302.16, intron 18 of 20) protein_coding-intron (ENSMUSG00000019302.16, intron 18 of 21) 18280 ENSMUSG00000098415.1 ENSMUSG00000098415 ENSMUST00000185166 Mir6928 miRNA Interval_12301 chr1 191533846 191534137 + 0 NA Intergenic Intergenic 2901 ENSMUSG00000102246.1 ENSMUSG00000102246 ENSMUST00000192556 9430037O13Rik TEC Interval_112006 chr4 33197628 33198529 + 0 NA Intergenic Intergenic -3686 ENSMUSG00000083887.1 ENSMUSG00000083887 ENSMUST00000117788 Gm11930 processed_pseudogene Interval_143045 chr6 148881555 148883135 + 0 NA intron (ENSMUSG00000030309.16, intron 3 of 3) protein_coding-intron (ENSMUSG00000030309.16, intron 4 of 17) 13817 ENSMUSG00000030309.16 ENSMUSG00000030309 ENSMUST00000122909 Caprin2 protein_coding Interval_11826 chr1 185955521 185956751 + 0 NA Intergenic Intergenic -77251 ENSMUSG00000102546.1 ENSMUSG00000102546 ENSMUST00000194568 Gm9722 processed_pseudogene Interval_153188 chr7 142249815 142250302 + 0 NA TTS (ENSMUSG00000110254.1) unprocessed_pseudogene-TTS (ENSMUSG00000110254.1) 1480 ENSMUSG00000110254.1 ENSMUSG00000110254 ENSMUST00000211640 Gm47762 unprocessed_pseudogene Interval_27816 chr11 70179360 70179643 + 0 NA Intergenic Intergenic 10191 ENSMUSG00000000318.16 ENSMUSG00000000318 ENSMUST00000153959 Clec10a protein_coding Interval_75199 chr17 64616496 64617523 + 0 NA intron (ENSMUSG00000024085.13, intron 1 of 21) protein_coding-intron (ENSMUSG00000024085.13, intron 1 of 21) -61349 ENSMUSG00000073377.9 ENSMUSG00000073377 ENSMUST00000168379 AU016765 lincRNA Interval_54742 chr14 74602182 74603012 + 0 NA Intergenic Intergenic -38243 ENSMUSG00000034997.5 ENSMUSG00000034997 ENSMUST00000036653 Htr2a protein_coding Interval_137372 chr6 71758172 71758410 + 0 NA intron (ENSMUSG00000052852.8, intron 2 of 8) protein_coding-intron (ENSMUSG00000052852.8, intron 2 of 6) -32377 ENSMUSG00000108802.1 ENSMUSG00000108802 ENSMUST00000206120 Gm44769 TEC Interval_141169 chr6 125379892 125380882 + 0 NA exon (ENSMUSG00000038167.6, exon 1 of 17) protein_coding-exon (ENSMUSG00000038167.6, exon 1 of 17) 406 ENSMUSG00000038167.6 ENSMUSG00000038167 ENSMUST00000042647 Plekhg6 protein_coding Interval_715 chr1 10114731 10115118 + 0 NA promoter-TSS (ENSMUSG00000056763.16) protein_coding-promoter-TSS (ENSMUSG00000056763.16) 26777 ENSMUSG00000067851.11 ENSMUSG00000067851 ENSMUST00000186720 Arfgef1 protein_coding Interval_50311 chr14 11776742 11777304 + 0 NA intron (ENSMUSG00000021745.14, intron 2 of 3) protein_coding-intron (ENSMUSG00000021745.14, intron 2 of 29) 9080 ENSMUSG00000114310.1 ENSMUSG00000114310 ENSMUST00000225152 Gm48602 TEC Interval_155774 chr8 37305390 37305678 + 0 NA Intergenic Intergenic 12044 ENSMUSG00000065277.1 ENSMUSG00000065277 ENSMUST00000083343 Gm25126 snRNA Interval_84945 chr19 19575024 19575365 + 0 NA Intergenic Intergenic 298723 ENSMUSG00000118109.1 ENSMUSG00000118109 ENSMUST00000237424 Gm41815 lincRNA Interval_40575 chr12 105803450 105805078 + 0 NA intron (ENSMUSG00000021111.15, intron 3 of 7) protein_coding-intron (ENSMUSG00000021111.15, intron 3 of 22) -24803 ENSMUSG00000021111.15 ENSMUSG00000021111 ENSMUST00000172089 Papola protein_coding Interval_115732 chr4 103146304 103146626 + 0 NA intron (ENSMUSG00000028522.16, intron 9 of 14) protein_coding-intron (ENSMUSG00000028522.16, intron 8 of 13) 27075 ENSMUSG00000028522.16 ENSMUSG00000028522 ENSMUST00000128536 Mier1 protein_coding Interval_162330 chr8 127160744 127160965 + 0 NA intron (ENSMUSG00000025812.18, intron 2 of 3) protein_coding-intron (ENSMUSG00000025812.18, intron 1 of 23) -10550 ENSMUSG00000025812.18 ENSMUSG00000025812 ENSMUST00000159940 Pard3 protein_coding Interval_129197 chr5 118131044 118131765 + 0 NA intron (ENSMUSG00000032867.8, intron 2 of 7) protein_coding-intron (ENSMUSG00000032867.8, intron 2 of 10) 17490 ENSMUSG00000088293.1 ENSMUSG00000088293 ENSMUST00000157668 Gm26411 snRNA Interval_94721 chr2 93695729 93697026 + 0 NA intron (ENSMUSG00000027198.16, intron 2 of 2) protein_coding-intron (ENSMUSG00000027198.16, intron 13 of 13) 53989 ENSMUSG00000040310.12 ENSMUSG00000040310 ENSMUST00000111254 Alx4 protein_coding Interval_84769 chr19 16434997 16437133 + 0 NA exon (ENSMUSG00000024697.4, exon 1 of 7) protein_coding-exon (ENSMUSG00000024697.4, exon 1 of 7) -3235 ENSMUSG00000024697.4 ENSMUSG00000024697 ENSMUST00000237350 Gna14 protein_coding Interval_107087 chr3 103415320 103416217 + 0 NA Intergenic Intergenic -11669 ENSMUSG00000065789.1 ENSMUSG00000065789 ENSMUST00000083855 Gm25869 snRNA Interval_94078 chr2 83692064 83694626 + 0 NA Intergenic Intergenic 7771 ENSMUSG00000085450.1 ENSMUSG00000085450 ENSMUST00000122851 Gm13686 antisense Interval_116111 chr4 107801450 107804228 + 0 NA promoter-TSS (ENSMUSG00000087200.1) bidirectional_promoter_lncRNA-promoter-TSS (ENSMUSG00000087200.1) -775 ENSMUSG00000087200.1 ENSMUSG00000087200 ENSMUST00000125464 Lrp8os3 bidirectional_promoter_lncRNA Interval_519 chr1 6916278 6917678 + 0 NA exon (ENSMUSG00000102135.1, exon 1 of 2) processed_pseudogene-exon (ENSMUSG00000102135.1, exon 1 of 2) 419 ENSMUSG00000102135.1 ENSMUSG00000102135 ENSMUST00000194605 Gm37108 processed_pseudogene Interval_161043 chr8 117112043 117112573 + 0 NA intron (ENSMUSG00000031845.15, intron 5 of 11) protein_coding-intron (ENSMUSG00000031845.15, intron 5 of 10) -13027 ENSMUSG00000093446.1 ENSMUSG00000093446 ENSMUST00000176943 Gm20694 processed_pseudogene Interval_41263 chr12 112237216 112237682 + 0 NA Intergenic Intergenic -32296 ENSMUSG00000113282.1 ENSMUSG00000113282 ENSMUST00000220716 Gm20368 processed_pseudogene Interval_34828 chr12 12323308 12324800 + 0 NA intron (ENSMUSG00000020589.17, intron 3 of 12) protein_coding-intron (ENSMUSG00000020589.17, intron 2 of 11) 61871 ENSMUSG00000020589.17 ENSMUSG00000020589 ENSMUST00000222357 Fam49a protein_coding Interval_42003 chr13 6396604 6397276 + 0 NA intron (ENSMUSG00000101540.2, intron 1 of 1) lincRNA-intron (ENSMUSG00000101540.2, intron 1 of 1) 768 ENSMUSG00000101540.2 ENSMUSG00000101540 ENSMUST00000220779 Gm28465 lincRNA Interval_81996 chr18 67000509 67001001 + 0 NA Intergenic Intergenic 26590 ENSMUSG00000117798.1 ENSMUSG00000117798 ENSMUST00000237275 Gm50164 lincRNA Interval_172498 chrX 21649106 21649422 + 0 NA Intergenic Intergenic -30754 ENSMUSG00000081475.1 ENSMUSG00000081475 ENSMUST00000117458 Gm14558 processed_pseudogene Interval_79200 chr18 25607104 25607620 + 0 NA intron (ENSMUSG00000024268.16, intron 2 of 5) protein_coding-intron (ENSMUSG00000024268.16, intron 2 of 12) -8908 ENSMUSG00000084537.1 ENSMUSG00000084537 ENSMUST00000122588 Gm25845 misc_RNA Interval_19887 chr10 110931107 110932335 + 0 NA promoter-TSS (ENSMUSG00000020186.7) protein_coding-promoter-TSS (ENSMUSG00000020186.7) 11531 ENSMUSG00000020186.7 ENSMUSG00000020186 ENSMUST00000220301 Csrp2 protein_coding Interval_31103 chr11 98148974 98150695 + 0 NA promoter-TSS (ENSMUSG00000020883.18) protein_coding-promoter-TSS (ENSMUSG00000020883.18) 569 ENSMUSG00000020883.18 ENSMUSG00000020883 ENSMUST00000148473 Fbxl20 protein_coding Interval_160056 chr8 106070906 106071291 + 0 NA TTS (ENSMUSG00000093345.2) misc_RNA-TTS (ENSMUSG00000093345.2) 776 ENSMUSG00000093345.2 ENSMUSG00000093345 ENSMUST00000175604 Gm27956 misc_RNA Interval_18499 chr10 86753392 86754425 + 0 NA intron (ENSMUSG00000044937.15, intron 1 of 3) protein_coding-intron (ENSMUSG00000044937.15, intron 10 of 15) -10064 ENSMUSG00000112743.1 ENSMUSG00000112743 ENSMUST00000218802 Gm49358 protein_coding Interval_130617 chr5 129235431 129235787 + 0 NA Intergenic Intergenic -107092 ENSMUSG00000060419.8 ENSMUSG00000060419 ENSMUST00000140155 Rps16-ps2 processed_pseudogene Interval_10820 chr1 175608100 175608847 + 0 NA intron (ENSMUSG00000026526.14, intron 6 of 9) protein_coding-intron (ENSMUSG00000026526.14, intron 6 of 9) 1240 ENSMUSG00000026526.14 ENSMUSG00000026526 ENSMUST00000154956 Fh1 protein_coding Interval_171990 chr9 123244058 123244576 + 0 NA Intergenic Intergenic 16447 ENSMUSG00000054871.5 ENSMUSG00000054871 ENSMUST00000068140 Tmem158 protein_coding Interval_95014 chr2 103063147 103063363 + 0 NA intron (ENSMUSG00000010914.10, intron 1 of 4) protein_coding-intron (ENSMUSG00000010914.10, intron 1 of 10) 10080 ENSMUSG00000010914.10 ENSMUSG00000010914 ENSMUST00000111183 Pdhx protein_coding Interval_10477 chr1 171220936 171223039 + 0 NA exon (ENSMUSG00000005674.9, exon 2 of 10) protein_coding-exon (ENSMUSG00000005674.9, exon 2 of 10) 445 ENSMUSG00000005674.9 ENSMUSG00000005674 ENSMUST00000130529 Tomm40l protein_coding Interval_170876 chr9 111467406 111469403 + 0 NA exon (ENSMUSG00000032500.10, exon 2 of 5) protein_coding-exon (ENSMUSG00000032500.10, exon 2 of 5) 29323 ENSMUSG00000032500.10 ENSMUSG00000032500 ENSMUST00000111879 Dclk3 protein_coding Interval_99964 chr2 166140823 166142120 + 0 NA intron (ENSMUSG00000006800.14, intron 1 of 20) protein_coding-intron (ENSMUSG00000006800.14, intron 1 of 20) 14192 ENSMUSG00000006800.14 ENSMUSG00000006800 ENSMUST00000133395 Sulf2 protein_coding Interval_61975 chr15 85598859 85599299 + 0 NA Intergenic Intergenic 18827 ENSMUSG00000097209.2 ENSMUSG00000097209 ENSMUST00000180441 AU022754 antisense Interval_99976 chr2 166203674 166204872 + 0 NA Intergenic Intergenic 4354 ENSMUSG00000085046.1 ENSMUSG00000085046 ENSMUST00000129407 Gm11467 lincRNA Interval_67300 chr16 45726208 45726443 + 0 NA Intergenic Intergenic -1717 ENSMUSG00000022658.10 ENSMUSG00000022658 ENSMUST00000096057 Tagln3 protein_coding Interval_24302 chr11 32212860 32213767 + 0 NA TTS (ENSMUSG00000020282.18) protein_coding-TTS (ENSMUSG00000020282.18) 7855 ENSMUSG00000040767.10 ENSMUSG00000040767 ENSMUST00000125837 Snrnp25 protein_coding Interval_35353 chr12 20955080 20955673 + 0 NA Intergenic Intergenic -34114 ENSMUSG00000069755.5 ENSMUSG00000069755 ENSMUST00000208744 Zfp125 transcribed_unprocessed_pseudogene Interval_28074 chr11 72648131 72648367 + 0 NA promoter-TSS (ENSMUSG00000092725.1) miRNA-promoter-TSS (ENSMUSG00000092725.1) -676 ENSMUSG00000092725.1 ENSMUSG00000092725 ENSMUST00000174984 Gm25678 miRNA Interval_153114 chr7 141440586 141440985 + 0 NA promoter-TSS (ENSMUSG00000025507.13) protein_coding-promoter-TSS (ENSMUSG00000025507.13) 2535 ENSMUSG00000025507.13 ENSMUSG00000025507 ENSMUST00000130878 Pidd1 protein_coding Interval_84354 chr19 10333426 10334130 + 0 NA Intergenic Intergenic 42852 ENSMUSG00000118330.1 ENSMUSG00000118330 ENSMUST00000237496 Gm30042 antisense Interval_115164 chr4 92710332 92710649 + 0 NA Intergenic Intergenic 156092 ENSMUSG00000088914.1 ENSMUSG00000088914 ENSMUST00000158289 Gm22605 snRNA Interval_48958 chr13 105832031 105832279 + 0 NA Intergenic Intergenic 1523 ENSMUSG00000114671.1 ENSMUSG00000114671 ENSMUST00000225365 Gm48211 processed_pseudogene Interval_156602 chr8 54281827 54282044 + 0 NA Intergenic Intergenic 204156 ENSMUSG00000031520.6 ENSMUSG00000031520 ENSMUST00000210831 Vegfc protein_coding Interval_28672 chr11 77685613 77688061 + 0 NA promoter-TSS (ENSMUSG00000037857.16) protein_coding-promoter-TSS (ENSMUSG00000037857.16) 665 ENSMUSG00000037857.16 ENSMUSG00000037857 ENSMUST00000155238 Nufip2 protein_coding Interval_55446 chr14 87415780 87418068 + 0 NA intron (ENSMUSG00000022019.16, intron 1 of 11) protein_coding-intron (ENSMUSG00000022019.16, intron 1 of 13) -11426 ENSMUSG00000115564.1 ENSMUSG00000115564 ENSMUST00000226140 Gm49199 TEC Interval_5993 chr1 93770660 93771413 + 0 NA intron (ENSMUSG00000026280.17, intron 3 of 5) protein_coding-intron (ENSMUSG00000026280.17, intron 3 of 12) -13307 ENSMUSG00000026280.17 ENSMUSG00000026280 ENSMUST00000185754 Atg4b protein_coding Interval_95195 chr2 104683924 104684891 + 0 NA promoter-TSS (ENSMUSG00000027175.10) protein_coding-promoter-TSS (ENSMUSG00000027175.10) 22060 ENSMUSG00000027175.10 ENSMUSG00000027175 ENSMUST00000132600 Tcp11l1 protein_coding Interval_34135 chr11 120837586 120838251 + 0 NA intron (ENSMUSG00000048445.6, intron 5 of 5) protein_coding-intron (ENSMUSG00000048445.6, intron 18 of 18) 6889 ENSMUSG00000087638.1 ENSMUSG00000087638 ENSMUST00000138256 Gm11773 antisense Interval_108018 chr3 120009619 120009978 + 0 NA Intergenic Intergenic 41067 ENSMUSG00000104726.1 ENSMUSG00000104726 ENSMUST00000195974 Gm18384 processed_pseudogene Interval_167763 chr9 72594203 72595242 + 0 NA promoter-TSS (ENSMUSG00000102672.1) TEC-promoter-TSS (ENSMUSG00000102672.1) -201 ENSMUSG00000102672.1 ENSMUSG00000102672 ENSMUST00000192251 Gm37105 TEC Interval_109106 chr3 135832373 135832659 + 0 NA intron (ENSMUSG00000053897.15, intron 2 of 8) protein_coding-intron (ENSMUSG00000053897.15, intron 1 of 7) 6859 ENSMUSG00000053897.15 ENSMUSG00000053897 ENSMUST00000133810 Slc39a8 protein_coding Interval_97273 chr2 132825630 132826324 + 0 NA intron (ENSMUSG00000027353.14, intron 7 of 17) protein_coding-intron (ENSMUSG00000027353.14, intron 8 of 18) 9753 ENSMUSG00000027353.14 ENSMUSG00000027353 ENSMUST00000135685 Mcm8 protein_coding Interval_9941 chr1 164270944 164271283 + 0 NA Intergenic Intergenic -4472 ENSMUSG00000026578.6 ENSMUSG00000026578 ENSMUST00000027867 Ccdc181 protein_coding Interval_57863 chr15 23428637 23429086 + 0 NA intron (ENSMUSG00000040420.15, intron 7 of 8) protein_coding-intron (ENSMUSG00000040420.15, intron 8 of 9) -14404 ENSMUSG00000115560.1 ENSMUSG00000115560 ENSMUST00000226326 Gm49191 antisense Interval_8197 chr1 136435246 136435439 + 0 NA intron (ENSMUSG00000026404.12, intron 7 of 7) protein_coding-intron (ENSMUSG00000026404.12, intron 7 of 7) 2940 ENSMUSG00000026404.12 ENSMUSG00000026404 ENSMUST00000149783 Ddx59 protein_coding Interval_160396 chr8 108930101 108930838 + 0 NA intron (ENSMUSG00000038872.10, intron 11 of 15) protein_coding-intron (ENSMUSG00000038872.10, intron 5 of 9) -6391 ENSMUSG00000093241.1 ENSMUSG00000093241 ENSMUST00000175500 Mir3108 miRNA Interval_38323 chr12 77190802 77191217 + 0 NA Intergenic Intergenic 47654 ENSMUSG00000112150.1 ENSMUSG00000112150 ENSMUST00000219513 9530018F02Rik bidirectional_promoter_lncRNA Interval_27201 chr11 64050812 64051012 + 0 NA intron (ENSMUSG00000042148.8, intron 3 of 6) protein_coding-intron (ENSMUSG00000042148.8, intron 3 of 6) 28556 ENSMUSG00000042148.8 ENSMUSG00000042148 ENSMUST00000125702 Cox10 protein_coding Interval_124407 chr5 45599069 45599598 + 0 NA intron (ENSMUSG00000015879.8, intron 1 of 15) protein_coding-intron (ENSMUSG00000015879.8, intron 1 of 15) -40048 ENSMUSG00000097825.5 ENSMUSG00000097825 ENSMUST00000200144 9630001P10Rik antisense Interval_59716 chr15 58869716 58870260 + 0 NA Intergenic Intergenic -2686 ENSMUSG00000037085.8 ENSMUSG00000037085 ENSMUST00000036937 Trmt12 protein_coding Interval_91976 chr2 52114108 52114339 + 0 NA intron (ENSMUSG00000036202.16, intron 1 of 5) protein_coding-intron (ENSMUSG00000036202.16, intron 30 of 35) 2090 ENSMUSG00000036202.16 ENSMUSG00000036202 ENSMUST00000152178 Rif1 protein_coding Interval_78271 chr18 11097262 11097554 + 0 NA Intergenic Intergenic 44364 ENSMUSG00000005836.10 ENSMUSG00000005836 ENSMUST00000234971 Gata6 protein_coding Interval_159949 chr8 105359376 105359920 + 0 NA intron (ENSMUSG00000014786.8, intron 12 of 15) protein_coding-intron (ENSMUSG00000014786.8, intron 12 of 15) 4186 ENSMUSG00000014786.8 ENSMUSG00000014786 ENSMUST00000212772 Slc9a5 protein_coding Interval_144499 chr7 25479676 25479936 + 0 NA intron (ENSMUSG00000053714.8, intron 4 of 6) antisense-intron (ENSMUSG00000053714.8, intron 4 of 6) -2223 ENSMUSG00000074272.10 ENSMUSG00000074272 ENSMUST00000206981 Ceacam1 protein_coding Interval_90743 chr2 32236055 32237799 + 0 NA promoter-TSS (ENSMUSG00000039254.16) protein_coding-promoter-TSS (ENSMUSG00000039254.16) -545 ENSMUSG00000086216.1 ENSMUSG00000086216 ENSMUST00000128298 Gm13610 antisense Interval_303 chr1 3301417 3301675 + 0 NA intron (ENSMUSG00000051951.5, intron 2 of 2) protein_coding-intron (ENSMUSG00000051951.5, intron 2 of 2) 48789 ENSMUSG00000102851.1 ENSMUSG00000102851 ENSMUST00000192857 Gm18956 processed_pseudogene Interval_149994 chr7 104299040 104300741 + 0 NA TTS (ENSMUSG00000066258.13) protein_coding-TTS (ENSMUSG00000066258.13) 1144 ENSMUSG00000066258.13 ENSMUSG00000066258 ENSMUST00000134564 Trim12a protein_coding Interval_26527 chr11 58401965 58403048 + 0 NA Intergenic Intergenic -5991 ENSMUSG00000082181.1 ENSMUSG00000082181 ENSMUST00000119517 Gm12252 processed_pseudogene Interval_38667 chr12 80933918 80934414 + 0 NA Intergenic Intergenic -9717 ENSMUSG00000101912.1 ENSMUSG00000101912 ENSMUST00000190431 1700052I22Rik lincRNA Interval_136799 chr6 60481781 60482188 + 0 NA Intergenic Intergenic -7972 ENSMUSG00000108192.1 ENSMUSG00000108192 ENSMUST00000203151 Gm44410 lincRNA Interval_70974 chr17 16950642 16952198 + 0 NA promoter-TSS (ENSMUSG00000060149.7) lincRNA-promoter-TSS (ENSMUSG00000060149.7) -132 ENSMUSG00000060149.7 ENSMUSG00000060149 ENSMUST00000071374 BC002059 lincRNA Interval_137494 chr6 72753660 72754464 + 0 NA intron (ENSMUSG00000055799.13, intron 2 of 5) protein_coding-intron (ENSMUSG00000055799.13, intron 3 of 11) -2148 ENSMUSG00000104501.1 ENSMUSG00000104501 ENSMUST00000193564 Gm37736 TEC Interval_69231 chr16 91561680 91562682 + 0 NA intron (ENSMUSG00000022965.8, intron 2 of 2) protein_coding-intron (ENSMUSG00000022965.8, intron 6 of 6) 858 ENSMUSG00000022965.8 ENSMUSG00000022965 ENSMUST00000130404 Ifngr2 protein_coding Interval_74645 chr17 54254418 54254620 + 0 NA Intergenic Intergenic 31006 ENSMUSG00000102572.1 ENSMUSG00000102572 ENSMUST00000193122 Gm37966 TEC Interval_333 chr1 4149579 4151375 + 0 NA intron (ENSMUSG00000025900.13, intron 19 of 29) protein_coding-intron (ENSMUSG00000025900.13, intron 19 of 29) 110042 ENSMUSG00000102948.1 ENSMUSG00000102948 ENSMUST00000195384 Gm6101 processed_pseudogene Interval_142385 chr6 141322866 141323190 + 0 NA intron (ENSMUSG00000041741.10, intron 1 of 5) protein_coding-intron (ENSMUSG00000041741.10, intron 1 of 15) -17525 ENSMUSG00000107456.1 ENSMUSG00000107456 ENSMUST00000203920 Gm10400 TEC Interval_108172 chr3 122144325 122144537 + 0 NA intron (ENSMUSG00000028125.14, intron 9 of 26) protein_coding-intron (ENSMUSG00000028125.14, intron 32 of 49) 8188 ENSMUSG00000105351.1 ENSMUSG00000105351 ENSMUST00000198223 Gm43157 processed_pseudogene Interval_72178 chr17 28447711 28448428 + 0 NA TTS (ENSMUSG00000088022.1) misc_RNA-TTS (ENSMUSG00000088022.1) 1208 ENSMUSG00000088022.1 ENSMUSG00000088022 ENSMUST00000157397 Gm49799 misc_RNA Interval_173779 chrX 103997852 103998188 + 0 NA Intergenic Intergenic 3317 ENSMUSG00000080825.1 ENSMUSG00000080825 ENSMUST00000117636 Gm14892 processed_pseudogene Interval_56801 chr14 122171177 122172437 + 0 NA Intergenic Intergenic 50254 ENSMUSG00000090674.1 ENSMUSG00000090674 ENSMUST00000166043 Gm17082 processed_pseudogene Interval_55094 chr14 77961231 77961596 + 0 NA intron (ENSMUSG00000022014.15, intron 6 of 6) protein_coding-intron (ENSMUSG00000022014.15, intron 6 of 11) 57006 ENSMUSG00000022014.15 ENSMUSG00000022014 ENSMUST00000227903 Epsti1 protein_coding Interval_81030 chr18 53157622 53158467 + 0 NA Intergenic Intergenic -18345 ENSMUSG00000034484.8 ENSMUSG00000034484 ENSMUST00000236111 Snx2 protein_coding Interval_19323 chr10 96697717 96698701 + 0 NA Intergenic Intergenic -13598 ENSMUSG00000112362.1 ENSMUSG00000112362 ENSMUST00000219424 Gm48507 processed_pseudogene Interval_102673 chr3 29541500 29542070 + 0 NA intron (ENSMUSG00000063600.14, intron 5 of 5) protein_coding-intron (ENSMUSG00000063600.14, intron 5 of 12) -94959 ENSMUSG00000098315.1 ENSMUSG00000098315 ENSMUST00000184317 Mir21b miRNA Interval_29519 chr11 84635120 84635971 + 0 NA Intergenic Intergenic 84887 ENSMUSG00000085044.1 ENSMUSG00000085044 ENSMUST00000150735 1700109G15Rik lincRNA Interval_99955 chr2 166082325 166082938 + 0 NA exon (ENSMUSG00000006800.14, exon 11 of 21) protein_coding-exon (ENSMUSG00000006800.14, exon 11 of 21) 34713 ENSMUSG00000027678.17 ENSMUSG00000027678 ENSMUST00000139394 Ncoa3 protein_coding Interval_47667 chr13 90960059 90960894 + 0 NA intron (ENSMUSG00000021619.6, intron 4 of 6) protein_coding-intron (ENSMUSG00000021619.6, intron 5 of 7) 37259 ENSMUSG00000049517.8 ENSMUSG00000049517 ENSMUST00000224430 Rps23 protein_coding Interval_172125 chrX 7774563 7777270 + 0 NA TTS (ENSMUSG00000000134.17) protein_coding-TTS (ENSMUSG00000000134.17) 11973 ENSMUSG00000000134.17 ENSMUSG00000000134 ENSMUST00000133456 Tfe3 protein_coding Interval_108095 chr3 121471611 121471865 + 0 NA intron (ENSMUSG00000039865.8, intron 12 of 14) protein_coding-intron (ENSMUSG00000039865.8, intron 12 of 14) 14625 ENSMUSG00000053931.11 ENSMUSG00000053931 ENSMUST00000199499 Cnn3 protein_coding Interval_80773 chr18 46968217 46969912 + 0 NA intron (ENSMUSG00000042705.9, intron 4 of 5) protein_coding-intron (ENSMUSG00000042705.9, intron 4 of 6) 10203 ENSMUSG00000042705.9 ENSMUSG00000042705 ENSMUST00000234664 Commd10 protein_coding Interval_68262 chr16 71493928 71494563 + 0 NA Intergenic Intergenic -169543 ENSMUSG00000065924.1 ENSMUSG00000065924 ENSMUST00000083990 Gm22797 snoRNA Interval_9709 chr1 161195200 161196690 + 0 NA intron (ENSMUSG00000102817.2, intron 6 of 25) transcribed_unprocessed_pseudogene-intron (ENSMUSG00000102817.2, intron 6 of 25) -4864 ENSMUSG00000102817.2 ENSMUSG00000102817 ENSMUST00000212885 Gm6185 transcribed_unprocessed_pseudogene Interval_80439 chr18 42241025 42241642 + 0 NA intron (ENSMUSG00000024493.9, intron 11 of 14) protein_coding-intron (ENSMUSG00000024493.9, intron 10 of 31) -11065 ENSMUSG00000096699.1 ENSMUSG00000096699 ENSMUST00000091925 Rps19-ps4 processed_pseudogene Interval_103498 chr3 45217160 45217485 + 0 NA Intergenic Intergenic 55245 ENSMUSG00000103082.1 ENSMUSG00000103082 ENSMUST00000191710 Gm38124 TEC Interval_153431 chr7 144731197 144732461 + 0 NA intron (ENSMUSG00000031075.19, intron 1 of 6) protein_coding-intron (ENSMUSG00000031075.19, intron 1 of 24) 6737 ENSMUSG00000031075.19 ENSMUSG00000031075 ENSMUST00000131731 Ano1 protein_coding Interval_22808 chr11 16073128 16073366 + 0 NA Intergenic Intergenic 35454 ENSMUSG00000104323.1 ENSMUSG00000104323 ENSMUST00000193500 Gm37319 TEC Interval_127261 chr5 101949625 101950393 + 0 NA intron (ENSMUSG00000043940.15, intron 6 of 64) protein_coding-intron (ENSMUSG00000043940.15, intron 9 of 66) -6598 ENSMUSG00000106451.1 ENSMUSG00000106451 ENSMUST00000196920 Gm42934 TEC Interval_69959 chr17 3516041 3516964 + 0 NA TTS (ENSMUSG00000023800.15) protein_coding-TTS (ENSMUSG00000023800.15) -16052 ENSMUSG00000091530.2 ENSMUSG00000091530 ENSMUST00000168560 Cldn20 protein_coding Interval_135006 chr6 34504036 34505409 + 0 NA exon (ENSMUSG00000038871.5, exon 3 of 3) protein_coding-exon (ENSMUSG00000038871.5, exon 3 of 3) 27580 ENSMUSG00000038871.5 ENSMUSG00000038871 ENSMUST00000149131 Bpgm protein_coding Interval_15226 chr10 43495141 43495479 + 0 NA intron (ENSMUSG00000038214.15, intron 3 of 3) protein_coding-intron (ENSMUSG00000038214.15, intron 3 of 4) 10076 ENSMUSG00000038214.15 ENSMUSG00000038214 ENSMUST00000214116 Bend3 protein_coding Interval_116632 chr4 116176129 116178240 + 0 NA intron (ENSMUSG00000085920.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000085920.1, intron 1 of 1) 938 ENSMUSG00000085920.1 ENSMUSG00000085920 ENSMUST00000150216 Gm12951 lincRNA Interval_155532 chr8 34135107 34135501 + 0 NA TTS (ENSMUSG00000031513.8) protein_coding-TTS (ENSMUSG00000031513.8) 11729 ENSMUSG00000031513.8 ENSMUSG00000031513 ENSMUST00000033910 Leprotl1 protein_coding Interval_112320 chr4 40416889 40417083 + 0 NA Intergenic Intergenic 42047 ENSMUSG00000089585.1 ENSMUSG00000089585 ENSMUST00000158960 Gm23338 snoRNA Interval_174711 chrX 163935975 163937095 + 0 NA exon (ENSMUSG00000031370.12, exon 11 of 11) protein_coding-exon (ENSMUSG00000031370.12, exon 11 of 11) 22017 ENSMUSG00000031370.12 ENSMUSG00000031370 ENSMUST00000127370 Zrsr2 protein_coding Interval_15619 chr10 52342847 52344172 + 0 NA exon (ENSMUSG00000112550.1, exon 1 of 1) processed_pseudogene-exon (ENSMUSG00000112550.1, exon 1 of 1) 148 ENSMUSG00000112550.1 ENSMUSG00000112550 ENSMUST00000218299 Gm6627 processed_pseudogene Interval_27964 chr11 71604937 71605459 + 0 NA Intergenic Intergenic -31660 ENSMUSG00000111450.1 ENSMUSG00000111450 ENSMUST00000215428 Gm33351 lincRNA Interval_86018 chr19 34953884 34954497 + 0 NA intron (ENSMUSG00000024795.11, intron 13 of 23) protein_coding-intron (ENSMUSG00000024795.11, intron 21 of 31) -11206 ENSMUSG00000089151.1 ENSMUSG00000089151 ENSMUST00000158526 Mir1950 miRNA Interval_142447 chr6 142371726 142372313 + 0 NA intron (ENSMUSG00000030243.16, intron 6 of 14) protein_coding-intron (ENSMUSG00000030243.16, intron 6 of 15) 14990 ENSMUSG00000030243.16 ENSMUSG00000030243 ENSMUST00000128082 Recql protein_coding Interval_47206 chr13 78067350 78067526 + 0 NA intron (ENSMUSG00000064138.14, intron 10 of 10) protein_coding-intron (ENSMUSG00000064138.14, intron 9 of 9) -11950 ENSMUSG00000114812.1 ENSMUSG00000114812 ENSMUST00000224621 Gm48254 processed_pseudogene Interval_82236 chr18 69479435 69479748 + 0 NA intron (ENSMUSG00000053477.17, intron 5 of 6) protein_coding-intron (ENSMUSG00000053477.17, intron 6 of 20) -42859 ENSMUSG00000053477.17 ENSMUSG00000053477 ENSMUST00000136019 Tcf4 protein_coding Interval_121128 chr4 153308316 153308921 + 0 NA Intergenic Intergenic 90442 ENSMUSG00000087454.1 ENSMUSG00000087454 ENSMUST00000126141 Gm13174 lincRNA Interval_91135 chr2 35370577 35371188 + 0 NA Intergenic Intergenic -3153 ENSMUSG00000026882.1 ENSMUSG00000026882 ENSMUST00000028243 4930568D16Rik protein_coding Interval_169390 chr9 96869904 96870875 + 0 NA intron (ENSMUSG00000043587.15, intron 1 of 6) protein_coding-intron (ENSMUSG00000043587.15, intron 1 of 5) 19044 ENSMUSG00000043587.15 ENSMUSG00000043587 ENSMUST00000185561 Pxylp1 protein_coding Interval_91222 chr2 36038799 36040319 + 0 NA intron (ENSMUSG00000026895.7, intron 3 of 3) protein_coding-intron (ENSMUSG00000026895.7, intron 3 of 3) 9847 ENSMUSG00000026895.7 ENSMUSG00000026895 ENSMUST00000070112 Ndufa8 protein_coding Interval_117271 chr4 121178094 121178376 + 0 NA intron (ENSMUSG00000049878.13, intron 2 of 5) protein_coding-intron (ENSMUSG00000049878.13, intron 4 of 7) 36849 ENSMUSG00000049878.13 ENSMUSG00000049878 ENSMUST00000222814 Rlf protein_coding Interval_67454 chr16 48878397 48878898 + 0 NA Intergenic Intergenic 6026 ENSMUSG00000022651.6 ENSMUSG00000022651 ENSMUST00000065666 Retnlg protein_coding Interval_29241 chr11 82011265 82012430 + 0 NA intron (ENSMUSG00000109297.1, intron 1 of 5) lincRNA-intron (ENSMUSG00000109297.1, intron 1 of 5) 8120 ENSMUSG00000109297.1 ENSMUSG00000109297 ENSMUST00000207942 Gm31522 lincRNA Interval_122159 chr5 18433187 18433398 + 0 NA Intergenic Intergenic 56902 ENSMUSG00000104718.1 ENSMUSG00000104718 ENSMUST00000199456 Gm31752 lincRNA Interval_22027 chr11 5855517 5856118 + 0 NA Intergenic Intergenic -13331 ENSMUSG00000020473.13 ENSMUSG00000020473 ENSMUST00000138103 Aebp1 protein_coding Interval_38347 chr12 77624235 77624512 + 0 NA exon (ENSMUSG00000112003.1, exon 1 of 1) processed_pseudogene-exon (ENSMUSG00000112003.1, exon 1 of 1) 636 ENSMUSG00000112003.1 ENSMUSG00000112003 ENSMUST00000219894 Gm4864 processed_pseudogene Interval_115338 chr4 97153603 97153955 + 0 NA Intergenic Intergenic 236759 ENSMUSG00000098261.1 ENSMUSG00000098261 ENSMUST00000184022 Gm27521 snRNA Interval_124879 chr5 58736581 58737059 + 0 NA Intergenic Intergenic 264173 ENSMUSG00000106509.1 ENSMUSG00000106509 ENSMUST00000198671 Gm43394 processed_pseudogene Interval_11112 chr1 179457135 179457850 + 0 NA intron (ENSMUSG00000055067.15, intron 1 of 11) protein_coding-intron (ENSMUSG00000055067.15, intron 1 of 5) 60513 ENSMUSG00000055067.15 ENSMUSG00000055067 ENSMUST00000194237 Smyd3 protein_coding Interval_127058 chr5 100007002 100007454 + 0 NA Intergenic Intergenic -28290 ENSMUSG00000000568.15 ENSMUSG00000000568 ENSMUST00000170912 Hnrnpd protein_coding Interval_91169 chr2 35640849 35641055 + 0 NA intron (ENSMUSG00000026883.17, intron 1 of 15) protein_coding-intron (ENSMUSG00000026883.17, intron 1 of 15) -69375 ENSMUSG00000026883.17 ENSMUSG00000026883 ENSMUST00000156669 Dab2ip protein_coding Interval_140121 chr6 114434222 114434442 + 0 NA intron (ENSMUSG00000053004.9, intron 2 of 2) protein_coding-intron (ENSMUSG00000053004.9, intron 2 of 2) 30666 ENSMUSG00000053004.9 ENSMUSG00000053004 ENSMUST00000160780 Hrh1 protein_coding Interval_42181 chr13 9632550 9633225 + 0 NA intron (ENSMUSG00000048264.16, intron 8 of 15) protein_coding-intron (ENSMUSG00000048264.16, intron 31 of 38) 4202 ENSMUSG00000113355.1 ENSMUSG00000113355 ENSMUST00000223052 Gm48888 TEC Interval_3024 chr1 52293110 52293896 + 0 NA Intergenic Intergenic -4408 ENSMUSG00000099648.1 ENSMUSG00000099648 ENSMUST00000185256 Gm5975 processed_pseudogene Interval_10928 chr1 177110852 177111156 + 0 NA intron (ENSMUSG00000019699.16, intron 2 of 12) protein_coding-intron (ENSMUSG00000019699.16, intron 2 of 12) 24449 ENSMUSG00000103163.1 ENSMUSG00000103163 ENSMUST00000194121 Gm38146 TEC Interval_105747 chr3 89123120 89123549 + 0 NA Intergenic Intergenic 6610 ENSMUSG00000105654.1 ENSMUSG00000105654 ENSMUST00000196011 Gm29704 processed_pseudogene Interval_79708 chr18 34651087 34652835 + 0 NA promoter-TSS (ENSMUSG00000024370.17) protein_coding-promoter-TSS (ENSMUSG00000024370.17) 4561 ENSMUSG00000064857.1 ENSMUSG00000064857 ENSMUST00000082923 n-R5s25 rRNA Interval_136311 chr6 52870422 52871915 + 0 NA intron (ENSMUSG00000063568.11, intron 2 of 4) protein_coding-intron (ENSMUSG00000063568.11, intron 2 of 4) -27467 ENSMUSG00000081872.1 ENSMUSG00000081872 ENSMUST00000119248 Gm15572 processed_pseudogene Interval_14859 chr10 40576814 40577710 + 0 NA intron (ENSMUSG00000019834.15, intron 2 of 7) protein_coding-intron (ENSMUSG00000019834.15, intron 2 of 7) 6926 ENSMUSG00000019834.15 ENSMUSG00000019834 ENSMUST00000019978 Slc22a16 protein_coding Interval_33164 chr11 114858512 114859559 + 0 NA intron (ENSMUSG00000051043.16, intron 1 of 1) protein_coding-intron (ENSMUSG00000051043.16, intron 1 of 3) 7495 ENSMUSG00000051043.16 ENSMUSG00000051043 ENSMUST00000152314 Gprc5c protein_coding Interval_170872 chr9 111427800 111428541 + 0 NA Intergenic Intergenic -10911 ENSMUSG00000032500.10 ENSMUSG00000032500 ENSMUST00000111879 Dclk3 protein_coding Interval_83593 chr18 90399005 90399501 + 0 NA Intergenic Intergenic 56767 ENSMUSG00000118372.1 ENSMUSG00000118372 ENSMUST00000236347 Gm50434 processed_pseudogene Interval_138409 chr6 87952509 87953056 + 0 NA Intergenic Intergenic -3905 ENSMUSG00000068689.8 ENSMUSG00000068689 ENSMUST00000161787 Rps19-ps9 processed_pseudogene Interval_44157 chr13 41295880 41296261 + 0 NA Intergenic Intergenic -22093 ENSMUSG00000090853.1 ENSMUSG00000090853 ENSMUST00000163881 Gm17364 protein_coding Interval_106285 chr3 95132551 95135358 + 0 NA promoter-TSS (ENSMUSG00000053769.5) protein_coding-promoter-TSS (ENSMUSG00000053769.5) -134 ENSMUSG00000053769.5 ENSMUSG00000053769 ENSMUST00000066386 Lysmd1 protein_coding Interval_116453 chr4 112654647 112655340 + 0 NA Intergenic Intergenic 41253 ENSMUSG00000034359.16 ENSMUSG00000034359 ENSMUST00000106559 Skint2 protein_coding Interval_65751 chr16 27147774 27148479 + 0 NA Intergenic Intergenic -159363 ENSMUSG00000052276.8 ENSMUSG00000052276 ENSMUST00000066852 Ostn protein_coding Interval_19794 chr10 109036176 109036381 + 0 NA Intergenic Intergenic -27167 ENSMUSG00000035864.14 ENSMUSG00000035864 ENSMUST00000126278 Syt1 protein_coding Interval_126174 chr5 81402834 81403335 + 0 NA intron (ENSMUSG00000037605.16, intron 6 of 12) protein_coding-intron (ENSMUSG00000037605.16, intron 3 of 24) -132642 ENSMUSG00000107375.1 ENSMUSG00000107375 ENSMUST00000200696 Gm43084 TEC Interval_173047 chrX 68427200 68427498 + 0 NA Intergenic Intergenic -75777 ENSMUSG00000082794.1 ENSMUSG00000082794 ENSMUST00000120092 Gm6806 processed_pseudogene Interval_135612 chr6 41572265 41573053 + 0 NA Intergenic Intergenic -14207 ENSMUSG00000076499.3 ENSMUSG00000076499 ENSMUST00000193003 Trbv31 TR_V_gene Interval_40868 chr12 108984902 108985443 + 0 NA intron (ENSMUSG00000040877.16, intron 2 of 2) protein_coding-intron (ENSMUSG00000040877.16, intron 4 of 7) 6479 ENSMUSG00000113478.1 ENSMUSG00000113478 ENSMUST00000220743 Gm18405 processed_pseudogene Interval_43118 chr13 24316217 24316440 + 0 NA TTS (ENSMUSG00000089580.1) snoRNA-TTS (ENSMUSG00000089580.1) 524 ENSMUSG00000089580.1 ENSMUSG00000089580 ENSMUST00000158955 Gm23340 snoRNA Interval_144491 chr7 25432922 25434347 + 0 NA intron (ENSMUSG00000053714.8, intron 4 of 6) antisense-intron (ENSMUSG00000053714.8, intron 4 of 6) 9829 ENSMUSG00000081732.1 ENSMUSG00000081732 ENSMUST00000117570 Gm15495 processed_pseudogene Interval_40538 chr12 105573925 105575032 + 0 NA intron (ENSMUSG00000021070.6, intron 1 of 2) protein_coding-intron (ENSMUSG00000021070.6, intron 1 of 2) 11252 ENSMUSG00000021070.6 ENSMUSG00000021070 ENSMUST00000001652 Bdkrb2 protein_coding Interval_24213 chr11 31553025 31554122 + 0 NA Intergenic Intergenic 118154 ENSMUSG00000044502.16 ENSMUSG00000044502 ENSMUST00000109415 Bod1 protein_coding Interval_5373 chr1 88109010 88109826 + 0 NA intron (ENSMUSG00000090145.7, intron 2 of 5) protein_coding-intron (ENSMUSG00000090124.7, intron 1 of 4) 6166 ENSMUSG00000090145.7 ENSMUSG00000090145 ENSMUST00000113137 Ugt1a6b protein_coding Interval_163720 chr9 24877987 24879376 + 0 NA Intergenic Intergenic -51336 ENSMUSG00000111507.1 ENSMUSG00000111507 ENSMUST00000214455 Amd-ps6 processed_pseudogene Interval_30968 chr11 97489491 97490423 + 0 NA TTS (ENSMUSG00000047988.1) protein_coding-TTS (ENSMUSG00000047988.1) 10383 ENSMUSG00000047988.1 ENSMUSG00000047988 ENSMUST00000056955 4933428G20Rik protein_coding Interval_97250 chr2 132638873 132639202 + 0 NA intron (ENSMUSG00000074783.10, intron 4 of 5) lincRNA-intron (ENSMUSG00000074783.10, intron 2 of 3) -23205 ENSMUSG00000081445.1 ENSMUSG00000081445 ENSMUST00000121008 Rpl23a-ps4 processed_pseudogene Interval_57870 chr15 24151490 24152314 + 0 NA Intergenic Intergenic -21717 ENSMUSG00000115341.1 ENSMUSG00000115341 ENSMUST00000227502 Gm48919 processed_pseudogene Interval_8871 chr1 151684419 151686886 + 0 NA intron (ENSMUSG00000026483.13, intron 1 of 9) protein_coding-intron (ENSMUSG00000026483.13, intron 1 of 9) 69366 ENSMUSG00000100594.1 ENSMUSG00000100594 ENSMUST00000186444 2810414N06Rik lincRNA Interval_93305 chr2 71805044 71806685 + 0 NA intron (ENSMUSG00000027111.16, intron 1 of 25) protein_coding-intron (ENSMUSG00000027111.16, intron 1 of 25) 18725 ENSMUSG00000027111.16 ENSMUSG00000027111 ENSMUST00000139760 Itga6 protein_coding Interval_171251 chr9 115665422 115665638 + 0 NA promoter-TSS (ENSMUSG00000111398.1) processed_transcript-promoter-TSS (ENSMUSG00000111398.1) -384 ENSMUSG00000111398.1 ENSMUSG00000111398 ENSMUST00000215827 D330037F02Rik processed_transcript Interval_174678 chrX 162848183 162848470 + 0 NA Intergenic Intergenic 1938 ENSMUSG00000088195.1 ENSMUSG00000088195 ENSMUST00000157570 Gm23901 snRNA Interval_80470 chr18 42486637 42487458 + 0 NA promoter-TSS (ENSMUSG00000118058.1) processed_pseudogene-promoter-TSS (ENSMUSG00000118058.1) -41 ENSMUSG00000118058.1 ENSMUSG00000118058 ENSMUST00000237473 Gm3631 processed_pseudogene Interval_131958 chr5 141093195 141094009 + 0 NA Intergenic Intergenic 13171 ENSMUSG00000093344.1 ENSMUSG00000093344 ENSMUST00000175603 Gm26113 miRNA Interval_20919 chr10 122017870 122018076 + 0 NA intron (ENSMUSG00000020121.15, intron 1 of 3) protein_coding-intron (ENSMUSG00000020121.15, intron 1 of 21) 29342 ENSMUSG00000020121.15 ENSMUSG00000020121 ENSMUST00000162710 Srgap1 protein_coding Interval_131648 chr5 139058503 139058800 + 0 NA intron (ENSMUSG00000025855.13, intron 5 of 6) protein_coding-intron (ENSMUSG00000025855.13, intron 6 of 10) 63595 ENSMUSG00000075585.3 ENSMUSG00000075585 ENSMUST00000187923 6330403L08Rik antisense Interval_27358 chr11 66932461 66933451 + 0 NA intron (ENSMUSG00000072834.4, intron 3 of 3) antisense-intron (ENSMUSG00000072834.4, intron 3 of 3) 14130 ENSMUSG00000072834.4 ENSMUSG00000072834 ENSMUST00000126999 Gm12298 antisense Interval_118843 chr4 134010128 134010600 + 0 NA promoter-TSS (ENSMUSG00000050966.9) protein_coding-promoter-TSS (ENSMUSG00000050966.9) -7783 ENSMUSG00000087288.1 ENSMUSG00000087288 ENSMUST00000137962 Gm13061 processed_transcript Interval_108571 chr3 129203373 129205158 + 0 NA intron (ENSMUSG00000028023.16, intron 2 of 3) protein_coding-intron (ENSMUSG00000028023.16, intron 2 of 3) -5741 ENSMUSG00000098515.1 ENSMUSG00000098515 ENSMUST00000184283 Gm27195 sense_intronic Interval_69478 chr16 93794614 93795814 + 0 NA promoter-TSS (ENSMUSG00000097768.2) antisense-promoter-TSS (ENSMUSG00000097768.2) -313 ENSMUSG00000097768.2 ENSMUSG00000097768 ENSMUST00000180967 2310043M15Rik antisense Interval_68538 chr16 78493012 78493399 + 0 NA TTS (ENSMUSG00000116959.1) TEC-TTS (ENSMUSG00000116959.1) 3525 ENSMUSG00000116959.1 ENSMUSG00000116959 ENSMUST00000232118 Gm49604 TEC Interval_157391 chr8 70086877 70088631 + 0 NA intron (ENSMUSG00000007594.10, intron 4 of 4) protein_coding-intron (ENSMUSG00000007594.10, intron 4 of 4) 3610 ENSMUSG00000007594.10 ENSMUSG00000007594 ENSMUST00000213092 Hapln4 protein_coding Interval_74000 chr17 45947642 45948489 + 0 NA Intergenic Intergenic -13794 ENSMUSG00000117040.1 ENSMUSG00000117040 ENSMUST00000233512 Gm49805 lincRNA Interval_164590 chr9 39601918 39604323 + 0 NA intron (ENSMUSG00000038112.15, intron 2 of 5) protein_coding-intron (ENSMUSG00000038112.15, intron 2 of 19) -7535 ENSMUSG00000048299.8 ENSMUSG00000048299 ENSMUST00000050807 Olfr148 protein_coding Interval_44574 chr13 46282565 46283231 + 0 NA intron (ENSMUSG00000063529.3, intron 1 of 4) protein_coding-intron (ENSMUSG00000063529.3, intron 1 of 4) 9177 ENSMUSG00000063529.3 ENSMUSG00000063529 ENSMUST00000076622 Stmnd1 protein_coding Interval_161273 chr8 119431945 119432196 + 0 NA Intergenic Intergenic -5079 ENSMUSG00000074063.10 ENSMUSG00000074063 ENSMUST00000144381 Osgin1 protein_coding Interval_41580 chr12 116485264 116486724 + 0 NA intron (ENSMUSG00000056553.14, intron 1 of 4) protein_coding-intron (ENSMUSG00000056553.14, intron 1 of 22) 224 ENSMUSG00000056553.14 ENSMUSG00000056553 ENSMUST00000070733 Ptprn2 protein_coding Interval_129165 chr5 117941701 117941990 + 0 NA intron (ENSMUSG00000029361.18, intron 21 of 27) protein_coding-intron (ENSMUSG00000029361.18, intron 22 of 28) -2327 ENSMUSG00000098072.1 ENSMUSG00000098072 ENSMUST00000182216 Gm26995 antisense Interval_169827 chr9 102243036 102243870 + 0 NA intron (ENSMUSG00000032537.15, intron 1 of 4) protein_coding-intron (ENSMUSG00000032537.15, intron 1 of 15) -30283 ENSMUSG00000102702.1 ENSMUSG00000102702 ENSMUST00000193748 Gm37260 TEC Interval_736 chr1 10284529 10286573 + 0 NA Intergenic Intergenic -86749 ENSMUSG00000102556.1 ENSMUSG00000102556 ENSMUST00000192111 Gm37569 TEC Interval_13247 chr10 13562643 13565073 + 0 NA TTS (ENSMUSG00000019808.8) protein_coding-TTS (ENSMUSG00000019808.8) -10716 ENSMUSG00000019809.16 ENSMUSG00000019809 ENSMUST00000145337 Pex3 protein_coding Interval_50250 chr14 11306817 11307044 + 0 NA intron (ENSMUSG00000097148.2, intron 3 of 3) protein_coding-intron (ENSMUSG00000097148.2, intron 3 of 3) 24453 ENSMUSG00000099218.1 ENSMUSG00000099218 ENSMUST00000184251 Mir5124b miRNA Interval_54774 chr14 74946435 74949054 + 0 NA exon (ENSMUSG00000068015.8, exon 1 of 20) protein_coding-exon (ENSMUSG00000068015.8, exon 1 of 20) 21299 ENSMUSG00000115002.1 ENSMUSG00000115002 ENSMUST00000227773 Gm10847 antisense Interval_21808 chr11 4474184 4474664 + 0 NA Intergenic Intergenic 13942 ENSMUSG00000034354.17 ENSMUSG00000034354 ENSMUST00000144242 Mtmr3 protein_coding Interval_100565 chr2 170152588 170153679 + 0 NA Intergenic Intergenic -5030 ENSMUSG00000052056.14 ENSMUSG00000052056 ENSMUST00000149318 Zfp217 protein_coding Interval_58231 chr15 31245856 31246345 + 0 NA intron (ENSMUSG00000039168.15, intron 2 of 3) protein_coding-intron (ENSMUSG00000039168.15, intron 2 of 3) 21540 ENSMUSG00000039168.15 ENSMUSG00000039168 ENSMUST00000185618 Dap protein_coding Interval_94488 chr2 91609257 91609999 + 0 NA intron (ENSMUSG00000040549.16, intron 37 of 43) protein_coding-intron (ENSMUSG00000040549.16, intron 36 of 42) 13558 ENSMUSG00000077221.1 ENSMUSG00000077221 ENSMUST00000104033 Snord67 snoRNA Interval_127177 chr5 100845381 100846989 + 0 NA promoter-TSS (ENSMUSG00000029314.14) protein_coding-promoter-TSS (ENSMUSG00000029314.14) -232 ENSMUSG00000029314.14 ENSMUSG00000029314 ENSMUST00000145612 Gpat3 protein_coding Interval_96626 chr2 126607955 126609962 + 0 NA intron (ENSMUSG00000027360.5, intron 2 of 7) protein_coding-intron (ENSMUSG00000027360.5, intron 2 of 11) 10341 ENSMUSG00000027360.5 ENSMUSG00000027360 ENSMUST00000148591 Hdc protein_coding Interval_80601 chr18 44544142 44544462 + 0 NA intron (ENSMUSG00000071856.10, intron 3 of 18) protein_coding-intron (ENSMUSG00000071856.10, intron 3 of 18) -117801 ENSMUSG00000097610.2 ENSMUSG00000097610 ENSMUST00000202771 A930012L18Rik antisense Interval_44247 chr13 42902784 42903106 + 0 NA intron (ENSMUSG00000054728.17, intron 1 of 1) protein_coding-intron (ENSMUSG00000054728.17, intron 1 of 11) -13706 ENSMUSG00000054728.17 ENSMUSG00000054728 ENSMUST00000161201 Phactr1 protein_coding Interval_126950 chr5 98184975 98186762 + 0 NA promoter-TSS (ENSMUSG00000045238.9) antisense-promoter-TSS (ENSMUSG00000045238.9) 116 ENSMUSG00000045238.9 ENSMUSG00000045238 ENSMUST00000205851 A730035I17Rik antisense Interval_103959 chr3 55520321 55520969 + 0 NA intron (ENSMUSG00000027797.15, intron 12 of 12) protein_coding-intron (ENSMUSG00000027797.15, intron 16 of 16) 3076 ENSMUSG00000106651.1 ENSMUSG00000106651 ENSMUST00000197563 Gm42608 TEC Interval_91381 chr2 38410017 38411181 + 0 NA Intergenic Intergenic -13403 ENSMUSG00000085950.1 ENSMUSG00000085950 ENSMUST00000146404 Gm13589 lincRNA Interval_42250 chr13 11000560 11000730 + 0 NA Intergenic Intergenic 26222 ENSMUSG00000113673.1 ENSMUSG00000113673 ENSMUST00000221075 Gm47486 lincRNA Interval_26231 chr11 55313565 55314861 + 0 NA intron (ENSMUSG00000055333.14, intron 1 of 23) protein_coding-intron (ENSMUSG00000055333.14, intron 1 of 23) -1956 ENSMUSG00000055333.14 ENSMUSG00000055333 ENSMUST00000108864 Fat2 protein_coding Interval_153372 chr7 144106009 144107114 + 0 NA intron (ENSMUSG00000037541.22, intron 8 of 17) protein_coding-intron (ENSMUSG00000037541.22, intron 9 of 22) 4524 ENSMUSG00000109500.1 ENSMUSG00000109500 ENSMUST00000207456 Gm44999 TEC Interval_169039 chr9 90755066 90755243 + 0 NA Intergenic Intergenic -7612 ENSMUSG00000100663.1 ENSMUSG00000100663 ENSMUST00000187176 Gm29604 processed_pseudogene Interval_109342 chr3 139198271 139199056 + 0 NA Intergenic Intergenic -7031 ENSMUSG00000047940.13 ENSMUSG00000047940 ENSMUST00000062306 Stpg2 protein_coding Interval_130927 chr5 134099032 134100110 + 0 NA promoter-TSS (ENSMUSG00000015944.9) protein_coding-promoter-TSS (ENSMUSG00000015944.9) -363 ENSMUSG00000087344.1 ENSMUSG00000087344 ENSMUST00000140421 Gm15627 lincRNA Interval_154066 chr8 12438235 12440018 + 0 NA Intergenic Intergenic 27838 ENSMUSG00000109921.1 ENSMUSG00000109921 ENSMUST00000209741 Gm33326 lincRNA Interval_76404 chr17 79975217 79977203 + 0 NA Intergenic Intergenic 5452 ENSMUSG00000117415.1 ENSMUSG00000117415 ENSMUST00000234800 Gm41625 lincRNA Interval_79059 chr18 24215426 24216678 + 0 NA intron (ENSMUSG00000000420.15, intron 1 of 4) protein_coding-intron (ENSMUSG00000000420.15, intron 1 of 12) -16545 ENSMUSG00000000420.15 ENSMUSG00000000420 ENSMUST00000170191 Galnt1 protein_coding Interval_61472 chr15 81836277 81836948 + 0 NA Intergenic Intergenic 7101 ENSMUSG00000069439.3 ENSMUSG00000069439 ENSMUST00000092020 Gm8444 processed_pseudogene Interval_153722 chr8 5270960 5271488 + 0 NA Intergenic Intergenic 61889 ENSMUSG00000064507.1 ENSMUSG00000064507 ENSMUST00000082573 n-R5s94 rRNA Interval_19477 chr10 99979231 99979490 + 0 NA Intergenic Intergenic -9261 ENSMUSG00000112299.1 ENSMUSG00000112299 ENSMUST00000219489 Gm17870 processed_pseudogene Interval_97771 chr2 143947508 143948027 + 0 NA TTS (ENSMUSG00000027422.15) protein_coding-TTS (ENSMUSG00000027422.15) 9878 ENSMUSG00000027422.15 ENSMUSG00000027422 ENSMUST00000037875 Rrbp1 protein_coding Interval_111588 chr4 24090087 24090764 + 0 NA Intergenic Intergenic -147675 ENSMUSG00000083154.1 ENSMUSG00000083154 ENSMUST00000117711 Gm11892 processed_pseudogene Interval_49412 chr13 111796072 111797719 + 0 NA intron (ENSMUSG00000021754.17, intron 1 of 19) protein_coding-intron (ENSMUSG00000021754.17, intron 1 of 19) -13573 ENSMUSG00000085204.1 ENSMUSG00000085204 ENSMUST00000153958 Gm15327 processed_transcript Interval_35816 chr12 30372793 30373770 + 0 NA promoter-TSS (ENSMUSG00000020672.14) protein_coding-promoter-TSS (ENSMUSG00000020672.14) 14 ENSMUSG00000020672.14 ENSMUSG00000020672 ENSMUST00000218489 Sntg2 protein_coding Interval_51685 chr14 31376012 31376449 + 0 NA intron (ENSMUSG00000021892.14, intron 7 of 10) protein_coding-intron (ENSMUSG00000021892.14, intron 7 of 8) 10674 ENSMUSG00000021893.14 ENSMUSG00000021893 ENSMUST00000228237 Capn7 protein_coding Interval_1890 chr1 34316757 34317017 + 0 NA Intergenic Intergenic 13420 ENSMUSG00000104397.1 ENSMUSG00000104397 ENSMUST00000193131 Gm37958 lincRNA Interval_34192 chr11 121192246 121192500 + 0 NA intron (ENSMUSG00000025169.6, intron 7 of 8) protein_coding-intron (ENSMUSG00000025169.6, intron 7 of 8) 12338 ENSMUSG00000025169.6 ENSMUSG00000025169 ENSMUST00000026169 Ogfod3 protein_coding Interval_7570 chr1 132263429 132267361 + 0 NA Intergenic Intergenic 15016 ENSMUSG00000101549.1 ENSMUSG00000101549 ENSMUST00000185761 Gm29630 lincRNA Interval_2089 chr1 36324095 36324676 + 0 NA TTS (ENSMUSG00000037447.16) protein_coding-TTS (ENSMUSG00000037447.16) -8323 ENSMUSG00000102762.1 ENSMUSG00000102762 ENSMUST00000192234 4930403P22Rik lincRNA Interval_166218 chr9 57560537 57561568 + 0 NA promoter-TSS (ENSMUSG00000040188.10) protein_coding-promoter-TSS (ENSMUSG00000040188.10) -8343 ENSMUSG00000032306.14 ENSMUSG00000032306 ENSMUST00000124593 Mpi protein_coding Interval_159200 chr8 91620188 91620683 + 0 NA intron (ENSMUSG00000055932.15, intron 5 of 5) protein_coding-intron (ENSMUSG00000055932.15, intron 8 of 8) 9294 ENSMUSG00000090778.1 ENSMUSG00000090778 ENSMUST00000168442 Gm3235 antisense Interval_147178 chr7 64155684 64156038 + 0 NA intron (ENSMUSG00000030523.18, intron 1 of 7) protein_coding-intron (ENSMUSG00000030523.18, intron 1 of 26) 46663 ENSMUSG00000108645.1 ENSMUSG00000108645 ENSMUST00000206473 Gm44722 TEC Interval_160760 chr8 111989696 111990593 + 0 NA intron (ENSMUSG00000031949.17, intron 2 of 8) protein_coding-intron (ENSMUSG00000031949.17, intron 2 of 9) 2158 ENSMUSG00000031949.17 ENSMUSG00000031949 ENSMUST00000120457 Adat1 protein_coding Interval_19593 chr10 104727884 104728158 + 0 NA Intergenic Intergenic 137287 ENSMUSG00000089019.1 ENSMUSG00000089019 ENSMUST00000158394 Gm25522 snRNA Interval_158224 chr8 80055597 80058463 + 0 NA intron (ENSMUSG00000064325.4, intron 1 of 12) protein_coding-intron (ENSMUSG00000064325.4, intron 1 of 12) 29667 ENSMUSG00000109738.1 ENSMUSG00000109738 ENSMUST00000210189 Gm33096 processed_pseudogene Interval_35052 chr12 16873278 16873596 + 0 NA Intergenic Intergenic -22556 ENSMUSG00000114018.1 ENSMUSG00000114018 ENSMUST00000221201 Gm36495 lincRNA Interval_30050 chr11 88892832 88893072 + 0 NA Intergenic Intergenic -12169 ENSMUSG00000065012.1 ENSMUSG00000065012 ENSMUST00000083078 Gm23507 snRNA Interval_17274 chr10 75516757 75518253 + 0 NA promoter-TSS (ENSMUSG00000020180.10) protein_coding-promoter-TSS (ENSMUSG00000020180.10) -207 ENSMUSG00000033416.15 ENSMUSG00000033416 ENSMUST00000136763 Gucd1 protein_coding Interval_110650 chr4 5717453 5717968 + 0 NA intron (ENSMUSG00000049119.14, intron 2 of 3) protein_coding-intron (ENSMUSG00000049119.14, intron 1 of 2) -29908 ENSMUSG00000077392.1 ENSMUSG00000077392 ENSMUST00000104204 Gm24337 snoRNA Interval_102312 chr3 21727716 21729140 + 0 NA Intergenic Intergenic 25613 ENSMUSG00000105440.1 ENSMUSG00000105440 ENSMUST00000200150 Gm31693 lincRNA Interval_133698 chr6 8833903 8834146 + 0 NA Intergenic Intergenic -75625 ENSMUSG00000062995.12 ENSMUSG00000062995 ENSMUST00000151758 Ica1 protein_coding Interval_147912 chr7 75509342 75509715 + 0 NA intron (ENSMUSG00000066406.16, intron 1 of 3) protein_coding-intron (ENSMUSG00000066406.16, intron 1 of 36) 24667 ENSMUSG00000108560.1 ENSMUSG00000108560 ENSMUST00000205567 Gm44695 TEC Interval_46881 chr13 73072910 73073176 + 0 NA Intergenic Intergenic -160352 ENSMUSG00000113952.1 ENSMUSG00000113952 ENSMUST00000223231 Rpl31-ps2 processed_pseudogene Interval_52862 chr14 51185038 51185794 + 0 NA Intergenic Intergenic 13732 ENSMUSG00000047894.2 ENSMUSG00000047894 ENSMUST00000051274 Ang2 protein_coding Interval_127296 chr5 102187386 102187605 + 0 NA Intergenic Intergenic 25204 ENSMUSG00000106189.1 ENSMUSG00000106189 ENSMUST00000196547 Gm42933 processed_pseudogene Interval_9528 chr1 158596871 158598698 + 0 NA TTS (ENSMUSG00000026587.15) protein_coding-TTS (ENSMUSG00000026587.15) -43485 ENSMUSG00000103971.1 ENSMUSG00000103971 ENSMUST00000192868 Gm37679 antisense Interval_97191 chr2 132151056 132151796 + 0 NA intron (ENSMUSG00000086756.1, intron 1 of 2) antisense-intron (ENSMUSG00000086756.1, intron 1 of 2) 6893 ENSMUSG00000086756.1 ENSMUSG00000086756 ENSMUST00000131603 Gm14051 antisense Interval_6416 chr1 107555315 107556179 + 0 NA Intergenic Intergenic 23376 ENSMUSG00000092572.7 ENSMUSG00000092572 ENSMUST00000194951 Serpinb10 polymorphic_pseudogene Interval_145479 chr7 35091273 35091518 + 0 NA TTS (ENSMUSG00000108657.1) lincRNA-TTS (ENSMUSG00000108657.1) 4559 ENSMUSG00000108657.1 ENSMUSG00000108657 ENSMUST00000205323 Gm35611 lincRNA Interval_33885 chr11 119197875 119199362 + 0 NA intron (ENSMUSG00000039976.4, intron 3 of 11) protein_coding-intron (ENSMUSG00000039976.4, intron 3 of 11) -14102 ENSMUSG00000085548.1 ENSMUSG00000085548 ENSMUST00000151091 Gm11753 sense_intronic Interval_102352 chr3 22101658 22101883 + 0 NA intron (ENSMUSG00000027630.13, intron 2 of 16) protein_coding-intron (ENSMUSG00000027630.13, intron 1 of 15) -20655 ENSMUSG00000103293.1 ENSMUSG00000103293 ENSMUST00000195073 Gm5842 processed_pseudogene Interval_66188 chr16 32224759 32225543 + 0 NA Intergenic Intergenic 18704 ENSMUSG00000080440.1 ENSMUSG00000080440 ENSMUST00000116790 Gm25848 snoRNA Interval_147642 chr7 70537855 70538065 + 0 NA Intergenic Intergenic 6738 ENSMUSG00000108899.1 ENSMUSG00000108899 ENSMUST00000209120 Gm44811 TEC Interval_173278 chrX 75882740 75883008 + 0 NA Intergenic Intergenic -3209 ENSMUSG00000077650.1 ENSMUSG00000077650 ENSMUST00000104462 Gm23320 snoRNA Interval_26074 chr11 53932832 53933458 + 0 NA Intergenic Intergenic -3669 ENSMUSG00000081098.1 ENSMUSG00000081098 ENSMUST00000118476 Gm12220 unprocessed_pseudogene Interval_90726 chr2 32140469 32141057 + 0 NA Intergenic Intergenic -32408 ENSMUSG00000099155.1 ENSMUSG00000099155 ENSMUST00000184513 Gm27805 miRNA Interval_2993 chr1 51937458 51937695 + 0 NA TTS (ENSMUSG00000100696.1) processed_pseudogene-TTS (ENSMUSG00000100696.1) 1089 ENSMUSG00000100696.1 ENSMUSG00000100696 ENSMUST00000189886 Gm8419 processed_pseudogene Interval_158156 chr8 79294481 79295591 + 0 NA promoter-TSS (ENSMUSG00000037022.3) protein_coding-promoter-TSS (ENSMUSG00000037022.3) -332 ENSMUSG00000097174.2 ENSMUSG00000097174 ENSMUST00000209627 Gm4890 bidirectional_promoter_lncRNA Interval_85372 chr19 25303634 25303940 + 0 NA intron (ENSMUSG00000032702.16, intron 2 of 13) protein_coding-intron (ENSMUSG00000032702.16, intron 2 of 13) 43416 ENSMUSG00000118238.1 ENSMUSG00000118238 ENSMUST00000235913 Gm34432 processed_pseudogene Interval_56380 chr14 118253202 118253859 + 0 NA promoter-TSS (ENSMUSG00000090534.1) lincRNA-promoter-TSS (ENSMUSG00000090534.1) -186 ENSMUSG00000090534.1 ENSMUSG00000090534 ENSMUST00000169262 Gm4675 lincRNA Interval_42521 chr13 14438954 14440781 + 0 NA intron (ENSMUSG00000021301.9, intron 1 of 7) protein_coding-intron (ENSMUSG00000021301.9, intron 1 of 28) -60294 ENSMUSG00000113981.1 ENSMUSG00000113981 ENSMUST00000222578 Gm47011 TEC Interval_10401 chr1 170430632 170431123 + 0 NA intron (ENSMUSG00000038473.14, intron 2 of 7) protein_coding-intron (ENSMUSG00000038473.14, intron 2 of 3) -110097 ENSMUSG00000038473.14 ENSMUSG00000038473 ENSMUST00000159665 Nos1ap protein_coding Interval_127673 chr5 106485341 106485523 + 0 NA Intergenic Intergenic -14425 ENSMUSG00000097018.2 ENSMUSG00000097018 ENSMUST00000180862 Gm26872 lincRNA Interval_160458 chr8 109661842 109662290 + 0 NA intron (ENSMUSG00000048827.12, intron 7 of 15) protein_coding-intron (ENSMUSG00000048827.12, intron 25 of 31) 30734 ENSMUSG00000048827.12 ENSMUSG00000048827 ENSMUST00000212545 Pkd1l3 protein_coding Interval_161979 chr8 124239527 124239857 + 0 NA intron (ENSMUSG00000089704.9, intron 1 of 4) protein_coding-intron (ENSMUSG00000089704.9, intron 1 of 15) -55674 ENSMUSG00000089704.9 ENSMUSG00000089704 ENSMUST00000147911 Galnt2 protein_coding Interval_28181 chr11 73678879 73679708 + 0 NA Intergenic Intergenic -9506 ENSMUSG00000060630.7 ENSMUSG00000060630 ENSMUST00000145996 Zfp735 protein_coding Interval_158116 chr8 78852013 78853348 + 0 NA Intergenic Intergenic 17188 ENSMUSG00000069986.4 ENSMUSG00000069986 ENSMUST00000093411 Gm8054 processed_pseudogene Interval_36307 chr12 40990330 40990947 + 0 NA Intergenic Intergenic 29614 ENSMUSG00000114130.1 ENSMUSG00000114130 ENSMUST00000222200 Gm18954 processed_pseudogene Interval_169992 chr9 103471602 103472252 + 0 NA promoter-TSS (ENSMUSG00000085168.2) antisense-promoter-TSS (ENSMUSG00000085168.2) -17399 ENSMUSG00000085168.2 ENSMUSG00000085168 ENSMUST00000215604 Gm16252 antisense Interval_34827 chr12 12318531 12318760 + 0 NA intron (ENSMUSG00000020589.17, intron 3 of 12) protein_coding-intron (ENSMUSG00000020589.17, intron 2 of 11) 56462 ENSMUSG00000020589.17 ENSMUSG00000020589 ENSMUST00000222357 Fam49a protein_coding Interval_90744 chr2 32252012 32252309 + 0 NA TTS (ENSMUSG00000039254.16) protein_coding-TTS (ENSMUSG00000039254.16) 3497 ENSMUSG00000039254.16 ENSMUSG00000039254 ENSMUST00000151598 Pomt1 protein_coding Interval_2630 chr1 42636613 42637688 + 0 NA intron (ENSMUSG00000060424.14, intron 2 of 3) lincRNA-intron (ENSMUSG00000060424.14, intron 2 of 3) -14576 ENSMUSG00000104199.1 ENSMUSG00000104199 ENSMUST00000191831 4930420N18Rik TEC Interval_143541 chr7 12385404 12385720 + 0 NA Intergenic Intergenic 7321 ENSMUSG00000092331.1 ENSMUSG00000092331 ENSMUST00000173436 Vmn1r-ps66 unprocessed_pseudogene Interval_17299 chr10 75689868 75690840 + 0 NA intron (ENSMUSG00000020196.10, intron 2 of 2) protein_coding-intron (ENSMUSG00000020196.10, intron 28 of 36) 42266 ENSMUSG00000020196.10 ENSMUSG00000020196 ENSMUST00000218480 Cabin1 protein_coding Interval_84905 chr19 18693913 18694148 + 0 NA intron (ENSMUSG00000024726.10, intron 6 of 7) protein_coding-intron (ENSMUSG00000024726.10, intron 6 of 7) -19163 ENSMUSG00000047044.7 ENSMUSG00000047044 ENSMUST00000055792 D030056L22Rik protein_coding Interval_149554 chr7 99537265 99538416 + 0 NA intron (ENSMUSG00000018909.15, intron 1 of 15) protein_coding-intron (ENSMUSG00000018909.15, intron 1 of 14) 2374 ENSMUSG00000018909.15 ENSMUSG00000018909 ENSMUST00000162290 Arrb1 protein_coding Interval_160096 chr8 106403157 106403795 + 0 NA Intergenic Intergenic -11851 ENSMUSG00000031907.9 ENSMUSG00000031907 ENSMUST00000212874 Zfp90 protein_coding Interval_171090 chr9 114491895 114492606 + 0 NA TTS (ENSMUSG00000047898.7) protein_coding-TTS (ENSMUSG00000047898.7) 12666 ENSMUSG00000047898.7 ENSMUSG00000047898 ENSMUST00000215959 Ccr4 protein_coding Interval_120349 chr4 148057816 148058527 + 0 NA exon (ENSMUSG00000029009.17, exon 12 of 12) protein_coding-exon (ENSMUSG00000029009.17, exon 12 of 12) 5493 ENSMUSG00000029009.17 ENSMUSG00000029009 ENSMUST00000156113 Mthfr protein_coding Interval_60235 chr15 68907712 68908011 + 0 NA Intergenic Intergenic -20836 ENSMUSG00000022332.8 ENSMUSG00000022332 ENSMUST00000230073 Khdrbs3 protein_coding Interval_5088 chr1 84868450 84870006 + 0 NA promoter-TSS (ENSMUSG00000073633.9) protein_coding-promoter-TSS (ENSMUSG00000073633.9) 77 ENSMUSG00000073633.9 ENSMUSG00000073633 ENSMUST00000151737 Fbxo36 protein_coding Interval_27537 chr11 68531305 68532803 + 0 NA intron (ENSMUSG00000046207.14, intron 9 of 19) protein_coding-intron (ENSMUSG00000046207.14, intron 9 of 19) -24132 ENSMUSG00000048329.7 ENSMUSG00000048329 ENSMUST00000053211 Mfsd6l protein_coding Interval_58634 chr15 36708330 36708760 + 0 NA Intergenic Intergenic -12880 ENSMUSG00000115127.1 ENSMUSG00000115127 ENSMUST00000226482 Gm46515 lincRNA Interval_128280 chr5 112252968 112253781 + 0 NA promoter-TSS (ENSMUSG00000066975.12) protein_coding-promoter-TSS (ENSMUSG00000066975.12) -856 ENSMUSG00000066975.12 ENSMUSG00000066975 ENSMUST00000086629 Cryba4 protein_coding Interval_119246 chr4 136435409 136436004 + 0 NA intron (ENSMUSG00000070687.11, intron 1 of 1) protein_coding-intron (ENSMUSG00000070687.11, intron 1 of 1) 11094 ENSMUSG00000070687.11 ENSMUSG00000070687 ENSMUST00000133818 Htr1d protein_coding Interval_109139 chr3 136669390 136671899 + 0 NA promoter-TSS (ENSMUSG00000028161.17) protein_coding-promoter-TSS (ENSMUSG00000028161.17) -30567 ENSMUSG00000106596.1 ENSMUSG00000106596 ENSMUST00000200507 Gm42822 TEC Interval_48711 chr13 101784878 101786858 + 0 NA Intergenic Intergenic -32663 ENSMUSG00000102635.1 ENSMUSG00000102635 ENSMUST00000193295 Gm36638 TEC Interval_47776 chr13 92635618 92636231 + 0 NA intron (ENSMUSG00000021703.9, intron 1 of 4) protein_coding-intron (ENSMUSG00000021703.9, intron 1 of 11) -59752 ENSMUSG00000046957.5 ENSMUSG00000046957 ENSMUST00000050658 Spz1 protein_coding Interval_145348 chr7 34147083 34147825 + 0 NA intron (ENSMUSG00000052997.15, intron 13 of 16) protein_coding-intron (ENSMUSG00000052997.15, intron 13 of 16) 16887 ENSMUSG00000052997.15 ENSMUSG00000052997 ENSMUST00000206651 Uba2 protein_coding Interval_60880 chr15 77334375 77336232 + 0 NA Intergenic Intergenic 31396 ENSMUSG00000116413.1 ENSMUSG00000116413 ENSMUST00000230034 Gm49436 TEC Interval_111988 chr4 33030864 33031930 + 0 NA promoter-TSS (ENSMUSG00000028277.13) protein_coding-promoter-TSS (ENSMUSG00000028277.13) -74 ENSMUSG00000085037.1 ENSMUSG00000085037 ENSMUST00000155691 4933421O10Rik processed_transcript Interval_80248 chr18 38531537 38532096 + 0 NA Intergenic Intergenic -50513 ENSMUSG00000118112.1 ENSMUSG00000118112 ENSMUST00000236084 Gm50349 processed_pseudogene Interval_74376 chr17 49739332 49739595 + 0 NA intron (ENSMUSG00000023999.14, intron 1 of 2) protein_coding-intron (ENSMUSG00000023999.14, intron 10 of 11) 82362 ENSMUSG00000090012.1 ENSMUSG00000090012 ENSMUST00000159971 Gm16555 antisense Interval_7690 chr1 133073134 133074170 + 0 NA intron (ENSMUSG00000026447.17, intron 4 of 4) protein_coding-intron (ENSMUSG00000026447.17, intron 5 of 32) 5073 ENSMUSG00000026447.17 ENSMUSG00000026447 ENSMUST00000239467 Pik3c2b protein_coding Interval_123421 chr5 32412350 32413222 + 0 NA Intergenic Intergenic -7217 ENSMUSG00000107211.1 ENSMUSG00000107211 ENSMUST00000202263 Gm5864 processed_pseudogene Interval_46506 chr13 66705898 66706625 + 0 NA intron (ENSMUSG00000114327.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000114327.1, intron 1 of 1) -17909 ENSMUSG00000114549.1 ENSMUSG00000114549 ENSMUST00000224860 Vmn2r-ps106 unprocessed_pseudogene Interval_25864 chr11 52239308 52239768 + 0 NA intron (ENSMUSG00000036309.14, intron 2 of 6) protein_coding-intron (ENSMUSG00000036309.14, intron 2 of 5) 5814 ENSMUSG00000086920.1 ENSMUSG00000086920 ENSMUST00000143016 Gm12207 antisense Interval_130519 chr5 128536806 128537526 + 0 NA Intergenic Intergenic 16945 ENSMUSG00000105172.1 ENSMUSG00000105172 ENSMUST00000196193 Gm42499 TEC Interval_50283 chr14 11637308 11639034 + 0 NA intron (ENSMUSG00000021745.14, intron 1 of 3) protein_coding-intron (ENSMUSG00000021745.14, intron 1 of 29) -117401 ENSMUSG00000114849.1 ENSMUSG00000114849 ENSMUST00000224543 Gm48595 lincRNA Interval_134544 chr6 29456155 29456542 + 0 NA exon (ENSMUSG00000068699.12, exon 40 of 48) protein_coding-exon (ENSMUSG00000068699.12, exon 40 of 48) -11720 ENSMUSG00000004285.12 ENSMUSG00000004285 ENSMUST00000149646 Atp6v1f protein_coding Interval_107141 chr3 103852086 103852765 + 0 NA intron (ENSMUSG00000044165.12, intron 1 of 1) protein_coding-intron (ENSMUSG00000044165.12, intron 3 of 3) 5601 ENSMUSG00000044165.12 ENSMUSG00000044165 ENSMUST00000196184 Bcl2l15 protein_coding Interval_81767 chr18 64504698 64505010 + 0 NA TTS (ENSMUSG00000024587.10) protein_coding-TTS (ENSMUSG00000024587.10) 7023 ENSMUSG00000024587.10 ENSMUSG00000024587 ENSMUST00000237027 Nars protein_coding Interval_153189 chr7 142255540 142256341 + 0 NA Intergenic Intergenic 2414 ENSMUSG00000090455.2 ENSMUSG00000090455 ENSMUST00000171531 Gm2431 unprocessed_pseudogene Interval_127872 chr5 108433777 108434834 + 0 NA promoter-TSS (ENSMUSG00000050856.16) protein_coding-promoter-TSS (ENSMUSG00000050856.16) 92 ENSMUSG00000050856.16 ENSMUSG00000050856 ENSMUST00000123184 Atp5k protein_coding Interval_52098 chr14 35995945 35996332 + 0 NA Intergenic Intergenic 15144 ENSMUSG00000115274.1 ENSMUSG00000115274 ENSMUST00000228746 Gm49040 processed_pseudogene Interval_52818 chr14 50859281 50859700 + 0 NA intron (ENSMUSG00000006281.8, intron 9 of 54) protein_coding-intron (ENSMUSG00000006281.8, intron 9 of 54) -10894 ENSMUSG00000097431.2 ENSMUSG00000097431 ENSMUST00000228254 Gm26782 antisense Interval_134851 chr6 32511385 32512251 + 0 NA intron (ENSMUSG00000086763.1, intron 1 of 1) protein_coding-intron (ENSMUSG00000029765.12, intron 2 of 31) 745 ENSMUSG00000086763.1 ENSMUSG00000086763 ENSMUST00000150314 Plxna4os1 antisense Interval_109299 chr3 138764123 138765231 + 0 NA intron (ENSMUSG00000028152.10, intron 1 of 3) protein_coding-intron (ENSMUSG00000028152.10, intron 1 of 7) 21908 ENSMUSG00000028152.10 ENSMUSG00000028152 ENSMUST00000121826 Tspan5 protein_coding Interval_74907 chr17 57214863 57215095 + 0 NA TTS (ENSMUSG00000024164.15) protein_coding-TTS (ENSMUSG00000024164.15) 2249 ENSMUSG00000099066.1 ENSMUSG00000099066 ENSMUST00000184453 Mir6978 miRNA Interval_85066 chr19 21967340 21967778 + 0 NA Intergenic Intergenic -16670 ENSMUSG00000118237.1 ENSMUSG00000118237 ENSMUST00000237102 Gm50133 lincRNA Interval_161805 chr8 122916922 122918366 + 0 NA intron (ENSMUSG00000035569.17, intron 1 of 2) protein_coding-intron (ENSMUSG00000035569.17, intron 2 of 12) 47095 ENSMUSG00000110440.1 ENSMUSG00000110440 ENSMUST00000212728 Gm45894 antisense Interval_20794 chr10 120990645 120991843 + 0 NA intron (ENSMUSG00000112192.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000112192.1, intron 1 of 1) 9817 ENSMUSG00000112192.1 ENSMUSG00000112192 ENSMUST00000219168 Gm48341 lincRNA Interval_43992 chr13 38819341 38819988 + 0 NA intron (ENSMUSG00000114319.1, intron 2 of 2) lincRNA-intron (ENSMUSG00000114767.1, intron 3 of 3) 6091 ENSMUSG00000114319.1 ENSMUSG00000114319 ENSMUST00000225304 Gm47509 lincRNA Interval_162570 chr9 4654087 4654301 + 0 NA intron (ENSMUSG00000025892.16, intron 3 of 15) protein_coding-intron (ENSMUSG00000025892.16, intron 4 of 16) 141325 ENSMUSG00000025892.16 ENSMUSG00000025892 ENSMUST00000163309 Gria4 protein_coding Interval_2524 chr1 39949388 39950762 + 0 NA intron (ENSMUSG00000026074.15, intron 2 of 31) protein_coding-intron (ENSMUSG00000026074.15, intron 2 of 30) 48896 ENSMUSG00000026074.15 ENSMUSG00000026074 ENSMUST00000191657 Map4k4 protein_coding Interval_142114 chr6 137234456 137234880 + 0 NA Intergenic Intergenic -87739 ENSMUSG00000107567.1 ENSMUSG00000107567 ENSMUST00000203679 4930480K02Rik TEC Interval_90656 chr2 31725274 31727458 + 0 NA intron (ENSMUSG00000026842.16, intron 2 of 11) protein_coding-intron (ENSMUSG00000026842.16, intron 1 of 10) 37248 ENSMUSG00000118600.1 ENSMUSG00000118600 ENSMUST00000239231 AL929275.1 protein_coding Interval_22549 chr11 11700691 11701022 + 0 NA intron (ENSMUSG00000018654.17, intron 2 of 2) protein_coding-intron (ENSMUSG00000018654.17, intron 2 of 6) -4417 ENSMUSG00000073145.6 ENSMUSG00000073145 ENSMUST00000132007 Gm12000 antisense Interval_109155 chr3 136928243 136928443 + 0 NA intron (ENSMUSG00000028161.17, intron 4 of 4) protein_coding-intron (ENSMUSG00000028161.17, intron 11 of 13) 18201 ENSMUSG00000106398.1 ENSMUSG00000106398 ENSMUST00000197132 Gm43357 lincRNA Interval_50330 chr14 11872553 11872818 + 0 NA intron (ENSMUSG00000021745.14, intron 2 of 3) protein_coding-intron (ENSMUSG00000021745.14, intron 2 of 29) 5091 ENSMUSG00000114431.1 ENSMUSG00000114431 ENSMUST00000224051 Gm48601 TEC Interval_71870 chr17 26633021 26633276 + 0 NA intron (ENSMUSG00000001576.15, intron 7 of 11) protein_coding-intron (ENSMUSG00000001576.15, intron 6 of 8) -8048 ENSMUSG00000091078.1 ENSMUSG00000091078 ENSMUST00000165911 Gm17218 antisense Interval_8143 chr1 136024639 136024881 + 0 NA intron (ENSMUSG00000026411.17, intron 4 of 5) protein_coding-intron (ENSMUSG00000026411.17, intron 4 of 5) 16610 ENSMUSG00000026411.17 ENSMUSG00000026411 ENSMUST00000140545 Tmem9 protein_coding Interval_138810 chr6 92100191 92101336 + 0 NA intron (ENSMUSG00000005893.14, intron 1 of 14) protein_coding-intron (ENSMUSG00000005893.14, intron 1 of 14) 33334 ENSMUSG00000034037.14 ENSMUSG00000034037 ENSMUST00000130369 Fgd5 protein_coding Interval_45546 chr13 55755162 55755352 + 0 NA intron (ENSMUSG00000021496.12, intron 2 of 3) protein_coding-intron (ENSMUSG00000021496.12, intron 2 of 3) 27889 ENSMUSG00000021496.12 ENSMUSG00000021496 ENSMUST00000124968 Pcbd2 protein_coding Interval_134934 chr6 33882634 33882960 + 0 NA intron (ENSMUSG00000029763.17, intron 14 of 17) protein_coding-intron (ENSMUSG00000029763.17, intron 14 of 17) 109614 ENSMUSG00000087441.1 ENSMUSG00000087441 ENSMUST00000155496 Gm13853 lincRNA Interval_94101 chr2 84132149 84133034 + 0 NA Intergenic Intergenic -12299 ENSMUSG00000081980.1 ENSMUSG00000081980 ENSMUST00000118542 Gm13702 processed_pseudogene Interval_139777 chr6 108606608 108606948 + 0 NA intron (ENSMUSG00000087341.4, intron 3 of 6) antisense-intron (ENSMUSG00000087341.4, intron 3 of 6) 7217 ENSMUSG00000087341.4 ENSMUSG00000087341 ENSMUST00000204759 0610040F04Rik antisense Interval_142265 chr6 140258056 140259089 + 0 NA Intergenic Intergenic 37884 ENSMUSG00000107572.1 ENSMUSG00000107572 ENSMUST00000204425 Gm3961 TEC Interval_98157 chr2 148874402 148875724 + 0 NA intron (ENSMUSG00000027447.6, intron 1 of 1) protein_coding-intron (ENSMUSG00000027447.6, intron 1 of 2) 388 ENSMUSG00000027447.6 ENSMUSG00000027447 ENSMUST00000144845 Cst3 protein_coding Interval_115114 chr4 90608778 90609154 + 0 NA Intergenic Intergenic -64596 ENSMUSG00000082502.1 ENSMUSG00000082502 ENSMUST00000117395 Gm12636 processed_pseudogene Interval_162008 chr8 124391944 124392312 + 0 NA intron (ENSMUSG00000050751.14, intron 1 of 6) protein_coding-intron (ENSMUSG00000050751.14, intron 1 of 6) 34890 ENSMUSG00000064664.1 ENSMUSG00000064664 ENSMUST00000082730 Gm24459 snRNA Interval_36619 chr12 51558399 51558653 + 0 NA Intergenic Intergenic -34853 ENSMUSG00000020953.17 ENSMUSG00000020953 ENSMUST00000220173 Coch protein_coding Interval_172423 chrX 18837339 18837585 + 0 NA Intergenic Intergenic -83342 ENSMUSG00000082757.1 ENSMUSG00000082757 ENSMUST00000118343 Gm6923 processed_pseudogene Interval_148618 chr7 83382345 83383290 + 0 NA exon (ENSMUSG00000109013.1, exon 1 of 1) TEC-exon (ENSMUSG00000109013.1, exon 1 of 1) 324 ENSMUSG00000109013.1 ENSMUSG00000109013 ENSMUST00000207369 Gm44723 TEC Interval_144743 chr7 27956115 27956414 + 0 NA Intergenic Intergenic -6501 ENSMUSG00000074243.4 ENSMUSG00000074243 ENSMUST00000118212 Gm10651 processed_pseudogene Interval_59341 chr15 51784765 51785276 + 0 NA Intergenic Intergenic 51237 ENSMUSG00000022312.11 ENSMUSG00000022312 ENSMUST00000228583 Eif3h protein_coding Interval_121809 chr5 8417002 8417793 + 0 NA intron (ENSMUSG00000002297.16, intron 2 of 11) protein_coding-intron (ENSMUSG00000002297.16, intron 2 of 11) 5272 ENSMUSG00000002297.16 ENSMUSG00000002297 ENSMUST00000198785 Dbf4 protein_coding Interval_80730 chr18 46631195 46631504 + 0 NA exon (ENSMUSG00000117780.1, exon 1 of 3) lincRNA-exon (ENSMUSG00000117780.1, exon 1 of 3) 542 ENSMUSG00000117780.1 ENSMUSG00000117780 ENSMUST00000236340 Gm3734 lincRNA Interval_151640 chr7 125619002 125619532 + 0 NA intron (ENSMUSG00000030745.9, intron 1 of 5) protein_coding-intron (ENSMUSG00000030745.9, intron 1 of 8) 15838 ENSMUSG00000030745.9 ENSMUSG00000030745 ENSMUST00000033000 Il21r protein_coding Interval_114863 chr4 86512355 86513378 + 0 NA intron (ENSMUSG00000028492.13, intron 1 of 2) protein_coding-intron (ENSMUSG00000028492.13, intron 1 of 3) 3714 ENSMUSG00000077597.1 ENSMUSG00000077597 ENSMUST00000104409 Gm26017 snRNA Interval_52453 chr14 46578062 46579221 + 0 NA intron (ENSMUSG00000085123.2, intron 1 of 3) lincRNA-intron (ENSMUSG00000085123.2, intron 1 of 3) 9342 ENSMUSG00000085123.2 ENSMUSG00000085123 ENSMUST00000151828 Rubie lincRNA Interval_134332 chr6 25307425 25308191 + 0 NA Intergenic Intergenic -107757 ENSMUSG00000089442.1 ENSMUSG00000089442 ENSMUST00000158817 Gm22529 snoRNA Interval_157372 chr8 69918818 69921048 + 0 NA intron (ENSMUSG00000036180.15, intron 3 of 12) protein_coding-intron (ENSMUSG00000036180.15, intron 3 of 12) -17221 ENSMUSG00000048967.16 ENSMUSG00000048967 ENSMUST00000152456 Yjefn3 protein_coding Interval_112100 chr4 34680235 34680818 + 0 NA intron (ENSMUSG00000028293.14, intron 1 of 5) protein_coding-intron (ENSMUSG00000028293.14, intron 2 of 7) -3353 ENSMUSG00000088338.1 ENSMUSG00000088338 ENSMUST00000157713 Gm22849 misc_RNA Interval_121184 chr4 153869057 153869482 + 0 NA Intergenic Intergenic -7115 ENSMUSG00000077519.1 ENSMUSG00000077519 ENSMUST00000104331 Gm25880 snoRNA Interval_51329 chr14 26485832 26486873 + 0 NA intron (ENSMUSG00000021870.17, intron 1 of 22) protein_coding-intron (ENSMUSG00000021870.17, intron 1 of 22) -11303 ENSMUSG00000065864.1 ENSMUSG00000065864 ENSMUST00000083930 Gm24031 snoRNA Interval_98295 chr2 150851284 150851502 + 0 NA promoter-TSS (ENSMUSG00000032046.15) protein_coding-promoter-TSS (ENSMUSG00000032046.15) -8823 ENSMUSG00000032046.15 ENSMUSG00000032046 ENSMUST00000129228 Abhd12 protein_coding Interval_137850 chr6 82919502 82920145 + 0 NA intron (ENSMUSG00000000627.15, intron 5 of 11) protein_coding-intron (ENSMUSG00000000627.15, intron 5 of 13) 19946 ENSMUSG00000000627.15 ENSMUSG00000000627 ENSMUST00000203271 Sema4f protein_coding Interval_155342 chr8 31934526 31934818 + 0 NA intron (ENSMUSG00000062991.9, intron 3 of 10) protein_coding-intron (ENSMUSG00000062991.9, intron 5 of 11) -15914 ENSMUSG00000118541.1 ENSMUSG00000118541 ENSMUST00000239000 AC132407.1 protein_coding Interval_14979 chr10 41655485 41655876 + 0 NA intron (ENSMUSG00000075225.15, intron 11 of 13) protein_coding-intron (ENSMUSG00000075225.15, intron 1 of 12) -15059 ENSMUSG00000093298.1 ENSMUSG00000093298 ENSMUST00000175557 Mir3473b miRNA Interval_125880 chr5 75363169 75364099 + 0 NA Intergenic Intergenic 8511 ENSMUSG00000088210.1 ENSMUSG00000088210 ENSMUST00000157585 Gm22084 snRNA Interval_67110 chr16 43298462 43298711 + 0 NA intron (ENSMUSG00000022708.16, intron 6 of 7) protein_coding-intron (ENSMUSG00000022708.16, intron 1 of 8) 9695 ENSMUSG00000102967.1 ENSMUSG00000102967 ENSMUST00000192064 Gm37946 TEC Interval_95934 chr2 118544302 118544784 + 0 NA promoter-TSS (ENSMUSG00000040093.16) protein_coding-promoter-TSS (ENSMUSG00000040093.16) 773 ENSMUSG00000040093.16 ENSMUSG00000040093 ENSMUST00000138342 Bmf protein_coding Interval_157497 chr8 70893379 70894328 + 0 NA TTS (ENSMUSG00000045128.9) protein_coding-TTS (ENSMUSG00000045128.9) -1096 ENSMUSG00000000792.2 ENSMUSG00000000792 ENSMUST00000000809 Slc5a5 protein_coding Interval_64341 chr16 10627694 10629742 + 0 NA intron (ENSMUSG00000068663.14, intron 13 of 22) protein_coding-intron (ENSMUSG00000068663.14, intron 13 of 20) 54821 ENSMUSG00000087384.1 ENSMUSG00000087384 ENSMUST00000126849 Gm15558 antisense Interval_52275 chr14 41301233 41302098 + 0 NA Intergenic Intergenic 7978 ENSMUSG00000091808.1 ENSMUSG00000091808 ENSMUST00000171502 Gm9671 unprocessed_pseudogene Interval_4887 chr1 81516083 81516996 + 0 NA Intergenic Intergenic 5802 ENSMUSG00000104029.1 ENSMUSG00000104029 ENSMUST00000192484 Gm37210 TEC Interval_21660 chr11 3517028 3518056 + 0 NA TTS (ENSMUSG00000020439.17) protein_coding-TTS (ENSMUSG00000020439.17) 2840 ENSMUSG00000075702.9 ENSMUSG00000075702 ENSMUST00000094469 Selenom protein_coding Interval_72767 chr17 32042767 32043843 + 0 NA intron (ENSMUSG00000058392.13, intron 1 of 11) protein_coding-intron (ENSMUSG00000058392.13, intron 1 of 15) 6895 ENSMUSG00000058392.13 ENSMUSG00000058392 ENSMUST00000126602 Rrp1b protein_coding Interval_4091 chr1 67987074 67988246 + 0 NA Intergenic Intergenic 13984 ENSMUSG00000096031.1 ENSMUSG00000096031 ENSMUST00000178954 Gm23189 miRNA Interval_92456 chr2 59823688 59824385 + 0 NA intron (ENSMUSG00000035168.16, intron 18 of 25) protein_coding-intron (ENSMUSG00000035168.16, intron 19 of 26) 17968 ENSMUSG00000035168.16 ENSMUSG00000035168 ENSMUST00000147650 Tanc1 protein_coding Interval_81985 chr18 66842003 66842341 + 0 NA Intergenic Intergenic 18334 ENSMUSG00000047259.3 ENSMUSG00000047259 ENSMUST00000057942 Mc4r protein_coding Interval_124960 chr5 62227641 62228111 + 0 NA Intergenic Intergenic -95392 ENSMUSG00000077228.1 ENSMUSG00000077228 ENSMUST00000104040 Gm22273 snoRNA Interval_5764 chr1 91577896 91579214 + 0 NA Intergenic Intergenic -32851 ENSMUSG00000101705.1 ENSMUSG00000101705 ENSMUST00000188800 Gm28380 lincRNA Interval_96352 chr2 121909964 121910202 + 0 NA intron (ENSMUSG00000060227.15, intron 6 of 7) protein_coding-intron (ENSMUSG00000060227.15, intron 6 of 9) 11276 ENSMUSG00000060227.15 ENSMUSG00000060227 ENSMUST00000136023 Casc4 protein_coding Interval_42306 chr13 11947385 11947596 + 0 NA intron (ENSMUSG00000021313.16, intron 1 of 2) protein_coding-intron (ENSMUSG00000021313.16, intron 1 of 104) 7932 ENSMUSG00000098110.1 ENSMUSG00000098110 ENSMUST00000182176 Gm26956 processed_pseudogene Interval_171825 chr9 121466975 121467633 + 0 NA intron (ENSMUSG00000032536.12, intron 16 of 17) protein_coding-intron (ENSMUSG00000032536.12, intron 14 of 15) 27206 ENSMUSG00000032532.7 ENSMUSG00000032532 ENSMUST00000217581 Cck protein_coding Interval_51108 chr14 23371866 23372521 + 0 NA intron (ENSMUSG00000063142.15, intron 21 of 28) protein_coding-intron (ENSMUSG00000063142.15, intron 20 of 28) 51049 ENSMUSG00000114803.1 ENSMUSG00000114803 ENSMUST00000225611 Gm46443 processed_pseudogene Interval_29602 chr11 85295935 85298308 + 0 NA TTS (ENSMUSG00000088136.1) misc_RNA-TTS (ENSMUSG00000088136.1) 628 ENSMUSG00000088136.1 ENSMUSG00000088136 ENSMUST00000157511 Gm22587 misc_RNA Interval_116792 chr4 117318078 117318297 + 0 NA intron (ENSMUSG00000028677.19, intron 2 of 2) protein_coding-intron (ENSMUSG00000028677.19, intron 2 of 14) 22043 ENSMUSG00000085749.1 ENSMUSG00000085749 ENSMUST00000139618 Gm12843 antisense Interval_119984 chr4 141238942 141239894 + 0 NA promoter-TSS (ENSMUSG00000028919.11) protein_coding-promoter-TSS (ENSMUSG00000028919.11) 35 ENSMUSG00000103366.1 ENSMUSG00000103366 ENSMUST00000195673 C630004L07Rik TEC Interval_76473 chr17 80441421 80442208 + 0 NA intron (ENSMUSG00000024241.7, intron 8 of 19) protein_coding-intron (ENSMUSG00000024241.7, intron 8 of 21) 38639 ENSMUSG00000024241.7 ENSMUSG00000024241 ENSMUST00000234841 Sos1 protein_coding Interval_73556 chr17 40401407 40402041 + 0 NA Intergenic Intergenic -16943 ENSMUSG00000117162.1 ENSMUSG00000117162 ENSMUST00000233579 Gm49840 processed_pseudogene Interval_144028 chr7 19053453 19055207 + 0 NA promoter-TSS (ENSMUSG00000040866.13) protein_coding-promoter-TSS (ENSMUSG00000040866.13) -3065 ENSMUSG00000040866.13 ENSMUSG00000040866 ENSMUST00000144991 Rsph6a protein_coding Interval_7076 chr1 125434748 125436319 + 0 NA promoter-TSS (ENSMUSG00000026341.16) protein_coding-promoter-TSS (ENSMUSG00000026341.16) -52 ENSMUSG00000026341.16 ENSMUSG00000026341 ENSMUST00000188827 Actr3 protein_coding Interval_138282 chr6 86871732 86871945 + 0 NA intron (ENSMUSG00000057230.14, intron 1 of 2) protein_coding-intron (ENSMUSG00000057230.14, intron 1 of 19) -1948 ENSMUSG00000108152.1 ENSMUSG00000108152 ENSMUST00000205007 Gm44152 TEC Interval_57907 chr15 25311651 25312747 + 0 NA intron (ENSMUSG00000115355.1, intron 2 of 2) lincRNA-intron (ENSMUSG00000115355.1, intron 2 of 4) 20449 ENSMUSG00000115355.1 ENSMUSG00000115355 ENSMUST00000228450 4930445E18Rik lincRNA Interval_32075 chr11 105125751 105127148 + 0 NA promoter-TSS (ENSMUSG00000020691.13) protein_coding-promoter-TSS (ENSMUSG00000020691.13) -11114 ENSMUSG00000020691.13 ENSMUSG00000020691 ENSMUST00000155460 Mettl2 protein_coding Interval_100969 chr2 173730511 173731573 + 0 NA Intergenic Intergenic 11627 ENSMUSG00000057047.5 ENSMUSG00000057047 ENSMUST00000073081 1700010B08Rik protein_coding Interval_74517 chr17 52711442 52712260 + 0 NA intron (ENSMUSG00000035580.10, intron 1 of 15) protein_coding-intron (ENSMUSG00000035580.10, intron 1 of 15) -109191 ENSMUSG00000098552.1 ENSMUSG00000098552 ENSMUST00000183438 Gm27217 antisense Interval_61758 chr15 83886193 83886492 + 0 NA intron (ENSMUSG00000022441.17, intron 26 of 31) protein_coding-intron (ENSMUSG00000022441.17, intron 9 of 14) 60257 ENSMUSG00000022441.17 ENSMUSG00000022441 ENSMUST00000122836 Efcab6 protein_coding Interval_134273 chr6 24373061 24373373 + 0 NA Intergenic Intergenic 141850 ENSMUSG00000046192.4 ENSMUSG00000046192 ENSMUST00000052277 Iqub protein_coding Interval_89172 chr2 17844677 17845094 + 0 NA Intergenic Intergenic -46901 ENSMUSG00000081851.1 ENSMUSG00000081851 ENSMUST00000120245 Gm13323 processed_pseudogene Interval_164603 chr9 39949138 39949326 + 0 NA TTS (ENSMUSG00000043331.6) protein_coding-TTS (ENSMUSG00000043331.6) 2814 ENSMUSG00000043331.6 ENSMUSG00000043331 ENSMUST00000054067 Olfr975 protein_coding Interval_70673 chr17 12953435 12953732 + 0 NA intron (ENSMUSG00000023832.14, intron 3 of 7) protein_coding-intron (ENSMUSG00000023832.14, intron 3 of 8) 7137 ENSMUSG00000023832.14 ENSMUSG00000023832 ENSMUST00000159358 Acat2 protein_coding Interval_11972 chr1 187917983 187918599 + 0 NA intron (ENSMUSG00000026610.13, intron 3 of 3) protein_coding-intron (ENSMUSG00000026610.13, intron 2 of 7) 90699 ENSMUSG00000103577.1 ENSMUSG00000103577 ENSMUST00000195397 9330162B11Rik antisense Interval_170637 chr9 109808197 109809331 + 0 NA Intergenic Intergenic -3516 ENSMUSG00000050074.12 ENSMUSG00000050074 ENSMUST00000118732 Spink8 protein_coding Interval_145341 chr7 34118777 34118968 + 0 NA exon (ENSMUSG00000036459.15, exon 1 of 4) protein_coding-exon (ENSMUSG00000036459.15, exon 1 of 4) 9165 ENSMUSG00000036459.15 ENSMUSG00000036459 ENSMUST00000140911 Wtip protein_coding Interval_16836 chr10 69005233 69005720 + 0 NA Intergenic Intergenic 28412 ENSMUSG00000112331.1 ENSMUSG00000112331 ENSMUST00000219854 Gm33035 lincRNA Interval_39850 chr12 99058802 99059545 + 0 NA intron (ENSMUSG00000114089.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000114089.1, intron 1 of 1) 4285 ENSMUSG00000114089.1 ENSMUSG00000114089 ENSMUST00000220675 Gm47116 lincRNA Interval_30547 chr11 95046670 95047524 + 0 NA intron (ENSMUSG00000001507.16, intron 24 of 25) protein_coding-intron (ENSMUSG00000001507.16, intron 23 of 25) -6222 ENSMUSG00000038967.13 ENSMUSG00000038967 ENSMUST00000155857 Pdk2 protein_coding Interval_80590 chr18 44461126 44461353 + 0 NA intron (ENSMUSG00000071856.10, intron 11 of 16) protein_coding-intron (ENSMUSG00000071856.10, intron 13 of 18) 80737 ENSMUSG00000024472.9 ENSMUSG00000024472 ENSMUST00000025350 Dcp2 protein_coding Interval_37360 chr12 65476421 65476818 + 0 NA Intergenic Intergenic -53633 ENSMUSG00000088441.1 ENSMUSG00000088441 ENSMUST00000157816 Gm25599 snRNA Interval_135562 chr6 40435099 40436441 + 0 NA intron (ENSMUSG00000037172.14, intron 1 of 1) protein_coding-intron (ENSMUSG00000037172.14, intron 1 of 7) -3318 ENSMUSG00000037159.11 ENSMUSG00000037159 ENSMUST00000141490 Wee2 protein_coding Interval_51739 chr14 31798653 31799294 + 0 NA intron (ENSMUSG00000014496.8, intron 1 of 27) protein_coding-intron (ENSMUSG00000014496.8, intron 1 of 27) -3896 ENSMUSG00000115812.1 ENSMUSG00000115812 ENSMUST00000228722 Gm49309 transcribed_processed_pseudogene Interval_118812 chr4 133840634 133841717 + 0 NA Intergenic Intergenic 24755 ENSMUSG00000084789.1 ENSMUSG00000084789 ENSMUST00000129875 Gm12974 lincRNA Interval_48037 chr13 95468561 95469306 + 0 NA Intergenic Intergenic 9788 ENSMUSG00000021679.4 ENSMUSG00000021679 ENSMUST00000022186 S100z protein_coding Interval_43137 chr13 24576279 24576974 + 0 NA intron (ENSMUSG00000036006.20, intron 1 of 13) protein_coding-intron (ENSMUSG00000036006.20, intron 1 of 13) 28141 ENSMUSG00000085603.3 ENSMUSG00000085603 ENSMUST00000127863 Gm11346 transcribed_processed_pseudogene Interval_133858 chr6 13607217 13608554 + 0 NA promoter-TSS (ENSMUSG00000029569.9) protein_coding-promoter-TSS (ENSMUSG00000029569.9) 159 ENSMUSG00000029569.9 ENSMUSG00000029569 ENSMUST00000138637 Tmem168 protein_coding Interval_132891 chr5 148553981 148555044 + 0 NA promoter-TSS (ENSMUSG00000106899.1) TEC-promoter-TSS (ENSMUSG00000106899.1) -651 ENSMUSG00000106899.1 ENSMUSG00000106899 ENSMUST00000202969 1700013A02Rik TEC Interval_79520 chr18 32682757 32683418 + 0 NA Intergenic Intergenic -61031 ENSMUSG00000087715.1 ENSMUSG00000087715 ENSMUST00000157090 Gm25826 snoRNA Interval_59435 chr15 53139500 53139726 + 0 NA intron (ENSMUSG00000061731.9, intron 1 of 10) protein_coding-intron (ENSMUSG00000061731.9, intron 1 of 10) -31745 ENSMUSG00000061731.9 ENSMUSG00000061731 ENSMUST00000140798 Ext1 protein_coding Interval_105037 chr3 79965716 79968057 + 0 NA Intergenic Intergenic -80080 ENSMUSG00000102191.1 ENSMUSG00000102191 ENSMUST00000195082 Gm36569 antisense Interval_100612 chr2 170459255 170460259 + 0 NA Intergenic Intergenic 4062 ENSMUSG00000084067.3 ENSMUSG00000084067 ENSMUST00000120455 Gm14269 processed_pseudogene Interval_44023 chr13 39923220 39923431 + 0 NA Intergenic Intergenic -38944 ENSMUSG00000114957.1 ENSMUSG00000114957 ENSMUST00000224937 Gm47316 lincRNA Interval_130743 chr5 130088115 130088654 + 0 NA intron (ENSMUSG00000034118.15, intron 1 of 5) protein_coding-intron (ENSMUSG00000034118.15, intron 1 of 5) -5205 ENSMUSG00000034118.15 ENSMUSG00000034118 ENSMUST00000128335 Tpst1 protein_coding Interval_2308 chr1 37950828 37951149 + 0 NA exon (ENSMUSG00000087374.1, exon 4 of 6) antisense-exon (ENSMUSG00000087374.1, exon 4 of 6) -1989 ENSMUSG00000026085.11 ENSMUSG00000026085 ENSMUST00000114894 Lyg1 protein_coding Interval_104307 chr3 63173264 63174445 + 0 NA promoter-TSS (ENSMUSG00000102270.1) processed_pseudogene-promoter-TSS (ENSMUSG00000102270.1) 7 ENSMUSG00000102270.1 ENSMUSG00000102270 ENSMUST00000193000 Gm8388 processed_pseudogene Interval_18981 chr10 93549115 93550538 + 0 NA promoter-TSS (ENSMUSG00000036168.15) protein_coding-promoter-TSS (ENSMUSG00000036168.15) -5055 ENSMUSG00000036168.15 ENSMUSG00000036168 ENSMUST00000128786 Ccdc38 protein_coding Interval_139668 chr6 106545569 106545787 + 0 NA intron (ENSMUSG00000064293.14, intron 3 of 15) protein_coding-intron (ENSMUSG00000064293.14, intron 10 of 15) -109825 ENSMUSG00000064293.14 ENSMUSG00000064293 ENSMUST00000142626 Cntn4 protein_coding Interval_167700 chr9 72135456 72136102 + 0 NA Intergenic Intergenic 7192 ENSMUSG00000099253.1 ENSMUSG00000099253 ENSMUST00000184700 Gm7863 processed_pseudogene Interval_112300 chr4 40204206 40204445 + 0 NA TTS (ENSMUSG00000040296.15) protein_coding-TTS (ENSMUSG00000040296.15) 35500 ENSMUSG00000040296.15 ENSMUSG00000040296 ENSMUST00000149539 Ddx58 protein_coding Interval_102325 chr3 21935548 21937182 + 0 NA Intergenic Intergenic 62103 ENSMUSG00000106321.1 ENSMUSG00000106321 ENSMUST00000196313 Gm43674 lincRNA Interval_73230 chr17 35688450 35690560 + 0 NA TTS (ENSMUSG00000003534.17) protein_coding-TTS (ENSMUSG00000003534.17) 9804 ENSMUSG00000093921.1 ENSMUSG00000093921 ENSMUST00000177607 Gm23864 snRNA Interval_73213 chr17 35600854 35602485 + 0 NA promoter-TSS (ENSMUSG00000090509.2) protein_coding-promoter-TSS (ENSMUSG00000090509.2) 91 ENSMUSG00000090509.2 ENSMUSG00000090509 ENSMUST00000171166 Sfta2 protein_coding Interval_152582 chr7 134781985 134782832 + 0 NA exon (ENSMUSG00000058325.6, exon 20 of 52) protein_coding-exon (ENSMUSG00000058325.6, exon 20 of 52) 111721 ENSMUSG00000058325.6 ENSMUSG00000058325 ENSMUST00000210121 Dock1 protein_coding Interval_99603 chr2 163491307 163491555 + 0 NA promoter-TSS (ENSMUSG00000078949.2) protein_coding-promoter-TSS (ENSMUSG00000078949.2) -887 ENSMUSG00000078949.2 ENSMUSG00000078949 ENSMUST00000109416 R3hdml protein_coding Interval_84466 chr19 11316628 11317644 + 0 NA Intergenic Intergenic -2682 ENSMUSG00000099398.1 ENSMUSG00000099398 ENSMUST00000187467 Ms4a14 protein_coding Interval_168979 chr9 89948352 89948591 + 0 NA intron (ENSMUSG00000032356.12, intron 3 of 26) protein_coding-intron (ENSMUSG00000032356.12, intron 3 of 26) 38559 ENSMUSG00000032356.12 ENSMUSG00000032356 ENSMUST00000190073 Rasgrf1 protein_coding Interval_62856 chr15 97449825 97450224 + 0 NA Intergenic Intergenic 88822 ENSMUSG00000044250.8 ENSMUSG00000044250 ENSMUST00000226495 Pced1b protein_coding Interval_130928 chr5 134103803 134104043 + 0 NA intron (ENSMUSG00000015944.9, intron 1 of 8) protein_coding-intron (ENSMUSG00000015944.9, intron 1 of 8) 3918 ENSMUSG00000015944.9 ENSMUSG00000015944 ENSMUST00000140240 Castor2 protein_coding Interval_69464 chr16 93717330 93718119 + 0 NA intron (ENSMUSG00000022946.10, intron 1 of 1) protein_coding-intron (ENSMUSG00000022946.10, intron 2 of 36) 34465 ENSMUSG00000022947.8 ENSMUSG00000022947 ENSMUST00000231302 Cbr3 protein_coding Interval_92478 chr2 60032204 60032531 + 0 NA intron (ENSMUSG00000026987.16, intron 1 of 34) protein_coding-intron (ENSMUSG00000026987.16, intron 1 of 34) -4774 ENSMUSG00000085975.1 ENSMUSG00000085975 ENSMUST00000153675 Gm13572 lincRNA Interval_116952 chr4 118415790 118416067 + 0 NA TTS (ENSMUSG00000006392.16) protein_coding-TTS (ENSMUSG00000006392.16) 5580 ENSMUSG00000006392.16 ENSMUSG00000006392 ENSMUST00000135201 Med8 protein_coding Interval_171596 chr9 119444456 119445941 + 0 NA promoter-TSS (ENSMUSG00000097504.1) lincRNA-promoter-TSS (ENSMUSG00000097504.1) 222 ENSMUSG00000042787.15 ENSMUSG00000042787 ENSMUST00000214462 Exog protein_coding Interval_39862 chr12 99180429 99181360 + 0 NA Intergenic Intergenic -18086 ENSMUSG00000113210.1 ENSMUSG00000113210 ENSMUST00000223511 4930474N09Rik lincRNA Interval_11224 chr1 180283864 180284790 + 0 NA Intergenic Intergenic 27898 ENSMUSG00000102923.1 ENSMUSG00000102923 ENSMUST00000192164 Gm31728 antisense Interval_34581 chr12 5422286 5422527 + 0 NA Intergenic Intergenic 10765 ENSMUSG00000037735.7 ENSMUSG00000037735 ENSMUST00000163627 2810032G03Rik lincRNA Interval_1140 chr1 16068055 16068714 + 0 NA intron (ENSMUSG00000067795.13, intron 4 of 4) protein_coding-intron (ENSMUSG00000067795.13, intron 3 of 3) 15049 ENSMUSG00000100652.1 ENSMUSG00000100652 ENSMUST00000185778 Gm7634 processed_pseudogene Interval_24881 chr11 40719276 40719530 + 0 NA intron (ENSMUSG00000020330.16, intron 7 of 17) protein_coding-intron (ENSMUSG00000020330.16, intron 7 of 17) 14013 ENSMUSG00000020330.16 ENSMUSG00000020330 ENSMUST00000152749 Hmmr protein_coding Interval_95626 chr2 113058846 113059180 + 0 NA intron (ENSMUSG00000057378.15, intron 1 of 103) protein_coding-intron (ENSMUSG00000057378.15, intron 1 of 102) -226719 ENSMUSG00000041255.2 ENSMUSG00000041255 ENSMUST00000040856 Tmco5b protein_coding Interval_99090 chr2 157116549 157117519 + 0 NA intron (ENSMUSG00000027639.16, intron 6 of 16) protein_coding-intron (ENSMUSG00000027639.16, intron 6 of 15) -6422 ENSMUSG00000027639.16 ENSMUSG00000027639 ENSMUST00000152866 Samhd1 protein_coding Interval_71899 chr17 26868763 26869025 + 0 NA intron (ENSMUSG00000078838.3, intron 1 of 2) lincRNA-intron (ENSMUSG00000078838.3, intron 1 of 1) 7473 ENSMUSG00000092539.2 ENSMUSG00000092539 ENSMUST00000172664 Gm20468 lincRNA Interval_69807 chr16 96729944 96730500 + 0 NA intron (ENSMUSG00000117000.1, intron 1 of 1) protein_coding-intron (ENSMUSG00000050272.10, intron 11 of 32) 6710 ENSMUSG00000117000.1 ENSMUSG00000117000 ENSMUST00000233368 Gm32509 processed_transcript Interval_90048 chr2 27514423 27517052 + 0 NA intron (ENSMUSG00000026917.15, intron 1 of 4) protein_coding-intron (ENSMUSG00000026917.15, intron 1 of 13) 580 ENSMUSG00000026917.15 ENSMUSG00000026917 ENSMUST00000125088 Wdr5 protein_coding Interval_157788 chr8 73200573 73202239 + 0 NA intron (ENSMUSG00000004383.18, intron 3 of 15) protein_coding-intron (ENSMUSG00000004383.18, intron 2 of 14) -26148 ENSMUSG00000089447.1 ENSMUSG00000089447 ENSMUST00000158822 Gm22532 snoRNA Interval_154200 chr8 13393000 13393395 + 0 NA TTS (ENSMUSG00000110311.1) TEC-TTS (ENSMUSG00000110311.1) 2091 ENSMUSG00000110311.1 ENSMUSG00000110311 ENSMUST00000211331 Gm45410 TEC Interval_23307 chr11 21293999 21294400 + 0 NA intron (ENSMUSG00000020128.15, intron 9 of 22) protein_coding-intron (ENSMUSG00000020128.15, intron 9 of 22) -1361 ENSMUSG00000084048.1 ENSMUSG00000084048 ENSMUST00000120479 Gm12042 processed_pseudogene Interval_48787 chr13 103302483 103303044 + 0 NA intron (ENSMUSG00000034751.17, intron 1 of 3) protein_coding-intron (ENSMUSG00000034751.17, intron 1 of 4) -53489 ENSMUSG00000047643.5 ENSMUSG00000047643 ENSMUST00000052030 Gm5454 processed_pseudogene Interval_161575 chr8 121300659 121301796 + 0 NA intron (ENSMUSG00000097384.1, intron 1 of 1) protein_coding-intron (ENSMUSG00000092329.1, intron 1 of 15) 55609 ENSMUSG00000097384.1 ENSMUSG00000097384 ENSMUST00000181200 Gm26815 lincRNA Interval_130878 chr5 132984998 132985499 + 0 NA Intergenic Intergenic 183570 ENSMUSG00000088123.1 ENSMUSG00000088123 ENSMUST00000157498 Gm25722 misc_RNA Interval_118598 chr4 132701782 132702028 + 0 NA intron (ENSMUSG00000028886.15, intron 10 of 15) protein_coding-intron (ENSMUSG00000028886.15, intron 9 of 14) 30623 ENSMUSG00000037752.4 ENSMUSG00000037752 ENSMUST00000143642 Xkr8 protein_coding Interval_77866 chr18 4811978 4812273 + 0 NA promoter-TSS (ENSMUSG00000097043.1) lincRNA-promoter-TSS (ENSMUSG00000097043.1) -361 ENSMUSG00000097043.1 ENSMUSG00000097043 ENSMUST00000180904 Gm10556 lincRNA Interval_30390 chr11 94052651 94054639 + 0 NA intron (ENSMUSG00000020859.16, intron 2 of 15) protein_coding-intron (ENSMUSG00000020859.16, intron 2 of 26) 10075 ENSMUSG00000020859.16 ENSMUSG00000020859 ENSMUST00000153076 Spag9 protein_coding Interval_131812 chr5 140042040 140042941 + 0 NA intron (ENSMUSG00000029554.15, intron 6 of 6) protein_coding-intron (ENSMUSG00000029554.15, intron 17 of 17) -10314 ENSMUSG00000105453.1 ENSMUSG00000105453 ENSMUST00000198772 Gm43702 TEC Interval_23709 chr11 24980663 24980879 + 0 NA Intergenic Intergenic -54721 ENSMUSG00000087145.7 ENSMUSG00000087145 ENSMUST00000126063 Gm12665 lincRNA Interval_97353 chr2 135323583 135324403 + 0 NA intron (ENSMUSG00000051177.16, intron 13 of 32) protein_coding-intron (ENSMUSG00000051177.16, intron 13 of 31) -108377 ENSMUSG00000085247.1 ENSMUSG00000085247 ENSMUST00000138303 4930545L23Rik antisense Interval_101666 chr3 8717240 8718508 + 0 NA Intergenic Intergenic 18486 ENSMUSG00000103346.1 ENSMUSG00000103346 ENSMUST00000195781 C230057A21Rik lincRNA Interval_68602 chr16 80736025 80736241 + 0 NA Intergenic Intergenic 9467 ENSMUSG00000116559.1 ENSMUSG00000116559 ENSMUST00000231837 Gm19867 processed_pseudogene Interval_61764 chr15 83955658 83955911 + 0 NA intron (ENSMUSG00000022441.17, intron 10 of 31) protein_coding-intron (ENSMUSG00000022441.17, intron 10 of 31) -9185 ENSMUSG00000022441.17 ENSMUSG00000022441 ENSMUST00000122836 Efcab6 protein_coding Interval_100146 chr2 167324681 167325070 + 0 NA intron (ENSMUSG00000017929.13, intron 1 of 8) protein_coding-intron (ENSMUSG00000017929.13, intron 1 of 8) -11020 ENSMUSG00000017929.13 ENSMUSG00000017929 ENSMUST00000133557 B4galt5 protein_coding Interval_124911 chr5 60264192 60264553 + 0 NA Intergenic Intergenic 32889 ENSMUSG00000087034.4 ENSMUSG00000087034 ENSMUST00000117165 Cbfa2t2-ps1 processed_pseudogene Interval_36362 chr12 42016859 42018152 + 0 NA promoter-TSS (ENSMUSG00000113370.1) lincRNA-promoter-TSS (ENSMUSG00000113370.1) -375 ENSMUSG00000113979.1 ENSMUSG00000113979 ENSMUST00000222924 Gm47012 processed_pseudogene Interval_129597 chr5 121212183 121213321 + 0 NA Intergenic Intergenic 6028 ENSMUSG00000029614.13 ENSMUSG00000029614 ENSMUST00000138621 Rpl6 protein_coding Interval_165477 chr9 48538039 48539151 + 0 NA Intergenic Intergenic -31535 ENSMUSG00000080401.1 ENSMUSG00000080401 ENSMUST00000116751 Gm23653 miRNA Interval_16731 chr10 67713846 67714032 + 0 NA intron (ENSMUSG00000112619.1, intron 2 of 2) lincRNA-intron (ENSMUSG00000112619.1, intron 2 of 2) 4100 ENSMUSG00000112619.1 ENSMUSG00000112619 ENSMUST00000218164 1700030E10Rik lincRNA Interval_1035 chr1 14257315 14257533 + 0 NA intron (ENSMUSG00000025932.14, intron 6 of 16) protein_coding-intron (ENSMUSG00000025932.14, intron 7 of 17) -1434 ENSMUSG00000102588.1 ENSMUSG00000102588 ENSMUST00000193605 Gm37444 TEC Interval_98483 chr2 152723911 152724377 + 0 NA Intergenic Intergenic -12107 ENSMUSG00000042745.9 ENSMUSG00000042745 ENSMUST00000109824 Id1 protein_coding Interval_72466 chr17 29988886 29990011 + 0 NA Intergenic Intergenic -5307 ENSMUSG00000089524.1 ENSMUSG00000089524 ENSMUST00000158899 Gm22327 snoRNA Interval_76512 chr17 80682369 80684437 + 0 NA intron (ENSMUSG00000024242.15, intron 1 of 1) protein_coding-intron (ENSMUSG00000024242.15, intron 1 of 33) -44728 ENSMUSG00000054957.5 ENSMUSG00000054957 ENSMUST00000068277 Gm9959 pseudogene Interval_100344 chr2 168538557 168539743 + 0 NA intron (ENSMUSG00000027544.16, intron 3 of 6) protein_coding-intron (ENSMUSG00000027544.16, intron 3 of 6) 62505 ENSMUSG00000027544.16 ENSMUSG00000027544 ENSMUST00000138546 Nfatc2 protein_coding Interval_67172 chr16 44130156 44130653 + 0 NA intron (ENSMUSG00000052459.13, intron 1 of 3) protein_coding-intron (ENSMUSG00000052459.13, intron 1 of 14) 9301 ENSMUSG00000052459.13 ENSMUSG00000052459 ENSMUST00000147025 Atp6v1a protein_coding Interval_39357 chr12 86890665 86891063 + 0 NA Intergenic Intergenic -6066 ENSMUSG00000034168.7 ENSMUSG00000034168 ENSMUST00000038422 Irf2bpl protein_coding Interval_151782 chr7 126632737 126633161 + 0 NA Intergenic Intergenic -2088 ENSMUSG00000030717.9 ENSMUSG00000030717 ENSMUST00000191413 Nupr1 protein_coding Interval_132393 chr5 144685242 144686025 + 0 NA Intergenic Intergenic 38164 ENSMUSG00000082524.3 ENSMUSG00000082524 ENSMUST00000121256 Gm6272 processed_pseudogene Interval_169153 chr9 94661370 94662817 + 0 NA Intergenic Intergenic 6725 ENSMUSG00000101595.1 ENSMUSG00000101595 ENSMUST00000188551 Gm29395 lincRNA Interval_102401 chr3 24013652 24013909 + 0 NA intron (ENSMUSG00000102758.3, intron 10 of 13) protein_coding-intron (ENSMUSG00000102758.3, intron 10 of 13) -319288 ENSMUSG00000057036.7 ENSMUSG00000057036 ENSMUST00000077389 Gm7536 processed_pseudogene Interval_9268 chr1 155686839 155687074 + 0 NA promoter-TSS (ENSMUSG00000033701.13) protein_coding-promoter-TSS (ENSMUSG00000033701.13) 64728 ENSMUSG00000026468.14 ENSMUSG00000026468 ENSMUST00000195275 Lhx4 protein_coding Interval_55891 chr14 101829421 101830153 + 0 NA intron (ENSMUSG00000033060.16, intron 1 of 4) protein_coding-intron (ENSMUSG00000033060.16, intron 3 of 30) -10720 ENSMUSG00000033060.16 ENSMUSG00000033060 ENSMUST00000160038 Lmo7 protein_coding Interval_118884 chr4 134251075 134252712 + 0 NA exon (ENSMUSG00000050105.5, exon 2 of 2) protein_coding-exon (ENSMUSG00000050105.5, exon 2 of 2) 1130 ENSMUSG00000050105.5 ENSMUSG00000050105 ENSMUST00000138366 Grrp1 protein_coding Interval_66692 chr16 36205356 36206418 + 0 NA Intergenic Intergenic -3390 ENSMUSG00000078097.3 ENSMUSG00000078097 ENSMUST00000133732 Gm10913 processed_pseudogene Interval_106897 chr3 101667194 101668177 + 0 NA Intergenic Intergenic -24104 ENSMUSG00000106070.1 ENSMUSG00000106070 ENSMUST00000196442 Gm43135 lincRNA Interval_45291 chr13 54077789 54078001 + 0 NA intron (ENSMUSG00000021474.9, intron 1 of 10) protein_coding-intron (ENSMUSG00000021474.9, intron 1 of 10) -8051 ENSMUSG00000021474.9 ENSMUSG00000021474 ENSMUST00000222285 Sfxn1 protein_coding Interval_124627 chr5 52548018 52548302 + 0 NA intron (ENSMUSG00000039252.11, intron 5 of 6) protein_coding-intron (ENSMUSG00000039252.11, intron 5 of 6) -2816 ENSMUSG00000104974.1 ENSMUSG00000104974 ENSMUST00000197351 Gm43686 TEC Interval_107323 chr3 105825590 105826407 + 0 NA Intergenic Intergenic 10458 ENSMUSG00000104835.4 ENSMUSG00000104835 ENSMUST00000196002 Gm5547 lincRNA Interval_24128 chr11 30614038 30614390 + 0 NA intron (ENSMUSG00000060923.5, intron 3 of 3) protein_coding-intron (ENSMUSG00000060923.5, intron 3 of 3) 35373 ENSMUSG00000060923.5 ENSMUSG00000060923 ENSMUST00000074613 Acyp2 protein_coding Interval_58538 chr15 35920063 35920644 + 0 NA intron (ENSMUSG00000037646.10, intron 58 of 61) protein_coding-intron (ENSMUSG00000037646.10, intron 58 of 61) 16816 ENSMUSG00000014313.15 ENSMUSG00000014313 ENSMUST00000227231 Cox6c protein_coding Interval_112385 chr4 40970216 40972506 + 0 NA intron (ENSMUSG00000028423.15, intron 1 of 23) protein_coding-intron (ENSMUSG00000028423.15, intron 1 of 15) -22334 ENSMUSG00000092862.1 ENSMUSG00000092862 ENSMUST00000175121 Mir3094 miRNA Interval_165656 chr9 50720388 50721583 + 0 NA intron (ENSMUSG00000032064.17, intron 2 of 20) protein_coding-intron (ENSMUSG00000032064.17, intron 1 of 19) -23214 ENSMUSG00000032064.17 ENSMUSG00000032064 ENSMUST00000118707 Dixdc1 protein_coding Interval_111040 chr4 11419451 11420114 + 0 NA TTS (ENSMUSG00000082255.1) processed_pseudogene-TTS (ENSMUSG00000082255.1) 982 ENSMUSG00000082255.1 ENSMUSG00000082255 ENSMUST00000119177 Gm11822 processed_pseudogene Interval_57349 chr15 9363214 9363432 + 0 NA TTS (ENSMUSG00000049152.11) protein_coding-TTS (ENSMUSG00000049152.11) 27734 ENSMUSG00000049152.11 ENSMUSG00000049152 ENSMUST00000144755 Ugt3a2 protein_coding Interval_154977 chr8 25440012 25440752 + 0 NA promoter-TSS (ENSMUSG00000110017.1) lincRNA-promoter-TSS (ENSMUSG00000110017.1) -236 ENSMUSG00000110017.1 ENSMUSG00000110017 ENSMUST00000211157 Gm45237 lincRNA Interval_58454 chr15 34742440 34743656 + 0 NA Intergenic Intergenic 67975 ENSMUSG00000115526.1 ENSMUSG00000115526 ENSMUST00000228853 4930413F20Rik antisense Interval_125702 chr5 73367101 73369385 + 0 NA Intergenic Intergenic -22406 ENSMUSG00000107272.1 ENSMUSG00000107272 ENSMUST00000202586 Gm34583 transcribed_processed_pseudogene Interval_56376 chr14 118221030 118221315 + 0 NA Intergenic Intergenic 8874 ENSMUSG00000115774.1 ENSMUSG00000115774 ENSMUST00000227956 4933431J24Rik lincRNA Interval_88731 chr2 10066149 10066433 + 0 NA intron (ENSMUSG00000025781.14, intron 3 of 5) protein_coding-intron (ENSMUSG00000025781.14, intron 3 of 8) 9489 ENSMUSG00000077733.1 ENSMUSG00000077733 ENSMUST00000104545 Gm23608 snoRNA Interval_93954 chr2 79922602 79922797 + 0 NA intron (ENSMUSG00000059173.19, intron 3 of 3) protein_coding-intron (ENSMUSG00000059173.19, intron 3 of 15) 136108 ENSMUSG00000034683.12 ENSMUSG00000034683 ENSMUST00000144432 Ppp1r1c protein_coding Interval_93808 chr2 77094578 77095585 + 0 NA intron (ENSMUSG00000044033.16, intron 6 of 23) protein_coding-intron (ENSMUSG00000044033.16, intron 6 of 11) -20729 ENSMUSG00000105724.1 ENSMUSG00000105724 ENSMUST00000200081 Gm44360 miRNA Interval_29300 chr11 82772103 82772284 + 0 NA Intergenic Intergenic 7848 ENSMUSG00000046010.7 ENSMUSG00000046010 ENSMUST00000056677 Zfp830 protein_coding Interval_57742 chr15 17937948 17938539 + 0 NA Intergenic Intergenic 2665 ENSMUSG00000088133.1 ENSMUSG00000088133 ENSMUST00000157508 Gm22895 misc_RNA Interval_16980 chr10 70268778 70269479 + 0 NA intron (ENSMUSG00000037762.6, intron 1 of 3) protein_coding-intron (ENSMUSG00000037762.6, intron 3 of 5) 2149 ENSMUSG00000037762.6 ENSMUSG00000037762 ENSMUST00000155933 Slc16a9 protein_coding Interval_49118 chr13 108190240 108192170 + 0 NA intron (ENSMUSG00000021694.18, intron 11 of 11) protein_coding-intron (ENSMUSG00000021694.18, intron 11 of 11) -23205 ENSMUSG00000021696.9 ENSMUSG00000021696 ENSMUST00000225550 Elovl7 protein_coding Interval_14081 chr10 26679283 26679669 + 0 NA Intergenic Intergenic -4864 ENSMUSG00000098179.1 ENSMUSG00000098179 ENSMUST00000183230 Gm8709 processed_pseudogene Interval_9119 chr1 153746365 153747079 + 0 NA intron (ENSMUSG00000099568.1, intron 1 of 1) antisense-intron (ENSMUSG00000099568.1, intron 1 of 1) 2602 ENSMUSG00000099568.1 ENSMUSG00000099568 ENSMUST00000191474 Gm28513 antisense Interval_34492 chr12 4604964 4605174 + 0 NA intron (ENSMUSG00000111971.1, intron 1 of 1) protein_coding-intron (ENSMUSG00000020640.10, intron 1 of 38) -12040 ENSMUSG00000118449.1 ENSMUSG00000118449 ENSMUST00000170816 AC241534.1 bidirectional_promoter_lncRNA Interval_75198 chr17 64600175 64602412 + 0 NA exon (ENSMUSG00000024085.13, exon 1 of 22) protein_coding-exon (ENSMUSG00000024085.13, exon 1 of 22) -45633 ENSMUSG00000073377.9 ENSMUSG00000073377 ENSMUST00000168379 AU016765 lincRNA Interval_121824 chr5 8527199 8527413 + 0 NA intron (ENSMUSG00000040570.14, intron 7 of 10) protein_coding-intron (ENSMUSG00000040570.14, intron 7 of 9) -12454 ENSMUSG00000105740.1 ENSMUSG00000105740 ENSMUST00000200378 Gm42685 TEC Interval_18417 chr10 85644857 85646031 + 0 NA exon (ENSMUSG00000020042.15, exon 1 of 5) protein_coding-exon (ENSMUSG00000020042.15, exon 1 of 5) 241 ENSMUSG00000020042.15 ENSMUSG00000020042 ENSMUST00000145433 Btbd11 protein_coding Interval_123625 chr5 33922200 33923673 + 0 NA intron (ENSMUSG00000029111.7, intron 1 of 2) protein_coding-intron (ENSMUSG00000029111.7, intron 1 of 10) 13314 ENSMUSG00000029111.7 ENSMUSG00000029111 ENSMUST00000132942 Nelfa protein_coding Interval_55811 chr14 100408889 100409118 + 0 NA Intergenic Intergenic -9480 ENSMUSG00000094585.1 ENSMUSG00000094585 ENSMUST00000104165 Gm26367 snoRNA Interval_33284 chr11 115703314 115703655 + 0 NA intron (ENSMUSG00000059923.13, intron 1 of 5) protein_coding-intron (ENSMUSG00000059923.13, intron 1 of 5) -3556 ENSMUSG00000059923.13 ENSMUSG00000059923 ENSMUST00000135065 Grb2 protein_coding Interval_127118 chr5 100397015 100397413 + 0 NA intron (ENSMUSG00000035325.16, intron 7 of 25) protein_coding-intron (ENSMUSG00000035325.16, intron 7 of 27) -4601 ENSMUSG00000035325.16 ENSMUSG00000035325 ENSMUST00000182144 Sec31a protein_coding Interval_42813 chr13 19961792 19963700 + 0 NA Intergenic Intergenic 33058 ENSMUSG00000050243.6 ENSMUSG00000050243 ENSMUST00000091762 Gm5446 processed_pseudogene Interval_69124 chr16 90802155 90802772 + 0 NA intron (ENSMUSG00000039929.14, intron 4 of 14) protein_coding-intron (ENSMUSG00000039929.14, intron 4 of 38) 7929 ENSMUSG00000039929.14 ENSMUSG00000039929 ENSMUST00000128989 Urb1 protein_coding Interval_34035 chr11 120135106 120135556 + 0 NA intron (ENSMUSG00000061306.16, intron 6 of 16) protein_coding-intron (ENSMUSG00000061306.16, intron 6 of 15) -15231 ENSMUSG00000085636.1 ENSMUSG00000085636 ENSMUST00000140273 Gm11769 processed_transcript Interval_107818 chr3 115758356 115759587 + 0 NA Intergenic Intergenic 43821 ENSMUSG00000052769.7 ENSMUSG00000052769 ENSMUST00000064809 Gm9889 lincRNA Interval_64179 chr16 8871130 8872634 + 0 NA Intergenic Intergenic 1289 ENSMUSG00000087982.1 ENSMUSG00000087982 ENSMUST00000157357 Gm22224 rRNA Interval_86033 chr19 35157668 35157987 + 0 NA Intergenic Intergenic 28299 ENSMUSG00000117973.1 ENSMUSG00000117973 ENSMUST00000238087 Gm50140 lincRNA Interval_137480 chr6 72694115 72695161 + 0 NA intron (ENSMUSG00000055799.13, intron 2 of 5) protein_coding-intron (ENSMUSG00000055799.13, intron 3 of 11) -4576 ENSMUSG00000079524.2 ENSMUSG00000079524 ENSMUST00000114051 Gm15402 antisense Interval_136104 chr6 50986437 50986742 + 0 NA Intergenic Intergenic 19321 ENSMUSG00000108153.1 ENSMUSG00000108153 ENSMUST00000203677 Gm44402 processed_pseudogene Interval_172878 chrX 52737856 52738345 + 0 NA Intergenic Intergenic 3667 ENSMUSG00000070106.1 ENSMUSG00000070106 ENSMUST00000093598 Mir363 miRNA Interval_159468 chr8 94904827 94905204 + 0 NA intron (ENSMUSG00000063605.5, intron 8 of 8) protein_coding-intron (ENSMUSG00000063605.5, intron 8 of 8) 12506 ENSMUSG00000063605.5 ENSMUSG00000063605 ENSMUST00000162020 Ccdc102a protein_coding Interval_62073 chr15 86221974 86222210 + 0 NA intron (ENSMUSG00000051864.10, intron 1 of 12) protein_coding-intron (ENSMUSG00000051864.10, intron 1 of 12) -9435 ENSMUSG00000088071.1 ENSMUSG00000088071 ENSMUST00000157446 Gm22818 snRNA Interval_157278 chr8 68924235 68924975 + 0 NA Intergenic Intergenic -25716 ENSMUSG00000110449.1 ENSMUSG00000110449 ENSMUST00000212089 Gm45780 processed_pseudogene Interval_24406 chr11 33038952 33040567 + 0 NA promoter-TSS (ENSMUSG00000081076.3) processed_pseudogene-promoter-TSS (ENSMUSG00000081076.3) -56 ENSMUSG00000081076.3 ENSMUSG00000081076 ENSMUST00000121691 Rpsa-ps4 processed_pseudogene Interval_20911 chr10 121946994 121947517 + 0 NA intron (ENSMUSG00000020121.15, intron 1 of 3) protein_coding-intron (ENSMUSG00000020121.15, intron 1 of 21) 100060 ENSMUSG00000020121.15 ENSMUSG00000020121 ENSMUST00000162710 Srgap1 protein_coding Interval_99891 chr2 165649186 165649440 + 0 NA intron (ENSMUSG00000017897.18, intron 1 of 15) protein_coding-intron (ENSMUSG00000017897.18, intron 1 of 15) -6005 ENSMUSG00000017897.18 ENSMUSG00000017897 ENSMUST00000128280 Eya2 protein_coding Interval_6384 chr1 106712481 106712766 + 0 NA exon (ENSMUSG00000057329.7, exon 1 of 2) protein_coding-exon (ENSMUSG00000057329.7, exon 1 of 2) 556 ENSMUSG00000057329.7 ENSMUSG00000057329 ENSMUST00000189999 Bcl2 protein_coding Interval_99957 chr2 166105758 166106456 + 0 NA intron (ENSMUSG00000006800.14, intron 4 of 21) protein_coding-intron (ENSMUSG00000006800.14, intron 3 of 20) 49556 ENSMUSG00000006800.14 ENSMUSG00000006800 ENSMUST00000133395 Sulf2 protein_coding Interval_164245 chr9 34203920 34205310 + 0 NA Intergenic Intergenic 4387 ENSMUSG00000098909.1 ENSMUSG00000098909 ENSMUST00000183960 Gm27161 processed_pseudogene Interval_24180 chr11 31017130 31017989 + 0 NA intron (ENSMUSG00000020305.13, intron 2 of 9) protein_coding-intron (ENSMUSG00000020305.13, intron 2 of 9) -13661 ENSMUSG00000082213.1 ENSMUSG00000082213 ENSMUST00000118251 Gm12102 processed_pseudogene Interval_63176 chr15 99574104 99574334 + 0 NA Intergenic Intergenic -4836 ENSMUSG00000023013.5 ENSMUSG00000023013 ENSMUST00000023752 Aqp2 protein_coding Interval_2845 chr1 46342169 46343879 + 0 NA intron (ENSMUSG00000041144.12, intron 59 of 64) protein_coding-intron (ENSMUSG00000041144.12, intron 60 of 65) -31173 ENSMUSG00000096047.1 ENSMUSG00000096047 ENSMUST00000093689 n-R5s211 rRNA Interval_88147 chr19 59743034 59743232 + 0 NA Intergenic Intergenic 52399 ENSMUSG00000118190.1 ENSMUSG00000118190 ENSMUST00000235911 Gm50411 lincRNA Interval_63326 chr15 100324077 100325538 + 0 NA intron (ENSMUSG00000054619.7, intron 1 of 1) protein_coding-intron (ENSMUSG00000054619.7, intron 1 of 1) -10122 ENSMUSG00000058057.5 ENSMUSG00000058057 ENSMUST00000075420 Mettl7a3 protein_coding Interval_35769 chr12 29141868 29142336 + 0 NA intron (ENSMUSG00000113986.1, intron 1 of 3) lincRNA-intron (ENSMUSG00000113986.1, intron 2 of 7) 173 ENSMUSG00000113986.1 ENSMUSG00000113986 ENSMUST00000222225 Gm31333 lincRNA Interval_117545 chr4 124602388 124602585 + 0 NA intron (ENSMUSG00000098760.1, intron 1 of 1) antisense-intron (ENSMUSG00000098760.1, intron 1 of 1) 33296 ENSMUSG00000073759.6 ENSMUSG00000073759 ENSMUST00000133499 4933407E24Rik lincRNA Interval_135696 chr6 43579040 43579800 + 0 NA intron (ENSMUSG00000029735.17, intron 1 of 6) protein_coding-intron (ENSMUSG00000029735.17, intron 3 of 8) 46546 ENSMUSG00000029735.17 ENSMUSG00000029735 ENSMUST00000114643 Tpk1 protein_coding Interval_99385 chr2 160496157 160496625 + 0 NA Intergenic Intergenic -86966 ENSMUSG00000078955.3 ENSMUSG00000078955 ENSMUST00000128681 Gm14222 sense_intronic Interval_117155 chr4 120110387 120110806 + 0 NA intron (ENSMUSG00000028634.17, intron 2 of 5) protein_coding-intron (ENSMUSG00000028634.17, intron 5 of 8) 45600 ENSMUSG00000115115.1 ENSMUSG00000115115 ENSMUST00000226560 AL607142.1 protein_coding Interval_86334 chr19 38826447 38827360 + 0 NA Intergenic Intergenic -7666 ENSMUSG00000024999.7 ENSMUSG00000024999 ENSMUST00000025963 Noc3l protein_coding Interval_40824 chr12 108675838 108676341 + 0 NA promoter-TSS (ENSMUSG00000021262.15) protein_coding-promoter-TSS (ENSMUSG00000021262.15) -10008 ENSMUSG00000021262.15 ENSMUSG00000021262 ENSMUST00000223548 Evl protein_coding Interval_111082 chr4 11734304 11734858 + 0 NA Intergenic Intergenic -23612 ENSMUSG00000028217.11 ENSMUSG00000028217 ENSMUST00000108303 Cdh17 protein_coding Interval_38737 chr12 81731868 81732449 + 0 NA exon (ENSMUSG00000042724.8, exon 6 of 11) protein_coding-exon (ENSMUSG00000042724.8, exon 6 of 11) -12106 ENSMUSG00000113184.1 ENSMUSG00000113184 ENSMUST00000221438 Gm49654 lincRNA Interval_35245 chr12 18803672 18803885 + 0 NA Intergenic Intergenic 30284 ENSMUSG00000113646.1 ENSMUSG00000113646 ENSMUST00000220463 Gm46313 unprocessed_pseudogene Interval_57260 chr15 8192314 8192875 + 0 NA intron (ENSMUSG00000039801.7, intron 15 of 52) protein_coding-intron (ENSMUSG00000039801.7, intron 15 of 52) -27410 ENSMUSG00000064566.1 ENSMUSG00000064566 ENSMUST00000082632 Gm24144 snRNA Interval_58398 chr15 34147056 34147947 + 0 NA Intergenic Intergenic -8125 ENSMUSG00000089072.1 ENSMUSG00000089072 ENSMUST00000158447 Gm24500 snoRNA Interval_56143 chr14 106963702 106964833 + 0 NA Intergenic Intergenic 198237 ENSMUSG00000077224.1 ENSMUSG00000077224 ENSMUST00000104036 Gm23437 snoRNA Interval_164196 chr9 32405034 32405767 + 0 NA Intergenic Intergenic 20191 ENSMUSG00000041248.9 ENSMUSG00000041248 ENSMUST00000172015 Kcnj1 protein_coding Interval_120383 chr4 148229609 148230412 + 0 NA Intergenic Intergenic 30741 ENSMUSG00000041544.11 ENSMUSG00000041544 ENSMUST00000129734 Disp3 protein_coding Interval_168029 chr9 75477649 75477896 + 0 NA intron (ENSMUSG00000109032.1, intron 4 of 8) transcribed_unprocessed_pseudogene-intron (ENSMUSG00000109032.1, intron 4 of 8) -5079 ENSMUSG00000109032.1 ENSMUSG00000109032 ENSMUST00000209180 Gm7972 transcribed_unprocessed_pseudogene Interval_96143 chr2 120011314 120012006 + 0 NA promoter-TSS (ENSMUSG00000033902.12) protein_coding-promoter-TSS (ENSMUSG00000033902.12) -5857 ENSMUSG00000098632.1 ENSMUSG00000098632 ENSMUST00000184907 Mir7665 miRNA Interval_28594 chr11 77030664 77031720 + 0 NA intron (ENSMUSG00000020838.12, intron 14 of 14) protein_coding-intron (ENSMUSG00000020838.12, intron 13 of 13) 13015 ENSMUSG00000020838.12 ENSMUSG00000020838 ENSMUST00000137819 Slc6a4 protein_coding Interval_39530 chr12 89395010 89395740 + 0 NA intron (ENSMUSG00000066392.12, intron 7 of 18) protein_coding-intron (ENSMUSG00000066392.12, intron 8 of 19) -35961 ENSMUSG00000080680.1 ENSMUSG00000080680 ENSMUST00000117030 Gm23989 miRNA Interval_71017 chr17 17214622 17215355 + 0 NA Intergenic Intergenic -47362 ENSMUSG00000116802.1 ENSMUSG00000116802 ENSMUST00000231376 Gm5165 lincRNA Interval_51220 chr14 25197178 25197453 + 0 NA Intergenic Intergenic -54074 ENSMUSG00000114916.1 ENSMUSG00000114916 ENSMUST00000225429 4930572O13Rik lincRNA Interval_25314 chr11 46258000 46258924 + 0 NA intron (ENSMUSG00000020340.16, intron 15 of 30) protein_coding-intron (ENSMUSG00000020340.16, intron 15 of 30) -14268 ENSMUSG00000081078.1 ENSMUSG00000081078 ENSMUST00000117362 Gm12568 processed_pseudogene Interval_48310 chr13 98008543 98010330 + 0 NA intron (ENSMUSG00000021662.11, intron 9 of 34) protein_coding-intron (ENSMUSG00000021662.11, intron 9 of 35) 6981 ENSMUSG00000021662.11 ENSMUSG00000021662 ENSMUST00000224866 Arhgef28 protein_coding Interval_95784 chr2 116216064 116216682 + 0 NA Intergenic Intergenic -140277 ENSMUSG00000103562.1 ENSMUSG00000103562 ENSMUST00000195368 2810405F15Rik TEC Interval_77864 chr18 4803273 4804361 + 0 NA Intergenic Intergenic -8669 ENSMUSG00000097043.1 ENSMUSG00000097043 ENSMUST00000180904 Gm10556 lincRNA Interval_49430 chr13 111935968 111937036 + 0 NA Intergenic Intergenic -52325 ENSMUSG00000082433.2 ENSMUSG00000082433 ENSMUST00000122415 Gm9025 processed_pseudogene Interval_121813 chr5 8438948 8439451 + 0 NA intron (ENSMUSG00000054099.11, intron 4 of 5) protein_coding-intron (ENSMUSG00000054099.11, intron 5 of 11) 16341 ENSMUSG00000054099.11 ENSMUSG00000054099 ENSMUST00000198119 Slc25a40 protein_coding Interval_85115 chr19 22986513 22986801 + 0 NA intron (ENSMUSG00000052387.16, intron 24 of 24) protein_coding-intron (ENSMUSG00000052387.16, intron 25 of 26) -74797 ENSMUSG00000118155.1 ENSMUSG00000118155 ENSMUST00000235686 Gm50136 lincRNA Interval_95913 chr2 118343921 118344724 + 0 NA intron (ENSMUSG00000040133.2, intron 1 of 2) protein_coding-intron (ENSMUSG00000040133.2, intron 1 of 2) -6916 ENSMUSG00000088497.1 ENSMUSG00000088497 ENSMUST00000157872 Gm22651 rRNA Interval_55750 chr14 99576846 99577229 + 0 NA TTS (ENSMUSG00000115580.1) lincRNA-TTS (ENSMUSG00000115580.1) 42979 ENSMUSG00000115550.1 ENSMUSG00000115550 ENSMUST00000226602 Gm49225 lincRNA Interval_137794 chr6 82575664 82575923 + 0 NA Intergenic Intergenic -104339 ENSMUSG00000107453.1 ENSMUSG00000107453 ENSMUST00000203711 Gm44145 antisense Interval_34484 chr12 4556486 4557722 + 0 NA intron (ENSMUSG00000112819.1, intron 1 of 3) lincRNA-intron (ENSMUSG00000112819.1, intron 1 of 3) 12434 ENSMUSG00000112819.1 ENSMUSG00000112819 ENSMUST00000220320 Gm46332 lincRNA Interval_23843 chr11 27056983 27057186 + 0 NA Intergenic Intergenic 5387 ENSMUSG00000083895.1 ENSMUSG00000083895 ENSMUST00000120189 Gm12074 processed_pseudogene Interval_160919 chr8 115043464 115043788 + 0 NA intron (ENSMUSG00000004637.15, intron 8 of 8) protein_coding-intron (ENSMUSG00000004637.15, intron 8 of 8) 9287 ENSMUSG00000088428.1 ENSMUSG00000088428 ENSMUST00000157803 Gm22556 rRNA Interval_14870 chr10 40652624 40653340 + 0 NA intron (ENSMUSG00000063428.8, intron 4 of 4) protein_coding-intron (ENSMUSG00000063428.8, intron 4 of 4) 22905 ENSMUSG00000063428.8 ENSMUSG00000063428 ENSMUST00000214618 Ddo protein_coding Interval_45250 chr13 53510615 53510939 + 0 NA intron (ENSMUSG00000113834.1, intron 2 of 6) lincRNA-intron (ENSMUSG00000113834.1, intron 2 of 6) -14926 ENSMUSG00000063166.4 ENSMUSG00000063166 ENSMUST00000081132 Gm5449 processed_pseudogene Interval_29494 chr11 84429496 84429888 + 0 NA intron (ENSMUSG00000018697.14, intron 8 of 8) protein_coding-intron (ENSMUSG00000018697.14, intron 12 of 12) 83830 ENSMUSG00000018697.14 ENSMUSG00000018697 ENSMUST00000148434 Aatf protein_coding Interval_116298 chr4 109437661 109438500 + 0 NA intron (ENSMUSG00000028555.15, intron 12 of 17) protein_coding-intron (ENSMUSG00000028555.15, intron 12 of 17) 23304 ENSMUSG00000028555.15 ENSMUSG00000028555 ENSMUST00000139237 Ttc39a protein_coding Interval_88552 chr2 6065189 6065702 + 0 NA Intergenic Intergenic 15018 ENSMUSG00000043241.14 ENSMUSG00000043241 ENSMUST00000144901 Upf2 protein_coding Interval_134350 chr6 26047244 26047545 + 0 NA Intergenic Intergenic -70313 ENSMUSG00000107127.1 ENSMUSG00000107127 ENSMUST00000202067 Gm6719 processed_pseudogene Interval_76877 chr17 84691757 84692981 + 0 NA intron (ENSMUSG00000024254.15, intron 4 of 12) protein_coding-intron (ENSMUSG00000024254.15, intron 4 of 12) 9238 ENSMUSG00000024254.15 ENSMUSG00000024254 ENSMUST00000171915 Abcg8 protein_coding Interval_82786 chr18 77075692 77076266 + 0 NA intron (ENSMUSG00000025423.16, intron 1 of 13) protein_coding-intron (ENSMUSG00000025423.16, intron 1 of 12) 10734 ENSMUSG00000025423.16 ENSMUSG00000025423 ENSMUST00000168882 Pias2 protein_coding Interval_135175 chr6 37222104 37222445 + 0 NA intron (ENSMUSG00000038665.15, intron 1 of 32) protein_coding-intron (ENSMUSG00000038665.15, intron 2 of 32) 77910 ENSMUSG00000038665.15 ENSMUSG00000038665 ENSMUST00000136457 Dgki protein_coding Interval_48989 chr13 106773747 106774025 + 0 NA Intergenic Intergenic 6334 ENSMUSG00000064854.1 ENSMUSG00000064854 ENSMUST00000082920 Gm24527 snRNA Interval_110250 chr3 154834452 154834716 + 0 NA intron (ENSMUSG00000040086.13, intron 20 of 22) protein_coding-intron (ENSMUSG00000040086.13, intron 21 of 24) -5023 ENSMUSG00000118443.1 ENSMUSG00000118443 ENSMUST00000238360 Gm18589 unitary_pseudogene Interval_43415 chr13 30441197 30441733 + 0 NA Intergenic Intergenic -41531 ENSMUSG00000083882.1 ENSMUSG00000083882 ENSMUST00000120812 Gm11369 processed_pseudogene Interval_161199 chr8 118508469 118509842 + 0 NA intron (ENSMUSG00000031841.19, intron 2 of 7) protein_coding-intron (ENSMUSG00000031841.19, intron 2 of 13) -82556 ENSMUSG00000064801.1 ENSMUSG00000064801 ENSMUST00000082867 Gm24035 snRNA Interval_5717 chr1 91186689 91187089 + 0 NA intron (ENSMUSG00000034353.14, intron 1 of 3) protein_coding-intron (ENSMUSG00000034353.14, intron 1 of 2) 6847 ENSMUSG00000034353.14 ENSMUSG00000034353 ENSMUST00000097648 Ramp1 protein_coding Interval_115566 chr4 100842184 100843335 + 0 NA intron (ENSMUSG00000028532.14, intron 1 of 26) protein_coding-intron (ENSMUSG00000028532.14, intron 1 of 26) -151951 ENSMUSG00000028532.14 ENSMUSG00000028532 ENSMUST00000136430 Cachd1 protein_coding Interval_155001 chr8 25596948 25597936 + 0 NA promoter-TSS (ENSMUSG00000037363.9) protein_coding-promoter-TSS (ENSMUSG00000037363.9) 140 ENSMUSG00000037363.9 ENSMUSG00000037363 ENSMUST00000209734 Letm2 protein_coding Interval_167698 chr9 72110701 72112464 + 0 NA promoter-TSS (ENSMUSG00000032228.16) protein_coding-promoter-TSS (ENSMUSG00000032228.16) 69 ENSMUSG00000032228.16 ENSMUSG00000032228 ENSMUST00000184806 Tcf12 protein_coding Interval_6788 chr1 119482949 119483140 + 0 NA exon (ENSMUSG00000004451.14, exon 2 of 2) protein_coding-exon (ENSMUSG00000004451.14, exon 2 of 2) -16433 ENSMUSG00000101437.1 ENSMUSG00000101437 ENSMUST00000190805 Gm29454 processed_pseudogene Interval_80084 chr18 37421368 37423862 + 0 NA exon (ENSMUSG00000051486.5, exon 1 of 1) protein_coding-exon (ENSMUSG00000051486.5, exon 1 of 1) 1197 ENSMUSG00000051486.5 ENSMUSG00000051486 ENSMUST00000053073 Pcdhb11 protein_coding Interval_15177 chr10 43126337 43126963 + 0 NA intron (ENSMUSG00000038248.8, intron 4 of 6) protein_coding-intron (ENSMUSG00000038248.8, intron 4 of 6) -27566 ENSMUSG00000099893.1 ENSMUSG00000099893 ENSMUST00000187332 Gm29245 TEC Interval_108253 chr3 123038760 123039476 + 0 NA Intergenic Intergenic -4155 ENSMUSG00000028116.13 ENSMUSG00000028116 ENSMUST00000140231 Myoz2 protein_coding Interval_119408 chr4 137511752 137512698 + 0 NA exon (ENSMUSG00000028763.18, exon 11 of 97) protein_coding-exon (ENSMUSG00000028763.18, exon 11 of 97) -10234 ENSMUSG00000028763.18 ENSMUSG00000028763 ENSMUST00000155648 Hspg2 protein_coding Interval_123331 chr5 31503993 31504187 + 0 NA TTS (ENSMUSG00000064037.13) protein_coding-TTS (ENSMUSG00000064037.13) -2971 ENSMUSG00000064037.13 ENSMUSG00000064037 ENSMUST00000202515 Gpn1 protein_coding Interval_17976 chr10 81200004 81200240 + 0 NA intron (ENSMUSG00000004939.7, intron 4 of 6) protein_coding-intron (ENSMUSG00000004939.7, intron 4 of 6) 1929 ENSMUSG00000004939.7 ENSMUSG00000004939 ENSMUST00000005069 Nmrk2 protein_coding Interval_135211 chr6 37574347 37576633 + 0 NA Intergenic Intergenic 34076 ENSMUSG00000106889.1 ENSMUSG00000106889 ENSMUST00000201541 Gm7463 processed_pseudogene Interval_149487 chr7 99043063 99043398 + 0 NA intron (ENSMUSG00000035354.9, intron 7 of 11) protein_coding-intron (ENSMUSG00000035354.9, intron 6 of 14) -26586 ENSMUSG00000035354.9 ENSMUSG00000035354 ENSMUST00000208502 Uvrag protein_coding Interval_140967 chr6 123279855 123280139 + 0 NA Intergenic Intergenic 9873 ENSMUSG00000030142.10 ENSMUSG00000030142 ENSMUST00000175954 Clec4e protein_coding Interval_105247 chr3 84189407 84191975 + 0 NA promoter-TSS (ENSMUSG00000027993.16) protein_coding-promoter-TSS (ENSMUSG00000027993.16) 16587 ENSMUSG00000104043.1 ENSMUSG00000104043 ENSMUST00000193882 Gm6525 protein_coding Interval_157982 chr8 77536847 77537154 + 0 NA Intergenic Intergenic -12454 ENSMUSG00000037134.17 ENSMUSG00000037134 ENSMUST00000156753 Prmt9 protein_coding Interval_106559 chr3 97207985 97209157 + 0 NA exon (ENSMUSG00000038256.15, exon 8 of 10) protein_coding-exon (ENSMUSG00000038256.15, exon 8 of 10) 49475 ENSMUSG00000028093.15 ENSMUSG00000028093 ENSMUST00000198329 Acp6 protein_coding Interval_118248 chr4 129803472 129804768 + 0 NA Intergenic Intergenic -16588 ENSMUSG00000028788.14 ENSMUSG00000028788 ENSMUST00000141754 Ptp4a2 protein_coding Interval_27563 chr11 68742273 68743545 + 0 NA intron (ENSMUSG00000020900.15, intron 4 of 12) protein_coding-intron (ENSMUSG00000020900.15, intron 4 of 42) 50755 ENSMUSG00000020900.15 ENSMUSG00000020900 ENSMUST00000139059 Myh10 protein_coding Interval_53014 chr14 53487838 53488510 + 0 NA intron (ENSMUSG00000096900.3, intron 1 of 1) TR_V_gene-intron (ENSMUSG00000096900.3, intron 1 of 1) 129 ENSMUSG00000096900.3 ENSMUSG00000096900 ENSMUST00000103581 Trav9-1 TR_V_gene Interval_44114 chr13 40969778 40970673 + 0 NA intron (ENSMUSG00000086693.1, intron 1 of 4) antisense-intron (ENSMUSG00000086693.1, intron 1 of 4) 16810 ENSMUSG00000021360.16 ENSMUSG00000021360 ENSMUST00000225996 Gcnt2 protein_coding Interval_72566 chr17 30696357 30696659 + 0 NA intron (ENSMUSG00000033826.10, intron 22 of 90) protein_coding-intron (ENSMUSG00000033826.10, intron 24 of 92) 25868 ENSMUSG00000033826.10 ENSMUSG00000033826 ENSMUST00000235567 Dnah8 protein_coding Interval_58030 chr15 26802453 26802677 + 0 NA intron (ENSMUSG00000043556.10, intron 1 of 1) protein_coding-intron (ENSMUSG00000043556.10, intron 1 of 3) -56428 ENSMUSG00000115381.1 ENSMUSG00000115381 ENSMUST00000227799 Gm49266 TEC Interval_147471 chr7 67562339 67562902 + 0 NA intron (ENSMUSG00000030556.13, intron 5 of 9) protein_coding-intron (ENSMUSG00000030556.13, intron 5 of 9) 8083 ENSMUSG00000087926.1 ENSMUSG00000087926 ENSMUST00000157301 Gm23233 snoRNA Interval_59884 chr15 60759787 60760407 + 0 NA promoter-TSS (ENSMUSG00000114984.1) processed_pseudogene-promoter-TSS (ENSMUSG00000114984.1) -134 ENSMUSG00000114984.1 ENSMUSG00000114984 ENSMUST00000226538 Gm48947 processed_pseudogene Interval_5725 chr1 91249664 91250866 + 0 NA promoter-TSS (ENSMUSG00000034343.14) protein_coding-promoter-TSS (ENSMUSG00000034343.14) -391 ENSMUSG00000034343.14 ENSMUSG00000034343 ENSMUST00000185697 Ube2f protein_coding Interval_112501 chr4 41639785 41640662 + 0 NA exon (ENSMUSG00000028445.7, exon 1 of 2) protein_coding-exon (ENSMUSG00000028445.7, exon 1 of 2) 101 ENSMUSG00000028445.7 ENSMUSG00000028445 ENSMUST00000127306 Enho protein_coding Interval_21179 chr10 127069456 127070812 + 0 NA promoter-TSS (ENSMUSG00000112639.1) lincRNA-promoter-TSS (ENSMUSG00000112639.1) 127 ENSMUSG00000006736.9 ENSMUSG00000006736 ENSMUST00000217875 Tspan31 protein_coding Interval_89845 chr2 25938621 25938884 + 0 NA exon (ENSMUSG00000026933.17, exon 11 of 17) protein_coding-exon (ENSMUSG00000026933.17, exon 11 of 17) 44530 ENSMUSG00000026933.17 ENSMUSG00000026933 ENSMUST00000127823 Camsap1 protein_coding Interval_105888 chr3 89927506 89928184 + 0 NA Intergenic Intergenic -14649 ENSMUSG00000027947.11 ENSMUSG00000027947 ENSMUST00000029559 Il6ra protein_coding Interval_145530 chr7 35396258 35397325 + 0 NA promoter-TSS (ENSMUSG00000030493.13) protein_coding-promoter-TSS (ENSMUSG00000030493.13) -83 ENSMUSG00000030493.13 ENSMUSG00000030493 ENSMUST00000154597 Faap24 protein_coding Interval_78800 chr18 20701834 20702532 + 0 NA intron (ENSMUSG00000056124.5, intron 4 of 8) protein_coding-intron (ENSMUSG00000056124.5, intron 4 of 8) -19220 ENSMUSG00000091449.3 ENSMUSG00000091449 ENSMUST00000165229 Gm10269 processed_pseudogene Interval_56628 chr14 120943889 120944146 + 0 NA intron (ENSMUSG00000030662.10, intron 23 of 25) protein_coding-intron (ENSMUSG00000030662.10, intron 23 of 25) 28170 ENSMUSG00000030662.10 ENSMUSG00000030662 ENSMUST00000228277 Ipo5 protein_coding Interval_156041 chr8 43148330 43150688 + 0 NA Intergenic Intergenic -9245 ENSMUSG00000109991.1 ENSMUSG00000109991 ENSMUST00000209609 Gm6284 processed_pseudogene Interval_172800 chrX 49660840 49661343 + 0 NA exon (ENSMUSG00000082192.2, exon 1 of 1) processed_pseudogene-exon (ENSMUSG00000082192.2, exon 1 of 1) 131 ENSMUSG00000082192.2 ENSMUSG00000082192 ENSMUST00000121891 Gm14719 processed_pseudogene Interval_122626 chr5 24324921 24325922 + 0 NA TTS (ENSMUSG00000038319.14) protein_coding-TTS (ENSMUSG00000038319.14) 1098 ENSMUSG00000038319.14 ENSMUSG00000038319 ENSMUST00000142197 Kcnh2 protein_coding Interval_116395 chr4 111433761 111434384 + 0 NA TTS (ENSMUSG00000028545.13) protein_coding-TTS (ENSMUSG00000028545.13) 875 ENSMUSG00000028545.13 ENSMUSG00000028545 ENSMUST00000123667 Bend5 protein_coding Interval_148581 chr7 82811549 82813255 + 0 NA Intergenic Intergenic -39197 ENSMUSG00000030636.15 ENSMUSG00000030636 ENSMUST00000032872 1700010L04Rik lincRNA Interval_29954 chr11 88348289 88349156 + 0 NA intron (ENSMUSG00000069769.13, intron 12 of 13) protein_coding-intron (ENSMUSG00000069769.13, intron 12 of 13) -4051 ENSMUSG00000092985.1 ENSMUSG00000092985 ENSMUST00000175244 Mir378b miRNA Interval_118390 chr4 131064610 131065370 + 0 NA Intergenic Intergenic -54516 ENSMUSG00000086262.7 ENSMUSG00000086262 ENSMUST00000153810 A930031H19Rik lincRNA Interval_63709 chr15 102972351 102973197 + 0 NA promoter-TSS (ENSMUSG00000065488.2) miRNA-promoter-TSS (ENSMUSG00000065488.2) -576 ENSMUSG00000065488.2 ENSMUSG00000065488 ENSMUST00000083554 Mir196a-2 miRNA Interval_69218 chr16 91427996 91428703 + 0 NA Intergenic Intergenic 22185 ENSMUSG00000022969.13 ENSMUSG00000022969 ENSMUST00000137612 Il10rb protein_coding Interval_127868 chr5 108409882 108410143 + 0 NA intron (ENSMUSG00000029491.7, intron 3 of 17) protein_coding-intron (ENSMUSG00000029491.7, intron 3 of 21) 21586 ENSMUSG00000029491.7 ENSMUSG00000029491 ENSMUST00000130448 Pde6b protein_coding Interval_90182 chr2 28797773 28797963 + 0 NA intron (ENSMUSG00000026807.8, intron 11 of 12) protein_coding-intron (ENSMUSG00000026807.8, intron 11 of 12) -4299 ENSMUSG00000082796.1 ENSMUSG00000082796 ENSMUST00000121089 Gm13385 processed_pseudogene Interval_42894 chr13 21193321 21194268 + 0 NA TTS (ENSMUSG00000021326.13) protein_coding-TTS (ENSMUSG00000021326.13) -6238 ENSMUSG00000113104.1 ENSMUSG00000113104 ENSMUST00000220690 Gm47806 antisense Interval_20141 chr10 115226679 115228158 + 0 NA intron (ENSMUSG00000020130.9, intron 5 of 16) protein_coding-intron (ENSMUSG00000020130.9, intron 5 of 16) 23835 ENSMUSG00000020130.9 ENSMUSG00000020130 ENSMUST00000219274 Tbc1d15 protein_coding Interval_36966 chr12 55737082 55737359 + 0 NA intron (ENSMUSG00000021027.17, intron 16 of 41) protein_coding-intron (ENSMUSG00000021027.17, intron 16 of 40) 79307 ENSMUSG00000112393.1 ENSMUSG00000112393 ENSMUST00000217762 Gm48655 TEC Interval_134927 chr6 33769150 33770484 + 0 NA intron (ENSMUSG00000029763.17, intron 2 of 4) protein_coding-intron (ENSMUSG00000029763.17, intron 11 of 17) -77663 ENSMUSG00000107103.1 ENSMUSG00000107103 ENSMUST00000202529 Gm43164 TEC Interval_135502 chr6 39703289 39704929 + 0 NA intron (ENSMUSG00000002413.15, intron 1 of 17) protein_coding-intron (ENSMUSG00000002413.15, intron 1 of 21) -39030 ENSMUSG00000002413.15 ENSMUSG00000002413 ENSMUST00000169647 Braf protein_coding Interval_36990 chr12 56009826 56010461 + 0 NA Intergenic Intergenic -40390 ENSMUSG00000112315.1 ENSMUSG00000112315 ENSMUST00000219409 Gm5183 processed_pseudogene Interval_94600 chr2 92544100 92544973 + 0 NA Intergenic Intergenic -3556 ENSMUSG00000085293.2 ENSMUSG00000085293 ENSMUST00000142249 Gm13817 lincRNA Interval_72891 chr17 32985833 32986602 + 0 NA Intergenic Intergenic -6984 ENSMUSG00000053390.16 ENSMUSG00000053390 ENSMUST00000157017 Zfp952 protein_coding Interval_82004 chr18 67083871 67084663 + 0 NA exon (ENSMUSG00000117815.1, exon 1 of 1) lincRNA-exon (ENSMUSG00000117815.1, exon 1 of 1) -4031 ENSMUSG00000024524.17 ENSMUSG00000024524 ENSMUST00000236918 Gnal protein_coding Interval_69064 chr16 90392259 90392583 + 0 NA intron (ENSMUSG00000053414.8, intron 1 of 10) protein_coding-intron (ENSMUSG00000053414.8, intron 1 of 10) -8123 ENSMUSG00000053414.8 ENSMUSG00000053414 ENSMUST00000231603 Hunk protein_coding Interval_92114 chr2 53379378 53379628 + 0 NA Intergenic Intergenic 18984 ENSMUSG00000082472.1 ENSMUSG00000082472 ENSMUST00000118477 Gm13501 processed_pseudogene Interval_153463 chr7 144960044 144960564 + 0 NA Intergenic Intergenic -20379 ENSMUSG00000070348.5 ENSMUSG00000070348 ENSMUST00000135985 Ccnd1 protein_coding Interval_96292 chr2 121336554 121336781 + 0 NA promoter-TSS (ENSMUSG00000033526.16) protein_coding-promoter-TSS (ENSMUSG00000033526.16) 492 ENSMUSG00000033526.16 ENSMUSG00000033526 ENSMUST00000134796 Ppip5k1 protein_coding Interval_26086 chr11 54062984 54063418 + 0 NA TTS (ENSMUSG00000020388.12) protein_coding-TTS (ENSMUSG00000020388.12) 1367 ENSMUSG00000020388.12 ENSMUSG00000020388 ENSMUST00000151948 Pdlim4 protein_coding Interval_53762 chr14 61575046 61575624 + 0 NA Intergenic Intergenic 16537 ENSMUSG00000114902.1 ENSMUSG00000114902 ENSMUST00000225750 Gm4118 processed_pseudogene Interval_101964 chr3 13613576 13613813 + 0 NA intron (ENSMUSG00000039717.16, intron 1 of 5) protein_coding-intron (ENSMUSG00000039717.16, intron 2 of 2) 56451 ENSMUSG00000104514.1 ENSMUSG00000104514 ENSMUST00000192809 Gm37164 processed_pseudogene Interval_145925 chr7 42003435 42004203 + 0 NA Intergenic Intergenic -17017 ENSMUSG00000092281.1 ENSMUSG00000092281 ENSMUST00000173370 Hmgb1-ps7 processed_pseudogene Interval_121291 chr4 154759894 154760088 + 0 NA Intergenic Intergenic -77468 ENSMUSG00000046637.3 ENSMUSG00000046637 ENSMUST00000137684 Ttc34 protein_coding Interval_100734 chr2 172215670 172217022 + 0 NA Intergenic Intergenic -32146 ENSMUSG00000038537.1 ENSMUSG00000038537 ENSMUST00000038532 Mc3r protein_coding Interval_108993 chr3 134146723 134147056 + 0 NA TTS (ENSMUSG00000106130.1) miRNA-TTS (ENSMUSG00000106130.1) 219 ENSMUSG00000106130.1 ENSMUSG00000106130 ENSMUST00000197960 Gm44361 miRNA Interval_44112 chr13 40957172 40957417 + 0 NA exon (ENSMUSG00000086693.1, exon 5 of 5) antisense-exon (ENSMUSG00000086693.1, exon 5 of 5) 3879 ENSMUSG00000021360.16 ENSMUSG00000021360 ENSMUST00000225996 Gcnt2 protein_coding Interval_34014 chr11 120028599 120030867 + 0 NA intron (ENSMUSG00000025375.15, intron 1 of 13) protein_coding-intron (ENSMUSG00000025375.15, intron 1 of 13) -14871 ENSMUSG00000065600.1 ENSMUSG00000065600 ENSMUST00000083666 Mir338 miRNA Interval_127661 chr5 106392292 106392639 + 0 NA Intergenic Intergenic 23453 ENSMUSG00000105618.1 ENSMUSG00000105618 ENSMUST00000197142 Gm42916 lincRNA Interval_64676 chr16 14103024 14103834 + 0 NA Intergenic Intergenic 25202 ENSMUSG00000098652.1 ENSMUSG00000098652 ENSMUST00000183739 Gm27671 miRNA Interval_61394 chr15 81318381 81318886 + 0 NA TTS (ENSMUSG00000022404.8) protein_coding-TTS (ENSMUSG00000022404.8) 42144 ENSMUSG00000022404.8 ENSMUSG00000022404 ENSMUST00000231078 Slc25a17 protein_coding Interval_86793 chr19 43916374 43917342 + 0 NA intron (ENSMUSG00000025195.9, intron 1 of 15) protein_coding-intron (ENSMUSG00000025195.9, intron 1 of 15) -3615 ENSMUSG00000118000.1 ENSMUSG00000118000 ENSMUST00000235838 Gm50217 lincRNA Interval_161082 chr8 117355515 117356240 + 0 NA intron (ENSMUSG00000034390.16, intron 1 of 20) protein_coding-intron (ENSMUSG00000034390.16, intron 1 of 20) -67539 ENSMUSG00000034390.16 ENSMUSG00000034390 ENSMUST00000212884 Cmip protein_coding Interval_60332 chr15 72962928 72963605 + 0 NA intron (ENSMUSG00000047921.17, intron 9 of 16) protein_coding-intron (ENSMUSG00000047921.17, intron 9 of 21) 49909 ENSMUSG00000096173.2 ENSMUSG00000096173 ENSMUST00000166418 Gm3150 processed_pseudogene Interval_68327 chr16 73233633 73233844 + 0 NA intron (ENSMUSG00000116976.1, intron 5 of 5) processed_transcript-intron (ENSMUSG00000116976.1, intron 1 of 4) 161363 ENSMUSG00000116976.1 ENSMUSG00000116976 ENSMUST00000231486 4930500H12Rik processed_transcript Interval_173468 chrX 94212216 94213680 + 0 NA promoter-TSS (ENSMUSG00000035150.15) protein_coding-promoter-TSS (ENSMUSG00000035150.15) -86 ENSMUSG00000035150.15 ENSMUSG00000035150 ENSMUST00000127963 Eif2s3x protein_coding Interval_97834 chr2 144338277 144338703 + 0 NA Intergenic Intergenic 7031 ENSMUSG00000084837.1 ENSMUSG00000084837 ENSMUST00000153051 1700108N11Rik antisense Interval_9420 chr1 156961614 156962354 + 0 NA Intergenic Intergenic 22146 ENSMUSG00000101905.1 ENSMUSG00000101905 ENSMUST00000186765 4930439D14Rik antisense Interval_67361 chr16 47981278 47981593 + 0 NA Intergenic Intergenic -91562 ENSMUSG00000067716.3 ENSMUSG00000067716 ENSMUST00000088296 Gm7275 processed_pseudogene Interval_110346 chr3 157232684 157233357 + 0 NA intron (ENSMUSG00000040037.13, intron 6 of 6) protein_coding-intron (ENSMUSG00000040037.13, intron 6 of 6) 4311 ENSMUSG00000094982.1 ENSMUSG00000094982 ENSMUST00000177876 Gm23725 snRNA Interval_152021 chr7 128318894 128319832 + 0 NA intron (ENSMUSG00000108608.1, intron 1 of 1) transcribed_processed_pseudogene-intron (ENSMUSG00000108608.1, intron 1 of 1) -10445 ENSMUSG00000108636.1 ENSMUSG00000108636 ENSMUST00000206929 Gm44650 unprocessed_pseudogene Interval_24051 chr11 29794369 29794708 + 0 NA intron (ENSMUSG00000044072.14, intron 22 of 41) protein_coding-intron (ENSMUSG00000044072.14, intron 22 of 41) 8561 ENSMUSG00000044072.14 ENSMUSG00000044072 ENSMUST00000109452 Eml6 protein_coding Interval_140737 chr6 120957726 120958118 + 0 NA promoter-TSS (ENSMUSG00000051586.17) protein_coding-promoter-TSS (ENSMUSG00000051586.17) -922 ENSMUSG00000108171.1 ENSMUSG00000108171 ENSMUST00000203013 Gm43915 antisense Interval_92859 chr2 66959806 66960904 + 0 NA Intergenic Intergenic 17797 ENSMUSG00000082218.1 ENSMUSG00000082218 ENSMUST00000122405 Gm13602 processed_pseudogene Interval_149065 chr7 92806512 92807061 + 0 NA intron (ENSMUSG00000030643.14, intron 1 of 3) protein_coding-intron (ENSMUSG00000030643.14, intron 1 of 4) 28281 ENSMUSG00000109257.1 ENSMUSG00000109257 ENSMUST00000207434 Gm45200 TEC Interval_162181 chr8 125733756 125735327 + 0 NA intron (ENSMUSG00000031851.14, intron 1 of 1) protein_coding-intron (ENSMUSG00000031851.14, intron 1 of 4) -1294 ENSMUSG00000031851.14 ENSMUSG00000031851 ENSMUST00000152189 Ntpcr protein_coding Interval_168861 chr9 88156540 88157143 + 0 NA Intergenic Intergenic 10872 ENSMUSG00000102075.2 ENSMUSG00000102075 ENSMUST00000189012 Gm5368 processed_pseudogene Interval_125052 chr5 64127235 64127691 + 0 NA intron (ENSMUSG00000029171.12, intron 13 of 13) protein_coding-intron (ENSMUSG00000029171.12, intron 13 of 13) -16785 ENSMUSG00000087954.1 ENSMUSG00000087954 ENSMUST00000157329 Gm22559 snoRNA Interval_29597 chr11 85255598 85256603 + 0 NA Intergenic Intergenic -20970 ENSMUSG00000018481.9 ENSMUSG00000018481 ENSMUST00000018625 Appbp2 protein_coding Interval_80454 chr18 42341739 42342165 + 0 NA TTS (ENSMUSG00000024491.16) protein_coding-TTS (ENSMUSG00000024491.16) 40062 ENSMUSG00000092935.1 ENSMUSG00000092935 ENSMUST00000175194 Gm22697 miRNA Interval_52449 chr14 46514802 46515295 + 0 NA exon (ENSMUSG00000115158.1, exon 2 of 3) lincRNA-exon (ENSMUSG00000115158.1, exon 2 of 3) 1394 ENSMUSG00000115158.1 ENSMUSG00000115158 ENSMUST00000227980 Gm48912 lincRNA Interval_83450 chr18 85646712 85646930 + 0 NA Intergenic Intergenic 69904 ENSMUSG00000117854.1 ENSMUSG00000117854 ENSMUST00000237113 Gm7612 processed_pseudogene Interval_99474 chr2 162075981 162076418 + 0 NA intron (ENSMUSG00000053141.16, intron 1 of 1) protein_coding-intron (ENSMUSG00000053141.16, intron 7 of 30) -276044 ENSMUSG00000053141.16 ENSMUSG00000053141 ENSMUST00000129015 Ptprt protein_coding Interval_76075 chr17 74732784 74733301 + 0 NA intron (ENSMUSG00000024078.7, intron 5 of 19) protein_coding-intron (ENSMUSG00000024078.7, intron 5 of 19) -37024 ENSMUSG00000024078.7 ENSMUSG00000024078 ENSMUST00000234264 Ttc27 protein_coding Interval_109554 chr3 144423605 144424080 + 0 NA Intergenic Intergenic 3830 ENSMUSG00000106416.1 ENSMUSG00000106416 ENSMUST00000198953 Gm5857 processed_pseudogene Interval_35751 chr12 28865117 28866802 + 0 NA intron (ENSMUSG00000036613.8, intron 8 of 8) protein_coding-intron (ENSMUSG00000036613.8, intron 9 of 9) 20423 ENSMUSG00000113325.1 ENSMUSG00000113325 ENSMUST00000220624 Gm48080 processed_pseudogene Interval_7048 chr1 123800644 123801759 + 0 NA intron (ENSMUSG00000036815.17, intron 3 of 25) protein_coding-intron (ENSMUSG00000036815.17, intron 3 of 25) 4220 ENSMUSG00000101994.1 ENSMUSG00000101994 ENSMUST00000188563 Gm18875 processed_pseudogene Interval_25925 chr11 52629604 52630261 + 0 NA Intergenic Intergenic -134702 ENSMUSG00000036264.9 ENSMUSG00000036264 ENSMUST00000036796 Fstl4 protein_coding Interval_103653 chr3 51415449 51417133 + 0 NA promoter-TSS (ENSMUSG00000063273.11) protein_coding-promoter-TSS (ENSMUSG00000063273.11) -7322 ENSMUSG00000103191.1 ENSMUSG00000103191 ENSMUST00000191756 Gm37646 TEC Interval_26900 chr11 61435042 61435525 + 0 NA Intergenic Intergenic -18468 ENSMUSG00000082032.1 ENSMUSG00000082032 ENSMUST00000121719 Gm12271 processed_pseudogene Interval_98540 chr2 153090168 153091030 + 0 NA Intergenic Intergenic -17869 ENSMUSG00000003283.15 ENSMUSG00000003283 ENSMUST00000003370 Hck protein_coding Interval_36396 chr12 43235992 43236634 + 0 NA Intergenic Intergenic -69830 ENSMUSG00000112904.1 ENSMUSG00000112904 ENSMUST00000217732 Gm47030 lincRNA Interval_173986 chrX 122720066 122721058 + 0 NA Intergenic Intergenic -48307 ENSMUSG00000083490.1 ENSMUSG00000083490 ENSMUST00000119309 Gm14940 processed_pseudogene Interval_103461 chr3 41762366 41762649 + 0 NA intron (ENSMUSG00000025766.14, intron 5 of 7) protein_coding-intron (ENSMUSG00000025766.14, intron 5 of 7) -10674 ENSMUSG00000103952.1 ENSMUSG00000103952 ENSMUST00000192254 Gm37268 TEC Interval_139553 chr6 100959265 100960337 + 0 NA Intergenic Intergenic -1188 ENSMUSG00000108056.1 ENSMUSG00000108056 ENSMUST00000203303 Gm43941 processed_pseudogene Interval_158426 chr8 83656699 83657746 + 0 NA exon (ENSMUSG00000019433.9, exon 2 of 3) protein_coding-exon (ENSMUSG00000019433.9, exon 2 of 3) 4524 ENSMUSG00000019433.9 ENSMUSG00000019433 ENSMUST00000212463 Gipc1 protein_coding Interval_68223 chr16 69429167 69429972 + 0 NA Intergenic Intergenic 370812 ENSMUSG00000107073.1 ENSMUSG00000107073 ENSMUST00000201886 4930428D20Rik lincRNA Interval_22846 chr11 16602733 16603216 + 0 NA Intergenic Intergenic 33092 ENSMUSG00000101316.1 ENSMUSG00000101316 ENSMUST00000118481 Gm12663 processed_pseudogene Interval_38269 chr12 76817763 76818659 + 0 NA intron (ENSMUSG00000021062.15, intron 1 of 6) protein_coding-intron (ENSMUSG00000021062.15, intron 1 of 6) 4697 ENSMUSG00000021062.15 ENSMUSG00000021062 ENSMUST00000134124 Rab15 protein_coding Interval_101742 chr3 9326349 9327012 + 0 NA Intergenic Intergenic -75495 ENSMUSG00000088229.1 ENSMUSG00000088229 ENSMUST00000157604 Gm22604 misc_RNA Interval_30205 chr11 90575063 90575891 + 0 NA intron (ENSMUSG00000020546.14, intron 10 of 17) protein_coding-intron (ENSMUSG00000020546.14, intron 10 of 15) -36331 ENSMUSG00000081043.1 ENSMUSG00000081043 ENSMUST00000119669 Gm11512 processed_pseudogene Interval_120841 chr4 150964517 150966058 + 0 NA TTS (ENSMUSG00000064476.1) snRNA-TTS (ENSMUSG00000064476.1) 552 ENSMUSG00000064476.1 ENSMUSG00000064476 ENSMUST00000082542 Gm23405 snRNA Interval_51261 chr14 25592637 25592837 + 0 NA intron (ENSMUSG00000007817.15, intron 6 of 23) protein_coding-intron (ENSMUSG00000007817.15, intron 6 of 23) 58298 ENSMUSG00000093081.1 ENSMUSG00000093081 ENSMUST00000175340 Mir3075 miRNA Interval_25539 chr11 49665444 49666239 + 0 NA TTS (ENSMUSG00000064057.12) protein_coding-TTS (ENSMUSG00000064057.12) 2231 ENSMUSG00000064057.12 ENSMUSG00000064057 ENSMUST00000076006 Scgb3a1 protein_coding Interval_92838 chr2 66183238 66183445 + 0 NA TTS (ENSMUSG00000034848.17) protein_coding-TTS (ENSMUSG00000034848.17) -4495 ENSMUSG00000086671.1 ENSMUSG00000086671 ENSMUST00000128859 Gm13618 antisense Interval_20599 chr10 119294540 119294991 + 0 NA Intergenic Intergenic -25469 ENSMUSG00000112155.1 ENSMUSG00000112155 ENSMUST00000218762 4930477N07Rik lincRNA Interval_93899 chr2 78560197 78560530 + 0 NA Intergenic Intergenic -9626 ENSMUSG00000089462.1 ENSMUSG00000089462 ENSMUST00000158837 Gm23149 misc_RNA Interval_23347 chr11 21634153 21634834 + 0 NA intron (ENSMUSG00000020319.9, intron 1 of 8) protein_coding-intron (ENSMUSG00000020319.9, intron 1 of 17) 49563 ENSMUSG00000083761.1 ENSMUSG00000083761 ENSMUST00000119107 Pgam1-ps1 processed_pseudogene Interval_25031 chr11 43398467 43398679 + 0 NA Intergenic Intergenic 13091 ENSMUSG00000084889.1 ENSMUSG00000084889 ENSMUST00000153791 Gm12148 lincRNA Interval_23477 chr11 22832550 22832946 + 0 NA intron (ENSMUSG00000051650.11, intron 1 of 5) protein_coding-intron (ENSMUSG00000051650.11, intron 1 of 5) -6551 ENSMUSG00000092455.1 ENSMUSG00000092455 ENSMUST00000174690 Gm20456 processed_transcript Interval_35862 chr12 31293280 31295190 + 0 NA intron (ENSMUSG00000002900.17, intron 12 of 32) protein_coding-intron (ENSMUSG00000002900.17, intron 12 of 32) 28941 ENSMUSG00000002900.17 ENSMUSG00000002900 ENSMUST00000172134 Lamb1 protein_coding Interval_116791 chr4 117316694 117317968 + 0 NA intron (ENSMUSG00000028677.19, intron 2 of 2) protein_coding-intron (ENSMUSG00000028677.19, intron 2 of 14) 21187 ENSMUSG00000085749.1 ENSMUSG00000085749 ENSMUST00000139618 Gm12843 antisense Interval_120847 chr4 151000724 151000952 + 0 NA intron (ENSMUSG00000028963.1, intron 3 of 3) protein_coding-intron (ENSMUSG00000028963.1, intron 3 of 3) 3741 ENSMUSG00000028963.1 ENSMUSG00000028963 ENSMUST00000030803 Uts2 protein_coding Interval_123756 chr5 35244171 35244734 + 0 NA Intergenic Intergenic -33867 ENSMUSG00000045318.6 ENSMUSG00000045318 ENSMUST00000049545 Adra2c protein_coding Interval_143309 chr7 5079527 5080968 + 0 NA promoter-TSS (ENSMUSG00000035203.16) protein_coding-promoter-TSS (ENSMUSG00000035203.16) -3508 ENSMUSG00000035203.16 ENSMUSG00000035203 ENSMUST00000155436 Epn1 protein_coding Interval_115958 chr4 106599126 106599992 + 0 NA intron (ENSMUSG00000054362.9, intron 9 of 10) protein_coding-intron (ENSMUSG00000054362.9, intron 9 of 10) -10451 ENSMUSG00000085023.1 ENSMUSG00000085023 ENSMUST00000146976 Gm12744 antisense Interval_123096 chr5 29677181 29677557 + 0 NA Intergenic Intergenic -14053 ENSMUSG00000104648.1 ENSMUSG00000104648 ENSMUST00000195937 Gm42570 processed_pseudogene Interval_27431 chr11 67647781 67648297 + 0 NA intron (ENSMUSG00000033066.16, intron 4 of 7) protein_coding-intron (ENSMUSG00000033066.16, intron 5 of 14) -47287 ENSMUSG00000020907.1 ENSMUSG00000020907 ENSMUST00000021290 Rcvrn protein_coding Interval_81380 chr18 59962763 59964054 + 0 NA Intergenic Intergenic 65854 ENSMUSG00000117999.1 ENSMUSG00000117999 ENSMUST00000237612 Gm18217 processed_pseudogene Interval_166712 chr9 62210957 62211154 + 0 NA Intergenic Intergenic -30615 ENSMUSG00000110826.1 ENSMUSG00000110826 ENSMUST00000217557 Gm47262 lincRNA Interval_163749 chr9 25243956 25244174 + 0 NA Intergenic Intergenic -8601 ENSMUSG00000001833.17 ENSMUSG00000001833 ENSMUST00000214360 Septin7 protein_coding Interval_136626 chr6 56797011 56798258 + 0 NA promoter-TSS (ENSMUSG00000059486.11) protein_coding-promoter-TSS (ENSMUSG00000059486.11) 43 ENSMUSG00000108080.1 ENSMUSG00000108080 ENSMUST00000203397 Gm10209 TEC Interval_53245 chr14 55550861 55552109 + 0 NA TTS (ENSMUSG00000040618.7) protein_coding-TTS (ENSMUSG00000040618.7) 8923 ENSMUSG00000053588.4 ENSMUSG00000053588 ENSMUST00000066106 A730061H03Rik bidirectional_promoter_lncRNA Interval_77493 chr17 90224652 90224960 + 0 NA intron (ENSMUSG00000024109.18, intron 2 of 2) protein_coding-intron (ENSMUSG00000024109.18, intron 16 of 20) -37746 ENSMUSG00000092706.1 ENSMUSG00000092706 ENSMUST00000174965 Gm24510 miRNA Interval_166503 chr9 60166818 60167354 + 0 NA intron (ENSMUSG00000032289.15, intron 6 of 16) protein_coding-intron (ENSMUSG00000032289.15, intron 7 of 17) -124907 ENSMUSG00000088090.1 ENSMUSG00000088090 ENSMUST00000157465 Gm23668 rRNA Interval_69820 chr16 96969395 96970555 + 0 NA intron (ENSMUSG00000050272.10, intron 3 of 32) protein_coding-intron (ENSMUSG00000050272.10, intron 3 of 32) 51243 ENSMUSG00000117324.1 ENSMUSG00000117324 ENSMUST00000232718 Gm32432 antisense Interval_58610 chr15 36555167 36556136 + 0 NA promoter-TSS (ENSMUSG00000013611.14) protein_coding-promoter-TSS (ENSMUSG00000013611.14) -9964 ENSMUSG00000013611.14 ENSMUSG00000013611 ENSMUST00000160936 Snx31 protein_coding Interval_111962 chr4 32852376 32853037 + 0 NA intron (ENSMUSG00000040183.13, intron 1 of 3) protein_coding-intron (ENSMUSG00000040183.13, intron 3 of 16) 7977 ENSMUSG00000040183.13 ENSMUSG00000040183 ENSMUST00000149650 Ankrd6 protein_coding Interval_153321 chr7 143601859 143602185 + 0 NA TTS (ENSMUSG00000086828.1) antisense-TTS (ENSMUSG00000086828.1) 1888 ENSMUSG00000086828.1 ENSMUSG00000086828 ENSMUST00000141299 Gm15579 antisense Interval_8725 chr1 150114801 150116198 + 0 NA Intergenic Intergenic 15167 ENSMUSG00000032487.8 ENSMUSG00000032487 ENSMUST00000190784 Ptgs2 protein_coding Interval_140892 chr6 122626245 122628606 + 0 NA intron (ENSMUSG00000046323.8, intron 1 of 3) protein_coding-intron (ENSMUSG00000046323.8, intron 1 of 3) 672 ENSMUSG00000046323.8 ENSMUSG00000046323 ENSMUST00000123429 Dppa3 protein_coding Interval_4785 chr1 78619066 78619516 + 0 NA exon (ENSMUSG00000100562.1, exon 2 of 2) lincRNA-exon (ENSMUSG00000100562.1, exon 2 of 2) 3824 ENSMUSG00000100562.1 ENSMUSG00000100562 ENSMUST00000186132 Gm29611 lincRNA Interval_109612 chr3 145152143 145152742 + 0 NA intron (ENSMUSG00000028256.16, intron 3 of 3) protein_coding-intron (ENSMUSG00000028256.16, intron 14 of 14) 3424 ENSMUSG00000028256.16 ENSMUSG00000028256 ENSMUST00000200353 Odf2l protein_coding Interval_132500 chr5 145505638 145506213 + 0 NA exon (ENSMUSG00000105270.1, exon 1 of 1) TEC-exon (ENSMUSG00000105270.1, exon 1 of 1) 1129 ENSMUSG00000105270.1 ENSMUSG00000105270 ENSMUST00000197875 Gm42863 TEC Interval_119081 chr4 135404564 135405354 + 0 NA Intergenic Intergenic -1303 ENSMUSG00000081136.1 ENSMUSG00000081136 ENSMUST00000120372 Gm12990 processed_pseudogene Interval_164425 chr9 36933599 36934280 + 0 NA TTS (ENSMUSG00000035934.16) protein_coding-TTS (ENSMUSG00000035934.16) -81819 ENSMUSG00000093721.1 ENSMUSG00000093721 ENSMUST00000176020 Gm3896 antisense Interval_170679 chr9 110062011 110063146 + 0 NA promoter-TSS (ENSMUSG00000032479.15) protein_coding-promoter-TSS (ENSMUSG00000032479.15) -15471 ENSMUSG00000032479.15 ENSMUSG00000032479 ENSMUST00000199985 Map4 protein_coding Interval_174676 chrX 162831626 162832728 + 0 NA Intergenic Intergenic -2723 ENSMUSG00000038344.14 ENSMUSG00000038344 ENSMUST00000150080 Txlng protein_coding Interval_41440 chr12 113947828 113948712 + 0 NA TTS (ENSMUSG00000076655.2) IG_V_gene-TTS (ENSMUSG00000076655.2) 526 ENSMUSG00000076655.2 ENSMUSG00000076655 ENSMUST00000103464 Ighv4-1 IG_V_gene Interval_59683 chr15 57928398 57929241 + 0 NA intron (ENSMUSG00000022364.14, intron 3 of 13) protein_coding-intron (ENSMUSG00000022364.14, intron 4 of 20) 12806 ENSMUSG00000022364.14 ENSMUSG00000022364 ENSMUST00000161329 Tbc1d31 protein_coding Interval_46075 chr13 60855534 60856048 + 0 NA intron (ENSMUSG00000114487.1, intron 1 of 4) protein_coding-intron (ENSMUSG00000050345.9, intron 1 of 7) 8684 ENSMUSG00000050345.9 ENSMUSG00000050345 ENSMUST00000091569 4930486L24Rik protein_coding Interval_34642 chr12 8301078 8302493 + 0 NA exon (ENSMUSG00000037660.5, exon 1 of 2) protein_coding-exon (ENSMUSG00000037660.5, exon 1 of 2) 169 ENSMUSG00000037660.5 ENSMUSG00000037660 ENSMUST00000037313 Gdf7 protein_coding Interval_41639 chr12 117289636 117290020 + 0 NA intron (ENSMUSG00000101930.1, intron 1 of 1) antisense-intron (ENSMUSG00000101930.1, intron 1 of 1) 39011 ENSMUSG00000065538.1 ENSMUSG00000065538 ENSMUST00000083604 Mir153 miRNA Interval_172668 chrX 41931789 41932398 + 0 NA Intergenic Intergenic -8266 ENSMUSG00000080798.3 ENSMUSG00000080798 ENSMUST00000121100 Gm5135 processed_pseudogene Interval_21560 chr10 129908763 129908958 + 0 NA TTS (ENSMUSG00000063715.2) protein_coding-TTS (ENSMUSG00000063715.2) -2993 ENSMUSG00000061961.3 ENSMUSG00000061961 ENSMUST00000071557 Olfr815 protein_coding Interval_12012 chr1 188797658 188797862 + 0 NA exon (ENSMUSG00000026609.15, exon 49 of 71) protein_coding-exon (ENSMUSG00000026609.15, exon 49 of 71) 37284 ENSMUSG00000084550.1 ENSMUSG00000084550 ENSMUST00000122601 Gm25269 snRNA Interval_104686 chr3 69407967 69408497 + 0 NA intron (ENSMUSG00000027784.10, intron 1 of 3) protein_coding-intron (ENSMUSG00000027784.10, intron 1 of 3) 24136 ENSMUSG00000090743.1 ENSMUSG00000090743 ENSMUST00000165161 Gm17213 processed_pseudogene Interval_121803 chr5 8392618 8392968 + 0 NA Intergenic Intergenic 29876 ENSMUSG00000002297.16 ENSMUSG00000002297 ENSMUST00000198785 Dbf4 protein_coding Interval_164104 chr9 31517731 31517931 + 0 NA Intergenic Intergenic -41778 ENSMUSG00000111853.1 ENSMUSG00000111853 ENSMUST00000216695 Gm31408 lincRNA Interval_120987 chr4 152061834 152063646 + 0 NA Intergenic Intergenic -13546 ENSMUSG00000039713.17 ENSMUSG00000039713 ENSMUST00000142412 Plekhg5 protein_coding Interval_65871 chr16 29945524 29947013 + 0 NA exon (ENSMUSG00000097313.2, exon 1 of 1) processed_transcript-exon (ENSMUSG00000097313.2, exon 1 of 1) 486 ENSMUSG00000097313.2 ENSMUSG00000097313 ENSMUST00000232356 Gm26569 processed_transcript Interval_32882 chr11 112781161 112785448 + 0 NA intron (ENSMUSG00000000567.5, intron 1 of 2) protein_coding-intron (ENSMUSG00000000567.5, intron 1 of 2) 1080 ENSMUSG00000000567.5 ENSMUSG00000000567 ENSMUST00000000579 Sox9 protein_coding Interval_26083 chr11 54054239 54055912 + 0 NA TTS (ENSMUSG00000020388.12) protein_coding-TTS (ENSMUSG00000020388.12) 9493 ENSMUSG00000020388.12 ENSMUSG00000020388 ENSMUST00000151948 Pdlim4 protein_coding Interval_135400 chr6 39074032 39074924 + 0 NA intron (ENSMUSG00000029925.13, intron 10 of 11) protein_coding-intron (ENSMUSG00000029925.13, intron 10 of 12) -6880 ENSMUSG00000100121.1 ENSMUSG00000100121 ENSMUST00000186189 1700025N23Rik antisense Interval_92187 chr2 55613200 55613394 + 0 NA Intergenic Intergenic -162251 ENSMUSG00000082971.1 ENSMUSG00000082971 ENSMUST00000120782 Gm13517 processed_pseudogene Interval_73637 chr17 42048876 42049544 + 0 NA Intergenic Intergenic -266779 ENSMUSG00000042256.5 ENSMUSG00000042256 ENSMUST00000232968 Ptchd4 protein_coding Interval_129035 chr5 117004333 117004571 + 0 NA Intergenic Intergenic -54360 ENSMUSG00000107327.1 ENSMUSG00000107327 ENSMUST00000201054 Gm7478 processed_pseudogene Interval_86716 chr19 42933322 42933977 + 0 NA intron (ENSMUSG00000074852.4, intron 6 of 8) protein_coding-intron (ENSMUSG00000074852.4, intron 6 of 11) 154539 ENSMUSG00000090235.1 ENSMUSG00000090235 ENSMUST00000160001 Gm16244 processed_transcript Interval_52415 chr14 45816646 45817150 + 0 NA intron (ENSMUSG00000085866.1, intron 1 of 3) lincRNA-intron (ENSMUSG00000085866.1, intron 1 of 3) 41648 ENSMUSG00000084276.1 ENSMUSG00000084276 ENSMUST00000121261 Gm8317 processed_pseudogene Interval_13945 chr10 24895910 24896102 + 0 NA intron (ENSMUSG00000019984.16, intron 16 of 23) protein_coding-intron (ENSMUSG00000019984.16, intron 15 of 28) 2026 ENSMUSG00000096809.1 ENSMUSG00000096809 ENSMUST00000179967 Gm23410 snRNA Interval_98895 chr2 155848363 155850128 + 0 NA intron (ENSMUSG00000005882.18, intron 2 of 2) protein_coding-intron (ENSMUSG00000005882.18, intron 6 of 6) -14391 ENSMUSG00000074647.4 ENSMUSG00000074647 ENSMUST00000239423 Fam83c protein_coding Interval_58544 chr15 35940557 35940911 + 0 NA Intergenic Intergenic -3565 ENSMUSG00000014313.15 ENSMUSG00000014313 ENSMUST00000227231 Cox6c protein_coding Interval_85493 chr19 27475884 27476126 + 0 NA Intergenic Intergenic -36503 ENSMUSG00000118072.1 ENSMUSG00000118072 ENSMUST00000235994 Gm50101 processed_pseudogene Interval_168151 chr9 77536581 77536947 + 0 NA intron (ENSMUSG00000032352.16, intron 1 of 13) protein_coding-intron (ENSMUSG00000032352.16, intron 1 of 13) 8084 ENSMUSG00000032352.16 ENSMUSG00000032352 ENSMUST00000183980 Lrrc1 protein_coding Interval_30722 chr11 96124049 96124948 + 0 NA Intergenic Intergenic -9288 ENSMUSG00000038756.13 ENSMUSG00000038756 ENSMUST00000107680 Ttll6 protein_coding Interval_83102 chr18 81321554 81322792 + 0 NA intron (ENSMUSG00000117717.1, intron 3 of 4) lincRNA-intron (ENSMUSG00000117717.1, intron 3 of 4) 57482 ENSMUSG00000117717.1 ENSMUSG00000117717 ENSMUST00000236674 Gm30192 lincRNA Interval_116971 chr4 118565997 118566847 + 0 NA intron (ENSMUSG00000028730.14, intron 20 of 21) protein_coding-intron (ENSMUSG00000028730.14, intron 21 of 22) -23133 ENSMUSG00000050854.9 ENSMUSG00000050854 ENSMUST00000154025 Tmem125 protein_coding Interval_146378 chr7 45595197 45596094 + 0 NA Intergenic Intergenic -1495 ENSMUSG00000109632.1 ENSMUSG00000109632 ENSMUST00000209936 Gm31479 lincRNA Interval_89806 chr2 25568729 25568997 + 0 NA intron (ENSMUSG00000026941.16, intron 6 of 25) protein_coding-intron (ENSMUSG00000026941.16, intron 7 of 28) 1391 ENSMUSG00000026941.16 ENSMUSG00000026941 ENSMUST00000142811 Mamdc4 protein_coding Interval_116378 chr4 110677338 110677618 + 0 NA intron (ENSMUSG00000061298.14, intron 3 of 12) protein_coding-intron (ENSMUSG00000061298.14, intron 3 of 12) -163746 ENSMUSG00000082348.1 ENSMUSG00000082348 ENSMUST00000121546 Gm12807 processed_pseudogene Interval_66725 chr16 36649121 36650394 + 0 NA intron (ENSMUSG00000022901.13, intron 1 of 7) protein_coding-intron (ENSMUSG00000022901.13, intron 1 of 7) -44276 ENSMUSG00000022900.14 ENSMUSG00000022900 ENSMUST00000128084 Ildr1 protein_coding Interval_51300 chr14 25840495 25843135 + 0 NA promoter-TSS (ENSMUSG00000021866.15) protein_coding-promoter-TSS (ENSMUSG00000021866.15) -368 ENSMUSG00000021866.15 ENSMUSG00000021866 ENSMUST00000133547 Anxa11 protein_coding Interval_127518 chr5 104804970 104805522 + 0 NA Intergenic Intergenic 29467 ENSMUSG00000048334.8 ENSMUSG00000048334 ENSMUST00000055593 Gm8258 processed_pseudogene Interval_66834 chr16 37972331 37972549 + 0 NA intron (ENSMUSG00000046961.8, intron 3 of 9) protein_coding-intron (ENSMUSG00000046961.8, intron 3 of 9) -7647 ENSMUSG00000065188.1 ENSMUSG00000065188 ENSMUST00000083254 Gm25140 snRNA Interval_109345 chr3 139424143 139424577 + 0 NA intron (ENSMUSG00000047940.13, intron 11 of 13) protein_coding-intron (ENSMUSG00000047940.13, intron 11 of 13) -6497 ENSMUSG00000065675.1 ENSMUSG00000065675 ENSMUST00000083741 Gm24260 snRNA Interval_40005 chr12 100444959 100445187 + 0 NA promoter-TSS (ENSMUSG00000113864.1) TEC-promoter-TSS (ENSMUSG00000113864.1) -413 ENSMUSG00000113864.1 ENSMUSG00000113864 ENSMUST00000222952 Gm48381 TEC Interval_91337 chr2 37875776 37876096 + 0 NA intron (ENSMUSG00000035392.17, intron 12 of 18) protein_coding-intron (ENSMUSG00000035392.17, intron 13 of 21) 84765 ENSMUSG00000035403.10 ENSMUSG00000035403 ENSMUST00000137693 Crb2 protein_coding Interval_122812 chr5 25698102 25698379 + 0 NA exon (ENSMUSG00000028933.11, exon 2 of 2) protein_coding-exon (ENSMUSG00000028933.11, exon 2 of 2) 7533 ENSMUSG00000028933.11 ENSMUSG00000028933 ENSMUST00000131308 Xrcc2 protein_coding Interval_65666 chr16 24996915 24997407 + 0 NA Intergenic Intergenic -62478 ENSMUSG00000096960.1 ENSMUSG00000096960 ENSMUST00000181655 A230028O05Rik lincRNA Interval_27600 chr11 68973010 68974428 + 0 NA promoter-TSS (ENSMUSG00000032892.14) protein_coding-promoter-TSS (ENSMUSG00000032892.14) -351 ENSMUSG00000032892.14 ENSMUSG00000032892 ENSMUST00000133099 Rangrf protein_coding Interval_142518 chr6 143034595 143035755 + 0 NA intron (ENSMUSG00000030279.15, intron 14 of 24) protein_coding-intron (ENSMUSG00000030279.15, intron 15 of 24) 45565 ENSMUSG00000107839.1 ENSMUSG00000107839 ENSMUST00000203259 4930434O05Rik lincRNA Interval_117130 chr4 119816808 119817069 + 0 NA intron (ENSMUSG00000028634.17, intron 1 of 1) protein_coding-intron (ENSMUSG00000028634.17, intron 1 of 8) -158157 ENSMUSG00000032978.14 ENSMUSG00000032978 ENSMUST00000044426 Guca2b protein_coding Interval_71981 chr17 27421135 27421641 + 0 NA TTS (ENSMUSG00000063239.17) protein_coding-TTS (ENSMUSG00000063239.17) -16141 ENSMUSG00000116682.1 ENSMUSG00000116682 ENSMUST00000231804 Gm49789 TEC Interval_160404 chr8 109014593 109015500 + 0 NA Intergenic Intergenic -60199 ENSMUSG00000097393.8 ENSMUSG00000097393 ENSMUST00000181098 D030068K23Rik lincRNA Interval_76842 chr17 84452460 84452761 + 0 NA intron (ENSMUSG00000024251.10, intron 7 of 10) protein_coding-intron (ENSMUSG00000024251.10, intron 7 of 37) 61181 ENSMUSG00000096415.1 ENSMUSG00000096415 ENSMUST00000179017 Gm24722 snRNA Interval_35303 chr12 20208941 20209259 + 0 NA intron (ENSMUSG00000116736.1, intron 1 of 1) processed_transcript-intron (ENSMUSG00000116736.1, intron 1 of 1) 12184 ENSMUSG00000113964.1 ENSMUSG00000113964 ENSMUST00000220587 Gm48667 processed_pseudogene Interval_21170 chr10 127023647 127024048 + 0 NA TTS (ENSMUSG00000040521.11) protein_coding-TTS (ENSMUSG00000040521.11) 6956 ENSMUSG00000040521.11 ENSMUSG00000040521 ENSMUST00000134917 Tsfm protein_coding Interval_109029 chr3 135271622 135272007 + 0 NA TTS (ENSMUSG00000045328.11) protein_coding-TTS (ENSMUSG00000045328.11) -9469 ENSMUSG00000028167.15 ENSMUSG00000028167 ENSMUST00000154869 Bdh2 protein_coding Interval_63953 chr16 4763375 4763756 + 0 NA intron (ENSMUSG00000004070.15, intron 2 of 3) protein_coding-intron (ENSMUSG00000004070.15, intron 2 of 5) -14178 ENSMUSG00000086464.2 ENSMUSG00000086464 ENSMUST00000127697 Gm15835 lincRNA Interval_86154 chr19 37125082 37125332 + 0 NA intron (ENSMUSG00000039652.16, intron 4 of 10) protein_coding-intron (ENSMUSG00000039652.16, intron 4 of 10) 23955 ENSMUSG00000080544.1 ENSMUSG00000080544 ENSMUST00000116894 Gm22714 ribozyme Interval_81666 chr18 62993595 62995699 + 0 NA TTS (ENSMUSG00000024581.13) protein_coding-TTS (ENSMUSG00000024581.13) 16800 ENSMUSG00000024581.13 ENSMUSG00000024581 ENSMUST00000236914 Napg protein_coding Interval_49031 chr13 107084711 107086403 + 0 NA intron (ENSMUSG00000114311.1, intron 2 of 3) lincRNA-intron (ENSMUSG00000114311.1, intron 2 of 3) 21864 ENSMUSG00000114311.1 ENSMUSG00000114311 ENSMUST00000224729 Gm31452 lincRNA Interval_47601 chr13 89779871 89780598 + 0 NA intron (ENSMUSG00000021615.13, intron 7 of 8) antisense-intron (ENSMUSG00000089940.1, intron 1 of 1) -39837 ENSMUSG00000021614.16 ENSMUSG00000021614 ENSMUST00000162715 Vcan protein_coding Interval_70402 chr17 9796821 9798417 + 0 NA Intergenic Intergenic -21753 ENSMUSG00000117264.1 ENSMUSG00000117264 ENSMUST00000233594 4930452A19Rik processed_transcript Interval_67218 chr16 44508977 44509314 + 0 NA intron (ENSMUSG00000022687.12, intron 3 of 18) protein_coding-intron (ENSMUSG00000022687.12, intron 3 of 18) 48984 ENSMUSG00000093046.1 ENSMUSG00000093046 ENSMUST00000175305 Mir3081 miRNA Interval_135657 chr6 42380153 42381929 + 0 NA TTS (ENSMUSG00000101268.6) antisense-TTS (ENSMUSG00000101268.6) -7773 ENSMUSG00000029859.6 ENSMUSG00000029859 ENSMUST00000204238 Epha1 protein_coding Interval_33890 chr11 119213346 119214489 + 0 NA intron (ENSMUSG00000039976.4, intron 1 of 11) protein_coding-intron (ENSMUSG00000039976.4, intron 1 of 11) -6243 ENSMUSG00000087404.1 ENSMUSG00000087404 ENSMUST00000143291 Gm11752 lincRNA Interval_115814 chr4 104829952 104830984 + 0 NA intron (ENSMUSG00000035031.15, intron 6 of 9) protein_coding-intron (ENSMUSG00000035031.15, intron 7 of 11) 26055 ENSMUSG00000035031.15 ENSMUSG00000035031 ENSMUST00000064873 C8a protein_coding Interval_8174 chr1 136243775 136243946 + 0 NA Intergenic Intergenic -3802 ENSMUSG00000103594.1 ENSMUSG00000103594 ENSMUST00000194339 A430034D21Rik lincRNA Interval_1113 chr1 15820379 15821159 + 0 NA exon (ENSMUSG00000025925.14, exon 5 of 5) protein_coding-exon (ENSMUSG00000025925.14, exon 5 of 5) 13128 ENSMUSG00000025925.14 ENSMUSG00000025925 ENSMUST00000188684 Terf1 protein_coding Interval_30745 chr11 96234707 96235687 + 0 NA Intergenic Intergenic -13436 ENSMUSG00000083337.1 ENSMUSG00000083337 ENSMUST00000119837 Gm11539 processed_pseudogene Interval_31450 chr11 100749484 100750306 + 0 NA intron (ENSMUSG00000035355.15, intron 8 of 16) protein_coding-intron (ENSMUSG00000035355.15, intron 8 of 16) 10047 ENSMUSG00000035355.15 ENSMUSG00000035355 ENSMUST00000107363 Kcnh4 protein_coding Interval_59410 chr15 52522652 52522918 + 0 NA Intergenic Intergenic 23129 ENSMUSG00000094481.1 ENSMUSG00000094481 ENSMUST00000178490 Gm23267 snoRNA Interval_139678 chr6 106768702 106769868 + 0 NA promoter-TSS (ENSMUSG00000013736.16) protein_coding-promoter-TSS (ENSMUSG00000013736.16) -1 ENSMUSG00000013736.16 ENSMUSG00000013736 ENSMUST00000204782 Trnt1 protein_coding Interval_100279 chr2 168127865 168129120 + 0 NA intron (ENSMUSG00000118526.2, intron 3 of 7) unitary_pseudogene-intron (ENSMUSG00000118526.2, intron 3 of 7) 13615 ENSMUSG00000118526.2 ENSMUSG00000118526 ENSMUST00000239040 AL831766.1 unitary_pseudogene Interval_34686 chr12 8689345 8690650 + 0 NA intron (ENSMUSG00000020594.14, intron 2 of 4) protein_coding-intron (ENSMUSG00000020594.14, intron 1 of 19) 15863 ENSMUSG00000020594.14 ENSMUSG00000020594 ENSMUST00000171608 Pum2 protein_coding Interval_54244 chr14 66836053 66836236 + 0 NA intron (ENSMUSG00000022048.8, intron 3 of 13) protein_coding-intron (ENSMUSG00000022048.8, intron 3 of 13) 32544 ENSMUSG00000022048.8 ENSMUSG00000022048 ENSMUST00000022629 Dpysl2 protein_coding Interval_50523 chr14 14620514 14621672 + 0 NA Intergenic Intergenic 31147 ENSMUSG00000114574.1 ENSMUSG00000114574 ENSMUST00000223638 Gm47685 processed_pseudogene Interval_61553 chr15 82293118 82294317 + 0 NA TTS (ENSMUSG00000022456.18) protein_coding-TTS (ENSMUSG00000022456.18) -5237 ENSMUSG00000022455.4 ENSMUSG00000022455 ENSMUST00000023089 Wbp2nl protein_coding Interval_133040 chr5 149456468 149456959 + 0 NA intron (ENSMUSG00000029660.10, intron 2 of 5) protein_coding-intron (ENSMUSG00000029660.10, intron 3 of 6) 14852 ENSMUSG00000107164.1 ENSMUSG00000107164 ENSMUST00000201035 4933425D22Rik sense_intronic Interval_71975 chr17 27384890 27386222 + 0 NA Intergenic Intergenic -12591 ENSMUSG00000116970.1 ENSMUSG00000116970 ENSMUST00000232032 Gm49796 lincRNA Interval_1597 chr1 28812414 28812656 + 0 NA Intergenic Intergenic -9814 ENSMUSG00000081557.2 ENSMUSG00000081557 ENSMUST00000122295 Gm5697 processed_pseudogene Interval_97388 chr2 135702869 135704462 + 0 NA intron (ENSMUSG00000039943.16, intron 1 of 2) protein_coding-intron (ENSMUSG00000039943.16, intron 1 of 28) -10511 ENSMUSG00000085709.1 ENSMUSG00000085709 ENSMUST00000152250 Gm14211 lincRNA Interval_81189 chr18 56193501 56193899 + 0 NA TTS (ENSMUSG00000088440.1) snoRNA-TTS (ENSMUSG00000088440.1) 701 ENSMUSG00000088440.1 ENSMUSG00000088440 ENSMUST00000157815 Gm23555 snoRNA Interval_135394 chr6 38960929 38961656 + 0 NA intron (ENSMUSG00000106737.1, intron 2 of 4) protein_coding-intron (ENSMUSG00000029925.13, intron 3 of 12) -10573 ENSMUSG00000029925.13 ENSMUSG00000029925 ENSMUST00000161360 Tbxas1 protein_coding Interval_170863 chr9 111311197 111313072 + 0 NA promoter-TSS (ENSMUSG00000062296.8) protein_coding-promoter-TSS (ENSMUSG00000062296.8) 38032 ENSMUSG00000046785.8 ENSMUSG00000046785 ENSMUST00000200053 Epm2aip1 protein_coding Interval_130619 chr5 129248840 129249270 + 0 NA Intergenic Intergenic -115065 ENSMUSG00000104681.1 ENSMUSG00000104681 ENSMUST00000199076 Gm43001 lincRNA Interval_40779 chr12 108317308 108318378 + 0 NA intron (ENSMUSG00000021260.8, intron 3 of 7) protein_coding-intron (ENSMUSG00000021260.8, intron 3 of 8) 10187 ENSMUSG00000097847.1 ENSMUSG00000097847 ENSMUST00000181875 4930478K11Rik antisense Interval_30179 chr11 90214109 90214615 + 0 NA intron (ENSMUSG00000109967.1, intron 3 of 6) protein_coding-intron (ENSMUSG00000110344.1, intron 2 of 3) 26187 ENSMUSG00000109967.1 ENSMUSG00000109967 ENSMUST00000211334 Gm45883 processed_transcript Interval_67972 chr16 62259879 62260310 + 0 NA Intergenic Intergenic 162633 ENSMUSG00000116619.1 ENSMUSG00000116619 ENSMUST00000232249 Gm49615 lincRNA Interval_41780 chr12 119056738 119057221 + 0 NA Intergenic Intergenic 10451 ENSMUSG00000114030.1 ENSMUSG00000114030 ENSMUST00000221798 Gm18921 processed_pseudogene Interval_115282 chr4 95270828 95272049 + 0 NA Intergenic Intergenic 78125 ENSMUSG00000084918.1 ENSMUSG00000084918 ENSMUST00000126143 Gm12708 lincRNA Interval_117621 chr4 125099097 125100204 + 0 NA intron (ENSMUSG00000028863.13, intron 4 of 7) protein_coding-intron (ENSMUSG00000028863.13, intron 4 of 5) 14486 ENSMUSG00000028863.13 ENSMUSG00000028863 ENSMUST00000155212 Meaf6 protein_coding Interval_174540 chrX 157458869 157459493 + 0 NA exon (ENSMUSG00000071708.11, exon 6 of 6) protein_coding-exon (ENSMUSG00000071708.11, exon 6 of 6) 1680 ENSMUSG00000071708.11 ENSMUSG00000071708 ENSMUST00000123770 Sms protein_coding Interval_120347 chr4 148050735 148051502 + 0 NA intron (ENSMUSG00000029009.17, intron 5 of 13) protein_coding-intron (ENSMUSG00000029009.17, intron 5 of 11) -1560 ENSMUSG00000029009.17 ENSMUSG00000029009 ENSMUST00000156113 Mthfr protein_coding Interval_126156 chr5 80108101 80109140 + 0 NA Intergenic Intergenic 9712 ENSMUSG00000095594.1 ENSMUSG00000095594 ENSMUST00000177635 Gm24304 snRNA Interval_140545 chr6 119431895 119432148 + 0 NA TTS (ENSMUSG00000030170.14) protein_coding-TTS (ENSMUSG00000030170.14) -14546 ENSMUSG00000030168.13 ENSMUSG00000030168 ENSMUST00000189710 Adipor2 protein_coding Interval_24730 chr11 36318140 36318512 + 0 NA intron (ENSMUSG00000049336.16, intron 3 of 28) protein_coding-intron (ENSMUSG00000049336.16, intron 3 of 28) 40285 ENSMUSG00000086375.1 ENSMUSG00000086375 ENSMUST00000123278 Gm12127 antisense Interval_117038 chr4 119157075 119158507 + 0 NA Intergenic Intergenic 16065 ENSMUSG00000045268.13 ENSMUSG00000045268 ENSMUST00000154226 Zfp691 protein_coding Interval_102913 chr3 32745286 32745841 + 0 NA intron (ENSMUSG00000027673.12, intron 2 of 4) protein_coding-intron (ENSMUSG00000027673.12, intron 2 of 5) -7958 ENSMUSG00000037531.8 ENSMUSG00000037531 ENSMUST00000192021 Mrpl47 protein_coding Interval_1939 chr1 34749102 34751599 + 0 NA promoter-TSS (ENSMUSG00000037509.21) protein_coding-promoter-TSS (ENSMUSG00000037509.21) -2425 ENSMUSG00000102537.1 ENSMUSG00000102537 ENSMUST00000192878 Gm37224 processed_pseudogene Interval_97253 chr2 132652550 132653276 + 0 NA TTS (ENSMUSG00000074783.10) lincRNA-TTS (ENSMUSG00000074783.10) -9329 ENSMUSG00000081445.1 ENSMUSG00000081445 ENSMUST00000121008 Rpl23a-ps4 processed_pseudogene Interval_172 JH584304.1 97884 98431 + 0 NA NA NA NA NA Interval_174564 chrX 157951839 157952115 + 0 NA intron (ENSMUSG00000025658.16, intron 5 of 20) protein_coding-intron (ENSMUSG00000025658.16, intron 5 of 21) -85106 ENSMUSG00000025658.16 ENSMUSG00000025658 ENSMUST00000139664 Cnksr2 protein_coding Interval_44909 chr13 49684346 49684789 + 0 NA TTS (ENSMUSG00000087963.1) snoRNA-TTS (ENSMUSG00000087963.1) 266 ENSMUSG00000087963.1 ENSMUSG00000087963 ENSMUST00000157338 Gm25394 snoRNA Interval_150518 chr7 111762895 111763472 + 0 NA intron (ENSMUSG00000038296.14, intron 1 of 10) protein_coding-intron (ENSMUSG00000038296.14, intron 1 of 10) 16794 ENSMUSG00000038296.14 ENSMUSG00000038296 ENSMUST00000106663 Galnt18 protein_coding Interval_136282 chr6 52486475 52487046 + 0 NA Intergenic Intergenic -5691 ENSMUSG00000107895.1 ENSMUSG00000107895 ENSMUST00000203771 1700094M24Rik lincRNA Interval_129222 chr5 118291474 118291697 + 0 NA Intergenic Intergenic 25136 ENSMUSG00000095477.1 ENSMUSG00000095477 ENSMUST00000104098 Gm25076 snoRNA Interval_51652 chr14 31128444 31129247 + 0 NA promoter-TSS (ENSMUSG00000058351.11) protein_coding-promoter-TSS (ENSMUSG00000058351.11) 111 ENSMUSG00000058351.11 ENSMUSG00000058351 ENSMUST00000090205 Smim4 protein_coding Interval_111261 chr4 16119507 16119816 + 0 NA Intergenic Intergenic 1227 ENSMUSG00000081679.1 ENSMUSG00000081679 ENSMUST00000117437 Gm11874 processed_pseudogene Interval_111404 chr4 20838358 20838558 + 0 NA Intergenic Intergenic -59891 ENSMUSG00000055761.14 ENSMUSG00000055761 ENSMUST00000102998 Nkain3 protein_coding Interval_133458 chr6 5297470 5298711 + 0 NA intron (ENSMUSG00000032667.17, intron 1 of 4) protein_coding-intron (ENSMUSG00000032667.17, intron 1 of 8) -17756 ENSMUSG00000032667.17 ENSMUSG00000032667 ENSMUST00000203882 Pon2 protein_coding Interval_107209 chr3 104637932 104639617 + 0 NA exon (ENSMUSG00000032902.1, exon 1 of 5) protein_coding-exon (ENSMUSG00000032902.1, exon 1 of 5) 106 ENSMUSG00000032902.1 ENSMUSG00000032902 ENSMUST00000046212 Slc16a1 protein_coding Interval_87134 chr19 46374392 46375282 + 0 NA exon (ENSMUSG00000025227.14, exon 9 of 9) protein_coding-exon (ENSMUSG00000025227.14, exon 9 of 9) 15801 ENSMUSG00000065204.1 ENSMUSG00000065204 ENSMUST00000083270 Gm24610 snoRNA Interval_125750 chr5 73884949 73885180 + 0 NA Intergenic Intergenic -27832 ENSMUSG00000107027.1 ENSMUSG00000107027 ENSMUST00000202487 1700019F05Rik lincRNA Interval_114469 chr4 79884180 79884739 + 0 NA Intergenic Intergenic 10108 ENSMUSG00000084248.1 ENSMUSG00000084248 ENSMUST00000118621 Gm11409 processed_pseudogene Interval_67620 chr16 53101501 53101775 + 0 NA Intergenic Intergenic -154709 ENSMUSG00000077718.1 ENSMUSG00000077718 ENSMUST00000104530 Gm25723 snoRNA Interval_54815 chr14 75400536 75400824 + 0 NA promoter-TSS (ENSMUSG00000115615.1) lincRNA-promoter-TSS (ENSMUSG00000115615.1) -234 ENSMUSG00000115615.1 ENSMUSG00000115615 ENSMUST00000227736 Gm49200 lincRNA Interval_156615 chr8 54723983 54724844 + 0 NA promoter-TSS (ENSMUSG00000039375.16) protein_coding-promoter-TSS (ENSMUSG00000039375.16) 15378 ENSMUSG00000089719.1 ENSMUSG00000089719 ENSMUST00000162822 Gm15758 processed_transcript Interval_174430 chrX 152232661 152233949 + 0 NA promoter-TSS (ENSMUSG00000025332.14) protein_coding-promoter-TSS (ENSMUSG00000025332.14) -36501 ENSMUSG00000025332.14 ENSMUSG00000025332 ENSMUST00000155793 Kdm5c protein_coding Interval_86168 chr19 37517227 37518191 + 0 NA Intergenic Intergenic -3170 ENSMUSG00000053799.8 ENSMUSG00000053799 ENSMUST00000238817 Exoc6 protein_coding Interval_13662 chr10 20649088 20650333 + 0 NA intron (ENSMUSG00000019990.15, intron 1 of 2) protein_coding-intron (ENSMUSG00000019990.15, intron 1 of 12) 24075 ENSMUSG00000091730.1 ENSMUSG00000091730 ENSMUST00000171194 Gm17230 processed_pseudogene Interval_131947 chr5 140992444 140992838 + 0 NA intron (ENSMUSG00000036526.8, intron 1 of 2) protein_coding-intron (ENSMUSG00000036526.8, intron 1 of 24) 7830 ENSMUSG00000036526.8 ENSMUSG00000036526 ENSMUST00000199091 Card11 protein_coding Interval_79078 chr18 24381033 24381466 + 0 NA Intergenic Intergenic 41883 ENSMUSG00000117570.1 ENSMUSG00000117570 ENSMUST00000234938 Gm38410 lincRNA Interval_79398 chr18 31654643 31654971 + 0 NA intron (ENSMUSG00000024260.14, intron 7 of 17) protein_coding-intron (ENSMUSG00000024260.14, intron 7 of 20) 20436 ENSMUSG00000024260.14 ENSMUSG00000024260 ENSMUST00000234772 Sap130 protein_coding Interval_104946 chr3 79205250 79205511 + 0 NA intron (ENSMUSG00000062232.14, intron 3 of 29) protein_coding-intron (ENSMUSG00000062232.14, intron 3 of 29) -7539 ENSMUSG00000104585.1 ENSMUSG00000104585 ENSMUST00000200412 4921511C10Rik antisense Interval_136186 chr6 51857740 51858339 + 0 NA exon (ENSMUSG00000059182.7, exon 13 of 13) protein_coding-exon (ENSMUSG00000059182.7, exon 13 of 13) 13890 ENSMUSG00000059182.7 ENSMUSG00000059182 ENSMUST00000203313 Skap2 protein_coding Interval_25270 chr11 46020097 46021094 + 0 NA Intergenic Intergenic -15845 ENSMUSG00000082870.1 ENSMUSG00000082870 ENSMUST00000117047 Gm12165 processed_pseudogene Interval_133472 chr6 5436168 5436400 + 0 NA Intergenic Intergenic 45857 ENSMUSG00000042607.15 ENSMUSG00000042607 ENSMUST00000183358 Asb4 protein_coding Interval_170355 chr9 107366484 107367312 + 0 NA Intergenic Intergenic -12912 ENSMUSG00000102144.1 ENSMUSG00000102144 ENSMUST00000194547 4930429P21Rik lincRNA Interval_99935 chr2 165999974 166002004 + 0 NA intron (ENSMUSG00000027678.17, intron 1 of 22) protein_coding-intron (ENSMUSG00000027678.17, intron 1 of 22) -8472 ENSMUSG00000087351.1 ENSMUSG00000087351 ENSMUST00000146963 Gm11464 lincRNA Interval_107948 chr3 117119616 117121080 + 0 NA Intergenic Intergenic -18834 ENSMUSG00000106343.1 ENSMUSG00000106343 ENSMUST00000197534 Gm18430 processed_pseudogene Interval_91626 chr2 44935502 44936509 + 0 NA Intergenic Intergenic -73730 ENSMUSG00000036890.13 ENSMUSG00000036890 ENSMUST00000133442 Gtdc1 protein_coding Interval_11608 chr1 183261962 183262170 + 0 NA Intergenic Intergenic 7508 ENSMUSG00000118599.1 ENSMUSG00000118599 ENSMUST00000239174 AC122792.1 unitary_pseudogene Interval_117626 chr4 125124513 125125934 + 0 NA intron (ENSMUSG00000042677.7, intron 2 of 5) protein_coding-intron (ENSMUSG00000042677.7, intron 2 of 5) -2703 ENSMUSG00000042677.7 ENSMUSG00000042677 ENSMUST00000131685 Zc3h12a protein_coding Interval_145793 chr7 38370378 38370665 + 0 NA Intergenic Intergenic -2649 ENSMUSG00000100374.1 ENSMUSG00000100374 ENSMUST00000186000 Gm4451 unprocessed_pseudogene Interval_160441 chr8 109523884 109524126 + 0 NA intron (ENSMUSG00000031727.8, intron 6 of 19) protein_coding-intron (ENSMUSG00000031727.8, intron 7 of 20) 28119 ENSMUSG00000037993.8 ENSMUSG00000037993 ENSMUST00000212667 Dhx38 protein_coding Interval_38301 chr12 76989685 76989955 + 0 NA intron (ENSMUSG00000112857.1, intron 2 of 3) lincRNA-intron (ENSMUSG00000112857.1, intron 2 of 3) 17360 ENSMUSG00000112857.1 ENSMUSG00000112857 ENSMUST00000219581 Gm35041 lincRNA Interval_37399 chr12 66748063 66748456 + 0 NA intron (ENSMUSG00000034912.18, intron 3 of 15) protein_coding-intron (ENSMUSG00000034912.18, intron 3 of 16) -92916 ENSMUSG00000034912.18 ENSMUSG00000034912 ENSMUST00000179025 Mdga2 protein_coding Interval_99913 chr2 165779036 165779297 + 0 NA Intergenic Intergenic -78518 ENSMUSG00000085274.1 ENSMUSG00000085274 ENSMUST00000155786 BC046401 processed_transcript Interval_125825 chr5 74738205 74739209 + 0 NA Intergenic Intergenic -4256 ENSMUSG00000085497.2 ENSMUSG00000085497 ENSMUST00000137731 Gm15985 lincRNA Interval_78168 chr18 9680040 9680799 + 0 NA Intergenic Intergenic -27176 ENSMUSG00000036103.9 ENSMUSG00000036103 ENSMUST00000234026 Colec12 protein_coding Interval_25063 chr11 43593980 43596265 + 0 NA TTS (ENSMUSG00000020405.4) protein_coding-TTS (ENSMUSG00000020405.4) 6418 ENSMUSG00000020405.4 ENSMUSG00000020405 ENSMUST00000020672 Fabp6 protein_coding Interval_60795 chr15 76829540 76829762 + 0 NA Intergenic Intergenic -11481 ENSMUSG00000033697.16 ENSMUSG00000033697 ENSMUST00000176736 Arhgap39 protein_coding Interval_63086 chr15 99008816 99009350 + 0 NA Intergenic Intergenic 3026 ENSMUSG00000064081.4 ENSMUSG00000064081 ENSMUST00000079818 Gm8973 processed_pseudogene Interval_70106 chr17 5365893 5366325 + 0 NA Intergenic Intergenic -22654 ENSMUSG00000101133.1 ENSMUSG00000101133 ENSMUST00000190732 Gm29050 antisense Interval_82478 chr18 74338051 74338766 + 0 NA intron (ENSMUSG00000035394.11, intron 8 of 8) protein_coding-intron (ENSMUSG00000035394.11, intron 7 of 7) -10578 ENSMUSG00000035394.11 ENSMUSG00000035394 ENSMUST00000177407 Cfap53 protein_coding Interval_141744 chr6 134166913 134168813 + 0 NA intron (ENSMUSG00000030199.16, intron 2 of 4) protein_coding-intron (ENSMUSG00000030199.16, intron 2 of 7) 4144 ENSMUSG00000091438.1 ENSMUSG00000091438 ENSMUST00000164616 Gm17088 antisense Interval_70665 chr17 12902040 12902238 + 0 NA intron (ENSMUSG00000073460.5, intron 7 of 7) protein_coding-intron (ENSMUSG00000073460.5, intron 7 of 18) 4602 ENSMUSG00000117072.1 ENSMUSG00000117072 ENSMUST00000233153 Gm49926 antisense Interval_110293 chr3 156082457 156082753 + 0 NA Intergenic Intergenic 21714 ENSMUSG00000105949.1 ENSMUSG00000105949 ENSMUST00000195916 Gm6510 processed_pseudogene Interval_156121 chr8 44951112 44952149 + 0 NA exon (ENSMUSG00000070047.14, exon 1 of 26) protein_coding-exon (ENSMUSG00000070047.14, exon 1 of 26) 1416 ENSMUSG00000070047.14 ENSMUSG00000070047 ENSMUST00000189367 Fat1 protein_coding Interval_152122 chr7 129653526 129654152 + 0 NA Intergenic Intergenic -5089 ENSMUSG00000108580.1 ENSMUSG00000108580 ENSMUST00000205844 Gm39094 lincRNA Interval_89979 chr2 27017901 27018352 + 0 NA TTS (ENSMUSG00000015488.14) protein_coding-TTS (ENSMUSG00000015488.14) 2543 ENSMUSG00000015488.14 ENSMUSG00000015488 ENSMUST00000145290 Cacfd1 protein_coding Interval_53068 chr14 54204079 54204417 + 0 NA promoter-TSS (ENSMUSG00000076914.1) TR_J_gene-promoter-TSS (ENSMUSG00000076914.1) -174 ENSMUSG00000076914.1 ENSMUSG00000076914 ENSMUST00000103726 Traj15 TR_J_gene Interval_40857 chr12 108902944 108904137 + 0 NA intron (ENSMUSG00000040877.16, intron 2 of 6) protein_coding-intron (ENSMUSG00000040877.16, intron 3 of 7) -9192 ENSMUSG00000040877.16 ENSMUSG00000040877 ENSMUST00000221510 Wdr25 protein_coding Interval_12484 chr1 194106757 194107603 + 0 NA Intergenic Intergenic 115579 ENSMUSG00000103692.1 ENSMUSG00000103692 ENSMUST00000193395 4930503O07Rik lincRNA Interval_52644 chr14 48200772 48201420 + 0 NA intron (ENSMUSG00000021846.9, intron 2 of 2) protein_coding-intron (ENSMUSG00000021846.9, intron 2 of 5) 4336 ENSMUSG00000115555.1 ENSMUSG00000115555 ENSMUST00000227419 Gm49307 TEC Interval_142201 chr6 138288264 138288758 + 0 NA Intergenic Intergenic -134689 ENSMUSG00000089957.2 ENSMUSG00000089957 ENSMUST00000162868 A830011K09Rik antisense Interval_78782 chr18 20601384 20602048 + 0 NA exon (ENSMUSG00000044393.15, exon 15 of 15) protein_coding-exon (ENSMUSG00000044393.15, exon 15 of 15) 43470 ENSMUSG00000044393.15 ENSMUSG00000044393 ENSMUST00000121837 Dsg2 protein_coding Interval_12967 chr10 8813229 8813468 + 0 NA TTS (ENSMUSG00000015305.6) protein_coding-TTS (ENSMUSG00000015305.6) 10799 ENSMUSG00000065692.1 ENSMUSG00000065692 ENSMUST00000083758 Gm25410 snoRNA Interval_130015 chr5 123710548 123711035 + 0 NA TTS (ENSMUSG00000029427.11) protein_coding-TTS (ENSMUSG00000029427.11) 9983 ENSMUSG00000029427.11 ENSMUSG00000029427 ENSMUST00000200503 Zcchc8 protein_coding Interval_53644 chr14 60530056 60531051 + 0 NA intron (ENSMUSG00000101797.1, intron 2 of 2) lincRNA-intron (ENSMUSG00000101797.1, intron 2 of 2) 45345 ENSMUSG00000101797.1 ENSMUSG00000101797 ENSMUST00000190392 Gm29266 lincRNA Interval_13709 chr10 21318050 21318448 + 0 NA TTS (ENSMUSG00000112654.1) antisense-TTS (ENSMUSG00000112654.1) 23808 ENSMUSG00000112654.1 ENSMUSG00000112654 ENSMUST00000218108 4930455C13Rik antisense Interval_28584 chr11 76974943 76975319 + 0 NA TTS (ENSMUSG00000088913.1) snRNA-TTS (ENSMUSG00000088913.1) 1045 ENSMUSG00000088913.1 ENSMUSG00000088913 ENSMUST00000158288 Gm22611 snRNA Interval_97085 chr2 131134427 131135950 + 0 NA TTS (ENSMUSG00000079039.1) protein_coding-TTS (ENSMUSG00000079039.1) 1691 ENSMUSG00000079039.1 ENSMUSG00000079039 ENSMUST00000110225 Gm11037 protein_coding Interval_1829 chr1 34051142 34051443 + 0 NA intron (ENSMUSG00000026131.20, intron 1 of 97) protein_coding-intron (ENSMUSG00000026131.20, intron 1 of 97) 19192 ENSMUSG00000103364.1 ENSMUSG00000103364 ENSMUST00000194178 Gm38157 TEC Interval_106089 chr3 92903061 92904243 + 0 NA Intergenic Intergenic 22578 ENSMUSG00000054325.5 ENSMUSG00000054325 ENSMUST00000067318 Lce3a protein_coding Interval_17794 chr10 80129725 80132325 + 0 NA TTS (ENSMUSG00000003068.17) protein_coding-TTS (ENSMUSG00000003068.17) 4343 ENSMUSG00000003068.17 ENSMUSG00000003068 ENSMUST00000152592 Stk11 protein_coding Interval_15658 chr10 53207368 53207561 + 0 NA intron (ENSMUSG00000112376.1, intron 2 of 2) lincRNA-intron (ENSMUSG00000112376.1, intron 2 of 2) -3149 ENSMUSG00000112853.1 ENSMUSG00000112853 ENSMUST00000218912 Gm47637 TEC Interval_41671 chr12 117612112 117613055 + 0 NA intron (ENSMUSG00000041992.9, intron 6 of 8) protein_coding-intron (ENSMUSG00000041992.9, intron 8 of 27) 10544 ENSMUSG00000113575.1 ENSMUSG00000113575 ENSMUST00000223270 A930023M06Rik sense_intronic Interval_46751 chr13 69932279 69932935 + 0 NA Intergenic Intergenic -27226 ENSMUSG00000113802.1 ENSMUSG00000113802 ENSMUST00000220972 4933416O17Rik lincRNA Interval_51480 chr14 28053255 28053556 + 0 NA intron (ENSMUSG00000040640.11, intron 11 of 15) protein_coding-intron (ENSMUSG00000040640.11, intron 11 of 15) -177188 ENSMUSG00000109849.1 ENSMUSG00000109849 ENSMUST00000211470 Gm45645 antisense Interval_133543 chr6 6289597 6290644 + 0 NA intron (ENSMUSG00000093482.8, intron 1 of 4) lincRNA-intron (ENSMUSG00000093482.8, intron 1 of 3) 39874 ENSMUSG00000097669.1 ENSMUSG00000097669 ENSMUST00000181799 Gm8649 processed_pseudogene Interval_68194 chr16 67562760 67563098 + 0 NA intron (ENSMUSG00000064115.13, intron 1 of 9) protein_coding-intron (ENSMUSG00000064115.13, intron 1 of 9) 30297 ENSMUSG00000082823.3 ENSMUSG00000082823 ENSMUST00000119911 Gm15828 processed_pseudogene Interval_61364 chr15 81103649 81103900 + 0 NA intron (ENSMUSG00000042292.18, intron 2 of 13) protein_coding-intron (ENSMUSG00000042292.18, intron 1 of 12) 12071 ENSMUSG00000116321.1 ENSMUSG00000116321 ENSMUST00000230595 Gm49522 TEC Interval_151335 chr7 121159828 121160854 + 0 NA exon (ENSMUSG00000034990.15, exon 28 of 29) protein_coding-exon (ENSMUSG00000034990.15, exon 28 of 29) 63653 ENSMUSG00000108502.1 ENSMUSG00000108502 ENSMUST00000206527 Gm9240 processed_pseudogene Interval_44067 chr13 40698213 40698464 + 0 NA Intergenic Intergenic -5667 ENSMUSG00000055732.1 ENSMUSG00000055732 ENSMUST00000069457 Gm9979 lincRNA Interval_77510 chr17 90510933 90511514 + 0 NA intron (ENSMUSG00000024109.18, intron 3 of 3) protein_coding-intron (ENSMUSG00000024109.18, intron 15 of 20) -54650 ENSMUSG00000024109.18 ENSMUSG00000024109 ENSMUST00000162002 Nrxn1 protein_coding Interval_34229 chr11 121451375 121452618 + 0 NA promoter-TSS (ENSMUSG00000039230.14) protein_coding-promoter-TSS (ENSMUSG00000039230.14) 17028 ENSMUSG00000025175.12 ENSMUSG00000025175 ENSMUST00000103014 Fn3k protein_coding Interval_25223 chr11 45550681 45551103 + 0 NA Intergenic Intergenic -88491 ENSMUSG00000077320.1 ENSMUSG00000077320 ENSMUST00000104132 Gm22284 snoRNA Interval_12240 chr1 191065048 191065540 + 0 NA intron (ENSMUSG00000062510.12, intron 2 of 4) protein_coding-intron (ENSMUSG00000062510.12, intron 2 of 4) 2270 ENSMUSG00000062510.12 ENSMUSG00000062510 ENSMUST00000078259 Nsl1 protein_coding Interval_109908 chr3 150846918 150847188 + 0 NA Intergenic Intergenic 176809 ENSMUSG00000092830.1 ENSMUSG00000092830 ENSMUST00000175089 Mir3963 miRNA Interval_6127 chr1 97736741 97737665 + 0 NA intron (ENSMUSG00000040648.14, intron 16 of 26) protein_coding-intron (ENSMUSG00000040648.14, intron 17 of 27) -20657 ENSMUSG00000040648.14 ENSMUSG00000040648 ENSMUST00000152788 Ppip5k2 protein_coding Interval_64567 chr16 13367187 13367666 + 0 NA intron (ENSMUSG00000087526.2, intron 4 of 7) protein_coding-intron (ENSMUSG00000009569.14, intron 3 of 16) 9005 ENSMUSG00000009569.14 ENSMUSG00000009569 ENSMUST00000149359 Mrtfb protein_coding Interval_12375 chr1 192745126 192746466 + 0 NA TTS (ENSMUSG00000094131.1) snRNA-TTS (ENSMUSG00000094131.1) 225 ENSMUSG00000094131.1 ENSMUSG00000094131 ENSMUST00000082947 Gm22265 snRNA Interval_12922 chr10 8177293 8178431 + 0 NA intron (ENSMUSG00000112109.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000112109.1, intron 1 of 2) 1731 ENSMUSG00000112109.1 ENSMUSG00000112109 ENSMUST00000219578 Gm30906 lincRNA Interval_113848 chr4 59340389 59341486 + 0 NA intron (ENSMUSG00000038578.15, intron 3 of 3) protein_coding-intron (ENSMUSG00000038578.15, intron 12 of 16) -24971 ENSMUSG00000038578.15 ENSMUSG00000038578 ENSMUST00000136077 Susd1 protein_coding Interval_142203 chr6 138422015 138423618 + 0 NA promoter-TSS (ENSMUSG00000089957.2) antisense-promoter-TSS (ENSMUSG00000089957.2) -384 ENSMUSG00000089957.2 ENSMUSG00000089957 ENSMUST00000162868 A830011K09Rik antisense Interval_156273 chr8 46769438 46770015 + 0 NA TTS (ENSMUSG00000110374.1) antisense-TTS (ENSMUSG00000110374.1) 1259 ENSMUSG00000110374.1 ENSMUSG00000110374 ENSMUST00000210068 Gm31172 antisense Interval_9315 chr1 156111011 156112276 + 0 NA intron (ENSMUSG00000015484.3, intron 1 of 4) protein_coding-intron (ENSMUSG00000015484.3, intron 1 of 4) 75871 ENSMUSG00000050565.16 ENSMUSG00000050565 ENSMUST00000125371 Tor1aip2 protein_coding Interval_31868 chr11 103463468 103464885 + 0 NA intron (ENSMUSG00000078632.4, intron 7 of 13) protein_coding-intron (ENSMUSG00000078632.4, intron 7 of 13) 40421 ENSMUSG00000078632.4 ENSMUSG00000078632 ENSMUST00000153273 Lrrc37a protein_coding Interval_123199 chr5 30581122 30581652 + 0 NA intron (ENSMUSG00000053214.7, intron 2 of 3) processed_transcript-intron (ENSMUSG00000053214.7, intron 2 of 3) -1532 ENSMUSG00000053214.7 ENSMUSG00000053214 ENSMUST00000200563 Gm9899 processed_transcript Interval_172517 chrX 23534870 23535687 + 0 NA Intergenic Intergenic -135799 ENSMUSG00000082155.1 ENSMUSG00000082155 ENSMUST00000117503 Gm7164 processed_pseudogene Interval_22419 chr11 9892769 9893137 + 0 NA Intergenic Intergenic -155332 ENSMUSG00000081629.1 ENSMUSG00000081629 ENSMUST00000117907 Eif3s6-ps1 processed_pseudogene Interval_144606 chr7 27010181 27012164 + 0 NA Intergenic Intergenic -17909 ENSMUSG00000060407.6 ENSMUSG00000060407 ENSMUST00000075552 Cyp2a12 protein_coding Interval_44286 chr13 43344274 43344586 + 0 NA Intergenic Intergenic -21076 ENSMUSG00000054021.6 ENSMUSG00000054021 ENSMUST00000222106 Sirt5 protein_coding Interval_102699 chr3 30354090 30355142 + 0 NA intron (ENSMUSG00000027684.16, intron 2 of 8) protein_coding-intron (ENSMUSG00000027684.16, intron 1 of 11) -80231 ENSMUSG00000103870.1 ENSMUSG00000103870 ENSMUST00000192999 Gm38362 TEC Interval_11258 chr1 180532445 180533486 + 0 NA Intergenic Intergenic -13238 ENSMUSG00000102608.1 ENSMUSG00000102608 ENSMUST00000194222 Gm37267 lincRNA Interval_37144 chr12 58947442 58947686 + 0 NA Intergenic Intergenic -5525 ENSMUSG00000097443.2 ENSMUSG00000097443 ENSMUST00000180738 Gm17529 antisense Interval_8235 chr1 136646191 136646705 + 0 NA Intergenic Intergenic 21547 ENSMUSG00000041483.14 ENSMUSG00000041483 ENSMUST00000112046 Zfp281 protein_coding Interval_144207 chr7 19952739 19953595 + 0 NA promoter-TSS (ENSMUSG00000070778.5) processed_pseudogene-promoter-TSS (ENSMUSG00000070778.5) -616 ENSMUSG00000070778.5 ENSMUSG00000070778 ENSMUST00000094754 Rpl7a-ps8 processed_pseudogene Interval_18377 chr10 85402324 85402812 + 0 NA intron (ENSMUSG00000020042.15, intron 1 of 16) protein_coding-intron (ENSMUSG00000020042.15, intron 1 of 9) 68667 ENSMUSG00000087895.1 ENSMUSG00000087895 ENSMUST00000157270 Gm25281 miRNA Interval_50723 chr14 18574291 18574470 + 0 NA TTS (ENSMUSG00000058317.12) protein_coding-TTS (ENSMUSG00000058317.12) -29248 ENSMUSG00000114529.1 ENSMUSG00000114529 ENSMUST00000224515 Gm4939 processed_pseudogene Interval_151051 chr7 118190969 118192503 + 0 NA exon (ENSMUSG00000030655.15, exon 1 of 1) protein_coding-exon (ENSMUSG00000030655.15, exon 1 of 1) 555 ENSMUSG00000030655.15 ENSMUSG00000030655 ENSMUST00000179847 Smg1 protein_coding Interval_32474 chr11 107734655 107735167 + 0 NA TTS (ENSMUSG00000020723.3) protein_coding-TTS (ENSMUSG00000020723.3) 7168 ENSMUSG00000020723.3 ENSMUSG00000020723 ENSMUST00000134076 Cacng4 protein_coding Interval_73433 chr17 37221562 37222299 + 0 NA intron (ENSMUSG00000064121.4, intron 1 of 1) protein_coding-intron (ENSMUSG00000064121.4, intron 1 of 1) 1784 ENSMUSG00000064121.4 ENSMUSG00000064121 ENSMUST00000078209 Olfr96 protein_coding Interval_52320 chr14 44850440 44851059 + 0 NA TTS (ENSMUSG00000071489.1) protein_coding-TTS (ENSMUSG00000071489.1) 4699 ENSMUSG00000115521.1 ENSMUSG00000115521 ENSMUST00000227561 Gm34198 processed_pseudogene Interval_38684 chr12 81013350 81013980 + 0 NA Intergenic Intergenic -13163 ENSMUSG00000021136.13 ENSMUSG00000021136 ENSMUST00000129362 Smoc1 protein_coding Interval_52566 chr14 47553434 47554422 + 0 NA intron (ENSMUSG00000037526.7, intron 5 of 10) protein_coding-intron (ENSMUSG00000037526.7, intron 4 of 9) 11948 ENSMUSG00000115823.1 ENSMUSG00000115823 ENSMUST00000228568 Gm49004 antisense Interval_160759 chr8 111981749 111982757 + 0 NA exon (ENSMUSG00000031949.17, exon 6 of 10) protein_coding-exon (ENSMUSG00000031949.17, exon 6 of 10) 10049 ENSMUSG00000031949.17 ENSMUSG00000031949 ENSMUST00000120457 Adat1 protein_coding Interval_77312 chr17 87973126 87975825 + 0 NA promoter-TSS (ENSMUSG00000005370.4) protein_coding-promoter-TSS (ENSMUSG00000005370.4) -620 ENSMUSG00000005370.4 ENSMUSG00000005370 ENSMUST00000234756 Msh6 protein_coding Interval_132536 chr5 145957699 145958182 + 0 NA intron (ENSMUSG00000104805.1, intron 1 of 1) unprocessed_pseudogene-intron (ENSMUSG00000104805.1, intron 1 of 1) 1888 ENSMUSG00000104805.1 ENSMUSG00000104805 ENSMUST00000197368 Gm43624 unprocessed_pseudogene Interval_54011 chr14 64440004 64441149 + 0 NA intron (ENSMUSG00000054733.9, intron 1 of 2) protein_coding-intron (ENSMUSG00000054733.9, intron 6 of 10) -23628 ENSMUSG00000054733.9 ENSMUSG00000054733 ENSMUST00000209513 Msra protein_coding Interval_47120 chr13 75929731 75932150 + 0 NA promoter-TSS (ENSMUSG00000081816.1) processed_pseudogene-promoter-TSS (ENSMUSG00000081816.1) -612 ENSMUSG00000081816.1 ENSMUSG00000081816 ENSMUST00000117821 Gm15528 processed_pseudogene Interval_73608 chr17 41113869 41114589 + 0 NA intron (ENSMUSG00000117210.1, intron 1 of 3) lincRNA-intron (ENSMUSG00000117210.1, intron 1 of 3) 13191 ENSMUSG00000117062.1 ENSMUSG00000117062 ENSMUST00000232966 Ldha-ps3 processed_pseudogene Interval_38456 chr12 79166049 79166346 + 0 NA intron (ENSMUSG00000021124.13, intron 1 of 4) protein_coding-intron (ENSMUSG00000021124.13, intron 2 of 5) 171 ENSMUSG00000021124.13 ENSMUSG00000021124 ENSMUST00000163031 Vti1b protein_coding Interval_71180 chr17 20956577 20957696 + 0 NA intron (ENSMUSG00000007564.15, intron 2 of 4) protein_coding-intron (ENSMUSG00000007564.15, intron 6 of 14) -8158 ENSMUSG00000007564.15 ENSMUSG00000007564 ENSMUST00000231928 Ppp2r1a protein_coding Interval_65553 chr16 23270217 23271438 + 0 NA intron (ENSMUSG00000022885.16, intron 1 of 2) protein_coding-intron (ENSMUSG00000022885.16, intron 2 of 7) 44806 ENSMUSG00000022885.16 ENSMUSG00000022885 ENSMUST00000115335 St6gal1 protein_coding Interval_142127 chr6 137459568 137459948 + 0 NA intron (ENSMUSG00000030223.14, intron 13 of 14) protein_coding-intron (ENSMUSG00000030223.14, intron 25 of 26) 28453 ENSMUSG00000107759.1 ENSMUSG00000107759 ENSMUST00000204925 Gm44258 sense_intronic Interval_109526 chr3 143994621 143995349 + 0 NA Intergenic Intergenic -40211 ENSMUSG00000105811.1 ENSMUSG00000105811 ENSMUST00000196620 Gm42707 lincRNA Interval_1819 chr1 33998486 33999274 + 0 NA intron (ENSMUSG00000026131.20, intron 3 of 102) protein_coding-intron (ENSMUSG00000026131.20, intron 3 of 102) -17378 ENSMUSG00000084506.1 ENSMUSG00000084506 ENSMUST00000122557 Gm23792 snRNA Interval_110007 chr3 152434725 152434969 + 0 NA intron (ENSMUSG00000039068.16, intron 4 of 13) protein_coding-intron (ENSMUSG00000039068.16, intron 4 of 13) 38715 ENSMUSG00000039068.16 ENSMUSG00000039068 ENSMUST00000135044 Zzz3 protein_coding Interval_110707 chr4 6681062 6681283 + 0 NA Intergenic Intergenic -6997 ENSMUSG00000086052.1 ENSMUSG00000086052 ENSMUST00000137749 Gm11802 antisense Interval_154666 chr8 22458379 22458586 + 0 NA Intergenic Intergenic 18373 ENSMUSG00000031534.15 ENSMUSG00000031534 ENSMUST00000033935 Smim19 protein_coding Interval_169289 chr9 96173609 96174205 + 0 NA TTS (ENSMUSG00000041440.18) protein_coding-TTS (ENSMUSG00000041440.18) 2991 ENSMUSG00000041440.18 ENSMUSG00000041440 ENSMUST00000189249 Gk5 protein_coding Interval_128615 chr5 114314726 114315525 + 0 NA intron (ENSMUSG00000066952.11, intron 1 of 30) protein_coding-intron (ENSMUSG00000066952.11, intron 1 of 28) 184 ENSMUSG00000066952.11 ENSMUSG00000066952 ENSMUST00000125230 Myo1h protein_coding Interval_57981 chr15 25841788 25844022 + 0 NA promoter-TSS (ENSMUSG00000022270.16) protein_coding-promoter-TSS (ENSMUSG00000022270.16) -2294 ENSMUSG00000115593.1 ENSMUSG00000115593 ENSMUST00000228649 Gm4824 processed_pseudogene Interval_83093 chr18 81210651 81210966 + 0 NA Intergenic Intergenic 25258 ENSMUSG00000097181.1 ENSMUSG00000097181 ENSMUST00000181204 4930594M17Rik lincRNA Interval_18995 chr10 93632095 93632535 + 0 NA intron (ENSMUSG00000111366.1, intron 2 of 2) lincRNA-intron (ENSMUSG00000111366.1, intron 2 of 2) -8366 ENSMUSG00000020019.4 ENSMUSG00000020019 ENSMUST00000020204 Ntn4 protein_coding Interval_22253 chr11 8234399 8234677 + 0 NA Intergenic Intergenic -120444 ENSMUSG00000082459.1 ENSMUSG00000082459 ENSMUST00000122321 Gm11988 processed_pseudogene Interval_128690 chr5 114727785 114729385 + 0 NA TTS (ENSMUSG00000041890.17) protein_coding-TTS (ENSMUSG00000041890.17) 8901 ENSMUSG00000002486.15 ENSMUSG00000002486 ENSMUST00000202252 Tchp protein_coding Interval_157504 chr8 70941361 70941855 + 0 NA Intergenic Intergenic 10203 ENSMUSG00000074252.2 ENSMUSG00000074252 ENSMUST00000098653 Gm10654 TEC Interval_53716 chr14 61127027 61128221 + 0 NA Intergenic Intergenic 64197 ENSMUSG00000115627.1 ENSMUSG00000115627 ENSMUST00000227839 Gm41168 lincRNA Interval_160283 chr8 107681646 107682574 + 0 NA Intergenic Intergenic 8734 ENSMUSG00000110508.1 ENSMUSG00000110508 ENSMUST00000212585 Gm8940 processed_pseudogene Interval_31457 chr11 100796569 100797097 + 0 NA intron (ENSMUSG00000020919.11, intron 9 of 18) protein_coding-intron (ENSMUSG00000020919.11, intron 9 of 18) -22033 ENSMUSG00000089049.1 ENSMUSG00000089049 ENSMUST00000158424 Gm24358 misc_RNA Interval_96179 chr2 120320811 120321135 + 0 NA TTS (ENSMUSG00000027291.15) protein_coding-TTS (ENSMUSG00000027291.15) -8596 ENSMUSG00000046971.7 ENSMUSG00000046971 ENSMUST00000054651 Pla2g4f protein_coding Interval_64666 chr16 14003070 14004691 + 0 NA intron (ENSMUSG00000044117.12, intron 1 of 3) protein_coding-intron (ENSMUSG00000044117.12, intron 1 of 5) 7836 ENSMUSG00000082554.1 ENSMUSG00000082554 ENSMUST00000120696 Gm15806 processed_pseudogene Interval_14890 chr10 40882854 40884745 + 0 NA promoter-TSS (ENSMUSG00000038446.8) protein_coding-promoter-TSS (ENSMUSG00000038446.8) -28 ENSMUSG00000019831.14 ENSMUSG00000019831 ENSMUST00000105509 Wasf1 protein_coding Interval_154530 chr8 19016748 19017026 + 0 NA Intergenic Intergenic 9679 ENSMUSG00000053790.3 ENSMUSG00000053790 ENSMUST00000066416 Defb38 protein_coding Interval_16247 chr10 61702460 61702824 + 0 NA TTS (ENSMUSG00000020087.5) protein_coding-TTS (ENSMUSG00000020087.5) 5995 ENSMUSG00000020087.5 ENSMUSG00000020087 ENSMUST00000218280 Tysnd1 protein_coding Interval_50756 chr14 19175035 19175553 + 0 NA Intergenic Intergenic 15599 ENSMUSG00000091557.2 ENSMUSG00000091557 ENSMUST00000171982 Gm8584 unprocessed_pseudogene Interval_145736 chr7 37944079 37944301 + 0 NA Intergenic Intergenic 79361 ENSMUSG00000030421.9 ENSMUSG00000030421 ENSMUST00000206169 Uri1 protein_coding Interval_132718 chr5 147356352 147357796 + 0 NA intron (ENSMUSG00000042817.15, intron 10 of 23) protein_coding-intron (ENSMUSG00000042817.15, intron 10 of 23) -30740 ENSMUSG00000106939.1 ENSMUSG00000106939 ENSMUST00000201667 Gm29778 processed_pseudogene Interval_27418 chr11 67510733 67511073 + 0 NA intron (ENSMUSG00000033066.16, intron 1 of 6) protein_coding-intron (ENSMUSG00000033066.16, intron 1 of 13) 66563 ENSMUSG00000087058.1 ENSMUSG00000087058 ENSMUST00000152963 Gm12301 antisense Interval_69780 chr16 96248002 96248264 + 0 NA intron (ENSMUSG00000074892.9, intron 2 of 3) protein_coding-intron (ENSMUSG00000074892.9, intron 2 of 3) -25341 ENSMUSG00000074892.9 ENSMUSG00000074892 ENSMUST00000099497 B3galt5 protein_coding Interval_158264 chr8 80697846 80698103 + 0 NA TTS (ENSMUSG00000031715.14) protein_coding-TTS (ENSMUSG00000031715.14) 12887 ENSMUSG00000031715.14 ENSMUSG00000031715 ENSMUST00000148455 Smarca5 protein_coding Interval_99749 chr2 164678816 164679622 + 0 NA Intergenic Intergenic -5888 ENSMUSG00000067704.1 ENSMUSG00000067704 ENSMUST00000088260 Wfdc13 protein_coding Interval_6591 chr1 117823462 117823679 + 0 NA Intergenic Intergenic -6511 ENSMUSG00000100305.1 ENSMUSG00000100305 ENSMUST00000187455 Gm28360 protein_coding Interval_121831 chr5 8622196 8623555 + 0 NA promoter-TSS (ENSMUSG00000040570.14) protein_coding-promoter-TSS (ENSMUSG00000040570.14) 77 ENSMUSG00000040570.14 ENSMUSG00000040570 ENSMUST00000115378 Rundc3b protein_coding Interval_171582 chr9 119351992 119352473 + 0 NA intron (ENSMUSG00000070280.13, intron 1 of 10) protein_coding-intron (ENSMUSG00000070280.13, intron 1 of 10) -5355 ENSMUSG00000035769.9 ENSMUSG00000035769 ENSMUST00000213383 Xylb protein_coding Interval_27534 chr11 68499082 68499476 + 0 NA Intergenic Intergenic -3812 ENSMUSG00000046207.14 ENSMUSG00000046207 ENSMUST00000131669 Pik3r6 protein_coding Interval_4065 chr1 67038345 67039390 + 0 NA promoter-TSS (ENSMUSG00000026000.16) protein_coding-promoter-TSS (ENSMUSG00000026000.16) -16649 ENSMUSG00000026000.16 ENSMUSG00000026000 ENSMUST00000189210 Lancl1 protein_coding Interval_42961 chr13 21927845 21929098 + 0 NA Intergenic Intergenic -3455 ENSMUSG00000105839.1 ENSMUSG00000105839 ENSMUST00000196554 Gm44456 miRNA Interval_21189 chr10 127126532 127127127 + 0 NA Intergenic Intergenic -5714 ENSMUSG00000040462.13 ENSMUSG00000040462 ENSMUST00000218798 Os9 protein_coding Interval_84955 chr19 20043795 20044775 + 0 NA intron (ENSMUSG00000118150.1, intron 1 of 3) lincRNA-intron (ENSMUSG00000118150.1, intron 1 of 3) -10650 ENSMUSG00000064783.1 ENSMUSG00000064783 ENSMUST00000082849 Gm22684 snoRNA Interval_52246 chr14 40986986 40989149 + 0 NA Intergenic Intergenic 16466 ENSMUSG00000021792.15 ENSMUSG00000021792 ENSMUST00000152837 Prxl2a protein_coding Interval_64643 chr16 13844846 13845086 + 0 NA intron (ENSMUSG00000022680.14, intron 15 of 22) protein_coding-intron (ENSMUSG00000022680.14, intron 15 of 23) 25734 ENSMUSG00000099314.1 ENSMUSG00000099314 ENSMUST00000183701 Gm27734 miRNA Interval_157099 chr8 65147925 65148771 + 0 NA Intergenic Intergenic -16034 ENSMUSG00000109935.1 ENSMUSG00000109935 ENSMUST00000210649 Gm7619 processed_pseudogene Interval_11195 chr1 180029013 180030478 + 0 NA intron (ENSMUSG00000026490.18, intron 3 of 17) protein_coding-intron (ENSMUSG00000026490.18, intron 2 of 34) 8683 ENSMUSG00000102194.1 ENSMUSG00000102194 ENSMUST00000191822 Gm38169 TEC Interval_135431 chr6 39334993 39335874 + 0 NA TTS (ENSMUSG00000029924.12) protein_coding-TTS (ENSMUSG00000029924.12) 42224 ENSMUSG00000029924.12 ENSMUSG00000029924 ENSMUST00000202785 Slc37a3 protein_coding Interval_151126 chr7 118712385 118713207 + 0 NA intron (ENSMUSG00000033904.16, intron 1 of 15) protein_coding-intron (ENSMUSG00000033904.16, intron 1 of 15) -7048 ENSMUSG00000033917.15 ENSMUSG00000033917 ENSMUST00000207323 Gde1 protein_coding Interval_124382 chr5 45390874 45391198 + 0 NA intron (ENSMUSG00000029092.9, intron 1 of 5) lincRNA-intron (ENSMUSG00000029092.9, intron 1 of 5) -43353 ENSMUSG00000105255.1 ENSMUSG00000105255 ENSMUST00000196216 Gm42413 antisense Interval_146121 chr7 44123489 44124803 + 0 NA intron (ENSMUSG00000108403.1, intron 3 of 3) unprocessed_pseudogene-intron (ENSMUSG00000108403.1, intron 3 of 3) -4345 ENSMUSG00000108796.1 ENSMUSG00000108796 ENSMUST00000206702 Gm45126 unprocessed_pseudogene Interval_77387 chr17 88368057 88369048 + 0 NA intron (ENSMUSG00000117351.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000117351.1, intron 1 of 1) 20147 ENSMUSG00000117351.1 ENSMUSG00000117351 ENSMUST00000234514 Gm31615 lincRNA Interval_168382 chr9 79865981 79866241 + 0 NA intron (ENSMUSG00000034898.17, intron 2 of 6) protein_coding-intron (ENSMUSG00000034898.17, intron 2 of 5) -27724 ENSMUSG00000092565.1 ENSMUSG00000092565 ENSMUST00000174028 Gm20477 processed_pseudogene Interval_75358 chr17 66103835 66104798 + 0 NA Intergenic Intergenic -2807 ENSMUSG00000024099.15 ENSMUSG00000024099 ENSMUST00000147484 Ndufv2 protein_coding Interval_38507 chr12 79718569 79720608 + 0 NA intron (ENSMUSG00000059060.15, intron 8 of 10) protein_coding-intron (ENSMUSG00000059060.15, intron 8 of 10) 205906 ENSMUSG00000112765.1 ENSMUSG00000112765 ENSMUST00000219857 9430078K24Rik lincRNA Interval_121657 chr5 4569639 4569834 + 0 NA Intergenic Intergenic 188299 ENSMUSG00000044674.6 ENSMUSG00000044674 ENSMUST00000054294 Fzd1 protein_coding Interval_118346 chr4 130790138 130790846 + 0 NA Intergenic Intergenic 4423 ENSMUSG00000086548.1 ENSMUSG00000086548 ENSMUST00000152986 Gm12972 lincRNA Interval_18812 chr10 91082163 91083457 + 0 NA promoter-TSS (ENSMUSG00000019975.12) protein_coding-promoter-TSS (ENSMUSG00000019975.12) -106 ENSMUSG00000019979.12 ENSMUSG00000019979 ENSMUST00000160788 Apaf1 protein_coding Interval_67308 chr16 45814431 45815939 + 0 NA intron (ENSMUSG00000033149.17, intron 3 of 15) protein_coding-intron (ENSMUSG00000033149.17, intron 2 of 17) -42902 ENSMUSG00000033149.17 ENSMUSG00000033149 ENSMUST00000136317 Phldb2 protein_coding Interval_67475 chr16 49500751 49501078 + 0 NA Intergenic Intergenic 76108 ENSMUSG00000097959.2 ENSMUSG00000097959 ENSMUST00000183137 Gm6931 processed_pseudogene Interval_82729 chr18 76240804 76242569 + 0 NA promoter-TSS (ENSMUSG00000024563.16) protein_coding-promoter-TSS (ENSMUSG00000024563.16) -488 ENSMUSG00000024563.16 ENSMUSG00000024563 ENSMUST00000113930 Smad2 protein_coding Interval_141054 chr6 124701290 124703334 + 0 NA promoter-TSS (ENSMUSG00000004270.13) protein_coding-promoter-TSS (ENSMUSG00000004270.13) 55 ENSMUSG00000004270.13 ENSMUSG00000004270 ENSMUST00000150597 Lpcat3 protein_coding Interval_153505 chr7 145281534 145281871 + 0 NA intron (ENSMUSG00000048677.9, intron 1 of 5) protein_coding-intron (ENSMUSG00000048677.9, intron 1 of 24) 2220 ENSMUSG00000048677.9 ENSMUSG00000048677 ENSMUST00000209156 Tpcn2 protein_coding Interval_58479 chr15 34984897 34985668 + 0 NA intron (ENSMUSG00000022329.15, intron 8 of 10) protein_coding-intron (ENSMUSG00000022329.15, intron 8 of 10) -25045 ENSMUSG00000022329.15 ENSMUSG00000022329 ENSMUST00000138841 Stk3 protein_coding Interval_166942 chr9 64055312 64055706 + 0 NA Intergenic Intergenic 7013 ENSMUSG00000088988.1 ENSMUSG00000088988 ENSMUST00000158363 Gm25606 rRNA Interval_45066 chr13 51831938 51832622 + 0 NA Intergenic Intergenic -14464 ENSMUSG00000021453.2 ENSMUSG00000021453 ENSMUST00000132480 Gadd45g protein_coding Interval_122357 chr5 21672947 21673861 + 0 NA intron (ENSMUSG00000044968.16, intron 3 of 4) protein_coding-intron (ENSMUSG00000044968.16, intron 3 of 4) -16137 ENSMUSG00000081242.1 ENSMUSG00000081242 ENSMUST00000120619 Gm15719 processed_pseudogene Interval_62681 chr15 96236065 96236257 + 0 NA intron (ENSMUSG00000097619.8, intron 2 of 2) lincRNA-intron (ENSMUSG00000097536.2, intron 1 of 6) 17826 ENSMUSG00000097619.8 ENSMUSG00000097619 ENSMUST00000229950 4833422M21Rik processed_transcript Interval_136473 chr6 54816188 54817680 + 0 NA promoter-TSS (ENSMUSG00000058446.14) protein_coding-promoter-TSS (ENSMUSG00000058446.14) -336 ENSMUSG00000058446.14 ENSMUSG00000058446 ENSMUST00000127331 Znrf2 protein_coding Interval_94329 chr2 89100258 89100546 + 0 NA intron (ENSMUSG00000101480.3, intron 1 of 1) protein_coding-intron (ENSMUSG00000101480.3, intron 1 of 1) 6433 ENSMUSG00000101480.3 ENSMUSG00000101480 ENSMUST00000099806 Olfr1220 protein_coding Interval_1501 chr1 24248983 24249314 + 0 NA intron (ENSMUSG00000026147.16, intron 31 of 31) protein_coding-intron (ENSMUSG00000026147.16, intron 37 of 37) 19631 ENSMUSG00000026147.16 ENSMUSG00000026147 ENSMUST00000147902 Col9a1 protein_coding Interval_96184 chr2 120352499 120353591 + 0 NA promoter-TSS (ENSMUSG00000027291.15) protein_coding-promoter-TSS (ENSMUSG00000027291.15) 76 ENSMUSG00000027291.15 ENSMUSG00000027291 ENSMUST00000126526 Vps39 protein_coding Interval_149343 chr7 97589965 97592705 + 0 NA TTS (ENSMUSG00000108405.1) processed_pseudogene-TTS (ENSMUSG00000108405.1) 1067 ENSMUSG00000108405.1 ENSMUSG00000108405 ENSMUST00000206623 Ywhaq-ps1 processed_pseudogene Interval_121287 chr4 154729145 154730873 + 0 NA Intergenic Intergenic -62142 ENSMUSG00000051276.4 ENSMUSG00000051276 ENSMUST00000060062 Actrt2 protein_coding Interval_107520 chr3 108278130 108278519 + 0 NA intron (ENSMUSG00000068749.9, intron 3 of 3) protein_coding-intron (ENSMUSG00000068749.9, intron 8 of 8) -5758 ENSMUSG00000068747.14 ENSMUSG00000068747 ENSMUST00000129755 Sort1 protein_coding Interval_9603 chr1 160145230 160147634 + 0 NA intron (ENSMUSG00000026725.17, intron 1 of 17) protein_coding-intron (ENSMUSG00000026725.17, intron 2 of 21) 1456 ENSMUSG00000026725.17 ENSMUSG00000026725 ENSMUST00000131919 Tnn protein_coding Interval_122010 chr5 13879035 13880722 + 0 NA exon (ENSMUSG00000105614.1, exon 1 of 1) processed_pseudogene-exon (ENSMUSG00000105614.1, exon 1 of 1) 659 ENSMUSG00000105614.1 ENSMUSG00000105614 ENSMUST00000196992 Dnd1-ps processed_pseudogene Interval_105710 chr3 88693975 88694497 + 0 NA TTS (ENSMUSG00000105448.1) scaRNA-TTS (ENSMUSG00000105448.1) 305 ENSMUSG00000105288.1 ENSMUSG00000105288 ENSMUST00000198589 Gm25820 scaRNA Interval_82140 chr18 67984448 67984730 + 0 NA intron (ENSMUSG00000024544.9, intron 1 of 5) protein_coding-intron (ENSMUSG00000024544.9, intron 1 of 5) 76961 ENSMUSG00000118326.1 ENSMUSG00000118326 ENSMUST00000235570 Gm8887 processed_pseudogene Interval_101562 chr3 6100888 6101510 + 0 NA Intergenic Intergenic 37045 ENSMUSG00000103848.1 ENSMUSG00000103848 ENSMUST00000192818 Gm17934 processed_pseudogene Interval_25621 chr11 50248680 50250047 + 0 NA intron (ENSMUSG00000097887.2, intron 1 of 2) antisense-intron (ENSMUSG00000097887.2, intron 1 of 2) -10847 ENSMUSG00000020377.15 ENSMUSG00000020377 ENSMUST00000221081 Ltc4s protein_coding Interval_160484 chr8 109892655 109892994 + 0 NA intron (ENSMUSG00000031732.12, intron 2 of 18) protein_coding-intron (ENSMUSG00000031732.12, intron 2 of 18) 24221 ENSMUSG00000031732.12 ENSMUSG00000031732 ENSMUST00000034175 Phlpp2 protein_coding Interval_82937 chr18 79709830 79710070 + 0 NA Intergenic Intergenic -8693 ENSMUSG00000117709.1 ENSMUSG00000117709 ENSMUST00000237884 Gm50178 processed_pseudogene Interval_137116 chr6 67544666 67544959 + 0 NA intron (ENSMUSG00000105650.1, intron 2 of 4) lincRNA-intron (ENSMUSG00000105650.1, intron 2 of 4) -9016 ENSMUSG00000051397.5 ENSMUSG00000051397 ENSMUST00000058178 Tacstd2 protein_coding Interval_37197 chr12 59477434 59477835 + 0 NA Intergenic Intergenic -122025 ENSMUSG00000111978.1 ENSMUSG00000111978 ENSMUST00000219779 Gm48268 processed_pseudogene Interval_3134 chr1 53856681 53856895 + 0 NA intron (ENSMUSG00000042807.15, intron 2 of 5) protein_coding-intron (ENSMUSG00000042807.15, intron 19 of 28) 7364 ENSMUSG00000098443.1 ENSMUSG00000098443 ENSMUST00000184834 Mir7681 miRNA Interval_56554 chr14 120318208 120319236 + 0 NA intron (ENSMUSG00000022139.17, intron 1 of 2) protein_coding-intron (ENSMUSG00000022139.17, intron 1 of 8) -60519 ENSMUSG00000022139.17 ENSMUSG00000022139 ENSMUST00000227153 Mbnl2 protein_coding Interval_101004 chr2 174126399 174127216 + 0 NA promoter-TSS (ENSMUSG00000074555.5) antisense-promoter-TSS (ENSMUSG00000074555.5) -919 ENSMUSG00000074555.5 ENSMUSG00000074555 ENSMUST00000166709 Gm10714 antisense Interval_67598 chr16 52061808 52062981 + 0 NA intron (ENSMUSG00000022637.11, intron 1 of 16) protein_coding-intron (ENSMUSG00000022637.11, intron 3 of 17) 42753 ENSMUSG00000095977.1 ENSMUSG00000095977 ENSMUST00000158181 Gm23513 snoRNA Interval_7093 chr1 125676107 125677652 + 0 NA promoter-TSS (ENSMUSG00000026343.6) protein_coding-promoter-TSS (ENSMUSG00000026343.6) -8263 ENSMUSG00000101015.1 ENSMUSG00000101015 ENSMUST00000191239 Gm18444 processed_pseudogene Interval_17280 chr10 75551116 75551746 + 0 NA exon (ENSMUSG00000046807.10, exon 4 of 4) protein_coding-exon (ENSMUSG00000046807.10, exon 4 of 4) 2463 ENSMUSG00000046807.10 ENSMUSG00000046807 ENSMUST00000051129 Lrrc75b protein_coding Interval_109843 chr3 148882733 148884291 + 0 NA intron (ENSMUSG00000028184.12, intron 3 of 19) protein_coding-intron (ENSMUSG00000028184.12, intron 2 of 22) -105640 ENSMUSG00000104786.1 ENSMUSG00000104786 ENSMUST00000196445 Gm43573 antisense Interval_147959 chr7 75887011 75887410 + 0 NA Intergenic Intergenic 38813 ENSMUSG00000055652.14 ENSMUSG00000055652 ENSMUST00000205887 Klhl25 protein_coding Interval_96136 chr2 119970514 119970982 + 0 NA Intergenic Intergenic -2155 ENSMUSG00000033902.12 ENSMUSG00000033902 ENSMUST00000148161 Mapkbp1 protein_coding Interval_54071 chr14 64994970 64995457 + 0 NA intron (ENSMUSG00000021975.9, intron 6 of 16) protein_coding-intron (ENSMUSG00000021975.9, intron 6 of 16) 45168 ENSMUSG00000021975.9 ENSMUSG00000021975 ENSMUST00000225790 Ints9 protein_coding Interval_85311 chr19 24555320 24557642 + 0 NA promoter-TSS (ENSMUSG00000024867.14) protein_coding-promoter-TSS (ENSMUSG00000024867.14) 129 ENSMUSG00000117979.1 ENSMUSG00000117979 ENSMUST00000235982 Gm50341 lincRNA Interval_164479 chr9 37391036 37392430 + 0 NA Intergenic Intergenic -10313 ENSMUSG00000032125.21 ENSMUSG00000032125 ENSMUST00000215777 Robo4 protein_coding Interval_138900 chr6 93245182 93245398 + 0 NA intron (ENSMUSG00000097462.7, intron 4 of 5) antisense-intron (ENSMUSG00000097462.7, intron 6 of 9) 3570 ENSMUSG00000107655.1 ENSMUSG00000107655 ENSMUST00000203784 Gm44220 TEC Interval_133228 chr5 150706536 150707361 + 0 NA intron (ENSMUSG00000034021.15, intron 1 of 34) protein_coding-intron (ENSMUSG00000034021.15, intron 1 of 34) -1096 ENSMUSG00000084717.1 ENSMUSG00000084717 ENSMUST00000122768 Gm24630 snRNA Interval_104430 chr3 65576785 65578098 + 0 NA Intergenic Intergenic 31401 ENSMUSG00000034640.9 ENSMUSG00000034640 ENSMUST00000154094 Tiparp protein_coding Interval_143095 chr6 149311841 149313039 + 0 NA exon (ENSMUSG00000032712.16, exon 1 of 1) protein_coding-exon (ENSMUSG00000032712.16, exon 1 of 1) 1024 ENSMUSG00000032712.16 ENSMUSG00000032712 ENSMUST00000189837 Resf1 protein_coding Interval_117344 chr4 123125748 123125975 + 0 NA exon (ENSMUSG00000002384.2, exon 7 of 7) protein_coding-exon (ENSMUSG00000002384.2, exon 7 of 7) 6537 ENSMUSG00000002384.2 ENSMUSG00000002384 ENSMUST00000151850 Bmp8b protein_coding Interval_45430 chr13 55125209 55125433 + 0 NA intron (ENSMUSG00000021481.11, intron 4 of 4) protein_coding-intron (ENSMUSG00000021481.11, intron 5 of 6) 2862 ENSMUSG00000114481.1 ENSMUSG00000114481 ENSMUST00000224848 Gm46415 processed_pseudogene Interval_30724 chr11 96130190 96131170 + 0 NA Intergenic Intergenic -3106 ENSMUSG00000038756.13 ENSMUSG00000038756 ENSMUST00000107680 Ttll6 protein_coding Interval_35057 chr12 16904671 16904988 + 0 NA intron (ENSMUSG00000020580.10, intron 1 of 32) protein_coding-intron (ENSMUSG00000020580.10, intron 1 of 32) 17476 ENSMUSG00000113202.1 ENSMUSG00000113202 ENSMUST00000222207 Gm48291 processed_pseudogene Interval_67385 chr16 48266241 48266483 + 0 NA Intergenic Intergenic 4548 ENSMUSG00000116756.1 ENSMUSG00000116756 ENSMUST00000232184 Gm49770 processed_pseudogene Interval_10533 chr1 171553587 171553971 + 0 NA Intergenic Intergenic 12087 ENSMUSG00000103980.1 ENSMUSG00000103980 ENSMUST00000195218 Gm37450 processed_pseudogene Interval_88716 chr2 9955393 9956200 + 0 NA intron (ENSMUSG00000025782.12, intron 2 of 6) protein_coding-intron (ENSMUSG00000025782.12, intron 2 of 6) -14045 ENSMUSG00000025782.12 ENSMUSG00000025782 ENSMUST00000114907 Taf3 protein_coding Interval_11657 chr1 184042433 184043051 + 0 NA intron (ENSMUSG00000039384.8, intron 2 of 3) protein_coding-intron (ENSMUSG00000039384.8, intron 2 of 3) -8441 ENSMUSG00000044854.7 ENSMUSG00000044854 ENSMUST00000050306 1700056E22Rik protein_coding Interval_57604 chr15 12739282 12740472 + 0 NA promoter-TSS (ENSMUSG00000022197.16) protein_coding-promoter-TSS (ENSMUSG00000022197.16) 17587 ENSMUSG00000115201.1 ENSMUSG00000115201 ENSMUST00000227559 Gm49276 processed_pseudogene Interval_160173 chr8 106926942 106927638 + 0 NA TTS (ENSMUSG00000074108.1) processed_pseudogene-TTS (ENSMUSG00000074108.1) 1123 ENSMUSG00000074108.1 ENSMUSG00000074108 ENSMUST00000098432 Rpl10-ps2 processed_pseudogene Interval_104897 chr3 78792236 78793878 + 0 NA Intergenic Intergenic 34438 ENSMUSG00000102341.1 ENSMUSG00000102341 ENSMUST00000194471 Gm18952 processed_pseudogene Interval_87770 chr19 55750680 55750931 + 0 NA intron (ENSMUSG00000024985.20, intron 1 of 3) protein_coding-intron (ENSMUSG00000024985.20, intron 3 of 11) 8541 ENSMUSG00000024985.20 ENSMUSG00000024985 ENSMUST00000148666 Tcf7l2 protein_coding Interval_150172 chr7 107576040 107576232 + 0 NA intron (ENSMUSG00000051041.8, intron 2 of 3) protein_coding-intron (ENSMUSG00000051041.8, intron 2 of 2) 8370 ENSMUSG00000051041.8 ENSMUSG00000051041 ENSMUST00000239087 Olfml1 protein_coding Interval_43959 chr13 38450414 38450842 + 0 NA intron (ENSMUSG00000039004.6, intron 1 of 3) protein_coding-intron (ENSMUSG00000039004.6, intron 1 of 6) 11177 ENSMUSG00000114895.1 ENSMUSG00000114895 ENSMUST00000225893 4930579J19Rik antisense Interval_119486 chr4 137877001 137878184 + 0 NA intron (ENSMUSG00000057530.14, intron 1 of 1) protein_coding-intron (ENSMUSG00000057530.14, intron 1 of 19) 6345 ENSMUSG00000085823.7 ENSMUSG00000085823 ENSMUST00000156022 Gm13012 antisense Interval_52450 chr14 46555842 46556160 + 0 NA promoter-TSS (ENSMUSG00000085380.1) lincRNA-promoter-TSS (ENSMUSG00000085380.1) -302 ENSMUSG00000085380.1 ENSMUSG00000085380 ENSMUST00000129910 E130120K24Rik lincRNA Interval_162821 chr9 9567407 9567656 + 0 NA intron (ENSMUSG00000111284.1, intron 1 of 4) lincRNA-intron (ENSMUSG00000111284.1, intron 1 of 4) 3444 ENSMUSG00000111284.1 ENSMUSG00000111284 ENSMUST00000215363 Gm47334 lincRNA Interval_77433 chr17 88652736 88653613 + 0 NA intron (ENSMUSG00000033855.15, intron 4 of 4) protein_coding-intron (ENSMUSG00000033855.15, intron 4 of 4) 11591 ENSMUSG00000117567.1 ENSMUSG00000117567 ENSMUST00000234688 Gm50056 lincRNA Interval_43810 chr13 36770690 36771171 + 0 NA Intergenic Intergenic -35799 ENSMUSG00000039114.16 ENSMUSG00000039114 ENSMUST00000224960 Nrn1 protein_coding Interval_109069 chr3 135559310 135559502 + 0 NA intron (ENSMUSG00000028164.15, intron 3 of 3) protein_coding-intron (ENSMUSG00000028164.15, intron 13 of 16) -3785 ENSMUSG00000028164.15 ENSMUSG00000028164 ENSMUST00000153412 Manba protein_coding Interval_79104 chr18 24558693 24560124 + 0 NA TTS (ENSMUSG00000095437.1) miRNA-TTS (ENSMUSG00000095437.1) 806 ENSMUSG00000095437.1 ENSMUSG00000095437 ENSMUST00000116938 Gm23606 miRNA Interval_157102 chr8 65204248 65204499 + 0 NA Intergenic Intergenic 20129 ENSMUSG00000110283.1 ENSMUSG00000110283 ENSMUST00000211021 Gm45249 processed_pseudogene Interval_110696 chr4 6540055 6540512 + 0 NA TTS (ENSMUSG00000081388.1) processed_pseudogene-TTS (ENSMUSG00000081388.1) 722 ENSMUSG00000081388.1 ENSMUSG00000081388 ENSMUST00000117807 Gm11801 processed_pseudogene Interval_154013 chr8 11873560 11875646 + 0 NA intron (ENSMUSG00000109772.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000109772.1, intron 1 of 1) 444 ENSMUSG00000109772.1 ENSMUSG00000109772 ENSMUST00000210446 Gm39132 lincRNA Interval_166773 chr9 62531510 62532062 + 0 NA intron (ENSMUSG00000041729.15, intron 1 of 2) protein_coding-intron (ENSMUSG00000041729.15, intron 1 of 11) 16757 ENSMUSG00000084540.1 ENSMUSG00000084540 ENSMUST00000122591 n-R5s84 rRNA Interval_58762 chr15 37911212 37912385 + 0 NA Intergenic Intergenic -12082 ENSMUSG00000115326.1 ENSMUSG00000115326 ENSMUST00000226812 Gm35019 lincRNA Interval_143582 chr7 12961441 12962151 + 0 NA promoter-TSS (ENSMUSG00000097115.2) lincRNA-promoter-TSS (ENSMUSG00000097115.2) 2497 ENSMUSG00000102084.1 ENSMUSG00000102084 ENSMUST00000186106 Gm29638 lincRNA Interval_62003 chr15 85821164 85822387 + 0 NA promoter-TSS (ENSMUSG00000052496.5) protein_coding-promoter-TSS (ENSMUSG00000052496.5) -41 ENSMUSG00000052496.5 ENSMUSG00000052496 ENSMUST00000064370 Pkdrej protein_coding Interval_111814 chr4 31012059 31013012 + 0 NA Intergenic Intergenic 162477 ENSMUSG00000065053.1 ENSMUSG00000065053 ENSMUST00000083119 Gm25705 snRNA Interval_88442 chr2 5090544 5090809 + 0 NA Intergenic Intergenic -47100 ENSMUSG00000026676.7 ENSMUSG00000026676 ENSMUST00000027988 Ccdc3 protein_coding Interval_127159 chr5 100700684 100701572 + 0 NA intron (ENSMUSG00000035273.14, intron 3 of 10) protein_coding-intron (ENSMUSG00000035273.14, intron 3 of 11) 18577 ENSMUSG00000035273.14 ENSMUSG00000035273 ENSMUST00000112908 Hpse protein_coding Interval_5399 chr1 88489782 88490740 + 0 NA Intergenic Intergenic 19805 ENSMUSG00000062310.7 ENSMUSG00000062310 ENSMUST00000067625 Glrp1 protein_coding Interval_68518 chr16 78335835 78336041 + 0 NA intron (ENSMUSG00000022863.15, intron 3 of 3) protein_coding-intron (ENSMUSG00000022865.14, intron 6 of 6) 7530 ENSMUSG00000116707.1 ENSMUSG00000116707 ENSMUST00000232286 Gm49590 TEC Interval_83185 chr18 82617811 82619518 + 0 NA promoter-TSS (ENSMUSG00000041258.18) protein_coding-promoter-TSS (ENSMUSG00000041258.18) -32389 ENSMUSG00000118160.1 ENSMUSG00000118160 ENSMUST00000237388 Gm50347 unprocessed_pseudogene Interval_125450 chr5 67243030 67243623 + 0 NA Intergenic Intergenic -17428 ENSMUSG00000037720.16 ENSMUSG00000037720 ENSMUST00000163028 Tmem33 protein_coding Interval_26762 chr11 60301714 60302486 + 0 NA TTS (ENSMUSG00000098349.1) miRNA-TTS (ENSMUSG00000098349.1) 724 ENSMUSG00000098349.1 ENSMUSG00000098349 ENSMUST00000183802 Gm27711 miRNA Interval_13955 chr10 25020798 25021043 + 0 NA intron (ENSMUSG00000111970.1, intron 2 of 3) lincRNA-intron (ENSMUSG00000111970.1, intron 1 of 1) 20900 ENSMUSG00000111970.1 ENSMUSG00000111970 ENSMUST00000218700 Gm47715 lincRNA Interval_96782 chr2 128183599 128184133 + 0 NA intron (ENSMUSG00000074813.14, intron 6 of 7) lincRNA-intron (ENSMUSG00000074813.14, intron 5 of 6) -6121 ENSMUSG00000085750.1 ENSMUSG00000085750 ENSMUST00000152439 Gm14009 lincRNA Interval_108084 chr3 121430367 121430971 + 0 NA intron (ENSMUSG00000053931.11, intron 1 of 2) protein_coding-intron (ENSMUSG00000053931.11, intron 1 of 6) 2623 ENSMUSG00000106022.1 ENSMUSG00000106022 ENSMUST00000198374 Gm42929 TEC Interval_52332 chr14 45171386 45171788 + 0 NA intron (ENSMUSG00000021830.14, intron 8 of 8) protein_coding-intron (ENSMUSG00000021830.14, intron 8 of 20) 11524 ENSMUSG00000021830.14 ENSMUSG00000021830 ENSMUST00000123118 Txndc16 protein_coding Interval_142056 chr6 136820334 136822237 + 0 NA promoter-TSS (ENSMUSG00000030216.12) protein_coding-promoter-TSS (ENSMUSG00000030216.12) -6341 ENSMUSG00000047515.8 ENSMUSG00000047515 ENSMUST00000163640 BC049715 protein_coding Interval_146851 chr7 53369180 53370069 + 0 NA Intergenic Intergenic 442554 ENSMUSG00000070203.1 ENSMUSG00000070203 ENSMUST00000093693 Gm22444 snRNA Interval_39484 chr12 88360263 88361319 + 0 NA promoter-TSS (ENSMUSG00000021044.15) protein_coding-promoter-TSS (ENSMUSG00000021044.15) -534 ENSMUSG00000113903.1 ENSMUSG00000113903 ENSMUST00000221078 Gm5655 processed_pseudogene Interval_35301 chr12 20013148 20014170 + 0 NA Intergenic Intergenic 10882 ENSMUSG00000113287.1 ENSMUSG00000113287 ENSMUST00000221342 Gm40853 unprocessed_pseudogene Interval_111959 chr4 32839203 32840081 + 0 NA intron (ENSMUSG00000040183.13, intron 1 of 3) protein_coding-intron (ENSMUSG00000040183.13, intron 3 of 16) 21041 ENSMUSG00000040183.13 ENSMUSG00000040183 ENSMUST00000149650 Ankrd6 protein_coding Interval_144494 chr7 25451578 25453920 + 0 NA intron (ENSMUSG00000053714.8, intron 4 of 6) antisense-intron (ENSMUSG00000053714.8, intron 4 of 6) -9286 ENSMUSG00000081732.1 ENSMUSG00000081732 ENSMUST00000117570 Gm15495 processed_pseudogene Interval_89676 chr2 24473334 24475616 + 0 NA exon (ENSMUSG00000026976.15, exon 2 of 2) protein_coding-exon (ENSMUSG00000026976.15, exon 2 of 2) 1089 ENSMUSG00000026976.15 ENSMUSG00000026976 ENSMUST00000152614 Pax8 protein_coding Interval_54284 chr14 67159480 67160258 + 0 NA Intergenic Intergenic -9719 ENSMUSG00000114697.1 ENSMUSG00000114697 ENSMUST00000225163 Gm30806 lincRNA Interval_123889 chr5 36334072 36334871 + 0 NA intron (ENSMUSG00000029093.14, intron 1 of 4) protein_coding-intron (ENSMUSG00000029093.14, intron 1 of 26) 31447 ENSMUSG00000029093.14 ENSMUSG00000029093 ENSMUST00000141508 Sorcs2 protein_coding Interval_135161 chr6 37064269 37064602 + 0 NA promoter-TSS (ENSMUSG00000038665.15) protein_coding-promoter-TSS (ENSMUSG00000038665.15) 107585 ENSMUSG00000107310.1 ENSMUSG00000107310 ENSMUST00000202891 Gm7452 transcribed_processed_pseudogene Interval_62251 chr15 89173936 89174935 + 0 NA intron (ENSMUSG00000036606.17, intron 1 of 37) protein_coding-intron (ENSMUSG00000036606.17, intron 1 of 37) 11102 ENSMUSG00000098663.1 ENSMUSG00000098663 ENSMUST00000184207 Mir6958 miRNA Interval_97939 chr2 145934168 145935673 + 0 NA promoter-TSS (ENSMUSG00000001767.5) protein_coding-promoter-TSS (ENSMUSG00000001767.5) -206 ENSMUSG00000001767.5 ENSMUSG00000001767 ENSMUST00000147904 Crnkl1 protein_coding Interval_162498 chr9 3361745 3361963 + 0 NA intron (ENSMUSG00000025899.14, intron 7 of 7) protein_coding-intron (ENSMUSG00000025899.14, intron 8 of 11) 9197 ENSMUSG00000064956.1 ENSMUSG00000064956 ENSMUST00000083022 Gm24918 snoRNA Interval_123274 chr5 31061745 31062048 + 0 NA exon (ENSMUSG00000013629.16, exon 13 of 44) protein_coding-exon (ENSMUSG00000013629.16, exon 13 of 44) -12221 ENSMUSG00000013629.16 ENSMUSG00000013629 ENSMUST00000200917 Cad protein_coding Interval_119351 chr4 137076191 137076403 + 0 NA Intergenic Intergenic 41285 ENSMUSG00000085542.1 ENSMUSG00000085542 ENSMUST00000132824 1700037C06Rik lincRNA Interval_141163 chr6 125354398 125355834 + 0 NA intron (ENSMUSG00000030341.17, intron 2 of 3) protein_coding-intron (ENSMUSG00000030341.17, intron 1 of 9) -2649 ENSMUSG00000030341.17 ENSMUSG00000030341 ENSMUST00000134803 Tnfrsf1a protein_coding Interval_49189 chr13 109272025 109272293 + 0 NA intron (ENSMUSG00000021699.17, intron 1 of 14) protein_coding-intron (ENSMUSG00000021699.17, intron 1 of 14) -52585 ENSMUSG00000076946.2 ENSMUSG00000076946 ENSMUST00000103758 Mir582 miRNA Interval_16004 chr10 60050373 60051484 + 0 NA intron (ENSMUSG00000044475.14, intron 7 of 10) protein_coding-intron (ENSMUSG00000044475.14, intron 7 of 10) 48123 ENSMUSG00000044475.14 ENSMUSG00000044475 ENSMUST00000164083 Ascc1 protein_coding Interval_103179 chr3 36401526 36402375 + 0 NA Intergenic Intergenic -6753 ENSMUSG00000105281.1 ENSMUSG00000105281 ENSMUST00000196870 Gm17835 processed_pseudogene Interval_59675 chr15 57838228 57839153 + 0 NA exon (ENSMUSG00000071757.10, exon 4 of 4) protein_coding-exon (ENSMUSG00000071757.10, exon 4 of 4) 51704 ENSMUSG00000022365.6 ENSMUSG00000022365 ENSMUST00000226911 Derl1 protein_coding Interval_50684 chr14 18187086 18188436 + 0 NA Intergenic Intergenic -1279 ENSMUSG00000114678.1 ENSMUSG00000114678 ENSMUST00000224869 Gm48481 processed_pseudogene Interval_43764 chr13 36199533 36199803 + 0 NA intron (ENSMUSG00000021420.13, intron 2 of 7) protein_coding-intron (ENSMUSG00000021420.13, intron 1 of 6) -9945 ENSMUSG00000114407.1 ENSMUSG00000114407 ENSMUST00000223888 Gm48765 antisense Interval_5497 chr1 89282665 89282868 + 0 NA Intergenic Intergenic -25785 ENSMUSG00000102083.1 ENSMUSG00000102083 ENSMUST00000191231 Gm5259 processed_pseudogene Interval_91302 chr2 37560988 37561256 + 0 NA intron (ENSMUSG00000035437.15, intron 10 of 13) protein_coding-intron (ENSMUSG00000035437.15, intron 22 of 25) 25396 ENSMUSG00000026915.16 ENSMUSG00000026915 ENSMUST00000144206 Strbp protein_coding Interval_153197 chr7 142334201 142335323 + 0 NA intron (ENSMUSG00000045777.14, intron 2 of 2) protein_coding-intron (ENSMUSG00000045777.14, intron 3 of 3) -28468 ENSMUSG00000083812.3 ENSMUSG00000083812 ENSMUST00000119351 Gm5054 processed_pseudogene Interval_33564 chr11 117231666 117232305 + 0 NA promoter-TSS (ENSMUSG00000059248.13) protein_coding-promoter-TSS (ENSMUSG00000059248.13) 31452 ENSMUSG00000086050.1 ENSMUSG00000086050 ENSMUST00000123882 Gm16045 antisense Interval_10765 chr1 174469794 174470300 + 0 NA Intergenic Intergenic 27965 ENSMUSG00000066671.4 ENSMUSG00000066671 ENSMUST00000085861 Olfr220 protein_coding Interval_156049 chr8 43206607 43206842 + 0 NA Intergenic Intergenic 6756 ENSMUSG00000109974.1 ENSMUSG00000109974 ENSMUST00000209342 Gm2221 processed_pseudogene Interval_14223 chr10 29118400 29118819 + 0 NA Intergenic Intergenic -25450 ENSMUSG00000038916.7 ENSMUSG00000038916 ENSMUST00000214863 Soga3 protein_coding Interval_32319 chr11 106911573 106912194 + 0 NA intron (ENSMUSG00000018363.16, intron 2 of 19) protein_coding-intron (ENSMUSG00000018363.16, intron 1 of 18) 8476 ENSMUSG00000018363.16 ENSMUSG00000018363 ENSMUST00000144027 Smurf2 protein_coding Interval_104989 chr3 79542722 79543048 + 0 NA intron (ENSMUSG00000061175.12, intron 1 of 17) protein_coding-intron (ENSMUSG00000061175.12, intron 1 of 16) 9308 ENSMUSG00000089746.1 ENSMUSG00000089746 ENSMUST00000161319 Gm3513 sense_intronic Interval_67961 chr16 61380608 61380925 + 0 NA Intergenic Intergenic 3510 ENSMUSG00000092029.1 ENSMUSG00000092029 ENSMUST00000165914 Gm9027 processed_pseudogene Interval_149467 chr7 98834708 98837112 + 0 NA intron (ENSMUSG00000015957.12, intron 1 of 2) protein_coding-intron (ENSMUSG00000015957.12, intron 1 of 6) -11896 ENSMUSG00000015957.12 ENSMUSG00000015957 ENSMUST00000208062 Wnt11 protein_coding Interval_174109 chrX 135096129 135096959 + 0 NA Intergenic Intergenic 26440 ENSMUSG00000081146.1 ENSMUSG00000081146 ENSMUST00000120075 Gm6207 transcribed_unprocessed_pseudogene Interval_103842 chr3 53576405 53576918 + 0 NA intron (ENSMUSG00000037016.11, intron 4 of 23) protein_coding-intron (ENSMUSG00000037016.11, intron 4 of 23) -53641 ENSMUSG00000037016.11 ENSMUSG00000037016 ENSMUST00000199323 Frem2 protein_coding Interval_22073 chr11 6162832 6163302 + 0 NA intron (ENSMUSG00000053838.14, intron 1 of 2) protein_coding-intron (ENSMUSG00000053838.14, intron 2 of 5) 9969 ENSMUSG00000083022.1 ENSMUSG00000083022 ENSMUST00000117476 Rps15a-ps6 processed_pseudogene Interval_59208 chr15 48397598 48398188 + 0 NA intron (ENSMUSG00000022311.15, intron 5 of 70) protein_coding-intron (ENSMUSG00000022311.15, intron 5 of 70) -153415 ENSMUSG00000065742.1 ENSMUSG00000065742 ENSMUST00000083808 Gm25007 snRNA Interval_162743 chr9 8226987 8228095 + 0 NA intron (ENSMUSG00000031998.5, intron 2 of 2) transcribed_processed_pseudogene-intron (ENSMUSG00000031998.5, intron 2 of 2) 5571 ENSMUSG00000031998.5 ENSMUSG00000031998 ENSMUST00000213708 1700128F08Rik transcribed_processed_pseudogene Interval_73768 chr17 43458502 43458856 + 0 NA exon (ENSMUSG00000056492.6, exon 21 of 21) protein_coding-exon (ENSMUSG00000056492.6, exon 21 of 21) 4424 ENSMUSG00000064582.1 ENSMUSG00000064582 ENSMUST00000082648 Gm25135 snRNA Interval_147963 chr7 75909898 75910609 + 0 NA Intergenic Intergenic 61856 ENSMUSG00000055652.14 ENSMUSG00000055652 ENSMUST00000205887 Klhl25 protein_coding Interval_111859 chr4 32046595 32047516 + 0 NA Intergenic Intergenic -4683 ENSMUSG00000082398.1 ENSMUSG00000082398 ENSMUST00000118472 Gm11927 processed_pseudogene Interval_150089 chr7 105751527 105752512 + 0 NA promoter-TSS (ENSMUSG00000030894.5) protein_coding-promoter-TSS (ENSMUSG00000030894.5) 73 ENSMUSG00000030894.5 ENSMUSG00000030894 ENSMUST00000211560 Tpp1 protein_coding Interval_49808 chr13 116096614 116097488 + 0 NA TTS (ENSMUSG00000114956.1) processed_pseudogene-TTS (ENSMUSG00000114956.1) 1016 ENSMUSG00000114956.1 ENSMUSG00000114956 ENSMUST00000224590 Gm47893 processed_pseudogene Interval_161288 chr8 119528306 119529034 + 0 NA intron (ENSMUSG00000031835.16, intron 12 of 21) protein_coding-intron (ENSMUSG00000031835.16, intron 12 of 22) -27376 ENSMUSG00000034224.14 ENSMUSG00000034224 ENSMUST00000133821 Slc38a8 protein_coding Interval_110423 chr3 157979964 157981523 + 0 NA exon (ENSMUSG00000105643.1, exon 1 of 1) TEC-exon (ENSMUSG00000105643.1, exon 1 of 1) 495 ENSMUSG00000105643.1 ENSMUSG00000105643 ENSMUST00000199446 Gm42611 TEC Interval_109732 chr3 146392868 146393115 + 0 NA Intergenic Intergenic -5147 ENSMUSG00000088218.1 ENSMUSG00000088218 ENSMUST00000157593 Gm22078 snRNA Interval_47889 chr13 94187330 94187552 + 0 NA intron (ENSMUSG00000045312.12, intron 1 of 1) protein_coding-intron (ENSMUSG00000045312.12, intron 3 of 3) -47324 ENSMUSG00000087319.1 ENSMUSG00000087319 ENSMUST00000134284 Gm15907 lincRNA Interval_133949 chr6 16359756 16360293 + 0 NA Intergenic Intergenic 109926 ENSMUSG00000108295.2 ENSMUSG00000108295 ENSMUST00000203052 Gm36406 processed_transcript Interval_78591 chr18 14968029 14968206 + 0 NA TTS (ENSMUSG00000036225.15) protein_coding-TTS (ENSMUSG00000036225.15) -20878 ENSMUSG00000117450.1 ENSMUSG00000117450 ENSMUST00000234445 4933424G05Rik antisense Interval_80849 chr18 49359513 49360694 + 0 NA Intergenic Intergenic 31848 ENSMUSG00000117724.1 ENSMUSG00000117724 ENSMUST00000235797 Gm50231 processed_pseudogene Interval_125386 chr5 66602251 66603360 + 0 NA intron (ENSMUSG00000029207.16, intron 1 of 5) protein_coding-intron (ENSMUSG00000029207.16, intron 1 of 17) -7235 ENSMUSG00000106706.1 ENSMUSG00000106706 ENSMUST00000201865 C530043K16Rik TEC Interval_50997 chr14 21546733 21547802 + 0 NA intron (ENSMUSG00000021767.19, intron 2 of 5) protein_coding-intron (ENSMUSG00000021767.19, intron 2 of 16) 30392 ENSMUSG00000021767.19 ENSMUSG00000021767 ENSMUST00000226589 Kat6b protein_coding Interval_61869 chr15 84772446 84773478 + 0 NA TTS (ENSMUSG00000078954.9) protein_coding-TTS (ENSMUSG00000078954.9) 14487 ENSMUSG00000016624.15 ENSMUSG00000016624 ENSMUST00000160389 Phf21b protein_coding Interval_81492 chr18 61134647 61135728 + 0 NA intron (ENSMUSG00000024622.8, intron 16 of 17) protein_coding-intron (ENSMUSG00000024622.8, intron 19 of 20) 3426 ENSMUSG00000089125.1 ENSMUSG00000089125 ENSMUST00000158500 Gm26403 snRNA Interval_113558 chr4 56685004 56685909 + 0 NA Intergenic Intergenic -6421 ENSMUSG00000077663.1 ENSMUSG00000077663 ENSMUST00000104475 Gm26144 snoRNA Interval_57132 chr15 6787498 6787696 + 0 NA intron (ENSMUSG00000050310.9, intron 31 of 37) protein_coding-intron (ENSMUSG00000050310.9, intron 31 of 37) 79218 ENSMUSG00000050310.9 ENSMUSG00000050310 ENSMUST00000061656 Rictor protein_coding Interval_113396 chr4 54404583 54405240 + 0 NA Intergenic Intergenic -63441 ENSMUSG00000093183.2 ENSMUSG00000093183 ENSMUST00000175442 Gm25687 misc_RNA Interval_174143 chrX 136203623 136203933 + 0 NA promoter-TSS (ENSMUSG00000054034.10) protein_coding-promoter-TSS (ENSMUSG00000054034.10) -141 ENSMUSG00000054034.10 ENSMUSG00000054034 ENSMUST00000131510 Tceal5 protein_coding Interval_150557 chr7 112416200 112417835 + 0 NA Intergenic Intergenic -10888 ENSMUSG00000030770.15 ENSMUSG00000030770 ENSMUST00000126047 Parva protein_coding Interval_101301 chr2 180251103 180252118 + 0 NA Intergenic Intergenic -5769 ENSMUSG00000039001.12 ENSMUSG00000039001 ENSMUST00000145043 Rps21 protein_coding Interval_124358 chr5 44483534 44483802 + 0 NA intron (ENSMUSG00000039706.11, intron 5 of 8) protein_coding-intron (ENSMUSG00000039706.11, intron 5 of 7) 11753 ENSMUSG00000105282.1 ENSMUSG00000105282 ENSMUST00000200184 Gm42981 TEC Interval_32943 chr11 113284643 113285669 + 0 NA intron (ENSMUSG00000041654.15, intron 7 of 9) protein_coding-intron (ENSMUSG00000041654.15, intron 8 of 10) -75487 ENSMUSG00000085421.1 ENSMUSG00000085421 ENSMUST00000130373 4732490B19Rik lincRNA Interval_56446 chr14 118817725 118818252 + 0 NA intron (ENSMUSG00000022132.15, intron 1 of 3) protein_coding-intron (ENSMUSG00000022132.15, intron 1 of 4) 9043 ENSMUSG00000077661.1 ENSMUSG00000077661 ENSMUST00000104473 n-R5s51 rRNA Interval_141900 chr6 135220322 135220491 + 0 NA intron (ENSMUSG00000030207.15, intron 5 of 13) protein_coding-intron (ENSMUSG00000030207.15, intron 5 of 12) -11195 ENSMUSG00000030207.15 ENSMUSG00000030207 ENSMUST00000151951 Fam234b protein_coding Interval_12697 chr10 4363555 4365065 + 0 NA Intergenic Intergenic 9565 ENSMUSG00000075327.10 ENSMUSG00000075327 ENSMUST00000215860 Zbtb2 protein_coding Interval_8552 chr1 141782603 141783183 + 0 NA Intergenic Intergenic 236687 ENSMUSG00000103858.1 ENSMUSG00000103858 ENSMUST00000191749 Gm37604 TEC Interval_11787 chr1 185439260 185439462 + 0 NA intron (ENSMUSG00000051295.8, intron 1 of 1) lincRNA-intron (ENSMUSG00000051295.8, intron 1 of 1) 2458 ENSMUSG00000051295.8 ENSMUSG00000051295 ENSMUST00000143787 9630028B13Rik lincRNA Interval_109842 chr3 148867622 148867960 + 0 NA intron (ENSMUSG00000028184.12, intron 3 of 19) protein_coding-intron (ENSMUSG00000028184.12, intron 2 of 22) -121361 ENSMUSG00000104786.1 ENSMUSG00000104786 ENSMUST00000196445 Gm43573 antisense Interval_137962 chr6 83757967 83758640 + 0 NA TTS (ENSMUSG00000006269.7) protein_coding-TTS (ENSMUSG00000006269.7) -4383 ENSMUSG00000014747.6 ENSMUSG00000014747 ENSMUST00000206496 Ankrd53 protein_coding Interval_110013 chr3 152464677 152465923 + 0 NA intron (ENSMUSG00000039058.11, intron 6 of 6) protein_coding-intron (ENSMUSG00000039058.11, intron 13 of 13) 61452 ENSMUSG00000039058.11 ENSMUSG00000039058 ENSMUST00000198552 Ak5 protein_coding Interval_136846 chr6 61318319 61318513 + 0 NA intron (ENSMUSG00000039578.17, intron 1 of 3) protein_coding-intron (ENSMUSG00000039578.17, intron 2 of 9) -82191 ENSMUSG00000107757.1 ENSMUSG00000107757 ENSMUST00000204456 Gm43898 processed_pseudogene Interval_104703 chr3 69543008 69543285 + 0 NA intron (ENSMUSG00000027784.10, intron 1 of 2) protein_coding-intron (ENSMUSG00000027784.10, intron 2 of 3) 24318 ENSMUSG00000098006.1 ENSMUSG00000098006 ENSMUST00000183259 Gm8565 processed_pseudogene Interval_162020 chr8 124483580 124484434 + 0 NA Intergenic Intergenic -36812 ENSMUSG00000031979.17 ENSMUSG00000031979 ENSMUST00000129977 Cog2 protein_coding Interval_134300 chr6 24663683 24665632 + 0 NA exon (ENSMUSG00000029684.14, exon 1 of 11) protein_coding-exon (ENSMUSG00000029684.14, exon 1 of 11) -4288 ENSMUSG00000106946.1 ENSMUSG00000106946 ENSMUST00000200848 Gm42856 TEC Interval_46438 chr13 65268215 65268687 + 0 NA Intergenic Intergenic -3573 ENSMUSG00000112960.1 ENSMUSG00000112960 ENSMUST00000222969 Gm47254 unprocessed_pseudogene Interval_39957 chr12 100110031 100110881 + 0 NA exon (ENSMUSG00000021178.9, exon 1 of 5) protein_coding-exon (ENSMUSG00000021178.9, exon 1 of 5) 241 ENSMUSG00000021178.9 ENSMUSG00000021178 ENSMUST00000221308 Psmc1 protein_coding Interval_135315 chr6 38236867 38237186 + 0 NA intron (ENSMUSG00000063455.16, intron 1 of 19) protein_coding-intron (ENSMUSG00000063455.16, intron 1 of 19) 16983 ENSMUSG00000063455.16 ENSMUSG00000063455 ENSMUST00000152464 D630045J12Rik protein_coding Interval_150346 chr7 109766583 109766984 + 0 NA intron (ENSMUSG00000034825.14, intron 2 of 7) protein_coding-intron (ENSMUSG00000034825.14, intron 1 of 6) 7935 ENSMUSG00000094713.1 ENSMUSG00000094713 ENSMUST00000177941 Gm22822 snRNA Interval_52071 chr14 35105850 35106243 + 0 NA intron (ENSMUSG00000041078.7, intron 4 of 15) protein_coding-intron (ENSMUSG00000041078.7, intron 4 of 15) 113392 ENSMUSG00000115826.1 ENSMUSG00000115826 ENSMUST00000227262 Gm49034 processed_pseudogene Interval_158152 chr8 79262181 79262599 + 0 NA Intergenic Intergenic -13847 ENSMUSG00000031682.5 ENSMUSG00000031682 ENSMUST00000210889 1700011L22Rik protein_coding Interval_58590 chr15 36434423 36436335 + 0 NA intron (ENSMUSG00000115395.1, intron 2 of 3) lincRNA-intron (ENSMUSG00000115395.1, intron 2 of 3) 1312 ENSMUSG00000115395.1 ENSMUSG00000115395 ENSMUST00000227487 Gm49224 lincRNA Interval_153674 chr8 4452205 4452988 + 0 NA Intergenic Intergenic -12993 ENSMUSG00000108860.1 ENSMUSG00000108860 ENSMUST00000207275 Gm6070 processed_pseudogene Interval_124834 chr5 56007878 56008807 + 0 NA Intergenic Intergenic -148996 ENSMUSG00000105685.1 ENSMUSG00000105685 ENSMUST00000198120 Gm43315 processed_pseudogene Interval_35345 chr12 20887324 20888673 + 0 NA intron (ENSMUSG00000085642.8, intron 1 of 1) transcribed_unprocessed_pseudogene-intron (ENSMUSG00000085642.8, intron 1 of 1) 8640 ENSMUSG00000073179.3 ENSMUSG00000073179 ENSMUST00000084451 Gm10478 pseudogene Interval_15067 chr10 42300161 42301215 + 0 NA Intergenic Intergenic -9087 ENSMUSG00000088165.1 ENSMUSG00000088165 ENSMUST00000157540 Gm23533 misc_RNA Interval_108154 chr3 122026031 122026850 + 0 NA exon (ENSMUSG00000104869.1, exon 1 of 1) TEC-exon (ENSMUSG00000104869.1, exon 1 of 1) 2610 ENSMUSG00000104869.1 ENSMUSG00000104869 ENSMUST00000197868 Gm42544 TEC Interval_18123 chr10 82814209 82814598 + 0 NA intron (ENSMUSG00000056821.13, intron 1 of 2) lincRNA-intron (ENSMUSG00000056821.13, intron 3 of 4) 2280 ENSMUSG00000056821.13 ENSMUSG00000056821 ENSMUST00000076984 1700028I16Rik lincRNA Interval_15644 chr10 52758425 52758866 + 0 NA intron (ENSMUSG00000038602.7, intron 1 of 7) protein_coding-intron (ENSMUSG00000038602.7, intron 1 of 7) -42848 ENSMUSG00000112257.1 ENSMUSG00000112257 ENSMUST00000218509 Gm47623 TEC Interval_92006 chr2 52471797 52472267 + 0 NA intron (ENSMUSG00000017412.15, intron 4 of 13) protein_coding-intron (ENSMUSG00000017412.15, intron 4 of 13) 47020 ENSMUSG00000085315.7 ENSMUSG00000085315 ENSMUST00000143821 A430018G15Rik processed_transcript Interval_55007 chr14 76842467 76842656 + 0 NA intron (ENSMUSG00000115353.1, intron 1 of 3) lincRNA-intron (ENSMUSG00000115353.1, intron 1 of 3) 9740 ENSMUSG00000115353.1 ENSMUSG00000115353 ENSMUST00000227572 Gm48968 lincRNA Interval_111475 chr4 21957624 21958881 + 0 NA promoter-TSS (ENSMUSG00000028246.13) protein_coding-promoter-TSS (ENSMUSG00000028246.13) -204 ENSMUSG00000028246.13 ENSMUSG00000028246 ENSMUST00000155220 Faxc protein_coding Interval_154761 chr8 23176303 23176734 + 0 NA intron (ENSMUSG00000031545.6, intron 10 of 12) protein_coding-intron (ENSMUSG00000031545.6, intron 10 of 12) 23249 ENSMUSG00000063672.7 ENSMUSG00000063672 ENSMUST00000071588 Nkx6-3 protein_coding Interval_157251 chr8 68526048 68526282 + 0 NA intron (ENSMUSG00000036356.15, intron 1 of 1) protein_coding-intron (ENSMUSG00000036356.15, intron 3 of 9) 3722 ENSMUSG00000036356.15 ENSMUSG00000036356 ENSMUST00000139141 Csgalnact1 protein_coding Interval_8836 chr1 151457256 151457591 + 0 NA TTS (ENSMUSG00000026484.13) protein_coding-TTS (ENSMUSG00000026484.13) 12118 ENSMUSG00000103928.1 ENSMUSG00000103928 ENSMUST00000192826 Gm37893 TEC Interval_72275 chr17 28926356 28927527 + 0 NA intron (ENSMUSG00000087693.1, intron 1 of 2) antisense-intron (ENSMUSG00000087693.1, intron 1 of 2) 1478 ENSMUSG00000087693.1 ENSMUSG00000087693 ENSMUST00000141445 Gm16191 antisense Interval_13351 chr10 16692108 16692824 + 0 NA Intergenic Intergenic -76474 ENSMUSG00000112903.1 ENSMUSG00000112903 ENSMUST00000219627 Gm5948 processed_pseudogene Interval_70564 chr17 12045763 12046384 + 0 NA intron (ENSMUSG00000023826.16, intron 1 of 2) protein_coding-intron (ENSMUSG00000023826.16, intron 1 of 2) -73256 ENSMUSG00000023827.8 ENSMUSG00000023827 ENSMUST00000167905 Agpat4 protein_coding Interval_67277 chr16 45304596 45305224 + 0 NA Intergenic Intergenic 54539 ENSMUSG00000052013.15 ENSMUSG00000052013 ENSMUST00000231703 Btla protein_coding Interval_172807 chrX 50466015 50466774 + 0 NA Intergenic Intergenic -39812 ENSMUSG00000048173.5 ENSMUSG00000048173 ENSMUST00000219631 Olfr1324 protein_coding Interval_103957 chr3 55482551 55483162 + 0 NA promoter-TSS (ENSMUSG00000106354.1) TEC-promoter-TSS (ENSMUSG00000106354.1) -932 ENSMUSG00000106354.1 ENSMUSG00000106354 ENSMUST00000200221 Gm42607 TEC Interval_36945 chr12 55507052 55507965 + 0 NA Intergenic Intergenic 9787 ENSMUSG00000112348.1 ENSMUSG00000112348 ENSMUST00000218356 Gm36634 processed_transcript Interval_65417 chr16 22227419 22227633 + 0 NA Intergenic Intergenic -2865 ENSMUSG00000043870.9 ENSMUSG00000043870 ENSMUST00000121854 Gm5809 processed_pseudogene Interval_40232 chr12 102662645 102664276 + 0 NA intron (ENSMUSG00000057963.9, intron 2 of 4) protein_coding-intron (ENSMUSG00000057963.9, intron 2 of 9) 21560 ENSMUSG00000089324.1 ENSMUSG00000089324 ENSMUST00000158699 Mir1936 miRNA Interval_60830 chr15 77018770 77019273 + 0 NA intron (ENSMUSG00000018893.15, intron 3 of 4) protein_coding-intron (ENSMUSG00000018893.15, intron 2 of 3) 2942 ENSMUSG00000018893.15 ENSMUSG00000018893 ENSMUST00000229125 Mb protein_coding Interval_25627 chr11 50279714 50281075 + 0 NA intron (ENSMUSG00000050567.16, intron 1 of 3) protein_coding-intron (ENSMUSG00000050567.16, intron 1 of 4) 11410 ENSMUSG00000050567.16 ENSMUSG00000050567 ENSMUST00000059458 Maml1 protein_coding Interval_1953 chr1 34883018 34883227 + 0 NA Intergenic Intergenic 5466 ENSMUSG00000026123.11 ENSMUSG00000026123 ENSMUST00000191722 Plekhb2 protein_coding Interval_3613 chr1 60005761 60006711 + 0 NA exon (ENSMUSG00000026018.12, exon 8 of 11) protein_coding-exon (ENSMUSG00000026018.12, exon 8 of 11) 27055 ENSMUSG00000041040.12 ENSMUSG00000041040 ENSMUST00000189790 Fam117b protein_coding Interval_55610 chr14 95660730 95661899 + 0 NA Intergenic Intergenic 68666 ENSMUSG00000115679.1 ENSMUSG00000115679 ENSMUST00000228033 Gm48995 processed_pseudogene Interval_91532 chr2 41442275 41442487 + 0 NA intron (ENSMUSG00000049252.17, intron 2 of 13) protein_coding-intron (ENSMUSG00000049252.17, intron 17 of 90) 443524 ENSMUSG00000083260.1 ENSMUSG00000083260 ENSMUST00000121274 Gm13460 processed_pseudogene Interval_23329 chr11 21452812 21453172 + 0 NA Intergenic Intergenic -1638 ENSMUSG00000084412.1 ENSMUSG00000084412 ENSMUST00000120335 Gm12044 processed_pseudogene Interval_72079 chr17 27886834 27887756 + 0 NA exon (ENSMUSG00000039512.12, exon 14 of 21) protein_coding-exon (ENSMUSG00000039512.12, exon 14 of 21) -18317 ENSMUSG00000117161.1 ENSMUSG00000117161 ENSMUST00000233253 Gm49803 processed_pseudogene Interval_121605 chr5 3827095 3829352 + 0 NA exon (ENSMUSG00000000600.15, exon 1 of 1) protein_coding-exon (ENSMUSG00000000600.15, exon 1 of 1) -16964 ENSMUSG00000040367.2 ENSMUSG00000040367 ENSMUST00000143027 Lrrd1 protein_coding Interval_105752 chr3 89147300 89148216 + 0 NA TTS (ENSMUSG00000041237.12) protein_coding-TTS (ENSMUSG00000041237.12) 11584 ENSMUSG00000041237.12 ENSMUSG00000041237 ENSMUST00000148097 Pklr protein_coding Interval_81835 chr18 65154934 65155257 + 0 NA promoter-TSS (ENSMUSG00000024589.18) protein_coding-promoter-TSS (ENSMUSG00000024589.18) 72041 ENSMUSG00000024589.18 ENSMUSG00000024589 ENSMUST00000236100 Nedd4l protein_coding Interval_81761 chr18 64488441 64489502 + 0 NA promoter-TSS (ENSMUSG00000024588.9) protein_coding-promoter-TSS (ENSMUSG00000024588.9) -30 ENSMUSG00000024588.9 ENSMUSG00000024588 ENSMUST00000235843 Fech protein_coding Interval_15626 chr10 52428031 52428287 + 0 NA promoter-TSS (ENSMUSG00000023068.16) protein_coding-promoter-TSS (ENSMUSG00000023068.16) -772 ENSMUSG00000023068.16 ENSMUSG00000023068 ENSMUST00000218983 Nus1 protein_coding Interval_166296 chr9 58139932 58141165 + 0 NA TTS (ENSMUSG00000032327.14) protein_coding-TTS (ENSMUSG00000032327.14) 6473 ENSMUSG00000032327.14 ENSMUSG00000032327 ENSMUST00000134450 Stra6 protein_coding Interval_51560 chr14 30173847 30174125 + 0 NA intron (ENSMUSG00000015968.18, intron 7 of 47) protein_coding-intron (ENSMUSG00000015968.18, intron 7 of 48) -33752 ENSMUSG00000114650.1 ENSMUSG00000114650 ENSMUST00000224405 Gm47570 processed_pseudogene Interval_40839 chr12 108772963 108773218 + 0 NA Intergenic Intergenic -10120 ENSMUSG00000112971.1 ENSMUSG00000112971 ENSMUST00000222233 Gm33682 lincRNA Interval_37600 chr12 70201364 70202345 + 0 NA exon (ENSMUSG00000021069.17, exon 8 of 20) protein_coding-exon (ENSMUSG00000021069.17, exon 8 of 20) 5494 ENSMUSG00000021069.17 ENSMUSG00000021069 ENSMUST00000166609 Pygl protein_coding Interval_167084 chr9 65156246 65157219 + 0 NA intron (ENSMUSG00000032394.6, intron 2 of 13) protein_coding-intron (ENSMUSG00000032394.6, intron 2 of 13) 15520 ENSMUSG00000032394.6 ENSMUSG00000032394 ENSMUST00000217135 Igdcc3 protein_coding Interval_36846 chr12 54631240 54631491 + 0 NA Intergenic Intergenic 8775 ENSMUSG00000112145.1 ENSMUSG00000112145 ENSMUST00000219812 Gm6218 processed_pseudogene Interval_155965 chr8 41318532 41318719 + 0 NA intron (ENSMUSG00000031592.10, intron 30 of 38) protein_coding-intron (ENSMUSG00000031592.10, intron 29 of 37) 56148 ENSMUSG00000031591.14 ENSMUSG00000031591 ENSMUST00000143057 Asah1 protein_coding Interval_136255 chr6 52305761 52306836 + 0 NA Intergenic Intergenic 7207 ENSMUSG00000086126.1 ENSMUSG00000086126 ENSMUST00000137258 Evx1os antisense Interval_97487 chr2 137288570 137288952 + 0 NA exon (ENSMUSG00000085504.1, exon 1 of 5) lincRNA-exon (ENSMUSG00000085504.1, exon 1 of 5) 258 ENSMUSG00000085504.1 ENSMUSG00000085504 ENSMUST00000130262 Gm14055 lincRNA Interval_162518 chr9 3562560 3563706 + 0 NA intron (ENSMUSG00000041624.10, intron 1 of 4) protein_coding-intron (ENSMUSG00000041624.10, intron 1 of 7) 30245 ENSMUSG00000041624.10 ENSMUSG00000041624 ENSMUST00000212705 Gucy1a2 protein_coding Interval_43055 chr13 23510288 23510587 + 0 NA Intergenic Intergenic -7705 ENSMUSG00000104750.1 ENSMUSG00000104750 ENSMUST00000199903 n-TStga1 miRNA Interval_153956 chr8 11477435 11479387 + 0 NA exon (ENSMUSG00000031504.6, exon 1 of 2) protein_coding-exon (ENSMUSG00000031504.6, exon 1 of 2) 299 ENSMUSG00000031504.6 ENSMUSG00000031504 ENSMUST00000033900 Rab20 protein_coding Interval_12587 chr10 3639918 3640159 + 0 NA Intergenic Intergenic 99750 ENSMUSG00000019762.4 ENSMUSG00000019762 ENSMUST00000141745 Iyd protein_coding Interval_140586 chr6 119853871 119854741 + 0 NA Intergenic Intergenic -38614 ENSMUSG00000080719.1 ENSMUSG00000080719 ENSMUST00000121192 Gm15532 processed_pseudogene Interval_168867 chr9 88234691 88235364 + 0 NA Intergenic Intergenic -24868 ENSMUSG00000100782.1 ENSMUSG00000100782 ENSMUST00000190118 Gm28231 lincRNA Interval_150545 chr7 112225351 112226515 + 0 NA promoter-TSS (ENSMUSG00000038244.14) protein_coding-promoter-TSS (ENSMUSG00000038244.14) -66876 ENSMUSG00000030772.6 ENSMUSG00000030772 ENSMUST00000033036 Dkk3 protein_coding Interval_115482 chr4 99317640 99318045 + 0 NA Intergenic Intergenic 21942 ENSMUSG00000070891.2 ENSMUSG00000070891 ENSMUST00000094955 Gm12689 protein_coding Interval_102635 chr3 28736981 28738054 + 0 NA intron (ENSMUSG00000091329.2, intron 2 of 2) antisense-intron (ENSMUSG00000091329.2, intron 2 of 2) 4723 ENSMUSG00000091329.2 ENSMUSG00000091329 ENSMUST00000193387 1700112D23Rik antisense Interval_30864 chr11 96954843 96956805 + 0 NA exon (ENSMUSG00000018678.13, exon 7 of 8) protein_coding-exon (ENSMUSG00000018678.13, exon 7 of 8) 11512 ENSMUSG00000078700.10 ENSMUSG00000078700 ENSMUST00000186326 D030028A08Rik processed_transcript Interval_27919 chr11 70853719 70854015 + 0 NA intron (ENSMUSG00000020817.16, intron 2 of 18) protein_coding-intron (ENSMUSG00000020817.16, intron 1 of 17) 9075 ENSMUSG00000020817.16 ENSMUSG00000020817 ENSMUST00000178245 Rabep1 protein_coding Interval_67054 chr16 42231425 42231955 + 0 NA Intergenic Intergenic -34288 ENSMUSG00000116990.1 ENSMUSG00000116990 ENSMUST00000231310 Gm49738 processed_pseudogene Interval_81134 chr18 54734224 54734399 + 0 NA Intergenic Intergenic -31821 ENSMUSG00000118307.1 ENSMUSG00000118307 ENSMUST00000235369 Gm5821 processed_pseudogene Interval_58497 chr15 35209666 35209977 + 0 NA intron (ENSMUSG00000115345.1, intron 3 of 4) lincRNA-intron (ENSMUSG00000115345.1, intron 3 of 4) 9017 ENSMUSG00000115345.1 ENSMUSG00000115345 ENSMUST00000228112 Gm33497 lincRNA Interval_80502 chr18 42996147 42996519 + 0 NA intron (ENSMUSG00000117792.1, intron 2 of 3) protein_coding-intron (ENSMUSG00000024500.20, intron 1 of 8) 60863 ENSMUSG00000084959.1 ENSMUSG00000084959 ENSMUST00000151215 4933407I08Rik antisense Interval_68494 chr16 78216948 78217805 + 0 NA Intergenic Intergenic -22882 ENSMUSG00000077451.1 ENSMUSG00000077451 ENSMUST00000104263 Gm25916 snoRNA Interval_3801 chr1 63164279 63164575 + 0 NA TTS (ENSMUSG00000025968.16) protein_coding-TTS (ENSMUSG00000025968.16) 2572 ENSMUSG00000077884.2 ENSMUSG00000077884 ENSMUST00000104692 Gm24557 miRNA Interval_125848 chr5 74981209 74982043 + 0 NA Intergenic Intergenic 7440 ENSMUSG00000107306.1 ENSMUSG00000107306 ENSMUST00000201367 Gm42577 TEC Interval_33083 chr11 114280785 114282499 + 0 NA Intergenic Intergenic 29799 ENSMUSG00000075431.6 ENSMUSG00000075431 ENSMUST00000130963 Gm11691 lincRNA Interval_73591 chr17 40879877 40881010 + 0 NA exon (ENSMUSG00000054951.3, exon 1 of 2) protein_coding-exon (ENSMUSG00000054951.3, exon 1 of 2) 115 ENSMUSG00000054951.3 ENSMUSG00000054951 ENSMUST00000233122 9130008F23Rik protein_coding Interval_13630 chr10 20290213 20291008 + 0 NA Intergenic Intergenic -2175 ENSMUSG00000111064.1 ENSMUSG00000111064 ENSMUST00000214614 Gm30285 processed_pseudogene Interval_150572 chr7 112535114 112536238 + 0 NA promoter-TSS (ENSMUSG00000085049.1) antisense-promoter-TSS (ENSMUSG00000085049.1) 7 ENSMUSG00000085049.1 ENSMUSG00000085049 ENSMUST00000154848 Parvaos antisense Interval_67683 chr16 55940824 55942008 + 0 NA promoter-TSS (ENSMUSG00000116653.1) processed_pseudogene-promoter-TSS (ENSMUSG00000116653.1) -705 ENSMUSG00000116653.1 ENSMUSG00000116653 ENSMUST00000231662 Gm8900 processed_pseudogene Interval_95893 chr2 118140954 118141748 + 0 NA intron (ENSMUSG00000027344.14, intron 1 of 3) protein_coding-intron (ENSMUSG00000027344.14, intron 1 of 3) -17304 ENSMUSG00000101859.1 ENSMUSG00000101859 ENSMUST00000190311 Gm29233 lincRNA Interval_12530 chr1 194890152 194891040 + 0 NA Intergenic Intergenic 31939 ENSMUSG00000084631.1 ENSMUSG00000084631 ENSMUST00000122682 Gm23885 misc_RNA Interval_172727 chrX 47979426 47979906 + 0 NA Intergenic Intergenic 41275 ENSMUSG00000001173.15 ENSMUSG00000001173 ENSMUST00000115013 Ocrl protein_coding Interval_79100 chr18 24528873 24531151 + 0 NA promoter-TSS (ENSMUSG00000040446.4) protein_coding-promoter-TSS (ENSMUSG00000040446.4) 82 ENSMUSG00000040446.4 ENSMUSG00000040446 ENSMUST00000234403 Rprd1a protein_coding Interval_77085 chr17 86405362 86405588 + 0 NA intron (ENSMUSG00000045038.14, intron 2 of 14) protein_coding-intron (ENSMUSG00000045038.14, intron 3 of 15) -85087 ENSMUSG00000045038.14 ENSMUSG00000045038 ENSMUST00000136986 Prkce protein_coding Interval_84793 chr19 16780243 16781672 + 0 NA promoter-TSS (ENSMUSG00000046230.11) protein_coding-promoter-TSS (ENSMUSG00000046230.11) 410 ENSMUSG00000046388.4 ENSMUSG00000046388 ENSMUST00000051080 Gm9806 pseudogene Interval_156835 chr8 60954140 60954920 + 0 NA intron (ENSMUSG00000004319.15, intron 1 of 11) protein_coding-intron (ENSMUSG00000004319.15, intron 2 of 13) 28714 ENSMUSG00000004319.15 ENSMUSG00000004319 ENSMUST00000145493 Clcn3 protein_coding Interval_22153 chr11 6658160 6658822 + 0 NA promoter-TSS (ENSMUSG00000041046.7) protein_coding-promoter-TSS (ENSMUSG00000041046.7) -74 ENSMUSG00000041046.7 ENSMUSG00000041046 ENSMUST00000139540 Ramp3 protein_coding Interval_70216 chr17 6763527 6764412 + 0 NA intron (ENSMUSG00000052397.8, intron 1 of 12) protein_coding-intron (ENSMUSG00000052397.8, intron 1 of 12) -21148 ENSMUSG00000052397.8 ENSMUSG00000052397 ENSMUST00000131131 Ezr protein_coding Interval_71271 chr17 21791858 21793494 + 0 NA Intergenic Intergenic 5820 ENSMUSG00000117056.1 ENSMUSG00000117056 ENSMUST00000233979 Gm18270 processed_pseudogene Interval_136980 chr6 65407187 65407830 + 0 NA intron (ENSMUSG00000029917.15, intron 1 of 2) protein_coding-intron (ENSMUSG00000029917.15, intron 1 of 2) -8512 ENSMUSG00000107584.1 ENSMUSG00000107584 ENSMUST00000204507 Gm18716 processed_pseudogene Interval_64398 chr16 11105803 11106660 + 0 NA exon (ENSMUSG00000022498.16, exon 5 of 5) protein_coding-exon (ENSMUSG00000022498.16, exon 5 of 5) 28322 ENSMUSG00000022498.16 ENSMUSG00000022498 ENSMUST00000118679 Txndc11 protein_coding Interval_35366 chr12 21075911 21077579 + 0 NA intron (ENSMUSG00000052632.16, intron 4 of 9) protein_coding-intron (ENSMUSG00000052632.16, intron 4 of 9) 33786 ENSMUSG00000092229.3 ENSMUSG00000092229 ENSMUST00000174304 Gm5977 transcribed_unprocessed_pseudogene Interval_32640 chr11 109358645 109361302 + 0 NA intron (ENSMUSG00000056687.9, intron 1 of 2) antisense-intron (ENSMUSG00000056687.9, intron 1 of 1) -2858 ENSMUSG00000020611.14 ENSMUSG00000020611 ENSMUST00000020930 Gna13 protein_coding Interval_74722 chr17 56154516 56154779 + 0 NA Intergenic Intergenic -7830 ENSMUSG00000044469.8 ENSMUSG00000044469 ENSMUST00000077788 Tnfaip8l1 protein_coding Interval_88272 chr2 3175709 3176413 + 0 NA intron (ENSMUSG00000050530.14, intron 1 of 7) protein_coding-intron (ENSMUSG00000050530.14, intron 1 of 7) 57679 ENSMUSG00000050530.14 ENSMUSG00000050530 ENSMUST00000062934 Fam171a1 protein_coding Interval_85864 chr19 32507267 32507901 + 0 NA intron (ENSMUSG00000024896.9, intron 4 of 4) protein_coding-intron (ENSMUSG00000024896.9, intron 4 of 4) 21661 ENSMUSG00000024896.9 ENSMUSG00000024896 ENSMUST00000236287 Minpp1 protein_coding Interval_109619 chr3 145365383 145365624 + 0 NA intron (ENSMUSG00000028197.4, intron 18 of 59) protein_coding-intron (ENSMUSG00000028197.4, intron 18 of 59) 52541 ENSMUSG00000105619.1 ENSMUSG00000105619 ENSMUST00000197919 9530034A14Rik antisense Interval_62484 chr15 93406804 93407171 + 0 NA intron (ENSMUSG00000036167.16, intron 1 of 2) protein_coding-intron (ENSMUSG00000036167.16, intron 1 of 9) 7779 ENSMUSG00000036167.16 ENSMUSG00000036167 ENSMUST00000229721 Pphln1 protein_coding Interval_12610 chr10 3891500 3892654 + 0 NA intron (ENSMUSG00000040624.18, intron 2 of 15) protein_coding-intron (ENSMUSG00000040624.18, intron 2 of 15) -22470 ENSMUSG00000082123.1 ENSMUSG00000082123 ENSMUST00000117631 Gm16149 processed_pseudogene Interval_126818 chr5 93159131 93159426 + 0 NA intron (ENSMUSG00000058013.11, intron 5 of 9) protein_coding-intron (ENSMUSG00000058013.11, intron 5 of 9) -17692 ENSMUSG00000107019.1 ENSMUSG00000107019 ENSMUST00000202150 Gm43682 TEC Interval_18851 chr10 91281345 91282539 + 0 NA Intergenic Intergenic -22598 ENSMUSG00000110847.1 ENSMUSG00000110847 ENSMUST00000215985 Gm18705 processed_pseudogene Interval_6227 chr1 103042019 103042290 + 0 NA Intergenic Intergenic -88606 ENSMUSG00000087908.1 ENSMUSG00000087908 ENSMUST00000157283 Gm22034 snoRNA Interval_110306 chr3 156413828 156415387 + 0 NA Intergenic Intergenic 147080 ENSMUSG00000085084.7 ENSMUSG00000085084 ENSMUST00000140941 4930570G19Rik lincRNA Interval_126921 chr5 97190572 97190803 + 0 NA Intergenic Intergenic -4899 ENSMUSG00000105850.1 ENSMUSG00000105850 ENSMUST00000199885 Gm2861 lincRNA Interval_113226 chr4 50590082 50590351 + 0 NA Intergenic Intergenic 303470 ENSMUSG00000095394.1 ENSMUSG00000095394 ENSMUST00000104120 Gm25485 snoRNA Interval_110061 chr3 152897405 152897737 + 0 NA intron (ENSMUSG00000039037.5, intron 2 of 4) protein_coding-intron (ENSMUSG00000039037.5, intron 2 of 4) -21354 ENSMUSG00000090040.1 ENSMUSG00000090040 ENSMUST00000162856 Gm16232 processed_pseudogene Interval_145249 chr7 30916576 30918045 + 0 NA intron (ENSMUSG00000108546.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000108546.1, intron 1 of 2) 327 ENSMUSG00000108546.1 ENSMUSG00000108546 ENSMUST00000206970 Gm44662 lincRNA Interval_173871 chrX 106479848 106480169 + 0 NA intron (ENSMUSG00000033737.14, intron 1 of 26) protein_coding-intron (ENSMUSG00000033737.14, intron 1 of 26) -45165 ENSMUSG00000033737.14 ENSMUSG00000033737 ENSMUST00000140707 Fndc3c1 protein_coding Interval_167586 chr9 70794818 70796034 + 0 NA Intergenic Intergenic 4211 ENSMUSG00000087744.1 ENSMUSG00000087744 ENSMUST00000157119 Gm25149 miRNA Interval_9395 chr1 156770319 156770863 + 0 NA Intergenic Intergenic -22921 ENSMUSG00000046057.4 ENSMUSG00000046057 ENSMUST00000121352 Gm15428 processed_pseudogene Interval_16721 chr10 67209953 67210246 + 0 NA intron (ENSMUSG00000037876.17, intron 3 of 25) protein_coding-intron (ENSMUSG00000037876.17, intron 3 of 25) 24351 ENSMUSG00000037876.17 ENSMUSG00000037876 ENSMUST00000173236 Jmjd1c protein_coding Interval_163865 chr9 27278531 27279257 + 0 NA Intergenic Intergenic 14450 ENSMUSG00000111387.1 ENSMUSG00000111387 ENSMUST00000217080 Gm48803 lincRNA Interval_57268 chr15 8255280 8256845 + 0 NA intron (ENSMUSG00000039801.7, intron 45 of 52) protein_coding-intron (ENSMUSG00000039801.7, intron 45 of 52) 32919 ENSMUSG00000039801.7 ENSMUSG00000039801 ENSMUST00000128772 Cplane1 protein_coding Interval_174773 chrX 166463660 166463900 + 0 NA intron (ENSMUSG00000079316.10, intron 1 of 2) protein_coding-intron (ENSMUSG00000079316.10, intron 2 of 4) 11655 ENSMUSG00000079316.10 ENSMUSG00000079316 ENSMUST00000149315 Rab9 protein_coding Interval_99708 chr2 164426049 164426462 + 0 NA intron (ENSMUSG00000017009.3, intron 4 of 4) protein_coding-intron (ENSMUSG00000017009.3, intron 4 of 4) 17632 ENSMUSG00000017009.3 ENSMUSG00000017009 ENSMUST00000142909 Sdc4 protein_coding Interval_86492 chr19 41073491 41074348 + 0 NA intron (ENSMUSG00000050121.9, intron 1 of 5) protein_coding-intron (ENSMUSG00000050121.9, intron 1 of 5) -5796 ENSMUSG00000050121.9 ENSMUSG00000050121 ENSMUST00000087176 Opalin protein_coding Interval_52230 chr14 40891539 40893106 + 0 NA intron (ENSMUSG00000037833.14, intron 1 of 3) protein_coding-intron (ENSMUSG00000037833.14, intron 1 of 7) 944 ENSMUSG00000037833.14 ENSMUSG00000037833 ENSMUST00000225854 Sh2d4b protein_coding Interval_121181 chr4 153858199 153858531 + 0 NA Intergenic Intergenic -18019 ENSMUSG00000077519.1 ENSMUSG00000077519 ENSMUST00000104331 Gm25880 snoRNA Interval_91313 chr2 37713287 37713600 + 0 NA Intergenic Intergenic -25159 ENSMUSG00000092958.1 ENSMUSG00000092958 ENSMUST00000175217 Mir5128 miRNA Interval_57731 chr15 17195608 17195889 + 0 NA Intergenic Intergenic -118809 ENSMUSG00000115182.1 ENSMUSG00000115182 ENSMUST00000227358 Gm49128 lincRNA Interval_76421 chr17 80091775 80092409 + 0 NA Intergenic Intergenic -12845 ENSMUSG00000088276.1 ENSMUSG00000088276 ENSMUST00000157651 Gm23125 snRNA Interval_131594 chr5 138563587 138563852 + 0 NA intron (ENSMUSG00000029526.5, intron 2 of 3) protein_coding-intron (ENSMUSG00000029526.5, intron 2 of 5) 993 ENSMUSG00000029526.5 ENSMUSG00000029526 ENSMUST00000198778 1700123K08Rik protein_coding Interval_50351 chr14 11996150 11996521 + 0 NA intron (ENSMUSG00000021745.14, intron 4 of 29) protein_coding-intron (ENSMUSG00000021745.14, intron 4 of 29) -15127 ENSMUSG00000085883.2 ENSMUSG00000085883 ENSMUST00000151564 Gm3848 antisense Interval_121521 chr5 3146314 3147332 + 0 NA Intergenic Intergenic 23046 ENSMUSG00000091483.1 ENSMUSG00000091483 ENSMUST00000162728 Gm8715 unprocessed_pseudogene Interval_58133 chr15 28315714 28316344 + 0 NA intron (ENSMUSG00000022262.8, intron 35 of 78) protein_coding-intron (ENSMUSG00000022262.8, intron 35 of 78) 112277 ENSMUSG00000022262.8 ENSMUSG00000022262 ENSMUST00000067048 Dnah5 protein_coding Interval_10192 chr1 167000352 167002851 + 0 NA promoter-TSS (ENSMUSG00000060568.14) protein_coding-promoter-TSS (ENSMUSG00000060568.14) 184 ENSMUSG00000060568.14 ENSMUSG00000060568 ENSMUST00000128373 Fam78b protein_coding Interval_24193 chr11 31155629 31155949 + 0 NA Intergenic Intergenic 26673 ENSMUSG00000091195.1 ENSMUSG00000091195 ENSMUST00000165626 Gm17332 protein_coding Interval_6787 chr1 119475372 119476286 + 0 NA intron (ENSMUSG00000004451.14, intron 2 of 2) protein_coding-intron (ENSMUSG00000004451.14, intron 4 of 4) -23648 ENSMUSG00000101437.1 ENSMUSG00000101437 ENSMUST00000190805 Gm29454 processed_pseudogene Interval_120239 chr4 144765496 144765966 + 0 NA promoter-TSS (ENSMUSG00000077327.1) snRNA-promoter-TSS (ENSMUSG00000077327.1) 61 ENSMUSG00000077327.1 ENSMUSG00000077327 ENSMUST00000104139 Gm25938 snRNA Interval_116812 chr4 117403021 117403758 + 0 NA intron (ENSMUSG00000028677.19, intron 2 of 2) protein_coding-intron (ENSMUSG00000028677.19, intron 2 of 14) -42561 ENSMUSG00000086876.1 ENSMUSG00000086876 ENSMUST00000136115 Gm12828 antisense Interval_65138 chr16 20109078 20109343 + 0 NA intron (ENSMUSG00000062901.3, intron 3 of 7) protein_coding-intron (ENSMUSG00000062901.3, intron 3 of 7) 11625 ENSMUSG00000062901.3 ENSMUSG00000062901 ENSMUST00000231842 Klhl24 protein_coding Interval_42390 chr13 12594096 12595007 + 0 NA intron (ENSMUSG00000057069.7, intron 9 of 15) protein_coding-intron (ENSMUSG00000057069.7, intron 9 of 15) 4986 ENSMUSG00000065158.1 ENSMUSG00000065158 ENSMUST00000083224 Gm25483 snoRNA Interval_123006 chr5 28367337 28367527 + 0 NA intron (ENSMUSG00000048271.14, intron 8 of 17) protein_coding-intron (ENSMUSG00000048271.14, intron 9 of 18) -26623 ENSMUSG00000048271.14 ENSMUSG00000048271 ENSMUST00000133313 Rbm33 protein_coding Interval_32360 chr11 107147316 107147876 + 0 NA Intergenic Intergenic -9812 ENSMUSG00000087596.1 ENSMUSG00000087596 ENSMUST00000129501 Gm11715 antisense Interval_144193 chr7 19889857 19890500 + 0 NA Intergenic Intergenic -2213 ENSMUSG00000049848.7 ENSMUSG00000049848 ENSMUST00000052605 Ceacam19 protein_coding Interval_141894 chr6 135193567 135194021 + 0 NA exon (ENSMUSG00000108239.1, exon 5 of 5) antisense-exon (ENSMUSG00000108239.1, exon 5 of 5) 5314 ENSMUSG00000108239.1 ENSMUSG00000108239 ENSMUST00000204330 Gm19434 antisense Interval_12595 chr10 3785351 3786502 + 0 NA intron (ENSMUSG00000040624.18, intron 1 of 7) protein_coding-intron (ENSMUSG00000040624.18, intron 1 of 16) -48953 ENSMUSG00000040624.18 ENSMUSG00000040624 ENSMUST00000141367 Plekhg1 protein_coding Interval_107465 chr3 107895545 107896342 + 0 NA promoter-TSS (ENSMUSG00000086968.8) antisense-promoter-TSS (ENSMUSG00000086968.8) 2 ENSMUSG00000004032.10 ENSMUSG00000004032 ENSMUST00000169365 Gstm5 protein_coding Interval_847 chr1 12586800 12587462 + 0 NA Intergenic Intergenic 21554 ENSMUSG00000097628.1 ENSMUSG00000097628 ENSMUST00000181461 Gm2383 processed_pseudogene Interval_10407 chr1 170521059 170523066 + 0 NA intron (ENSMUSG00000038473.14, intron 1 of 7) protein_coding-intron (ENSMUSG00000038473.14, intron 1 of 3) -108859 ENSMUSG00000102193.1 ENSMUSG00000102193 ENSMUST00000194441 Gm7299 processed_pseudogene Interval_135350 chr6 38558863 38559434 + 0 NA promoter-TSS (ENSMUSG00000029823.16) protein_coding-promoter-TSS (ENSMUSG00000029823.16) 7814 ENSMUSG00000029823.16 ENSMUSG00000029823 ENSMUST00000160430 Luc7l2 protein_coding Interval_70020 chr17 4625770 4625957 + 0 NA Intergenic Intergenic -9115 ENSMUSG00000116767.1 ENSMUSG00000116767 ENSMUST00000232624 4930517M08Rik lincRNA Interval_1736 chr1 33271287 33272091 + 0 NA Intergenic Intergenic -21987 ENSMUSG00000065223.1 ENSMUSG00000065223 ENSMUST00000083289 Gm25792 snRNA Interval_117371 chr4 123303897 123304336 + 0 NA Intergenic Intergenic 3101 ENSMUSG00000118657.1 ENSMUSG00000118657 ENSMUST00000239455 AL606917.1 unprocessed_pseudogene Interval_6900 chr1 120537932 120538835 + 0 NA Intergenic Intergenic -33627 ENSMUSG00000026390.7 ENSMUSG00000026390 ENSMUST00000186432 Marco protein_coding Interval_115398 chr4 98634966 98635193 + 0 NA intron (ENSMUSG00000061859.17, intron 31 of 33) protein_coding-intron (ENSMUSG00000061859.17, intron 5 of 15) -26558 ENSMUSG00000076294.1 ENSMUSG00000076294 ENSMUST00000102339 Gm26154 miRNA Interval_169665 chr9 99947176 99947689 + 0 NA promoter-TSS (ENSMUSG00000099631.1) processed_pseudogene-promoter-TSS (ENSMUSG00000099631.1) -43 ENSMUSG00000099631.1 ENSMUSG00000099631 ENSMUST00000186995 Gm8641 processed_pseudogene Interval_76983 chr17 85380001 85380405 + 0 NA intron (ENSMUSG00000071037.6, intron 3 of 10) protein_coding-intron (ENSMUSG00000071037.6, intron 3 of 10) -118430 ENSMUSG00000097803.1 ENSMUSG00000097803 ENSMUST00000181130 Rpl31-ps16 processed_pseudogene Interval_26373 chr11 57467397 57468420 + 0 NA Intergenic Intergenic 18801 ENSMUSG00000082476.1 ENSMUSG00000082476 ENSMUST00000118824 Gm12242 processed_pseudogene Interval_168890 chr9 88422572 88422812 + 0 NA intron (ENSMUSG00000032422.18, intron 2 of 27) protein_coding-intron (ENSMUSG00000032422.18, intron 2 of 24) 16259 ENSMUSG00000032422.18 ENSMUSG00000032422 ENSMUST00000126563 Snx14 protein_coding Interval_107960 chr3 117498364 117498712 + 0 NA intron (ENSMUSG00000033342.15, intron 1 of 5) protein_coding-intron (ENSMUSG00000033342.15, intron 1 of 5) 13454 ENSMUSG00000033342.15 ENSMUSG00000033342 ENSMUST00000106473 Plppr5 protein_coding Interval_147227 chr7 64821080 64821262 + 0 NA intron (ENSMUSG00000030518.17, intron 2 of 3) protein_coding-intron (ENSMUSG00000030518.17, intron 3 of 9) 51826 ENSMUSG00000070520.4 ENSMUSG00000070520 ENSMUST00000094331 Nsmce3 protein_coding Interval_118330 chr4 130321266 130321722 + 0 NA intron (ENSMUSG00000028772.19, intron 5 of 5) protein_coding-intron (ENSMUSG00000028772.19, intron 7 of 7) -12821 ENSMUSG00000073752.2 ENSMUSG00000073752 ENSMUST00000097865 Gm10570 antisense Interval_62593 chr15 95131564 95132005 + 0 NA intron (ENSMUSG00000100603.6, intron 3 of 3) sense_intronic-intron (ENSMUSG00000100603.6, intron 2 of 2) 30610 ENSMUSG00000100603.6 ENSMUSG00000100603 ENSMUST00000185302 1700129L04Rik sense_intronic Interval_80806 chr18 47358325 47359456 + 0 NA intron (ENSMUSG00000019647.16, intron 1 of 16) protein_coding-intron (ENSMUSG00000019647.16, intron 1 of 18) -25542 ENSMUSG00000019647.16 ENSMUSG00000019647 ENSMUST00000144223 Sema6a protein_coding Interval_162045 chr8 124688530 124688840 + 0 NA exon (ENSMUSG00000037300.19, exon 7 of 18) protein_coding-exon (ENSMUSG00000037300.19, exon 7 of 18) -25316 ENSMUSG00000031983.7 ENSMUSG00000031983 ENSMUST00000034464 2310022B05Rik protein_coding Interval_52099 chr14 36017248 36018198 + 0 NA Intergenic Intergenic 3775 ENSMUSG00000115237.1 ENSMUSG00000115237 ENSMUST00000227667 Gm46474 unprocessed_pseudogene Interval_35460 chr12 22711473 22712660 + 0 NA Intergenic Intergenic -13179 ENSMUSG00000113413.1 ENSMUSG00000113413 ENSMUST00000221121 Gm21941 unprocessed_pseudogene Interval_153427 chr7 144677742 144679874 + 0 NA promoter-TSS (ENSMUSG00000031075.19) protein_coding-promoter-TSS (ENSMUSG00000031075.19) 59758 ENSMUSG00000031075.19 ENSMUSG00000031075 ENSMUST00000131731 Ano1 protein_coding Interval_106072 chr3 92510726 92511322 + 0 NA Intergenic Intergenic -10531 ENSMUSG00000045566.1 ENSMUSG00000045566 ENSMUST00000062129 Sprr4 protein_coding Interval_71000 chr17 17082951 17083601 + 0 NA intron (ENSMUSG00000096696.1, intron 1 of 3) protein_coding-intron (ENSMUSG00000096696.1, intron 1 of 3) 19163 ENSMUSG00000096696.1 ENSMUSG00000096696 ENSMUST00000127027 Zfp960 protein_coding Interval_47912 chr13 94329355 94329728 + 0 NA Intergenic Intergenic 29382 ENSMUSG00000042857.3 ENSMUSG00000042857 ENSMUST00000221110 Gm9776 bidirectional_promoter_lncRNA Interval_91673 chr2 46968008 46968220 + 0 NA Intergenic Intergenic -361031 ENSMUSG00000089144.1 ENSMUSG00000089144 ENSMUST00000158519 Gm25264 snoRNA Interval_146850 chr7 53322060 53322297 + 0 NA Intergenic Intergenic 395108 ENSMUSG00000070203.1 ENSMUSG00000070203 ENSMUST00000093693 Gm22444 snRNA Interval_140296 chr6 116217275 116217539 + 0 NA intron (ENSMUSG00000024104.11, intron 4 of 24) protein_coding-intron (ENSMUSG00000024104.11, intron 5 of 30) -9414 ENSMUSG00000108030.1 ENSMUSG00000108030 ENSMUST00000203332 9530062K07Rik bidirectional_promoter_lncRNA Interval_111037 chr4 11399864 11400534 + 0 NA promoter-TSS (ENSMUSG00000081884.1) processed_pseudogene-promoter-TSS (ENSMUSG00000081884.1) -147 ENSMUSG00000081884.1 ENSMUSG00000081884 ENSMUST00000117335 Gm11821 processed_pseudogene Interval_88119 chr19 59364746 59365571 + 0 NA Intergenic Intergenic -19378 ENSMUSG00000074746.3 ENSMUSG00000074746 ENSMUST00000099274 Pdzd8 protein_coding Interval_49022 chr13 106967372 106967670 + 0 NA intron (ENSMUSG00000021693.20, intron 18 of 20) protein_coding-intron (ENSMUSG00000021693.20, intron 17 of 19) 9597 ENSMUSG00000021693.20 ENSMUSG00000021693 ENSMUST00000146395 Kif2a protein_coding Interval_120645 chr4 149868344 149868832 + 0 NA Intergenic Intergenic -35418 ENSMUSG00000086767.1 ENSMUSG00000086767 ENSMUST00000146532 Gm13070 antisense Interval_53689 chr14 60904236 60905089 + 0 NA TTS (ENSMUSG00000021993.10) protein_coding-TTS (ENSMUSG00000021993.10) 120080 ENSMUSG00000021993.10 ENSMUSG00000021993 ENSMUST00000223709 Mipep protein_coding Interval_86678 chr19 42503823 42504076 + 0 NA Intergenic Intergenic 59159 ENSMUSG00000090117.7 ENSMUSG00000090117 ENSMUST00000162829 Gm16541 antisense Interval_91556 chr2 43236191 43236555 + 0 NA Intergenic Intergenic 283025 ENSMUSG00000080994.2 ENSMUSG00000080994 ENSMUST00000119418 Gm13464 processed_pseudogene Interval_170873 chr9 111438668 111440066 + 0 NA intron (ENSMUSG00000032500.10, intron 1 of 4) protein_coding-intron (ENSMUSG00000032500.10, intron 1 of 4) 286 ENSMUSG00000032500.10 ENSMUSG00000032500 ENSMUST00000111879 Dclk3 protein_coding Interval_84050 chr19 6962232 6963034 + 0 NA exon (ENSMUSG00000024960.9, exon 1 of 1) protein_coding-exon (ENSMUSG00000024960.9, exon 1 of 1) -4920 ENSMUSG00000024960.9 ENSMUSG00000024960 ENSMUST00000237446 Plcb3 protein_coding Interval_92855 chr2 66773593 66773811 + 0 NA intron (ENSMUSG00000034810.7, intron 1 of 24) protein_coding-intron (ENSMUSG00000034810.7, intron 1 of 24) 11212 ENSMUSG00000034810.7 ENSMUSG00000034810 ENSMUST00000042792 Scn7a protein_coding Interval_77998 chr18 6528655 6529589 + 0 NA Intergenic Intergenic -28008 ENSMUSG00000117425.1 ENSMUSG00000117425 ENSMUST00000234402 Gm7464 processed_pseudogene Interval_43741 chr13 35886135 35886691 + 0 NA Intergenic Intergenic -19044 ENSMUSG00000114270.1 ENSMUSG00000114270 ENSMUST00000225277 Gm48746 lincRNA Interval_135335 chr6 38404429 38404630 + 0 NA exon (ENSMUSG00000056832.14, exon 12 of 18) protein_coding-exon (ENSMUSG00000056832.14, exon 12 of 18) 8262 ENSMUSG00000089905.1 ENSMUSG00000089905 ENSMUST00000162673 Gm16563 processed_pseudogene Interval_115116 chr4 90860955 90861425 + 0 NA Intergenic Intergenic 4307 ENSMUSG00000082622.1 ENSMUSG00000082622 ENSMUST00000121223 Gm12632 processed_pseudogene Interval_13788 chr10 22172990 22174426 + 0 NA promoter-TSS (ENSMUSG00000053219.15) protein_coding-promoter-TSS (ENSMUSG00000053219.15) 15139 ENSMUSG00000053219.15 ENSMUSG00000053219 ENSMUST00000178026 Raet1e protein_coding Interval_159296 chr8 92930098 92930283 + 0 NA Intergenic Intergenic -17001 ENSMUSG00000080613.1 ENSMUSG00000080613 ENSMUST00000116963 Gm22151 miRNA Interval_96612 chr2 126522492 126523954 + 0 NA Intergenic Intergenic -23234 ENSMUSG00000060131.11 ENSMUSG00000060131 ENSMUST00000129187 Atp8b4 protein_coding Interval_133018 chr5 149319817 149321341 + 0 NA Intergenic Intergenic -32711 ENSMUSG00000107317.1 ENSMUSG00000107317 ENSMUST00000200934 Gm19719 antisense Interval_84517 chr19 12043112 12043348 + 0 NA Intergenic Intergenic -1913 ENSMUSG00000067529.2 ENSMUSG00000067529 ENSMUST00000087831 Olfr1423 protein_coding Interval_117877 chr4 126839822 126841500 + 0 NA TTS (ENSMUSG00000028830.14) protein_coding-TTS (ENSMUSG00000028830.14) 5382 ENSMUSG00000028830.14 ENSMUSG00000028830 ENSMUST00000125225 AU040320 protein_coding Interval_76649 chr17 83124015 83124411 + 0 NA Intergenic Intergenic -3472 ENSMUSG00000117509.1 ENSMUSG00000117509 ENSMUST00000234289 Gm46606 lincRNA Interval_3979 chr1 65329800 65330196 + 0 NA intron (ENSMUSG00000025946.13, intron 2 of 5) protein_coding-intron (ENSMUSG00000025946.13, intron 2 of 12) 47942 ENSMUSG00000025946.13 ENSMUSG00000025946 ENSMUST00000027083 Pth2r protein_coding Interval_163188 chr9 17557296 17558453 + 0 NA Intergenic Intergenic 33895 ENSMUSG00000111534.1 ENSMUSG00000111534 ENSMUST00000214184 Gm48846 processed_pseudogene Interval_160030 chr8 105899964 105901105 + 0 NA promoter-TSS (ENSMUSG00000048310.8) protein_coding-promoter-TSS (ENSMUSG00000048310.8) 93 ENSMUSG00000048310.8 ENSMUSG00000048310 ENSMUST00000049699 Pskh1 protein_coding Interval_23304 chr11 21278762 21279251 + 0 NA intron (ENSMUSG00000020128.15, intron 1 of 2) protein_coding-intron (ENSMUSG00000020128.15, intron 7 of 22) 1218 ENSMUSG00000081868.1 ENSMUSG00000081868 ENSMUST00000118219 Gm12039 processed_pseudogene Interval_110223 chr3 154547584 154548654 + 0 NA Intergenic Intergenic 48979 ENSMUSG00000047583.9 ENSMUSG00000047583 ENSMUST00000122976 Tyw3 protein_coding Interval_17769 chr10 79976165 79978752 + 0 NA TTS (ENSMUSG00000035745.9) protein_coding-TTS (ENSMUSG00000035745.9) 1315 ENSMUSG00000013858.14 ENSMUSG00000013858 ENSMUST00000124889 Tmem259 protein_coding Interval_94923 chr2 101796284 101798071 + 0 NA intron (ENSMUSG00000032841.15, intron 1 of 3) protein_coding-intron (ENSMUSG00000032841.15, intron 1 of 8) 530 ENSMUSG00000032841.15 ENSMUSG00000032841 ENSMUST00000127358 Prr5l protein_coding Interval_148098 chr7 79204134 79205375 + 0 NA Intergenic Intergenic -56523 ENSMUSG00000030605.15 ENSMUSG00000030605 ENSMUST00000206844 Mfge8 protein_coding Interval_157266 chr8 68813363 68813791 + 0 NA exon (ENSMUSG00000031864.16, exon 12 of 17) protein_coding-exon (ENSMUSG00000031864.16, exon 12 of 17) 14710 ENSMUSG00000081745.1 ENSMUSG00000081745 ENSMUST00000121595 Gm15549 processed_pseudogene Interval_76795 chr17 84112020 84114448 + 0 NA Intergenic Intergenic 26607 ENSMUSG00000117485.1 ENSMUSG00000117485 ENSMUST00000234394 Gm19696 lincRNA Interval_10030 chr1 165210314 165211654 + 0 NA Intergenic Intergenic -16667 ENSMUSG00000040848.11 ENSMUSG00000040848 ENSMUST00000192565 Sft2d2 protein_coding Interval_14905 chr10 40985282 40985638 + 0 NA Intergenic Intergenic -49735 ENSMUSG00000111098.1 ENSMUSG00000111098 ENSMUST00000214667 Gm48057 lincRNA Interval_112514 chr4 41722824 41723581 + 0 NA promoter-TSS (ENSMUSG00000028447.11) protein_coding-promoter-TSS (ENSMUSG00000028447.11) -39 ENSMUSG00000028447.11 ENSMUSG00000028447 ENSMUST00000147120 Dctn3 protein_coding Interval_90422 chr2 30350893 30351565 + 0 NA intron (ENSMUSG00000026860.16, intron 1 of 7) protein_coding-intron (ENSMUSG00000026860.16, intron 3 of 10) 8060 ENSMUSG00000026860.16 ENSMUSG00000026860 ENSMUST00000139963 Sh3glb2 protein_coding Interval_81679 chr18 63298904 63299630 + 0 NA intron (ENSMUSG00000041482.17, intron 2 of 50) protein_coding-intron (ENSMUSG00000041482.17, intron 1 of 7) 34177 ENSMUSG00000118336.1 ENSMUSG00000118336 ENSMUST00000235825 Gm50172 TEC Interval_51565 chr14 30265619 30266019 + 0 NA intron (ENSMUSG00000015968.18, intron 3 of 40) protein_coding-intron (ENSMUSG00000015968.18, intron 3 of 48) 58081 ENSMUSG00000114650.1 ENSMUSG00000114650 ENSMUST00000224405 Gm47570 processed_pseudogene Interval_86360 chr19 38968680 38969643 + 0 NA exon (ENSMUSG00000025001.11, exon 22 of 22) protein_coding-exon (ENSMUSG00000025001.11, exon 22 of 22) -7486 ENSMUSG00000114610.1 ENSMUSG00000114610 ENSMUST00000225458 Cyp2c52-ps unprocessed_pseudogene Interval_40948 chr12 110154872 110155529 + 0 NA intron (ENSMUSG00000113331.1, intron 2 of 2) lincRNA-intron (ENSMUSG00000113331.1, intron 2 of 2) 2877 ENSMUSG00000113331.1 ENSMUSG00000113331 ENSMUST00000223217 3110009F21Rik lincRNA Interval_68855 chr16 87609978 87611568 + 0 NA Intergenic Intergenic 10347 ENSMUSG00000064670.1 ENSMUSG00000064670 ENSMUST00000082736 Gm22808 snRNA Interval_115701 chr4 102656662 102656957 + 0 NA Intergenic Intergenic -80003 ENSMUSG00000077260.1 ENSMUSG00000077260 ENSMUST00000104072 Gm24869 snoRNA Interval_146987 chr7 57259919 57260383 + 0 NA intron (ENSMUSG00000055026.13, intron 3 of 3) protein_coding-intron (ENSMUSG00000055026.13, intron 3 of 3) 127037 ENSMUSG00000055026.13 ENSMUSG00000055026 ENSMUST00000171965 Gabrg3 protein_coding Interval_146312 chr7 45288753 45289065 + 0 NA TTS (ENSMUSG00000070568.12) protein_coding-TTS (ENSMUSG00000070568.12) 11396 ENSMUSG00000070568.12 ENSMUSG00000070568 ENSMUST00000210733 Slc6a21 protein_coding Interval_12162 chr1 190315993 190316621 + 0 NA Intergenic Intergenic -87338 ENSMUSG00000103644.1 ENSMUSG00000103644 ENSMUST00000193966 Gm29678 lincRNA Interval_126696 chr5 92104043 92104278 + 0 NA Intergenic Intergenic 14123 ENSMUSG00000088949.1 ENSMUSG00000088949 ENSMUST00000158324 Gm24931 rRNA Interval_92076 chr2 53020033 53020239 + 0 NA intron (ENSMUSG00000036053.17, intron 2 of 26) protein_coding-intron (ENSMUSG00000036053.17, intron 2 of 26) 162276 ENSMUSG00000036053.17 ENSMUSG00000036053 ENSMUST00000050719 Fmnl2 protein_coding Interval_169416 chr9 97081192 97082293 + 0 NA intron (ENSMUSG00000032449.13, intron 2 of 2) protein_coding-intron (ENSMUSG00000032449.13, intron 1 of 2) -3584 ENSMUSG00000084911.1 ENSMUSG00000084911 ENSMUST00000125071 Gm16185 antisense Interval_14272 chr10 30199685 30200763 + 0 NA intron (ENSMUSG00000075266.5, intron 1 of 1) protein_coding-intron (ENSMUSG00000075266.5, intron 1 of 2) 268 ENSMUSG00000075266.5 ENSMUSG00000075266 ENSMUST00000099985 Cenpw protein_coding Interval_77253 chr17 87593674 87594346 + 0 NA Intergenic Intergenic -22356 ENSMUSG00000117414.1 ENSMUSG00000117414 ENSMUST00000234992 Gm46587 lincRNA Interval_171052 chr9 114009494 114011496 + 0 NA intron (ENSMUSG00000032507.15, intron 2 of 15) protein_coding-intron (ENSMUSG00000032507.15, intron 2 of 14) 16231 ENSMUSG00000032507.15 ENSMUSG00000032507 ENSMUST00000141832 Fbxl2 protein_coding Interval_80467 chr18 42423590 42423816 + 0 NA Intergenic Intergenic -17316 ENSMUSG00000056849.6 ENSMUSG00000056849 ENSMUST00000080097 Gm16415 processed_pseudogene Interval_70687 chr17 13472084 13472875 + 0 NA Intergenic Intergenic -28475 ENSMUSG00000090211.3 ENSMUSG00000090211 ENSMUST00000160626 Gm16050 lincRNA Interval_104413 chr3 65429097 65430511 + 0 NA Intergenic Intergenic 36467 ENSMUSG00000048916.7 ENSMUSG00000048916 ENSMUST00000131852 Gm5540 processed_pseudogene Interval_81284 chr18 57375945 57376735 + 0 NA intron (ENSMUSG00000024594.9, intron 2 of 4) protein_coding-intron (ENSMUSG00000024594.9, intron 6 of 8) 21450 ENSMUSG00000024594.9 ENSMUSG00000024594 ENSMUST00000236709 Prrc1 protein_coding Interval_86861 chr19 44431944 44432489 + 0 NA intron (ENSMUSG00000118076.1, intron 3 of 3) lincRNA-intron (ENSMUSG00000118076.1, intron 3 of 3) 12606 ENSMUSG00000118076.1 ENSMUSG00000118076 ENSMUST00000237516 Gm50337 lincRNA Interval_163600 chr9 22447132 22447429 + 0 NA intron (ENSMUSG00000032239.10, intron 5 of 5) protein_coding-intron (ENSMUSG00000032239.10, intron 5 of 5) -7010 ENSMUSG00000091159.1 ENSMUSG00000091159 ENSMUST00000168332 Gm17545 protein_coding Interval_59753 chr15 59047869 59048201 + 0 NA intron (ENSMUSG00000022353.10, intron 3 of 14) protein_coding-intron (ENSMUSG00000022353.10, intron 3 of 14) 33970 ENSMUSG00000022353.10 ENSMUSG00000022353 ENSMUST00000227797 Mtss1 protein_coding Interval_11624 chr1 183419083 183419640 + 0 NA TTS (ENSMUSG00000053461.9) protein_coding-TTS (ENSMUSG00000053461.9) 1146 ENSMUSG00000053461.9 ENSMUSG00000053461 ENSMUST00000192527 Hhipl2 protein_coding Interval_92618 chr2 61577730 61578028 + 0 NA promoter-TSS (ENSMUSG00000064289.15) protein_coding-promoter-TSS (ENSMUSG00000064289.15) -65952 ENSMUSG00000064289.15 ENSMUSG00000064289 ENSMUST00000154693 Tank protein_coding Interval_136276 chr6 52470894 52471185 + 0 NA Intergenic Intergenic -21412 ENSMUSG00000107895.1 ENSMUSG00000107895 ENSMUST00000203771 1700094M24Rik lincRNA Interval_173134 chrX 73227915 73229428 + 0 NA exon (ENSMUSG00000078317.6, exon 1 of 1) protein_coding-exon (ENSMUSG00000078317.6, exon 1 of 1) 380 ENSMUSG00000078317.6 ENSMUSG00000078317 ENSMUST00000105111 F8a protein_coding Interval_64780 chr16 15658033 15659423 + 0 NA intron (ENSMUSG00000022672.8, intron 10 of 21) protein_coding-intron (ENSMUSG00000022672.8, intron 10 of 85) 20862 ENSMUSG00000022672.8 ENSMUSG00000022672 ENSMUST00000023352 Prkdc protein_coding Interval_114649 chr4 83449765 83451637 + 0 NA intron (ENSMUSG00000028483.13, intron 7 of 11) protein_coding-intron (ENSMUSG00000028483.13, intron 7 of 8) -3253 ENSMUSG00000028483.13 ENSMUSG00000028483 ENSMUST00000130676 Snapc3 protein_coding Interval_108874 chr3 132893841 132894122 + 0 NA intron (ENSMUSG00000040998.18, intron 2 of 2) protein_coding-intron (ENSMUSG00000040998.18, intron 9 of 12) 12378 ENSMUSG00000040998.18 ENSMUSG00000040998 ENSMUST00000132732 Npnt protein_coding Interval_69373 chr16 92544247 92544649 + 0 NA Intergenic Intergenic 8695 ENSMUSG00000116709.1 ENSMUSG00000116709 ENSMUST00000232213 Gm49722 lincRNA Interval_106941 chr3 102081683 102082523 + 0 NA Intergenic Intergenic -4443 ENSMUSG00000027861.13 ENSMUSG00000027861 ENSMUST00000159833 Casq2 protein_coding Interval_60286 chr15 72287479 72287819 + 0 NA TTS (ENSMUSG00000116068.1) lincRNA-TTS (ENSMUSG00000116068.1) -32193 ENSMUSG00000095129.1 ENSMUSG00000095129 ENSMUST00000178482 Gm23217 snRNA Interval_1199 chr1 16942242 16942510 + 0 NA intron (ENSMUSG00000101640.1, intron 1 of 2) antisense-intron (ENSMUSG00000101640.1, intron 1 of 2) 11406 ENSMUSG00000104133.1 ENSMUSG00000104133 ENSMUST00000194790 4921511E07Rik TEC Interval_106906 chr3 101757319 101757837 + 0 NA Intergenic Intergenic 9454 ENSMUSG00000105642.1 ENSMUSG00000105642 ENSMUST00000199434 Gm43134 lincRNA Interval_92065 chr2 52957957 52959700 + 0 NA intron (ENSMUSG00000036053.17, intron 1 of 26) protein_coding-intron (ENSMUSG00000036053.17, intron 1 of 26) 100968 ENSMUSG00000036053.17 ENSMUSG00000036053 ENSMUST00000050719 Fmnl2 protein_coding Interval_127303 chr5 102369443 102370065 + 0 NA Intergenic Intergenic -46449 ENSMUSG00000106295.1 ENSMUSG00000106295 ENSMUST00000197280 Gm42932 processed_pseudogene Interval_119166 chr4 135945926 135946964 + 0 NA promoter-TSS (ENSMUSG00000028672.13) protein_coding-promoter-TSS (ENSMUSG00000028672.13) -2085 ENSMUSG00000028672.13 ENSMUSG00000028672 ENSMUST00000135644 Hmgcl protein_coding Interval_159265 chr8 92591492 92592329 + 0 NA Intergenic Intergenic -82916 ENSMUSG00000031738.14 ENSMUSG00000031738 ENSMUST00000167261 Irx6 protein_coding Interval_116572 chr4 115793117 115793584 + 0 NA intron (ENSMUSG00000028710.18, intron 4 of 8) protein_coding-intron (ENSMUSG00000028710.18, intron 4 of 8) 8366 ENSMUSG00000028710.18 ENSMUSG00000028710 ENSMUST00000137401 Atpaf1 protein_coding Interval_66199 chr16 32282778 32283196 + 0 NA intron (ENSMUSG00000014074.17, intron 2 of 5) protein_coding-intron (ENSMUSG00000014074.17, intron 2 of 5) 5526 ENSMUSG00000014074.17 ENSMUSG00000014074 ENSMUST00000171474 Rnf168 protein_coding Interval_211 KQ030492.1 2894 4382 + 0 NA NA NA NA NA Interval_19999 chr10 111854227 111854938 + 0 NA TTS (ENSMUSG00000112533.1) lincRNA-TTS (ENSMUSG00000112533.1) 19794 ENSMUSG00000112533.1 ENSMUSG00000112533 ENSMUST00000220339 Gm20758 lincRNA Interval_130424 chr5 127502760 127503137 + 0 NA intron (ENSMUSG00000034324.16, intron 3 of 8) protein_coding-intron (ENSMUSG00000034324.16, intron 3 of 8) -50306 ENSMUSG00000034324.16 ENSMUSG00000034324 ENSMUST00000145748 Tmem132c protein_coding Interval_15660 chr10 53234693 53235914 + 0 NA exon (ENSMUSG00000112835.1, exon 1 of 3) lincRNA-exon (ENSMUSG00000112835.1, exon 1 of 3) 116 ENSMUSG00000112835.1 ENSMUSG00000112835 ENSMUST00000219101 Gm36173 lincRNA Interval_128402 chr5 113127244 113128183 + 0 NA intron (ENSMUSG00000051339.10, intron 6 of 12) protein_coding-intron (ENSMUSG00000051339.10, intron 1 of 7) -8249 ENSMUSG00000104576.1 ENSMUSG00000104576 ENSMUST00000197638 F830115B05Rik TEC Interval_48769 chr13 102957548 102958586 + 0 NA exon (ENSMUSG00000034751.17, exon 1 of 28) protein_coding-exon (ENSMUSG00000034751.17, exon 1 of 28) 138778 ENSMUSG00000034751.17 ENSMUSG00000034751 ENSMUST00000187024 Mast4 protein_coding Interval_156306 chr8 47282417 47282673 + 0 NA intron (ENSMUSG00000038143.16, intron 2 of 5) protein_coding-intron (ENSMUSG00000038143.16, intron 1 of 3) -55379 ENSMUSG00000109606.1 ENSMUSG00000109606 ENSMUST00000211539 Gm45537 TEC Interval_50433 chr14 13116573 13117390 + 0 NA Intergenic Intergenic 53737 ENSMUSG00000051729.12 ENSMUSG00000051729 ENSMUST00000140967 Gm5087 processed_transcript Interval_145237 chr7 30844067 30845800 + 0 NA Intergenic Intergenic 11234 ENSMUSG00000019429.7 ENSMUSG00000019429 ENSMUST00000185748 Ffar3 protein_coding Interval_16335 chr10 62304155 62305076 + 0 NA intron (ENSMUSG00000037012.18, intron 1 of 2) protein_coding-intron (ENSMUSG00000037012.18, intron 4 of 19) -14286 ENSMUSG00000037012.18 ENSMUSG00000037012 ENSMUST00000149534 Hk1 protein_coding Interval_98511 chr2 152891510 152892771 + 0 NA exon (ENSMUSG00000027469.16, exon 17 of 18) protein_coding-exon (ENSMUSG00000027469.16, exon 17 of 18) -19212 ENSMUSG00000027470.9 ENSMUSG00000027470 ENSMUST00000028970 Mylk2 protein_coding Interval_115835 chr4 105164569 105165598 + 0 NA intron (ENSMUSG00000028517.8, intron 1 of 5) protein_coding-intron (ENSMUSG00000028517.8, intron 1 of 5) 7736 ENSMUSG00000028517.8 ENSMUSG00000028517 ENSMUST00000064139 Plpp3 protein_coding Interval_143184 chr7 4310213 4311464 + 0 NA Intergenic Intergenic 9490 ENSMUSG00000108743.1 ENSMUSG00000108743 ENSMUST00000205425 Gm44881 processed_pseudogene Interval_108558 chr3 128841676 128841940 + 0 NA intron (ENSMUSG00000106245.1, intron 4 of 4) lincRNA-intron (ENSMUSG00000106245.1, intron 4 of 4) 1972 ENSMUSG00000106029.1 ENSMUSG00000106029 ENSMUST00000199349 Gm4410 transcribed_processed_pseudogene Interval_22771 chr11 15192978 15193819 + 0 NA Intergenic Intergenic 144240 ENSMUSG00000084183.1 ENSMUSG00000084183 ENSMUST00000121361 Gm12009 processed_pseudogene Interval_139801 chr6 108816676 108817521 + 0 NA intron (ENSMUSG00000030105.8, intron 4 of 6) protein_coding-intron (ENSMUSG00000030105.8, intron 4 of 6) -11543 ENSMUSG00000030104.9 ENSMUSG00000030104 ENSMUST00000203302 Edem1 protein_coding Interval_1822 chr1 34017797 34018094 + 0 NA intron (ENSMUSG00000026131.20, intron 1 of 97) protein_coding-intron (ENSMUSG00000026131.20, intron 1 of 97) -14155 ENSMUSG00000103364.1 ENSMUSG00000103364 ENSMUST00000194178 Gm38157 TEC Interval_54829 chr14 75640582 75642169 + 0 NA promoter-TSS (ENSMUSG00000022002.2) protein_coding-promoter-TSS (ENSMUSG00000022002.2) -874 ENSMUSG00000022002.2 ENSMUSG00000022002 ENSMUST00000022579 Erich6b protein_coding Interval_119612 chr4 138717432 138717784 + 0 NA TTS (ENSMUSG00000043621.13) protein_coding-TTS (ENSMUSG00000043621.13) 7613 ENSMUSG00000043621.13 ENSMUSG00000043621 ENSMUST00000135156 Ubxn10 protein_coding Interval_104985 chr3 79510868 79511233 + 0 NA intron (ENSMUSG00000061175.12, intron 5 of 12) protein_coding-intron (ENSMUSG00000061175.12, intron 5 of 16) 20826 ENSMUSG00000061175.12 ENSMUSG00000061175 ENSMUST00000139171 Fnip2 protein_coding Interval_79394 chr18 31622132 31622965 + 0 NA Intergenic Intergenic -11823 ENSMUSG00000024260.14 ENSMUSG00000024260 ENSMUST00000234772 Sap130 protein_coding Interval_166120 chr9 56860947 56861202 + 0 NA intron (ENSMUSG00000045620.7, intron 1 of 5) protein_coding-intron (ENSMUSG00000045620.7, intron 1 of 5) 3605 ENSMUSG00000045620.7 ENSMUSG00000045620 ENSMUST00000215694 Odf3l1 protein_coding Interval_136821 chr6 60986202 60986547 + 0 NA intron (ENSMUSG00000054641.10, intron 6 of 7) protein_coding-intron (ENSMUSG00000054641.10, intron 6 of 7) 31362 ENSMUSG00000108098.1 ENSMUSG00000108098 ENSMUST00000204855 Gm18838 processed_pseudogene Interval_113200 chr4 49586139 49586459 + 0 NA TTS (ENSMUSG00000039611.2) protein_coding-TTS (ENSMUSG00000039611.2) 7591 ENSMUSG00000039611.2 ENSMUSG00000039611 ENSMUST00000151542 Tmem246 protein_coding Interval_164913 chr9 43045656 43046412 + 0 NA intron (ENSMUSG00000059495.14, intron 1 of 4) protein_coding-intron (ENSMUSG00000059495.14, intron 1 of 41) -19374 ENSMUSG00000059495.14 ENSMUSG00000059495 ENSMUST00000214175 Arhgef12 protein_coding Interval_152172 chr7 130383305 130383514 + 0 NA intron (ENSMUSG00000030849.18, intron 2 of 6) protein_coding-intron (ENSMUSG00000030849.18, intron 2 of 6) -29047 ENSMUSG00000082988.3 ENSMUSG00000082988 ENSMUST00000121836 Gm5903 processed_pseudogene Interval_15451 chr10 46819216 46820821 + 0 NA Intergenic Intergenic 18489 ENSMUSG00000065718.1 ENSMUSG00000065718 ENSMUST00000083784 Gm25650 snRNA Interval_115010 chr4 88438153 88439327 + 0 NA intron (ENSMUSG00000028497.12, intron 1 of 6) protein_coding-intron (ENSMUSG00000028497.12, intron 1 of 6) 188 ENSMUSG00000028497.12 ENSMUSG00000028497 ENSMUST00000030221 Hacd4 protein_coding Interval_18885 chr10 92400630 92401364 + 0 NA promoter-TSS (ENSMUSG00000110794.1) lincRNA-promoter-TSS (ENSMUSG00000110794.1) -17 ENSMUSG00000110794.1 ENSMUSG00000110794 ENSMUST00000214657 4930401A07Rik lincRNA Interval_54625 chr14 72377174 72377407 + 0 NA Intergenic Intergenic 114548 ENSMUSG00000109446.1 ENSMUSG00000109446 ENSMUST00000208955 Gm9195 protein_coding Interval_78573 chr18 14844280 14844476 + 0 NA intron (ENSMUSG00000054321.7, intron 12 of 14) protein_coding-intron (ENSMUSG00000054321.7, intron 12 of 14) 13710 ENSMUSG00000117530.1 ENSMUSG00000117530 ENSMUST00000234669 Gm21055 processed_pseudogene Interval_34040 chr11 120148501 120148749 + 0 NA intron (ENSMUSG00000061306.16, intron 1 of 16) protein_coding-intron (ENSMUSG00000061306.16, intron 1 of 15) -1937 ENSMUSG00000085636.1 ENSMUSG00000085636 ENSMUST00000140273 Gm11769 processed_transcript Interval_169103 chr9 92520658 92520835 + 0 NA Intergenic Intergenic 6962 ENSMUSG00000077400.1 ENSMUSG00000077400 ENSMUST00000104212 Gm25417 snoRNA Interval_127361 chr5 103387608 103388238 + 0 NA Intergenic Intergenic -31225 ENSMUSG00000104684.1 ENSMUSG00000104684 ENSMUST00000200007 5430427N15Rik lincRNA Interval_65491 chr16 22766585 22767762 + 0 NA Intergenic Intergenic 44404 ENSMUSG00000033501.5 ENSMUSG00000033501 ENSMUST00000040592 Crygs protein_coding Interval_72366 chr17 29436817 29437566 + 0 NA promoter-TSS (ENSMUSG00000117575.1) processed_transcript-promoter-TSS (ENSMUSG00000117575.1) -2434 ENSMUSG00000117575.1 ENSMUSG00000117575 ENSMUST00000234181 Gm36486 processed_transcript Interval_155608 chr8 35120428 35120824 + 0 NA Intergenic Intergenic 12906 ENSMUSG00000097106.1 ENSMUSG00000097106 ENSMUST00000180440 Rpl31-ps23 processed_pseudogene Interval_71598 chr17 24765711 24765921 + 0 NA Intergenic Intergenic 12800 ENSMUSG00000039628.9 ENSMUSG00000039628 ENSMUST00000234202 Hs3st6 protein_coding Interval_38188 chr12 76266746 76267592 + 0 NA intron (ENSMUSG00000021048.7, intron 1 of 26) protein_coding-intron (ENSMUSG00000021048.7, intron 1 of 27) 10547 ENSMUSG00000112138.1 ENSMUSG00000112138 ENSMUST00000218456 Gm47526 processed_pseudogene Interval_163040 chr9 14731009 14731842 + 0 NA intron (ENSMUSG00000036912.18, intron 4 of 19) protein_coding-intron (ENSMUSG00000036912.18, intron 4 of 18) -4770 ENSMUSG00000082564.1 ENSMUSG00000082564 ENSMUST00000121218 Gm15586 processed_pseudogene Interval_123147 chr5 30110771 30111969 + 0 NA intron (ENSMUSG00000044576.6, intron 2 of 5) protein_coding-intron (ENSMUSG00000044576.6, intron 2 of 5) -5284 ENSMUSG00000086815.4 ENSMUSG00000086815 ENSMUST00000127749 3110082J24Rik protein_coding Interval_99682 chr2 164170970 164171583 + 0 NA promoter-TSS (ENSMUSG00000040164.3) protein_coding-promoter-TSS (ENSMUSG00000040164.3) -163 ENSMUSG00000040164.3 ENSMUSG00000040164 ENSMUST00000045196 Kcns1 protein_coding Interval_10643 chr1 172409145 172409625 + 0 NA Intergenic Intergenic -18396 ENSMUSG00000102278.1 ENSMUSG00000102278 ENSMUST00000193540 Gm37145 TEC Interval_94666 chr2 93163163 93163626 + 0 NA Intergenic Intergenic -24154 ENSMUSG00000068735.14 ENSMUSG00000068735 ENSMUST00000143164 Trp53i11 protein_coding Interval_68717 chr16 84955191 84955924 + 0 NA intron (ENSMUSG00000022892.11, intron 13 of 13) protein_coding-intron (ENSMUSG00000022892.11, intron 15 of 15) -16657 ENSMUSG00000115518.1 ENSMUSG00000115518 ENSMUST00000227835 Gm10791 antisense Interval_87473 chr19 52745654 52745944 + 0 NA Intergenic Intergenic -177443 ENSMUSG00000117896.1 ENSMUSG00000117896 ENSMUST00000237126 AA387883 lincRNA Interval_103556 chr3 49266171 49266441 + 0 NA Intergenic Intergenic -58238 ENSMUSG00000103027.1 ENSMUSG00000103027 ENSMUST00000192779 Gm37684 processed_pseudogene Interval_70921 chr17 15991587 15992408 + 0 NA Intergenic Intergenic 146717 ENSMUSG00000116545.1 ENSMUSG00000116545 ENSMUST00000231929 Eif3s6-ps3 processed_pseudogene Interval_37690 chr12 71122848 71123699 + 0 NA TTS (ENSMUSG00000021078.5) protein_coding-TTS (ENSMUSG00000021078.5) 11803 ENSMUSG00000021078.5 ENSMUSG00000021078 ENSMUST00000221962 Tomm20l protein_coding Interval_66996 chr16 39162746 39163521 + 0 NA Intergenic Intergenic 25773 ENSMUSG00000116965.1 ENSMUSG00000116965 ENSMUST00000231748 Gm36742 lincRNA Interval_8801 chr1 151258240 151259782 + 0 NA Intergenic Intergenic 1903 ENSMUSG00000088498.1 ENSMUSG00000088498 ENSMUST00000157873 Gm24402 snRNA Interval_14866 chr10 40630905 40631278 + 0 NA promoter-TSS (ENSMUSG00000063428.8) protein_coding-promoter-TSS (ENSMUSG00000063428.8) 1014 ENSMUSG00000063428.8 ENSMUSG00000063428 ENSMUST00000214618 Ddo protein_coding Interval_19042 chr10 94013358 94013624 + 0 NA intron (ENSMUSG00000036099.16, intron 1 of 8) protein_coding-intron (ENSMUSG00000036099.16, intron 1 of 11) -14590 ENSMUSG00000111349.1 ENSMUSG00000111349 ENSMUST00000216926 Gm48191 processed_pseudogene Interval_56666 chr14 121274114 121274380 + 0 NA intron (ENSMUSG00000025555.14, intron 19 of 26) protein_coding-intron (ENSMUSG00000025555.14, intron 19 of 26) 25541 ENSMUSG00000085133.2 ENSMUSG00000085133 ENSMUST00000130256 B930095G15Rik sense_intronic Interval_24381 chr11 32808944 32809402 + 0 NA Intergenic Intergenic 15389 ENSMUSG00000020270.9 ENSMUSG00000020270 ENSMUST00000020508 Smim23 protein_coding Interval_62086 chr15 86349392 86349825 + 0 NA intron (ENSMUSG00000051864.10, intron 8 of 12) protein_coding-intron (ENSMUSG00000051864.10, intron 8 of 12) 114103 ENSMUSG00000051864.10 ENSMUSG00000051864 ENSMUST00000229242 Tbc1d22a protein_coding Interval_171380 chr9 117187591 117188062 + 0 NA intron (ENSMUSG00000039607.17, intron 1 of 13) protein_coding-intron (ENSMUSG00000039607.17, intron 1 of 12) -64710 ENSMUSG00000079669.2 ENSMUSG00000079669 ENSMUST00000172075 Gm17396 processed_transcript Interval_96058 chr2 119506912 119507393 + 0 NA Intergenic Intergenic 2077 ENSMUSG00000082369.1 ENSMUSG00000082369 ENSMUST00000119645 Gm14208 processed_pseudogene Interval_106114 chr3 93308071 93308307 + 0 NA exon (ENSMUSG00000103273.1, exon 1 of 1) TEC-exon (ENSMUSG00000103273.1, exon 1 of 1) 1721 ENSMUSG00000103273.1 ENSMUSG00000103273 ENSMUST00000192925 Gm37913 TEC Interval_139387 chr6 99715017 99715830 + 0 NA intron (ENSMUSG00000030069.15, intron 2 of 3) protein_coding-intron (ENSMUSG00000030069.15, intron 1 of 1) -10348 ENSMUSG00000097548.1 ENSMUSG00000097548 ENSMUST00000180406 Gm26748 antisense Interval_142486 chr6 142785252 142785780 + 0 NA TTS (ENSMUSG00000048473.15) protein_coding-TTS (ENSMUSG00000048473.15) 18986 ENSMUSG00000048473.15 ENSMUSG00000048473 ENSMUST00000111768 Sult6b2 protein_coding Interval_51765 chr14 32061029 32061932 + 0 NA exon (ENSMUSG00000021903.11, exon 10 of 10) protein_coding-exon (ENSMUSG00000021903.11, exon 10 of 10) 24212 ENSMUSG00000021905.14 ENSMUSG00000021905 ENSMUST00000112000 Dph3 protein_coding Interval_34100 chr11 120646990 120648554 + 0 NA promoter-TSS (ENSMUSG00000025141.3) protein_coding-promoter-TSS (ENSMUSG00000025141.3) 102 ENSMUSG00000084822.1 ENSMUSG00000084822 ENSMUST00000126642 Myadml2os antisense Interval_52189 chr14 39638515 39639485 + 0 NA Intergenic Intergenic -16663 ENSMUSG00000101261.1 ENSMUSG00000101261 ENSMUST00000185680 1700109I08Rik lincRNA Interval_9352 chr1 156519112 156519351 + 0 NA Intergenic Intergenic -4781 ENSMUSG00000101523.2 ENSMUSG00000101523 ENSMUST00000190422 Csnk2a3 processed_pseudogene Interval_27416 chr11 67488302 67488574 + 0 NA intron (ENSMUSG00000033066.16, intron 1 of 6) protein_coding-intron (ENSMUSG00000033066.16, intron 1 of 13) 89028 ENSMUSG00000087058.1 ENSMUSG00000087058 ENSMUST00000152963 Gm12301 antisense Interval_174699 chrX 163355115 163355688 + 0 NA Intergenic Intergenic -28032 ENSMUSG00000082970.1 ENSMUSG00000082970 ENSMUST00000122155 Gm15214 processed_pseudogene Interval_168569 chr9 83648523 83649023 + 0 NA Intergenic Intergenic 38752 ENSMUSG00000111820.1 ENSMUSG00000111820 ENSMUST00000214393 Gm36120 lincRNA Interval_26924 chr11 61601470 61602072 + 0 NA Intergenic Intergenic -22084 ENSMUSG00000001036.17 ENSMUSG00000001036 ENSMUST00000137525 Epn2 protein_coding Interval_82810 chr18 77156671 77158137 + 0 NA Intergenic Intergenic 28959 ENSMUSG00000073532.3 ENSMUSG00000073532 ENSMUST00000097520 Gm7276 bidirectional_promoter_lncRNA Interval_104188 chr3 60066401 60066782 + 0 NA Intergenic Intergenic -15311 ENSMUSG00000027762.6 ENSMUSG00000027762 ENSMUST00000195544 Sucnr1 protein_coding Interval_159557 chr8 95442648 95442931 + 0 NA Intergenic Intergenic -7945 ENSMUSG00000031796.7 ENSMUSG00000031796 ENSMUST00000212131 Cfap20 protein_coding Interval_123825 chr5 35775807 35776071 + 0 NA intron (ENSMUSG00000029095.17, intron 1 of 21) protein_coding-intron (ENSMUSG00000029095.17, intron 1 of 19) -35952 ENSMUSG00000036553.16 ENSMUSG00000036553 ENSMUST00000154118 Sh3tc1 protein_coding Interval_38333 chr12 77335672 77337975 + 0 NA intron (ENSMUSG00000021065.16, intron 4 of 7) protein_coding-intron (ENSMUSG00000021065.16, intron 4 of 11) -52041 ENSMUSG00000021065.16 ENSMUSG00000021065 ENSMUST00000218851 Fut8 protein_coding Interval_22999 chr11 18696047 18696216 + 0 NA intron (ENSMUSG00000085806.1, intron 3 of 6) lincRNA-intron (ENSMUSG00000085806.1, intron 3 of 6) 14091 ENSMUSG00000085806.1 ENSMUSG00000085806 ENSMUST00000145182 Gm12023 lincRNA Interval_102481 chr3 27118163 27118409 + 0 NA promoter-TSS (ENSMUSG00000027699.19) protein_coding-promoter-TSS (ENSMUSG00000027699.19) 9304 ENSMUSG00000087742.1 ENSMUSG00000087742 ENSMUST00000157117 Gm25152 snoRNA Interval_106498 chr3 96707916 96708844 + 0 NA exon (ENSMUSG00000028100.11, exon 1 of 8) protein_coding-exon (ENSMUSG00000028100.11, exon 1 of 8) 167 ENSMUSG00000028100.11 ENSMUSG00000028100 ENSMUST00000029742 Nudt17 protein_coding Interval_110599 chr4 4465202 4465832 + 0 NA Intergenic Intergenic 63202 ENSMUSG00000085155.3 ENSMUSG00000085155 ENSMUST00000136880 Gm11780 processed_pseudogene Interval_173934 chrX 113184661 113185895 + 0 NA intron (ENSMUSG00000025531.14, intron 1 of 12) protein_coding-intron (ENSMUSG00000025531.14, intron 1 of 14) 42042 ENSMUSG00000081831.1 ENSMUSG00000081831 ENSMUST00000121476 Gm7405 processed_pseudogene Interval_16463 chr10 63008160 63008374 + 0 NA TTS (ENSMUSG00000020070.18) protein_coding-TTS (ENSMUSG00000020070.18) 9488 ENSMUSG00000084985.1 ENSMUSG00000084985 ENSMUST00000129470 Gm16135 antisense Interval_168862 chr9 88189852 88190245 + 0 NA Intergenic Intergenic 44079 ENSMUSG00000102075.2 ENSMUSG00000102075 ENSMUST00000189012 Gm5368 processed_pseudogene Interval_61199 chr15 79931594 79935052 + 0 NA promoter-TSS (ENSMUSG00000053411.16) protein_coding-promoter-TSS (ENSMUSG00000053411.16) 507 ENSMUSG00000053411.16 ENSMUSG00000053411 ENSMUST00000177061 Cbx7 protein_coding Interval_128218 chr5 111810131 111810590 + 0 NA Intergenic Intergenic 16973 ENSMUSG00000105376.4 ENSMUSG00000105376 ENSMUST00000200641 Gm36535 lincRNA Interval_55688 chr14 99052112 99052604 + 0 NA intron (ENSMUSG00000022070.7, intron 3 of 6) protein_coding-intron (ENSMUSG00000022070.7, intron 3 of 11) 5904 ENSMUSG00000022070.7 ENSMUSG00000022070 ENSMUST00000227128 Bora protein_coding Interval_3016 chr1 52225593 52226143 + 0 NA intron (ENSMUSG00000026103.14, intron 1 of 3) protein_coding-intron (ENSMUSG00000026103.14, intron 1 of 14) -34959 ENSMUSG00000026103.14 ENSMUSG00000026103 ENSMUST00000142976 Gls protein_coding Interval_92898 chr2 68297331 68299226 + 0 NA intron (ENSMUSG00000027030.15, intron 7 of 10) protein_coding-intron (ENSMUSG00000027030.15, intron 14 of 17) 88403 ENSMUSG00000027030.15 ENSMUSG00000027030 ENSMUST00000149581 Stk39 protein_coding Interval_69837 chr16 97315191 97315753 + 0 NA Intergenic Intergenic -89797 ENSMUSG00000116686.1 ENSMUSG00000116686 ENSMUST00000232315 Gm49681 processed_pseudogene Interval_128772 chr5 115174089 115174862 + 0 NA intron (ENSMUSG00000029544.16, intron 3 of 4) protein_coding-intron (ENSMUSG00000029544.16, intron 4 of 6) 9669 ENSMUSG00000029544.16 ENSMUSG00000029544 ENSMUST00000201900 Cabp1 protein_coding Interval_49431 chr13 111938787 111939613 + 0 NA Intergenic Intergenic -52266 ENSMUSG00000086402.1 ENSMUSG00000086402 ENSMUST00000142621 Gm15322 lincRNA Interval_56833 chr14 122331646 122332838 + 0 NA intron (ENSMUSG00000025545.10, intron 2 of 7) protein_coding-intron (ENSMUSG00000025545.10, intron 2 of 7) 55918 ENSMUSG00000095311.1 ENSMUSG00000095311 ENSMUST00000175481 Gm25464 snRNA Interval_40664 chr12 106615670 106616221 + 0 NA Intergenic Intergenic 57195 ENSMUSG00000091583.1 ENSMUSG00000091583 ENSMUST00000146663 Gm17033 lincRNA Interval_46562 chr13 67194226 67195206 + 0 NA intron (ENSMUSG00000051037.15, intron 1 of 2) protein_coding-intron (ENSMUSG00000051037.15, intron 1 of 2) 210 ENSMUSG00000051037.15 ENSMUSG00000051037 ENSMUST00000117110 Zfp455 protein_coding Interval_145711 chr7 37594380 37595094 + 0 NA intron (ENSMUSG00000043456.17, intron 3 of 3) protein_coding-intron (ENSMUSG00000043456.17, intron 3 of 5) -26347 ENSMUSG00000043456.17 ENSMUSG00000043456 ENSMUST00000206332 Zfp536 protein_coding Interval_124313 chr5 43853201 43853487 + 0 NA Intergenic Intergenic -15516 ENSMUSG00000029084.5 ENSMUSG00000029084 ENSMUST00000196600 Cd38 protein_coding Interval_92347 chr2 59179241 59180282 + 0 NA intron (ENSMUSG00000026991.20, intron 1 of 4) protein_coding-intron (ENSMUSG00000026991.20, intron 1 of 21) 17834 ENSMUSG00000026991.20 ENSMUSG00000026991 ENSMUST00000124127 Pkp4 protein_coding Interval_54347 chr14 67837849 67838286 + 0 NA intron (ENSMUSG00000044447.5, intron 9 of 17) protein_coding-intron (ENSMUSG00000044447.5, intron 9 of 51) 21678 ENSMUSG00000098866.1 ENSMUSG00000098866 ENSMUST00000183732 Mir6539 miRNA Interval_88212 chr19 60712313 60713442 + 0 NA Intergenic Intergenic -43110 ENSMUSG00000072437.4 ENSMUSG00000072437 ENSMUST00000088237 Nanos1 protein_coding Interval_28002 chr11 72103198 72103823 + 0 NA intron (ENSMUSG00000040543.16, intron 3 of 7) protein_coding-intron (ENSMUSG00000040543.16, intron 3 of 19) 32268 ENSMUSG00000040543.16 ENSMUSG00000040543 ENSMUST00000142471 Pitpnm3 protein_coding Interval_98945 chr2 156256706 156257513 + 0 NA intron (ENSMUSG00000038116.16, intron 3 of 16) protein_coding-intron (ENSMUSG00000038116.16, intron 4 of 17) 34229 ENSMUSG00000038116.16 ENSMUSG00000038116 ENSMUST00000122814 Phf20 protein_coding Interval_19727 chr10 108331573 108333406 + 0 NA promoter-TSS (ENSMUSG00000035873.8) protein_coding-promoter-TSS (ENSMUSG00000035873.8) -328 ENSMUSG00000035873.8 ENSMUSG00000035873 ENSMUST00000218332 Pawr protein_coding Interval_70504 chr17 11151017 11151244 + 0 NA intron (ENSMUSG00000023826.16, intron 2 of 6) protein_coding-intron (ENSMUSG00000023826.16, intron 2 of 6) -61662 ENSMUSG00000100402.1 ENSMUSG00000100402 ENSMUST00000190466 Gm28505 antisense Interval_13086 chr10 11252864 11254512 + 0 NA intron (ENSMUSG00000097007.3, intron 1 of 1) bidirectional_promoter_lncRNA-intron (ENSMUSG00000097007.3, intron 1 of 1) 27533 ENSMUSG00000097007.3 ENSMUSG00000097007 ENSMUST00000181688 4930432B10Rik bidirectional_promoter_lncRNA Interval_155185 chr8 27266821 27267441 + 0 NA intron (ENSMUSG00000031490.6, intron 3 of 4) protein_coding-intron (ENSMUSG00000031490.6, intron 1 of 2) 2717 ENSMUSG00000031490.6 ENSMUSG00000031490 ENSMUST00000210959 Eif4ebp1 protein_coding Interval_5491 chr1 89204403 89204658 + 0 NA Intergenic Intergenic 52451 ENSMUSG00000102083.1 ENSMUSG00000102083 ENSMUST00000191231 Gm5259 processed_pseudogene Interval_44078 chr13 40742008 40742329 + 0 NA Intergenic Intergenic 4600 ENSMUSG00000114597.1 ENSMUSG00000114597 ENSMUST00000224614 Gm47067 antisense Interval_27503 chr11 68275092 68275290 + 0 NA intron (ENSMUSG00000020902.12, intron 4 of 7) protein_coding-intron (ENSMUSG00000020902.12, intron 3 of 6) -4312 ENSMUSG00000084993.1 ENSMUSG00000084993 ENSMUST00000151817 Gm12305 sense_intronic Interval_46628 chr13 67742848 67745466 + 0 NA promoter-TSS (ENSMUSG00000044081.7) processed_transcript-promoter-TSS (ENSMUSG00000044081.7) -8118 ENSMUSG00000044081.7 ENSMUSG00000044081 ENSMUST00000181158 Zfp85os processed_transcript Interval_98283 chr2 150792657 150794565 + 0 NA intron (ENSMUSG00000033059.7, intron 1 of 6) protein_coding-intron (ENSMUSG00000033059.7, intron 1 of 19) -21711 ENSMUSG00000033059.7 ENSMUSG00000033059 ENSMUST00000135717 Pygb protein_coding Interval_2803 chr1 45580499 45581017 + 0 NA Intergenic Intergenic -21268 ENSMUSG00000100894.1 ENSMUSG00000100894 ENSMUST00000185744 Gm8304 processed_pseudogene Interval_169537 chr9 98972927 98973532 + 0 NA Intergenic Intergenic -13172 ENSMUSG00000032463.10 ENSMUSG00000032463 ENSMUST00000185472 Faim protein_coding Interval_152346 chr7 132160057 132160431 + 0 NA intron (ENSMUSG00000030849.18, intron 2 of 6) protein_coding-intron (ENSMUSG00000030849.18, intron 2 of 6) 6073 ENSMUSG00000086814.1 ENSMUSG00000086814 ENSMUST00000152302 Gm15677 antisense Interval_56402 chr14 118515582 118515856 + 0 NA intron (ENSMUSG00000032849.14, intron 25 of 29) protein_coding-intron (ENSMUSG00000032849.14, intron 26 of 30) -48353 ENSMUSG00000115075.1 ENSMUSG00000115075 ENSMUST00000227627 Gm49033 processed_pseudogene Interval_122652 chr5 24472635 24476033 + 0 NA exon (ENSMUSG00000023353.14, exon 1 of 9) protein_coding-exon (ENSMUSG00000023353.14, exon 1 of 9) 22127 ENSMUSG00000023353.14 ENSMUSG00000023353 ENSMUST00000199250 Agap3 protein_coding Interval_111853 chr4 31983582 31983834 + 0 NA intron (ENSMUSG00000028284.13, intron 1 of 5) protein_coding-intron (ENSMUSG00000028284.13, intron 6 of 16) -1959 ENSMUSG00000028284.13 ENSMUSG00000028284 ENSMUST00000131310 Map3k7 protein_coding Interval_17598 chr10 78083370 78083654 + 0 NA exon (ENSMUSG00000000732.9, exon 6 of 6) protein_coding-exon (ENSMUSG00000000732.9, exon 6 of 6) 10173 ENSMUSG00000000732.9 ENSMUSG00000000732 ENSMUST00000219633 Icosl protein_coding Interval_40344 chr12 104041436 104042030 + 0 NA intron (ENSMUSG00000041567.3, intron 1 of 4) protein_coding-intron (ENSMUSG00000041567.3, intron 1 of 4) 2710 ENSMUSG00000041567.3 ENSMUSG00000041567 ENSMUST00000043915 Serpina12 protein_coding Interval_27763 chr11 69846009 69847342 + 0 NA promoter-TSS (ENSMUSG00000019461.12) protein_coding-promoter-TSS (ENSMUSG00000019461.12) 58 ENSMUSG00000019461.12 ENSMUSG00000019461 ENSMUST00000019605 Plscr3 protein_coding Interval_110430 chr3 158036175 158037093 + 0 NA promoter-TSS (ENSMUSG00000055436.18) protein_coding-promoter-TSS (ENSMUSG00000055436.18) -116 ENSMUSG00000063052.9 ENSMUSG00000063052 ENSMUST00000199290 Lrrc40 protein_coding Interval_27154 chr11 63423888 63424564 + 0 NA Intergenic Intergenic 11057 ENSMUSG00000085113.1 ENSMUSG00000085113 ENSMUST00000151765 B130011K05Rik lincRNA Interval_131487 chr5 137518481 137518690 + 0 NA promoter-TSS (ENSMUSG00000029714.11) protein_coding-promoter-TSS (ENSMUSG00000029714.11) 37 ENSMUSG00000029714.11 ENSMUSG00000029714 ENSMUST00000031727 Gigyf1 protein_coding Interval_76381 chr17 79755497 79755726 + 0 NA Intergenic Intergenic -16351 ENSMUSG00000117616.1 ENSMUSG00000117616 ENSMUST00000234208 Gm49984 lincRNA Interval_23094 chr11 19919415 19920818 + 0 NA Intergenic Intergenic -34454 ENSMUSG00000045671.17 ENSMUSG00000045671 ENSMUST00000123036 Spred2 protein_coding Interval_106398 chr3 95928591 95930388 + 0 NA promoter-TSS (ENSMUSG00000015749.12) protein_coding-promoter-TSS (ENSMUSG00000015749.12) 164 ENSMUSG00000015749.12 ENSMUSG00000015749 ENSMUST00000168471 Anp32e protein_coding Interval_96001 chr2 119089224 119090007 + 0 NA intron (ENSMUSG00000027326.13, intron 15 of 23) protein_coding-intron (ENSMUSG00000027326.13, intron 14 of 22) -41903 ENSMUSG00000027323.10 ENSMUSG00000027323 ENSMUST00000143934 Rad51 protein_coding Interval_71965 chr17 27281213 27281436 + 0 NA Intergenic Intergenic -33258 ENSMUSG00000117916.1 ENSMUSG00000117916 ENSMUST00000236498 9630028I04Rik lincRNA Interval_39070 chr12 84829135 84829973 + 0 NA intron (ENSMUSG00000002020.15, intron 6 of 11) protein_coding-intron (ENSMUSG00000002020.15, intron 6 of 35) -46215 ENSMUSG00000092130.2 ENSMUSG00000092130 ENSMUST00000220643 D030025P21Rik antisense Interval_124218 chr5 41565927 41566752 + 0 NA Intergenic Intergenic 141818 ENSMUSG00000029128.12 ENSMUSG00000029128 ENSMUST00000201473 Rab28 protein_coding Interval_36353 chr12 41799145 41799573 + 0 NA intron (ENSMUSG00000113105.1, intron 1 of 1) protein_coding-intron (ENSMUSG00000056899.10, intron 6 of 6) 29164 ENSMUSG00000113105.1 ENSMUSG00000113105 ENSMUST00000221020 Gm47371 antisense Interval_173895 chrX 107782986 107783864 + 0 NA exon (ENSMUSG00000031242.7, exon 8 of 8) protein_coding-exon (ENSMUSG00000031242.7, exon 8 of 8) 10724 ENSMUSG00000031242.7 ENSMUSG00000031242 ENSMUST00000191183 2610002M06Rik protein_coding Interval_143068 chr6 149026452 149027058 + 0 NA intron (ENSMUSG00000030313.15, intron 10 of 13) protein_coding-intron (ENSMUSG00000030313.15, intron 10 of 20) -14225 ENSMUSG00000081532.1 ENSMUSG00000081532 ENSMUST00000120216 Gm15781 processed_pseudogene Interval_50148 chr14 8287925 8288368 + 0 NA Intergenic Intergenic 21649 ENSMUSG00000021750.16 ENSMUSG00000021750 ENSMUST00000137133 Fam107a protein_coding Interval_157209 chr8 67916849 67917323 + 0 NA intron (ENSMUSG00000030465.19, intron 5 of 16) protein_coding-intron (ENSMUSG00000030465.19, intron 3 of 14) -39683 ENSMUSG00000087266.2 ENSMUSG00000087266 ENSMUST00000127631 Gm15991 antisense Interval_36096 chr12 35640974 35643364 + 0 NA intron (ENSMUSG00000113548.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000113548.1, intron 1 of 2) 39625 ENSMUSG00000113548.1 ENSMUSG00000113548 ENSMUST00000223547 Gm34047 lincRNA Interval_72739 chr17 31849322 31850782 + 0 NA exon (ENSMUSG00000024042.7, exon 8 of 14) protein_coding-exon (ENSMUSG00000024042.7, exon 8 of 14) 1523 ENSMUSG00000024042.7 ENSMUSG00000024042 ENSMUST00000234142 Sik1 protein_coding Interval_80423 chr18 42068157 42068457 + 0 NA intron (ENSMUSG00000057719.11, intron 1 of 7) protein_coding-intron (ENSMUSG00000057719.11, intron 1 of 8) -69258 ENSMUSG00000073574.4 ENSMUSG00000073574 ENSMUST00000097591 Grxcr2 protein_coding Interval_45325 chr13 54425053 54425297 + 0 NA Intergenic Intergenic 4525 ENSMUSG00000089341.1 ENSMUSG00000089341 ENSMUST00000158716 Gm22668 misc_RNA Interval_1571 chr1 26907603 26908174 + 0 NA Intergenic Intergenic 51333 ENSMUSG00000095256.1 ENSMUSG00000095256 ENSMUST00000179494 n-R5s209 rRNA Interval_23975 chr11 29047178 29048864 + 0 NA Intergenic Intergenic -82723 ENSMUSG00000020464.15 ENSMUSG00000020464 ENSMUST00000131527 Pnpt1 protein_coding Interval_39156 chr12 85496748 85498326 + 0 NA Intergenic Intergenic 22846 ENSMUSG00000021250.13 ENSMUSG00000021250 ENSMUST00000134311 Fos protein_coding Interval_108210 chr3 122492114 122492650 + 0 NA intron (ENSMUSG00000028121.8, intron 1 of 2) protein_coding-intron (ENSMUSG00000028121.8, intron 3 of 11) 27655 ENSMUSG00000087743.1 ENSMUSG00000087743 ENSMUST00000157118 Gm25153 snRNA Interval_64656 chr16 13951169 13952002 + 0 NA Intergenic Intergenic 10491 ENSMUSG00000022679.13 ENSMUSG00000022679 ENSMUST00000156143 Mpv17l protein_coding Interval_45077 chr13 51902474 51903242 + 0 NA Intergenic Intergenic 56114 ENSMUSG00000021453.2 ENSMUSG00000021453 ENSMUST00000132480 Gadd45g protein_coding Interval_165789 chr9 53070471 53071511 + 0 NA Intergenic Intergenic -93197 ENSMUSG00000111693.1 ENSMUSG00000111693 ENSMUST00000213563 Gm47986 processed_pseudogene Interval_165448 chr9 48176800 48177298 + 0 NA intron (ENSMUSG00000044229.9, intron 1 of 10) protein_coding-intron (ENSMUSG00000044229.9, intron 1 of 10) -18084 ENSMUSG00000110924.1 ENSMUSG00000110924 ENSMUST00000214538 Gm40518 lincRNA Interval_87089 chr19 46055924 46057577 + 0 NA promoter-TSS (ENSMUSG00000055491.14) protein_coding-promoter-TSS (ENSMUSG00000055491.14) -114 ENSMUSG00000055491.14 ENSMUSG00000055491 ENSMUST00000146882 Pprc1 protein_coding Interval_42344 chr13 12249646 12250175 + 0 NA exon (ENSMUSG00000021311.9, exon 4 of 33) protein_coding-exon (ENSMUSG00000021311.9, exon 4 of 33) 8203 ENSMUSG00000021311.9 ENSMUSG00000021311 ENSMUST00000221290 Mtr protein_coding Interval_5646 chr1 90518689 90520057 + 0 NA Intergenic Intergenic -1123 ENSMUSG00000103292.1 ENSMUSG00000103292 ENSMUST00000192105 Gm35048 TEC Interval_150789 chr7 114589528 114590078 + 0 NA Intergenic Intergenic -26913 ENSMUSG00000030670.16 ENSMUSG00000030670 ENSMUST00000147428 Cyp2r1 protein_coding Interval_119709 chr4 139385673 139387503 + 0 NA intron (ENSMUSG00000066036.14, intron 1 of 105) protein_coding-intron (ENSMUSG00000066036.14, intron 1 of 105) 5929 ENSMUSG00000066036.14 ENSMUSG00000066036 ENSMUST00000135534 Ubr4 protein_coding Interval_12982 chr10 8883609 8884004 + 0 NA promoter-TSS (ENSMUSG00000097597.2) antisense-promoter-TSS (ENSMUSG00000097597.2) -831 ENSMUSG00000097597.2 ENSMUSG00000097597 ENSMUST00000180770 Gm26674 antisense Interval_115285 chr4 95317713 95318849 + 0 NA Intergenic Intergenic 84509 ENSMUSG00000100129.1 ENSMUSG00000100129 ENSMUST00000187014 Gm29064 lincRNA Interval_14136 chr10 27994075 27995132 + 0 NA Intergenic Intergenic 58239 ENSMUSG00000064208.6 ENSMUSG00000064208 ENSMUST00000077776 Gm10145 processed_pseudogene Interval_31475 chr11 100893322 100894367 + 0 NA promoter-TSS (ENSMUSG00000004040.16) protein_coding-promoter-TSS (ENSMUSG00000004040.16) 5463 ENSMUSG00000004040.16 ENSMUSG00000004040 ENSMUST00000130686 Stat3 protein_coding Interval_143827 chr7 16557964 16558203 + 0 NA intron (ENSMUSG00000058230.12, intron 3 of 7) protein_coding-intron (ENSMUSG00000058230.12, intron 2 of 6) -42945 ENSMUSG00000101135.1 ENSMUSG00000101135 ENSMUST00000191109 Gm17981 processed_pseudogene Interval_101330 chr2 180488009 180488906 + 0 NA Intergenic Intergenic -11770 ENSMUSG00000027568.9 ENSMUSG00000027568 ENSMUST00000170448 Ntsr1 protein_coding Interval_75712 chr17 70811999 70812188 + 0 NA intron (ENSMUSG00000003279.17, intron 1 of 2) protein_coding-intron (ENSMUSG00000003279.17, intron 13 of 14) 3021 ENSMUSG00000003279.17 ENSMUSG00000003279 ENSMUST00000233780 Dlgap1 protein_coding Interval_92146 chr2 54114217 54114918 + 0 NA Intergenic Intergenic 14137 ENSMUSG00000064596.1 ENSMUSG00000064596 ENSMUST00000082662 Gm22298 snoRNA Interval_10922 chr1 177026136 177026601 + 0 NA intron (ENSMUSG00000019699.16, intron 12 of 12) protein_coding-intron (ENSMUSG00000019699.16, intron 12 of 12) 10568 ENSMUSG00000104391.1 ENSMUSG00000104391 ENSMUST00000192402 Gm37960 TEC Interval_5304 chr1 87379919 87381561 + 0 NA intron (ENSMUSG00000048000.15, intron 6 of 26) protein_coding-intron (ENSMUSG00000048000.15, intron 8 of 28) 8649 ENSMUSG00000079436.3 ENSMUSG00000079436 ENSMUST00000174179 Kcnj13 protein_coding Interval_108623 chr3 129612757 129614579 + 0 NA intron (ENSMUSG00000041220.10, intron 3 of 3) protein_coding-intron (ENSMUSG00000041220.10, intron 3 of 4) 70573 ENSMUSG00000092701.1 ENSMUSG00000092701 ENSMUST00000174960 Gm24515 miRNA Interval_24824 chr11 39894398 39894647 + 0 NA Intergenic Intergenic 63866 ENSMUSG00000088603.1 ENSMUSG00000088603 ENSMUST00000157978 Gm24192 snRNA Interval_157353 chr8 69813648 69814835 + 0 NA TTS (ENSMUSG00000036246.14) protein_coding-TTS (ENSMUSG00000036246.14) 3548 ENSMUSG00000036246.14 ENSMUSG00000036246 ENSMUST00000144540 Gmip protein_coding Interval_59667 chr15 57745022 57745711 + 0 NA intron (ENSMUSG00000071757.10, intron 1 of 2) protein_coding-intron (ENSMUSG00000071757.10, intron 1 of 3) -6700 ENSMUSG00000047807.10 ENSMUSG00000047807 ENSMUST00000176703 9330154K18Rik antisense Interval_1214 chr1 17179060 17179370 + 0 NA Intergenic Intergenic 10812 ENSMUSG00000099899.1 ENSMUSG00000099899 ENSMUST00000187817 Gm28784 lincRNA Interval_69688 chr16 95566152 95566516 + 0 NA intron (ENSMUSG00000040732.20, intron 1 of 10) protein_coding-intron (ENSMUSG00000040732.20, intron 1 of 10) -35969 ENSMUSG00000040732.20 ENSMUSG00000040732 ENSMUST00000121809 Erg protein_coding Interval_96150 chr2 120075961 120077003 + 0 NA intron (ENSMUSG00000074899.6, intron 10 of 65) protein_coding-intron (ENSMUSG00000074899.6, intron 10 of 65) 9196 ENSMUSG00000074899.6 ENSMUSG00000074899 ENSMUST00000156159 Sptbn5 protein_coding Interval_17321 chr10 75853611 75854265 + 0 NA Intergenic Intergenic 6254 ENSMUSG00000033307.7 ENSMUSG00000033307 ENSMUST00000218267 Mif protein_coding Interval_28950 chr11 79493479 79494340 + 0 NA intron (ENSMUSG00000020716.16, intron 35 of 56) protein_coding-intron (ENSMUSG00000020716.16, intron 36 of 57) -9878 ENSMUSG00000091523.1 ENSMUSG00000091523 ENSMUST00000165610 AU040972 antisense Interval_133121 chr5 149996678 149998207 + 0 NA Intergenic Intergenic 5872 ENSMUSG00000107056.1 ENSMUSG00000107056 ENSMUST00000202470 Gm21048 processed_pseudogene Interval_103656 chr3 51423844 51424053 + 0 NA TTS (ENSMUSG00000103191.1) TEC-TTS (ENSMUSG00000103191.1) 335 ENSMUSG00000103191.1 ENSMUSG00000103191 ENSMUST00000191756 Gm37646 TEC Interval_6935 chr1 121035058 121036153 + 0 NA Intergenic Intergenic -51866 ENSMUSG00000097881.7 ENSMUSG00000097881 ENSMUST00000181183 Celrr lincRNA Interval_28909 chr11 79213720 79214590 + 0 NA TTS (ENSMUSG00000081000.1) processed_pseudogene-TTS (ENSMUSG00000081000.1) 1359 ENSMUSG00000081000.1 ENSMUSG00000081000 ENSMUST00000121698 Gm11200 processed_pseudogene Interval_149461 chr7 98769117 98770761 + 0 NA Intergenic Intergenic -34858 ENSMUSG00000108988.1 ENSMUSG00000108988 ENSMUST00000208941 Gm44934 lincRNA Interval_101307 chr2 180288927 180290100 + 0 NA intron (ENSMUSG00000038980.1, intron 1 of 12) protein_coding-intron (ENSMUSG00000038980.1, intron 1 of 12) 366 ENSMUSG00000038980.1 ENSMUSG00000038980 ENSMUST00000038529 Rbbp8nl protein_coding Interval_146219 chr7 44803570 44804267 + 0 NA Intergenic Intergenic -12170 ENSMUSG00000109511.1 ENSMUSG00000109511 ENSMUST00000207085 Nup62 protein_coding Interval_113702 chr4 57741282 57742448 + 0 NA promoter-TSS (ENSMUSG00000038729.24) protein_coding-promoter-TSS (ENSMUSG00000038729.24) -20742 ENSMUSG00000089286.1 ENSMUSG00000089286 ENSMUST00000158661 Gm24277 snRNA Interval_10852 chr1 176013616 176014431 + 0 NA intron (ENSMUSG00000055214.15, intron 5 of 5) protein_coding-intron (ENSMUSG00000055214.15, intron 5 of 9) 18700 ENSMUSG00000104363.1 ENSMUSG00000104363 ENSMUST00000192680 Gm38081 TEC Interval_46756 chr13 69991375 69992089 + 0 NA Intergenic Intergenic 15882 ENSMUSG00000113980.1 ENSMUSG00000113980 ENSMUST00000221449 Gm47655 processed_pseudogene Interval_170512 chr9 108431278 108432172 + 0 NA Intergenic Intergenic -1573 ENSMUSG00000088577.1 ENSMUSG00000088577 ENSMUST00000157952 Gm25456 snoRNA Interval_100956 chr2 173611372 173611585 + 0 NA intron (ENSMUSG00000055897.13, intron 1 of 1) transcribed_unprocessed_pseudogene-intron (ENSMUSG00000055897.13, intron 1 of 1) -20165 ENSMUSG00000055897.13 ENSMUSG00000055897 ENSMUST00000133185 Ppp4r1l-ps transcribed_unprocessed_pseudogene Interval_108203 chr3 122465952 122466635 + 0 NA intron (ENSMUSG00000028121.8, intron 3 of 11) protein_coding-intron (ENSMUSG00000028121.8, intron 3 of 11) 1566 ENSMUSG00000087743.1 ENSMUSG00000087743 ENSMUST00000157118 Gm25153 snRNA Interval_16135 chr10 60948547 60949819 + 0 NA Intergenic Intergenic -11051 ENSMUSG00000037247.3 ENSMUSG00000037247 ENSMUST00000036304 Pldi lincRNA Interval_39365 chr12 86918502 86919843 + 0 NA Intergenic Intergenic -33485 ENSMUSG00000034157.12 ENSMUSG00000034157 ENSMUST00000191463 Cipc protein_coding Interval_21232 chr10 127338778 127340804 + 0 NA intron (ENSMUSG00000025407.7, intron 2 of 5) protein_coding-intron (ENSMUSG00000025407.7, intron 2 of 12) -2736 ENSMUSG00000025407.7 ENSMUSG00000025407 ENSMUST00000218451 Gli1 protein_coding Interval_148289 chr7 80319726 80320627 + 0 NA promoter-TSS (ENSMUSG00000038930.11) protein_coding-promoter-TSS (ENSMUSG00000038930.11) 3958 ENSMUSG00000038930.11 ENSMUSG00000038930 ENSMUST00000155124 Rccd1 protein_coding Interval_36053 chr12 34146908 34147391 + 0 NA intron (ENSMUSG00000004698.11, intron 20 of 21) protein_coding-intron (ENSMUSG00000004698.11, intron 21 of 24) 143986 ENSMUSG00000113756.1 ENSMUSG00000113756 ENSMUST00000221733 Gm18025 processed_pseudogene Interval_19855 chr10 110504155 110504618 + 0 NA Intergenic Intergenic 23749 ENSMUSG00000111948.1 ENSMUSG00000111948 ENSMUST00000218914 Gm47055 processed_pseudogene Interval_172787 chrX 49101992 49102209 + 0 NA intron (ENSMUSG00000031109.16, intron 2 of 4) protein_coding-intron (ENSMUSG00000031109.16, intron 3 of 15) -21348 ENSMUSG00000031109.16 ENSMUSG00000031109 ENSMUST00000141393 Enox2 protein_coding Interval_121282 chr4 154702093 154702381 + 0 NA Intergenic Intergenic -34370 ENSMUSG00000051276.4 ENSMUSG00000051276 ENSMUST00000060062 Actrt2 protein_coding Interval_75654 chr17 70049130 70049341 + 0 NA intron (ENSMUSG00000003279.17, intron 1 of 1) protein_coding-intron (ENSMUSG00000003279.17, intron 1 of 14) -123404 ENSMUSG00000117078.1 ENSMUSG00000117078 ENSMUST00000232868 Gm4561 processed_pseudogene Interval_164232 chr9 33260123 33260711 + 0 NA intron (ENSMUSG00000111645.1, intron 4 of 4) lincRNA-intron (ENSMUSG00000111645.1, intron 4 of 4) -35827 ENSMUSG00000111467.1 ENSMUSG00000111467 ENSMUST00000215382 Gm47775 lincRNA Interval_51114 chr14 23552342 23552612 + 0 NA intron (ENSMUSG00000063142.15, intron 5 of 16) protein_coding-intron (ENSMUSG00000063142.15, intron 4 of 28) -7771 ENSMUSG00000100100.1 ENSMUSG00000100100 ENSMUST00000187439 Gm29626 antisense Interval_161407 chr8 120295279 120295724 + 0 NA intron (ENSMUSG00000031822.20, intron 1 of 2) protein_coding-intron (ENSMUSG00000092329.1, intron 1 of 15) -67271 ENSMUSG00000097960.1 ENSMUSG00000097960 ENSMUST00000183235 A330074K22Rik lincRNA Interval_72249 chr17 28806750 28807917 + 0 NA exon (ENSMUSG00000063952.16, exon 2 of 13) protein_coding-exon (ENSMUSG00000063952.16, exon 2 of 13) -5710 ENSMUSG00000117255.1 ENSMUSG00000117255 ENSMUST00000233925 Gm49864 bidirectional_promoter_lncRNA Interval_31607 chr11 101672979 101674554 + 0 NA Intergenic Intergenic 8225 ENSMUSG00000034936.2 ENSMUSG00000034936 ENSMUST00000039388 Arl4d protein_coding Interval_53447 chr14 57571128 57571936 + 0 NA promoter-TSS (ENSMUSG00000021951.7) protein_coding-promoter-TSS (ENSMUSG00000021951.7) 80 ENSMUSG00000021951.7 ENSMUSG00000021951 ENSMUST00000225504 Eef1akmt1 protein_coding Interval_112092 chr4 34635730 34635940 + 0 NA intron (ENSMUSG00000028292.14, intron 6 of 19) protein_coding-intron (ENSMUSG00000028292.14, intron 6 of 19) 20857 ENSMUSG00000028292.14 ENSMUSG00000028292 ENSMUST00000141519 Rars2 protein_coding Interval_145738 chr7 37951269 37952437 + 0 NA Intergenic Intergenic 71698 ENSMUSG00000030421.9 ENSMUSG00000030421 ENSMUST00000206169 Uri1 protein_coding Interval_98929 chr2 156079314 156080015 + 0 NA intron (ENSMUSG00000074643.12, intron 1 of 7) protein_coding-intron (ENSMUSG00000074643.12, intron 1 of 15) -3385 ENSMUSG00000074643.12 ENSMUSG00000074643 ENSMUST00000184152 Cpne1 protein_coding Interval_124730 chr5 53588756 53590880 + 0 NA promoter-TSS (ENSMUSG00000039191.12) protein_coding-promoter-TSS (ENSMUSG00000039191.12) -42496 ENSMUSG00000107111.1 ENSMUSG00000107111 ENSMUST00000202154 Gm40304 antisense Interval_162626 chr9 6927275 6928349 + 0 NA TTS (ENSMUSG00000047193.16) protein_coding-TTS (ENSMUSG00000047193.16) 125969 ENSMUSG00000111464.1 ENSMUSG00000111464 ENSMUST00000213261 Gm48675 processed_pseudogene Interval_12118 chr1 189856884 189857292 + 0 NA intron (ENSMUSG00000026604.17, intron 15 of 18) protein_coding-intron (ENSMUSG00000026604.17, intron 14 of 17) 12045 ENSMUSG00000026604.17 ENSMUSG00000026604 ENSMUST00000148129 Ptpn14 protein_coding Interval_11873 chr1 186618085 186618350 + 0 NA Intergenic Intergenic -58525 ENSMUSG00000089045.1 ENSMUSG00000089045 ENSMUST00000158420 Gm26169 snoRNA Interval_44288 chr13 43356597 43357416 + 0 NA Intergenic Intergenic -8500 ENSMUSG00000054021.6 ENSMUSG00000054021 ENSMUST00000222106 Sirt5 protein_coding Interval_123674 chr5 34431659 34431892 + 0 NA intron (ENSMUSG00000037210.16, intron 1 of 5) protein_coding-intron (ENSMUSG00000037210.16, intron 2 of 16) 556 ENSMUSG00000037210.16 ENSMUSG00000037210 ENSMUST00000181379 Fam193a protein_coding Interval_28742 chr11 78023016 78024056 + 0 NA promoter-TSS (ENSMUSG00000037791.15) protein_coding-promoter-TSS (ENSMUSG00000037791.15) -93 ENSMUSG00000037791.15 ENSMUSG00000037791 ENSMUST00000125079 Phf12 protein_coding Interval_165742 chr9 52089777 52089978 + 0 NA intron (ENSMUSG00000032050.18, intron 14 of 14) protein_coding-intron (ENSMUSG00000032050.18, intron 14 of 14) 13902 ENSMUSG00000099213.1 ENSMUSG00000099213 ENSMUST00000185123 Gm27686 miRNA Interval_89176 chr2 17863840 17864325 + 0 NA Intergenic Intergenic -66098 ENSMUSG00000081851.1 ENSMUSG00000081851 ENSMUST00000120245 Gm13323 processed_pseudogene Interval_124567 chr5 51169672 51170468 + 0 NA Intergenic Intergenic 53604 ENSMUSG00000104635.1 ENSMUSG00000104635 ENSMUST00000199039 Gm44377 miRNA Interval_166823 chr9 63038000 63038205 + 0 NA Intergenic Intergenic 10542 ENSMUSG00000064855.1 ENSMUSG00000064855 ENSMUST00000082921 Gm24526 snRNA Interval_12863 chr10 6893433 6893644 + 0 NA intron (ENSMUSG00000064065.15, intron 8 of 8) protein_coding-intron (ENSMUSG00000000766.18, intron 3 of 4) 104729 ENSMUSG00000000766.18 ENSMUSG00000000766 ENSMUST00000148625 Oprm1 protein_coding Interval_157695 chr8 72341540 72341745 + 0 NA intron (ENSMUSG00000006276.10, intron 21 of 21) protein_coding-intron (ENSMUSG00000006276.10, intron 23 of 23) 22609 ENSMUSG00000055148.7 ENSMUSG00000055148 ENSMUST00000067912 Klf2 protein_coding Interval_53603 chr14 59806036 59808122 + 0 NA intron (ENSMUSG00000021983.16, intron 26 of 35) protein_coding-intron (ENSMUSG00000021983.16, intron 26 of 35) 164531 ENSMUSG00000114593.1 ENSMUSG00000114593 ENSMUST00000224256 Gm19716 transcribed_processed_pseudogene Interval_107199 chr3 104541222 104542449 + 0 NA Intergenic Intergenic -30522 ENSMUSG00000105659.1 ENSMUSG00000105659 ENSMUST00000196088 4930509H03Rik sense_intronic Interval_173051 chrX 68678002 68679533 + 0 NA promoter-TSS (ENSMUSG00000000838.17) protein_coding-promoter-TSS (ENSMUSG00000000838.17) 185 ENSMUSG00000000838.17 ENSMUSG00000000838 ENSMUST00000127993 Fmr1 protein_coding Interval_47928 chr13 94443147 94443950 + 0 NA intron (ENSMUSG00000021686.6, intron 8 of 26) protein_coding-intron (ENSMUSG00000021686.6, intron 8 of 26) -29315 ENSMUSG00000021686.6 ENSMUSG00000021686 ENSMUST00000220505 Ap3b1 protein_coding Interval_67795 chr16 57257507 57257822 + 0 NA Intergenic Intergenic 8141 ENSMUSG00000116675.1 ENSMUSG00000116675 ENSMUST00000231600 Gm49581 processed_pseudogene Interval_74681 chr17 55910599 55911325 + 0 NA Intergenic Intergenic 4908 ENSMUSG00000059912.4 ENSMUSG00000059912 ENSMUST00000074828 Rpl21-ps6 processed_pseudogene Interval_6513 chr1 113947354 113948200 + 0 NA intron (ENSMUSG00000097648.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000097648.1, intron 1 of 2) 16357 ENSMUSG00000097648.1 ENSMUSG00000097648 ENSMUST00000180837 9330185C12Rik lincRNA Interval_102024 chr3 15230038 15232326 + 0 NA Intergenic Intergenic -59740 ENSMUSG00000103912.1 ENSMUSG00000103912 ENSMUST00000194008 Gm33819 lincRNA Interval_100100 chr2 167071492 167072831 + 0 NA Intergenic Intergenic 6885 ENSMUSG00000077698.1 ENSMUSG00000077698 ENSMUST00000104510 Snord12 snoRNA Interval_87923 chr19 57135607 57136627 + 0 NA promoter-TSS (ENSMUSG00000025085.16) protein_coding-promoter-TSS (ENSMUSG00000025085.16) -137843 ENSMUSG00000117684.1 ENSMUSG00000117684 ENSMUST00000237596 4930449E18Rik antisense Interval_67127 chr16 43682282 43682806 + 0 NA Intergenic Intergenic 6852 ENSMUSG00000116565.1 ENSMUSG00000116565 ENSMUST00000231991 Gm49734 processed_pseudogene Interval_115004 chr4 88356595 88356871 + 0 NA intron (ENSMUSG00000038368.16, intron 27 of 41) protein_coding-intron (ENSMUSG00000038368.16, intron 29 of 43) -43617 ENSMUSG00000038368.16 ENSMUSG00000038368 ENSMUST00000107147 Focad protein_coding Interval_120222 chr4 144419951 144421107 + 0 NA intron (ENSMUSG00000028589.2, intron 2 of 3) protein_coding-intron (ENSMUSG00000028589.2, intron 2 of 3) -12112 ENSMUSG00000028591.11 ENSMUSG00000028591 ENSMUST00000123854 Pramef12 protein_coding Interval_43539 chr13 32897689 32898307 + 0 NA intron (ENSMUSG00000079049.9, intron 1 of 6) protein_coding-intron (ENSMUSG00000079049.9, intron 1 of 6) 159 ENSMUSG00000079049.9 ENSMUSG00000079049 ENSMUST00000221019 Serpinb1c protein_coding Interval_144052 chr7 19201683 19203573 + 0 NA intron (ENSMUSG00000040811.15, intron 14 of 16) protein_coding-intron (ENSMUSG00000040811.15, intron 16 of 18) -9910 ENSMUSG00000044317.7 ENSMUSG00000044317 ENSMUST00000060225 Gpr4 protein_coding Interval_64889 chr16 17008452 17008672 + 0 NA intron (ENSMUSG00000063358.17, intron 1 of 8) protein_coding-intron (ENSMUSG00000063358.17, intron 1 of 8) -2361 ENSMUSG00000087951.1 ENSMUSG00000087951 ENSMUST00000157326 Gm22558 snRNA Interval_137047 chr6 66943689 66944648 + 0 NA intron (ENSMUSG00000036402.13, intron 3 of 4) protein_coding-intron (ENSMUSG00000036402.13, intron 3 of 4) 47277 ENSMUSG00000036402.13 ENSMUSG00000036402 ENSMUST00000204862 Gng12 protein_coding Interval_127892 chr5 108660148 108661358 + 0 NA promoter-TSS (ENSMUSG00000004815.12) protein_coding-promoter-TSS (ENSMUSG00000004815.12) -5620 ENSMUSG00000004815.12 ENSMUSG00000004815 ENSMUST00000139598 Dgkq protein_coding Interval_78738 chr18 20001463 20002457 + 0 NA promoter-TSS (ENSMUSG00000059898.9) protein_coding-promoter-TSS (ENSMUSG00000059898.9) -5 ENSMUSG00000059898.9 ENSMUSG00000059898 ENSMUST00000223946 Dsc3 protein_coding Interval_109267 chr3 138506342 138506975 + 0 NA Intergenic Intergenic -2446 ENSMUSG00000106462.1 ENSMUSG00000106462 ENSMUST00000200122 Gm43725 processed_pseudogene Interval_116108 chr4 107737784 107738657 + 0 NA intron (ENSMUSG00000085549.7, intron 3 of 3) lincRNA-intron (ENSMUSG00000085549.7, intron 3 of 3) 22245 ENSMUSG00000084874.4 ENSMUSG00000084874 ENSMUST00000154610 Gm12906 processed_pseudogene Interval_32682 chr11 109610958 109612126 + 0 NA promoter-TSS (ENSMUSG00000041895.15) protein_coding-promoter-TSS (ENSMUSG00000041895.15) 425 ENSMUSG00000041895.15 ENSMUSG00000041895 ENSMUST00000153738 Wipi1 protein_coding Interval_137308 chr6 71225398 71225807 + 0 NA intron (ENSMUSG00000055027.17, intron 4 of 8) protein_coding-intron (ENSMUSG00000055027.17, intron 5 of 9) -8728 ENSMUSG00000055027.17 ENSMUSG00000055027 ENSMUST00000173297 Smyd1 protein_coding Interval_37943 chr12 73214581 73214941 + 0 NA intron (ENSMUSG00000021103.12, intron 6 of 6) protein_coding-intron (ENSMUSG00000021103.12, intron 6 of 7) -68856 ENSMUSG00000077785.1 ENSMUSG00000077785 ENSMUST00000104597 Gm23910 snoRNA Interval_137390 chr6 71865593 71865784 + 0 NA exon (ENSMUSG00000052337.15, exon 1 of 1) protein_coding-exon (ENSMUSG00000052337.15, exon 1 of 1) 4317 ENSMUSG00000108681.1 ENSMUSG00000108681 ENSMUST00000206836 Gm17825 processed_pseudogene Interval_26670 chr11 59570971 59572299 + 0 NA exon (ENSMUSG00000059610.5, exon 1 of 1) protein_coding-exon (ENSMUSG00000059610.5, exon 1 of 1) 4534 ENSMUSG00000059610.5 ENSMUSG00000059610 ENSMUST00000071943 Olfr222 protein_coding Interval_73949 chr17 45628146 45628477 + 0 NA Intergenic Intergenic 7632 ENSMUSG00000065743.1 ENSMUSG00000065743 ENSMUST00000083809 Gm25008 snRNA Interval_82135 chr18 67939430 67940253 + 0 NA intron (ENSMUSG00000024544.9, intron 1 of 5) protein_coding-intron (ENSMUSG00000024544.9, intron 1 of 5) 32213 ENSMUSG00000118326.1 ENSMUSG00000118326 ENSMUST00000235570 Gm8887 processed_pseudogene Interval_62402 chr15 91899180 91899473 + 0 NA intron (ENSMUSG00000044021.14, intron 19 of 25) protein_coding-intron (ENSMUSG00000044021.14, intron 26 of 42) 21547 ENSMUSG00000044021.14 ENSMUSG00000044021 ENSMUST00000088547 Muc19 protein_coding Interval_98799 chr2 155079806 155080347 + 0 NA exon (ENSMUSG00000109877.1, exon 3 of 4) antisense-exon (ENSMUSG00000109877.1, exon 3 of 4) -1263 ENSMUSG00000109877.1 ENSMUSG00000109877 ENSMUST00000210144 Gm45609 antisense Interval_114946 chr4 87455058 87455298 + 0 NA Intergenic Intergenic 22906 ENSMUSG00000093065.1 ENSMUSG00000093065 ENSMUST00000175324 Gm23154 miRNA Interval_45012 chr13 51418481 51419305 + 0 NA promoter-TSS (ENSMUSG00000112959.1) lincRNA-promoter-TSS (ENSMUSG00000112959.1) -207 ENSMUSG00000112959.1 ENSMUSG00000112959 ENSMUST00000220470 Gm32834 lincRNA Interval_85112 chr19 22960651 22961110 + 0 NA intron (ENSMUSG00000052387.16, intron 21 of 24) protein_coding-intron (ENSMUSG00000052387.16, intron 22 of 26) -100574 ENSMUSG00000118155.1 ENSMUSG00000118155 ENSMUST00000235686 Gm50136 lincRNA Interval_132574 chr5 146407792 146408593 + 0 NA intron (ENSMUSG00000029636.11, intron 1 of 9) protein_coding-intron (ENSMUSG00000029636.11, intron 1 of 9) -47417 ENSMUSG00000029636.11 ENSMUSG00000029636 ENSMUST00000238592 Wasf3 protein_coding Interval_106317 chr3 95317241 95318176 + 0 NA promoter-TSS (ENSMUSG00000015714.11) protein_coding-promoter-TSS (ENSMUSG00000015714.11) 358 ENSMUSG00000015714.11 ENSMUSG00000015714 ENSMUST00000142398 Cers2 protein_coding Interval_163801 chr9 26268149 26268821 + 0 NA Intergenic Intergenic 100173 ENSMUSG00000111238.1 ENSMUSG00000111238 ENSMUST00000217552 Gm19113 processed_pseudogene Interval_10683 chr1 172701088 172701749 + 0 NA intron (ENSMUSG00000037942.5, intron 1 of 1) protein_coding-intron (ENSMUSG00000037942.5, intron 1 of 1) 3362 ENSMUSG00000037942.5 ENSMUSG00000037942 ENSMUST00000194251 Crp protein_coding Interval_127625 chr5 105876090 105877275 + 0 NA promoter-TSS (ENSMUSG00000029290.12) protein_coding-promoter-TSS (ENSMUSG00000029290.12) 117 ENSMUSG00000029290.12 ENSMUSG00000029290 ENSMUST00000147683 Zfp326 protein_coding Interval_49290 chr13 110333187 110333386 + 0 NA Intergenic Intergenic 23913 ENSMUSG00000046006.6 ENSMUSG00000046006 ENSMUST00000224534 Gapt protein_coding Interval_55557 chr14 92145300 92145959 + 0 NA Intergenic Intergenic -87876 ENSMUSG00000115308.1 ENSMUSG00000115308 ENSMUST00000228682 Gm48944 processed_pseudogene Interval_29042 chr11 80027525 80028312 + 0 NA intron (ENSMUSG00000017548.15, intron 12 of 14) protein_coding-intron (ENSMUSG00000017548.15, intron 13 of 15) 34812 ENSMUSG00000017548.15 ENSMUSG00000017548 ENSMUST00000144188 Suz12 protein_coding Interval_8153 chr1 136118852 136119111 + 0 NA exon (ENSMUSG00000026407.17, exon 44 of 44) protein_coding-exon (ENSMUSG00000026407.17, exon 44 of 44) 841 ENSMUSG00000102717.1 ENSMUSG00000102717 ENSMUST00000194155 Gm37759 antisense Interval_74791 chr17 56558260 56559353 + 0 NA Intergenic Intergenic -4419 ENSMUSG00000110218.1 ENSMUSG00000110218 ENSMUST00000209718 Gm20219 protein_coding Interval_15773 chr10 56388072 56388643 + 0 NA TTS (ENSMUSG00000050953.10) protein_coding-TTS (ENSMUSG00000050953.10) 10908 ENSMUSG00000050953.10 ENSMUSG00000050953 ENSMUST00000220069 Gja1 protein_coding Interval_132023 chr5 142347813 142348039 + 0 NA Intergenic Intergenic -53571 ENSMUSG00000056493.9 ENSMUSG00000056493 ENSMUST00000072837 Foxk1 protein_coding Interval_75472 chr17 66907107 66907382 + 0 NA intron (ENSMUSG00000033278.10, intron 4 of 6) protein_coding-intron (ENSMUSG00000033278.10, intron 14 of 32) 22955 ENSMUSG00000117332.1 ENSMUSG00000117332 ENSMUST00000233228 Gm49942 TEC Interval_72347 chr17 29340930 29342478 + 0 NA intron (ENSMUSG00000024012.18, intron 2 of 12) protein_coding-intron (ENSMUSG00000024012.18, intron 2 of 11) -4566 ENSMUSG00000024012.18 ENSMUSG00000024012 ENSMUST00000132753 Mtch1 protein_coding Interval_160014 chr8 105757949 105759144 + 0 NA promoter-TSS (ENSMUSG00000013150.15) protein_coding-promoter-TSS (ENSMUSG00000013150.15) 84 ENSMUSG00000013150.15 ENSMUSG00000013150 ENSMUST00000135959 Gfod2 protein_coding Interval_18550 chr10 87486011 87486640 + 0 NA Intergenic Intergenic 7335 ENSMUSG00000020052.9 ENSMUSG00000020052 ENSMUST00000020243 Ascl1 protein_coding Interval_141079 chr6 124847025 124847671 + 0 NA intron (ENSMUSG00000023191.9, intron 5 of 5) protein_coding-intron (ENSMUSG00000023191.9, intron 9 of 14) 7576 ENSMUSG00000023191.9 ENSMUSG00000023191 ENSMUST00000135546 P3h3 protein_coding Interval_51886 chr14 33343262 33343454 + 0 NA TTS (ENSMUSG00000063506.14) protein_coding-TTS (ENSMUSG00000063506.14) 26785 ENSMUSG00000087639.1 ENSMUSG00000087639 ENSMUST00000137359 Gm15512 antisense Interval_60669 chr15 76047338 76049753 + 0 NA promoter-TSS (ENSMUSG00000022568.17) protein_coding-promoter-TSS (ENSMUSG00000022568.17) 472 ENSMUSG00000022568.17 ENSMUSG00000022568 ENSMUST00000148211 Scrib protein_coding Interval_47805 chr13 93170773 93171033 + 0 NA intron (ENSMUSG00000042167.6, intron 8 of 14) protein_coding-intron (ENSMUSG00000042167.6, intron 8 of 14) -2474 ENSMUSG00000042167.6 ENSMUSG00000042167 ENSMUST00000224464 Tent2 protein_coding Interval_170918 chr9 112117545 112119668 + 0 NA TTS (ENSMUSG00000065441.2) miRNA-TTS (ENSMUSG00000065441.2) 105 ENSMUSG00000065441.2 ENSMUSG00000065441 ENSMUST00000083507 Mir128-2 miRNA Interval_43359 chr13 29656545 29656837 + 0 NA intron (ENSMUSG00000006191.17, intron 8 of 11) protein_coding-intron (ENSMUSG00000006191.17, intron 8 of 15) -139237 ENSMUSG00000006191.17 ENSMUSG00000006191 ENSMUST00000129231 Cdkal1 protein_coding Interval_56610 chr14 120839542 120841335 + 0 NA Intergenic Intergenic 13280 ENSMUSG00000115028.1 ENSMUSG00000115028 ENSMUST00000228417 Gm9391 processed_pseudogene Interval_166241 chr9 57740400 57741911 + 0 NA intron (ENSMUSG00000038957.13, intron 4 of 5) protein_coding-intron (ENSMUSG00000038957.13, intron 5 of 6) 24034 ENSMUSG00000032316.8 ENSMUSG00000032316 ENSMUST00000215158 Clk3 protein_coding Interval_86894 chr19 44676182 44677077 + 0 NA Intergenic Intergenic 18831 ENSMUSG00000097683.2 ENSMUSG00000097683 ENSMUST00000181365 Gm26644 lincRNA Interval_122769 chr5 25258572 25258966 + 0 NA intron (ENSMUSG00000038072.14, intron 7 of 11) protein_coding-intron (ENSMUSG00000038072.14, intron 7 of 11) -35616 ENSMUSG00000054116.1 ENSMUSG00000054116 ENSMUST00000066954 E130116L18Rik protein_coding Interval_45003 chr13 51378075 51379485 + 0 NA intron (ENSMUSG00000112959.1, intron 2 of 2) lincRNA-intron (ENSMUSG00000112959.1, intron 2 of 2) -29859 ENSMUSG00000067586.4 ENSMUSG00000067586 ENSMUST00000087978 S1pr3 protein_coding Interval_14798 chr10 39989871 39990236 + 0 NA Intergenic Intergenic -3414 ENSMUSG00000038528.15 ENSMUSG00000038528 ENSMUST00000170505 Mfsd4b5 protein_coding Interval_55521 chr14 90432962 90433722 + 0 NA Intergenic Intergenic 76955 ENSMUSG00000077619.1 ENSMUSG00000077619 ENSMUST00000104431 Gm25495 snoRNA Interval_45041 chr13 51688671 51688887 + 0 NA intron (ENSMUSG00000021451.16, intron 3 of 4) protein_coding-intron (ENSMUSG00000021451.16, intron 3 of 4) 36982 ENSMUSG00000035139.14 ENSMUSG00000035139 ENSMUST00000153877 Secisbp2 protein_coding Interval_31254 chr11 99141560 99142619 + 0 NA Intergenic Intergenic 12988 ENSMUSG00000037944.8 ENSMUSG00000037944 ENSMUST00000103134 Ccr7 protein_coding Interval_156001 chr8 41806101 41806299 + 0 NA Intergenic Intergenic -21067 ENSMUSG00000102046.1 ENSMUSG00000102046 ENSMUST00000188324 2810404M03Rik lincRNA Interval_29588 chr11 85198010 85198389 + 0 NA intron (ENSMUSG00000018481.9, intron 9 of 12) protein_coding-intron (ENSMUSG00000018481.9, intron 9 of 12) -18398 ENSMUSG00000080791.1 ENSMUSG00000080791 ENSMUST00000119676 Akirin1-ps processed_pseudogene Interval_120419 chr4 148479255 148479613 + 0 NA intron (ENSMUSG00000028991.15, intron 19 of 57) protein_coding-intron (ENSMUSG00000028991.15, intron 19 of 57) 21026 ENSMUSG00000028989.3 ENSMUSG00000028989 ENSMUST00000030840 Angptl7 protein_coding Interval_118995 chr4 134911001 134911602 + 0 NA intron (ENSMUSG00000028822.11, intron 2 of 6) protein_coding-intron (ENSMUSG00000028822.11, intron 2 of 6) 3714 ENSMUSG00000028822.11 ENSMUSG00000028822 ENSMUST00000105863 Tmem50a protein_coding Interval_91356 chr2 38183746 38184972 + 0 NA intron (ENSMUSG00000035392.17, intron 2 of 5) protein_coding-intron (ENSMUSG00000035392.17, intron 2 of 21) -16540 ENSMUSG00000035392.17 ENSMUSG00000035392 ENSMUST00000128492 Dennd1a protein_coding Interval_27665 chr11 69371294 69371954 + 0 NA Intergenic Intergenic -20963 ENSMUSG00000087881.1 ENSMUSG00000087881 ENSMUST00000157256 Gm22442 scaRNA Interval_130657 chr5 129515838 129516638 + 0 NA intron (ENSMUSG00000029439.14, intron 7 of 15) protein_coding-intron (ENSMUSG00000029439.14, intron 7 of 17) 11897 ENSMUSG00000029439.14 ENSMUSG00000029439 ENSMUST00000196873 Sfswap protein_coding Interval_77620 chr17 93166233 93166658 + 0 NA Intergenic Intergenic -2067 ENSMUSG00000117591.1 ENSMUSG00000117591 ENSMUST00000234088 Gm49997 processed_pseudogene Interval_67542 chr16 50484209 50484764 + 0 NA Intergenic Intergenic -41759 ENSMUSG00000097694.8 ENSMUSG00000097694 ENSMUST00000181884 G730013B05Rik lincRNA Interval_84971 chr19 20764177 20764636 + 0 NA Intergenic Intergenic -36844 ENSMUSG00000024747.3 ENSMUSG00000024747 ENSMUST00000025656 Aldh1a7 protein_coding Interval_147635 chr7 70378917 70380809 + 0 NA intron (ENSMUSG00000101559.1, intron 2 of 3) lincRNA-intron (ENSMUSG00000101559.1, intron 2 of 3) 8547 ENSMUSG00000101559.1 ENSMUSG00000101559 ENSMUST00000189033 Gm28258 lincRNA Interval_81548 chr18 61626135 61629043 + 0 NA Intergenic Intergenic -12064 ENSMUSG00000098098.7 ENSMUSG00000098098 ENSMUST00000183087 Bvht lincRNA Interval_49752 chr13 114517161 114517348 + 0 NA Intergenic Intergenic 58591 ENSMUSG00000114935.1 ENSMUSG00000114935 ENSMUST00000225706 Gm47040 antisense Interval_171095 chr9 114511020 114511248 + 0 NA exon (ENSMUSG00000079259.2, exon 4 of 4) protein_coding-exon (ENSMUSG00000079259.2, exon 4 of 4) -4563 ENSMUSG00000097821.2 ENSMUSG00000097821 ENSMUST00000238379 C130032M10Rik antisense Interval_136416 chr6 54263336 54264095 + 0 NA intron (ENSMUSG00000086946.7, intron 1 of 4) protein_coding-intron (ENSMUSG00000004633.17, intron 6 of 12) -8804 ENSMUSG00000086946.7 ENSMUSG00000086946 ENSMUST00000144094 Gm15527 processed_transcript Interval_65831 chr16 29627911 29628117 + 0 NA intron (ENSMUSG00000038084.16, intron 25 of 28) protein_coding-intron (ENSMUSG00000038084.16, intron 25 of 29) 41000 ENSMUSG00000038084.16 ENSMUSG00000038084 ENSMUST00000160101 Opa1 protein_coding Interval_127344 chr5 103282632 103283407 + 0 NA intron (ENSMUSG00000104956.1, intron 3 of 6) lincRNA-intron (ENSMUSG00000104956.1, intron 3 of 6) 9110 ENSMUSG00000104688.1 ENSMUSG00000104688 ENSMUST00000196923 Gm18702 processed_pseudogene Interval_55577 chr14 93214802 93216729 + 0 NA intron (ENSMUSG00000055421.8, intron 3 of 3) protein_coding-intron (ENSMUSG00000055421.8, intron 3 of 3) -12864 ENSMUSG00000115632.1 ENSMUSG00000115632 ENSMUST00000226234 Gm17922 processed_pseudogene Interval_170869 chr9 111373294 111373576 + 0 NA exon (ENSMUSG00000062296.8, exon 13 of 22) protein_coding-exon (ENSMUSG00000062296.8, exon 13 of 22) -1453 ENSMUSG00000062296.8 ENSMUSG00000062296 ENSMUST00000197650 Trank1 protein_coding Interval_62070 chr15 86200999 86201564 + 0 NA Intergenic Intergenic 11376 ENSMUSG00000088071.1 ENSMUSG00000088071 ENSMUST00000157446 Gm22818 snRNA Interval_69680 chr16 95432093 95432356 + 0 NA intron (ENSMUSG00000040732.20, intron 2 of 10) protein_coding-intron (ENSMUSG00000040732.20, intron 2 of 9) -76548 ENSMUSG00000116720.1 ENSMUSG00000116720 ENSMUST00000232605 Gm31641 antisense Interval_24093 chr11 30186855 30187444 + 0 NA intron (ENSMUSG00000020315.18, intron 2 of 30) protein_coding-intron (ENSMUSG00000020315.18, intron 2 of 35) -80315 ENSMUSG00000073073.4 ENSMUSG00000073073 ENSMUST00000146985 Gm8098 processed_transcript Interval_170960 chr9 113299162 113299703 + 0 NA intron (ENSMUSG00000111022.1, intron 2 of 3) lincRNA-intron (ENSMUSG00000111022.1, intron 2 of 3) 11725 ENSMUSG00000111022.1 ENSMUSG00000111022 ENSMUST00000217623 Gm36367 lincRNA Interval_57857 chr15 23403462 23404814 + 0 NA intron (ENSMUSG00000115560.1, intron 2 of 2) protein_coding-intron (ENSMUSG00000040420.15, intron 7 of 9) 10319 ENSMUSG00000115560.1 ENSMUSG00000115560 ENSMUST00000226326 Gm49191 antisense Interval_9659 chr1 160808830 160809751 + 0 NA Intergenic Intergenic 10608 ENSMUSG00000102852.1 ENSMUSG00000102852 ENSMUST00000195784 Gm37083 lincRNA Interval_168013 chr9 75401860 75402868 + 0 NA intron (ENSMUSG00000042688.16, intron 1 of 2) protein_coding-intron (ENSMUSG00000042688.16, intron 1 of 5) -4757 ENSMUSG00000042688.16 ENSMUSG00000042688 ENSMUST00000172665 Mapk6 protein_coding Interval_82218 chr18 69343862 69344737 + 0 NA promoter-TSS (ENSMUSG00000053477.17) protein_coding-promoter-TSS (ENSMUSG00000053477.17) 88011 ENSMUSG00000098060.1 ENSMUSG00000098060 ENSMUST00000183237 Gm4842 processed_pseudogene Interval_107078 chr3 103366562 103367536 + 0 NA Intergenic Intergenic -25884 ENSMUSG00000089029.1 ENSMUSG00000089029 ENSMUST00000158404 Gm25009 snoRNA Interval_140940 chr6 122882728 122883454 + 0 NA TTS (ENSMUSG00000030327.8) protein_coding-TTS (ENSMUSG00000030327.8) 8542 ENSMUSG00000030327.8 ENSMUSG00000030327 ENSMUST00000203476 Necap1 protein_coding Interval_63984 chr16 5001721 5002908 + 0 NA Intergenic Intergenic -4551 ENSMUSG00000022542.7 ENSMUSG00000022542 ENSMUST00000230878 Septin12 protein_coding Interval_66047 chr16 31192069 31193212 + 0 NA intron (ENSMUSG00000049076.12, intron 1 of 23) protein_coding-intron (ENSMUSG00000049076.12, intron 1 of 21) 34770 ENSMUSG00000116943.1 ENSMUSG00000116943 ENSMUST00000231868 Gm18237 processed_pseudogene Interval_77197 chr17 87301976 87302365 + 0 NA intron (ENSMUSG00000036918.16, intron 2 of 18) protein_coding-intron (ENSMUSG00000036918.16, intron 3 of 19) 19222 ENSMUSG00000036918.16 ENSMUSG00000036918 ENSMUST00000148126 Ttc7 protein_coding Interval_145641 chr7 36661675 36662052 + 0 NA Intergenic Intergenic -33575 ENSMUSG00000104330.1 ENSMUSG00000104330 ENSMUST00000192928 Gm38285 TEC Interval_123932 chr5 36695233 36696688 + 0 NA promoter-TSS (ENSMUSG00000029190.19) protein_coding-promoter-TSS (ENSMUSG00000029190.19) 10 ENSMUSG00000029190.19 ENSMUSG00000029190 ENSMUST00000202510 D5Ertd579e protein_coding Interval_92286 chr2 58324346 58324948 + 0 NA intron (ENSMUSG00000026834.13, intron 1 of 3) protein_coding-intron (ENSMUSG00000026834.13, intron 1 of 8) 160 ENSMUSG00000026834.13 ENSMUSG00000026834 ENSMUST00000154453 Acvr1c protein_coding Interval_153320 chr7 143599454 143600584 + 0 NA promoter-TSS (ENSMUSG00000010755.17) protein_coding-promoter-TSS (ENSMUSG00000010755.17) -115 ENSMUSG00000086828.1 ENSMUSG00000086828 ENSMUST00000141299 Gm15579 antisense Interval_64106 chr16 8409009 8409803 + 0 NA exon (ENSMUSG00000022715.3, exon 4 of 4) protein_coding-exon (ENSMUSG00000022715.3, exon 4 of 4) 6592 ENSMUSG00000077152.1 ENSMUSG00000077152 ENSMUST00000103964 Gm24579 snoRNA Interval_130207 chr5 124943234 124944596 + 0 NA Intergenic Intergenic -59560 ENSMUSG00000037962.7 ENSMUSG00000037962 ENSMUST00000145946 Rflna protein_coding Interval_52003 chr14 34548386 34549779 + 0 NA intron (ENSMUSG00000021798.14, intron 9 of 13) protein_coding-intron (ENSMUSG00000021798.14, intron 9 of 13) -26281 ENSMUSG00000021797.2 ENSMUSG00000021797 ENSMUST00000022325 9230112D13Rik protein_coding Interval_163326 chr9 20887775 20888897 + 0 NA promoter-TSS (ENSMUSG00000004100.12) protein_coding-promoter-TSS (ENSMUSG00000004100.12) 60 ENSMUSG00000004100.12 ENSMUSG00000004100 ENSMUST00000153227 Ppan protein_coding Interval_135107 chr6 35395391 35396252 + 0 NA Intergenic Intergenic 64975 ENSMUSG00000107341.1 ENSMUSG00000107341 ENSMUST00000201560 1700065J11Rik lincRNA Interval_53608 chr14 59927655 59929928 + 0 NA intron (ENSMUSG00000021983.16, intron 23 of 35) protein_coding-intron (ENSMUSG00000021983.16, intron 23 of 35) 111700 ENSMUSG00000087286.1 ENSMUSG00000087286 ENSMUST00000132939 Gm9013 processed_pseudogene Interval_104310 chr3 63240752 63241665 + 0 NA promoter-TSS (ENSMUSG00000027820.12) protein_coding-promoter-TSS (ENSMUSG00000027820.12) -54058 ENSMUSG00000027820.12 ENSMUSG00000027820 ENSMUST00000193805 Mme protein_coding Interval_158862 chr8 87478987 87479266 + 0 NA intron (ENSMUSG00000097992.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000097248.9, intron 1 of 1) 5992 ENSMUSG00000097248.9 ENSMUSG00000097248 ENSMUST00000210170 Gm2694 lincRNA Interval_143065 chr6 149010481 149011096 + 0 NA intron (ENSMUSG00000030313.15, intron 14 of 20) protein_coding-intron (ENSMUSG00000030313.15, intron 14 of 20) 6873 ENSMUSG00000082633.1 ENSMUSG00000082633 ENSMUST00000117470 Gm15779 processed_pseudogene Interval_158158 chr8 79322190 79322491 + 0 NA Intergenic Intergenic 26972 ENSMUSG00000097174.2 ENSMUSG00000097174 ENSMUST00000209627 Gm4890 bidirectional_promoter_lncRNA Interval_111096 chr4 12008512 12008724 + 0 NA intron (ENSMUSG00000085027.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000085027.1, intron 1 of 1) 425 ENSMUSG00000085027.1 ENSMUSG00000085027 ENSMUST00000156947 Gm11840 lincRNA Interval_104406 chr3 65373701 65374888 + 0 NA intron (ENSMUSG00000027827.17, intron 13 of 13) protein_coding-intron (ENSMUSG00000027827.17, intron 13 of 13) 9087 ENSMUSG00000027828.12 ENSMUSG00000027828 ENSMUST00000119896 Ssr3 protein_coding Interval_24967 chr11 42210507 42211327 + 0 NA Intergenic Intergenic -28813 ENSMUSG00000010803.13 ENSMUSG00000010803 ENSMUST00000206085 Gabra1 protein_coding Interval_5834 chr1 92354868 92355538 + 0 NA Intergenic Intergenic 30693 ENSMUSG00000101265.1 ENSMUSG00000101265 ENSMUST00000187370 Gm29099 lincRNA Interval_158249 chr8 80551093 80551366 + 0 NA Intergenic Intergenic -36756 ENSMUSG00000086912.3 ENSMUSG00000086912 ENSMUST00000142188 4930505O20Rik antisense Interval_144087 chr7 19369746 19370793 + 0 NA TTS (ENSMUSG00000040734.14) protein_coding-TTS (ENSMUSG00000040734.14) 10520 ENSMUSG00000040734.14 ENSMUSG00000040734 ENSMUST00000132655 Ppp1r13l protein_coding Interval_67042 chr16 42021344 42023221 + 0 NA intron (ENSMUSG00000061080.11, intron 5 of 8) protein_coding-intron (ENSMUSG00000061080.11, intron 3 of 5) 162635 ENSMUSG00000116841.1 ENSMUSG00000116841 ENSMUST00000232237 Gm49737 processed_pseudogene Interval_99803 chr2 164997123 164998776 + 0 NA TTS (ENSMUSG00000017740.17) protein_coding-TTS (ENSMUSG00000017740.17) 29708 ENSMUSG00000017740.17 ENSMUSG00000017740 ENSMUST00000137302 Slc12a5 protein_coding Interval_125305 chr5 66081476 66084090 + 0 NA promoter-TSS (ENSMUSG00000070780.11) protein_coding-promoter-TSS (ENSMUSG00000070780.11) 1683 ENSMUSG00000107390.1 ENSMUSG00000107390 ENSMUST00000202328 Gm43323 TEC Interval_140318 chr6 116430493 116430803 + 0 NA intron (ENSMUSG00000025701.12, intron 3 of 11) protein_coding-intron (ENSMUSG00000025701.12, intron 3 of 13) 30376 ENSMUSG00000025701.12 ENSMUSG00000025701 ENSMUST00000167174 Alox5 protein_coding Interval_173691 chrX 101986455 101987254 + 0 NA intron (ENSMUSG00000079481.11, intron 1 of 1) protein_coding-intron (ENSMUSG00000079481.11, intron 1 of 7) 25057 ENSMUSG00000079481.11 ENSMUSG00000079481 ENSMUST00000129185 Nhsl2 protein_coding Interval_24413 chr11 33080260 33081195 + 0 NA TTS (ENSMUSG00000087318.1) lincRNA-TTS (ENSMUSG00000087318.1) 12176 ENSMUSG00000087318.1 ENSMUSG00000087318 ENSMUST00000147896 Gm12114 lincRNA Interval_137107 chr6 67471917 67472320 + 0 NA intron (ENSMUSG00000049093.9, intron 5 of 10) protein_coding-intron (ENSMUSG00000049093.9, intron 5 of 10) 19737 ENSMUSG00000049093.9 ENSMUSG00000049093 ENSMUST00000118364 Il23r protein_coding Interval_35697 chr12 28054240 28054615 + 0 NA Intergenic Intergenic 6101 ENSMUSG00000088937.1 ENSMUSG00000088937 ENSMUST00000158312 Gm25923 rRNA Interval_118716 chr4 133333514 133333779 + 0 NA intron (ENSMUSG00000037622.14, intron 2 of 5) protein_coding-intron (ENSMUSG00000037622.14, intron 1 of 15) -11416 ENSMUSG00000037622.14 ENSMUSG00000037622 ENSMUST00000140976 Wdtc1 protein_coding Interval_58602 chr15 36496264 36497134 + 0 NA promoter-TSS (ENSMUSG00000048307.8) protein_coding-promoter-TSS (ENSMUSG00000048307.8) 16 ENSMUSG00000048307.8 ENSMUSG00000048307 ENSMUST00000228941 Ankrd46 protein_coding Interval_129618 chr5 121375785 121376370 + 0 NA intron (ENSMUSG00000042726.14, intron 2 of 5) protein_coding-intron (ENSMUSG00000042726.14, intron 6 of 11) -2603 ENSMUSG00000042726.14 ENSMUSG00000042726 ENSMUST00000126550 Trafd1 protein_coding Interval_20109 chr10 114874808 114875036 + 0 NA promoter-TSS (ENSMUSG00000111883.1) lincRNA-promoter-TSS (ENSMUSG00000111883.1) -85 ENSMUSG00000111883.1 ENSMUSG00000111883 ENSMUST00000219061 Gm31182 lincRNA Interval_50292 chr14 11699852 11700324 + 0 NA intron (ENSMUSG00000021745.14, intron 1 of 3) protein_coding-intron (ENSMUSG00000021745.14, intron 1 of 29) -67855 ENSMUSG00000114310.1 ENSMUSG00000114310 ENSMUST00000225152 Gm48602 TEC Interval_72941 chr17 33677178 33677494 + 0 NA exon (ENSMUSG00000059208.15, exon 2 of 17) protein_coding-exon (ENSMUSG00000059208.15, exon 2 of 17) 8065 ENSMUSG00000059208.15 ENSMUSG00000059208 ENSMUST00000127598 Hnrnpm protein_coding Interval_44823 chr13 48928243 48928772 + 0 NA intron (ENSMUSG00000038014.7, intron 5 of 17) protein_coding-intron (ENSMUSG00000038014.7, intron 5 of 17) 39510 ENSMUSG00000038014.7 ENSMUSG00000038014 ENSMUST00000060805 Fam120a protein_coding Interval_110610 chr4 4638161 4638352 + 0 NA Intergenic Intergenic -91317 ENSMUSG00000095971.1 ENSMUSG00000095971 ENSMUST00000180325 Gm26436 snoRNA Interval_20123 chr10 115093035 115093438 + 0 NA intron (ENSMUSG00000006764.8, intron 8 of 10) protein_coding-intron (ENSMUSG00000006764.8, intron 8 of 10) 82322 ENSMUSG00000006764.8 ENSMUSG00000006764 ENSMUST00000155794 Tph2 protein_coding Interval_99117 chr2 157309186 157309961 + 0 NA intron (ENSMUSG00000027642.15, intron 9 of 16) protein_coding-intron (ENSMUSG00000027642.15, intron 8 of 16) 27630 ENSMUSG00000027642.15 ENSMUSG00000027642 ENSMUST00000149924 Rpn2 protein_coding Interval_88996 chr2 14139294 14140522 + 0 NA TTS (ENSMUSG00000026718.17) protein_coding-TTS (ENSMUSG00000026718.17) -9912 ENSMUSG00000103901.1 ENSMUSG00000103901 ENSMUST00000194683 Gm37499 TEC Interval_88202 chr19 60616666 60617621 + 0 NA intron (ENSMUSG00000117790.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000117790.1, intron 1 of 2) 5856 ENSMUSG00000117790.1 ENSMUSG00000117790 ENSMUST00000236155 Gm46652 lincRNA Interval_13223 chr10 13185988 13186233 + 0 NA intron (ENSMUSG00000019814.5, intron 3 of 5) protein_coding-intron (ENSMUSG00000019814.5, intron 3 of 10) 6318 ENSMUSG00000019814.5 ENSMUSG00000019814 ENSMUST00000219824 Ltv1 protein_coding Interval_148888 chr7 89856712 89856962 + 0 NA Intergenic Intergenic 29619 ENSMUSG00000109150.1 ENSMUSG00000109150 ENSMUST00000207900 Gm45793 TEC Interval_43975 chr13 38602375 38603706 + 0 NA exon (ENSMUSG00000038982.10, exon 5 of 5) protein_coding-exon (ENSMUSG00000038982.10, exon 5 of 5) -31931 ENSMUSG00000114830.1 ENSMUSG00000114830 ENSMUST00000224644 Gm47400 antisense Interval_171600 chr9 119465542 119465863 + 0 NA TTS (ENSMUSG00000042787.15) protein_coding-TTS (ENSMUSG00000042787.15) 20726 ENSMUSG00000042787.15 ENSMUSG00000042787 ENSMUST00000214462 Exog protein_coding Interval_145014 chr7 29430012 29432297 + 0 NA intron (ENSMUSG00000030583.16, intron 3 of 22) protein_coding-intron (ENSMUSG00000030583.16, intron 3 of 22) -53549 ENSMUSG00000030583.16 ENSMUSG00000030583 ENSMUST00000183085 Sipa1l3 protein_coding Interval_140603 chr6 120006213 120006495 + 0 NA TTS (ENSMUSG00000089936.1) processed_pseudogene-TTS (ENSMUSG00000089936.1) 356 ENSMUSG00000089936.1 ENSMUSG00000089936 ENSMUST00000160032 Gm16199 processed_pseudogene Interval_145844 chr7 40273395 40274459 + 0 NA Intergenic Intergenic 11222 ENSMUSG00000101153.1 ENSMUSG00000101153 ENSMUST00000190294 4933404I11Rik lincRNA Interval_158492 chr8 84038969 84039663 + 0 NA exon (ENSMUSG00000005465.9, exon 6 of 14) protein_coding-exon (ENSMUSG00000005465.9, exon 6 of 14) 3224 ENSMUSG00000005465.9 ENSMUSG00000005465 ENSMUST00000210790 Il27ra protein_coding Interval_36737 chr12 52782973 52783419 + 0 NA intron (ENSMUSG00000061603.8, intron 1 of 13) protein_coding-intron (ENSMUSG00000061603.8, intron 1 of 13) -12640 ENSMUSG00000061603.8 ENSMUSG00000061603 ENSMUST00000219786 Akap6 protein_coding Interval_53592 chr14 59646611 59647376 + 0 NA exon (ENSMUSG00000021983.16, exon 36 of 36) protein_coding-exon (ENSMUSG00000021983.16, exon 36 of 36) 4445 ENSMUSG00000114593.1 ENSMUSG00000114593 ENSMUST00000224256 Gm19716 transcribed_processed_pseudogene Interval_80461 chr18 42378611 42379813 + 0 NA Intergenic Intergenic -15863 ENSMUSG00000024497.4 ENSMUSG00000024497 ENSMUST00000237247 Pou4f3 protein_coding Interval_69511 chr16 93963793 93964090 + 0 NA intron (ENSMUSG00000047109.13, intron 1 of 2) protein_coding-intron (ENSMUSG00000047109.13, intron 1 of 2) 18647 ENSMUSG00000116681.1 ENSMUSG00000116681 ENSMUST00000232110 Gm49618 sense_intronic Interval_3808 chr1 63204163 63205207 + 0 NA intron (ENSMUSG00000086730.2, intron 1 of 1) protein_coding-intron (ENSMUSG00000046856.13, intron 2 of 2) 3977 ENSMUSG00000086730.2 ENSMUSG00000086730 ENSMUST00000189722 Platr12 processed_transcript Interval_62605 chr15 95436365 95436632 + 0 NA intron (ENSMUSG00000022454.17, intron 3 of 20) protein_coding-intron (ENSMUSG00000022454.17, intron 4 of 20) 91680 ENSMUSG00000022454.17 ENSMUSG00000022454 ENSMUST00000075275 Nell2 protein_coding Interval_153408 chr7 144481099 144481293 + 0 NA exon (ENSMUSG00000037519.17, exon 29 of 31) protein_coding-exon (ENSMUSG00000037519.17, exon 29 of 31) 5818 ENSMUSG00000037519.17 ENSMUSG00000037519 ENSMUST00000183106 Ppfia1 protein_coding Interval_174732 chrX 164284860 164285449 + 0 NA intron (ENSMUSG00000031379.13, intron 3 of 8) protein_coding-intron (ENSMUSG00000031379.13, intron 3 of 9) 2058 ENSMUSG00000077542.1 ENSMUSG00000077542 ENSMUST00000104354 Gm22023 snoRNA Interval_58876 chr15 39587498 39587763 + 0 NA intron (ENSMUSG00000037386.16, intron 2 of 2) protein_coding-intron (ENSMUSG00000037386.16, intron 21 of 26) 150392 ENSMUSG00000037386.16 ENSMUSG00000037386 ENSMUST00000226410 Rims2 protein_coding Interval_93633 chr2 75245935 75246579 + 0 NA intron (ENSMUSG00000100303.3, intron 2 of 5) lincRNA-intron (ENSMUSG00000100303.3, intron 2 of 5) 53980 ENSMUSG00000075276.5 ENSMUSG00000075276 ENSMUST00000122260 Gm13653 processed_pseudogene Interval_64426 chr16 11287130 11287609 + 0 NA Intergenic Intergenic -26443 ENSMUSG00000022496.5 ENSMUSG00000022496 ENSMUST00000023140 Tnfrsf17 protein_coding Interval_110291 chr3 156066615 156066822 + 0 NA Intergenic Intergenic 5827 ENSMUSG00000105949.1 ENSMUSG00000105949 ENSMUST00000195916 Gm6510 processed_pseudogene Interval_90855 chr2 32985407 32985931 + 0 NA TTS (ENSMUSG00000038860.15) protein_coding-TTS (ENSMUSG00000038860.15) -3598 ENSMUSG00000026791.14 ENSMUSG00000026791 ENSMUST00000123643 Slc2a8 protein_coding Interval_7569 chr1 132261178 132261349 + 0 NA Intergenic Intergenic 19148 ENSMUSG00000101549.1 ENSMUSG00000101549 ENSMUST00000185761 Gm29630 lincRNA Interval_11876 chr1 186657522 186657721 + 0 NA intron (ENSMUSG00000039239.14, intron 1 of 6) protein_coding-intron (ENSMUSG00000039239.14, intron 1 of 6) -19121 ENSMUSG00000089045.1 ENSMUSG00000089045 ENSMUST00000158420 Gm26169 snoRNA Interval_129640 chr5 121481962 121483158 + 0 NA TTS (ENSMUSG00000029452.18) protein_coding-TTS (ENSMUSG00000029452.18) -10172 ENSMUSG00000082760.2 ENSMUSG00000082760 ENSMUST00000122095 Gm15546 processed_pseudogene Interval_168465 chr9 81430293 81430705 + 0 NA Intergenic Intergenic -24898 ENSMUSG00000098429.1 ENSMUSG00000098429 ENSMUST00000184676 Gm27226 lincRNA Interval_1755 chr1 33564175 33564568 + 0 NA intron (ENSMUSG00000026134.11, intron 7 of 13) protein_coding-intron (ENSMUSG00000026134.11, intron 7 of 13) 52461 ENSMUSG00000102714.1 ENSMUSG00000102714 ENSMUST00000192891 Gm37618 TEC Interval_57372 chr15 10177049 10179777 + 0 NA intron (ENSMUSG00000005268.20, intron 1 of 10) protein_coding-intron (ENSMUSG00000005268.20, intron 1 of 8) -45573 ENSMUSG00000005268.20 ENSMUSG00000005268 ENSMUST00000127467 Prlr protein_coding Interval_164997 chr9 43777576 43778077 + 0 NA intron (ENSMUSG00000032012.9, intron 1 of 7) protein_coding-intron (ENSMUSG00000032012.9, intron 1 of 5) 33182 ENSMUSG00000032012.9 ENSMUSG00000032012 ENSMUST00000180221 Nectin1 protein_coding Interval_95928 chr2 118494901 118495464 + 0 NA Intergenic Intergenic -11005 ENSMUSG00000084028.1 ENSMUSG00000084028 ENSMUST00000118018 Gm13983 processed_pseudogene Interval_138473 chr6 88499417 88500599 + 0 NA Intergenic Intergenic -3597 ENSMUSG00000107659.1 ENSMUSG00000107659 ENSMUST00000203181 Gm44170 antisense Interval_50790 chr14 19860063 19861904 + 0 NA Intergenic Intergenic -5997 ENSMUSG00000114436.1 ENSMUSG00000114436 ENSMUST00000224546 Gm48283 lincRNA Interval_97363 chr2 135470753 135471756 + 0 NA intron (ENSMUSG00000051177.16, intron 32 of 32) protein_coding-intron (ENSMUSG00000051177.16, intron 31 of 31) 112330 ENSMUSG00000085631.1 ENSMUSG00000085631 ENSMUST00000129868 9630028H03Rik antisense Interval_81457 chr18 60874139 60874365 + 0 NA Intergenic Intergenic -25806 ENSMUSG00000024613.16 ENSMUSG00000024613 ENSMUST00000177343 Tcof1 protein_coding Interval_93939 chr2 79634878 79636174 + 0 NA promoter-TSS (ENSMUSG00000027007.16) protein_coding-promoter-TSS (ENSMUSG00000027007.16) -3656 ENSMUSG00000027007.16 ENSMUSG00000027007 ENSMUST00000133266 Itprid2 protein_coding Interval_14523 chr10 34810281 34810731 + 0 NA Intergenic Intergenic -70902 ENSMUSG00000111042.1 ENSMUSG00000111042 ENSMUST00000215855 Gm18252 transcribed_processed_pseudogene Interval_13810 chr10 22781682 22781989 + 0 NA Intergenic Intergenic -9484 ENSMUSG00000112727.1 ENSMUSG00000112727 ENSMUST00000220252 Gm17794 processed_pseudogene Interval_172315 chrX 12916610 12917642 + 0 NA Intergenic Intergenic -2534 ENSMUSG00000083760.1 ENSMUSG00000083760 ENSMUST00000121066 Gm14524 processed_pseudogene Interval_154063 chr8 12420459 12421010 + 0 NA intron (ENSMUSG00000047935.17, intron 1 of 6) sense_overlapping-intron (ENSMUSG00000047935.17, intron 1 of 8) 24331 ENSMUSG00000092656.1 ENSMUSG00000092656 ENSMUST00000174915 Gm25239 miRNA Interval_32404 chr11 107372598 107372841 + 0 NA intron (ENSMUSG00000040430.18, intron 1 of 9) protein_coding-intron (ENSMUSG00000040430.18, intron 1 of 9) -14264 ENSMUSG00000087683.1 ENSMUSG00000087683 ENSMUST00000129139 Gm11712 antisense Interval_50588 chr14 16144077 16145292 + 0 NA Intergenic Intergenic -26713 ENSMUSG00000114484.1 ENSMUSG00000114484 ENSMUST00000225492 Gm8517 processed_pseudogene Interval_13893 chr10 24331487 24333660 + 0 NA Intergenic Intergenic 109028 ENSMUSG00000020000.7 ENSMUSG00000020000 ENSMUST00000154916 Moxd1 protein_coding Interval_70654 chr17 12838019 12838314 + 0 NA intron (ENSMUSG00000078247.5, intron 1 of 2) antisense-intron (ENSMUSG00000078247.5, intron 1 of 2) 16294 ENSMUSG00000068037.11 ENSMUSG00000068037 ENSMUST00000159865 Mas1 protein_coding Interval_130495 chr5 128391203 128391407 + 0 NA intron (ENSMUSG00000034310.8, intron 1 of 8) protein_coding-intron (ENSMUSG00000034310.8, intron 1 of 8) -53111 ENSMUSG00000106275.1 ENSMUSG00000106275 ENSMUST00000200324 Gm42495 lincRNA Interval_56643 chr14 121104765 121105545 + 0 NA intron (ENSMUSG00000025555.14, intron 1 of 7) protein_coding-intron (ENSMUSG00000025555.14, intron 2 of 26) 3076 ENSMUSG00000025555.14 ENSMUSG00000025555 ENSMUST00000137971 Farp1 protein_coding Interval_99862 chr2 165367221 165368592 + 0 NA intron (ENSMUSG00000056824.15, intron 1 of 5) protein_coding-intron (ENSMUSG00000056824.15, intron 1 of 5) 817 ENSMUSG00000056824.15 ENSMUSG00000056824 ENSMUST00000141140 Zfp663 protein_coding Interval_164634 chr9 40215457 40215727 + 0 NA Intergenic Intergenic 23263 ENSMUSG00000025602.13 ENSMUSG00000025602 ENSMUST00000168832 Zfp202 protein_coding Interval_119342 chr4 136993944 136994330 + 0 NA intron (ENSMUSG00000060862.10, intron 13 of 18) protein_coding-intron (ENSMUSG00000060862.10, intron 13 of 18) -2475 ENSMUSG00000060862.10 ENSMUSG00000060862 ENSMUST00000145505 Zbtb40 protein_coding Interval_96651 chr2 126789111 126789354 + 0 NA Intergenic Intergenic -5774 ENSMUSG00000027364.14 ENSMUSG00000027364 ENSMUST00000151140 Usp50 protein_coding Interval_165635 chr9 50560528 50561616 + 0 NA intron (ENSMUSG00000032065.6, intron 1 of 4) protein_coding-intron (ENSMUSG00000032065.6, intron 1 of 4) 253 ENSMUSG00000032065.6 ENSMUSG00000032065 ENSMUST00000034568 Tex12 protein_coding Interval_86419 chr19 40345536 40346292 + 0 NA intron (ENSMUSG00000025006.18, intron 16 of 29) protein_coding-intron (ENSMUSG00000025006.18, intron 11 of 21) 30960 ENSMUSG00000025006.18 ENSMUSG00000025006 ENSMUST00000225293 Sorbs1 protein_coding Interval_81990 chr18 66964083 66964983 + 0 NA Intergenic Intergenic -9632 ENSMUSG00000117798.1 ENSMUSG00000117798 ENSMUST00000237275 Gm50164 lincRNA Interval_77079 chr17 86310902 86311223 + 0 NA intron (ENSMUSG00000045038.14, intron 1 of 14) protein_coding-intron (ENSMUSG00000045038.14, intron 2 of 15) -23884 ENSMUSG00000100738.1 ENSMUSG00000100738 ENSMUST00000191222 2010106C02Rik antisense Interval_27801 chr11 70068100 70069313 + 0 NA Intergenic Intergenic 14621 ENSMUSG00000020884.15 ENSMUSG00000020884 ENSMUST00000123369 Asgr1 protein_coding Interval_47367 chr13 82058042 82058321 + 0 NA Intergenic Intergenic 7430 ENSMUSG00000088923.1 ENSMUSG00000088923 ENSMUST00000158298 Gm24295 snoRNA Interval_39443 chr12 87428888 87429087 + 0 NA TTS (ENSMUSG00000079036.10) protein_coding-TTS (ENSMUSG00000079036.10) 8476 ENSMUSG00000114103.1 ENSMUSG00000114103 ENSMUST00000220777 Gm8557 processed_pseudogene Interval_118934 chr4 134540563 134541176 + 0 NA exon (ENSMUSG00000050989.9, exon 10 of 12) protein_coding-exon (ENSMUSG00000050989.9, exon 10 of 12) 153 ENSMUSG00000050989.9 ENSMUSG00000050989 ENSMUST00000127585 Selenon protein_coding Interval_29557 chr11 84891921 84892203 + 0 NA intron (ENSMUSG00000020527.14, intron 5 of 21) protein_coding-intron (ENSMUSG00000020527.14, intron 5 of 5) -1025 ENSMUSG00000092644.1 ENSMUSG00000092644 ENSMUST00000174903 Gm23564 miRNA Interval_108482 chr3 127552942 127553868 + 0 NA promoter-TSS (ENSMUSG00000027968.11) protein_coding-promoter-TSS (ENSMUSG00000027968.11) -84 ENSMUSG00000051278.12 ENSMUSG00000051278 ENSMUST00000197108 Zgrf1 protein_coding Interval_20989 chr10 123069655 123069907 + 0 NA intron (ENSMUSG00000034602.15, intron 1 of 9) protein_coding-intron (ENSMUSG00000034602.15, intron 1 of 33) -39462 ENSMUSG00000034602.15 ENSMUSG00000034602 ENSMUST00000219203 Mon2 protein_coding Interval_79450 chr18 31971336 31971605 + 0 NA intron (ENSMUSG00000024388.11, intron 31 of 46) protein_coding-intron (ENSMUSG00000024388.11, intron 31 of 46) 11898 ENSMUSG00000024388.11 ENSMUSG00000024388 ENSMUST00000238990 Myo7b protein_coding Interval_62083 chr15 86282819 86284556 + 0 NA intron (ENSMUSG00000051864.10, intron 3 of 3) protein_coding-intron (ENSMUSG00000051864.10, intron 4 of 12) 48182 ENSMUSG00000051864.10 ENSMUSG00000051864 ENSMUST00000229242 Tbc1d22a protein_coding Interval_82080 chr18 67610219 67611403 + 0 NA promoter-TSS (ENSMUSG00000024533.17) protein_coding-promoter-TSS (ENSMUSG00000024533.17) 28178 ENSMUSG00000073542.3 ENSMUSG00000073542 ENSMUST00000237975 Cep76 protein_coding Interval_174269 chrX 142715083 142715497 + 0 NA intron (ENSMUSG00000047045.17, intron 2 of 8) protein_coding-intron (ENSMUSG00000047045.17, intron 2 of 6) -23710 ENSMUSG00000076011.1 ENSMUSG00000076011 ENSMUST00000102057 Mir652 miRNA Interval_121853 chr5 8847223 8849507 + 0 NA promoter-TSS (ENSMUSG00000028970.9) protein_coding-promoter-TSS (ENSMUSG00000028970.9) -3022 ENSMUSG00000028970.9 ENSMUSG00000028970 ENSMUST00000196048 Abcb1b protein_coding Interval_161135 chr8 117697400 117697675 + 0 NA Intergenic Intergenic -15033 ENSMUSG00000110520.1 ENSMUSG00000110520 ENSMUST00000212366 Gm45776 TEC Interval_99981 chr2 166220790 166221056 + 0 NA Intergenic Intergenic -12296 ENSMUSG00000085046.1 ENSMUSG00000085046 ENSMUST00000129407 Gm11467 lincRNA Interval_107021 chr3 103011289 103012109 + 0 NA Intergenic Intergenic 15523 ENSMUSG00000027854.12 ENSMUSG00000027854 ENSMUST00000196827 Sike1 protein_coding Interval_54178 chr14 65991011 65991344 + 0 NA exon (ENSMUSG00000034450.8, exon 9 of 12) protein_coding-exon (ENSMUSG00000034450.8, exon 9 of 12) 18030 ENSMUSG00000034450.8 ENSMUSG00000034450 ENSMUST00000059970 Gulo protein_coding Interval_25604 chr11 50174297 50175437 + 0 NA promoter-TSS (ENSMUSG00000020381.10) protein_coding-promoter-TSS (ENSMUSG00000020381.10) 423 ENSMUSG00000020381.10 ENSMUSG00000020381 ENSMUST00000123164 Mrnip protein_coding Interval_151311 chr7 120917425 120918797 + 0 NA intron (ENSMUSG00000030880.14, intron 1 of 19) protein_coding-intron (ENSMUSG00000030880.14, intron 1 of 20) -16719 ENSMUSG00000030880.14 ENSMUSG00000030880 ENSMUST00000209014 Polr3e protein_coding Interval_69810 chr16 96819614 96820682 + 0 NA intron (ENSMUSG00000050272.10, intron 7 of 32) protein_coding-intron (ENSMUSG00000050272.10, intron 7 of 32) 96636 ENSMUSG00000117000.1 ENSMUSG00000117000 ENSMUST00000233368 Gm32509 processed_transcript Interval_21145 chr10 126878145 126878372 + 0 NA intron (ENSMUSG00000025436.12, intron 5 of 5) protein_coding-intron (ENSMUSG00000025436.12, intron 5 of 5) -14855 ENSMUSG00000112423.1 ENSMUSG00000112423 ENSMUST00000218775 Gm6333 processed_pseudogene Interval_111745 chr4 27165900 27166139 + 0 NA Intergenic Intergenic -39510 ENSMUSG00000083447.1 ENSMUSG00000083447 ENSMUST00000120562 Gm11904 processed_pseudogene Interval_159553 chr8 95421555 95421989 + 0 NA promoter-TSS (ENSMUSG00000031796.7) protein_coding-promoter-TSS (ENSMUSG00000031796.7) 13072 ENSMUSG00000031796.7 ENSMUSG00000031796 ENSMUST00000212131 Cfap20 protein_coding Interval_1805 chr1 33892381 33894118 + 0 NA intron (ENSMUSG00000042182.16, intron 1 of 2) protein_coding-intron (ENSMUSG00000042182.16, intron 1 of 6) -2132 ENSMUSG00000104416.1 ENSMUSG00000104416 ENSMUST00000195730 Gm37067 TEC Interval_138111 chr6 85250758 85251574 + 0 NA intron (ENSMUSG00000033720.12, intron 2 of 4) protein_coding-intron (ENSMUSG00000033720.12, intron 10 of 13) 57647 ENSMUSG00000033726.8 ENSMUSG00000033726 ENSMUST00000173919 Emx1 protein_coding Interval_99790 chr2 164924327 164924919 + 0 NA Intergenic Intergenic 10533 ENSMUSG00000085436.1 ENSMUSG00000085436 ENSMUST00000142338 Zfp335os antisense Interval_46027 chr13 60358332 60359202 + 0 NA Intergenic Intergenic 27318 ENSMUSG00000114460.1 ENSMUSG00000114460 ENSMUST00000225199 Gm10779 TEC Interval_22630 chr11 12393801 12395105 + 0 NA intron (ENSMUSG00000020173.17, intron 1 of 11) protein_coding-intron (ENSMUSG00000020173.17, intron 1 of 14) 17691 ENSMUSG00000020173.17 ENSMUSG00000020173 ENSMUST00000146067 Cobl protein_coding Interval_57511 chr15 11995163 11996331 + 0 NA promoter-TSS (ENSMUSG00000022205.15) protein_coding-promoter-TSS (ENSMUSG00000022205.15) 3 ENSMUSG00000022205.15 ENSMUSG00000022205 ENSMUST00000134414 Sub1 protein_coding Interval_145347 chr7 34145619 34145842 + 0 NA intron (ENSMUSG00000052997.15, intron 1 of 2) protein_coding-intron (ENSMUSG00000052997.15, intron 14 of 16) -17693 ENSMUSG00000036459.15 ENSMUSG00000036459 ENSMUST00000140911 Wtip protein_coding Interval_15888 chr10 58853960 58854430 + 0 NA intron (ENSMUSG00000037990.18, intron 1 of 9) protein_coding-intron (ENSMUSG00000037990.18, intron 1 of 2) 40737 ENSMUSG00000037990.18 ENSMUSG00000037990 ENSMUST00000152924 Sh3rf3 protein_coding Interval_104282 chr3 62603022 62604508 + 0 NA promoter-TSS (ENSMUSG00000043441.5) protein_coding-promoter-TSS (ENSMUSG00000043441.5) -991 ENSMUSG00000043441.5 ENSMUSG00000043441 ENSMUST00000149007 Gpr149 protein_coding Interval_164899 chr9 42906038 42906558 + 0 NA intron (ENSMUSG00000032017.14, intron 1 of 20) protein_coding-intron (ENSMUSG00000032017.14, intron 1 of 20) 38195 ENSMUSG00000032017.14 ENSMUSG00000032017 ENSMUST00000034515 Grik4 protein_coding Interval_105144 chr3 82547748 82549024 + 0 NA promoter-TSS (ENSMUSG00000028004.12) protein_coding-promoter-TSS (ENSMUSG00000028004.12) -426 ENSMUSG00000028004.12 ENSMUSG00000028004 ENSMUST00000182831 Npy2r protein_coding Interval_147902 chr7 75369517 75369844 + 0 NA Intergenic Intergenic 3625 ENSMUSG00000069196.6 ENSMUSG00000069196 ENSMUST00000091506 Gm10161 processed_pseudogene Interval_80935 chr18 50574121 50574291 + 0 NA intron (ENSMUSG00000048875.3, intron 2 of 3) protein_coding-intron (ENSMUSG00000048875.3, intron 2 of 3) 27213 ENSMUSG00000048875.3 ENSMUSG00000048875 ENSMUST00000056460 Pudp protein_coding Interval_8283 chr1 136919372 136919615 + 0 NA intron (ENSMUSG00000026398.14, intron 6 of 8) protein_coding-intron (ENSMUSG00000026398.14, intron 6 of 8) 29680 ENSMUSG00000026398.14 ENSMUSG00000026398 ENSMUST00000195428 Nr5a2 protein_coding Interval_23552 chr11 23318585 23318801 + 0 NA intron (ENSMUSG00000056342.16, intron 1 of 79) protein_coding-intron (ENSMUSG00000056342.16, intron 1 of 79) 11798 ENSMUSG00000056342.16 ENSMUSG00000056342 ENSMUST00000125701 Usp34 protein_coding Interval_91618 chr2 44779944 44781986 + 0 NA intron (ENSMUSG00000036890.13, intron 3 of 3) protein_coding-intron (ENSMUSG00000036890.13, intron 3 of 10) -7300 ENSMUSG00000083849.1 ENSMUSG00000083849 ENSMUST00000121620 Gm13477 processed_pseudogene Interval_99755 chr2 164723212 164723849 + 0 NA Intergenic Intergenic 8225 ENSMUSG00000074593.11 ENSMUSG00000074593 ENSMUST00000180193 Spint5 protein_coding Interval_32311 chr11 106824364 106824570 + 0 NA TTS (ENSMUSG00000018363.16) protein_coding-TTS (ENSMUSG00000018363.16) 6633 ENSMUSG00000018372.13 ENSMUSG00000018372 ENSMUST00000124898 Cep95 protein_coding Interval_153442 chr7 144828188 144828761 + 0 NA Intergenic Intergenic -9609 ENSMUSG00000031074.14 ENSMUSG00000031074 ENSMUST00000105898 Fgf3 protein_coding Interval_95630 chr2 113196219 113196580 + 0 NA intron (ENSMUSG00000057378.15, intron 1 of 103) protein_coding-intron (ENSMUSG00000057378.15, intron 1 of 102) -89333 ENSMUSG00000041255.2 ENSMUSG00000041255 ENSMUST00000040856 Tmco5b protein_coding Interval_43115 chr13 24280013 24281716 + 0 NA promoter-TSS (ENSMUSG00000021338.17) protein_coding-promoter-TSS (ENSMUSG00000021338.17) 10941 ENSMUSG00000083409.1 ENSMUSG00000083409 ENSMUST00000119226 Gm11340 processed_pseudogene Interval_1358 chr1 20942988 20943288 + 0 NA Intergenic Intergenic -2573 ENSMUSG00000100929.1 ENSMUSG00000100929 ENSMUST00000185639 Gm28064 processed_pseudogene Interval_103608 chr3 51156755 51157532 + 0 NA Intergenic Intergenic 53483 ENSMUSG00000103464.1 ENSMUSG00000103464 ENSMUST00000194318 Gm38246 lincRNA Interval_32385 chr11 107270667 107271080 + 0 NA intron (ENSMUSG00000040430.18, intron 5 of 7) protein_coding-intron (ENSMUSG00000040430.18, intron 4 of 7) -59835 ENSMUSG00000081995.1 ENSMUSG00000081995 ENSMUST00000119399 Gm11719 processed_pseudogene Interval_83966 chr19 5840701 5843028 + 0 NA TTS (ENSMUSG00000092274.3) lincRNA-TTS (ENSMUSG00000092274.3) 2573 ENSMUSG00000098543.1 ENSMUSG00000098543 ENSMUST00000183800 Gm27533 misc_RNA Interval_54120 chr14 65495106 65495517 + 0 NA Intergenic Intergenic -70151 ENSMUSG00000045731.6 ENSMUSG00000045731 ENSMUST00000224594 Pnoc protein_coding Interval_22890 chr11 17135863 17136104 + 0 NA Intergenic Intergenic -40339 ENSMUSG00000082099.1 ENSMUSG00000082099 ENSMUST00000121971 Gm12013 processed_pseudogene Interval_25498 chr11 49260505 49262228 + 0 NA TTS (ENSMUSG00000020346.16) protein_coding-TTS (ENSMUSG00000020346.16) -16938 ENSMUSG00000059864.2 ENSMUSG00000059864 ENSMUST00000078932 Olfr1393 protein_coding Interval_93202 chr2 71124630 71125432 + 0 NA intron (ENSMUSG00000027015.4, intron 1 of 3) protein_coding-intron (ENSMUSG00000027015.4, intron 1 of 3) 7108 ENSMUSG00000027015.4 ENSMUSG00000027015 ENSMUST00000028403 Cybrd1 protein_coding Interval_57523 chr15 12084511 12085668 + 0 NA exon (ENSMUSG00000115441.1, exon 1 of 6) lincRNA-exon (ENSMUSG00000115441.1, exon 1 of 6) 108 ENSMUSG00000115441.1 ENSMUSG00000115441 ENSMUST00000227908 Gm34759 lincRNA Interval_96257 chr2 121017422 121017802 + 0 NA TTS (ENSMUSG00000023572.16) protein_coding-TTS (ENSMUSG00000023572.16) 9140 ENSMUSG00000023572.16 ENSMUSG00000023572 ENSMUST00000129717 Ccndbp1 protein_coding Interval_90295 chr2 29631715 29632219 + 0 NA intron (ENSMUSG00000039844.20, intron 1 of 24) protein_coding-intron (ENSMUSG00000039844.20, intron 1 of 25) -11848 ENSMUSG00000039844.20 ENSMUSG00000039844 ENSMUST00000123953 Rapgef1 protein_coding Interval_129540 chr5 120792825 120793560 + 0 NA intron (ENSMUSG00000066867.8, intron 1 of 3) protein_coding-intron (ENSMUSG00000066867.8, intron 2 of 5) 2311 ENSMUSG00000066867.8 ENSMUSG00000066867 ENSMUST00000200786 Oas1e protein_coding Interval_152319 chr7 131717940 131718127 + 0 NA intron (ENSMUSG00000030849.18, intron 2 of 6) protein_coding-intron (ENSMUSG00000030849.18, intron 2 of 6) -43151 ENSMUSG00000109066.1 ENSMUSG00000109066 ENSMUST00000207218 Gm4585 processed_pseudogene Interval_3813 chr1 63226007 63226278 + 0 NA Intergenic Intergenic -11919 ENSMUSG00000046856.13 ENSMUSG00000046856 ENSMUST00000187533 Gpr1 protein_coding Interval_45511 chr13 55555876 55556095 + 0 NA exon (ENSMUSG00000021495.10, exon 3 of 11) protein_coding-exon (ENSMUSG00000021495.10, exon 3 of 11) -12665 ENSMUSG00000021495.10 ENSMUSG00000021495 ENSMUST00000225262 Fam193b protein_coding Interval_107693 chr3 111141062 111141488 + 0 NA Intergenic Intergenic 32775 ENSMUSG00000106487.1 ENSMUSG00000106487 ENSMUST00000199816 Gm43407 processed_pseudogene Interval_125019 chr5 63917868 63918513 + 0 NA intron (ENSMUSG00000047881.14, intron 6 of 6) protein_coding-intron (ENSMUSG00000047881.14, intron 7 of 7) -5711 ENSMUSG00000087552.2 ENSMUSG00000087552 ENSMUST00000153089 Gm15819 antisense Interval_39096 chr12 85016560 85016788 + 0 NA intron (ENSMUSG00000021244.15, intron 4 of 19) protein_coding-intron (ENSMUSG00000021244.15, intron 4 of 20) -25553 ENSMUSG00000021244.15 ENSMUSG00000021244 ENSMUST00000166605 Ylpm1 protein_coding Interval_130390 chr5 127234690 127235749 + 0 NA Intergenic Intergenic -34122 ENSMUSG00000104778.1 ENSMUSG00000104778 ENSMUST00000197873 Gm43476 lincRNA Interval_46511 chr13 66735826 66737853 + 0 NA Intergenic Intergenic 4474 ENSMUSG00000114839.1 ENSMUSG00000114839 ENSMUST00000225542 Gm40989 processed_pseudogene Interval_162703 chr9 7924569 7924828 + 0 NA Intergenic Intergenic -41140 ENSMUSG00000092185.1 ENSMUSG00000092185 ENSMUST00000174760 Gm20416 processed_transcript Interval_20092 chr10 114166652 114167287 + 0 NA Intergenic Intergenic 71242 ENSMUSG00000112921.1 ENSMUSG00000112921 ENSMUST00000218197 Gm48104 TEC Interval_95023 chr2 103214999 103215659 + 0 NA Intergenic Intergenic -4972 ENSMUSG00000086957.1 ENSMUSG00000086957 ENSMUST00000146978 Gm13869 lincRNA Interval_81347 chr18 58664608 58665355 + 0 NA intron (ENSMUSG00000024601.9, intron 1 of 3) protein_coding-intron (ENSMUSG00000024601.9, intron 1 of 4) 5501 ENSMUSG00000024601.9 ENSMUSG00000024601 ENSMUST00000238139 Isoc1 protein_coding Interval_21164 chr10 126997373 126998379 + 0 NA promoter-TSS (ENSMUSG00000072837.1) miRNA-promoter-TSS (ENSMUSG00000072837.1) -564 ENSMUSG00000072837.1 ENSMUSG00000072837 ENSMUST00000102105 Mir546 miRNA Interval_122738 chr5 24986064 24987258 + 0 NA intron (ENSMUSG00000059631.6, intron 1 of 1) protein_coding-intron (ENSMUSG00000028944.14, intron 3 of 15) 819 ENSMUSG00000059631.6 ENSMUSG00000059631 ENSMUST00000075081 1500035N22Rik lincRNA Interval_4611 chr1 75443062 75443289 + 0 NA TTS (ENSMUSG00000033021.16) protein_coding-TTS (ENSMUSG00000033021.16) 6233 ENSMUSG00000033021.16 ENSMUSG00000033021 ENSMUST00000124539 Gmppa protein_coding Interval_81962 chr18 66455548 66455843 + 0 NA Intergenic Intergenic -2880 ENSMUSG00000024521.8 ENSMUSG00000024521 ENSMUST00000236933 Pmaip1 protein_coding Interval_38248 chr12 76635067 76635559 + 0 NA intron (ENSMUSG00000021061.15, intron 2 of 31) protein_coding-intron (ENSMUSG00000021061.15, intron 2 of 35) -51227 ENSMUSG00000021061.15 ENSMUSG00000021061 ENSMUST00000166101 Sptb protein_coding Interval_106971 chr3 102289776 102290492 + 0 NA intron (ENSMUSG00000105891.4, intron 2 of 4) lincRNA-intron (ENSMUSG00000105891.4, intron 2 of 4) 27612 ENSMUSG00000105891.4 ENSMUSG00000105891 ENSMUST00000196659 A230001M10Rik lincRNA Interval_38165 chr12 76094982 76095788 + 0 NA TTS (ENSMUSG00000063450.14) protein_coding-TTS (ENSMUSG00000063450.14) 57242 ENSMUSG00000046580.10 ENSMUSG00000046580 ENSMUST00000121461 Gm7862 processed_pseudogene Interval_168571 chr9 83657508 83657826 + 0 NA Intergenic Intergenic 29858 ENSMUSG00000111820.1 ENSMUSG00000111820 ENSMUST00000214393 Gm36120 lincRNA Interval_50411 chr14 12584750 12585496 + 0 NA intron (ENSMUSG00000054423.14, intron 6 of 28) protein_coding-intron (ENSMUSG00000054423.14, intron 6 of 28) -33545 ENSMUSG00000114453.1 ENSMUSG00000114453 ENSMUST00000225784 Gm17805 processed_pseudogene Interval_6236 chr1 103568297 103569167 + 0 NA Intergenic Intergenic -155613 ENSMUSG00000102325.1 ENSMUSG00000102325 ENSMUST00000192862 Gm37789 TEC Interval_24500 chr11 33764121 33765327 + 0 NA intron (ENSMUSG00000053519.17, intron 1 of 8) protein_coding-intron (ENSMUSG00000053519.17, intron 1 of 7) 59174 ENSMUSG00000087328.1 ENSMUSG00000087328 ENSMUST00000125068 Gm12120 antisense Interval_140097 chr6 114094112 114094815 + 0 NA Intergenic Intergenic 32267 ENSMUSG00000107474.1 ENSMUSG00000107474 ENSMUST00000204499 Gm43932 processed_pseudogene Interval_139808 chr6 108880919 108882002 + 0 NA promoter-TSS (ENSMUSG00000107751.1) processed_pseudogene-promoter-TSS (ENSMUSG00000107751.1) -544 ENSMUSG00000107751.1 ENSMUSG00000107751 ENSMUST00000203838 Gm6749 processed_pseudogene Interval_4803 chr1 79378423 79378647 + 0 NA Intergenic Intergenic 61507 ENSMUSG00000050711.7 ENSMUSG00000050711 ENSMUST00000049972 Scg2 protein_coding Interval_8249 chr1 136727517 136728699 + 0 NA Intergenic Intergenic 29501 ENSMUSG00000096432.1 ENSMUSG00000096432 ENSMUST00000175316 Gm22132 miRNA Interval_55636 chr14 97149342 97149849 + 0 NA Intergenic Intergenic -96627 ENSMUSG00000115229.1 ENSMUSG00000115229 ENSMUST00000228946 Gm33525 lincRNA Interval_2663 chr1 43098157 43099218 + 0 NA promoter-TSS (ENSMUSG00000010290.7) protein_coding-promoter-TSS (ENSMUSG00000010290.7) -23 ENSMUSG00000010290.7 ENSMUSG00000010290 ENSMUST00000010434 AI597479 protein_coding Interval_66288 chr16 32904943 32905162 + 0 NA intron (ENSMUSG00000022800.14, intron 7 of 7) protein_coding-intron (ENSMUSG00000022800.14, intron 8 of 8) -9070 ENSMUSG00000022801.13 ENSMUSG00000022801 ENSMUST00000142290 Lrch3 protein_coding Interval_28852 chr11 78783271 78783709 + 0 NA Intergenic Intergenic -28968 ENSMUSG00000080600.2 ENSMUSG00000080600 ENSMUST00000116950 Gm23840 miRNA Interval_39438 chr12 87410710 87411712 + 0 NA Intergenic Intergenic -9300 ENSMUSG00000114103.1 ENSMUSG00000114103 ENSMUST00000220777 Gm8557 processed_pseudogene Interval_81334 chr18 58209007 58211560 + 0 NA promoter-TSS (ENSMUSG00000024598.9) protein_coding-promoter-TSS (ENSMUSG00000024598.9) -357 ENSMUSG00000024598.9 ENSMUSG00000024598 ENSMUST00000235779 Fbn2 protein_coding Interval_42448 chr13 13647280 13647973 + 0 NA intron (ENSMUSG00000019726.12, intron 11 of 11) protein_coding-intron (ENSMUSG00000019726.12, intron 11 of 52) -36465 ENSMUSG00000019726.12 ENSMUSG00000019726 ENSMUST00000221587 Lyst protein_coding Interval_150905 chr7 116262190 116264613 + 0 NA intron (ENSMUSG00000045659.18, intron 3 of 18) protein_coding-intron (ENSMUSG00000045659.18, intron 3 of 26) 19342 ENSMUSG00000108650.1 ENSMUSG00000108650 ENSMUST00000205675 Gm44867 sense_intronic Interval_154377 chr8 15120661 15121298 + 0 NA intron (ENSMUSG00000031461.4, intron 2 of 9) protein_coding-intron (ENSMUSG00000031461.4, intron 28 of 36) 1972 ENSMUSG00000031461.4 ENSMUSG00000031461 ENSMUST00000140033 Myom2 protein_coding Interval_72913 chr17 33362301 33362707 + 0 NA intron (ENSMUSG00000055240.17, intron 5 of 5) protein_coding-intron (ENSMUSG00000055240.17, intron 5 of 5) -3636 ENSMUSG00000003929.11 ENSMUSG00000003929 ENSMUST00000235063 Zfp81 protein_coding Interval_64173 chr16 8836537 8837470 + 0 NA intron (ENSMUSG00000022507.6, intron 1 of 1) protein_coding-intron (ENSMUSG00000022507.6, intron 2 of 3) 5682 ENSMUSG00000022507.6 ENSMUSG00000022507 ENSMUST00000229318 1810013L24Rik protein_coding Interval_66242 chr16 32559263 32559961 + 0 NA intron (ENSMUSG00000052363.8, intron 3 of 3) protein_coding-intron (ENSMUSG00000052363.8, intron 3 of 3) 7870 ENSMUSG00000116957.1 ENSMUSG00000116957 ENSMUST00000232103 Gm34680 lincRNA Interval_70947 chr17 16637765 16638590 + 0 NA Intergenic Intergenic 32009 ENSMUSG00000116864.1 ENSMUSG00000116864 ENSMUST00000231447 Gm3320 processed_pseudogene Interval_133751 chr6 11342179 11342391 + 0 NA Intergenic Intergenic -367907 ENSMUSG00000107948.2 ENSMUSG00000107948 ENSMUST00000205141 AA545190 lincRNA Interval_164950 chr9 43327127 43327971 + 0 NA intron (ENSMUSG00000032013.6, intron 6 of 8) protein_coding-intron (ENSMUSG00000032013.6, intron 6 of 8) 8590 ENSMUSG00000032013.6 ENSMUSG00000032013 ENSMUST00000217067 Trim29 protein_coding Interval_110699 chr4 6561752 6563059 + 0 NA Intergenic Intergenic 22844 ENSMUSG00000081388.1 ENSMUSG00000081388 ENSMUST00000117807 Gm11801 processed_pseudogene Interval_153368 chr7 144071986 144072564 + 0 NA intron (ENSMUSG00000037541.22, intron 6 of 17) protein_coding-intron (ENSMUSG00000037541.22, intron 7 of 22) 38810 ENSMUSG00000109500.1 ENSMUSG00000109500 ENSMUST00000207456 Gm44999 TEC Interval_38486 chr12 79392998 79393474 + 0 NA intron (ENSMUSG00000059060.15, intron 1 of 2) protein_coding-intron (ENSMUSG00000059060.15, intron 7 of 7) 65883 ENSMUSG00000059060.15 ENSMUSG00000059060 ENSMUST00000221257 Rad51b protein_coding Interval_39289 chr12 86484232 86485006 + 0 NA intron (ENSMUSG00000021255.17, intron 1 of 5) protein_coding-intron (ENSMUSG00000021255.17, intron 2 of 6) 14502 ENSMUSG00000021255.17 ENSMUSG00000021255 ENSMUST00000136464 Esrrb protein_coding Interval_55411 chr14 86869278 86870178 + 0 NA intron (ENSMUSG00000022021.14, intron 20 of 26) protein_coding-intron (ENSMUSG00000022021.14, intron 20 of 27) 50983 ENSMUSG00000077948.2 ENSMUSG00000077948 ENSMUST00000104755 Gm23438 miRNA Interval_146853 chr7 53378113 53378616 + 0 NA Intergenic Intergenic 451294 ENSMUSG00000070203.1 ENSMUSG00000070203 ENSMUST00000093693 Gm22444 snRNA Interval_74821 chr17 56733182 56733832 + 0 NA promoter-TSS (ENSMUSG00000117146.2) transcribed_processed_pseudogene-promoter-TSS (ENSMUSG00000117146.2) -721 ENSMUSG00000117146.2 ENSMUSG00000117146 ENSMUST00000233424 Fut4-ps1 transcribed_processed_pseudogene Interval_103414 chr3 41400327 41400719 + 0 NA Intergenic Intergenic 40944 ENSMUSG00000089350.1 ENSMUSG00000089350 ENSMUST00000158725 Gm25487 snoRNA Interval_147151 chr7 63896382 63897636 + 0 NA promoter-TSS (ENSMUSG00000098708.7) processed_transcript-promoter-TSS (ENSMUSG00000098708.7) -965 ENSMUSG00000098708.7 ENSMUSG00000098708 ENSMUST00000184360 Gm27252 processed_transcript Interval_148746 chr7 85060490 85060696 + 0 NA intron (ENSMUSG00000092621.1, intron 2 of 2) unprocessed_pseudogene-intron (ENSMUSG00000092621.1, intron 2 of 2) 7518 ENSMUSG00000092621.1 ENSMUSG00000092621 ENSMUST00000173203 Vmn2r-ps66 unprocessed_pseudogene Interval_82754 chr18 76809304 76809587 + 0 NA Intergenic Intergenic -46960 ENSMUSG00000091519.1 ENSMUSG00000091519 ENSMUST00000166956 Skor2 protein_coding Interval_97670 chr2 142589541 142590554 + 0 NA Intergenic Intergenic 13119 ENSMUSG00000083215.3 ENSMUSG00000083215 ENSMUST00000119377 Rbmx2-ps processed_pseudogene Interval_104646 chr3 69069094 69070056 + 0 NA exon (ENSMUSG00000027782.10, exon 17 of 17) protein_coding-exon (ENSMUSG00000027782.10, exon 17 of 17) 15872 ENSMUSG00000089417.1 ENSMUSG00000089417 ENSMUST00000158792 Gm22009 scaRNA Interval_50948 chr14 20993244 20993792 + 0 NA intron (ENSMUSG00000021823.10, intron 6 of 7) protein_coding-intron (ENSMUSG00000021823.10, intron 6 of 20) 58677 ENSMUSG00000021824.13 ENSMUSG00000021824 ENSMUST00000130370 Ap3m1 protein_coding Interval_108740 chr3 130891473 130891759 + 0 NA intron (ENSMUSG00000106095.2, intron 1 of 2) lincRNA-intron (ENSMUSG00000106095.2, intron 1 of 2) 6765 ENSMUSG00000105628.1 ENSMUSG00000105628 ENSMUST00000196382 Gm43350 TEC Interval_60231 chr15 68574234 68574520 + 0 NA Intergenic Intergenic 37330 ENSMUSG00000116367.1 ENSMUSG00000116367 ENSMUST00000230783 Gm49414 processed_pseudogene Interval_157552 chr8 71385166 71386114 + 0 NA exon (ENSMUSG00000034911.8, exon 13 of 13) protein_coding-exon (ENSMUSG00000034911.8, exon 13 of 13) -9850 ENSMUSG00000002393.14 ENSMUSG00000002393 ENSMUST00000137058 Nr2f6 protein_coding Interval_169851 chr9 102492314 102492777 + 0 NA Intergenic Intergenic 5755 ENSMUSG00000111859.1 ENSMUSG00000111859 ENSMUST00000213941 Gm47983 TEC Interval_60128 chr15 65976547 65977563 + 0 NA promoter-TSS (ENSMUSG00000072511.3) protein_coding-promoter-TSS (ENSMUSG00000072511.3) -251 ENSMUSG00000072511.3 ENSMUSG00000072511 ENSMUST00000100584 Hhla1 protein_coding Interval_155574 chr8 34727572 34728430 + 0 NA Intergenic Intergenic -68632 ENSMUSG00000109846.1 ENSMUSG00000109846 ENSMUST00000210130 Gm45627 lincRNA Interval_88898 chr2 12377014 12378265 + 0 NA intron (ENSMUSG00000026767.12, intron 5 of 8) protein_coding-intron (ENSMUSG00000026767.12, intron 10 of 14) -2368 ENSMUSG00000104449.1 ENSMUSG00000104449 ENSMUST00000193302 Gm37255 TEC Interval_29692 chr11 86116232 86117511 + 0 NA intron (ENSMUSG00000034329.16, intron 14 of 19) protein_coding-intron (ENSMUSG00000034329.16, intron 14 of 19) -68458 ENSMUSG00000080823.1 ENSMUSG00000080823 ENSMUST00000121382 Atp5l-ps2 processed_pseudogene Interval_167331 chr9 67484976 67486415 + 0 NA intron (ENSMUSG00000052698.15, intron 1 of 57) protein_coding-intron (ENSMUSG00000052698.15, intron 1 of 57) 61192 ENSMUSG00000111412.1 ENSMUSG00000111412 ENSMUST00000216972 Gm47047 antisense Interval_98433 chr2 152323200 152323624 + 0 NA promoter-TSS (ENSMUSG00000027466.15) protein_coding-promoter-TSS (ENSMUSG00000027466.15) 86 ENSMUSG00000027466.15 ENSMUSG00000027466 ENSMUST00000129590 Rbck1 protein_coding Interval_97321 chr2 134088160 134088604 + 0 NA Intergenic Intergenic 465925 ENSMUSG00000027261.2 ENSMUSG00000027261 ENSMUST00000140794 Hao1 protein_coding Interval_100890 chr2 173184060 173184344 + 0 NA Intergenic Intergenic 31129 ENSMUSG00000027513.11 ENSMUSG00000027513 ENSMUST00000136885 Pck1 protein_coding Interval_154335 chr8 14710324 14710642 + 0 NA intron (ENSMUSG00000047495.15, intron 4 of 14) protein_coding-intron (ENSMUSG00000047495.15, intron 4 of 14) 36944 ENSMUSG00000084945.1 ENSMUSG00000084945 ENSMUST00000155211 C030037F17Rik antisense Interval_174012 chrX 129621972 129622666 + 0 NA Intergenic Intergenic -15863 ENSMUSG00000081874.1 ENSMUSG00000081874 ENSMUST00000121551 Gm14983 processed_pseudogene Interval_118429 chr4 131450051 131450902 + 0 NA Intergenic Intergenic -36721 ENSMUSG00000078531.3 ENSMUSG00000078531 ENSMUST00000149942 Gm831 lincRNA Interval_144097 chr7 19403651 19404358 + 0 NA promoter-TSS (ENSMUSG00000040714.14) protein_coding-promoter-TSS (ENSMUSG00000040714.14) -7021 ENSMUSG00000030399.2 ENSMUSG00000030399 ENSMUST00000003643 Ckm protein_coding Interval_126529 chr5 89674176 89675437 + 0 NA Intergenic Intergenic -7110 ENSMUSG00000084500.1 ENSMUSG00000084500 ENSMUST00000122551 Gm25320 misc_RNA Interval_38170 chr12 76136813 76137150 + 0 NA intron (ENSMUSG00000021055.14, intron 5 of 7) protein_coding-intron (ENSMUSG00000021055.14, intron 6 of 8) 15646 ENSMUSG00000046580.10 ENSMUSG00000046580 ENSMUST00000121461 Gm7862 processed_pseudogene Interval_122572 chr5 23855907 23856658 + 0 NA Intergenic Intergenic 4072 ENSMUSG00000095205.1 ENSMUSG00000095205 ENSMUST00000175580 Snord93 snoRNA Interval_70561 chr17 12038988 12039658 + 0 NA intron (ENSMUSG00000023826.16, intron 1 of 2) protein_coding-intron (ENSMUSG00000023826.16, intron 1 of 2) -80006 ENSMUSG00000023827.8 ENSMUSG00000023827 ENSMUST00000167905 Agpat4 protein_coding Interval_119820 chr4 140201991 140202689 + 0 NA intron (ENSMUSG00000040972.8, intron 1 of 9) protein_coding-intron (ENSMUSG00000040972.8, intron 1 of 9) 44444 ENSMUSG00000040972.8 ENSMUSG00000040972 ENSMUST00000039331 Igsf21 protein_coding Interval_168461 chr9 81182431 81183369 + 0 NA intron (ENSMUSG00000097655.3, intron 2 of 3) lincRNA-intron (ENSMUSG00000097655.3, intron 2 of 3) -165942 ENSMUSG00000099085.1 ENSMUSG00000099085 ENSMUST00000184817 Gm8151 processed_pseudogene Interval_143889 chr7 16959526 16960476 + 0 NA intron (ENSMUSG00000041141.7, intron 1 of 2) protein_coding-intron (ENSMUSG00000041141.7, intron 1 of 2) 322 ENSMUSG00000041141.7 ENSMUSG00000041141 ENSMUST00000038163 Pnmal1 protein_coding Interval_71941 chr17 27125095 27125630 + 0 NA intron (ENSMUSG00000024208.16, intron 3 of 4) protein_coding-intron (ENSMUSG00000024208.16, intron 2 of 3) 8261 ENSMUSG00000024208.16 ENSMUSG00000024208 ENSMUST00000119227 Uqcc2 protein_coding Interval_37599 chr12 70199359 70199990 + 0 NA exon (ENSMUSG00000021069.17, exon 11 of 20) protein_coding-exon (ENSMUSG00000021069.17, exon 11 of 20) 7674 ENSMUSG00000021069.17 ENSMUSG00000021069 ENSMUST00000166609 Pygl protein_coding Interval_114544 chr4 82412116 82413134 + 0 NA intron (ENSMUSG00000008575.17, intron 2 of 4) protein_coding-intron (ENSMUSG00000008575.17, intron 2 of 11) -26785 ENSMUSG00000084595.1 ENSMUSG00000084595 ENSMUST00000122646 n-R5s188 rRNA Interval_49954 chr13 118828286 118828592 + 0 NA Intergenic Intergenic 29975 ENSMUSG00000114868.1 ENSMUSG00000114868 ENSMUST00000224309 Gm47335 processed_pseudogene Interval_10127 chr1 165959308 165961697 + 0 NA intron (ENSMUSG00000026565.18, intron 1 of 6) protein_coding-intron (ENSMUSG00000026565.18, intron 1 of 14) 18884 ENSMUSG00000099008.1 ENSMUSG00000099008 ENSMUST00000184037 Gm17976 processed_pseudogene Interval_90424 chr2 30363861 30364771 + 0 NA promoter-TSS (ENSMUSG00000026858.18) protein_coding-promoter-TSS (ENSMUSG00000026858.18) -3360 ENSMUSG00000105537.1 ENSMUSG00000105537 ENSMUST00000198501 Gm47292 miRNA Interval_88373 chr2 4539211 4540257 + 0 NA TTS (ENSMUSG00000026657.17) protein_coding-TTS (ENSMUSG00000026657.17) 47553 ENSMUSG00000086018.7 ENSMUSG00000086018 ENSMUST00000137801 Gm13179 antisense Interval_16154 chr10 61074634 61074975 + 0 NA Intergenic Intergenic -14527 ENSMUSG00000020098.7 ENSMUSG00000020098 ENSMUST00000020298 Pcbd1 protein_coding Interval_148572 chr7 82766177 82766918 + 0 NA intron (ENSMUSG00000038563.14, intron 18 of 19) protein_coding-intron (ENSMUSG00000038563.14, intron 18 of 19) -10903 ENSMUSG00000086690.1 ENSMUSG00000086690 ENSMUST00000144828 4933406J10Rik antisense Interval_13121 chr10 11780713 11781644 + 0 NA Intergenic Intergenic 57717 ENSMUSG00000112233.1 ENSMUSG00000112233 ENSMUST00000219464 Gm48698 processed_pseudogene Interval_154923 chr8 25090635 25091772 + 0 NA intron (ENSMUSG00000031557.16, intron 1 of 11) protein_coding-intron (ENSMUSG00000031557.16, intron 1 of 11) 10951 ENSMUSG00000031557.16 ENSMUSG00000031557 ENSMUST00000125466 Plekha2 protein_coding Interval_77212 chr17 87379684 87380359 + 0 NA TTS (ENSMUSG00000036918.16) protein_coding-TTS (ENSMUSG00000036918.16) -15559 ENSMUSG00000089755.1 ENSMUSG00000089755 ENSMUST00000159031 0610012D04Rik antisense Interval_2288 chr1 37690845 37691672 + 0 NA intron (ENSMUSG00000026090.16, intron 1 of 3) protein_coding-intron (ENSMUSG00000026090.16, intron 1 of 3) 5406 ENSMUSG00000102650.1 ENSMUSG00000102650 ENSMUST00000192480 Gm19863 TEC Interval_72692 chr17 31580250 31581098 + 0 NA intron (ENSMUSG00000006705.13, intron 1 of 10) protein_coding-intron (ENSMUSG00000006705.13, intron 1 of 10) -7803 ENSMUSG00000006705.13 ENSMUSG00000006705 ENSMUST00000176513 Pknox1 protein_coding Interval_124992 chr5 63472503 63473597 + 0 NA Intergenic Intergenic 177844 ENSMUSG00000104868.1 ENSMUSG00000104868 ENSMUST00000067917 Gm9954 TEC Interval_108491 chr3 127627860 127628958 + 0 NA Intergenic Intergenic -4726 ENSMUSG00000027967.8 ENSMUSG00000027967 ENSMUST00000029587 Neurog2 protein_coding Interval_167759 chr9 72574073 72574470 + 0 NA intron (ENSMUSG00000037674.15, intron 2 of 5) protein_coding-intron (ENSMUSG00000037674.15, intron 1 of 8) -20652 ENSMUSG00000102672.1 ENSMUSG00000102672 ENSMUST00000192251 Gm37105 TEC Interval_172255 chrX 12021106 12021400 + 0 NA Intergenic Intergenic 36785 ENSMUSG00000081947.2 ENSMUSG00000081947 ENSMUST00000117924 Gm14512 processed_pseudogene Interval_12973 chr10 8844104 8845133 + 0 NA intron (ENSMUSG00000015305.6, intron 2 of 3) protein_coding-intron (ENSMUSG00000015305.6, intron 2 of 19) 16825 ENSMUSG00000111165.1 ENSMUSG00000111165 ENSMUST00000214016 4930553I21Rik TEC Interval_72372 chr17 29457831 29460017 + 0 NA exon (ENSMUSG00000117427.1, exon 1 of 2) lincRNA-exon (ENSMUSG00000117427.1, exon 1 of 2) 476 ENSMUSG00000117427.1 ENSMUSG00000117427 ENSMUST00000234634 Gm36199 lincRNA Interval_41243 chr12 112090831 112091516 + 0 NA Intergenic Intergenic -15506 ENSMUSG00000037686.6 ENSMUSG00000037686 ENSMUST00000222970 Aspg protein_coding Interval_46068 chr13 60743163 60744722 + 0 NA intron (ENSMUSG00000021559.14, intron 19 of 26) protein_coding-intron (ENSMUSG00000021559.14, intron 19 of 26) -27733 ENSMUSG00000096874.2 ENSMUSG00000096874 ENSMUST00000078515 Gm10312 processed_pseudogene Interval_78288 chr18 11656974 11658313 + 0 NA promoter-TSS (ENSMUSG00000041238.16) protein_coding-promoter-TSS (ENSMUSG00000041238.16) 141 ENSMUSG00000117634.1 ENSMUSG00000117634 ENSMUST00000235010 Gm50069 antisense Interval_47632 chr13 90426591 90427522 + 0 NA Intergenic Intergenic -8956 ENSMUSG00000114204.1 ENSMUSG00000114204 ENSMUST00000225049 Gm47520 lincRNA Interval_129161 chr5 117920959 117921180 + 0 NA intron (ENSMUSG00000029361.18, intron 16 of 27) protein_coding-intron (ENSMUSG00000029361.18, intron 17 of 28) 18449 ENSMUSG00000098072.1 ENSMUSG00000098072 ENSMUST00000182216 Gm26995 antisense Interval_149168 chr7 95731145 95731809 + 0 NA Intergenic Intergenic 181909 ENSMUSG00000108628.1 ENSMUSG00000108628 ENSMUST00000205327 Gm5037 processed_pseudogene Interval_67513 chr16 50074036 50074621 + 0 NA Intergenic Intergenic -36745 ENSMUSG00000098028.1 ENSMUSG00000098028 ENSMUST00000182962 Gm8824 processed_pseudogene Interval_103445 chr3 41601314 41602088 + 0 NA promoter-TSS (ENSMUSG00000025764.14) protein_coding-promoter-TSS (ENSMUSG00000025764.14) -38003 ENSMUSG00000103843.1 ENSMUSG00000103843 ENSMUST00000192060 Gm31266 antisense Interval_5560 chr1 89807461 89808033 + 0 NA intron (ENSMUSG00000055013.16, intron 12 of 16) protein_coding-intron (ENSMUSG00000055013.16, intron 13 of 17) -17734 ENSMUSG00000103252.1 ENSMUSG00000103252 ENSMUST00000193177 Gm37521 TEC Interval_68048 chr16 64739492 64740424 + 0 NA Intergenic Intergenic 26698 ENSMUSG00000059920.9 ENSMUSG00000059920 ENSMUST00000076991 4930453N24Rik protein_coding Interval_78954 chr18 22763935 22764812 + 0 NA intron (ENSMUSG00000041923.15, intron 7 of 9) protein_coding-intron (ENSMUSG00000041923.15, intron 4 of 6) 274566 ENSMUSG00000041923.15 ENSMUSG00000041923 ENSMUST00000097652 Nol4 protein_coding Interval_40061 chr12 100945259 100946155 + 0 NA promoter-TSS (ENSMUSG00000021182.16) protein_coding-promoter-TSS (ENSMUSG00000021182.16) 3850 ENSMUSG00000097160.2 ENSMUSG00000097160 ENSMUST00000221309 A630072L19Rik antisense Interval_31274 chr11 99270768 99271086 + 0 NA Intergenic Intergenic 14335 ENSMUSG00000020913.3 ENSMUSG00000020913 ENSMUST00000017255 Krt24 protein_coding Interval_758 chr1 10718056 10718371 + 0 NA intron (ENSMUSG00000042501.12, intron 1 of 9) protein_coding-intron (ENSMUSG00000042501.12, intron 1 of 10) 1732 ENSMUSG00000042501.12 ENSMUSG00000042501 ENSMUST00000140938 Cpa6 protein_coding Interval_73539 chr17 40108947 40110647 + 0 NA Intergenic Intergenic -5678 ENSMUSG00000045842.9 ENSMUSG00000045842 ENSMUST00000233313 Tgif2-ps2 transcribed_processed_pseudogene Interval_96023 chr2 119239997 119240580 + 0 NA intron (ENSMUSG00000027315.13, intron 1 of 9) protein_coding-intron (ENSMUSG00000027315.13, intron 2 of 10) -6085 ENSMUSG00000027315.13 ENSMUSG00000027315 ENSMUST00000134872 Spint1 protein_coding Interval_73363 chr17 36760466 36760726 + 0 NA exon (ENSMUSG00000092460.1, exon 2 of 2) processed_pseudogene-exon (ENSMUSG00000092460.1, exon 2 of 2) 1827 ENSMUSG00000092460.1 ENSMUSG00000092460 ENSMUST00000173552 Gm8878 processed_pseudogene Interval_86740 chr19 43515900 43516851 + 0 NA promoter-TSS (ENSMUSG00000025190.13) protein_coding-promoter-TSS (ENSMUSG00000025190.13) -510 ENSMUSG00000025190.13 ENSMUSG00000025190 ENSMUST00000124954 Got1 protein_coding Interval_98119 chr2 148375239 148375888 + 0 NA Intergenic Intergenic -19781 ENSMUSG00000037014.4 ENSMUSG00000037014 ENSMUST00000109962 Sstr4 protein_coding Interval_69025 chr16 90187572 90187850 + 0 NA Intergenic Intergenic -10437 ENSMUSG00000116829.1 ENSMUSG00000116829 ENSMUST00000231225 Gm49704 processed_pseudogene Interval_86355 chr19 38960086 38960365 + 0 NA intron (ENSMUSG00000025001.11, intron 19 of 21) protein_coding-intron (ENSMUSG00000025001.11, intron 19 of 21) -16422 ENSMUSG00000114610.1 ENSMUSG00000114610 ENSMUST00000225458 Cyp2c52-ps unprocessed_pseudogene Interval_24382 chr11 32817550 32817809 + 0 NA TTS (ENSMUSG00000020270.9) protein_coding-TTS (ENSMUSG00000020270.9) 6883 ENSMUSG00000020270.9 ENSMUSG00000020270 ENSMUST00000020508 Smim23 protein_coding Interval_160479 chr8 109868028 109869458 + 0 NA promoter-TSS (ENSMUSG00000078143.3) antisense-promoter-TSS (ENSMUSG00000078143.3) 140 ENSMUSG00000031732.12 ENSMUSG00000031732 ENSMUST00000034175 Phlpp2 protein_coding Interval_101998 chr3 14644767 14645148 + 0 NA intron (ENSMUSG00000027555.8, intron 1 of 6) protein_coding-intron (ENSMUSG00000027555.8, intron 1 of 6) 3230 ENSMUSG00000027555.8 ENSMUSG00000027555 ENSMUST00000029071 Car13 protein_coding Interval_101984 chr3 14433584 14434890 + 0 NA intron (ENSMUSG00000098036.1, intron 1 of 1) processed_pseudogene-intron (ENSMUSG00000098036.1, intron 1 of 1) 772 ENSMUSG00000098036.1 ENSMUSG00000098036 ENSMUST00000182945 Gm8955 processed_pseudogene Interval_81440 chr18 60766742 60767612 + 0 NA intron (ENSMUSG00000024608.11, intron 1 of 5) protein_coding-intron (ENSMUSG00000024608.11, intron 1 of 5) 12217 ENSMUSG00000080779.1 ENSMUSG00000080779 ENSMUST00000118088 Gm8731 processed_pseudogene Interval_64862 chr16 16692953 16693237 + 0 NA Intergenic Intergenic -16690 ENSMUSG00000048101.6 ENSMUSG00000048101 ENSMUST00000057886 Olfr19 protein_coding Interval_33389 chr11 116280662 116283577 + 0 NA intron (ENSMUSG00000020793.5, intron 1 of 1) protein_coding-intron (ENSMUSG00000020793.5, intron 1 of 1) 633 ENSMUSG00000020793.5 ENSMUSG00000020793 ENSMUST00000154277 Galr2 protein_coding Interval_13202 chr10 13007997 13009048 + 0 NA exon (ENSMUSG00000078348.4, exon 1 of 1) protein_coding-exon (ENSMUSG00000078348.4, exon 1 of 1) 3179 ENSMUSG00000078348.4 ENSMUSG00000078348 ENSMUST00000105139 Sf3b5 protein_coding Interval_124528 chr5 50042237 50043345 + 0 NA intron (ENSMUSG00000029090.12, intron 1 of 18) protein_coding-intron (ENSMUSG00000029090.12, intron 1 of 18) 15854 ENSMUSG00000029090.12 ENSMUSG00000029090 ENSMUST00000199132 Adgra3 protein_coding Interval_172681 chrX 42067825 42069077 + 0 NA promoter-TSS (ENSMUSG00000025860.15) protein_coding-promoter-TSS (ENSMUSG00000025860.15) 8530 ENSMUSG00000025860.15 ENSMUSG00000025860 ENSMUST00000026978 Xiap protein_coding Interval_166366 chr9 58662232 58662583 + 0 NA intron (ENSMUSG00000074269.10, intron 3 of 5) protein_coding-intron (ENSMUSG00000074269.10, intron 3 of 5) 1862 ENSMUSG00000074269.10 ENSMUSG00000074269 ENSMUST00000186960 Rec114 protein_coding Interval_116094 chr4 107603065 107604041 + 0 NA intron (ENSMUSG00000034762.9, intron 1 of 4) protein_coding-intron (ENSMUSG00000034762.9, intron 4 of 10) 22350 ENSMUSG00000034762.9 ENSMUSG00000034762 ENSMUST00000125573 Glis1 protein_coding Interval_76107 chr17 75041896 75042115 + 0 NA intron (ENSMUSG00000001870.16, intron 2 of 34) protein_coding-intron (ENSMUSG00000001870.16, intron 2 of 33) 36437 ENSMUSG00000001870.16 ENSMUSG00000001870 ENSMUST00000135750 Ltbp1 protein_coding Interval_117238 chr4 120876029 120876311 + 0 NA intron (ENSMUSG00000032890.17, intron 2 of 3) protein_coding-intron (ENSMUSG00000032890.17, intron 2 of 7) -1699 ENSMUSG00000032890.17 ENSMUSG00000032890 ENSMUST00000171363 Rims3 protein_coding Interval_132183 chr5 143157154 143157593 + 0 NA TTS (ENSMUSG00000104836.1) miRNA-TTS (ENSMUSG00000104836.1) 169 ENSMUSG00000105901.1 ENSMUSG00000105901 ENSMUST00000199147 Gm7291 processed_pseudogene Interval_7697 chr1 133117849 133118921 + 0 NA Intergenic Intergenic -12959 ENSMUSG00000046062.5 ENSMUSG00000046062 ENSMUST00000122956 Ppp1r15b protein_coding Interval_58340 chr15 32666302 32666783 + 0 NA intron (ENSMUSG00000022231.10, intron 16 of 18) protein_coding-intron (ENSMUSG00000022231.10, intron 16 of 22) -43037 ENSMUSG00000115063.1 ENSMUSG00000115063 ENSMUST00000227807 4930465K09Rik antisense Interval_50949 chr14 21018803 21019674 + 0 NA intron (ENSMUSG00000021823.10, intron 14 of 20) protein_coding-intron (ENSMUSG00000021823.10, intron 14 of 20) 32957 ENSMUSG00000021824.13 ENSMUSG00000021824 ENSMUST00000130370 Ap3m1 protein_coding Interval_25747 chr11 51400285 51400544 + 0 NA intron (ENSMUSG00000063564.13, intron 2 of 28) protein_coding-intron (ENSMUSG00000063564.13, intron 2 of 28) 129979 ENSMUSG00000093734.1 ENSMUSG00000093734 ENSMUST00000177296 Gm25082 misc_RNA Interval_49179 chr13 109221751 109222015 + 0 NA intron (ENSMUSG00000021699.17, intron 1 of 14) protein_coding-intron (ENSMUSG00000021699.17, intron 1 of 14) -102861 ENSMUSG00000076946.2 ENSMUSG00000076946 ENSMUST00000103758 Mir582 miRNA Interval_32096 chr11 105229213 105229464 + 0 NA intron (ENSMUSG00000020694.17, intron 6 of 17) protein_coding-intron (ENSMUSG00000020694.17, intron 6 of 20) 20485 ENSMUSG00000020694.17 ENSMUSG00000020694 ENSMUST00000146910 Tlk2 protein_coding Interval_55104 chr14 78135616 78136097 + 0 NA Intergenic Intergenic -46875 ENSMUSG00000045655.9 ENSMUSG00000045655 ENSMUST00000173826 Fam216b protein_coding Interval_142861 chr6 146526363 146526578 + 0 NA Intergenic Intergenic 51310 ENSMUSG00000040250.14 ENSMUSG00000040250 ENSMUST00000205078 Ints13 protein_coding Interval_71628 chr17 24968675 24968963 + 0 NA intron (ENSMUSG00000038002.9, intron 20 of 20) protein_coding-intron (ENSMUSG00000038002.9, intron 20 of 20) -8174 ENSMUSG00000024165.9 ENSMUSG00000024165 ENSMUST00000233481 Jpt2 protein_coding Interval_42209 chr13 9938971 9939753 + 0 NA intron (ENSMUSG00000046159.16, intron 4 of 4) protein_coding-intron (ENSMUSG00000046159.16, intron 4 of 4) 46452 ENSMUSG00000113146.1 ENSMUSG00000113146 ENSMUST00000221304 Gm47406 processed_pseudogene Interval_118275 chr4 129976836 129977750 + 0 NA Intergenic Intergenic 16919 ENSMUSG00000085389.7 ENSMUSG00000085389 ENSMUST00000139884 1700003M07Rik lincRNA Interval_110656 chr4 5736795 5737736 + 0 NA intron (ENSMUSG00000049119.14, intron 2 of 4) protein_coding-intron (ENSMUSG00000049119.14, intron 2 of 2) -35614 ENSMUSG00000049119.14 ENSMUSG00000049119 ENSMUST00000145365 Fam110b protein_coding Interval_115656 chr4 101663345 101664938 + 0 NA Intergenic Intergenic 16348 ENSMUSG00000035212.14 ENSMUSG00000035212 ENSMUST00000106927 Leprot protein_coding Interval_153050 chr7 141060251 141061658 + 0 NA promoter-TSS (ENSMUSG00000055629.5) protein_coding-promoter-TSS (ENSMUSG00000055629.5) -9321 ENSMUSG00000055629.5 ENSMUSG00000055629 ENSMUST00000210517 B4galnt4 protein_coding Interval_156403 chr8 47940541 47941400 + 0 NA intron (ENSMUSG00000031563.8, intron 1 of 22) protein_coding-intron (ENSMUSG00000031563.8, intron 1 of 22) 41788 ENSMUSG00000064519.1 ENSMUSG00000064519 ENSMUST00000082585 n-R5s97 rRNA Interval_85790 chr19 31342116 31342722 + 0 NA intron (ENSMUSG00000052920.16, intron 2 of 17) protein_coding-intron (ENSMUSG00000052920.16, intron 2 of 17) 229873 ENSMUSG00000118011.1 ENSMUSG00000118011 ENSMUST00000235353 Gm50266 processed_pseudogene Interval_64573 chr16 13409794 13410448 + 0 NA intron (ENSMUSG00000009569.14, intron 14 of 14) protein_coding-intron (ENSMUSG00000009569.14, intron 16 of 16) -39402 ENSMUSG00000076972.2 ENSMUSG00000076972 ENSMUST00000103784 Mir193b miRNA Interval_94466 chr2 91411956 91412426 + 0 NA intron (ENSMUSG00000040591.18, intron 1 of 7) protein_coding-intron (ENSMUSG00000040591.18, intron 2 of 8) -5055 ENSMUSG00000080507.2 ENSMUSG00000080507 ENSMUST00000116857 Gm22071 miRNA Interval_142691 chr6 145023042 145023601 + 0 NA intron (ENSMUSG00000030268.17, intron 2 of 5) protein_coding-intron (ENSMUSG00000030268.17, intron 5 of 10) 14867 ENSMUSG00000088867.1 ENSMUSG00000088867 ENSMUST00000158242 Gm23071 rRNA Interval_154939 chr8 25188662 25189904 + 0 NA intron (ENSMUSG00000065954.11, intron 1 of 1) protein_coding-intron (ENSMUSG00000065954.11, intron 1 of 1) 12166 ENSMUSG00000065954.11 ENSMUSG00000065954 ENSMUST00000211218 Tacc1 protein_coding Interval_135812 chr6 47506086 47506614 + 0 NA intron (ENSMUSG00000029686.15, intron 7 of 19) protein_coding-intron (ENSMUSG00000029686.15, intron 7 of 21) -13346 ENSMUSG00000029686.15 ENSMUSG00000029686 ENSMUST00000149531 Cul1 protein_coding Interval_78876 chr18 21092129 21092356 + 0 NA intron (ENSMUSG00000024313.8, intron 10 of 14) protein_coding-intron (ENSMUSG00000024313.8, intron 10 of 14) -15133 ENSMUSG00000062962.5 ENSMUSG00000062962 ENSMUST00000084199 Gm6378 processed_pseudogene Interval_108678 chr3 130044220 130044418 + 0 NA intron (ENSMUSG00000001052.15, intron 1 of 1) protein_coding-intron (ENSMUSG00000001052.15, intron 1 of 23) -24093 ENSMUSG00000063328.6 ENSMUSG00000063328 ENSMUST00000076703 Gm9396 processed_pseudogene Interval_92190 chr2 55665186 55665674 + 0 NA Intergenic Intergenic -110118 ENSMUSG00000082971.1 ENSMUSG00000082971 ENSMUST00000120782 Gm13517 processed_pseudogene Interval_73590 chr17 40877856 40878183 + 0 NA intron (ENSMUSG00000054951.3, intron 1 of 1) protein_coding-intron (ENSMUSG00000054951.3, intron 1 of 1) 2539 ENSMUSG00000054951.3 ENSMUSG00000054951 ENSMUST00000233122 9130008F23Rik protein_coding Interval_51866 chr14 33149701 33149935 + 0 NA intron (ENSMUSG00000051506.17, intron 6 of 61) protein_coding-intron (ENSMUSG00000051506.17, intron 6 of 58) 35690 ENSMUSG00000051506.17 ENSMUSG00000051506 ENSMUST00000159606 Wdfy4 protein_coding Interval_111975 chr4 32922947 32924477 + 0 NA promoter-TSS (ENSMUSG00000040183.13) protein_coding-promoter-TSS (ENSMUSG00000040183.13) 31026 ENSMUSG00000083565.1 ENSMUSG00000083565 ENSMUST00000119904 Gm11941 processed_pseudogene Interval_13045 chr10 10038169 10038706 + 0 NA intron (ENSMUSG00000101621.2, intron 1 of 1) lincRNA-intron (ENSMUSG00000101621.2, intron 1 of 1) -2483 ENSMUSG00000112059.1 ENSMUSG00000112059 ENSMUST00000219625 Gm48282 processed_pseudogene Interval_86747 chr19 43583545 43585637 + 0 NA Intergenic Intergenic -11234 ENSMUSG00000117991.1 ENSMUSG00000117991 ENSMUST00000235198 Gm34636 lincRNA Interval_33503 chr11 116903862 116904203 + 0 NA Intergenic Intergenic -43303 ENSMUSG00000043857.16 ENSMUSG00000043857 ENSMUST00000126757 Mgat5b protein_coding Interval_105358 chr3 85456924 85457399 + 0 NA intron (ENSMUSG00000110441.1, intron 2 of 4) protein_coding-intron (ENSMUSG00000102805.5, intron 3 of 9) 8967 ENSMUSG00000110441.1 ENSMUSG00000110441 ENSMUST00000211986 Gm45790 lincRNA Interval_139517 chr6 100704378 100705741 + 0 NA exon (ENSMUSG00000030074.9, exon 1 of 7) protein_coding-exon (ENSMUSG00000030074.9, exon 1 of 7) 304 ENSMUSG00000030074.9 ENSMUSG00000030074 ENSMUST00000141333 Gxylt2 protein_coding Interval_117809 chr4 126339183 126339976 + 0 NA exon (ENSMUSG00000028842.15, exon 19 of 19) protein_coding-exon (ENSMUSG00000028842.15, exon 19 of 19) -13949 ENSMUSG00000028845.15 ENSMUSG00000028845 ENSMUST00000141990 Tekt2 protein_coding Interval_61117 chr15 79338911 79339154 + 0 NA Intergenic Intergenic -9370 ENSMUSG00000042622.14 ENSMUSG00000042622 ENSMUST00000229285 Maff protein_coding Interval_26844 chr11 61003741 61005747 + 0 NA Intergenic Intergenic -61060 ENSMUSG00000042529.14 ENSMUSG00000042529 ENSMUST00000108717 Kcnj12 protein_coding Interval_129945 chr5 123235447 123236434 + 0 NA intron (ENSMUSG00000029440.15, intron 3 of 3) protein_coding-intron (ENSMUSG00000029440.15, intron 2 of 5) 6993 ENSMUSG00000029440.15 ENSMUSG00000029440 ENSMUST00000198183 Psmd9 protein_coding Interval_7423 chr1 131207709 131207937 + 0 NA intron (ENSMUSG00000026430.16, intron 2 of 2) protein_coding-intron (ENSMUSG00000026430.16, intron 2 of 5) -9054 ENSMUSG00000101729.1 ENSMUSG00000101729 ENSMUST00000189015 Gm17796 processed_pseudogene Interval_70343 chr17 8674745 8674973 + 0 NA intron (ENSMUSG00000023868.17, intron 1 of 3) protein_coding-intron (ENSMUSG00000023868.17, intron 1 of 21) -82159 ENSMUSG00000023868.17 ENSMUSG00000023868 ENSMUST00000115708 Pde10a protein_coding Interval_93598 chr2 74727124 74728628 + 0 NA intron (ENSMUSG00000100642.1, intron 1 of 3) protein_coding-intron (ENSMUSG00000101174.8, intron 5 of 5) 1148 ENSMUSG00000100642.1 ENSMUSG00000100642 ENSMUST00000053932 Gm28230 protein_coding Interval_105277 chr3 84465536 84466286 + 0 NA intron (ENSMUSG00000041842.15, intron 3 of 5) protein_coding-intron (ENSMUSG00000041842.15, intron 2 of 11) 14482 ENSMUSG00000041842.15 ENSMUSG00000041842 ENSMUST00000131065 Fhdc1 protein_coding Interval_24644 chr11 35599194 35599481 + 0 NA intron (ENSMUSG00000056427.10, intron 6 of 8) protein_coding-intron (ENSMUSG00000056427.10, intron 11 of 35) -17479 ENSMUSG00000065583.1 ENSMUSG00000065583 ENSMUST00000083649 Mir218-2 miRNA Interval_114476 chr4 80752328 80752807 + 0 NA Intergenic Intergenic -94021 ENSMUSG00000005994.14 ENSMUSG00000005994 ENSMUST00000133932 Tyrp1 protein_coding Interval_88652 chr2 8786387 8786817 + 0 NA Intergenic Intergenic 152665 ENSMUSG00000084374.1 ENSMUSG00000084374 ENSMUST00000117255 Gm13255 processed_pseudogene Interval_38352 chr12 77660582 77661265 + 0 NA Intergenic Intergenic -22138 ENSMUSG00000111903.1 ENSMUSG00000111903 ENSMUST00000219952 4930458K08Rik lincRNA Interval_56835 chr14 122350795 122351820 + 0 NA intron (ENSMUSG00000025545.10, intron 2 of 7) protein_coding-intron (ENSMUSG00000025545.10, intron 2 of 7) 36853 ENSMUSG00000095311.1 ENSMUSG00000095311 ENSMUST00000175481 Gm25464 snRNA Interval_170413 chr9 107746452 107747274 + 0 NA exon (ENSMUSG00000032580.12, exon 1 of 1) protein_coding-exon (ENSMUSG00000032580.12, exon 1 of 1) 13700 ENSMUSG00000032580.12 ENSMUSG00000032580 ENSMUST00000181993 Rbm5 protein_coding Interval_158858 chr8 87442752 87442963 + 0 NA Intergenic Intergenic -15587 ENSMUSG00000098360.1 ENSMUSG00000098360 ENSMUST00000184406 4930535O05Rik lincRNA Interval_121258 chr4 154466425 154466777 + 0 NA intron (ENSMUSG00000039410.16, intron 3 of 15) protein_coding-intron (ENSMUSG00000039410.16, intron 3 of 16) -83681 ENSMUSG00000086565.1 ENSMUSG00000086565 ENSMUST00000143888 Gm13133 antisense Interval_106810 chr3 101031396 101032292 + 0 NA Intergenic Intergenic -9668 ENSMUSG00000086564.9 ENSMUSG00000086564 ENSMUST00000167086 Cd101 protein_coding Interval_30183 chr11 90269187 90270351 + 0 NA intron (ENSMUSG00000003948.17, intron 6 of 6) protein_coding-intron (ENSMUSG00000003948.17, intron 6 of 6) 20313 ENSMUSG00000003948.17 ENSMUSG00000003948 ENSMUST00000004050 Mmd protein_coding Interval_70240 chr17 7181214 7182502 + 0 NA intron (ENSMUSG00000023809.10, intron 1 of 20) protein_coding-intron (ENSMUSG00000023809.10, intron 1 of 20) 11731 ENSMUSG00000023809.10 ENSMUSG00000023809 ENSMUST00000231530 Rps6ka2 protein_coding Interval_889 chr1 13018450 13018853 + 0 NA Intergenic Intergenic -27474 ENSMUSG00000025938.16 ENSMUSG00000025938 ENSMUST00000191566 Slco5a1 protein_coding Interval_161444 chr8 120485967 120490951 + 0 NA promoter-TSS (ENSMUSG00000031822.20) protein_coding-promoter-TSS (ENSMUSG00000031822.20) -32156 ENSMUSG00000097983.1 ENSMUSG00000097983 ENSMUST00000182423 Gm26971 sense_intronic Interval_35517 chr12 24186316 24186776 + 0 NA Intergenic Intergenic -7277 ENSMUSG00000113632.1 ENSMUSG00000113632 ENSMUST00000222650 Gm47446 unprocessed_pseudogene Interval_4697 chr1 77419526 77420505 + 0 NA intron (ENSMUSG00000026235.14, intron 4 of 15) protein_coding-intron (ENSMUSG00000026235.14, intron 5 of 17) 76753 ENSMUSG00000099141.1 ENSMUSG00000099141 ENSMUST00000184495 Mir6352 miRNA Interval_159304 chr8 93088335 93088641 + 0 NA Intergenic Intergenic -8471 ENSMUSG00000078964.2 ENSMUSG00000078964 ENSMUST00000109582 Ces1b protein_coding Interval_53563 chr14 59335062 59335261 + 0 NA intron (ENSMUSG00000091649.3, intron 2 of 8) protein_coding-intron (ENSMUSG00000091649.3, intron 2 of 8) 6190 ENSMUSG00000091649.3 ENSMUSG00000091649 ENSMUST00000166121 Phf11b protein_coding Interval_162604 chr9 6286831 6287334 + 0 NA intron (ENSMUSG00000032006.15, intron 1 of 6) protein_coding-intron (ENSMUSG00000032006.15, intron 1 of 6) -17236 ENSMUSG00000047619.5 ENSMUSG00000047619 ENSMUST00000051706 Ddi1 protein_coding Interval_100913 chr2 173306850 173307783 + 0 NA Intergenic Intergenic 30618 ENSMUSG00000087600.1 ENSMUSG00000087600 ENSMUST00000150185 Pmepa1os antisense Interval_117424 chr4 123613640 123613911 + 0 NA promoter-TSS (ENSMUSG00000028649.21) protein_coding-promoter-TSS (ENSMUSG00000028649.21) -32 ENSMUSG00000028649.21 ENSMUSG00000028649 ENSMUST00000146000 Macf1 protein_coding Interval_24279 chr11 32057428 32058717 + 0 NA exon (ENSMUSG00000020297.10, exon 5 of 5) protein_coding-exon (ENSMUSG00000020297.10, exon 5 of 5) 43156 ENSMUSG00000086386.1 ENSMUSG00000086386 ENSMUST00000145338 Gm12108 lincRNA Interval_108340 chr3 124495830 124496816 + 0 NA Intergenic Intergenic -5251 ENSMUSG00000077726.1 ENSMUSG00000077726 ENSMUST00000104538 Gm22900 snoRNA Interval_164699 chr9 40658752 40659042 + 0 NA Intergenic Intergenic 10210 ENSMUSG00000110992.1 ENSMUSG00000110992 ENSMUST00000216204 Gm35371 lincRNA Interval_41992 chr13 6056654 6056855 + 0 NA Intergenic Intergenic 17028 ENSMUSG00000113483.1 ENSMUSG00000113483 ENSMUST00000221918 Gm47548 lincRNA Interval_143228 chr7 4630041 4631011 + 0 NA promoter-TSS (ENSMUSG00000045282.7) protein_coding-promoter-TSS (ENSMUSG00000045282.7) -190 ENSMUSG00000045282.7 ENSMUSG00000045282 ENSMUST00000206610 Tmem86b protein_coding Interval_65511 chr16 22941614 22943565 + 0 NA Intergenic Intergenic -8511 ENSMUSG00000022877.9 ENSMUSG00000022877 ENSMUST00000232422 Hrg protein_coding Interval_21248 chr10 127446364 127446778 + 0 NA intron (ENSMUSG00000025404.15, intron 2 of 2) protein_coding-intron (ENSMUSG00000025404.15, intron 2 of 23) -12964 ENSMUSG00000025404.15 ENSMUSG00000025404 ENSMUST00000171426 R3hdm2 protein_coding Interval_75658 chr17 70149451 70150736 + 0 NA intron (ENSMUSG00000003279.17, intron 2 of 13) protein_coding-intron (ENSMUSG00000003279.17, intron 2 of 14) -224262 ENSMUSG00000117078.1 ENSMUSG00000117078 ENSMUST00000232868 Gm4561 processed_pseudogene Interval_162136 chr8 125431295 125431736 + 0 NA intron (ENSMUSG00000001995.9, intron 19 of 22) protein_coding-intron (ENSMUSG00000001995.9, intron 17 of 20) 138293 ENSMUSG00000001995.9 ENSMUSG00000001995 ENSMUST00000212604 Sipa1l2 protein_coding Interval_84275 chr19 9228655 9229415 + 0 NA intron (ENSMUSG00000024658.7, intron 3 of 5) antisense-intron (ENSMUSG00000024658.7, intron 3 of 5) 5943 ENSMUSG00000077055.1 ENSMUSG00000077055 ENSMUST00000103867 Gm24543 miRNA Interval_25070 chr11 43633025 43634792 + 0 NA Intergenic Intergenic -17579 ENSMUSG00000082614.1 ENSMUSG00000082614 ENSMUST00000117511 Gm12149 processed_pseudogene Interval_114710 chr4 84168391 84169322 + 0 NA Intergenic Intergenic -38567 ENSMUSG00000087378.1 ENSMUSG00000087378 ENSMUST00000150794 Gm12414 lincRNA Interval_22840 chr11 16534163 16536082 + 0 NA Intergenic Intergenic 20589 ENSMUSG00000084347.3 ENSMUSG00000084347 ENSMUST00000120718 Akt2-ps processed_pseudogene Interval_151768 chr7 126535652 126536690 + 0 NA Intergenic Intergenic 27809 ENSMUSG00000084453.1 ENSMUSG00000084453 ENSMUST00000122504 Gm24596 snRNA Interval_49087 chr13 107872103 107874029 + 0 NA intron (ENSMUSG00000032846.10, intron 1 of 12) protein_coding-intron (ENSMUSG00000032846.10, intron 2 of 14) 16998 ENSMUSG00000032846.10 ENSMUSG00000032846 ENSMUST00000224719 Zswim6 protein_coding Interval_126218 chr5 82699418 82699849 + 0 NA Intergenic Intergenic 99432 ENSMUSG00000080586.1 ENSMUSG00000080586 ENSMUST00000116936 Mir1187 miRNA Interval_3621 chr1 60054629 60055194 + 0 NA Intergenic Intergenic -11789 ENSMUSG00000026018.12 ENSMUSG00000026018 ENSMUST00000186970 Ica1l protein_coding Interval_120441 chr4 148643609 148644631 + 0 NA intron (ENSMUSG00000070577.5, intron 1 of 10) protein_coding-intron (ENSMUSG00000070577.5, intron 1 of 10) 803 ENSMUSG00000070577.5 ENSMUSG00000070577 ENSMUST00000105698 Gm572 protein_coding Interval_56522 chr14 119851438 119852861 + 0 NA intron (ENSMUSG00000053465.6, intron 1 of 1) protein_coding-intron (ENSMUSG00000053465.6, intron 1 of 1) 53171 ENSMUSG00000115639.1 ENSMUSG00000115639 ENSMUST00000228885 4930404K13Rik sense_intronic Interval_57355 chr15 9455186 9455482 + 0 NA intron (ENSMUSG00000039676.4, intron 1 of 3) protein_coding-intron (ENSMUSG00000039676.4, intron 1 of 4) 19306 ENSMUSG00000039676.4 ENSMUSG00000039676 ENSMUST00000226688 Capsl protein_coding Interval_39724 chr12 95519442 95520845 + 0 NA Intergenic Intergenic -99675 ENSMUSG00000064412.1 ENSMUSG00000064412 ENSMUST00000082478 Gm22246 snRNA Interval_48311 chr13 98015744 98017320 + 0 NA promoter-TSS (ENSMUSG00000021662.11) protein_coding-promoter-TSS (ENSMUSG00000021662.11) -115 ENSMUSG00000021662.11 ENSMUSG00000021662 ENSMUST00000224866 Arhgef28 protein_coding Interval_55998 chr14 103843103 103845141 + 0 NA promoter-TSS (ENSMUSG00000022122.15) protein_coding-promoter-TSS (ENSMUSG00000022122.15) -427 ENSMUSG00000022122.15 ENSMUSG00000022122 ENSMUST00000227824 Ednrb protein_coding Interval_984 chr1 13639379 13639732 + 0 NA intron (ENSMUSG00000025937.6, intron 3 of 6) protein_coding-intron (ENSMUSG00000025937.6, intron 3 of 6) -1144 ENSMUSG00000025937.6 ENSMUSG00000025937 ENSMUST00000156222 Lactb2 protein_coding Interval_90696 chr2 31990046 31990354 + 0 NA intron (ENSMUSG00000001855.15, intron 6 of 6) protein_coding-intron (ENSMUSG00000001855.15, intron 9 of 35) -4621 ENSMUSG00000001855.15 ENSMUSG00000001855 ENSMUST00000124455 Nup214 protein_coding Interval_120248 chr4 144890678 144894993 + 0 NA promoter-TSS (ENSMUSG00000066026.14) protein_coding-promoter-TSS (ENSMUSG00000066026.14) 8 ENSMUSG00000066026.14 ENSMUSG00000066026 ENSMUST00000133265 Dhrs3 protein_coding Interval_78510 chr18 13884974 13885226 + 0 NA intron (ENSMUSG00000024420.9, intron 2 of 2) protein_coding-intron (ENSMUSG00000024420.9, intron 3 of 7) -8774 ENSMUSG00000024420.9 ENSMUSG00000024420 ENSMUST00000234025 Zfp521 protein_coding Interval_144038 chr7 19131139 19131992 + 0 NA promoter-TSS (ENSMUSG00000050428.7) protein_coding-promoter-TSS (ENSMUSG00000050428.7) -128 ENSMUSG00000050428.7 ENSMUSG00000050428 ENSMUST00000165913 Fbxo46 protein_coding Interval_27702 chr11 69559962 69561674 + 0 NA promoter-TSS (ENSMUSG00000003934.5) protein_coding-promoter-TSS (ENSMUSG00000003934.5) -613 ENSMUSG00000003934.5 ENSMUSG00000003934 ENSMUST00000004036 Efnb3 protein_coding Interval_53834 chr14 62459376 62459872 + 0 NA Intergenic Intergenic -3338 ENSMUSG00000021933.11 ENSMUSG00000021933 ENSMUST00000128573 Gucy1b2 protein_coding Interval_6465 chr1 110687135 110687501 + 0 NA Intergenic Intergenic 87297 ENSMUSG00000099926.1 ENSMUSG00000099926 ENSMUST00000189583 Gm6693 processed_pseudogene Interval_24535 chr11 34124840 34125033 + 0 NA Intergenic Intergenic -16891 ENSMUSG00000086243.1 ENSMUSG00000086243 ENSMUST00000131630 Gm12121 lincRNA Interval_66737 chr16 36827794 36829047 + 0 NA promoter-TSS (ENSMUSG00000022837.14) protein_coding-promoter-TSS (ENSMUSG00000022837.14) -27 ENSMUSG00000022837.14 ENSMUSG00000022837 ENSMUST00000153373 Iqcb1 protein_coding Interval_101272 chr2 180024299 180025592 + 0 NA promoter-TSS (ENSMUSG00000039108.14) protein_coding-promoter-TSS (ENSMUSG00000039108.14) -2964 ENSMUSG00000039108.14 ENSMUSG00000039108 ENSMUST00000140257 Lsm14b protein_coding Interval_122399 chr5 22002008 22002957 + 0 NA TTS (ENSMUSG00000042453.14) protein_coding-TTS (ENSMUSG00000042453.14) -44496 ENSMUSG00000105766.1 ENSMUSG00000105766 ENSMUST00000198176 Gm19666 TEC Interval_65693 chr16 25483919 25484376 + 0 NA Intergenic Intergenic -40874 ENSMUSG00000116828.1 ENSMUSG00000116828 ENSMUST00000232460 Gm18896 processed_pseudogene Interval_84708 chr19 15800869 15802321 + 0 NA Intergenic Intergenic -1463 ENSMUSG00000117995.1 ENSMUSG00000117995 ENSMUST00000237461 Gm50348 lincRNA Interval_86917 chr19 44870931 44871383 + 0 NA Intergenic Intergenic 20148 ENSMUSG00000117967.1 ENSMUSG00000117967 ENSMUST00000236477 Gm5246 processed_pseudogene Interval_40999 chr12 110522744 110523988 + 0 NA intron (ENSMUSG00000017843.14, intron 4 of 12) protein_coding-intron (ENSMUSG00000017843.14, intron 2 of 13) -37750 ENSMUSG00000113585.1 ENSMUSG00000113585 ENSMUST00000222863 Gm19605 processed_transcript Interval_174267 chrX 142680591 142682702 + 0 NA promoter-TSS (ENSMUSG00000047045.17) protein_coding-promoter-TSS (ENSMUSG00000047045.17) -47631 ENSMUSG00000048600.7 ENSMUSG00000048600 ENSMUST00000155951 Gm5763 processed_pseudogene Interval_82518 chr18 74836910 74837678 + 0 NA Intergenic Intergenic 43911 ENSMUSG00000036880.10 ENSMUSG00000036880 ENSMUST00000237306 Acaa2 protein_coding Interval_111862 chr4 32070910 32071194 + 0 NA Intergenic Intergenic 19314 ENSMUSG00000082398.1 ENSMUSG00000082398 ENSMUST00000118472 Gm11927 processed_pseudogene Interval_156054 chr8 43256919 43257876 + 0 NA Intergenic Intergenic 49539 ENSMUSG00000051176.6 ENSMUSG00000051176 ENSMUST00000082120 Zfp42 protein_coding Interval_134493 chr6 29118254 29119375 + 0 NA Intergenic Intergenic -5208 ENSMUSG00000064436.1 ENSMUSG00000064436 ENSMUST00000082502 Gm25589 snRNA Interval_55946 chr14 103069640 103070901 + 0 NA promoter-TSS (ENSMUSG00000022125.7) protein_coding-promoter-TSS (ENSMUSG00000022125.7) -1460 ENSMUSG00000022125.7 ENSMUSG00000022125 ENSMUST00000227117 Cln5 protein_coding Interval_20571 chr10 119120334 119122478 + 0 NA intron (ENSMUSG00000112609.1, intron 2 of 2) lincRNA-intron (ENSMUSG00000112609.1, intron 2 of 2) 9782 ENSMUSG00000112609.1 ENSMUSG00000112609 ENSMUST00000220151 Gm47480 lincRNA Interval_79039 chr18 24121034 24122350 + 0 NA exon (ENSMUSG00000047989.11, exon 1 of 6) protein_coding-exon (ENSMUSG00000047989.11, exon 1 of 6) 261 ENSMUSG00000047989.11 ENSMUSG00000047989 ENSMUST00000125169 Ino80c protein_coding Interval_123482 chr5 32818094 32818568 + 0 NA intron (ENSMUSG00000054280.14, intron 3 of 4) protein_coding-intron (ENSMUSG00000054280.14, intron 9 of 10) 8778 ENSMUSG00000093574.1 ENSMUSG00000093574 ENSMUST00000144673 Gm20671 protein_coding Interval_91441 chr2 38897221 38897480 + 0 NA intron (ENSMUSG00000063972.13, intron 1 of 5) protein_coding-intron (ENSMUSG00000063972.13, intron 1 of 10) -34628 ENSMUSG00000046618.7 ENSMUSG00000046618 ENSMUST00000057279 Olfml2a protein_coding Interval_174837 chrX 169299747 169300041 + 0 NA intron (ENSMUSG00000031355.16, intron 12 of 14) protein_coding-intron (ENSMUSG00000031355.16, intron 10 of 12) 4885 ENSMUSG00000099179.1 ENSMUSG00000099179 ENSMUST00000184094 Gm27980 misc_RNA Interval_163651 chr9 23222419 23223954 + 0 NA promoter-TSS (ENSMUSG00000031963.8) protein_coding-promoter-TSS (ENSMUSG00000031963.8) -100 ENSMUSG00000031963.8 ENSMUSG00000031963 ENSMUST00000214050 Bmper protein_coding Interval_153626 chr8 4052069 4052300 + 0 NA Intergenic Intergenic -11763 ENSMUSG00000109255.1 ENSMUSG00000109255 ENSMUST00000208301 Gm7407 processed_pseudogene Interval_152648 chr7 135690930 135691669 + 0 NA intron (ENSMUSG00000031004.8, intron 13 of 13) protein_coding-intron (ENSMUSG00000031004.8, intron 13 of 13) -17895 ENSMUSG00000109910.1 ENSMUSG00000109910 ENSMUST00000211437 Gm45240 TEC Interval_167855 chr9 73093621 73095697 + 0 NA promoter-TSS (ENSMUSG00000032202.11) protein_coding-promoter-TSS (ENSMUSG00000032202.11) -7739 ENSMUSG00000092622.8 ENSMUSG00000092622 ENSMUST00000167514 Khdc3 protein_coding Interval_107826 chr3 115902245 115902535 + 0 NA intron (ENSMUSG00000033554.17, intron 4 of 7) protein_coding-intron (ENSMUSG00000033554.17, intron 4 of 7) -7980 ENSMUSG00000105108.1 ENSMUSG00000105108 ENSMUST00000199075 Gm42687 TEC Interval_115412 chr4 98743808 98744082 + 0 NA Intergenic Intergenic -1790 ENSMUSG00000090718.1 ENSMUSG00000090718 ENSMUST00000166016 Gm17376 pseudogene Interval_60519 chr15 74601555 74602608 + 0 NA Intergenic Intergenic 6147 ENSMUSG00000022603.9 ENSMUSG00000022603 ENSMUST00000175931 Mroh4 protein_coding Interval_71265 chr17 21739558 21741054 + 0 NA intron (ENSMUSG00000061544.13, intron 3 of 5) protein_coding-intron (ENSMUSG00000061544.13, intron 3 of 5) 6582 ENSMUSG00000061544.13 ENSMUSG00000061544 ENSMUST00000182603 Zfp229 protein_coding Interval_10809 chr1 175450191 175450636 + 0 NA intron (ENSMUSG00000026527.13, intron 2 of 17) protein_coding-intron (ENSMUSG00000026527.13, intron 1 of 15) -69737 ENSMUSG00000104343.1 ENSMUSG00000104343 ENSMUST00000194955 5730408A14Rik TEC Interval_113302 chr4 53270943 53271284 + 0 NA promoter-TSS (ENSMUSG00000086712.2) lincRNA-promoter-TSS (ENSMUSG00000086712.2) -5621 ENSMUSG00000086712.2 ENSMUSG00000086712 ENSMUST00000123044 AI427809 lincRNA Interval_43583 chr13 33831877 33832134 + 0 NA TTS (ENSMUSG00000069248.11) protein_coding-TTS (ENSMUSG00000069248.11) 11403 ENSMUSG00000069248.11 ENSMUSG00000069248 ENSMUST00000145221 Serpinb6e protein_coding Interval_142457 chr6 142470956 142471368 + 0 NA intron (ENSMUSG00000030244.7, intron 1 of 16) protein_coding-intron (ENSMUSG00000030244.7, intron 1 of 16) 36781 ENSMUSG00000030246.12 ENSMUSG00000030246 ENSMUST00000134191 Ldhb protein_coding Interval_101018 chr2 174279574 174280103 + 0 NA Intergenic Intergenic -6770 ENSMUSG00000099106.1 ENSMUSG00000099106 ENSMUST00000184715 Gm27899 misc_RNA Interval_47123 chr13 75962874 75963300 + 0 NA TTS (ENSMUSG00000077655.1) snoRNA-TTS (ENSMUSG00000077655.1) 700 ENSMUSG00000077655.1 ENSMUSG00000077655 ENSMUST00000104467 Gm23319 snoRNA Interval_5556 chr1 89785991 89786220 + 0 NA intron (ENSMUSG00000055013.16, intron 12 of 17) protein_coding-intron (ENSMUSG00000055013.16, intron 12 of 17) -3058 ENSMUSG00000055013.16 ENSMUSG00000055013 ENSMUST00000212924 Agap1 protein_coding Interval_164680 chr9 40547469 40548677 + 0 NA intron (ENSMUSG00000110922.1, intron 1 of 3) lincRNA-intron (ENSMUSG00000110922.1, intron 1 of 3) 713 ENSMUSG00000110922.1 ENSMUSG00000110922 ENSMUST00000216525 Gm35177 lincRNA Interval_80145 chr18 37851856 37852684 + 0 NA intron (ENSMUSG00000024456.16, intron 1 of 2) protein_coding-intron (ENSMUSG00000024456.16, intron 26 of 27) 2390 ENSMUSG00000098706.1 ENSMUSG00000098706 ENSMUST00000183927 Mir6979 miRNA Interval_75737 chr17 70950962 70951518 + 0 NA Intergenic Intergenic -5884 ENSMUSG00000117200.1 ENSMUSG00000117200 ENSMUST00000233596 Gm49905 processed_pseudogene Interval_57443 chr15 10990495 10990969 + 0 NA intron (ENSMUSG00000022244.7, intron 3 of 3) protein_coding-intron (ENSMUSG00000022244.7, intron 4 of 4) 7326 ENSMUSG00000022244.7 ENSMUSG00000022244 ENSMUST00000228886 Amacr protein_coding Interval_166914 chr9 63906745 63907037 + 0 NA Intergenic Intergenic 8626 ENSMUSG00000110768.1 ENSMUSG00000110768 ENSMUST00000215935 Gm18541 processed_pseudogene Interval_92371 chr2 59327590 59328083 + 0 NA intron (ENSMUSG00000026991.20, intron 10 of 12) protein_coding-intron (ENSMUSG00000026991.20, intron 12 of 21) 59635 ENSMUSG00000087455.7 ENSMUSG00000087455 ENSMUST00000155111 5330411J11Rik processed_transcript Interval_153841 chr8 9550653 9552325 + 0 NA intron (ENSMUSG00000079157.4, intron 3 of 3) protein_coding-intron (ENSMUSG00000079157.4, intron 1 of 2) 16760 ENSMUSG00000064618.1 ENSMUSG00000064618 ENSMUST00000082684 n-R5s95 rRNA Interval_102016 chr3 15028262 15028881 + 0 NA Intergenic Intergenic -54019 ENSMUSG00000098186.1 ENSMUSG00000098186 ENSMUST00000182302 Gm7132 processed_pseudogene Interval_21481 chr10 128843490 128844043 + 0 NA intron (ENSMUSG00000078427.3, intron 4 of 11) protein_coding-intron (ENSMUSG00000078427.3, intron 4 of 10) 21834 ENSMUSG00000078427.3 ENSMUSG00000078427 ENSMUST00000220381 Sarnp protein_coding Interval_51099 chr14 22835295 22836714 + 0 NA intron (ENSMUSG00000063458.13, intron 6 of 6) protein_coding-intron (ENSMUSG00000063458.13, intron 6 of 6) -60760 ENSMUSG00000114967.1 ENSMUSG00000114967 ENSMUST00000224513 Gm7473 processed_pseudogene Interval_138512 chr6 88831427 88833115 + 0 NA Intergenic Intergenic 6884 ENSMUSG00000030083.11 ENSMUSG00000030083 ENSMUST00000204932 Abtb1 protein_coding Interval_154859 chr8 24437895 24439361 + 0 NA exon (ENSMUSG00000056313.5, exon 1 of 1) protein_coding-exon (ENSMUSG00000056313.5, exon 1 of 1) 356 ENSMUSG00000056313.5 ENSMUSG00000056313 ENSMUST00000052622 Tcim protein_coding Interval_110766 chr4 8153586 8155277 + 0 NA intron (ENSMUSG00000041261.9, intron 8 of 8) protein_coding-intron (ENSMUSG00000041261.9, intron 8 of 8) 12922 ENSMUSG00000079993.2 ENSMUSG00000079993 ENSMUST00000116110 Gm11799 processed_pseudogene Interval_34883 chr12 12938561 12939245 + 0 NA intron (ENSMUSG00000037169.15, intron 1 of 1) protein_coding-intron (ENSMUSG00000037169.15, intron 2 of 2) 2922 ENSMUSG00000037169.15 ENSMUSG00000037169 ENSMUST00000151534 Mycn protein_coding Interval_75995 chr17 74254566 74255141 + 0 NA exon (ENSMUSG00000058704.9, exon 1 of 1) protein_coding-exon (ENSMUSG00000058704.9, exon 1 of 1) 40010 ENSMUSG00000058704.9 ENSMUSG00000058704 ENSMUST00000232861 Memo1 protein_coding Interval_157065 chr8 64898790 64899328 + 0 NA Intergenic Intergenic 12918 ENSMUSG00000109613.1 ENSMUSG00000109613 ENSMUST00000211544 Gm45405 processed_pseudogene Interval_109515 chr3 143379096 143379487 + 0 NA Intergenic Intergenic 10715 ENSMUSG00000105917.1 ENSMUSG00000105917 ENSMUST00000196087 Gm43612 lincRNA Interval_161722 chr8 122335713 122337189 + 0 NA TTS (ENSMUSG00000049577.15) protein_coding-TTS (ENSMUSG00000049577.15) 1820 ENSMUSG00000049577.15 ENSMUSG00000049577 ENSMUST00000212315 Zfpm1 protein_coding Interval_18989 chr10 93602653 93602845 + 0 NA intron (ENSMUSG00000097407.1, intron 3 of 3) lincRNA-intron (ENSMUSG00000097407.1, intron 3 of 3) -13043 ENSMUSG00000020018.6 ENSMUSG00000020018 ENSMUST00000020203 Snrpf protein_coding Interval_76171 chr17 75937531 75937865 + 0 NA Intergenic Intergenic 76675 ENSMUSG00000117539.1 ENSMUSG00000117539 ENSMUST00000234389 Gm4710 lincRNA Interval_49448 chr13 112076205 112076644 + 0 NA Intergenic Intergenic -61692 ENSMUSG00000114361.1 ENSMUSG00000114361 ENSMUST00000224924 Gm31104 processed_pseudogene Interval_118322 chr4 130295248 130295675 + 0 NA Intergenic Intergenic -13134 ENSMUSG00000028773.8 ENSMUSG00000028773 ENSMUST00000070532 Fabp3 protein_coding Interval_173711 chrX 102304750 102306109 + 0 NA intron (ENSMUSG00000085568.7, intron 3 of 3) protein_coding-intron (ENSMUSG00000067567.12, intron 10 of 10) -49904 ENSMUSG00000093428.1 ENSMUSG00000093428 ENSMUST00000176507 Gm26318 miRNA Interval_64658 chr16 13961159 13962708 + 0 NA Intergenic Intergenic 7524 ENSMUSG00000089207.1 ENSMUSG00000089207 ENSMUST00000158582 Gm26213 rRNA Interval_142008 chr6 136521290 136521460 + 0 NA exon (ENSMUSG00000030213.12, exon 1 of 1) protein_coding-exon (ENSMUSG00000030213.12, exon 1 of 1) -2344 ENSMUSG00000107702.1 ENSMUSG00000107702 ENSMUST00000204157 Gm44140 bidirectional_promoter_lncRNA Interval_131017 chr5 134571284 134572505 + 0 NA promoter-TSS (ENSMUSG00000106323.1) miRNA-promoter-TSS (ENSMUSG00000106323.1) -182 ENSMUSG00000106323.1 ENSMUSG00000106323 ENSMUST00000196812 Mir7228 miRNA Interval_2460 chr1 39520488 39521577 + 0 NA Intergenic Intergenic 1499 ENSMUSG00000065629.2 ENSMUSG00000065629 ENSMUST00000083695 Gm24826 snoRNA Interval_121532 chr5 3284269 3285559 + 0 NA TTS (ENSMUSG00000106658.1) lincRNA-TTS (ENSMUSG00000106658.1) 14595 ENSMUSG00000106658.1 ENSMUSG00000106658 ENSMUST00000197473 Gm36548 lincRNA Interval_77718 chr17 94644854 94645116 + 0 NA Intergenic Intergenic -15412 ENSMUSG00000117382.1 ENSMUSG00000117382 ENSMUST00000234855 Gm50005 processed_pseudogene Interval_107636 chr3 109062646 109063244 + 0 NA Intergenic Intergenic 7311 ENSMUSG00000105371.1 ENSMUSG00000105371 ENSMUST00000200208 Gm44384 miRNA Interval_126938 chr5 97715916 97716106 + 0 NA Intergenic Intergenic -258990 ENSMUSG00000050553.3 ENSMUSG00000050553 ENSMUST00000059657 Gk2 protein_coding Interval_80069 chr18 37264556 37266492 + 0 NA exon (ENSMUSG00000051663.4, exon 1 of 1) protein_coding-exon (ENSMUSG00000051663.4, exon 1 of 1) 586 ENSMUSG00000051663.4 ENSMUSG00000051663 ENSMUST00000052366 Pcdhb1 protein_coding Interval_172892 chrX 52909692 52910255 + 0 NA Intergenic Intergenic 11385 ENSMUSG00000081684.4 ENSMUSG00000081684 ENSMUST00000117295 Rps2-ps13 processed_pseudogene Interval_120389 chr4 148276994 148277660 + 0 NA intron (ENSMUSG00000041544.11, intron 1 of 20) protein_coding-intron (ENSMUSG00000041544.11, intron 1 of 20) -16576 ENSMUSG00000041544.11 ENSMUSG00000041544 ENSMUST00000129734 Disp3 protein_coding Interval_21456 chr10 128715504 128716069 + 0 NA TTS (ENSMUSG00000025359.10) protein_coding-TTS (ENSMUSG00000025359.10) 10606 ENSMUSG00000025359.10 ENSMUSG00000025359 ENSMUST00000054125 Pmel protein_coding Interval_114345 chr4 74012480 74014335 + 0 NA promoter-TSS (ENSMUSG00000049122.17) protein_coding-promoter-TSS (ENSMUSG00000049122.17) -30981 ENSMUSG00000081048.1 ENSMUSG00000081048 ENSMUST00000122355 Gm11760 processed_pseudogene Interval_154302 chr8 14193039 14193453 + 0 NA intron (ENSMUSG00000047495.15, intron 1 of 13) protein_coding-intron (ENSMUSG00000047495.15, intron 1 of 14) 56936 ENSMUSG00000085371.1 ENSMUSG00000085371 ENSMUST00000128343 Gm3160 processed_pseudogene Interval_153232 chr7 142663991 142665276 + 0 NA promoter-TSS (ENSMUSG00000086266.1) antisense-promoter-TSS (ENSMUSG00000086266.1) 4940 ENSMUSG00000086266.1 ENSMUSG00000086266 ENSMUST00000124393 Igf2os antisense Interval_121854 chr5 8850466 8851303 + 0 NA promoter-TSS (ENSMUSG00000028970.9) protein_coding-promoter-TSS (ENSMUSG00000028970.9) -503 ENSMUSG00000028970.9 ENSMUSG00000028970 ENSMUST00000196048 Abcb1b protein_coding Interval_49758 chr13 114603040 114603372 + 0 NA intron (ENSMUSG00000114879.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000114879.1, intron 1 of 1) 3878 ENSMUSG00000114879.1 ENSMUSG00000114879 ENSMUST00000224961 4930467J12Rik lincRNA Interval_96802 chr2 128418767 128419170 + 0 NA intron (ENSMUSG00000074813.14, intron 2 of 2) lincRNA-intron (ENSMUSG00000074813.14, intron 1 of 1) -4686 ENSMUSG00000079053.3 ENSMUSG00000079053 ENSMUST00000131961 Gm14010 lincRNA Interval_28897 chr11 79131717 79132507 + 0 NA intron (ENSMUSG00000018334.18, intron 1 of 12) protein_coding-intron (ENSMUSG00000018334.18, intron 1 of 18) -72276 ENSMUSG00000018334.18 ENSMUSG00000018334 ENSMUST00000129463 Ksr1 protein_coding Interval_136348 chr6 53612138 53613062 + 0 NA TTS (ENSMUSG00000053007.9) protein_coding-TTS (ENSMUSG00000053007.9) -55170 ENSMUSG00000108004.1 ENSMUSG00000108004 ENSMUST00000204451 Gm44080 TEC Interval_26355 chr11 57176105 57177078 + 0 NA promoter-TSS (ENSMUSG00000020524.16) protein_coding-promoter-TSS (ENSMUSG00000020524.16) 73 ENSMUSG00000020524.16 ENSMUSG00000020524 ENSMUST00000173531 Gria1 protein_coding Interval_47056 chr13 74906227 74906457 + 0 NA Intergenic Intergenic 42037 ENSMUSG00000086743.2 ENSMUSG00000086743 ENSMUST00000129154 Hnrnpa1l2-ps processed_pseudogene Interval_19950 chr10 111472810 111474358 + 0 NA intron (ENSMUSG00000058799.16, intron 1 of 13) protein_coding-intron (ENSMUSG00000058799.16, intron 1 of 15) 357 ENSMUSG00000058799.16 ENSMUSG00000058799 ENSMUST00000219718 Nap1l1 protein_coding Interval_86080 chr19 36409287 36410360 + 0 NA promoter-TSS (ENSMUSG00000024805.16) protein_coding-promoter-TSS (ENSMUSG00000024805.16) 5376 ENSMUSG00000114409.1 ENSMUSG00000114409 ENSMUST00000225814 Gm9042 processed_pseudogene Interval_3797 chr1 63129546 63130868 + 0 NA intron (ENSMUSG00000084799.7, intron 1 of 3) lincRNA-intron (ENSMUSG00000084799.7, intron 1 of 3) 13089 ENSMUSG00000101599.1 ENSMUSG00000101599 ENSMUST00000185480 Gm20342 lincRNA Interval_80460 chr18 42368904 42370307 + 0 NA Intergenic Intergenic -25470 ENSMUSG00000024497.4 ENSMUSG00000024497 ENSMUST00000237247 Pou4f3 protein_coding Interval_90461 chr2 30601603 30602001 + 0 NA intron (ENSMUSG00000047363.4, intron 1 of 1) protein_coding-intron (ENSMUSG00000047363.4, intron 1 of 1) -3415 ENSMUSG00000047363.4 ENSMUSG00000047363 ENSMUST00000129719 Cstad protein_coding Interval_68630 chr16 81910500 81910710 + 0 NA intron (ENSMUSG00000116865.1, intron 2 of 2) lincRNA-intron (ENSMUSG00000116865.1, intron 2 of 2) 1607 ENSMUSG00000116678.1 ENSMUSG00000116678 ENSMUST00000232535 Pgk1-ps1 processed_pseudogene Interval_41461 chr12 114433564 114434995 + 0 NA TTS (ENSMUSG00000076680.1) IG_V_gene-TTS (ENSMUSG00000076680.1) 965 ENSMUSG00000076680.1 ENSMUSG00000076680 ENSMUST00000103489 Ighv6-6 IG_V_gene Interval_147259 chr7 65212748 65213812 + 0 NA promoter-TSS (ENSMUSG00000108587.1) lincRNA-promoter-TSS (ENSMUSG00000108587.1) 89 ENSMUSG00000108587.1 ENSMUSG00000108587 ENSMUST00000205499 1810049I09Rik lincRNA Interval_30330 chr11 93667286 93667492 + 0 NA Intergenic Intergenic 16630 ENSMUSG00000082453.1 ENSMUSG00000082453 ENSMUST00000120917 Gm11502 processed_pseudogene Interval_163011 chr9 14512987 14513838 + 0 NA Intergenic Intergenic 5605 ENSMUSG00000004096.9 ENSMUSG00000004096 ENSMUST00000216619 Cwc15 protein_coding Interval_1920 chr1 34548040 34548403 + 0 NA intron (ENSMUSG00000037529.13, intron 4 of 4) protein_coding-intron (ENSMUSG00000037529.13, intron 4 of 4) -9661 ENSMUSG00000101803.1 ENSMUSG00000101803 ENSMUST00000189108 Gm28419 processed_pseudogene Interval_171649 chr9 119943589 119943987 + 0 NA intron (ENSMUSG00000032514.11, intron 5 of 19) protein_coding-intron (ENSMUSG00000032514.11, intron 5 of 28) -10936 ENSMUSG00000032513.8 ENSMUSG00000032513 ENSMUST00000213409 Gorasp1 protein_coding Interval_156950 chr8 62203081 62203475 + 0 NA Intergenic Intergenic -9066 ENSMUSG00000110252.1 ENSMUSG00000110252 ENSMUST00000211074 Gm2961 processed_pseudogene Interval_173914 chrX 110814189 110815553 + 0 NA exon (ENSMUSG00000056854.4, exon 1 of 1) protein_coding-exon (ENSMUSG00000056854.4, exon 1 of 1) 591 ENSMUSG00000056854.4 ENSMUSG00000056854 ENSMUST00000078229 Pou3f4 protein_coding Interval_16115 chr10 60813498 60815276 + 0 NA promoter-TSS (ENSMUSG00000112592.1) TEC-promoter-TSS (ENSMUSG00000112592.1) -64 ENSMUSG00000112592.1 ENSMUSG00000112592 ENSMUST00000218180 Gm19972 TEC Interval_128373 chr5 112876797 112877425 + 0 NA intron (ENSMUSG00000072720.9, intron 3 of 43) protein_coding-intron (ENSMUSG00000072720.9, intron 3 of 43) -4615 ENSMUSG00000072720.9 ENSMUSG00000072720 ENSMUST00000183273 Myo18b protein_coding Interval_65782 chr16 28827484 28829148 + 0 NA exon (ENSMUSG00000051065.9, exon 2 of 2) protein_coding-exon (ENSMUSG00000051065.9, exon 2 of 2) 8051 ENSMUSG00000051065.9 ENSMUSG00000051065 ENSMUST00000232571 Mb21d2 protein_coding Interval_163755 chr9 25309706 25310208 + 0 NA Intergenic Intergenic -34482 ENSMUSG00000111004.1 ENSMUSG00000111004 ENSMUST00000214972 Gm48272 processed_pseudogene Interval_158315 chr8 81080366 81081978 + 0 NA Intergenic Intergenic 19838 ENSMUSG00000109980.1 ENSMUSG00000109980 ENSMUST00000210771 Gm45538 lincRNA Interval_10430 chr1 170813131 170813381 + 0 NA intron (ENSMUSG00000026663.6, intron 9 of 15) protein_coding-intron (ENSMUSG00000026663.6, intron 9 of 15) -18885 ENSMUSG00000026663.6 ENSMUSG00000026663 ENSMUST00000182787 Atf6 protein_coding Interval_50169 chr14 8483103 8483402 + 0 NA intron (ENSMUSG00000021747.12, intron 12 of 15) protein_coding-intron (ENSMUSG00000021747.12, intron 12 of 15) 74335 ENSMUSG00000114533.1 ENSMUSG00000114533 ENSMUST00000224382 Gm8416 processed_pseudogene Interval_29363 chr11 83444822 83445429 + 0 NA intron (ENSMUSG00000020682.17, intron 4 of 7) protein_coding-intron (ENSMUSG00000020682.17, intron 4 of 7) 4994 ENSMUSG00000035085.5 ENSMUSG00000035085 ENSMUST00000188702 1700020L24Rik protein_coding Interval_109690 chr3 146010157 146011846 + 0 NA intron (ENSMUSG00000036863.12, intron 4 of 6) protein_coding-intron (ENSMUSG00000036863.12, intron 4 of 6) 22864 ENSMUSG00000036863.12 ENSMUSG00000036863 ENSMUST00000195918 Syde2 protein_coding Interval_75425 chr17 66483715 66486842 + 0 NA Intergenic Intergenic 34392 ENSMUSG00000023460.13 ENSMUSG00000023460 ENSMUST00000146279 Rab12 protein_coding Interval_80944 chr18 50841922 50843645 + 0 NA Intergenic Intergenic -160321 ENSMUSG00000118088.1 ENSMUSG00000118088 ENSMUST00000236182 Gm3815 processed_pseudogene Interval_34283 chr11 121963244 121964849 + 0 NA Intergenic Intergenic 6639 ENSMUSG00000082831.1 ENSMUSG00000082831 ENSMUST00000122407 Gm12591 unprocessed_pseudogene Interval_290 KZ289089.1 123467 124526 + 0 NA NA NA NA NA Interval_84732 chr19 16006727 16007068 + 0 NA intron (ENSMUSG00000097557.2, intron 2 of 2) bidirectional_promoter_lncRNA-intron (ENSMUSG00000097557.2, intron 2 of 2) -18554 ENSMUSG00000117711.1 ENSMUSG00000117711 ENSMUST00000235413 Rpl37-ps1 processed_pseudogene Interval_128485 chr5 113596204 113597634 + 0 NA Intergenic Intergenic 18131 ENSMUSG00000063430.9 ENSMUSG00000063430 ENSMUST00000198673 Wscd2 protein_coding Interval_148487 chr7 81673313 81673864 + 0 NA intron (ENSMUSG00000025813.14, intron 1 of 8) protein_coding-intron (ENSMUSG00000025813.14, intron 1 of 8) 3860 ENSMUSG00000088057.1 ENSMUSG00000088057 ENSMUST00000157432 Gm26149 snRNA Interval_62463 chr15 93200840 93201176 + 0 NA Intergenic Intergenic 4413 ENSMUSG00000097989.1 ENSMUSG00000097989 ENSMUST00000182581 Gm4335 processed_pseudogene Interval_8570 chr1 143057043 143057783 + 0 NA Intergenic Intergenic 37203 ENSMUSG00000101795.2 ENSMUSG00000101795 ENSMUST00000185806 Gm5835 processed_pseudogene Interval_145095 chr7 29993492 29994239 + 0 NA intron (ENSMUSG00000074221.12, intron 4 of 7) protein_coding-intron (ENSMUSG00000074221.12, intron 2 of 7) 8609 ENSMUSG00000074221.12 ENSMUSG00000074221 ENSMUST00000177931 Zfp568 protein_coding Interval_25391 chr11 47276444 47276643 + 0 NA intron (ENSMUSG00000020354.15, intron 2 of 6) protein_coding-intron (ENSMUSG00000020354.15, intron 2 of 7) -264889 ENSMUSG00000082792.1 ENSMUSG00000082792 ENSMUST00000121420 Gm12176 processed_pseudogene Interval_150422 chr7 110312357 110312762 + 0 NA intron (ENSMUSG00000038371.15, intron 37 of 39) protein_coding-intron (ENSMUSG00000038371.15, intron 38 of 40) 10558 ENSMUSG00000110102.1 ENSMUSG00000110102 ENSMUST00000210182 Gm9132 processed_pseudogene Interval_53078 chr14 54265227 54265536 + 0 NA exon (ENSMUSG00000040997.14, exon 5 of 7) protein_coding-exon (ENSMUSG00000040997.14, exon 5 of 7) 6149 ENSMUSG00000040997.14 ENSMUSG00000040997 ENSMUST00000197807 Abhd4 protein_coding Interval_136836 chr6 61179848 61181273 + 0 NA promoter-TSS (ENSMUSG00000039578.17) protein_coding-promoter-TSS (ENSMUSG00000039578.17) -6035 ENSMUSG00000097924.2 ENSMUSG00000097924 ENSMUST00000181288 A730020E08Rik bidirectional_promoter_lncRNA Interval_11016 chr1 178414042 178414343 + 0 NA intron (ENSMUSG00000026495.8, intron 1 of 6) protein_coding-intron (ENSMUSG00000026495.8, intron 1 of 6) 8107 ENSMUSG00000026495.8 ENSMUSG00000026495 ENSMUST00000192905 Efcab2 protein_coding Interval_70109 chr17 5397214 5397881 + 0 NA intron (ENSMUSG00000101133.1, intron 2 of 3) antisense-intron (ENSMUSG00000101133.1, intron 2 of 3) 8784 ENSMUSG00000101133.1 ENSMUSG00000101133 ENSMUST00000190732 Gm29050 antisense Interval_15210 chr10 43385130 43385567 + 0 NA intron (ENSMUSG00000038240.13, intron 4 of 7) protein_coding-intron (ENSMUSG00000038240.13, intron 4 of 7) -11428 ENSMUSG00000089839.1 ENSMUSG00000089839 ENSMUST00000160308 Rps19-ps11 processed_pseudogene Interval_43454 chr13 31321289 31323072 + 0 NA Intergenic Intergenic 8587 ENSMUSG00000087662.2 ENSMUSG00000087662 ENSMUST00000129791 Gm11373 lincRNA Interval_61012 chr15 78763852 78765313 + 0 NA intron (ENSMUSG00000018169.12, intron 2 of 2) protein_coding-intron (ENSMUSG00000018169.12, intron 3 of 7) 2582 ENSMUSG00000018169.12 ENSMUSG00000018169 ENSMUST00000128389 Mfng protein_coding Interval_50348 chr14 11978222 11978926 + 0 NA intron (ENSMUSG00000085883.2, intron 1 of 1) protein_coding-intron (ENSMUSG00000021745.14, intron 4 of 29) 2634 ENSMUSG00000085883.2 ENSMUSG00000085883 ENSMUST00000151564 Gm3848 antisense Interval_11618 chr1 183344881 183346037 + 0 NA promoter-TSS (ENSMUSG00000056050.13) protein_coding-promoter-TSS (ENSMUSG00000056050.13) 55 ENSMUSG00000056050.13 ENSMUSG00000056050 ENSMUST00000194543 Mia3 protein_coding Interval_50017 chr13 119735493 119735976 + 0 NA intron (ENSMUSG00000095930.1, intron 1 of 3) protein_coding-intron (ENSMUSG00000095930.1, intron 1 of 3) 2660 ENSMUSG00000095930.1 ENSMUSG00000095930 ENSMUST00000178973 Nim1k protein_coding Interval_21701 chr11 3788880 3789152 + 0 NA TTS (ENSMUSG00000088352.1) snoRNA-TTS (ENSMUSG00000088352.1) 124 ENSMUSG00000088352.1 ENSMUSG00000088352 ENSMUST00000157727 Gm24013 snoRNA Interval_31114 chr11 98226482 98227546 + 0 NA intron (ENSMUSG00000003119.14, intron 6 of 13) protein_coding-intron (ENSMUSG00000003119.14, intron 6 of 12) -11604 ENSMUSG00000098827.1 ENSMUSG00000098827 ENSMUST00000184250 Gm27399 miRNA Interval_42634 chr13 17403217 17403732 + 0 NA intron (ENSMUSG00000055137.7, intron 9 of 13) protein_coding-intron (ENSMUSG00000055137.7, intron 9 of 13) -37316 ENSMUSG00000094665.1 ENSMUSG00000094665 ENSMUST00000179101 Gm24873 snRNA Interval_54556 chr14 70658432 70659873 + 0 NA promoter-TSS (ENSMUSG00000047911.6) protein_coding-promoter-TSS (ENSMUSG00000047911.6) 92 ENSMUSG00000047911.6 ENSMUSG00000047911 ENSMUST00000228473 Npm2 protein_coding Interval_159473 chr8 94941967 94943561 + 0 NA TTS (ENSMUSG00000061577.12) protein_coding-TTS (ENSMUSG00000061577.12) 19070 ENSMUSG00000061577.12 ENSMUSG00000061577 ENSMUST00000142991 Adgrg5 protein_coding Interval_115125 chr4 91237165 91237491 + 0 NA Intergenic Intergenic 80646 ENSMUSG00000081876.1 ENSMUSG00000081876 ENSMUST00000119935 Gm12644 processed_pseudogene Interval_100955 chr2 173610853 173611237 + 0 NA intron (ENSMUSG00000055897.13, intron 1 of 1) transcribed_unprocessed_pseudogene-intron (ENSMUSG00000055897.13, intron 1 of 1) -19732 ENSMUSG00000055897.13 ENSMUSG00000055897 ENSMUST00000133185 Ppp4r1l-ps transcribed_unprocessed_pseudogene Interval_131989 chr5 141883720 141884324 + 0 NA intron (ENSMUSG00000039683.16, intron 1 of 40) protein_coding-intron (ENSMUSG00000039683.16, intron 1 of 40) -268020 ENSMUSG00000085540.1 ENSMUSG00000085540 ENSMUST00000150385 Gm16036 antisense Interval_20729 chr10 120578890 120579132 + 0 NA Intergenic Intergenic -26526 ENSMUSG00000088924.1 ENSMUSG00000088924 ENSMUST00000158299 Gm24298 snoRNA Interval_74393 chr17 49889484 49890271 + 0 NA intron (ENSMUSG00000023999.14, intron 1 of 7) protein_coding-intron (ENSMUSG00000023999.14, intron 1 of 7) 6090 ENSMUSG00000090227.1 ENSMUSG00000090227 ENSMUST00000159471 Gm16554 antisense Interval_19816 chr10 109560444 109561705 + 0 NA Intergenic Intergenic -87705 ENSMUSG00000112260.1 ENSMUSG00000112260 ENSMUST00000219153 3110043J17Rik TEC Interval_160519 chr8 110240321 110240851 + 0 NA Intergenic Intergenic 24921 ENSMUSG00000046441.5 ENSMUSG00000046441 ENSMUST00000056972 Cmtr2 protein_coding Interval_8038 chr1 135357521 135360111 + 0 NA intron (ENSMUSG00000048096.7, intron 1 of 2) protein_coding-intron (ENSMUSG00000048096.7, intron 1 of 2) -4994 ENSMUSG00000087859.1 ENSMUSG00000087859 ENSMUST00000157234 Gm22796 snRNA Interval_147831 chr7 73886090 73886542 + 0 NA Intergenic Intergenic 61218 ENSMUSG00000108375.1 ENSMUSG00000108375 ENSMUST00000205875 Gm45003 TEC Interval_140494 chr6 118807930 118808804 + 0 NA intron (ENSMUSG00000051331.16, intron 3 of 47) protein_coding-intron (ENSMUSG00000051331.16, intron 3 of 46) -26533 ENSMUSG00000089115.1 ENSMUSG00000089115 ENSMUST00000158490 Gm25905 snRNA Interval_127947 chr5 109742862 109744515 + 0 NA intron (ENSMUSG00000072762.9, intron 1 of 3) protein_coding-intron (ENSMUSG00000072762.9, intron 1 of 2) 7909 ENSMUSG00000072762.9 ENSMUSG00000072762 ENSMUST00000100937 4930522L14Rik protein_coding Interval_101063 chr2 174838086 174838872 + 0 NA exon (ENSMUSG00000084795.1, exon 1 of 2) processed_transcript-exon (ENSMUSG00000084795.1, exon 1 of 2) 155 ENSMUSG00000084795.1 ENSMUSG00000084795 ENSMUST00000144208 Gm14617 processed_transcript Interval_7313 chr1 128803610 128803912 + 0 NA Intergenic Intergenic -29340 ENSMUSG00000097283.1 ENSMUSG00000097283 ENSMUST00000181951 Gm26686 lincRNA Interval_63608 chr15 102324948 102326713 + 0 NA promoter-TSS (ENSMUSG00000001289.12) protein_coding-promoter-TSS (ENSMUSG00000001289.12) -359 ENSMUSG00000001289.12 ENSMUSG00000001289 ENSMUST00000165717 Pfdn5 protein_coding Interval_147056 chr7 60238085 60239004 + 0 NA Intergenic Intergenic -34316 ENSMUSG00000109451.1 ENSMUSG00000109451 ENSMUST00000208834 Gm18129 processed_pseudogene Interval_62057 chr15 86140186 86141109 + 0 NA exon (ENSMUSG00000035891.16, exon 13 of 13) protein_coding-exon (ENSMUSG00000035891.16, exon 13 of 13) -8937 ENSMUSG00000088357.1 ENSMUSG00000088357 ENSMUST00000157732 Gm24011 misc_RNA Interval_127527 chr5 104838145 104839432 + 0 NA intron (ENSMUSG00000072774.10, intron 1 of 1) protein_coding-intron (ENSMUSG00000072774.10, intron 1 of 4) 21005 ENSMUSG00000072774.10 ENSMUSG00000072774 ENSMUST00000191135 Zfp951 protein_coding Interval_90828 chr2 32857629 32857886 + 0 NA Intergenic Intergenic -10551 ENSMUSG00000026797.16 ENSMUSG00000026797 ENSMUST00000208840 Stxbp1 protein_coding Interval_113133 chr4 48552338 48552966 + 0 NA TTS (ENSMUSG00000039693.11) protein_coding-TTS (ENSMUSG00000039693.11) 12106 ENSMUSG00000039693.11 ENSMUSG00000039693 ENSMUST00000132360 Msantd3 protein_coding Interval_83613 chr18 90572475 90572911 + 0 NA Intergenic Intergenic -7084 ENSMUSG00000110277.2 ENSMUSG00000110277 ENSMUST00000210766 Gm45871 protein_coding Interval_22144 chr11 6598425 6598744 + 0 NA exon (ENSMUSG00000041073.10, exon 5 of 8) protein_coding-exon (ENSMUSG00000041073.10, exon 5 of 8) 1354 ENSMUSG00000041073.10 ENSMUSG00000041073 ENSMUST00000177391 Nacad protein_coding Interval_101392 chr2 180996243 180997175 + 0 NA exon (ENSMUSG00000016356.18, exon 10 of 37) protein_coding-exon (ENSMUSG00000016356.18, exon 10 of 37) 10174 ENSMUSG00000016356.18 ENSMUSG00000016356 ENSMUST00000155425 Col20a1 protein_coding Interval_42489 chr13 14055840 14056074 + 0 NA intron (ENSMUSG00000021302.10, intron 1 of 2) protein_coding-intron (ENSMUSG00000021302.10, intron 2 of 3) -1768 ENSMUSG00000021302.10 ENSMUSG00000021302 ENSMUST00000221406 Ggps1 protein_coding Interval_52087 chr14 35624740 35625053 + 0 NA Intergenic Intergenic 54943 ENSMUSG00000098696.1 ENSMUSG00000098696 ENSMUST00000184321 Gm27617 misc_RNA Interval_123458 chr5 32667947 32668986 + 0 NA intron (ENSMUSG00000014932.15, intron 11 of 11) protein_coding-intron (ENSMUSG00000014932.15, intron 11 of 11) -17401 ENSMUSG00000085234.1 ENSMUSG00000085234 ENSMUST00000155976 Gm15614 antisense Interval_24710 chr11 36045738 36046418 + 0 NA intron (ENSMUSG00000049336.16, intron 23 of 28) protein_coding-intron (ENSMUSG00000049336.16, intron 23 of 28) -34586 ENSMUSG00000087245.1 ENSMUSG00000087245 ENSMUST00000147717 Gm12126 antisense Interval_167753 chr9 72542902 72543182 + 0 NA intron (ENSMUSG00000037674.15, intron 2 of 5) protein_coding-intron (ENSMUSG00000037674.15, intron 1 of 8) -8686 ENSMUSG00000099310.1 ENSMUSG00000099310 ENSMUST00000183619 Gm19427 processed_pseudogene Interval_36320 chr12 41163387 41163839 + 0 NA intron (ENSMUSG00000056899.10, intron 3 of 5) protein_coding-intron (ENSMUSG00000056899.10, intron 4 of 6) -118674 ENSMUSG00000113994.1 ENSMUSG00000113994 ENSMUST00000220956 Gm47375 antisense Interval_58071 chr15 27618800 27619270 + 0 NA intron (ENSMUSG00000046034.8, intron 2 of 4) protein_coding-intron (ENSMUSG00000046034.8, intron 3 of 6) 11643 ENSMUSG00000046034.8 ENSMUSG00000046034 ENSMUST00000228439 Otulin protein_coding Interval_1560 chr1 26229326 26230178 + 0 NA Intergenic Intergenic -232593 ENSMUSG00000101618.1 ENSMUSG00000101618 ENSMUST00000185358 Gm18443 processed_pseudogene Interval_47866 chr13 94004446 94005418 + 0 NA Intergenic Intergenic -13164 ENSMUSG00000113791.1 ENSMUSG00000113791 ENSMUST00000221440 Gm47216 lincRNA Interval_29790 chr11 86818400 86819951 + 0 NA Intergenic Intergenic -18087 ENSMUSG00000018425.18 ENSMUSG00000018425 ENSMUST00000131798 Dhx40 protein_coding Interval_11964 chr1 187786668 187787949 + 0 NA intron (ENSMUSG00000026610.13, intron 1 of 1) protein_coding-intron (ENSMUSG00000026610.13, intron 1 of 7) 74503 ENSMUSG00000118492.1 ENSMUSG00000118492 ENSMUST00000238811 AC121143.1 processed_pseudogene Interval_140293 chr6 116202466 116202688 + 0 NA intron (ENSMUSG00000108030.1, intron 2 of 3) bidirectional_promoter_lncRNA-intron (ENSMUSG00000108030.1, intron 2 of 3) 5416 ENSMUSG00000108030.1 ENSMUSG00000108030 ENSMUST00000203332 9530062K07Rik bidirectional_promoter_lncRNA Interval_143568 chr7 12880597 12881722 + 0 NA promoter-TSS (ENSMUSG00000060397.6) protein_coding-promoter-TSS (ENSMUSG00000060397.6) -18 ENSMUSG00000060397.6 ENSMUSG00000060397 ENSMUST00000144578 Zfp128 protein_coding Interval_169271 chr9 96024270 96024534 + 0 NA intron (ENSMUSG00000032410.13, intron 31 of 39) protein_coding-intron (ENSMUSG00000032410.13, intron 31 of 41) -4222 ENSMUSG00000103507.1 ENSMUSG00000103507 ENSMUST00000194610 Gm38375 TEC Interval_26360 chr11 57247688 57248584 + 0 NA intron (ENSMUSG00000020524.16, intron 11 of 15) protein_coding-intron (ENSMUSG00000020524.16, intron 11 of 15) 71618 ENSMUSG00000020524.16 ENSMUSG00000020524 ENSMUST00000173531 Gria1 protein_coding Interval_156652 chr8 56478526 56479213 + 0 NA intron (ENSMUSG00000110310.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000110310.1, intron 1 of 2) 6099 ENSMUSG00000110310.1 ENSMUSG00000110310 ENSMUST00000209557 4930518J21Rik lincRNA Interval_50651 chr14 17473558 17473916 + 0 NA Intergenic Intergenic 297385 ENSMUSG00000114281.1 ENSMUSG00000114281 ENSMUST00000225878 Gm48320 processed_pseudogene Interval_72789 chr17 32192942 32193347 + 0 NA Intergenic Intergenic -3595 ENSMUSG00000037577.13 ENSMUSG00000037577 ENSMUST00000162117 Ephx3 protein_coding Interval_84756 chr19 16293451 16294051 + 0 NA intron (ENSMUSG00000024639.5, intron 2 of 2) protein_coding-intron (ENSMUSG00000024639.5, intron 2 of 6) 15954 ENSMUSG00000078528.2 ENSMUSG00000078528 ENSMUST00000163135 Gm17068 processed_pseudogene Interval_170102 chr9 104457622 104457840 + 0 NA Intergenic Intergenic 23779 ENSMUSG00000089116.1 ENSMUSG00000089116 ENSMUST00000158491 Gm25904 snoRNA Interval_93902 chr2 78766498 78767214 + 0 NA Intergenic Intergenic 78597 ENSMUSG00000084101.1 ENSMUSG00000084101 ENSMUST00000120765 Gm17014 processed_pseudogene Interval_143436 chr7 6784358 6785433 + 0 NA intron (ENSMUSG00000051527.11, intron 2 of 7) protein_coding-intron (ENSMUSG00000051527.11, intron 2 of 7) -18692 ENSMUSG00000092815.1 ENSMUSG00000092815 ENSMUST00000175074 Mir3099 miRNA Interval_11425 chr1 181880770 181882236 + 0 NA Intergenic Intergenic -28314 ENSMUSG00000056699.7 ENSMUSG00000056699 ENSMUST00000070987 Gm5533 lincRNA Interval_139642 chr6 104486243 104486608 + 0 NA Intergenic Intergenic -6823 ENSMUSG00000030092.14 ENSMUSG00000030092 ENSMUST00000162872 Cntn6 protein_coding Interval_157798 chr8 73315260 73315514 + 0 NA intron (ENSMUSG00000004383.18, intron 1 of 14) protein_coding-intron (ENSMUSG00000004383.18, intron 1 of 14) 38153 ENSMUSG00000004383.18 ENSMUSG00000004383 ENSMUST00000146249 Large1 protein_coding Interval_108176 chr3 122169261 122170025 + 0 NA promoter-TSS (ENSMUSG00000028125.14) protein_coding-promoter-TSS (ENSMUSG00000028125.14) -322 ENSMUSG00000028125.14 ENSMUSG00000028125 ENSMUST00000136358 Abca4 protein_coding Interval_145125 chr7 30187064 30187622 + 0 NA TTS (ENSMUSG00000001794.13) protein_coding-TTS (ENSMUSG00000001794.13) 3149 ENSMUSG00000074218.3 ENSMUSG00000074218 ENSMUST00000208441 Cox7a1 protein_coding Interval_121307 chr4 154887766 154887966 + 0 NA exon (ENSMUSG00000058183.14, exon 11 of 24) protein_coding-exon (ENSMUSG00000058183.14, exon 11 of 24) 11269 ENSMUSG00000029059.9 ENSMUSG00000029059 ENSMUST00000132281 Prxl2b protein_coding Interval_82599 chr18 75375339 75376079 + 0 NA intron (ENSMUSG00000025880.11, intron 1 of 2) protein_coding-intron (ENSMUSG00000025880.11, intron 2 of 3) 6719 ENSMUSG00000025880.11 ENSMUSG00000025880 ENSMUST00000172718 Smad7 protein_coding Interval_59351 chr15 51828189 51829022 + 0 NA intron (ENSMUSG00000022312.11, intron 2 of 2) protein_coding-intron (ENSMUSG00000022312.11, intron 2 of 7) 7652 ENSMUSG00000022312.11 ENSMUSG00000022312 ENSMUST00000228583 Eif3h protein_coding Interval_162685 chr9 7797963 7800866 + 0 NA Intergenic Intergenic 15024 ENSMUSG00000093615.1 ENSMUSG00000093615 ENSMUST00000175907 Mir5618 miRNA Interval_153712 chr8 4946269 4946567 + 0 NA Intergenic Intergenic 85249 ENSMUSG00000062152.4 ENSMUSG00000062152 ENSMUST00000080279 Rpl21-ps14 processed_pseudogene Interval_54393 chr14 68204679 68204893 + 0 NA Intergenic Intergenic -13467 ENSMUSG00000114925.1 ENSMUSG00000114925 ENSMUST00000223651 Gm47212 lincRNA Interval_157896 chr8 75299594 75300614 + 0 NA Intergenic Intergenic 5534 ENSMUSG00000110432.1 ENSMUSG00000110432 ENSMUST00000213023 Gm45907 processed_pseudogene Interval_150868 chr7 116060522 116061097 + 0 NA intron (ENSMUSG00000030663.12, intron 1 of 7) protein_coding-intron (ENSMUSG00000030663.12, intron 1 of 4) 21097 ENSMUSG00000030663.12 ENSMUSG00000030663 ENSMUST00000151254 1110004F10Rik protein_coding Interval_64741 chr16 14747209 14747432 + 0 NA Intergenic Intergenic 41468 ENSMUSG00000022676.7 ENSMUSG00000022676 ENSMUST00000023356 Snai2 protein_coding Interval_154610 chr8 22047994 22048600 + 0 NA intron (ENSMUSG00000006567.11, intron 1 of 21) protein_coding-intron (ENSMUSG00000006567.11, intron 1 of 20) 11722 ENSMUSG00000006567.11 ENSMUSG00000006567 ENSMUST00000110738 Atp7b protein_coding Interval_60890 chr15 77627701 77627938 + 0 NA Intergenic Intergenic 5985 ENSMUSG00000095704.2 ENSMUSG00000095704 ENSMUST00000178052 Gm8221 unprocessed_pseudogene Interval_68759 chr16 85676958 85677706 + 0 NA Intergenic Intergenic 33080 ENSMUSG00000116972.1 ENSMUSG00000116972 ENSMUST00000231765 Gm6278 processed_pseudogene Interval_84097 chr19 7188937 7189547 + 0 NA intron (ENSMUSG00000036278.7, intron 4 of 10) protein_coding-intron (ENSMUSG00000036278.7, intron 4 of 10) 16533 ENSMUSG00000024767.11 ENSMUSG00000024767 ENSMUST00000123743 Otub1 protein_coding Interval_21744 chr11 4076633 4076856 + 0 NA TTS (ENSMUSG00000054986.13) protein_coding-TTS (ENSMUSG00000054986.13) 11853 ENSMUSG00000054986.13 ENSMUSG00000054986 ENSMUST00000126396 Sec14l3 protein_coding Interval_111006 chr4 11162459 11162932 + 0 NA intron (ENSMUSG00000028211.11, intron 1 of 2) protein_coding-intron (ENSMUSG00000028211.11, intron 1 of 3) 6251 ENSMUSG00000028211.11 ENSMUSG00000028211 ENSMUST00000132346 Trp53inp1 protein_coding Interval_89177 chr2 17867407 17868963 + 0 NA Intergenic Intergenic -70201 ENSMUSG00000081851.1 ENSMUSG00000081851 ENSMUST00000120245 Gm13323 processed_pseudogene Interval_25292 chr11 46152794 46154030 + 0 NA intron (ENSMUSG00000020411.2, intron 4 of 5) protein_coding-intron (ENSMUSG00000020411.2, intron 4 of 5) -6296 ENSMUSG00000086998.1 ENSMUSG00000086998 ENSMUST00000144915 Gm16033 antisense Interval_110504 chr3 159890949 159891686 + 0 NA intron (ENSMUSG00000028173.10, intron 2 of 6) protein_coding-intron (ENSMUSG00000028173.10, intron 2 of 11) 15471 ENSMUSG00000105990.1 ENSMUSG00000105990 ENSMUST00000199465 Gm43307 TEC Interval_43910 chr13 37996913 37997137 + 0 NA Intergenic Intergenic -2942 ENSMUSG00000021427.10 ENSMUSG00000021427 ENSMUST00000224399 Ssr1 protein_coding Interval_34939 chr12 14195453 14195855 + 0 NA Intergenic Intergenic -44305 ENSMUSG00000020607.7 ENSMUSG00000020607 ENSMUST00000221405 Lratd1 protein_coding Interval_147447 chr7 67341994 67342890 + 0 NA intron (ENSMUSG00000030557.17, intron 2 of 11) protein_coding-intron (ENSMUSG00000030557.17, intron 2 of 10) 28538 ENSMUSG00000109363.1 ENSMUSG00000109363 ENSMUST00000207911 Gm44668 TEC Interval_158513 chr8 84186374 84187617 + 0 NA Intergenic Intergenic -1778 ENSMUSG00000056155.6 ENSMUSG00000056155 ENSMUST00000210202 Nanos3 protein_coding Interval_75077 chr17 63053244 63053445 + 0 NA Intergenic Intergenic 43656 ENSMUSG00000089586.1 ENSMUSG00000089586 ENSMUST00000158961 Gm25348 rRNA Interval_74163 chr17 46854675 46854941 + 0 NA intron (ENSMUSG00000036568.7, intron 1 of 4) protein_coding-intron (ENSMUSG00000036568.7, intron 1 of 4) -22494 ENSMUSG00000036568.7 ENSMUSG00000036568 ENSMUST00000233455 Bicral protein_coding Interval_15347 chr10 44892272 44892606 + 0 NA Intergenic Intergenic -25653 ENSMUSG00000111868.1 ENSMUSG00000111868 ENSMUST00000215415 Gm47398 lincRNA Interval_4305 chr1 72582847 72583900 + 0 NA promoter-TSS (ENSMUSG00000039354.16) protein_coding-promoter-TSS (ENSMUSG00000039354.16) 122 ENSMUSG00000039354.16 ENSMUSG00000039354 ENSMUST00000126832 Smarcal1 protein_coding Interval_80488 chr18 42644811 42645092 + 0 NA TTS (ENSMUSG00000024500.20) protein_coding-TTS (ENSMUSG00000024500.20) -22492 ENSMUSG00000117926.1 ENSMUSG00000117926 ENSMUST00000236808 C030004G16Rik lincRNA Interval_85482 chr19 27344603 27344796 + 0 NA promoter-TSS (ENSMUSG00000117752.1) processed_transcript-promoter-TSS (ENSMUSG00000117752.1) -50 ENSMUSG00000117752.1 ENSMUSG00000117752 ENSMUST00000237044 Gm35554 processed_transcript Interval_5264 chr1 87070478 87071143 + 0 NA exon (ENSMUSG00000101940.2, exon 11 of 11) transcribed_unprocessed_pseudogene-exon (ENSMUSG00000101940.2, exon 11 of 11) 3138 ENSMUSG00000101940.2 ENSMUSG00000101940 ENSMUST00000188050 Akp-ps1 transcribed_unprocessed_pseudogene Interval_153165 chr7 142002179 142002622 + 0 NA TTS (ENSMUSG00000053046.16) protein_coding-TTS (ENSMUSG00000053046.16) 959 ENSMUSG00000053046.16 ENSMUSG00000053046 ENSMUST00000210065 Brsk2 protein_coding Interval_30522 chr11 94928685 94929121 + 0 NA Intergenic Intergenic 9194 ENSMUSG00000064512.1 ENSMUSG00000064512 ENSMUST00000082578 Gm22456 snRNA Interval_85109 chr19 22922759 22923543 + 0 NA intron (ENSMUSG00000052387.16, intron 20 of 24) protein_coding-intron (ENSMUSG00000052387.16, intron 21 of 26) -138303 ENSMUSG00000118155.1 ENSMUSG00000118155 ENSMUST00000235686 Gm50136 lincRNA Interval_114689 chr4 83853854 83854055 + 0 NA intron (ENSMUSG00000052407.17, intron 25 of 25) protein_coding-intron (ENSMUSG00000052407.17, intron 25 of 25) 34904 ENSMUSG00000085378.1 ENSMUSG00000085378 ENSMUST00000128214 Gm11415 lincRNA Interval_155300 chr8 31075474 31075815 + 0 NA Intergenic Intergenic -13994 ENSMUSG00000039661.14 ENSMUSG00000039661 ENSMUST00000160700 Dusp26 protein_coding Interval_66825 chr16 37928634 37930242 + 0 NA intron (ENSMUSG00000046961.8, intron 1 of 9) protein_coding-intron (ENSMUSG00000046961.8, intron 1 of 9) 12942 ENSMUSG00000046961.8 ENSMUSG00000046961 ENSMUST00000061274 Gpr156 protein_coding Interval_134723 chr6 30924896 30925371 + 0 NA intron (ENSMUSG00000085321.1, intron 2 of 2) lincRNA-intron (ENSMUSG00000085321.1, intron 2 of 2) -21674 ENSMUSG00000039032.2 ENSMUSG00000039032 ENSMUST00000201230 Tsga13 protein_coding Interval_171617 chr9 119578354 119579454 + 0 NA exon (ENSMUSG00000032511.17, exon 1 of 28) protein_coding-exon (ENSMUSG00000032511.17, exon 1 of 28) -15401 ENSMUSG00000032511.17 ENSMUSG00000032511 ENSMUST00000138934 Scn5a protein_coding Interval_6507 chr1 113394147 113394948 + 0 NA Intergenic Intergenic 105207 ENSMUSG00000101453.1 ENSMUSG00000101453 ENSMUST00000190085 Gm28189 lincRNA Interval_111883 chr4 32238142 32241769 + 0 NA intron (ENSMUSG00000040270.16, intron 1 of 3) protein_coding-intron (ENSMUSG00000040270.16, intron 1 of 7) -11806 ENSMUSG00000087049.1 ENSMUSG00000087049 ENSMUST00000133451 Bach2it1 sense_intronic Interval_18194 chr10 83601290 83601742 + 0 NA TTS (ENSMUSG00000020263.14) protein_coding-TTS (ENSMUSG00000020263.14) 1614 ENSMUSG00000020263.14 ENSMUSG00000020263 ENSMUST00000176294 Appl2 protein_coding Interval_129668 chr5 121631048 121631959 + 0 NA exon (ENSMUSG00000029456.12, exon 13 of 21) protein_coding-exon (ENSMUSG00000029456.12, exon 13 of 21) 1276 ENSMUSG00000029456.12 ENSMUSG00000029456 ENSMUST00000137231 Acad10 protein_coding Interval_91694 chr2 48109178 48109563 + 0 NA intron (ENSMUSG00000086353.1, intron 3 of 5) lincRNA-intron (ENSMUSG00000086353.1, intron 3 of 5) -30776 ENSMUSG00000082278.1 ENSMUSG00000082278 ENSMUST00000122057 Gm13471 processed_pseudogene Interval_58674 chr15 36948977 36949953 + 0 NA exon (ENSMUSG00000115333.1, exon 3 of 3) lincRNA-exon (ENSMUSG00000115333.1, exon 3 of 3) 10601 ENSMUSG00000115333.1 ENSMUSG00000115333 ENSMUST00000227227 Gm34590 lincRNA Interval_125950 chr5 76163150 76164248 + 0 NA Intergenic Intergenic 22999 ENSMUSG00000029233.15 ENSMUSG00000029233 ENSMUST00000124217 Srd5a3 protein_coding Interval_15589 chr10 51998843 51999049 + 0 NA Intergenic Intergenic -9367 ENSMUSG00000112557.1 ENSMUSG00000112557 ENSMUST00000219916 Gm47626 processed_pseudogene Interval_29765 chr11 86653569 86654246 + 0 NA intron (ENSMUSG00000018171.9, intron 2 of 2) protein_coding-intron (ENSMUSG00000018171.9, intron 5 of 11) -22881 ENSMUSG00000083992.1 ENSMUSG00000083992 ENSMUST00000117851 Gm11478 processed_pseudogene Interval_26346 chr11 56916917 56917113 + 0 NA Intergenic Intergenic -259503 ENSMUSG00000020524.16 ENSMUSG00000020524 ENSMUST00000173531 Gria1 protein_coding Interval_103002 chr3 34149967 34150567 + 0 NA intron (ENSMUSG00000105265.4, intron 1 of 3) processed_transcript-intron (ENSMUSG00000105265.4, intron 1 of 3) -33040 ENSMUSG00000105739.1 ENSMUSG00000105739 ENSMUST00000196289 Gm5708 processed_pseudogene Interval_155147 chr8 27057682 27058707 + 0 NA Intergenic Intergenic 7420 ENSMUSG00000031485.15 ENSMUSG00000031485 ENSMUST00000211756 Plpbp protein_coding Interval_18674 chr10 89147715 89148135 + 0 NA intron (ENSMUSG00000035189.17, intron 2 of 7) protein_coding-intron (ENSMUSG00000035189.17, intron 2 of 7) 109665 ENSMUSG00000035189.17 ENSMUSG00000035189 ENSMUST00000180843 Ano4 protein_coding Interval_51392 chr14 27189584 27190069 + 0 NA intron (ENSMUSG00000021895.10, intron 3 of 13) protein_coding-intron (ENSMUSG00000021895.10, intron 3 of 13) -20571 ENSMUSG00000114349.1 ENSMUSG00000114349 ENSMUST00000225776 Gm7591 processed_pseudogene Interval_70905 chr17 15769376 15769691 + 0 NA intron (ENSMUSG00000023852.14, intron 35 of 35) protein_coding-intron (ENSMUSG00000023852.14, intron 35 of 35) 30998 ENSMUSG00000023852.14 ENSMUSG00000023852 ENSMUST00000173040 Chd1 protein_coding Interval_120505 chr4 149048974 149050380 + 0 NA intron (ENSMUSG00000028975.16, intron 2 of 3) protein_coding-intron (ENSMUSG00000028975.16, intron 2 of 8) -46706 ENSMUSG00000081086.1 ENSMUSG00000081086 ENSMUST00000118516 Gm9506 processed_pseudogene Interval_2025 chr1 35971310 35971601 + 0 NA Intergenic Intergenic 12536 ENSMUSG00000103096.1 ENSMUSG00000103096 ENSMUST00000191763 Gm8022 processed_pseudogene Interval_15224 chr10 43477389 43480133 + 0 NA promoter-TSS (ENSMUSG00000038214.15) protein_coding-promoter-TSS (ENSMUSG00000038214.15) -6473 ENSMUSG00000038214.15 ENSMUSG00000038214 ENSMUST00000214116 Bend3 protein_coding Interval_103011 chr3 34443112 34443311 + 0 NA intron (ENSMUSG00000105265.4, intron 2 of 2) processed_transcript-intron (ENSMUSG00000105265.4, intron 2 of 4) -8114 ENSMUSG00000092242.1 ENSMUSG00000092242 ENSMUST00000174440 Gm20515 lincRNA Interval_126001 chr5 76762127 76763382 + 0 NA intron (ENSMUSG00000036377.19, intron 2 of 3) protein_coding-intron (ENSMUSG00000036377.19, intron 2 of 10) -20241 ENSMUSG00000083874.1 ENSMUSG00000083874 ENSMUST00000121248 Gm7494 processed_pseudogene Interval_162409 chr8 128207390 128207681 + 0 NA Intergenic Intergenic 70690 ENSMUSG00000099326.1 ENSMUSG00000099326 ENSMUST00000184910 Mir21c miRNA Interval_147474 chr7 67592911 67593663 + 0 NA promoter-TSS (ENSMUSG00000109342.1) processed_pseudogene-promoter-TSS (ENSMUSG00000109342.1) -372 ENSMUSG00000109342.1 ENSMUSG00000109342 ENSMUST00000208500 Gm32983 processed_pseudogene Interval_45278 chr13 53875556 53876082 + 0 NA Intergenic Intergenic -12808 ENSMUSG00000114012.1 ENSMUSG00000114012 ENSMUST00000221478 Gm18974 processed_pseudogene Interval_32907 chr11 113010291 113011035 + 0 NA Intergenic Intergenic 162414 ENSMUSG00000087259.7 ENSMUSG00000087259 ENSMUST00000150712 2610035D17Rik lincRNA Interval_18578 chr10 88146185 88147610 + 0 NA promoter-TSS (ENSMUSG00000035365.15) protein_coding-promoter-TSS (ENSMUSG00000035365.15) 36 ENSMUSG00000035365.15 ENSMUSG00000035365 ENSMUST00000164803 Parpbp protein_coding Interval_47623 chr13 90245819 90246683 + 0 NA Intergenic Intergenic 8079 ENSMUSG00000102756.1 ENSMUSG00000102756 ENSMUST00000193481 Gm37054 TEC Interval_143826 chr7 16535539 16535789 + 0 NA intron (ENSMUSG00000058230.12, intron 4 of 7) protein_coding-intron (ENSMUSG00000058230.12, intron 3 of 6) -20526 ENSMUSG00000101135.1 ENSMUSG00000101135 ENSMUST00000191109 Gm17981 processed_pseudogene Interval_15844 chr10 58354168 58355144 + 0 NA intron (ENSMUSG00000019920.18, intron 1 of 9) protein_coding-intron (ENSMUSG00000019920.18, intron 1 of 9) -5052 ENSMUSG00000070214.1 ENSMUSG00000070214 ENSMUST00000093703 Gm23058 snRNA Interval_130393 chr5 127271117 127271594 + 0 NA intron (ENSMUSG00000087104.7, intron 1 of 3) protein_coding-intron (ENSMUSG00000034324.16, intron 1 of 8) 10239 ENSMUSG00000087104.7 ENSMUSG00000087104 ENSMUST00000154361 Tmem132cos antisense Interval_143030 chr6 148712635 148713143 + 0 NA TTS (ENSMUSG00000107405.1) lincRNA-TTS (ENSMUSG00000107405.1) 10891 ENSMUSG00000107405.1 ENSMUSG00000107405 ENSMUST00000203917 Gm44115 lincRNA Interval_114749 chr4 84726753 84727015 + 0 NA Intergenic Intergenic -14591 ENSMUSG00000086413.1 ENSMUSG00000086413 ENSMUST00000141637 Gm12415 lincRNA Interval_136103 chr6 50967980 50968225 + 0 NA TTS (ENSMUSG00000108153.1) processed_pseudogene-TTS (ENSMUSG00000108153.1) 834 ENSMUSG00000108153.1 ENSMUSG00000108153 ENSMUST00000203677 Gm44402 processed_pseudogene Interval_157079 chr8 65016743 65017120 + 0 NA intron (ENSMUSG00000109805.1, intron 2 of 2) protein_coding-intron (ENSMUSG00000053490.8, intron 1 of 1) 1339 ENSMUSG00000109650.1 ENSMUSG00000109650 ENSMUST00000211739 Gm45448 processed_pseudogene Interval_44353 chr13 44056159 44056603 + 0 NA Intergenic Intergenic -37859 ENSMUSG00000113252.1 ENSMUSG00000113252 ENSMUST00000223171 Gm33489 lincRNA Interval_150734 chr7 113920341 113920542 + 0 NA intron (ENSMUSG00000038156.16, intron 5 of 5) protein_coding-intron (ENSMUSG00000038156.16, intron 5 of 15) 154267 ENSMUSG00000038156.16 ENSMUSG00000038156 ENSMUST00000084696 Spon1 protein_coding Interval_82158 chr18 68156526 68157959 + 0 NA intron (ENSMUSG00000024544.9, intron 3 of 5) protein_coding-intron (ENSMUSG00000024544.9, intron 3 of 5) 11725 ENSMUSG00000118306.1 ENSMUSG00000118306 ENSMUST00000237336 Gm18149 processed_pseudogene Interval_146771 chr7 50443757 50444118 + 0 NA intron (ENSMUSG00000055409.14, intron 8 of 9) protein_coding-intron (ENSMUSG00000055409.14, intron 12 of 19) 132034 ENSMUSG00000085265.1 ENSMUSG00000085265 ENSMUST00000136672 Nell1os antisense Interval_74544 chr17 53201208 53201774 + 0 NA Intergenic Intergenic 5040 ENSMUSG00000117244.1 ENSMUSG00000117244 ENSMUST00000233156 Gm9210 processed_pseudogene Interval_108051 chr3 121115653 121115841 + 0 NA Intergenic Intergenic -52909 ENSMUSG00000106329.1 ENSMUSG00000106329 ENSMUST00000199790 Gm10652 TEC Interval_98830 chr2 155381486 155382473 + 0 NA promoter-TSS (ENSMUSG00000038375.15) protein_coding-promoter-TSS (ENSMUSG00000038375.15) 139 ENSMUSG00000038375.15 ENSMUSG00000038375 ENSMUST00000134218 Trp53inp2 protein_coding Interval_68657 chr16 83855448 83855636 + 0 NA Intergenic Intergenic 201842 ENSMUSG00000116745.1 ENSMUSG00000116745 ENSMUST00000231610 Gm41481 lincRNA Interval_114343 chr4 73860984 73861433 + 0 NA Intergenic Intergenic -3189 ENSMUSG00000083530.1 ENSMUSG00000083530 ENSMUST00000120844 Gm13867 unprocessed_pseudogene Interval_34852 chr12 12715350 12716257 + 0 NA Intergenic Intergenic -7058 ENSMUSG00000113009.1 ENSMUSG00000113009 ENSMUST00000222770 3732407C23Rik TEC Interval_40983 chr12 110425456 110426812 + 0 NA Intergenic Intergenic -21173 ENSMUSG00000017843.14 ENSMUSG00000017843 ENSMUST00000221074 Ppp2r5c protein_coding Interval_106030 chr3 90969319 90971034 + 0 NA Intergenic Intergenic 47008 ENSMUSG00000106257.1 ENSMUSG00000106257 ENSMUST00000198408 Gm9023 unprocessed_pseudogene Interval_144309 chr7 24416808 24417009 + 0 NA intron (ENSMUSG00000002210.11, intron 2 of 5) protein_coding-intron (ENSMUSG00000002210.11, intron 8 of 13) 2175 ENSMUSG00000002210.11 ENSMUSG00000002210 ENSMUST00000146686 Smg9 protein_coding Interval_122189 chr5 19258216 19258518 + 0 NA intron (ENSMUSG00000040003.18, intron 1 of 2) protein_coding-intron (ENSMUSG00000040003.18, intron 1 of 22) -32199 ENSMUSG00000097626.5 ENSMUSG00000097626 ENSMUST00000197496 4921504A21Rik antisense Interval_87177 chr19 46632377 46633608 + 0 NA intron (ENSMUSG00000047731.17, intron 2 of 3) protein_coding-intron (ENSMUSG00000047731.17, intron 2 of 4) 33134 ENSMUSG00000118040.1 ENSMUSG00000118040 ENSMUST00000238131 Gm36602 lincRNA Interval_52950 chr14 52222215 52222796 + 0 NA TTS (ENSMUSG00000053754.14) protein_coding-TTS (ENSMUSG00000053754.14) -12611 ENSMUSG00000093044.1 ENSMUSG00000093044 ENSMUST00000175303 Snord8 snoRNA Interval_132864 chr5 148386526 148386766 + 0 NA intron (ENSMUSG00000041313.14, intron 1 of 5) protein_coding-intron (ENSMUSG00000041313.14, intron 1 of 12) 13145 ENSMUSG00000041313.14 ENSMUSG00000041313 ENSMUST00000201348 Slc7a1 protein_coding Interval_136245 chr6 52252209 52254234 + 0 NA Intergenic Intergenic 3922 ENSMUSG00000099248.1 ENSMUSG00000099248 ENSMUST00000183562 Gm27543 misc_RNA Interval_107127 chr3 103753043 103753543 + 0 NA TTS (ENSMUSG00000008730.17) protein_coding-TTS (ENSMUSG00000008730.17) -2228 ENSMUSG00000008730.17 ENSMUSG00000008730 ENSMUST00000135634 Hipk1 protein_coding Interval_123842 chr5 35892689 35894129 + 0 NA promoter-TSS (ENSMUSG00000029094.12) protein_coding-promoter-TSS (ENSMUSG00000029094.12) -24488 ENSMUSG00000082692.2 ENSMUSG00000082692 ENSMUST00000119066 H2af-ps processed_pseudogene Interval_111663 chr4 25459156 25459390 + 0 NA Intergenic Intergenic 39924 ENSMUSG00000082451.1 ENSMUSG00000082451 ENSMUST00000121579 Gm11894 processed_pseudogene Interval_5123 chr1 85822126 85822431 + 0 NA intron (ENSMUSG00000036707.16, intron 2 of 3) protein_coding-intron (ENSMUSG00000036707.16, intron 3 of 9) -20802 ENSMUSG00000036707.16 ENSMUSG00000036707 ENSMUST00000187623 Cab39 protein_coding Interval_19119 chr10 94799251 94799952 + 0 NA intron (ENSMUSG00000074785.5, intron 24 of 30) protein_coding-intron (ENSMUSG00000074785.5, intron 24 of 30) -12440 ENSMUSG00000112669.1 ENSMUSG00000112669 ENSMUST00000218201 Gm48689 antisense Interval_117510 chr4 124284952 124285689 + 0 NA Intergenic Intergenic -6143 ENSMUSG00000103541.1 ENSMUSG00000103541 ENSMUST00000193103 Gm37667 TEC Interval_60772 chr15 76659648 76661390 + 0 NA promoter-TSS (ENSMUSG00000004187.11) protein_coding-promoter-TSS (ENSMUSG00000004187.11) -117 ENSMUSG00000004187.11 ENSMUSG00000004187 ENSMUST00000229513 Kifc2 protein_coding Interval_131173 chr5 135607342 135608255 + 0 NA Intergenic Intergenic 9501 ENSMUSG00000107029.1 ENSMUSG00000107029 ENSMUST00000201893 Gm43123 TEC Interval_74125 chr17 46650197 46651226 + 0 NA promoter-TSS (ENSMUSG00000038545.13) protein_coding-promoter-TSS (ENSMUSG00000038545.13) 148 ENSMUSG00000038545.13 ENSMUSG00000038545 ENSMUST00000125949 Cul7 protein_coding Interval_95652 chr2 113525492 113525865 + 0 NA exon (ENSMUSG00000044042.19, exon 4 of 17) protein_coding-exon (ENSMUSG00000044042.19, exon 4 of 17) -21644 ENSMUSG00000087106.1 ENSMUSG00000087106 ENSMUST00000133815 Gm13964 antisense Interval_139725 chr6 108146062 108146421 + 0 NA intron (ENSMUSG00000030101.15, intron 2 of 4) protein_coding-intron (ENSMUSG00000030101.15, intron 6 of 8) -5732 ENSMUSG00000091845.1 ENSMUSG00000091845 ENSMUST00000025040 Rpl36-ps12 processed_pseudogene Interval_165843 chr9 53754791 53757348 + 0 NA Intergenic Intergenic 10000 ENSMUSG00000111084.1 ENSMUSG00000111084 ENSMUST00000213450 Gm48292 processed_pseudogene Interval_66548 chr16 35024358 35024557 + 0 NA intron (ENSMUSG00000035376.10, intron 1 of 2) protein_coding-intron (ENSMUSG00000035376.10, intron 1 of 6) -1557 ENSMUSG00000116840.1 ENSMUSG00000116840 ENSMUST00000232358 Gm21691 antisense Interval_129599 chr5 121219869 121221194 + 0 NA exon (ENSMUSG00000042744.16, exon 1 of 76) protein_coding-exon (ENSMUSG00000042744.16, exon 1 of 76) 13807 ENSMUSG00000029614.13 ENSMUSG00000029614 ENSMUST00000138621 Rpl6 protein_coding Interval_83927 chr19 5648413 5649475 + 0 NA TTS (ENSMUSG00000024927.8) protein_coding-TTS (ENSMUSG00000024927.8) 5893 ENSMUSG00000056917.13 ENSMUSG00000056917 ENSMUST00000236827 Sipa1 protein_coding Interval_161033 chr8 117058934 117059670 + 0 NA intron (ENSMUSG00000034416.18, intron 11 of 42) protein_coding-intron (ENSMUSG00000034416.18, intron 11 of 42) 22805 ENSMUSG00000085688.1 ENSMUSG00000085688 ENSMUST00000153724 Gm15395 antisense Interval_68945 chr16 89608445 89609004 + 0 NA Intergenic Intergenic 24189 ENSMUSG00000116870.1 ENSMUSG00000116870 ENSMUST00000231309 Gm49696 lincRNA Interval_46626 chr13 67728321 67729804 + 0 NA promoter-TSS (ENSMUSG00000044081.7) processed_transcript-promoter-TSS (ENSMUSG00000044081.7) -3624 ENSMUSG00000114887.1 ENSMUSG00000114887 ENSMUST00000225752 Gm48894 processed_pseudogene Interval_147168 chr7 64015341 64015536 + 0 NA intron (ENSMUSG00000108393.1, intron 2 of 3) lincRNA-intron (ENSMUSG00000108393.1, intron 3 of 4) 7669 ENSMUSG00000108393.1 ENSMUSG00000108393 ENSMUST00000206557 Gm32633 lincRNA Interval_59455 chr15 53264719 53265404 + 0 NA intron (ENSMUSG00000061731.9, intron 1 of 10) protein_coding-intron (ENSMUSG00000061731.9, intron 1 of 10) -118858 ENSMUSG00000087805.2 ENSMUSG00000087805 ENSMUST00000157180 Gm27926 snRNA Interval_143186 chr7 4319994 4320856 + 0 NA Intergenic Intergenic -17344 ENSMUSG00000062524.4 ENSMUSG00000062524 ENSMUST00000126417 Ncr1 protein_coding Interval_103308 chr3 38443706 38443993 + 0 NA promoter-TSS (ENSMUSG00000105516.4) lincRNA-promoter-TSS (ENSMUSG00000105516.4) -217 ENSMUSG00000105516.4 ENSMUSG00000105516 ENSMUST00000196546 Gm36823 lincRNA Interval_7515 chr1 131940777 131941820 + 0 NA Intergenic Intergenic -8328 ENSMUSG00000103975.1 ENSMUSG00000103975 ENSMUST00000195496 Gm37676 TEC Interval_57518 chr15 12024781 12025095 + 0 NA Intergenic Intergenic 6989 ENSMUSG00000107344.1 ENSMUSG00000107344 ENSMUST00000201323 Gm2559 processed_pseudogene Interval_109867 chr3 149173344 149173780 + 0 NA Intergenic Intergenic -36709 ENSMUSG00000105357.1 ENSMUSG00000105357 ENSMUST00000195939 Gm42647 processed_pseudogene Interval_158446 chr8 83772668 83773485 + 0 NA Intergenic Intergenic 20158 ENSMUSG00000084682.1 ENSMUSG00000084682 ENSMUST00000122733 Gm22024 misc_RNA Interval_31909 chr11 103770930 103772439 + 0 NA Intergenic Intergenic -2466 ENSMUSG00000000125.5 ENSMUSG00000000125 ENSMUST00000000127 Wnt3 protein_coding Interval_81851 chr18 65288973 65289329 + 0 NA intron (ENSMUSG00000032845.16, intron 7 of 9) protein_coding-intron (ENSMUSG00000032845.16, intron 10 of 12) 15305 ENSMUSG00000032845.16 ENSMUSG00000032845 ENSMUST00000182629 Alpk2 protein_coding Interval_87702 chr19 55218129 55219241 + 0 NA intron (ENSMUSG00000055523.7, intron 12 of 20) protein_coding-intron (ENSMUSG00000055523.7, intron 12 of 20) 22551 ENSMUSG00000055523.7 ENSMUSG00000055523 ENSMUST00000069183 Gucy2g protein_coding Interval_170720 chr9 110322662 110323846 + 0 NA Intergenic Intergenic 7310 ENSMUSG00000106123.1 ENSMUSG00000106123 ENSMUST00000196065 Gm42638 TEC Interval_92480 chr2 60037056 60037536 + 0 NA exon (ENSMUSG00000085975.1, exon 1 of 2) lincRNA-exon (ENSMUSG00000085975.1, exon 1 of 2) 155 ENSMUSG00000085975.1 ENSMUSG00000085975 ENSMUST00000153675 Gm13572 lincRNA Interval_88734 chr2 10075767 10075990 + 0 NA promoter-TSS (ENSMUSG00000077733.1) snoRNA-promoter-TSS (ENSMUSG00000077733.1) -98 ENSMUSG00000077733.1 ENSMUSG00000077733 ENSMUST00000104545 Gm23608 snoRNA Interval_22606 chr11 12241528 12242217 + 0 NA intron (ENSMUSG00000020173.17, intron 7 of 7) protein_coding-intron (ENSMUSG00000020173.17, intron 14 of 14) -80403 ENSMUSG00000086584.8 ENSMUSG00000086584 ENSMUST00000174550 Gm12002 antisense Interval_279 KZ289068.1 495991 498936 + 0 NA NA NA NA NA Interval_146717 chr7 49669728 49670280 + 0 NA Intergenic Intergenic -33155 ENSMUSG00000030507.6 ENSMUSG00000030507 ENSMUST00000032717 Dbx1 protein_coding Interval_146831 chr7 52737559 52738707 + 0 NA Intergenic Intergenic -17332 ENSMUSG00000074092.5 ENSMUSG00000074092 ENSMUST00000117187 Gm6181 processed_pseudogene Interval_16048 chr10 60299612 60300446 + 0 NA exon (ENSMUSG00000004207.14, exon 10 of 14) protein_coding-exon (ENSMUSG00000004207.14, exon 10 of 14) 5620 ENSMUSG00000012819.15 ENSMUSG00000012819 ENSMUST00000123309 Cdh23 protein_coding Interval_96358 chr2 121962394 121964211 + 0 NA intron (ENSMUSG00000033411.16, intron 1 of 12) protein_coding-intron (ENSMUSG00000033411.16, intron 1 of 12) 6822 ENSMUSG00000033411.16 ENSMUSG00000033411 ENSMUST00000127265 Ctdspl2 protein_coding Interval_130898 chr5 133743689 133744827 + 0 NA Intergenic Intergenic 98261 ENSMUSG00000106067.1 ENSMUSG00000106067 ENSMUST00000198842 Gm7902 processed_pseudogene Interval_162580 chr9 5027574 5027928 + 0 NA Intergenic Intergenic 49792 ENSMUSG00000110644.1 ENSMUSG00000110644 ENSMUST00000212452 Gm7390 processed_pseudogene Interval_113131 chr4 48546092 48546845 + 0 NA intron (ENSMUSG00000039693.11, intron 1 of 2) protein_coding-intron (ENSMUSG00000039693.11, intron 1 of 2) 5922 ENSMUSG00000039693.11 ENSMUSG00000039693 ENSMUST00000132360 Msantd3 protein_coding Interval_126042 chr5 77047398 77047644 + 0 NA TTS (ENSMUSG00000029248.14) protein_coding-TTS (ENSMUSG00000029248.14) 10467 ENSMUSG00000029248.14 ENSMUSG00000029248 ENSMUST00000118941 Thegl protein_coding Interval_1020 chr1 14155870 14156874 + 0 NA Intergenic Intergenic -26206 ENSMUSG00000095853.1 ENSMUSG00000095853 ENSMUST00000179783 Gm22616 miRNA Interval_137150 chr6 68361464 68363001 + 0 NA Intergenic Intergenic 13585 ENSMUSG00000106066.1 ENSMUSG00000106066 ENSMUST00000196931 Igkv2-105 IG_V_pseudogene Interval_9857 chr1 163290799 163291094 + 0 NA intron (ENSMUSG00000026586.16, intron 1 of 1) protein_coding-intron (ENSMUSG00000026586.16, intron 1 of 3) -1722 ENSMUSG00000026586.16 ENSMUSG00000026586 ENSMUST00000174098 Prrx1 protein_coding Interval_168738 chr9 86565305 86566070 + 0 NA exon (ENSMUSG00000056131.13, exon 5 of 13) protein_coding-exon (ENSMUSG00000056131.13, exon 5 of 13) -6304 ENSMUSG00000032417.10 ENSMUSG00000032417 ENSMUST00000179212 Rwdd2a protein_coding Interval_2061 chr1 36198895 36199170 + 0 NA intron (ENSMUSG00000037470.14, intron 2 of 6) protein_coding-intron (ENSMUSG00000037470.14, intron 11 of 40) 45688 ENSMUSG00000037470.14 ENSMUSG00000037470 ENSMUST00000192159 Uggt1 protein_coding Interval_159562 chr8 95476279 95476539 + 0 NA intron (ENSMUSG00000046707.9, intron 2 of 8) protein_coding-intron (ENSMUSG00000046707.9, intron 3 of 11) 7214 ENSMUSG00000110635.1 ENSMUSG00000110635 ENSMUST00000212310 Gm45853 TEC Interval_10283 chr1 167937683 167938816 + 0 NA Intergenic Intergenic -65890 ENSMUSG00000093538.2 ENSMUSG00000093538 ENSMUST00000177351 Gm20711 antisense Interval_26040 chr11 53636095 53637959 + 0 NA Intergenic Intergenic -2325 ENSMUSG00000020383.1 ENSMUSG00000020383 ENSMUST00000020650 Il13 protein_coding Interval_10902 chr1 176803764 176804712 + 0 NA intron (ENSMUSG00000057335.11, intron 1 of 19) protein_coding-intron (ENSMUSG00000057335.11, intron 1 of 19) 9829 ENSMUSG00000057335.11 ENSMUSG00000057335 ENSMUST00000194263 Cep170 protein_coding Interval_68789 chr16 86628576 86628774 + 0 NA Intergenic Intergenic -130224 ENSMUSG00000116906.1 ENSMUSG00000116906 ENSMUST00000232053 Gm49572 processed_pseudogene Interval_19513 chr10 101222989 101223260 + 0 NA Intergenic Intergenic -48497 ENSMUSG00000111906.1 ENSMUSG00000111906 ENSMUST00000219772 Gm19233 processed_pseudogene Interval_41107 chr12 111233949 111236456 + 0 NA intron (ENSMUSG00000021277.16, intron 3 of 4) protein_coding-intron (ENSMUSG00000021277.16, intron 2 of 11) -13281 ENSMUSG00000021277.16 ENSMUSG00000021277 ENSMUST00000143395 Traf3 protein_coding Interval_94671 chr2 93191012 93191340 + 0 NA intron (ENSMUSG00000068735.14, intron 2 of 6) protein_coding-intron (ENSMUSG00000068735.14, intron 1 of 7) 3628 ENSMUSG00000068735.14 ENSMUSG00000068735 ENSMUST00000143164 Trp53i11 protein_coding Interval_18314 chr10 84835597 84836551 + 0 NA intron (ENSMUSG00000020037.15, intron 2 of 14) protein_coding-intron (ENSMUSG00000020037.15, intron 5 of 17) -24891 ENSMUSG00000089451.1 ENSMUSG00000089451 ENSMUST00000158826 Gm24226 snRNA Interval_32723 chr11 110032875 110033527 + 0 NA intron (ENSMUSG00000041828.15, intron 31 of 38) protein_coding-intron (ENSMUSG00000041828.15, intron 31 of 38) 32172 ENSMUSG00000041828.15 ENSMUSG00000041828 ENSMUST00000106662 Abca8a protein_coding Interval_73414 chr17 37067317 37067854 + 0 NA intron (ENSMUSG00000024462.17, intron 10 of 17) protein_coding-intron (ENSMUSG00000024462.17, intron 15 of 22) 11873 ENSMUSG00000024462.17 ENSMUSG00000024462 ENSMUST00000174071 Gabbr1 protein_coding Interval_26600 chr11 59129223 59129862 + 0 NA intron (ENSMUSG00000061462.18, intron 7 of 103) protein_coding-intron (ENSMUSG00000061462.18, intron 8 of 89) 6833 ENSMUSG00000061462.18 ENSMUSG00000061462 ENSMUST00000133040 Obscn protein_coding Interval_173785 chrX 104129890 104130243 + 0 NA intron (ENSMUSG00000046449.15, intron 1 of 4) protein_coding-intron (ENSMUSG00000046449.15, intron 1 of 3) -13792 ENSMUSG00000076286.1 ENSMUSG00000076286 ENSMUST00000102331 Mir672 miRNA Interval_161120 chr8 117605412 117605699 + 0 NA intron (ENSMUSG00000034330.10, intron 24 of 32) protein_coding-intron (ENSMUSG00000034330.10, intron 24 of 32) -58529 ENSMUSG00000092818.2 ENSMUSG00000092818 ENSMUST00000175077 Gm27361 miRNA Interval_85160 chr19 23219614 23220954 + 0 NA intron (ENSMUSG00000024943.9, intron 17 of 23) protein_coding-intron (ENSMUSG00000024943.9, intron 17 of 24) 52315 ENSMUSG00000024943.9 ENSMUSG00000024943 ENSMUST00000224723 Smc5 protein_coding Interval_51248 chr14 25521677 25522801 + 0 NA intron (ENSMUSG00000007817.15, intron 2 of 23) protein_coding-intron (ENSMUSG00000007817.15, intron 2 of 23) -12200 ENSMUSG00000093081.1 ENSMUSG00000093081 ENSMUST00000175340 Mir3075 miRNA Interval_82650 chr18 75625046 75625814 + 0 NA intron (ENSMUSG00000052928.9, intron 1 of 1) protein_coding-intron (ENSMUSG00000052928.9, intron 2 of 11) 11843 ENSMUSG00000052928.9 ENSMUSG00000052928 ENSMUST00000235147 Ctif protein_coding Interval_85477 chr19 27161461 27161733 + 0 NA intron (ENSMUSG00000118020.1, intron 4 of 4) lincRNA-intron (ENSMUSG00000118020.1, intron 4 of 4) 30412 ENSMUSG00000118020.1 ENSMUSG00000118020 ENSMUST00000235406 Gm35438 lincRNA Interval_61578 chr15 82582799 82583161 + 0 NA Intergenic Intergenic -17669 ENSMUSG00000116319.1 ENSMUSG00000116319 ENSMUST00000229062 Gm49429 TEC Interval_173948 chrX 114955071 114955739 + 0 NA Intergenic Intergenic 6492 ENSMUSG00000082440.1 ENSMUSG00000082440 ENSMUST00000119757 Gm4914 processed_pseudogene Interval_143024 chr6 148589183 148590055 + 0 NA Intergenic Intergenic 24690 ENSMUSG00000070995.10 ENSMUSG00000070995 ENSMUST00000150112 Gm6313 lincRNA Interval_42041 chr13 6735412 6736067 + 0 NA Intergenic Intergenic 62600 ENSMUSG00000113545.1 ENSMUSG00000113545 ENSMUST00000223351 Gm48238 processed_pseudogene Interval_119522 chr4 138119432 138120437 + 0 NA intron (ENSMUSG00000028760.16, intron 10 of 12) protein_coding-intron (ENSMUSG00000028760.16, intron 10 of 34) 18584 ENSMUSG00000084804.1 ENSMUSG00000084804 ENSMUST00000124620 1700095J12Rik antisense Interval_89082 chr2 15925067 15926669 + 0 NA intron (ENSMUSG00000075520.5, intron 26 of 38) protein_coding-intron (ENSMUSG00000075520.5, intron 26 of 38) -31057 ENSMUSG00000081245.2 ENSMUSG00000081245 ENSMUST00000120219 Gm6587 processed_pseudogene Interval_149753 chr7 101254699 101255212 + 0 NA intron (ENSMUSG00000030691.15, intron 12 of 19) protein_coding-intron (ENSMUSG00000030691.15, intron 13 of 20) -4714 ENSMUSG00000030691.15 ENSMUSG00000030691 ENSMUST00000208917 Fchsd2 protein_coding Interval_52244 chr14 40978932 40979933 + 0 NA Intergenic Intergenic 25101 ENSMUSG00000021792.15 ENSMUSG00000021792 ENSMUST00000152837 Prxl2a protein_coding Interval_17650 chr10 78481490 78482925 + 0 NA Intergenic Intergenic -1388 ENSMUSG00000112842.2 ENSMUSG00000112842 ENSMUST00000219248 Gm30232 transcribed_unprocessed_pseudogene Interval_129806 chr5 122457188 122457739 + 0 NA intron (ENSMUSG00000029467.15, intron 19 of 20) protein_coding-intron (ENSMUSG00000029467.15, intron 19 of 19) 17324 ENSMUSG00000029466.11 ENSMUSG00000029466 ENSMUST00000154074 Anapc7 protein_coding Interval_110913 chr4 10090648 10091342 + 0 NA Intergenic Intergenic 131641 ENSMUSG00000082501.1 ENSMUSG00000082501 ENSMUST00000120635 Gm11835 processed_pseudogene Interval_157287 chr8 69018929 69019343 + 0 NA Intergenic Intergenic -17453 ENSMUSG00000110594.1 ENSMUSG00000110594 ENSMUST00000212717 Gm33103 lincRNA Interval_112089 chr4 34581710 34583494 + 0 NA intron (ENSMUSG00000040044.11, intron 12 of 13) protein_coding-intron (ENSMUSG00000040044.11, intron 13 of 19) 31651 ENSMUSG00000028291.7 ENSMUSG00000028291 ENSMUST00000132230 Akirin2 protein_coding Interval_27901 chr11 70720927 70721311 + 0 NA intron (ENSMUSG00000020821.17, intron 18 of 22) protein_coding-intron (ENSMUSG00000020821.17, intron 17 of 21) 15129 ENSMUSG00000105932.1 ENSMUSG00000105932 ENSMUST00000197857 Mir6925 miRNA Interval_91696 chr2 48316229 48316846 + 0 NA intron (ENSMUSG00000086353.1, intron 1 of 5) lincRNA-intron (ENSMUSG00000086353.1, intron 1 of 5) 17629 ENSMUSG00000083966.1 ENSMUSG00000083966 ENSMUST00000119842 Gm13482 processed_pseudogene Interval_165372 chr9 46819495 46820071 + 0 NA Intergenic Intergenic -10556 ENSMUSG00000111236.1 ENSMUSG00000111236 ENSMUST00000215504 Gm31614 lincRNA Interval_7386 chr1 130778094 130779249 + 0 NA intron (ENSMUSG00000100106.1, intron 2 of 3) lincRNA-intron (ENSMUSG00000100106.1, intron 2 of 3) 12287 ENSMUSG00000100106.1 ENSMUSG00000100106 ENSMUST00000189150 Gm28856 lincRNA Interval_127043 chr5 99900016 99900738 + 0 NA Intergenic Intergenic -5890 ENSMUSG00000105078.2 ENSMUSG00000105078 ENSMUST00000200398 Vamp9 protein_coding Interval_85766 chr19 30573780 30574006 + 0 NA intron (ENSMUSG00000052920.16, intron 9 of 10) protein_coding-intron (ENSMUSG00000052920.16, intron 16 of 17) -24228 ENSMUSG00000024868.8 ENSMUSG00000024868 ENSMUST00000025803 Dkk1 protein_coding Interval_102627 chr3 28652430 28653295 + 0 NA intron (ENSMUSG00000027692.16, intron 25 of 30) protein_coding-intron (ENSMUSG00000027692.16, intron 25 of 30) -68655 ENSMUSG00000027690.13 ENSMUSG00000027690 ENSMUST00000169047 Slc2a2 protein_coding Interval_86022 chr19 34981272 34981774 + 0 NA Intergenic Intergenic 6376 ENSMUSG00000024795.11 ENSMUSG00000024795 ENSMUST00000225625 Kif20b protein_coding Interval_4047 chr1 66827032 66827312 + 0 NA Intergenic Intergenic -1258 ENSMUSG00000103553.1 ENSMUSG00000103553 ENSMUST00000193555 Gm38218 TEC Interval_102640 chr3 28765083 28765318 + 0 NA exon (ENSMUSG00000070522.4, exon 1 of 1) processed_pseudogene-exon (ENSMUSG00000070522.4, exon 1 of 1) 160 ENSMUSG00000070522.4 ENSMUSG00000070522 ENSMUST00000094335 Gm6505 processed_pseudogene Interval_13191 chr10 12922358 12923684 + 0 NA promoter-TSS (ENSMUSG00000097378.8) lincRNA-promoter-TSS (ENSMUSG00000097378.8) 69 ENSMUSG00000097378.8 ENSMUSG00000097378 ENSMUST00000180529 B230208H11Rik lincRNA Interval_89865 chr2 26091049 26092588 + 0 NA promoter-TSS (ENSMUSG00000026932.14) protein_coding-promoter-TSS (ENSMUSG00000026932.14) 1 ENSMUSG00000026932.14 ENSMUSG00000026932 ENSMUST00000149408 Nacc2 protein_coding Interval_117746 chr4 125983340 125983949 + 0 NA Intergenic Intergenic -41082 ENSMUSG00000028859.14 ENSMUSG00000028859 ENSMUST00000140426 Csf3r protein_coding Interval_112605 chr4 43522594 43524886 + 0 NA promoter-TSS (ENSMUSG00000028464.16) protein_coding-promoter-TSS (ENSMUSG00000028464.16) 25 ENSMUSG00000028464.16 ENSMUSG00000028464 ENSMUST00000150592 Tpm2 protein_coding Interval_32167 chr11 105888910 105889910 + 0 NA intron (ENSMUSG00000053580.16, intron 14 of 25) protein_coding-intron (ENSMUSG00000053580.16, intron 14 of 25) 13505 ENSMUSG00000081270.1 ENSMUSG00000081270 ENSMUST00000119992 Gm11653 processed_pseudogene Interval_79800 chr18 35180442 35180863 + 0 NA intron (ENSMUSG00000037815.7, intron 4 of 15) protein_coding-intron (ENSMUSG00000037815.7, intron 6 of 17) 34372 ENSMUSG00000071862.3 ENSMUSG00000071862 ENSMUST00000236680 Lrrtm2 protein_coding Interval_120562 chr4 149396570 149397185 + 0 NA intron (ENSMUSG00000028960.20, intron 1 of 2) protein_coding-intron (ENSMUSG00000028960.20, intron 2 of 9) 29108 ENSMUSG00000028960.20 ENSMUSG00000028960 ENSMUST00000131986 Ube4b protein_coding Interval_54451 chr14 69830555 69831463 + 0 NA Intergenic Intergenic -9411 ENSMUSG00000022085.4 ENSMUSG00000022085 ENSMUST00000022678 Pebp4 protein_coding Interval_33828 chr11 118793433 118794384 + 0 NA TTS (ENSMUSG00000085059.1) lincRNA-TTS (ENSMUSG00000085059.1) 2536 ENSMUSG00000085059.1 ENSMUSG00000085059 ENSMUST00000146016 Gm11750 lincRNA Interval_19629 chr10 106157746 106157939 + 0 NA Intergenic Intergenic 11417 ENSMUSG00000112668.1 ENSMUSG00000112668 ENSMUST00000217719 Gm48376 processed_pseudogene Interval_165786 chr9 53022359 53022662 + 0 NA Intergenic Intergenic -141678 ENSMUSG00000111693.1 ENSMUSG00000111693 ENSMUST00000213563 Gm47986 processed_pseudogene Interval_36132 chr12 36199110 36199540 + 0 NA Intergenic Intergenic 18893 ENSMUSG00000020545.14 ENSMUSG00000020545 ENSMUST00000222145 Lrrc72 protein_coding Interval_69162 chr16 91061809 91062639 + 0 NA intron (ENSMUSG00000039851.11, intron 1 of 2) protein_coding-intron (ENSMUSG00000039851.11, intron 1 of 2) 17568 ENSMUSG00000085398.1 ENSMUSG00000085398 ENSMUST00000147848 4931406G06Rik antisense Interval_936 chr1 13297471 13298364 + 0 NA exon (ENSMUSG00000104170.1, exon 1 of 1) TEC-exon (ENSMUSG00000104170.1, exon 1 of 1) 990 ENSMUSG00000104170.1 ENSMUSG00000104170 ENSMUST00000194357 Gm37702 TEC Interval_46539 chr13 66943122 66943322 + 0 NA intron (ENSMUSG00000021518.4, intron 1 of 12) protein_coding-intron (ENSMUSG00000021518.4, intron 1 of 12) -2101 ENSMUSG00000021518.4 ENSMUSG00000021518 ENSMUST00000224175 Ptdss1 protein_coding Interval_166978 chr9 64281039 64282085 + 0 NA promoter-TSS (ENSMUSG00000032397.7) protein_coding-promoter-TSS (ENSMUSG00000032397.7) -41 ENSMUSG00000032397.7 ENSMUSG00000032397 ENSMUST00000034964 Tipin protein_coding Interval_144234 chr7 23470024 23471587 + 0 NA Intergenic Intergenic 16492 ENSMUSG00000092496.1 ENSMUSG00000092496 ENSMUST00000172853 Vmn1r-ps84 unprocessed_pseudogene Interval_58266 chr15 31498058 31498463 + 0 NA intron (ENSMUSG00000039100.10, intron 6 of 25) protein_coding-intron (ENSMUSG00000039100.10, intron 6 of 25) -11331 ENSMUSG00000115383.1 ENSMUSG00000115383 ENSMUST00000227757 Gm49216 sense_overlapping Interval_150021 chr7 105033765 105034010 + 0 NA intron (ENSMUSG00000073915.5, intron 1 of 2) protein_coding-intron (ENSMUSG00000073915.5, intron 1 of 1) 1189 ENSMUSG00000073915.5 ENSMUSG00000073915 ENSMUST00000098162 Olfr676 protein_coding Interval_147475 chr7 67613914 67614458 + 0 NA intron (ENSMUSG00000030556.13, intron 3 of 3) protein_coding-intron (ENSMUSG00000030556.13, intron 5 of 5) 5812 ENSMUSG00000030556.13 ENSMUSG00000030556 ENSMUST00000189836 Lrrc28 protein_coding Interval_61481 chr15 81883684 81883981 + 0 NA intron (ENSMUSG00000022477.13, intron 1 of 2) protein_coding-intron (ENSMUSG00000022477.13, intron 1 of 17) 11142 ENSMUSG00000022477.13 ENSMUSG00000022477 ENSMUST00000144324 Aco2 protein_coding Interval_22855 chr11 16780454 16782272 + 0 NA intron (ENSMUSG00000020122.16, intron 1 of 15) protein_coding-intron (ENSMUSG00000020122.16, intron 1 of 27) 29133 ENSMUSG00000020122.16 ENSMUSG00000020122 ENSMUST00000138518 Egfr protein_coding Interval_101779 chr3 9530032 9531828 + 0 NA intron (ENSMUSG00000040209.12, intron 1 of 9) protein_coding-intron (ENSMUSG00000040209.12, intron 2 of 8) 34369 ENSMUSG00000040209.12 ENSMUSG00000040209 ENSMUST00000192832 Zfp704 protein_coding Interval_40699 chr12 107560039 107560729 + 0 NA Intergenic Intergenic -52616 ENSMUSG00000079359.2 ENSMUSG00000079359 ENSMUST00000165520 Gm9006 processed_pseudogene Interval_163025 chr9 14631765 14632735 + 0 NA intron (ENSMUSG00000013076.17, intron 2 of 13) protein_coding-intron (ENSMUSG00000013076.17, intron 2 of 13) -12291 ENSMUSG00000111198.1 ENSMUSG00000111198 ENSMUST00000214353 Gm34263 lincRNA Interval_163005 chr9 14451080 14452009 + 0 NA exon (ENSMUSG00000098832.2, exon 1 of 1) unprocessed_pseudogene-exon (ENSMUSG00000098832.2, exon 1 of 1) 478 ENSMUSG00000098832.2 ENSMUSG00000098832 ENSMUST00000184843 Kdm4dl unprocessed_pseudogene Interval_40146 chr12 101955703 101956456 + 0 NA intron (ENSMUSG00000021189.11, intron 1 of 8) protein_coding-intron (ENSMUSG00000021189.11, intron 1 of 10) 2164 ENSMUSG00000021189.11 ENSMUSG00000021189 ENSMUST00000159883 Atxn3 protein_coding Interval_40331 chr12 103775211 103776026 + 0 NA exon (ENSMUSG00000071178.11, exon 2 of 6) protein_coding-exon (ENSMUSG00000071178.11, exon 2 of 6) -2026 ENSMUSG00000071177.4 ENSMUSG00000071177 ENSMUST00000078869 Serpina1d protein_coding Interval_91632 chr2 45024246 45025117 + 0 NA intron (ENSMUSG00000026872.18, intron 2 of 3) protein_coding-intron (ENSMUSG00000026872.18, intron 2 of 9) -1504 ENSMUSG00000092679.1 ENSMUSG00000092679 ENSMUST00000174938 Mir5129 miRNA Interval_68444 chr16 76898039 76898399 + 0 NA intron (ENSMUSG00000100857.2, intron 1 of 7) lincRNA-intron (ENSMUSG00000100857.2, intron 1 of 7) -43397 ENSMUSG00000116807.1 ENSMUSG00000116807 ENSMUST00000231248 Gm7501 processed_pseudogene Interval_13757 chr10 21849611 21849950 + 0 NA Intergenic Intergenic -4929 ENSMUSG00000097107.1 ENSMUSG00000097107 ENSMUST00000180731 Platr6 lincRNA Interval_35544 chr12 24644212 24644680 + 0 NA Intergenic Intergenic -5436 ENSMUSG00000066553.5 ENSMUSG00000066553 ENSMUST00000140065 Gm6969 processed_pseudogene Interval_167817 chr9 72861876 72862471 + 0 NA intron (ENSMUSG00000036030.9, intron 11 of 19) protein_coding-intron (ENSMUSG00000036030.9, intron 11 of 19) -7479 ENSMUSG00000102971.1 ENSMUSG00000102971 ENSMUST00000192843 A730062M13Rik TEC Interval_85821 chr19 32167693 32167966 + 0 NA intron (ENSMUSG00000040451.18, intron 3 of 10) protein_coding-intron (ENSMUSG00000040451.18, intron 5 of 9) 41444 ENSMUSG00000118064.1 ENSMUSG00000118064 ENSMUST00000235377 Gm50210 sense_intronic Interval_137247 chr6 70716886 70717174 + 0 NA Intergenic Intergenic -2044 ENSMUSG00000105646.1 ENSMUSG00000105646 ENSMUST00000197227 Gm30211 lincRNA Interval_114551 chr4 82451831 82452134 + 0 NA intron (ENSMUSG00000008575.17, intron 2 of 4) protein_coding-intron (ENSMUSG00000008575.17, intron 2 of 11) 12572 ENSMUSG00000084595.1 ENSMUSG00000084595 ENSMUST00000122646 n-R5s188 rRNA Interval_32128 chr11 105388535 105388908 + 0 NA intron (ENSMUSG00000078627.9, intron 7 of 11) protein_coding-intron (ENSMUSG00000078627.9, intron 7 of 11) 19986 ENSMUSG00000078627.9 ENSMUSG00000078627 ENSMUST00000100332 Marchf10 protein_coding Interval_88325 chr2 3769337 3770301 + 0 NA promoter-TSS (ENSMUSG00000026655.15) protein_coding-promoter-TSS (ENSMUSG00000026655.15) -14642 ENSMUSG00000085205.1 ENSMUSG00000085205 ENSMUST00000131044 Gm13185 antisense Interval_48969 chr13 106290987 106291745 + 0 NA Intergenic Intergenic -93595 ENSMUSG00000108515.1 ENSMUSG00000108515 ENSMUST00000205589 Olfr717-ps1 unprocessed_pseudogene Interval_1897 chr1 34405240 34405410 + 0 NA Intergenic Intergenic 12661 ENSMUSG00000101462.2 ENSMUSG00000101462 ENSMUST00000188254 Gm3052 transcribed_processed_pseudogene Interval_89819 chr2 25649023 25649221 + 0 NA TTS (ENSMUSG00000118473.1) unitary_pseudogene-TTS (ENSMUSG00000118473.1) -3998 ENSMUSG00000036449.6 ENSMUSG00000036449 ENSMUST00000038482 Lcn8 protein_coding Interval_152338 chr7 132015065 132015518 + 0 NA intron (ENSMUSG00000030849.18, intron 2 of 6) protein_coding-intron (ENSMUSG00000030849.18, intron 2 of 6) 33827 ENSMUSG00000030862.13 ENSMUSG00000030862 ENSMUST00000136188 Cpxm2 protein_coding Interval_97761 chr2 143909005 143909900 + 0 NA Intergenic Intergenic -5868 ENSMUSG00000015932.8 ENSMUSG00000015932 ENSMUST00000103172 Dstn protein_coding Interval_163896 chr9 27790693 27791963 + 0 NA promoter-TSS (ENSMUSG00000062257.13) protein_coding-promoter-TSS (ENSMUSG00000062257.13) 181 ENSMUSG00000062257.13 ENSMUSG00000062257 ENSMUST00000126845 Opcml protein_coding Interval_95052 chr2 103491045 103491677 + 0 NA Intergenic Intergenic -6236 ENSMUSG00000027187.10 ENSMUSG00000027187 ENSMUST00000111168 Cat protein_coding Interval_9910 chr1 164027554 164028201 + 0 NA Intergenic Intergenic -4083 ENSMUSG00000103960.1 ENSMUSG00000103960 ENSMUST00000195691 Gm37119 processed_pseudogene Interval_54134 chr14 65592831 65593547 + 0 NA promoter-TSS (ENSMUSG00000022031.6) protein_coding-promoter-TSS (ENSMUSG00000022031.6) -137 ENSMUSG00000022031.6 ENSMUSG00000022031 ENSMUST00000224743 Elp3 protein_coding Interval_169595 chr9 99363236 99364343 + 0 NA Intergenic Intergenic -3244 ENSMUSG00000100123.1 ENSMUSG00000100123 ENSMUST00000189195 Gm28087 lincRNA Interval_71765 chr17 25941336 25942400 + 0 NA promoter-TSS (ENSMUSG00000025728.16) protein_coding-promoter-TSS (ENSMUSG00000025728.16) 2963 ENSMUSG00000090113.7 ENSMUSG00000090113 ENSMUST00000162078 Nhlrc4 protein_coding Interval_138340 chr6 87395028 87395429 + 0 NA Intergenic Intergenic -6293 ENSMUSG00000030048.5 ENSMUSG00000030048 ENSMUST00000032127 Gkn3 protein_coding Interval_8051 chr1 135446198 135448493 + 0 NA intron (ENSMUSG00000009418.16, intron 29 of 30) protein_coding-intron (ENSMUSG00000009418.16, intron 28 of 29) 7338 ENSMUSG00000093515.1 ENSMUSG00000093515 ENSMUST00000175639 Mir1231 miRNA Interval_42698 chr13 18133128 18133414 + 0 NA intron (ENSMUSG00000009734.18, intron 2 of 3) protein_coding-intron (ENSMUSG00000009734.18, intron 6 of 7) -33069 ENSMUSG00000113470.1 ENSMUSG00000113470 ENSMUST00000220795 4930448F12Rik lincRNA Interval_19067 chr10 94165544 94166083 + 0 NA intron (ENSMUSG00000005897.14, intron 5 of 13) protein_coding-intron (ENSMUSG00000005897.14, intron 6 of 14) 17790 ENSMUSG00000005897.14 ENSMUSG00000005897 ENSMUST00000099343 Nr2c1 protein_coding Interval_169911 chr9 102887511 102888422 + 0 NA intron (ENSMUSG00000032547.12, intron 7 of 13) protein_coding-intron (ENSMUSG00000032547.12, intron 8 of 14) -10589 ENSMUSG00000032547.12 ENSMUSG00000032547 ENSMUST00000177274 Ryk protein_coding Interval_55623 chr14 96345816 96346093 + 0 NA intron (ENSMUSG00000022076.10, intron 4 of 10) protein_coding-intron (ENSMUSG00000022076.10, intron 4 of 10) -99001 ENSMUSG00000065042.1 ENSMUSG00000065042 ENSMUST00000083108 Gm24043 snRNA Interval_44994 chr13 51210796 51211229 + 0 NA Intergenic Intergenic -4901 ENSMUSG00000113521.1 ENSMUSG00000113521 ENSMUST00000222129 Gm29787 processed_pseudogene Interval_92794 chr2 65476928 65477235 + 0 NA intron (ENSMUSG00000057182.15, intron 20 of 26) protein_coding-intron (ENSMUSG00000057182.15, intron 20 of 26) -32184 ENSMUSG00000086701.1 ENSMUSG00000086701 ENSMUST00000145994 Gm13595 antisense Interval_25246 chr11 45870503 45870706 + 0 NA intron (ENSMUSG00000006169.20, intron 1 of 11) protein_coding-intron (ENSMUSG00000006169.20, intron 1 of 11) -11793 ENSMUSG00000006169.20 ENSMUSG00000006169 ENSMUST00000133715 Clint1 protein_coding Interval_121728 chr5 5826035 5826432 + 0 NA Intergenic Intergenic 28036 ENSMUSG00000104952.1 ENSMUSG00000104952 ENSMUST00000198061 Gm38697 processed_pseudogene Interval_130820 chr5 130940048 130940434 + 0 NA intron (ENSMUSG00000034040.16, intron 6 of 10) protein_coding-intron (ENSMUSG00000034040.16, intron 6 of 10) 19794 ENSMUSG00000107295.1 ENSMUSG00000107295 ENSMUST00000201249 Gm42896 TEC Interval_18845 chr10 91229547 91230075 + 0 NA Intergenic Intergenic 1625 ENSMUSG00000110870.1 ENSMUSG00000110870 ENSMUST00000217534 Gm47081 processed_pseudogene Interval_71830 chr17 26385918 26386270 + 0 NA Intergenic Intergenic -28735 ENSMUSG00000034413.14 ENSMUSG00000034413 ENSMUST00000053020 Neurl1b protein_coding Interval_24860 chr11 40541888 40542164 + 0 NA Intergenic Intergenic 28499 ENSMUSG00000082390.1 ENSMUSG00000082390 ENSMUST00000120460 Gm12136 processed_pseudogene Interval_81370 chr18 59669583 59669925 + 0 NA Intergenic Intergenic 68603 ENSMUSG00000089285.1 ENSMUSG00000089285 ENSMUST00000158660 Gm26028 misc_RNA Interval_109884 chr3 149405761 149406908 + 0 NA intron (ENSMUSG00000106515.4, intron 1 of 3) lincRNA-intron (ENSMUSG00000106515.4, intron 1 of 3) 38967 ENSMUSG00000106515.4 ENSMUSG00000106515 ENSMUST00000199503 Gm30382 lincRNA Interval_147476 chr7 67615869 67616165 + 0 NA intron (ENSMUSG00000030556.13, intron 3 of 3) protein_coding-intron (ENSMUSG00000030556.13, intron 5 of 5) 3981 ENSMUSG00000030556.13 ENSMUSG00000030556 ENSMUST00000189836 Lrrc28 protein_coding Interval_160816 chr8 112695733 112695958 + 0 NA intron (ENSMUSG00000031772.17, intron 3 of 20) protein_coding-intron (ENSMUSG00000031772.17, intron 3 of 23) -77809 ENSMUSG00000031772.17 ENSMUSG00000031772 ENSMUST00000140753 Cntnap4 protein_coding Interval_128196 chr5 111639172 111639851 + 0 NA Intergenic Intergenic 45895 ENSMUSG00000104833.1 ENSMUSG00000104833 ENSMUST00000198964 Gm42489 lincRNA Interval_11073 chr1 179167097 179167293 + 0 NA intron (ENSMUSG00000055067.15, intron 5 of 11) protein_coding-intron (ENSMUSG00000055067.15, intron 2 of 8) -249581 ENSMUSG00000089713.1 ENSMUSG00000089713 ENSMUST00000162545 Gm16564 antisense Interval_61649 chr15 83157080 83157987 + 0 NA exon (ENSMUSG00000018042.18, exon 8 of 8) protein_coding-exon (ENSMUSG00000018042.18, exon 8 of 8) 7889 ENSMUSG00000065176.1 ENSMUSG00000065176 ENSMUST00000083242 Rnu12 snRNA Interval_105230 chr3 84020854 84021938 + 0 NA intron (ENSMUSG00000033767.14, intron 3 of 33) protein_coding-intron (ENSMUSG00000033767.14, intron 3 of 33) 42056 ENSMUSG00000103261.1 ENSMUSG00000103261 ENSMUST00000192340 Gm36981 TEC Interval_65982 chr16 30692178 30695389 + 0 NA Intergenic Intergenic 94060 ENSMUSG00000046546.3 ENSMUSG00000046546 ENSMUST00000059078 Fam43a protein_coding Interval_58812 chr15 38244649 38245279 + 0 NA promoter-TSS (ENSMUSG00000115057.1) processed_pseudogene-promoter-TSS (ENSMUSG00000115057.1) -716 ENSMUSG00000115057.1 ENSMUSG00000115057 ENSMUST00000228373 Gm8705 processed_pseudogene Interval_152607 chr7 135165018 135165848 + 0 NA intron (ENSMUSG00000058325.6, intron 49 of 51) protein_coding-intron (ENSMUSG00000058325.6, intron 49 of 51) 30569 ENSMUSG00000100717.6 ENSMUSG00000100717 ENSMUST00000187267 1700120G07Rik lincRNA Interval_46399 chr13 64569061 64570024 + 0 NA Intergenic Intergenic -42318 ENSMUSG00000113850.1 ENSMUSG00000113850 ENSMUST00000222525 Gm47191 transcribed_processed_pseudogene Interval_47048 chr13 74770061 74771200 + 0 NA promoter-TSS (ENSMUSG00000021585.10) protein_coding-promoter-TSS (ENSMUSG00000021585.10) -1769 ENSMUSG00000113015.1 ENSMUSG00000113015 ENSMUST00000222599 Gm6296 processed_pseudogene Interval_138704 chr6 91284760 91286930 + 0 NA Intergenic Intergenic 73018 ENSMUSG00000064080.12 ENSMUSG00000064080 ENSMUST00000137029 Fbln2 protein_coding Interval_156283 chr8 46947524 46948772 + 0 NA intron (ENSMUSG00000109759.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000109759.1, intron 1 of 1) 651 ENSMUSG00000109759.1 ENSMUSG00000109759 ENSMUST00000210613 1700011L03Rik lincRNA Interval_129892 chr5 122941804 122942408 + 0 NA intron (ENSMUSG00000029475.17, intron 8 of 10) protein_coding-intron (ENSMUSG00000029475.17, intron 8 of 22) -20558 ENSMUSG00000029475.17 ENSMUSG00000029475 ENSMUST00000150543 Kdm2b protein_coding Interval_47212 chr13 78152269 78153232 + 0 NA intron (ENSMUSG00000114401.1, intron 1 of 1) protein_coding-intron (ENSMUSG00000064138.14, intron 9 of 9) -18880 ENSMUSG00000114649.1 ENSMUSG00000114649 ENSMUST00000225503 3110006O06Rik lincRNA Interval_121631 chr5 4077883 4078120 + 0 NA intron (ENSMUSG00000040407.18, intron 47 of 47) protein_coding-intron (ENSMUSG00000040407.18, intron 47 of 47) 4430 ENSMUSG00000106535.1 ENSMUSG00000106535 ENSMUST00000198500 Gm43031 sense_intronic Interval_164769 chr9 41575764 41576827 + 0 NA exon (ENSMUSG00000074415.14, exon 1 of 1) processed_transcript-exon (ENSMUSG00000074415.14, exon 1 of 1) -5613 ENSMUSG00000100158.1 ENSMUSG00000100158 ENSMUST00000185538 Gm28119 sense_intronic Interval_20014 chr10 111982235 111982965 + 0 NA intron (ENSMUSG00000063334.16, intron 7 of 9) protein_coding-intron (ENSMUSG00000063334.16, intron 6 of 8) 9807 ENSMUSG00000063334.16 ENSMUSG00000063334 ENSMUST00000174653 Krr1 protein_coding Interval_142668 chr6 144918389 144918600 + 0 NA Intergenic Intergenic -114862 ENSMUSG00000087850.1 ENSMUSG00000087850 ENSMUST00000157225 Gm22792 snoRNA Interval_93782 chr2 76842966 76843901 + 0 NA TTS (ENSMUSG00000051747.15) protein_coding-TTS (ENSMUSG00000051747.15) -6619 ENSMUSG00000051747.15 ENSMUSG00000051747 ENSMUST00000147048 Ttn protein_coding Interval_148498 chr7 81828429 81830113 + 0 NA promoter-TSS (ENSMUSG00000025103.8) protein_coding-promoter-TSS (ENSMUSG00000025103.8) -216 ENSMUSG00000025103.8 ENSMUSG00000025103 ENSMUST00000208566 Btbd1 protein_coding Interval_107740 chr3 112474741 112474977 + 0 NA Intergenic Intergenic -116704 ENSMUSG00000105785.1 ENSMUSG00000105785 ENSMUST00000198956 Gm42526 processed_pseudogene Interval_31814 chr11 103096989 103097856 + 0 NA intron (ENSMUSG00000020937.14, intron 1 of 1) protein_coding-intron (ENSMUSG00000020937.14, intron 1 of 14) 4196 ENSMUSG00000020937.14 ENSMUSG00000020937 ENSMUST00000142970 Plcd3 protein_coding Interval_152308 chr7 131609445 131610269 + 0 NA intron (ENSMUSG00000030849.18, intron 2 of 6) protein_coding-intron (ENSMUSG00000030849.18, intron 2 of 6) 5131 ENSMUSG00000062758.6 ENSMUSG00000062758 ENSMUST00000085365 Gm16477 processed_pseudogene Interval_7057 chr1 124556365 124556671 + 0 NA intron (ENSMUSG00000036815.17, intron 1 of 2) protein_coding-intron (ENSMUSG00000036815.17, intron 1 of 2) 59078 ENSMUSG00000101006.1 ENSMUSG00000101006 ENSMUST00000189908 Gm28299 processed_pseudogene Interval_140133 chr6 114683984 114685634 + 0 NA TTS (ENSMUSG00000030314.16) protein_coding-TTS (ENSMUSG00000030314.16) 1525 ENSMUSG00000030314.16 ENSMUSG00000030314 ENSMUST00000182934 Atg7 protein_coding Interval_38137 chr12 75885003 75885235 + 0 NA intron (ENSMUSG00000063450.14, intron 6 of 12) protein_coding-intron (ENSMUSG00000063450.14, intron 6 of 115) -23984 ENSMUSG00000092922.1 ENSMUSG00000092922 ENSMUST00000175181 Mir5101 miRNA Interval_168245 chr9 78166696 78167786 + 0 NA intron (ENSMUSG00000009828.15, intron 6 of 6) protein_coding-intron (ENSMUSG00000009828.15, intron 13 of 13) 8392 ENSMUSG00000065037.1 ENSMUSG00000065037 ENSMUST00000083103 Rn7sk misc_RNA Interval_117031 chr4 119115683 119116897 + 0 NA intron (ENSMUSG00000028645.11, intron 2 of 4) protein_coding-intron (ENSMUSG00000028645.11, intron 1 of 9) 7421 ENSMUSG00000028645.11 ENSMUSG00000028645 ENSMUST00000174372 Slc2a1 protein_coding Interval_143672 chr7 14317000 14318040 + 0 NA Intergenic Intergenic 12740 ENSMUSG00000098506.2 ENSMUSG00000098506 ENSMUST00000185066 Phf20-ps processed_pseudogene Interval_34508 chr12 4737979 4738256 + 0 NA promoter-TSS (ENSMUSG00000079177.4) protein_coding-promoter-TSS (ENSMUSG00000079177.4) 201 ENSMUSG00000079177.4 ENSMUSG00000079177 ENSMUST00000220075 Fam228a protein_coding Interval_115744 chr4 103237791 103238898 + 0 NA intron (ENSMUSG00000028520.12, intron 5 of 7) protein_coding-intron (ENSMUSG00000028520.12, intron 6 of 8) 20642 ENSMUSG00000107726.1 ENSMUSG00000107726 ENSMUST00000204816 Gm44037 lincRNA Interval_50755 chr14 19170537 19170811 + 0 NA Intergenic Intergenic 10979 ENSMUSG00000091557.2 ENSMUSG00000091557 ENSMUST00000171982 Gm8584 unprocessed_pseudogene Interval_145883 chr7 41372276 41372519 + 0 NA TTS (ENSMUSG00000056383.10) protein_coding-TTS (ENSMUSG00000056383.10) 20915 ENSMUSG00000056383.10 ENSMUSG00000056383 ENSMUST00000206430 AI987944 protein_coding Interval_159526 chr8 95235769 95236134 + 0 NA Intergenic Intergenic 64715 ENSMUSG00000031789.17 ENSMUSG00000031789 ENSMUST00000212237 Cngb1 protein_coding Interval_39804 chr12 98590745 98591847 + 0 NA Intergenic Intergenic -5320 ENSMUSG00000113849.1 ENSMUSG00000113849 ENSMUST00000221302 Gm47346 TEC Interval_170452 chr9 108067467 108068676 + 0 NA intron (ENSMUSG00000041528.15, intron 15 of 38) protein_coding-intron (ENSMUSG00000041528.15, intron 15 of 38) 11304 ENSMUSG00000041528.15 ENSMUSG00000041528 ENSMUST00000159372 Rnf123 protein_coding Interval_99085 chr2 157078215 157079905 + 0 NA exon (ENSMUSG00000055485.6, exon 1 of 15) protein_coding-exon (ENSMUSG00000055485.6, exon 1 of 15) -7995 ENSMUSG00000074628.9 ENSMUSG00000074628 ENSMUST00000099140 Tldc2 protein_coding Interval_13165 chr10 12709305 12709674 + 0 NA intron (ENSMUSG00000019820.11, intron 23 of 74) protein_coding-intron (ENSMUSG00000019820.11, intron 22 of 73) -20627 ENSMUSG00000019820.11 ENSMUSG00000019820 ENSMUST00000219135 Utrn protein_coding Interval_31448 chr11 100737720 100738836 + 0 NA promoter-TSS (ENSMUSG00000019173.11) protein_coding-promoter-TSS (ENSMUSG00000019173.11) -8063 ENSMUSG00000019173.11 ENSMUSG00000019173 ENSMUST00000155500 Rab5c protein_coding Interval_153913 chr8 10981026 10982173 + 0 NA Intergenic Intergenic -10785 ENSMUSG00000109508.1 ENSMUSG00000109508 ENSMUST00000208277 Gm44956 lincRNA Interval_150631 chr7 112933508 112934111 + 0 NA Intergenic Intergenic -20153 ENSMUSG00000098132.1 ENSMUSG00000098132 ENSMUST00000182858 Rassf10 protein_coding Interval_95744 chr2 115670900 115671161 + 0 NA intron (ENSMUSG00000040282.13, intron 7 of 10) protein_coding-intron (ENSMUSG00000040282.13, intron 7 of 10) 32305 ENSMUSG00000088606.1 ENSMUSG00000088606 ENSMUST00000157981 Mir1951 miRNA Interval_60010 chr15 63808698 63808892 + 0 NA promoter-TSS (ENSMUSG00000079025.9) protein_coding-promoter-TSS (ENSMUSG00000079025.9) -36 ENSMUSG00000079025.9 ENSMUSG00000079025 ENSMUST00000173503 Gsdmc protein_coding Interval_60726 chr15 76389049 76389274 + 0 NA promoter-TSS (ENSMUSG00000022558.16) protein_coding-promoter-TSS (ENSMUSG00000022558.16) 8608 ENSMUSG00000022558.16 ENSMUSG00000022558 ENSMUST00000161350 Mroh1 protein_coding Interval_47916 chr13 94361251 94361979 + 0 NA intron (ENSMUSG00000021686.6, intron 1 of 26) protein_coding-intron (ENSMUSG00000021686.6, intron 1 of 26) -2692 ENSMUSG00000042857.3 ENSMUSG00000042857 ENSMUST00000221110 Gm9776 bidirectional_promoter_lncRNA Interval_151652 chr7 125701628 125701891 + 0 NA intron (ENSMUSG00000032777.9, intron 2 of 5) protein_coding-intron (ENSMUSG00000032777.9, intron 2 of 36) -6158 ENSMUSG00000032743.15 ENSMUSG00000032743 ENSMUST00000155059 D430042O09Rik protein_coding Interval_140048 chr6 113644538 113645509 + 0 NA intron (ENSMUSG00000060477.14, intron 1 of 11) protein_coding-intron (ENSMUSG00000060477.14, intron 1 of 12) -3502 ENSMUSG00000107723.1 ENSMUSG00000107723 ENSMUST00000203570 Gm43964 antisense Interval_116066 chr4 107367378 107368537 + 0 NA promoter-TSS (ENSMUSG00000028614.14) protein_coding-promoter-TSS (ENSMUSG00000028614.14) -13128 ENSMUSG00000028614.14 ENSMUSG00000028614 ENSMUST00000132950 Ndc1 protein_coding Interval_6985 chr1 121551065 121551922 + 0 NA Intergenic Intergenic 7722 ENSMUSG00000001674.11 ENSMUSG00000001674 ENSMUST00000131471 Ddx18 protein_coding Interval_109887 chr3 149493550 149493989 + 0 NA Intergenic Intergenic -48468 ENSMUSG00000106515.4 ENSMUSG00000106515 ENSMUST00000199503 Gm30382 lincRNA Interval_99175 chr2 157777148 157777709 + 0 NA intron (ENSMUSG00000027649.15, intron 2 of 15) protein_coding-intron (ENSMUSG00000027649.15, intron 2 of 15) -12436 ENSMUSG00000027649.15 ENSMUSG00000027649 ENSMUST00000156300 Ctnnbl1 protein_coding Interval_52856 chr14 51127890 51128152 + 0 NA promoter-TSS (ENSMUSG00000021880.7) protein_coding-promoter-TSS (ENSMUSG00000021880.7) -1060 ENSMUSG00000021880.7 ENSMUSG00000021880 ENSMUST00000228752 Rnase6 protein_coding Interval_70650 chr17 12802191 12802572 + 0 NA intron (ENSMUSG00000078247.5, intron 2 of 2) antisense-intron (ENSMUSG00000078247.5, intron 1 of 1) -1586 ENSMUSG00000117061.1 ENSMUSG00000117061 ENSMUST00000233721 Gm49958 lincRNA Interval_828 chr1 12064765 12065003 + 0 NA Intergenic Intergenic -56076 ENSMUSG00000101610.1 ENSMUSG00000101610 ENSMUST00000187748 Gm7560 processed_pseudogene Interval_61309 chr15 80742880 80744138 + 0 NA intron (ENSMUSG00000047888.10, intron 1 of 24) protein_coding-intron (ENSMUSG00000047888.10, intron 1 of 24) 31238 ENSMUSG00000116480.1 ENSMUSG00000116480 ENSMUST00000230620 Gm49512 sense_intronic Interval_31243 chr11 99094843 99095694 + 0 NA Intergenic Intergenic -19927 ENSMUSG00000017607.9 ENSMUSG00000017607 ENSMUST00000123303 Tns4 protein_coding Interval_105473 chr3 86857652 86858215 + 0 NA intron (ENSMUSG00000028078.14, intron 2 of 15) protein_coding-intron (ENSMUSG00000028078.14, intron 2 of 15) -6559 ENSMUSG00000104074.1 ENSMUSG00000104074 ENSMUST00000195159 Gm37025 processed_pseudogene Interval_173873 chrX 106495159 106495389 + 0 NA Intergenic Intergenic -60431 ENSMUSG00000033737.14 ENSMUSG00000033737 ENSMUST00000140707 Fndc3c1 protein_coding Interval_137911 chr6 83305177 83305389 + 0 NA TTS (ENSMUSG00000005667.8) protein_coding-TTS (ENSMUSG00000005667.8) 11660 ENSMUSG00000108053.1 ENSMUSG00000108053 ENSMUST00000203437 Gm43890 TEC Interval_76246 chr17 78417306 78418411 + 0 NA promoter-TSS (ENSMUSG00000056121.16) protein_coding-promoter-TSS (ENSMUSG00000056121.16) 9042 ENSMUSG00000117525.1 ENSMUSG00000117525 ENSMUST00000234569 Gm50034 antisense Interval_26604 chr11 59155627 59156084 + 0 NA exon (ENSMUSG00000049287.5, exon 3 of 3) protein_coding-exon (ENSMUSG00000049287.5, exon 3 of 3) 7845 ENSMUSG00000049287.5 ENSMUSG00000049287 ENSMUST00000137433 Iba57 protein_coding Interval_63879 chr16 4191840 4192309 + 0 NA intron (ENSMUSG00000022521.10, intron 1 of 29) protein_coding-intron (ENSMUSG00000022521.10, intron 1 of 30) -18438 ENSMUSG00000103937.1 ENSMUSG00000103937 ENSMUST00000195629 Gm37186 TEC Interval_151293 chr7 120727719 120728092 + 0 NA promoter-TSS (ENSMUSG00000046096.7) protein_coding-promoter-TSS (ENSMUSG00000046096.7) 1729 ENSMUSG00000046096.7 ENSMUSG00000046096 ENSMUST00000208534 Mosmo protein_coding Interval_20613 chr10 119471183 119471562 + 0 NA promoter-TSS (ENSMUSG00000112287.1) TEC-promoter-TSS (ENSMUSG00000112287.1) 54 ENSMUSG00000112287.1 ENSMUSG00000112287 ENSMUST00000219397 Gm47024 TEC Interval_65873 chr16 29964022 29964295 + 0 NA intron (ENSMUSG00000075286.4, intron 1 of 5) lincRNA-intron (ENSMUSG00000075286.4, intron 1 of 5) 15026 ENSMUSG00000075286.4 ENSMUSG00000075286 ENSMUST00000100016 Gm1968 lincRNA Interval_58256 chr15 31429779 31430485 + 0 NA Intergenic Intergenic 16685 ENSMUSG00000068964.5 ENSMUSG00000068964 ENSMUST00000091031 Gm6361 processed_pseudogene Interval_92646 chr2 61868152 61868609 + 0 NA Intergenic Intergenic 65450 ENSMUSG00000035033.15 ENSMUSG00000035033 ENSMUST00000131538 Tbr1 protein_coding Interval_168905 chr9 88501676 88502996 + 0 NA intron (ENSMUSG00000097195.10, intron 4 of 5) processed_transcript-intron (ENSMUSG00000097195.10, intron 4 of 5) 19264 ENSMUSG00000094263.1 ENSMUSG00000094263 ENSMUST00000178154 Snord50a snoRNA Interval_145481 chr7 35118192 35120955 + 0 NA promoter-TSS (ENSMUSG00000108624.1) antisense-promoter-TSS (ENSMUSG00000108624.1) 32 ENSMUSG00000108624.1 ENSMUSG00000108624 ENSMUST00000205799 Gm45091 antisense Interval_96583 chr2 125917764 125918353 + 0 NA intron (ENSMUSG00000027207.15, intron 5 of 5) protein_coding-intron (ENSMUSG00000027207.15, intron 5 of 9) 51815 ENSMUSG00000027207.15 ENSMUSG00000027207 ENSMUST00000110454 Galk2 protein_coding Interval_81839 chr18 65180855 65181093 + 0 NA promoter-TSS (ENSMUSG00000024589.18) protein_coding-promoter-TSS (ENSMUSG00000024589.18) -63313 ENSMUSG00000118017.1 ENSMUSG00000118017 ENSMUST00000235231 Gm29966 lincRNA Interval_122756 chr5 25156542 25158240 + 0 NA Intergenic Intergenic 11073 ENSMUSG00000077832.1 ENSMUSG00000077832 ENSMUST00000104642 Gm26051 miRNA Interval_13730 chr10 21510106 21510539 + 0 NA Intergenic Intergenic -64686 ENSMUSG00000112738.1 ENSMUSG00000112738 ENSMUST00000219604 Gm48386 processed_pseudogene Interval_80609 chr18 44584703 44585514 + 0 NA intron (ENSMUSG00000071856.10, intron 3 of 18) protein_coding-intron (ENSMUSG00000071856.10, intron 3 of 18) -76995 ENSMUSG00000097610.2 ENSMUSG00000097610 ENSMUST00000202771 A930012L18Rik antisense Interval_71904 chr17 26914924 26915474 + 0 NA intron (ENSMUSG00000118147.1, intron 1 of 4) sense_overlapping-intron (ENSMUSG00000118147.1, intron 1 of 4) -1892 ENSMUSG00000024301.10 ENSMUSG00000024301 ENSMUST00000235206 Kifc5b protein_coding Interval_115624 chr4 101455964 101456742 + 0 NA intron (ENSMUSG00000028527.18, intron 1 of 3) protein_coding-intron (ENSMUSG00000028527.18, intron 3 of 5) 9130 ENSMUSG00000028527.18 ENSMUSG00000028527 ENSMUST00000155749 Ak4 protein_coding Interval_132239 chr5 143536863 143537458 + 0 NA Intergenic Intergenic 11500 ENSMUSG00000105198.1 ENSMUSG00000105198 ENSMUST00000198550 Gm42502 TEC Interval_122957 chr5 27828836 27830980 + 0 NA Intergenic Intergenic 8938 ENSMUSG00000105375.1 ENSMUSG00000105375 ENSMUST00000196610 Gm20239 processed_pseudogene Interval_129633 chr5 121438467 121439343 + 0 NA promoter-TSS (ENSMUSG00000042719.17) protein_coding-promoter-TSS (ENSMUSG00000042719.17) -1098 ENSMUSG00000042719.17 ENSMUSG00000042719 ENSMUST00000174322 Naa25 protein_coding Interval_8313 chr1 137206217 137206785 + 0 NA Intergenic Intergenic 9146 ENSMUSG00000077207.1 ENSMUSG00000077207 ENSMUST00000104019 Gm25609 snRNA Interval_83595 chr18 90429864 90431102 + 0 NA Intergenic Intergenic 52977 ENSMUSG00000117805.1 ENSMUSG00000117805 ENSMUST00000237124 Gm18280 lincRNA Interval_67219 chr16 44509539 44509800 + 0 NA intron (ENSMUSG00000022687.12, intron 3 of 18) protein_coding-intron (ENSMUSG00000022687.12, intron 3 of 18) 48460 ENSMUSG00000093046.1 ENSMUSG00000093046 ENSMUST00000175305 Mir3081 miRNA Interval_168949 chr9 89497057 89497413 + 0 NA Intergenic Intergenic 63149 ENSMUSG00000111806.1 ENSMUSG00000111806 ENSMUST00000217127 Gm47403 lincRNA Interval_76807 chr17 84203167 84203921 + 0 NA intron (ENSMUSG00000024251.10, intron 11 of 12) protein_coding-intron (ENSMUSG00000024251.10, intron 36 of 37) -15597 ENSMUSG00000045817.8 ENSMUSG00000045817 ENSMUST00000060366 Zfp36l2 protein_coding Interval_149765 chr7 101341004 101341830 + 0 NA intron (ENSMUSG00000030688.15, intron 2 of 6) protein_coding-intron (ENSMUSG00000030688.15, intron 2 of 6) 3290 ENSMUSG00000110099.1 ENSMUSG00000110099 ENSMUST00000211610 Gm45344 processed_pseudogene Interval_141300 chr6 127064730 127065085 + 0 NA Intergenic Intergenic -7995 ENSMUSG00000000182.9 ENSMUSG00000000182 ENSMUST00000000186 Fgf23 protein_coding Interval_167276 chr9 66974795 66975572 + 0 NA exon (ENSMUSG00000032370.8, exon 1 of 6) protein_coding-exon (ENSMUSG00000032370.8, exon 1 of 6) 237 ENSMUSG00000032370.8 ENSMUSG00000032370 ENSMUST00000034929 Lactb protein_coding Interval_155962 chr8 41300893 41301519 + 0 NA intron (ENSMUSG00000031592.10, intron 23 of 38) protein_coding-intron (ENSMUSG00000031592.10, intron 22 of 37) 61428 ENSMUSG00000031592.10 ENSMUSG00000031592 ENSMUST00000211247 Pcm1 protein_coding Interval_139958 chr6 113053631 113054039 + 0 NA intron (ENSMUSG00000030264.14, intron 3 of 3) protein_coding-intron (ENSMUSG00000030264.14, intron 3 of 9) -6863 ENSMUSG00000077431.1 ENSMUSG00000077431 ENSMUST00000104243 Gm22591 snRNA Interval_16315 chr10 62144044 62144332 + 0 NA promoter-TSS (ENSMUSG00000020083.13) protein_coding-promoter-TSS (ENSMUSG00000020083.13) -9482 ENSMUSG00000020083.13 ENSMUSG00000020083 ENSMUST00000138450 Fam241b protein_coding Interval_71845 chr17 26478637 26479127 + 0 NA intron (ENSMUSG00000118107.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000118107.1, intron 1 of 2) 12027 ENSMUSG00000118107.1 ENSMUSG00000118107 ENSMUST00000236309 Gm34455 lincRNA Interval_127283 chr5 102085292 102085475 + 0 NA Intergenic Intergenic 15165 ENSMUSG00000106492.1 ENSMUSG00000106492 ENSMUST00000196325 Gm29707 lincRNA Interval_56432 chr14 118705597 118706917 + 0 NA promoter-TSS (ENSMUSG00000032849.14) protein_coding-promoter-TSS (ENSMUSG00000032849.14) -6765 ENSMUSG00000032849.14 ENSMUSG00000032849 ENSMUST00000227480 Abcc4 protein_coding Interval_167102 chr9 65255913 65258015 + 0 NA Intergenic Intergenic -8859 ENSMUSG00000042254.14 ENSMUSG00000042254 ENSMUST00000141382 Cilp protein_coding Interval_124910 chr5 60252292 60252688 + 0 NA Intergenic Intergenic 21007 ENSMUSG00000087034.4 ENSMUSG00000087034 ENSMUST00000117165 Cbfa2t2-ps1 processed_pseudogene Interval_153416 chr7 144561825 144562385 + 0 NA Intergenic Intergenic -5250 ENSMUSG00000073778.2 ENSMUSG00000073778 ENSMUST00000097928 Faddos antisense Interval_118264 chr4 129920312 129920539 + 0 NA TTS (ENSMUSG00000086369.7) lincRNA-TTS (ENSMUSG00000086369.7) 14209 ENSMUSG00000086369.7 ENSMUSG00000086369 ENSMUST00000139190 E330017L17Rik lincRNA Interval_132915 chr5 148723943 148724357 + 0 NA Intergenic Intergenic 12684 ENSMUSG00000106733.1 ENSMUSG00000106733 ENSMUST00000200820 Gm36186 lincRNA Interval_80761 chr18 46908888 46909657 + 0 NA promoter-TSS (ENSMUSG00000117630.1) processed_pseudogene-promoter-TSS (ENSMUSG00000117630.1) -347 ENSMUSG00000117630.1 ENSMUSG00000117630 ENSMUST00000234575 Gm49973 processed_pseudogene Interval_104796 chr3 73568808 73569264 + 0 NA intron (ENSMUSG00000103428.1, intron 4 of 4) lincRNA-intron (ENSMUSG00000103428.1, intron 4 of 4) -87385 ENSMUSG00000102362.1 ENSMUSG00000102362 ENSMUST00000194514 4930509J09Rik lincRNA Interval_68198 chr16 67665308 67665824 + 0 NA Intergenic Intergenic -72340 ENSMUSG00000082823.3 ENSMUSG00000082823 ENSMUST00000119911 Gm15828 processed_pseudogene Interval_3873 chr1 64066940 64067168 + 0 NA intron (ENSMUSG00000025959.13, intron 2 of 3) protein_coding-intron (ENSMUSG00000025959.13, intron 3 of 3) -11600 ENSMUSG00000086836.1 ENSMUSG00000086836 ENSMUST00000149820 Gm13748 antisense Interval_6173 chr1 99454235 99454629 + 0 NA Intergenic Intergenic 185809 ENSMUSG00000099453.1 ENSMUSG00000099453 ENSMUST00000191164 Gm18248 processed_pseudogene Interval_46889 chr13 73188538 73188761 + 0 NA Intergenic Intergenic -44746 ENSMUSG00000113952.1 ENSMUSG00000113952 ENSMUST00000223231 Rpl31-ps2 processed_pseudogene Interval_149142 chr7 94784912 94785101 + 0 NA Intergenic Intergenic -182598 ENSMUSG00000108433.1 ENSMUSG00000108433 ENSMUST00000205372 Gm19761 processed_pseudogene Interval_77232 chr17 87494023 87495980 + 0 NA intron (ENSMUSG00000100847.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000100847.1, intron 1 of 1) 4253 ENSMUSG00000100847.1 ENSMUSG00000100847 ENSMUST00000188990 Gm28676 lincRNA Interval_94040 chr2 81990210 81990719 + 0 NA Intergenic Intergenic 132647 ENSMUSG00000082666.1 ENSMUSG00000082666 ENSMUST00000120739 Gm13677 processed_pseudogene Interval_155266 chr8 29278878 29279624 + 0 NA Intergenic Intergenic 7730 ENSMUSG00000110331.1 ENSMUSG00000110331 ENSMUST00000209275 Nudc-ps1 processed_pseudogene Interval_164423 chr9 36916471 36917514 + 0 NA intron (ENSMUSG00000035934.16, intron 5 of 10) protein_coding-intron (ENSMUSG00000035934.16, intron 7 of 12) 84184 ENSMUSG00000032118.16 ENSMUSG00000032118 ENSMUST00000161978 Fez1 protein_coding Interval_24728 chr11 36275641 36276539 + 0 NA intron (ENSMUSG00000049336.16, intron 4 of 28) protein_coding-intron (ENSMUSG00000049336.16, intron 4 of 28) -1951 ENSMUSG00000086375.1 ENSMUSG00000086375 ENSMUST00000123278 Gm12127 antisense Interval_83669 chr19 3597166 3597512 + 0 NA exon (ENSMUSG00000024913.16, exon 18 of 23) protein_coding-exon (ENSMUSG00000024913.16, exon 18 of 23) -21617 ENSMUSG00000024908.15 ENSMUSG00000024908 ENSMUST00000226109 Ppp6r3 protein_coding Interval_11954 chr1 187607128 187607831 + 0 NA Intergenic Intergenic -2217 ENSMUSG00000026610.13 ENSMUSG00000026610 ENSMUST00000110938 Esrrg protein_coding Interval_39118 chr12 85201251 85201889 + 0 NA Intergenic Intergenic -13765 ENSMUSG00000113681.1 ENSMUSG00000113681 ENSMUST00000221330 Gm45930 processed_pseudogene Interval_101026 chr2 174315330 174315780 + 0 NA intron (ENSMUSG00000027523.20, intron 2 of 12) protein_coding-intron (ENSMUSG00000027523.20, intron 1 of 11) -20119 ENSMUSG00000086537.7 ENSMUSG00000086537 ENSMUST00000143738 Gnasas1 antisense Interval_158922 chr8 87974383 87975937 + 0 NA Intergenic Intergenic -21298 ENSMUSG00000045333.15 ENSMUSG00000045333 ENSMUST00000173092 Zfp423 protein_coding Interval_3118 chr1 53632070 53632834 + 0 NA intron (ENSMUSG00000096141.2, intron 13 of 65) protein_coding-intron (ENSMUSG00000096141.2, intron 13 of 65) 74332 ENSMUSG00000096141.2 ENSMUSG00000096141 ENSMUST00000189677 Dnah7a protein_coding Interval_55822 chr14 100707986 100708161 + 0 NA Intergenic Intergenic 7452 ENSMUSG00000092668.1 ENSMUSG00000092668 ENSMUST00000174927 Gm22401 miRNA Interval_85838 chr19 32263672 32264314 + 0 NA intron (ENSMUSG00000040451.18, intron 2 of 9) protein_coding-intron (ENSMUSG00000040451.18, intron 3 of 9) 12971 ENSMUSG00000040451.18 ENSMUSG00000040451 ENSMUST00000141252 Sgms1 protein_coding Interval_71215 chr17 21216214 21216818 + 0 NA Intergenic Intergenic 9486 ENSMUSG00000093788.2 ENSMUSG00000093788 ENSMUST00000177028 Vmn1r-ps147 unprocessed_pseudogene Interval_150762 chr7 114181431 114181674 + 0 NA Intergenic Intergenic 27536 ENSMUSG00000110407.1 ENSMUSG00000110407 ENSMUST00000211484 Gm45454 processed_pseudogene Interval_170299 chr9 106775334 106775507 + 0 NA intron (ENSMUSG00000040661.6, intron 1 of 21) protein_coding-intron (ENSMUSG00000040661.6, intron 1 of 21) 13756 ENSMUSG00000040661.6 ENSMUSG00000040661 ENSMUST00000191300 Rad54l2 protein_coding Interval_15070 chr10 42321988 42322241 + 0 NA intron (ENSMUSG00000038302.14, intron 8 of 10) protein_coding-intron (ENSMUSG00000038302.14, intron 10 of 12) 9149 ENSMUSG00000081873.1 ENSMUSG00000081873 ENSMUST00000120526 Gm15197 processed_pseudogene Interval_165657 chr9 50727349 50728527 + 0 NA promoter-TSS (ENSMUSG00000032064.17) protein_coding-promoter-TSS (ENSMUSG00000032064.17) 18583 ENSMUSG00000032062.3 ENSMUSG00000032062 ENSMUST00000215877 2310030G06Rik protein_coding Interval_71822 chr17 26315695 26315929 + 0 NA Intergenic Intergenic 6810 ENSMUSG00000117551.1 ENSMUSG00000117551 ENSMUST00000234840 Gm50015 lincRNA Interval_138206 chr6 86277545 86278163 + 0 NA Intergenic Intergenic -7033 ENSMUSG00000098175.1 ENSMUSG00000098175 ENSMUST00000182773 Gm7545 processed_pseudogene Interval_12955 chr10 8723348 8723610 + 0 NA exon (ENSMUSG00000015305.6, exon 20 of 20) protein_coding-exon (ENSMUSG00000015305.6, exon 20 of 20) 10238 ENSMUSG00000111215.1 ENSMUSG00000111215 ENSMUST00000213934 Gm48654 lincRNA Interval_96052 chr2 119469569 119470216 + 0 NA intron (ENSMUSG00000034154.15, intron 1 of 27) protein_coding-intron (ENSMUSG00000034154.15, intron 1 of 35) -30212 ENSMUSG00000034154.15 ENSMUSG00000034154 ENSMUST00000138707 Ino80 protein_coding Interval_15947 chr10 59556658 59557144 + 0 NA intron (ENSMUSG00000009647.13, intron 3 of 3) protein_coding-intron (ENSMUSG00000009647.13, intron 1 of 7) -59163 ENSMUSG00000071280.2 ENSMUSG00000071280 ENSMUST00000238281 Gm10322 antisense Interval_77771 chr18 3384917 3385783 + 0 NA intron (ENSMUSG00000024231.15, intron 1 of 8) protein_coding-intron (ENSMUSG00000024231.15, intron 1 of 19) 2118 ENSMUSG00000024231.15 ENSMUSG00000024231 ENSMUST00000159443 Cul2 protein_coding Interval_157978 chr8 77516981 77518511 + 0 NA promoter-TSS (ENSMUSG00000097882.2) antisense-promoter-TSS (ENSMUSG00000097882.2) 37 ENSMUSG00000037148.8 ENSMUSG00000037148 ENSMUST00000210519 Arhgap10 protein_coding Interval_137132 chr6 67887222 67888925 + 0 NA Intergenic Intergenic -4463 ENSMUSG00000105005.1 ENSMUSG00000105005 ENSMUST00000196364 Gm9729 processed_pseudogene Interval_7867 chr1 134269981 134271516 + 0 NA Intergenic Intergenic 10243 ENSMUSG00000096676.1 ENSMUSG00000096676 ENSMUST00000122560 Gm24517 snRNA Interval_17110 chr10 71396421 71396855 + 0 NA intron (ENSMUSG00000060733.13, intron 1 of 2) protein_coding-intron (ENSMUSG00000060733.13, intron 1 of 2) 48802 ENSMUSG00000060733.13 ENSMUSG00000060733 ENSMUST00000145521 Ipmk protein_coding Interval_7168 chr1 127420327 127421303 + 0 NA intron (ENSMUSG00000036155.13, intron 10 of 15) protein_coding-intron (ENSMUSG00000036155.13, intron 12 of 17) 14039 ENSMUSG00000103390.1 ENSMUSG00000103390 ENSMUST00000195573 Gm38301 TEC Interval_63009 chr15 98631275 98632406 + 0 NA promoter-TSS (ENSMUSG00000003352.14) protein_coding-promoter-TSS (ENSMUSG00000003352.14) 35 ENSMUSG00000003352.14 ENSMUSG00000003352 ENSMUST00000230064 Cacnb3 protein_coding Interval_141141 chr6 125215165 125216039 + 0 NA promoter-TSS (ENSMUSG00000030337.16) protein_coding-promoter-TSS (ENSMUSG00000030337.16) -2972 ENSMUSG00000030337.16 ENSMUSG00000030337 ENSMUST00000159547 Vamp1 protein_coding Interval_6861 chr1 120155109 120155683 + 0 NA intron (ENSMUSG00000026388.15, intron 1 of 3) protein_coding-intron (ENSMUSG00000026388.15, intron 2 of 4) 4797 ENSMUSG00000026388.15 ENSMUSG00000026388 ENSMUST00000128578 3110009E18Rik protein_coding Interval_81787 chr18 64673738 64674567 + 0 NA Intergenic Intergenic 10958 ENSMUSG00000118224.1 ENSMUSG00000118224 ENSMUST00000237925 Gm50352 processed_pseudogene Interval_163206 chr9 18278864 18279086 + 0 NA Intergenic Intergenic 10885 ENSMUSG00000111870.1 ENSMUSG00000111870 ENSMUST00000213534 Gm7692 processed_pseudogene Interval_38859 chr12 83453364 83453760 + 0 NA intron (ENSMUSG00000021221.15, intron 1 of 10) protein_coding-intron (ENSMUSG00000021221.15, intron 1 of 8) 34154 ENSMUSG00000021221.15 ENSMUSG00000021221 ENSMUST00000177801 Dpf3 protein_coding Interval_137307 chr6 71221235 71221639 + 0 NA intron (ENSMUSG00000055027.17, intron 6 of 9) protein_coding-intron (ENSMUSG00000055027.17, intron 6 of 9) -4563 ENSMUSG00000055027.17 ENSMUSG00000055027 ENSMUST00000173297 Smyd1 protein_coding Interval_164417 chr9 36881888 36882213 + 0 NA Intergenic Intergenic 49242 ENSMUSG00000032118.16 ENSMUSG00000032118 ENSMUST00000161978 Fez1 protein_coding Interval_35447 chr12 21874199 21874593 + 0 NA Intergenic Intergenic -97689 ENSMUSG00000091105.1 ENSMUSG00000091105 ENSMUST00000164169 Mrto4-ps2 processed_pseudogene Interval_4871 chr1 80643325 80643628 + 0 NA intron (ENSMUSG00000038608.15, intron 2 of 13) protein_coding-intron (ENSMUSG00000038608.15, intron 2 of 55) 26088 ENSMUSG00000103192.1 ENSMUSG00000103192 ENSMUST00000194285 Gm37645 TEC Interval_111289 chr4 17238986 17239648 + 0 NA Intergenic Intergenic 17044 ENSMUSG00000083572.1 ENSMUSG00000083572 ENSMUST00000121293 Gm11849 processed_pseudogene Interval_48973 chr13 106465554 106465759 + 0 NA Intergenic Intergenic -10280 ENSMUSG00000114217.1 ENSMUSG00000114217 ENSMUST00000224407 Gm7054 processed_pseudogene Interval_58045 chr15 27339577 27340291 + 0 NA Intergenic Intergenic -28005 ENSMUSG00000115554.1 ENSMUSG00000115554 ENSMUST00000227785 Gm19111 processed_pseudogene Interval_112485 chr4 41532330 41532698 + 0 NA intron (ENSMUSG00000028439.14, intron 1 of 5) protein_coding-intron (ENSMUSG00000028439.14, intron 1 of 5) 11820 ENSMUSG00000087623.1 ENSMUSG00000087623 ENSMUST00000122839 Gm12404 processed_transcript Interval_165643 chr9 50631894 50633877 + 0 NA Intergenic Intergenic 15364 ENSMUSG00000000167.14 ENSMUSG00000000167 ENSMUST00000125606 Pih1d2 protein_coding Interval_17480 chr10 77151612 77152646 + 0 NA intron (ENSMUSG00000001435.15, intron 2 of 41) protein_coding-intron (ENSMUSG00000001435.15, intron 2 of 41) 15029 ENSMUSG00000112612.1 ENSMUSG00000112612 ENSMUST00000218871 Gm7775 processed_pseudogene Interval_86669 chr19 42431046 42432768 + 0 NA promoter-TSS (ENSMUSG00000042401.8) protein_coding-promoter-TSS (ENSMUSG00000042401.8) -122 ENSMUSG00000042401.8 ENSMUSG00000042401 ENSMUST00000238182 Crtac1 protein_coding Interval_20790 chr10 120961340 120962235 + 0 NA intron (ENSMUSG00000048661.14, intron 1 of 12) protein_coding-intron (ENSMUSG00000048661.14, intron 1 of 13) 12638 ENSMUSG00000093030.1 ENSMUSG00000093030 ENSMUST00000175289 Gm23632 miRNA Interval_66459 chr16 33995731 33996407 + 0 NA intron (ENSMUSG00000061751.16, intron 18 of 26) protein_coding-intron (ENSMUSG00000061751.16, intron 51 of 59) 11388 ENSMUSG00000116835.1 ENSMUSG00000116835 ENSMUST00000231993 Gm49594 processed_pseudogene Interval_143667 chr7 14119647 14121259 + 0 NA intron (ENSMUSG00000074375.3, intron 2 of 5) protein_coding-intron (ENSMUSG00000074375.3, intron 2 of 5) 2591 ENSMUSG00000074375.3 ENSMUSG00000074375 ENSMUST00000098809 Sult2a3 protein_coding Interval_49731 chr13 114309951 114311328 + 0 NA intron (ENSMUSG00000021764.8, intron 4 of 5) protein_coding-intron (ENSMUSG00000021764.8, intron 3 of 4) -26258 ENSMUSG00000114707.1 ENSMUSG00000114707 ENSMUST00000224003 Gm47558 TEC Interval_26057 chr11 53803287 53805317 + 0 NA intron (ENSMUSG00000081769.9, intron 4 of 4) protein_coding-intron (ENSMUSG00000081769.9, intron 3 of 3) -31107 ENSMUSG00000091191.2 ENSMUSG00000091191 ENSMUST00000170390 Gm17334 TEC Interval_75000 chr17 59535117 59535474 + 0 NA Intergenic Intergenic 34370 ENSMUSG00000077562.1 ENSMUSG00000077562 ENSMUST00000104374 Gm23203 snRNA Interval_138496 chr6 88724003 88725176 + 0 NA promoter-TSS (ENSMUSG00000033174.17) protein_coding-promoter-TSS (ENSMUSG00000033174.17) 1271 ENSMUSG00000097730.3 ENSMUSG00000097730 ENSMUST00000181064 Gm26588 antisense Interval_109795 chr3 147181164 147182592 + 0 NA Intergenic Intergenic 11040 ENSMUSG00000103099.1 ENSMUSG00000103099 ENSMUST00000193340 Gm6074 processed_pseudogene Interval_2731 chr1 43970780 43971699 + 0 NA promoter-TSS (ENSMUSG00000041763.14) protein_coding-promoter-TSS (ENSMUSG00000041763.14) 37225 ENSMUSG00000041763.14 ENSMUSG00000041763 ENSMUST00000187115 Tpp2 protein_coding Interval_158434 chr8 83707677 83708182 + 0 NA Intergenic Intergenic -7343 ENSMUSG00000005481.18 ENSMUSG00000005481 ENSMUST00000138789 Ddx39 protein_coding Interval_83636 chr19 3365221 3365781 + 0 NA promoter-TSS (ENSMUSG00000024900.5) protein_coding-promoter-TSS (ENSMUSG00000024900.5) -10843 ENSMUSG00000024900.5 ENSMUSG00000024900 ENSMUST00000238027 Cpt1a protein_coding Interval_13129 chr10 12035242 12035923 + 0 NA Intergenic Intergenic -4142 ENSMUSG00000112775.1 ENSMUSG00000112775 ENSMUST00000220015 Gm48722 lincRNA Interval_71117 chr17 18712893 18713669 + 0 NA Intergenic Intergenic 18878 ENSMUSG00000116837.2 ENSMUSG00000116837 ENSMUST00000231667 Vmn2r-ps115 unprocessed_pseudogene Interval_83588 chr18 90322275 90322458 + 0 NA exon (ENSMUSG00000117726.1, exon 1 of 1) processed_pseudogene-exon (ENSMUSG00000117726.1, exon 1 of 1) 514 ENSMUSG00000117726.1 ENSMUSG00000117726 ENSMUST00000237935 Gm7674 processed_pseudogene Interval_17060 chr10 70946024 70946597 + 0 NA intron (ENSMUSG00000014329.14, intron 3 of 7) protein_coding-intron (ENSMUSG00000014329.14, intron 13 of 21) 2179 ENSMUSG00000014329.14 ENSMUSG00000014329 ENSMUST00000144740 Bicc1 protein_coding Interval_37898 chr12 72878086 72879050 + 0 NA Intergenic Intergenic 27709 ENSMUSG00000021098.14 ENSMUSG00000021098 ENSMUST00000132067 4930447C04Rik protein_coding Interval_160142 chr8 106687428 106687728 + 0 NA intron (ENSMUSG00000041949.6, intron 1 of 13) protein_coding-intron (ENSMUSG00000041949.6, intron 1 of 17) 4463 ENSMUSG00000041949.6 ENSMUSG00000041949 ENSMUST00000211979 Tango6 protein_coding Interval_3345 chr1 57329680 57329890 + 0 NA Intergenic Intergenic -37384 ENSMUSG00000101129.1 ENSMUSG00000101129 ENSMUST00000188353 Gm5254 processed_pseudogene Interval_16660 chr10 66896836 66897836 + 0 NA Intergenic Intergenic -5724 ENSMUSG00000112267.1 ENSMUSG00000112267 ENSMUST00000217953 Gm47903 lincRNA Interval_59461 chr15 53316303 53317376 + 0 NA intron (ENSMUSG00000061731.9, intron 1 of 10) protein_coding-intron (ENSMUSG00000061731.9, intron 1 of 10) -67080 ENSMUSG00000087805.2 ENSMUSG00000087805 ENSMUST00000157180 Gm27926 snRNA Interval_137080 chr6 67217128 67220899 + 0 NA intron (ENSMUSG00000107799.1, intron 1 of 2) antisense-intron (ENSMUSG00000107799.1, intron 1 of 2) 3531 ENSMUSG00000108013.1 ENSMUSG00000108013 ENSMUST00000203382 Gm44052 processed_pseudogene Interval_169557 chr9 99113316 99113880 + 0 NA intron (ENSMUSG00000032462.14, intron 2 of 23) protein_coding-intron (ENSMUSG00000032462.14, intron 2 of 23) 26327 ENSMUSG00000032462.14 ENSMUSG00000032462 ENSMUST00000124723 Pik3cb protein_coding Interval_57767 chr15 19361637 19361996 + 0 NA intron (ENSMUSG00000114971.1, intron 3 of 3) lincRNA-intron (ENSMUSG00000114971.1, intron 3 of 3) 33606 ENSMUSG00000114971.1 ENSMUSG00000114971 ENSMUST00000228706 Gm49162 lincRNA Interval_154772 chr8 23248893 23250834 + 0 NA exon (ENSMUSG00000015341.17, exon 3 of 3) protein_coding-exon (ENSMUSG00000015341.17, exon 3 of 3) -6772 ENSMUSG00000110256.1 ENSMUSG00000110256 ENSMUST00000210217 Gm45412 TEC Interval_112834 chr4 45407863 45409579 + 0 NA promoter-TSS (ENSMUSG00000045973.18) protein_coding-promoter-TSS (ENSMUSG00000045973.18) -75 ENSMUSG00000045973.18 ENSMUSG00000045973 ENSMUST00000134714 Slc25a51 protein_coding Interval_143479 chr7 7187603 7188854 + 0 NA Intergenic Intergenic 16874 ENSMUSG00000034538.8 ENSMUSG00000034538 ENSMUST00000209387 Zfp418 protein_coding Interval_94785 chr2 94290647 94290943 + 0 NA Intergenic Intergenic -26187 ENSMUSG00000075020.6 ENSMUSG00000075020 ENSMUST00000134563 Mir670hg lincRNA Interval_58539 chr15 35922461 35922790 + 0 NA intron (ENSMUSG00000037646.10, intron 58 of 61) protein_coding-intron (ENSMUSG00000037646.10, intron 58 of 61) 14544 ENSMUSG00000014313.15 ENSMUSG00000014313 ENSMUST00000227231 Cox6c protein_coding Interval_110361 chr3 157410949 157411600 + 0 NA TTS (ENSMUSG00000104555.1) processed_pseudogene-TTS (ENSMUSG00000104555.1) 1257 ENSMUSG00000104555.1 ENSMUSG00000104555 ENSMUST00000197739 Gm5983 processed_pseudogene Interval_82410 chr18 73787753 73788112 + 0 NA intron (ENSMUSG00000024556.4, intron 11 of 15) protein_coding-intron (ENSMUSG00000024556.4, intron 11 of 15) 27517 ENSMUSG00000024556.4 ENSMUSG00000024556 ENSMUST00000235595 Me2 protein_coding Interval_51590 chr14 30558751 30559996 + 0 NA promoter-TSS (ENSMUSG00000021957.7) protein_coding-promoter-TSS (ENSMUSG00000021957.7) 1764 ENSMUSG00000021957.7 ENSMUSG00000021957 ENSMUST00000160406 Tkt protein_coding Interval_75847 chr17 71791036 71792562 + 0 NA TTS (ENSMUSG00000024059.10) protein_coding-TTS (ENSMUSG00000024059.10) -35037 ENSMUSG00000117075.1 ENSMUSG00000117075 ENSMUST00000233072 Gm49922 TEC Interval_109768 chr3 146768945 146770331 + 0 NA intron (ENSMUSG00000005034.15, intron 1 of 9) protein_coding-intron (ENSMUSG00000005034.15, intron 1 of 9) -5068 ENSMUSG00000005034.15 ENSMUSG00000005034 ENSMUST00000196344 Prkacb protein_coding Interval_166732 chr9 62319183 62319442 + 0 NA intron (ENSMUSG00000111193.1, intron 5 of 7) lincRNA-intron (ENSMUSG00000111193.1, intron 5 of 7) 20810 ENSMUSG00000111193.1 ENSMUSG00000111193 ENSMUST00000216565 Gm35288 lincRNA Interval_98342 chr2 151616701 151617241 + 0 NA intron (ENSMUSG00000027457.15, intron 2 of 4) protein_coding-intron (ENSMUSG00000027457.15, intron 2 of 5) 15590 ENSMUSG00000027457.15 ENSMUSG00000027457 ENSMUST00000133378 Snph protein_coding Interval_47689 chr13 91320427 91320733 + 0 NA Intergenic Intergenic 53714 ENSMUSG00000099340.1 ENSMUSG00000099340 ENSMUST00000188207 Gm29540 sense_intronic Interval_96821 chr2 128591996 128592908 + 0 NA intron (ENSMUSG00000074812.12, intron 2 of 4) protein_coding-intron (ENSMUSG00000074812.12, intron 2 of 10) -1735 ENSMUSG00000074812.12 ENSMUSG00000074812 ENSMUST00000178601 Spdye4c protein_coding Interval_140228 chr6 115687792 115688193 + 0 NA Intergenic Intergenic 12024 ENSMUSG00000107994.1 ENSMUSG00000107994 ENSMUST00000203121 D830050J10Rik bidirectional_promoter_lncRNA Interval_134387 chr6 28114449 28115174 + 0 NA intron (ENSMUSG00000024211.15, intron 2 of 5) protein_coding-intron (ENSMUSG00000024211.15, intron 1 of 9) 19574 ENSMUSG00000024211.15 ENSMUSG00000024211 ENSMUST00000202861 Grm8 protein_coding Interval_141739 chr6 134147596 134148309 + 0 NA intron (ENSMUSG00000030199.16, intron 2 of 4) protein_coding-intron (ENSMUSG00000030199.16, intron 2 of 7) 24055 ENSMUSG00000091438.1 ENSMUSG00000091438 ENSMUST00000164616 Gm17088 antisense Interval_26263 chr11 55502702 55504507 + 0 NA exon (ENSMUSG00000018583.5, exon 12 of 12) protein_coding-exon (ENSMUSG00000018583.5, exon 12 of 12) 2378 ENSMUSG00000098906.1 ENSMUSG00000098906 ENSMUST00000185156 Mir7652 miRNA Interval_129093 chr5 117363160 117364058 + 0 NA promoter-TSS (ENSMUSG00000029364.15) protein_coding-promoter-TSS (ENSMUSG00000029364.15) -12043 ENSMUSG00000029364.15 ENSMUSG00000029364 ENSMUST00000136895 Wsb2 protein_coding Interval_151585 chr7 124280487 124280861 + 0 NA intron (ENSMUSG00000085899.1, intron 1 of 2) protein_coding-intron (ENSMUSG00000078591.1, intron 1 of 1) 93956 ENSMUSG00000085899.1 ENSMUSG00000085899 ENSMUST00000151884 Gm15338 sense_intronic Interval_135194 chr6 37419110 37420083 + 0 NA intron (ENSMUSG00000038648.5, intron 1 of 11) protein_coding-intron (ENSMUSG00000038648.5, intron 1 of 11) -83061 ENSMUSG00000038648.5 ENSMUSG00000038648 ENSMUST00000128534 Creb3l2 protein_coding Interval_67759 chr16 56901142 56903044 + 0 NA intron (ENSMUSG00000084999.2, intron 2 of 2) antisense-intron (ENSMUSG00000084999.2, intron 2 of 2) 7960 ENSMUSG00000083467.1 ENSMUSG00000083467 ENSMUST00000122099 Gm15840 processed_pseudogene Interval_36610 chr12 51404333 51404828 + 0 NA intron (ENSMUSG00000020952.10, intron 10 of 13) protein_coding-intron (ENSMUSG00000020952.10, intron 10 of 24) 26999 ENSMUSG00000020952.10 ENSMUSG00000020952 ENSMUST00000218138 Scfd1 protein_coding Interval_74254 chr17 47744237 47745229 + 0 NA intron (ENSMUSG00000023990.18, intron 1 of 6) protein_coding-intron (ENSMUSG00000023990.18, intron 1 of 8) 17889 ENSMUSG00000023987.14 ENSMUSG00000023987 ENSMUST00000144955 Pgc protein_coding Interval_43902 chr13 37964885 37966042 + 0 NA Intergenic Intergenic 18447 ENSMUSG00000039087.17 ENSMUSG00000039087 ENSMUST00000162849 Rreb1 protein_coding Interval_129037 chr5 117018162 117019129 + 0 NA Intergenic Intergenic -40167 ENSMUSG00000107327.1 ENSMUSG00000107327 ENSMUST00000201054 Gm7478 processed_pseudogene Interval_2067 chr1 36221466 36222469 + 0 NA intron (ENSMUSG00000037470.14, intron 4 of 18) protein_coding-intron (ENSMUSG00000037470.14, intron 4 of 40) 22753 ENSMUSG00000037470.14 ENSMUSG00000037470 ENSMUST00000192159 Uggt1 protein_coding Interval_81295 chr18 57608020 57608242 + 0 NA intron (ENSMUSG00000058925.11, intron 5 of 5) protein_coding-intron (ENSMUSG00000058925.11, intron 5 of 6) 30454 ENSMUSG00000118322.1 ENSMUSG00000118322 ENSMUST00000236285 2210409D07Rik antisense Interval_119558 chr4 138363341 138363924 + 0 NA intron (ENSMUSG00000028755.3, intron 1 of 3) protein_coding-intron (ENSMUSG00000028755.3, intron 1 of 3) -19983 ENSMUSG00000028755.3 ENSMUSG00000028755 ENSMUST00000030535 Cda protein_coding Interval_32621 chr11 109225566 109226715 + 0 NA intron (ENSMUSG00000020599.13, intron 9 of 9) protein_coding-intron (ENSMUSG00000020599.13, intron 18 of 18) 20825 ENSMUSG00000020599.13 ENSMUSG00000020599 ENSMUST00000106704 Rgs9 protein_coding Interval_22916 chr11 17351802 17352764 + 0 NA Intergenic Intergenic -53864 ENSMUSG00000082797.3 ENSMUSG00000082797 ENSMUST00000117065 Gm12015 processed_pseudogene Interval_6235 chr1 103489248 103489490 + 0 NA Intergenic Intergenic 125383 ENSMUSG00000099469.1 ENSMUSG00000099469 ENSMUST00000190357 Gm29141 unprocessed_pseudogene Interval_33819 chr11 118728484 118728735 + 0 NA intron (ENSMUSG00000025576.17, intron 2 of 14) protein_coding-intron (ENSMUSG00000025576.17, intron 2 of 14) -62763 ENSMUSG00000085059.1 ENSMUSG00000085059 ENSMUST00000146016 Gm11750 lincRNA Interval_124682 chr5 53235651 53235818 + 0 NA Intergenic Intergenic -21807 ENSMUSG00000029189.10 ENSMUSG00000029189 ENSMUST00000199919 Sel1l3 protein_coding Interval_91057 chr2 34736468 34736839 + 0 NA intron (ENSMUSG00000026867.18, intron 1 of 3) protein_coding-intron (ENSMUSG00000026867.18, intron 1 of 25) -35554 ENSMUSG00000026867.18 ENSMUSG00000026867 ENSMUST00000142436 Gapvd1 protein_coding Interval_151920 chr7 127543670 127544010 + 0 NA intron (ENSMUSG00000053877.12, intron 22 of 30) protein_coding-intron (ENSMUSG00000053877.12, intron 21 of 29) 15966 ENSMUSG00000065259.1 ENSMUSG00000065259 ENSMUST00000083325 Snora30 snoRNA Interval_86083 chr19 36445254 36445487 + 0 NA exon (ENSMUSG00000024805.16, exon 2 of 2) protein_coding-exon (ENSMUSG00000024805.16, exon 2 of 2) 5787 ENSMUSG00000114235.1 ENSMUSG00000114235 ENSMUST00000224716 F530104D19Rik antisense Interval_2516 chr1 39910308 39910532 + 0 NA intron (ENSMUSG00000026074.15, intron 2 of 31) protein_coding-intron (ENSMUSG00000026074.15, intron 2 of 30) 9241 ENSMUSG00000026074.15 ENSMUSG00000026074 ENSMUST00000191657 Map4k4 protein_coding Interval_163714 chr9 24806213 24808128 + 0 NA Intergenic Intergenic 20175 ENSMUSG00000111507.1 ENSMUSG00000111507 ENSMUST00000214455 Amd-ps6 processed_pseudogene Interval_117237 chr4 120866059 120866753 + 0 NA intron (ENSMUSG00000032890.17, intron 1 of 7) protein_coding-intron (ENSMUSG00000032890.17, intron 1 of 7) -11463 ENSMUSG00000032890.17 ENSMUSG00000032890 ENSMUST00000171363 Rims3 protein_coding Interval_155170 chr8 27186211 27186754 + 0 NA Intergenic Intergenic -11841 ENSMUSG00000031488.14 ENSMUSG00000031488 ENSMUST00000211646 Rab11fip1 protein_coding Interval_43323 chr13 29168028 29168693 + 0 NA Intergenic Intergenic -37602 ENSMUSG00000082730.2 ENSMUSG00000082730 ENSMUST00000121672 Gm11363 processed_pseudogene Interval_114511 chr4 81743995 81745613 + 0 NA exon (ENSMUSG00000087540.1, exon 2 of 2) lincRNA-exon (ENSMUSG00000087540.1, exon 2 of 2) 1658 ENSMUSG00000087540.1 ENSMUSG00000087540 ENSMUST00000144875 Gm11412 lincRNA Interval_120826 chr4 150871109 150872634 + 0 NA Intergenic Intergenic 16798 ENSMUSG00000028967.10 ENSMUSG00000028967 ENSMUST00000030811 Errfi1 protein_coding Interval_111247 chr4 15944808 15945824 + 0 NA promoter-TSS (ENSMUSG00000028223.8) protein_coding-promoter-TSS (ENSMUSG00000028223.8) -827 ENSMUSG00000028223.8 ENSMUSG00000028223 ENSMUST00000154639 Decr1 protein_coding Interval_88705 chr2 9889023 9890113 + 0 NA promoter-TSS (ENSMUSG00000079602.2) protein_coding-promoter-TSS (ENSMUSG00000079602.2) -28 ENSMUSG00000079602.2 ENSMUSG00000079602 ENSMUST00000114915 9230102O04Rik protein_coding Interval_61413 chr15 81447856 81448904 + 0 NA exon (ENSMUSG00000022401.12, exon 8 of 10) protein_coding-exon (ENSMUSG00000022401.12, exon 8 of 10) -18415 ENSMUSG00000022400.9 ENSMUSG00000022400 ENSMUST00000229991 Rbx1 protein_coding Interval_23046 chr11 19330458 19331175 + 0 NA Intergenic Intergenic 30253 ENSMUSG00000081054.1 ENSMUSG00000081054 ENSMUST00000117768 Gm12025 processed_pseudogene Interval_137809 chr6 82696580 82697323 + 0 NA intron (ENSMUSG00000030042.15, intron 1 of 3) protein_coding-intron (ENSMUSG00000030042.15, intron 1 of 3) 8414 ENSMUSG00000030042.15 ENSMUSG00000030042 ENSMUST00000140281 Pole4 protein_coding Interval_16815 chr10 68344563 68346486 + 0 NA Intergenic Intergenic -24382 ENSMUSG00000112157.1 ENSMUSG00000112157 ENSMUST00000218225 4930545H06Rik lincRNA Interval_97634 chr2 141378696 141378941 + 0 NA intron (ENSMUSG00000068205.14, intron 5 of 16) protein_coding-intron (ENSMUSG00000068205.14, intron 5 of 17) -91827 ENSMUSG00000086450.1 ENSMUSG00000086450 ENSMUST00000151538 Macrod2os1 antisense Interval_37797 chr12 72032717 72033803 + 0 NA Intergenic Intergenic 15999 ENSMUSG00000114155.1 ENSMUSG00000114155 ENSMUST00000221336 Gm7986 processed_pseudogene Interval_8080 chr1 135599788 135601515 + 0 NA TTS (ENSMUSG00000054412.5) antisense-TTS (ENSMUSG00000054412.5) 15878 ENSMUSG00000054412.5 ENSMUSG00000054412 ENSMUST00000067468 Gm4793 antisense Interval_28301 chr11 75031230 75031689 + 0 NA intron (ENSMUSG00000038290.15, intron 1 of 4) protein_coding-intron (ENSMUSG00000038290.15, intron 10 of 18) 7889 ENSMUSG00000085765.1 ENSMUSG00000085765 ENSMUST00000155508 Gm12333 antisense Interval_10134 chr1 165995928 165996453 + 0 NA intron (ENSMUSG00000026565.18, intron 1 of 6) protein_coding-intron (ENSMUSG00000026565.18, intron 1 of 14) -6770 ENSMUSG00000097196.2 ENSMUSG00000097196 ENSMUST00000181378 Gm26665 lincRNA Interval_62069 chr15 86200708 86200992 + 0 NA Intergenic Intergenic 11807 ENSMUSG00000088071.1 ENSMUSG00000088071 ENSMUST00000157446 Gm22818 snRNA Interval_100032 chr2 166652586 166653019 + 0 NA intron (ENSMUSG00000039621.13, intron 1 of 2) protein_coding-intron (ENSMUSG00000039621.13, intron 1 of 39) 2340 ENSMUSG00000093063.1 ENSMUSG00000093063 ENSMUST00000175322 Gm23152 rRNA Interval_29527 chr11 84697464 84698057 + 0 NA Intergenic Intergenic 22672 ENSMUSG00000085044.1 ENSMUSG00000085044 ENSMUST00000150735 1700109G15Rik lincRNA Interval_114344 chr4 73925335 73925626 + 0 NA Intergenic Intergenic -4720 ENSMUSG00000093962.7 ENSMUSG00000093962 ENSMUST00000107312 Gm11756 protein_coding Interval_56126 chr14 106160290 106161124 + 0 NA Intergenic Intergenic 51271 ENSMUSG00000115501.1 ENSMUSG00000115501 ENSMUST00000226534 Gm48971 processed_pseudogene Interval_145484 chr7 35146201 35146729 + 0 NA Intergenic Intergenic -5016 ENSMUSG00000108575.1 ENSMUSG00000108575 ENSMUST00000206742 Gm35665 lincRNA Interval_147549 chr7 68230706 68231003 + 0 NA exon (ENSMUSG00000005533.10, exon 21 of 21) protein_coding-exon (ENSMUSG00000005533.10, exon 21 of 21) 19016 ENSMUSG00000005533.10 ENSMUSG00000005533 ENSMUST00000208871 Igf1r protein_coding Interval_73616 chr17 41216293 41217081 + 0 NA Intergenic Intergenic 115649 ENSMUSG00000117062.1 ENSMUSG00000117062 ENSMUST00000232966 Ldha-ps3 processed_pseudogene Interval_118801 chr4 133795465 133795675 + 0 NA Intergenic Intergenic 2149 ENSMUSG00000084555.1 ENSMUSG00000084555 ENSMUST00000122606 Gm25270 snRNA Interval_33573 chr11 117291682 117292935 + 0 NA intron (ENSMUSG00000059248.13, intron 2 of 10) protein_coding-intron (ENSMUSG00000059248.13, intron 2 of 10) -28871 ENSMUSG00000086050.1 ENSMUSG00000086050 ENSMUST00000123882 Gm16045 antisense Interval_143635 chr7 13465192 13465727 + 0 NA intron (ENSMUSG00000074378.5, intron 2 of 3) protein_coding-intron (ENSMUSG00000074378.5, intron 2 of 4) 14603 ENSMUSG00000074378.5 ENSMUSG00000074378 ENSMUST00000204715 Bsph1 protein_coding Interval_142100 chr6 137146967 137147320 + 0 NA promoter-TSS (ENSMUSG00000107567.1) TEC-promoter-TSS (ENSMUSG00000107567.1) -214 ENSMUSG00000107567.1 ENSMUSG00000107567 ENSMUST00000203679 4930480K02Rik TEC Interval_173370 chrX 85269385 85269961 + 0 NA exon (ENSMUSG00000035491.5, exon 2 of 2) protein_coding-exon (ENSMUSG00000035491.5, exon 2 of 2) 19994 ENSMUSG00000035491.5 ENSMUSG00000035491 ENSMUST00000048382 Fthl17a protein_coding Interval_148933 chr7 90156912 90157241 + 0 NA intron (ENSMUSG00000039361.11, intron 1 of 3) protein_coding-intron (ENSMUSG00000039361.11, intron 1 of 20) 11128 ENSMUSG00000109498.1 ENSMUSG00000109498 ENSMUST00000207029 Gm45222 TEC Interval_116175 chr4 108383148 108384001 + 0 NA promoter-TSS (ENSMUSG00000059816.5) protein_coding-promoter-TSS (ENSMUSG00000059816.5) -225 ENSMUSG00000059816.5 ENSMUSG00000059816 ENSMUST00000053157 Shisal2a protein_coding Interval_143501 chr7 10816765 10817134 + 0 NA intron (ENSMUSG00000110402.1, intron 4 of 6) unprocessed_pseudogene-intron (ENSMUSG00000110402.1, intron 4 of 6) 6169 ENSMUSG00000110402.1 ENSMUSG00000110402 ENSMUST00000210880 Gm7203 unprocessed_pseudogene Interval_147778 chr7 73516646 73517922 + 0 NA intron (ENSMUSG00000078671.11, intron 2 of 4) protein_coding-intron (ENSMUSG00000078671.11, intron 3 of 8) 11441 ENSMUSG00000108812.1 ENSMUSG00000108812 ENSMUST00000205707 C130083A15Rik TEC Interval_78075 chr18 7682110 7682653 + 0 NA Intergenic Intergenic 10345 ENSMUSG00000117542.1 ENSMUSG00000117542 ENSMUST00000234387 Gm18763 processed_pseudogene Interval_133904 chr6 14771788 14772078 + 0 NA Intergenic Intergenic -16659 ENSMUSG00000042717.5 ENSMUSG00000042717 ENSMUST00000045096 Ppp1r3a protein_coding Interval_73388 chr17 36929590 36930607 + 0 NA intron (ENSMUSG00000092239.1, intron 2 of 2) antisense-intron (ENSMUSG00000092239.1, intron 2 of 2) 6306 ENSMUSG00000092239.1 ENSMUSG00000092239 ENSMUST00000174380 1700031A10Rik antisense Interval_86481 chr19 40962596 40963159 + 0 NA intron (ENSMUSG00000061132.13, intron 4 of 16) protein_coding-intron (ENSMUSG00000061132.13, intron 4 of 16) 31658 ENSMUSG00000061132.13 ENSMUSG00000061132 ENSMUST00000134568 Blnk protein_coding Interval_112981 chr4 46614845 46615032 + 0 NA intron (ENSMUSG00000039813.14, intron 8 of 12) protein_coding-intron (ENSMUSG00000039813.14, intron 8 of 12) -13047 ENSMUSG00000028337.14 ENSMUSG00000028337 ENSMUST00000127304 Coro2a protein_coding Interval_153076 chr7 141206559 141207135 + 0 NA intron (ENSMUSG00000038637.15, intron 8 of 11) protein_coding-intron (ENSMUSG00000038637.15, intron 8 of 12) 7233 ENSMUSG00000025500.12 ENSMUSG00000025500 ENSMUST00000170841 Lmntd2 protein_coding Interval_114358 chr4 74257854 74260168 + 0 NA intron (ENSMUSG00000028397.13, intron 1 of 21) protein_coding-intron (ENSMUSG00000028397.13, intron 1 of 21) -3798 ENSMUSG00000028397.13 ENSMUSG00000028397 ENSMUST00000150439 Kdm4c protein_coding Interval_32255 chr11 106525010 106525413 + 0 NA intron (ENSMUSG00000040548.16, intron 6 of 10) protein_coding-intron (ENSMUSG00000040548.16, intron 7 of 11) 23966 ENSMUSG00000080540.2 ENSMUSG00000080540 ENSMUST00000116890 Gm22711 snoRNA Interval_109401 chr3 141831314 141831581 + 0 NA TTS (ENSMUSG00000059921.15) protein_coding-TTS (ENSMUSG00000059921.15) 100061 ENSMUSG00000052430.15 ENSMUSG00000052430 ENSMUST00000106230 Bmpr1b protein_coding Interval_14779 chr10 39775347 39775967 + 0 NA intron (ENSMUSG00000019841.15, intron 2 of 32) protein_coding-intron (ENSMUSG00000019841.15, intron 1 of 31) -22789 ENSMUSG00000081608.1 ENSMUSG00000081608 ENSMUST00000122161 Gm16210 processed_pseudogene Interval_140536 chr6 119374328 119375454 + 0 NA intron (ENSMUSG00000030168.13, intron 1 of 5) protein_coding-intron (ENSMUSG00000030168.13, intron 1 of 7) 42584 ENSMUSG00000030168.13 ENSMUSG00000030168 ENSMUST00000189710 Adipor2 protein_coding Interval_39568 chr12 90840733 90841730 + 0 NA intron (ENSMUSG00000097157.2, intron 4 of 5) lincRNA-intron (ENSMUSG00000097071.2, intron 4 of 4) 26034 ENSMUSG00000089439.1 ENSMUSG00000089439 ENSMUST00000158814 Gm23195 snoRNA Interval_155653 chr8 35676184 35677252 + 0 NA intron (ENSMUSG00000070056.6, intron 3 of 3) protein_coding-intron (ENSMUSG00000070056.6, intron 2 of 2) 43231 ENSMUSG00000110335.1 ENSMUSG00000110335 ENSMUST00000209585 1700015I17Rik lincRNA Interval_34396 chr12 3842717 3843786 + 0 NA intron (ENSMUSG00000020661.15, intron 2 of 22) protein_coding-intron (ENSMUSG00000020661.15, intron 2 of 22) 18993 ENSMUSG00000073242.4 ENSMUSG00000073242 ENSMUST00000144896 Dnmt3aos antisense Interval_79516 chr18 32649435 32649835 + 0 NA Intergenic Intergenic -27579 ENSMUSG00000087715.1 ENSMUSG00000087715 ENSMUST00000157090 Gm25826 snoRNA Interval_116829 chr4 117550002 117551075 + 0 NA exon (ENSMUSG00000033423.16, exon 1 of 9) protein_coding-exon (ENSMUSG00000033423.16, exon 1 of 9) -14220 ENSMUSG00000033423.16 ENSMUSG00000033423 ENSMUST00000134379 Eri3 protein_coding Interval_40482 chr12 105118321 105118939 + 0 NA Intergenic Intergenic -16566 ENSMUSG00000113051.1 ENSMUSG00000113051 ENSMUST00000222354 Gm47672 processed_pseudogene Interval_85900 chr19 32850579 32850883 + 0 NA Intergenic Intergenic 39506 ENSMUSG00000013663.7 ENSMUSG00000013663 ENSMUST00000154806 Pten protein_coding Interval_137240 chr6 70691634 70692053 + 0 NA Intergenic Intergenic 4897 ENSMUSG00000094478.1 ENSMUSG00000094478 ENSMUST00000103402 Igkv3-3 IG_V_gene Interval_94910 chr2 101652121 101653965 + 0 NA Intergenic Intergenic -3511 ENSMUSG00000027165.16 ENSMUSG00000027165 ENSMUST00000177171 B230118H07Rik protein_coding Interval_109957 chr3 152165099 152167626 + 0 NA promoter-TSS (ENSMUSG00000039131.15) protein_coding-promoter-TSS (ENSMUSG00000039131.15) 988 ENSMUSG00000097293.1 ENSMUSG00000097293 ENSMUST00000181854 D630002J18Rik TEC Interval_18680 chr10 89256864 89258128 + 0 NA promoter-TSS (ENSMUSG00000035189.17) protein_coding-promoter-TSS (ENSMUSG00000035189.17) 94 ENSMUSG00000035189.17 ENSMUSG00000035189 ENSMUST00000180843 Ano4 protein_coding Interval_102927 chr3 32858077 32858823 + 0 NA intron (ENSMUSG00000056900.13, intron 4 of 14) protein_coding-intron (ENSMUSG00000056900.13, intron 4 of 20) 22158 ENSMUSG00000081883.2 ENSMUSG00000081883 ENSMUST00000119937 Gm15574 processed_pseudogene Interval_10665 chr1 172540241 172540458 + 0 NA intron (ENSMUSG00000026546.16, intron 2 of 2) protein_coding-intron (ENSMUSG00000026546.16, intron 8 of 11) 17780 ENSMUSG00000085184.9 ENSMUSG00000085184 ENSMUST00000169111 4933439K11Rik processed_transcript Interval_152755 chr7 137246516 137246966 + 0 NA intron (ENSMUSG00000010476.14, intron 6 of 15) protein_coding-intron (ENSMUSG00000010476.14, intron 6 of 15) 12058 ENSMUSG00000109722.1 ENSMUSG00000109722 ENSMUST00000211070 Gm10578 antisense Interval_138230 chr6 86471467 86473426 + 0 NA exon (ENSMUSG00000085589.7, exon 3 of 3) antisense-exon (ENSMUSG00000085589.7, exon 3 of 3) 8384 ENSMUSG00000085589.7 ENSMUSG00000085589 ENSMUST00000154066 A430078I02Rik antisense Interval_82858 chr18 77556730 77557737 + 0 NA intron (ENSMUSG00000025427.15, intron 1 of 4) protein_coding-intron (ENSMUSG00000025427.15, intron 1 of 7) 43793 ENSMUSG00000117855.1 ENSMUSG00000117855 ENSMUST00000236419 Gm50197 processed_pseudogene Interval_43355 chr13 29609765 29611381 + 0 NA intron (ENSMUSG00000006191.17, intron 9 of 10) protein_coding-intron (ENSMUSG00000006191.17, intron 9 of 15) -93119 ENSMUSG00000006191.17 ENSMUSG00000006191 ENSMUST00000129231 Cdkal1 protein_coding Interval_165890 chr9 54304221 54304455 + 0 NA intron (ENSMUSG00000046167.5, intron 1 of 9) protein_coding-intron (ENSMUSG00000046167.5, intron 1 of 9) -2768 ENSMUSG00000074343.3 ENSMUSG00000074343 ENSMUST00000149237 Gldnos antisense Interval_108553 chr3 128636533 128637575 + 0 NA intron (ENSMUSG00000106245.1, intron 2 of 4) lincRNA-intron (ENSMUSG00000106245.1, intron 2 of 4) 26067 ENSMUSG00000106245.1 ENSMUSG00000106245 ENSMUST00000199042 Gm43824 lincRNA Interval_98943 chr2 156233797 156234986 + 0 NA intron (ENSMUSG00000038116.16, intron 1 of 1) protein_coding-intron (ENSMUSG00000038116.16, intron 2 of 17) 11511 ENSMUSG00000038116.16 ENSMUSG00000038116 ENSMUST00000122814 Phf20 protein_coding Interval_103278 chr3 37765950 37766818 + 0 NA intron (ENSMUSG00000106441.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000106441.1, intron 1 of 1) 5347 ENSMUSG00000106441.1 ENSMUSG00000106441 ENSMUST00000196670 Gm42921 lincRNA Interval_62998 chr15 98579610 98580644 + 0 NA intron (ENSMUSG00000022993.7, intron 1 of 3) protein_coding-intron (ENSMUSG00000022993.7, intron 1 of 3) 9123 ENSMUSG00000022993.7 ENSMUSG00000022993 ENSMUST00000023728 4930415O20Rik protein_coding Interval_172118 chrX 7733219 7734260 + 0 NA exon (ENSMUSG00000031150.13, exon 10 of 10) protein_coding-exon (ENSMUSG00000031150.13, exon 10 of 10) 165 ENSMUSG00000031150.13 ENSMUSG00000031150 ENSMUST00000139499 Ccdc120 protein_coding Interval_88702 chr2 9874381 9875042 + 0 NA TTS (ENSMUSG00000015619.10) protein_coding-TTS (ENSMUSG00000015619.10) 688 ENSMUSG00000015619.10 ENSMUSG00000015619 ENSMUST00000142305 Gata3 protein_coding Interval_17011 chr10 70411500 70411726 + 0 NA TTS (ENSMUSG00000112884.1) lincRNA-TTS (ENSMUSG00000112884.1) 3968 ENSMUSG00000112884.1 ENSMUSG00000112884 ENSMUST00000219437 Gm47946 lincRNA Interval_155534 chr8 34146201 34147276 + 0 NA exon (ENSMUSG00000031513.8, exon 1 of 4) protein_coding-exon (ENSMUSG00000031513.8, exon 1 of 4) 295 ENSMUSG00000031513.8 ENSMUSG00000031513 ENSMUST00000033910 Leprotl1 protein_coding Interval_33788 chr11 118507527 118508408 + 0 NA promoter-TSS (ENSMUSG00000025576.17) protein_coding-promoter-TSS (ENSMUSG00000025576.17) -614 ENSMUSG00000025576.17 ENSMUSG00000025576 ENSMUST00000134774 Rbfox3 protein_coding Interval_173439 chrX 93672265 93673726 + 0 NA intron (ENSMUSG00000035246.16, intron 1 of 7) protein_coding-intron (ENSMUSG00000035246.16, intron 1 of 7) 34381 ENSMUSG00000087255.2 ENSMUSG00000087255 ENSMUST00000121255 Gm6985 processed_pseudogene Interval_17030 chr10 70640166 70640679 + 0 NA intron (ENSMUSG00000037747.9, intron 1 of 5) protein_coding-intron (ENSMUSG00000037747.9, intron 1 of 3) -41132 ENSMUSG00000037747.9 ENSMUSG00000037747 ENSMUST00000160127 Phyhipl protein_coding Interval_35170 chr12 17749914 17750286 + 0 NA intron (ENSMUSG00000071379.2, intron 1 of 4) protein_coding-intron (ENSMUSG00000071379.2, intron 1 of 3) 21874 ENSMUSG00000071379.2 ENSMUSG00000071379 ENSMUST00000222944 Hpcal1 protein_coding Interval_82549 chr18 75076405 75076695 + 0 NA intron (ENSMUSG00000035765.10, intron 6 of 8) protein_coding-intron (ENSMUSG00000035765.10, intron 6 of 16) -48875 ENSMUSG00000035765.10 ENSMUSG00000035765 ENSMUST00000236840 Dym protein_coding Interval_43574 chr13 33726483 33727187 + 0 NA Intergenic Intergenic 3014 ENSMUSG00000097190.1 ENSMUSG00000097190 ENSMUST00000181421 Gm11394 unprocessed_pseudogene Interval_151107 chr7 118581900 118582185 + 0 NA intron (ENSMUSG00000042246.5, intron 1 of 2) protein_coding-intron (ENSMUSG00000042246.5, intron 1 of 15) 2644 ENSMUSG00000042246.5 ENSMUSG00000042246 ENSMUST00000139693 Tmc7 protein_coding Interval_99192 chr2 157927532 157928583 + 0 NA intron (ENSMUSG00000037843.6, intron 1 of 3) protein_coding-intron (ENSMUSG00000037843.6, intron 1 of 3) 13404 ENSMUSG00000037843.6 ENSMUSG00000037843 ENSMUST00000109523 Vstm2l protein_coding Interval_144886 chr7 28758320 28760074 + 0 NA TTS (ENSMUSG00000096257.2) protein_coding-TTS (ENSMUSG00000096257.2) 3023 ENSMUSG00000096257.2 ENSMUSG00000096257 ENSMUST00000178767 Ccer2 protein_coding Interval_86512 chr19 41296164 41297381 + 0 NA intron (ENSMUSG00000025017.10, intron 11 of 16) protein_coding-intron (ENSMUSG00000025017.10, intron 11 of 16) -32792 ENSMUSG00000025016.11 ENSMUSG00000025016 ENSMUST00000237871 Tm9sf3 protein_coding Interval_26815 chr11 60799955 60800879 + 0 NA intron (ENSMUSG00000020534.14, intron 4 of 9) protein_coding-intron (ENSMUSG00000020534.14, intron 5 of 11) -4161 ENSMUSG00000088956.1 ENSMUSG00000088956 ENSMUST00000158331 Gm24945 snoRNA Interval_88460 chr2 5314602 5314832 + 0 NA intron (ENSMUSG00000039145.16, intron 6 of 10) protein_coding-intron (ENSMUSG00000039145.16, intron 6 of 10) 31067 ENSMUSG00000080820.1 ENSMUSG00000080820 ENSMUST00000117204 Gm13197 processed_pseudogene Interval_122815 chr5 25712870 25713710 + 0 NA Intergenic Intergenic 3064 ENSMUSG00000104549.1 ENSMUSG00000104549 ENSMUST00000198670 Gm43142 processed_pseudogene Interval_164063 chr9 31243448 31243806 + 0 NA Intergenic Intergenic -31194 ENSMUSG00000091003.2 ENSMUSG00000091003 ENSMUST00000164658 Gm7244 processed_pseudogene Interval_55723 chr14 99315113 99316561 + 0 NA TTS (ENSMUSG00000005148.8) protein_coding-TTS (ENSMUSG00000005148.8) 16683 ENSMUSG00000005148.8 ENSMUSG00000005148 ENSMUST00000226784 Klf5 protein_coding Interval_24206 chr11 31410832 31411180 + 0 NA Intergenic Intergenic -40959 ENSMUSG00000020303.2 ENSMUSG00000020303 ENSMUST00000134199 Stc2 protein_coding Interval_101388 chr2 180977476 180977722 + 0 NA TTS (ENSMUSG00000027575.19) protein_coding-TTS (ENSMUSG00000027575.19) -6325 ENSMUSG00000070461.3 ENSMUSG00000070461 ENSMUST00000094214 9230112E08Rik sense_overlapping Interval_46319 chr13 63918387 63919172 + 0 NA Intergenic Intergenic 27742 ENSMUSG00000113340.1 ENSMUSG00000113340 ENSMUST00000220900 Gm7695 processed_pseudogene Interval_122043 chr5 14514611 14515741 + 0 NA exon (ENSMUSG00000061601.15, exon 1 of 25) protein_coding-exon (ENSMUSG00000061601.15, exon 1 of 25) 24676 ENSMUSG00000097976.1 ENSMUSG00000097976 ENSMUST00000182496 Gm26918 antisense Interval_12983 chr10 8885743 8886704 + 0 NA promoter-TSS (ENSMUSG00000015305.6) protein_coding-promoter-TSS (ENSMUSG00000015305.6) -171 ENSMUSG00000015305.6 ENSMUSG00000015305 ENSMUST00000213032 Sash1 protein_coding Interval_30167 chr11 90038216 90038414 + 0 NA Intergenic Intergenic 7967 ENSMUSG00000069763.3 ENSMUSG00000069763 ENSMUST00000092788 Tmem100 protein_coding Interval_86441 chr19 40544835 40545578 + 0 NA Intergenic Intergenic 15852 ENSMUSG00000096592.1 ENSMUSG00000096592 ENSMUST00000120920 Gm15801 processed_pseudogene Interval_117394 chr4 123432429 123432801 + 0 NA exon (ENSMUSG00000028649.21, exon 52 of 93) protein_coding-exon (ENSMUSG00000028649.21, exon 52 of 93) -3002 ENSMUSG00000081528.1 ENSMUSG00000081528 ENSMUST00000121747 Gm12924 processed_pseudogene Interval_172002 chr9 123388411 123388701 + 0 NA intron (ENSMUSG00000035202.8, intron 3 of 20) protein_coding-intron (ENSMUSG00000035202.8, intron 3 of 20) 21602 ENSMUSG00000035202.8 ENSMUSG00000035202 ENSMUST00000215087 Lars2 protein_coding Interval_160123 chr8 106599225 106600074 + 0 NA Intergenic Intergenic -3730 ENSMUSG00000000303.12 ENSMUSG00000000303 ENSMUST00000136580 Cdh1 protein_coding Interval_87760 chr19 55700317 55701362 + 0 NA Intergenic Intergenic -41425 ENSMUSG00000024985.20 ENSMUSG00000024985 ENSMUST00000148666 Tcf7l2 protein_coding Interval_51792 chr14 32220429 32220796 + 0 NA intron (ENSMUSG00000021911.16, intron 4 of 14) protein_coding-intron (ENSMUSG00000021911.16, intron 7 of 17) -10234 ENSMUSG00000115833.1 ENSMUSG00000115833 ENSMUST00000228947 Gm49196 processed_pseudogene Interval_82355 chr18 72348591 72349600 + 0 NA intron (ENSMUSG00000060534.16, intron 1 of 1) protein_coding-intron (ENSMUSG00000060534.16, intron 1 of 28) 1946 ENSMUSG00000060534.16 ENSMUSG00000060534 ENSMUST00000126030 Dcc protein_coding Interval_8380 chr1 138549957 138550969 + 0 NA TTS (ENSMUSG00000099510.2) antisense-TTS (ENSMUSG00000099510.2) 4245 ENSMUSG00000102651.1 ENSMUSG00000102651 ENSMUST00000194804 Gm37080 TEC Interval_112747 chr4 44577225 44577523 + 0 NA intron (ENSMUSG00000014030.15, intron 6 of 8) protein_coding-intron (ENSMUSG00000014030.15, intron 6 of 8) 30194 ENSMUSG00000092761.1 ENSMUSG00000092761 ENSMUST00000175020 Mir5120 miRNA Interval_158358 chr8 82773390 82774637 + 0 NA intron (ENSMUSG00000031711.7, intron 1 of 7) protein_coding-intron (ENSMUSG00000031711.7, intron 1 of 9) 101 ENSMUSG00000031711.7 ENSMUSG00000031711 ENSMUST00000210958 Zfp330 protein_coding Interval_145589 chr7 35753856 35754986 + 0 NA promoter-TSS (ENSMUSG00000043671.14) protein_coding-promoter-TSS (ENSMUSG00000043671.14) 24747 ENSMUSG00000044452.10 ENSMUSG00000044452 ENSMUST00000206003 Zfp507 protein_coding Interval_122650 chr5 24451468 24453180 + 0 NA promoter-TSS (ENSMUSG00000104190.1) TEC-promoter-TSS (ENSMUSG00000104190.1) 117 ENSMUSG00000023353.14 ENSMUSG00000023353 ENSMUST00000199250 Agap3 protein_coding Interval_67343 chr16 46697954 46698290 + 0 NA Intergenic Intergenic 160287 ENSMUSG00000116915.1 ENSMUSG00000116915 ENSMUST00000231611 Gm17900 processed_pseudogene Interval_84339 chr19 10215847 10216448 + 0 NA exon (ENSMUSG00000036098.15, exon 17 of 27) protein_coding-exon (ENSMUSG00000036098.15, exon 17 of 27) 10114 ENSMUSG00000036372.14 ENSMUSG00000036372 ENSMUST00000166412 Tmem258 protein_coding Interval_43255 chr13 27587988 27588708 + 0 NA Intergenic Intergenic -6177 ENSMUSG00000019756.10 ENSMUSG00000019756 ENSMUST00000095926 Prl8a1 protein_coding Interval_156807 chr8 60640175 60640401 + 0 NA intron (ENSMUSG00000031647.10, intron 1 of 1) protein_coding-intron (ENSMUSG00000031647.10, intron 1 of 2) -7557 ENSMUSG00000109930.1 ENSMUSG00000109930 ENSMUST00000210674 Gm34730 bidirectional_promoter_lncRNA Interval_82094 chr18 67678954 67679438 + 0 NA intron (ENSMUSG00000024539.17, intron 5 of 6) protein_coding-intron (ENSMUSG00000024539.17, intron 6 of 9) 11028 ENSMUSG00000024539.17 ENSMUSG00000024539 ENSMUST00000128169 Ptpn2 protein_coding Interval_129872 chr5 122849597 122850954 + 0 NA exon (ENSMUSG00000029474.7, exon 1 of 6) protein_coding-exon (ENSMUSG00000029474.7, exon 1 of 6) 118 ENSMUSG00000029474.7 ENSMUSG00000029474 ENSMUST00000198602 Rnf34 protein_coding Interval_28111 chr11 72917006 72917751 + 0 NA intron (ENSMUSG00000055670.14, intron 51 of 54) protein_coding-intron (ENSMUSG00000055670.14, intron 51 of 54) 35586 ENSMUSG00000065298.1 ENSMUSG00000065298 ENSMUST00000083364 Gm26121 snRNA Interval_93488 chr2 73491696 73492350 + 0 NA intron (ENSMUSG00000075284.10, intron 1 of 2) protein_coding-intron (ENSMUSG00000075284.10, intron 1 of 7) 32318 ENSMUSG00000086069.1 ENSMUSG00000086069 ENSMUST00000145170 Gm13708 lincRNA Interval_161345 chr8 119872966 119873396 + 0 NA intron (ENSMUSG00000031828.9, intron 3 of 4) protein_coding-intron (ENSMUSG00000031828.9, intron 3 of 4) 10912 ENSMUSG00000031828.9 ENSMUSG00000031828 ENSMUST00000034287 Klhl36 protein_coding Interval_109272 chr3 138535848 138536666 + 0 NA intron (ENSMUSG00000028156.12, intron 2 of 7) protein_coding-intron (ENSMUSG00000028156.12, intron 2 of 7) 8972 ENSMUSG00000028156.12 ENSMUSG00000028156 ENSMUST00000198252 Eif4e protein_coding Interval_71066 chr17 17611067 17613170 + 0 NA intron (ENSMUSG00000023845.7, intron 1 of 11) protein_coding-intron (ENSMUSG00000023845.7, intron 1 of 17) 12523 ENSMUSG00000023845.7 ENSMUSG00000023845 ENSMUST00000231666 Lnpep protein_coding Interval_51888 chr14 33361890 33362090 + 0 NA promoter-TSS (ENSMUSG00000063506.14) protein_coding-promoter-TSS (ENSMUSG00000063506.14) 8153 ENSMUSG00000087639.1 ENSMUSG00000087639 ENSMUST00000137359 Gm15512 antisense Interval_142477 chr6 142722683 142723550 + 0 NA Intergenic Intergenic -20843 ENSMUSG00000030249.15 ENSMUSG00000030249 ENSMUST00000204870 Abcc9 protein_coding Interval_123015 chr5 28457940 28460173 + 0 NA intron (ENSMUSG00000002633.4, intron 2 of 2) protein_coding-intron (ENSMUSG00000002633.4, intron 2 of 2) -7928 ENSMUSG00000097726.7 ENSMUSG00000097726 ENSMUST00000181202 9530036O11Rik antisense Interval_86947 chr19 45142405 45144530 + 0 NA Intergenic Intergenic -8002 ENSMUSG00000025215.10 ENSMUSG00000025215 ENSMUST00000174617 Tlx1 protein_coding Interval_43616 chr13 34129426 34132314 + 0 NA promoter-TSS (ENSMUSG00000045136.6) protein_coding-promoter-TSS (ENSMUSG00000045136.6) -404 ENSMUSG00000045136.6 ENSMUSG00000045136 ENSMUST00000220744 Tubb2b protein_coding Interval_142582 chr6 143535353 143536079 + 0 NA promoter-TSS (ENSMUSG00000084971.1) lincRNA-promoter-TSS (ENSMUSG00000084971.1) -208 ENSMUSG00000084971.1 ENSMUSG00000084971 ENSMUST00000132321 4930579D09Rik lincRNA Interval_66886 chr16 38346628 38347501 + 0 NA promoter-TSS (ENSMUSG00000046516.10) protein_coding-promoter-TSS (ENSMUSG00000046516.10) 24 ENSMUSG00000095464.1 ENSMUSG00000095464 ENSMUST00000119704 Gm21987 protein_coding Interval_55545 chr14 91475862 91476099 + 0 NA Intergenic Intergenic 171859 ENSMUSG00000115368.1 ENSMUSG00000115368 ENSMUST00000227213 Gm48942 lincRNA Interval_157211 chr8 67961672 67961879 + 0 NA intron (ENSMUSG00000030465.19, intron 4 of 16) protein_coding-intron (ENSMUSG00000030465.19, intron 2 of 14) 5006 ENSMUSG00000087266.2 ENSMUSG00000087266 ENSMUST00000127631 Gm15991 antisense Interval_125349 chr5 66355907 66356247 + 0 NA promoter-TSS (ENSMUSG00000106910.1) processed_pseudogene-promoter-TSS (ENSMUSG00000106910.1) -841 ENSMUSG00000106910.1 ENSMUSG00000106910 ENSMUST00000202238 Gm16273 processed_pseudogene Interval_167262 chr9 66851765 66852922 + 0 NA intron (ENSMUSG00000036943.9, intron 5 of 7) protein_coding-intron (ENSMUSG00000036943.9, intron 5 of 7) -17617 ENSMUSG00000053040.13 ENSMUSG00000053040 ENSMUST00000057261 Aph1c protein_coding Interval_4545 chr1 74915865 74916892 + 0 NA intron (ENSMUSG00000047021.14, intron 19 of 32) protein_coding-intron (ENSMUSG00000047021.14, intron 19 of 32) 14007 ENSMUSG00000089653.1 ENSMUSG00000089653 ENSMUST00000160540 Gm15841 antisense Interval_48166 chr13 96914944 96915542 + 0 NA Intergenic Intergenic -9446 ENSMUSG00000091387.2 ENSMUSG00000091387 ENSMUST00000171324 Gcnt4 protein_coding Interval_19018 chr10 93818552 93821274 + 0 NA Intergenic Intergenic 12615 ENSMUSG00000096598.1 ENSMUSG00000096598 ENSMUST00000178842 Gm26239 snRNA Interval_69441 chr16 93465547 93465795 + 0 NA Intergenic Intergenic -6866 ENSMUSG00000099968.7 ENSMUSG00000099968 ENSMUST00000231859 1700029J03Rik lincRNA Interval_51934 chr14 34075860 34076106 + 0 NA exon (ENSMUSG00000047441.4, exon 17 of 17) protein_coding-exon (ENSMUSG00000047441.4, exon 17 of 17) -8770 ENSMUSG00000115489.1 ENSMUSG00000115489 ENSMUST00000227780 Gm49129 processed_pseudogene Interval_85528 chr19 28113247 28113967 + 0 NA Intergenic Intergenic 24751 ENSMUSG00000101084.1 ENSMUSG00000101084 ENSMUST00000186880 Gm28228 lincRNA Interval_77503 chr17 90390011 90391774 + 0 NA intron (ENSMUSG00000024109.18, intron 3 of 3) protein_coding-intron (ENSMUSG00000024109.18, intron 15 of 20) -63997 ENSMUSG00000073367.5 ENSMUSG00000073367 ENSMUST00000097270 Gm10493 processed_pseudogene Interval_16361 chr10 62485925 62487366 + 0 NA promoter-TSS (ENSMUSG00000020078.16) protein_coding-promoter-TSS (ENSMUSG00000020078.16) 87 ENSMUSG00000020078.16 ENSMUSG00000020078 ENSMUST00000217868 Vps26a protein_coding Interval_111165 chr4 13719517 13719707 + 0 NA Intergenic Intergenic -31685 ENSMUSG00000006586.15 ENSMUSG00000006586 ENSMUST00000139736 Runx1t1 protein_coding Interval_159135 chr8 90940330 90940719 + 0 NA intron (ENSMUSG00000056608.14, intron 2 of 4) protein_coding-intron (ENSMUSG00000056608.14, intron 3 of 39) -32108 ENSMUSG00000074171.2 ENSMUSG00000074171 ENSMUST00000098517 Gm6658 TEC Interval_35000 chr12 16563186 16563647 + 0 NA promoter-TSS (ENSMUSG00000020593.16) protein_coding-promoter-TSS (ENSMUSG00000020593.16) 47550 ENSMUSG00000020593.16 ENSMUSG00000020593 ENSMUST00000221146 Lpin1 protein_coding Interval_37707 chr12 71280286 71280549 + 0 NA Intergenic Intergenic -10060 ENSMUSG00000113572.1 ENSMUSG00000113572 ENSMUST00000221823 Gm7959 processed_pseudogene Interval_101428 chr2 181319324 181320763 + 0 NA promoter-TSS (ENSMUSG00000038685.18) protein_coding-promoter-TSS (ENSMUSG00000038685.18) -5543 ENSMUSG00000027581.12 ENSMUSG00000027581 ENSMUST00000103045 Stmn3 protein_coding Interval_46508 chr13 66714823 66716389 + 0 NA Intergenic Intergenic 25707 ENSMUSG00000114839.1 ENSMUSG00000114839 ENSMUST00000225542 Gm40989 processed_pseudogene Interval_138189 chr6 86063794 86065171 + 0 NA intron (ENSMUSG00000030000.10, intron 1 of 5) protein_coding-intron (ENSMUSG00000030000.10, intron 1 of 12) -13575 ENSMUSG00000030000.10 ENSMUSG00000030000 ENSMUST00000203279 Add2 protein_coding Interval_141286 chr6 126875647 126875879 + 0 NA TTS (ENSMUSG00000030345.16) protein_coding-TTS (ENSMUSG00000030345.16) 9621 ENSMUSG00000030345.16 ENSMUSG00000030345 ENSMUST00000032495 Dyrk4 protein_coding Interval_80712 chr18 46525101 46526569 + 0 NA exon (ENSMUSG00000033319.5, exon 1 of 3) protein_coding-exon (ENSMUSG00000033319.5, exon 1 of 3) 136 ENSMUSG00000033319.5 ENSMUSG00000033319 ENSMUST00000036226 Fem1c protein_coding Interval_105314 chr3 84826162 84826646 + 0 NA intron (ENSMUSG00000028086.15, intron 1 of 2) protein_coding-intron (ENSMUSG00000028086.15, intron 1 of 13) 10638 ENSMUSG00000028086.15 ENSMUSG00000028086 ENSMUST00000029727 Fbxw7 protein_coding Interval_61580 chr15 82634308 82634582 + 0 NA intron (ENSMUSG00000116130.1, intron 1 of 1) antisense-intron (ENSMUSG00000116130.1, intron 1 of 1) 7556 ENSMUSG00000098867.1 ENSMUSG00000098867 ENSMUST00000183569 Gm27463 miRNA Interval_98419 chr2 152236504 152236917 + 0 NA intron (ENSMUSG00000074698.10, intron 1 of 3) protein_coding-intron (ENSMUSG00000074698.10, intron 1 of 12) 9797 ENSMUSG00000074698.10 ENSMUSG00000074698 ENSMUST00000141597 Csnk2a1 protein_coding Interval_126222 chr5 82985653 82985880 + 0 NA Intergenic Intergenic 55238 ENSMUSG00000106606.1 ENSMUSG00000106606 ENSMUST00000199513 Gm43217 processed_pseudogene Interval_20161 chr10 115341640 115343360 + 0 NA exon (ENSMUSG00000069520.6, exon 7 of 7) protein_coding-exon (ENSMUSG00000069520.6, exon 7 of 7) 19993 ENSMUSG00000069520.6 ENSMUSG00000069520 ENSMUST00000219597 Tmem19 protein_coding Interval_26989 chr11 62207515 62208130 + 0 NA intron (ENSMUSG00000042331.13, intron 13 of 14) protein_coding-intron (ENSMUSG00000042331.13, intron 11 of 12) -41162 ENSMUSG00000018500.2 ENSMUSG00000018500 ENSMUST00000018644 Adora2b protein_coding Interval_65124 chr16 19959408 19959605 + 0 NA intron (ENSMUSG00000043008.9, intron 1 of 1) protein_coding-intron (ENSMUSG00000043008.9, intron 2 of 6) 6813 ENSMUSG00000043008.9 ENSMUSG00000043008 ENSMUST00000165530 Klhl6 protein_coding Interval_84575 chr19 12913083 12913277 + 0 NA Intergenic Intergenic 7860 ENSMUSG00000112693.1 ENSMUSG00000112693 ENSMUST00000218013 Gm5512 transcribed_unprocessed_pseudogene Interval_25271 chr11 46030773 46032155 + 0 NA Intergenic Intergenic -4976 ENSMUSG00000082870.1 ENSMUSG00000082870 ENSMUST00000117047 Gm12165 processed_pseudogene Interval_17903 chr10 80701627 80703014 + 0 NA promoter-TSS (ENSMUSG00000003348.10) protein_coding-promoter-TSS (ENSMUSG00000003348.10) 136 ENSMUSG00000055862.7 ENSMUSG00000055862 ENSMUST00000219422 Izumo4 protein_coding Interval_40817 chr12 108611984 108612281 + 0 NA intron (ENSMUSG00000021262.15, intron 1 of 12) protein_coding-intron (ENSMUSG00000021262.15, intron 1 of 13) -46488 ENSMUSG00000065436.1 ENSMUSG00000065436 ENSMUST00000083502 Mir342 miRNA Interval_116315 chr4 109683282 109683888 + 0 NA TTS (ENSMUSG00000010517.7) protein_coding-TTS (ENSMUSG00000010517.7) -16396 ENSMUSG00000028551.14 ENSMUSG00000028551 ENSMUST00000097921 Cdkn2c protein_coding Interval_77884 chr18 5017613 5018008 + 0 NA intron (ENSMUSG00000024236.18, intron 1 of 37) protein_coding-intron (ENSMUSG00000024236.18, intron 1 of 37) -17356 ENSMUSG00000024236.18 ENSMUSG00000024236 ENSMUST00000129543 Svil protein_coding Interval_100674 chr2 171230653 171232337 + 0 NA intron (ENSMUSG00000084829.7, intron 1 of 3) lincRNA-intron (ENSMUSG00000084829.7, intron 1 of 3) -2514 ENSMUSG00000086613.1 ENSMUSG00000086613 ENSMUST00000129075 1700007M16Rik lincRNA Interval_136680 chr6 57580884 57581506 + 0 NA exon (ENSMUSG00000029798.11, exon 1 of 23) protein_coding-exon (ENSMUSG00000029798.11, exon 1 of 23) 15402 ENSMUSG00000092903.2 ENSMUSG00000092903 ENSMUST00000175162 Gm27896 misc_RNA Interval_15613 chr10 52311758 52312318 + 0 NA intron (ENSMUSG00000019891.15, intron 6 of 9) protein_coding-intron (ENSMUSG00000019891.15, intron 7 of 10) 31619 ENSMUSG00000112550.1 ENSMUSG00000112550 ENSMUST00000218299 Gm6627 processed_pseudogene Interval_64045 chr16 6348278 6349790 + 0 NA promoter-TSS (ENSMUSG00000008658.16) protein_coding-promoter-TSS (ENSMUSG00000008658.16) 373449 ENSMUSG00000101481.1 ENSMUSG00000101481 ENSMUST00000190515 1700123O21Rik sense_intronic Interval_81845 chr18 65216124 65217044 + 0 NA exon (ENSMUSG00000024589.18, exon 30 of 30) protein_coding-exon (ENSMUSG00000024589.18, exon 30 of 30) -27703 ENSMUSG00000118017.1 ENSMUSG00000118017 ENSMUST00000235231 Gm29966 lincRNA Interval_91964 chr2 52059583 52059899 + 0 NA Intergenic Intergenic 21732 ENSMUSG00000053475.5 ENSMUSG00000053475 ENSMUST00000065927 Tnfaip6 protein_coding Interval_28243 chr11 74637673 74639172 + 0 NA exon (ENSMUSG00000069814.6, exon 4 of 4) protein_coding-exon (ENSMUSG00000069814.6, exon 4 of 4) -11118 ENSMUSG00000020741.17 ENSMUSG00000020741 ENSMUST00000128155 Cluh protein_coding Interval_12854 chr10 6694218 6694891 + 0 NA Intergenic Intergenic 67207 ENSMUSG00000078488.1 ENSMUSG00000078488 ENSMUST00000105596 Gm10945 protein_coding Interval_117934 chr4 127173433 127175198 + 0 NA intron (ENSMUSG00000042388.14, intron 1 of 11) protein_coding-intron (ENSMUSG00000042388.14, intron 1 of 11) -28991 ENSMUSG00000042388.14 ENSMUSG00000042388 ENSMUST00000137062 Dlgap3 protein_coding Interval_134163 chr6 22280082 22280453 + 0 NA Intergenic Intergenic -8594 ENSMUSG00000029671.15 ENSMUSG00000029671 ENSMUST00000176681 Wnt16 protein_coding Interval_16180 chr10 61261220 61261992 + 0 NA intron (ENSMUSG00000059901.12, intron 2 of 21) protein_coding-intron (ENSMUSG00000059901.12, intron 2 of 21) 11636 ENSMUSG00000059901.12 ENSMUSG00000059901 ENSMUST00000120336 Adamts14 protein_coding Interval_173082 chrX 71049801 71052801 + 0 NA intron (ENSMUSG00000059401.14, intron 1 of 4) protein_coding-intron (ENSMUSG00000059401.14, intron 1 of 6) 1061 ENSMUSG00000059401.14 ENSMUSG00000059401 ENSMUST00000082088 Mamld1 protein_coding Interval_128299 chr5 112391043 112392097 + 0 NA TTS (ENSMUSG00000029348.11) protein_coding-TTS (ENSMUSG00000029348.11) 2454 ENSMUSG00000029348.11 ENSMUSG00000029348 ENSMUST00000199095 Asphd2 protein_coding Interval_127758 chr5 107454657 107454987 + 0 NA intron (ENSMUSG00000111375.4, intron 3 of 8) protein_coding-intron (ENSMUSG00000111375.4, intron 3 of 8) 16825 ENSMUSG00000111375.4 ENSMUSG00000111375 ENSMUST00000133800 Btbd8 protein_coding Interval_105170 chr3 83116406 83116716 + 0 NA Intergenic Intergenic -11387 ENSMUSG00000102692.1 ENSMUSG00000102692 ENSMUST00000191829 Dchs2 protein_coding Interval_15698 chr10 53699917 53700155 + 0 NA promoter-TSS (ENSMUSG00000019856.14) protein_coding-promoter-TSS (ENSMUSG00000019856.14) -52338 ENSMUSG00000019856.14 ENSMUSG00000019856 ENSMUST00000170839 Fam184a protein_coding Interval_165031 chr9 44042883 44044790 + 0 NA promoter-TSS (ENSMUSG00000032011.5) protein_coding-promoter-TSS (ENSMUSG00000032011.5) -1836 ENSMUSG00000032011.5 ENSMUSG00000032011 ENSMUST00000213733 Thy1 protein_coding Interval_168830 chr9 87733102 87733351 + 0 NA Intergenic Intergenic -2729 ENSMUSG00000032419.8 ENSMUSG00000032419 ENSMUST00000186698 Tbx18 protein_coding Interval_142885 chr6 146674280 146674481 + 0 NA Intergenic Intergenic 17162 ENSMUSG00000085238.1 ENSMUSG00000085238 ENSMUST00000146754 4930479D17Rik lincRNA Interval_152255 chr7 130960091 130960320 + 0 NA intron (ENSMUSG00000006205.13, intron 1 of 8) protein_coding-intron (ENSMUSG00000006205.13, intron 1 of 8) 16716 ENSMUSG00000006205.13 ENSMUSG00000006205 ENSMUST00000150905 Htra1 protein_coding Interval_47277 chr13 80518547 80519375 + 0 NA Intergenic Intergenic 25952 ENSMUSG00000114528.1 ENSMUSG00000114528 ENSMUST00000223876 Gm46388 processed_pseudogene Interval_52204 chr14 40449247 40450356 + 0 NA TTS (ENSMUSG00000114280.1) processed_pseudogene-TTS (ENSMUSG00000114280.1) 684 ENSMUSG00000114280.1 ENSMUSG00000114280 ENSMUST00000225248 Gm2791 processed_pseudogene Interval_128051 chr5 110530002 110530238 + 0 NA Intergenic Intergenic 15176 ENSMUSG00000048215.14 ENSMUSG00000048215 ENSMUST00000129007 A630023P12Rik lincRNA Interval_42414 chr13 13373845 13374172 + 0 NA intron (ENSMUSG00000021306.11, intron 2 of 7) protein_coding-intron (ENSMUSG00000021306.11, intron 2 of 6) 19556 ENSMUSG00000021306.11 ENSMUSG00000021306 ENSMUST00000221498 Gpr137b protein_coding Interval_23360 chr11 21868526 21869223 + 0 NA intron (ENSMUSG00000020319.9, intron 15 of 17) protein_coding-intron (ENSMUSG00000020319.9, intron 15 of 17) 9076 ENSMUSG00000084004.1 ENSMUSG00000084004 ENSMUST00000117561 Gm12047 processed_pseudogene Interval_128401 chr5 113125856 113126366 + 0 NA intron (ENSMUSG00000051339.10, intron 6 of 12) protein_coding-intron (ENSMUSG00000051339.10, intron 1 of 7) -6647 ENSMUSG00000104576.1 ENSMUSG00000104576 ENSMUST00000197638 F830115B05Rik TEC Interval_726 chr1 10169749 10172037 + 0 NA intron (ENSMUSG00000067851.11, intron 21 of 37) protein_coding-intron (ENSMUSG00000067851.11, intron 21 of 37) 4354 ENSMUSG00000088153.1 ENSMUSG00000088153 ENSMUST00000157528 Gm26348 misc_RNA Interval_1546 chr1 25228376 25229236 + 0 NA promoter-TSS (ENSMUSG00000033569.17) protein_coding-promoter-TSS (ENSMUSG00000033569.17) 5076 ENSMUSG00000080849.1 ENSMUSG00000080849 ENSMUST00000119680 Gm15702 processed_pseudogene Interval_86070 chr19 36234986 36235596 + 0 NA intron (ENSMUSG00000117990.1, intron 1 of 2) processed_transcript-intron (ENSMUSG00000117990.1, intron 1 of 2) -16436 ENSMUSG00000118032.1 ENSMUSG00000118032 ENSMUST00000236788 Gm50147 lincRNA Interval_35374 chr12 21145075 21145280 + 0 NA intron (ENSMUSG00000052632.16, intron 1 of 27) protein_coding-intron (ENSMUSG00000052632.16, intron 1 of 26) 102146 ENSMUSG00000118655.1 ENSMUSG00000118655 ENSMUST00000172962 AC156032.1 processed_transcript Interval_77911 chr18 5402032 5402336 + 0 NA Intergenic Intergenic -31702 ENSMUSG00000117617.1 ENSMUSG00000117617 ENSMUST00000234572 Gm50065 lincRNA Interval_152291 chr7 131436995 131437553 + 0 NA intron (ENSMUSG00000030861.15, intron 3 of 6) protein_coding-intron (ENSMUSG00000030861.15, intron 7 of 10) -3197 ENSMUSG00000109399.1 ENSMUSG00000109399 ENSMUST00000208795 Gm44982 sense_intronic Interval_141330 chr6 127280134 127280812 + 0 NA Intergenic Intergenic 2036 ENSMUSG00000081113.1 ENSMUSG00000081113 ENSMUST00000121087 Gm7308 processed_pseudogene Interval_170639 chr9 109839137 109839711 + 0 NA intron (ENSMUSG00000032478.14, intron 2 of 5) protein_coding-intron (ENSMUSG00000032478.14, intron 3 of 6) 6377 ENSMUSG00000032478.14 ENSMUSG00000032478 ENSMUST00000196425 Nme6 protein_coding Interval_143146 chr7 3664830 3666051 + 0 NA promoter-TSS (ENSMUSG00000086032.1) antisense-promoter-TSS (ENSMUSG00000086032.1) 400 ENSMUSG00000078813.3 ENSMUSG00000078813 ENSMUST00000019878 Leng1 protein_coding Interval_21873 chr11 4879537 4880050 + 0 NA intron (ENSMUSG00000034285.15, intron 1 of 3) protein_coding-intron (ENSMUSG00000034285.15, intron 1 of 9) -3413 ENSMUSG00000034285.15 ENSMUSG00000034285 ENSMUST00000141269 Nipsnap1 protein_coding Interval_132289 chr5 143958957 143959261 + 0 NA promoter-TSS (ENSMUSG00000075569.10) protein_coding-promoter-TSS (ENSMUSG00000075569.10) -583 ENSMUSG00000075569.10 ENSMUSG00000075569 ENSMUST00000164604 Rsph10b protein_coding Interval_28540 chr11 76603708 76604010 + 0 NA intron (ENSMUSG00000017631.19, intron 1 of 22) protein_coding-intron (ENSMUSG00000017631.19, intron 1 of 3) 2540 ENSMUSG00000024205.7 ENSMUSG00000024205 ENSMUST00000136893 Rpl36-ps2 processed_pseudogene Interval_101507 chr3 3235515 3235819 + 0 NA Intergenic Intergenic 31360 ENSMUSG00000103028.1 ENSMUSG00000103028 ENSMUST00000195392 Gm8747 processed_pseudogene Interval_139639 chr6 104385307 104385663 + 0 NA Intergenic Intergenic 85359 ENSMUSG00000107074.1 ENSMUSG00000107074 ENSMUST00000200897 Gm18100 processed_pseudogene Interval_116282 chr4 109251272 109252194 + 0 NA intron (ENSMUSG00000028558.14, intron 3 of 3) protein_coding-intron (ENSMUSG00000028558.14, intron 7 of 7) 7151 ENSMUSG00000028558.14 ENSMUSG00000028558 ENSMUST00000141555 Calr4 protein_coding Interval_66073 chr16 31428526 31430203 + 0 NA promoter-TSS (ENSMUSG00000046598.15) protein_coding-promoter-TSS (ENSMUSG00000046598.15) 412 ENSMUSG00000086645.2 ENSMUSG00000086645 ENSMUST00000182690 Gm15743 antisense Interval_97990 chr2 146469869 146470188 + 0 NA intron (ENSMUSG00000037110.20, intron 3 of 41) protein_coding-intron (ENSMUSG00000037110.20, intron 3 of 15) 42316 ENSMUSG00000037110.20 ENSMUSG00000037110 ENSMUST00000124709 Ralgapa2 protein_coding Interval_166089 chr9 56534196 56535964 + 0 NA Intergenic Intergenic -4825 ENSMUSG00000110821.1 ENSMUSG00000110821 ENSMUST00000213911 Gm47176 lincRNA Interval_170253 chr9 106476604 106477705 + 0 NA promoter-TSS (ENSMUSG00000041506.15) protein_coding-promoter-TSS (ENSMUSG00000041506.15) -544 ENSMUSG00000023249.15 ENSMUSG00000023249 ENSMUST00000125850 Parp3 protein_coding Interval_132867 chr5 148398967 148400407 + 0 NA intron (ENSMUSG00000041313.14, intron 1 of 5) protein_coding-intron (ENSMUSG00000041313.14, intron 1 of 12) 104 ENSMUSG00000041313.14 ENSMUSG00000041313 ENSMUST00000201348 Slc7a1 protein_coding Interval_63004 chr15 98608693 98610675 + 0 NA intron (ENSMUSG00000022994.9, intron 1 of 1) protein_coding-intron (ENSMUSG00000022994.9, intron 1 of 1) -4858 ENSMUSG00000022994.9 ENSMUSG00000022994 ENSMUST00000226500 Adcy6 protein_coding Interval_101867 chr3 10284895 10285377 + 0 NA intron (ENSMUSG00000027530.15, intron 1 of 5) protein_coding-intron (ENSMUSG00000027530.15, intron 1 of 5) -19655 ENSMUSG00000104092.2 ENSMUSG00000104092 ENSMUST00000194572 A930014E01Rik TEC Interval_138285 chr6 86915172 86915385 + 0 NA intron (ENSMUSG00000057230.14, intron 1 of 2) protein_coding-intron (ENSMUSG00000057230.14, intron 1 of 19) 41492 ENSMUSG00000108152.1 ENSMUSG00000108152 ENSMUST00000205007 Gm44152 TEC Interval_28876 chr11 78972956 78974529 + 0 NA intron (ENSMUSG00000001123.15, intron 2 of 10) protein_coding-intron (ENSMUSG00000001123.15, intron 2 of 10) -3412 ENSMUSG00000001123.15 ENSMUSG00000001123 ENSMUST00000140073 Lgals9 protein_coding Interval_121213 chr4 154095739 154097717 + 0 NA exon (ENSMUSG00000087071.1, exon 2 of 2) antisense-exon (ENSMUSG00000087071.1, exon 2 of 2) 3249 ENSMUSG00000087071.1 ENSMUSG00000087071 ENSMUST00000143429 Trp73os antisense Interval_132413 chr5 144786552 144787110 + 0 NA intron (ENSMUSG00000045482.16, intron 11 of 70) protein_coding-intron (ENSMUSG00000045482.16, intron 11 of 69) 12406 ENSMUSG00000088685.1 ENSMUSG00000088685 ENSMUST00000158060 Gm23995 snoRNA Interval_32120 chr11 105339757 105341151 + 0 NA promoter-TSS (ENSMUSG00000020695.14) protein_coding-promoter-TSS (ENSMUSG00000020695.14) -378 ENSMUSG00000020695.14 ENSMUSG00000020695 ENSMUST00000151135 Mrc2 protein_coding Interval_111602 chr4 24422326 24423004 + 0 NA promoter-TSS (ENSMUSG00000081148.1) processed_pseudogene-promoter-TSS (ENSMUSG00000081148.1) -812 ENSMUSG00000081148.1 ENSMUSG00000081148 ENSMUST00000121241 Gm11891 processed_pseudogene Interval_38953 chr12 84060924 84063393 + 0 NA Intergenic Intergenic -7167 ENSMUSG00000042540.12 ENSMUSG00000042540 ENSMUST00000072505 Acot5 protein_coding Interval_87069 chr19 45933692 45933949 + 0 NA exon (ENSMUSG00000039901.10, exon 18 of 26) protein_coding-exon (ENSMUSG00000039901.10, exon 18 of 26) 2609 ENSMUSG00000039901.10 ENSMUSG00000039901 ENSMUST00000236730 Armh3 protein_coding Interval_141105 chr6 125017419 125018689 + 0 NA intron (ENSMUSG00000038346.18, intron 2 of 4) protein_coding-intron (ENSMUSG00000038346.18, intron 2 of 10) 8339 ENSMUSG00000038346.18 ENSMUSG00000038346 ENSMUST00000137325 Zfp384 protein_coding Interval_72482 chr17 30103517 30103996 + 0 NA intron (ENSMUSG00000044477.12, intron 2 of 5) protein_coding-intron (ENSMUSG00000044477.12, intron 2 of 4) -32434 ENSMUSG00000044477.12 ENSMUSG00000044477 ENSMUST00000234091 Zfand3 protein_coding Interval_81598 chr18 61979459 61979931 + 0 NA intron (ENSMUSG00000045629.8, intron 1 of 9) protein_coding-intron (ENSMUSG00000045629.8, intron 8 of 16) 1736 ENSMUSG00000045629.8 ENSMUSG00000045629 ENSMUST00000236759 Sh3tc2 protein_coding Interval_121106 chr4 153089025 153090493 + 0 NA Intergenic Intergenic 57184 ENSMUSG00000085648.1 ENSMUSG00000085648 ENSMUST00000151703 Gm13173 lincRNA Interval_11893 chr1 186818564 186818750 + 0 NA Intergenic Intergenic 69261 ENSMUSG00000097784.1 ENSMUSG00000097784 ENSMUST00000180869 A430105J06Rik lincRNA Interval_155191 chr8 27342827 27343001 + 0 NA Intergenic Intergenic -1480 ENSMUSG00000071138.4 ENSMUSG00000071138 ENSMUST00000095375 Tex24 protein_coding Interval_87609 chr19 53718720 53719103 + 0 NA intron (ENSMUSG00000043639.15, intron 1 of 13) protein_coding-intron (ENSMUSG00000043639.15, intron 1 of 13) 41605 ENSMUSG00000043639.15 ENSMUSG00000043639 ENSMUST00000161856 Rbm20 protein_coding Interval_8568 chr1 143017264 143017672 + 0 NA Intergenic Intergenic 77148 ENSMUSG00000101795.2 ENSMUSG00000101795 ENSMUST00000185806 Gm5835 processed_pseudogene Interval_172312 chrX 12873403 12874342 + 0 NA Intergenic Intergenic -3510 ENSMUSG00000077858.1 ENSMUSG00000077858 ENSMUST00000104666 Gm25063 miRNA Interval_123696 chr5 34579135 34579658 + 0 NA intron (ENSMUSG00000029106.14, intron 1 of 17) protein_coding-intron (ENSMUSG00000029106.14, intron 1 of 15) 4308 ENSMUSG00000107128.1 ENSMUSG00000107128 ENSMUST00000202995 Gm42867 TEC Interval_100853 chr2 172900856 172901516 + 0 NA intron (ENSMUSG00000008999.7, intron 2 of 6) protein_coding-intron (ENSMUSG00000008999.7, intron 2 of 6) -36845 ENSMUSG00000093160.1 ENSMUSG00000093160 ENSMUST00000175419 Gm22773 miRNA Interval_97770 chr2 143944964 143946648 + 0 NA Intergenic Intergenic 11839 ENSMUSG00000027422.15 ENSMUSG00000027422 ENSMUST00000037875 Rrbp1 protein_coding Interval_166893 chr9 63741689 63742417 + 0 NA intron (ENSMUSG00000032402.12, intron 1 of 8) protein_coding-intron (ENSMUSG00000032402.12, intron 1 of 8) -30084 ENSMUSG00000032402.12 ENSMUSG00000032402 ENSMUST00000137065 Smad3 protein_coding Interval_91119 chr2 35244537 35245100 + 0 NA Intergenic Intergenic -11566 ENSMUSG00000026879.14 ENSMUSG00000026879 ENSMUST00000124323 Gsn protein_coding Interval_108960 chr3 133605970 133606288 + 0 NA Intergenic Intergenic -17592 ENSMUSG00000077336.1 ENSMUSG00000077336 ENSMUST00000104148 Gm23011 snoRNA Interval_166099 chr9 56599474 56599910 + 0 NA Intergenic Intergenic -7001 ENSMUSG00000097870.2 ENSMUSG00000097870 ENSMUST00000181927 Gm26868 lincRNA Interval_29771 chr11 86691742 86692147 + 0 NA exon (ENSMUSG00000072582.9, exon 3 of 3) protein_coding-exon (ENSMUSG00000072582.9, exon 3 of 3) 7959 ENSMUSG00000072582.9 ENSMUSG00000072582 ENSMUST00000108021 Ptrh2 protein_coding Interval_8160 chr1 136159139 136160283 + 0 NA promoter-TSS (ENSMUSG00000041642.18) protein_coding-promoter-TSS (ENSMUSG00000041642.18) -647 ENSMUSG00000041642.18 ENSMUSG00000041642 ENSMUST00000165333 Kif21b protein_coding Interval_18100 chr10 82411563 82411900 + 0 NA intron (ENSMUSG00000073427.4, intron 7 of 7) protein_coding-intron (ENSMUSG00000073427.4, intron 7 of 7) -18973 ENSMUSG00000112163.1 ENSMUSG00000112163 ENSMUST00000219737 Gm8188 processed_pseudogene Interval_158344 chr8 82138940 82140047 + 0 NA Intergenic Intergenic 13289 ENSMUSG00000089147.1 ENSMUSG00000089147 ENSMUST00000158522 Gm25267 snRNA Interval_71041 chr17 17386167 17386579 + 0 NA TTS (ENSMUSG00000116564.1) protein_coding-TTS (ENSMUSG00000116564.1) 11801 ENSMUSG00000116564.1 ENSMUSG00000116564 ENSMUST00000232199 Riok2 protein_coding Interval_142865 chr6 146577030 146578565 + 0 NA promoter-TSS (ENSMUSG00000040250.14) protein_coding-promoter-TSS (ENSMUSG00000040250.14) -17 ENSMUSG00000040250.14 ENSMUSG00000040250 ENSMUST00000205078 Ints13 protein_coding Interval_132174 chr5 143100830 143101163 + 0 NA intron (ENSMUSG00000045078.12, intron 1 of 16) protein_coding-intron (ENSMUSG00000045078.12, intron 1 of 16) 11984 ENSMUSG00000045078.12 ENSMUSG00000045078 ENSMUST00000200002 Rnf216 protein_coding Interval_59689 chr15 57979412 57979832 + 0 NA Intergenic Intergenic -22524 ENSMUSG00000051225.9 ENSMUSG00000051225 ENSMUST00000161231 Fam83a protein_coding Interval_141462 chr6 128414038 128415203 + 0 NA promoter-TSS (ENSMUSG00000001518.12) protein_coding-promoter-TSS (ENSMUSG00000001518.12) 10298 ENSMUSG00000001518.12 ENSMUSG00000001518 ENSMUST00000204467 Itfg2 protein_coding Interval_29757 chr11 86599221 86600433 + 0 NA intron (ENSMUSG00000018171.9, intron 1 of 2) protein_coding-intron (ENSMUSG00000018171.9, intron 10 of 11) 2468 ENSMUSG00000018171.9 ENSMUSG00000018171 ENSMUST00000143991 Vmp1 protein_coding Interval_52926 chr14 52085016 52085932 + 0 NA intron (ENSMUSG00000060373.15, intron 1 of 7) protein_coding-intron (ENSMUSG00000060373.15, intron 2 of 8) -13547 ENSMUSG00000115541.1 ENSMUSG00000115541 ENSMUST00000227288 Gm49258 processed_pseudogene Interval_130521 chr5 128549101 128550260 + 0 NA Intergenic Intergenic 29459 ENSMUSG00000105172.1 ENSMUSG00000105172 ENSMUST00000196193 Gm42499 TEC Interval_83346 chr18 84437848 84438406 + 0 NA intron (ENSMUSG00000048410.17, intron 3 of 8) protein_coding-intron (ENSMUSG00000048410.17, intron 2 of 2) -3192 ENSMUSG00000048410.17 ENSMUSG00000048410 ENSMUST00000182297 Zfp407 protein_coding Interval_162569 chr9 4616690 4617158 + 0 NA intron (ENSMUSG00000025892.16, intron 3 of 15) protein_coding-intron (ENSMUSG00000025892.16, intron 4 of 16) -160901 ENSMUSG00000092896.2 ENSMUSG00000092896 ENSMUST00000175155 Gm23811 miRNA Interval_92232 chr2 57231277 57232151 + 0 NA Intergenic Intergenic -5964 ENSMUSG00000026827.12 ENSMUSG00000026827 ENSMUST00000154612 Gpd2 protein_coding Interval_36628 chr12 51625183 51625802 + 0 NA intron (ENSMUSG00000020954.16, intron 11 of 15) protein_coding-intron (ENSMUSG00000020954.16, intron 13 of 17) 18306 ENSMUSG00000020954.16 ENSMUSG00000020954 ENSMUST00000218212 Strn3 protein_coding Interval_36565 chr12 50198218 50198467 + 0 NA Intergenic Intergenic 78033 ENSMUSG00000112353.1 ENSMUSG00000112353 ENSMUST00000218806 Gm40418 lincRNA Interval_163067 chr9 14961826 14962224 + 0 NA intron (ENSMUSG00000110766.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000110766.1, intron 1 of 1) 12562 ENSMUSG00000110766.1 ENSMUSG00000110766 ENSMUST00000217210 Gm47214 lincRNA Interval_162593 chr9 5529187 5529565 + 0 NA Intergenic Intergenic 183900 ENSMUSG00000025887.10 ENSMUSG00000025887 ENSMUST00000151332 Casp12 protein_coding Interval_28699 chr11 77818305 77818566 + 0 NA intron (ENSMUSG00000000631.20, intron 5 of 41) protein_coding-intron (ENSMUSG00000000631.20, intron 4 of 39) 17085 ENSMUSG00000000631.20 ENSMUSG00000000631 ENSMUST00000142571 Myo18a protein_coding Interval_62257 chr15 89210055 89212233 + 0 NA promoter-TSS (ENSMUSG00000036561.9) protein_coding-promoter-TSS (ENSMUSG00000036561.9) -457 ENSMUSG00000036561.9 ENSMUSG00000036561 ENSMUST00000227011 Ppp6r2 protein_coding Interval_86179 chr19 37575010 37575411 + 0 NA intron (ENSMUSG00000053799.8, intron 6 of 22) protein_coding-intron (ENSMUSG00000053799.8, intron 5 of 21) 54331 ENSMUSG00000053799.8 ENSMUSG00000053799 ENSMUST00000238817 Exoc6 protein_coding Interval_29581 chr11 85130075 85130380 + 0 NA intron (ENSMUSG00000000804.14, intron 1 of 3) protein_coding-intron (ENSMUSG00000000804.14, intron 1 of 33) 9702 ENSMUSG00000000804.14 ENSMUSG00000000804 ENSMUST00000174809 Usp32 protein_coding Interval_152004 chr7 128136839 128137063 + 0 NA intron (ENSMUSG00000030789.9, intron 14 of 29) protein_coding-intron (ENSMUSG00000030789.9, intron 14 of 29) 10116 ENSMUSG00000108578.1 ENSMUSG00000108578 ENSMUST00000205866 Gm45700 processed_pseudogene Interval_69051 chr16 90314561 90315414 + 0 NA exon (ENSMUSG00000116600.1, exon 1 of 2) lincRNA-exon (ENSMUSG00000116600.1, exon 1 of 2) 115 ENSMUSG00000116600.1 ENSMUSG00000116600 ENSMUST00000232142 Gm49707 lincRNA Interval_5945 chr1 93407334 93407544 + 0 NA TTS (ENSMUSG00000034088.15) protein_coding-TTS (ENSMUSG00000034088.15) 5578 ENSMUSG00000034107.10 ENSMUSG00000034107 ENSMUST00000190340 Ano7 protein_coding Interval_118708 chr4 133301509 133302461 + 0 NA intron (ENSMUSG00000037622.14, intron 10 of 15) protein_coding-intron (ENSMUSG00000037622.14, intron 10 of 15) 20245 ENSMUSG00000037622.14 ENSMUSG00000037622 ENSMUST00000140976 Wdtc1 protein_coding Interval_124250 chr5 42188016 42189380 + 0 NA intron (ENSMUSG00000067285.4, intron 1 of 2) protein_coding-intron (ENSMUSG00000067285.4, intron 1 of 2) 120738 ENSMUSG00000067285.4 ENSMUSG00000067285 ENSMUST00000087332 Gm16223 protein_coding Interval_131090 chr5 135029175 135030331 + 0 NA intron (ENSMUSG00000007207.10, intron 1 of 6) protein_coding-intron (ENSMUSG00000007207.10, intron 1 of 9) 6246 ENSMUSG00000007207.10 ENSMUSG00000007207 ENSMUST00000144198 Stx1a protein_coding Interval_108496 chr3 127705590 127706180 + 0 NA intron (ENSMUSG00000028028.11, intron 2 of 12) protein_coding-intron (ENSMUSG00000028028.11, intron 3 of 13) 11142 ENSMUSG00000104888.1 ENSMUSG00000104888 ENSMUST00000199867 1500005C15Rik TEC Interval_75287 chr17 65711848 65712336 + 0 NA intron (ENSMUSG00000056515.9, intron 3 of 6) protein_coding-intron (ENSMUSG00000056515.9, intron 3 of 6) -50514 ENSMUSG00000117114.1 ENSMUSG00000117114 ENSMUST00000233942 Gm49867 processed_pseudogene Interval_101614 chr3 7754435 7754691 + 0 NA Intergenic Intergenic -138772 ENSMUSG00000103399.1 ENSMUSG00000103399 ENSMUST00000194764 Gm29747 processed_pseudogene Interval_33478 chr11 116793727 116794173 + 0 NA Intergenic Intergenic -18443 ENSMUSG00000009588.9 ENSMUSG00000009588 ENSMUST00000009732 St6galnac1 protein_coding Interval_81326 chr18 58056199 58056923 + 0 NA intron (ENSMUSG00000024598.9, intron 36 of 64) protein_coding-intron (ENSMUSG00000024598.9, intron 36 of 64) 129356 ENSMUSG00000024597.11 ENSMUSG00000024597 ENSMUST00000236673 Slc12a2 protein_coding Interval_2232 chr1 37249549 37249915 + 0 NA intron (ENSMUSG00000026114.14, intron 4 of 6) protein_coding-intron (ENSMUSG00000026114.14, intron 3 of 5) 31353 ENSMUSG00000026114.14 ENSMUSG00000026114 ENSMUST00000027288 Cnga3 protein_coding Interval_7233 chr1 128087267 128087543 + 0 NA exon (ENSMUSG00000102782.1, exon 1 of 1) TEC-exon (ENSMUSG00000102782.1, exon 1 of 1) 1926 ENSMUSG00000102782.1 ENSMUSG00000102782 ENSMUST00000194969 Gm37625 TEC Interval_119314 chr4 136820017 136820497 + 0 NA intron (ENSMUSG00000028664.14, intron 1 of 2) protein_coding-intron (ENSMUSG00000028664.14, intron 1 of 15) 65930 ENSMUSG00000036905.8 ENSMUSG00000036905 ENSMUST00000046384 C1qb protein_coding Interval_149640 chr7 100279473 100280144 + 0 NA TTS (ENSMUSG00000030729.17) protein_coding-TTS (ENSMUSG00000030729.17) 15133 ENSMUSG00000089987.2 ENSMUSG00000089987 ENSMUST00000160622 Gpx2-ps1 processed_pseudogene Interval_74991 chr17 59100126 59100340 + 0 NA Intergenic Intergenic 82919 ENSMUSG00000086594.2 ENSMUSG00000086594 ENSMUST00000167453 Nudt12os antisense Interval_29722 chr11 86403658 86404866 + 0 NA Intergenic Intergenic -4564 ENSMUSG00000088091.1 ENSMUSG00000088091 ENSMUST00000157466 Gm23667 rRNA Interval_85978 chr19 34526681 34527640 + 0 NA exon (ENSMUSG00000024781.16, exon 1 of 2) protein_coding-exon (ENSMUSG00000024781.16, exon 1 of 2) 251 ENSMUSG00000024781.16 ENSMUSG00000024781 ENSMUST00000237513 Lipa protein_coding Interval_10104 chr1 165834421 165834824 + 0 NA intron (ENSMUSG00000005763.15, intron 1 of 8) protein_coding-intron (ENSMUSG00000005763.15, intron 1 of 7) 9986 ENSMUSG00000102363.1 ENSMUSG00000102363 ENSMUST00000192693 Gm32999 TEC Interval_23398 chr11 22219100 22219374 + 0 NA intron (ENSMUSG00000042302.14, intron 5 of 24) protein_coding-intron (ENSMUSG00000042302.14, intron 4 of 23) 67558 ENSMUSG00000042302.14 ENSMUSG00000042302 ENSMUST00000137594 Ehbp1 protein_coding Interval_152293 chr7 131469483 131469782 + 0 NA intron (ENSMUSG00000030849.18, intron 2 of 6) protein_coding-intron (ENSMUSG00000030849.18, intron 2 of 6) 3235 ENSMUSG00000108989.1 ENSMUSG00000108989 ENSMUST00000207802 Gm44984 processed_pseudogene Interval_158863 chr8 87488226 87489089 + 0 NA intron (ENSMUSG00000097992.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000097248.9, intron 1 of 1) 6805 ENSMUSG00000097992.1 ENSMUSG00000097992 ENSMUST00000183294 Gm27016 lincRNA Interval_87066 chr19 45907092 45908170 + 0 NA intron (ENSMUSG00000039901.10, intron 20 of 25) protein_coding-intron (ENSMUSG00000039901.10, intron 20 of 25) 28798 ENSMUSG00000039901.10 ENSMUSG00000039901 ENSMUST00000236730 Armh3 protein_coding Interval_143928 chr7 17999712 17999914 + 0 NA Intergenic Intergenic -10076 ENSMUSG00000057195.13 ENSMUSG00000057195 ENSMUST00000108488 Ceacam13 protein_coding Interval_118119 chr4 129057729 129059414 + 0 NA promoter-TSS (ENSMUSG00000028793.15) protein_coding-promoter-TSS (ENSMUSG00000028793.15) 300 ENSMUSG00000028793.15 ENSMUSG00000028793 ENSMUST00000147238 Rnf19b protein_coding Interval_16292 chr10 62012316 62013404 + 0 NA Intergenic Intergenic -10544 ENSMUSG00000112018.1 ENSMUSG00000112018 ENSMUST00000220135 Gm47919 TEC Interval_114792 chr4 85306263 85306567 + 0 NA intron (ENSMUSG00000028488.15, intron 1 of 7) protein_coding-intron (ENSMUSG00000028488.15, intron 1 of 8) -60653 ENSMUSG00000081862.1 ENSMUSG00000081862 ENSMUST00000121508 Gm12413 processed_pseudogene Interval_90587 chr2 31294540 31296489 + 0 NA exon (ENSMUSG00000062661.6, exon 8 of 8) protein_coding-exon (ENSMUSG00000062661.6, exon 8 of 8) -18901 ENSMUSG00000055632.18 ENSMUSG00000055632 ENSMUST00000141294 Hmcn2 protein_coding Interval_26972 chr11 61976026 61976245 + 0 NA promoter-TSS (ENSMUSG00000042331.13) protein_coding-promoter-TSS (ENSMUSG00000042331.13) -1785 ENSMUSG00000083212.3 ENSMUSG00000083212 ENSMUST00000120062 Gm12274 processed_pseudogene Interval_86244 chr19 38044974 38045332 + 0 NA Intergenic Intergenic -1754 ENSMUSG00000048612.16 ENSMUSG00000048612 ENSMUST00000226084 Myof protein_coding Interval_81517 chr18 61328052 61328684 + 0 NA intron (ENSMUSG00000033871.14, intron 1 of 11) protein_coding-intron (ENSMUSG00000033871.14, intron 2 of 12) 53345 ENSMUSG00000024575.16 ENSMUSG00000024575 ENSMUST00000135688 Pde6a protein_coding Interval_153700 chr8 4728053 4729436 + 0 NA Intergenic Intergenic -5908 ENSMUSG00000108962.1 ENSMUSG00000108962 ENSMUST00000209127 Gm44959 unprocessed_pseudogene Interval_100516 chr2 169837464 169837842 + 0 NA intron (ENSMUSG00000047907.11, intron 1 of 2) protein_coding-intron (ENSMUSG00000047907.11, intron 1 of 1) -47240 ENSMUSG00000047907.11 ENSMUSG00000047907 ENSMUST00000140699 Tshz2 protein_coding Interval_161579 chr8 121334439 121336002 + 0 NA intron (ENSMUSG00000097384.1, intron 1 of 1) protein_coding-intron (ENSMUSG00000092329.1, intron 1 of 15) 21616 ENSMUSG00000097384.1 ENSMUSG00000097384 ENSMUST00000181200 Gm26815 lincRNA Interval_66671 chr16 36021450 36021767 + 0 NA promoter-TSS (ENSMUSG00000022905.12) protein_coding-promoter-TSS (ENSMUSG00000022905.12) -19582 ENSMUSG00000034379.9 ENSMUSG00000034379 ENSMUST00000042203 Wdr5b protein_coding Interval_83542 chr18 89027797 89028797 + 0 NA intron (ENSMUSG00000023066.10, intron 20 of 48) protein_coding-intron (ENSMUSG00000023066.10, intron 20 of 48) 56267 ENSMUSG00000098676.1 ENSMUSG00000098676 ENSMUST00000183668 Mir6359 miRNA Interval_65225 chr16 20672086 20674279 + 0 NA promoter-TSS (ENSMUSG00000045983.16) protein_coding-intron (ENSMUSG00000045983.16, intron 1 of 28) 362 ENSMUSG00000045983.16 ENSMUSG00000045983 ENSMUST00000129958 Eif4g1 protein_coding Interval_43109 chr13 24179288 24180238 + 0 NA intron (ENSMUSG00000021338.17, intron 2 of 5) protein_coding-intron (ENSMUSG00000021338.17, intron 2 of 37) -16134 ENSMUSG00000081707.1 ENSMUSG00000081707 ENSMUST00000120579 Gm11343 processed_pseudogene Interval_122148 chr5 18297968 18298672 + 0 NA intron (ENSMUSG00000057614.6, intron 3 of 7) protein_coding-intron (ENSMUSG00000057614.6, intron 3 of 7) -52028 ENSMUSG00000104540.1 ENSMUSG00000104540 ENSMUST00000198905 Gm3527 processed_pseudogene Interval_88773 chr2 10521080 10522945 + 0 NA intron (ENSMUSG00000061186.15, intron 11 of 22) protein_coding-intron (ENSMUSG00000061186.15, intron 10 of 22) 3857 ENSMUSG00000080594.1 ENSMUSG00000080594 ENSMUST00000116944 Mir669h miRNA Interval_116482 chr4 114459710 114460071 + 0 NA intron (ENSMUSG00000070867.4, intron 2 of 6) protein_coding-intron (ENSMUSG00000070867.4, intron 2 of 6) 53166 ENSMUSG00000070867.4 ENSMUSG00000070867 ENSMUST00000094894 Trabd2b protein_coding Interval_132924 chr5 148765912 148766272 + 0 NA Intergenic Intergenic -11871 ENSMUSG00000085740.1 ENSMUSG00000085740 ENSMUST00000155504 4930505K14Rik lincRNA Interval_50318 chr14 11820317 11820544 + 0 NA intron (ENSMUSG00000021745.14, intron 2 of 3) protein_coding-intron (ENSMUSG00000021745.14, intron 2 of 29) -47164 ENSMUSG00000114431.1 ENSMUSG00000114431 ENSMUST00000224051 Gm48601 TEC Interval_49595 chr13 113316795 113317079 + 0 NA intron (ENSMUSG00000021763.17, intron 1 of 9) protein_coding-intron (ENSMUSG00000021763.17, intron 1 of 9) 23778 ENSMUSG00000021763.17 ENSMUSG00000021763 ENSMUST00000135096 BC067074 protein_coding Interval_91791 chr2 49607176 49607797 + 0 NA Intergenic Intergenic -73013 ENSMUSG00000082879.1 ENSMUSG00000082879 ENSMUST00000120607 Gm13525 processed_pseudogene Interval_143979 chr7 18741645 18742329 + 0 NA promoter-TSS (ENSMUSG00000109023.1) unprocessed_pseudogene-promoter-TSS (ENSMUSG00000109023.1) -340 ENSMUSG00000109023.1 ENSMUSG00000109023 ENSMUST00000208194 Gm44565 unprocessed_pseudogene Interval_85358 chr19 25171571 25172967 + 0 NA intron (ENSMUSG00000052085.7, intron 35 of 47) protein_coding-intron (ENSMUSG00000052085.7, intron 35 of 47) -6053 ENSMUSG00000065634.1 ENSMUSG00000065634 ENSMUST00000083700 Gm24252 snoRNA Interval_63804 chr15 103547960 103548332 + 0 NA Intergenic Intergenic -10152 ENSMUSG00000022490.7 ENSMUSG00000022490 ENSMUST00000228813 Ppp1r1a protein_coding Interval_74507 chr17 52542757 52543491 + 0 NA Intergenic Intergenic 59536 ENSMUSG00000098552.1 ENSMUSG00000098552 ENSMUST00000183438 Gm27217 antisense Interval_76746 chr17 83795572 83795839 + 0 NA intron (ENSMUSG00000055817.18, intron 1 of 2) protein_coding-intron (ENSMUSG00000055817.18, intron 14 of 16) 51084 ENSMUSG00000000673.9 ENSMUSG00000000673 ENSMUST00000234312 Haao protein_coding Interval_133193 chr5 150451751 150452739 + 0 NA intron (ENSMUSG00000056602.12, intron 49 of 60) protein_coding-intron (ENSMUSG00000056602.12, intron 49 of 60) 5463 ENSMUSG00000107262.1 ENSMUSG00000107262 ENSMUST00000201000 Gm18753 processed_pseudogene Interval_156913 chr8 61623972 61624345 + 0 NA intron (ENSMUSG00000058056.16, intron 10 of 21) protein_coding-intron (ENSMUSG00000058056.16, intron 10 of 19) -108258 ENSMUSG00000058056.16 ENSMUSG00000058056 ENSMUST00000123523 Palld protein_coding Interval_30679 chr11 95841264 95842929 + 0 NA promoter-TSS (ENSMUSG00000038811.13) protein_coding-promoter-TSS (ENSMUSG00000038811.13) 2 ENSMUSG00000018381.15 ENSMUSG00000018381 ENSMUST00000143492 Abi3 protein_coding Interval_143665 chr7 14101738 14102486 + 0 NA intron (ENSMUSG00000074375.3, intron 3 of 5) protein_coding-intron (ENSMUSG00000074375.3, intron 3 of 5) 20932 ENSMUSG00000074375.3 ENSMUSG00000074375 ENSMUST00000098809 Sult2a3 protein_coding Interval_128438 chr5 113313803 113314511 + 0 NA Intergenic Intergenic 7496 ENSMUSG00000104705.1 ENSMUSG00000104705 ENSMUST00000199950 4930405N21Rik TEC Interval_61820 chr15 84400448 84401925 + 0 NA intron (ENSMUSG00000062760.11, intron 4 of 4) protein_coding-intron (ENSMUSG00000062760.11, intron 4 of 4) 45911 ENSMUSG00000062760.11 ENSMUSG00000062760 ENSMUST00000186527 Shisal1 protein_coding Interval_13973 chr10 25199730 25201051 + 0 NA promoter-TSS (ENSMUSG00000039166.16) protein_coding-promoter-TSS (ENSMUSG00000039166.16) 20301 ENSMUSG00000039166.16 ENSMUSG00000039166 ENSMUST00000176231 Akap7 protein_coding Interval_3170 chr1 54394435 54394700 + 0 NA Intergenic Intergenic 29487 ENSMUSG00000041303.7 ENSMUSG00000041303 ENSMUST00000189906 Gtf3c3 protein_coding Interval_126648 chr5 91666891 91667536 + 0 NA Intergenic Intergenic 70866 ENSMUSG00000107261.1 ENSMUSG00000107261 ENSMUST00000202320 Trmt112-ps1 processed_pseudogene Interval_34566 chr12 5209814 5211029 + 0 NA intron (ENSMUSG00000020627.10, intron 1 of 11) protein_coding-intron (ENSMUSG00000020627.10, intron 2 of 13) 25543 ENSMUSG00000112020.1 ENSMUSG00000112020 ENSMUST00000219031 Gm48532 TEC Interval_43222 chr13 25706071 25706370 + 0 NA Intergenic Intergenic -25077 ENSMUSG00000082161.1 ENSMUSG00000082161 ENSMUST00000121436 Gm11350 processed_pseudogene Interval_126644 chr5 91592748 91593226 + 0 NA intron (ENSMUSG00000034981.9, intron 1 of 3) protein_coding-intron (ENSMUSG00000034981.9, intron 1 of 3) 75372 ENSMUSG00000034981.9 ENSMUSG00000034981 ENSMUST00000040576 Parm1 protein_coding Interval_55053 chr14 77529077 77529400 + 0 NA intron (ENSMUSG00000022012.9, intron 6 of 6) protein_coding-intron (ENSMUSG00000022012.9, intron 7 of 18) -1160 ENSMUSG00000084431.1 ENSMUSG00000084431 ENSMUST00000122482 n-R5s48 rRNA Interval_11307 chr1 180864814 180865161 + 0 NA intron (ENSMUSG00000038806.7, intron 1 of 1) protein_coding-intron (ENSMUSG00000038806.7, intron 6 of 6) 2887 ENSMUSG00000038806.7 ENSMUSG00000038806 ENSMUST00000194948 Sde2 protein_coding Interval_132928 chr5 148789534 148789988 + 0 NA Intergenic Intergenic 11798 ENSMUSG00000085740.1 ENSMUSG00000085740 ENSMUST00000155504 4930505K14Rik lincRNA Interval_167783 chr9 72683994 72684296 + 0 NA intron (ENSMUSG00000032216.15, intron 5 of 7) protein_coding-intron (ENSMUSG00000032216.15, intron 5 of 28) -3079 ENSMUSG00000104273.1 ENSMUSG00000104273 ENSMUST00000195338 A530064N14Rik TEC Interval_89618 chr2 23331696 23331952 + 0 NA intron (ENSMUSG00000069132.3, intron 1 of 1) protein_coding-intron (ENSMUSG00000069132.3, intron 1 of 1) 10578 ENSMUSG00000069132.3 ENSMUSG00000069132 ENSMUST00000102945 Nxph2 protein_coding Interval_98739 chr2 154603399 154604142 + 0 NA promoter-TSS (ENSMUSG00000000876.11) protein_coding-promoter-TSS (ENSMUSG00000000876.11) -82 ENSMUSG00000000876.11 ENSMUSG00000000876 ENSMUST00000109703 Pxmp4 protein_coding Interval_22460 chr11 10480481 10480755 + 0 NA Intergenic Intergenic -103536 ENSMUSG00000084045.1 ENSMUSG00000084045 ENSMUST00000118697 Gm11997 processed_pseudogene Interval_30456 chr11 94485406 94486497 + 0 NA promoter-TSS (ENSMUSG00000020867.13) protein_coding-promoter-TSS (ENSMUSG00000020867.13) -1539 ENSMUSG00000020867.13 ENSMUSG00000020867 ENSMUST00000125310 Spata20 protein_coding Interval_72540 chr17 30594668 30595068 + 0 NA intron (ENSMUSG00000024026.13, intron 6 of 7) protein_coding-intron (ENSMUSG00000024026.13, intron 6 of 6) 3360 ENSMUSG00000118053.1 ENSMUSG00000118053 ENSMUST00000237205 Gm50244 TEC Interval_166544 chr9 60776774 60777372 + 0 NA Intergenic Intergenic -17552 ENSMUSG00000034485.10 ENSMUSG00000034485 ENSMUST00000216574 Uaca protein_coding Interval_79181 chr18 25486046 25487707 + 0 NA promoter-TSS (ENSMUSG00000024268.16) protein_coding-promoter-TSS (ENSMUSG00000024268.16) 14363 ENSMUSG00000024268.16 ENSMUSG00000024268 ENSMUST00000224143 Celf4 protein_coding Interval_70101 chr17 5321820 5323021 + 0 NA intron (ENSMUSG00000069729.14, intron 13 of 19) protein_coding-intron (ENSMUSG00000069729.14, intron 12 of 18) -66343 ENSMUSG00000101133.1 ENSMUSG00000101133 ENSMUST00000190732 Gm29050 antisense Interval_73970 chr17 45763068 45763410 + 0 NA intron (ENSMUSG00000097727.8, intron 1 of 2) lincRNA-intron (ENSMUSG00000097727.8, intron 1 of 2) -3956 ENSMUSG00000097727.8 ENSMUSG00000097727 ENSMUST00000233473 F630040K05Rik lincRNA Interval_122178 chr5 18906438 18906611 + 0 NA Intergenic Intergenic 41947 ENSMUSG00000089364.1 ENSMUSG00000089364 ENSMUST00000158739 Gm23822 snoRNA Interval_168839 chr9 87924177 87924399 + 0 NA Intergenic Intergenic -35701 ENSMUSG00000093937.1 ENSMUSG00000093937 ENSMUST00000180264 Gm25528 snoRNA Interval_78447 chr18 12898959 12899204 + 0 NA TTS (ENSMUSG00000080866.1) processed_pseudogene-TTS (ENSMUSG00000080866.1) 654 ENSMUSG00000080866.1 ENSMUSG00000080866 ENSMUST00000118252 Gm5687 processed_pseudogene Interval_51440 chr14 27582527 27583350 + 0 NA Intergenic Intergenic -30780 ENSMUSG00000114482.1 ENSMUSG00000114482 ENSMUST00000225617 Gm7604 processed_pseudogene Interval_96709 chr2 127307174 127308950 + 0 NA Intergenic Intergenic 15951 ENSMUSG00000027367.16 ENSMUSG00000027367 ENSMUST00000154549 Stard7 protein_coding Interval_81836 chr18 65170849 65171330 + 0 NA TTS (ENSMUSG00000024589.18) protein_coding-TTS (ENSMUSG00000024589.18) -73198 ENSMUSG00000118017.1 ENSMUSG00000118017 ENSMUST00000235231 Gm29966 lincRNA Interval_17939 chr10 80917235 80918539 + 0 NA promoter-TSS (ENSMUSG00000062075.13) protein_coding-promoter-TSS (ENSMUSG00000062075.13) 358 ENSMUSG00000062075.13 ENSMUSG00000062075 ENSMUST00000159094 Lmnb2 protein_coding Interval_154391 chr8 15438165 15439752 + 0 NA TTS (ENSMUSG00000110288.1) processed_pseudogene-TTS (ENSMUSG00000110288.1) 1092 ENSMUSG00000110288.1 ENSMUSG00000110288 ENSMUST00000210509 Gm45678 processed_pseudogene Interval_147882 chr7 75014815 75015555 + 0 NA Intergenic Intergenic -15048 ENSMUSG00000108803.1 ENSMUSG00000108803 ENSMUST00000206684 4930533N22Rik lincRNA Interval_37199 chr12 59507378 59508208 + 0 NA Intergenic Intergenic 138373 ENSMUSG00000112851.1 ENSMUSG00000112851 ENSMUST00000219830 Gm7727 processed_pseudogene Interval_154662 chr8 22425911 22427963 + 0 NA TTS (ENSMUSG00000031533.4) protein_coding-TTS (ENSMUSG00000031533.4) 15539 ENSMUSG00000031533.4 ENSMUSG00000031533 ENSMUST00000211083 Mrps31 protein_coding Interval_87307 chr19 47526385 47527170 + 0 NA intron (ENSMUSG00000042694.17, intron 3 of 3) protein_coding-intron (ENSMUSG00000042694.17, intron 3 of 9) 10247 ENSMUSG00000042694.17 ENSMUSG00000042694 ENSMUST00000183283 Stn1 protein_coding Interval_49840 chr13 116982652 116983210 + 0 NA intron (ENSMUSG00000021725.9, intron 2 of 24) protein_coding-intron (ENSMUSG00000021725.9, intron 3 of 26) 42342 ENSMUSG00000021725.9 ENSMUSG00000021725 ENSMUST00000223833 Parp8 protein_coding Interval_80738 chr18 46713009 46714292 + 0 NA TTS (ENSMUSG00000033022.8) protein_coding-TTS (ENSMUSG00000033022.8) 14705 ENSMUSG00000033022.8 ENSMUSG00000033022 ENSMUST00000234222 Cdo1 protein_coding Interval_79869 chr18 35661626 35662640 + 0 NA promoter-TSS (ENSMUSG00000024352.12) protein_coding-promoter-TSS (ENSMUSG00000024352.12) -2 ENSMUSG00000024352.12 ENSMUSG00000024352 ENSMUST00000236574 Spata24 protein_coding Interval_70183 chr17 6017464 6017813 + 0 NA TTS (ENSMUSG00000023805.17) protein_coding-TTS (ENSMUSG00000023805.17) 9604 ENSMUSG00000023805.17 ENSMUSG00000023805 ENSMUST00000126881 Synj2 protein_coding Interval_22440 chr11 10127386 10127665 + 0 NA Intergenic Intergenic -111812 ENSMUSG00000082312.1 ENSMUSG00000082312 ENSMUST00000117538 Gm11996 processed_pseudogene Interval_127189 chr5 100938203 100938427 + 0 NA Intergenic Intergenic -24608 ENSMUSG00000106255.1 ENSMUSG00000106255 ENSMUST00000199211 Gm36793 lincRNA Interval_57675 chr15 14988829 14989002 + 0 NA Intergenic Intergenic -149272 ENSMUSG00000115208.1 ENSMUSG00000115208 ENSMUST00000226940 Gm49118 processed_pseudogene Interval_28861 chr11 78820320 78821555 + 0 NA Intergenic Intergenic -3450 ENSMUSG00000088748.1 ENSMUSG00000088748 ENSMUST00000158123 Gm23219 snRNA Interval_65974 chr16 30641105 30642463 + 0 NA Intergenic Intergenic 42061 ENSMUSG00000046546.3 ENSMUSG00000046546 ENSMUST00000059078 Fam43a protein_coding Interval_88710 chr2 9916340 9916631 + 0 NA intron (ENSMUSG00000025782.12, intron 4 of 4) protein_coding-intron (ENSMUSG00000025782.12, intron 6 of 6) 10307 ENSMUSG00000075534.5 ENSMUSG00000075534 ENSMUST00000149014 Gm13262 antisense Interval_151697 chr7 126115470 126116298 + 0 NA exon (ENSMUSG00000000131.15, exon 15 of 24) protein_coding-exon (ENSMUSG00000000131.15, exon 15 of 24) -33473 ENSMUSG00000046182.8 ENSMUSG00000046182 ENSMUST00000073935 Gsg1l protein_coding Interval_44556 chr13 46014818 46015674 + 0 NA Intergenic Intergenic -45351 ENSMUSG00000113860.1 ENSMUSG00000113860 ENSMUST00000222657 Gm45949 lincRNA Interval_61684 chr15 83392415 83392956 + 0 NA intron (ENSMUSG00000016664.16, intron 2 of 10) protein_coding-intron (ENSMUSG00000016664.16, intron 2 of 11) -7594 ENSMUSG00000016664.16 ENSMUSG00000016664 ENSMUST00000229337 Pacsin2 protein_coding Interval_125458 chr5 67289866 67290276 + 0 NA exon (ENSMUSG00000037720.16, exon 8 of 8) protein_coding-exon (ENSMUSG00000037720.16, exon 8 of 8) -25655 ENSMUSG00000029221.15 ENSMUSG00000029221 ENSMUST00000161169 Slc30a9 protein_coding Interval_36494 chr12 46256088 46256280 + 0 NA Intergenic Intergenic 17700 ENSMUSG00000112915.1 ENSMUSG00000112915 ENSMUST00000219862 Gm18112 unprocessed_pseudogene Interval_133247 chr5 150863300 150863557 + 0 NA TTS (ENSMUSG00000107047.1) lincRNA-TTS (ENSMUSG00000107047.1) 19214 ENSMUSG00000107047.1 ENSMUSG00000107047 ENSMUST00000200887 Gm43298 lincRNA Interval_11363 chr1 181232297 181235030 + 0 NA Intergenic Intergenic 7677 ENSMUSG00000054135.2 ENSMUSG00000054135 ENSMUST00000066988 A430110L20Rik lincRNA Interval_109661 chr3 145806056 145806697 + 0 NA intron (ENSMUSG00000028194.15, intron 1 of 5) protein_coding-intron (ENSMUSG00000028194.15, intron 1 of 5) -4103 ENSMUSG00000028194.15 ENSMUSG00000028194 ENSMUST00000127193 Ddah1 protein_coding Interval_61214 chr15 80011762 80015412 + 0 NA promoter-TSS (ENSMUSG00000000489.7) protein_coding-promoter-TSS (ENSMUSG00000000489.7) -384 ENSMUSG00000000489.7 ENSMUSG00000000489 ENSMUST00000229168 Pdgfb protein_coding Interval_54644 chr14 72645705 72646393 + 0 NA intron (ENSMUSG00000033487.14, intron 3 of 3) protein_coding-intron (ENSMUSG00000033487.14, intron 3 of 25) 56297 ENSMUSG00000090216.1 ENSMUSG00000090216 ENSMUST00000160445 Gm16549 antisense Interval_53415 chr14 57145667 57145982 + 0 NA Intergenic Intergenic -20603 ENSMUSG00000040055.9 ENSMUSG00000040055 ENSMUST00000162931 Gjb6 protein_coding Interval_142191 chr6 138053965 138055770 + 0 NA intron (ENSMUSG00000044378.12, intron 3 of 8) protein_coding-intron (ENSMUSG00000044378.12, intron 2 of 7) 25049 ENSMUSG00000044378.12 ENSMUSG00000044378 ENSMUST00000154461 Slc15a5 protein_coding Interval_108977 chr3 133818415 133818698 + 0 NA promoter-TSS (ENSMUSG00000104645.1) lincRNA-promoter-TSS (ENSMUSG00000104645.1) -38 ENSMUSG00000104645.1 ENSMUSG00000104645 ENSMUST00000200327 Gm30484 lincRNA Interval_44561 chr13 46043195 46044237 + 0 NA Intergenic Intergenic -16881 ENSMUSG00000113860.1 ENSMUSG00000113860 ENSMUST00000222657 Gm45949 lincRNA Interval_126651 chr5 91720938 91721751 + 0 NA Intergenic Intergenic 16735 ENSMUSG00000107261.1 ENSMUSG00000107261 ENSMUST00000202320 Trmt112-ps1 processed_pseudogene Interval_141100 chr6 124992773 124994264 + 0 NA Intergenic Intergenic -4919 ENSMUSG00000030329.11 ENSMUSG00000030329 ENSMUST00000160666 Pianp protein_coding Interval_39340 chr12 86808987 86809361 + 0 NA promoter-TSS (ENSMUSG00000088403.1) misc_RNA-promoter-TSS (ENSMUSG00000088403.1) -783 ENSMUSG00000088403.1 ENSMUSG00000088403 ENSMUST00000157778 Gm25888 misc_RNA Interval_4115 chr1 69105419 69108784 + 0 NA promoter-TSS (ENSMUSG00000087514.1) sense_intronic-promoter-TSS (ENSMUSG00000087514.1) -361 ENSMUSG00000087514.1 ENSMUSG00000087514 ENSMUST00000140116 Gm16076 sense_intronic Interval_26158 chr11 54804509 54805027 + 0 NA Intergenic Intergenic -15151 ENSMUSG00000086789.1 ENSMUSG00000086789 ENSMUST00000154044 Lyrm7os antisense Interval_20827 chr10 121336335 121337452 + 0 NA intron (ENSMUSG00000052302.6, intron 2 of 5) protein_coding-intron (ENSMUSG00000052302.6, intron 2 of 5) -6283 ENSMUSG00000111940.1 ENSMUSG00000111940 ENSMUST00000218322 Gm4478 processed_pseudogene Interval_3657 chr1 60449336 60450139 + 0 NA intron (ENSMUSG00000026782.15, intron 6 of 9) protein_coding-intron (ENSMUSG00000026782.15, intron 6 of 8) 39956 ENSMUSG00000026782.15 ENSMUSG00000026782 ENSMUST00000190158 Abi2 protein_coding Interval_166214 chr9 57547323 57548495 + 0 NA TTS (ENSMUSG00000032306.14) protein_coding-TTS (ENSMUSG00000032306.14) 4800 ENSMUSG00000032306.14 ENSMUSG00000032306 ENSMUST00000124593 Mpi protein_coding Interval_88513 chr2 5747515 5747916 + 0 NA Intergenic Intergenic -33212 ENSMUSG00000039145.16 ENSMUSG00000039145 ENSMUST00000155927 Camk1d protein_coding Interval_73389 chr17 36933171 36933538 + 0 NA TTS (ENSMUSG00000092239.1) antisense-TTS (ENSMUSG00000092239.1) 9562 ENSMUSG00000092239.1 ENSMUSG00000092239 ENSMUST00000174380 1700031A10Rik antisense Interval_79226 chr18 26014957 26015905 + 0 NA intron (ENSMUSG00000117604.1, intron 1 of 13) processed_transcript-intron (ENSMUSG00000117604.1, intron 1 of 13) 7874 ENSMUSG00000117604.1 ENSMUSG00000117604 ENSMUST00000234272 Gm33228 processed_transcript Interval_135435 chr6 39360759 39361079 + 0 NA intron (ENSMUSG00000029924.12, intron 5 of 7) protein_coding-intron (ENSMUSG00000029924.12, intron 3 of 14) 16738 ENSMUSG00000029924.12 ENSMUSG00000029924 ENSMUST00000202785 Slc37a3 protein_coding Interval_104340 chr3 63675786 63677304 + 0 NA Intergenic Intergenic -93667 ENSMUSG00000088360.1 ENSMUSG00000088360 ENSMUST00000157735 Gm23500 snRNA Interval_106302 chr3 95251135 95251673 + 0 NA promoter-TSS (ENSMUSG00000028115.16) protein_coding-promoter-TSS (ENSMUSG00000028115.16) -2825 ENSMUSG00000028115.16 ENSMUSG00000028115 ENSMUST00000176070 Bnipl protein_coding Interval_93328 chr2 71974388 71974604 + 0 NA Intergenic Intergenic 18443 ENSMUSG00000087345.1 ENSMUSG00000087345 ENSMUST00000133981 Gm13746 lincRNA Interval_159453 chr8 94822165 94823378 + 0 NA TTS (ENSMUSG00000031781.14) protein_coding-TTS (ENSMUSG00000031781.14) 12318 ENSMUSG00000031780.2 ENSMUSG00000031780 ENSMUST00000034232 Ccl17 protein_coding Interval_52045 chr14 34822831 34823531 + 0 NA intron (ENSMUSG00000041078.7, intron 2 of 15) protein_coding-intron (ENSMUSG00000041078.7, intron 2 of 15) -53126 ENSMUSG00000115109.1 ENSMUSG00000115109 ENSMUST00000228194 Gm49032 lincRNA Interval_71424 chr17 23667910 23668267 + 0 NA TTS (ENSMUSG00000041319.14) protein_coding-TTS (ENSMUSG00000041319.14) 1962 ENSMUSG00000043782.9 ENSMUSG00000043782 ENSMUST00000233930 Bicdl2 protein_coding Interval_147910 chr7 75455152 75456361 + 0 NA promoter-TSS (ENSMUSG00000066406.16) protein_coding-promoter-TSS (ENSMUSG00000066406.16) -26243 ENSMUSG00000108542.1 ENSMUSG00000108542 ENSMUST00000206671 Gm44834 TEC Interval_106619 chr3 97823614 97825188 + 0 NA exon (ENSMUSG00000038170.15, exon 1 of 2) protein_coding-exon (ENSMUSG00000038170.15, exon 1 of 2) 220 ENSMUSG00000038170.15 ENSMUSG00000038170 ENSMUST00000163531 Pde4dip protein_coding Interval_15263 chr10 43918900 43919428 + 0 NA intron (ENSMUSG00000019864.14, intron 4 of 8) protein_coding-intron (ENSMUSG00000019864.14, intron 4 of 8) -23623 ENSMUSG00000019863.7 ENSMUSG00000019863 ENSMUST00000217541 Qrsl1 protein_coding Interval_17885 chr10 80589872 80591056 + 0 NA promoter-TSS (ENSMUSG00000003346.14) protein_coding-promoter-TSS (ENSMUSG00000003346.14) -140 ENSMUSG00000003346.14 ENSMUSG00000003346 ENSMUST00000187646 Abhd17a protein_coding Interval_18690 chr10 89371170 89371384 + 0 NA Intergenic Intergenic 62565 ENSMUSG00000074802.11 ENSMUSG00000074802 ENSMUST00000219073 Gas2l3 protein_coding Interval_170075 chr9 104251971 104252535 + 0 NA intron (ENSMUSG00000032560.14, intron 1 of 3) protein_coding-intron (ENSMUSG00000032560.14, intron 1 of 55) -9852 ENSMUSG00000104040.1 ENSMUSG00000104040 ENSMUST00000192580 Gm37563 TEC Interval_32015 chr11 104460834 104462342 + 0 NA intron (ENSMUSG00000018412.16, intron 1 of 2) protein_coding-intron (ENSMUSG00000018412.16, intron 2 of 14) 6403 ENSMUSG00000018412.16 ENSMUSG00000018412 ENSMUST00000134266 Kansl1 protein_coding Interval_155442 chr8 33620936 33621632 + 0 NA exon (ENSMUSG00000052906.7, exon 8 of 8) protein_coding-exon (ENSMUSG00000052906.7, exon 8 of 8) 14970 ENSMUSG00000052906.7 ENSMUSG00000052906 ENSMUST00000210807 Ubxn8 protein_coding Interval_31972 chr11 104257586 104259363 + 0 NA intron (ENSMUSG00000085134.1, intron 1 of 4) protein_coding-intron (ENSMUSG00000018411.17, intron 1 of 11) 887 ENSMUSG00000085134.1 ENSMUSG00000085134 ENSMUST00000137561 Gm11659 antisense Interval_79033 chr18 24085302 24086264 + 0 NA Intergenic Intergenic -3859 ENSMUSG00000117500.1 ENSMUSG00000117500 ENSMUST00000234749 Gm18085 processed_pseudogene Interval_64591 chr16 13552663 13553783 + 0 NA intron (ENSMUSG00000022685.9, intron 23 of 23) protein_coding-intron (ENSMUSG00000022685.9, intron 22 of 23) -21672 ENSMUSG00000077488.1 ENSMUSG00000077488 ENSMUST00000104300 Gm25276 snoRNA Interval_15717 chr10 54558710 54559282 + 0 NA Intergenic Intergenic 112708 ENSMUSG00000112882.1 ENSMUSG00000112882 ENSMUST00000218122 Gm47970 processed_pseudogene Interval_48498 chr13 99448551 99448794 + 0 NA intron (ENSMUSG00000052727.6, intron 2 of 6) protein_coding-intron (ENSMUSG00000052727.6, intron 2 of 6) -4205 ENSMUSG00000052727.6 ENSMUSG00000052727 ENSMUST00000223820 Map1b protein_coding Interval_154519 chr8 18898013 18899460 + 0 NA intron (ENSMUSG00000110530.1, intron 1 of 2) antisense-intron (ENSMUSG00000110530.1, intron 1 of 2) 3580 ENSMUSG00000110530.1 ENSMUSG00000110530 ENSMUST00000213002 Gm35934 antisense Interval_130578 chr5 128992181 128992397 + 0 NA intron (ENSMUSG00000029428.13, intron 5 of 7) protein_coding-intron (ENSMUSG00000029428.13, intron 5 of 10) 16257 ENSMUSG00000029428.13 ENSMUSG00000029428 ENSMUST00000199813 Stx2 protein_coding Interval_72468 chr17 29996041 29996295 + 0 NA Intergenic Intergenic 8523 ENSMUSG00000117371.1 ENSMUSG00000117371 ENSMUST00000233996 Gm50019 bidirectional_promoter_lncRNA Interval_110705 chr4 6638725 6639463 + 0 NA Intergenic Intergenic -4799 ENSMUSG00000077302.1 ENSMUSG00000077302 ENSMUST00000104114 Gm22473 snoRNA Interval_137665 chr6 78244525 78244720 + 0 NA Intergenic Intergenic 28744 ENSMUSG00000108045.1 ENSMUSG00000108045 ENSMUST00000075809 Gm5576 processed_pseudogene Interval_73865 chr17 44848642 44848868 + 0 NA intron (ENSMUSG00000038954.14, intron 2 of 2) protein_coding-intron (ENSMUSG00000038954.14, intron 2 of 11) 31540 ENSMUSG00000117326.1 ENSMUSG00000117326 ENSMUST00000233907 4930564C03Rik processed_pseudogene Interval_143680 chr7 14369985 14370435 + 0 NA promoter-TSS (ENSMUSG00000107673.1) unprocessed_pseudogene-promoter-TSS (ENSMUSG00000107673.1) -3 ENSMUSG00000107673.1 ENSMUSG00000107673 ENSMUST00000203723 Crs-ps unprocessed_pseudogene Interval_137042 chr6 66920970 66922867 + 0 NA intron (ENSMUSG00000036402.13, intron 2 of 3) protein_coding-intron (ENSMUSG00000036402.13, intron 2 of 4) 25027 ENSMUSG00000036402.13 ENSMUSG00000036402 ENSMUST00000204862 Gng12 protein_coding Interval_158017 chr8 78066201 78066369 + 0 NA Intergenic Intergenic 22275 ENSMUSG00000110382.1 ENSMUSG00000110382 ENSMUST00000209933 Gm29895 lincRNA Interval_13557 chr10 19591527 19592423 + 0 NA promoter-TSS (ENSMUSG00000020009.13) protein_coding-promoter-TSS (ENSMUSG00000020009.13) -87 ENSMUSG00000020009.13 ENSMUSG00000020009 ENSMUST00000168074 Ifngr1 protein_coding Interval_36935 chr12 55464029 55465209 + 0 NA Intergenic Intergenic 27191 ENSMUSG00000021025.8 ENSMUSG00000021025 ENSMUST00000219869 Nfkbia protein_coding Interval_83361 chr18 84571884 84572174 + 0 NA intron (ENSMUSG00000048410.17, intron 1 of 8) protein_coding-intron (ENSMUSG00000048410.17, intron 1 of 8) -53716 ENSMUSG00000117676.1 ENSMUSG00000117676 ENSMUST00000236074 Gm50314 antisense Interval_2525 chr1 39956626 39958078 + 0 NA intron (ENSMUSG00000026074.15, intron 2 of 31) protein_coding-intron (ENSMUSG00000026074.15, intron 2 of 30) 56173 ENSMUSG00000026074.15 ENSMUSG00000026074 ENSMUST00000191657 Map4k4 protein_coding Interval_47370 chr13 82121048 82121257 + 0 NA intron (ENSMUSG00000114461.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000114461.1, intron 1 of 2) 31395 ENSMUSG00000114461.1 ENSMUSG00000114461 ENSMUST00000224753 Gm48155 lincRNA Interval_38443 chr12 79060695 79061126 + 0 NA intron (ENSMUSG00000060716.7, intron 7 of 28) protein_coding-intron (ENSMUSG00000060716.7, intron 7 of 28) 25274 ENSMUSG00000060716.7 ENSMUSG00000060716 ENSMUST00000219946 Plekhh1 protein_coding Interval_16080 chr10 60599654 60599850 + 0 NA intron (ENSMUSG00000012819.15, intron 4 of 7) protein_coding-intron (ENSMUSG00000012819.15, intron 2 of 66) 153031 ENSMUSG00000020100.15 ENSMUSG00000020100 ENSMUST00000144989 Slc29a3 protein_coding Interval_114012 chr4 62454060 62455617 + 0 NA intron (ENSMUSG00000028391.16, intron 3 of 3) protein_coding-intron (ENSMUSG00000028391.16, intron 10 of 10) 16058 ENSMUSG00000028391.16 ENSMUSG00000028391 ENSMUST00000135811 Wdr31 protein_coding Interval_103493 chr3 44857564 44858082 + 0 NA Intergenic Intergenic -125377 ENSMUSG00000088535.1 ENSMUSG00000088535 ENSMUST00000157910 Gm24997 snRNA Interval_93088 chr2 70025909 70027044 + 0 NA Intergenic Intergenic -12435 ENSMUSG00000086132.1 ENSMUSG00000086132 ENSMUST00000140978 Gm13631 processed_transcript Interval_30850 chr11 96867251 96867881 + 0 NA intron (ENSMUSG00000087117.8, intron 1 of 2) processed_transcript-intron (ENSMUSG00000087117.8, intron 1 of 2) -2629 ENSMUSG00000083651.1 ENSMUSG00000083651 ENSMUST00000119349 Gm11524 processed_pseudogene Interval_125413 chr5 66815940 66817391 + 0 NA intron (ENSMUSG00000037736.20, intron 1 of 31) protein_coding-intron (ENSMUSG00000037736.20, intron 1 of 25) -73701 ENSMUSG00000082420.2 ENSMUSG00000082420 ENSMUST00000121056 Gm6517 processed_pseudogene Interval_48956 chr13 105792819 105793936 + 0 NA Intergenic Intergenic 40301 ENSMUSG00000114671.1 ENSMUSG00000114671 ENSMUST00000225365 Gm48211 processed_pseudogene Interval_148418 chr7 81137239 81138333 + 0 NA intron (ENSMUSG00000025726.11, intron 8 of 17) protein_coding-intron (ENSMUSG00000025726.11, intron 8 of 17) 22936 ENSMUSG00000025726.11 ENSMUSG00000025726 ENSMUST00000119083 Slc28a1 protein_coding Interval_93536 chr2 73904627 73905244 + 0 NA Intergenic Intergenic 6356 ENSMUSG00000018770.9 ENSMUSG00000018770 ENSMUST00000155474 Atp5g3 protein_coding Interval_94586 chr2 92447212 92448037 + 0 NA Intergenic Intergenic 12085 ENSMUSG00000049922.8 ENSMUSG00000049922 ENSMUST00000136718 Slc35c1 protein_coding Interval_67402 chr16 48341955 48342192 + 0 NA Intergenic Intergenic -26569 ENSMUSG00000116889.1 ENSMUSG00000116889 ENSMUST00000231810 Gm49771 processed_pseudogene Interval_148844 chr7 89237628 89238293 + 0 NA intron (ENSMUSG00000039428.11, intron 3 of 5) protein_coding-intron (ENSMUSG00000039428.11, intron 5 of 14) -20863 ENSMUSG00000109576.1 ENSMUSG00000109576 ENSMUST00000208963 Gm44704 TEC Interval_5626 chr1 90348149 90348435 + 0 NA Intergenic Intergenic 20980 ENSMUSG00000098368.1 ENSMUSG00000098368 ENSMUST00000184315 Gm27648 rRNA Interval_24312 chr11 32286128 32288016 + 0 NA promoter-TSS (ENSMUSG00000073063.3) protein_coding-promoter-TSS (ENSMUSG00000073063.3) 71 ENSMUSG00000073063.3 ENSMUSG00000073063 ENSMUST00000151724 Hbq1b protein_coding Interval_110977 chr4 10993833 10994486 + 0 NA intron (ENSMUSG00000049969.3, intron 1 of 1) protein_coding-intron (ENSMUSG00000049969.3, intron 1 of 1) 13768 ENSMUSG00000049969.3 ENSMUSG00000049969 ENSMUST00000137891 Plekhf2 protein_coding Interval_48786 chr13 103238548 103239178 + 0 NA intron (ENSMUSG00000034751.17, intron 1 of 3) protein_coding-intron (ENSMUSG00000034751.17, intron 1 of 4) -78025 ENSMUSG00000091577.2 ENSMUSG00000091577 ENSMUST00000167849 Gm6211 transcribed_processed_pseudogene Interval_49117 chr13 108188124 108188551 + 0 NA intron (ENSMUSG00000021694.18, intron 11 of 11) protein_coding-intron (ENSMUSG00000021694.18, intron 11 of 11) -26073 ENSMUSG00000021696.9 ENSMUSG00000021696 ENSMUST00000225550 Elovl7 protein_coding Interval_71909 chr17 26946365 26947459 + 0 NA intron (ENSMUSG00000067629.13, intron 3 of 18) protein_coding-intron (ENSMUSG00000067629.13, intron 3 of 19) 1207 ENSMUSG00000093118.1 ENSMUSG00000093118 ENSMUST00000175377 Mir3083 miRNA Interval_155413 chr8 33403861 33404068 + 0 NA intron (ENSMUSG00000049184.6, intron 1 of 1) protein_coding-intron (ENSMUSG00000049184.6, intron 1 of 1) 17639 ENSMUSG00000049184.6 ENSMUSG00000049184 ENSMUST00000078058 Purg protein_coding Interval_39729 chr12 95703668 95703897 + 0 NA intron (ENSMUSG00000047414.6, intron 1 of 1) protein_coding-intron (ENSMUSG00000047414.6, intron 1 of 1) 8425 ENSMUSG00000047414.6 ENSMUSG00000047414 ENSMUST00000110117 Flrt2 protein_coding Interval_114913 chr4 86902319 86902606 + 0 NA intron (ENSMUSG00000038007.14, intron 4 of 5) protein_coding-intron (ENSMUSG00000038007.14, intron 4 of 5) -28229 ENSMUSG00000038007.14 ENSMUSG00000038007 ENSMUST00000135874 Acer2 protein_coding Interval_33201 chr11 115192131 115192794 + 0 NA intron (ENSMUSG00000045980.13, intron 2 of 8) protein_coding-intron (ENSMUSG00000045980.13, intron 2 of 9) 4911 ENSMUSG00000045980.13 ENSMUSG00000045980 ENSMUST00000156230 Tmem104 protein_coding Interval_43567 chr13 33645344 33645574 + 0 NA Intergenic Intergenic 3834 ENSMUSG00000083042.1 ENSMUSG00000083042 ENSMUST00000120908 Gm11388 unprocessed_pseudogene Interval_137772 chr6 82270939 82271537 + 0 NA Intergenic Intergenic 29064 ENSMUSG00000108224.1 ENSMUSG00000108224 ENSMUST00000204563 Gm31861 processed_pseudogene Interval_100531 chr2 169970318 169971033 + 0 NA intron (ENSMUSG00000047907.11, intron 1 of 1) protein_coding-intron (ENSMUSG00000047907.11, intron 1 of 1) -7488 ENSMUSG00000103935.1 ENSMUSG00000103935 ENSMUST00000194482 AY702102 TEC Interval_72509 chr17 30286806 30288754 + 0 NA intron (ENSMUSG00000062202.14, intron 6 of 7) protein_coding-intron (ENSMUSG00000062202.14, intron 8 of 11) -23299 ENSMUSG00000089222.1 ENSMUSG00000089222 ENSMUST00000158597 Gm25049 snRNA Interval_81141 chr18 54846814 54847006 + 0 NA Intergenic Intergenic 8865 ENSMUSG00000117825.1 ENSMUSG00000117825 ENSMUST00000237299 Gm50365 processed_pseudogene Interval_140181 chr6 115043946 115045229 + 0 NA Intergenic Intergenic -6732 ENSMUSG00000030316.13 ENSMUSG00000030316 ENSMUST00000144445 Tamm41 protein_coding Interval_159805 chr8 103873639 103874450 + 0 NA Intergenic Intergenic -197105 ENSMUSG00000110019.1 ENSMUSG00000110019 ENSMUST00000211125 Gm8748 processed_pseudogene Interval_144208 chr7 19956246 19957358 + 0 NA Intergenic Intergenic 3019 ENSMUSG00000070778.5 ENSMUSG00000070778 ENSMUST00000094754 Rpl7a-ps8 processed_pseudogene Interval_152203 chr7 130631556 130632981 + 0 NA intron (ENSMUSG00000030852.18, intron 4 of 6) protein_coding-intron (ENSMUSG00000030852.18, intron 2 of 20) 22124 ENSMUSG00000109225.1 ENSMUSG00000109225 ENSMUST00000207466 4930513N20Rik TEC Interval_11431 chr1 181899888 181902162 + 0 NA exon (ENSMUSG00000022995.16, exon 14 of 14) protein_coding-exon (ENSMUSG00000022995.16, exon 14 of 14) -47836 ENSMUSG00000056699.7 ENSMUSG00000056699 ENSMUST00000070987 Gm5533 lincRNA Interval_60088 chr15 65142887 65143319 + 0 NA Intergenic Intergenic -52236 ENSMUSG00000115672.1 ENSMUSG00000115672 ENSMUST00000227660 Gm7814 processed_pseudogene Interval_158557 chr8 84454288 84454903 + 0 NA intron (ENSMUSG00000034656.18, intron 3 of 48) protein_coding-intron (ENSMUSG00000034656.18, intron 1 of 46) -74014 ENSMUSG00000064392.1 ENSMUSG00000064392 ENSMUST00000082458 Gm23626 snoRNA Interval_169317 chr9 96353186 96354306 + 0 NA intron (ENSMUSG00000032412.8, intron 1 of 6) protein_coding-intron (ENSMUSG00000032412.8, intron 1 of 6) -10165 ENSMUSG00000032412.8 ENSMUSG00000032412 ENSMUST00000187341 Atp1b3 protein_coding Interval_130642 chr5 129393408 129394471 + 0 NA Intergenic Intergenic 29819 ENSMUSG00000104681.1 ENSMUSG00000104681 ENSMUST00000199076 Gm43001 lincRNA Interval_117951 chr4 127289727 127290164 + 0 NA Intergenic Intergenic -5112 ENSMUSG00000087987.1 ENSMUSG00000087987 ENSMUST00000157362 Gm22221 snRNA Interval_38009 chr12 73930148 73930378 + 0 NA intron (ENSMUSG00000087700.2, intron 5 of 6) protein_coding-intron (ENSMUSG00000021109.13, intron 4 of 14) -7390 ENSMUSG00000114046.1 ENSMUSG00000114046 ENSMUST00000221833 Snapc1l protein_coding Interval_83863 chr19 5163983 5165253 + 0 NA intron (ENSMUSG00000024855.10, intron 2 of 22) protein_coding-intron (ENSMUSG00000024855.10, intron 2 of 23) -21119 ENSMUSG00000024855.10 ENSMUSG00000024855 ENSMUST00000236470 Pacs1 protein_coding Interval_132464 chr5 145119546 145120102 + 0 NA intron (ENSMUSG00000029622.16, intron 1 of 2) protein_coding-intron (ENSMUSG00000029622.16, intron 1 of 9) 5512 ENSMUSG00000029622.16 ENSMUSG00000029622 ENSMUST00000144375 Arpc1b protein_coding Interval_18877 chr10 91883100 91883533 + 0 NA Intergenic Intergenic -5513 ENSMUSG00000111657.1 ENSMUSG00000111657 ENSMUST00000217529 Gm31592 lincRNA Interval_89484 chr2 20942562 20944506 + 0 NA promoter-TSS (ENSMUSG00000036591.16) protein_coding-promoter-TSS (ENSMUSG00000036591.16) -12145 ENSMUSG00000085206.1 ENSMUSG00000085206 ENSMUST00000124322 Gm13380 sense_intronic Interval_100408 chr2 168870560 168870889 + 0 NA Intergenic Intergenic 11444 ENSMUSG00000077761.1 ENSMUSG00000077761 ENSMUST00000104573 Gm25214 snoRNA Interval_14234 chr10 29287778 29288803 + 0 NA Intergenic Intergenic -24991 ENSMUSG00000019883.11 ENSMUSG00000019883 ENSMUST00000161426 Echdc1 protein_coding Interval_156787 chr8 59677474 59678966 + 0 NA Intergenic Intergenic 118905 ENSMUSG00000088657.1 ENSMUSG00000088657 ENSMUST00000158032 Gm24847 snRNA Interval_44780 chr13 48572046 48572514 + 0 NA TTS (ENSMUSG00000095214.1) snoRNA-TTS (ENSMUSG00000095214.1) 104 ENSMUSG00000095214.1 ENSMUSG00000095214 ENSMUST00000104502 Gm25232 snoRNA Interval_98017 chr2 146763350 146764063 + 0 NA Intergenic Intergenic -8001 ENSMUSG00000080870.1 ENSMUSG00000080870 ENSMUST00000119851 Gm14111 processed_pseudogene Interval_51627 chr14 30888172 30888768 + 0 NA intron (ENSMUSG00000021922.17, intron 2 of 21) protein_coding-intron (ENSMUSG00000021922.17, intron 2 of 21) 9270 ENSMUSG00000042485.7 ENSMUSG00000042485 ENSMUST00000040715 Mustn1 protein_coding Interval_107949 chr3 117222254 117222441 + 0 NA TTS (ENSMUSG00000105914.1) processed_pseudogene-TTS (ENSMUSG00000105914.1) 1255 ENSMUSG00000105914.1 ENSMUSG00000105914 ENSMUST00000198592 Gm19243 processed_pseudogene Interval_165660 chr9 50746031 50746840 + 0 NA promoter-TSS (ENSMUSG00000032062.3) protein_coding-promoter-TSS (ENSMUSG00000032062.3) 86 ENSMUSG00000032062.3 ENSMUSG00000032062 ENSMUST00000215877 2310030G06Rik protein_coding Interval_136545 chr6 55434147 55434677 + 0 NA Intergenic Intergenic -25824 ENSMUSG00000029778.12 ENSMUSG00000029778 ENSMUST00000165786 Adcyap1r1 protein_coding Interval_168276 chr9 78374064 78375799 + 0 NA Intergenic Intergenic 3794 ENSMUSG00000032346.7 ENSMUSG00000032346 ENSMUST00000034900 Ooep protein_coding Interval_365 chr1 4590837 4591512 + 0 NA Intergenic Intergenic -4922 ENSMUSG00000104328.1 ENSMUSG00000104328 ENSMUST00000195771 Gm37323 lincRNA Interval_65957 chr16 30522276 30523613 + 0 NA intron (ENSMUSG00000022537.18, intron 4 of 6) protein_coding-intron (ENSMUSG00000022537.18, intron 10 of 11) 20553 ENSMUSG00000022537.18 ENSMUSG00000022537 ENSMUST00000153380 Tmem44 protein_coding Interval_18130 chr10 82853059 82853916 + 0 NA promoter-TSS (ENSMUSG00000112889.1) TEC-promoter-TSS (ENSMUSG00000112889.1) -840 ENSMUSG00000112889.1 ENSMUSG00000112889 ENSMUST00000220118 Gm47073 TEC Interval_163605 chr9 22485340 22487107 + 0 NA intron (ENSMUSG00000035919.16, intron 2 of 22) protein_coding-intron (ENSMUSG00000035919.16, intron 1 of 21) -5777 ENSMUSG00000090067.1 ENSMUSG00000090067 ENSMUST00000160362 Gm2976 processed_pseudogene Interval_106300 chr3 95248545 95248872 + 0 NA promoter-TSS (ENSMUSG00000028115.16) protein_coding-promoter-TSS (ENSMUSG00000028115.16) -129 ENSMUSG00000028115.16 ENSMUSG00000028115 ENSMUST00000176070 Bnipl protein_coding Interval_64325 chr16 10517434 10517828 + 0 NA intron (ENSMUSG00000038055.12, intron 3 of 4) protein_coding-intron (ENSMUSG00000022504.10, intron 12 of 18) 25423 ENSMUSG00000038055.12 ENSMUSG00000038055 ENSMUST00000038281 Dexi protein_coding Interval_153205 chr7 142392961 142393875 + 0 NA Intergenic Intergenic -5599 ENSMUSG00000007891.16 ENSMUSG00000007891 ENSMUST00000153679 Ctsd protein_coding Interval_130050 chr5 123929997 123931148 + 0 NA promoter-TSS (ENSMUSG00000061882.12) protein_coding-promoter-TSS (ENSMUSG00000061882.12) 3154 ENSMUSG00000105875.1 ENSMUSG00000105875 ENSMUST00000166129 Gm43518 protein_coding Interval_97283 chr2 132952014 132952422 + 0 NA Intergenic Intergenic -6224 ENSMUSG00000086478.1 ENSMUSG00000086478 ENSMUST00000147678 Gm14102 lincRNA Interval_102250 chr3 20004065 20004274 + 0 NA intron (ENSMUSG00000027615.14, intron 5 of 7) protein_coding-intron (ENSMUSG00000003617.16, intron 18 of 19) 31125 ENSMUSG00000027615.14 ENSMUSG00000027615 ENSMUST00000133094 Hps3 protein_coding Interval_77299 chr17 87891368 87892195 + 0 NA Intergenic Intergenic -29196 ENSMUSG00000093922.1 ENSMUSG00000093922 ENSMUST00000179601 Rpl36-ps4 protein_coding Interval_110526 chr4 3590600 3590822 + 0 NA intron (ENSMUSG00000028233.6, intron 5 of 12) protein_coding-intron (ENSMUSG00000028233.6, intron 5 of 12) -14926 ENSMUSG00000028233.6 ENSMUSG00000028233 ENSMUST00000146315 Tgs1 protein_coding Interval_14220 chr10 29087440 29087897 + 0 NA Intergenic Intergenic -52215 ENSMUSG00000111542.1 ENSMUSG00000111542 ENSMUST00000213962 Gm30619 unprocessed_pseudogene Interval_75854 chr17 71869144 71870474 + 0 NA exon (ENSMUSG00000055471.7, exon 29 of 29) protein_coding-exon (ENSMUSG00000055471.7, exon 29 of 29) 41302 ENSMUSG00000024059.10 ENSMUSG00000024059 ENSMUST00000230290 Clip4 protein_coding Interval_85110 chr19 22949605 22949793 + 0 NA intron (ENSMUSG00000052387.16, intron 21 of 24) protein_coding-intron (ENSMUSG00000052387.16, intron 22 of 26) -111755 ENSMUSG00000118155.1 ENSMUSG00000118155 ENSMUST00000235686 Gm50136 lincRNA Interval_97696 chr2 142881184 142881383 + 0 NA intron (ENSMUSG00000038844.10, intron 1 of 26) protein_coding-intron (ENSMUSG00000038844.10, intron 1 of 25) 20236 ENSMUSG00000038844.10 ENSMUSG00000038844 ENSMUST00000212106 Kif16b protein_coding Interval_7869 chr1 134289774 134291296 + 0 NA intron (ENSMUSG00000026459.5, intron 1 of 2) protein_coding-intron (ENSMUSG00000026459.5, intron 1 of 2) 546 ENSMUSG00000026459.5 ENSMUSG00000026459 ENSMUST00000027730 Myog protein_coding Interval_68303 chr16 72813954 72814626 + 0 NA intron (ENSMUSG00000022883.11, intron 2 of 28) protein_coding-intron (ENSMUSG00000022883.11, intron 2 of 28) -162059 ENSMUSG00000022883.11 ENSMUSG00000022883 ENSMUST00000232432 Robo1 protein_coding Interval_56463 chr14 118922577 118923209 + 0 NA TTS (ENSMUSG00000042156.16) protein_coding-TTS (ENSMUSG00000042156.16) -15083 ENSMUSG00000022136.8 ENSMUSG00000022136 ENSMUST00000022734 Dnajc3 protein_coding Interval_36878 chr12 54889066 54890774 + 0 NA Intergenic Intergenic -27122 ENSMUSG00000062929.8 ENSMUSG00000062929 ENSMUST00000223095 Cfl2 protein_coding Interval_141274 chr6 126773648 126773840 + 0 NA Intergenic Intergenic -33070 ENSMUSG00000038077.7 ENSMUSG00000038077 ENSMUST00000112242 Kcna6 protein_coding Interval_120749 chr4 150419523 150420085 + 0 NA intron (ENSMUSG00000039852.17, intron 1 of 3) protein_coding-intron (ENSMUSG00000039852.17, intron 2 of 22) 98611 ENSMUSG00000089292.1 ENSMUSG00000089292 ENSMUST00000158667 Gm23209 snRNA Interval_125828 chr5 74792188 74792699 + 0 NA Intergenic Intergenic 42561 ENSMUSG00000106987.1 ENSMUSG00000106987 ENSMUST00000202942 Gm42575 lincRNA Interval_59270 chr15 50460403 50460595 + 0 NA Intergenic Intergenic 173601 ENSMUSG00000115478.1 ENSMUSG00000115478 ENSMUST00000227182 Gm49198 lincRNA Interval_55970 chr14 103486284 103486509 + 0 NA intron (ENSMUSG00000115762.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000115762.1, intron 1 of 2) 22345 ENSMUSG00000115762.1 ENSMUSG00000115762 ENSMUST00000228400 Gm34907 lincRNA Interval_73393 chr17 36946355 36947780 + 0 NA exon (ENSMUSG00000036492.12, exon 4 of 4) protein_coding-exon (ENSMUSG00000036492.12, exon 4 of 4) 1989 ENSMUSG00000036492.12 ENSMUSG00000036492 ENSMUST00000174669 Rnf39 protein_coding Interval_73467 chr17 37637416 37637711 + 0 NA Intergenic Intergenic -10364 ENSMUSG00000061336.3 ENSMUSG00000061336 ENSMUST00000072265 Olfr116 protein_coding Interval_1051 chr1 14484222 14484702 + 0 NA Intergenic Intergenic -179892 ENSMUSG00000025932.14 ENSMUSG00000025932 ENSMUST00000185329 Eya1 protein_coding Interval_37200 chr12 59606388 59607142 + 0 NA Intergenic Intergenic 39401 ENSMUSG00000112851.1 ENSMUSG00000112851 ENSMUST00000219830 Gm7727 processed_pseudogene Interval_68618 chr16 81489850 81490102 + 0 NA intron (ENSMUSG00000022762.18, intron 1 of 3) protein_coding-intron (ENSMUSG00000022762.18, intron 8 of 15) 24353 ENSMUSG00000022762.18 ENSMUSG00000022762 ENSMUST00000232550 Ncam2 protein_coding Interval_49586 chr13 113241267 113243206 + 0 NA Intergenic Intergenic 32577 ENSMUSG00000042379.8 ENSMUSG00000042379 ENSMUST00000038144 Esm1 protein_coding Interval_82566 chr18 75193423 75195570 + 0 NA intron (ENSMUSG00000035765.10, intron 13 of 16) protein_coding-intron (ENSMUSG00000035765.10, intron 13 of 16) -11682 ENSMUSG00000094153.2 ENSMUSG00000094153 ENSMUST00000179328 Gm8807 processed_pseudogene Interval_64859 chr16 16646959 16647155 + 0 NA Intergenic Intergenic 25453 ENSMUSG00000108454.1 ENSMUSG00000108454 ENSMUST00000206799 Gm44932 unprocessed_pseudogene Interval_26331 chr11 56307014 56307771 + 0 NA Intergenic Intergenic -44152 ENSMUSG00000065635.1 ENSMUSG00000065635 ENSMUST00000083701 Gm24253 snoRNA Interval_52067 chr14 35031153 35031347 + 0 NA intron (ENSMUSG00000041078.7, intron 4 of 15) protein_coding-intron (ENSMUSG00000041078.7, intron 4 of 15) 136641 ENSMUSG00000065481.1 ENSMUSG00000065481 ENSMUST00000083547 Mir346 miRNA Interval_69585 chr16 94442954 94443202 + 0 NA promoter-TSS (ENSMUSG00000040785.19) protein_coding-promoter-TSS (ENSMUSG00000040785.19) 14005 ENSMUSG00000075829.1 ENSMUSG00000075829 ENSMUST00000101881 Gm23692 snRNA Interval_39143 chr12 85411072 85411770 + 0 NA Intergenic Intergenic 24828 ENSMUSG00000113940.1 ENSMUSG00000113940 ENSMUST00000220805 Gm40477 lincRNA Interval_16635 chr10 66683932 66684612 + 0 NA Intergenic Intergenic 7343 ENSMUSG00000112247.1 ENSMUSG00000112247 ENSMUST00000218242 Gm47894 processed_pseudogene Interval_15604 chr10 52262202 52262483 + 0 NA intron (ENSMUSG00000019891.15, intron 2 of 2) protein_coding-intron (ENSMUSG00000019891.15, intron 2 of 10) 28705 ENSMUSG00000019891.15 ENSMUSG00000019891 ENSMUST00000218582 Dcbld1 protein_coding Interval_30516 chr11 94881015 94881445 + 0 NA Intergenic Intergenic -19471 ENSMUSG00000043522.8 ENSMUSG00000043522 ENSMUST00000124176 A430060F13Rik unprocessed_pseudogene Interval_128224 chr5 111860541 111860750 + 0 NA Intergenic Intergenic 67258 ENSMUSG00000105376.4 ENSMUSG00000105376 ENSMUST00000200641 Gm36535 lincRNA Interval_21524 chr10 129147784 129148746 + 0 NA Intergenic Intergenic -9267 ENSMUSG00000047868.6 ENSMUSG00000047868 ENSMUST00000062314 Olfr770 protein_coding Interval_87850 chr19 56540205 56540444 + 0 NA exon (ENSMUSG00000025077.13, exon 4 of 8) protein_coding-exon (ENSMUSG00000025077.13, exon 4 of 8) -2942 ENSMUSG00000025077.13 ENSMUSG00000025077 ENSMUST00000182059 Dclre1a protein_coding Interval_57679 chr15 15088861 15090013 + 0 NA Intergenic Intergenic -48750 ENSMUSG00000115208.1 ENSMUSG00000115208 ENSMUST00000226940 Gm49118 processed_pseudogene Interval_157038 chr8 64711588 64711838 + 0 NA promoter-TSS (ENSMUSG00000110368.1) lincRNA-promoter-TSS (ENSMUSG00000110368.1) -637 ENSMUSG00000110368.1 ENSMUSG00000110368 ENSMUST00000210776 Gm45518 lincRNA Interval_37043 chr12 56829482 56829756 + 0 NA intron (ENSMUSG00000035472.14, intron 4 of 10) protein_coding-intron (ENSMUSG00000035472.14, intron 3 of 9) -136655 ENSMUSG00000089894.2 ENSMUSG00000089894 ENSMUST00000159874 Gm15524 antisense Interval_39380 chr12 87002627 87002847 + 0 NA Intergenic Intergenic -18902 ENSMUSG00000048483.6 ENSMUSG00000048483 ENSMUST00000095521 Zdhhc22 protein_coding Interval_153020 chr7 140920926 140923461 + 0 NA promoter-TSS (ENSMUSG00000038745.15) protein_coding-promoter-TSS (ENSMUSG00000038745.15) 1122 ENSMUSG00000038745.15 ENSMUSG00000038745 ENSMUST00000183761 Nlrp6 protein_coding Interval_151738 chr7 126348493 126349113 + 0 NA intron (ENSMUSG00000108417.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000108417.1, intron 1 of 1) 2794 ENSMUSG00000108417.1 ENSMUSG00000108417 ENSMUST00000205858 Gm30928 lincRNA Interval_130682 chr5 129724082 129725901 + 0 NA promoter-TSS (ENSMUSG00000029432.12) protein_coding-promoter-TSS (ENSMUSG00000029432.12) -110 ENSMUSG00000029432.12 ENSMUSG00000029432 ENSMUST00000135160 Nipsnap2 protein_coding Interval_39175 chr12 85617484 85618566 + 0 NA intron (ENSMUSG00000034271.16, intron 2 of 3) protein_coding-intron (ENSMUSG00000034271.16, intron 2 of 3) 15803 ENSMUSG00000034271.16 ENSMUSG00000034271 ENSMUST00000222689 Jdp2 protein_coding Interval_12964 chr10 8792496 8793866 + 0 NA intron (ENSMUSG00000015305.6, intron 4 of 19) protein_coding-intron (ENSMUSG00000015305.6, intron 4 of 19) 30966 ENSMUSG00000065692.1 ENSMUSG00000065692 ENSMUST00000083758 Gm25410 snoRNA Interval_31605 chr11 101657596 101659355 + 0 NA TTS (ENSMUSG00000065944.1) snRNA-TTS (ENSMUSG00000065944.1) 237 ENSMUSG00000065944.1 ENSMUSG00000065944 ENSMUST00000084010 Rnu2-10 snRNA Interval_84648 chr19 14644711 14646005 + 0 NA Intergenic Intergenic -13309 ENSMUSG00000103488.1 ENSMUSG00000103488 ENSMUST00000193515 Gm37997 TEC Interval_90402 chr2 30194079 30194925 + 0 NA promoter-TSS (ENSMUSG00000039648.14) protein_coding-promoter-TSS (ENSMUSG00000039648.14) 11287 ENSMUSG00000039648.14 ENSMUSG00000039648 ENSMUST00000149522 Kyat1 protein_coding Interval_117252 chr4 121022074 121022512 + 0 NA Intergenic Intergenic -17455 ENSMUSG00000028626.5 ENSMUSG00000028626 ENSMUST00000140119 Col9a2 protein_coding Interval_99388 chr2 160515734 160517283 + 0 NA Intergenic Intergenic -66849 ENSMUSG00000078955.3 ENSMUSG00000078955 ENSMUST00000128681 Gm14222 sense_intronic Interval_62547 chr15 94561560 94562225 + 0 NA intron (ENSMUSG00000059883.16, intron 9 of 11) protein_coding-intron (ENSMUSG00000059883.16, intron 9 of 11) 18239 ENSMUSG00000059883.16 ENSMUSG00000059883 ENSMUST00000109248 Irak4 protein_coding Interval_97465 chr2 136856861 136857047 + 0 NA Intergenic Intergenic 28725 ENSMUSG00000116563.1 ENSMUSG00000116563 ENSMUST00000231720 AL731706.2 protein_coding Interval_95504 chr2 110458225 110458574 + 0 NA Intergenic Intergenic -38780 ENSMUSG00000083320.1 ENSMUSG00000083320 ENSMUST00000121859 Gm13935 processed_pseudogene Interval_112549 chr4 43043972 43044387 + 0 NA intron (ENSMUSG00000036002.12, intron 1 of 7) protein_coding-intron (ENSMUSG00000036002.12, intron 1 of 8) -1863 ENSMUSG00000096974.2 ENSMUSG00000096974 ENSMUST00000211208 Gm26881 antisense Interval_37966 chr12 73448185 73450573 + 0 NA TTS (ENSMUSG00000113582.1) lincRNA-TTS (ENSMUSG00000113582.1) 1061 ENSMUSG00000113582.1 ENSMUSG00000113582 ENSMUST00000221762 Gm33929 lincRNA Interval_89009 chr2 14389983 14390182 + 0 NA TTS (ENSMUSG00000036949.16) protein_coding-TTS (ENSMUSG00000036949.16) 1570 ENSMUSG00000036949.16 ENSMUSG00000036949 ENSMUST00000133258 Slc39a12 protein_coding Interval_128251 chr5 112058712 112059260 + 0 NA Intergenic Intergenic -97251 ENSMUSG00000104538.1 ENSMUSG00000104538 ENSMUST00000197688 1700016B01Rik lincRNA Interval_34594 chr12 6437350 6438276 + 0 NA Intergenic Intergenic 60802 ENSMUSG00000111967.1 ENSMUSG00000111967 ENSMUST00000218888 Gm3678 processed_pseudogene Interval_132983 chr5 149096076 149096298 + 0 NA intron (ENSMUSG00000066551.12, intron 2 of 5) protein_coding-intron (ENSMUSG00000066551.12, intron 2 of 5) 27225 ENSMUSG00000097191.2 ENSMUSG00000097191 ENSMUST00000200718 Mm2pr lincRNA Interval_132076 chr5 142639906 142640561 + 0 NA intron (ENSMUSG00000029578.15, intron 2 of 5) protein_coding-intron (ENSMUSG00000029578.15, intron 2 of 11) 12535 ENSMUSG00000029578.15 ENSMUSG00000029578 ENSMUST00000143980 Wipi2 protein_coding Interval_17547 chr10 77652772 77653351 + 0 NA exon (ENSMUSG00000112007.1, exon 1 of 1) processed_pseudogene-exon (ENSMUSG00000112007.1, exon 1 of 1) 298 ENSMUSG00000112007.1 ENSMUSG00000112007 ENSMUST00000219972 Gm18119 processed_pseudogene Interval_82432 chr18 73962194 73963816 + 0 NA intron (ENSMUSG00000024558.12, intron 2 of 3) protein_coding-intron (ENSMUSG00000024558.12, intron 2 of 5) -54902 ENSMUSG00000090263.1 ENSMUSG00000090263 ENSMUST00000159260 D730045A05Rik lincRNA Interval_75017 chr17 60867868 60868356 + 0 NA Intergenic Intergenic 90766 ENSMUSG00000117036.1 ENSMUSG00000117036 ENSMUST00000233618 Gm33890 lincRNA Interval_96611 chr2 126520509 126521575 + 0 NA Intergenic Intergenic -21053 ENSMUSG00000060131.11 ENSMUSG00000060131 ENSMUST00000129187 Atp8b4 protein_coding Interval_79911 chr18 35858535 35859379 + 0 NA TTS (ENSMUSG00000046668.9) protein_coding-TTS (ENSMUSG00000046668.9) -3294 ENSMUSG00000117840.1 ENSMUSG00000117840 ENSMUST00000236587 Gm50399 lincRNA Interval_123184 chr5 30465972 30466516 + 0 NA intron (ENSMUSG00000029182.10, intron 1 of 3) protein_coding-intron (ENSMUSG00000029182.10, intron 1 of 3) 189 ENSMUSG00000029182.10 ENSMUSG00000029182 ENSMUST00000114743 Fam166c protein_coding Interval_107451 chr3 107793244 107794125 + 0 NA Intergenic Intergenic 11828 ENSMUSG00000106531.1 ENSMUSG00000106531 ENSMUST00000200491 Gm43233 processed_pseudogene Interval_140039 chr6 113576250 113576449 + 0 NA intron (ENSMUSG00000034023.16, intron 32 of 42) protein_coding-intron (ENSMUSG00000034023.16, intron 32 of 43) -11484 ENSMUSG00000107786.1 ENSMUSG00000107786 ENSMUST00000204537 Gm44232 processed_pseudogene Interval_2526 chr1 39963736 39964162 + 0 NA promoter-TSS (ENSMUSG00000026074.15) protein_coding-promoter-TSS (ENSMUSG00000026074.15) 62770 ENSMUSG00000026074.15 ENSMUSG00000026074 ENSMUST00000191657 Map4k4 protein_coding Interval_67558 chr16 50783453 50784336 + 0 NA exon (ENSMUSG00000092276.2, exon 2 of 2) lincRNA-exon (ENSMUSG00000092276.2, exon 2 of 2) 416 ENSMUSG00000092276.2 ENSMUSG00000092276 ENSMUST00000174511 1700116B05Rik lincRNA Interval_106249 chr3 94904418 94905278 + 0 NA Intergenic Intergenic 15575 ENSMUSG00000087720.1 ENSMUSG00000087720 ENSMUST00000157095 Gm26279 snRNA Interval_31610 chr11 101689605 101690153 + 0 NA Intergenic Intergenic 24338 ENSMUSG00000034936.2 ENSMUSG00000034936 ENSMUST00000039388 Arl4d protein_coding Interval_11634 chr1 183616387 183616639 + 0 NA Intergenic Intergenic 53001 ENSMUSG00000103451.1 ENSMUSG00000103451 ENSMUST00000195148 Gm33973 lincRNA Interval_589 chr1 8288413 8288657 + 0 NA Intergenic Intergenic 164956 ENSMUSG00000102647.1 ENSMUSG00000102647 ENSMUST00000192338 Gm38024 TEC Interval_94364 chr2 90529259 90530304 + 0 NA intron (ENSMUSG00000025314.16, intron 1 of 23) protein_coding-intron (ENSMUSG00000025314.16, intron 1 of 23) 50531 ENSMUSG00000085471.1 ENSMUSG00000085471 ENSMUST00000126953 4933423P22Rik antisense Interval_117726 chr4 125850398 125851330 + 0 NA Intergenic Intergenic 71553 ENSMUSG00000085562.7 ENSMUSG00000085562 ENSMUST00000144539 2610028E06Rik lincRNA Interval_30603 chr11 95393398 95393760 + 0 NA Intergenic Intergenic 8822 ENSMUSG00000020873.15 ENSMUSG00000020873 ENSMUST00000143090 Slc35b1 protein_coding Interval_132954 chr5 148942264 148944212 + 0 NA intron (ENSMUSG00000106892.1, intron 2 of 6) protein_coding-intron (ENSMUSG00000106892.1, intron 2 of 6) 5628 ENSMUSG00000085639.1 ENSMUSG00000085639 ENSMUST00000127763 Gm15410 antisense Interval_36835 chr12 54544653 54544953 + 0 NA Intergenic Intergenic -27724 ENSMUSG00000113947.1 ENSMUSG00000113947 ENSMUST00000223133 Gm10465 lincRNA Interval_46502 chr13 66661004 66661231 + 0 NA Intergenic Intergenic 12212 ENSMUSG00000074830.4 ENSMUSG00000074830 ENSMUST00000071320 Zfp640 transcribed_processed_pseudogene Interval_89203 chr2 18025933 18028970 + 0 NA TTS (ENSMUSG00000054057.2) protein_coding-TTS (ENSMUSG00000054057.2) 1420 ENSMUSG00000054057.2 ENSMUSG00000054057 ENSMUST00000151857 A930004D18Rik protein_coding Interval_43110 chr13 24242491 24242914 + 0 NA intron (ENSMUSG00000021338.17, intron 2 of 5) protein_coding-intron (ENSMUSG00000021338.17, intron 2 of 37) 46805 ENSMUSG00000081707.1 ENSMUSG00000081707 ENSMUST00000120579 Gm11343 processed_pseudogene Interval_21566 chr10 130003930 130005873 + 0 NA Intergenic Intergenic -7767 ENSMUSG00000048745.3 ENSMUSG00000048745 ENSMUST00000059244 Olfr820 protein_coding Interval_167604 chr9 71017459 71018952 + 0 NA Intergenic Intergenic -65979 ENSMUSG00000032207.10 ENSMUSG00000032207 ENSMUST00000215814 Lipc protein_coding Interval_70182 chr17 6004955 6006386 + 0 NA intron (ENSMUSG00000023805.17, intron 5 of 16) protein_coding-intron (ENSMUSG00000023805.17, intron 6 of 25) -2364 ENSMUSG00000023805.17 ENSMUSG00000023805 ENSMUST00000126881 Synj2 protein_coding Interval_68514 chr16 78316671 78317256 + 0 NA intron (ENSMUSG00000022865.14, intron 2 of 3) protein_coding-intron (ENSMUSG00000022865.14, intron 1 of 6) -8244 ENSMUSG00000022865.14 ENSMUSG00000022865 ENSMUST00000231251 Cxadr protein_coding Interval_277 KZ289068.1 483975 484967 + 0 NA NA NA NA NA Interval_59325 chr15 51685260 51685806 + 0 NA Intergenic Intergenic -55898 ENSMUSG00000115563.1 ENSMUSG00000115563 ENSMUST00000227000 Gm34562 lincRNA Interval_122105 chr5 17102530 17103993 + 0 NA Intergenic Intergenic 122225 ENSMUSG00000105706.1 ENSMUSG00000105706 ENSMUST00000197388 Gm42855 processed_pseudogene Interval_16616 chr10 65901039 65901300 + 0 NA intron (ENSMUSG00000112913.1, intron 1 of 4) lincRNA-intron (ENSMUSG00000112913.1, intron 1 of 5) 7081 ENSMUSG00000112913.1 ENSMUSG00000112913 ENSMUST00000218367 Gm30853 lincRNA Interval_34713 chr12 8878600 8879384 + 0 NA intron (ENSMUSG00000042976.6, intron 1 of 2) lincRNA-intron (ENSMUSG00000042976.6, intron 1 of 2) -1610 ENSMUSG00000042976.6 ENSMUSG00000042976 ENSMUST00000218928 9930038B18Rik lincRNA Interval_169179 chr9 95236599 95236882 + 0 NA Intergenic Intergenic 169982 ENSMUSG00000033350.7 ENSMUSG00000033350 ENSMUST00000036267 Chst2 protein_coding Interval_97262 chr2 132714271 132714709 + 0 NA intron (ENSMUSG00000044991.10, intron 1 of 1) protein_coding-intron (ENSMUSG00000044991.10, intron 2 of 2) -2616 ENSMUSG00000064413.1 ENSMUSG00000064413 ENSMUST00000082479 Gm22245 snRNA Interval_19841 chr10 110173329 110173735 + 0 NA intron (ENSMUSG00000020181.18, intron 3 of 40) protein_coding-intron (ENSMUSG00000020181.18, intron 3 of 4) -33363 ENSMUSG00000112595.1 ENSMUSG00000112595 ENSMUST00000218767 Gm47340 processed_pseudogene Interval_135019 chr6 34708702 34710362 + 0 NA promoter-TSS (ENSMUSG00000029761.16) protein_coding-promoter-TSS (ENSMUSG00000029761.16) 17374 ENSMUSG00000060411.3 ENSMUSG00000060411 ENSMUST00000075773 Npn2 antisense Interval_109898 chr3 150209340 150209900 + 0 NA Intergenic Intergenic -136078 ENSMUSG00000047676.6 ENSMUSG00000047676 ENSMUST00000057740 Rpsa-ps10 processed_pseudogene Interval_138020 chr6 84301679 84303514 + 0 NA Intergenic Intergenic 77344 ENSMUSG00000107538.1 ENSMUSG00000107538 ENSMUST00000203565 Gm44127 lincRNA Interval_146009 chr7 43090322 43090724 + 0 NA intron (ENSMUSG00000107181.1, intron 1 of 3) lincRNA-intron (ENSMUSG00000107181.1, intron 1 of 3) -7865 ENSMUSG00000108492.1 ENSMUSG00000108492 ENSMUST00000206176 Rpl18a-ps4 processed_pseudogene Interval_123691 chr5 34547383 34547656 + 0 NA intron (ENSMUSG00000054520.15, intron 2 of 3) protein_coding-intron (ENSMUSG00000054520.15, intron 1 of 12) -4026 ENSMUSG00000054520.15 ENSMUSG00000054520 ENSMUST00000202745 Sh3bp2 protein_coding Interval_173039 chrX 67210328 67210723 + 0 NA Intergenic Intergenic -40295 ENSMUSG00000081598.1 ENSMUSG00000081598 ENSMUST00000119380 Gm8312 processed_pseudogene Interval_93755 chr2 76647453 76649098 + 0 NA promoter-TSS (ENSMUSG00000002731.6) protein_coding-promoter-TSS (ENSMUSG00000002731.6) -201 ENSMUSG00000075267.9 ENSMUSG00000075267 ENSMUST00000099986 Pjvk protein_coding Interval_50027 chr13 119817009 119818303 + 0 NA Intergenic Intergenic 4423 ENSMUSG00000096182.1 ENSMUSG00000096182 ENSMUST00000179475 Gm23308 snRNA Interval_52096 chr14 35821594 35822035 + 0 NA TTS (ENSMUSG00000115375.1) processed_pseudogene-TTS (ENSMUSG00000115375.1) 1205 ENSMUSG00000115375.1 ENSMUSG00000115375 ENSMUST00000227206 Gm49039 processed_pseudogene Interval_151821 chr7 126870810 126872462 + 0 NA promoter-TSS (ENSMUSG00000059981.12) protein_coding-promoter-TSS (ENSMUSG00000059981.12) 5 ENSMUSG00000059981.12 ENSMUSG00000059981 ENSMUST00000156273 Taok2 protein_coding Interval_108815 chr3 131824535 131824924 + 0 NA intron (ENSMUSG00000105331.1, intron 1 of 3) lincRNA-intron (ENSMUSG00000105331.1, intron 1 of 3) 64924 ENSMUSG00000105331.1 ENSMUSG00000105331 ENSMUST00000197726 Gm29865 lincRNA Interval_92183 chr2 55503422 55503682 + 0 NA intron (ENSMUSG00000026824.11, intron 2 of 2) protein_coding-intron (ENSMUSG00000026824.11, intron 3 of 3) 66396 ENSMUSG00000026824.11 ENSMUSG00000026824 ENSMUST00000112632 Kcnj3 protein_coding Interval_154512 chr8 18816562 18816827 + 0 NA Intergenic Intergenic -29583 ENSMUSG00000031467.10 ENSMUSG00000031467 ENSMUST00000033847 Agpat5 protein_coding Interval_100841 chr2 172836108 172837139 + 0 NA Intergenic Intergenic 27718 ENSMUSG00000093160.1 ENSMUSG00000093160 ENSMUST00000175419 Gm22773 miRNA Interval_131063 chr5 134872532 134874140 + 0 NA Intergenic Intergenic 33397 ENSMUSG00000040576.8 ENSMUSG00000040576 ENSMUST00000047305 Tmem270 protein_coding Interval_6700 chr1 118864994 118865328 + 0 NA intron (ENSMUSG00000048402.14, intron 2 of 5) protein_coding-intron (ENSMUSG00000048402.14, intron 5 of 13) 55025 ENSMUSG00000100040.1 ENSMUSG00000100040 ENSMUST00000190981 Gm28467 processed_pseudogene Interval_104194 chr3 60318602 60319012 + 0 NA Intergenic Intergenic 24286 ENSMUSG00000107270.1 ENSMUSG00000107270 ENSMUST00000201864 Tgif1-ps processed_pseudogene Interval_52146 chr14 37118029 37118274 + 0 NA Intergenic Intergenic -4129 ENSMUSG00000096001.2 ENSMUSG00000096001 ENSMUST00000179488 2610528A11Rik protein_coding Interval_11865 chr1 186567195 186567887 + 0 NA Intergenic Intergenic -8860 ENSMUSG00000103690.1 ENSMUSG00000103690 ENSMUST00000195454 A730004F24Rik lincRNA Interval_51613 chr14 30714737 30716893 + 0 NA promoter-TSS (ENSMUSG00000006527.16) protein_coding-promoter-TSS (ENSMUSG00000006527.16) -676 ENSMUSG00000006527.16 ENSMUSG00000006527 ENSMUST00000227445 Sfmbt1 protein_coding Interval_79098 chr18 24515357 24517383 + 0 NA intron (ENSMUSG00000040446.4, intron 1 of 5) protein_coding-intron (ENSMUSG00000040446.4, intron 1 of 6) 13724 ENSMUSG00000040446.4 ENSMUSG00000040446 ENSMUST00000234403 Rprd1a protein_coding Interval_151448 chr7 122575027 122576145 + 0 NA intron (ENSMUSG00000052889.11, intron 10 of 17) protein_coding-intron (ENSMUSG00000052889.11, intron 10 of 16) -15349 ENSMUSG00000108341.1 ENSMUSG00000108341 ENSMUST00000205565 Gm44746 TEC Interval_7349 chr1 130351618 130352279 + 0 NA Intergenic Intergenic -70690 ENSMUSG00000086633.1 ENSMUSG00000086633 ENSMUST00000155992 Gm16081 lincRNA Interval_173693 chrX 102003727 102006058 + 0 NA promoter-TSS (ENSMUSG00000079481.11) protein_coding-promoter-TSS (ENSMUSG00000079481.11) 8260 ENSMUSG00000098968.1 ENSMUSG00000098968 ENSMUST00000184273 Gm27843 miRNA Interval_98756 chr2 154752059 154752487 + 0 NA Intergenic Intergenic -13822 ENSMUSG00000085691.1 ENSMUSG00000085691 ENSMUST00000155334 Gm14216 lincRNA Interval_38517 chr12 79807343 79809164 + 0 NA intron (ENSMUSG00000059060.15, intron 10 of 10) protein_coding-intron (ENSMUSG00000059060.15, intron 10 of 10) 117241 ENSMUSG00000112765.1 ENSMUSG00000112765 ENSMUST00000219857 9430078K24Rik lincRNA Interval_96450 chr2 123194717 123194904 + 0 NA Intergenic Intergenic -79114 ENSMUSG00000084372.1 ENSMUSG00000084372 ENSMUST00000119363 Gm13988 processed_pseudogene Interval_141675 chr6 133148763 133149883 + 0 NA Intergenic Intergenic -35050 ENSMUSG00000108115.1 ENSMUSG00000108115 ENSMUST00000205138 Gm7039 processed_pseudogene Interval_28286 chr11 74899036 74901865 + 0 NA exon (ENSMUSG00000038335.13, exon 5 of 15) protein_coding-exon (ENSMUSG00000038335.13, exon 5 of 15) 2352 ENSMUSG00000038335.13 ENSMUSG00000038335 ENSMUST00000130910 Tsr1 protein_coding Interval_161263 chr8 119378106 119379480 + 0 NA promoter-TSS (ENSMUSG00000110470.1) lincRNA-promoter-TSS (ENSMUSG00000110470.1) 97 ENSMUSG00000110470.1 ENSMUSG00000110470 ENSMUST00000212135 Gm45723 lincRNA Interval_148955 chr7 90353347 90353620 + 0 NA intron (ENSMUSG00000030616.16, intron 1 of 18) protein_coding-intron (ENSMUSG00000030616.16, intron 1 of 17) 4784 ENSMUSG00000030616.16 ENSMUSG00000030616 ENSMUST00000189194 Sytl2 protein_coding Interval_138951 chr6 93729601 93729975 + 0 NA intron (ENSMUSG00000045095.16, intron 12 of 24) protein_coding-intron (ENSMUSG00000045095.16, intron 11 of 21) -63984 ENSMUSG00000088627.1 ENSMUSG00000088627 ENSMUST00000158002 Gm23035 snRNA Interval_47980 chr13 94831689 94831906 + 0 NA intron (ENSMUSG00000042043.6, intron 1 of 3) protein_coding-intron (ENSMUSG00000042043.6, intron 1 of 3) 14063 ENSMUSG00000042043.6 ENSMUSG00000042043 ENSMUST00000220561 Tbca protein_coding Interval_170426 chr9 107887775 107888995 + 0 NA exon (ENSMUSG00000032583.7, exon 1 of 6) protein_coding-exon (ENSMUSG00000032583.7, exon 1 of 6) 234 ENSMUSG00000032583.7 ENSMUSG00000032583 ENSMUST00000035202 Mon1a protein_coding Interval_137009 chr6 66317050 66317478 + 0 NA Intergenic Intergenic 53109 ENSMUSG00000107653.1 ENSMUSG00000107653 ENSMUST00000203048 Gm31520 transcribed_processed_pseudogene Interval_151298 chr7 120809616 120810726 + 0 NA Intergenic Intergenic -2194 ENSMUSG00000109392.1 ENSMUSG00000109392 ENSMUST00000208668 Gm5737 protein_coding Interval_73065 chr17 34562655 34564669 + 0 NA promoter-TSS (ENSMUSG00000015468.14) protein_coding-promoter-TSS (ENSMUSG00000015468.14) 4475 ENSMUSG00000092406.1 ENSMUSG00000092406 ENSMUST00000172623 Gm20462 processed_pseudogene Interval_163142 chr9 15681953 15682347 + 0 NA promoter-TSS (ENSMUSG00000110786.1) processed_pseudogene-promoter-TSS (ENSMUSG00000110786.1) -752 ENSMUSG00000110786.1 ENSMUSG00000110786 ENSMUST00000215858 Gm5119 processed_pseudogene Interval_92575 chr2 60817935 60818829 + 0 NA intron (ENSMUSG00000026970.16, intron 2 of 14) protein_coding-intron (ENSMUSG00000026970.16, intron 2 of 13) 63056 ENSMUSG00000026970.16 ENSMUSG00000026970 ENSMUST00000128866 Rbms1 protein_coding Interval_65557 chr16 23292024 23292354 + 0 NA intron (ENSMUSG00000022885.16, intron 1 of 6) protein_coding-intron (ENSMUSG00000022885.16, intron 2 of 7) 66168 ENSMUSG00000022885.16 ENSMUSG00000022885 ENSMUST00000115335 St6gal1 protein_coding Interval_127301 chr5 102266987 102267845 + 0 NA Intergenic Intergenic 105125 ENSMUSG00000106189.1 ENSMUSG00000106189 ENSMUST00000196547 Gm42933 processed_pseudogene Interval_163579 chr9 22327269 22328619 + 0 NA Intergenic Intergenic 2556 ENSMUSG00000110759.1 ENSMUSG00000110759 ENSMUST00000215035 Gm6607 processed_pseudogene Interval_39841 chr12 98949760 98950224 + 0 NA intron (ENSMUSG00000021013.16, intron 3 of 3) protein_coding-intron (ENSMUSG00000021013.16, intron 7 of 14) 6489 ENSMUSG00000021013.16 ENSMUSG00000021013 ENSMUST00000139298 Ttc8 protein_coding Interval_141609 chr6 131270298 131270501 + 0 NA TTS (ENSMUSG00000108284.1) processed_pseudogene-TTS (ENSMUSG00000108284.1) 144 ENSMUSG00000108284.1 ENSMUSG00000108284 ENSMUST00000204052 Gm44182 processed_pseudogene Interval_154548 chr8 19297518 19298997 + 0 NA Intergenic Intergenic -2420 ENSMUSG00000081154.2 ENSMUSG00000081154 ENSMUST00000212360 Defa-ps13 transcribed_processed_pseudogene Interval_58893 chr15 39780274 39782342 + 0 NA intron (ENSMUSG00000022304.13, intron 9 of 9) protein_coding-intron (ENSMUSG00000022304.13, intron 9 of 9) 11943 ENSMUSG00000022304.13 ENSMUSG00000022304 ENSMUST00000150196 Dpys protein_coding Interval_46218 chr13 62627252 62628252 + 0 NA Intergenic Intergenic 3558 ENSMUSG00000095020.1 ENSMUSG00000095020 ENSMUST00000180156 Gm24020 miRNA Interval_123315 chr5 31339859 31340192 + 0 NA Intergenic Intergenic 16770 ENSMUSG00000106935.1 ENSMUSG00000106935 ENSMUST00000200995 Gm19457 processed_pseudogene Interval_143074 chr6 149091771 149092287 + 0 NA intron (ENSMUSG00000030313.15, intron 1 of 3) protein_coding-intron (ENSMUSG00000030313.15, intron 1 of 20) -17923 ENSMUSG00000065198.1 ENSMUSG00000065198 ENSMUST00000083264 Gm23462 snRNA Interval_123406 chr5 32302987 32303705 + 0 NA exon (ENSMUSG00000029134.14, exon 20 of 58) protein_coding-exon (ENSMUSG00000029134.14, exon 20 of 58) 8773 ENSMUSG00000081200.1 ENSMUSG00000081200 ENSMUST00000118876 Gm15615 processed_pseudogene Interval_127169 chr5 100787465 100788194 + 0 NA intron (ENSMUSG00000035266.16, intron 5 of 7) protein_coding-intron (ENSMUSG00000035266.16, intron 6 of 17) 4897 ENSMUSG00000035266.16 ENSMUSG00000035266 ENSMUST00000144948 Helq protein_coding Interval_20388 chr10 117258408 117258988 + 0 NA Intergenic Intergenic 10677 ENSMUSG00000078430.3 ENSMUSG00000078430 ENSMUST00000105264 Gm10936 unprocessed_pseudogene Interval_86480 chr19 40958454 40959695 + 0 NA intron (ENSMUSG00000061132.13, intron 6 of 16) protein_coding-intron (ENSMUSG00000061132.13, intron 6 of 16) 35461 ENSMUSG00000061132.13 ENSMUSG00000061132 ENSMUST00000134568 Blnk protein_coding Interval_41527 chr12 115988855 115990113 + 0 NA intron (ENSMUSG00000106239.1, intron 1 of 1) processed_pseudogene-intron (ENSMUSG00000106239.1, intron 1 of 1) 3886 ENSMUSG00000106239.1 ENSMUSG00000106239 ENSMUST00000199781 Gm9260 processed_pseudogene Interval_26696 chr11 59786577 59787971 + 0 NA exon (ENSMUSG00000043648.7, exon 1 of 2) protein_coding-exon (ENSMUSG00000043648.7, exon 1 of 2) 368 ENSMUSG00000043648.7 ENSMUSG00000043648 ENSMUST00000125307 Pld6 protein_coding Interval_142270 chr6 140295856 140296592 + 0 NA exon (ENSMUSG00000107572.1, exon 1 of 1) TEC-exon (ENSMUSG00000107572.1, exon 1 of 1) 232 ENSMUSG00000107572.1 ENSMUSG00000107572 ENSMUST00000204425 Gm3961 TEC Interval_67820 chr16 57438926 57439612 + 0 NA intron (ENSMUSG00000043336.14, intron 1 of 4) protein_coding-intron (ENSMUSG00000043336.14, intron 1 of 4) 86176 ENSMUSG00000043336.14 ENSMUSG00000043336 ENSMUST00000159414 Filip1l protein_coding Interval_106704 chr3 99215502 99215786 + 0 NA intron (ENSMUSG00000004233.14, intron 6 of 6) protein_coding-intron (ENSMUSG00000004233.14, intron 5 of 5) 9222 ENSMUSG00000106197.1 ENSMUSG00000106197 ENSMUST00000197309 Gm42717 sense_intronic Interval_40080 chr12 101054040 101054346 + 0 NA intron (ENSMUSG00000041846.15, intron 6 of 14) protein_coding-intron (ENSMUSG00000041846.15, intron 6 of 14) -10648 ENSMUSG00000041846.15 ENSMUSG00000041846 ENSMUST00000222302 Ppp4r3a protein_coding Interval_94663 chr2 93135237 93135850 + 0 NA Intergenic Intergenic -37299 ENSMUSG00000087559.1 ENSMUSG00000087559 ENSMUST00000150159 Gm13802 lincRNA Interval_5069 chr1 84779453 84780667 + 0 NA intron (ENSMUSG00000026219.14, intron 5 of 19) protein_coding-intron (ENSMUSG00000026219.14, intron 5 of 40) 29130 ENSMUSG00000103505.1 ENSMUSG00000103505 ENSMUST00000194417 Gm38374 TEC Interval_74285 chr17 47898017 47899313 + 0 NA intron (ENSMUSG00000023991.16, intron 2 of 2) protein_coding-intron (ENSMUSG00000023991.16, intron 2 of 16) -19712 ENSMUSG00000023991.16 ENSMUSG00000023991 ENSMUST00000153752 Foxp4 protein_coding Interval_158063 chr8 78492798 78493545 + 0 NA Intergenic Intergenic -6761 ENSMUSG00000110057.1 ENSMUSG00000110057 ENSMUST00000209570 Gm2225 processed_pseudogene Interval_57023 chr15 4419724 4421477 + 0 NA intron (ENSMUSG00000049148.8, intron 1 of 2) protein_coding-intron (ENSMUSG00000049148.8, intron 1 of 2) 45109 ENSMUSG00000049148.8 ENSMUSG00000049148 ENSMUST00000061925 Plcxd3 protein_coding Interval_94320 chr2 88670040 88670663 + 0 NA Intergenic Intergenic -5277 ENSMUSG00000060827.2 ENSMUSG00000060827 ENSMUST00000081697 Olfr1193 protein_coding Interval_46960 chr13 73758003 73758333 + 0 NA intron (ENSMUSG00000017756.9, intron 1 of 10) protein_coding-intron (ENSMUSG00000017756.9, intron 1 of 10) -46441 ENSMUSG00000017756.9 ENSMUSG00000017756 ENSMUST00000221813 Slc12a7 protein_coding Interval_102981 chr3 33989367 33991352 + 0 NA Intergenic Intergenic 15104 ENSMUSG00000044434.5 ENSMUSG00000044434 ENSMUST00000060997 Gm9791 processed_pseudogene Interval_98470 chr2 152639234 152640138 + 0 NA Intergenic Intergenic 12733 ENSMUSG00000000359.3 ENSMUSG00000000359 ENSMUST00000139370 Rem1 protein_coding Interval_60056 chr15 64302578 64303248 + 0 NA intron (ENSMUSG00000022377.16, intron 2 of 4) protein_coding-intron (ENSMUSG00000022377.16, intron 3 of 30) -11584 ENSMUSG00000115752.1 ENSMUSG00000115752 ENSMUST00000226773 1700010G06Rik antisense Interval_13966 chr10 25163336 25163716 + 0 NA Intergenic Intergenic 57165 ENSMUSG00000039166.16 ENSMUSG00000039166 ENSMUST00000176231 Akap7 protein_coding Interval_19014 chr10 93803295 93803609 + 0 NA Intergenic Intergenic -3846 ENSMUSG00000096598.1 ENSMUSG00000096598 ENSMUST00000178842 Gm26239 snRNA Interval_144661 chr7 27380913 27382564 + 0 NA intron (ENSMUSG00000011751.16, intron 20 of 35) protein_coding-intron (ENSMUSG00000011751.16, intron 20 of 35) -24319 ENSMUSG00000092367.1 ENSMUSG00000092367 ENSMUST00000126587 Gm20479 protein_coding Interval_38281 chr12 76883432 76884665 + 0 NA intron (ENSMUSG00000033373.16, intron 6 of 13) protein_coding-intron (ENSMUSG00000033373.16, intron 4 of 11) -3010 ENSMUSG00000033373.16 ENSMUSG00000033373 ENSMUST00000130605 Fntb protein_coding Interval_3182 chr1 54551663 54552342 + 0 NA intron (ENSMUSG00000073678.4, intron 1 of 11) protein_coding-intron (ENSMUSG00000073678.4, intron 1 of 26) 5625 ENSMUSG00000073678.4 ENSMUSG00000073678 ENSMUST00000189506 Pgap1 protein_coding Interval_19165 chr10 95248321 95248575 + 0 NA intron (ENSMUSG00000045867.10, intron 2 of 2) protein_coding-intron (ENSMUSG00000045867.10, intron 2 of 2) 66405 ENSMUSG00000112744.1 ENSMUSG00000112744 ENSMUST00000219461 Gm48880 TEC Interval_60347 chr15 73098236 73100167 + 0 NA exon (ENSMUSG00000036698.11, exon 19 of 19) protein_coding-exon (ENSMUSG00000036698.11, exon 19 of 19) 8789 ENSMUSG00000068391.8 ENSMUSG00000068391 ENSMUST00000137698 Chrac1 protein_coding Interval_146862 chr7 53803680 53804093 + 0 NA Intergenic Intergenic 88003 ENSMUSG00000099176.1 ENSMUSG00000099176 ENSMUST00000184140 Mir6238 miRNA Interval_114509 chr4 81723028 81723343 + 0 NA Intergenic Intergenic -19961 ENSMUSG00000087540.1 ENSMUSG00000087540 ENSMUST00000144875 Gm11412 lincRNA Interval_7397 chr1 130984269 130984779 + 0 NA Intergenic Intergenic -35321 ENSMUSG00000016529.5 ENSMUSG00000016529 ENSMUST00000016673 Il10 protein_coding Interval_7826 chr1 133950137 133951858 + 0 NA Intergenic Intergenic -11165 ENSMUSG00000100987.1 ENSMUSG00000100987 ENSMUST00000188504 Gm1627 lincRNA Interval_132136 chr5 142901508 142902952 + 0 NA TTS (ENSMUSG00000029580.14) protein_coding-TTS (ENSMUSG00000029580.14) 1424 ENSMUSG00000029580.14 ENSMUSG00000029580 ENSMUST00000164765 Actb protein_coding Interval_170082 chr9 104282265 104282799 + 0 NA Intergenic Intergenic 20427 ENSMUSG00000104040.1 ENSMUSG00000104040 ENSMUST00000192580 Gm37563 TEC Interval_142905 chr6 146823029 146823518 + 0 NA TTS (ENSMUSG00000040187.15) protein_coding-TTS (ENSMUSG00000040187.15) -7251 ENSMUSG00000040187.15 ENSMUSG00000040187 ENSMUST00000204578 Arntl2 protein_coding Interval_145814 chr7 39527048 39527277 + 0 NA intron (ENSMUSG00000068959.6, intron 1 of 3) protein_coding-intron (ENSMUSG00000068959.6, intron 1 of 3) 9396 ENSMUSG00000068959.6 ENSMUSG00000068959 ENSMUST00000108015 Zfp619 protein_coding Interval_31887 chr11 103627280 103627604 + 0 NA Intergenic Intergenic 7579 ENSMUSG00000020945.13 ENSMUSG00000020945 ENSMUST00000140430 Lyzl6 protein_coding Interval_138546 chr6 89095863 89096458 + 0 NA promoter-TSS (ENSMUSG00000055403.13) lincRNA-promoter-TSS (ENSMUSG00000055403.13) -44834 ENSMUSG00000090254.7 ENSMUSG00000090254 ENSMUST00000160361 Gm1965 lincRNA Interval_163333 chr9 20917860 20918149 + 0 NA exon (ENSMUSG00000004099.16, exon 26 of 39) protein_coding-exon (ENSMUSG00000004099.16, exon 26 of 39) -3840 ENSMUSG00000099147.1 ENSMUSG00000099147 ENSMUST00000184490 Mir7081 miRNA Interval_26104 chr11 54303200 54304607 + 0 NA promoter-TSS (ENSMUSG00000020333.17) protein_coding-promoter-TSS (ENSMUSG00000020333.17) -16249 ENSMUSG00000020333.17 ENSMUSG00000020333 ENSMUST00000139484 Acsl6 protein_coding Interval_6113 chr1 97422905 97423778 + 0 NA intron (ENSMUSG00000101348.6, intron 7 of 11) transcribed_unprocessed_pseudogene-intron (ENSMUSG00000101348.6, intron 7 of 11) 76866 ENSMUSG00000101348.6 ENSMUSG00000101348 ENSMUST00000187538 Gm7135 transcribed_unprocessed_pseudogene Interval_8865 chr1 151640547 151641246 + 0 NA intron (ENSMUSG00000026483.13, intron 2 of 13) protein_coding-intron (ENSMUSG00000026483.13, intron 2 of 14) 69523 ENSMUSG00000026483.13 ENSMUSG00000026483 ENSMUST00000086267 Fam129a protein_coding Interval_149167 chr7 95701674 95702146 + 0 NA Intergenic Intergenic 211476 ENSMUSG00000108628.1 ENSMUSG00000108628 ENSMUST00000205327 Gm5037 processed_pseudogene Interval_54267 chr14 67017783 67018320 + 0 NA TTS (ENSMUSG00000022052.9) protein_coding-TTS (ENSMUSG00000022052.9) -18146 ENSMUSG00000022051.15 ENSMUSG00000022051 ENSMUST00000129605 Bnip3l protein_coding Interval_71792 chr17 26119959 26120596 + 0 NA intron (ENSMUSG00000024180.14, intron 9 of 11) protein_coding-intron (ENSMUSG00000024180.14, intron 9 of 12) -3243 ENSMUSG00000024181.9 ENSMUSG00000024181 ENSMUST00000123132 Mrpl28 protein_coding Interval_130670 chr5 129623277 129624024 + 0 NA exon (ENSMUSG00000057244.6, exon 1 of 1) processed_pseudogene-exon (ENSMUSG00000057244.6, exon 1 of 1) 221 ENSMUSG00000057244.6 ENSMUSG00000057244 ENSMUST00000079261 Gm6139 processed_pseudogene Interval_11194 chr1 180024749 180025496 + 0 NA intron (ENSMUSG00000026490.18, intron 3 of 17) protein_coding-intron (ENSMUSG00000026490.18, intron 2 of 34) 4060 ENSMUSG00000102194.1 ENSMUSG00000102194 ENSMUST00000191822 Gm38169 TEC Interval_43302 chr13 28899895 28900668 + 0 NA Intergenic Intergenic -2336 ENSMUSG00000113352.1 ENSMUSG00000113352 ENSMUST00000223473 Gm34639 lincRNA Interval_115885 chr4 105691978 105693389 + 0 NA Intergenic Intergenic -97851 ENSMUSG00000083780.8 ENSMUSG00000083780 ENSMUST00000119740 Gm12728 protein_coding Interval_20089 chr10 114055395 114056293 + 0 NA Intergenic Intergenic -39883 ENSMUSG00000112921.1 ENSMUSG00000112921 ENSMUST00000218197 Gm48104 TEC Interval_166763 chr9 62488950 62489642 + 0 NA exon (ENSMUSG00000041729.15, exon 2 of 12) protein_coding-exon (ENSMUSG00000041729.15, exon 2 of 12) -25733 ENSMUSG00000084540.1 ENSMUSG00000084540 ENSMUST00000122591 n-R5s84 rRNA Interval_54976 chr14 76615137 76617356 + 0 NA Intergenic Intergenic 20618 ENSMUSG00000115143.1 ENSMUSG00000115143 ENSMUST00000227724 Fkbp1a-ps1 processed_pseudogene Interval_28444 chr11 75931181 75931426 + 0 NA intron (ENSMUSG00000020847.15, intron 1 of 5) protein_coding-intron (ENSMUSG00000020847.15, intron 1 of 5) 7126 ENSMUSG00000020847.15 ENSMUSG00000020847 ENSMUST00000152035 Rph3al protein_coding Interval_171887 chr9 122116954 122118106 + 0 NA promoter-TSS (ENSMUSG00000038145.17) protein_coding-promoter-TSS (ENSMUSG00000038145.17) 226 ENSMUSG00000038145.17 ENSMUSG00000038145 ENSMUST00000145384 Snrk protein_coding Interval_56728 chr14 121694855 121695154 + 0 NA intron (ENSMUSG00000025558.19, intron 1 of 52) protein_coding-intron (ENSMUSG00000025558.19, intron 1 of 53) 43857 ENSMUSG00000025558.19 ENSMUSG00000025558 ENSMUST00000238406 Dock9 protein_coding Interval_73494 chr17 38013841 38014257 + 0 NA Intergenic Intergenic 4402 ENSMUSG00000092390.1 ENSMUSG00000092390 ENSMUST00000173035 Gm20541 unprocessed_pseudogene Interval_106954 chr3 102164276 102166640 + 0 NA exon (ENSMUSG00000027860.15, exon 6 of 8) protein_coding-exon (ENSMUSG00000027860.15, exon 6 of 8) 30843 ENSMUSG00000106296.1 ENSMUSG00000106296 ENSMUST00000197326 4632404M16Rik sense_intronic Interval_154329 chr8 14610705 14610923 + 0 NA intron (ENSMUSG00000047495.15, intron 3 of 14) protein_coding-intron (ENSMUSG00000047495.15, intron 3 of 14) 136613 ENSMUSG00000084945.1 ENSMUSG00000084945 ENSMUST00000155211 C030037F17Rik antisense Interval_94791 chr2 94348357 94348688 + 0 NA intron (ENSMUSG00000027194.16, intron 16 of 24) protein_coding-intron (ENSMUSG00000027194.16, intron 6 of 14) 36576 ENSMUSG00000081476.1 ENSMUSG00000081476 ENSMUST00000117207 Itpa-ps1 processed_pseudogene Interval_32592 chr11 108948252 108950145 + 0 NA intron (ENSMUSG00000000142.15, intron 3 of 3) protein_coding-intron (ENSMUSG00000000142.15, intron 10 of 10) -7183 ENSMUSG00000086268.1 ENSMUSG00000086268 ENSMUST00000143435 Gm11670 antisense Interval_123272 chr5 31047754 31049581 + 0 NA promoter-TSS (ENSMUSG00000013622.15) protein_coding-promoter-TSS (ENSMUSG00000013622.15) 346 ENSMUSG00000013622.15 ENSMUSG00000013622 ENSMUST00000200800 Atraid protein_coding Interval_99664 chr2 164048666 164049071 + 0 NA intron (ENSMUSG00000054582.4, intron 1 of 1) protein_coding-intron (ENSMUSG00000054582.4, intron 12 of 13) 11868 ENSMUSG00000054582.4 ENSMUSG00000054582 ENSMUST00000150523 Pabpc1l protein_coding Interval_91635 chr2 45067114 45067442 + 0 NA intron (ENSMUSG00000026872.18, intron 2 of 3) protein_coding-intron (ENSMUSG00000026872.18, intron 2 of 9) -43643 ENSMUSG00000052248.16 ENSMUSG00000052248 ENSMUST00000231441 Zeb2os antisense Interval_101613 chr3 7732370 7733292 + 0 NA Intergenic Intergenic -119104 ENSMUSG00000040329.14 ENSMUSG00000040329 ENSMUST00000191681 Il7 protein_coding Interval_76513 chr17 80688893 80689158 + 0 NA intron (ENSMUSG00000024242.15, intron 1 of 1) protein_coding-intron (ENSMUSG00000024242.15, intron 1 of 33) -39106 ENSMUSG00000054957.5 ENSMUSG00000054957 ENSMUST00000068277 Gm9959 pseudogene Interval_11397 chr1 181616074 181616439 + 0 NA intron (ENSMUSG00000047369.17, intron 12 of 84) protein_coding-intron (ENSMUSG00000047369.17, intron 12 of 83) 34303 ENSMUSG00000047369.17 ENSMUSG00000047369 ENSMUST00000195808 Dnah14 protein_coding Interval_4460 chr1 74340422 74341437 + 0 NA intron (ENSMUSG00000026179.14, intron 1 of 8) protein_coding-intron (ENSMUSG00000026179.14, intron 2 of 9) 8266 ENSMUSG00000026179.14 ENSMUSG00000026179 ENSMUST00000190398 Pnkd protein_coding Interval_99256 chr2 158409357 158410811 + 0 NA promoter-TSS (ENSMUSG00000027652.15) protein_coding-promoter-TSS (ENSMUSG00000027652.15) -3266 ENSMUSG00000083715.1 ENSMUSG00000083715 ENSMUST00000120121 Gm14202 processed_pseudogene Interval_84869 chr19 18397300 18397527 + 0 NA Intergenic Intergenic -82663 ENSMUSG00000118192.1 ENSMUSG00000118192 ENSMUST00000237767 Gm50183 processed_pseudogene Interval_10160 chr1 166238226 166239385 + 0 NA promoter-TSS (ENSMUSG00000040629.8) protein_coding-promoter-TSS (ENSMUSG00000040629.8) -58 ENSMUSG00000040629.8 ENSMUSG00000040629 ENSMUST00000038782 Mael protein_coding Interval_171888 chr9 122120165 122120621 + 0 NA TTS (ENSMUSG00000111003.1) TEC-TTS (ENSMUSG00000111003.1) 1248 ENSMUSG00000111003.1 ENSMUSG00000111003 ENSMUST00000217153 Gm47122 TEC Interval_159844 chr8 104292555 104293858 + 0 NA promoter-TSS (ENSMUSG00000074127.6) protein_coding-promoter-TSS (ENSMUSG00000074127.6) -32 ENSMUSG00000074127.6 ENSMUSG00000074127 ENSMUST00000212487 Cmtm2a protein_coding Interval_104501 chr3 66913776 66914408 + 0 NA Intergenic Intergenic -6326 ENSMUSG00000103318.1 ENSMUSG00000103318 ENSMUST00000194313 Gm38356 processed_pseudogene Interval_153365 chr7 144052194 144052756 + 0 NA exon (ENSMUSG00000037541.22, exon 3 of 23) protein_coding-exon (ENSMUSG00000037541.22, exon 3 of 23) 43221 ENSMUSG00000093221.1 ENSMUSG00000093221 ENSMUST00000175480 Mir3105 miRNA Interval_97943 chr2 145996581 145997018 + 0 NA intron (ENSMUSG00000037143.17, intron 8 of 26) protein_coding-intron (ENSMUSG00000037143.17, intron 8 of 15) -62085 ENSMUSG00000001767.5 ENSMUSG00000001767 ENSMUST00000147904 Crnkl1 protein_coding Interval_134 GL456378.1 15447 15850 + 0 NA NA NA NA NA Interval_90004 chr2 27261322 27261998 + 0 NA TTS (ENSMUSG00000009621.18) protein_coding-TTS (ENSMUSG00000009621.18) -51723 ENSMUSG00000009614.16 ENSMUSG00000009614 ENSMUST00000129975 Sardh protein_coding Interval_97084 chr2 131126619 131128738 + 0 NA intron (ENSMUSG00000074793.10, intron 1 of 11) protein_coding-intron (ENSMUSG00000074793.10, intron 1 of 12) 184 ENSMUSG00000074793.10 ENSMUSG00000074793 ENSMUST00000127862 Hspa12b protein_coding Interval_143388 chr7 6299009 6301321 + 0 NA intron (ENSMUSG00000054893.15, intron 4 of 4) protein_coding-intron (ENSMUSG00000054893.15, intron 4 of 4) 13551 ENSMUSG00000054893.15 ENSMUSG00000054893 ENSMUST00000147784 Zfp667 protein_coding Interval_30829 chr11 96750052 96750963 + 0 NA intron (ENSMUSG00000057058.16, intron 10 of 10) protein_coding-intron (ENSMUSG00000057058.16, intron 10 of 11) -16295 ENSMUSG00000085242.1 ENSMUSG00000085242 ENSMUST00000124865 Gm11537 antisense Interval_171572 chr9 119271259 119272733 + 0 NA intron (ENSMUSG00000036737.12, intron 6 of 18) protein_coding-intron (ENSMUSG00000036737.12, intron 5 of 17) -7224 ENSMUSG00000036737.12 ENSMUSG00000036737 ENSMUST00000143728 Oxsr1 protein_coding Interval_117078 chr4 119400833 119401133 + 0 NA intron (ENSMUSG00000028637.16, intron 3 of 14) protein_coding-intron (ENSMUSG00000028637.16, intron 3 of 14) 7483 ENSMUSG00000118403.1 ENSMUSG00000118403 ENSMUST00000238574 Gm50484 antisense Interval_170054 chr9 104098843 104099742 + 0 NA exon (ENSMUSG00000079355.5, exon 3 of 3) protein_coding-exon (ENSMUSG00000079355.5, exon 3 of 3) 1719 ENSMUSG00000079355.5 ENSMUSG00000079355 ENSMUST00000188000 Ackr4 protein_coding Interval_150332 chr7 109658371 109658605 + 0 NA intron (ENSMUSG00000031024.13, intron 1 of 3) protein_coding-intron (ENSMUSG00000031024.13, intron 1 of 3) -41037 ENSMUSG00000109499.1 ENSMUSG00000109499 ENSMUST00000207292 Gm44864 antisense Interval_87147 chr19 46448175 46448533 + 0 NA intron (ENSMUSG00000025231.17, intron 2 of 5) protein_coding-intron (ENSMUSG00000025231.17, intron 3 of 11) 47230 ENSMUSG00000025231.17 ENSMUSG00000025231 ENSMUST00000144341 Sufu protein_coding Interval_171438 chr9 118354547 118355942 + 0 NA Intergenic Intergenic 48058 ENSMUSG00000103968.1 ENSMUSG00000103968 ENSMUST00000193035 2610509F24Rik TEC Interval_119337 chr4 136945243 136946364 + 0 NA exon (ENSMUSG00000028661.8, exon 3 of 17) protein_coding-exon (ENSMUSG00000028661.8, exon 3 of 17) 11013 ENSMUSG00000028661.8 ENSMUSG00000028661 ENSMUST00000030420 Epha8 protein_coding Interval_31186 chr11 98773744 98775817 + 0 NA exon (ENSMUSG00000020889.11, exon 1 of 8) protein_coding-exon (ENSMUSG00000020889.11, exon 1 of 8) -4354 ENSMUSG00000020889.11 ENSMUSG00000020889 ENSMUST00000139220 Nr1d1 protein_coding Interval_109941 chr3 152075616 152076392 + 0 NA Intergenic Intergenic -4203 ENSMUSG00000105035.1 ENSMUSG00000105035 ENSMUST00000197505 Gm9682 processed_pseudogene Interval_44688 chr13 47163459 47163784 + 0 NA intron (ENSMUSG00000038068.15, intron 1 of 7) protein_coding-intron (ENSMUSG00000038068.15, intron 1 of 7) -8613 ENSMUSG00000114882.1 ENSMUSG00000114882 ENSMUST00000225219 Gm48581 TEC Interval_154569 chr8 20874122 20874808 + 0 NA Intergenic Intergenic -3815 ENSMUSG00000094534.1 ENSMUSG00000094534 ENSMUST00000178122 Gm20945 processed_pseudogene Interval_141171 chr6 125403663 125406284 + 0 NA Intergenic Intergenic -24180 ENSMUSG00000038167.6 ENSMUSG00000038167 ENSMUST00000042647 Plekhg6 protein_coding Interval_126131 chr5 77899773 77900143 + 0 NA Intergenic Intergenic 9502 ENSMUSG00000106960.1 ENSMUSG00000106960 ENSMUST00000202676 Gm42673 processed_pseudogene Interval_122401 chr5 22009869 22010381 + 0 NA exon (ENSMUSG00000042453.14, exon 24 of 64) protein_coding-exon (ENSMUSG00000042453.14, exon 24 of 64) -52139 ENSMUSG00000105766.1 ENSMUSG00000105766 ENSMUST00000198176 Gm19666 TEC Interval_119682 chr4 139192393 139193955 + 0 NA promoter-TSS (ENSMUSG00000028745.18) protein_coding-promoter-TSS (ENSMUSG00000028745.18) -937 ENSMUSG00000028745.18 ENSMUSG00000028745 ENSMUST00000132385 Capzb protein_coding Interval_144274 chr7 24174565 24175573 + 0 NA promoter-TSS (ENSMUSG00000068962.7) protein_coding-promoter-TSS (ENSMUSG00000068962.7) -17 ENSMUSG00000068962.7 ENSMUSG00000068962 ENSMUST00000086010 Zfp114 protein_coding Interval_129503 chr5 120604950 120607279 + 0 NA promoter-TSS (ENSMUSG00000029600.10) protein_coding-promoter-TSS (ENSMUSG00000029600.10) 6475 ENSMUSG00000029600.10 ENSMUSG00000029600 ENSMUST00000140554 Rita1 protein_coding Interval_143751 chr7 16063209 16063715 + 0 NA intron (ENSMUSG00000078796.4, intron 2 of 17) protein_coding-intron (ENSMUSG00000078796.4, intron 2 of 17) -8459 ENSMUSG00000078796.4 ENSMUSG00000078796 ENSMUST00000108509 Zfp541 protein_coding Interval_147328 chr7 65883512 65883793 + 0 NA intron (ENSMUSG00000030513.14, intron 1 of 19) protein_coding-intron (ENSMUSG00000030513.14, intron 1 of 21) -21660 ENSMUSG00000093405.1 ENSMUSG00000093405 ENSMUST00000176744 Gm20684 bidirectional_promoter_lncRNA Interval_35749 chr12 28831146 28831545 + 0 NA intron (ENSMUSG00000036613.8, intron 4 of 8) protein_coding-intron (ENSMUSG00000036613.8, intron 5 of 9) 21207 ENSMUSG00000113886.1 ENSMUSG00000113886 ENSMUST00000222829 Gm48905 sense_intronic Interval_102303 chr3 21531036 21531581 + 0 NA Intergenic Intergenic -72502 ENSMUSG00000106085.1 ENSMUSG00000106085 ENSMUST00000199468 Gm43675 unprocessed_pseudogene Interval_107153 chr3 103979639 103980611 + 0 NA intron (ENSMUSG00000058388.14, intron 2 of 4) protein_coding-intron (ENSMUSG00000058388.14, intron 3 of 17) 11537 ENSMUSG00000058388.14 ENSMUSG00000058388 ENSMUST00000130385 Phtf1 protein_coding Interval_136559 chr6 55611068 55611485 + 0 NA Intergenic Intergenic 69987 ENSMUSG00000037984.9 ENSMUSG00000037984 ENSMUST00000044767 Neurod6 protein_coding Interval_6159 chr1 98223848 98224060 + 0 NA Intergenic Intergenic -39569 ENSMUSG00000097608.1 ENSMUSG00000097608 ENSMUST00000180540 Gm7952 processed_pseudogene Interval_111122 chr4 12402340 12403789 + 0 NA Intergenic Intergenic 131665 ENSMUSG00000085909.1 ENSMUSG00000085909 ENSMUST00000155156 Gm11846 lincRNA Interval_11967 chr1 187836434 187836778 + 0 NA intron (ENSMUSG00000026610.13, intron 3 of 3) protein_coding-intron (ENSMUSG00000026610.13, intron 2 of 7) 123801 ENSMUSG00000118492.1 ENSMUSG00000118492 ENSMUST00000238811 AC121143.1 processed_pseudogene Interval_112989 chr4 46642685 46644099 + 0 NA intron (ENSMUSG00000039813.14, intron 2 of 3) protein_coding-intron (ENSMUSG00000039813.14, intron 2 of 12) 6817 ENSMUSG00000039813.14 ENSMUSG00000039813 ENSMUST00000107750 Tbc1d2 protein_coding Interval_119300 chr4 136730385 136731041 + 0 NA intron (ENSMUSG00000028664.14, intron 3 of 15) protein_coding-intron (ENSMUSG00000028664.14, intron 3 of 15) -36673 ENSMUSG00000028664.14 ENSMUSG00000028664 ENSMUST00000144573 Ephb2 protein_coding Interval_155118 chr8 26765108 26765337 + 0 NA Intergenic Intergenic -4661 ENSMUSG00000109689.1 ENSMUSG00000109689 ENSMUST00000210983 Gm45646 lincRNA Interval_13539 chr10 19329245 19329728 + 0 NA Intergenic Intergenic -27047 ENSMUSG00000045591.6 ENSMUSG00000045591 ENSMUST00000053225 Olig3 protein_coding Interval_7975 chr1 134987169 134988529 + 0 NA exon (ENSMUSG00000042793.13, exon 18 of 18) protein_coding-exon (ENSMUSG00000042793.13, exon 18 of 18) 25231 ENSMUSG00000026429.9 ENSMUSG00000026429 ENSMUST00000139617 Ube2t protein_coding Interval_131121 chr5 135264001 135264878 + 0 NA exon (ENSMUSG00000106913.1, exon 1 of 1) TEC-exon (ENSMUSG00000106913.1, exon 1 of 1) 113 ENSMUSG00000106913.1 ENSMUSG00000106913 ENSMUST00000201947 9430007M09Rik TEC Interval_121385 chr4 155408784 155409764 + 0 NA promoter-TSS (ENSMUSG00000078490.10) protein_coding-promoter-TSS (ENSMUSG00000078490.10) 16 ENSMUSG00000078490.10 ENSMUSG00000078490 ENSMUST00000144625 Cfap74 protein_coding Interval_106237 chr3 94833003 94833495 + 0 NA exon (ENSMUSG00000084058.1, exon 1 of 2) processed_pseudogene-exon (ENSMUSG00000084058.1, exon 1 of 2) 272 ENSMUSG00000084058.1 ENSMUSG00000084058 ENSMUST00000121556 Gm15263 processed_pseudogene Interval_122601 chr5 24110036 24110466 + 0 NA intron (ENSMUSG00000028986.12, intron 1 of 11) protein_coding-intron (ENSMUSG00000028986.12, intron 1 of 10) 8413 ENSMUSG00000106133.1 ENSMUSG00000106133 ENSMUST00000197957 Gm3724 processed_pseudogene Interval_71627 chr17 24967403 24968569 + 0 NA intron (ENSMUSG00000038002.9, intron 20 of 20) protein_coding-intron (ENSMUSG00000038002.9, intron 20 of 20) -7341 ENSMUSG00000024165.9 ENSMUSG00000024165 ENSMUST00000233481 Jpt2 protein_coding Interval_20044 chr10 112546711 112546924 + 0 NA Intergenic Intergenic 90561 ENSMUSG00000035681.7 ENSMUSG00000035681 ENSMUST00000218827 Kcnc2 protein_coding Interval_56526 chr14 119999371 120000104 + 0 NA Intergenic Intergenic 42698 ENSMUSG00000044819.5 ENSMUSG00000044819 ENSMUST00000058213 Oxgr1 protein_coding Interval_25488 chr11 49168783 49169934 + 0 NA TTS (ENSMUSG00000040283.14) protein_coding-TTS (ENSMUSG00000040283.14) 14981 ENSMUSG00000048378.2 ENSMUSG00000048378 ENSMUST00000052668 Olfr1394 protein_coding Interval_100308 chr2 168303363 168303601 + 0 NA Intergenic Intergenic -8361 ENSMUSG00000086783.1 ENSMUSG00000086783 ENSMUST00000148309 Gm14262 lincRNA Interval_129843 chr5 122698432 122699843 + 0 NA Intergenic Intergenic -1537 ENSMUSG00000059352.5 ENSMUSG00000059352 ENSMUST00000071235 Gm10064 processed_pseudogene Interval_35796 chr12 29927095 29927606 + 0 NA Intergenic Intergenic -10258 ENSMUSG00000020674.17 ENSMUSG00000020674 ENSMUST00000218620 Pxdn protein_coding Interval_51596 chr14 30580003 30580949 + 0 NA Intergenic Intergenic 8327 ENSMUSG00000093156.1 ENSMUSG00000093156 ENSMUST00000175415 Mir3076 miRNA Interval_80339 chr18 39454623 39455347 + 0 NA intron (ENSMUSG00000024431.15, intron 2 of 3) protein_coding-intron (ENSMUSG00000024431.15, intron 2 of 8) 64436 ENSMUSG00000024431.15 ENSMUSG00000024431 ENSMUST00000150483 Nr3c1 protein_coding Interval_49657 chr13 113830688 113831426 + 0 NA intron (ENSMUSG00000042348.10, intron 1 of 3) protein_coding-intron (ENSMUSG00000042348.10, intron 1 of 4) 36464 ENSMUSG00000042348.10 ENSMUSG00000042348 ENSMUST00000224068 Arl15 protein_coding Interval_104175 chr3 59689134 59689385 + 0 NA Intergenic Intergenic 26401 ENSMUSG00000102480.1 ENSMUSG00000102480 ENSMUST00000191922 Gm37926 TEC Interval_26750 chr11 60210192 60210991 + 0 NA promoter-TSS (ENSMUSG00000020538.15) protein_coding-promoter-TSS (ENSMUSG00000020538.15) -7967 ENSMUSG00000020538.15 ENSMUSG00000020538 ENSMUST00000136215 Srebf1 protein_coding Interval_142866 chr6 146585438 146586501 + 0 NA exon (ENSMUSG00000040242.14, exon 2 of 2) protein_coding-exon (ENSMUSG00000040242.14, exon 2 of 2) 8029 ENSMUSG00000040242.14 ENSMUSG00000040242 ENSMUST00000160697 Fgfr1op2 protein_coding Interval_132952 chr5 148934953 148936331 + 0 NA intron (ENSMUSG00000106892.1, intron 2 of 6) protein_coding-intron (ENSMUSG00000106892.1, intron 2 of 6) -6977 ENSMUSG00000041298.15 ENSMUSG00000041298 ENSMUST00000152360 Katnal1 protein_coding Interval_7657 chr1 132878556 132881584 + 0 NA promoter-TSS (ENSMUSG00000026443.3) protein_coding-promoter-TSS (ENSMUSG00000026443.3) -285 ENSMUSG00000026443.3 ENSMUSG00000026443 ENSMUST00000159088 Lrrn2 protein_coding Interval_26370 chr11 57433982 57434382 + 0 NA Intergenic Intergenic -14925 ENSMUSG00000082476.1 ENSMUSG00000082476 ENSMUST00000118824 Gm12242 processed_pseudogene Interval_162900 chr9 12300454 12300948 + 0 NA Intergenic Intergenic 66707 ENSMUSG00000111810.1 ENSMUSG00000111810 ENSMUST00000217033 Gm29785 processed_pseudogene Interval_55885 chr14 101780987 101782334 + 0 NA intron (ENSMUSG00000033060.16, intron 1 of 30) protein_coding-intron (ENSMUSG00000033060.16, intron 1 of 30) -51845 ENSMUSG00000053821.4 ENSMUSG00000053821 ENSMUST00000066461 Gm9922 bidirectional_promoter_lncRNA Interval_158289 chr8 80858022 80860145 + 0 NA intron (ENSMUSG00000031714.9, intron 1 of 10) protein_coding-intron (ENSMUSG00000031714.9, intron 1 of 9) -20857 ENSMUSG00000109587.1 ENSMUSG00000109587 ENSMUST00000211421 Gm31105 antisense Interval_103573 chr3 49958667 49959304 + 0 NA intron (ENSMUSG00000027737.10, intron 11 of 11) protein_coding-intron (ENSMUSG00000027737.10, intron 11 of 11) -42987 ENSMUSG00000102892.1 ENSMUSG00000102892 ENSMUST00000192149 Gm37854 antisense Interval_91093 chr2 34992940 34993510 + 0 NA promoter-TSS (ENSMUSG00000085599.1) antisense-promoter-TSS (ENSMUSG00000085599.1) -748 ENSMUSG00000085599.1 ENSMUSG00000085599 ENSMUST00000153559 Gm13449 antisense Interval_40548 chr12 105655147 105656165 + 0 NA intron (ENSMUSG00000041341.10, intron 14 of 41) protein_coding-intron (ENSMUSG00000041341.10, intron 14 of 41) 9813 ENSMUSG00000087854.1 ENSMUSG00000087854 ENSMUST00000157229 Gm22790 rRNA Interval_109066 chr3 135545997 135547794 + 0 NA intron (ENSMUSG00000028164.15, intron 9 of 12) protein_coding-intron (ENSMUSG00000028164.15, intron 9 of 16) -16296 ENSMUSG00000028164.15 ENSMUSG00000028164 ENSMUST00000153412 Manba protein_coding Interval_151158 chr7 118887211 118888197 + 0 NA intron (ENSMUSG00000073856.11, intron 3 of 4) protein_coding-intron (ENSMUSG00000073856.11, intron 4 of 8) 31952 ENSMUSG00000073856.11 ENSMUSG00000073856 ENSMUST00000132148 Iqck protein_coding Interval_111355 chr4 19629687 19629904 + 0 NA intron (ENSMUSG00000041058.15, intron 18 of 24) protein_coding-intron (ENSMUSG00000041058.15, intron 16 of 22) 24344 ENSMUSG00000078772.2 ENSMUSG00000078772 ENSMUST00000108250 Gm12353 protein_coding Interval_75360 chr17 66111116 66111959 + 0 NA promoter-TSS (ENSMUSG00000024101.15) protein_coding-promoter-TSS (ENSMUSG00000024101.15) -4148 ENSMUSG00000024101.15 ENSMUSG00000024101 ENSMUST00000233311 Washc1 protein_coding Interval_58017 chr15 26247921 26248646 + 0 NA Intergenic Intergenic -139436 ENSMUSG00000022269.13 ENSMUSG00000022269 ENSMUST00000155819 Marchf11 protein_coding Interval_88597 chr2 6473704 6474420 + 0 NA TTS (ENSMUSG00000086109.2) lincRNA-TTS (ENSMUSG00000086109.2) 2062 ENSMUSG00000086109.2 ENSMUSG00000086109 ENSMUST00000128589 Gm13391 lincRNA Interval_109620 chr3 145392161 145392544 + 0 NA intron (ENSMUSG00000028197.4, intron 20 of 59) protein_coding-intron (ENSMUSG00000028197.4, intron 20 of 59) 25692 ENSMUSG00000105619.1 ENSMUSG00000105619 ENSMUST00000197919 9530034A14Rik antisense Interval_148908 chr7 89966530 89966786 + 0 NA intron (ENSMUSG00000030619.10, intron 7 of 11) protein_coding-intron (ENSMUSG00000030619.10, intron 7 of 11) -1264 ENSMUSG00000109038.1 ENSMUSG00000109038 ENSMUST00000208880 Gm45120 TEC Interval_135779 chr6 47284255 47285279 + 0 NA intron (ENSMUSG00000039419.17, intron 2 of 3) protein_coding-intron (ENSMUSG00000039419.17, intron 2 of 3) 148322 ENSMUSG00000107853.1 ENSMUSG00000107853 ENSMUST00000203098 Gm18584 processed_pseudogene Interval_22900 chr11 17191532 17193124 + 0 NA promoter-TSS (ENSMUSG00000033953.10) protein_coding-promoter-TSS (ENSMUSG00000033953.10) -516 ENSMUSG00000033953.10 ENSMUSG00000033953 ENSMUST00000154425 Ppp3r1 protein_coding Interval_161766 chr8 122630087 122631106 + 0 NA exon (ENSMUSG00000006362.16, exon 11 of 11) protein_coding-exon (ENSMUSG00000006362.16, exon 11 of 11) -7862 ENSMUSG00000069867.3 ENSMUSG00000069867 ENSMUST00000212966 Pabpn1l protein_coding Interval_169085 chr9 92070409 92071139 + 0 NA Intergenic Intergenic -109656 ENSMUSG00000109896.1 ENSMUSG00000109896 ENSMUST00000209894 Gm31409 lincRNA Interval_133919 chr6 15592801 15593166 + 0 NA Intergenic Intergenic -43141 ENSMUSG00000107703.1 ENSMUSG00000107703 ENSMUST00000204192 Gm44039 TEC Interval_52537 chr14 47367174 47368342 + 0 NA promoter-TSS (ENSMUSG00000050335.17) protein_coding-promoter-TSS (ENSMUSG00000050335.17) -6158 ENSMUSG00000050335.17 ENSMUSG00000050335 ENSMUST00000146468 Lgals3 protein_coding Interval_66413 chr16 33725386 33725781 + 0 NA exon (ENSMUSG00000075254.12, exon 3 of 15) protein_coding-exon (ENSMUSG00000075254.12, exon 3 of 15) 41213 ENSMUSG00000075254.12 ENSMUSG00000075254 ENSMUST00000146518 Heg1 protein_coding Interval_28959 chr11 79577484 79578449 + 0 NA intron (ENSMUSG00000020716.16, intron 17 of 17) protein_coding-intron (ENSMUSG00000020716.16, intron 57 of 57) -17199 ENSMUSG00000064486.1 ENSMUSG00000064486 ENSMUST00000082552 Gm23293 snRNA Interval_125625 chr5 72867247 72869011 + 0 NA intron (ENSMUSG00000029217.16, intron 1 of 2) protein_coding-intron (ENSMUSG00000029217.16, intron 1 of 18) -23680 ENSMUSG00000029217.16 ENSMUSG00000029217 ENSMUST00000202547 Tec protein_coding Interval_66264 chr16 32714869 32716288 + 0 NA Intergenic Intergenic -11088 ENSMUSG00000098225.1 ENSMUSG00000098225 ENSMUST00000182938 Gm9556 processed_pseudogene Interval_114374 chr4 74389987 74390507 + 0 NA intron (ENSMUSG00000028397.13, intron 19 of 21) protein_coding-intron (ENSMUSG00000028397.13, intron 19 of 21) 127438 ENSMUSG00000028397.13 ENSMUSG00000028397 ENSMUST00000150439 Kdm4c protein_coding Interval_171984 chr9 123175943 123176126 + 0 NA intron (ENSMUSG00000035498.10, intron 1 of 2) protein_coding-intron (ENSMUSG00000035498.10, intron 7 of 8) 2072 ENSMUSG00000035498.10 ENSMUSG00000035498 ENSMUST00000140915 Cdcp1 protein_coding Interval_13103 chr10 11349963 11350399 + 0 NA intron (ENSMUSG00000055493.4, intron 1 of 1) protein_coding-intron (ENSMUSG00000055493.4, intron 1 of 3) 6728 ENSMUSG00000055493.4 ENSMUSG00000055493 ENSMUST00000161438 Epm2a protein_coding Interval_164266 chr9 34752664 34753013 + 0 NA intron (ENSMUSG00000032036.15, intron 1 of 15) protein_coding-intron (ENSMUSG00000032036.15, intron 1 of 16) 176671 ENSMUSG00000053889.5 ENSMUSG00000053889 ENSMUST00000066604 Kirrel3os antisense Interval_130681 chr5 129715044 129716020 + 0 NA promoter-TSS (ENSMUSG00000034211.14) protein_coding-promoter-TSS (ENSMUSG00000034211.14) 14 ENSMUSG00000034211.14 ENSMUSG00000034211 ENSMUST00000138812 Mrps17 protein_coding Interval_48615 chr13 100677345 100678641 + 0 NA exon (ENSMUSG00000048924.14, exon 2 of 12) protein_coding-exon (ENSMUSG00000048924.14, exon 2 of 12) 8276 ENSMUSG00000048924.14 ENSMUSG00000048924 ENSMUST00000057325 Ccdc125 protein_coding Interval_63549 chr15 101977030 101977826 + 0 NA Intergenic Intergenic -23141 ENSMUSG00000050463.9 ENSMUSG00000050463 ENSMUST00000164932 Krt78 protein_coding Interval_29869 chr11 87433080 87434633 + 0 NA exon (ENSMUSG00000010342.16, exon 2 of 31) protein_coding-exon (ENSMUSG00000010342.16, exon 2 of 31) 6265 ENSMUSG00000010342.16 ENSMUSG00000010342 ENSMUST00000124255 Tex14 protein_coding Interval_63151 chr15 99406587 99407647 + 0 NA promoter-TSS (ENSMUSG00000023010.15) protein_coding-promoter-TSS (ENSMUSG00000023010.15) -150 ENSMUSG00000023010.15 ENSMUSG00000023010 ENSMUST00000231173 Tmbim6 protein_coding Interval_106084 chr3 92764570 92764975 + 0 NA intron (ENSMUSG00000049593.8, intron 1 of 1) protein_coding-intron (ENSMUSG00000049593.8, intron 1 of 1) 293 ENSMUSG00000049593.8 ENSMUSG00000049593 ENSMUST00000051521 Lce1h protein_coding Interval_39243 chr12 86152969 86153164 + 0 NA intron (ENSMUSG00000007867.9, intron 5 of 8) protein_coding-intron (ENSMUSG00000007867.9, intron 4 of 7) -16275 ENSMUSG00000097543.1 ENSMUSG00000097543 ENSMUST00000181667 Gm805 lincRNA Interval_73336 chr17 36270736 36272274 + 0 NA promoter-TSS (ENSMUSG00000045409.16) protein_coding-promoter-TSS (ENSMUSG00000045409.16) -2810 ENSMUSG00000045409.16 ENSMUSG00000045409 ENSMUST00000172832 Trim39 protein_coding Interval_123169 chr5 30281079 30281823 + 0 NA promoter-TSS (ENSMUSG00000073102.7) protein_coding-promoter-TSS (ENSMUSG00000073102.7) -41003 ENSMUSG00000085099.1 ENSMUSG00000085099 ENSMUST00000137940 Gm16288 processed_pseudogene Interval_105522 chr3 87241009 87241723 + 0 NA Intergenic Intergenic 22372 ENSMUSG00000015852.13 ENSMUSG00000015852 ENSMUST00000146512 Fcrls protein_coding Interval_9237 chr1 155351677 155351898 + 0 NA intron (ENSMUSG00000026469.14, intron 2 of 6) protein_coding-intron (ENSMUSG00000026469.14, intron 2 of 14) 35821 ENSMUSG00000093286.1 ENSMUSG00000093286 ENSMUST00000175545 Gm22569 miRNA Interval_136987 chr6 65596773 65597566 + 0 NA promoter-TSS (ENSMUSG00000044162.12) protein_coding-promoter-TSS (ENSMUSG00000044162.12) 71856 ENSMUSG00000044162.12 ENSMUSG00000044162 ENSMUST00000204241 Tnip3 protein_coding Interval_122514 chr5 23507349 23509134 + 0 NA intron (ENSMUSG00000062604.11, intron 14 of 14) protein_coding-intron (ENSMUSG00000062604.11, intron 14 of 14) -20518 ENSMUSG00000088170.1 ENSMUSG00000088170 ENSMUST00000157545 Gm25219 misc_RNA Interval_4498 chr1 74582297 74582969 + 0 NA exon (ENSMUSG00000026135.17, exon 2 of 2) protein_coding-exon (ENSMUSG00000026135.17, exon 2 of 2) 4339 ENSMUSG00000093155.1 ENSMUSG00000093155 ENSMUST00000175414 Gm25035 miRNA Interval_144628 chr7 27221933 27223501 + 0 NA intron (ENSMUSG00000003752.9, intron 1 of 6) protein_coding-intron (ENSMUSG00000003752.9, intron 1 of 6) 5944 ENSMUSG00000003752.9 ENSMUSG00000003752 ENSMUST00000206441 Itpkc protein_coding Interval_2634 chr1 42703433 42704592 + 0 NA TTS (ENSMUSG00000045515.4) protein_coding-TTS (ENSMUSG00000045515.4) 4040 ENSMUSG00000097063.3 ENSMUSG00000097063 ENSMUST00000192894 Pantr2 processed_transcript Interval_42683 chr13 17927741 17928151 + 0 NA intron (ENSMUSG00000008859.8, intron 1 of 4) protein_coding-intron (ENSMUSG00000008859.8, intron 1 of 4) -4440 ENSMUSG00000113100.1 ENSMUSG00000113100 ENSMUST00000221683 Gm48754 antisense Interval_121233 chr4 154259581 154259787 + 0 NA intron (ENSMUSG00000057751.14, intron 14 of 27) protein_coding-intron (ENSMUSG00000057751.14, intron 17 of 36) 10388 ENSMUSG00000057751.14 ENSMUSG00000057751 ENSMUST00000142110 Megf6 protein_coding Interval_27668 chr11 69389602 69390777 + 0 NA Intergenic Intergenic 5442 ENSMUSG00000044795.12 ENSMUSG00000044795 ENSMUST00000051620 Cyb5d1 protein_coding Interval_145116 chr7 30121391 30122404 + 0 NA promoter-TSS (ENSMUSG00000074220.10) protein_coding-promoter-TSS (ENSMUSG00000074220.10) -3718 ENSMUSG00000074220.10 ENSMUSG00000074220 ENSMUST00000156543 Zfp382 protein_coding Interval_115156 chr4 92003140 92003871 + 0 NA Intergenic Intergenic -63553 ENSMUSG00000087517.1 ENSMUSG00000087517 ENSMUST00000151367 4930577H14Rik lincRNA Interval_58606 chr15 36517536 36518221 + 0 NA intron (ENSMUSG00000013611.14, intron 11 of 13) protein_coding-intron (ENSMUSG00000013611.14, intron 11 of 13) -14447 ENSMUSG00000115084.1 ENSMUSG00000115084 ENSMUST00000228391 Gm49246 TEC Interval_24341 chr11 32532477 32534286 + 0 NA promoter-TSS (ENSMUSG00000020272.8) protein_coding-promoter-TSS (ENSMUSG00000020272.8) -1300 ENSMUSG00000044056.3 ENSMUSG00000044056 ENSMUST00000109377 Efcab9 protein_coding Interval_138277 chr6 86815051 86816896 + 0 NA Intergenic Intergenic -22409 ENSMUSG00000029994.17 ENSMUSG00000029994 ENSMUST00000129772 Anxa4 protein_coding Interval_87154 chr19 46496954 46497709 + 0 NA Intergenic Intergenic -17329 ENSMUSG00000025034.9 ENSMUSG00000025034 ENSMUST00000235934 Trim8 protein_coding Interval_62282 chr15 89429003 89430566 + 0 NA promoter-TSS (ENSMUSG00000116461.1) protein_coding-promoter-TSS (ENSMUSG00000116461.1) -88 ENSMUSG00000116461.1 ENSMUSG00000116461 ENSMUST00000052315 Gm44502 protein_coding Interval_72441 chr17 29828753 29829013 + 0 NA TTS (ENSMUSG00000043557.16) protein_coding-TTS (ENSMUSG00000043557.16) -9496 ENSMUSG00000117489.1 ENSMUSG00000117489 ENSMUST00000234919 Gm50016 lincRNA Interval_24693 chr11 35945128 35945766 + 0 NA intron (ENSMUSG00000018849.6, intron 1 of 22) protein_coding-intron (ENSMUSG00000018849.6, intron 1 of 22) -50607 ENSMUSG00000081571.1 ENSMUSG00000081571 ENSMUST00000117261 Gm12125 processed_pseudogene Interval_84893 chr19 18653553 18654512 + 0 NA Intergenic Intergenic -17297 ENSMUSG00000024726.10 ENSMUSG00000024726 ENSMUST00000236401 Carnmt1 protein_coding Interval_92390 chr2 59437817 59439067 + 0 NA Intergenic Intergenic -38661 ENSMUSG00000080982.1 ENSMUSG00000080982 ENSMUST00000118339 Gm13549 processed_pseudogene Interval_96010 chr2 119147207 119147484 + 0 NA promoter-TSS (ENSMUSG00000070730.11) protein_coding-promoter-TSS (ENSMUSG00000070730.11) 91 ENSMUSG00000070730.11 ENSMUSG00000070730 ENSMUST00000139519 Rmdn3 protein_coding Interval_27177 chr11 63805125 63805626 + 0 NA Intergenic Intergenic 12925 ENSMUSG00000083142.1 ENSMUSG00000083142 ENSMUST00000121054 Gm12288 processed_pseudogene Interval_73745 chr17 43147242 43148523 + 0 NA intron (ENSMUSG00000117011.1, intron 5 of 5) lincRNA-intron (ENSMUSG00000117011.1, intron 5 of 5) 10384 ENSMUSG00000117011.1 ENSMUSG00000117011 ENSMUST00000232795 E130008D07Rik lincRNA Interval_129828 chr5 122613876 122614852 + 0 NA promoter-TSS (ENSMUSG00000029469.14) protein_coding-promoter-TSS (ENSMUSG00000029469.14) -6995 ENSMUSG00000029469.14 ENSMUSG00000029469 ENSMUST00000136024 Ift81 protein_coding Interval_89617 chr2 23320733 23322131 + 0 NA exon (ENSMUSG00000069132.3, exon 1 of 2) protein_coding-exon (ENSMUSG00000069132.3, exon 1 of 2) 186 ENSMUSG00000069132.3 ENSMUSG00000069132 ENSMUST00000102945 Nxph2 protein_coding Interval_164615 chr9 40074013 40075295 + 0 NA exon (ENSMUSG00000049010.6, exon 1 of 1) protein_coding-exon (ENSMUSG00000049010.6, exon 1 of 1) 825 ENSMUSG00000049010.6 ENSMUSG00000049010 ENSMUST00000054051 Olfr982 protein_coding Interval_145115 chr7 30117988 30118190 + 0 NA Intergenic Intergenic -7526 ENSMUSG00000074220.10 ENSMUSG00000074220 ENSMUST00000156543 Zfp382 protein_coding Interval_43986 chr13 38785143 38787264 + 0 NA intron (ENSMUSG00000114319.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000114319.1, intron 1 of 1) 10379 ENSMUSG00000114845.1 ENSMUSG00000114845 ENSMUST00000224482 Gm47511 lincRNA Interval_163982 chr9 30299969 30300419 + 0 NA Intergenic Intergenic -8220 ENSMUSG00000096018.1 ENSMUSG00000096018 ENSMUST00000179026 Gm26435 snRNA Interval_112975 chr4 46554121 46555111 + 0 NA intron (ENSMUSG00000028337.14, intron 2 of 7) protein_coding-intron (ENSMUSG00000028337.14, intron 3 of 12) -18494 ENSMUSG00000039853.18 ENSMUSG00000039853 ENSMUST00000142606 Trim14 protein_coding Interval_53775 chr14 61671822 61672129 + 0 NA intron (ENSMUSG00000097589.9, intron 1 of 2) processed_transcript-intron (ENSMUSG00000097589.9, intron 1 of 6) -1844 ENSMUSG00000103869.1 ENSMUSG00000103869 ENSMUST00000195332 Gm37420 TEC Interval_16336 chr10 62313774 62314810 + 0 NA intron (ENSMUSG00000037012.18, intron 2 of 6) protein_coding-intron (ENSMUSG00000037012.18, intron 3 of 19) -23963 ENSMUSG00000037012.18 ENSMUSG00000037012 ENSMUST00000149534 Hk1 protein_coding Interval_37265 chr12 63813219 63813456 + 0 NA Intergenic Intergenic -114617 ENSMUSG00000113684.1 ENSMUSG00000113684 ENSMUST00000222419 Gm48418 processed_pseudogene Interval_146633 chr7 48909878 48910332 + 0 NA promoter-TSS (ENSMUSG00000110093.1) lincRNA-promoter-TSS (ENSMUSG00000110093.1) -43 ENSMUSG00000110093.1 ENSMUSG00000110093 ENSMUST00000209439 Gm45282 lincRNA Interval_151251 chr7 120203414 120204505 + 0 NA promoter-TSS (ENSMUSG00000062017.15) protein_coding-promoter-TSS (ENSMUSG00000062017.15) -1848 ENSMUSG00000030905.5 ENSMUSG00000030905 ENSMUST00000134067 Crym protein_coding Interval_101013 chr2 174257375 174257844 + 0 NA Intergenic Intergenic 9516 ENSMUSG00000065521.1 ENSMUSG00000065521 ENSMUST00000083587 Mir296 miRNA Interval_15269 chr10 43953530 43954233 + 0 NA intron (ENSMUSG00000019864.14, intron 2 of 2) protein_coding-intron (ENSMUSG00000019866.15, intron 19 of 19) 5985 ENSMUSG00000019864.14 ENSMUSG00000019864 ENSMUST00000214453 Rtn4ip1 protein_coding Interval_31522 chr11 101148822 101149940 + 0 NA Intergenic Intergenic -6526 ENSMUSG00000045007.9 ENSMUSG00000045007 ENSMUST00000043654 Tubg2 protein_coding Interval_22384 chr11 9347500 9348588 + 0 NA intron (ENSMUSG00000004668.14, intron 28 of 61) protein_coding-intron (ENSMUSG00000004668.14, intron 28 of 61) 154593 ENSMUSG00000004668.14 ENSMUSG00000004668 ENSMUST00000151522 Abca13 protein_coding Interval_56571 chr14 120401072 120401499 + 0 NA intron (ENSMUSG00000022139.17, intron 1 of 1) protein_coding-intron (ENSMUSG00000022139.17, intron 7 of 8) -12300 ENSMUSG00000097903.2 ENSMUSG00000097903 ENSMUST00000181685 Gm26679 antisense Interval_6715 chr1 118949348 118949555 + 0 NA intron (ENSMUSG00000048402.14, intron 2 of 6) protein_coding-intron (ENSMUSG00000048402.14, intron 2 of 13) -4769 ENSMUSG00000098273.1 ENSMUSG00000098273 ENSMUST00000183982 Mir6346 miRNA Interval_60410 chr15 73576047 73577200 + 0 NA TTS (ENSMUSG00000079020.9) protein_coding-TTS (ENSMUSG00000079020.9) 12339 ENSMUSG00000079020.9 ENSMUSG00000079020 ENSMUST00000150409 Slc45a4 protein_coding Interval_64447 chr16 11450556 11450926 + 0 NA intron (ENSMUSG00000071669.14, intron 13 of 20) protein_coding-intron (ENSMUSG00000071669.14, intron 6 of 13) 45565 ENSMUSG00000082653.1 ENSMUSG00000082653 ENSMUST00000117770 Gm15897 processed_pseudogene Interval_144641 chr7 27298228 27298462 + 0 NA Intergenic Intergenic -25953 ENSMUSG00000083622.1 ENSMUSG00000083622 ENSMUST00000122093 Gm15570 processed_pseudogene Interval_17496 chr10 77235119 77235964 + 0 NA Intergenic Intergenic 23682 ENSMUSG00000078444.3 ENSMUSG00000078444 ENSMUST00000105408 Gm10941 bidirectional_promoter_lncRNA Interval_102052 chr3 16191949 16192148 + 0 NA intron (ENSMUSG00000047213.14, intron 5 of 5) protein_coding-intron (ENSMUSG00000047213.14, intron 3 of 4) 8812 ENSMUSG00000047213.14 ENSMUSG00000047213 ENSMUST00000108346 Ythdf3 protein_coding Interval_108337 chr3 124428570 124428811 + 0 NA Intergenic Intergenic -2699 ENSMUSG00000027973.11 ENSMUSG00000027973 ENSMUST00000198630 1700006A11Rik protein_coding Interval_124520 chr5 50002165 50002757 + 0 NA intron (ENSMUSG00000029090.12, intron 7 of 18) protein_coding-intron (ENSMUSG00000029090.12, intron 7 of 18) 56184 ENSMUSG00000029090.12 ENSMUSG00000029090 ENSMUST00000199132 Adgra3 protein_coding Interval_61082 chr15 79126363 79127171 + 0 NA intron (ENSMUSG00000033039.10, intron 1 of 8) protein_coding-intron (ENSMUSG00000033039.10, intron 8 of 15) -4919 ENSMUSG00000033039.10 ENSMUSG00000033039 ENSMUST00000230202 Micall1 protein_coding Interval_6844 chr1 120052530 120053632 + 0 NA intron (ENSMUSG00000026387.15, intron 7 of 12) protein_coding-intron (ENSMUSG00000026387.15, intron 8 of 13) 20993 ENSMUSG00000050777.7 ENSMUSG00000050777 ENSMUST00000056089 Tmem37 protein_coding Interval_156226 chr8 46241775 46242161 + 0 NA Intergenic Intergenic 12174 ENSMUSG00000092897.1 ENSMUSG00000092897 ENSMUST00000175156 Gm23812 miRNA Interval_137005 chr6 65967475 65967813 + 0 NA Intergenic Intergenic 15035 ENSMUSG00000036463.8 ENSMUSG00000036463 ENSMUST00000043382 4930544G11Rik protein_coding Interval_42958 chr13 21917087 21917322 + 0 NA Intergenic Intergenic 7812 ENSMUSG00000105839.1 ENSMUSG00000105839 ENSMUST00000196554 Gm44456 miRNA Interval_5644 chr1 90503204 90505508 + 0 NA Intergenic Intergenic -16140 ENSMUSG00000103292.1 ENSMUSG00000103292 ENSMUST00000192105 Gm35048 TEC Interval_29638 chr11 85733800 85735747 + 0 NA intron (ENSMUSG00000059439.15, intron 1 of 4) protein_coding-intron (ENSMUSG00000059439.15, intron 23 of 24) -15029 ENSMUSG00000086199.7 ENSMUSG00000086199 ENSMUST00000146806 Bcas3os1 antisense Interval_132108 chr5 142805694 142807029 + 0 NA intron (ENSMUSG00000039477.16, intron 2 of 2) protein_coding-intron (ENSMUSG00000039477.16, intron 2 of 15) -40339 ENSMUSG00000039477.16 ENSMUSG00000039477 ENSMUST00000198181 Tnrc18 protein_coding Interval_129768 chr5 122209405 122210427 + 0 NA promoter-TSS (ENSMUSG00000064267.13) protein_coding-promoter-TSS (ENSMUSG00000064267.13) -197 ENSMUSG00000064267.13 ENSMUSG00000064267 ENSMUST00000100747 Hvcn1 protein_coding Interval_82456 chr18 74197236 74197502 + 0 NA intron (ENSMUSG00000036223.16, intron 5 of 5) protein_coding-intron (ENSMUSG00000036223.16, intron 6 of 6) 10378 ENSMUSG00000036223.16 ENSMUSG00000036223 ENSMUST00000237276 Ska1 protein_coding Interval_174081 chrX 134488889 134489631 + 0 NA promoter-TSS (ENSMUSG00000070641.3) processed_pseudogene-promoter-TSS (ENSMUSG00000070641.3) -110 ENSMUSG00000070641.3 ENSMUSG00000070641 ENSMUST00000094550 Gm16410 processed_pseudogene Interval_63806 chr15 103552037 103552714 + 0 NA Intergenic Intergenic 12681 ENSMUSG00000022491.5 ENSMUSG00000022491 ENSMUST00000228060 Glycam1 protein_coding Interval_163541 chr9 21987819 21991974 + 0 NA promoter-TSS (ENSMUSG00000040146.9) protein_coding-promoter-TSS (ENSMUSG00000040146.9) -481 ENSMUSG00000040146.9 ENSMUSG00000040146 ENSMUST00000213130 Rgl3 protein_coding Interval_5038 chr1 84559124 84560244 + 0 NA intron (ENSMUSG00000036766.12, intron 4 of 4) protein_coding-intron (ENSMUSG00000036766.12, intron 4 of 12) 64157 ENSMUSG00000036766.12 ENSMUSG00000036766 ENSMUST00000191546 Dner protein_coding Interval_62243 chr15 89128004 89129145 + 0 NA promoter-TSS (ENSMUSG00000062906.12) protein_coding-promoter-TSS (ENSMUSG00000062906.12) -1084 ENSMUSG00000062906.12 ENSMUSG00000062906 ENSMUST00000153195 Hdac10 protein_coding Interval_88440 chr2 5077583 5078628 + 0 NA Intergenic Intergenic 40825 ENSMUSG00000086430.1 ENSMUSG00000086430 ENSMUST00000145585 4930551O13Rik antisense Interval_52109 chr14 36530390 36531044 + 0 NA Intergenic Intergenic -81400 ENSMUSG00000088766.1 ENSMUSG00000088766 ENSMUST00000158141 Gm24394 snoRNA Interval_37864 chr12 72680882 72681138 + 0 NA Intergenic Intergenic -16256 ENSMUSG00000021094.10 ENSMUSG00000021094 ENSMUST00000221674 Dhrs7 protein_coding Interval_171177 chr9 114990343 114991674 + 0 NA intron (ENSMUSG00000040875.12, intron 1 of 11) protein_coding-intron (ENSMUSG00000040875.12, intron 1 of 11) -7608 ENSMUSG00000040875.12 ENSMUSG00000040875 ENSMUST00000182413 Osbpl10 protein_coding Interval_63908 chr16 4521246 4521449 + 0 NA intron (ENSMUSG00000022519.14, intron 1 of 1) protein_coding-intron (ENSMUSG00000022519.14, intron 1 of 1) -17961 ENSMUSG00000083585.1 ENSMUSG00000083585 ENSMUST00000122114 Gm15885 processed_pseudogene Interval_3945 chr1 64990347 64990612 + 0 NA Intergenic Intergenic 4125 ENSMUSG00000084416.3 ENSMUSG00000084416 ENSMUST00000120360 Rpl10a-ps1 processed_pseudogene Interval_77980 chr18 6387136 6387605 + 0 NA Intergenic Intergenic -15710 ENSMUSG00000095614.1 ENSMUSG00000095614 ENSMUST00000179994 Gm6291 processed_pseudogene Interval_133039 chr5 149454035 149454712 + 0 NA intron (ENSMUSG00000029660.10, intron 2 of 5) protein_coding-intron (ENSMUSG00000029660.10, intron 3 of 6) 12512 ENSMUSG00000107164.1 ENSMUSG00000107164 ENSMUST00000201035 4933425D22Rik sense_intronic Interval_144196 chr7 19903462 19904105 + 0 NA exon (ENSMUSG00000040511.14, exon 8 of 8) protein_coding-exon (ENSMUSG00000040511.14, exon 8 of 8) 6449 ENSMUSG00000108942.1 ENSMUSG00000108942 ENSMUST00000207134 Gm44660 TEC Interval_156104 chr8 44690925 44691226 + 0 NA Intergenic Intergenic 89242 ENSMUSG00000088523.1 ENSMUSG00000088523 ENSMUST00000157898 Gm26089 rRNA Interval_2475 chr1 39638623 39638958 + 0 NA intron (ENSMUSG00000050967.5, intron 2 of 3) protein_coding-intron (ENSMUSG00000050967.5, intron 2 of 3) -11386 ENSMUSG00000097083.1 ENSMUSG00000097083 ENSMUST00000181841 D930019O06Rik antisense Interval_14729 chr10 39421085 39421315 + 0 NA intron (ENSMUSG00000019843.14, intron 1 of 2) protein_coding-intron (ENSMUSG00000019843.14, intron 2 of 13) 1191 ENSMUSG00000019843.14 ENSMUSG00000019843 ENSMUST00000123205 Fyn protein_coding Interval_29162 chr11 80872646 80873603 + 0 NA Intergenic Intergenic 14759 ENSMUSG00000053184.15 ENSMUSG00000053184 ENSMUST00000103222 Spaca3 protein_coding Interval_150069 chr7 105589579 105591000 + 0 NA Intergenic Intergenic 9823 ENSMUSG00000030895.9 ENSMUSG00000030895 ENSMUST00000210531 Hpx protein_coding Interval_100529 chr2 169959015 169959593 + 0 NA intron (ENSMUSG00000047907.11, intron 1 of 1) protein_coding-intron (ENSMUSG00000047907.11, intron 1 of 1) 3883 ENSMUSG00000103935.1 ENSMUSG00000103935 ENSMUST00000194482 AY702102 TEC Interval_89722 chr2 24991633 24992048 + 0 NA intron (ENSMUSG00000036833.16, intron 6 of 6) protein_coding-intron (ENSMUSG00000036833.16, intron 8 of 34) 2503 ENSMUSG00000083796.3 ENSMUSG00000083796 ENSMUST00000119442 Gm13369 processed_pseudogene Interval_45103 chr13 52211565 52211811 + 0 NA Intergenic Intergenic 31277 ENSMUSG00000113399.1 ENSMUSG00000113399 ENSMUST00000222876 Gm48199 lincRNA Interval_91530 chr2 41239910 41240156 + 0 NA intron (ENSMUSG00000049252.17, intron 29 of 62) protein_coding-intron (ENSMUSG00000049252.17, intron 32 of 90) 241176 ENSMUSG00000083260.1 ENSMUSG00000083260 ENSMUST00000121274 Gm13460 processed_pseudogene Interval_20998 chr10 123120943 123121237 + 0 NA TTS (ENSMUSG00000020124.10) protein_coding-TTS (ENSMUSG00000020124.10) 57594 ENSMUSG00000112879.1 ENSMUSG00000112879 ENSMUST00000219693 Gm47726 processed_pseudogene Interval_142442 chr6 142351114 142351444 + 0 NA intron (ENSMUSG00000041671.13, intron 4 of 9) protein_coding-intron (ENSMUSG00000030243.16, intron 15 of 15) 5612 ENSMUSG00000041671.13 ENSMUSG00000041671 ENSMUST00000153912 Pyroxd1 protein_coding Interval_158254 chr8 80582051 80582890 + 0 NA Intergenic Intergenic -28610 ENSMUSG00000042353.9 ENSMUSG00000042353 ENSMUST00000039695 Frem3 protein_coding Interval_49104 chr13 108066207 108066949 + 0 NA intron (ENSMUSG00000068184.7, intron 2 of 2) protein_coding-intron (ENSMUSG00000068184.7, intron 3 of 3) 22092 ENSMUSG00000071180.5 ENSMUSG00000071180 ENSMUST00000224390 Smim15 protein_coding Interval_115073 chr4 89274798 89275291 + 0 NA intron (ENSMUSG00000044303.6, intron 2 of 2) protein_coding-intron (ENSMUSG00000044303.6, intron 2 of 2) -2457 ENSMUSG00000087659.7 ENSMUSG00000087659 ENSMUST00000127174 Gm12606 lincRNA Interval_94119 chr2 84459573 84460205 + 0 NA intron (ENSMUSG00000027082.15, intron 1 of 4) protein_coding-intron (ENSMUSG00000027082.15, intron 2 of 8) -1779 ENSMUSG00000027082.15 ENSMUSG00000027082 ENSMUST00000144775 Tfpi protein_coding Interval_63016 chr15 98656912 98657648 + 0 NA TTS (ENSMUSG00000003360.15) protein_coding-TTS (ENSMUSG00000003360.15) 5614 ENSMUSG00000003360.15 ENSMUSG00000003360 ENSMUST00000228973 Ddx23 protein_coding Interval_30357 chr11 93835965 93836210 + 0 NA Intergenic Intergenic 40056 ENSMUSG00000054079.12 ENSMUSG00000054079 ENSMUST00000134807 Utp18 protein_coding Interval_103420 chr3 41463198 41464123 + 0 NA Intergenic Intergenic 18225 ENSMUSG00000105260.1 ENSMUSG00000105260 ENSMUST00000196123 Gm40040 lincRNA Interval_166197 chr9 57439277 57440915 + 0 NA promoter-TSS (ENSMUSG00000063849.6) protein_coding-promoter-TSS (ENSMUSG00000063849.6) -18778 ENSMUSG00000063849.6 ENSMUSG00000063849 ENSMUST00000215299 Ppcdc protein_coding Interval_20773 chr10 120886718 120886929 + 0 NA intron (ENSMUSG00000051236.13, intron 1 of 6) protein_coding-intron (ENSMUSG00000051236.13, intron 1 of 6) -12334 ENSMUSG00000086522.1 ENSMUSG00000086522 ENSMUST00000145987 Gm4473 bidirectional_promoter_lncRNA Interval_57818 chr15 21508169 21508385 + 0 NA intron (ENSMUSG00000040452.9, intron 6 of 12) protein_coding-intron (ENSMUSG00000040452.9, intron 5 of 11) 328120 ENSMUSG00000103296.1 ENSMUSG00000103296 ENSMUST00000195204 Gm38234 TEC Interval_173649 chrX 101478173 101479098 + 0 NA promoter-TSS (ENSMUSG00000083897.1) processed_pseudogene-promoter-TSS (ENSMUSG00000083897.1) -713 ENSMUSG00000083897.1 ENSMUSG00000083897 ENSMUST00000119596 Gm14843 processed_pseudogene Interval_79290 chr18 30120872 30123263 + 0 NA Intergenic Intergenic -145182 ENSMUSG00000117465.1 ENSMUSG00000117465 ENSMUST00000234467 Gm49980 lincRNA Interval_170050 chr9 104075942 104076257 + 0 NA TTS (ENSMUSG00000101152.1) protein_coding-TTS (ENSMUSG00000101152.1) -13194 ENSMUSG00000032557.13 ENSMUSG00000032557 ENSMUST00000214222 Uba5 protein_coding Interval_73994 chr17 45914574 45915806 + 0 NA Intergenic Intergenic 29844 ENSMUSG00000117048.1 ENSMUSG00000117048 ENSMUST00000233085 Gm41584 lincRNA Interval_173344 chrX 82311110 82311298 + 0 NA Intergenic Intergenic 89805 ENSMUSG00000083113.1 ENSMUSG00000083113 ENSMUST00000117120 Rpl10-ps4 processed_pseudogene Interval_63477 chr15 101325935 101327635 + 0 NA intron (ENSMUSG00000116114.1, intron 1 of 4) antisense-intron (ENSMUSG00000116114.1, intron 1 of 4) 10683 ENSMUSG00000116395.1 ENSMUSG00000116395 ENSMUST00000229927 Gm49499 TEC Interval_118015 chr4 128130025 128130995 + 0 NA intron (ENSMUSG00000028804.20, intron 3 of 70) protein_coding-intron (ENSMUSG00000028804.20, intron 3 of 12) 36457 ENSMUSG00000087459.8 ENSMUSG00000087459 ENSMUST00000179945 Csmd2os antisense Interval_59558 chr15 55271958 55272898 + 0 NA Intergenic Intergenic -9825 ENSMUSG00000095792.1 ENSMUSG00000095792 ENSMUST00000179457 Gm26296 snRNA Interval_100919 chr2 173339573 173340650 + 0 NA Intergenic Intergenic -54455 ENSMUSG00000086114.1 ENSMUSG00000086114 ENSMUST00000147357 Gm14642 lincRNA Interval_105814 chr3 89470889 89471305 + 0 NA Intergenic Intergenic 16556 ENSMUSG00000027952.16 ENSMUSG00000027952 ENSMUST00000184515 Pmvk protein_coding Interval_52999 chr14 53101510 53101761 + 0 NA promoter-TSS (ENSMUSG00000092251.3) TR_V_pseudogene-promoter-TSS (ENSMUSG00000092251.3) -166 ENSMUSG00000092251.3 ENSMUSG00000092251 ENSMUST00000185224 Trav9n-1 TR_V_pseudogene Interval_132260 chr5 143688445 143689819 + 0 NA intron (ENSMUSG00000018001.18, intron 4 of 4) protein_coding-intron (ENSMUSG00000018001.18, intron 4 of 12) 38885 ENSMUSG00000051306.7 ENSMUSG00000051306 ENSMUST00000129606 Usp42 protein_coding Interval_94213 chr2 85169540 85170020 + 0 NA intron (ENSMUSG00000075224.10, intron 3 of 3) protein_coding-intron (ENSMUSG00000075224.10, intron 3 of 3) 9002 ENSMUSG00000085135.7 ENSMUSG00000085135 ENSMUST00000139377 Gm13713 antisense Interval_20644 chr10 119935304 119935854 + 0 NA intron (ENSMUSG00000034813.18, intron 4 of 23) protein_coding-intron (ENSMUSG00000034813.18, intron 4 of 22) -83302 ENSMUSG00000085418.1 ENSMUSG00000085418 ENSMUST00000135940 Grip1os1 antisense Interval_162236 chr8 126344301 126345989 + 0 NA intron (ENSMUSG00000057060.8, intron 3 of 7) protein_coding-intron (ENSMUSG00000057060.8, intron 2 of 6) -77383 ENSMUSG00000051671.7 ENSMUSG00000051671 ENSMUST00000211868 Coa6 protein_coding Interval_103635 chr3 51330065 51330537 + 0 NA intron (ENSMUSG00000037174.18, intron 1 of 9) protein_coding-intron (ENSMUSG00000037174.18, intron 1 of 9) -27398 ENSMUSG00000104200.1 ENSMUSG00000104200 ENSMUST00000195224 Gm37399 TEC Interval_120906 chr4 151469608 151469844 + 0 NA TTS (ENSMUSG00000014592.21) protein_coding-TTS (ENSMUSG00000014592.21) 93256 ENSMUSG00000085593.1 ENSMUSG00000085593 ENSMUST00000129097 4930589P08Rik antisense Interval_153022 chr7 140938359 140939523 + 0 NA Intergenic Intergenic -2625 ENSMUSG00000062031.13 ENSMUSG00000062031 ENSMUST00000163094 Pgghg protein_coding Interval_24439 chr11 33265469 33266284 + 0 NA intron (ENSMUSG00000040594.19, intron 23 of 27) protein_coding-intron (ENSMUSG00000040594.19, intron 23 of 27) 10861 ENSMUSG00000098456.1 ENSMUSG00000098456 ENSMUST00000183831 Gm12117 protein_coding Interval_52295 chr14 44023262 44024084 + 0 NA Intergenic Intergenic -1215 ENSMUSG00000090051.1 ENSMUSG00000090051 ENSMUST00000159783 Gm8194 processed_pseudogene Interval_173131 chrX 73063902 73064718 + 0 NA promoter-TSS (ENSMUSG00000046287.7) protein_coding-promoter-TSS (ENSMUSG00000046287.7) -477 ENSMUSG00000046287.7 ENSMUSG00000046287 ENSMUST00000060418 Pnma3 protein_coding Interval_126190 chr5 81794269 81795121 + 0 NA exon (ENSMUSG00000037605.16, exon 25 of 25) protein_coding-exon (ENSMUSG00000037605.16, exon 25 of 25) 3134 ENSMUSG00000037605.16 ENSMUSG00000037605 ENSMUST00000201803 Adgrl3 protein_coding Interval_172135 chrX 7883824 7884552 + 0 NA promoter-TSS (ENSMUSG00000031156.18) protein_coding-promoter-TSS (ENSMUSG00000031156.18) 5570 ENSMUSG00000031155.17 ENSMUSG00000031155 ENSMUST00000145177 Pim2 protein_coding Interval_103449 chr3 41623315 41623912 + 0 NA Intergenic Intergenic 25637 ENSMUSG00000102436.1 ENSMUSG00000102436 ENSMUST00000193690 Gm38047 TEC Interval_60933 chr15 77970046 77971441 + 0 NA promoter-TSS (ENSMUSG00000016554.9) protein_coding-promoter-TSS (ENSMUSG00000016554.9) -6971 ENSMUSG00000016554.9 ENSMUSG00000016554 ENSMUST00000229713 Eif3d protein_coding Interval_2069 chr1 36239799 36240847 + 0 NA intron (ENSMUSG00000037470.14, intron 1 of 18) protein_coding-intron (ENSMUSG00000037470.14, intron 1 of 40) 4397 ENSMUSG00000037470.14 ENSMUSG00000037470 ENSMUST00000192159 Uggt1 protein_coding Interval_91734 chr2 48906136 48906443 + 0 NA intron (ENSMUSG00000026761.12, intron 3 of 3) protein_coding-intron (ENSMUSG00000026761.12, intron 13 of 13) 3724 ENSMUSG00000026761.12 ENSMUSG00000026761 ENSMUST00000123271 Orc4 protein_coding Interval_5866 chr1 92790949 92791676 + 0 NA Intergenic Intergenic -30832 ENSMUSG00000099665.1 ENSMUSG00000099665 ENSMUST00000187845 Gm29482 lincRNA Interval_40658 chr12 106527646 106528433 + 0 NA Intergenic Intergenic 18287 ENSMUSG00000091887.1 ENSMUSG00000091887 ENSMUST00000163501 Gm17053 processed_pseudogene Interval_79630 chr18 34098781 34099266 + 0 NA Intergenic Intergenic 5578 ENSMUSG00000077263.1 ENSMUSG00000077263 ENSMUST00000104075 Gm24432 snoRNA Interval_119855 chr4 140514935 140515877 + 0 NA exon (ENSMUSG00000040964.16, exon 28 of 28) protein_coding-exon (ENSMUSG00000040964.16, exon 28 of 28) -69242 ENSMUSG00000118416.1 ENSMUSG00000118416 ENSMUST00000238366 Gm50453 unitary_pseudogene Interval_138967 chr6 93885222 93885486 + 0 NA intron (ENSMUSG00000045095.16, intron 2 of 24) protein_coding-intron (ENSMUSG00000045095.16, intron 2 of 21) -5261 ENSMUSG00000089069.1 ENSMUSG00000089069 ENSMUST00000158444 Gm22840 snoRNA Interval_144465 chr7 25305603 25306608 + 0 NA promoter-TSS (ENSMUSG00000043843.17) protein_coding-promoter-TSS (ENSMUSG00000043843.17) -3 ENSMUSG00000043843.17 ENSMUSG00000043843 ENSMUST00000108409 Tmem145 protein_coding Interval_80158 chr18 37923616 37924567 + 0 NA intron (ENSMUSG00000024456.16, intron 1 of 28) protein_coding-intron (ENSMUSG00000024456.16, intron 1 of 27) 4273 ENSMUSG00000117686.1 ENSMUSG00000117686 ENSMUST00000236273 Gm50122 processed_pseudogene Interval_880 chr1 12933120 12933344 + 0 NA intron (ENSMUSG00000025938.16, intron 4 of 9) protein_coding-intron (ENSMUSG00000025938.16, intron 3 of 7) 57945 ENSMUSG00000025938.16 ENSMUSG00000025938 ENSMUST00000191566 Slco5a1 protein_coding Interval_64587 chr16 13531258 13531724 + 0 NA promoter-TSS (ENSMUSG00000077488.1) snoRNA-promoter-TSS (ENSMUSG00000077488.1) 60 ENSMUSG00000077488.1 ENSMUSG00000077488 ENSMUST00000104300 Gm25276 snoRNA Interval_79 GL456216.1 38660 39090 + 0 NA NA NA NA NA Interval_44830 chr13 48961789 48962969 + 0 NA intron (ENSMUSG00000038014.7, intron 1 of 17) protein_coding-intron (ENSMUSG00000038014.7, intron 1 of 17) 5638 ENSMUSG00000038014.7 ENSMUSG00000038014 ENSMUST00000060805 Fam120a protein_coding Interval_87420 chr19 49885331 49885771 + 0 NA Intergenic Intergenic 17196 ENSMUSG00000117697.1 ENSMUSG00000117697 ENSMUST00000236762 Siah1-ps1 processed_pseudogene Interval_144676 chr7 27473228 27475093 + 0 NA intron (ENSMUSG00000055200.7, intron 1 of 1) protein_coding-intron (ENSMUSG00000055200.7, intron 1 of 1) 392 ENSMUSG00000055200.7 ENSMUSG00000055200 ENSMUST00000068641 Sertad3 protein_coding Interval_105951 chr3 90272006 90272593 + 0 NA TTS (ENSMUSG00000042404.16) protein_coding-TTS (ENSMUSG00000042404.16) 2150 ENSMUSG00000099199.1 ENSMUSG00000099199 ENSMUST00000183900 Mir7012 miRNA Interval_78595 chr18 15008770 15009050 + 0 NA intron (ENSMUSG00000036225.15, intron 1 of 4) protein_coding-intron (ENSMUSG00000036225.15, intron 1 of 4) -2336 ENSMUSG00000071867.5 ENSMUSG00000071867 ENSMUST00000096579 Mrpl27-ps processed_pseudogene Interval_33882 chr11 119187204 119187781 + 0 NA intron (ENSMUSG00000039976.4, intron 3 of 11) protein_coding-intron (ENSMUSG00000039976.4, intron 3 of 11) -2976 ENSMUSG00000085548.1 ENSMUSG00000085548 ENSMUST00000151091 Gm11753 sense_intronic Interval_54114 chr14 65416763 65417453 + 0 NA intron (ENSMUSG00000045731.6, intron 1 of 3) protein_coding-intron (ENSMUSG00000045731.6, intron 1 of 3) 8052 ENSMUSG00000045731.6 ENSMUSG00000045731 ENSMUST00000224594 Pnoc protein_coding Interval_15050 chr10 42221069 42221510 + 0 NA intron (ENSMUSG00000048756.11, intron 2 of 2) protein_coding-intron (ENSMUSG00000048756.11, intron 2 of 3) 37077 ENSMUSG00000048756.11 ENSMUSG00000048756 ENSMUST00000105501 Foxo3 protein_coding Interval_72803 chr17 32256419 32259136 + 0 NA intron (ENSMUSG00000024002.18, intron 1 of 10) protein_coding-intron (ENSMUSG00000024002.18, intron 1 of 19) 15614 ENSMUSG00000116414.2 ENSMUSG00000116414 ENSMUST00000230961 Gm4432 processed_pseudogene Interval_110491 chr3 159614943 159615402 + 0 NA intron (ENSMUSG00000028174.12, intron 9 of 14) protein_coding-intron (ENSMUSG00000028174.12, intron 9 of 13) 15954 ENSMUSG00000028174.12 ENSMUSG00000028174 ENSMUST00000029824 Rpe65 protein_coding Interval_52652 chr14 48255919 48256790 + 0 NA exon (ENSMUSG00000021846.9, exon 6 of 6) protein_coding-exon (ENSMUSG00000021846.9, exon 6 of 6) 29153 ENSMUSG00000063885.5 ENSMUSG00000063885 ENSMUST00000181413 Gm6498 transcribed_processed_pseudogene Interval_103010 chr3 34441610 34441804 + 0 NA intron (ENSMUSG00000105265.4, intron 2 of 2) processed_transcript-intron (ENSMUSG00000105265.4, intron 2 of 4) -6610 ENSMUSG00000092242.1 ENSMUSG00000092242 ENSMUST00000174440 Gm20515 lincRNA Interval_17307 chr10 75754461 75754677 + 0 NA TTS (ENSMUSG00000020196.10) protein_coding-TTS (ENSMUSG00000020196.10) -12592 ENSMUSG00000112789.1 ENSMUSG00000112789 ENSMUST00000219818 Gm19326 processed_pseudogene Interval_84477 chr19 11661148 11661401 + 0 NA promoter-TSS (ENSMUSG00000055895.6) protein_coding-promoter-TSS (ENSMUSG00000055895.6) -758 ENSMUSG00000055895.6 ENSMUSG00000055895 ENSMUST00000121793 Oosp2 protein_coding Interval_174501 chrX 153668009 153669826 + 0 NA Intergenic Intergenic 12311 ENSMUSG00000083488.1 ENSMUSG00000083488 ENSMUST00000118553 Gm8534 processed_pseudogene Interval_124441 chr5 47273863 47274422 + 0 NA Intergenic Intergenic 120491 ENSMUSG00000104660.1 ENSMUSG00000104660 ENSMUST00000196294 Gm43601 TEC Interval_80983 chr18 52255621 52256245 + 0 NA Intergenic Intergenic -75616 ENSMUSG00000024510.6 ENSMUSG00000024510 ENSMUST00000025388 Ftmt protein_coding Interval_90958 chr2 33721500 33721889 + 0 NA Intergenic Intergenic -2795 ENSMUSG00000085463.1 ENSMUSG00000085463 ENSMUST00000130532 9430024E24Rik lincRNA Interval_131572 chr5 138199524 138199832 + 0 NA Intergenic Intergenic 5364 ENSMUSG00000049285.4 ENSMUSG00000049285 ENSMUST00000057773 Mblac1 protein_coding Interval_143101 chr6 149353149 149354025 + 0 NA exon (ENSMUSG00000084083.1, exon 1 of 1) processed_pseudogene-exon (ENSMUSG00000084083.1, exon 1 of 1) 239 ENSMUSG00000084083.1 ENSMUSG00000084083 ENSMUST00000121073 Gm15782 processed_pseudogene Interval_79185 chr18 25515996 25516674 + 0 NA intron (ENSMUSG00000024268.16, intron 3 of 11) protein_coding-intron (ENSMUSG00000024268.16, intron 3 of 12) -15096 ENSMUSG00000024268.16 ENSMUSG00000024268 ENSMUST00000224143 Celf4 protein_coding Interval_40362 chr12 104380792 104382835 + 0 NA intron (ENSMUSG00000079012.11, intron 1 of 4) protein_coding-intron (ENSMUSG00000079012.11, intron 1 of 4) -5351 ENSMUSG00000079012.11 ENSMUSG00000079012 ENSMUST00000168797 Serpina3m protein_coding Interval_43457 chr13 31341385 31341633 + 0 NA Intergenic Intergenic -10742 ENSMUSG00000087662.2 ENSMUSG00000087662 ENSMUST00000129791 Gm11373 lincRNA Interval_147695 chr7 72119255 72119539 + 0 NA intron (ENSMUSG00000032776.9, intron 19 of 22) protein_coding-intron (ENSMUSG00000032776.9, intron 19 of 22) 8636 ENSMUSG00000108427.1 ENSMUSG00000108427 ENSMUST00000205418 Gm36696 antisense Interval_100925 chr2 173376457 173377387 + 0 NA Intergenic Intergenic -17644 ENSMUSG00000086114.1 ENSMUSG00000086114 ENSMUST00000147357 Gm14642 lincRNA Interval_136068 chr6 50429219 50430705 + 0 NA intron (ENSMUSG00000029822.15, intron 1 of 3) protein_coding-intron (ENSMUSG00000029822.15, intron 1 of 21) -78005 ENSMUSG00000029822.15 ENSMUSG00000029822 ENSMUST00000154333 Osbpl3 protein_coding Interval_140140 chr6 114777350 114778265 + 0 NA intron (ENSMUSG00000030314.16, intron 20 of 20) protein_coding-intron (ENSMUSG00000030314.16, intron 18 of 18) -11583 ENSMUSG00000107395.1 ENSMUSG00000107395 ENSMUST00000203217 Gm44331 processed_pseudogene Interval_5303 chr1 87378931 87379162 + 0 NA TTS (ENSMUSG00000048000.15) protein_coding-TTS (ENSMUSG00000048000.15) 10343 ENSMUSG00000079436.3 ENSMUSG00000079436 ENSMUST00000174179 Kcnj13 protein_coding Interval_22733 chr11 14138003 14138454 + 0 NA intron (ENSMUSG00000085452.1, intron 2 of 3) lincRNA-intron (ENSMUSG00000085452.1, intron 2 of 3) -23851 ENSMUSG00000081631.1 ENSMUSG00000081631 ENSMUST00000121451 Gm12005 processed_pseudogene Interval_98397 chr2 152064483 152065109 + 0 NA Intergenic Intergenic 12012 ENSMUSG00000085946.1 ENSMUSG00000085946 ENSMUST00000147463 AA387200 antisense Interval_64052 chr16 6503734 6504830 + 0 NA intron (ENSMUSG00000008658.16, intron 3 of 11) protein_coding-intron (ENSMUSG00000008658.16, intron 2 of 14) 528697 ENSMUSG00000101481.1 ENSMUSG00000101481 ENSMUST00000190515 1700123O21Rik sense_intronic Interval_10398 chr1 170410316 170410709 + 0 NA intron (ENSMUSG00000038473.14, intron 2 of 7) protein_coding-intron (ENSMUSG00000038473.14, intron 2 of 3) -89732 ENSMUSG00000038473.14 ENSMUSG00000038473 ENSMUST00000159665 Nos1ap protein_coding Interval_56483 chr14 119071316 119071625 + 0 NA intron (ENSMUSG00000042104.18, intron 10 of 38) protein_coding-intron (ENSMUSG00000042104.18, intron 10 of 11) -27495 ENSMUSG00000087479.1 ENSMUSG00000087479 ENSMUST00000140488 Gm16835 processed_transcript Interval_96842 chr2 128817487 128818921 + 0 NA promoter-TSS (ENSMUSG00000014353.15) protein_coding-promoter-TSS (ENSMUSG00000014353.15) -180 ENSMUSG00000014353.15 ENSMUSG00000014353 ENSMUST00000143686 Tmem87b protein_coding Interval_96659 chr2 126938344 126938904 + 0 NA Intergenic Intergenic -18279 ENSMUSG00000027366.12 ENSMUSG00000027366 ENSMUST00000125592 Sppl2a protein_coding Interval_22031 chr11 5879738 5880155 + 0 NA Intergenic Intergenic -2284 ENSMUSG00000020471.11 ENSMUSG00000020471 ENSMUST00000134957 Pold2 protein_coding Interval_48978 chr13 106679144 106680245 + 0 NA Intergenic Intergenic 81885 ENSMUSG00000114422.1 ENSMUSG00000114422 ENSMUST00000225713 Gm30411 lincRNA Interval_130112 chr5 124356703 124357217 + 0 NA intron (ENSMUSG00000029394.11, intron 1 of 3) protein_coding-intron (ENSMUSG00000029394.11, intron 1 of 3) 6122 ENSMUSG00000029394.11 ENSMUSG00000029394 ENSMUST00000196910 Cdk2ap1 protein_coding Interval_129279 chr5 118637156 118637935 + 0 NA intron (ENSMUSG00000018076.12, intron 2 of 4) protein_coding-intron (ENSMUSG00000018076.12, intron 2 of 30) -6828 ENSMUSG00000107116.1 ENSMUSG00000107116 ENSMUST00000202545 Gm43274 TEC Interval_110598 chr4 4439400 4439612 + 0 NA Intergenic Intergenic 89213 ENSMUSG00000085155.3 ENSMUSG00000085155 ENSMUST00000136880 Gm11780 processed_pseudogene Interval_20399 chr10 117352918 117353686 + 0 NA TTS (ENSMUSG00000055531.12) protein_coding-TTS (ENSMUSG00000055531.12) 23626 ENSMUSG00000055531.12 ENSMUSG00000055531 ENSMUST00000175924 Cpsf6 protein_coding Interval_124141 chr5 38635062 38635918 + 0 NA Intergenic Intergenic 49336 ENSMUSG00000046572.10 ENSMUSG00000046572 ENSMUST00000178760 Zfp518b protein_coding Interval_158576 chr8 84594377 84594994 + 0 NA intron (ENSMUSG00000034656.18, intron 33 of 48) protein_coding-intron (ENSMUSG00000034656.18, intron 31 of 46) 22499 ENSMUSG00000086067.1 ENSMUSG00000086067 ENSMUST00000127527 Gm16183 antisense Interval_109765 chr3 146731934 146732707 + 0 NA TTS (ENSMUSG00000005034.15) protein_coding-TTS (ENSMUSG00000005034.15) 32250 ENSMUSG00000005034.15 ENSMUSG00000005034 ENSMUST00000196344 Prkacb protein_coding Interval_145657 chr7 36886060 36887142 + 0 NA Intergenic Intergenic -135128 ENSMUSG00000089273.1 ENSMUSG00000089273 ENSMUST00000158648 Gm24550 misc_RNA Interval_36724 chr12 52581514 52582425 + 0 NA promoter-TSS (ENSMUSG00000112437.1) lincRNA-promoter-TSS (ENSMUSG00000112437.1) -560 ENSMUSG00000112437.1 ENSMUSG00000112437 ENSMUST00000218869 Gm35188 lincRNA Interval_159297 chr8 92960179 92961867 + 0 NA promoter-TSS (ENSMUSG00000055368.14) protein_coding-promoter-TSS (ENSMUSG00000055368.14) 944 ENSMUSG00000055368.14 ENSMUSG00000055368 ENSMUST00000072939 Slc6a2 protein_coding Interval_115275 chr4 95137768 95137982 + 0 NA TTS (ENSMUSG00000087366.7) antisense-TTS (ENSMUSG00000087366.7) -13865 ENSMUSG00000100189.1 ENSMUSG00000100189 ENSMUST00000191391 Gm28096 sense_intronic Interval_76342 chr17 79230784 79231828 + 0 NA Intergenic Intergenic 26743 ENSMUSG00000117047.1 ENSMUSG00000117047 ENSMUST00000232946 Gm5230 processed_pseudogene Interval_94217 chr2 85246166 85247216 + 0 NA Intergenic Intergenic 13016 ENSMUSG00000085025.1 ENSMUSG00000085025 ENSMUST00000136578 Gm13715 lincRNA Interval_91704 chr2 48441273 48442300 + 0 NA intron (ENSMUSG00000086353.1, intron 1 of 5) lincRNA-intron (ENSMUSG00000086353.1, intron 1 of 5) 15459 ENSMUSG00000086353.1 ENSMUSG00000086353 ENSMUST00000127672 Gm13481 lincRNA Interval_17493 chr10 77225563 77226294 + 0 NA Intergenic Intergenic 33295 ENSMUSG00000078444.3 ENSMUSG00000078444 ENSMUST00000105408 Gm10941 bidirectional_promoter_lncRNA Interval_8797 chr1 151234404 151236154 + 0 NA Intergenic Intergenic 25148 ENSMUSG00000114591.1 ENSMUSG00000114591 ENSMUST00000224757 Gm47996 protein_coding Interval_166332 chr9 58390181 58390366 + 0 NA Intergenic Intergenic 19769 ENSMUSG00000100487.1 ENSMUSG00000100487 ENSMUST00000191141 1700072B07Rik lincRNA Interval_19385 chr10 98749023 98749920 + 0 NA Intergenic Intergenic -49761 ENSMUSG00000112647.1 ENSMUSG00000112647 ENSMUST00000217680 Gm5427 lincRNA Interval_39706 chr12 94053631 94054004 + 0 NA Intergenic Intergenic 5884 ENSMUSG00000113215.1 ENSMUSG00000113215 ENSMUST00000222410 Gm18749 processed_pseudogene Interval_153922 chr8 11187335 11188765 + 0 NA intron (ENSMUSG00000085573.1, intron 1 of 2) antisense-intron (ENSMUSG00000085573.1, intron 1 of 2) 295 ENSMUSG00000085573.1 ENSMUSG00000085573 ENSMUST00000151014 Gm15418 antisense Interval_135795 chr6 47407041 47407320 + 0 NA Intergenic Intergenic 25909 ENSMUSG00000107853.1 ENSMUSG00000107853 ENSMUST00000203098 Gm18584 processed_pseudogene Interval_133842 chr6 13224373 13225228 + 0 NA exon (ENSMUSG00000079679.3, exon 1 of 12) protein_coding-exon (ENSMUSG00000079679.3, exon 1 of 12) -38945 ENSMUSG00000118525.1 ENSMUSG00000118525 ENSMUST00000238854 AC121573.1 processed_pseudogene Interval_119397 chr4 137447546 137450413 + 0 NA Intergenic Intergenic -4305 ENSMUSG00000041399.3 ENSMUSG00000041399 ENSMUST00000048893 1700013G24Rik protein_coding Interval_14442 chr10 33796365 33798011 + 0 NA Intergenic Intergenic -10484 ENSMUSG00000090298.2 ENSMUSG00000090298 ENSMUST00000223295 Sult3a2 protein_coding Interval_60247 chr15 69079358 69079994 + 0 NA intron (ENSMUSG00000022332.8, intron 5 of 6) protein_coding-intron (ENSMUSG00000022332.8, intron 7 of 8) 120145 ENSMUSG00000116092.1 ENSMUSG00000116092 ENSMUST00000230699 Gm49422 sense_intronic Interval_153751 chr8 6637417 6637979 + 0 NA Intergenic Intergenic 193280 ENSMUSG00000109457.1 ENSMUSG00000109457 ENSMUST00000208756 Gm44909 processed_pseudogene Interval_3141 chr1 53935858 53936272 + 0 NA intron (ENSMUSG00000042807.15, intron 5 of 28) protein_coding-intron (ENSMUSG00000042807.15, intron 5 of 28) -49124 ENSMUSG00000087949.1 ENSMUSG00000087949 ENSMUST00000157324 Gm24251 snRNA Interval_59344 chr15 51795558 51796073 + 0 NA intron (ENSMUSG00000022312.11, intron 3 of 4) protein_coding-intron (ENSMUSG00000022312.11, intron 5 of 7) 40442 ENSMUSG00000022312.11 ENSMUSG00000022312 ENSMUST00000228583 Eif3h protein_coding Interval_121495 chr4 156184473 156184906 + 0 NA intron (ENSMUSG00000041936.18, intron 2 of 35) protein_coding-intron (ENSMUSG00000041936.18, intron 2 of 21) 1418 ENSMUSG00000041936.18 ENSMUSG00000041936 ENSMUST00000144749 Agrn protein_coding Interval_86177 chr19 37566669 37567628 + 0 NA intron (ENSMUSG00000053799.8, intron 1 of 21) protein_coding-intron (ENSMUSG00000053799.8, intron 1 of 21) 46269 ENSMUSG00000053799.8 ENSMUSG00000053799 ENSMUST00000238817 Exoc6 protein_coding Interval_105736 chr3 89058595 89059205 + 0 NA intron (ENSMUSG00000028053.13, intron 17 of 27) protein_coding-intron (ENSMUSG00000028053.13, intron 16 of 26) -9773 ENSMUSG00000077804.1 ENSMUSG00000077804 ENSMUST00000104616 Gm24403 snoRNA Interval_153767 chr8 8072392 8073240 + 0 NA intron (ENSMUSG00000109566.1, intron 1 of 3) lincRNA-intron (ENSMUSG00000109566.1, intron 1 of 3) 6150 ENSMUSG00000109566.1 ENSMUSG00000109566 ENSMUST00000207352 Gm31401 lincRNA Interval_141400 chr6 128023593 128024017 + 0 NA intron (ENSMUSG00000030352.15, intron 2 of 2) protein_coding-intron (ENSMUSG00000030352.15, intron 3 of 8) 11200 ENSMUSG00000030352.15 ENSMUSG00000030352 ENSMUST00000127075 Tspan9 protein_coding Interval_147724 chr7 73032130 73033136 + 0 NA Intergenic Intergenic -42480 ENSMUSG00000098035.1 ENSMUSG00000098035 ENSMUST00000182995 Gm5335 processed_pseudogene Interval_2230 chr1 37240862 37241869 + 0 NA intron (ENSMUSG00000026114.14, intron 2 of 5) protein_coding-intron (ENSMUSG00000026114.14, intron 2 of 5) 22986 ENSMUSG00000026114.14 ENSMUSG00000026114 ENSMUST00000027288 Cnga3 protein_coding Interval_89462 chr2 20801388 20801629 + 0 NA intron (ENSMUSG00000036617.17, intron 1 of 2) protein_coding-intron (ENSMUSG00000036617.17, intron 16 of 18) 58288 ENSMUSG00000036591.16 ENSMUSG00000036591 ENSMUST00000173654 Arhgap21 protein_coding Interval_79084 chr18 24418291 24418999 + 0 NA Intergenic Intergenic 10525 ENSMUSG00000065532.1 ENSMUSG00000065532 ENSMUST00000083598 Mir187 miRNA Interval_107279 chr3 105330957 105331366 + 0 NA Intergenic Intergenic 120566 ENSMUSG00000074346.6 ENSMUSG00000074346 ENSMUST00000130683 Kcnd3os antisense Interval_161516 chr8 120882751 120884103 + 0 NA TTS (ENSMUSG00000097087.1) lincRNA-TTS (ENSMUSG00000097087.1) 3221 ENSMUSG00000097087.1 ENSMUSG00000097087 ENSMUST00000181778 Gm26878 lincRNA Interval_69247 chr16 91655632 91657098 + 0 NA exon (ENSMUSG00000022961.18, exon 3 of 5) protein_coding-exon (ENSMUSG00000022961.18, exon 3 of 5) -15898 ENSMUSG00000022961.18 ENSMUSG00000022961 ENSMUST00000151503 Son protein_coding Interval_116801 chr4 117352433 117353692 + 0 NA intron (ENSMUSG00000028677.19, intron 2 of 2) protein_coding-intron (ENSMUSG00000028677.19, intron 2 of 14) 56918 ENSMUSG00000085749.1 ENSMUSG00000085749 ENSMUST00000139618 Gm12843 antisense Interval_75592 chr17 69109178 69109685 + 0 NA intron (ENSMUSG00000024044.19, intron 1 of 3) protein_coding-intron (ENSMUSG00000024044.19, intron 1 of 3) -17569 ENSMUSG00000024044.19 ENSMUSG00000024044 ENSMUST00000223565 Epb41l3 protein_coding Interval_113162 chr4 48771312 48771865 + 0 NA Intergenic Intergenic -8626 ENSMUSG00000093240.1 ENSMUSG00000093240 ENSMUST00000175499 Gm24573 rRNA Interval_63556 chr15 102025371 102026011 + 0 NA Intergenic Intergenic -2489 ENSMUSG00000023043.7 ENSMUSG00000023043 ENSMUST00000023803 Krt18 protein_coding Interval_25803 chr11 51817732 51818436 + 0 NA intron (ENSMUSG00000020387.15, intron 12 of 12) protein_coding-intron (ENSMUSG00000020387.15, intron 11 of 11) 39041 ENSMUSG00000020387.15 ENSMUSG00000020387 ENSMUST00000151277 Jade2 protein_coding Interval_138147 chr6 85477311 85478701 + 0 NA exon (ENSMUSG00000047013.15, exon 8 of 13) protein_coding-exon (ENSMUSG00000047013.15, exon 8 of 13) 16235 ENSMUSG00000030007.8 ENSMUSG00000030007 ENSMUST00000204612 Cct7 protein_coding Interval_172208 chrX 9255774 9256277 + 0 NA intron (ENSMUSG00000079694.2, intron 1 of 2) protein_coding-intron (ENSMUSG00000047344.9, intron 3 of 4) 874 ENSMUSG00000079694.2 ENSMUSG00000079694 ENSMUST00000115553 Gm14862 protein_coding Interval_64324 chr16 10516247 10516668 + 0 NA intron (ENSMUSG00000038055.12, intron 3 of 4) protein_coding-intron (ENSMUSG00000022504.10, intron 12 of 18) 26597 ENSMUSG00000038055.12 ENSMUSG00000038055 ENSMUST00000038281 Dexi protein_coding Interval_73581 chr17 40754715 40754995 + 0 NA Intergenic Intergenic 27735 ENSMUSG00000073396.5 ENSMUSG00000073396 ENSMUST00000161110 Esp1 protein_coding Interval_93781 chr2 76823657 76824064 + 0 NA intron (ENSMUSG00000051747.15, intron 6 of 8) protein_coding-intron (ENSMUSG00000051747.15, intron 46 of 190) 12954 ENSMUSG00000051747.15 ENSMUSG00000051747 ENSMUST00000147048 Ttn protein_coding Interval_70890 chr17 15677911 15678412 + 0 NA Intergenic Intergenic 46373 ENSMUSG00000116924.1 ENSMUSG00000116924 ENSMUST00000231822 4933401D09Rik lincRNA Interval_22827 chr11 16403012 16404083 + 0 NA intron (ENSMUSG00000048834.16, intron 5 of 6) protein_coding-intron (ENSMUSG00000048834.16, intron 5 of 6) -35707 ENSMUSG00000083925.1 ENSMUSG00000083925 ENSMUST00000118857 Gm12012 processed_pseudogene Interval_128462 chr5 113449194 113449744 + 0 NA Intergenic Intergenic 92175 ENSMUSG00000053873.1 ENSMUSG00000053873 ENSMUST00000066573 Aym1 protein_coding Interval_41487 chr12 114996955 114997311 + 0 NA Intergenic Intergenic -5553 ENSMUSG00000076709.2 ENSMUSG00000076709 ENSMUST00000194865 Ighv1-47 IG_V_gene Interval_90971 chr2 33826942 33827472 + 0 NA intron (ENSMUSG00000038740.9, intron 5 of 7) protein_coding-intron (ENSMUSG00000038740.9, intron 5 of 9) 14250 ENSMUSG00000089596.1 ENSMUSG00000089596 ENSMUST00000158971 Nron misc_RNA Interval_43538 chr13 32897110 32897361 + 0 NA intron (ENSMUSG00000079049.9, intron 1 of 6) protein_coding-intron (ENSMUSG00000079049.9, intron 1 of 6) 922 ENSMUSG00000079049.9 ENSMUSG00000079049 ENSMUST00000221019 Serpinb1c protein_coding Interval_138580 chr6 89553173 89553959 + 0 NA intron (ENSMUSG00000030086.16, intron 4 of 5) protein_coding-intron (ENSMUSG00000030086.16, intron 4 of 7) -26111 ENSMUSG00000107680.1 ENSMUSG00000107680 ENSMUST00000205126 Gm43903 TEC Interval_158364 chr8 82955480 82955728 + 0 NA intron (ENSMUSG00000047747.10, intron 1 of 1) protein_coding-intron (ENSMUSG00000047747.10, intron 1 of 6) 3092 ENSMUSG00000109600.1 ENSMUSG00000109600 ENSMUST00000211678 Gm18212 processed_pseudogene Interval_144399 chr7 24917920 24918162 + 0 NA exon (ENSMUSG00000040940.18, exon 7 of 7) protein_coding-exon (ENSMUSG00000040940.18, exon 7 of 7) 13685 ENSMUSG00000040940.18 ENSMUSG00000040940 ENSMUST00000132786 Arhgef1 protein_coding Interval_146215 chr7 44736892 44737212 + 0 NA exon (ENSMUSG00000048012.19, exon 3 of 3) protein_coding-exon (ENSMUSG00000048012.19, exon 3 of 3) 7178 ENSMUSG00000048012.19 ENSMUSG00000048012 ENSMUST00000126366 Zfp473 protein_coding Interval_85584 chr19 28834281 28836154 + 0 NA promoter-TSS (ENSMUSG00000024935.11) protein_coding-promoter-TSS (ENSMUSG00000024935.11) 82 ENSMUSG00000024935.11 ENSMUSG00000024935 ENSMUST00000162189 Slc1a1 protein_coding Interval_3834 chr1 63403454 63404199 + 0 NA Intergenic Intergenic -38461 ENSMUSG00000081643.1 ENSMUSG00000081643 ENSMUST00000120413 Gm11605 processed_pseudogene Interval_152712 chr7 136760280 136760715 + 0 NA Intergenic Intergenic -49893 ENSMUSG00000110101.1 ENSMUSG00000110101 ENSMUST00000211142 Gm6249 lincRNA Interval_132553 chr5 146281505 146281930 + 0 NA intron (ENSMUSG00000029635.15, intron 4 of 11) protein_coding-intron (ENSMUSG00000029635.15, intron 4 of 12) -4459 ENSMUSG00000029635.15 ENSMUSG00000029635 ENSMUST00000160924 Cdk8 protein_coding Interval_115547 chr4 100632961 100633145 + 0 NA Intergenic Intergenic 51775 ENSMUSG00000082601.1 ENSMUSG00000082601 ENSMUST00000118145 Gm12700 processed_pseudogene Interval_134707 chr6 30546668 30547498 + 0 NA TTS (ENSMUSG00000071553.10) protein_coding-TTS (ENSMUSG00000071553.10) 2598 ENSMUSG00000071553.10 ENSMUSG00000071553 ENSMUST00000144282 Cpa2 protein_coding Interval_9057 chr1 153326905 153327367 + 0 NA intron (ENSMUSG00000026478.14, intron 1 of 27) protein_coding-intron (ENSMUSG00000026478.14, intron 1 of 27) 21704 ENSMUSG00000079138.3 ENSMUSG00000079138 ENSMUST00000110797 Gm8818 processed_pseudogene Interval_30448 chr11 94423663 94425854 + 0 NA promoter-TSS (ENSMUSG00000020866.17) protein_coding-promoter-TSS (ENSMUSG00000020866.17) -31782 ENSMUSG00000020865.16 ENSMUSG00000020865 ENSMUST00000126566 Abcc3 protein_coding Interval_137255 chr6 70791049 70792748 + 0 NA exon (ENSMUSG00000053604.5, exon 1 of 9) protein_coding-exon (ENSMUSG00000053604.5, exon 1 of 9) 105 ENSMUSG00000053604.5 ENSMUSG00000053604 ENSMUST00000129244 Rpia protein_coding Interval_117103 chr4 119546407 119547469 + 0 NA intron (ENSMUSG00000032998.16, intron 2 of 6) protein_coding-intron (ENSMUSG00000032998.16, intron 1 of 12) 7120 ENSMUSG00000081678.1 ENSMUSG00000081678 ENSMUST00000119396 Gm12959 processed_pseudogene Interval_117200 chr4 120533226 120533466 + 0 NA exon (ENSMUSG00000047518.3, exon 2 of 5) protein_coding-exon (ENSMUSG00000047518.3, exon 2 of 5) 1115 ENSMUSG00000047518.3 ENSMUSG00000047518 ENSMUST00000062990 Slfnl1 protein_coding Interval_19066 chr10 94161137 94162136 + 0 NA intron (ENSMUSG00000005897.14, intron 2 of 13) protein_coding-intron (ENSMUSG00000005897.14, intron 3 of 14) 13613 ENSMUSG00000005897.14 ENSMUSG00000005897 ENSMUST00000099343 Nr2c1 protein_coding Interval_129266 chr5 118533458 118533645 + 0 NA Intergenic Intergenic 29550 ENSMUSG00000106912.1 ENSMUSG00000106912 ENSMUST00000201036 Gm43785 TEC Interval_65027 chr16 18563020 18563865 + 0 NA intron (ENSMUSG00000000884.17, intron 7 of 7) protein_coding-intron (ENSMUSG00000000884.17, intron 7 of 7) 25366 ENSMUSG00000009097.10 ENSMUSG00000009097 ENSMUST00000232589 Tbx1 protein_coding Interval_145430 chr7 34713868 34714128 + 0 NA intron (ENSMUSG00000060402.8, intron 2 of 2) protein_coding-intron (ENSMUSG00000060402.8, intron 2 of 3) 39814 ENSMUSG00000060402.8 ENSMUSG00000060402 ENSMUST00000205390 Chst8 protein_coding Interval_118770 chr4 133619836 133620678 + 0 NA intron (ENSMUSG00000037553.14, intron 2 of 7) protein_coding-intron (ENSMUSG00000037553.14, intron 2 of 7) -18089 ENSMUSG00000047281.3 ENSMUSG00000047281 ENSMUST00000057311 Sfn protein_coding Interval_150367 chr7 109954792 109955416 + 0 NA intron (ENSMUSG00000035901.14, intron 1 of 3) protein_coding-intron (ENSMUSG00000035901.14, intron 1 of 22) 31183 ENSMUSG00000047554.14 ENSMUSG00000047554 ENSMUST00000207300 Tmem41b protein_coding Interval_153984 chr8 11634804 11636816 + 0 NA promoter-TSS (ENSMUSG00000031508.14) protein_coding-promoter-TSS (ENSMUSG00000031508.14) -74 ENSMUSG00000104958.1 ENSMUSG00000104958 ENSMUST00000198377 Mir7238 miRNA Interval_54160 chr14 65817100 65817645 + 0 NA exon (ENSMUSG00000022033.9, exon 8 of 8) protein_coding-exon (ENSMUSG00000022033.9, exon 8 of 8) 11435 ENSMUSG00000022033.9 ENSMUSG00000022033 ENSMUST00000139644 Pbk protein_coding Interval_130144 chr5 124510840 124511120 + 0 NA intron (ENSMUSG00000029392.12, intron 1 of 4) protein_coding-intron (ENSMUSG00000029392.12, intron 4 of 6) -7009 ENSMUSG00000029392.12 ENSMUSG00000029392 ENSMUST00000199125 Rilpl1 protein_coding Interval_60087 chr15 65052277 65052464 + 0 NA Intergenic Intergenic 10796 ENSMUSG00000115677.1 ENSMUSG00000115677 ENSMUST00000228465 Gm49241 processed_pseudogene Interval_116137 chr4 108030927 108032672 + 0 NA promoter-TSS (ENSMUSG00000028600.15) protein_coding-promoter-TSS (ENSMUSG00000028600.15) -813 ENSMUSG00000028600.15 ENSMUSG00000028600 ENSMUST00000124265 Podn protein_coding Interval_172264 chrX 12089724 12092047 + 0 NA intron (ENSMUSG00000040363.15, intron 1 of 13) protein_coding-intron (ENSMUSG00000040363.15, intron 1 of 13) 69461 ENSMUSG00000040363.15 ENSMUSG00000040363 ENSMUST00000209776 Bcor protein_coding Interval_140916 chr6 122734663 122735391 + 0 NA intron (ENSMUSG00000003153.10, intron 5 of 8) protein_coding-intron (ENSMUSG00000003153.10, intron 6 of 9) 27538 ENSMUSG00000012396.12 ENSMUSG00000012396 ENSMUST00000012540 Nanog protein_coding Interval_1596 chr1 28784283 28784542 + 0 NA Intergenic Intergenic -4160 ENSMUSG00000048411.4 ENSMUSG00000048411 ENSMUST00000059937 Gm597 protein_coding Interval_72126 chr17 28179886 28180585 + 0 NA exon (ENSMUSG00000024220.14, exon 1 of 1) protein_coding-exon (ENSMUSG00000024220.14, exon 1 of 1) -2553 ENSMUSG00000117171.1 ENSMUSG00000117171 ENSMUST00000233181 C230013L11Rik bidirectional_promoter_lncRNA Interval_43318 chr13 29072542 29073824 + 0 NA Intergenic Intergenic 57575 ENSMUSG00000082730.2 ENSMUSG00000082730 ENSMUST00000121672 Gm11363 processed_pseudogene Interval_132209 chr5 143359678 143360273 + 0 NA intron (ENSMUSG00000010825.17, intron 1 of 21) protein_coding-intron (ENSMUSG00000010825.17, intron 1 of 21) -12999 ENSMUSG00000010825.17 ENSMUSG00000010825 ENSMUST00000138948 Grid2ip protein_coding Interval_119447 chr4 137681242 137682205 + 0 NA promoter-TSS (ENSMUSG00000041351.16) protein_coding-promoter-TSS (ENSMUSG00000041351.16) 16969 ENSMUSG00000041351.16 ENSMUSG00000041351 ENSMUST00000144059 Rap1gap protein_coding Interval_158321 chr8 81187051 81188054 + 0 NA Intergenic Intergenic 10796 ENSMUSG00000094615.2 ENSMUSG00000094615 ENSMUST00000178708 Gm4899 processed_pseudogene Interval_82626 chr18 75506158 75506595 + 0 NA intron (ENSMUSG00000052928.9, intron 9 of 11) protein_coding-intron (ENSMUSG00000052928.9, intron 9 of 11) -8269 ENSMUSG00000097712.1 ENSMUSG00000097712 ENSMUST00000181913 Gm10532 antisense Interval_45411 chr13 54969601 54971301 + 0 NA intron (ENSMUSG00000025876.15, intron 1 of 14) protein_coding-intron (ENSMUSG00000025876.15, intron 1 of 15) -32559 ENSMUSG00000025876.15 ENSMUSG00000025876 ENSMUST00000137967 Unc5a protein_coding Interval_148662 chr7 83948550 83948970 + 0 NA exon (ENSMUSG00000052353.13, exon 23 of 29) protein_coding-exon (ENSMUSG00000052353.13, exon 23 of 29) 53707 ENSMUSG00000038503.15 ENSMUSG00000038503 ENSMUST00000207373 Mesd protein_coding Interval_44487 chr13 45319593 45321045 + 0 NA intron (ENSMUSG00000113772.1, intron 3 of 4) lincRNA-intron (ENSMUSG00000113772.1, intron 3 of 4) -25323 ENSMUSG00000088203.1 ENSMUSG00000088203 ENSMUST00000157578 Gm23755 misc_RNA Interval_55817 chr14 100485326 100485601 + 0 NA Intergenic Intergenic 26040 ENSMUSG00000115821.1 ENSMUSG00000115821 ENSMUST00000227740 6330576A10Rik lincRNA Interval_31565 chr11 101405711 101406159 + 0 NA TTS (ENSMUSG00000075528.13) protein_coding-TTS (ENSMUSG00000075528.13) -8167 ENSMUSG00000064759.1 ENSMUSG00000064759 ENSMUST00000082825 Gm25475 snRNA Interval_118094 chr4 128924890 128925595 + 0 NA Intergenic Intergenic -10763 ENSMUSG00000085961.1 ENSMUSG00000085961 ENSMUST00000154515 Gm15904 antisense Interval_12124 chr1 189887446 189887763 + 0 NA intron (ENSMUSG00000026603.13, intron 8 of 9) protein_coding-intron (ENSMUSG00000026603.13, intron 7 of 11) 7669 ENSMUSG00000104435.1 ENSMUSG00000104435 ENSMUST00000193794 Gm37422 antisense Interval_78458 chr18 12988599 12988949 + 0 NA promoter-TSS (ENSMUSG00000024423.6) protein_coding-promoter-TSS (ENSMUSG00000024423.6) -18263 ENSMUSG00000037346.5 ENSMUSG00000037346 ENSMUST00000234565 Hrh4 protein_coding Interval_89034 chr2 14835328 14835543 + 0 NA intron (ENSMUSG00000057914.15, intron 1 of 7) protein_coding-intron (ENSMUSG00000057914.15, intron 2 of 13) -22897 ENSMUSG00000085281.3 ENSMUSG00000085281 ENSMUST00000140537 Gm13316 processed_pseudogene Interval_79455 chr18 32042539 32043285 + 0 NA Intergenic Intergenic 11823 ENSMUSG00000085300.1 ENSMUSG00000085300 ENSMUST00000146065 Gm16345 processed_pseudogene Interval_150642 chr7 113039316 113039591 + 0 NA Intergenic Intergenic 55550 ENSMUSG00000110207.1 ENSMUSG00000110207 ENSMUST00000210768 Gm33586 lincRNA Interval_96600 chr2 126279433 126279935 + 0 NA Intergenic Intergenic -10321 ENSMUSG00000089480.1 ENSMUSG00000089480 ENSMUST00000158855 Gm24739 misc_RNA Interval_104196 chr3 60387559 60387895 + 0 NA Intergenic Intergenic -44634 ENSMUSG00000107270.1 ENSMUSG00000107270 ENSMUST00000201864 Tgif1-ps processed_pseudogene Interval_108770 chr3 131171724 131172038 + 0 NA intron (ENSMUSG00000027985.14, intron 3 of 8) protein_coding-intron (ENSMUSG00000027985.14, intron 3 of 11) 35096 ENSMUSG00000104612.1 ENSMUSG00000104612 ENSMUST00000200349 Gm42449 TEC Interval_5673 chr1 90830173 90830470 + 0 NA intron (ENSMUSG00000048126.16, intron 1 of 40) protein_coding-intron (ENSMUSG00000048126.16, intron 1 of 43) 8812 ENSMUSG00000103061.1 ENSMUSG00000103061 ENSMUST00000193688 Gm36970 TEC Interval_40387 chr12 104568246 104568624 + 0 NA Intergenic Intergenic 48467 ENSMUSG00000112954.1 ENSMUSG00000112954 ENSMUST00000222329 Gm49732 lincRNA Interval_161949 chr8 123993507 123994713 + 0 NA intron (ENSMUSG00000092329.1, intron 1 of 15) protein_coding-intron (ENSMUSG00000092329.1, intron 1 of 15) -10988 ENSMUSG00000031974.8 ENSMUSG00000031974 ENSMUST00000075578 Abcb10 protein_coding Interval_174087 chrX 134588552 134589356 + 0 NA TTS (ENSMUSG00000079435.9) protein_coding-TTS (ENSMUSG00000079435.9) 3265 ENSMUSG00000079435.9 ENSMUSG00000079435 ENSMUST00000152266 Rpl36a protein_coding Interval_20193 chr10 115578302 115578507 + 0 NA intron (ENSMUSG00000092210.1, intron 2 of 4) protein_coding-intron (ENSMUSG00000020140.15, intron 1 of 17) 8418 ENSMUSG00000092210.1 ENSMUSG00000092210 ENSMUST00000173620 A930009A15Rik protein_coding Interval_35957 chr12 32838481 32839020 + 0 NA intron (ENSMUSG00000020572.8, intron 5 of 5) protein_coding-intron (ENSMUSG00000020572.8, intron 5 of 10) 19205 ENSMUSG00000020572.8 ENSMUSG00000020572 ENSMUST00000218491 Nampt protein_coding Interval_173839 chrX 105902270 105902946 + 0 NA intron (ENSMUSG00000031229.16, intron 1 of 6) protein_coding-intron (ENSMUSG00000031229.16, intron 1 of 5) -27303 ENSMUSG00000031229.16 ENSMUSG00000031229 ENSMUST00000126345 Atrx protein_coding Interval_65096 chr16 19064876 19065345 + 0 NA TTS (ENSMUSG00000105547.1) IG_C_gene-TTS (ENSMUSG00000105547.1) 571 ENSMUSG00000105547.1 ENSMUSG00000105547 ENSMUST00000200235 Iglc3 IG_C_gene Interval_151482 chr7 122998493 122998779 + 0 NA exon (ENSMUSG00000030779.16, exon 17 of 18) protein_coding-exon (ENSMUSG00000030779.16, exon 17 of 18) 3288 ENSMUSG00000108551.1 ENSMUSG00000108551 ENSMUST00000206967 Gm20274 sense_intronic Interval_59185 chr15 47180395 47181226 + 0 NA Intergenic Intergenic -236362 ENSMUSG00000088679.1 ENSMUSG00000088679 ENSMUST00000158054 Gm23665 snRNA Interval_127385 chr5 103644345 103644587 + 0 NA Intergenic Intergenic 9241 ENSMUSG00000105018.1 ENSMUSG00000105018 ENSMUST00000196721 Gm43546 TEC Interval_112496 chr4 41614268 41614577 + 0 NA intron (ENSMUSG00000061322.15, intron 11 of 19) protein_coding-intron (ENSMUSG00000061322.15, intron 11 of 19) -17222 ENSMUSG00000061322.15 ENSMUSG00000061322 ENSMUST00000119127 Dnaic1 protein_coding Interval_761 chr1 10775149 10775385 + 0 NA Intergenic Intergenic 9110 ENSMUSG00000103448.1 ENSMUSG00000103448 ENSMUST00000192705 Gm37133 TEC Interval_61619 chr15 83002826 83003059 + 0 NA intron (ENSMUSG00000058099.16, intron 4 of 5) protein_coding-intron (ENSMUSG00000058099.16, intron 4 of 5) -15112 ENSMUSG00000100552.1 ENSMUSG00000100552 ENSMUST00000186748 Gm29019 lincRNA Interval_163355 chr9 21033166 21033683 + 0 NA TTS (ENSMUSG00000097535.1) antisense-TTS (ENSMUSG00000097535.1) -1067 ENSMUSG00000110790.1 ENSMUSG00000110790 ENSMUST00000216917 Gm47079 antisense Interval_17371 chr10 76146739 76147352 + 0 NA promoter-TSS (ENSMUSG00000020229.4) protein_coding-promoter-TSS (ENSMUSG00000020229.4) -406 ENSMUSG00000020229.4 ENSMUSG00000020229 ENSMUST00000020450 Slc5a4a protein_coding Interval_154888 chr8 24725381 24725897 + 0 NA intron (ENSMUSG00000031553.16, intron 1 of 10) protein_coding-intron (ENSMUSG00000031553.16, intron 1 of 21) 149 ENSMUSG00000031553.16 ENSMUSG00000031553 ENSMUST00000169598 Adam3 protein_coding Interval_158885 chr8 87696147 87696379 + 0 NA intron (ENSMUSG00000045333.15, intron 3 of 5) protein_coding-intron (ENSMUSG00000045333.15, intron 4 of 6) 59606 ENSMUSG00000089301.1 ENSMUSG00000089301 ENSMUST00000158676 Gm24841 misc_RNA Interval_18302 chr10 84721700 84722873 + 0 NA intron (ENSMUSG00000034453.8, intron 27 of 27) protein_coding-intron (ENSMUSG00000034453.8, intron 27 of 27) -39952 ENSMUSG00000020037.15 ENSMUSG00000020037 ENSMUST00000095388 Rfx4 protein_coding Interval_79026 chr18 24039645 24039944 + 0 NA Intergenic Intergenic -19474 ENSMUSG00000051469.14 ENSMUSG00000051469 ENSMUST00000148525 Zfp24 protein_coding Interval_126159 chr5 80477040 80478236 + 0 NA Intergenic Intergenic 378730 ENSMUSG00000095594.1 ENSMUSG00000095594 ENSMUST00000177635 Gm24304 snRNA Interval_120787 chr4 150651700 150652151 + 0 NA intron (ENSMUSG00000039838.11, intron 1 of 7) protein_coding-intron (ENSMUSG00000039838.11, intron 1 of 8) -7836 ENSMUSG00000039838.11 ENSMUSG00000039838 ENSMUST00000147706 Slc45a1 protein_coding Interval_31673 chr11 102184515 102185501 + 0 NA intron (ENSMUSG00000020922.11, intron 1 of 3) protein_coding-intron (ENSMUSG00000020922.11, intron 1 of 4) 253 ENSMUSG00000020922.11 ENSMUSG00000020922 ENSMUST00000153276 Lsm12 protein_coding Interval_26804 chr11 60714261 60714580 + 0 NA TTS (ENSMUSG00000020536.12) protein_coding-TTS (ENSMUSG00000020536.12) 5721 ENSMUSG00000002812.4 ENSMUSG00000002812 ENSMUST00000137226 Flii protein_coding Interval_40577 chr12 105814188 105814807 + 0 NA TTS (ENSMUSG00000021111.15) protein_coding-TTS (ENSMUSG00000021111.15) -14570 ENSMUSG00000021111.15 ENSMUSG00000021111 ENSMUST00000172089 Papola protein_coding Interval_15737 chr10 55461973 55462210 + 0 NA Intergenic Intergenic 337729 ENSMUSG00000112755.1 ENSMUSG00000112755 ENSMUST00000219650 Gm46190 processed_pseudogene Interval_68571 chr16 78948758 78949104 + 0 NA intron (ENSMUSG00000022860.15, intron 5 of 5) protein_coding-intron (ENSMUSG00000022860.15, intron 5 of 5) -15165 ENSMUSG00000085094.2 ENSMUSG00000085094 ENSMUST00000152173 Gm15692 processed_pseudogene Interval_145370 chr7 34272491 34273014 + 0 NA intron (ENSMUSG00000066571.13, intron 2 of 13) protein_coding-intron (ENSMUSG00000066571.13, intron 1 of 12) -21397 ENSMUSG00000108737.1 ENSMUSG00000108737 ENSMUST00000207005 BC060293 TEC Interval_111294 chr4 17482238 17482783 + 0 NA Intergenic Intergenic 77509 ENSMUSG00000089218.1 ENSMUSG00000089218 ENSMUST00000158593 Gm23384 snRNA Interval_163883 chr9 27556227 27557479 + 0 NA Intergenic Intergenic 3373 ENSMUSG00000111694.1 ENSMUSG00000111694 ENSMUST00000214666 Gm48901 lincRNA Interval_96518 chr2 125246877 125248193 + 0 NA promoter-TSS (ENSMUSG00000027203.15) protein_coding-promoter-TSS (ENSMUSG00000027203.15) -365 ENSMUSG00000027203.15 ENSMUSG00000027203 ENSMUST00000133211 Dut protein_coding Interval_140449 chr6 118205294 118205504 + 0 NA Intergenic Intergenic -7681 ENSMUSG00000030110.13 ENSMUSG00000030110 ENSMUST00000088790 Ret protein_coding Interval_53047 chr14 53876315 53876816 + 0 NA exon (ENSMUSG00000076863.8, exon 2 of 2) TR_V_gene-exon (ENSMUSG00000076863.8, exon 2 of 2) 581 ENSMUSG00000076863.8 ENSMUSG00000076863 ENSMUST00000180938 Trav21-dv12 TR_V_gene Interval_72247 chr17 28793005 28793680 + 0 NA Intergenic Intergenic -8015 ENSMUSG00000063952.16 ENSMUSG00000063952 ENSMUST00000127007 Brpf3 protein_coding Interval_80704 chr18 46494300 46494971 + 0 NA Intergenic Intergenic -2450 ENSMUSG00000118116.1 ENSMUSG00000118116 ENSMUST00000235462 Gm3720 processed_pseudogene Interval_172016 chr9 123519935 123520177 + 0 NA TTS (ENSMUSG00000025239.3) protein_coding-TTS (ENSMUSG00000025239.3) -9703 ENSMUSG00000025240.10 ENSMUSG00000025240 ENSMUST00000215004 Sacm1l protein_coding Interval_99101 chr2 157196720 157198901 + 0 NA intron (ENSMUSG00000027641.13, intron 2 of 15) protein_coding-intron (ENSMUSG00000027641.13, intron 2 of 21) 6724 ENSMUSG00000027641.13 ENSMUSG00000027641 ENSMUST00000141296 Rbl1 protein_coding Interval_146826 chr7 52595157 52595695 + 0 NA Intergenic Intergenic -160039 ENSMUSG00000074092.5 ENSMUSG00000074092 ENSMUST00000117187 Gm6181 processed_pseudogene Interval_135043 chr6 34919343 34922690 + 0 NA promoter-TSS (ENSMUSG00000029848.11) protein_coding-promoter-TSS (ENSMUSG00000029848.11) 12 ENSMUSG00000029848.11 ENSMUSG00000029848 ENSMUST00000114997 Stra8 protein_coding Interval_105513 chr3 87165189 87165734 + 0 NA intron (ENSMUSG00000041734.15, intron 1 of 15) protein_coding-intron (ENSMUSG00000041734.15, intron 1 of 13) 7768 ENSMUSG00000102893.1 ENSMUSG00000102893 ENSMUST00000192571 Gm37855 lincRNA Interval_73697 chr17 42857365 42858193 + 0 NA intron (ENSMUSG00000061665.7, intron 1 of 17) protein_coding-intron (ENSMUSG00000061665.7, intron 1 of 17) -26749 ENSMUSG00000061665.7 ENSMUSG00000061665 ENSMUST00000233626 Cd2ap protein_coding Interval_132615 chr5 146757254 146758552 + 0 NA intron (ENSMUSG00000029640.17, intron 3 of 8) protein_coding-intron (ENSMUSG00000029640.17, intron 3 of 8) 545 ENSMUSG00000029640.17 ENSMUSG00000029640 ENSMUST00000124009 Usp12 protein_coding Interval_119631 chr4 138859403 138860442 + 0 NA intron (ENSMUSG00000041193.15, intron 1 of 1) protein_coding-intron (ENSMUSG00000041193.15, intron 1 of 5) 14042 ENSMUSG00000078518.1 ENSMUSG00000078518 ENSMUST00000105805 Gm13030 protein_coding Interval_24029 chr11 29635416 29638073 + 0 NA intron (ENSMUSG00000084850.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000084850.1, intron 1 of 2) 8765 ENSMUSG00000084850.1 ENSMUSG00000084850 ENSMUST00000125194 Gm12092 lincRNA Interval_138959 chr6 93833773 93834486 + 0 NA intron (ENSMUSG00000045095.16, intron 2 of 24) protein_coding-intron (ENSMUSG00000045095.16, intron 2 of 21) 40357 ENSMUSG00000088627.1 ENSMUSG00000088627 ENSMUST00000158002 Gm23035 snRNA Interval_17836 chr10 80320190 80320932 + 0 NA promoter-TSS (ENSMUSG00000020133.8) protein_coding-promoter-TSS (ENSMUSG00000020133.8) -24 ENSMUSG00000020133.8 ENSMUSG00000020133 ENSMUST00000020341 2310011J03Rik protein_coding Interval_18296 chr10 84668996 84669244 + 0 NA intron (ENSMUSG00000034453.8, intron 13 of 27) protein_coding-intron (ENSMUSG00000034453.8, intron 13 of 27) 30986 ENSMUSG00000034453.8 ENSMUSG00000034453 ENSMUST00000213543 Polr3b protein_coding Interval_98115 chr2 148213096 148213650 + 0 NA Intergenic Intergenic 62223 ENSMUSG00000089458.1 ENSMUSG00000089458 ENSMUST00000158833 Gm24221 snoRNA Interval_157987 chr8 77578717 77579030 + 0 NA intron (ENSMUSG00000037134.17, intron 10 of 11) protein_coding-intron (ENSMUSG00000037134.17, intron 10 of 11) 4654 ENSMUSG00000109787.1 ENSMUSG00000109787 ENSMUST00000209267 Gm45286 TEC Interval_20209 chr10 115909719 115910701 + 0 NA Intergenic Intergenic -40688 ENSMUSG00000112513.1 ENSMUSG00000112513 ENSMUST00000220081 4930422I22Rik antisense Interval_158861 chr8 87472021 87473570 + 0 NA promoter-TSS (ENSMUSG00000031654.16) protein_coding-promoter-TSS (ENSMUSG00000031654.16) -339 ENSMUSG00000097248.9 ENSMUSG00000097248 ENSMUST00000210170 Gm2694 lincRNA Interval_132779 chr5 147824026 147824468 + 0 NA Intergenic Intergenic 2002 ENSMUSG00000107065.1 ENSMUSG00000107065 ENSMUST00000202661 Gm43155 processed_pseudogene Interval_5052 chr1 84695207 84697501 + 0 NA promoter-TSS (ENSMUSG00000036766.12) protein_coding-promoter-TSS (ENSMUSG00000036766.12) 515 ENSMUSG00000093254.1 ENSMUSG00000093254 ENSMUST00000175513 Mir5126 miRNA Interval_150287 chr7 109338848 109339067 + 0 NA intron (ENSMUSG00000031027.15, intron 1 of 10) protein_coding-intron (ENSMUSG00000031027.15, intron 3 of 12) 49918 ENSMUSG00000081370.1 ENSMUSG00000081370 ENSMUST00000120160 Gm9105 processed_pseudogene Interval_98506 chr2 152847548 152848690 + 0 NA promoter-TSS (ENSMUSG00000027469.16) protein_coding-promoter-TSS (ENSMUSG00000027469.16) 155 ENSMUSG00000027469.16 ENSMUSG00000027469 ENSMUST00000143740 Tpx2 protein_coding Interval_110955 chr4 10835562 10836157 + 0 NA Intergenic Intergenic 9771 ENSMUSG00000092880.1 ENSMUSG00000092880 ENSMUST00000175139 Mir3471-1 miRNA Interval_91627 chr2 44970163 44971663 + 0 NA Intergenic Intergenic 52264 ENSMUSG00000092679.1 ENSMUSG00000092679 ENSMUST00000174938 Mir5129 miRNA Interval_86973 chr19 45271731 45273416 + 0 NA Intergenic Intergenic 31610 ENSMUSG00000100417.2 ENSMUSG00000100417 ENSMUST00000235311 Gm28578 lincRNA Interval_76510 chr17 80673407 80674248 + 0 NA intron (ENSMUSG00000024242.15, intron 3 of 6) protein_coding-intron (ENSMUSG00000024242.15, intron 2 of 33) -48841 ENSMUSG00000024242.15 ENSMUSG00000024242 ENSMUST00000234486 Map4k3 protein_coding Interval_10512 chr1 171413321 171414472 + 0 NA intron (ENSMUSG00000026641.13, intron 1 of 9) protein_coding-intron (ENSMUSG00000026641.13, intron 1 of 9) 2215 ENSMUSG00000026641.13 ENSMUSG00000026641 ENSMUST00000159371 Usf1 protein_coding Interval_143215 chr7 4530089 4530716 + 0 NA exon (ENSMUSG00000085725.2, exon 2 of 2) antisense-exon (ENSMUSG00000085725.2, exon 2 of 2) 2051 ENSMUSG00000055809.7 ENSMUSG00000055809 ENSMUST00000094897 Dnaaf3 protein_coding Interval_109684 chr3 145987430 145988891 + 0 NA promoter-TSS (ENSMUSG00000036863.12) protein_coding-promoter-TSS (ENSMUSG00000036863.12) 23 ENSMUSG00000036863.12 ENSMUSG00000036863 ENSMUST00000195918 Syde2 protein_coding Interval_14167 chr10 28250628 28251802 + 0 NA intron (ENSMUSG00000019889.10, intron 2 of 2) protein_coding-intron (ENSMUSG00000019889.10, intron 2 of 31) -37094 ENSMUSG00000076377.1 ENSMUSG00000076377 ENSMUST00000102422 Gm22370 miRNA Interval_60618 chr15 75727630 75728438 + 0 NA Intergenic Intergenic 17295 ENSMUSG00000022580.13 ENSMUSG00000022580 ENSMUST00000229670 Rhpn1 protein_coding Interval_44744 chr13 48164264 48165509 + 0 NA intron (ENSMUSG00000114457.1, intron 2 of 3) antisense-intron (ENSMUSG00000097622.2, intron 1 of 2) 72365 ENSMUSG00000114457.1 ENSMUSG00000114457 ENSMUST00000225626 Gm36346 lincRNA Interval_10850 chr1 175978505 175979176 + 0 NA exon (ENSMUSG00000078184.1, exon 1 of 1) protein_coding-exon (ENSMUSG00000078184.1, exon 1 of 1) 274 ENSMUSG00000078184.1 ENSMUSG00000078184 ENSMUST00000104983 Rbm8a2 protein_coding Interval_140173 chr6 114999815 115000420 + 0 NA Intergenic Intergenic 37738 ENSMUSG00000030316.13 ENSMUSG00000030316 ENSMUST00000144445 Tamm41 protein_coding Interval_9502 chr1 158162731 158163148 + 0 NA Intergenic Intergenic 193290 ENSMUSG00000004031.13 ENSMUSG00000004031 ENSMUST00000192709 Brinp2 protein_coding Interval_60279 chr15 72083543 72084499 + 0 NA Intergenic Intergenic -77325 ENSMUSG00000116068.1 ENSMUSG00000116068 ENSMUST00000229509 Gm49457 lincRNA Interval_105241 chr3 84135439 84135889 + 0 NA intron (ENSMUSG00000033752.7, intron 3 of 7) protein_coding-intron (ENSMUSG00000033752.7, intron 3 of 7) 20122 ENSMUSG00000033752.7 ENSMUSG00000033752 ENSMUST00000047368 Mnd1 protein_coding Interval_62506 chr15 93576011 93576445 + 0 NA intron (ENSMUSG00000036158.12, intron 1 of 7) protein_coding-intron (ENSMUSG00000036158.12, intron 1 of 7) -56705 ENSMUSG00000036158.12 ENSMUSG00000036158 ENSMUST00000048982 Prickle1 protein_coding Interval_36529 chr12 48511325 48512216 + 0 NA Intergenic Intergenic 16551 ENSMUSG00000112085.1 ENSMUSG00000112085 ENSMUST00000218671 Gm48587 unprocessed_pseudogene Interval_174177 chrX 137209644 137210244 + 0 NA Intergenic Intergenic -3181 ENSMUSG00000082955.1 ENSMUSG00000082955 ENSMUST00000118089 Gm8036 processed_pseudogene Interval_132765 chr5 147743633 147743827 + 0 NA Intergenic Intergenic -1786 ENSMUSG00000106845.1 ENSMUSG00000106845 ENSMUST00000202338 Gm43156 lincRNA Interval_21718 chr11 3912548 3914810 + 0 NA exon (ENSMUSG00000048807.2, exon 1 of 2) protein_coding-exon (ENSMUSG00000048807.2, exon 1 of 2) 985 ENSMUSG00000048807.2 ENSMUSG00000048807 ENSMUST00000051207 Slc35e4 protein_coding Interval_90618 chr2 31512724 31513857 + 0 NA intron (ENSMUSG00000076441.9, intron 3 of 3) protein_coding-intron (ENSMUSG00000076441.9, intron 13 of 15) 12564 ENSMUSG00000076441.9 ENSMUSG00000076441 ENSMUST00000130195 Ass1 protein_coding Interval_70834 chr17 15194626 15195363 + 0 NA Intergenic Intergenic 42835 ENSMUSG00000116655.1 ENSMUSG00000116655 ENSMUST00000231330 Gm35455 lincRNA Interval_117228 chr4 120780653 120780973 + 0 NA intron (ENSMUSG00000032897.17, intron 2 of 2) protein_coding-intron (ENSMUSG00000032897.17, intron 2 of 2) -8116 ENSMUSG00000065409.1 ENSMUSG00000065409 ENSMUST00000083475 Mir30e miRNA Interval_56722 chr14 121652951 121653903 + 0 NA intron (ENSMUSG00000025558.19, intron 7 of 55) protein_coding-intron (ENSMUSG00000025558.19, intron 7 of 53) 85434 ENSMUSG00000025558.19 ENSMUSG00000025558 ENSMUST00000238406 Dock9 protein_coding Interval_168491 chr9 82484070 82484663 + 0 NA Intergenic Intergenic -20914 ENSMUSG00000088760.1 ENSMUSG00000088760 ENSMUST00000158135 Gm24393 snRNA Interval_73523 chr17 39063533 39064355 + 0 NA Intergenic Intergenic 13093 ENSMUSG00000096697.1 ENSMUSG00000096697 ENSMUST00000178532 Esp23 protein_coding Interval_41477 chr12 114792100 114792337 + 0 NA Intergenic Intergenic -3413 ENSMUSG00000094546.1 ENSMUSG00000094546 ENSMUST00000103510 Ighv1-26 IG_V_gene Interval_135352 chr6 38565199 38565623 + 0 NA intron (ENSMUSG00000029823.16, intron 1 of 2) protein_coding-intron (ENSMUSG00000029823.16, intron 1 of 9) 14077 ENSMUSG00000029823.16 ENSMUSG00000029823 ENSMUST00000160430 Luc7l2 protein_coding Interval_26176 chr11 54909325 54910173 + 0 NA TTS (ENSMUSG00000018339.11) protein_coding-TTS (ENSMUSG00000018339.11) 6823 ENSMUSG00000018339.11 ENSMUSG00000018339 ENSMUST00000149324 Gpx3 protein_coding Interval_63750 chr15 103228480 103230069 + 0 NA intron (ENSMUSG00000009575.14, intron 1 of 4) protein_coding-intron (ENSMUSG00000009575.14, intron 1 of 4) -11220 ENSMUSG00000046434.16 ENSMUSG00000046434 ENSMUST00000231141 Hnrnpa1 protein_coding Interval_122448 chr5 22851272 22851908 + 0 NA intron (ENSMUSG00000106379.1, intron 1 of 3) protein_coding-intron (ENSMUSG00000106379.1, intron 1 of 3) 16955 ENSMUSG00000105543.1 ENSMUSG00000105543 ENSMUST00000199544 Gm43169 TEC Interval_145916 chr7 41659754 41660074 + 0 NA Intergenic Intergenic 8204 ENSMUSG00000091401.1 ENSMUSG00000091401 ENSMUST00000172364 Gm9252 processed_pseudogene Interval_126352 chr5 86949766 86950316 + 0 NA Intergenic Intergenic 11673 ENSMUSG00000104798.1 ENSMUSG00000104798 ENSMUST00000198547 Gm20121 processed_pseudogene Interval_143918 chr7 17414414 17415734 + 0 NA intron (ENSMUSG00000108441.1, intron 2 of 5) lincRNA-intron (ENSMUSG00000108441.1, intron 2 of 5) 9025 ENSMUSG00000108441.1 ENSMUSG00000108441 ENSMUST00000205665 Gm32846 lincRNA Interval_65917 chr16 30221951 30222566 + 0 NA Intergenic Intergenic -16379 ENSMUSG00000097621.1 ENSMUSG00000097621 ENSMUST00000181113 Gm26562 lincRNA Interval_133937 chr6 15881879 15882200 + 0 NA Intergenic Intergenic 45950 ENSMUSG00000108048.1 ENSMUSG00000108048 ENSMUST00000203790 Gm43990 TEC Interval_139065 chr6 94717538 94719105 + 0 NA Intergenic Intergenic -18163 ENSMUSG00000030029.14 ENSMUSG00000030029 ENSMUST00000124165 Lrig1 protein_coding Interval_138993 chr6 94079158 94079629 + 0 NA intron (ENSMUSG00000045095.16, intron 1 of 24) protein_coding-intron (ENSMUSG00000045095.16, intron 1 of 21) -166889 ENSMUSG00000045095.16 ENSMUSG00000045095 ENSMUST00000203034 Magi1 protein_coding Interval_93091 chr2 70038817 70039385 + 0 NA promoter-TSS (ENSMUSG00000042064.13) protein_coding-promoter-TSS (ENSMUSG00000042064.13) 190 ENSMUSG00000086132.1 ENSMUSG00000086132 ENSMUST00000140978 Gm13631 processed_transcript Interval_32212 chr11 106201428 106201680 + 0 NA TTS (ENSMUSG00000078622.8) protein_coding-TTS (ENSMUSG00000078622.8) 3988 ENSMUSG00000078622.8 ENSMUSG00000078622 ENSMUST00000153982 Ccdc47 protein_coding Interval_93921 chr2 79356488 79357252 + 0 NA intron (ENSMUSG00000075256.9, intron 2 of 9) protein_coding-intron (ENSMUSG00000075256.9, intron 4 of 12) -2995 ENSMUSG00000081284.1 ENSMUSG00000081284 ENSMUST00000122056 Gm13673 processed_pseudogene Interval_68963 chr16 89746503 89748637 + 0 NA Intergenic Intergenic 47712 ENSMUSG00000002489.16 ENSMUSG00000002489 ENSMUST00000136760 Tiam1 protein_coding Interval_80963 chr18 51302350 51302933 + 0 NA exon (ENSMUSG00000073565.5, exon 2 of 2) protein_coding-exon (ENSMUSG00000073565.5, exon 2 of 2) -48366 ENSMUSG00000095482.1 ENSMUSG00000095482 ENSMUST00000082886 Gm25739 snRNA Interval_90910 chr2 33432850 33433295 + 0 NA Intergenic Intergenic -1755 ENSMUSG00000068966.10 ENSMUSG00000068966 ENSMUST00000134589 Zbtb34 protein_coding Interval_53759 chr14 61564636 61565304 + 0 NA Intergenic Intergenic 6172 ENSMUSG00000114902.1 ENSMUSG00000114902 ENSMUST00000225750 Gm4118 processed_pseudogene Interval_154998 chr8 25575018 25575814 + 0 NA TTS (ENSMUSG00000031565.18) protein_coding-TTS (ENSMUSG00000031565.18) 8550 ENSMUSG00000031565.18 ENSMUSG00000031565 ENSMUST00000133936 Fgfr1 protein_coding Interval_148733 chr7 84739926 84740636 + 0 NA intron (ENSMUSG00000085236.3, intron 2 of 4) antisense-intron (ENSMUSG00000085236.3, intron 2 of 4) -12846 ENSMUSG00000085236.3 ENSMUSG00000085236 ENSMUST00000168496 2610206C17Rik antisense Interval_110920 chr4 10212032 10212213 + 0 NA Intergenic Intergenic 227621 ENSMUSG00000084215.3 ENSMUSG00000084215 ENSMUST00000119515 Gm11814 processed_pseudogene Interval_20043 chr10 112538293 112538807 + 0 NA Intergenic Intergenic 82294 ENSMUSG00000035681.7 ENSMUSG00000035681 ENSMUST00000218827 Kcnc2 protein_coding Interval_27538 chr11 68533449 68533772 + 0 NA exon (ENSMUSG00000046207.14, exon 11 of 20) protein_coding-exon (ENSMUSG00000046207.14, exon 11 of 20) -22576 ENSMUSG00000048329.7 ENSMUSG00000048329 ENSMUST00000053211 Mfsd6l protein_coding Interval_131398 chr5 136937716 136938276 + 0 NA TTS (ENSMUSG00000097908.7) lincRNA-TTS (ENSMUSG00000097908.7) 18815 ENSMUSG00000097908.7 ENSMUSG00000097908 ENSMUST00000181190 4933404O12Rik lincRNA Interval_14297 chr10 30599967 30601497 + 0 NA promoter-TSS (ENSMUSG00000019792.8) protein_coding-promoter-TSS (ENSMUSG00000019792.8) -55 ENSMUSG00000019792.8 ENSMUSG00000019792 ENSMUST00000216638 Trmt11 protein_coding Interval_17800 chr10 80165011 80165299 + 0 NA promoter-TSS (ENSMUSG00000045193.13) protein_coding-promoter-TSS (ENSMUSG00000045193.13) -830 ENSMUSG00000045193.13 ENSMUSG00000045193 ENSMUST00000147190 Cirbp protein_coding Interval_158784 chr8 86477451 86477684 + 0 NA Intergenic Intergenic 89023 ENSMUSG00000036872.16 ENSMUSG00000036872 ENSMUST00000152438 Abcc12 protein_coding Interval_58346 chr15 32934713 32935510 + 0 NA intron (ENSMUSG00000022261.6, intron 1 of 4) protein_coding-intron (ENSMUSG00000022261.6, intron 1 of 4) 14388 ENSMUSG00000022261.6 ENSMUSG00000022261 ENSMUST00000022871 Sdc2 protein_coding Interval_98024 chr2 146855450 146856500 + 0 NA promoter-TSS (ENSMUSG00000074749.10) protein_coding-promoter-TSS (ENSMUSG00000074749.10) 66 ENSMUSG00000074749.10 ENSMUSG00000074749 ENSMUST00000135595 Kiz protein_coding Interval_12494 chr1 194373503 194374839 + 0 NA Intergenic Intergenic -151412 ENSMUSG00000103692.1 ENSMUSG00000103692 ENSMUST00000193395 4930503O07Rik lincRNA Interval_117135 chr4 119903921 119904223 + 0 NA intron (ENSMUSG00000028634.17, intron 1 of 1) protein_coding-intron (ENSMUSG00000028634.17, intron 1 of 8) -128694 ENSMUSG00000028634.17 ENSMUSG00000028634 ENSMUST00000166542 Hivep3 protein_coding Interval_2072 chr1 36251251 36251793 + 0 NA Intergenic Intergenic -6802 ENSMUSG00000037470.14 ENSMUSG00000037470 ENSMUST00000192159 Uggt1 protein_coding Interval_113278 chr4 53030510 53030765 + 0 NA TTS (ENSMUSG00000015243.4) protein_coding-TTS (ENSMUSG00000015243.4) 9661 ENSMUSG00000015247.10 ENSMUSG00000015247 ENSMUST00000132678 Nipsnap3b protein_coding Interval_34333 chr12 3438001 3438441 + 0 NA promoter-TSS (ENSMUSG00000118499.1) processed_pseudogene-promoter-TSS (ENSMUSG00000118499.1) -294 ENSMUSG00000118499.1 ENSMUSG00000118499 ENSMUST00000239031 AC160138.1 processed_pseudogene Interval_34326 chr12 3400740 3401829 + 0 NA promoter-TSS (ENSMUSG00000020668.10) protein_coding-promoter-TSS (ENSMUSG00000020668.10) 2782 ENSMUSG00000112308.1 ENSMUSG00000112308 ENSMUST00000217965 Gm48512 antisense Interval_148630 chr7 83599487 83600277 + 0 NA TTS (ENSMUSG00000038540.14) protein_coding-TTS (ENSMUSG00000038540.14) 2355 ENSMUSG00000038540.14 ENSMUSG00000038540 ENSMUST00000171397 Tmc3 protein_coding Interval_156905 chr8 61579012 61579236 + 0 NA intron (ENSMUSG00000058056.16, intron 10 of 21) protein_coding-intron (ENSMUSG00000058056.16, intron 10 of 19) -63224 ENSMUSG00000058056.16 ENSMUSG00000058056 ENSMUST00000123523 Palld protein_coding Interval_162972 chr9 13889405 13890728 + 0 NA Intergenic Intergenic 21360 ENSMUSG00000111012.1 ENSMUSG00000111012 ENSMUST00000216866 Gm7588 processed_pseudogene Interval_144909 chr7 28879311 28880112 + 0 NA Intergenic Intergenic -3380 ENSMUSG00000108930.1 ENSMUSG00000108930 ENSMUST00000207552 Gm10648 antisense Interval_152216 chr7 130700301 130700934 + 0 NA intron (ENSMUSG00000030852.18, intron 1 of 17) protein_coding-intron (ENSMUSG00000030852.18, intron 1 of 17) -13060 ENSMUSG00000030852.18 ENSMUSG00000030852 ENSMUST00000207230 Tacc2 protein_coding Interval_5353 chr1 87817359 87818225 + 0 NA TTS (ENSMUSG00000056055.13) protein_coding-TTS (ENSMUSG00000056055.13) 14112 ENSMUSG00000056055.13 ENSMUSG00000056055 ENSMUST00000145385 Sag protein_coding Interval_47381 chr13 82604972 82606636 + 0 NA Intergenic Intergenic 92529 ENSMUSG00000106655.1 ENSMUSG00000106655 ENSMUST00000198795 Mir3961 miRNA Interval_47709 chr13 91572786 91573571 + 0 NA intron (ENSMUSG00000003992.15, intron 4 of 6) protein_coding-intron (ENSMUSG00000003992.15, intron 4 of 16) 112008 ENSMUSG00000003992.15 ENSMUSG00000003992 ENSMUST00000137658 Ssbp2 protein_coding Interval_148789 chr7 87494553 87494818 + 0 NA Intergenic Intergenic -1293 ENSMUSG00000004651.6 ENSMUSG00000004651 ENSMUST00000207834 Tyr protein_coding Interval_148538 chr7 82257027 82257711 + 0 NA intron (ENSMUSG00000030638.13, intron 1 of 5) protein_coding-intron (ENSMUSG00000030638.13, intron 1 of 8) 82213 ENSMUSG00000030638.13 ENSMUSG00000030638 ENSMUST00000178526 Sh3gl3 protein_coding Interval_14610 chr10 36992243 36993442 + 0 NA intron (ENSMUSG00000019777.16, intron 1 of 6) protein_coding-intron (ENSMUSG00000019777.16, intron 6 of 13) 1076 ENSMUSG00000019777.16 ENSMUSG00000019777 ENSMUST00000123010 Hdac2 protein_coding Interval_66824 chr16 37915810 37917100 + 0 NA promoter-TSS (ENSMUSG00000046961.8) protein_coding-promoter-TSS (ENSMUSG00000046961.8) -41 ENSMUSG00000046961.8 ENSMUSG00000046961 ENSMUST00000061274 Gpr156 protein_coding Interval_80350 chr18 39802209 39802858 + 0 NA Intergenic Intergenic 29036 ENSMUSG00000051732.2 ENSMUSG00000051732 ENSMUST00000063219 Pabpc2 protein_coding Interval_32045 chr11 104669424 104670257 + 0 NA TTS (ENSMUSG00000020689.4) protein_coding-TTS (ENSMUSG00000020689.4) 10815 ENSMUSG00000083748.1 ENSMUSG00000083748 ENSMUST00000121389 Gm11662 processed_pseudogene Interval_165371 chr9 46814576 46815684 + 0 NA Intergenic Intergenic -15209 ENSMUSG00000111236.1 ENSMUSG00000111236 ENSMUST00000215504 Gm31614 lincRNA Interval_142864 chr6 146545099 146546245 + 0 NA Intergenic Intergenic 32108 ENSMUSG00000040250.14 ENSMUSG00000040250 ENSMUST00000205078 Ints13 protein_coding Interval_142805 chr6 145855639 145856494 + 0 NA Intergenic Intergenic -7231 ENSMUSG00000108126.1 ENSMUSG00000108126 ENSMUST00000203443 Gm43909 TEC Interval_22548 chr11 11696911 11697212 + 0 NA promoter-TSS (ENSMUSG00000073145.6) antisense-promoter-TSS (ENSMUSG00000073145.6) -622 ENSMUSG00000073145.6 ENSMUSG00000073145 ENSMUST00000132007 Gm12000 antisense Interval_32771 chr11 110440256 110440470 + 0 NA intron (ENSMUSG00000020623.11, intron 1 of 11) protein_coding-intron (ENSMUSG00000020623.11, intron 1 of 11) -37014 ENSMUSG00000020623.11 ENSMUSG00000020623 ENSMUST00000133920 Map2k6 protein_coding Interval_71027 chr17 17266192 17266608 + 0 NA TTS (ENSMUSG00000116802.1) lincRNA-TTS (ENSMUSG00000116802.1) 4050 ENSMUSG00000116802.1 ENSMUSG00000116802 ENSMUST00000231376 Gm5165 lincRNA Interval_114652 chr4 83477115 83477846 + 0 NA intron (ENSMUSG00000028484.16, intron 2 of 2) protein_coding-intron (ENSMUSG00000028484.16, intron 3 of 15) -17188 ENSMUSG00000028484.16 ENSMUSG00000028484 ENSMUST00000130626 Psip1 protein_coding Interval_148851 chr7 89300190 89300878 + 0 NA intron (ENSMUSG00000039428.11, intron 3 of 8) protein_coding-intron (ENSMUSG00000039428.11, intron 3 of 14) -4670 ENSMUSG00000096631.1 ENSMUSG00000096631 ENSMUST00000179283 Gm22171 miRNA Interval_145767 chr7 38161414 38161679 + 0 NA Intergenic Intergenic 15125 ENSMUSG00000089230.1 ENSMUSG00000089230 ENSMUST00000158605 Gm22203 snRNA Interval_116232 chr4 108910717 108911511 + 0 NA intron (ENSMUSG00000003411.10, intron 2 of 4) protein_coding-intron (ENSMUSG00000003411.10, intron 1 of 3) 22694 ENSMUSG00000082699.1 ENSMUSG00000082699 ENSMUST00000119330 Gm12736 processed_pseudogene Interval_83161 chr18 82454232 82455918 + 0 NA Intergenic Intergenic 40710 ENSMUSG00000118256.1 ENSMUSG00000118256 ENSMUST00000237372 Gm50303 processed_pseudogene Interval_152988 chr7 140519773 140520680 + 0 NA Intergenic Intergenic -9333 ENSMUSG00000110092.2 ENSMUSG00000110092 ENSMUST00000210949 Olfr537-ps1 polymorphic_pseudogene Interval_127384 chr5 103639973 103641091 + 0 NA Intergenic Intergenic 5307 ENSMUSG00000105018.1 ENSMUSG00000105018 ENSMUST00000196721 Gm43546 TEC Interval_89016 chr2 14546651 14547066 + 0 NA Intergenic Intergenic 34259 ENSMUSG00000084901.6 ENSMUSG00000084901 ENSMUST00000193364 Gm13266 processed_transcript Interval_98202 chr2 149813351 149813567 + 0 NA Intergenic Intergenic -14758 ENSMUSG00000087029.1 ENSMUSG00000087029 ENSMUST00000139471 Gm14133 lincRNA Interval_80044 chr18 36930034 36932562 + 0 NA exon (ENSMUSG00000103442.5, exon 1 of 4) protein_coding-exon (ENSMUSG00000103442.5, exon 1 of 4) 1114 ENSMUSG00000103442.5 ENSMUSG00000103442 ENSMUST00000070797 Pcdha1 protein_coding Interval_4863 chr1 80389063 80389347 + 0 NA Intergenic Intergenic -4020 ENSMUSG00000090637.2 ENSMUSG00000090637 ENSMUST00000164487 Gm6189 processed_pseudogene Interval_61615 chr15 82967991 82968959 + 0 NA intron (ENSMUSG00000041852.15, intron 1 of 1) protein_coding-intron (ENSMUSG00000041852.15, intron 1 of 1) -9179 ENSMUSG00000092751.1 ENSMUSG00000092751 ENSMUST00000175010 Mir3080 miRNA Interval_10260 chr1 167645007 167645514 + 0 NA Intergenic Intergenic -43977 ENSMUSG00000026686.14 ENSMUSG00000026686 ENSMUST00000028003 Lmx1a protein_coding Interval_157628 chr8 71896938 71897416 + 0 NA Intergenic Intergenic -11458 ENSMUSG00000066880.15 ENSMUSG00000066880 ENSMUST00000119003 Zfp617 protein_coding Interval_47648 chr13 90754846 90755196 + 0 NA Intergenic Intergenic -5091 ENSMUSG00000106360.1 ENSMUSG00000106360 ENSMUST00000198614 Gm44338 miRNA Interval_164868 chr9 42624177 42624451 + 0 NA intron (ENSMUSG00000032017.14, intron 9 of 20) protein_coding-intron (ENSMUSG00000032017.14, intron 7 of 18) -103483 ENSMUSG00000093745.1 ENSMUSG00000093745 ENSMUST00000176676 Gm24420 misc_RNA Interval_83997 chr19 6010543 6011082 + 0 NA TTS (ENSMUSG00000024942.17) protein_coding-TTS (ENSMUSG00000024942.17) -1808 ENSMUSG00000097404.2 ENSMUSG00000097404 ENSMUST00000180505 Gm10814 antisense Interval_56185 chr14 111436334 111436544 + 0 NA Intergenic Intergenic -3127 ENSMUSG00000115650.1 ENSMUSG00000115650 ENSMUST00000226491 Gm48992 lincRNA Interval_57014 chr15 4161742 4162207 + 0 NA Intergenic Intergenic 82671 ENSMUSG00000115032.1 ENSMUSG00000115032 ENSMUST00000227247 Gm49301 processed_pseudogene Interval_42948 chr13 21847412 21848399 + 0 NA Intergenic Intergenic 14162 ENSMUSG00000069303.7 ENSMUSG00000069303 ENSMUST00000110467 Hist1h2br protein_coding Interval_84393 chr19 10598409 10598871 + 0 NA TTS (ENSMUSG00000034371.9) protein_coding-TTS (ENSMUSG00000034371.9) 6792 ENSMUSG00000034371.9 ENSMUSG00000034371 ENSMUST00000236478 Tkfc protein_coding Interval_63236 chr15 99863969 99864212 + 0 NA intron (ENSMUSG00000023022.14, intron 1 of 1) protein_coding-intron (ENSMUSG00000023022.14, intron 1 of 10) 10581 ENSMUSG00000023022.14 ENSMUSG00000023022 ENSMUST00000171450 Lima1 protein_coding Interval_174032 chrX 130576934 130577600 + 0 NA Intergenic Intergenic -15370 ENSMUSG00000083024.1 ENSMUSG00000083024 ENSMUST00000121102 Gm14982 processed_pseudogene Interval_63977 chr16 4963650 4964935 + 0 NA promoter-TSS (ENSMUSG00000022515.6) protein_coding-promoter-TSS (ENSMUSG00000022515.6) -185 ENSMUSG00000022543.9 ENSMUSG00000022543 ENSMUST00000229605 4930451G09Rik transcribed_unitary_pseudogene Interval_101366 chr2 180805410 180806438 + 0 NA Intergenic Intergenic 18706 ENSMUSG00000074507.6 ENSMUSG00000074507 ENSMUST00000148700 Gm14340 lincRNA Interval_16691 chr10 67048209 67050189 + 0 NA intron (ENSMUSG00000019873.8, intron 2 of 8) protein_coding-intron (ENSMUSG00000019873.8, intron 2 of 7) -11877 ENSMUSG00000019873.8 ENSMUSG00000019873 ENSMUST00000219431 Reep3 protein_coding Interval_57606 chr15 12788706 12789896 + 0 NA Intergenic Intergenic 15872 ENSMUSG00000115024.1 ENSMUSG00000115024 ENSMUST00000228527 Gm49277 processed_pseudogene Interval_156992 chr8 63933147 63933460 + 0 NA TTS (ENSMUSG00000109818.1) processed_pseudogene-TTS (ENSMUSG00000109818.1) 139 ENSMUSG00000109818.1 ENSMUSG00000109818 ENSMUST00000210516 Gm35713 processed_pseudogene Interval_108851 chr3 132657260 132658090 + 0 NA Intergenic Intergenic -1893 ENSMUSG00000106313.1 ENSMUSG00000106313 ENSMUST00000196849 Gm9402 processed_pseudogene Interval_49721 chr13 114243959 114244700 + 0 NA Intergenic Intergenic -1689 ENSMUSG00000114655.1 ENSMUSG00000114655 ENSMUST00000225060 4631422I05Rik TEC Interval_26350 chr11 57122078 57122374 + 0 NA intron (ENSMUSG00000020524.16, intron 2 of 15) protein_coding-intron (ENSMUSG00000020524.16, intron 2 of 15) -54292 ENSMUSG00000020524.16 ENSMUSG00000020524 ENSMUST00000173531 Gria1 protein_coding Interval_140540 chr6 119401922 119402290 + 0 NA intron (ENSMUSG00000030168.13, intron 1 of 3) protein_coding-intron (ENSMUSG00000030168.13, intron 1 of 7) 15369 ENSMUSG00000030168.13 ENSMUSG00000030168 ENSMUST00000189710 Adipor2 protein_coding Interval_103810 chr3 53201770 53202720 + 0 NA intron (ENSMUSG00000048332.13, intron 2 of 3) protein_coding-intron (ENSMUSG00000048332.13, intron 2 of 3) -27080 ENSMUSG00000048332.13 ENSMUSG00000048332 ENSMUST00000196913 Lhfp protein_coding Interval_99766 chr2 164779691 164780217 + 0 NA promoter-TSS (ENSMUSG00000017300.9) protein_coding-promoter-TSS (ENSMUSG00000017300.9) 13 ENSMUSG00000017300.9 ENSMUSG00000017300 ENSMUST00000155443 Tnnc2 protein_coding Interval_58085 chr15 27768101 27768312 + 0 NA intron (ENSMUSG00000022263.10, intron 18 of 28) protein_coding-intron (ENSMUSG00000022263.10, intron 37 of 56) -88101 ENSMUSG00000115641.1 ENSMUSG00000115641 ENSMUST00000228765 Gm9891 TEC Interval_169863 chr9 102574237 102574526 + 0 NA Intergenic Intergenic -3154 ENSMUSG00000110739.1 ENSMUSG00000110739 ENSMUST00000214617 Gm17950 processed_pseudogene Interval_78866 chr18 21043136 21043517 + 0 NA Intergenic Intergenic -29018 ENSMUSG00000024313.8 ENSMUSG00000024313 ENSMUST00000082235 Mep1b protein_coding Interval_42771 chr13 19293221 19293430 + 0 NA Intergenic Intergenic 14226 ENSMUSG00000076752.2 ENSMUSG00000076752 ENSMUST00000103561 Trgc2 TR_C_gene Interval_128468 chr5 113490320 113491180 + 0 NA promoter-TSS (ENSMUSG00000063430.9) protein_coding-promoter-TSS (ENSMUSG00000063430.9) -88038 ENSMUSG00000063430.9 ENSMUSG00000063430 ENSMUST00000198673 Wscd2 protein_coding Interval_165879 chr9 54180326 54180786 + 0 NA exon (ENSMUSG00000032274.9, exon 1 of 1) protein_coding-exon (ENSMUSG00000032274.9, exon 1 of 1) 1518 ENSMUSG00000032274.9 ENSMUSG00000032274 ENSMUST00000216974 Cyp19a1 protein_coding Interval_138705 chr6 91301860 91302417 + 0 NA Intergenic Intergenic 62959 ENSMUSG00000030093.7 ENSMUSG00000030093 ENSMUST00000132936 Wnt7a protein_coding Interval_164656 chr9 40357294 40357884 + 0 NA intron (ENSMUSG00000040111.17, intron 2 of 20) protein_coding-intron (ENSMUSG00000040111.17, intron 2 of 19) 9313 ENSMUSG00000110928.1 ENSMUSG00000110928 ENSMUST00000214407 Gm48114 TEC Interval_56291 chr14 116641095 116642721 + 0 NA Intergenic Intergenic -108307 ENSMUSG00000104296.1 ENSMUSG00000104296 ENSMUST00000193536 Gm38045 TEC Interval_142252 chr6 139989623 139989860 + 0 NA TTS (ENSMUSG00000030230.15) protein_coding-TTS (ENSMUSG00000030230.15) 43791 ENSMUSG00000108251.1 ENSMUSG00000108251 ENSMUST00000204787 Gm44112 processed_pseudogene Interval_128252 chr5 112069339 112069741 + 0 NA Intergenic Intergenic -86697 ENSMUSG00000104538.1 ENSMUSG00000104538 ENSMUST00000197688 1700016B01Rik lincRNA Interval_171858 chr9 121812020 121812550 + 0 NA intron (ENSMUSG00000079235.10, intron 10 of 15) protein_coding-intron (ENSMUSG00000079235.10, intron 10 of 15) -2121 ENSMUSG00000079235.10 ENSMUSG00000079235 ENSMUST00000146716 Ccdc13 protein_coding Interval_81969 chr18 66494969 66497014 + 0 NA Intergenic Intergenic -4120 ENSMUSG00000117884.1 ENSMUSG00000117884 ENSMUST00000235885 Gm50156 processed_pseudogene Interval_86479 chr19 40956641 40957430 + 0 NA intron (ENSMUSG00000061132.13, intron 6 of 16) protein_coding-intron (ENSMUSG00000061132.13, intron 6 of 16) 37500 ENSMUSG00000061132.13 ENSMUSG00000061132 ENSMUST00000134568 Blnk protein_coding Interval_134935 chr6 33883125 33884146 + 0 NA intron (ENSMUSG00000029763.17, intron 14 of 17) protein_coding-intron (ENSMUSG00000029763.17, intron 14 of 17) 108776 ENSMUSG00000087441.1 ENSMUSG00000087441 ENSMUST00000155496 Gm13853 lincRNA Interval_164852 chr9 42459073 42459630 + 0 NA intron (ENSMUSG00000037287.15, intron 1 of 2) protein_coding-intron (ENSMUSG00000037287.15, intron 1 of 7) 12888 ENSMUSG00000037287.15 ENSMUSG00000037287 ENSMUST00000213428 Tbcel protein_coding Interval_119451 chr4 137697567 137698404 + 0 NA intron (ENSMUSG00000087476.1, intron 1 of 1) protein_coding-intron (ENSMUSG00000041351.16, intron 2 of 24) 8621 ENSMUSG00000087476.1 ENSMUSG00000087476 ENSMUST00000135358 Rap1gapos antisense Interval_58099 chr15 27891904 27892303 + 0 NA intron (ENSMUSG00000022263.10, intron 6 of 35) protein_coding-intron (ENSMUSG00000022263.10, intron 7 of 56) -24872 ENSMUSG00000115161.1 ENSMUSG00000115161 ENSMUST00000228406 Gm20555 TEC Interval_86027 chr19 35066416 35068023 + 0 NA intron (ENSMUSG00000117865.1, intron 5 of 8) lincRNA-intron (ENSMUSG00000117865.1, intron 5 of 8) 12754 ENSMUSG00000117865.1 ENSMUSG00000117865 ENSMUST00000235823 Gm50137 lincRNA Interval_154220 chr8 13541177 13542274 + 0 NA intron (ENSMUSG00000110278.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000110278.1, intron 1 of 1) 5303 ENSMUSG00000110278.1 ENSMUSG00000110278 ENSMUST00000210253 Gm5608 lincRNA Interval_102127 chr3 18242810 18244108 + 0 NA promoter-TSS (ENSMUSG00000039519.6) protein_coding-promoter-TSS (ENSMUSG00000039519.6) -121 ENSMUSG00000039519.6 ENSMUSG00000039519 ENSMUST00000035625 Cyp7b1 protein_coding Interval_104638 chr3 69019931 69020931 + 0 NA intron (ENSMUSG00000034349.14, intron 1 of 1) protein_coding-intron (ENSMUSG00000034349.14, intron 9 of 23) 10529 ENSMUSG00000065606.1 ENSMUSG00000065606 ENSMUST00000083672 Mir16-2 miRNA Interval_73399 chr17 36987929 36989952 + 0 NA exon (ENSMUSG00000024459.18, exon 1 of 3) protein_coding-exon (ENSMUSG00000024459.18, exon 1 of 3) 248 ENSMUSG00000024459.18 ENSMUSG00000024459 ENSMUST00000113667 H2-M5 protein_coding Interval_82694 chr18 76010612 76011691 + 0 NA intron (ENSMUSG00000044646.15, intron 2 of 5) protein_coding-intron (ENSMUSG00000044646.15, intron 2 of 4) 4526 ENSMUSG00000118311.1 ENSMUSG00000118311 ENSMUST00000238127 1700003O11Rik antisense Interval_165143 chr9 44791722 44793720 + 0 NA TTS (ENSMUSG00000002031.13) protein_coding-TTS (ENSMUSG00000002031.13) 6470 ENSMUSG00000002032.17 ENSMUSG00000002032 ENSMUST00000214431 Tmem25 protein_coding Interval_100406 chr2 168856525 168857080 + 0 NA Intergenic Intergenic 25366 ENSMUSG00000077761.1 ENSMUSG00000077761 ENSMUST00000104573 Gm25214 snoRNA Interval_35158 chr12 17661286 17662207 + 0 NA Intergenic Intergenic -16541 ENSMUSG00000088939.1 ENSMUSG00000088939 ENSMUST00000158314 Gm25925 misc_RNA Interval_58998 chr15 41518474 41519093 + 0 NA intron (ENSMUSG00000022307.16, intron 1 of 15) protein_coding-intron (ENSMUSG00000022307.16, intron 1 of 15) 270128 ENSMUSG00000097232.1 ENSMUSG00000097232 ENSMUST00000180418 Gm26854 antisense Interval_172248 chrX 11899118 11900384 + 0 NA Intergenic Intergenic 13538 ENSMUSG00000083439.1 ENSMUSG00000083439 ENSMUST00000121919 Gm14491 processed_pseudogene Interval_109662 chr3 145808018 145808501 + 0 NA intron (ENSMUSG00000028194.15, intron 1 of 5) protein_coding-intron (ENSMUSG00000028194.15, intron 1 of 5) -2220 ENSMUSG00000028194.15 ENSMUSG00000028194 ENSMUST00000127193 Ddah1 protein_coding Interval_30588 chr11 95273088 95274812 + 0 NA TTS (ENSMUSG00000038909.16) protein_coding-TTS (ENSMUSG00000038909.16) 12421 ENSMUSG00000020872.4 ENSMUSG00000020872 ENSMUST00000021242 Tac4 protein_coding Interval_144934 chr7 28992833 28993792 + 0 NA intron (ENSMUSG00000037337.11, intron 18 of 31) protein_coding-intron (ENSMUSG00000037337.11, intron 17 of 31) -8230 ENSMUSG00000037337.11 ENSMUSG00000037337 ENSMUST00000208784 Map4k1 protein_coding Interval_22929 chr11 17522283 17523369 + 0 NA Intergenic Intergenic -25460 ENSMUSG00000087833.1 ENSMUSG00000087833 ENSMUST00000157208 Gm23959 misc_RNA Interval_83555 chr18 89326138 89326783 + 0 NA intron (ENSMUSG00000073514.4, intron 7 of 7) protein_coding-intron (ENSMUSG00000073514.4, intron 7 of 7) 53157 ENSMUSG00000118274.1 ENSMUSG00000118274 ENSMUST00000236207 Gm50204 processed_pseudogene Interval_134932 chr6 33831544 33832338 + 0 NA intron (ENSMUSG00000029763.17, intron 3 of 4) protein_coding-intron (ENSMUSG00000029763.17, intron 12 of 17) -139787 ENSMUSG00000107103.1 ENSMUSG00000107103 ENSMUST00000202529 Gm43164 TEC Interval_93217 chr2 71222693 71222982 + 0 NA intron (ENSMUSG00000027012.15, intron 3 of 3) protein_coding-intron (ENSMUSG00000027012.15, intron 3 of 15) 10833 ENSMUSG00000027012.15 ENSMUSG00000027012 ENSMUST00000138613 Dync1i2 protein_coding Interval_119676 chr4 139164322 139164649 + 0 NA Intergenic Intergenic 14288 ENSMUSG00000083238.1 ENSMUSG00000083238 ENSMUST00000119538 Hspe1-ps4 processed_pseudogene Interval_125966 chr5 76321184 76322146 + 0 NA intron (ENSMUSG00000029235.14, intron 2 of 4) protein_coding-intron (ENSMUSG00000029235.14, intron 3 of 5) 9468 ENSMUSG00000029235.14 ENSMUSG00000029235 ENSMUST00000031145 Pdcl2 protein_coding Interval_170673 chr9 110014317 110014628 + 0 NA intron (ENSMUSG00000032479.15, intron 3 of 18) protein_coding-intron (ENSMUSG00000032479.15, intron 3 of 18) 8498 ENSMUSG00000105230.1 ENSMUSG00000105230 ENSMUST00000196806 Gm42433 TEC Interval_55251 chr14 79661069 79662112 + 0 NA intron (ENSMUSG00000022025.13, intron 1 of 6) protein_coding-intron (ENSMUSG00000022025.13, intron 1 of 6) -16080 ENSMUSG00000022025.13 ENSMUSG00000022025 ENSMUST00000167524 Cnmd protein_coding Interval_160332 chr8 108491714 108492437 + 0 NA intron (ENSMUSG00000038872.10, intron 3 of 15) protein_coding-intron (ENSMUSG00000038872.10, intron 3 of 15) 45146 ENSMUSG00000109868.1 ENSMUSG00000109868 ENSMUST00000211262 Gm39244 lincRNA Interval_134748 chr6 31195782 31196359 + 0 NA intron (ENSMUSG00000044471.12, intron 1 of 2) lincRNA-intron (ENSMUSG00000044471.12, intron 1 of 2) 20296 ENSMUSG00000044471.12 ENSMUSG00000044471 ENSMUST00000229779 Lncpint lincRNA Interval_34220 chr11 121369044 121370075 + 0 NA intron (ENSMUSG00000025170.13, intron 1 of 2) protein_coding-intron (ENSMUSG00000025170.13, intron 1 of 5) 17645 ENSMUSG00000098981.1 ENSMUSG00000098981 ENSMUST00000184435 Mir7236 miRNA Interval_62462 chr15 93188982 93189679 + 0 NA Intergenic Intergenic -7265 ENSMUSG00000097989.1 ENSMUSG00000097989 ENSMUST00000182581 Gm4335 processed_pseudogene Interval_119886 chr4 140688169 140689087 + 0 NA Intergenic Intergenic -4069 ENSMUSG00000095878.1 ENSMUSG00000095878 ENSMUST00000175041 Gm23045 miRNA Interval_92971 chr2 69055241 69055565 + 0 NA intron (ENSMUSG00000027035.10, intron 6 of 10) protein_coding-intron (ENSMUSG00000027035.10, intron 6 of 9) 37307 ENSMUSG00000102662.1 ENSMUSG00000102662 ENSMUST00000193253 Gm38377 TEC Interval_107052 chr3 103181368 103181654 + 0 NA Intergenic Intergenic -1068 ENSMUSG00000098153.1 ENSMUSG00000098153 ENSMUST00000182561 Gm27024 processed_pseudogene Interval_120651 chr4 149897789 149899012 + 0 NA intron (ENSMUSG00000039911.13, intron 2 of 2) protein_coding-intron (ENSMUSG00000039911.13, intron 2 of 2) -5606 ENSMUSG00000086767.1 ENSMUSG00000086767 ENSMUST00000146532 Gm13070 antisense Interval_87857 chr19 56600761 56601322 + 0 NA exon (ENSMUSG00000025078.9, exon 11 of 11) protein_coding-exon (ENSMUSG00000025078.9, exon 11 of 11) 30244 ENSMUSG00000025078.9 ENSMUSG00000025078 ENSMUST00000236979 Nhlrc2 protein_coding Interval_4205 chr1 71618551 71619530 + 0 NA intron (ENSMUSG00000026193.15, intron 22 of 43) protein_coding-intron (ENSMUSG00000026193.15, intron 22 of 45) -33848 ENSMUSG00000073652.10 ENSMUSG00000073652 ENSMUST00000125934 Apol7d antisense Interval_58249 chr15 31354544 31356046 + 0 NA intron (ENSMUSG00000022237.17, intron 1 of 3) protein_coding-intron (ENSMUSG00000022237.17, intron 1 of 2) -13067 ENSMUSG00000115406.1 ENSMUSG00000115406 ENSMUST00000227460 Gm49300 TEC Interval_88837 chr2 11545533 11548012 + 0 NA intron (ENSMUSG00000026773.19, intron 1 of 11) protein_coding-intron (ENSMUSG00000026773.19, intron 1 of 14) 7150 ENSMUSG00000026773.19 ENSMUSG00000026773 ENSMUST00000145970 Pfkfb3 protein_coding Interval_146305 chr7 45234235 45235906 + 0 NA exon (ENSMUSG00000030798.15, exon 6 of 6) protein_coding-exon (ENSMUSG00000030798.15, exon 6 of 6) 3804 ENSMUSG00000030798.15 ENSMUSG00000030798 ENSMUST00000210372 Cd37 protein_coding Interval_137136 chr6 67936391 67938585 + 0 NA Intergenic Intergenic 5052 ENSMUSG00000096632.2 ENSMUSG00000096632 ENSMUST00000196768 Igkv9-124 IG_V_gene Interval_150313 chr7 109544022 109544219 + 0 NA intron (ENSMUSG00000031024.13, intron 5 of 10) protein_coding-intron (ENSMUSG00000031024.13, intron 5 of 19) 22840 ENSMUSG00000077575.1 ENSMUSG00000077575 ENSMUST00000104387 Gm24888 snoRNA Interval_52185 chr14 39244261 39244500 + 0 NA intron (ENSMUSG00000093383.1, intron 2 of 3) protein_coding-intron (ENSMUSG00000041014.17, intron 1 of 9) 24309 ENSMUSG00000093383.1 ENSMUSG00000093383 ENSMUST00000177185 Gm20642 antisense Interval_56636 chr14 121034523 121036590 + 0 NA promoter-TSS (ENSMUSG00000025555.14) protein_coding-promoter-TSS (ENSMUSG00000025555.14) -66523 ENSMUSG00000025555.14 ENSMUSG00000025555 ENSMUST00000137971 Farp1 protein_coding Interval_135392 chr6 38925820 38926841 + 0 NA intron (ENSMUSG00000106737.1, intron 3 of 4) protein_coding-intron (ENSMUSG00000029925.13, intron 1 of 12) -45535 ENSMUSG00000029925.13 ENSMUSG00000029925 ENSMUST00000161360 Tbxas1 protein_coding Interval_98045 chr2 147170461 147171242 + 0 NA Intergenic Intergenic -13232 ENSMUSG00000086509.2 ENSMUSG00000086509 ENSMUST00000136998 Nkx2-2os antisense Interval_83493 chr18 87524425 87524727 + 0 NA Intergenic Intergenic -49905 ENSMUSG00000117969.1 ENSMUSG00000117969 ENSMUST00000235146 Gm5826 processed_pseudogene Interval_141293 chr6 126975872 126976799 + 0 NA TTS (ENSMUSG00000030347.6) protein_coding-TTS (ENSMUSG00000030347.6) 8990 ENSMUSG00000106898.1 ENSMUSG00000106898 ENSMUST00000201724 Gm43125 processed_pseudogene Interval_134561 chr6 29566242 29566550 + 0 NA intron (ENSMUSG00000012535.14, intron 12 of 23) protein_coding-intron (ENSMUSG00000012535.14, intron 11 of 22) 5123 ENSMUSG00000012535.14 ENSMUSG00000012535 ENSMUST00000166844 Tnpo3 protein_coding Interval_121056 chr4 152490721 152491910 + 0 NA TTS (ENSMUSG00000039577.17) protein_coding-TTS (ENSMUSG00000039577.17) 13137 ENSMUSG00000039577.17 ENSMUSG00000039577 ENSMUST00000123635 Nphp4 protein_coding Interval_112696 chr4 44126839 44127059 + 0 NA exon (ENSMUSG00000035696.15, exon 12 of 12) protein_coding-exon (ENSMUSG00000035696.15, exon 12 of 12) 3711 ENSMUSG00000084274.2 ENSMUSG00000084274 ENSMUST00000148026 Gm12504 transcribed_processed_pseudogene Interval_173167 chrX 73744913 73745775 + 0 NA Intergenic Intergenic -7330 ENSMUSG00000088823.1 ENSMUSG00000088823 ENSMUST00000158198 Gm25226 snoRNA Interval_51302 chr14 25853126 25854122 + 0 NA intron (ENSMUSG00000021866.15, intron 1 of 13) protein_coding-intron (ENSMUSG00000021866.15, intron 1 of 14) 11441 ENSMUSG00000021866.15 ENSMUSG00000021866 ENSMUST00000133547 Anxa11 protein_coding Interval_28017 chr11 72231955 72232694 + 0 NA Intergenic Intergenic 17152 ENSMUSG00000053574.5 ENSMUSG00000053574 ENSMUST00000124762 4930563E22Rik protein_coding Interval_108072 chr3 121354952 121356373 + 0 NA intron (ENSMUSG00000039887.11, intron 2 of 2) protein_coding-intron (ENSMUSG00000039887.11, intron 3 of 3) 17970 ENSMUSG00000084674.1 ENSMUSG00000084674 ENSMUST00000122725 Gm26027 misc_RNA Interval_124581 chr5 51742119 51742325 + 0 NA Intergenic Intergenic 116553 ENSMUSG00000105663.1 ENSMUSG00000105663 ENSMUST00000195938 Gm43606 TEC Interval_56214 chr14 113168371 113168743 + 0 NA Intergenic Intergenic 39736 ENSMUSG00000115260.1 ENSMUSG00000115260 ENSMUST00000227945 Gm49005 processed_pseudogene Interval_44551 chr13 45985847 45986939 + 0 NA Intergenic Intergenic 21042 ENSMUSG00000038152.4 ENSMUSG00000038152 ENSMUST00000189843 5033430I15Rik lincRNA Interval_139721 chr6 108098185 108099074 + 0 NA Intergenic Intergenic 33567 ENSMUSG00000034639.7 ENSMUSG00000034639 ENSMUST00000138140 Setmar protein_coding Interval_117441 chr4 123692181 123692631 + 0 NA Intergenic Intergenic 17621 ENSMUSG00000081170.1 ENSMUSG00000081170 ENSMUST00000120626 Gm12922 processed_pseudogene Interval_37083 chr12 57545097 57547099 + 0 NA promoter-TSS (ENSMUSG00000035451.7) protein_coding-promoter-TSS (ENSMUSG00000035451.7) 818 ENSMUSG00000035451.7 ENSMUSG00000035451 ENSMUST00000218398 Foxa1 protein_coding Interval_46968 chr13 73817667 73817965 + 0 NA TTS (ENSMUSG00000021567.15) protein_coding-TTS (ENSMUSG00000021567.15) -12116 ENSMUSG00000066714.6 ENSMUSG00000066714 ENSMUST00000139696 Gm8062 processed_pseudogene Interval_94811 chr2 94561159 94561399 + 0 NA Intergenic Intergenic -23210 ENSMUSG00000106196.1 ENSMUSG00000106196 ENSMUST00000116740 Gm44461 miRNA Interval_147640 chr7 70514628 70515709 + 0 NA Intergenic Intergenic -16054 ENSMUSG00000108899.1 ENSMUSG00000108899 ENSMUST00000209120 Gm44811 TEC Interval_105101 chr3 81205151 81205804 + 0 NA intron (ENSMUSG00000028019.9, intron 5 of 5) protein_coding-intron (ENSMUSG00000028019.9, intron 4 of 5) -165040 ENSMUSG00000085106.1 ENSMUSG00000085106 ENSMUST00000146657 Gm16000 antisense Interval_158674 chr8 85080336 85081846 + 0 NA promoter-TSS (ENSMUSG00000005150.16) protein_coding-promoter-TSS (ENSMUSG00000005150.16) 118 ENSMUSG00000059355.13 ENSMUSG00000059355 ENSMUST00000140621 Wdr83os protein_coding Interval_67653 chr16 55512772 55513126 + 0 NA Intergenic Intergenic 18218 ENSMUSG00000093292.1 ENSMUSG00000093292 ENSMUST00000175551 Mir5118 miRNA Interval_18553 chr10 87504183 87504644 + 0 NA Intergenic Intergenic -3449 ENSMUSG00000112460.1 ENSMUSG00000112460 ENSMUST00000217737 Gm48120 processed_pseudogene Interval_60180 chr15 67032433 67033793 + 0 NA Intergenic Intergenic -6945 ENSMUSG00000116289.1 ENSMUSG00000116289 ENSMUST00000230911 Gm31342 lincRNA Interval_94646 chr2 92982752 92983501 + 0 NA intron (ENSMUSG00000075028.12, intron 5 of 7) protein_coding-intron (ENSMUSG00000075028.12, intron 5 of 6) -47318 ENSMUSG00000075027.10 ENSMUSG00000075027 ENSMUST00000145926 4631405J19Rik antisense Interval_139803 chr6 108848815 108849006 + 0 NA intron (ENSMUSG00000030104.9, intron 7 of 11) protein_coding-intron (ENSMUSG00000030104.9, intron 7 of 11) 20269 ENSMUSG00000030104.9 ENSMUSG00000030104 ENSMUST00000203302 Edem1 protein_coding Interval_46790 chr13 70545160 70545382 + 0 NA Intergenic Intergenic -28009 ENSMUSG00000101051.6 ENSMUSG00000101051 ENSMUST00000189028 1700100L14Rik antisense Interval_54730 chr14 73776235 73776468 + 0 NA intron (ENSMUSG00000115289.1, intron 2 of 3) lincRNA-intron (ENSMUSG00000115289.1, intron 2 of 3) -8383 ENSMUSG00000093873.1 ENSMUSG00000093873 ENSMUST00000177627 Gm24540 snRNA Interval_38783 chr12 82319579 82320783 + 0 NA intron (ENSMUSG00000042700.16, intron 2 of 21) protein_coding-intron (ENSMUSG00000042700.16, intron 1 of 20) 150705 ENSMUSG00000042700.16 ENSMUSG00000042700 ENSMUST00000221327 Sipa1l1 protein_coding Interval_122700 chr5 24741438 24741789 + 0 NA Intergenic Intergenic 9711 ENSMUSG00000038135.4 ENSMUSG00000038135 ENSMUST00000047119 Crygn protein_coding Interval_4791 chr1 78707454 78707908 + 0 NA TTS (ENSMUSG00000032883.15) protein_coding-TTS (ENSMUSG00000032883.15) 17418 ENSMUSG00000032883.15 ENSMUSG00000032883 ENSMUST00000148608 Acsl3 protein_coding Interval_5180 chr1 86294038 86295484 + 0 NA intron (ENSMUSG00000087538.1, intron 1 of 3) antisense-intron (ENSMUSG00000087538.1, intron 1 of 3) 6614 ENSMUSG00000087538.1 ENSMUSG00000087538 ENSMUST00000126385 Gm16341 antisense Interval_8693 chr1 148541917 148542153 + 0 NA Intergenic Intergenic 43527 ENSMUSG00000101208.1 ENSMUSG00000101208 ENSMUST00000189771 Gm19891 processed_pseudogene Interval_135117 chr6 35607707 35607924 + 0 NA Intergenic Intergenic 7854 ENSMUSG00000107110.1 ENSMUSG00000107110 ENSMUST00000201009 Gm42931 lincRNA Interval_149737 chr7 101028724 101029649 + 0 NA Intergenic Intergenic -10318 ENSMUSG00000108895.1 ENSMUSG00000108895 ENSMUST00000208100 Gm45070 processed_pseudogene Interval_123103 chr5 29720895 29723694 + 0 NA Intergenic Intergenic -2588 ENSMUSG00000105032.1 ENSMUSG00000105032 ENSMUST00000198531 Gm43117 processed_pseudogene Interval_1036 chr1 14274356 14274708 + 0 NA intron (ENSMUSG00000025932.14, intron 3 of 6) protein_coding-intron (ENSMUSG00000025932.14, intron 5 of 17) -18542 ENSMUSG00000102588.1 ENSMUSG00000102588 ENSMUST00000193605 Gm37444 TEC Interval_53956 chr14 63776737 63778357 + 0 NA intron (ENSMUSG00000035067.9, intron 1 of 2) protein_coding-intron (ENSMUSG00000035067.9, intron 1 of 2) 50358 ENSMUSG00000076049.4 ENSMUSG00000076049 ENSMUST00000102094 Mir598 miRNA Interval_166318 chr9 58273805 58276066 + 0 NA Intergenic Intergenic 21747 ENSMUSG00000032333.6 ENSMUSG00000032333 ENSMUST00000216864 Stoml1 protein_coding Interval_102942 chr3 32995958 32996161 + 0 NA intron (ENSMUSG00000027674.16, intron 7 of 14) protein_coding-intron (ENSMUSG00000027674.16, intron 7 of 14) -15899 ENSMUSG00000084665.1 ENSMUSG00000084665 ENSMUST00000122716 Gm23214 snRNA Interval_164142 chr9 31960433 31961028 + 0 NA intron (ENSMUSG00000111771.1, intron 2 of 3) lincRNA-intron (ENSMUSG00000111771.1, intron 2 of 3) 12384 ENSMUSG00000111166.1 ENSMUSG00000111166 ENSMUST00000213734 Tpi-rs4 processed_pseudogene Interval_127204 chr5 101288095 101288638 + 0 NA Intergenic Intergenic -17212 ENSMUSG00000105965.1 ENSMUSG00000105965 ENSMUST00000197114 Cycs-ps2 processed_pseudogene Interval_7485 chr1 131775783 131776198 + 0 NA Intergenic Intergenic 31952 ENSMUSG00000042268.10 ENSMUSG00000042268 ENSMUST00000147800 Slc26a9 protein_coding Interval_43579 chr13 33797048 33797383 + 0 NA intron (ENSMUSG00000080317.3, intron 3 of 3) unprocessed_pseudogene-intron (ENSMUSG00000080317.3, intron 3 of 3) 30295 ENSMUSG00000080317.3 ENSMUSG00000080317 ENSMUST00000116665 Vmn2r-ps94 unprocessed_pseudogene Interval_11171 chr1 179836694 179837538 + 0 NA Intergenic Intergenic 33740 ENSMUSG00000073486.2 ENSMUSG00000073486 ENSMUST00000097454 Gm10518 antisense Interval_170977 chr9 113441919 113442653 + 0 NA Intergenic Intergenic 22175 ENSMUSG00000111199.1 ENSMUSG00000111199 ENSMUST00000216389 Gm47875 lincRNA Interval_22130 chr11 6515011 6515389 + 0 NA exon (ENSMUSG00000020437.12, exon 10 of 22) protein_coding-exon (ENSMUSG00000020437.12, exon 10 of 22) 5758 ENSMUSG00000020437.12 ENSMUSG00000020437 ENSMUST00000134489 Myo1g protein_coding Interval_165381 chr9 46916561 46917792 + 0 NA intron (ENSMUSG00000099696.6, intron 1 of 3) lincRNA-intron (ENSMUSG00000099696.6, intron 1 of 3) 3683 ENSMUSG00000099696.6 ENSMUSG00000099696 ENSMUST00000189828 2900052N01Rik lincRNA Interval_66832 chr16 37963700 37963916 + 0 NA intron (ENSMUSG00000046961.8, intron 3 of 9) protein_coding-intron (ENSMUSG00000046961.8, intron 3 of 9) -16279 ENSMUSG00000065188.1 ENSMUSG00000065188 ENSMUST00000083254 Gm25140 snRNA Interval_77415 chr17 88556908 88557272 + 0 NA intron (ENSMUSG00000034709.8, intron 9 of 21) protein_coding-intron (ENSMUSG00000034709.8, intron 9 of 21) -5027 ENSMUSG00000034709.8 ENSMUSG00000034709 ENSMUST00000185400 Ppp1r21 protein_coding Interval_164593 chr9 39662117 39662408 + 0 NA Intergenic Intergenic 3961 ENSMUSG00000111573.1 ENSMUSG00000111573 ENSMUST00000217332 Olfr962-ps1 unprocessed_pseudogene Interval_69184 chr16 91192825 91193089 + 0 NA Intergenic Intergenic -17623 ENSMUSG00000116713.1 ENSMUSG00000116713 ENSMUST00000231233 Gm49613 processed_pseudogene Interval_48963 chr13 106223531 106223787 + 0 NA Intergenic Intergenic -25888 ENSMUSG00000108515.1 ENSMUSG00000108515 ENSMUST00000205589 Olfr717-ps1 unprocessed_pseudogene Interval_8988 chr1 152933891 152934492 + 0 NA Intergenic Intergenic -2413 ENSMUSG00000103840.1 ENSMUSG00000103840 ENSMUST00000195145 1700040K01Rik TEC Interval_19222 chr10 95588599 95589490 + 0 NA Intergenic Intergenic -14748 ENSMUSG00000089618.1 ENSMUSG00000089618 ENSMUST00000158993 Gm23776 misc_RNA Interval_72868 chr17 32787466 32789389 + 0 NA promoter-TSS (ENSMUSG00000024298.15) protein_coding-promoter-TSS (ENSMUSG00000024298.15) 33 ENSMUSG00000091968.1 ENSMUSG00000091968 ENSMUST00000164075 Gm17115 bidirectional_promoter_lncRNA Interval_65612 chr16 24067784 24068186 + 0 NA Intergenic Intergenic 14705 ENSMUSG00000116437.1 ENSMUSG00000116437 ENSMUST00000230580 Gm46545 lincRNA Interval_28559 chr11 76709767 76710250 + 0 NA Intergenic Intergenic 30200 ENSMUSG00000046275.2 ENSMUSG00000046275 ENSMUST00000062024 Trarg1 protein_coding Interval_83151 chr18 82272632 82272856 + 0 NA Intergenic Intergenic -8541 ENSMUSG00000118279.1 ENSMUSG00000118279 ENSMUST00000237322 Gm50298 lincRNA Interval_106252 chr3 94926735 94926954 + 0 NA Intergenic Intergenic -6315 ENSMUSG00000068874.13 ENSMUSG00000068874 ENSMUST00000145551 Selenbp1 protein_coding Interval_158370 chr8 83089271 83089802 + 0 NA exon (ENSMUSG00000047747.10, exon 7 of 7) protein_coding-exon (ENSMUSG00000047747.10, exon 7 of 7) -2579 ENSMUSG00000109876.1 ENSMUSG00000109876 ENSMUST00000211485 Gm45449 antisense Interval_147427 chr7 66955484 66955662 + 0 NA intron (ENSMUSG00000058145.16, intron 8 of 8) protein_coding-intron (ENSMUSG00000058145.16, intron 7 of 22) 6345 ENSMUSG00000109079.1 ENSMUSG00000109079 ENSMUST00000207830 Gm44755 TEC Interval_58801 chr15 38145230 38145936 + 0 NA Intergenic Intergenic 56634 ENSMUSG00000115680.1 ENSMUSG00000115680 ENSMUST00000227576 Gm35167 lincRNA Interval_128869 chr5 115757277 115758145 + 0 NA Intergenic Intergenic 44448 ENSMUSG00000083833.4 ENSMUSG00000083833 ENSMUST00000118829 Gm13841 processed_pseudogene Interval_163158 chr9 15978316 15978831 + 0 NA intron (ENSMUSG00000074505.6, intron 13 of 25) protein_coding-intron (ENSMUSG00000074505.6, intron 12 of 24) -104017 ENSMUSG00000050901.6 ENSMUSG00000050901 ENSMUST00000057920 Mtnr1b protein_coding Interval_141420 chr6 128142205 128144138 + 0 NA intron (ENSMUSG00000030352.15, intron 1 of 6) protein_coding-intron (ENSMUSG00000030352.15, intron 1 of 8) 23751 ENSMUSG00000108220.1 ENSMUSG00000108220 ENSMUST00000204623 Gm44056 TEC Interval_98059 chr2 147305307 147305988 + 0 NA exon (ENSMUSG00000086509.2, exon 5 of 6) antisense-exon (ENSMUSG00000086509.2, exon 5 of 6) -1534 ENSMUSG00000098763.1 ENSMUSG00000098763 ENSMUST00000184407 Nkx2-2os misc_RNA Interval_67037 chr16 41860482 41861296 + 0 NA intron (ENSMUSG00000061080.11, intron 3 of 8) protein_coding-intron (ENSMUSG00000061080.11, intron 1 of 5) 324028 ENSMUSG00000116841.1 ENSMUSG00000116841 ENSMUST00000232237 Gm49737 processed_pseudogene Interval_104475 chr3 66232234 66233674 + 0 NA intron (ENSMUSG00000027831.9, intron 4 of 13) protein_coding-intron (ENSMUSG00000027831.9, intron 4 of 13) 12709 ENSMUSG00000027832.5 ENSMUSG00000027832 ENSMUST00000182521 Ptx3 protein_coding Interval_115849 chr4 105225351 105226417 + 0 NA intron (ENSMUSG00000028517.8, intron 5 of 5) protein_coding-intron (ENSMUSG00000028517.8, intron 5 of 5) 68537 ENSMUSG00000028517.8 ENSMUSG00000028517 ENSMUST00000064139 Plpp3 protein_coding Interval_123986 chr5 37027925 37029946 + 0 NA promoter-TSS (ENSMUSG00000063646.18) protein_coding-promoter-TSS (ENSMUSG00000063646.18) 12711 ENSMUSG00000097686.1 ENSMUSG00000097686 ENSMUST00000180816 Gm26647 antisense Interval_39744 chr12 96460950 96461140 + 0 NA Intergenic Intergenic 168623 ENSMUSG00000112658.1 ENSMUSG00000112658 ENSMUST00000218908 Gm47395 processed_pseudogene Interval_68561 chr16 78725373 78725703 + 0 NA Intergenic Intergenic 30504 ENSMUSG00000116786.1 ENSMUSG00000116786 ENSMUST00000231496 4930570E03Rik lincRNA Interval_30117 chr11 89332034 89332480 + 0 NA Intergenic Intergenic 29534 ENSMUSG00000085798.1 ENSMUSG00000085798 ENSMUST00000140754 Gm2018 lincRNA Interval_44036 chr13 40258698 40259690 + 0 NA intron (ENSMUSG00000047094.9, intron 4 of 17) protein_coding-intron (ENSMUSG00000047094.9, intron 4 of 18) 28817 ENSMUSG00000047094.9 ENSMUSG00000047094 ENSMUST00000224813 Ofcc1 protein_coding Interval_148484 chr7 81630107 81630739 + 0 NA intron (ENSMUSG00000025813.14, intron 3 of 6) protein_coding-intron (ENSMUSG00000025813.14, intron 3 of 8) 20314 ENSMUSG00000109194.1 ENSMUSG00000109194 ENSMUST00000207526 Gm44570 antisense Interval_142876 chr6 146622169 146622653 + 0 NA intron (ENSMUSG00000040234.16, intron 3 of 3) protein_coding-intron (ENSMUSG00000040234.16, intron 3 of 11) -20180 ENSMUSG00000030291.12 ENSMUSG00000030291 ENSMUST00000075077 Med21 protein_coding Interval_40241 chr12 102704363 102705838 + 0 NA promoter-TSS (ENSMUSG00000057963.9) protein_coding-promoter-TSS (ENSMUSG00000057963.9) -20080 ENSMUSG00000089324.1 ENSMUSG00000089324 ENSMUST00000158699 Mir1936 miRNA Interval_70866 chr17 15472428 15473412 + 0 NA Intergenic Intergenic 13115 ENSMUSG00000116985.1 ENSMUSG00000116985 ENSMUST00000231639 Gm49669 processed_pseudogene Interval_36988 chr12 55945334 55945714 + 0 NA Intergenic Intergenic -34601 ENSMUSG00000065244.1 ENSMUSG00000065244 ENSMUST00000083310 Gm22296 snRNA Interval_147576 chr7 68382179 68382382 + 0 NA Intergenic Intergenic -2499 ENSMUSG00000109458.1 ENSMUSG00000109458 ENSMUST00000207674 Gm44889 lincRNA Interval_58934 chr15 40171420 40172396 + 0 NA Intergenic Intergenic 9301 ENSMUSG00000115367.1 ENSMUSG00000115367 ENSMUST00000228503 Gm33301 lincRNA Interval_1912 chr1 34505061 34505583 + 0 NA Intergenic Intergenic 6901 ENSMUSG00000026125.9 ENSMUSG00000026125 ENSMUST00000191604 Prss39 protein_coding Interval_73571 chr17 40601185 40601622 + 0 NA intron (ENSMUSG00000095540.1, intron 2 of 2) protein_coding-intron (ENSMUSG00000095540.1, intron 2 of 2) 2809 ENSMUSG00000095540.1 ENSMUSG00000095540 ENSMUST00000178498 Esp4 protein_coding Interval_67162 chr16 44074192 44074446 + 0 NA Intergenic Intergenic -12774 ENSMUSG00000036292.14 ENSMUSG00000036292 ENSMUST00000214764 Gramd1c protein_coding Interval_42397 chr13 12668052 12668259 + 0 NA Intergenic Intergenic 2104 ENSMUSG00000088112.1 ENSMUSG00000088112 ENSMUST00000157487 Gm24065 misc_RNA Interval_154623 chr8 22123655 22125642 + 0 NA intron (ENSMUSG00000037738.11, intron 1 of 18) protein_coding-intron (ENSMUSG00000037738.11, intron 1 of 19) -16755 ENSMUSG00000037738.11 ENSMUSG00000037738 ENSMUST00000213644 Nek5 protein_coding Interval_102273 chr3 20204083 20204294 + 0 NA Intergenic Intergenic 18171 ENSMUSG00000099105.1 ENSMUSG00000099105 ENSMUST00000184606 Mir7007 miRNA Interval_165017 chr9 43953284 43953533 + 0 NA intron (ENSMUSG00000111758.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000111758.1, intron 1 of 2) 16763 ENSMUSG00000111758.1 ENSMUSG00000111758 ENSMUST00000217507 Gm30373 lincRNA Interval_147805 chr7 73653475 73654955 + 0 NA Intergenic Intergenic -7833 ENSMUSG00000089391.1 ENSMUSG00000089391 ENSMUST00000158766 Gm23020 misc_RNA Interval_6557 chr1 116388018 116388289 + 0 NA intron (ENSMUSG00000070695.4, intron 13 of 23) protein_coding-intron (ENSMUSG00000070695.4, intron 13 of 23) 6260 ENSMUSG00000092948.1 ENSMUSG00000092948 ENSMUST00000175207 Gm23393 miRNA Interval_146285 chr7 45128524 45129488 + 0 NA promoter-TSS (ENSMUSG00000074129.14) protein_coding-promoter-TSS (ENSMUSG00000074129.14) -1542 ENSMUSG00000065219.1 ENSMUSG00000065219 ENSMUST00000083285 Snord32a snoRNA Interval_125313 chr5 66139333 66140527 + 0 NA intron (ENSMUSG00000070780.11, intron 1 of 2) protein_coding-intron (ENSMUSG00000070780.11, intron 1 of 5) 11026 ENSMUSG00000070780.11 ENSMUSG00000070780 ENSMUST00000201670 Rbm47 protein_coding Interval_36809 chr12 54233256 54234037 + 0 NA promoter-TSS (ENSMUSG00000112821.1) lincRNA-promoter-TSS (ENSMUSG00000112821.1) 31 ENSMUSG00000112821.1 ENSMUSG00000112821 ENSMUST00000220132 1700104L18Rik lincRNA Interval_140829 chr6 121962228 121962424 + 0 NA Intergenic Intergenic -44435 ENSMUSG00000030131.8 ENSMUSG00000030131 ENSMUST00000081777 Mug2 protein_coding Interval_11513 chr1 182357630 182358382 + 0 NA Intergenic Intergenic -16435 ENSMUSG00000047539.9 ENSMUSG00000047539 ENSMUST00000194213 Fbxo28 protein_coding Interval_98897 chr2 155875796 155876599 + 0 NA intron (ENSMUSG00000005882.18, intron 7 of 7) protein_coding-intron (ENSMUSG00000005882.18, intron 4 of 6) -41343 ENSMUSG00000074647.4 ENSMUSG00000074647 ENSMUST00000239423 Fam83c protein_coding Interval_23800 chr11 26401106 26401562 + 0 NA intron (ENSMUSG00000004018.9, intron 3 of 4) protein_coding-intron (ENSMUSG00000004018.9, intron 3 of 13) -7873 ENSMUSG00000081811.1 ENSMUSG00000081811 ENSMUST00000118404 Gm12713 processed_pseudogene Interval_42166 chr13 9398774 9399017 + 0 NA intron (ENSMUSG00000048264.16, intron 1 of 36) protein_coding-intron (ENSMUSG00000048264.16, intron 1 of 38) -13622 ENSMUSG00000112955.1 ENSMUSG00000112955 ENSMUST00000221027 Gm48889 TEC Interval_172836 chrX 51017460 51019159 + 0 NA promoter-TSS (ENSMUSG00000050029.7) protein_coding-promoter-TSS (ENSMUSG00000050029.7) -291 ENSMUSG00000050029.7 ENSMUSG00000050029 ENSMUST00000053593 Rap2c protein_coding Interval_59774 chr15 59145595 59147151 + 0 NA Intergenic Intergenic -64368 ENSMUSG00000022353.10 ENSMUSG00000022353 ENSMUST00000227797 Mtss1 protein_coding Interval_76250 chr17 78454880 78455531 + 0 NA Intergenic Intergenic -3440 ENSMUSG00000117180.1 ENSMUSG00000117180 ENSMUST00000233571 Gm19399 processed_pseudogene Interval_172133 chrX 7869406 7870456 + 0 NA intron (ENSMUSG00000031154.15, intron 4 of 7) protein_coding-intron (ENSMUSG00000031154.15, intron 5 of 8) -8687 ENSMUSG00000031155.17 ENSMUSG00000031155 ENSMUST00000145177 Pim2 protein_coding Interval_126265 chr5 85282292 85282867 + 0 NA Intergenic Intergenic -415734 ENSMUSG00000106389.1 ENSMUSG00000106389 ENSMUST00000196930 Gm21006 processed_pseudogene Interval_113139 chr4 48575994 48576558 + 0 NA Intergenic Intergenic 35730 ENSMUSG00000039693.11 ENSMUSG00000039693 ENSMUST00000132360 Msantd3 protein_coding Interval_92196 chr2 55941070 55942000 + 0 NA Intergenic Intergenic 31459 ENSMUSG00000082499.1 ENSMUSG00000082499 ENSMUST00000120242 Gm13615 processed_pseudogene Interval_173808 chrX 104622763 104623314 + 0 NA intron (ENSMUSG00000033906.5, intron 2 of 11) protein_coding-intron (ENSMUSG00000033906.5, intron 2 of 11) 6173 ENSMUSG00000089171.1 ENSMUSG00000089171 ENSMUST00000158546 Gm22430 snoRNA Interval_34117 chr11 120729073 120729930 + 0 NA TTS (ENSMUSG00000025150.10) protein_coding-TTS (ENSMUSG00000025150.10) -2257 ENSMUSG00000039450.11 ENSMUSG00000039450 ENSMUST00000122883 Dcxr protein_coding Interval_130687 chr5 129756745 129757361 + 0 NA intron (ENSMUSG00000029432.12, intron 7 of 7) protein_coding-intron (ENSMUSG00000029432.12, intron 9 of 9) 28881 ENSMUSG00000086916.2 ENSMUSG00000086916 ENSMUST00000199631 Gm15903 sense_intronic Interval_73362 chr17 36726226 36726634 + 0 NA Intergenic Intergenic 2482 ENSMUSG00000092435.1 ENSMUSG00000092435 ENSMUST00000173416 Gm20526 unprocessed_pseudogene Interval_14719 chr10 39340115 39341092 + 0 NA Intergenic Intergenic -17186 ENSMUSG00000111183.1 ENSMUSG00000111183 ENSMUST00000215530 Gm48486 lincRNA Interval_71139 chr17 19544956 19545840 + 0 NA Intergenic Intergenic -31829 ENSMUSG00000094892.2 ENSMUSG00000094892 ENSMUST00000171914 Vmn2r101 protein_coding Interval_97879 chr2 144705284 144705797 + 0 NA intron (ENSMUSG00000027430.12, intron 2 of 2) protein_coding-intron (ENSMUSG00000027430.12, intron 4 of 5) -50789 ENSMUSG00000084306.1 ENSMUSG00000084306 ENSMUST00000117385 Gm11743 processed_pseudogene Interval_59047 chr15 42233562 42233987 + 0 NA Intergenic Intergenic 23006 ENSMUSG00000115985.1 ENSMUSG00000115985 ENSMUST00000230056 Gm18531 processed_pseudogene Interval_156464 chr8 48448796 48450213 + 0 NA intron (ENSMUSG00000031561.16, intron 2 of 26) protein_coding-intron (ENSMUSG00000031561.16, intron 2 of 28) 105809 ENSMUSG00000031561.16 ENSMUSG00000031561 ENSMUST00000211812 Tenm3 protein_coding Interval_56124 chr14 106117338 106118606 + 0 NA intron (ENSMUSG00000022113.6, intron 1 of 1) protein_coding-intron (ENSMUSG00000022113.6, intron 1 of 1) 11773 ENSMUSG00000022113.6 ENSMUSG00000022113 ENSMUST00000194236 Trim52 protein_coding Interval_45404 chr13 54911765 54913688 + 0 NA promoter-TSS (ENSMUSG00000085896.2) lincRNA-promoter-TSS (ENSMUSG00000085896.2) -509 ENSMUSG00000085896.2 ENSMUSG00000085896 ENSMUST00000154615 5330429C05Rik lincRNA Interval_81588 chr18 61916529 61917274 + 0 NA Intergenic Intergenic -5078 ENSMUSG00000032735.15 ENSMUSG00000032735 ENSMUST00000049378 Ablim3 protein_coding Interval_63992 chr16 5092830 5093097 + 0 NA intron (ENSMUSG00000039457.4, intron 19 of 21) protein_coding-intron (ENSMUSG00000039457.4, intron 19 of 21) -32081 ENSMUSG00000077367.1 ENSMUSG00000077367 ENSMUST00000104179 Gm23483 snRNA Interval_2998 chr1 52003724 52004337 + 0 NA intron (ENSMUSG00000062939.11, intron 2 of 24) protein_coding-intron (ENSMUSG00000062939.11, intron 2 of 24) -62769 ENSMUSG00000072324.4 ENSMUSG00000072324 ENSMUST00000097103 Gm8420 processed_pseudogene Interval_105282 chr3 84547076 84547516 + 0 NA intron (ENSMUSG00000102805.5, intron 3 of 9) protein_coding-intron (ENSMUSG00000074513.9, intron 2 of 7) 6156 ENSMUSG00000085625.1 ENSMUSG00000085625 ENSMUST00000155930 Gm8813 processed_pseudogene Interval_122879 chr5 26785160 26785933 + 0 NA Intergenic Intergenic 42959 ENSMUSG00000104733.1 ENSMUSG00000104733 ENSMUST00000196217 Gm29784 processed_pseudogene Interval_24115 chr11 30471398 30472572 + 0 NA promoter-TSS (ENSMUSG00000040919.13) protein_coding-promoter-TSS (ENSMUSG00000040919.13) -158 ENSMUSG00000040919.13 ENSMUSG00000040919 ENSMUST00000152718 4930505A04Rik protein_coding Interval_40200 chr12 102514060 102515352 + 0 NA Intergenic Intergenic 30249 ENSMUSG00000021192.16 ENSMUSG00000021192 ENSMUST00000222744 Golga5 protein_coding Interval_120636 chr4 149811730 149812443 + 0 NA Intergenic Intergenic 3136 ENSMUSG00000083173.1 ENSMUSG00000083173 ENSMUST00000119125 Gm13064 processed_pseudogene Interval_115886 chr4 105703862 105704694 + 0 NA Intergenic Intergenic -86256 ENSMUSG00000083780.8 ENSMUSG00000083780 ENSMUST00000119740 Gm12728 protein_coding Interval_28345 chr11 75305719 75305942 + 0 NA intron (ENSMUSG00000000751.13, intron 15 of 16) protein_coding-intron (ENSMUSG00000000751.13, intron 16 of 17) 12778 ENSMUSG00000106179.1 ENSMUSG00000106179 ENSMUST00000198372 Gm47300 miRNA Interval_124957 chr5 62152202 62152467 + 0 NA Intergenic Intergenic -19850 ENSMUSG00000077228.1 ENSMUSG00000077228 ENSMUST00000104040 Gm22273 snoRNA Interval_136256 chr6 52313411 52317179 + 0 NA promoter-TSS (ENSMUSG00000086126.1) antisense-promoter-TSS (ENSMUSG00000086126.1) 1743 ENSMUSG00000005503.8 ENSMUSG00000005503 ENSMUST00000129243 Evx1 protein_coding Interval_130577 chr5 128991567 128992175 + 0 NA intron (ENSMUSG00000029428.13, intron 6 of 7) protein_coding-intron (ENSMUSG00000029428.13, intron 6 of 10) 16675 ENSMUSG00000029428.13 ENSMUSG00000029428 ENSMUST00000199813 Stx2 protein_coding Interval_23989 chr11 29203416 29204050 + 0 NA intron (ENSMUSG00000020463.15, intron 10 of 11) protein_coding-intron (ENSMUSG00000020463.15, intron 10 of 15) 29986 ENSMUSG00000020463.15 ENSMUSG00000020463 ENSMUST00000148759 Ppp4r3b protein_coding Interval_89062 chr2 15164407 15164802 + 0 NA Intergenic Intergenic 37004 ENSMUSG00000083860.2 ENSMUSG00000083860 ENSMUST00000118938 Gm13313 processed_pseudogene Interval_141772 chr6 134369697 134370251 + 0 NA intron (ENSMUSG00000107666.1, intron 3 of 8) antisense-intron (ENSMUSG00000107666.1, intron 3 of 8) -28666 ENSMUSG00000030200.13 ENSMUSG00000030200 ENSMUST00000142612 Bcl2l14 protein_coding Interval_26063 chr11 53858511 53859996 + 0 NA promoter-TSS (ENSMUSG00000081769.9) protein_coding-promoter-TSS (ENSMUSG00000081769.9) -9205 ENSMUSG00000081769.9 ENSMUSG00000081769 ENSMUST00000121435 Gm12216 protein_coding Interval_27944 chr11 71258891 71259146 + 0 NA intron (ENSMUSG00000092528.9, intron 3 of 11) transcribed_unprocessed_pseudogene-intron (ENSMUSG00000092528.9, intron 4 of 12) 22201 ENSMUSG00000092528.9 ENSMUSG00000092528 ENSMUST00000171546 Nlrp1c-ps transcribed_unprocessed_pseudogene Interval_146931 chr7 55974349 55974671 + 0 NA exon (ENSMUSG00000108358.1, exon 1 of 1) TEC-exon (ENSMUSG00000108358.1, exon 1 of 1) 332 ENSMUSG00000108358.1 ENSMUSG00000108358 ENSMUST00000205400 Gm44509 TEC Interval_118871 chr4 134186358 134187580 + 0 NA promoter-TSS (ENSMUSG00000037443.13) protein_coding-promoter-TSS (ENSMUSG00000037443.13) 13181 ENSMUSG00000081772.1 ENSMUSG00000081772 ENSMUST00000122228 Gm13131 processed_pseudogene Interval_59335 chr15 51751599 51751807 + 0 NA Intergenic Intergenic 84554 ENSMUSG00000022312.11 ENSMUSG00000022312 ENSMUST00000228583 Eif3h protein_coding Interval_2857 chr1 46769216 46769761 + 0 NA intron (ENSMUSG00000101337.6, intron 56 of 64) protein_coding-intron (ENSMUSG00000101337.6, intron 56 of 64) 80991 ENSMUSG00000100213.1 ENSMUSG00000100213 ENSMUST00000189404 Gm28151 lincRNA Interval_20185 chr10 115518286 115518639 + 0 NA intron (ENSMUSG00000020140.15, intron 2 of 16) protein_coding-intron (ENSMUSG00000020140.15, intron 2 of 17) -51524 ENSMUSG00000092210.1 ENSMUSG00000092210 ENSMUST00000173620 A930009A15Rik protein_coding Interval_163985 chr9 30423086 30423395 + 0 NA intron (ENSMUSG00000111109.1, intron 1 of 2) bidirectional_promoter_lncRNA-intron (ENSMUSG00000111109.1, intron 1 of 2) 3736 ENSMUSG00000111109.1 ENSMUSG00000111109 ENSMUST00000217174 Gm30933 bidirectional_promoter_lncRNA Interval_64951 chr16 17478235 17478839 + 0 NA intron (ENSMUSG00000006134.4, intron 2 of 2) protein_coding-intron (ENSMUSG00000006134.4, intron 2 of 2) 4612 ENSMUSG00000088993.1 ENSMUSG00000088993 ENSMUST00000158368 Gm22770 snRNA Interval_118291 chr4 130078628 130079114 + 0 NA promoter-TSS (ENSMUSG00000040690.15) protein_coding-promoter-TSS (ENSMUSG00000040690.15) -23687 ENSMUSG00000028779.16 ENSMUSG00000028779 ENSMUST00000030563 Pef1 protein_coding Interval_10362 chr1 169968780 169969681 + 0 NA promoter-TSS (ENSMUSG00000026675.12) protein_coding-promoter-TSS (ENSMUSG00000026675.12) -222 ENSMUSG00000097503.2 ENSMUSG00000097503 ENSMUST00000193930 3110045C21Rik antisense Interval_129823 chr5 122552549 122552770 + 0 NA intron (ENSMUSG00000029469.14, intron 4 of 4) protein_coding-intron (ENSMUSG00000029469.14, intron 18 of 18) 15445 ENSMUSG00000105815.1 ENSMUSG00000105815 ENSMUST00000197208 Gm43541 TEC Interval_116248 chr4 109045456 109045687 + 0 NA promoter-TSS (ENSMUSG00000053510.12) protein_coding-promoter-TSS (ENSMUSG00000053510.12) 21365 ENSMUSG00000053510.12 ENSMUSG00000053510 ENSMUST00000125063 Nrd1 protein_coding Interval_145395 chr7 34459882 34460607 + 0 NA intron (ENSMUSG00000085124.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000085124.1, intron 1 of 2) 22107 ENSMUSG00000085124.1 ENSMUSG00000085124 ENSMUST00000140298 Gm12766 lincRNA Interval_130328 chr5 125790357 125790638 + 0 NA exon (ENSMUSG00000070498.3, exon 9 of 9) protein_coding-exon (ENSMUSG00000070498.3, exon 9 of 9) 58243 ENSMUSG00000091970.3 ENSMUSG00000091970 ENSMUST00000164138 Gm4868 processed_pseudogene Interval_97955 chr2 146098937 146099849 + 0 NA intron (ENSMUSG00000037143.17, intron 3 of 5) protein_coding-intron (ENSMUSG00000037143.17, intron 3 of 6) -115220 ENSMUSG00000037143.17 ENSMUSG00000037143 ENSMUST00000167179 Cfap61 protein_coding Interval_138529 chr6 88937451 88938701 + 0 NA Intergenic Intergenic -12607 ENSMUSG00000055403.13 ENSMUSG00000055403 ENSMUST00000153981 4933427D06Rik lincRNA Interval_71273 chr17 21801109 21801907 + 0 NA exon (ENSMUSG00000049202.5, exon 1 of 3) pseudogene-exon (ENSMUSG00000049202.5, exon 1 of 3) 150 ENSMUSG00000049202.5 ENSMUSG00000049202 ENSMUST00000057521 4930515G13Rik pseudogene Interval_126742 chr5 92467648 92468396 + 0 NA intron (ENSMUSG00000029426.8, intron 2 of 11) protein_coding-intron (ENSMUSG00000029426.8, intron 2 of 11) 9465 ENSMUSG00000099160.1 ENSMUSG00000099160 ENSMUST00000184064 Mir6415 miRNA Interval_44085 chr13 40782194 40782429 + 0 NA Intergenic Intergenic 4271 ENSMUSG00000090475.1 ENSMUSG00000090475 ENSMUST00000164699 Gm6245 processed_pseudogene Interval_76524 chr17 80756030 80756428 + 0 NA Intergenic Intergenic 28098 ENSMUSG00000054957.5 ENSMUSG00000054957 ENSMUST00000068277 Gm9959 pseudogene Interval_41844 chr13 3300248 3300488 + 0 NA TTS (ENSMUSG00000114003.1) processed_pseudogene-TTS (ENSMUSG00000114003.1) 1481 ENSMUSG00000114003.1 ENSMUSG00000114003 ENSMUST00000221154 Gm9616 processed_pseudogene Interval_29294 chr11 82745644 82747266 + 0 NA promoter-TSS (ENSMUSG00000081828.1) processed_pseudogene-promoter-TSS (ENSMUSG00000081828.1) -250 ENSMUSG00000081828.1 ENSMUSG00000081828 ENSMUST00000120047 Gm11420 processed_pseudogene Interval_56572 chr14 120405516 120405773 + 0 NA TTS (ENSMUSG00000022139.17) protein_coding-TTS (ENSMUSG00000022139.17) -16659 ENSMUSG00000097903.2 ENSMUSG00000097903 ENSMUST00000181685 Gm26679 antisense Interval_113758 chr4 58404572 58404778 + 0 NA Intergenic Intergenic 36423 ENSMUSG00000093293.1 ENSMUSG00000093293 ENSMUST00000175552 Mir3095 miRNA Interval_138342 chr6 87411744 87412284 + 0 NA Intergenic Intergenic -16980 ENSMUSG00000030046.6 ENSMUSG00000030046 ENSMUST00000032125 Bmp10 protein_coding Interval_16987 chr10 70294129 70294571 + 0 NA Intergenic Intergenic -6174 ENSMUSG00000052426.4 ENSMUSG00000052426 ENSMUST00000064271 Gm9877 pseudogene Interval_58016 chr15 26180027 26180728 + 0 NA Intergenic Intergenic -117939 ENSMUSG00000115335.1 ENSMUSG00000115335 ENSMUST00000227975 Gm41279 lincRNA Interval_131646 chr5 139056478 139056889 + 0 NA intron (ENSMUSG00000025855.13, intron 5 of 6) protein_coding-intron (ENSMUSG00000025855.13, intron 6 of 10) 61627 ENSMUSG00000075585.3 ENSMUSG00000075585 ENSMUST00000187923 6330403L08Rik antisense Interval_58040 chr15 27129812 27130196 + 0 NA Intergenic Intergenic -68138 ENSMUSG00000088191.1 ENSMUSG00000088191 ENSMUST00000157566 Gm23903 snoRNA Interval_70207 chr17 6730700 6731082 + 0 NA intron (ENSMUSG00000041831.17, intron 4 of 8) protein_coding-intron (ENSMUSG00000041831.17, intron 11 of 15) 11930 ENSMUSG00000052397.8 ENSMUSG00000052397 ENSMUST00000131131 Ezr protein_coding Interval_3065 chr1 52823074 52823774 + 0 NA Intergenic Intergenic -21505 ENSMUSG00000041426.12 ENSMUSG00000041426 ENSMUST00000162609 Hibch protein_coding Interval_127979 chr5 110041354 110041806 + 0 NA Intergenic Intergenic 30933 ENSMUSG00000090963.2 ENSMUSG00000090963 ENSMUST00000167969 Gm17655 protein_coding Interval_151812 chr7 126813416 126813681 + 0 NA promoter-TSS (ENSMUSG00000058966.13) protein_coding-promoter-TSS (ENSMUSG00000058966.13) -4440 ENSMUSG00000114515.2 ENSMUSG00000114515 ENSMUST00000207534 Aldoa protein_coding Interval_91440 chr2 38886935 38887815 + 0 NA intron (ENSMUSG00000063972.13, intron 1 of 5) protein_coding-intron (ENSMUSG00000063972.13, intron 1 of 10) 25212 ENSMUSG00000107468.1 ENSMUSG00000107468 ENSMUST00000204297 5730507A11Rik TEC Interval_110501 chr3 159875980 159876177 + 0 NA exon (ENSMUSG00000105990.1, exon 1 of 1) TEC-exon (ENSMUSG00000105990.1, exon 1 of 1) 232 ENSMUSG00000105990.1 ENSMUSG00000105990 ENSMUST00000199465 Gm43307 TEC Interval_68648 chr16 83261773 83262725 + 0 NA Intergenic Intergenic 109484 ENSMUSG00000071475.3 ENSMUSG00000071475 ENSMUST00000095940 Rpl21-ps5 processed_pseudogene Interval_160155 chr8 106782473 106784037 + 0 NA intron (ENSMUSG00000041949.6, intron 15 of 17) protein_coding-intron (ENSMUSG00000041949.6, intron 15 of 17) -87581 ENSMUSG00000031910.14 ENSMUSG00000031910 ENSMUST00000175987 Has3 protein_coding Interval_68912 chr16 88524552 88525124 + 0 NA Intergenic Intergenic -17860 ENSMUSG00000055811.2 ENSMUSG00000055811 ENSMUST00000069549 Cldn17 protein_coding Interval_77394 chr17 88419471 88419818 + 0 NA Intergenic Intergenic -21091 ENSMUSG00000034998.18 ENSMUSG00000034998 ENSMUST00000141052 Foxn2 protein_coding Interval_37901 chr12 72939402 72940668 + 0 NA promoter-TSS (ENSMUSG00000021098.14) protein_coding-promoter-TSS (ENSMUSG00000021098.14) 143 ENSMUSG00000021099.6 ENSMUSG00000021099 ENSMUST00000021519 Six6 protein_coding Interval_16069 chr10 60471631 60472586 + 0 NA intron (ENSMUSG00000012819.15, intron 10 of 65) protein_coding-intron (ENSMUSG00000012819.15, intron 10 of 66) 72204 ENSMUSG00000090439.3 ENSMUSG00000090439 ENSMUST00000218360 Gm17455 protein_coding Interval_129169 chr5 117958225 117959242 + 0 NA exon (ENSMUSG00000029361.18, exon 29 of 29) protein_coding-exon (ENSMUSG00000029361.18, exon 29 of 29) 17827 ENSMUSG00000088085.1 ENSMUSG00000088085 ENSMUST00000157460 Gm25343 snRNA Interval_90894 chr2 33308768 33309631 + 0 NA intron (ENSMUSG00000038831.16, intron 3 of 16) protein_coding-intron (ENSMUSG00000038831.16, intron 3 of 16) -13972 ENSMUSG00000082844.1 ENSMUSG00000082844 ENSMUST00000120467 Gm13537 processed_pseudogene Interval_125534 chr5 69340101 69342149 + 0 NA TTS (ENSMUSG00000093129.1) miRNA-TTS (ENSMUSG00000093129.1) 342 ENSMUSG00000093129.1 ENSMUSG00000093129 ENSMUST00000175388 Gm24368 miRNA Interval_23383 chr11 22077383 22077859 + 0 NA intron (ENSMUSG00000042302.14, intron 15 of 24) protein_coding-intron (ENSMUSG00000042302.14, intron 14 of 23) -75911 ENSMUSG00000005917.15 ENSMUSG00000005917 ENSMUST00000147486 Otx1 protein_coding Interval_99067 chr2 156982378 156983404 + 0 NA intron (ENSMUSG00000027634.14, intron 1 of 2) protein_coding-intron (ENSMUSG00000027634.14, intron 1 of 16) 9036 ENSMUSG00000027634.14 ENSMUSG00000027634 ENSMUST00000132748 Ndrg3 protein_coding Interval_92053 chr2 52895118 52895388 + 0 NA intron (ENSMUSG00000036053.17, intron 1 of 26) protein_coding-intron (ENSMUSG00000036053.17, intron 1 of 26) 37393 ENSMUSG00000036053.17 ENSMUSG00000036053 ENSMUST00000050719 Fmnl2 protein_coding Interval_22734 chr11 14139247 14139538 + 0 NA intron (ENSMUSG00000085452.1, intron 2 of 3) lincRNA-intron (ENSMUSG00000085452.1, intron 2 of 3) -22687 ENSMUSG00000081631.1 ENSMUSG00000081631 ENSMUST00000121451 Gm12005 processed_pseudogene Interval_101749 chr3 9363743 9364306 + 0 NA Intergenic Intergenic -38151 ENSMUSG00000088229.1 ENSMUSG00000088229 ENSMUST00000157604 Gm22604 misc_RNA Interval_71617 chr17 24880942 24882111 + 0 NA TTS (ENSMUSG00000046070.9) protein_coding-TTS (ENSMUSG00000046070.9) 3870 ENSMUSG00000046070.9 ENSMUSG00000046070 ENSMUST00000234754 Igfals protein_coding Interval_157654 chr8 72104995 72105739 + 0 NA Intergenic Intergenic -1673 ENSMUSG00000046881.7 ENSMUSG00000046881 ENSMUST00000209675 Olfr374 protein_coding Interval_97649 chr2 142000162 142000350 + 0 NA intron (ENSMUSG00000068205.14, intron 3 of 13) protein_coding-intron (ENSMUSG00000068205.14, intron 8 of 17) 161467 ENSMUSG00000082412.1 ENSMUSG00000082412 ENSMUST00000119675 Fau-ps1 processed_pseudogene Interval_167858 chr9 73112451 73114434 + 0 NA promoter-TSS (ENSMUSG00000032215.15) protein_coding-promoter-TSS (ENSMUSG00000032215.15) 16 ENSMUSG00000032215.15 ENSMUSG00000032215 ENSMUST00000165177 Rsl24d1 protein_coding Interval_65618 chr16 24235376 24235575 + 0 NA intron (ENSMUSG00000115869.1, intron 1 of 3) transcribed_processed_pseudogene-intron (ENSMUSG00000115852.2, intron 2 of 3) -18966 ENSMUSG00000115869.1 ENSMUSG00000115869 ENSMUST00000230869 Gm31814 sense_intronic Interval_53619 chr14 60148859 60149267 + 0 NA intron (ENSMUSG00000021983.16, intron 1 of 6) protein_coding-intron (ENSMUSG00000021983.16, intron 1 of 6) -5088 ENSMUSG00000072068.4 ENSMUSG00000072068 ENSMUST00000096813 Gm16261 processed_pseudogene Interval_123003 chr5 28345383 28346972 + 0 NA intron (ENSMUSG00000048271.14, intron 6 of 18) protein_coding-intron (ENSMUSG00000048271.14, intron 6 of 6) -47878 ENSMUSG00000048271.14 ENSMUSG00000048271 ENSMUST00000133313 Rbm33 protein_coding Interval_164819 chr9 42195270 42196802 + 0 NA intron (ENSMUSG00000111767.1, intron 3 of 6) lincRNA-intron (ENSMUSG00000111767.1, intron 2 of 4) 13177 ENSMUSG00000111767.1 ENSMUSG00000111767 ENSMUST00000216643 4930546K05Rik lincRNA Interval_83897 chr19 5433030 5435016 + 0 NA Intergenic Intergenic -1877 ENSMUSG00000088909.1 ENSMUSG00000088909 ENSMUST00000158284 Gm50111 snoRNA Interval_109854 chr3 148977275 148978040 + 0 NA intron (ENSMUSG00000028184.12, intron 1 of 19) protein_coding-intron (ENSMUSG00000028184.12, intron 1 of 2) -11495 ENSMUSG00000104786.1 ENSMUSG00000104786 ENSMUST00000196445 Gm43573 antisense Interval_164258 chr9 34628936 34629148 + 0 NA intron (ENSMUSG00000032036.15, intron 1 of 15) protein_coding-intron (ENSMUSG00000032036.15, intron 1 of 16) 107287 ENSMUSG00000103552.1 ENSMUSG00000103552 ENSMUST00000194358 Gm38217 TEC Interval_160339 chr8 108577320 108577822 + 0 NA intron (ENSMUSG00000110613.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000110613.1, intron 1 of 1) 7024 ENSMUSG00000110613.1 ENSMUSG00000110613 ENSMUST00000211953 Lncbate1 lincRNA Interval_100545 chr2 170045735 170047200 + 0 NA intron (ENSMUSG00000047907.11, intron 1 of 1) protein_coding-intron (ENSMUSG00000047907.11, intron 1 of 1) -83280 ENSMUSG00000103935.1 ENSMUSG00000103935 ENSMUST00000194482 AY702102 TEC Interval_128461 chr5 113447074 113447841 + 0 NA Intergenic Intergenic 90163 ENSMUSG00000053873.1 ENSMUSG00000053873 ENSMUST00000066573 Aym1 protein_coding Interval_122153 chr5 18345814 18346308 + 0 NA intron (ENSMUSG00000057614.6, intron 1 of 7) protein_coding-intron (ENSMUSG00000057614.6, intron 1 of 7) -4287 ENSMUSG00000104540.1 ENSMUSG00000104540 ENSMUST00000198905 Gm3527 processed_pseudogene Interval_59454 chr15 53260186 53260503 + 0 NA intron (ENSMUSG00000061731.9, intron 1 of 10) protein_coding-intron (ENSMUSG00000061731.9, intron 1 of 10) -123575 ENSMUSG00000087805.2 ENSMUSG00000087805 ENSMUST00000157180 Gm27926 snRNA Interval_17735 chr10 79811833 79812685 + 0 NA intron (ENSMUSG00000035863.14, intron 5 of 6) protein_coding-intron (ENSMUSG00000035863.14, intron 5 of 8) -2411 ENSMUSG00000035863.14 ENSMUSG00000035863 ENSMUST00000220365 Palm protein_coding Interval_120307 chr4 145332210 145333036 + 0 NA Intergenic Intergenic -17459 ENSMUSG00000028602.12 ENSMUSG00000028602 ENSMUST00000123027 Tnfrsf8 protein_coding Interval_77267 chr17 87671843 87673024 + 0 NA promoter-TSS (ENSMUSG00000024151.13) protein_coding-promoter-TSS (ENSMUSG00000024151.13) -24108 ENSMUSG00000024151.13 ENSMUSG00000024151 ENSMUST00000174703 Msh2 protein_coding Interval_73488 chr17 37973764 37975131 + 0 NA promoter-TSS (ENSMUSG00000092213.1) processed_pseudogene-promoter-TSS (ENSMUSG00000092213.1) -197 ENSMUSG00000092213.1 ENSMUSG00000092213 ENSMUST00000173947 Gm18522 processed_pseudogene Interval_106647 chr3 98078439 98078655 + 0 NA intron (ENSMUSG00000027878.11, intron 4 of 7) protein_coding-intron (ENSMUSG00000027878.11, intron 4 of 33) -43041 ENSMUSG00000106427.1 ENSMUSG00000106427 ENSMUST00000200084 Gm42820 TEC Interval_31005 chr11 97673296 97673709 + 0 NA TTS (ENSMUSG00000038437.11) protein_coding-TTS (ENSMUSG00000038437.11) -3558 ENSMUSG00000098881.1 ENSMUSG00000098881 ENSMUST00000184494 Mir6927 miRNA Interval_38418 chr12 78906622 78907253 + 0 NA promoter-TSS (ENSMUSG00000021118.7) protein_coding-promoter-TSS (ENSMUSG00000021118.7) 27 ENSMUSG00000021118.7 ENSMUSG00000021118 ENSMUST00000021544 Plek2 protein_coding Interval_13741 chr10 21690886 21691566 + 0 NA exon (ENSMUSG00000056716.10, exon 1 of 3) lincRNA-exon (ENSMUSG00000056716.10, exon 1 of 3) 4815 ENSMUSG00000056716.10 ENSMUSG00000056716 ENSMUST00000071008 Gm5420 lincRNA Interval_8297 chr1 136989366 136989994 + 0 NA TTS (ENSMUSG00000088970.1) snRNA-TTS (ENSMUSG00000088970.1) 590 ENSMUSG00000088970.1 ENSMUSG00000088970 ENSMUST00000158345 Gm23763 snRNA Interval_142427 chr6 142084096 142084406 + 0 NA Intergenic Intergenic -26205 ENSMUSG00000092488.1 ENSMUSG00000092488 ENSMUST00000174516 Gm18159 processed_pseudogene Interval_4828 chr1 79874810 79875573 + 0 NA Intergenic Intergenic 48235 ENSMUSG00000067106.6 ENSMUSG00000067106 ENSMUST00000165691 Gm5529 processed_pseudogene Interval_56172 chr14 110482002 110482312 + 0 NA Intergenic Intergenic -20486 ENSMUSG00000115336.1 ENSMUSG00000115336 ENSMUST00000228763 Gm48980 processed_pseudogene Interval_65318 chr16 21485572 21486439 + 0 NA intron (ENSMUSG00000033653.18, intron 6 of 31) protein_coding-intron (ENSMUSG00000033653.18, intron 20 of 43) -47107 ENSMUSG00000033653.18 ENSMUSG00000033653 ENSMUST00000127903 Vps8 protein_coding Interval_110666 chr4 5874091 5874352 + 0 NA intron (ENSMUSG00000049119.14, intron 3 of 4) protein_coding-intron (ENSMUSG00000049119.14, intron 3 of 4) -18734 ENSMUSG00000083232.1 ENSMUSG00000083232 ENSMUST00000120208 Gm11796 processed_pseudogene Interval_153382 chr7 144234989 144235257 + 0 NA intron (ENSMUSG00000037541.22, intron 13 of 17) protein_coding-intron (ENSMUSG00000037541.22, intron 4 of 15) -3602 ENSMUSG00000037541.22 ENSMUSG00000037541 ENSMUST00000136979 Shank2 protein_coding Interval_150003 chr7 104507792 104508398 + 0 NA promoter-TSS (ENSMUSG00000057596.13) protein_coding-promoter-TSS (ENSMUSG00000057596.13) -5946 ENSMUSG00000082154.1 ENSMUSG00000082154 ENSMUST00000117815 Gm16464 processed_pseudogene Interval_102668 chr3 29241294 29241569 + 0 NA intron (ENSMUSG00000063600.14, intron 4 of 5) protein_coding-intron (ENSMUSG00000063600.14, intron 4 of 12) 21544 ENSMUSG00000102579.1 ENSMUSG00000102579 ENSMUST00000195304 Gm37965 TEC Interval_109182 chr3 137737309 137737717 + 0 NA Intergenic Intergenic 21855 ENSMUSG00000064460.1 ENSMUSG00000064460 ENSMUST00000082526 Gm25080 snRNA Interval_99868 chr2 165397928 165398607 + 0 NA intron (ENSMUSG00000027670.4, intron 1 of 2) protein_coding-intron (ENSMUSG00000027670.4, intron 1 of 2) 2138 ENSMUSG00000027670.4 ENSMUSG00000027670 ENSMUST00000029213 Ocstamp protein_coding Interval_3875 chr1 64087851 64089408 + 0 NA intron (ENSMUSG00000086836.1, intron 3 of 3) protein_coding-intron (ENSMUSG00000025959.13, intron 2 of 3) 9975 ENSMUSG00000086836.1 ENSMUSG00000086836 ENSMUST00000149820 Gm13748 antisense Interval_128705 chr5 114823009 114824563 + 0 NA promoter-TSS (ENSMUSG00000072694.8) protein_coding-promoter-TSS (ENSMUSG00000072694.8) -318 ENSMUSG00000072694.8 ENSMUSG00000072694 ENSMUST00000100850 1500011B03Rik protein_coding Interval_88767 chr2 10420847 10421549 + 0 NA intron (ENSMUSG00000061186.15, intron 6 of 22) protein_coding-intron (ENSMUSG00000061186.15, intron 5 of 22) -44089 ENSMUSG00000080500.1 ENSMUSG00000080500 ENSMUST00000116850 Gm22072 miRNA Interval_142700 chr6 145055169 145056274 + 0 NA promoter-TSS (ENSMUSG00000086643.1) antisense-promoter-TSS (ENSMUSG00000086643.1) -668 ENSMUSG00000086643.1 ENSMUSG00000086643 ENSMUST00000141440 Gm15687 antisense Interval_77223 chr17 87445549 87447678 + 0 NA intron (ENSMUSG00000036438.14, intron 1 of 3) protein_coding-intron (ENSMUSG00000036438.14, intron 1 of 5) 322 ENSMUSG00000036438.14 ENSMUSG00000036438 ENSMUST00000238271 Calm2 protein_coding Interval_121431 chr4 155748938 155749224 + 0 NA exon (ENSMUSG00000029036.18, exon 1 of 2) protein_coding-exon (ENSMUSG00000029036.18, exon 1 of 2) 11847 ENSMUSG00000029036.18 ENSMUSG00000029036 ENSMUST00000134317 Atad3a protein_coding Interval_80251 chr18 38557923 38558457 + 0 NA Intergenic Intergenic -24660 ENSMUSG00000118296.1 ENSMUSG00000118296 ENSMUST00000236625 Gm19100 processed_pseudogene Interval_148541 chr7 82269876 82270850 + 0 NA promoter-TSS (ENSMUSG00000030638.13) protein_coding-promoter-TSS (ENSMUSG00000030638.13) -71905 ENSMUSG00000109479.1 ENSMUSG00000109479 ENSMUST00000208587 Gm44919 TEC Interval_7461 chr1 131546691 131549219 + 0 NA Intergenic Intergenic 20052 ENSMUSG00000055184.4 ENSMUSG00000055184 ENSMUST00000068613 Fam72a protein_coding Interval_104582 chr3 68513103 68514955 + 0 NA intron (ENSMUSG00000027777.15, intron 2 of 5) protein_coding-intron (ENSMUSG00000027777.15, intron 2 of 7) 20538 ENSMUSG00000027777.15 ENSMUSG00000027777 ENSMUST00000182360 Schip1 protein_coding Interval_68334 chr16 73404142 73404502 + 0 NA intron (ENSMUSG00000116976.1, intron 3 of 4) processed_transcript-intron (ENSMUSG00000116976.1, intron 2 of 4) 18637 ENSMUSG00000064830.1 ENSMUSG00000064830 ENSMUST00000082896 Gm25699 snRNA Interval_105690 chr3 88585630 88587533 + 0 NA intron (ENSMUSG00000041355.13, intron 4 of 5) protein_coding-intron (ENSMUSG00000041355.13, intron 3 of 4) 6973 ENSMUSG00000041355.13 ENSMUSG00000041355 ENSMUST00000035785 Ssr2 protein_coding Interval_41178 chr12 111648181 111648976 + 0 NA intron (ENSMUSG00000007411.16, intron 15 of 15) protein_coding-intron (ENSMUSG00000007411.16, intron 15 of 15) 22966 ENSMUSG00000001270.9 ENSMUSG00000001270 ENSMUST00000222513 Ckb protein_coding Interval_158442 chr8 83751099 83751662 + 0 NA Intergenic Intergenic -1538 ENSMUSG00000084682.1 ENSMUSG00000084682 ENSMUST00000122733 Gm22024 misc_RNA Interval_101054 chr2 174673759 174674622 + 0 NA intron (ENSMUSG00000050600.5, intron 3 of 4) protein_coding-intron (ENSMUSG00000050600.5, intron 3 of 4) 30656 ENSMUSG00000050600.5 ENSMUSG00000050600 ENSMUST00000059452 Zfp831 protein_coding Interval_75825 chr17 71660577 71661196 + 0 NA Intergenic Intergenic 18190 ENSMUSG00000041057.10 ENSMUSG00000041057 ENSMUST00000234339 Wdr43 protein_coding Interval_26687 chr11 59723181 59723487 + 0 NA intron (ENSMUSG00000005417.17, intron 3 of 3) protein_coding-intron (ENSMUSG00000005417.17, intron 3 of 22) 16820 ENSMUSG00000086330.7 ENSMUSG00000086330 ENSMUST00000153431 1700007J10Rik processed_transcript Interval_36641 chr12 51703890 51707095 + 0 NA intron (ENSMUSG00000020955.9, intron 1 of 5) protein_coding-intron (ENSMUSG00000020955.9, intron 1 of 5) 14459 ENSMUSG00000020955.9 ENSMUSG00000020955 ENSMUST00000021338 Ap4s1 protein_coding Interval_54470 chr14 70043787 70044420 + 0 NA intron (ENSMUSG00000114446.1, intron 1 of 2) protein_coding-intron (ENSMUSG00000022085.4, intron 4 of 6) 13264 ENSMUSG00000114446.1 ENSMUSG00000114446 ENSMUST00000224990 Gm33524 antisense Interval_21049 chr10 125388158 125389899 + 0 NA exon (ENSMUSG00000111943.1, exon 1 of 1) TEC-exon (ENSMUSG00000111943.1, exon 1 of 1) 489 ENSMUSG00000111943.1 ENSMUSG00000111943 ENSMUST00000220021 Gm47862 TEC Interval_132759 chr5 147676147 147678139 + 0 NA intron (ENSMUSG00000029648.13, intron 7 of 12) protein_coding-intron (ENSMUSG00000029648.13, intron 7 of 11) -30336 ENSMUSG00000029648.13 ENSMUSG00000029648 ENSMUST00000031652 Flt1 protein_coding Interval_76449 chr17 80276461 80276659 + 0 NA intron (ENSMUSG00000035051.15, intron 2 of 22) protein_coding-intron (ENSMUSG00000035051.15, intron 2 of 22) -8718 ENSMUSG00000035051.15 ENSMUSG00000035051 ENSMUST00000234703 Dhx57 protein_coding Interval_73877 chr17 45152125 45154009 + 0 NA Intergenic Intergenic 5830 ENSMUSG00000117044.1 ENSMUSG00000117044 ENSMUST00000233532 Gm35097 lincRNA Interval_86124 chr19 36887389 36889172 + 0 NA TTS (ENSMUSG00000024811.11) protein_coding-TTS (ENSMUSG00000024811.11) 31319 ENSMUSG00000047632.11 ENSMUSG00000047632 ENSMUST00000057337 Fgfbp3 protein_coding Interval_21414 chr10 128458315 128460249 + 0 NA promoter-TSS (ENSMUSG00000025369.15) protein_coding-promoter-TSS (ENSMUSG00000025369.15) -374 ENSMUSG00000025369.15 ENSMUSG00000025369 ENSMUST00000217751 Smarcc2 protein_coding Interval_29940 chr11 87915613 87915858 + 0 NA promoter-TSS (ENSMUSG00000060787.9) protein_coding-promoter-TSS (ENSMUSG00000060787.9) 5227 ENSMUSG00000060787.9 ENSMUSG00000060787 ENSMUST00000074874 Olfr464 protein_coding Interval_41066 chr12 110925847 110926274 + 0 NA intron (ENSMUSG00000021275.16, intron 5 of 10) protein_coding-intron (ENSMUSG00000021275.16, intron 5 of 19) 27946 ENSMUSG00000096942.1 ENSMUSG00000096942 ENSMUST00000181233 Rps19-ps6 processed_pseudogene Interval_143327 chr7 5432981 5433207 + 0 NA Intergenic Intergenic 18358 ENSMUSG00000109577.1 ENSMUSG00000109577 ENSMUST00000209136 Gm44543 processed_pseudogene Interval_61503 chr15 82026304 82026865 + 0 NA TTS (ENSMUSG00000022471.14) protein_coding-TTS (ENSMUSG00000022471.14) -1548 ENSMUSG00000022471.14 ENSMUSG00000022471 ENSMUST00000164775 Xrcc6 protein_coding Interval_24547 chr11 34276042 34276801 + 0 NA intron (ENSMUSG00000020143.15, intron 33 of 34) protein_coding-intron (ENSMUSG00000020143.15, intron 33 of 51) -23286 ENSMUSG00000087122.1 ENSMUSG00000087122 ENSMUST00000147359 4930403D09Rik antisense Interval_89669 chr2 24405279 24406293 + 0 NA exon (ENSMUSG00000026979.16, exon 16 of 17) protein_coding-exon (ENSMUSG00000026979.16, exon 16 of 17) 19169 ENSMUSG00000026979.16 ENSMUSG00000026979 ENSMUST00000132924 Psd4 protein_coding Interval_10515 chr1 171427265 171427920 + 0 NA Intergenic Intergenic 7873 ENSMUSG00000103711.1 ENSMUSG00000103711 ENSMUST00000194029 Tstd1 protein_coding Interval_83377 chr18 84701803 84703069 + 0 NA Intergenic Intergenic -10140 ENSMUSG00000118152.1 ENSMUSG00000118152 ENSMUST00000237194 Gm2390 processed_pseudogene Interval_43428 chr13 30728521 30728761 + 0 NA Intergenic Intergenic -3136 ENSMUSG00000081905.1 ENSMUSG00000081905 ENSMUST00000120583 Gm11370 processed_pseudogene Interval_13628 chr10 20272107 20273820 + 0 NA intron (ENSMUSG00000111447.1, intron 2 of 3) protein_coding-intron (ENSMUSG00000019996.17, intron 11 of 17) 13668 ENSMUSG00000111447.1 ENSMUSG00000111447 ENSMUST00000215889 Gm48249 antisense Interval_17682 chr10 79399759 79401696 + 0 NA Intergenic Intergenic 17178 ENSMUSG00000112907.1 ENSMUSG00000112907 ENSMUST00000217947 Gm47015 lincRNA Interval_164069 chr9 31273128 31274710 + 0 NA promoter-TSS (ENSMUSG00000091003.2) processed_pseudogene-promoter-TSS (ENSMUSG00000091003.2) -902 ENSMUSG00000091003.2 ENSMUSG00000091003 ENSMUST00000164658 Gm7244 processed_pseudogene Interval_61881 chr15 84897773 84898146 + 0 NA Intergenic Intergenic -8683 ENSMUSG00000116491.1 ENSMUSG00000116491 ENSMUST00000230387 4930513L16Rik lincRNA Interval_134061 chr6 18467848 18469018 + 0 NA intron (ENSMUSG00000000416.16, intron 2 of 22) protein_coding-intron (ENSMUSG00000000416.16, intron 2 of 22) -19093 ENSMUSG00000093271.1 ENSMUSG00000093271 ENSMUST00000175530 Gm26233 miRNA Interval_42464 chr13 13816683 13817227 + 0 NA intron (ENSMUSG00000021303.14, intron 3 of 3) protein_coding-intron (ENSMUSG00000021303.14, intron 3 of 3) -2324 ENSMUSG00000021303.14 ENSMUSG00000021303 ENSMUST00000220727 Gng4 protein_coding Interval_34617 chr12 8031918 8032633 + 0 NA Intergenic Intergenic 54627 ENSMUSG00000020609.14 ENSMUSG00000020609 ENSMUST00000171239 Apob protein_coding Interval_1858 chr1 34174729 34175697 + 0 NA TTS (ENSMUSG00000026131.20) protein_coding-TTS (ENSMUSG00000026131.20) 3233 ENSMUSG00000096992.3 ENSMUSG00000096992 ENSMUST00000187268 Gm26788 processed_transcript Interval_34214 chr11 121326131 121326695 + 0 NA TTS (ENSMUSG00000025173.13) protein_coding-TTS (ENSMUSG00000025173.13) 14775 ENSMUSG00000025173.13 ENSMUSG00000025173 ENSMUST00000127373 Wdr45b protein_coding Interval_149466 chr7 98824042 98824903 + 0 NA Intergenic Intergenic -23334 ENSMUSG00000015957.12 ENSMUSG00000015957 ENSMUST00000208062 Wnt11 protein_coding Interval_43551 chr13 33079530 33080879 + 0 NA intron (ENSMUSG00000051029.8, intron 1 of 2) protein_coding-intron (ENSMUSG00000051029.8, intron 1 of 2) 1629 ENSMUSG00000051029.8 ENSMUSG00000051029 ENSMUST00000016951 Serpinb1b protein_coding Interval_108715 chr3 130689820 130690071 + 0 NA Intergenic Intergenic 16004 ENSMUSG00000105466.1 ENSMUSG00000105466 ENSMUST00000197053 Gm42998 TEC Interval_106506 chr3 96757414 96758203 + 0 NA intron (ENSMUSG00000028098.13, intron 3 of 5) protein_coding-intron (ENSMUSG00000028098.13, intron 2 of 8) -26517 ENSMUSG00000105976.1 ENSMUSG00000105976 ENSMUST00000197286 Gm42782 TEC Interval_25035 chr11 43418147 43418482 + 0 NA Intergenic Intergenic 7667 ENSMUSG00000020415.16 ENSMUSG00000020415 ENSMUST00000148130 Pttg1 protein_coding Interval_132462 chr5 145113685 145115074 + 0 NA promoter-TSS (ENSMUSG00000029622.16) protein_coding-promoter-TSS (ENSMUSG00000029622.16) 67 ENSMUSG00000029622.16 ENSMUSG00000029622 ENSMUST00000144375 Arpc1b protein_coding Interval_136927 chr6 64660361 64662420 + 0 NA intron (ENSMUSG00000071424.10, intron 14 of 15) protein_coding-intron (ENSMUSG00000071424.10, intron 14 of 15) -1798 ENSMUSG00000071424.10 ENSMUSG00000071424 ENSMUST00000210324 Grid2 protein_coding Interval_171781 chr9 121044801 121046393 + 0 NA promoter-TSS (ENSMUSG00000040936.15) protein_coding-promoter-TSS (ENSMUSG00000040936.15) -85090 ENSMUSG00000040936.15 ENSMUSG00000040936 ENSMUST00000164969 Ulk4 protein_coding Interval_108151 chr3 122012537 122013414 + 0 NA intron (ENSMUSG00000039831.16, intron 11 of 11) protein_coding-intron (ENSMUSG00000039831.16, intron 22 of 22) 9986 ENSMUSG00000039831.16 ENSMUSG00000039831 ENSMUST00000199550 Arhgap29 protein_coding Interval_122830 chr5 25870606 25870806 + 0 NA Intergenic Intergenic 55584 ENSMUSG00000105052.4 ENSMUSG00000105052 ENSMUST00000167847 Gm21655 processed_transcript Interval_106432 chr3 96175143 96175769 + 0 NA promoter-TSS (ENSMUSG00000084686.1) snoRNA-promoter-TSS (ENSMUSG00000084686.1) -905 ENSMUSG00000084686.1 ENSMUSG00000084686 ENSMUST00000122737 Gm22027 snoRNA Interval_70111 chr17 5404944 5405315 + 0 NA intron (ENSMUSG00000101133.1, intron 1 of 1) antisense-intron (ENSMUSG00000101133.1, intron 1 of 1) 13638 ENSMUSG00000101959.1 ENSMUSG00000101959 ENSMUST00000189788 Ldhal6b protein_coding Interval_38219 chr12 76434403 76435857 + 0 NA promoter-TSS (ENSMUSG00000052221.8) protein_coding-promoter-TSS (ENSMUSG00000052221.8) -14568 ENSMUSG00000073000.3 ENSMUSG00000073000 ENSMUST00000220043 Gm10451 lincRNA Interval_8209 chr1 136521252 136521746 + 0 NA intron (ENSMUSG00000041498.13, intron 25 of 27) protein_coding-intron (ENSMUSG00000041498.13, intron 27 of 29) -2385 ENSMUSG00000101413.1 ENSMUSG00000101413 ENSMUST00000190220 Gm29485 processed_pseudogene Interval_80598 chr18 44519953 44520626 + 0 NA promoter-TSS (ENSMUSG00000071856.10) protein_coding-promoter-TSS (ENSMUSG00000071856.10) 139787 ENSMUSG00000024472.9 ENSMUSG00000024472 ENSMUST00000025350 Dcp2 protein_coding Interval_39214 chr12 85890827 85891103 + 0 NA intron (ENSMUSG00000012609.19, intron 12 of 31) protein_coding-intron (ENSMUSG00000012609.19, intron 13 of 33) -68715 ENSMUSG00000021252.11 ENSMUSG00000021252 ENSMUST00000142331 Erg28 protein_coding Interval_105480 chr3 86914216 86915615 + 0 NA intron (ENSMUSG00000028078.14, intron 1 of 15) protein_coding-intron (ENSMUSG00000028078.14, intron 1 of 15) 5420 ENSMUSG00000028078.14 ENSMUSG00000028078 ENSMUST00000194452 Dclk2 protein_coding Interval_16032 chr10 60218243 60219479 + 0 NA intron (ENSMUSG00000057337.13, intron 1 of 3) protein_coding-intron (ENSMUSG00000057337.13, intron 1 of 3) -7610 ENSMUSG00000077090.1 ENSMUSG00000077090 ENSMUST00000103902 Gm22117 miRNA Interval_106051 chr3 91958661 91959296 + 0 NA Intergenic Intergenic 51887 ENSMUSG00000077085.1 ENSMUSG00000077085 ENSMUST00000103897 Gm23697 miRNA Interval_70480 chr17 10514170 10515630 + 0 NA intron (ENSMUSG00000089941.1, intron 1 of 1) protein_coding-intron (ENSMUSG00000037196.6, intron 4 of 4) 18454 ENSMUSG00000089941.1 ENSMUSG00000089941 ENSMUST00000161091 Gm16168 antisense Interval_110431 chr3 158061020 158061413 + 0 NA intron (ENSMUSG00000063052.9, intron 9 of 12) protein_coding-intron (ENSMUSG00000063052.9, intron 11 of 14) 14896 ENSMUSG00000104597.1 ENSMUSG00000104597 ENSMUST00000200255 B230334C09Rik antisense Interval_60125 chr15 65925989 65927437 + 0 NA intron (ENSMUSG00000072511.3, intron 15 of 17) protein_coding-intron (ENSMUSG00000072511.3, intron 15 of 16) 2220 ENSMUSG00000092454.1 ENSMUSG00000092454 ENSMUST00000173338 Gm2991 processed_pseudogene Interval_14783 chr10 39800371 39800777 + 0 NA intron (ENSMUSG00000019841.15, intron 6 of 32) protein_coding-intron (ENSMUSG00000019841.15, intron 5 of 31) -47706 ENSMUSG00000081608.1 ENSMUSG00000081608 ENSMUST00000122161 Gm16210 processed_pseudogene Interval_96996 chr2 130361787 130363048 + 0 NA exon (ENSMUSG00000053552.14, exon 14 of 17) protein_coding-exon (ENSMUSG00000053552.14, exon 14 of 17) 22912 ENSMUSG00000083483.3 ENSMUSG00000083483 ENSMUST00000117531 Gm14044 processed_pseudogene Interval_91874 chr2 50897000 50897262 + 0 NA Intergenic Intergenic -12553 ENSMUSG00000083270.1 ENSMUSG00000083270 ENSMUST00000119159 Gm13498 processed_pseudogene Interval_85215 chr19 23866959 23867225 + 0 NA intron (ENSMUSG00000024897.9, intron 1 of 12) protein_coding-intron (ENSMUSG00000024897.9, intron 1 of 12) -37365 ENSMUSG00000024897.9 ENSMUSG00000024897 ENSMUST00000237688 Apba1 protein_coding Interval_136787 chr6 60311791 60312639 + 0 NA intron (ENSMUSG00000046764.8, intron 1 of 1) processed_transcript-intron (ENSMUSG00000046764.8, intron 1 of 1) 61423 ENSMUSG00000064515.1 ENSMUSG00000064515 ENSMUST00000082581 n-R5s162 rRNA Interval_173959 chrX 116674391 116674665 + 0 NA Intergenic Intergenic -6650 ENSMUSG00000082482.2 ENSMUSG00000082482 ENSMUST00000118616 H2ab2 protein_coding Interval_132793 chr5 147913203 147913898 + 0 NA Intergenic Intergenic -33681 ENSMUSG00000029650.10 ENSMUSG00000029650 ENSMUST00000138244 Slc46a3 protein_coding Interval_108225 chr3 122612043 122612298 + 0 NA intron (ENSMUSG00000039735.16, intron 1 of 14) protein_coding-intron (ENSMUSG00000039735.16, intron 1 of 13) 7545 ENSMUSG00000039735.16 ENSMUSG00000039735 ENSMUST00000162884 Fnbp1l protein_coding Interval_131714 chr5 139459809 139460932 + 0 NA intron (ENSMUSG00000053553.11, intron 1 of 3) protein_coding-intron (ENSMUSG00000053553.11, intron 1 of 4) 157 ENSMUSG00000053553.11 ENSMUSG00000053553 ENSMUST00000197512 3110082I17Rik protein_coding Interval_85812 chr19 32109523 32109947 + 0 NA Intergenic Intergenic -92931 ENSMUSG00000024887.10 ENSMUSG00000024887 ENSMUST00000235395 Asah2 protein_coding Interval_94889 chr2 100903102 100903928 + 0 NA Intergenic Intergenic -275472 ENSMUSG00000095203.1 ENSMUSG00000095203 ENSMUST00000118584 Gm13810 processed_pseudogene Interval_84786 chr19 16673300 16673530 + 0 NA intron (ENSMUSG00000046230.11, intron 45 of 73) protein_coding-intron (ENSMUSG00000046230.11, intron 45 of 71) -32797 ENSMUSG00000046230.11 ENSMUSG00000046230 ENSMUST00000225764 Vps13a protein_coding Interval_47538 chr13 87087371 87087620 + 0 NA Intergenic Intergenic 147099 ENSMUSG00000114856.1 ENSMUSG00000114856 ENSMUST00000224195 Gm47642 processed_pseudogene Interval_92357 chr2 59229448 59229743 + 0 NA promoter-TSS (ENSMUSG00000026991.20) protein_coding-promoter-TSS (ENSMUSG00000026991.20) 67668 ENSMUSG00000026991.20 ENSMUSG00000026991 ENSMUST00000124127 Pkp4 protein_coding Interval_129702 chr5 121867931 121868347 + 0 NA intron (ENSMUSG00000042589.18, intron 17 of 20) protein_coding-intron (ENSMUSG00000042589.18, intron 19 of 22) -2076 ENSMUSG00000042589.18 ENSMUSG00000042589 ENSMUST00000125267 Cux2 protein_coding Interval_96599 chr2 126264218 126264460 + 0 NA Intergenic Intergenic 5024 ENSMUSG00000089480.1 ENSMUSG00000089480 ENSMUST00000158855 Gm24739 misc_RNA Interval_98697 chr2 154378927 154379673 + 0 NA intron (ENSMUSG00000027488.12, intron 5 of 7) protein_coding-intron (ENSMUSG00000027488.12, intron 5 of 7) -24956 ENSMUSG00000027487.11 ENSMUSG00000027487 ENSMUST00000137918 Cdk5rap1 protein_coding Interval_40750 chr12 108135055 108135602 + 0 NA intron (ENSMUSG00000056770.15, intron 1 of 2) protein_coding-intron (ENSMUSG00000056770.15, intron 6 of 12) 27681 ENSMUSG00000056770.15 ENSMUSG00000056770 ENSMUST00000125916 Setd3 protein_coding Interval_47656 chr13 90868116 90870003 + 0 NA TTS (ENSMUSG00000114589.1) processed_pseudogene-TTS (ENSMUSG00000114589.1) 1453 ENSMUSG00000114589.1 ENSMUSG00000114589 ENSMUST00000224274 Gm18518 processed_pseudogene Interval_77419 chr17 88576870 88577512 + 0 NA exon (ENSMUSG00000034709.8, exon 17 of 22) protein_coding-exon (ENSMUSG00000034709.8, exon 17 of 22) 15074 ENSMUSG00000034709.8 ENSMUSG00000034709 ENSMUST00000185400 Ppp1r21 protein_coding Interval_160517 chr8 110225275 110225956 + 0 NA Intergenic Intergenic 9950 ENSMUSG00000046441.5 ENSMUSG00000046441 ENSMUST00000056972 Cmtr2 protein_coding Interval_67667 chr16 55838518 55839367 + 0 NA promoter-TSS (ENSMUSG00000035356.17) protein_coding-promoter-TSS (ENSMUSG00000035356.17) -20427 ENSMUSG00000035356.17 ENSMUSG00000035356 ENSMUST00000139373 Nfkbiz protein_coding Interval_76160 chr17 75770065 75770558 + 0 NA Intergenic Intergenic -63526 ENSMUSG00000117587.1 ENSMUSG00000117587 ENSMUST00000235034 Gm50099 processed_pseudogene Interval_118456 chr4 131763620 131763835 + 0 NA Intergenic Intergenic 34643 ENSMUSG00000028909.17 ENSMUSG00000028909 ENSMUST00000139641 Ptpru protein_coding Interval_129535 chr5 120759937 120760173 + 0 NA exon (ENSMUSG00000032661.9, exon 11 of 16) protein_coding-exon (ENSMUSG00000032661.9, exon 11 of 16) -2400 ENSMUSG00000032661.9 ENSMUSG00000032661 ENSMUST00000166703 Oas3 protein_coding Interval_134284 chr6 24527064 24528111 + 0 NA promoter-TSS (ENSMUSG00000029685.15) protein_coding-promoter-TSS (ENSMUSG00000029685.15) -61 ENSMUSG00000023089.12 ENSMUSG00000023089 ENSMUST00000141274 Ndufa5 protein_coding Interval_44004 chr13 39151468 39151681 + 0 NA Intergenic Intergenic 190955 ENSMUSG00000096932.2 ENSMUSG00000096932 ENSMUST00000181376 5033403F01Rik antisense Interval_110957 chr4 10848084 10848567 + 0 NA promoter-TSS (ENSMUSG00000066315.9) processed_pseudogene-promoter-TSS (ENSMUSG00000066315.9) -95 ENSMUSG00000066315.9 ENSMUSG00000066315 ENSMUST00000120234 Gm12918 processed_pseudogene Interval_54159 chr14 65814181 65814499 + 0 NA TTS (ENSMUSG00000022033.9) protein_coding-TTS (ENSMUSG00000022033.9) 8403 ENSMUSG00000022033.9 ENSMUSG00000022033 ENSMUST00000139644 Pbk protein_coding Interval_87243 chr19 47153839 47154063 + 0 NA intron (ENSMUSG00000094219.1, intron 2 of 2) protein_coding-intron (ENSMUSG00000094219.1, intron 2 of 2) 3813 ENSMUSG00000094219.1 ENSMUSG00000094219 ENSMUST00000178630 Calhm3 protein_coding Interval_156169 chr8 45439181 45439395 + 0 NA Intergenic Intergenic -28670 ENSMUSG00000031639.12 ENSMUSG00000031639 ENSMUST00000210354 Tlr3 protein_coding Interval_18167 chr10 83182221 83183174 + 0 NA intron (ENSMUSG00000034612.7, intron 2 of 2) protein_coding-intron (ENSMUSG00000034612.7, intron 2 of 2) -24570 ENSMUSG00000088270.1 ENSMUSG00000088270 ENSMUST00000157645 Gm23122 snRNA Interval_88226 chr19 60824464 60825019 + 0 NA intron (ENSMUSG00000024993.15, intron 5 of 6) protein_coding-intron (ENSMUSG00000024993.15, intron 5 of 8) -8925 ENSMUSG00000083036.1 ENSMUSG00000083036 ENSMUST00000121724 Gm15959 processed_pseudogene Interval_94288 chr2 87510451 87510662 + 0 NA exon (ENSMUSG00000025838.12, exon 3 of 3) protein_coding-exon (ENSMUSG00000025838.12, exon 3 of 3) 3131 ENSMUSG00000025838.12 ENSMUSG00000025838 ENSMUST00000026956 Pramel6 protein_coding Interval_128270 chr5 112206475 112207374 + 0 NA exon (ENSMUSG00000101683.6, exon 1 of 3) lincRNA-exon (ENSMUSG00000101683.6, exon 1 of 3) 118 ENSMUSG00000101683.6 ENSMUSG00000101683 ENSMUST00000187272 1700028D13Rik lincRNA Interval_141029 chr6 124474414 124475207 + 0 NA Intergenic Intergenic 8045 ENSMUSG00000118414.1 ENSMUSG00000118414 ENSMUST00000238756 Gm50463 unitary_pseudogene Interval_10353 chr1 169919293 169919692 + 0 NA Intergenic Intergenic -10437 ENSMUSG00000070532.5 ENSMUSG00000070532 ENSMUST00000175731 Ccdc190 protein_coding Interval_160043 chr8 105985423 105986401 + 0 NA TTS (ENSMUSG00000110457.2) transcribed_unprocessed_pseudogene-TTS (ENSMUSG00000110457.2) 2172 ENSMUSG00000110457.2 ENSMUSG00000110457 ENSMUST00000239233 Gm45752 transcribed_unprocessed_pseudogene Interval_78625 chr18 15555772 15557256 + 0 NA intron (ENSMUSG00000047161.12, intron 3 of 5) protein_coding-intron (ENSMUSG00000047161.12, intron 2 of 3) 153427 ENSMUSG00000117541.1 ENSMUSG00000117541 ENSMUST00000234487 Gm50048 antisense Interval_165831 chr9 53635813 53636142 + 0 NA intron (ENSMUSG00000032030.16, intron 6 of 17) protein_coding-intron (ENSMUSG00000032030.16, intron 7 of 18) -4000 ENSMUSG00000064622.1 ENSMUSG00000064622 ENSMUST00000082688 Gm22304 snoRNA Interval_19541 chr10 102825408 102825766 + 0 NA intron (ENSMUSG00000112046.1, intron 2 of 5) transcribed_processed_pseudogene-intron (ENSMUSG00000112046.1, intron 2 of 5) 6216 ENSMUSG00000112046.1 ENSMUSG00000112046 ENSMUST00000219699 Gm5175 transcribed_processed_pseudogene Interval_152252 chr7 130949140 130950118 + 0 NA intron (ENSMUSG00000006205.13, intron 1 of 8) protein_coding-intron (ENSMUSG00000006205.13, intron 1 of 8) 6140 ENSMUSG00000006205.13 ENSMUSG00000006205 ENSMUST00000150905 Htra1 protein_coding Interval_142661 chr6 144889900 144891663 + 0 NA Intergenic Intergenic -87149 ENSMUSG00000087850.1 ENSMUSG00000087850 ENSMUST00000157225 Gm22792 snoRNA Interval_56967 chr14 124333491 124333903 + 0 NA intron (ENSMUSG00000025551.13, intron 1 of 4) protein_coding-intron (ENSMUSG00000025551.13, intron 1 of 4) -64994 ENSMUSG00000115472.1 ENSMUSG00000115472 ENSMUST00000228023 Gm49070 processed_pseudogene Interval_16981 chr10 70270879 70271174 + 0 NA intron (ENSMUSG00000037762.6, intron 1 of 3) protein_coding-intron (ENSMUSG00000037762.6, intron 3 of 5) 4047 ENSMUSG00000037762.6 ENSMUSG00000037762 ENSMUST00000155933 Slc16a9 protein_coding Interval_72877 chr17 32866878 32867875 + 0 NA intron (ENSMUSG00000117654.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000117654.1, intron 1 of 1) 10566 ENSMUSG00000117654.1 ENSMUSG00000117654 ENSMUST00000234587 Gm50050 lincRNA Interval_116727 chr4 116930281 116930573 + 0 NA intron (ENSMUSG00000033948.3, intron 1 of 13) protein_coding-intron (ENSMUSG00000033948.3, intron 1 of 13) -7937 ENSMUSG00000095805.1 ENSMUSG00000095805 ENSMUST00000178290 Gm22092 snRNA Interval_113425 chr4 54932062 54933456 + 0 NA Intergenic Intergenic -12289 ENSMUSG00000060206.11 ENSMUSG00000060206 ENSMUST00000079605 Zfp462 protein_coding Interval_17787 chr10 80074877 80075993 + 0 NA promoter-TSS (ENSMUSG00000035673.10) protein_coding-promoter-TSS (ENSMUSG00000035673.10) 20970 ENSMUSG00000075706.10 ENSMUSG00000075706 ENSMUST00000136081 Gpx4 protein_coding Interval_79435 chr18 31879513 31880111 + 0 NA exon (ENSMUSG00000024400.16, exon 9 of 22) protein_coding-exon (ENSMUSG00000024400.16, exon 9 of 22) 32012 ENSMUSG00000044982.7 ENSMUSG00000044982 ENSMUST00000054984 Sft2d3 protein_coding Interval_80940 chr18 50758742 50759219 + 0 NA Intergenic Intergenic -157561 ENSMUSG00000048875.3 ENSMUSG00000048875 ENSMUST00000056460 Pudp protein_coding Interval_73166 chr17 35219692 35221431 + 0 NA promoter-TSS (ENSMUSG00000081650.1) protein_coding-promoter-TSS (ENSMUSG00000081650.1) -273 ENSMUSG00000081650.1 ENSMUSG00000081650 ENSMUST00000118793 Gm16181 protein_coding Interval_809 chr1 11576670 11576950 + 0 NA intron (ENSMUSG00000057715.13, intron 5 of 12) protein_coding-intron (ENSMUSG00000057715.13, intron 5 of 13) -2496 ENSMUSG00000057715.13 ENSMUSG00000057715 ENSMUST00000191437 A830018L16Rik protein_coding Interval_37377 chr12 66027251 66027826 + 0 NA Intergenic Intergenic 59162 ENSMUSG00000113785.1 ENSMUSG00000113785 ENSMUST00000222655 Gm47975 TEC Interval_36430 chr12 44499756 44499965 + 0 NA intron (ENSMUSG00000020598.16, intron 3 of 24) protein_coding-intron (ENSMUSG00000020598.16, intron 3 of 30) 90070 ENSMUSG00000112448.1 ENSMUSG00000112448 ENSMUST00000218248 Gm48182 TEC Interval_145034 chr7 29554937 29555763 + 0 NA Intergenic Intergenic -3229 ENSMUSG00000046958.10 ENSMUSG00000046958 ENSMUST00000053635 4930432E11Rik transcribed_unitary_pseudogene Interval_170334 chr9 107245946 107247139 + 0 NA Intergenic Intergenic 5322 ENSMUSG00000104086.1 ENSMUSG00000104086 ENSMUST00000195377 1700039M15Rik lincRNA Interval_101344 chr2 180641585 180643169 + 0 NA promoter-TSS (ENSMUSG00000038932.13) protein_coding-promoter-TSS (ENSMUSG00000038932.13) 212 ENSMUSG00000038932.13 ENSMUSG00000038932 ENSMUST00000131881 Tcfl5 protein_coding Interval_149280 chr7 96907438 96908418 + 0 NA exon (ENSMUSG00000048078.16, exon 33 of 33) protein_coding-exon (ENSMUSG00000048078.16, exon 33 of 33) 12174 ENSMUSG00000087980.1 ENSMUSG00000087980 ENSMUST00000157355 Gm22226 snRNA Interval_124842 chr5 56313733 56313965 + 0 NA Intergenic Intergenic -100361 ENSMUSG00000106326.1 ENSMUSG00000106326 ENSMUST00000197497 Gm42977 transcribed_processed_pseudogene Interval_171743 chr9 120672486 120672930 + 0 NA Intergenic Intergenic -1697 ENSMUSG00000111533.1 ENSMUSG00000111533 ENSMUST00000214671 Gm39458 processed_transcript Interval_115817 chr4 104911691 104912043 + 0 NA Intergenic Intergenic -1657 ENSMUSG00000078612.9 ENSMUSG00000078612 ENSMUST00000106804 Fyb2 protein_coding Interval_79439 chr18 31895441 31896780 + 0 NA intron (ENSMUSG00000024400.16, intron 17 of 21) protein_coding-intron (ENSMUSG00000024400.16, intron 17 of 21) 15714 ENSMUSG00000044982.7 ENSMUSG00000044982 ENSMUST00000054984 Sft2d3 protein_coding Interval_163498 chr9 21730826 21731338 + 0 NA intron (ENSMUSG00000032193.9, intron 1 of 9) protein_coding-intron (ENSMUSG00000032193.9, intron 1 of 17) -5025 ENSMUSG00000032193.9 ENSMUSG00000032193 ENSMUST00000214549 Ldlr protein_coding Interval_65233 chr16 20723427 20724923 + 0 NA TTS (ENSMUSG00000022847.15) protein_coding-TTS (ENSMUSG00000022847.15) 6345 ENSMUSG00000021018.8 ENSMUSG00000021018 ENSMUST00000161038 Polr2h protein_coding Interval_163141 chr9 15627286 15628398 + 0 NA promoter-TSS (ENSMUSG00000039977.16) protein_coding-promoter-TSS (ENSMUSG00000039977.16) 72 ENSMUSG00000039977.16 ENSMUSG00000039977 ENSMUST00000152377 Deup1 protein_coding Interval_81734 chr18 64133308 64133924 + 0 NA Intergenic Intergenic 3960 ENSMUSG00000118189.1 ENSMUSG00000118189 ENSMUST00000237990 Gm50109 processed_pseudogene Interval_97878 chr2 144697619 144698891 + 0 NA intron (ENSMUSG00000027430.12, intron 2 of 2) protein_coding-intron (ENSMUSG00000027430.12, intron 4 of 5) -58074 ENSMUSG00000084306.1 ENSMUSG00000084306 ENSMUST00000117385 Gm11743 processed_pseudogene Interval_131047 chr5 134747712 134748617 + 0 NA promoter-TSS (ENSMUSG00000029675.12) protein_coding-promoter-TSS (ENSMUSG00000029675.12) 1122 ENSMUSG00000107318.1 ENSMUSG00000107318 ENSMUST00000200700 Gm30003 antisense Interval_16993 chr10 70318580 70319116 + 0 NA Intergenic Intergenic -19454 ENSMUSG00000112676.1 ENSMUSG00000112676 ENSMUST00000219977 Gm20108 processed_pseudogene Interval_29285 chr11 82684005 82684650 + 0 NA Intergenic Intergenic -40816 ENSMUSG00000083203.1 ENSMUSG00000083203 ENSMUST00000122124 Gm11421 processed_pseudogene Interval_71088 chr17 17845380 17845792 + 0 NA intron (ENSMUSG00000003665.7, intron 4 of 4) protein_coding-intron (ENSMUSG00000003665.7, intron 4 of 4) 9619 ENSMUSG00000003665.7 ENSMUSG00000003665 ENSMUST00000232410 Has1 protein_coding Interval_99201 chr2 157979878 157980285 + 0 NA Intergenic Intergenic 27131 ENSMUSG00000027650.12 ENSMUSG00000027650 ENSMUST00000124338 Tti1 protein_coding Interval_3266 chr1 55258291 55258656 + 0 NA intron (ENSMUSG00000025977.15, intron 2 of 2) protein_coding-intron (ENSMUSG00000025977.15, intron 2 of 2) 21296 ENSMUSG00000046994.9 ENSMUSG00000046994 ENSMUST00000061334 Mars2 protein_coding Interval_118821 chr4 133886093 133888703 + 0 NA intron (ENSMUSG00000003644.17, intron 1 of 3) protein_coding-intron (ENSMUSG00000003644.17, intron 1 of 21) -1115 ENSMUSG00000003644.17 ENSMUSG00000003644 ENSMUST00000173961 Rps6ka1 protein_coding Interval_104384 chr3 64949298 64949509 + 0 NA exon (ENSMUSG00000027827.17, exon 1 of 2) protein_coding-exon (ENSMUSG00000027827.17, exon 1 of 2) -28015 ENSMUSG00000027827.17 ENSMUSG00000027827 ENSMUST00000161956 Kcnab1 protein_coding Interval_100118 chr2 167168046 167168271 + 0 NA intron (ENSMUSG00000050556.9, intron 1 of 1) protein_coding-intron (ENSMUSG00000050556.9, intron 2 of 2) -20544 ENSMUSG00000085151.7 ENSMUSG00000085151 ENSMUST00000147446 1110018N20Rik processed_transcript Interval_161092 chr8 117409887 117411251 + 0 NA intron (ENSMUSG00000034390.16, intron 3 of 10) protein_coding-intron (ENSMUSG00000034390.16, intron 3 of 20) -12847 ENSMUSG00000034390.16 ENSMUSG00000034390 ENSMUST00000212884 Cmip protein_coding Interval_3095 chr1 53224706 53224896 + 0 NA intron (ENSMUSG00000026098.13, intron 6 of 10) protein_coding-intron (ENSMUSG00000026098.13, intron 5 of 12) 28688 ENSMUSG00000100763.1 ENSMUSG00000100763 ENSMUST00000191402 Gm28777 antisense Interval_18011 chr10 81348959 81351004 + 0 NA promoter-TSS (ENSMUSG00000020232.17) protein_coding-promoter-TSS (ENSMUSG00000020232.17) 346 ENSMUSG00000020232.17 ENSMUSG00000020232 ENSMUST00000140160 Hmg20b protein_coding Interval_61323 chr15 80842428 80842716 + 0 NA intron (ENSMUSG00000047888.10, intron 1 of 17) protein_coding-intron (ENSMUSG00000047888.10, intron 4 of 24) -80492 ENSMUSG00000047888.10 ENSMUSG00000047888 ENSMUST00000228525 Tnrc6b protein_coding Interval_81416 chr18 60638118 60638402 + 0 NA intron (ENSMUSG00000043079.17, intron 2 of 3) protein_coding-intron (ENSMUSG00000043079.17, intron 2 of 3) -13998 ENSMUSG00000043079.17 ENSMUSG00000043079 ENSMUST00000139236 Synpo protein_coding Interval_171459 chr9 118477116 118479868 + 0 NA promoter-TSS (ENSMUSG00000032446.14) protein_coding-promoter-TSS (ENSMUSG00000032446.14) -369 ENSMUSG00000032446.14 ENSMUSG00000032446 ENSMUST00000150633 Eomes protein_coding Interval_883 chr1 12984473 12985015 + 0 NA intron (ENSMUSG00000025938.16, intron 2 of 2) protein_coding-intron (ENSMUSG00000025938.16, intron 1 of 7) 6433 ENSMUSG00000025938.16 ENSMUSG00000025938 ENSMUST00000191566 Slco5a1 protein_coding Interval_127320 chr5 102800714 102801465 + 0 NA intron (ENSMUSG00000057315.14, intron 1 of 7) protein_coding-intron (ENSMUSG00000057315.14, intron 2 of 8) -7960 ENSMUSG00000057315.14 ENSMUSG00000057315 ENSMUST00000070000 Arhgap24 protein_coding Interval_129509 chr5 120631451 120631722 + 0 NA intron (ENSMUSG00000094282.1, intron 3 of 6) protein_coding-intron (ENSMUSG00000094282.1, intron 3 of 6) 2649 ENSMUSG00000094282.1 ENSMUSG00000094282 ENSMUST00000177908 Cfap73 protein_coding Interval_31051 chr11 97883298 97884893 + 0 NA promoter-TSS (ENSMUSG00000070336.3) protein_coding-promoter-TSS (ENSMUSG00000070336.3) -499 ENSMUSG00000086917.1 ENSMUSG00000086917 ENSMUST00000152825 Gm11630 lincRNA Interval_15805 chr10 57210477 57211551 + 0 NA Intergenic Intergenic 36984 ENSMUSG00000088253.1 ENSMUSG00000088253 ENSMUST00000157628 Gm24285 snRNA Interval_90442 chr2 30463657 30464383 + 0 NA Intergenic Intergenic 10199 ENSMUSG00000089762.3 ENSMUSG00000089762 ENSMUST00000065134 Ier5l protein_coding Interval_103991 chr3 56335725 56336030 + 0 NA Intergenic Intergenic 109535 ENSMUSG00000077710.1 ENSMUSG00000077710 ENSMUST00000104522 Gm25727 snoRNA Interval_120781 chr4 150615056 150616511 + 0 NA exon (ENSMUSG00000039852.17, exon 12 of 17) protein_coding-exon (ENSMUSG00000039852.17, exon 12 of 17) 368 ENSMUSG00000039852.17 ENSMUSG00000039852 ENSMUST00000136646 Rere protein_coding Interval_40025 chr12 100540914 100541155 + 0 NA Intergenic Intergenic 32942 ENSMUSG00000113687.1 ENSMUSG00000113687 ENSMUST00000223531 Gm49703 TEC Interval_13723 chr10 21419165 21419735 + 0 NA promoter-TSS (ENSMUSG00000037535.5) lincRNA-promoter-TSS (ENSMUSG00000037535.5) 92 ENSMUSG00000037535.5 ENSMUSG00000037535 ENSMUST00000042671 1700021A07Rik lincRNA Interval_84129 chr19 7388200 7389534 + 0 NA Intergenic Intergenic 6330 ENSMUSG00000099923.2 ENSMUSG00000099923 ENSMUST00000186160 1700105P06Rik antisense Interval_51004 chr14 21571857 21572243 + 0 NA intron (ENSMUSG00000021767.19, intron 2 of 5) protein_coding-intron (ENSMUSG00000021767.19, intron 2 of 16) 55175 ENSMUSG00000021767.19 ENSMUSG00000021767 ENSMUST00000226589 Kat6b protein_coding Interval_82279 chr18 69919508 69919957 + 0 NA Intergenic Intergenic -5694 ENSMUSG00000038903.13 ENSMUSG00000038903 ENSMUST00000080050 Ccdc68 protein_coding Interval_65216 chr16 20600674 20601061 + 0 NA intron (ENSMUSG00000046613.19, intron 12 of 18) protein_coding-intron (ENSMUSG00000046613.19, intron 16 of 22) -3585 ENSMUSG00000080669.1 ENSMUSG00000080669 ENSMUST00000117019 Mir1224 miRNA Interval_108504 chr3 127764348 127764958 + 0 NA intron (ENSMUSG00000028028.11, intron 2 of 2) protein_coding-intron (ENSMUSG00000028028.11, intron 1 of 13) -26151 ENSMUSG00000046688.14 ENSMUSG00000046688 ENSMUST00000171621 Tifa protein_coding Interval_102748 chr3 30761146 30762253 + 0 NA intron (ENSMUSG00000051860.13, intron 5 of 6) protein_coding-intron (ENSMUSG00000051860.13, intron 6 of 7) 5477 ENSMUSG00000051860.13 ENSMUSG00000051860 ENSMUST00000192872 Samd7 protein_coding Interval_36820 chr12 54383073 54383623 + 0 NA Intergenic Intergenic 7970 ENSMUSG00000113970.1 ENSMUSG00000113970 ENSMUST00000223334 Gm7550 lincRNA Interval_6345 chr1 106118774 106120318 + 0 NA Intergenic Intergenic 29478 ENSMUSG00000097612.1 ENSMUSG00000097612 ENSMUST00000180947 Gm26509 processed_pseudogene Interval_139113 chr6 95353666 95354463 + 0 NA Intergenic Intergenic -20087 ENSMUSG00000068180.13 ENSMUSG00000068180 ENSMUST00000171594 AY512915 lincRNA Interval_86972 chr19 45270602 45270851 + 0 NA Intergenic Intergenic 33457 ENSMUSG00000100417.2 ENSMUSG00000100417 ENSMUST00000235311 Gm28578 lincRNA Interval_120200 chr4 144229338 144229660 + 0 NA Intergenic Intergenic -16530 ENSMUSG00000046262.14 ENSMUSG00000046262 ENSMUST00000146836 C87977 protein_coding Interval_28781 chr11 78278730 78278942 + 0 NA TTS (ENSMUSG00000086586.1) antisense-TTS (ENSMUSG00000086586.1) 230 ENSMUSG00000086586.1 ENSMUSG00000086586 ENSMUST00000127017 Gm11192 antisense Interval_49522 chr13 112678093 112678731 + 0 NA intron (ENSMUSG00000047789.5, intron 2 of 14) protein_coding-intron (ENSMUSG00000047789.5, intron 2 of 14) 7284 ENSMUSG00000114438.1 ENSMUSG00000114438 ENSMUST00000224584 Gm47827 antisense Interval_101390 chr2 180985289 180986753 + 0 NA promoter-TSS (ENSMUSG00000016356.18) protein_coding-promoter-TSS (ENSMUSG00000016356.18) -514 ENSMUSG00000016356.18 ENSMUSG00000016356 ENSMUST00000155425 Col20a1 protein_coding Interval_42212 chr13 10029994 10030216 + 0 NA intron (ENSMUSG00000046159.16, intron 3 of 4) protein_coding-intron (ENSMUSG00000046159.16, intron 3 of 4) 21743 ENSMUSG00000113502.1 ENSMUSG00000113502 ENSMUST00000222830 Gm47411 TEC Interval_40179 chr12 102345850 102346724 + 0 NA intron (ENSMUSG00000044456.16, intron 3 of 9) protein_coding-intron (ENSMUSG00000044456.16, intron 3 of 9) 59859 ENSMUSG00000021190.14 ENSMUSG00000021190 ENSMUST00000146499 Lgmn protein_coding Interval_83935 chr19 5708215 5708602 + 0 NA TTS (ENSMUSG00000024937.15) protein_coding-TTS (ENSMUSG00000024937.15) 3437 ENSMUSG00000024936.8 ENSMUSG00000024936 ENSMUST00000235419 Kcnk7 protein_coding Interval_173636 chrX 101331938 101333380 + 0 NA Intergenic Intergenic 33465 ENSMUSG00000031302.16 ENSMUSG00000031302 ENSMUST00000144860 Nlgn3 protein_coding Interval_144558 chr7 25880349 25881292 + 0 NA Intergenic Intergenic 1569 ENSMUSG00000091233.3 ENSMUSG00000091233 ENSMUST00000163316 Gm6434 processed_pseudogene Interval_66158 chr16 32009433 32010361 + 0 NA Intergenic Intergenic -6610 ENSMUSG00000022772.12 ENSMUSG00000022772 ENSMUST00000144320 Senp5 protein_coding Interval_123105 chr5 29737213 29738407 + 0 NA intron (ENSMUSG00000029131.14, intron 1 of 1) protein_coding-intron (ENSMUSG00000029131.14, intron 1 of 9) 1821 ENSMUSG00000029131.14 ENSMUSG00000029131 ENSMUST00000139126 Dnajb6 protein_coding Interval_134694 chr6 30450358 30451187 + 0 NA TTS (ENSMUSG00000029775.14) protein_coding-TTS (ENSMUSG00000029775.14) 7002 ENSMUSG00000029775.14 ENSMUSG00000029775 ENSMUST00000150854 Klhdc10 protein_coding Interval_80987 chr18 52331315 52332305 + 0 NA exon (ENSMUSG00000024510.6, exon 1 of 1) protein_coding-exon (ENSMUSG00000024510.6, exon 1 of 1) 261 ENSMUSG00000024510.6 ENSMUSG00000024510 ENSMUST00000025388 Ftmt protein_coding Interval_105039 chr3 79992475 79993094 + 0 NA Intergenic Intergenic -62108 ENSMUSG00000103181.1 ENSMUSG00000103181 ENSMUST00000194077 A330069K06Rik lincRNA Interval_115545 chr4 100614199 100614934 + 0 NA Intergenic Intergenic 33288 ENSMUSG00000082601.1 ENSMUSG00000082601 ENSMUST00000118145 Gm12700 processed_pseudogene Interval_39089 chr12 84970199 84971936 + 0 NA promoter-TSS (ENSMUSG00000042350.13) protein_coding-promoter-TSS (ENSMUSG00000042350.13) -9143 ENSMUSG00000021243.14 ENSMUSG00000021243 ENSMUST00000172241 Fcf1 protein_coding Interval_101046 chr2 174546462 174546822 + 0 NA Intergenic Intergenic -44588 ENSMUSG00000082353.1 ENSMUSG00000082353 ENSMUST00000118738 Vmn1r-ps1 processed_pseudogene Interval_3803 chr1 63176232 63177461 + 0 NA promoter-TSS (ENSMUSG00000025967.16) protein_coding-promoter-TSS (ENSMUSG00000025967.16) -284 ENSMUSG00000025967.16 ENSMUSG00000025967 ENSMUST00000126795 Eef1b2 protein_coding Interval_12620 chr10 3946827 3947517 + 0 NA promoter-TSS (ENSMUSG00000082605.1) processed_pseudogene-promoter-TSS (ENSMUSG00000082605.1) -81 ENSMUSG00000082605.1 ENSMUSG00000082605 ENSMUST00000119653 Gm16148 processed_pseudogene Interval_54921 chr14 76247611 76247935 + 0 NA Intergenic Intergenic -3684 ENSMUSG00000115625.1 ENSMUSG00000115625 ENSMUST00000227933 2900040C04Rik lincRNA Interval_71889 chr17 26804952 26805159 + 0 NA Intergenic Intergenic 18699 ENSMUSG00000024191.15 ENSMUSG00000024191 ENSMUST00000131362 Bnip1 protein_coding Interval_19754 chr10 108519092 108519291 + 0 NA intron (ENSMUSG00000035864.14, intron 10 of 11) protein_coding-intron (ENSMUSG00000035864.14, intron 9 of 10) 36541 ENSMUSG00000112065.1 ENSMUSG00000112065 ENSMUST00000217917 Gm47466 processed_pseudogene Interval_126859 chr5 95970992 95972051 + 0 NA Intergenic Intergenic -2719 ENSMUSG00000107092.1 ENSMUSG00000107092 ENSMUST00000200970 Gm7993 processed_pseudogene Interval_8144 chr1 136040439 136040907 + 0 NA Intergenic Intergenic -10131 ENSMUSG00000097918.1 ENSMUSG00000097918 ENSMUST00000180436 Ascl5 protein_coding Interval_6937 chr1 121075125 121075339 + 0 NA Intergenic Intergenic -12239 ENSMUSG00000097881.7 ENSMUSG00000097881 ENSMUST00000181183 Celrr lincRNA Interval_37000 chr12 56189732 56190426 + 0 NA exon (ENSMUSG00000112650.1, exon 1 of 1) processed_pseudogene-exon (ENSMUSG00000112650.1, exon 1 of 1) 665 ENSMUSG00000112650.1 ENSMUSG00000112650 ENSMUST00000220417 Gm5184 processed_pseudogene Interval_143587 chr7 12986525 12987943 + 0 NA Intergenic Intergenic 9314 ENSMUSG00000030382.15 ENSMUSG00000030382 ENSMUST00000133977 Slc27a5 protein_coding Interval_39913 chr12 99719886 99720157 + 0 NA intron (ENSMUSG00000021176.6, intron 6 of 6) protein_coding-intron (ENSMUSG00000021176.6, intron 5 of 5) 42233 ENSMUSG00000113877.1 ENSMUSG00000113877 ENSMUST00000220762 Gm47208 TEC Interval_96446 chr2 122946255 122946642 + 0 NA Intergenic Intergenic 174730 ENSMUSG00000005803.14 ENSMUSG00000005803 ENSMUST00000176343 Sqor protein_coding Interval_19528 chr10 102370234 102371252 + 0 NA intron (ENSMUSG00000019888.16, intron 6 of 8) protein_coding-intron (ENSMUSG00000019888.16, intron 3 of 5) -45140 ENSMUSG00000111990.1 ENSMUSG00000111990 ENSMUST00000218629 Gm47033 lincRNA Interval_89891 chr2 26269304 26269993 + 0 NA intron (ENSMUSG00000048038.8, intron 11 of 26) protein_coding-intron (ENSMUSG00000048038.8, intron 10 of 25) 24790 ENSMUSG00000048038.8 ENSMUSG00000048038 ENSMUST00000057224 Ccdc187 protein_coding Interval_113692 chr4 57674898 57676025 + 0 NA intron (ENSMUSG00000089945.13, intron 2 of 8) protein_coding-intron (ENSMUSG00000089945.13, intron 3 of 10) 37638 ENSMUSG00000089945.13 ENSMUSG00000089945 ENSMUST00000150412 Pakap protein_coding Interval_12328 chr1 191784657 191786853 + 0 NA Intergenic Intergenic 5559 ENSMUSG00000102596.1 ENSMUSG00000102596 ENSMUST00000192352 Gm20203 processed_pseudogene Interval_45920 chr13 59311747 59312056 + 0 NA intron (ENSMUSG00000114240.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000114240.1, intron 1 of 1) 18342 ENSMUSG00000114240.1 ENSMUSG00000114240 ENSMUST00000224237 Gm47360 lincRNA Interval_168891 chr9 88424555 88424877 + 0 NA intron (ENSMUSG00000092541.7, intron 2 of 8) protein_coding-intron (ENSMUSG00000032422.18, intron 1 of 24) 14235 ENSMUSG00000032422.18 ENSMUSG00000032422 ENSMUST00000126563 Snx14 protein_coding Interval_125123 chr5 64701303 64704256 + 0 NA Intergenic Intergenic -4258 ENSMUSG00000097668.2 ENSMUSG00000097668 ENSMUST00000180650 Gm26761 lincRNA Interval_79273 chr18 29403854 29404854 + 0 NA intron (ENSMUSG00000117618.1, intron 7 of 7) lincRNA-intron (ENSMUSG00000117618.1, intron 7 of 7) -37846 ENSMUSG00000117554.1 ENSMUSG00000117554 ENSMUST00000234621 4930527G23Rik lincRNA Interval_142109 chr6 137189587 137192337 + 0 NA Intergenic Intergenic -44033 ENSMUSG00000107567.1 ENSMUSG00000107567 ENSMUST00000203679 4930480K02Rik TEC Interval_83441 chr18 85543850 85544202 + 0 NA Intergenic Intergenic 172699 ENSMUSG00000117854.1 ENSMUSG00000117854 ENSMUST00000237113 Gm7612 processed_pseudogene Interval_110510 chr4 3401516 3402618 + 0 NA Intergenic Intergenic 15221 ENSMUSG00000083489.1 ENSMUSG00000083489 ENSMUST00000118568 Gm11784 unprocessed_pseudogene Interval_120208 chr4 144297758 144298015 + 0 NA exon (ENSMUSG00000095960.1, exon 1 of 1) processed_pseudogene-exon (ENSMUSG00000095960.1, exon 1 of 1) 1194 ENSMUSG00000095960.1 ENSMUSG00000095960 ENSMUST00000117343 Gm13120 processed_pseudogene Interval_62303 chr15 89581108 89581329 + 0 NA Intergenic Intergenic 3324 ENSMUSG00000022621.16 ENSMUSG00000022621 ENSMUST00000171142 Rabl2 protein_coding Interval_97741 chr2 143683558 143683792 + 0 NA intron (ENSMUSG00000027419.9, intron 2 of 11) protein_coding-intron (ENSMUSG00000027419.9, intron 2 of 11) 112290 ENSMUSG00000087115.7 ENSMUSG00000087115 ENSMUST00000156362 Pcsk2os2 antisense Interval_97009 chr2 130449589 130450878 + 0 NA promoter-TSS (ENSMUSG00000027303.18) protein_coding-promoter-TSS (ENSMUSG00000027303.18) -69 ENSMUSG00000027303.18 ENSMUSG00000027303 ENSMUST00000230886 Ptpra protein_coding Interval_64842 chr16 16373594 16374104 + 0 NA Intergenic Intergenic -5363 ENSMUSG00000116192.1 ENSMUSG00000116192 ENSMUST00000230562 Gm18869 processed_pseudogene Interval_165565 chr9 49530926 49531154 + 0 NA TTS (ENSMUSG00000039542.16) protein_coding-TTS (ENSMUSG00000039542.16) 12752 ENSMUSG00000079564.3 ENSMUSG00000079564 ENSMUST00000215070 Gm11149 antisense Interval_1713 chr1 32172172 32173254 + 0 NA promoter-TSS (ENSMUSG00000026058.11) protein_coding-promoter-TSS (ENSMUSG00000026058.11) -16 ENSMUSG00000026058.11 ENSMUSG00000026058 ENSMUST00000186984 Khdrbs2 protein_coding Interval_33913 chr11 119378830 119379649 + 0 NA intron (ENSMUSG00000039908.14, intron 10 of 11) protein_coding-intron (ENSMUSG00000039908.14, intron 15 of 16) -11233 ENSMUSG00000088015.1 ENSMUSG00000088015 ENSMUST00000157390 Mir1932 miRNA Interval_35717 chr12 28607192 28608891 + 0 NA intron (ENSMUSG00000036655.8, intron 3 of 7) protein_coding-intron (ENSMUSG00000036655.8, intron 3 of 6) 15219 ENSMUSG00000036655.8 ENSMUSG00000036655 ENSMUST00000220836 Colec11 protein_coding Interval_92270 chr2 57755495 57755667 + 0 NA Intergenic Intergenic -101759 ENSMUSG00000087964.1 ENSMUSG00000087964 ENSMUST00000157339 Gm25388 snoRNA Interval_141417 chr6 128120016 128120833 + 0 NA intron (ENSMUSG00000030352.15, intron 1 of 6) protein_coding-intron (ENSMUSG00000030352.15, intron 1 of 8) -25398 ENSMUSG00000076327.1 ENSMUSG00000076327 ENSMUST00000102372 Gm26338 miRNA Interval_79673 chr18 34438734 34439247 + 0 NA intron (ENSMUSG00000014503.15, intron 14 of 14) protein_coding-intron (ENSMUSG00000014503.15, intron 14 of 14) 30501 ENSMUSG00000014503.15 ENSMUSG00000014503 ENSMUST00000166156 Pkd2l2 protein_coding Interval_28835 chr11 78641968 78642680 + 0 NA intron (ENSMUSG00000017376.15, intron 1 of 2) protein_coding-intron (ENSMUSG00000017376.15, intron 1 of 10) -56769 ENSMUSG00000082110.1 ENSMUSG00000082110 ENSMUST00000119052 Gm11196 processed_pseudogene Interval_73568 chr17 40576423 40576847 + 0 NA promoter-TSS (ENSMUSG00000117190.1) protein_coding-promoter-TSS (ENSMUSG00000117190.1) 42 ENSMUSG00000117190.1 ENSMUSG00000117190 ENSMUST00000233672 Esp5 protein_coding Interval_15019 chr10 41973081 41973502 + 0 NA intron (ENSMUSG00000071324.11, intron 6 of 16) protein_coding-intron (ENSMUSG00000071324.11, intron 7 of 17) -44925 ENSMUSG00000111103.1 ENSMUSG00000111103 ENSMUST00000214172 1700016J18Rik bidirectional_promoter_lncRNA Interval_75956 chr17 73743950 73744644 + 0 NA Intergenic Intergenic -34231 ENSMUSG00000024064.14 ENSMUSG00000024064 ENSMUST00000146565 Galnt14 protein_coding Interval_19972 chr10 111592391 111593150 + 0 NA intron (ENSMUSG00000097082.1, intron 2 of 3) lincRNA-intron (ENSMUSG00000097082.1, intron 2 of 3) 1503 ENSMUSG00000097082.1 ENSMUSG00000097082 ENSMUST00000181547 4933440J02Rik lincRNA Interval_41791 chr12 119280883 119281107 + 0 NA Intergenic Intergenic 20017 ENSMUSG00000021908.10 ENSMUSG00000021908 ENSMUST00000022467 Ncoa4-ps processed_pseudogene Interval_167150 chr9 65661901 65662226 + 0 NA Intergenic Intergenic 3086 ENSMUSG00000032387.15 ENSMUSG00000032387 ENSMUST00000216769 Rbpms2 protein_coding Interval_172300 chrX 12624575 12625791 + 0 NA Intergenic Intergenic -4951 ENSMUSG00000083199.1 ENSMUSG00000083199 ENSMUST00000117810 Gm9432 processed_pseudogene Interval_44402 chr13 44640228 44640725 + 0 NA Intergenic Intergenic 18294 ENSMUSG00000113730.1 ENSMUSG00000113730 ENSMUST00000221956 Gm47805 lincRNA Interval_159476 chr8 94966657 94967244 + 0 NA exon (ENSMUSG00000070111.4, exon 2 of 2) TEC-exon (ENSMUSG00000070111.4, exon 2 of 2) 2804 ENSMUSG00000070111.4 ENSMUSG00000070111 ENSMUST00000093603 Gm10286 TEC Interval_10450 chr1 170962476 170963656 + 0 NA intron (ENSMUSG00000026656.15, intron 5 of 6) protein_coding-intron (ENSMUSG00000026656.15, intron 6 of 7) -10307 ENSMUSG00000103676.1 ENSMUSG00000103676 ENSMUST00000194835 Gm38204 antisense Interval_130044 chr5 123891120 123892345 + 0 NA Intergenic Intergenic -11712 ENSMUSG00000049241.5 ENSMUSG00000049241 ENSMUST00000164267 Hcar1 protein_coding Interval_53405 chr14 57041458 57042542 + 0 NA intron (ENSMUSG00000048582.7, intron 1 of 1) protein_coding-intron (ENSMUSG00000048582.7, intron 1 of 1) 15723 ENSMUSG00000048582.7 ENSMUSG00000048582 ENSMUST00000223792 Gja3 protein_coding Interval_66573 chr16 35232314 35232777 + 0 NA intron (ENSMUSG00000022840.9, intron 1 of 20) protein_coding-intron (ENSMUSG00000022840.9, intron 1 of 20) 2378 ENSMUSG00000084581.1 ENSMUSG00000084581 ENSMUST00000122632 Gm25179 snRNA Interval_172748 chrX 48278219 48278513 + 0 NA intron (ENSMUSG00000063785.12, intron 12 of 14) protein_coding-intron (ENSMUSG00000063785.12, intron 12 of 14) -21213 ENSMUSG00000089443.1 ENSMUSG00000089443 ENSMUST00000158818 Gm22528 snRNA Interval_170866 chr9 111343502 111344244 + 0 NA intron (ENSMUSG00000062296.8, intron 3 of 8) protein_coding-intron (ENSMUSG00000062296.8, intron 3 of 21) -31015 ENSMUSG00000062296.8 ENSMUSG00000062296 ENSMUST00000197650 Trank1 protein_coding Interval_73928 chr17 45529800 45530778 + 0 NA intron (ENSMUSG00000023949.7, intron 1 of 4) protein_coding-intron (ENSMUSG00000023949.7, intron 1 of 4) -2764 ENSMUSG00000023949.7 ENSMUSG00000023949 ENSMUST00000233588 Tcte1 protein_coding Interval_43001 chr13 22822083 22822358 + 0 NA Intergenic Intergenic 9128 ENSMUSG00000061296.2 ENSMUSG00000061296 ENSMUST00000072044 Vmn1r210 protein_coding Interval_170320 chr9 106914920 106915141 + 0 NA intron (ENSMUSG00000039716.12, intron 8 of 8) protein_coding-intron (ENSMUSG00000039716.12, intron 40 of 52) -1876 ENSMUSG00000039716.12 ENSMUSG00000039716 ENSMUST00000165182 Dock3 protein_coding Interval_80841 chr18 48725861 48726063 + 0 NA Intergenic Intergenic 62238 ENSMUSG00000117885.1 ENSMUSG00000117885 ENSMUST00000235212 Gm50229 lincRNA Interval_22425 chr11 9970439 9972696 + 0 NA Intergenic Intergenic -233946 ENSMUSG00000081629.1 ENSMUSG00000081629 ENSMUST00000117907 Eif3s6-ps1 processed_pseudogene Interval_147091 chr7 62436351 62436580 + 0 NA Intergenic Intergenic -13220 ENSMUSG00000108986.1 ENSMUSG00000108986 ENSMUST00000207232 Gm32061 lincRNA Interval_5873 chr1 92870192 92870448 + 0 NA intron (ENSMUSG00000034212.14, intron 17 of 17) protein_coding-intron (ENSMUSG00000034212.14, intron 17 of 17) 1400 ENSMUSG00000034212.14 ENSMUSG00000034212 ENSMUST00000112998 Ankmy1 protein_coding Interval_44503 chr13 45484190 45484598 + 0 NA Intergenic Intergenic 1936 ENSMUSG00000089211.1 ENSMUSG00000089211 ENSMUST00000158586 Gm23387 snRNA Interval_78550 chr18 14642567 14642908 + 0 NA intron (ENSMUSG00000037013.17, intron 4 of 4) protein_coding-intron (ENSMUSG00000037013.17, intron 5 of 10) 5193 ENSMUSG00000094306.1 ENSMUSG00000094306 ENSMUST00000084007 Gm24924 snRNA Interval_24653 chr11 35667401 35667664 + 0 NA intron (ENSMUSG00000056427.10, intron 26 of 35) protein_coding-intron (ENSMUSG00000056427.10, intron 26 of 35) 50716 ENSMUSG00000065583.1 ENSMUSG00000065583 ENSMUST00000083649 Mir218-2 miRNA Interval_103355 chr3 40243445 40243706 + 0 NA Intergenic Intergenic 266199 ENSMUSG00000037884.6 ENSMUSG00000037884 ENSMUST00000202778 1700017G19Rik lincRNA Interval_69174 chr16 91124956 91125261 + 0 NA Intergenic Intergenic 8321 ENSMUSG00000116981.1 ENSMUSG00000116981 ENSMUST00000231448 Gm49611 processed_pseudogene Interval_65818 chr16 29382979 29383714 + 0 NA Intergenic Intergenic -4763 ENSMUSG00000048939.13 ENSMUSG00000048939 ENSMUST00000152040 Atp13a5 protein_coding Interval_136935 chr6 64727554 64730183 + 0 NA promoter-TSS (ENSMUSG00000073043.5) protein_coding-promoter-TSS (ENSMUSG00000073043.5) -257 ENSMUSG00000073043.5 ENSMUSG00000073043 ENSMUST00000101351 Atoh1 protein_coding Interval_149053 chr7 92714926 92715202 + 0 NA Intergenic Intergenic 8291 ENSMUSG00000109395.1 ENSMUSG00000109395 ENSMUST00000207640 Gm45199 TEC Interval_136958 chr6 65078061 65079724 + 0 NA exon (ENSMUSG00000029920.9, exon 1 of 1) protein_coding-exon (ENSMUSG00000029920.9, exon 1 of 1) 36225 ENSMUSG00000029920.9 ENSMUSG00000029920 ENSMUST00000203104 Smarcad1 protein_coding Interval_24076 chr11 30024324 30024893 + 0 NA exon (ENSMUSG00000044072.14, exon 2 of 42) protein_coding-exon (ENSMUSG00000044072.14, exon 2 of 42) 42194 ENSMUSG00000080906.1 ENSMUSG00000080906 ENSMUST00000121962 Gm12095 processed_pseudogene Interval_46434 chr13 65227564 65228458 + 0 NA Intergenic Intergenic -14124 ENSMUSG00000110393.2 ENSMUSG00000110393 ENSMUST00000211729 Gm36445 lincRNA Interval_59381 chr15 51990694 51992421 + 0 NA promoter-TSS (ENSMUSG00000022314.10) protein_coding-promoter-TSS (ENSMUSG00000022314.10) -47 ENSMUSG00000022314.10 ENSMUSG00000022314 ENSMUST00000226529 Rad21 protein_coding Interval_23574 chr11 23478890 23480581 + 0 NA promoter-TSS (ENSMUSG00000065591.1) snRNA-promoter-TSS (ENSMUSG00000065591.1) -68 ENSMUSG00000065591.1 ENSMUSG00000065591 ENSMUST00000083657 Gm22753 snRNA Interval_147271 chr7 65349106 65349478 + 0 NA intron (ENSMUSG00000030516.14, intron 2 of 27) protein_coding-intron (ENSMUSG00000030516.14, intron 2 of 26) 17490 ENSMUSG00000108338.1 ENSMUSG00000108338 ENSMUST00000206550 Gm44794 TEC Interval_94291 chr2 87534616 87535523 + 0 NA Intergenic Intergenic 3273 ENSMUSG00000061520.4 ENSMUSG00000061520 ENSMUST00000217113 Olfr153 protein_coding Interval_170716 chr9 110270654 110271192 + 0 NA Intergenic Intergenic -10364 ENSMUSG00000098973.1 ENSMUSG00000098973 ENSMUST00000184437 Mir6236 miRNA Interval_171012 chr9 113710933 113711625 + 0 NA Intergenic Intergenic -13702 ENSMUSG00000032504.15 ENSMUSG00000032504 ENSMUST00000156425 Pdcd6ip protein_coding Interval_93321 chr2 71913626 71914751 + 0 NA Intergenic Intergenic 40842 ENSMUSG00000006494.11 ENSMUSG00000006494 ENSMUST00000129427 Pdk1 protein_coding Interval_74436 chr17 50508262 50510220 + 0 NA promoter-TSS (ENSMUSG00000038910.7) protein_coding-promoter-TSS (ENSMUSG00000038910.7) -97753 ENSMUSG00000038910.7 ENSMUSG00000038910 ENSMUST00000233823 Plcl2 protein_coding Interval_97088 chr2 131151759 131152734 + 0 NA intron (ENSMUSG00000027327.16, intron 2 of 6) protein_coding-intron (ENSMUSG00000027327.16, intron 2 of 5) -7291 ENSMUSG00000087405.1 ENSMUSG00000087405 ENSMUST00000137176 Gm14232 antisense Interval_127885 chr5 108581145 108581507 + 0 NA promoter-TSS (ENSMUSG00000062234.14) protein_coding-promoter-TSS (ENSMUSG00000062234.14) 10381 ENSMUSG00000062234.14 ENSMUSG00000062234 ENSMUST00000199662 Gak protein_coding Interval_170917 chr9 112111294 112111830 + 0 NA intron (ENSMUSG00000032503.18, intron 17 of 18) protein_coding-intron (ENSMUSG00000032503.18, intron 17 of 18) 7149 ENSMUSG00000065441.2 ENSMUSG00000065441 ENSMUST00000083507 Mir128-2 miRNA Interval_74942 chr17 57645462 57645865 + 0 NA Intergenic Intergenic -87698 ENSMUSG00000117223.1 ENSMUSG00000117223 ENSMUST00000233817 Gm49842 unprocessed_pseudogene Interval_71913 chr17 26964800 26965008 + 0 NA exon (ENSMUSG00000067629.13, exon 15 of 17) protein_coding-exon (ENSMUSG00000067629.13, exon 15 of 17) -8313 ENSMUSG00000117819.1 ENSMUSG00000117819 ENSMUST00000133257 Gm50253 protein_coding Interval_101383 chr2 180928390 180929283 + 0 NA promoter-TSS (ENSMUSG00000038840.7) protein_coding-promoter-TSS (ENSMUSG00000038840.7) -187 ENSMUSG00000038840.7 ENSMUSG00000038840 ENSMUST00000108875 Birc7 protein_coding Interval_143295 chr7 5002954 5003409 + 0 NA Intergenic Intergenic -7841 ENSMUSG00000051550.10 ENSMUSG00000051550 ENSMUST00000160808 Zfp579 protein_coding Interval_73894 chr17 45348720 45349093 + 0 NA Intergenic Intergenic 84635 ENSMUSG00000023932.9 ENSMUSG00000023932 ENSMUST00000232910 Cdc5l protein_coding Interval_166623 chr9 61360841 61361787 + 0 NA Intergenic Intergenic 10313 ENSMUSG00000074256.3 ENSMUSG00000074256 ENSMUST00000187131 Gm10655 lincRNA Interval_6674 chr1 118671980 118672480 + 0 NA intron (ENSMUSG00000026380.10, intron 13 of 14) protein_coding-intron (ENSMUSG00000026380.10, intron 13 of 14) -9591 ENSMUSG00000088363.1 ENSMUSG00000088363 ENSMUST00000157738 Gm23497 snRNA Interval_26899 chr11 61430468 61431129 + 0 NA Intergenic Intergenic -13983 ENSMUSG00000082032.1 ENSMUSG00000082032 ENSMUST00000121719 Gm12271 processed_pseudogene Interval_158725 chr8 85572909 85573478 + 0 NA Intergenic Intergenic -19727 ENSMUSG00000031701.6 ENSMUSG00000031701 ENSMUST00000211630 Dnaja2 protein_coding Interval_109432 chr3 142304991 142305258 + 0 NA promoter-TSS (ENSMUSG00000028273.15) protein_coding-promoter-TSS (ENSMUSG00000028273.15) -1145 ENSMUSG00000028273.15 ENSMUSG00000028273 ENSMUST00000058626 Pdlim5 protein_coding Interval_109983 chr3 152300816 152301868 + 0 NA intron (ENSMUSG00000054942.13, intron 1 of 2) protein_coding-intron (ENSMUSG00000054942.13, intron 7 of 13) -35574 ENSMUSG00000039103.12 ENSMUSG00000039103 ENSMUST00000199752 Nexn protein_coding Interval_124532 chr5 50102621 50103120 + 0 NA Intergenic Intergenic 43774 ENSMUSG00000106430.1 ENSMUSG00000106430 ENSMUST00000198863 Gm42460 TEC Interval_62269 chr15 89343283 89343775 + 0 NA Intergenic Intergenic 8599 ENSMUSG00000022613.8 ENSMUSG00000022613 ENSMUST00000162033 Miox protein_coding Interval_106891 chr3 101611923 101612423 + 0 NA Intergenic Intergenic -15043 ENSMUSG00000104693.1 ENSMUSG00000104693 ENSMUST00000200347 Gm42941 sense_intronic Interval_115620 chr4 101437149 101438208 + 0 NA intron (ENSMUSG00000028527.18, intron 1 of 4) protein_coding-intron (ENSMUSG00000028527.18, intron 2 of 5) -9545 ENSMUSG00000028527.18 ENSMUSG00000028527 ENSMUST00000155749 Ak4 protein_coding Interval_23946 chr11 28671653 28671892 + 0 NA Intergenic Intergenic -9792 ENSMUSG00000084966.1 ENSMUSG00000084966 ENSMUST00000146554 2810471M01Rik lincRNA Interval_143291 chr7 4978318 4978503 + 0 NA Intergenic Intergenic -7449 ENSMUSG00000085272.7 ENSMUSG00000085272 ENSMUST00000133272 Sbk3 protein_coding Interval_95670 chr2 113893778 113894525 + 0 NA Intergenic Intergenic 26411 ENSMUSG00000096006.1 ENSMUSG00000096006 ENSMUST00000178049 Gm21596 processed_pseudogene Interval_73855 chr17 44648938 44649607 + 0 NA intron (ENSMUSG00000039153.17, intron 2 of 4) protein_coding-intron (ENSMUSG00000039153.17, intron 5 of 7) -8129 ENSMUSG00000070209.1 ENSMUSG00000070209 ENSMUST00000093699 n-R5s27 rRNA Interval_81352 chr18 58835866 58838048 + 0 NA promoter-TSS (ENSMUSG00000053441.5) protein_coding-promoter-TSS (ENSMUSG00000053441.5) 58532 ENSMUSG00000118337.1 ENSMUSG00000118337 ENSMUST00000235435 Gm50227 lincRNA Interval_36125 chr12 36141107 36141477 + 0 NA intron (ENSMUSG00000020547.5, intron 1 of 5) protein_coding-intron (ENSMUSG00000020547.5, intron 1 of 11) 6630 ENSMUSG00000113349.1 ENSMUSG00000113349 ENSMUST00000222844 Gm48369 TEC Interval_17981 chr10 81223688 81224837 + 0 NA intron (ENSMUSG00000034958.11, intron 2 of 12) protein_coding-intron (ENSMUSG00000034958.11, intron 2 of 12) 6523 ENSMUSG00000034958.11 ENSMUSG00000034958 ENSMUST00000133555 Atcay protein_coding Interval_137538 chr6 72956080 72959009 + 0 NA TTS (ENSMUSG00000079523.8) protein_coding-TTS (ENSMUSG00000079523.8) 855 ENSMUSG00000079523.8 ENSMUSG00000079523 ENSMUST00000144337 Tmsb10 protein_coding Interval_168808 chr9 87293670 87294357 + 0 NA Intergenic Intergenic -66055 ENSMUSG00000056919.9 ENSMUSG00000056919 ENSMUST00000144137 Cep162 protein_coding Interval_171383 chr9 117194749 117194990 + 0 NA intron (ENSMUSG00000039607.17, intron 1 of 13) protein_coding-intron (ENSMUSG00000039607.17, intron 1 of 12) -57667 ENSMUSG00000079669.2 ENSMUSG00000079669 ENSMUST00000172075 Gm17396 processed_transcript Interval_75229 chr17 64930920 64931930 + 0 NA Intergenic Intergenic 13427 ENSMUSG00000077691.1 ENSMUSG00000077691 ENSMUST00000104503 Gm25344 snoRNA Interval_41888 chr13 3898731 3899007 + 0 NA TTS (ENSMUSG00000113128.1) TEC-TTS (ENSMUSG00000113128.1) 1379 ENSMUSG00000113128.1 ENSMUSG00000113128 ENSMUST00000223370 Gm47813 TEC Interval_25564 chr11 49792954 49795267 + 0 NA promoter-TSS (ENSMUSG00000020363.6) protein_coding-promoter-TSS (ENSMUSG00000020363.6) -68 ENSMUSG00000020363.6 ENSMUSG00000020363 ENSMUST00000020629 Gfpt2 protein_coding Interval_83723 chr19 3962668 3963216 + 0 NA intron (ENSMUSG00000037263.13, intron 1 of 8) protein_coding-intron (ENSMUSG00000037263.13, intron 1 of 9) 4136 ENSMUSG00000037263.13 ENSMUSG00000037263 ENSMUST00000025794 Aldh3b3 protein_coding Interval_5336 chr1 87689388 87690590 + 0 NA intron (ENSMUSG00000026288.14, intron 4 of 22) protein_coding-intron (ENSMUSG00000026288.14, intron 9 of 26) 13750 ENSMUSG00000026288.14 ENSMUSG00000026288 ENSMUST00000163548 Inpp5d protein_coding Interval_68917 chr16 88679277 88679475 + 0 NA Intergenic Intergenic 3352 ENSMUSG00000116547.1 ENSMUSG00000116547 ENSMUST00000231885 Gm7667 processed_pseudogene Interval_53512 chr14 57972035 57973138 + 0 NA intron (ENSMUSG00000021973.9, intron 1 of 7) protein_coding-intron (ENSMUSG00000021973.9, intron 1 of 11) -26798 ENSMUSG00000097303.2 ENSMUSG00000097303 ENSMUST00000224786 3110083C13Rik bidirectional_promoter_lncRNA Interval_129244 chr5 118405469 118406033 + 0 NA Intergenic Intergenic -8421 ENSMUSG00000106812.1 ENSMUSG00000106812 ENSMUST00000201179 Gm28563 lincRNA Interval_69873 chr16 97783244 97783619 + 0 NA Intergenic Intergenic 16158 ENSMUSG00000014039.18 ENSMUSG00000014039 ENSMUST00000135505 Prdm15 protein_coding Interval_125977 chr5 76420778 76421300 + 0 NA Intergenic Intergenic 10685 ENSMUSG00000107160.1 ENSMUSG00000107160 ENSMUST00000201954 Gm42666 processed_pseudogene Interval_29675 chr11 85972315 85973001 + 0 NA Intergenic Intergenic 22163 ENSMUSG00000081632.1 ENSMUSG00000081632 ENSMUST00000118790 Gm11443 processed_pseudogene Interval_68553 chr16 78602782 78603376 + 0 NA Intergenic Intergenic -21668 ENSMUSG00000093988.1 ENSMUSG00000093988 ENSMUST00000083459 Gm24861 snRNA Interval_22691 chr11 13069312 13069591 + 0 NA Intergenic Intergenic 71785 ENSMUSG00000084055.1 ENSMUSG00000084055 ENSMUST00000117869 Gm12004 processed_pseudogene Interval_10509 chr1 171389919 171390596 + 0 NA exon (ENSMUSG00000048865.16, exon 1 of 1) protein_coding-exon (ENSMUSG00000048865.16, exon 1 of 1) 1258 ENSMUSG00000048865.16 ENSMUSG00000048865 ENSMUST00000194914 Arhgap30 protein_coding Interval_89784 chr2 25421662 25422190 + 0 NA Intergenic Intergenic -2722 ENSMUSG00000036587.13 ENSMUSG00000036587 ENSMUST00000142156 Fut7 protein_coding Interval_110617 chr4 4771692 4772096 + 0 NA intron (ENSMUSG00000066324.2, intron 3 of 4) protein_coding-intron (ENSMUSG00000066324.2, intron 3 of 4) 21461 ENSMUSG00000066324.2 ENSMUSG00000066324 ENSMUST00000084949 Impad1 protein_coding Interval_147164 chr7 63983437 63984529 + 0 NA Intergenic Intergenic 21743 ENSMUSG00000108313.1 ENSMUSG00000108313 ENSMUST00000206457 Gm45052 lincRNA Interval_48902 chr13 104580421 104581514 + 0 NA Intergenic Intergenic -103964 ENSMUSG00000084860.1 ENSMUSG00000084860 ENSMUST00000131215 2610204G07Rik antisense Interval_136085 chr6 50588385 50588875 + 0 NA intron (ENSMUSG00000029828.4, intron 4 of 9) protein_coding-intron (ENSMUSG00000029828.4, intron 4 of 9) 8002 ENSMUSG00000029828.4 ENSMUSG00000029828 ENSMUST00000031852 4921507P07Rik protein_coding Interval_58563 chr15 36151667 36152500 + 0 NA exon (ENSMUSG00000048230.6, exon 4 of 5) protein_coding-exon (ENSMUSG00000048230.6, exon 4 of 5) 12734 ENSMUSG00000048230.6 ENSMUSG00000048230 ENSMUST00000227781 Fbxo43 protein_coding Interval_14737 chr10 39511168 39511420 + 0 NA promoter-TSS (ENSMUSG00000019843.14) protein_coding-promoter-TSS (ENSMUSG00000019843.14) 46768 ENSMUSG00000087014.1 ENSMUSG00000087014 ENSMUST00000153722 Gm16364 antisense Interval_153624 chr8 3997117 3997328 + 0 NA exon (ENSMUSG00000097657.2, exon 1 of 1) processed_pseudogene-exon (ENSMUSG00000097657.2, exon 1 of 1) 2596 ENSMUSG00000097657.2 ENSMUSG00000097657 ENSMUST00000181162 Gm7389 processed_pseudogene Interval_37743 chr12 71577088 71577940 + 0 NA promoter-TSS (ENSMUSG00000114028.1) lincRNA-promoter-TSS (ENSMUSG00000114028.1) -451 ENSMUSG00000114028.1 ENSMUSG00000114028 ENSMUST00000222033 9630002D21Rik lincRNA Interval_111974 chr4 32918411 32919056 + 0 NA intron (ENSMUSG00000040183.13, intron 1 of 16) protein_coding-intron (ENSMUSG00000040183.13, intron 1 of 16) 26047 ENSMUSG00000083565.1 ENSMUSG00000083565 ENSMUST00000119904 Gm11941 processed_pseudogene Interval_95278 chr2 105518276 105518640 + 0 NA Intergenic Intergenic 19024 ENSMUSG00000081701.1 ENSMUSG00000081701 ENSMUST00000117578 Gm13890 transcribed_processed_pseudogene Interval_110992 chr4 11075647 11076632 + 0 NA promoter-TSS (ENSMUSG00000050323.14) protein_coding-promoter-TSS (ENSMUSG00000050323.14) 44 ENSMUSG00000050323.14 ENSMUSG00000050323 ENSMUST00000141019 Ndufaf6 protein_coding Interval_117148 chr4 120037005 120037666 + 0 NA intron (ENSMUSG00000028634.17, intron 1 of 1) protein_coding-intron (ENSMUSG00000028634.17, intron 2 of 8) 4569 ENSMUSG00000028634.17 ENSMUSG00000028634 ENSMUST00000166542 Hivep3 protein_coding Interval_3701 chr1 61306255 61306987 + 0 NA exon (ENSMUSG00000085248.2, exon 2 of 4) lincRNA-exon (ENSMUSG00000085248.2, exon 2 of 4) 4712 ENSMUSG00000085248.2 ENSMUSG00000085248 ENSMUST00000128274 Gm11587 lincRNA Interval_152195 chr7 130574029 130575223 + 0 NA intron (ENSMUSG00000030849.18, intron 2 of 6) protein_coding-intron (ENSMUSG00000030849.18, intron 2 of 6) -35418 ENSMUSG00000040331.16 ENSMUSG00000040331 ENSMUST00000161414 Nsmce4a protein_coding Interval_146810 chr7 52037775 52039096 + 0 NA Intergenic Intergenic -9277 ENSMUSG00000109526.1 ENSMUSG00000109526 ENSMUST00000207138 Gm9357 processed_pseudogene Interval_167098 chr9 65225522 65226348 + 0 NA intron (ENSMUSG00000032392.11, intron 2 of 6) protein_coding-intron (ENSMUSG00000032392.11, intron 2 of 6) -24094 ENSMUSG00000095892.1 ENSMUSG00000095892 ENSMUST00000093721 Rnu5g snRNA Interval_52673 chr14 48477864 48478072 + 0 NA intron (ENSMUSG00000036339.18, intron 3 of 4) protein_coding-intron (ENSMUSG00000036339.18, intron 6 of 15) 5646 ENSMUSG00000036339.18 ENSMUSG00000036339 ENSMUST00000226344 Tmem260 protein_coding Interval_161941 chr8 123924146 123925379 + 0 NA intron (ENSMUSG00000039509.8, intron 12 of 13) protein_coding-intron (ENSMUSG00000039509.8, intron 12 of 25) -9127 ENSMUSG00000039509.8 ENSMUSG00000039509 ENSMUST00000212133 Nup133 protein_coding Interval_30231 chr11 91322396 91322971 + 0 NA Intergenic Intergenic 254875 ENSMUSG00000046755.5 ENSMUSG00000046755 ENSMUST00000061019 Kif2b protein_coding Interval_154124 chr8 12903369 12904398 + 0 NA intron (ENSMUSG00000086770.1, intron 1 of 1) protein_coding-intron (ENSMUSG00000031442.21, intron 2 of 29) 11875 ENSMUSG00000086770.1 ENSMUSG00000086770 ENSMUST00000150686 Gm15351 antisense Interval_1257 chr1 18410331 18411071 + 0 NA Intergenic Intergenic -145621 ENSMUSG00000067773.6 ENSMUSG00000067773 ENSMUST00000097817 Defb41 protein_coding Interval_9902 chr1 163968945 163970077 + 0 NA intron (ENSMUSG00000041406.14, intron 1 of 2) protein_coding-intron (ENSMUSG00000041406.14, intron 12 of 23) 25030 ENSMUSG00000041406.14 ENSMUSG00000041406 ENSMUST00000162949 BC055324 protein_coding Interval_139052 chr6 94598662 94599639 + 0 NA intron (ENSMUSG00000045100.11, intron 10 of 11) protein_coding-intron (ENSMUSG00000045100.11, intron 8 of 9) 7265 ENSMUSG00000098531.1 ENSMUSG00000098531 ENSMUST00000183891 Mir7041 miRNA Interval_113475 chr4 55264103 55264471 + 0 NA intron (ENSMUSG00000087614.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000087614.1, intron 1 of 2) 9547 ENSMUSG00000081504.3 ENSMUSG00000081504 ENSMUST00000121282 Gm12508 processed_pseudogene Interval_64833 chr16 16295930 16296167 + 0 NA Intergenic Intergenic -8552 ENSMUSG00000022792.16 ENSMUSG00000022792 ENSMUST00000162734 Yars2 protein_coding Interval_56208 chr14 112548579 112549269 + 0 NA Intergenic Intergenic 31627 ENSMUSG00000115126.1 ENSMUSG00000115126 ENSMUST00000227657 Gm19223 processed_pseudogene Interval_170875 chr9 111460189 111461403 + 0 NA intron (ENSMUSG00000032500.10, intron 1 of 4) protein_coding-intron (ENSMUSG00000032500.10, intron 1 of 4) 21715 ENSMUSG00000032500.10 ENSMUSG00000032500 ENSMUST00000111879 Dclk3 protein_coding Interval_78988 chr18 23651475 23651752 + 0 NA promoter-TSS (ENSMUSG00000024302.16) protein_coding-promoter-TSS (ENSMUSG00000024302.16) 224 ENSMUSG00000114088.1 ENSMUSG00000114088 ENSMUST00000220789 Gm47898 antisense Interval_17279 chr10 75537648 75537955 + 0 NA TTS (ENSMUSG00000020180.10) protein_coding-TTS (ENSMUSG00000020180.10) 16093 ENSMUSG00000046807.10 ENSMUSG00000046807 ENSMUST00000051129 Lrrc75b protein_coding Interval_57747 chr15 18216813 18217345 + 0 NA intron (ENSMUSG00000098150.2, intron 1 of 7) processed_transcript-intron (ENSMUSG00000098150.2, intron 1 of 7) 53198 ENSMUSG00000098222.2 ENSMUSG00000098222 ENSMUST00000182954 Gm8318 processed_pseudogene Interval_119094 chr4 135507190 135509007 + 0 NA intron (ENSMUSG00000028801.14, intron 2 of 3) protein_coding-intron (ENSMUSG00000028801.14, intron 3 of 8) 4381 ENSMUSG00000080474.1 ENSMUSG00000080474 ENSMUST00000116824 Gm25317 miRNA Interval_118803 chr4 133801171 133801421 + 0 NA Intergenic Intergenic -3577 ENSMUSG00000084555.1 ENSMUSG00000084555 ENSMUST00000122606 Gm25270 snRNA Interval_156559 chr8 51595958 51597033 + 0 NA Intergenic Intergenic 143100 ENSMUSG00000110085.1 ENSMUSG00000110085 ENSMUST00000210806 Gm17911 processed_pseudogene Interval_118157 chr4 129275848 129277188 + 0 NA Intergenic Intergenic 6428 ENSMUSG00000093163.1 ENSMUSG00000093163 ENSMUST00000175422 Gm22994 miRNA Interval_139266 chr6 97720272 97720765 + 0 NA Intergenic Intergenic -9921 ENSMUSG00000094510.1 ENSMUSG00000094510 ENSMUST00000180099 Gm24565 snRNA Interval_91561 chr2 43365700 43366435 + 0 NA Intergenic Intergenic 153331 ENSMUSG00000080994.2 ENSMUSG00000080994 ENSMUST00000119418 Gm13464 processed_pseudogene Interval_15486 chr10 48807754 48807934 + 0 NA Intergenic Intergenic 2637 ENSMUSG00000111704.1 ENSMUSG00000111704 ENSMUST00000214877 Gm47379 processed_pseudogene Interval_43540 chr13 32900790 32901071 + 0 NA Intergenic Intergenic -2773 ENSMUSG00000079049.9 ENSMUSG00000079049 ENSMUST00000221019 Serpinb1c protein_coding Interval_95579 chr2 112454384 112455737 + 0 NA promoter-TSS (ENSMUSG00000055943.5) protein_coding-promoter-TSS (ENSMUSG00000055943.5) 63 ENSMUSG00000055943.5 ENSMUSG00000055943 ENSMUST00000069747 Emc7 protein_coding Interval_102806 chr3 31208579 31209318 + 0 NA exon (ENSMUSG00000069072.9, exon 8 of 8) protein_coding-exon (ENSMUSG00000069072.9, exon 8 of 8) 49446 ENSMUSG00000069072.9 ENSMUSG00000069072 ENSMUST00000108245 Slc7a14 protein_coding Interval_120582 chr4 149517715 149518729 + 0 NA promoter-TSS (ENSMUSG00000028988.13) protein_coding-promoter-TSS (ENSMUSG00000028988.13) -940 ENSMUSG00000084646.1 ENSMUSG00000084646 ENSMUST00000122697 Gm24381 snRNA Interval_142130 chr6 137487658 137489084 + 0 NA intron (ENSMUSG00000015766.14, intron 18 of 20) protein_coding-intron (ENSMUSG00000015766.14, intron 19 of 21) 57066 ENSMUSG00000107759.1 ENSMUSG00000107759 ENSMUST00000204925 Gm44258 sense_intronic Interval_114556 chr4 82466858 82467327 + 0 NA intron (ENSMUSG00000008575.17, intron 2 of 4) protein_coding-intron (ENSMUSG00000008575.17, intron 2 of 11) 27682 ENSMUSG00000084595.1 ENSMUSG00000084595 ENSMUST00000122646 n-R5s188 rRNA Interval_104767 chr3 72204875 72206375 + 0 NA Intergenic Intergenic 24888 ENSMUSG00000103859.1 ENSMUSG00000103859 ENSMUST00000192368 Gm37603 processed_pseudogene Interval_43894 chr13 37910786 37911863 + 0 NA intron (ENSMUSG00000039087.17, intron 6 of 9) protein_coding-intron (ENSMUSG00000039087.17, intron 5 of 11) -35692 ENSMUSG00000039087.17 ENSMUSG00000039087 ENSMUST00000162849 Rreb1 protein_coding Interval_150182 chr7 107664235 107664765 + 0 NA promoter-TSS (ENSMUSG00000036528.16) protein_coding-promoter-TSS (ENSMUSG00000036528.16) -811 ENSMUSG00000036528.16 ENSMUSG00000036528 ENSMUST00000208159 Ppfibp2 protein_coding Interval_80673 chr18 46184539 46185217 + 0 NA intron (ENSMUSG00000033949.12, intron 4 of 9) protein_coding-intron (ENSMUSG00000033949.12, intron 4 of 9) -9264 ENSMUSG00000033949.12 ENSMUSG00000033949 ENSMUST00000237526 Trim36 protein_coding Interval_147413 chr7 66630804 66631913 + 0 NA Intergenic Intergenic -12210 ENSMUSG00000109249.1 ENSMUSG00000109249 ENSMUST00000209012 Gm44610 TEC Interval_167461 chr9 69505163 69505669 + 0 NA Intergenic Intergenic 18633 ENSMUSG00000032231.14 ENSMUSG00000032231 ENSMUST00000154591 Anxa2 protein_coding Interval_69284 chr16 91905290 91906115 + 0 NA intron (ENSMUSG00000022957.20, intron 2 of 6) protein_coding-intron (ENSMUSG00000022957.20, intron 35 of 39) 1639 ENSMUSG00000022957.20 ENSMUSG00000022957 ENSMUST00000137575 Itsn1 protein_coding Interval_69603 chr16 94557534 94557796 + 0 NA Intergenic Intergenic -13242 ENSMUSG00000022897.15 ENSMUSG00000022897 ENSMUST00000134383 Dyrk1a protein_coding Interval_118683 chr4 133176984 133177420 + 0 NA TTS (ENSMUSG00000028868.13) protein_coding-TTS (ENSMUSG00000028868.13) -5488 ENSMUSG00000089298.1 ENSMUSG00000089298 ENSMUST00000158673 Gm24636 misc_RNA Interval_3569 chr1 59646280 59647434 + 0 NA exon (ENSMUSG00000103821.1, exon 1 of 1) TEC-exon (ENSMUSG00000103821.1, exon 1 of 1) 1214 ENSMUSG00000103821.1 ENSMUSG00000103821 ENSMUST00000192922 D430013B06Rik TEC Interval_4149 chr1 70806535 70807009 + 0 NA intron (ENSMUSG00000045648.15, intron 5 of 5) protein_coding-intron (ENSMUSG00000045648.15, intron 3 of 3) 80849 ENSMUSG00000045648.15 ENSMUSG00000045648 ENSMUST00000162182 Vwc2l protein_coding Interval_73284 chr17 35962948 35963501 + 0 NA TTS (ENSMUSG00000038762.15) protein_coding-TTS (ENSMUSG00000038762.15) 1048 ENSMUSG00000038762.15 ENSMUSG00000038762 ENSMUST00000172661 Abcf1 protein_coding Interval_146205 chr7 44683360 44685283 + 0 NA Intergenic Intergenic 16088 ENSMUSG00000070574.2 ENSMUSG00000070574 ENSMUST00000094460 2310016G11Rik antisense Interval_131860 chr5 140434972 140435625 + 0 NA intron (ENSMUSG00000056076.13, intron 10 of 18) protein_coding-intron (ENSMUSG00000056076.13, intron 10 of 18) -4644 ENSMUSG00000056076.13 ENSMUSG00000056076 ENSMUST00000199377 Eif3b protein_coding Interval_16884 chr10 69475738 69476048 + 0 NA intron (ENSMUSG00000069601.14, intron 1 of 1) protein_coding-intron (ENSMUSG00000069601.14, intron 1 of 1) -52145 ENSMUSG00000111899.1 ENSMUSG00000111899 ENSMUST00000218846 Gm18636 processed_pseudogene Interval_123934 chr5 36730775 36731405 + 0 NA Intergenic Intergenic -17528 ENSMUSG00000107081.1 ENSMUSG00000107081 ENSMUST00000202047 Gm43701 antisense Interval_68644 chr16 82955515 82955761 + 0 NA Intergenic Intergenic 127256 ENSMUSG00000094030.1 ENSMUSG00000094030 ENSMUST00000177665 Gm21833 protein_coding Interval_60177 chr15 67018416 67019568 + 0 NA Intergenic Intergenic -21066 ENSMUSG00000116289.1 ENSMUSG00000116289 ENSMUST00000230911 Gm31342 lincRNA Interval_62644 chr15 95909968 95911333 + 0 NA intron (ENSMUSG00000064210.7, intron 4 of 20) protein_coding-intron (ENSMUSG00000064210.7, intron 3 of 19) -30833 ENSMUSG00000092978.1 ENSMUSG00000092978 ENSMUST00000175237 Gm25070 miRNA Interval_25624 chr11 50265793 50267647 + 0 NA exon (ENSMUSG00000050567.16, exon 2 of 5) protein_coding-exon (ENSMUSG00000050567.16, exon 2 of 5) 25084 ENSMUSG00000050567.16 ENSMUSG00000050567 ENSMUST00000059458 Maml1 protein_coding Interval_156307 chr8 47287538 47289594 + 0 NA exon (ENSMUSG00000038143.16, exon 1 of 4) protein_coding-exon (ENSMUSG00000038143.16, exon 1 of 4) -61400 ENSMUSG00000109606.1 ENSMUSG00000109606 ENSMUST00000211539 Gm45537 TEC Interval_87563 chr19 53459214 53461740 + 0 NA promoter-TSS (ENSMUSG00000097779.2) lincRNA-promoter-TSS (ENSMUSG00000097779.2) -145 ENSMUSG00000097779.2 ENSMUSG00000097779 ENSMUST00000180442 4833407H14Rik lincRNA Interval_91970 chr2 52091358 52092112 + 0 NA intron (ENSMUSG00000036202.16, intron 2 of 13) protein_coding-intron (ENSMUSG00000036202.16, intron 13 of 35) -20398 ENSMUSG00000036202.16 ENSMUSG00000036202 ENSMUST00000152178 Rif1 protein_coding Interval_51833 chr14 32597039 32598174 + 0 NA exon (ENSMUSG00000115281.1, exon 1 of 1) TEC-exon (ENSMUSG00000115281.1, exon 1 of 1) 2273 ENSMUSG00000115281.1 ENSMUSG00000115281 ENSMUST00000226540 Gm49743 TEC Interval_85082 chr19 22354048 22354370 + 0 NA intron (ENSMUSG00000052387.16, intron 1 of 24) protein_coding-intron (ENSMUSG00000052387.16, intron 1 of 24) -86926 ENSMUSG00000118353.1 ENSMUSG00000118353 ENSMUST00000235917 Nsa2-ps1 processed_pseudogene Interval_29238 chr11 81968138 81968946 + 0 NA promoter-TSS (ENSMUSG00000020704.13) protein_coding-promoter-TSS (ENSMUSG00000020704.13) -85 ENSMUSG00000020704.13 ENSMUSG00000020704 ENSMUST00000066197 Asic2 protein_coding Interval_70428 chr17 10149674 10151218 + 0 NA Intergenic Intergenic 168915 ENSMUSG00000062078.15 ENSMUSG00000062078 ENSMUST00000233684 Qk protein_coding Interval_157967 chr8 77395265 77395692 + 0 NA intron (ENSMUSG00000037148.8, intron 10 of 21) protein_coding-intron (ENSMUSG00000037148.8, intron 10 of 22) -22962 ENSMUSG00000109873.1 ENSMUSG00000109873 ENSMUST00000209499 Gm45407 TEC Interval_111503 chr4 22255661 22256161 + 0 NA Intergenic Intergenic -19922 ENSMUSG00000083376.1 ENSMUSG00000083376 ENSMUST00000121463 Gm11882 processed_pseudogene Interval_166789 chr9 62713918 62714652 + 0 NA intron (ENSMUSG00000032243.8, intron 2 of 27) protein_coding-intron (ENSMUSG00000032243.8, intron 2 of 29) 36425 ENSMUSG00000032243.8 ENSMUSG00000032243 ENSMUST00000159012 Itga11 protein_coding Interval_99205 chr2 158047823 158048367 + 0 NA exon (ENSMUSG00000027651.16, exon 4 of 4) protein_coding-exon (ENSMUSG00000027651.16, exon 4 of 4) 19403 ENSMUSG00000027651.16 ENSMUSG00000027651 ENSMUST00000135603 Rprd1b protein_coding Interval_148988 chr7 90820501 90820820 + 0 NA intron (ENSMUSG00000052572.19, intron 4 of 27) protein_coding-intron (ENSMUSG00000052572.19, intron 4 of 27) -8499 ENSMUSG00000109074.1 ENSMUSG00000109074 ENSMUST00000209013 Gm45162 processed_pseudogene Interval_12681 chr10 4303622 4304945 + 0 NA intron (ENSMUSG00000038587.10, intron 1 of 3) protein_coding-intron (ENSMUSG00000038587.10, intron 1 of 3) -30262 ENSMUSG00000038587.10 ENSMUSG00000038587 ENSMUST00000215696 Akap12 protein_coding Interval_39857 chr12 99131635 99133496 + 0 NA Intergenic Intergenic 30243 ENSMUSG00000113210.1 ENSMUSG00000113210 ENSMUST00000223511 4930474N09Rik lincRNA Interval_29628 chr11 85595315 85595525 + 0 NA intron (ENSMUSG00000059439.15, intron 13 of 14) protein_coding-intron (ENSMUSG00000059439.15, intron 23 of 24) 101661 ENSMUSG00000087779.1 ENSMUSG00000087779 ENSMUST00000157154 Gm23765 snRNA Interval_132362 chr5 144466400 144467608 + 0 NA Intergenic Intergenic 60402 ENSMUSG00000083574.1 ENSMUSG00000083574 ENSMUST00000118354 Gm15709 processed_pseudogene Interval_18111 chr10 82697361 82697658 + 0 NA intron (ENSMUSG00000020246.13, intron 1 of 3) protein_coding-intron (ENSMUSG00000020246.13, intron 1 of 3) -1702 ENSMUSG00000020246.13 ENSMUSG00000020246 ENSMUST00000160681 Hcfc2 protein_coding Interval_2162 chr1 36794094 36794319 + 0 NA intron (ENSMUSG00000026116.11, intron 40 of 41) protein_coding-intron (ENSMUSG00000026116.11, intron 39 of 40) 15222 ENSMUSG00000026117.10 ENSMUSG00000026117 ENSMUST00000190128 Zap70 protein_coding Interval_13027 chr10 9640819 9641523 + 0 NA intron (ENSMUSG00000060487.7, intron 1 of 1) protein_coding-intron (ENSMUSG00000060487.7, intron 1 of 1) -10230 ENSMUSG00000060487.7 ENSMUSG00000060487 ENSMUST00000221079 Samd5 protein_coding Interval_117259 chr4 121055631 121056718 + 0 NA TTS (ENSMUSG00000028626.5) protein_coding-TTS (ENSMUSG00000028626.5) 16426 ENSMUSG00000028626.5 ENSMUSG00000028626 ENSMUST00000140119 Col9a2 protein_coding Interval_29946 chr11 87972426 87973097 + 0 NA Intergenic Intergenic 11251 ENSMUSG00000020483.14 ENSMUSG00000020483 ENSMUST00000146941 Dynll2 protein_coding Interval_41121 chr12 111322814 111323013 + 0 NA exon (ENSMUSG00000021279.5, exon 11 of 37) protein_coding-exon (ENSMUSG00000021279.5, exon 11 of 37) -8376 ENSMUSG00000021279.5 ENSMUSG00000021279 ENSMUST00000222196 Cdc42bpb protein_coding Interval_108368 chr3 126044434 126044657 + 0 NA Intergenic Intergenic 108178 ENSMUSG00000087726.1 ENSMUSG00000087726 ENSMUST00000157101 Gm26275 misc_RNA Interval_115391 chr4 98500102 98500407 + 0 NA intron (ENSMUSG00000061859.17, intron 20 of 44) protein_coding-intron (ENSMUSG00000061859.17, intron 20 of 43) 57611 ENSMUSG00000094456.1 ENSMUSG00000094456 ENSMUST00000175382 Gm22625 miRNA Interval_76608 chr17 82384307 82384578 + 0 NA Intergenic Intergenic 26377 ENSMUSG00000117438.1 ENSMUSG00000117438 ENSMUST00000234808 Rpsa-ps7 processed_pseudogene Interval_154027 chr8 12023847 12024112 + 0 NA Intergenic Intergenic 75640 ENSMUSG00000109995.1 ENSMUSG00000109995 ENSMUST00000209977 B020031H02Rik lincRNA Interval_120587 chr4 149542867 149543560 + 0 NA intron (ENSMUSG00000028988.13, intron 2 of 4) protein_coding-intron (ENSMUSG00000028988.13, intron 2 of 4) -1904 ENSMUSG00000028988.13 ENSMUSG00000028988 ENSMUST00000105692 Ctnnbip1 protein_coding Interval_122446 chr5 22745582 22747572 + 0 NA exon (ENSMUSG00000105076.1, exon 1 of 1) lincRNA-exon (ENSMUSG00000105076.1, exon 1 of 1) 310 ENSMUSG00000105076.1 ENSMUSG00000105076 ENSMUST00000196218 A930003O13Rik lincRNA Interval_132025 chr5 142359284 142359802 + 0 NA Intergenic Intergenic -41954 ENSMUSG00000056493.9 ENSMUSG00000056493 ENSMUST00000072837 Foxk1 protein_coding Interval_15333 chr10 44678890 44679919 + 0 NA intron (ENSMUSG00000111535.1, intron 2 of 3) lincRNA-intron (ENSMUSG00000111535.1, intron 2 of 3) 11020 ENSMUSG00000098642.1 ENSMUSG00000098642 ENSMUST00000185159 Gm27977 rRNA Interval_138998 chr6 94136523 94137245 + 0 NA intron (ENSMUSG00000045095.16, intron 2 of 2) protein_coding-intron (ENSMUSG00000045095.16, intron 1 of 21) 187150 ENSMUSG00000107545.1 ENSMUSG00000107545 ENSMUST00000204466 Gm44307 processed_pseudogene Interval_144706 chr7 27646464 27647980 + 0 NA intron (ENSMUSG00000118518.1, intron 1 of 2) unitary_pseudogene-intron (ENSMUSG00000118518.1, intron 1 of 2) 3761 ENSMUSG00000108592.2 ENSMUSG00000108592 ENSMUST00000238805 Gm38973 lincRNA Interval_86408 chr19 40283263 40284210 + 0 NA Intergenic Intergenic 1459 ENSMUSG00000117793.1 ENSMUSG00000117793 ENSMUST00000237233 Gm5693 processed_pseudogene Interval_126239 chr5 83752710 83753099 + 0 NA Intergenic Intergenic -29315 ENSMUSG00000077474.1 ENSMUSG00000077474 ENSMUST00000104286 Gm24792 snoRNA Interval_103643 chr3 51365219 51365778 + 0 NA Intergenic Intergenic -4724 ENSMUSG00000103654.1 ENSMUSG00000103654 ENSMUST00000191618 Gm37203 processed_pseudogene Interval_59276 chr15 50670630 50670824 + 0 NA intron (ENSMUSG00000038679.16, intron 7 of 8) protein_coding-intron (ENSMUSG00000038679.16, intron 5 of 6) 218387 ENSMUSG00000084458.1 ENSMUSG00000084458 ENSMUST00000122509 Mir1907 miRNA Interval_15538 chr10 50902833 50903477 + 0 NA intron (ENSMUSG00000019913.4, intron 1 of 10) protein_coding-intron (ENSMUSG00000019913.4, intron 1 of 10) 8401 ENSMUSG00000019913.4 ENSMUSG00000019913 ENSMUST00000020071 Sim1 protein_coding Interval_164296 chr9 35111578 35112762 + 0 NA intron (ENSMUSG00000032038.7, intron 2 of 6) protein_coding-intron (ENSMUSG00000032038.7, intron 1 of 10) -4584 ENSMUSG00000070315.12 ENSMUSG00000070315 ENSMUST00000161136 4930581F22Rik processed_transcript Interval_45329 chr13 54468312 54469452 + 0 NA promoter-TSS (ENSMUSG00000025872.5) protein_coding-promoter-TSS (ENSMUSG00000025872.5) -94 ENSMUSG00000025872.5 ENSMUSG00000025872 ENSMUST00000135404 Thoc3 protein_coding Interval_118839 chr4 133976611 133976922 + 0 NA intron (ENSMUSG00000012117.13, intron 8 of 8) protein_coding-intron (ENSMUSG00000012117.13, intron 8 of 8) -8875 ENSMUSG00000003038.15 ENSMUSG00000003038 ENSMUST00000136859 Hmgn2 protein_coding Interval_94177 chr2 84870769 84872771 + 0 NA TTS (ENSMUSG00000050896.12) protein_coding-TTS (ENSMUSG00000050896.12) 14940 ENSMUSG00000050896.12 ENSMUSG00000050896 ENSMUST00000151759 Rtn4rl2 protein_coding Interval_35001 chr12 16567881 16568877 + 0 NA intron (ENSMUSG00000020593.16, intron 7 of 21) protein_coding-intron (ENSMUSG00000020593.16, intron 7 of 20) 42587 ENSMUSG00000020593.16 ENSMUSG00000020593 ENSMUST00000221146 Lpin1 protein_coding Interval_124618 chr5 52470676 52471845 + 0 NA intron (ENSMUSG00000045790.10, intron 1 of 4) protein_coding-intron (ENSMUSG00000045790.10, intron 1 of 11) 30101 ENSMUSG00000106380.1 ENSMUSG00000106380 ENSMUST00000196113 Gm3519 antisense Interval_99423 chr2 160942317 160943046 + 0 NA Intergenic Intergenic -16033 ENSMUSG00000087147.1 ENSMUSG00000087147 ENSMUST00000131908 Gm14228 lincRNA Interval_58724 chr15 37354590 37354837 + 0 NA intron (ENSMUSG00000022286.16, intron 7 of 8) protein_coding-intron (ENSMUSG00000022286.16, intron 14 of 15) -12492 ENSMUSG00000101671.1 ENSMUSG00000101671 ENSMUST00000185617 Gm28221 antisense Interval_131181 chr5 135642573 135644649 + 0 NA TTS (ENSMUSG00000094372.1) pseudogene-TTS (ENSMUSG00000094372.1) 725 ENSMUSG00000094372.1 ENSMUSG00000094372 ENSMUST00000179536 Gm21839 pseudogene Interval_170210 chr9 106225729 106226883 + 0 NA exon (ENSMUSG00000045322.10, exon 2 of 2) protein_coding-exon (ENSMUSG00000045322.10, exon 2 of 2) 3708 ENSMUSG00000045322.10 ENSMUSG00000045322 ENSMUST00000062241 Tlr9 protein_coding Interval_11836 chr1 186110117 186110702 + 0 NA intron (ENSMUSG00000039246.8, intron 2 of 4) protein_coding-intron (ENSMUSG00000039246.8, intron 2 of 4) 1964 ENSMUSG00000103056.1 ENSMUSG00000103056 ENSMUST00000195813 Gm38268 TEC Interval_16953 chr10 70107962 70108266 + 0 NA intron (ENSMUSG00000048701.13, intron 1 of 8) protein_coding-intron (ENSMUSG00000048701.13, intron 1 of 8) -66897 ENSMUSG00000048701.13 ENSMUSG00000048701 ENSMUST00000135607 Ccdc6 protein_coding Interval_12652 chr10 4160362 4160578 + 0 NA intron (ENSMUSG00000040675.17, intron 27 of 27) protein_coding-intron (ENSMUSG00000040675.17, intron 27 of 27) -9417 ENSMUSG00000089473.1 ENSMUSG00000089473 ENSMUST00000158848 Gm25369 snoRNA Interval_152123 chr7 129664097 129664565 + 0 NA intron (ENSMUSG00000108580.1, intron 3 of 3) lincRNA-intron (ENSMUSG00000108580.1, intron 3 of 3) -3074 ENSMUSG00000108481.1 ENSMUSG00000108481 ENSMUST00000205836 Gm33248 sense_intronic Interval_59179 chr15 46718768 46719092 + 0 NA Intergenic Intergenic 95625 ENSMUSG00000051198.6 ENSMUSG00000051198 ENSMUST00000060825 4930548G14Rik lincRNA Interval_153843 chr8 9580393 9580780 + 0 NA intron (ENSMUSG00000079157.4, intron 1 of 3) protein_coding-intron (ENSMUSG00000079157.4, intron 1 of 2) -12337 ENSMUSG00000064618.1 ENSMUSG00000064618 ENSMUST00000082684 n-R5s95 rRNA Interval_49975 chr13 119185821 119186049 + 0 NA Intergenic Intergenic 83669 ENSMUSG00000105411.1 ENSMUSG00000105411 ENSMUST00000199467 Gm44488 miRNA Interval_161464 chr8 120577996 120578439 + 0 NA TTS (ENSMUSG00000031821.11) protein_coding-TTS (ENSMUSG00000031821.11) 7991 ENSMUSG00000031821.11 ENSMUSG00000031821 ENSMUST00000126094 Gins2 protein_coding Interval_78668 chr18 16669995 16671185 + 0 NA promoter-TSS (ENSMUSG00000024304.14) protein_coding-promoter-TSS (ENSMUSG00000024304.14) -58143 ENSMUSG00000085575.1 ENSMUSG00000085575 ENSMUST00000149095 Gm15485 antisense Interval_138735 chr6 91523518 91523747 + 0 NA intron (ENSMUSG00000108584.1, intron 1 of 3) sense_overlapping-intron (ENSMUSG00000108584.1, intron 1 of 3) 1223 ENSMUSG00000108584.1 ENSMUSG00000108584 ENSMUST00000205547 Gm45216 sense_overlapping Interval_152150 chr7 130182482 130182710 + 0 NA intron (ENSMUSG00000030849.18, intron 10 of 16) protein_coding-intron (ENSMUSG00000030849.18, intron 8 of 14) 83659 ENSMUSG00000030849.18 ENSMUSG00000030849 ENSMUST00000208844 Fgfr2 protein_coding Interval_41640 chr12 117296446 117297299 + 0 NA intron (ENSMUSG00000101930.1, intron 1 of 1) antisense-intron (ENSMUSG00000101930.1, intron 1 of 1) 40140 ENSMUSG00000101930.1 ENSMUSG00000101930 ENSMUST00000186454 Gm5441 antisense Interval_133676 chr6 8427844 8428153 + 0 NA TTS (ENSMUSG00000089862.8) protein_coding-TTS (ENSMUSG00000089862.8) -11355 ENSMUSG00000088118.1 ENSMUSG00000088118 ENSMUST00000157493 Gm24059 misc_RNA Interval_1143 chr1 16098619 16099370 + 0 NA Intergenic Intergenic 3854 ENSMUSG00000043716.13 ENSMUSG00000043716 ENSMUST00000125005 Rpl7 protein_coding Interval_31314 chr11 99640147 99640360 + 0 NA Intergenic Intergenic 3836 ENSMUSG00000045109.6 ENSMUSG00000045109 ENSMUST00000055121 Krtap4-7 protein_coding Interval_126424 chr5 88402496 88403377 + 0 NA Intergenic Intergenic -20279 ENSMUSG00000106633.1 ENSMUSG00000106633 ENSMUST00000198577 Gm43431 processed_pseudogene Interval_134863 chr6 32786093 32787846 + 0 NA Intergenic Intergenic -34681 ENSMUSG00000106873.1 ENSMUSG00000106873 ENSMUST00000202626 BC049739 lincRNA Interval_35756 chr12 28912090 28912571 + 0 NA intron (ENSMUSG00000113387.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000113387.1, intron 1 of 2) 2101 ENSMUSG00000113387.1 ENSMUSG00000113387 ENSMUST00000221643 Gm31508 lincRNA Interval_172475 chrX 20909809 20911633 + 0 NA promoter-TSS (ENSMUSG00000080757.1) processed_pseudogene-promoter-TSS (ENSMUSG00000080757.1) -875 ENSMUSG00000080757.1 ENSMUSG00000080757 ENSMUST00000119742 Gm15029 processed_pseudogene Interval_93589 chr2 74687439 74688169 + 0 NA TTS (ENSMUSG00000042499.13) protein_coding-TTS (ENSMUSG00000042499.13) -4120 ENSMUSG00000050368.4 ENSMUSG00000050368 ENSMUST00000061745 Hoxd10 protein_coding Interval_157801 chr8 73352513 73354756 + 0 NA promoter-TSS (ENSMUSG00000004383.18) protein_coding-promoter-TSS (ENSMUSG00000004383.18) -94 ENSMUSG00000004383.18 ENSMUSG00000004383 ENSMUST00000146249 Large1 protein_coding Interval_70442 chr17 10264142 10264590 + 0 NA intron (ENSMUSG00000062078.15, intron 1 of 4) protein_coding-intron (ENSMUSG00000062078.15, intron 3 of 6) 54995 ENSMUSG00000062078.15 ENSMUSG00000062078 ENSMUST00000233684 Qk protein_coding Interval_89748 chr2 25203520 25204199 + 0 NA promoter-TSS (ENSMUSG00000013465.19) protein_coding-promoter-TSS (ENSMUSG00000013465.19) -4764 ENSMUSG00000064919.1 ENSMUSG00000064919 ENSMUST00000082985 Gm22572 snRNA Interval_12197 chr1 190783833 190785090 + 0 NA intron (ENSMUSG00000089872.10, intron 3 of 5) protein_coding-intron (ENSMUSG00000089872.10, intron 12 of 14) 115256 ENSMUSG00000089872.10 ENSMUSG00000089872 ENSMUST00000159066 Rps6kc1 protein_coding Interval_174316 chrX 144337837 144338766 + 0 NA promoter-TSS (ENSMUSG00000041718.16) protein_coding-promoter-TSS (ENSMUSG00000041718.16) -17046 ENSMUSG00000080922.1 ENSMUSG00000080922 ENSMUST00000121333 Gm2214 processed_pseudogene Interval_20295 chr10 116710570 116710982 + 0 NA Intergenic Intergenic 18401 ENSMUSG00000100198.1 ENSMUSG00000100198 ENSMUST00000185546 1700030O20Rik lincRNA Interval_173993 chrX 127093171 127093538 + 0 NA Intergenic Intergenic 53382 ENSMUSG00000062791.4 ENSMUSG00000062791 ENSMUST00000096332 Gm382 protein_coding Interval_74349 chr17 49231616 49232599 + 0 NA Intergenic Intergenic -60635 ENSMUSG00000064541.1 ENSMUSG00000064541 ENSMUST00000082607 Gm22978 snRNA Interval_50281 chr14 11619374 11621651 + 0 NA intron (ENSMUSG00000021745.14, intron 1 of 3) protein_coding-intron (ENSMUSG00000021745.14, intron 1 of 29) -99742 ENSMUSG00000114849.1 ENSMUSG00000114849 ENSMUST00000224543 Gm48595 lincRNA Interval_119227 chr4 136324476 136324738 + 0 NA intron (ENSMUSG00000066037.14, intron 5 of 10) protein_coding-intron (ENSMUSG00000066037.14, intron 4 of 9) -14412 ENSMUSG00000066037.14 ENSMUSG00000066037 ENSMUST00000180855 Hnrnpr protein_coding Interval_2205 chr1 37009803 37010647 + 0 NA Intergenic Intergenic 4786 ENSMUSG00000095944.1 ENSMUSG00000095944 ENSMUST00000177688 n-R5s210 rRNA Interval_58867 chr15 39403323 39403893 + 0 NA intron (ENSMUSG00000037386.16, intron 1 of 2) protein_coding-intron (ENSMUSG00000037386.16, intron 3 of 26) -33630 ENSMUSG00000037386.16 ENSMUSG00000037386 ENSMUST00000226410 Rims2 protein_coding Interval_66934 chr16 38608798 38609843 + 0 NA exon (ENSMUSG00000022799.4, exon 10 of 12) protein_coding-exon (ENSMUSG00000022799.4, exon 10 of 12) -36020 ENSMUSG00000091238.1 ENSMUSG00000091238 ENSMUST00000168897 Gm17103 antisense Interval_33404 chr11 116371132 116372558 + 0 NA intron (ENSMUSG00000052949.14, intron 2 of 17) protein_coding-intron (ENSMUSG00000052949.14, intron 2 of 18) -10905 ENSMUSG00000081929.1 ENSMUSG00000081929 ENSMUST00000121547 Rps11-ps2 processed_pseudogene Interval_79081 chr18 24392808 24396260 + 0 NA Intergenic Intergenic 34636 ENSMUSG00000065532.1 ENSMUSG00000065532 ENSMUST00000083598 Mir187 miRNA Interval_12867 chr10 7068366 7069241 + 0 NA Intergenic Intergenic 30142 ENSMUSG00000081926.1 ENSMUSG00000081926 ENSMUST00000121411 Gm15536 processed_pseudogene Interval_50206 chr14 9695363 9696073 + 0 NA intron (ENSMUSG00000060579.13, intron 4 of 5) protein_coding-intron (ENSMUSG00000060579.13, intron 8 of 9) -167384 ENSMUSG00000089795.1 ENSMUSG00000089795 ENSMUST00000162465 Hmgb3-ps processed_pseudogene Interval_151188 chr7 119204890 119206354 + 0 NA Intergenic Intergenic -21019 ENSMUSG00000066197.5 ENSMUSG00000066197 ENSMUST00000084650 Gpr139 protein_coding Interval_22140 chr11 6578468 6580641 + 0 NA intron (ENSMUSG00000000378.15, intron 2 of 4) protein_coding-intron (ENSMUSG00000000378.15, intron 2 of 9) -13494 ENSMUSG00000000378.15 ENSMUSG00000000378 ENSMUST00000161667 Ccm2 protein_coding Interval_112037 chr4 33396213 33396954 + 0 NA intron (ENSMUSG00000028274.17, intron 12 of 15) protein_coding-intron (ENSMUSG00000028274.17, intron 12 of 15) -41498 ENSMUSG00000098310.1 ENSMUSG00000098310 ENSMUST00000183962 Mir8118 miRNA Interval_103177 chr3 36352115 36352598 + 0 NA Intergenic Intergenic 42841 ENSMUSG00000105281.1 ENSMUSG00000105281 ENSMUST00000196870 Gm17835 processed_pseudogene Interval_113896 chr4 59687026 59687869 + 0 NA intron (ENSMUSG00000045071.14, intron 1 of 3) protein_coding-intron (ENSMUSG00000045071.14, intron 1 of 2) -45811 ENSMUSG00000045071.14 ENSMUSG00000045071 ENSMUST00000221633 E130308A19Rik protein_coding Interval_31019 chr11 97738585 97739388 + 0 NA intron (ENSMUSG00000018547.8, intron 1 of 9) protein_coding-intron (ENSMUSG00000018547.8, intron 1 of 9) -5911 ENSMUSG00000098919.1 ENSMUSG00000098919 ENSMUST00000184148 Mir8102 miRNA Interval_43923 chr13 38070441 38071239 + 0 NA Intergenic Intergenic -15362 ENSMUSG00000098481.1 ENSMUSG00000098481 ENSMUST00000184583 Gm27387 miRNA Interval_45873 chr13 58663297 58663789 + 0 NA Intergenic Intergenic 5296 ENSMUSG00000114380.1 ENSMUSG00000114380 ENSMUST00000225253 Gm47942 processed_pseudogene Interval_92594 chr2 61058944 61059711 + 0 NA Intergenic Intergenic -28357 ENSMUSG00000083334.1 ENSMUSG00000083334 ENSMUST00000118519 Gm13579 processed_pseudogene Interval_77059 chr17 86132523 86132770 + 0 NA intron (ENSMUSG00000024135.10, intron 4 of 20) protein_coding-intron (ENSMUSG00000024135.10, intron 4 of 20) -42929 ENSMUSG00000117546.1 ENSMUSG00000117546 ENSMUST00000234087 AC154542.1 TEC Interval_125764 chr5 73960317 73960873 + 0 NA Intergenic Intergenic 14214 ENSMUSG00000106968.1 ENSMUSG00000106968 ENSMUST00000202711 C78283 lincRNA Interval_13718 chr10 21372725 21372942 + 0 NA Intergenic Intergenic -4467 ENSMUSG00000037542.13 ENSMUSG00000037542 ENSMUST00000159163 Aldh8a1 protein_coding Interval_39679 chr12 92109246 92110337 + 0 NA Intergenic Intergenic 51648 ENSMUSG00000113643.1 ENSMUSG00000113643 ENSMUST00000222953 Gm40598 processed_pseudogene Interval_14000 chr10 25386995 25387607 + 0 NA intron (ENSMUSG00000019978.16, intron 1 of 17) protein_coding-intron (ENSMUSG00000019978.16, intron 1 of 19) 28884 ENSMUSG00000112445.1 ENSMUSG00000112445 ENSMUST00000219193 Gm47830 processed_pseudogene Interval_15724 chr10 54773609 54773828 + 0 NA Intergenic Intergenic -60681 ENSMUSG00000088987.1 ENSMUSG00000088987 ENSMUST00000158362 Gm25602 snRNA Interval_127259 chr5 101937136 101938103 + 0 NA promoter-TSS (ENSMUSG00000043940.15) protein_coding-promoter-TSS (ENSMUSG00000043940.15) -18988 ENSMUSG00000106451.1 ENSMUSG00000106451 ENSMUST00000196920 Gm42934 TEC Interval_31831 chr11 103199019 103200063 + 0 NA TTS (ENSMUSG00000055805.15) protein_coding-TTS (ENSMUSG00000055805.15) -6645 ENSMUSG00000092371.1 ENSMUSG00000092371 ENSMUST00000174079 Gm20511 antisense Interval_119927 chr4 140976667 140977707 + 0 NA TTS (ENSMUSG00000009863.14) protein_coding-TTS (ENSMUSG00000009863.14) 15786 ENSMUSG00000009863.14 ENSMUSG00000009863 ENSMUST00000125780 Sdhb protein_coding Interval_161647 chr8 121789037 121790054 + 0 NA TTS (ENSMUSG00000025318.13) protein_coding-TTS (ENSMUSG00000025318.13) -16870 ENSMUSG00000092418.1 ENSMUSG00000092418 ENSMUST00000173993 Gm20406 antisense Interval_22359 chr11 9105600 9106022 + 0 NA Intergenic Intergenic -12976 ENSMUSG00000020407.13 ENSMUSG00000020407 ENSMUST00000146696 Upp1 protein_coding Interval_58516 chr15 35407950 35409290 + 0 NA intron (ENSMUSG00000037646.10, intron 4 of 8) protein_coding-intron (ENSMUSG00000037646.10, intron 3 of 61) -35473 ENSMUSG00000115829.1 ENSMUSG00000115829 ENSMUST00000228236 Gm48960 antisense Interval_146298 chr7 45197891 45199006 + 0 NA intron (ENSMUSG00000038292.14, intron 2 of 19) protein_coding-intron (ENSMUSG00000038292.14, intron 2 of 19) -8382 ENSMUSG00000038292.14 ENSMUSG00000038292 ENSMUST00000211277 Ccdc155 protein_coding Interval_56529 chr14 120061065 120062214 + 0 NA Intergenic Intergenic -15871 ENSMUSG00000115133.1 ENSMUSG00000115133 ENSMUST00000226914 Gm20167 processed_pseudogene Interval_41022 chr12 110665266 110666099 + 0 NA promoter-TSS (ENSMUSG00000090327.1) antisense-promoter-TSS (ENSMUSG00000090327.1) -274 ENSMUSG00000090327.1 ENSMUSG00000090327 ENSMUST00000169981 Gm17111 antisense Interval_3298 chr1 55884549 55884788 + 0 NA Intergenic Intergenic -46573 ENSMUSG00000099950.1 ENSMUSG00000099950 ENSMUST00000188040 9130227L01Rik lincRNA Interval_124920 chr5 60700495 60700686 + 0 NA Intergenic Intergenic 16849 ENSMUSG00000077555.1 ENSMUSG00000077555 ENSMUST00000104367 Gm23708 snoRNA Interval_5685 chr1 90906418 90906904 + 0 NA Intergenic Intergenic -32508 ENSMUSG00000026303.6 ENSMUSG00000026303 ENSMUST00000136220 Mlph protein_coding Interval_76551 chr17 81000485 81001878 + 0 NA exon (ENSMUSG00000024245.4, exon 4 of 4) protein_coding-exon (ENSMUSG00000024245.4, exon 4 of 4) 56549 ENSMUSG00000024245.4 ENSMUSG00000024245 ENSMUST00000025092 Tmem178 protein_coding Interval_3749 chr1 62759786 62760692 + 0 NA intron (ENSMUSG00000025969.15, intron 7 of 16) protein_coding-intron (ENSMUSG00000025969.15, intron 7 of 15) -42166 ENSMUSG00000100811.1 ENSMUSG00000100811 ENSMUST00000189205 Gm29083 antisense Interval_83260 chr18 83067181 83067532 + 0 NA intron (ENSMUSG00000118094.1, intron 4 of 6) processed_transcript-intron (ENSMUSG00000118094.1, intron 4 of 6) 40504 ENSMUSG00000100430.2 ENSMUSG00000100430 ENSMUST00000236396 1700095A13Rik lincRNA Interval_114394 chr4 74896127 74896362 + 0 NA Intergenic Intergenic 185456 ENSMUSG00000082533.1 ENSMUSG00000082533 ENSMUST00000118486 Gm11253 processed_pseudogene Interval_156580 chr8 52903854 52904215 + 0 NA Intergenic Intergenic -102374 ENSMUSG00000088678.1 ENSMUSG00000088678 ENSMUST00000158053 Gm23666 snoRNA Interval_96092 chr2 119715933 119716122 + 0 NA intron (ENSMUSG00000027304.9, intron 6 of 17) protein_coding-intron (ENSMUSG00000027304.9, intron 6 of 17) 5031 ENSMUSG00000027304.9 ENSMUSG00000027304 ENSMUST00000126984 Rtf1 protein_coding Interval_55589 chr14 94046167 94047034 + 0 NA Intergenic Intergenic 64458 ENSMUSG00000115797.1 ENSMUSG00000115797 ENSMUST00000227233 Gm48981 processed_pseudogene Interval_62646 chr15 95940847 95941564 + 0 NA exon (ENSMUSG00000064210.7, exon 1 of 2) protein_coding-exon (ENSMUSG00000064210.7, exon 1 of 2) 52924 ENSMUSG00000115049.1 ENSMUSG00000115049 ENSMUST00000227616 Gm49172 processed_transcript Interval_41581 chr12 116512738 116512955 + 0 NA intron (ENSMUSG00000056553.14, intron 1 of 4) protein_coding-intron (ENSMUSG00000056553.14, intron 1 of 22) -4963 ENSMUSG00000101236.1 ENSMUSG00000101236 ENSMUST00000189273 Gm6750 processed_pseudogene Interval_86650 chr19 42294243 42294476 + 0 NA intron (ENSMUSG00000042401.8, intron 11 of 14) protein_coding-intron (ENSMUSG00000042401.8, intron 11 of 14) -14189 ENSMUSG00000093234.1 ENSMUSG00000093234 ENSMUST00000175493 Mir3085 miRNA Interval_72298 chr17 29030772 29030992 + 0 NA TTS (ENSMUSG00000086154.2) bidirectional_promoter_lncRNA-TTS (ENSMUSG00000086154.2) 1686 ENSMUSG00000086154.2 ENSMUSG00000086154 ENSMUST00000233751 Gm16196 bidirectional_promoter_lncRNA Interval_148970 chr7 90525708 90527961 + 0 NA intron (ENSMUSG00000052572.19, intron 3 of 27) protein_coding-intron (ENSMUSG00000052572.19, intron 3 of 27) -50839 ENSMUSG00000030614.8 ENSMUSG00000030614 ENSMUST00000123622 Tmem126b protein_coding Interval_126493 chr5 89083519 89084255 + 0 NA intron (ENSMUSG00000060961.16, intron 7 of 25) protein_coding-intron (ENSMUSG00000060961.16, intron 6 of 24) 197401 ENSMUSG00000060961.16 ENSMUSG00000060961 ENSMUST00000134303 Slc4a4 protein_coding Interval_42862 chr13 20556167 20557180 + 0 NA intron (ENSMUSG00000041112.17, intron 1 of 4) protein_coding-intron (ENSMUSG00000041112.17, intron 16 of 21) 51878 ENSMUSG00000113557.1 ENSMUSG00000113557 ENSMUST00000220999 Gm47657 TEC Interval_125847 chr5 74974107 74975266 + 0 NA Intergenic Intergenic 14380 ENSMUSG00000107306.1 ENSMUSG00000107306 ENSMUST00000201367 Gm42577 TEC Interval_36104 chr12 35850542 35850796 + 0 NA Intergenic Intergenic -31405 ENSMUSG00000114090.1 ENSMUSG00000114090 ENSMUST00000221625 Gm9472 processed_pseudogene Interval_65312 chr16 21433386 21434377 + 0 NA intron (ENSMUSG00000033653.18, intron 1 of 1) protein_coding-intron (ENSMUSG00000033653.18, intron 1 of 43) -99231 ENSMUSG00000033653.18 ENSMUSG00000033653 ENSMUST00000127903 Vps8 protein_coding Interval_11179 chr1 179864770 179864977 + 0 NA Intergenic Intergenic 60538 ENSMUSG00000104418.1 ENSMUSG00000104418 ENSMUST00000193272 Gm37070 processed_pseudogene Interval_102248 chr3 19986160 19986550 + 0 NA TTS (ENSMUSG00000003617.16) protein_coding-TTS (ENSMUSG00000003617.16) 15470 ENSMUSG00000003617.16 ENSMUSG00000003617 ENSMUST00000173779 Cp protein_coding Interval_71355 chr17 22594926 22595378 + 0 NA Intergenic Intergenic -5799 ENSMUSG00000094921.2 ENSMUSG00000094921 ENSMUST00000234826 Vmn2r112 protein_coding Interval_87465 chr19 52476729 52476943 + 0 NA Intergenic Intergenic 139671 ENSMUSG00000118114.1 ENSMUSG00000118114 ENSMUST00000236031 Gm50332 lincRNA Interval_77887 chr18 5033683 5033905 + 0 NA intron (ENSMUSG00000024236.18, intron 1 of 37) protein_coding-intron (ENSMUSG00000024236.18, intron 1 of 37) -1372 ENSMUSG00000024236.18 ENSMUSG00000024236 ENSMUST00000129543 Svil protein_coding Interval_173124 chrX 72960589 72960820 + 0 NA Intergenic Intergenic -21119 ENSMUSG00000084944.1 ENSMUSG00000084944 ENSMUST00000145722 Gm14684 lincRNA Interval_100258 chr2 168009877 168010479 + 0 NA promoter-TSS (ENSMUSG00000086411.1) antisense-promoter-TSS (ENSMUSG00000086411.1) -351 ENSMUSG00000086411.1 ENSMUSG00000086411 ENSMUST00000142374 Gm14236 antisense Interval_60252 chr15 70082590 70083036 + 0 NA Intergenic Intergenic -18144 ENSMUSG00000116398.1 ENSMUSG00000116398 ENSMUST00000231025 Gm5216 processed_pseudogene Interval_118595 chr4 132694702 132694916 + 0 NA TTS (ENSMUSG00000028886.15) protein_coding-TTS (ENSMUSG00000028886.15) 37719 ENSMUSG00000037752.4 ENSMUSG00000037752 ENSMUST00000143642 Xkr8 protein_coding Interval_83685 chr19 3718693 3719881 + 0 NA intron (ENSMUSG00000117739.1, intron 1 of 1) antisense-intron (ENSMUSG00000117739.1, intron 1 of 1) 286 ENSMUSG00000117739.1 ENSMUSG00000117739 ENSMUST00000237981 Gm36787 antisense Interval_1311 chr1 20289922 20290135 + 0 NA intron (ENSMUSG00000043760.16, intron 50 of 66) protein_coding-intron (ENSMUSG00000043760.16, intron 50 of 66) -66424 ENSMUSG00000089914.2 ENSMUSG00000089914 ENSMUST00000161509 4930486I03Rik antisense Interval_124103 chr5 38319010 38320528 + 0 NA exon (ENSMUSG00000039358.3, exon 1 of 1) protein_coding-exon (ENSMUSG00000039358.3, exon 1 of 1) 402 ENSMUSG00000039358.3 ENSMUSG00000039358 ENSMUST00000041646 Drd5 protein_coding Interval_126670 chr5 91962274 91963598 + 0 NA promoter-TSS (ENSMUSG00000029397.15) protein_coding-promoter-TSS (ENSMUSG00000029397.15) -210 ENSMUSG00000029397.15 ENSMUSG00000029397 ENSMUST00000200905 Rchy1 protein_coding Interval_28411 chr11 75708330 75708827 + 0 NA Intergenic Intergenic 29036 ENSMUSG00000017776.15 ENSMUSG00000017776 ENSMUST00000147718 Crk protein_coding Interval_157399 chr8 70122861 70123320 + 0 NA promoter-TSS (ENSMUSG00000089114.1) snoRNA-promoter-TSS (ENSMUSG00000089114.1) 63 ENSMUSG00000089114.1 ENSMUSG00000089114 ENSMUST00000158489 Gm25906 snoRNA Interval_45353 chr13 54621364 54622710 + 0 NA intron (ENSMUSG00000025873.16, intron 1 of 2) protein_coding-intron (ENSMUSG00000025873.16, intron 1 of 10) 236 ENSMUSG00000025873.16 ENSMUSG00000025873 ENSMUST00000141915 Faf2 protein_coding Interval_142619 chr6 144326520 144327620 + 0 NA intron (ENSMUSG00000041540.16, intron 4 of 6) protein_coding-intron (ENSMUSG00000041540.16, intron 4 of 13) -117502 ENSMUSG00000041540.16 ENSMUSG00000041540 ENSMUST00000150087 Sox5 protein_coding Interval_27086 chr11 62788719 62789801 + 0 NA promoter-TSS (ENSMUSG00000047342.17) protein_coding-promoter-TSS (ENSMUSG00000047342.17) 161 ENSMUSG00000047342.17 ENSMUSG00000047342 ENSMUST00000149215 Zfp286 protein_coding Interval_1432 chr1 23263963 23264296 + 0 NA Intergenic Intergenic -7723 ENSMUSG00000102766.1 ENSMUSG00000102766 ENSMUST00000195365 Gm6420 TEC Interval_75599 chr17 69195764 69197151 + 0 NA intron (ENSMUSG00000024044.19, intron 1 of 19) protein_coding-intron (ENSMUSG00000024044.19, intron 1 of 21) 69457 ENSMUSG00000024044.19 ENSMUSG00000024044 ENSMUST00000223565 Epb41l3 protein_coding Interval_99027 chr2 156729766 156732494 + 0 NA intron (ENSMUSG00000061689.15, intron 1 of 6) protein_coding-intron (ENSMUSG00000061689.15, intron 1 of 6) 10070 ENSMUSG00000061689.15 ENSMUSG00000061689 ENSMUST00000123730 Dlgap4 protein_coding Interval_17289 chr10 75609083 75610691 + 0 NA TTS (ENSMUSG00000006344.17) protein_coding-TTS (ENSMUSG00000006344.17) 3382 ENSMUSG00000089124.1 ENSMUSG00000089124 ENSMUST00000158499 Gm26402 snRNA Interval_51857 chr14 33030394 33030876 + 0 NA intron (ENSMUSG00000051506.17, intron 43 of 61) protein_coding-intron (ENSMUSG00000051506.17, intron 40 of 58) 35370 ENSMUSG00000041673.12 ENSMUSG00000041673 ENSMUST00000123910 Lrrc18 protein_coding Interval_97950 chr2 146062037 146063819 + 0 NA intron (ENSMUSG00000037143.17, intron 1 of 10) protein_coding-intron (ENSMUSG00000037143.17, intron 1 of 6) -128214 ENSMUSG00000001767.5 ENSMUSG00000001767 ENSMUST00000147904 Crnkl1 protein_coding Interval_30412 chr11 94209939 94212647 + 0 NA promoter-TSS (ENSMUSG00000037573.5) protein_coding-promoter-TSS (ENSMUSG00000037573.5) -161 ENSMUSG00000037573.5 ENSMUSG00000037573 ENSMUST00000041589 Tob1 protein_coding Interval_1024 chr1 14181523 14182184 + 0 NA promoter-TSS (ENSMUSG00000095853.1) miRNA-promoter-TSS (ENSMUSG00000095853.1) -725 ENSMUSG00000095853.1 ENSMUSG00000095853 ENSMUST00000179783 Gm22616 miRNA Interval_106903 chr3 101738085 101738510 + 0 NA Intergenic Intergenic -9827 ENSMUSG00000105642.1 ENSMUSG00000105642 ENSMUST00000199434 Gm43134 lincRNA Interval_72550 chr17 30628668 30629724 + 0 NA intron (ENSMUSG00000033826.10, intron 1 of 1) protein_coding-intron (ENSMUSG00000033826.10, intron 1 of 92) -2291 ENSMUSG00000099474.1 ENSMUSG00000099474 ENSMUST00000188852 1700097N02Rik bidirectional_promoter_lncRNA Interval_171971 chr9 123079870 123080209 + 0 NA TTS (ENSMUSG00000025786.17) protein_coding-TTS (ENSMUSG00000025786.17) 33108 ENSMUSG00000025786.17 ENSMUSG00000025786 ENSMUST00000130717 Zdhhc3 protein_coding Interval_146905 chr7 55737285 55738160 + 0 NA Intergenic Intergenic -30514 ENSMUSG00000051504.18 ENSMUSG00000051504 ENSMUST00000154933 Siglech protein_coding Interval_133008 chr5 149259042 149259903 + 0 NA Intergenic Intergenic -11228 ENSMUSG00000092674.2 ENSMUSG00000092674 ENSMUST00000174933 Gm24105 misc_RNA Interval_30364 chr11 93896966 93897314 + 0 NA intron (ENSMUSG00000059474.13, intron 3 of 7) protein_coding-intron (ENSMUSG00000059474.13, intron 1 of 11) -20997 ENSMUSG00000054079.12 ENSMUSG00000054079 ENSMUST00000134807 Utp18 protein_coding Interval_6464 chr1 110659274 110660202 + 0 NA Intergenic Intergenic 59717 ENSMUSG00000099926.1 ENSMUSG00000099926 ENSMUST00000189583 Gm6693 processed_pseudogene Interval_112967 chr4 46506637 46508310 + 0 NA TTS (ENSMUSG00000039853.18) protein_coding-TTS (ENSMUSG00000039853.18) 12318 ENSMUSG00000064410.1 ENSMUSG00000064410 ENSMUST00000082476 Gm22247 snoRNA Interval_165975 chr9 55114808 55115763 + 0 NA Intergenic Intergenic -19915 ENSMUSG00000110793.1 ENSMUSG00000110793 ENSMUST00000216059 Gm7395 processed_pseudogene Interval_90671 chr2 31792768 31793022 + 0 NA intron (ENSMUSG00000026842.16, intron 8 of 11) protein_coding-intron (ENSMUSG00000026842.16, intron 7 of 10) 17685 ENSMUSG00000043102.2 ENSMUSG00000043102 ENSMUST00000057407 Qrfp protein_coding Interval_1265 chr1 18695181 18696797 + 0 NA Intergenic Intergenic -12439 ENSMUSG00000101306.1 ENSMUSG00000101306 ENSMUST00000189030 Gm5252 processed_pseudogene Interval_60100 chr15 65570951 65571735 + 0 NA Intergenic Intergenic 116805 ENSMUSG00000115402.1 ENSMUSG00000115402 ENSMUST00000227091 Gm49243 processed_pseudogene Interval_73512 chr17 38460135 38460415 + 0 NA Intergenic Intergenic -17140 ENSMUSG00000092566.1 ENSMUSG00000092566 ENSMUST00000173457 Gm20409 processed_pseudogene Interval_100430 chr2 168968260 168971859 + 0 NA Intergenic Intergenic -8209 ENSMUSG00000086348.1 ENSMUSG00000086348 ENSMUST00000140241 1700017J07Rik lincRNA Interval_149916 chr7 102597490 102598625 + 0 NA intron (ENSMUSG00000073973.4, intron 1 of 2) protein_coding-intron (ENSMUSG00000073973.4, intron 1 of 2) 287 ENSMUSG00000073973.4 ENSMUSG00000073973 ENSMUST00000098223 Olfr552 protein_coding Interval_33112 chr11 114523027 114524310 + 0 NA Intergenic Intergenic -74808 ENSMUSG00000062391.3 ENSMUSG00000062391 ENSMUST00000141088 4932435O22Rik lincRNA Interval_53390 chr14 56849621 56849831 + 0 NA Intergenic Intergenic 3090 ENSMUSG00000087941.2 ENSMUSG00000087941 ENSMUST00000157316 Gm27635 snRNA Interval_24492 chr11 33707056 33707882 + 0 NA intron (ENSMUSG00000087328.1, intron 1 of 1) protein_coding-intron (ENSMUSG00000053519.17, intron 1 of 7) 1919 ENSMUSG00000087328.1 ENSMUSG00000087328 ENSMUST00000125068 Gm12120 antisense Interval_161778 chr8 122727000 122727692 + 0 NA intron (ENSMUSG00000110523.1, intron 2 of 2) protein_coding-intron (ENSMUSG00000092329.1, intron 1 of 15) 24979 ENSMUSG00000110523.1 ENSMUSG00000110523 ENSMUST00000212334 C230057M02Rik lincRNA Interval_52379 chr14 45479537 45480739 + 0 NA intron (ENSMUSG00000037712.16, intron 4 of 5) protein_coding-intron (ENSMUSG00000037712.16, intron 4 of 14) 3831 ENSMUSG00000037712.16 ENSMUSG00000037712 ENSMUST00000149723 Fermt2 protein_coding Interval_32438 chr11 107538096 107541260 + 0 NA intron (ENSMUSG00000059706.4, intron 1 of 1) processed_transcript-intron (ENSMUSG00000059706.4, intron 1 of 1) -7373 ENSMUSG00000083996.1 ENSMUSG00000083996 ENSMUST00000118214 Gm11649 transcribed_processed_pseudogene Interval_136895 chr6 63428429 63428686 + 0 NA intron (ENSMUSG00000071424.10, intron 1 of 8) protein_coding-intron (ENSMUSG00000071424.10, intron 1 of 15) -100116 ENSMUSG00000107525.1 ENSMUSG00000107525 ENSMUST00000204180 Gm44071 antisense Interval_100527 chr2 169929632 169930580 + 0 NA intron (ENSMUSG00000047907.11, intron 1 of 1) protein_coding-intron (ENSMUSG00000047907.11, intron 1 of 1) 33081 ENSMUSG00000103935.1 ENSMUSG00000103935 ENSMUST00000194482 AY702102 TEC Interval_174457 chrX 152705130 152705997 + 0 NA intron (ENSMUSG00000045180.13, intron 1 of 9) protein_coding-intron (ENSMUSG00000045180.13, intron 1 of 9) -32323 ENSMUSG00000045180.13 ENSMUSG00000045180 ENSMUST00000141677 Shroom2 protein_coding Interval_95698 chr2 114383522 114383895 + 0 NA Intergenic Intergenic -110273 ENSMUSG00000101266.1 ENSMUSG00000101266 ENSMUST00000187452 Gm29234 lincRNA Interval_57320 chr15 8728985 8729325 + 0 NA Intergenic Intergenic -18746 ENSMUSG00000005360.14 ENSMUSG00000005360 ENSMUST00000126747 Slc1a3 protein_coding Interval_64962 chr16 17547608 17548703 + 0 NA TTS (ENSMUSG00000022759.15) protein_coding-TTS (ENSMUSG00000022759.15) 13089 ENSMUSG00000022759.15 ENSMUSG00000022759 ENSMUST00000232637 Lrrc74b protein_coding Interval_125012 chr5 63861562 63862594 + 0 NA intron (ENSMUSG00000060512.7, intron 1 of 4) protein_coding-intron (ENSMUSG00000060512.7, intron 1 of 3) -15398 ENSMUSG00000060512.7 ENSMUSG00000060512 ENSMUST00000199667 0610040J01Rik protein_coding Interval_22501 chr11 11160434 11161695 + 0 NA intron (ENSMUSG00000050830.17, intron 3 of 4) protein_coding-intron (ENSMUSG00000050830.17, intron 2 of 3) 20550 ENSMUSG00000088861.1 ENSMUSG00000088861 ENSMUST00000158236 Gm23065 rRNA Interval_147224 chr7 64796792 64797935 + 0 NA intron (ENSMUSG00000030518.17, intron 3 of 6) protein_coding-intron (ENSMUSG00000030518.17, intron 4 of 9) 52780 ENSMUSG00000030519.14 ENSMUSG00000030519 ENSMUST00000206630 Apba2 protein_coding Interval_20238 chr10 116350524 116350791 + 0 NA intron (ENSMUSG00000020154.10, intron 19 of 33) protein_coding-intron (ENSMUSG00000020154.10, intron 17 of 31) 10074 ENSMUSG00000065086.1 ENSMUSG00000065086 ENSMUST00000083152 Gm26495 snoRNA Interval_784 chr1 11065206 11065898 + 0 NA intron (ENSMUSG00000048960.13, intron 2 of 39) protein_coding-intron (ENSMUSG00000048960.13, intron 2 of 39) 68686 ENSMUSG00000077318.1 ENSMUSG00000077318 ENSMUST00000104130 Gm24173 snoRNA Interval_3583 chr1 59744836 59745411 + 0 NA Intergenic Intergenic 40333 ENSMUSG00000089093.3 ENSMUSG00000089093 ENSMUST00000158468 Snord11 snoRNA Interval_140306 chr6 116298072 116298410 + 0 NA intron (ENSMUSG00000042213.17, intron 6 of 11) protein_coding-intron (ENSMUSG00000042213.17, intron 5 of 9) 33976 ENSMUSG00000042213.17 ENSMUSG00000042213 ENSMUST00000221824 Zfand4 protein_coding Interval_142605 chr6 144209419 144211000 + 0 NA promoter-TSS (ENSMUSG00000041540.16) protein_coding-promoter-TSS (ENSMUSG00000041540.16) -641 ENSMUSG00000041540.16 ENSMUSG00000041540 ENSMUST00000150087 Sox5 protein_coding Interval_161351 chr8 119904204 119904832 + 0 NA Intergenic Intergenic -6323 ENSMUSG00000092329.1 ENSMUSG00000092329 ENSMUST00000127664 Galnt2l protein_coding Interval_24142 chr11 30683567 30684004 + 0 NA Intergenic Intergenic 22116 ENSMUSG00000083655.1 ENSMUSG00000083655 ENSMUST00000118660 Gm12099 processed_pseudogene Interval_134965 chr6 34179862 34180177 + 0 NA intron (ENSMUSG00000087613.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000087613.1, intron 1 of 1) 787 ENSMUSG00000087613.1 ENSMUSG00000087613 ENSMUST00000145644 Gm13855 lincRNA Interval_72326 chr17 29218764 29219082 + 0 NA exon (ENSMUSG00000024008.16, exon 3 of 3) protein_coding-exon (ENSMUSG00000024008.16, exon 3 of 3) -4373 ENSMUSG00000117610.1 ENSMUSG00000117610 ENSMUST00000235091 Gm50054 TEC Interval_151693 chr7 126089860 126090406 + 0 NA Intergenic Intergenic -7722 ENSMUSG00000046182.8 ENSMUSG00000046182 ENSMUST00000073935 Gsg1l protein_coding Interval_68635 chr16 82326282 82326528 + 0 NA Intergenic Intergenic 154114 ENSMUSG00000116937.1 ENSMUSG00000116937 ENSMUST00000232378 Gm41480 lincRNA Interval_12721 chr10 4490276 4491638 + 0 NA intron (ENSMUSG00000019767.12, intron 1 of 10) protein_coding-intron (ENSMUSG00000019767.12, intron 1 of 10) 6723 ENSMUSG00000065371.1 ENSMUSG00000065371 ENSMUST00000083437 Gm22739 snRNA Interval_130630 chr5 129336883 129337143 + 0 NA Intergenic Intergenic -27107 ENSMUSG00000104681.1 ENSMUSG00000104681 ENSMUST00000199076 Gm43001 lincRNA Interval_143965 chr7 18653293 18653522 + 0 NA intron (ENSMUSG00000070796.11, intron 3 of 3) protein_coding-intron (ENSMUSG00000070796.11, intron 2 of 4) 3292 ENSMUSG00000070796.11 ENSMUSG00000070796 ENSMUST00000182933 Psg21 protein_coding Interval_145214 chr7 30698055 30699267 + 0 NA promoter-TSS (ENSMUSG00000013083.8) protein_coding-promoter-TSS (ENSMUSG00000013083.8) -265 ENSMUSG00000013083.8 ENSMUSG00000013083 ENSMUST00000013227 2200002J24Rik protein_coding Interval_97945 chr2 146015867 146016075 + 0 NA intron (ENSMUSG00000037143.17, intron 12 of 26) protein_coding-intron (ENSMUSG00000037143.17, intron 12 of 15) -81257 ENSMUSG00000001767.5 ENSMUSG00000001767 ENSMUST00000147904 Crnkl1 protein_coding Interval_29919 chr11 87748355 87749845 + 0 NA Intergenic Intergenic -6477 ENSMUSG00000084796.1 ENSMUSG00000084796 ENSMUST00000123700 Mir142hg lincRNA Interval_51615 chr14 30734547 30734994 + 0 NA intron (ENSMUSG00000006527.16, intron 1 of 20) protein_coding-intron (ENSMUSG00000006527.16, intron 1 of 20) 18279 ENSMUSG00000006527.16 ENSMUSG00000006527 ENSMUST00000227445 Sfmbt1 protein_coding Interval_110773 chr4 8215494 8217447 + 0 NA intron (ENSMUSG00000041261.9, intron 3 of 8) protein_coding-intron (ENSMUSG00000041261.9, intron 3 of 8) -19112 ENSMUSG00000096388.1 ENSMUSG00000096388 ENSMUST00000178456 Gm25355 miRNA Interval_52670 chr14 48458806 48459306 + 0 NA intron (ENSMUSG00000036339.18, intron 4 of 16) protein_coding-intron (ENSMUSG00000036339.18, intron 3 of 15) -13266 ENSMUSG00000036339.18 ENSMUSG00000036339 ENSMUST00000226344 Tmem260 protein_coding Interval_116866 chr4 117813270 117814539 + 0 NA Intergenic Intergenic 11752 ENSMUSG00000083507.1 ENSMUSG00000083507 ENSMUST00000117298 Gm12842 processed_pseudogene Interval_77566 chr17 91764776 91765468 + 0 NA Intergenic Intergenic 17315 ENSMUSG00000117555.1 ENSMUSG00000117555 ENSMUST00000234681 Gm49992 processed_pseudogene Interval_100043 chr2 166719666 166720525 + 0 NA Intergenic Intergenic -16501 ENSMUSG00000039621.13 ENSMUSG00000039621 ENSMUST00000140624 Prex1 protein_coding Interval_42011 chr13 6527895 6529272 + 0 NA Intergenic Intergenic -2012 ENSMUSG00000114195.1 ENSMUSG00000114195 ENSMUST00000221776 2900042G08Rik TEC Interval_155790 chr8 37885323 37885506 + 0 NA intron (ENSMUSG00000039539.13, intron 2 of 9) protein_coding-intron (ENSMUSG00000039539.13, intron 2 of 7) -96722 ENSMUSG00000081316.1 ENSMUSG00000081316 ENSMUST00000117720 Gm16205 processed_pseudogene Interval_140310 chr6 116345924 116346485 + 0 NA intron (ENSMUSG00000025702.15, intron 2 of 6) protein_coding-intron (ENSMUSG00000025702.15, intron 2 of 7) -4181 ENSMUSG00000025702.15 ENSMUSG00000025702 ENSMUST00000204918 Marchf8 protein_coding Interval_157621 chr8 71754901 71755622 + 0 NA intron (ENSMUSG00000110462.1, intron 2 of 3) lincRNA-intron (ENSMUSG00000110462.1, intron 2 of 3) -4857 ENSMUSG00000110473.1 ENSMUSG00000110473 ENSMUST00000212598 Gm29705 processed_pseudogene Interval_115165 chr4 92810889 92811569 + 0 NA Intergenic Intergenic 55353 ENSMUSG00000088914.1 ENSMUSG00000088914 ENSMUST00000158289 Gm22605 snRNA Interval_51595 chr14 30578875 30579096 + 0 NA Intergenic Intergenic 6836 ENSMUSG00000093156.1 ENSMUSG00000093156 ENSMUST00000175415 Mir3076 miRNA Interval_40592 chr12 105884059 105885341 + 0 NA Intergenic Intergenic -15141 ENSMUSG00000113835.1 ENSMUSG00000113835 ENSMUST00000220934 Gm19554 lincRNA Interval_909 chr1 13111958 13112299 + 0 NA Intergenic Intergenic 15035 ENSMUSG00000042414.7 ENSMUSG00000042414 ENSMUST00000047577 Prdm14 protein_coding Interval_164117 chr9 31621353 31622030 + 0 NA Intergenic Intergenic -22079 ENSMUSG00000111153.1 ENSMUSG00000111153 ENSMUST00000217424 Gm18820 processed_pseudogene Interval_158767 chr8 86203037 86203499 + 0 NA Intergenic Intergenic -30586 ENSMUSG00000088192.1 ENSMUSG00000088192 ENSMUST00000157567 Gm23904 snoRNA Interval_157184 chr8 67305476 67305973 + 0 NA Intergenic Intergenic -4963 ENSMUSG00000110632.1 ENSMUSG00000110632 ENSMUST00000213041 Gm45880 processed_pseudogene Interval_125191 chr5 65242339 65243336 + 0 NA intron (ENSMUSG00000037890.13, intron 24 of 25) protein_coding-intron (ENSMUSG00000037890.13, intron 24 of 36) 30830 ENSMUSG00000029191.16 ENSMUSG00000029191 ENSMUST00000203644 Rfc1 protein_coding Interval_67261 chr16 45038305 45038986 + 0 NA Intergenic Intergenic -54945 ENSMUSG00000022665.15 ENSMUSG00000022665 ENSMUST00000061050 Ccdc80 protein_coding Interval_74338 chr17 49056819 49057012 + 0 NA intron (ENSMUSG00000040490.4, intron 1 of 2) protein_coding-intron (ENSMUSG00000040490.4, intron 1 of 2) 39518 ENSMUSG00000105424.1 ENSMUSG00000105424 ENSMUST00000200509 Gm44304 miRNA Interval_28021 chr11 72285735 72288137 + 0 NA Intergenic Intergenic 5920 ENSMUSG00000084599.1 ENSMUSG00000084599 ENSMUST00000122650 n-R5s70 rRNA Interval_124144 chr5 38652807 38653820 + 0 NA Intergenic Intergenic 31513 ENSMUSG00000046572.10 ENSMUSG00000046572 ENSMUST00000178760 Zfp518b protein_coding Interval_129758 chr5 122154542 122155236 + 0 NA Intergenic Intergenic -3704 ENSMUSG00000004455.16 ENSMUSG00000004455 ENSMUST00000134719 Ppp1cc protein_coding Interval_88655 chr2 8849790 8850093 + 0 NA Intergenic Intergenic 192543 ENSMUSG00000082953.3 ENSMUSG00000082953 ENSMUST00000120466 Gm13217 unprocessed_pseudogene Interval_40941 chr12 110064802 110065507 + 0 NA intron (ENSMUSG00000113868.1, intron 2 of 2) lincRNA-intron (ENSMUSG00000113868.1, intron 2 of 2) 2884 ENSMUSG00000113217.1 ENSMUSG00000113217 ENSMUST00000220598 Gm47187 processed_pseudogene Interval_72621 chr17 31108362 31108617 + 0 NA intron (ENSMUSG00000024030.7, intron 9 of 14) protein_coding-intron (ENSMUSG00000024030.7, intron 9 of 14) 21157 ENSMUSG00000024029.4 ENSMUSG00000024029 ENSMUST00000024827 Tff3 protein_coding Interval_122097 chr5 16947233 16948267 + 0 NA Intergenic Intergenic -33286 ENSMUSG00000105706.1 ENSMUSG00000105706 ENSMUST00000197388 Gm42855 processed_pseudogene Interval_149889 chr7 102266885 102268548 + 0 NA promoter-TSS (ENSMUSG00000030987.5) protein_coding-promoter-TSS (ENSMUSG00000030987.5) -611 ENSMUSG00000030987.5 ENSMUSG00000030987 ENSMUST00000210544 Stim1 protein_coding Interval_71339 chr17 22406390 22406720 + 0 NA Intergenic Intergenic -44568 ENSMUSG00000071266.13 ENSMUSG00000071266 ENSMUST00000167740 Zfp946 protein_coding Interval_141937 chr6 135577434 135577627 + 0 NA Intergenic Intergenic -6662 ENSMUSG00000065187.1 ENSMUSG00000065187 ENSMUST00000083253 Gm25136 snoRNA Interval_9542 chr1 159149453 159150756 + 0 NA intron (ENSMUSG00000104014.1, intron 3 of 4) lincRNA-intron (ENSMUSG00000104014.1, intron 3 of 4) 15832 ENSMUSG00000104014.1 ENSMUSG00000104014 ENSMUST00000195279 4930562F17Rik lincRNA Interval_95185 chr2 104602515 104605344 + 0 NA intron (ENSMUSG00000027176.8, intron 1 of 1) protein_coding-intron (ENSMUSG00000027176.8, intron 1 of 20) 13311 ENSMUSG00000027176.8 ENSMUSG00000027176 ENSMUST00000126539 Cstf3 protein_coding Interval_95964 chr2 118728256 118729182 + 0 NA promoter-TSS (ENSMUSG00000040061.17) protein_coding-promoter-TSS (ENSMUSG00000040061.17) -360 ENSMUSG00000040061.17 ENSMUSG00000040061 ENSMUST00000006415 Plcb2 protein_coding Interval_74366 chr17 49522522 49522761 + 0 NA intron (ENSMUSG00000040260.8, intron 1 of 2) protein_coding-intron (ENSMUSG00000040260.8, intron 1 of 25) 41665 ENSMUSG00000040260.8 ENSMUSG00000040260 ENSMUST00000226030 Daam2 protein_coding Interval_31757 chr11 102665076 102666439 + 0 NA exon (ENSMUSG00000051455.13, exon 1 of 8) protein_coding-exon (ENSMUSG00000051455.13, exon 1 of 8) 2041 ENSMUSG00000051455.13 ENSMUSG00000051455 ENSMUST00000155813 Meioc protein_coding Interval_108177 chr3 122183891 122184755 + 0 NA exon (ENSMUSG00000104799.1, exon 1 of 1) processed_pseudogene-exon (ENSMUSG00000104799.1, exon 1 of 1) 681 ENSMUSG00000104799.1 ENSMUSG00000104799 ENSMUST00000198695 Gm9361 processed_pseudogene Interval_29228 chr11 81771188 81772116 + 0 NA intron (ENSMUSG00000020704.13, intron 1 of 9) protein_coding-intron (ENSMUSG00000020704.13, intron 1 of 9) -89021 ENSMUSG00000020703.3 ENSMUSG00000020703 ENSMUST00000021044 5530401A14Rik protein_coding Interval_94044 chr2 82203484 82203820 + 0 NA intron (ENSMUSG00000070866.4, intron 1 of 3) protein_coding-intron (ENSMUSG00000070866.4, intron 1 of 3) -31521 ENSMUSG00000070866.4 ENSMUSG00000070866 ENSMUST00000127187 Zfp804a protein_coding Interval_103591 chr3 50913019 50913426 + 0 NA Intergenic Intergenic 8303 ENSMUSG00000102614.1 ENSMUSG00000102614 ENSMUST00000195213 Gm37843 TEC Interval_130583 chr5 129030180 129030786 + 0 NA Intergenic Intergenic 10281 ENSMUSG00000029430.13 ENSMUSG00000029430 ENSMUST00000111343 Ran protein_coding Interval_118493 chr4 132033328 132033726 + 0 NA intron (ENSMUSG00000028906.17, intron 1 of 20) protein_coding-intron (ENSMUSG00000028906.17, intron 1 of 20) -14651 ENSMUSG00000084869.1 ENSMUSG00000084869 ENSMUST00000132247 Gm13063 lincRNA Interval_136025 chr6 49919277 49920030 + 0 NA Intergenic Intergenic -60807 ENSMUSG00000107664.1 ENSMUSG00000107664 ENSMUST00000205019 Gm18007 processed_pseudogene Interval_16641 chr10 66758705 66759189 + 0 NA promoter-TSS (ENSMUSG00000112383.1) lincRNA-promoter-TSS (ENSMUSG00000112383.1) -507 ENSMUSG00000112383.1 ENSMUSG00000112383 ENSMUST00000220363 Gm47895 lincRNA Interval_82416 chr18 73839761 73840433 + 0 NA Intergenic Intergenic -19290 ENSMUSG00000064036.15 ENSMUSG00000064036 ENSMUST00000134847 Mro protein_coding Interval_76009 chr17 74329380 74329877 + 0 NA TTS (ENSMUSG00000117202.1) processed_pseudogene-TTS (ENSMUSG00000117202.1) 260 ENSMUSG00000117202.1 ENSMUSG00000117202 ENSMUST00000232994 Gm9349 processed_pseudogene Interval_130473 chr5 128000120 128000804 + 0 NA intron (ENSMUSG00000034310.8, intron 3 of 8) protein_coding-intron (ENSMUSG00000034310.8, intron 3 of 8) 121931 ENSMUSG00000085328.2 ENSMUSG00000085328 ENSMUST00000164420 Gm17131 unprocessed_pseudogene Interval_144615 chr7 27136590 27137370 + 0 NA Intergenic Intergenic -6306 ENSMUSG00000086868.1 ENSMUSG00000086868 ENSMUST00000153562 Gm15883 antisense Interval_145595 chr7 35777176 35777378 + 0 NA intron (ENSMUSG00000044452.10, intron 3 of 3) protein_coding-intron (ENSMUSG00000044452.10, intron 5 of 6) 1891 ENSMUSG00000044452.10 ENSMUSG00000044452 ENSMUST00000206003 Zfp507 protein_coding Interval_26459 chr11 57983540 57985026 + 0 NA Intergenic Intergenic -11149 ENSMUSG00000086666.1 ENSMUSG00000086666 ENSMUST00000132323 Gm12249 lincRNA Interval_129772 chr5 122240920 122241777 + 0 NA TTS (ENSMUSG00000038593.18) protein_coding-TTS (ENSMUSG00000038593.18) -11654 ENSMUSG00000082645.3 ENSMUSG00000082645 ENSMUST00000120264 Gm15481 processed_pseudogene Interval_14412 chr10 33198159 33198669 + 0 NA promoter-TSS (ENSMUSG00000019787.9) protein_coding-promoter-TSS (ENSMUSG00000019787.9) -12671 ENSMUSG00000112182.1 ENSMUSG00000112182 ENSMUST00000220148 Gm47845 processed_pseudogene Interval_21268 chr10 127563118 127564717 + 0 NA intron (ENSMUSG00000040249.15, intron 41 of 88) protein_coding-intron (ENSMUSG00000040249.15, intron 41 of 88) -20709 ENSMUSG00000040249.15 ENSMUSG00000040249 ENSMUST00000118455 Lrp1 protein_coding Interval_94256 chr2 86761121 86761737 + 0 NA Intergenic Intergenic -2436 ENSMUSG00000075172.3 ENSMUSG00000075172 ENSMUST00000099875 Olfr1090 protein_coding Interval_149869 chr7 102106358 102107642 + 0 NA exon (ENSMUSG00000030996.8, exon 3 of 5) protein_coding-exon (ENSMUSG00000030996.8, exon 3 of 5) 2489 ENSMUSG00000070424.12 ENSMUSG00000070424 ENSMUST00000211553 Art5 protein_coding Interval_66077 chr16 31458304 31458824 + 0 NA exon (ENSMUSG00000046598.15, exon 7 of 7) protein_coding-exon (ENSMUSG00000046598.15, exon 7 of 7) -11362 ENSMUSG00000116572.1 ENSMUSG00000116572 ENSMUST00000232608 Gm49695 lincRNA Interval_171899 chr9 122225133 122225796 + 0 NA intron (ENSMUSG00000037949.8, intron 11 of 12) protein_coding-intron (ENSMUSG00000037949.8, intron 11 of 12) 48564 ENSMUSG00000098922.1 ENSMUSG00000098922 ENSMUST00000184520 Mir8106 miRNA Interval_53253 chr14 55603585 55604993 + 0 NA promoter-TSS (ENSMUSG00000002325.15) protein_coding-promoter-TSS (ENSMUSG00000002325.15) 3133 ENSMUSG00000047098.18 ENSMUSG00000047098 ENSMUST00000227708 Rnf31 protein_coding Interval_94129 chr2 84556849 84557485 + 0 NA Intergenic Intergenic -7578 ENSMUSG00000118570.1 ENSMUSG00000118570 ENSMUST00000238875 AL928616.2 unprocessed_pseudogene Interval_41979 chr13 5843794 5845647 + 0 NA Intergenic Intergenic 12841 ENSMUSG00000100625.7 ENSMUSG00000100625 ENSMUST00000223142 1700016G22Rik lincRNA Interval_118830 chr4 133934449 133934675 + 0 NA Intergenic Intergenic 33329 ENSMUSG00000003038.15 ENSMUSG00000003038 ENSMUST00000136859 Hmgn2 protein_coding Interval_165537 chr9 49110119 49111153 + 0 NA intron (ENSMUSG00000032268.13, intron 2 of 8) protein_coding-intron (ENSMUSG00000032268.13, intron 6 of 12) 7908 ENSMUSG00000032268.13 ENSMUSG00000032268 ENSMUST00000170426 Tmprss5 protein_coding Interval_47112 chr13 75876231 75876736 + 0 NA TTS (ENSMUSG00000021589.13) protein_coding-TTS (ENSMUSG00000021589.13) 912 ENSMUSG00000021589.13 ENSMUSG00000021589 ENSMUST00000109606 Rhobtb3 protein_coding Interval_132944 chr5 148892878 148893318 + 0 NA TTS (ENSMUSG00000041298.15) protein_coding-TTS (ENSMUSG00000041298.15) -33590 ENSMUSG00000106810.1 ENSMUSG00000106810 ENSMUST00000202134 Gm43600 unprocessed_pseudogene Interval_149112 chr7 93725843 93726041 + 0 NA Intergenic Intergenic -65387 ENSMUSG00000109440.1 ENSMUSG00000109440 ENSMUST00000208471 Bc1-ps1 scRNA Interval_172156 chrX 8063850 8064374 + 0 NA intron (ENSMUSG00000039231.18, intron 3 of 4) protein_coding-intron (ENSMUSG00000039231.18, intron 3 of 5) 10509 ENSMUSG00000039231.18 ENSMUSG00000039231 ENSMUST00000127617 Suv39h1 protein_coding Interval_173705 chrX 102199616 102200241 + 0 NA Intergenic Intergenic -8474 ENSMUSG00000081263.1 ENSMUSG00000081263 ENSMUST00000117752 Gm14859 processed_pseudogene Interval_142815 chr6 145998425 145999299 + 0 NA TTS (ENSMUSG00000108161.1) lincRNA-TTS (ENSMUSG00000108161.1) 2901 ENSMUSG00000108161.1 ENSMUSG00000108161 ENSMUST00000203815 Gm32914 lincRNA Interval_149295 chr7 97066735 97066960 + 0 NA Intergenic Intergenic -14929 ENSMUSG00000004508.6 ENSMUSG00000004508 ENSMUST00000206791 Gab2 protein_coding Interval_156312 chr8 47320584 47321183 + 0 NA intron (ENSMUSG00000038143.16, intron 7 of 7) protein_coding-intron (ENSMUSG00000038143.16, intron 1 of 4) 92954 ENSMUSG00000038143.16 ENSMUSG00000038143 ENSMUST00000181417 Stox2 protein_coding Interval_76335 chr17 79180229 79180800 + 0 NA Intergenic Intergenic -76770 ENSMUSG00000117054.1 ENSMUSG00000117054 ENSMUST00000232888 Gm49869 processed_pseudogene Interval_40646 chr12 106310201 106311578 + 0 NA Intergenic Intergenic -16479 ENSMUSG00000091280.1 ENSMUSG00000091280 ENSMUST00000164367 Gm17032 lincRNA Interval_111816 chr4 31167518 31168097 + 0 NA Intergenic Intergenic 7205 ENSMUSG00000065053.1 ENSMUSG00000065053 ENSMUST00000083119 Gm25705 snRNA Interval_117174 chr4 120242484 120243267 + 0 NA Intergenic Intergenic 44474 ENSMUSG00000052135.8 ENSMUSG00000052135 ENSMUST00000102656 Foxo6 protein_coding Interval_124296 chr5 43717689 43718671 + 0 NA intron (ENSMUSG00000039765.15, intron 25 of 39) protein_coding-intron (ENSMUSG00000039765.15, intron 25 of 39) 36091 ENSMUSG00000104728.1 ENSMUSG00000104728 ENSMUST00000196543 Gm42462 TEC Interval_75191 chr17 64528637 64530128 + 0 NA intron (ENSMUSG00000073377.9, intron 1 of 2) lincRNA-intron (ENSMUSG00000073377.9, intron 1 of 3) 26278 ENSMUSG00000073377.9 ENSMUSG00000073377 ENSMUST00000168379 AU016765 lincRNA Interval_51078 chr14 22074274 22074516 + 0 NA intron (ENSMUSG00000063458.13, intron 2 of 3) protein_coding-intron (ENSMUSG00000063458.13, intron 2 of 6) -38292 ENSMUSG00000114205.1 ENSMUSG00000114205 ENSMUST00000225573 Gm7480 antisense Interval_113990 chr4 62303373 62304088 + 0 NA intron (ENSMUSG00000066151.12, intron 20 of 20) protein_coding-intron (ENSMUSG00000066151.12, intron 26 of 27) 34765 ENSMUSG00000066151.12 ENSMUSG00000066151 ENSMUST00000131977 Fkbp15 protein_coding Interval_169882 chr9 102717155 102718911 + 0 NA promoter-TSS (ENSMUSG00000032531.15) protein_coding-promoter-TSS (ENSMUSG00000032531.15) -535 ENSMUSG00000032531.15 ENSMUSG00000032531 ENSMUST00000136934 Amotl2 protein_coding Interval_16151 chr10 61064475 61065564 + 0 NA Intergenic Intergenic -13119 ENSMUSG00000093573.1 ENSMUSG00000093573 ENSMUST00000176406 Gm20610 lincRNA Interval_153764 chr8 7888940 7889108 + 0 NA Intergenic Intergenic 31148 ENSMUSG00000099890.2 ENSMUSG00000099890 ENSMUST00000192596 Gm28262 processed_transcript Interval_146577 chr7 46975308 46975688 + 0 NA promoter-TSS (ENSMUSG00000110001.1) lincRNA-promoter-TSS (ENSMUSG00000110001.1) 14 ENSMUSG00000110001.1 ENSMUSG00000110001 ENSMUST00000210794 C86187 lincRNA Interval_25455 chr11 48696512 48697896 + 0 NA Intergenic Intergenic 12495 ENSMUSG00000088425.1 ENSMUSG00000088425 ENSMUST00000157800 Gm24422 snoRNA Interval_150275 chr7 109206977 109207232 + 0 NA Intergenic Intergenic 17096 ENSMUSG00000109001.1 ENSMUSG00000109001 ENSMUST00000208274 Gm45024 lincRNA Interval_33416 chr11 116439406 116440514 + 0 NA TTS (ENSMUSG00000050628.6) protein_coding-TTS (ENSMUSG00000050628.6) 5451 ENSMUSG00000050628.6 ENSMUSG00000050628 ENSMUST00000144310 Ubald2 protein_coding Interval_16045 chr10 60277164 60278244 + 0 NA promoter-TSS (ENSMUSG00000004207.14) protein_coding-promoter-TSS (ENSMUSG00000004207.14) 76 ENSMUSG00000004207.14 ENSMUSG00000004207 ENSMUST00000165878 Psap protein_coding Interval_144561 chr7 25902970 25904674 + 0 NA intron (ENSMUSG00000030483.14, intron 1 of 8) protein_coding-intron (ENSMUSG00000030483.14, intron 1 of 9) -12944 ENSMUSG00000030483.14 ENSMUSG00000030483 ENSMUST00000144140 Cyp2b10 protein_coding Interval_42438 chr13 13532056 13532307 + 0 NA Intergenic Intergenic 17443 ENSMUSG00000114068.1 ENSMUSG00000114068 ENSMUST00000221249 Gm48783 TEC Interval_47248 chr13 79558855 79559078 + 0 NA Intergenic Intergenic 103996 ENSMUSG00000096005.1 ENSMUSG00000096005 ENSMUST00000179499 Gm24863 snRNA Interval_128086 chr5 110790236 110790433 + 0 NA promoter-TSS (ENSMUSG00000029512.11) protein_coding-promoter-TSS (ENSMUSG00000029512.11) -9719 ENSMUSG00000029507.16 ENSMUSG00000029507 ENSMUST00000149208 Pus1 protein_coding Interval_150538 chr7 112157845 112160063 + 0 NA intron (ENSMUSG00000030772.6, intron 1 of 7) protein_coding-intron (ENSMUSG00000030772.6, intron 1 of 7) 103 ENSMUSG00000030772.6 ENSMUSG00000030772 ENSMUST00000033036 Dkk3 protein_coding Interval_64317 chr16 10446679 10447959 + 0 NA promoter-TSS (ENSMUSG00000050908.12) protein_coding-promoter-TSS (ENSMUSG00000050908.12) 8 ENSMUSG00000050908.12 ENSMUSG00000050908 ENSMUST00000141587 Tvp23a protein_coding Interval_121480 chr4 156067272 156067999 + 0 NA Intergenic Intergenic -7833 ENSMUSG00000086549.1 ENSMUSG00000086549 ENSMUST00000138361 Gm13648 processed_transcript Interval_13462 chr10 18430933 18431810 + 0 NA intron (ENSMUSG00000039835.16, intron 1 of 3) protein_coding-intron (ENSMUSG00000039835.16, intron 1 of 6) -94130 ENSMUSG00000111313.1 ENSMUSG00000111313 ENSMUST00000213578 Gm18942 processed_pseudogene Interval_60489 chr15 74326333 74327215 + 0 NA Intergenic Intergenic 113670 ENSMUSG00000118581.1 ENSMUSG00000118581 ENSMUST00000239328 AC119183.1 unitary_pseudogene Interval_120886 chr4 151310301 151311046 + 0 NA intron (ENSMUSG00000014592.21, intron 5 of 24) protein_coding-intron (ENSMUSG00000014592.21, intron 5 of 23) -65797 ENSMUSG00000085593.1 ENSMUSG00000085593 ENSMUST00000129097 4930589P08Rik antisense Interval_7289 chr1 128458962 128460033 + 0 NA Intergenic Intergenic -30543 ENSMUSG00000088196.1 ENSMUSG00000088196 ENSMUST00000157571 Gm23902 snoRNA Interval_27474 chr11 68095204 68095962 + 0 NA TTS (ENSMUSG00000083924.1) processed_pseudogene-TTS (ENSMUSG00000083924.1) 381 ENSMUSG00000083924.1 ENSMUSG00000083924 ENSMUST00000120312 Gm12304 processed_pseudogene Interval_35316 chr12 20470587 20471018 + 0 NA Intergenic Intergenic 19127 ENSMUSG00000116537.1 ENSMUSG00000116537 ENSMUST00000232443 Gm49698 lincRNA Interval_71210 chr17 21178579 21179173 + 0 NA Intergenic Intergenic 3097 ENSMUSG00000100191.1 ENSMUSG00000100191 ENSMUST00000186171 Gm7740 processed_pseudogene Interval_2187 chr1 36918872 36920875 + 0 NA intron (ENSMUSG00000026116.11, intron 1 of 5) protein_coding-intron (ENSMUSG00000026116.11, intron 1 of 40) -3334 ENSMUSG00000102930.1 ENSMUSG00000102930 ENSMUST00000194317 Gm38115 sense_intronic Interval_38004 chr12 73790753 73791780 + 0 NA Intergenic Intergenic -2217 ENSMUSG00000113321.1 ENSMUSG00000113321 ENSMUST00000222997 Gm8075 lincRNA Interval_124613 chr5 52367950 52369327 + 0 NA exon (ENSMUSG00000072941.5, exon 2 of 2) protein_coding-exon (ENSMUSG00000072941.5, exon 2 of 2) 4847 ENSMUSG00000072941.5 ENSMUSG00000072941 ENSMUST00000101208 Sod3 protein_coding Interval_21638 chr11 3380264 3381085 + 0 NA intron (ENSMUSG00000020451.17, intron 1 of 4) protein_coding-intron (ENSMUSG00000020451.17, intron 2 of 15) -25763 ENSMUSG00000087055.1 ENSMUSG00000087055 ENSMUST00000142322 Gm11948 sense_intronic Interval_33556 chr11 117188192 117188526 + 0 NA Intergenic Intergenic 33290 ENSMUSG00000020823.16 ENSMUSG00000020823 ENSMUST00000153437 Sec14l1 protein_coding Interval_112304 chr4 40226939 40228396 + 0 NA exon (ENSMUSG00000040296.15, exon 4 of 4) protein_coding-exon (ENSMUSG00000040296.15, exon 4 of 4) 12158 ENSMUSG00000040296.15 ENSMUSG00000040296 ENSMUST00000149539 Ddx58 protein_coding Interval_77914 chr18 5427470 5427971 + 0 NA Intergenic Intergenic -57238 ENSMUSG00000117617.1 ENSMUSG00000117617 ENSMUST00000234572 Gm50065 lincRNA Interval_19596 chr10 105139608 105139847 + 0 NA TTS (ENSMUSG00000077407.1) snoRNA-TTS (ENSMUSG00000077407.1) 608 ENSMUSG00000077407.1 ENSMUSG00000077407 ENSMUST00000104219 Gm25422 snoRNA Interval_162481 chr9 3054906 3055345 + 0 NA Intergenic Intergenic -16382 ENSMUSG00000106183.1 ENSMUSG00000106183 ENSMUST00000195989 Mir101c miRNA Interval_74475 chr17 51534438 51534978 + 0 NA intron (ENSMUSG00000117181.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000117181.1, intron 1 of 1) 150 ENSMUSG00000117181.1 ENSMUSG00000117181 ENSMUST00000233527 Gm31143 lincRNA Interval_125489 chr5 67607072 67609039 + 0 NA promoter-TSS (ENSMUSG00000050010.8) protein_coding-promoter-TSS (ENSMUSG00000050010.8) 86 ENSMUSG00000050010.8 ENSMUSG00000050010 ENSMUST00000142843 Shisa3 protein_coding Interval_102829 chr3 31716490 31716695 + 0 NA Intergenic Intergenic -26007 ENSMUSG00000103499.5 ENSMUSG00000103499 ENSMUST00000192046 Gm6558 transcribed_unprocessed_pseudogene Interval_81572 chr18 61764771 61765220 + 0 NA intron (ENSMUSG00000033032.15, intron 1 of 15) protein_coding-intron (ENSMUSG00000033032.15, intron 1 of 18) 21616 ENSMUSG00000033032.15 ENSMUSG00000033032 ENSMUST00000147278 Afap1l1 protein_coding Interval_132352 chr5 144399329 144399632 + 0 NA intron (ENSMUSG00000047843.16, intron 3 of 3) protein_coding-intron (ENSMUSG00000047843.16, intron 3 of 3) -7122 ENSMUSG00000083574.1 ENSMUSG00000083574 ENSMUST00000118354 Gm15709 processed_pseudogene Interval_149169 chr7 95779124 95779293 + 0 NA Intergenic Intergenic 134178 ENSMUSG00000108628.1 ENSMUSG00000108628 ENSMUST00000205327 Gm5037 processed_pseudogene Interval_168759 chr9 86739091 86741333 + 0 NA Intergenic Intergenic -3437 ENSMUSG00000033491.13 ENSMUSG00000033491 ENSMUST00000036426 Prss35 protein_coding Interval_41557 chr12 116262563 116263348 + 0 NA promoter-TSS (ENSMUSG00000042050.8) protein_coding-promoter-TSS (ENSMUSG00000042050.8) 31 ENSMUSG00000042050.8 ENSMUSG00000042050 ENSMUST00000221029 Wdr60 protein_coding Interval_63244 chr15 99904375 99905067 + 0 NA TTS (ENSMUSG00000116141.1) TEC-TTS (ENSMUSG00000116141.1) 1758 ENSMUSG00000116141.1 ENSMUSG00000116141 ENSMUST00000230686 Gm49495 TEC Interval_166663 chr9 61690296 61691321 + 0 NA Intergenic Intergenic -72276 ENSMUSG00000111739.1 ENSMUSG00000111739 ENSMUST00000213572 Gm47241 processed_pseudogene Interval_12770 chr10 5194281 5195405 + 0 NA promoter-TSS (ENSMUSG00000096054.3) protein_coding-promoter-TSS (ENSMUSG00000096054.3) -9317 ENSMUSG00000096054.3 ENSMUSG00000096054 ENSMUST00000214945 Syne1 protein_coding Interval_57898 chr15 25144344 25144520 + 0 NA intron (ENSMUSG00000051237.7, intron 2 of 3) lincRNA-intron (ENSMUSG00000051237.7, intron 1 of 2) -16028 ENSMUSG00000115174.1 ENSMUSG00000115174 ENSMUST00000226274 Gm35996 lincRNA Interval_118045 chr4 128588995 128589529 + 0 NA intron (ENSMUSG00000061894.15, intron 6 of 7) protein_coding-intron (ENSMUSG00000061894.15, intron 2 of 3) 20772 ENSMUSG00000061894.15 ENSMUSG00000061894 ENSMUST00000141040 Zscan20 protein_coding Interval_48214 chr13 97224248 97225362 + 0 NA Intergenic Intergenic -16300 ENSMUSG00000041773.8 ENSMUSG00000041773 ENSMUST00000041623 Enc1 protein_coding Interval_69471 chr16 93767097 93767393 + 0 NA intron (ENSMUSG00000022946.10, intron 17 of 35) protein_coding-intron (ENSMUSG00000022946.10, intron 18 of 36) -25544 ENSMUSG00000022946.10 ENSMUSG00000022946 ENSMUST00000228423 Dop1b protein_coding Interval_164907 chr9 43019686 43020063 + 0 NA intron (ENSMUSG00000059495.14, intron 5 of 6) protein_coding-intron (ENSMUSG00000059495.14, intron 8 of 41) 6786 ENSMUSG00000059495.14 ENSMUSG00000059495 ENSMUST00000214175 Arhgef12 protein_coding Interval_73682 chr17 42781824 42782883 + 0 NA Intergenic Intergenic -40174 ENSMUSG00000057899.7 ENSMUSG00000057899 ENSMUST00000113614 Adgrf2 protein_coding Interval_145585 chr7 35729487 35729893 + 0 NA promoter-TSS (ENSMUSG00000043671.14) protein_coding-promoter-TSS (ENSMUSG00000043671.14) -21125 ENSMUSG00000043671.14 ENSMUSG00000043671 ENSMUST00000124116 Dpy19l3 protein_coding Interval_139967 chr6 113103693 113105178 + 0 NA promoter-TSS (ENSMUSG00000034269.12) protein_coding-promoter-TSS (ENSMUSG00000034269.12) -5982 ENSMUSG00000034269.12 ENSMUSG00000034269 ENSMUST00000156048 Setd5 protein_coding Interval_20996 chr10 123110846 123111078 + 0 NA TTS (ENSMUSG00000020124.10) protein_coding-TTS (ENSMUSG00000020124.10) 67722 ENSMUSG00000112879.1 ENSMUSG00000112879 ENSMUST00000219693 Gm47726 processed_pseudogene Interval_60963 chr15 78264857 78265087 + 0 NA Intergenic Intergenic 4094 ENSMUSG00000071715.12 ENSMUSG00000071715 ENSMUST00000148646 Ncf4 protein_coding Interval_141596 chr6 130421903 130422118 + 0 NA Intergenic Intergenic -14075 ENSMUSG00000084204.2 ENSMUSG00000084204 ENSMUST00000119671 Gm6584 unprocessed_pseudogene Interval_48649 chr13 100832804 100833812 + 0 NA promoter-TSS (ENSMUSG00000021629.10) protein_coding-promoter-TSS (ENSMUSG00000021629.10) 32 ENSMUSG00000021629.10 ENSMUSG00000021629 ENSMUST00000224177 Slc30a5 protein_coding Interval_125984 chr5 76542782 76543816 + 0 NA intron (ENSMUSG00000036435.13, intron 1 of 4) protein_coding-intron (ENSMUSG00000036435.13, intron 5 of 17) -9347 ENSMUSG00000036435.13 ENSMUSG00000036435 ENSMUST00000143736 Exoc1 protein_coding Interval_69576 chr16 94370232 94371861 + 0 NA promoter-TSS (ENSMUSG00000022940.17) protein_coding-promoter-TSS (ENSMUSG00000022940.17) 796 ENSMUSG00000022940.17 ENSMUSG00000022940 ENSMUST00000138514 Pigp protein_coding Interval_150643 chr7 113045579 113046299 + 0 NA Intergenic Intergenic 62036 ENSMUSG00000110207.1 ENSMUSG00000110207 ENSMUST00000210768 Gm33586 lincRNA Interval_148281 chr7 80269175 80270254 + 0 NA promoter-TSS (ENSMUSG00000030534.13) protein_coding-promoter-TSS (ENSMUSG00000030534.13) 8494 ENSMUSG00000047084.8 ENSMUSG00000047084 ENSMUST00000138005 Ngrn protein_coding Interval_148884 chr7 89837975 89838329 + 0 NA intron (ENSMUSG00000030621.17, intron 7 of 10) protein_coding-intron (ENSMUSG00000030621.17, intron 2 of 8) 10934 ENSMUSG00000109150.1 ENSMUSG00000109150 ENSMUST00000207900 Gm45793 TEC Interval_10041 chr1 165295167 165295728 + 0 NA promoter-TSS (ENSMUSG00000040836.15) protein_coding-promoter-TSS (ENSMUSG00000040836.15) -342 ENSMUSG00000040836.15 ENSMUSG00000040836 ENSMUST00000111450 Gpr161 protein_coding Interval_25195 chr11 45108522 45108806 + 0 NA intron (ENSMUSG00000084773.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000084773.1, intron 1 of 2) 8264 ENSMUSG00000084773.1 ENSMUSG00000084773 ENSMUST00000143869 Gm12159 lincRNA Interval_168640 chr9 84851938 84852494 + 0 NA exon (ENSMUSG00000099724.2, exon 1 of 2) lincRNA-exon (ENSMUSG00000099724.2, exon 1 of 2) -6491 ENSMUSG00000111500.1 ENSMUSG00000111500 ENSMUST00000213542 Gm48820 lincRNA Interval_169021 chr9 90241544 90241847 + 0 NA intron (ENSMUSG00000037410.13, intron 2 of 2) protein_coding-intron (ENSMUSG00000037410.13, intron 2 of 12) 14232 ENSMUSG00000037410.13 ENSMUSG00000037410 ENSMUST00000144646 Tbc1d2b protein_coding Interval_101974 chr3 14000408 14000651 + 0 NA intron (ENSMUSG00000039717.16, intron 1 of 6) protein_coding-intron (ENSMUSG00000039717.16, intron 1 of 7) 29233 ENSMUSG00000084684.1 ENSMUSG00000084684 ENSMUST00000122735 Gm22026 misc_RNA Interval_157866 chr8 75070430 75072231 + 0 NA Intergenic Intergenic -7811 ENSMUSG00000110429.1 ENSMUSG00000110429 ENSMUST00000212025 Gm2059 processed_pseudogene Interval_115697 chr4 102493122 102494945 + 0 NA intron (ENSMUSG00000028525.16, intron 4 of 6) protein_coding-intron (ENSMUSG00000028525.16, intron 2 of 14) 238803 ENSMUSG00000028525.16 ENSMUSG00000028525 ENSMUST00000106901 Pde4b protein_coding Interval_91428 chr2 38738796 38740176 + 0 NA TTS (ENSMUSG00000063972.13) protein_coding-TTS (ENSMUSG00000063972.13) 19200 ENSMUSG00000108124.1 ENSMUSG00000108124 ENSMUST00000203508 Gm44146 TEC Interval_127182 chr5 100884615 100885424 + 0 NA exon (ENSMUSG00000029314.14, exon 6 of 13) protein_coding-exon (ENSMUSG00000029314.14, exon 6 of 13) 886 ENSMUSG00000106178.1 ENSMUSG00000106178 ENSMUST00000197115 Gm42987 TEC Interval_2566 chr1 40457875 40458757 + 0 NA intron (ENSMUSG00000026069.15, intron 10 of 10) protein_coding-intron (ENSMUSG00000026069.15, intron 9 of 9) -7690 ENSMUSG00000026070.15 ENSMUSG00000026070 ENSMUST00000108044 Il18r1 protein_coding Interval_9533 chr1 158793670 158793998 + 0 NA intron (ENSMUSG00000073530.11, intron 13 of 21) protein_coding-intron (ENSMUSG00000073530.11, intron 13 of 21) 166547 ENSMUSG00000073530.11 ENSMUSG00000073530 ENSMUST00000159892 Pappa2 protein_coding Interval_33242 chr11 115441114 115441965 + 0 NA exon (ENSMUSG00000070332.4, exon 3 of 8) protein_coding-exon (ENSMUSG00000070332.4, exon 3 of 8) 994 ENSMUSG00000070332.4 ENSMUSG00000070332 ENSMUST00000093914 Trim80 protein_coding Interval_155641 chr8 35494576 35496363 + 0 NA promoter-TSS (ENSMUSG00000031527.7) protein_coding-promoter-TSS (ENSMUSG00000031527.7) -14061 ENSMUSG00000031527.7 ENSMUSG00000031527 ENSMUST00000210483 Eri1 protein_coding Interval_2297 chr1 37883358 37884760 + 0 NA intron (ENSMUSG00000026088.15, intron 2 of 7) protein_coding-intron (ENSMUSG00000026088.15, intron 2 of 6) 6348 ENSMUSG00000026088.15 ENSMUSG00000026088 ENSMUST00000138806 Mitd1 protein_coding Interval_51779 chr14 32159173 32160356 + 0 NA promoter-TSS (ENSMUSG00000056234.15) protein_coding-promoter-TSS (ENSMUSG00000056234.15) -3693 ENSMUSG00000115760.1 ENSMUSG00000115760 ENSMUST00000227860 Gm18909 processed_pseudogene Interval_32224 chr11 106302535 106303199 + 0 NA Intergenic Intergenic -1002 ENSMUSG00000020713.6 ENSMUSG00000020713 ENSMUST00000103071 Gh protein_coding Interval_12033 chr1 188994707 188995495 + 0 NA TTS (ENSMUSG00000026608.13) protein_coding-TTS (ENSMUSG00000026608.13) 12740 ENSMUSG00000026608.13 ENSMUSG00000026608 ENSMUST00000193273 Kctd3 protein_coding Interval_111915 chr4 32511761 32511960 + 0 NA intron (ENSMUSG00000040270.16, intron 2 of 4) protein_coding-intron (ENSMUSG00000040270.16, intron 4 of 7) -2927 ENSMUSG00000084611.1 ENSMUSG00000084611 ENSMUST00000122662 Gm24371 misc_RNA Interval_20006 chr10 111911881 111914560 + 0 NA Intergenic Intergenic 24206 ENSMUSG00000112628.1 ENSMUSG00000112628 ENSMUST00000217819 Gm47880 processed_pseudogene Interval_44084 chr13 40774488 40775379 + 0 NA Intergenic Intergenic -3107 ENSMUSG00000090475.1 ENSMUSG00000090475 ENSMUST00000164699 Gm6245 processed_pseudogene Interval_144534 chr7 25746321 25746566 + 0 NA intron (ENSMUSG00000040725.13, intron 3 of 14) protein_coding-intron (ENSMUSG00000040725.13, intron 3 of 14) 8314 ENSMUSG00000040725.13 ENSMUSG00000040725 ENSMUST00000206041 Hnrnpul1 protein_coding Interval_83192 chr18 82675026 82675277 + 0 NA intron (ENSMUSG00000041258.18, intron 3 of 31) protein_coding-intron (ENSMUSG00000041258.18, intron 3 of 29) 8417 ENSMUSG00000041258.18 ENSMUSG00000041258 ENSMUST00000225002 Zfp236 protein_coding Interval_27169 chr11 63678592 63679461 + 0 NA Intergenic Intergenic -78103 ENSMUSG00000082256.1 ENSMUSG00000082256 ENSMUST00000119770 Gm12287 processed_pseudogene Interval_49917 chr13 118252998 118254085 + 0 NA Intergenic Intergenic -133089 ENSMUSG00000097411.2 ENSMUSG00000097411 ENSMUST00000181168 B430218F22Rik antisense Interval_139691 chr6 107106773 107107081 + 0 NA Intergenic Intergenic -12812 ENSMUSG00000107981.1 ENSMUSG00000107981 ENSMUST00000203999 Gm6064 processed_pseudogene Interval_24637 chr11 35494694 35494929 + 0 NA intron (ENSMUSG00000056427.10, intron 2 of 3) protein_coding-intron (ENSMUSG00000056427.10, intron 4 of 35) -122005 ENSMUSG00000065583.1 ENSMUSG00000065583 ENSMUST00000083649 Mir218-2 miRNA Interval_65856 chr16 29822614 29823247 + 0 NA intron (ENSMUSG00000097307.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000097307.1, intron 1 of 1) 11798 ENSMUSG00000116891.1 ENSMUSG00000116891 ENSMUST00000232318 Gm32679 lincRNA Interval_145477 chr7 35080899 35081147 + 0 NA promoter-TSS (ENSMUSG00000093153.1) miRNA-promoter-TSS (ENSMUSG00000093153.1) -887 ENSMUSG00000093153.1 ENSMUSG00000093153 ENSMUST00000175412 Gm25033 miRNA Interval_66225 chr16 32430154 32431428 + 0 NA promoter-TSS (ENSMUSG00000005615.15) protein_coding-promoter-TSS (ENSMUSG00000005615.15) 10996 ENSMUSG00000014075.15 ENSMUSG00000014075 ENSMUST00000131204 Tctex1d2 protein_coding Interval_73498 chr17 38047825 38048051 + 0 NA Intergenic Intergenic 12141 ENSMUSG00000081724.4 ENSMUSG00000081724 ENSMUST00000122318 Olfr129 protein_coding Interval_94139 chr2 84632918 84633295 + 0 NA intron (ENSMUSG00000101645.1, intron 2 of 20) protein_coding-intron (ENSMUSG00000034101.14, intron 1 of 18) -23409 ENSMUSG00000034101.14 ENSMUSG00000034101 ENSMUST00000149317 Ctnnd1 protein_coding Interval_168116 chr9 77185971 77186323 + 0 NA intron (ENSMUSG00000032355.16, intron 3 of 6) protein_coding-intron (ENSMUSG00000032355.16, intron 4 of 7) 88956 ENSMUSG00000099138.1 ENSMUSG00000099138 ENSMUST00000183550 Gm5746 processed_pseudogene Interval_173019 chrX 63739883 63740197 + 0 NA Intergenic Intergenic 307866 ENSMUSG00000083346.3 ENSMUSG00000083346 ENSMUST00000119230 Gm8260 processed_pseudogene Interval_165659 chr9 50739070 50739801 + 0 NA promoter-TSS (ENSMUSG00000032064.17) protein_coding-promoter-TSS (ENSMUSG00000032064.17) 7086 ENSMUSG00000032062.3 ENSMUSG00000032062 ENSMUST00000215877 2310030G06Rik protein_coding Interval_122574 chr5 23858229 23860111 + 0 NA Intergenic Intergenic 6960 ENSMUSG00000095205.1 ENSMUSG00000095205 ENSMUST00000175580 Snord93 snoRNA Interval_66139 chr16 31905515 31907189 + 0 NA Intergenic Intergenic -18637 ENSMUSG00000083890.1 ENSMUSG00000083890 ENSMUST00000120250 Gm15703 processed_pseudogene Interval_17779 chr10 80033208 80034487 + 0 NA Intergenic Intergenic 5854 ENSMUSG00000004667.18 ENSMUSG00000004667 ENSMUST00000152843 Polr2e protein_coding Interval_98137 chr2 148691397 148691662 + 0 NA exon (ENSMUSG00000027439.9, exon 6 of 6) protein_coding-exon (ENSMUSG00000027439.9, exon 6 of 6) 6917 ENSMUSG00000027439.9 ENSMUSG00000027439 ENSMUST00000151362 Gzf1 protein_coding Interval_162512 chr9 3469500 3469871 + 0 NA intron (ENSMUSG00000025898.6, intron 16 of 17) protein_coding-intron (ENSMUSG00000025898.6, intron 16 of 17) 27778 ENSMUSG00000110660.1 ENSMUSG00000110660 ENSMUST00000211968 Gm5362 processed_pseudogene Interval_112677 chr4 44011617 44013672 + 0 NA promoter-TSS (ENSMUSG00000028478.18) protein_coding-promoter-TSS (ENSMUSG00000028478.18) 1 ENSMUSG00000028478.18 ENSMUSG00000028478 ENSMUST00000107845 Clta protein_coding Interval_135625 chr6 41741446 41741952 + 0 NA Intergenic Intergenic 33478 ENSMUSG00000045479.7 ENSMUSG00000045479 ENSMUST00000050412 Olfr459 protein_coding Interval_166148 chr9 57056095 57056636 + 0 NA TTS (ENSMUSG00000074284.6) antisense-TTS (ENSMUSG00000074284.6) 15601 ENSMUSG00000074284.6 ENSMUSG00000074284 ENSMUST00000135527 Gm10658 antisense Interval_156979 chr8 63713066 63713437 + 0 NA intron (ENSMUSG00000109825.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000109825.1, intron 1 of 3) 26326 ENSMUSG00000109825.1 ENSMUSG00000109825 ENSMUST00000210048 Gm45589 lincRNA Interval_3500 chr1 59070749 59071454 + 0 NA TTS (ENSMUSG00000077616.1) snoRNA-TTS (ENSMUSG00000077616.1) 113 ENSMUSG00000077616.1 ENSMUSG00000077616 ENSMUST00000104428 Gm25502 snoRNA Interval_162933 chr9 13540580 13541573 + 0 NA intron (ENSMUSG00000031925.17, intron 1 of 4) protein_coding-intron (ENSMUSG00000031925.17, intron 1 of 4) 21140 ENSMUSG00000111223.1 ENSMUSG00000111223 ENSMUST00000213741 Gm47089 TEC Interval_161080 chr8 117342521 117343773 + 0 NA intron (ENSMUSG00000034390.16, intron 1 of 10) protein_coding-intron (ENSMUSG00000034390.16, intron 1 of 20) -80269 ENSMUSG00000034390.16 ENSMUSG00000034390 ENSMUST00000212884 Cmip protein_coding Interval_122444 chr5 22726115 22726778 + 0 NA promoter-TSS (ENSMUSG00000104913.1) processed_pseudogene-promoter-TSS (ENSMUSG00000104913.1) -278 ENSMUSG00000104913.1 ENSMUSG00000104913 ENSMUST00000198588 Gm6560 processed_pseudogene Interval_27376 chr11 67074968 67075267 + 0 NA Intergenic Intergenic -3183 ENSMUSG00000020908.14 ENSMUSG00000020908 ENSMUST00000165221 Myh3 protein_coding Interval_757 chr1 10717607 10717818 + 0 NA intron (ENSMUSG00000042501.12, intron 1 of 9) protein_coding-intron (ENSMUSG00000042501.12, intron 1 of 10) 2233 ENSMUSG00000042501.12 ENSMUSG00000042501 ENSMUST00000140938 Cpa6 protein_coding Interval_149449 chr7 98671714 98672524 + 0 NA Intergenic Intergenic 8528 ENSMUSG00000109101.1 ENSMUSG00000109101 ENSMUST00000207234 Gm45132 TEC Interval_86623 chr19 42121440 42121867 + 0 NA exon (ENSMUSG00000025178.9, exon 9 of 9) protein_coding-exon (ENSMUSG00000025178.9, exon 9 of 9) 6975 ENSMUSG00000025178.9 ENSMUSG00000025178 ENSMUST00000238085 Pi4k2a protein_coding Interval_146951 chr7 56194173 56194414 + 0 NA exon (ENSMUSG00000030451.16, exon 69 of 93) protein_coding-exon (ENSMUSG00000030451.16, exon 69 of 93) 22960 ENSMUSG00000108347.1 ENSMUSG00000108347 ENSMUST00000206781 Gm19187 processed_pseudogene Interval_28382 chr11 75509878 75511173 + 0 NA promoter-TSS (ENSMUSG00000038195.6) protein_coding-promoter-TSS (ENSMUSG00000038195.6) 58 ENSMUSG00000038195.6 ENSMUSG00000038195 ENSMUST00000156923 Rilp protein_coding Interval_117240 chr4 120882159 120882444 + 0 NA intron (ENSMUSG00000032890.17, intron 1 of 5) protein_coding-intron (ENSMUSG00000032890.17, intron 3 of 7) 4432 ENSMUSG00000032890.17 ENSMUSG00000032890 ENSMUST00000171363 Rims3 protein_coding Interval_125645 chr5 73006767 73008722 + 0 NA intron (ENSMUSG00000029219.10, intron 1 of 2) protein_coding-intron (ENSMUSG00000029219.10, intron 1 of 2) 841 ENSMUSG00000029219.10 ENSMUSG00000029219 ENSMUST00000201304 Slc10a4 protein_coding Interval_127168 chr5 100781400 100782888 + 0 NA TTS (ENSMUSG00000035266.16) protein_coding-TTS (ENSMUSG00000035266.16) 10582 ENSMUSG00000035266.16 ENSMUSG00000035266 ENSMUST00000144948 Helq protein_coding Interval_132265 chr5 143731617 143732996 + 0 NA promoter-TSS (ENSMUSG00000051306.7) protein_coding-promoter-TSS (ENSMUSG00000051306.7) -4289 ENSMUSG00000051306.7 ENSMUSG00000051306 ENSMUST00000129606 Usp42 protein_coding Interval_143036 chr6 148786380 148786734 + 0 NA intron (ENSMUSG00000040029.15, intron 7 of 11) protein_coding-intron (ENSMUSG00000040029.15, intron 20 of 24) 13275 ENSMUSG00000040029.15 ENSMUSG00000040029 ENSMUST00000205196 Ipo8 protein_coding Interval_33281 chr11 115683897 115684136 + 0 NA intron (ENSMUSG00000059923.13, intron 2 of 3) protein_coding-intron (ENSMUSG00000059923.13, intron 2 of 5) 15912 ENSMUSG00000059923.13 ENSMUSG00000059923 ENSMUST00000135065 Grb2 protein_coding Interval_145080 chr7 29926587 29927273 + 0 NA promoter-TSS (ENSMUSG00000109105.1) TEC-promoter-TSS (ENSMUSG00000109105.1) -48 ENSMUSG00000109105.1 ENSMUSG00000109105 ENSMUST00000208490 Gm44873 TEC Interval_165932 chr9 54764229 54766145 + 0 NA intron (ENSMUSG00000032291.8, intron 1 of 3) protein_coding-intron (ENSMUSG00000032291.8, intron 1 of 3) 439 ENSMUSG00000032291.8 ENSMUSG00000032291 ENSMUST00000034830 Crabp1 protein_coding Interval_25945 chr11 52919656 52920085 + 0 NA intron (ENSMUSG00000036264.9, intron 3 of 15) protein_coding-intron (ENSMUSG00000036264.9, intron 3 of 15) 155236 ENSMUSG00000036264.9 ENSMUSG00000036264 ENSMUST00000036796 Fstl4 protein_coding Interval_45942 chr13 59509876 59510404 + 0 NA intron (ENSMUSG00000021557.15, intron 11 of 17) protein_coding-intron (ENSMUSG00000021557.15, intron 11 of 25) -44852 ENSMUSG00000021557.15 ENSMUSG00000021557 ENSMUST00000163284 Agtpbp1 protein_coding Interval_86287 chr19 38405207 38406178 + 0 NA TTS (ENSMUSG00000044026.3) protein_coding-TTS (ENSMUSG00000044026.3) 9651 ENSMUSG00000044026.3 ENSMUSG00000044026 ENSMUST00000236865 Slc35g1 protein_coding Interval_24361 chr11 32669311 32669819 + 0 NA intron (ENSMUSG00000020271.17, intron 2 of 4) protein_coding-intron (ENSMUSG00000020271.17, intron 1 of 13) 26661 ENSMUSG00000020271.17 ENSMUSG00000020271 ENSMUST00000143290 Fbxw11 protein_coding Interval_126584 chr5 90397058 90397296 + 0 NA promoter-TSS (ENSMUSG00000106725.1) TEC-promoter-TSS (ENSMUSG00000106725.1) -96 ENSMUSG00000106725.1 ENSMUSG00000106725 ENSMUST00000201590 Gm43363 TEC Interval_136077 chr6 50536071 50537309 + 0 NA Intergenic Intergenic 3344 ENSMUSG00000077357.1 ENSMUSG00000077357 ENSMUST00000104169 Gm26289 snoRNA Interval_124555 chr5 50476425 50477402 + 0 NA intron (ENSMUSG00000105423.4, intron 10 of 10) processed_transcript-intron (ENSMUSG00000105423.4, intron 10 of 10) -40560 ENSMUSG00000106345.1 ENSMUSG00000106345 ENSMUST00000199679 Gm42459 processed_pseudogene Interval_95074 chr2 103727972 103728375 + 0 NA intron (ENSMUSG00000027185.15, intron 21 of 26) protein_coding-intron (ENSMUSG00000027185.15, intron 21 of 28) 13138 ENSMUSG00000032724.5 ENSMUSG00000032724 ENSMUST00000131122 Abtb2 protein_coding Interval_89726 chr2 25022062 25023197 + 0 NA intron (ENSMUSG00000036833.16, intron 20 of 21) protein_coding-intron (ENSMUSG00000036833.16, intron 20 of 34) 8824 ENSMUSG00000089513.1 ENSMUSG00000089513 ENSMUST00000158888 Gm24875 snRNA Interval_65494 chr16 22789499 22790090 + 0 NA Intergenic Intergenic 21783 ENSMUSG00000033501.5 ENSMUSG00000033501 ENSMUST00000040592 Crygs protein_coding Interval_129132 chr5 117616778 117617070 + 0 NA exon (ENSMUSG00000061578.8, exon 5 of 21) protein_coding-exon (ENSMUSG00000061578.8, exon 5 of 21) 96225 ENSMUSG00000107199.1 ENSMUSG00000107199 ENSMUST00000201553 Gm42550 TEC Interval_146016 chr7 43229448 43229670 + 0 NA Intergenic Intergenic 15520 ENSMUSG00000074887.4 ENSMUSG00000074887 ENSMUST00000163106 EU599041 lincRNA Interval_49830 chr13 116793305 116793589 + 0 NA Intergenic Intergenic 44731 ENSMUSG00000114290.1 ENSMUSG00000114290 ENSMUST00000224552 4930435F18Rik lincRNA Interval_41675 chr12 117637028 117638223 + 0 NA intron (ENSMUSG00000041992.9, intron 7 of 8) protein_coding-intron (ENSMUSG00000041992.9, intron 9 of 27) 35586 ENSMUSG00000113575.1 ENSMUSG00000113575 ENSMUST00000223270 A930023M06Rik sense_intronic Interval_108625 chr3 129634413 129635343 + 0 NA TTS (ENSMUSG00000041220.10) protein_coding-TTS (ENSMUSG00000041220.10) 49363 ENSMUSG00000092701.1 ENSMUSG00000092701 ENSMUST00000174960 Gm24515 miRNA Interval_51080 chr14 22110639 22110828 + 0 NA intron (ENSMUSG00000063458.13, intron 2 of 3) protein_coding-intron (ENSMUSG00000063458.13, intron 2 of 6) -74630 ENSMUSG00000114205.1 ENSMUSG00000114205 ENSMUST00000225573 Gm7480 antisense Interval_36597 chr12 51113329 51113612 + 0 NA Intergenic Intergenic 21232 ENSMUSG00000112926.1 ENSMUSG00000112926 ENSMUST00000218047 Gm7172 processed_pseudogene Interval_62517 chr15 93958520 93959122 + 0 NA intron (ENSMUSG00000115965.1, intron 2 of 2) lincRNA-intron (ENSMUSG00000115965.1, intron 2 of 2) 5887 ENSMUSG00000115965.1 ENSMUSG00000115965 ENSMUST00000229885 Gm30564 lincRNA Interval_155172 chr8 27195128 27195761 + 0 NA Intergenic Intergenic -20803 ENSMUSG00000031488.14 ENSMUSG00000031488 ENSMUST00000211646 Rab11fip1 protein_coding Interval_13626 chr10 20264541 20265273 + 0 NA intron (ENSMUSG00000019996.17, intron 1 of 3) protein_coding-intron (ENSMUSG00000019996.17, intron 8 of 17) 21724 ENSMUSG00000111447.1 ENSMUSG00000111447 ENSMUST00000215889 Gm48249 antisense Interval_40303 chr12 103353631 103353882 + 0 NA intron (ENSMUSG00000021200.14, intron 1 of 9) protein_coding-intron (ENSMUSG00000021200.14, intron 1 of 9) -15016 ENSMUSG00000110677.1 ENSMUSG00000110677 ENSMUST00000213009 Gm45777 unitary_pseudogene Interval_83341 chr18 84389658 84389970 + 0 NA intron (ENSMUSG00000048410.17, intron 4 of 8) protein_coding-intron (ENSMUSG00000048410.17, intron 2 of 2) -13668 ENSMUSG00000102951.1 ENSMUSG00000102951 ENSMUST00000193817 Gm37216 TEC Interval_115615 chr4 101400195 101400612 + 0 NA Intergenic Intergenic -2678 ENSMUSG00000084758.1 ENSMUSG00000084758 ENSMUST00000124786 Gm12798 lincRNA Interval_66655 chr16 35887812 35889287 + 0 NA Intergenic Intergenic -2865 ENSMUSG00000116728.1 ENSMUSG00000116728 ENSMUST00000232076 Gm41467 processed_pseudogene Interval_122242 chr5 20603291 20604529 + 0 NA intron (ENSMUSG00000040003.18, intron 13 of 15) protein_coding-intron (ENSMUSG00000040003.18, intron 18 of 22) 15314 ENSMUSG00000106240.1 ENSMUSG00000106240 ENSMUST00000196129 Gm3544 processed_pseudogene Interval_80642 chr18 45054341 45054632 + 0 NA intron (ENSMUSG00000118013.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000118013.1, intron 1 of 2) -9470 ENSMUSG00000118188.1 ENSMUSG00000118188 ENSMUST00000236528 Gm50123 processed_pseudogene Interval_134457 chr6 28902786 28903023 + 0 NA intron (ENSMUSG00000001424.14, intron 16 of 16) protein_coding-intron (ENSMUSG00000001424.14, intron 16 of 16) -72559 ENSMUSG00000049939.6 ENSMUSG00000049939 ENSMUST00000062304 Lrrc4 protein_coding Interval_84748 chr19 16190650 16191530 + 0 NA intron (ENSMUSG00000024639.5, intron 1 of 2) protein_coding-intron (ENSMUSG00000024639.5, intron 1 of 6) -26285 ENSMUSG00000057990.4 ENSMUSG00000057990 ENSMUST00000075293 E030024N20Rik processed_pseudogene Interval_121830 chr5 8593608 8593915 + 0 NA intron (ENSMUSG00000040570.14, intron 2 of 10) protein_coding-intron (ENSMUSG00000040570.14, intron 2 of 9) 29191 ENSMUSG00000040570.14 ENSMUSG00000040570 ENSMUST00000115378 Rundc3b protein_coding Interval_33712 chr11 118029129 118029697 + 0 NA intron (ENSMUSG00000033987.16, intron 75 of 80) protein_coding-intron (ENSMUSG00000033987.16, intron 75 of 80) 17070 ENSMUSG00000017715.11 ENSMUSG00000017715 ENSMUST00000155507 Pgs1 protein_coding Interval_123031 chr5 28751701 28752153 + 0 NA intron (ENSMUSG00000097726.7, intron 3 of 6) antisense-intron (ENSMUSG00000097726.7, intron 3 of 6) 174654 ENSMUSG00000104587.1 ENSMUSG00000104587 ENSMUST00000197020 Gm43161 TEC Interval_85994 chr19 34816556 34816914 + 0 NA intron (ENSMUSG00000033610.16, intron 4 of 5) protein_coding-intron (ENSMUSG00000033610.16, intron 5 of 6) 4038 ENSMUSG00000065594.1 ENSMUSG00000065594 ENSMUST00000083660 Mir107 miRNA Interval_99807 chr2 165042195 165042399 + 0 NA Intergenic Intergenic -7468 ENSMUSG00000039804.15 ENSMUSG00000039804 ENSMUST00000141663 Ncoa5 protein_coding Interval_42293 chr13 11869791 11870072 + 0 NA intron (ENSMUSG00000021313.16, intron 7 of 24) protein_coding-intron (ENSMUSG00000021313.16, intron 8 of 104) -48197 ENSMUSG00000113269.1 ENSMUSG00000113269 ENSMUST00000221204 Gm47494 TEC Interval_27338 chr11 66613255 66613933 + 0 NA Intergenic Intergenic 49987 ENSMUSG00000080978.2 ENSMUSG00000080978 ENSMUST00000121380 Gm12297 processed_pseudogene Interval_118246 chr4 129785215 129785407 + 0 NA Intergenic Intergenic -22875 ENSMUSG00000099322.1 ENSMUSG00000099322 ENSMUST00000183434 Gm28017 miRNA Interval_22787 chr11 15517310 15517529 + 0 NA Intergenic Intergenic 35113 ENSMUSG00000083292.1 ENSMUSG00000083292 ENSMUST00000122400 Gm12010 processed_pseudogene Interval_87689 chr19 55060881 55061814 + 0 NA Intergenic Intergenic -38155 ENSMUSG00000118099.1 ENSMUSG00000118099 ENSMUST00000237370 Gm31356 antisense Interval_164338 chr9 35467423 35467624 + 0 NA intron (ENSMUSG00000038119.15, intron 9 of 10) protein_coding-intron (ENSMUSG00000038119.15, intron 7 of 18) -7362 ENSMUSG00000065934.1 ENSMUSG00000065934 ENSMUST00000084000 Gm25630 snRNA Interval_26170 chr11 54865905 54867227 + 0 NA promoter-TSS (ENSMUSG00000020267.6) protein_coding-promoter-TSS (ENSMUSG00000020267.6) 85 ENSMUSG00000020267.6 ENSMUSG00000020267 ENSMUST00000117710 Hint1 protein_coding Interval_86908 chr19 44759211 44760951 + 0 NA exon (ENSMUSG00000004231.15, exon 1 of 6) protein_coding-exon (ENSMUSG00000004231.15, exon 1 of 6) 4036 ENSMUSG00000004231.15 ENSMUSG00000004231 ENSMUST00000173346 Pax2 protein_coding Interval_114074 chr4 63132725 63133111 + 0 NA exon (ENSMUSG00000028358.15, exon 15 of 15) protein_coding-exon (ENSMUSG00000028358.15, exon 15 of 15) 12518 ENSMUSG00000028358.15 ENSMUSG00000028358 ENSMUST00000151324 Zfp618 protein_coding Interval_10854 chr1 176046296 176047534 + 0 NA intron (ENSMUSG00000055214.15, intron 4 of 4) protein_coding-intron (ENSMUSG00000055214.15, intron 4 of 9) -14192 ENSMUSG00000104363.1 ENSMUSG00000104363 ENSMUST00000192680 Gm38081 TEC Interval_46540 chr13 66944749 66945943 + 0 NA promoter-TSS (ENSMUSG00000021518.4) protein_coding-promoter-TSS (ENSMUSG00000021518.4) 23 ENSMUSG00000021518.4 ENSMUSG00000021518 ENSMUST00000224175 Ptdss1 protein_coding Interval_74895 chr17 57121832 57122127 + 0 NA Intergenic Intergenic 6861 ENSMUSG00000117064.1 ENSMUSG00000117064 ENSMUST00000233215 Gm49892 processed_pseudogene Interval_163224 chr9 18597972 18599052 + 0 NA intron (ENSMUSG00000109564.1, intron 9 of 77) protein_coding-intron (ENSMUSG00000109564.1, intron 11 of 79) 23899 ENSMUSG00000084743.1 ENSMUSG00000084743 ENSMUST00000122794 Gm25295 misc_RNA Interval_163415 chr9 21346599 21347486 + 0 NA promoter-TSS (ENSMUSG00000057193.8) protein_coding-promoter-TSS (ENSMUSG00000057193.8) 22142 ENSMUSG00000110915.1 ENSMUSG00000110915 ENSMUST00000217490 Gm36198 antisense Interval_12767 chr10 5161510 5162830 + 0 NA intron (ENSMUSG00000096054.3, intron 8 of 24) protein_coding-intron (ENSMUSG00000096054.3, intron 98 of 145) 23356 ENSMUSG00000096054.3 ENSMUSG00000096054 ENSMUST00000214945 Syne1 protein_coding Interval_162686 chr9 7804825 7806487 + 0 NA Intergenic Intergenic 21266 ENSMUSG00000093615.1 ENSMUSG00000093615 ENSMUST00000175907 Mir5618 miRNA Interval_161497 chr8 120735774 120736708 + 0 NA promoter-TSS (ENSMUSG00000041515.10) protein_coding-promoter-TSS (ENSMUSG00000041515.10) -118 ENSMUSG00000041515.10 ENSMUSG00000041515 ENSMUST00000160594 Irf8 protein_coding Interval_1806 chr1 33894589 33894938 + 0 NA intron (ENSMUSG00000042182.16, intron 1 of 2) protein_coding-intron (ENSMUSG00000042182.16, intron 1 of 6) -3646 ENSMUSG00000104416.1 ENSMUSG00000104416 ENSMUST00000195730 Gm37067 TEC Interval_143492 chr7 10354855 10355290 + 0 NA TTS (ENSMUSG00000110098.1) processed_pseudogene-TTS (ENSMUSG00000110098.1) 1110 ENSMUSG00000110098.1 ENSMUSG00000110098 ENSMUST00000209456 Gm45401 processed_pseudogene Interval_89350 chr2 19634846 19635036 + 0 NA intron (ENSMUSG00000086621.1, intron 4 of 5) antisense-intron (ENSMUSG00000086621.1, intron 4 of 5) 2045 ENSMUSG00000086621.1 ENSMUSG00000086621 ENSMUST00000147324 Gm13348 antisense Interval_7868 chr1 134277902 134278214 + 0 NA Intergenic Intergenic 2933 ENSMUSG00000096676.1 ENSMUSG00000096676 ENSMUST00000122560 Gm24517 snRNA Interval_140565 chr6 119564465 119566231 + 0 NA Intergenic Intergenic -5593 ENSMUSG00000108282.1 ENSMUSG00000108282 ENSMUST00000204314 Gm44317 antisense Interval_140570 chr6 119653207 119653622 + 0 NA intron (ENSMUSG00000030172.15, intron 11 of 15) protein_coding-intron (ENSMUSG00000030172.15, intron 15 of 18) -31309 ENSMUSG00000030172.15 ENSMUSG00000030172 ENSMUST00000183741 Erc1 protein_coding Interval_157619 chr8 71749569 71749885 + 0 NA Intergenic Intergenic -10391 ENSMUSG00000110473.1 ENSMUSG00000110473 ENSMUST00000212598 Gm29705 processed_pseudogene Interval_112933 chr4 46169272 46169481 + 0 NA intron (ENSMUSG00000028330.8, intron 5 of 7) protein_coding-intron (ENSMUSG00000028330.8, intron 20 of 22) 4180 ENSMUSG00000028330.8 ENSMUSG00000028330 ENSMUST00000133286 Ncbp1 protein_coding Interval_162866 chr9 10713648 10714127 + 0 NA intron (ENSMUSG00000039488.15, intron 1 of 20) protein_coding-intron (ENSMUSG00000039488.15, intron 1 of 24) -20753 ENSMUSG00000111209.1 ENSMUSG00000111209 ENSMUST00000213753 Gm7529 processed_pseudogene Interval_104455 chr3 65914568 65914932 + 0 NA Intergenic Intergenic 19158 ENSMUSG00000102566.1 ENSMUSG00000102566 ENSMUST00000194475 Gm37037 processed_pseudogene Interval_35453 chr12 21951002 21951715 + 0 NA Intergenic Intergenic -89555 ENSMUSG00000094691.1 ENSMUSG00000094691 ENSMUST00000177620 Gm22908 miRNA Interval_167438 chr9 69357771 69358264 + 0 NA intron (ENSMUSG00000086648.1, intron 2 of 2) protein_coding-intron (ENSMUSG00000032238.17, intron 3 of 10) 6230 ENSMUSG00000086648.1 ENSMUSG00000086648 ENSMUST00000152570 Gm15511 antisense Interval_130953 chr5 134237599 134238659 + 0 NA TTS (ENSMUSG00000060261.15) protein_coding-TTS (ENSMUSG00000060261.15) -15907 ENSMUSG00000015950.13 ENSMUSG00000015950 ENSMUST00000126934 Ncf1 protein_coding Interval_60271 chr15 71889535 71890913 + 0 NA intron (ENSMUSG00000079022.10, intron 27 of 52) protein_coding-intron (ENSMUSG00000079022.10, intron 38 of 63) 64175 ENSMUSG00000079022.10 ENSMUSG00000079022 ENSMUST00000162081 Col22a1 protein_coding Interval_143046 chr6 148895371 148896902 + 0 NA promoter-TSS (ENSMUSG00000030309.16) protein_coding-promoter-TSS (ENSMUSG00000030309.16) 26 ENSMUSG00000030309.16 ENSMUSG00000030309 ENSMUST00000122909 Caprin2 protein_coding Interval_139973 chr6 113134447 113135057 + 0 NA intron (ENSMUSG00000034269.12, intron 1 of 1) protein_coding-intron (ENSMUSG00000034269.12, intron 16 of 21) 24335 ENSMUSG00000034269.12 ENSMUSG00000034269 ENSMUST00000156048 Setd5 protein_coding Interval_9733 chr1 161399758 161400670 + 0 NA intron (ENSMUSG00000026700.4, intron 1 of 2) protein_coding-intron (ENSMUSG00000026700.4, intron 1 of 2) 4805 ENSMUSG00000026700.4 ENSMUSG00000026700 ENSMUST00000028024 Tnfsf4 protein_coding Interval_150810 chr7 114873644 114874028 + 0 NA Intergenic Intergenic -19265 ENSMUSG00000108683.1 ENSMUSG00000108683 ENSMUST00000206842 Gm45017 lincRNA Interval_25040 chr11 43447449 43447757 + 0 NA exon (ENSMUSG00000020409.10, exon 16 of 16) protein_coding-exon (ENSMUSG00000020409.10, exon 16 of 16) 10260 ENSMUSG00000020409.10 ENSMUSG00000020409 ENSMUST00000136541 Slu7 protein_coding Interval_68427 chr16 76356278 76356511 + 0 NA intron (ENSMUSG00000048490.14, intron 1 of 3) protein_coding-intron (ENSMUSG00000048490.14, intron 1 of 3) 17432 ENSMUSG00000048490.14 ENSMUSG00000048490 ENSMUST00000145649 Nrip1 protein_coding Interval_104247 chr3 61839437 61840262 + 0 NA Intergenic Intergenic 229945 ENSMUSG00000104489.1 ENSMUSG00000104489 ENSMUST00000193786 Gm9700 processed_pseudogene Interval_59639 chr15 57079564 57079762 + 0 NA Intergenic Intergenic -73039 ENSMUSG00000115172.1 ENSMUSG00000115172 ENSMUST00000228364 Gm2582 lincRNA Interval_38354 chr12 77674435 77675340 + 0 NA Intergenic Intergenic -8174 ENSMUSG00000111903.1 ENSMUSG00000111903 ENSMUST00000219952 4930458K08Rik lincRNA Interval_165139 chr9 44767079 44767995 + 0 NA promoter-TSS (ENSMUSG00000002031.13) protein_coding-promoter-TSS (ENSMUSG00000002031.13) -2981 ENSMUSG00000032096.16 ENSMUSG00000032096 ENSMUST00000215140 Arcn1 protein_coding Interval_15850 chr10 58377758 58378586 + 0 NA intron (ENSMUSG00000019920.18, intron 1 of 9) protein_coding-intron (ENSMUSG00000019920.18, intron 1 of 9) 6718 ENSMUSG00000019920.18 ENSMUSG00000019920 ENSMUST00000148799 Lims1 protein_coding Interval_48528 chr13 99849338 99850154 + 0 NA Intergenic Intergenic 51345 ENSMUSG00000021647.7 ENSMUSG00000021647 ENSMUST00000224142 Cartpt protein_coding Interval_63153 chr15 99417790 99418220 + 0 NA Intergenic Intergenic 4531 ENSMUSG00000116039.1 ENSMUSG00000116039 ENSMUST00000231179 Gm49483 processed_pseudogene Interval_45590 chr13 56111917 56113199 + 0 NA intron (ENSMUSG00000015937.15, intron 2 of 3) protein_coding-intron (ENSMUSG00000015937.15, intron 2 of 8) 23803 ENSMUSG00000015937.15 ENSMUSG00000015937 ENSMUST00000154564 Macroh2a1 protein_coding Interval_163867 chr9 27298673 27300969 + 0 NA intron (ENSMUSG00000034275.18, intron 1 of 19) protein_coding-intron (ENSMUSG00000034275.18, intron 1 of 14) 617 ENSMUSG00000034275.18 ENSMUSG00000034275 ENSMUST00000214187 Igsf9b protein_coding Interval_8983 chr1 152889752 152890236 + 0 NA intron (ENSMUSG00000042772.15, intron 1 of 22) protein_coding-intron (ENSMUSG00000042772.15, intron 1 of 21) -9696 ENSMUSG00000100394.1 ENSMUSG00000100394 ENSMUST00000185888 Gm28791 sense_intronic Interval_79711 chr18 34673392 34673950 + 0 NA Intergenic Intergenic 26271 ENSMUSG00000064857.1 ENSMUSG00000064857 ENSMUST00000082923 n-R5s25 rRNA Interval_61310 chr15 80750223 80751347 + 0 NA intron (ENSMUSG00000047888.10, intron 2 of 24) protein_coding-intron (ENSMUSG00000047888.10, intron 2 of 24) 38514 ENSMUSG00000116480.1 ENSMUSG00000116480 ENSMUST00000230620 Gm49512 sense_intronic Interval_144354 chr7 24642552 24642784 + 0 NA Intergenic Intergenic -4752 ENSMUSG00000097215.1 ENSMUSG00000097215 ENSMUST00000180699 Gm26550 antisense Interval_79188 chr18 25534638 25535028 + 0 NA intron (ENSMUSG00000024268.16, intron 3 of 11) protein_coding-intron (ENSMUSG00000024268.16, intron 3 of 12) -33594 ENSMUSG00000024268.16 ENSMUSG00000024268 ENSMUST00000224143 Celf4 protein_coding Interval_67397 chr16 48314264 48314515 + 0 NA intron (ENSMUSG00000072419.5, intron 5 of 7) protein_coding-intron (ENSMUSG00000072419.5, intron 4 of 6) 10481 ENSMUSG00000072419.5 ENSMUSG00000072419 ENSMUST00000097175 Dppa2 protein_coding Interval_133873 chr6 13870399 13872288 + 0 NA promoter-TSS (ENSMUSG00000097616.7) lincRNA-promoter-TSS (ENSMUSG00000097616.7) 122 ENSMUSG00000052419.7 ENSMUSG00000052419 ENSMUST00000185361 2610001J05Rik protein_coding Interval_69278 chr16 91850504 91851067 + 0 NA intron (ENSMUSG00000022957.20, intron 4 of 5) protein_coding-intron (ENSMUSG00000022957.20, intron 20 of 28) -53278 ENSMUSG00000022957.20 ENSMUSG00000022957 ENSMUST00000137575 Itsn1 protein_coding Interval_77516 chr17 90624635 90626018 + 0 NA intron (ENSMUSG00000024109.18, intron 1 of 3) protein_coding-intron (ENSMUSG00000024109.18, intron 8 of 20) -57569 ENSMUSG00000093716.1 ENSMUSG00000093716 ENSMUST00000175818 Gm19815 processed_pseudogene Interval_35215 chr12 18336591 18337303 + 0 NA intron (ENSMUSG00000113592.1, intron 2 of 2) unprocessed_pseudogene-intron (ENSMUSG00000113592.1, intron 2 of 2) 4074 ENSMUSG00000113592.1 ENSMUSG00000113592 ENSMUST00000223004 Gm7093 unprocessed_pseudogene Interval_142333 chr6 140680661 140681393 + 0 NA Intergenic Intergenic 44289 ENSMUSG00000030232.18 ENSMUSG00000030232 ENSMUST00000160772 Aebp2 protein_coding Interval_51306 chr14 25874160 25874355 + 0 NA exon (ENSMUSG00000021866.15, exon 6 of 15) protein_coding-exon (ENSMUSG00000021866.15, exon 6 of 15) -3991 ENSMUSG00000098609.1 ENSMUSG00000098609 ENSMUST00000184083 Anxa11os antisense Interval_150805 chr7 114816723 114818370 + 0 NA intron (ENSMUSG00000048782.15, intron 7 of 12) protein_coding-intron (ENSMUSG00000048782.15, intron 7 of 12) 14968 ENSMUSG00000077644.1 ENSMUSG00000077644 ENSMUST00000104456 Gm24982 snoRNA Interval_144496 chr7 25463717 25464014 + 0 NA TTS (ENSMUSG00000074272.10) protein_coding-TTS (ENSMUSG00000074272.10) 13718 ENSMUSG00000074272.10 ENSMUSG00000074272 ENSMUST00000206981 Ceacam1 protein_coding Interval_141778 chr6 134407413 134407707 + 0 NA intron (ENSMUSG00000107767.1, intron 2 of 2) protein_coding-intron (ENSMUSG00000030200.13, intron 2 of 6) -4145 ENSMUSG00000107666.1 ENSMUSG00000107666 ENSMUST00000203352 4933406J09Rik antisense Interval_23649 chr11 24074420 24077753 + 0 NA promoter-TSS (ENSMUSG00000085167.1) lincRNA-promoter-TSS (ENSMUSG00000085167.1) -473 ENSMUSG00000085167.1 ENSMUSG00000085167 ENSMUST00000148087 Gm12063 lincRNA Interval_10078 chr1 165658382 165659062 + 0 NA intron (ENSMUSG00000040723.14, intron 3 of 5) protein_coding-intron (ENSMUSG00000040723.14, intron 4 of 6) -14034 ENSMUSG00000104517.1 ENSMUSG00000104517 ENSMUST00000192126 Gm18407 processed_pseudogene Interval_138011 chr6 84119743 84120423 + 0 NA intron (ENSMUSG00000033788.15, intron 30 of 55) protein_coding-intron (ENSMUSG00000033788.15, intron 30 of 54) -13076 ENSMUSG00000087001.2 ENSMUSG00000087001 ENSMUST00000137673 Gm15475 antisense Interval_75527 chr17 67788200 67788842 + 0 NA intron (ENSMUSG00000032796.8, intron 36 of 62) protein_coding-intron (ENSMUSG00000032796.8, intron 36 of 62) 62542 ENSMUSG00000090955.1 ENSMUSG00000090955 ENSMUST00000166414 Gm17097 processed_pseudogene Interval_65214 chr16 20568763 20569431 + 0 NA TTS (ENSMUSG00000116604.1) lincRNA-TTS (ENSMUSG00000116604.1) -2313 ENSMUSG00000116538.1 ENSMUSG00000116538 ENSMUST00000231937 Gm49746 processed_pseudogene Interval_19003 chr10 93718179 93718543 + 0 NA intron (ENSMUSG00000020019.4, intron 5 of 9) protein_coding-intron (ENSMUSG00000020019.4, intron 5 of 9) 9846 ENSMUSG00000086891.2 ENSMUSG00000086891 ENSMUST00000131387 Gm15963 antisense Interval_112394 chr4 41026237 41026656 + 0 NA TTS (ENSMUSG00000028423.15) protein_coding-TTS (ENSMUSG00000028423.15) 9864 ENSMUSG00000028427.13 ENSMUSG00000028427 ENSMUST00000149517 Aqp7 protein_coding Interval_117801 chr4 126296436 126297241 + 0 NA intron (ENSMUSG00000056174.8, intron 2 of 3) protein_coding-intron (ENSMUSG00000056174.8, intron 2 of 3) -3692 ENSMUSG00000056174.8 ENSMUSG00000056174 ENSMUST00000128435 Col8a2 protein_coding Interval_50581 chr14 16016863 16017070 + 0 NA intron (ENSMUSG00000114390.1, intron 2 of 3) lincRNA-intron (ENSMUSG00000114390.1, intron 1 of 1) 20231 ENSMUSG00000114390.1 ENSMUSG00000114390 ENSMUST00000223757 1700062C10Rik lincRNA Interval_141926 chr6 135406703 135406919 + 0 NA Intergenic Intergenic 44266 ENSMUSG00000030208.15 ENSMUSG00000030208 ENSMUST00000111907 Emp1 protein_coding Interval_103036 chr3 34661257 34661640 + 0 NA intron (ENSMUSG00000105265.4, intron 1 of 1) processed_transcript-intron (ENSMUSG00000105265.4, intron 3 of 3) 2841 ENSMUSG00000105284.1 ENSMUSG00000105284 ENSMUST00000196779 Gm42693 TEC Interval_29394 chr11 83639277 83639710 + 0 NA Intergenic Intergenic 6128 ENSMUSG00000081906.2 ENSMUSG00000081906 ENSMUST00000182502 Rpl9-ps1 protein_coding Interval_137166 chr6 68828630 68830250 + 0 NA Intergenic Intergenic 5867 ENSMUSG00000076534.6 ENSMUSG00000076534 ENSMUST00000103335 Igkv12-89 IG_V_gene Interval_21768 chr11 4239281 4240002 + 0 NA TTS (ENSMUSG00000058755.3) protein_coding-TTS (ENSMUSG00000058755.3) 3221 ENSMUSG00000058755.3 ENSMUSG00000058755 ENSMUST00000075221 Osm protein_coding Interval_32071 chr11 105102698 105103236 + 0 NA intron (ENSMUSG00000040838.10, intron 183 of 187) protein_coding-intron (ENSMUSG00000020690.12, intron 5 of 9) -9689 ENSMUSG00000020690.12 ENSMUSG00000020690 ENSMUST00000154543 Efcab3 protein_coding Interval_148992 chr7 90886555 90887743 + 0 NA promoter-TSS (ENSMUSG00000109125.1) lincRNA-promoter-TSS (ENSMUSG00000109125.1) 77 ENSMUSG00000109125.1 ENSMUSG00000109125 ENSMUST00000208630 Gm45159 lincRNA Interval_55677 chr14 98912371 98913683 + 0 NA intron (ENSMUSG00000115242.1, intron 2 of 5) lincRNA-intron (ENSMUSG00000115242.1, intron 2 of 5) 7918 ENSMUSG00000115242.1 ENSMUSG00000115242 ENSMUST00000226462 Gm49018 lincRNA Interval_40001 chr12 100398779 100399323 + 0 NA intron (ENSMUSG00000033530.8, intron 9 of 9) protein_coding-intron (ENSMUSG00000033530.8, intron 9 of 19) -29299 ENSMUSG00000113917.1 ENSMUSG00000113917 ENSMUST00000220812 Gm48382 TEC Interval_35886 chr12 31607905 31608813 + 0 NA intron (ENSMUSG00000020650.15, intron 6 of 7) protein_coding-intron (ENSMUSG00000020650.15, intron 5 of 6) -6610 ENSMUSG00000020650.15 ENSMUSG00000020650 ENSMUST00000218543 Bcap29 protein_coding Interval_138919 chr6 93540814 93541022 + 0 NA Intergenic Intergenic 31345 ENSMUSG00000088630.1 ENSMUSG00000088630 ENSMUST00000158005 Gm22312 snoRNA Interval_52051 chr14 34874653 34874870 + 0 NA intron (ENSMUSG00000041078.7, intron 2 of 15) protein_coding-intron (ENSMUSG00000041078.7, intron 2 of 15) -19848 ENSMUSG00000065481.1 ENSMUSG00000065481 ENSMUST00000083547 Mir346 miRNA Interval_156747 chr8 57811231 57811535 + 0 NA intron (ENSMUSG00000096914.3, intron 2 of 3) protein_coding-intron (ENSMUSG00000096914.3, intron 5 of 7) 31675 ENSMUSG00000096914.3 ENSMUSG00000096914 ENSMUST00000203398 Galntl6 protein_coding Interval_53211 chr14 55148356 55149089 + 0 NA Intergenic Intergenic 12886 ENSMUSG00000077492.1 ENSMUSG00000077492 ENSMUST00000104304 Gm23596 snoRNA Interval_135215 chr6 37592479 37593152 + 0 NA Intergenic Intergenic 51401 ENSMUSG00000106889.1 ENSMUSG00000106889 ENSMUST00000201541 Gm7463 processed_pseudogene Interval_130731 chr5 130015281 130016786 + 0 NA TTS (ENSMUSG00000025533.15) protein_coding-TTS (ENSMUSG00000025533.15) 8312 ENSMUSG00000025533.15 ENSMUSG00000025533 ENSMUST00000162230 Asl protein_coding Interval_13915 chr10 24621749 24622395 + 0 NA Intergenic Intergenic 26346 ENSMUSG00000019997.11 ENSMUSG00000019997 ENSMUST00000129142 Ccn2 protein_coding Interval_35360 chr12 21029570 21029916 + 0 NA intron (ENSMUSG00000116627.1, intron 3 of 3) protein_coding-intron (ENSMUSG00000052632.16, intron 1 of 9) -13216 ENSMUSG00000092229.3 ENSMUSG00000092229 ENSMUST00000174304 Gm5977 transcribed_unprocessed_pseudogene Interval_50652 chr14 17512708 17512995 + 0 NA Intergenic Intergenic 258271 ENSMUSG00000114281.1 ENSMUSG00000114281 ENSMUST00000225878 Gm48320 processed_pseudogene Interval_42056 chr13 6998374 6998827 + 0 NA intron (ENSMUSG00000114017.1, intron 2 of 3) lincRNA-intron (ENSMUSG00000114017.1, intron 2 of 3) -72749 ENSMUSG00000113932.1 ENSMUSG00000113932 ENSMUST00000220700 2900024D18Rik TEC Interval_159033 chr8 88981618 88982002 + 0 NA Intergenic Intergenic -42925 ENSMUSG00000099078.1 ENSMUSG00000099078 ENSMUST00000183771 Mir8110 miRNA Interval_70034 chr17 4833698 4834052 + 0 NA Intergenic Intergenic -40916 ENSMUSG00000116649.1 ENSMUSG00000116649 ENSMUST00000232212 Gm49780 processed_pseudogene Interval_124600 chr5 52216671 52216913 + 0 NA promoter-TSS (ENSMUSG00000106464.1) lincRNA-promoter-TSS (ENSMUSG00000106464.1) -358 ENSMUSG00000106464.1 ENSMUSG00000106464 ENSMUST00000197171 C130083M11Rik lincRNA Interval_103200 chr3 36612895 36613784 + 0 NA promoter-TSS (ENSMUSG00000037325.10) protein_coding-promoter-TSS (ENSMUSG00000037325.10) -36054 ENSMUSG00000037325.10 ENSMUSG00000037325 ENSMUST00000142333 Bbs7 protein_coding Interval_93586 chr2 74674950 74675878 + 0 NA exon (ENSMUSG00000001823.5, exon 1 of 2) protein_coding-exon (ENSMUSG00000001823.5, exon 1 of 2) 401 ENSMUSG00000001823.5 ENSMUSG00000001823 ENSMUST00000001878 Hoxd12 protein_coding Interval_61261 chr15 80315901 80316687 + 0 NA intron (ENSMUSG00000022416.15, intron 2 of 36) protein_coding-intron (ENSMUSG00000022416.15, intron 2 of 36) -52048 ENSMUSG00000051518.8 ENSMUSG00000051518 ENSMUST00000229962 Rps19bp1 protein_coding Interval_102005 chr3 14869582 14870442 + 0 NA intron (ENSMUSG00000027559.5, intron 1 of 2) protein_coding-intron (ENSMUSG00000027559.5, intron 5 of 6) 834 ENSMUSG00000027559.5 ENSMUSG00000027559 ENSMUST00000195834 Car3 protein_coding Interval_18135 chr10 82890217 82890541 + 0 NA intron (ENSMUSG00000020250.10, intron 13 of 14) protein_coding-intron (ENSMUSG00000020250.10, intron 12 of 13) 23753 ENSMUSG00000109864.1 ENSMUSG00000109864 ENSMUST00000211623 Eid3 protein_coding Interval_28748 chr11 78059878 78060944 + 0 NA TTS (ENSMUSG00000061981.14) protein_coding-TTS (ENSMUSG00000061981.14) -12594 ENSMUSG00000065401.1 ENSMUSG00000065401 ENSMUST00000083467 Mir144 miRNA Interval_3461 chr1 58560236 58560434 + 0 NA intron (ENSMUSG00000038174.14, intron 1 of 3) protein_coding-intron (ENSMUSG00000038174.14, intron 2 of 11) 4885 ENSMUSG00000038174.14 ENSMUSG00000038174 ENSMUST00000159185 Fam126b protein_coding Interval_140071 chr6 113822350 113823007 + 0 NA intron (ENSMUSG00000030302.16, intron 2 of 19) protein_coding-intron (ENSMUSG00000030302.16, intron 2 of 19) -22994 ENSMUSG00000108297.1 ENSMUSG00000108297 ENSMUST00000204957 Gm44167 sense_intronic Interval_61809 chr15 84299298 84300331 + 0 NA intron (ENSMUSG00000022438.6, intron 8 of 12) protein_coding-intron (ENSMUSG00000022438.6, intron 8 of 12) 23538 ENSMUSG00000089267.1 ENSMUSG00000089267 ENSMUST00000158642 Gm22890 snoRNA Interval_154493 chr8 18654475 18655593 + 0 NA intron (ENSMUSG00000087300.1, intron 2 of 3) protein_coding-intron (ENSMUSG00000039842.15, intron 9 of 13) 1955 ENSMUSG00000090334.1 ENSMUSG00000090334 ENSMUST00000164712 Gm17149 processed_pseudogene Interval_139307 chr6 98346031 98346491 + 0 NA Intergenic Intergenic -3602 ENSMUSG00000090667.2 ENSMUSG00000090667 ENSMUST00000204914 Gm765 protein_coding Interval_4176 chr1 71250302 71250621 + 0 NA intron (ENSMUSG00000050296.14, intron 48 of 52) protein_coding-intron (ENSMUSG00000050296.14, intron 48 of 52) 85325 ENSMUSG00000050296.14 ENSMUSG00000050296 ENSMUST00000189102 Abca12 protein_coding Interval_162674 chr9 7747112 7747716 + 0 NA Intergenic Intergenic -4311 ENSMUSG00000074516.6 ENSMUSG00000074516 ENSMUST00000213318 Gm10709 processed_pseudogene Interval_163891 chr9 27728725 27729550 + 0 NA Intergenic Intergenic -62010 ENSMUSG00000062257.13 ENSMUSG00000062257 ENSMUST00000126845 Opcml protein_coding Interval_30434 chr11 94340163 94340526 + 0 NA TTS (ENSMUSG00000020864.13) protein_coding-TTS (ENSMUSG00000020864.13) 6891 ENSMUSG00000020864.13 ENSMUSG00000020864 ENSMUST00000124087 Ankrd40 protein_coding Interval_129199 chr5 118146980 118147413 + 0 NA intron (ENSMUSG00000032867.8, intron 1 of 7) protein_coding-intron (ENSMUSG00000032867.8, intron 1 of 10) 1698 ENSMUSG00000088293.1 ENSMUSG00000088293 ENSMUST00000157668 Gm26411 snRNA Interval_102171 chr3 19134089 19134341 + 0 NA exon (ENSMUSG00000027599.9, exon 7 of 7) protein_coding-exon (ENSMUSG00000027599.9, exon 7 of 7) 9684 ENSMUSG00000103135.1 ENSMUSG00000103135 ENSMUST00000193065 Gm37979 TEC Interval_11138 chr1 179592697 179593486 + 0 NA promoter-TSS (ENSMUSG00000038949.8) protein_coding-promoter-TSS (ENSMUSG00000038949.8) 46582 ENSMUSG00000038949.8 ENSMUSG00000038949 ENSMUST00000143270 Cnst protein_coding Interval_116527 chr4 115047026 115048298 + 0 NA Intergenic Intergenic -11846 ENSMUSG00000028717.12 ENSMUSG00000028717 ENSMUST00000162489 Tal1 protein_coding Interval_3212 chr1 54909118 54909382 + 0 NA intron (ENSMUSG00000052331.14, intron 1 of 7) protein_coding-intron (ENSMUSG00000052331.14, intron 1 of 27) 7344 ENSMUSG00000102642.1 ENSMUSG00000102642 ENSMUST00000193052 A130048G24Rik TEC Interval_121453 chr4 155904469 155905335 + 0 NA promoter-TSS (ENSMUSG00000029033.16) protein_coding-promoter-TSS (ENSMUSG00000029033.16) 2243 ENSMUSG00000029033.16 ENSMUSG00000029033 ENSMUST00000140855 Acap3 protein_coding Interval_169941 chr9 103108369 103109026 + 0 NA Intergenic Intergenic -3090 ENSMUSG00000032549.7 ENSMUSG00000032549 ENSMUST00000035155 Rab6b protein_coding Interval_52254 chr14 41041313 41041760 + 0 NA Intergenic Intergenic -12117 ENSMUSG00000114196.1 ENSMUSG00000114196 ENSMUST00000224095 Gm47547 antisense Interval_92668 chr2 62341576 62342257 + 0 NA intron (ENSMUSG00000035000.8, intron 1 of 1) protein_coding-intron (ENSMUSG00000035000.8, intron 23 of 25) 3230 ENSMUSG00000035000.8 ENSMUSG00000035000 ENSMUST00000151818 Dpp4 protein_coding Interval_103867 chr3 53870942 53872497 + 0 NA Intergenic Intergenic -7957 ENSMUSG00000027746.13 ENSMUSG00000027746 ENSMUST00000152414 Ufm1 protein_coding Interval_137945 chr6 83618481 83619006 + 0 NA Intergenic Intergenic -17035 ENSMUSG00000108609.1 ENSMUSG00000108609 ENSMUST00000206919 Gm7424 processed_pseudogene Interval_138764 chr6 91700794 91702005 + 0 NA promoter-TSS (ENSMUSG00000030096.8) protein_coding-promoter-TSS (ENSMUSG00000030096.8) -8007 ENSMUSG00000108526.1 ENSMUSG00000108526 ENSMUST00000206938 Gm45828 TEC Interval_78240 chr18 10609339 10610712 + 0 NA promoter-TSS (ENSMUSG00000024293.16) protein_coding-promoter-TSS (ENSMUSG00000024293.16) 38 ENSMUSG00000024293.16 ENSMUSG00000024293 ENSMUST00000234151 Esco1 protein_coding Interval_137515 chr6 72841234 72842279 + 0 NA TTS (ENSMUSG00000055239.10) protein_coding-TTS (ENSMUSG00000055239.10) 54163 ENSMUSG00000107610.1 ENSMUSG00000107610 ENSMUST00000205107 D530018E20Rik TEC Interval_152371 chr7 132495628 132496050 + 0 NA intron (ENSMUSG00000030849.18, intron 2 of 6) protein_coding-intron (ENSMUSG00000030849.18, intron 2 of 6) 12181 ENSMUSG00000108858.1 ENSMUSG00000108858 ENSMUST00000209135 Gm4587 processed_pseudogene Interval_150602 chr7 112750585 112750975 + 0 NA intron (ENSMUSG00000055320.18, intron 1 of 13) protein_coding-intron (ENSMUSG00000055320.18, intron 1 of 13) 36829 ENSMUSG00000106046.1 ENSMUSG00000106046 ENSMUST00000199696 Gm44462 miRNA Interval_48646 chr13 100819011 100819213 + 0 NA intron (ENSMUSG00000021629.10, intron 5 of 14) protein_coding-intron (ENSMUSG00000021629.10, intron 5 of 15) 14228 ENSMUSG00000021629.10 ENSMUSG00000021629 ENSMUST00000224177 Slc30a5 protein_coding Interval_111761 chr4 27793613 27793809 + 0 NA Intergenic Intergenic 73944 ENSMUSG00000082674.1 ENSMUSG00000082674 ENSMUST00000117094 Gm11914 processed_pseudogene Interval_72825 chr17 32415461 32416225 + 0 NA TTS (ENSMUSG00000079563.10) protein_coding-TTS (ENSMUSG00000079563.10) 5132 ENSMUSG00000079563.10 ENSMUSG00000079563 ENSMUST00000236703 Pglyrp2 protein_coding Interval_135298 chr6 38156926 38158824 + 0 NA TTS (ENSMUSG00000063455.16) protein_coding-TTS (ENSMUSG00000063455.16) 39492 ENSMUSG00000087924.1 ENSMUSG00000087924 ENSMUST00000157299 Gm23231 snRNA Interval_139212 chr6 97227478 97227860 + 0 NA intron (ENSMUSG00000035199.6, intron 1 of 2) protein_coding-intron (ENSMUSG00000035199.6, intron 1 of 2) 16980 ENSMUSG00000035199.6 ENSMUSG00000035199 ENSMUST00000044681 Arl6ip5 protein_coding Interval_149832 chr7 101885943 101886626 + 0 NA intron (ENSMUSG00000030649.18, intron 1 of 5) protein_coding-intron (ENSMUSG00000030649.18, intron 1 of 5) 5100 ENSMUSG00000093388.1 ENSMUSG00000093388 ENSMUST00000174949 Gm22655 miRNA Interval_6599 chr1 118072897 118073622 + 0 NA Intergenic Intergenic 9141 ENSMUSG00000101590.1 ENSMUSG00000101590 ENSMUST00000186304 Gm29104 unprocessed_pseudogene Interval_29190 chr11 81272246 81272477 + 0 NA intron (ENSMUSG00000020704.13, intron 1 of 9) protein_coding-intron (ENSMUSG00000020704.13, intron 1 of 9) -112652 ENSMUSG00000086971.1 ENSMUSG00000086971 ENSMUST00000141593 4930527B05Rik antisense Interval_63547 chr15 101973565 101974171 + 0 NA Intergenic Intergenic -19581 ENSMUSG00000050463.9 ENSMUSG00000050463 ENSMUST00000164932 Krt78 protein_coding Interval_109010 chr3 134966143 134966790 + 0 NA intron (ENSMUSG00000106569.1, intron 1 of 1) processed_pseudogene-intron (ENSMUSG00000106569.1, intron 1 of 1) 608 ENSMUSG00000106569.1 ENSMUSG00000106569 ENSMUST00000200594 Gm43036 processed_pseudogene Interval_27268 chr11 65126250 65127204 + 0 NA intron (ENSMUSG00000033389.16, intron 1 of 20) protein_coding-intron (ENSMUSG00000033389.16, intron 1 of 20) 33164 ENSMUSG00000020548.10 ENSMUSG00000020548 ENSMUST00000108696 1700086D15Rik protein_coding Interval_97464 chr2 136832509 136832876 + 0 NA Intergenic Intergenic 52987 ENSMUSG00000116563.1 ENSMUSG00000116563 ENSMUST00000231720 AL731706.2 protein_coding Interval_92499 chr2 60133262 60133664 + 0 NA promoter-TSS (ENSMUSG00000082330.1) processed_pseudogene-promoter-TSS (ENSMUSG00000082330.1) -592 ENSMUSG00000082330.1 ENSMUSG00000082330 ENSMUST00000119390 Ldha-ps processed_pseudogene Interval_91424 chr2 38691665 38692008 + 0 NA TTS (ENSMUSG00000026751.14) protein_coding-TTS (ENSMUSG00000026751.14) 19352 ENSMUSG00000026751.14 ENSMUSG00000026751 ENSMUST00000149690 Nr5a1 protein_coding Interval_108735 chr3 130797913 130798407 + 0 NA Intergenic Intergenic 38895 ENSMUSG00000105716.1 ENSMUSG00000105716 ENSMUST00000196697 Gm43522 lincRNA Interval_28906 chr11 79192113 79192484 + 0 NA Intergenic Intergenic -20498 ENSMUSG00000081000.1 ENSMUSG00000081000 ENSMUST00000121698 Gm11200 processed_pseudogene Interval_58691 chr15 37154303 37154973 + 0 NA Intergenic Intergenic 17766 ENSMUSG00000115848.1 ENSMUSG00000115848 ENSMUST00000227699 Gm9509 processed_pseudogene Interval_86524 chr19 41378581 41378931 + 0 NA intron (ENSMUSG00000025017.10, intron 1 of 8) protein_coding-intron (ENSMUSG00000025017.10, intron 1 of 16) 6346 ENSMUSG00000025017.10 ENSMUSG00000025017 ENSMUST00000235978 Pik3ap1 protein_coding Interval_161630 chr8 121673868 121674783 + 0 NA promoter-TSS (ENSMUSG00000110673.1) lincRNA-promoter-TSS (ENSMUSG00000110673.1) -237 ENSMUSG00000110673.1 ENSMUSG00000110673 ENSMUST00000211931 Gm45833 lincRNA Interval_32264 chr11 106595192 106595509 + 0 NA intron (ENSMUSG00000040548.16, intron 1 of 1) protein_coding-intron (ENSMUSG00000040548.16, intron 1 of 11) -28240 ENSMUSG00000040548.16 ENSMUSG00000040548 ENSMUST00000153870 Tex2 protein_coding Interval_60003 chr15 63661813 63662738 + 0 NA intron (ENSMUSG00000115520.2, intron 2 of 8) lincRNA-intron (ENSMUSG00000115520.2, intron 2 of 8) 30578 ENSMUSG00000095812.1 ENSMUSG00000095812 ENSMUST00000179326 Gm5473 processed_pseudogene Interval_81053 chr18 53346287 53348064 + 0 NA intron (ENSMUSG00000024535.16, intron 3 of 6) protein_coding-intron (ENSMUSG00000024535.16, intron 3 of 7) 70940 ENSMUSG00000024538.8 ENSMUSG00000024538 ENSMUST00000025419 Ppic protein_coding Interval_171570 chr9 119256313 119256626 + 0 NA intron (ENSMUSG00000036737.12, intron 3 of 8) protein_coding-intron (ENSMUSG00000036737.12, intron 10 of 17) 8303 ENSMUSG00000036737.12 ENSMUSG00000036737 ENSMUST00000143728 Oxsr1 protein_coding Interval_139727 chr6 108161729 108161921 + 0 NA intron (ENSMUSG00000030101.15, intron 2 of 7) protein_coding-intron (ENSMUSG00000030101.15, intron 3 of 8) -21316 ENSMUSG00000091845.1 ENSMUSG00000091845 ENSMUST00000025040 Rpl36-ps12 processed_pseudogene Interval_126311 chr5 86432661 86433316 + 0 NA intron (ENSMUSG00000072845.3, intron 3 of 8) protein_coding-intron (ENSMUSG00000072845.3, intron 3 of 8) -14643 ENSMUSG00000072845.3 ENSMUSG00000072845 ENSMUST00000198504 Tmprss11a protein_coding Interval_102423 chr3 25263462 25263757 + 0 NA Intergenic Intergenic -51004 ENSMUSG00000069083.4 ENSMUSG00000069083 ENSMUST00000091289 Gm10259 processed_pseudogene Interval_101949 chr3 12893723 12894424 + 0 NA promoter-TSS (ENSMUSG00000103950.1) processed_pseudogene-promoter-TSS (ENSMUSG00000103950.1) -659 ENSMUSG00000103950.1 ENSMUSG00000103950 ENSMUST00000192577 Gm8939 processed_pseudogene Interval_109524 chr3 143864632 143865115 + 0 NA Intergenic Intergenic -8122 ENSMUSG00000105492.1 ENSMUSG00000105492 ENSMUST00000200413 Gm2505 processed_pseudogene Interval_94224 chr2 85396946 85397168 + 0 NA TTS (ENSMUSG00000110978.1) unprocessed_pseudogene-TTS (ENSMUSG00000110978.1) 1559 ENSMUSG00000110978.1 ENSMUSG00000110978 ENSMUST00000215967 Olfr991-ps1 unprocessed_pseudogene Interval_140370 chr6 117534251 117534728 + 0 NA Intergenic Intergenic -33183 ENSMUSG00000054488.14 ENSMUSG00000054488 ENSMUST00000165995 Gm9946 lincRNA Interval_148039 chr7 78755343 78755603 + 0 NA Intergenic Intergenic 22893 ENSMUSG00000108536.1 ENSMUSG00000108536 ENSMUST00000205558 Gm45059 TEC Interval_119840 chr4 140405622 140407352 + 0 NA Intergenic Intergenic 15339 ENSMUSG00000086960.1 ENSMUSG00000086960 ENSMUST00000156409 Gm13017 lincRNA Interval_156391 chr8 47892847 47893362 + 0 NA intron (ENSMUSG00000031563.8, intron 4 of 22) protein_coding-intron (ENSMUSG00000031563.8, intron 4 of 22) -6078 ENSMUSG00000064519.1 ENSMUSG00000064519 ENSMUST00000082585 n-R5s97 rRNA Interval_126070 chr5 77217171 77218175 + 0 NA Intergenic Intergenic -6468 ENSMUSG00000053030.11 ENSMUSG00000053030 ENSMUST00000121825 Spink2 protein_coding Interval_108755 chr3 131077518 131078540 + 0 NA Intergenic Intergenic 34061 ENSMUSG00000106086.1 ENSMUSG00000106086 ENSMUST00000196419 Lef1os1 antisense Interval_92765 chr2 65237616 65239468 + 0 NA promoter-TSS (ENSMUSG00000034903.18) protein_coding-promoter-TSS (ENSMUSG00000034903.18) -214 ENSMUSG00000086881.1 ENSMUSG00000086881 ENSMUST00000137582 Gm13594 antisense Interval_40733 chr12 108012249 108013453 + 0 NA Intergenic Intergenic -9437 ENSMUSG00000048251.15 ENSMUSG00000048251 ENSMUST00000109891 Bcl11b protein_coding Interval_114596 chr4 82886249 82886446 + 0 NA Intergenic Intergenic -1199 ENSMUSG00000038192.5 ENSMUSG00000038192 ENSMUST00000048430 Cer1 protein_coding Interval_28352 chr11 75334806 75335108 + 0 NA intron (ENSMUSG00000000751.13, intron 4 of 6) protein_coding-intron (ENSMUSG00000000751.13, intron 5 of 17) 13338 ENSMUSG00000000751.13 ENSMUSG00000000751 ENSMUST00000149365 Rpa1 protein_coding Interval_79668 chr18 34372392 34374203 + 0 NA promoter-TSS (ENSMUSG00000005873.6) protein_coding-promoter-TSS (ENSMUSG00000005873.6) -799 ENSMUSG00000005873.6 ENSMUSG00000005873 ENSMUST00000235153 Reep5 protein_coding Interval_76018 chr17 74409696 74410153 + 0 NA promoter-TSS (ENSMUSG00000024069.14) protein_coding-promoter-TSS (ENSMUSG00000024069.14) 14279 ENSMUSG00000024069.14 ENSMUSG00000024069 ENSMUST00000233180 Slc30a6 protein_coding Interval_131882 chr5 140578993 140580435 + 0 NA Intergenic Intergenic -14643 ENSMUSG00000036586.6 ENSMUSG00000036586 ENSMUST00000042993 Grifin protein_coding Interval_8810 chr1 151328325 151329773 + 0 NA Intergenic Intergenic 15687 ENSMUSG00000100954.4 ENSMUSG00000100954 ENSMUST00000206952 Gm10138 antisense Interval_99842 chr2 165254020 165254479 + 0 NA Intergenic Intergenic 15927 ENSMUSG00000087800.1 ENSMUSG00000087800 ENSMUST00000157175 Gm25569 snoRNA Interval_99619 chr2 163618755 163619093 + 0 NA TTS (ENSMUSG00000017679.16) protein_coding-TTS (ENSMUSG00000017679.16) 16610 ENSMUSG00000017679.16 ENSMUSG00000017679 ENSMUST00000132904 Ttpal protein_coding Interval_99836 chr2 165215212 165216184 + 0 NA intron (ENSMUSG00000053166.14, intron 1 of 11) protein_coding-intron (ENSMUSG00000053166.14, intron 1 of 11) -34239 ENSMUSG00000053166.14 ENSMUSG00000053166 ENSMUST00000138643 Cdh22 protein_coding Interval_14230 chr10 29211457 29212077 + 0 NA promoter-TSS (ENSMUSG00000004360.9) protein_coding-promoter-TSS (ENSMUSG00000004360.9) 72 ENSMUSG00000004360.9 ENSMUSG00000004360 ENSMUST00000213489 9330159F19Rik protein_coding Interval_58577 chr15 36303618 36304588 + 0 NA Intergenic Intergenic 4479 ENSMUSG00000115162.1 ENSMUSG00000115162 ENSMUST00000227671 Gm9501 processed_pseudogene Interval_41728 chr12 118457571 118458381 + 0 NA Intergenic Intergenic 47058 ENSMUSG00000065348.1 ENSMUSG00000065348 ENSMUST00000083414 Gm25577 snRNA Interval_21239 chr10 127379983 127381513 + 0 NA promoter-TSS (ENSMUSG00000025404.15) protein_coding-promoter-TSS (ENSMUSG00000025404.15) -10317 ENSMUSG00000025405.9 ENSMUSG00000025405 ENSMUST00000026472 Inhbc protein_coding Interval_54454 chr14 69855287 69855932 + 0 NA intron (ENSMUSG00000022085.4, intron 3 of 6) protein_coding-intron (ENSMUSG00000022085.4, intron 3 of 6) 15189 ENSMUSG00000022085.4 ENSMUSG00000022085 ENSMUST00000022678 Pebp4 protein_coding Interval_57616 chr15 12848113 12849789 + 0 NA intron (ENSMUSG00000022191.16, intron 9 of 34) protein_coding-intron (ENSMUSG00000022191.16, intron 9 of 34) 6855 ENSMUSG00000104911.1 ENSMUSG00000104911 ENSMUST00000198820 Gm47288 miRNA Interval_13092 chr10 11300249 11300555 + 0 NA Intergenic Intergenic 19072 ENSMUSG00000047648.13 ENSMUSG00000047648 ENSMUST00000070300 Fbxo30 protein_coding Interval_96346 chr2 121832521 121832820 + 0 NA Intergenic Intergenic 34047 ENSMUSG00000086913.1 ENSMUSG00000086913 ENSMUST00000131514 Gm14019 antisense Interval_39994 chr12 100340207 100341813 + 0 NA intron (ENSMUSG00000033530.8, intron 17 of 20) protein_coding-intron (ENSMUSG00000033530.8, intron 17 of 19) 28742 ENSMUSG00000113917.1 ENSMUSG00000113917 ENSMUST00000220812 Gm48382 TEC Interval_30997 chr11 97632069 97632291 + 0 NA Intergenic Intergenic -2478 ENSMUSG00000043439.5 ENSMUSG00000043439 ENSMUST00000052281 Epop protein_coding Interval_92275 chr2 57904501 57904757 + 0 NA Intergenic Intergenic 81388 ENSMUSG00000110205.1 ENSMUSG00000110205 ENSMUST00000209502 Gm33594 lincRNA Interval_76481 chr17 80496635 80497879 + 0 NA Intergenic Intergenic -16804 ENSMUSG00000024241.7 ENSMUSG00000024241 ENSMUST00000234841 Sos1 protein_coding Interval_132855 chr5 148350301 148351780 + 0 NA intron (ENSMUSG00000041313.14, intron 2 of 5) protein_coding-intron (ENSMUSG00000041313.14, intron 3 of 12) 48751 ENSMUSG00000041313.14 ENSMUSG00000041313 ENSMUST00000201348 Slc7a1 protein_coding Interval_138929 chr6 93605074 93606699 + 0 NA Intergenic Intergenic 44339 ENSMUSG00000107739.1 ENSMUSG00000107739 ENSMUST00000203479 Gm7812 processed_pseudogene Interval_47921 chr13 94389765 94390726 + 0 NA intron (ENSMUSG00000021686.6, intron 1 of 26) protein_coding-intron (ENSMUSG00000021686.6, intron 1 of 26) -31322 ENSMUSG00000042857.3 ENSMUSG00000042857 ENSMUST00000221110 Gm9776 bidirectional_promoter_lncRNA Interval_117628 chr4 125132587 125132824 + 0 NA Intergenic Intergenic -10185 ENSMUSG00000042677.7 ENSMUSG00000042677 ENSMUST00000131685 Zc3h12a protein_coding Interval_103085 chr3 35143911 35144159 + 0 NA Intergenic Intergenic 132096 ENSMUSG00000105651.1 ENSMUSG00000105651 ENSMUST00000198307 1700017M07Rik lincRNA Interval_20556 chr10 118961707 118962219 + 0 NA Intergenic Intergenic -34820 ENSMUSG00000112854.1 ENSMUSG00000112854 ENSMUST00000219032 Gm38403 lincRNA Interval_168423 chr9 80185635 80186033 + 0 NA intron (ENSMUSG00000033577.18, intron 1 of 35) protein_coding-intron (ENSMUSG00000033577.18, intron 1 of 32) 20607 ENSMUSG00000033577.18 ENSMUSG00000033577 ENSMUST00000138650 Myo6 protein_coding Interval_53969 chr14 63910641 63910995 + 0 NA intron (ENSMUSG00000021958.5, intron 1 of 1) protein_coding-intron (ENSMUSG00000021958.5, intron 6 of 6) 11049 ENSMUSG00000021958.5 ENSMUSG00000021958 ENSMUST00000225564 Pinx1 protein_coding Interval_163111 chr9 15332784 15333275 + 0 NA exon (ENSMUSG00000046111.17, exon 1 of 13) protein_coding-exon (ENSMUSG00000046111.17, exon 1 of 13) 2456 ENSMUSG00000089702.1 ENSMUSG00000089702 ENSMUST00000066038 Gm16568 antisense Interval_38596 chr12 80342951 80344435 + 0 NA intron (ENSMUSG00000049106.7, intron 8 of 8) protein_coding-intron (ENSMUSG00000049106.7, intron 8 of 8) 32999 ENSMUSG00000049106.7 ENSMUSG00000049106 ENSMUST00000218498 Dcaf5 protein_coding Interval_47274 chr13 80419664 80421134 + 0 NA Intergenic Intergenic -72610 ENSMUSG00000114528.1 ENSMUSG00000114528 ENSMUST00000223876 Gm46388 processed_pseudogene Interval_143805 chr7 16425972 16427176 + 0 NA intron (ENSMUSG00000059273.9, intron 11 of 13) protein_coding-intron (ENSMUSG00000059273.9, intron 10 of 13) -9953 ENSMUSG00000109647.1 ENSMUSG00000109647 ENSMUST00000210059 Gm45510 antisense Interval_135685 chr6 43326544 43327285 + 0 NA Intergenic Intergenic -21779 ENSMUSG00000029736.15 ENSMUSG00000029736 ENSMUST00000172554 Nobox protein_coding Interval_80220 chr18 38365138 38365555 + 0 NA Intergenic Intergenic -4808 ENSMUSG00000118140.1 ENSMUSG00000118140 ENSMUST00000235767 Gm4949 processed_pseudogene Interval_40122 chr12 101782756 101783169 + 0 NA intron (ENSMUSG00000021186.9, intron 4 of 10) protein_coding-intron (ENSMUSG00000021186.9, intron 4 of 10) 35506 ENSMUSG00000021186.9 ENSMUSG00000021186 ENSMUST00000221373 Fbln5 protein_coding Interval_109058 chr3 135505457 135506695 + 0 NA intron (ENSMUSG00000028164.15, intron 1 of 2) protein_coding-intron (ENSMUSG00000028164.15, intron 1 of 16) 10423 ENSMUSG00000083045.1 ENSMUSG00000083045 ENSMUST00000120489 Gm16100 processed_pseudogene Interval_73604 chr17 41015559 41015786 + 0 NA Intergenic Intergenic -9366 ENSMUSG00000117119.1 ENSMUSG00000117119 ENSMUST00000233262 Gm49854 processed_pseudogene Interval_119531 chr4 138180290 138180674 + 0 NA promoter-TSS (ENSMUSG00000028760.16) protein_coding-promoter-TSS (ENSMUSG00000028760.16) 17273 ENSMUSG00000098513.1 ENSMUSG00000098513 ENSMUST00000184050 Mir6399 miRNA Interval_115727 chr4 103085391 103085871 + 0 NA intron (ENSMUSG00000035126.19, intron 1 of 1) protein_coding-intron (ENSMUSG00000035126.19, intron 6 of 15) -17896 ENSMUSG00000080744.1 ENSMUSG00000080744 ENSMUST00000119011 Gm12710 processed_pseudogene Interval_155885 chr8 40634312 40635383 + 0 NA promoter-TSS (ENSMUSG00000039431.16) protein_coding-promoter-TSS (ENSMUSG00000039431.16) -50 ENSMUSG00000039431.16 ENSMUSG00000039431 ENSMUST00000174537 Mtmr7 protein_coding Interval_132519 chr5 145686484 145686906 + 0 NA Intergenic Intergenic 33441 ENSMUSG00000075551.4 ENSMUSG00000075551 ENSMUST00000094111 Cyp3a41a protein_coding Interval_19249 chr10 95766166 95766525 + 0 NA intron (ENSMUSG00000101517.6, intron 1 of 5) lincRNA-intron (ENSMUSG00000101517.6, intron 1 of 5) 20268 ENSMUSG00000101517.6 ENSMUSG00000101517 ENSMUST00000185499 4732465J04Rik lincRNA Interval_163990 chr9 30480372 30481167 + 0 NA Intergenic Intergenic -9190 ENSMUSG00000111260.1 ENSMUSG00000111260 ENSMUST00000214310 Gm47714 processed_pseudogene Interval_72700 chr17 31623256 31624678 + 0 NA promoter-TSS (ENSMUSG00000024039.15) protein_coding-promoter-TSS (ENSMUSG00000024039.15) 9197 ENSMUSG00000024039.15 ENSMUSG00000024039 ENSMUST00000236909 Cbs protein_coding Interval_129749 chr5 122111336 122112310 + 0 NA promoter-TSS (ENSMUSG00000043036.13) protein_coding-promoter-TSS (ENSMUSG00000043036.13) -710 ENSMUSG00000043036.13 ENSMUSG00000043036 ENSMUST00000196608 Ccdc63 protein_coding Interval_38750 chr12 81907252 81907842 + 0 NA intron (ENSMUSG00000021140.9, intron 3 of 34) protein_coding-intron (ENSMUSG00000021140.9, intron 3 of 35) -65640 ENSMUSG00000021140.9 ENSMUSG00000021140 ENSMUST00000222468 Pcnx protein_coding Interval_159761 chr8 101495787 101495999 + 0 NA Intergenic Intergenic 43815 ENSMUSG00000087985.1 ENSMUSG00000087985 ENSMUST00000157360 Gm22223 snoRNA Interval_78026 chr18 7001097 7002767 + 0 NA TTS (ENSMUSG00000061013.6) protein_coding-TTS (ENSMUSG00000061013.6) -3031 ENSMUSG00000117356.1 ENSMUSG00000117356 ENSMUST00000234596 Gm46633 bidirectional_promoter_lncRNA Interval_55354 chr14 84415999 84416286 + 0 NA Intergenic Intergenic 24832 ENSMUSG00000115227.1 ENSMUSG00000115227 ENSMUST00000227972 Gm49057 processed_pseudogene Interval_98825 chr2 155346876 155347698 + 0 NA intron (ENSMUSG00000038383.16, intron 1 of 11) protein_coding-intron (ENSMUSG00000038383.16, intron 1 of 11) -9530 ENSMUSG00000076216.1 ENSMUSG00000076216 ENSMUST00000102261 Mir695 miRNA Interval_34251 chr11 121616747 121617102 + 0 NA exon (ENSMUSG00000046605.14, exon 13 of 13) protein_coding-exon (ENSMUSG00000046605.14, exon 13 of 13) 18608 ENSMUSG00000039230.14 ENSMUSG00000039230 ENSMUST00000151666 Tbcd protein_coding Interval_62456 chr15 93137191 93137954 + 0 NA promoter-TSS (ENSMUSG00000116124.1) processed_transcript-promoter-TSS (ENSMUSG00000116124.1) -30 ENSMUSG00000116124.1 ENSMUSG00000116124 ENSMUST00000230014 Gm49420 processed_transcript Interval_141399 chr6 128023324 128023554 + 0 NA intron (ENSMUSG00000030352.15, intron 2 of 2) protein_coding-intron (ENSMUSG00000030352.15, intron 3 of 8) 11566 ENSMUSG00000030352.15 ENSMUSG00000030352 ENSMUST00000127075 Tspan9 protein_coding Interval_111392 chr4 20342842 20343787 + 0 NA promoter-TSS (ENSMUSG00000086017.1) antisense-promoter-TSS (ENSMUSG00000086017.1) -392 ENSMUSG00000086017.1 ENSMUSG00000086017 ENSMUST00000141819 Gm11872 antisense Interval_130610 chr5 129177621 129178299 + 0 NA intron (ENSMUSG00000044017.16, intron 15 of 24) protein_coding-intron (ENSMUSG00000044017.16, intron 16 of 25) -49443 ENSMUSG00000060419.8 ENSMUSG00000060419 ENSMUST00000140155 Rps16-ps2 processed_pseudogene Interval_11152 chr1 179696507 179697272 + 0 NA TTS (ENSMUSG00000087236.3) protein_coding-TTS (ENSMUSG00000087236.3) 3391 ENSMUSG00000087236.3 ENSMUSG00000087236 ENSMUST00000223392 Kif28 protein_coding Interval_105014 chr3 79798613 79798809 + 0 NA Intergenic Intergenic -36222 ENSMUSG00000077461.1 ENSMUSG00000077461 ENSMUST00000104273 Gm26420 snRNA Interval_5903 chr1 93100388 93102195 + 0 NA intron (ENSMUSG00000014602.15, intron 1 of 4) protein_coding-intron (ENSMUSG00000014602.15, intron 1 of 47) 22812 ENSMUSG00000101378.1 ENSMUSG00000101378 ENSMUST00000191586 Gm28086 lincRNA Interval_167308 chr9 67208246 67209690 + 0 NA intron (ENSMUSG00000111556.1, intron 2 of 2) lincRNA-intron (ENSMUSG00000111556.1, intron 2 of 2) 27758 ENSMUSG00000076379.2 ENSMUSG00000076379 ENSMUST00000102424 Mir190a miRNA Interval_114546 chr4 82420255 82420450 + 0 NA intron (ENSMUSG00000008575.17, intron 2 of 4) protein_coding-intron (ENSMUSG00000008575.17, intron 2 of 11) -19058 ENSMUSG00000084595.1 ENSMUSG00000084595 ENSMUST00000122646 n-R5s188 rRNA Interval_34003 chr11 119936976 119938648 + 0 NA promoter-TSS (ENSMUSG00000086924.1) lincRNA-promoter-TSS (ENSMUSG00000086924.1) -699 ENSMUSG00000086924.1 ENSMUSG00000086924 ENSMUST00000143428 Gm11766 lincRNA Interval_89287 chr2 18867324 18867528 + 0 NA intron (ENSMUSG00000026737.12, intron 5 of 9) protein_coding-intron (ENSMUSG00000026737.12, intron 5 of 9) 38848 ENSMUSG00000026737.12 ENSMUSG00000026737 ENSMUST00000152981 Pip4k2a protein_coding Interval_64285 chr16 10226539 10228058 + 0 NA TTS (ENSMUSG00000039200.16) protein_coding-TTS (ENSMUSG00000039200.16) 226 ENSMUSG00000115943.1 ENSMUSG00000115943 ENSMUST00000230210 Gm49455 antisense Interval_110096 chr3 153260420 153261218 + 0 NA intron (ENSMUSG00000052544.9, intron 3 of 4) protein_coding-intron (ENSMUSG00000052544.9, intron 2 of 2) 37830 ENSMUSG00000105023.1 ENSMUSG00000105023 ENSMUST00000197231 1700012D16Rik sense_intronic Interval_39220 chr12 85969234 85971045 + 0 NA intron (ENSMUSG00000097902.2, intron 1 of 1) protein_coding-intron (ENSMUSG00000012609.19, intron 29 of 33) 8138 ENSMUSG00000012609.19 ENSMUSG00000012609 ENSMUST00000220906 Ttll5 protein_coding Interval_43722 chr13 35773516 35774165 + 0 NA exon (ENSMUSG00000114373.1, exon 2 of 2) antisense-exon (ENSMUSG00000114373.1, exon 2 of 2) 3056 ENSMUSG00000114373.1 ENSMUSG00000114373 ENSMUST00000224745 Gm48708 antisense Interval_130043 chr5 123879580 123881013 + 0 NA promoter-TSS (ENSMUSG00000049241.5) protein_coding-promoter-TSS (ENSMUSG00000049241.5) -276 ENSMUSG00000049241.5 ENSMUSG00000049241 ENSMUST00000164267 Hcar1 protein_coding Interval_33584 chr11 117366482 117367240 + 0 NA Intergenic Intergenic 34433 ENSMUSG00000059248.13 ENSMUSG00000059248 ENSMUST00000129387 Septin9 protein_coding Interval_153204 chr7 142386767 142388450 + 0 NA intron (ENSMUSG00000007891.16, intron 1 of 2) protein_coding-intron (ENSMUSG00000007891.16, intron 1 of 8) 211 ENSMUSG00000007891.16 ENSMUSG00000007891 ENSMUST00000153679 Ctsd protein_coding Interval_906 chr1 13088193 13088392 + 0 NA Intergenic Intergenic 19454 ENSMUSG00000099498.1 ENSMUSG00000099498 ENSMUST00000187394 Gm29283 lincRNA Interval_113380 chr4 53971021 53971266 + 0 NA Intergenic Intergenic -32914 ENSMUSG00000089552.1 ENSMUSG00000089552 ENSMUST00000158927 Gm24177 snoRNA Interval_135628 chr6 41807233 41807846 + 0 NA Intergenic Intergenic -32362 ENSMUSG00000045479.7 ENSMUSG00000045479 ENSMUST00000050412 Olfr459 protein_coding Interval_21816 chr11 4525361 4525588 + 0 NA intron (ENSMUSG00000034354.17, intron 4 of 17) protein_coding-intron (ENSMUSG00000034354.17, intron 4 of 17) -36306 ENSMUSG00000081974.3 ENSMUSG00000081974 ENSMUST00000122068 Gm11960 transcribed_processed_pseudogene Interval_4040 chr1 66770179 66770378 + 0 NA exon (ENSMUSG00000102374.1, exon 1 of 1) TEC-exon (ENSMUSG00000102374.1, exon 1 of 1) -1547 ENSMUSG00000102559.1 ENSMUSG00000102559 ENSMUST00000195411 Gm37570 TEC Interval_53288 chr14 55794244 55794663 + 0 NA Intergenic Intergenic -8101 ENSMUSG00000022221.14 ENSMUSG00000022221 ENSMUST00000226203 Ripk3 protein_coding Interval_50315 chr14 11807253 11808155 + 0 NA intron (ENSMUSG00000021745.14, intron 2 of 3) protein_coding-intron (ENSMUSG00000021745.14, intron 2 of 29) 39761 ENSMUSG00000114310.1 ENSMUSG00000114310 ENSMUST00000225152 Gm48602 TEC Interval_165907 chr9 54559648 54560870 + 0 NA promoter-TSS (ENSMUSG00000037493.6) protein_coding-promoter-TSS (ENSMUSG00000037493.6) -41 ENSMUSG00000037493.6 ENSMUSG00000037493 ENSMUST00000041901 Cib2 protein_coding Interval_162957 chr9 13715706 13717168 + 0 NA Intergenic Intergenic 11005 ENSMUSG00000111698.1 ENSMUSG00000111698 ENSMUST00000215676 Gm47105 processed_pseudogene Interval_163456 chr9 21526141 21526443 + 0 NA promoter-TSS (ENSMUSG00000057191.13) protein_coding-promoter-TSS (ENSMUSG00000057191.13) 91 ENSMUSG00000057191.13 ENSMUSG00000057191 ENSMUST00000076326 AB124611 protein_coding Interval_166013 chr9 55446907 55448513 + 0 NA Intergenic Intergenic 64410 ENSMUSG00000032314.14 ENSMUSG00000032314 ENSMUST00000142587 Etfa protein_coding Interval_28796 chr11 78377659 78378327 + 0 NA intron (ENSMUSG00000002057.4, intron 1 of 8) protein_coding-intron (ENSMUSG00000002057.4, intron 1 of 8) 8565 ENSMUSG00000002057.4 ENSMUSG00000002057 ENSMUST00000108294 Foxn1 protein_coding Interval_174855 chrY 808794 810142 + 0 NA Intergenic Intergenic -9181 ENSMUSG00000069053.11 ENSMUSG00000069053 ENSMUST00000115894 Uba1y protein_coding Interval_29784 chr11 86763158 86763660 + 0 NA Intergenic Intergenic -36926 ENSMUSG00000047126.17 ENSMUSG00000047126 ENSMUST00000133501 Cltc protein_coding Interval_122250 chr5 20667059 20667447 + 0 NA intron (ENSMUSG00000040003.18, intron 5 of 5) protein_coding-intron (ENSMUSG00000040003.18, intron 22 of 22) -35024 ENSMUSG00000073174.6 ENSMUSG00000073174 ENSMUST00000189302 Gm29254 3prime_overlapping_ncRNA Interval_39411 chr12 87252827 87253111 + 0 NA intron (ENSMUSG00000021038.17, intron 8 of 11) protein_coding-intron (ENSMUSG00000021038.17, intron 7 of 18) 13284 ENSMUSG00000021038.17 ENSMUSG00000021038 ENSMUST00000222350 Vipas39 protein_coding Interval_111914 chr4 32502482 32503301 + 0 NA TTS (ENSMUSG00000040270.16) protein_coding-TTS (ENSMUSG00000040270.16) -11896 ENSMUSG00000084611.1 ENSMUSG00000084611 ENSMUST00000122662 Gm24371 misc_RNA Interval_96263 chr2 121044589 121045966 + 0 NA TTS (ENSMUSG00000053675.8) protein_coding-TTS (ENSMUSG00000053675.8) -4522 ENSMUSG00000081313.1 ENSMUSG00000081313 ENSMUST00000119778 Gm14213 processed_pseudogene Interval_7836 chr1 134053050 134053659 + 0 NA Intergenic Intergenic 15858 ENSMUSG00000041559.7 ENSMUSG00000041559 ENSMUST00000162779 Fmod protein_coding Interval_89768 chr2 25310381 25312189 + 0 NA exon (ENSMUSG00000026959.13, exon 3 of 3) protein_coding-exon (ENSMUSG00000026959.13, exon 3 of 3) 7841 ENSMUSG00000026959.13 ENSMUSG00000026959 ENSMUST00000144402 Grin1 protein_coding Interval_30884 chr11 97052083 97052802 + 0 NA promoter-TSS (ENSMUSG00000038534.19) protein_coding-promoter-TSS (ENSMUSG00000038534.19) -1010 ENSMUSG00000085262.1 ENSMUSG00000085262 ENSMUST00000139752 Gm11574 processed_transcript Interval_89290 chr2 18884182 18884500 + 0 NA intron (ENSMUSG00000026737.12, intron 2 of 4) protein_coding-intron (ENSMUSG00000026737.12, intron 4 of 9) 21933 ENSMUSG00000026737.12 ENSMUSG00000026737 ENSMUST00000152981 Pip4k2a protein_coding Interval_70737 chr17 14083929 14084621 + 0 NA Intergenic Intergenic 22175 ENSMUSG00000099476.1 ENSMUSG00000099476 ENSMUST00000188802 4930488N24Rik unprocessed_pseudogene Interval_80626 chr18 44759101 44759660 + 0 NA exon (ENSMUSG00000071856.10, exon 2 of 19) protein_coding-exon (ENSMUSG00000071856.10, exon 2 of 19) -61753 ENSMUSG00000117832.1 ENSMUSG00000117832 ENSMUST00000237858 Gm50263 processed_pseudogene Interval_36608 chr12 51396035 51396247 + 0 NA exon (ENSMUSG00000020952.10, exon 6 of 8) protein_coding-exon (ENSMUSG00000020952.10, exon 6 of 8) 18560 ENSMUSG00000020952.10 ENSMUSG00000020952 ENSMUST00000218138 Scfd1 protein_coding Interval_20035 chr10 112344650 112344868 + 0 NA intron (ENSMUSG00000035681.7, intron 1 of 4) protein_coding-intron (ENSMUSG00000035681.7, intron 2 of 4) -111497 ENSMUSG00000035681.7 ENSMUSG00000035681 ENSMUST00000218827 Kcnc2 protein_coding Interval_102158 chr3 18852586 18853595 + 0 NA Intergenic Intergenic 100013 ENSMUSG00000103264.1 ENSMUSG00000103264 ENSMUST00000194363 Gm30341 processed_pseudogene Interval_138770 chr6 91728846 91730159 + 0 NA intron (ENSMUSG00000030096.8, intron 2 of 5) protein_coding-intron (ENSMUSG00000030096.8, intron 5 of 14) -16224 ENSMUSG00000108574.1 ENSMUSG00000108574 ENSMUST00000205549 Gm44981 TEC Interval_168963 chr9 89792924 89793523 + 0 NA Intergenic Intergenic 9105 ENSMUSG00000065596.1 ENSMUSG00000065596 ENSMUST00000083662 Mir184 miRNA Interval_61648 chr15 83148792 83150230 + 0 NA promoter-TSS (ENSMUSG00000041815.14) protein_coding-promoter-TSS (ENSMUSG00000041815.14) -133 ENSMUSG00000065176.1 ENSMUSG00000065176 ENSMUST00000083242 Rnu12 snRNA Interval_70070 chr17 5131330 5131939 + 0 NA intron (ENSMUSG00000069729.14, intron 4 of 19) protein_coding-intron (ENSMUSG00000069729.14, intron 4 of 18) -19524 ENSMUSG00000081783.2 ENSMUSG00000081783 ENSMUST00000122283 Gm15599 processed_pseudogene Interval_45926 chr13 59351160 59351801 + 0 NA Intergenic Intergenic -21237 ENSMUSG00000114240.1 ENSMUSG00000114240 ENSMUST00000224237 Gm47360 lincRNA Interval_127046 chr5 99926223 99926795 + 0 NA intron (ENSMUSG00000105078.2, intron 4 of 5) protein_coding-intron (ENSMUSG00000105078.2, intron 4 of 5) 1872 ENSMUSG00000089062.1 ENSMUSG00000089062 ENSMUST00000158437 Gm22838 snRNA Interval_34153 chr11 120938843 120939723 + 0 NA Intergenic Intergenic -9798 ENSMUSG00000025161.16 ENSMUSG00000025161 ENSMUST00000134540 Slc16a3 protein_coding Interval_36548 chr12 49361804 49362057 + 0 NA Intergenic Intergenic 19955 ENSMUSG00000112763.1 ENSMUSG00000112763 ENSMUST00000218927 Gm34304 lincRNA Interval_37811 chr12 72147819 72148251 + 0 NA intron (ENSMUSG00000021086.5, intron 7 of 20) protein_coding-intron (ENSMUSG00000021086.5, intron 7 of 20) -17717 ENSMUSG00000095382.1 ENSMUSG00000095382 ENSMUST00000179978 Gm24466 miRNA Interval_10865 chr1 176274431 176275870 + 0 NA exon (ENSMUSG00000055214.15, exon 1 of 10) protein_coding-exon (ENSMUSG00000055214.15, exon 1 of 10) -1063 ENSMUSG00000104157.1 ENSMUSG00000104157 ENSMUST00000193484 Gm38101 lincRNA Interval_163241 chr9 19148656 19148940 + 0 NA Intergenic Intergenic 5762 ENSMUSG00000110645.1 ENSMUSG00000110645 ENSMUST00000211872 Olfr838-ps1 unprocessed_pseudogene Interval_57699 chr15 15937858 15938235 + 0 NA Intergenic Intergenic -5385 ENSMUSG00000115633.1 ENSMUSG00000115633 ENSMUST00000226265 Gm29753 processed_pseudogene Interval_105649 chr3 88365853 88367454 + 0 NA promoter-TSS (ENSMUSG00000041423.16) protein_coding-promoter-TSS (ENSMUSG00000041423.16) 2062 ENSMUSG00000041423.16 ENSMUSG00000041423 ENSMUST00000147818 Paqr6 protein_coding Interval_81609 chr18 62062250 62063063 + 0 NA Intergenic Intergenic -79962 ENSMUSG00000118370.1 ENSMUSG00000118370 ENSMUST00000236502 Gm41750 lincRNA Interval_9651 chr1 160740854 160741071 + 0 NA intron (ENSMUSG00000026721.16, intron 1 of 3) protein_coding-intron (ENSMUSG00000026721.16, intron 1 of 20) -12802 ENSMUSG00000103632.1 ENSMUSG00000103632 ENSMUST00000193473 Gm38329 TEC Interval_25885 chr11 52333206 52333549 + 0 NA Intergenic Intergenic -40723 ENSMUSG00000020402.11 ENSMUSG00000020402 ENSMUST00000153339 Vdac1 protein_coding Interval_171208 chr9 115224959 115225313 + 0 NA intron (ENSMUSG00000040875.12, intron 9 of 11) protein_coding-intron (ENSMUSG00000040875.12, intron 7 of 9) 24738 ENSMUSG00000097967.1 ENSMUSG00000097967 ENSMUST00000182789 Gm27002 sense_intronic Interval_52519 chr14 47276167 47277470 + 0 NA promoter-TSS (ENSMUSG00000048379.9) protein_coding-promoter-TSS (ENSMUSG00000048379.9) -347 ENSMUSG00000048379.9 ENSMUSG00000048379 ENSMUST00000227413 Socs4 protein_coding Interval_68749 chr16 85470959 85471180 + 0 NA intron (ENSMUSG00000041134.15, intron 2 of 3) protein_coding-intron (ENSMUSG00000041134.15, intron 2 of 3) 79348 ENSMUSG00000041134.15 ENSMUSG00000041134 ENSMUST00000162621 Cyyr1 protein_coding Interval_117311 chr4 122910179 122910991 + 0 NA Intergenic Intergenic -15248 ENSMUSG00000080929.1 ENSMUSG00000080929 ENSMUST00000119358 Gm12891 processed_pseudogene Interval_150455 chr7 110767721 110769568 + 0 NA intron (ENSMUSG00000005686.17, intron 1 of 2) protein_coding-intron (ENSMUSG00000005686.17, intron 1 of 2) -267 ENSMUSG00000005686.17 ENSMUSG00000005686 ENSMUST00000148292 Ampd3 protein_coding Interval_27420 chr11 67517391 67517750 + 0 NA intron (ENSMUSG00000033066.16, intron 1 of 6) protein_coding-intron (ENSMUSG00000033066.16, intron 1 of 13) 59896 ENSMUSG00000087058.1 ENSMUSG00000087058 ENSMUST00000152963 Gm12301 antisense Interval_73159 chr17 35164291 35165565 + 0 NA promoter-TSS (ENSMUSG00000024393.14) protein_coding-promoter-TSS (ENSMUSG00000024393.14) -191 ENSMUSG00000090936.2 ENSMUSG00000090936 ENSMUST00000172285 Gm17705 lincRNA Interval_95946 chr2 118605808 118607229 + 0 NA intron (ENSMUSG00000040084.9, intron 2 of 3) protein_coding-intron (ENSMUSG00000040084.9, intron 3 of 22) 12439 ENSMUSG00000080747.1 ENSMUSG00000080747 ENSMUST00000119095 Gm14016 processed_pseudogene Interval_151389 chr7 122018127 122019150 + 0 NA intron (ENSMUSG00000030872.14, intron 1 of 4) protein_coding-intron (ENSMUSG00000030872.14, intron 1 of 16) 2542 ENSMUSG00000030872.14 ENSMUSG00000030872 ENSMUST00000131081 Gga2 protein_coding Interval_18087 chr10 82251869 82252041 + 0 NA Intergenic Intergenic -10675 ENSMUSG00000062931.15 ENSMUSG00000062931 ENSMUST00000156218 Zfp938 protein_coding Interval_75153 chr17 64074880 64075077 + 0 NA intron (ENSMUSG00000000127.15, intron 14 of 17) protein_coding-intron (ENSMUSG00000000127.15, intron 14 of 17) -211187 ENSMUSG00000045506.3 ENSMUSG00000045506 ENSMUST00000050753 A930002H24Rik protein_coding Interval_171503 chr9 118887221 118888130 + 0 NA intron (ENSMUSG00000039115.13, intron 2 of 3) protein_coding-intron (ENSMUSG00000039115.13, intron 26 of 27) 15606 ENSMUSG00000039115.13 ENSMUSG00000039115 ENSMUST00000155437 Itga9 protein_coding Interval_1049 chr1 14469281 14469813 + 0 NA Intergenic Intergenic -164977 ENSMUSG00000025932.14 ENSMUSG00000025932 ENSMUST00000185329 Eya1 protein_coding Interval_25592 chr11 50006133 50006353 + 0 NA Intergenic Intergenic -19104 ENSMUSG00000020376.17 ENSMUSG00000020376 ENSMUST00000143607 Rnf130 protein_coding Interval_19435 chr10 99228465 99229557 + 0 NA promoter-TSS (ENSMUSG00000112805.1) lincRNA-promoter-TSS (ENSMUSG00000112805.1) -105 ENSMUSG00000112805.1 ENSMUSG00000112805 ENSMUST00000219433 Gm34574 lincRNA Interval_3373 chr1 57527479 57527805 + 0 NA Intergenic Intergenic -4000 ENSMUSG00000102685.1 ENSMUSG00000102685 ENSMUST00000194005 Gm37373 TEC Interval_18339 chr10 85034761 85035657 + 0 NA Intergenic Intergenic 67286 ENSMUSG00000050035.7 ENSMUSG00000050035 ENSMUST00000216889 Fhl4 protein_coding Interval_1810 chr1 33931556 33932145 + 0 NA intron (ENSMUSG00000026131.20, intron 2 of 102) protein_coding-intron (ENSMUSG00000026131.20, intron 2 of 102) 9395 ENSMUSG00000103596.1 ENSMUSG00000103596 ENSMUST00000193333 Gm37354 TEC Interval_174011 chrX 129613125 129613351 + 0 NA Intergenic Intergenic -6782 ENSMUSG00000081874.1 ENSMUSG00000081874 ENSMUST00000121551 Gm14983 processed_pseudogene Interval_89938 chr2 26603362 26604901 + 0 NA promoter-TSS (ENSMUSG00000026922.13) protein_coding-promoter-TSS (ENSMUSG00000026922.13) -205 ENSMUSG00000026922.13 ENSMUSG00000026922 ENSMUST00000154753 Agpat2 protein_coding Interval_59651 chr15 57574247 57574680 + 0 NA Intergenic Intergenic -85592 ENSMUSG00000115629.1 ENSMUSG00000115629 ENSMUST00000227877 Gm49235 processed_pseudogene Interval_83236 chr18 82917638 82918055 + 0 NA promoter-TSS (ENSMUSG00000058881.13) protein_coding-promoter-TSS (ENSMUSG00000058881.13) 92 ENSMUSG00000058881.13 ENSMUSG00000058881 ENSMUST00000236468 Zfp516 protein_coding Interval_90707 chr2 32027918 32028245 + 0 NA intron (ENSMUSG00000001855.15, intron 2 of 3) protein_coding-intron (ENSMUSG00000001855.15, intron 26 of 35) -10737 ENSMUSG00000086192.1 ENSMUSG00000086192 ENSMUST00000141023 Gm13609 antisense Interval_123688 chr5 34513239 34514433 + 0 NA promoter-TSS (ENSMUSG00000059866.13) protein_coding-promoter-TSS (ENSMUSG00000059866.13) -176 ENSMUSG00000059866.13 ENSMUSG00000059866 ENSMUST00000159102 Tnip2 protein_coding Interval_71853 chr17 26537577 26538555 + 0 NA intron (ENSMUSG00000118068.1, intron 1 of 2) protein_coding-intron (ENSMUSG00000024190.7, intron 3 of 5) 161 ENSMUSG00000118068.1 ENSMUSG00000118068 ENSMUST00000237899 Gm50275 sense_intronic Interval_99055 chr2 156894790 156895425 + 0 NA intron (ENSMUSG00000080880.1, intron 8 of 11) unprocessed_pseudogene-intron (ENSMUSG00000080880.1, intron 8 of 11) -1989 ENSMUSG00000081616.1 ENSMUSG00000081616 ENSMUST00000120950 Gm14247 processed_pseudogene Interval_153042 chr7 141030520 141031063 + 0 NA Intergenic Intergenic 1660 ENSMUSG00000091441.1 ENSMUSG00000091441 ENSMUST00000170892 Gm17387 protein_coding Interval_93388 chr2 72649447 72649652 + 0 NA Intergenic Intergenic 15613 ENSMUSG00000081957.5 ENSMUSG00000081957 ENSMUST00000120282 Ak3l2-ps processed_pseudogene Interval_174504 chrX 153719329 153720212 + 0 NA Intergenic Intergenic -3823 ENSMUSG00000086316.8 ENSMUSG00000086316 ENSMUST00000208235 Nbdy protein_coding Interval_66198 chr16 32280266 32280472 + 0 NA intron (ENSMUSG00000014074.17, intron 1 of 5) protein_coding-intron (ENSMUSG00000014074.17, intron 1 of 5) 2908 ENSMUSG00000014074.17 ENSMUSG00000014074 ENSMUST00000171474 Rnf168 protein_coding Interval_105102 chr3 81216766 81217001 + 0 NA Intergenic Intergenic -176446 ENSMUSG00000085106.1 ENSMUSG00000085106 ENSMUST00000146657 Gm16000 antisense Interval_104493 chr3 66747033 66747200 + 0 NA Intergenic Intergenic -135234 ENSMUSG00000103700.1 ENSMUSG00000103700 ENSMUST00000195167 Gm6555 processed_pseudogene Interval_59948 chr15 62148978 62149992 + 0 NA intron (ENSMUSG00000097039.8, intron 3 of 9) lincRNA-intron (ENSMUSG00000097039.8, intron 3 of 8) -25937 ENSMUSG00000098595.1 ENSMUSG00000098595 ENSMUST00000184054 Gm27957 misc_RNA Interval_130686 chr5 129754200 129754528 + 0 NA intron (ENSMUSG00000029432.12, intron 8 of 10) protein_coding-intron (ENSMUSG00000029432.12, intron 8 of 9) 26192 ENSMUSG00000086916.2 ENSMUSG00000086916 ENSMUST00000199631 Gm15903 sense_intronic Interval_174437 chrX 152279320 152279633 + 0 NA Intergenic Intergenic 9670 ENSMUSG00000025332.14 ENSMUSG00000025332 ENSMUST00000155793 Kdm5c protein_coding Interval_47948 chr13 94562403 94562870 + 0 NA intron (ENSMUSG00000021686.6, intron 11 of 11) protein_coding-intron (ENSMUSG00000021686.6, intron 26 of 26) 45474 ENSMUSG00000084423.1 ENSMUSG00000084423 ENSMUST00000122474 Gm25109 miRNA Interval_162965 chr9 13802725 13803486 + 0 NA intron (ENSMUSG00000031918.16, intron 13 of 15) protein_coding-intron (ENSMUSG00000031918.16, intron 12 of 14) 15804 ENSMUSG00000031922.12 ENSMUSG00000031922 ENSMUST00000124524 Cep57 protein_coding Interval_122806 chr5 25666741 25667273 + 0 NA Intergenic Intergenic -6852 ENSMUSG00000059244.6 ENSMUSG00000059244 ENSMUST00000072180 Gm10062 lincRNA Interval_35487 chr12 23001226 23002833 + 0 NA intron (ENSMUSG00000073164.11, intron 1 of 4) lincRNA-intron (ENSMUSG00000073164.11, intron 1 of 2) 3674 ENSMUSG00000113289.1 ENSMUSG00000113289 ENSMUST00000221861 Gm48044 processed_pseudogene Interval_128021 chr5 110332803 110333041 + 0 NA promoter-TSS (ENSMUSG00000007080.14) protein_coding-promoter-TSS (ENSMUSG00000007080.14) 281 ENSMUSG00000085606.1 ENSMUSG00000085606 ENSMUST00000137099 Gm15792 antisense Interval_88979 chr2 13941281 13941505 + 0 NA intron (ENSMUSG00000063275.15, intron 7 of 7) protein_coding-intron (ENSMUSG00000063275.15, intron 7 of 7) 78656 ENSMUSG00000102553.1 ENSMUSG00000102553 ENSMUST00000191894 D930036K23Rik TEC Interval_68613 chr16 81330500 81330738 + 0 NA intron (ENSMUSG00000022762.18, intron 1 of 8) protein_coding-intron (ENSMUSG00000022762.18, intron 1 of 15) 40457 ENSMUSG00000116735.1 ENSMUSG00000116735 ENSMUST00000231935 Gm49555 TEC Interval_47896 chr13 94241683 94242717 + 0 NA intron (ENSMUSG00000021687.14, intron 2 of 8) protein_coding-intron (ENSMUSG00000021687.14, intron 2 of 8) 4358 ENSMUSG00000021687.14 ENSMUSG00000021687 ENSMUST00000138255 Scamp1 protein_coding Interval_75979 chr17 74084404 74086126 + 0 NA Intergenic Intergenic -6219 ENSMUSG00000117038.1 ENSMUSG00000117038 ENSMUST00000232749 Gm49880 processed_transcript Interval_5688 chr1 90927535 90928930 + 0 NA intron (ENSMUSG00000026303.6, intron 1 of 1) protein_coding-intron (ENSMUSG00000026303.6, intron 3 of 15) -10937 ENSMUSG00000026303.6 ENSMUSG00000026303 ENSMUST00000136220 Mlph protein_coding Interval_32376 chr11 107219965 107220600 + 0 NA intron (ENSMUSG00000040430.18, intron 8 of 9) protein_coding-intron (ENSMUSG00000040430.18, intron 7 of 7) 29188 ENSMUSG00000081360.1 ENSMUSG00000081360 ENSMUST00000119942 Gm11718 processed_pseudogene Interval_154089 chr8 12597026 12597232 + 0 NA intron (ENSMUSG00000010435.7, intron 6 of 7) protein_coding-intron (ENSMUSG00000010435.7, intron 5 of 6) -23809 ENSMUSG00000097421.2 ENSMUSG00000097421 ENSMUST00000180858 D630011A20Rik bidirectional_promoter_lncRNA Interval_154880 chr8 24594818 24596162 + 0 NA exon (ENSMUSG00000031551.12, exon 1 of 10) protein_coding-exon (ENSMUSG00000031551.12, exon 1 of 10) 176 ENSMUSG00000031551.12 ENSMUSG00000031551 ENSMUST00000033956 Ido1 protein_coding Interval_168350 chr9 79290024 79290324 + 0 NA Intergenic Intergenic -22523 ENSMUSG00000111638.1 ENSMUSG00000111638 ENSMUST00000215508 Gm47501 lincRNA Interval_153659 chr8 4347577 4348404 + 0 NA exon (ENSMUSG00000023235.14, exon 3 of 4) protein_coding-exon (ENSMUSG00000023235.14, exon 3 of 4) 14664 ENSMUSG00000108818.1 ENSMUSG00000108818 ENSMUST00000208836 Gm44869 processed_pseudogene Interval_90752 chr2 32299349 32299561 + 0 NA TTS (ENSMUSG00000002546.17) protein_coding-TTS (ENSMUSG00000002546.17) 11202 ENSMUSG00000002546.17 ENSMUSG00000002546 ENSMUST00000146544 Golga2 protein_coding Interval_56311 chr14 117037226 117037727 + 0 NA intron (ENSMUSG00000058571.11, intron 1 of 9) protein_coding-intron (ENSMUSG00000058571.11, intron 1 of 8) 111945 ENSMUSG00000058571.11 ENSMUSG00000058571 ENSMUST00000078849 Gpc6 protein_coding Interval_17916 chr10 80808712 80809051 + 0 NA exon (ENSMUSG00000020216.13, exon 5 of 5) protein_coding-exon (ENSMUSG00000020216.13, exon 5 of 5) 3638 ENSMUSG00000035262.5 ENSMUSG00000035262 ENSMUST00000036016 Amh protein_coding Interval_68601 chr16 80612622 80613018 + 0 NA Intergenic Intergenic -72405 ENSMUSG00000089138.1 ENSMUSG00000089138 ENSMUST00000158513 Gm24773 snRNA Interval_133887 chr6 14284987 14285249 + 0 NA Intergenic Intergenic 104933 ENSMUSG00000107403.1 ENSMUSG00000107403 ENSMUST00000204077 Gm8820 processed_pseudogene Interval_40930 chr12 109977724 109978025 + 0 NA Intergenic Intergenic 45999 ENSMUSG00000113063.1 ENSMUSG00000113063 ENSMUST00000222974 Gm34667 lincRNA Interval_64762 chr16 15546677 15547185 + 0 NA Intergenic Intergenic -40434 ENSMUSG00000116386.1 ENSMUSG00000116386 ENSMUST00000229197 Gm49538 processed_pseudogene Interval_92003 chr2 52442297 52442597 + 0 NA intron (ENSMUSG00000017412.15, intron 12 of 13) protein_coding-intron (ENSMUSG00000017412.15, intron 12 of 13) 17435 ENSMUSG00000085315.7 ENSMUSG00000085315 ENSMUST00000143821 A430018G15Rik processed_transcript Interval_104279 chr3 62534835 62535102 + 0 NA intron (ENSMUSG00000043441.5, intron 3 of 3) protein_coding-intron (ENSMUSG00000043441.5, intron 3 of 3) -32835 ENSMUSG00000027770.5 ENSMUSG00000027770 ENSMUST00000192223 Dhx36 protein_coding Interval_150147 chr7 107389665 107389862 + 0 NA intron (ENSMUSG00000062542.11, intron 1 of 1) protein_coding-intron (ENSMUSG00000062542.11, intron 1 of 6) 23691 ENSMUSG00000109078.1 ENSMUSG00000109078 ENSMUST00000208516 Gm19033 processed_pseudogene Interval_101113 chr2 178071661 178072545 + 0 NA intron (ENSMUSG00000078861.8, intron 1 of 2) protein_coding-intron (ENSMUSG00000078861.8, intron 1 of 2) 6322 ENSMUSG00000078861.8 ENSMUSG00000078861 ENSMUST00000108923 Zfp931 protein_coding Interval_41085 chr12 111080478 111080740 + 0 NA intron (ENSMUSG00000037896.17, intron 2 of 11) protein_coding-intron (ENSMUSG00000037896.17, intron 2 of 11) -10591 ENSMUSG00000113200.1 ENSMUSG00000113200 ENSMUST00000221105 Gm48632 TEC Interval_135865 chr6 48047211 48049206 + 0 NA promoter-TSS (ENSMUSG00000071477.10) protein_coding-promoter-TSS (ENSMUSG00000071477.10) -495 ENSMUSG00000092928.1 ENSMUSG00000092928 ENSMUST00000175187 Gm24563 miRNA Interval_122741 chr5 25005663 25006018 + 0 NA intron (ENSMUSG00000028944.14, intron 3 of 15) protein_coding-intron (ENSMUSG00000028944.14, intron 3 of 15) 19998 ENSMUSG00000059631.6 ENSMUSG00000059631 ENSMUST00000075081 1500035N22Rik lincRNA Interval_117913 chr4 127015373 127016040 + 0 NA Intergenic Intergenic -7821 ENSMUSG00000028820.13 ENSMUSG00000028820 ENSMUST00000125453 Sfpq protein_coding Interval_51905 chr14 33695324 33695900 + 0 NA Intergenic Intergenic 51117 ENSMUSG00000064446.1 ENSMUSG00000064446 ENSMUST00000082512 Gm26228 snRNA Interval_4627 chr1 75518078 75518672 + 0 NA Intergenic Intergenic -4092 ENSMUSG00000082745.1 ENSMUSG00000082745 ENSMUST00000120142 Gm15181 unprocessed_pseudogene Interval_2846 chr1 46383144 46383388 + 0 NA Intergenic Intergenic 9069 ENSMUSG00000096047.1 ENSMUSG00000096047 ENSMUST00000093689 n-R5s211 rRNA Interval_59865 chr15 60238736 60239154 + 0 NA Intergenic Intergenic -51834 ENSMUSG00000115681.1 ENSMUSG00000115681 ENSMUST00000226736 Gm2682 lincRNA Interval_122532 chr5 23625073 23625490 + 0 NA intron (ENSMUSG00000062604.11, intron 2 of 8) protein_coding-intron (ENSMUSG00000062604.11, intron 2 of 8) 49100 ENSMUSG00000088359.1 ENSMUSG00000088359 ENSMUST00000157734 Gm24009 rRNA Interval_10958 chr1 177583427 177584221 + 0 NA Intergenic Intergenic 10698 ENSMUSG00000102885.1 ENSMUSG00000102885 ENSMUST00000194583 Gm37280 lincRNA Interval_19686 chr10 108031811 108032073 + 0 NA Intergenic Intergenic 85297 ENSMUSG00000112910.1 ENSMUSG00000112910 ENSMUST00000219670 Gm29685 lincRNA Interval_13998 chr10 25379854 25380329 + 0 NA intron (ENSMUSG00000019978.16, intron 1 of 17) protein_coding-intron (ENSMUSG00000019978.16, intron 1 of 19) 36094 ENSMUSG00000112445.1 ENSMUSG00000112445 ENSMUST00000219193 Gm47830 processed_pseudogene Interval_14926 chr10 41208879 41210186 + 0 NA intron (ENSMUSG00000038417.4, intron 22 of 22) protein_coding-intron (ENSMUSG00000038417.4, intron 22 of 22) -6513 ENSMUSG00000093933.1 ENSMUSG00000093933 ENSMUST00000104332 Gm25526 snoRNA Interval_92020 chr2 52626128 52626860 + 0 NA intron (ENSMUSG00000017412.15, intron 2 of 13) protein_coding-intron (ENSMUSG00000017412.15, intron 2 of 13) 6740 ENSMUSG00000025201.7 ENSMUSG00000025201 ENSMUST00000183232 Bloc1s2-ps processed_pseudogene Interval_64504 chr16 12807214 12807759 + 0 NA intron (ENSMUSG00000101565.2, intron 2 of 2) lincRNA-intron (ENSMUSG00000116520.1, intron 2 of 11) 6907 ENSMUSG00000101565.2 ENSMUSG00000101565 ENSMUST00000190074 1700003L19Rik lincRNA Interval_155954 chr8 41251841 41252214 + 0 NA intron (ENSMUSG00000031592.10, intron 1 of 38) protein_coding-intron (ENSMUSG00000031592.10, intron 1 of 37) 12249 ENSMUSG00000031592.10 ENSMUSG00000031592 ENSMUST00000211247 Pcm1 protein_coding Interval_7331 chr1 129148865 129149241 + 0 NA Intergenic Intergenic -134054 ENSMUSG00000103742.1 ENSMUSG00000103742 ENSMUST00000195110 Gm38240 TEC Interval_158684 chr8 85171250 85171920 + 0 NA exon (ENSMUSG00000062687.6, exon 1 of 1) protein_coding-exon (ENSMUSG00000062687.6, exon 1 of 1) 19661 ENSMUSG00000062687.6 ENSMUSG00000062687 ENSMUST00000076896 Cks1brt protein_coding Interval_72085 chr17 27939948 27942272 + 0 NA intron (ENSMUSG00000024219.16, intron 1 of 23) protein_coding-intron (ENSMUSG00000024219.16, intron 1 of 24) 24206 ENSMUSG00000085846.1 ENSMUSG00000085846 ENSMUST00000145924 Gm15597 antisense Interval_59130 chr15 44438650 44439723 + 0 NA TTS (ENSMUSG00000022338.8) protein_coding-TTS (ENSMUSG00000022338.8) 6591 ENSMUSG00000094551.1 ENSMUSG00000094551 ENSMUST00000177971 Gm22392 snRNA Interval_7537 chr1 132089931 132090639 + 0 NA Intergenic Intergenic -10354 ENSMUSG00000088779.1 ENSMUSG00000088779 ENSMUST00000158154 Gm26034 snRNA Interval_40490 chr12 105174094 105174919 + 0 NA Intergenic Intergenic -1838 ENSMUSG00000000701.8 ENSMUSG00000000701 ENSMUST00000000717 Tcl1b5 protein_coding Interval_5386 chr1 88357187 88358324 + 0 NA intron (ENSMUSG00000036251.16, intron 16 of 24) protein_coding-intron (ENSMUSG00000036251.16, intron 17 of 25) -4825 ENSMUSG00000085420.1 ENSMUSG00000085420 ENSMUST00000147594 4930453O03Rik antisense Interval_148387 chr7 80962587 80963986 + 0 NA Intergenic Intergenic -16607 ENSMUSG00000109367.1 ENSMUSG00000109367 ENSMUST00000209023 Gm18782 processed_pseudogene Interval_74485 chr17 51763889 51764407 + 0 NA intron (ENSMUSG00000023927.15, intron 8 of 9) protein_coding-intron (ENSMUSG00000023927.15, intron 9 of 10) -2527 ENSMUSG00000102212.1 ENSMUSG00000102212 ENSMUST00000194893 C230085N15Rik TEC Interval_7710 chr1 133203318 133204708 + 0 NA intron (ENSMUSG00000041757.17, intron 1 of 22) protein_coding-intron (ENSMUSG00000041757.17, intron 1 of 22) -52529 ENSMUSG00000041757.17 ENSMUSG00000041757 ENSMUST00000190208 Plekha6 protein_coding Interval_57236 chr15 8046770 8047476 + 0 NA intron (ENSMUSG00000039828.7, intron 5 of 17) protein_coding-intron (ENSMUSG00000039828.7, intron 5 of 17) 52086 ENSMUSG00000039828.7 ENSMUSG00000039828 ENSMUST00000227371 Wdr70 protein_coding Interval_18661 chr10 88881313 88882151 + 0 NA Intergenic Intergenic -4260 ENSMUSG00000020062.7 ENSMUSG00000020062 ENSMUST00000020255 Slc5a8 protein_coding Interval_113224 chr4 50524591 50524840 + 0 NA Intergenic Intergenic 237969 ENSMUSG00000095394.1 ENSMUSG00000095394 ENSMUST00000104120 Gm25485 snoRNA Interval_160933 chr8 115276920 115277145 + 0 NA intron (ENSMUSG00000004637.15, intron 2 of 2) protein_coding-intron (ENSMUSG00000004637.15, intron 8 of 8) -224119 ENSMUSG00000088428.1 ENSMUSG00000088428 ENSMUST00000157803 Gm22556 rRNA Interval_88706 chr2 9896035 9898025 + 0 NA Intergenic Intergenic -7490 ENSMUSG00000079602.2 ENSMUSG00000079602 ENSMUST00000114915 9230102O04Rik protein_coding Interval_162436 chr8 128708846 128709725 + 0 NA intron (ENSMUSG00000025809.15, intron 3 of 14) protein_coding-intron (ENSMUSG00000025809.15, intron 3 of 15) -15048 ENSMUSG00000025809.15 ENSMUSG00000025809 ENSMUST00000149116 Itgb1 protein_coding Interval_19583 chr10 103867209 103867809 + 0 NA Intergenic Intergenic -9177 ENSMUSG00000112554.1 ENSMUSG00000112554 ENSMUST00000218181 Gm47224 lincRNA Interval_44884 chr13 49356307 49356633 + 0 NA intron (ENSMUSG00000037933.16, intron 1 of 7) protein_coding-intron (ENSMUSG00000037933.16, intron 1 of 6) -26619 ENSMUSG00000037933.16 ENSMUSG00000037933 ENSMUST00000220723 Bicd2 protein_coding Interval_161255 chr8 119295336 119295832 + 0 NA intron (ENSMUSG00000031841.19, intron 2 of 3) protein_coding-intron (ENSMUSG00000031841.19, intron 11 of 13) -48932 ENSMUSG00000031839.7 ENSMUSG00000031839 ENSMUST00000212795 Hsbp1 protein_coding Interval_33579 chr11 117331641 117333172 + 0 NA promoter-TSS (ENSMUSG00000059248.13) protein_coding-promoter-TSS (ENSMUSG00000059248.13) -22 ENSMUSG00000059248.13 ENSMUSG00000059248 ENSMUST00000129387 Septin9 protein_coding Interval_122569 chr5 23843785 23844612 + 0 NA promoter-TSS (ENSMUSG00000028998.6) protein_coding-promoter-TSS (ENSMUSG00000028998.6) -37 ENSMUSG00000028998.6 ENSMUSG00000028998 ENSMUST00000030851 Tomm7 protein_coding Interval_80533 chr18 43464677 43466047 + 0 NA Intergenic Intergenic -7454 ENSMUSG00000097891.1 ENSMUSG00000097891 ENSMUST00000180600 Gm3650 unprocessed_pseudogene Interval_127691 chr5 106695628 106697151 + 0 NA promoter-TSS (ENSMUSG00000049606.16) protein_coding-promoter-TSS (ENSMUSG00000049606.16) 182 ENSMUSG00000098302.1 ENSMUSG00000098302 ENSMUST00000149128 Gm28039 processed_transcript Interval_163933 chr9 29222989 29223533 + 0 NA intron (ENSMUSG00000059974.10, intron 2 of 2) protein_coding-intron (ENSMUSG00000059974.10, intron 2 of 7) 163462 ENSMUSG00000085449.1 ENSMUSG00000085449 ENSMUST00000132097 Gm15520 antisense Interval_34408 chr12 3905482 3906810 + 0 NA promoter-TSS (ENSMUSG00000020661.15) protein_coding-promoter-TSS (ENSMUSG00000020661.15) 25894 ENSMUSG00000112271.1 ENSMUSG00000112271 ENSMUST00000220237 Gm9088 processed_pseudogene Interval_165489 chr9 48638511 48638946 + 0 NA Intergenic Intergenic -41353 ENSMUSG00000032271.13 ENSMUSG00000032271 ENSMUST00000128076 Nnmt protein_coding Interval_123952 chr5 36835862 36836382 + 0 NA Intergenic Intergenic -23159 ENSMUSG00000029119.9 ENSMUSG00000029119 ENSMUST00000124711 Man2b2 protein_coding Interval_166519 chr9 60364236 60365303 + 0 NA intron (ENSMUSG00000032289.15, intron 5 of 16) protein_coding-intron (ENSMUSG00000032289.15, intron 6 of 17) 28988 ENSMUSG00000111065.1 ENSMUSG00000111065 ENSMUST00000216899 Gm47676 TEC Interval_50625 chr14 16790194 16790866 + 0 NA intron (ENSMUSG00000017491.9, intron 1 of 3) protein_coding-intron (ENSMUSG00000017491.9, intron 1 of 3) -156129 ENSMUSG00000114890.1 ENSMUSG00000114890 ENSMUST00000223705 Tpi-rs9 processed_pseudogene Interval_25189 chr11 45003945 45004218 + 0 NA intron (ENSMUSG00000057098.14, intron 15 of 15) protein_coding-intron (ENSMUSG00000057098.14, intron 15 of 15) 112847 ENSMUSG00000084773.1 ENSMUSG00000084773 ENSMUST00000143869 Gm12159 lincRNA Interval_46088 chr13 61478129 61478540 + 0 NA Intergenic Intergenic 11995 ENSMUSG00000114667.1 ENSMUSG00000114667 ENSMUST00000225450 Ctsm-ps2 unprocessed_pseudogene Interval_36140 chr12 36284796 36285657 + 0 NA intron (ENSMUSG00000113832.1, intron 3 of 3) lincRNA-intron (ENSMUSG00000113832.1, intron 3 of 3) 20301 ENSMUSG00000113832.1 ENSMUSG00000113832 ENSMUST00000220656 Gm40392 lincRNA Interval_71751 chr17 25860966 25861960 + 0 NA promoter-TSS (ENSMUSG00000073434.12) protein_coding-promoter-TSS (ENSMUSG00000073434.12) 6373 ENSMUSG00000025732.6 ENSMUSG00000025732 ENSMUST00000235578 Mcrip2 protein_coding Interval_132417 chr5 144806942 144807760 + 0 NA exon (ENSMUSG00000045482.16, exon 30 of 70) protein_coding-exon (ENSMUSG00000045482.16, exon 30 of 70) 32926 ENSMUSG00000088685.1 ENSMUSG00000088685 ENSMUST00000158060 Gm23995 snoRNA Interval_121170 chr4 153761124 153761365 + 0 NA Intergenic Intergenic -115140 ENSMUSG00000077519.1 ENSMUSG00000077519 ENSMUST00000104331 Gm25880 snoRNA Interval_4511 chr1 74723728 74724548 + 0 NA intron (ENSMUSG00000026170.6, intron 1 of 8) protein_coding-intron (ENSMUSG00000026170.6, intron 1 of 8) -11213 ENSMUSG00000026170.6 ENSMUSG00000026170 ENSMUST00000189083 Cyp27a1 protein_coding Interval_78424 chr18 12731285 12733480 + 0 NA intron (ENSMUSG00000024424.15, intron 10 of 13) protein_coding-intron (ENSMUSG00000024424.15, intron 10 of 13) -8929 ENSMUSG00000024430.14 ENSMUSG00000024430 ENSMUST00000191078 Cabyr protein_coding Interval_71026 chr17 17257159 17258276 + 0 NA intron (ENSMUSG00000116802.1, intron 1 of 3) lincRNA-intron (ENSMUSG00000116802.1, intron 1 of 3) -4633 ENSMUSG00000116802.1 ENSMUSG00000116802 ENSMUST00000231376 Gm5165 lincRNA Interval_140246 chr6 115770157 115770558 + 0 NA promoter-TSS (ENSMUSG00000108204.1) processed_pseudogene-promoter-TSS (ENSMUSG00000108204.1) -30 ENSMUSG00000108204.1 ENSMUSG00000108204 ENSMUST00000203671 Gm44180 processed_pseudogene Interval_46284 chr13 63363366 63364122 + 0 NA intron (ENSMUSG00000021461.17, intron 1 of 2) protein_coding-intron (ENSMUSG00000021461.17, intron 4 of 15) 17301 ENSMUSG00000090232.1 ENSMUSG00000090232 ENSMUST00000159296 Gm16132 sense_intronic Interval_3101 chr1 53331721 53332144 + 0 NA intron (ENSMUSG00000101838.6, intron 2 of 5) protein_coding-intron (ENSMUSG00000099913.1, intron 5 of 6) 1411 ENSMUSG00000101838.6 ENSMUSG00000101838 ENSMUST00000186588 Gm18800 transcribed_unprocessed_pseudogene Interval_110198 chr3 154191950 154193418 + 0 NA intron (ENSMUSG00000028360.10, intron 2 of 21) protein_coding-intron (ENSMUSG00000028360.10, intron 2 of 21) 53587 ENSMUSG00000104622.1 ENSMUSG00000104622 ENSMUST00000199871 Gm42541 TEC Interval_113670 chr4 57433650 57435089 + 0 NA exon (ENSMUSG00000090053.9, exon 1 of 7) protein_coding-exon (ENSMUSG00000090053.9, exon 1 of 7) -20173 ENSMUSG00000081540.3 ENSMUSG00000081540 ENSMUST00000120064 Gm12538 processed_pseudogene Interval_42096 chr13 8731392 8731738 + 0 NA intron (ENSMUSG00000052551.16, intron 7 of 10) protein_coding-intron (ENSMUSG00000052551.16, intron 7 of 9) 66837 ENSMUSG00000113391.1 ENSMUSG00000113391 ENSMUST00000221553 Gm48327 TEC Interval_110889 chr4 9595759 9596401 + 0 NA promoter-TSS (ENSMUSG00000028207.18) protein_coding-promoter-TSS (ENSMUSG00000028207.18) 47637 ENSMUSG00000028207.18 ENSMUSG00000028207 ENSMUST00000130617 Asph protein_coding Interval_99218 chr2 158168839 158169227 + 0 NA Intergenic Intergenic -22640 ENSMUSG00000037820.15 ENSMUSG00000037820 ENSMUST00000152690 Tgm2 protein_coding Interval_111383 chr4 20077370 20077843 + 0 NA Intergenic Intergenic 35554 ENSMUSG00000073987.4 ENSMUSG00000073987 ENSMUST00000098242 Ggh protein_coding Interval_14455 chr10 33979465 33979819 + 0 NA TTS (ENSMUSG00000112801.1) processed_pseudogene-TTS (ENSMUSG00000112801.1) 1198 ENSMUSG00000112801.1 ENSMUSG00000112801 ENSMUST00000217878 Gm48034 processed_pseudogene Interval_32797 chr11 110768069 110768909 + 0 NA Intergenic Intergenic -199544 ENSMUSG00000051497.15 ENSMUSG00000051497 ENSMUST00000178798 Kcnj16 protein_coding Interval_156125 chr8 44978623 44980491 + 0 NA intron (ENSMUSG00000070047.14, intron 1 of 28) protein_coding-intron (ENSMUSG00000070047.14, intron 1 of 25) 29343 ENSMUSG00000070047.14 ENSMUSG00000070047 ENSMUST00000189367 Fat1 protein_coding Interval_108301 chr3 123446575 123448297 + 0 NA promoter-TSS (ENSMUSG00000105784.1) antisense-promoter-TSS (ENSMUSG00000105784.1) 11 ENSMUSG00000105784.1 ENSMUSG00000105784 ENSMUST00000199206 Gm35065 antisense Interval_111287 chr4 17208497 17210355 + 0 NA Intergenic Intergenic 46935 ENSMUSG00000083572.1 ENSMUSG00000083572 ENSMUST00000121293 Gm11849 processed_pseudogene Interval_55877 chr14 101736743 101738353 + 0 NA intron (ENSMUSG00000033060.16, intron 1 of 30) protein_coding-intron (ENSMUSG00000033060.16, intron 1 of 30) -7733 ENSMUSG00000053821.4 ENSMUSG00000053821 ENSMUST00000066461 Gm9922 bidirectional_promoter_lncRNA Interval_152691 chr7 136335398 136336069 + 0 NA intron (ENSMUSG00000109633.1, intron 4 of 4) lincRNA-intron (ENSMUSG00000109633.1, intron 4 of 4) 13682 ENSMUSG00000109633.1 ENSMUSG00000109633 ENSMUST00000209560 C230079O03Rik lincRNA Interval_72978 chr17 33918382 33921033 + 0 NA promoter-TSS (ENSMUSG00000024308.15) protein_coding-promoter-TSS (ENSMUSG00000024308.15) 582 ENSMUSG00000101438.2 ENSMUSG00000101438 ENSMUST00000189156 Gm19412 antisense Interval_104795 chr3 73541695 73542281 + 0 NA intron (ENSMUSG00000103428.1, intron 2 of 4) lincRNA-intron (ENSMUSG00000103428.1, intron 2 of 4) -60337 ENSMUSG00000102362.1 ENSMUSG00000102362 ENSMUST00000194514 4930509J09Rik lincRNA Interval_107588 chr3 108721630 108722891 + 0 NA promoter-TSS (ENSMUSG00000027883.15) protein_coding-promoter-TSS (ENSMUSG00000027883.15) 13352 ENSMUSG00000098800.1 ENSMUSG00000098800 ENSMUST00000184260 Gm27244 antisense Interval_12541 chr1 195033575 195034326 + 0 NA exon (ENSMUSG00000096929.7, exon 8 of 8) processed_transcript-exon (ENSMUSG00000096929.7, exon 8 of 8) -3090 ENSMUSG00000065412.3 ENSMUSG00000065412 ENSMUST00000083478 Mir29b-2 miRNA Interval_103902 chr3 54755005 54756389 + 0 NA intron (ENSMUSG00000027796.2, intron 1 of 5) protein_coding-intron (ENSMUSG00000027796.2, intron 1 of 5) 115 ENSMUSG00000027796.2 ENSMUSG00000027796 ENSMUST00000029371 Smad9 protein_coding Interval_57452 chr15 11075778 11076192 + 0 NA intron (ENSMUSG00000047497.10, intron 2 of 2) protein_coding-intron (ENSMUSG00000047497.10, intron 2 of 23) 11167 ENSMUSG00000047497.10 ENSMUSG00000047497 ENSMUST00000228940 Adamts12 protein_coding Interval_32116 chr11 105320549 105321139 + 0 NA intron (ENSMUSG00000020695.14, intron 1 of 2) protein_coding-intron (ENSMUSG00000020695.14, intron 1 of 19) -19988 ENSMUSG00000020695.14 ENSMUSG00000020695 ENSMUST00000151135 Mrc2 protein_coding Interval_69107 chr16 90713836 90714462 + 0 NA Intergenic Intergenic 12990 ENSMUSG00000022978.11 ENSMUSG00000022978 ENSMUST00000147546 Mis18a protein_coding Interval_74141 chr17 46751675 46752683 + 0 NA promoter-TSS (ENSMUSG00000023973.13) protein_coding-promoter-TSS (ENSMUSG00000023973.13) -2 ENSMUSG00000023973.13 ENSMUSG00000023973 ENSMUST00000148656 Cnpy3 protein_coding Interval_95060 chr2 103616511 103617029 + 0 NA intron (ENSMUSG00000032724.5, intron 1 of 16) protein_coding-intron (ENSMUSG00000032724.5, intron 1 of 16) 69511 ENSMUSG00000081687.1 ENSMUSG00000081687 ENSMUST00000118456 Gm13996 processed_pseudogene Interval_166310 chr9 58240672 58242989 + 0 NA intron (ENSMUSG00000036986.16, intron 2 of 7) protein_coding-intron (ENSMUSG00000036986.16, intron 2 of 8) -11358 ENSMUSG00000032333.6 ENSMUSG00000032333 ENSMUST00000216864 Stoml1 protein_coding Interval_125525 chr5 68105400 68106136 + 0 NA intron (ENSMUSG00000068082.12, intron 1 of 3) protein_coding-intron (ENSMUSG00000068082.12, intron 1 of 3) -21394 ENSMUSG00000106747.1 ENSMUSG00000106747 ENSMUST00000201764 Gm43025 TEC Interval_72191 chr17 28510589 28511279 + 0 NA intron (ENSMUSG00000024222.17, intron 1 of 2) protein_coding-intron (ENSMUSG00000024222.17, intron 1 of 13) 6580 ENSMUSG00000024222.17 ENSMUSG00000024222 ENSMUST00000147716 Fkbp5 protein_coding Interval_42368 chr13 12418153 12419785 + 0 NA intron (ENSMUSG00000050244.9, intron 24 of 44) protein_coding-intron (ENSMUSG00000050244.9, intron 24 of 44) 6636 ENSMUSG00000113931.1 ENSMUSG00000113931 ENSMUST00000221839 Gm5928 processed_pseudogene Interval_23796 chr11 26341660 26342130 + 0 NA Intergenic Intergenic -4192 ENSMUSG00000065889.1 ENSMUSG00000065889 ENSMUST00000083955 Gm22868 snRNA Interval_127331 chr5 103074861 103075955 + 0 NA intron (ENSMUSG00000046709.18, intron 2 of 13) protein_coding-intron (ENSMUSG00000046709.18, intron 2 of 13) -89095 ENSMUSG00000105947.1 ENSMUSG00000105947 ENSMUST00000199275 Gm43789 TEC Interval_111753 chr4 27436613 27436915 + 0 NA Intergenic Intergenic -106414 ENSMUSG00000084163.1 ENSMUSG00000084163 ENSMUST00000120412 Gm11901 processed_pseudogene Interval_139580 chr6 101550942 101551509 + 0 NA Intergenic Intergenic 12472 ENSMUSG00000107696.1 ENSMUSG00000107696 ENSMUST00000203701 Gm44171 TEC Interval_141464 chr6 128429431 128430782 + 0 NA TTS (ENSMUSG00000030357.10) protein_coding-TTS (ENSMUSG00000030357.10) -5188 ENSMUSG00000001518.12 ENSMUSG00000001518 ENSMUST00000204467 Itfg2 protein_coding Interval_36773 chr12 53632760 53633083 + 0 NA intron (ENSMUSG00000021010.9, intron 3 of 11) protein_coding-intron (ENSMUSG00000021010.9, intron 3 of 11) -323075 ENSMUSG00000113179.1 ENSMUSG00000113179 ENSMUST00000221214 1700030L22Rik antisense Interval_7774 chr1 133586233 133587171 + 0 NA Intergenic Intergenic -14521 ENSMUSG00000064814.1 ENSMUSG00000064814 ENSMUST00000082880 Gm23939 snoRNA Interval_22507 chr11 11234217 11234499 + 0 NA intron (ENSMUSG00000050830.17, intron 3 of 4) protein_coding-intron (ENSMUSG00000050830.17, intron 2 of 3) -78075 ENSMUSG00000082875.1 ENSMUSG00000082875 ENSMUST00000117333 Gm12598 processed_pseudogene Interval_163881 chr9 27478299 27478700 + 0 NA Intergenic Intergenic -74981 ENSMUSG00000111694.1 ENSMUSG00000111694 ENSMUST00000214666 Gm48901 lincRNA Interval_43114 chr13 24265958 24266290 + 0 NA intron (ENSMUSG00000021338.17, intron 2 of 5) protein_coding-intron (ENSMUSG00000021338.17, intron 2 of 37) 25681 ENSMUSG00000083409.1 ENSMUSG00000083409 ENSMUST00000119226 Gm11340 processed_pseudogene Interval_35864 chr12 31303282 31303865 + 0 NA intron (ENSMUSG00000002900.17, intron 19 of 32) protein_coding-intron (ENSMUSG00000002900.17, intron 19 of 32) 38279 ENSMUSG00000002900.17 ENSMUSG00000002900 ENSMUST00000172134 Lamb1 protein_coding Interval_76174 chr17 76074953 76075888 + 0 NA TTS (ENSMUSG00000077299.1) snRNA-TTS (ENSMUSG00000077299.1) 874 ENSMUSG00000077299.1 ENSMUSG00000077299 ENSMUST00000104111 Gm24126 snRNA Interval_2513 chr1 39900181 39901566 + 0 NA promoter-TSS (ENSMUSG00000026074.15) protein_coding-promoter-TSS (ENSMUSG00000026074.15) -306 ENSMUSG00000026074.15 ENSMUSG00000026074 ENSMUST00000191657 Map4k4 protein_coding Interval_158675 chr8 85082972 85083740 + 0 NA promoter-TSS (ENSMUSG00000005142.10) protein_coding-promoter-TSS (ENSMUSG00000005142.10) -932 ENSMUSG00000005142.10 ENSMUSG00000005142 ENSMUST00000211223 Man2b1 protein_coding Interval_120789 chr4 150656049 150656694 + 0 NA Intergenic Intergenic -12282 ENSMUSG00000039838.11 ENSMUSG00000039838 ENSMUST00000147706 Slc45a1 protein_coding Interval_154187 chr8 13287227 13288589 + 0 NA promoter-TSS (ENSMUSG00000038497.7) protein_coding-promoter-TSS (ENSMUSG00000038497.7) -330 ENSMUSG00000038497.7 ENSMUSG00000038497 ENSMUST00000210750 Tmco3 protein_coding Interval_65899 chr16 30120520 30121325 + 0 NA Intergenic Intergenic -18537 ENSMUSG00000116887.1 ENSMUSG00000116887 ENSMUST00000231327 Gm6029 processed_pseudogene Interval_21441 chr10 128625371 128627356 + 0 NA promoter-TSS (ENSMUSG00000025362.6) protein_coding-promoter-TSS (ENSMUSG00000025362.6) 161 ENSMUSG00000025362.6 ENSMUSG00000025362 ENSMUST00000219773 Rps26 protein_coding Interval_106330 chr3 95410564 95411178 + 0 NA exon (ENSMUSG00000096177.2, exon 1 of 1) processed_pseudogene-exon (ENSMUSG00000096177.2, exon 1 of 1) 336 ENSMUSG00000096177.2 ENSMUSG00000096177 ENSMUST00000177599 Gm5070 processed_pseudogene Interval_125511 chr5 67831126 67832406 + 0 NA intron (ENSMUSG00000037685.15, intron 1 of 33) protein_coding-intron (ENSMUSG00000037685.15, intron 1 of 36) 5062 ENSMUSG00000106837.1 ENSMUSG00000106837 ENSMUST00000202983 D630030B08Rik TEC Interval_116830 chr4 117555686 117556250 + 0 NA intron (ENSMUSG00000033423.16, intron 1 of 2) protein_coding-intron (ENSMUSG00000033423.16, intron 2 of 8) -8790 ENSMUSG00000033423.16 ENSMUSG00000033423 ENSMUST00000134379 Eri3 protein_coding Interval_65934 chr16 30353062 30354272 + 0 NA TTS (ENSMUSG00000022533.14) protein_coding-TTS (ENSMUSG00000022533.14) -19819 ENSMUSG00000022533.14 ENSMUSG00000022533 ENSMUST00000136065 Atp13a3 protein_coding Interval_69865 chr16 97717623 97718367 + 0 NA Intergenic Intergenic 45792 ENSMUSG00000005251.15 ENSMUSG00000005251 ENSMUST00000019386 Ripk4 protein_coding Interval_166944 chr9 64066640 64067641 + 0 NA Intergenic Intergenic -13621 ENSMUSG00000093759.1 ENSMUSG00000093759 ENSMUST00000176950 Scarletltr processed_transcript Interval_105834 chr3 89607227 89607718 + 0 NA intron (ENSMUSG00000000794.9, intron 2 of 7) protein_coding-intron (ENSMUSG00000000794.9, intron 2 of 7) -55046 ENSMUSG00000000794.9 ENSMUSG00000000794 ENSMUST00000124584 Kcnn3 protein_coding Interval_30612 chr11 95457208 95457893 + 0 NA intron (ENSMUSG00000057522.15, intron 2 of 4) protein_coding-intron (ENSMUSG00000057522.15, intron 1 of 9) 5171 ENSMUSG00000083208.1 ENSMUSG00000083208 ENSMUST00000120533 Gm11522 processed_pseudogene Interval_121906 chr5 9426938 9428167 + 0 NA intron (ENSMUSG00000056004.16, intron 8 of 21) protein_coding-intron (ENSMUSG00000056004.16, intron 8 of 21) 51848 ENSMUSG00000077896.1 ENSMUSG00000077896 ENSMUST00000104703 Mir879 miRNA Interval_138216 chr6 86379595 86380928 + 0 NA TTS (ENSMUSG00000057278.8) protein_coding-TTS (ENSMUSG00000057278.8) -4976 ENSMUSG00000107509.1 ENSMUSG00000107509 ENSMUST00000204216 Gm44941 antisense Interval_165737 chr9 52034311 52034797 + 0 NA Intergenic Intergenic -13617 ENSMUSG00000032050.18 ENSMUSG00000032050 ENSMUST00000061352 Rdx protein_coding Interval_117091 chr4 119463641 119463840 + 0 NA intron (ENSMUSG00000070806.5, intron 2 of 2) protein_coding-intron (ENSMUSG00000070806.5, intron 2 of 2) 28769 ENSMUSG00000048899.8 ENSMUSG00000048899 ENSMUST00000126728 Rimkla protein_coding Interval_86627 chr19 42143909 42144670 + 0 NA Intergenic Intergenic -3419 ENSMUSG00000044345.9 ENSMUSG00000044345 ENSMUST00000184186 Marveld1 protein_coding Interval_46250 chr13 63015551 63015860 + 0 NA TTS (ENSMUSG00000021458.17) protein_coding-TTS (ENSMUSG00000021458.17) 5746 ENSMUSG00000113708.1 ENSMUSG00000113708 ENSMUST00000220958 Gm47584 TEC Interval_107150 chr3 103931465 103932475 + 0 NA intron (ENSMUSG00000044098.14, intron 3 of 7) protein_coding-intron (ENSMUSG00000044098.14, intron 2 of 7) 3352 ENSMUSG00000044098.14 ENSMUSG00000044098 ENSMUST00000185731 Rsbn1 protein_coding Interval_68099 chr16 65047270 65047810 + 0 NA intron (ENSMUSG00000050783.5, intron 2 of 2) protein_coding-intron (ENSMUSG00000050783.5, intron 2 of 2) 58314 ENSMUSG00000050783.5 ENSMUSG00000050783 ENSMUST00000063076 Htr1f protein_coding Interval_72967 chr17 33864488 33866400 + 0 NA Intergenic Intergenic -1216 ENSMUSG00000092571.1 ENSMUSG00000092571 ENSMUST00000173244 Gm4134 unprocessed_pseudogene Interval_129775 chr5 122269045 122269600 + 0 NA Intergenic Intergenic -4907 ENSMUSG00000038593.18 ENSMUSG00000038593 ENSMUST00000177148 Tctn1 protein_coding Interval_114118 chr4 63608067 63608352 + 0 NA intron (ENSMUSG00000058935.14, intron 4 of 4) protein_coding-intron (ENSMUSG00000058935.14, intron 4 of 4) -7445 ENSMUSG00000084782.2 ENSMUSG00000084782 ENSMUST00000136620 Gm11213 protein_coding Interval_171331 chr9 116450757 116451633 + 0 NA Intergenic Intergenic 120027 ENSMUSG00000110752.1 ENSMUSG00000110752 ENSMUST00000217456 D730003K21Rik lincRNA Interval_147762 chr7 73422456 73422915 + 0 NA exon (ENSMUSG00000108601.1, exon 1 of 1) TEC-exon (ENSMUSG00000108601.1, exon 1 of 1) 435 ENSMUSG00000108601.1 ENSMUSG00000108601 ENSMUST00000205492 Gm44645 TEC Interval_119443 chr4 137659175 137660617 + 0 NA Intergenic Intergenic -4858 ENSMUSG00000041351.16 ENSMUSG00000041351 ENSMUST00000144059 Rap1gap protein_coding Interval_49353 chr13 111430342 111431876 + 0 NA intron (ENSMUSG00000032745.18, intron 10 of 10) protein_coding-intron (ENSMUSG00000032745.18, intron 12 of 12) 22314 ENSMUSG00000032745.18 ENSMUSG00000032745 ENSMUST00000129638 Gpbp1 protein_coding Interval_155872 chr8 40522954 40524270 + 0 NA intron (ENSMUSG00000031600.11, intron 1 of 5) protein_coding-intron (ENSMUSG00000031600.11, intron 1 of 11) -12308 ENSMUSG00000031601.16 ENSMUSG00000031601 ENSMUST00000139558 Cnot7 protein_coding Interval_53255 chr14 55609960 55610149 + 0 NA TTS (ENSMUSG00000002325.15) protein_coding-TTS (ENSMUSG00000002325.15) 2236 ENSMUSG00000002325.15 ENSMUSG00000002325 ENSMUST00000226275 Irf9 protein_coding Interval_59579 chr15 55556694 55558045 + 0 NA promoter-TSS (ENSMUSG00000022369.13) protein_coding-promoter-TSS (ENSMUSG00000022369.13) 379 ENSMUSG00000022370.13 ENSMUSG00000022370 ENSMUST00000170135 Mrpl13 protein_coding Interval_99172 chr2 157751551 157752598 + 0 NA intron (ENSMUSG00000027649.15, intron 1 of 15) protein_coding-intron (ENSMUSG00000027649.15, intron 1 of 15) 26074 ENSMUSG00000084417.1 ENSMUSG00000084417 ENSMUST00000122468 Gm23463 snRNA Interval_2822 chr1 45864969 45866965 + 0 NA Intergenic Intergenic -8213 ENSMUSG00000084817.3 ENSMUSG00000084817 ENSMUST00000153604 Gm5526 processed_pseudogene Interval_38709 chr12 81412092 81412295 + 0 NA intron (ENSMUSG00000091803.7, intron 3 of 4) protein_coding-intron (ENSMUSG00000091803.7, intron 3 of 3) 9753 ENSMUSG00000072972.3 ENSMUSG00000072972 ENSMUST00000085319 Adam4 protein_coding Interval_82674 chr18 75837752 75838231 + 0 NA intron (ENSMUSG00000044646.15, intron 1 of 5) protein_coding-intron (ENSMUSG00000044646.15, intron 1 of 4) 17776 ENSMUSG00000044646.15 ENSMUSG00000044646 ENSMUST00000167921 Zbtb7c protein_coding Interval_160023 chr8 105860076 105861212 + 0 NA promoter-TSS (ENSMUSG00000008450.8) protein_coding-promoter-TSS (ENSMUSG00000008450.8) -1 ENSMUSG00000008450.8 ENSMUSG00000008450 ENSMUST00000212042 Nutf2 protein_coding Interval_84215 chr19 8830996 8831942 + 0 NA exon (ENSMUSG00000071659.4, exon 14 of 14) protein_coding-exon (ENSMUSG00000071659.4, exon 14 of 14) 1696 ENSMUSG00000118124.1 ENSMUSG00000118124 ENSMUST00000237654 Gm50139 protein_coding Interval_30859 chr11 96916013 96917061 + 0 NA promoter-TSS (ENSMUSG00000018669.14) protein_coding-promoter-TSS (ENSMUSG00000018669.14) -430 ENSMUSG00000018669.14 ENSMUSG00000018669 ENSMUST00000130767 Cdk5rap3 protein_coding Interval_93192 chr2 71039073 71039993 + 0 NA intron (ENSMUSG00000041975.17, intron 1 of 10) protein_coding-intron (ENSMUSG00000041975.17, intron 1 of 5) -16211 ENSMUSG00000041966.18 ENSMUSG00000041966 ENSMUST00000132619 Dcaf17 protein_coding Interval_6359 chr1 106273849 106274804 + 0 NA intron (ENSMUSG00000044340.7, intron 1 of 16) protein_coding-intron (ENSMUSG00000044340.7, intron 1 of 16) -7099 ENSMUSG00000044340.7 ENSMUSG00000044340 ENSMUST00000124895 Phlpp1 protein_coding Interval_125381 chr5 66578965 66579435 + 0 NA intron (ENSMUSG00000029207.16, intron 1 of 5) protein_coding-intron (ENSMUSG00000029207.16, intron 1 of 17) 16370 ENSMUSG00000106706.1 ENSMUSG00000106706 ENSMUST00000201865 C530043K16Rik TEC Interval_123110 chr5 29762515 29762760 + 0 NA intron (ENSMUSG00000029131.14, intron 5 of 8) protein_coding-intron (ENSMUSG00000029131.14, intron 5 of 9) 26648 ENSMUSG00000029131.14 ENSMUSG00000029131 ENSMUST00000139126 Dnajb6 protein_coding Interval_76291 chr17 78782972 78783454 + 0 NA intron (ENSMUSG00000039414.10, intron 26 of 35) protein_coding-intron (ENSMUSG00000039414.10, intron 26 of 35) -14149 ENSMUSG00000039414.10 ENSMUSG00000039414 ENSMUST00000232917 Heatr5b protein_coding Interval_128265 chr5 112153576 112155653 + 0 NA Intergenic Intergenic -1623 ENSMUSG00000104538.1 ENSMUSG00000104538 ENSMUST00000197688 1700016B01Rik lincRNA Interval_83892 chr19 5388022 5390033 + 0 NA promoter-TSS (ENSMUSG00000039148.5) protein_coding-promoter-TSS (ENSMUSG00000039148.5) 691 ENSMUSG00000117959.1 ENSMUSG00000117959 ENSMUST00000237256 D330050I16Rik antisense Interval_73349 chr17 36444440 36445433 + 0 NA promoter-TSS (ENSMUSG00000092437.1) processed_pseudogene-promoter-TSS (ENSMUSG00000092437.1) -187 ENSMUSG00000092437.1 ENSMUSG00000092437 ENSMUST00000173020 Rpl9-ps9 processed_pseudogene Interval_171982 chr9 123162901 123163747 + 0 NA TTS (ENSMUSG00000077659.1) snoRNA-TTS (ENSMUSG00000077659.1) 953 ENSMUSG00000077659.1 ENSMUSG00000077659 ENSMUST00000104471 Gm23323 snoRNA Interval_47363 chr13 81943949 81944502 + 0 NA Intergenic Intergenic -14538 ENSMUSG00000114634.1 ENSMUSG00000114634 ENSMUST00000224647 F830210D05Rik TEC Interval_125247 chr5 65651947 65652228 + 0 NA intron (ENSMUSG00000029202.12, intron 11 of 32) protein_coding-intron (ENSMUSG00000029202.12, intron 11 of 31) -8719 ENSMUSG00000088494.1 ENSMUSG00000088494 ENSMUST00000157869 Gm24399 snRNA Interval_110387 chr3 157634275 157634582 + 0 NA intron (ENSMUSG00000040016.16, intron 2 of 2) protein_coding-intron (ENSMUSG00000040016.16, intron 2 of 2) 67528 ENSMUSG00000040016.16 ENSMUSG00000040016 ENSMUST00000173533 Ptger3 protein_coding Interval_103689 chr3 51646508 51647027 + 0 NA Intergenic Intergenic -9839 ENSMUSG00000104166.1 ENSMUSG00000104166 ENSMUST00000194675 Gm38247 processed_pseudogene Interval_78018 chr18 6764639 6765657 + 0 NA promoter-TSS (ENSMUSG00000073639.6) protein_coding-promoter-TSS (ENSMUSG00000073639.6) 3 ENSMUSG00000073639.6 ENSMUSG00000073639 ENSMUST00000097680 Rab18 protein_coding Interval_151033 chr7 118057626 118057810 + 0 NA Intergenic Intergenic 57538 ENSMUSG00000008683.16 ENSMUSG00000008683 ENSMUST00000128482 Rps15a protein_coding Interval_63807 chr15 103595435 103596171 + 0 NA Intergenic Intergenic -7435 ENSMUSG00000115819.1 ENSMUSG00000115819 ENSMUST00000228186 Gm9108 processed_pseudogene Interval_13920 chr10 24634031 24634871 + 0 NA Intergenic Intergenic 38725 ENSMUSG00000019997.11 ENSMUSG00000019997 ENSMUST00000129142 Ccn2 protein_coding Interval_155149 chr8 27068086 27068932 + 0 NA Intergenic Intergenic 17735 ENSMUSG00000031485.15 ENSMUSG00000031485 ENSMUST00000211756 Plpbp protein_coding Interval_29510 chr11 84549360 84549975 + 0 NA Intergenic Intergenic 24007 ENSMUSG00000087211.7 ENSMUSG00000087211 ENSMUST00000128121 Lhx1os lincRNA Interval_152069 chr7 128762498 128763129 + 0 NA intron (ENSMUSG00000055319.8, intron 8 of 18) protein_coding-intron (ENSMUSG00000055319.8, intron 8 of 18) 12150 ENSMUSG00000077283.1 ENSMUSG00000077283 ENSMUST00000104095 n-R5s158 rRNA Interval_100414 chr2 168893246 168895364 + 0 NA exon (ENSMUSG00000027551.15, exon 9 of 9) protein_coding-exon (ENSMUSG00000027551.15, exon 9 of 9) -12137 ENSMUSG00000077761.1 ENSMUSG00000077761 ENSMUST00000104573 Gm25214 snoRNA Interval_22502 chr11 11194682 11194958 + 0 NA intron (ENSMUSG00000050830.17, intron 3 of 4) protein_coding-intron (ENSMUSG00000050830.17, intron 2 of 3) 54306 ENSMUSG00000088861.1 ENSMUSG00000088861 ENSMUST00000158236 Gm23065 rRNA Interval_39030 chr12 84564431 84564899 + 0 NA Intergenic Intergenic -5175 ENSMUSG00000021239.12 ENSMUSG00000021239 ENSMUST00000169934 Vsx2 protein_coding Interval_65035 chr16 18617402 18618098 + 0 NA Intergenic Intergenic 3890 ENSMUSG00000050761.4 ENSMUSG00000050761 ENSMUST00000051160 Gp1bb protein_coding Interval_51973 chr14 34359561 34360353 + 0 NA Intergenic Intergenic -4524 ENSMUSG00000043681.5 ENSMUSG00000043681 ENSMUST00000052126 Fam25c protein_coding Interval_167491 chr9 69988930 69990626 + 0 NA exon (ENSMUSG00000101555.1, exon 1 of 1) antisense-exon (ENSMUSG00000101555.1, exon 1 of 1) 190 ENSMUSG00000101555.1 ENSMUSG00000101555 ENSMUST00000185564 Gm28731 antisense Interval_155775 chr8 37355400 37355650 + 0 NA Intergenic Intergenic -4772 ENSMUSG00000110312.1 ENSMUSG00000110312 ENSMUST00000209323 Gm45368 lincRNA Interval_52795 chr14 50376080 50376378 + 0 NA Intergenic Intergenic -4934 ENSMUSG00000047716.4 ENSMUSG00000047716 ENSMUST00000058965 Olfr736 protein_coding Interval_157853 chr8 74979996 74981161 + 0 NA Intergenic Intergenic -19291 ENSMUSG00000034518.14 ENSMUSG00000034518 ENSMUST00000129391 Hmgxb4 protein_coding Interval_23140 chr11 20137956 20141027 + 0 NA Intergenic Intergenic -3077 ENSMUSG00000081346.1 ENSMUSG00000081346 ENSMUST00000121917 Gm12030 processed_pseudogene Interval_128132 chr5 111204793 111205156 + 0 NA intron (ENSMUSG00000033209.17, intron 6 of 22) protein_coding-intron (ENSMUSG00000033209.17, intron 7 of 23) 7834 ENSMUSG00000105027.1 ENSMUSG00000105027 ENSMUST00000197532 Gm43676 TEC Interval_79888 chr18 35751309 35752521 + 0 NA Intergenic Intergenic -11436 ENSMUSG00000024349.10 ENSMUSG00000024349 ENSMUST00000237405 Sting1 protein_coding Interval_146922 chr7 55880577 55881161 + 0 NA intron (ENSMUSG00000030447.15, intron 7 of 23) protein_coding-intron (ENSMUSG00000030447.15, intron 9 of 30) 9010 ENSMUSG00000030447.15 ENSMUSG00000030447 ENSMUST00000205656 Cyfip1 protein_coding Interval_69758 chr16 96081275 96083810 + 0 NA promoter-TSS (ENSMUSG00000022914.17) protein_coding-promoter-TSS (ENSMUSG00000022914.17) -134 ENSMUSG00000117289.1 ENSMUSG00000117289 ENSMUST00000233171 1700093J21Rik bidirectional_promoter_lncRNA Interval_15061 chr10 42275466 42278625 + 0 NA promoter-TSS (ENSMUSG00000048756.11) protein_coding-promoter-TSS (ENSMUSG00000048756.11) -18679 ENSMUSG00000048756.11 ENSMUSG00000048756 ENSMUST00000105501 Foxo3 protein_coding Interval_18907 chr10 93020753 93021014 + 0 NA TTS (ENSMUSG00000020014.17) protein_coding-TTS (ENSMUSG00000020014.17) 12079 ENSMUSG00000020014.17 ENSMUSG00000020014 ENSMUST00000171781 Cfap54 protein_coding Interval_126587 chr5 90492654 90492872 + 0 NA exon (ENSMUSG00000054932.6, exon 3 of 15) protein_coding-exon (ENSMUSG00000054932.6, exon 3 of 15) -14668 ENSMUSG00000054932.6 ENSMUSG00000054932 ENSMUST00000202209 Afp protein_coding Interval_9205 chr1 155056244 155056720 + 0 NA intron (ENSMUSG00000101880.1, intron 1 of 3) lincRNA-intron (ENSMUSG00000101880.1, intron 1 of 3) 697 ENSMUSG00000101880.1 ENSMUSG00000101880 ENSMUST00000190720 Gm29282 lincRNA Interval_129394 chr5 119709384 119711008 + 0 NA Intergenic Intergenic -18978 ENSMUSG00000086847.1 ENSMUSG00000086847 ENSMUST00000135385 Tbx3os2 lincRNA Interval_127252 chr5 101887019 101887238 + 0 NA intron (ENSMUSG00000043940.15, intron 36 of 64) protein_coding-intron (ENSMUSG00000043940.15, intron 39 of 66) 49676 ENSMUSG00000092354.7 ENSMUSG00000092354 ENSMUST00000174312 Gm20548 antisense Interval_84139 chr19 7464910 7465576 + 0 NA intron (ENSMUSG00000024758.15, intron 1 of 7) protein_coding-intron (ENSMUSG00000024758.15, intron 2 of 7) 18024 ENSMUSG00000024758.15 ENSMUSG00000024758 ENSMUST00000235593 Rtn3 protein_coding Interval_123544 chr5 33377872 33379106 + 0 NA promoter-TSS (ENSMUSG00000037355.14) protein_coding-promoter-TSS (ENSMUSG00000037355.14) -283 ENSMUSG00000037355.14 ENSMUSG00000037355 ENSMUST00000202816 Uvssa protein_coding Interval_27891 chr11 70668389 70670339 + 0 NA promoter-TSS (ENSMUSG00000018287.12) protein_coding-promoter-TSS (ENSMUSG00000018287.12) -146 ENSMUSG00000018287.12 ENSMUSG00000018287 ENSMUST00000129434 Spag7 protein_coding Interval_107579 chr3 108639359 108639654 + 0 NA intron (ENSMUSG00000040389.15, intron 13 of 14) protein_coding-intron (ENSMUSG00000040389.15, intron 13 of 14) 16157 ENSMUSG00000040389.15 ENSMUSG00000040389 ENSMUST00000144325 Wdr47 protein_coding Interval_172678 chrX 42050322 42051384 + 0 NA Intergenic Intergenic -9068 ENSMUSG00000025860.15 ENSMUSG00000025860 ENSMUST00000026978 Xiap protein_coding Interval_22070 chr11 6153889 6155069 + 0 NA intron (ENSMUSG00000053838.14, intron 1 of 2) protein_coding-intron (ENSMUSG00000053838.14, intron 2 of 5) 18557 ENSMUSG00000083022.1 ENSMUSG00000083022 ENSMUST00000117476 Rps15a-ps6 processed_pseudogene Interval_17507 chr10 77314092 77314299 + 0 NA intron (ENSMUSG00000020262.15, intron 5 of 10) protein_coding-intron (ENSMUSG00000020262.15, intron 5 of 10) 51747 ENSMUSG00000020260.9 ENSMUSG00000020260 ENSMUST00000218117 Pofut2 protein_coding Interval_132282 chr5 143916842 143917830 + 0 NA intron (ENSMUSG00000079109.11, intron 6 of 14) protein_coding-intron (ENSMUSG00000079109.11, intron 6 of 13) 7372 ENSMUSG00000079109.11 ENSMUSG00000079109 ENSMUST00000164999 Pms2 protein_coding Interval_85546 chr19 28374690 28375532 + 0 NA intron (ENSMUSG00000052942.13, intron 4 of 10) protein_coding-intron (ENSMUSG00000052942.13, intron 3 of 9) -74686 ENSMUSG00000052942.13 ENSMUSG00000052942 ENSMUST00000161328 Glis3 protein_coding Interval_97347 chr2 135199309 135200860 + 0 NA intron (ENSMUSG00000085247.1, intron 2 of 5) protein_coding-intron (ENSMUSG00000051177.16, intron 3 of 31) 15532 ENSMUSG00000085247.1 ENSMUSG00000085247 ENSMUST00000138303 4930545L23Rik antisense Interval_143711 chr7 15864266 15865541 + 0 NA Intergenic Intergenic 14969 ENSMUSG00000041578.15 ENSMUSG00000041578 ENSMUST00000132563 Crx protein_coding Interval_99325 chr2 159053683 159054297 + 0 NA Intergenic Intergenic -15873 ENSMUSG00000104628.1 ENSMUSG00000104628 ENSMUST00000196974 Gm44319 miRNA Interval_165808 chr9 53325197 53326022 + 0 NA intron (ENSMUSG00000034584.3, intron 1 of 5) protein_coding-intron (ENSMUSG00000034584.3, intron 1 of 5) -15580 ENSMUSG00000034584.3 ENSMUSG00000034584 ENSMUST00000139096 Exph5 protein_coding Interval_61334 chr15 80913627 80914025 + 0 NA intron (ENSMUSG00000047888.10, intron 10 of 16) protein_coding-intron (ENSMUSG00000047888.10, intron 18 of 24) -9238 ENSMUSG00000047888.10 ENSMUSG00000047888 ENSMUST00000228525 Tnrc6b protein_coding Interval_12626 chr10 3980605 3981165 + 0 NA intron (ENSMUSG00000040675.17, intron 4 of 27) protein_coding-intron (ENSMUSG00000040675.17, intron 4 of 27) -11486 ENSMUSG00000082247.1 ENSMUSG00000082247 ENSMUST00000119524 Gm16074 processed_pseudogene Interval_169212 chr9 95545909 95547628 + 0 NA Intergenic Intergenic -10464 ENSMUSG00000110827.1 ENSMUSG00000110827 ENSMUST00000217220 Gm32281 lincRNA Interval_89023 chr2 14676960 14677295 + 0 NA intron (ENSMUSG00000057914.15, intron 2 of 4) protein_coding-intron (ENSMUSG00000057914.15, intron 2 of 13) 3723 ENSMUSG00000104034.1 ENSMUSG00000104034 ENSMUST00000193601 2900092N22Rik TEC Interval_73850 chr17 44612679 44613016 + 0 NA intron (ENSMUSG00000039153.17, intron 3 of 4) protein_coding-intron (ENSMUSG00000039153.17, intron 6 of 7) 28296 ENSMUSG00000070209.1 ENSMUSG00000070209 ENSMUST00000093699 n-R5s27 rRNA Interval_7163 chr1 127348201 127348385 + 0 NA intron (ENSMUSG00000036155.13, intron 4 of 10) protein_coding-intron (ENSMUSG00000036155.13, intron 4 of 17) 16480 ENSMUSG00000106489.1 ENSMUSG00000106489 ENSMUST00000197008 Gm23370 scaRNA Interval_59811 chr15 59502163 59502553 + 0 NA intron (ENSMUSG00000059586.10, intron 5 of 7) protein_coding-intron (ENSMUSG00000059586.10, intron 4 of 6) -116232 ENSMUSG00000115896.1 ENSMUSG00000115896 ENSMUST00000229684 Gm36677 lincRNA Interval_614 chr1 8940441 8941955 + 0 NA intron (ENSMUSG00000025909.16, intron 3 of 20) protein_coding-intron (ENSMUSG00000025909.16, intron 3 of 19) 11224 ENSMUSG00000025909.16 ENSMUSG00000025909 ENSMUST00000126083 Sntg1 protein_coding Interval_30571 chr11 95178364 95179161 + 0 NA Intergenic Intergenic 1949 ENSMUSG00000083548.1 ENSMUSG00000083548 ENSMUST00000117670 Gm11514 processed_pseudogene Interval_37853 chr12 72572448 72572695 + 0 NA intron (ENSMUSG00000034501.7, intron 8 of 10) protein_coding-intron (ENSMUSG00000034501.7, intron 8 of 10) 36188 ENSMUSG00000034501.7 ENSMUSG00000034501 ENSMUST00000044352 Pcnx4 protein_coding Interval_66763 chr16 37292575 37292942 + 0 NA intron (ENSMUSG00000022829.14, intron 5 of 27) protein_coding-intron (ENSMUSG00000022829.14, intron 5 of 22) -59994 ENSMUSG00000116854.1 ENSMUSG00000116854 ENSMUST00000232416 Gm49567 processed_pseudogene Interval_173055 chrX 68820113 68821777 + 0 NA promoter-TSS (ENSMUSG00000071748.2) protein_coding-promoter-TSS (ENSMUSG00000071748.2) -148 ENSMUSG00000071748.2 ENSMUSG00000071748 ENSMUST00000096420 Gm14698 protein_coding Interval_76466 chr17 80405824 80406740 + 0 NA exon (ENSMUSG00000024241.7, exon 20 of 20) protein_coding-exon (ENSMUSG00000024241.7, exon 20 of 20) 24918 ENSMUSG00000054901.7 ENSMUSG00000054901 ENSMUST00000226013 Arhgef33 protein_coding Interval_171973 chr9 123098960 123099200 + 0 NA intron (ENSMUSG00000025786.17, intron 2 of 5) protein_coding-intron (ENSMUSG00000025786.17, intron 2 of 7) 14067 ENSMUSG00000025786.17 ENSMUSG00000025786 ENSMUST00000130717 Zdhhc3 protein_coding Interval_41254 chr12 112173693 112175076 + 0 NA intron (ENSMUSG00000021294.7, intron 9 of 15) protein_coding-intron (ENSMUSG00000021294.7, intron 9 of 15) -4770 ENSMUSG00000021294.7 ENSMUSG00000021294 ENSMUST00000183816 Kif26a protein_coding Interval_59282 chr15 50728634 50728986 + 0 NA intron (ENSMUSG00000038679.16, intron 7 of 8) protein_coding-intron (ENSMUSG00000038679.16, intron 5 of 6) 160304 ENSMUSG00000084458.1 ENSMUSG00000084458 ENSMUST00000122509 Mir1907 miRNA Interval_165939 chr9 54829713 54830910 + 0 NA Intergenic Intergenic -5029 ENSMUSG00000111686.1 ENSMUSG00000111686 ENSMUST00000213253 Rab7-ps1 processed_pseudogene Interval_105409 chr3 86069630 86070357 + 0 NA promoter-TSS (ENSMUSG00000028082.14) protein_coding-promoter-TSS (ENSMUSG00000028082.14) -14497 ENSMUSG00000028082.14 ENSMUSG00000028082 ENSMUST00000183202 Sh3d19 protein_coding Interval_22147 chr11 6615224 6616336 + 0 NA TTS (ENSMUSG00000000384.15) protein_coding-TTS (ENSMUSG00000000384.15) 4160 ENSMUSG00000064495.1 ENSMUSG00000064495 ENSMUST00000082561 Gm24313 snoRNA Interval_167450 chr9 69453137 69454437 + 0 NA promoter-TSS (ENSMUSG00000032231.14) protein_coding-promoter-TSS (ENSMUSG00000032231.14) -2752 ENSMUSG00000062874.6 ENSMUSG00000062874 ENSMUST00000071565 Gm4978 processed_pseudogene Interval_105269 chr3 84406514 84406833 + 0 NA Intergenic Intergenic -26752 ENSMUSG00000104004.1 ENSMUSG00000104004 ENSMUST00000192777 4930565D16Rik lincRNA Interval_7487 chr1 131799888 131800207 + 0 NA intron (ENSMUSG00000042251.12, intron 2 of 12) protein_coding-intron (ENSMUSG00000042251.12, intron 2 of 13) -12083 ENSMUSG00000042251.12 ENSMUSG00000042251 ENSMUST00000132450 Pm20d1 protein_coding Interval_143859 chr7 16792112 16792328 + 0 NA promoter-TSS (ENSMUSG00000001918.17) protein_coding-promoter-TSS (ENSMUSG00000001918.17) 9822 ENSMUSG00000001918.17 ENSMUSG00000001918 ENSMUST00000141349 Slc1a5 protein_coding Interval_160969 chr8 116572838 116573555 + 0 NA Intergenic Intergenic 68222 ENSMUSG00000034467.7 ENSMUSG00000034467 ENSMUST00000078170 Dynlrb2 protein_coding Interval_118507 chr4 132164948 132166300 + 0 NA Intergenic Intergenic -16740 ENSMUSG00000081394.1 ENSMUSG00000081394 ENSMUST00000117559 Gm13215 processed_pseudogene Interval_46871 chr13 72896378 72896608 + 0 NA Intergenic Intergenic -79730 ENSMUSG00000113082.1 ENSMUSG00000113082 ENSMUST00000223149 D730050B12Rik lincRNA Interval_62607 chr15 95526719 95528905 + 0 NA exon (ENSMUSG00000022454.17, exon 2 of 21) protein_coding-exon (ENSMUSG00000022454.17, exon 2 of 21) 366 ENSMUSG00000022454.17 ENSMUSG00000022454 ENSMUST00000075275 Nell2 protein_coding Interval_116449 chr4 112378699 112379581 + 0 NA Intergenic Intergenic 54845 ENSMUSG00000049972.4 ENSMUSG00000049972 ENSMUST00000058605 Skint9 protein_coding Interval_137156 chr6 68511161 68511354 + 0 NA Intergenic Intergenic -7755 ENSMUSG00000096515.5 ENSMUSG00000096515 ENSMUST00000103325 Igkv14-100 IG_V_gene Interval_38612 chr12 80545463 80545714 + 0 NA intron (ENSMUSG00000021130.8, intron 2 of 15) protein_coding-intron (ENSMUSG00000021130.8, intron 1 of 14) -26672 ENSMUSG00000097801.1 ENSMUSG00000097801 ENSMUST00000181852 Gm26777 bidirectional_promoter_lncRNA Interval_78159 chr18 9519258 9520169 + 0 NA Intergenic Intergenic -18545 ENSMUSG00000117435.1 ENSMUSG00000117435 ENSMUST00000234348 Gm7532 processed_pseudogene Interval_3759 chr1 62886904 62888076 + 0 NA Intergenic Intergenic -55120 ENSMUSG00000100426.1 ENSMUSG00000100426 ENSMUST00000189802 Gm4208 lincRNA Interval_94404 chr2 90781596 90783934 + 0 NA promoter-TSS (ENSMUSG00000040812.14) protein_coding-promoter-TSS (ENSMUSG00000040812.14) 38 ENSMUSG00000040812.14 ENSMUSG00000040812 ENSMUST00000149361 Agbl2 protein_coding Interval_95490 chr2 110149920 110150599 + 0 NA intron (ENSMUSG00000027160.16, intron 2 of 2) protein_coding-intron (ENSMUSG00000027160.16, intron 2 of 2) -46630 ENSMUSG00000085444.1 ENSMUSG00000085444 ENSMUST00000130416 Gm13936 antisense Interval_88880 chr2 11996259 11996472 + 0 NA Intergenic Intergenic 87627 ENSMUSG00000080801.2 ENSMUSG00000080801 ENSMUST00000120962 Gm13310 processed_pseudogene Interval_166144 chr9 57025347 57025686 + 0 NA intron (ENSMUSG00000032290.7, intron 2 of 3) protein_coding-intron (ENSMUSG00000032290.7, intron 4 of 12) 3284 ENSMUSG00000032290.7 ENSMUSG00000032290 ENSMUST00000215707 Ptpn9 protein_coding Interval_67763 chr16 56957838 56959894 + 0 NA Intergenic Intergenic -22837 ENSMUSG00000116866.1 ENSMUSG00000116866 ENSMUST00000232096 Gm8938 processed_pseudogene Interval_72889 chr17 32965114 32967263 + 0 NA promoter-TSS (ENSMUSG00000024295.9) transcribed_unprocessed_pseudogene-promoter-TSS (ENSMUSG00000024295.9) 343 ENSMUSG00000053600.8 ENSMUSG00000053600 ENSMUST00000234770 Zfp472 protein_coding Interval_152348 chr7 132173223 132173635 + 0 NA intron (ENSMUSG00000030849.18, intron 2 of 6) protein_coding-intron (ENSMUSG00000030849.18, intron 2 of 6) 19258 ENSMUSG00000086814.1 ENSMUSG00000086814 ENSMUST00000152302 Gm15677 antisense Interval_118209 chr4 129544072 129544690 + 0 NA Intergenic Intergenic 13430 ENSMUSG00000099070.1 ENSMUSG00000099070 ENSMUST00000183371 Mir8119 miRNA Interval_131555 chr5 138109690 138110257 + 0 NA Intergenic Intergenic 3066 ENSMUSG00000106102.1 ENSMUSG00000106102 ENSMUST00000199837 Gm43493 processed_pseudogene Interval_48111 chr13 96176308 96176918 + 0 NA Intergenic Intergenic 43244 ENSMUSG00000100475.1 ENSMUSG00000100475 ENSMUST00000188138 Gm29543 lincRNA Interval_38556 chr12 80112812 80113468 + 0 NA promoter-TSS (ENSMUSG00000021127.7) protein_coding-promoter-TSS (ENSMUSG00000021127.7) -146 ENSMUSG00000021127.7 ENSMUSG00000021127 ENSMUST00000218835 Zfp36l1 protein_coding Interval_102458 chr3 26857822 26858671 + 0 NA intron (ENSMUSG00000039335.11, intron 5 of 9) protein_coding-intron (ENSMUSG00000039335.11, intron 5 of 10) -154518 ENSMUSG00000103712.1 ENSMUSG00000103712 ENSMUST00000194574 Gm37659 processed_pseudogene Interval_89108 chr2 16506416 16507053 + 0 NA intron (ENSMUSG00000026748.13, intron 1 of 12) protein_coding-intron (ENSMUSG00000026748.13, intron 1 of 13) -131962 ENSMUSG00000026748.13 ENSMUSG00000026748 ENSMUST00000126173 Plxdc2 protein_coding Interval_66500 chr16 34386398 34386616 + 0 NA intron (ENSMUSG00000061751.16, intron 2 of 30) protein_coding-intron (ENSMUSG00000061751.16, intron 2 of 59) -279810 ENSMUSG00000022832.11 ENSMUSG00000022832 ENSMUST00000231612 Ropn1 protein_coding Interval_80593 chr18 44491575 44491862 + 0 NA intron (ENSMUSG00000071856.10, intron 5 of 16) protein_coding-intron (ENSMUSG00000071856.10, intron 7 of 18) 111216 ENSMUSG00000024472.9 ENSMUSG00000024472 ENSMUST00000025350 Dcp2 protein_coding Interval_33504 chr11 116905893 116906548 + 0 NA Intergenic Intergenic -41115 ENSMUSG00000043857.16 ENSMUSG00000043857 ENSMUST00000126757 Mgat5b protein_coding Interval_47490 chr13 85261261 85261708 + 0 NA intron (ENSMUSG00000021549.14, intron 1 of 24) protein_coding-intron (ENSMUSG00000021549.14, intron 1 of 24) 27646 ENSMUSG00000021549.14 ENSMUSG00000021549 ENSMUST00000132711 Rasa1 protein_coding Interval_11982 chr1 188260497 188260811 + 0 NA Intergenic Intergenic -1369 ENSMUSG00000026609.15 ENSMUSG00000026609 ENSMUST00000127077 Ush2a protein_coding Interval_159570 chr8 95528062 95529278 + 0 NA Intergenic Intergenic -5415 ENSMUSG00000036598.4 ENSMUSG00000036598 ENSMUST00000041569 Ccdc113 protein_coding Interval_139163 chr6 96590951 96591701 + 0 NA intron (ENSMUSG00000059187.12, intron 3 of 4) protein_coding-intron (ENSMUSG00000059187.12, intron 2 of 3) -30462 ENSMUSG00000077598.1 ENSMUSG00000077598 ENSMUST00000104410 Gm26011 snRNA Interval_51093 chr14 22575267 22575587 + 0 NA intron (ENSMUSG00000063458.13, intron 2 of 3) protein_coding-intron (ENSMUSG00000063458.13, intron 2 of 6) -16974 ENSMUSG00000059827.5 ENSMUSG00000059827 ENSMUST00000093546 Gm5670 processed_pseudogene Interval_132400 chr5 144713057 144713789 + 0 NA Intergenic Intergenic 10374 ENSMUSG00000082524.3 ENSMUSG00000082524 ENSMUST00000121256 Gm6272 processed_pseudogene Interval_51998 chr14 34517814 34518605 + 0 NA intron (ENSMUSG00000021797.2, intron 1 of 2) protein_coding-intron (ENSMUSG00000021797.2, intron 1 of 2) 2014 ENSMUSG00000115582.1 ENSMUSG00000115582 ENSMUST00000227512 Gm48953 processed_pseudogene Interval_1293 chr1 19236413 19237010 + 0 NA exon (ENSMUSG00000025927.13, exon 7 of 7) protein_coding-exon (ENSMUSG00000025927.13, exon 7 of 7) -6014 ENSMUSG00000100538.1 ENSMUSG00000100538 ENSMUST00000189218 Gm28340 lincRNA Interval_112167 chr4 35112352 35114249 + 0 NA intron (ENSMUSG00000073910.10, intron 1 of 1) protein_coding-intron (ENSMUSG00000073910.10, intron 1 of 3) -38756 ENSMUSG00000042993.6 ENSMUSG00000042993 ENSMUST00000058595 Ifnk protein_coding Interval_36216 chr12 39740483 39742970 + 0 NA Intergenic Intergenic -23460 ENSMUSG00000113277.1 ENSMUSG00000113277 ENSMUST00000220920 Gm18116 processed_pseudogene Interval_52031 chr14 34717572 34717806 + 0 NA intron (ENSMUSG00000041408.18, intron 1 of 2) protein_coding-intron (ENSMUSG00000041408.18, intron 4 of 18) -19582 ENSMUSG00000041408.18 ENSMUSG00000041408 ENSMUST00000174559 Wapl protein_coding Interval_167665 chr9 71693855 71694981 + 0 NA intron (ENSMUSG00000032232.14, intron 7 of 17) protein_coding-intron (ENSMUSG00000032232.14, intron 8 of 18) -63309 ENSMUSG00000032232.14 ENSMUSG00000032232 ENSMUST00000146567 Cgnl1 protein_coding Interval_66377 chr16 33479855 33480415 + 0 NA intron (ENSMUSG00000022811.17, intron 6 of 7) protein_coding-intron (ENSMUSG00000022811.17, intron 7 of 8) 99272 ENSMUSG00000022811.17 ENSMUSG00000022811 ENSMUST00000089677 Zfp148 protein_coding Interval_139046 chr6 94563099 94563831 + 0 NA intron (ENSMUSG00000045100.11, intron 4 of 11) protein_coding-intron (ENSMUSG00000045100.11, intron 5 of 9) 42950 ENSMUSG00000098531.1 ENSMUSG00000098531 ENSMUST00000183891 Mir7041 miRNA Interval_57771 chr15 19389303 19392193 + 0 NA intron (ENSMUSG00000114971.1, intron 2 of 3) lincRNA-intron (ENSMUSG00000114971.1, intron 2 of 3) 4674 ENSMUSG00000114971.1 ENSMUSG00000114971 ENSMUST00000228706 Gm49162 lincRNA Interval_87527 chr19 53259172 53259488 + 0 NA intron (ENSMUSG00000118314.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000118314.1, intron 1 of 2) -4140 ENSMUSG00000118314.1 ENSMUSG00000118314 ENSMUST00000237379 1700001K23Rik lincRNA Interval_151022 chr7 117872620 117873788 + 0 NA Intergenic Intergenic 96410 ENSMUSG00000088116.1 ENSMUSG00000088116 ENSMUST00000157491 Gm24063 miRNA Interval_164282 chr9 34989806 34990222 + 0 NA intron (ENSMUSG00000032036.15, intron 4 of 13) protein_coding-intron (ENSMUSG00000032036.15, intron 5 of 16) 29995 ENSMUSG00000089465.1 ENSMUSG00000089465 ENSMUST00000158840 Gm23702 rRNA Interval_48397 chr13 98766137 98767176 + 0 NA intron (ENSMUSG00000041685.16, intron 8 of 8) protein_coding-intron (ENSMUSG00000041685.16, intron 8 of 25) -17336 ENSMUSG00000041685.16 ENSMUSG00000041685 ENSMUST00000224416 Fcho2 protein_coding Interval_22539 chr11 11609299 11610065 + 0 NA intron (ENSMUSG00000062511.6, intron 2 of 3) protein_coding-intron (ENSMUSG00000062511.6, intron 2 of 3) 18153 ENSMUSG00000062511.6 ENSMUSG00000062511 ENSMUST00000149910 4930512M02Rik protein_coding Interval_165883 chr9 54195020 54195321 + 0 NA intron (ENSMUSG00000032274.9, intron 1 of 1) protein_coding-intron (ENSMUSG00000032274.9, intron 1 of 1) -13096 ENSMUSG00000032274.9 ENSMUSG00000032274 ENSMUST00000216974 Cyp19a1 protein_coding Interval_60288 chr15 72405752 72405985 + 0 NA Intergenic Intergenic 85151 ENSMUSG00000095149.1 ENSMUSG00000095149 ENSMUST00000179578 Gm24390 snRNA Interval_148926 chr7 90117562 90117889 + 0 NA Intergenic Intergenic -9757 ENSMUSG00000062235.6 ENSMUSG00000062235 ENSMUST00000058881 Gm5341 processed_pseudogene Interval_129256 chr5 118477751 118478732 + 0 NA Intergenic Intergenic -8726 ENSMUSG00000082365.2 ENSMUSG00000082365 ENSMUST00000119191 Gm15754 transcribed_processed_pseudogene Interval_78425 chr18 12740610 12741868 + 0 NA promoter-TSS (ENSMUSG00000024430.14) protein_coding-promoter-TSS (ENSMUSG00000024430.14) -72 ENSMUSG00000024430.14 ENSMUSG00000024430 ENSMUST00000191078 Cabyr protein_coding Interval_120297 chr4 145264017 145265451 + 0 NA Intergenic Intergenic -17864 ENSMUSG00000028599.10 ENSMUSG00000028599 ENSMUST00000143055 Tnfrsf1b protein_coding Interval_17203 chr10 74948875 74949137 + 0 NA Intergenic Intergenic -18203 ENSMUSG00000040009.6 ENSMUSG00000040009 ENSMUST00000159991 Gnaz protein_coding Interval_33934 chr11 119524240 119525029 + 0 NA Intergenic Intergenic 23119 ENSMUSG00000025582.4 ENSMUSG00000025582 ENSMUST00000026670 Nptx1 protein_coding Interval_159187 chr8 91476402 91477403 + 0 NA intron (ENSMUSG00000055932.15, intron 3 of 5) protein_coding-intron (ENSMUSG00000055932.15, intron 6 of 8) -2304 ENSMUSG00000110138.1 ENSMUSG00000110138 ENSMUST00000211287 4831440D22Rik antisense Interval_106513 chr3 96800449 96800785 + 0 NA exon (ENSMUSG00000038304.14, exon 5 of 5) protein_coding-exon (ENSMUSG00000038304.14, exon 5 of 5) 16292 ENSMUSG00000105976.1 ENSMUSG00000105976 ENSMUST00000197286 Gm42782 TEC Interval_1343 chr1 20803297 20803702 + 0 NA exon (ENSMUSG00000041859.10, exon 17 of 17) protein_coding-exon (ENSMUSG00000041859.10, exon 17 of 17) 1434 ENSMUSG00000041859.10 ENSMUSG00000041859 ENSMUST00000190421 Mcm3 protein_coding Interval_76179 chr17 76196463 76196776 + 0 NA Intergenic Intergenic -85315 ENSMUSG00000065293.1 ENSMUSG00000065293 ENSMUST00000083359 Gm26124 misc_RNA Interval_158653 chr8 84975597 84977942 + 0 NA promoter-TSS (ENSMUSG00000118643.1) processed_transcript-promoter-TSS (ENSMUSG00000118643.1) -227 ENSMUSG00000118643.1 ENSMUSG00000118643 ENSMUST00000209372 AC163703.1 processed_transcript Interval_120626 chr4 149751192 149752692 + 0 NA intron (ENSMUSG00000028982.9, intron 5 of 6) protein_coding-intron (ENSMUSG00000028982.9, intron 5 of 6) 3424 ENSMUSG00000085403.1 ENSMUSG00000085403 ENSMUST00000129397 Gm13068 antisense Interval_110988 chr4 11044791 11046467 + 0 NA Intergenic Intergenic 30554 ENSMUSG00000050323.14 ENSMUSG00000050323 ENSMUST00000141019 Ndufaf6 protein_coding Interval_103454 chr3 41655558 41655910 + 0 NA intron (ENSMUSG00000059834.12, intron 17 of 20) protein_coding-intron (ENSMUSG00000059834.12, intron 17 of 20) -6484 ENSMUSG00000102436.1 ENSMUSG00000102436 ENSMUST00000193690 Gm38047 TEC Interval_117912 chr4 127008456 127009089 + 0 NA Intergenic Intergenic -14755 ENSMUSG00000028820.13 ENSMUSG00000028820 ENSMUST00000125453 Sfpq protein_coding Interval_145101 chr7 30027390 30027747 + 0 NA exon (ENSMUSG00000074221.12, exon 9 of 9) protein_coding-exon (ENSMUSG00000074221.12, exon 9 of 9) 23812 ENSMUSG00000053985.10 ENSMUSG00000053985 ENSMUST00000077787 Zfp14 protein_coding Interval_81344 chr18 58614707 58615719 + 0 NA TTS (ENSMUSG00000077243.1) snoRNA-TTS (ENSMUSG00000077243.1) 276 ENSMUSG00000077243.1 ENSMUSG00000077243 ENSMUST00000104055 Gm23270 snoRNA Interval_174575 chrX 159265974 159266249 + 0 NA intron (ENSMUSG00000031309.15, intron 1 of 5) protein_coding-intron (ENSMUSG00000031309.15, intron 1 of 21) -10165 ENSMUSG00000031309.15 ENSMUSG00000031309 ENSMUST00000149939 Rps6ka3 protein_coding Interval_96394 chr2 122160653 122162221 + 0 NA intron (ENSMUSG00000033368.8, intron 1 of 7) protein_coding-intron (ENSMUSG00000027233.4, intron 2 of 17) 635 ENSMUSG00000033368.8 ENSMUSG00000033368 ENSMUST00000143088 Trim69 protein_coding Interval_144612 chr7 27128299 27128567 + 0 NA intron (ENSMUSG00000086868.1, intron 2 of 3) protein_coding-intron (ENSMUSG00000052974.8, intron 4 of 9) 2241 ENSMUSG00000086868.1 ENSMUSG00000086868 ENSMUST00000153562 Gm15883 antisense Interval_121796 chr5 8345576 8346105 + 0 NA intron (ENSMUSG00000040537.17, intron 2 of 4) protein_coding-intron (ENSMUSG00000040537.17, intron 2 of 28) -16445 ENSMUSG00000106265.1 ENSMUSG00000106265 ENSMUST00000198595 Gm42490 TEC Interval_78182 chr18 9878985 9879266 + 0 NA exon (ENSMUSG00000036103.9, exon 10 of 10) protein_coding-exon (ENSMUSG00000036103.9, exon 10 of 10) -30068 ENSMUSG00000117453.1 ENSMUSG00000117453 ENSMUST00000234777 Gm2424 processed_pseudogene Interval_78109 chr18 8235924 8236819 + 0 NA Intergenic Intergenic -8365 ENSMUSG00000117385.1 ENSMUSG00000117385 ENSMUST00000234783 Gm20147 processed_pseudogene Interval_38848 chr12 83361712 83361945 + 0 NA intron (ENSMUSG00000021221.15, intron 2 of 10) protein_coding-intron (ENSMUSG00000021221.15, intron 2 of 8) 125888 ENSMUSG00000021221.15 ENSMUSG00000021221 ENSMUST00000177801 Dpf3 protein_coding Interval_53380 chr14 56787372 56788047 + 0 NA promoter-TSS (ENSMUSG00000094250.1) processed_pseudogene-promoter-TSS (ENSMUSG00000094250.1) -22 ENSMUSG00000094250.1 ENSMUSG00000094250 ENSMUST00000178807 Gm4479 processed_pseudogene Interval_56484 chr14 119082725 119083148 + 0 NA intron (ENSMUSG00000042104.18, intron 7 of 38) protein_coding-intron (ENSMUSG00000042104.18, intron 7 of 11) -16029 ENSMUSG00000087479.1 ENSMUSG00000087479 ENSMUST00000140488 Gm16835 processed_transcript Interval_53973 chr14 63978223 63979181 + 0 NA intron (ENSMUSG00000021961.6, intron 2 of 3) protein_coding-intron (ENSMUSG00000021961.6, intron 2 of 3) 8801 ENSMUSG00000021961.6 ENSMUSG00000021961 ENSMUST00000225544 4930578I06Rik protein_coding Interval_144049 chr7 19194625 19194918 + 0 NA intron (ENSMUSG00000040811.15, intron 9 of 16) protein_coding-intron (ENSMUSG00000040811.15, intron 9 of 18) 13306 ENSMUSG00000065543.1 ENSMUSG00000065543 ENSMUST00000083609 Mir330 miRNA Interval_89048 chr2 15039274 15039782 + 0 NA intron (ENSMUSG00000026707.15, intron 3 of 3) protein_coding-intron (ENSMUSG00000026707.15, intron 4 of 10) -5352 ENSMUSG00000103778.1 ENSMUSG00000103778 ENSMUST00000195431 Gm36930 TEC Interval_138938 chr6 93659210 93659523 + 0 NA Intergenic Intergenic -9141 ENSMUSG00000107739.1 ENSMUSG00000107739 ENSMUST00000203479 Gm7812 processed_pseudogene Interval_81704 chr18 63730663 63731003 + 0 NA intron (ENSMUSG00000040560.10, intron 7 of 19) protein_coding-intron (ENSMUSG00000040560.10, intron 7 of 27) -8231 ENSMUSG00000040560.10 ENSMUSG00000040560 ENSMUST00000235428 Wdr7 protein_coding Interval_134524 chr6 29328747 29329859 + 0 NA intron (ENSMUSG00000039742.15, intron 4 of 6) protein_coding-intron (ENSMUSG00000039742.15, intron 4 of 6) -6097 ENSMUSG00000090692.1 ENSMUSG00000090692 ENSMUST00000171782 Gm17172 antisense Interval_59680 chr15 57878034 57878655 + 0 NA intron (ENSMUSG00000022365.6, intron 6 of 8) protein_coding-intron (ENSMUSG00000022365.6, intron 5 of 7) 12050 ENSMUSG00000022365.6 ENSMUSG00000022365 ENSMUST00000226911 Derl1 protein_coding Interval_32468 chr11 107705514 107705738 + 0 NA intron (ENSMUSG00000020722.5, intron 2 of 3) protein_coding-intron (ENSMUSG00000020722.5, intron 2 of 3) 10896 ENSMUSG00000020722.5 ENSMUSG00000020722 ENSMUST00000021065 Cacng1 protein_coding Interval_157008 chr8 64366120 64367465 + 0 NA Intergenic Intergenic 50308 ENSMUSG00000109579.1 ENSMUSG00000109579 ENSMUST00000211285 Gm35521 lincRNA Interval_30808 chr11 96622503 96623634 + 0 NA intron (ENSMUSG00000057058.16, intron 4 of 7) protein_coding-intron (ENSMUSG00000057058.16, intron 4 of 11) 139286 ENSMUSG00000057058.16 ENSMUSG00000057058 ENSMUST00000123814 Skap1 protein_coding Interval_131247 chr5 135982475 135982662 + 0 NA intron (ENSMUSG00000004948.12, intron 1 of 4) protein_coding-intron (ENSMUSG00000004948.12, intron 1 of 7) 2400 ENSMUSG00000004948.12 ENSMUSG00000004948 ENSMUST00000131563 Zp3 protein_coding Interval_61782 chr15 84105094 84106505 + 0 NA promoter-TSS (ENSMUSG00000018865.9) protein_coding-promoter-TSS (ENSMUSG00000018865.9) -190 ENSMUSG00000018865.9 ENSMUSG00000018865 ENSMUST00000229826 Sult4a1 protein_coding Interval_116483 chr4 114486857 114487078 + 0 NA intron (ENSMUSG00000070867.4, intron 2 of 6) protein_coding-intron (ENSMUSG00000070867.4, intron 2 of 6) 80243 ENSMUSG00000070867.4 ENSMUSG00000070867 ENSMUST00000094894 Trabd2b protein_coding Interval_32826 chr11 111205636 111205852 + 0 NA Intergenic Intergenic -70356 ENSMUSG00000082272.1 ENSMUSG00000082272 ENSMUST00000121873 Gm11675 processed_pseudogene Interval_141939 chr6 135676484 135677049 + 0 NA intron (ENSMUSG00000107396.2, intron 2 of 4) lincRNA-intron (ENSMUSG00000107396.2, intron 2 of 4) 17853 ENSMUSG00000107396.2 ENSMUSG00000107396 ENSMUST00000203439 4930425L21Rik lincRNA Interval_78619 chr18 15400421 15401495 + 0 NA promoter-TSS (ENSMUSG00000024411.11) protein_coding-promoter-TSS (ENSMUSG00000024411.11) -956 ENSMUSG00000024411.11 ENSMUSG00000024411 ENSMUST00000234140 Aqp4 protein_coding Interval_93523 chr2 73773044 73773404 + 0 NA intron (ENSMUSG00000056486.18, intron 1 of 9) protein_coding-intron (ENSMUSG00000056486.18, intron 1 of 12) -35938 ENSMUSG00000081062.1 ENSMUSG00000081062 ENSMUST00000118445 Gm13640 processed_pseudogene Interval_164995 chr9 43764392 43766290 + 0 NA intron (ENSMUSG00000032012.9, intron 1 of 7) protein_coding-intron (ENSMUSG00000032012.9, intron 1 of 5) 20697 ENSMUSG00000032012.9 ENSMUSG00000032012 ENSMUST00000180221 Nectin1 protein_coding Interval_100282 chr2 168154247 168155117 + 0 NA promoter-TSS (ENSMUSG00000087648.1) lincRNA-promoter-TSS (ENSMUSG00000087648.1) -169 ENSMUSG00000087648.1 ENSMUSG00000087648 ENSMUST00000129713 E130018N17Rik lincRNA Interval_62527 chr15 94391370 94391972 + 0 NA intron (ENSMUSG00000022449.14, intron 3 of 27) protein_coding-intron (ENSMUSG00000022449.14, intron 3 of 38) 12587 ENSMUSG00000022449.14 ENSMUSG00000022449 ENSMUST00000128797 Adamts20 protein_coding Interval_98226 chr2 150195386 150195609 + 0 NA Intergenic Intergenic 5104 ENSMUSG00000079009.8 ENSMUSG00000079009 ENSMUST00000109929 Gm14139 protein_coding Interval_45402 chr13 54893798 54894070 + 0 NA Intergenic Intergenic 6464 ENSMUSG00000100728.1 ENSMUSG00000100728 ENSMUST00000189848 Gm29431 lincRNA Interval_68126 chr16 65486303 65486541 + 0 NA Intergenic Intergenic -36855 ENSMUSG00000004842.18 ENSMUSG00000004842 ENSMUST00000184525 Pou1f1 protein_coding Interval_132542 chr5 146112857 146113375 + 0 NA exon (ENSMUSG00000061292.10, exon 13 of 13) protein_coding-exon (ENSMUSG00000061292.10, exon 13 of 13) 33859 ENSMUSG00000061292.10 ENSMUSG00000061292 ENSMUST00000035571 Cyp3a59 protein_coding Interval_134514 chr6 29272205 29273468 + 0 NA intron (ENSMUSG00000043421.8, intron 1 of 1) protein_coding-intron (ENSMUSG00000043421.8, intron 1 of 1) 348 ENSMUSG00000043421.8 ENSMUSG00000043421 ENSMUST00000054445 Hilpda protein_coding Interval_130709 chr5 129922164 129922739 + 0 NA Intergenic Intergenic 13911 ENSMUSG00000095789.6 ENSMUSG00000095789 ENSMUST00000192787 Nupr1l protein_coding Interval_13599 chr10 20124393 20125515 + 0 NA exon (ENSMUSG00000071369.11, exon 24 of 30) protein_coding-exon (ENSMUSG00000071369.11, exon 24 of 30) 153 ENSMUSG00000071369.11 ENSMUSG00000071369 ENSMUST00000156369 Map3k5 protein_coding Interval_97672 chr2 142604632 142605024 + 0 NA Intergenic Intergenic 27900 ENSMUSG00000083215.3 ENSMUSG00000083215 ENSMUST00000119377 Rbmx2-ps processed_pseudogene Interval_25591 chr11 50000450 50001408 + 0 NA Intergenic Intergenic -24418 ENSMUSG00000020376.17 ENSMUSG00000020376 ENSMUST00000143607 Rnf130 protein_coding Interval_25400 chr11 47467706 47468886 + 0 NA intron (ENSMUSG00000020354.15, intron 2 of 2) protein_coding-intron (ENSMUSG00000020354.15, intron 1 of 6) -73136 ENSMUSG00000082792.1 ENSMUSG00000082792 ENSMUST00000121420 Gm12176 processed_pseudogene Interval_163380 chr9 21168622 21169155 + 0 NA intron (ENSMUSG00000032177.17, intron 1 of 14) protein_coding-intron (ENSMUSG00000032177.17, intron 1 of 14) -15213 ENSMUSG00000032177.17 ENSMUSG00000032177 ENSMUST00000003395 Pde4a protein_coding Interval_98078 chr2 147688775 147689395 + 0 NA Intergenic Intergenic 21070 ENSMUSG00000081741.1 ENSMUSG00000081741 ENSMUST00000119382 Gm14106 processed_pseudogene Interval_68361 chr16 74205708 74206443 + 0 NA intron (ENSMUSG00000052516.19, intron 2 of 21) protein_coding-intron (ENSMUSG00000052516.19, intron 2 of 25) -13576 ENSMUSG00000116832.1 ENSMUSG00000116832 ENSMUST00000232537 Gm49658 TEC Interval_84585 chr19 13756668 13757142 + 0 NA Intergenic Intergenic -7701 ENSMUSG00000047207.3 ENSMUSG00000047207 ENSMUST00000061669 Olfr1495 protein_coding Interval_71656 chr17 25177835 25178053 + 0 NA Intergenic Intergenic -2473 ENSMUSG00000114245.1 ENSMUSG00000114245 ENSMUST00000224277 Gm38655 protein_coding Interval_26996 chr11 62277965 62278395 + 0 NA intron (ENSMUSG00000014243.5, intron 1 of 4) protein_coding-intron (ENSMUSG00000014243.5, intron 1 of 4) 3195 ENSMUSG00000014243.5 ENSMUSG00000014243 ENSMUST00000072916 Zswim7 protein_coding Interval_93654 chr2 75633221 75634826 + 0 NA promoter-TSS (ENSMUSG00000082152.1) processed_pseudogene-promoter-TSS (ENSMUSG00000082152.1) -641 ENSMUSG00000082152.1 ENSMUSG00000082152 ENSMUST00000119695 Gm13655 processed_pseudogene Interval_48782 chr13 103198366 103199681 + 0 NA intron (ENSMUSG00000034751.17, intron 1 of 3) protein_coding-intron (ENSMUSG00000034751.17, intron 1 of 4) -38185 ENSMUSG00000091577.2 ENSMUSG00000091577 ENSMUST00000167849 Gm6211 transcribed_processed_pseudogene Interval_90413 chr2 30299008 30300109 + 0 NA intron (ENSMUSG00000052533.14, intron 3 of 8) protein_coding-intron (ENSMUSG00000052533.14, intron 3 of 43) 13141 ENSMUSG00000052533.14 ENSMUSG00000052533 ENSMUST00000133421 Nup188 protein_coding Interval_118222 chr4 129604702 129604949 + 0 NA intron (ENSMUSG00000028797.20, intron 3 of 4) protein_coding-intron (ENSMUSG00000028797.20, intron 3 of 4) 4144 ENSMUSG00000028797.20 ENSMUSG00000028797 ENSMUST00000172635 Tmem234 protein_coding Interval_22550 chr11 11717692 11717963 + 0 NA intron (ENSMUSG00000018654.17, intron 3 of 3) protein_coding-intron (ENSMUSG00000018654.17, intron 3 of 6) -21388 ENSMUSG00000073145.6 ENSMUSG00000073145 ENSMUST00000132007 Gm12000 antisense Interval_41807 chr12 119752512 119752710 + 0 NA Intergenic Intergenic 124031 ENSMUSG00000114137.1 ENSMUSG00000114137 ENSMUST00000222158 Gm48685 unprocessed_pseudogene Interval_93634 chr2 75265417 75266106 + 0 NA intron (ENSMUSG00000100303.3, intron 4 of 5) lincRNA-intron (ENSMUSG00000100303.3, intron 3 of 5) 37464 ENSMUSG00000115959.1 ENSMUSG00000115959 ENSMUST00000229971 Gm18494 processed_pseudogene Interval_73070 chr17 34605682 34606357 + 0 NA promoter-TSS (ENSMUSG00000034254.17) protein_coding-promoter-TSS (ENSMUSG00000034254.17) -2643 ENSMUSG00000015478.13 ENSMUSG00000015478 ENSMUST00000174045 Rnf5 protein_coding Interval_144112 chr7 19473630 19474661 + 0 NA exon (ENSMUSG00000011263.16, exon 3 of 12) protein_coding-exon (ENSMUSG00000011263.16, exon 3 of 12) 5917 ENSMUSG00000109301.1 ENSMUSG00000109301 ENSMUST00000208007 Gm45167 processed_pseudogene Interval_35187 chr12 17910343 17910574 + 0 NA intron (ENSMUSG00000113642.1, intron 1 of 1) transcribed_unprocessed_pseudogene-intron (ENSMUSG00000113642.1, intron 1 of 1) 8069 ENSMUSG00000114025.1 ENSMUSG00000114025 ENSMUST00000221489 Gm49331 unprocessed_pseudogene Interval_128161 chr5 111393083 111394233 + 0 NA Intergenic Intergenic -5369 ENSMUSG00000104559.1 ENSMUSG00000104559 ENSMUST00000199149 Gm43118 antisense Interval_173833 chrX 105869601 105870258 + 0 NA intron (ENSMUSG00000031229.16, intron 4 of 5) protein_coding-intron (ENSMUSG00000031229.16, intron 9 of 34) -3895 ENSMUSG00000084575.1 ENSMUSG00000084575 ENSMUST00000122626 Gm23656 snRNA Interval_105413 chr3 86087534 86087997 + 0 NA intron (ENSMUSG00000028082.14, intron 1 of 12) protein_coding-intron (ENSMUSG00000028082.14, intron 1 of 14) 3275 ENSMUSG00000028082.14 ENSMUSG00000028082 ENSMUST00000183202 Sh3d19 protein_coding Interval_88901 chr2 12398643 12398976 + 0 NA promoter-TSS (ENSMUSG00000026767.12) protein_coding-promoter-TSS (ENSMUSG00000026767.12) -6326 ENSMUSG00000104406.1 ENSMUSG00000104406 ENSMUST00000193349 Gm38014 TEC Interval_154523 chr8 18924218 18925011 + 0 NA Intergenic Intergenic -8375 ENSMUSG00000088420.1 ENSMUSG00000088420 ENSMUST00000157795 Gm22551 snoRNA Interval_43032 chr13 23354446 23354801 + 0 NA exon (ENSMUSG00000046351.11, exon 4 of 4) protein_coding-exon (ENSMUSG00000046351.11, exon 4 of 4) 8587 ENSMUSG00000046351.11 ENSMUSG00000046351 ENSMUST00000223795 Zfp322a protein_coding Interval_397 chr1 4877261 4877650 + 0 NA intron (ENSMUSG00000033813.15, intron 2 of 9) protein_coding-intron (ENSMUSG00000033813.15, intron 2 of 9) 3196 ENSMUSG00000062588.4 ENSMUSG00000062588 ENSMUST00000078030 Gm6104 processed_pseudogene Interval_16999 chr10 70349072 70350085 + 0 NA Intergenic Intergenic 11276 ENSMUSG00000112676.1 ENSMUSG00000112676 ENSMUST00000219977 Gm20108 processed_pseudogene Interval_174179 chrX 137426751 137427380 + 0 NA Intergenic Intergenic -143954 ENSMUSG00000059203.10 ENSMUSG00000059203 ENSMUST00000075471 Il1rapl2 protein_coding Interval_138817 chr6 92173401 92173633 + 0 NA TTS (ENSMUSG00000005893.14) protein_coding-TTS (ENSMUSG00000005893.14) 10516 ENSMUSG00000014551.8 ENSMUSG00000014551 ENSMUST00000134132 Mrps25 protein_coding Interval_14180 chr10 28382446 28382701 + 0 NA intron (ENSMUSG00000019889.10, intron 6 of 14) protein_coding-intron (ENSMUSG00000019889.10, intron 6 of 31) -168452 ENSMUSG00000076377.1 ENSMUSG00000076377 ENSMUST00000102422 Gm22370 miRNA Interval_170343 chr9 107298683 107299285 + 0 NA promoter-TSS (ENSMUSG00000032578.7) protein_coding-promoter-TSS (ENSMUSG00000032578.7) -171 ENSMUSG00000032578.7 ENSMUSG00000032578 ENSMUST00000171568 Cish protein_coding Interval_68660 chr16 83974302 83974834 + 0 NA Intergenic Intergenic 82816 ENSMUSG00000116745.1 ENSMUSG00000116745 ENSMUST00000231610 Gm41481 lincRNA Interval_36241 chr12 40199403 40201231 + 0 NA promoter-TSS (ENSMUSG00000071342.5) protein_coding-promoter-TSS (ENSMUSG00000071342.5) -827 ENSMUSG00000071342.5 ENSMUSG00000071342 ENSMUST00000095760 Lsmem1 protein_coding Interval_69026 chr16 90191696 90192013 + 0 NA Intergenic Intergenic -6294 ENSMUSG00000116829.1 ENSMUSG00000116829 ENSMUST00000231225 Gm49704 processed_pseudogene Interval_18366 chr10 85271621 85272775 + 0 NA Intergenic Intergenic -5876 ENSMUSG00000111752.1 ENSMUSG00000111752 ENSMUST00000213881 Gm38575 processed_transcript Interval_135135 chr6 36387855 36389820 + 0 NA promoter-TSS (ENSMUSG00000073154.10) lincRNA-promoter-TSS (ENSMUSG00000073154.10) 753 ENSMUSG00000045613.9 ENSMUSG00000045613 ENSMUST00000169004 Chrm2 protein_coding Interval_39920 chr12 99772713 99773286 + 0 NA intron (ENSMUSG00000021176.6, intron 6 of 6) protein_coding-intron (ENSMUSG00000021176.6, intron 5 of 5) -10745 ENSMUSG00000113877.1 ENSMUSG00000113877 ENSMUST00000220762 Gm47208 TEC Interval_92195 chr2 55921366 55921574 + 0 NA Intergenic Intergenic 51524 ENSMUSG00000082499.1 ENSMUSG00000082499 ENSMUST00000120242 Gm13615 processed_pseudogene Interval_98689 chr2 154319544 154320520 + 0 NA intron (ENSMUSG00000067996.5, intron 14 of 14) protein_coding-intron (ENSMUSG00000067996.5, intron 14 of 14) 12805 ENSMUSG00000067996.5 ENSMUSG00000067996 ENSMUST00000088921 Bpifb9b protein_coding Interval_131699 chr5 139371691 139372804 + 0 NA intron (ENSMUSG00000053553.11, intron 2 of 3) protein_coding-intron (ENSMUSG00000053553.11, intron 2 of 4) -2502 ENSMUSG00000065593.1 ENSMUSG00000065593 ENSMUST00000083659 Mir339 miRNA Interval_80932 chr18 50410377 50410801 + 0 NA Intergenic Intergenic 132220 ENSMUSG00000035420.7 ENSMUSG00000035420 ENSMUST00000238078 Fam170a protein_coding Interval_149717 chr7 100902683 100903162 + 0 NA intron (ENSMUSG00000032875.8, intron 1 of 20) protein_coding-intron (ENSMUSG00000032875.8, intron 1 of 20) -8232 ENSMUSG00000032875.8 ENSMUSG00000032875 ENSMUST00000208735 Arhgef17 protein_coding Interval_70944 chr17 16543874 16544322 + 0 NA Intergenic Intergenic -13148 ENSMUSG00000116757.1 ENSMUSG00000116757 ENSMUST00000231695 Gm4786 processed_pseudogene Interval_18840 chr10 91202681 91202899 + 0 NA Intergenic Intergenic 17829 ENSMUSG00000111544.1 ENSMUSG00000111544 ENSMUST00000216451 4930534H03Rik lincRNA Interval_3172 chr1 54433330 54433642 + 0 NA intron (ENSMUSG00000041303.7, intron 3 of 17) protein_coding-intron (ENSMUSG00000041303.7, intron 3 of 17) -9432 ENSMUSG00000041303.7 ENSMUSG00000041303 ENSMUST00000189906 Gtf3c3 protein_coding Interval_97308 chr2 133552008 133553408 + 0 NA exon (ENSMUSG00000027358.6, exon 1 of 3) protein_coding-exon (ENSMUSG00000027358.6, exon 1 of 3) 549 ENSMUSG00000027358.6 ENSMUSG00000027358 ENSMUST00000028836 Bmp2 protein_coding Interval_35667 chr12 27155120 27155318 + 0 NA intron (ENSMUSG00000094002.3, intron 1 of 3) lincRNA-intron (ENSMUSG00000094002.3, intron 1 of 1) 5284 ENSMUSG00000094002.3 ENSMUSG00000094002 ENSMUST00000183238 Gm9866 lincRNA Interval_22570 chr11 11844016 11844900 + 0 NA TTS (ENSMUSG00000020182.16) protein_coding-TTS (ENSMUSG00000020182.16) -23665 ENSMUSG00000086391.1 ENSMUSG00000086391 ENSMUST00000151032 1700042O10Rik antisense Interval_63396 chr15 100800244 100801553 + 0 NA intron (ENSMUSG00000023032.12, intron 15 of 23) protein_coding-intron (ENSMUSG00000023032.12, intron 16 of 24) -1850 ENSMUSG00000023032.12 ENSMUSG00000023032 ENSMUST00000162744 Slc4a8 protein_coding Interval_27883 chr11 70614763 70615984 + 0 NA promoter-TSS (ENSMUSG00000087279.10) protein_coding-promoter-TSS (ENSMUSG00000087279.10) 300 ENSMUSG00000014609.16 ENSMUSG00000014609 ENSMUST00000134836 Chrne protein_coding Interval_16110 chr10 60794564 60795420 + 0 NA intron (ENSMUSG00000020099.8, intron 1 of 15) protein_coding-intron (ENSMUSG00000020099.8, intron 1 of 16) 19331 ENSMUSG00000112592.1 ENSMUSG00000112592 ENSMUST00000218180 Gm19972 TEC Interval_170827 chr9 111010134 111010698 + 0 NA Intergenic Intergenic -13970 ENSMUSG00000032496.7 ENSMUSG00000032496 ENSMUST00000197575 Ltf protein_coding Interval_61823 chr15 84420400 84420622 + 0 NA intron (ENSMUSG00000062760.11, intron 1 of 4) protein_coding-intron (ENSMUSG00000062760.11, intron 1 of 4) 26586 ENSMUSG00000062760.11 ENSMUSG00000062760 ENSMUST00000186527 Shisal1 protein_coding Interval_153672 chr8 4435151 4437178 + 0 NA Intergenic Intergenic -29425 ENSMUSG00000108860.1 ENSMUSG00000108860 ENSMUST00000207275 Gm6070 processed_pseudogene Interval_109006 chr3 134739673 134740126 + 0 NA Intergenic Intergenic -89108 ENSMUSG00000028172.5 ENSMUSG00000028172 ENSMUST00000029822 Tacr3 protein_coding Interval_112790 chr4 45018316 45019275 + 0 NA promoter-TSS (ENSMUSG00000028318.14) protein_coding-promoter-TSS (ENSMUSG00000028318.14) -6383 ENSMUSG00000049657.9 ENSMUSG00000049657 ENSMUST00000131991 Zbtb5 protein_coding Interval_40446 chr12 104932078 104934425 + 0 NA intron (ENSMUSG00000054150.12, intron 17 of 17) protein_coding-intron (ENSMUSG00000054150.12, intron 16 of 16) -6562 ENSMUSG00000100975.2 ENSMUSG00000100975 ENSMUST00000185486 Gm28875 lincRNA Interval_97004 chr2 130423610 130424973 + 0 NA promoter-TSS (ENSMUSG00000027411.17) protein_coding-promoter-TSS (ENSMUSG00000027411.17) -25 ENSMUSG00000037773.14 ENSMUSG00000037773 ENSMUST00000142536 Pced1a protein_coding Interval_74219 chr17 47526944 47527741 + 0 NA intron (ENSMUSG00000034165.16, intron 1 of 6) protein_coding-intron (ENSMUSG00000034165.16, intron 1 of 6) -25070 ENSMUSG00000023980.7 ENSMUSG00000023980 ENSMUST00000233675 Taf8 protein_coding Interval_44514 chr13 45570193 45570493 + 0 NA intron (ENSMUSG00000046876.16, intron 5 of 6) protein_coding-intron (ENSMUSG00000046876.16, intron 6 of 7) 24190 ENSMUSG00000000253.13 ENSMUSG00000000253 ENSMUST00000222227 Gmpr protein_coding Interval_63307 chr15 100231675 100232243 + 0 NA promoter-TSS (ENSMUSG00000023027.13) protein_coding-promoter-TSS (ENSMUSG00000023027.13) -239 ENSMUSG00000023027.13 ENSMUSG00000023027 ENSMUST00000166435 Atf1 protein_coding Interval_61742 chr15 83733099 83733314 + 0 NA Intergenic Intergenic -58808 ENSMUSG00000041708.12 ENSMUSG00000041708 ENSMUST00000148868 Mpped1 protein_coding Interval_116663 chr4 116463241 116464826 + 0 NA promoter-TSS (ENSMUSG00000003810.13) protein_coding-promoter-TSS (ENSMUSG00000003810.13) 15245 ENSMUSG00000082592.1 ENSMUSG00000082592 ENSMUST00000121683 Gm12950 processed_pseudogene Interval_107258 chr3 105018608 105018964 + 0 NA intron (ENSMUSG00000062127.11, intron 3 of 4) protein_coding-intron (ENSMUSG00000062127.11, intron 3 of 5) 24754 ENSMUSG00000105355.1 ENSMUSG00000105355 ENSMUST00000198827 Gm40117 antisense Interval_119634 chr4 138868539 138868837 + 0 NA Intergenic Intergenic 5276 ENSMUSG00000078518.1 ENSMUSG00000078518 ENSMUST00000105805 Gm13030 protein_coding Interval_87559 chr19 53437420 53439015 + 0 NA Intergenic Intergenic -22405 ENSMUSG00000097779.2 ENSMUSG00000097779 ENSMUST00000180442 4833407H14Rik lincRNA Interval_126488 chr5 88920555 88920886 + 0 NA intron (ENSMUSG00000060961.16, intron 1 of 25) protein_coding-intron (ENSMUSG00000060961.16, intron 1 of 24) 34234 ENSMUSG00000060961.16 ENSMUSG00000060961 ENSMUST00000134303 Slc4a4 protein_coding Interval_37712 chr12 71317170 71318885 + 0 NA exon (ENSMUSG00000044548.11, exon 4 of 4) protein_coding-exon (ENSMUSG00000044548.11, exon 4 of 4) 3633 ENSMUSG00000087109.1 ENSMUSG00000087109 ENSMUST00000132822 4930474H06Rik processed_transcript Interval_84608 chr19 14388674 14388997 + 0 NA Intergenic Intergenic 206704 ENSMUSG00000024642.17 ENSMUSG00000024642 ENSMUST00000235975 Tle4 protein_coding Interval_23496 chr11 22956771 22958192 + 0 NA promoter-TSS (ENSMUSG00000051355.18) protein_coding-promoter-TSS (ENSMUSG00000051355.18) 15378 ENSMUSG00000051355.18 ENSMUSG00000051355 ENSMUST00000093270 Commd1 protein_coding Interval_167029 chr9 64667565 64668547 + 0 NA intron (ENSMUSG00000036466.17, intron 10 of 24) protein_coding-intron (ENSMUSG00000036466.17, intron 10 of 24) 57664 ENSMUSG00000004771.12 ENSMUSG00000004771 ENSMUST00000165083 Rab11a protein_coding Interval_14991 chr10 41751435 41752527 + 0 NA intron (ENSMUSG00000102114.2, intron 1 of 3) protein_coding-intron (ENSMUSG00000019813.16, intron 1 of 10) 5260 ENSMUSG00000102114.2 ENSMUSG00000102114 ENSMUST00000190793 BC048559 antisense Interval_41410 chr12 113489540 113489751 + 0 NA exon (ENSMUSG00000051804.3, exon 1 of 1) protein_coding-exon (ENSMUSG00000051804.3, exon 1 of 1) 134 ENSMUSG00000051804.3 ENSMUSG00000051804 ENSMUST00000063317 Adam6b protein_coding Interval_125004 chr5 63727097 63727473 + 0 NA intron (ENSMUSG00000090061.9, intron 3 of 6) protein_coding-intron (ENSMUSG00000090061.9, intron 2 of 6) 33231 ENSMUSG00000090138.2 ENSMUSG00000090138 ENSMUST00000161710 Gm3687 processed_pseudogene Interval_26694 chr11 59769845 59770049 + 0 NA exon (ENSMUSG00000005417.17, exon 21 of 23) protein_coding-exon (ENSMUSG00000005417.17, exon 21 of 23) 9199 ENSMUSG00000005417.17 ENSMUSG00000005417 ENSMUST00000156111 Mprip protein_coding Interval_27881 chr11 70605018 70605622 + 0 NA TTS (ENSMUSG00000020827.18) protein_coding-TTS (ENSMUSG00000020827.18) 1120 ENSMUSG00000020827.18 ENSMUSG00000020827 ENSMUST00000132208 Mink1 protein_coding Interval_123884 chr5 36291175 36291595 + 0 NA intron (ENSMUSG00000029093.14, intron 1 of 7) protein_coding-intron (ENSMUSG00000029093.14, intron 1 of 26) -10185 ENSMUSG00000098884.1 ENSMUSG00000098884 ENSMUST00000184943 Mir7689 miRNA Interval_162559 chr9 4309049 4310437 + 0 NA promoter-TSS (ENSMUSG00000025893.8) protein_coding-promoter-TSS (ENSMUSG00000025893.8) -92 ENSMUSG00000025893.8 ENSMUSG00000025893 ENSMUST00000212221 Kbtbd3 protein_coding Interval_58909 chr15 39915752 39915954 + 0 NA intron (ENSMUSG00000022305.13, intron 1 of 1) protein_coding-intron (ENSMUSG00000022305.13, intron 1 of 6) 27837 ENSMUSG00000022305.13 ENSMUSG00000022305 ENSMUST00000146714 Lrp12 protein_coding Interval_27461 chr11 67996123 67996431 + 0 NA intron (ENSMUSG00000020903.13, intron 4 of 7) protein_coding-intron (ENSMUSG00000020903.13, intron 4 of 7) 29785 ENSMUSG00000020903.13 ENSMUSG00000020903 ENSMUST00000142649 Stx8 protein_coding Interval_18593 chr10 88294121 88294331 + 0 NA Intergenic Intergenic 15906 ENSMUSG00000112715.1 ENSMUSG00000112715 ENSMUST00000218701 Gm48476 processed_pseudogene Interval_2943 chr1 51429753 51430085 + 0 NA Intergenic Intergenic 29012 ENSMUSG00000101702.1 ENSMUSG00000101702 ENSMUST00000189460 1700072G22Rik lincRNA Interval_1474 chr1 23921605 23922694 + 0 NA exon (ENSMUSG00000026155.13, exon 1 of 10) protein_coding-exon (ENSMUSG00000026155.13, exon 1 of 10) -12413 ENSMUSG00000026155.13 ENSMUSG00000026155 ENSMUST00000133398 Smap1 protein_coding Interval_81034 chr18 53187303 53188430 + 0 NA intron (ENSMUSG00000034484.8, intron 1 of 6) protein_coding-intron (ENSMUSG00000034484.8, intron 1 of 14) 11477 ENSMUSG00000034484.8 ENSMUSG00000034484 ENSMUST00000236111 Snx2 protein_coding Interval_68208 chr16 68209532 68210534 + 0 NA Intergenic Intergenic -45178 ENSMUSG00000116638.1 ENSMUSG00000116638 ENSMUST00000232077 Gm49650 processed_pseudogene Interval_69027 chr16 90197264 90198186 + 0 NA promoter-TSS (ENSMUSG00000116829.1) processed_pseudogene-promoter-TSS (ENSMUSG00000116829.1) -423 ENSMUSG00000116829.1 ENSMUSG00000116829 ENSMUST00000231225 Gm49704 processed_pseudogene Interval_10164 chr1 166282356 166283191 + 0 NA intron (ENSMUSG00000040612.13, intron 3 of 3) protein_coding-intron (ENSMUSG00000040612.13, intron 3 of 9) 26812 ENSMUSG00000091393.1 ENSMUSG00000091393 ENSMUST00000168347 5330438I03Rik antisense Interval_38042 chr12 74807561 74810186 + 0 NA Intergenic Intergenic -16472 ENSMUSG00000113845.1 ENSMUSG00000113845 ENSMUST00000223498 Gm39473 lincRNA Interval_118318 chr4 130266332 130267680 + 0 NA intron (ENSMUSG00000023232.17, intron 2 of 10) protein_coding-intron (ENSMUSG00000023232.17, intron 1 of 9) 8539 ENSMUSG00000023232.17 ENSMUSG00000023232 ENSMUST00000154846 Serinc2 protein_coding Interval_86733 chr19 43484249 43485666 + 0 NA exon (ENSMUSG00000025189.9, exon 7 of 11) protein_coding-exon (ENSMUSG00000025189.9, exon 7 of 11) 13283 ENSMUSG00000025189.9 ENSMUSG00000025189 ENSMUST00000225191 Cnnm1 protein_coding Interval_167937 chr9 74753883 74754067 + 0 NA Intergenic Intergenic -28095 ENSMUSG00000088635.1 ENSMUSG00000088635 ENSMUST00000158010 Gm22315 snoRNA Interval_104482 chr3 66410772 66411224 + 0 NA Intergenic Intergenic 46459 ENSMUSG00000117623.1 ENSMUSG00000117623 ENSMUST00000234873 Gm50014 unitary_pseudogene Interval_165920 chr9 54675496 54677738 + 0 NA Intergenic Intergenic 14885 ENSMUSG00000110867.1 ENSMUSG00000110867 ENSMUST00000213307 Gm7368 processed_pseudogene Interval_25370 chr11 46808656 46809559 + 0 NA Intergenic Intergenic -1693 ENSMUSG00000055546.6 ENSMUSG00000055546 ENSMUST00000068877 Timd4 protein_coding Interval_133570 chr6 6884918 6885405 + 0 NA Intergenic Intergenic -3079 ENSMUSG00000029755.10 ENSMUSG00000029755 ENSMUST00000204014 Dlx5 protein_coding Interval_171936 chr9 122735205 122735422 + 0 NA Intergenic Intergenic -15290 ENSMUSG00000094985.2 ENSMUSG00000094985 ENSMUST00000213519 Topaz1 protein_coding Interval_93449 chr2 73142897 73143197 + 0 NA intron (ENSMUSG00000027108.15, intron 4 of 9) protein_coding-intron (ENSMUSG00000027108.15, intron 5 of 10) 11302 ENSMUSG00000083569.1 ENSMUSG00000083569 ENSMUST00000120032 Gm13666 processed_pseudogene Interval_10941 chr1 177353136 177353469 + 0 NA Intergenic Intergenic 75782 ENSMUSG00000097892.2 ENSMUSG00000097892 ENSMUST00000180591 Gm26801 antisense Interval_9637 chr1 160561211 160561867 + 0 NA intron (ENSMUSG00000026721.16, intron 13 of 20) protein_coding-intron (ENSMUSG00000026721.16, intron 13 of 20) 12271 ENSMUSG00000104026.1 ENSMUSG00000104026 ENSMUST00000192582 Gm37212 TEC Interval_81992 chr18 66970845 66971054 + 0 NA Intergenic Intergenic -3216 ENSMUSG00000117798.1 ENSMUSG00000117798 ENSMUST00000237275 Gm50164 lincRNA Interval_129116 chr5 117500502 117500788 + 0 NA intron (ENSMUSG00000061578.8, intron 1 of 20) protein_coding-intron (ENSMUSG00000061578.8, intron 1 of 3) -20054 ENSMUSG00000107199.1 ENSMUSG00000107199 ENSMUST00000201553 Gm42550 TEC Interval_141525 chr6 128877996 128878704 + 0 NA intron (ENSMUSG00000090164.8, intron 2 of 2) protein_coding-intron (ENSMUSG00000090164.8, intron 2 of 2) -5502 ENSMUSG00000107733.1 ENSMUSG00000107733 ENSMUST00000203621 Gm8774 processed_pseudogene Interval_139251 chr6 97565188 97565403 + 0 NA intron (ENSMUSG00000030064.16, intron 1 of 7) protein_coding-intron (ENSMUSG00000030064.16, intron 1 of 23) 6943 ENSMUSG00000065017.1 ENSMUSG00000065017 ENSMUST00000083083 Gm23510 snRNA Interval_161845 chr8 123144945 123145470 + 0 NA TTS (ENSMUSG00000000739.14) protein_coding-TTS (ENSMUSG00000000739.14) 13108 ENSMUSG00000000739.14 ENSMUSG00000000739 ENSMUST00000152722 Sult5a1 protein_coding Interval_84489 chr19 11806827 11808350 + 0 NA intron (ENSMUSG00000041488.16, intron 1 of 10) protein_coding-intron (ENSMUSG00000041488.16, intron 1 of 11) 11305 ENSMUSG00000041488.16 ENSMUSG00000041488 ENSMUST00000209304 Stx3 protein_coding Interval_14047 chr10 26039269 26040006 + 0 NA intron (ENSMUSG00000049420.9, intron 1 of 2) protein_coding-intron (ENSMUSG00000049420.9, intron 1 of 1) 38570 ENSMUSG00000049420.9 ENSMUSG00000049420 ENSMUST00000219872 Tmem200a protein_coding Interval_113237 chr4 51463235 51463887 + 0 NA Intergenic Intergenic -77186 ENSMUSG00000087958.1 ENSMUSG00000087958 ENSMUST00000157333 Gm22563 misc_RNA Interval_28172 chr11 73448099 73448277 + 0 NA Intergenic Intergenic 9320 ENSMUSG00000072709.3 ENSMUSG00000072709 ENSMUST00000075532 Olfr380 protein_coding Interval_60006 chr15 63740677 63741636 + 0 NA intron (ENSMUSG00000115711.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000115711.1, intron 1 of 2) 472 ENSMUSG00000115711.1 ENSMUSG00000115711 ENSMUST00000228483 Gm41336 lincRNA Interval_12802 chr10 5608285 5608685 + 0 NA Intergenic Intergenic 14710 ENSMUSG00000046916.9 ENSMUSG00000046916 ENSMUST00000051809 Myct1 protein_coding Interval_103401 chr3 41276345 41276707 + 0 NA Intergenic Intergenic 14064 ENSMUSG00000106000.1 ENSMUSG00000106000 ENSMUST00000197066 Gm16508 lincRNA Interval_140137 chr6 114724032 114725151 + 0 NA intron (ENSMUSG00000030314.16, intron 1 of 3) protein_coding-intron (ENSMUSG00000030314.16, intron 16 of 18) -13943 ENSMUSG00000107411.1 ENSMUSG00000107411 ENSMUST00000203280 Gm19040 processed_pseudogene Interval_67587 chr16 51589837 51590453 + 0 NA Intergenic Intergenic -173197 ENSMUSG00000116855.1 ENSMUSG00000116855 ENSMUST00000232313 Gm49608 processed_pseudogene Interval_48423 chr13 98921391 98921980 + 0 NA intron (ENSMUSG00000009470.17, intron 1 of 6) protein_coding-intron (ENSMUSG00000009470.17, intron 1 of 23) 17461 ENSMUSG00000062461.7 ENSMUSG00000062461 ENSMUST00000080866 Rpl27a-ps4 processed_pseudogene Interval_73189 chr17 35489487 35491167 + 0 NA Intergenic Intergenic -18494 ENSMUSG00000024406.16 ENSMUSG00000024406 ENSMUST00000174782 Pou5f1 protein_coding Interval_126071 chr5 77223053 77224840 + 0 NA Intergenic Intergenic -3432 ENSMUSG00000107034.1 ENSMUSG00000107034 ENSMUST00000201959 Gm19060 processed_pseudogene Interval_98150 chr2 148781550 148782637 + 0 NA promoter-TSS (ENSMUSG00000027444.2) protein_coding-promoter-TSS (ENSMUSG00000027444.2) 84 ENSMUSG00000027444.2 ENSMUSG00000027444 ENSMUST00000028933 Cstdc1 protein_coding Interval_143332 chr7 5472536 5473059 + 0 NA Intergenic Intergenic -17057 ENSMUSG00000117744.1 ENSMUSG00000117744 ENSMUST00000074132 Vmn1r59 protein_coding Interval_82042 chr18 67321972 67325066 + 0 NA intron (ENSMUSG00000046415.11, intron 3 of 3) processed_transcript-intron (ENSMUSG00000046415.11, intron 3 of 4) 14930 ENSMUSG00000024525.7 ENSMUSG00000024525 ENSMUST00000237149 Impa2 protein_coding Interval_120346 chr4 148040712 148041675 + 0 NA promoter-TSS (ENSMUSG00000029009.17) protein_coding-promoter-TSS (ENSMUSG00000029009.17) -2372 ENSMUSG00000029016.13 ENSMUSG00000029016 ENSMUST00000131232 Clcn6 protein_coding Interval_113476 chr4 55276368 55277278 + 0 NA intron (ENSMUSG00000087614.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000087614.1, intron 1 of 2) 2656 ENSMUSG00000087614.1 ENSMUSG00000087614 ENSMUST00000142782 Gm12514 lincRNA Interval_120622 chr4 149737215 149738439 + 0 NA promoter-TSS (ENSMUSG00000044700.15) protein_coding-promoter-TSS (ENSMUSG00000044700.15) -57 ENSMUSG00000044700.15 ENSMUSG00000044700 ENSMUST00000145405 Tmem201 protein_coding Interval_9187 chr1 154884447 154885514 + 0 NA promoter-TSS (ENSMUSG00000004110.17) protein_coding-promoter-TSS (ENSMUSG00000004110.17) -68039 ENSMUSG00000004110.17 ENSMUSG00000004110 ENSMUST00000186256 Cacna1e protein_coding Interval_102115 chr3 17856701 17857221 + 0 NA Intergenic Intergenic -53214 ENSMUSG00000087893.1 ENSMUSG00000087893 ENSMUST00000157268 Gm23441 snRNA Interval_62060 chr15 86156668 86156932 + 0 NA intron (ENSMUSG00000035891.16, intron 1 of 9) protein_coding-intron (ENSMUSG00000035891.16, intron 4 of 12) -4352 ENSMUSG00000035891.16 ENSMUSG00000035891 ENSMUST00000156546 Cerk protein_coding Interval_163317 chr9 20824732 20825758 + 0 NA exon (ENSMUSG00000053773.5, exon 5 of 6) protein_coding-exon (ENSMUSG00000053773.5, exon 5 of 6) 6742 ENSMUSG00000053773.5 ENSMUSG00000053773 ENSMUST00000066387 Rdh8 protein_coding Interval_116186 chr4 108492023 108493088 + 0 NA intron (ENSMUSG00000034610.14, intron 3 of 15) protein_coding-intron (ENSMUSG00000034610.14, intron 5 of 30) -5489 ENSMUSG00000065299.1 ENSMUSG00000065299 ENSMUST00000083365 Gm23138 snRNA Interval_86766 chr19 43724851 43725396 + 0 NA intron (ENSMUSG00000025192.13, intron 9 of 12) protein_coding-intron (ENSMUSG00000025192.13, intron 9 of 12) 14979 ENSMUSG00000040018.9 ENSMUSG00000040018 ENSMUST00000129242 Cox15 protein_coding Interval_5986 chr1 93731301 93732479 + 0 NA promoter-TSS (ENSMUSG00000026279.14) protein_coding-promoter-TSS (ENSMUSG00000026279.14) 786 ENSMUSG00000101952.1 ENSMUSG00000101952 ENSMUST00000188846 Gm10550 antisense Interval_101173 chr2 178830985 178832088 + 0 NA Intergenic Intergenic 189597 ENSMUSG00000082215.3 ENSMUSG00000082215 ENSMUST00000118225 Gm14314 processed_pseudogene Interval_91072 chr2 34818678 34818876 + 0 NA intron (ENSMUSG00000035949.15, intron 3 of 3) protein_coding-intron (ENSMUSG00000035949.15, intron 2 of 6) 7430 ENSMUSG00000035949.15 ENSMUSG00000035949 ENSMUST00000126051 Fbxw2 protein_coding Interval_64575 chr16 13423722 13424072 + 0 NA intron (ENSMUSG00000087526.2, intron 3 of 7) antisense-intron (ENSMUSG00000087526.2, intron 1 of 3) -25626 ENSMUSG00000076972.2 ENSMUSG00000076972 ENSMUST00000103784 Mir193b miRNA Interval_136634 chr6 56850275 56850719 + 0 NA intron (ENSMUSG00000029781.7, intron 1 of 1) protein_coding-intron (ENSMUSG00000029781.7, intron 2 of 9) 1164 ENSMUSG00000029781.7 ENSMUSG00000029781 ENSMUST00000147159 Fkbp9 protein_coding Interval_38771 chr12 82196643 82197195 + 0 NA intron (ENSMUSG00000042700.16, intron 2 of 3) protein_coding-intron (ENSMUSG00000042700.16, intron 1 of 22) 27443 ENSMUSG00000042700.16 ENSMUSG00000042700 ENSMUST00000221327 Sipa1l1 protein_coding Interval_71540 chr17 24445229 24445433 + 0 NA promoter-TSS (ENSMUSG00000024137.9) protein_coding-promoter-TSS (ENSMUSG00000024137.9) -2630 ENSMUSG00000024136.14 ENSMUSG00000024136 ENSMUST00000148820 Dnase1l2 protein_coding Interval_71773 chr17 25998516 25998762 + 0 NA intron (ENSMUSG00000037098.18, intron 5 of 11) protein_coding-intron (ENSMUSG00000037098.18, intron 5 of 11) 12573 ENSMUSG00000097523.2 ENSMUSG00000097523 ENSMUST00000235528 1700022N22Rik antisense Interval_1238 chr1 17921967 17922746 + 0 NA Intergenic Intergenic -24685 ENSMUSG00000100554.1 ENSMUSG00000100554 ENSMUST00000190885 Gm7690 processed_pseudogene Interval_59337 chr15 51769288 51769648 + 0 NA Intergenic Intergenic 66789 ENSMUSG00000022312.11 ENSMUSG00000022312 ENSMUST00000228583 Eif3h protein_coding Interval_173316 chrX 78403137 78403816 + 0 NA Intergenic Intergenic -2200 ENSMUSG00000081881.1 ENSMUSG00000081881 ENSMUST00000120719 Gm14752 processed_pseudogene Interval_135981 chr6 49227316 49228553 + 0 NA Intergenic Intergenic -26917 ENSMUSG00000107962.1 ENSMUSG00000107962 ENSMUST00000204899 Gm43980 TEC Interval_173590 chrX 100409232 100409802 + 0 NA intron (ENSMUSG00000031220.14, intron 2 of 7) protein_coding-intron (ENSMUSG00000031220.14, intron 1 of 6) -19496 ENSMUSG00000051582.2 ENSMUSG00000051582 ENSMUST00000060241 Otud6a protein_coding Interval_68842 chr16 87515564 87517513 + 0 NA Intergenic Intergenic 11627 ENSMUSG00000077579.1 ENSMUSG00000077579 ENSMUST00000104391 Gm24891 snoRNA Interval_122563 chr5 23818699 23819074 + 0 NA intron (ENSMUSG00000028999.15, intron 13 of 13) protein_coding-intron (ENSMUSG00000028999.15, intron 14 of 14) 4692 ENSMUSG00000118636.1 ENSMUSG00000118636 ENSMUST00000239171 AC117663.3 transcribed_unitary_pseudogene Interval_12171 chr1 190480771 190481715 + 0 NA Intergenic Intergenic 1773 ENSMUSG00000106474.1 ENSMUSG00000106474 ENSMUST00000198711 Gm47294 miRNA Interval_166435 chr9 59455453 59456172 + 0 NA intron (ENSMUSG00000025234.11, intron 1 of 13) protein_coding-intron (ENSMUSG00000025234.11, intron 1 of 11) 16421 ENSMUSG00000090516.1 ENSMUSG00000090516 ENSMUST00000171632 Rps11-ps1 processed_pseudogene Interval_10961 chr1 177604358 177604583 + 0 NA Intergenic Intergenic -9948 ENSMUSG00000102885.1 ENSMUSG00000102885 ENSMUST00000194583 Gm37280 lincRNA Interval_154309 chr8 14275999 14276808 + 0 NA intron (ENSMUSG00000047495.15, intron 2 of 14) protein_coding-intron (ENSMUSG00000047495.15, intron 2 of 14) -3092 ENSMUSG00000088311.1 ENSMUSG00000088311 ENSMUST00000157686 Gm26184 snoRNA Interval_121084 chr4 152755475 152755967 + 0 NA Intergenic Intergenic 58181 ENSMUSG00000073699.3 ENSMUSG00000073699 ENSMUST00000143133 Gm833 lincRNA Interval_114680 chr4 83714748 83714982 + 0 NA intron (ENSMUSG00000052407.17, intron 21 of 25) protein_coding-intron (ENSMUSG00000052407.17, intron 21 of 25) 13781 ENSMUSG00000080793.1 ENSMUSG00000080793 ENSMUST00000118595 Cbx3-ps3 processed_pseudogene Interval_162540 chr9 4032724 4033190 + 0 NA Intergenic Intergenic -180965 ENSMUSG00000110691.1 ENSMUSG00000110691 ENSMUST00000211927 Gm5363 processed_pseudogene Interval_169669 chr9 100070968 100071188 + 0 NA Intergenic Intergenic 47430 ENSMUSG00000101584.2 ENSMUSG00000101584 ENSMUST00000215896 4930519F24Rik lincRNA Interval_109897 chr3 150177924 150178124 + 0 NA Intergenic Intergenic -104482 ENSMUSG00000047676.6 ENSMUSG00000047676 ENSMUST00000057740 Rpsa-ps10 processed_pseudogene Interval_116006 chr4 106938696 106940155 + 0 NA intron (ENSMUSG00000061887.14, intron 1 of 4) protein_coding-intron (ENSMUSG00000061887.14, intron 4 of 17) 83074 ENSMUSG00000085581.1 ENSMUSG00000085581 ENSMUST00000129617 Gm12786 antisense Interval_59754 chr15 59048709 59048916 + 0 NA intron (ENSMUSG00000022353.10, intron 3 of 14) protein_coding-intron (ENSMUSG00000022353.10, intron 3 of 14) 33193 ENSMUSG00000022353.10 ENSMUSG00000022353 ENSMUST00000227797 Mtss1 protein_coding Interval_133317 chr5 151650641 151651528 + 0 NA exon (ENSMUSG00000033970.15, exon 1 of 9) protein_coding-exon (ENSMUSG00000033970.15, exon 1 of 9) -6322 ENSMUSG00000033970.15 ENSMUSG00000033970 ENSMUST00000136752 Rfc3 protein_coding Interval_133181 chr5 150384716 150385778 + 0 NA intron (ENSMUSG00000056602.12, intron 17 of 60) protein_coding-intron (ENSMUSG00000056602.12, intron 17 of 60) 57057 ENSMUSG00000118543.1 ENSMUSG00000118543 ENSMUST00000239092 AC154885.1 unprocessed_pseudogene Interval_77320 chr17 87993953 87994961 + 0 NA intron (ENSMUSG00000005371.15, intron 18 of 22) protein_coding-intron (ENSMUSG00000005371.15, intron 18 of 22) 19362 ENSMUSG00000005370.4 ENSMUSG00000005370 ENSMUST00000234756 Msh6 protein_coding Interval_94807 chr2 94502614 94502946 + 0 NA Intergenic Intergenic 35289 ENSMUSG00000106196.1 ENSMUSG00000106196 ENSMUST00000116740 Gm44461 miRNA Interval_68861 chr16 87665223 87666188 + 0 NA Intergenic Intergenic -33299 ENSMUSG00000025612.5 ENSMUSG00000025612 ENSMUST00000156958 Bach1 protein_coding Interval_157883 chr8 75199066 75200373 + 0 NA Intergenic Intergenic -1720 ENSMUSG00000110640.1 ENSMUSG00000110640 ENSMUST00000212891 Gm45903 lincRNA Interval_104772 chr3 72723370 72723555 + 0 NA Intergenic Intergenic 14519 ENSMUSG00000084752.1 ENSMUSG00000084752 ENSMUST00000122803 Gm22451 snRNA Interval_15384 chr10 45292023 45292489 + 0 NA intron (ENSMUSG00000019848.14, intron 1 of 3) protein_coding-intron (ENSMUSG00000019848.14, intron 1 of 3) -2832 ENSMUSG00000090088.1 ENSMUSG00000090088 ENSMUST00000162062 Gm15934 antisense Interval_124003 chr5 37100462 37100953 + 0 NA exon (ENSMUSG00000063646.18, exon 4 of 13) protein_coding-exon (ENSMUSG00000063646.18, exon 4 of 13) -8347 ENSMUSG00000088707.1 ENSMUSG00000088707 ENSMUST00000158082 Gm25551 rRNA Interval_101767 chr3 9475449 9475720 + 0 NA intron (ENSMUSG00000040209.12, intron 1 of 9) protein_coding-intron (ENSMUSG00000040209.12, intron 2 of 8) -20584 ENSMUSG00000103485.1 ENSMUSG00000103485 ENSMUST00000192900 Gm38001 TEC Interval_12758 chr10 4965504 4965734 + 0 NA intron (ENSMUSG00000019768.16, intron 7 of 7) protein_coding-intron (ENSMUSG00000019768.16, intron 6 of 8) 70837 ENSMUSG00000093189.1 ENSMUSG00000093189 ENSMUST00000175448 Gm25694 ribozyme Interval_71184 chr17 20977951 20980360 + 0 NA Intergenic Intergenic -9671 ENSMUSG00000093429.1 ENSMUSG00000093429 ENSMUST00000175863 Vmn1r-ps145 unprocessed_pseudogene Interval_21327 chr10 127984366 127984931 + 0 NA Intergenic Intergenic 22946 ENSMUSG00000025396.7 ENSMUSG00000025396 ENSMUST00000219780 Hsd17b6 protein_coding Interval_4378 chr1 73523248 73523610 + 0 NA exon (ENSMUSG00000100444.1, exon 1 of 1) lincRNA-exon (ENSMUSG00000100444.1, exon 1 of 1) 2031 ENSMUSG00000100444.1 ENSMUSG00000100444 ENSMUST00000186453 C530043A13Rik lincRNA Interval_123457 chr5 32661833 32662678 + 0 NA intron (ENSMUSG00000014932.15, intron 10 of 11) protein_coding-intron (ENSMUSG00000014932.15, intron 10 of 11) -11190 ENSMUSG00000085234.1 ENSMUSG00000085234 ENSMUST00000155976 Gm15614 antisense Interval_100847 chr2 172862807 172863668 + 0 NA Intergenic Intergenic 1104 ENSMUSG00000093160.1 ENSMUSG00000093160 ENSMUST00000175419 Gm22773 miRNA Interval_80426 chr18 42105418 42106365 + 0 NA intron (ENSMUSG00000057719.11, intron 3 of 8) protein_coding-intron (ENSMUSG00000057719.11, intron 3 of 8) -37142 ENSMUSG00000057719.11 ENSMUSG00000057719 ENSMUST00000236947 Sh3rf2 protein_coding Interval_87657 chr19 54038959 54039782 + 0 NA Intergenic Intergenic -5890 ENSMUSG00000033717.6 ENSMUSG00000033717 ENSMUST00000237285 Adra2a protein_coding Interval_51852 chr14 32970990 32971458 + 0 NA intron (ENSMUSG00000051506.17, intron 56 of 61) protein_coding-intron (ENSMUSG00000051506.17, intron 53 of 58) -24041 ENSMUSG00000041673.12 ENSMUSG00000041673 ENSMUST00000123910 Lrrc18 protein_coding Interval_118107 chr4 128992991 128993755 + 0 NA promoter-TSS (ENSMUSG00000028792.14) protein_coding-promoter-TSS (ENSMUSG00000028792.14) 20 ENSMUSG00000028792.14 ENSMUSG00000028792 ENSMUST00000152762 Ak2 protein_coding Interval_146506 chr7 46495287 46495613 + 0 NA intron (ENSMUSG00000030839.12, intron 3 of 3) protein_coding-intron (ENSMUSG00000030839.12, intron 10 of 10) 17330 ENSMUSG00000110316.1 ENSMUSG00000110316 ENSMUST00000211086 Gm45311 sense_intronic Interval_29870 chr11 87436230 87436432 + 0 NA intron (ENSMUSG00000010342.16, intron 2 of 3) protein_coding-intron (ENSMUSG00000010342.16, intron 2 of 30) -6906 ENSMUSG00000098943.1 ENSMUSG00000098943 ENSMUST00000183812 Rnu3b1 snoRNA Interval_162353 chr8 127338341 127338562 + 0 NA intron (ENSMUSG00000025812.18, intron 5 of 15) protein_coding-intron (ENSMUSG00000025812.18, intron 5 of 23) 167047 ENSMUSG00000025812.18 ENSMUSG00000025812 ENSMUST00000159940 Pard3 protein_coding Interval_4694 chr1 77382992 77383269 + 0 NA intron (ENSMUSG00000026235.14, intron 11 of 15) protein_coding-intron (ENSMUSG00000026235.14, intron 12 of 17) 113638 ENSMUSG00000099141.1 ENSMUSG00000099141 ENSMUST00000184495 Mir6352 miRNA Interval_85134 chr19 23093638 23095670 + 0 NA Intergenic Intergenic -18730 ENSMUSG00000097930.2 ENSMUSG00000097930 ENSMUST00000181623 C330002G04Rik lincRNA Interval_100481 chr2 169405091 169405838 + 0 NA promoter-TSS (ENSMUSG00000085350.1) lincRNA-promoter-TSS (ENSMUSG00000085350.1) -14 ENSMUSG00000085350.1 ENSMUSG00000085350 ENSMUST00000131509 4930529I22Rik lincRNA Interval_99499 chr2 162641405 162641882 + 0 NA intron (ENSMUSG00000053141.16, intron 1 of 29) protein_coding-intron (ENSMUSG00000053141.16, intron 1 of 30) -19520 ENSMUSG00000054457.5 ENSMUSG00000054457 ENSMUST00000145985 9430021M05Rik processed_transcript Interval_157575 chr8 71497438 71499669 + 0 NA intron (ENSMUSG00000034845.6, intron 5 of 5) protein_coding-intron (ENSMUSG00000034845.6, intron 5 of 5) 10450 ENSMUSG00000007610.15 ENSMUSG00000007610 ENSMUST00000146551 Gtpbp3 protein_coding Interval_105167 chr3 83098598 83099935 + 0 NA Intergenic Intergenic -28682 ENSMUSG00000102692.1 ENSMUSG00000102692 ENSMUST00000191829 Dchs2 protein_coding Interval_146094 chr7 43850585 43851097 + 0 NA exon (ENSMUSG00000074155.2, exon 5 of 5) protein_coding-exon (ENSMUSG00000074155.2, exon 5 of 5) 6572 ENSMUSG00000108781.1 ENSMUSG00000108781 ENSMUST00000206293 Gm44707 lincRNA Interval_139972 chr6 113122750 113123125 + 0 NA intron (ENSMUSG00000034269.12, intron 16 of 17) protein_coding-intron (ENSMUSG00000034269.12, intron 15 of 21) 12520 ENSMUSG00000034269.12 ENSMUSG00000034269 ENSMUST00000156048 Setd5 protein_coding Interval_148678 chr7 84084978 84086915 + 0 NA intron (ENSMUSG00000052353.13, intron 1 of 23) protein_coding-intron (ENSMUSG00000052353.13, intron 1 of 28) 556 ENSMUSG00000052353.13 ENSMUSG00000052353 ENSMUST00000147578 Cemip protein_coding Interval_14970 chr10 41552004 41553415 + 0 NA intron (ENSMUSG00000075225.15, intron 4 of 5) protein_coding-intron (ENSMUSG00000075225.15, intron 11 of 12) -1053 ENSMUSG00000090708.1 ENSMUSG00000090708 ENSMUST00000164074 Gm17196 antisense Interval_151750 chr7 126416444 126416856 + 0 NA Intergenic Intergenic -2100 ENSMUSG00000030724.7 ENSMUSG00000030724 ENSMUST00000206871 Cd19 protein_coding Interval_99631 chr2 163692329 163692770 + 0 NA promoter-TSS (ENSMUSG00000087129.1) antisense-promoter-TSS (ENSMUSG00000087129.1) -270 ENSMUSG00000087129.1 ENSMUSG00000087129 ENSMUST00000154065 Gm16316 antisense Interval_92586 chr2 60891917 60892417 + 0 NA intron (ENSMUSG00000026970.16, intron 1 of 13) protein_coding-intron (ENSMUSG00000026970.16, intron 1 of 13) -10729 ENSMUSG00000026970.16 ENSMUSG00000026970 ENSMUST00000128866 Rbms1 protein_coding Interval_8242 chr1 136682232 136684123 + 0 NA promoter-TSS (ENSMUSG00000097113.7) lincRNA-promoter-TSS (ENSMUSG00000097113.7) -219 ENSMUSG00000097113.7 ENSMUSG00000097113 ENSMUST00000180962 Gm19705 lincRNA Interval_29983 chr11 88533370 88535384 + 0 NA intron (ENSMUSG00000069769.13, intron 1 of 5) protein_coding-intron (ENSMUSG00000069769.13, intron 6 of 13) 55770 ENSMUSG00000069769.13 ENSMUSG00000069769 ENSMUST00000126293 Msi2 protein_coding Interval_114580 chr4 82674026 82674363 + 0 NA intron (ENSMUSG00000008575.17, intron 1 of 1) protein_coding-intron (ENSMUSG00000008575.17, intron 1 of 1) -18611 ENSMUSG00000086293.1 ENSMUSG00000086293 ENSMUST00000157011 Gm11269 antisense Interval_63514 chr15 101572925 101574356 + 0 NA exon (ENSMUSG00000022986.5, exon 1 of 9) protein_coding-exon (ENSMUSG00000022986.5, exon 1 of 9) 264 ENSMUSG00000022986.5 ENSMUSG00000022986 ENSMUST00000042957 Krt75 protein_coding Interval_13315 chr10 14678681 14679333 + 0 NA intron (ENSMUSG00000019868.16, intron 4 of 7) protein_coding-intron (ENSMUSG00000019868.16, intron 3 of 6) -10746 ENSMUSG00000019868.16 ENSMUSG00000019868 ENSMUST00000151805 Vta1 protein_coding Interval_110078 chr3 153077803 153078367 + 0 NA Intergenic Intergenic -96033 ENSMUSG00000039037.5 ENSMUSG00000039037 ENSMUST00000161757 St6galnac5 protein_coding Interval_27473 chr11 68089583 68090945 + 0 NA intron (ENSMUSG00000020903.13, intron 5 of 6) protein_coding-intron (ENSMUSG00000020903.13, intron 6 of 7) 5700 ENSMUSG00000083924.1 ENSMUSG00000083924 ENSMUST00000120312 Gm12304 processed_pseudogene Interval_161153 chr8 117825164 117825385 + 0 NA Intergenic Intergenic 23212 ENSMUSG00000074065.4 ENSMUSG00000074065 ENSMUST00000098368 Gm10617 pseudogene Interval_12753 chr10 4837459 4837697 + 0 NA intron (ENSMUSG00000019768.16, intron 5 of 7) protein_coding-intron (ENSMUSG00000019768.16, intron 4 of 8) 198878 ENSMUSG00000093189.1 ENSMUSG00000093189 ENSMUST00000175448 Gm25694 ribozyme Interval_84042 chr19 6921023 6922526 + 0 NA promoter-TSS (ENSMUSG00000024955.15) protein_coding-promoter-TSS (ENSMUSG00000024955.15) 66 ENSMUSG00000024955.15 ENSMUSG00000024955 ENSMUST00000145192 Esrra protein_coding Interval_135726 chr6 45273503 45273829 + 0 NA intron (ENSMUSG00000039419.17, intron 2 of 3) protein_coding-intron (ENSMUSG00000039419.17, intron 1 of 23) -27437 ENSMUSG00000108008.1 ENSMUSG00000108008 ENSMUST00000204742 Gm43869 TEC Interval_25299 chr11 46185309 46185632 + 0 NA Intergenic Intergenic 15383 ENSMUSG00000099331.1 ENSMUSG00000099331 ENSMUST00000183384 Mir7239 miRNA Interval_155436 chr8 33604204 33604439 + 0 NA intron (ENSMUSG00000009630.10, intron 1 of 6) protein_coding-intron (ENSMUSG00000009630.10, intron 1 of 6) 4696 ENSMUSG00000009630.10 ENSMUSG00000009630 ENSMUST00000009774 Ppp2cb protein_coding Interval_143180 chr7 4249580 4251881 + 0 NA Intergenic Intergenic -6971 ENSMUSG00000082042.1 ENSMUSG00000082042 ENSMUST00000119300 Gm15923 unprocessed_pseudogene Interval_151005 chr7 117577039 117577345 + 0 NA intron (ENSMUSG00000030657.11, intron 3 of 6) protein_coding-intron (ENSMUSG00000030657.11, intron 3 of 11) 101700 ENSMUSG00000030657.11 ENSMUSG00000030657 ENSMUST00000161889 Xylt1 protein_coding Interval_7137 chr1 127012045 127012297 + 0 NA Intergenic Intergenic 38525 ENSMUSG00000101385.1 ENSMUSG00000101385 ENSMUST00000185860 Gm5261 processed_pseudogene Interval_43987 chr13 38793269 38793908 + 0 NA promoter-TSS (ENSMUSG00000114319.1) lincRNA-promoter-TSS (ENSMUSG00000114319.1) 17764 ENSMUSG00000114845.1 ENSMUSG00000114845 ENSMUST00000224482 Gm47511 lincRNA Interval_165552 chr9 49389482 49390107 + 0 NA intron (ENSMUSG00000032259.8, intron 1 of 7) protein_coding-intron (ENSMUSG00000032259.8, intron 1 of 7) 29642 ENSMUSG00000032257.6 ENSMUSG00000032257 ENSMUST00000216227 Ankk1 protein_coding Interval_15094 chr10 42529762 42530028 + 0 NA intron (ENSMUSG00000019804.12, intron 2 of 3) protein_coding-intron (ENSMUSG00000019804.12, intron 2 of 3) 27865 ENSMUSG00000019804.12 ENSMUSG00000019804 ENSMUST00000105499 Snx3 protein_coding Interval_56931 chr14 123587485 123588011 + 0 NA intron (ENSMUSG00000000197.8, intron 6 of 29) protein_coding-intron (ENSMUSG00000000197.8, intron 6 of 43) 39396 ENSMUSG00000000197.8 ENSMUSG00000000197 ENSMUST00000228766 Nalcn protein_coding Interval_8431 chr1 139230495 139231240 + 0 NA exon (ENSMUSG00000063681.14, exon 10 of 10) protein_coding-exon (ENSMUSG00000063681.14, exon 10 of 10) 75715 ENSMUSG00000102243.1 ENSMUSG00000102243 ENSMUST00000191655 Gm37718 TEC Interval_116867 chr4 117829454 117830214 + 0 NA Intergenic Intergenic -4178 ENSMUSG00000083507.1 ENSMUSG00000083507 ENSMUST00000117298 Gm12842 processed_pseudogene Interval_5146 chr1 86032198 86033008 + 0 NA Intergenic Intergenic 10643 ENSMUSG00000026226.16 ENSMUSG00000026226 ENSMUST00000131151 Spata3 protein_coding Interval_151798 chr7 126739377 126740671 + 0 NA promoter-TSS (ENSMUSG00000108382.1) lincRNA-promoter-TSS (ENSMUSG00000108382.1) -605 ENSMUSG00000108382.1 ENSMUSG00000108382 ENSMUST00000205988 4930448A20Rik lincRNA Interval_688 chr1 9938721 9939810 + 0 NA intron (ENSMUSG00000046101.16, intron 2 of 2) protein_coding-intron (ENSMUSG00000046101.16, intron 13 of 13) 3284 ENSMUSG00000093178.1 ENSMUSG00000093178 ENSMUST00000175437 Snord87 snoRNA Interval_10171 chr1 166318988 166319480 + 0 NA Intergenic Intergenic -9649 ENSMUSG00000091393.1 ENSMUSG00000091393 ENSMUST00000168347 5330438I03Rik antisense Interval_92528 chr2 60323073 60323855 + 0 NA intron (ENSMUSG00000026980.15, intron 24 of 34) protein_coding-intron (ENSMUSG00000026980.15, intron 24 of 34) -14724 ENSMUSG00000086196.7 ENSMUSG00000086196 ENSMUST00000124654 Gm13571 antisense Interval_12334 chr1 192164010 192164393 + 0 NA Intergenic Intergenic 26856 ENSMUSG00000097316.2 ENSMUSG00000097316 ENSMUST00000195083 Gm10516 antisense Interval_143188 chr7 4326445 4326961 + 0 NA Intergenic Intergenic -11066 ENSMUSG00000062524.4 ENSMUSG00000062524 ENSMUST00000126417 Ncr1 protein_coding Interval_89497 chr2 21120622 21120836 + 0 NA TTS (ENSMUSG00000087219.1) lincRNA-TTS (ENSMUSG00000087219.1) 21225 ENSMUSG00000086821.3 ENSMUSG00000086821 ENSMUST00000137984 Gm13377 unprocessed_pseudogene Interval_17728 chr10 79774841 79775121 + 0 NA Intergenic Intergenic -2311 ENSMUSG00000020325.10 ENSMUSG00000020325 ENSMUST00000168798 Fstl3 protein_coding Interval_16118 chr10 60828288 60828746 + 0 NA intron (ENSMUSG00000020099.8, intron 1 of 15) protein_coding-intron (ENSMUSG00000020099.8, intron 1 of 16) 2865 ENSMUSG00000020099.8 ENSMUSG00000020099 ENSMUST00000218637 Unc5b protein_coding Interval_68458 chr16 77076747 77077587 + 0 NA exon (ENSMUSG00000022867.11, exon 14 of 24) protein_coding-exon (ENSMUSG00000022867.11, exon 14 of 24) 63461 ENSMUSG00000022867.11 ENSMUSG00000022867 ENSMUST00000232351 Usp25 protein_coding Interval_45660 chr13 56634187 56634402 + 0 NA intron (ENSMUSG00000035493.10, intron 12 of 16) protein_coding-intron (ENSMUSG00000035493.10, intron 12 of 16) 3081 ENSMUSG00000035493.10 ENSMUSG00000035493 ENSMUST00000226024 Tgfbi protein_coding Interval_7832 chr1 134011512 134011839 + 0 NA Intergenic Intergenic 21703 ENSMUSG00000099507.1 ENSMUSG00000099507 ENSMUST00000186040 Gm18970 processed_pseudogene Interval_11441 chr1 181947314 181948804 + 0 NA intron (ENSMUSG00000022995.16, intron 3 of 14) protein_coding-intron (ENSMUSG00000022995.16, intron 3 of 14) 5316 ENSMUSG00000103722.1 ENSMUSG00000103722 ENSMUST00000194331 2700078F05Rik TEC Interval_106761 chr3 100529196 100529689 + 0 NA Intergenic Intergenic 32013 ENSMUSG00000104943.1 ENSMUSG00000104943 ENSMUST00000199168 Gm42868 sense_intronic Interval_82275 chr18 69866947 69867175 + 0 NA Intergenic Intergenic 43663 ENSMUSG00000118028.1 ENSMUSG00000118028 ENSMUST00000235804 Gm50215 lincRNA Interval_61412 chr15 81437808 81438100 + 0 NA intron (ENSMUSG00000022401.12, intron 4 of 4) protein_coding-intron (ENSMUSG00000022401.12, intron 5 of 8) -18766 ENSMUSG00000091492.1 ENSMUSG00000091492 ENSMUST00000133273 Gm17025 antisense Interval_104728 chr3 69859879 69861546 + 0 NA promoter-TSS (ENSMUSG00000043461.13) protein_coding-promoter-TSS (ENSMUSG00000043461.13) -790 ENSMUSG00000043461.13 ENSMUSG00000043461 ENSMUST00000171529 Sptssb protein_coding Interval_66803 chr16 37763680 37763971 + 0 NA Intergenic Intergenic -13230 ENSMUSG00000022816.11 ENSMUSG00000022816 ENSMUST00000123077 Fstl1 protein_coding Interval_68626 chr16 81792607 81793633 + 0 NA intron (ENSMUSG00000116803.1, intron 1 of 1) processed_pseudogene-intron (ENSMUSG00000116803.1, intron 1 of 1) 904 ENSMUSG00000116803.1 ENSMUSG00000116803 ENSMUST00000231467 Gm49558 processed_pseudogene Interval_110072 chr3 152980582 152982277 + 0 NA intron (ENSMUSG00000039037.5, intron 1 of 2) protein_coding-intron (ENSMUSG00000039037.5, intron 1 of 4) 623 ENSMUSG00000039037.5 ENSMUSG00000039037 ENSMUST00000161757 St6galnac5 protein_coding Interval_127794 chr5 107880536 107882853 + 0 NA Intergenic Intergenic 13220 ENSMUSG00000104748.1 ENSMUSG00000104748 ENSMUST00000196922 Gm43592 TEC Interval_174761 chrX 165826103 165826507 + 0 NA Intergenic Intergenic -108790 ENSMUSG00000064497.1 ENSMUSG00000064497 ENSMUST00000082563 Gm22062 snRNA Interval_169222 chr9 95637313 95638315 + 0 NA exon (ENSMUSG00000015354.8, exon 1 of 9) protein_coding-exon (ENSMUSG00000015354.8, exon 1 of 9) 451 ENSMUSG00000086248.2 ENSMUSG00000086248 ENSMUST00000131619 Gm16127 processed_transcript Interval_169018 chr9 90225928 90226174 + 0 NA exon (ENSMUSG00000037410.13, exon 6 of 13) protein_coding-exon (ENSMUSG00000037410.13, exon 6 of 13) -4426 ENSMUSG00000081520.1 ENSMUSG00000081520 ENSMUST00000120385 Gm16200 processed_pseudogene Interval_106477 chr3 96593713 96594549 + 0 NA promoter-TSS (ENSMUSG00000028104.14) protein_coding-promoter-TSS (ENSMUSG00000028104.14) 28 ENSMUSG00000028104.14 ENSMUSG00000028104 ENSMUST00000145001 Polr3gl protein_coding Interval_71693 chr17 25474411 25475292 + 0 NA exon (ENSMUSG00000024175.2, exon 4 of 6) protein_coding-exon (ENSMUSG00000024175.2, exon 4 of 6) 3254 ENSMUSG00000024175.2 ENSMUSG00000024175 ENSMUST00000234436 Tekt4 protein_coding Interval_75028 chr17 61450200 61450694 + 0 NA Intergenic Intergenic 53137 ENSMUSG00000117016.1 ENSMUSG00000117016 ENSMUST00000233539 Gm6174 processed_pseudogene Interval_170755 chr9 110552284 110552486 + 0 NA intron (ENSMUSG00000044791.16, intron 1 of 5) protein_coding-intron (ENSMUSG00000044791.16, intron 3 of 20) 9174 ENSMUSG00000104983.1 ENSMUSG00000104983 ENSMUST00000199595 Gm42763 TEC Interval_23319 chr11 21337970 21338656 + 0 NA intron (ENSMUSG00000001891.16, intron 3 of 9) protein_coding-intron (ENSMUSG00000001891.16, intron 3 of 9) 6362 ENSMUSG00000089555.1 ENSMUSG00000089555 ENSMUST00000158930 Mir1933 miRNA Interval_81027 chr18 53126238 53126440 + 0 NA Intergenic Intergenic -50050 ENSMUSG00000034484.8 ENSMUSG00000034484 ENSMUST00000236111 Snx2 protein_coding Interval_128683 chr5 114696699 114697422 + 0 NA Intergenic Intergenic -6119 ENSMUSG00000011884.13 ENSMUSG00000011884 ENSMUST00000112212 Gltp protein_coding Interval_24800 chr11 38424657 38425030 + 0 NA Intergenic Intergenic 95170 ENSMUSG00000087296.1 ENSMUSG00000087296 ENSMUST00000133599 Gm12130 lincRNA Interval_51327 chr14 26460752 26461056 + 0 NA promoter-TSS (ENSMUSG00000021870.17) protein_coding-promoter-TSS (ENSMUSG00000021870.17) 2790 ENSMUSG00000021870.17 ENSMUSG00000021870 ENSMUST00000144737 Slmap protein_coding Interval_86364 chr19 38972833 38974078 + 0 NA Intergenic Intergenic -3192 ENSMUSG00000114610.1 ENSMUSG00000114610 ENSMUST00000225458 Cyp2c52-ps unprocessed_pseudogene Interval_138269 chr6 86744264 86744462 + 0 NA intron (ENSMUSG00000029994.17, intron 11 of 12) protein_coding-intron (ENSMUSG00000029994.17, intron 10 of 12) 10874 ENSMUSG00000107961.1 ENSMUSG00000107961 ENSMUST00000204551 Gm44036 lincRNA Interval_50502 chr14 14248323 14248862 + 0 NA Intergenic Intergenic 8911 ENSMUSG00000114268.1 ENSMUSG00000114268 ENSMUST00000226085 Gm48841 processed_pseudogene Interval_89436 chr2 20671562 20672243 + 0 NA intron (ENSMUSG00000036617.17, intron 5 of 5) protein_coding-intron (ENSMUSG00000036617.17, intron 4 of 18) 41332 ENSMUSG00000086418.1 ENSMUSG00000086418 ENSMUST00000137186 Gm13362 antisense Interval_54354 chr14 67887762 67888499 + 0 NA intron (ENSMUSG00000044447.5, intron 1 of 17) protein_coding-intron (ENSMUSG00000044447.5, intron 1 of 51) -28385 ENSMUSG00000098866.1 ENSMUSG00000098866 ENSMUST00000183732 Mir6539 miRNA Interval_65130 chr16 20031353 20032201 + 0 NA Intergenic Intergenic -65458 ENSMUSG00000043008.9 ENSMUSG00000043008 ENSMUST00000165530 Klhl6 protein_coding Interval_6288 chr1 105489699 105490388 + 0 NA intron (ENSMUSG00000101214.1, intron 1 of 5) sense_overlapping-intron (ENSMUSG00000101214.1, intron 1 of 5) 34072 ENSMUSG00000067017.5 ENSMUSG00000067017 ENSMUST00000086725 Capza1-ps1 pseudogene Interval_139068 chr6 94741618 94741975 + 0 NA Intergenic Intergenic -41638 ENSMUSG00000030029.14 ENSMUSG00000030029 ENSMUST00000124165 Lrig1 protein_coding Interval_33388 chr11 116273300 116274712 + 0 NA exon (ENSMUSG00000020780.15, exon 1 of 16) protein_coding-exon (ENSMUSG00000020780.15, exon 1 of 16) -7480 ENSMUSG00000020793.5 ENSMUSG00000020793 ENSMUST00000154277 Galr2 protein_coding Interval_116373 chr4 110581922 110582129 + 0 NA intron (ENSMUSG00000061298.14, intron 3 of 12) protein_coding-intron (ENSMUSG00000061298.14, intron 3 of 12) -68293 ENSMUSG00000082348.1 ENSMUSG00000082348 ENSMUST00000121546 Gm12807 processed_pseudogene Interval_25436 chr11 48384409 48384731 + 0 NA Intergenic Intergenic -94257 ENSMUSG00000081952.1 ENSMUSG00000081952 ENSMUST00000120545 Gm12178 processed_pseudogene Interval_161707 chr8 122190562 122191460 + 0 NA intron (ENSMUSG00000092329.1, intron 1 of 15) protein_coding-intron (ENSMUSG00000092329.1, intron 1 of 15) -67609 ENSMUSG00000043903.4 ENSMUSG00000043903 ENSMUST00000055537 Zfp469 protein_coding Interval_91783 chr2 49522534 49522785 + 0 NA exon (ENSMUSG00000069495.12, exon 4 of 14) protein_coding-exon (ENSMUSG00000069495.12, exon 4 of 14) -6216 ENSMUSG00000069495.12 ENSMUSG00000069495 ENSMUST00000152485 Epc2 protein_coding Interval_128899 chr5 115951884 115953884 + 0 NA TTS (ENSMUSG00000029516.19) protein_coding-TTS (ENSMUSG00000029516.19) 50454 ENSMUSG00000107263.1 ENSMUSG00000107263 ENSMUST00000201457 Gm42471 TEC Interval_22789 chr11 15549597 15549818 + 0 NA Intergenic Intergenic 67401 ENSMUSG00000083292.1 ENSMUSG00000083292 ENSMUST00000122400 Gm12010 processed_pseudogene Interval_65268 chr16 21149189 21150211 + 0 NA Intergenic Intergenic 4300 ENSMUSG00000090356.2 ENSMUSG00000090356 ENSMUST00000170665 Teddm3 protein_coding Interval_159367 chr8 94104066 94104561 + 0 NA Intergenic Intergenic -24557 ENSMUSG00000031755.6 ENSMUSG00000031755 ENSMUST00000172347 Bbs2 protein_coding Interval_106358 chr3 95624552 95625667 + 0 NA promoter-TSS (ENSMUSG00000038619.12) protein_coding-promoter-TSS (ENSMUSG00000038619.12) 116 ENSMUSG00000038619.12 ENSMUSG00000038619 ENSMUST00000197050 Ensa protein_coding Interval_144394 chr7 24890032 24892689 + 0 NA Intergenic Intergenic -6021 ENSMUSG00000003379.7 ENSMUSG00000003379 ENSMUST00000003469 Cd79a protein_coding Interval_50349 chr14 11983218 11983781 + 0 NA intron (ENSMUSG00000021745.14, intron 4 of 29) protein_coding-intron (ENSMUSG00000021745.14, intron 4 of 29) -2291 ENSMUSG00000085883.2 ENSMUSG00000085883 ENSMUST00000151564 Gm3848 antisense Interval_132406 chr5 144743412 144743598 + 0 NA intron (ENSMUSG00000043388.8, intron 6 of 7) protein_coding-intron (ENSMUSG00000043388.8, intron 6 of 7) 18313 ENSMUSG00000043388.8 ENSMUSG00000043388 ENSMUST00000197254 Tmem130 protein_coding Interval_127127 chr5 100465651 100467784 + 0 NA intron (ENSMUSG00000035310.15, intron 2 of 10) protein_coding-intron (ENSMUSG00000035310.15, intron 4 of 12) 31916 ENSMUSG00000035310.15 ENSMUSG00000035310 ENSMUST00000144716 Lin54 protein_coding Interval_144182 chr7 19831945 19832296 + 0 NA Intergenic Intergenic -14853 ENSMUSG00000109424.1 ENSMUSG00000109424 ENSMUST00000207965 Gm44658 lincRNA Interval_110582 chr4 4214364 4214579 + 0 NA Intergenic Intergenic -75652 ENSMUSG00000045573.9 ENSMUSG00000045573 ENSMUST00000133567 Penk protein_coding Interval_125666 chr5 73152049 73152672 + 0 NA intron (ENSMUSG00000070733.13, intron 3 of 11) protein_coding-intron (ENSMUSG00000070733.13, intron 3 of 62) -4654 ENSMUSG00000086376.2 ENSMUSG00000086376 ENSMUST00000146728 1700071G01Rik antisense Interval_113353 chr4 53750062 53751068 + 0 NA intron (ENSMUSG00000028414.17, intron 10 of 11) protein_coding-intron (ENSMUSG00000028414.17, intron 8 of 8) -29140 ENSMUSG00000028417.3 ENSMUSG00000028417 ENSMUST00000030124 Tal2 protein_coding Interval_131324 chr5 136464601 136466014 + 0 NA intron (ENSMUSG00000029705.17, intron 1 of 20) protein_coding-intron (ENSMUSG00000029705.17, intron 2 of 23) 71170 ENSMUSG00000104369.1 ENSMUSG00000104369 ENSMUST00000192800 Gm38082 TEC Interval_66651 chr16 35869103 35869672 + 0 NA intron (ENSMUSG00000034422.14, intron 1 of 4) protein_coding-intron (ENSMUSG00000034422.14, intron 1 of 16) -1436 ENSMUSG00000116639.1 ENSMUSG00000116639 ENSMUST00000231830 Gm49730 TEC Interval_97401 chr2 135781412 135781662 + 0 NA intron (ENSMUSG00000039943.16, intron 1 of 4) protein_coding-intron (ENSMUSG00000039943.16, intron 1 of 36) 31390 ENSMUSG00000086928.1 ENSMUSG00000086928 ENSMUST00000140949 Gm14210 lincRNA Interval_138179 chr6 85961037 85962119 + 0 NA promoter-TSS (ENSMUSG00000030002.15) protein_coding-promoter-TSS (ENSMUSG00000030002.15) -45 ENSMUSG00000107230.1 ENSMUSG00000107230 ENSMUST00000201818 Gm19265 antisense Interval_41046 chr12 110790098 110791354 + 0 NA intron (ENSMUSG00000037957.14, intron 3 of 3) protein_coding-intron (ENSMUSG00000037957.14, intron 2 of 2) 50201 ENSMUSG00000056458.16 ENSMUSG00000056458 ENSMUST00000177224 Mok protein_coding Interval_134853 chr6 32560069 32560370 + 0 NA intron (ENSMUSG00000029765.12, intron 1 of 31) protein_coding-intron (ENSMUSG00000029765.12, intron 1 of 31) 49146 ENSMUSG00000086763.1 ENSMUSG00000086763 ENSMUST00000150314 Plxna4os1 antisense Interval_172292 chrX 12530297 12531472 + 0 NA Intergenic Intergenic -56917 ENSMUSG00000031007.2 ENSMUSG00000031007 ENSMUST00000033313 Atp6ap2 protein_coding Interval_89757 chr2 25246430 25246937 + 0 NA TTS (ENSMUSG00000006471.18) protein_coding-TTS (ENSMUSG00000006471.18) 180 ENSMUSG00000115018.2 ENSMUSG00000115018 ENSMUST00000228627 Ndor1 protein_coding Interval_89306 chr2 19102344 19102888 + 0 NA exon (ENSMUSG00000083281.1, exon 1 of 1) processed_pseudogene-exon (ENSMUSG00000083281.1, exon 1 of 1) 482 ENSMUSG00000083281.1 ENSMUSG00000083281 ENSMUST00000120451 Gm13332 processed_pseudogene Interval_52245 chr14 40986196 40986666 + 0 NA Intergenic Intergenic 18102 ENSMUSG00000021792.15 ENSMUSG00000021792 ENSMUST00000152837 Prxl2a protein_coding Interval_47295 chr13 80828961 80829181 + 0 NA Intergenic Intergenic 56453 ENSMUSG00000089827.1 ENSMUSG00000089827 ENSMUST00000161006 1700023H06Rik processed_transcript Interval_120941 chr4 151799803 151800019 + 0 NA intron (ENSMUSG00000014592.21, intron 3 of 3) protein_coding-intron (ENSMUSG00000014592.21, intron 3 of 23) 61793 ENSMUSG00000014592.21 ENSMUSG00000014592 ENSMUST00000135780 Camta1 protein_coding Interval_113250 chr4 52168424 52168619 + 0 NA Intergenic Intergenic -72382 ENSMUSG00000083539.1 ENSMUSG00000083539 ENSMUST00000121199 Gm12466 processed_pseudogene Interval_18024 chr10 81413418 81414220 + 0 NA intron (ENSMUSG00000055053.18, intron 2 of 9) protein_coding-intron (ENSMUSG00000055053.18, intron 2 of 9) 2478 ENSMUSG00000105379.1 ENSMUSG00000105379 ENSMUST00000199973 Mir1191b miRNA Interval_171292 chr9 116132494 116132742 + 0 NA intron (ENSMUSG00000032440.13, intron 1 of 6) protein_coding-intron (ENSMUSG00000032440.13, intron 1 of 6) 42647 ENSMUSG00000032440.13 ENSMUSG00000032440 ENSMUST00000035014 Tgfbr2 protein_coding Interval_113527 chr4 55563977 55564462 + 0 NA intron (ENSMUSG00000066176.3, intron 1 of 1) lincRNA-intron (ENSMUSG00000066176.3, intron 1 of 1) 954 ENSMUSG00000066176.3 ENSMUSG00000066176 ENSMUST00000135987 Gm12511 lincRNA Interval_166582 chr9 61073376 61073890 + 0 NA Intergenic Intergenic -17964 ENSMUSG00000111180.1 ENSMUSG00000111180 ENSMUST00000216861 Gm39348 lincRNA Interval_78997 chr18 23803383 23804599 + 0 NA promoter-TSS (ENSMUSG00000024277.14) protein_coding-promoter-TSS (ENSMUSG00000024277.14) 13380 ENSMUSG00000089290.1 ENSMUSG00000089290 ENSMUST00000158665 Gm23207 snRNA Interval_40275 chr12 103041848 103043643 + 0 NA intron (ENSMUSG00000021198.16, intron 8 of 51) protein_coding-intron (ENSMUSG00000021198.16, intron 5 of 46) -14333 ENSMUSG00000113706.1 ENSMUSG00000113706 ENSMUST00000223546 Gm47201 processed_pseudogene Interval_65285 chr16 21221496 21221800 + 0 NA promoter-TSS (ENSMUSG00000005958.15) protein_coding-promoter-TSS (ENSMUSG00000005958.15) 11124 ENSMUSG00000005958.15 ENSMUSG00000005958 ENSMUST00000160053 Ephb3 protein_coding Interval_85306 chr19 24535539 24535872 + 0 NA intron (ENSMUSG00000024867.14, intron 1 of 3) protein_coding-intron (ENSMUSG00000024867.14, intron 1 of 14) 20133 ENSMUSG00000024867.14 ENSMUSG00000024867 ENSMUST00000145829 Pip5k1b protein_coding Interval_50031 chr13 119839846 119840601 + 0 NA intron (ENSMUSG00000095514.2, intron 1 of 1) protein_coding-intron (ENSMUSG00000095514.2, intron 1 of 1) -5125 ENSMUSG00000095514.2 ENSMUSG00000095514 ENSMUST00000195797 D13Ertd608e protein_coding Interval_49253 chr13 109827969 109828464 + 0 NA intron (ENSMUSG00000021699.17, intron 6 of 15) protein_coding-intron (ENSMUSG00000021699.17, intron 5 of 14) -75593 ENSMUSG00000084651.1 ENSMUSG00000084651 ENSMUST00000122702 Mir1904 miRNA Interval_154462 chr8 18345118 18346642 + 0 NA Intergenic Intergenic -11542 ENSMUSG00000110056.1 ENSMUSG00000110056 ENSMUST00000211704 1700014L14Rik lincRNA Interval_130611 chr5 129186382 129186822 + 0 NA intron (ENSMUSG00000044017.16, intron 18 of 24) protein_coding-intron (ENSMUSG00000044017.16, intron 19 of 25) -58085 ENSMUSG00000060419.8 ENSMUSG00000060419 ENSMUST00000140155 Rps16-ps2 processed_pseudogene Interval_109440 chr3 142443181 142444773 + 0 NA Intergenic Intergenic -58819 ENSMUSG00000105504.4 ENSMUSG00000105504 ENSMUST00000199578 Gbp5 protein_coding Interval_161942 chr8 123948655 123950723 + 0 NA promoter-TSS (ENSMUSG00000039509.8) protein_coding-promoter-TSS (ENSMUSG00000039509.8) 257 ENSMUSG00000110615.1 ENSMUSG00000110615 ENSMUST00000212250 Gm45890 antisense Interval_118029 chr4 128471704 128472422 + 0 NA intron (ENSMUSG00000028804.20, intron 32 of 70) protein_coding-intron (ENSMUSG00000028804.20, intron 32 of 70) -80512 ENSMUSG00000028804.20 ENSMUSG00000028804 ENSMUST00000221199 Csmd2 protein_coding Interval_14727 chr10 39412425 39412661 + 0 NA intron (ENSMUSG00000019843.14, intron 2 of 12) protein_coding-intron (ENSMUSG00000019843.14, intron 2 of 13) -7466 ENSMUSG00000019843.14 ENSMUSG00000019843 ENSMUST00000123205 Fyn protein_coding Interval_164051 chr9 31167229 31167661 + 0 NA TTS (ENSMUSG00000031996.17) protein_coding-TTS (ENSMUSG00000031996.17) -6123 ENSMUSG00000031996.17 ENSMUSG00000031996 ENSMUST00000213273 Aplp2 protein_coding Interval_20675 chr10 120170042 120172332 + 0 NA promoter-TSS (ENSMUSG00000020227.10) protein_coding-promoter-TSS (ENSMUSG00000020227.10) 2538 ENSMUSG00000112894.1 ENSMUSG00000112894 ENSMUST00000220425 Gm47009 antisense Interval_8841 chr1 151471143 151473203 + 0 NA promoter-TSS (ENSMUSG00000026484.13) protein_coding-promoter-TSS (ENSMUSG00000026484.13) 3989 ENSMUSG00000026484.13 ENSMUSG00000026484 ENSMUST00000187991 Rnf2 protein_coding Interval_33646 chr11 117721343 117721585 + 0 NA exon (ENSMUSG00000025571.13, exon 5 of 22) protein_coding-exon (ENSMUSG00000025571.13, exon 5 of 22) -27767 ENSMUSG00000025571.13 ENSMUSG00000025571 ENSMUST00000141287 Tnrc6c protein_coding Interval_158920 chr8 87958003 87962757 + 0 NA promoter-TSS (ENSMUSG00000045333.15) protein_coding-promoter-TSS (ENSMUSG00000045333.15) -6518 ENSMUSG00000045333.15 ENSMUSG00000045333 ENSMUST00000173092 Zfp423 protein_coding Interval_169098 chr9 92374759 92375922 + 0 NA Intergenic Intergenic 31835 ENSMUSG00000074139.8 ENSMUSG00000074139 ENSMUST00000135182 1700057G04Rik protein_coding Interval_27844 chr11 70366894 70368175 + 0 NA Intergenic Intergenic 9396 ENSMUSG00000082145.1 ENSMUSG00000082145 ENSMUST00000120351 Gm12312 processed_pseudogene Interval_132815 chr5 148069859 148070474 + 0 NA intron (ENSMUSG00000029651.16, intron 1 of 14) protein_coding-intron (ENSMUSG00000029651.16, intron 1 of 14) -113000 ENSMUSG00000085565.1 ENSMUSG00000085565 ENSMUST00000138406 Gm15721 lincRNA Interval_110001 chr3 152411116 152411488 + 0 NA intron (ENSMUSG00000039068.16, intron 1 of 13) protein_coding-intron (ENSMUSG00000039068.16, intron 1 of 13) 15170 ENSMUSG00000039068.16 ENSMUSG00000039068 ENSMUST00000135044 Zzz3 protein_coding Interval_46704 chr13 69500052 69500310 + 0 NA intron (ENSMUSG00000034575.13, intron 12 of 12) protein_coding-intron (ENSMUSG00000034575.13, intron 12 of 12) -13819 ENSMUSG00000113486.1 ENSMUSG00000113486 ENSMUST00000221578 Gm48676 processed_pseudogene Interval_170816 chr9 110946008 110948492 + 0 NA Intergenic Intergenic -1175 ENSMUSG00000032494.12 ENSMUSG00000032494 ENSMUST00000199196 Tdgf1 protein_coding Interval_107050 chr3 103171306 103172603 + 0 NA exon (ENSMUSG00000005687.14, exon 2 of 7) protein_coding-exon (ENSMUSG00000005687.14, exon 2 of 7) 192 ENSMUSG00000005687.14 ENSMUSG00000005687 ENSMUST00000147042 Bcas2 protein_coding Interval_164164 chr9 32103889 32104160 + 0 NA Intergenic Intergenic 25743 ENSMUSG00000110840.1 ENSMUSG00000110840 ENSMUST00000214707 Gm47496 processed_pseudogene Interval_152180 chr7 130470511 130471210 + 0 NA intron (ENSMUSG00000030850.17, intron 2 of 5) protein_coding-intron (ENSMUSG00000030850.17, intron 8 of 11) -13187 ENSMUSG00000108940.1 ENSMUSG00000108940 ENSMUST00000207954 Gm45719 TEC Interval_23197 chr11 20475755 20476364 + 0 NA Intergenic Intergenic 29647 ENSMUSG00000083878.3 ENSMUSG00000083878 ENSMUST00000119032 Gm12034 processed_pseudogene Interval_51211 chr14 25035469 25036047 + 0 NA Intergenic Intergenic 4661 ENSMUSG00000114416.1 ENSMUSG00000114416 ENSMUST00000224831 Gm47907 TEC Interval_106035 chr3 91052662 91053282 + 0 NA Intergenic Intergenic 13399 ENSMUSG00000105919.1 ENSMUSG00000105919 ENSMUST00000199715 Gm7166 processed_pseudogene Interval_39784 chr12 98258530 98259714 + 0 NA promoter-TSS (ENSMUSG00000112860.1) antisense-promoter-TSS (ENSMUSG00000112860.1) 62 ENSMUSG00000112860.1 ENSMUSG00000112860 ENSMUST00000218708 Gm47439 antisense Interval_154019 chr8 11923940 11924841 + 0 NA Intergenic Intergenic 23907 ENSMUSG00000110002.1 ENSMUSG00000110002 ENSMUST00000211135 Gm45680 lincRNA Interval_71135 chr17 19459342 19459719 + 0 NA intron (ENSMUSG00000116984.1, intron 6 of 7) lincRNA-intron (ENSMUSG00000116984.1, intron 6 of 7) 6205 ENSMUSG00000093627.2 ENSMUSG00000093627 ENSMUST00000176230 Vmn2r-ps121 unprocessed_pseudogene Interval_13984 chr10 25274634 25275827 + 0 NA intron (ENSMUSG00000039166.16, intron 3 of 4) protein_coding-intron (ENSMUSG00000039166.16, intron 3 of 7) 6622 ENSMUSG00000089048.1 ENSMUSG00000089048 ENSMUST00000158423 Gm26167 misc_RNA Interval_65585 chr16 23632519 23633025 + 0 NA Intergenic Intergenic 31030 ENSMUSG00000033355.6 ENSMUSG00000033355 ENSMUST00000211349 Rtp4 protein_coding Interval_68282 chr16 72303489 72303676 + 0 NA Intergenic Intergenic 68859 ENSMUSG00000116910.1 ENSMUSG00000116910 ENSMUST00000232381 Gm49670 processed_pseudogene Interval_83274 chr18 83335179 83336104 + 0 NA Intergenic Intergenic -9757 ENSMUSG00000118333.1 ENSMUSG00000118333 ENSMUST00000236997 4921531P14Rik lincRNA Interval_67699 chr16 56028800 56030416 + 0 NA promoter-TSS (ENSMUSG00000071533.11) protein_coding-promoter-TSS (ENSMUSG00000071533.11) 98 ENSMUSG00000071533.11 ENSMUSG00000071533 ENSMUST00000122253 Pcnp protein_coding Interval_45582 chr13 56052453 56053921 + 0 NA intron (ENSMUSG00000114493.2, intron 5 of 5) antisense-intron (ENSMUSG00000114493.2, intron 2 of 2) -22953 ENSMUSG00000114229.1 ENSMUSG00000114229 ENSMUST00000225745 Gm47072 processed_pseudogene Interval_32252 chr11 106507493 106507893 + 0 NA intron (ENSMUSG00000040548.16, intron 9 of 10) protein_coding-intron (ENSMUSG00000040548.16, intron 10 of 11) 6448 ENSMUSG00000080540.2 ENSMUSG00000080540 ENSMUST00000116890 Gm22711 snoRNA Interval_59583 chr15 55583467 55583692 + 0 NA intron (ENSMUSG00000022369.13, intron 11 of 16) protein_coding-intron (ENSMUSG00000022369.13, intron 11 of 21) -25831 ENSMUSG00000022370.13 ENSMUSG00000022370 ENSMUST00000170135 Mrpl13 protein_coding Interval_77557 chr17 91556670 91557529 + 0 NA promoter-TSS (ENSMUSG00000087425.1) lincRNA-promoter-TSS (ENSMUSG00000087425.1) -28 ENSMUSG00000087425.1 ENSMUSG00000087425 ENSMUST00000141811 Gm15404 lincRNA Interval_5573 chr1 89901362 89901592 + 0 NA Intergenic Intergenic 27708 ENSMUSG00000034486.8 ENSMUSG00000034486 ENSMUST00000187633 Gbx2 protein_coding Interval_102262 chr3 20102199 20102413 + 0 NA intron (ENSMUSG00000002428.12, intron 18 of 20) protein_coding-intron (ENSMUSG00000002428.12, intron 18 of 24) -6170 ENSMUSG00000002428.12 ENSMUSG00000002428 ENSMUST00000155635 Hltf protein_coding Interval_137274 chr6 70963747 70964990 + 0 NA Intergenic Intergenic 7837 ENSMUSG00000055874.6 ENSMUSG00000055874 ENSMUST00000069634 Foxi3 protein_coding Interval_61560 chr15 82332511 82332770 + 0 NA promoter-TSS (ENSMUSG00000022453.8) protein_coding-promoter-TSS (ENSMUSG00000022453.8) 45 ENSMUSG00000022453.8 ENSMUSG00000022453 ENSMUST00000230269 Naga protein_coding Interval_81538 chr18 61548976 61549253 + 0 NA Intergenic Intergenic -6225 ENSMUSG00000024576.14 ENSMUSG00000024576 ENSMUST00000170482 Csnk1a1 protein_coding Interval_142849 chr6 146409785 146410724 + 0 NA intron (ENSMUSG00000030287.15, intron 8 of 13) protein_coding-intron (ENSMUSG00000030287.15, intron 9 of 56) 33837 ENSMUSG00000107743.1 ENSMUSG00000107743 ENSMUST00000204247 Gm44087 TEC Interval_74309 chr17 48738435 48739292 + 0 NA promoter-TSS (ENSMUSG00000110276.1) lincRNA-promoter-TSS (ENSMUSG00000110276.1) -117 ENSMUSG00000110276.1 ENSMUSG00000110276 ENSMUST00000209681 Gm45330 lincRNA Interval_118391 chr4 131076454 131077046 + 0 NA Intergenic Intergenic -66276 ENSMUSG00000086262.7 ENSMUSG00000086262 ENSMUST00000153810 A930031H19Rik lincRNA Interval_87028 chr19 45675564 45677250 + 0 NA Intergenic Intergenic 66508 ENSMUSG00000025219.13 ENSMUSG00000025219 ENSMUST00000111925 Fgf8 protein_coding Interval_165395 chr9 47352941 47353809 + 0 NA intron (ENSMUSG00000109844.2, intron 2 of 6) lincRNA-intron (ENSMUSG00000109844.2, intron 2 of 5) -82632 ENSMUSG00000109844.2 ENSMUSG00000109844 ENSMUST00000209906 Gm31816 lincRNA Interval_83738 chr19 4300041 4300756 + 0 NA intron (ENSMUSG00000024858.14, intron 1 of 17) protein_coding-intron (ENSMUSG00000024858.14, intron 2 of 21) -12549 ENSMUSG00000024858.14 ENSMUSG00000024858 ENSMUST00000167511 Grk2 protein_coding Interval_79103 chr18 24553592 24553909 + 0 NA Intergenic Intergenic -4852 ENSMUSG00000095437.1 ENSMUSG00000095437 ENSMUST00000116938 Gm23606 miRNA Interval_136201 chr6 52005291 52007217 + 0 NA intron (ENSMUSG00000059182.7, intron 1 of 12) protein_coding-intron (ENSMUSG00000059182.7, intron 1 of 12) -6347 ENSMUSG00000108244.1 ENSMUSG00000108244 ENSMUST00000203453 Gm44077 lincRNA Interval_113915 chr4 59838070 59838286 + 0 NA intron (ENSMUSG00000028385.14, intron 1 of 8) protein_coding-intron (ENSMUSG00000028385.14, intron 1 of 8) 4501 ENSMUSG00000080772.1 ENSMUSG00000080772 ENSMUST00000120410 Gm12543 transcribed_processed_pseudogene Interval_111950 chr4 32757907 32758139 + 0 NA intron (ENSMUSG00000058006.12, intron 86 of 101) protein_coding-intron (ENSMUSG00000058006.12, intron 86 of 101) -42256 ENSMUSG00000045854.4 ENSMUSG00000045854 ENSMUST00000130321 Lyrm2 protein_coding Interval_99611 chr2 163586352 163586813 + 0 NA Intergenic Intergenic -15732 ENSMUSG00000017679.16 ENSMUSG00000017679 ENSMUST00000132904 Ttpal protein_coding Interval_87591 chr19 53610273 53610855 + 0 NA intron (ENSMUSG00000024974.10, intron 2 of 28) protein_coding-intron (ENSMUSG00000024974.10, intron 2 of 28) -11153 ENSMUSG00000118159.1 ENSMUSG00000118159 ENSMUST00000236407 Gm50402 TEC Interval_23138 chr11 20132893 20133375 + 0 NA Intergenic Intergenic -9434 ENSMUSG00000081346.1 ENSMUSG00000081346 ENSMUST00000121917 Gm12030 processed_pseudogene Interval_27689 chr11 69496094 69496490 + 0 NA intron (ENSMUSG00000005237.14, intron 17 of 85) protein_coding-intron (ENSMUSG00000005237.14, intron 16 of 84) 9143 ENSMUSG00000098432.1 ENSMUSG00000098432 ENSMUST00000184128 Gm27493 miRNA Interval_123385 chr5 32085140 32085980 + 0 NA TTS (ENSMUSG00000052139.18) protein_coding-TTS (ENSMUSG00000052139.18) 47611 ENSMUSG00000102759.1 ENSMUSG00000102759 ENSMUST00000195772 Gm10463 TEC Interval_98077 chr2 147656244 147657145 + 0 NA Intergenic Intergenic -11321 ENSMUSG00000081741.1 ENSMUSG00000081741 ENSMUST00000119382 Gm14106 processed_pseudogene Interval_148625 chr7 83549693 83550369 + 0 NA exon (ENSMUSG00000094841.2, exon 1 of 2) lincRNA-exon (ENSMUSG00000094841.2, exon 1 of 2) 225 ENSMUSG00000094841.2 ENSMUSG00000094841 ENSMUST00000208877 Gm10610 lincRNA Interval_135193 chr6 37415168 37416062 + 0 NA intron (ENSMUSG00000038648.5, intron 1 of 11) protein_coding-intron (ENSMUSG00000038648.5, intron 1 of 11) -79080 ENSMUSG00000038648.5 ENSMUSG00000038648 ENSMUST00000128534 Creb3l2 protein_coding Interval_61992 chr15 85712637 85713190 + 0 NA Intergenic Intergenic 5594 ENSMUSG00000065564.1 ENSMUSG00000065564 ENSMUST00000083630 Mirlet7b miRNA Interval_131598 chr5 138619266 138620061 + 0 NA promoter-TSS (ENSMUSG00000058291.14) protein_coding-promoter-TSS (ENSMUSG00000058291.14) 75 ENSMUSG00000058291.14 ENSMUSG00000058291 ENSMUST00000199066 Zfp68 protein_coding Interval_6710 chr1 118929411 118929631 + 0 NA intron (ENSMUSG00000048402.14, intron 2 of 6) protein_coding-intron (ENSMUSG00000048402.14, intron 2 of 13) -24699 ENSMUSG00000098273.1 ENSMUSG00000098273 ENSMUST00000183982 Mir6346 miRNA Interval_149999 chr7 104465131 104465842 + 0 NA promoter-TSS (ENSMUSG00000030921.17) protein_coding-promoter-TSS (ENSMUSG00000030921.17) 17940 ENSMUSG00000057596.13 ENSMUSG00000057596 ENSMUST00000141063 Trim30d protein_coding Interval_20768 chr10 120864602 120865002 + 0 NA intron (ENSMUSG00000051236.13, intron 2 of 6) protein_coding-intron (ENSMUSG00000051236.13, intron 2 of 6) 7173 ENSMUSG00000087480.1 ENSMUSG00000087480 ENSMUST00000127564 Gm15910 antisense Interval_111507 chr4 22270788 22271314 + 0 NA Intergenic Intergenic -4782 ENSMUSG00000083376.1 ENSMUSG00000083376 ENSMUST00000121463 Gm11882 processed_pseudogene Interval_14934 chr10 41262140 41262459 + 0 NA intron (ENSMUSG00000038417.4, intron 10 of 22) protein_coding-intron (ENSMUSG00000038417.4, intron 10 of 22) 40961 ENSMUSG00000038417.4 ENSMUSG00000038417 ENSMUST00000043814 Fig4 protein_coding Interval_170570 chr9 108759133 108760548 + 0 NA Intergenic Intergenic -20982 ENSMUSG00000065674.1 ENSMUSG00000065674 ENSMUST00000083740 Gm24259 snRNA Interval_77187 chr17 87206718 87207163 + 0 NA Intergenic Intergenic -11998 ENSMUSG00000117384.1 ENSMUSG00000117384 ENSMUST00000234580 C330024C12Rik lincRNA Interval_64359 chr16 10802492 10803007 + 0 NA intron (ENSMUSG00000116038.1, intron 2 of 2) protein_coding-intron (ENSMUSG00000022501.6, intron 1 of 2) 1368 ENSMUSG00000071671.5 ENSMUSG00000071671 ENSMUST00000096279 Gm10343 processed_pseudogene Interval_159863 chr8 104427505 104427712 + 0 NA intron (ENSMUSG00000035770.8, intron 7 of 13) protein_coding-intron (ENSMUSG00000035770.8, intron 7 of 12) -10652 ENSMUSG00000110689.1 ENSMUSG00000110689 ENSMUST00000211988 Gm45731 TEC Interval_27456 chr11 67949585 67949910 + 0 NA intron (ENSMUSG00000020904.11, intron 3 of 7) protein_coding-intron (ENSMUSG00000020904.11, intron 3 of 13) -4278 ENSMUSG00000020904.11 ENSMUSG00000020904 ENSMUST00000126766 Cfap52 protein_coding Interval_150108 chr7 106644166 106647061 + 0 NA Intergenic Intergenic 34971 ENSMUSG00000051680.3 ENSMUSG00000051680 ENSMUST00000057817 Olfr693 protein_coding Interval_160313 chr8 108101081 108101307 + 0 NA intron (ENSMUSG00000038872.10, intron 2 of 4) protein_coding-intron (ENSMUSG00000038872.10, intron 1 of 15) 106635 ENSMUSG00000038872.10 ENSMUSG00000038872 ENSMUST00000043896 Zfhx3 protein_coding Interval_10672 chr1 172594431 172594764 + 0 NA Intergenic Intergenic -4148 ENSMUSG00000053318.7 ENSMUSG00000053318 ENSMUST00000193843 Slamf8 protein_coding Interval_83672 chr19 3623491 3624413 + 0 NA intron (ENSMUSG00000024913.16, intron 8 of 22) protein_coding-intron (ENSMUSG00000024913.16, intron 7 of 22) -48230 ENSMUSG00000024908.15 ENSMUSG00000024908 ENSMUST00000226109 Ppp6r3 protein_coding Interval_143698 chr7 15800555 15800767 + 0 NA Intergenic Intergenic -12501 ENSMUSG00000105410.1 ENSMUSG00000105410 ENSMUST00000197059 Gtpbp4-ps7 processed_pseudogene Interval_46492 chr13 66575949 66577115 + 0 NA TTS (ENSMUSG00000114426.1) processed_pseudogene-TTS (ENSMUSG00000114426.1) 3611 ENSMUSG00000114426.1 ENSMUSG00000114426 ENSMUST00000224484 Gm10769 processed_pseudogene Interval_148873 chr7 89516925 89518411 + 0 NA promoter-TSS (ENSMUSG00000039405.7) protein_coding-promoter-TSS (ENSMUSG00000039405.7) 202 ENSMUSG00000039405.7 ENSMUSG00000039405 ENSMUST00000208903 Prss23 protein_coding Interval_64559 chr16 13321116 13321415 + 0 NA intron (ENSMUSG00000009569.14, intron 2 of 4) protein_coding-intron (ENSMUSG00000009569.14, intron 2 of 16) -37156 ENSMUSG00000009569.14 ENSMUSG00000009569 ENSMUST00000149359 Mrtfb protein_coding Interval_59945 chr15 62136790 62137411 + 0 NA intron (ENSMUSG00000097039.8, intron 2 of 6) lincRNA-intron (ENSMUSG00000097039.8, intron 2 of 8) 29913 ENSMUSG00000099295.1 ENSMUSG00000099295 ENSMUST00000183721 Gm27718 misc_RNA Interval_11604 chr1 183234083 183234368 + 0 NA Intergenic Intergenic -12735 ENSMUSG00000030768.12 ENSMUSG00000030768 ENSMUST00000194033 Disp1 protein_coding Interval_171836 chr9 121621812 121622127 + 0 NA intron (ENSMUSG00000032530.14, intron 1 of 5) protein_coding-intron (ENSMUSG00000032530.14, intron 1 of 5) 9401 ENSMUSG00000111844.1 ENSMUSG00000111844 ENSMUST00000214838 Gm47097 TEC Interval_58862 chr15 39311400 39311888 + 0 NA intron (ENSMUSG00000037386.16, intron 2 of 25) protein_coding-intron (ENSMUSG00000037386.16, intron 2 of 26) -3066 ENSMUSG00000095297.1 ENSMUSG00000095297 ENSMUST00000102078 Gm25381 miRNA Interval_125351 chr5 66367633 66367977 + 0 NA intron (ENSMUSG00000029207.16, intron 5 of 12) protein_coding-intron (ENSMUSG00000029207.16, intron 9 of 17) 10887 ENSMUSG00000106910.1 ENSMUSG00000106910 ENSMUST00000202238 Gm16273 processed_pseudogene Interval_89115 chr2 16702266 16702501 + 0 NA intron (ENSMUSG00000026748.13, intron 5 of 8) protein_coding-intron (ENSMUSG00000026748.13, intron 9 of 13) 63687 ENSMUSG00000026748.13 ENSMUSG00000026748 ENSMUST00000126173 Plxdc2 protein_coding Interval_121729 chr5 5845557 5845987 + 0 NA Intergenic Intergenic 47575 ENSMUSG00000104952.1 ENSMUSG00000104952 ENSMUST00000198061 Gm38697 processed_pseudogene Interval_51716 chr14 31609438 31610107 + 0 NA intron (ENSMUSG00000021884.18, intron 14 of 14) protein_coding-intron (ENSMUSG00000021884.18, intron 16 of 16) 31106 ENSMUSG00000115022.1 ENSMUSG00000115022 ENSMUST00000167175 Gm49387 protein_coding Interval_83351 chr18 84512543 84512767 + 0 NA intron (ENSMUSG00000048410.17, intron 2 of 2) protein_coding-intron (ENSMUSG00000048410.17, intron 2 of 2) -77720 ENSMUSG00000048410.17 ENSMUSG00000048410 ENSMUST00000182297 Zfp407 protein_coding Interval_24650 chr11 35641235 35641444 + 0 NA intron (ENSMUSG00000056427.10, intron 20 of 35) protein_coding-intron (ENSMUSG00000056427.10, intron 20 of 35) 24523 ENSMUSG00000065583.1 ENSMUSG00000065583 ENSMUST00000083649 Mir218-2 miRNA Interval_131230 chr5 135920815 135921072 + 0 NA intron (ENSMUSG00000051391.9, intron 1 of 2) protein_coding-intron (ENSMUSG00000051391.9, intron 1 of 1) 13611 ENSMUSG00000051391.9 ENSMUSG00000051391 ENSMUST00000126192 Ywhag protein_coding Interval_32358 chr11 107140519 107141964 + 0 NA Intergenic Intergenic -16167 ENSMUSG00000087596.1 ENSMUSG00000087596 ENSMUST00000129501 Gm11715 antisense Interval_94478 chr2 91515513 91515858 + 0 NA Intergenic Intergenic 8199 ENSMUSG00000081834.1 ENSMUSG00000081834 ENSMUST00000117149 Gm13770 processed_pseudogene Interval_150404 chr7 110173204 110174079 + 0 NA Intergenic Intergenic -48091 ENSMUSG00000031015.8 ENSMUSG00000031015 ENSMUST00000210513 Swap70 protein_coding Interval_112193 chr4 35506936 35507237 + 0 NA Intergenic Intergenic 70872 ENSMUSG00000083851.1 ENSMUSG00000083851 ENSMUST00000117931 Gm12365 processed_pseudogene Interval_6597 chr1 118040014 118040220 + 0 NA promoter-TSS (ENSMUSG00000101363.1) processed_pseudogene-promoter-TSS (ENSMUSG00000101363.1) -532 ENSMUSG00000101363.1 ENSMUSG00000101363 ENSMUST00000190923 Gm29490 processed_pseudogene Interval_173970 chrX 119206216 119206681 + 0 NA Intergenic Intergenic -206804 ENSMUSG00000081587.1 ENSMUSG00000081587 ENSMUST00000120650 Gm14926 processed_pseudogene Interval_54495 chr14 70230724 70231064 + 0 NA intron (ENSMUSG00000022092.11, intron 10 of 14) protein_coding-intron (ENSMUSG00000022092.11, intron 10 of 13) 6675 ENSMUSG00000115645.1 ENSMUSG00000115645 ENSMUST00000227159 Gm49288 processed_pseudogene Interval_86594 chr19 41939749 41940274 + 0 NA promoter-TSS (ENSMUSG00000025157.8) protein_coding-promoter-TSS (ENSMUSG00000025157.8) 2343 ENSMUSG00000025157.8 ENSMUSG00000025157 ENSMUST00000223802 Zdhhc16 protein_coding Interval_163678 chr9 24119199 24119654 + 0 NA intron (ENSMUSG00000043659.11, intron 2 of 5) protein_coding-intron (ENSMUSG00000043659.11, intron 2 of 9) -27524 ENSMUSG00000111135.1 ENSMUSG00000111135 ENSMUST00000213615 Gm47670 processed_pseudogene Interval_111811 chr4 30780490 30780927 + 0 NA intron (ENSMUSG00000085522.1, intron 5 of 6) lincRNA-intron (ENSMUSG00000085522.1, intron 5 of 6) -78173 ENSMUSG00000082949.1 ENSMUSG00000082949 ENSMUST00000118491 Gm11920 processed_pseudogene Interval_128716 chr5 114897159 114897652 + 0 NA promoter-TSS (ENSMUSG00000029561.17) protein_coding-promoter-TSS (ENSMUSG00000029561.17) -127 ENSMUSG00000029561.17 ENSMUSG00000029561 ENSMUST00000129707 Oasl2 protein_coding Interval_153524 chr8 3105719 3106970 + 0 NA TTS (ENSMUSG00000108971.1) processed_pseudogene-TTS (ENSMUSG00000108971.1) 2065 ENSMUSG00000108971.1 ENSMUSG00000108971 ENSMUST00000209001 Gm18210 processed_pseudogene Interval_45148 chr13 52730124 52730880 + 0 NA exon (ENSMUSG00000113737.1, exon 3 of 3) lincRNA-exon (ENSMUSG00000113737.1, exon 3 of 3) 26703 ENSMUSG00000113737.1 ENSMUSG00000113737 ENSMUST00000223209 BB123696 lincRNA Interval_54597 chr14 70959346 70959869 + 0 NA intron (ENSMUSG00000022103.10, intron 1 of 6) protein_coding-intron (ENSMUSG00000022103.10, intron 4 of 8) 69079 ENSMUSG00000022103.10 ENSMUSG00000022103 ENSMUST00000227633 Gfra2 protein_coding Interval_174060 chrX 133897806 133898486 + 0 NA promoter-TSS (ENSMUSG00000067377.12) protein_coding-promoter-TSS (ENSMUSG00000067377.12) -33 ENSMUSG00000067377.12 ENSMUSG00000067377 ENSMUST00000177468 Tspan6 protein_coding Interval_88867 chr2 11841111 11841535 + 0 NA Intergenic Intergenic 58034 ENSMUSG00000047909.11 ENSMUSG00000047909 ENSMUST00000142622 Ankrd16 protein_coding Interval_153728 chr8 5441622 5442964 + 0 NA Intergenic Intergenic -1303 ENSMUSG00000109313.1 ENSMUSG00000109313 ENSMUST00000208141 Gm44693 lincRNA Interval_119809 chr4 140138279 140139329 + 0 NA intron (ENSMUSG00000040972.8, intron 2 of 9) protein_coding-intron (ENSMUSG00000040972.8, intron 2 of 9) -4069 ENSMUSG00000086164.1 ENSMUSG00000086164 ENSMUST00000137283 Gm13029 antisense Interval_47594 chr13 89703175 89703708 + 0 NA exon (ENSMUSG00000021614.16, exon 7 of 14) protein_coding-exon (ENSMUSG00000021614.16, exon 7 of 14) -36023 ENSMUSG00000089940.1 ENSMUSG00000089940 ENSMUST00000161917 Gm4117 antisense Interval_66995 chr16 39159078 39159620 + 0 NA Intergenic Intergenic 29557 ENSMUSG00000116965.1 ENSMUSG00000116965 ENSMUST00000231748 Gm36742 lincRNA Interval_109020 chr3 135206136 135206334 + 0 NA Intergenic Intergenic -2752 ENSMUSG00000106079.1 ENSMUSG00000106079 ENSMUST00000199682 Gm43033 processed_pseudogene Interval_155277 chr8 30415982 30416219 + 0 NA Intergenic Intergenic 26124 ENSMUSG00000110006.1 ENSMUSG00000110006 ENSMUST00000210084 Gm45490 lincRNA Interval_85024 chr19 21636885 21637144 + 0 NA intron (ENSMUSG00000035171.9, intron 1 of 5) protein_coding-intron (ENSMUSG00000035171.9, intron 1 of 3) 15596 ENSMUSG00000035171.9 ENSMUSG00000035171 ENSMUST00000178781 1110059E24Rik protein_coding Interval_156471 chr8 48500393 48500781 + 0 NA intron (ENSMUSG00000031561.16, intron 2 of 26) protein_coding-intron (ENSMUSG00000031561.16, intron 2 of 28) 54726 ENSMUSG00000031561.16 ENSMUSG00000031561 ENSMUST00000211812 Tenm3 protein_coding Interval_88150 chr19 59831828 59832162 + 0 NA Intergenic Intergenic 69067 ENSMUSG00000090965.1 ENSMUSG00000090965 ENSMUST00000164379 Gm17203 lincRNA Interval_89093 chr2 16234854 16235115 + 0 NA intron (ENSMUSG00000075520.5, intron 37 of 38) protein_coding-intron (ENSMUSG00000075520.5, intron 37 of 38) -211559 ENSMUSG00000103865.1 ENSMUSG00000103865 ENSMUST00000193596 Gm37416 TEC Interval_71115 chr17 18607314 18608503 + 0 NA intron (ENSMUSG00000091679.9, intron 6 of 6) protein_coding-intron (ENSMUSG00000091679.9, intron 6 of 6) 34757 ENSMUSG00000091679.9 ENSMUSG00000091679 ENSMUST00000165692 Vmn2r96 protein_coding Interval_1291 chr1 19225920 19227097 + 0 NA exon (ENSMUSG00000025927.13, exon 4 of 7) protein_coding-exon (ENSMUSG00000025927.13, exon 4 of 7) 14202 ENSMUSG00000025927.13 ENSMUSG00000025927 ENSMUST00000186972 Tfap2b protein_coding Interval_42859 chr13 20489047 20490134 + 0 NA intron (ENSMUSG00000041112.17, intron 1 of 4) protein_coding-intron (ENSMUSG00000041112.17, intron 16 of 21) -10298 ENSMUSG00000113183.1 ENSMUSG00000113183 ENSMUST00000222966 Gm47664 sense_intronic Interval_28952 chr11 79527399 79527700 + 0 NA TTS (ENSMUSG00000078771.10) protein_coding-TTS (ENSMUSG00000078771.10) 3040 ENSMUSG00000070354.13 ENSMUSG00000070354 ENSMUST00000170422 Evi2 protein_coding Interval_73251 chr17 35782336 35783096 + 0 NA Intergenic Intergenic 10266 ENSMUSG00000092171.1 ENSMUSG00000092171 ENSMUST00000172874 4833427F10Rik lincRNA Interval_165140 chr9 44771520 44773513 + 0 NA promoter-TSS (ENSMUSG00000002031.13) protein_coding-promoter-TSS (ENSMUSG00000002031.13) -493 ENSMUSG00000002031.13 ENSMUSG00000002031 ENSMUST00000149020 Ift46 protein_coding Interval_24149 chr11 30743658 30744610 + 0 NA Intergenic Intergenic -6698 ENSMUSG00000087474.1 ENSMUSG00000087474 ENSMUST00000150255 Gm12100 processed_transcript Interval_174314 chrX 144332702 144333557 + 0 NA intron (ENSMUSG00000041718.16, intron 3 of 21) protein_coding-intron (ENSMUSG00000041718.16, intron 3 of 6) -11874 ENSMUSG00000080922.1 ENSMUSG00000080922 ENSMUST00000121333 Gm2214 processed_pseudogene Interval_9438 chr1 157091589 157092775 + 0 NA Intergenic Intergenic 16467 ENSMUSG00000026592.13 ENSMUSG00000026592 ENSMUST00000148649 Tex35 protein_coding Interval_69911 chr17 3137930 3138655 + 0 NA intron (ENSMUSG00000046201.9, intron 2 of 4) protein_coding-intron (ENSMUSG00000046201.9, intron 1 of 19) -7780 ENSMUSG00000116941.1 ENSMUSG00000116941 ENSMUST00000232579 Gm46578 processed_pseudogene Interval_127631 chr5 105959413 105959670 + 0 NA Intergenic Intergenic 21641 ENSMUSG00000105129.1 ENSMUSG00000105129 ENSMUST00000199576 Gm19566 processed_pseudogene Interval_41306 chr12 112613488 112613910 + 0 NA intron (ENSMUSG00000037679.9, intron 22 of 22) protein_coding-intron (ENSMUSG00000037679.9, intron 22 of 22) -6378 ENSMUSG00000011148.14 ENSMUSG00000011148 ENSMUST00000221720 Adssl1 protein_coding Interval_58110 chr15 27994805 27996035 + 0 NA promoter-TSS (ENSMUSG00000022263.10) protein_coding-promoter-TSS (ENSMUSG00000022263.10) -57 ENSMUSG00000022263.10 ENSMUSG00000022263 ENSMUST00000228950 Trio protein_coding Interval_103702 chr3 51731841 51732136 + 0 NA intron (ENSMUSG00000061143.15, intron 2 of 4) protein_coding-intron (ENSMUSG00000061143.15, intron 1 of 3) 30100 ENSMUSG00000102732.1 ENSMUSG00000102732 ENSMUST00000194588 Gm37342 TEC Interval_10792 chr1 174942485 174943622 + 0 NA Intergenic Intergenic -21234 ENSMUSG00000050069.3 ENSMUSG00000050069 ENSMUST00000055294 Grem2 protein_coding Interval_115438 chr4 98938407 98938915 + 0 NA intron (ENSMUSG00000028556.15, intron 7 of 7) protein_coding-intron (ENSMUSG00000028556.15, intron 48 of 48) 14697 ENSMUSG00000028560.11 ENSMUSG00000028560 ENSMUST00000125104 Usp1 protein_coding Interval_122752 chr5 25118290 25119315 + 0 NA Intergenic Intergenic -7333 ENSMUSG00000105763.1 ENSMUSG00000105763 ENSMUST00000198800 Gm19088 processed_pseudogene Interval_89522 chr2 21633820 21634179 + 0 NA intron (ENSMUSG00000045967.11, intron 4 of 7) protein_coding-intron (ENSMUSG00000045967.11, intron 4 of 10) 161056 ENSMUSG00000077572.1 ENSMUSG00000077572 ENSMUST00000104384 Gm24886 snoRNA Interval_96692 chr2 127216454 127217159 + 0 NA intron (ENSMUSG00000003660.10, intron 9 of 14) protein_coding-intron (ENSMUSG00000003660.10, intron 9 of 44) -8552 ENSMUSG00000044145.2 ENSMUSG00000044145 ENSMUST00000150956 1810024B03Rik protein_coding Interval_122057 chr5 14887133 14887828 + 0 NA Intergenic Intergenic 27373 ENSMUSG00000033219.8 ENSMUSG00000033219 ENSMUST00000154544 Gm9758 protein_coding Interval_123491 chr5 32900753 32900964 + 0 NA intron (ENSMUSG00000037426.18, intron 12 of 32) protein_coding-intron (ENSMUSG00000037426.18, intron 12 of 32) -12773 ENSMUSG00000089080.1 ENSMUSG00000089080 ENSMUST00000158455 Gm24003 snRNA Interval_96193 chr2 120458258 120458590 + 0 NA intron (ENSMUSG00000062646.12, intron 22 of 22) protein_coding-intron (ENSMUSG00000062646.12, intron 23 of 23) 2405 ENSMUSG00000118623.1 ENSMUSG00000118623 ENSMUST00000124129 AL935121.1 protein_coding Interval_86156 chr19 37144949 37146745 + 0 NA intron (ENSMUSG00000039652.16, intron 2 of 10) protein_coding-intron (ENSMUSG00000039652.16, intron 2 of 10) 3315 ENSMUSG00000080544.1 ENSMUSG00000080544 ENSMUST00000116894 Gm22714 ribozyme Interval_147527 chr7 68040380 68040710 + 0 NA intron (ENSMUSG00000005533.10, intron 2 of 20) protein_coding-intron (ENSMUSG00000005533.10, intron 2 of 20) -153960 ENSMUSG00000109152.1 ENSMUSG00000109152 ENSMUST00000208544 Gm44666 processed_pseudogene Interval_124816 chr5 55207830 55208973 + 0 NA Intergenic Intergenic 95180 ENSMUSG00000065795.1 ENSMUSG00000065795 ENSMUST00000083861 Gm25513 snRNA Interval_150318 chr7 109568455 109569734 + 0 NA TTS (ENSMUSG00000031024.13) protein_coding-TTS (ENSMUSG00000031024.13) 47659 ENSMUSG00000031024.13 ENSMUSG00000031024 ENSMUST00000208734 Denn2b protein_coding Interval_24370 chr11 32714157 32714586 + 0 NA intron (ENSMUSG00000020271.17, intron 4 of 4) protein_coding-intron (ENSMUSG00000020271.17, intron 4 of 13) 61268 ENSMUSG00000098054.1 ENSMUSG00000098054 ENSMUST00000182196 Gm8192 processed_pseudogene Interval_66557 chr16 35069616 35070691 + 0 NA intron (ENSMUSG00000035376.10, intron 1 of 3) protein_coding-intron (ENSMUSG00000035376.10, intron 3 of 6) 21538 ENSMUSG00000035376.10 ENSMUSG00000035376 ENSMUST00000231556 Hacd2 protein_coding Interval_376 chr1 4760563 4760769 + 0 NA Intergenic Intergenic -10465 ENSMUSG00000103922.1 ENSMUSG00000103922 ENSMUST00000193658 Gm6123 processed_pseudogene Interval_24390 chr11 32898923 32899113 + 0 NA Intergenic Intergenic -11355 ENSMUSG00000081254.1 ENSMUSG00000081254 ENSMUST00000117772 Gm12112 processed_pseudogene Interval_158819 chr8 86864562 86864997 + 0 NA intron (ENSMUSG00000031652.11, intron 1 of 6) protein_coding-intron (ENSMUSG00000031652.11, intron 1 of 6) -12359 ENSMUSG00000031652.11 ENSMUSG00000031652 ENSMUST00000210029 N4bp1 protein_coding Interval_149135 chr7 94455759 94456501 + 0 NA intron (ENSMUSG00000108532.1, intron 2 of 2) lincRNA-intron (ENSMUSG00000108532.1, intron 2 of 2) -19450 ENSMUSG00000108516.1 ENSMUSG00000108516 ENSMUST00000205948 Gm44602 processed_pseudogene Interval_22633 chr11 12409516 12409882 + 0 NA intron (ENSMUSG00000020173.17, intron 1 of 11) protein_coding-intron (ENSMUSG00000020173.17, intron 1 of 14) 2445 ENSMUSG00000020173.17 ENSMUSG00000020173 ENSMUST00000146067 Cobl protein_coding Interval_165283 chr9 46012159 46013532 + 0 NA promoter-TSS (ENSMUSG00000034135.15) protein_coding-promoter-TSS (ENSMUSG00000034135.15) -28062 ENSMUSG00000003131.7 ENSMUSG00000003131 ENSMUST00000214996 Pafah1b2 protein_coding Interval_150457 chr7 110781405 110782457 + 0 NA intron (ENSMUSG00000005686.17, intron 2 of 2) protein_coding-intron (ENSMUSG00000005686.17, intron 2 of 14) -12586 ENSMUSG00000110062.1 ENSMUSG00000110062 ENSMUST00000209731 B430319F04Rik TEC Interval_49444 chr13 112057673 112059286 + 0 NA Intergenic Intergenic 52977 ENSMUSG00000086092.1 ENSMUSG00000086092 ENSMUST00000156109 Gm15323 lincRNA Interval_40488 chr12 105144657 105146944 + 0 NA promoter-TSS (ENSMUSG00000060863.12) protein_coding-promoter-TSS (ENSMUSG00000060863.12) -1219 ENSMUSG00000060863.12 ENSMUSG00000060863 ENSMUST00000081379 Tcl1b2 protein_coding Interval_110339 chr3 157107988 157108223 + 0 NA intron (ENSMUSG00000040037.13, intron 4 of 6) protein_coding-intron (ENSMUSG00000040037.13, intron 4 of 6) 36361 ENSMUSG00000105803.1 ENSMUSG00000105803 ENSMUST00000196666 Gm43526 TEC Interval_97188 chr2 132133275 132134087 + 0 NA intron (ENSMUSG00000027340.15, intron 1 of 6) protein_coding-intron (ENSMUSG00000027340.15, intron 1 of 15) -10852 ENSMUSG00000086756.1 ENSMUSG00000086756 ENSMUST00000131603 Gm14051 antisense Interval_132040 chr5 142439933 142441617 + 0 NA intron (ENSMUSG00000056493.9, intron 2 of 8) protein_coding-intron (ENSMUSG00000056493.9, intron 2 of 8) -23169 ENSMUSG00000039623.13 ENSMUSG00000039623 ENSMUST00000197293 Ap5z1 protein_coding Interval_55079 chr14 77786703 77787487 + 0 NA intron (ENSMUSG00000115257.1, intron 2 of 4) lincRNA-intron (ENSMUSG00000115257.1, intron 2 of 4) 6121 ENSMUSG00000115257.1 ENSMUSG00000115257 ENSMUST00000227970 Gm30467 lincRNA Interval_158161 chr8 79352017 79352268 + 0 NA intron (ENSMUSG00000031681.16, intron 2 of 2) protein_coding-intron (ENSMUSG00000031681.16, intron 4 of 6) 4536 ENSMUSG00000031681.16 ENSMUSG00000031681 ENSMUST00000066081 Smad1 protein_coding Interval_99152 chr2 157521989 157523015 + 0 NA promoter-TSS (ENSMUSG00000081740.3) processed_pseudogene-promoter-TSS (ENSMUSG00000081740.3) -474 ENSMUSG00000081740.3 ENSMUSG00000081740 ENSMUST00000117142 Gm14279 processed_pseudogene Interval_56250 chr14 115015428 115015718 + 0 NA Intergenic Intergenic -27306 ENSMUSG00000089726.2 ENSMUSG00000089726 ENSMUST00000134140 Mir17hg lincRNA Interval_11467 chr1 182044729 182045481 + 0 NA Intergenic Intergenic -26298 ENSMUSG00000103379.1 ENSMUSG00000103379 ENSMUST00000193768 Gm37177 processed_pseudogene Interval_165073 chr9 44304655 44305828 + 0 NA intron (ENSMUSG00000032119.5, intron 1 of 3) protein_coding-intron (ENSMUSG00000032119.5, intron 1 of 9) 404 ENSMUSG00000032119.5 ENSMUSG00000032119 ENSMUST00000217605 Hinfp protein_coding Interval_114563 chr4 82498051 82498590 + 0 NA TTS (ENSMUSG00000008575.17) protein_coding-TTS (ENSMUSG00000008575.17) -9696 ENSMUSG00000087413.1 ENSMUSG00000087413 ENSMUST00000139835 Gm11266 antisense Interval_116902 chr4 118096665 118097811 + 0 NA intron (ENSMUSG00000028538.12, intron 2 of 11) protein_coding-intron (ENSMUSG00000028538.12, intron 2 of 11) 64419 ENSMUSG00000033326.15 ENSMUSG00000033326 ENSMUST00000164821 Kdm4a protein_coding Interval_133897 chr6 14522936 14523344 + 0 NA Intergenic Intergenic 47885 ENSMUSG00000107657.1 ENSMUSG00000107657 ENSMUST00000204864 Gm44446 processed_pseudogene Interval_107420 chr3 107483442 107483690 + 0 NA exon (ENSMUSG00000027894.14, exon 7 of 7) protein_coding-exon (ENSMUSG00000027894.14, exon 7 of 7) -14861 ENSMUSG00000027894.14 ENSMUSG00000027894 ENSMUST00000166736 Slc6a17 protein_coding Interval_100021 chr2 166573087 166573375 + 0 NA promoter-TSS (ENSMUSG00000039621.13) protein_coding-promoter-TSS (ENSMUSG00000039621.13) -64057 ENSMUSG00000085682.2 ENSMUSG00000085682 ENSMUST00000123480 Gm14267 transcribed_processed_pseudogene Interval_50903 chr14 20682539 20683402 + 0 NA TTS (ENSMUSG00000039367.11) protein_coding-TTS (ENSMUSG00000039367.11) 150 ENSMUSG00000039367.11 ENSMUSG00000039367 ENSMUST00000225903 Sec24c protein_coding Interval_6318 chr1 105839218 105839927 + 0 NA intron (ENSMUSG00000026321.7, intron 9 of 9) protein_coding-intron (ENSMUSG00000026321.7, intron 9 of 9) 51440 ENSMUSG00000102690.1 ENSMUSG00000102690 ENSMUST00000194221 Gm37779 TEC Interval_152959 chr7 140061014 140063348 + 0 NA Intergenic Intergenic -13093 ENSMUSG00000025469.10 ENSMUSG00000025469 ENSMUST00000172775 Msx3 protein_coding Interval_93304 chr2 71800946 71802129 + 0 NA intron (ENSMUSG00000027111.16, intron 1 of 25) protein_coding-intron (ENSMUSG00000027111.16, intron 1 of 25) 14398 ENSMUSG00000027111.16 ENSMUSG00000027111 ENSMUST00000139760 Itga6 protein_coding Interval_94183 chr2 84896754 84896980 + 0 NA Intergenic Intergenic -10157 ENSMUSG00000050896.12 ENSMUSG00000050896 ENSMUST00000151759 Rtn4rl2 protein_coding Interval_168251 chr9 78202282 78203448 + 0 NA intron (ENSMUSG00000032348.6, intron 4 of 5) protein_coding-intron (ENSMUSG00000032348.6, intron 3 of 6) 11980 ENSMUSG00000111015.1 ENSMUSG00000111015 ENSMUST00000216513 Gm3126 processed_pseudogene Interval_153454 chr7 144895593 144897421 + 0 NA promoter-TSS (ENSMUSG00000031073.6) protein_coding-promoter-TSS (ENSMUSG00000031073.6) -34 ENSMUSG00000031073.6 ENSMUSG00000031073 ENSMUST00000207229 Fgf15 protein_coding Interval_27924 chr11 70909711 70910839 + 0 NA promoter-TSS (ENSMUSG00000084139.1) processed_pseudogene-promoter-TSS (ENSMUSG00000084139.1) -630 ENSMUSG00000084139.1 ENSMUSG00000084139 ENSMUST00000121605 Gm12322 processed_pseudogene Interval_31688 chr11 102259732 102260219 + 0 NA intron (ENSMUSG00000034773.16, intron 3 of 4) protein_coding-intron (ENSMUSG00000034773.16, intron 6 of 9) 4319 ENSMUSG00000034773.16 ENSMUSG00000034773 ENSMUST00000140040 Hrob protein_coding Interval_145825 chr7 39639056 39639278 + 0 NA Intergenic Intergenic 8775 ENSMUSG00000070236.1 ENSMUSG00000070236 ENSMUST00000093724 Gm26327 snRNA Interval_19255 chr10 95825720 95825918 + 0 NA intron (ENSMUSG00000110353.1, intron 3 of 3) protein_coding-intron (ENSMUSG00000110353.1, intron 1 of 1) -7924 ENSMUSG00000112771.1 ENSMUSG00000112771 ENSMUST00000218099 Gm47718 lincRNA Interval_19237 chr10 95680543 95681505 + 0 NA Intergenic Intergenic -7635 ENSMUSG00000074780.2 ENSMUSG00000074780 ENSMUST00000099328 Anapc15-ps protein_coding Interval_106671 chr3 98354086 98354339 + 0 NA Intergenic Intergenic -20642 ENSMUSG00000053398.11 ENSMUSG00000053398 ENSMUST00000148488 Phgdh protein_coding Interval_95607 chr2 112759699 112760069 + 0 NA intron (ENSMUSG00000057378.15, intron 52 of 103) protein_coding-intron (ENSMUSG00000057378.15, intron 52 of 102) -103336 ENSMUSG00000057378.15 ENSMUSG00000057378 ENSMUST00000208135 Ryr3 protein_coding Interval_149204 chr7 96266807 96268489 + 0 NA intron (ENSMUSG00000048078.16, intron 1 of 32) protein_coding-intron (ENSMUSG00000048078.16, intron 1 of 32) 18224 ENSMUSG00000076143.1 ENSMUSG00000076143 ENSMUST00000102189 Mir708 miRNA Interval_83598 chr18 90460720 90461909 + 0 NA intron (ENSMUSG00000117805.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000117805.1, intron 1 of 1) 22146 ENSMUSG00000117805.1 ENSMUSG00000117805 ENSMUST00000237124 Gm18280 lincRNA Interval_54691 chr14 73370770 73371328 + 0 NA intron (ENSMUSG00000022108.8, intron 1 of 5) protein_coding-intron (ENSMUSG00000022108.8, intron 1 of 5) -1925 ENSMUSG00000022108.8 ENSMUSG00000022108 ENSMUST00000228637 Itm2b protein_coding Interval_14889 chr10 40868212 40868500 + 0 NA intron (ENSMUSG00000038446.8, intron 1 of 8) protein_coding-intron (ENSMUSG00000038446.8, intron 1 of 14) 7526 ENSMUSG00000089186.1 ENSMUSG00000089186 ENSMUST00000158561 Gm22948 misc_RNA Interval_69340 chr16 92336125 92336781 + 0 NA Intergenic Intergenic -7199 ENSMUSG00000116967.1 ENSMUSG00000116967 ENSMUST00000231670 Smim34 processed_pseudogene Interval_3857 chr1 63755290 63755490 + 0 NA TTS (ENSMUSG00000025962.15) protein_coding-TTS (ENSMUSG00000025962.15) 13877 ENSMUSG00000025961.1 ENSMUSG00000025961 ENSMUST00000027102 4933402D24Rik protein_coding Interval_120240 chr4 144793024 144793240 + 0 NA TTS (ENSMUSG00000083998.1) processed_pseudogene-TTS (ENSMUSG00000083998.1) 1295 ENSMUSG00000083998.1 ENSMUSG00000083998 ENSMUST00000117259 Prdx2-ps2 processed_pseudogene Interval_115947 chr4 106492177 106493882 + 0 NA promoter-TSS (ENSMUSG00000025418.7) protein_coding-promoter-TSS (ENSMUSG00000025418.7) -746 ENSMUSG00000025418.7 ENSMUSG00000025418 ENSMUST00000054472 Bsnd protein_coding Interval_111305 chr4 18210376 18210749 + 0 NA Intergenic Intergenic 17031 ENSMUSG00000083150.1 ENSMUSG00000083150 ENSMUST00000120806 Gm11852 processed_pseudogene Interval_129667 chr5 121627899 121628392 + 0 NA intron (ENSMUSG00000029456.12, intron 6 of 10) protein_coding-intron (ENSMUSG00000029456.12, intron 16 of 20) 4634 ENSMUSG00000029456.12 ENSMUSG00000029456 ENSMUST00000137231 Acad10 protein_coding Interval_130167 chr5 124646451 124647439 + 0 NA intron (ENSMUSG00000038023.12, intron 10 of 19) protein_coding-intron (ENSMUSG00000038023.12, intron 9 of 19) 18369 ENSMUSG00000038023.12 ENSMUSG00000038023 ENSMUST00000197161 Atp6v0a2 protein_coding Interval_154014 chr8 11885831 11887369 + 0 NA intron (ENSMUSG00000109772.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000109772.1, intron 1 of 1) 12441 ENSMUSG00000109772.1 ENSMUSG00000109772 ENSMUST00000210446 Gm39132 lincRNA Interval_77653 chr17 93605288 93605839 + 0 NA Intergenic Intergenic 75102 ENSMUSG00000117514.1 ENSMUSG00000117514 ENSMUST00000234106 Gm50002 processed_pseudogene Interval_36595 chr12 51058197 51059047 + 0 NA intron (ENSMUSG00000111986.1, intron 4 of 4) lincRNA-intron (ENSMUSG00000111986.1, intron 4 of 4) -27065 ENSMUSG00000088966.1 ENSMUSG00000088966 ENSMUST00000158341 Gm22088 snoRNA Interval_82001 chr18 67050221 67050551 + 0 NA Intergenic Intergenic -16192 ENSMUSG00000117815.1 ENSMUSG00000117815 ENSMUST00000237332 Gm50166 lincRNA Interval_91047 chr2 34667906 34669770 + 0 NA Intergenic Intergenic -18598 ENSMUSG00000087635.3 ENSMUSG00000087635 ENSMUST00000117516 Gm13414 processed_pseudogene Interval_124740 chr5 53624469 53624852 + 0 NA promoter-TSS (ENSMUSG00000039191.12) protein_coding-promoter-TSS (ENSMUSG00000039191.12) -13972 ENSMUSG00000039191.12 ENSMUSG00000039191 ENSMUST00000202092 Rbpj protein_coding Interval_73218 chr17 35635339 35636794 + 0 NA exon (ENSMUSG00000073408.2, exon 3 of 3) protein_coding-exon (ENSMUSG00000073408.2, exon 3 of 3) 7629 ENSMUSG00000073408.2 ENSMUSG00000073408 ENSMUST00000095467 Mucl3 protein_coding Interval_67847 chr16 57857621 57859192 + 0 NA intron (ENSMUSG00000116920.1, intron 1 of 3) lincRNA-intron (ENSMUSG00000116920.1, intron 1 of 3) 25733 ENSMUSG00000095926.1 ENSMUSG00000095926 ENSMUST00000157878 Gm24039 snoRNA Interval_79378 chr18 31441641 31442116 + 0 NA intron (ENSMUSG00000024261.6, intron 2 of 3) protein_coding-intron (ENSMUSG00000024261.6, intron 2 of 3) 1560 ENSMUSG00000096934.1 ENSMUSG00000096934 ENSMUST00000181067 Gm26658 antisense Interval_115249 chr4 94862774 94864215 + 0 NA intron (ENSMUSG00000006386.15, intron 18 of 22) protein_coding-intron (ENSMUSG00000006386.15, intron 18 of 22) 58651 ENSMUSG00000006386.15 ENSMUSG00000006386 ENSMUST00000131958 Tek protein_coding Interval_39773 chr12 98084388 98084580 + 0 NA intron (ENSMUSG00000112812.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000112812.1, intron 1 of 2) 15871 ENSMUSG00000112086.1 ENSMUSG00000112086 ENSMUST00000220437 Gm35412 processed_pseudogene Interval_164520 chr9 37665436 37665725 + 0 NA intron (ENSMUSG00000011118.4, intron 3 of 3) protein_coding-intron (ENSMUSG00000011118.4, intron 2 of 3) 3610 ENSMUSG00000011118.4 ENSMUSG00000011118 ENSMUST00000215047 Panx3 protein_coding Interval_44218 chr13 42328221 42329053 + 0 NA Intergenic Intergenic -23646 ENSMUSG00000113619.1 ENSMUSG00000113619 ENSMUST00000221433 Gm47118 antisense Interval_147857 chr7 74356697 74357324 + 0 NA intron (ENSMUSG00000025790.14, intron 2 of 2) protein_coding-intron (ENSMUSG00000025790.14, intron 3 of 9) -9779 ENSMUSG00000025790.14 ENSMUSG00000025790 ENSMUST00000129292 Slco3a1 protein_coding Interval_136648 chr6 56936665 56937101 + 0 NA intron (ENSMUSG00000071893.7, intron 4 of 4) protein_coding-intron (ENSMUSG00000071893.7, intron 4 of 4) 7941 ENSMUSG00000108021.1 ENSMUSG00000108021 ENSMUST00000204905 Gm44049 TEC Interval_48705 chr13 101732933 101733209 + 0 NA intron (ENSMUSG00000041417.15, intron 2 of 15) protein_coding-intron (ENSMUSG00000041417.15, intron 2 of 15) 18817 ENSMUSG00000104214.1 ENSMUSG00000104214 ENSMUST00000192073 Gm36638 TEC Interval_65009 chr16 17831746 17832030 + 0 NA Intergenic Intergenic -1680 ENSMUSG00000116652.2 ENSMUSG00000116652 ENSMUST00000235474 B830017H08Rik protein_coding Interval_168315 chr9 78629256 78630407 + 0 NA intron (ENSMUSG00000091147.1, intron 1 of 1) protein_coding-intron (ENSMUSG00000046186.8, intron 2 of 32) 297 ENSMUSG00000091147.1 ENSMUSG00000091147 ENSMUST00000171278 4921509A06Rik antisense Interval_150464 chr7 110891539 110891796 + 0 NA intron (ENSMUSG00000005611.15, intron 10 of 15) protein_coding-intron (ENSMUSG00000005611.15, intron 15 of 20) -13318 ENSMUSG00000087160.1 ENSMUSG00000087160 ENSMUST00000126011 Gm16336 antisense Interval_102493 chr3 27190043 27191865 + 0 NA intron (ENSMUSG00000027698.14, intron 1 of 3) protein_coding-intron (ENSMUSG00000027698.14, intron 1 of 4) 2513 ENSMUSG00000027698.14 ENSMUSG00000027698 ENSMUST00000140872 Nceh1 protein_coding Interval_160307 chr8 107944655 107945483 + 0 NA intron (ENSMUSG00000038872.10, intron 1 of 15) protein_coding-intron (ENSMUSG00000038872.10, intron 1 of 15) -49490 ENSMUSG00000038872.10 ENSMUSG00000038872 ENSMUST00000043896 Zfhx3 protein_coding Interval_107630 chr3 109025674 109025843 + 0 NA intron (ENSMUSG00000040339.10, intron 1 of 10) protein_coding-intron (ENSMUSG00000040339.10, intron 1 of 10) 1849 ENSMUSG00000040339.10 ENSMUSG00000040339 ENSMUST00000171143 Fam102b protein_coding Interval_15907 chr10 59132567 59132790 + 0 NA intron (ENSMUSG00000037990.18, intron 9 of 9) protein_coding-intron (ENSMUSG00000037990.18, intron 9 of 9) -63021 ENSMUSG00000088744.1 ENSMUSG00000088744 ENSMUST00000158119 Gm23223 snoRNA Interval_133443 chr6 5059541 5060287 + 0 NA intron (ENSMUSG00000032827.15, intron 3 of 17) protein_coding-intron (ENSMUSG00000032827.15, intron 4 of 15) 100931 ENSMUSG00000097396.1 ENSMUSG00000097396 ENSMUST00000180645 Gm26556 TEC Interval_96078 chr2 119642374 119642812 + 0 NA intron (ENSMUSG00000027306.15, intron 8 of 10) protein_coding-intron (ENSMUSG00000027306.15, intron 7 of 9) 11475 ENSMUSG00000064906.1 ENSMUSG00000064906 ENSMUST00000082972 n-R5s204 rRNA Interval_148288 chr7 80314459 80315079 + 0 NA TTS (ENSMUSG00000038930.11) protein_coding-TTS (ENSMUSG00000038930.11) 9365 ENSMUSG00000038930.11 ENSMUSG00000038930 ENSMUST00000155124 Rccd1 protein_coding Interval_92475 chr2 60010724 60011469 + 0 NA intron (ENSMUSG00000026987.16, intron 1 of 34) protein_coding-intron (ENSMUSG00000026987.16, intron 1 of 34) -18752 ENSMUSG00000081236.1 ENSMUSG00000081236 ENSMUST00000120482 Gm13574 processed_pseudogene Interval_10011 chr1 165018448 165019223 + 0 NA Intergenic Intergenic -5510 ENSMUSG00000080561.1 ENSMUSG00000080561 ENSMUST00000116911 Gm26042 miRNA Interval_107275 chr3 105164881 105165661 + 0 NA Intergenic Intergenic 98427 ENSMUSG00000051788.4 ENSMUSG00000051788 ENSMUST00000070584 4930564D02Rik protein_coding Interval_68512 chr16 78300930 78302945 + 0 NA intron (ENSMUSG00000022865.14, intron 2 of 3) protein_coding-intron (ENSMUSG00000022865.14, intron 1 of 6) -6950 ENSMUSG00000109841.2 ENSMUSG00000109841 ENSMUST00000210555 E330011O21Rik processed_transcript Interval_160438 chr8 109516069 109516633 + 0 NA intron (ENSMUSG00000031727.8, intron 4 of 19) protein_coding-intron (ENSMUSG00000031727.8, intron 5 of 20) 21307 ENSMUSG00000031727.8 ENSMUSG00000031727 ENSMUST00000212003 Pmfbp1 protein_coding Interval_129471 chr5 120425666 120426006 + 0 NA intron (ENSMUSG00000098649.2, intron 1 of 1) antisense-intron (ENSMUSG00000098649.2, intron 1 of 1) -5863 ENSMUSG00000029595.9 ENSMUSG00000029595 ENSMUST00000031591 Lhx5 protein_coding Interval_18678 chr10 89224387 89224792 + 0 NA intron (ENSMUSG00000035189.17, intron 3 of 6) protein_coding-intron (ENSMUSG00000035189.17, intron 1 of 7) 33001 ENSMUSG00000035189.17 ENSMUSG00000035189 ENSMUST00000180843 Ano4 protein_coding Interval_144639 chr7 27284662 27285988 + 0 NA Intergenic Intergenic -12933 ENSMUSG00000083622.1 ENSMUSG00000083622 ENSMUST00000122093 Gm15570 processed_pseudogene Interval_102994 chr3 34071393 34071618 + 0 NA exon (ENSMUSG00000105176.1, exon 1 of 1) TEC-exon (ENSMUSG00000105176.1, exon 1 of 1) 846 ENSMUSG00000105176.1 ENSMUSG00000105176 ENSMUST00000197014 Gm43668 TEC Interval_113834 chr4 59214819 59216403 + 0 NA intron (ENSMUSG00000028381.8, intron 5 of 8) protein_coding-intron (ENSMUSG00000028381.8, intron 5 of 8) 2955 ENSMUSG00000028381.8 ENSMUSG00000028381 ENSMUST00000155153 Ugcg protein_coding Interval_5634 chr1 90454374 90454566 + 0 NA promoter-TSS (ENSMUSG00000101997.1) lincRNA-promoter-TSS (ENSMUSG00000101997.1) 31 ENSMUSG00000101997.1 ENSMUSG00000101997 ENSMUST00000187630 Gm28722 lincRNA Interval_173767 chrX 103820495 103822765 + 0 NA exon (ENSMUSG00000033965.10, exon 1 of 6) protein_coding-exon (ENSMUSG00000033965.10, exon 1 of 6) 42937 ENSMUSG00000083605.1 ENSMUSG00000083605 ENSMUST00000117904 Gm14893 processed_pseudogene Interval_68816 chr16 87304988 87305589 + 0 NA Intergenic Intergenic -48955 ENSMUSG00000044442.11 ENSMUSG00000044442 ENSMUST00000118115 N6amt1 protein_coding Interval_85475 chr19 27072981 27073521 + 0 NA Intergenic Intergenic 29446 ENSMUSG00000118209.1 ENSMUSG00000118209 ENSMUST00000236708 Gm35438 lincRNA Interval_33495 chr11 116882567 116882832 + 0 NA Intergenic Intergenic 28621 ENSMUSG00000020818.16 ENSMUSG00000020818 ENSMUST00000134106 Mfsd11 protein_coding Interval_100081 chr2 166966491 166966688 + 0 NA intron (ENSMUSG00000039536.16, intron 1 of 11) protein_coding-intron (ENSMUSG00000039536.16, intron 1 of 11) -1873 ENSMUSG00000039536.16 ENSMUSG00000039536 ENSMUST00000130104 Stau1 protein_coding Interval_17765 chr10 79959599 79960727 + 0 NA promoter-TSS (ENSMUSG00000035754.8) protein_coding-promoter-TSS (ENSMUSG00000035754.8) 8 ENSMUSG00000035754.8 ENSMUSG00000035754 ENSMUST00000218515 Wdr18 protein_coding Interval_143406 chr7 6439799 6440856 + 0 NA exon (ENSMUSG00000045929.8, exon 5 of 5) protein_coding-exon (ENSMUSG00000045929.8, exon 5 of 5) 1639 ENSMUSG00000090824.2 ENSMUSG00000090824 ENSMUST00000168341 Olfr1344 protein_coding Interval_139568 chr6 101271553 101273807 + 0 NA intron (ENSMUSG00000035357.17, intron 3 of 3) protein_coding-intron (ENSMUSG00000035357.17, intron 3 of 9) 15830 ENSMUSG00000108076.1 ENSMUSG00000108076 ENSMUST00000203503 9530086O07Rik TEC Interval_49613 chr13 113556696 113556943 + 0 NA intron (ENSMUSG00000114715.1, intron 1 of 5) lincRNA-intron (ENSMUSG00000114715.1, intron 1 of 5) 10948 ENSMUSG00000114715.1 ENSMUSG00000114715 ENSMUST00000225395 Gm34471 lincRNA Interval_130372 chr5 126995608 126995959 + 0 NA Intergenic Intergenic -24444 ENSMUSG00000105782.1 ENSMUSG00000105782 ENSMUST00000197355 Gm42955 TEC Interval_130326 chr5 125772924 125773205 + 0 NA intron (ENSMUSG00000070498.3, intron 5 of 8) protein_coding-intron (ENSMUSG00000070498.3, intron 5 of 8) 75676 ENSMUSG00000091970.3 ENSMUSG00000091970 ENSMUST00000164138 Gm4868 processed_pseudogene Interval_166400 chr9 59009978 59010962 + 0 NA intron (ENSMUSG00000032340.8, intron 1 of 14) protein_coding-intron (ENSMUSG00000032340.8, intron 1 of 28) 25957 ENSMUSG00000032340.8 ENSMUSG00000032340 ENSMUST00000216964 Neo1 protein_coding Interval_40300 chr12 103320786 103321801 + 0 NA exon (ENSMUSG00000021200.14, exon 10 of 10) protein_coding-exon (ENSMUSG00000021200.14, exon 10 of 10) -6524 ENSMUSG00000100789.6 ENSMUSG00000100789 ENSMUST00000191414 Gm29508 antisense Interval_89959 chr2 26854309 26854806 + 0 NA intron (ENSMUSG00000015787.15, intron 1 of 5) protein_coding-intron (ENSMUSG00000015787.15, intron 1 of 5) 2241 ENSMUSG00000015787.15 ENSMUSG00000015787 ENSMUST00000102900 Abo protein_coding Interval_123886 chr5 36313425 36314466 + 0 NA intron (ENSMUSG00000029093.14, intron 1 of 7) protein_coding-intron (ENSMUSG00000029093.14, intron 1 of 26) 12375 ENSMUSG00000098884.1 ENSMUSG00000098884 ENSMUST00000184943 Mir7689 miRNA Interval_73407 chr17 37022987 37023363 + 0 NA promoter-TSS (ENSMUSG00000076439.12) protein_coding-promoter-TSS (ENSMUSG00000076439.12) 24 ENSMUSG00000076439.12 ENSMUSG00000076439 ENSMUST00000167275 Mog protein_coding Interval_40403 chr12 104664132 104664393 + 0 NA Intergenic Intergenic 57790 ENSMUSG00000041415.10 ENSMUSG00000041415 ENSMUST00000222002 Dicer1 protein_coding Interval_37034 chr12 56636771 56637730 + 0 NA Intergenic Intergenic 8266 ENSMUSG00000112618.1 ENSMUSG00000112618 ENSMUST00000218378 Gm48835 TEC Interval_167169 chr9 65779320 65780660 + 0 NA intron (ENSMUSG00000040524.9, intron 2 of 9) protein_coding-intron (ENSMUSG00000040524.9, intron 2 of 9) 17922 ENSMUSG00000040524.9 ENSMUSG00000040524 ENSMUST00000160747 Zfp609 protein_coding Interval_98010 chr2 146633598 146634173 + 0 NA Intergenic Intergenic 90954 ENSMUSG00000085796.1 ENSMUSG00000085796 ENSMUST00000147212 4933406D12Rik lincRNA Interval_59243 chr15 49556003 49556432 + 0 NA Intergenic Intergenic 18022 ENSMUSG00000065760.1 ENSMUSG00000065760 ENSMUST00000083826 Gm23848 snRNA Interval_17568 chr10 77818356 77818767 + 0 NA intron (ENSMUSG00000112600.1, intron 1 of 1) protein_coding-intron (ENSMUSG00000069581.12, intron 1 of 11) 3879 ENSMUSG00000112600.1 ENSMUSG00000112600 ENSMUST00000220393 Gm49918 protein_coding Interval_127200 chr5 101165470 101165719 + 0 NA Intergenic Intergenic -139984 ENSMUSG00000105965.1 ENSMUSG00000105965 ENSMUST00000197114 Cycs-ps2 processed_pseudogene Interval_108883 chr3 132971658 132971923 + 0 NA Intergenic Intergenic 31920 ENSMUSG00000089431.1 ENSMUSG00000089431 ENSMUST00000158806 Gm23196 snRNA Interval_140531 chr6 119337854 119339037 + 0 NA TTS (ENSMUSG00000041460.16) protein_coding-TTS (ENSMUSG00000041460.16) -9241 ENSMUSG00000055003.14 ENSMUSG00000055003 ENSMUST00000124192 Lrtm2 protein_coding Interval_53501 chr14 57889587 57890758 + 0 NA promoter-TSS (ENSMUSG00000021969.8) protein_coding-promoter-TSS (ENSMUSG00000021969.8) 50 ENSMUSG00000021969.8 ENSMUSG00000021969 ENSMUST00000225955 Zdhhc20 protein_coding Interval_10269 chr1 167715748 167716171 + 0 NA intron (ENSMUSG00000026686.14, intron 3 of 8) protein_coding-intron (ENSMUSG00000026686.14, intron 2 of 7) 26722 ENSMUSG00000026686.14 ENSMUSG00000026686 ENSMUST00000028003 Lmx1a protein_coding Interval_159075 chr8 89597173 89597637 + 0 NA Intergenic Intergenic -7864 ENSMUSG00000064758.1 ENSMUSG00000064758 ENSMUST00000082824 Gm26331 snRNA Interval_160973 chr8 116602212 116603065 + 0 NA intron (ENSMUSG00000031758.10, intron 2 of 6) protein_coding-intron (ENSMUSG00000031758.10, intron 2 of 6) 97664 ENSMUSG00000034467.7 ENSMUSG00000034467 ENSMUST00000078170 Dynlrb2 protein_coding Interval_62929 chr15 97972774 97973809 + 0 NA Intergenic Intergenic 9035 ENSMUSG00000052369.8 ENSMUSG00000052369 ENSMUST00000231079 Tmem106c protein_coding Interval_91363 chr2 38274264 38274633 + 0 NA intron (ENSMUSG00000035392.17, intron 1 of 9) protein_coding-intron (ENSMUSG00000035392.17, intron 1 of 21) -10859 ENSMUSG00000087294.2 ENSMUSG00000087294 ENSMUST00000132692 Gm13556 antisense Interval_128598 chr5 114223386 114223998 + 0 NA intron (ENSMUSG00000042010.16, intron 17 of 40) protein_coding-intron (ENSMUSG00000042010.16, intron 28 of 51) 14233 ENSMUSG00000084243.1 ENSMUSG00000084243 ENSMUST00000119639 Gm13784 processed_pseudogene Interval_87266 chr19 47305240 47305865 + 0 NA intron (ENSMUSG00000053617.12, intron 1 of 7) protein_coding-intron (ENSMUSG00000053617.12, intron 8 of 14) -31963 ENSMUSG00000098786.1 ENSMUSG00000098786 ENSMUST00000183658 Mir6995 miRNA Interval_156545 chr8 50651956 50652164 + 0 NA Intergenic Intergenic 88819 ENSMUSG00000087769.1 ENSMUSG00000087769 ENSMUST00000157144 Gm23986 snRNA Interval_61620 chr15 83003082 83003319 + 0 NA intron (ENSMUSG00000058099.16, intron 4 of 5) protein_coding-intron (ENSMUSG00000058099.16, intron 4 of 5) -15370 ENSMUSG00000100552.1 ENSMUSG00000100552 ENSMUST00000186748 Gm29019 lincRNA Interval_53746 chr14 61390139 61390619 + 0 NA intron (ENSMUSG00000021929.9, intron 6 of 16) protein_coding-intron (ENSMUSG00000021929.9, intron 6 of 16) -17288 ENSMUSG00000021929.9 ENSMUSG00000021929 ENSMUST00000225207 Kpna3 protein_coding Interval_158053 chr8 78390010 78391574 + 0 NA promoter-TSS (ENSMUSG00000037101.16) protein_coding-promoter-TSS (ENSMUSG00000037101.16) 45853 ENSMUSG00000031688.4 ENSMUSG00000031688 ENSMUST00000034115 Pou4f2 protein_coding Interval_95885 chr2 118007993 118008381 + 0 NA intron (ENSMUSG00000087203.7, intron 8 of 9) processed_transcript-intron (ENSMUSG00000087203.7, intron 8 of 9) -31656 ENSMUSG00000103266.1 ENSMUSG00000103266 ENSMUST00000193616 Gm36979 TEC Interval_160495 chr8 109998683 109999281 + 0 NA exon (ENSMUSG00000001670.13, exon 12 of 12) protein_coding-exon (ENSMUSG00000001670.13, exon 12 of 12) 8476 ENSMUSG00000001670.13 ENSMUSG00000001670 ENSMUST00000143741 Tat protein_coding Interval_147199 chr7 64372339 64372535 + 0 NA exon (ENSMUSG00000033458.17, exon 2 of 14) protein_coding-exon (ENSMUSG00000033458.17, exon 2 of 14) 936 ENSMUSG00000033458.17 ENSMUSG00000033458 ENSMUST00000206730 Fan1 protein_coding Interval_24009 chr11 29435188 29435750 + 0 NA intron (ENSMUSG00000032740.17, intron 7 of 30) protein_coding-intron (ENSMUSG00000032740.17, intron 7 of 31) 61121 ENSMUSG00000032740.17 ENSMUSG00000032740 ENSMUST00000144450 Ccdc88a protein_coding Interval_139881 chr6 112320261 112321140 + 0 NA intron (ENSMUSG00000057604.9, intron 4 of 5) protein_coding-intron (ENSMUSG00000057604.9, intron 4 of 5) 27469 ENSMUSG00000107559.1 ENSMUSG00000107559 ENSMUST00000204822 Gm44193 TEC Interval_104780 chr3 73028019 73028376 + 0 NA Intergenic Intergenic 15642 ENSMUSG00000102753.1 ENSMUSG00000102753 ENSMUST00000192141 Gm37056 TEC Interval_41382 chr12 113187625 113189252 + 0 NA exon (ENSMUSG00000049036.7, exon 2 of 2) protein_coding-exon (ENSMUSG00000049036.7, exon 2 of 2) 2508 ENSMUSG00000049036.7 ENSMUSG00000049036 ENSMUST00000058491 Tmem121 protein_coding Interval_76523 chr17 80754354 80755214 + 0 NA Intergenic Intergenic 26653 ENSMUSG00000054957.5 ENSMUSG00000054957 ENSMUST00000068277 Gm9959 pseudogene Interval_132266 chr5 143745388 143746333 + 0 NA Intergenic Intergenic -17843 ENSMUSG00000051306.7 ENSMUSG00000051306 ENSMUST00000129606 Usp42 protein_coding Interval_127690 chr5 106680938 106681199 + 0 NA intron (ENSMUSG00000049606.16, intron 2 of 4) protein_coding-intron (ENSMUSG00000049606.16, intron 1 of 6) 11069 ENSMUSG00000088602.2 ENSMUSG00000088602 ENSMUST00000157977 Gm24191 snRNA Interval_124588 chr5 52064939 52065515 + 0 NA Intergenic Intergenic 17105 ENSMUSG00000106292.1 ENSMUSG00000106292 ENSMUST00000195914 Gm43174 TEC Interval_82666 chr18 75791467 75791769 + 0 NA Intergenic Intergenic 10586 ENSMUSG00000097302.1 ENSMUSG00000097302 ENSMUST00000180957 1700034B16Rik lincRNA Interval_105182 chr3 83351586 83351915 + 0 NA exon (ENSMUSG00000102692.1, exon 19 of 20) protein_coding-exon (ENSMUSG00000102692.1, exon 19 of 20) -51652 ENSMUSG00000103459.1 ENSMUSG00000103459 ENSMUST00000193692 Gm38096 lincRNA Interval_144739 chr7 27928905 27929643 + 0 NA exon (ENSMUSG00000097455.1, exon 2 of 2) antisense-exon (ENSMUSG00000097455.1, exon 2 of 2) -1252 ENSMUSG00000070709.12 ENSMUSG00000070709 ENSMUST00000152330 Zfp974 protein_coding Interval_88114 chr19 59271526 59271719 + 0 NA intron (ENSMUSG00000025094.8, intron 2 of 10) protein_coding-intron (ENSMUSG00000025094.8, intron 3 of 15) -10203 ENSMUSG00000101630.1 ENSMUSG00000101630 ENSMUST00000188535 Gm29261 antisense Interval_62910 chr15 97830692 97832033 + 0 NA exon (ENSMUSG00000022475.19, exon 1 of 25) protein_coding-exon (ENSMUSG00000022475.19, exon 1 of 25) 132 ENSMUSG00000022475.19 ENSMUSG00000022475 ENSMUST00000134258 Hdac7 protein_coding Interval_108138 chr3 121809680 121811279 + 0 NA intron (ENSMUSG00000028127.10, intron 1 of 1) protein_coding-intron (ENSMUSG00000028127.10, intron 1 of 22) 4718 ENSMUSG00000028127.10 ENSMUSG00000028127 ENSMUST00000199593 Abcd3 protein_coding Interval_99968 chr2 166168611 166170701 + 0 NA Intergenic Intergenic -13993 ENSMUSG00000006800.14 ENSMUSG00000006800 ENSMUST00000133395 Sulf2 protein_coding Interval_25026 chr11 43358595 43358852 + 0 NA Intergenic Intergenic 15738 ENSMUSG00000065601.1 ENSMUSG00000065601 ENSMUST00000083667 Mir146 miRNA Interval_23211 chr11 20583497 20585190 + 0 NA intron (ENSMUSG00000049800.13, intron 1 of 1) protein_coding-intron (ENSMUSG00000049800.13, intron 1 of 1) -9154 ENSMUSG00000083555.1 ENSMUSG00000083555 ENSMUST00000121890 Gm12035 processed_pseudogene Interval_148637 chr7 83660282 83661622 + 0 NA TTS (ENSMUSG00000085080.1) antisense-TTS (ENSMUSG00000085080.1) 1377 ENSMUSG00000085080.1 ENSMUSG00000085080 ENSMUST00000125131 2310044K18Rik antisense Interval_109127 chr3 136012672 136013257 + 0 NA intron (ENSMUSG00000104710.1, intron 1 of 3) antisense-intron (ENSMUSG00000104710.1, intron 1 of 3) 38724 ENSMUSG00000105244.1 ENSMUSG00000105244 ENSMUST00000197542 Gm5281 processed_pseudogene Interval_114637 chr4 83352771 83354125 + 0 NA Intergenic Intergenic -29616 ENSMUSG00000087592.1 ENSMUSG00000087592 ENSMUST00000126437 Gm11184 lincRNA Interval_57333 chr15 8841902 8842742 + 0 NA Intergenic Intergenic -72162 ENSMUSG00000107028.1 ENSMUSG00000107028 ENSMUST00000202103 Gm5043 processed_pseudogene Interval_87249 chr19 47178091 47179802 + 0 NA promoter-TSS (ENSMUSG00000006435.16) protein_coding-promoter-TSS (ENSMUSG00000006435.16) -76 ENSMUSG00000006435.16 ENSMUSG00000006435 ENSMUST00000111807 Neurl1a protein_coding Interval_125303 chr5 66069592 66070539 + 0 NA exon (ENSMUSG00000107304.1, exon 1 of 1) TEC-exon (ENSMUSG00000107304.1, exon 1 of 1) 2830 ENSMUSG00000107304.1 ENSMUSG00000107304 ENSMUST00000201019 Gm43775 TEC Interval_138490 chr6 88627072 88627914 + 0 NA promoter-TSS (ENSMUSG00000033182.12) protein_coding-promoter-TSS (ENSMUSG00000033182.12) -8971 ENSMUSG00000033182.12 ENSMUSG00000033182 ENSMUST00000184664 Kbtbd12 protein_coding Interval_146485 chr7 46287117 46287518 + 0 NA exon (ENSMUSG00000009487.10, exon 36 of 56) protein_coding-exon (ENSMUSG00000009487.10, exon 36 of 56) 46314 ENSMUSG00000009487.10 ENSMUSG00000009487 ENSMUST00000209802 Otog protein_coding Interval_143272 chr7 4894616 4896294 + 0 NA exon (ENSMUSG00000086784.2, exon 6 of 6) protein_coding-exon (ENSMUSG00000086784.2, exon 6 of 6) 11061 ENSMUSG00000110221.1 ENSMUSG00000110221 ENSMUST00000210663 Gm36210 protein_coding Interval_84621 chr19 14490296 14490564 + 0 NA intron (ENSMUSG00000024642.17, intron 8 of 19) protein_coding-intron (ENSMUSG00000024642.17, intron 8 of 19) 105109 ENSMUSG00000024642.17 ENSMUSG00000024642 ENSMUST00000235975 Tle4 protein_coding Interval_142223 chr6 139247272 139247560 + 0 NA Intergenic Intergenic -51185 ENSMUSG00000088903.1 ENSMUSG00000088903 ENSMUST00000158278 Gm25434 scaRNA Interval_153678 chr8 4492833 4494223 + 0 NA promoter-TSS (ENSMUSG00000008206.16) protein_coding-promoter-TSS (ENSMUSG00000008206.16) 502 ENSMUSG00000008206.16 ENSMUSG00000008206 ENSMUST00000176130 Cers4 protein_coding Interval_32713 chr11 109913443 109913859 + 0 NA Intergenic Intergenic -22665 ENSMUSG00000085629.1 ENSMUSG00000085629 ENSMUST00000149226 Gm11697 antisense Interval_9803 chr1 162534314 162534541 + 0 NA exon (ENSMUSG00000026694.19, exon 8 of 8) protein_coding-exon (ENSMUSG00000026694.19, exon 8 of 8) 14102 ENSMUSG00000026694.19 ENSMUSG00000026694 ENSMUST00000195027 Eef1aknmt protein_coding Interval_80921 chr18 50180277 50180820 + 0 NA intron (ENSMUSG00000024507.6, intron 20 of 23) protein_coding-intron (ENSMUSG00000024507.6, intron 20 of 23) 28596 ENSMUSG00000117714.1 ENSMUSG00000117714 ENSMUST00000238008 Gm50439 processed_pseudogene Interval_108933 chr3 133485254 133486267 + 0 NA exon (ENSMUSG00000040943.12, exon 3 of 11) protein_coding-exon (ENSMUSG00000040943.12, exon 3 of 11) -5078 ENSMUSG00000040943.12 ENSMUSG00000040943 ENSMUST00000195913 Tet2 protein_coding Interval_163624 chr9 22679709 22680146 + 0 NA exon (ENSMUSG00000035919.16, exon 3 of 3) protein_coding-exon (ENSMUSG00000035919.16, exon 3 of 3) -1609 ENSMUSG00000089909.1 ENSMUSG00000089909 ENSMUST00000160078 Gm16164 processed_pseudogene Interval_86726 chr19 43384245 43387115 + 0 NA intron (ENSMUSG00000074852.4, intron 1 of 11) protein_coding-intron (ENSMUSG00000074852.4, intron 1 of 11) 54780 ENSMUSG00000114742.1 ENSMUSG00000114742 ENSMUST00000225283 Gm47936 antisense Interval_157518 chr8 71147457 71149118 + 0 NA Intergenic Intergenic 28945 ENSMUSG00000098594.1 ENSMUSG00000098594 ENSMUST00000184911 Gm27628 miRNA Interval_119194 chr4 136126981 136127873 + 0 NA Intergenic Intergenic -10069 ENSMUSG00000088614.1 ENSMUSG00000088614 ENSMUST00000157989 Gm26001 snRNA Interval_18026 chr10 81424170 81424615 + 0 NA intron (ENSMUSG00000055053.18, intron 1 of 9) protein_coding-intron (ENSMUSG00000055053.18, intron 1 of 9) -8095 ENSMUSG00000105379.1 ENSMUSG00000105379 ENSMUST00000199973 Mir1191b miRNA Interval_59085 chr15 43387729 43387932 + 0 NA Intergenic Intergenic -10157 ENSMUSG00000115635.1 ENSMUSG00000115635 ENSMUST00000227040 Gm49271 lincRNA Interval_148617 chr7 83376964 83377297 + 0 NA Intergenic Intergenic 6011 ENSMUSG00000109013.1 ENSMUSG00000109013 ENSMUST00000207369 Gm44723 TEC Interval_75672 chr17 70515433 70517164 + 0 NA promoter-TSS (ENSMUSG00000003279.17) protein_coding-promoter-TSS (ENSMUSG00000003279.17) 239284 ENSMUSG00000097282.1 ENSMUSG00000097282 ENSMUST00000181546 5031415H12Rik antisense Interval_45837 chr13 58462563 58464395 + 0 NA Intergenic Intergenic 20458 ENSMUSG00000114654.1 ENSMUSG00000114654 ENSMUST00000225848 Gm47918 lincRNA Interval_116431 chr4 111885532 111887074 + 0 NA intron (ENSMUSG00000028544.14, intron 11 of 14) protein_coding-intron (ENSMUSG00000028544.14, intron 11 of 14) -5676 ENSMUSG00000028544.14 ENSMUSG00000028544 ENSMUST00000131772 Slc5a9 protein_coding Interval_108318 chr3 123636128 123636407 + 0 NA intron (ENSMUSG00000027977.15, intron 2 of 13) protein_coding-intron (ENSMUSG00000027977.15, intron 1 of 12) 51705 ENSMUSG00000104860.1 ENSMUSG00000104860 ENSMUST00000196470 Gm42510 TEC Interval_153390 chr7 144314665 144315259 + 0 NA intron (ENSMUSG00000037541.22, intron 4 of 12) protein_coding-intron (ENSMUSG00000037541.22, intron 2 of 9) 76237 ENSMUSG00000037541.22 ENSMUSG00000037541 ENSMUST00000136979 Shank2 protein_coding Interval_153991 chr8 11692121 11692305 + 0 NA TTS (ENSMUSG00000110177.1) processed_pseudogene-TTS (ENSMUSG00000110177.1) 2271 ENSMUSG00000110177.1 ENSMUSG00000110177 ENSMUST00000209673 Gm6524 processed_pseudogene Interval_53003 chr14 53347590 53348975 + 0 NA Intergenic Intergenic 2392 ENSMUSG00000076821.3 ENSMUSG00000076821 ENSMUST00000103632 Trav8n-2 TR_V_gene Interval_171481 chr9 118678410 118679126 + 0 NA intron (ENSMUSG00000039115.13, intron 11 of 27) protein_coding-intron (ENSMUSG00000039115.13, intron 11 of 27) -88573 ENSMUSG00000110676.1 ENSMUSG00000110676 ENSMUST00000212679 Gm45897 lincRNA Interval_58193 chr15 30610271 30610999 + 0 NA intron (ENSMUSG00000115337.1, intron 2 of 3) protein_coding-intron (ENSMUSG00000022240.10, intron 3 of 22) 9121 ENSMUSG00000094704.1 ENSMUSG00000094704 ENSMUST00000178017 Gm24487 snRNA Interval_10203 chr1 167126267 167126466 + 0 NA Intergenic Intergenic -14789 ENSMUSG00000102870.1 ENSMUSG00000102870 ENSMUST00000192761 Gm17868 unprocessed_pseudogene Interval_121427 chr4 155727373 155728197 + 0 NA intron (ENSMUSG00000029038.9, intron 2 of 3) protein_coding-intron (ENSMUSG00000029038.9, intron 2 of 4) 6842 ENSMUSG00000096221.3 ENSMUSG00000096221 ENSMUST00000197451 1500002C15Rik antisense Interval_61061 chr15 79006577 79006775 + 0 NA TTS (ENSMUSG00000033088.19) protein_coding-TTS (ENSMUSG00000033088.19) 4365 ENSMUSG00000116505.1 ENSMUSG00000116505 ENSMUST00000230425 Gm10865 antisense Interval_96332 chr2 121694841 121695760 + 0 NA intron (ENSMUSG00000027238.17, intron 1 of 7) protein_coding-intron (ENSMUSG00000027238.17, intron 1 of 13) 6425 ENSMUSG00000081264.1 ENSMUSG00000081264 ENSMUST00000117683 Gm14021 processed_pseudogene Interval_73358 chr17 36690795 36691116 + 0 NA Intergenic Intergenic 12254 ENSMUSG00000092298.1 ENSMUSG00000092298 ENSMUST00000172657 Gm8877 unprocessed_pseudogene Interval_136656 chr6 57229415 57229853 + 0 NA Intergenic Intergenic -2052 ENSMUSG00000114982.1 ENSMUSG00000114982 ENSMUST00000177435 Vmn1r14 protein_coding Interval_100978 chr2 173781682 173782029 + 0 NA exon (ENSMUSG00000054455.5, exon 6 of 6) protein_coding-exon (ENSMUSG00000054455.5, exon 6 of 6) 13655 ENSMUSG00000054455.5 ENSMUSG00000054455 ENSMUST00000154306 Vapb protein_coding Interval_173432 chrX 93610019 93610336 + 0 NA intron (ENSMUSG00000006678.6, intron 4 of 36) protein_coding-intron (ENSMUSG00000006678.6, intron 4 of 36) -28437 ENSMUSG00000087255.2 ENSMUSG00000087255 ENSMUST00000121255 Gm6985 processed_pseudogene Interval_28990 chr11 79751832 79753820 + 0 NA Intergenic Intergenic 26426 ENSMUSG00000065489.1 ENSMUSG00000065489 ENSMUST00000083555 Mir365-2 miRNA Interval_126674 chr5 91976467 91977807 + 0 NA Intergenic Intergenic -5568 ENSMUSG00000088102.1 ENSMUSG00000088102 ENSMUST00000157477 Gm24113 misc_RNA Interval_101989 chr3 14578263 14579445 + 0 NA exon (ENSMUSG00000027552.14, exon 1 of 8) protein_coding-exon (ENSMUSG00000027552.14, exon 1 of 8) 183 ENSMUSG00000027552.14 ENSMUSG00000027552 ENSMUST00000165922 E2f5 protein_coding Interval_134835 chr6 31995645 31996182 + 0 NA Intergenic Intergenic -54333 ENSMUSG00000029766.7 ENSMUSG00000029766 ENSMUST00000156267 1700012A03Rik protein_coding Interval_74415 chr17 50045105 50045527 + 0 NA intron (ENSMUSG00000039316.14, intron 6 of 6) protein_coding-intron (ENSMUSG00000039316.14, intron 6 of 9) -68703 ENSMUSG00000117117.1 ENSMUSG00000117117 ENSMUST00000233275 Gm49901 lincRNA Interval_145190 chr7 30542245 30542592 + 0 NA TTS (ENSMUSG00000036864.16) protein_coding-TTS (ENSMUSG00000036864.16) 2752 ENSMUSG00000109102.1 ENSMUSG00000109102 ENSMUST00000208842 1700019A23Rik TEC Interval_12910 chr10 7955222 7956970 + 0 NA promoter-TSS (ENSMUSG00000015755.16) protein_coding-promoter-TSS (ENSMUSG00000015755.16) -203 ENSMUSG00000015755.16 ENSMUSG00000015755 ENSMUST00000130322 Tab2 protein_coding Interval_166546 chr9 60793910 60795223 + 0 NA promoter-TSS (ENSMUSG00000034485.10) protein_coding-promoter-TSS (ENSMUSG00000034485.10) -59 ENSMUSG00000034485.10 ENSMUSG00000034485 ENSMUST00000216574 Uaca protein_coding Interval_72924 chr17 33536142 33537990 + 0 NA promoter-TSS (ENSMUSG00000024299.17) protein_coding-promoter-TSS (ENSMUSG00000024299.17) 12856 ENSMUSG00000024299.17 ENSMUSG00000024299 ENSMUST00000174666 Adamts10 protein_coding Interval_134771 chr6 31356500 31357423 + 0 NA intron (ENSMUSG00000086931.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000086931.1, intron 1 of 1) 218 ENSMUSG00000086931.1 ENSMUSG00000086931 ENSMUST00000156115 Gm14532 lincRNA Interval_11996 chr1 188655789 188655997 + 0 NA intron (ENSMUSG00000026609.15, intron 12 of 12) protein_coding-intron (ENSMUSG00000026609.15, intron 36 of 70) -32840 ENSMUSG00000077235.1 ENSMUSG00000077235 ENSMUST00000104047 Gm25095 snoRNA Interval_101170 chr2 178758138 178758751 + 0 NA Intergenic Intergenic 262689 ENSMUSG00000082215.3 ENSMUSG00000082215 ENSMUST00000118225 Gm14314 processed_pseudogene Interval_76069 chr17 74688209 74689322 + 0 NA intron (ENSMUSG00000024073.16, intron 10 of 17) protein_coding-intron (ENSMUSG00000024073.16, intron 65 of 72) 53043 ENSMUSG00000024073.16 ENSMUSG00000024073 ENSMUST00000182157 Birc6 protein_coding Interval_84762 chr19 16358713 16358953 + 0 NA intron (ENSMUSG00000024639.5, intron 5 of 6) protein_coding-intron (ENSMUSG00000024639.5, intron 5 of 6) -43829 ENSMUSG00000098718.1 ENSMUSG00000098718 ENSMUST00000184935 Mir496b miRNA Interval_93464 chr2 73271353 73272065 + 0 NA promoter-TSS (ENSMUSG00000068859.5) protein_coding-promoter-TSS (ENSMUSG00000068859.5) -257 ENSMUSG00000068859.5 ENSMUSG00000068859 ENSMUST00000147133 Sp9 protein_coding Interval_162655 chr9 7534340 7535064 + 0 NA Intergenic Intergenic -23754 ENSMUSG00000005800.3 ENSMUSG00000005800 ENSMUST00000018765 Mmp8 protein_coding Interval_70542 chr17 11829657 11830012 + 0 NA intron (ENSMUSG00000023826.16, intron 6 of 10) protein_coding-intron (ENSMUSG00000023826.16, intron 7 of 11) -97489 ENSMUSG00000104466.1 ENSMUSG00000104466 ENSMUST00000194203 Gm10513 TEC Interval_93021 chr2 69631356 69631719 + 0 NA Intergenic Intergenic -15693 ENSMUSG00000063145.10 ENSMUSG00000063145 ENSMUST00000127806 Bbs5 protein_coding Interval_103516 chr3 46198025 46199196 + 0 NA Intergenic Intergenic -91223 ENSMUSG00000077256.1 ENSMUSG00000077256 ENSMUST00000104068 Gm26081 snoRNA Interval_146840 chr7 53024248 53024731 + 0 NA Intergenic Intergenic 97419 ENSMUSG00000070203.1 ENSMUSG00000070203 ENSMUST00000093693 Gm22444 snRNA Interval_162124 chr8 125341665 125342058 + 0 NA Intergenic Intergenic -114538 ENSMUSG00000086694.1 ENSMUSG00000086694 ENSMUST00000156666 Gm16237 antisense Interval_29336 chr11 83270865 83272672 + 0 NA TTS (ENSMUSG00000064856.1) snRNA-TTS (ENSMUSG00000064856.1) 270 ENSMUSG00000064856.1 ENSMUSG00000064856 ENSMUST00000082922 Gm23444 snRNA Interval_154454 chr8 18028112 18028627 + 0 NA Intergenic Intergenic 246452 ENSMUSG00000088320.1 ENSMUSG00000088320 ENSMUST00000157695 Gm25665 snoRNA Interval_147906 chr7 75399078 75399743 + 0 NA Intergenic Intergenic 21725 ENSMUSG00000108590.1 ENSMUSG00000108590 ENSMUST00000206460 Gm44962 processed_pseudogene Interval_21134 chr10 126806909 126807499 + 0 NA Intergenic Intergenic 3096 ENSMUSG00000112492.1 ENSMUSG00000112492 ENSMUST00000219394 Gm9111 processed_pseudogene Interval_171594 chr9 119429965 119430571 + 0 NA promoter-TSS (ENSMUSG00000061393.14) protein_coding-promoter-TSS (ENSMUSG00000061393.14) -78 ENSMUSG00000061393.14 ENSMUSG00000061393 ENSMUST00000213431 Acvr2b protein_coding Interval_15547 chr10 51237823 51239217 + 0 NA promoter-TSS (ENSMUSG00000111880.1) processed_pseudogene-promoter-TSS (ENSMUSG00000111880.1) -309 ENSMUSG00000111880.1 ENSMUSG00000111880 ENSMUST00000218609 Gm5040 processed_pseudogene Interval_71288 chr17 21924277 21925503 + 0 NA Intergenic Intergenic -3718 ENSMUSG00000117049.1 ENSMUSG00000117049 ENSMUST00000233196 Gm6540 processed_pseudogene Interval_169492 chr9 98423419 98425947 + 0 NA exon (ENSMUSG00000046402.10, exon 1 of 4) protein_coding-exon (ENSMUSG00000046402.10, exon 1 of 4) 1722 ENSMUSG00000046402.10 ENSMUSG00000046402 ENSMUST00000052068 Rbp1 protein_coding Interval_168604 chr9 84096427 84097659 + 0 NA intron (ENSMUSG00000032263.14, intron 9 of 10) protein_coding-intron (ENSMUSG00000032263.14, intron 9 of 10) -72226 ENSMUSG00000111757.1 ENSMUSG00000111757 ENSMUST00000215223 Gm46124 antisense Interval_136607 chr6 56581723 56582748 + 0 NA intron (ENSMUSG00000004347.17, intron 1 of 19) protein_coding-intron (ENSMUSG00000004347.17, intron 1 of 19) 1611 ENSMUSG00000096087.1 ENSMUSG00000096087 ENSMUST00000104123 Gm24709 snoRNA Interval_11641 chr1 183699426 183699819 + 0 NA Intergenic Intergenic -17491 ENSMUSG00000090533.2 ENSMUSG00000090533 ENSMUST00000172123 Gm8214 processed_pseudogene Interval_24063 chr11 29882916 29883744 + 0 NA intron (ENSMUSG00000044072.14, intron 5 of 41) protein_coding-intron (ENSMUSG00000044072.14, intron 5 of 41) 33869 ENSMUSG00000088135.1 ENSMUSG00000088135 ENSMUST00000157510 Gm22588 snoRNA Interval_113886 chr4 59580409 59582039 + 0 NA promoter-TSS (ENSMUSG00000028383.17) protein_coding-promoter-TSS (ENSMUSG00000028383.17) -13086 ENSMUSG00000028383.17 ENSMUSG00000028383 ENSMUST00000128792 Hsdl2 protein_coding Interval_50541 chr14 14832603 14832901 + 0 NA intron (ENSMUSG00000042567.20, intron 5 of 35) protein_coding-intron (ENSMUSG00000042567.20, intron 4 of 34) 29337 ENSMUSG00000042567.20 ENSMUSG00000042567 ENSMUST00000136826 Nek10 protein_coding Interval_172107 chrX 7648421 7650201 + 0 NA intron (ENSMUSG00000031144.15, intron 6 of 6) protein_coding-intron (ENSMUSG00000031144.15, intron 6 of 6) 7947 ENSMUSG00000087644.1 ENSMUSG00000087644 ENSMUST00000145894 Gm14703 antisense Interval_67825 chr16 57486130 57486447 + 0 NA intron (ENSMUSG00000022748.8, intron 1 of 1) protein_coding-intron (ENSMUSG00000022748.8, intron 1 of 1) 120576 ENSMUSG00000022748.8 ENSMUSG00000022748 ENSMUST00000232413 Cmss1 protein_coding Interval_7275 chr1 128372516 128372753 + 0 NA intron (ENSMUSG00000026356.15, intron 10 of 15) protein_coding-intron (ENSMUSG00000026356.15, intron 10 of 15) 6853 ENSMUSG00000026356.15 ENSMUSG00000026356 ENSMUST00000064309 Dars protein_coding Interval_160903 chr8 114816540 114817737 + 0 NA intron (ENSMUSG00000004637.15, intron 8 of 8) protein_coding-intron (ENSMUSG00000004637.15, intron 8 of 8) 104971 ENSMUSG00000004637.15 ENSMUSG00000004637 ENSMUST00000162052 Wwox protein_coding Interval_16854 chr10 69272632 69273085 + 0 NA exon (ENSMUSG00000019944.14, exon 7 of 7) protein_coding-exon (ENSMUSG00000019944.14, exon 7 of 7) -39281 ENSMUSG00000112798.1 ENSMUSG00000112798 ENSMUST00000217861 Gm40685 lincRNA Interval_95939 chr2 118564411 118565155 + 0 NA Intergenic Intergenic -19467 ENSMUSG00000040093.16 ENSMUSG00000040093 ENSMUST00000138342 Bmf protein_coding Interval_146492 chr7 46370831 46371282 + 0 NA Intergenic Intergenic -5418 ENSMUSG00000009471.4 ENSMUSG00000009471 ENSMUST00000072514 Myod1 protein_coding Interval_16380 chr10 62601711 62602948 + 0 NA promoter-TSS (ENSMUSG00000020075.8) protein_coding-promoter-TSS (ENSMUSG00000020075.8) -21 ENSMUSG00000112347.1 ENSMUSG00000112347 ENSMUST00000218594 Gm47257 bidirectional_promoter_lncRNA Interval_43233 chr13 26162549 26162827 + 0 NA Intergenic Intergenic -32013 ENSMUSG00000084358.1 ENSMUSG00000084358 ENSMUST00000119264 Gm11352 processed_pseudogene Interval_10724 chr1 173511034 173512426 + 0 NA Intergenic Intergenic -12356 ENSMUSG00000104989.1 ENSMUSG00000104989 ENSMUST00000197288 Gm44481 miRNA Interval_137499 chr6 72767789 72769015 + 0 NA intron (ENSMUSG00000055799.13, intron 2 of 5) protein_coding-intron (ENSMUSG00000055799.13, intron 3 of 11) -16488 ENSMUSG00000104501.1 ENSMUSG00000104501 ENSMUST00000193564 Gm37736 TEC Interval_72439 chr17 29812856 29814665 + 0 NA exon (ENSMUSG00000117489.1, exon 2 of 2) lincRNA-exon (ENSMUSG00000117489.1, exon 2 of 2) 5627 ENSMUSG00000117489.1 ENSMUSG00000117489 ENSMUST00000234919 Gm50016 lincRNA Interval_83865 chr19 5177241 5177549 + 0 NA intron (ENSMUSG00000024855.10, intron 2 of 4) protein_coding-intron (ENSMUSG00000024855.10, intron 1 of 23) 23908 ENSMUSG00000098803.1 ENSMUSG00000098803 ENSMUST00000183577 Gm27468 miRNA Interval_87876 chr19 56775698 56777798 + 0 NA Intergenic Intergenic -21402 ENSMUSG00000067063.1 ENSMUSG00000067063 ENSMUST00000086830 Gm6990 processed_pseudogene Interval_135765 chr6 47170875 47171104 + 0 NA intron (ENSMUSG00000039419.17, intron 20 of 23) protein_coding-intron (ENSMUSG00000039419.17, intron 20 of 23) 125833 ENSMUSG00000107952.1 ENSMUSG00000107952 ENSMUST00000203583 Gm6352 processed_pseudogene Interval_79689 chr18 34547396 34547766 + 0 NA exon (ENSMUSG00000012282.2, exon 6 of 6) protein_coding-exon (ENSMUSG00000012282.2, exon 6 of 6) 5268 ENSMUSG00000012282.2 ENSMUSG00000012282 ENSMUST00000012426 Wnt8a protein_coding Interval_116142 chr4 108078265 108080218 + 0 NA intron (ENSMUSG00000028603.15, intron 10 of 15) protein_coding-intron (ENSMUSG00000028603.15, intron 10 of 15) -8116 ENSMUSG00000098980.1 ENSMUSG00000098980 ENSMUST00000183919 Mir6397 miRNA Interval_57527 chr15 12106203 12109252 + 0 NA Intergenic Intergenic -10124 ENSMUSG00000022201.16 ENSMUSG00000022201 ENSMUST00000140787 Zfr protein_coding Interval_100062 chr2 166869902 166870757 + 0 NA exon (ENSMUSG00000074582.10, exon 27 of 39) protein_coding-exon (ENSMUSG00000074582.10, exon 27 of 39) -35711 ENSMUSG00000002718.14 ENSMUSG00000002718 ENSMUST00000129061 Cse1l protein_coding Interval_86674 chr19 42473018 42473259 + 0 NA Intergenic Intergenic -41353 ENSMUSG00000042401.8 ENSMUSG00000042401 ENSMUST00000238182 Crtac1 protein_coding Interval_122274 chr5 20881391 20882746 + 0 NA promoter-TSS (ENSMUSG00000045435.9) protein_coding-promoter-TSS (ENSMUSG00000045435.9) -23 ENSMUSG00000039987.15 ENSMUSG00000039987 ENSMUST00000156044 Phtf2 protein_coding Interval_31938 chr11 103960996 103961993 + 0 NA Intergenic Intergenic -18095 ENSMUSG00000062421.13 ENSMUSG00000062421 ENSMUST00000154089 Arf2 protein_coding Interval_24102 chr11 30266897 30268901 + 0 NA promoter-TSS (ENSMUSG00000020315.18) protein_coding-promoter-TSS (ENSMUSG00000020315.18) 276 ENSMUSG00000020315.18 ENSMUSG00000020315 ENSMUST00000149117 Sptbn1 protein_coding Interval_86353 chr19 38947875 38948113 + 0 NA intron (ENSMUSG00000025001.11, intron 3 of 3) protein_coding-intron (ENSMUSG00000025001.11, intron 10 of 21) 16604 ENSMUSG00000025001.11 ENSMUSG00000025001 ENSMUST00000127968 Hells protein_coding Interval_12064 chr1 189327329 189327843 + 0 NA intron (ENSMUSG00000037624.15, intron 2 of 6) protein_coding-intron (ENSMUSG00000037624.15, intron 2 of 6) -16398 ENSMUSG00000104507.1 ENSMUSG00000104507 ENSMUST00000192797 A430027H14Rik antisense Interval_139869 chr6 112170790 112171541 + 0 NA Intergenic Intergenic -39543 ENSMUSG00000100219.1 ENSMUSG00000100219 ENSMUST00000186102 1700054K19Rik lincRNA Interval_117317 chr4 122960166 122961644 + 0 NA promoter-TSS (ENSMUSG00000086443.1) processed_transcript-promoter-TSS (ENSMUSG00000086443.1) 247 ENSMUSG00000028655.11 ENSMUSG00000028655 ENSMUST00000127047 Mfsd2a protein_coding Interval_150399 chr7 110144799 110145036 + 0 NA intron (ENSMUSG00000101585.6, intron 2 of 3) antisense-intron (ENSMUSG00000101585.6, intron 2 of 3) 22871 ENSMUSG00000031016.9 ENSMUSG00000031016 ENSMUST00000033326 Wee1 protein_coding Interval_123452 chr5 32643153 32643425 + 0 NA intron (ENSMUSG00000014932.15, intron 2 of 11) protein_coding-intron (ENSMUSG00000014932.15, intron 2 of 11) 7776 ENSMUSG00000085234.1 ENSMUSG00000085234 ENSMUST00000155976 Gm15614 antisense Interval_93713 chr2 76056657 76057799 + 0 NA intron (ENSMUSG00000075270.11, intron 10 of 14) protein_coding-intron (ENSMUSG00000075270.11, intron 13 of 19) -75261 ENSMUSG00000075271.4 ENSMUSG00000075271 ENSMUST00000099994 Ttc30a1 protein_coding Interval_6848 chr1 120083020 120084389 + 0 NA Intergenic Intergenic -9630 ENSMUSG00000050777.7 ENSMUSG00000050777 ENSMUST00000056089 Tmem37 protein_coding Interval_146429 chr7 45832415 45834293 + 0 NA promoter-TSS (ENSMUSG00000110020.1) antisense-promoter-TSS (ENSMUSG00000110020.1) -512 ENSMUSG00000110020.1 ENSMUSG00000110020 ENSMUST00000210177 Gm45441 antisense Interval_9194 chr1 154994763 154996173 + 0 NA Intergenic Intergenic -36271 ENSMUSG00000101433.1 ENSMUSG00000101433 ENSMUST00000191584 Gm29441 processed_pseudogene Interval_116088 chr4 107550185 107551082 + 0 NA intron (ENSMUSG00000034762.9, intron 1 of 9) protein_coding-intron (ENSMUSG00000034762.9, intron 2 of 10) -30570 ENSMUSG00000034762.9 ENSMUSG00000034762 ENSMUST00000125573 Glis1 protein_coding Interval_3269 chr1 55296165 55296949 + 0 NA intron (ENSMUSG00000025977.15, intron 9 of 9) protein_coding-intron (ENSMUSG00000025977.15, intron 1 of 2) -38844 ENSMUSG00000100215.1 ENSMUSG00000100215 ENSMUST00000162574 Gm8292 processed_pseudogene Interval_125374 chr5 66532603 66532862 + 0 NA exon (ENSMUSG00000106720.1, exon 1 of 1) TEC-exon (ENSMUSG00000106720.1, exon 1 of 1) 1429 ENSMUSG00000106720.1 ENSMUSG00000106720 ENSMUST00000202051 Gm43795 TEC Interval_86377 chr19 39483687 39484621 + 0 NA Intergenic Intergenic -21079 ENSMUSG00000032808.2 ENSMUSG00000032808 ENSMUST00000035488 Cyp2c38 protein_coding Interval_77465 chr17 89201725 89202494 + 0 NA Intergenic Intergenic -1434 ENSMUSG00000032937.5 ENSMUSG00000032937 ENSMUST00000035701 Fshr protein_coding Interval_104304 chr3 63155631 63155896 + 0 NA Intergenic Intergenic 3546 ENSMUSG00000089175.1 ENSMUSG00000089175 ENSMUST00000158550 Gm22433 scaRNA Interval_53819 chr14 62261583 62262220 + 0 NA Intergenic Intergenic 31146 ENSMUSG00000048281.9 ENSMUSG00000048281 ENSMUST00000225120 Dleu7 protein_coding Interval_32341 chr11 107066665 107067843 + 0 NA promoter-TSS (ENSMUSG00000040481.17) protein_coding-promoter-TSS (ENSMUSG00000040481.17) -19911 ENSMUSG00000040481.17 ENSMUSG00000040481 ENSMUST00000149486 Bptf protein_coding Interval_4787 chr1 78648870 78649865 + 0 NA Intergenic Intergenic -9073 ENSMUSG00000079470.8 ENSMUSG00000079470 ENSMUST00000151622 Utp14b protein_coding Interval_91538 chr2 41714784 41715341 + 0 NA intron (ENSMUSG00000049252.17, intron 3 of 62) protein_coding-intron (ENSMUSG00000049252.17, intron 6 of 90) 273767 ENSMUSG00000081999.3 ENSMUSG00000081999 ENSMUST00000120980 Gm13461 processed_pseudogene Interval_15545 chr10 51232218 51232481 + 0 NA Intergenic Intergenic -6480 ENSMUSG00000111880.1 ENSMUSG00000111880 ENSMUST00000218609 Gm5040 processed_pseudogene Interval_142625 chr6 144360863 144362010 + 0 NA intron (ENSMUSG00000041540.16, intron 4 of 6) protein_coding-intron (ENSMUSG00000041540.16, intron 4 of 13) -119789 ENSMUSG00000087157.1 ENSMUSG00000087157 ENSMUST00000156443 Sox5os2 antisense Interval_150396 chr7 110137545 110138904 + 0 NA intron (ENSMUSG00000031016.9, intron 8 of 10) protein_coding-intron (ENSMUSG00000031016.9, intron 8 of 10) 16178 ENSMUSG00000031016.9 ENSMUSG00000031016 ENSMUST00000033326 Wee1 protein_coding Interval_111874 chr4 32170162 32171148 + 0 NA Intergenic Intergenic 20869 ENSMUSG00000083872.1 ENSMUSG00000083872 ENSMUST00000119323 Gm11928 processed_pseudogene Interval_101212 chr2 179528636 179529773 + 0 NA intron (ENSMUSG00000000305.12, intron 2 of 2) protein_coding-intron (ENSMUSG00000000305.12, intron 2 of 15) 84363 ENSMUSG00000083410.1 ENSMUSG00000083410 ENSMUST00000120800 Gm14300 processed_pseudogene Interval_151471 chr7 122919896 122920665 + 0 NA Intergenic Intergenic 49770 ENSMUSG00000108452.1 ENSMUSG00000108452 ENSMUST00000205998 4930413G21Rik TEC Interval_139381 chr6 99666205 99667258 + 0 NA promoter-TSS (ENSMUSG00000093661.1) protein_coding-promoter-TSS (ENSMUSG00000093661.1) 40 ENSMUSG00000093661.1 ENSMUSG00000093661 ENSMUST00000032151 Eif4e3 protein_coding Interval_136729 chr6 58669501 58670734 + 0 NA intron (ENSMUSG00000029802.13, intron 7 of 15) protein_coding-intron (ENSMUSG00000029802.13, intron 7 of 15) 29535 ENSMUSG00000029802.13 ENSMUSG00000029802 ENSMUST00000134426 Abcg2 protein_coding Interval_89239 chr2 18320862 18321421 + 0 NA intron (ENSMUSG00000026740.12, intron 1 of 11) protein_coding-intron (ENSMUSG00000026740.12, intron 1 of 10) 17848 ENSMUSG00000082520.2 ENSMUSG00000082520 ENSMUST00000118436 Gm13349 processed_pseudogene Interval_55220 chr14 79419998 79420722 + 0 NA TTS (ENSMUSG00000022022.3) protein_coding-TTS (ENSMUSG00000022022.3) -6151 ENSMUSG00000043881.9 ENSMUSG00000043881 ENSMUST00000061222 Kbtbd7 protein_coding Interval_173923 chrX 112150963 112151349 + 0 NA intron (ENSMUSG00000109156.1, intron 7 of 15) protein_coding-intron (ENSMUSG00000109156.1, intron 7 of 15) -11398 ENSMUSG00000083392.1 ENSMUSG00000083392 ENSMUST00000118081 Gm6335 processed_pseudogene Interval_122114 chr5 17245137 17245515 + 0 NA Intergenic Intergenic -17392 ENSMUSG00000091273.1 ENSMUSG00000091273 ENSMUST00000166114 Gm6673 unprocessed_pseudogene Interval_72765 chr17 32034112 32034653 + 0 NA intron (ENSMUSG00000002076.12, intron 2 of 8) protein_coding-intron (ENSMUSG00000002076.12, intron 1 of 7) 1967 ENSMUSG00000002076.12 ENSMUSG00000002076 ENSMUST00000138172 Hsf2bp protein_coding Interval_148576 chr7 82783108 82783854 + 0 NA Intergenic Intergenic -27837 ENSMUSG00000086690.1 ENSMUSG00000086690 ENSMUST00000144828 4933406J10Rik antisense Interval_136843 chr6 61300619 61301542 + 0 NA intron (ENSMUSG00000039578.17, intron 1 of 1) protein_coding-intron (ENSMUSG00000039578.17, intron 1 of 10) -99527 ENSMUSG00000107757.1 ENSMUSG00000107757 ENSMUST00000204456 Gm43898 processed_pseudogene Interval_1447 chr1 23598275 23598995 + 0 NA Intergenic Intergenic 24048 ENSMUSG00000099503.1 ENSMUSG00000099503 ENSMUST00000191140 Gm28822 lincRNA Interval_139552 chr6 100934880 100935108 + 0 NA Intergenic Intergenic -11838 ENSMUSG00000108074.1 ENSMUSG00000108074 ENSMUST00000205099 4930595O18Rik TEC Interval_160035 chr8 105951051 105951264 + 0 NA TTS (ENSMUSG00000099131.1) miRNA-TTS (ENSMUSG00000099131.1) 542 ENSMUSG00000099131.1 ENSMUSG00000099131 ENSMUST00000183884 Mir7074 miRNA Interval_7161 chr1 127321116 127322846 + 0 NA intron (ENSMUSG00000036155.13, intron 4 of 10) protein_coding-intron (ENSMUSG00000036155.13, intron 4 of 17) -9831 ENSMUSG00000106307.1 ENSMUSG00000106307 ENSMUST00000199545 Gm23370 scaRNA Interval_17977 chr10 81200318 81201203 + 0 NA intron (ENSMUSG00000004939.7, intron 2 of 6) protein_coding-intron (ENSMUSG00000004939.7, intron 2 of 6) 1291 ENSMUSG00000004939.7 ENSMUSG00000004939 ENSMUST00000005069 Nmrk2 protein_coding Interval_120315 chr4 145386677 145387092 + 0 NA Intergenic Intergenic -4059 ENSMUSG00000082758.1 ENSMUSG00000082758 ENSMUST00000121756 Gm13024 processed_pseudogene Interval_147743 chr7 73303851 73305928 + 0 NA Intergenic Intergenic -5641 ENSMUSG00000108530.1 ENSMUSG00000108530 ENSMUST00000205600 4930429H19Rik lincRNA Interval_122458 chr5 23015969 23016246 + 0 NA intron (ENSMUSG00000106379.1, intron 1 of 3) protein_coding-intron (ENSMUSG00000106379.1, intron 1 of 3) -84094 ENSMUSG00000060879.3 ENSMUSG00000060879 ENSMUST00000075377 Gm6564 processed_pseudogene Interval_92686 chr2 62638296 62638509 + 0 NA intron (ENSMUSG00000026896.14, intron 2 of 7) protein_coding-intron (ENSMUSG00000026896.14, intron 2 of 15) 7853 ENSMUSG00000026896.14 ENSMUSG00000026896 ENSMUST00000175964 Ifih1 protein_coding Interval_75868 chr17 72236546 72237332 + 0 NA intron (ENSMUSG00000055471.7, intron 3 of 4) protein_coding-intron (ENSMUSG00000055471.7, intron 3 of 28) -19319 ENSMUSG00000117046.1 ENSMUSG00000117046 ENSMUST00000233853 Gm19183 processed_pseudogene Interval_22665 chr11 12667399 12667675 + 0 NA Intergenic Intergenic -9396 ENSMUSG00000089034.1 ENSMUSG00000089034 ENSMUST00000158409 Gm22156 snoRNA Interval_2699 chr1 43542571 43542898 + 0 NA intron (ENSMUSG00000066877.11, intron 1 of 1) protein_coding-intron (ENSMUSG00000066877.11, intron 3 of 4) 10329 ENSMUSG00000066877.11 ENSMUSG00000066877 ENSMUST00000114744 Nck2 protein_coding Interval_130378 chr5 127089284 127090006 + 0 NA Intergenic Intergenic -18424 ENSMUSG00000105575.1 ENSMUSG00000105575 ENSMUST00000196673 Gm43475 lincRNA Interval_166 JH584304.1 58529 60541 + 0 NA NA NA NA NA Interval_55715 chr14 99260739 99262420 + 0 NA Intergenic Intergenic 30057 ENSMUSG00000100172.1 ENSMUSG00000100172 ENSMUST00000186660 Gm4412 processed_pseudogene Interval_56632 chr14 120970770 120971911 + 0 NA Intergenic Intergenic 55493 ENSMUSG00000030662.10 ENSMUSG00000030662 ENSMUST00000228277 Ipo5 protein_coding Interval_106901 chr3 101728663 101729214 + 0 NA Intergenic Intergenic -19186 ENSMUSG00000105642.1 ENSMUSG00000105642 ENSMUST00000199434 Gm43134 lincRNA Interval_64844 chr16 16434946 16435757 + 0 NA TTS (ENSMUSG00000022788.16) protein_coding-TTS (ENSMUSG00000022788.16) 52692 ENSMUSG00000118629.1 ENSMUSG00000118629 ENSMUST00000239385 CT573014.1 processed_pseudogene Interval_26784 chr11 60474511 60474813 + 0 NA intron (ENSMUSG00000042678.17, intron 1 of 63) protein_coding-intron (ENSMUSG00000042678.17, intron 1 of 65) -5683 ENSMUSG00000042678.17 ENSMUSG00000042678 ENSMUST00000122825 Myo15 protein_coding Interval_136768 chr6 59425890 59426876 + 0 NA promoter-TSS (ENSMUSG00000045441.5) protein_coding-promoter-TSS (ENSMUSG00000045441.5) -89 ENSMUSG00000045441.5 ENSMUSG00000045441 ENSMUST00000051065 Gprin3 protein_coding Interval_160324 chr8 108387138 108388067 + 0 NA intron (ENSMUSG00000038872.10, intron 3 of 15) protein_coding-intron (ENSMUSG00000038872.10, intron 3 of 15) 149619 ENSMUSG00000109868.1 ENSMUSG00000109868 ENSMUST00000211262 Gm39244 lincRNA Interval_93387 chr2 72633915 72634670 + 0 NA TTS (ENSMUSG00000083279.1) processed_pseudogene-TTS (ENSMUSG00000083279.1) 356 ENSMUSG00000081957.5 ENSMUSG00000081957 ENSMUST00000120282 Ak3l2-ps processed_pseudogene Interval_160117 chr8 106554162 106556685 + 0 NA exon (ENSMUSG00000061048.8, exon 16 of 16) protein_coding-exon (ENSMUSG00000061048.8, exon 16 of 16) 17927 ENSMUSG00000060019.6 ENSMUSG00000060019 ENSMUST00000073722 Gm10073 processed_pseudogene Interval_97046 chr2 130757362 130757973 + 0 NA promoter-TSS (ENSMUSG00000027309.18) protein_coding-promoter-TSS (ENSMUSG00000027309.18) -18167 ENSMUSG00000027309.18 ENSMUSG00000027309 ENSMUST00000146975 4930402H24Rik protein_coding Interval_27057 chr11 62602246 62603899 + 0 NA promoter-TSS (ENSMUSG00000064437.1) snoRNA-promoter-TSS (ENSMUSG00000064437.1) -7 ENSMUSG00000064437.1 ENSMUSG00000064437 ENSMUST00000082503 Snord49b snoRNA Interval_165721 chr9 51764699 51767081 + 0 NA intron (ENSMUSG00000053199.13, intron 1 of 14) protein_coding-intron (ENSMUSG00000053199.13, intron 1 of 14) -65882 ENSMUSG00000053199.13 ENSMUSG00000053199 ENSMUST00000149754 Arhgap20 protein_coding Interval_97797 chr2 144142829 144146259 + 0 NA intron (ENSMUSG00000074758.10, intron 1 of 2) lincRNA-intron (ENSMUSG00000074758.10, intron 2 of 3) -1171 ENSMUSG00000082480.1 ENSMUSG00000082480 ENSMUST00000118911 Gm11687 processed_pseudogene Interval_30665 chr11 95768452 95769475 + 0 NA exon (ENSMUSG00000075595.9, exon 6 of 6) protein_coding-exon (ENSMUSG00000075595.9, exon 6 of 6) 7472 ENSMUSG00000082981.1 ENSMUSG00000082981 ENSMUST00000120170 Polr2k-ps processed_pseudogene Interval_90501 chr2 30827377 30829671 + 0 NA promoter-TSS (ENSMUSG00000039483.10) protein_coding-promoter-TSS (ENSMUSG00000039483.10) -270 ENSMUSG00000039483.10 ENSMUSG00000039483 ENSMUST00000147414 Asb6 protein_coding Interval_9517 chr1 158331482 158332545 + 0 NA intron (ENSMUSG00000004031.13, intron 2 of 7) protein_coding-intron (ENSMUSG00000004031.13, intron 1 of 7) 24216 ENSMUSG00000004031.13 ENSMUSG00000004031 ENSMUST00000192709 Brinp2 protein_coding Interval_55662 chr14 98543515 98543705 + 0 NA Intergenic Intergenic -23910 ENSMUSG00000115486.1 ENSMUSG00000115486 ENSMUST00000226609 Gm49017 processed_pseudogene Interval_33023 chr11 113734009 113734599 + 0 NA intron (ENSMUSG00000041598.7, intron 1 of 1) protein_coding-intron (ENSMUSG00000041598.7, intron 1 of 1) 16850 ENSMUSG00000041598.7 ENSMUSG00000041598 ENSMUST00000153453 Cdc42ep4 protein_coding Interval_99125 chr2 157359858 157361195 + 0 NA Intergenic Intergenic -7068 ENSMUSG00000063019.5 ENSMUSG00000063019 ENSMUST00000081202 Manbal protein_coding Interval_80047 chr18 36947524 36948469 + 0 NA exon (ENSMUSG00000102312.1, exon 1 of 4) protein_coding-exon (ENSMUSG00000102312.1, exon 1 of 4) 1891 ENSMUSG00000102312.1 ENSMUSG00000102312 ENSMUST00000192503 Pcdha3 protein_coding Interval_65850 chr16 29775270 29776439 + 0 NA Intergenic Intergenic -21542 ENSMUSG00000116814.1 ENSMUSG00000116814 ENSMUST00000232037 Gm49636 lincRNA Interval_107037 chr3 103091948 103092246 + 0 NA intron (ENSMUSG00000070385.12, intron 9 of 13) protein_coding-intron (ENSMUSG00000070385.12, intron 9 of 15) -1682 ENSMUSG00000070385.12 ENSMUSG00000070385 ENSMUST00000177250 Ampd1 protein_coding Interval_16312 chr10 62132278 62134013 + 0 NA promoter-TSS (ENSMUSG00000044312.4) protein_coding-promoter-TSS (ENSMUSG00000044312.4) -30 ENSMUSG00000044312.4 ENSMUSG00000044312 ENSMUST00000218216 Neurog3 protein_coding Interval_30619 chr11 95509381 95509598 + 0 NA TTS (ENSMUSG00000046719.7) protein_coding-TTS (ENSMUSG00000046719.7) 5081 ENSMUSG00000046719.7 ENSMUSG00000046719 ENSMUST00000058866 Nxph3 protein_coding Interval_107503 chr3 108166121 108166566 + 0 NA promoter-TSS (ENSMUSG00000085318.1) lincRNA-promoter-TSS (ENSMUSG00000085318.1) -100 ENSMUSG00000085318.1 ENSMUSG00000085318 ENSMUST00000143109 Gm12524 lincRNA Interval_27136 chr11 63231320 63231600 + 0 NA Intergenic Intergenic 10015 ENSMUSG00000083052.1 ENSMUSG00000083052 ENSMUST00000117347 Gm12285 processed_pseudogene Interval_129693 chr5 121810570 121810893 + 0 NA promoter-TSS (ENSMUSG00000042605.16) protein_coding-promoter-TSS (ENSMUSG00000042605.16) 8542 ENSMUSG00000099063.1 ENSMUSG00000099063 ENSMUST00000183860 Mir7031 miRNA Interval_20522 chr10 118445641 118446435 + 0 NA TTS (ENSMUSG00000055170.4) protein_coding-TTS (ENSMUSG00000055170.4) 4619 ENSMUSG00000111913.1 ENSMUSG00000111913 ENSMUST00000219775 Gm49751 TEC Interval_132229 chr5 143481408 143481718 + 0 NA intron (ENSMUSG00000039206.13, intron 5 of 14) protein_coding-intron (ENSMUSG00000039206.13, intron 5 of 14) 8646 ENSMUSG00000039206.13 ENSMUSG00000039206 ENSMUST00000155383 Daglb protein_coding Interval_120646 chr4 149870295 149870759 + 0 NA Intergenic Intergenic -33479 ENSMUSG00000086767.1 ENSMUSG00000086767 ENSMUST00000146532 Gm13070 antisense Interval_169208 chr9 95511197 95512749 + 0 NA promoter-TSS (ENSMUSG00000032407.14) protein_coding-promoter-TSS (ENSMUSG00000032407.14) -88 ENSMUSG00000032407.14 ENSMUSG00000032407 ENSMUST00000188017 U2surp protein_coding Interval_78146 chr18 9325777 9326142 + 0 NA intron (ENSMUSG00000024286.8, intron 6 of 7) protein_coding-intron (ENSMUSG00000024286.8, intron 8 of 9) 21324 ENSMUSG00000117644.1 ENSMUSG00000117644 ENSMUST00000234891 Gm50053 processed_pseudogene Interval_136495 chr6 54934789 54935591 + 0 NA intron (ENSMUSG00000038058.14, intron 3 of 6) protein_coding-intron (ENSMUSG00000038058.14, intron 7 of 11) 4661 ENSMUSG00000038058.14 ENSMUSG00000038058 ENSMUST00000203837 Nod1 protein_coding Interval_103488 chr3 44400641 44401333 + 0 NA Intergenic Intergenic 92916 ENSMUSG00000104013.1 ENSMUSG00000104013 ENSMUST00000193109 Gm37365 processed_pseudogene Interval_85818 chr19 32142156 32143410 + 0 NA exon (ENSMUSG00000040451.18, exon 7 of 10) protein_coding-exon (ENSMUSG00000040451.18, exon 7 of 10) 66490 ENSMUSG00000118064.1 ENSMUSG00000118064 ENSMUST00000235377 Gm50210 sense_intronic Interval_127951 chr5 109790089 109790530 + 0 NA intron (ENSMUSG00000105471.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000105471.1, intron 1 of 1) 5989 ENSMUSG00000105471.1 ENSMUSG00000105471 ENSMUST00000196262 A430073D23Rik lincRNA Interval_121538 chr5 3308813 3309792 + 0 NA Intergenic Intergenic 38983 ENSMUSG00000106658.1 ENSMUSG00000106658 ENSMUST00000197473 Gm36548 lincRNA Interval_10102 chr1 165811016 165811267 + 0 NA intron (ENSMUSG00000005763.15, intron 1 of 8) protein_coding-intron (ENSMUSG00000005763.15, intron 1 of 7) -1399 ENSMUSG00000094394.1 ENSMUSG00000094394 ENSMUST00000178130 Gm23402 snRNA Interval_96810 chr2 128458595 128458792 + 0 NA exon (ENSMUSG00000114963.1, exon 6 of 8) lincRNA-exon (ENSMUSG00000114963.1, exon 6 of 8) 24970 ENSMUSG00000114963.1 ENSMUSG00000114963 ENSMUST00000224297 Gm29010 lincRNA Interval_128275 chr5 112227510 112229500 + 0 NA TTS (ENSMUSG00000099010.1) misc_RNA-TTS (ENSMUSG00000099010.1) 170 ENSMUSG00000097767.8 ENSMUSG00000097767 ENSMUST00000182699 Miat lincRNA Interval_58484 chr15 35124526 35125206 + 0 NA intron (ENSMUSG00000022329.15, intron 1 of 10) protein_coding-intron (ENSMUSG00000022329.15, intron 1 of 10) -75938 ENSMUSG00000115345.1 ENSMUSG00000115345 ENSMUST00000228112 Gm33497 lincRNA Interval_71315 chr17 22154148 22154659 + 0 NA intron (ENSMUSG00000063383.5, intron 2 of 4) protein_coding-intron (ENSMUSG00000063383.5, intron 2 of 4) 11787 ENSMUSG00000063383.5 ENSMUSG00000063383 ENSMUST00000080249 Zfp947 protein_coding Interval_3754 chr1 62813296 62813536 + 0 NA intron (ENSMUSG00000025969.15, intron 16 of 16) protein_coding-intron (ENSMUSG00000025969.15, intron 16 of 16) 4114 ENSMUSG00000103032.1 ENSMUSG00000103032 ENSMUST00000192219 Gm37121 TEC Interval_86519 chr19 41339191 41339676 + 0 NA intron (ENSMUSG00000025017.10, intron 2 of 8) protein_coding-intron (ENSMUSG00000025017.10, intron 2 of 16) 45669 ENSMUSG00000025017.10 ENSMUSG00000025017 ENSMUST00000235978 Pik3ap1 protein_coding Interval_77347 chr17 88111955 88112622 + 0 NA Intergenic Intergenic -13224 ENSMUSG00000058869.9 ENSMUSG00000058869 ENSMUST00000182679 Gm4832 transcribed_processed_pseudogene Interval_41153 chr12 111522497 111523212 + 0 NA Intergenic Intergenic -16725 ENSMUSG00000021282.17 ENSMUSG00000021282 ENSMUST00000221243 Eif5 protein_coding Interval_21555 chr10 129852750 129853515 + 0 NA Intergenic Intergenic -2235 ENSMUSG00000052818.5 ENSMUSG00000052818 ENSMUST00000064893 Olfr813 protein_coding Interval_33296 chr11 115767018 115767633 + 0 NA intron (ENSMUSG00000020747.18, intron 1 of 1) protein_coding-intron (ENSMUSG00000020747.18, intron 1 of 31) -13374 ENSMUSG00000020747.18 ENSMUSG00000020747 ENSMUST00000125918 Tmem94 protein_coding Interval_136808 chr6 60642056 60642979 + 0 NA Intergenic Intergenic 55739 ENSMUSG00000108003.1 ENSMUSG00000108003 ENSMUST00000204603 Gm35386 lincRNA Interval_116033 chr4 107124640 107124892 + 0 NA Intergenic Intergenic -1847 ENSMUSG00000085304.1 ENSMUSG00000085304 ENSMUST00000145510 Gm12802 antisense Interval_154095 chr8 12644039 12644424 + 0 NA intron (ENSMUSG00000000759.14, intron 11 of 15) protein_coding-intron (ENSMUSG00000000759.14, intron 11 of 21) -21864 ENSMUSG00000088641.1 ENSMUSG00000088641 ENSMUST00000158016 Gm26483 miRNA Interval_82009 chr18 67141272 67142155 + 0 NA exon (ENSMUSG00000024524.17, exon 5 of 5) protein_coding-exon (ENSMUSG00000024524.17, exon 5 of 5) 9659 ENSMUSG00000118131.1 ENSMUSG00000118131 ENSMUST00000237741 Gm50167 TEC Interval_13992 chr10 25327499 25327918 + 0 NA Intergenic Intergenic 29099 ENSMUSG00000112352.1 ENSMUSG00000112352 ENSMUST00000218840 Gm40617 antisense Interval_130383 chr5 127198627 127199259 + 0 NA Intergenic Intergenic 2154 ENSMUSG00000104778.1 ENSMUSG00000104778 ENSMUST00000197873 Gm43476 lincRNA Interval_122792 chr5 25532899 25533651 + 0 NA promoter-TSS (ENSMUSG00000105744.1) processed_pseudogene-promoter-TSS (ENSMUSG00000105744.1) -844 ENSMUSG00000105744.1 ENSMUSG00000105744 ENSMUST00000199695 Gm43141 processed_pseudogene Interval_40726 chr12 107960569 107961307 + 0 NA intron (ENSMUSG00000048251.15, intron 1 of 1) protein_coding-intron (ENSMUSG00000048251.15, intron 3 of 3) 42476 ENSMUSG00000048251.15 ENSMUSG00000048251 ENSMUST00000109891 Bcl11b protein_coding Interval_30389 chr11 94052307 94052533 + 0 NA intron (ENSMUSG00000020859.16, intron 2 of 15) protein_coding-intron (ENSMUSG00000020859.16, intron 2 of 26) 8850 ENSMUSG00000020859.16 ENSMUSG00000020859 ENSMUST00000153076 Spag9 protein_coding Interval_115395 chr4 98545318 98545583 + 0 NA intron (ENSMUSG00000061859.17, intron 27 of 44) protein_coding-intron (ENSMUSG00000061859.17, intron 27 of 43) 12415 ENSMUSG00000094456.1 ENSMUSG00000094456 ENSMUST00000175382 Gm22625 miRNA Interval_155438 chr8 33609567 33609810 + 0 NA intron (ENSMUSG00000009630.10, intron 1 of 6) protein_coding-intron (ENSMUSG00000009630.10, intron 1 of 6) 10063 ENSMUSG00000009630.10 ENSMUSG00000009630 ENSMUST00000009774 Ppp2cb protein_coding Interval_136745 chr6 58932302 58933353 + 0 NA exon (ENSMUSG00000037709.13, exon 18 of 18) protein_coding-exon (ENSMUSG00000037709.13, exon 18 of 18) -26154 ENSMUSG00000055430.4 ENSMUSG00000055430 ENSMUST00000205101 Nap1l5 protein_coding Interval_6660 chr1 118596929 118597822 + 0 NA intron (ENSMUSG00000064302.13, intron 12 of 14) protein_coding-intron (ENSMUSG00000064302.13, intron 37 of 39) -30570 ENSMUSG00000026380.10 ENSMUSG00000026380 ENSMUST00000027629 Tfcp2l1 protein_coding Interval_52209 chr14 40651549 40651806 + 0 NA Intergenic Intergenic 94439 ENSMUSG00000098169.1 ENSMUSG00000098169 ENSMUST00000182253 Gm5205 processed_pseudogene Interval_50891 chr14 20545709 20546733 + 0 NA promoter-TSS (ENSMUSG00000084925.8) antisense-promoter-TSS (ENSMUSG00000084925.8) -18525 ENSMUSG00000084925.8 ENSMUSG00000084925 ENSMUST00000124940 1810062O18Rik antisense Interval_140600 chr6 119992979 119994299 + 0 NA intron (ENSMUSG00000045962.16, intron 2 of 25) protein_coding-intron (ENSMUSG00000045962.16, intron 2 of 27) -12359 ENSMUSG00000089936.1 ENSMUSG00000089936 ENSMUST00000160032 Gm16199 processed_pseudogene Interval_120599 chr4 149607447 149609456 + 0 NA intron (ENSMUSG00000039953.13, intron 1 of 3) protein_coding-intron (ENSMUSG00000039953.13, intron 1 of 18) -18679 ENSMUSG00000039953.13 ENSMUSG00000039953 ENSMUST00000151895 Clstn1 protein_coding Interval_41681 chr12 117688602 117689168 + 0 NA promoter-TSS (ENSMUSG00000041992.9) protein_coding-promoter-TSS (ENSMUSG00000041992.9) -71 ENSMUSG00000041992.9 ENSMUSG00000041992 ENSMUST00000222035 Rapgef5 protein_coding Interval_112692 chr4 44112935 44114204 + 0 NA Intergenic Intergenic -9669 ENSMUSG00000084274.2 ENSMUSG00000084274 ENSMUST00000148026 Gm12504 transcribed_processed_pseudogene Interval_94379 chr2 90629559 90629772 + 0 NA Intergenic Intergenic -49018 ENSMUSG00000025314.16 ENSMUSG00000025314 ENSMUST00000168621 Ptprj protein_coding Interval_127701 chr5 106801655 106803332 + 0 NA Intergenic Intergenic -63729 ENSMUSG00000106301.1 ENSMUSG00000106301 ENSMUST00000197334 Gm8365 processed_pseudogene Interval_89815 chr2 25628042 25628584 + 0 NA promoter-TSS (ENSMUSG00000026938.10) protein_coding-promoter-TSS (ENSMUSG00000026938.10) 643 ENSMUSG00000052403.11 ENSMUSG00000052403 ENSMUST00000135799 Fcnaos antisense Interval_35962 chr12 32877494 32878716 + 0 NA promoter-TSS (ENSMUSG00000112166.1) lincRNA-promoter-TSS (ENSMUSG00000112166.1) -200 ENSMUSG00000112166.1 ENSMUSG00000112166 ENSMUST00000219636 Gm47948 lincRNA Interval_158808 chr8 86797590 86797916 + 0 NA Intergenic Intergenic -51819 ENSMUSG00000036840.5 ENSMUSG00000036840 ENSMUST00000045296 Siah1a protein_coding Interval_96270 chr2 121105328 121106876 + 0 NA intron (ENSMUSG00000079103.3, intron 3 of 11) protein_coding-intron (ENSMUSG00000079103.3, intron 4 of 12) 3690 ENSMUSG00000079103.3 ENSMUSG00000079103 ENSMUST00000238428 Tgm7 protein_coding Interval_37582 chr12 70062077 70062299 + 0 NA intron (ENSMUSG00000021068.17, intron 6 of 30) protein_coding-intron (ENSMUSG00000021068.17, intron 6 of 29) 28429 ENSMUSG00000021068.17 ENSMUSG00000021068 ENSMUST00000239242 Nin protein_coding Interval_39041 chr12 84617120 84618019 + 0 NA promoter-TSS (ENSMUSG00000021240.6) protein_coding-promoter-TSS (ENSMUSG00000021240.6) -156 ENSMUSG00000021240.6 ENSMUSG00000021240 ENSMUST00000221070 Abcd4 protein_coding Interval_8970 chr1 152814980 152815689 + 0 NA intron (ENSMUSG00000026480.12, intron 2 of 4) protein_coding-intron (ENSMUSG00000026480.12, intron 2 of 14) 7497 ENSMUSG00000026480.12 ENSMUSG00000026480 ENSMUST00000187235 Ncf2 protein_coding Interval_67958 chr16 60899266 60899875 + 0 NA Intergenic Intergenic -159191 ENSMUSG00000090882.1 ENSMUSG00000090882 ENSMUST00000165245 Gm17065 processed_pseudogene Interval_147179 chr7 64158970 64161259 + 0 NA intron (ENSMUSG00000030523.18, intron 1 of 7) protein_coding-intron (ENSMUSG00000030523.18, intron 1 of 26) 42410 ENSMUSG00000108645.1 ENSMUSG00000108645 ENSMUST00000206473 Gm44722 TEC Interval_16367 chr10 62513902 62514563 + 0 NA intron (ENSMUSG00000020077.14, intron 2 of 3) protein_coding-intron (ENSMUSG00000020077.14, intron 2 of 3) 13193 ENSMUSG00000020077.14 ENSMUSG00000020077 ENSMUST00000162956 Srgn protein_coding Interval_88993 chr2 14096372 14096606 + 0 NA intron (ENSMUSG00000026718.17, intron 1 of 6) protein_coding-intron (ENSMUSG00000026718.17, intron 1 of 12) 22267 ENSMUSG00000026718.17 ENSMUSG00000026718 ENSMUST00000131734 Stam protein_coding Interval_99071 chr2 157008849 157009112 + 0 NA Intergenic Intergenic -2406 ENSMUSG00000027635.15 ENSMUSG00000027635 ENSMUST00000154213 Dsn1 protein_coding Interval_77686 chr17 94275012 94275475 + 0 NA Intergenic Intergenic 53620 ENSMUSG00000077433.1 ENSMUSG00000077433 ENSMUST00000104245 Gm22593 snRNA Interval_88566 chr2 6192656 6193688 + 0 NA promoter-TSS (ENSMUSG00000087125.1) antisense-promoter-TSS (ENSMUSG00000087125.1) -79 ENSMUSG00000087125.1 ENSMUSG00000087125 ENSMUST00000151782 A230108P19Rik antisense Interval_61978 chr15 85609839 85611140 + 0 NA Intergenic Intergenic 30237 ENSMUSG00000097209.2 ENSMUSG00000097209 ENSMUST00000180441 AU022754 antisense Interval_95103 chr2 103912763 103912994 + 0 NA intron (ENSMUSG00000084756.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000084756.1, intron 1 of 1) 854 ENSMUSG00000084756.1 ENSMUSG00000084756 ENSMUST00000149025 Gm13881 lincRNA Interval_85628 chr19 29176724 29177520 + 0 NA Intergenic Intergenic 17004 ENSMUSG00000068466.6 ENSMUSG00000068466 ENSMUST00000084171 Gm5518 processed_pseudogene Interval_138670 chr6 91014385 91015429 + 0 NA intron (ENSMUSG00000030091.17, intron 39 of 39) protein_coding-intron (ENSMUSG00000030091.17, intron 39 of 39) 83715 ENSMUSG00000030091.17 ENSMUSG00000030091 ENSMUST00000203434 Nup210 protein_coding Interval_79839 chr18 35497646 35499410 + 0 NA promoter-TSS (ENSMUSG00000118386.1) antisense-promoter-TSS (ENSMUSG00000118386.1) -133 ENSMUSG00000118386.1 ENSMUSG00000118386 ENSMUST00000238050 Gm50149 antisense Interval_58181 chr15 30399391 30399641 + 0 NA intron (ENSMUSG00000022240.10, intron 2 of 2) protein_coding-intron (ENSMUSG00000022240.10, intron 2 of 22) -29328 ENSMUSG00000115073.1 ENSMUSG00000115073 ENSMUST00000226263 Gm49283 TEC Interval_42330 chr13 12153888 12154294 + 0 NA Intergenic Intergenic -6663 ENSMUSG00000113347.1 ENSMUSG00000113347 ENSMUST00000220496 Gm47323 processed_pseudogene Interval_83031 chr18 80614855 80615196 + 0 NA intron (ENSMUSG00000033016.16, intron 9 of 9) protein_coding-intron (ENSMUSG00000033016.16, intron 9 of 9) -6050 ENSMUSG00000033016.16 ENSMUSG00000033016 ENSMUST00000236711 Nfatc1 protein_coding Interval_126398 chr5 87951453 87953441 + 0 NA intron (ENSMUSG00000099605.1, intron 2 of 4) antisense-intron (ENSMUSG00000099605.1, intron 2 of 4) -11038 ENSMUSG00000055961.7 ENSMUSG00000055961 ENSMUST00000199477 BC051076 antisense Interval_84991 chr19 21045259 21045893 + 0 NA Intergenic Intergenic -59134 ENSMUSG00000118047.1 ENSMUSG00000118047 ENSMUST00000237768 4930554I06Rik lincRNA Interval_64923 chr16 17251957 17253247 + 0 NA intron (ENSMUSG00000116743.1, intron 1 of 3) protein_coding-intron (ENSMUSG00000050240.16, intron 1 of 2) 18938 ENSMUSG00000050240.16 ENSMUSG00000050240 ENSMUST00000232082 Hic2 protein_coding Interval_141255 chr6 126577875 126578095 + 0 NA Intergenic Intergenic -21816 ENSMUSG00000110390.1 ENSMUSG00000110390 ENSMUST00000210335 Gm45869 lincRNA Interval_158443 chr8 83763204 83763586 + 0 NA Intergenic Intergenic 10477 ENSMUSG00000084682.1 ENSMUSG00000084682 ENSMUST00000122733 Gm22024 misc_RNA Interval_110469 chr3 158854296 158854717 + 0 NA Intergenic Intergenic -105940 ENSMUSG00000097966.1 ENSMUSG00000097966 ENSMUST00000183173 Gm9423 processed_pseudogene Interval_133298 chr5 151315932 151316375 + 0 NA intron (ENSMUSG00000107011.1, intron 1 of 5) protein_coding-intron (ENSMUSG00000107011.1, intron 1 of 5) 35030 ENSMUSG00000107154.1 ENSMUSG00000107154 ENSMUST00000201227 Gm7041 processed_pseudogene Interval_40883 chr12 109067373 109068891 + 0 NA promoter-TSS (ENSMUSG00000040867.13) protein_coding-promoter-TSS (ENSMUSG00000040867.13) -14357 ENSMUSG00000040867.13 ENSMUSG00000040867 ENSMUST00000185745 Begain protein_coding Interval_92230 chr2 57213403 57213571 + 0 NA TTS (ENSMUSG00000080812.1) processed_pseudogene-TTS (ENSMUSG00000080812.1) 755 ENSMUSG00000080812.1 ENSMUSG00000080812 ENSMUST00000117970 Gm13526 processed_pseudogene Interval_121859 chr5 8912787 8913279 + 0 NA promoter-TSS (ENSMUSG00000106664.1) processed_pseudogene-promoter-TSS (ENSMUSG00000106664.1) 62 ENSMUSG00000106664.1 ENSMUSG00000106664 ENSMUST00000199413 Gm17936 processed_pseudogene Interval_10710 chr1 173402372 173402659 + 0 NA intron (ENSMUSG00000037860.15, intron 2 of 11) protein_coding-intron (ENSMUSG00000037860.15, intron 2 of 11) -34867 ENSMUSG00000005338.13 ENSMUSG00000005338 ENSMUST00000126963 Cadm3 protein_coding Interval_31385 chr11 100365757 100366060 + 0 NA Intergenic Intergenic -3782 ENSMUSG00000091478.2 ENSMUSG00000091478 ENSMUST00000081241 Gm10039 processed_pseudogene Interval_150599 chr7 112731756 112732084 + 0 NA intron (ENSMUSG00000055320.18, intron 2 of 2) protein_coding-intron (ENSMUSG00000055320.18, intron 1 of 13) 17969 ENSMUSG00000106046.1 ENSMUSG00000106046 ENSMUST00000199696 Gm44462 miRNA Interval_61659 chr15 83249602 83249955 + 0 NA intron (ENSMUSG00000047878.13, intron 1 of 2) protein_coding-intron (ENSMUSG00000047878.13, intron 1 of 2) 1951 ENSMUSG00000047878.13 ENSMUSG00000047878 ENSMUST00000229454 A4galt protein_coding Interval_171886 chr9 122069487 122069913 + 0 NA Intergenic Intergenic -18342 ENSMUSG00000111389.1 ENSMUSG00000111389 ENSMUST00000215177 Gm39465 lincRNA Interval_148571 chr7 82762876 82763166 + 0 NA exon (ENSMUSG00000038563.14, exon 18 of 20) protein_coding-exon (ENSMUSG00000038563.14, exon 18 of 20) -7377 ENSMUSG00000086690.1 ENSMUSG00000086690 ENSMUST00000144828 4933406J10Rik antisense Interval_82293 chr18 70292969 70293197 + 0 NA Intergenic Intergenic -16783 ENSMUSG00000118497.1 ENSMUSG00000118497 ENSMUST00000239144 AC124764.1 protein_coding Interval_107690 chr3 111092742 111094055 + 0 NA Intergenic Intergenic -15102 ENSMUSG00000106487.1 ENSMUSG00000106487 ENSMUST00000199816 Gm43407 processed_pseudogene Interval_73725 chr17 43012849 43013057 + 0 NA Intergenic Intergenic -3615 ENSMUSG00000023915.5 ENSMUSG00000023915 ENSMUST00000233482 Tnfrsf21 protein_coding Interval_66234 chr16 32477696 32478024 + 0 NA intron (ENSMUSG00000035699.8, intron 5 of 6) protein_coding-intron (ENSMUSG00000035699.8, intron 5 of 8) 9843 ENSMUSG00000035699.8 ENSMUSG00000035699 ENSMUST00000232418 Slc51a protein_coding Interval_131792 chr5 139907008 139909468 + 0 NA promoter-TSS (ENSMUSG00000048988.8) protein_coding-promoter-TSS (ENSMUSG00000048988.8) -236 ENSMUSG00000048988.8 ENSMUSG00000048988 ENSMUST00000198608 Elfn1 protein_coding Interval_116257 chr4 109079675 109080867 + 0 NA intron (ENSMUSG00000028559.17, intron 5 of 8) protein_coding-intron (ENSMUSG00000028559.17, intron 12 of 23) 56065 ENSMUSG00000053510.12 ENSMUSG00000053510 ENSMUST00000125063 Nrd1 protein_coding Interval_89077 chr2 15763714 15763926 + 0 NA intron (ENSMUSG00000075520.5, intron 18 of 38) protein_coding-intron (ENSMUSG00000075520.5, intron 18 of 38) -193105 ENSMUSG00000081245.2 ENSMUSG00000081245 ENSMUST00000120219 Gm6587 processed_pseudogene Interval_118637 chr4 132930141 132931032 + 0 NA TTS (ENSMUSG00000087911.1) snRNA-TTS (ENSMUSG00000087911.1) 731 ENSMUSG00000087911.1 ENSMUSG00000087911 ENSMUST00000157286 Gm24913 snRNA Interval_172995 chrX 60772220 60773254 + 0 NA intron (ENSMUSG00000067835.4, intron 7 of 11) antisense-intron (ENSMUSG00000067835.4, intron 7 of 11) -45289 ENSMUSG00000084331.1 ENSMUSG00000084331 ENSMUST00000122020 Gm8163 processed_pseudogene Interval_63758 chr15 103268442 103269267 + 0 NA Intergenic Intergenic -4058 ENSMUSG00000060992.9 ENSMUSG00000060992 ENSMUST00000230893 Copz1 protein_coding Interval_15712 chr10 54074161 54076323 + 0 NA promoter-TSS (ENSMUSG00000097069.1) bidirectional_promoter_lncRNA-promoter-TSS (ENSMUSG00000097069.1) -680 ENSMUSG00000097069.1 ENSMUSG00000097069 ENSMUST00000181899 Gm16998 bidirectional_promoter_lncRNA Interval_152145 chr7 130091026 130092235 + 0 NA Intergenic Intergenic 56536 ENSMUSG00000065763.1 ENSMUSG00000065763 ENSMUST00000083829 Gm23847 snRNA Interval_14160 chr10 28184793 28187177 + 0 NA intron (ENSMUSG00000019889.10, intron 1 of 2) protein_coding-intron (ENSMUSG00000019889.10, intron 1 of 31) 28136 ENSMUSG00000076377.1 ENSMUSG00000076377 ENSMUST00000102422 Gm22370 miRNA Interval_1554 chr1 25696435 25696791 + 0 NA intron (ENSMUSG00000033569.17, intron 1 of 8) protein_coding-intron (ENSMUSG00000033569.17, intron 1 of 29) -5112 ENSMUSG00000102317.1 ENSMUSG00000102317 ENSMUST00000194644 Gm37628 TEC Interval_125877 chr5 75248395 75248915 + 0 NA Intergenic Intergenic 2212 ENSMUSG00000106704.1 ENSMUSG00000106704 ENSMUST00000201331 Gm42799 processed_pseudogene Interval_150973 chr7 117031077 117031400 + 0 NA Intergenic Intergenic -78543 ENSMUSG00000064971.1 ENSMUSG00000064971 ENSMUST00000083037 Gm26054 snRNA Interval_13542 chr10 19352625 19353468 + 0 NA Intergenic Intergenic -3487 ENSMUSG00000045591.6 ENSMUSG00000045591 ENSMUST00000053225 Olig3 protein_coding Interval_108852 chr3 132659769 132660344 + 0 NA TTS (ENSMUSG00000028029.11) protein_coding-TTS (ENSMUSG00000028029.11) -4274 ENSMUSG00000106313.1 ENSMUSG00000106313 ENSMUST00000196849 Gm9402 processed_pseudogene Interval_24097 chr11 30217301 30217745 + 0 NA exon (ENSMUSG00000020315.18, exon 2 of 2) protein_coding-exon (ENSMUSG00000020315.18, exon 2 of 2) -49941 ENSMUSG00000073073.4 ENSMUSG00000073073 ENSMUST00000146985 Gm8098 processed_transcript Interval_164208 chr9 32545687 32545951 + 0 NA Intergenic Intergenic -2958 ENSMUSG00000016087.13 ENSMUSG00000016087 ENSMUST00000183767 Fli1 protein_coding Interval_107552 chr3 108451768 108452764 + 0 NA promoter-TSS (ENSMUSG00000106101.1) processed_pseudogene-promoter-TSS (ENSMUSG00000106101.1) -618 ENSMUSG00000106101.1 ENSMUSG00000106101 ENSMUST00000198133 Gm43438 processed_pseudogene Interval_147222 chr7 64774600 64774819 + 0 NA intron (ENSMUSG00000030518.17, intron 6 of 6) protein_coding-intron (ENSMUSG00000030518.17, intron 7 of 9) 30126 ENSMUSG00000030519.14 ENSMUSG00000030519 ENSMUST00000206630 Apba2 protein_coding Interval_162837 chr9 10172932 10173120 + 0 NA intron (ENSMUSG00000039488.15, intron 3 of 24) protein_coding-intron (ENSMUSG00000039488.15, intron 1 of 22) 117561 ENSMUSG00000093959.1 ENSMUSG00000093959 ENSMUST00000178287 Gm24496 miRNA Interval_75548 chr17 67947004 67948892 + 0 NA intron (ENSMUSG00000024043.13, intron 1 of 17) protein_coding-intron (ENSMUSG00000024043.13, intron 1 of 17) -74900 ENSMUSG00000024043.13 ENSMUSG00000024043 ENSMUST00000170581 Arhgap28 protein_coding Interval_144338 chr7 24553359 24553862 + 0 NA intron (ENSMUSG00000051768.9, intron 2 of 5) protein_coding-intron (ENSMUSG00000051768.9, intron 2 of 16) 6409 ENSMUSG00000051768.9 ENSMUSG00000051768 ENSMUST00000205453 Xrcc1 protein_coding Interval_32275 chr11 106648052 106649095 + 0 NA Intergenic Intergenic 14753 ENSMUSG00000020717.19 ENSMUSG00000020717 ENSMUST00000124958 Pecam1 protein_coding Interval_85913 chr19 32974710 32975201 + 0 NA TTS (ENSMUSG00000117664.1) lincRNA-TTS (ENSMUSG00000117664.1) -4647 ENSMUSG00000084512.1 ENSMUSG00000084512 ENSMUST00000122563 Gm22482 misc_RNA Interval_7475 chr1 131690342 131690882 + 0 NA intron (ENSMUSG00000052688.12, intron 1 of 5) protein_coding-intron (ENSMUSG00000052688.12, intron 1 of 4) 1874 ENSMUSG00000052688.12 ENSMUSG00000052688 ENSMUST00000130848 Rab7b protein_coding Interval_131167 chr5 135550727 135551159 + 0 NA Intergenic Intergenic 12626 ENSMUSG00000070464.1 ENSMUSG00000070464 ENSMUST00000094226 Ccl26 protein_coding Interval_86943 chr19 45113532 45114611 + 0 NA Intergenic Intergenic 27020 ENSMUSG00000117848.1 ENSMUSG00000117848 ENSMUST00000237139 Gm35867 lincRNA Interval_100518 chr2 169849010 169849865 + 0 NA intron (ENSMUSG00000047907.11, intron 1 of 2) protein_coding-intron (ENSMUSG00000047907.11, intron 1 of 1) -35456 ENSMUSG00000047907.11 ENSMUSG00000047907 ENSMUST00000140699 Tshz2 protein_coding Interval_4227 chr1 71778202 71778542 + 0 NA Intergenic Intergenic -63448 ENSMUSG00000100319.1 ENSMUSG00000100319 ENSMUST00000191412 Gm5256 processed_pseudogene Interval_87545 chr19 53362744 53363527 + 0 NA intron (ENSMUSG00000025025.14, intron 3 of 5) protein_coding-intron (ENSMUSG00000025025.14, intron 3 of 5) 8631 ENSMUSG00000067085.1 ENSMUSG00000067085 ENSMUST00000086887 Gm10197 protein_coding Interval_154516 chr8 18855785 18856545 + 0 NA intron (ENSMUSG00000031467.10, intron 1 of 7) protein_coding-intron (ENSMUSG00000031467.10, intron 1 of 7) -6031 ENSMUSG00000109784.1 ENSMUSG00000109784 ENSMUST00000209494 Gm45493 TEC Interval_27278 chr11 65195368 65195826 + 0 NA TTS (ENSMUSG00000020542.18) protein_coding-TTS (ENSMUSG00000020542.18) -13440 ENSMUSG00000020542.18 ENSMUSG00000020542 ENSMUST00000150823 Myocd protein_coding Interval_98690 chr2 154335504 154336269 + 0 NA intron (ENSMUSG00000027487.11, intron 14 of 14) protein_coding-intron (ENSMUSG00000027487.11, intron 13 of 13) 18458 ENSMUSG00000027487.11 ENSMUSG00000027487 ENSMUST00000137918 Cdk5rap1 protein_coding Interval_17821 chr10 80274874 80275189 + 0 NA intron (ENSMUSG00000069565.12, intron 4 of 6) protein_coding-intron (ENSMUSG00000069565.12, intron 4 of 11) -3133 ENSMUSG00000098672.1 ENSMUSG00000098672 ENSMUST00000184241 Mir6911 miRNA Interval_1823 chr1 34020562 34021462 + 0 NA intron (ENSMUSG00000026131.20, intron 1 of 97) protein_coding-intron (ENSMUSG00000026131.20, intron 1 of 97) -11088 ENSMUSG00000103364.1 ENSMUSG00000103364 ENSMUST00000194178 Gm38157 TEC Interval_173356 chrX 84159333 84160807 + 0 NA intron (ENSMUSG00000045103.19, intron 1 of 2) protein_coding-intron (ENSMUSG00000045103.19, intron 44 of 78) 96737 ENSMUSG00000081583.1 ENSMUSG00000081583 ENSMUST00000118590 Gm14769 processed_pseudogene Interval_56056 chr14 105179158 105179534 + 0 NA Intergenic Intergenic 5039 ENSMUSG00000115831.1 ENSMUSG00000115831 ENSMUST00000226837 Gm48937 processed_pseudogene Interval_155364 chr8 32518743 32519159 + 0 NA intron (ENSMUSG00000062991.9, intron 1 of 12) protein_coding-intron (ENSMUSG00000062991.9, intron 1 of 8) 332822 ENSMUSG00000089370.1 ENSMUSG00000089370 ENSMUST00000158745 Gm22140 snRNA Interval_64207 chr16 9162094 9162380 + 0 NA TTS (ENSMUSG00000116123.1) lincRNA-TTS (ENSMUSG00000116123.1) 3467 ENSMUSG00000116123.1 ENSMUSG00000116123 ENSMUST00000229655 Gm49451 lincRNA Interval_69557 chr16 94226136 94228287 + 0 NA intron (ENSMUSG00000040820.16, intron 2 of 6) protein_coding-intron (ENSMUSG00000040820.16, intron 5 of 9) -4199 ENSMUSG00000115044.1 ENSMUSG00000115044 ENSMUST00000227277 Gm48978 TEC Interval_114960 chr4 87707028 87708235 + 0 NA Intergenic Intergenic 98692 ENSMUSG00000028496.17 ENSMUSG00000028496 ENSMUST00000142454 Mllt3 protein_coding Interval_91693 chr2 48044918 48046661 + 0 NA Intergenic Intergenic -94357 ENSMUSG00000082278.1 ENSMUSG00000082278 ENSMUST00000122057 Gm13471 processed_pseudogene Interval_53143 chr14 54694482 54694739 + 0 NA TTS (ENSMUSG00000114865.2) protein_coding-TTS (ENSMUSG00000114865.2) 4190 ENSMUSG00000114865.2 ENSMUSG00000114865 ENSMUST00000227947 Gm29776 protein_coding Interval_96505 chr2 125150935 125151276 + 0 NA Intergenic Intergenic -1475 ENSMUSG00000027202.12 ENSMUSG00000027202 ENSMUST00000028630 Slc12a1 protein_coding Interval_144226 chr7 23357459 23357946 + 0 NA exon (ENSMUSG00000109325.1, exon 1 of 1) processed_pseudogene-exon (ENSMUSG00000109325.1, exon 1 of 1) 577 ENSMUSG00000109325.1 ENSMUSG00000109325 ENSMUST00000208495 Krt8-ps processed_pseudogene Interval_101409 chr2 181105248 181105554 + 0 NA intron (ENSMUSG00000016346.17, intron 2 of 8) protein_coding-intron (ENSMUSG00000016346.17, intron 7 of 16) 4355 ENSMUSG00000016346.17 ENSMUSG00000016346 ENSMUST00000140789 Kcnq2 protein_coding Interval_157688 chr8 72305150 72305663 + 0 NA promoter-TSS (ENSMUSG00000070713.5) protein_coding-promoter-TSS (ENSMUSG00000070713.5) -146 ENSMUSG00000070713.5 ENSMUSG00000070713 ENSMUST00000075602 Gm10282 protein_coding Interval_112856 chr4 45552475 45552938 + 0 NA Intergenic Intergenic 2689 ENSMUSG00000081559.3 ENSMUSG00000081559 ENSMUST00000119140 Gm12411 processed_pseudogene Interval_167075 chr9 65082757 65084811 + 0 NA intron (ENSMUSG00000111471.1, intron 1 of 4) antisense-intron (ENSMUSG00000111471.1, intron 1 of 4) 10571 ENSMUSG00000111471.1 ENSMUSG00000111471 ENSMUST00000214559 Gm47350 antisense Interval_104311 chr3 63243728 63244637 + 0 NA intron (ENSMUSG00000027820.12, intron 1 of 5) protein_coding-intron (ENSMUSG00000027820.12, intron 1 of 5) -51084 ENSMUSG00000027820.12 ENSMUSG00000027820 ENSMUST00000193805 Mme protein_coding Interval_103173 chr3 36279667 36279870 + 0 NA Intergenic Intergenic -5108 ENSMUSG00000106140.1 ENSMUSG00000106140 ENSMUST00000198215 Gm42208 lincRNA Interval_152500 chr7 133594291 133594918 + 0 NA intron (ENSMUSG00000030976.3, intron 2 of 3) protein_coding-intron (ENSMUSG00000030976.3, intron 2 of 3) 7554 ENSMUSG00000030976.3 ENSMUSG00000030976 ENSMUST00000033275 Tex36 protein_coding Interval_127056 chr5 99993195 99993390 + 0 NA Intergenic Intergenic -14354 ENSMUSG00000000568.15 ENSMUSG00000000568 ENSMUST00000170912 Hnrnpd protein_coding Interval_116528 chr4 115052652 115053049 + 0 NA Intergenic Intergenic -6658 ENSMUSG00000028717.12 ENSMUSG00000028717 ENSMUST00000162489 Tal1 protein_coding Interval_134327 chr6 25266376 25266542 + 0 NA Intergenic Intergenic -66408 ENSMUSG00000089442.1 ENSMUSG00000089442 ENSMUST00000158817 Gm22529 snoRNA Interval_142720 chr6 145144938 145145515 + 0 NA promoter-TSS (ENSMUSG00000030263.13) protein_coding-promoter-TSS (ENSMUSG00000030263.13) 171 ENSMUSG00000107420.1 ENSMUSG00000107420 ENSMUST00000204561 Gm43910 TEC Interval_30569 chr11 95160609 95161441 + 0 NA Intergenic Intergenic -15224 ENSMUSG00000020871.8 ENSMUSG00000020871 ENSMUST00000146838 Dlx4 protein_coding Interval_53228 chr14 55357251 55359125 + 0 NA Intergenic Intergenic -7498 ENSMUSG00000115125.1 ENSMUSG00000115125 ENSMUST00000227916 Gm6852 processed_pseudogene Interval_7851 chr1 134122017 134122619 + 0 NA intron (ENSMUSG00000026450.14, intron 1 of 10) protein_coding-intron (ENSMUSG00000026450.14, intron 1 of 11) 11076 ENSMUSG00000026450.14 ENSMUSG00000026450 ENSMUST00000086475 Chit1 protein_coding Interval_171783 chr9 121059526 121059772 + 0 NA intron (ENSMUSG00000040936.15, intron 34 of 36) protein_coding-intron (ENSMUSG00000040936.15, intron 4 of 7) -99142 ENSMUSG00000040936.15 ENSMUSG00000040936 ENSMUST00000164969 Ulk4 protein_coding Interval_145584 chr7 35723030 35723263 + 0 NA exon (ENSMUSG00000043671.14, exon 1 of 4) protein_coding-exon (ENSMUSG00000043671.14, exon 1 of 4) -14581 ENSMUSG00000043671.14 ENSMUSG00000043671 ENSMUST00000124116 Dpy19l3 protein_coding Interval_76259 chr17 78569021 78569663 + 0 NA intron (ENSMUSG00000024076.10, intron 3 of 12) protein_coding-intron (ENSMUSG00000024076.10, intron 4 of 13) -4586 ENSMUSG00000024076.10 ENSMUSG00000024076 ENSMUST00000232864 Vit protein_coding Interval_19485 chr10 100094164 100094457 + 0 NA intron (ENSMUSG00000019966.18, intron 2 of 2) protein_coding-intron (ENSMUSG00000019966.18, intron 8 of 8) 6254 ENSMUSG00000019966.18 ENSMUSG00000019966 ENSMUST00000219881 Kitl protein_coding Interval_69730 chr16 95905601 95906443 + 0 NA intron (ENSMUSG00000117232.1, intron 1 of 4) lincRNA-intron (ENSMUSG00000117232.1, intron 1 of 4) 5624 ENSMUSG00000085903.1 ENSMUSG00000085903 ENSMUST00000144984 Gm15340 lincRNA Interval_49449 chr13 112100224 112101542 + 0 NA Intergenic Intergenic -37233 ENSMUSG00000114361.1 ENSMUSG00000114361 ENSMUST00000224924 Gm31104 processed_pseudogene Interval_142830 chr6 146271563 146273064 + 0 NA intron (ENSMUSG00000030287.15, intron 36 of 55) protein_coding-intron (ENSMUSG00000030287.15, intron 37 of 56) -1333 ENSMUSG00000107801.1 ENSMUSG00000107801 ENSMUST00000203251 Gm44086 TEC Interval_148905 chr7 89952928 89954485 + 0 NA TTS (ENSMUSG00000030619.10) protein_coding-TTS (ENSMUSG00000030619.10) 11688 ENSMUSG00000109038.1 ENSMUSG00000109038 ENSMUST00000208880 Gm45120 TEC Interval_148312 chr7 80440298 80441073 + 0 NA Intergenic Intergenic 11475 ENSMUSG00000081664.1 ENSMUSG00000081664 ENSMUST00000118776 Gm15544 processed_pseudogene Interval_114696 chr4 83934480 83935490 + 0 NA Intergenic Intergenic -46127 ENSMUSG00000085378.1 ENSMUSG00000085378 ENSMUST00000128214 Gm11415 lincRNA Interval_16545 chr10 63523235 63524939 + 0 NA intron (ENSMUSG00000060843.11, intron 2 of 17) protein_coding-intron (ENSMUSG00000060843.11, intron 1 of 16) -102298 ENSMUSG00000048185.5 ENSMUSG00000048185 ENSMUST00000054760 Gm7075 protein_coding Interval_168922 chr9 88938459 88938894 + 0 NA Intergenic Intergenic -1334 ENSMUSG00000099930.1 ENSMUSG00000099930 ENSMUST00000185501 Gm2396 processed_transcript Interval_38921 chr12 83812731 83813243 + 0 NA intron (ENSMUSG00000021224.15, intron 3 of 3) protein_coding-intron (ENSMUSG00000021224.15, intron 3 of 8) -10468 ENSMUSG00000114150.1 ENSMUSG00000114150 ENSMUST00000221695 Gm46367 processed_transcript Interval_74455 chr17 50774105 50774345 + 0 NA intron (ENSMUSG00000023923.10, intron 18 of 21) protein_coding-intron (ENSMUSG00000023923.10, intron 18 of 21) 75537 ENSMUSG00000044645.8 ENSMUSG00000044645 ENSMUST00000061681 Gm7334 processed_pseudogene Interval_24168 chr11 30870278 30870708 + 0 NA intron (ENSMUSG00000040850.17, intron 2 of 2) protein_coding-intron (ENSMUSG00000040850.17, intron 43 of 46) 5024 ENSMUSG00000040850.17 ENSMUSG00000040850 ENSMUST00000155719 Psme4 protein_coding Interval_51644 chr14 31049647 31049904 + 0 NA intron (ENSMUSG00000042323.17, intron 10 of 25) protein_coding-intron (ENSMUSG00000042323.17, intron 10 of 27) -6655 ENSMUSG00000115412.1 ENSMUSG00000115412 ENSMUST00000226537 Gm49094 processed_pseudogene Interval_126253 chr5 84377539 84379218 + 0 NA intron (ENSMUSG00000029245.16, intron 2 of 3) protein_coding-intron (ENSMUSG00000029245.16, intron 2 of 15) -16312 ENSMUSG00000029245.16 ENSMUSG00000029245 ENSMUST00000200076 Epha5 protein_coding Interval_14831 chr10 40359174 40359583 + 0 NA intron (ENSMUSG00000038481.13, intron 1 of 11) protein_coding-intron (ENSMUSG00000038481.13, intron 1 of 12) -9275 ENSMUSG00000038491.9 ENSMUSG00000038491 ENSMUST00000044774 Cdk19os antisense Interval_153974 chr8 11576690 11577351 + 0 NA Intergenic Intergenic 21449 ENSMUSG00000045969.8 ENSMUSG00000045969 ENSMUST00000209565 Ing1 protein_coding Interval_164489 chr9 37452357 37452814 + 0 NA Intergenic Intergenic 26058 ENSMUSG00000111702.1 ENSMUSG00000111702 ENSMUST00000214167 Gm47945 unprocessed_pseudogene Interval_141362 chr6 127681005 127681300 + 0 NA Intergenic Intergenic 36712 ENSMUSG00000107253.1 ENSMUSG00000107253 ENSMUST00000202671 Gm43634 lincRNA Interval_100102 chr2 167081272 167081484 + 0 NA Intergenic Intergenic 6361 ENSMUSG00000081946.1 ENSMUSG00000081946 ENSMUST00000121305 Gm11472 processed_pseudogene Interval_28956 chr11 79562712 79562977 + 0 NA intron (ENSMUSG00000020716.16, intron 14 of 17) protein_coding-intron (ENSMUSG00000020716.16, intron 51 of 57) -32235 ENSMUSG00000078771.10 ENSMUSG00000078771 ENSMUST00000133148 Evi2a protein_coding Interval_41680 chr12 117683699 117684889 + 0 NA intron (ENSMUSG00000041992.9, intron 1 of 17) protein_coding-intron (ENSMUSG00000041992.9, intron 11 of 27) -4662 ENSMUSG00000041992.9 ENSMUSG00000041992 ENSMUST00000222035 Rapgef5 protein_coding Interval_43865 chr13 37709508 37709720 + 0 NA intron (ENSMUSG00000114732.1, intron 2 of 4) lincRNA-intron (ENSMUSG00000114732.1, intron 1 of 2) 8034 ENSMUSG00000114732.1 ENSMUSG00000114732 ENSMUST00000224732 Gm40918 lincRNA Interval_23706 chr11 24881896 24882216 + 0 NA Intergenic Intergenic 43994 ENSMUSG00000087145.7 ENSMUSG00000087145 ENSMUST00000126063 Gm12665 lincRNA Interval_145558 chr7 35617333 35618087 + 0 NA intron (ENSMUSG00000034867.16, intron 17 of 26) protein_coding-intron (ENSMUSG00000034867.16, intron 17 of 28) -1769 ENSMUSG00000034867.16 ENSMUSG00000034867 ENSMUST00000206632 Ankrd27 protein_coding Interval_160858 chr8 113975566 113976186 + 0 NA Intergenic Intergenic -130572 ENSMUSG00000053399.9 ENSMUSG00000053399 ENSMUST00000212527 Adamts18 protein_coding Interval_145959 chr7 42666989 42668303 + 0 NA intron (ENSMUSG00000069727.5, intron 1 of 3) protein_coding-intron (ENSMUSG00000069727.5, intron 1 of 3) 25096 ENSMUSG00000069727.5 ENSMUSG00000069727 ENSMUST00000206356 Zfp975 protein_coding Interval_99131 chr2 157388361 157389952 + 0 NA intron (ENSMUSG00000063019.5, intron 2 of 2) protein_coding-intron (ENSMUSG00000063019.5, intron 2 of 2) 21562 ENSMUSG00000063019.5 ENSMUSG00000063019 ENSMUST00000081202 Manbal protein_coding Interval_39284 chr12 86462963 86464868 + 0 NA intron (ENSMUSG00000021255.17, intron 1 of 6) protein_coding-intron (ENSMUSG00000021255.17, intron 1 of 6) -6202 ENSMUSG00000021255.17 ENSMUSG00000021255 ENSMUST00000136464 Esrrb protein_coding Interval_131092 chr5 135041697 135042953 + 0 NA intron (ENSMUSG00000007207.10, intron 5 of 6) protein_coding-intron (ENSMUSG00000007207.10, intron 6 of 9) 11791 ENSMUSG00000088008.1 ENSMUSG00000088008 ENSMUST00000157383 Gm25492 scaRNA Interval_67180 chr16 44172354 44173874 + 0 NA promoter-TSS (ENSMUSG00000068284.14) protein_coding-promoter-TSS (ENSMUSG00000068284.14) -283 ENSMUSG00000068284.14 ENSMUSG00000068284 ENSMUST00000169582 Usf3 protein_coding Interval_65313 chr16 21450146 21451075 + 0 NA intron (ENSMUSG00000033653.18, intron 7 of 46) protein_coding-intron (ENSMUSG00000033653.18, intron 7 of 43) -82502 ENSMUSG00000033653.18 ENSMUSG00000033653 ENSMUST00000127903 Vps8 protein_coding Interval_153969 chr8 11557610 11558515 + 0 NA promoter-TSS (ENSMUSG00000045969.8) protein_coding-promoter-TSS (ENSMUSG00000045969.8) 2491 ENSMUSG00000045969.8 ENSMUSG00000045969 ENSMUST00000209565 Ing1 protein_coding Interval_68766 chr16 85820027 85820226 + 0 NA intron (ENSMUSG00000116586.1, intron 1 of 3) lincRNA-intron (ENSMUSG00000116586.1, intron 1 of 3) 915 ENSMUSG00000116586.1 ENSMUSG00000116586 ENSMUST00000231357 4930556C24Rik lincRNA Interval_70607 chr17 12265844 12267454 + 0 NA promoter-TSS (ENSMUSG00000014426.9) protein_coding-promoter-TSS (ENSMUSG00000014426.9) -13468 ENSMUSG00000117325.1 ENSMUSG00000117325 ENSMUST00000233669 Gm49962 processed_pseudogene Interval_4012 chr1 66386608 66387251 + 0 NA promoter-TSS (ENSMUSG00000015222.18) protein_coding-promoter-TSS (ENSMUSG00000015222.18) 24733 ENSMUSG00000015222.18 ENSMUSG00000015222 ENSMUST00000172486 Map2 protein_coding Interval_167621 chr9 71209181 71209821 + 0 NA Intergenic Intergenic -6288 ENSMUSG00000013584.5 ENSMUSG00000013584 ENSMUST00000034723 Aldh1a2 protein_coding Interval_148951 chr7 90280180 90280924 + 0 NA Intergenic Intergenic -13182 ENSMUSG00000084480.1 ENSMUSG00000084480 ENSMUST00000122531 n-R5s155 rRNA Interval_172061 chr9 124147923 124148496 + 0 NA TTS (ENSMUSG00000079227.10) protein_coding-TTS (ENSMUSG00000079227.10) 21525 ENSMUSG00000079227.10 ENSMUSG00000079227 ENSMUST00000097855 Ccr5 protein_coding Interval_138649 chr6 90735824 90737758 + 0 NA promoter-TSS (ENSMUSG00000034312.15) protein_coding-promoter-TSS (ENSMUSG00000034312.15) 45290 ENSMUSG00000034312.15 ENSMUSG00000034312 ENSMUST00000238855 Iqsec1 protein_coding Interval_56702 chr14 121466461 121466789 + 0 NA intron (ENSMUSG00000025557.10, intron 18 of 22) protein_coding-intron (ENSMUSG00000025557.10, intron 18 of 22) -10863 ENSMUSG00000115123.1 ENSMUSG00000115123 ENSMUST00000227451 Gm33299 lincRNA Interval_54668 chr14 73130600 73131055 + 0 NA intron (ENSMUSG00000022106.14, intron 1 of 6) protein_coding-intron (ENSMUSG00000022106.14, intron 1 of 6) -12036 ENSMUSG00000022106.14 ENSMUSG00000022106 ENSMUST00000170278 Rcbtb2 protein_coding Interval_169660 chr9 99868602 99870183 + 0 NA Intergenic Intergenic 6263 ENSMUSG00000053747.9 ENSMUSG00000053747 ENSMUST00000183065 Sox14 protein_coding Interval_9397 chr1 156779956 156782275 + 0 NA Intergenic Intergenic -12397 ENSMUSG00000046057.4 ENSMUSG00000046057 ENSMUST00000121352 Gm15428 processed_pseudogene Interval_89472 chr2 20868263 20868602 + 0 NA intron (ENSMUSG00000036591.16, intron 4 of 19) protein_coding-intron (ENSMUSG00000036591.16, intron 11 of 25) -8636 ENSMUSG00000036591.16 ENSMUSG00000036591 ENSMUST00000173654 Arhgap21 protein_coding Interval_89542 chr2 22227089 22227904 + 0 NA promoter-TSS (ENSMUSG00000025716.14) protein_coding-promoter-TSS (ENSMUSG00000025716.14) -13561 ENSMUSG00000025716.14 ENSMUSG00000025716 ENSMUST00000149423 Myo3a protein_coding Interval_14173 chr10 28299689 28300276 + 0 NA intron (ENSMUSG00000019889.10, intron 3 of 14) protein_coding-intron (ENSMUSG00000019889.10, intron 3 of 31) -85861 ENSMUSG00000076377.1 ENSMUSG00000076377 ENSMUST00000102422 Gm22370 miRNA Interval_94857 chr2 97779983 97780324 + 0 NA Intergenic Intergenic -153101 ENSMUSG00000105133.1 ENSMUSG00000105133 ENSMUST00000199276 Gm44320 miRNA Interval_120390 chr4 148286683 148288502 + 0 NA intron (ENSMUSG00000041544.11, intron 1 of 20) protein_coding-intron (ENSMUSG00000041544.11, intron 1 of 20) -19261 ENSMUSG00000087027.2 ENSMUSG00000087027 ENSMUST00000129579 Gm13206 lincRNA Interval_64223 chr16 9284259 9285148 + 0 NA Intergenic Intergenic 125933 ENSMUSG00000116123.1 ENSMUSG00000116123 ENSMUST00000229655 Gm49451 lincRNA Interval_171413 chr9 117896455 117896760 + 0 NA intron (ENSMUSG00000032443.17, intron 8 of 8) protein_coding-intron (ENSMUSG00000032443.17, intron 7 of 9) 23463 ENSMUSG00000097240.1 ENSMUSG00000097240 ENSMUST00000180386 Gm26614 lincRNA Interval_60057 chr15 64311009 64313663 + 0 NA promoter-TSS (ENSMUSG00000022377.16) protein_coding-promoter-TSS (ENSMUSG00000022377.16) -2161 ENSMUSG00000115752.1 ENSMUSG00000115752 ENSMUST00000226773 1700010G06Rik antisense Interval_63316 chr15 100276426 100276829 + 0 NA Intergenic Intergenic -4214 ENSMUSG00000045631.10 ENSMUSG00000045631 ENSMUST00000230901 Tmprss12 protein_coding Interval_78938 chr18 22228780 22229538 + 0 NA Intergenic Intergenic -57717 ENSMUSG00000024306.13 ENSMUSG00000024306 ENSMUST00000234661 Ccdc178 protein_coding Interval_87783 chr19 55839649 55839951 + 0 NA intron (ENSMUSG00000024985.20, intron 5 of 14) protein_coding-intron (ENSMUSG00000024985.20, intron 4 of 11) -1872 ENSMUSG00000099746.1 ENSMUSG00000099746 ENSMUST00000190974 Ppnr sense_intronic Interval_124121 chr5 38493751 38495307 + 0 NA intron (ENSMUSG00000005107.13, intron 2 of 13) protein_coding-intron (ENSMUSG00000005107.13, intron 1 of 10) -12934 ENSMUSG00000089646.1 ENSMUSG00000089646 ENSMUST00000162135 Gm15796 processed_pseudogene Interval_28024 chr11 72313528 72314739 + 0 NA promoter-TSS (ENSMUSG00000070388.3) protein_coding-promoter-TSS (ENSMUSG00000070388.3) -311 ENSMUSG00000070388.3 ENSMUSG00000070388 ENSMUST00000108504 Fbxo39 protein_coding Interval_6485 chr1 111754467 111754858 + 0 NA Intergenic Intergenic 53113 ENSMUSG00000100555.1 ENSMUSG00000100555 ENSMUST00000186797 Gm8173 processed_pseudogene Interval_167658 chr9 71623415 71625482 + 0 NA Intergenic Intergenic 6661 ENSMUSG00000032232.14 ENSMUSG00000032232 ENSMUST00000146567 Cgnl1 protein_coding Interval_97507 chr2 138184837 138185183 + 0 NA Intergenic Intergenic -71652 ENSMUSG00000062098.11 ENSMUSG00000062098 ENSMUST00000075410 Btbd3 protein_coding Interval_38146 chr12 75960286 75960693 + 0 NA intron (ENSMUSG00000063450.14, intron 45 of 114) protein_coding-intron (ENSMUSG00000063450.14, intron 45 of 115) 51386 ENSMUSG00000092922.1 ENSMUSG00000092922 ENSMUST00000175181 Mir5101 miRNA Interval_55025 chr14 77141547 77142326 + 0 NA Intergenic Intergenic 105072 ENSMUSG00000034795.14 ENSMUSG00000034795 ENSMUST00000137110 Ccdc122 protein_coding Interval_71128 chr17 19196492 19196765 + 0 NA Intergenic Intergenic 55160 ENSMUSG00000093533.3 ENSMUSG00000093533 ENSMUST00000177481 Vmn2r127 polymorphic_pseudogene Interval_59806 chr15 59415742 59416715 + 0 NA intron (ENSMUSG00000059586.10, intron 3 of 7) protein_coding-intron (ENSMUSG00000059586.10, intron 3 of 6) 41943 ENSMUSG00000059586.10 ENSMUSG00000059586 ENSMUST00000079703 Nsmce2 protein_coding Interval_42952 chr13 21881054 21883697 + 0 NA Intergenic Intergenic -6146 ENSMUSG00000080770.1 ENSMUSG00000080770 ENSMUST00000121002 Gm11278 processed_pseudogene Interval_80429 chr18 42134052 42134709 + 0 NA intron (ENSMUSG00000057719.11, intron 3 of 7) protein_coding-intron (ENSMUSG00000057719.11, intron 4 of 8) -8653 ENSMUSG00000057719.11 ENSMUSG00000057719 ENSMUST00000236947 Sh3rf2 protein_coding Interval_72696 chr17 31590501 31591466 + 0 NA promoter-TSS (ENSMUSG00000006705.13) protein_coding-promoter-TSS (ENSMUSG00000006705.13) 2506 ENSMUSG00000006705.13 ENSMUSG00000006705 ENSMUST00000176513 Pknox1 protein_coding Interval_149472 chr7 98872322 98873692 + 0 NA Intergenic Intergenic -17912 ENSMUSG00000091496.1 ENSMUSG00000091496 ENSMUST00000172081 Gm8398 processed_pseudogene Interval_130138 chr5 124477295 124478575 + 0 NA exon (ENSMUSG00000029401.8, exon 1 of 4) protein_coding-exon (ENSMUSG00000029401.8, exon 1 of 4) 375 ENSMUSG00000029401.8 ENSMUSG00000029401 ENSMUST00000198413 Rilpl2 protein_coding Interval_68316 chr16 73011210 73013187 + 0 NA intron (ENSMUSG00000022883.11, intron 23 of 28) protein_coding-intron (ENSMUSG00000022883.11, intron 23 of 28) 35849 ENSMUSG00000022883.11 ENSMUSG00000022883 ENSMUST00000232432 Robo1 protein_coding Interval_1472 chr1 23903005 23903945 + 0 NA intron (ENSMUSG00000026155.13, intron 1 of 9) protein_coding-intron (ENSMUSG00000026155.13, intron 1 of 9) 6261 ENSMUSG00000026155.13 ENSMUSG00000026155 ENSMUST00000133398 Smap1 protein_coding Interval_3793 chr1 63110460 63111125 + 0 NA intron (ENSMUSG00000040865.15, intron 1 of 11) protein_coding-intron (ENSMUSG00000040865.15, intron 1 of 10) -3948 ENSMUSG00000084799.7 ENSMUSG00000084799 ENSMUST00000188602 Ino80dos lincRNA Interval_99940 chr2 166021178 166022835 + 0 NA intron (ENSMUSG00000027678.17, intron 1 of 22) protein_coding-intron (ENSMUSG00000027678.17, intron 1 of 22) -25912 ENSMUSG00000027678.17 ENSMUSG00000027678 ENSMUST00000139394 Ncoa3 protein_coding Interval_112700 chr4 44180867 44181103 + 0 NA intron (ENSMUSG00000035696.15, intron 2 of 3) protein_coding-intron (ENSMUSG00000035696.15, intron 2 of 3) -12702 ENSMUSG00000035696.15 ENSMUSG00000035696 ENSMUST00000147302 Rnf38 protein_coding Interval_75096 chr17 63332098 63332323 + 0 NA intron (ENSMUSG00000023965.13, intron 3 of 5) protein_coding-intron (ENSMUSG00000023965.13, intron 6 of 8) 15200 ENSMUSG00000091426.1 ENSMUSG00000091426 ENSMUST00000165006 Gm17228 processed_pseudogene Interval_115785 chr4 104214978 104215349 + 0 NA intron (ENSMUSG00000028519.16, intron 3 of 9) protein_coding-intron (ENSMUSG00000028519.16, intron 3 of 9) 274204 ENSMUSG00000081696.2 ENSMUSG00000081696 ENSMUST00000118427 Gm12717 processed_pseudogene Interval_36997 chr12 56121264 56122779 + 0 NA Intergenic Intergenic -65266 ENSMUSG00000093300.1 ENSMUSG00000093300 ENSMUST00000175559 Gm23799 rRNA Interval_125385 chr5 66599772 66600171 + 0 NA intron (ENSMUSG00000029207.16, intron 1 of 5) protein_coding-intron (ENSMUSG00000029207.16, intron 1 of 17) -4401 ENSMUSG00000106706.1 ENSMUSG00000106706 ENSMUST00000201865 C530043K16Rik TEC Interval_80854 chr18 49490387 49491784 + 0 NA Intergenic Intergenic -32204 ENSMUSG00000100297.1 ENSMUSG00000100297 ENSMUST00000190201 1700044K03Rik lincRNA Interval_145919 chr7 41739597 41740447 + 0 NA Intergenic Intergenic 17734 ENSMUSG00000092538.1 ENSMUSG00000092538 ENSMUST00000173834 Vmn2r-ps55 unprocessed_pseudogene Interval_40949 chr12 110170693 110170969 + 0 NA Intergenic Intergenic -12754 ENSMUSG00000113331.1 ENSMUSG00000113331 ENSMUST00000223217 3110009F21Rik lincRNA Interval_170227 chr9 106306259 106307333 + 0 NA intron (ENSMUSG00000023345.17, intron 8 of 10) protein_coding-intron (ENSMUSG00000023345.17, intron 8 of 10) 25186 ENSMUSG00000023345.17 ENSMUSG00000023345 ENSMUST00000186366 Poc1a protein_coding Interval_108294 chr3 123378750 123380202 + 0 NA intron (ENSMUSG00000028114.16, intron 5 of 9) protein_coding-intron (ENSMUSG00000028114.16, intron 5 of 10) 6622 ENSMUSG00000028114.16 ENSMUSG00000028114 ENSMUST00000197628 Mettl14 protein_coding Interval_119999 chr4 141303994 141304438 + 0 NA intron (ENSMUSG00000006445.3, intron 1 of 2) protein_coding-intron (ENSMUSG00000006445.3, intron 1 of 16) -12697 ENSMUSG00000006445.3 ENSMUSG00000006445 ENSMUST00000149002 Epha2 protein_coding Interval_35561 chr12 24805554 24805903 + 0 NA intron (ENSMUSG00000113621.1, intron 1 of 2) bidirectional_promoter_lncRNA-intron (ENSMUSG00000113621.1, intron 1 of 2) 25474 ENSMUSG00000113621.1 ENSMUSG00000113621 ENSMUST00000221412 2900060N12Rik bidirectional_promoter_lncRNA Interval_35882 chr12 31568702 31569188 + 0 NA Intergenic Intergenic 6079 ENSMUSG00000112718.1 ENSMUSG00000112718 ENSMUST00000220174 Gm48524 processed_pseudogene Interval_104293 chr3 62943316 62944558 + 0 NA Intergenic Intergenic -19704 ENSMUSG00000063001.10 ENSMUSG00000063001 ENSMUST00000077976 Gm9701 processed_pseudogene Interval_137729 chr6 81817005 81817748 + 0 NA Intergenic Intergenic 10585 ENSMUSG00000089445.1 ENSMUSG00000089445 ENSMUST00000158820 Gm22530 snoRNA Interval_4346 chr1 72848702 72849770 + 0 NA exon (ENSMUSG00000039323.18, exon 2 of 4) protein_coding-exon (ENSMUSG00000039323.18, exon 2 of 4) 537 ENSMUSG00000039323.18 ENSMUSG00000039323 ENSMUST00000155703 Igfbp2 protein_coding Interval_156891 chr8 61505407 61505638 + 0 NA exon (ENSMUSG00000031641.14, exon 5 of 5) protein_coding-exon (ENSMUSG00000031641.14, exon 5 of 5) 10378 ENSMUSG00000058056.16 ENSMUSG00000058056 ENSMUST00000123523 Palld protein_coding Interval_49864 chr13 117311577 117312282 + 0 NA Intergenic Intergenic 46691 ENSMUSG00000114540.1 ENSMUSG00000114540 ENSMUST00000225588 Gm6421 processed_pseudogene Interval_113726 chr4 57867235 57868629 + 0 NA intron (ENSMUSG00000038729.24, intron 2 of 2) protein_coding-intron (ENSMUSG00000038729.24, intron 1 of 3) 9563 ENSMUSG00000096195.1 ENSMUSG00000096195 ENSMUST00000179236 Gm26138 snRNA Interval_25984 chr11 53322565 53322783 + 0 NA Intergenic Intergenic -4726 ENSMUSG00000018239.9 ENSMUSG00000018239 ENSMUST00000141585 Zcchc10 protein_coding Interval_56485 chr14 119087786 119088349 + 0 NA intron (ENSMUSG00000042104.18, intron 5 of 38) protein_coding-intron (ENSMUSG00000042104.18, intron 5 of 11) -10898 ENSMUSG00000087479.1 ENSMUSG00000087479 ENSMUST00000140488 Gm16835 processed_transcript Interval_22873 chr11 16961332 16962173 + 0 NA Intergenic Intergenic 10377 ENSMUSG00000044966.4 ENSMUSG00000044966 ENSMUST00000061327 Fbxo48 protein_coding Interval_59490 chr15 54278066 54279439 + 0 NA promoter-TSS (ENSMUSG00000063727.3) protein_coding-promoter-TSS (ENSMUSG00000063727.3) -268 ENSMUSG00000063727.3 ENSMUSG00000063727 ENSMUST00000079772 Tnfrsf11b protein_coding Interval_3894 chr1 64532058 64533617 + 0 NA promoter-TSS (ENSMUSG00000025958.14) protein_coding-promoter-TSS (ENSMUSG00000025958.14) -43551 ENSMUSG00000025958.14 ENSMUSG00000025958 ENSMUST00000190979 Creb1 protein_coding Interval_54474 chr14 70099733 70100533 + 0 NA promoter-TSS (ENSMUSG00000022089.9) protein_coding-promoter-TSS (ENSMUSG00000022089.9) -5 ENSMUSG00000022089.9 ENSMUSG00000022089 ENSMUST00000228049 Bin3 protein_coding Interval_22012 chr11 5774717 5774928 + 0 NA intron (ENSMUSG00000083844.8, intron 4 of 6) transcribed_unprocessed_pseudogene-intron (ENSMUSG00000083844.8, intron 4 of 6) -12446 ENSMUSG00000049680.17 ENSMUSG00000049680 ENSMUST00000140922 Urgcp protein_coding Interval_72417 chr17 29694040 29695593 + 0 NA exon (ENSMUSG00000024019.18, exon 15 of 24) protein_coding-exon (ENSMUSG00000024019.18, exon 15 of 24) 22192 ENSMUSG00000024018.18 ENSMUSG00000024018 ENSMUST00000174437 Ccdc167 protein_coding Interval_139918 chr6 112727386 112727951 + 0 NA intron (ENSMUSG00000030257.16, intron 20 of 21) protein_coding-intron (ENSMUSG00000030257.16, intron 20 of 21) -31035 ENSMUSG00000030254.16 ENSMUSG00000030254 ENSMUST00000135092 Rad18 protein_coding Interval_11764 chr1 185280013 185280226 + 0 NA intron (ENSMUSG00000039318.12, intron 1 of 1) protein_coding-intron (ENSMUSG00000039318.12, intron 31 of 34) 2321 ENSMUSG00000039318.12 ENSMUSG00000039318 ENSMUST00000195534 Rab3gap2 protein_coding Interval_145344 chr7 34132114 34133770 + 0 NA promoter-TSS (ENSMUSG00000036459.15) protein_coding-promoter-TSS (ENSMUSG00000036459.15) -4905 ENSMUSG00000036459.15 ENSMUSG00000036459 ENSMUST00000140911 Wtip protein_coding Interval_52901 chr14 51938769 51939661 + 0 NA Intergenic Intergenic -9555 ENSMUSG00000115698.1 ENSMUSG00000115698 ENSMUST00000227552 Gm49076 lincRNA Interval_169554 chr9 99098692 99098930 + 0 NA intron (ENSMUSG00000032462.14, intron 4 of 23) protein_coding-intron (ENSMUSG00000032462.14, intron 4 of 23) 41114 ENSMUSG00000032462.14 ENSMUSG00000032462 ENSMUST00000124723 Pik3cb protein_coding Interval_3998 chr1 65864650 65864989 + 0 NA Intergenic Intergenic -61719 ENSMUSG00000025945.11 ENSMUSG00000025945 ENSMUST00000114027 Crygf protein_coding Interval_72141 chr17 28252034 28252537 + 0 NA intron (ENSMUSG00000002250.16, intron 2 of 6) protein_coding-intron (ENSMUSG00000002250.16, intron 2 of 7) 19511 ENSMUSG00000002250.16 ENSMUSG00000002250 ENSMUST00000233383 Ppard protein_coding Interval_168938 chr9 89224550 89225201 + 0 NA intron (ENSMUSG00000066442.17, intron 1 of 1) protein_coding-intron (ENSMUSG00000066442.17, intron 2 of 2) 25496 ENSMUSG00000100838.1 ENSMUSG00000100838 ENSMUST00000138109 Gm29094 protein_coding Interval_64688 chr16 14193824 14195823 + 0 NA TTS (ENSMUSG00000018830.10) protein_coding-TTS (ENSMUSG00000018830.10) 19696 ENSMUSG00000022678.16 ENSMUSG00000022678 ENSMUST00000149232 Nde1 protein_coding Interval_121476 chr4 156044359 156045799 + 0 NA promoter-TSS (ENSMUSG00000029074.14) protein_coding-promoter-TSS (ENSMUSG00000029074.14) -1116 ENSMUSG00000029074.14 ENSMUSG00000029074 ENSMUST00000030951 Ttll10 protein_coding Interval_111457 chr4 21775687 21776978 + 0 NA promoter-TSS (ENSMUSG00000040455.17) protein_coding-promoter-TSS (ENSMUSG00000040455.17) -9120 ENSMUSG00000028251.5 ENSMUSG00000028251 ENSMUST00000029915 Tstd3 protein_coding Interval_51979 chr14 34401100 34401828 + 0 NA intron (ENSMUSG00000041445.9, intron 6 of 6) protein_coding-intron (ENSMUSG00000041445.9, intron 6 of 6) 25743 ENSMUSG00000041445.9 ENSMUSG00000041445 ENSMUST00000227130 Mmrn2 protein_coding Interval_94900 chr2 101472657 101473579 + 0 NA Intergenic Intergenic -97506 ENSMUSG00000093614.1 ENSMUSG00000093614 ENSMUST00000177431 Gm20693 processed_pseudogene Interval_156830 chr8 60912157 60913414 + 0 NA exon (ENSMUSG00000004319.15, exon 14 of 14) protein_coding-exon (ENSMUSG00000004319.15, exon 14 of 14) 6754 ENSMUSG00000038005.15 ENSMUSG00000038005 ENSMUST00000211016 Hpf1 protein_coding Interval_34442 chr12 4194323 4195249 + 0 NA promoter-TSS (ENSMUSG00000020654.15) protein_coding-promoter-TSS (ENSMUSG00000020654.15) 21720 ENSMUSG00000020652.17 ENSMUSG00000020652 ENSMUST00000126017 Cenpo protein_coding Interval_10126 chr1 165951341 165951716 + 0 NA intron (ENSMUSG00000026565.18, intron 1 of 16) protein_coding-intron (ENSMUSG00000026565.18, intron 1 of 14) 9910 ENSMUSG00000099008.1 ENSMUSG00000099008 ENSMUST00000184037 Gm17976 processed_pseudogene Interval_165274 chr9 45961811 45962001 + 0 NA TTS (ENSMUSG00000003131.7) protein_coding-TTS (ENSMUSG00000003131.7) 7805 ENSMUSG00000111329.1 ENSMUSG00000111329 ENSMUST00000216147 A830035O19Rik antisense Interval_96844 chr2 128856290 128856499 + 0 NA Intergenic Intergenic -6587 ENSMUSG00000027386.9 ENSMUSG00000027386 ENSMUST00000028864 Fbln7 protein_coding Interval_57074 chr15 5622945 5623757 + 0 NA Intergenic Intergenic -90683 ENSMUSG00000115185.1 ENSMUSG00000115185 ENSMUST00000226984 Gm18715 processed_pseudogene Interval_21129 chr10 126770677 126770911 + 0 NA Intergenic Intergenic 22916 ENSMUSG00000112832.1 ENSMUSG00000112832 ENSMUST00000218870 4930484H19Rik lincRNA Interval_35103 chr12 17336078 17336357 + 0 NA Intergenic Intergenic -11504 ENSMUSG00000020566.19 ENSMUSG00000020566 ENSMUST00000143131 Atp6v1c2 protein_coding Interval_87971 chr19 57461454 57462995 + 0 NA intron (ENSMUSG00000025086.13, intron 2 of 5) protein_coding-intron (ENSMUSG00000025086.13, intron 2 of 6) 9267 ENSMUSG00000025086.13 ENSMUSG00000025086 ENSMUST00000238107 Trub1 protein_coding Interval_2255 chr1 37412617 37413436 + 0 NA Intergenic Intergenic 16974 ENSMUSG00000026112.7 ENSMUSG00000026112 ENSMUST00000192179 Coa5 protein_coding Interval_20684 chr10 120226630 120227945 + 0 NA exon (ENSMUSG00000020224.15, exon 1 of 3) protein_coding-exon (ENSMUSG00000020224.15, exon 1 of 3) 185 ENSMUSG00000020224.15 ENSMUSG00000020224 ENSMUST00000130198 Llph protein_coding Interval_63940 chr16 4667074 4668241 + 0 NA intron (ENSMUSG00000039637.15, intron 6 of 24) protein_coding-intron (ENSMUSG00000039637.15, intron 6 of 27) -16458 ENSMUSG00000004069.17 ENSMUSG00000004069 ENSMUST00000229529 Dnaja3 protein_coding Interval_125612 chr5 72665136 72665738 + 0 NA intron (ENSMUSG00000067219.9, intron 3 of 4) protein_coding-intron (ENSMUSG00000067219.9, intron 4 of 5) 17624 ENSMUSG00000067219.9 ENSMUSG00000067219 ENSMUST00000197772 Nipal1 protein_coding Interval_31472 chr11 100880259 100881443 + 0 NA TTS (ENSMUSG00000004043.14) protein_coding-TTS (ENSMUSG00000004043.14) 18456 ENSMUSG00000004040.16 ENSMUSG00000004040 ENSMUST00000130686 Stat3 protein_coding Interval_18010 chr10 81346539 81347084 + 0 NA promoter-TSS (ENSMUSG00000020232.17) protein_coding-promoter-TSS (ENSMUSG00000020232.17) 3516 ENSMUSG00000020232.17 ENSMUSG00000020232 ENSMUST00000140160 Hmg20b protein_coding Interval_125969 chr5 76340431 76340877 + 0 NA intron (ENSMUSG00000087037.1, intron 5 of 5) protein_coding-intron (ENSMUSG00000029236.4, intron 7 of 9) 9416 ENSMUSG00000087037.1 ENSMUSG00000087037 ENSMUST00000132154 4930432L08Rik processed_transcript Interval_78140 chr18 9269145 9269619 + 0 NA Intergenic Intergenic 13427 ENSMUSG00000036855.3 ENSMUSG00000036855 ENSMUST00000041007 Gjd4 protein_coding Interval_19813 chr10 109513461 109513861 + 0 NA Intergenic Intergenic -127174 ENSMUSG00000112253.1 ENSMUSG00000112253 ENSMUST00000219849 Gm47329 processed_pseudogene Interval_95726 chr2 115310286 115310523 + 0 NA Intergenic Intergenic 33876 ENSMUSG00000087309.1 ENSMUSG00000087309 ENSMUST00000152815 4930528P14Rik lincRNA Interval_93933 chr2 79537834 79539425 + 0 NA Intergenic Intergenic -81878 ENSMUSG00000034701.9 ENSMUSG00000034701 ENSMUST00000041099 Neurod1 protein_coding Interval_15640 chr10 52739253 52739596 + 0 NA intron (ENSMUSG00000038602.7, intron 1 of 7) protein_coding-intron (ENSMUSG00000038602.7, intron 1 of 7) 45586 ENSMUSG00000111918.1 ENSMUSG00000111918 ENSMUST00000220050 Gm47624 TEC Interval_144192 chr7 19887858 19888698 + 0 NA promoter-TSS (ENSMUSG00000049848.7) protein_coding-promoter-TSS (ENSMUSG00000049848.7) -313 ENSMUSG00000049848.7 ENSMUSG00000049848 ENSMUST00000052605 Ceacam19 protein_coding Interval_33080 chr11 114246267 114247206 + 0 NA Intergenic Intergenic -5107 ENSMUSG00000075431.6 ENSMUSG00000075431 ENSMUST00000130963 Gm11691 lincRNA Interval_86254 chr19 38118834 38120483 + 0 NA intron (ENSMUSG00000024990.13, intron 4 of 5) protein_coding-intron (ENSMUSG00000024990.13, intron 4 of 5) 5623 ENSMUSG00000024990.13 ENSMUSG00000024990 ENSMUST00000237287 Rbp4 protein_coding Interval_131901 chr5 140690289 140691188 + 0 NA promoter-TSS (ENSMUSG00000036555.14) protein_coding-promoter-TSS (ENSMUSG00000036555.14) 11538 ENSMUSG00000036555.14 ENSMUSG00000036555 ENSMUST00000139382 Iqce protein_coding Interval_60719 chr15 76343044 76344701 + 0 NA promoter-TSS (ENSMUSG00000022551.8) protein_coding-promoter-TSS (ENSMUSG00000022551.8) 305 ENSMUSG00000022551.8 ENSMUSG00000022551 ENSMUST00000229292 Cyc1 protein_coding Interval_60190 chr15 67170109 67170703 + 0 NA intron (ENSMUSG00000013846.10, intron 1 of 7) protein_coding-intron (ENSMUSG00000013846.10, intron 1 of 8) -41383 ENSMUSG00000013846.10 ENSMUSG00000013846 ENSMUST00000230150 St3gal1 protein_coding Interval_118225 chr4 129621225 129621409 + 0 NA promoter-TSS (ENSMUSG00000028795.15) protein_coding-promoter-TSS (ENSMUSG00000028795.15) -2237 ENSMUSG00000040795.12 ENSMUSG00000040795 ENSMUST00000146378 Iqcc protein_coding Interval_54689 chr14 73335023 73336296 + 0 NA TTS (ENSMUSG00000115573.1) processed_pseudogene-TTS (ENSMUSG00000115573.1) 567 ENSMUSG00000115573.1 ENSMUSG00000115573 ENSMUST00000226676 Gm49131 processed_pseudogene Interval_28095 chr11 72771863 72773241 + 0 NA TTS (ENSMUSG00000020790.14) protein_coding-TTS (ENSMUSG00000020790.14) 23289 ENSMUSG00000057778.14 ENSMUSG00000057778 ENSMUST00000169476 Cyb5d2 protein_coding Interval_91824 chr2 49900019 49901128 + 0 NA intron (ENSMUSG00000026765.12, intron 4 of 4) protein_coding-intron (ENSMUSG00000026765.12, intron 3 of 9) 6307 ENSMUSG00000088825.1 ENSMUSG00000088825 ENSMUST00000158200 Gm25223 misc_RNA Interval_65848 chr16 29765782 29766342 + 0 NA Intergenic Intergenic -11750 ENSMUSG00000116814.1 ENSMUSG00000116814 ENSMUST00000232037 Gm49636 lincRNA Interval_115248 chr4 94852989 94853155 + 0 NA intron (ENSMUSG00000006386.15, intron 14 of 22) protein_coding-intron (ENSMUSG00000006386.15, intron 14 of 22) 48229 ENSMUSG00000006386.15 ENSMUSG00000006386 ENSMUST00000131958 Tek protein_coding Interval_152887 chr7 139493093 139493380 + 0 NA intron (ENSMUSG00000025477.14, intron 3 of 3) protein_coding-intron (ENSMUSG00000025477.14, intron 4 of 15) -23423 ENSMUSG00000025477.14 ENSMUSG00000025477 ENSMUST00000152475 Inpp5a protein_coding Interval_132744 chr5 147545615 147546216 + 0 NA TTS (ENSMUSG00000029647.15) protein_coding-TTS (ENSMUSG00000029647.15) 100892 ENSMUSG00000029648.13 ENSMUSG00000029648 ENSMUST00000031652 Flt1 protein_coding Interval_149903 chr7 102464262 102464470 + 0 NA intron (ENSMUSG00000030978.10, intron 1 of 1) protein_coding-intron (ENSMUSG00000030978.10, intron 16 of 18) 6121 ENSMUSG00000109940.1 ENSMUSG00000109940 ENSMUST00000209955 Gm45399 TEC Interval_133044 chr5 149490483 149490740 + 0 NA intron (ENSMUSG00000107132.1, intron 4 of 4) antisense-intron (ENSMUSG00000107132.1, intron 4 of 4) 12441 ENSMUSG00000106879.1 ENSMUSG00000106879 ENSMUST00000201267 Gm2566 processed_pseudogene Interval_50130 chr14 8167449 8168009 + 0 NA promoter-TSS (ENSMUSG00000021748.9) protein_coding-promoter-TSS (ENSMUSG00000021748.9) -633 ENSMUSG00000021748.9 ENSMUSG00000021748 ENSMUST00000224690 Pdhb protein_coding Interval_60212 chr15 68204871 68205389 + 0 NA intron (ENSMUSG00000022335.17, intron 3 of 15) protein_coding-intron (ENSMUSG00000022335.17, intron 3 of 4) 53657 ENSMUSG00000022335.17 ENSMUSG00000022335 ENSMUST00000161139 Zfat protein_coding Interval_101072 chr2 174917305 174918162 + 0 NA Intergenic Intergenic 61444 ENSMUSG00000086177.1 ENSMUSG00000086177 ENSMUST00000131690 Gm14616 lincRNA Interval_41316 chr12 112671703 112672155 + 0 NA promoter-TSS (ENSMUSG00000001729.14) protein_coding-promoter-TSS (ENSMUSG00000001729.14) -6899 ENSMUSG00000037638.5 ENSMUSG00000037638 ENSMUST00000173942 Zbtb42 protein_coding Interval_4169 chr1 71096900 71097457 + 0 NA intron (ENSMUSG00000026196.7, intron 1 of 10) protein_coding-intron (ENSMUSG00000026196.7, intron 1 of 10) 5968 ENSMUSG00000026196.7 ENSMUSG00000026196 ENSMUST00000027393 Bard1 protein_coding Interval_3446 chr1 58407594 58410589 + 0 NA Intergenic Intergenic 11307 ENSMUSG00000026034.17 ENSMUSG00000026034 ENSMUST00000147258 Clk1 protein_coding Interval_67661 chr16 55787145 55787671 + 0 NA Intergenic Intergenic -8264 ENSMUSG00000088450.1 ENSMUSG00000088450 ENSMUST00000157825 Gm26369 snRNA Interval_142554 chr6 143221093 143221756 + 0 NA promoter-TSS (ENSMUSG00000107802.1) antisense-promoter-TSS (ENSMUSG00000107802.1) 24 ENSMUSG00000107802.1 ENSMUSG00000107802 ENSMUST00000204351 1700126G02Rik antisense Interval_174360 chrX 149934743 149935207 + 0 NA Intergenic Intergenic -6680 ENSMUSG00000095082.1 ENSMUSG00000095082 ENSMUST00000112740 Gm15091 protein_coding Interval_84931 chr19 19074705 19074937 + 0 NA intron (ENSMUSG00000036192.15, intron 1 of 9) protein_coding-intron (ENSMUSG00000036192.15, intron 1 of 9) -73721 ENSMUSG00000036192.15 ENSMUSG00000036192 ENSMUST00000147907 Rorb protein_coding Interval_11878 chr1 186684258 186684476 + 0 NA intron (ENSMUSG00000039239.14, intron 1 of 6) protein_coding-intron (ENSMUSG00000039239.14, intron 1 of 6) 7625 ENSMUSG00000089045.1 ENSMUSG00000089045 ENSMUST00000158420 Gm26169 snoRNA Interval_44442 chr13 44861988 44862677 + 0 NA intron (ENSMUSG00000038518.15, intron 3 of 5) protein_coding-intron (ENSMUSG00000038518.15, intron 4 of 18) -24049 ENSMUSG00000088189.1 ENSMUSG00000088189 ENSMUST00000157564 Gm22213 snoRNA Interval_125949 chr5 76151711 76152207 + 0 NA promoter-TSS (ENSMUSG00000029233.15) protein_coding-promoter-TSS (ENSMUSG00000029233.15) 11259 ENSMUSG00000029233.15 ENSMUSG00000029233 ENSMUST00000124217 Srd5a3 protein_coding Interval_131347 chr5 136627840 136628354 + 0 NA Intergenic Intergenic -60607 ENSMUSG00000029705.17 ENSMUSG00000029705 ENSMUST00000177305 Cux1 protein_coding Interval_34916 chr12 13364267 13364552 + 0 NA intron (ENSMUSG00000020576.10, intron 25 of 51) protein_coding-intron (ENSMUSG00000020576.10, intron 25 of 51) 61308 ENSMUSG00000113476.1 ENSMUSG00000113476 ENSMUST00000220829 Gm48309 TEC Interval_129536 chr5 120761226 120762328 + 0 NA exon (ENSMUSG00000032661.9, exon 9 of 16) protein_coding-exon (ENSMUSG00000032661.9, exon 9 of 16) -4122 ENSMUSG00000032661.9 ENSMUSG00000032661 ENSMUST00000166703 Oas3 protein_coding Interval_79383 chr18 31490962 31491494 + 0 NA Intergenic Intergenic -24861 ENSMUSG00000077169.1 ENSMUSG00000077169 ENSMUST00000103981 Gm25396 snoRNA Interval_141935 chr6 135550259 135550693 + 0 NA Intergenic Intergenic -33716 ENSMUSG00000065187.1 ENSMUSG00000065187 ENSMUST00000083253 Gm25136 snoRNA Interval_2144 chr1 36707655 36708345 + 0 NA promoter-TSS (ENSMUSG00000037351.9) protein_coding-promoter-TSS (ENSMUSG00000037351.9) 1947 ENSMUSG00000037351.9 ENSMUSG00000037351 ENSMUST00000162662 Actr1b protein_coding Interval_95287 chr2 105680271 105681411 + 0 NA promoter-TSS (ENSMUSG00000027168.21) protein_coding-promoter-TSS (ENSMUSG00000027168.21) 5732 ENSMUSG00000027168.21 ENSMUSG00000027168 ENSMUST00000147946 Pax6 protein_coding Interval_25921 chr11 52603440 52604323 + 0 NA Intergenic Intergenic -116571 ENSMUSG00000083129.1 ENSMUSG00000083129 ENSMUST00000118245 Gm12210 processed_pseudogene Interval_27622 chr11 69092499 69092804 + 0 NA TTS (ENSMUSG00000020894.16) protein_coding-TTS (ENSMUSG00000020894.16) 4129 ENSMUSG00000020894.16 ENSMUSG00000020894 ENSMUST00000146847 Vamp2 protein_coding Interval_71502 chr17 24195285 24195472 + 0 NA intron (ENSMUSG00000036473.16, intron 1 of 7) protein_coding-intron (ENSMUSG00000036473.16, intron 1 of 7) 10118 ENSMUSG00000036473.16 ENSMUSG00000036473 ENSMUST00000201716 Tbc1d24 protein_coding Interval_172387 chrX 17093866 17094103 + 0 NA Intergenic Intergenic -158078 ENSMUSG00000081858.1 ENSMUSG00000081858 ENSMUST00000121680 Gm14514 processed_pseudogene Interval_86657 chr19 42338407 42338797 + 0 NA intron (ENSMUSG00000042401.8, intron 2 of 14) protein_coding-intron (ENSMUSG00000042401.8, intron 2 of 14) 40499 ENSMUSG00000117706.1 ENSMUSG00000117706 ENSMUST00000237236 Gm50184 processed_pseudogene Interval_90615 chr2 31491348 31492943 + 0 NA intron (ENSMUSG00000076441.9, intron 7 of 15) protein_coding-intron (ENSMUSG00000076441.9, intron 7 of 15) -8581 ENSMUSG00000076441.9 ENSMUSG00000076441 ENSMUST00000130195 Ass1 protein_coding Interval_79922 chr18 35942311 35942616 + 0 NA Intergenic Intergenic -10361 ENSMUSG00000080529.1 ENSMUSG00000080529 ENSMUST00000116879 Gm23882 miRNA Interval_159148 chr8 91079448 91080095 + 0 NA exon (ENSMUSG00000031666.15, exon 4 of 4) protein_coding-exon (ENSMUSG00000031666.15, exon 4 of 4) 9649 ENSMUSG00000031666.15 ENSMUSG00000031666 ENSMUST00000126689 Rbl2 protein_coding Interval_146188 chr7 44593887 44594155 + 0 NA promoter-TSS (ENSMUSG00000062785.14) protein_coding-promoter-TSS (ENSMUSG00000062785.14) 1858 ENSMUSG00000108832.1 ENSMUSG00000108832 ENSMUST00000208849 Gm44832 antisense Interval_154343 chr8 14871992 14872808 + 0 NA Intergenic Intergenic -16604 ENSMUSG00000026317.7 ENSMUSG00000026317 ENSMUST00000128839 Cln8 protein_coding Interval_142392 chr6 141469659 141470008 + 0 NA intron (ENSMUSG00000041741.10, intron 5 of 5) protein_coding-intron (ENSMUSG00000041741.10, intron 5 of 15) 27473 ENSMUSG00000108169.1 ENSMUSG00000108169 ENSMUST00000204360 Gm43958 TEC Interval_94926 chr2 101831290 101831771 + 0 NA TTS (ENSMUSG00000032841.15) protein_coding-TTS (ENSMUSG00000032841.15) -33823 ENSMUSG00000032841.15 ENSMUSG00000032841 ENSMUST00000127358 Prr5l protein_coding Interval_89496 chr2 21105364 21105666 + 0 NA intron (ENSMUSG00000087219.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000087219.1, intron 1 of 1) 8416 ENSMUSG00000087219.1 ENSMUSG00000087219 ENSMUST00000128743 Gm13376 lincRNA Interval_115507 chr4 99578801 99579055 + 0 NA Intergenic Intergenic 9428 ENSMUSG00000087332.1 ENSMUSG00000087332 ENSMUST00000132108 Gm12690 lincRNA Interval_148131 chr7 79408834 79409289 + 0 NA intron (ENSMUSG00000039187.16, intron 7 of 21) protein_coding-intron (ENSMUSG00000039187.16, intron 9 of 37) 3456 ENSMUSG00000082400.1 ENSMUSG00000082400 ENSMUST00000119834 Gm16017 processed_pseudogene Interval_131608 chr5 138753721 138756434 + 0 NA promoter-TSS (ENSMUSG00000025854.15) protein_coding-promoter-TSS (ENSMUSG00000025854.15) -10 ENSMUSG00000025854.15 ENSMUSG00000025854 ENSMUST00000161641 Fam20c protein_coding Interval_72563 chr17 30688178 30688725 + 0 NA intron (ENSMUSG00000033826.10, intron 19 of 90) protein_coding-intron (ENSMUSG00000033826.10, intron 21 of 92) 17811 ENSMUSG00000033826.10 ENSMUSG00000033826 ENSMUST00000235567 Dnah8 protein_coding Interval_121489 chr4 156157639 156157964 + 0 NA Intergenic Intergenic 27288 ENSMUSG00000110404.1 ENSMUSG00000110404 ENSMUST00000209248 Rnf223 protein_coding Interval_118106 chr4 128988985 128989533 + 0 NA Intergenic Intergenic -4094 ENSMUSG00000028792.14 ENSMUSG00000028792 ENSMUST00000152762 Ak2 protein_coding Interval_64946 chr16 17446232 17446759 + 0 NA Intergenic Intergenic -5981 ENSMUSG00000006134.4 ENSMUSG00000006134 ENSMUST00000231629 Crkl protein_coding Interval_6013 chr1 93909981 93910928 + 0 NA intron (ENSMUSG00000101660.1, intron 3 of 5) unprocessed_pseudogene-intron (ENSMUSG00000101660.1, intron 3 of 5) 4210 ENSMUSG00000101660.1 ENSMUSG00000101660 ENSMUST00000190039 Gm18666 unprocessed_pseudogene Interval_2354 chr1 38357230 38357444 + 0 NA intron (ENSMUSG00000037138.18, intron 6 of 22) protein_coding-intron (ENSMUSG00000037138.18, intron 6 of 7) -27612 ENSMUSG00000087131.7 ENSMUSG00000087131 ENSMUST00000131663 Gm16152 antisense Interval_8200 chr1 136456760 136459144 + 0 NA Intergenic Intergenic -9983 ENSMUSG00000041498.13 ENSMUSG00000041498 ENSMUST00000195274 Kif14 protein_coding Interval_83368 chr18 84633834 84635134 + 0 NA intron (ENSMUSG00000056162.14, intron 6 of 7) protein_coding-intron (ENSMUSG00000056162.14, intron 5 of 11) 8739 ENSMUSG00000117676.1 ENSMUSG00000117676 ENSMUST00000236074 Gm50314 antisense Interval_49359 chr13 111455027 111455290 + 0 NA intron (ENSMUSG00000116016.1, intron 2 of 7) protein_coding-intron (ENSMUSG00000032745.18, intron 3 of 12) -1735 ENSMUSG00000032745.18 ENSMUSG00000032745 ENSMUST00000129638 Gpbp1 protein_coding Interval_147133 chr7 63704268 63705232 + 0 NA intron (ENSMUSG00000033510.14, intron 3 of 10) protein_coding-intron (ENSMUSG00000033510.14, intron 6 of 13) 53935 ENSMUSG00000033510.14 ENSMUSG00000033510 ENSMUST00000177511 Otud7a protein_coding Interval_117956 chr4 127323730 127325361 + 0 NA TTS (ENSMUSG00000042367.12) protein_coding-TTS (ENSMUSG00000042367.12) 4616 ENSMUSG00000042367.12 ENSMUSG00000042367 ENSMUST00000046532 Gjb3 protein_coding Interval_106119 chr3 93393000 93393790 + 0 NA promoter-TSS (ENSMUSG00000041984.2) protein_coding-promoter-TSS (ENSMUSG00000041984.2) -303 ENSMUSG00000103765.1 ENSMUSG00000103765 ENSMUST00000191784 Gm37857 TEC Interval_105322 chr3 84892739 84892974 + 0 NA intron (ENSMUSG00000028086.15, intron 2 of 12) protein_coding-intron (ENSMUSG00000028086.15, intron 2 of 12) 18965 ENSMUSG00000102919.1 ENSMUSG00000102919 ENSMUST00000193246 Gm37726 TEC Interval_109900 chr3 150385244 150385422 + 0 NA Intergenic Intergenic 130748 ENSMUSG00000105779.1 ENSMUSG00000105779 ENSMUST00000199849 Gm6439 processed_pseudogene Interval_164734 chr9 40873820 40874276 + 0 NA promoter-TSS (ENSMUSG00000054360.4) protein_coding-promoter-TSS (ENSMUSG00000054360.4) -79 ENSMUSG00000054360.4 ENSMUSG00000054360 ENSMUST00000067375 Bsx protein_coding Interval_171663 chr9 120013421 120013639 + 0 NA TTS (ENSMUSG00000079243.4) protein_coding-TTS (ENSMUSG00000079243.4) 3725 ENSMUSG00000111089.1 ENSMUSG00000111089 ENSMUST00000215481 Gm49427 lincRNA Interval_143230 chr7 4641088 4641368 + 0 NA TTS (ENSMUSG00000052296.7) protein_coding-TTS (ENSMUSG00000052296.7) 2056 ENSMUSG00000052296.7 ENSMUSG00000052296 ENSMUST00000205374 Ppp6r1 protein_coding Interval_58149 chr15 29772064 29772265 + 0 NA Intergenic Intergenic -58760 ENSMUSG00000092639.1 ENSMUSG00000092639 ENSMUST00000174898 Mir3964 miRNA Interval_27583 chr11 68865257 68865496 + 0 NA promoter-TSS (ENSMUSG00000018736.14) protein_coding-promoter-TSS (ENSMUSG00000018736.14) -5380 ENSMUSG00000018736.14 ENSMUSG00000018736 ENSMUST00000127469 Ndel1 protein_coding Interval_48799 chr13 103374388 103376054 + 0 NA Intergenic Intergenic 18969 ENSMUSG00000047643.5 ENSMUSG00000047643 ENSMUST00000052030 Gm5454 processed_pseudogene Interval_104172 chr3 59542405 59542705 + 0 NA Intergenic Intergenic -7329 ENSMUSG00000103598.1 ENSMUSG00000103598 ENSMUST00000192696 Gm4856 unprocessed_pseudogene Interval_17023 chr10 70519693 70521578 + 0 NA intron (ENSMUSG00000043259.15, intron 6 of 10) protein_coding-intron (ENSMUSG00000043259.15, intron 5 of 13) -15387 ENSMUSG00000112273.1 ENSMUSG00000112273 ENSMUST00000219398 Gm29783 processed_pseudogene Interval_22126 chr11 6497300 6499021 + 0 NA Intergenic Intergenic -22243 ENSMUSG00000094483.2 ENSMUSG00000094483 ENSMUST00000179343 Purb protein_coding Interval_112766 chr4 44755770 44757223 + 0 NA promoter-TSS (ENSMUSG00000035649.17) protein_coding-promoter-TSS (ENSMUSG00000035649.17) 619 ENSMUSG00000035649.17 ENSMUSG00000035649 ENSMUST00000126968 Zcchc7 protein_coding Interval_139762 chr6 108496486 108496791 + 0 NA intron (ENSMUSG00000030102.11, intron 52 of 61) protein_coding-intron (ENSMUSG00000030102.11, intron 52 of 61) 6895 ENSMUSG00000105697.1 ENSMUSG00000105697 ENSMUST00000197023 Mir7661 miRNA Interval_152260 chr7 131042276 131043054 + 0 NA intron (ENSMUSG00000047517.12, intron 5 of 40) protein_coding-intron (ENSMUSG00000047517.12, intron 3 of 46) 10612 ENSMUSG00000047517.12 ENSMUSG00000047517 ENSMUST00000209167 Dmbt1 protein_coding Interval_55926 chr14 102805983 102806720 + 0 NA TTS (ENSMUSG00000088971.1) rRNA-TTS (ENSMUSG00000088971.1) 252 ENSMUSG00000088971.1 ENSMUSG00000088971 ENSMUST00000158346 Gm23764 rRNA Interval_82384 chr18 73571912 73574062 + 0 NA promoter-TSS (ENSMUSG00000037253.8) protein_coding-promoter-TSS (ENSMUSG00000037253.8) -57 ENSMUSG00000037253.8 ENSMUSG00000037253 ENSMUST00000091852 Mex3c protein_coding Interval_19202 chr10 95475956 95476468 + 0 NA Intergenic Intergenic 1905 ENSMUSG00000112450.1 ENSMUSG00000112450 ENSMUST00000219947 Gm3619 processed_pseudogene Interval_6473 chr1 111139476 111139702 + 0 NA Intergenic Intergenic -162005 ENSMUSG00000047216.8 ENSMUSG00000047216 ENSMUST00000187555 Cdh19 protein_coding Interval_69362 chr16 92468267 92469125 + 0 NA intron (ENSMUSG00000022951.16, intron 1 of 3) protein_coding-intron (ENSMUSG00000022951.16, intron 1 of 3) -10046 ENSMUSG00000051297.8 ENSMUSG00000051297 ENSMUST00000160494 2410124H12Rik sense_overlapping Interval_134735 chr6 31078195 31078834 + 0 NA Intergenic Intergenic -15019 ENSMUSG00000097998.1 ENSMUSG00000097998 ENSMUST00000183056 Gm27019 lincRNA Interval_87982 chr19 57558457 57559252 + 0 NA Intergenic Intergenic -14631 ENSMUSG00000117770.1 ENSMUSG00000117770 ENSMUST00000235373 Gm50285 lincRNA Interval_4848 chr1 80224767 80225235 + 0 NA promoter-TSS (ENSMUSG00000101257.1) lincRNA-promoter-TSS (ENSMUSG00000101257.1) -43 ENSMUSG00000101257.1 ENSMUSG00000101257 ENSMUST00000191452 2310015K22Rik lincRNA Interval_86434 chr19 40462829 40463078 + 0 NA intron (ENSMUSG00000025006.18, intron 1 of 23) protein_coding-intron (ENSMUSG00000025006.18, intron 1 of 3) -86079 ENSMUSG00000025006.18 ENSMUSG00000025006 ENSMUST00000225293 Sorbs1 protein_coding Interval_54585 chr14 70833039 70833213 + 0 NA Intergenic Intergenic -19807 ENSMUSG00000099528.1 ENSMUSG00000099528 ENSMUST00000190896 2410012E07Rik lincRNA Interval_26274 chr11 55581715 55582489 + 0 NA intron (ENSMUSG00000000263.15, intron 1 of 8) protein_coding-intron (ENSMUSG00000000263.15, intron 1 of 8) 25631 ENSMUSG00000000263.15 ENSMUSG00000000263 ENSMUST00000102716 Glra1 protein_coding Interval_91641 chr2 45115797 45117566 + 0 NA exon (ENSMUSG00000026872.18, exon 2 of 2) protein_coding-exon (ENSMUSG00000026872.18, exon 2 of 2) 714 ENSMUSG00000026872.18 ENSMUSG00000026872 ENSMUST00000238346 Zeb2 protein_coding Interval_111443 chr4 21695640 21696870 + 0 NA Intergenic Intergenic -10474 ENSMUSG00000040478.14 ENSMUSG00000040478 ENSMUST00000139568 Prdm13 protein_coding Interval_43570 chr13 33662652 33662886 + 0 NA intron (ENSMUSG00000047889.9, intron 1 of 6) protein_coding-intron (ENSMUSG00000047889.9, intron 1 of 6) 1294 ENSMUSG00000047889.9 ENSMUSG00000047889 ENSMUST00000221681 Serpinb6d protein_coding Interval_88096 chr19 59074773 59076342 + 0 NA exon (ENSMUSG00000041362.17, exon 1 of 17) protein_coding-exon (ENSMUSG00000041362.17, exon 1 of 17) -12014 ENSMUSG00000118377.1 ENSMUSG00000118377 ENSMUST00000237392 Gm9276 processed_pseudogene Interval_74945 chr17 57677666 57677863 + 0 NA Intergenic Intergenic -64035 ENSMUSG00000117082.1 ENSMUSG00000117082 ENSMUST00000233731 Gm18139 processed_pseudogene Interval_55583 chr14 93770850 93771288 + 0 NA intron (ENSMUSG00000055421.8, intron 2 of 4) protein_coding-intron (ENSMUSG00000055421.8, intron 1 of 3) 30104 ENSMUSG00000115471.1 ENSMUSG00000115471 ENSMUST00000227609 C230086J09Rik TEC Interval_48206 chr13 97172516 97173151 + 0 NA intron (ENSMUSG00000021666.16, intron 18 of 18) protein_coding-intron (ENSMUSG00000021666.16, intron 18 of 20) 25462 ENSMUSG00000021665.9 ENSMUSG00000021665 ENSMUST00000222700 Hexb protein_coding Interval_72813 chr17 32320235 32321999 + 0 NA promoter-TSS (ENSMUSG00000024045.6) protein_coding-promoter-TSS (ENSMUSG00000024045.6) -4996 ENSMUSG00000024045.6 ENSMUSG00000024045 ENSMUST00000235702 Akap8 protein_coding Interval_126666 chr5 91913569 91913807 + 0 NA promoter-TSS (ENSMUSG00000107301.1) lincRNA-promoter-TSS (ENSMUSG00000107301.1) -285 ENSMUSG00000107301.1 ENSMUSG00000107301 ENSMUST00000202249 Gm43688 lincRNA Interval_113534 chr4 55669094 55669907 + 0 NA Intergenic Intergenic 64351 ENSMUSG00000085375.1 ENSMUSG00000085375 ENSMUST00000123620 Gm12506 lincRNA Interval_153083 chr7 141249186 141249887 + 0 NA intron (ENSMUSG00000038611.17, intron 8 of 16) protein_coding-intron (ENSMUSG00000038611.17, intron 9 of 17) 14113 ENSMUSG00000038611.17 ENSMUSG00000038611 ENSMUST00000144250 Phrf1 protein_coding Interval_24670 chr11 35788530 35788735 + 0 NA exon (ENSMUSG00000018846.8, exon 7 of 7) protein_coding-exon (ENSMUSG00000018846.8, exon 7 of 7) -4149 ENSMUSG00000082688.1 ENSMUSG00000082688 ENSMUST00000120504 Gm12124 processed_pseudogene Interval_146341 chr7 45419810 45420766 + 0 NA promoter-TSS (ENSMUSG00000100916.3) protein_coding-promoter-TSS (ENSMUSG00000100916.3) -532 ENSMUSG00000100916.3 ENSMUSG00000100916 ENSMUST00000072453 Lhb protein_coding Interval_140609 chr6 120069649 120070326 + 0 NA Intergenic Intergenic -23363 ENSMUSG00000041377.12 ENSMUSG00000041377 ENSMUST00000035244 Ninj2 protein_coding Interval_92166 chr2 55154186 55154363 + 0 NA Intergenic Intergenic -137791 ENSMUSG00000082301.1 ENSMUSG00000082301 ENSMUST00000117686 Gm14032 processed_pseudogene Interval_55525 chr14 90667319 90667665 + 0 NA TTS (ENSMUSG00000115292.1) lincRNA-TTS (ENSMUSG00000115292.1) 23953 ENSMUSG00000115292.1 ENSMUSG00000115292 ENSMUST00000226296 Gm33246 lincRNA Interval_172757 chrX 48343133 48344856 + 0 NA intron (ENSMUSG00000036959.15, intron 1 of 13) protein_coding-intron (ENSMUSG00000036959.15, intron 1 of 13) 1933 ENSMUSG00000036959.15 ENSMUSG00000036959 ENSMUST00000142160 Bcorl1 protein_coding Interval_60729 chr15 76409624 76410251 + 0 NA TTS (ENSMUSG00000022558.16) protein_coding-TTS (ENSMUSG00000022558.16) -23277 ENSMUSG00000099260.1 ENSMUSG00000099260 ENSMUST00000183412 Mir6954 miRNA Interval_85370 chr19 25277676 25278171 + 0 NA intron (ENSMUSG00000032702.16, intron 2 of 13) protein_coding-intron (ENSMUSG00000032702.16, intron 2 of 13) 69280 ENSMUSG00000118238.1 ENSMUSG00000118238 ENSMUST00000235913 Gm34432 processed_pseudogene Interval_170643 chr9 109862220 109863102 + 0 NA Intergenic Intergenic -13044 ENSMUSG00000038357.10 ENSMUSG00000038357 ENSMUST00000112022 Camp protein_coding Interval_63159 chr15 99440449 99440828 + 0 NA intron (ENSMUSG00000023009.14, intron 1 of 12) protein_coding-intron (ENSMUSG00000023009.14, intron 1 of 12) 12937 ENSMUSG00000089968.1 ENSMUSG00000089968 ENSMUST00000159738 Nckap5los antisense Interval_139565 chr6 101215404 101215664 + 0 NA intron (ENSMUSG00000097834.2, intron 1 of 2) protein_coding-intron (ENSMUSG00000035357.17, intron 3 of 9) -16348 ENSMUSG00000035357.17 ENSMUSG00000035357 ENSMUST00000151175 Pdzrn3 protein_coding Interval_64719 chr16 14445352 14445852 + 0 NA intron (ENSMUSG00000023088.17, intron 17 of 30) protein_coding-intron (ENSMUSG00000023088.17, intron 17 of 30) 38144 ENSMUSG00000116439.1 ENSMUSG00000116439 ENSMUST00000231182 Gm49528 unprocessed_pseudogene Interval_15751 chr10 55979411 55980395 + 0 NA Intergenic Intergenic 122100 ENSMUSG00000112528.1 ENSMUSG00000112528 ENSMUST00000218919 Gm29794 processed_pseudogene Interval_104052 chr3 57720607 57720811 + 0 NA Intergenic Intergenic -2420 ENSMUSG00000104623.1 ENSMUSG00000104623 ENSMUST00000197077 Gm6394 processed_pseudogene Interval_115162 chr4 92523807 92524072 + 0 NA Intergenic Intergenic -4612 ENSMUSG00000085209.1 ENSMUSG00000085209 ENSMUST00000130501 Gm12637 lincRNA Interval_53276 chr14 55734230 55734515 + 0 NA Intergenic Intergenic 5288 ENSMUSG00000002332.16 ENSMUSG00000002332 ENSMUST00000142043 Dhrs1 protein_coding Interval_117892 chr4 126905980 126906381 + 0 NA intron (ENSMUSG00000042446.16, intron 5 of 23) protein_coding-intron (ENSMUSG00000042446.16, intron 11 of 29) -45068 ENSMUSG00000088984.1 ENSMUSG00000088984 ENSMUST00000158359 Gm25604 snoRNA Interval_31295 chr11 99398722 99399016 + 0 NA Intergenic Intergenic 11529 ENSMUSG00000087692.1 ENSMUSG00000087692 ENSMUST00000153599 Gm11940 antisense Interval_93410 chr2 72913356 72913577 + 0 NA Intergenic Intergenic 37521 ENSMUSG00000092851.1 ENSMUSG00000092851 ENSMUST00000175110 Gm25960 miRNA Interval_31328 chr11 99993452 99994037 + 0 NA exon (ENSMUSG00000078252.1, exon 1 of 1) protein_coding-exon (ENSMUSG00000078252.1, exon 1 of 1) 250 ENSMUSG00000078252.1 ENSMUSG00000078252 ENSMUST00000105049 Krtap17-1 protein_coding Interval_23499 chr11 22971347 22973116 + 0 NA promoter-TSS (ENSMUSG00000044068.7) protein_coding-promoter-TSS (ENSMUSG00000044068.7) 628 ENSMUSG00000051355.18 ENSMUSG00000051355 ENSMUST00000093270 Commd1 protein_coding Interval_82960 chr18 80016507 80016766 + 0 NA TTS (ENSMUSG00000118357.1) processed_pseudogene-TTS (ENSMUSG00000118357.1) 351 ENSMUSG00000118357.1 ENSMUSG00000118357 ENSMUST00000237241 Gm36627 processed_pseudogene Interval_3732 chr1 62564132 62565040 + 0 NA intron (ENSMUSG00000052062.14, intron 20 of 21) protein_coding-intron (ENSMUSG00000052062.14, intron 20 of 21) -28644 ENSMUSG00000100750.1 ENSMUSG00000100750 ENSMUST00000185587 Gm29084 antisense Interval_61483 chr15 81900915 81901117 + 0 NA intron (ENSMUSG00000022477.13, intron 2 of 2) protein_coding-intron (ENSMUSG00000022477.13, intron 4 of 17) 24380 ENSMUSG00000022476.8 ENSMUSG00000022476 ENSMUST00000229402 Polr3h protein_coding Interval_95359 chr2 106911511 106911731 + 0 NA Intergenic Intergenic -5150 ENSMUSG00000085530.1 ENSMUSG00000085530 ENSMUST00000137252 Gm13901 processed_pseudogene Interval_2609 chr1 42186006 42187029 + 0 NA Intergenic Intergenic -6129 ENSMUSG00000101877.1 ENSMUSG00000101877 ENSMUST00000191297 Gm8176 processed_pseudogene Interval_93003 chr2 69482650 69482954 + 0 NA exon (ENSMUSG00000027070.14, exon 40 of 79) protein_coding-exon (ENSMUSG00000027070.14, exon 40 of 79) 26343 ENSMUSG00000027070.14 ENSMUSG00000027070 ENSMUST00000092551 Lrp2 protein_coding Interval_80390 chr18 41420147 41420622 + 0 NA Intergenic Intergenic 57497 ENSMUSG00000118299.1 ENSMUSG00000118299 ENSMUST00000235734 Gm50408 processed_pseudogene Interval_73519 chr17 38870657 38871042 + 0 NA Intergenic Intergenic -6078 ENSMUSG00000117043.1 ENSMUSG00000117043 ENSMUST00000233365 Gm49822 processed_pseudogene Interval_102908 chr3 32716843 32717641 + 0 NA intron (ENSMUSG00000027671.14, intron 5 of 7) protein_coding-intron (ENSMUSG00000027671.14, intron 5 of 13) 4847 ENSMUSG00000103590.1 ENSMUSG00000103590 ENSMUST00000194497 Gm37353 TEC Interval_142798 chr6 145793017 145793550 + 0 NA intron (ENSMUSG00000030259.12, intron 1 of 2) protein_coding-intron (ENSMUSG00000030259.12, intron 1 of 4) 42712 ENSMUSG00000030259.12 ENSMUSG00000030259 ENSMUST00000058538 Rassf8 protein_coding Interval_161481 chr8 120652360 120652768 + 0 NA intron (ENSMUSG00000097500.1, intron 1 of 2) protein_coding-intron (ENSMUSG00000092329.1, intron 1 of 15) -4932 ENSMUSG00000043687.15 ENSMUSG00000043687 ENSMUST00000144417 1190005I06Rik protein_coding Interval_33061 chr11 114049694 114050007 + 0 NA intron (ENSMUSG00000041592.16, intron 1 of 11) protein_coding-intron (ENSMUSG00000041592.16, intron 1 of 44) -41556 ENSMUSG00000086760.1 ENSMUSG00000086760 ENSMUST00000129365 1700025D23Rik lincRNA Interval_8355 chr1 137863241 137863587 + 0 NA Intergenic Intergenic -35181 ENSMUSG00000098243.3 ENSMUSG00000098243 ENSMUST00000182127 Gm4258 processed_transcript Interval_87709 chr19 55270834 55272126 + 0 NA exon (ENSMUSG00000024982.10, exon 18 of 18) protein_coding-exon (ENSMUSG00000024982.10, exon 18 of 18) -12854 ENSMUSG00000024981.6 ENSMUSG00000024981 ENSMUST00000224414 Acsl5 protein_coding Interval_163213 chr9 18356679 18356944 + 0 NA intron (ENSMUSG00000043943.14, intron 11 of 21) protein_coding-intron (ENSMUSG00000043943.14, intron 10 of 20) -43731 ENSMUSG00000110944.1 ENSMUSG00000110944 ENSMUST00000216944 Gm19174 processed_pseudogene Interval_65178 chr16 20371669 20373065 + 0 NA intron (ENSMUSG00000022822.16, intron 2 of 3) protein_coding-intron (ENSMUSG00000022822.16, intron 16 of 29) 26581 ENSMUSG00000022822.16 ENSMUSG00000022822 ENSMUST00000231522 Abcc5 protein_coding Interval_92593 chr2 61051806 61052539 + 0 NA Intergenic Intergenic -21202 ENSMUSG00000083334.1 ENSMUSG00000083334 ENSMUST00000118519 Gm13579 processed_pseudogene Interval_156952 chr8 62217869 62218570 + 0 NA Intergenic Intergenic -24007 ENSMUSG00000110252.1 ENSMUSG00000110252 ENSMUST00000211074 Gm2961 processed_pseudogene Interval_21698 chr11 3774294 3775220 + 0 NA promoter-TSS (ENSMUSG00000020435.17) protein_coding-promoter-TSS (ENSMUSG00000020435.17) -25 ENSMUSG00000020435.17 ENSMUSG00000020435 ENSMUST00000135250 Osbp2 protein_coding Interval_56630 chr14 120960112 120961142 + 0 NA Intergenic Intergenic 44780 ENSMUSG00000030662.10 ENSMUSG00000030662 ENSMUST00000228277 Ipo5 protein_coding Interval_123398 chr5 32204335 32205048 + 0 NA Intergenic Intergenic 19194 ENSMUSG00000107220.1 ENSMUSG00000107220 ENSMUST00000200908 Gm9555 processed_pseudogene Interval_59847 chr15 59754814 59755613 + 0 NA Intergenic Intergenic 39746 ENSMUSG00000115426.1 ENSMUSG00000115426 ENSMUST00000228865 Gm19510 lincRNA Interval_95243 chr2 105126115 105128107 + 0 NA promoter-TSS (ENSMUSG00000016458.15) protein_coding-promoter-TSS (ENSMUSG00000016458.15) -708 ENSMUSG00000074987.9 ENSMUSG00000074987 ENSMUST00000174870 Wt1os antisense Interval_171509 chr9 118943930 118944534 + 0 NA intron (ENSMUSG00000047409.13, intron 1 of 5) protein_coding-intron (ENSMUSG00000047409.13, intron 1 of 7) 14365 ENSMUSG00000047409.13 ENSMUSG00000047409 ENSMUST00000174132 Ctdspl protein_coding Interval_94471 chr2 91444421 91445161 + 0 NA promoter-TSS (ENSMUSG00000040591.18) protein_coding-promoter-TSS (ENSMUSG00000040591.18) -148 ENSMUSG00000040591.18 ENSMUSG00000040591 ENSMUST00000141262 1110051M20Rik protein_coding Interval_1048 chr1 14461709 14462905 + 0 NA Intergenic Intergenic -157737 ENSMUSG00000025932.14 ENSMUSG00000025932 ENSMUST00000185329 Eya1 protein_coding Interval_101598 chr3 7514723 7515501 + 0 NA intron (ENSMUSG00000043542.12, intron 1 of 7) protein_coding-intron (ENSMUSG00000043542.12, intron 1 of 8) 11626 ENSMUSG00000043542.12 ENSMUSG00000043542 ENSMUST00000192835 Zc2hc1a protein_coding Interval_92754 chr2 65142962 65143480 + 0 NA intron (ENSMUSG00000034903.18, intron 2 of 3) protein_coding-intron (ENSMUSG00000034903.18, intron 2 of 12) -95535 ENSMUSG00000086881.1 ENSMUSG00000086881 ENSMUST00000137582 Gm13594 antisense Interval_169625 chr9 99523968 99524219 + 0 NA intron (ENSMUSG00000032468.11, intron 9 of 10) protein_coding-intron (ENSMUSG00000032468.11, intron 10 of 21) 44570 ENSMUSG00000032468.11 ENSMUSG00000032468 ENSMUST00000191370 Armc8 protein_coding Interval_65963 chr16 30561597 30562030 + 0 NA exon (ENSMUSG00000022538.20, exon 14 of 14) protein_coding-exon (ENSMUSG00000022538.20, exon 14 of 14) 13430 ENSMUSG00000022538.20 ENSMUSG00000022538 ENSMUST00000129004 Lsg1 protein_coding Interval_150777 chr7 114311176 114312045 + 0 NA Intergenic Intergenic -35543 ENSMUSG00000030751.18 ENSMUSG00000030751 ENSMUST00000210966 Psma1 protein_coding Interval_97780 chr2 143992066 143992445 + 0 NA intron (ENSMUSG00000027422.15, intron 1 of 2) protein_coding-intron (ENSMUSG00000027422.15, intron 1 of 23) -34610 ENSMUSG00000027422.15 ENSMUSG00000027422 ENSMUST00000037875 Rrbp1 protein_coding Interval_50970 chr14 21414534 21415018 + 0 NA intron (ENSMUSG00000039197.10, intron 9 of 10) protein_coding-intron (ENSMUSG00000039197.10, intron 9 of 10) -35698 ENSMUSG00000088873.1 ENSMUSG00000088873 ENSMUST00000158248 Gm25864 snRNA Interval_101925 chr3 11616512 11616811 + 0 NA Intergenic Intergenic 42849 ENSMUSG00000098085.1 ENSMUSG00000098085 ENSMUST00000182028 Gm8919 processed_pseudogene Interval_51534 chr14 29939523 29941504 + 0 NA Intergenic Intergenic 20868 ENSMUSG00000114424.1 ENSMUSG00000114424 ENSMUST00000223774 Gm47414 lincRNA Interval_53928 chr14 63467197 63467644 + 0 NA Intergenic Intergenic 7956 ENSMUSG00000114258.1 ENSMUSG00000114258 ENSMUST00000226020 Gm47074 processed_pseudogene Interval_168864 chr9 88220412 88221032 + 0 NA Intergenic Intergenic -39173 ENSMUSG00000100782.1 ENSMUSG00000100782 ENSMUST00000190118 Gm28231 lincRNA Interval_55145 chr14 78649785 78651412 + 0 NA intron (ENSMUSG00000034731.11, intron 1 of 15) protein_coding-intron (ENSMUSG00000034731.11, intron 3 of 28) -21324 ENSMUSG00000034731.11 ENSMUSG00000034731 ENSMUST00000227820 Dgkh protein_coding Interval_149975 chr7 104057124 104057658 + 0 NA exon (ENSMUSG00000090219.3, exon 2 of 2) protein_coding-exon (ENSMUSG00000090219.3, exon 2 of 2) 2209 ENSMUSG00000090219.3 ENSMUSG00000090219 ENSMUST00000217217 4930516K23Rik protein_coding Interval_141691 chr6 133511562 133512705 + 0 NA Intergenic Intergenic -17089 ENSMUSG00000095412.3 ENSMUSG00000095412 ENSMUST00000203357 Gm5885 transcribed_unprocessed_pseudogene Interval_25208 chr11 45404278 45404844 + 0 NA Intergenic Intergenic 16223 ENSMUSG00000085476.1 ENSMUSG00000085476 ENSMUST00000123422 Gm12162 lincRNA Interval_67439 chr16 48634653 48635065 + 0 NA Intergenic Intergenic 115589 ENSMUSG00000116640.1 ENSMUSG00000116640 ENSMUST00000231404 Gm8670 processed_pseudogene Interval_154475 chr8 18558105 18558340 + 0 NA Intergenic Intergenic -37354 ENSMUSG00000039842.15 ENSMUSG00000039842 ENSMUST00000141244 Mcph1 protein_coding Interval_26136 chr11 54693879 54694852 + 0 NA exon (ENSMUSG00000037533.20, exon 28 of 29) protein_coding-exon (ENSMUSG00000037533.20, exon 28 of 29) -34312 ENSMUSG00000086039.1 ENSMUSG00000086039 ENSMUST00000147847 Gm12227 antisense Interval_173067 chrX 70330451 70331014 + 0 NA Intergenic Intergenic 30359 ENSMUSG00000035847.15 ENSMUSG00000035847 ENSMUST00000130519 Ids protein_coding Interval_94435 chr2 91209837 91210468 + 0 NA intron (ENSMUSG00000002103.16, intron 10 of 10) protein_coding-intron (ENSMUSG00000002103.16, intron 10 of 10) 7240 ENSMUSG00000002103.16 ENSMUSG00000002103 ENSMUST00000127643 Acp2 protein_coding Interval_132689 chr5 147174175 147174921 + 0 NA Intergenic Intergenic -14148 ENSMUSG00000053129.5 ENSMUSG00000053129 ENSMUST00000065382 Gsx1 protein_coding Interval_159318 chr8 93469727 93470411 + 0 NA Intergenic Intergenic 16678 ENSMUSG00000118579.1 ENSMUSG00000118579 ENSMUST00000239350 AC162945.1 unprocessed_pseudogene Interval_125744 chr5 73803967 73805390 + 0 NA Intergenic Intergenic -108218 ENSMUSG00000107027.1 ENSMUSG00000107027 ENSMUST00000202487 1700019F05Rik lincRNA Interval_4095 chr1 68096047 68096270 + 0 NA intron (ENSMUSG00000062209.15, intron 20 of 26) protein_coding-intron (ENSMUSG00000062209.15, intron 20 of 27) 20389 ENSMUSG00000102449.1 ENSMUSG00000102449 ENSMUST00000193344 Gm37100 TEC Interval_4737 chr1 78156800 78158021 + 0 NA intron (ENSMUSG00000004872.15, intron 4 of 7) protein_coding-intron (ENSMUSG00000004872.15, intron 4 of 8) 39703 ENSMUSG00000004872.15 ENSMUSG00000004872 ENSMUST00000172555 Pax3 protein_coding Interval_169158 chr9 94694477 94694807 + 0 NA intron (ENSMUSG00000031129.9, intron 2 of 4) protein_coding-intron (ENSMUSG00000031129.9, intron 2 of 15) 7677 ENSMUSG00000089709.1 ENSMUSG00000089709 ENSMUST00000162306 Gm16262 antisense Interval_12356 chr1 192449467 192451031 + 0 NA intron (ENSMUSG00000058248.12, intron 10 of 10) protein_coding-intron (ENSMUSG00000058248.12, intron 10 of 10) 15509 ENSMUSG00000058248.12 ENSMUSG00000058248 ENSMUST00000151152 Kcnh1 protein_coding Interval_93424 chr2 72970308 72970957 + 0 NA promoter-TSS (ENSMUSG00000027109.16) protein_coding-promoter-TSS (ENSMUSG00000027109.16) -166 ENSMUSG00000027109.16 ENSMUSG00000027109 ENSMUST00000141372 Sp3 protein_coding Interval_18548 chr10 87447440 87448433 + 0 NA Intergenic Intergenic 45724 ENSMUSG00000020052.9 ENSMUSG00000020052 ENSMUST00000020243 Ascl1 protein_coding Interval_155440 chr8 33614665 33614898 + 0 NA intron (ENSMUSG00000009630.10, intron 3 of 6) protein_coding-intron (ENSMUSG00000009630.10, intron 3 of 6) 15156 ENSMUSG00000009630.10 ENSMUSG00000009630 ENSMUST00000009774 Ppp2cb protein_coding Interval_45417 chr13 55013647 55013890 + 0 NA intron (ENSMUSG00000025877.14, intron 5 of 17) protein_coding-intron (ENSMUSG00000025877.14, intron 6 of 18) 7466 ENSMUSG00000025877.14 ENSMUSG00000025877 ENSMUST00000135983 Hk3 protein_coding Interval_173291 chrX 77314553 77316155 + 0 NA Intergenic Intergenic 22693 ENSMUSG00000082517.1 ENSMUSG00000082517 ENSMUST00000117494 Gm5757 processed_pseudogene Interval_124475 chr5 48609045 48610830 + 0 NA intron (ENSMUSG00000029088.16, intron 1 of 8) protein_coding-intron (ENSMUSG00000029088.16, intron 1 of 8) 17216 ENSMUSG00000105574.1 ENSMUSG00000105574 ENSMUST00000197775 Gm43648 TEC Interval_117407 chr4 123530680 123532240 + 0 NA intron (ENSMUSG00000028649.21, intron 5 of 9) protein_coding-intron (ENSMUSG00000028649.21, intron 5 of 92) 41229 ENSMUSG00000089588.1 ENSMUSG00000089588 ENSMUST00000158963 Gm23548 misc_RNA Interval_168179 chr9 77781160 77782002 + 0 NA TTS (ENSMUSG00000032350.9) protein_coding-TTS (ENSMUSG00000032350.9) 15439 ENSMUSG00000032350.9 ENSMUSG00000032350 ENSMUST00000216848 Gclc protein_coding Interval_132021 chr5 142332767 142333861 + 0 NA Intergenic Intergenic 50208 ENSMUSG00000097947.1 ENSMUSG00000097947 ENSMUST00000182990 Gm26970 processed_pseudogene Interval_164967 chr9 43491477 43493078 + 0 NA Intergenic Intergenic 22855 ENSMUSG00000100836.1 ENSMUSG00000100836 ENSMUST00000186146 Gm28215 lincRNA Interval_58406 chr15 34237392 34239006 + 0 NA promoter-TSS (ENSMUSG00000022257.4) protein_coding-promoter-TSS (ENSMUSG00000022257.4) 31630 ENSMUSG00000115808.1 ENSMUSG00000115808 ENSMUST00000226939 Gm18949 processed_pseudogene Interval_148332 chr7 80557695 80558378 + 0 NA Intergenic Intergenic 45747 ENSMUSG00000108643.1 ENSMUSG00000108643 ENSMUST00000206056 Gm44931 TEC Interval_174831 chrX 168795011 168796976 + 0 NA exon (ENSMUSG00000031355.16, exon 1 of 13) protein_coding-exon (ENSMUSG00000031355.16, exon 1 of 13) -20737 ENSMUSG00000081500.1 ENSMUSG00000081500 ENSMUST00000118747 Gm15233 processed_pseudogene Interval_79508 chr18 32522794 32523071 + 0 NA Intergenic Intergenic -22500 ENSMUSG00000108896.1 ENSMUSG00000108896 ENSMUST00000207501 Gm20136 processed_pseudogene Interval_52409 chr14 45713969 45715349 + 0 NA TTS (ENSMUSG00000082475.2) processed_pseudogene-TTS (ENSMUSG00000082475.2) -1335 ENSMUSG00000082662.1 ENSMUSG00000082662 ENSMUST00000117292 Gm15516 processed_pseudogene Interval_145822 chr7 39588513 39589232 + 0 NA promoter-TSS (ENSMUSG00000074903.5) processed_pseudogene-promoter-TSS (ENSMUSG00000074903.5) -59 ENSMUSG00000074903.5 ENSMUSG00000074903 ENSMUST00000178791 Gm2058 processed_pseudogene Interval_146827 chr7 52641985 52642693 + 0 NA Intergenic Intergenic -113126 ENSMUSG00000074092.5 ENSMUSG00000074092 ENSMUST00000117187 Gm6181 processed_pseudogene Interval_104773 chr3 72754737 72755029 + 0 NA Intergenic Intergenic -16902 ENSMUSG00000084752.1 ENSMUSG00000084752 ENSMUST00000122803 Gm22451 snRNA Interval_120662 chr4 149966573 149967244 + 0 NA Intergenic Intergenic 34357 ENSMUSG00000028980.14 ENSMUSG00000028980 ENSMUST00000152907 H6pd protein_coding Interval_79701 chr18 34597538 34597771 + 0 NA promoter-TSS (ENSMUSG00000049357.11) protein_coding-promoter-TSS (ENSMUSG00000049357.11) -309 ENSMUSG00000049357.11 ENSMUSG00000049357 ENSMUST00000129566 Brd8dc protein_coding Interval_115256 chr4 94937245 94937467 + 0 NA Intergenic Intergenic 1735 ENSMUSG00000083179.3 ENSMUSG00000083179 ENSMUST00000121965 Gm12693 processed_pseudogene Interval_146539 chr7 46720012 46721019 + 0 NA Intergenic Intergenic -6766 ENSMUSG00000040026.8 ENSMUSG00000040026 ENSMUST00000210913 Saa3 protein_coding Interval_122104 chr5 17064341 17064526 + 0 NA Intergenic Intergenic 83397 ENSMUSG00000105706.1 ENSMUSG00000105706 ENSMUST00000197388 Gm42855 processed_pseudogene Interval_79194 chr18 25566368 25568477 + 0 NA intron (ENSMUSG00000024268.16, intron 2 of 5) protein_coding-intron (ENSMUSG00000024268.16, intron 2 of 12) -30068 ENSMUSG00000114306.1 ENSMUSG00000114306 ENSMUST00000223994 Gm3227 antisense Interval_141375 chr6 127779772 127780280 + 0 NA Intergenic Intergenic -1705 ENSMUSG00000107042.1 ENSMUSG00000107042 ENSMUST00000201403 4921513H07Rik TEC Interval_53742 chr14 61347038 61347678 + 0 NA exon (ENSMUSG00000021928.9, exon 2 of 2) protein_coding-exon (ENSMUSG00000021928.9, exon 2 of 2) -4291 ENSMUSG00000089253.1 ENSMUSG00000089253 ENSMUST00000158628 Gm25716 snRNA Interval_150749 chr7 114086327 114086771 + 0 NA promoter-TSS (ENSMUSG00000110248.1) antisense-promoter-TSS (ENSMUSG00000110248.1) -349 ENSMUSG00000110248.1 ENSMUSG00000110248 ENSMUST00000210417 Gm45615 antisense Interval_252 KZ289068.1 326336 326576 + 0 NA NA NA NA NA Interval_159767 chr8 101996590 101997507 + 0 NA Intergenic Intergenic -457340 ENSMUSG00000087985.1 ENSMUSG00000087985 ENSMUST00000157360 Gm22223 snoRNA Interval_60250 chr15 69315323 69315537 + 0 NA Intergenic Intergenic 44897 ENSMUSG00000116167.1 ENSMUSG00000116167 ENSMUST00000231164 4930504C09Rik lincRNA Interval_82887 chr18 78255371 78256622 + 0 NA intron (ENSMUSG00000024552.16, intron 3 of 21) protein_coding-intron (ENSMUSG00000024552.16, intron 3 of 11) -93758 ENSMUSG00000090451.1 ENSMUSG00000090451 ENSMUST00000164064 Gm6133 protein_coding Interval_126214 chr5 82511881 82512397 + 0 NA Intergenic Intergenic 175288 ENSMUSG00000106926.1 ENSMUSG00000106926 ENSMUST00000200912 Rpl7-ps7 processed_pseudogene Interval_142736 chr6 145234201 145234663 + 0 NA intron (ENSMUSG00000030265.14, intron 2 of 5) protein_coding-intron (ENSMUSG00000030265.14, intron 2 of 4) 6795 ENSMUSG00000107756.1 ENSMUSG00000107756 ENSMUST00000203605 Gm44164 TEC Interval_113255 chr4 52438514 52439807 + 0 NA promoter-TSS (ENSMUSG00000028312.19) protein_coding-promoter-TSS (ENSMUSG00000028312.19) -106 ENSMUSG00000028312.19 ENSMUSG00000028312 ENSMUST00000142227 Smc2 protein_coding Interval_135295 chr6 38130048 38130297 + 0 NA intron (ENSMUSG00000063455.16, intron 19 of 19) protein_coding-intron (ENSMUSG00000063455.16, intron 19 of 19) 11789 ENSMUSG00000087924.1 ENSMUSG00000087924 ENSMUST00000157299 Gm23231 snRNA Interval_4764 chr1 78499356 78499636 + 0 NA exon (ENSMUSG00000090486.2, exon 2 of 2) protein_coding-exon (ENSMUSG00000090486.2, exon 2 of 2) 1669 ENSMUSG00000090486.2 ENSMUSG00000090486 ENSMUST00000190853 BC035947 protein_coding Interval_134121 chr6 20866499 20866973 + 0 NA Intergenic Intergenic 104254 ENSMUSG00000106763.1 ENSMUSG00000106763 ENSMUST00000201133 Gm19102 processed_pseudogene Interval_7509 chr1 131912312 131912630 + 0 NA intron (ENSMUSG00000026434.12, intron 1 of 6) protein_coding-intron (ENSMUSG00000026434.12, intron 1 of 6) 1937 ENSMUSG00000026434.12 ENSMUSG00000026434 ENSMUST00000187405 Nucks1 protein_coding Interval_104259 chr3 62320043 62320391 + 0 NA Intergenic Intergenic 20315 ENSMUSG00000103502.1 ENSMUSG00000103502 ENSMUST00000192267 9330121J05Rik antisense Interval_79893 chr18 35780866 35781413 + 0 NA intron (ENSMUSG00000091896.8, intron 1 of 2) protein_coding-intron (ENSMUSG00000091896.8, intron 1 of 7) 9551 ENSMUSG00000091896.8 ENSMUSG00000091896 ENSMUST00000237482 Ube2d2a protein_coding Interval_81051 chr18 53328740 53329654 + 0 NA intron (ENSMUSG00000024535.16, intron 3 of 3) protein_coding-intron (ENSMUSG00000024535.16, intron 2 of 7) 83469 ENSMUSG00000024535.16 ENSMUSG00000024535 ENSMUST00000025417 Snx24 protein_coding Interval_131258 chr5 136040016 136040421 + 0 NA exon (ENSMUSG00000042985.7, exon 3 of 6) protein_coding-exon (ENSMUSG00000042985.7, exon 3 of 6) 1722 ENSMUSG00000042985.7 ENSMUSG00000042985 ENSMUST00000062606 Upk3b protein_coding Interval_21541 chr10 129495328 129495582 + 0 NA Intergenic Intergenic -5358 ENSMUSG00000044025.6 ENSMUSG00000044025 ENSMUST00000218901 Olfr790 protein_coding Interval_34505 chr12 4719775 4720695 + 0 NA intron (ENSMUSG00000079177.4, intron 6 of 7) protein_coding-intron (ENSMUSG00000079177.4, intron 6 of 7) 18083 ENSMUSG00000079177.4 ENSMUSG00000079177 ENSMUST00000220075 Fam228a protein_coding Interval_85950 chr19 34057925 34058482 + 0 NA Intergenic Intergenic -1728 ENSMUSG00000118302.1 ENSMUSG00000118302 ENSMUST00000237141 Gm31300 processed_pseudogene Interval_63215 chr15 99780504 99782000 + 0 NA TTS (ENSMUSG00000023022.14) protein_coding-TTS (ENSMUSG00000023022.14) 15261 ENSMUSG00000090406.1 ENSMUSG00000090406 ENSMUST00000168951 Gm17058 antisense Interval_154857 chr8 24427374 24428299 + 0 NA intron (ENSMUSG00000097654.1, intron 2 of 2) antisense-intron (ENSMUSG00000097654.1, intron 2 of 2) 5432 ENSMUSG00000097654.1 ENSMUSG00000097654 ENSMUST00000181338 Gm26714 antisense Interval_152148 chr7 130176833 130177229 + 0 NA TTS (ENSMUSG00000030849.18) protein_coding-TTS (ENSMUSG00000030849.18) 89224 ENSMUSG00000030849.18 ENSMUSG00000030849 ENSMUST00000208844 Fgfr2 protein_coding Interval_55902 chr14 101909964 101910275 + 0 NA intron (ENSMUSG00000033060.16, intron 9 of 10) protein_coding-intron (ENSMUSG00000033060.16, intron 15 of 30) 69612 ENSMUSG00000033060.16 ENSMUSG00000033060 ENSMUST00000160038 Lmo7 protein_coding Interval_8654 chr1 146330354 146331386 + 0 NA Intergenic Intergenic -89566 ENSMUSG00000090323.2 ENSMUSG00000090323 ENSMUST00000163646 Gm5263 processed_pseudogene Interval_386 chr1 4807422 4808531 + 0 NA promoter-TSS (ENSMUSG00000025903.14) protein_coding-promoter-TSS (ENSMUSG00000025903.14) 84 ENSMUSG00000104217.1 ENSMUSG00000104217 ENSMUST00000155020 Gm37988 protein_coding Interval_18871 chr10 91576525 91577118 + 0 NA Intergenic Intergenic 64069 ENSMUSG00000111782.1 ENSMUSG00000111782 ENSMUST00000216093 Gm47091 processed_pseudogene Interval_146435 chr7 45872530 45873946 + 0 NA intron (ENSMUSG00000002778.14, intron 1 of 4) protein_coding-intron (ENSMUSG00000002778.14, intron 1 of 4) 413 ENSMUSG00000002778.14 ENSMUSG00000002778 ENSMUST00000211495 Kdelr1 protein_coding Interval_92612 chr2 61490607 61490857 + 0 NA Intergenic Intergenic -2034 ENSMUSG00000088340.1 ENSMUSG00000088340 ENSMUST00000157715 Gm22338 snoRNA Interval_21223 chr10 127299163 127299479 + 0 NA exon (ENSMUSG00000040354.14, exon 15 of 21) protein_coding-exon (ENSMUSG00000040354.14, exon 15 of 21) 8492 ENSMUSG00000116429.1 ENSMUSG00000116429 ENSMUST00000230446 Ddit3 protein_coding Interval_50452 chr14 13501566 13502697 + 0 NA intron (ENSMUSG00000056296.17, intron 3 of 5) protein_coding-intron (ENSMUSG00000056296.17, intron 3 of 5) -148051 ENSMUSG00000081115.2 ENSMUSG00000081115 ENSMUST00000118492 Gm15913 processed_pseudogene Interval_105306 chr3 84732051 84732413 + 0 NA intron (ENSMUSG00000102805.5, intron 3 of 9) protein_coding-intron (ENSMUSG00000102805.5, intron 3 of 9) 66022 ENSMUSG00000056498.13 ENSMUSG00000056498 ENSMUST00000128344 Tmem154 protein_coding Interval_11991 chr1 188598207 188598439 + 0 NA intron (ENSMUSG00000026609.15, intron 7 of 12) protein_coding-intron (ENSMUSG00000026609.15, intron 31 of 70) 24730 ENSMUSG00000077235.1 ENSMUSG00000077235 ENSMUST00000104047 Gm25095 snoRNA Interval_142431 chr6 142169664 142170122 + 0 NA intron (ENSMUSG00000092500.1, intron 2 of 2) protein_coding-intron (ENSMUSG00000079262.3, intron 1 of 14) -3475 ENSMUSG00000118597.1 ENSMUSG00000118597 ENSMUST00000239318 AC134836.1 unprocessed_pseudogene Interval_104495 chr3 66835442 66836532 + 0 NA Intergenic Intergenic -46363 ENSMUSG00000103700.1 ENSMUSG00000103700 ENSMUST00000195167 Gm6555 processed_pseudogene Interval_31255 chr11 99143250 99143990 + 0 NA TTS (ENSMUSG00000037944.8) protein_coding-TTS (ENSMUSG00000037944.8) 11457 ENSMUSG00000037944.8 ENSMUSG00000037944 ENSMUST00000103134 Ccr7 protein_coding Interval_5569 chr1 89876362 89879353 + 0 NA intron (ENSMUSG00000055013.16, intron 15 of 16) protein_coding-intron (ENSMUSG00000055013.16, intron 16 of 17) 51328 ENSMUSG00000034486.8 ENSMUSG00000034486 ENSMUST00000187633 Gbx2 protein_coding Interval_124878 chr5 58734091 58734331 + 0 NA Intergenic Intergenic 266782 ENSMUSG00000106509.1 ENSMUSG00000106509 ENSMUST00000198671 Gm43394 processed_pseudogene Interval_114160 chr4 65317734 65317950 + 0 NA intron (ENSMUSG00000028370.7, intron 17 of 21) protein_coding-intron (ENSMUSG00000028370.7, intron 17 of 21) 193668 ENSMUSG00000028370.7 ENSMUSG00000028370 ENSMUST00000084501 Pappa protein_coding Interval_139072 chr6 94760519 94761491 + 0 NA Intergenic Intergenic -38427 ENSMUSG00000107716.1 ENSMUSG00000107716 ENSMUST00000203986 Gm43997 TEC Interval_138592 chr6 89835136 89836637 + 0 NA Intergenic Intergenic -29784 ENSMUSG00000092237.2 ENSMUSG00000092237 ENSMUST00000174619 Vmn1r-ps27 transcribed_unprocessed_pseudogene Interval_47272 chr13 80398033 80398327 + 0 NA Intergenic Intergenic -94829 ENSMUSG00000114528.1 ENSMUSG00000114528 ENSMUST00000223876 Gm46388 processed_pseudogene Interval_59177 chr15 46651311 46651621 + 0 NA Intergenic Intergenic 28161 ENSMUSG00000051198.6 ENSMUSG00000051198 ENSMUST00000060825 4930548G14Rik lincRNA Interval_59078 chr15 43244694 43245010 + 0 NA Intergenic Intergenic -19932 ENSMUSG00000087905.1 ENSMUSG00000087905 ENSMUST00000157280 Gm22037 misc_RNA Interval_78727 chr18 19472503 19472708 + 0 NA Intergenic Intergenic 82355 ENSMUSG00000117407.1 ENSMUSG00000117407 ENSMUST00000234168 Gm7720 transcribed_processed_pseudogene Interval_112591 chr4 43433232 43434176 + 0 NA Intergenic Intergenic -4587 ENSMUSG00000042788.12 ENSMUSG00000042788 ENSMUST00000149676 Fam166b protein_coding Interval_150364 chr7 109925085 109925381 + 0 NA promoter-TSS (ENSMUSG00000035901.14) protein_coding-promoter-TSS (ENSMUSG00000035901.14) -27677 ENSMUSG00000035901.14 ENSMUSG00000035901 ENSMUST00000151923 Dennd5a protein_coding Interval_94740 chr2 93906720 93908216 + 0 NA Intergenic Intergenic 33410 ENSMUSG00000083009.1 ENSMUSG00000083009 ENSMUST00000121653 Gm1335 processed_pseudogene Interval_144610 chr7 27082005 27082213 + 0 NA Intergenic Intergenic 14653 ENSMUSG00000108682.1 ENSMUSG00000108682 ENSMUST00000206269 Gm29754 processed_pseudogene Interval_2762 chr1 44348350 44349205 + 0 NA Intergenic Intergenic -17741 ENSMUSG00000100966.1 ENSMUSG00000100966 ENSMUST00000191483 Gm5700 processed_pseudogene Interval_29317 chr11 82898539 82898970 + 0 NA exon (ENSMUSG00000018844.6, exon 3 of 4) protein_coding-exon (ENSMUSG00000018844.6, exon 3 of 4) 5882 ENSMUSG00000020692.14 ENSMUSG00000020692 ENSMUST00000147915 Nle1 protein_coding Interval_54082 chr14 65087054 65087405 + 0 NA intron (ENSMUSG00000021978.9, intron 1 of 6) protein_coding-intron (ENSMUSG00000021978.9, intron 1 of 6) 10876 ENSMUSG00000021978.9 ENSMUSG00000021978 ENSMUST00000223989 Extl3 protein_coding Interval_93200 chr2 71109594 71109949 + 0 NA Intergenic Intergenic -8152 ENSMUSG00000027015.4 ENSMUSG00000027015 ENSMUST00000028403 Cybrd1 protein_coding Interval_138560 chr6 89308479 89309586 + 0 NA intron (ENSMUSG00000097816.1, intron 1 of 2) antisense-intron (ENSMUSG00000097816.1, intron 1 of 2) 4402 ENSMUSG00000097816.1 ENSMUSG00000097816 ENSMUST00000181258 Gm26811 antisense Interval_6212 chr1 101918833 101919703 + 0 NA Intergenic Intergenic -24177 ENSMUSG00000099375.1 ENSMUSG00000099375 ENSMUST00000186885 Gm28187 lincRNA Interval_110923 chr4 10300000 10300221 + 0 NA Intergenic Intergenic 139633 ENSMUSG00000084215.3 ENSMUSG00000084215 ENSMUST00000119515 Gm11814 processed_pseudogene Interval_77192 chr17 87246780 87247101 + 0 NA Intergenic Intergenic 18940 ENSMUSG00000024150.12 ENSMUSG00000024150 ENSMUST00000139258 Mcfd2 protein_coding Interval_146372 chr7 45569930 45570745 + 0 NA promoter-TSS (ENSMUSG00000030826.19) protein_coding-promoter-TSS (ENSMUSG00000030826.19) -2532 ENSMUSG00000030826.19 ENSMUSG00000030826 ENSMUST00000209410 Bcat2 protein_coding Interval_74003 chr17 45969686 45970271 + 0 NA Intergenic Intergenic 8119 ENSMUSG00000117040.1 ENSMUSG00000117040 ENSMUST00000233512 Gm49805 lincRNA Interval_116307 chr4 109573117 109573393 + 0 NA intron (ENSMUSG00000087641.1, intron 1 of 2) processed_transcript-intron (ENSMUSG00000087641.1, intron 1 of 2) 4041 ENSMUSG00000087641.1 ENSMUSG00000087641 ENSMUST00000125237 Gm12811 processed_transcript Interval_94459 chr2 91376803 91377086 + 0 NA intron (ENSMUSG00000040591.18, intron 3 of 3) protein_coding-intron (ENSMUSG00000040591.18, intron 3 of 8) 30192 ENSMUSG00000080507.2 ENSMUSG00000080507 ENSMUST00000116857 Gm22071 miRNA Interval_87644 chr19 53959092 53959458 + 0 NA intron (ENSMUSG00000024976.14, intron 2 of 2) protein_coding-intron (ENSMUSG00000024976.14, intron 1 of 8) 3494 ENSMUSG00000117704.1 ENSMUSG00000117704 ENSMUST00000235879 Gm50273 TEC Interval_34425 chr12 4086857 4087703 + 0 NA intron (ENSMUSG00000020657.16, intron 2 of 8) protein_coding-intron (ENSMUSG00000020657.16, intron 2 of 6) -1302 ENSMUSG00000020657.16 ENSMUSG00000020657 ENSMUST00000220273 Dnajc27 protein_coding Interval_13284 chr10 14089052 14090200 + 0 NA intron (ENSMUSG00000015501.10, intron 3 of 4) protein_coding-intron (ENSMUSG00000015501.10, intron 2 of 8) 64820 ENSMUSG00000101014.1 ENSMUSG00000101014 ENSMUST00000189331 Gm28289 antisense Interval_4634 chr1 75559071 75560263 + 0 NA TTS (ENSMUSG00000006576.16) protein_coding-TTS (ENSMUSG00000006576.16) -8416 ENSMUSG00000083244.1 ENSMUSG00000083244 ENSMUST00000117745 Gm15180 processed_pseudogene Interval_82840 chr18 77366168 77367105 + 0 NA intron (ENSMUSG00000032818.16, intron 17 of 39) protein_coding-intron (ENSMUSG00000032818.16, intron 14 of 20) -67958 ENSMUSG00000118108.1 ENSMUSG00000118108 ENSMUST00000238018 Gm50284 antisense Interval_5668 chr1 90735910 90736114 + 0 NA Intergenic Intergenic 60851 ENSMUSG00000056128.3 ENSMUSG00000056128 ENSMUST00000070048 Gm9991 lincRNA Interval_72188 chr17 28500465 28501156 + 0 NA intron (ENSMUSG00000024222.17, intron 1 of 1) protein_coding-intron (ENSMUSG00000024222.17, intron 2 of 13) 16704 ENSMUSG00000024222.17 ENSMUSG00000024222 ENSMUST00000147716 Fkbp5 protein_coding Interval_170665 chr9 109966891 109967082 + 0 NA intron (ENSMUSG00000032479.15, intron 1 of 3) protein_coding-intron (ENSMUSG00000032479.15, intron 1 of 18) -3447 ENSMUSG00000106208.1 ENSMUSG00000106208 ENSMUST00000200117 Gm4734 processed_pseudogene Interval_109034 chr3 135318374 135318918 + 0 NA TTS (ENSMUSG00000037994.14) protein_coding-TTS (ENSMUSG00000037994.14) 10904 ENSMUSG00000037994.14 ENSMUSG00000037994 ENSMUST00000132405 Slc9b2 protein_coding Interval_583 chr1 8096646 8097395 + 0 NA Intergenic Intergenic 356471 ENSMUSG00000102647.1 ENSMUSG00000102647 ENSMUST00000192338 Gm38024 TEC Interval_44486 chr13 45315015 45315363 + 0 NA intron (ENSMUSG00000113772.1, intron 3 of 4) lincRNA-intron (ENSMUSG00000113772.1, intron 3 of 4) -20193 ENSMUSG00000088203.1 ENSMUSG00000088203 ENSMUST00000157578 Gm23755 misc_RNA Interval_93311 chr2 71859590 71860958 + 0 NA Intergenic Intergenic -13072 ENSMUSG00000006494.11 ENSMUSG00000006494 ENSMUST00000129427 Pdk1 protein_coding Interval_13377 chr10 17563045 17564041 + 0 NA intron (ENSMUSG00000112629.1, intron 2 of 2) lincRNA-intron (ENSMUSG00000112629.1, intron 2 of 2) -36629 ENSMUSG00000111927.1 ENSMUSG00000111927 ENSMUST00000220318 Gm47770 lincRNA Interval_39955 chr12 100100085 100100758 + 0 NA Intergenic Intergenic -3203 ENSMUSG00000113268.1 ENSMUSG00000113268 ENSMUST00000223195 4930477G07Rik lincRNA Interval_152101 chr7 129385099 129385536 + 0 NA intron (ENSMUSG00000070366.5, intron 5 of 5) protein_coding-intron (ENSMUSG00000070366.5, intron 6 of 6) 17773 ENSMUSG00000108713.1 ENSMUSG00000108713 ENSMUST00000206093 Gm33027 lincRNA Interval_119207 chr4 136199587 136200926 + 0 NA Intergenic Intergenic -6109 ENSMUSG00000036995.7 ENSMUSG00000036995 ENSMUST00000047526 Asap3 protein_coding Interval_68034 chr16 64366911 64367309 + 0 NA Intergenic Intergenic 235298 ENSMUSG00000068167.6 ENSMUSG00000068167 ENSMUST00000089279 Csnka2ip protein_coding Interval_75498 chr17 67480200 67481382 + 0 NA Intergenic Intergenic -70816 ENSMUSG00000087829.1 ENSMUSG00000087829 ENSMUST00000157204 Gm22277 misc_RNA Interval_60380 chr15 73360122 73360405 + 0 NA exon (ENSMUSG00000022607.18, exon 3 of 34) protein_coding-exon (ENSMUSG00000022607.18, exon 3 of 34) 10464 ENSMUSG00000088005.1 ENSMUSG00000088005 ENSMUST00000157380 Gm24787 snoRNA Interval_73093 chr17 34768285 34768526 + 0 NA Intergenic Intergenic 2240 ENSMUSG00000098809.1 ENSMUSG00000098809 ENSMUST00000183571 Gm27471 miRNA Interval_94643 chr2 92954674 92955164 + 0 NA exon (ENSMUSG00000027220.2, exon 6 of 6) protein_coding-exon (ENSMUSG00000027220.2, exon 6 of 6) 39821 ENSMUSG00000027220.2 ENSMUSG00000027220 ENSMUST00000028648 Syt13 protein_coding Interval_47324 chr13 81351590 81351953 + 0 NA promoter-TSS (ENSMUSG00000069170.14) protein_coding-promoter-TSS (ENSMUSG00000069170.14) -145 ENSMUSG00000069170.14 ENSMUSG00000069170 ENSMUST00000132045 Adgrv1 protein_coding Interval_112121 chr4 34829129 34829750 + 0 NA intron (ENSMUSG00000039967.14, intron 4 of 7) protein_coding-intron (ENSMUSG00000039967.14, intron 4 of 7) -13546 ENSMUSG00000082367.1 ENSMUSG00000082367 ENSMUST00000122250 Gm12363 processed_pseudogene Interval_135860 chr6 47977759 47979466 + 0 NA promoter-TSS (ENSMUSG00000107824.1) processed_pseudogene-promoter-TSS (ENSMUSG00000107824.1) -736 ENSMUSG00000107824.1 ENSMUSG00000107824 ENSMUST00000203599 Gm6443 processed_pseudogene Interval_72785 chr17 32173202 32173505 + 0 NA Intergenic Intergenic 9984 ENSMUSG00000117925.1 ENSMUSG00000117925 ENSMUST00000236191 Gm50127 processed_pseudogene Interval_9614 chr1 160252724 160253881 + 0 NA intron (ENSMUSG00000026721.16, intron 4 of 6) protein_coding-intron (ENSMUSG00000026721.16, intron 3 of 8) -11022 ENSMUSG00000104302.1 ENSMUSG00000104302 ENSMUST00000194105 Gm36975 antisense Interval_64973 chr16 17617295 17619856 + 0 NA promoter-TSS (ENSMUSG00000005899.14) protein_coding-promoter-TSS (ENSMUSG00000005899.14) -788 ENSMUSG00000005899.14 ENSMUSG00000005899 ENSMUST00000232270 Smpd4 protein_coding Interval_69153 chr16 90995101 90995707 + 0 NA intron (ENSMUSG00000022973.18, intron 2 of 32) protein_coding-intron (ENSMUSG00000022973.18, intron 2 of 18) 11497 ENSMUSG00000085279.1 ENSMUSG00000085279 ENSMUST00000123318 Gm15965 antisense Interval_148410 chr7 81099887 81100920 + 0 NA intron (ENSMUSG00000038763.12, intron 11 of 13) protein_coding-intron (ENSMUSG00000038763.12, intron 11 of 13) 5572 ENSMUSG00000038763.12 ENSMUSG00000038763 ENSMUST00000151115 Alpk3 protein_coding Interval_108580 chr3 129258619 129258892 + 0 NA Intergenic Intergenic -26514 ENSMUSG00000106417.1 ENSMUSG00000106417 ENSMUST00000198498 Gm42628 processed_pseudogene Interval_86105 chr19 36730505 36730717 + 0 NA Intergenic Intergenic 6042 ENSMUSG00000067279.3 ENSMUSG00000067279 ENSMUST00000087321 Ppp1r3c protein_coding Interval_107601 chr3 108818043 108818625 + 0 NA intron (ENSMUSG00000027882.18, intron 6 of 8) protein_coding-intron (ENSMUSG00000027882.18, intron 6 of 18) 22181 ENSMUSG00000027882.18 ENSMUSG00000027882 ENSMUST00000106596 Stxbp3 protein_coding Interval_133572 chr6 6914881 6915882 + 0 NA Intergenic Intergenic 8898 ENSMUSG00000065770.1 ENSMUSG00000065770 ENSMUST00000083836 Gm22155 snRNA Interval_122163 chr5 18467468 18467769 + 0 NA Intergenic Intergenic 22576 ENSMUSG00000104718.1 ENSMUSG00000104718 ENSMUST00000199456 Gm31752 lincRNA Interval_97811 chr2 144217241 144217885 + 0 NA Intergenic Intergenic -25678 ENSMUSG00000085127.1 ENSMUSG00000085127 ENSMUST00000146746 4930444E06Rik antisense Interval_115229 chr4 94613955 94615138 + 0 NA promoter-TSS (ENSMUSG00000028576.12) protein_coding-promoter-TSS (ENSMUSG00000028576.12) -11365 ENSMUSG00000028577.13 ENSMUSG00000028577 ENSMUST00000146118 Plaa protein_coding Interval_159477 chr8 94974287 94974525 + 0 NA promoter-TSS (ENSMUSG00000031785.16) protein_coding-promoter-TSS (ENSMUSG00000031785.16) -4652 ENSMUSG00000070111.4 ENSMUSG00000070111 ENSMUST00000093603 Gm10286 TEC Interval_149197 chr7 96203761 96205501 + 0 NA intron (ENSMUSG00000048078.16, intron 1 of 32) protein_coding-intron (ENSMUSG00000048078.16, intron 1 of 32) -1095 ENSMUSG00000108528.1 ENSMUSG00000108528 ENSMUST00000205708 Gm8319 processed_pseudogene Interval_133225 chr5 150680054 150680382 + 0 NA intron (ENSMUSG00000034021.15, intron 1 of 34) protein_coding-intron (ENSMUSG00000034021.15, intron 1 of 34) 6479 ENSMUSG00000034021.15 ENSMUSG00000034021 ENSMUST00000132947 Pds5b protein_coding Interval_118909 chr4 134401196 134402797 + 0 NA promoter-TSS (ENSMUSG00000037366.14) protein_coding-promoter-TSS (ENSMUSG00000037366.14) 4673 ENSMUSG00000037366.14 ENSMUSG00000037366 ENSMUST00000145626 Pafah2 protein_coding Interval_32892 chr11 112850342 112851016 + 0 NA Intergenic Intergenic 25500 ENSMUSG00000020624.3 ENSMUSG00000020624 ENSMUST00000153429 4933434M16Rik lincRNA Interval_162590 chr9 5487898 5488304 + 0 NA Intergenic Intergenic 142625 ENSMUSG00000025887.10 ENSMUSG00000025887 ENSMUST00000151332 Casp12 protein_coding Interval_174690 chrX 163180756 163181287 + 0 NA Intergenic Intergenic 27779 ENSMUSG00000083225.1 ENSMUSG00000083225 ENSMUST00000117773 Gm15215 processed_pseudogene Interval_159080 chr8 89787251 89787967 + 0 NA Intergenic Intergenic -120305 ENSMUSG00000088883.1 ENSMUSG00000088883 ENSMUST00000158258 Gm24212 snoRNA Interval_159743 chr8 100280851 100281489 + 0 NA Intergenic Intergenic -157588 ENSMUSG00000110220.1 ENSMUSG00000110220 ENSMUST00000209625 Gm45296 processed_pseudogene Interval_31930 chr11 103923259 103923508 + 0 NA intron (ENSMUSG00000034187.18, intron 4 of 8) protein_coding-intron (ENSMUSG00000034187.18, intron 4 of 20) -43140 ENSMUSG00000092540.1 ENSMUSG00000092540 ENSMUST00000172606 Gm8738 processed_pseudogene Interval_115340 chr4 97241914 97242660 + 0 NA Intergenic Intergenic 280045 ENSMUSG00000084159.1 ENSMUSG00000084159 ENSMUST00000122361 Gm12696 processed_pseudogene Interval_170617 chr9 109557304 109557722 + 0 NA intron (ENSMUSG00000074060.10, intron 5 of 5) protein_coding-intron (ENSMUSG00000074060.10, intron 6 of 9) 10737 ENSMUSG00000074060.10 ENSMUSG00000074060 ENSMUST00000198112 Fbxw15 protein_coding Interval_104628 chr3 68949455 68949645 + 0 NA intron (ENSMUSG00000027778.15, intron 4 of 4) protein_coding-intron (ENSMUSG00000027778.15, intron 8 of 18) -32227 ENSMUSG00000111756.1 ENSMUSG00000111756 ENSMUST00000217619 Gm48183 TEC Interval_136998 chr6 65831342 65831742 + 0 NA exon (ENSMUSG00000029913.14, exon 3 of 3) protein_coding-exon (ENSMUSG00000029913.14, exon 3 of 3) 32734 ENSMUSG00000088832.1 ENSMUSG00000088832 ENSMUST00000158207 Gm23543 snRNA Interval_9139 chr1 153986468 153986865 + 0 NA Intergenic Intergenic 19551 ENSMUSG00000101903.1 ENSMUSG00000101903 ENSMUST00000186055 Gm29291 lincRNA Interval_125906 chr5 75599715 75601099 + 0 NA intron (ENSMUSG00000005672.12, intron 1 of 20) protein_coding-intron (ENSMUSG00000005672.12, intron 1 of 20) -39257 ENSMUSG00000089078.1 ENSMUSG00000089078 ENSMUST00000158453 Gm24502 snRNA Interval_59517 chr15 54914298 54915669 + 0 NA promoter-TSS (ENSMUSG00000022425.16) protein_coding-promoter-TSS (ENSMUSG00000022425.16) -37087 ENSMUSG00000097286.2 ENSMUSG00000097286 ENSMUST00000181704 Gm26684 bidirectional_promoter_lncRNA Interval_37514 chr12 69489627 69490281 + 0 NA Intergenic Intergenic -14407 ENSMUSG00000113035.1 ENSMUSG00000113035 ENSMUST00000222980 5830428M24Rik processed_transcript Interval_76631 chr17 82999915 83000589 + 0 NA Intergenic Intergenic 44256 ENSMUSG00000117472.1 ENSMUSG00000117472 ENSMUST00000234284 Gm4601 processed_pseudogene Interval_50253 chr14 11371368 11372373 + 0 NA Intergenic Intergenic -15144 ENSMUSG00000097148.2 ENSMUSG00000097148 ENSMUST00000181173 Gm3839 protein_coding Interval_33652 chr11 117759846 117761296 + 0 NA exon (ENSMUSG00000025571.13, exon 22 of 22) protein_coding-exon (ENSMUSG00000025571.13, exon 22 of 22) 11340 ENSMUSG00000025571.13 ENSMUSG00000025571 ENSMUST00000141287 Tnrc6c protein_coding Interval_132248 chr5 143589600 143590511 + 0 NA Intergenic Intergenic -32446 ENSMUSG00000018001.18 ENSMUSG00000018001 ENSMUST00000110727 Cyth3 protein_coding Interval_26000 chr11 53419334 53419619 + 0 NA exon (ENSMUSG00000049470.13, exon 21 of 21) protein_coding-exon (ENSMUSG00000049470.13, exon 21 of 21) 3694 ENSMUSG00000036216.5 ENSMUSG00000036216 ENSMUST00000036045 Leap2 protein_coding Interval_80376 chr18 40342675 40342938 + 0 NA intron (ENSMUSG00000051401.7, intron 2 of 2) protein_coding-intron (ENSMUSG00000051401.7, intron 1 of 1) -3363 ENSMUSG00000117943.1 ENSMUSG00000117943 ENSMUST00000235668 Gm50403 TEC Interval_9918 chr1 164110771 164111179 + 0 NA Intergenic Intergenic -4289 ENSMUSG00000026580.16 ENSMUSG00000026580 ENSMUST00000162102 Selp protein_coding Interval_52469 chr14 46779073 46779575 + 0 NA intron (ENSMUSG00000015759.11, intron 1 of 2) protein_coding-intron (ENSMUSG00000015759.11, intron 3 of 4) 938 ENSMUSG00000015759.11 ENSMUSG00000015759 ENSMUST00000146629 Cnih1 protein_coding Interval_58564 chr15 36164152 36165414 + 0 NA promoter-TSS (ENSMUSG00000048230.6) protein_coding-promoter-TSS (ENSMUSG00000048230.6) 34 ENSMUSG00000048230.6 ENSMUSG00000048230 ENSMUST00000227781 Fbxo43 protein_coding Interval_7440 chr1 131377667 131377991 + 0 NA exon (ENSMUSG00000104060.1, exon 1 of 1) TEC-exon (ENSMUSG00000104060.1, exon 1 of 1) 702 ENSMUSG00000104060.1 ENSMUSG00000104060 ENSMUST00000195400 Gm37954 TEC Interval_59817 chr15 59536071 59536675 + 0 NA intron (ENSMUSG00000059586.10, intron 5 of 7) protein_coding-intron (ENSMUSG00000059586.10, intron 4 of 6) -82217 ENSMUSG00000115896.1 ENSMUSG00000115896 ENSMUST00000229684 Gm36677 lincRNA Interval_144854 chr7 28624178 28625650 + 0 NA intron (ENSMUSG00000037469.11, intron 2 of 12) protein_coding-intron (ENSMUSG00000037469.11, intron 2 of 12) -4334 ENSMUSG00000108905.1 ENSMUSG00000108905 ENSMUST00000208431 Gm44618 lincRNA Interval_134857 chr6 32710108 32710741 + 0 NA Intergenic Intergenic 41864 ENSMUSG00000106873.1 ENSMUSG00000106873 ENSMUST00000202626 BC049739 lincRNA Interval_117575 chr4 124762073 124762542 + 0 NA intron (ENSMUSG00000028894.18, intron 7 of 24) protein_coding-intron (ENSMUSG00000028894.18, intron 7 of 23) -10953 ENSMUSG00000086589.1 ENSMUSG00000086589 ENSMUST00000131381 Gm12915 processed_transcript Interval_36178 chr12 37930716 37931057 + 0 NA intron (ENSMUSG00000036095.11, intron 1 of 22) protein_coding-intron (ENSMUSG00000036095.11, intron 1 of 24) -7577 ENSMUSG00000113154.1 ENSMUSG00000113154 ENSMUST00000220862 Gm48713 TEC Interval_67085 chr16 42781257 42782740 + 0 NA intron (ENSMUSG00000075070.6, intron 1 of 3) lincRNA-intron (ENSMUSG00000075070.6, intron 1 of 3) 93742 ENSMUSG00000075070.6 ENSMUSG00000075070 ENSMUST00000130331 4932412D23Rik lincRNA Interval_57465 chr15 11406769 11407619 + 0 NA Intergenic Intergenic -7593 ENSMUSG00000022241.6 ENSMUSG00000022241 ENSMUST00000226904 Tars protein_coding Interval_20145 chr10 115250730 115252653 + 0 NA promoter-TSS (ENSMUSG00000020130.9) protein_coding-promoter-TSS (ENSMUSG00000020130.9) -438 ENSMUSG00000020130.9 ENSMUSG00000020130 ENSMUST00000219274 Tbc1d15 protein_coding Interval_122991 chr5 28229070 28229290 + 0 NA intron (ENSMUSG00000044681.19, intron 1 of 3) protein_coding-intron (ENSMUSG00000044681.19, intron 1 of 2) 16626 ENSMUSG00000044681.19 ENSMUSG00000044681 ENSMUST00000141196 Cnpy1 protein_coding Interval_121911 chr5 9495551 9495766 + 0 NA intron (ENSMUSG00000003974.6, intron 5 of 5) protein_coding-intron (ENSMUSG00000003974.6, intron 5 of 5) 106949 ENSMUSG00000106637.1 ENSMUSG00000106637 ENSMUST00000199761 Gm42455 TEC Interval_108259 chr3 123092358 123092610 + 0 NA intron (ENSMUSG00000050315.14, intron 1 of 1) protein_coding-intron (ENSMUSG00000050315.14, intron 4 of 4) -48749 ENSMUSG00000106114.1 ENSMUSG00000106114 ENSMUST00000197420 Gm43286 processed_pseudogene Interval_130137 chr5 124473218 124473572 + 0 NA TTS (ENSMUSG00000082402.1) processed_pseudogene-TTS (ENSMUSG00000082402.1) 968 ENSMUSG00000082402.1 ENSMUSG00000082402 ENSMUST00000119162 Gm15621 processed_pseudogene Interval_45056 chr13 51768460 51768684 + 0 NA intron (ENSMUSG00000021451.16, intron 1 of 16) protein_coding-intron (ENSMUSG00000021451.16, intron 1 of 15) 3278 ENSMUSG00000092648.1 ENSMUSG00000092648 ENSMUST00000174907 Gm23566 miRNA Interval_121812 chr5 8431861 8432061 + 0 NA intron (ENSMUSG00000054099.11, intron 4 of 5) protein_coding-intron (ENSMUSG00000054099.11, intron 5 of 11) 9103 ENSMUSG00000054099.11 ENSMUSG00000054099 ENSMUST00000198119 Slc25a40 protein_coding Interval_114886 chr4 86710047 86711307 + 0 NA Intergenic Intergenic -51994 ENSMUSG00000028494.12 ENSMUSG00000028494 ENSMUST00000134094 Plin2 protein_coding Interval_51680 chr14 31323745 31325130 + 0 NA promoter-TSS (ENSMUSG00000019027.8) protein_coding-promoter-TSS (ENSMUSG00000019027.8) 482 ENSMUSG00000115468.1 ENSMUSG00000115468 ENSMUST00000226148 Gm49217 lincRNA Interval_130352 chr5 126558454 126560082 + 0 NA Intergenic Intergenic -45287 ENSMUSG00000084551.1 ENSMUSG00000084551 ENSMUST00000122602 Gm24839 snRNA Interval_12032 chr1 188987724 188988037 + 0 NA intron (ENSMUSG00000026608.13, intron 9 of 12) protein_coding-intron (ENSMUSG00000026608.13, intron 9 of 17) 19961 ENSMUSG00000026608.13 ENSMUSG00000026608 ENSMUST00000193273 Kctd3 protein_coding Interval_105457 chr3 86783204 86783476 + 0 NA TTS (ENSMUSG00000028080.16) protein_coding-TTS (ENSMUSG00000028080.16) -4687 ENSMUSG00000104108.1 ENSMUSG00000104108 ENSMUST00000194490 Gm37876 antisense Interval_162488 chr9 3188017 3188319 + 0 NA exon (ENSMUSG00000110587.1, exon 1 of 1) processed_pseudogene-exon (ENSMUSG00000110587.1, exon 1 of 1) 1058 ENSMUSG00000110587.1 ENSMUSG00000110587 ENSMUST00000212122 Gm7344 processed_pseudogene Interval_71141 chr17 19563000 19563205 + 0 NA Intergenic Intergenic -14125 ENSMUSG00000094892.2 ENSMUSG00000094892 ENSMUST00000171914 Vmn2r101 protein_coding Interval_82800 chr18 77110630 77111196 + 0 NA intron (ENSMUSG00000025423.16, intron 3 of 14) protein_coding-intron (ENSMUSG00000025423.16, intron 3 of 12) 45668 ENSMUSG00000025423.16 ENSMUSG00000025423 ENSMUST00000168882 Pias2 protein_coding Interval_24642 chr11 35563246 35564573 + 0 NA intron (ENSMUSG00000056427.10, intron 1 of 8) protein_coding-intron (ENSMUSG00000056427.10, intron 6 of 35) -52907 ENSMUSG00000065583.1 ENSMUSG00000065583 ENSMUST00000083649 Mir218-2 miRNA Interval_111474 chr4 21951373 21952000 + 0 NA TTS (ENSMUSG00000028246.13) protein_coding-TTS (ENSMUSG00000028246.13) -6770 ENSMUSG00000028246.13 ENSMUSG00000028246 ENSMUST00000155220 Faxc protein_coding Interval_77143 chr17 86852727 86853650 + 0 NA Intergenic Intergenic 13158 ENSMUSG00000099798.1 ENSMUSG00000099798 ENSMUST00000189953 Gm29168 lincRNA Interval_89195 chr2 17982484 17983174 + 0 NA Intergenic Intergenic 14129 ENSMUSG00000062651.4 ENSMUSG00000062651 ENSMUST00000105001 H2al2a protein_coding Interval_38500 chr12 79675774 79676008 + 0 NA intron (ENSMUSG00000059060.15, intron 8 of 10) protein_coding-intron (ENSMUSG00000059060.15, intron 8 of 10) 249603 ENSMUSG00000112765.1 ENSMUSG00000112765 ENSMUST00000219857 9430078K24Rik lincRNA Interval_10841 chr1 175900987 175902085 + 0 NA TTS (ENSMUSG00000039748.11) protein_coding-TTS (ENSMUSG00000039748.11) -3009 ENSMUSG00000094820.1 ENSMUSG00000094820 ENSMUST00000180129 Gm23805 snRNA Interval_162294 chr8 126841377 126841666 + 0 NA intron (ENSMUSG00000110697.1, intron 3 of 8) lincRNA-intron (ENSMUSG00000110697.1, intron 3 of 8) 2288 ENSMUSG00000110498.1 ENSMUSG00000110498 ENSMUST00000212914 A630001O12Rik lincRNA Interval_147088 chr7 62406702 62407015 + 0 NA intron (ENSMUSG00000108986.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000108986.1, intron 1 of 2) 13281 ENSMUSG00000070527.3 ENSMUSG00000070527 ENSMUST00000094340 Mkrn3 protein_coding Interval_57054 chr15 5157465 5158117 + 0 NA intron (ENSMUSG00000050697.9, intron 1 of 8) protein_coding-intron (ENSMUSG00000050697.9, intron 1 of 8) 13900 ENSMUSG00000050697.9 ENSMUSG00000050697 ENSMUST00000228218 Prkaa1 protein_coding Interval_90716 chr2 32078108 32079614 + 0 NA intron (ENSMUSG00000050592.8, intron 2 of 5) protein_coding-intron (ENSMUSG00000050592.8, intron 1 of 1) 5996 ENSMUSG00000050592.8 ENSMUSG00000050592 ENSMUST00000143795 Fam78a protein_coding Interval_141285 chr6 126873897 126874094 + 0 NA exon (ENSMUSG00000030344.11, exon 6 of 6) protein_coding-exon (ENSMUSG00000030344.11, exon 6 of 6) 11389 ENSMUSG00000030345.16 ENSMUSG00000030345 ENSMUST00000032495 Dyrk4 protein_coding Interval_165954 chr9 54915010 54915258 + 0 NA Intergenic Intergenic -2213 ENSMUSG00000035878.13 ENSMUSG00000035878 ENSMUST00000135648 Hykk protein_coding Interval_57934 chr15 25602038 25604703 + 0 NA Intergenic Intergenic -10279 ENSMUSG00000115204.1 ENSMUSG00000115204 ENSMUST00000228618 Gm36642 lincRNA Interval_155375 chr8 32883210 32885154 + 0 NA promoter-TSS (ENSMUSG00000062991.9) protein_coding-promoter-TSS (ENSMUSG00000062991.9) 58300 ENSMUSG00000079070.10 ENSMUSG00000079070 ENSMUST00000180220 Gm3985 lincRNA Interval_133795 chr6 12276156 12276343 + 0 NA Intergenic Intergenic 147623 ENSMUSG00000108209.1 ENSMUSG00000108209 ENSMUST00000203296 Gm32222 processed_pseudogene Interval_17780 chr10 80039281 80040369 + 0 NA promoter-TSS (ENSMUSG00000004667.18) protein_coding-promoter-TSS (ENSMUSG00000004667.18) -124 ENSMUSG00000004667.18 ENSMUSG00000004667 ENSMUST00000152843 Polr2e protein_coding Interval_23830 chr11 26753465 26754643 + 0 NA Intergenic Intergenic -32579 ENSMUSG00000069939.8 ENSMUSG00000069939 ENSMUST00000119551 Gm12070 processed_pseudogene Interval_42233 chr13 10540326 10540831 + 0 NA exon (ENSMUSG00000113243.1, exon 4 of 5) lincRNA-exon (ENSMUSG00000113243.1, exon 4 of 5) -14109 ENSMUSG00000097009.2 ENSMUSG00000097009 ENSMUST00000222084 Gm26861 antisense Interval_37532 chr12 69634627 69634964 + 0 NA intron (ENSMUSG00000034801.13, intron 6 of 22) protein_coding-intron (ENSMUSG00000034801.13, intron 6 of 22) -17676 ENSMUSG00000034801.13 ENSMUSG00000034801 ENSMUST00000183306 Sos2 protein_coding Interval_101187 chr2 179176642 179177737 + 0 NA promoter-TSS (ENSMUSG00000061897.5) processed_pseudogene-promoter-TSS (ENSMUSG00000061897.5) -236 ENSMUSG00000061897.5 ENSMUSG00000061897 ENSMUST00000118761 Gm14292 processed_pseudogene Interval_57819 chr15 21517515 21517737 + 0 NA intron (ENSMUSG00000040452.9, intron 6 of 12) protein_coding-intron (ENSMUSG00000040452.9, intron 5 of 11) 337469 ENSMUSG00000103296.1 ENSMUSG00000103296 ENSMUST00000195204 Gm38234 TEC Interval_134445 chr6 28785071 28785272 + 0 NA intron (ENSMUSG00000001424.14, intron 1 of 3) protein_coding-intron (ENSMUSG00000001424.14, intron 15 of 23) -11292 ENSMUSG00000103899.1 ENSMUSG00000103899 ENSMUST00000194243 Gm37940 TEC Interval_7731 chr1 133329238 133329895 + 0 NA exon (ENSMUSG00000116158.1, exon 3 of 3) protein_coding-exon (ENSMUSG00000116158.1, exon 3 of 3) 2354 ENSMUSG00000116158.1 ENSMUSG00000116158 ENSMUST00000178033 Kiss1 protein_coding Interval_126995 chr5 99280019 99280302 + 0 NA TTS (ENSMUSG00000105686.1) lincRNA-TTS (ENSMUSG00000105686.1) 6065 ENSMUSG00000105686.1 ENSMUSG00000105686 ENSMUST00000196434 Gm35394 lincRNA Interval_15228 chr10 43510061 43512035 + 0 NA TTS (ENSMUSG00000038214.15) protein_coding-TTS (ENSMUSG00000038214.15) -7523 ENSMUSG00000111368.1 ENSMUSG00000111368 ENSMUST00000216546 Gm47889 lincRNA Interval_11085 chr1 179242990 179243244 + 0 NA intron (ENSMUSG00000055067.15, intron 1 of 8) protein_coding-intron (ENSMUSG00000055067.15, intron 1 of 8) 274888 ENSMUSG00000055067.15 ENSMUSG00000055067 ENSMUST00000194237 Smyd3 protein_coding Interval_29417 chr11 83858977 83860006 + 0 NA intron (ENSMUSG00000020679.11, intron 2 of 3) protein_coding-intron (ENSMUSG00000020679.11, intron 2 of 8) 7249 ENSMUSG00000020679.11 ENSMUSG00000020679 ENSMUST00000108113 Hnf1b protein_coding Interval_147551 chr7 68235964 68236161 + 0 NA TTS (ENSMUSG00000030553.3) protein_coding-TTS (ENSMUSG00000030553.3) 24224 ENSMUSG00000005533.10 ENSMUSG00000005533 ENSMUST00000208871 Igf1r protein_coding Interval_9402 chr1 156838577 156839080 + 0 NA promoter-TSS (ENSMUSG00000033544.6) protein_coding-promoter-TSS (ENSMUSG00000033544.6) -114 ENSMUSG00000033544.6 ENSMUSG00000033544 ENSMUST00000111720 Angptl1 protein_coding Interval_115207 chr4 94447954 94448201 + 0 NA Intergenic Intergenic -13593 ENSMUSG00000088295.1 ENSMUSG00000088295 ENSMUST00000157670 Gm26410 misc_RNA Interval_149578 chr7 99813401 99814191 + 0 NA exon (ENSMUSG00000035239.6, exon 3 of 3) protein_coding-exon (ENSMUSG00000035239.6, exon 3 of 3) 14621 ENSMUSG00000035239.6 ENSMUSG00000035239 ENSMUST00000036331 Neu3 protein_coding Interval_68166 chr16 66142634 66143020 + 0 NA Intergenic Intergenic -111959 ENSMUSG00000095506.1 ENSMUSG00000095506 ENSMUST00000179254 Gm22448 snRNA Interval_101727 chr3 9188724 9188931 + 0 NA Intergenic Intergenic -61775 ENSMUSG00000069114.8 ENSMUSG00000069114 ENSMUST00000155203 Zbtb10 protein_coding Interval_66232 chr16 32471004 32471210 + 0 NA TTS (ENSMUSG00000005615.15) protein_coding-TTS (ENSMUSG00000005615.15) 8167 ENSMUSG00000005615.15 ENSMUSG00000005615 ENSMUST00000231920 Pcyt1a protein_coding Interval_7183 chr1 127537295 127537772 + 0 NA promoter-TSS (ENSMUSG00000026347.13) protein_coding-promoter-TSS (ENSMUSG00000026347.13) 130757 ENSMUSG00000103390.1 ENSMUSG00000103390 ENSMUST00000195573 Gm38301 TEC Interval_104745 chr3 70103715 70105127 + 0 NA Intergenic Intergenic 12111 ENSMUSG00000103113.1 ENSMUSG00000103113 ENSMUST00000195440 Gm37585 processed_pseudogene Interval_121602 chr5 3808641 3808889 + 0 NA intron (ENSMUSG00000000600.15, intron 3 of 17) protein_coding-intron (ENSMUSG00000000600.15, intron 3 of 16) 5576 ENSMUSG00000000600.15 ENSMUSG00000000600 ENSMUST00000200004 Krit1 protein_coding Interval_85765 chr19 30557959 30558902 + 0 NA Intergenic Intergenic -8765 ENSMUSG00000024868.8 ENSMUSG00000024868 ENSMUST00000025803 Dkk1 protein_coding Interval_86550 chr19 41644822 41645039 + 0 NA intron (ENSMUSG00000025020.11, intron 13 of 35) protein_coding-intron (ENSMUSG00000025020.11, intron 13 of 36) 56279 ENSMUSG00000098286.1 ENSMUSG00000098286 ENSMUST00000183602 Mir8091 miRNA Interval_109523 chr3 143863214 143863547 + 0 NA Intergenic Intergenic -9615 ENSMUSG00000105492.1 ENSMUSG00000105492 ENSMUST00000200413 Gm2505 processed_pseudogene Interval_92589 chr2 60913003 60914014 + 0 NA intron (ENSMUSG00000026970.16, intron 1 of 13) protein_coding-intron (ENSMUSG00000026970.16, intron 1 of 13) -32070 ENSMUSG00000026970.16 ENSMUSG00000026970 ENSMUST00000128866 Rbms1 protein_coding Interval_159089 chr8 90223685 90224914 + 0 NA Intergenic Intergenic 123832 ENSMUSG00000043668.13 ENSMUSG00000043668 ENSMUST00000176034 Tox3 protein_coding Interval_63574 chr15 102135695 102136709 + 0 NA promoter-TSS (ENSMUSG00000036966.15) protein_coding-promoter-TSS (ENSMUSG00000036966.15) -5300 ENSMUSG00000036966.15 ENSMUSG00000036966 ENSMUST00000156475 Spryd3 protein_coding Interval_121426 chr4 155720940 155722448 + 0 NA intron (ENSMUSG00000029038.9, intron 2 of 3) protein_coding-intron (ENSMUSG00000029038.9, intron 2 of 4) -1553 ENSMUSG00000064916.1 ENSMUSG00000064916 ENSMUST00000082982 Gm22573 snRNA Interval_30505 chr11 94813959 94814342 + 0 NA promoter-TSS (ENSMUSG00000081478.1) unprocessed_pseudogene-promoter-TSS (ENSMUSG00000081478.1) -802 ENSMUSG00000081478.1 ENSMUSG00000081478 ENSMUST00000121794 AA623943 unprocessed_pseudogene Interval_94918 chr2 101722467 101723776 + 0 NA intron (ENSMUSG00000032841.15, intron 8 of 8) protein_coding-intron (ENSMUSG00000032841.15, intron 8 of 8) 38906 ENSMUSG00000027164.8 ENSMUSG00000027164 ENSMUST00000144063 Traf6 protein_coding Interval_157094 chr8 65102027 65102234 + 0 NA intron (ENSMUSG00000074300.4, intron 2 of 2) protein_coding-intron (ENSMUSG00000074300.4, intron 2 of 2) -8087 ENSMUSG00000109620.1 ENSMUSG00000109620 ENSMUST00000211412 Gm48810 processed_pseudogene Interval_165559 chr9 49488992 49489401 + 0 NA Intergenic Intergenic -2981 ENSMUSG00000040219.4 ENSMUSG00000040219 ENSMUST00000146666 Ttc12 protein_coding Interval_90393 chr2 30151221 30153206 + 0 NA TTS (ENSMUSG00000039678.12) protein_coding-TTS (ENSMUSG00000039678.12) -7185 ENSMUSG00000085401.2 ENSMUSG00000085401 ENSMUST00000120862 Slc39a1-ps processed_pseudogene Interval_44655 chr13 46960605 46960817 + 0 NA Intergenic Intergenic -15018 ENSMUSG00000114449.1 ENSMUSG00000114449 ENSMUST00000224563 Gm48325 processed_pseudogene Interval_37914 chr12 73024782 73025045 + 0 NA Intergenic Intergenic 17902 ENSMUSG00000051367.8 ENSMUSG00000051367 ENSMUST00000175677 Six1 protein_coding Interval_93864 chr2 77713655 77714664 + 0 NA intron (ENSMUSG00000027016.17, intron 3 of 3) protein_coding-intron (ENSMUSG00000027016.17, intron 1 of 7) -10887 ENSMUSG00000027016.17 ENSMUSG00000027016 ENSMUST00000129077 Zfp385b protein_coding Interval_88046 chr19 58364228 58364865 + 0 NA intron (ENSMUSG00000025089.15, intron 3 of 8) protein_coding-intron (ENSMUSG00000025089.15, intron 5 of 10) 89920 ENSMUSG00000025089.15 ENSMUSG00000025089 ENSMUST00000135730 Gfra1 protein_coding Interval_124288 chr5 43634291 43634946 + 0 NA Intergenic Intergenic -32887 ENSMUSG00000087290.2 ENSMUSG00000087290 ENSMUST00000152116 Gm15866 antisense Interval_51567 chr14 30331155 30332595 + 0 NA intron (ENSMUSG00000015968.18, intron 3 of 40) protein_coding-intron (ENSMUSG00000015968.18, intron 3 of 48) 52479 ENSMUSG00000114670.1 ENSMUSG00000114670 ENSMUST00000224661 Gm18072 processed_pseudogene Interval_145751 chr7 38041008 38041526 + 0 NA Intergenic Intergenic -17716 ENSMUSG00000030421.9 ENSMUSG00000030421 ENSMUST00000206169 Uri1 protein_coding Interval_118998 chr4 134922856 134924609 + 0 NA promoter-TSS (ENSMUSG00000037266.18) protein_coding-promoter-TSS (ENSMUSG00000037266.18) -728 ENSMUSG00000037266.18 ENSMUSG00000037266 ENSMUST00000149003 Rsrp1 protein_coding Interval_57534 chr15 12147096 12148125 + 0 NA intron (ENSMUSG00000022201.16, intron 6 of 6) protein_coding-intron (ENSMUSG00000022201.16, intron 6 of 19) 10831 ENSMUSG00000089250.1 ENSMUSG00000089250 ENSMUST00000158625 Gm25713 snRNA Interval_38956 chr12 84089751 84089938 + 0 NA Intergenic Intergenic -2203 ENSMUSG00000044515.5 ENSMUSG00000044515 ENSMUST00000058999 Gm8385 processed_pseudogene Interval_136784 chr6 60217522 60218327 + 0 NA Intergenic Intergenic -32868 ENSMUSG00000064515.1 ENSMUSG00000064515 ENSMUST00000082581 n-R5s162 rRNA Interval_159841 chr8 104250733 104251767 + 0 NA intron (ENSMUSG00000054400.16, intron 1 of 2) protein_coding-intron (ENSMUSG00000054400.16, intron 1 of 3) 306 ENSMUSG00000054400.16 ENSMUSG00000054400 ENSMUST00000212259 Cklf protein_coding Interval_25671 chr11 50667815 50668175 + 0 NA exon (ENSMUSG00000036545.9, exon 3 of 22) protein_coding-exon (ENSMUSG00000036545.9, exon 3 of 22) 50920 ENSMUSG00000087080.1 ENSMUSG00000087080 ENSMUST00000137567 Gm12199 antisense Interval_47908 chr13 94312453 94313191 + 0 NA Intergenic Intergenic -12963 ENSMUSG00000114056.1 ENSMUSG00000114056 ENSMUST00000220897 Gm5668 processed_pseudogene Interval_94280 chr2 87437662 87438384 + 0 NA Intergenic Intergenic 7748 ENSMUSG00000050772.2 ENSMUSG00000050772 ENSMUST00000062494 Olfr1124 protein_coding Interval_138525 chr6 88906438 88907191 + 0 NA TTS (ENSMUSG00000002871.14) protein_coding-TTS (ENSMUSG00000002871.14) 4481 ENSMUSG00000002871.14 ENSMUSG00000002871 ENSMUST00000203155 Tpra1 protein_coding Interval_117461 chr4 123891279 123891863 + 0 NA Intergenic Intergenic -10851 ENSMUSG00000080993.1 ENSMUSG00000080993 ENSMUST00000121015 Gm12903 processed_pseudogene Interval_101174 chr2 178850012 178851051 + 0 NA Intergenic Intergenic 170602 ENSMUSG00000082215.3 ENSMUSG00000082215 ENSMUST00000118225 Gm14314 processed_pseudogene Interval_133428 chr6 4977517 4977743 + 0 NA intron (ENSMUSG00000032827.15, intron 1 of 17) protein_coding-intron (ENSMUSG00000032827.15, intron 2 of 15) 18647 ENSMUSG00000097396.1 ENSMUSG00000097396 ENSMUST00000180645 Gm26556 TEC Interval_161851 chr8 123196910 123197727 + 0 NA intron (ENSMUSG00000019278.5, intron 2 of 5) protein_coding-intron (ENSMUSG00000019278.5, intron 2 of 10) 3824 ENSMUSG00000019278.5 ENSMUSG00000019278 ENSMUST00000212409 Dpep1 protein_coding Interval_27550 chr11 68617640 68618319 + 0 NA Intergenic Intergenic 30958 ENSMUSG00000045915.15 ENSMUSG00000045915 ENSMUST00000102612 Ccdc42 protein_coding Interval_85098 chr19 22815457 22815759 + 0 NA intron (ENSMUSG00000052387.16, intron 8 of 24) protein_coding-intron (ENSMUSG00000052387.16, intron 8 of 26) 65003 ENSMUSG00000065507.3 ENSMUSG00000065507 ENSMUST00000083573 Mir204 miRNA Interval_143357 chr7 6098658 6099123 + 0 NA exon (ENSMUSG00000034690.13, exon 8 of 10) protein_coding-exon (ENSMUSG00000034690.13, exon 8 of 10) -37540 ENSMUSG00000108923.1 ENSMUSG00000108923 ENSMUST00000208973 4933431C10Rik TEC Interval_49298 chr13 110406219 110406771 + 0 NA Intergenic Intergenic 10483 ENSMUSG00000021701.8 ENSMUSG00000021701 ENSMUST00000225156 Plk2 protein_coding Interval_101188 chr2 179183433 179183621 + 0 NA Intergenic Intergenic 6102 ENSMUSG00000061897.5 ENSMUSG00000061897 ENSMUST00000118761 Gm14292 processed_pseudogene Interval_165153 chr9 44866635 44867048 + 0 NA intron (ENSMUSG00000002028.13, intron 1 of 3) protein_coding-intron (ENSMUSG00000002028.13, intron 1 of 35) -7666 ENSMUSG00000111017.1 ENSMUSG00000111017 ENSMUST00000213541 Gm48314 TEC Interval_94097 chr2 83898865 83899147 + 0 NA Intergenic Intergenic 24673 ENSMUSG00000034552.8 ENSMUSG00000034552 ENSMUST00000155127 Zswim2 protein_coding Interval_148338 chr7 80592399 80592679 + 0 NA TTS (ENSMUSG00000030527.15) protein_coding-TTS (ENSMUSG00000030527.15) 11244 ENSMUSG00000108643.1 ENSMUSG00000108643 ENSMUST00000206056 Gm44931 TEC Interval_120629 chr4 149773552 149774586 + 0 NA exon (ENSMUSG00000028982.9, exon 1 of 7) protein_coding-exon (ENSMUSG00000028982.9, exon 1 of 7) 208 ENSMUSG00000028982.9 ENSMUSG00000028982 ENSMUST00000105686 Slc25a33 protein_coding Interval_133851 chr6 13399894 13400265 + 0 NA Intergenic Intergenic -13258 ENSMUSG00000101894.1 ENSMUSG00000101894 ENSMUST00000186770 1700016P04Rik lincRNA Interval_79649 chr18 34242488 34242712 + 0 NA intron (ENSMUSG00000005871.15, intron 1 of 13) protein_coding-intron (ENSMUSG00000005871.15, intron 1 of 15) 21676 ENSMUSG00000005871.15 ENSMUSG00000005871 ENSMUST00000167136 Apc protein_coding Interval_137803 chr6 82652225 82653486 + 0 NA promoter-TSS (ENSMUSG00000030042.15) protein_coding-promoter-TSS (ENSMUSG00000030042.15) -27277 ENSMUSG00000107453.1 ENSMUSG00000107453 ENSMUST00000203711 Gm44145 antisense Interval_9765 chr1 161958022 161958728 + 0 NA intron (ENSMUSG00000086277.2, intron 3 of 6) protein_coding-intron (ENSMUSG00000086277.2, intron 3 of 6) -10825 ENSMUSG00000103393.1 ENSMUSG00000103393 ENSMUST00000161826 Gm38304 antisense Interval_26325 chr11 56169639 56169929 + 0 NA Intergenic Intergenic 93299 ENSMUSG00000084169.1 ENSMUSG00000084169 ENSMUST00000120178 Gm12240 processed_pseudogene Interval_168730 chr9 86490913 86492192 + 0 NA intron (ENSMUSG00000034973.16, intron 4 of 37) protein_coding-intron (ENSMUSG00000034973.16, intron 3 of 36) 24398 ENSMUSG00000034973.16 ENSMUSG00000034973 ENSMUST00000187427 Dop1a protein_coding Interval_48804 chr13 103463952 103464173 + 0 NA Intergenic Intergenic -42980 ENSMUSG00000087860.1 ENSMUSG00000087860 ENSMUST00000157235 Gm24441 misc_RNA Interval_89984 chr2 27061478 27061985 + 0 NA TTS (ENSMUSG00000009214.9) protein_coding-TTS (ENSMUSG00000009214.9) 6137 ENSMUSG00000009214.9 ENSMUSG00000009214 ENSMUST00000163967 Mymk protein_coding Interval_41525 chr12 115970478 115970687 + 0 NA Intergenic Intergenic -6332 ENSMUSG00000105757.1 ENSMUSG00000105757 ENSMUST00000199643 Ighv1-83 IG_V_pseudogene Interval_34847 chr12 12655232 12655712 + 0 NA Intergenic Intergenic 14445 ENSMUSG00000118614.1 ENSMUSG00000118614 ENSMUST00000239228 AC107703.1 lincRNA Interval_100264 chr2 168049146 168051095 + 0 NA Intergenic Intergenic 14777 ENSMUSG00000092849.1 ENSMUSG00000092849 ENSMUST00000175108 Gm24327 miRNA Interval_109030 chr3 135272083 135272644 + 0 NA intron (ENSMUSG00000045328.11, intron 45 of 45) protein_coding-intron (ENSMUSG00000045328.11, intron 45 of 45) -8920 ENSMUSG00000028167.15 ENSMUSG00000028167 ENSMUST00000154869 Bdh2 protein_coding Interval_93961 chr2 80172363 80172712 + 0 NA Intergenic Intergenic 40607 ENSMUSG00000083519.1 ENSMUSG00000083519 ENSMUST00000121276 Gm13674 processed_pseudogene Interval_75627 chr17 69483488 69483867 + 0 NA intron (ENSMUSG00000091636.2, intron 1 of 1) protein_coding-intron (ENSMUSG00000091636.2, intron 1 of 1) -7802 ENSMUSG00000117053.1 ENSMUSG00000117053 ENSMUST00000232967 A730049N16Rik antisense Interval_139337 chr6 99079114 99079519 + 0 NA intron (ENSMUSG00000030067.17, intron 1 of 15) protein_coding-intron (ENSMUSG00000030067.17, intron 1 of 15) -3259 ENSMUSG00000105902.1 ENSMUSG00000105902 ENSMUST00000200105 Gm49348 miRNA Interval_85223 chr19 23961531 23962285 + 0 NA Intergenic Intergenic 14527 ENSMUSG00000071604.5 ENSMUSG00000071604 ENSMUST00000236123 Fam189a2 protein_coding Interval_157633 chr8 71917195 71917593 + 0 NA exon (ENSMUSG00000083718.2, exon 1 of 1) transcribed_processed_pseudogene-exon (ENSMUSG00000083718.2, exon 1 of 1) 1457 ENSMUSG00000083718.2 ENSMUSG00000083718 ENSMUST00000118290 Ccnb2-ps transcribed_processed_pseudogene Interval_84457 chr19 11130647 11130890 + 0 NA exon (ENSMUSG00000024729.7, exon 1 of 7) protein_coding-exon (ENSMUSG00000024729.7, exon 1 of 7) 9258 ENSMUSG00000099998.1 ENSMUSG00000099998 ENSMUST00000187178 Gm6501 processed_pseudogene Interval_106006 chr3 90573121 90573334 + 0 NA intron (ENSMUSG00000094018.2, intron 2 of 3) protein_coding-intron (ENSMUSG00000094018.2, intron 1 of 1) -11432 ENSMUSG00000001021.13 ENSMUSG00000001021 ENSMUST00000196635 S100a3 protein_coding Interval_67226 chr16 44557557 44559178 + 0 NA promoter-TSS (ENSMUSG00000093046.1) miRNA-promoter-TSS (ENSMUSG00000093046.1) -238 ENSMUSG00000093046.1 ENSMUSG00000093046 ENSMUST00000175305 Mir3081 miRNA Interval_10615 chr1 172237351 172237788 + 0 NA intron (ENSMUSG00000103617.1, intron 1 of 1) protein_coding-intron (ENSMUSG00000007107.6, intron 13 of 22) 278 ENSMUSG00000103617.1 ENSMUSG00000103617 ENSMUST00000191616 Gm37950 antisense Interval_26725 chr11 60027117 60027780 + 0 NA intron (ENSMUSG00000000301.16, intron 1 of 3) protein_coding-intron (ENSMUSG00000000301.16, intron 2 of 6) -55938 ENSMUSG00000000301.16 ENSMUSG00000000301 ENSMUST00000133028 Pemt protein_coding Interval_96664 chr2 126996719 126998745 + 0 NA Intergenic Intergenic -11022 ENSMUSG00000001998.15 ENSMUSG00000001998 ENSMUST00000142740 Ap4e1 protein_coding Interval_63165 chr15 99489111 99489727 + 0 NA Intergenic Intergenic 2805 ENSMUSG00000115863.1 ENSMUSG00000115863 ENSMUST00000229161 Gm49485 processed_pseudogene Interval_147864 chr7 74440183 74440503 + 0 NA intron (ENSMUSG00000025790.14, intron 1 of 1) protein_coding-intron (ENSMUSG00000025790.14, intron 2 of 9) 47645 ENSMUSG00000085161.1 ENSMUSG00000085161 ENSMUST00000132826 Gm7580 antisense Interval_20370 chr10 117152334 117152592 + 0 NA Intergenic Intergenic -3968 ENSMUSG00000020170.4 ENSMUSG00000020170 ENSMUST00000219104 Frs2 protein_coding Interval_141907 chr6 135267210 135267485 + 0 NA Intergenic Intergenic -13021 ENSMUSG00000030206.13 ENSMUSG00000030206 ENSMUST00000111910 Gsg1 protein_coding Interval_104643 chr3 69044075 69045865 + 0 NA promoter-TSS (ENSMUSG00000034317.14) protein_coding-promoter-TSS (ENSMUSG00000034317.14) -247 ENSMUSG00000034317.14 ENSMUSG00000034317 ENSMUST00000153259 Trim59 protein_coding Interval_118549 chr4 132439021 132440140 + 0 NA Intergenic Intergenic -2454 ENSMUSG00000064739.1 ENSMUSG00000064739 ENSMUST00000082805 Gm23055 snRNA Interval_23541 chr11 23271576 23273193 + 0 NA intron (ENSMUSG00000020290.14, intron 5 of 12) protein_coding-intron (ENSMUSG00000020290.14, intron 5 of 25) -12260 ENSMUSG00000020290.14 ENSMUSG00000020290 ENSMUST00000150750 Xpo1 protein_coding Interval_71670 chr17 25281765 25282652 + 0 NA Intergenic Intergenic -16186 ENSMUSG00000056399.2 ENSMUSG00000056399 ENSMUST00000037453 Prss34 protein_coding Interval_86820 chr19 44089672 44089970 + 0 NA intron (ENSMUSG00000025199.16, intron 10 of 15) protein_coding-intron (ENSMUSG00000025199.16, intron 10 of 20) -13917 ENSMUSG00000025199.16 ENSMUSG00000025199 ENSMUST00000146861 Chuk protein_coding Interval_51027 chr14 21662314 21662947 + 0 NA intron (ENSMUSG00000021767.19, intron 14 of 15) protein_coding-intron (ENSMUSG00000021767.19, intron 15 of 16) 40472 ENSMUSG00000063821.6 ENSMUSG00000063821 ENSMUST00000224735 Dupd1 protein_coding Interval_87755 chr19 55656012 55656256 + 0 NA Intergenic Intergenic -86130 ENSMUSG00000024985.20 ENSMUSG00000024985 ENSMUST00000148666 Tcf7l2 protein_coding Interval_7327 chr1 129097940 129098266 + 0 NA Intergenic Intergenic -185004 ENSMUSG00000103742.1 ENSMUSG00000103742 ENSMUST00000195110 Gm38240 TEC Interval_156914 chr8 61631992 61633246 + 0 NA intron (ENSMUSG00000058056.16, intron 10 of 21) protein_coding-intron (ENSMUSG00000058056.16, intron 10 of 19) -116719 ENSMUSG00000058056.16 ENSMUSG00000058056 ENSMUST00000123523 Palld protein_coding Interval_153616 chr8 3851615 3852061 + 0 NA intron (ENSMUSG00000040197.4, intron 4 of 5) protein_coding-intron (ENSMUSG00000040197.4, intron 4 of 5) 2471 ENSMUSG00000040197.4 ENSMUSG00000040197 ENSMUST00000033888 Cd209e protein_coding Interval_68919 chr16 88714701 88715030 + 0 NA Intergenic Intergenic -6903 ENSMUSG00000050704.3 ENSMUSG00000050704 ENSMUST00000050882 2310061N02Rik protein_coding Interval_86725 chr19 43350274 43350688 + 0 NA intron (ENSMUSG00000074852.4, intron 1 of 1) protein_coding-intron (ENSMUSG00000074852.4, intron 2 of 11) 69683 ENSMUSG00000047509.1 ENSMUSG00000047509 ENSMUST00000057752 Gm6776 processed_pseudogene Interval_33974 chr11 119775034 119775624 + 0 NA intron (ENSMUSG00000025583.15, intron 6 of 32) protein_coding-intron (ENSMUSG00000025583.15, intron 6 of 33) 28928 ENSMUSG00000088670.1 ENSMUSG00000088670 ENSMUST00000158045 Gm23663 snoRNA Interval_6919 chr1 120685721 120686557 + 0 NA intron (ENSMUSG00000099957.4, intron 4 of 6) lincRNA-intron (ENSMUSG00000099957.4, intron 4 of 6) 64399 ENSMUSG00000099957.4 ENSMUSG00000099957 ENSMUST00000186982 2610027F03Rik lincRNA Interval_156117 chr8 44945682 44945942 + 0 NA intron (ENSMUSG00000070047.14, intron 1 of 26) protein_coding-intron (ENSMUSG00000070047.14, intron 1 of 26) -4402 ENSMUSG00000070047.14 ENSMUSG00000070047 ENSMUST00000189367 Fat1 protein_coding Interval_155503 chr8 33961276 33961891 + 0 NA Intergenic Intergenic -24331 ENSMUSG00000110663.1 ENSMUSG00000110663 ENSMUST00000212322 Gm39157 lincRNA Interval_65418 chr16 22230435 22231194 + 0 NA exon (ENSMUSG00000043870.9, exon 1 of 1) processed_pseudogene-exon (ENSMUSG00000043870.9, exon 1 of 1) 423 ENSMUSG00000043870.9 ENSMUSG00000043870 ENSMUST00000121854 Gm5809 processed_pseudogene Interval_111934 chr4 32668093 32668540 + 0 NA intron (ENSMUSG00000058006.12, intron 5 of 101) protein_coding-intron (ENSMUSG00000058006.12, intron 5 of 101) 11197 ENSMUSG00000058006.12 ENSMUSG00000058006 ENSMUST00000124361 Mdn1 protein_coding Interval_174377 chrX 150745282 150745592 + 0 NA Intergenic Intergenic -37822 ENSMUSG00000082961.1 ENSMUSG00000082961 ENSMUST00000119124 Gm15131 processed_pseudogene Interval_84402 chr19 10643956 10644671 + 0 NA intron (ENSMUSG00000043789.8, intron 6 of 19) protein_coding-intron (ENSMUSG00000043789.8, intron 6 of 19) 3740 ENSMUSG00000118392.1 ENSMUSG00000118392 ENSMUST00000236337 4930524O05Rik antisense Interval_151020 chr7 117845911 117846146 + 0 NA Intergenic Intergenic 69234 ENSMUSG00000088116.1 ENSMUSG00000088116 ENSMUST00000157491 Gm24063 miRNA Interval_41627 chr12 117172662 117174591 + 0 NA intron (ENSMUSG00000056553.14, intron 13 of 22) protein_coding-intron (ENSMUSG00000056553.14, intron 13 of 22) -22411 ENSMUSG00000099907.1 ENSMUSG00000099907 ENSMUST00000186114 Gm10421 processed_transcript Interval_12966 chr10 8801016 8801927 + 0 NA intron (ENSMUSG00000015305.6, intron 4 of 19) protein_coding-intron (ENSMUSG00000015305.6, intron 4 of 19) 22676 ENSMUSG00000065692.1 ENSMUSG00000065692 ENSMUST00000083758 Gm25410 snoRNA Interval_63171 chr15 99532305 99532713 + 0 NA Intergenic Intergenic -21832 ENSMUSG00000023011.8 ENSMUSG00000023011 ENSMUST00000230603 Faim2 protein_coding Interval_166726 chr9 62292379 62292748 + 0 NA Intergenic Intergenic -5939 ENSMUSG00000111193.1 ENSMUSG00000111193 ENSMUST00000216565 Gm35288 lincRNA Interval_24325 chr11 32383765 32384569 + 0 NA intron (ENSMUSG00000040711.8, intron 3 of 13) protein_coding-intron (ENSMUSG00000040711.8, intron 3 of 12) 36347 ENSMUSG00000040711.8 ENSMUSG00000040711 ENSMUST00000138771 Sh3pxd2b protein_coding Interval_104971 chr3 79418424 79419338 + 0 NA intron (ENSMUSG00000091685.6, intron 2 of 3) protein_coding-intron (ENSMUSG00000091685.6, intron 2 of 4) 73502 ENSMUSG00000091685.6 ENSMUSG00000091685 ENSMUST00000199658 Gm17359 protein_coding Interval_18636 chr10 88730550 88732587 + 0 NA promoter-TSS (ENSMUSG00000060904.14) protein_coding-promoter-TSS (ENSMUSG00000060904.14) -467 ENSMUSG00000069540.4 ENSMUSG00000069540 ENSMUST00000092231 Gm4925 transcribed_processed_pseudogene Interval_174605 chrX 159943431 159943650 + 0 NA intron (ENSMUSG00000040990.17, intron 2 of 5) protein_coding-intron (ENSMUSG00000040990.17, intron 15 of 19) 23681 ENSMUSG00000040990.17 ENSMUSG00000040990 ENSMUST00000130987 Sh3kbp1 protein_coding Interval_84776 chr19 16562655 16563299 + 0 NA intron (ENSMUSG00000024697.4, intron 2 of 6) protein_coding-intron (ENSMUSG00000024697.4, intron 2 of 6) 9491 ENSMUSG00000118023.1 ENSMUSG00000118023 ENSMUST00000237942 Gm50363 processed_pseudogene Interval_103832 chr3 53491658 53492191 + 0 NA intron (ENSMUSG00000027744.4, intron 1 of 2) protein_coding-intron (ENSMUSG00000027744.4, intron 1 of 6) 3271 ENSMUSG00000027744.4 ENSMUSG00000027744 ENSMUST00000029307 Stoml3 protein_coding Interval_34856 chr12 12752184 12752445 + 0 NA Intergenic Intergenic 29453 ENSMUSG00000113009.1 ENSMUSG00000113009 ENSMUST00000222770 3732407C23Rik TEC Interval_128298 chr5 112385860 112386436 + 0 NA intron (ENSMUSG00000029348.11, intron 2 of 2) protein_coding-intron (ENSMUSG00000029348.11, intron 2 of 2) 7876 ENSMUSG00000029348.11 ENSMUSG00000029348 ENSMUST00000199095 Asphd2 protein_coding Interval_12394 chr1 192897118 192897321 + 0 NA TTS (ENSMUSG00000016200.14) protein_coding-TTS (ENSMUSG00000016200.14) 8648 ENSMUSG00000102162.1 ENSMUSG00000102162 ENSMUST00000192374 Gm2367 processed_pseudogene Interval_34715 chr12 8889407 8889674 + 0 NA intron (ENSMUSG00000042976.6, intron 1 of 2) lincRNA-intron (ENSMUSG00000042976.6, intron 1 of 2) -12158 ENSMUSG00000042976.6 ENSMUSG00000042976 ENSMUST00000218928 9930038B18Rik lincRNA Interval_65692 chr16 25483562 25483913 + 0 NA Intergenic Intergenic -40464 ENSMUSG00000116828.1 ENSMUSG00000116828 ENSMUST00000232460 Gm18896 processed_pseudogene Interval_19495 chr10 100449364 100449586 + 0 NA intron (ENSMUSG00000036676.14, intron 12 of 12) protein_coding-intron (ENSMUSG00000036676.14, intron 12 of 13) -15906 ENSMUSG00000112580.1 ENSMUSG00000112580 ENSMUST00000220387 Gm47673 TEC Interval_130543 chr5 128700588 128701368 + 0 NA Intergenic Intergenic -1546 ENSMUSG00000029423.10 ENSMUSG00000029423 ENSMUST00000195959 Piwil1 protein_coding Interval_165812 chr9 53361977 53362996 + 0 NA intron (ENSMUSG00000034584.3, intron 2 of 2) protein_coding-intron (ENSMUSG00000034584.3, intron 4 of 5) 21297 ENSMUSG00000034584.3 ENSMUSG00000034584 ENSMUST00000139096 Exph5 protein_coding Interval_146836 chr7 52855549 52856449 + 0 NA Intergenic Intergenic -71071 ENSMUSG00000070203.1 ENSMUSG00000070203 ENSMUST00000093693 Gm22444 snRNA Interval_96703 chr2 127285576 127286365 + 0 NA TTS (ENSMUSG00000027367.16) protein_coding-TTS (ENSMUSG00000027367.16) -6141 ENSMUSG00000027367.16 ENSMUSG00000027367 ENSMUST00000154549 Stard7 protein_coding Interval_111661 chr4 25432153 25432449 + 0 NA Intergenic Intergenic 12952 ENSMUSG00000082451.1 ENSMUSG00000082451 ENSMUST00000121579 Gm11894 processed_pseudogene Interval_91982 chr2 52132726 52133765 + 0 NA Intergenic Intergenic 21112 ENSMUSG00000036202.16 ENSMUSG00000036202 ENSMUST00000152178 Rif1 protein_coding Interval_64299 chr16 10327747 10328403 + 0 NA TTS (ENSMUSG00000116270.1) lincRNA-TTS (ENSMUSG00000116270.1) 3210 ENSMUSG00000116270.1 ENSMUSG00000116270 ENSMUST00000229862 Gm1600 lincRNA Interval_15962 chr10 59702062 59703112 + 0 NA promoter-TSS (ENSMUSG00000020111.15) protein_coding-promoter-TSS (ENSMUSG00000020111.15) -31 ENSMUSG00000020111.15 ENSMUSG00000020111 ENSMUST00000166565 Micu1 protein_coding Interval_33713 chr11 118034285 118035589 + 0 NA intron (ENSMUSG00000033987.16, intron 72 of 80) protein_coding-intron (ENSMUSG00000033987.16, intron 72 of 80) 22594 ENSMUSG00000017715.11 ENSMUSG00000017715 ENSMUST00000155507 Pgs1 protein_coding Interval_162233 chr8 126297421 126299288 + 0 NA promoter-TSS (ENSMUSG00000057060.8) protein_coding-promoter-TSS (ENSMUSG00000057060.8) -124174 ENSMUSG00000051671.7 ENSMUSG00000051671 ENSMUST00000211868 Coa6 protein_coding Interval_106068 chr3 92316453 92316829 + 0 NA promoter-TSS (ENSMUSG00000050092.3) protein_coding-promoter-TSS (ENSMUSG00000050092.3) 21 ENSMUSG00000050092.3 ENSMUSG00000050092 ENSMUST00000061038 Sprr2b protein_coding Interval_32221 chr11 106251533 106252198 + 0 NA intron (ENSMUSG00000020706.13, intron 2 of 2) protein_coding-intron (ENSMUSG00000020706.13, intron 13 of 20) 689 ENSMUSG00000020706.13 ENSMUSG00000020706 ENSMUST00000143884 Ftsj3 protein_coding Interval_55834 chr14 101294826 101295770 + 0 NA Intergenic Intergenic 12231 ENSMUSG00000089041.1 ENSMUSG00000089041 ENSMUST00000158416 Gm26173 snoRNA Interval_99178 chr2 157818093 157819703 + 0 NA intron (ENSMUSG00000027649.15, intron 7 of 8) protein_coding-intron (ENSMUSG00000027649.15, intron 9 of 15) 29034 ENSMUSG00000027649.15 ENSMUSG00000027649 ENSMUST00000156300 Ctnnbl1 protein_coding Interval_64020 chr16 5377326 5377589 + 0 NA intron (ENSMUSG00000116029.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000116029.1, intron 1 of 2) -53300 ENSMUSG00000084573.1 ENSMUSG00000084573 ENSMUST00000122624 n-R5s30 rRNA Interval_37852 chr12 72541498 72541990 + 0 NA exon (ENSMUSG00000034501.7, exon 2 of 11) protein_coding-exon (ENSMUSG00000034501.7, exon 2 of 11) 5361 ENSMUSG00000034501.7 ENSMUSG00000034501 ENSMUST00000044352 Pcnx4 protein_coding Interval_173660 chrX 101622586 101623245 + 0 NA Intergenic Intergenic -17225 ENSMUSG00000034160.13 ENSMUSG00000034160 ENSMUST00000147635 Ogt protein_coding Interval_115231 chr4 94669375 94670127 + 0 NA intron (ENSMUSG00000028576.12, intron 13 of 19) protein_coding-intron (ENSMUSG00000028576.12, intron 13 of 19) 4594 ENSMUSG00000077921.1 ENSMUSG00000077921 ENSMUST00000104728 Mir872 miRNA Interval_1440 chr1 23461587 23461830 + 0 NA Intergenic Intergenic -17831 ENSMUSG00000097920.1 ENSMUSG00000097920 ENSMUST00000180769 Gm7784 processed_pseudogene Interval_170127 chr9 105130983 105132279 + 0 NA promoter-TSS (ENSMUSG00000032565.9) protein_coding-promoter-TSS (ENSMUSG00000032565.9) 149 ENSMUSG00000032565.9 ENSMUSG00000032565 ENSMUST00000186925 Nudt16 protein_coding Interval_117150 chr4 120073225 120073447 + 0 NA intron (ENSMUSG00000115115.1, intron 1 of 1) protein_coding-intron (ENSMUSG00000028634.17, intron 3 of 8) 8340 ENSMUSG00000115115.1 ENSMUSG00000115115 ENSMUST00000226560 AL607142.1 protein_coding Interval_72174 chr17 28420566 28421318 + 0 NA intron (ENSMUSG00000024222.17, intron 1 of 6) protein_coding-intron (ENSMUSG00000024222.17, intron 5 of 10) 5488 ENSMUSG00000117313.1 ENSMUSG00000117313 ENSMUST00000233201 Gm49838 sense_intronic Interval_159115 chr8 90794871 90796037 + 0 NA Intergenic Intergenic -4507 ENSMUSG00000105321.1 ENSMUSG00000105321 ENSMUST00000198683 Gm44382 miRNA Interval_54990 chr14 76698579 76699525 + 0 NA Intergenic Intergenic 21398 ENSMUSG00000101009.6 ENSMUSG00000101009 ENSMUST00000191384 1700108F19Rik processed_transcript Interval_153852 chr8 9908593 9909133 + 0 NA intron (ENSMUSG00000095279.2, intron 2 of 5) lincRNA-intron (ENSMUSG00000095279.2, intron 2 of 5) 10600 ENSMUSG00000095279.2 ENSMUSG00000095279 ENSMUST00000179462 Gm10067 lincRNA Interval_27392 chr11 67253047 67253546 + 0 NA exon (ENSMUSG00000057003.12, exon 26 of 39) protein_coding-exon (ENSMUSG00000057003.12, exon 26 of 39) 12699 ENSMUSG00000057003.12 ENSMUSG00000057003 ENSMUST00000170942 Myh4 protein_coding Interval_114108 chr4 63480027 63480953 + 0 NA intron (ENSMUSG00000039137.18, intron 1 of 2) protein_coding-intron (ENSMUSG00000039137.18, intron 1 of 11) -47168 ENSMUSG00000039137.18 ENSMUSG00000039137 ENSMUST00000140720 Whrn protein_coding Interval_116238 chr4 108973162 108973607 + 0 NA Intergenic Intergenic -1307 ENSMUSG00000086483.1 ENSMUSG00000086483 ENSMUST00000140919 8030443G20Rik antisense Interval_103074 chr3 35060739 35060975 + 0 NA Intergenic Intergenic -138206 ENSMUSG00000098862.1 ENSMUSG00000098862 ENSMUST00000183357 Mir6378 miRNA Interval_23754 chr11 25913508 25913720 + 0 NA intron (ENSMUSG00000032985.15, intron 2 of 2) protein_coding-intron (ENSMUSG00000032985.15, intron 2 of 6) -144473 ENSMUSG00000032985.15 ENSMUSG00000032985 ENSMUST00000125987 5730522E02Rik protein_coding Interval_21112 chr10 126592072 126592318 + 0 NA Intergenic Intergenic -5391 ENSMUSG00000112435.1 ENSMUSG00000112435 ENSMUST00000220216 Gm47965 processed_pseudogene Interval_73234 chr17 35704013 35705274 + 0 NA promoter-TSS (ENSMUSG00000003534.17) protein_coding-promoter-TSS (ENSMUSG00000003534.17) 747 ENSMUSG00000086867.1 ENSMUSG00000086867 ENSMUST00000135203 Gm4577 antisense Interval_23612 chr11 23794177 23794353 + 0 NA Intergenic Intergenic -17218 ENSMUSG00000087741.1 ENSMUSG00000087741 ENSMUST00000157116 Gm23827 snRNA Interval_48847 chr13 104030013 104030424 + 0 NA intron (ENSMUSG00000021710.11, intron 2 of 2) protein_coding-intron (ENSMUSG00000021710.11, intron 12 of 12) 4355 ENSMUSG00000021710.11 ENSMUSG00000021710 ENSMUST00000224086 Nln protein_coding Interval_60219 chr15 68257694 68259350 + 0 NA intron (ENSMUSG00000022335.17, intron 1 of 13) protein_coding-intron (ENSMUSG00000022335.17, intron 1 of 4) 265 ENSMUSG00000022335.17 ENSMUSG00000022335 ENSMUST00000161139 Zfat protein_coding Interval_101418 chr2 181212281 181213700 + 0 NA exon (ENSMUSG00000027579.6, exon 1 of 8) protein_coding-exon (ENSMUSG00000027579.6, exon 1 of 8) 195 ENSMUSG00000027579.6 ENSMUSG00000027579 ENSMUST00000016498 Srms protein_coding Interval_68511 chr16 78296103 78296579 + 0 NA intron (ENSMUSG00000109841.2, intron 1 of 2) processed_transcript-intron (ENSMUSG00000109841.2, intron 1 of 2) -1354 ENSMUSG00000109841.2 ENSMUSG00000109841 ENSMUST00000210555 E330011O21Rik processed_transcript Interval_93979 chr2 80444195 80444525 + 0 NA intron (ENSMUSG00000027004.3, intron 1 of 5) protein_coding-intron (ENSMUSG00000027004.3, intron 1 of 5) -5730 ENSMUSG00000027004.3 ENSMUSG00000027004 ENSMUST00000142459 Frzb protein_coding Interval_138307 chr6 87069014 87069315 + 0 NA intron (ENSMUSG00000029992.14, intron 11 of 18) protein_coding-intron (ENSMUSG00000029992.14, intron 12 of 19) 26314 ENSMUSG00000029992.14 ENSMUSG00000029992 ENSMUST00000146410 Gfpt1 protein_coding Interval_27051 chr11 62568332 62568863 + 0 NA Intergenic Intergenic -2214 ENSMUSG00000085748.1 ENSMUSG00000085748 ENSMUST00000155836 Gm12280 antisense Interval_54210 chr14 66296406 66297773 + 0 NA promoter-TSS (ENSMUSG00000022043.19) protein_coding-promoter-TSS (ENSMUSG00000022043.19) 23 ENSMUSG00000022043.19 ENSMUSG00000022043 ENSMUST00000121006 Trim35 protein_coding Interval_58955 chr15 40846185 40846444 + 0 NA intron (ENSMUSG00000022306.9, intron 3 of 7) protein_coding-intron (ENSMUSG00000022306.9, intron 3 of 7) -61251 ENSMUSG00000116397.1 ENSMUSG00000116397 ENSMUST00000230162 Gm49525 TEC Interval_90698 chr2 31998319 31998506 + 0 NA exon (ENSMUSG00000001855.15, exon 4 of 4) protein_coding-exon (ENSMUSG00000001855.15, exon 4 of 4) 3591 ENSMUSG00000001855.15 ENSMUSG00000001855 ENSMUST00000124455 Nup214 protein_coding Interval_17904 chr10 80725542 80726453 + 0 NA intron (ENSMUSG00000020198.8, intron 6 of 8) protein_coding-intron (ENSMUSG00000020198.8, intron 6 of 30) -4807 ENSMUSG00000020198.8 ENSMUSG00000020198 ENSMUST00000219356 Ap3d1 protein_coding Interval_39586 chr12 91184731 91184936 + 0 NA intron (ENSMUSG00000061533.16, intron 6 of 12) protein_coding-intron (ENSMUSG00000061533.16, intron 20 of 25) 24972 ENSMUSG00000113983.1 ENSMUSG00000113983 ENSMUST00000220984 Gm47742 processed_pseudogene Interval_96451 chr2 123307000 123307226 + 0 NA Intergenic Intergenic 33189 ENSMUSG00000084372.1 ENSMUSG00000084372 ENSMUST00000119363 Gm13988 processed_pseudogene Interval_12050 chr1 189122575 189122794 + 0 NA Intergenic Intergenic -42980 ENSMUSG00000104464.1 ENSMUSG00000104464 ENSMUST00000192327 Gm18698 processed_pseudogene Interval_106369 chr3 95681192 95682149 + 0 NA exon (ENSMUSG00000015850.11, exon 8 of 18) protein_coding-exon (ENSMUSG00000015850.11, exon 8 of 18) -4519 ENSMUSG00000015850.11 ENSMUSG00000015850 ENSMUST00000148854 Adamtsl4 protein_coding Interval_23492 chr11 22928367 22928766 + 0 NA intron (ENSMUSG00000051355.18, intron 1 of 1) protein_coding-intron (ENSMUSG00000051355.18, intron 3 of 3) 44293 ENSMUSG00000051355.18 ENSMUSG00000051355 ENSMUST00000093270 Commd1 protein_coding Interval_103800 chr3 53058921 53059131 + 0 NA intron (ENSMUSG00000048332.13, intron 2 of 3) protein_coding-intron (ENSMUSG00000048332.13, intron 2 of 3) 16211 ENSMUSG00000104828.1 ENSMUSG00000104828 ENSMUST00000200370 Gm42898 TEC Interval_80949 chr18 50871830 50872573 + 0 NA Intergenic Intergenic -130903 ENSMUSG00000118088.1 ENSMUSG00000118088 ENSMUST00000236182 Gm3815 processed_pseudogene Interval_162650 chr9 7305228 7305752 + 0 NA Intergenic Intergenic 32976 ENSMUSG00000050578.10 ENSMUSG00000050578 ENSMUST00000015394 Mmp13 protein_coding Interval_123622 chr5 33896408 33896746 + 0 NA TTS (ENSMUSG00000057406.16) protein_coding-TTS (ENSMUSG00000057406.16) 2394 ENSMUSG00000098830.1 ENSMUSG00000098830 ENSMUST00000183676 Mir7024 miRNA Interval_9423 chr1 156982188 156984091 + 0 NA intron (ENSMUSG00000101768.1, intron 2 of 2) lincRNA-intron (ENSMUSG00000101768.1, intron 2 of 2) 43301 ENSMUSG00000101905.1 ENSMUSG00000101905 ENSMUST00000186765 4930439D14Rik antisense Interval_77661 chr17 93762332 93762821 + 0 NA Intergenic Intergenic -81542 ENSMUSG00000117537.1 ENSMUSG00000117537 ENSMUST00000234228 Gm50003 processed_pseudogene Interval_58350 chr15 33034197 33034472 + 0 NA exon (ENSMUSG00000022261.6, exon 5 of 5) protein_coding-exon (ENSMUSG00000022261.6, exon 5 of 5) 39189 ENSMUSG00000115140.1 ENSMUSG00000115140 ENSMUST00000226619 Gm32764 lincRNA Interval_27662 chr11 69364989 69365287 + 0 NA promoter-TSS (ENSMUSG00000018474.18) protein_coding-promoter-TSS (ENSMUSG00000018474.18) -14477 ENSMUSG00000087881.1 ENSMUSG00000087881 ENSMUST00000157256 Gm22442 scaRNA Interval_51083 chr14 22154499 22154672 + 0 NA intron (ENSMUSG00000063458.13, intron 2 of 3) protein_coding-intron (ENSMUSG00000063458.13, intron 2 of 6) -118482 ENSMUSG00000114205.1 ENSMUSG00000114205 ENSMUST00000225573 Gm7480 antisense Interval_19381 chr10 98683021 98684502 + 0 NA intron (ENSMUSG00000112647.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000112647.1, intron 1 of 1) 15949 ENSMUSG00000112647.1 ENSMUSG00000112647 ENSMUST00000217680 Gm5427 lincRNA Interval_59064 chr15 42947169 42947924 + 0 NA Intergenic Intergenic 223280 ENSMUSG00000051920.7 ENSMUSG00000051920 ENSMUST00000226402 Rspo2 protein_coding Interval_125276 chr5 65860410 65861544 + 0 NA promoter-TSS (ENSMUSG00000029204.7) protein_coding-promoter-TSS (ENSMUSG00000029204.7) 1660 ENSMUSG00000106681.1 ENSMUSG00000106681 ENSMUST00000201872 Gm43004 TEC Interval_1966 chr1 35194149 35194771 + 0 NA Intergenic Intergenic -15376 ENSMUSG00000077231.1 ENSMUSG00000077231 ENSMUST00000104043 Gm25096 snoRNA Interval_84018 chr19 6134028 6134220 + 0 NA TTS (ENSMUSG00000024944.6) protein_coding-TTS (ENSMUSG00000024944.6) 5840 ENSMUSG00000024944.6 ENSMUSG00000024944 ENSMUST00000123193 Arl2 protein_coding Interval_130016 chr5 123711827 123712433 + 0 NA intron (ENSMUSG00000029427.11, intron 5 of 5) protein_coding-intron (ENSMUSG00000029427.11, intron 5 of 13) 8644 ENSMUSG00000029427.11 ENSMUSG00000029427 ENSMUST00000200503 Zcchc8 protein_coding Interval_102216 chr3 19533037 19533483 + 0 NA intron (ENSMUSG00000027606.12, intron 1 of 4) protein_coding-intron (ENSMUSG00000027606.12, intron 1 of 4) 2013 ENSMUSG00000027606.12 ENSMUSG00000027606 ENSMUST00000165693 Dnajc5b protein_coding Interval_77514 chr17 90604076 90604269 + 0 NA intron (ENSMUSG00000024109.18, intron 2 of 3) protein_coding-intron (ENSMUSG00000024109.18, intron 10 of 20) -36415 ENSMUSG00000093716.1 ENSMUSG00000093716 ENSMUST00000175818 Gm19815 processed_pseudogene Interval_105647 chr3 88335695 88337586 + 0 NA promoter-TSS (ENSMUSG00000001420.13) protein_coding-promoter-TSS (ENSMUSG00000001420.13) 275 ENSMUSG00000001415.10 ENSMUSG00000001415 ENSMUST00000194359 Smg5 protein_coding Interval_81971 chr18 66519096 66520604 + 0 NA Intergenic Intergenic -2498 ENSMUSG00000117918.1 ENSMUSG00000117918 ENSMUST00000236080 Gm50157 processed_pseudogene Interval_111634 chr4 24892381 24893101 + 0 NA Intergenic Intergenic -5435 ENSMUSG00000028261.13 ENSMUSG00000028261 ENSMUST00000151249 Ndufaf4 protein_coding Interval_64840 chr16 16357810 16359461 + 0 NA promoter-TSS (ENSMUSG00000022789.15) protein_coding-promoter-TSS (ENSMUSG00000022789.15) 230 ENSMUSG00000022789.15 ENSMUSG00000022789 ENSMUST00000230038 Dnm1l protein_coding Interval_34925 chr12 13525208 13525433 + 0 NA intron (ENSMUSG00000020576.10, intron 4 of 6) protein_coding-intron (ENSMUSG00000020576.10, intron 47 of 51) -17352 ENSMUSG00000096633.1 ENSMUSG00000096633 ENSMUST00000097247 Gm22170 snRNA Interval_68687 chr16 84743299 84744090 + 0 NA Intergenic Intergenic 6344 ENSMUSG00000088058.1 ENSMUSG00000088058 ENSMUST00000157433 Gm26153 snoRNA Interval_170393 chr9 107633332 107633874 + 0 NA intron (ENSMUSG00000032562.13, intron 1 of 3) protein_coding-intron (ENSMUSG00000032562.13, intron 1 of 8) -1064 ENSMUSG00000102324.1 ENSMUSG00000102324 ENSMUST00000195284 Gm19721 TEC Interval_25531 chr11 49603035 49603224 + 0 NA Intergenic Intergenic -6134 ENSMUSG00000020357.3 ENSMUSG00000020357 ENSMUST00000020617 Flt4 protein_coding Interval_59419 chr15 52863300 52863581 + 0 NA Intergenic Intergenic -77173 ENSMUSG00000115137.1 ENSMUSG00000115137 ENSMUST00000228167 Gm34794 lincRNA Interval_39899 chr12 99496630 99497742 + 0 NA intron (ENSMUSG00000033713.12, intron 1 of 2) protein_coding-intron (ENSMUSG00000033713.12, intron 1 of 2) 66350 ENSMUSG00000033713.12 ENSMUSG00000033713 ENSMUST00000221283 Foxn3 protein_coding Interval_129565 chr5 120974205 120974447 + 0 NA intron (ENSMUSG00000029608.10, intron 4 of 21) protein_coding-intron (ENSMUSG00000029608.10, intron 4 of 21) -1979 ENSMUSG00000106841.1 ENSMUSG00000106841 ENSMUST00000201506 Gm42656 TEC Interval_72851 chr17 32658317 32658677 + 0 NA promoter-TSS (ENSMUSG00000090700.2) protein_coding-promoter-TSS (ENSMUSG00000090700.2) -403 ENSMUSG00000090700.2 ENSMUSG00000090700 ENSMUST00000234995 Cyp4f40 protein_coding Interval_39671 chr12 91984767 91985869 + 0 NA Intergenic Intergenic -15741 ENSMUSG00000098159.1 ENSMUSG00000098159 ENSMUST00000183260 Gm21614 processed_pseudogene Interval_70641 chr17 12717131 12717326 + 0 NA intron (ENSMUSG00000023830.14, intron 14 of 47) protein_coding-intron (ENSMUSG00000023830.14, intron 14 of 47) -15949 ENSMUSG00000023830.14 ENSMUSG00000023830 ENSMUST00000159127 Igf2r protein_coding Interval_94925 chr2 101822378 101824719 + 0 NA intron (ENSMUSG00000032841.15, intron 1 of 3) protein_coding-intron (ENSMUSG00000032841.15, intron 2 of 6) -25841 ENSMUSG00000032841.15 ENSMUSG00000032841 ENSMUST00000127358 Prr5l protein_coding Interval_2173 chr1 36854171 36854462 + 0 NA intron (ENSMUSG00000026116.11, intron 6 of 41) protein_coding-intron (ENSMUSG00000026116.11, intron 5 of 40) 17729 ENSMUSG00000103016.1 ENSMUSG00000103016 ENSMUST00000192008 Gm37506 TEC Interval_63404 chr15 100838309 100839292 + 0 NA Intergenic Intergenic -6409 ENSMUSG00000115912.1 ENSMUSG00000115912 ENSMUST00000230694 Gm35569 lincRNA Interval_152995 chr7 140673093 140676501 + 0 NA exon (ENSMUSG00000059136.4, exon 3 of 3) protein_coding-exon (ENSMUSG00000059136.4, exon 3 of 3) -5060 ENSMUSG00000109892.1 ENSMUSG00000109892 ENSMUST00000210499 Olfr540-ps1 unprocessed_pseudogene Interval_34698 chr12 8759172 8759769 + 0 NA Intergenic Intergenic 11711 ENSMUSG00000096940.1 ENSMUSG00000096940 ENSMUST00000181803 Gm4755 bidirectional_promoter_lncRNA Interval_13108 chr10 11457020 11457700 + 0 NA exon (ENSMUSG00000055493.4, exon 4 of 4) protein_coding-exon (ENSMUSG00000055493.4, exon 4 of 4) -47936 ENSMUSG00000111949.1 ENSMUSG00000111949 ENSMUST00000219639 Gm48679 processed_pseudogene Interval_10325 chr1 169174149 169175491 + 0 NA Intergenic Intergenic -155731 ENSMUSG00000098829.1 ENSMUSG00000098829 ENSMUST00000184979 Mir6354 miRNA Interval_162489 chr9 3199080 3200598 + 0 NA promoter-TSS (ENSMUSG00000042360.12) processed_transcript-promoter-TSS (ENSMUSG00000042360.12) -40 ENSMUSG00000042360.12 ENSMUSG00000042360 ENSMUST00000188577 4930433N12Rik processed_transcript Interval_166533 chr9 60687452 60688610 + 0 NA promoter-TSS (ENSMUSG00000047766.15) protein_coding-promoter-TSS (ENSMUSG00000047766.15) -497 ENSMUSG00000047766.15 ENSMUSG00000047766 ENSMUST00000132366 Lrrc49 protein_coding Interval_104177 chr3 59783346 59784459 + 0 NA promoter-TSS (ENSMUSG00000102757.1) processed_pseudogene-promoter-TSS (ENSMUSG00000102757.1) -214 ENSMUSG00000102757.1 ENSMUSG00000102757 ENSMUST00000195851 Gm2756 processed_pseudogene Interval_19395 chr10 98941025 98941324 + 0 NA intron (ENSMUSG00000019943.10, intron 1 of 8) protein_coding-intron (ENSMUSG00000019943.10, intron 1 of 20) -49706 ENSMUSG00000019943.10 ENSMUSG00000019943 ENSMUST00000218419 Atp2b1 protein_coding Interval_127865 chr5 108370669 108370878 + 0 NA promoter-TSS (ENSMUSG00000072769.6) lincRNA-promoter-TSS (ENSMUSG00000072769.6) -89 ENSMUSG00000072769.6 ENSMUSG00000072769 ENSMUST00000199724 Gm10419 lincRNA Interval_156355 chr8 47647812 47649621 + 0 NA Intergenic Intergenic -15952 ENSMUSG00000062458.5 ENSMUSG00000062458 ENSMUST00000071573 Gm8623 processed_pseudogene Interval_29565 chr11 84931956 84932684 + 0 NA Intergenic Intergenic -15996 ENSMUSG00000020526.12 ENSMUSG00000020526 ENSMUST00000156046 Znhit3 protein_coding Interval_97742 chr2 143685102 143685442 + 0 NA intron (ENSMUSG00000027419.9, intron 2 of 11) protein_coding-intron (ENSMUSG00000027419.9, intron 2 of 11) 110693 ENSMUSG00000087115.7 ENSMUSG00000087115 ENSMUST00000156362 Pcsk2os2 antisense Interval_80020 chr18 36687390 36688117 + 0 NA intron (ENSMUSG00000044719.5, intron 9 of 12) protein_coding-intron (ENSMUSG00000044719.5, intron 9 of 12) 5820 ENSMUSG00000044719.5 ENSMUSG00000044719 ENSMUST00000235134 E230025N22Rik protein_coding Interval_117493 chr4 124145814 124146156 + 0 NA Intergenic Intergenic 133192 ENSMUSG00000103541.1 ENSMUSG00000103541 ENSMUST00000193103 Gm37667 TEC Interval_88067 chr19 58788768 58789309 + 0 NA intron (ENSMUSG00000026931.10, intron 3 of 5) protein_coding-intron (ENSMUSG00000026931.10, intron 3 of 5) -1157 ENSMUSG00000091410.1 ENSMUSG00000091410 ENSMUST00000165577 Gm17150 processed_pseudogene Interval_92254 chr2 57336686 57337245 + 0 NA intron (ENSMUSG00000026827.12, intron 6 of 16) protein_coding-intron (ENSMUSG00000026827.12, intron 6 of 16) -61279 ENSMUSG00000084292.1 ENSMUSG00000084292 ENSMUST00000118714 Gm13535 processed_pseudogene Interval_13538 chr10 19321710 19322212 + 0 NA intron (ENSMUSG00000110917.1, intron 4 of 4) lincRNA-intron (ENSMUSG00000110917.1, intron 4 of 4) 30972 ENSMUSG00000110917.1 ENSMUSG00000110917 ENSMUST00000213234 Gm33056 lincRNA Interval_68686 chr16 84737275 84737566 + 0 NA promoter-TSS (ENSMUSG00000088058.1) snoRNA-promoter-TSS (ENSMUSG00000088058.1) 70 ENSMUSG00000088058.1 ENSMUSG00000088058 ENSMUST00000157433 Gm26153 snoRNA Interval_116389 chr4 111308604 111309199 + 0 NA intron (ENSMUSG00000061298.14, intron 1 of 6) protein_coding-intron (ENSMUSG00000061298.14, intron 5 of 12) 11704 ENSMUSG00000083904.1 ENSMUSG00000083904 ENSMUST00000117305 Gm12805 processed_pseudogene Interval_123911 chr5 36464486 36465698 + 0 NA promoter-TSS (ENSMUSG00000029198.3) protein_coding-promoter-TSS (ENSMUSG00000029198.3) 94 ENSMUSG00000029198.3 ENSMUSG00000029198 ENSMUST00000031099 Grpel1 protein_coding Interval_52734 chr14 49182867 49183431 + 0 NA intron (ENSMUSG00000036282.15, intron 4 of 4) protein_coding-intron (ENSMUSG00000036282.15, intron 3 of 3) 10923 ENSMUSG00000036282.15 ENSMUSG00000036282 ENSMUST00000134984 Naa30 protein_coding Interval_154749 chr8 23104802 23105478 + 0 NA intron (ENSMUSG00000031543.18, intron 17 of 45) protein_coding-intron (ENSMUSG00000031543.18, intron 17 of 44) -3044 ENSMUSG00000106605.1 ENSMUSG00000106605 ENSMUST00000197671 Gm44365 miRNA Interval_61537 chr15 82229229 82230436 + 0 NA intron (ENSMUSG00000116009.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000116009.1, intron 1 of 1) 3699 ENSMUSG00000116009.1 ENSMUSG00000116009 ENSMUST00000230791 Gm49503 lincRNA Interval_30985 chr11 97585953 97586466 + 0 NA Intergenic Intergenic -10983 ENSMUSG00000038453.17 ENSMUSG00000038453 ENSMUST00000145845 Srcin1 protein_coding Interval_16698 chr10 67082450 67084359 + 0 NA intron (ENSMUSG00000019873.8, intron 1 of 8) protein_coding-intron (ENSMUSG00000019873.8, intron 1 of 7) -46082 ENSMUSG00000019873.8 ENSMUSG00000019873 ENSMUST00000219431 Reep3 protein_coding Interval_108756 chr3 131083525 131085482 + 0 NA Intergenic Intergenic 27587 ENSMUSG00000106086.1 ENSMUSG00000106086 ENSMUST00000196419 Lef1os1 antisense Interval_30674 chr11 95812093 95812742 + 0 NA intron (ENSMUSG00000075595.9, intron 5 of 6) protein_coding-intron (ENSMUSG00000075595.9, intron 5 of 6) -18346 ENSMUSG00000050860.6 ENSMUSG00000050860 ENSMUST00000176538 Phospho1 protein_coding Interval_70119 chr17 5466679 5467072 + 0 NA Intergenic Intergenic 16089 ENSMUSG00000116691.1 ENSMUSG00000116691 ENSMUST00000231799 Gm8363 processed_pseudogene Interval_129564 chr5 120968398 120968877 + 0 NA intron (ENSMUSG00000029608.10, intron 5 of 21) protein_coding-intron (ENSMUSG00000029608.10, intron 5 of 21) 3710 ENSMUSG00000106841.1 ENSMUSG00000106841 ENSMUST00000201506 Gm42656 TEC Interval_33862 chr11 119056298 119057023 + 0 NA Intergenic Intergenic -15749 ENSMUSG00000025578.9 ENSMUSG00000025578 ENSMUST00000143831 Cbx8 protein_coding Interval_65918 chr16 30231821 30232648 + 0 NA Intergenic Intergenic -22918 ENSMUSG00000116938.1 ENSMUSG00000116938 ENSMUST00000231234 Gm49645 processed_pseudogene Interval_92462 chr2 59866672 59867009 + 0 NA intron (ENSMUSG00000026988.15, intron 6 of 8) protein_coding-intron (ENSMUSG00000026988.15, intron 5 of 10) -4114 ENSMUSG00000026988.15 ENSMUSG00000026988 ENSMUST00000131285 Wdsub1 protein_coding Interval_116908 chr4 118160212 118160649 + 0 NA exon (ENSMUSG00000033326.15, exon 11 of 19) protein_coding-exon (ENSMUSG00000033326.15, exon 11 of 19) 1227 ENSMUSG00000033326.15 ENSMUSG00000033326 ENSMUST00000164821 Kdm4a protein_coding Interval_97071 chr2 130958560 130959483 + 0 NA intron (ENSMUSG00000027312.14, intron 8 of 23) protein_coding-intron (ENSMUSG00000027312.14, intron 8 of 28) -28963 ENSMUSG00000083953.1 ENSMUSG00000083953 ENSMUST00000121009 Gm14049 processed_pseudogene Interval_75114 chr17 63560862 63561134 + 0 NA Intergenic Intergenic -9905 ENSMUSG00000117256.1 ENSMUSG00000117256 ENSMUST00000233628 Gm5497 processed_pseudogene Interval_95015 chr2 103067015 103067406 + 0 NA intron (ENSMUSG00000010914.10, intron 1 of 4) protein_coding-intron (ENSMUSG00000010914.10, intron 1 of 10) 6125 ENSMUSG00000010914.10 ENSMUSG00000010914 ENSMUST00000111183 Pdhx protein_coding Interval_33719 chr11 118079968 118081398 + 0 NA intron (ENSMUSG00000033987.16, intron 42 of 80) protein_coding-intron (ENSMUSG00000033987.16, intron 42 of 80) 8511 ENSMUSG00000033987.16 ENSMUSG00000033987 ENSMUST00000018719 Dnah17 protein_coding Interval_65458 chr16 22438450 22440454 + 0 NA intron (ENSMUSG00000013089.15, intron 1 of 6) protein_coding-intron (ENSMUSG00000013089.15, intron 1 of 12) -37623 ENSMUSG00000013089.15 ENSMUSG00000013089 ENSMUST00000170393 Etv5 protein_coding Interval_161015 chr8 116927812 116928847 + 0 NA intron (ENSMUSG00000031756.5, intron 2 of 9) protein_coding-intron (ENSMUSG00000031756.5, intron 3 of 11) 6582 ENSMUSG00000031756.5 ENSMUSG00000031756 ENSMUST00000212184 Cenpn protein_coding Interval_167151 chr9 65663334 65664615 + 0 NA Intergenic Intergenic 4997 ENSMUSG00000032387.15 ENSMUSG00000032387 ENSMUST00000216769 Rbpms2 protein_coding Interval_17817 chr10 80248736 80249871 + 0 NA promoter-TSS (ENSMUSG00000020153.14) protein_coding-promoter-TSS (ENSMUSG00000020153.14) -182 ENSMUSG00000020153.14 ENSMUSG00000020153 ENSMUST00000155336 Ndufs7 protein_coding Interval_160273 chr8 107599552 107601213 + 0 NA Intergenic Intergenic -11924 ENSMUSG00000039067.5 ENSMUSG00000039067 ENSMUST00000213080 Psmd7 protein_coding Interval_119134 chr4 135779495 135780988 + 0 NA intron (ENSMUSG00000037139.15, intron 14 of 36) protein_coding-intron (ENSMUSG00000037139.15, intron 14 of 36) -17949 ENSMUSG00000037139.15 ENSMUSG00000037139 ENSMUST00000142177 Myom3 protein_coding Interval_45279 chr13 53886298 53886488 + 0 NA Intergenic Intergenic -2234 ENSMUSG00000114012.1 ENSMUSG00000114012 ENSMUST00000221478 Gm18974 processed_pseudogene Interval_172183 chrX 8257976 8259021 + 0 NA Intergenic Intergenic -12142 ENSMUSG00000031171.11 ENSMUSG00000031171 ENSMUST00000147467 Ftsj1 protein_coding Interval_105180 chr3 83286796 83287301 + 0 NA intron (ENSMUSG00000102692.1, intron 10 of 19) protein_coding-intron (ENSMUSG00000102692.1, intron 10 of 19) -116354 ENSMUSG00000103459.1 ENSMUSG00000103459 ENSMUST00000193692 Gm38096 lincRNA Interval_79793 chr18 35137501 35138442 + 0 NA intron (ENSMUSG00000037815.7, intron 1 of 3) protein_coding-intron (ENSMUSG00000037815.7, intron 1 of 17) -50348 ENSMUSG00000117727.1 ENSMUSG00000117727 ENSMUST00000238134 Gm3587 lincRNA Interval_8333 chr1 137417908 137418756 + 0 NA Intergenic Intergenic -51085 ENSMUSG00000088164.1 ENSMUSG00000088164 ENSMUST00000157539 Gm23534 snoRNA Interval_53495 chr14 57835178 57835379 + 0 NA TTS (ENSMUSG00000021969.8) protein_coding-TTS (ENSMUSG00000021969.8) -4069 ENSMUSG00000065374.1 ENSMUSG00000065374 ENSMUST00000083440 Gm22738 snRNA Interval_159596 chr8 95715604 95717054 + 0 NA promoter-TSS (ENSMUSG00000031671.11) protein_coding-promoter-TSS (ENSMUSG00000031671.11) -680 ENSMUSG00000031671.11 ENSMUSG00000031671 ENSMUST00000154593 Setd6 protein_coding Interval_74773 chr17 56472282 56473149 + 0 NA intron (ENSMUSG00000013236.17, intron 1 of 6) protein_coding-intron (ENSMUSG00000013236.17, intron 1 of 32) -36730 ENSMUSG00000013236.17 ENSMUSG00000013236 ENSMUST00000224193 Ptprs protein_coding Interval_143967 chr7 18679209 18681384 + 0 NA intron (ENSMUSG00000063305.10, intron 4 of 4) protein_coding-intron (ENSMUSG00000063305.10, intron 5 of 5) 5889 ENSMUSG00000063305.10 ENSMUSG00000063305 ENSMUST00000076677 Psg20 protein_coding Interval_12381 chr1 192794787 192795369 + 0 NA Intergenic Intergenic -24086 ENSMUSG00000037375.16 ENSMUSG00000037375 ENSMUST00000192946 Hhat protein_coding Interval_53270 chr14 55711389 55712044 + 0 NA TTS (ENSMUSG00000022218.16) protein_coding-TTS (ENSMUSG00000022218.16) 1776 ENSMUSG00000022218.16 ENSMUSG00000022218 ENSMUST00000228123 Tgm1 protein_coding Interval_73430 chr17 37196184 37198656 + 0 NA exon (ENSMUSG00000043827.9, exon 1 of 1) protein_coding-exon (ENSMUSG00000043827.9, exon 1 of 1) 3528 ENSMUSG00000035186.6 ENSMUSG00000035186 ENSMUST00000038844 Ubd protein_coding Interval_122122 chr5 17509066 17509353 + 0 NA Intergenic Intergenic 15986 ENSMUSG00000106358.1 ENSMUSG00000106358 ENSMUST00000196224 Gm7047 processed_pseudogene Interval_101291 chr2 180205290 180205822 + 0 NA intron (ENSMUSG00000015647.9, intron 6 of 78) protein_coding-intron (ENSMUSG00000015647.9, intron 6 of 78) -25733 ENSMUSG00000098735.1 ENSMUSG00000098735 ENSMUST00000185089 Mir7005 miRNA Interval_163310 chr9 20760803 20761498 + 0 NA Intergenic Intergenic -34213 ENSMUSG00000032172.8 ENSMUSG00000032172 ENSMUST00000215039 Olfm2 protein_coding Interval_75633 chr17 69555676 69555991 + 0 NA Intergenic Intergenic 1603 ENSMUSG00000117122.1 ENSMUSG00000117122 ENSMUST00000233087 Gm9319 processed_pseudogene Interval_153010 chr7 140844914 140845982 + 0 NA promoter-TSS (ENSMUSG00000038801.6) protein_coding-promoter-TSS (ENSMUSG00000038801.6) -99 ENSMUSG00000038801.6 ENSMUSG00000038801 ENSMUST00000035300 Scgb1c1 protein_coding Interval_12921 chr10 8171520 8172197 + 0 NA Intergenic Intergenic -4273 ENSMUSG00000112109.1 ENSMUSG00000112109 ENSMUST00000219578 Gm30906 lincRNA Interval_104521 chr3 67373155 67374619 + 0 NA promoter-TSS (ENSMUSG00000048416.15) protein_coding-promoter-TSS (ENSMUSG00000048416.15) -238 ENSMUSG00000048416.15 ENSMUSG00000048416 ENSMUST00000061322 Mlf1 protein_coding Interval_126810 chr5 93115845 93116129 + 0 NA intron (ENSMUSG00000058013.11, intron 1 of 9) protein_coding-intron (ENSMUSG00000058013.11, intron 1 of 9) 22451 ENSMUSG00000058013.11 ENSMUSG00000058013 ENSMUST00000201695 Septin11 protein_coding Interval_33632 chr11 117638224 117639036 + 0 NA Intergenic Intergenic 27383 ENSMUSG00000054418.6 ENSMUSG00000054418 ENSMUST00000155384 2900041M22Rik processed_transcript Interval_73811 chr17 43982290 43982975 + 0 NA intron (ENSMUSG00000039601.16, intron 1 of 2) protein_coding-intron (ENSMUSG00000039601.16, intron 1 of 3) -20791 ENSMUSG00000088576.1 ENSMUSG00000088576 ENSMUST00000157951 Gm24532 misc_RNA Interval_142360 chr6 140871193 140871600 + 0 NA Intergenic Intergenic -84239 ENSMUSG00000107638.2 ENSMUSG00000107638 ENSMUST00000204355 Gm30524 lincRNA Interval_81738 chr18 64231801 64232637 + 0 NA intron (ENSMUSG00000086128.8, intron 2 of 2) antisense-intron (ENSMUSG00000086128.8, intron 2 of 5) -11697 ENSMUSG00000118022.1 ENSMUSG00000118022 ENSMUST00000237134 Prdx1-ps processed_pseudogene Interval_138983 chr6 94003114 94004246 + 0 NA intron (ENSMUSG00000045095.16, intron 1 of 24) protein_coding-intron (ENSMUSG00000045095.16, intron 1 of 21) -91176 ENSMUSG00000045095.16 ENSMUSG00000045095 ENSMUST00000203034 Magi1 protein_coding Interval_40528 chr12 105519256 105519787 + 0 NA Intergenic Intergenic 6041 ENSMUSG00000113535.1 ENSMUSG00000113535 ENSMUST00000223443 AU015791 lincRNA Interval_26860 chr11 61151127 61151386 + 0 NA TTS (ENSMUSG00000042506.15) protein_coding-TTS (ENSMUSG00000042506.15) 17019 ENSMUSG00000042506.15 ENSMUSG00000042506 ENSMUST00000174220 Usp22 protein_coding Interval_146769 chr7 50258099 50258339 + 0 NA exon (ENSMUSG00000055409.14, exon 11 of 20) protein_coding-exon (ENSMUSG00000055409.14, exon 11 of 20) 159909 ENSMUSG00000055409.14 ENSMUSG00000055409 ENSMUST00000154410 Nell1 protein_coding Interval_113711 chr4 57798388 57798664 + 0 NA intron (ENSMUSG00000038729.24, intron 1 of 1) protein_coding-intron (ENSMUSG00000038729.24, intron 2 of 2) -22524 ENSMUSG00000038729.24 ENSMUSG00000038729 ENSMUST00000102902 Pakap protein_coding Interval_40965 chr12 110301464 110301942 + 0 NA Intergenic Intergenic -14287 ENSMUSG00000113198.1 ENSMUSG00000113198 ENSMUST00000222676 Gm6988 processed_pseudogene Interval_59416 chr15 52737021 52737815 + 0 NA Intergenic Intergenic 25010 ENSMUSG00000038622.8 ENSMUSG00000038622 ENSMUST00000037115 Med30 protein_coding Interval_53322 chr14 56155522 56155901 + 0 NA TTS (ENSMUSG00000040284.4) protein_coding-TTS (ENSMUSG00000040284.4) 3868 ENSMUSG00000040284.4 ENSMUSG00000040284 ENSMUST00000015578 Gzmg protein_coding Interval_35296 chr12 19985888 19986253 + 0 NA Intergenic Intergenic -16707 ENSMUSG00000113287.1 ENSMUSG00000113287 ENSMUST00000221342 Gm40853 unprocessed_pseudogene Interval_37695 chr12 71147590 71148343 + 0 NA intron (ENSMUSG00000034601.17, intron 4 of 29) protein_coding-intron (ENSMUSG00000034601.17, intron 4 of 27) 11118 ENSMUSG00000034601.17 ENSMUSG00000034601 ENSMUST00000134748 2700049A03Rik protein_coding Interval_27975 chr11 71764750 71766586 + 0 NA intron (ENSMUSG00000020811.16, intron 2 of 8) protein_coding-intron (ENSMUSG00000020811.16, intron 2 of 8) 15748 ENSMUSG00000020811.16 ENSMUSG00000020811 ENSMUST00000132095 Wscd1 protein_coding Interval_165755 chr9 52213008 52213174 + 0 NA Intergenic Intergenic -44519 ENSMUSG00000035164.8 ENSMUSG00000035164 ENSMUST00000165519 Zc3h12c protein_coding Interval_48321 chr13 98182815 98183526 + 0 NA intron (ENSMUSG00000021662.11, intron 1 of 34) protein_coding-intron (ENSMUSG00000021662.11, intron 1 of 35) 70987 ENSMUSG00000041747.3 ENSMUSG00000041747 ENSMUST00000224842 Utp15 protein_coding Interval_132939 chr5 148853972 148854563 + 0 NA Intergenic Intergenic 33500 ENSMUSG00000087647.2 ENSMUSG00000087647 ENSMUST00000136919 Gm15407 lincRNA Interval_123761 chr5 35299525 35299945 + 0 NA Intergenic Intergenic 21416 ENSMUSG00000045318.6 ENSMUSG00000045318 ENSMUST00000049545 Adra2c protein_coding Interval_158731 chr8 85595254 85595979 + 0 NA Intergenic Intergenic -4216 ENSMUSG00000110341.1 ENSMUSG00000110341 ENSMUST00000210575 Gm45424 TEC Interval_96172 chr2 120268482 120269357 + 0 NA exon (ENSMUSG00000070719.4, exon 19 of 20) protein_coding-exon (ENSMUSG00000070719.4, exon 19 of 20) 20278 ENSMUSG00000070719.4 ENSMUSG00000070719 ENSMUST00000094665 Pla2g4d protein_coding Interval_72800 chr17 32246245 32246558 + 0 NA intron (ENSMUSG00000024002.18, intron 1 of 8) protein_coding-intron (ENSMUSG00000024002.18, intron 2 of 19) 4238 ENSMUSG00000116414.2 ENSMUSG00000116414 ENSMUST00000230961 Gm4432 processed_pseudogene Interval_35462 chr12 22715451 22716402 + 0 NA Intergenic Intergenic 10664 ENSMUSG00000113569.1 ENSMUSG00000113569 ENSMUST00000220517 Gm48035 processed_pseudogene Interval_141760 chr6 134265243 134265433 + 0 NA intron (ENSMUSG00000030199.16, intron 8 of 8) protein_coding-intron (ENSMUSG00000030199.16, intron 7 of 7) -18972 ENSMUSG00000108263.1 ENSMUSG00000108263 ENSMUST00000204426 1700051K13Rik TEC Interval_150383 chr7 110047544 110048370 + 0 NA intron (ENSMUSG00000066232.4, intron 14 of 16) protein_coding-intron (ENSMUSG00000066232.4, intron 15 of 24) 1593 ENSMUSG00000064451.1 ENSMUSG00000064451 ENSMUST00000082517 Snora23 snoRNA Interval_49062 chr13 107644759 107646393 + 0 NA Intergenic Intergenic -32727 ENSMUSG00000114807.1 ENSMUSG00000114807 ENSMUST00000224826 Gm32090 lincRNA Interval_2742 chr1 44077283 44077542 + 0 NA intron (ENSMUSG00000091844.2, intron 3 of 3) protein_coding-intron (ENSMUSG00000091844.2, intron 3 of 3) 2334 ENSMUSG00000091844.2 ENSMUSG00000091844 ENSMUST00000168641 Gm8251 protein_coding Interval_123454 chr5 32655335 32656104 + 0 NA intron (ENSMUSG00000014932.15, intron 8 of 11) protein_coding-intron (ENSMUSG00000014932.15, intron 8 of 11) -4654 ENSMUSG00000085234.1 ENSMUSG00000085234 ENSMUST00000155976 Gm15614 antisense Interval_79090 chr18 24456613 24457284 + 0 NA Intergenic Intergenic -13902 ENSMUSG00000024273.8 ENSMUSG00000024273 ENSMUST00000097646 2700062C07Rik protein_coding Interval_87692 chr19 55079793 55080265 + 0 NA intron (ENSMUSG00000024978.11, intron 15 of 22) protein_coding-intron (ENSMUSG00000024978.11, intron 13 of 20) -19473 ENSMUSG00000118099.1 ENSMUSG00000118099 ENSMUST00000237370 Gm31356 antisense Interval_147901 chr7 75366426 75366839 + 0 NA TTS (ENSMUSG00000069196.6) processed_pseudogene-TTS (ENSMUSG00000069196.6) 577 ENSMUSG00000069196.6 ENSMUSG00000069196 ENSMUST00000091506 Gm10161 processed_pseudogene Interval_57285 chr15 8428538 8428827 + 0 NA intron (ENSMUSG00000022141.7, intron 1 of 46) protein_coding-intron (ENSMUSG00000022141.7, intron 1 of 46) 15781 ENSMUSG00000022141.7 ENSMUSG00000022141 ENSMUST00000052965 Nipbl protein_coding Interval_92428 chr2 59670109 59672025 + 0 NA intron (ENSMUSG00000035168.16, intron 1 of 25) protein_coding-intron (ENSMUSG00000035168.16, intron 2 of 26) -106383 ENSMUSG00000081157.1 ENSMUSG00000081157 ENSMUST00000118837 Gm13552 processed_pseudogene Interval_16690 chr10 67045789 67046136 + 0 NA intron (ENSMUSG00000019873.8, intron 2 of 8) protein_coding-intron (ENSMUSG00000019873.8, intron 2 of 7) -8640 ENSMUSG00000019873.8 ENSMUSG00000019873 ENSMUST00000219431 Reep3 protein_coding Interval_8669 chr1 146679912 146680115 + 0 NA intron (ENSMUSG00000035131.14, intron 3 of 8) protein_coding-intron (ENSMUSG00000035131.14, intron 2 of 7) -45568 ENSMUSG00000080078.2 ENSMUSG00000080078 ENSMUST00000116191 Gm15583 processed_pseudogene Interval_133400 chr6 4666117 4666394 + 0 NA Intergenic Intergenic 35128 ENSMUSG00000015189.12 ENSMUSG00000015189 ENSMUST00000204372 Casd1 protein_coding Interval_133647 chr6 8009049 8009590 + 0 NA intron (ENSMUSG00000068794.7, intron 33 of 34) protein_coding-intron (ENSMUSG00000068794.7, intron 33 of 34) -25936 ENSMUSG00000096403.2 ENSMUSG00000096403 ENSMUST00000178598 Rnps1-ps processed_pseudogene Interval_19984 chr10 111670328 111671034 + 0 NA Intergenic Intergenic -20869 ENSMUSG00000112357.1 ENSMUSG00000112357 ENSMUST00000217989 Gm47864 processed_pseudogene Interval_71849 chr17 26493799 26495749 + 0 NA intron (ENSMUSG00000118107.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000118107.1, intron 1 of 2) -3865 ENSMUSG00000118107.1 ENSMUSG00000118107 ENSMUST00000236309 Gm34455 lincRNA Interval_85926 chr19 33375484 33376182 + 0 NA intron (ENSMUSG00000071573.14, intron 2 of 4) polymorphic_pseudogene-intron (ENSMUSG00000071573.14, intron 4 of 6) 16462 ENSMUSG00000071573.14 ENSMUSG00000071573 ENSMUST00000163093 Rnls polymorphic_pseudogene Interval_118353 chr4 130838899 130839109 + 0 NA Intergenic Intergenic -12691 ENSMUSG00000097224.1 ENSMUSG00000097224 ENSMUST00000181227 Gm26716 antisense Interval_138393 chr6 87838223 87839284 + 0 NA promoter-TSS (ENSMUSG00000030056.8) protein_coding-promoter-TSS (ENSMUSG00000030056.8) -53 ENSMUSG00000030056.8 ENSMUSG00000030056 ENSMUST00000204892 Isy1 protein_coding Interval_57709 chr15 16393252 16393450 + 0 NA Intergenic Intergenic 103461 ENSMUSG00000115614.1 ENSMUSG00000115614 ENSMUST00000227529 Gm41276 lincRNA Interval_130061 chr5 124006500 124007098 + 0 NA TTS (ENSMUSG00000102725.2) TEC-TTS (ENSMUSG00000102725.2) 2151 ENSMUSG00000102725.2 ENSMUSG00000102725 ENSMUST00000192309 Gm37939 TEC Interval_48083 chr13 95868702 95869100 + 0 NA intron (ENSMUSG00000021676.10, intron 1 of 6) protein_coding-intron (ENSMUSG00000021676.10, intron 1 of 35) 28219 ENSMUSG00000065866.1 ENSMUSG00000065866 ENSMUST00000083932 Gm24032 snRNA Interval_154092 chr8 12620478 12620942 + 0 NA intron (ENSMUSG00000000759.14, intron 6 of 7) protein_coding-intron (ENSMUSG00000000759.14, intron 20 of 21) -45385 ENSMUSG00000088641.1 ENSMUSG00000088641 ENSMUST00000158016 Gm26483 miRNA Interval_64911 chr16 17156525 17156993 + 0 NA TTS (ENSMUSG00000038965.17) protein_coding-TTS (ENSMUSG00000038965.17) 9822 ENSMUSG00000041774.16 ENSMUSG00000041774 ENSMUST00000231539 Ydjc protein_coding Interval_42299 chr13 11908222 11908512 + 0 NA intron (ENSMUSG00000021313.16, intron 3 of 104) protein_coding-intron (ENSMUSG00000021313.16, intron 3 of 104) -31191 ENSMUSG00000098110.1 ENSMUSG00000098110 ENSMUST00000182176 Gm26956 processed_pseudogene Interval_165174 chr9 44996464 44997156 + 0 NA Intergenic Intergenic -2619 ENSMUSG00000111203.1 ENSMUSG00000111203 ENSMUST00000214762 Gm48719 antisense Interval_51297 chr14 25816366 25816982 + 0 NA Intergenic Intergenic -6793 ENSMUSG00000099057.1 ENSMUSG00000099057 ENSMUST00000184296 Gm27185 processed_pseudogene Interval_163511 chr9 21794661 21795949 + 0 NA TTS (ENSMUSG00000032194.9) protein_coding-TTS (ENSMUSG00000032194.9) 3198 ENSMUSG00000032194.9 ENSMUSG00000032194 ENSMUST00000213691 Kank2 protein_coding Interval_85969 chr19 34319404 34319652 + 0 NA intron (ENSMUSG00000024778.13, intron 8 of 9) protein_coding-intron (ENSMUSG00000024778.13, intron 7 of 8) 19453 ENSMUSG00000024778.13 ENSMUSG00000024778 ENSMUST00000236731 Fas protein_coding Interval_14938 chr10 41288439 41289417 + 0 NA intron (ENSMUSG00000038417.4, intron 1 of 22) protein_coding-intron (ENSMUSG00000038417.4, intron 1 of 22) 14332 ENSMUSG00000038417.4 ENSMUSG00000038417 ENSMUST00000043814 Fig4 protein_coding Interval_159657 chr8 96152095 96153365 + 0 NA Intergenic Intergenic -156789 ENSMUSG00000110623.1 ENSMUSG00000110623 ENSMUST00000212446 Gm32005 lincRNA Interval_68707 chr16 84850398 84851367 + 0 NA intron (ENSMUSG00000008976.16, intron 5 of 9) protein_coding-intron (ENSMUSG00000008976.16, intron 5 of 9) -5158 ENSMUSG00000008976.16 ENSMUSG00000008976 ENSMUST00000139101 Gabpa protein_coding Interval_102868 chr3 32408821 32409123 + 0 NA intron (ENSMUSG00000027665.13, intron 1 of 20) protein_coding-intron (ENSMUSG00000027665.13, intron 1 of 20) -35983 ENSMUSG00000102825.1 ENSMUSG00000102825 ENSMUST00000191961 Gm36990 TEC Interval_132660 chr5 147001456 147002275 + 0 NA Intergenic Intergenic 17170 ENSMUSG00000016520.7 ENSMUSG00000016520 ENSMUST00000123092 Lnx2 protein_coding Interval_78027 chr18 7003949 7005408 + 0 NA promoter-TSS (ENSMUSG00000061013.6) protein_coding-promoter-TSS (ENSMUSG00000061013.6) -285 ENSMUSG00000117356.1 ENSMUSG00000117356 ENSMUST00000234596 Gm46633 bidirectional_promoter_lncRNA Interval_168658 chr9 85580757 85581332 + 0 NA Intergenic Intergenic -27279 ENSMUSG00000110956.1 ENSMUSG00000110956 ENSMUST00000216435 Gm48834 lincRNA Interval_125410 chr5 66782952 66783851 + 0 NA intron (ENSMUSG00000037736.20, intron 1 of 31) protein_coding-intron (ENSMUSG00000037736.20, intron 1 of 25) 65031 ENSMUSG00000107284.1 ENSMUSG00000107284 ENSMUST00000202958 Gm43280 TEC Interval_98215 chr2 149995926 149996510 + 0 NA intron (ENSMUSG00000074736.10, intron 3 of 3) protein_coding-intron (ENSMUSG00000074736.10, intron 4 of 4) 115358 ENSMUSG00000083055.1 ENSMUSG00000083055 ENSMUST00000119999 Gm14140 processed_pseudogene Interval_76045 chr17 74554205 74554783 + 0 NA intron (ENSMUSG00000024073.16, intron 3 of 72) protein_coding-intron (ENSMUSG00000024073.16, intron 3 of 72) -26850 ENSMUSG00000117358.1 ENSMUSG00000117358 ENSMUST00000234285 Gm31645 processed_transcript Interval_163604 chr9 22475111 22476142 + 0 NA promoter-TSS (ENSMUSG00000035919.16) protein_coding-promoter-TSS (ENSMUSG00000035919.16) 4820 ENSMUSG00000090067.1 ENSMUSG00000090067 ENSMUST00000160362 Gm2976 processed_pseudogene Interval_101179 chr2 178948688 178949838 + 0 NA Intergenic Intergenic 71870 ENSMUSG00000082215.3 ENSMUSG00000082215 ENSMUST00000118225 Gm14314 processed_pseudogene Interval_69617 chr16 94641828 94642046 + 0 NA intron (ENSMUSG00000022897.15, intron 2 of 5) protein_coding-intron (ENSMUSG00000022897.15, intron 2 of 11) 21560 ENSMUSG00000081692.1 ENSMUSG00000081692 ENSMUST00000119372 Gm15971 processed_pseudogene Interval_82091 chr18 67674191 67674612 + 0 NA intron (ENSMUSG00000024539.17, intron 8 of 8) protein_coding-intron (ENSMUSG00000024539.17, intron 8 of 9) 15823 ENSMUSG00000024539.17 ENSMUSG00000024539 ENSMUST00000128169 Ptpn2 protein_coding Interval_1462 chr1 23761453 23763937 + 0 NA exon (ENSMUSG00000026156.8, exon 1 of 4) protein_coding-exon (ENSMUSG00000026156.8, exon 1 of 4) 942 ENSMUSG00000026156.8 ENSMUSG00000026156 ENSMUST00000140583 B3gat2 protein_coding Interval_148353 chr7 80694663 80695177 + 0 NA Intergenic Intergenic -56902 ENSMUSG00000108321.1 ENSMUSG00000108321 ENSMUST00000205608 Gm44649 antisense Interval_132019 chr5 142325786 142326013 + 0 NA Intergenic Intergenic 42793 ENSMUSG00000097947.1 ENSMUSG00000097947 ENSMUST00000182990 Gm26970 processed_pseudogene Interval_137570 chr6 73334930 73335746 + 0 NA Intergenic Intergenic -24697 ENSMUSG00000107931.1 ENSMUSG00000107931 ENSMUST00000204041 Gm44475 processed_pseudogene Interval_101878 chr3 10350599 10351828 + 0 NA promoter-TSS (ENSMUSG00000039795.14) protein_coding-promoter-TSS (ENSMUSG00000039795.14) 104 ENSMUSG00000039795.14 ENSMUSG00000039795 ENSMUST00000127313 Zfand1 protein_coding Interval_5111 chr1 85743126 85744644 + 0 NA intron (ENSMUSG00000052760.16, intron 3 of 7) protein_coding-intron (ENSMUSG00000052760.16, intron 3 of 7) -7304 ENSMUSG00000052760.16 ENSMUSG00000052760 ENSMUST00000159325 A630001G21Rik protein_coding Interval_57387 chr15 10479583 10480201 + 0 NA intron (ENSMUSG00000022247.12, intron 4 of 6) protein_coding-intron (ENSMUSG00000022247.12, intron 3 of 9) 6017 ENSMUSG00000022247.12 ENSMUSG00000022247 ENSMUST00000168761 Brix1 protein_coding Interval_94939 chr2 102031826 102033207 + 0 NA intron (ENSMUSG00000048058.17, intron 4 of 5) protein_coding-intron (ENSMUSG00000048058.17, intron 4 of 5) -7113 ENSMUSG00000085417.1 ENSMUSG00000085417 ENSMUST00000123891 Gm13919 antisense Interval_109366 chr3 140156604 140157349 + 0 NA Intergenic Intergenic -12308 ENSMUSG00000106207.1 ENSMUSG00000106207 ENSMUST00000196798 Gm19184 processed_pseudogene Interval_39334 chr12 86793984 86794388 + 0 NA Intergenic Intergenic -15771 ENSMUSG00000088403.1 ENSMUSG00000088403 ENSMUST00000157778 Gm25888 misc_RNA Interval_45224 chr13 53273666 53274666 + 0 NA intron (ENSMUSG00000021464.14, intron 1 of 8) protein_coding-intron (ENSMUSG00000021464.14, intron 1 of 8) 1492 ENSMUSG00000021464.14 ENSMUSG00000021464 ENSMUST00000149299 Ror2 protein_coding Interval_153033 chr7 140983115 140984146 + 0 NA Intergenic Intergenic 9883 ENSMUSG00000110355.1 ENSMUSG00000110355 ENSMUST00000209475 Gm7514 processed_pseudogene Interval_95437 chr2 109325838 109326046 + 0 NA intron (ENSMUSG00000027115.14, intron 13 of 16) protein_coding-intron (ENSMUSG00000027115.14, intron 13 of 16) 33919 ENSMUSG00000027115.14 ENSMUSG00000027115 ENSMUST00000162515 Kif18a protein_coding Interval_137861 chr6 83004655 83005111 + 0 NA intron (ENSMUSG00000030041.9, intron 5 of 9) protein_coding-intron (ENSMUSG00000030041.9, intron 5 of 9) 13238 ENSMUSG00000107599.1 ENSMUSG00000107599 ENSMUST00000203285 Gm43981 TEC Interval_72202 chr17 28561187 28562301 + 0 NA promoter-TSS (ENSMUSG00000024225.5) protein_coding-promoter-TSS (ENSMUSG00000024225.5) -1033 ENSMUSG00000024225.5 ENSMUSG00000024225 ENSMUST00000114785 Clps protein_coding Interval_25530 chr11 49601015 49601286 + 0 NA Intergenic Intergenic -5225 ENSMUSG00000081791.1 ENSMUSG00000081791 ENSMUST00000120001 Gm12190 processed_pseudogene Interval_97748 chr2 143722876 143723480 + 0 NA intron (ENSMUSG00000027419.9, intron 5 of 11) protein_coding-intron (ENSMUSG00000027419.9, intron 5 of 11) 72787 ENSMUSG00000087115.7 ENSMUSG00000087115 ENSMUST00000156362 Pcsk2os2 antisense Interval_37142 chr12 58924195 58924660 + 0 NA promoter-TSS (ENSMUSG00000112649.1) transcribed_processed_pseudogene-promoter-TSS (ENSMUSG00000112649.1) 32 ENSMUSG00000112649.1 ENSMUSG00000112649 ENSMUST00000218395 Gm47647 transcribed_processed_pseudogene Interval_144323 chr7 24475181 24475514 + 0 NA exon (ENSMUSG00000046223.10, exon 7 of 7) protein_coding-exon (ENSMUSG00000046223.10, exon 7 of 7) 12847 ENSMUSG00000046223.10 ENSMUSG00000046223 ENSMUST00000206636 Plaur protein_coding Interval_130208 chr5 124951440 124951811 + 0 NA Intergenic Intergenic -51850 ENSMUSG00000037962.7 ENSMUSG00000037962 ENSMUST00000145946 Rflna protein_coding Interval_88446 chr2 5116920 5117583 + 0 NA Intergenic Intergenic -20525 ENSMUSG00000026676.7 ENSMUSG00000026676 ENSMUST00000027988 Ccdc3 protein_coding Interval_37764 chr12 71838515 71838897 + 0 NA intron (ENSMUSG00000034574.10, intron 1 of 14) protein_coding-intron (ENSMUSG00000034574.10, intron 1 of 25) 7628 ENSMUSG00000034574.10 ENSMUSG00000034574 ENSMUST00000221317 Daam1 protein_coding Interval_91114 chr2 35179607 35180268 + 0 NA TTS (ENSMUSG00000026878.17) protein_coding-TTS (ENSMUSG00000026878.17) 21039 ENSMUSG00000026878.17 ENSMUSG00000026878 ENSMUST00000126224 Rab14 protein_coding Interval_48624 chr13 100710594 100710937 + 0 NA intron (ENSMUSG00000069089.8, intron 7 of 10) protein_coding-intron (ENSMUSG00000069089.8, intron 8 of 11) 20135 ENSMUSG00000069089.8 ENSMUSG00000069089 ENSMUST00000225578 Cdk7 protein_coding Interval_150495 chr7 111186165 111186508 + 0 NA Intergenic Intergenic -63652 ENSMUSG00000110424.1 ENSMUSG00000110424 ENSMUST00000210340 1700012D14Rik processed_transcript Interval_112003 chr4 33152055 33152892 + 0 NA exon (ENSMUSG00000028280.9, exon 5 of 10) protein_coding-exon (ENSMUSG00000028280.9, exon 5 of 10) 19952 ENSMUSG00000028280.9 ENSMUSG00000028280 ENSMUST00000029947 Gabrr1 protein_coding Interval_4388 chr1 73681730 73682386 + 0 NA intron (ENSMUSG00000100301.6, intron 6 of 8) lincRNA-intron (ENSMUSG00000100301.6, intron 6 of 8) 61889 ENSMUSG00000100301.6 ENSMUSG00000100301 ENSMUST00000189514 6030407O03Rik lincRNA Interval_92505 chr2 60190939 60191380 + 0 NA intron (ENSMUSG00000026987.16, intron 1 of 3) protein_coding-intron (ENSMUSG00000026987.16, intron 1 of 3) -18754 ENSMUSG00000026977.17 ENSMUSG00000026977 ENSMUST00000136367 Marchf7 protein_coding Interval_136719 chr6 58546629 58547714 + 0 NA Intergenic Intergenic -25361 ENSMUSG00000107960.1 ENSMUSG00000107960 ENSMUST00000204999 Gm35077 lincRNA Interval_120862 chr4 151128349 151129610 + 0 NA intron (ENSMUSG00000014592.21, intron 11 of 24) protein_coding-intron (ENSMUSG00000014592.21, intron 11 of 23) 39409 ENSMUSG00000078491.2 ENSMUSG00000078491 ENSMUST00000105667 Gm13090 protein_coding Interval_42590 chr13 16097417 16098001 + 0 NA Intergenic Intergenic 52068 ENSMUSG00000113715.1 ENSMUSG00000113715 ENSMUST00000221903 Gm6562 processed_pseudogene Interval_20920 chr10 122018430 122019306 + 0 NA intron (ENSMUSG00000020121.15, intron 1 of 3) protein_coding-intron (ENSMUSG00000020121.15, intron 1 of 21) 28447 ENSMUSG00000020121.15 ENSMUSG00000020121 ENSMUST00000162710 Srgap1 protein_coding Interval_139152 chr6 96370005 96370687 + 0 NA intron (ENSMUSG00000059187.12, intron 2 of 4) protein_coding-intron (ENSMUSG00000059187.12, intron 1 of 3) 99185 ENSMUSG00000065239.1 ENSMUSG00000065239 ENSMUST00000083305 Gm22971 snRNA Interval_76653 chr17 83201399 83201587 + 0 NA Intergenic Intergenic -13799 ENSMUSG00000024247.14 ENSMUSG00000024247 ENSMUST00000168118 Pkdcc protein_coding Interval_108153 chr3 122023774 122024214 + 0 NA exon (ENSMUSG00000104869.1, exon 1 of 1) TEC-exon (ENSMUSG00000104869.1, exon 1 of 1) 164 ENSMUSG00000104869.1 ENSMUSG00000104869 ENSMUST00000197868 Gm42544 TEC Interval_113800 chr4 58839774 58840088 + 0 NA intron (ENSMUSG00000050812.18, intron 4 of 4) protein_coding-intron (ENSMUSG00000050812.18, intron 19 of 48) 4950 ENSMUSG00000050812.18 ENSMUSG00000050812 ENSMUST00000134848 Ecpas protein_coding Interval_114088 chr4 63342525 63342730 + 0 NA Intergenic Intergenic -1933 ENSMUSG00000039196.2 ENSMUSG00000039196 ENSMUST00000030044 Orm1 protein_coding Interval_87305 chr19 47509924 47511088 + 0 NA intron (ENSMUSG00000042694.17, intron 7 of 9) protein_coding-intron (ENSMUSG00000042694.17, intron 7 of 9) -2476 ENSMUSG00000097990.1 ENSMUSG00000097990 ENSMUST00000182109 Gm19557 antisense Interval_50505 chr14 14308763 14309761 + 0 NA Intergenic Intergenic -6151 ENSMUSG00000114510.1 ENSMUSG00000114510 ENSMUST00000224979 Gm48859 processed_pseudogene Interval_146494 chr7 46393105 46393391 + 0 NA Intergenic Intergenic -4400 ENSMUSG00000058975.7 ENSMUSG00000058975 ENSMUST00000160234 Kcnc1 protein_coding Interval_156299 chr8 47204775 47206531 + 0 NA intron (ENSMUSG00000038143.16, intron 2 of 5) protein_coding-intron (ENSMUSG00000038143.16, intron 1 of 3) 21513 ENSMUSG00000109606.1 ENSMUSG00000109606 ENSMUST00000211539 Gm45537 TEC Interval_166521 chr9 60430012 60430557 + 0 NA intron (ENSMUSG00000032289.15, intron 2 of 16) protein_coding-intron (ENSMUSG00000032289.15, intron 3 of 17) 10421 ENSMUSG00000088550.1 ENSMUSG00000088550 ENSMUST00000157925 Gm22099 snoRNA Interval_15150 chr10 42922448 42922678 + 0 NA intron (ENSMUSG00000044770.14, intron 3 of 5) protein_coding-intron (ENSMUSG00000044770.14, intron 3 of 8) -33766 ENSMUSG00000111086.1 ENSMUSG00000111086 ENSMUST00000214070 Gm48671 lincRNA Interval_18991 chr10 93607516 93609726 + 0 NA Intergenic Intergenic -10241 ENSMUSG00000111366.1 ENSMUSG00000111366 ENSMUST00000213334 Gm47156 lincRNA Interval_132639 chr5 146896894 146897729 + 0 NA Intergenic Intergenic -51346 ENSMUSG00000016503.18 ENSMUSG00000016503 ENSMUST00000133296 Gtf3a protein_coding Interval_124239 chr5 41883873 41885193 + 0 NA Intergenic Intergenic -6809 ENSMUSG00000098264.1 ENSMUSG00000098264 ENSMUST00000183685 Mir6414 miRNA Interval_173286 chrX 76361764 76363119 + 0 NA Intergenic Intergenic 5614 ENSMUSG00000082444.1 ENSMUSG00000082444 ENSMUST00000121225 Gm14709 processed_pseudogene Interval_90630 chr2 31571600 31573163 + 0 NA promoter-TSS (ENSMUSG00000026843.15) protein_coding-promoter-TSS (ENSMUSG00000026843.15) -433 ENSMUSG00000026843.15 ENSMUSG00000026843 ENSMUST00000132534 Fubp3 protein_coding Interval_112624 chr4 43668810 43669808 + 0 NA promoter-TSS (ENSMUSG00000043633.6) protein_coding-promoter-TSS (ENSMUSG00000043633.6) -164 ENSMUSG00000043633.6 ENSMUSG00000043633 ENSMUST00000134487 Fam221b protein_coding Interval_154916 chr8 25027333 25028478 + 0 NA intron (ENSMUSG00000037406.7, intron 8 of 8) protein_coding-intron (ENSMUSG00000037406.7, intron 8 of 8) 9512 ENSMUSG00000037406.7 ENSMUSG00000037406 ENSMUST00000176814 Htra4 protein_coding Interval_62207 chr15 88819020 88820004 + 0 NA promoter-TSS (ENSMUSG00000023272.4) protein_coding-promoter-TSS (ENSMUSG00000023272.4) -134 ENSMUSG00000023272.4 ENSMUSG00000023272 ENSMUST00000024042 Creld2 protein_coding Interval_14007 chr10 25418461 25419551 + 0 NA intron (ENSMUSG00000019978.16, intron 1 of 10) protein_coding-intron (ENSMUSG00000019978.16, intron 1 of 19) -2821 ENSMUSG00000112445.1 ENSMUSG00000112445 ENSMUST00000219193 Gm47830 processed_pseudogene Interval_48103 chr13 96029943 96031394 + 0 NA intron (ENSMUSG00000051111.16, intron 2 of 10) protein_coding-intron (ENSMUSG00000051111.16, intron 3 of 12) -40442 ENSMUSG00000051111.16 ENSMUSG00000051111 ENSMUST00000220740 Sv2c protein_coding Interval_9893 chr1 163865127 163865480 + 0 NA intron (ENSMUSG00000026585.13, intron 15 of 20) protein_coding-intron (ENSMUSG00000026585.13, intron 15 of 19) -64487 ENSMUSG00000026584.14 ENSMUSG00000026584 ENSMUST00000162920 Scyl3 protein_coding Interval_10552 chr1 171788437 171788814 + 0 NA intron (ENSMUSG00000015316.11, intron 4 of 4) protein_coding-intron (ENSMUSG00000015316.11, intron 4 of 6) 21470 ENSMUSG00000015316.11 ENSMUSG00000015316 ENSMUST00000163992 Slamf1 protein_coding Interval_84186 chr19 8594239 8595034 + 0 NA intron (ENSMUSG00000063796.9, intron 2 of 10) protein_coding-intron (ENSMUSG00000063796.9, intron 3 of 11) 3382 ENSMUSG00000063796.9 ENSMUSG00000063796 ENSMUST00000010251 Slc22a8 protein_coding Interval_163578 chr9 22321355 22322989 + 0 NA promoter-TSS (ENSMUSG00000094627.2) processed_pseudogene-promoter-TSS (ENSMUSG00000094627.2) -795 ENSMUSG00000094627.2 ENSMUSG00000094627 ENSMUST00000178676 Gm10182 processed_pseudogene Interval_39794 chr12 98408836 98409011 + 0 NA Intergenic Intergenic 39411 ENSMUSG00000113927.1 ENSMUSG00000113927 ENSMUST00000222069 5330409N07Rik TEC Interval_78013 chr18 6681277 6682506 + 0 NA Intergenic Intergenic 9426 ENSMUSG00000117620.1 ENSMUSG00000117620 ENSMUST00000234799 Gm50077 processed_pseudogene Interval_52317 chr14 44832927 44833620 + 0 NA intron (ENSMUSG00000115747.1, intron 3 of 3) lincRNA-intron (ENSMUSG00000115747.1, intron 3 of 3) 11387 ENSMUSG00000115747.1 ENSMUSG00000115747 ENSMUST00000226720 Gm49145 lincRNA Interval_22407 chr11 9749815 9750656 + 0 NA Intergenic Intergenic -12614 ENSMUSG00000081629.1 ENSMUSG00000081629 ENSMUST00000117907 Eif3s6-ps1 processed_pseudogene Interval_171640 chr9 119815431 119816127 + 0 NA intron (ENSMUSG00000034115.10, intron 3 of 26) protein_coding-intron (ENSMUSG00000034115.10, intron 3 of 26) 8081 ENSMUSG00000034115.10 ENSMUSG00000034115 ENSMUST00000070617 Scn11a protein_coding Interval_76188 chr17 76505997 76506518 + 0 NA Intergenic Intergenic -167062 ENSMUSG00000117598.1 ENSMUSG00000117598 ENSMUST00000234248 Gm50028 lincRNA Interval_151189 chr7 119220601 119220861 + 0 NA Intergenic Intergenic -36128 ENSMUSG00000066197.5 ENSMUSG00000066197 ENSMUST00000084650 Gpr139 protein_coding Interval_106216 chr3 94674559 94675346 + 0 NA Intergenic Intergenic -8851 ENSMUSG00000085006.7 ENSMUSG00000085006 ENSMUST00000126387 BC021767 transcribed_unprocessed_pseudogene Interval_148304 chr7 80383805 80384611 + 0 NA TTS (ENSMUSG00000053158.10) protein_coding-TTS (ENSMUSG00000053158.10) 3663 ENSMUSG00000053158.10 ENSMUSG00000053158 ENSMUST00000206271 Fes protein_coding Interval_25511 chr11 49386314 49387232 + 0 NA Intergenic Intergenic -17847 ENSMUSG00000084278.1 ENSMUSG00000084278 ENSMUST00000119779 Gm12189 processed_pseudogene Interval_32934 chr11 113220699 113221514 + 0 NA Intergenic Intergenic -11437 ENSMUSG00000085421.1 ENSMUSG00000085421 ENSMUST00000130373 4732490B19Rik lincRNA Interval_139453 chr6 100278581 100280237 + 0 NA intron (ENSMUSG00000072872.3, intron 1 of 1) protein_coding-intron (ENSMUSG00000072872.3, intron 2 of 4) -5711 ENSMUSG00000107690.1 ENSMUSG00000107690 ENSMUST00000205178 Gm44044 TEC Interval_119031 chr4 135089012 135089468 + 0 NA Intergenic Intergenic 31207 ENSMUSG00000086884.1 ENSMUSG00000086884 ENSMUST00000146152 Gm16225 lincRNA Interval_171143 chr9 114745854 114746116 + 0 NA intron (ENSMUSG00000032434.9, intron 3 of 3) protein_coding-intron (ENSMUSG00000032434.9, intron 3 of 3) 14869 ENSMUSG00000032434.9 ENSMUSG00000032434 ENSMUST00000035007 Cmtm6 protein_coding Interval_46199 chr13 62446808 62447095 + 0 NA Intergenic Intergenic 4658 ENSMUSG00000113841.1 ENSMUSG00000113841 ENSMUST00000221260 Gm48701 TEC Interval_82525 chr18 74929426 74929947 + 0 NA Intergenic Intergenic -6594 ENSMUSG00000117767.1 ENSMUSG00000117767 ENSMUST00000236784 Gm18786 processed_pseudogene Interval_5065 chr1 84753010 84753786 + 0 NA intron (ENSMUSG00000026219.14, intron 1 of 4) protein_coding-intron (ENSMUSG00000026219.14, intron 20 of 40) -24522 ENSMUSG00000026219.14 ENSMUSG00000026219 ENSMUST00000187818 Trip12 protein_coding Interval_86273 chr19 38320321 38321938 + 0 NA Intergenic Intergenic -5859 ENSMUSG00000105709.1 ENSMUSG00000105709 ENSMUST00000199966 Gm42723 antisense Interval_174376 chrX 150739033 150740122 + 0 NA Intergenic Intergenic -31962 ENSMUSG00000082961.1 ENSMUSG00000082961 ENSMUST00000119124 Gm15131 processed_pseudogene Interval_170550 chr9 108641284 108641694 + 0 NA intron (ENSMUSG00000064145.12, intron 3 of 6) protein_coding-intron (ENSMUSG00000064145.12, intron 3 of 15) -11345 ENSMUSG00000064145.12 ENSMUSG00000064145 ENSMUST00000195623 Arih2 protein_coding Interval_160489 chr8 109957049 109957960 + 0 NA intron (ENSMUSG00000001672.14, intron 2 of 2) protein_coding-intron (ENSMUSG00000001672.14, intron 2 of 2) 4549 ENSMUSG00000001672.14 ENSMUSG00000001672 ENSMUST00000155052 Marveld3 protein_coding Interval_51573 chr14 30429606 30431204 + 0 NA intron (ENSMUSG00000015968.18, intron 1 of 1) protein_coding-intron (ENSMUSG00000015968.18, intron 1 of 46) 7135 ENSMUSG00000114966.1 ENSMUSG00000114966 ENSMUST00000224520 Gm18681 processed_pseudogene Interval_147087 chr7 62382398 62382616 + 0 NA TTS (ENSMUSG00000056972.6) protein_coding-TTS (ENSMUSG00000056972.6) 5497 ENSMUSG00000056972.6 ENSMUSG00000056972 ENSMUST00000080403 Magel2 protein_coding Interval_139373 chr6 99600220 99600469 + 0 NA intron (ENSMUSG00000030068.4, intron 1 of 1) protein_coding-intron (ENSMUSG00000030068.4, intron 3 of 5) 24453 ENSMUSG00000084547.1 ENSMUSG00000084547 ENSMUST00000122598 Gm24936 misc_RNA Interval_123427 chr5 32439187 32439392 + 0 NA Intergenic Intergenic 19286 ENSMUSG00000107211.1 ENSMUSG00000107211 ENSMUST00000202263 Gm5864 processed_pseudogene Interval_87511 chr19 53148797 53149940 + 0 NA intron (ENSMUSG00000025026.15, intron 2 of 14) protein_coding-intron (ENSMUSG00000025026.15, intron 2 of 14) 8851 ENSMUSG00000025026.15 ENSMUSG00000025026 ENSMUST00000237153 Add3 protein_coding Interval_118294 chr4 130107168 130108142 + 0 NA promoter-TSS (ENSMUSG00000028779.16) protein_coding-promoter-TSS (ENSMUSG00000028779.16) 5097 ENSMUSG00000028779.16 ENSMUSG00000028779 ENSMUST00000030563 Pef1 protein_coding Interval_133017 chr5 149313081 149313712 + 0 NA Intergenic Intergenic -25528 ENSMUSG00000107317.1 ENSMUSG00000107317 ENSMUST00000200934 Gm19719 antisense Interval_150029 chr7 105171219 105171444 + 0 NA Intergenic Intergenic -7678 ENSMUSG00000047225.8 ENSMUSG00000047225 ENSMUST00000060893 Olfr684 protein_coding Interval_162123 chr8 125337925 125338195 + 0 NA Intergenic Intergenic -110737 ENSMUSG00000086694.1 ENSMUSG00000086694 ENSMUST00000156666 Gm16237 antisense Interval_4082 chr1 67650149 67650627 + 0 NA Intergenic Intergenic 33413 ENSMUSG00000095282.1 ENSMUSG00000095282 ENSMUST00000174899 Gm22548 miRNA Interval_141802 chr6 134611997 134612945 + 0 NA intron (ENSMUSG00000032718.4, intron 3 of 3) protein_coding-intron (ENSMUSG00000032718.4, intron 3 of 3) -4790 ENSMUSG00000107728.1 ENSMUSG00000107728 ENSMUST00000204630 Gm38910 lincRNA Interval_144185 chr7 19851739 19852924 + 0 NA intron (ENSMUSG00000014686.8, intron 2 of 2) protein_coding-intron (ENSMUSG00000014686.8, intron 5 of 5) 328 ENSMUSG00000092216.3 ENSMUSG00000092216 ENSMUST00000172815 Gm19345 protein_coding Interval_27254 chr11 64978593 64979635 + 0 NA promoter-TSS (ENSMUSG00000020549.14) protein_coding-promoter-TSS (ENSMUSG00000020549.14) 42 ENSMUSG00000020549.14 ENSMUSG00000020549 ENSMUST00000128693 Elac2 protein_coding Interval_90757 chr2 32328759 32329810 + 0 NA intron (ENSMUSG00000026825.17, intron 10 of 22) protein_coding-intron (ENSMUSG00000026825.17, intron 10 of 22) 10824 ENSMUSG00000092807.1 ENSMUSG00000092807 ENSMUST00000175066 Mir199b miRNA Interval_60008 chr15 63760291 63760530 + 0 NA exon (ENSMUSG00000115682.1, exon 1 of 1) processed_pseudogene-exon (ENSMUSG00000115682.1, exon 1 of 1) 249 ENSMUSG00000115682.1 ENSMUSG00000115682 ENSMUST00000226151 Gm46499 processed_pseudogene Interval_34623 chr12 8079841 8080092 + 0 NA intron (ENSMUSG00000112694.1, intron 2 of 3) antisense-intron (ENSMUSG00000112694.1, intron 2 of 3) 102318 ENSMUSG00000020609.14 ENSMUSG00000020609 ENSMUST00000171239 Apob protein_coding Interval_53396 chr14 56898769 56899280 + 0 NA intron (ENSMUSG00000021945.9, intron 2 of 2) protein_coding-intron (ENSMUSG00000021945.9, intron 1 of 23) 33611 ENSMUSG00000114500.1 ENSMUSG00000114500 ENSMUST00000224747 Gm8983 processed_pseudogene Interval_167996 chr9 75321924 75322167 + 0 NA intron (ENSMUSG00000110824.1, intron 2 of 2) protein_coding-intron (ENSMUSG00000032192.9, intron 2 of 11) -7174 ENSMUSG00000111348.1 ENSMUSG00000111348 ENSMUST00000216737 Gm19531 antisense Interval_104490 chr3 66650471 66651371 + 0 NA Intergenic Intergenic -87370 ENSMUSG00000103600.1 ENSMUSG00000103600 ENSMUST00000193914 Gm17952 processed_pseudogene Interval_58816 chr15 38282138 38284363 + 0 NA Intergenic Intergenic -6809 ENSMUSG00000115437.1 ENSMUSG00000115437 ENSMUST00000228508 Gm49314 TEC Interval_155878 chr8 40570126 40573540 + 0 NA intron (ENSMUSG00000039431.16, intron 7 of 11) protein_coding-intron (ENSMUSG00000039431.16, intron 7 of 14) 28409 ENSMUSG00000031600.11 ENSMUSG00000031600 ENSMUST00000238628 Vps37a protein_coding Interval_18230 chr10 83938757 83938949 + 0 NA Intergenic Intergenic 37001 ENSMUSG00000112133.1 ENSMUSG00000112133 ENSMUST00000217741 Gm47247 processed_pseudogene Interval_20015 chr10 111989294 111990528 + 0 NA intron (ENSMUSG00000056888.11, intron 3 of 6) protein_coding-intron (ENSMUSG00000056888.11, intron 2 of 5) 5904 ENSMUSG00000056888.11 ENSMUSG00000056888 ENSMUST00000174201 Glipr1 protein_coding Interval_168522 chr9 83028164 83028388 + 0 NA intron (ENSMUSG00000111839.1, intron 3 of 3) lincRNA-intron (ENSMUSG00000111839.1, intron 3 of 3) 19673 ENSMUSG00000111839.1 ENSMUSG00000111839 ENSMUST00000216894 Gm39383 lincRNA Interval_79246 chr18 27281732 27282729 + 0 NA Intergenic Intergenic -191043 ENSMUSG00000117646.1 ENSMUSG00000117646 ENSMUST00000234185 Gm49977 processed_pseudogene Interval_76092 chr17 74864813 74865016 + 0 NA Intergenic Intergenic -3980 ENSMUSG00000117441.1 ENSMUSG00000117441 ENSMUST00000234097 Gm50021 antisense Interval_35271 chr12 19303661 19304198 + 0 NA exon (ENSMUSG00000113959.1, exon 1 of 1) TEC-exon (ENSMUSG00000113959.1, exon 1 of 1) 2276 ENSMUSG00000113959.1 ENSMUSG00000113959 ENSMUST00000222720 Gm46339 TEC Interval_121649 chr5 4310059 4310286 + 0 NA Intergenic Intergenic 117805 ENSMUSG00000053178.5 ENSMUSG00000053178 ENSMUST00000177258 Mterf1b protein_coding Interval_161999 chr8 124346874 124347603 + 0 NA Intergenic Intergenic -10000 ENSMUSG00000064664.1 ENSMUSG00000064664 ENSMUST00000082730 Gm24459 snRNA Interval_135949 chr6 49042370 49043461 + 0 NA TTS (ENSMUSG00000029816.10) protein_coding-TTS (ENSMUSG00000029816.10) 6369 ENSMUSG00000029816.10 ENSMUSG00000029816 ENSMUST00000204460 Gpnmb protein_coding Interval_144568 chr7 26088216 26089072 + 0 NA exon (ENSMUSG00000040583.8, exon 8 of 9) protein_coding-exon (ENSMUSG00000040583.8, exon 8 of 9) 11672 ENSMUSG00000108342.1 ENSMUSG00000108342 ENSMUST00000206876 Gm29920 processed_pseudogene Interval_64329 chr16 10530856 10531132 + 0 NA intron (ENSMUSG00000038055.12, intron 1 of 1) protein_coding-intron (ENSMUSG00000038055.12, intron 1 of 1) 12060 ENSMUSG00000038055.12 ENSMUSG00000038055 ENSMUST00000038281 Dexi protein_coding Interval_47874 chr13 94062627 94063723 + 0 NA intron (ENSMUSG00000045312.12, intron 1 of 1) protein_coding-intron (ENSMUSG00000045312.12, intron 1 of 3) 9332 ENSMUSG00000114174.1 ENSMUSG00000114174 ENSMUST00000223240 Cycs-ps3 processed_pseudogene Interval_138811 chr6 92108282 92108504 + 0 NA intron (ENSMUSG00000005893.14, intron 2 of 14) protein_coding-intron (ENSMUSG00000005893.14, intron 1 of 14) -30223 ENSMUSG00000005893.14 ENSMUSG00000005893 ENSMUST00000204349 Nr2c2 protein_coding Interval_35433 chr12 21679988 21680497 + 0 NA Intergenic Intergenic -49792 ENSMUSG00000113498.1 ENSMUSG00000113498 ENSMUST00000220842 Gm4036 unprocessed_pseudogene Interval_134587 chr6 29777057 29777459 + 0 NA intron (ENSMUSG00000029772.17, intron 1 of 1) protein_coding-intron (ENSMUSG00000029772.17, intron 1 of 16) 26497 ENSMUSG00000081564.1 ENSMUSG00000081564 ENSMUST00000119868 Gm13717 processed_pseudogene Interval_52141 chr14 37068637 37069071 + 0 NA exon (ENSMUSG00000043418.4, exon 2 of 3) protein_coding-exon (ENSMUSG00000043418.4, exon 2 of 3) 925 ENSMUSG00000043418.4 ENSMUSG00000043418 ENSMUST00000057176 Lrit2 protein_coding Interval_78777 chr18 20577640 20578132 + 0 NA intron (ENSMUSG00000044393.15, intron 3 of 6) protein_coding-intron (ENSMUSG00000044393.15, intron 3 of 14) 19640 ENSMUSG00000044393.15 ENSMUSG00000044393 ENSMUST00000121837 Dsg2 protein_coding Interval_66912 chr16 38488598 38488856 + 0 NA intron (ENSMUSG00000075122.5, intron 6 of 6) protein_coding-intron (ENSMUSG00000075122.5, intron 6 of 6) -23838 ENSMUSG00000081605.1 ENSMUSG00000081605 ENSMUST00000117656 Gm15953 processed_pseudogene Interval_44074 chr13 40730593 40732143 + 0 NA promoter-TSS (ENSMUSG00000021359.16) protein_coding-promoter-TSS (ENSMUSG00000021359.16) -2424 ENSMUSG00000021359.16 ENSMUSG00000021359 ENSMUST00000224700 Tfap2a protein_coding Interval_45141 chr13 52628557 52629405 + 0 NA intron (ENSMUSG00000021457.14, intron 7 of 13) protein_coding-intron (ENSMUSG00000021457.14, intron 7 of 13) 45478 ENSMUSG00000021457.14 ENSMUSG00000021457 ENSMUST00000140339 Syk protein_coding Interval_126418 chr5 88311158 88311979 + 0 NA Intergenic Intergenic -5744 ENSMUSG00000064156.8 ENSMUSG00000064156 ENSMUST00000170832 Prol1 protein_coding Interval_57911 chr15 25354720 25354949 + 0 NA Intergenic Intergenic -22186 ENSMUSG00000115355.1 ENSMUSG00000115355 ENSMUST00000228450 4930445E18Rik lincRNA Interval_125721 chr5 73572006 73572245 + 0 NA Intergenic Intergenic 58187 ENSMUSG00000067206.3 ENSMUSG00000067206 ENSMUST00000152215 Lrrc66 protein_coding Interval_82067 chr18 67481607 67481986 + 0 NA Intergenic Intergenic 15933 ENSMUSG00000024533.17 ENSMUSG00000024533 ENSMUST00000226000 Spire1 protein_coding Interval_6335 chr1 106001967 106002716 + 0 NA intron (ENSMUSG00000038866.15, intron 2 of 12) protein_coding-intron (ENSMUSG00000038866.15, intron 2 of 13) -1796 ENSMUSG00000038866.15 ENSMUSG00000038866 ENSMUST00000131830 Zcchc2 protein_coding Interval_77881 chr18 5004705 5005846 + 0 NA intron (ENSMUSG00000024236.18, intron 1 of 37) protein_coding-intron (ENSMUSG00000024236.18, intron 1 of 37) -29891 ENSMUSG00000024236.18 ENSMUSG00000024236 ENSMUST00000129543 Svil protein_coding Interval_169148 chr9 94537110 94539026 + 0 NA promoter-TSS (ENSMUSG00000045414.7) protein_coding-promoter-TSS (ENSMUSG00000045414.7) 13 ENSMUSG00000045414.7 ENSMUSG00000045414 ENSMUST00000113028 Dipk2a protein_coding Interval_45324 chr13 54392056 54392662 + 0 NA Intergenic Intergenic 6975 ENSMUSG00000086137.1 ENSMUSG00000086137 ENSMUST00000124238 Gm16248 lincRNA Interval_134286 chr6 24585893 24586155 + 0 NA Intergenic Intergenic -8506 ENSMUSG00000107189.1 ENSMUSG00000107189 ENSMUST00000202403 Gm42689 processed_pseudogene Interval_137276 chr6 70967404 70967753 + 0 NA Intergenic Intergenic 11047 ENSMUSG00000055874.6 ENSMUSG00000055874 ENSMUST00000069634 Foxi3 protein_coding Interval_19208 chr10 95507388 95508748 + 0 NA Intergenic Intergenic -7545 ENSMUSG00000062981.5 ENSMUSG00000062981 ENSMUST00000218996 Mrpl42 protein_coding Interval_138088 chr6 85083611 85084998 + 0 NA Intergenic Intergenic -7931 ENSMUSG00000107409.1 ENSMUSG00000107409 ENSMUST00000204634 Gm43954 processed_pseudogene Interval_395 chr1 4864488 4864687 + 0 NA intron (ENSMUSG00000033813.15, intron 1 of 9) protein_coding-intron (ENSMUSG00000033813.15, intron 1 of 9) 6549 ENSMUSG00000033813.15 ENSMUSG00000033813 ENSMUST00000165720 Tcea1 protein_coding Interval_62802 chr15 97075372 97076363 + 0 NA Intergenic Intergenic -55916 ENSMUSG00000022464.14 ENSMUSG00000022464 ENSMUST00000230907 Slc38a4 protein_coding Interval_142341 chr6 140711777 140713283 + 0 NA Intergenic Intergenic -16754 ENSMUSG00000079264.1 ENSMUSG00000079264 ENSMUST00000111844 Gm11077 protein_coding Interval_152457 chr7 133099899 133100622 + 0 NA intron (ENSMUSG00000030970.16, intron 1 of 6) protein_coding-intron (ENSMUSG00000030970.16, intron 1 of 10) 20011 ENSMUSG00000110282.1 ENSMUSG00000110282 ENSMUST00000209529 B930086L07Rik TEC Interval_64150 chr16 8731671 8732551 + 0 NA intron (ENSMUSG00000022710.17, intron 2 of 31) protein_coding-intron (ENSMUSG00000022710.17, intron 1 of 30) -33579 ENSMUSG00000022710.17 ENSMUSG00000022710 ENSMUST00000159509 Usp7 protein_coding Interval_46600 chr13 67486679 67487029 + 0 NA Intergenic Intergenic -2642 ENSMUSG00000059839.9 ENSMUSG00000059839 ENSMUST00000223868 Zfp874b protein_coding Interval_82061 chr18 67432280 67432724 + 0 NA intron (ENSMUSG00000024527.10, intron 1 of 9) protein_coding-intron (ENSMUSG00000024527.10, intron 6 of 16) 3446 ENSMUSG00000024527.10 ENSMUSG00000024527 ENSMUST00000236810 Afg3l2 protein_coding Interval_161551 chr8 121134760 121135668 + 0 NA intron (ENSMUSG00000092329.1, intron 1 of 15) protein_coding-intron (ENSMUSG00000092329.1, intron 1 of 15) -5729 ENSMUSG00000103830.1 ENSMUSG00000103830 ENSMUST00000191778 Gm37609 TEC Interval_168019 chr9 75432521 75432752 + 0 NA Intergenic Intergenic -8888 ENSMUSG00000042487.6 ENSMUSG00000042487 ENSMUST00000213248 Leo1 protein_coding Interval_35338 chr12 20809830 20810095 + 0 NA intron (ENSMUSG00000099759.1, intron 1 of 1) processed_transcript-intron (ENSMUSG00000099759.1, intron 1 of 1) -5254 ENSMUSG00000101813.1 ENSMUSG00000101813 ENSMUST00000185966 Gm28503 transcribed_processed_pseudogene Interval_46074 chr13 60819279 60820025 + 0 NA Intergenic Intergenic -19802 ENSMUSG00000056728.6 ENSMUSG00000056728 ENSMUST00000223578 Ctsll3 protein_coding Interval_159133 chr8 90907743 90909450 + 0 NA promoter-TSS (ENSMUSG00000074171.2) TEC-promoter-TSS (ENSMUSG00000074171.2) -180 ENSMUSG00000074171.2 ENSMUSG00000074171 ENSMUST00000098517 Gm6658 TEC Interval_155522 chr8 34090375 34090591 + 0 NA TTS (ENSMUSG00000031516.11) protein_coding-TTS (ENSMUSG00000031516.11) 4555 ENSMUSG00000031516.11 ENSMUSG00000031516 ENSMUST00000143411 Dctn6 protein_coding Interval_139320 chr6 98799196 98799387 + 0 NA Intergenic Intergenic 41542 ENSMUSG00000107938.1 ENSMUSG00000107938 ENSMUST00000203053 Gm32308 processed_pseudogene Interval_63907 chr16 4512646 4512995 + 0 NA intron (ENSMUSG00000022519.14, intron 1 of 1) protein_coding-intron (ENSMUSG00000022519.14, intron 1 of 1) -26488 ENSMUSG00000083585.1 ENSMUSG00000083585 ENSMUST00000122114 Gm15885 processed_pseudogene Interval_1623 chr1 30302400 30303078 + 0 NA Intergenic Intergenic 30658 ENSMUSG00000098883.1 ENSMUSG00000098883 ENSMUST00000184585 Gm27430 miRNA Interval_122103 chr5 17056970 17057674 + 0 NA Intergenic Intergenic 76286 ENSMUSG00000105706.1 ENSMUSG00000105706 ENSMUST00000197388 Gm42855 processed_pseudogene Interval_54924 chr14 76275933 76277282 + 0 NA Intergenic Intergenic 25150 ENSMUSG00000115625.1 ENSMUSG00000115625 ENSMUST00000227933 2900040C04Rik lincRNA Interval_142373 chr6 141117906 141118494 + 0 NA Intergenic Intergenic -19847 ENSMUSG00000107462.1 ENSMUSG00000107462 ENSMUST00000203682 Gm7384 processed_pseudogene Interval_79959 chr18 36274286 36275398 + 0 NA Intergenic Intergenic -6255 ENSMUSG00000043991.5 ENSMUSG00000043991 ENSMUST00000051301 Pura protein_coding Interval_145692 chr7 37464389 37464790 + 0 NA TTS (ENSMUSG00000108790.1) TEC-TTS (ENSMUSG00000108790.1) 2833 ENSMUSG00000108790.1 ENSMUSG00000108790 ENSMUST00000205574 Gm44806 TEC Interval_138922 chr6 93566779 93567131 + 0 NA Intergenic Intergenic 57382 ENSMUSG00000088630.1 ENSMUSG00000088630 ENSMUST00000158005 Gm22312 snoRNA Interval_35015 chr12 16669225 16669484 + 0 NA Intergenic Intergenic -2886 ENSMUSG00000114049.1 ENSMUSG00000114049 ENSMUST00000223113 Gm48140 antisense Interval_154086 chr8 12564267 12564848 + 0 NA intron (ENSMUSG00000097421.2, intron 1 of 1) bidirectional_promoter_lncRNA-intron (ENSMUSG00000097421.2, intron 1 of 1) -8472 ENSMUSG00000010435.7 ENSMUSG00000010435 ENSMUST00000209428 Spaca7 protein_coding Interval_41161 chr12 111560358 111560584 + 0 NA Intergenic Intergenic -1461 ENSMUSG00000113462.1 ENSMUSG00000113462 ENSMUST00000220847 Gm48248 processed_pseudogene Interval_17926 chr10 80861909 80862121 + 0 NA promoter-TSS (ENSMUSG00000035206.10) protein_coding-promoter-TSS (ENSMUSG00000035206.10) 4894 ENSMUSG00000035206.10 ENSMUSG00000035206 ENSMUST00000219136 Sppl2b protein_coding Interval_112912 chr4 45972016 45973082 + 0 NA promoter-TSS (ENSMUSG00000035517.17) protein_coding-promoter-TSS (ENSMUSG00000035517.17) -53552 ENSMUSG00000035517.17 ENSMUSG00000035517 ENSMUST00000155936 Tdrd7 protein_coding Interval_52033 chr14 34730667 34731044 + 0 NA intron (ENSMUSG00000041408.18, intron 10 of 19) protein_coding-intron (ENSMUSG00000041408.18, intron 10 of 18) -6416 ENSMUSG00000041408.18 ENSMUSG00000041408 ENSMUST00000174559 Wapl protein_coding Interval_70680 chr17 12988100 12988401 + 0 NA intron (ENSMUSG00000060475.13, intron 1 of 5) protein_coding-intron (ENSMUSG00000060475.13, intron 1 of 7) 5919 ENSMUSG00000060475.13 ENSMUSG00000060475 ENSMUST00000233467 Wtap protein_coding Interval_140501 chr6 118861592 118862390 + 0 NA intron (ENSMUSG00000051331.16, intron 3 of 47) protein_coding-intron (ENSMUSG00000051331.16, intron 3 of 46) 27091 ENSMUSG00000089115.1 ENSMUSG00000089115 ENSMUST00000158490 Gm25905 snRNA Interval_138323 chr6 87206431 87206618 + 0 NA intron (ENSMUSG00000033420.12, intron 6 of 6) protein_coding-intron (ENSMUSG00000033420.12, intron 13 of 17) -32515 ENSMUSG00000107436.1 ENSMUSG00000107436 ENSMUST00000204055 Gm44416 TEC Interval_63836 chr16 3883538 3885141 + 0 NA promoter-TSS (ENSMUSG00000005982.14) protein_coding-promoter-TSS (ENSMUSG00000005982.14) -309 ENSMUSG00000093575.1 ENSMUSG00000093575 ENSMUST00000146935 Gm20695 protein_coding Interval_147610 chr7 69642002 69642221 + 0 NA Intergenic Intergenic -35271 ENSMUSG00000098246.1 ENSMUSG00000098246 ENSMUST00000183205 Gm7627 processed_pseudogene Interval_50989 chr14 21516651 21517418 + 0 NA TTS (ENSMUSG00000021767.19) protein_coding-TTS (ENSMUSG00000021767.19) 159 ENSMUSG00000021767.19 ENSMUSG00000021767 ENSMUST00000226589 Kat6b protein_coding Interval_36562 chr12 49836998 49837368 + 0 NA Intergenic Intergenic 4568 ENSMUSG00000098219.1 ENSMUSG00000098219 ENSMUST00000182020 Gm7481 processed_pseudogene Interval_109797 chr3 147201905 147202189 + 0 NA Intergenic Intergenic -9129 ENSMUSG00000103099.1 ENSMUSG00000103099 ENSMUST00000193340 Gm6074 processed_pseudogene Interval_160883 chr8 114550022 114550344 + 0 NA intron (ENSMUSG00000004637.15, intron 5 of 8) protein_coding-intron (ENSMUSG00000004637.15, intron 5 of 8) 44717 ENSMUSG00000090217.1 ENSMUSG00000090217 ENSMUST00000159472 Gm16116 antisense Interval_82671 chr18 75829492 75829752 + 0 NA intron (ENSMUSG00000044646.15, intron 1 of 5) protein_coding-intron (ENSMUSG00000044646.15, intron 1 of 4) 9407 ENSMUSG00000044646.15 ENSMUSG00000044646 ENSMUST00000167921 Zbtb7c protein_coding Interval_136493 chr6 54925652 54926570 + 0 NA intron (ENSMUSG00000038058.14, intron 11 of 11) protein_coding-intron (ENSMUSG00000038058.14, intron 11 of 11) 13740 ENSMUSG00000038058.14 ENSMUSG00000038058 ENSMUST00000203837 Nod1 protein_coding Interval_168610 chr9 84127572 84127856 + 0 NA Intergenic Intergenic -60641 ENSMUSG00000077666.1 ENSMUSG00000077666 ENSMUST00000104478 Gm26146 snRNA Interval_28915 chr11 79247408 79247898 + 0 NA intron (ENSMUSG00000017677.11, intron 2 of 4) protein_coding-intron (ENSMUSG00000017677.11, intron 3 of 8) -4704 ENSMUSG00000017677.11 ENSMUSG00000017677 ENSMUST00000137890 Wsb1 protein_coding Interval_104324 chr3 63386978 63387511 + 0 NA Intergenic Intergenic -52007 ENSMUSG00000104336.1 ENSMUSG00000104336 ENSMUST00000192500 Gm34240 lincRNA Interval_91004 chr2 34121099 34121667 + 0 NA Intergenic Intergenic -9939 ENSMUSG00000103413.1 ENSMUSG00000103413 ENSMUST00000147871 Gm38389 lincRNA Interval_40603 chr12 105967585 105968683 + 0 NA Intergenic Intergenic -57673 ENSMUSG00000021115.15 ENSMUSG00000021115 ENSMUST00000220629 Vrk1 protein_coding Interval_44912 chr13 49705532 49706558 + 0 NA promoter-TSS (ENSMUSG00000037851.13) protein_coding-promoter-TSS (ENSMUSG00000037851.13) -8074 ENSMUSG00000077360.1 ENSMUSG00000077360 ENSMUST00000104172 Gm23482 snoRNA Interval_120493 chr4 148951513 148953067 + 0 NA exon (ENSMUSG00000028977.17, exon 21 of 21) protein_coding-exon (ENSMUSG00000028977.17, exon 21 of 21) -3376 ENSMUSG00000086606.1 ENSMUSG00000086606 ENSMUST00000123548 Gm13205 antisense Interval_80315 chr18 39123321 39123538 + 0 NA intron (ENSMUSG00000036452.18, intron 8 of 22) protein_coding-intron (ENSMUSG00000036452.18, intron 8 of 22) -129237 ENSMUSG00000086991.1 ENSMUSG00000086991 ENSMUST00000131421 Gm15334 antisense Interval_39925 chr12 99833498 99834060 + 0 NA intron (ENSMUSG00000113147.1, intron 3 of 3) protein_coding-intron (ENSMUSG00000021176.6, intron 5 of 5) -1560 ENSMUSG00000113540.1 ENSMUSG00000113540 ENSMUST00000222111 Gm47206 TEC Interval_49127 chr13 108297339 108298089 + 0 NA Intergenic Intergenic 13036 ENSMUSG00000114607.1 ENSMUSG00000114607 ENSMUST00000225465 Gm8990 processed_pseudogene Interval_50074 chr14 7822678 7823008 + 0 NA intron (ENSMUSG00000025278.9, intron 1 of 45) protein_coding-intron (ENSMUSG00000025278.9, intron 1 of 45) 21635 ENSMUSG00000049460.7 ENSMUSG00000049460 ENSMUST00000057361 Gm8396 processed_pseudogene Interval_10549 chr1 171728517 171729314 + 0 NA promoter-TSS (ENSMUSG00000104440.1) processed_pseudogene-promoter-TSS (ENSMUSG00000104440.1) -1000 ENSMUSG00000104440.1 ENSMUSG00000104440 ENSMUST00000194947 Gm19030 processed_pseudogene Interval_75832 chr17 71681824 71682029 + 0 NA intron (ENSMUSG00000045761.16, intron 1 of 2) protein_coding-intron (ENSMUSG00000045761.16, intron 1 of 19) -2879 ENSMUSG00000045761.16 ENSMUSG00000045761 ENSMUST00000129072 Togaram2 protein_coding Interval_147326 chr7 65865735 65866017 + 0 NA intron (ENSMUSG00000030513.14, intron 1 of 19) protein_coding-intron (ENSMUSG00000030513.14, intron 1 of 21) -3884 ENSMUSG00000093405.1 ENSMUSG00000093405 ENSMUST00000176744 Gm20684 bidirectional_promoter_lncRNA Interval_46403 chr13 64648609 64649712 + 0 NA Intergenic Intergenic -24400 ENSMUSG00000113753.1 ENSMUSG00000113753 ENSMUST00000220840 Gm5791 processed_pseudogene Interval_113574 chr4 56780635 56780877 + 0 NA intron (ENSMUSG00000028431.11, intron 14 of 36) protein_coding-intron (ENSMUSG00000028431.11, intron 14 of 36) -18715 ENSMUSG00000080370.1 ENSMUSG00000080370 ENSMUST00000116720 Gm22952 snoRNA Interval_146801 chr7 51861266 51862932 + 0 NA promoter-TSS (ENSMUSG00000030498.15) protein_coding-promoter-TSS (ENSMUSG00000030498.15) 168 ENSMUSG00000092118.1 ENSMUSG00000092118 ENSMUST00000169357 Fancf protein_coding Interval_56802 chr14 122180559 122182051 + 0 NA promoter-TSS (ENSMUSG00000025545.10) protein_coding-promoter-TSS (ENSMUSG00000025545.10) 52349 ENSMUSG00000100585.1 ENSMUSG00000100585 ENSMUST00000187423 1700108J01Rik antisense Interval_94585 chr2 92446158 92446362 + 0 NA Intergenic Intergenic 13449 ENSMUSG00000049922.8 ENSMUSG00000049922 ENSMUST00000136718 Slc35c1 protein_coding Interval_19169 chr10 95264432 95265291 + 0 NA intron (ENSMUSG00000045867.10, intron 2 of 2) protein_coding-intron (ENSMUSG00000045867.10, intron 2 of 2) 49992 ENSMUSG00000112744.1 ENSMUSG00000112744 ENSMUST00000219461 Gm48880 TEC Interval_94377 chr2 90614850 90615071 + 0 NA Intergenic Intergenic -34313 ENSMUSG00000025314.16 ENSMUSG00000025314 ENSMUST00000168621 Ptprj protein_coding Interval_51433 chr14 27464335 27464580 + 0 NA exon (ENSMUSG00000040651.9, exon 1 of 1) protein_coding-exon (ENSMUSG00000040651.9, exon 1 of 1) -12713 ENSMUSG00000040651.9 ENSMUSG00000040651 ENSMUST00000225139 Tasor protein_coding Interval_16387 chr10 62675474 62675667 + 0 NA intron (ENSMUSG00000036923.12, intron 1 of 3) protein_coding-intron (ENSMUSG00000036923.12, intron 2 of 3) 5767 ENSMUSG00000112901.1 ENSMUSG00000112901 ENSMUST00000218980 Gm18514 processed_pseudogene Interval_45971 chr13 59710177 59710959 + 0 NA promoter-TSS (ENSMUSG00000050876.9) protein_coding-promoter-TSS (ENSMUSG00000050876.9) -1716 ENSMUSG00000091311.3 ENSMUSG00000091311 ENSMUST00000165133 Spata31d1b protein_coding Interval_50467 chr14 13770524 13771213 + 0 NA Intergenic Intergenic 7283 ENSMUSG00000098694.1 ENSMUSG00000098694 ENSMUST00000184558 Gm27506 miRNA Interval_136734 chr6 58752511 58753368 + 0 NA Intergenic Intergenic 28998 ENSMUSG00000108164.1 ENSMUSG00000108164 ENSMUST00000203675 Gm43899 processed_pseudogene Interval_22861 chr11 16830659 16831016 + 0 NA promoter-TSS (ENSMUSG00000085091.1) antisense-promoter-TSS (ENSMUSG00000085091.1) -135 ENSMUSG00000085091.1 ENSMUSG00000085091 ENSMUST00000150329 Egfros antisense Interval_118381 chr4 130996747 130997198 + 0 NA intron (ENSMUSG00000085804.1, intron 3 of 3) lincRNA-intron (ENSMUSG00000085804.1, intron 3 of 3) 13502 ENSMUSG00000086262.7 ENSMUSG00000086262 ENSMUST00000153810 A930031H19Rik lincRNA Interval_21571 chr10 130096297 130096522 + 0 NA Intergenic Intergenic -2565 ENSMUSG00000108253.1 ENSMUSG00000108253 ENSMUST00000204175 Olfr1542-ps1 unprocessed_pseudogene Interval_63773 chr15 103343716 103343997 + 0 NA TTS (ENSMUSG00000000555.8) protein_coding-TTS (ENSMUSG00000000555.8) 6669 ENSMUSG00000098419.1 ENSMUSG00000098419 ENSMUST00000183535 Mir6963 miRNA Interval_117817 chr4 126388522 126388919 + 0 NA intron (ENSMUSG00000028842.15, intron 2 of 3) protein_coding-intron (ENSMUSG00000028842.15, intron 5 of 18) 15615 ENSMUSG00000028842.15 ENSMUSG00000028842 ENSMUST00000123233 Ago3 protein_coding Interval_167163 chr9 65740639 65741667 + 0 NA intron (ENSMUSG00000040524.9, intron 2 of 9) protein_coding-intron (ENSMUSG00000040524.9, intron 2 of 9) 56759 ENSMUSG00000040524.9 ENSMUSG00000040524 ENSMUST00000160747 Zfp609 protein_coding Interval_128697 chr5 114786742 114787717 + 0 NA intron (ENSMUSG00000041870.16, intron 2 of 12) protein_coding-intron (ENSMUSG00000041870.16, intron 3 of 14) -12246 ENSMUSG00000092183.1 ENSMUSG00000092183 ENSMUST00000173208 4930515G01Rik antisense Interval_42770 chr13 19282864 19283346 + 0 NA Intergenic Intergenic 22220 ENSMUSG00000091682.2 ENSMUSG00000091682 ENSMUST00000198163 Trgc3 TR_C_gene Interval_166093 chr9 56562339 56562638 + 0 NA Intergenic Intergenic 18732 ENSMUSG00000111201.1 ENSMUSG00000111201 ENSMUST00000216151 Gm47178 processed_pseudogene Interval_172374 chrX 14641084 14641308 + 0 NA Intergenic Intergenic -155539 ENSMUSG00000084907.1 ENSMUSG00000084907 ENSMUST00000145383 Gm14505 lincRNA Interval_16021 chr10 60165931 60166796 + 0 NA Intergenic Intergenic 27876 ENSMUSG00000057337.13 ENSMUSG00000057337 ENSMUST00000167915 Chst3 protein_coding Interval_65045 chr16 18681627 18682473 + 0 NA exon (ENSMUSG00000116825.1, exon 1 of 1) processed_pseudogene-exon (ENSMUSG00000116825.1, exon 1 of 1) 166 ENSMUSG00000116825.1 ENSMUSG00000116825 ENSMUST00000231787 Rps2-ps7 processed_pseudogene Interval_48354 chr13 98440756 98441276 + 0 NA Intergenic Intergenic -5951 ENSMUSG00000099446.1 ENSMUSG00000099446 ENSMUST00000186644 2310005E17Rik lincRNA Interval_173516 chrX 97604054 97604366 + 0 NA Intergenic Intergenic -222169 ENSMUSG00000081923.1 ENSMUSG00000081923 ENSMUST00000117712 Gm9062 processed_pseudogene Interval_70296 chr17 8301280 8301804 + 0 NA intron (ENSMUSG00000087478.1, intron 1 of 4) processed_transcript-intron (ENSMUSG00000087478.1, intron 1 of 1) 9510 ENSMUSG00000087478.1 ENSMUSG00000087478 ENSMUST00000123341 4930506C21Rik processed_transcript Interval_50297 chr14 11714998 11715218 + 0 NA intron (ENSMUSG00000021745.14, intron 1 of 3) protein_coding-intron (ENSMUSG00000021745.14, intron 1 of 29) -52835 ENSMUSG00000114310.1 ENSMUSG00000114310 ENSMUST00000225152 Gm48602 TEC Interval_46685 chr13 69158392 69159408 + 0 NA Intergenic Intergenic 17671 ENSMUSG00000097522.1 ENSMUSG00000097522 ENSMUST00000181690 Gm26844 lincRNA Interval_4852 chr1 80249883 80250169 + 0 NA Intergenic Intergenic 6171 ENSMUSG00000103404.1 ENSMUSG00000103404 ENSMUST00000192258 Gm37932 TEC Interval_37662 chr12 70909990 70912229 + 0 NA intron (ENSMUSG00000113584.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000113584.1, intron 1 of 1) 1042 ENSMUSG00000113584.1 ENSMUSG00000113584 ENSMUST00000221434 Gm46355 lincRNA Interval_41782 chr12 119068076 119068626 + 0 NA promoter-TSS (ENSMUSG00000114030.1) processed_pseudogene-promoter-TSS (ENSMUSG00000114030.1) -921 ENSMUSG00000114030.1 ENSMUSG00000114030 ENSMUST00000221798 Gm18921 processed_pseudogene Interval_34958 chr12 15507806 15508226 + 0 NA Intergenic Intergenic 24973 ENSMUSG00000113069.1 ENSMUSG00000113069 ENSMUST00000222638 Gm48541 processed_pseudogene Interval_77097 chr17 86518575 86518975 + 0 NA intron (ENSMUSG00000045038.14, intron 10 of 14) protein_coding-intron (ENSMUSG00000045038.14, intron 11 of 15) -13543 ENSMUSG00000071036.2 ENSMUSG00000071036 ENSMUST00000095186 Gm10309 protein_coding Interval_161840 chr8 123133114 123133344 + 0 NA intron (ENSMUSG00000034796.14, intron 12 of 13) protein_coding-intron (ENSMUSG00000034796.14, intron 13 of 14) 3123 ENSMUSG00000098582.1 ENSMUSG00000098582 ENSMUST00000184815 Mir7080 miRNA Interval_102623 chr3 28626305 28627109 + 0 NA intron (ENSMUSG00000027692.16, intron 20 of 31) protein_coding-intron (ENSMUSG00000027692.16, intron 19 of 30) -94810 ENSMUSG00000027690.13 ENSMUSG00000027690 ENSMUST00000169047 Slc2a2 protein_coding Interval_119934 chr4 141010657 141011070 + 0 NA intron (ENSMUSG00000060572.17, intron 1 of 6) protein_coding-intron (ENSMUSG00000060572.17, intron 1 of 8) 445 ENSMUSG00000060572.17 ENSMUSG00000060572 ENSMUST00000071977 Mfap2 protein_coding Interval_156006 chr8 41889538 41889923 + 0 NA intron (ENSMUSG00000102046.1, intron 3 of 5) lincRNA-intron (ENSMUSG00000102046.1, intron 3 of 5) -33790 ENSMUSG00000108069.1 ENSMUSG00000108069 ENSMUST00000203513 Hspd1-ps1 processed_pseudogene Interval_12238 chr1 191054789 191055707 + 0 NA exon (ENSMUSG00000026632.17, exon 3 of 3) protein_coding-exon (ENSMUSG00000026632.17, exon 3 of 3) 7656 ENSMUSG00000026632.17 ENSMUSG00000026632 ENSMUST00000156527 Tatdn3 protein_coding Interval_106375 chr3 95734098 95736764 + 0 NA promoter-TSS (ENSMUSG00000028108.15) protein_coding-promoter-TSS (ENSMUSG00000028108.15) -458 ENSMUSG00000098737.1 ENSMUSG00000098737 ENSMUST00000183853 Mir7014 miRNA Interval_66066 chr16 31387886 31388884 + 0 NA Intergenic Intergenic -9252 ENSMUSG00000101234.1 ENSMUSG00000101234 ENSMUST00000190494 1700007E05Rik transcribed_processed_pseudogene Interval_117141 chr4 119947068 119948215 + 0 NA intron (ENSMUSG00000028634.17, intron 1 of 1) protein_coding-intron (ENSMUSG00000028634.17, intron 1 of 8) -85125 ENSMUSG00000028634.17 ENSMUSG00000028634 ENSMUST00000166542 Hivep3 protein_coding Interval_30329 chr11 93662531 93663077 + 0 NA Intergenic Intergenic 12045 ENSMUSG00000082453.1 ENSMUSG00000082453 ENSMUST00000120917 Gm11502 processed_pseudogene Interval_84131 chr19 7403802 7405246 + 0 NA Intergenic Intergenic -1093 ENSMUSG00000118297.1 ENSMUSG00000118297 ENSMUST00000235684 Gm18842 processed_pseudogene Interval_18879 chr10 92097804 92099272 + 0 NA intron (ENSMUSG00000112117.1, intron 7 of 9) lincRNA-intron (ENSMUSG00000112117.1, intron 1 of 4) 3389 ENSMUSG00000098664.1 ENSMUSG00000098664 ENSMUST00000185096 Gm27588 misc_RNA Interval_121069 chr4 152562465 152562715 + 0 NA intron (ENSMUSG00000039577.17, intron 28 of 28) protein_coding-intron (ENSMUSG00000039577.17, intron 28 of 28) 84412 ENSMUSG00000039577.17 ENSMUSG00000039577 ENSMUST00000123635 Nphp4 protein_coding Interval_19634 chr10 106469008 106470882 + 0 NA promoter-TSS (ENSMUSG00000053825.15) protein_coding-promoter-TSS (ENSMUSG00000053825.15) 25548 ENSMUSG00000112066.1 ENSMUSG00000112066 ENSMUST00000217782 Gm48380 processed_pseudogene Interval_42763 chr13 19192707 19193131 + 0 NA TTS (ENSMUSG00000076747.3) TR_V_gene-TTS (ENSMUSG00000076747.3) 639 ENSMUSG00000105715.1 ENSMUSG00000105715 ENSMUST00000197661 Gm31887 antisense Interval_88569 chr2 6225400 6225625 + 0 NA intron (ENSMUSG00000087125.1, intron 1 of 6) antisense-intron (ENSMUSG00000087125.1, intron 1 of 6) -29304 ENSMUSG00000039063.5 ENSMUSG00000039063 ENSMUST00000114941 Echdc3 protein_coding Interval_1539 chr1 25066753 25066964 + 0 NA TTS (ENSMUSG00000033569.17) protein_coding-TTS (ENSMUSG00000033569.17) -39626 ENSMUSG00000099392.1 ENSMUSG00000099392 ENSMUST00000185379 Gm29414 lincRNA Interval_72076 chr17 27865462 27866045 + 0 NA intron (ENSMUSG00000039512.12, intron 1 of 5) protein_coding-intron (ENSMUSG00000039512.12, intron 1 of 20) 3225 ENSMUSG00000117161.1 ENSMUSG00000117161 ENSMUST00000233253 Gm49803 processed_pseudogene Interval_40417 chr12 104741330 104741601 + 0 NA intron (ENSMUSG00000041415.10, intron 1 of 26) protein_coding-intron (ENSMUSG00000041415.10, intron 1 of 26) -19413 ENSMUSG00000041415.10 ENSMUSG00000041415 ENSMUST00000222002 Dicer1 protein_coding Interval_79349 chr18 30896214 30897165 + 0 NA Intergenic Intergenic -287799 ENSMUSG00000117526.1 ENSMUSG00000117526 ENSMUST00000235078 Gm41780 processed_pseudogene Interval_143784 chr7 16294500 16295868 + 0 NA Intergenic Intergenic -9648 ENSMUSG00000041375.18 ENSMUSG00000041375 ENSMUST00000145519 Ccdc9 protein_coding Interval_36101 chr12 35831869 35832359 + 0 NA Intergenic Intergenic -12850 ENSMUSG00000114090.1 ENSMUSG00000114090 ENSMUST00000221625 Gm9472 processed_pseudogene Interval_11390 chr1 181535219 181535708 + 0 NA Intergenic Intergenic -24012 ENSMUSG00000050625.4 ENSMUSG00000050625 ENSMUST00000058825 Ccdc121 protein_coding Interval_101166 chr2 178716118 178716453 + 0 NA Intergenic Intergenic 255655 ENSMUSG00000039155.15 ENSMUSG00000039155 ENSMUST00000176869 Cdh26 protein_coding Interval_132672 chr5 147066073 147067410 + 0 NA intron (ENSMUSG00000016520.7, intron 1 of 9) protein_coding-intron (ENSMUSG00000016520.7, intron 1 of 9) -10823 ENSMUSG00000029642.11 ENSMUSG00000029642 ENSMUST00000196288 Polr1d protein_coding Interval_94150 chr2 84705248 84705560 + 0 NA intron (ENSMUSG00000034075.10, intron 2 of 11) protein_coding-intron (ENSMUSG00000034075.10, intron 2 of 11) 2142 ENSMUSG00000099206.1 ENSMUSG00000099206 ENSMUST00000184669 Gm27942 snRNA Interval_106497 chr3 96704797 96705053 + 0 NA exon (ENSMUSG00000028101.18, exon 14 of 14) protein_coding-exon (ENSMUSG00000028101.18, exon 14 of 14) 3622 ENSMUSG00000028100.11 ENSMUSG00000028100 ENSMUST00000029742 Nudt17 protein_coding Interval_116536 chr4 115101028 115102086 + 0 NA Intergenic Intergenic 12849 ENSMUSG00000028716.15 ENSMUSG00000028716 ENSMUST00000146578 Pdzk1ip1 protein_coding Interval_72724 chr17 31767173 31767379 + 0 NA Intergenic Intergenic -22250 ENSMUSG00000117355.1 ENSMUSG00000117355 ENSMUST00000234824 Gm49999 lincRNA Interval_103647 chr3 51386649 51387488 + 0 NA TTS (ENSMUSG00000102544.1) lincRNA-TTS (ENSMUSG00000102544.1) 8992 ENSMUSG00000102544.1 ENSMUSG00000102544 ENSMUST00000195545 Gm5103 lincRNA Interval_8912 chr1 152076339 152076657 + 0 NA intron (ENSMUSG00000032666.16, intron 1 of 6) protein_coding-intron (ENSMUSG00000032666.16, intron 1 of 5) 13472 ENSMUSG00000032666.16 ENSMUSG00000032666 ENSMUST00000121533 1700025G04Rik protein_coding Interval_90206 chr2 29029748 29030339 + 0 NA intron (ENSMUSG00000079502.8, intron 1 of 6) protein_coding-intron (ENSMUSG00000079502.8, intron 1 of 5) 9317 ENSMUSG00000079502.8 ENSMUSG00000079502 ENSMUST00000113843 Cfap77 protein_coding Interval_136378 chr6 53967443 53969359 + 0 NA intron (ENSMUSG00000052955.5, intron 2 of 12) protein_coding-intron (ENSMUSG00000052955.5, intron 2 of 12) 10261 ENSMUSG00000052955.5 ENSMUSG00000052955 ENSMUST00000166545 Cpvl protein_coding Interval_173199 chrX 74030309 74030629 + 0 NA exon (ENSMUSG00000031393.16, exon 4 of 4) protein_coding-exon (ENSMUSG00000031393.16, exon 4 of 4) -6533 ENSMUSG00000076127.1 ENSMUSG00000076127 ENSMUST00000102173 Mir718 miRNA Interval_35475 chr12 22949027 22949690 + 0 NA Intergenic Intergenic 10948 ENSMUSG00000113670.1 ENSMUSG00000113670 ENSMUST00000222206 Gm49686 transcribed_unprocessed_pseudogene Interval_82795 chr18 77098167 77098357 + 0 NA intron (ENSMUSG00000025423.16, intron 2 of 14) protein_coding-intron (ENSMUSG00000025423.16, intron 2 of 12) 33017 ENSMUSG00000025423.16 ENSMUSG00000025423 ENSMUST00000168882 Pias2 protein_coding Interval_98941 chr2 156179406 156180791 + 0 NA promoter-TSS (ENSMUSG00000027620.16) protein_coding-promoter-TSS (ENSMUSG00000027620.16) 78 ENSMUSG00000027620.16 ENSMUSG00000027620 ENSMUST00000137340 Rbm39 protein_coding Interval_118966 chr4 134758857 134759196 + 0 NA exon (ENSMUSG00000037295.7, exon 2 of 9) protein_coding-exon (ENSMUSG00000037295.7, exon 2 of 9) -8919 ENSMUSG00000037295.7 ENSMUSG00000037295 ENSMUST00000140678 Ldlrap1 protein_coding Interval_94968 chr2 102261650 102261967 + 0 NA Intergenic Intergenic 50399 ENSMUSG00000083306.1 ENSMUSG00000083306 ENSMUST00000122411 Gm13868 processed_pseudogene Interval_114560 chr4 82485955 82486188 + 0 NA intron (ENSMUSG00000008575.17, intron 2 of 4) protein_coding-intron (ENSMUSG00000008575.17, intron 2 of 11) -21945 ENSMUSG00000087413.1 ENSMUSG00000087413 ENSMUST00000139835 Gm11266 antisense Interval_112464 chr4 41400906 41401394 + 0 NA intron (ENSMUSG00000028438.16, intron 8 of 12) protein_coding-intron (ENSMUSG00000028438.16, intron 5 of 9) 29902 ENSMUSG00000028437.14 ENSMUSG00000028437 ENSMUST00000132235 Ubap1 protein_coding Interval_160812 chr8 112661359 112661728 + 0 NA intron (ENSMUSG00000031772.17, intron 2 of 20) protein_coding-intron (ENSMUSG00000031772.17, intron 2 of 23) 79907 ENSMUSG00000089344.1 ENSMUSG00000089344 ENSMUST00000158719 Gm22664 misc_RNA Interval_93749 chr2 76569889 76570709 + 0 NA intron (ENSMUSG00000042359.18, intron 15 of 26) protein_coding-intron (ENSMUSG00000042359.18, intron 15 of 26) 21959 ENSMUSG00000042359.18 ENSMUSG00000042359 ENSMUST00000124601 Osbpl6 protein_coding Interval_58873 chr15 39513696 39513969 + 0 NA intron (ENSMUSG00000037386.16, intron 18 of 26) protein_coding-intron (ENSMUSG00000037386.16, intron 16 of 26) 76594 ENSMUSG00000037386.16 ENSMUSG00000037386 ENSMUST00000226410 Rims2 protein_coding Interval_23893 chr11 27819242 27819481 + 0 NA Intergenic Intergenic -63751 ENSMUSG00000084064.1 ENSMUSG00000084064 ENSMUST00000112483 Gm12079 processed_pseudogene Interval_14809 chr10 40114517 40114808 + 0 NA intron (ENSMUSG00000019838.11, intron 1 of 2) protein_coding-intron (ENSMUSG00000019838.11, intron 1 of 5) 5200 ENSMUSG00000077200.1 ENSMUSG00000077200 ENSMUST00000104012 Gm25613 snoRNA Interval_148496 chr7 81772880 81773724 + 0 NA Intergenic Intergenic 10252 ENSMUSG00000038646.13 ENSMUSG00000038646 ENSMUST00000118190 Ramac protein_coding Interval_63539 chr15 101879937 101880798 + 0 NA Intergenic Intergenic -8030 ENSMUSG00000105236.1 ENSMUSG00000105236 ENSMUST00000196731 Gm44356 miRNA Interval_81944 chr18 66138158 66139632 + 0 NA intron (ENSMUSG00000117764.1, intron 1 of 1) protein_coding-intron (ENSMUSG00000046318.16, intron 2 of 11) 79393 ENSMUSG00000117764.1 ENSMUSG00000117764 ENSMUST00000236179 Gm50143 sense_intronic Interval_153952 chr8 11464517 11464898 + 0 NA intron (ENSMUSG00000031504.6, intron 1 of 1) protein_coding-intron (ENSMUSG00000031504.6, intron 1 of 1) -4965 ENSMUSG00000110245.1 ENSMUSG00000110245 ENSMUST00000209418 Gm20100 TEC Interval_152365 chr7 132423346 132423588 + 0 NA intron (ENSMUSG00000108870.1, intron 2 of 2) protein_coding-intron (ENSMUSG00000030849.18, intron 2 of 6) 3437 ENSMUSG00000108870.1 ENSMUSG00000108870 ENSMUST00000207259 Gm44893 lincRNA Interval_161654 chr8 121821557 121822275 + 0 NA exon (ENSMUSG00000040263.16, exon 2 of 3) protein_coding-exon (ENSMUSG00000040263.16, exon 2 of 3) 7564 ENSMUSG00000040263.16 ENSMUSG00000040263 ENSMUST00000174255 Klhdc4 protein_coding Interval_79425 chr18 31831257 31831519 + 0 NA intron (ENSMUSG00000024400.16, intron 4 of 7) protein_coding-intron (ENSMUSG00000024400.16, intron 4 of 21) -10869 ENSMUSG00000091561.3 ENSMUSG00000091561 ENSMUST00000165131 Gm6665 processed_pseudogene Interval_51353 chr14 26955930 26957186 + 0 NA intron (ENSMUSG00000040760.11, intron 7 of 7) protein_coding-intron (ENSMUSG00000040760.11, intron 7 of 21) 13947 ENSMUSG00000040760.11 ENSMUSG00000040760 ENSMUST00000142261 Appl1 protein_coding Interval_61899 chr15 85027201 85029001 + 0 NA promoter-TSS (ENSMUSG00000022434.8) protein_coding-promoter-TSS (ENSMUSG00000022434.8) -9086 ENSMUSG00000022434.8 ENSMUSG00000022434 ENSMUST00000229691 Fam118a protein_coding Interval_72886 chr17 32923727 32925562 + 0 NA TTS (ENSMUSG00000024055.15) protein_coding-TTS (ENSMUSG00000024055.15) 850 ENSMUSG00000024055.15 ENSMUSG00000024055 ENSMUST00000234653 Cyp4f13 protein_coding Interval_138303 chr6 87048651 87048870 + 0 NA intron (ENSMUSG00000029992.14, intron 1 of 2) protein_coding-intron (ENSMUSG00000029992.14, intron 1 of 19) 5910 ENSMUSG00000029992.14 ENSMUSG00000029992 ENSMUST00000146410 Gfpt1 protein_coding Interval_139309 chr6 98383007 98383603 + 0 NA Intergenic Intergenic -40646 ENSMUSG00000090667.2 ENSMUSG00000090667 ENSMUST00000204914 Gm765 protein_coding Interval_56718 chr14 121608032 121609231 + 0 NA intron (ENSMUSG00000025558.19, intron 30 of 55) protein_coding-intron (ENSMUSG00000025558.19, intron 30 of 53) 85087 ENSMUSG00000115408.1 ENSMUSG00000115408 ENSMUST00000226518 Gm4529 processed_pseudogene Interval_91800 chr2 49713342 49713542 + 0 NA intron (ENSMUSG00000026764.15, intron 3 of 6) protein_coding-intron (ENSMUSG00000026764.15, intron 11 of 25) -19169 ENSMUSG00000026764.15 ENSMUSG00000026764 ENSMUST00000132968 Kif5c protein_coding Interval_42432 chr13 13479547 13480910 + 0 NA intron (ENSMUSG00000005397.8, intron 7 of 13) protein_coding-intron (ENSMUSG00000005397.8, intron 7 of 19) 2177 ENSMUSG00000113380.1 ENSMUSG00000113380 ENSMUST00000220813 Gm48682 antisense Interval_415 chr1 5069959 5070886 + 0 NA promoter-TSS (ENSMUSG00000002459.17) protein_coding-promoter-TSS (ENSMUSG00000002459.17) 7362 ENSMUSG00000091665.1 ENSMUSG00000091665 ENSMUST00000169520 Gm17101 processed_pseudogene Interval_124838 chr5 56188920 56189877 + 0 NA Intergenic Intergenic 32060 ENSMUSG00000105685.1 ENSMUSG00000105685 ENSMUST00000198120 Gm43315 processed_pseudogene Interval_173591 chrX 100428610 100429786 + 0 NA exon (ENSMUSG00000051582.2, exon 1 of 1) protein_coding-exon (ENSMUSG00000051582.2, exon 1 of 1) 185 ENSMUSG00000051582.2 ENSMUSG00000051582 ENSMUST00000060241 Otud6a protein_coding Interval_36512 chr12 47585203 47585865 + 0 NA Intergenic Intergenic 53277 ENSMUSG00000112232.1 ENSMUSG00000112232 ENSMUST00000218324 Gm48578 lincRNA Interval_16007 chr10 60086829 60087122 + 0 NA intron (ENSMUSG00000044475.14, intron 9 of 10) protein_coding-intron (ENSMUSG00000044475.14, intron 9 of 10) -19493 ENSMUSG00000058297.16 ENSMUSG00000058297 ENSMUST00000165024 Spock2 protein_coding Interval_125080 chr5 64323938 64324880 + 0 NA intron (ENSMUSG00000029174.18, intron 3 of 8) protein_coding-intron (ENSMUSG00000029174.18, intron 16 of 21) 4153 ENSMUSG00000083100.1 ENSMUSG00000083100 ENSMUST00000121819 Gm6044 processed_pseudogene Interval_9213 chr1 155093615 155093911 + 0 NA Intergenic Intergenic 5873 ENSMUSG00000056708.5 ENSMUSG00000056708 ENSMUST00000055322 Ier5 protein_coding Interval_118755 chr4 133552855 133553991 + 0 NA promoter-TSS (ENSMUSG00000037583.2) protein_coding-promoter-TSS (ENSMUSG00000037583.2) 47 ENSMUSG00000037583.2 ENSMUSG00000037583 ENSMUST00000042706 Nr0b2 protein_coding Interval_89031 chr2 14777355 14777579 + 0 NA intron (ENSMUSG00000057914.15, intron 1 of 3) protein_coding-intron (ENSMUSG00000057914.15, intron 2 of 13) -10443 ENSMUSG00000087086.7 ENSMUSG00000087086 ENSMUST00000147019 Gm13269 antisense Interval_917 chr1 13145787 13146766 + 0 NA TTS (ENSMUSG00000005886.14) protein_coding-TTS (ENSMUSG00000005886.14) 354 ENSMUSG00000005886.14 ENSMUSG00000005886 ENSMUST00000145280 Ncoa2 protein_coding Interval_104076 chr3 58277567 58278512 + 0 NA Intergenic Intergenic 12318 ENSMUSG00000065722.1 ENSMUSG00000065722 ENSMUST00000083788 Gm26166 snRNA Interval_3761 chr1 62908531 62909058 + 0 NA Intergenic Intergenic -76424 ENSMUSG00000100426.1 ENSMUSG00000100426 ENSMUST00000189802 Gm4208 lincRNA Interval_159165 chr8 91318770 91318977 + 0 NA intron (ENSMUSG00000055932.15, intron 1 of 6) protein_coding-intron (ENSMUSG00000055932.15, intron 1 of 8) 5259 ENSMUSG00000055932.15 ENSMUSG00000055932 ENSMUST00000140276 Fto protein_coding Interval_147559 chr7 68274073 68274477 + 0 NA intron (ENSMUSG00000074071.11, intron 1 of 8) antisense-intron (ENSMUSG00000086628.7, intron 2 of 3) 823 ENSMUSG00000086628.7 ENSMUSG00000086628 ENSMUST00000124813 Gm16157 antisense Interval_141156 chr6 125312913 125314487 + 0 NA promoter-TSS (ENSMUSG00000030339.7) protein_coding-promoter-TSS (ENSMUSG00000030339.7) -4135 ENSMUSG00000030339.7 ENSMUSG00000030339 ENSMUST00000160901 Ltbr protein_coding Interval_109571 chr3 144554775 144555634 + 0 NA intron (ENSMUSG00000040151.9, intron 1 of 6) protein_coding-intron (ENSMUSG00000040151.9, intron 1 of 6) 14954 ENSMUSG00000040151.9 ENSMUSG00000040151 ENSMUST00000199680 Hs2st1 protein_coding Interval_1060 chr1 14686141 14686339 + 0 NA Intergenic Intergenic -66697 ENSMUSG00000054493.2 ENSMUSG00000054493 ENSMUST00000067599 Gm9947 antisense Interval_157577 chr8 71511316 71512148 + 0 NA promoter-TSS (ENSMUSG00000034845.6) protein_coding-promoter-TSS (ENSMUSG00000034845.6) 20 ENSMUSG00000034845.6 ENSMUSG00000034845 ENSMUST00000048452 Plvap protein_coding Interval_101193 chr2 179263607 179264810 + 0 NA Intergenic Intergenic 23718 ENSMUSG00000081481.1 ENSMUSG00000081481 ENSMUST00000118528 Gm14293 processed_pseudogene Interval_5255 chr1 86995730 86996139 + 0 NA intron (ENSMUSG00000053333.15, intron 14 of 20) protein_coding-intron (ENSMUSG00000053333.15, intron 13 of 20) 7664 ENSMUSG00000102956.1 ENSMUSG00000102956 ENSMUST00000195266 Gm37017 TEC Interval_13209 chr10 13087177 13087451 + 0 NA intron (ENSMUSG00000019817.18, intron 3 of 7) protein_coding-intron (ENSMUSG00000019817.18, intron 3 of 7) 4503 ENSMUSG00000098635.1 ENSMUSG00000098635 ENSMUST00000185060 Gm27741 misc_RNA Interval_69509 chr16 93949600 93949965 + 0 NA intron (ENSMUSG00000047109.13, intron 1 of 2) protein_coding-intron (ENSMUSG00000047109.13, intron 1 of 2) -7398 ENSMUSG00000047109.13 ENSMUSG00000047109 ENSMUST00000232406 Cldn14 protein_coding Interval_7543 chr1 132116520 132117097 + 0 NA promoter-TSS (ENSMUSG00000026437.11) protein_coding-promoter-TSS (ENSMUSG00000026437.11) -553 ENSMUSG00000026437.11 ENSMUSG00000026437 ENSMUST00000189733 Cdk18 protein_coding Interval_78499 chr18 13719676 13720770 + 0 NA intron (ENSMUSG00000024420.9, intron 2 of 5) protein_coding-intron (ENSMUSG00000024420.9, intron 5 of 7) -118823 ENSMUSG00000117608.1 ENSMUSG00000117608 ENSMUST00000234112 AC103362.1 lincRNA Interval_108356 chr3 125075980 125076168 + 0 NA Intergenic Intergenic -32801 ENSMUSG00000098033.2 ENSMUSG00000098033 ENSMUST00000182285 Gm9381 processed_pseudogene Interval_121484 chr4 156100664 156100895 + 0 NA Intergenic Intergenic -9219 ENSMUSG00000059939.13 ENSMUSG00000059939 ENSMUST00000141882 9430015G10Rik protein_coding Interval_80867 chr18 49711720 49712220 + 0 NA intron (ENSMUSG00000024505.16, intron 2 of 3) protein_coding-intron (ENSMUSG00000024505.16, intron 2 of 3) 43597 ENSMUSG00000024505.16 ENSMUSG00000024505 ENSMUST00000237137 Dtwd2 protein_coding Interval_1924 chr1 34578636 34580181 + 0 NA promoter-TSS (ENSMUSG00000045174.10) protein_coding-promoter-TSS (ENSMUSG00000045174.10) -249 ENSMUSG00000045174.10 ENSMUSG00000045174 ENSMUST00000052670 Amer3 protein_coding Interval_80785 chr18 47050569 47052077 + 0 NA intron (ENSMUSG00000042705.9, intron 5 of 6) protein_coding-intron (ENSMUSG00000042705.9, intron 5 of 6) -60816 ENSMUSG00000117621.1 ENSMUSG00000117621 ENSMUST00000234633 Hspe1-rs1 protein_coding Interval_92510 chr2 60223234 60223552 + 0 NA intron (ENSMUSG00000026977.17, intron 1 of 8) protein_coding-intron (ENSMUSG00000026977.17, intron 1 of 10) 13480 ENSMUSG00000026977.17 ENSMUSG00000026977 ENSMUST00000136367 Marchf7 protein_coding Interval_31369 chr11 100292737 100293416 + 0 NA intron (ENSMUSG00000087265.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000087265.1, intron 1 of 1) 1405 ENSMUSG00000087265.1 ENSMUSG00000087265 ENSMUST00000153030 Gm12349 lincRNA Interval_102247 chr3 19984926 19985489 + 0 NA promoter-TSS (ENSMUSG00000003617.16) protein_coding-promoter-TSS (ENSMUSG00000003617.16) 14322 ENSMUSG00000003617.16 ENSMUSG00000003617 ENSMUST00000173779 Cp protein_coding Interval_3047 chr1 52647505 52648773 + 0 NA intron (ENSMUSG00000043015.15, intron 1 of 2) protein_coding-intron (ENSMUSG00000043015.15, intron 7 of 8) 2958 ENSMUSG00000043015.15 ENSMUSG00000043015 ENSMUST00000191076 Nemp2 protein_coding Interval_48066 chr13 95719469 95720220 + 0 NA intron (ENSMUSG00000021676.10, intron 11 of 35) protein_coding-intron (ENSMUSG00000021676.10, intron 11 of 35) 12350 ENSMUSG00000118445.1 ENSMUSG00000118445 ENSMUST00000238396 Gm50469 antisense Interval_41097 chr12 111149817 111150742 + 0 NA Intergenic Intergenic 34212 ENSMUSG00000083193.1 ENSMUSG00000083193 ENSMUST00000121608 4930595D18Rik protein_coding Interval_158081 chr8 78599794 78600988 + 0 NA intron (ENSMUSG00000031684.11, intron 1 of 2) protein_coding-intron (ENSMUSG00000031684.11, intron 5 of 11) -3903 ENSMUSG00000110244.1 ENSMUSG00000110244 ENSMUST00000211775 Gm2253 processed_pseudogene Interval_40065 chr12 100963743 100964131 + 0 NA intron (ENSMUSG00000021182.16, intron 10 of 29) protein_coding-intron (ENSMUSG00000021182.16, intron 10 of 29) 22080 ENSMUSG00000097160.2 ENSMUSG00000097160 ENSMUST00000221309 A630072L19Rik antisense Interval_143828 chr7 16575939 16576980 + 0 NA intron (ENSMUSG00000058230.12, intron 2 of 7) protein_coding-intron (ENSMUSG00000058230.12, intron 1 of 6) -37365 ENSMUSG00000100583.6 ENSMUSG00000100583 ENSMUST00000186708 Gm29443 antisense Interval_160622 chr8 111112240 111112455 + 0 NA intron (ENSMUSG00000033624.10, intron 3 of 18) protein_coding-intron (ENSMUSG00000033624.10, intron 3 of 17) 17692 ENSMUSG00000033624.10 ENSMUSG00000033624 ENSMUST00000144377 Pdpr protein_coding Interval_91873 chr2 50885785 50886279 + 0 NA Intergenic Intergenic -23652 ENSMUSG00000083270.1 ENSMUSG00000083270 ENSMUST00000119159 Gm13498 processed_pseudogene Interval_23245 chr11 20864517 20865564 + 0 NA Intergenic Intergenic -17159 ENSMUSG00000064671.1 ENSMUSG00000064671 ENSMUST00000082737 Gm22807 snoRNA Interval_106043 chr3 91346561 91346941 + 0 NA Intergenic Intergenic -255948 ENSMUSG00000091175.2 ENSMUSG00000091175 ENSMUST00000166173 S100a7l2 protein_coding Interval_127908 chr5 108835838 108836596 + 0 NA exon (ENSMUSG00000091624.2, exon 6 of 6) protein_coding-exon (ENSMUSG00000091624.2, exon 6 of 6) -13564 ENSMUSG00000093479.1 ENSMUSG00000093479 ENSMUST00000176157 Gm20629 antisense Interval_114157 chr4 65295935 65296539 + 0 NA intron (ENSMUSG00000028370.7, intron 12 of 21) protein_coding-intron (ENSMUSG00000028370.7, intron 12 of 21) 172063 ENSMUSG00000028370.7 ENSMUSG00000028370 ENSMUST00000084501 Pappa protein_coding Interval_94092 chr2 83791779 83792009 + 0 NA exon (ENSMUSG00000027087.11, exon 20 of 30) protein_coding-exon (ENSMUSG00000027087.11, exon 20 of 30) -32029 ENSMUSG00000085335.1 ENSMUSG00000085335 ENSMUST00000152569 Gm13684 processed_transcript Interval_156014 chr8 42231581 42231830 + 0 NA Intergenic Intergenic -15206 ENSMUSG00000053038.8 ENSMUSG00000053038 ENSMUST00000065243 Gm6180 processed_pseudogene Interval_69877 chr16 97816483 97816826 + 0 NA intron (ENSMUSG00000014039.18, intron 8 of 22) protein_coding-intron (ENSMUSG00000014039.18, intron 9 of 23) 15526 ENSMUSG00000116863.1 ENSMUSG00000116863 ENSMUST00000231602 Gm49592 processed_pseudogene Interval_145230 chr7 30793603 30793790 + 0 NA Intergenic Intergenic 5791 ENSMUSG00000074199.7 ENSMUSG00000074199 ENSMUST00000188036 Krtdap protein_coding Interval_169260 chr9 95932399 95933338 + 0 NA intron (ENSMUSG00000032409.15, intron 36 of 46) protein_coding-intron (ENSMUSG00000032409.15, intron 36 of 46) -1745 ENSMUSG00000089085.1 ENSMUSG00000089085 ENSMUST00000158460 Gm24004 snRNA Interval_121035 chr4 152340748 152341565 + 0 NA promoter-TSS (ENSMUSG00000005045.16) protein_coding-promoter-TSS (ENSMUSG00000005045.16) 2505 ENSMUSG00000005045.16 ENSMUSG00000005045 ENSMUST00000124423 Chd5 protein_coding Interval_158875 chr8 87640886 87641371 + 0 NA Intergenic Intergenic 4471 ENSMUSG00000089301.1 ENSMUSG00000089301 ENSMUST00000158676 Gm24841 misc_RNA Interval_5377 chr1 88144110 88144588 + 0 NA intron (ENSMUSG00000054545.17, intron 2 of 4) protein_coding-intron (ENSMUSG00000054545.17, intron 1 of 4) -2027 ENSMUSG00000081602.1 ENSMUSG00000081602 ENSMUST00000119681 Gm15369 unprocessed_pseudogene Interval_114882 chr4 86685542 86687119 + 0 NA Intergenic Intergenic -27647 ENSMUSG00000028494.12 ENSMUSG00000028494 ENSMUST00000134094 Plin2 protein_coding Interval_3773 chr1 62995220 62995514 + 0 NA intron (ENSMUSG00000040865.15, intron 9 of 12) protein_coding-intron (ENSMUSG00000040865.15, intron 9 of 12) -30375 ENSMUSG00000104991.1 ENSMUSG00000104991 ENSMUST00000199516 Gm44468 miRNA Interval_142696 chr6 145040832 145041714 + 0 NA promoter-TSS (ENSMUSG00000030268.17) protein_coding-promoter-TSS (ENSMUSG00000030268.17) -3085 ENSMUSG00000088867.1 ENSMUSG00000088867 ENSMUST00000158242 Gm23071 rRNA Interval_13971 chr10 25190827 25192561 + 0 NA intron (ENSMUSG00000039166.16, intron 2 of 2) protein_coding-intron (ENSMUSG00000039166.16, intron 7 of 7) 28997 ENSMUSG00000039166.16 ENSMUSG00000039166 ENSMUST00000176231 Akap7 protein_coding Interval_23627 chr11 23953360 23955128 + 0 NA Intergenic Intergenic -25390 ENSMUSG00000084206.1 ENSMUSG00000084206 ENSMUST00000117533 Gm12062 processed_pseudogene Interval_60822 chr15 76960063 76961044 + 0 NA Intergenic Intergenic 12024 ENSMUSG00000063236.6 ENSMUSG00000063236 ENSMUST00000229229 1110038F14Rik protein_coding Interval_132370 chr5 144525409 144525910 + 0 NA Intergenic Intergenic -20243 ENSMUSG00000059991.7 ENSMUSG00000059991 ENSMUST00000071782 Nptx2 protein_coding Interval_36047 chr12 33780956 33781479 + 0 NA Intergenic Intergenic -65237 ENSMUSG00000114064.1 ENSMUSG00000114064 ENSMUST00000222787 Gm9370 processed_pseudogene Interval_51013 chr14 21609901 21610788 + 0 NA intron (ENSMUSG00000021767.19, intron 2 of 15) protein_coding-intron (ENSMUSG00000021767.19, intron 3 of 16) 92758 ENSMUSG00000063821.6 ENSMUSG00000063821 ENSMUST00000224735 Dupd1 protein_coding Interval_108804 chr3 131595663 131595829 + 0 NA intron (ENSMUSG00000028032.13, intron 8 of 14) protein_coding-intron (ENSMUSG00000028032.13, intron 5 of 11) 18034 ENSMUSG00000105973.1 ENSMUSG00000105973 ENSMUST00000198636 Gm42881 TEC Interval_42214 chr13 10033691 10034253 + 0 NA intron (ENSMUSG00000046159.16, intron 3 of 4) protein_coding-intron (ENSMUSG00000046159.16, intron 3 of 4) 17876 ENSMUSG00000113502.1 ENSMUSG00000113502 ENSMUST00000222830 Gm47411 TEC Interval_105373 chr3 85649874 85650686 + 0 NA intron (ENSMUSG00000028085.12, intron 11 of 12) protein_coding-intron (ENSMUSG00000028085.12, intron 11 of 12) 23708 ENSMUSG00000051000.17 ENSMUSG00000051000 ENSMUST00000094148 Fam160a1 protein_coding Interval_27501 chr11 68268227 68268787 + 0 NA intron (ENSMUSG00000020902.12, intron 4 of 7) protein_coding-intron (ENSMUSG00000020902.12, intron 3 of 6) 2372 ENSMUSG00000084993.1 ENSMUSG00000084993 ENSMUST00000151817 Gm12305 sense_intronic Interval_138725 chr6 91454338 91454890 + 0 NA Intergenic Intergenic -7748 ENSMUSG00000108810.1 ENSMUSG00000108810 ENSMUST00000206951 Gm44629 processed_pseudogene Interval_53056 chr14 54064534 54065730 + 0 NA Intergenic Intergenic -9773 ENSMUSG00000076867.2 ENSMUSG00000076867 ENSMUST00000103679 Trdv4 TR_V_gene Interval_77541 chr17 91143082 91143639 + 0 NA Intergenic Intergenic 18253 ENSMUSG00000117649.1 ENSMUSG00000117649 ENSMUST00000234612 Gm9411 processed_pseudogene Interval_147005 chr7 57958588 57959731 + 0 NA Intergenic Intergenic -46046 ENSMUSG00000077784.1 ENSMUSG00000077784 ENSMUST00000104596 Gm23911 snoRNA Interval_127920 chr5 109078997 109079535 + 0 NA Intergenic Intergenic 18684 ENSMUSG00000090688.2 ENSMUSG00000090688 ENSMUST00000095922 Vmn2r12 protein_coding Interval_87496 chr19 53051320 53052941 + 0 NA intron (ENSMUSG00000099988.7, intron 1 of 2) processed_transcript-intron (ENSMUSG00000099988.7, intron 1 of 2) -24113 ENSMUSG00000099988.7 ENSMUSG00000099988 ENSMUST00000236249 1700054A03Rik processed_transcript Interval_23725 chr11 25395993 25396193 + 0 NA Intergenic Intergenic 94830 ENSMUSG00000086439.1 ENSMUSG00000086439 ENSMUST00000145127 Gm12069 lincRNA Interval_113781 chr4 58552808 58554712 + 0 NA promoter-TSS (ENSMUSG00000038668.14) protein_coding-promoter-TSS (ENSMUSG00000038668.14) -5359 ENSMUSG00000038668.14 ENSMUSG00000038668 ENSMUST00000145361 Lpar1 protein_coding Interval_13625 chr10 20255029 20255779 + 0 NA intron (ENSMUSG00000019996.17, intron 6 of 6) protein_coding-intron (ENSMUSG00000019996.17, intron 6 of 17) 31227 ENSMUSG00000111447.1 ENSMUSG00000111447 ENSMUST00000215889 Gm48249 antisense Interval_144987 chr7 29287140 29289833 + 0 NA promoter-TSS (ENSMUSG00000037166.5) protein_coding-promoter-TSS (ENSMUSG00000037166.5) -822 ENSMUSG00000037166.5 ENSMUSG00000037166 ENSMUST00000048187 Ppp1r14a protein_coding Interval_3765 chr1 62933889 62934522 + 0 NA Intergenic Intergenic -91537 ENSMUSG00000104991.1 ENSMUSG00000104991 ENSMUST00000199516 Gm44468 miRNA Interval_21160 chr10 126984299 126984901 + 0 NA intron (ENSMUSG00000078429.9, intron 1 of 7) protein_coding-intron (ENSMUSG00000078429.9, intron 1 of 7) 5571 ENSMUSG00000078429.9 ENSMUSG00000078429 ENSMUST00000105255 Ctdsp2 protein_coding Interval_49478 chr13 112315389 112316607 + 0 NA intron (ENSMUSG00000049985.15, intron 1 of 5) protein_coding-intron (ENSMUSG00000049985.15, intron 1 of 10) 24877 ENSMUSG00000088991.1 ENSMUSG00000088991 ENSMUST00000158366 Gm22768 snRNA Interval_97998 chr2 146535009 146536441 + 0 NA Intergenic Intergenic -7206 ENSMUSG00000085796.1 ENSMUSG00000085796 ENSMUST00000147212 4933406D12Rik lincRNA Interval_74386 chr17 49815933 49816179 + 0 NA intron (ENSMUSG00000023999.14, intron 13 of 22) protein_coding-intron (ENSMUSG00000023999.14, intron 13 of 22) 5769 ENSMUSG00000090012.1 ENSMUSG00000090012 ENSMUST00000159971 Gm16555 antisense Interval_52416 chr14 45824613 45824853 + 0 NA intron (ENSMUSG00000085866.1, intron 1 of 3) lincRNA-intron (ENSMUSG00000085866.1, intron 1 of 3) 33813 ENSMUSG00000084276.1 ENSMUSG00000084276 ENSMUST00000121261 Gm8317 processed_pseudogene Interval_75987 chr17 74190550 74192116 + 0 NA promoter-TSS (ENSMUSG00000117113.1) TEC-promoter-TSS (ENSMUSG00000117113.1) -834 ENSMUSG00000117113.1 ENSMUSG00000117113 ENSMUST00000233013 Gm49883 TEC Interval_67986 chr16 62755300 62755523 + 0 NA intron (ENSMUSG00000050312.12, intron 5 of 5) protein_coding-intron (ENSMUSG00000050312.12, intron 5 of 5) 31355 ENSMUSG00000050312.12 ENSMUSG00000050312 ENSMUST00000231289 Nsun3 protein_coding Interval_27586 chr11 68877354 68878252 + 0 NA Intergenic Intergenic -10750 ENSMUSG00000046490.7 ENSMUSG00000046490 ENSMUST00000065213 Rnf222 protein_coding Interval_118721 chr4 133369286 133370563 + 0 NA promoter-TSS (ENSMUSG00000028854.9) protein_coding-promoter-TSS (ENSMUSG00000028854.9) 148 ENSMUSG00000092745.1 ENSMUSG00000092745 ENSMUST00000175004 Mir5122 miRNA Interval_84904 chr19 18692486 18692992 + 0 NA intron (ENSMUSG00000024726.10, intron 5 of 7) protein_coding-intron (ENSMUSG00000024726.10, intron 5 of 7) -20454 ENSMUSG00000047044.7 ENSMUSG00000047044 ENSMUST00000055792 D030056L22Rik protein_coding Interval_67873 chr16 58460131 58460482 + 0 NA promoter-TSS (ENSMUSG00000035107.13) protein_coding-promoter-TSS (ENSMUSG00000035107.13) 107 ENSMUSG00000035107.13 ENSMUSG00000035107 ENSMUST00000135415 Dcbld2 protein_coding Interval_120999 chr4 152138416 152139231 + 0 NA exon (ENSMUSG00000028943.18, exon 4 of 16) protein_coding-exon (ENSMUSG00000028943.18, exon 4 of 16) 13399 ENSMUSG00000028943.18 ENSMUSG00000028943 ENSMUST00000148075 Espn protein_coding Interval_75613 chr17 69300379 69301280 + 0 NA Intergenic Intergenic -15165 ENSMUSG00000117323.1 ENSMUSG00000117323 ENSMUST00000232963 Gm36487 lincRNA Interval_20353 chr10 117062975 117064461 + 0 NA promoter-TSS (ENSMUSG00000034024.8) protein_coding-promoter-TSS (ENSMUSG00000034024.8) -8817 ENSMUSG00000034024.8 ENSMUSG00000034024 ENSMUST00000218059 Cct2 protein_coding Interval_88334 chr2 3948079 3948906 + 0 NA Intergenic Intergenic -19353 ENSMUSG00000086445.1 ENSMUSG00000086445 ENSMUST00000136489 Gm13191 lincRNA Interval_8399 chr1 138841332 138842064 + 0 NA intron (ENSMUSG00000019230.14, intron 4 of 7) protein_coding-intron (ENSMUSG00000019230.14, intron 1 of 4) 756 ENSMUSG00000019230.14 ENSMUSG00000019230 ENSMUST00000194557 Lhx9 protein_coding Interval_29091 chr11 80260456 80261015 + 0 NA intron (ENSMUSG00000017686.17, intron 5 of 5) protein_coding-intron (ENSMUSG00000017686.17, intron 19 of 19) 6034 ENSMUSG00000017686.17 ENSMUSG00000017686 ENSMUST00000236882 Rhot1 protein_coding Interval_147927 chr7 75639734 75639997 + 0 NA intron (ENSMUSG00000066406.16, intron 2 of 3) protein_coding-intron (ENSMUSG00000066406.16, intron 8 of 36) -29008 ENSMUSG00000087896.1 ENSMUSG00000087896 ENSMUST00000157271 Gm25282 snRNA Interval_120701 chr4 150176436 150177166 + 0 NA Intergenic Intergenic 18973 ENSMUSG00000062064.6 ENSMUSG00000062064 ENSMUST00000133379 Slc2a7 protein_coding Interval_82811 chr18 77158904 77159750 + 0 NA Intergenic Intergenic 27036 ENSMUSG00000073532.3 ENSMUSG00000073532 ENSMUST00000097520 Gm7276 bidirectional_promoter_lncRNA Interval_172296 chrX 12587315 12588286 + 0 NA promoter-TSS (ENSMUSG00000031007.2) protein_coding-promoter-TSS (ENSMUSG00000031007.2) -1 ENSMUSG00000031007.2 ENSMUSG00000031007 ENSMUST00000033313 Atp6ap2 protein_coding Interval_134292 chr6 24619481 24619848 + 0 NA exon (ENSMUSG00000029684.14, exon 9 of 11) protein_coding-exon (ENSMUSG00000029684.14, exon 9 of 11) 8409 ENSMUSG00000029684.14 ENSMUSG00000029684 ENSMUST00000173399 Wasl protein_coding Interval_55733 chr14 99387305 99388591 + 0 NA TTS (ENSMUSG00000115590.1) processed_pseudogene-TTS (ENSMUSG00000115590.1) 509 ENSMUSG00000115590.1 ENSMUSG00000115590 ENSMUST00000226661 Gm49219 processed_pseudogene Interval_163513 chr9 21803773 21804763 + 0 NA promoter-TSS (ENSMUSG00000032198.9) protein_coding-promoter-TSS (ENSMUSG00000032198.9) 5732 ENSMUSG00000098473.1 ENSMUSG00000098473 ENSMUST00000184374 Mir7083 miRNA Interval_169497 chr9 98484097 98484396 + 0 NA Intergenic Intergenic -1869 ENSMUSG00000032454.9 ENSMUSG00000032454 ENSMUST00000188779 Rbp2 protein_coding Interval_127848 chr5 108206035 108206264 + 0 NA intron (ENSMUSG00000056531.11, intron 23 of 28) protein_coding-intron (ENSMUSG00000056531.11, intron 23 of 28) 5285 ENSMUSG00000105591.1 ENSMUSG00000105591 ENSMUST00000199594 Gm43083 processed_pseudogene Interval_161638 chr8 121729364 121731969 + 0 NA promoter-TSS (ENSMUSG00000025318.13) protein_coding-promoter-TSS (ENSMUSG00000025318.13) -22810 ENSMUSG00000025318.13 ENSMUSG00000025318 ENSMUST00000172209 Jph3 protein_coding Interval_125043 chr5 64065508 64065887 + 0 NA Intergenic Intergenic 20719 ENSMUSG00000106219.1 ENSMUSG00000106219 ENSMUST00000198687 5830416I19Rik lincRNA Interval_105189 chr3 83664621 83664949 + 0 NA Intergenic Intergenic -21936 ENSMUSG00000102137.1 ENSMUSG00000102137 ENSMUST00000194739 Rpl28-ps2 processed_pseudogene Interval_116764 chr4 117152380 117153511 + 0 NA TTS (ENSMUSG00000047675.15) protein_coding-TTS (ENSMUSG00000047675.15) 1217 ENSMUSG00000064542.1 ENSMUSG00000064542 ENSMUST00000082608 Gm22980 snoRNA Interval_26210 chr11 55120243 55121409 + 0 NA Intergenic Intergenic -2031 ENSMUSG00000044751.5 ENSMUSG00000044751 ENSMUST00000119447 Atp5pb-ps processed_pseudogene Interval_122798 chr5 25601434 25602023 + 0 NA Intergenic Intergenic -58081 ENSMUSG00000106144.1 ENSMUSG00000106144 ENSMUST00000181398 Gm43972 lincRNA Interval_31021 chr11 97756184 97756406 + 0 NA TTS (ENSMUSG00000018541.10) protein_coding-TTS (ENSMUSG00000018541.10) -3585 ENSMUSG00000018541.10 ENSMUSG00000018541 ENSMUST00000107579 Cwc25 protein_coding Interval_141915 chr6 135322654 135323641 + 0 NA intron (ENSMUSG00000108276.1, intron 3 of 3) antisense-intron (ENSMUSG00000108276.1, intron 3 of 3) -3586 ENSMUSG00000107768.1 ENSMUSG00000107768 ENSMUST00000203442 Gm44275 lincRNA Interval_59730 chr15 58938750 58939431 + 0 NA intron (ENSMUSG00000022354.4, intron 3 of 3) protein_coding-intron (ENSMUSG00000022354.4, intron 3 of 3) 5282 ENSMUSG00000022354.4 ENSMUSG00000022354 ENSMUST00000228595 Ndufb9 protein_coding Interval_121459 chr4 155958608 155959691 + 0 NA exon (ENSMUSG00000023286.16, exon 8 of 8) protein_coding-exon (ENSMUSG00000023286.16, exon 8 of 8) -5412 ENSMUSG00000023571.4 ENSMUSG00000023571 ENSMUST00000127222 C1qtnf12 protein_coding Interval_118395 chr4 131100412 131101253 + 0 NA Intergenic Intergenic -90358 ENSMUSG00000086262.7 ENSMUSG00000086262 ENSMUST00000153810 A930031H19Rik lincRNA Interval_84658 chr19 14791600 14793317 + 0 NA Intergenic Intergenic -73978 ENSMUSG00000084675.1 ENSMUSG00000084675 ENSMUST00000122726 Gm26026 snRNA Interval_118196 chr4 129480011 129480264 + 0 NA intron (ENSMUSG00000040859.14, intron 9 of 10) protein_coding-intron (ENSMUSG00000040859.14, intron 9 of 10) 10885 ENSMUSG00000000411.7 ENSMUSG00000000411 ENSMUST00000000421 Tssk3 protein_coding Interval_93768 chr2 76725952 76726277 + 0 NA exon (ENSMUSG00000051747.15, exon 167 of 191) protein_coding-exon (ENSMUSG00000051747.15, exon 167 of 191) 3338 ENSMUSG00000086354.2 ENSMUSG00000086354 ENSMUST00000156809 Gm13938 antisense Interval_25088 chr11 43775554 43776653 + 0 NA TTS (ENSMUSG00000050541.14) protein_coding-TTS (ENSMUSG00000050541.14) -28111 ENSMUSG00000041278.10 ENSMUSG00000041278 ENSMUST00000147984 Ttc1 protein_coding Interval_69314 chr16 92154821 92155255 + 0 NA intron (ENSMUSG00000116608.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000116747.1, intron 1 of 2) 791 ENSMUSG00000116608.1 ENSMUSG00000116608 ENSMUST00000232211 Gm41495 lincRNA Interval_78093 chr18 7924841 7925381 + 0 NA intron (ENSMUSG00000024283.15, intron 13 of 13) protein_coding-intron (ENSMUSG00000024283.15, intron 13 of 13) -7671 ENSMUSG00000091019.1 ENSMUSG00000091019 ENSMUST00000169235 Gm7502 processed_pseudogene Interval_55389 chr14 86410374 86410757 + 0 NA Intergenic Intergenic -1466 ENSMUSG00000115664.1 ENSMUSG00000115664 ENSMUST00000226187 Gm32913 lincRNA Interval_93905 chr2 78857785 78858085 + 0 NA Intergenic Intergenic -11305 ENSMUSG00000027011.14 ENSMUSG00000027011 ENSMUST00000153266 Ube2e3 protein_coding Interval_102983 chr3 34019395 34021018 + 0 NA promoter-TSS (ENSMUSG00000027680.15) protein_coding-promoter-TSS (ENSMUSG00000027680.15) -324 ENSMUSG00000105535.1 ENSMUSG00000105535 ENSMUST00000200602 Gm43077 lincRNA Interval_90555 chr2 31121067 31123561 + 0 NA intron (ENSMUSG00000075415.13, intron 1 of 5) protein_coding-intron (ENSMUSG00000075415.13, intron 1 of 13) -6002 ENSMUSG00000075415.13 ENSMUSG00000075415 ENSMUST00000136085 Fnbp1 protein_coding Interval_30659 chr11 95731443 95731647 + 0 NA intron (ENSMUSG00000075595.9, intron 1 of 6) protein_coding-intron (ENSMUSG00000075595.9, intron 1 of 5) -17455 ENSMUSG00000075595.9 ENSMUSG00000075595 ENSMUST00000091565 Zfp652 protein_coding Interval_9447 chr1 157232649 157233162 + 0 NA intron (ENSMUSG00000070565.11, intron 3 of 17) protein_coding-intron (ENSMUSG00000070565.11, intron 3 of 17) -1714 ENSMUSG00000070565.11 ENSMUSG00000070565 ENSMUST00000143080 Rasal2 protein_coding Interval_78439 chr18 12867974 12869888 + 0 NA intron (ENSMUSG00000044252.18, intron 3 of 7) protein_coding-intron (ENSMUSG00000044252.18, intron 15 of 27) 6502 ENSMUSG00000117494.1 ENSMUSG00000117494 ENSMUST00000234213 Gm49970 antisense Interval_168144 chr9 77493982 77494407 + 0 NA intron (ENSMUSG00000032352.16, intron 1 of 1) protein_coding-intron (ENSMUSG00000032352.16, intron 2 of 13) 50654 ENSMUSG00000032352.16 ENSMUSG00000032352 ENSMUST00000183980 Lrrc1 protein_coding Interval_62221 chr15 88916175 88916790 + 0 NA intron (ENSMUSG00000022388.14, intron 10 of 11) protein_coding-intron (ENSMUSG00000022388.14, intron 10 of 11) -24957 ENSMUSG00000093394.1 ENSMUSG00000093394 ENSMUST00000176338 Gm20621 sense_overlapping Interval_66342 chr16 33250967 33252123 + 0 NA exon (ENSMUSG00000022808.5, exon 1 of 14) protein_coding-exon (ENSMUSG00000022808.5, exon 1 of 14) 103 ENSMUSG00000022808.5 ENSMUSG00000022808 ENSMUST00000231242 Snx4 protein_coding Interval_125614 chr5 72710865 72711470 + 0 NA intron (ENSMUSG00000054892.14, intron 8 of 13) protein_coding-intron (ENSMUSG00000054892.14, intron 9 of 14) -14895 ENSMUSG00000105089.2 ENSMUSG00000105089 ENSMUST00000198684 Gm43717 processed_pseudogene Interval_79688 chr18 34541173 34542805 + 0 NA promoter-TSS (ENSMUSG00000012282.2) protein_coding-promoter-TSS (ENSMUSG00000012282.2) -324 ENSMUSG00000012282.2 ENSMUSG00000012282 ENSMUST00000012426 Wnt8a protein_coding Interval_138369 chr6 87679750 87680057 + 0 NA TTS (ENSMUSG00000071332.12) transcribed_unprocessed_pseudogene-TTS (ENSMUSG00000071332.12) -7774 ENSMUSG00000030051.10 ENSMUSG00000030051 ENSMUST00000203776 Aplf protein_coding Interval_55031 chr14 77239183 77240208 + 0 NA intron (ENSMUSG00000022012.9, intron 1 of 2) protein_coding-intron (ENSMUSG00000022012.9, intron 1 of 18) 12619 ENSMUSG00000063556.5 ENSMUSG00000063556 ENSMUST00000099431 Gm10132 processed_pseudogene Interval_25943 chr11 52886545 52886852 + 0 NA intron (ENSMUSG00000036264.9, intron 3 of 15) protein_coding-intron (ENSMUSG00000036264.9, intron 3 of 15) 122064 ENSMUSG00000036264.9 ENSMUSG00000036264 ENSMUST00000036796 Fstl4 protein_coding Interval_83626 chr19 3305566 3306246 + 0 NA Intergenic Intergenic 11675 ENSMUSG00000118213.1 ENSMUSG00000118213 ENSMUST00000237542 Gm50307 processed_pseudogene Interval_60254 chr15 70201225 70201449 + 0 NA Intergenic Intergenic -136668 ENSMUSG00000116398.1 ENSMUSG00000116398 ENSMUST00000231025 Gm5216 processed_pseudogene Interval_68605 chr16 80938773 80939800 + 0 NA Intergenic Intergenic -10363 ENSMUSG00000116566.1 ENSMUSG00000116566 ENSMUST00000232298 Fkbp1a-ps3 processed_pseudogene Interval_81866 chr18 65506820 65507800 + 0 NA Intergenic Intergenic 5904 ENSMUSG00000118389.1 ENSMUSG00000118389 ENSMUST00000237946 Gm50246 processed_pseudogene Interval_85621 chr19 29112490 29113131 + 0 NA intron (ENSMUSG00000024785.7, intron 1 of 8) protein_coding-intron (ENSMUSG00000024785.7, intron 1 of 8) 11435 ENSMUSG00000024785.7 ENSMUSG00000024785 ENSMUST00000235900 Rcl1 protein_coding Interval_174469 chrX 152918221 152918674 + 0 NA Intergenic Intergenic 5313 ENSMUSG00000064999.1 ENSMUSG00000064999 ENSMUST00000083065 Gm26035 misc_RNA Interval_132505 chr5 145610153 145610423 + 0 NA Intergenic Intergenic 13079 ENSMUSG00000105474.1 ENSMUSG00000105474 ENSMUST00000197069 Selenok-ps7 processed_pseudogene Interval_127680 chr5 106589090 106590654 + 0 NA intron (ENSMUSG00000098302.1, intron 2 of 2) processed_transcript-intron (ENSMUSG00000098302.1, intron 2 of 2) 14997 ENSMUSG00000101237.1 ENSMUSG00000101237 ENSMUST00000187692 Gm29464 lincRNA Interval_53054 chr14 54026676 54027428 + 0 NA Intergenic Intergenic 26093 ENSMUSG00000105823.1 ENSMUSG00000105823 ENSMUST00000198551 Trdv3 TR_V_pseudogene Interval_11662 chr1 184115006 184115227 + 0 NA Intergenic Intergenic -80815 ENSMUSG00000044854.7 ENSMUSG00000044854 ENSMUST00000050306 1700056E22Rik protein_coding Interval_57329 chr15 8821101 8822365 + 0 NA Intergenic Intergenic -92751 ENSMUSG00000107028.1 ENSMUSG00000107028 ENSMUST00000202103 Gm5043 processed_pseudogene Interval_131451 chr5 137313555 137315827 + 0 NA promoter-TSS (ENSMUSG00000023348.11) protein_coding-promoter-TSS (ENSMUSG00000023348.11) -484 ENSMUSG00000023348.11 ENSMUSG00000023348 ENSMUST00000199564 Trip6 protein_coding Interval_29112 chr11 80401036 80401502 + 0 NA intron (ENSMUSG00000017421.18, intron 10 of 10) protein_coding-intron (ENSMUSG00000017421.18, intron 10 of 10) 17990 ENSMUSG00000017421.18 ENSMUSG00000017421 ENSMUST00000123726 Zfp207 protein_coding Interval_73774 chr17 43506177 43506497 + 0 NA Intergenic Intergenic -3604 ENSMUSG00000023914.16 ENSMUSG00000023914 ENSMUST00000152155 Mep1a protein_coding Interval_41824 chr12 119955148 119955368 + 0 NA intron (ENSMUSG00000048004.15, intron 1 of 4) protein_coding-intron (ENSMUSG00000048004.15, intron 1 of 3) 9436 ENSMUSG00000048004.15 ENSMUSG00000048004 ENSMUST00000184069 Tmem196 protein_coding Interval_48819 chr13 103667597 103668472 + 0 NA intron (ENSMUSG00000114206.1, intron 1 of 3) lincRNA-intron (ENSMUSG00000114206.1, intron 1 of 3) 26108 ENSMUSG00000096642.1 ENSMUSG00000096642 ENSMUST00000179897 Gm24870 snRNA Interval_142742 chr6 145284320 145285490 + 0 NA Intergenic Intergenic 3352 ENSMUSG00000087852.1 ENSMUSG00000087852 ENSMUST00000157227 Gm22793 misc_RNA Interval_32298 chr11 106744942 106745332 + 0 NA intron (ENSMUSG00000020717.19, intron 1 of 15) protein_coding-intron (ENSMUSG00000020717.19, intron 1 of 15) -6128 ENSMUSG00000040528.15 ENSMUSG00000040528 ENSMUST00000182479 Milr1 protein_coding Interval_158466 chr8 83891848 83892284 + 0 NA Intergenic Intergenic -8669 ENSMUSG00000013033.16 ENSMUSG00000013033 ENSMUST00000131018 Adgrl1 protein_coding Interval_150750 chr7 114091404 114091651 + 0 NA intron (ENSMUSG00000055723.6, intron 1 of 5) protein_coding-intron (ENSMUSG00000055723.6, intron 1 of 5) 4629 ENSMUSG00000110248.1 ENSMUSG00000110248 ENSMUST00000210417 Gm45615 antisense Interval_114912 chr4 86889758 86890764 + 0 NA intron (ENSMUSG00000038007.14, intron 3 of 4) protein_coding-intron (ENSMUSG00000038007.14, intron 3 of 5) -32916 ENSMUSG00000028495.14 ENSMUSG00000028495 ENSMUST00000130001 Rps6 protein_coding Interval_81250 chr18 56753316 56754149 + 0 NA TTS (ENSMUSG00000024590.8) protein_coding-TTS (ENSMUSG00000024590.8) -15985 ENSMUSG00000087597.1 ENSMUSG00000087597 ENSMUST00000128240 Gm15345 antisense Interval_156320 chr8 47360663 47361272 + 0 NA intron (ENSMUSG00000038143.16, intron 7 of 7) protein_coding-intron (ENSMUSG00000038143.16, intron 7 of 7) 52870 ENSMUSG00000038143.16 ENSMUSG00000038143 ENSMUST00000181417 Stox2 protein_coding Interval_1373 chr1 21066948 21068138 + 0 NA intron (ENSMUSG00000041779.5, intron 1 of 10) protein_coding-intron (ENSMUSG00000041779.5, intron 1 of 10) -12571 ENSMUSG00000099971.1 ENSMUSG00000099971 ENSMUST00000186612 Gm28287 antisense Interval_82357 chr18 72506252 72506949 + 0 NA Intergenic Intergenic -79492 ENSMUSG00000117831.1 ENSMUSG00000117831 ENSMUST00000235371 Gm6995 processed_pseudogene Interval_167047 chr9 64862652 64862937 + 0 NA intron (ENSMUSG00000053641.9, intron 12 of 33) protein_coding-intron (ENSMUSG00000053641.9, intron 12 of 33) 19131 ENSMUSG00000089336.1 ENSMUSG00000089336 ENSMUST00000158711 Gm24347 snoRNA Interval_3313 chr1 56723569 56724013 + 0 NA Intergenic Intergenic -86356 ENSMUSG00000045336.5 ENSMUSG00000045336 ENSMUST00000062085 Hsfy2 protein_coding Interval_37283 chr12 64785995 64786327 + 0 NA promoter-TSS (ENSMUSG00000091905.3) processed_pseudogene-promoter-TSS (ENSMUSG00000091905.3) -150 ENSMUSG00000091905.3 ENSMUSG00000091905 ENSMUST00000167639 Dnajb6-ps processed_pseudogene Interval_138412 chr6 87980111 87982354 + 0 NA promoter-TSS (ENSMUSG00000084950.7) antisense-promoter-TSS (ENSMUSG00000084950.7) 405 ENSMUSG00000044927.6 ENSMUSG00000044927 ENSMUST00000056403 H1f10 protein_coding Interval_135450 chr6 39405261 39405472 + 0 NA promoter-TSS (ENSMUSG00000029922.15) protein_coding-promoter-TSS (ENSMUSG00000029922.15) -636 ENSMUSG00000029922.15 ENSMUSG00000029922 ENSMUST00000114822 Mkrn1 protein_coding Interval_90999 chr2 34084241 34084848 + 0 NA intron (ENSMUSG00000087461.2, intron 1 of 3) lincRNA-intron (ENSMUSG00000087461.2, intron 1 of 3) 23191 ENSMUSG00000087461.2 ENSMUSG00000087461 ENSMUST00000149707 C230014O12Rik lincRNA Interval_69528 chr16 94056719 94057430 + 0 NA Intergenic Intergenic 26792 ENSMUSG00000116569.1 ENSMUSG00000116569 ENSMUST00000231710 Gm49620 bidirectional_promoter_lncRNA Interval_50000 chr13 119471524 119473061 + 0 NA intron (ENSMUSG00000062822.8, intron 5 of 12) protein_coding-intron (ENSMUSG00000062822.8, intron 5 of 12) 4469 ENSMUSG00000025450.4 ENSMUSG00000025450 ENSMUST00000048965 Gm9752 processed_transcript Interval_155077 chr8 26224179 26224835 + 0 NA Intergenic Intergenic 5046 ENSMUSG00000105292.1 ENSMUSG00000105292 ENSMUST00000104842 Gm44299 miRNA Interval_151558 chr7 123577567 123577764 + 0 NA Intergenic Intergenic -96736 ENSMUSG00000030757.13 ENSMUSG00000030757 ENSMUST00000128217 Zkscan2 protein_coding Interval_109261 chr3 138456777 138457260 + 0 NA Intergenic Intergenic 13837 ENSMUSG00000028138.8 ENSMUSG00000028138 ENSMUST00000159392 Adh5 protein_coding Interval_128557 chr5 114007271 114007457 + 0 NA intron (ENSMUSG00000042096.15, intron 1 of 10) protein_coding-intron (ENSMUSG00000042096.15, intron 1 of 9) -2527 ENSMUSG00000042096.15 ENSMUSG00000042096 ENSMUST00000162214 Dao protein_coding Interval_170652 chr9 109908318 109910425 + 0 NA Intergenic Intergenic 15379 ENSMUSG00000105191.1 ENSMUSG00000105191 ENSMUST00000197587 Gm4644 processed_pseudogene Interval_23104 chr11 19965137 19965500 + 0 NA intron (ENSMUSG00000045671.17, intron 1 of 5) protein_coding-intron (ENSMUSG00000045671.17, intron 1 of 5) 10748 ENSMUSG00000045671.17 ENSMUSG00000045671 ENSMUST00000123036 Spred2 protein_coding Interval_43430 chr13 30748732 30750767 + 0 NA intron (ENSMUSG00000021356.10, intron 1 of 1) protein_coding-intron (ENSMUSG00000021356.10, intron 1 of 8) 442 ENSMUSG00000021356.10 ENSMUSG00000021356 ENSMUST00000222125 Irf4 protein_coding Interval_141711 chr6 133953446 133954525 + 0 NA Intergenic Intergenic -21576 ENSMUSG00000107771.1 ENSMUSG00000107771 ENSMUST00000203939 Gm8956 processed_pseudogene Interval_3020 chr1 52253548 52253865 + 0 NA Intergenic Intergenic 35389 ENSMUSG00000099648.1 ENSMUSG00000099648 ENSMUST00000185256 Gm5975 processed_pseudogene Interval_50764 chr14 19311259 19312595 + 0 NA Intergenic Intergenic -19398 ENSMUSG00000114877.1 ENSMUSG00000114877 ENSMUST00000224681 Gm33022 unprocessed_pseudogene Interval_20717 chr10 120484824 120486734 + 0 NA Intergenic Intergenic -9310 ENSMUSG00000056758.14 ENSMUSG00000056758 ENSMUST00000159310 Hmga2 protein_coding Interval_38229 chr12 76498704 76500085 + 0 NA Intergenic Intergenic 7039 ENSMUSG00000112167.1 ENSMUSG00000112167 ENSMUST00000218608 Gm47053 processed_pseudogene Interval_109595 chr3 144932975 144933737 + 0 NA promoter-TSS (ENSMUSG00000074195.3) protein_coding-promoter-TSS (ENSMUSG00000074195.3) -827 ENSMUSG00000074195.3 ENSMUSG00000074195 ENSMUST00000098549 Clca4b protein_coding Interval_39315 chr12 86659374 86659979 + 0 NA Intergenic Intergenic 4551 ENSMUSG00000075832.1 ENSMUSG00000075832 ENSMUST00000101884 Gm22004 snRNA Interval_125730 chr5 73642260 73642552 + 0 NA intron (ENSMUSG00000029156.11, intron 2 of 5) protein_coding-intron (ENSMUSG00000029156.11, intron 2 of 5) 2062 ENSMUSG00000029156.11 ENSMUSG00000029156 ENSMUST00000201416 Sgcb protein_coding Interval_41835 chr13 3138572 3139432 + 0 NA exon (ENSMUSG00000113651.1, exon 1 of 1) processed_pseudogene-exon (ENSMUSG00000113651.1, exon 1 of 1) 1110 ENSMUSG00000113651.1 ENSMUSG00000113651 ENSMUST00000222046 Gm4900 processed_pseudogene Interval_12053 chr1 189150160 189150552 + 0 NA Intergenic Intergenic 60657 ENSMUSG00000103669.1 ENSMUSG00000103669 ENSMUST00000194444 2900042K21Rik sense_overlapping Interval_42126 chr13 9013510 9014664 + 0 NA intron (ENSMUSG00000113543.1, intron 2 of 4) lincRNA-intron (ENSMUSG00000113543.1, intron 2 of 2) 21082 ENSMUSG00000113731.1 ENSMUSG00000113731 ENSMUST00000223218 Gm48650 processed_pseudogene Interval_169370 chr9 96747113 96747339 + 0 NA TTS (ENSMUSG00000040433.16) protein_coding-TTS (ENSMUSG00000040433.16) 5605 ENSMUSG00000040433.16 ENSMUSG00000040433 ENSMUST00000143403 Zbtb38 protein_coding Interval_163170 chr9 16599301 16599620 + 0 NA Intergenic Intergenic -98175 ENSMUSG00000074505.6 ENSMUSG00000074505 ENSMUST00000213517 Fat3 protein_coding Interval_146297 chr7 45189351 45190182 + 0 NA intron (ENSMUSG00000038292.14, intron 1 of 4) protein_coding-intron (ENSMUSG00000038292.14, intron 10 of 19) 300 ENSMUSG00000038292.14 ENSMUSG00000038292 ENSMUST00000211277 Ccdc155 protein_coding Interval_110989 chr4 11050433 11050845 + 0 NA TTS (ENSMUSG00000050323.14) protein_coding-TTS (ENSMUSG00000050323.14) 25544 ENSMUSG00000050323.14 ENSMUSG00000050323 ENSMUST00000141019 Ndufaf6 protein_coding Interval_47772 chr13 92536043 92536467 + 0 NA Intergenic Intergenic -19181 ENSMUSG00000021706.14 ENSMUSG00000021706 ENSMUST00000154850 Zfyve16 protein_coding Interval_41532 chr12 116047349 116048256 + 0 NA promoter-TSS (ENSMUSG00000042063.11) protein_coding-promoter-TSS (ENSMUSG00000042063.11) 26 ENSMUSG00000042063.11 ENSMUSG00000042063 ENSMUST00000182883 Zfp386 protein_coding Interval_82920 chr18 79108719 79110643 + 0 NA promoter-TSS (ENSMUSG00000024548.11) protein_coding-promoter-TSS (ENSMUSG00000024548.11) -290 ENSMUSG00000024548.11 ENSMUSG00000024548 ENSMUST00000025430 Setbp1 protein_coding Interval_82296 chr18 70357618 70357866 + 0 NA Intergenic Intergenic 76114 ENSMUSG00000110495.1 ENSMUSG00000110495 ENSMUST00000212521 Gm45879 unitary_pseudogene Interval_51783 chr14 32181201 32181746 + 0 NA intron (ENSMUSG00000013701.13, intron 6 of 6) protein_coding-intron (ENSMUSG00000013701.13, intron 6 of 6) 4741 ENSMUSG00000056234.15 ENSMUSG00000056234 ENSMUST00000228779 Ncoa4 protein_coding Interval_60872 chr15 77275022 77275256 + 0 NA intron (ENSMUSG00000033565.18, intron 1 of 13) protein_coding-intron (ENSMUSG00000033565.18, intron 1 of 12) -32588 ENSMUSG00000089242.1 ENSMUSG00000089242 ENSMUST00000158617 Gm24056 snRNA Interval_73402 chr17 37002073 37003549 + 0 NA promoter-TSS (ENSMUSG00000036036.15) protein_coding-promoter-TSS (ENSMUSG00000036036.15) 257 ENSMUSG00000036036.15 ENSMUSG00000036036 ENSMUST00000172502 Zfp57 protein_coding Interval_104848 chr3 75883705 75883916 + 0 NA intron (ENSMUSG00000034109.15, intron 14 of 15) protein_coding-intron (ENSMUSG00000034109.15, intron 13 of 14) -68314 ENSMUSG00000103024.1 ENSMUSG00000103024 ENSMUST00000193507 Gm37685 TEC Interval_160156 chr8 106789452 106790074 + 0 NA intron (ENSMUSG00000041949.6, intron 15 of 17) protein_coding-intron (ENSMUSG00000041949.6, intron 15 of 17) -81073 ENSMUSG00000031910.14 ENSMUSG00000031910 ENSMUST00000175987 Has3 protein_coding Interval_110548 chr4 3818985 3819998 + 0 NA Intergenic Intergenic -10740 ENSMUSG00000055216.3 ENSMUSG00000055216 ENSMUST00000068663 9430025C20Rik pseudogene Interval_8829 chr1 151420745 151421363 + 0 NA intron (ENSMUSG00000052748.14, intron 1 of 1) protein_coding-intron (ENSMUSG00000052748.14, intron 3 of 19) -7652 ENSMUSG00000053286.11 ENSMUSG00000053286 ENSMUST00000189655 Trmt1l protein_coding Interval_102578 chr3 27947413 27947794 + 0 NA intron (ENSMUSG00000027695.16, intron 1 of 26) protein_coding-intron (ENSMUSG00000027695.16, intron 1 of 26) -51235 ENSMUSG00000043164.3 ENSMUSG00000043164 ENSMUST00000058077 Tmem212 protein_coding Interval_22826 chr11 16395954 16396148 + 0 NA intron (ENSMUSG00000048834.16, intron 5 of 6) protein_coding-intron (ENSMUSG00000048834.16, intron 5 of 6) -43203 ENSMUSG00000083925.1 ENSMUSG00000083925 ENSMUST00000118857 Gm12012 processed_pseudogene Interval_58328 chr15 32411313 32412379 + 0 NA intron (ENSMUSG00000022231.10, intron 2 of 7) protein_coding-intron (ENSMUSG00000022231.10, intron 2 of 22) 167021 ENSMUSG00000022231.10 ENSMUSG00000022231 ENSMUST00000227429 Sema5a protein_coding Interval_42466 chr13 13828416 13828608 + 0 NA TTS (ENSMUSG00000021303.14) protein_coding-TTS (ENSMUSG00000021303.14) 9233 ENSMUSG00000021303.14 ENSMUSG00000021303 ENSMUST00000220727 Gng4 protein_coding Interval_138905 chr6 93350275 93350795 + 0 NA Intergenic Intergenic -14947 ENSMUSG00000077180.1 ENSMUSG00000077180 ENSMUST00000103992 Gm25094 snoRNA Interval_81608 chr18 62061962 62062201 + 0 NA Intergenic Intergenic -80537 ENSMUSG00000118370.1 ENSMUSG00000118370 ENSMUST00000236502 Gm41750 lincRNA Interval_109831 chr3 148701658 148702547 + 0 NA Intergenic Intergenic 49042 ENSMUSG00000105934.1 ENSMUSG00000105934 ENSMUST00000196420 Gm43575 processed_pseudogene Interval_62606 chr15 95481831 95482066 + 0 NA intron (ENSMUSG00000022454.17, intron 2 of 20) protein_coding-intron (ENSMUSG00000022454.17, intron 3 of 20) 46230 ENSMUSG00000022454.17 ENSMUSG00000022454 ENSMUST00000075275 Nell2 protein_coding Interval_134508 chr6 29229879 29230823 + 0 NA Intergenic Intergenic -4083 ENSMUSG00000089289.1 ENSMUSG00000089289 ENSMUST00000158664 Gm26021 snoRNA Interval_116399 chr4 111486000 111486234 + 0 NA intron (ENSMUSG00000061298.14, intron 2 of 6) protein_coding-intron (ENSMUSG00000061298.14, intron 6 of 12) 52920 ENSMUSG00000028545.13 ENSMUSG00000028545 ENSMUST00000123667 Bend5 protein_coding Interval_8755 chr1 150473820 150474644 + 0 NA Intergenic Intergenic -8634 ENSMUSG00000006014.16 ENSMUSG00000006014 ENSMUST00000159035 Prg4 protein_coding Interval_96666 chr2 127004156 127004685 + 0 NA Intergenic Intergenic -4334 ENSMUSG00000001998.15 ENSMUSG00000001998 ENSMUST00000142740 Ap4e1 protein_coding Interval_11715 chr1 184836215 184837116 + 0 NA intron (ENSMUSG00000073481.9, intron 1 of 2) protein_coding-intron (ENSMUSG00000073481.9, intron 2 of 7) -9408 ENSMUSG00000073481.9 ENSMUSG00000073481 ENSMUST00000160982 Mtarc2 protein_coding Interval_27542 chr11 68555953 68556468 + 0 NA promoter-TSS (ENSMUSG00000048329.7) protein_coding-promoter-TSS (ENSMUSG00000048329.7) 24 ENSMUSG00000048329.7 ENSMUSG00000048329 ENSMUST00000053211 Mfsd6l protein_coding Interval_126806 chr5 93080256 93080939 + 0 NA Intergenic Intergenic 6736 ENSMUSG00000088240.1 ENSMUSG00000088240 ENSMUST00000157615 Gm22915 snoRNA Interval_36218 chr12 39766341 39767173 + 0 NA Intergenic Intergenic 1571 ENSMUSG00000113277.1 ENSMUSG00000113277 ENSMUST00000220920 Gm18116 processed_pseudogene Interval_158802 chr8 86757218 86757996 + 0 NA Intergenic Intergenic -11673 ENSMUSG00000036840.5 ENSMUSG00000036840 ENSMUST00000045296 Siah1a protein_coding Interval_68461 chr16 77172070 77173014 + 0 NA Intergenic Intergenic 133018 ENSMUSG00000102289.1 ENSMUSG00000102289 ENSMUST00000194532 Gm31258 TEC Interval_149918 chr7 102619578 102620951 + 0 NA Intergenic Intergenic -2046 ENSMUSG00000073972.2 ENSMUSG00000073972 ENSMUST00000098222 Olfr553 protein_coding Interval_173519 chrX 98148423 98151559 + 0 NA exon (ENSMUSG00000046532.8, exon 1 of 8) protein_coding-exon (ENSMUSG00000046532.8, exon 1 of 8) 1222 ENSMUSG00000046532.8 ENSMUSG00000046532 ENSMUST00000052837 Ar protein_coding Interval_55165 chr14 78848700 78849863 + 0 NA promoter-TSS (ENSMUSG00000058997.8) protein_coding-promoter-TSS (ENSMUSG00000058997.8) -18011 ENSMUSG00000115290.1 ENSMUSG00000115290 ENSMUST00000226127 Gm19098 processed_pseudogene Interval_52224 chr14 40844178 40844412 + 0 NA intron (ENSMUSG00000037833.14, intron 4 of 7) protein_coding-intron (ENSMUSG00000037833.14, intron 1 of 4) 48971 ENSMUSG00000037833.14 ENSMUSG00000037833 ENSMUST00000225854 Sh2d4b protein_coding Interval_92946 chr2 68894272 68894578 + 0 NA exon (ENSMUSG00000103233.1, exon 1 of 1) TEC-exon (ENSMUSG00000103233.1, exon 1 of 1) 3059 ENSMUSG00000103233.1 ENSMUSG00000103233 ENSMUST00000192720 Gm37159 TEC Interval_117349 chr4 123159983 123160257 + 0 NA Intergenic Intergenic -20190 ENSMUSG00000028651.12 ENSMUSG00000028651 ENSMUST00000137778 Ppie protein_coding Interval_18246 chr10 84245690 84246572 + 0 NA Intergenic Intergenic -24074 ENSMUSG00000111062.1 ENSMUSG00000111062 ENSMUST00000216890 Gm47253 lincRNA Interval_65359 chr16 21830880 21831151 + 0 NA intron (ENSMUSG00000033618.7, intron 1 of 13) protein_coding-intron (ENSMUSG00000033618.7, intron 2 of 14) 5073 ENSMUSG00000033618.7 ENSMUSG00000033618 ENSMUST00000042065 Map3k13 protein_coding Interval_121394 chr4 155502349 155502829 + 0 NA exon (ENSMUSG00000082429.1, exon 1 of 1) processed_pseudogene-exon (ENSMUSG00000082429.1, exon 1 of 1) 117 ENSMUSG00000082429.1 ENSMUSG00000082429 ENSMUST00000117233 Gm13171 processed_pseudogene Interval_4951 chr1 82901563 82901823 + 0 NA TTS (ENSMUSG00000026159.13) protein_coding-TTS (ENSMUSG00000026159.13) -11632 ENSMUSG00000113880.1 ENSMUSG00000113880 ENSMUST00000220768 A030005L19Rik protein_coding Interval_37473 chr12 69205189 69205423 + 0 NA promoter-TSS (ENSMUSG00000020974.6) protein_coding-promoter-TSS (ENSMUSG00000020974.6) -849 ENSMUSG00000020974.6 ENSMUSG00000020974 ENSMUST00000221806 Pole2 protein_coding Interval_61835 chr15 84512008 84512300 + 0 NA Intergenic Intergenic 45669 ENSMUSG00000055745.4 ENSMUSG00000055745 ENSMUST00000069476 Rtl6 protein_coding Interval_129676 chr5 121666376 121666651 + 0 NA promoter-TSS (ENSMUSG00000029458.14) protein_coding-promoter-TSS (ENSMUSG00000029458.14) -16415 ENSMUSG00000029458.14 ENSMUSG00000029458 ENSMUST00000196897 Brap protein_coding Interval_89154 chr2 17582098 17582294 + 0 NA intron (ENSMUSG00000053702.16, intron 3 of 6) protein_coding-intron (ENSMUSG00000053702.16, intron 3 of 6) 18682 ENSMUSG00000099161.1 ENSMUSG00000099161 ENSMUST00000184784 Mir6419 miRNA Interval_34493 chr12 4607032 4607906 + 0 NA intron (ENSMUSG00000111971.1, intron 1 of 1) protein_coding-intron (ENSMUSG00000020640.10, intron 1 of 38) -14440 ENSMUSG00000118449.1 ENSMUSG00000118449 ENSMUST00000170816 AC241534.1 bidirectional_promoter_lncRNA Interval_84526 chr19 12247570 12248134 + 0 NA promoter-TSS (ENSMUSG00000097646.1) processed_pseudogene-promoter-TSS (ENSMUSG00000097646.1) -206 ENSMUSG00000097646.1 ENSMUSG00000097646 ENSMUST00000181346 Gm26864 processed_pseudogene Interval_56687 chr14 121378336 121380002 + 0 NA promoter-TSS (ENSMUSG00000063410.8) protein_coding-promoter-TSS (ENSMUSG00000063410.8) 842 ENSMUSG00000063410.8 ENSMUSG00000063410 ENSMUST00000226158 Stk24 protein_coding Interval_3464 chr1 58579157 58579925 + 0 NA intron (ENSMUSG00000038174.14, intron 1 of 11) protein_coding-intron (ENSMUSG00000038174.14, intron 1 of 11) -6843 ENSMUSG00000026032.8 ENSMUSG00000026032 ENSMUST00000027193 Ndufb3 protein_coding Interval_164036 chr9 31072672 31072959 + 0 NA exon (ENSMUSG00000047412.16, exon 6 of 6) protein_coding-exon (ENSMUSG00000047412.16, exon 6 of 6) 9660 ENSMUSG00000097701.1 ENSMUSG00000097701 ENSMUST00000181215 Gm17508 lincRNA Interval_55212 chr14 79353165 79353515 + 0 NA intron (ENSMUSG00000022020.15, intron 11 of 15) protein_coding-intron (ENSMUSG00000022020.15, intron 12 of 19) -2519 ENSMUSG00000022020.15 ENSMUSG00000022020 ENSMUST00000165337 Naa16 protein_coding Interval_98559 chr2 153224679 153225839 + 0 NA exon (ENSMUSG00000074671.6, exon 1 of 1) protein_coding-exon (ENSMUSG00000074671.6, exon 1 of 1) 182 ENSMUSG00000074671.6 ENSMUSG00000074671 ENSMUST00000099194 Tspyl3 protein_coding Interval_47540 chr13 87259466 87259804 + 0 NA Intergenic Intergenic -25041 ENSMUSG00000114856.1 ENSMUSG00000114856 ENSMUST00000224195 Gm47642 processed_pseudogene Interval_122273 chr5 20871142 20871847 + 0 NA intron (ENSMUSG00000039987.15, intron 1 of 5) protein_coding-intron (ENSMUSG00000039987.15, intron 1 of 17) 10551 ENSMUSG00000039987.15 ENSMUSG00000039987 ENSMUST00000156044 Phtf2 protein_coding Interval_58713 chr15 37289289 37290419 + 0 NA TTS (ENSMUSG00000022286.16) protein_coding-TTS (ENSMUSG00000022286.16) 4261 ENSMUSG00000022286.16 ENSMUSG00000022286 ENSMUST00000159221 Grhl2 protein_coding Interval_49395 chr13 111676677 111678643 + 0 NA Intergenic Intergenic -8673 ENSMUSG00000032727.14 ENSMUSG00000032727 ENSMUST00000232398 Mier3 protein_coding Interval_134283 chr6 24514669 24515498 + 0 NA promoter-TSS (ENSMUSG00000046192.4) protein_coding-promoter-TSS (ENSMUSG00000046192.4) -16 ENSMUSG00000046192.4 ENSMUSG00000046192 ENSMUST00000052277 Iqub protein_coding Interval_135265 chr6 37925341 37926748 + 0 NA intron (ENSMUSG00000029833.17, intron 5 of 7) protein_coding-intron (ENSMUSG00000029833.17, intron 5 of 18) 55233 ENSMUSG00000029833.17 ENSMUSG00000029833 ENSMUST00000135387 Trim24 protein_coding Interval_103547 chr3 48585531 48586648 + 0 NA Intergenic Intergenic 23013 ENSMUSG00000037910.2 ENSMUSG00000037910 ENSMUST00000036023 1700018B24Rik lincRNA Interval_113591 chr4 56882366 56882647 + 0 NA intron (ENSMUSG00000055296.14, intron 11 of 11) protein_coding-intron (ENSMUSG00000055296.14, intron 17 of 17) 12792 ENSMUSG00000065544.1 ENSMUSG00000065544 ENSMUST00000083610 Mir32 miRNA Interval_82457 chr18 74200781 74201121 + 0 NA intron (ENSMUSG00000036223.16, intron 3 of 5) protein_coding-intron (ENSMUSG00000036223.16, intron 4 of 6) 6796 ENSMUSG00000036223.16 ENSMUSG00000036223 ENSMUST00000237276 Ska1 protein_coding Interval_173357 chrX 84442800 84444889 + 0 NA intron (ENSMUSG00000045103.19, intron 22 of 50) protein_coding-intron (ENSMUSG00000045103.19, intron 50 of 78) 380511 ENSMUSG00000081583.1 ENSMUSG00000081583 ENSMUST00000118590 Gm14769 processed_pseudogene Interval_103716 chr3 51954585 51954967 + 0 NA intron (ENSMUSG00000061143.15, intron 1 of 4) protein_coding-intron (ENSMUSG00000061143.15, intron 1 of 4) -26165 ENSMUSG00000104161.1 ENSMUSG00000104161 ENSMUST00000192391 Gm20089 antisense Interval_164023 chr9 30996625 30997547 + 0 NA intron (ENSMUSG00000111673.1, intron 1 of 2) antisense-intron (ENSMUSG00000111673.1, intron 1 of 2) 12977 ENSMUSG00000111673.1 ENSMUSG00000111673 ENSMUST00000216803 Gm29724 antisense Interval_7140 chr1 127167290 127168105 + 0 NA Intergenic Intergenic -37331 ENSMUSG00000036155.13 ENSMUSG00000036155 ENSMUST00000171405 Mgat5 protein_coding Interval_9149 chr1 154068481 154068740 + 0 NA intron (ENSMUSG00000100627.6, intron 3 of 3) lincRNA-intron (ENSMUSG00000100627.6, intron 2 of 2) 11589 ENSMUSG00000088669.1 ENSMUSG00000088669 ENSMUST00000158044 Gm25336 snoRNA Interval_166181 chr9 57296198 57297512 + 0 NA Intergenic Intergenic 32560 ENSMUSG00000111457.1 ENSMUSG00000111457 ENSMUST00000214851 Gm18996 processed_pseudogene Interval_54435 chr14 69749143 69749882 + 0 NA Intergenic Intergenic 14026 ENSMUSG00000114316.1 ENSMUSG00000114316 ENSMUST00000223676 Gm17740 processed_pseudogene Interval_94599 chr2 92530897 92531205 + 0 NA intron (ENSMUSG00000085293.2, intron 4 of 5) lincRNA-intron (ENSMUSG00000085293.2, intron 4 of 5) 9929 ENSMUSG00000085293.2 ENSMUSG00000085293 ENSMUST00000142249 Gm13817 lincRNA Interval_114714 chr4 84200544 84201497 + 0 NA Intergenic Intergenic -70731 ENSMUSG00000087378.1 ENSMUSG00000087378 ENSMUST00000150794 Gm12414 lincRNA Interval_18897 chr10 92878052 92878382 + 0 NA intron (ENSMUSG00000020014.17, intron 57 of 67) protein_coding-intron (ENSMUSG00000020014.17, intron 56 of 66) -154529 ENSMUSG00000111740.1 ENSMUSG00000111740 ENSMUST00000213901 Gm49783 TEC Interval_106862 chr3 101372430 101372736 + 0 NA Intergenic Intergenic -4500 ENSMUSG00000042035.11 ENSMUSG00000042035 ENSMUST00000195164 Igsf3 protein_coding Interval_155922 chr8 41043652 41044156 + 0 NA intron (ENSMUSG00000045636.16, intron 3 of 4) protein_coding-intron (ENSMUSG00000045636.16, intron 5 of 13) 4148 ENSMUSG00000086773.1 ENSMUSG00000086773 ENSMUST00000148357 Gm16192 antisense Interval_173929 chrX 112903477 112903772 + 0 NA Intergenic Intergenic -54995 ENSMUSG00000081082.1 ENSMUSG00000081082 ENSMUST00000119709 Gm14937 processed_pseudogene Interval_1807 chr1 33903323 33903908 + 0 NA intron (ENSMUSG00000042182.16, intron 1 of 2) protein_coding-intron (ENSMUSG00000042182.16, intron 1 of 6) -12498 ENSMUSG00000104416.1 ENSMUSG00000104416 ENSMUST00000195730 Gm37067 TEC Interval_81979 chr18 66760474 66761515 + 0 NA promoter-TSS (ENSMUSG00000117968.1) lincRNA-promoter-TSS (ENSMUSG00000117968.1) -138 ENSMUSG00000117968.1 ENSMUSG00000117968 ENSMUST00000237489 Gm50162 lincRNA Interval_106178 chr3 94369768 94370214 + 0 NA exon (ENSMUSG00000104669.1, exon 2 of 3) antisense-exon (ENSMUSG00000104669.1, exon 2 of 3) 7254 ENSMUSG00000104669.1 ENSMUSG00000104669 ENSMUST00000197971 Gm38411 antisense Interval_56428 chr14 118682785 118683081 + 0 NA intron (ENSMUSG00000032849.14, intron 1 of 29) protein_coding-intron (ENSMUSG00000032849.14, intron 1 of 30) 16559 ENSMUSG00000032849.14 ENSMUSG00000032849 ENSMUST00000227480 Abcc4 protein_coding Interval_69104 chr16 90694698 90695309 + 0 NA Intergenic Intergenic -18003 ENSMUSG00000116582.1 ENSMUSG00000116582 ENSMUST00000232154 Gm36169 lincRNA Interval_86970 chr19 45261220 45261442 + 0 NA Intergenic Intergenic -25519 ENSMUSG00000025216.9 ENSMUSG00000025216 ENSMUST00000099401 Lbx1 protein_coding Interval_13671 chr10 20878307 20878628 + 0 NA exon (ENSMUSG00000111177.1, exon 1 of 1) processed_pseudogene-exon (ENSMUSG00000111177.1, exon 1 of 1) 506 ENSMUSG00000111177.1 ENSMUSG00000111177 ENSMUST00000213102 Rps2-ps3 processed_pseudogene Interval_56739 chr14 121763075 121763528 + 0 NA intron (ENSMUSG00000025558.19, intron 1 of 52) protein_coding-intron (ENSMUSG00000025558.19, intron 1 of 52) -24440 ENSMUSG00000025558.19 ENSMUSG00000025558 ENSMUST00000238406 Dock9 protein_coding Interval_53006 chr14 53370843 53371209 + 0 NA TTS (ENSMUSG00000076824.3) TR_V_gene-TTS (ENSMUSG00000076824.3) 949 ENSMUSG00000076824.3 ENSMUSG00000076824 ENSMUST00000103635 Trav14n-3 TR_V_gene Interval_99706 chr2 164413956 164414970 + 0 NA exon (ENSMUSG00000017007.9, exon 12 of 12) protein_coding-exon (ENSMUSG00000017007.9, exon 12 of 12) -9850 ENSMUSG00000016995.17 ENSMUSG00000016995 ENSMUST00000154940 Matn4 protein_coding Interval_168244 chr9 78151828 78152611 + 0 NA intron (ENSMUSG00000009828.15, intron 6 of 13) protein_coding-intron (ENSMUSG00000009828.15, intron 6 of 13) 23414 ENSMUSG00000065037.1 ENSMUSG00000065037 ENSMUST00000083103 Rn7sk misc_RNA Interval_116785 chr4 117288693 117290086 + 0 NA promoter-TSS (ENSMUSG00000028677.19) protein_coding-promoter-TSS (ENSMUSG00000028677.19) -6755 ENSMUSG00000085749.1 ENSMUSG00000085749 ENSMUST00000139618 Gm12843 antisense Interval_4792 chr1 78724025 78725051 + 0 NA Intergenic Intergenic 34275 ENSMUSG00000032883.15 ENSMUSG00000032883 ENSMUST00000148608 Acsl3 protein_coding Interval_37351 chr12 65377640 65377875 + 0 NA Intergenic Intergenic 28213 ENSMUSG00000077590.1 ENSMUSG00000077590 ENSMUST00000104402 Gm26015 snoRNA Interval_149503 chr7 99182128 99183260 + 0 NA promoter-TSS (ENSMUSG00000030747.5) protein_coding-promoter-TSS (ENSMUSG00000030747.5) 25 ENSMUSG00000030747.5 ENSMUSG00000030747 ENSMUST00000207893 Dgat2 protein_coding Interval_83270 chr18 83271194 83272005 + 0 NA Intergenic Intergenic 54285 ENSMUSG00000118333.1 ENSMUSG00000118333 ENSMUST00000236997 4921531P14Rik lincRNA Interval_94581 chr2 92428059 92428351 + 0 NA intron (ENSMUSG00000068742.11, intron 1 of 1) protein_coding-intron (ENSMUSG00000068742.11, intron 1 of 11) 4187 ENSMUSG00000068742.11 ENSMUSG00000068742 ENSMUST00000144842 Cry2 protein_coding Interval_16561 chr10 63691784 63692883 + 0 NA intron (ENSMUSG00000060843.11, intron 5 of 17) protein_coding-intron (ENSMUSG00000060843.11, intron 4 of 16) -128722 ENSMUSG00000060843.11 ENSMUSG00000060843 ENSMUST00000135474 Ctnna3 protein_coding Interval_85782 chr19 31082125 31083773 + 0 NA exon (ENSMUSG00000053536.7, exon 1 of 1) protein_coding-exon (ENSMUSG00000053536.7, exon 1 of 1) 112 ENSMUSG00000053536.7 ENSMUSG00000053536 ENSMUST00000066039 Cstf2t protein_coding Interval_128518 chr5 113783798 113784664 + 0 NA Intergenic Intergenic 11226 ENSMUSG00000025825.12 ENSMUSG00000025825 ENSMUST00000145592 Iscu protein_coding Interval_81712 chr18 63784356 63785406 + 0 NA intron (ENSMUSG00000040560.10, intron 2 of 3) protein_coding-intron (ENSMUSG00000040560.10, intron 16 of 27) -21664 ENSMUSG00000117977.1 ENSMUSG00000117977 ENSMUST00000236836 Gm50106 antisense Interval_158891 chr8 87755010 87755449 + 0 NA intron (ENSMUSG00000045333.15, intron 3 of 5) protein_coding-intron (ENSMUSG00000045333.15, intron 4 of 6) 118572 ENSMUSG00000089301.1 ENSMUSG00000089301 ENSMUST00000158676 Gm24841 misc_RNA Interval_28385 chr11 75540244 75541695 + 0 NA intron (ENSMUSG00000038178.16, intron 1 of 3) protein_coding-intron (ENSMUSG00000038178.16, intron 2 of 13) -7898 ENSMUSG00000109715.1 ENSMUSG00000109715 ENSMUST00000209836 Gm45606 antisense Interval_146364 chr7 45531866 45532136 + 0 NA intron (ENSMUSG00000040428.19, intron 2 of 15) protein_coding-intron (ENSMUSG00000040428.19, intron 2 of 19) 2008 ENSMUSG00000040428.19 ENSMUSG00000040428 ENSMUST00000211106 Plekha4 protein_coding Interval_92721 chr2 64097840 64099246 + 0 NA promoter-TSS (ENSMUSG00000075324.13) protein_coding-promoter-TSS (ENSMUSG00000075324.13) -533 ENSMUSG00000075324.13 ENSMUSG00000075324 ENSMUST00000153538 Fign protein_coding Interval_130348 chr5 126395580 126395783 + 0 NA Intergenic Intergenic -6027 ENSMUSG00000094875.1 ENSMUSG00000094875 ENSMUST00000178061 Gm23151 snRNA Interval_18433 chr10 85922401 85923090 + 0 NA Intergenic Intergenic -4936 ENSMUSG00000085111.3 ENSMUSG00000085111 ENSMUST00000156605 Ascl4 protein_coding Interval_28366 chr11 75416387 75417022 + 0 NA promoter-TSS (ENSMUSG00000000753.15) protein_coding-promoter-TSS (ENSMUSG00000000753.15) 1292 ENSMUSG00000000753.15 ENSMUSG00000000753 ENSMUST00000155009 Serpinf1 protein_coding Interval_119852 chr4 140507102 140507870 + 0 NA Intergenic Intergenic -61322 ENSMUSG00000118416.1 ENSMUSG00000118416 ENSMUST00000238366 Gm50453 unitary_pseudogene Interval_115077 chr4 89303003 89304181 + 0 NA Intergenic Intergenic 7447 ENSMUSG00000073802.5 ENSMUSG00000073802 ENSMUST00000097981 Cdkn2b protein_coding Interval_159480 chr8 94983801 94985062 + 0 NA promoter-TSS (ENSMUSG00000031785.16) protein_coding-promoter-TSS (ENSMUSG00000031785.16) -10047 ENSMUSG00000031785.16 ENSMUSG00000031785 ENSMUST00000211911 Adgrg1 protein_coding Interval_113301 chr4 53253834 53254613 + 0 NA Intergenic Intergenic 8027 ENSMUSG00000086947.1 ENSMUSG00000086947 ENSMUST00000155178 4930522O17Rik antisense Interval_58254 chr15 31412707 31414717 + 0 NA Intergenic Intergenic 33105 ENSMUSG00000068964.5 ENSMUSG00000068964 ENSMUST00000091031 Gm6361 processed_pseudogene Interval_78451 chr18 12923113 12923398 + 0 NA intron (ENSMUSG00000044252.18, intron 4 of 7) protein_coding-intron (ENSMUSG00000044252.18, intron 4 of 27) 24828 ENSMUSG00000080866.1 ENSMUSG00000080866 ENSMUST00000118252 Gm5687 processed_pseudogene Interval_80532 chr18 43437649 43438775 + 0 NA promoter-TSS (ENSMUSG00000024501.20) protein_coding-promoter-TSS (ENSMUSG00000024501.20) -34604 ENSMUSG00000097891.1 ENSMUSG00000097891 ENSMUST00000180600 Gm3650 unprocessed_pseudogene Interval_66 GL456212.1 127809 129177 + 0 NA NA NA NA NA Interval_153369 chr7 144074591 144075138 + 0 NA intron (ENSMUSG00000037541.22, intron 6 of 17) protein_coding-intron (ENSMUSG00000037541.22, intron 7 of 22) 36221 ENSMUSG00000109500.1 ENSMUSG00000109500 ENSMUST00000207456 Gm44999 TEC Interval_136149 chr6 51514581 51515446 + 0 NA Intergenic Intergenic -29510 ENSMUSG00000038301.15 ENSMUSG00000038301 ENSMUST00000149024 Snx10 protein_coding Interval_127793 chr5 107875053 107875385 + 0 NA promoter-TSS (ENSMUSG00000011831.16) protein_coding-promoter-TSS (ENSMUSG00000011831.16) 6745 ENSMUSG00000104748.1 ENSMUSG00000104748 ENSMUST00000196922 Gm43592 TEC Interval_104784 chr3 73065869 73066959 + 0 NA promoter-TSS (ENSMUSG00000103428.1) lincRNA-promoter-TSS (ENSMUSG00000103428.1) 63 ENSMUSG00000103428.1 ENSMUSG00000103428 ENSMUST00000192642 Gm20754 lincRNA Interval_128363 chr5 112806279 112806569 + 0 NA intron (ENSMUSG00000072720.9, intron 19 of 28) protein_coding-intron (ENSMUSG00000072720.9, intron 25 of 43) 13092 ENSMUSG00000098230.7 ENSMUSG00000098230 ENSMUST00000189887 1700095B10Rik antisense Interval_97205 chr2 132234674 132236633 + 0 NA Intergenic Intergenic 12135 ENSMUSG00000027341.10 ENSMUSG00000027341 ENSMUST00000141813 Tmem230 protein_coding Interval_2490 chr1 39719021 39719522 + 0 NA intron (ENSMUSG00000057173.8, intron 1 of 14) protein_coding-intron (ENSMUSG00000057173.8, intron 1 of 14) 1726 ENSMUSG00000057173.8 ENSMUSG00000057173 ENSMUST00000126760 Rfx8 protein_coding Interval_61295 chr15 80639960 80640211 + 0 NA promoter-TSS (ENSMUSG00000116433.1) TEC-promoter-TSS (ENSMUSG00000116433.1) -373 ENSMUSG00000116433.1 ENSMUSG00000116433 ENSMUST00000230939 Gm49553 TEC Interval_131885 chr5 140590824 140591070 + 0 NA Intergenic Intergenic 15604 ENSMUSG00000105699.1 ENSMUSG00000105699 ENSMUST00000200523 Gm43703 lincRNA Interval_121552 chr5 3386162 3387441 + 0 NA intron (ENSMUSG00000040274.11, intron 1 of 1) protein_coding-intron (ENSMUSG00000040274.11, intron 1 of 6) -84148 ENSMUSG00000040274.11 ENSMUSG00000040274 ENSMUST00000199396 Cdk6 protein_coding Interval_107064 chr3 103252512 103253061 + 0 NA Intergenic Intergenic -5523 ENSMUSG00000104976.1 ENSMUSG00000104976 ENSMUST00000200621 Gm43060 processed_pseudogene Interval_84947 chr19 19604655 19605278 + 0 NA Intergenic Intergenic 271597 ENSMUSG00000118167.1 ENSMUSG00000118167 ENSMUST00000235148 Gm50216 lincRNA Interval_19502 chr10 100604465 100604687 + 0 NA intron (ENSMUSG00000056912.12, intron 7 of 13) protein_coding-intron (ENSMUSG00000056912.12, intron 6 of 12) 14092 ENSMUSG00000056912.12 ENSMUSG00000056912 ENSMUST00000191033 1700017N19Rik protein_coding Interval_27706 chr11 69570303 69570505 + 0 NA intron (ENSMUSG00000041346.11, intron 3 of 9) protein_coding-intron (ENSMUSG00000041346.11, intron 3 of 9) -6482 ENSMUSG00000041346.11 ENSMUSG00000041346 ENSMUST00000132548 Wrap53 protein_coding Interval_36738 chr12 52790411 52791355 + 0 NA intron (ENSMUSG00000061603.8, intron 1 of 13) protein_coding-intron (ENSMUSG00000061603.8, intron 1 of 13) -4953 ENSMUSG00000061603.8 ENSMUSG00000061603 ENSMUST00000219786 Akap6 protein_coding Interval_161488 chr8 120685051 120685378 + 0 NA promoter-TSS (ENSMUSG00000104484.1) TEC-promoter-TSS (ENSMUSG00000104484.1) -185 ENSMUSG00000104484.1 ENSMUSG00000104484 ENSMUST00000193913 Gm33142 TEC Interval_44044 chr13 40450954 40451562 + 0 NA Intergenic Intergenic -44930 ENSMUSG00000114248.1 ENSMUSG00000114248 ENSMUST00000226074 Gm8352 processed_pseudogene Interval_59962 chr15 62265244 62265859 + 0 NA intron (ENSMUSG00000097039.8, intron 5 of 9) lincRNA-intron (ENSMUSG00000097039.8, intron 5 of 9) -46219 ENSMUSG00000101167.1 ENSMUSG00000101167 ENSMUST00000151919 Macroh2a3 processed_pseudogene Interval_10395 chr1 170381303 170381640 + 0 NA intron (ENSMUSG00000038473.14, intron 3 of 7) protein_coding-intron (ENSMUSG00000038473.14, intron 3 of 3) -60691 ENSMUSG00000038473.14 ENSMUSG00000038473 ENSMUST00000159665 Nos1ap protein_coding Interval_113710 chr4 57793946 57795317 + 0 NA intron (ENSMUSG00000038729.24, intron 1 of 1) protein_coding-intron (ENSMUSG00000038729.24, intron 2 of 2) -26419 ENSMUSG00000038729.24 ENSMUSG00000038729 ENSMUST00000102902 Pakap protein_coding Interval_29679 chr11 85995426 85995790 + 0 NA Intergenic Intergenic 45113 ENSMUSG00000081632.1 ENSMUSG00000081632 ENSMUST00000118790 Gm11443 processed_pseudogene Interval_31400 chr11 100452431 100453545 + 0 NA intron (ENSMUSG00000001558.5, intron 3 of 4) protein_coding-intron (ENSMUSG00000001558.5, intron 3 of 4) -10513 ENSMUSG00000099193.1 ENSMUSG00000099193 ENSMUST00000183660 Gm27374 miRNA Interval_97134 chr2 131530045 131530937 + 0 NA Intergenic Intergenic -31123 ENSMUSG00000087524.1 ENSMUSG00000087524 ENSMUST00000146049 Gm14285 antisense Interval_86141 chr19 37013102 37014069 + 0 NA TTS (ENSMUSG00000040565.8) protein_coding-TTS (ENSMUSG00000040565.8) 53400 ENSMUSG00000040565.8 ENSMUSG00000040565 ENSMUST00000236343 Btaf1 protein_coding Interval_99632 chr2 163719143 163719918 + 0 NA intron (ENSMUSG00000035268.14, intron 3 of 3) protein_coding-intron (ENSMUSG00000035268.14, intron 2 of 3) 11336 ENSMUSG00000017697.3 ENSMUSG00000017697 ENSMUST00000156939 Ada protein_coding Interval_60222 chr15 68368145 68368670 + 0 NA Intergenic Intergenic -5231 ENSMUSG00000093387.1 ENSMUSG00000093387 ENSMUST00000175699 Gm20732 lincRNA Interval_145097 chr7 30001384 30001653 + 0 NA intron (ENSMUSG00000074221.12, intron 4 of 7) protein_coding-intron (ENSMUSG00000074221.12, intron 4 of 7) 16262 ENSMUSG00000074221.12 ENSMUSG00000074221 ENSMUST00000177931 Zfp568 protein_coding Interval_126237 chr5 83620986 83621340 + 0 NA Intergenic Intergenic 27791 ENSMUSG00000077288.1 ENSMUSG00000077288 ENSMUST00000104100 Gm25765 snoRNA Interval_27020 chr11 62414523 62415688 + 0 NA intron (ENSMUSG00000018501.17, intron 4 of 14) protein_coding-intron (ENSMUSG00000018501.17, intron 5 of 45) -31751 ENSMUSG00000018501.17 ENSMUSG00000018501 ENSMUST00000141447 Ncor1 protein_coding Interval_118258 chr4 129866021 129866761 + 0 NA Intergenic Intergenic 11320 ENSMUSG00000073753.4 ENSMUSG00000073753 ENSMUST00000097869 Gm10571 pseudogene Interval_132856 chr5 148351795 148352147 + 0 NA TTS (ENSMUSG00000041313.14) protein_coding-TTS (ENSMUSG00000041313.14) 47820 ENSMUSG00000041313.14 ENSMUSG00000041313 ENSMUST00000201348 Slc7a1 protein_coding Interval_159363 chr8 94068403 94070206 + 0 NA intron (ENSMUSG00000031755.6, intron 1 of 1) protein_coding-intron (ENSMUSG00000031755.6, intron 16 of 16) 10452 ENSMUSG00000031755.6 ENSMUSG00000031755 ENSMUST00000172347 Bbs2 protein_coding Interval_99262 chr2 158524594 158524965 + 0 NA intron (ENSMUSG00000074625.10, intron 1 of 14) protein_coding-intron (ENSMUSG00000074625.10, intron 1 of 14) 11983 ENSMUSG00000074625.10 ENSMUSG00000074625 ENSMUST00000135838 Arhgap40 protein_coding Interval_26881 chr11 61258998 61259533 + 0 NA intron (ENSMUSG00000010025.19, intron 4 of 5) protein_coding-intron (ENSMUSG00000010025.19, intron 4 of 9) -8255 ENSMUSG00000010025.19 ENSMUSG00000010025 ENSMUST00000149298 Aldh3a2 protein_coding Interval_47054 chr13 74861033 74861803 + 0 NA Intergenic Intergenic -2887 ENSMUSG00000086743.2 ENSMUSG00000086743 ENSMUST00000129154 Hnrnpa1l2-ps processed_pseudogene Interval_144114 chr7 19489082 19490011 + 0 NA intron (ENSMUSG00000011263.16, intron 9 of 11) protein_coding-intron (ENSMUSG00000011263.16, intron 1 of 4) 18821 ENSMUSG00000057667.7 ENSMUSG00000057667 ENSMUST00000077408 Bloc1s3 protein_coding Interval_47820 chr13 93506810 93507018 + 0 NA Intergenic Intergenic -7177 ENSMUSG00000021690.10 ENSMUSG00000021690 ENSMUST00000220513 Jmy protein_coding Interval_157213 chr8 67974136 67974682 + 0 NA exon (ENSMUSG00000030465.19, exon 1 of 15) protein_coding-exon (ENSMUSG00000030465.19, exon 1 of 15) 17640 ENSMUSG00000087266.2 ENSMUSG00000087266 ENSMUST00000127631 Gm15991 antisense Interval_2825 chr1 45905069 45905358 + 0 NA promoter-TSS (ENSMUSG00000099381.1) processed_pseudogene-promoter-TSS (ENSMUSG00000099381.1) -410 ENSMUSG00000099381.1 ENSMUSG00000099381 ENSMUST00000190055 Gm18303 processed_pseudogene Interval_43024 chr13 23284952 23287399 + 0 NA intron (ENSMUSG00000085488.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000085488.1, intron 1 of 1) 7825 ENSMUSG00000085122.1 ENSMUSG00000085122 ENSMUST00000156977 4933404K08Rik lincRNA Interval_122181 chr5 19052413 19053754 + 0 NA Intergenic Intergenic 148522 ENSMUSG00000106498.1 ENSMUSG00000106498 ENSMUST00000197967 Gm43032 TEC Interval_164231 chr9 33246608 33247162 + 0 NA intron (ENSMUSG00000111645.1, intron 2 of 4) lincRNA-intron (ENSMUSG00000111645.1, intron 2 of 4) -49359 ENSMUSG00000111467.1 ENSMUSG00000111467 ENSMUST00000215382 Gm47775 lincRNA Interval_116074 chr4 107421881 107422378 + 0 NA Intergenic Intergenic -12443 ENSMUSG00000092723.1 ENSMUSG00000092723 ENSMUST00000174982 Gm24804 miRNA Interval_121557 chr5 3424186 3424773 + 0 NA intron (ENSMUSG00000040274.11, intron 3 of 7) protein_coding-intron (ENSMUSG00000040274.11, intron 2 of 6) -46470 ENSMUSG00000040274.11 ENSMUSG00000040274 ENSMUST00000199396 Cdk6 protein_coding Interval_31626 chr11 101813129 101815467 + 0 NA Intergenic Intergenic -28988 ENSMUSG00000017724.14 ENSMUSG00000017724 ENSMUST00000154512 Etv4 protein_coding Interval_37751 chr12 71704397 71705073 + 0 NA intron (ENSMUSG00000114028.1, intron 3 of 5) lincRNA-intron (ENSMUSG00000114028.1, intron 3 of 5) -19917 ENSMUSG00000084463.1 ENSMUSG00000084463 ENSMUST00000122514 Gm22959 misc_RNA Interval_159205 chr8 91660521 91661065 + 0 NA intron (ENSMUSG00000055932.15, intron 5 of 5) protein_coding-intron (ENSMUSG00000055932.15, intron 8 of 8) 11104 ENSMUSG00000110302.1 ENSMUSG00000110302 ENSMUST00000210393 Gm45295 TEC Interval_95897 chr2 118192406 118192717 + 0 NA intron (ENSMUSG00000027344.14, intron 10 of 11) protein_coding-intron (ENSMUSG00000027344.14, intron 10 of 11) 56221 ENSMUSG00000093368.1 ENSMUSG00000093368 ENSMUST00000175627 Gm22800 miRNA Interval_105999 chr3 90527437 90527851 + 0 NA exon (ENSMUSG00000042306.11, exon 2 of 2) protein_coding-exon (ENSMUSG00000042306.11, exon 2 of 2) 772 ENSMUSG00000042306.11 ENSMUSG00000042306 ENSMUST00000200565 S100a14 protein_coding Interval_8596 chr1 143664766 143665891 + 0 NA intron (ENSMUSG00000026361.9, intron 10 of 10) protein_coding-intron (ENSMUSG00000026361.9, intron 10 of 16) -17902 ENSMUSG00000089640.1 ENSMUSG00000089640 ENSMUST00000161973 Gm6397 processed_pseudogene Interval_116321 chr4 109794032 109794415 + 0 NA intron (ENSMUSG00000010517.7, intron 7 of 18) protein_coding-intron (ENSMUSG00000010517.7, intron 7 of 18) -39406 ENSMUSG00000083995.1 ENSMUSG00000083995 ENSMUST00000120597 Gm12808 processed_pseudogene Interval_73024 chr17 34196981 34198716 + 0 NA promoter-TSS (ENSMUSG00000024338.15) protein_coding-promoter-TSS (ENSMUSG00000024338.15) -529 ENSMUSG00000024338.15 ENSMUSG00000024338 ENSMUST00000236331 Psmb8 protein_coding Interval_134258 chr6 23930202 23930844 + 0 NA Intergenic Intergenic 39537 ENSMUSG00000043865.3 ENSMUSG00000043865 ENSMUST00000062463 Tas2r118 protein_coding Interval_78302 chr18 11844153 11845808 + 0 NA intron (ENSMUSG00000040957.15, intron 1 of 8) protein_coding-intron (ENSMUSG00000040957.15, intron 1 of 8) 680 ENSMUSG00000040957.15 ENSMUSG00000040957 ENSMUST00000225430 Cables1 protein_coding Interval_41554 chr12 116247493 116248509 + 0 NA exon (ENSMUSG00000042050.8, exon 5 of 22) protein_coding-exon (ENSMUSG00000042050.8, exon 5 of 22) -5434 ENSMUSG00000096694.1 ENSMUSG00000096694 ENSMUST00000180307 Gm23190 miRNA Interval_156412 chr8 47978733 47979830 + 0 NA intron (ENSMUSG00000031563.8, intron 1 of 22) protein_coding-intron (ENSMUSG00000031563.8, intron 1 of 22) 11643 ENSMUSG00000031563.8 ENSMUSG00000031563 ENSMUST00000212282 Wwc2 protein_coding Interval_122556 chr5 23787256 23788220 + 0 NA promoter-TSS (ENSMUSG00000028999.15) protein_coding-promoter-TSS (ENSMUSG00000028999.15) 17 ENSMUSG00000028999.15 ENSMUSG00000028999 ENSMUST00000144709 Rint1 protein_coding Interval_96472 chr2 124354946 124355287 + 0 NA intron (ENSMUSG00000027200.17, intron 2 of 4) protein_coding-intron (ENSMUSG00000027200.17, intron 3 of 20) -132785 ENSMUSG00000086954.1 ENSMUSG00000086954 ENSMUST00000136658 4930583P06Rik lincRNA Interval_151407 chr7 122125560 122126175 + 0 NA exon (ENSMUSG00000044702.13, exon 4 of 4) protein_coding-exon (ENSMUSG00000044702.13, exon 4 of 4) -5225 ENSMUSG00000089631.2 ENSMUSG00000089631 ENSMUST00000162843 Gm16326 processed_pseudogene Interval_78512 chr18 13919775 13920489 + 0 NA intron (ENSMUSG00000024420.9, intron 2 of 2) protein_coding-intron (ENSMUSG00000024420.9, intron 3 of 7) -16662 ENSMUSG00000117600.1 ENSMUSG00000117600 ENSMUST00000234954 Gm50094 TEC Interval_62030 chr15 86002199 86002802 + 0 NA intron (ENSMUSG00000016028.11, intron 1 of 34) protein_coding-intron (ENSMUSG00000016028.11, intron 1 of 34) -72233 ENSMUSG00000035900.18 ENSMUSG00000035900 ENSMUST00000147286 Gramd4 protein_coding Interval_40946 chr12 110120357 110121591 + 0 NA Intergenic Intergenic -34551 ENSMUSG00000113868.1 ENSMUSG00000113868 ENSMUST00000222231 Gm34719 lincRNA Interval_142014 chr6 136550968 136551195 + 0 NA promoter-TSS (ENSMUSG00000030213.12) protein_coding-promoter-TSS (ENSMUSG00000030213.12) -32050 ENSMUSG00000107702.1 ENSMUSG00000107702 ENSMUST00000204157 Gm44140 bidirectional_promoter_lncRNA Interval_72387 chr17 29527470 29528001 + 0 NA intron (ENSMUSG00000079580.9, intron 2 of 2) protein_coding-intron (ENSMUSG00000079580.9, intron 2 of 2) 21903 ENSMUSG00000091614.2 ENSMUSG00000091614 ENSMUST00000168877 Gm17657 protein_coding Interval_79049 chr18 24172774 24173753 + 0 NA Intergenic Intergenic -51310 ENSMUSG00000047989.11 ENSMUSG00000047989 ENSMUST00000125169 Ino80c protein_coding Interval_61685 chr15 83394134 83394450 + 0 NA intron (ENSMUSG00000016664.16, intron 2 of 10) protein_coding-intron (ENSMUSG00000016664.16, intron 2 of 11) -9201 ENSMUSG00000016664.16 ENSMUSG00000016664 ENSMUST00000229337 Pacsin2 protein_coding Interval_100153 chr2 167367504 167368769 + 0 NA Intergenic Intergenic -54281 ENSMUSG00000017929.13 ENSMUSG00000017929 ENSMUST00000133557 B4galt5 protein_coding Interval_30917 chr11 97209461 97210480 + 0 NA intron (ENSMUSG00000001441.13, intron 2 of 2) protein_coding-intron (ENSMUSG00000001441.13, intron 22 of 22) -44570 ENSMUSG00000001440.5 ENSMUSG00000001440 ENSMUST00000153727 Kpnb1 protein_coding Interval_79075 chr18 24362167 24362582 + 0 NA Intergenic Intergenic 23008 ENSMUSG00000117570.1 ENSMUSG00000117570 ENSMUST00000234938 Gm38410 lincRNA Interval_63731 chr15 103113457 103113729 + 0 NA Intergenic Intergenic -8991 ENSMUSG00000101588.1 ENSMUSG00000101588 ENSMUST00000188201 Gm28265 lincRNA Interval_17768 chr10 79970695 79971564 + 0 NA TTS (ENSMUSG00000035754.8) protein_coding-TTS (ENSMUSG00000035754.8) -2608 ENSMUSG00000035745.9 ENSMUSG00000035745 ENSMUST00000131816 Grin3b protein_coding Interval_33680 chr11 117879545 117880004 + 0 NA intron (ENSMUSG00000085434.1, intron 3 of 3) antisense-intron (ENSMUSG00000085434.1, intron 3 of 3) -6293 ENSMUSG00000017713.9 ENSMUSG00000017713 ENSMUST00000138354 Tha1 protein_coding Interval_30030 chr11 88795822 88796868 + 0 NA Intergenic Intergenic 45195 ENSMUSG00000018428.15 ENSMUSG00000018428 ENSMUST00000153787 Akap1 protein_coding Interval_142670 chr6 144937157 144937722 + 0 NA Intergenic Intergenic 100749 ENSMUSG00000088867.1 ENSMUSG00000088867 ENSMUST00000158242 Gm23071 rRNA Interval_117192 chr4 120404679 120406175 + 0 NA promoter-TSS (ENSMUSG00000000085.16) protein_coding-promoter-TSS (ENSMUSG00000000085.16) 46 ENSMUSG00000000085.16 ENSMUSG00000000085 ENSMUST00000133169 Scmh1 protein_coding Interval_138308 chr6 87069406 87069630 + 0 NA intron (ENSMUSG00000029992.14, intron 11 of 18) protein_coding-intron (ENSMUSG00000029992.14, intron 12 of 19) 26668 ENSMUSG00000029992.14 ENSMUSG00000029992 ENSMUST00000146410 Gfpt1 protein_coding Interval_12524 chr1 194821510 194821722 + 0 NA promoter-TSS (ENSMUSG00000092633.1) miRNA-promoter-TSS (ENSMUSG00000092633.1) -385 ENSMUSG00000092633.1 ENSMUSG00000092633 ENSMUST00000174892 Mir3962 miRNA Interval_136288 chr6 52565439 52566096 + 0 NA intron (ENSMUSG00000029776.11, intron 3 of 5) protein_coding-intron (ENSMUSG00000029776.11, intron 4 of 7) 5215 ENSMUSG00000107647.1 ENSMUSG00000107647 ENSMUST00000204075 Gm44445 TEC Interval_57983 chr15 25850600 25851077 + 0 NA intron (ENSMUSG00000022270.16, intron 1 of 8) protein_coding-intron (ENSMUSG00000022270.16, intron 1 of 8) -10227 ENSMUSG00000115593.1 ENSMUSG00000115593 ENSMUST00000228649 Gm4824 processed_pseudogene Interval_76885 chr17 84728053 84728549 + 0 NA intron (ENSMUSG00000024120.12, intron 1 of 6) protein_coding-intron (ENSMUSG00000024120.12, intron 27 of 37) 2883 ENSMUSG00000024120.12 ENSMUSG00000024120 ENSMUST00000159222 Lrpprc protein_coding Interval_156940 chr8 62029028 62029372 + 0 NA intron (ENSMUSG00000037921.15, intron 2 of 4) protein_coding-intron (ENSMUSG00000037921.15, intron 35 of 37) 93950 ENSMUSG00000031635.14 ENSMUSG00000031635 ENSMUST00000210799 Anxa10 protein_coding Interval_97339 chr2 134838454 134838860 + 0 NA intron (ENSMUSG00000051177.16, intron 2 of 6) protein_coding-intron (ENSMUSG00000051177.16, intron 2 of 31) 34708 ENSMUSG00000082399.1 ENSMUSG00000082399 ENSMUST00000118248 Gm14036 processed_pseudogene Interval_57223 chr15 7961134 7961918 + 0 NA intron (ENSMUSG00000039828.7, intron 10 of 17) protein_coding-intron (ENSMUSG00000039828.7, intron 10 of 17) -13549 ENSMUSG00000116090.1 ENSMUSG00000116090 ENSMUST00000229131 Rpl19-ps6 processed_pseudogene Interval_67630 chr16 54432538 54432973 + 0 NA Intergenic Intergenic 78293 ENSMUSG00000064727.1 ENSMUSG00000064727 ENSMUST00000082793 Gm25853 snoRNA Interval_101469 chr2 181612478 181613486 + 0 NA intron (ENSMUSG00000002455.14, intron 2 of 11) protein_coding-intron (ENSMUSG00000002455.14, intron 2 of 20) 11609 ENSMUSG00000002455.14 ENSMUSG00000002455 ENSMUST00000139955 Prpf6 protein_coding Interval_76401 chr17 79956872 79957312 + 0 NA Intergenic Intergenic -22520 ENSMUSG00000117458.1 ENSMUSG00000117458 ENSMUST00000234229 Gm6552 processed_pseudogene Interval_129941 chr5 123192765 123192991 + 0 NA intron (ENSMUSG00000029440.15, intron 2 of 3) protein_coding-intron (ENSMUSG00000029440.15, intron 2 of 3) -1290 ENSMUSG00000104606.1 ENSMUSG00000104606 ENSMUST00000195921 Gm43409 lincRNA Interval_123628 chr5 33946934 33947485 + 0 NA TTS (ENSMUSG00000106688.1) lincRNA-TTS (ENSMUSG00000106688.1) 183 ENSMUSG00000107043.1 ENSMUSG00000107043 ENSMUST00000202834 Gm42849 lincRNA Interval_1999 chr1 35813734 35814338 + 0 NA Intergenic Intergenic 7062 ENSMUSG00000101714.1 ENSMUSG00000101714 ENSMUST00000187528 Gm28415 lincRNA Interval_14862 chr10 40598825 40599398 + 0 NA intron (ENSMUSG00000019834.15, intron 7 of 7) protein_coding-intron (ENSMUSG00000019834.15, intron 7 of 7) 28775 ENSMUSG00000019834.15 ENSMUSG00000019834 ENSMUST00000019978 Slc22a16 protein_coding Interval_161432 chr8 120437581 120438155 + 0 NA intron (ENSMUSG00000031822.20, intron 2 of 2) protein_coding-intron (ENSMUSG00000092329.1, intron 1 of 15) 5681 ENSMUSG00000080549.2 ENSMUSG00000080549 ENSMUST00000116899 Gm22715 miRNA Interval_91932 chr2 51731649 51732704 + 0 NA promoter-TSS (ENSMUSG00000085014.1) lincRNA-promoter-TSS (ENSMUSG00000085014.1) -167 ENSMUSG00000085014.1 ENSMUSG00000085014 ENSMUST00000143870 Gm13490 lincRNA Interval_132688 chr5 147165020 147165219 + 0 NA Intergenic Intergenic -23577 ENSMUSG00000053129.5 ENSMUSG00000053129 ENSMUST00000065382 Gsx1 protein_coding Interval_105132 chr3 82144730 82145952 + 0 NA promoter-TSS (ENSMUSG00000033910.13) protein_coding-promoter-TSS (ENSMUSG00000033910.13) 264 ENSMUSG00000033910.13 ENSMUSG00000033910 ENSMUST00000194788 Gucy1a1 protein_coding Interval_70168 chr17 5923274 5924380 + 0 NA intron (ENSMUSG00000002365.10, intron 13 of 17) protein_coding-intron (ENSMUSG00000002365.10, intron 13 of 17) -15260 ENSMUSG00000116734.1 ENSMUSG00000116734 ENSMUST00000231634 Gm8376 processed_pseudogene Interval_23855 chr11 27149077 27149292 + 0 NA Intergenic Intergenic -62049 ENSMUSG00000088654.1 ENSMUSG00000088654 ENSMUST00000158029 Gm24850 snoRNA Interval_98675 chr2 154187439 154188133 + 0 NA Intergenic Intergenic -3037 ENSMUSG00000027485.15 ENSMUSG00000027485 ENSMUST00000028987 Bpifb1 protein_coding Interval_94169 chr2 84815433 84816865 + 0 NA intron (ENSMUSG00000027077.7, intron 4 of 7) protein_coding-intron (ENSMUSG00000027077.7, intron 4 of 7) 6503 ENSMUSG00000027077.7 ENSMUSG00000027077 ENSMUST00000028471 Smtnl1 protein_coding Interval_53127 chr14 54605936 54606485 + 0 NA promoter-TSS (ENSMUSG00000022179.5) protein_coding-promoter-TSS (ENSMUSG00000022179.5) 10575 ENSMUSG00000076128.1 ENSMUSG00000076128 ENSMUST00000102174 Mir686 miRNA Interval_172191 chrX 8653617 8654052 + 0 NA promoter-TSS (ENSMUSG00000082496.3) processed_pseudogene-promoter-TSS (ENSMUSG00000082496.3) -631 ENSMUSG00000082496.3 ENSMUSG00000082496 ENSMUST00000119961 Gm6798 processed_pseudogene Interval_161818 chr8 122986426 122987555 + 0 NA intron (ENSMUSG00000035569.17, intron 1 of 2) protein_coding-intron (ENSMUSG00000035569.17, intron 1 of 12) -4047 ENSMUSG00000065915.1 ENSMUSG00000065915 ENSMUST00000083981 Gm24445 snRNA Interval_68083 chr16 64897044 64897242 + 0 NA Intergenic Intergenic -14130 ENSMUSG00000097999.1 ENSMUSG00000097999 ENSMUST00000182707 Gm9061 processed_pseudogene Interval_119672 chr4 139136009 139136517 + 0 NA Intergenic Intergenic -5269 ENSMUSG00000050608.11 ENSMUSG00000050608 ENSMUST00000154642 Micos10 protein_coding Interval_7427 chr1 131240598 131241201 + 0 NA intron (ENSMUSG00000026430.16, intron 1 of 2) protein_coding-intron (ENSMUSG00000026430.16, intron 1 of 5) -7324 ENSMUSG00000026430.16 ENSMUSG00000026430 ENSMUST00000124796 Rassf5 protein_coding Interval_107846 chr3 116204055 116204430 + 0 NA Intergenic Intergenic 3834 ENSMUSG00000104607.1 ENSMUSG00000104607 ENSMUST00000198864 Gm31651 lincRNA Interval_33782 chr11 118467569 118468169 + 0 NA Intergenic Intergenic -9072 ENSMUSG00000033857.12 ENSMUSG00000033857 ENSMUST00000168689 Engase protein_coding Interval_16850 chr10 69249470 69250416 + 0 NA TTS (ENSMUSG00000019944.14) protein_coding-TTS (ENSMUSG00000019944.14) 30558 ENSMUSG00000019944.14 ENSMUSG00000019944 ENSMUST00000165765 Rhobtb1 protein_coding Interval_97660 chr2 142344144 142344487 + 0 NA intron (ENSMUSG00000068205.14, intron 11 of 13) protein_coding-intron (ENSMUSG00000068205.14, intron 16 of 17) -37673 ENSMUSG00000089318.1 ENSMUSG00000089318 ENSMUST00000158693 Gm23179 misc_RNA Interval_33843 chr11 118940431 118940661 + 0 NA Intergenic Intergenic -47670 ENSMUSG00000046697.17 ENSMUSG00000046697 ENSMUST00000106273 Enpp7 protein_coding Interval_32348 chr11 107099051 107099431 + 0 NA intron (ENSMUSG00000040481.17, intron 3 of 29) protein_coding-intron (ENSMUSG00000040481.17, intron 3 of 27) -51898 ENSMUSG00000040481.17 ENSMUSG00000040481 ENSMUST00000149486 Bptf protein_coding Interval_22137 chr11 6558381 6559827 + 0 NA TTS (ENSMUSG00000084231.1) processed_pseudogene-TTS (ENSMUSG00000084231.1) 399 ENSMUSG00000084231.1 ENSMUSG00000084231 ENSMUST00000118772 Gm11975 processed_pseudogene Interval_104393 chr3 65196179 65196511 + 0 NA intron (ENSMUSG00000027827.17, intron 2 of 14) protein_coding-intron (ENSMUSG00000027827.17, intron 1 of 13) 106340 ENSMUSG00000104093.1 ENSMUSG00000104093 ENSMUST00000195489 A330015K06Rik antisense Interval_105041 chr3 80004784 80005334 + 0 NA Intergenic Intergenic -49833 ENSMUSG00000103181.1 ENSMUSG00000103181 ENSMUST00000194077 A330069K06Rik lincRNA Interval_28547 chr11 76651250 76651704 + 0 NA Intergenic Intergenic -20993 ENSMUSG00000044243.3 ENSMUSG00000044243 ENSMUST00000056184 Bhlha9 protein_coding Interval_77200 chr17 87314429 87315498 + 0 NA intron (ENSMUSG00000036918.16, intron 1 of 5) protein_coding-intron (ENSMUSG00000036918.16, intron 5 of 19) 17089 ENSMUSG00000089701.1 ENSMUSG00000089701 ENSMUST00000161043 Gm15978 antisense Interval_143791 chr7 16326005 16326813 + 0 NA TTS (ENSMUSG00000052833.9) protein_coding-TTS (ENSMUSG00000052833.9) 18016 ENSMUSG00000002083.13 ENSMUSG00000002083 ENSMUST00000147267 Bbc3 protein_coding Interval_89705 chr2 24852394 24852880 + 0 NA promoter-TSS (ENSMUSG00000036893.17) protein_coding-promoter-TSS (ENSMUSG00000036893.17) 11286 ENSMUSG00000036893.17 ENSMUSG00000036893 ENSMUST00000150379 Ehmt1 protein_coding Interval_16554 chr10 63598550 63599258 + 0 NA intron (ENSMUSG00000060843.11, intron 5 of 17) protein_coding-intron (ENSMUSG00000060843.11, intron 4 of 16) -177115 ENSMUSG00000048185.5 ENSMUSG00000048185 ENSMUST00000054760 Gm7075 protein_coding Interval_38234 chr12 76556582 76558570 + 0 NA intron (ENSMUSG00000052609.9, intron 2 of 3) protein_coding-intron (ENSMUSG00000052609.9, intron 1 of 18) -9724 ENSMUSG00000112388.1 ENSMUSG00000112388 ENSMUST00000218453 AI463170 antisense Interval_163662 chr9 23563326 23564469 + 0 NA Intergenic Intergenic -212595 ENSMUSG00000111041.1 ENSMUSG00000111041 ENSMUST00000215669 Gm3011 processed_pseudogene Interval_73445 chr17 37309115 37309333 + 0 NA Intergenic Intergenic -6592 ENSMUSG00000092077.2 ENSMUSG00000092077 ENSMUST00000058046 Olfr101 protein_coding Interval_141416 chr6 128116640 128117272 + 0 NA intron (ENSMUSG00000030352.15, intron 1 of 6) protein_coding-intron (ENSMUSG00000030352.15, intron 1 of 8) -21930 ENSMUSG00000076327.1 ENSMUSG00000076327 ENSMUST00000102372 Gm26338 miRNA Interval_141363 chr6 127683779 127684310 + 0 NA Intergenic Intergenic 39604 ENSMUSG00000107253.1 ENSMUSG00000107253 ENSMUST00000202671 Gm43634 lincRNA Interval_29890 chr11 87542094 87542724 + 0 NA promoter-TSS (ENSMUSG00000010342.16) protein_coding-promoter-TSS (ENSMUSG00000010342.16) -24244 ENSMUSG00000020486.19 ENSMUSG00000020486 ENSMUST00000143950 Septin4 protein_coding Interval_78969 chr18 23393509 23394035 + 0 NA Intergenic Intergenic -103063 ENSMUSG00000024302.16 ENSMUSG00000024302 ENSMUST00000222726 Dtna protein_coding Interval_161243 chr8 119137454 119137692 + 0 NA intron (ENSMUSG00000031841.19, intron 7 of 7) protein_coding-intron (ENSMUSG00000031841.19, intron 7 of 13) -13892 ENSMUSG00000031841.19 ENSMUSG00000031841 ENSMUST00000151842 Cdh13 protein_coding Interval_168713 chr9 86236470 86236867 + 0 NA Intergenic Intergenic -60653 ENSMUSG00000111418.1 ENSMUSG00000111418 ENSMUST00000216119 Gm18016 processed_pseudogene Interval_91154 chr2 35501036 35504345 + 0 NA promoter-TSS (ENSMUSG00000085668.2) lincRNA-promoter-TSS (ENSMUSG00000085668.2) -841 ENSMUSG00000085668.2 ENSMUSG00000085668 ENSMUST00000130083 Gm35202 lincRNA Interval_173613 chrX 100916910 100917868 + 0 NA intron (ENSMUSG00000009670.11, intron 17 of 29) protein_coding-intron (ENSMUSG00000009670.11, intron 17 of 29) -88432 ENSMUSG00000089205.1 ENSMUSG00000089205 ENSMUST00000158580 Gm24577 snRNA Interval_70441 chr17 10258825 10259149 + 0 NA intron (ENSMUSG00000062078.15, intron 1 of 4) protein_coding-intron (ENSMUSG00000062078.15, intron 3 of 6) 60374 ENSMUSG00000062078.15 ENSMUSG00000062078 ENSMUST00000233684 Qk protein_coding Interval_2300 chr1 37903318 37903574 + 0 NA Intergenic Intergenic 9511 ENSMUSG00000026087.11 ENSMUSG00000026087 ENSMUST00000162513 Mrpl30 protein_coding Interval_100415 chr2 168902733 168903090 + 0 NA intron (ENSMUSG00000027551.15, intron 7 of 8) protein_coding-intron (ENSMUSG00000027551.15, intron 7 of 8) -20743 ENSMUSG00000077761.1 ENSMUSG00000077761 ENSMUST00000104573 Gm25214 snoRNA Interval_81911 chr18 65788344 65789419 + 0 NA Intergenic Intergenic -11674 ENSMUSG00000024516.13 ENSMUSG00000024516 ENSMUST00000235765 Sec11c protein_coding Interval_10566 chr1 171903789 171904870 + 0 NA Intergenic Intergenic 8665 ENSMUSG00000073492.2 ENSMUSG00000073492 ENSMUST00000097466 Gm10521 protein_coding Interval_62925 chr15 97948909 97949495 + 0 NA Intergenic Intergenic 13917 ENSMUSG00000089233.1 ENSMUSG00000089233 ENSMUST00000158608 Gm22202 misc_RNA Interval_53351 chr14 56544696 56546126 + 0 NA intron (ENSMUSG00000064128.8, intron 2 of 6) protein_coding-intron (ENSMUSG00000064128.8, intron 8 of 16) 7074 ENSMUSG00000064128.8 ENSMUSG00000064128 ENSMUST00000224748 Cenpj protein_coding Interval_80007 chr18 36602391 36603824 + 0 NA intron (ENSMUSG00000024483.19, intron 10 of 33) protein_coding-intron (ENSMUSG00000024483.19, intron 10 of 33) -6851 ENSMUSG00000085172.1 ENSMUSG00000085172 ENSMUST00000153606 Gm6542 processed_pseudogene Interval_55254 chr14 79684521 79685860 + 0 NA Intergenic Intergenic 17220 ENSMUSG00000115740.1 ENSMUSG00000115740 ENSMUST00000226962 Gm49042 lincRNA Interval_159014 chr8 88813295 88813496 + 0 NA Intergenic Intergenic 7004 ENSMUSG00000056772.3 ENSMUSG00000056772 ENSMUST00000079841 Rps6-ps2 processed_pseudogene Interval_150784 chr7 114478546 114479593 + 0 NA intron (ENSMUSG00000030671.9, intron 1 of 15) protein_coding-intron (ENSMUSG00000030671.9, intron 1 of 15) -28073 ENSMUSG00000030671.9 ENSMUSG00000030671 ENSMUST00000149455 Pde3b protein_coding Interval_164524 chr9 37741207 37741634 + 0 NA Intergenic Intergenic -3686 ENSMUSG00000063350.6 ENSMUSG00000063350 ENSMUST00000115004 Olfr874 protein_coding Interval_17771 chr10 79988537 79988913 + 0 NA exon (ENSMUSG00000004665.10, exon 1 of 7) protein_coding-exon (ENSMUSG00000004665.10, exon 1 of 7) 102 ENSMUSG00000004665.10 ENSMUSG00000004665 ENSMUST00000105374 Cnn2 protein_coding Interval_134897 chr6 33307490 33307824 + 0 NA intron (ENSMUSG00000029763.17, intron 5 of 6) protein_coding-intron (ENSMUSG00000029763.17, intron 5 of 17) -25760 ENSMUSG00000029763.17 ENSMUSG00000029763 ENSMUST00000134653 Exoc4 protein_coding Interval_61738 chr15 83683070 83683324 + 0 NA intron (ENSMUSG00000016763.15, intron 3 of 21) protein_coding-intron (ENSMUSG00000016763.15, intron 3 of 22) -69458 ENSMUSG00000016763.15 ENSMUSG00000016763 ENSMUST00000229057 Scube1 protein_coding Interval_99967 chr2 166162705 166163441 + 0 NA Intergenic Intergenic -7410 ENSMUSG00000006800.14 ENSMUSG00000006800 ENSMUST00000133395 Sulf2 protein_coding Interval_61762 chr15 83924411 83925075 + 0 NA intron (ENSMUSG00000022441.17, intron 3 of 3) protein_coding-intron (ENSMUSG00000022441.17, intron 2 of 14) 21856 ENSMUSG00000022441.17 ENSMUSG00000022441 ENSMUST00000122836 Efcab6 protein_coding Interval_24791 chr11 38013201 38013666 + 0 NA Intergenic Intergenic 23830 ENSMUSG00000093184.1 ENSMUSG00000093184 ENSMUST00000175443 Gm25693 miRNA Interval_101402 chr2 181071780 181072587 + 0 NA Intergenic Intergenic 37573 ENSMUSG00000016346.17 ENSMUSG00000016346 ENSMUST00000140789 Kcnq2 protein_coding Interval_153059 chr7 141103427 141103814 + 0 NA promoter-TSS (ENSMUSG00000054662.8) protein_coding-promoter-TSS (ENSMUSG00000054662.8) 2417 ENSMUSG00000088542.1 ENSMUSG00000088542 ENSMUST00000157917 Gm24962 snRNA Interval_157792 chr8 73268015 73268205 + 0 NA intron (ENSMUSG00000004383.18, intron 1 of 14) protein_coding-intron (ENSMUSG00000004383.18, intron 1 of 14) 85430 ENSMUSG00000004383.18 ENSMUSG00000004383 ENSMUST00000146249 Large1 protein_coding Interval_119737 chr4 139598926 139599717 + 0 NA intron (ENSMUSG00000041025.15, intron 1 of 8) protein_coding-intron (ENSMUSG00000041025.15, intron 3 of 10) -3865 ENSMUSG00000094439.1 ENSMUSG00000094439 ENSMUST00000178644 Gm21969 protein_coding Interval_85338 chr19 24961302 24961950 + 0 NA promoter-TSS (ENSMUSG00000024878.9) protein_coding-promoter-TSS (ENSMUSG00000024878.9) -19259 ENSMUSG00000095097.1 ENSMUSG00000095097 ENSMUST00000083233 Gm23658 snoRNA Interval_15996 chr10 59993868 59994377 + 0 NA intron (ENSMUSG00000020107.10, intron 1 of 2) protein_coding-intron (ENSMUSG00000020107.10, intron 3 of 4) 4188 ENSMUSG00000020107.10 ENSMUSG00000020107 ENSMUST00000183113 Anapc16 protein_coding Interval_148435 chr7 81221093 81221287 + 0 NA intron (ENSMUSG00000025584.17, intron 1 of 21) protein_coding-intron (ENSMUSG00000025584.17, intron 1 of 21) 1684 ENSMUSG00000083774.1 ENSMUSG00000083774 ENSMUST00000121753 Gm7180 processed_pseudogene Interval_103874 chr3 54047906 54048407 + 0 NA Intergenic Intergenic 18164 ENSMUSG00000105067.1 ENSMUSG00000105067 ENSMUST00000198273 Gm18018 processed_pseudogene Interval_80235 chr18 38451774 38452009 + 0 NA intron (ENSMUSG00000024425.4, intron 1 of 3) protein_coding-intron (ENSMUSG00000024425.4, intron 4 of 7) 581 ENSMUSG00000024425.4 ENSMUSG00000024425 ENSMUST00000238135 Ndfip1 protein_coding Interval_155603 chr8 35070191 35070768 + 0 NA Intergenic Intergenic -17096 ENSMUSG00000110361.1 ENSMUSG00000110361 ENSMUST00000209635 Gm8291 processed_pseudogene Interval_152347 chr7 132164485 132165147 + 0 NA intron (ENSMUSG00000030849.18, intron 2 of 6) protein_coding-intron (ENSMUSG00000030849.18, intron 2 of 6) 10645 ENSMUSG00000086814.1 ENSMUSG00000086814 ENSMUST00000152302 Gm15677 antisense Interval_14158 chr10 28176559 28177192 + 0 NA intron (ENSMUSG00000019889.10, intron 1 of 2) protein_coding-intron (ENSMUSG00000019889.10, intron 1 of 31) 37246 ENSMUSG00000076377.1 ENSMUSG00000076377 ENSMUST00000102422 Gm22370 miRNA Interval_84054 chr19 6985438 6985657 + 0 NA TTS (ENSMUSG00000024962.13) protein_coding-TTS (ENSMUSG00000024962.13) 1593 ENSMUSG00000024962.13 ENSMUSG00000024962 ENSMUST00000147924 Vegfb protein_coding Interval_13885 chr10 24223021 24224544 + 0 NA exon (ENSMUSG00000020000.7, exon 1 of 12) protein_coding-exon (ENSMUSG00000020000.7, exon 1 of 12) 237 ENSMUSG00000020000.7 ENSMUSG00000020000 ENSMUST00000154916 Moxd1 protein_coding Interval_39329 chr12 86770531 86772316 + 0 NA Intergenic Intergenic 37054 ENSMUSG00000059114.8 ENSMUSG00000059114 ENSMUST00000223197 Lrrc74a protein_coding Interval_172788 chrX 49102361 49102667 + 0 NA intron (ENSMUSG00000031109.16, intron 2 of 4) protein_coding-intron (ENSMUSG00000031109.16, intron 3 of 15) -21762 ENSMUSG00000031109.16 ENSMUSG00000031109 ENSMUST00000141393 Enox2 protein_coding Interval_153645 chr8 4249073 4250884 + 0 NA promoter-TSS (ENSMUSG00000089736.2) protein_coding-promoter-TSS (ENSMUSG00000089736.2) 1100 ENSMUSG00000089736.2 ENSMUSG00000089736 ENSMUST00000208029 Tgfbr3l protein_coding Interval_26717 chr11 59952583 59953422 + 0 NA intron (ENSMUSG00000061650.6, intron 1 of 1) protein_coding-intron (ENSMUSG00000061650.6, intron 1 of 1) 4796 ENSMUSG00000061650.6 ENSMUSG00000061650 ENSMUST00000081980 Med9 protein_coding Interval_117830 chr4 126464944 126466548 + 0 NA intron (ENSMUSG00000041530.17, intron 1 of 18) protein_coding-intron (ENSMUSG00000041530.17, intron 1 of 18) 2675 ENSMUSG00000041530.17 ENSMUSG00000041530 ENSMUST00000149425 Ago1 protein_coding Interval_113760 chr4 58413358 58414563 + 0 NA Intergenic Intergenic 27138 ENSMUSG00000093293.1 ENSMUSG00000093293 ENSMUST00000175552 Mir3095 miRNA Interval_141953 chr6 135833555 135833985 + 0 NA intron (ENSMUSG00000030209.14, intron 6 of 14) protein_coding-intron (ENSMUSG00000030209.14, intron 5 of 13) -41735 ENSMUSG00000086614.2 ENSMUSG00000086614 ENSMUST00000155455 Gm14330 antisense Interval_123659 chr5 34353872 34354649 + 0 NA TTS (ENSMUSG00000029110.13) protein_coding-TTS (ENSMUSG00000029110.13) 3144 ENSMUSG00000029110.13 ENSMUSG00000029110 ENSMUST00000183265 Rnf4 protein_coding Interval_99335 chr2 159234707 159235429 + 0 NA Intergenic Intergenic 95707 ENSMUSG00000077188.1 ENSMUSG00000077188 ENSMUST00000104000 Gm25090 snoRNA Interval_10158 chr1 166164402 166164727 + 0 NA intron (ENSMUSG00000000544.14, intron 5 of 7) protein_coding-intron (ENSMUSG00000000544.14, intron 5 of 6) 34097 ENSMUSG00000000544.14 ENSMUSG00000000544 ENSMUST00000166860 Gpa33 protein_coding Interval_54287 chr14 67175926 67177172 + 0 NA intron (ENSMUSG00000114697.1, intron 2 of 6) lincRNA-intron (ENSMUSG00000114697.1, intron 2 of 6) 6961 ENSMUSG00000114697.1 ENSMUSG00000114697 ENSMUST00000225163 Gm30806 lincRNA Interval_174237 chrX 140485266 140485941 + 0 NA Intergenic Intergenic 28990 ENSMUSG00000031432.3 ENSMUSG00000031432 ENSMUST00000033809 Prps1 protein_coding Interval_132139 chr5 142920785 142921133 + 0 NA Intergenic Intergenic -17305 ENSMUSG00000029580.14 ENSMUSG00000029580 ENSMUST00000164765 Actb protein_coding Interval_71193 chr17 21047856 21048255 + 0 NA Intergenic Intergenic 12721 ENSMUSG00000101511.1 ENSMUSG00000101511 ENSMUST00000189217 Gm5681 unprocessed_pseudogene Interval_95801 chr2 116662248 116662421 + 0 NA Intergenic Intergenic -133844 ENSMUSG00000081787.1 ENSMUSG00000081787 ENSMUST00000120190 Gm13991 processed_pseudogene Interval_114843 chr4 86192623 86193027 + 0 NA intron (ENSMUSG00000066113.16, intron 4 of 8) protein_coding-intron (ENSMUSG00000066113.16, intron 4 of 12) -149331 ENSMUSG00000064687.1 ENSMUSG00000064687 ENSMUST00000082753 Gm25811 snRNA Interval_169342 chr9 96522822 96524334 + 0 NA intron (ENSMUSG00000099564.2, intron 1 of 10) protein_coding-intron (ENSMUSG00000099564.2, intron 1 of 10) 1686 ENSMUSG00000099564.2 ENSMUSG00000099564 ENSMUST00000190704 Gm28729 protein_coding Interval_143277 chr7 4914789 4915876 + 0 NA exon (ENSMUSG00000074406.5, exon 1 of 3) protein_coding-exon (ENSMUSG00000074406.5, exon 1 of 3) 115 ENSMUSG00000074406.5 ENSMUSG00000074406 ENSMUST00000116354 Zfp628 protein_coding Interval_81038 chr18 53232302 53232662 + 0 NA Intergenic Intergenic -10596 ENSMUSG00000118240.1 ENSMUSG00000118240 ENSMUST00000235759 Gm1859 processed_pseudogene Interval_41593 chr12 116634140 116635326 + 0 NA intron (ENSMUSG00000056553.14, intron 2 of 4) protein_coding-intron (ENSMUSG00000056553.14, intron 2 of 22) 37480 ENSMUSG00000101814.1 ENSMUSG00000101814 ENSMUST00000186869 Gm17807 processed_pseudogene Interval_30320 chr11 93593930 93594742 + 0 NA intron (ENSMUSG00000056158.14, intron 6 of 8) protein_coding-intron (ENSMUSG00000056158.14, intron 7 of 9) -56423 ENSMUSG00000082453.1 ENSMUSG00000082453 ENSMUST00000120917 Gm11502 processed_pseudogene Interval_47448 chr13 84375618 84376079 + 0 NA Intergenic Intergenic -35735 ENSMUSG00000098245.1 ENSMUSG00000098245 ENSMUST00000182385 Gm26927 processed_pseudogene Interval_118471 chr4 131890872 131891309 + 0 NA intron (ENSMUSG00000028911.16, intron 3 of 5) protein_coding-intron (ENSMUSG00000028911.16, intron 1 of 5) 6795 ENSMUSG00000028911.16 ENSMUSG00000028911 ENSMUST00000030743 Srsf4 protein_coding Interval_156716 chr8 57569217 57570163 + 0 NA intron (ENSMUSG00000031608.13, intron 2 of 5) protein_coding-intron (ENSMUSG00000031608.13, intron 2 of 11) 19391 ENSMUSG00000070025.8 ENSMUSG00000070025 ENSMUST00000145057 Gm10284 processed_pseudogene Interval_70964 chr17 16875683 16875963 + 0 NA Intergenic Intergenic 6905 ENSMUSG00000116623.1 ENSMUSG00000116623 ENSMUST00000231561 Gm49775 processed_pseudogene Interval_34137 chr11 120844647 120844865 + 0 NA intron (ENSMUSG00000048445.6, intron 5 of 5) protein_coding-intron (ENSMUSG00000048445.6, intron 18 of 18) 13727 ENSMUSG00000087638.1 ENSMUSG00000087638 ENSMUST00000138256 Gm11773 antisense Interval_94711 chr2 93592157 93593098 + 0 NA Intergenic Intergenic -49761 ENSMUSG00000040310.12 ENSMUSG00000040310 ENSMUST00000111254 Alx4 protein_coding Interval_43178 chr13 24878065 24878472 + 0 NA intron (ENSMUSG00000006711.15, intron 12 of 19) protein_coding-intron (ENSMUSG00000006711.15, intron 12 of 20) -14813 ENSMUSG00000006711.15 ENSMUSG00000006711 ENSMUST00000171262 D130043K22Rik protein_coding Interval_150859 chr7 115867664 115869014 + 0 NA intron (ENSMUSG00000051910.13, intron 2 of 11) protein_coding-intron (ENSMUSG00000051910.13, intron 2 of 16) -22188 ENSMUSG00000051910.13 ENSMUSG00000051910 ENSMUST00000206912 Sox6 protein_coding Interval_123675 chr5 34438871 34440556 + 0 NA intron (ENSMUSG00000037210.16, intron 3 of 5) protein_coding-intron (ENSMUSG00000037210.16, intron 4 of 16) 8494 ENSMUSG00000037210.16 ENSMUSG00000037210 ENSMUST00000181379 Fam193a protein_coding Interval_32751 chr11 110345783 110346358 + 0 NA Intergenic Intergenic -8354 ENSMUSG00000018800.14 ENSMUSG00000018800 ENSMUST00000148984 Abca5 protein_coding Interval_49246 chr13 109793735 109793981 + 0 NA intron (ENSMUSG00000021699.17, intron 6 of 15) protein_coding-intron (ENSMUSG00000021699.17, intron 5 of 14) -109951 ENSMUSG00000084651.1 ENSMUSG00000084651 ENSMUST00000122702 Mir1904 miRNA Interval_151624 chr7 125444128 125445507 + 0 NA intron (ENSMUSG00000030752.8, intron 1 of 4) protein_coding-intron (ENSMUSG00000030752.8, intron 1 of 7) 133 ENSMUSG00000030752.8 ENSMUSG00000030752 ENSMUST00000135129 Kdm8 protein_coding Interval_50471 chr14 13823609 13824512 + 0 NA intron (ENSMUSG00000084902.2, intron 17 of 18) protein_coding-intron (ENSMUSG00000084902.2, intron 17 of 18) -32000 ENSMUSG00000114480.1 ENSMUSG00000114480 ENSMUST00000225631 Gm3637 processed_pseudogene Interval_83599 chr18 90462913 90463132 + 0 NA intron (ENSMUSG00000117805.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000117805.1, intron 1 of 1) 20438 ENSMUSG00000117805.1 ENSMUSG00000117805 ENSMUST00000237124 Gm18280 lincRNA Interval_149501 chr7 99164813 99165052 + 0 NA intron (ENSMUSG00000030747.5, intron 4 of 5) protein_coding-intron (ENSMUSG00000030747.5, intron 3 of 7) 17787 ENSMUSG00000030747.5 ENSMUSG00000030747 ENSMUST00000207893 Dgat2 protein_coding Interval_158826 chr8 86894348 86895939 + 0 NA Intergenic Intergenic -7310 ENSMUSG00000098534.1 ENSMUSG00000098534 ENSMUST00000183752 Gm27167 lincRNA Interval_80354 chr18 39877899 39878073 + 0 NA Intergenic Intergenic 51388 ENSMUSG00000118015.1 ENSMUSG00000118015 ENSMUST00000237624 Gm41708 lincRNA Interval_127968 chr5 109950016 109950794 + 0 NA Intergenic Intergenic 9979 ENSMUSG00000090015.8 ENSMUSG00000090015 ENSMUST00000170826 Gm15446 protein_coding Interval_141238 chr6 126233890 126234273 + 0 NA Intergenic Intergenic -69121 ENSMUSG00000049107.13 ENSMUSG00000049107 ENSMUST00000050484 Ntf3 protein_coding Interval_143353 chr7 6080919 6082403 + 0 NA intron (ENSMUSG00000034690.13, intron 4 of 8) protein_coding-intron (ENSMUSG00000034690.13, intron 5 of 9) 21154 ENSMUSG00000034690.13 ENSMUSG00000034690 ENSMUST00000207267 Nlrp4c protein_coding Interval_49690 chr13 114010245 114011620 + 0 NA intron (ENSMUSG00000042348.10, intron 5 of 5) protein_coding-intron (ENSMUSG00000042348.10, intron 4 of 4) 109484 ENSMUSG00000114696.1 ENSMUSG00000114696 ENSMUST00000223997 Gm47479 TEC Interval_144110 chr7 19464467 19465251 + 0 NA intron (ENSMUSG00000011263.16, intron 1 of 11) protein_coding-intron (ENSMUSG00000011263.16, intron 1 of 11) 1528 ENSMUSG00000011263.16 ENSMUSG00000011263 ENSMUST00000011407 Exoc3l2 protein_coding Interval_56101 chr14 105740941 105741926 + 0 NA Intergenic Intergenic 59604 ENSMUSG00000060143.7 ENSMUSG00000060143 ENSMUST00000227553 Gm10076 lincRNA Interval_156540 chr8 50164912 50165202 + 0 NA intron (ENSMUSG00000109838.1, intron 3 of 4) lincRNA-intron (ENSMUSG00000109838.1, intron 3 of 4) -151673 ENSMUSG00000110375.1 ENSMUSG00000110375 ENSMUST00000209853 Gm45323 lincRNA Interval_60814 chr15 76917531 76918092 + 0 NA intron (ENSMUSG00000054967.7, intron 4 of 4) protein_coding-intron (ENSMUSG00000054967.7, intron 1 of 3) 7580 ENSMUSG00000054967.7 ENSMUSG00000054967 ENSMUST00000230677 Zfp647 protein_coding Interval_76596 chr17 82231566 82231756 + 0 NA TTS (ENSMUSG00000088817.1) snoRNA-TTS (ENSMUSG00000088817.1) 611 ENSMUSG00000088817.1 ENSMUSG00000088817 ENSMUST00000158192 Gm22386 snoRNA Interval_24160 chr11 30805510 30805867 + 0 NA intron (ENSMUSG00000040850.17, intron 6 of 46) protein_coding-intron (ENSMUSG00000040850.17, intron 6 of 46) 16982 ENSMUSG00000086986.3 ENSMUSG00000086986 ENSMUST00000121892 Gm12103 processed_pseudogene Interval_35224 chr12 18467001 18467576 + 0 NA Intergenic Intergenic -38434 ENSMUSG00000113436.1 ENSMUSG00000113436 ENSMUST00000222355 Gm48392 processed_pseudogene Interval_140938 chr6 122873919 122875053 + 0 NA promoter-TSS (ENSMUSG00000030327.8) protein_coding-promoter-TSS (ENSMUSG00000030327.8) -63 ENSMUSG00000030327.8 ENSMUSG00000030327 ENSMUST00000203476 Necap1 protein_coding Interval_7678 chr1 132996701 132997492 + 0 NA intron (ENSMUSG00000054387.13, intron 6 of 6) protein_coding-intron (ENSMUSG00000054387.13, intron 8 of 10) 28261 ENSMUSG00000054387.13 ENSMUSG00000054387 ENSMUST00000186645 Mdm4 protein_coding Interval_38522 chr12 79846120 79846657 + 0 NA Intergenic Intergenic 79106 ENSMUSG00000112765.1 ENSMUSG00000112765 ENSMUST00000219857 9430078K24Rik lincRNA Interval_98871 chr2 155691740 155692660 + 0 NA promoter-TSS (ENSMUSG00000038324.13) protein_coding-promoter-TSS (ENSMUSG00000038324.13) 21118 ENSMUSG00000038312.10 ENSMUSG00000038312 ENSMUST00000139868 Edem2 protein_coding Interval_148663 chr7 83955222 83955519 + 0 NA exon (ENSMUSG00000052353.13, exon 20 of 29) protein_coding-exon (ENSMUSG00000052353.13, exon 20 of 29) 60317 ENSMUSG00000038503.15 ENSMUSG00000038503 ENSMUST00000207373 Mesd protein_coding Interval_139885 chr6 112378735 112379462 + 0 NA intron (ENSMUSG00000034387.13, intron 7 of 11) protein_coding-intron (ENSMUSG00000034387.13, intron 7 of 11) 8920 ENSMUSG00000034387.13 ENSMUSG00000034387 ENSMUST00000238755 Ssu2 protein_coding Interval_13051 chr10 10472113 10472708 + 0 NA promoter-TSS (ENSMUSG00000050994.20) protein_coding-promoter-TSS (ENSMUSG00000050994.20) -96 ENSMUSG00000050994.20 ENSMUSG00000050994 ENSMUST00000132573 Adgb protein_coding Interval_143510 chr7 11191256 11191749 + 0 NA Intergenic Intergenic 9102 ENSMUSG00000110379.1 ENSMUSG00000110379 ENSMUST00000209825 Gm6909 unprocessed_pseudogene Interval_36159 chr12 37106863 37109659 + 0 NA promoter-TSS (ENSMUSG00000036144.6) protein_coding-promoter-TSS (ENSMUSG00000036144.6) -279 ENSMUSG00000036144.6 ENSMUSG00000036144 ENSMUST00000041183 Meox2 protein_coding Interval_155179 chr8 27226864 27228684 + 0 NA promoter-TSS (ENSMUSG00000109674.1) antisense-promoter-TSS (ENSMUSG00000109674.1) -3946 ENSMUSG00000039720.7 ENSMUSG00000039720 ENSMUST00000209299 Got1l1 protein_coding Interval_12640 chr10 4085478 4086114 + 0 NA intron (ENSMUSG00000040675.17, intron 21 of 27) protein_coding-intron (ENSMUSG00000040675.17, intron 21 of 27) -18517 ENSMUSG00000065792.1 ENSMUSG00000065792 ENSMUST00000083858 Gm25515 snRNA Interval_108170 chr3 122134815 122135278 + 0 NA exon (ENSMUSG00000028125.14, exon 27 of 50) protein_coding-exon (ENSMUSG00000028125.14, exon 27 of 50) 17573 ENSMUSG00000105351.1 ENSMUSG00000105351 ENSMUST00000198223 Gm43157 processed_pseudogene Interval_135987 chr6 49257741 49258139 + 0 NA intron (ENSMUSG00000029817.11, intron 1 of 8) protein_coding-intron (ENSMUSG00000029817.11, intron 1 of 7) 3089 ENSMUSG00000107962.1 ENSMUSG00000107962 ENSMUST00000204899 Gm43980 TEC Interval_122387 chr5 21894250 21895345 + 0 NA promoter-TSS (ENSMUSG00000042453.14) protein_coding-promoter-TSS (ENSMUSG00000042453.14) 4249 ENSMUSG00000042453.14 ENSMUSG00000042453 ENSMUST00000161782 Reln protein_coding Interval_155320 chr8 31223886 31224184 + 0 NA intron (ENSMUSG00000046152.16, intron 3 of 3) protein_coding-intron (ENSMUSG00000046152.16, intron 3 of 4) -8684 ENSMUSG00000083588.1 ENSMUSG00000083588 ENSMUST00000120464 Gm8051 processed_pseudogene Interval_82638 chr18 75563134 75563571 + 0 NA intron (ENSMUSG00000052928.9, intron 7 of 11) protein_coding-intron (ENSMUSG00000052928.9, intron 7 of 11) 48707 ENSMUSG00000097712.1 ENSMUSG00000097712 ENSMUST00000181913 Gm10532 antisense Interval_103565 chr3 49756331 49757836 + 0 NA exon (ENSMUSG00000037892.13, exon 1 of 4) protein_coding-exon (ENSMUSG00000037892.13, exon 1 of 4) 200 ENSMUSG00000037892.13 ENSMUSG00000037892 ENSMUST00000195086 Pcdh18 protein_coding Interval_53229 chr14 55367838 55368070 + 0 NA Intergenic Intergenic -15643 ENSMUSG00000115322.1 ENSMUSG00000115322 ENSMUST00000226206 Gm49023 unprocessed_pseudogene Interval_127980 chr5 110051079 110051513 + 0 NA intron (ENSMUSG00000090963.2, intron 1 of 3) protein_coding-intron (ENSMUSG00000090963.2, intron 1 of 3) 21217 ENSMUSG00000090963.2 ENSMUSG00000090963 ENSMUST00000167969 Gm17655 protein_coding Interval_39885 chr12 99360866 99361737 + 0 NA exon (ENSMUSG00000113106.1, exon 1 of 1) TEC-exon (ENSMUSG00000113106.1, exon 1 of 1) 727 ENSMUSG00000113106.1 ENSMUSG00000113106 ENSMUST00000221888 Gm47139 TEC Interval_79558 chr18 33771275 33771853 + 0 NA Intergenic Intergenic -23375 ENSMUSG00000087590.2 ENSMUSG00000087590 ENSMUST00000179138 Epb41l4aos lincRNA Interval_41261 chr12 112214016 112214762 + 0 NA Intergenic Intergenic -9236 ENSMUSG00000113282.1 ENSMUSG00000113282 ENSMUST00000220716 Gm20368 processed_pseudogene Interval_150941 chr7 116519507 116520228 + 0 NA intron (ENSMUSG00000030659.14, intron 2 of 12) protein_coding-intron (ENSMUSG00000030659.14, intron 2 of 13) -8945 ENSMUSG00000030659.14 ENSMUSG00000030659 ENSMUST00000183335 Nucb2 protein_coding Interval_39751 chr12 96847576 96848595 + 0 NA Intergenic Intergenic 74973 ENSMUSG00000043483.4 ENSMUSG00000043483 ENSMUST00000052882 Gm6863 processed_pseudogene Interval_52079 chr14 35292385 35292573 + 0 NA intron (ENSMUSG00000041078.7, intron 5 of 15) protein_coding-intron (ENSMUSG00000041078.7, intron 5 of 15) -73041 ENSMUSG00000115826.1 ENSMUSG00000115826 ENSMUST00000227262 Gm49034 processed_pseudogene Interval_70568 chr17 12059321 12059498 + 0 NA intron (ENSMUSG00000023826.16, intron 10 of 10) protein_coding-intron (ENSMUSG00000023826.16, intron 2 of 2) -59920 ENSMUSG00000023827.8 ENSMUSG00000023827 ENSMUST00000167905 Agpat4 protein_coding Interval_7374 chr1 130703939 130704406 + 0 NA intron (ENSMUSG00000026409.14, intron 6 of 12) protein_coding-intron (ENSMUSG00000026409.14, intron 7 of 12) 10404 ENSMUSG00000026409.14 ENSMUSG00000026409 ENSMUST00000186777 Pfkfb2 protein_coding Interval_156852 chr8 61218641 61219052 + 0 NA Intergenic Intergenic -24198 ENSMUSG00000086681.1 ENSMUSG00000086681 ENSMUST00000129408 Gm16178 antisense Interval_81072 chr18 53588036 53588709 + 0 NA Intergenic Intergenic -50734 ENSMUSG00000118362.1 ENSMUSG00000118362 ENSMUST00000235670 Gm19466 lincRNA Interval_150811 chr7 114875186 114875383 + 0 NA Intergenic Intergenic -20713 ENSMUSG00000108683.1 ENSMUSG00000108683 ENSMUST00000206842 Gm45017 lincRNA Interval_86826 chr19 44171815 44173089 + 0 NA intron (ENSMUSG00000037578.4, intron 2 of 13) protein_coding-intron (ENSMUSG00000037578.4, intron 2 of 14) 19990 ENSMUSG00000037578.4 ENSMUSG00000037578 ENSMUST00000161357 Pkd2l1 protein_coding Interval_80958 chr18 51112320 51112993 + 0 NA Intergenic Intergenic -5082 ENSMUSG00000073565.5 ENSMUSG00000073565 ENSMUST00000235541 Prr16 protein_coding Interval_171071 chr9 114379616 114380378 + 0 NA exon (ENSMUSG00000032431.6, exon 5 of 7) protein_coding-exon (ENSMUSG00000032431.6, exon 5 of 7) -1776 ENSMUSG00000032431.6 ENSMUSG00000032431 ENSMUST00000151377 Crtap protein_coding Interval_10628 chr1 172317430 172318848 + 0 NA promoter-TSS (ENSMUSG00000038034.15) protein_coding-promoter-TSS (ENSMUSG00000038034.15) -621 ENSMUSG00000038034.15 ENSMUSG00000038034 ENSMUST00000150598 Igsf8 protein_coding Interval_26622 chr11 59281860 59283149 + 0 NA intron (ENSMUSG00000009900.7, intron 1 of 3) protein_coding-intron (ENSMUSG00000009900.7, intron 1 of 3) 8248 ENSMUSG00000009900.7 ENSMUSG00000009900 ENSMUST00000010044 Wnt3a protein_coding Interval_88307 chr2 3543280 3543713 + 0 NA Intergenic Intergenic -7261 ENSMUSG00000082580.3 ENSMUSG00000082580 ENSMUST00000122241 Gm13182 processed_pseudogene Interval_69216 chr16 91423350 91423939 + 0 NA intron (ENSMUSG00000022969.13, intron 6 of 6) protein_coding-intron (ENSMUSG00000022969.13, intron 6 of 6) 17480 ENSMUSG00000022969.13 ENSMUSG00000022969 ENSMUST00000137612 Il10rb protein_coding Interval_131360 chr5 136706452 136707707 + 0 NA Intergenic Intergenic 9300 ENSMUSG00000005474.9 ENSMUSG00000005474 ENSMUST00000197849 Myl10 protein_coding Interval_25964 chr11 53202098 53203371 + 0 NA Intergenic Intergenic 2050 ENSMUSG00000058073.4 ENSMUSG00000058073 ENSMUST00000117979 Gm11189 processed_pseudogene Interval_24388 chr11 32877847 32878081 + 0 NA Intergenic Intergenic 2976 ENSMUSG00000083303.1 ENSMUSG00000083303 ENSMUST00000121601 Gm12110 processed_pseudogene Interval_171105 chr9 114556241 114557871 + 0 NA intron (ENSMUSG00000079259.2, intron 1 of 3) protein_coding-intron (ENSMUSG00000079259.2, intron 1 of 3) 7313 ENSMUSG00000079259.2 ENSMUSG00000079259 ENSMUST00000111816 Trim71 protein_coding Interval_51830 chr14 32543275 32543567 + 0 NA TTS (ENSMUSG00000054051.7) protein_coding-TTS (ENSMUSG00000054051.7) -9154 ENSMUSG00000054051.7 ENSMUSG00000054051 ENSMUST00000228549 Ercc6 protein_coding Interval_144501 chr7 25486212 25486460 + 0 NA intron (ENSMUSG00000053714.8, intron 4 of 6) antisense-intron (ENSMUSG00000053714.8, intron 4 of 6) -8753 ENSMUSG00000074272.10 ENSMUSG00000074272 ENSMUST00000206981 Ceacam1 protein_coding Interval_136624 chr6 56779424 56780266 + 0 NA exon (ENSMUSG00000059486.11, exon 4 of 4) protein_coding-exon (ENSMUSG00000059486.11, exon 4 of 4) 17434 ENSMUSG00000059486.11 ENSMUSG00000059486 ENSMUST00000124994 Kbtbd2 protein_coding Interval_116932 chr4 118297571 118298554 + 0 NA Intergenic Intergenic -6788 ENSMUSG00000033295.14 ENSMUSG00000033295 ENSMUST00000222620 Ptprf protein_coding Interval_104253 chr3 62089921 62090126 + 0 NA Intergenic Intergenic -20229 ENSMUSG00000104489.1 ENSMUSG00000104489 ENSMUST00000193786 Gm9700 processed_pseudogene Interval_94279 chr2 87422381 87422733 + 0 NA exon (ENSMUSG00000043274.4, exon 2 of 2) protein_coding-exon (ENSMUSG00000043274.4, exon 2 of 2) 5922 ENSMUSG00000043274.4 ENSMUSG00000043274 ENSMUST00000054974 Olfr1123 protein_coding Interval_89153 chr2 17545983 17546577 + 0 NA intron (ENSMUSG00000053702.16, intron 3 of 6) protein_coding-intron (ENSMUSG00000053702.16, intron 3 of 6) -12780 ENSMUSG00000085100.1 ENSMUSG00000085100 ENSMUST00000148607 Gm13324 antisense Interval_47518 chr13 86127600 86127805 + 0 NA Intergenic Intergenic -81355 ENSMUSG00000017778.14 ENSMUSG00000017778 ENSMUST00000017922 Cox7c protein_coding Interval_99509 chr2 162814273 162814620 + 0 NA Intergenic Intergenic 2022 ENSMUSG00000088064.1 ENSMUSG00000088064 ENSMUST00000157439 Gm24478 snRNA Interval_141566 chr6 129349497 129350027 + 0 NA promoter-TSS (ENSMUSG00000053063.11) protein_coding-promoter-TSS (ENSMUSG00000053063.11) 7071 ENSMUSG00000053063.11 ENSMUSG00000053063 ENSMUST00000133756 Clec12a protein_coding Interval_121022 chr4 152276477 152276783 + 0 NA intron (ENSMUSG00000042804.13, intron 1 of 5) protein_coding-intron (ENSMUSG00000042804.13, intron 1 of 5) -5740 ENSMUSG00000042804.13 ENSMUSG00000042804 ENSMUST00000144035 Gpr153 protein_coding Interval_106665 chr3 98280358 98281488 + 0 NA intron (ENSMUSG00000027875.12, intron 1 of 10) protein_coding-intron (ENSMUSG00000027875.12, intron 1 of 9) 488 ENSMUSG00000027875.12 ENSMUSG00000027875 ENSMUST00000090746 Hmgcs2 protein_coding Interval_50063 chr14 7735803 7736116 + 0 NA Intergenic Intergenic -13986 ENSMUSG00000084775.2 ENSMUSG00000084775 ENSMUST00000145085 Gm16741 lincRNA Interval_120372 chr4 148169529 148170379 + 0 NA Intergenic Intergenic 9333 ENSMUSG00000041556.8 ENSMUSG00000041556 ENSMUST00000047951 Fbxo2 protein_coding Interval_91752 chr2 49245779 49246322 + 0 NA promoter-TSS (ENSMUSG00000036792.12) protein_coding-promoter-TSS (ENSMUSG00000036792.12) -120 ENSMUSG00000036792.12 ENSMUSG00000036792 ENSMUST00000196831 Mbd5 protein_coding Interval_153040 chr7 141021524 141021904 + 0 NA Intergenic Intergenic -4156 ENSMUSG00000059108.4 ENSMUSG00000059108 ENSMUST00000081924 Ifitm6 protein_coding Interval_98711 chr2 154455911 154457145 + 0 NA intron (ENSMUSG00000038533.15, intron 1 of 2) protein_coding-intron (ENSMUSG00000038533.15, intron 1 of 10) 19686 ENSMUSG00000038533.15 ENSMUSG00000038533 ENSMUST00000139506 Cbfa2t2 protein_coding Interval_71754 chr17 25879166 25880288 + 0 NA intron (ENSMUSG00000071192.6, intron 1 of 1) protein_coding-intron (ENSMUSG00000071192.6, intron 2 of 2) 1131 ENSMUSG00000071192.6 ENSMUSG00000071192 ENSMUST00000095487 Wfikkn1 protein_coding Interval_106652 chr3 98138654 98138886 + 0 NA exon (ENSMUSG00000027878.11, exon 28 of 34) protein_coding-exon (ENSMUSG00000027878.11, exon 28 of 34) 17182 ENSMUSG00000106427.1 ENSMUSG00000106427 ENSMUST00000200084 Gm42820 TEC Interval_172471 chrX 20861519 20863398 + 0 NA TTS (ENSMUSG00000093408.1) miRNA-TTS (ENSMUSG00000093408.1) 724 ENSMUSG00000093408.1 ENSMUSG00000093408 ENSMUST00000176786 Mir5617 miRNA Interval_171559 chr9 119205094 119205391 + 0 NA intron (ENSMUSG00000074028.4, intron 1 of 9) protein_coding-intron (ENSMUSG00000074028.4, intron 1 of 9) 3856 ENSMUSG00000074028.4 ENSMUSG00000074028 ENSMUST00000084797 Slc22a13 protein_coding Interval_10708 chr1 173398601 173399037 + 0 NA intron (ENSMUSG00000037860.15, intron 2 of 11) protein_coding-intron (ENSMUSG00000037860.15, intron 2 of 11) -31171 ENSMUSG00000005338.13 ENSMUSG00000005338 ENSMUST00000126963 Cadm3 protein_coding Interval_28889 chr11 79087011 79088678 + 0 NA intron (ENSMUSG00000018334.18, intron 1 of 12) protein_coding-intron (ENSMUSG00000018334.18, intron 1 of 18) -28008 ENSMUSG00000018334.18 ENSMUSG00000018334 ENSMUST00000129463 Ksr1 protein_coding Interval_57735 chr15 17508384 17508674 + 0 NA Intergenic Intergenic 83152 ENSMUSG00000080596.1 ENSMUSG00000080596 ENSMUST00000116946 Gm22032 miRNA Interval_131684 chr5 139283740 139284017 + 0 NA intron (ENSMUSG00000056413.16, intron 3 of 9) protein_coding-intron (ENSMUSG00000056413.16, intron 4 of 10) 19272 ENSMUSG00000056413.16 ENSMUSG00000056413 ENSMUST00000156815 Adap1 protein_coding Interval_15912 chr10 59196165 59197399 + 0 NA TTS (ENSMUSG00000088744.1) snoRNA-TTS (ENSMUSG00000088744.1) 1083 ENSMUSG00000088744.1 ENSMUSG00000088744 ENSMUST00000158119 Gm23223 snoRNA Interval_146565 chr7 46860977 46861238 + 0 NA promoter-TSS (ENSMUSG00000030851.15) protein_coding-promoter-TSS (ENSMUSG00000030851.15) -179 ENSMUSG00000030851.15 ENSMUSG00000030851 ENSMUST00000126004 Ldhc protein_coding Interval_70350 chr17 8867000 8868502 + 0 NA intron (ENSMUSG00000023868.17, intron 1 of 21) protein_coding-intron (ENSMUSG00000023868.17, intron 1 of 21) -101824 ENSMUSG00000083386.1 ENSMUSG00000083386 ENSMUST00000117823 Gm15426 processed_pseudogene Interval_2032 chr1 36010389 36011322 + 0 NA promoter-TSS (ENSMUSG00000104201.1) lincRNA-promoter-TSS (ENSMUSG00000104201.1) 135 ENSMUSG00000103708.1 ENSMUSG00000103708 ENSMUST00000194823 Gm33222 lincRNA Interval_101810 chr3 9654100 9655389 + 0 NA Intergenic Intergenic -1776 ENSMUSG00000103876.1 ENSMUSG00000103876 ENSMUST00000195844 Gm17806 processed_pseudogene Interval_117505 chr4 124243938 124245217 + 0 NA Intergenic Intergenic 34600 ENSMUSG00000103541.1 ENSMUSG00000103541 ENSMUST00000193103 Gm37667 TEC Interval_92559 chr2 60672625 60673604 + 0 NA intron (ENSMUSG00000026971.15, intron 2 of 14) protein_coding-intron (ENSMUSG00000026971.15, intron 4 of 17) 612 ENSMUSG00000026971.15 ENSMUSG00000026971 ENSMUST00000142696 Itgb6 protein_coding Interval_90012 chr2 27326554 27327365 + 0 NA intron (ENSMUSG00000086669.1, intron 1 of 1) protein_coding-intron (ENSMUSG00000009621.18, intron 3 of 27) 255 ENSMUSG00000086669.1 ENSMUSG00000086669 ENSMUST00000156020 AA645442 antisense Interval_135217 chr6 37604216 37605468 + 0 NA Intergenic Intergenic 63428 ENSMUSG00000106889.1 ENSMUSG00000106889 ENSMUST00000201541 Gm7463 processed_pseudogene Interval_58920 chr15 40028057 40028257 + 0 NA Intergenic Intergenic -13379 ENSMUSG00000115739.1 ENSMUSG00000115739 ENSMUST00000228464 Gm49254 TEC Interval_78715 chr18 18717614 18718507 + 0 NA Intergenic Intergenic -415157 ENSMUSG00000117378.1 ENSMUSG00000117378 ENSMUST00000234128 Gm31086 lincRNA Interval_76035 chr17 74501697 74502592 + 0 NA Intergenic Intergenic 10300 ENSMUSG00000024072.9 ENSMUSG00000024072 ENSMUST00000234853 Yipf4 protein_coding Interval_114499 chr4 81266231 81266778 + 0 NA Intergenic Intergenic 71900 ENSMUSG00000077607.1 ENSMUSG00000077607 ENSMUST00000104419 Gm25803 snoRNA Interval_142646 chr6 144644644 144645340 + 0 NA intron (ENSMUSG00000041540.16, intron 1 of 6) protein_coding-intron (ENSMUSG00000041540.16, intron 1 of 13) 27728 ENSMUSG00000072677.4 ENSMUSG00000072677 ENSMUST00000144026 Sox5it sense_intronic Interval_118518 chr4 132221734 132222643 + 0 NA TTS (ENSMUSG00000028901.13) protein_coding-TTS (ENSMUSG00000028901.13) -1699 ENSMUSG00000083757.2 ENSMUSG00000083757 ENSMUST00000119415 Rps15a-ps4 transcribed_processed_pseudogene Interval_127394 chr5 103700816 103701877 + 0 NA intron (ENSMUSG00000029313.18, intron 1 of 6) protein_coding-intron (ENSMUSG00000029313.18, intron 1 of 6) 43109 ENSMUSG00000088121.1 ENSMUSG00000088121 ENSMUST00000157496 Gm25721 snRNA Interval_21316 chr10 127906885 127907869 + 0 NA intron (ENSMUSG00000040127.13, intron 2 of 2) protein_coding-intron (ENSMUSG00000040127.13, intron 3 of 3) 5331 ENSMUSG00000040127.13 ENSMUSG00000040127 ENSMUST00000149849 Sdr9c7 protein_coding Interval_111480 chr4 21990989 21991233 + 0 NA intron (ENSMUSG00000028246.13, intron 3 of 3) protein_coding-intron (ENSMUSG00000028246.13, intron 5 of 5) 17078 ENSMUSG00000080997.1 ENSMUSG00000080997 ENSMUST00000118473 Gm11885 processed_pseudogene Interval_99156 chr2 157558595 157561909 + 0 NA promoter-TSS (ENSMUSG00000067787.10) protein_coding-promoter-TSS (ENSMUSG00000067787.10) 136 ENSMUSG00000067786.16 ENSMUSG00000067786 ENSMUST00000134513 Nnat protein_coding Interval_116930 chr4 118281583 118282193 + 0 NA intron (ENSMUSG00000033295.14, intron 2 of 9) protein_coding-intron (ENSMUSG00000033295.14, intron 2 of 32) 9386 ENSMUSG00000033295.14 ENSMUSG00000033295 ENSMUST00000222620 Ptprf protein_coding Interval_75258 chr17 65512054 65512529 + 0 NA intron (ENSMUSG00000045036.15, intron 2 of 14) protein_coding-intron (ENSMUSG00000045036.15, intron 3 of 15) 1677 ENSMUSG00000117140.1 ENSMUSG00000117140 ENSMUST00000233254 Gm18138 processed_pseudogene Interval_65568 chr16 23402957 23403795 + 0 NA Intergenic Intergenic 20359 ENSMUSG00000084439.1 ENSMUSG00000084439 ENSMUST00000122490 Gm23430 misc_RNA Interval_100854 chr2 172903343 172903700 + 0 NA intron (ENSMUSG00000008999.7, intron 2 of 6) protein_coding-intron (ENSMUSG00000008999.7, intron 2 of 6) 36571 ENSMUSG00000008999.7 ENSMUSG00000008999 ENSMUST00000137247 Bmp7 protein_coding Interval_99980 chr2 166218710 166219579 + 0 NA Intergenic Intergenic -10517 ENSMUSG00000085046.1 ENSMUSG00000085046 ENSMUST00000129407 Gm11467 lincRNA Interval_170446 chr9 108035233 108035724 + 0 NA intron (ENSMUSG00000032594.11, intron 2 of 4) protein_coding-intron (ENSMUSG00000032594.11, intron 3 of 5) -13791 ENSMUSG00000070284.10 ENSMUSG00000070284 ENSMUST00000145330 Gmppb protein_coding Interval_73717 chr17 42964798 42965030 + 0 NA Intergenic Intergenic -51654 ENSMUSG00000023915.5 ENSMUSG00000023915 ENSMUST00000233482 Tnfrsf21 protein_coding Interval_157714 chr8 72474524 72475851 + 0 NA promoter-TSS (ENSMUSG00000052488.7) protein_coding-promoter-TSS (ENSMUSG00000052488.7) 39 ENSMUSG00000052488.7 ENSMUSG00000052488 ENSMUST00000212586 Cherp protein_coding Interval_170902 chr9 111817619 111817876 + 0 NA Intergenic Intergenic 100919 ENSMUSG00000111054.1 ENSMUSG00000111054 ENSMUST00000215688 4930545L08Rik lincRNA Interval_74505 chr17 52478265 52478587 + 0 NA Intergenic Intergenic -16661 ENSMUSG00000117035.1 ENSMUSG00000117035 ENSMUST00000233404 Gm5094 lincRNA Interval_73005 chr17 34093352 34094721 + 0 NA exon (ENSMUSG00000024334.9, exon 2 of 5) protein_coding-exon (ENSMUSG00000024334.9, exon 2 of 5) 1246 ENSMUSG00000098197.2 ENSMUSG00000098197 ENSMUST00000237731 BC051537 antisense Interval_132206 chr5 143339993 143340238 + 0 NA Intergenic Intergenic 5480 ENSMUSG00000104875.1 ENSMUSG00000104875 ENSMUST00000196422 Gm43397 lincRNA Interval_46039 chr13 60497350 60498268 + 0 NA Intergenic Intergenic -10510 ENSMUSG00000114452.1 ENSMUSG00000114452 ENSMUST00000225622 A530001N23Rik lincRNA Interval_29740 chr11 86500779 86501957 + 0 NA TTS (ENSMUSG00000020516.15) protein_coding-TTS (ENSMUSG00000020516.15) 16638 ENSMUSG00000020521.7 ENSMUSG00000020521 ENSMUST00000131246 Rnft1 protein_coding Interval_8496 chr1 140173419 140173920 + 0 NA intron (ENSMUSG00000026365.15, intron 1 of 12) protein_coding-intron (ENSMUSG00000026365.15, intron 1 of 21) 10095 ENSMUSG00000026365.15 ENSMUSG00000026365 ENSMUST00000194688 Cfh protein_coding Interval_145390 chr7 34400218 34400825 + 0 NA Intergenic Intergenic 10789 ENSMUSG00000108732.1 ENSMUSG00000108732 ENSMUST00000205403 2310043P16Rik TEC Interval_77605 chr17 92952695 92952888 + 0 NA Intergenic Intergenic -23730 ENSMUSG00000117409.1 ENSMUSG00000117409 ENSMUST00000234475 Gm49996 processed_pseudogene Interval_115825 chr4 105084597 105085039 + 0 NA intron (ENSMUSG00000028518.8, intron 1 of 8) protein_coding-intron (ENSMUSG00000028518.8, intron 1 of 8) 25072 ENSMUSG00000028518.8 ENSMUSG00000028518 ENSMUST00000030243 Prkaa2 protein_coding Interval_145380 chr7 34338594 34338985 + 0 NA Intergenic Intergenic 14706 ENSMUSG00000066568.12 ENSMUSG00000066568 ENSMUST00000206715 Lsm14a protein_coding Interval_58208 chr15 30760019 30760311 + 0 NA intron (ENSMUSG00000022240.10, intron 1 of 2) protein_coding-intron (ENSMUSG00000022240.10, intron 9 of 22) -133544 ENSMUSG00000115337.1 ENSMUSG00000115337 ENSMUST00000228499 4930570B17Rik antisense Interval_139220 chr6 97276479 97276698 + 0 NA Intergenic Intergenic 14673 ENSMUSG00000030064.16 ENSMUSG00000030064 ENSMUST00000124050 Frmd4b protein_coding Interval_15235 chr10 43560883 43561998 + 0 NA Intergenic Intergenic -16844 ENSMUSG00000047139.9 ENSMUSG00000047139 ENSMUST00000214476 Cd24a protein_coding Interval_161966 chr8 124117186 124117714 + 0 NA intron (ENSMUSG00000092329.1, intron 1 of 15) protein_coding-intron (ENSMUSG00000092329.1, intron 1 of 15) -42623 ENSMUSG00000110482.1 ENSMUSG00000110482 ENSMUST00000212467 Gm3889 processed_pseudogene Interval_170634 chr9 109789259 109789452 + 0 NA exon (ENSMUSG00000104614.5, exon 3 of 6) protein_coding-exon (ENSMUSG00000104614.5, exon 3 of 6) 1315 ENSMUSG00000104614.5 ENSMUSG00000104614 ENSMUST00000199197 Fbxw27 protein_coding Interval_77329 chr17 88029360 88029920 + 0 NA intron (ENSMUSG00000005371.15, intron 1 of 22) protein_coding-intron (ENSMUSG00000005371.15, intron 1 of 22) 35603 ENSMUSG00000005371.15 ENSMUSG00000005371 ENSMUST00000235056 Fbxo11 protein_coding Interval_48017 chr13 95280675 95281001 + 0 NA Intergenic Intergenic -45929 ENSMUSG00000041995.8 ENSMUSG00000041995 ENSMUST00000222456 Zbed3 protein_coding Interval_174163 chrX 136992639 136993675 + 0 NA promoter-TSS (ENSMUSG00000031428.11) protein_coding-promoter-TSS (ENSMUSG00000031428.11) 2 ENSMUSG00000031428.11 ENSMUSG00000031428 ENSMUST00000033804 Zcchc18 protein_coding Interval_57695 chr15 15819665 15820026 + 0 NA TTS (ENSMUSG00000088704.1) snoRNA-TTS (ENSMUSG00000088704.1) 618 ENSMUSG00000088704.1 ENSMUSG00000088704 ENSMUST00000158079 Gm25550 snoRNA Interval_136174 chr6 51720683 51721121 + 0 NA Intergenic Intergenic -9821 ENSMUSG00000108145.1 ENSMUSG00000108145 ENSMUST00000203781 Gm38811 lincRNA Interval_84707 chr19 15768941 15769414 + 0 NA Intergenic Intergenic -33881 ENSMUSG00000117995.1 ENSMUSG00000117995 ENSMUST00000237461 Gm50348 lincRNA Interval_29521 chr11 84644463 84644719 + 0 NA Intergenic Intergenic 75841 ENSMUSG00000085044.1 ENSMUSG00000085044 ENSMUST00000150735 1700109G15Rik lincRNA Interval_126175 chr5 81425663 81425989 + 0 NA intron (ENSMUSG00000037605.16, intron 6 of 12) protein_coding-intron (ENSMUSG00000037605.16, intron 3 of 24) -109900 ENSMUSG00000107375.1 ENSMUSG00000107375 ENSMUST00000200696 Gm43084 TEC Interval_6914 chr1 120613690 120614569 + 0 NA Intergenic Intergenic -7611 ENSMUSG00000099957.4 ENSMUSG00000099957 ENSMUST00000186982 2610027F03Rik lincRNA Interval_147613 chr7 69995775 69996029 + 0 NA Intergenic Intergenic -37998 ENSMUSG00000077166.1 ENSMUSG00000077166 ENSMUST00000103978 Gm24120 snoRNA Interval_159820 chr8 104077037 104077706 + 0 NA Intergenic Intergenic 6222 ENSMUSG00000110019.1 ENSMUSG00000110019 ENSMUST00000211125 Gm8748 processed_pseudogene Interval_60502 chr15 74486955 74488308 + 0 NA Intergenic Intergenic -47187 ENSMUSG00000118581.1 ENSMUSG00000118581 ENSMUST00000239328 AC119183.1 unitary_pseudogene Interval_144607 chr7 27060195 27060536 + 0 NA Intergenic Intergenic -7091 ENSMUSG00000108682.1 ENSMUSG00000108682 ENSMUST00000206269 Gm29754 processed_pseudogene Interval_14614 chr10 37007808 37008373 + 0 NA Intergenic Intergenic 16324 ENSMUSG00000019777.16 ENSMUSG00000019777 ENSMUST00000123010 Hdac2 protein_coding Interval_32277 chr11 106660041 106660524 + 0 NA TTS (ENSMUSG00000020717.19) protein_coding-TTS (ENSMUSG00000020717.19) 3044 ENSMUSG00000020717.19 ENSMUSG00000020717 ENSMUST00000124958 Pecam1 protein_coding Interval_25429 chr11 48178370 48179527 + 0 NA Intergenic Intergenic 111365 ENSMUSG00000081952.1 ENSMUSG00000081952 ENSMUST00000120545 Gm12178 processed_pseudogene Interval_126227 chr5 83340365 83340635 + 0 NA intron (ENSMUSG00000049537.10, intron 1 of 7) protein_coding-intron (ENSMUSG00000049537.10, intron 1 of 11) 14456 ENSMUSG00000049537.10 ENSMUSG00000049537 ENSMUST00000146669 Tecrl protein_coding Interval_131987 chr5 141866433 141866726 + 0 NA intron (ENSMUSG00000039683.16, intron 1 of 40) protein_coding-intron (ENSMUSG00000039683.16, intron 1 of 40) -250577 ENSMUSG00000085540.1 ENSMUSG00000085540 ENSMUST00000150385 Gm16036 antisense Interval_12168 chr1 190417052 190418178 + 0 NA TTS (ENSMUSG00000103644.1) lincRNA-TTS (ENSMUSG00000103644.1) 13970 ENSMUSG00000103644.1 ENSMUSG00000103644 ENSMUST00000193966 Gm29678 lincRNA Interval_108131 chr3 121770955 121771201 + 0 NA intron (ENSMUSG00000028127.10, intron 15 of 21) protein_coding-intron (ENSMUSG00000028127.10, intron 16 of 22) -6174 ENSMUSG00000106087.1 ENSMUSG00000106087 ENSMUST00000199084 Gm43609 TEC Interval_22959 chr11 17982946 17983989 + 0 NA Intergenic Intergenic -8677 ENSMUSG00000084413.1 ENSMUSG00000084413 ENSMUST00000122453 Gm12017 processed_pseudogene Interval_159382 chr8 94190927 94191811 + 0 NA Intergenic Intergenic 8080 ENSMUSG00000110524.1 ENSMUSG00000110524 ENSMUST00000212456 Gm39228 lincRNA Interval_78325 chr18 11983480 11983667 + 0 NA exon (ENSMUSG00000049411.15, exon 13 of 13) protein_coding-exon (ENSMUSG00000049411.15, exon 13 of 13) 70442 ENSMUSG00000117430.1 ENSMUSG00000117430 ENSMUST00000234828 Gm49968 TEC Interval_142081 chr6 136999255 137002778 + 0 NA Intergenic Intergenic 14420 ENSMUSG00000107734.1 ENSMUSG00000107734 ENSMUST00000203175 Gm30055 TEC Interval_90797 chr2 32661596 32662540 + 0 NA intron (ENSMUSG00000026814.16, intron 2 of 14) protein_coding-intron (ENSMUSG00000026814.16, intron 2 of 14) 9739 ENSMUSG00000093336.1 ENSMUSG00000093336 ENSMUST00000175595 Mir1954 miRNA Interval_72664 chr17 31422519 31423597 + 0 NA intron (ENSMUSG00000041119.12, intron 2 of 15) protein_coding-intron (ENSMUSG00000041119.12, intron 4 of 18) 11960 ENSMUSG00000118157.1 ENSMUSG00000118157 ENSMUST00000236083 Gm9902 antisense Interval_140313 chr6 116370004 116371891 + 0 NA TTS (ENSMUSG00000077758.1) snoRNA-TTS (ENSMUSG00000077758.1) 1121 ENSMUSG00000077758.1 ENSMUSG00000077758 ENSMUST00000104570 Gm23527 snoRNA Interval_33208 chr11 115228780 115230072 + 0 NA intron (ENSMUSG00000045980.13, intron 9 of 9) protein_coding-intron (ENSMUSG00000045980.13, intron 9 of 9) -23852 ENSMUSG00000089544.1 ENSMUSG00000089544 ENSMUST00000158919 Gm25837 miRNA Interval_57956 chr15 25736302 25736968 + 0 NA exon (ENSMUSG00000022272.17, exon 14 of 41) protein_coding-exon (ENSMUSG00000022272.17, exon 14 of 41) -31921 ENSMUSG00000022272.17 ENSMUSG00000022272 ENSMUST00000145587 Myo10 protein_coding Interval_162421 chr8 128519338 128519576 + 0 NA Intergenic Intergenic -114479 ENSMUSG00000110562.1 ENSMUSG00000110562 ENSMUST00000212641 Gm9204 processed_pseudogene Interval_143590 chr7 13005940 13007902 + 0 NA TTS (ENSMUSG00000049600.8) protein_coding-TTS (ENSMUSG00000049600.8) 2879 ENSMUSG00000049600.8 ENSMUSG00000049600 ENSMUST00000210108 Zbtb45 protein_coding Interval_42377 chr13 12467053 12467349 + 0 NA Intergenic Intergenic -10678 ENSMUSG00000057554.13 ENSMUSG00000057554 ENSMUST00000152478 Lgals8 protein_coding Interval_34120 chr11 120748765 120751090 + 0 NA Intergenic Intergenic -13716 ENSMUSG00000078249.5 ENSMUSG00000078249 ENSMUST00000178955 Hmga1b protein_coding Interval_80446 chr18 42290450 42291028 + 0 NA intron (ENSMUSG00000024491.16, intron 2 of 20) protein_coding-intron (ENSMUSG00000024491.16, intron 2 of 19) -8382 ENSMUSG00000024491.16 ENSMUSG00000024491 ENSMUST00000237798 Rbm27 protein_coding Interval_145548 chr7 35536757 35538416 + 0 NA promoter-TSS (ENSMUSG00000030491.16) protein_coding-promoter-TSS (ENSMUSG00000030491.16) 17608 ENSMUSG00000034875.5 ENSMUSG00000034875 ENSMUST00000123469 Nudt19 protein_coding Interval_117474 chr4 123990455 123991182 + 0 NA Intergenic Intergenic 64584 ENSMUSG00000082515.1 ENSMUSG00000082515 ENSMUST00000118389 Gm12902 processed_pseudogene Interval_7499 chr1 131852688 131854225 + 0 NA Intergenic Intergenic 10616 ENSMUSG00000013275.9 ENSMUSG00000013275 ENSMUST00000146360 Slc41a1 protein_coding Interval_133295 chr5 151298610 151298892 + 0 NA intron (ENSMUSG00000107011.1, intron 1 of 5) protein_coding-intron (ENSMUSG00000107011.1, intron 1 of 5) 17628 ENSMUSG00000107154.1 ENSMUSG00000107154 ENSMUST00000201227 Gm7041 processed_pseudogene Interval_106854 chr3 101312748 101313356 + 0 NA Intergenic Intergenic 2206 ENSMUSG00000106316.1 ENSMUSG00000106316 ENSMUST00000197441 Gm43467 processed_pseudogene Interval_62314 chr15 89886700 89887566 + 0 NA Intergenic Intergenic 1919 ENSMUSG00000096784.1 ENSMUSG00000096784 ENSMUST00000178305 Gm24643 miRNA Interval_156024 chr8 42664540 42665257 + 0 NA Intergenic Intergenic -77909 ENSMUSG00000088312.1 ENSMUSG00000088312 ENSMUST00000157687 Gm26181 snRNA Interval_25098 chr11 43892092 43892756 + 0 NA intron (ENSMUSG00000050541.14, intron 1 of 4) protein_coding-intron (ENSMUSG00000050541.14, intron 1 of 4) -56092 ENSMUSG00000050541.14 ENSMUSG00000050541 ENSMUST00000139906 Adra1b protein_coding Interval_17862 chr10 80463753 80465334 + 0 NA Intergenic Intergenic -11809 ENSMUSG00000089228.1 ENSMUSG00000089228 ENSMUST00000158603 Gm25044 snRNA Interval_32100 chr11 105239280 105239572 + 0 NA intron (ENSMUSG00000020694.17, intron 6 of 17) protein_coding-intron (ENSMUSG00000020694.17, intron 6 of 20) 30573 ENSMUSG00000020694.17 ENSMUSG00000020694 ENSMUST00000146910 Tlk2 protein_coding Interval_167099 chr9 65230030 65230664 + 0 NA intron (ENSMUSG00000032392.11, intron 4 of 6) protein_coding-intron (ENSMUSG00000032392.11, intron 4 of 6) -28506 ENSMUSG00000095892.1 ENSMUSG00000095892 ENSMUST00000093721 Rnu5g snRNA Interval_83782 chr19 4675704 4675960 + 0 NA intron (ENSMUSG00000071691.11, intron 3 of 15) protein_coding-intron (ENSMUSG00000071691.11, intron 3 of 9) -4283 ENSMUSG00000117746.1 ENSMUSG00000117746 ENSMUST00000236726 Gm50372 processed_pseudogene Interval_45661 chr13 56647676 56648828 + 0 NA Intergenic Intergenic 17039 ENSMUSG00000035493.10 ENSMUSG00000035493 ENSMUST00000226024 Tgfbi protein_coding Interval_13859 chr10 23999628 24000269 + 0 NA promoter-TSS (ENSMUSG00000095171.1) protein_coding-promoter-TSS (ENSMUSG00000095171.1) 9 ENSMUSG00000095171.1 ENSMUSG00000095171 ENSMUST00000092658 Taar7b protein_coding Interval_49576 chr13 113135431 113136188 + 0 NA promoter-TSS (ENSMUSG00000114333.1) lincRNA-promoter-TSS (ENSMUSG00000114333.1) -274 ENSMUSG00000114333.1 ENSMUSG00000114333 ENSMUST00000226043 1700084D21Rik lincRNA Interval_126971 chr5 98706406 98706789 + 0 NA intron (ENSMUSG00000057816.7, intron 4 of 6) protein_coding-intron (ENSMUSG00000057816.7, intron 3 of 5) -139671 ENSMUSG00000067101.5 ENSMUSG00000067101 ENSMUST00000086912 1700010H22Rik lincRNA Interval_118978 chr4 134817709 134818209 + 0 NA intron (ENSMUSG00000028826.14, intron 7 of 8) protein_coding-intron (ENSMUSG00000028826.14, intron 6 of 10) -6746 ENSMUSG00000028826.14 ENSMUSG00000028826 ENSMUST00000136113 Maco1 protein_coding Interval_168333 chr9 78809588 78809782 + 0 NA Intergenic Intergenic 12153 ENSMUSG00000059422.5 ENSMUSG00000059422 ENSMUST00000182917 Gm8116 processed_pseudogene Interval_58687 chr15 37045424 37047340 + 0 NA Intergenic Intergenic 38799 ENSMUSG00000097259.2 ENSMUSG00000097259 ENSMUST00000227544 Gm26766 antisense Interval_29125 chr11 80476329 80477856 + 0 NA promoter-TSS (ENSMUSG00000048895.13) protein_coding-promoter-TSS (ENSMUSG00000048895.13) 36 ENSMUSG00000048895.13 ENSMUSG00000048895 ENSMUST00000147694 Cdk5r1 protein_coding Interval_7701 chr1 133146081 133147366 + 0 NA Intergenic Intergenic -14941 ENSMUSG00000102425.1 ENSMUSG00000102425 ENSMUST00000193049 Gm26616 TEC Interval_50530 chr14 14708494 14709629 + 0 NA intron (ENSMUSG00000021733.11, intron 1 of 23) protein_coding-intron (ENSMUSG00000021733.11, intron 1 of 24) 5982 ENSMUSG00000021733.11 ENSMUSG00000021733 ENSMUST00000225613 Slc4a7 protein_coding Interval_109400 chr3 141819103 141820021 + 0 NA intron (ENSMUSG00000059921.15, intron 15 of 17) protein_coding-intron (ENSMUSG00000059921.15, intron 15 of 16) 111946 ENSMUSG00000052430.15 ENSMUSG00000052430 ENSMUST00000106230 Bmpr1b protein_coding Interval_126627 chr5 91138958 91140033 + 0 NA promoter-TSS (ENSMUSG00000029378.5) protein_coding-promoter-TSS (ENSMUSG00000029378.5) -104 ENSMUSG00000029378.5 ENSMUSG00000029378 ENSMUST00000031325 Areg protein_coding Interval_30704 chr11 96004786 96007933 + 0 NA promoter-TSS (ENSMUSG00000013415.9) protein_coding-promoter-TSS (ENSMUSG00000013415.9) 470 ENSMUSG00000099928.1 ENSMUSG00000099928 ENSMUST00000191263 Gm29202 antisense Interval_6229 chr1 103094083 103094487 + 0 NA Intergenic Intergenic -77641 ENSMUSG00000100955.1 ENSMUSG00000100955 ENSMUST00000186155 Gm18728 unprocessed_pseudogene Interval_47364 chr13 81945688 81946342 + 0 NA Intergenic Intergenic -16328 ENSMUSG00000114634.1 ENSMUSG00000114634 ENSMUST00000224647 F830210D05Rik TEC Interval_38013 chr12 73952988 73953610 + 0 NA intron (ENSMUSG00000114046.1, intron 1 of 2) protein_coding-intron (ENSMUSG00000114046.1, intron 1 of 2) -7843 ENSMUSG00000066457.6 ENSMUSG00000066457 ENSMUST00000181735 S100a11-ps processed_pseudogene Interval_60104 chr15 65702666 65702922 + 0 NA Intergenic Intergenic 8245 ENSMUSG00000077783.1 ENSMUSG00000077783 ENSMUST00000104595 Gm23907 snRNA Interval_71594 chr17 24746855 24747597 + 0 NA Intergenic Intergenic -5790 ENSMUSG00000039628.9 ENSMUSG00000039628 ENSMUST00000234202 Hs3st6 protein_coding Interval_17711 chr10 79695007 79695631 + 0 NA TTS (ENSMUSG00000054206.2) protein_coding-TTS (ENSMUSG00000054206.2) 1561 ENSMUSG00000054206.2 ENSMUSG00000054206 ENSMUST00000151213 Gzmm protein_coding Interval_159024 chr8 88883803 88884133 + 0 NA Intergenic Intergenic -20894 ENSMUSG00000109778.1 ENSMUSG00000109778 ENSMUST00000211407 Gm45504 TEC Interval_86645 chr19 42262995 42263786 + 0 NA exon (ENSMUSG00000042532.14, exon 2 of 5) protein_coding-exon (ENSMUSG00000042532.14, exon 2 of 5) -11574 ENSMUSG00000076323.1 ENSMUSG00000076323 ENSMUST00000102368 Gm26339 miRNA Interval_151705 chr7 126173169 126173794 + 0 NA intron (ENSMUSG00000000131.15, intron 1 of 2) protein_coding-intron (ENSMUSG00000000131.15, intron 2 of 23) -2643 ENSMUSG00000057945.3 ENSMUSG00000057945 ENSMUST00000169993 Gm17136 processed_pseudogene Interval_149094 chr7 93147244 93147726 + 0 NA TTS (ENSMUSG00000088877.1) snoRNA-TTS (ENSMUSG00000088877.1) 486 ENSMUSG00000088877.1 ENSMUSG00000088877 ENSMUST00000158252 Gm25860 snoRNA Interval_153222 chr7 142565360 142565673 + 0 NA Intergenic Intergenic -6920 ENSMUSG00000087090.7 ENSMUSG00000087090 ENSMUST00000123668 Nctc1 processed_transcript Interval_118181 chr4 129393952 129394922 + 0 NA Intergenic Intergenic 14593 ENSMUSG00000082468.1 ENSMUSG00000082468 ENSMUST00000118912 Gm12980 processed_pseudogene Interval_142858 chr6 146499994 146500239 + 0 NA intron (ENSMUSG00000030287.15, intron 1 of 13) protein_coding-intron (ENSMUSG00000030287.15, intron 1 of 56) -36509 ENSMUSG00000082120.1 ENSMUSG00000082120 ENSMUST00000117133 Gm15720 processed_pseudogene Interval_138325 chr6 87215665 87216148 + 0 NA intron (ENSMUSG00000033420.12, intron 6 of 6) protein_coding-intron (ENSMUSG00000033420.12, intron 13 of 17) 39702 ENSMUSG00000107865.1 ENSMUSG00000107865 ENSMUST00000203298 Gm44417 TEC Interval_26293 chr11 55863664 55864045 + 0 NA intron (ENSMUSG00000086020.1, intron 1 of 4) antisense-intron (ENSMUSG00000086020.1, intron 1 of 4) 91766 ENSMUSG00000086020.1 ENSMUSG00000086020 ENSMUST00000134285 Gm12239 antisense Interval_153855 chr8 9975985 9976667 + 0 NA promoter-TSS (ENSMUSG00000049717.9) protein_coding-promoter-TSS (ENSMUSG00000049717.9) 1360 ENSMUSG00000049717.9 ENSMUSG00000049717 ENSMUST00000170033 Lig4 protein_coding Interval_164549 chr9 38474486 38474993 + 0 NA exon (ENSMUSG00000096794.2, exon 2 of 2) protein_coding-exon (ENSMUSG00000096794.2, exon 2 of 2) 3632 ENSMUSG00000096794.2 ENSMUSG00000096794 ENSMUST00000051111 Olfr905 protein_coding Interval_30580 chr11 95231190 95232570 + 0 NA Intergenic Intergenic -6248 ENSMUSG00000085992.1 ENSMUSG00000085992 ENSMUST00000150818 Gm11515 lincRNA Interval_141901 chr6 135225202 135225798 + 0 NA intron (ENSMUSG00000030207.15, intron 6 of 13) protein_coding-intron (ENSMUSG00000030207.15, intron 6 of 12) -6101 ENSMUSG00000030207.15 ENSMUSG00000030207 ENSMUST00000151951 Fam234b protein_coding Interval_139928 chr6 112828956 112830094 + 0 NA promoter-TSS (ENSMUSG00000030257.16) protein_coding-promoter-TSS (ENSMUSG00000030257.16) -66 ENSMUSG00000030257.16 ENSMUSG00000030257 ENSMUST00000143475 Srgap3 protein_coding Interval_54264 chr14 66976826 66977605 + 0 NA Intergenic Intergenic 6763 ENSMUSG00000065673.1 ENSMUSG00000065673 ENSMUST00000083739 Gm24258 snoRNA Interval_33461 chr11 116668692 116669058 + 0 NA TTS (ENSMUSG00000075410.13) protein_coding-TTS (ENSMUSG00000075410.13) -2729 ENSMUSG00000020812.18 ENSMUSG00000020812 ENSMUST00000239362 Snhg16 antisense Interval_2325 chr1 38071580 38072036 + 0 NA intron (ENSMUSG00000026082.11, intron 4 of 5) protein_coding-intron (ENSMUSG00000026082.11, intron 10 of 22) 5497 ENSMUSG00000103804.1 ENSMUSG00000103804 ENSMUST00000195028 Gm37062 sense_intronic Interval_74147 chr17 46799369 46800519 + 0 NA TTS (ENSMUSG00000036568.7) protein_coding-TTS (ENSMUSG00000036568.7) -17307 ENSMUSG00000063888.7 ENSMUSG00000063888 ENSMUST00000233919 Rpl7l1 protein_coding Interval_138748 chr6 91616858 91617991 + 0 NA Intergenic Intergenic 18192 ENSMUSG00000108308.1 ENSMUSG00000108308 ENSMUST00000205533 Gm45218 lincRNA Interval_34157 chr11 120956416 120956932 + 0 NA TTS (ENSMUSG00000025161.16) protein_coding-TTS (ENSMUSG00000025161.16) -7170 ENSMUSG00000100629.1 ENSMUSG00000100629 ENSMUST00000189381 Gm28192 antisense Interval_108871 chr3 132876032 132876568 + 0 NA intron (ENSMUSG00000106230.1, intron 1 of 3) lincRNA-intron (ENSMUSG00000106230.1, intron 1 of 3) 2296 ENSMUSG00000106230.1 ENSMUSG00000106230 ENSMUST00000197386 Gm29811 lincRNA Interval_40131 chr12 101837110 101837670 + 0 NA TTS (ENSMUSG00000021188.14) protein_coding-TTS (ENSMUSG00000021188.14) -18922 ENSMUSG00000021186.9 ENSMUSG00000021186 ENSMUST00000221373 Fbln5 protein_coding Interval_13216 chr10 13127296 13128997 + 0 NA TTS (ENSMUSG00000019817.18) protein_coding-TTS (ENSMUSG00000019817.18) -36329 ENSMUSG00000098635.1 ENSMUSG00000098635 ENSMUST00000185060 Gm27741 misc_RNA Interval_118879 chr4 134232250 134232492 + 0 NA TTS (ENSMUSG00000028841.14) protein_coding-TTS (ENSMUSG00000028841.14) -1936 ENSMUSG00000028841.14 ENSMUSG00000028841 ENSMUST00000124181 Cnksr1 protein_coding Interval_2801 chr1 45572916 45573152 + 0 NA Intergenic Intergenic -28992 ENSMUSG00000100894.1 ENSMUSG00000100894 ENSMUST00000185744 Gm8304 processed_pseudogene Interval_36322 chr12 41183877 41184819 + 0 NA intron (ENSMUSG00000056899.10, intron 3 of 5) protein_coding-intron (ENSMUSG00000056899.10, intron 4 of 6) -139409 ENSMUSG00000113994.1 ENSMUSG00000113994 ENSMUST00000220956 Gm47375 antisense Interval_152968 chr7 140115555 140116867 + 0 NA exon (ENSMUSG00000025465.13, exon 1 of 1) protein_coding-exon (ENSMUSG00000025465.13, exon 1 of 1) 211 ENSMUSG00000025465.13 ENSMUSG00000025465 ENSMUST00000211120 Echs1 protein_coding Interval_101047 chr2 174564737 174565925 + 0 NA Intergenic Intergenic -25899 ENSMUSG00000082353.1 ENSMUSG00000082353 ENSMUST00000118738 Vmn1r-ps1 processed_pseudogene Interval_6078 chr1 96171194 96171495 + 0 NA Intergenic Intergenic 95597 ENSMUSG00000080345.3 ENSMUSG00000080345 ENSMUST00000116695 Gm24586 miRNA Interval_125435 chr5 67100186 67100631 + 0 NA Intergenic Intergenic -1351 ENSMUSG00000012520.10 ENSMUSG00000012520 ENSMUST00000174251 Phox2b protein_coding Interval_82394 chr18 73665433 73666245 + 0 NA intron (ENSMUSG00000024515.13, intron 3 of 10) protein_coding-intron (ENSMUSG00000024515.13, intron 4 of 11) -1365 ENSMUSG00000118185.1 ENSMUSG00000118185 ENSMUST00000235991 Gm50126 processed_pseudogene Interval_60433 chr15 73718014 73718510 + 0 NA Intergenic Intergenic -10757 ENSMUSG00000045281.5 ENSMUSG00000045281 ENSMUST00000064166 Gpr20 protein_coding Interval_83798 chr19 4765187 4765530 + 0 NA promoter-TSS (ENSMUSG00000103651.1) TEC-promoter-TSS (ENSMUSG00000103651.1) -187 ENSMUSG00000103651.1 ENSMUSG00000103651 ENSMUST00000195512 Gm37206 TEC Interval_165793 chr9 53173380 53173894 + 0 NA intron (ENSMUSG00000053289.8, intron 13 of 17) protein_coding-intron (ENSMUSG00000053289.8, intron 13 of 17) 9449 ENSMUSG00000111693.1 ENSMUSG00000111693 ENSMUST00000213563 Gm47986 processed_pseudogene Interval_8250 chr1 136733043 136733588 + 0 NA Intergenic Intergenic 24294 ENSMUSG00000096432.1 ENSMUSG00000096432 ENSMUST00000175316 Gm22132 miRNA Interval_146267 chr7 45061692 45062971 + 0 NA promoter-TSS (ENSMUSG00000003421.13) protein_coding-promoter-TSS (ENSMUSG00000003421.13) -142 ENSMUSG00000003421.13 ENSMUSG00000003421 ENSMUST00000210668 Nosip protein_coding Interval_159225 chr8 91921947 91923044 + 0 NA Intergenic Intergenic -9429 ENSMUSG00000099812.1 ENSMUSG00000099812 ENSMUST00000189823 Gm28515 lincRNA Interval_168267 chr9 78340122 78340946 + 0 NA intron (ENSMUSG00000057933.10, intron 3 of 6) protein_coding-intron (ENSMUSG00000057933.10, intron 2 of 6) -1782 ENSMUSG00000057933.10 ENSMUSG00000057933 ENSMUST00000140498 Gsta2 protein_coding Interval_19701 chr10 108191283 108191581 + 0 NA intron (ENSMUSG00000019907.10, intron 1 of 24) protein_coding-intron (ENSMUSG00000019907.10, intron 1 of 25) -49000 ENSMUSG00000112401.1 ENSMUSG00000112401 ENSMUST00000219675 Gm47999 processed_pseudogene Interval_169482 chr9 98185942 98186668 + 0 NA TTS (ENSMUSG00000046995.3) lincRNA-TTS (ENSMUSG00000046995.3) 848 ENSMUSG00000046995.3 ENSMUSG00000046995 ENSMUST00000061643 2610303G11Rik lincRNA Interval_114589 chr4 82813158 82813959 + 0 NA intron (ENSMUSG00000028403.15, intron 6 of 7) protein_coding-intron (ENSMUSG00000028403.15, intron 7 of 8) 46003 ENSMUSG00000028403.15 ENSMUSG00000028403 ENSMUST00000156055 Zdhhc21 protein_coding Interval_79521 chr18 32739290 32739544 + 0 NA Intergenic Intergenic -77443 ENSMUSG00000024379.4 ENSMUSG00000024379 ENSMUST00000234876 Tslp protein_coding Interval_66674 chr16 36040590 36041653 + 0 NA promoter-TSS (ENSMUSG00000034379.9) protein_coding-promoter-TSS (ENSMUSG00000034379.9) -69 ENSMUSG00000034379.9 ENSMUSG00000034379 ENSMUST00000042203 Wdr5b protein_coding Interval_71083 chr17 17795575 17795870 + 0 NA Intergenic Intergenic 12590 ENSMUSG00000084605.1 ENSMUSG00000084605 ENSMUST00000122656 Gm23837 misc_RNA Interval_11327 chr1 180974218 180974869 + 0 NA exon (ENSMUSG00000026519.16, exon 23 of 23) protein_coding-exon (ENSMUSG00000026519.16, exon 23 of 23) 1746 ENSMUSG00000103930.1 ENSMUSG00000103930 ENSMUST00000191980 Gm36961 unprocessed_pseudogene Interval_51726 chr14 31668107 31668539 + 0 NA exon (ENSMUSG00000021900.10, exon 4 of 4) protein_coding-exon (ENSMUSG00000021900.10, exon 4 of 4) 27295 ENSMUSG00000021900.10 ENSMUSG00000021900 ENSMUST00000090147 Btd protein_coding Interval_172674 chrX 42014714 42014937 + 0 NA Intergenic Intergenic -45096 ENSMUSG00000025860.15 ENSMUSG00000025860 ENSMUST00000026978 Xiap protein_coding Interval_67293 chr16 45629342 45630944 + 0 NA intron (ENSMUSG00000033187.8, intron 4 of 5) protein_coding-intron (ENSMUSG00000033187.8, intron 4 of 5) -12214 ENSMUSG00000116593.1 ENSMUSG00000116593 ENSMUST00000231331 Gm49585 processed_pseudogene Interval_30847 chr11 96849595 96851297 + 0 NA promoter-TSS (ENSMUSG00000065515.1) miRNA-promoter-TSS (ENSMUSG00000065515.1) 53 ENSMUSG00000065515.1 ENSMUSG00000065515 ENSMUST00000083581 Mir152 miRNA Interval_53151 chr14 54729174 54729873 + 0 NA intron (ENSMUSG00000022180.7, intron 7 of 10) protein_coding-intron (ENSMUSG00000022180.7, intron 7 of 10) -17349 ENSMUSG00000052435.7 ENSMUSG00000052435 ENSMUST00000064290 Cebpe protein_coding Interval_116878 chr4 117926429 117927392 + 0 NA exon (ENSMUSG00000028539.14, exon 5 of 5) protein_coding-exon (ENSMUSG00000028539.14, exon 5 of 5) 2503 ENSMUSG00000028539.14 ENSMUSG00000028539 ENSMUST00000150612 Artn protein_coding Interval_162726 chr9 8074521 8074999 + 0 NA Intergenic Intergenic -31947 ENSMUSG00000053070.5 ENSMUSG00000053070 ENSMUST00000215478 Cfap300 protein_coding Interval_147011 chr7 58145618 58147145 + 0 NA Intergenic Intergenic 1846 ENSMUSG00000077356.1 ENSMUSG00000077356 ENSMUST00000104168 Gm26288 snoRNA Interval_44131 chr13 41097719 41098796 + 0 NA Intergenic Intergenic 6827 ENSMUSG00000114385.1 ENSMUSG00000114385 ENSMUST00000225870 Gm48344 processed_pseudogene Interval_120995 chr4 152119281 152121197 + 0 NA TTS (ENSMUSG00000024793.14) protein_coding-TTS (ENSMUSG00000024793.14) 2268 ENSMUSG00000024793.14 ENSMUSG00000024793 ENSMUST00000153619 Tnfrsf25 protein_coding Interval_58109 chr15 27967584 27968577 + 0 NA intron (ENSMUSG00000022263.10, intron 1 of 56) protein_coding-intron (ENSMUSG00000022263.10, intron 1 of 56) 27283 ENSMUSG00000022263.10 ENSMUSG00000022263 ENSMUST00000228950 Trio protein_coding Interval_69573 chr16 94353922 94354654 + 0 NA Intergenic Intergenic 5024 ENSMUSG00000089814.1 ENSMUSG00000089814 ENSMUST00000117891 Gm15310 transcribed_processed_pseudogene Interval_41239 chr12 112069328 112069597 + 0 NA TTS (ENSMUSG00000054003.13) protein_coding-TTS (ENSMUSG00000054003.13) -37217 ENSMUSG00000037686.6 ENSMUSG00000037686 ENSMUST00000222970 Aspg protein_coding Interval_10849 chr1 175945614 175945882 + 0 NA Intergenic Intergenic 11650 ENSMUSG00000103540.1 ENSMUSG00000103540 ENSMUST00000193745 Gm37668 TEC Interval_161390 chr8 120185512 120185783 + 0 NA intron (ENSMUSG00000092329.1, intron 1 of 15) protein_coding-intron (ENSMUSG00000092329.1, intron 1 of 15) -8284 ENSMUSG00000042269.15 ENSMUSG00000042269 ENSMUST00000142478 Fam92b protein_coding Interval_93858 chr2 77551849 77552140 + 0 NA intron (ENSMUSG00000027016.17, intron 3 of 3) protein_coding-intron (ENSMUSG00000027016.17, intron 1 of 7) 89325 ENSMUSG00000085845.7 ENSMUSG00000085845 ENSMUST00000126572 Gm13944 antisense Interval_173463 chrX 94185050 94185541 + 0 NA Intergenic Intergenic 27567 ENSMUSG00000035150.15 ENSMUSG00000035150 ENSMUST00000127963 Eif2s3x protein_coding Interval_125280 chr5 65911584 65913521 + 0 NA exon (ENSMUSG00000107254.1, exon 1 of 1) TEC-exon (ENSMUSG00000107254.1, exon 1 of 1) 928 ENSMUSG00000107254.1 ENSMUSG00000107254 ENSMUST00000201871 Gm43769 TEC Interval_109611 chr3 145147375 145147710 + 0 NA exon (ENSMUSG00000028256.16, exon 3 of 6) protein_coding-exon (ENSMUSG00000028256.16, exon 3 of 6) -1476 ENSMUSG00000028256.16 ENSMUSG00000028256 ENSMUST00000200353 Odf2l protein_coding Interval_9221 chr1 155203908 155204510 + 0 NA exon (ENSMUSG00000026470.14, exon 8 of 8) protein_coding-exon (ENSMUSG00000026470.14, exon 8 of 8) 16827 ENSMUSG00000026470.14 ENSMUSG00000026470 ENSMUST00000194158 Stx6 protein_coding Interval_16597 chr10 64748473 64748765 + 0 NA intron (ENSMUSG00000060843.11, intron 13 of 17) protein_coding-intron (ENSMUSG00000060843.11, intron 12 of 16) 371748 ENSMUSG00000100528.1 ENSMUSG00000100528 ENSMUST00000187710 Gm28881 lincRNA Interval_12204 chr1 190821942 190822190 + 0 NA intron (ENSMUSG00000089872.10, intron 1 of 3) protein_coding-intron (ENSMUSG00000089872.10, intron 8 of 14) 77651 ENSMUSG00000089872.10 ENSMUSG00000089872 ENSMUST00000159066 Rps6kc1 protein_coding Interval_98856 chr2 155610997 155611425 + 0 NA promoter-TSS (ENSMUSG00000074652.3) protein_coding-promoter-TSS (ENSMUSG00000074652.3) -11669 ENSMUSG00000076312.1 ENSMUSG00000076312 ENSMUST00000102357 Mir499 miRNA Interval_29382 chr11 83545899 83546104 + 0 NA Intergenic Intergenic -15488 ENSMUSG00000035042.2 ENSMUSG00000035042 ENSMUST00000125015 Ccl5 protein_coding Interval_105676 chr3 88521831 88522499 + 0 NA Intergenic Intergenic 5190 ENSMUSG00000103115.1 ENSMUSG00000103115 ENSMUST00000193595 Gm37584 lincRNA Interval_7413 chr1 131129194 131130231 + 0 NA TTS (ENSMUSG00000016526.8) protein_coding-TTS (ENSMUSG00000016526.8) 8533 ENSMUSG00000016526.8 ENSMUSG00000016526 ENSMUST00000189756 Dyrk3 protein_coding Interval_165482 chr9 48597037 48598684 + 0 NA promoter-TSS (ENSMUSG00000032271.13) protein_coding-promoter-TSS (ENSMUSG00000032271.13) -485 ENSMUSG00000032271.13 ENSMUSG00000032271 ENSMUST00000128076 Nnmt protein_coding Interval_162620 chr9 6834474 6835679 + 0 NA Intergenic Intergenic 33233 ENSMUSG00000111464.1 ENSMUSG00000111464 ENSMUST00000213261 Gm48675 processed_pseudogene Interval_93861 chr2 77586241 77587748 + 0 NA intron (ENSMUSG00000027016.17, intron 3 of 3) protein_coding-intron (ENSMUSG00000027016.17, intron 1 of 7) 116278 ENSMUSG00000027016.17 ENSMUSG00000027016 ENSMUST00000129077 Zfp385b protein_coding Interval_131919 chr5 140783746 140784014 + 0 NA intron (ENSMUSG00000000149.10, intron 2 of 3) protein_coding-intron (ENSMUSG00000000149.10, intron 2 of 3) 46277 ENSMUSG00000000149.10 ENSMUSG00000000149 ENSMUST00000198447 Gna12 protein_coding Interval_38600 chr12 80385393 80385626 + 0 NA intron (ENSMUSG00000049106.7, intron 5 of 8) protein_coding-intron (ENSMUSG00000049106.7, intron 5 of 8) 6168 ENSMUSG00000105972.1 ENSMUSG00000105972 ENSMUST00000200234 Mir1843a miRNA Interval_44246 chr13 42883864 42884310 + 0 NA intron (ENSMUSG00000054728.17, intron 1 of 1) protein_coding-intron (ENSMUSG00000054728.17, intron 1 of 11) -14485 ENSMUSG00000085276.3 ENSMUSG00000085276 ENSMUST00000162331 Gm15812 processed_pseudogene Interval_45729 chr13 57324574 57326028 + 0 NA Intergenic Intergenic 48623 ENSMUSG00000114411.1 ENSMUSG00000114411 ENSMUST00000224461 Gm48176 processed_pseudogene Interval_155999 chr8 41771432 41772014 + 0 NA Intergenic Intergenic -55544 ENSMUSG00000102046.1 ENSMUSG00000102046 ENSMUST00000188324 2810404M03Rik lincRNA Interval_144870 chr7 28701262 28701675 + 0 NA Intergenic Intergenic 8429 ENSMUSG00000037463.14 ENSMUSG00000037463 ENSMUST00000127368 Fbxo27 protein_coding Interval_157536 chr8 71265941 71267347 + 0 NA intron (ENSMUSG00000035439.13, intron 1 of 4) protein_coding-intron (ENSMUSG00000035439.13, intron 2 of 10) 5816 ENSMUSG00000035439.13 ENSMUSG00000035439 ENSMUST00000128833 Haus8 protein_coding Interval_64599 chr16 13595416 13595624 + 0 NA intron (ENSMUSG00000022685.9, intron 22 of 23) protein_coding-intron (ENSMUSG00000022685.9, intron 21 of 23) -63969 ENSMUSG00000077488.1 ENSMUSG00000077488 ENSMUST00000104300 Gm25276 snoRNA Interval_26087 chr11 54067910 54069496 + 0 NA intron (ENSMUSG00000020388.12, intron 1 of 2) protein_coding-intron (ENSMUSG00000020388.12, intron 1 of 6) -4135 ENSMUSG00000020388.12 ENSMUSG00000020388 ENSMUST00000151948 Pdlim4 protein_coding Interval_10918 chr1 176992701 176994432 + 0 NA intron (ENSMUSG00000026504.17, intron 17 of 18) protein_coding-intron (ENSMUSG00000026504.17, intron 16 of 17) 19330 ENSMUSG00000103251.1 ENSMUSG00000103251 ENSMUST00000191687 Gm37519 TEC Interval_146802 chr7 51878460 51879938 + 0 NA exon (ENSMUSG00000030498.15, exon 1 of 8) protein_coding-exon (ENSMUSG00000030498.15, exon 1 of 8) -8719 ENSMUSG00000030498.15 ENSMUSG00000030498 ENSMUST00000145723 Gas2 protein_coding Interval_116749 chr4 117084658 117085168 + 0 NA intron (ENSMUSG00000028683.14, intron 3 of 3) protein_coding-intron (ENSMUSG00000028683.14, intron 9 of 9) 17450 ENSMUSG00000028683.14 ENSMUSG00000028683 ENSMUST00000129587 Eif2b3 protein_coding Interval_144213 chr7 19991005 19991749 + 0 NA promoter-TSS (ENSMUSG00000060508.16) protein_coding-promoter-TSS (ENSMUSG00000060508.16) -88 ENSMUSG00000060508.16 ENSMUSG00000060508 ENSMUST00000117909 Nlrp9b protein_coding Interval_21654 chr11 3494930 3495473 + 0 NA exon (ENSMUSG00000034570.12, exon 12 of 12) protein_coding-exon (ENSMUSG00000034570.12, exon 12 of 12) 6211 ENSMUSG00000034579.17 ENSMUSG00000034579 ENSMUST00000151860 Pla2g3 protein_coding Interval_10178 chr1 166431339 166432078 + 0 NA TTS (ENSMUSG00000084093.1) processed_pseudogene-TTS (ENSMUSG00000084093.1) 167 ENSMUSG00000084093.1 ENSMUSG00000084093 ENSMUST00000118577 Gm16418 processed_pseudogene Interval_15417 chr10 45838196 45839595 + 0 NA intron (ENSMUSG00000110874.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000110874.1, intron 2 of 2) 1015 ENSMUSG00000110874.1 ENSMUSG00000110874 ENSMUST00000215085 D030045P18Rik lincRNA Interval_39185 chr12 85666865 85667866 + 0 NA Intergenic Intergenic 4923 ENSMUSG00000113249.1 ENSMUSG00000113249 ENSMUST00000222443 Gm33312 processed_pseudogene Interval_169110 chr9 92583636 92584335 + 0 NA intron (ENSMUSG00000032374.14, intron 4 of 19) protein_coding-intron (ENSMUSG00000032374.14, intron 4 of 18) -17357 ENSMUSG00000032374.14 ENSMUSG00000032374 ENSMUST00000190075 Plod2 protein_coding Interval_7793 chr1 133732173 133733542 + 0 NA intron (ENSMUSG00000026463.17, intron 7 of 19) protein_coding-intron (ENSMUSG00000026463.17, intron 7 of 20) -6212 ENSMUSG00000098606.1 ENSMUSG00000098606 ENSMUST00000183597 Mir6903 miRNA Interval_90325 chr2 29777122 29778875 + 0 NA TTS (ENSMUSG00000039826.13) protein_coding-TTS (ENSMUSG00000039826.13) 9624 ENSMUSG00000039826.13 ENSMUSG00000039826 ENSMUST00000175644 Trub2 protein_coding Interval_35920 chr12 31938264 31938808 + 0 NA TTS (ENSMUSG00000035933.5) protein_coding-TTS (ENSMUSG00000035933.5) 1871 ENSMUSG00000002996.17 ENSMUSG00000002996 ENSMUST00000175666 Hbp1 protein_coding Interval_96146 chr2 120043976 120044919 + 0 NA intron (ENSMUSG00000074899.6, intron 65 of 65) protein_coding-intron (ENSMUSG00000074899.6, intron 65 of 65) 5580 ENSMUSG00000098488.7 ENSMUSG00000098488 ENSMUST00000130018 Pla2g4b protein_coding Interval_38815 chr12 82587540 82587892 + 0 NA promoter-TSS (ENSMUSG00000021219.16) protein_coding-promoter-TSS (ENSMUSG00000021219.16) -2256 ENSMUSG00000084705.1 ENSMUSG00000084705 ENSMUST00000122756 n-R5s63 rRNA Interval_4367 chr1 73174103 73174343 + 0 NA Intergenic Intergenic 35200 ENSMUSG00000102266.1 ENSMUSG00000102266 ENSMUST00000194107 Gm38106 TEC Interval_92700 chr2 63012253 63012420 + 0 NA intron (ENSMUSG00000059742.10, intron 2 of 6) protein_coding-intron (ENSMUSG00000059742.10, intron 2 of 15) 171926 ENSMUSG00000059742.10 ENSMUSG00000059742 ENSMUST00000131799 Kcnh7 protein_coding Interval_170784 chr9 110737821 110738285 + 0 NA intron (ENSMUSG00000032492.14, intron 2 of 6) protein_coding-intron (ENSMUSG00000032492.14, intron 1 of 13) -3808 ENSMUSG00000059741.13 ENSMUSG00000059741 ENSMUST00000153142 Myl3 protein_coding Interval_103321 chr3 38717890 38718359 + 0 NA Intergenic Intergenic 103877 ENSMUSG00000106168.1 ENSMUSG00000106168 ENSMUST00000200416 Gm43538 lincRNA Interval_44066 chr13 40673707 40674283 + 0 NA Intergenic Intergenic -29346 ENSMUSG00000114322.1 ENSMUSG00000114322 ENSMUST00000225346 Gm47041 TEC Interval_116464 chr4 113414071 113415023 + 0 NA Intergenic Intergenic 46360 ENSMUSG00000083384.1 ENSMUSG00000083384 ENSMUST00000119615 Gm12813 unprocessed_pseudogene Interval_155121 chr8 26807249 26807600 + 0 NA Intergenic Intergenic 27109 ENSMUSG00000110297.1 ENSMUSG00000110297 ENSMUST00000209789 Gm45647 processed_pseudogene Interval_60284 chr15 72209817 72210077 + 0 NA intron (ENSMUSG00000116068.1, intron 2 of 3) lincRNA-intron (ENSMUSG00000116068.1, intron 2 of 3) 45509 ENSMUSG00000095129.1 ENSMUSG00000095129 ENSMUST00000178482 Gm23217 snRNA Interval_71080 chr17 17749094 17750185 + 0 NA Intergenic Intergenic -33493 ENSMUSG00000084605.1 ENSMUSG00000084605 ENSMUST00000122656 Gm23837 misc_RNA Interval_38036 chr12 74332763 74334495 + 0 NA Intergenic Intergenic -12712 ENSMUSG00000113022.1 ENSMUSG00000113022 ENSMUST00000223349 Gm9544 processed_pseudogene Interval_14771 chr10 39722390 39722634 + 0 NA exon (ENSMUSG00000087177.7, exon 2 of 2) antisense-exon (ENSMUSG00000087177.7, exon 2 of 2) 9494 ENSMUSG00000087177.7 ENSMUSG00000087177 ENSMUST00000153113 E130307A14Rik antisense Interval_59670 chr15 57771942 57772293 + 0 NA intron (ENSMUSG00000071757.10, intron 2 of 2) protein_coding-intron (ENSMUSG00000071757.10, intron 2 of 3) -33451 ENSMUSG00000047807.10 ENSMUSG00000047807 ENSMUST00000176703 9330154K18Rik antisense Interval_84966 chr19 20436767 20437266 + 0 NA intron (ENSMUSG00000094732.2, intron 6 of 6) lincRNA-intron (ENSMUSG00000094732.2, intron 7 of 7) -12234 ENSMUSG00000114469.2 ENSMUSG00000114469 ENSMUST00000225910 C730002L08Rik processed_transcript Interval_112833 chr4 45398969 45399887 + 0 NA exon (ENSMUSG00000045973.18, exon 2 of 2) protein_coding-exon (ENSMUSG00000045973.18, exon 2 of 2) -2310 ENSMUSG00000093185.1 ENSMUSG00000093185 ENSMUST00000175444 Gm25692 miRNA Interval_5034 chr1 84499970 84500532 + 0 NA intron (ENSMUSG00000036766.12, intron 5 of 12) protein_coding-intron (ENSMUSG00000036766.12, intron 5 of 12) -104852 ENSMUSG00000104396.1 ENSMUSG00000104396 ENSMUST00000191700 Gm37959 TEC Interval_74357 chr17 49400045 49400568 + 0 NA Intergenic Intergenic -28136 ENSMUSG00000064120.14 ENSMUSG00000064120 ENSMUST00000173430 Mocs1 protein_coding Interval_86474 chr19 40872945 40873749 + 0 NA exon (ENSMUSG00000097740.2, exon 3 of 3) lincRNA-exon (ENSMUSG00000097740.2, exon 3 of 3) 5031 ENSMUSG00000097740.2 ENSMUSG00000097740 ENSMUST00000181195 E030044B06Rik lincRNA Interval_126754 chr5 92586205 92586598 + 0 NA intron (ENSMUSG00000057068.15, intron 5 of 5) protein_coding-intron (ENSMUSG00000057068.15, intron 3 of 4) 14924 ENSMUSG00000057068.15 ENSMUSG00000057068 ENSMUST00000082382 Fam47e protein_coding Interval_129657 chr5 121564358 121565184 + 0 NA Intergenic Intergenic 8067 ENSMUSG00000029455.14 ENSMUSG00000029455 ENSMUST00000152945 Aldh2 protein_coding Interval_84062 chr19 7017155 7017398 + 0 NA exon (ENSMUSG00000024965.9, exon 1 of 1) protein_coding-exon (ENSMUSG00000024965.9, exon 1 of 1) 2069 ENSMUSG00000024965.9 ENSMUSG00000024965 ENSMUST00000238171 Fermt3 protein_coding Interval_84646 chr19 14641305 14641818 + 0 NA Intergenic Intergenic -17106 ENSMUSG00000103488.1 ENSMUSG00000103488 ENSMUST00000193515 Gm37997 TEC Interval_109615 chr3 145196820 145197311 + 0 NA Intergenic Intergenic 48047 ENSMUSG00000028256.16 ENSMUSG00000028256 ENSMUST00000200353 Odf2l protein_coding Interval_132940 chr5 148857404 148858097 + 0 NA Intergenic Intergenic 36983 ENSMUSG00000087647.2 ENSMUSG00000087647 ENSMUST00000136919 Gm15407 lincRNA Interval_173454 chrX 94022628 94022863 + 0 NA Intergenic Intergenic -1115 ENSMUSG00000081055.1 ENSMUSG00000081055 ENSMUST00000119319 Gm6987 processed_pseudogene Interval_139299 chr6 98089347 98089518 + 0 NA Intergenic Intergenic -32364 ENSMUSG00000107902.1 ENSMUSG00000107902 ENSMUST00000205146 Gm32592 antisense Interval_157836 chr8 74820857 74823094 + 0 NA intron (ENSMUSG00000079011.9, intron 2 of 2) lincRNA-intron (ENSMUSG00000079011.9, intron 4 of 9) 11962 ENSMUSG00000079011.9 ENSMUSG00000079011 ENSMUST00000137218 Gm11033 lincRNA Interval_149387 chr7 98051900 98052419 + 0 NA intron (ENSMUSG00000030761.16, intron 46 of 46) protein_coding-intron (ENSMUSG00000030761.16, intron 47 of 47) 38969 ENSMUSG00000030761.16 ENSMUSG00000030761 ENSMUST00000131632 Myo7a protein_coding Interval_3608 chr1 59967289 59967916 + 0 NA intron (ENSMUSG00000041040.12, intron 4 of 7) protein_coding-intron (ENSMUSG00000041040.12, intron 4 of 7) -11579 ENSMUSG00000041040.12 ENSMUSG00000041040 ENSMUST00000189790 Fam117b protein_coding Interval_13380 chr10 17579238 17579920 + 0 NA intron (ENSMUSG00000112629.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000112629.1, intron 1 of 2) -52665 ENSMUSG00000111927.1 ENSMUSG00000111927 ENSMUST00000220318 Gm47770 lincRNA Interval_14512 chr10 34571147 34572334 + 0 NA intron (ENSMUSG00000019779.15, intron 2 of 5) protein_coding-intron (ENSMUSG00000019779.15, intron 3 of 8) 88208 ENSMUSG00000019779.15 ENSMUSG00000019779 ENSMUST00000215594 Frk protein_coding Interval_169526 chr9 98888397 98888839 + 0 NA exon (ENSMUSG00000110788.1, exon 1 of 1) processed_pseudogene-exon (ENSMUSG00000110788.1, exon 1 of 1) 407 ENSMUSG00000110788.1 ENSMUSG00000110788 ENSMUST00000215123 Gm33700 processed_pseudogene Interval_101913 chr3 11094104 11094456 + 0 NA Intergenic Intergenic -49922 ENSMUSG00000081537.2 ENSMUSG00000081537 ENSMUST00000118935 Gm37832 processed_pseudogene Interval_64345 chr16 10656849 10657338 + 0 NA intron (ENSMUSG00000068663.14, intron 18 of 22) protein_coding-intron (ENSMUSG00000068663.14, intron 18 of 20) 26446 ENSMUSG00000087384.1 ENSMUSG00000087384 ENSMUST00000126849 Gm15558 antisense Interval_147498 chr7 67758529 67760208 + 0 NA promoter-TSS (ENSMUSG00000108871.1) TEC-promoter-TSS (ENSMUSG00000108871.1) 51 ENSMUSG00000108871.1 ENSMUSG00000108871 ENSMUST00000207427 Gm45102 TEC Interval_131642 chr5 139033237 139035534 + 0 NA intron (ENSMUSG00000025855.13, intron 9 of 10) protein_coding-intron (ENSMUSG00000025855.13, intron 9 of 10) 39329 ENSMUSG00000075585.3 ENSMUSG00000075585 ENSMUST00000187923 6330403L08Rik antisense Interval_171477 chr9 118663739 118664399 + 0 NA intron (ENSMUSG00000039115.13, intron 8 of 27) protein_coding-intron (ENSMUSG00000039115.13, intron 8 of 27) -73874 ENSMUSG00000110676.1 ENSMUSG00000110676 ENSMUST00000212679 Gm45897 lincRNA Interval_108375 chr3 126350550 126351643 + 0 NA Intergenic Intergenic -12588 ENSMUSG00000046561.9 ENSMUSG00000046561 ENSMUST00000093976 Arsj protein_coding Interval_164466 chr9 37233687 37233940 + 0 NA intron (ENSMUSG00000032122.15, intron 3 of 5) protein_coding-intron (ENSMUSG00000032122.15, intron 15 of 17) 1341 ENSMUSG00000032122.15 ENSMUSG00000032122 ENSMUST00000162018 Slc37a2 protein_coding Interval_27535 chr11 68502420 68502610 + 0 NA promoter-TSS (ENSMUSG00000046207.14) protein_coding-promoter-TSS (ENSMUSG00000046207.14) -576 ENSMUSG00000046207.14 ENSMUSG00000046207 ENSMUST00000131669 Pik3r6 protein_coding Interval_95304 chr2 105975562 105976644 + 0 NA intron (ENSMUSG00000027166.14, intron 2 of 3) protein_coding-intron (ENSMUSG00000027166.14, intron 3 of 4) -16654 ENSMUSG00000093363.1 ENSMUSG00000093363 ENSMUST00000175622 Gm22002 miRNA Interval_64157 chr16 8767069 8767704 + 0 NA intron (ENSMUSG00000022710.17, intron 1 of 31) protein_coding-intron (ENSMUSG00000022710.17, intron 1 of 31) -1110 ENSMUSG00000084737.1 ENSMUSG00000084737 ENSMUST00000122788 Gm25805 snRNA Interval_3034 chr1 52429021 52429717 + 0 NA Intergenic Intergenic 15175 ENSMUSG00000065192.1 ENSMUSG00000065192 ENSMUST00000083258 Gm23460 snRNA Interval_170137 chr9 105430253 105430666 + 0 NA intron (ENSMUSG00000032570.17, intron 14 of 23) protein_coding-intron (ENSMUSG00000032570.17, intron 20 of 27) 27063 ENSMUSG00000032567.16 ENSMUSG00000032567 ENSMUST00000190934 Aste1 protein_coding Interval_62943 chr15 98069656 98070003 + 0 NA promoter-TSS (ENSMUSG00000088325.1) snoRNA-promoter-TSS (ENSMUSG00000088325.1) 77 ENSMUSG00000088325.1 ENSMUSG00000088325 ENSMUST00000157700 Gm25668 snoRNA Interval_29823 chr11 87073299 87074749 + 0 NA promoter-TSS (ENSMUSG00000061666.6) protein_coding-promoter-TSS (ENSMUSG00000061666.6) 38 ENSMUSG00000061666.6 ENSMUSG00000061666 ENSMUST00000020804 Gdpd1 protein_coding Interval_141118 chr6 125095458 125097829 + 0 NA promoter-TSS (ENSMUSG00000063870.12) protein_coding-promoter-TSS (ENSMUSG00000063870.12) -381 ENSMUSG00000098762.1 ENSMUSG00000098762 ENSMUST00000183346 Mir7045 miRNA Interval_17882 chr10 80569429 80570124 + 0 NA intron (ENSMUSG00000035397.8, intron 1 of 1) protein_coding-intron (ENSMUSG00000035397.8, intron 1 of 1) 7545 ENSMUSG00000035397.8 ENSMUSG00000035397 ENSMUST00000038558 Klf16 protein_coding Interval_78482 chr18 13570822 13571266 + 0 NA intron (ENSMUSG00000117608.1, intron 2 of 5) lincRNA-intron (ENSMUSG00000117608.1, intron 2 of 5) 30356 ENSMUSG00000117608.1 ENSMUSG00000117608 ENSMUST00000234112 AC103362.1 lincRNA Interval_130625 chr5 129287262 129287965 + 0 NA Intergenic Intergenic -76507 ENSMUSG00000104681.1 ENSMUSG00000104681 ENSMUST00000199076 Gm43001 lincRNA Interval_111135 chr4 12755999 12757099 + 0 NA Intergenic Intergenic -56157 ENSMUSG00000065823.1 ENSMUSG00000065823 ENSMUST00000083889 n-R5s182 rRNA Interval_101603 chr3 7575896 7576280 + 0 NA exon (ENSMUSG00000040329.14, exon 4 of 5) protein_coding-exon (ENSMUSG00000040329.14, exon 4 of 5) -36617 ENSMUSG00000097804.1 ENSMUSG00000097804 ENSMUST00000181286 Gm16685 antisense Interval_86598 chr19 41964801 41965199 + 0 NA promoter-TSS (ENSMUSG00000025159.8) protein_coding-promoter-TSS (ENSMUSG00000025159.8) -10188 ENSMUSG00000089102.1 ENSMUSG00000089102 ENSMUST00000158477 Gm23113 snRNA Interval_14906 chr10 40996972 40998688 + 0 NA Intergenic Intergenic -37365 ENSMUSG00000111098.1 ENSMUSG00000111098 ENSMUST00000214667 Gm48057 lincRNA Interval_43063 chr13 23554739 23556508 + 0 NA exon (ENSMUSG00000052565.7, exon 1 of 1) protein_coding-exon (ENSMUSG00000052565.7, exon 1 of 1) 2361 ENSMUSG00000052565.7 ENSMUSG00000052565 ENSMUST00000045301 H1f3 protein_coding Interval_138534 chr6 88980125 88980674 + 0 NA intron (ENSMUSG00000055403.13, intron 1 of 2) lincRNA-intron (ENSMUSG00000055403.13, intron 1 of 2) 29716 ENSMUSG00000055403.13 ENSMUSG00000055403 ENSMUST00000153981 4933427D06Rik lincRNA Interval_14216 chr10 29011981 29012243 + 0 NA Intergenic Intergenic -18016 ENSMUSG00000095478.2 ENSMUSG00000095478 ENSMUST00000178707 Gm9824 processed_pseudogene Interval_154381 chr8 15143002 15143238 + 0 NA intron (ENSMUSG00000110286.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000110286.1, intron 1 of 1) 2076 ENSMUSG00000110286.1 ENSMUSG00000110286 ENSMUST00000209946 Gm7706 lincRNA Interval_46688 chr13 69196578 69197625 + 0 NA Intergenic Intergenic 55872 ENSMUSG00000097522.1 ENSMUSG00000097522 ENSMUST00000181690 Gm26844 lincRNA Interval_132294 chr5 143986023 143986761 + 0 NA TTS (ENSMUSG00000075569.10) protein_coding-TTS (ENSMUSG00000075569.10) -5401 ENSMUSG00000091351.1 ENSMUSG00000091351 ENSMUST00000167009 Gm17135 antisense Interval_35709 chr12 28557795 28558120 + 0 NA intron (ENSMUSG00000020636.14, intron 9 of 11) protein_coding-intron (ENSMUSG00000020636.14, intron 9 of 11) -5558 ENSMUSG00000020633.14 ENSMUSG00000020633 ENSMUST00000020963 Dcdc2c protein_coding Interval_119921 chr4 140931870 140932869 + 0 NA intron (ENSMUSG00000028927.6, intron 4 of 4) protein_coding-intron (ENSMUSG00000028927.6, intron 7 of 15) 8210 ENSMUSG00000028927.6 ENSMUSG00000028927 ENSMUST00000130958 Padi2 protein_coding Interval_21360 chr10 128149567 128150194 + 0 NA intron (ENSMUSG00000040043.17, intron 3 of 14) protein_coding-intron (ENSMUSG00000040043.17, intron 2 of 12) 30417 ENSMUSG00000040043.17 ENSMUSG00000040043 ENSMUST00000218884 Rbms2 protein_coding Interval_171761 chr9 120795695 120796193 + 0 NA Intergenic Intergenic 3953 ENSMUSG00000111270.1 ENSMUSG00000111270 ENSMUST00000216870 Gm47066 lincRNA Interval_13479 chr10 18531390 18532577 + 0 NA TTS (ENSMUSG00000039835.16) protein_coding-TTS (ENSMUSG00000039835.16) 14081 ENSMUSG00000019853.6 ENSMUSG00000019853 ENSMUST00000214548 Hebp2 protein_coding Interval_161892 chr8 123491143 123491811 + 0 NA intron (ENSMUSG00000031967.15, intron 8 of 15) protein_coding-intron (ENSMUSG00000031967.15, intron 8 of 16) -1484 ENSMUSG00000031967.15 ENSMUSG00000031967 ENSMUST00000146795 Afg3l1 protein_coding Interval_75986 chr17 74176946 74177259 + 0 NA Intergenic Intergenic -12528 ENSMUSG00000117031.1 ENSMUSG00000117031 ENSMUST00000233609 Gm49882 processed_pseudogene Interval_131464 chr5 137394168 137395176 + 0 NA intron (ENSMUSG00000079173.11, intron 70 of 86) protein_coding-intron (ENSMUSG00000079173.11, intron 71 of 87) 7066 ENSMUSG00000079173.11 ENSMUSG00000079173 ENSMUST00000130056 Zan protein_coding Interval_121531 chr5 3281887 3282216 + 0 NA intron (ENSMUSG00000106658.1, intron 2 of 4) lincRNA-intron (ENSMUSG00000106658.1, intron 2 of 4) 11732 ENSMUSG00000106658.1 ENSMUSG00000106658 ENSMUST00000197473 Gm36548 lincRNA Interval_147792 chr7 73574832 73576113 + 0 NA Intergenic Intergenic -17325 ENSMUSG00000101970.8 ENSMUSG00000101970 ENSMUST00000184655 1810026B05Rik processed_transcript Interval_9160 chr1 154190115 154191005 + 0 NA Intergenic Intergenic -10627 ENSMUSG00000066797.6 ENSMUSG00000066797 ENSMUST00000086195 Zfp648 protein_coding Interval_91719 chr2 48813393 48815003 + 0 NA promoter-TSS (ENSMUSG00000052155.5) protein_coding-promoter-TSS (ENSMUSG00000052155.5) -3643 ENSMUSG00000082114.2 ENSMUSG00000082114 ENSMUST00000121234 Gm13489 processed_pseudogene Interval_151744 chr7 126372267 126373310 + 0 NA promoter-TSS (ENSMUSG00000030741.15) protein_coding-promoter-TSS (ENSMUSG00000030741.15) -3247 ENSMUSG00000030742.7 ENSMUSG00000030742 ENSMUST00000206731 Lat protein_coding Interval_10965 chr1 177622506 177623638 + 0 NA Intergenic Intergenic 13865 ENSMUSG00000103767.1 ENSMUSG00000103767 ENSMUST00000192759 Gm37858 TEC Interval_118309 chr4 130198929 130199671 + 0 NA Intergenic Intergenic 10556 ENSMUSG00000023120.9 ENSMUSG00000023120 ENSMUST00000023884 Ldc1 protein_coding Interval_48137 chr13 96561308 96561578 + 0 NA intron (ENSMUSG00000021669.15, intron 2 of 6) protein_coding-intron (ENSMUSG00000021669.15, intron 2 of 17) 5211 ENSMUSG00000113842.1 ENSMUSG00000113842 ENSMUST00000222511 Gm48138 TEC Interval_3442 chr1 58381176 58381871 + 0 NA Intergenic Intergenic 4611 ENSMUSG00000103839.1 ENSMUSG00000103839 ENSMUST00000194925 Gm37607 TEC Interval_8360 chr1 137928110 137928587 + 0 NA exon (ENSMUSG00000102277.1, exon 1 of 1) TEC-exon (ENSMUSG00000102277.1, exon 1 of 1) 178 ENSMUSG00000102277.1 ENSMUSG00000102277 ENSMUST00000192622 A130050O07Rik TEC Interval_172435 chrX 19943019 19943912 + 0 NA Intergenic Intergenic 49808 ENSMUSG00000080998.1 ENSMUSG00000080998 ENSMUST00000120313 Gm5384 processed_pseudogene Interval_140724 chr6 120884315 120884513 + 0 NA intron (ENSMUSG00000009112.4, intron 6 of 6) protein_coding-intron (ENSMUSG00000009112.4, intron 6 of 6) 13154 ENSMUSG00000004446.12 ENSMUSG00000004446 ENSMUST00000125915 Bid protein_coding Interval_84713 chr19 15866475 15867447 + 0 NA Intergenic Intergenic 63903 ENSMUSG00000117995.1 ENSMUSG00000117995 ENSMUST00000237461 Gm50348 lincRNA Interval_14684 chr10 38979686 38980041 + 0 NA intron (ENSMUSG00000019846.11, intron 1 of 9) protein_coding-intron (ENSMUSG00000019846.11, intron 1 of 37) 51574 ENSMUSG00000111431.1 ENSMUSG00000111431 ENSMUST00000213395 Gm17779 processed_pseudogene Interval_24593 chr11 34936237 34936548 + 0 NA Intergenic Intergenic 37375 ENSMUSG00000064577.1 ENSMUSG00000064577 ENSMUST00000082643 Gm25799 snRNA Interval_15188 chr10 43247846 43248197 + 0 NA intron (ENSMUSG00000038240.13, intron 1 of 7) protein_coding-intron (ENSMUSG00000038240.13, intron 1 of 7) 26285 ENSMUSG00000038240.13 ENSMUSG00000038240 ENSMUST00000162008 Pdss2 protein_coding Interval_14917 chr10 41079754 41080336 + 0 NA intron (ENSMUSG00000111576.1, intron 2 of 7) lincRNA-intron (ENSMUSG00000111576.1, intron 2 of 7) 4677 ENSMUSG00000111576.1 ENSMUSG00000111576 ENSMUST00000213704 Gm32284 lincRNA Interval_61539 chr15 82236526 82237249 + 0 NA intron (ENSMUSG00000068101.11, intron 4 of 4) protein_coding-intron (ENSMUSG00000068101.11, intron 4 of 4) -3356 ENSMUSG00000116009.1 ENSMUSG00000116009 ENSMUST00000230791 Gm49503 lincRNA Interval_135305 chr6 38188691 38188904 + 0 NA intron (ENSMUSG00000063455.16, intron 4 of 19) protein_coding-intron (ENSMUSG00000063455.16, intron 4 of 19) 65212 ENSMUSG00000063455.16 ENSMUSG00000063455 ENSMUST00000152464 D630045J12Rik protein_coding Interval_14582 chr10 36553970 36554192 + 0 NA intron (ENSMUSG00000044499.11, intron 2 of 5) protein_coding-intron (ENSMUSG00000044499.11, intron 2 of 5) 47192 ENSMUSG00000044499.11 ENSMUSG00000044499 ENSMUST00000171521 Hs3st5 protein_coding Interval_71504 chr17 24202940 24203572 + 0 NA TTS (ENSMUSG00000117406.1) protein_coding-TTS (ENSMUSG00000117406.1) 2240 ENSMUSG00000036473.16 ENSMUSG00000036473 ENSMUST00000201716 Tbc1d24 protein_coding Interval_20903 chr10 121885350 121886465 + 0 NA intron (ENSMUSG00000020121.15, intron 4 of 21) protein_coding-intron (ENSMUSG00000020121.15, intron 4 of 21) -53849 ENSMUSG00000112596.1 ENSMUSG00000112596 ENSMUST00000218664 Gm48804 TEC Interval_26523 chr11 58365065 58365362 + 0 NA Intergenic Intergenic -13830 ENSMUSG00000013643.13 ENSMUSG00000013643 ENSMUST00000108826 Lypd8 protein_coding Interval_59872 chr15 60397525 60398435 + 0 NA exon (ENSMUSG00000115159.1, exon 1 of 1) processed_pseudogene-exon (ENSMUSG00000115159.1, exon 1 of 1) 683 ENSMUSG00000115159.1 ENSMUSG00000115159 ENSMUST00000226405 Gm17892 processed_pseudogene Interval_73677 chr17 42703963 42704134 + 0 NA intron (ENSMUSG00000057899.7, intron 7 of 9) protein_coding-intron (ENSMUSG00000057899.7, intron 7 of 9) -11786 ENSMUSG00000023918.12 ENSMUSG00000023918 ENSMUST00000164524 Adgrf4 protein_coding Interval_159942 chr8 105304651 105306414 + 0 NA promoter-TSS (ENSMUSG00000014791.10) protein_coding-promoter-TSS (ENSMUSG00000014791.10) -813 ENSMUSG00000014791.10 ENSMUSG00000014791 ENSMUST00000212655 Elmo3 protein_coding Interval_29643 chr11 85765902 85766719 + 0 NA TTS (ENSMUSG00000085514.1) antisense-TTS (ENSMUSG00000085514.1) -5608 ENSMUSG00000093278.1 ENSMUSG00000093278 ENSMUST00000175537 Mir5110 miRNA Interval_82835 chr18 77301281 77301982 + 0 NA intron (ENSMUSG00000032818.16, intron 4 of 39) protein_coding-intron (ENSMUSG00000032818.16, intron 4 of 38) -2953 ENSMUSG00000118108.1 ENSMUSG00000118108 ENSMUST00000238018 Gm50284 antisense Interval_97904 chr2 145516801 145518008 + 0 NA intron (ENSMUSG00000063873.10, intron 3 of 4) protein_coding-intron (ENSMUSG00000063873.10, intron 3 of 15) -6747 ENSMUSG00000084178.1 ENSMUSG00000084178 ENSMUST00000121742 Gm11759 processed_pseudogene Interval_81746 chr18 64344721 64346092 + 0 NA intron (ENSMUSG00000045991.19, intron 1 of 1) protein_coding-intron (ENSMUSG00000045991.19, intron 1 of 1) 5386 ENSMUSG00000045991.19 ENSMUSG00000045991 ENSMUST00000175965 Onecut2 protein_coding Interval_139361 chr6 99422859 99423065 + 0 NA intron (ENSMUSG00000030067.17, intron 2 of 3) protein_coding-intron (ENSMUSG00000030067.17, intron 1 of 18) -34463 ENSMUSG00000093559.1 ENSMUSG00000093559 ENSMUST00000177278 Gm20705 sense_intronic Interval_81999 chr18 67024344 67024551 + 0 NA Intergenic Intergenic 7071 ENSMUSG00000117868.1 ENSMUSG00000117868 ENSMUST00000236079 Gm50165 lincRNA Interval_136942 chr6 64996622 64998139 + 0 NA Intergenic Intergenic 6433 ENSMUSG00000086176.4 ENSMUSG00000086176 ENSMUST00000137642 Gm15534 processed_pseudogene Interval_130281 chr5 125389175 125390141 + 0 NA promoter-TSS (ENSMUSG00000008348.9) protein_coding-promoter-TSS (ENSMUSG00000008348.9) 336 ENSMUSG00000072612.3 ENSMUSG00000072612 ENSMUST00000238478 Gm10382 antisense Interval_31238 chr11 99065469 99066510 + 0 NA exon (ENSMUSG00000017607.9, exon 13 of 13) protein_coding-exon (ENSMUSG00000017607.9, exon 13 of 13) 9352 ENSMUSG00000017607.9 ENSMUSG00000017607 ENSMUST00000123303 Tns4 protein_coding Interval_79779 chr18 35079937 35080668 + 0 NA intron (ENSMUSG00000118380.1, intron 5 of 5) processed_transcript-intron (ENSMUSG00000118380.1, intron 5 of 5) 7321 ENSMUSG00000117727.1 ENSMUSG00000117727 ENSMUST00000238134 Gm3587 lincRNA Interval_37157 chr12 59060590 59061885 + 0 NA exon (ENSMUSG00000020993.9, exon 1 of 6) protein_coding-exon (ENSMUSG00000020993.9, exon 1 of 6) 193 ENSMUSG00000020993.9 ENSMUSG00000020993 ENSMUST00000219652 Trappc6b protein_coding Interval_170209 chr9 106210873 106212783 + 0 NA promoter-TSS (ENSMUSG00000023277.13) protein_coding-promoter-TSS (ENSMUSG00000023277.13) -361 ENSMUSG00000023277.13 ENSMUSG00000023277 ENSMUST00000216541 Twf2 protein_coding Interval_36748 chr12 52895348 52896224 + 0 NA intron (ENSMUSG00000061603.8, intron 3 of 11) protein_coding-intron (ENSMUSG00000061603.8, intron 4 of 13) 99950 ENSMUSG00000061603.8 ENSMUSG00000061603 ENSMUST00000219786 Akap6 protein_coding Interval_139301 chr6 98111071 98111277 + 0 NA Intergenic Intergenic -10622 ENSMUSG00000107902.1 ENSMUSG00000107902 ENSMUST00000205146 Gm32592 antisense Interval_65582 chr16 23601349 23601770 + 0 NA promoter-TSS (ENSMUSG00000033355.6) protein_coding-promoter-TSS (ENSMUSG00000033355.6) -183 ENSMUSG00000033355.6 ENSMUSG00000033355 ENSMUST00000211349 Rtp4 protein_coding Interval_15112 chr10 42639768 42640482 + 0 NA intron (ENSMUSG00000038280.12, intron 2 of 6) protein_coding-intron (ENSMUSG00000038280.12, intron 2 of 5) -38841 ENSMUSG00000038280.12 ENSMUSG00000038280 ENSMUST00000154048 Ostm1 protein_coding Interval_2864 chr1 46916099 46916754 + 0 NA Intergenic Intergenic -19547 ENSMUSG00000100160.1 ENSMUSG00000100160 ENSMUST00000185210 Gm28527 processed_pseudogene Interval_121869 chr5 9006531 9007076 + 0 NA Intergenic Intergenic -7134 ENSMUSG00000084923.1 ENSMUSG00000084923 ENSMUST00000146928 Gm15611 lincRNA Interval_126095 chr5 77354432 77355166 + 0 NA intron (ENSMUSG00000036256.13, intron 3 of 5) protein_coding-intron (ENSMUSG00000036256.13, intron 2 of 4) 14431 ENSMUSG00000029250.5 ENSMUSG00000029250 ENSMUST00000150191 Polr2b protein_coding Interval_24240 chr11 31734194 31734410 + 0 NA Intergenic Intergenic 35654 ENSMUSG00000103635.1 ENSMUSG00000103635 ENSMUST00000192490 Gm38061 TEC Interval_80991 chr18 52447885 52448426 + 0 NA Intergenic Intergenic -17567 ENSMUSG00000024528.8 ENSMUSG00000024528 ENSMUST00000237434 Srfbp1 protein_coding Interval_137104 chr6 67375648 67376611 + 0 NA promoter-TSS (ENSMUSG00000018341.12) protein_coding-promoter-TSS (ENSMUSG00000018341.12) 9212 ENSMUSG00000107907.1 ENSMUSG00000107907 ENSMUST00000203207 Gm8574 processed_pseudogene Interval_52997 chr14 53072563 53073279 + 0 NA promoter-TSS (ENSMUSG00000096329.2) TR_V_gene-promoter-TSS (ENSMUSG00000096329.2) 158 ENSMUSG00000096329.2 ENSMUSG00000096329 ENSMUST00000103607 Trav13d-4 TR_V_gene Interval_30802 chr11 96564039 96564299 + 0 NA intron (ENSMUSG00000057058.16, intron 4 of 7) protein_coding-intron (ENSMUSG00000057058.16, intron 4 of 11) 80387 ENSMUSG00000057058.16 ENSMUSG00000057058 ENSMUST00000123814 Skap1 protein_coding Interval_15897 chr10 59052458 59052713 + 0 NA intron (ENSMUSG00000037990.18, intron 4 of 9) protein_coding-intron (ENSMUSG00000037990.18, intron 4 of 9) 87042 ENSMUSG00000098653.1 ENSMUSG00000098653 ENSMUST00000183751 Gm27672 miRNA Interval_174196 chrX 139357451 139359260 + 0 NA promoter-TSS (ENSMUSG00000084205.1) processed_pseudogene-promoter-TSS (ENSMUSG00000084205.1) -113 ENSMUSG00000084205.1 ENSMUSG00000084205 ENSMUST00000122380 Gm8061 processed_pseudogene Interval_9662 chr1 160834684 160835083 + 0 NA Intergenic Intergenic -4285 ENSMUSG00000103631.1 ENSMUSG00000103631 ENSMUST00000194822 Gm38060 lincRNA Interval_110074 chr3 153033593 153034461 + 0 NA Intergenic Intergenic -51975 ENSMUSG00000039037.5 ENSMUSG00000039037 ENSMUST00000161757 St6galnac5 protein_coding Interval_3828 chr1 63309027 63309890 + 0 NA exon (ENSMUSG00000027520.16, exon 3 of 3) protein_coding-exon (ENSMUSG00000027520.16, exon 3 of 3) -9075 ENSMUSG00000094214.1 ENSMUSG00000094214 ENSMUST00000083151 Gm23448 snRNA Interval_156314 chr8 47334134 47334647 + 0 NA intron (ENSMUSG00000038143.16, intron 7 of 7) protein_coding-intron (ENSMUSG00000038143.16, intron 1 of 4) 79447 ENSMUSG00000038143.16 ENSMUSG00000038143 ENSMUST00000181417 Stox2 protein_coding Interval_83167 chr18 82488585 82490389 + 0 NA intron (ENSMUSG00000041607.17, intron 1 of 5) protein_coding-intron (ENSMUSG00000041607.17, intron 1 of 6) 34534 ENSMUSG00000061684.6 ENSMUSG00000061684 ENSMUST00000130005 Rpl21-ps8 processed_pseudogene Interval_131528 chr5 137757191 137757647 + 0 NA promoter-TSS (ENSMUSG00000029723.16) protein_coding-promoter-TSS (ENSMUSG00000029723.16) -726 ENSMUSG00000029723.16 ENSMUSG00000029723 ENSMUST00000138698 Tsc22d4 protein_coding Interval_9643 chr1 160711336 160711611 + 0 NA intron (ENSMUSG00000026721.16, intron 8 of 12) protein_coding-intron (ENSMUSG00000026721.16, intron 7 of 20) 15208 ENSMUSG00000103200.1 ENSMUSG00000103200 ENSMUST00000193191 Gm37328 sense_intronic Interval_23114 chr11 20014707 20014994 + 0 NA intron (ENSMUSG00000045671.17, intron 5 of 5) protein_coding-intron (ENSMUSG00000045671.17, intron 4 of 5) 60280 ENSMUSG00000045671.17 ENSMUSG00000045671 ENSMUST00000123036 Spred2 protein_coding Interval_122331 chr5 21401037 21401369 + 0 NA intron (ENSMUSG00000064280.14, intron 1 of 18) protein_coding-intron (ENSMUSG00000064280.14, intron 1 of 7) -23798 ENSMUSG00000047221.5 ENSMUSG00000047221 ENSMUST00000146056 Fam185a protein_coding Interval_161106 chr8 117493278 117494042 + 0 NA Intergenic Intergenic -4631 ENSMUSG00000034330.10 ENSMUSG00000034330 ENSMUST00000081232 Plcg2 protein_coding Interval_169752 chr9 100963004 100964727 + 0 NA Intergenic Intergenic 8096 ENSMUSG00000037286.15 ENSMUSG00000037286 ENSMUST00000191345 Stag1 protein_coding Interval_126091 chr5 77309137 77310782 + 0 NA promoter-TSS (ENSMUSG00000029250.5) protein_coding-promoter-TSS (ENSMUSG00000029250.5) 100 ENSMUSG00000036285.10 ENSMUSG00000036285 ENSMUST00000139435 Noa1 protein_coding Interval_27745 chr11 69758093 69759651 + 0 NA promoter-TSS (ENSMUSG00000005198.15) protein_coding-promoter-TSS (ENSMUSG00000005198.15) 2972 ENSMUSG00000018776.10 ENSMUSG00000018776 ENSMUST00000102586 Slc35g3 protein_coding Interval_126053 chr5 77124940 77125941 + 0 NA Intergenic Intergenic -3092 ENSMUSG00000085858.1 ENSMUSG00000085858 ENSMUST00000156195 Gm15831 lincRNA Interval_71094 chr17 17899457 17899968 + 0 NA intron (ENSMUSG00000079700.7, intron 1 of 1) protein_coding-intron (ENSMUSG00000079700.7, intron 1 of 1) 7563 ENSMUSG00000116634.1 ENSMUSG00000116634 ENSMUST00000231820 Gm7531 processed_pseudogene Interval_74177 chr17 46916932 46917512 + 0 NA intron (ENSMUSG00000023978.5, intron 1 of 1) protein_coding-intron (ENSMUSG00000023978.5, intron 1 of 2) 6744 ENSMUSG00000023978.5 ENSMUSG00000023978 ENSMUST00000162469 Prph2 protein_coding Interval_174062 chrX 133947374 133947851 + 0 NA exon (ENSMUSG00000031255.14, exon 13 of 13) protein_coding-exon (ENSMUSG00000031255.14, exon 13 of 13) 34197 ENSMUSG00000031255.14 ENSMUSG00000031255 ENSMUST00000174542 Sytl4 protein_coding Interval_171205 chr9 115187023 115187440 + 0 NA intron (ENSMUSG00000040875.12, intron 6 of 11) protein_coding-intron (ENSMUSG00000040875.12, intron 4 of 9) -1173 ENSMUSG00000098127.1 ENSMUSG00000098127 ENSMUST00000183244 Gm4665 antisense Interval_87891 chr19 56914724 56916252 + 0 NA intron (ENSMUSG00000025083.18, intron 18 of 20) protein_coding-intron (ENSMUSG00000025083.18, intron 17 of 19) 21750 ENSMUSG00000025083.18 ENSMUSG00000025083 ENSMUST00000132851 Afap1l2 protein_coding Interval_38479 chr12 79326458 79326757 + 0 NA promoter-TSS (ENSMUSG00000059060.15) protein_coding-promoter-TSS (ENSMUSG00000059060.15) -746 ENSMUSG00000059060.15 ENSMUSG00000059060 ENSMUST00000221257 Rad51b protein_coding Interval_137878 chr6 83115192 83116139 + 0 NA promoter-TSS (ENSMUSG00000030036.8) protein_coding-promoter-TSS (ENSMUSG00000030036.8) -851 ENSMUSG00000030036.8 ENSMUSG00000030036 ENSMUST00000145403 Mogs protein_coding Interval_7982 chr1 135032423 135032908 + 0 NA intron (ENSMUSG00000042793.13, intron 4 of 17) protein_coding-intron (ENSMUSG00000042793.13, intron 4 of 17) -10574 ENSMUSG00000042793.13 ENSMUSG00000042793 ENSMUST00000139369 Lgr6 protein_coding Interval_86365 chr19 38976006 38977219 + 0 NA promoter-TSS (ENSMUSG00000114610.1) unprocessed_pseudogene-promoter-TSS (ENSMUSG00000114610.1) -35 ENSMUSG00000114610.1 ENSMUSG00000114610 ENSMUST00000225458 Cyp2c52-ps unprocessed_pseudogene Interval_1245 chr1 18057109 18059067 + 0 NA intron (ENSMUSG00000101717.2, intron 1 of 1) transcribed_unprocessed_pseudogene-intron (ENSMUSG00000101717.2, intron 1 of 1) 181 ENSMUSG00000101717.2 ENSMUSG00000101717 ENSMUST00000188360 Gm45784 transcribed_unprocessed_pseudogene Interval_167913 chr9 74178520 74178803 + 0 NA intron (ENSMUSG00000044976.17, intron 13 of 19) protein_coding-intron (ENSMUSG00000044976.17, intron 13 of 19) 68305 ENSMUSG00000044976.17 ENSMUSG00000044976 ENSMUST00000149439 Wdr72 protein_coding Interval_49826 chr13 116731815 116732052 + 0 NA Intergenic Intergenic -54228 ENSMUSG00000114731.1 ENSMUSG00000114731 ENSMUST00000224048 Gm47914 lincRNA Interval_45911 chr13 59107676 59108281 + 0 NA intron (ENSMUSG00000055254.15, intron 16 of 17) protein_coding-intron (ENSMUSG00000055254.15, intron 16 of 17) -23885 ENSMUSG00000114437.1 ENSMUSG00000114437 ENSMUST00000225244 4930415C11Rik antisense Interval_95435 chr2 109313592 109313915 + 0 NA intron (ENSMUSG00000027115.14, intron 12 of 16) protein_coding-intron (ENSMUSG00000027115.14, intron 12 of 16) 21730 ENSMUSG00000027115.14 ENSMUSG00000027115 ENSMUST00000162515 Kif18a protein_coding Interval_82096 chr18 67701204 67701417 + 0 NA intron (ENSMUSG00000024539.17, intron 2 of 8) protein_coding-intron (ENSMUSG00000024539.17, intron 2 of 9) -11086 ENSMUSG00000024539.17 ENSMUSG00000024539 ENSMUST00000128169 Ptpn2 protein_coding Interval_48325 chr13 98201158 98202199 + 0 NA intron (ENSMUSG00000021662.11, intron 1 of 34) protein_coding-intron (ENSMUSG00000021662.11, intron 1 of 35) 52479 ENSMUSG00000041747.3 ENSMUSG00000041747 ENSMUST00000224842 Utp15 protein_coding Interval_147033 chr7 58826195 58826539 + 0 NA intron (ENSMUSG00000025324.8, intron 17 of 20) protein_coding-intron (ENSMUSG00000025324.8, intron 17 of 20) 11571 ENSMUSG00000086926.2 ENSMUSG00000086926 ENSMUST00000117765 Gm6226 processed_pseudogene Interval_121341 chr4 155094438 155095740 + 0 NA intron (ENSMUSG00000029049.14, intron 6 of 12) protein_coding-intron (ENSMUSG00000029049.14, intron 6 of 13) 8500 ENSMUSG00000029049.14 ENSMUSG00000029049 ENSMUST00000129415 Morn1 protein_coding Interval_63623 chr15 102405241 102406827 + 0 NA promoter-TSS (ENSMUSG00000001280.13) protein_coding-promoter-TSS (ENSMUSG00000001280.13) -109 ENSMUSG00000001280.13 ENSMUSG00000001280 ENSMUST00000168802 Sp1 protein_coding Interval_87646 chr19 53970590 53971135 + 0 NA intron (ENSMUSG00000024976.14, intron 2 of 2) protein_coding-intron (ENSMUSG00000024976.14, intron 1 of 8) -8093 ENSMUSG00000117704.1 ENSMUSG00000117704 ENSMUST00000235879 Gm50273 TEC Interval_154846 chr8 24341604 24342022 + 0 NA Intergenic Intergenic 17623 ENSMUSG00000109299.1 ENSMUSG00000109299 ENSMUST00000207438 Gm45164 lincRNA Interval_58179 chr15 30382705 30384262 + 0 NA intron (ENSMUSG00000022240.10, intron 2 of 2) protein_coding-intron (ENSMUSG00000022240.10, intron 2 of 22) -45361 ENSMUSG00000115073.1 ENSMUSG00000115073 ENSMUST00000226263 Gm49283 TEC Interval_91486 chr2 39297531 39298286 + 0 NA Intergenic Intergenic 23802 ENSMUSG00000081144.1 ENSMUSG00000081144 ENSMUST00000121053 Vmn2r-ps2 processed_pseudogene Interval_90791 chr2 32627753 32629934 + 0 NA promoter-TSS (ENSMUSG00000026817.14) protein_coding-promoter-TSS (ENSMUSG00000026817.14) 3405 ENSMUSG00000026817.14 ENSMUSG00000026817 ENSMUST00000135392 Ak1 protein_coding Interval_123136 chr5 30040809 30041173 + 0 NA Intergenic Intergenic 27670 ENSMUSG00000025746.11 ENSMUSG00000025746 ENSMUST00000199765 Il6 protein_coding Interval_54605 chr14 71102142 71102349 + 0 NA intron (ENSMUSG00000115671.1, intron 1 of 7) lincRNA-intron (ENSMUSG00000115671.1, intron 1 of 7) 14975 ENSMUSG00000115671.1 ENSMUSG00000115671 ENSMUST00000227525 Gm49289 lincRNA Interval_143279 chr7 4922470 4924256 + 0 NA intron (ENSMUSG00000035285.6, intron 1 of 1) protein_coding-intron (ENSMUSG00000035285.6, intron 2 of 2) 386 ENSMUSG00000035285.6 ENSMUSG00000035285 ENSMUST00000208754 Nat14 protein_coding Interval_113023 chr4 46976829 46977071 + 0 NA intron (ENSMUSG00000039809.10, intron 1 of 18) protein_coding-intron (ENSMUSG00000039809.10, intron 1 of 18) 33831 ENSMUSG00000048824.7 ENSMUSG00000048824 ENSMUST00000135777 Gm568 lincRNA Interval_113440 chr4 55004683 55006155 + 0 NA intron (ENSMUSG00000060206.11, intron 1 of 12) protein_coding-intron (ENSMUSG00000060206.11, intron 1 of 12) 60371 ENSMUSG00000060206.11 ENSMUSG00000060206 ENSMUST00000079605 Zfp462 protein_coding Interval_35562 chr12 24830803 24832232 + 0 NA promoter-TSS (ENSMUSG00000020646.17) protein_coding-promoter-TSS (ENSMUSG00000020646.17) -114 ENSMUSG00000020646.17 ENSMUSG00000020646 ENSMUST00000222994 Mboat2 protein_coding Interval_6912 chr1 120604832 120605320 + 0 NA intron (ENSMUSG00000058665.8, intron 1 of 1) protein_coding-intron (ENSMUSG00000058665.8, intron 1 of 1) 2658 ENSMUSG00000058665.8 ENSMUSG00000058665 ENSMUST00000079721 En1 protein_coding Interval_18572 chr10 87971345 87971744 + 0 NA Intergenic Intergenic 4697 ENSMUSG00000112222.1 ENSMUSG00000112222 ENSMUST00000219550 Tyms-ps processed_pseudogene Interval_151635 chr7 125565776 125566009 + 0 NA intron (ENSMUSG00000030748.9, intron 3 of 11) protein_coding-intron (ENSMUSG00000030748.9, intron 3 of 10) 6225 ENSMUSG00000108524.1 ENSMUSG00000108524 ENSMUST00000205394 Gm44876 antisense Interval_96958 chr2 129947817 129948494 + 0 NA promoter-TSS (ENSMUSG00000100255.1) lincRNA-promoter-TSS (ENSMUSG00000100255.1) -413 ENSMUSG00000100255.1 ENSMUSG00000100255 ENSMUST00000187719 Gm28196 lincRNA Interval_7641 chr1 132741258 132742444 + 0 NA promoter-TSS (ENSMUSG00000026442.14) protein_coding-promoter-TSS (ENSMUSG00000026442.14) 12496 ENSMUSG00000101126.1 ENSMUSG00000101126 ENSMUST00000189499 Gm10538 antisense Interval_127853 chr5 108262467 108263404 + 0 NA Intergenic Intergenic -13985 ENSMUSG00000029265.4 ENSMUSG00000029265 ENSMUST00000154862 Dr1 protein_coding Interval_91007 chr2 34150690 34151347 + 0 NA Intergenic Intergenic -39574 ENSMUSG00000103413.1 ENSMUSG00000103413 ENSMUST00000147871 Gm38389 lincRNA Interval_140214 chr6 115591643 115592662 + 0 NA intron (ENSMUSG00000068011.4, intron 1 of 3) protein_coding-intron (ENSMUSG00000068011.4, intron 1 of 2) 424 ENSMUSG00000068011.4 ENSMUSG00000068011 ENSMUST00000112957 Mkrn2os protein_coding Interval_124950 chr5 61776118 61776933 + 0 NA Intergenic Intergenic -32291 ENSMUSG00000089992.3 ENSMUSG00000089992 ENSMUST00000053876 G6pd2 protein_coding Interval_138656 chr6 90818732 90819220 + 0 NA intron (ENSMUSG00000034312.15, intron 2 of 15) protein_coding-intron (ENSMUSG00000034312.15, intron 2 of 15) -24501 ENSMUSG00000107795.1 ENSMUSG00000107795 ENSMUST00000204401 Gm44105 sense_intronic Interval_154355 chr8 14942473 14942903 + 0 NA exon (ENSMUSG00000071176.10, exon 9 of 29) protein_coding-exon (ENSMUSG00000071176.10, exon 9 of 29) -2613 ENSMUSG00000071176.10 ENSMUSG00000071176 ENSMUST00000162636 Arhgef10 protein_coding Interval_41619 chr12 117047111 117048320 + 0 NA intron (ENSMUSG00000056553.14, intron 13 of 13) protein_coding-intron (ENSMUSG00000056553.14, intron 12 of 22) 103500 ENSMUSG00000099907.1 ENSMUSG00000099907 ENSMUST00000186114 Gm10421 processed_transcript Interval_112303 chr4 40220531 40221965 + 0 NA promoter-TSS (ENSMUSG00000040296.15) protein_coding-promoter-TSS (ENSMUSG00000040296.15) 18577 ENSMUSG00000040296.15 ENSMUSG00000040296 ENSMUST00000149539 Ddx58 protein_coding Interval_149986 chr7 104227875 104228599 + 0 NA TTS (ENSMUSG00000072244.11) protein_coding-TTS (ENSMUSG00000072244.11) 2730 ENSMUSG00000072244.11 ENSMUSG00000072244 ENSMUST00000214578 Trim6 protein_coding Interval_16872 chr10 69374008 69375389 + 0 NA Intergenic Intergenic -1386 ENSMUSG00000112509.1 ENSMUSG00000112509 ENSMUST00000219632 Gm47211 processed_pseudogene Interval_29131 chr11 80499655 80500069 + 0 NA intron (ENSMUSG00000035441.14, intron 21 of 21) protein_coding-intron (ENSMUSG00000035441.14, intron 21 of 21) 9244 ENSMUSG00000085078.1 ENSMUSG00000085078 ENSMUST00000133400 C030013C21Rik sense_intronic Interval_32824 chr11 111142821 111143023 + 0 NA Intergenic Intergenic 76758 ENSMUSG00000041695.2 ENSMUSG00000041695 ENSMUST00000042970 Kcnj2 protein_coding Interval_68620 chr16 81634939 81635570 + 0 NA Intergenic Intergenic -156962 ENSMUSG00000116803.1 ENSMUSG00000116803 ENSMUST00000231467 Gm49558 processed_pseudogene Interval_32176 chr11 105943076 105945057 + 0 NA promoter-TSS (ENSMUSG00000019590.16) protein_coding-promoter-TSS (ENSMUSG00000019590.16) 362 ENSMUSG00000103469.1 ENSMUSG00000103469 ENSMUST00000195385 Gm9910 TEC Interval_104074 chr3 58210951 58211949 + 0 NA Intergenic Intergenic 47518 ENSMUSG00000104586.1 ENSMUSG00000104586 ENSMUST00000200072 4921539H07Rik lincRNA Interval_27581 chr11 68840662 68841744 + 0 NA intron (ENSMUSG00000018736.14, intron 4 of 5) protein_coding-intron (ENSMUSG00000018736.14, intron 4 of 8) 18793 ENSMUSG00000018736.14 ENSMUSG00000018736 ENSMUST00000127469 Ndel1 protein_coding Interval_138872 chr6 92784711 92785005 + 0 NA intron (ENSMUSG00000030022.14, intron 28 of 29) protein_coding-intron (ENSMUSG00000030022.14, intron 38 of 39) -42774 ENSMUSG00000048636.7 ENSMUSG00000048636 ENSMUST00000133858 A730049H05Rik protein_coding Interval_136316 chr6 52965482 52966102 + 0 NA intron (ENSMUSG00000063568.11, intron 1 of 4) protein_coding-intron (ENSMUSG00000063568.11, intron 1 of 4) 44740 ENSMUSG00000089209.1 ENSMUSG00000089209 ENSMUST00000158584 Gm26215 scaRNA Interval_135638 chr6 42212314 42212713 + 0 NA Intergenic Intergenic -2815 ENSMUSG00000051917.3 ENSMUSG00000051917 ENSMUST00000063489 Tas2r144 protein_coding Interval_60032 chr15 64113279 64113809 + 0 NA intron (ENSMUSG00000022377.16, intron 25 of 30) protein_coding-intron (ENSMUSG00000022377.16, intron 25 of 30) 10262 ENSMUSG00000022377.16 ENSMUSG00000022377 ENSMUST00000175963 Asap1 protein_coding Interval_84126 chr19 7368779 7370836 + 0 NA exon (ENSMUSG00000117743.1, exon 2 of 2) antisense-exon (ENSMUSG00000117743.1, exon 2 of 2) 5010 ENSMUSG00000024970.5 ENSMUSG00000024970 ENSMUST00000236817 Spindoc protein_coding Interval_119521 chr4 138111466 138112033 + 0 NA intron (ENSMUSG00000028760.16, intron 10 of 12) protein_coding-intron (ENSMUSG00000028760.16, intron 9 of 9) 26769 ENSMUSG00000084804.1 ENSMUSG00000084804 ENSMUST00000124620 1700095J12Rik antisense Interval_139748 chr6 108351663 108352425 + 0 NA exon (ENSMUSG00000030102.11, exon 7 of 62) protein_coding-exon (ENSMUSG00000030102.11, exon 7 of 62) -35390 ENSMUSG00000030102.11 ENSMUSG00000030102 ENSMUST00000205005 Itpr1 protein_coding Interval_151198 chr7 119476303 119477364 + 0 NA TTS (ENSMUSG00000030963.6) protein_coding-TTS (ENSMUSG00000030963.6) 2422 ENSMUSG00000030963.6 ENSMUSG00000030963 ENSMUST00000207261 Umod protein_coding Interval_33137 chr11 114683211 114684621 + 0 NA intron (ENSMUSG00000034714.9, intron 1 of 2) protein_coding-intron (ENSMUSG00000034714.9, intron 1 of 13) 8400 ENSMUSG00000034714.9 ENSMUSG00000034714 ENSMUST00000141111 Ttyh2 protein_coding Interval_97030 chr2 130654007 130654229 + 0 NA TTS (ENSMUSG00000068290.11) protein_coding-TTS (ENSMUSG00000068290.11) 659 ENSMUSG00000068290.11 ENSMUSG00000068290 ENSMUST00000135072 Ddrgk1 protein_coding Interval_45428 chr13 55112138 55112745 + 0 NA promoter-TSS (ENSMUSG00000021481.11) protein_coding-promoter-TSS (ENSMUSG00000021481.11) -12187 ENSMUSG00000025878.16 ENSMUSG00000025878 ENSMUST00000124561 Uimc1 protein_coding Interval_123904 chr5 36412025 36413676 + 0 NA Intergenic Intergenic -46932 ENSMUSG00000029093.14 ENSMUSG00000029093 ENSMUST00000141508 Sorcs2 protein_coding Interval_172218 chrX 10070589 10070936 + 0 NA intron (ENSMUSG00000090084.7, intron 1 of 8) protein_coding-intron (ENSMUSG00000090084.7, intron 1 of 8) 46914 ENSMUSG00000090084.7 ENSMUSG00000090084 ENSMUST00000147334 Srpx protein_coding Interval_121166 chr4 153706562 153707314 + 0 NA Intergenic Intergenic -169446 ENSMUSG00000077519.1 ENSMUSG00000077519 ENSMUST00000104331 Gm25880 snoRNA Interval_44593 chr13 46571038 46571531 + 0 NA intron (ENSMUSG00000021373.16, intron 4 of 9) protein_coding-intron (ENSMUSG00000021373.16, intron 4 of 12) 48496 ENSMUSG00000114596.1 ENSMUSG00000114596 ENSMUST00000225040 Gm47523 antisense Interval_116107 chr4 107733081 107734419 + 0 NA intron (ENSMUSG00000085549.7, intron 3 of 3) lincRNA-intron (ENSMUSG00000085549.7, intron 3 of 3) 26715 ENSMUSG00000084874.4 ENSMUSG00000084874 ENSMUST00000154610 Gm12906 processed_pseudogene Interval_105973 chr3 90378377 90379596 + 0 NA Intergenic Intergenic 9995 ENSMUSG00000027932.14 ENSMUSG00000027932 ENSMUST00000127064 Slc27a3 protein_coding Interval_20289 chr10 116685593 116686261 + 0 NA Intergenic Intergenic 11336 ENSMUSG00000097104.1 ENSMUSG00000097104 ENSMUST00000181656 Gm26579 lincRNA Interval_70552 chr17 11962301 11963145 + 0 NA intron (ENSMUSG00000023826.16, intron 8 of 10) protein_coding-intron (ENSMUSG00000023826.16, intron 9 of 11) -156606 ENSMUSG00000023827.8 ENSMUSG00000023827 ENSMUST00000167905 Agpat4 protein_coding Interval_143750 chr7 16061337 16062252 + 0 NA promoter-TSS (ENSMUSG00000078796.4) protein_coding-promoter-TSS (ENSMUSG00000078796.4) -10127 ENSMUSG00000078796.4 ENSMUSG00000078796 ENSMUST00000108509 Zfp541 protein_coding Interval_102870 chr3 32425843 32426374 + 0 NA intron (ENSMUSG00000027665.13, intron 1 of 20) protein_coding-intron (ENSMUSG00000027665.13, intron 1 of 20) -28479 ENSMUSG00000103039.1 ENSMUSG00000103039 ENSMUST00000192994 Gm37123 TEC Interval_4854 chr1 80258143 80259007 + 0 NA Intergenic Intergenic -2378 ENSMUSG00000103404.1 ENSMUSG00000103404 ENSMUST00000192258 Gm37932 TEC Interval_112417 chr4 41134731 41136684 + 0 NA promoter-TSS (ENSMUSG00000036241.3) protein_coding-promoter-TSS (ENSMUSG00000036241.3) -2863 ENSMUSG00000081437.1 ENSMUSG00000081437 ENSMUST00000120536 Gm12402 processed_pseudogene Interval_110830 chr4 8798613 8799756 + 0 NA intron (ENSMUSG00000041235.12, intron 3 of 37) protein_coding-intron (ENSMUSG00000041235.12, intron 3 of 37) -56047 ENSMUSG00000041235.12 ENSMUSG00000041235 ENSMUST00000222546 Chd7 protein_coding Interval_47795 chr13 92986463 92987835 + 0 NA Intergenic Intergenic -86230 ENSMUSG00000114382.1 ENSMUSG00000114382 ENSMUST00000225665 Gm4814 antisense Interval_35954 chr12 32801078 32801643 + 0 NA Intergenic Intergenic -18185 ENSMUSG00000020572.8 ENSMUSG00000020572 ENSMUST00000218491 Nampt protein_coding Interval_51134 chr14 24025285 24025505 + 0 NA Intergenic Intergenic -10904 ENSMUSG00000063142.15 ENSMUSG00000063142 ENSMUST00000190339 Kcnma1 protein_coding Interval_48659 chr13 100894058 100894608 + 0 NA intron (ENSMUSG00000100596.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000100596.1, intron 1 of 2) 15556 ENSMUSG00000114738.1 ENSMUSG00000114738 ENSMUST00000225803 Gm41041 processed_pseudogene Interval_91388 chr2 38460595 38460789 + 0 NA Intergenic Intergenic -19646 ENSMUSG00000064468.1 ENSMUSG00000064468 ENSMUST00000082534 Gm25081 snRNA Interval_163087 chr9 15157598 15157968 + 0 NA Intergenic Intergenic -45675 ENSMUSG00000031936.9 ENSMUSG00000031936 ENSMUST00000159985 Hephl1 protein_coding Interval_82421 chr18 73882478 73882682 + 0 NA Intergenic Intergenic 23193 ENSMUSG00000064036.15 ENSMUSG00000064036 ENSMUST00000134847 Mro protein_coding Interval_122379 chr5 21813811 21814431 + 0 NA intron (ENSMUSG00000029015.9, intron 11 of 13) protein_coding-intron (ENSMUSG00000029015.9, intron 17 of 19) 6396 ENSMUSG00000029015.9 ENSMUSG00000029015 ENSMUST00000150012 Slc26a5 protein_coding Interval_666 chr1 9729534 9730417 + 0 NA intron (ENSMUSG00000045210.8, intron 2 of 2) protein_coding-intron (ENSMUSG00000045210.8, intron 2 of 2) 18407 ENSMUSG00000045210.8 ENSMUSG00000045210 ENSMUST00000057438 Vcpip1 protein_coding Interval_172527 chrX 26204480 26204799 + 0 NA intron (ENSMUSG00000082639.8, intron 6 of 8) protein_coding-intron (ENSMUSG00000082639.8, intron 6 of 8) -25342 ENSMUSG00000080498.2 ENSMUSG00000080498 ENSMUST00000116848 Gm26302 miRNA Interval_112321 chr4 40457618 40458250 + 0 NA Intergenic Intergenic 1099 ENSMUSG00000089585.1 ENSMUSG00000089585 ENSMUST00000158960 Gm23338 snoRNA Interval_103811 chr3 53206468 53206815 + 0 NA intron (ENSMUSG00000048332.13, intron 2 of 3) protein_coding-intron (ENSMUSG00000048332.13, intron 2 of 3) -22684 ENSMUSG00000048332.13 ENSMUSG00000048332 ENSMUST00000196913 Lhfp protein_coding Interval_165609 chr9 50342746 50342932 + 0 NA Intergenic Intergenic 2129 ENSMUSG00000058443.5 ENSMUSG00000058443 ENSMUST00000076364 Rpl10-ps3 protein_coding Interval_155289 chr8 30915551 30916710 + 0 NA Intergenic Intergenic -87778 ENSMUSG00000109614.1 ENSMUSG00000109614 ENSMUST00000211579 Gm45252 processed_pseudogene Interval_111347 chr4 19562072 19562612 + 0 NA intron (ENSMUSG00000028228.5, intron 1 of 4) protein_coding-intron (ENSMUSG00000028228.5, intron 1 of 15) -12820 ENSMUSG00000028229.11 ENSMUSG00000028229 ENSMUST00000029888 Rmdn1 protein_coding Interval_4998 chr1 84035145 84035643 + 0 NA TTS (ENSMUSG00000045658.16) protein_coding-TTS (ENSMUSG00000045658.16) 99116 ENSMUSG00000102750.1 ENSMUSG00000102750 ENSMUST00000193393 Gm37058 TEC Interval_14405 chr10 33032982 33033156 + 0 NA Intergenic Intergenic -47485 ENSMUSG00000019787.9 ENSMUSG00000019787 ENSMUST00000219000 Trdn protein_coding Interval_138813 chr6 92144380 92145768 + 0 NA promoter-TSS (ENSMUSG00000005893.14) protein_coding-promoter-TSS (ENSMUSG00000005893.14) 1219 ENSMUSG00000108199.1 ENSMUSG00000108199 ENSMUST00000204538 Gm44249 TEC Interval_45305 chr13 54191949 54192727 + 0 NA intron (ENSMUSG00000034987.4, intron 1 of 2) protein_coding-intron (ENSMUSG00000034987.4, intron 1 of 2) -21669 ENSMUSG00000034987.4 ENSMUSG00000034987 ENSMUST00000211742 Hrh2 protein_coding Interval_8899 chr1 151921298 151921672 + 0 NA promoter-TSS (ENSMUSG00000032666.16) protein_coding-promoter-TSS (ENSMUSG00000032666.16) 46066 ENSMUSG00000100685.1 ENSMUSG00000100685 ENSMUST00000187716 Gm28610 antisense Interval_132116 chr5 142821138 142822223 + 0 NA Intergenic Intergenic 31519 ENSMUSG00000082308.1 ENSMUSG00000082308 ENSMUST00000117498 Gm15770 processed_pseudogene Interval_74787 chr17 56540371 56541144 + 0 NA Intergenic Intergenic 13630 ENSMUSG00000110218.1 ENSMUSG00000110218 ENSMUST00000209718 Gm20219 protein_coding Interval_100314 chr2 168327888 168328324 + 0 NA Intergenic Intergenic -7594 ENSMUSG00000064961.1 ENSMUSG00000064961 ENSMUST00000083027 Gm22704 snoRNA Interval_76606 chr17 82376659 82377605 + 0 NA Intergenic Intergenic 21739 ENSMUSG00000117643.1 ENSMUSG00000117643 ENSMUST00000234825 Gm9390 processed_pseudogene Interval_66089 chr16 31541106 31541354 + 0 NA Intergenic Intergenic 32843 ENSMUSG00000116762.1 ENSMUSG00000116762 ENSMUST00000231805 Gm46560 lincRNA Interval_17636 chr10 78396137 78396736 + 0 NA Intergenic Intergenic 3116 ENSMUSG00000064317.5 ENSMUSG00000064317 ENSMUST00000072739 Gm10146 processed_pseudogene Interval_138696 chr6 91240433 91241273 + 0 NA intron (ENSMUSG00000064080.12, intron 2 of 16) protein_coding-intron (ENSMUSG00000064080.12, intron 2 of 17) 28026 ENSMUSG00000064080.12 ENSMUSG00000064080 ENSMUST00000137029 Fbln2 protein_coding Interval_24471 chr11 33512718 33514144 + 0 NA promoter-TSS (ENSMUSG00000040594.19) protein_coding-promoter-TSS (ENSMUSG00000040594.19) -60917 ENSMUSG00000040594.19 ENSMUSG00000040594 ENSMUST00000147751 Ranbp17 protein_coding Interval_24938 chr11 41710175 41710396 + 0 NA promoter-TSS (ENSMUSG00000087306.7) processed_transcript-promoter-TSS (ENSMUSG00000087306.7) -57 ENSMUSG00000087306.7 ENSMUSG00000087306 ENSMUST00000139508 A230004M16Rik processed_transcript Interval_81965 chr18 66468799 66469543 + 0 NA Intergenic Intergenic 10596 ENSMUSG00000024521.8 ENSMUSG00000024521 ENSMUST00000236933 Pmaip1 protein_coding Interval_36488 chr12 46013838 46014060 + 0 NA Intergenic Intergenic 29606 ENSMUSG00000064800.1 ENSMUSG00000064800 ENSMUST00000082866 Gm24948 snoRNA Interval_77327 chr17 88016128 88016675 + 0 NA intron (ENSMUSG00000005371.15, intron 1 of 22) protein_coding-intron (ENSMUSG00000005371.15, intron 1 of 22) 41306 ENSMUSG00000005370.4 ENSMUSG00000005370 ENSMUST00000234756 Msh6 protein_coding Interval_155441 chr8 33617745 33618597 + 0 NA intron (ENSMUSG00000009630.10, intron 6 of 6) protein_coding-intron (ENSMUSG00000009630.10, intron 6 of 6) 18083 ENSMUSG00000052906.7 ENSMUSG00000052906 ENSMUST00000210807 Ubxn8 protein_coding Interval_42903 chr13 21248766 21250345 + 0 NA Intergenic Intergenic 43176 ENSMUSG00000004344.12 ENSMUSG00000004344 ENSMUST00000110491 Gpx5 protein_coding Interval_149251 chr7 96689572 96689789 + 0 NA intron (ENSMUSG00000048078.16, intron 1 of 4) protein_coding-intron (ENSMUSG00000048078.16, intron 7 of 32) -60611 ENSMUSG00000085792.2 ENSMUSG00000085792 ENSMUST00000155217 Gm15414 antisense Interval_19594 chr10 104890072 104890731 + 0 NA Intergenic Intergenic -15917 ENSMUSG00000112044.1 ENSMUSG00000112044 ENSMUST00000218141 Gm48184 processed_pseudogene Interval_60007 chr15 63757443 63758633 + 0 NA Intergenic Intergenic -2123 ENSMUSG00000115682.1 ENSMUSG00000115682 ENSMUST00000226151 Gm46499 processed_pseudogene Interval_69676 chr16 95322095 95322468 + 0 NA intron (ENSMUSG00000116720.1, intron 1 of 1) antisense-intron (ENSMUSG00000116720.1, intron 1 of 1) -20620 ENSMUSG00000116716.1 ENSMUSG00000116716 ENSMUST00000232622 Gm49643 antisense Interval_121623 chr5 4010763 4011235 + 0 NA intron (ENSMUSG00000040407.18, intron 20 of 47) protein_coding-intron (ENSMUSG00000040407.18, intron 20 of 47) -12416 ENSMUSG00000040407.18 ENSMUSG00000040407 ENSMUST00000196837 Akap9 protein_coding Interval_95564 chr2 112339621 112340142 + 0 NA intron (ENSMUSG00000096764.1, intron 7 of 27) protein_coding-intron (ENSMUSG00000027130.15, intron 8 of 24) -14321 ENSMUSG00000027130.15 ENSMUSG00000027130 ENSMUST00000137896 Slc12a6 protein_coding Interval_94465 chr2 91411526 91411739 + 0 NA intron (ENSMUSG00000040591.18, intron 1 of 7) protein_coding-intron (ENSMUSG00000040591.18, intron 2 of 8) -4496 ENSMUSG00000080507.2 ENSMUSG00000080507 ENSMUST00000116857 Gm22071 miRNA Interval_80550 chr18 43843630 43843907 + 0 NA intron (ENSMUSG00000117902.1, intron 1 of 3) lincRNA-intron (ENSMUSG00000117902.1, intron 1 of 3) 3672 ENSMUSG00000117902.1 ENSMUSG00000117902 ENSMUST00000237459 Gm41715 lincRNA Interval_27298 chr11 65712909 65713495 + 0 NA intron (ENSMUSG00000033352.11, intron 5 of 5) protein_coding-intron (ENSMUSG00000033352.11, intron 4 of 10) 21630 ENSMUSG00000076460.1 ENSMUSG00000076460 ENSMUST00000103261 Mir744 miRNA Interval_1790 chr1 33799869 33800288 + 0 NA exon (ENSMUSG00000042197.13, exon 4 of 4) protein_coding-exon (ENSMUSG00000042197.13, exon 4 of 4) 14348 ENSMUSG00000042197.13 ENSMUSG00000042197 ENSMUST00000125723 Zfp451 protein_coding Interval_139202 chr6 97148015 97149461 + 0 NA promoter-TSS (ENSMUSG00000035245.12) protein_coding-promoter-TSS (ENSMUSG00000035245.12) 122 ENSMUSG00000035245.12 ENSMUSG00000035245 ENSMUST00000142116 Eogt protein_coding Interval_146566 chr7 46863637 46863978 + 0 NA intron (ENSMUSG00000030851.15, intron 2 of 4) protein_coding-intron (ENSMUSG00000030851.15, intron 2 of 7) 2521 ENSMUSG00000030851.15 ENSMUSG00000030851 ENSMUST00000126004 Ldhc protein_coding Interval_118256 chr4 129850660 129850929 + 0 NA TTS (ENSMUSG00000028788.14) protein_coding-TTS (ENSMUSG00000028788.14) -4277 ENSMUSG00000073753.4 ENSMUSG00000073753 ENSMUST00000097869 Gm10571 pseudogene Interval_63076 chr15 98981853 98982576 + 0 NA Intergenic Intergenic -1134 ENSMUSG00000097587.2 ENSMUSG00000097587 ENSMUST00000180490 4930578M01Rik processed_transcript Interval_101141 chr2 178420657 178421014 + 0 NA TTS (ENSMUSG00000070476.10) protein_coding-TTS (ENSMUSG00000070476.10) 6253 ENSMUSG00000070476.10 ENSMUSG00000070476 ENSMUST00000129003 Fam217b protein_coding Interval_24436 chr11 33243729 33244334 + 0 NA intron (ENSMUSG00000040594.19, intron 24 of 27) protein_coding-intron (ENSMUSG00000040594.19, intron 24 of 27) 32706 ENSMUSG00000098456.1 ENSMUSG00000098456 ENSMUST00000183831 Gm12117 protein_coding Interval_165710 chr9 51292274 51293372 + 0 NA intron (ENSMUSG00000036027.13, intron 3 of 4) protein_coding-intron (ENSMUSG00000036027.13, intron 3 of 4) -13172 ENSMUSG00000079559.5 ENSMUSG00000079559 ENSMUST00000239415 Colca2 protein_coding Interval_76727 chr17 83718196 83718958 + 0 NA intron (ENSMUSG00000055817.18, intron 2 of 16) protein_coding-intron (ENSMUSG00000055817.18, intron 3 of 16) -10587 ENSMUSG00000055817.18 ENSMUSG00000055817 ENSMUST00000175920 Mta3 protein_coding Interval_8846 chr1 151500135 151501405 + 0 NA promoter-TSS (ENSMUSG00000026484.13) protein_coding-promoter-TSS (ENSMUSG00000026484.13) -1185 ENSMUSG00000103238.1 ENSMUSG00000103238 ENSMUST00000195500 Gm36527 TEC Interval_158412 chr8 83583141 83584065 + 0 NA TTS (ENSMUSG00000110471.1) sense_intronic-TTS (ENSMUSG00000110471.1) 1922 ENSMUSG00000110471.1 ENSMUSG00000110471 ENSMUST00000212714 Gm45823 sense_intronic Interval_58815 chr15 38261244 38261617 + 0 NA Intergenic Intergenic -6120 ENSMUSG00000115307.1 ENSMUSG00000115307 ENSMUST00000227099 Gm49313 lincRNA Interval_165512 chr9 48898478 48899174 + 0 NA TTS (ENSMUSG00000032269.8) protein_coding-TTS (ENSMUSG00000032269.8) 2375 ENSMUSG00000111570.1 ENSMUSG00000111570 ENSMUST00000216896 Gm32335 antisense Interval_29879 chr11 87485886 87486248 + 0 NA intron (ENSMUSG00000010342.16, intron 4 of 30) protein_coding-intron (ENSMUSG00000010342.16, intron 4 of 30) 14699 ENSMUSG00000105115.1 ENSMUSG00000105115 ENSMUST00000196353 Rnu3b2 snoRNA Interval_118460 chr4 131798184 131800008 + 0 NA promoter-TSS (ENSMUSG00000028909.17) protein_coding-promoter-TSS (ENSMUSG00000028909.17) -726 ENSMUSG00000028909.17 ENSMUSG00000028909 ENSMUST00000139641 Ptpru protein_coding Interval_122338 chr5 21482430 21483278 + 0 NA TTS (ENSMUSG00000048520.16) protein_coding-TTS (ENSMUSG00000048520.16) 57853 ENSMUSG00000047221.5 ENSMUSG00000047221 ENSMUST00000146056 Fam185a protein_coding Interval_164812 chr9 42109833 42110543 + 0 NA intron (ENSMUSG00000049313.8, intron 1 of 47) protein_coding-intron (ENSMUSG00000049313.8, intron 1 of 47) -32173 ENSMUSG00000111167.1 ENSMUSG00000111167 ENSMUST00000217090 Gm39321 lincRNA Interval_73543 chr17 40183273 40183495 + 0 NA Intergenic Intergenic -4291 ENSMUSG00000117307.1 ENSMUSG00000117307 ENSMUST00000232831 Gm49837 processed_pseudogene Interval_80819 chr18 47537189 47537929 + 0 NA promoter-TSS (ENSMUSG00000118259.1) lincRNA-promoter-TSS (ENSMUSG00000118259.1) -176 ENSMUSG00000118259.1 ENSMUSG00000118259 ENSMUST00000236621 Gm5095 lincRNA Interval_133743 chr6 11036720 11037432 + 0 NA Intergenic Intergenic -62698 ENSMUSG00000107948.2 ENSMUSG00000107948 ENSMUST00000205141 AA545190 lincRNA Interval_59951 chr15 62173762 62173948 + 0 NA intron (ENSMUSG00000097039.8, intron 4 of 8) lincRNA-intron (ENSMUSG00000097039.8, intron 4 of 8) -1567 ENSMUSG00000098595.1 ENSMUSG00000098595 ENSMUST00000184054 Gm27957 misc_RNA Interval_134701 chr6 30495658 30496218 + 0 NA intron (ENSMUSG00000029782.20, intron 8 of 15) protein_coding-intron (ENSMUSG00000029782.20, intron 8 of 11) -3759 ENSMUSG00000029782.20 ENSMUSG00000029782 ENSMUST00000148638 Tmem209 protein_coding Interval_58546 chr15 35960607 35962345 + 0 NA Intergenic Intergenic -24307 ENSMUSG00000014313.15 ENSMUSG00000014313 ENSMUST00000227231 Cox6c protein_coding Interval_141268 chr6 126748241 126748659 + 0 NA Intergenic Intergenic -7776 ENSMUSG00000038077.7 ENSMUSG00000038077 ENSMUST00000112242 Kcna6 protein_coding Interval_49926 chr13 118378916 118379908 + 0 NA exon (ENSMUSG00000021731.10, exon 5 of 5) protein_coding-exon (ENSMUSG00000021731.10, exon 5 of 5) -7218 ENSMUSG00000097411.2 ENSMUSG00000097411 ENSMUST00000181168 B430218F22Rik antisense Interval_100687 chr2 171599132 171599307 + 0 NA Intergenic Intergenic -292788 ENSMUSG00000088505.1 ENSMUSG00000088505 ENSMUST00000157880 Gm26489 scaRNA Interval_96250 chr2 120973027 120973609 + 0 NA Intergenic Intergenic 4409 ENSMUSG00000105465.1 ENSMUSG00000105465 ENSMUST00000196757 Gm44325 miRNA Interval_15405 chr10 45614108 45614607 + 0 NA intron (ENSMUSG00000038822.15, intron 4 of 6) protein_coding-intron (ENSMUSG00000038822.15, intron 5 of 23) 33138 ENSMUSG00000111466.1 ENSMUSG00000111466 ENSMUST00000214524 Gm47504 processed_pseudogene Interval_159336 chr8 93813202 93813707 + 0 NA exon (ENSMUSG00000097520.2, exon 1 of 3) antisense-exon (ENSMUSG00000097520.2, exon 1 of 3) 268 ENSMUSG00000097520.2 ENSMUSG00000097520 ENSMUST00000212638 4930488L21Rik antisense Interval_74652 chr17 54353490 54353967 + 0 NA TTS (ENSMUSG00000117149.1) processed_pseudogene-TTS (ENSMUSG00000117149.1) 1431 ENSMUSG00000117149.1 ENSMUSG00000117149 ENSMUST00000233768 Gm49919 processed_pseudogene Interval_100442 chr2 169035488 169035788 + 0 NA Intergenic Intergenic 15613 ENSMUSG00000052368.2 ENSMUSG00000052368 ENSMUST00000063891 Gm9873 lincRNA Interval_75745 chr17 70977957 70978219 + 0 NA intron (ENSMUSG00000117098.1, intron 1 of 3) protein_coding-intron (ENSMUSG00000034868.9, intron 1 of 3) 444 ENSMUSG00000034868.9 ENSMUSG00000034868 ENSMUST00000131820 Myl12b protein_coding Interval_129090 chr5 117346348 117349173 + 0 NA intron (ENSMUSG00000066894.14, intron 5 of 8) protein_coding-intron (ENSMUSG00000066894.14, intron 5 of 8) 1583 ENSMUSG00000081274.2 ENSMUSG00000081274 ENSMUST00000122416 Gm15727 processed_pseudogene Interval_153300 chr7 143466253 143466738 + 0 NA Intergenic Intergenic -6333 ENSMUSG00000037664.13 ENSMUSG00000037664 ENSMUST00000208137 Cdkn1c protein_coding Interval_149060 chr7 92774848 92776306 + 0 NA intron (ENSMUSG00000030643.14, intron 1 of 3) protein_coding-intron (ENSMUSG00000030643.14, intron 1 of 4) -2006 ENSMUSG00000030643.14 ENSMUSG00000030643 ENSMUST00000107179 Rab30 protein_coding Interval_45219 chr13 53254679 53254976 + 0 NA intron (ENSMUSG00000021464.14, intron 1 of 8) protein_coding-intron (ENSMUSG00000021464.14, intron 1 of 8) 20831 ENSMUSG00000021464.14 ENSMUSG00000021464 ENSMUST00000149299 Ror2 protein_coding Interval_128818 chr5 115441526 115441861 + 0 NA intron (ENSMUSG00000054256.11, intron 9 of 10) protein_coding-intron (ENSMUSG00000054256.11, intron 8 of 13) -5049 ENSMUSG00000107353.1 ENSMUSG00000107353 ENSMUST00000202251 4930430O22Rik antisense Interval_130916 chr5 134042868 134043133 + 0 NA Intergenic Intergenic 48451 ENSMUSG00000106800.1 ENSMUSG00000106800 ENSMUST00000202497 1700030N18Rik TEC Interval_29742 chr11 86511093 86511456 + 0 NA intron (ENSMUSG00000020516.15, intron 12 of 14) protein_coding-intron (ENSMUSG00000020516.15, intron 12 of 14) 26544 ENSMUSG00000020521.7 ENSMUSG00000020521 ENSMUST00000131246 Rnft1 protein_coding Interval_27040 chr11 62508609 62509142 + 0 NA intron (ENSMUSG00000014245.8, intron 4 of 6) protein_coding-intron (ENSMUSG00000014245.8, intron 4 of 6) -13866 ENSMUSG00000086636.1 ENSMUSG00000086636 ENSMUST00000143382 Gm12949 antisense Interval_165821 chr9 53513696 53514516 + 0 NA intron (ENSMUSG00000034218.16, intron 11 of 63) protein_coding-intron (ENSMUSG00000034218.16, intron 10 of 61) 22634 ENSMUSG00000034218.16 ENSMUSG00000034218 ENSMUST00000150244 Atm protein_coding Interval_95960 chr2 118695614 118696631 + 0 NA intron (ENSMUSG00000074923.10, intron 7 of 7) protein_coding-intron (ENSMUSG00000074923.10, intron 10 of 10) 7841 ENSMUSG00000078137.1 ENSMUSG00000078137 ENSMUST00000104937 Ankrd63 protein_coding Interval_15643 chr10 52753628 52753969 + 0 NA intron (ENSMUSG00000038602.7, intron 1 of 7) protein_coding-intron (ENSMUSG00000038602.7, intron 1 of 7) -47695 ENSMUSG00000112257.1 ENSMUSG00000112257 ENSMUST00000218509 Gm47623 TEC Interval_136928 chr6 64665675 64666308 + 0 NA exon (ENSMUSG00000071424.10, exon 16 of 16) protein_coding-exon (ENSMUSG00000071424.10, exon 16 of 16) 2803 ENSMUSG00000071424.10 ENSMUSG00000071424 ENSMUST00000210324 Grid2 protein_coding Interval_61954 chr15 85464214 85465592 + 0 NA Intergenic Intergenic 38324 ENSMUSG00000096607.1 ENSMUSG00000096607 ENSMUST00000178942 7530416G11Rik protein_coding Interval_76615 chr17 82534998 82535214 + 0 NA Intergenic Intergenic -4154 ENSMUSG00000073371.4 ENSMUSG00000073371 ENSMUST00000097278 Gm6594 processed_pseudogene Interval_43179 chr13 24896432 24896751 + 0 NA intron (ENSMUSG00000006711.15, intron 2 of 2) protein_coding-intron (ENSMUSG00000006711.15, intron 20 of 20) 3510 ENSMUSG00000006711.15 ENSMUSG00000006711 ENSMUST00000171262 D130043K22Rik protein_coding Interval_87213 chr19 46961574 46963034 + 0 NA promoter-TSS (ENSMUSG00000025041.17) protein_coding-promoter-TSS (ENSMUSG00000025041.17) 4 ENSMUSG00000025041.17 ENSMUSG00000025041 ENSMUST00000237658 Nt5c2 protein_coding Interval_59320 chr15 51632053 51632275 + 0 NA Intergenic Intergenic -2529 ENSMUSG00000115563.1 ENSMUSG00000115563 ENSMUST00000227000 Gm34562 lincRNA Interval_33910 chr11 119362946 119364200 + 0 NA intron (ENSMUSG00000039908.14, intron 1 of 11) protein_coding-intron (ENSMUSG00000039908.14, intron 6 of 16) 924 ENSMUSG00000039908.14 ENSMUSG00000039908 ENSMUST00000151612 Slc26a11 protein_coding Interval_73248 chr17 35763861 35764370 + 0 NA promoter-TSS (ENSMUSG00000092600.1) lincRNA-promoter-TSS (ENSMUSG00000092600.1) 76 ENSMUSG00000092600.1 ENSMUSG00000092600 ENSMUST00000174630 Gm20442 lincRNA Interval_106344 chr3 95508140 95508348 + 0 NA intron (ENSMUSG00000028111.4, intron 7 of 7) protein_coding-intron (ENSMUSG00000028111.4, intron 7 of 7) 8988 ENSMUSG00000028111.4 ENSMUSG00000028111 ENSMUST00000015664 Ctsk protein_coding Interval_49429 chr13 111919110 111920151 + 0 NA Intergenic Intergenic -35453 ENSMUSG00000082433.2 ENSMUSG00000082433 ENSMUST00000122415 Gm9025 processed_pseudogene Interval_86739 chr19 43510585 43511013 + 0 NA intron (ENSMUSG00000025190.13, intron 1 of 6) protein_coding-intron (ENSMUSG00000025190.13, intron 2 of 8) 5066 ENSMUSG00000025190.13 ENSMUSG00000025190 ENSMUST00000124954 Got1 protein_coding Interval_128250 chr5 112053018 112054718 + 0 NA Intergenic Intergenic -102369 ENSMUSG00000104538.1 ENSMUSG00000104538 ENSMUST00000197688 1700016B01Rik lincRNA Interval_83725 chr19 3972275 3973314 + 0 NA TTS (ENSMUSG00000037263.13) protein_coding-TTS (ENSMUSG00000037263.13) 466 ENSMUSG00000075296.5 ENSMUSG00000075296 ENSMUST00000143380 Aldh3b2 protein_coding Interval_28924 chr11 79291937 79292153 + 0 NA Intergenic Intergenic 4861 ENSMUSG00000055072.2 ENSMUSG00000055072 ENSMUST00000068448 Gm9964 TEC Interval_164637 chr9 40223941 40224544 + 0 NA Intergenic Intergenic 31913 ENSMUSG00000025602.13 ENSMUSG00000025602 ENSMUST00000168832 Zfp202 protein_coding Interval_138299 chr6 87030548 87031250 + 0 NA Intergenic Intergenic -11951 ENSMUSG00000029992.14 ENSMUSG00000029992 ENSMUST00000146410 Gfpt1 protein_coding Interval_167329 chr9 67428996 67429212 + 0 NA promoter-TSS (ENSMUSG00000052698.15) protein_coding-promoter-TSS (ENSMUSG00000052698.15) 4601 ENSMUSG00000111412.1 ENSMUSG00000111412 ENSMUST00000216972 Gm47047 antisense Interval_103057 chr3 34766966 34767336 + 0 NA Intergenic Intergenic -4924 ENSMUSG00000106519.1 ENSMUSG00000106519 ENSMUST00000197492 Gm38509 lincRNA Interval_46958 chr13 73742160 73743176 + 0 NA intron (ENSMUSG00000017756.9, intron 1 of 10) protein_coding-intron (ENSMUSG00000017756.9, intron 1 of 10) 38952 ENSMUSG00000021566.7 ENSMUSG00000021566 ENSMUST00000160958 Slc6a19os antisense Interval_93203 chr2 71139828 71141002 + 0 NA exon (ENSMUSG00000027015.4, exon 4 of 4) protein_coding-exon (ENSMUSG00000027015.4, exon 4 of 4) 22492 ENSMUSG00000027015.4 ENSMUSG00000027015 ENSMUST00000028403 Cybrd1 protein_coding Interval_5443 chr1 88809718 88810167 + 0 NA Intergenic Intergenic 55052 ENSMUSG00000097398.2 ENSMUSG00000097398 ENSMUST00000180596 Platr5 lincRNA Interval_137207 chr6 70052966 70053872 + 0 NA Intergenic Intergenic 5780 ENSMUSG00000076575.6 ENSMUSG00000076575 ENSMUST00000103376 Igkv7-33 IG_V_gene Interval_2739 chr1 44053827 44054053 + 0 NA Intergenic Intergenic 25806 ENSMUSG00000091844.2 ENSMUSG00000091844 ENSMUST00000168641 Gm8251 protein_coding Interval_50149 chr14 8294785 8295154 + 0 NA Intergenic Intergenic 14826 ENSMUSG00000021750.16 ENSMUSG00000021750 ENSMUST00000137133 Fam107a protein_coding Interval_92847 chr2 66429231 66430295 + 0 NA intron (ENSMUSG00000064329.13, intron 1 of 10) protein_coding-intron (ENSMUSG00000064329.13, intron 1 of 26) -11133 ENSMUSG00000087301.7 ENSMUSG00000087301 ENSMUST00000152740 Gm13629 antisense Interval_120579 chr4 149497526 149497877 + 0 NA Intergenic Intergenic -2932 ENSMUSG00000083811.1 ENSMUSG00000083811 ENSMUST00000122237 Gm13071 processed_pseudogene Interval_108325 chr3 123853618 123853816 + 0 NA Intergenic Intergenic 92390 ENSMUSG00000080842.2 ENSMUSG00000080842 ENSMUST00000118944 Gm15400 processed_pseudogene Interval_165859 chr9 53881382 53881588 + 0 NA Intergenic Intergenic -2599 ENSMUSG00000059830.3 ENSMUSG00000059830 ENSMUST00000077997 Gm16380 processed_pseudogene Interval_36849 chr12 54668665 54670087 + 0 NA TTS (ENSMUSG00000054302.15) protein_coding-TTS (ENSMUSG00000054302.15) -2590 ENSMUSG00000093322.1 ENSMUSG00000093322 ENSMUST00000175581 Gm24971 rRNA Interval_8084 chr1 135631515 135632730 + 0 NA intron (ENSMUSG00000009418.16, intron 1 of 30) protein_coding-intron (ENSMUSG00000009418.16, intron 1 of 1) 47349 ENSMUSG00000054412.5 ENSMUSG00000054412 ENSMUST00000067468 Gm4793 antisense Interval_16486 chr10 63142971 63143803 + 0 NA intron (ENSMUSG00000020067.8, intron 10 of 19) protein_coding-intron (ENSMUSG00000020067.8, intron 10 of 19) -20703 ENSMUSG00000020067.8 ENSMUSG00000020067 ENSMUST00000218978 Mypn protein_coding Interval_101696 chr3 8992748 8993788 + 0 NA intron (ENSMUSG00000027506.15, intron 1 of 3) protein_coding-intron (ENSMUSG00000027506.15, intron 1 of 6) 11210 ENSMUSG00000027506.15 ENSMUSG00000027506 ENSMUST00000155450 Tpd52 protein_coding Interval_92298 chr2 58522328 58522628 + 0 NA intron (ENSMUSG00000026836.15, intron 2 of 11) protein_coding-intron (ENSMUSG00000026836.15, intron 2 of 10) -6206 ENSMUSG00000026836.15 ENSMUSG00000026836 ENSMUST00000126407 Acvr1 protein_coding Interval_133964 chr6 16864185 16864906 + 0 NA intron (ENSMUSG00000029553.10, intron 2 of 5) protein_coding-intron (ENSMUSG00000029553.10, intron 2 of 6) 33854 ENSMUSG00000029553.10 ENSMUSG00000029553 ENSMUST00000200984 Tfec protein_coding Interval_77519 chr17 90631336 90632049 + 0 NA intron (ENSMUSG00000024109.18, intron 8 of 20) protein_coding-intron (ENSMUSG00000024109.18, intron 7 of 20) -63935 ENSMUSG00000093716.1 ENSMUSG00000093716 ENSMUST00000175818 Gm19815 processed_pseudogene Interval_73524 chr17 39067456 39067899 + 0 NA Intergenic Intergenic 9360 ENSMUSG00000096697.1 ENSMUSG00000096697 ENSMUST00000178532 Esp23 protein_coding Interval_85156 chr19 23200049 23200501 + 0 NA Intergenic Intergenic 50844 ENSMUSG00000080626.1 ENSMUSG00000080626 ENSMUST00000116976 Mir1192 miRNA Interval_97808 chr2 144198366 144199524 + 0 NA intron (ENSMUSG00000074758.10, intron 2 of 2) lincRNA-intron (ENSMUSG00000074758.10, intron 2 of 2) -7894 ENSMUSG00000074758.10 ENSMUSG00000074758 ENSMUST00000209482 Gm5535 lincRNA Interval_43422 chr13 30585907 30586339 + 0 NA Intergenic Intergenic -28920 ENSMUSG00000086263.1 ENSMUSG00000086263 ENSMUST00000151471 4930519D14Rik lincRNA Interval_132330 chr5 144222947 144224181 + 0 NA promoter-TSS (ENSMUSG00000066621.12) protein_coding-promoter-TSS (ENSMUSG00000066621.12) -41 ENSMUSG00000066621.12 ENSMUSG00000066621 ENSMUST00000196360 Tecpr1 protein_coding Interval_30155 chr11 89977968 89979086 + 0 NA Intergenic Intergenic 24367 ENSMUSG00000020553.8 ENSMUSG00000020553 ENSMUST00000020864 Pctp protein_coding Interval_135568 chr6 40487167 40487452 + 0 NA Intergenic Intergenic -3924 ENSMUSG00000052850.5 ENSMUSG00000052850 ENSMUST00000064932 Tas2r137 protein_coding Interval_94357 chr2 90474751 90475558 + 0 NA intron (ENSMUSG00000025314.16, intron 1 of 23) protein_coding-intron (ENSMUSG00000025314.16, intron 1 of 25) -4096 ENSMUSG00000085471.1 ENSMUSG00000085471 ENSMUST00000126953 4933423P22Rik antisense Interval_20502 chr10 118001308 118002538 + 0 NA Intergenic Intergenic -3015 ENSMUSG00000102896.1 ENSMUSG00000102896 ENSMUST00000193027 Gm37852 TEC Interval_19024 chr10 93864816 93865102 + 0 NA promoter-TSS (ENSMUSG00000036112.15) protein_coding-promoter-TSS (ENSMUSG00000036112.15) 22527 ENSMUSG00000036112.15 ENSMUSG00000036112 ENSMUST00000181434 Metap2 protein_coding Interval_14731 chr10 39426122 39427531 + 0 NA intron (ENSMUSG00000019843.14, intron 1 of 2) protein_coding-intron (ENSMUSG00000019843.14, intron 2 of 13) -1830 ENSMUSG00000085799.1 ENSMUSG00000085799 ENSMUST00000147879 Gm6963 processed_pseudogene Interval_74706 chr17 56078758 56080056 + 0 NA promoter-TSS (ENSMUSG00000002833.11) protein_coding-promoter-TSS (ENSMUSG00000002833.11) -227 ENSMUSG00000002833.11 ENSMUSG00000002833 ENSMUST00000225731 Hdgfl2 protein_coding Interval_63481 chr15 101352148 101352331 + 0 NA promoter-TSS (ENSMUSG00000116114.1) antisense-promoter-TSS (ENSMUSG00000116114.1) 12339 ENSMUSG00000037185.9 ENSMUSG00000037185 ENSMUST00000229267 Krt80 protein_coding Interval_121559 chr5 3437294 3439340 + 0 NA intron (ENSMUSG00000040274.11, intron 4 of 7) protein_coding-intron (ENSMUSG00000040274.11, intron 3 of 6) -32632 ENSMUSG00000040274.11 ENSMUSG00000040274 ENSMUST00000199396 Cdk6 protein_coding Interval_87288 chr19 47397933 47398627 + 0 NA intron (ENSMUSG00000053617.12, intron 2 of 13) protein_coding-intron (ENSMUSG00000053617.12, intron 2 of 14) 12079 ENSMUSG00000053617.12 ENSMUSG00000053617 ENSMUST00000237828 Sh3pxd2a protein_coding Interval_134643 chr6 30118401 30118643 + 0 NA intron (ENSMUSG00000058440.14, intron 7 of 8) protein_coding-intron (ENSMUSG00000058440.14, intron 7 of 9) 25605 ENSMUSG00000065343.1 ENSMUSG00000065343 ENSMUST00000083409 Gm25580 misc_RNA Interval_162281 chr8 126727052 126727267 + 0 NA Intergenic Intergenic 31175 ENSMUSG00000110626.1 ENSMUSG00000110626 ENSMUST00000212695 Gm45805 lincRNA Interval_32333 chr11 107022422 107022704 + 0 NA Intergenic Intergenic -5660 ENSMUSG00000078607.6 ENSMUSG00000078607 ENSMUST00000106767 1810010H24Rik protein_coding Interval_73942 chr17 45599571 45599976 + 0 NA promoter-TSS (ENSMUSG00000023942.15) protein_coding-promoter-TSS (ENSMUSG00000023942.15) 2197 ENSMUSG00000079471.4 ENSMUSG00000079471 ENSMUST00000208801 Mymx protein_coding Interval_58731 chr15 37437052 37437359 + 0 NA intron (ENSMUSG00000115157.1, intron 7 of 7) protein_coding-intron (ENSMUSG00000022288.1, intron 2 of 3) -5057 ENSMUSG00000086992.7 ENSMUSG00000086992 ENSMUST00000128804 Gm15941 antisense Interval_89207 chr2 18049247 18049844 + 0 NA promoter-TSS (ENSMUSG00000054074.9) protein_coding-promoter-TSS (ENSMUSG00000054074.9) -4973 ENSMUSG00000054074.9 ENSMUSG00000054074 ENSMUST00000152908 Skida1 protein_coding Interval_60491 chr15 74341870 74342410 + 0 NA Intergenic Intergenic 98304 ENSMUSG00000118581.1 ENSMUSG00000118581 ENSMUST00000239328 AC119183.1 unitary_pseudogene Interval_85907 chr19 32909811 32910408 + 0 NA Intergenic Intergenic 60199 ENSMUSG00000084512.1 ENSMUSG00000084512 ENSMUST00000122563 Gm22482 misc_RNA Interval_2178 chr1 36883189 36884861 + 0 NA intron (ENSMUSG00000026116.11, intron 3 of 41) protein_coding-intron (ENSMUSG00000026116.11, intron 2 of 40) -11980 ENSMUSG00000103016.1 ENSMUSG00000103016 ENSMUST00000192008 Gm37506 TEC Interval_41416 chr12 113597242 113597626 + 0 NA TTS (ENSMUSG00000095612.2) IG_V_gene-TTS (ENSMUSG00000095612.2) 543 ENSMUSG00000095612.2 ENSMUSG00000095612 ENSMUST00000103444 Ighv5-4 IG_V_gene Interval_102743 chr3 30724187 30725756 + 0 NA Intergenic Intergenic -25203 ENSMUSG00000074653.10 ENSMUSG00000074653 ENSMUST00000130731 Lrrc31 protein_coding Interval_78257 chr18 10865729 10866861 + 0 NA Intergenic Intergenic 6615 ENSMUSG00000117593.1 ENSMUSG00000117593 ENSMUST00000235066 Gm18764 processed_pseudogene Interval_49323 chr13 110800104 110800517 + 0 NA Intergenic Intergenic 42811 ENSMUSG00000114587.1 ENSMUSG00000114587 ENSMUST00000225026 Gm48533 processed_pseudogene Interval_149886 chr7 102239408 102240190 + 0 NA TTS (ENSMUSG00000073982.11) protein_coding-TTS (ENSMUSG00000073982.11) 3945 ENSMUSG00000111339.1 ENSMUSG00000111339 ENSMUST00000214560 AC139579.1 processed_transcript Interval_152501 chr7 133603643 133605462 + 0 NA promoter-TSS (ENSMUSG00000110026.1) lincRNA-promoter-TSS (ENSMUSG00000110026.1) -941 ENSMUSG00000110026.1 ENSMUSG00000110026 ENSMUST00000210416 Gm35625 lincRNA Interval_48939 chr13 105227140 105227481 + 0 NA intron (ENSMUSG00000021720.11, intron 5 of 7) protein_coding-intron (ENSMUSG00000021720.11, intron 4 of 6) -3912 ENSMUSG00000077578.1 ENSMUSG00000077578 ENSMUST00000104390 Gm25631 snoRNA Interval_145705 chr7 37548545 37549179 + 0 NA intron (ENSMUSG00000043456.17, intron 1 of 3) protein_coding-intron (ENSMUSG00000043456.17, intron 4 of 5) 19528 ENSMUSG00000043456.17 ENSMUSG00000043456 ENSMUST00000206332 Zfp536 protein_coding Interval_40404 chr12 104667481 104668313 + 0 NA Intergenic Intergenic 54155 ENSMUSG00000041415.10 ENSMUSG00000041415 ENSMUST00000222002 Dicer1 protein_coding Interval_22650 chr11 12489631 12491100 + 0 NA Intergenic Intergenic -78221 ENSMUSG00000020173.17 ENSMUSG00000020173 ENSMUST00000146067 Cobl protein_coding Interval_37077 chr12 57478397 57478772 + 0 NA intron (ENSMUSG00000047022.18, intron 11 of 11) protein_coding-intron (ENSMUSG00000047022.18, intron 10 of 10) -28464 ENSMUSG00000086372.1 ENSMUSG00000086372 ENSMUST00000145464 Gm16246 antisense Interval_19817 chr10 109607164 109607384 + 0 NA Intergenic Intergenic -41505 ENSMUSG00000112260.1 ENSMUSG00000112260 ENSMUST00000219153 3110043J17Rik TEC Interval_46831 chr13 71879153 71880253 + 0 NA intron (ENSMUSG00000114038.1, intron 1 of 7) processed_transcript-intron (ENSMUSG00000114038.1, intron 1 of 7) 81013 ENSMUSG00000060969.9 ENSMUSG00000060969 ENSMUST00000223460 Irx1 protein_coding Interval_126225 chr5 83282149 83282550 + 0 NA intron (ENSMUSG00000049537.10, intron 9 of 11) protein_coding-intron (ENSMUSG00000049537.10, intron 9 of 11) 18103 ENSMUSG00000081822.1 ENSMUSG00000081822 ENSMUST00000117478 Gm15626 processed_pseudogene Interval_67523 chr16 50201052 50202148 + 0 NA intron (ENSMUSG00000022641.15, intron 15 of 16) protein_coding-intron (ENSMUSG00000022641.15, intron 14 of 15) 90527 ENSMUSG00000098028.1 ENSMUSG00000098028 ENSMUST00000182962 Gm8824 processed_pseudogene Interval_90300 chr2 29653140 29653833 + 0 NA intron (ENSMUSG00000039844.20, intron 1 of 23) protein_coding-intron (ENSMUSG00000039844.20, intron 1 of 25) 9671 ENSMUSG00000039844.20 ENSMUSG00000039844 ENSMUST00000123953 Rapgef1 protein_coding Interval_81963 chr18 66457642 66459303 + 0 NA promoter-TSS (ENSMUSG00000024521.8) protein_coding-promoter-TSS (ENSMUSG00000024521.8) -103 ENSMUSG00000024521.8 ENSMUSG00000024521 ENSMUST00000236933 Pmaip1 protein_coding Interval_172308 chrX 12839444 12840892 + 0 NA Intergenic Intergenic 30194 ENSMUSG00000077858.1 ENSMUSG00000077858 ENSMUST00000104666 Gm25063 miRNA Interval_124254 chr5 42726280 42726745 + 0 NA Intergenic Intergenic -226098 ENSMUSG00000106813.1 ENSMUSG00000106813 ENSMUST00000202197 Gm7181 processed_pseudogene Interval_137230 chr6 70518214 70518941 + 0 NA exon (ENSMUSG00000094117.1, exon 2 of 2) IG_V_gene-exon (ENSMUSG00000094117.1, exon 2 of 2) 327 ENSMUSG00000094117.1 ENSMUSG00000094117 ENSMUST00000103396 Igkv3-12 IG_V_gene Interval_59175 chr15 46328462 46328857 + 0 NA intron (ENSMUSG00000099751.6, intron 2 of 6) lincRNA-intron (ENSMUSG00000099751.6, intron 1 of 3) 4074 ENSMUSG00000099751.6 ENSMUSG00000099751 ENSMUST00000189172 1700022A22Rik lincRNA Interval_131501 chr5 137600332 137601598 + 0 NA promoter-TSS (ENSMUSG00000037221.13) protein_coding-promoter-TSS (ENSMUSG00000037221.13) -274 ENSMUSG00000037221.13 ENSMUSG00000037221 ENSMUST00000196366 Mospd3 protein_coding Interval_76806 chr17 84197968 84198398 + 0 NA intron (ENSMUSG00000024251.10, intron 11 of 12) protein_coding-intron (ENSMUSG00000024251.10, intron 36 of 37) -10236 ENSMUSG00000045817.8 ENSMUSG00000045817 ENSMUST00000060366 Zfp36l2 protein_coding Interval_17582 chr10 77925798 77926670 + 0 NA intron (ENSMUSG00000009292.18, intron 4 of 15) protein_coding-intron (ENSMUSG00000009292.18, intron 19 of 31) -12383 ENSMUSG00000093443.1 ENSMUSG00000093443 ENSMUST00000177097 Gm22871 snoRNA Interval_137424 chr6 72179768 72179961 + 0 NA Intergenic Intergenic 17015 ENSMUSG00000108371.1 ENSMUSG00000108371 ENSMUST00000205674 Gm38832 lincRNA Interval_92034 chr2 52762814 52763413 + 0 NA Intergenic Intergenic -20923 ENSMUSG00000055371.17 ENSMUSG00000055371 ENSMUST00000138290 Stam2 protein_coding Interval_113927 chr4 59901546 59902787 + 0 NA exon (ENSMUSG00000028385.14, exon 9 of 9) protein_coding-exon (ENSMUSG00000028385.14, exon 9 of 9) -7242 ENSMUSG00000073843.3 ENSMUSG00000073843 ENSMUST00000133015 Gm12542 antisense Interval_163733 chr9 25027245 25028494 + 0 NA Intergenic Intergenic -29181 ENSMUSG00000111751.1 ENSMUSG00000111751 ENSMUST00000215876 Gm48256 lincRNA Interval_100191 chr2 167555267 167555765 + 0 NA intron (ENSMUSG00000085596.1, intron 1 of 3) processed_transcript-intron (ENSMUSG00000085596.1, intron 1 of 3) 2202 ENSMUSG00000085596.1 ENSMUSG00000085596 ENSMUST00000127006 Gm11476 processed_transcript Interval_129944 chr5 123227768 123228710 + 0 NA promoter-TSS (ENSMUSG00000029440.15) protein_coding-promoter-TSS (ENSMUSG00000029440.15) -708 ENSMUSG00000029440.15 ENSMUSG00000029440 ENSMUST00000198183 Psmd9 protein_coding Interval_94594 chr2 92496161 92496564 + 0 NA intron (ENSMUSG00000085261.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000085261.1, intron 1 of 1) 12436 ENSMUSG00000085261.1 ENSMUSG00000085261 ENSMUST00000141341 Gm13814 lincRNA Interval_144911 chr7 28888434 28889310 + 0 NA promoter-TSS (ENSMUSG00000109307.1) antisense-promoter-TSS (ENSMUSG00000109307.1) -389 ENSMUSG00000109307.1 ENSMUSG00000109307 ENSMUST00000208228 Gm44700 antisense Interval_91386 chr2 38438906 38439265 + 0 NA intron (ENSMUSG00000085950.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000085950.1, intron 1 of 1) 15083 ENSMUSG00000085950.1 ENSMUSG00000085950 ENSMUST00000146404 Gm13589 lincRNA Interval_60374 chr15 73228190 73229963 + 0 NA intron (ENSMUSG00000022607.18, intron 29 of 34) protein_coding-intron (ENSMUSG00000022607.18, intron 26 of 31) -20470 ENSMUSG00000115693.1 ENSMUSG00000115693 ENSMUST00000228696 1700085D07Rik antisense Interval_48099 chr13 95997437 95997660 + 0 NA intron (ENSMUSG00000051111.16, intron 3 of 10) protein_coding-intron (ENSMUSG00000051111.16, intron 4 of 12) -7322 ENSMUSG00000051111.16 ENSMUSG00000051111 ENSMUST00000220740 Sv2c protein_coding Interval_43785 chr13 36433095 36433286 + 0 NA intron (ENSMUSG00000021420.13, intron 6 of 7) protein_coding-intron (ENSMUSG00000021420.13, intron 6 of 6) 26090 ENSMUSG00000114714.1 ENSMUSG00000114714 ENSMUST00000224213 Gm48763 TEC Interval_108759 chr3 131102068 131102728 + 0 NA Intergenic Intergenic 9692 ENSMUSG00000106086.1 ENSMUSG00000106086 ENSMUST00000196419 Lef1os1 antisense Interval_54233 chr14 66687728 66688738 + 0 NA intron (ENSMUSG00000045875.13, intron 2 of 2) protein_coding-intron (ENSMUSG00000045875.13, intron 2 of 3) 52902 ENSMUSG00000045875.13 ENSMUSG00000045875 ENSMUST00000161339 Adra1a protein_coding Interval_72272 chr17 28904492 28905754 + 0 NA promoter-TSS (ENSMUSG00000085333.1) antisense-promoter-TSS (ENSMUSG00000085333.1) -142 ENSMUSG00000085333.1 ENSMUSG00000085333 ENSMUST00000125317 1700030A11Rik antisense Interval_70699 chr17 13667346 13667555 + 0 NA intron (ENSMUSG00000117042.1, intron 1 of 5) lincRNA-intron (ENSMUSG00000117063.1, intron 1 of 4) 1441 ENSMUSG00000117042.1 ENSMUSG00000117042 ENSMUST00000185626 2700054A10Rik lincRNA Interval_36581 chr12 50789818 50790155 + 0 NA intron (ENSMUSG00000112372.1, intron 3 of 8) lincRNA-intron (ENSMUSG00000112372.1, intron 3 of 8) 36889 ENSMUSG00000112372.1 ENSMUSG00000112372 ENSMUST00000220240 Gm48779 lincRNA Interval_80279 chr18 38760024 38760255 + 0 NA intron (ENSMUSG00000118257.1, intron 2 of 2) lincRNA-intron (ENSMUSG00000118257.1, intron 3 of 3) 12208 ENSMUSG00000081773.1 ENSMUSG00000081773 ENSMUST00000119217 Gm8302 processed_pseudogene Interval_94871 chr2 98791870 98792074 + 0 NA Intergenic Intergenic -124671 ENSMUSG00000075014.1 ENSMUSG00000075014 ENSMUST00000099683 Gm10800 protein_coding Interval_68911 chr16 88484068 88484278 + 0 NA Intergenic Intergenic 22805 ENSMUSG00000055811.2 ENSMUSG00000055811 ENSMUST00000069549 Cldn17 protein_coding Interval_10557 chr1 171821424 171821780 + 0 NA Intergenic Intergenic -18095 ENSMUSG00000038147.13 ENSMUSG00000038147 ENSMUST00000042302 Cd84 protein_coding Interval_170139 chr9 105457518 105457776 + 0 NA intron (ENSMUSG00000032570.17, intron 2 of 23) protein_coding-intron (ENSMUSG00000032570.17, intron 8 of 27) -12873 ENSMUSG00000099373.1 ENSMUSG00000099373 ENSMUST00000188984 Gm19667 antisense Interval_106396 chr3 95904662 95906782 + 0 NA Intergenic Intergenic -1038 ENSMUSG00000038526.14 ENSMUSG00000038526 ENSMUST00000126722 Car14 protein_coding Interval_165432 chr9 47847933 47849103 + 0 NA intron (ENSMUSG00000032076.20, intron 8 of 8) protein_coding-intron (ENSMUSG00000032076.20, intron 8 of 8) -71781 ENSMUSG00000111155.1 ENSMUSG00000111155 ENSMUST00000216522 Gm47197 TEC Interval_116189 chr4 108536076 108536571 + 0 NA intron (ENSMUSG00000034610.14, intron 20 of 29) protein_coding-intron (ENSMUSG00000034610.14, intron 21 of 30) 1274 ENSMUSG00000084593.1 ENSMUSG00000084593 ENSMUST00000122644 Gm22345 snRNA Interval_172369 chrX 14490139 14490389 + 0 NA Intergenic Intergenic -174673 ENSMUSG00000064772.1 ENSMUSG00000064772 ENSMUST00000082838 Gm25202 snRNA Interval_113671 chr4 57447113 57448008 + 0 NA intron (ENSMUSG00000090053.9, intron 1 of 6) protein_coding-intron (ENSMUSG00000090053.9, intron 1 of 6) 9989 ENSMUSG00000081615.1 ENSMUSG00000081615 ENSMUST00000121549 Gm12539 processed_pseudogene Interval_166084 chr9 56499643 56499840 + 0 NA Intergenic Intergenic 6920 ENSMUSG00000111343.1 ENSMUSG00000111343 ENSMUST00000216940 Gm47175 TEC Interval_116004 chr4 106910269 106912595 + 0 NA promoter-TSS (ENSMUSG00000061887.14) protein_coding-promoter-TSS (ENSMUSG00000061887.14) -63512 ENSMUSG00000086940.1 ENSMUSG00000086940 ENSMUST00000151369 Gm12746 lincRNA Interval_7478 chr1 131714872 131715731 + 0 NA exon (ENSMUSG00000052688.12, exon 6 of 6) protein_coding-exon (ENSMUSG00000052688.12, exon 6 of 6) 26563 ENSMUSG00000052688.12 ENSMUSG00000052688 ENSMUST00000130848 Rab7b protein_coding Interval_127369 chr5 103456441 103456716 + 0 NA intron (ENSMUSG00000034573.14, intron 1 of 17) protein_coding-intron (ENSMUSG00000034573.14, intron 1 of 47) -72988 ENSMUSG00000034573.14 ENSMUSG00000034573 ENSMUST00000200581 Ptpn13 protein_coding Interval_134025 chr6 17816953 17817274 + 0 NA intron (ENSMUSG00000029534.17, intron 1 of 15) protein_coding-intron (ENSMUSG00000029534.17, intron 1 of 14) 18072 ENSMUSG00000097700.1 ENSMUSG00000097700 ENSMUST00000181312 Gm26738 antisense Interval_112881 chr4 45769711 45772034 + 0 NA Intergenic Intergenic 6337 ENSMUSG00000083685.1 ENSMUSG00000083685 ENSMUST00000121867 Gm12412 processed_pseudogene Interval_110178 chr3 153979848 153981189 + 0 NA intron (ENSMUSG00000028360.10, intron 1 of 21) protein_coding-intron (ENSMUSG00000028360.10, intron 1 of 21) -42709 ENSMUSG00000062908.12 ENSMUSG00000062908 ENSMUST00000135724 Acadm protein_coding Interval_119407 chr4 137503457 137503866 + 0 NA intron (ENSMUSG00000028763.18, intron 3 of 96) protein_coding-intron (ENSMUSG00000028763.18, intron 3 of 96) -18798 ENSMUSG00000028763.18 ENSMUSG00000028763 ENSMUST00000155648 Hspg2 protein_coding Interval_88377 chr2 4559239 4560107 + 0 NA promoter-TSS (ENSMUSG00000026657.17) protein_coding-promoter-TSS (ENSMUSG00000026657.17) 27614 ENSMUSG00000086018.7 ENSMUSG00000086018 ENSMUST00000137801 Gm13179 antisense Interval_44864 chr13 49181136 49181727 + 0 NA Intergenic Intergenic -8865 ENSMUSG00000037966.15 ENSMUSG00000037966 ENSMUST00000153819 Ninj1 protein_coding Interval_39859 chr12 99162138 99163354 + 0 NA promoter-TSS (ENSMUSG00000113210.1) lincRNA-promoter-TSS (ENSMUSG00000113210.1) 62 ENSMUSG00000113210.1 ENSMUSG00000113210 ENSMUST00000223511 4930474N09Rik lincRNA Interval_35386 chr12 21227329 21227957 + 0 NA intron (ENSMUSG00000052632.16, intron 13 of 27) protein_coding-intron (ENSMUSG00000052632.16, intron 12 of 26) 19680 ENSMUSG00000118655.1 ENSMUSG00000118655 ENSMUST00000172962 AC156032.1 processed_transcript Interval_34731 chr12 9020242 9020838 + 0 NA intron (ENSMUSG00000066643.12, intron 22 of 22) protein_coding-intron (ENSMUSG00000066643.12, intron 22 of 27) -9487 ENSMUSG00000066637.2 ENSMUSG00000066637 ENSMUST00000219470 Ttc32 protein_coding Interval_138738 chr6 91532694 91534066 + 0 NA Intergenic Intergenic 10971 ENSMUSG00000108584.1 ENSMUSG00000108584 ENSMUST00000205547 Gm45216 sense_overlapping Interval_21694 chr11 3749896 3750316 + 0 NA intron (ENSMUSG00000020435.17, intron 2 of 2) protein_coding-intron (ENSMUSG00000020435.17, intron 2 of 13) 24626 ENSMUSG00000020435.17 ENSMUSG00000020435 ENSMUST00000135250 Osbp2 protein_coding Interval_14802 chr10 40010269 40011878 + 0 NA promoter-TSS (ENSMUSG00000096171.1) processed_pseudogene-promoter-TSS (ENSMUSG00000096171.1) -793 ENSMUSG00000096171.1 ENSMUSG00000096171 ENSMUST00000099956 Gm8055 processed_pseudogene Interval_98165 chr2 149016404 149017232 + 0 NA exon (ENSMUSG00000074739.2, exon 1 of 1) TEC-exon (ENSMUSG00000074739.2, exon 1 of 1) 419 ENSMUSG00000074739.2 ENSMUSG00000074739 ENSMUST00000099266 Gm10750 TEC Interval_95390 chr2 107817286 107817744 + 0 NA Intergenic Intergenic 69124 ENSMUSG00000077480.1 ENSMUSG00000077480 ENSMUST00000104292 Gm23439 snoRNA Interval_117748 chr4 125992061 125993526 + 0 NA Intergenic Intergenic -31933 ENSMUSG00000028859.14 ENSMUSG00000028859 ENSMUST00000140426 Csf3r protein_coding Interval_36287 chr12 40746546 40746765 + 0 NA intron (ENSMUSG00000035954.10, intron 24 of 31) protein_coding-intron (ENSMUSG00000035954.10, intron 24 of 52) -128882 ENSMUSG00000113435.1 ENSMUSG00000113435 ENSMUST00000221545 Gm19441 processed_pseudogene Interval_105687 chr3 88575402 88575970 + 0 NA promoter-TSS (ENSMUSG00000041355.13) protein_coding-promoter-TSS (ENSMUSG00000041355.13) 1453 ENSMUSG00000074479.3 ENSMUSG00000074479 ENSMUST00000098952 Rtraf-ps processed_pseudogene Interval_1864 chr1 34200077 34200299 + 0 NA intron (ENSMUSG00000026131.20, intron 28 of 83) protein_coding-intron (ENSMUSG00000026131.20, intron 43 of 97) -21742 ENSMUSG00000096992.3 ENSMUSG00000096992 ENSMUST00000187268 Gm26788 processed_transcript Interval_51811 chr14 32372284 32372687 + 0 NA Intergenic Intergenic 15906 ENSMUSG00000072473.4 ENSMUSG00000072473 ENSMUST00000100723 1700024G13Rik protein_coding Interval_160613 chr8 111048455 111049056 + 0 NA intron (ENSMUSG00000031960.14, intron 1 of 1) protein_coding-intron (ENSMUSG00000031960.14, intron 13 of 20) -6731 ENSMUSG00000092671.1 ENSMUSG00000092671 ENSMUST00000174930 Gm24103 miRNA Interval_80931 chr18 50406430 50406697 + 0 NA Intergenic Intergenic 128194 ENSMUSG00000035420.7 ENSMUSG00000035420 ENSMUST00000238078 Fam170a protein_coding Interval_119848 chr4 140482567 140483153 + 0 NA Intergenic Intergenic -36696 ENSMUSG00000118416.1 ENSMUSG00000118416 ENSMUST00000238366 Gm50453 unitary_pseudogene Interval_20318 chr10 116860180 116860383 + 0 NA intron (ENSMUSG00000034057.8, intron 2 of 24) protein_coding-intron (ENSMUSG00000034057.8, intron 2 of 24) 36638 ENSMUSG00000034057.8 ENSMUSG00000034057 ENSMUST00000048229 Myrfl protein_coding Interval_57812 chr15 21224082 21225183 + 0 NA intron (ENSMUSG00000040452.9, intron 2 of 12) protein_coding-intron (ENSMUSG00000040452.9, intron 1 of 11) 44475 ENSMUSG00000103296.1 ENSMUSG00000103296 ENSMUST00000195204 Gm38234 TEC Interval_169581 chr9 99252434 99252799 + 0 NA intron (ENSMUSG00000056267.14, intron 2 of 15) protein_coding-intron (ENSMUSG00000056267.14, intron 2 of 17) 7591 ENSMUSG00000111651.1 ENSMUSG00000111651 ENSMUST00000214024 Gm47199 processed_pseudogene Interval_31651 chr11 101992368 101992583 + 0 NA TTS (ENSMUSG00000010841.13) protein_coding-TTS (ENSMUSG00000010841.13) -7724 ENSMUSG00000003518.13 ENSMUSG00000003518 ENSMUST00000176261 Dusp3 protein_coding Interval_52735 chr14 49191333 49192543 + 0 NA TTS (ENSMUSG00000036282.15) protein_coding-TTS (ENSMUSG00000036282.15) 19712 ENSMUSG00000036282.15 ENSMUSG00000036282 ENSMUST00000134984 Naa30 protein_coding Interval_72029 chr17 27638849 27639647 + 0 NA Intergenic Intergenic 3905 ENSMUSG00000087387.2 ENSMUSG00000087387 ENSMUST00000133274 Gm15420 antisense Interval_63128 chr15 99239963 99240602 + 0 NA exon (ENSMUSG00000037579.7, exon 2 of 2) protein_coding-exon (ENSMUSG00000037579.7, exon 2 of 2) 2377 ENSMUSG00000037579.7 ENSMUSG00000037579 ENSMUST00000230552 Kcnh3 protein_coding Interval_86319 chr19 38688836 38690619 + 0 NA intron (ENSMUSG00000024998.17, intron 4 of 32) protein_coding-intron (ENSMUSG00000024998.17, intron 3 of 31) 14597 ENSMUSG00000117935.1 ENSMUSG00000117935 ENSMUST00000237606 Gm8717 processed_pseudogene Interval_78487 chr18 13591888 13592059 + 0 NA intron (ENSMUSG00000117608.1, intron 2 of 5) lincRNA-intron (ENSMUSG00000117608.1, intron 2 of 5) 9427 ENSMUSG00000117608.1 ENSMUSG00000117608 ENSMUST00000234112 AC103362.1 lincRNA Interval_150568 chr7 112494936 112495128 + 0 NA intron (ENSMUSG00000030770.15, intron 2 of 13) protein_coding-intron (ENSMUSG00000030770.15, intron 1 of 12) 40651 ENSMUSG00000085049.1 ENSMUSG00000085049 ENSMUST00000154848 Parvaos antisense Interval_112420 chr4 41153010 41153442 + 0 NA intron (ENSMUSG00000036241.3, intron 1 of 4) protein_coding-intron (ENSMUSG00000036241.3, intron 1 of 4) -15420 ENSMUSG00000082186.2 ENSMUSG00000082186 ENSMUST00000121384 Gm12403 processed_pseudogene Interval_7919 chr1 134583536 134584750 + 0 NA intron (ENSMUSG00000042207.17, intron 1 of 25) protein_coding-intron (ENSMUSG00000042207.17, intron 1 of 26) -37193 ENSMUSG00000046367.10 ENSMUSG00000046367 ENSMUST00000185836 Mgat4e protein_coding Interval_52226 chr14 40864388 40865760 + 0 NA intron (ENSMUSG00000037833.14, intron 3 of 3) protein_coding-intron (ENSMUSG00000037833.14, intron 3 of 7) 28192 ENSMUSG00000037833.14 ENSMUSG00000037833 ENSMUST00000225854 Sh2d4b protein_coding Interval_57591 chr15 12652649 12653154 + 0 NA intron (ENSMUSG00000022197.16, intron 2 of 4) protein_coding-intron (ENSMUSG00000022197.16, intron 2 of 4) -17555 ENSMUSG00000103130.1 ENSMUSG00000103130 ENSMUST00000191701 F830212C03Rik TEC Interval_133302 chr5 151375821 151376170 + 0 NA intron (ENSMUSG00000054622.4, intron 1 of 1) processed_transcript-intron (ENSMUSG00000097321.5, intron 1 of 3) -24149 ENSMUSG00000097321.5 ENSMUSG00000097321 ENSMUST00000201853 1700028E10Rik processed_transcript Interval_159872 chr8 104533886 104535512 + 0 NA promoter-TSS (ENSMUSG00000031878.18) protein_coding-promoter-TSS (ENSMUSG00000031878.18) 10 ENSMUSG00000031883.13 ENSMUSG00000031883 ENSMUST00000162399 Car7 protein_coding Interval_40198 chr12 102501635 102501927 + 0 NA Intergenic Intergenic 17324 ENSMUSG00000021192.16 ENSMUSG00000021192 ENSMUST00000222744 Golga5 protein_coding Interval_59399 chr15 52231948 52232298 + 0 NA Intergenic Intergenic -27000 ENSMUSG00000115738.1 ENSMUSG00000115738 ENSMUST00000226174 Gm7543 processed_pseudogene Interval_61523 chr15 82163927 82164472 + 0 NA intron (ENSMUSG00000022463.8, intron 1 of 1) protein_coding-intron (ENSMUSG00000022463.8, intron 1 of 18) 16953 ENSMUSG00000022463.8 ENSMUSG00000022463 ENSMUST00000230955 Srebf2 protein_coding Interval_105441 chr3 86516655 86516857 + 0 NA intron (ENSMUSG00000028080.16, intron 36 of 38) protein_coding-intron (ENSMUSG00000028080.16, intron 37 of 56) 31873 ENSMUSG00000057777.4 ENSMUSG00000057777 ENSMUST00000191695 Mab21l2 protein_coding Interval_151858 chr7 127149953 127150310 + 0 NA Intergenic Intergenic -4938 ENSMUSG00000108362.1 ENSMUSG00000108362 ENSMUST00000206027 Gm18561 processed_pseudogene Interval_127402 chr5 103735313 103736197 + 0 NA intron (ENSMUSG00000029313.18, intron 2 of 6) protein_coding-intron (ENSMUSG00000029313.18, intron 2 of 6) -18809 ENSMUSG00000029313.18 ENSMUSG00000029313 ENSMUST00000152145 Aff1 protein_coding Interval_109655 chr3 145764700 145765588 + 0 NA intron (ENSMUSG00000028194.15, intron 1 of 5) protein_coding-intron (ENSMUSG00000028194.15, intron 1 of 5) -25978 ENSMUSG00000105608.1 ENSMUSG00000105608 ENSMUST00000198263 Gm43408 processed_pseudogene Interval_24481 chr11 33578558 33579649 + 0 NA promoter-TSS (ENSMUSG00000020159.8) protein_coding-promoter-TSS (ENSMUSG00000020159.8) -144 ENSMUSG00000020159.8 ENSMUSG00000020159 ENSMUST00000135350 Gabrp protein_coding Interval_15255 chr10 43845609 43846010 + 0 NA Intergenic Intergenic 19229 ENSMUSG00000111342.1 ENSMUSG00000111342 ENSMUST00000217125 4933404K13Rik lincRNA Interval_162082 chr8 124968833 124969617 + 0 NA Intergenic Intergenic -19901 ENSMUSG00000031987.6 ENSMUSG00000031987 ENSMUST00000034469 Egln1 protein_coding Interval_151184 chr7 119076620 119077749 + 0 NA Intergenic Intergenic -92540 ENSMUSG00000008734.9 ENSMUSG00000008734 ENSMUST00000207614 Gprc5b protein_coding Interval_38762 chr12 82087827 82089565 + 0 NA Intergenic Intergenic -61772 ENSMUSG00000064714.1 ENSMUSG00000064714 ENSMUST00000082780 n-R5s62 rRNA Interval_132725 chr5 147410205 147410492 + 0 NA TTS (ENSMUSG00000057157.3) processed_pseudogene-TTS (ENSMUSG00000057157.3) 428 ENSMUSG00000107037.1 ENSMUSG00000107037 ENSMUST00000202874 Gm29793 processed_pseudogene Interval_147749 chr7 73341386 73341603 + 0 NA intron (ENSMUSG00000097756.2, intron 1 of 2) antisense-intron (ENSMUSG00000097756.2, intron 1 of 1) 30964 ENSMUSG00000108530.1 ENSMUSG00000108530 ENSMUST00000205600 4930429H19Rik lincRNA Interval_121488 chr4 156134572 156135115 + 0 NA Intergenic Intergenic 4330 ENSMUSG00000110404.1 ENSMUSG00000110404 ENSMUST00000209248 Rnf223 protein_coding Interval_26474 chr11 58059969 58060334 + 0 NA exon (ENSMUSG00000037331.15, exon 19 of 19) protein_coding-exon (ENSMUSG00000037331.15, exon 19 of 19) 32983 ENSMUSG00000086962.4 ENSMUSG00000086962 ENSMUST00000137124 Gm12248 protein_coding Interval_39139 chr12 85380344 85381232 + 0 NA Intergenic Intergenic -6098 ENSMUSG00000021248.9 ENSMUSG00000021248 ENSMUST00000223375 Tmed10 protein_coding Interval_30093 chr11 89134067 89135015 + 0 NA Intergenic Intergenic 2225 ENSMUSG00000089485.1 ENSMUSG00000089485 ENSMUST00000158860 Gm24734 misc_RNA Interval_75812 chr17 71572552 71573184 + 0 NA intron (ENSMUSG00000085492.7, intron 3 of 6) protein_coding-intron (ENSMUSG00000052525.14, intron 5 of 6) 20807 ENSMUSG00000052525.14 ENSMUSG00000052525 ENSMUST00000144142 Spdya protein_coding Interval_1424 chr1 23003880 23004101 + 0 NA Intergenic Intergenic -16865 ENSMUSG00000101468.1 ENSMUSG00000101468 ENSMUST00000190510 Gm7761 processed_pseudogene Interval_169860 chr9 102554561 102554828 + 0 NA Intergenic Intergenic -1414 ENSMUSG00000102126.1 ENSMUSG00000102126 ENSMUST00000189462 Gm29143 processed_pseudogene Interval_141487 chr6 128584022 128584693 + 0 NA Intergenic Intergenic 3668 ENSMUSG00000107503.1 ENSMUSG00000107503 ENSMUST00000203539 Gm44009 lincRNA Interval_43313 chr13 28980464 28980934 + 0 NA Intergenic Intergenic -26986 ENSMUSG00000076431.4 ENSMUSG00000076431 ENSMUST00000067230 Sox4 protein_coding Interval_83862 chr19 5151163 5151606 + 0 NA intron (ENSMUSG00000024855.10, intron 11 of 22) protein_coding-intron (ENSMUSG00000024855.10, intron 10 of 23) -7885 ENSMUSG00000024855.10 ENSMUSG00000024855 ENSMUST00000236470 Pacs1 protein_coding Interval_81708 chr18 63744766 63745076 + 0 NA intron (ENSMUSG00000040560.10, intron 12 of 26) protein_coding-intron (ENSMUSG00000040560.10, intron 12 of 27) 5857 ENSMUSG00000040560.10 ENSMUSG00000040560 ENSMUST00000235428 Wdr7 protein_coding Interval_169237 chr9 95697656 95698398 + 0 NA TTS (ENSMUSG00000015354.8) protein_coding-TTS (ENSMUSG00000015354.8) 17721 ENSMUSG00000015354.8 ENSMUSG00000015354 ENSMUST00000151210 Pcolce2 protein_coding Interval_148872 chr7 89510261 89510803 + 0 NA TTS (ENSMUSG00000030623.4) antisense-TTS (ENSMUSG00000030623.4) 525 ENSMUSG00000030623.4 ENSMUSG00000030623 ENSMUST00000208814 Prss23os antisense Interval_125146 chr5 64850093 64850379 + 0 NA Intergenic Intergenic 46222 ENSMUSG00000106205.1 ENSMUSG00000106205 ENSMUST00000198074 C230096K16Rik TEC Interval_69640 chr16 94783644 94784316 + 0 NA intron (ENSMUSG00000043301.16, intron 3 of 3) protein_coding-intron (ENSMUSG00000043301.16, intron 3 of 4) 62086 ENSMUSG00000116641.1 ENSMUSG00000116641 ENSMUST00000232585 Gm41505 antisense Interval_112508 chr4 41683301 41684836 + 0 NA intron (ENSMUSG00000028444.17, intron 2 of 3) protein_coding-intron (ENSMUSG00000028444.17, intron 2 of 4) -20034 ENSMUSG00000028444.17 ENSMUSG00000028444 ENSMUST00000145379 Cntfr protein_coding Interval_28747 chr11 78057071 78058773 + 0 NA exon (ENSMUSG00000061981.14, exon 8 of 11) protein_coding-exon (ENSMUSG00000061981.14, exon 8 of 11) -15083 ENSMUSG00000065401.1 ENSMUSG00000065401 ENSMUST00000083467 Mir144 miRNA Interval_100223 chr2 167768080 167768590 + 0 NA Intergenic Intergenic -9132 ENSMUSG00000084797.1 ENSMUSG00000084797 ENSMUST00000127441 Gm14321 lincRNA Interval_882 chr1 12970987 12971227 + 0 NA intron (ENSMUSG00000025938.16, intron 2 of 9) protein_coding-intron (ENSMUSG00000025938.16, intron 1 of 7) 20070 ENSMUSG00000025938.16 ENSMUSG00000025938 ENSMUST00000191566 Slco5a1 protein_coding Interval_54148 chr14 65736248 65736611 + 0 NA intron (ENSMUSG00000022032.14, intron 4 of 7) protein_coding-intron (ENSMUSG00000022032.14, intron 4 of 8) 59952 ENSMUSG00000022032.14 ENSMUSG00000022032 ENSMUST00000154373 Scara5 protein_coding Interval_149684 chr7 100621671 100623033 + 0 NA intron (ENSMUSG00000030704.14, intron 1 of 7) protein_coding-intron (ENSMUSG00000030704.14, intron 1 of 7) -2166 ENSMUSG00000082210.1 ENSMUSG00000082210 ENSMUST00000117374 Gm14382 processed_pseudogene Interval_44638 chr13 46852600 46852986 + 0 NA intron (ENSMUSG00000021375.11, intron 3 of 25) protein_coding-intron (ENSMUSG00000021375.11, intron 3 of 37) -28234 ENSMUSG00000114917.1 ENSMUSG00000114917 ENSMUST00000225017 Gm48250 antisense Interval_171026 chr9 113792692 113793665 + 0 NA promoter-TSS (ENSMUSG00000033392.16) protein_coding-promoter-TSS (ENSMUSG00000033392.16) -16880 ENSMUSG00000087992.1 ENSMUSG00000087992 ENSMUST00000157367 Gm25059 snoRNA Interval_57835 chr15 22760882 22762913 + 0 NA intron (ENSMUSG00000040420.15, intron 1 of 6) protein_coding-intron (ENSMUSG00000040420.15, intron 1 of 6) -47067 ENSMUSG00000021927.7 ENSMUSG00000021927 ENSMUST00000022493 Hnrnpa1l2-ps2 processed_pseudogene Interval_148048 chr7 78842674 78843411 + 0 NA exon (ENSMUSG00000030610.13, exon 1 of 4) protein_coding-exon (ENSMUSG00000030610.13, exon 1 of 4) -4212 ENSMUSG00000108791.1 ENSMUSG00000108791 ENSMUST00000205762 1700011D18Rik lincRNA Interval_53225 chr14 55279135 55279964 + 0 NA intron (ENSMUSG00000114987.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000114987.1, intron 1 of 1) 1138 ENSMUSG00000114987.1 ENSMUSG00000114987 ENSMUST00000227782 Gm49022 lincRNA Interval_29546 chr11 84817520 84819848 + 0 NA promoter-TSS (ENSMUSG00000018405.7) protein_coding-promoter-TSS (ENSMUSG00000018405.7) -3294 ENSMUSG00000018405.7 ENSMUSG00000018405 ENSMUST00000139076 Mrm1 protein_coding Interval_70493 chr17 10839826 10841333 + 0 NA promoter-TSS (ENSMUSG00000037196.6) protein_coding-promoter-TSS (ENSMUSG00000037196.6) 192 ENSMUSG00000023826.16 ENSMUSG00000023826 ENSMUST00000190894 Prkn protein_coding Interval_127125 chr5 100451555 100452338 + 0 NA intron (ENSMUSG00000035310.15, intron 9 of 12) protein_coding-intron (ENSMUSG00000035310.15, intron 9 of 12) 22220 ENSMUSG00000106391.1 ENSMUSG00000106391 ENSMUST00000197921 Gm42690 TEC Interval_39583 chr12 91084587 91084902 + 0 NA intron (ENSMUSG00000061533.16, intron 6 of 12) protein_coding-intron (ENSMUSG00000061533.16, intron 1 of 6) -38508 ENSMUSG00000106091.1 ENSMUSG00000106091 ENSMUST00000175436 Gm44370 miRNA Interval_34094 chr11 120491315 120492947 + 0 NA intron (ENSMUSG00000025792.9, intron 1 of 9) protein_coding-intron (ENSMUSG00000025792.9, intron 1 of 10) 263 ENSMUSG00000086929.1 ENSMUSG00000086929 ENSMUST00000142520 Gm11788 antisense Interval_49403 chr13 111755249 111755644 + 0 NA promoter-TSS (ENSMUSG00000021754.17) protein_coding-promoter-TSS (ENSMUSG00000021754.17) -4073 ENSMUSG00000021754.17 ENSMUSG00000021754 ENSMUST00000145055 Map3k1 protein_coding Interval_49194 chr13 109324732 109324978 + 0 NA TTS (ENSMUSG00000076946.2) miRNA-TTS (ENSMUSG00000076946.2) 111 ENSMUSG00000076946.2 ENSMUSG00000076946 ENSMUST00000103758 Mir582 miRNA Interval_55278 chr14 79957671 79958077 + 0 NA exon (ENSMUSG00000097927.2, exon 5 of 5) lincRNA-exon (ENSMUSG00000097927.2, exon 5 of 5) 10217 ENSMUSG00000115291.1 ENSMUSG00000115291 ENSMUST00000227077 Gm18605 processed_pseudogene Interval_626 chr1 9093526 9093865 + 0 NA intron (ENSMUSG00000025909.16, intron 2 of 20) protein_coding-intron (ENSMUSG00000025909.16, intron 3 of 4) 98421 ENSMUSG00000102316.1 ENSMUSG00000102316 ENSMUST00000193635 Gm37629 TEC Interval_153176 chr7 142083749 142084861 + 0 NA intron (ENSMUSG00000037887.11, intron 4 of 4) protein_coding-intron (ENSMUSG00000037887.11, intron 4 of 6) -5868 ENSMUSG00000077409.1 ENSMUSG00000077409 ENSMUST00000104221 Gm25416 snRNA Interval_75456 chr17 66689502 66689974 + 0 NA intron (ENSMUSG00000033278.10, intron 3 of 7) protein_coding-intron (ENSMUSG00000033278.10, intron 27 of 32) -7544 ENSMUSG00000117065.1 ENSMUSG00000117065 ENSMUST00000232933 Gm49941 processed_pseudogene Interval_115153 chr4 91654231 91655804 + 0 NA Intergenic Intergenic 8702 ENSMUSG00000086042.1 ENSMUSG00000086042 ENSMUST00000123606 Gm12670 lincRNA Interval_18543 chr10 87290749 87290988 + 0 NA exon (ENSMUSG00000103862.3, exon 1 of 1) TEC-exon (ENSMUSG00000103862.3, exon 1 of 1) 1375 ENSMUSG00000103862.3 ENSMUSG00000103862 ENSMUST00000193976 Gm10764 TEC Interval_126566 chr5 90316734 90316982 + 0 NA intron (ENSMUSG00000055204.15, intron 1 of 26) protein_coding-intron (ENSMUSG00000055204.15, intron 1 of 33) 49327 ENSMUSG00000055204.15 ENSMUSG00000055204 ENSMUST00000202226 Ankrd17 protein_coding Interval_158841 chr8 87130612 87131046 + 0 NA intron (ENSMUSG00000098684.1, intron 2 of 7) lincRNA-intron (ENSMUSG00000098684.1, intron 2 of 7) 16184 ENSMUSG00000098684.1 ENSMUSG00000098684 ENSMUST00000183611 Gm27246 lincRNA Interval_63550 chr15 101983474 101984952 + 0 NA Intergenic Intergenic -19999 ENSMUSG00000116010.1 ENSMUSG00000116010 ENSMUST00000230247 Gm36026 lincRNA Interval_109158 chr3 137091873 137092194 + 0 NA Intergenic Intergenic 24141 ENSMUSG00000065906.1 ENSMUSG00000065906 ENSMUST00000083972 Gm26107 snRNA Interval_90283 chr2 29527268 29528244 + 0 NA Intergenic Intergenic 29544 ENSMUSG00000082413.1 ENSMUSG00000082413 ENSMUST00000117074 Gm13401 processed_pseudogene Interval_82573 chr18 75227294 75227506 + 0 NA intron (ENSMUSG00000035765.10, intron 14 of 16) protein_coding-intron (ENSMUSG00000035765.10, intron 14 of 16) -44586 ENSMUSG00000094153.2 ENSMUSG00000094153 ENSMUST00000179328 Gm8807 processed_pseudogene Interval_109281 chr3 138614401 138615276 + 0 NA Intergenic Intergenic -9854 ENSMUSG00000105396.1 ENSMUSG00000105396 ENSMUST00000195927 Gm6057 processed_pseudogene Interval_22807 chr11 16070794 16070991 + 0 NA Intergenic Intergenic 33099 ENSMUSG00000104323.1 ENSMUSG00000104323 ENSMUST00000193500 Gm37319 TEC Interval_155087 chr8 26343530 26343779 + 0 NA intron (ENSMUSG00000109682.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000109682.1, intron 1 of 2) -31320 ENSMUSG00000110229.1 ENSMUSG00000110229 ENSMUST00000209523 Gm31784 lincRNA Interval_52169 chr14 37904188 37904441 + 0 NA Intergenic Intergenic 8384 ENSMUSG00000114227.1 ENSMUSG00000114227 ENSMUST00000223652 Gm5204 processed_pseudogene Interval_153937 chr8 11340118 11340926 + 0 NA intron (ENSMUSG00000031503.13, intron 3 of 47) protein_coding-intron (ENSMUSG00000031503.13, intron 3 of 47) -27833 ENSMUSG00000031502.11 ENSMUSG00000031502 ENSMUST00000209000 Col4a1 protein_coding Interval_123962 chr5 36886577 36887789 + 0 NA intron (ENSMUSG00000029120.10, intron 1 of 3) protein_coding-intron (ENSMUSG00000029120.10, intron 1 of 8) -10304 ENSMUSG00000087487.1 ENSMUSG00000087487 ENSMUST00000152862 Ppp2r2cos antisense Interval_73956 chr17 45662707 45663738 + 0 NA promoter-TSS (ENSMUSG00000086472.1) antisense-promoter-TSS (ENSMUSG00000086472.1) -297 ENSMUSG00000086472.1 ENSMUSG00000086472 ENSMUST00000156224 Gm16172 antisense Interval_36247 chr12 40257174 40259037 + 0 NA Intergenic Intergenic -32323 ENSMUSG00000113181.1 ENSMUSG00000113181 ENSMUST00000222014 Gm47954 processed_pseudogene Interval_71775 chr17 26009393 26010021 + 0 NA intron (ENSMUSG00000037098.18, intron 3 of 11) protein_coding-intron (ENSMUSG00000037098.18, intron 3 of 11) 8753 ENSMUSG00000037098.18 ENSMUSG00000037098 ENSMUST00000126306 Rab11fip3 protein_coding Interval_168157 chr9 77610467 77610673 + 0 NA Intergenic Intergenic -25930 ENSMUSG00000044938.8 ENSMUSG00000044938 ENSMUST00000057781 Klhl31 protein_coding Interval_151531 chr7 123322406 123322942 + 0 NA intron (ENSMUSG00000030766.15, intron 4 of 19) protein_coding-intron (ENSMUSG00000030766.15, intron 4 of 18) 47177 ENSMUSG00000030766.15 ENSMUSG00000030766 ENSMUST00000205805 Arhgap17 protein_coding Interval_171151 chr9 114785400 114786026 + 0 NA Intergenic Intergenic 5613 ENSMUSG00000052724.7 ENSMUSG00000052724 ENSMUST00000150678 Gm9888 antisense Interval_79762 chr18 34982819 34983157 + 0 NA promoter-TSS (ENSMUSG00000118380.1) processed_transcript-promoter-TSS (ENSMUSG00000118380.1) 18 ENSMUSG00000118380.1 ENSMUSG00000118380 ENSMUST00000238090 Gm36037 processed_transcript Interval_138964 chr6 93858119 93858677 + 0 NA intron (ENSMUSG00000045095.16, intron 2 of 24) protein_coding-intron (ENSMUSG00000045095.16, intron 2 of 21) -32217 ENSMUSG00000089069.1 ENSMUSG00000089069 ENSMUST00000158444 Gm22840 snoRNA Interval_64729 chr16 14522434 14522638 + 0 NA Intergenic Intergenic 20436 ENSMUSG00000090808.3 ENSMUSG00000090808 ENSMUST00000164528 Gm1758 unprocessed_pseudogene Interval_167446 chr9 69412594 69412967 + 0 NA intron (ENSMUSG00000032235.15, intron 9 of 13) protein_coding-intron (ENSMUSG00000032235.15, intron 9 of 15) 14132 ENSMUSG00000032235.15 ENSMUSG00000032235 ENSMUST00000147558 Ice2 protein_coding Interval_57309 chr15 8663626 8664013 + 0 NA intron (ENSMUSG00000005360.14, intron 3 of 9) protein_coding-intron (ENSMUSG00000005360.14, intron 3 of 9) -8746 ENSMUSG00000103047.1 ENSMUSG00000103047 ENSMUST00000195237 Gm37310 TEC Interval_54882 chr14 75971310 75971590 + 0 NA intron (ENSMUSG00000067995.4, intron 4 of 7) protein_coding-intron (ENSMUSG00000067995.4, intron 4 of 7) 1169 ENSMUSG00000065799.1 ENSMUSG00000065799 ENSMUST00000083865 Gm25517 snoRNA Interval_146251 chr7 44970212 44970750 + 0 NA promoter-TSS (ENSMUSG00000109111.1) antisense-promoter-TSS (ENSMUSG00000109111.1) -3099 ENSMUSG00000109111.1 ENSMUSG00000109111 ENSMUST00000209089 6530437J22Rik antisense Interval_168742 chr9 86586841 86587854 + 0 NA intron (ENSMUSG00000032418.15, intron 6 of 7) protein_coding-intron (ENSMUSG00000032418.15, intron 12 of 13) 15356 ENSMUSG00000032417.10 ENSMUSG00000032417 ENSMUST00000179212 Rwdd2a protein_coding Interval_78943 chr18 22315517 22315797 + 0 NA Intergenic Intergenic -28589 ENSMUSG00000045215.17 ENSMUSG00000045215 ENSMUST00000097655 Asxl3 protein_coding Interval_162279 chr8 126679051 126679286 + 0 NA Intergenic Intergenic 79166 ENSMUSG00000110626.1 ENSMUSG00000110626 ENSMUST00000212695 Gm45805 lincRNA Interval_36017 chr12 33322491 33322693 + 0 NA intron (ENSMUSG00000020564.17, intron 1 of 8) protein_coding-intron (ENSMUSG00000020564.17, intron 1 of 7) 8192 ENSMUSG00000020564.17 ENSMUSG00000020564 ENSMUST00000142184 Atxn7l1 protein_coding Interval_2965 chr1 51689694 51690085 + 0 NA Intergenic Intergenic 8011 ENSMUSG00000101741.1 ENSMUSG00000101741 ENSMUST00000186769 Gm28055 lincRNA Interval_69322 chr16 92210203 92210806 + 0 NA Intergenic Intergenic -3016 ENSMUSG00000116878.1 ENSMUSG00000116878 ENSMUST00000231551 Gm29880 processed_transcript Interval_147157 chr7 63912208 63914672 + 0 NA intron (ENSMUSG00000052040.10, intron 1 of 1) protein_coding-intron (ENSMUSG00000052040.10, intron 1 of 1) -3417 ENSMUSG00000095061.1 ENSMUSG00000095061 ENSMUST00000177638 E030018B13Rik protein_coding Interval_76468 chr17 80418494 80420060 + 0 NA intron (ENSMUSG00000024241.7, intron 14 of 19) protein_coding-intron (ENSMUSG00000024241.7, intron 14 of 21) 37913 ENSMUSG00000054901.7 ENSMUSG00000054901 ENSMUST00000226013 Arhgef33 protein_coding Interval_159251 chr8 92314863 92315116 + 0 NA Intergenic Intergenic 24261 ENSMUSG00000095651.1 ENSMUSG00000095651 ENSMUST00000178584 Gm21817 lincRNA Interval_170988 chr9 113514973 113515598 + 0 NA intron (ENSMUSG00000109890.2, intron 2 of 4) lincRNA-intron (ENSMUSG00000109890.2, intron 2 of 4) -6930 ENSMUSG00000109890.2 ENSMUSG00000109890 ENSMUST00000209716 AU023762 lincRNA Interval_155860 chr8 40331102 40331385 + 0 NA intron (ENSMUSG00000039478.15, intron 1 of 14) protein_coding-intron (ENSMUSG00000039478.15, intron 1 of 14) -22912 ENSMUSG00000031603.14 ENSMUSG00000031603 ENSMUST00000118639 Fgf20 protein_coding Interval_69457 chr16 93627970 93628344 + 0 NA promoter-TSS (ENSMUSG00000082815.2) protein_coding-promoter-TSS (ENSMUSG00000082815.2) 60 ENSMUSG00000082815.2 ENSMUSG00000082815 ENSMUST00000120115 Gm5678 protein_coding Interval_38303 chr12 76994780 76994980 + 0 NA intron (ENSMUSG00000112857.1, intron 2 of 3) lincRNA-intron (ENSMUSG00000112857.1, intron 2 of 3) 22420 ENSMUSG00000112857.1 ENSMUSG00000112857 ENSMUST00000219581 Gm35041 lincRNA Interval_64408 chr16 11192256 11193829 + 0 NA TTS (ENSMUSG00000005846.12) protein_coding-TTS (ENSMUSG00000005846.12) -1777 ENSMUSG00000081052.1 ENSMUSG00000081052 ENSMUST00000121027 Gm6305 processed_pseudogene Interval_90475 chr2 30690468 30691491 + 0 NA Intergenic Intergenic -21071 ENSMUSG00000087268.1 ENSMUSG00000087268 ENSMUST00000144704 Gm14486 lincRNA Interval_6888 chr1 120388851 120389468 + 0 NA Intergenic Intergenic -46646 ENSMUSG00000101275.1 ENSMUSG00000101275 ENSMUST00000186237 1700012E03Rik lincRNA Interval_106087 chr3 92824058 92825556 + 0 NA exon (ENSMUSG00000059832.4, exon 2 of 2) protein_coding-exon (ENSMUSG00000059832.4, exon 2 of 2) 2440 ENSMUSG00000059832.4 ENSMUSG00000059832 ENSMUST00000072363 Kprp protein_coding Interval_34380 chr12 3738445 3739427 + 0 NA intron (ENSMUSG00000071454.13, intron 12 of 20) protein_coding-intron (ENSMUSG00000071454.13, intron 12 of 18) 23210 ENSMUSG00000092286.1 ENSMUSG00000092286 ENSMUST00000173847 Dtnbos antisense Interval_66025 chr16 31011662 31012331 + 0 NA intron (ENSMUSG00000047434.14, intron 2 of 2) protein_coding-intron (ENSMUSG00000047434.14, intron 2 of 3) -38478 ENSMUSG00000087605.1 ENSMUSG00000087605 ENSMUST00000123905 Gm15742 sense_intronic Interval_12824 chr10 5857988 5858442 + 0 NA intron (ENSMUSG00000019775.17, intron 2 of 4) protein_coding-intron (ENSMUSG00000019775.17, intron 4 of 6) -42460 ENSMUSG00000019774.8 ENSMUSG00000019774 ENSMUST00000145687 Mtrf1l protein_coding Interval_151632 chr7 125546627 125547189 + 0 NA promoter-TSS (ENSMUSG00000108615.1) processed_pseudogene-promoter-TSS (ENSMUSG00000108615.1) -361 ENSMUSG00000108615.1 ENSMUSG00000108615 ENSMUST00000206925 Gm4973 processed_pseudogene Interval_105363 chr3 85513927 85515103 + 0 NA intron (ENSMUSG00000102805.5, intron 3 of 9) protein_coding-intron (ENSMUSG00000102805.5, intron 3 of 9) 38874 ENSMUSG00000106422.1 ENSMUSG00000106422 ENSMUST00000199844 Gm42812 lincRNA Interval_161088 chr8 117379001 117379800 + 0 NA intron (ENSMUSG00000034390.16, intron 2 of 10) protein_coding-intron (ENSMUSG00000034390.16, intron 2 of 20) -44016 ENSMUSG00000034390.16 ENSMUSG00000034390 ENSMUST00000212884 Cmip protein_coding Interval_84951 chr19 19855629 19855971 + 0 NA Intergenic Intergenic 20763 ENSMUSG00000118167.1 ENSMUSG00000118167 ENSMUST00000235148 Gm50216 lincRNA Interval_80531 chr18 43392078 43394085 + 0 NA exon (ENSMUSG00000024501.20, exon 1 of 14) protein_coding-exon (ENSMUSG00000024501.20, exon 1 of 14) -19858 ENSMUSG00000024501.20 ENSMUSG00000024501 ENSMUST00000118071 Dpysl3 protein_coding Interval_125383 chr5 66584996 66585218 + 0 NA intron (ENSMUSG00000029207.16, intron 1 of 5) protein_coding-intron (ENSMUSG00000029207.16, intron 1 of 17) 10463 ENSMUSG00000106706.1 ENSMUSG00000106706 ENSMUST00000201865 C530043K16Rik TEC Interval_93123 chr2 70415235 70416214 + 0 NA intron (ENSMUSG00000042064.13, intron 31 of 33) protein_coding-intron (ENSMUSG00000042064.13, intron 32 of 34) -43258 ENSMUSG00000047965.9 ENSMUSG00000047965 ENSMUST00000140507 Rpl9-ps7 processed_pseudogene Interval_139315 chr6 98584255 98584824 + 0 NA intron (ENSMUSG00000107614.1, intron 2 of 4) lincRNA-intron (ENSMUSG00000107614.1, intron 2 of 4) -32432 ENSMUSG00000107929.1 ENSMUSG00000107929 ENSMUST00000204069 4930595L18Rik lincRNA Interval_29136 chr11 80544108 80544300 + 0 NA intron (ENSMUSG00000035441.14, intron 21 of 21) protein_coding-intron (ENSMUSG00000035441.14, intron 21 of 21) -35098 ENSMUSG00000085078.1 ENSMUSG00000085078 ENSMUST00000133400 C030013C21Rik sense_intronic Interval_48367 chr13 98535482 98535965 + 0 NA Intergenic Intergenic -17785 ENSMUSG00000104430.1 ENSMUSG00000104430 ENSMUST00000193184 Gm37425 TEC Interval_166780 chr9 62610463 62611032 + 0 NA Intergenic Intergenic -67113 ENSMUSG00000032243.8 ENSMUSG00000032243 ENSMUST00000159012 Itga11 protein_coding Interval_24069 chr11 29931971 29933495 + 0 NA intron (ENSMUSG00000044072.14, intron 2 of 41) protein_coding-intron (ENSMUSG00000044072.14, intron 2 of 41) -49681 ENSMUSG00000080906.1 ENSMUSG00000080906 ENSMUST00000121962 Gm12095 processed_pseudogene Interval_157796 chr8 73313169 73313488 + 0 NA intron (ENSMUSG00000004383.18, intron 1 of 14) protein_coding-intron (ENSMUSG00000004383.18, intron 1 of 14) 40212 ENSMUSG00000004383.18 ENSMUSG00000004383 ENSMUST00000146249 Large1 protein_coding Interval_122889 chr5 26972633 26973362 + 0 NA intron (ENSMUSG00000061576.15, intron 1 of 25) protein_coding-intron (ENSMUSG00000061576.15, intron 1 of 25) 34624 ENSMUSG00000081970.1 ENSMUSG00000081970 ENSMUST00000120811 Gm16057 processed_pseudogene Interval_64915 chr16 17168212 17168509 + 0 NA intron (ENSMUSG00000038965.17, intron 1 of 2) protein_coding-intron (ENSMUSG00000038965.17, intron 2 of 3) 21423 ENSMUSG00000041774.16 ENSMUSG00000041774 ENSMUST00000231539 Ydjc protein_coding Interval_151411 chr7 122168640 122170862 + 0 NA TTS (ENSMUSG00000030866.8) protein_coding-TTS (ENSMUSG00000030866.8) -1707 ENSMUSG00000108688.1 ENSMUSG00000108688 ENSMUST00000206202 Gm44985 TEC Interval_170914 chr9 112033707 112034803 + 0 NA Intergenic Intergenic 84456 ENSMUSG00000065441.2 ENSMUSG00000065441 ENSMUST00000083507 Mir128-2 miRNA Interval_166566 chr9 60957447 60958494 + 0 NA Intergenic Intergenic 38747 ENSMUSG00000111444.1 ENSMUSG00000111444 ENSMUST00000216374 Gm47923 lincRNA Interval_110111 chr3 153384071 153385058 + 0 NA intron (ENSMUSG00000052544.9, intron 3 of 4) protein_coding-intron (ENSMUSG00000052544.9, intron 2 of 2) 70851 ENSMUSG00000099114.1 ENSMUSG00000099114 ENSMUST00000184201 Gm27405 miRNA Interval_87846 chr19 56451379 56451574 + 0 NA Intergenic Intergenic -10180 ENSMUSG00000035818.14 ENSMUSG00000035818 ENSMUST00000225008 Plekhs1 protein_coding Interval_135777 chr6 47272698 47273882 + 0 NA intron (ENSMUSG00000039419.17, intron 2 of 3) protein_coding-intron (ENSMUSG00000039419.17, intron 2 of 3) 159799 ENSMUSG00000107853.1 ENSMUSG00000107853 ENSMUST00000203098 Gm18584 processed_pseudogene Interval_108135 chr3 121793210 121795316 + 0 NA intron (ENSMUSG00000028127.10, intron 1 of 21) protein_coding-intron (ENSMUSG00000028127.10, intron 2 of 22) -5691 ENSMUSG00000105597.1 ENSMUSG00000105597 ENSMUST00000198169 4633401B06Rik TEC Interval_759 chr1 10719406 10719780 + 0 NA intron (ENSMUSG00000042501.12, intron 1 of 9) protein_coding-intron (ENSMUSG00000042501.12, intron 1 of 10) 352 ENSMUSG00000042501.12 ENSMUSG00000042501 ENSMUST00000140938 Cpa6 protein_coding Interval_162407 chr8 128108438 128108612 + 0 NA Intergenic Intergenic 169700 ENSMUSG00000099326.1 ENSMUSG00000099326 ENSMUST00000184910 Mir21c miRNA Interval_134463 chr6 28921860 28923662 + 0 NA intron (ENSMUSG00000001424.14, intron 16 of 16) protein_coding-intron (ENSMUSG00000001424.14, intron 16 of 16) -58873 ENSMUSG00000092090.2 ENSMUSG00000092090 ENSMUST00000164104 Gm3294 lincRNA Interval_108546 chr3 128420380 128420609 + 0 NA Intergenic Intergenic -119878 ENSMUSG00000065248.1 ENSMUSG00000065248 ENSMUST00000083314 Gm22293 snoRNA Interval_14111 chr10 27605480 27605741 + 0 NA intron (ENSMUSG00000019899.17, intron 1 of 1) protein_coding-intron (ENSMUSG00000019899.17, intron 1 of 64) 9718 ENSMUSG00000103931.1 ENSMUSG00000103931 ENSMUST00000192114 Gm36962 TEC Interval_106036 chr3 91057641 91057973 + 0 NA Intergenic Intergenic -13855 ENSMUSG00000086377.1 ENSMUSG00000086377 ENSMUST00000131367 4930529C04Rik processed_pseudogene Interval_66205 chr16 32323493 32324564 + 0 NA Intergenic Intergenic 2667 ENSMUSG00000116900.1 ENSMUSG00000116900 ENSMUST00000232196 Gm8387 processed_pseudogene Interval_39335 chr12 86795141 86796330 + 0 NA Intergenic Intergenic -14222 ENSMUSG00000088403.1 ENSMUSG00000088403 ENSMUST00000157778 Gm25888 misc_RNA Interval_82692 chr18 75982086 75983263 + 0 NA intron (ENSMUSG00000044646.15, intron 2 of 5) protein_coding-intron (ENSMUSG00000044646.15, intron 2 of 4) 33003 ENSMUSG00000118311.1 ENSMUSG00000118311 ENSMUST00000238127 1700003O11Rik antisense Interval_172093 chrX 7412506 7413032 + 0 NA promoter-TSS (ENSMUSG00000063018.6) processed_transcript-promoter-TSS (ENSMUSG00000063018.6) 8316 ENSMUSG00000063018.6 ENSMUSG00000063018 ENSMUST00000150671 2010204K13Rik processed_transcript Interval_119469 chr4 137770178 137772061 + 0 NA intron (ENSMUSG00000028766.10, intron 1 of 11) protein_coding-intron (ENSMUSG00000028766.10, intron 1 of 11) 11072 ENSMUSG00000028766.10 ENSMUSG00000028766 ENSMUST00000143757 Alpl protein_coding Interval_166765 chr9 62497221 62498288 + 0 NA intron (ENSMUSG00000041729.15, intron 1 of 2) protein_coding-intron (ENSMUSG00000041729.15, intron 1 of 11) -17275 ENSMUSG00000084540.1 ENSMUSG00000084540 ENSMUST00000122591 n-R5s84 rRNA Interval_86722 chr19 43223763 43223965 + 0 NA promoter-TSS (ENSMUSG00000074852.4) protein_coding-promoter-TSS (ENSMUSG00000074852.4) -175 ENSMUSG00000074852.4 ENSMUSG00000074852 ENSMUST00000236823 Hpse2 protein_coding Interval_164189 chr9 32350008 32350582 + 0 NA intron (ENSMUSG00000111056.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000111056.1, intron 1 of 2) 1613 ENSMUSG00000111056.1 ENSMUSG00000111056 ENSMUST00000213360 Gm39317 lincRNA Interval_56325 chr14 117446871 117447134 + 0 NA intron (ENSMUSG00000058571.11, intron 3 of 9) protein_coding-intron (ENSMUSG00000058571.11, intron 3 of 8) 506845 ENSMUSG00000098648.1 ENSMUSG00000098648 ENSMUST00000183564 Mir6239 miRNA Interval_33595 chr11 117407726 117408528 + 0 NA Intergenic Intergenic -6262 ENSMUSG00000086588.1 ENSMUSG00000086588 ENSMUST00000124901 Gm11729 lincRNA Interval_140072 chr6 113827768 113827985 + 0 NA intron (ENSMUSG00000030302.16, intron 2 of 19) protein_coding-intron (ENSMUSG00000030302.16, intron 2 of 19) -28192 ENSMUSG00000108297.1 ENSMUSG00000108297 ENSMUST00000204957 Gm44167 sense_intronic Interval_13612 chr10 20186567 20187803 + 0 NA intron (ENSMUSG00000019996.17, intron 1 of 5) protein_coding-intron (ENSMUSG00000019996.17, intron 1 of 17) 14653 ENSMUSG00000110754.1 ENSMUSG00000110754 ENSMUST00000214323 4930405J17Rik antisense Interval_6380 chr1 106603552 106603796 + 0 NA intron (ENSMUSG00000057329.7, intron 1 of 1) protein_coding-intron (ENSMUSG00000057329.7, intron 1 of 1) 3196 ENSMUSG00000103348.1 ENSMUSG00000103348 ENSMUST00000192399 Gm37053 TEC Interval_80229 chr18 38402548 38403824 + 0 NA Intergenic Intergenic 10098 ENSMUSG00000117986.1 ENSMUSG00000117986 ENSMUST00000235696 Gm50344 processed_pseudogene Interval_162672 chr9 7718737 7719080 + 0 NA Intergenic Intergenic -4239 ENSMUSG00000110887.1 ENSMUSG00000110887 ENSMUST00000214564 Cbx3-ps8 processed_pseudogene Interval_79115 chr18 24672377 24675995 + 0 NA intron (ENSMUSG00000039616.10, intron 5 of 11) protein_coding-intron (ENSMUSG00000039616.10, intron 5 of 14) 12096 ENSMUSG00000084472.1 ENSMUSG00000084472 ENSMUST00000122523 n-R5s23 rRNA Interval_24926 chr11 41450648 41450990 + 0 NA Intergenic Intergenic -47918 ENSMUSG00000058809.8 ENSMUSG00000058809 ENSMUST00000119713 Hspd1-ps3 processed_pseudogene Interval_49399 chr13 111724912 111726094 + 0 NA promoter-TSS (ENSMUSG00000086480.1) antisense-promoter-TSS (ENSMUSG00000086480.1) -14 ENSMUSG00000086480.1 ENSMUSG00000086480 ENSMUST00000132564 Gm15287 antisense Interval_152601 chr7 135049023 135049480 + 0 NA intron (ENSMUSG00000058325.6, intron 29 of 51) protein_coding-intron (ENSMUSG00000058325.6, intron 29 of 51) 82395 ENSMUSG00000077150.1 ENSMUSG00000077150 ENSMUST00000103962 Gm24581 snoRNA Interval_153650 chr8 4284114 4284313 + 0 NA Intergenic Intergenic -8331 ENSMUSG00000002949.15 ENSMUSG00000002949 ENSMUST00000160371 Timm44 protein_coding Interval_151555 chr7 123524168 123524760 + 0 NA Intergenic Intergenic -43535 ENSMUSG00000030757.13 ENSMUSG00000030757 ENSMUST00000128217 Zkscan2 protein_coding Interval_25046 chr11 43492910 43493300 + 0 NA Intergenic Intergenic 18829 ENSMUSG00000046491.10 ENSMUSG00000046491 ENSMUST00000151912 C1qtnf2 protein_coding Interval_131786 chr5 139860793 139861162 + 0 NA Intergenic Intergenic 16047 ENSMUSG00000064694.1 ENSMUSG00000064694 ENSMUST00000082760 Gm24146 misc_RNA Interval_74849 chr17 56861220 56862101 + 0 NA intron (ENSMUSG00000024207.8, intron 5 of 14) protein_coding-intron (ENSMUSG00000024207.8, intron 5 of 14) 12787 ENSMUSG00000024207.8 ENSMUSG00000024207 ENSMUST00000043062 Acsbg2 protein_coding Interval_150344 chr7 109737500 109737714 + 0 NA intron (ENSMUSG00000031021.13, intron 4 of 4) protein_coding-intron (ENSMUSG00000031021.13, intron 4 of 4) -5881 ENSMUSG00000035951.2 ENSMUSG00000035951 ENSMUST00000035372 Ascl3 protein_coding Interval_75615 chr17 69322836 69324244 + 0 NA intron (ENSMUSG00000117323.1, intron 2 of 2) lincRNA-intron (ENSMUSG00000117323.1, intron 2 of 2) 7546 ENSMUSG00000117323.1 ENSMUSG00000117323 ENSMUST00000232963 Gm36487 lincRNA Interval_44640 chr13 46872049 46872293 + 0 NA intron (ENSMUSG00000021375.11, intron 2 of 2) protein_coding-intron (ENSMUSG00000021375.11, intron 2 of 37) -8856 ENSMUSG00000114917.1 ENSMUSG00000114917 ENSMUST00000225017 Gm48250 antisense Interval_34417 chr12 3968331 3968796 + 0 NA TTS (ENSMUSG00000020658.10) protein_coding-TTS (ENSMUSG00000020658.10) 13285 ENSMUSG00000020658.10 ENSMUSG00000020658 ENSMUST00000218545 Efr3b protein_coding Interval_60395 chr15 73469309 73470864 + 0 NA Intergenic Intergenic 27211 ENSMUSG00000115885.1 ENSMUSG00000115885 ENSMUST00000230637 Gm19811 processed_pseudogene Interval_124192 chr5 39644042 39645443 + 0 NA promoter-TSS (ENSMUSG00000051022.7) protein_coding-promoter-TSS (ENSMUSG00000051022.7) -145 ENSMUSG00000051022.7 ENSMUSG00000051022 ENSMUST00000152057 Hs3st1 protein_coding Interval_109178 chr3 137652098 137652410 + 0 NA Intergenic Intergenic -7473 ENSMUSG00000105325.1 ENSMUSG00000105325 ENSMUST00000198288 Gm30946 processed_pseudogene Interval_136219 chr6 52122787 52123260 + 0 NA Intergenic Intergenic 4781 ENSMUSG00000081979.1 ENSMUSG00000081979 ENSMUST00000121011 Rps8-ps3 processed_pseudogene Interval_16017 chr10 60147245 60148717 + 0 NA Intergenic Intergenic 21205 ENSMUSG00000105468.1 ENSMUSG00000105468 ENSMUST00000198998 Mir6906 miRNA Interval_138956 chr6 93808634 93809291 + 0 NA intron (ENSMUSG00000045095.16, intron 2 of 4) protein_coding-intron (ENSMUSG00000045095.16, intron 3 of 21) 15190 ENSMUSG00000088627.1 ENSMUSG00000088627 ENSMUST00000158002 Gm23035 snRNA Interval_26643 chr11 59412827 59414550 + 0 NA intron (ENSMUSG00000009894.15, intron 4 of 4) protein_coding-intron (ENSMUSG00000009894.15, intron 4 of 4) 36311 ENSMUSG00000009894.15 ENSMUSG00000009894 ENSMUST00000125846 Snap47 protein_coding Interval_89396 chr2 20403000 20403826 + 0 NA intron (ENSMUSG00000036617.17, intron 2 of 3) protein_coding-intron (ENSMUSG00000036617.17, intron 3 of 7) 29521 ENSMUSG00000085477.7 ENSMUSG00000085477 ENSMUST00000149398 Gm13335 antisense Interval_107937 chr3 117024317 117024540 + 0 NA Intergenic Intergenic -24842 ENSMUSG00000105221.1 ENSMUSG00000105221 ENSMUST00000198431 Gm9332 processed_pseudogene Interval_127702 chr5 106810312 106810704 + 0 NA Intergenic Intergenic 69190 ENSMUSG00000098703.1 ENSMUSG00000098703 ENSMUST00000183903 Gm27527 miRNA Interval_142328 chr6 140660436 140662948 + 0 NA intron (ENSMUSG00000030232.18, intron 8 of 8) protein_coding-intron (ENSMUSG00000030232.18, intron 8 of 8) 24954 ENSMUSG00000030232.18 ENSMUSG00000030232 ENSMUST00000160772 Aebp2 protein_coding Interval_51635 chr14 30968312 30969145 + 0 NA intron (ENSMUSG00000021918.10, intron 6 of 11) protein_coding-intron (ENSMUSG00000021918.10, intron 7 of 14) 17317 ENSMUSG00000021918.10 ENSMUSG00000021918 ENSMUST00000226146 Nek4 protein_coding Interval_67315 chr16 45967341 45968526 + 0 NA intron (ENSMUSG00000085826.1, intron 2 of 2) protein_coding-intron (ENSMUSG00000087141.1, intron 3 of 3) 22327 ENSMUSG00000085826.1 ENSMUSG00000085826 ENSMUST00000134359 Gm15638 antisense Interval_40520 chr12 105456650 105457020 + 0 NA intron (ENSMUSG00000094910.1, intron 1 of 1) protein_coding-intron (ENSMUSG00000094910.1, intron 1 of 1) 2979 ENSMUSG00000094910.1 ENSMUSG00000094910 ENSMUST00000178224 D430019H16Rik protein_coding Interval_6634 chr1 118427085 118427419 + 0 NA intron (ENSMUSG00000064302.13, intron 2 of 31) protein_coding-intron (ENSMUSG00000064302.13, intron 2 of 39) 26233 ENSMUSG00000077257.1 ENSMUSG00000077257 ENSMUST00000104069 Gm26080 snoRNA Interval_155427 chr8 33507591 33508862 + 0 NA Intergenic Intergenic -8512 ENSMUSG00000009628.14 ENSMUSG00000009628 ENSMUST00000009772 Tex15 protein_coding Interval_166493 chr9 60045056 60045859 + 0 NA intron (ENSMUSG00000032289.15, intron 7 of 16) protein_coding-intron (ENSMUSG00000032289.15, intron 2 of 11) -3278 ENSMUSG00000088090.1 ENSMUSG00000088090 ENSMUST00000157465 Gm23668 rRNA Interval_104880 chr3 77561241 77561972 + 0 NA TTS (ENSMUSG00000102489.1) processed_pseudogene-TTS (ENSMUSG00000102489.1) 2264 ENSMUSG00000102489.1 ENSMUSG00000102489 ENSMUST00000192011 Dnmt3a-ps1 processed_pseudogene Interval_36740 chr12 52834726 52836719 + 0 NA intron (ENSMUSG00000061603.8, intron 1 of 11) protein_coding-intron (ENSMUSG00000061603.8, intron 2 of 13) 39886 ENSMUSG00000061603.8 ENSMUSG00000061603 ENSMUST00000219786 Akap6 protein_coding Interval_109180 chr3 137682904 137684142 + 0 NA Intergenic Intergenic -7464 ENSMUSG00000106122.1 ENSMUSG00000106122 ENSMUST00000196557 Gm42610 lincRNA Interval_99182 chr2 157844689 157845611 + 0 NA intron (ENSMUSG00000027649.15, intron 11 of 15) protein_coding-intron (ENSMUSG00000027649.15, intron 11 of 15) 55286 ENSMUSG00000027649.15 ENSMUSG00000027649 ENSMUST00000156300 Ctnnbl1 protein_coding Interval_67388 chr16 48273796 48274652 + 0 NA Intergenic Intergenic -9509 ENSMUSG00000058550.15 ENSMUSG00000058550 ENSMUST00000050705 Dppa4 protein_coding Interval_66103 chr16 31620731 31621183 + 0 NA intron (ENSMUSG00000116597.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000116597.1, intron 1 of 1) 3222 ENSMUSG00000116597.1 ENSMUSG00000116597 ENSMUST00000232209 Gm536 lincRNA Interval_161272 chr8 119428110 119428510 + 0 NA Intergenic Intergenic -8839 ENSMUSG00000074063.10 ENSMUSG00000074063 ENSMUST00000144381 Osgin1 protein_coding Interval_169263 chr9 95953784 95955492 + 0 NA promoter-TSS (ENSMUSG00000032410.13) protein_coding-promoter-TSS (ENSMUSG00000032410.13) 3 ENSMUSG00000097777.7 ENSMUSG00000097777 ENSMUST00000181139 Gm16794 antisense Interval_22904 chr11 17248186 17248600 + 0 NA Intergenic Intergenic -9295 ENSMUSG00000000581.8 ENSMUSG00000000581 ENSMUST00000130330 C1d protein_coding Interval_161902 chr8 123648227 123648733 + 0 NA intron (ENSMUSG00000092329.1, intron 1 of 15) protein_coding-intron (ENSMUSG00000092329.1, intron 1 of 15) -5449 ENSMUSG00000039960.5 ENSMUSG00000039960 ENSMUST00000045487 Rhou protein_coding Interval_142118 chr6 137327888 137329028 + 0 NA intron (ENSMUSG00000030223.14, intron 1 of 2) protein_coding-intron (ENSMUSG00000030223.14, intron 1 of 26) -82301 ENSMUSG00000030223.14 ENSMUSG00000030223 ENSMUST00000203127 Ptpro protein_coding Interval_93610 chr2 74886598 74887701 + 0 NA promoter-TSS (ENSMUSG00000083837.1) processed_pseudogene-promoter-TSS (ENSMUSG00000083837.1) -143 ENSMUSG00000083837.1 ENSMUSG00000083837 ENSMUST00000117183 Gm14427 processed_pseudogene Interval_5526 chr1 89566469 89567014 + 0 NA intron (ENSMUSG00000055013.16, intron 1 of 16) protein_coding-intron (ENSMUSG00000055013.16, intron 1 of 17) -2024 ENSMUSG00000101662.1 ENSMUSG00000101662 ENSMUST00000191576 Gm28499 sense_intronic Interval_129029 chr5 116886085 116887370 + 0 NA Intergenic Intergenic -56207 ENSMUSG00000106909.1 ENSMUSG00000106909 ENSMUST00000201752 Gm43122 lincRNA Interval_152196 chr7 130577007 130577660 + 0 NA promoter-TSS (ENSMUSG00000030852.18) protein_coding-promoter-TSS (ENSMUSG00000030852.18) -38125 ENSMUSG00000040331.16 ENSMUSG00000040331 ENSMUST00000161414 Nsmce4a protein_coding Interval_167214 chr9 66240700 66241552 + 0 NA intron (ENSMUSG00000032380.9, intron 4 of 9) protein_coding-intron (ENSMUSG00000032380.9, intron 4 of 11) 82900 ENSMUSG00000032380.9 ENSMUSG00000032380 ENSMUST00000129778 Dapk2 protein_coding Interval_91062 chr2 34764391 34765275 + 0 NA Intergenic Intergenic -8833 ENSMUSG00000026864.13 ENSMUSG00000026864 ENSMUST00000129333 Hspa5 protein_coding Interval_56344 chr14 117917648 117917899 + 0 NA intron (ENSMUSG00000058571.11, intron 7 of 9) protein_coding-intron (ENSMUSG00000058571.11, intron 6 of 8) 36074 ENSMUSG00000098648.1 ENSMUSG00000098648 ENSMUST00000183564 Mir6239 miRNA Interval_62808 chr15 97135201 97135699 + 0 NA Intergenic Intergenic 31794 ENSMUSG00000116295.1 ENSMUSG00000116295 ENSMUST00000229491 Gm32885 lincRNA Interval_71350 chr17 22519674 22520826 + 0 NA Intergenic Intergenic 25628 ENSMUSG00000117259.1 ENSMUSG00000117259 ENSMUST00000232727 Gm19012 processed_pseudogene Interval_161324 chr8 119743382 119744118 + 0 NA intron (ENSMUSG00000034112.9, intron 13 of 26) protein_coding-intron (ENSMUSG00000034112.9, intron 13 of 26) 29296 ENSMUSG00000110445.1 ENSMUSG00000110445 ENSMUST00000212203 Gm45747 TEC Interval_69343 chr16 92358747 92359477 + 0 NA promoter-TSS (ENSMUSG00000039639.7) protein_coding-promoter-TSS (ENSMUSG00000039639.7) -238 ENSMUSG00000039639.7 ENSMUSG00000039639 ENSMUST00000166707 Kcne1 protein_coding Interval_26142 chr11 54726303 54727866 + 0 NA intron (ENSMUSG00000052298.12, intron 4 of 4) protein_coding-intron (ENSMUSG00000052298.12, intron 3 of 5) -1593 ENSMUSG00000086039.1 ENSMUSG00000086039 ENSMUST00000147847 Gm12227 antisense Interval_136462 chr6 54687381 54688173 + 0 NA intron (ENSMUSG00000038065.13, intron 1 of 2) protein_coding-intron (ENSMUSG00000038065.13, intron 1 of 1) -5860 ENSMUSG00000101651.1 ENSMUSG00000101651 ENSMUST00000188574 Gm28402 antisense Interval_114226 chr4 68952698 68952991 + 0 NA intron (ENSMUSG00000028351.5, intron 1 of 7) protein_coding-intron (ENSMUSG00000028351.5, intron 1 of 7) -111437 ENSMUSG00000028351.5 ENSMUSG00000028351 ENSMUST00000140572 Brinp1 protein_coding Interval_31470 chr11 100859829 100860928 + 0 NA promoter-TSS (ENSMUSG00000004043.14) protein_coding-promoter-TSS (ENSMUSG00000004043.14) -107 ENSMUSG00000004043.14 ENSMUSG00000004043 ENSMUST00000135272 Stat5a protein_coding Interval_43440 chr13 30966325 30966885 + 0 NA intron (ENSMUSG00000021357.14, intron 1 of 1) protein_coding-intron (ENSMUSG00000021357.14, intron 1 of 27) 7452 ENSMUSG00000021357.14 ENSMUSG00000021357 ENSMUST00000223216 Exoc2 protein_coding Interval_52255 chr14 41050481 41051063 + 0 NA intron (ENSMUSG00000021791.7, intron 3 of 3) protein_coding-intron (ENSMUSG00000021791.7, intron 3 of 3) -2881 ENSMUSG00000114196.1 ENSMUSG00000114196 ENSMUST00000224095 Gm47547 antisense Interval_79155 chr18 25104947 25105253 + 0 NA intron (ENSMUSG00000034295.10, intron 17 of 24) protein_coding-intron (ENSMUSG00000034295.10, intron 19 of 26) 63594 ENSMUSG00000024269.11 ENSMUSG00000024269 ENSMUST00000115817 Tpgs2 protein_coding Interval_136030 chr6 50112899 50113104 + 0 NA exon (ENSMUSG00000038388.14, exon 1 of 1) protein_coding-exon (ENSMUSG00000038388.14, exon 1 of 1) 2723 ENSMUSG00000038388.14 ENSMUSG00000038388 ENSMUST00000167319 Mpp6 protein_coding Interval_156375 chr8 47785648 47787004 + 0 NA Intergenic Intergenic 12771 ENSMUSG00000110539.1 ENSMUSG00000110539 ENSMUST00000211965 Gm45864 lincRNA Interval_12084 chr1 189646521 189646725 + 0 NA intron (ENSMUSG00000026605.14, intron 17 of 17) protein_coding-intron (ENSMUSG00000026605.14, intron 2 of 2) -6389 ENSMUSG00000103087.1 ENSMUSG00000103087 ENSMUST00000192679 Gm38122 TEC Interval_143507 chr7 11085361 11085744 + 0 NA intron (ENSMUSG00000109730.1, intron 2 of 4) unprocessed_pseudogene-intron (ENSMUSG00000109730.1, intron 2 of 4) 2669 ENSMUSG00000109730.1 ENSMUSG00000109730 ENSMUST00000211511 Gm7151 unprocessed_pseudogene Interval_29076 chr11 80183370 80184494 + 0 NA promoter-TSS (ENSMUSG00000020707.6) protein_coding-promoter-TSS (ENSMUSG00000020707.6) -291 ENSMUSG00000020707.6 ENSMUSG00000020707 ENSMUST00000134909 Rnf135 protein_coding Interval_26218 chr11 55194648 55195623 + 0 NA intron (ENSMUSG00000084980.1, intron 2 of 2) antisense-intron (ENSMUSG00000084980.1, intron 2 of 2) 2547 ENSMUSG00000084980.1 ENSMUSG00000084980 ENSMUST00000142953 Slc36a1os antisense Interval_134875 chr6 33018442 33019051 + 0 NA intron (ENSMUSG00000053768.13, intron 2 of 7) protein_coding-intron (ENSMUSG00000053768.13, intron 2 of 7) -19722 ENSMUSG00000085847.1 ENSMUSG00000085847 ENSMUST00000138298 Gm14540 antisense Interval_8908 chr1 152024654 152025033 + 0 NA intron (ENSMUSG00000032666.16, intron 1 of 6) protein_coding-intron (ENSMUSG00000032666.16, intron 1 of 5) 65127 ENSMUSG00000032666.16 ENSMUSG00000032666 ENSMUST00000121533 1700025G04Rik protein_coding Interval_138775 chr6 91758259 91758480 + 0 NA exon (ENSMUSG00000030096.8, exon 15 of 15) protein_coding-exon (ENSMUSG00000030096.8, exon 15 of 15) 8185 ENSMUSG00000030096.8 ENSMUSG00000030096 ENSMUST00000206988 Slc6a6 protein_coding Interval_7977 chr1 135002870 135003906 + 0 NA intron (ENSMUSG00000042793.13, intron 4 of 4) protein_coding-intron (ENSMUSG00000042793.13, intron 8 of 17) 18703 ENSMUSG00000042793.13 ENSMUSG00000042793 ENSMUST00000139369 Lgr6 protein_coding Interval_33378 chr11 116210532 116211844 + 0 NA intron (ENSMUSG00000020778.12, intron 1 of 1) protein_coding-intron (ENSMUSG00000020778.12, intron 3 of 3) -5298 ENSMUSG00000092300.7 ENSMUSG00000092300 ENSMUST00000173567 Cdk3 polymorphic_pseudogene Interval_11392 chr1 181545032 181547138 + 0 NA Intergenic Intergenic -34634 ENSMUSG00000050625.4 ENSMUSG00000050625 ENSMUST00000058825 Ccdc121 protein_coding Interval_16309 chr10 62105063 62105395 + 0 NA Intergenic Intergenic -27946 ENSMUSG00000044312.4 ENSMUSG00000044312 ENSMUST00000218216 Neurog3 protein_coding Interval_10302 chr1 168329140 168329448 + 0 NA intron (ENSMUSG00000052534.15, intron 2 of 7) protein_coding-intron (ENSMUSG00000052534.15, intron 2 of 6) 8377 ENSMUSG00000103780.1 ENSMUSG00000103780 ENSMUST00000192272 Gm37524 TEC Interval_161832 chr8 123093406 123093897 + 0 NA promoter-TSS (ENSMUSG00000000738.18) protein_coding-promoter-TSS (ENSMUSG00000000738.18) -870 ENSMUSG00000000738.18 ENSMUSG00000000738 ENSMUST00000212364 Spg7 protein_coding Interval_168412 chr9 80124952 80125418 + 0 NA intron (ENSMUSG00000034252.14, intron 8 of 17) protein_coding-intron (ENSMUSG00000034252.14, intron 13 of 22) -3248 ENSMUSG00000084917.3 ENSMUSG00000084917 ENSMUST00000165458 Gm17477 antisense Interval_29576 chr11 85075864 85076372 + 0 NA intron (ENSMUSG00000000804.14, intron 5 of 33) protein_coding-intron (ENSMUSG00000000804.14, intron 5 of 33) -3123 ENSMUSG00000082917.1 ENSMUSG00000082917 ENSMUST00000121509 Gm11440 processed_pseudogene Interval_54657 chr14 72979803 72980626 + 0 NA promoter-TSS (ENSMUSG00000115085.1) processed_pseudogene-promoter-TSS (ENSMUSG00000115085.1) -310 ENSMUSG00000115085.1 ENSMUSG00000115085 ENSMUST00000226196 Gm9198 processed_pseudogene Interval_42713 chr13 18461998 18462616 + 0 NA Intergenic Intergenic -64621 ENSMUSG00000009734.18 ENSMUSG00000009734 ENSMUST00000222900 Pou6f2 protein_coding Interval_131065 chr5 134889657 134889840 + 0 NA Intergenic Intergenic 16985 ENSMUSG00000040576.8 ENSMUSG00000040576 ENSMUST00000047305 Tmem270 protein_coding Interval_135115 chr6 35569253 35569594 + 0 NA Intergenic Intergenic -29624 ENSMUSG00000029840.8 ENSMUSG00000029840 ENSMUST00000201026 Mtpn protein_coding Interval_70229 chr17 6860144 6861940 + 0 NA Intergenic Intergenic 34295 ENSMUSG00000076218.1 ENSMUSG00000076218 ENSMUST00000102263 Mir692-1 miRNA Interval_84049 chr19 6956287 6956515 + 0 NA promoter-TSS (ENSMUSG00000024960.9) protein_coding-promoter-TSS (ENSMUSG00000024960.9) 1312 ENSMUSG00000024960.9 ENSMUSG00000024960 ENSMUST00000237446 Plcb3 protein_coding Interval_5576 chr1 89926800 89927509 + 0 NA TTS (ENSMUSG00000034486.8) protein_coding-TTS (ENSMUSG00000034486.8) 2031 ENSMUSG00000034486.8 ENSMUSG00000034486 ENSMUST00000187633 Gbx2 protein_coding Interval_77760 chr18 3301960 3302178 + 0 NA intron (ENSMUSG00000063889.16, intron 3 of 8) protein_coding-intron (ENSMUSG00000063889.16, intron 3 of 8) -34669 ENSMUSG00000097746.2 ENSMUSG00000097746 ENSMUST00000234647 Gm6225 processed_transcript Interval_116440 chr4 112092242 112093130 + 0 NA intron (ENSMUSG00000055960.12, intron 2 of 10) protein_coding-intron (ENSMUSG00000055960.12, intron 2 of 10) 11216 ENSMUSG00000055960.12 ENSMUSG00000055960 ENSMUST00000106566 Skint4 protein_coding Interval_22081 chr11 6216675 6217098 + 0 NA intron (ENSMUSG00000020447.5, intron 14 of 18) protein_coding-intron (ENSMUSG00000020447.5, intron 14 of 18) 13257 ENSMUSG00000020447.5 ENSMUSG00000020447 ENSMUST00000004505 Npc1l1 protein_coding Interval_51640 chr14 31000928 31002591 + 0 NA promoter-TSS (ENSMUSG00000021917.16) protein_coding-promoter-TSS (ENSMUSG00000021917.16) -87 ENSMUSG00000021917.16 ENSMUSG00000021917 ENSMUST00000226374 Spcs1 protein_coding Interval_13394 chr10 17743849 17744948 + 0 NA Intergenic Intergenic 21165 ENSMUSG00000039910.10 ENSMUSG00000039910 ENSMUST00000218370 Cited2 protein_coding Interval_68847 chr16 87553514 87553996 + 0 NA intron (ENSMUSG00000025610.7, intron 1 of 4) protein_coding-intron (ENSMUSG00000025610.7, intron 1 of 4) 425 ENSMUSG00000025610.7 ENSMUSG00000025610 ENSMUST00000026700 Map3k7cl protein_coding Interval_89086 chr2 16041909 16042183 + 0 NA intron (ENSMUSG00000075520.5, intron 29 of 38) protein_coding-intron (ENSMUSG00000075520.5, intron 29 of 38) -18621 ENSMUSG00000103865.1 ENSMUSG00000103865 ENSMUST00000193596 Gm37416 TEC Interval_157632 chr8 71907951 71909241 + 0 NA promoter-TSS (ENSMUSG00000089857.9) protein_coding-promoter-TSS (ENSMUSG00000089857.9) -39 ENSMUSG00000066880.15 ENSMUSG00000066880 ENSMUST00000119003 Zfp617 protein_coding Interval_98644 chr2 153767385 153768175 + 0 NA exon (ENSMUSG00000027479.14, exon 7 of 7) protein_coding-exon (ENSMUSG00000027479.14, exon 7 of 7) -13112 ENSMUSG00000044083.12 ENSMUSG00000044083 ENSMUST00000175856 Efcab8 protein_coding Interval_48720 chr13 102113870 102114434 + 0 NA TTS (ENSMUSG00000102542.1) TEC-TTS (ENSMUSG00000102542.1) 1883 ENSMUSG00000102542.1 ENSMUSG00000102542 ENSMUST00000195109 Gm38133 TEC Interval_90181 chr2 28787184 28787865 + 0 NA intron (ENSMUSG00000026807.8, intron 11 of 12) protein_coding-intron (ENSMUSG00000026807.8, intron 11 of 12) 6045 ENSMUSG00000082796.1 ENSMUSG00000082796 ENSMUST00000121089 Gm13385 processed_pseudogene Interval_2282 chr1 37646926 37647617 + 0 NA intron (ENSMUSG00000026090.16, intron 1 of 9) protein_coding-intron (ENSMUSG00000026090.16, intron 2 of 3) -13451 ENSMUSG00000104365.1 ENSMUSG00000104365 ENSMUST00000192005 4930470B04Rik TEC Interval_76937 chr17 85059479 85059769 + 0 NA intron (ENSMUSG00000024131.8, intron 7 of 9) protein_coding-intron (ENSMUSG00000024131.8, intron 7 of 9) 17850 ENSMUSG00000024127.15 ENSMUSG00000024127 ENSMUST00000234393 Prepl protein_coding Interval_37960 chr12 73367242 73368083 + 0 NA intron (ENSMUSG00000056359.6, intron 1 of 2) lincRNA-intron (ENSMUSG00000056359.6, intron 1 of 2) 12581 ENSMUSG00000113425.1 ENSMUSG00000113425 ENSMUST00000222671 Gm48653 lincRNA Interval_101094 chr2 177901473 177903635 + 0 NA TTS (ENSMUSG00000074529.10) protein_coding-TTS (ENSMUSG00000074529.10) 5458 ENSMUSG00000074521.9 ENSMUSG00000074521 ENSMUST00000099001 Gm14327 protein_coding Interval_106751 chr3 100429837 100430505 + 0 NA intron (ENSMUSG00000086923.1, intron 2 of 2) processed_transcript-intron (ENSMUSG00000086923.1, intron 2 of 2) 3732 ENSMUSG00000086923.1 ENSMUSG00000086923 ENSMUST00000152827 4930406D18Rik processed_transcript Interval_31163 chr11 98550783 98551753 + 0 NA promoter-TSS (ENSMUSG00000017195.15) protein_coding-promoter-TSS (ENSMUSG00000017195.15) -4175 ENSMUSG00000017195.15 ENSMUSG00000017195 ENSMUST00000126236 Zpbp2 protein_coding Interval_163501 chr9 21741717 21742084 + 0 NA TTS (ENSMUSG00000032193.9) protein_coding-TTS (ENSMUSG00000032193.9) 5793 ENSMUSG00000032193.9 ENSMUSG00000032193 ENSMUST00000214549 Ldlr protein_coding Interval_119287 chr4 136665684 136666780 + 0 NA intron (ENSMUSG00000028664.14, intron 5 of 5) protein_coding-intron (ENSMUSG00000028664.14, intron 9 of 15) 26650 ENSMUSG00000103119.1 ENSMUSG00000103119 ENSMUST00000195460 Gm37583 TEC Interval_20663 chr10 120104036 120105749 + 0 NA intron (ENSMUSG00000020228.11, intron 4 of 12) protein_coding-intron (ENSMUSG00000020228.11, intron 4 of 12) 7973 ENSMUSG00000020228.11 ENSMUSG00000020228 ENSMUST00000154501 Helb protein_coding Interval_13851 chr10 23894275 23895543 + 0 NA promoter-TSS (ENSMUSG00000037440.8) protein_coding-promoter-TSS (ENSMUSG00000037440.8) 55 ENSMUSG00000037440.8 ENSMUSG00000037440 ENSMUST00000219254 Vnn1 protein_coding Interval_162870 chr9 10844135 10844486 + 0 NA intron (ENSMUSG00000039488.15, intron 1 of 20) protein_coding-intron (ENSMUSG00000039488.15, intron 1 of 24) -60035 ENSMUSG00000109590.1 ENSMUSG00000109590 ENSMUST00000210677 Gm32710 antisense Interval_73842 chr17 44472529 44473466 + 0 NA Intergenic Intergenic -88993 ENSMUSG00000090048.1 ENSMUSG00000090048 ENSMUST00000160203 Runx2os3 antisense Interval_157404 chr8 70152426 70153205 + 0 NA promoter-TSS (ENSMUSG00000079033.10) protein_coding-promoter-TSS (ENSMUSG00000079033.10) 13092 ENSMUSG00000002345.18 ENSMUSG00000002345 ENSMUST00000110139 Borcs8 protein_coding Interval_67818 chr16 57433487 57433793 + 0 NA intron (ENSMUSG00000043336.14, intron 1 of 4) protein_coding-intron (ENSMUSG00000043336.14, intron 1 of 4) 80547 ENSMUSG00000043336.14 ENSMUSG00000043336 ENSMUST00000159414 Filip1l protein_coding Interval_82193 chr18 68753427 68753641 + 0 NA Intergenic Intergenic 14134 ENSMUSG00000099300.1 ENSMUSG00000099300 ENSMUST00000183541 Mir6356 miRNA Interval_69811 chr16 96837362 96837704 + 0 NA intron (ENSMUSG00000050272.10, intron 3 of 32) protein_coding-intron (ENSMUSG00000050272.10, intron 3 of 32) -81199 ENSMUSG00000117324.1 ENSMUSG00000117324 ENSMUST00000232718 Gm32432 antisense Interval_141622 chr6 131405951 131406339 + 0 NA Intergenic Intergenic -25739 ENSMUSG00000065036.1 ENSMUSG00000065036 ENSMUST00000083102 Gm22362 snoRNA Interval_151074 chr7 118342173 118343017 + 0 NA Intergenic Intergenic 13109 ENSMUSG00000108856.1 ENSMUSG00000108856 ENSMUST00000208337 Gm35309 lincRNA Interval_39503 chr12 88766696 88767104 + 0 NA intron (ENSMUSG00000066392.12, intron 1 of 1) protein_coding-intron (ENSMUSG00000066392.12, intron 1 of 3) 134631 ENSMUSG00000113997.1 ENSMUSG00000113997 ENSMUST00000222440 1700040E09Rik lincRNA Interval_92011 chr2 52542592 52543108 + 0 NA intron (ENSMUSG00000017412.15, intron 2 of 13) protein_coding-intron (ENSMUSG00000017412.15, intron 2 of 13) -9119 ENSMUSG00000082132.1 ENSMUSG00000082132 ENSMUST00000119519 Gm13541 processed_pseudogene Interval_168264 chr9 78314133 78314478 + 0 NA promoter-TSS (ENSMUSG00000066463.13) protein_coding-promoter-TSS (ENSMUSG00000066463.13) -304 ENSMUSG00000066463.13 ENSMUSG00000066463 ENSMUST00000085308 Omt2a protein_coding Interval_73215 chr17 35616783 35617636 + 0 NA TTS (ENSMUSG00000090588.2) protein_coding-TTS (ENSMUSG00000090588.2) 9401 ENSMUSG00000090588.2 ENSMUSG00000090588 ENSMUST00000173759 Gm9573 protein_coding Interval_39302 chr12 86535679 86536364 + 0 NA Intergenic Intergenic 65904 ENSMUSG00000021255.17 ENSMUSG00000021255 ENSMUST00000136464 Esrrb protein_coding Interval_14806 chr10 40084518 40084793 + 0 NA intron (ENSMUSG00000019838.11, intron 1 of 2) protein_coding-intron (ENSMUSG00000019838.11, intron 1 of 5) -24807 ENSMUSG00000077200.1 ENSMUSG00000077200 ENSMUST00000104012 Gm25613 snoRNA Interval_166035 chr9 55681088 55681352 + 0 NA intron (ENSMUSG00000034007.10, intron 25 of 32) protein_coding-intron (ENSMUSG00000034007.10, intron 23 of 30) -125508 ENSMUSG00000064472.1 ENSMUSG00000064472 ENSMUST00000082538 Gm23407 snRNA Interval_120577 chr4 149484777 149486094 + 0 NA promoter-TSS (ENSMUSG00000028992.13) protein_coding-promoter-TSS (ENSMUSG00000028992.13) 102 ENSMUSG00000028990.13 ENSMUSG00000028990 ENSMUST00000146427 Lzic protein_coding Interval_6306 chr1 105758726 105759779 + 0 NA Intergenic Intergenic -5192 ENSMUSG00000101330.1 ENSMUSG00000101330 ENSMUST00000188288 Gm10193 processed_pseudogene Interval_104525 chr3 67439984 67440416 + 0 NA exon (ENSMUSG00000027774.16, exon 6 of 18) protein_coding-exon (ENSMUSG00000027774.16, exon 6 of 18) 10084 ENSMUSG00000027774.16 ENSMUSG00000027774 ENSMUST00000160529 Gfm1 protein_coding Interval_149342 chr7 97578844 97581379 + 0 NA promoter-TSS (ENSMUSG00000035642.16) protein_coding-promoter-TSS (ENSMUSG00000035642.16) -1884 ENSMUSG00000035642.16 ENSMUSG00000035642 ENSMUST00000205430 Aamdc protein_coding Interval_124721 chr5 53554263 53556405 + 0 NA promoter-TSS (ENSMUSG00000039191.12) protein_coding-promoter-TSS (ENSMUSG00000039191.12) -8012 ENSMUSG00000107111.1 ENSMUSG00000107111 ENSMUST00000202154 Gm40304 antisense Interval_65309 chr16 21418090 21418330 + 0 NA Intergenic Intergenic -85081 ENSMUSG00000116632.1 ENSMUSG00000116632 ENSMUST00000231972 Magef1 transcribed_processed_pseudogene Interval_96277 chr2 121194825 121195584 + 0 NA TTS (ENSMUSG00000027263.12) protein_coding-TTS (ENSMUSG00000027263.12) 23995 ENSMUSG00000027263.12 ENSMUSG00000027263 ENSMUST00000154318 Tubgcp4 protein_coding Interval_109373 chr3 140725841 140726841 + 0 NA intron (ENSMUSG00000105777.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000105777.1, intron 1 of 2) 34363 ENSMUSG00000105777.1 ENSMUSG00000105777 ENSMUST00000198099 Gm43049 lincRNA Interval_49816 chr13 116405096 116405353 + 0 NA Intergenic Intergenic -43530 ENSMUSG00000114451.1 ENSMUSG00000114451 ENSMUST00000225190 Gm47912 processed_pseudogene Interval_125337 chr5 66280684 66281014 + 0 NA intron (ENSMUSG00000029206.13, intron 7 of 10) protein_coding-intron (ENSMUSG00000029206.13, intron 7 of 12) 20952 ENSMUSG00000029206.13 ENSMUSG00000029206 ENSMUST00000031109 Nsun7 protein_coding Interval_151824 chr7 126907627 126907818 + 0 NA intron (ENSMUSG00000060538.14, intron 1 of 4) protein_coding-intron (ENSMUSG00000060538.14, intron 1 of 6) 8104 ENSMUSG00000064734.1 ENSMUSG00000064734 ENSMUST00000082800 Gm23445 snRNA Interval_13392 chr10 17733210 17733862 + 0 NA Intergenic Intergenic 10303 ENSMUSG00000039910.10 ENSMUSG00000039910 ENSMUST00000218370 Cited2 protein_coding Interval_122516 chr5 23531492 23532260 + 0 NA intron (ENSMUSG00000062604.11, intron 2 of 3) protein_coding-intron (ENSMUSG00000062604.11, intron 6 of 14) 10242 ENSMUSG00000062604.11 ENSMUSG00000062604 ENSMUST00000196592 Srpk2 protein_coding Interval_160171 chr8 106920268 106920613 + 0 NA intron (ENSMUSG00000041438.8, intron 13 of 14) protein_coding-intron (ENSMUSG00000041438.8, intron 15 of 16) 7973 ENSMUSG00000074108.1 ENSMUSG00000074108 ENSMUST00000098432 Rpl10-ps2 processed_pseudogene Interval_9821 chr1 162676294 162677403 + 0 NA intron (ENSMUSG00000040225.15, intron 15 of 16) protein_coding-intron (ENSMUSG00000040225.15, intron 32 of 34) -2628 ENSMUSG00000098259.1 ENSMUSG00000098259 ENSMUST00000184547 Gm27616 miRNA Interval_124440 chr5 47237576 47237881 + 0 NA Intergenic Intergenic 84077 ENSMUSG00000104660.1 ENSMUSG00000104660 ENSMUST00000196294 Gm43601 TEC Interval_64811 chr16 16085935 16087044 + 0 NA intron (ENSMUSG00000041974.10, intron 5 of 16) protein_coding-intron (ENSMUSG00000041974.10, intron 5 of 19) -13109 ENSMUSG00000116385.1 ENSMUSG00000116385 ENSMUST00000230117 Gm18334 processed_pseudogene Interval_131288 chr5 136179472 136180305 + 0 NA exon (ENSMUSG00000039737.11, exon 6 of 6) protein_coding-exon (ENSMUSG00000039737.11, exon 6 of 6) -9255 ENSMUSG00000039747.11 ENSMUSG00000039747 ENSMUST00000198268 Orai2 protein_coding Interval_141882 chr6 135087074 135088157 + 0 NA Intergenic Intergenic 21964 ENSMUSG00000046733.7 ENSMUSG00000046733 ENSMUST00000050104 Gprc5a protein_coding Interval_136196 chr6 51947275 51948291 + 0 NA intron (ENSMUSG00000059182.7, intron 4 of 12) protein_coding-intron (ENSMUSG00000059182.7, intron 4 of 12) -64818 ENSMUSG00000108244.1 ENSMUSG00000108244 ENSMUST00000203453 Gm44077 lincRNA Interval_113378 chr4 53951905 53953104 + 0 NA Intergenic Intergenic 46808 ENSMUSG00000077418.1 ENSMUSG00000077418 ENSMUST00000104230 Gm23745 snoRNA Interval_7531 chr1 132040244 132040463 + 0 NA TTS (ENSMUSG00000059149.17) protein_coding-TTS (ENSMUSG00000059149.17) 1563 ENSMUSG00000059149.17 ENSMUSG00000059149 ENSMUST00000162628 Mfsd4a protein_coding Interval_68064 chr16 64817492 64817708 + 0 NA intron (ENSMUSG00000047141.5, intron 2 of 8) protein_coding-intron (ENSMUSG00000047141.5, intron 2 of 8) 34052 ENSMUSG00000047141.5 ENSMUSG00000047141 ENSMUST00000052588 Zfp654 protein_coding Interval_135204 chr6 37470312 37470938 + 0 NA Intergenic Intergenic -69056 ENSMUSG00000038641.12 ENSMUSG00000038641 ENSMUST00000123648 Akr1d1 protein_coding Interval_24465 chr11 33466130 33466441 + 0 NA intron (ENSMUSG00000040594.19, intron 12 of 20) protein_coding-intron (ENSMUSG00000040594.19, intron 12 of 27) -13771 ENSMUSG00000040594.19 ENSMUSG00000040594 ENSMUST00000147751 Ranbp17 protein_coding Interval_93229 chr2 71328504 71329088 + 0 NA promoter-TSS (ENSMUSG00000027010.16) protein_coding-promoter-TSS (ENSMUSG00000027010.16) 9013 ENSMUSG00000082190.1 ENSMUSG00000082190 ENSMUST00000117993 Gm13641 processed_pseudogene Interval_169020 chr9 90233768 90234578 + 0 NA intron (ENSMUSG00000037410.13, intron 4 of 4) protein_coding-intron (ENSMUSG00000037410.13, intron 3 of 12) -12548 ENSMUSG00000081520.1 ENSMUSG00000081520 ENSMUST00000120385 Gm16200 processed_pseudogene Interval_43171 chr13 24830890 24832397 + 0 NA promoter-TSS (ENSMUSG00000006717.7) protein_coding-promoter-TSS (ENSMUSG00000006717.7) -38 ENSMUSG00000035958.3 ENSMUSG00000035958 ENSMUST00000224542 Tdp2 protein_coding Interval_921 chr1 13189124 13189348 + 0 NA TTS (ENSMUSG00000005886.14) protein_coding-TTS (ENSMUSG00000005886.14) -9522 ENSMUSG00000103506.1 ENSMUSG00000103506 ENSMUST00000195493 Gm38376 TEC Interval_34657 chr12 8432172 8433206 + 0 NA Intergenic Intergenic 22229 ENSMUSG00000112664.1 ENSMUSG00000112664 ENSMUST00000219269 Gm48076 TEC Interval_140956 chr6 123028874 123029429 + 0 NA Intergenic Intergenic -20847 ENSMUSG00000030147.12 ENSMUSG00000030147 ENSMUST00000078559 Clec4b1 protein_coding Interval_92340 chr2 59142209 59142815 + 0 NA intron (ENSMUSG00000036641.9, intron 1 of 14) protein_coding-intron (ENSMUSG00000036641.9, intron 1 of 14) 6111 ENSMUSG00000084250.1 ENSMUSG00000084250 ENSMUST00000118185 Gm13550 processed_pseudogene Interval_102573 chr3 27924741 27924991 + 0 NA Intergenic Intergenic -28498 ENSMUSG00000043164.3 ENSMUSG00000043164 ENSMUST00000058077 Tmem212 protein_coding Interval_124469 chr5 48504141 48505297 + 0 NA intron (ENSMUSG00000029088.16, intron 1 of 7) protein_coding-intron (ENSMUSG00000029088.16, intron 2 of 8) 33222 ENSMUSG00000105653.1 ENSMUSG00000105653 ENSMUST00000200461 Gm43831 TEC Interval_119674 chr4 139145114 139146127 + 0 NA Intergenic Intergenic -4577 ENSMUSG00000083238.1 ENSMUSG00000083238 ENSMUST00000119538 Hspe1-ps4 processed_pseudogene Interval_91918 chr2 51447396 51448868 + 0 NA Intergenic Intergenic -10232 ENSMUSG00000086007.1 ENSMUSG00000086007 ENSMUST00000154530 1700057H21Rik lincRNA Interval_170740 chr9 110455391 110455659 + 0 NA promoter-TSS (ENSMUSG00000054792.15) protein_coding-promoter-TSS (ENSMUSG00000054792.15) -124 ENSMUSG00000054792.15 ENSMUSG00000054792 ENSMUST00000198327 Klhl18 protein_coding Interval_4990 chr1 83736101 83737156 + 0 NA intron (ENSMUSG00000100580.6, intron 3 of 4) lincRNA-intron (ENSMUSG00000100580.6, intron 3 of 4) -59284 ENSMUSG00000094946.1 ENSMUSG00000094946 ENSMUST00000178653 Gm25754 miRNA Interval_141723 chr6 134041781 134042302 + 0 NA intron (ENSMUSG00000030199.16, intron 1 of 4) protein_coding-intron (ENSMUSG00000030199.16, intron 1 of 7) -31313 ENSMUSG00000108214.1 ENSMUSG00000108214 ENSMUST00000204995 Gm43982 TEC Interval_102884 chr3 32521509 32522487 + 0 NA Intergenic Intergenic -9654 ENSMUSG00000104231.1 ENSMUSG00000104231 ENSMUST00000192741 Gm37592 antisense Interval_87084 chr19 46028488 46029666 + 0 NA Intergenic Intergenic 16134 ENSMUSG00000025223.15 ENSMUSG00000025223 ENSMUST00000136203 Ldb1 protein_coding Interval_41086 chr12 111082791 111083281 + 0 NA intron (ENSMUSG00000037896.17, intron 3 of 11) protein_coding-intron (ENSMUSG00000037896.17, intron 3 of 11) -8164 ENSMUSG00000113200.1 ENSMUSG00000113200 ENSMUST00000221105 Gm48632 TEC Interval_81049 chr18 53316664 53317069 + 0 NA intron (ENSMUSG00000024535.16, intron 2 of 3) protein_coding-intron (ENSMUSG00000024535.16, intron 1 of 7) 71138 ENSMUSG00000024535.16 ENSMUSG00000024535 ENSMUST00000025417 Snx24 protein_coding Interval_148987 chr7 90799489 90799734 + 0 NA intron (ENSMUSG00000052572.19, intron 4 of 27) protein_coding-intron (ENSMUSG00000052572.19, intron 4 of 27) 12550 ENSMUSG00000109074.1 ENSMUSG00000109074 ENSMUST00000209013 Gm45162 processed_pseudogene Interval_92967 chr2 69039895 69040363 + 0 NA intron (ENSMUSG00000027035.10, intron 4 of 10) protein_coding-intron (ENSMUSG00000027035.10, intron 4 of 9) 22033 ENSMUSG00000102662.1 ENSMUSG00000102662 ENSMUST00000193253 Gm38377 TEC Interval_78971 chr18 23415307 23415523 + 0 NA promoter-TSS (ENSMUSG00000024302.16) protein_coding-promoter-TSS (ENSMUSG00000024302.16) -81420 ENSMUSG00000024302.16 ENSMUSG00000024302 ENSMUST00000222726 Dtna protein_coding Interval_90594 chr2 31328003 31328743 + 0 NA intron (ENSMUSG00000055632.18, intron 1 of 97) protein_coding-intron (ENSMUSG00000055632.18, intron 1 of 97) 13958 ENSMUSG00000055632.18 ENSMUSG00000055632 ENSMUST00000141294 Hmcn2 protein_coding Interval_40679 chr12 107033259 107033567 + 0 NA Intergenic Intergenic 66260 ENSMUSG00000085120.1 ENSMUSG00000085120 ENSMUST00000143652 Gm16086 lincRNA Interval_117256 chr4 121039512 121041510 + 0 NA intron (ENSMUSG00000028626.5, intron 1 of 6) protein_coding-intron (ENSMUSG00000028626.5, intron 1 of 31) 763 ENSMUSG00000028626.5 ENSMUSG00000028626 ENSMUST00000140119 Col9a2 protein_coding Interval_48288 chr13 97781844 97782495 + 0 NA Intergenic Intergenic -8395 ENSMUSG00000114294.1 ENSMUSG00000114294 ENSMUST00000225757 Gm47577 TEC Interval_112959 chr4 46466365 46466586 + 0 NA intron (ENSMUSG00000028333.10, intron 3 of 6) protein_coding-intron (ENSMUSG00000028333.10, intron 3 of 6) 15573 ENSMUSG00000028333.10 ENSMUSG00000028333 ENSMUST00000102926 Anp32b protein_coding Interval_97233 chr2 132454922 132455591 + 0 NA Intergenic Intergenic 30515 ENSMUSG00000027345.6 ENSMUSG00000027345 ENSMUST00000124095 4921508D12Rik lincRNA Interval_6098 chr1 96848853 96849173 + 0 NA intron (ENSMUSG00000040693.7, intron 2 of 12) protein_coding-intron (ENSMUSG00000040693.7, intron 2 of 12) 23158 ENSMUSG00000040693.7 ENSMUSG00000040693 ENSMUST00000071985 Slco4c1 protein_coding Interval_154279 chr8 13985956 13988857 + 0 NA intron (ENSMUSG00000110058.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000110058.1, intron 1 of 2) -11534 ENSMUSG00000110058.1 ENSMUSG00000110058 ENSMUST00000210969 Gm5907 lincRNA Interval_41778 chr12 119029447 119029860 + 0 NA Intergenic Intergenic 37777 ENSMUSG00000114030.1 ENSMUSG00000114030 ENSMUST00000221798 Gm18921 processed_pseudogene Interval_36225 chr12 39984543 39985945 + 0 NA Intergenic Intergenic -34612 ENSMUSG00000114147.1 ENSMUSG00000114147 ENSMUST00000222820 Gm18939 transcribed_processed_pseudogene Interval_106011 chr3 90623658 90623894 + 0 NA exon (ENSMUSG00000001025.8, exon 3 of 3) protein_coding-exon (ENSMUSG00000001025.8, exon 3 of 3) 10016 ENSMUSG00000001025.8 ENSMUSG00000001025 ENSMUST00000200289 S100a6 protein_coding Interval_60986 chr15 78529191 78529933 + 0 NA promoter-TSS (ENSMUSG00000022440.9) protein_coding-promoter-TSS (ENSMUSG00000022440.9) -1547 ENSMUSG00000116307.1 ENSMUSG00000116307 ENSMUST00000230340 Gm49490 antisense Interval_22648 chr11 12466906 12468026 + 0 NA Intergenic Intergenic -55322 ENSMUSG00000020173.17 ENSMUSG00000020173 ENSMUST00000146067 Cobl protein_coding Interval_74247 chr17 47702336 47703893 + 0 NA exon (ENSMUSG00000023266.11, exon 7 of 7) protein_coding-exon (ENSMUSG00000023266.11, exon 7 of 7) -2285 ENSMUSG00000086930.1 ENSMUSG00000086930 ENSMUST00000143962 Frs3os antisense Interval_30982 chr11 97570442 97571091 + 0 NA intron (ENSMUSG00000038453.17, intron 1 of 1) protein_coding-intron (ENSMUSG00000038453.17, intron 1 of 17) 4460 ENSMUSG00000038453.17 ENSMUSG00000038453 ENSMUST00000145845 Srcin1 protein_coding Interval_105246 chr3 84180443 84182258 + 0 NA intron (ENSMUSG00000027993.16, intron 1 of 2) protein_coding-intron (ENSMUSG00000027993.16, intron 6 of 11) 7246 ENSMUSG00000104043.1 ENSMUSG00000104043 ENSMUST00000193882 Gm6525 protein_coding Interval_108300 chr3 123440749 123442022 + 0 NA Intergenic Intergenic -5528 ENSMUSG00000027978.9 ENSMUSG00000027978 ENSMUST00000029603 Prss12 protein_coding Interval_57019 chr15 4356397 4356668 + 0 NA Intergenic Intergenic -18959 ENSMUSG00000049148.8 ENSMUSG00000049148 ENSMUST00000061925 Plcxd3 protein_coding Interval_166948 chr9 64094482 64095607 + 0 NA Intergenic Intergenic 14283 ENSMUSG00000093759.1 ENSMUSG00000093759 ENSMUST00000176950 Scarletltr processed_transcript Interval_137287 chr6 71074874 71075073 + 0 NA Intergenic Intergenic 31538 ENSMUSG00000107446.1 ENSMUSG00000107446 ENSMUST00000203194 Gm43906 TEC Interval_19570 chr10 103376169 103376807 + 0 NA intron (ENSMUSG00000019894.14, intron 2 of 12) protein_coding-intron (ENSMUSG00000019894.14, intron 2 of 12) -16962 ENSMUSG00000019894.14 ENSMUSG00000019894 ENSMUST00000219936 Slc6a15 protein_coding Interval_68776 chr16 86118195 86119387 + 0 NA Intergenic Intergenic 31885 ENSMUSG00000116556.1 ENSMUSG00000116556 ENSMUST00000231250 1700007H22Rik lincRNA Interval_148954 chr7 90346681 90347583 + 0 NA intron (ENSMUSG00000030616.16, intron 1 of 6) protein_coding-intron (ENSMUSG00000030616.16, intron 1 of 6) -1567 ENSMUSG00000030616.16 ENSMUSG00000030616 ENSMUST00000189194 Sytl2 protein_coding Interval_136053 chr6 50348759 50348967 + 0 NA intron (ENSMUSG00000029822.15, intron 5 of 5) protein_coding-intron (ENSMUSG00000029822.15, intron 6 of 21) 3094 ENSMUSG00000029822.15 ENSMUSG00000029822 ENSMUST00000154333 Osbpl3 protein_coding Interval_150977 chr7 117138781 117139004 + 0 NA Intergenic Intergenic -90715 ENSMUSG00000108303.1 ENSMUSG00000108303 ENSMUST00000206031 Gm39075 lincRNA Interval_115693 chr4 102290644 102290850 + 0 NA intron (ENSMUSG00000028525.16, intron 1 of 14) protein_coding-intron (ENSMUSG00000028525.16, intron 1 of 5) 35517 ENSMUSG00000028525.16 ENSMUSG00000028525 ENSMUST00000106901 Pde4b protein_coding Interval_170073 chr9 104242618 104242836 + 0 NA intron (ENSMUSG00000032560.14, intron 2 of 3) protein_coding-intron (ENSMUSG00000032560.14, intron 2 of 55) -19378 ENSMUSG00000104040.1 ENSMUSG00000104040 ENSMUST00000192580 Gm37563 TEC Interval_100737 chr2 172241171 172241395 + 0 NA Intergenic Intergenic -7209 ENSMUSG00000038537.1 ENSMUSG00000038537 ENSMUST00000038532 Mc3r protein_coding Interval_133983 chr6 17316014 17316237 + 0 NA intron (ENSMUSG00000007655.16, intron 2 of 2) protein_coding-intron (ENSMUSG00000007655.16, intron 2 of 2) 9714 ENSMUSG00000007655.16 ENSMUSG00000007655 ENSMUST00000133065 Cav1 protein_coding Interval_104375 chr3 64449120 64449547 + 0 NA intron (ENSMUSG00000093671.1, intron 1 of 3) unprocessed_pseudogene-intron (ENSMUSG00000093671.1, intron 1 of 3) 1366 ENSMUSG00000093671.1 ENSMUSG00000093671 ENSMUST00000176925 Gm20656 unprocessed_pseudogene Interval_98033 chr2 146958861 146960026 + 0 NA intron (ENSMUSG00000074749.10, intron 2 of 3) protein_coding-intron (ENSMUSG00000074749.10, intron 12 of 13) -70109 ENSMUSG00000027433.5 ENSMUSG00000027433 ENSMUST00000137358 Xrn2 protein_coding Interval_70162 chr17 5892267 5892507 + 0 NA intron (ENSMUSG00000002365.10, intron 4 of 17) protein_coding-intron (ENSMUSG00000002365.10, intron 4 of 17) -46700 ENSMUSG00000116734.1 ENSMUSG00000116734 ENSMUST00000231634 Gm8376 processed_pseudogene Interval_152340 chr7 132031159 132031516 + 0 NA intron (ENSMUSG00000030849.18, intron 2 of 6) protein_coding-intron (ENSMUSG00000030849.18, intron 2 of 6) 17781 ENSMUSG00000030862.13 ENSMUSG00000030862 ENSMUST00000136188 Cpxm2 protein_coding Interval_1688 chr1 31154189 31154436 + 0 NA intron (ENSMUSG00000086727.8, intron 2 of 2) protein_coding-intron (ENSMUSG00000086727.8, intron 2 of 2) -10237 ENSMUSG00000099796.1 ENSMUSG00000099796 ENSMUST00000189666 Gm7893 processed_pseudogene Interval_25536 chr11 49636231 49637430 + 0 NA intron (ENSMUSG00000020357.3, intron 19 of 29) protein_coding-intron (ENSMUSG00000020357.3, intron 19 of 29) -26780 ENSMUSG00000064057.12 ENSMUSG00000064057 ENSMUST00000076006 Scgb3a1 protein_coding Interval_77594 chr17 92651635 92652547 + 0 NA Intergenic Intergenic -51565 ENSMUSG00000117354.1 ENSMUSG00000117354 ENSMUST00000234942 Gm49995 processed_pseudogene Interval_8732 chr1 150177207 150177638 + 0 NA Intergenic Intergenic -12474 ENSMUSG00000097754.1 ENSMUSG00000097754 ENSMUST00000181308 Ptgs2os2 lincRNA Interval_119862 chr4 140554317 140556139 + 0 NA intron (ENSMUSG00000040964.16, intron 4 of 7) protein_coding-intron (ENSMUSG00000040964.16, intron 20 of 27) 61837 ENSMUSG00000040964.16 ENSMUSG00000040964 ENSMUST00000154979 Arhgef10l protein_coding Interval_150548 chr7 112309244 112309471 + 0 NA intron (ENSMUSG00000038244.14, intron 5 of 17) protein_coding-intron (ENSMUSG00000038244.14, intron 3 of 23) -40037 ENSMUSG00000038244.14 ENSMUSG00000038244 ENSMUST00000140202 Mical2 protein_coding Interval_102764 chr3 30873179 30873709 + 0 NA intron (ENSMUSG00000037661.14, intron 1 of 3) protein_coding-intron (ENSMUSG00000037661.14, intron 1 of 3) 17451 ENSMUSG00000037661.14 ENSMUSG00000037661 ENSMUST00000147697 Gpr160 protein_coding Interval_162828 chr9 9835966 9836758 + 0 NA intron (ENSMUSG00000039488.15, intron 7 of 18) protein_coding-intron (ENSMUSG00000039488.15, intron 11 of 22) -58069 ENSMUSG00000098408.1 ENSMUSG00000098408 ENSMUST00000183808 Mir6237 miRNA Interval_145973 chr7 42764840 42765087 + 0 NA exon (ENSMUSG00000091926.3, exon 6 of 6) protein_coding-exon (ENSMUSG00000091926.3, exon 6 of 6) 14549 ENSMUSG00000092238.1 ENSMUSG00000092238 ENSMUST00000173237 Gm6004 processed_pseudogene Interval_149011 chr7 91786140 91786841 + 0 NA intron (ENSMUSG00000052572.19, intron 2 of 3) protein_coding-intron (ENSMUSG00000052572.19, intron 3 of 22) -29677 ENSMUSG00000109481.1 ENSMUSG00000109481 ENSMUST00000207574 Gm45130 TEC Interval_80629 chr18 44811570 44812529 + 0 NA exon (ENSMUSG00000071856.10, exon 1 of 19) protein_coding-exon (ENSMUSG00000071856.10, exon 1 of 19) -9084 ENSMUSG00000117832.1 ENSMUSG00000117832 ENSMUST00000237858 Gm50263 processed_pseudogene Interval_36045 chr12 33659828 33660211 + 0 NA Intergenic Intergenic -163122 ENSMUSG00000112076.1 ENSMUSG00000112076 ENSMUST00000219348 Gm9368 processed_pseudogene Interval_154342 chr8 14852584 14852810 + 0 NA Intergenic Intergenic -36307 ENSMUSG00000026317.7 ENSMUSG00000026317 ENSMUST00000128839 Cln8 protein_coding Interval_45525 chr13 55657944 55658297 + 0 NA intron (ENSMUSG00000021500.17, intron 11 of 15) protein_coding-intron (ENSMUSG00000021500.17, intron 11 of 21) -11644 ENSMUSG00000021500.17 ENSMUSG00000021500 ENSMUST00000231097 Ddx46 protein_coding Interval_126007 chr5 76798576 76800099 + 0 NA intron (ENSMUSG00000036377.19, intron 3 of 11) protein_coding-intron (ENSMUSG00000036377.19, intron 2 of 10) -56824 ENSMUSG00000083874.1 ENSMUSG00000083874 ENSMUST00000121248 Gm7494 processed_pseudogene Interval_141377 chr6 127820741 127821107 + 0 NA Intergenic Intergenic -10206 ENSMUSG00000106862.1 ENSMUSG00000106862 ENSMUST00000201951 Gm42811 TEC Interval_1216 chr1 17223929 17224212 + 0 NA Intergenic Intergenic 26422 ENSMUSG00000100272.1 ENSMUSG00000100272 ENSMUST00000187478 Gm28785 processed_pseudogene Interval_152200 chr7 130599750 130601297 + 0 NA intron (ENSMUSG00000030852.18, intron 1 of 4) protein_coding-intron (ENSMUSG00000030852.18, intron 1 of 20) 53869 ENSMUSG00000109225.1 ENSMUSG00000109225 ENSMUST00000207466 4930513N20Rik TEC Interval_14421 chr10 33412171 33412591 + 0 NA exon (ENSMUSG00000112521.1, exon 1 of 1) processed_pseudogene-exon (ENSMUSG00000112521.1, exon 1 of 1) 305 ENSMUSG00000112521.1 ENSMUSG00000112521 ENSMUST00000218403 Gm29884 processed_pseudogene Interval_142239 chr6 139631391 139631744 + 0 NA intron (ENSMUSG00000030228.18, intron 5 of 6) protein_coding-intron (ENSMUSG00000030228.18, intron 3 of 4) -54362 ENSMUSG00000108147.1 ENSMUSG00000108147 ENSMUST00000203475 4930443G03Rik TEC Interval_112830 chr4 45360381 45360698 + 0 NA intron (ENSMUSG00000035572.16, intron 3 of 6) protein_coding-intron (ENSMUSG00000035572.16, intron 4 of 7) -17807 ENSMUSG00000028322.11 ENSMUSG00000028322 ENSMUST00000130843 Exosc3 protein_coding Interval_90339 chr2 29855820 29857046 + 0 NA Intergenic Intergenic -10706 ENSMUSG00000065485.1 ENSMUSG00000065485 ENSMUST00000083551 Mir219a-2 miRNA Interval_170678 chr9 110050672 110052785 + 0 NA promoter-TSS (ENSMUSG00000032479.15) protein_coding-promoter-TSS (ENSMUSG00000032479.15) 10548 ENSMUSG00000105962.1 ENSMUSG00000105962 ENSMUST00000197902 Gm42432 TEC Interval_80924 chr18 50220667 50221305 + 0 NA promoter-TSS (ENSMUSG00000098058.1) processed_pseudogene-promoter-TSS (ENSMUSG00000098058.1) -171 ENSMUSG00000098058.1 ENSMUSG00000098058 ENSMUST00000183298 Gm8529 processed_pseudogene Interval_111534 chr4 22620481 22620943 + 0 NA Intergenic Intergenic -83345 ENSMUSG00000080762.1 ENSMUSG00000080762 ENSMUST00000121885 Gm11879 processed_pseudogene Interval_19375 chr10 98550819 98551202 + 0 NA intron (ENSMUSG00000112874.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000112874.1, intron 1 of 3) 13528 ENSMUSG00000112874.1 ENSMUSG00000112874 ENSMUST00000220028 Gm34297 lincRNA Interval_122490 chr5 23413022 23413768 + 0 NA intron (ENSMUSG00000073147.3, intron 1 of 4) lincRNA-intron (ENSMUSG00000073147.3, intron 1 of 6) 17292 ENSMUSG00000105042.1 ENSMUSG00000105042 ENSMUST00000197390 Gm42509 TEC Interval_94726 chr2 93810143 93810412 + 0 NA intron (ENSMUSG00000027198.16, intron 4 of 11) protein_coding-intron (ENSMUSG00000027198.16, intron 3 of 13) 12272 ENSMUSG00000027198.16 ENSMUSG00000027198 ENSMUST00000125027 Ext2 protein_coding Interval_172077 chrX 6279353 6279588 + 0 NA Intergenic Intergenic 41251 ENSMUSG00000023279.7 ENSMUSG00000023279 ENSMUST00000024049 Bmp15 protein_coding Interval_65297 chr16 21321333 21322782 + 0 NA Intergenic Intergenic 11072 ENSMUSG00000116632.1 ENSMUSG00000116632 ENSMUST00000231972 Magef1 transcribed_processed_pseudogene Interval_69149 chr16 90985121 90985450 + 0 NA intron (ENSMUSG00000085279.1, intron 1 of 1) protein_coding-intron (ENSMUSG00000022973.18, intron 6 of 18) 1378 ENSMUSG00000085279.1 ENSMUSG00000085279 ENSMUST00000123318 Gm15965 antisense Interval_27749 chr11 69777218 69777429 + 0 NA intron (ENSMUSG00000018750.14, intron 2 of 2) protein_coding-intron (ENSMUSG00000018750.14, intron 2 of 2) 11307 ENSMUSG00000018750.14 ENSMUSG00000018750 ENSMUST00000108638 Zbtb4 protein_coding Interval_171133 chr9 114695110 114695987 + 0 NA intron (ENSMUSG00000032435.9, intron 2 of 2) protein_coding-intron (ENSMUSG00000032435.9, intron 2 of 12) 6758 ENSMUSG00000032435.9 ENSMUSG00000032435 ENSMUST00000047404 Dync1li1 protein_coding Interval_72881 chr17 32895325 32896626 + 0 NA Intergenic Intergenic -4442 ENSMUSG00000095325.3 ENSMUSG00000095325 ENSMUST00000228410 Zfp870 protein_coding Interval_166350 chr9 58515322 58515726 + 0 NA Intergenic Intergenic 25190 ENSMUSG00000035914.11 ENSMUSG00000035914 ENSMUST00000213722 Cd276 protein_coding Interval_107479 chr3 107982949 107983149 + 0 NA intron (ENSMUSG00000040562.12, intron 7 of 7) protein_coding-intron (ENSMUSG00000040562.12, intron 7 of 7) 3372 ENSMUSG00000040562.12 ENSMUSG00000040562 ENSMUST00000150808 Gstm2 protein_coding Interval_56462 chr14 118918917 118919430 + 0 NA intron (ENSMUSG00000042156.16, intron 2 of 20) protein_coding-intron (ENSMUSG00000042156.16, intron 4 of 21) -18803 ENSMUSG00000022136.8 ENSMUSG00000022136 ENSMUST00000022734 Dnajc3 protein_coding Interval_18988 chr10 93594033 93594622 + 0 NA intron (ENSMUSG00000097407.1, intron 1 of 3) lincRNA-intron (ENSMUSG00000097407.1, intron 1 of 3) -4621 ENSMUSG00000020018.6 ENSMUSG00000020018 ENSMUST00000020203 Snrpf protein_coding Interval_42542 chr13 15019128 15020151 + 0 NA Intergenic Intergenic 76495 ENSMUSG00000114176.1 ENSMUSG00000114176 ENSMUST00000221755 Gm48329 processed_pseudogene Interval_113256 chr4 52452973 52453669 + 0 NA intron (ENSMUSG00000028312.19, intron 9 of 10) protein_coding-intron (ENSMUSG00000028312.19, intron 9 of 24) -9149 ENSMUSG00000084380.1 ENSMUSG00000084380 ENSMUST00000117819 Tmc4-ps processed_pseudogene Interval_173595 chrX 100520642 100520941 + 0 NA Intergenic Intergenic -4047 ENSMUSG00000067597.5 ENSMUSG00000067597 ENSMUST00000037541 Dgat2l6 protein_coding Interval_72727 chr17 31782444 31784007 + 0 NA Intergenic Intergenic -6301 ENSMUSG00000117355.1 ENSMUSG00000117355 ENSMUST00000234824 Gm49999 lincRNA Interval_131287 chr5 136178249 136178489 + 0 NA exon (ENSMUSG00000039737.11, exon 6 of 6) protein_coding-exon (ENSMUSG00000039737.11, exon 6 of 6) -7736 ENSMUSG00000039747.11 ENSMUSG00000039747 ENSMUST00000198268 Orai2 protein_coding Interval_161491 chr8 120701673 120702085 + 0 NA intron (ENSMUSG00000092329.1, intron 1 of 15) protein_coding-intron (ENSMUSG00000092329.1, intron 1 of 15) 15875 ENSMUSG00000088416.1 ENSMUSG00000088416 ENSMUST00000157791 Gm24239 misc_RNA Interval_162979 chr9 14070309 14072005 + 0 NA Intergenic Intergenic -18463 ENSMUSG00000111489.1 ENSMUSG00000111489 ENSMUST00000214881 1700019J19Rik lincRNA Interval_50458 chr14 13637235 13637496 + 0 NA Intergenic Intergenic -33511 ENSMUSG00000044772.2 ENSMUSG00000044772 ENSMUST00000061045 Sntn protein_coding Interval_125778 chr5 74076595 74079751 + 0 NA Intergenic Intergenic -14887 ENSMUSG00000106943.2 ENSMUSG00000106943 ENSMUST00000117249 Dancr processed_transcript Interval_106607 chr3 97702953 97703162 + 0 NA intron (ENSMUSG00000038170.15, intron 35 of 45) protein_coding-intron (ENSMUSG00000038170.15, intron 36 of 46) -12495 ENSMUSG00000098381.1 ENSMUSG00000098381 ENSMUST00000184178 Mir7225 miRNA Interval_53962 chr14 63848193 63848561 + 0 NA Intergenic Intergenic -51392 ENSMUSG00000021958.5 ENSMUSG00000021958 ENSMUST00000225564 Pinx1 protein_coding Interval_124197 chr5 39974851 39975174 + 0 NA TTS (ENSMUSG00000107070.1) lincRNA-TTS (ENSMUSG00000107070.1) 10616 ENSMUSG00000107070.1 ENSMUSG00000107070 ENSMUST00000200925 Gm35191 lincRNA Interval_16009 chr10 60098622 60099006 + 0 NA intron (ENSMUSG00000044475.14, intron 10 of 10) protein_coding-intron (ENSMUSG00000044475.14, intron 10 of 10) -7654 ENSMUSG00000058297.16 ENSMUSG00000058297 ENSMUST00000165024 Spock2 protein_coding Interval_89859 chr2 26056967 26057191 + 0 NA exon (ENSMUSG00000026932.14, exon 6 of 6) protein_coding-exon (ENSMUSG00000026932.14, exon 6 of 6) -1931 ENSMUSG00000087515.1 ENSMUSG00000087515 ENSMUST00000137349 Gm13554 antisense Interval_110565 chr4 3944706 3945183 + 0 NA intron (ENSMUSG00000042198.12, intron 1 of 2) protein_coding-intron (ENSMUSG00000042198.12, intron 1 of 2) -1864 ENSMUSG00000042198.12 ENSMUSG00000042198 ENSMUST00000151519 Chchd7 protein_coding Interval_76257 chr17 78562861 78563280 + 0 NA intron (ENSMUSG00000024076.10, intron 3 of 13) protein_coding-intron (ENSMUSG00000024076.10, intron 3 of 13) -10858 ENSMUSG00000024076.10 ENSMUSG00000024076 ENSMUST00000232864 Vit protein_coding Interval_8515 chr1 140500356 140500649 + 0 NA intron (ENSMUSG00000052726.16, intron 14 of 26) protein_coding-intron (ENSMUSG00000052726.16, intron 14 of 26) 155902 ENSMUSG00000102368.1 ENSMUSG00000102368 ENSMUST00000193820 4930590L20Rik antisense Interval_136399 chr6 54119953 54120698 + 0 NA intron (ENSMUSG00000004633.17, intron 1 of 5) protein_coding-intron (ENSMUSG00000004633.17, intron 1 of 12) 30612 ENSMUSG00000087670.1 ENSMUSG00000087670 ENSMUST00000138767 9530036M11Rik antisense Interval_5674 chr1 90837847 90838641 + 0 NA exon (ENSMUSG00000103061.1, exon 1 of 1) TEC-exon (ENSMUSG00000103061.1, exon 1 of 1) 889 ENSMUSG00000103061.1 ENSMUSG00000103061 ENSMUST00000193688 Gm36970 TEC Interval_105072 chr3 80969382 80969589 + 0 NA intron (ENSMUSG00000105092.1, intron 2 of 2) lincRNA-intron (ENSMUSG00000105092.1, intron 2 of 2) 6525 ENSMUSG00000105092.1 ENSMUSG00000105092 ENSMUST00000200360 Gm42468 lincRNA Interval_1671 chr1 30921890 30922658 + 0 NA Intergenic Intergenic 27035 ENSMUSG00000026064.16 ENSMUSG00000026064 ENSMUST00000130934 Ptp4a1 protein_coding Interval_129 GL456370.1 26309 26567 + 0 NA NA NA NA NA Interval_12311 chr1 191608731 191609473 + 0 NA TTS (ENSMUSG00000037461.10) protein_coding-TTS (ENSMUSG00000037461.10) 11455 ENSMUSG00000102970.1 ENSMUSG00000102970 ENSMUST00000194205 Gm37349 TEC Interval_104121 chr3 58783885 58786590 + 0 NA intron (ENSMUSG00000097725.4, intron 8 of 8) lincRNA-intron (ENSMUSG00000097725.4, intron 3 of 5) 26706 ENSMUSG00000101860.4 ENSMUSG00000101860 ENSMUST00000191233 Mindy4b-ps protein_coding Interval_109597 chr3 144966094 144966638 + 0 NA exon (ENSMUSG00000068547.7, exon 6 of 14) protein_coding-exon (ENSMUSG00000068547.7, exon 6 of 14) -5758 ENSMUSG00000106361.1 ENSMUSG00000106361 ENSMUST00000198898 Gm35066 macro_lncRNA Interval_151042 chr7 118126608 118127227 + 0 NA intron (ENSMUSG00000030654.9, intron 1 of 4) protein_coding-intron (ENSMUSG00000030654.9, intron 2 of 5) 2655 ENSMUSG00000030654.9 ENSMUSG00000030654 ENSMUST00000206536 Arl6ip1 protein_coding Interval_85557 chr19 28538617 28539035 + 0 NA intron (ENSMUSG00000052942.13, intron 2 of 2) protein_coding-intron (ENSMUSG00000052942.13, intron 2 of 9) 44468 ENSMUSG00000089952.1 ENSMUSG00000089952 ENSMUST00000162380 4933413C19Rik sense_intronic Interval_4320 chr1 72714234 72714485 + 0 NA TTS (ENSMUSG00000046330.10) protein_coding-TTS (ENSMUSG00000046330.10) 3045 ENSMUSG00000046330.10 ENSMUSG00000046330 ENSMUST00000211963 Rpl37a protein_coding Interval_155206 chr8 27481202 27481411 + 0 NA intron (ENSMUSG00000110333.1, intron 12 of 65) protein_coding-intron (ENSMUSG00000063932.5, intron 12 of 13) 33636 ENSMUSG00000063932.5 ENSMUSG00000063932 ENSMUST00000081321 Poteg protein_coding Interval_135805 chr6 47473979 47474256 + 0 NA intron (ENSMUSG00000029686.15, intron 1 of 1) protein_coding-intron (ENSMUSG00000029686.15, intron 1 of 21) -19797 ENSMUSG00000052241.3 ENSMUSG00000052241 ENSMUST00000064013 A930035D04Rik pseudogene Interval_146947 chr7 56117123 56117356 + 0 NA intron (ENSMUSG00000030451.16, intron 19 of 90) protein_coding-intron (ENSMUSG00000030451.16, intron 20 of 92) 49255 ENSMUSG00000030451.16 ENSMUSG00000030451 ENSMUST00000205678 Herc2 protein_coding Interval_121848 chr5 8819790 8820952 + 0 NA intron (ENSMUSG00000028970.9, intron 7 of 21) protein_coding-intron (ENSMUSG00000028970.9, intron 8 of 27) -10776 ENSMUSG00000105870.1 ENSMUSG00000105870 ENSMUST00000197499 7330423F06Rik TEC Interval_97810 chr2 144214332 144215384 + 0 NA Intergenic Intergenic -23807 ENSMUSG00000074758.10 ENSMUSG00000074758 ENSMUST00000209482 Gm5535 lincRNA Interval_95112 chr2 103986510 103986903 + 0 NA intron (ENSMUSG00000046085.7, intron 2 of 3) protein_coding-intron (ENSMUSG00000046085.7, intron 2 of 3) 28711 ENSMUSG00000032698.15 ENSMUSG00000032698 ENSMUST00000133210 Lmo2 protein_coding Interval_98606 chr2 153548543 153549898 + 0 NA Intergenic Intergenic 56430 ENSMUSG00000079001.1 ENSMUSG00000079001 ENSMUST00000109783 4930404H24Rik protein_coding Interval_158472 chr8 83921246 83922029 + 0 NA intron (ENSMUSG00000013033.16, intron 3 of 22) protein_coding-intron (ENSMUSG00000013033.16, intron 3 of 23) 7919 ENSMUSG00000105569.1 ENSMUSG00000105569 ENSMUST00000199528 Gm44450 miRNA Interval_23463 chr11 22766538 22766769 + 0 NA intron (ENSMUSG00000051650.11, intron 5 of 5) protein_coding-intron (ENSMUSG00000051650.11, intron 5 of 5) -6628 ENSMUSG00000084081.3 ENSMUSG00000084081 ENSMUST00000117244 Gm12057 processed_pseudogene Interval_84922 chr19 18798965 18800097 + 0 NA intron (ENSMUSG00000024727.9, intron 11 of 18) protein_coding-intron (ENSMUSG00000024727.9, intron 11 of 38) -22570 ENSMUSG00000088601.1 ENSMUSG00000088601 ENSMUST00000157976 Gm24190 misc_RNA Interval_43240 chr13 26541551 26541904 + 0 NA Intergenic Intergenic 49173 ENSMUSG00000060198.7 ENSMUSG00000060198 ENSMUST00000180940 Gm11353 processed_pseudogene Interval_104484 chr3 66558293 66559318 + 0 NA Intergenic Intergenic 4746 ENSMUSG00000103600.1 ENSMUSG00000103600 ENSMUST00000193914 Gm17952 processed_pseudogene Interval_62379 chr15 91338978 91339425 + 0 NA intron (ENSMUSG00000036298.10, intron 6 of 9) protein_coding-intron (ENSMUSG00000036298.10, intron 6 of 9) 73016 ENSMUSG00000036298.10 ENSMUSG00000036298 ENSMUST00000109282 Slc2a13 protein_coding Interval_118626 chr4 132850082 132850791 + 0 NA Intergenic Intergenic -11889 ENSMUSG00000088990.1 ENSMUSG00000088990 ENSMUST00000158365 Gm22767 scaRNA Interval_92200 chr2 56044833 56045079 + 0 NA Intergenic Intergenic 5103 ENSMUSG00000082142.1 ENSMUSG00000082142 ENSMUST00000120018 Gm13518 processed_pseudogene Interval_148863 chr7 89433598 89434405 + 0 NA intron (ENSMUSG00000109311.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000109311.1, intron 1 of 1) 7695 ENSMUSG00000109311.1 ENSMUSG00000109311 ENSMUST00000207391 AI314278 lincRNA Interval_148683 chr7 84119657 84120763 + 0 NA intron (ENSMUSG00000038459.10, intron 1 of 2) protein_coding-intron (ENSMUSG00000038459.10, intron 1 of 2) 31460 ENSMUSG00000038459.10 ENSMUSG00000038459 ENSMUST00000208271 Abhd17c protein_coding Interval_131570 chr5 138186676 138188321 + 0 NA promoter-TSS (ENSMUSG00000036980.13) protein_coding-promoter-TSS (ENSMUSG00000036980.13) -282 ENSMUSG00000036980.13 ENSMUSG00000036980 ENSMUST00000200483 Taf6 protein_coding Interval_114265 chr4 70318223 70318414 + 0 NA intron (ENSMUSG00000039298.16, intron 9 of 33) protein_coding-intron (ENSMUSG00000039298.16, intron 9 of 33) -68945 ENSMUSG00000080902.1 ENSMUSG00000080902 ENSMUST00000120944 Ywhaq-ps3 transcribed_processed_pseudogene Interval_38021 chr12 74013669 74014770 + 0 NA intron (ENSMUSG00000044912.11, intron 1 of 3) protein_coding-intron (ENSMUSG00000044912.11, intron 1 of 7) 49738 ENSMUSG00000021113.5 ENSMUSG00000021113 ENSMUST00000220909 Snapc1 protein_coding Interval_49737 chr13 114344315 114344742 + 0 NA intron (ENSMUSG00000021764.8, intron 1 of 3) protein_coding-intron (ENSMUSG00000021764.8, intron 2 of 4) 43522 ENSMUSG00000021764.8 ENSMUSG00000021764 ENSMUST00000225978 Ndufs4 protein_coding Interval_3231 chr1 55026889 55027868 + 0 NA promoter-TSS (ENSMUSG00000025982.13) protein_coding-promoter-TSS (ENSMUSG00000025982.13) 16 ENSMUSG00000025982.13 ENSMUSG00000025982 ENSMUST00000188419 Sf3b1 protein_coding Interval_135756 chr6 46989264 46989477 + 0 NA intron (ENSMUSG00000039419.17, intron 16 of 23) protein_coding-intron (ENSMUSG00000039419.17, intron 16 of 23) -55786 ENSMUSG00000107952.1 ENSMUSG00000107952 ENSMUST00000203583 Gm6352 processed_pseudogene Interval_102099 chr3 17319141 17319622 + 0 NA Intergenic Intergenic 15044 ENSMUSG00000104411.1 ENSMUSG00000104411 ENSMUST00000191898 Gm30340 lincRNA Interval_106213 chr3 94648281 94649291 + 0 NA intron (ENSMUSG00000005968.14, intron 1 of 3) protein_coding-intron (ENSMUSG00000005968.14, intron 1 of 12) 5688 ENSMUSG00000118474.1 ENSMUSG00000118474 ENSMUST00000238219 Gm10972 processed_pseudogene Interval_64176 chr16 8860223 8861668 + 0 NA Intergenic Intergenic 12226 ENSMUSG00000087982.1 ENSMUSG00000087982 ENSMUST00000157357 Gm22224 rRNA Interval_69770 chr16 96151419 96152017 + 0 NA promoter-TSS (ENSMUSG00000023147.17) protein_coding-promoter-TSS (ENSMUSG00000023147.17) -4134 ENSMUSG00000117129.1 ENSMUSG00000117129 ENSMUST00000233788 Gm49928 antisense Interval_48417 chr13 98902356 98902641 + 0 NA intron (ENSMUSG00000009470.17, intron 1 of 6) protein_coding-intron (ENSMUSG00000009470.17, intron 1 of 23) -1726 ENSMUSG00000062461.7 ENSMUSG00000062461 ENSMUST00000080866 Rpl27a-ps4 processed_pseudogene Interval_113355 chr4 53770867 53772733 + 0 NA intron (ENSMUSG00000028414.17, intron 11 of 11) protein_coding-intron (ENSMUSG00000028414.17, intron 11 of 11) -7905 ENSMUSG00000028417.3 ENSMUSG00000028417 ENSMUST00000030124 Tal2 protein_coding Interval_56803 chr14 122191009 122191373 + 0 NA intron (ENSMUSG00000025545.10, intron 1 of 7) protein_coding-intron (ENSMUSG00000025545.10, intron 1 of 7) 42463 ENSMUSG00000100585.1 ENSMUSG00000100585 ENSMUST00000187423 1700108J01Rik antisense Interval_174242 chrX 140541993 140543512 + 0 NA promoter-TSS (ENSMUSG00000031431.13) protein_coding-promoter-TSS (ENSMUSG00000031431.13) 5777 ENSMUSG00000031431.13 ENSMUSG00000031431 ENSMUST00000152048 Tsc22d3 protein_coding Interval_20290 chr10 116688908 116689213 + 0 NA Intergenic Intergenic 14469 ENSMUSG00000097104.1 ENSMUSG00000097104 ENSMUST00000181656 Gm26579 lincRNA Interval_12323 chr1 191737108 191739824 + 0 NA intron (ENSMUSG00000026623.16, intron 2 of 4) protein_coding-intron (ENSMUSG00000026623.16, intron 2 of 7) 20439 ENSMUSG00000026623.16 ENSMUSG00000026623 ENSMUST00000130876 Lpgat1 protein_coding Interval_46518 chr13 66777614 66779213 + 0 NA intron (ENSMUSG00000114226.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000114226.1, intron 1 of 1) 972 ENSMUSG00000114226.1 ENSMUSG00000114226 ENSMUST00000223696 Gm48412 lincRNA Interval_61639 chr15 83090744 83091490 + 0 NA intron (ENSMUSG00000058586.12, intron 1 of 6) protein_coding-intron (ENSMUSG00000058586.12, intron 1 of 2) -9146 ENSMUSG00000058586.12 ENSMUSG00000058586 ENSMUST00000169461 Serhl protein_coding Interval_156433 chr8 48133458 48134033 + 0 NA intron (ENSMUSG00000031562.15, intron 3 of 3) protein_coding-intron (ENSMUSG00000031562.15, intron 3 of 5) 23583 ENSMUSG00000031562.15 ENSMUSG00000031562 ENSMUST00000174379 Dctd protein_coding Interval_19399 chr10 98951281 98951652 + 0 NA intron (ENSMUSG00000019943.10, intron 1 of 8) protein_coding-intron (ENSMUSG00000019943.10, intron 1 of 20) -39414 ENSMUSG00000019943.10 ENSMUSG00000019943 ENSMUST00000218419 Atp2b1 protein_coding Interval_157077 chr8 65007530 65008253 + 0 NA intron (ENSMUSG00000053490.8, intron 1 of 1) protein_coding-intron (ENSMUSG00000053490.8, intron 1 of 1) 6619 ENSMUSG00000109718.1 ENSMUSG00000109718 ENSMUST00000078409 Trim61 protein_coding Interval_113191 chr4 49392738 49393010 + 0 NA intron (ENSMUSG00000060317.9, intron 2 of 4) protein_coding-intron (ENSMUSG00000060317.9, intron 2 of 4) -3238 ENSMUSG00000082725.1 ENSMUSG00000082725 ENSMUST00000121636 Gm12451 unprocessed_pseudogene Interval_73257 chr17 35821156 35823945 + 0 NA promoter-TSS (ENSMUSG00000059714.13) protein_coding-promoter-TSS (ENSMUSG00000059714.13) 866 ENSMUSG00000003541.6 ENSMUSG00000003541 ENSMUST00000003635 Ier3 protein_coding Interval_121786 chr5 8221876 8222289 + 0 NA intron (ENSMUSG00000040537.17, intron 4 of 29) protein_coding-intron (ENSMUSG00000040537.17, intron 4 of 28) -18107 ENSMUSG00000095290.1 ENSMUSG00000095290 ENSMUST00000179161 Gm24196 miRNA Interval_128333 chr5 112591602 112592301 + 0 NA Intergenic Intergenic -1955 ENSMUSG00000097962.7 ENSMUSG00000097962 ENSMUST00000182949 1700034G24Rik lincRNA Interval_22277 chr11 8488175 8488754 + 0 NA intron (ENSMUSG00000020422.14, intron 17 of 30) protein_coding-intron (ENSMUSG00000020422.14, intron 17 of 30) -104611 ENSMUSG00000083553.1 ENSMUSG00000083553 ENSMUST00000117240 Gm11989 processed_pseudogene Interval_61780 chr15 84086339 84087544 + 0 NA intron (ENSMUSG00000018865.9, intron 4 of 7) protein_coding-intron (ENSMUSG00000018865.9, intron 4 of 6) 18668 ENSMUSG00000018865.9 ENSMUSG00000018865 ENSMUST00000229826 Sult4a1 protein_coding Interval_47602 chr13 89806668 89807526 + 0 NA exon (ENSMUSG00000089940.1, exon 2 of 2) antisense-exon (ENSMUSG00000089940.1, exon 2 of 2) -66700 ENSMUSG00000021614.16 ENSMUSG00000021614 ENSMUST00000162715 Vcan protein_coding Interval_7223 chr1 127989864 127991053 + 0 NA intron (ENSMUSG00000036086.16, intron 11 of 20) protein_coding-intron (ENSMUSG00000036086.16, intron 11 of 20) -5771 ENSMUSG00000104164.1 ENSMUSG00000104164 ENSMUST00000193744 Gm38248 TEC Interval_68671 chr16 84462008 84463179 + 0 NA Intergenic Intergenic 51595 ENSMUSG00000116991.1 ENSMUSG00000116991 ENSMUST00000231489 Gm6032 processed_pseudogene Interval_131454 chr5 137337108 137340037 + 0 NA TTS (ENSMUSG00000105802.1) TEC-TTS (ENSMUSG00000105802.1) 1163 ENSMUSG00000105802.1 ENSMUSG00000105802 ENSMUST00000198569 Gm43012 TEC Interval_99910 chr2 165756501 165756723 + 0 NA intron (ENSMUSG00000017897.18, intron 10 of 15) protein_coding-intron (ENSMUSG00000017897.18, intron 10 of 15) -89755 ENSMUSG00000081758.1 ENSMUSG00000081758 ENSMUST00000118200 Gm11460 processed_pseudogene Interval_32280 chr11 106669261 106670623 + 0 NA intron (ENSMUSG00000020717.19, intron 13 of 14) protein_coding-intron (ENSMUSG00000020717.19, intron 15 of 15) -6616 ENSMUSG00000020717.19 ENSMUSG00000020717 ENSMUST00000124958 Pecam1 protein_coding Interval_73079 chr17 34653823 34654293 + 0 NA intron (ENSMUSG00000015461.15, intron 17 of 17) protein_coding-intron (ENSMUSG00000015461.15, intron 17 of 17) -6399 ENSMUSG00000033327.18 ENSMUSG00000033327 ENSMUST00000087399 Tnxb protein_coding Interval_34518 chr12 4857721 4859379 + 0 NA exon (ENSMUSG00000051721.6, exon 4 of 4) protein_coding-exon (ENSMUSG00000051721.6, exon 4 of 4) 10711 ENSMUSG00000037336.14 ENSMUSG00000037336 ENSMUST00000147241 Mfsd2b protein_coding Interval_32812 chr11 111006968 111007186 + 0 NA intron (ENSMUSG00000051497.15, intron 1 of 1) protein_coding-intron (ENSMUSG00000051497.15, intron 1 of 1) 39044 ENSMUSG00000051497.15 ENSMUSG00000051497 ENSMUST00000178798 Kcnj16 protein_coding Interval_27263 chr11 65097718 65097961 + 0 NA intron (ENSMUSG00000033389.16, intron 1 of 20) protein_coding-intron (ENSMUSG00000033389.16, intron 1 of 20) -30032 ENSMUSG00000076394.1 ENSMUSG00000076394 ENSMUST00000102439 Gm25991 miRNA Interval_59925 chr15 62004086 62004389 + 0 NA Intergenic Intergenic 18315 ENSMUSG00000022346.16 ENSMUSG00000022346 ENSMUST00000160009 Myc protein_coding Interval_21914 chr11 5160624 5161509 + 0 NA Intergenic Intergenic -8826 ENSMUSG00000034164.17 ENSMUSG00000034164 ENSMUST00000138551 Emid1 protein_coding Interval_94276 chr2 87387802 87388568 + 0 NA exon (ENSMUSG00000047594.4, exon 1 of 1) protein_coding-exon (ENSMUSG00000047594.4, exon 1 of 1) 2336 ENSMUSG00000047594.4 ENSMUSG00000047594 ENSMUST00000056435 Olfr1122 protein_coding Interval_100740 chr2 172267829 172268243 + 0 NA Intergenic Intergenic 19544 ENSMUSG00000038537.1 ENSMUSG00000038537 ENSMUST00000038532 Mc3r protein_coding Interval_96445 chr2 122936152 122936864 + 0 NA Intergenic Intergenic 164790 ENSMUSG00000005803.14 ENSMUSG00000005803 ENSMUST00000176343 Sqor protein_coding Interval_168668 chr9 85693683 85694215 + 0 NA intron (ENSMUSG00000035941.15, intron 25 of 27) protein_coding-intron (ENSMUSG00000035941.15, intron 26 of 28) 24589 ENSMUSG00000035941.15 ENSMUSG00000035941 ENSMUST00000186447 Ibtk protein_coding Interval_9469 chr1 157447101 157447415 + 0 NA Intergenic Intergenic -14694 ENSMUSG00000033488.11 ENSMUSG00000033488 ENSMUST00000194220 Cryzl2 protein_coding Interval_64125 chr16 8568334 8569155 + 0 NA intron (ENSMUSG00000057880.12, intron 1 of 2) protein_coding-intron (ENSMUSG00000057880.12, intron 1 of 15) -14883 ENSMUSG00000057880.12 ENSMUSG00000057880 ENSMUST00000128459 Abat protein_coding Interval_85326 chr19 24717578 24717919 + 0 NA intron (ENSMUSG00000041731.13, intron 4 of 5) protein_coding-intron (ENSMUSG00000041731.13, intron 9 of 10) -24378 ENSMUSG00000097950.1 ENSMUSG00000097950 ENSMUST00000182466 Gm17800 processed_pseudogene Interval_78552 chr18 14658565 14658792 + 0 NA intron (ENSMUSG00000037013.17, intron 2 of 9) protein_coding-intron (ENSMUSG00000037013.17, intron 3 of 10) -10748 ENSMUSG00000094306.1 ENSMUSG00000094306 ENSMUST00000084007 Gm24924 snRNA Interval_157539 chr8 71287859 71288646 + 0 NA intron (ENSMUSG00000004677.17, intron 1 of 39) protein_coding-intron (ENSMUSG00000004677.17, intron 1 of 39) 15538 ENSMUSG00000004677.17 ENSMUSG00000004677 ENSMUST00000212412 Myo9b protein_coding Interval_108144 chr3 121867328 121868010 + 0 NA Intergenic Intergenic 4827 ENSMUSG00000104595.1 ENSMUSG00000104595 ENSMUST00000198469 Gm42593 processed_pseudogene Interval_61688 chr15 83412478 83412700 + 0 NA intron (ENSMUSG00000016664.16, intron 1 of 11) protein_coding-intron (ENSMUSG00000016664.16, intron 1 of 11) -6526 ENSMUSG00000049414.7 ENSMUSG00000049414 ENSMUST00000079706 Gm5417 processed_pseudogene Interval_106042 chr3 91316775 91317277 + 0 NA Intergenic Intergenic -226223 ENSMUSG00000091175.2 ENSMUSG00000091175 ENSMUST00000166173 S100a7l2 protein_coding Interval_167894 chr9 73662908 73663121 + 0 NA intron (ENSMUSG00000062151.13, intron 17 of 32) protein_coding-intron (ENSMUSG00000062151.13, intron 16 of 31) 13678 ENSMUSG00000099064.1 ENSMUSG00000099064 ENSMUST00000185086 Gm27148 processed_pseudogene Interval_163593 chr9 22388391 22389622 + 0 NA exon (ENSMUSG00000036777.8, exon 1 of 24) protein_coding-exon (ENSMUSG00000036777.8, exon 1 of 24) -12580 ENSMUSG00000110873.1 ENSMUSG00000110873 ENSMUST00000213730 Gm48652 processed_pseudogene Interval_159288 chr8 92812604 92812801 + 0 NA Intergenic Intergenic -27482 ENSMUSG00000031740.8 ENSMUSG00000031740 ENSMUST00000211567 Mmp2 protein_coding Interval_69740 chr16 95958237 95958589 + 0 NA Intergenic Intergenic 32477 ENSMUSG00000022913.16 ENSMUSG00000022913 ENSMUST00000233134 Psmg1 protein_coding Interval_162079 chr8 124930412 124930910 + 0 NA intron (ENSMUSG00000031987.6, intron 1 of 4) protein_coding-intron (ENSMUSG00000031987.6, intron 1 of 4) 18663 ENSMUSG00000031987.6 ENSMUSG00000031987 ENSMUST00000034469 Egln1 protein_coding Interval_152297 chr7 131553625 131555688 + 0 NA intron (ENSMUSG00000050100.14, intron 2 of 2) protein_coding-intron (ENSMUSG00000050100.14, intron 1 of 1) -5751 ENSMUSG00000066979.6 ENSMUSG00000066979 ENSMUST00000207442 Bub3 protein_coding Interval_132580 chr5 146437454 146437886 + 0 NA intron (ENSMUSG00000029636.11, intron 3 of 9) protein_coding-intron (ENSMUSG00000029636.11, intron 3 of 9) -17939 ENSMUSG00000029636.11 ENSMUSG00000029636 ENSMUST00000238592 Wasf3 protein_coding Interval_92940 chr2 68860724 68862493 + 0 NA promoter-TSS (ENSMUSG00000027035.10) protein_coding-promoter-TSS (ENSMUSG00000027035.10) 166 ENSMUSG00000027035.10 ENSMUSG00000027035 ENSMUST00000141498 Cers6 protein_coding Interval_105618 chr3 88154365 88154572 + 0 NA intron (ENSMUSG00000001419.17, intron 1 of 1) protein_coding-intron (ENSMUSG00000001419.17, intron 1 of 10) -13784 ENSMUSG00000001419.17 ENSMUSG00000001419 ENSMUST00000152861 Mef2d protein_coding Interval_78048 chr18 7501594 7502618 + 0 NA intron (ENSMUSG00000057440.8, intron 3 of 12) protein_coding-intron (ENSMUSG00000057440.8, intron 3 of 16) -46881 ENSMUSG00000117556.1 ENSMUSG00000117556 ENSMUST00000234527 Gm18948 processed_pseudogene Interval_61973 chr15 85590414 85591490 + 0 NA intron (ENSMUSG00000097209.2, intron 3 of 4) antisense-intron (ENSMUSG00000097209.2, intron 3 of 4) 10700 ENSMUSG00000097209.2 ENSMUSG00000097209 ENSMUST00000180441 AU022754 antisense Interval_25308 chr11 46229458 46230464 + 0 NA intron (ENSMUSG00000020340.16, intron 23 of 30) protein_coding-intron (ENSMUSG00000020340.16, intron 23 of 30) -5570 ENSMUSG00000048721.2 ENSMUSG00000048721 ENSMUST00000060185 Fndc9 protein_coding Interval_26794 chr11 60524153 60524501 + 0 NA intron (ENSMUSG00000042678.17, intron 62 of 64) protein_coding-intron (ENSMUSG00000042678.17, intron 63 of 65) -12054 ENSMUSG00000042650.3 ENSMUSG00000042650 ENSMUST00000044250 Alkbh5 protein_coding Interval_84216 chr19 8836512 8838182 + 0 NA promoter-TSS (ENSMUSG00000071657.12) protein_coding-promoter-TSS (ENSMUSG00000071657.12) -120 ENSMUSG00000071657.12 ENSMUSG00000071657 ENSMUST00000159653 Bscl2 protein_coding Interval_41752 chr12 118677713 118678593 + 0 NA Intergenic Intergenic 54902 ENSMUSG00000113546.1 ENSMUSG00000113546 ENSMUST00000223539 Gm18441 processed_pseudogene Interval_166995 chr9 64377045 64377637 + 0 NA Intergenic Intergenic -8285 ENSMUSG00000036466.17 ENSMUSG00000036466 ENSMUST00000153934 Megf11 protein_coding Interval_135391 chr6 38910889 38911560 + 0 NA intron (ENSMUSG00000029925.13, intron 1 of 5) protein_coding-intron (ENSMUSG00000029925.13, intron 1 of 5) -35301 ENSMUSG00000061436.15 ENSMUSG00000061436 ENSMUST00000114855 Hipk2 protein_coding Interval_89605 chr2 23191718 23192060 + 0 NA intron (ENSMUSG00000026775.9, intron 13 of 18) protein_coding-intron (ENSMUSG00000026775.9, intron 13 of 18) -10144 ENSMUSG00000081648.1 ENSMUSG00000081648 ENSMUST00000117205 Gm13423 processed_pseudogene Interval_140898 chr6 122653139 122653871 + 0 NA Intergenic Intergenic 26752 ENSMUSG00000046323.8 ENSMUSG00000046323 ENSMUST00000123429 Dppa3 protein_coding Interval_116746 chr4 117056272 117057331 + 0 NA intron (ENSMUSG00000028683.14, intron 2 of 3) protein_coding-intron (ENSMUSG00000028683.14, intron 4 of 9) -10662 ENSMUSG00000028683.14 ENSMUSG00000028683 ENSMUST00000129587 Eif2b3 protein_coding Interval_23653 chr11 24105979 24106677 + 0 NA intron (ENSMUSG00000086612.1, intron 3 of 3) protein_coding-intron (ENSMUSG00000000861.15, intron 2 of 4) 9077 ENSMUSG00000086612.1 ENSMUSG00000086612 ENSMUST00000133819 Gm12064 antisense Interval_171257 chr9 115705687 115706254 + 0 NA Intergenic Intergenic 25227 ENSMUSG00000110905.1 ENSMUSG00000110905 ENSMUST00000215982 Gm48007 lincRNA Interval_25800 chr11 51805058 51806093 + 0 NA Intergenic Intergenic 41881 ENSMUSG00000020386.5 ENSMUSG00000020386 ENSMUST00000136363 Sar1b protein_coding Interval_137648 chr6 77599417 77599703 + 0 NA exon (ENSMUSG00000063063.12, exon 8 of 8) protein_coding-exon (ENSMUSG00000063063.12, exon 8 of 8) -11079 ENSMUSG00000107707.1 ENSMUSG00000107707 ENSMUST00000204098 Gm44286 TEC Interval_139731 chr6 108212413 108213598 + 0 NA promoter-TSS (ENSMUSG00000030102.11) protein_coding-promoter-TSS (ENSMUSG00000030102.11) -27449 ENSMUSG00000030101.15 ENSMUSG00000030101 ENSMUST00000171697 Sumf1 protein_coding Interval_78481 chr18 13560505 13560752 + 0 NA intron (ENSMUSG00000117608.1, intron 2 of 5) lincRNA-intron (ENSMUSG00000117608.1, intron 2 of 5) 40772 ENSMUSG00000117608.1 ENSMUSG00000117608 ENSMUST00000234112 AC103362.1 lincRNA Interval_41683 chr12 117724363 117724976 + 0 NA TTS (ENSMUSG00000113840.1) processed_pseudogene-TTS (ENSMUSG00000113840.1) 697 ENSMUSG00000113840.1 ENSMUSG00000113840 ENSMUST00000223173 Gm18955 processed_pseudogene Interval_15762 chr10 56238744 56239595 + 0 NA Intergenic Intergenic -10480 ENSMUSG00000038122.9 ENSMUSG00000038122 ENSMUST00000217792 Tbc1d32 protein_coding Interval_136026 chr6 49936579 49936912 + 0 NA Intergenic Intergenic -77899 ENSMUSG00000107664.1 ENSMUSG00000107664 ENSMUST00000205019 Gm18007 processed_pseudogene Interval_143204 chr7 4469897 4472101 + 0 NA TTS (ENSMUSG00000006154.13) protein_coding-TTS (ENSMUSG00000006154.13) 286 ENSMUSG00000091177.2 ENSMUSG00000091177 ENSMUST00000171665 Gm15494 antisense Interval_18999 chr10 93665563 93666783 + 0 NA promoter-TSS (ENSMUSG00000090159.1) processed_pseudogene-promoter-TSS (ENSMUSG00000090159.1) -327 ENSMUSG00000090159.1 ENSMUSG00000090159 ENSMUST00000160295 Gm8580 processed_pseudogene Interval_52506 chr14 47178199 47178425 + 0 NA exon (ENSMUSG00000115764.1, exon 1 of 1) processed_pseudogene-exon (ENSMUSG00000115764.1, exon 1 of 1) 234 ENSMUSG00000115764.1 ENSMUSG00000115764 ENSMUST00000226918 Gm18811 processed_pseudogene Interval_107491 chr3 108075462 108076056 + 0 NA promoter-TSS (ENSMUSG00000027889.17) protein_coding-promoter-TSS (ENSMUSG00000027889.17) 9636 ENSMUSG00000027889.17 ENSMUSG00000027889 ENSMUST00000153626 Ampd2 protein_coding Interval_132901 chr5 148640341 148642268 + 0 NA Intergenic Intergenic -27660 ENSMUSG00000107098.1 ENSMUSG00000107098 ENSMUST00000202418 Gm29815 processed_pseudogene Interval_118235 chr4 129696114 129697129 + 0 NA promoter-TSS (ENSMUSG00000053730.15) protein_coding-promoter-TSS (ENSMUSG00000053730.15) -12050 ENSMUSG00000098422.1 ENSMUSG00000098422 ENSMUST00000184308 Mir7016 miRNA Interval_119157 chr4 135893136 135893454 + 0 NA Intergenic Intergenic -1818 ENSMUSG00000083430.1 ENSMUSG00000083430 ENSMUST00000118683 Gm13006 processed_pseudogene Interval_78883 chr18 21121575 21122442 + 0 NA Intergenic Intergenic -44899 ENSMUSG00000062962.5 ENSMUSG00000062962 ENSMUST00000084199 Gm6378 processed_pseudogene Interval_124527 chr5 50042019 50042229 + 0 NA intron (ENSMUSG00000029090.12, intron 1 of 18) protein_coding-intron (ENSMUSG00000029090.12, intron 1 of 18) 16521 ENSMUSG00000029090.12 ENSMUSG00000029090 ENSMUST00000199132 Adgra3 protein_coding Interval_36031 chr12 33440990 33441343 + 0 NA exon (ENSMUSG00000020561.8, exon 4 of 4) protein_coding-exon (ENSMUSG00000020561.8, exon 4 of 4) 11531 ENSMUSG00000020561.8 ENSMUSG00000020561 ENSMUST00000219758 Twistnb protein_coding Interval_43873 chr13 37773048 37774041 + 0 NA Intergenic Intergenic 11796 ENSMUSG00000114800.1 ENSMUSG00000114800 ENSMUST00000224394 Gm31600 lincRNA Interval_58192 chr15 30579163 30579610 + 0 NA intron (ENSMUSG00000022240.10, intron 3 of 5) protein_coding-intron (ENSMUSG00000022240.10, intron 3 of 22) -10901 ENSMUSG00000087836.1 ENSMUSG00000087836 ENSMUST00000157211 Gm23956 rRNA Interval_144461 chr7 25292675 25293446 + 0 NA promoter-TSS (ENSMUSG00000005442.13) protein_coding-promoter-TSS (ENSMUSG00000005442.13) 1852 ENSMUSG00000005442.13 ENSMUSG00000005442 ENSMUST00000163901 Cic protein_coding Interval_149834 chr7 101905440 101906587 + 0 NA promoter-TSS (ENSMUSG00000030842.12) protein_coding-promoter-TSS (ENSMUSG00000030842.12) 346 ENSMUSG00000078630.8 ENSMUSG00000078630 ENSMUST00000106970 Tomt protein_coding Interval_102713 chr3 30535985 30536328 + 0 NA intron (ENSMUSG00000027684.16, intron 2 of 8) protein_coding-intron (ENSMUSG00000027684.16, intron 2 of 8) 25973 ENSMUSG00000104243.1 ENSMUSG00000104243 ENSMUST00000195484 Gm38153 processed_pseudogene Interval_43905 chr13 37975301 37975559 + 0 NA exon (ENSMUSG00000021427.10, exon 8 of 8) protein_coding-exon (ENSMUSG00000021427.10, exon 8 of 8) 18653 ENSMUSG00000021427.10 ENSMUSG00000021427 ENSMUST00000224399 Ssr1 protein_coding Interval_61825 chr15 84440586 84441127 + 0 NA intron (ENSMUSG00000062760.11, intron 1 of 5) protein_coding-intron (ENSMUSG00000062760.11, intron 1 of 4) 6241 ENSMUSG00000062760.11 ENSMUSG00000062760 ENSMUST00000186527 Shisal1 protein_coding Interval_83165 chr18 82477089 82477728 + 0 NA intron (ENSMUSG00000041607.17, intron 1 of 5) protein_coding-intron (ENSMUSG00000041607.17, intron 1 of 6) 46613 ENSMUSG00000061684.6 ENSMUSG00000061684 ENSMUST00000130005 Rpl21-ps8 processed_pseudogene Interval_151819 chr7 126856285 126857646 + 0 NA TTS (ENSMUSG00000030689.15) protein_coding-TTS (ENSMUSG00000030689.15) 5396 ENSMUSG00000030689.15 ENSMUSG00000030689 ENSMUST00000144056 Ino80e protein_coding Interval_149624 chr7 100123626 100124446 + 0 NA Intergenic Intergenic -22576 ENSMUSG00000030726.16 ENSMUSG00000030726 ENSMUST00000156202 Pold3 protein_coding Interval_88356 chr2 4389380 4389812 + 0 NA promoter-TSS (ENSMUSG00000026657.17) protein_coding-promoter-TSS (ENSMUSG00000026657.17) -8529 ENSMUSG00000075826.1 ENSMUSG00000075826 ENSMUST00000101878 Gm23691 snRNA Interval_79614 chr18 34022867 34023429 + 0 NA Intergenic Intergenic 1132 ENSMUSG00000088501.1 ENSMUSG00000088501 ENSMUST00000157876 Gm22788 snRNA Interval_64178 chr16 8869711 8870295 + 0 NA Intergenic Intergenic 3168 ENSMUSG00000087982.1 ENSMUSG00000087982 ENSMUST00000157357 Gm22224 rRNA Interval_35150 chr12 17583961 17584266 + 0 NA Intergenic Intergenic -15264 ENSMUSG00000113131.1 ENSMUSG00000113131 ENSMUST00000222500 Gm48290 processed_pseudogene Interval_116049 chr4 107241102 107241678 + 0 NA intron (ENSMUSG00000028617.10, intron 1 of 5) protein_coding-intron (ENSMUSG00000028617.10, intron 3 of 7) 11770 ENSMUSG00000028617.10 ENSMUSG00000028617 ENSMUST00000156771 Lrrc42 protein_coding Interval_147589 chr7 68682413 68682667 + 0 NA Intergenic Intergenic 43927 ENSMUSG00000108876.1 ENSMUSG00000108876 ENSMUST00000207441 Gm44692 lincRNA Interval_30406 chr11 94171982 94172404 + 0 NA Intergenic Intergenic 38691 ENSMUSG00000086003.7 ENSMUSG00000086003 ENSMUST00000125406 B230206L02Rik processed_transcript Interval_168180 chr9 77787815 77788733 + 0 NA exon (ENSMUSG00000032350.9, exon 12 of 16) protein_coding-exon (ENSMUSG00000032350.9, exon 12 of 16) 21519 ENSMUSG00000111253.1 ENSMUSG00000111253 ENSMUST00000217012 Gm34654 lincRNA Interval_74540 chr17 53168870 53169399 + 0 NA Intergenic Intergenic -27317 ENSMUSG00000117244.1 ENSMUSG00000117244 ENSMUST00000233156 Gm9210 processed_pseudogene Interval_136986 chr6 65569634 65570352 + 0 NA intron (ENSMUSG00000044162.12, intron 2 of 10) protein_coding-intron (ENSMUSG00000044162.12, intron 2 of 10) 44680 ENSMUSG00000044162.12 ENSMUSG00000044162 ENSMUST00000204241 Tnip3 protein_coding Interval_15146 chr10 42887023 42887319 + 0 NA exon (ENSMUSG00000111333.1, exon 1 of 1) processed_pseudogene-exon (ENSMUSG00000111333.1, exon 1 of 1) 279 ENSMUSG00000111333.1 ENSMUSG00000111333 ENSMUST00000217454 Gm48670 processed_pseudogene Interval_140212 chr6 115579052 115579429 + 0 NA TTS (ENSMUSG00000042389.13) protein_coding-TTS (ENSMUSG00000042389.13) 4792 ENSMUSG00000042389.13 ENSMUSG00000042389 ENSMUST00000143520 Tsen2 protein_coding Interval_57859 chr15 23411955 23412200 + 0 NA intron (ENSMUSG00000040420.15, intron 7 of 8) protein_coding-intron (ENSMUSG00000040420.15, intron 8 of 9) 2380 ENSMUSG00000115560.1 ENSMUSG00000115560 ENSMUST00000226326 Gm49191 antisense Interval_133865 chr6 13699771 13700383 + 0 NA Intergenic Intergenic -22139 ENSMUSG00000042742.7 ENSMUSG00000042742 ENSMUST00000203078 Bmt2 protein_coding Interval_6716 chr1 118954648 118954860 + 0 NA TTS (ENSMUSG00000098273.1) miRNA-TTS (ENSMUSG00000098273.1) 534 ENSMUSG00000098273.1 ENSMUSG00000098273 ENSMUST00000183982 Mir6346 miRNA Interval_171036 chr9 113891042 113891451 + 0 NA intron (ENSMUSG00000033392.16, intron 24 of 34) protein_coding-intron (ENSMUSG00000033392.16, intron 22 of 32) -40383 ENSMUSG00000009741.15 ENSMUSG00000009741 ENSMUST00000216293 Ubp1 protein_coding Interval_146470 chr7 46181512 46182056 + 0 NA Intergenic Intergenic -1751 ENSMUSG00000040136.10 ENSMUSG00000040136 ENSMUST00000210511 Abcc8 protein_coding Interval_135166 chr6 37128818 37129053 + 0 NA intron (ENSMUSG00000038665.15, intron 3 of 32) protein_coding-intron (ENSMUSG00000038665.15, intron 3 of 32) 171249 ENSMUSG00000038665.15 ENSMUSG00000038665 ENSMUST00000136457 Dgki protein_coding Interval_47057 chr13 74912939 74914392 + 0 NA Intergenic Intergenic 49360 ENSMUSG00000086743.2 ENSMUSG00000086743 ENSMUST00000129154 Hnrnpa1l2-ps processed_pseudogene Interval_91383 chr2 38422141 38423084 + 0 NA Intergenic Intergenic -1390 ENSMUSG00000085950.1 ENSMUSG00000085950 ENSMUST00000146404 Gm13589 lincRNA Interval_146817 chr7 52169580 52170824 + 0 NA Intergenic Intergenic -49758 ENSMUSG00000109026.1 ENSMUSG00000109026 ENSMUST00000209088 Gm44683 processed_pseudogene Interval_57119 chr15 6668635 6669795 + 0 NA Intergenic Intergenic 15292 ENSMUSG00000067547.6 ENSMUSG00000067547 ENSMUST00000146631 Gm7666 transcribed_processed_pseudogene Interval_157913 chr8 75645196 75645833 + 0 NA intron (ENSMUSG00000031620.16, intron 7 of 13) protein_coding-intron (ENSMUSG00000031620.16, intron 6 of 12) -49329 ENSMUSG00000103054.1 ENSMUSG00000103054 ENSMUST00000192721 Gm38270 TEC Interval_34775 chr12 11031053 11032192 + 0 NA Intergenic Intergenic -16191 ENSMUSG00000113620.1 ENSMUSG00000113620 ENSMUST00000222157 7420701I03Rik lincRNA Interval_3262 chr1 55223813 55225204 + 0 NA exon (ENSMUSG00000025978.14, exon 2 of 2) protein_coding-exon (ENSMUSG00000025978.14, exon 2 of 2) -1790 ENSMUSG00000097649.2 ENSMUSG00000097649 ENSMUST00000209801 Gm10561 antisense Interval_69436 chr16 93449440 93449887 + 0 NA intron (ENSMUSG00000099968.7, intron 1 of 1) lincRNA-intron (ENSMUSG00000099968.7, intron 1 of 2) 9142 ENSMUSG00000099968.7 ENSMUSG00000099968 ENSMUST00000231859 1700029J03Rik lincRNA Interval_30523 chr11 94929937 94930866 + 0 NA Intergenic Intergenic -8611 ENSMUSG00000001506.10 ENSMUSG00000001506 ENSMUST00000148046 Col1a1 protein_coding Interval_158680 chr8 85112584 85112852 + 0 NA promoter-TSS (ENSMUSG00000089213.1) miRNA-promoter-TSS (ENSMUSG00000089213.1) -650 ENSMUSG00000089213.1 ENSMUSG00000089213 ENSMUST00000158588 Gm23388 miRNA Interval_120471 chr4 148835932 148837120 + 0 NA intron (ENSMUSG00000028977.17, intron 1 of 1) protein_coding-intron (ENSMUSG00000028977.17, intron 1 of 15) 77798 ENSMUSG00000086766.1 ENSMUSG00000086766 ENSMUST00000151967 Gm15969 antisense Interval_160145 chr8 106699405 106699872 + 0 NA intron (ENSMUSG00000041949.6, intron 6 of 13) protein_coding-intron (ENSMUSG00000041949.6, intron 6 of 17) 16523 ENSMUSG00000041949.6 ENSMUSG00000041949 ENSMUST00000211979 Tango6 protein_coding Interval_9561 chr1 159413424 159413695 + 0 NA Intergenic Intergenic -15401 ENSMUSG00000103389.1 ENSMUSG00000103389 ENSMUST00000193072 Gm37757 processed_pseudogene Interval_983 chr1 13634700 13635051 + 0 NA intron (ENSMUSG00000025937.6, intron 1 of 1) protein_coding-intron (ENSMUSG00000025937.6, intron 4 of 6) 3536 ENSMUSG00000025937.6 ENSMUSG00000025937 ENSMUST00000156222 Lactb2 protein_coding Interval_125988 chr5 76603360 76603564 + 0 NA intron (ENSMUSG00000036403.15, intron 8 of 23) protein_coding-intron (ENSMUSG00000036403.15, intron 7 of 24) 14764 ENSMUSG00000036403.15 ENSMUSG00000036403 ENSMUST00000049060 Cep135 protein_coding Interval_136894 chr6 63338427 63338902 + 0 NA intron (ENSMUSG00000071424.10, intron 1 of 8) protein_coding-intron (ENSMUSG00000071424.10, intron 1 of 15) -10223 ENSMUSG00000107525.1 ENSMUSG00000107525 ENSMUST00000204180 Gm44071 antisense Interval_57795 chr15 20201975 20202588 + 0 NA Intergenic Intergenic 17449 ENSMUSG00000089320.1 ENSMUSG00000089320 ENSMUST00000158695 Gm25976 snoRNA Interval_119977 chr4 141197306 141198128 + 0 NA intron (ENSMUSG00000028920.9, intron 7 of 9) protein_coding-intron (ENSMUSG00000028920.9, intron 7 of 9) -20929 ENSMUSG00000073733.4 ENSMUSG00000073733 ENSMUST00000151475 Cplane2 protein_coding Interval_24701 chr11 35985738 35986802 + 0 NA Intergenic Intergenic -9784 ENSMUSG00000081571.1 ENSMUSG00000081571 ENSMUST00000117261 Gm12125 processed_pseudogene Interval_103512 chr3 45718278 45718566 + 0 NA Intergenic Intergenic -27518 ENSMUSG00000103534.1 ENSMUSG00000103534 ENSMUST00000193305 Gm37835 processed_pseudogene Interval_1563 chr1 26339807 26341101 + 0 NA Intergenic Intergenic -125782 ENSMUSG00000099458.1 ENSMUSG00000099458 ENSMUST00000190716 Gm19123 processed_pseudogene Interval_69099 chr16 90652362 90653332 + 0 NA Intergenic Intergenic -15480 ENSMUSG00000116591.1 ENSMUSG00000116591 ENSMUST00000231764 Gm49715 lincRNA Interval_61154 chr15 79525836 79527386 + 0 NA intron (ENSMUSG00000010830.8, intron 4 of 4) protein_coding-intron (ENSMUSG00000010830.8, intron 4 of 4) 10200 ENSMUSG00000010830.8 ENSMUSG00000010830 ENSMUST00000010974 Kdelr3 protein_coding Interval_95724 chr2 115122339 115122560 + 0 NA intron (ENSMUSG00000101448.1, intron 1 of 3) lincRNA-intron (ENSMUSG00000101448.1, intron 1 of 3) -13101 ENSMUSG00000099802.1 ENSMUSG00000099802 ENSMUST00000188427 Gm28493 lincRNA Interval_165816 chr9 53402356 53402819 + 0 NA promoter-TSS (ENSMUSG00000005131.4) protein_coding-promoter-TSS (ENSMUSG00000005131.4) -1701 ENSMUSG00000098362.1 ENSMUSG00000098362 ENSMUST00000184489 Mir130c miRNA Interval_112251 chr4 38435012 38436017 + 0 NA Intergenic Intergenic 171596 ENSMUSG00000084148.1 ENSMUSG00000084148 ENSMUST00000119012 Gm12380 processed_pseudogene Interval_154453 chr8 18023480 18024054 + 0 NA Intergenic Intergenic 251054 ENSMUSG00000088320.1 ENSMUSG00000088320 ENSMUST00000157695 Gm25665 snoRNA Interval_44107 chr13 40924007 40925420 + 0 NA intron (ENSMUSG00000021360.16, intron 1 of 1) protein_coding-intron (ENSMUSG00000021360.16, intron 1 of 2) -6818 ENSMUSG00000114662.1 ENSMUSG00000114662 ENSMUST00000224935 Gm31683 antisense Interval_34022 chr11 120067881 120068566 + 0 NA promoter-TSS (ENSMUSG00000039781.14) protein_coding-promoter-TSS (ENSMUSG00000039781.14) 15 ENSMUSG00000093075.1 ENSMUSG00000093075 ENSMUST00000175334 Gm25948 miRNA Interval_75176 chr17 64390022 64390981 + 0 NA Intergenic Intergenic -50305 ENSMUSG00000098984.1 ENSMUSG00000098984 ENSMUST00000185032 Mir6420 miRNA Interval_126518 chr5 89500098 89500592 + 0 NA promoter-TSS (ENSMUSG00000106534.1) processed_pseudogene-promoter-TSS (ENSMUSG00000106534.1) -368 ENSMUSG00000106534.1 ENSMUSG00000106534 ENSMUST00000198766 Gm6366 processed_pseudogene Interval_31002 chr11 97660090 97660770 + 0 NA promoter-TSS (ENSMUSG00000085586.1) processed_transcript-promoter-TSS (ENSMUSG00000085586.1) -63 ENSMUSG00000085586.1 ENSMUSG00000085586 ENSMUST00000134427 Gm11613 processed_transcript Interval_137457 chr6 72560918 72561241 + 0 NA exon (ENSMUSG00000056737.14, exon 9 of 10) protein_coding-exon (ENSMUSG00000056737.14, exon 9 of 10) 11621 ENSMUSG00000056737.14 ENSMUSG00000056737 ENSMUST00000127770 Capg protein_coding Interval_154900 chr8 24935919 24936151 + 0 NA intron (ENSMUSG00000037437.18, intron 2 of 8) protein_coding-intron (ENSMUSG00000037437.18, intron 2 of 19) -2265 ENSMUSG00000088736.1 ENSMUSG00000088736 ENSMUST00000158111 Gm23898 snRNA Interval_17137 chr10 72056887 72057188 + 0 NA intron (ENSMUSG00000112414.1, intron 2 of 5) lincRNA-intron (ENSMUSG00000112414.1, intron 2 of 5) 30055 ENSMUSG00000112414.1 ENSMUSG00000112414 ENSMUST00000219284 Gm34609 lincRNA Interval_129525 chr5 120710293 120712091 + 0 NA intron (ENSMUSG00000029603.15, intron 1 of 9) protein_coding-intron (ENSMUSG00000029603.15, intron 1 of 9) 24383 ENSMUSG00000032690.16 ENSMUSG00000032690 ENSMUST00000146101 Oas2 protein_coding Interval_108118 chr3 121617527 121618699 + 0 NA Intergenic Intergenic 25254 ENSMUSG00000044522.8 ENSMUSG00000044522 ENSMUST00000198402 A730020M07Rik lincRNA Interval_95693 chr2 114200749 114201853 + 0 NA intron (ENSMUSG00000040321.3, intron 1 of 1) protein_coding-intron (ENSMUSG00000040321.3, intron 1 of 1) 139 ENSMUSG00000040321.3 ENSMUSG00000040321 ENSMUST00000123562 Zfp770 protein_coding Interval_152143 chr7 130073935 130074722 + 0 NA Intergenic Intergenic 39234 ENSMUSG00000065763.1 ENSMUSG00000065763 ENSMUST00000083829 Gm23847 snRNA Interval_154779 chr8 23294986 23295265 + 0 NA Intergenic Intergenic -4961 ENSMUSG00000077399.1 ENSMUSG00000077399 ENSMUST00000104211 Gm24335 snoRNA Interval_81778 chr18 64618312 64620101 + 0 NA intron (ENSMUSG00000039529.9, intron 1 of 4) protein_coding-intron (ENSMUSG00000039529.9, intron 1 of 27) -6107 ENSMUSG00000118133.1 ENSMUSG00000118133 ENSMUST00000238142 Gm6978 transcribed_processed_pseudogene Interval_163559 chr9 22099171 22100595 + 0 NA promoter-TSS (ENSMUSG00000001349.5) protein_coding-promoter-TSS (ENSMUSG00000001349.5) -1178 ENSMUSG00000001349.5 ENSMUSG00000001349 ENSMUST00000216141 Cnn1 protein_coding Interval_56640 chr14 121061558 121062733 + 0 NA intron (ENSMUSG00000025555.14, intron 1 of 26) protein_coding-intron (ENSMUSG00000025555.14, intron 1 of 26) -39934 ENSMUSG00000025555.14 ENSMUSG00000025555 ENSMUST00000137971 Farp1 protein_coding Interval_38157 chr12 76021890 76022130 + 0 NA promoter-TSS (ENSMUSG00000063450.14) protein_coding-promoter-TSS (ENSMUSG00000063450.14) 112907 ENSMUSG00000092922.1 ENSMUSG00000092922 ENSMUST00000175181 Mir5101 miRNA Interval_76655 chr17 83214257 83216280 + 0 NA promoter-TSS (ENSMUSG00000024247.14) protein_coding-promoter-TSS (ENSMUSG00000024247.14) -24 ENSMUSG00000024247.14 ENSMUSG00000024247 ENSMUST00000168118 Pkdcc protein_coding Interval_58302 chr15 32034787 32035246 + 0 NA Intergenic Intergenic -14935 ENSMUSG00000115561.1 ENSMUSG00000115561 ENSMUST00000227417 Gm49285 TEC Interval_28157 chr11 73302962 73303337 + 0 NA Intergenic Intergenic 26447 ENSMUSG00000020774.9 ENSMUSG00000020774 ENSMUST00000141898 Aspa protein_coding Interval_106778 chr3 100715972 100716801 + 0 NA Intergenic Intergenic 22327 ENSMUSG00000087759.1 ENSMUSG00000087759 ENSMUST00000157134 Gm23465 misc_RNA Interval_36450 chr12 44957224 44958077 + 0 NA intron (ENSMUSG00000046314.16, intron 2 of 2) protein_coding-intron (ENSMUSG00000046314.16, intron 2 of 5) 7243 ENSMUSG00000086012.2 ENSMUSG00000086012 ENSMUST00000219623 Gm15902 sense_intronic Interval_162522 chr9 3737619 3737854 + 0 NA intron (ENSMUSG00000041624.10, intron 4 of 4) protein_coding-intron (ENSMUSG00000041624.10, intron 4 of 7) 204848 ENSMUSG00000041624.10 ENSMUSG00000041624 ENSMUST00000212705 Gucy1a2 protein_coding Interval_109708 chr3 146180222 146181552 + 0 NA intron (ENSMUSG00000011008.13, intron 8 of 13) protein_coding-intron (ENSMUSG00000011008.13, intron 8 of 13) -9478 ENSMUSG00000011008.13 ENSMUSG00000011008 ENSMUST00000169984 Mcoln2 protein_coding Interval_84498 chr19 11900936 11901241 + 0 NA Intergenic Intergenic -11355 ENSMUSG00000046139.8 ENSMUSG00000046139 ENSMUST00000238190 Patl1 protein_coding Interval_70495 chr17 10937744 10938759 + 0 NA intron (ENSMUSG00000023826.16, intron 1 of 10) protein_coding-intron (ENSMUSG00000023826.16, intron 1 of 6) 39256 ENSMUSG00000099797.1 ENSMUSG00000099797 ENSMUST00000188584 Gm3145 processed_pseudogene Interval_86964 chr19 45233636 45236945 + 0 NA exon (ENSMUSG00000025216.9, exon 1 of 2) protein_coding-exon (ENSMUSG00000025216.9, exon 1 of 2) 522 ENSMUSG00000025216.9 ENSMUSG00000025216 ENSMUST00000099401 Lbx1 protein_coding Interval_30525 chr11 94942287 94942567 + 0 NA exon (ENSMUSG00000001506.10, exon 19 of 51) protein_coding-exon (ENSMUSG00000001506.10, exon 19 of 51) 3415 ENSMUSG00000001506.10 ENSMUSG00000001506 ENSMUST00000148046 Col1a1 protein_coding Interval_122333 chr5 21424516 21425515 + 0 NA promoter-TSS (ENSMUSG00000064280.14) protein_coding-promoter-TSS (ENSMUSG00000064280.14) 14 ENSMUSG00000047221.5 ENSMUSG00000047221 ENSMUST00000146056 Fam185a protein_coding Interval_69693 chr16 95605448 95605726 + 0 NA Intergenic Intergenic -75222 ENSMUSG00000040732.20 ENSMUSG00000040732 ENSMUST00000121809 Erg protein_coding Interval_168198 chr9 77923610 77923850 + 0 NA intron (ENSMUSG00000032349.13, intron 1 of 5) protein_coding-intron (ENSMUSG00000032349.13, intron 1 of 7) 6296 ENSMUSG00000032349.13 ENSMUSG00000032349 ENSMUST00000134072 Elovl5 protein_coding Interval_81563 chr18 61706379 61708111 + 0 NA intron (ENSMUSG00000024579.7, intron 1 of 4) protein_coding-intron (ENSMUSG00000024579.7, intron 1 of 5) 368 ENSMUSG00000024579.7 ENSMUSG00000024579 ENSMUST00000154763 Pcyox1l protein_coding Interval_7887 chr1 134384300 134385949 + 0 NA promoter-TSS (ENSMUSG00000050526.5) protein_coding-promoter-TSS (ENSMUSG00000050526.5) -816 ENSMUSG00000050526.5 ENSMUSG00000050526 ENSMUST00000162187 Mgat4f protein_coding Interval_32859 chr11 112209436 112209832 + 0 NA Intergenic Intergenic 102196 ENSMUSG00000085324.1 ENSMUSG00000085324 ENSMUST00000146550 Gm11680 lincRNA Interval_95393 chr2 107945944 107946293 + 0 NA Intergenic Intergenic -59479 ENSMUSG00000077480.1 ENSMUSG00000077480 ENSMUST00000104292 Gm23439 snoRNA Interval_126106 chr5 77431210 77431416 + 0 NA Intergenic Intergenic -2721 ENSMUSG00000106906.1 ENSMUSG00000106906 ENSMUST00000201510 Gm34728 lincRNA Interval_110594 chr4 4402848 4403082 + 0 NA Intergenic Intergenic 125754 ENSMUSG00000085155.3 ENSMUSG00000085155 ENSMUST00000136880 Gm11780 processed_pseudogene Interval_9877 chr1 163700828 163701077 + 0 NA Intergenic Intergenic 24280 ENSMUSG00000040113.14 ENSMUSG00000040113 ENSMUST00000160495 Mettl11b protein_coding Interval_117557 chr4 124672183 124672404 + 0 NA Intergenic Intergenic -15124 ENSMUSG00000098760.1 ENSMUSG00000098760 ENSMUST00000184062 Gm2164 antisense Interval_75938 chr17 73251056 73252076 + 0 NA promoter-TSS (ENSMUSG00000117292.1) lincRNA-promoter-TSS (ENSMUSG00000117292.1) -979 ENSMUSG00000117292.1 ENSMUSG00000117292 ENSMUST00000233479 E330032C10Rik lincRNA Interval_89398 chr2 20437381 20437665 + 0 NA intron (ENSMUSG00000036617.17, intron 2 of 3) protein_coding-intron (ENSMUSG00000036617.17, intron 3 of 7) -4589 ENSMUSG00000085477.7 ENSMUSG00000085477 ENSMUST00000149398 Gm13335 antisense Interval_122218 chr5 20142844 20143036 + 0 NA intron (ENSMUSG00000040003.18, intron 3 of 3) protein_coding-intron (ENSMUSG00000040003.18, intron 3 of 22) -28493 ENSMUSG00000077171.1 ENSMUSG00000077171 ENSMUST00000103983 Gm25761 snoRNA Interval_128808 chr5 115382354 115382787 + 0 NA intron (ENSMUSG00000087292.1, intron 2 of 2) lincRNA-intron (ENSMUSG00000087292.1, intron 2 of 2) -22447 ENSMUSG00000086352.1 ENSMUSG00000086352 ENSMUST00000139500 4930401G09Rik lincRNA Interval_6631 chr1 118411538 118411793 + 0 NA intron (ENSMUSG00000064302.13, intron 1 of 38) protein_coding-intron (ENSMUSG00000064302.13, intron 1 of 39) 41820 ENSMUSG00000077257.1 ENSMUSG00000077257 ENSMUST00000104069 Gm26080 snoRNA Interval_159097 chr8 90496689 90497469 + 0 NA Intergenic Intergenic -148948 ENSMUSG00000043668.13 ENSMUSG00000043668 ENSMUST00000176034 Tox3 protein_coding Interval_19852 chr10 110455123 110456412 + 0 NA exon (ENSMUSG00000020181.18, exon 1 of 5) protein_coding-exon (ENSMUSG00000020181.18, exon 1 of 5) 437 ENSMUSG00000020181.18 ENSMUSG00000020181 ENSMUST00000160159 Nav3 protein_coding Interval_11250 chr1 180471003 180471202 + 0 NA intron (ENSMUSG00000053963.7, intron 1 of 2) protein_coding-intron (ENSMUSG00000053963.7, intron 1 of 3) -5221 ENSMUSG00000053963.7 ENSMUSG00000053963 ENSMUST00000211782 Stum protein_coding Interval_38850 chr12 83387462 83388383 + 0 NA intron (ENSMUSG00000021221.15, intron 1 of 10) protein_coding-intron (ENSMUSG00000021221.15, intron 1 of 8) 99794 ENSMUSG00000021221.15 ENSMUSG00000021221 ENSMUST00000177801 Dpf3 protein_coding Interval_44100 chr13 40893483 40893885 + 0 NA intron (ENSMUSG00000021360.16, intron 1 of 2) protein_coding-intron (ENSMUSG00000021360.16, intron 1 of 2) 18523 ENSMUSG00000114601.1 ENSMUSG00000114601 ENSMUST00000225964 Gm48188 processed_pseudogene Interval_150419 chr7 110286538 110287265 + 0 NA Intergenic Intergenic -5374 ENSMUSG00000109799.1 ENSMUSG00000109799 ENSMUST00000210796 Gm45515 antisense Interval_63280 chr15 100070255 100070787 + 0 NA intron (ENSMUSG00000023026.16, intron 1 of 37) protein_coding-intron (ENSMUSG00000023026.16, intron 1 of 37) 21236 ENSMUSG00000116021.1 ENSMUSG00000116021 ENSMUST00000230449 Gm49474 TEC Interval_91700 chr2 48417253 48417495 + 0 NA intron (ENSMUSG00000086353.1, intron 1 of 5) lincRNA-intron (ENSMUSG00000086353.1, intron 1 of 5) 29337 ENSMUSG00000083866.1 ENSMUSG00000083866 ENSMUST00000120948 Gm13472 processed_pseudogene Interval_147192 chr7 64292699 64292930 + 0 NA intron (ENSMUSG00000030522.14, intron 2 of 4) protein_coding-intron (ENSMUSG00000030522.14, intron 2 of 15) -4604 ENSMUSG00000108472.1 ENSMUSG00000108472 ENSMUST00000205831 Gm45212 TEC Interval_117602 chr4 124951955 124952799 + 0 NA Intergenic Intergenic 9246 ENSMUSG00000044730.17 ENSMUSG00000044730 ENSMUST00000233875 9930104L06Rik protein_coding Interval_88388 chr2 4643069 4643275 + 0 NA TTS (ENSMUSG00000039449.14) protein_coding-TTS (ENSMUSG00000039449.14) 8909 ENSMUSG00000039449.14 ENSMUSG00000039449 ENSMUST00000144650 Prpf18 protein_coding Interval_5795 chr1 91912166 91914240 + 0 NA Intergenic Intergenic -3057 ENSMUSG00000102745.1 ENSMUSG00000102745 ENSMUST00000193764 Gm37600 TEC Interval_56161 chr14 108913551 108914133 + 0 NA exon (ENSMUSG00000075478.3, exon 1 of 1) protein_coding-exon (ENSMUSG00000075478.3, exon 1 of 1) 316 ENSMUSG00000075478.3 ENSMUSG00000075478 ENSMUST00000100322 Slitrk1 protein_coding Interval_102888 chr3 32537426 32537828 + 0 NA intron (ENSMUSG00000027668.13, intron 3 of 6) protein_coding-intron (ENSMUSG00000027668.13, intron 3 of 17) -25283 ENSMUSG00000104231.1 ENSMUSG00000104231 ENSMUST00000192741 Gm37592 antisense Interval_6804 chr1 119642178 119643482 + 0 NA intron (ENSMUSG00000026383.14, intron 1 of 16) protein_coding-intron (ENSMUSG00000026383.14, intron 1 of 16) -11161 ENSMUSG00000102687.1 ENSMUSG00000102687 ENSMUST00000192036 Gm37219 TEC Interval_168034 chr9 75515334 75516418 + 0 NA TTS (ENSMUSG00000058587.9) protein_coding-TTS (ENSMUSG00000058587.9) 4626 ENSMUSG00000111228.1 ENSMUSG00000111228 ENSMUST00000215151 Gm48789 processed_pseudogene Interval_2536 chr1 40027403 40028171 + 0 NA Intergenic Intergenic 22581 ENSMUSG00000102985.1 ENSMUSG00000102985 ENSMUST00000193054 4930456G14Rik TEC Interval_167287 chr9 67043309 67044164 + 0 NA promoter-TSS (ENSMUSG00000032366.15) protein_coding-promoter-TSS (ENSMUSG00000032366.15) -10911 ENSMUSG00000032366.15 ENSMUSG00000032366 ENSMUST00000131279 Tpm1 protein_coding Interval_164361 chr9 35874360 35874621 + 0 NA Intergenic Intergenic -24237 ENSMUSG00000098705.8 ENSMUSG00000098705 ENSMUST00000184555 Gm3428 processed_transcript Interval_7548 chr1 132138081 132140473 + 0 NA promoter-TSS (ENSMUSG00000099874.1) antisense-promoter-TSS (ENSMUSG00000099874.1) -227 ENSMUSG00000099874.1 ENSMUSG00000099874 ENSMUST00000187926 Gm29629 antisense Interval_47278 chr13 80519958 80520404 + 0 NA Intergenic Intergenic 27172 ENSMUSG00000114528.1 ENSMUSG00000114528 ENSMUST00000223876 Gm46388 processed_pseudogene Interval_15808 chr10 57349292 57349550 + 0 NA Intergenic Intergenic -37002 ENSMUSG00000111969.1 ENSMUSG00000111969 ENSMUST00000218173 Gm9129 processed_pseudogene Interval_146319 chr7 45325810 45326022 + 0 NA TTS (ENSMUSG00000046721.11) processed_pseudogene-TTS (ENSMUSG00000046721.11) 951 ENSMUSG00000046721.11 ENSMUSG00000046721 ENSMUST00000026901 Rpl14-ps1 processed_pseudogene Interval_103453 chr3 41648300 41648538 + 0 NA exon (ENSMUSG00000102436.1, exon 1 of 1) TEC-exon (ENSMUSG00000102436.1, exon 1 of 1) 831 ENSMUSG00000102436.1 ENSMUSG00000102436 ENSMUST00000193690 Gm38047 TEC Interval_9635 chr1 160548270 160548936 + 0 NA intron (ENSMUSG00000026721.16, intron 13 of 20) protein_coding-intron (ENSMUSG00000026721.16, intron 13 of 20) 25207 ENSMUSG00000104026.1 ENSMUSG00000104026 ENSMUST00000192582 Gm37212 TEC Interval_161580 chr8 121358483 121359628 + 0 NA intron (ENSMUSG00000092329.1, intron 1 of 15) protein_coding-intron (ENSMUSG00000092329.1, intron 1 of 15) -2219 ENSMUSG00000097384.1 ENSMUSG00000097384 ENSMUST00000181200 Gm26815 lincRNA Interval_105806 chr3 89424667 89425347 + 0 NA TTS (ENSMUSG00000042626.13) protein_coding-TTS (ENSMUSG00000042626.13) -5417 ENSMUSG00000047824.13 ENSMUSG00000047824 ENSMUST00000125830 Pygo2 protein_coding Interval_136620 chr6 56740349 56741902 + 0 NA exon (ENSMUSG00000029787.10, exon 1 of 5) protein_coding-exon (ENSMUSG00000029787.10, exon 1 of 5) 26226 ENSMUSG00000029787.10 ENSMUSG00000029787 ENSMUST00000176560 Avl9 protein_coding Interval_161792 chr8 122830399 122830932 + 0 NA intron (ENSMUSG00000092329.1, intron 1 of 15) protein_coding-intron (ENSMUSG00000092329.1, intron 1 of 15) 4579 ENSMUSG00000110540.1 ENSMUSG00000110540 ENSMUST00000212701 Gm45743 TEC Interval_132458 chr5 145071186 145071614 + 0 NA intron (ENSMUSG00000038770.17, intron 4 of 7) protein_coding-intron (ENSMUSG00000038770.17, intron 4 of 7) 3883 ENSMUSG00000118480.1 ENSMUSG00000118480 ENSMUST00000238523 Gm50458 unitary_pseudogene Interval_102707 chr3 30465783 30466677 + 0 NA intron (ENSMUSG00000027684.16, intron 2 of 8) protein_coding-intron (ENSMUSG00000027684.16, intron 1 of 11) -22196 ENSMUSG00000104079.1 ENSMUSG00000104079 ENSMUST00000192224 Gm37024 TEC Interval_37878 chr12 72760361 72762034 + 0 NA promoter-TSS (ENSMUSG00000021096.11) protein_coding-promoter-TSS (ENSMUSG00000021096.11) -118 ENSMUSG00000021096.11 ENSMUSG00000021096 ENSMUST00000222920 Ppm1a protein_coding Interval_7597 chr1 132417077 132418242 + 0 NA promoter-TSS (ENSMUSG00000042046.15) protein_coding-promoter-TSS (ENSMUSG00000042046.15) 36530 ENSMUSG00000090079.1 ENSMUSG00000090079 ENSMUST00000159257 Gm15849 antisense Interval_85918 chr19 33138890 33139077 + 0 NA intron (ENSMUSG00000071573.14, intron 4 of 4) polymorphic_pseudogene-intron (ENSMUSG00000071573.14, intron 6 of 6) 16336 ENSMUSG00000118196.1 ENSMUSG00000118196 ENSMUST00000237929 Gm29946 lincRNA Interval_126438 chr5 88583264 88584294 + 0 NA promoter-TSS (ENSMUSG00000029291.11) protein_coding-promoter-TSS (ENSMUSG00000029291.11) 29317 ENSMUSG00000070697.4 ENSMUSG00000070697 ENSMUST00000090413 Utp3 protein_coding Interval_87309 chr19 47536648 47537864 + 0 NA promoter-TSS (ENSMUSG00000042694.17) protein_coding-promoter-TSS (ENSMUSG00000042694.17) -232 ENSMUSG00000042694.17 ENSMUSG00000042694 ENSMUST00000183283 Stn1 protein_coding Interval_78251 chr18 10793338 10794759 + 0 NA intron (ENSMUSG00000024294.14, intron 14 of 21) protein_coding-intron (ENSMUSG00000024294.14, intron 13 of 20) -8165 ENSMUSG00000095438.1 ENSMUSG00000095438 ENSMUST00000179771 Mir133a-1hg antisense Interval_128182 chr5 111573199 111574438 + 0 NA Intergenic Intergenic -7743 ENSMUSG00000052848.7 ENSMUSG00000052848 ENSMUST00000198458 C130026L21Rik lincRNA Interval_150091 chr7 105761651 105763306 + 0 NA exon (ENSMUSG00000036862.15, exon 10 of 21) protein_coding-exon (ENSMUSG00000036862.15, exon 10 of 21) -10386 ENSMUSG00000030894.5 ENSMUSG00000030894 ENSMUST00000211560 Tpp1 protein_coding Interval_127164 chr5 100757843 100758747 + 0 NA Intergenic Intergenic 34431 ENSMUSG00000035266.16 ENSMUSG00000035266 ENSMUST00000144948 Helq protein_coding Interval_131050 chr5 134756500 134756721 + 0 NA intron (ENSMUSG00000107318.1, intron 1 of 4) antisense-intron (ENSMUSG00000107318.1, intron 1 of 4) 9568 ENSMUSG00000107318.1 ENSMUSG00000107318 ENSMUST00000200700 Gm30003 antisense Interval_10787 chr1 174789325 174789534 + 0 NA intron (ENSMUSG00000028354.13, intron 3 of 5) protein_coding-intron (ENSMUSG00000028354.13, intron 15 of 17) 132390 ENSMUSG00000050069.3 ENSMUSG00000050069 ENSMUST00000055294 Grem2 protein_coding Interval_14635 chr10 37267007 37267246 + 0 NA Intergenic Intergenic -3378 ENSMUSG00000110799.1 ENSMUSG00000110799 ENSMUST00000217044 4930543K20Rik lincRNA Interval_144137 chr7 19593274 19594507 + 0 NA TTS (ENSMUSG00000061028.7) protein_coding-TTS (ENSMUSG00000061028.7) -8032 ENSMUSG00000061028.7 ENSMUSG00000061028 ENSMUST00000207325 Clasrp protein_coding Interval_82087 chr18 67662299 67662846 + 0 NA Intergenic Intergenic 20964 ENSMUSG00000024537.5 ENSMUSG00000024537 ENSMUST00000236522 Psmg2 protein_coding Interval_1916 chr1 34528928 34529146 + 0 NA Intergenic Intergenic -5030 ENSMUSG00000101116.1 ENSMUSG00000101116 ENSMUST00000188334 Gm28416 processed_pseudogene Interval_135009 chr6 34525904 34526145 + 0 NA Intergenic Intergenic -7529 ENSMUSG00000085187.1 ENSMUSG00000085187 ENSMUST00000125185 Gm13860 lincRNA Interval_131462 chr5 137380949 137382406 + 0 NA intron (ENSMUSG00000079173.11, intron 83 of 86) protein_coding-intron (ENSMUSG00000079173.11, intron 84 of 87) 20061 ENSMUSG00000079173.11 ENSMUSG00000079173 ENSMUST00000130056 Zan protein_coding Interval_130353 chr5 126572929 126573139 + 0 NA Intergenic Intergenic -59053 ENSMUSG00000084551.1 ENSMUSG00000084551 ENSMUST00000122602 Gm24839 snRNA Interval_167907 chr9 74069373 74069636 + 0 NA Intergenic Intergenic 10165 ENSMUSG00000095631.1 ENSMUSG00000095631 ENSMUST00000083215 n-R5s86 rRNA Interval_148978 chr7 90606519 90606893 + 0 NA intron (ENSMUSG00000052572.19, intron 3 of 27) protein_coding-intron (ENSMUSG00000052572.19, intron 3 of 27) -130711 ENSMUSG00000030614.8 ENSMUSG00000030614 ENSMUST00000123622 Tmem126b protein_coding Interval_90469 chr2 30657660 30659184 + 0 NA TTS (ENSMUSG00000087268.1) lincRNA-TTS (ENSMUSG00000087268.1) 11486 ENSMUSG00000087268.1 ENSMUSG00000087268 ENSMUST00000144704 Gm14486 lincRNA Interval_96128 chr2 119936478 119936931 + 0 NA intron (ENSMUSG00000033943.15, intron 13 of 20) protein_coding-intron (ENSMUSG00000033943.15, intron 13 of 24) -36199 ENSMUSG00000033902.12 ENSMUSG00000033902 ENSMUST00000148161 Mapkbp1 protein_coding Interval_143516 chr7 11561318 11561944 + 0 NA TTS (ENSMUSG00000110307.1) processed_pseudogene-TTS (ENSMUSG00000110307.1) 1242 ENSMUSG00000110307.1 ENSMUSG00000110307 ENSMUST00000209803 Gm3816 processed_pseudogene Interval_8107 chr1 135759862 135760626 + 0 NA Intergenic Intergenic -6890 ENSMUSG00000041801.5 ENSMUSG00000041801 ENSMUST00000136445 Phlda3 protein_coding Interval_161535 chr8 121051739 121052014 + 0 NA intron (ENSMUSG00000092329.1, intron 1 of 15) protein_coding-intron (ENSMUSG00000092329.1, intron 1 of 15) 31234 ENSMUSG00000097336.8 ENSMUSG00000097336 ENSMUST00000182264 Fendrr processed_transcript Interval_105136 chr3 82340218 82340415 + 0 NA Intergenic Intergenic -39757 ENSMUSG00000033900.13 ENSMUSG00000033900 ENSMUST00000195793 Map9 protein_coding Interval_40727 chr12 107965232 107965878 + 0 NA intron (ENSMUSG00000048251.15, intron 1 of 1) protein_coding-intron (ENSMUSG00000048251.15, intron 3 of 3) 37859 ENSMUSG00000048251.15 ENSMUSG00000048251 ENSMUST00000109891 Bcl11b protein_coding Interval_133157 chr5 150246637 150247099 + 0 NA intron (ENSMUSG00000056602.12, intron 1 of 3) protein_coding-intron (ENSMUSG00000056602.12, intron 2 of 4) 3005 ENSMUSG00000107082.1 ENSMUSG00000107082 ENSMUST00000201709 Gm36378 processed_pseudogene Interval_38417 chr12 78890924 78891378 + 0 NA intron (ENSMUSG00000021118.7, intron 7 of 8) protein_coding-intron (ENSMUSG00000021118.7, intron 7 of 8) 15813 ENSMUSG00000021118.7 ENSMUSG00000021118 ENSMUST00000021544 Plek2 protein_coding Interval_171060 chr9 114057021 114058048 + 0 NA exon (ENSMUSG00000086596.2, exon 1 of 5) protein_coding-exon (ENSMUSG00000086596.2, exon 1 of 5) 394 ENSMUSG00000086596.2 ENSMUSG00000086596 ENSMUST00000135338 Susd5 protein_coding Interval_64473 chr16 11769905 11770152 + 0 NA Intergenic Intergenic -8401 ENSMUSG00000115936.1 ENSMUSG00000115936 ENSMUST00000229695 4833415N18Rik lincRNA Interval_85086 chr19 22554332 22554945 + 0 NA intron (ENSMUSG00000052387.16, intron 1 of 24) protein_coding-intron (ENSMUSG00000052387.16, intron 1 of 26) -105773 ENSMUSG00000098739.1 ENSMUSG00000098739 ENSMUST00000185015 Gm27151 antisense Interval_157366 chr8 69890896 69891210 + 0 NA intron (ENSMUSG00000048967.16, intron 1 of 5) protein_coding-intron (ENSMUSG00000048967.16, intron 1 of 5) -3366 ENSMUSG00000044006.8 ENSMUSG00000044006 ENSMUST00000057831 Cilp2 protein_coding Interval_52152 chr14 37174663 37175077 + 0 NA Intergenic Intergenic 8195 ENSMUSG00000114675.1 ENSMUSG00000114675 ENSMUST00000224221 Gm18834 processed_pseudogene Interval_109008 chr3 134827849 134830115 + 0 NA promoter-TSS (ENSMUSG00000028172.5) protein_coding-promoter-TSS (ENSMUSG00000028172.5) -25 ENSMUSG00000028172.5 ENSMUSG00000028172 ENSMUST00000029822 Tacr3 protein_coding Interval_85201 chr19 23706312 23706716 + 0 NA intron (ENSMUSG00000074925.4, intron 4 of 6) protein_coding-intron (ENSMUSG00000074925.4, intron 4 of 5) 19085 ENSMUSG00000074925.4 ENSMUSG00000074925 ENSMUST00000067077 Ptar1 protein_coding Interval_50864 chr14 20305040 20305348 + 0 NA intron (ENSMUSG00000021809.10, intron 3 of 7) protein_coding-intron (ENSMUSG00000021809.10, intron 3 of 8) -6235 ENSMUSG00000021809.10 ENSMUSG00000021809 ENSMUST00000225728 Nudt13 protein_coding Interval_3866 chr1 63994370 63994818 + 0 NA Intergenic Intergenic 29867 ENSMUSG00000044689.5 ENSMUSG00000044689 ENSMUST00000133244 Gm13749 lincRNA Interval_100634 chr2 170624171 170625225 + 0 NA Intergenic Intergenic -22681 ENSMUSG00000043583.1 ENSMUSG00000043583 ENSMUST00000062355 4930470P17Rik protein_coding Interval_89660 chr2 24213515 24213881 + 0 NA Intergenic Intergenic -1807 ENSMUSG00000026984.4 ENSMUSG00000026984 ENSMUST00000144442 Il1f6 protein_coding Interval_155869 chr8 40491552 40492330 + 0 NA TTS (ENSMUSG00000031601.16) protein_coding-TTS (ENSMUSG00000031601.16) 19363 ENSMUSG00000031601.16 ENSMUSG00000031601 ENSMUST00000139558 Cnot7 protein_coding Interval_37478 chr12 69227823 69229689 + 0 NA promoter-TSS (ENSMUSG00000020974.6) protein_coding-promoter-TSS (ENSMUSG00000020974.6) 830 ENSMUSG00000113190.1 ENSMUSG00000113190 ENSMUST00000220745 Gm47545 antisense Interval_49483 chr13 112364819 112366528 + 0 NA intron (ENSMUSG00000114536.1, intron 1 of 4) protein_coding-intron (ENSMUSG00000049985.15, intron 8 of 10) 2172 ENSMUSG00000114536.1 ENSMUSG00000114536 ENSMUST00000224393 Gm48837 antisense Interval_29398 chr11 83733117 83733469 + 0 NA Intergenic Intergenic -13647 ENSMUSG00000051748.2 ENSMUSG00000051748 ENSMUST00000070832 Wfdc21 protein_coding Interval_30907 chr11 97174533 97175342 + 0 NA intron (ENSMUSG00000001440.5, intron 9 of 21) protein_coding-intron (ENSMUSG00000001440.5, intron 9 of 21) -9537 ENSMUSG00000001440.5 ENSMUSG00000001440 ENSMUST00000153727 Kpnb1 protein_coding Interval_158833 chr8 86960405 86961658 + 0 NA Intergenic Intergenic 4588 ENSMUSG00000088261.1 ENSMUSG00000088261 ENSMUST00000157636 Gm24781 snoRNA Interval_87123 chr19 46314153 46314990 + 0 NA promoter-TSS (ENSMUSG00000037126.16) protein_coding-promoter-TSS (ENSMUSG00000037126.16) -267 ENSMUSG00000037126.16 ENSMUSG00000037126 ENSMUST00000225072 Psd protein_coding Interval_23588 chr11 23590286 23590582 + 0 NA intron (ENSMUSG00000042208.15, intron 14 of 21) protein_coding-intron (ENSMUSG00000042208.15, intron 12 of 19) -31592 ENSMUSG00000085415.1 ENSMUSG00000085415 ENSMUST00000125204 Selenok-ps1 processed_transcript Interval_145917 chr7 41668478 41668804 + 0 NA promoter-TSS (ENSMUSG00000091401.1) processed_pseudogene-promoter-TSS (ENSMUSG00000091401.1) -523 ENSMUSG00000091401.1 ENSMUSG00000091401 ENSMUST00000172364 Gm9252 processed_pseudogene Interval_25658 chr11 50487141 50488257 + 0 NA Intergenic Intergenic 23478 ENSMUSG00000089366.1 ENSMUSG00000089366 ENSMUST00000158741 Gm23824 misc_RNA Interval_2615 chr1 42255486 42255682 + 0 NA Intergenic Intergenic -6273 ENSMUSG00000101299.2 ENSMUSG00000101299 ENSMUST00000209336 Gm28175 lincRNA Interval_14282 chr10 30367010 30367214 + 0 NA Intergenic Intergenic -5806 ENSMUSG00000111047.1 ENSMUSG00000111047 ENSMUST00000213206 Gm4780 transcribed_processed_pseudogene Interval_113872 chr4 59495870 59496422 + 0 NA intron (ENSMUSG00000028382.15, intron 5 of 11) protein_coding-intron (ENSMUSG00000028382.15, intron 5 of 13) -36601 ENSMUSG00000080831.1 ENSMUSG00000080831 ENSMUST00000119529 Gm12529 processed_pseudogene Interval_51542 chr14 29997962 29999790 + 0 NA promoter-TSS (ENSMUSG00000015966.17) protein_coding-promoter-TSS (ENSMUSG00000015966.17) -417 ENSMUSG00000015966.17 ENSMUSG00000015966 ENSMUST00000225746 Il17rb protein_coding Interval_163909 chr9 28255185 28256173 + 0 NA intron (ENSMUSG00000062257.13, intron 1 of 7) protein_coding-intron (ENSMUSG00000062257.13, intron 1 of 7) -37069 ENSMUSG00000106021.1 ENSMUSG00000106021 ENSMUST00000199274 Gm44316 miRNA Interval_174282 chrX 143142873 143143672 + 0 NA Intergenic Intergenic 41265 ENSMUSG00000083089.1 ENSMUSG00000083089 ENSMUST00000119663 Gm4760 processed_pseudogene Interval_86282 chr19 38363760 38364324 + 0 NA Intergenic Intergenic -21428 ENSMUSG00000118381.1 ENSMUSG00000118381 ENSMUST00000237671 Gm50150 processed_pseudogene Interval_15183 chr10 43200047 43200697 + 0 NA Intergenic Intergenic -21364 ENSMUSG00000038240.13 ENSMUSG00000038240 ENSMUST00000162008 Pdss2 protein_coding Interval_93283 chr2 71673067 71674243 + 0 NA Intergenic Intergenic -45762 ENSMUSG00000064263.6 ENSMUSG00000064263 ENSMUST00000079720 Platr26 lincRNA Interval_82463 chr18 74231349 74231566 + 0 NA Intergenic Intergenic -9433 ENSMUSG00000118151.1 ENSMUSG00000118151 ENSMUST00000238110 Gm5690 processed_pseudogene Interval_39514 chr12 89106140 89107239 + 0 NA intron (ENSMUSG00000066392.12, intron 2 of 19) protein_coding-intron (ENSMUSG00000066392.12, intron 2 of 19) 148672 ENSMUSG00000103136.1 ENSMUSG00000103136 ENSMUST00000194420 Gm37980 TEC Interval_48009 chr13 95067887 95068091 + 0 NA intron (ENSMUSG00000021684.17, intron 7 of 18) protein_coding-intron (ENSMUSG00000021684.17, intron 9 of 20) 43688 ENSMUSG00000113070.1 ENSMUSG00000113070 ENSMUST00000220923 Gm48420 antisense Interval_24486 chr11 33613964 33614514 + 0 NA intron (ENSMUSG00000073052.4, intron 1 of 3) lincRNA-intron (ENSMUSG00000073052.4, intron 1 of 3) 6259 ENSMUSG00000073052.4 ENSMUSG00000073052 ENSMUST00000238565 D130052B06Rik lincRNA Interval_102307 chr3 21626225 21627831 + 0 NA Intergenic Intergenic -21359 ENSMUSG00000106460.1 ENSMUSG00000106460 ENSMUST00000196649 Gm17935 processed_pseudogene Interval_105340 chr3 85135858 85136508 + 0 NA intron (ENSMUSG00000102805.5, intron 3 of 9) protein_coding-intron (ENSMUSG00000102805.5, intron 3 of 9) 16513 ENSMUSG00000104290.1 ENSMUSG00000104290 ENSMUST00000194445 Gm38041 processed_pseudogene Interval_95901 chr2 118206122 118207407 + 0 NA intron (ENSMUSG00000027344.14, intron 10 of 10) protein_coding-intron (ENSMUSG00000027344.14, intron 10 of 10) 42018 ENSMUSG00000093368.1 ENSMUSG00000093368 ENSMUST00000175627 Gm22800 miRNA Interval_163392 chr9 21230811 21231807 + 0 NA exon (ENSMUSG00000003308.15, exon 5 of 6) protein_coding-exon (ENSMUSG00000003308.15, exon 5 of 6) 5938 ENSMUSG00000097439.6 ENSMUSG00000097439 ENSMUST00000193429 Gm16754 antisense Interval_128533 chr5 113875854 113876230 + 0 NA intron (ENSMUSG00000004530.12, intron 2 of 2) protein_coding-intron (ENSMUSG00000004530.12, intron 2 of 10) 15881 ENSMUSG00000106623.1 ENSMUSG00000106623 ENSMUST00000198299 Gm43335 TEC Interval_127264 chr5 101981178 101981754 + 0 NA promoter-TSS (ENSMUSG00000043940.15) protein_coding-promoter-TSS (ENSMUSG00000043940.15) 92 ENSMUSG00000043940.15 ENSMUSG00000043940 ENSMUST00000172512 Wdfy3 protein_coding Interval_139106 chr6 95207066 95207643 + 0 NA Intergenic Intergenic 33224 ENSMUSG00000107934.1 ENSMUSG00000107934 ENSMUST00000204307 Gm17822 processed_pseudogene Interval_84812 chr19 17003576 17003807 + 0 NA exon (ENSMUSG00000039126.10, exon 3 of 20) protein_coding-exon (ENSMUSG00000039126.10, exon 3 of 20) 53496 ENSMUSG00000098298.1 ENSMUSG00000098298 ENSMUST00000184854 Gm27970 misc_RNA Interval_68741 chr16 85387048 85387676 + 0 NA Intergenic Intergenic 163055 ENSMUSG00000041134.15 ENSMUSG00000041134 ENSMUST00000162621 Cyyr1 protein_coding Interval_11131 chr1 179559788 179560595 + 0 NA intron (ENSMUSG00000038949.8, intron 1 of 3) protein_coding-intron (ENSMUSG00000038949.8, intron 1 of 10) 13682 ENSMUSG00000038949.8 ENSMUSG00000038949 ENSMUST00000143270 Cnst protein_coding Interval_129258 chr5 118482765 118484053 + 0 NA Intergenic Intergenic -3558 ENSMUSG00000082365.2 ENSMUSG00000082365 ENSMUST00000119191 Gm15754 transcribed_processed_pseudogene Interval_30979 chr11 97559722 97560797 + 0 NA intron (ENSMUSG00000038453.17, intron 1 of 18) protein_coding-intron (ENSMUSG00000038453.17, intron 1 of 17) 14967 ENSMUSG00000038453.17 ENSMUSG00000038453 ENSMUST00000145845 Srcin1 protein_coding Interval_120850 chr4 151026802 151027458 + 0 NA intron (ENSMUSG00000028957.12, intron 2 of 8) protein_coding-intron (ENSMUSG00000028957.12, intron 9 of 20) 4367 ENSMUSG00000028957.12 ENSMUSG00000028957 ENSMUST00000128283 Per3 protein_coding Interval_157957 chr8 77292451 77293121 + 0 NA intron (ENSMUSG00000037148.8, intron 19 of 21) protein_coding-intron (ENSMUSG00000037148.8, intron 19 of 22) 9925 ENSMUSG00000110258.1 ENSMUSG00000110258 ENSMUST00000210161 Gm45406 antisense Interval_82289 chr18 70194864 70195653 + 0 NA Intergenic Intergenic 49324 ENSMUSG00000024512.4 ENSMUSG00000024512 ENSMUST00000025390 Dynap protein_coding Interval_167570 chr9 70521658 70522217 + 0 NA promoter-TSS (ENSMUSG00000094366.1) snRNA-promoter-TSS (ENSMUSG00000094366.1) -233 ENSMUSG00000094366.1 ENSMUSG00000094366 ENSMUST00000083236 Gm23730 snRNA Interval_51371 chr14 27066142 27066870 + 0 NA promoter-TSS (ENSMUSG00000040717.6) protein_coding-promoter-TSS (ENSMUSG00000040717.6) -891 ENSMUSG00000040717.6 ENSMUSG00000040717 ENSMUST00000225829 Il17rd protein_coding Interval_12326 chr1 191766995 191768290 + 0 NA intron (ENSMUSG00000026623.16, intron 6 of 7) protein_coding-intron (ENSMUSG00000026623.16, intron 6 of 7) 5192 ENSMUSG00000064845.1 ENSMUSG00000064845 ENSMUST00000082911 Gm26203 snRNA Interval_89644 chr2 23958258 23958696 + 0 NA Intergenic Intergenic 50036 ENSMUSG00000083373.1 ENSMUSG00000083373 ENSMUST00000117708 Gm13392 processed_pseudogene Interval_120566 chr4 149408203 149408730 + 0 NA intron (ENSMUSG00000028960.20, intron 1 of 29) protein_coding-intron (ENSMUSG00000028960.20, intron 1 of 9) 17519 ENSMUSG00000028960.20 ENSMUSG00000028960 ENSMUST00000131986 Ube4b protein_coding Interval_128916 chr5 116054258 116054584 + 0 NA intron (ENSMUSG00000079278.2, intron 1 of 2) protein_coding-intron (ENSMUSG00000079278.2, intron 1 of 2) -22108 ENSMUSG00000090728.1 ENSMUSG00000090728 ENSMUST00000164753 Gm17420 pseudogene Interval_164992 chr9 43742822 43745573 + 0 NA promoter-TSS (ENSMUSG00000032012.9) protein_coding-promoter-TSS (ENSMUSG00000032012.9) -447 ENSMUSG00000032012.9 ENSMUSG00000032012 ENSMUST00000180221 Nectin1 protein_coding Interval_30000 chr11 88624587 88625642 + 0 NA intron (ENSMUSG00000069769.13, intron 5 of 5) protein_coding-intron (ENSMUSG00000069769.13, intron 5 of 13) -34967 ENSMUSG00000069769.13 ENSMUSG00000069769 ENSMUST00000126293 Msi2 protein_coding Interval_89985 chr2 27075596 27075893 + 0 NA Intergenic Intergenic -7876 ENSMUSG00000009214.9 ENSMUSG00000009214 ENSMUST00000163967 Mymk protein_coding Interval_65624 chr16 24331204 24331984 + 0 NA intron (ENSMUSG00000115852.2, intron 3 of 4) transcribed_processed_pseudogene-intron (ENSMUSG00000115852.2, intron 3 of 4) 38638 ENSMUSG00000116785.1 ENSMUSG00000116785 ENSMUST00000231939 Gm41434 processed_pseudogene Interval_6570 chr1 117231931 117232142 + 0 NA Intergenic Intergenic 161496 ENSMUSG00000101154.1 ENSMUSG00000101154 ENSMUST00000189740 Gm17777 processed_pseudogene Interval_31829 chr11 103184842 103185151 + 0 NA promoter-TSS (ENSMUSG00000055805.15) protein_coding-promoter-TSS (ENSMUSG00000055805.15) 7900 ENSMUSG00000092371.1 ENSMUSG00000092371 ENSMUST00000174079 Gm20511 antisense Interval_158197 chr8 79720429 79720624 + 0 NA intron (ENSMUSG00000036977.8, intron 3 of 4) protein_coding-intron (ENSMUSG00000036977.8, intron 3 of 4) 8675 ENSMUSG00000036977.8 ENSMUSG00000036977 ENSMUST00000210485 Anapc10 protein_coding Interval_46842 chr13 72263316 72264014 + 0 NA Intergenic Intergenic -86556 ENSMUSG00000113594.1 ENSMUSG00000113594 ENSMUST00000220890 Gm4052 processed_pseudogene Interval_52888 chr14 51860205 51860473 + 0 NA Intergenic Intergenic 6640 ENSMUSG00000062148.6 ENSMUSG00000062148 ENSMUST00000074477 Ear6 protein_coding Interval_5895 chr1 93014435 93015151 + 0 NA TTS (ENSMUSG00000014602.15) protein_coding-TTS (ENSMUSG00000014602.15) 8459 ENSMUSG00000045091.4 ENSMUSG00000045091 ENSMUST00000059676 Aqp12 protein_coding Interval_95432 chr2 109286567 109286776 + 0 NA intron (ENSMUSG00000027115.14, intron 1 of 2) protein_coding-intron (ENSMUSG00000027115.14, intron 1 of 16) -5352 ENSMUSG00000027115.14 ENSMUSG00000027115 ENSMUST00000162515 Kif18a protein_coding Interval_66204 chr16 32320263 32320472 + 0 NA Intergenic Intergenic 6328 ENSMUSG00000116900.1 ENSMUSG00000116900 ENSMUST00000232196 Gm8387 processed_pseudogene Interval_57926 chr15 25515877 25516133 + 0 NA Intergenic Intergenic -70365 ENSMUSG00000115850.1 ENSMUSG00000115850 ENSMUST00000226289 Gm48956 lincRNA Interval_166384 chr9 58815182 58816659 + 0 NA Intergenic Intergenic -7492 ENSMUSG00000032338.9 ENSMUSG00000032338 ENSMUST00000034889 Hcn4 protein_coding Interval_89761 chr2 25256877 25257207 + 0 NA TTS (ENSMUSG00000078201.5) protein_coding-TTS (ENSMUSG00000078201.5) 1603 ENSMUSG00000078201.5 ENSMUSG00000078201 ENSMUST00000104998 Tmem203 protein_coding Interval_38525 chr12 79864401 79865550 + 0 NA Intergenic Intergenic 60519 ENSMUSG00000112765.1 ENSMUSG00000112765 ENSMUST00000219857 9430078K24Rik lincRNA Interval_102988 chr3 34039065 34039282 + 0 NA promoter-TSS (ENSMUSG00000027680.15) protein_coding-promoter-TSS (ENSMUSG00000027680.15) -7459 ENSMUSG00000027680.15 ENSMUSG00000027680 ENSMUST00000200425 Fxr1 protein_coding Interval_11175 chr1 179856609 179856818 + 0 NA Intergenic Intergenic 53337 ENSMUSG00000073486.2 ENSMUSG00000073486 ENSMUST00000097454 Gm10518 antisense Interval_36804 chr12 54179713 54180148 + 0 NA exon (ENSMUSG00000035105.5, exon 5 of 5) protein_coding-exon (ENSMUSG00000035105.5, exon 5 of 5) 23930 ENSMUSG00000035105.5 ENSMUSG00000035105 ENSMUST00000039516 Egln3 protein_coding Interval_46997 chr13 74116939 74117314 + 0 NA Intergenic Intergenic -4389 ENSMUSG00000036123.8 ENSMUSG00000036123 ENSMUST00000221703 Slc9a3 protein_coding Interval_136383 chr6 54007917 54008829 + 0 NA intron (ENSMUSG00000108060.2, intron 2 of 3) processed_transcript-intron (ENSMUSG00000108060.2, intron 2 of 3) 29644 ENSMUSG00000108060.2 ENSMUSG00000108060 ENSMUST00000203047 4921529L05Rik processed_transcript Interval_33455 chr11 116628670 116629627 + 0 NA Intergenic Intergenic -24386 ENSMUSG00000075410.13 ENSMUSG00000075410 ENSMUST00000156088 Prcd protein_coding Interval_70678 chr17 12980502 12981338 + 0 NA TTS (ENSMUSG00000060475.13) protein_coding-TTS (ENSMUSG00000060475.13) 13249 ENSMUSG00000060475.13 ENSMUSG00000060475 ENSMUST00000233467 Wtap protein_coding Interval_158113 chr8 78820323 78821364 + 0 NA intron (ENSMUSG00000031683.16, intron 1 of 4) protein_coding-intron (ENSMUSG00000031683.16, intron 1 of 3) -7629 ENSMUSG00000031683.16 ENSMUSG00000031683 ENSMUST00000146824 Lsm6 protein_coding Interval_89804 chr2 25557262 25558347 + 0 NA promoter-TSS (ENSMUSG00000015092.9) protein_coding-promoter-TSS (ENSMUSG00000015092.9) -67 ENSMUSG00000015092.9 ENSMUSG00000015092 ENSMUST00000142288 Edf1 protein_coding Interval_25296 chr11 46165952 46166844 + 0 NA exon (ENSMUSG00000020411.2, exon 1 of 6) protein_coding-exon (ENSMUSG00000020411.2, exon 1 of 6) 110 ENSMUSG00000020411.2 ENSMUSG00000020411 ENSMUST00000020679 Nipal4 protein_coding Interval_28951 chr11 79518313 79518586 + 0 NA intron (ENSMUSG00000093938.2, intron 1 of 1) protein_coding-intron (ENSMUSG00000020716.16, intron 36 of 57) 5313 ENSMUSG00000093938.2 ENSMUSG00000093938 ENSMUST00000179322 Evi2b protein_coding Interval_36 GL456211.1 195353 195584 + 0 NA NA NA NA NA Interval_127158 chr5 100691896 100692235 + 0 NA intron (ENSMUSG00000035273.14, intron 8 of 10) protein_coding-intron (ENSMUSG00000035273.14, intron 8 of 11) 21206 ENSMUSG00000085269.1 ENSMUSG00000085269 ENSMUST00000123463 Gm15777 antisense Interval_45040 chr13 51687477 51687816 + 0 NA intron (ENSMUSG00000021451.16, intron 3 of 4) protein_coding-intron (ENSMUSG00000021451.16, intron 3 of 4) 35849 ENSMUSG00000035139.14 ENSMUSG00000035139 ENSMUST00000153877 Secisbp2 protein_coding Interval_53045 chr14 53825556 53826532 + 0 NA Intergenic Intergenic -5061 ENSMUSG00000076861.10 ENSMUSG00000076861 ENSMUST00000186573 Trav18 TR_V_gene Interval_87799 chr19 55931214 55931898 + 0 NA exon (ENSMUSG00000024985.20, exon 12 of 12) protein_coding-exon (ENSMUSG00000024985.20, exon 12 of 12) -80973 ENSMUSG00000117833.1 ENSMUSG00000117833 ENSMUST00000236015 Gm50135 processed_pseudogene Interval_164303 chr9 35166279 35167322 + 0 NA intron (ENSMUSG00000032040.15, intron 2 of 6) protein_coding-intron (ENSMUSG00000032040.15, intron 2 of 5) 9193 ENSMUSG00000032040.15 ENSMUSG00000032040 ENSMUST00000155139 Dcps protein_coding Interval_138310 chr6 87101098 87102223 + 0 NA Intergenic Intergenic -3153 ENSMUSG00000090891.3 ENSMUSG00000090891 ENSMUST00000205257 D6Ertd527e protein_coding Interval_119905 chr4 140810548 140811100 + 0 NA promoter-TSS (ENSMUSG00000025328.9) protein_coding-promoter-TSS (ENSMUSG00000025328.9) -169 ENSMUSG00000085918.1 ENSMUSG00000085918 ENSMUST00000151848 Gm13032 processed_transcript Interval_51452 chr14 27666168 27666448 + 0 NA intron (ENSMUSG00000040640.11, intron 1 of 15) protein_coding-intron (ENSMUSG00000040640.11, intron 2 of 15) -48069 ENSMUSG00000114653.1 ENSMUSG00000114653 ENSMUST00000224481 Gm18398 processed_pseudogene Interval_44649 chr13 46921380 46921954 + 0 NA intron (ENSMUSG00000021375.11, intron 2 of 2) protein_coding-intron (ENSMUSG00000021375.11, intron 2 of 37) 19078 ENSMUSG00000084466.1 ENSMUSG00000084466 ENSMUST00000122517 Gm22960 snRNA Interval_26476 chr11 58064261 58064894 + 0 NA intron (ENSMUSG00000086962.4, intron 8 of 8) protein_coding-intron (ENSMUSG00000086962.4, intron 6 of 6) 28557 ENSMUSG00000086962.4 ENSMUSG00000086962 ENSMUST00000137124 Gm12248 protein_coding Interval_23998 chr11 29297133 29298427 + 0 NA Intergenic Intergenic 36542 ENSMUSG00000083298.1 ENSMUSG00000083298 ENSMUST00000119263 Gm12085 processed_pseudogene Interval_130194 chr5 124850857 124852606 + 0 NA promoter-TSS (ENSMUSG00000037979.13) protein_coding-promoter-TSS (ENSMUSG00000037979.13) -148 ENSMUSG00000037979.13 ENSMUSG00000037979 ENSMUST00000143268 Ccdc92 protein_coding Interval_39870 chr12 99245077 99245300 + 0 NA promoter-TSS (ENSMUSG00000093419.1) processed_pseudogene-promoter-TSS (ENSMUSG00000093419.1) -483 ENSMUSG00000093419.1 ENSMUSG00000093419 ENSMUST00000177490 Gm19898 processed_pseudogene Interval_171919 chr9 122568724 122569979 + 0 NA Intergenic Intergenic -3151 ENSMUSG00000097736.8 ENSMUSG00000097736 ENSMUST00000181719 9530059O14Rik lincRNA Interval_141443 chr6 128308113 128308771 + 0 NA Intergenic Intergenic -4915 ENSMUSG00000053173.12 ENSMUSG00000053173 ENSMUST00000118863 Rpl18-ps2 processed_pseudogene Interval_63208 chr15 99744750 99745031 + 0 NA intron (ENSMUSG00000023021.15, intron 2 of 6) protein_coding-intron (ENSMUSG00000023021.15, intron 4 of 9) 2180 ENSMUSG00000023021.15 ENSMUSG00000023021 ENSMUST00000176627 Cers5 protein_coding Interval_160656 chr8 111353862 111354202 + 0 NA intron (ENSMUSG00000033579.16, intron 4 of 5) protein_coding-intron (ENSMUSG00000033579.16, intron 4 of 6) -16239 ENSMUSG00000012519.14 ENSMUSG00000012519 ENSMUST00000145862 Mlkl protein_coding Interval_37987 chr12 73610911 73611671 + 0 NA intron (ENSMUSG00000021108.18, intron 2 of 14) protein_coding-intron (ENSMUSG00000021108.18, intron 1 of 13) 26495 ENSMUSG00000021108.18 ENSMUSG00000021108 ENSMUST00000220898 Prkch protein_coding Interval_81364 chr18 59237332 59238371 + 0 NA intron (ENSMUSG00000058152.8, intron 2 of 8) protein_coding-intron (ENSMUSG00000058152.8, intron 2 of 2) 62398 ENSMUSG00000058152.8 ENSMUSG00000058152 ENSMUST00000080721 Chsy3 protein_coding Interval_103013 chr3 34445424 34445867 + 0 NA intron (ENSMUSG00000105265.4, intron 2 of 2) processed_transcript-intron (ENSMUSG00000105265.4, intron 2 of 4) -10548 ENSMUSG00000092242.1 ENSMUSG00000092242 ENSMUST00000174440 Gm20515 lincRNA Interval_138163 chr6 85751368 85751786 + 0 NA intron (ENSMUSG00000090256.1, intron 6 of 8) unprocessed_pseudogene-intron (ENSMUSG00000090256.1, intron 6 of 8) -7968 ENSMUSG00000098691.1 ENSMUSG00000098691 ENSMUST00000183533 Gm27317 miRNA Interval_9509 chr1 158245661 158245983 + 0 NA exon (ENSMUSG00000004031.13, exon 8 of 8) protein_coding-exon (ENSMUSG00000004031.13, exon 8 of 8) 110407 ENSMUSG00000004031.13 ENSMUSG00000004031 ENSMUST00000192709 Brinp2 protein_coding Interval_71748 chr17 25843913 25845182 + 0 NA promoter-TSS (ENSMUSG00000025733.17) protein_coding-promoter-TSS (ENSMUSG00000025733.17) -84 ENSMUSG00000025733.17 ENSMUSG00000025733 ENSMUST00000176247 Rhot2 protein_coding Interval_146162 chr7 44443600 44443977 + 0 NA intron (ENSMUSG00000047085.14, intron 1 of 2) protein_coding-intron (ENSMUSG00000047085.14, intron 1 of 2) 1051 ENSMUSG00000047085.14 ENSMUSG00000047085 ENSMUST00000156093 Lrrc4b protein_coding Interval_22830 chr11 16437512 16437711 + 0 NA Intergenic Intergenic -1643 ENSMUSG00000083925.1 ENSMUSG00000083925 ENSMUST00000118857 Gm12012 processed_pseudogene Interval_99355 chr2 160058870 160059499 + 0 NA Intergenic Intergenic 42531 ENSMUSG00000086653.1 ENSMUSG00000086653 ENSMUST00000140319 9130015L21Rik lincRNA Interval_26049 chr11 53758860 53760334 + 0 NA Intergenic Intergenic 4057 ENSMUSG00000099153.1 ENSMUSG00000099153 ENSMUST00000184599 Mir7671 miRNA Interval_142919 chr6 146965119 146966839 + 0 NA intron (ENSMUSG00000016487.15, intron 3 of 4) protein_coding-intron (ENSMUSG00000016487.15, intron 2 of 26) -10504 ENSMUSG00000016487.15 ENSMUSG00000016487 ENSMUST00000136837 Ppfibp1 protein_coding Interval_83130 chr18 81857362 81858546 + 0 NA Intergenic Intergenic -7938 ENSMUSG00000117892.1 ENSMUSG00000117892 ENSMUST00000237663 Gm30454 lincRNA Interval_172092 chrX 7375005 7376866 + 0 NA promoter-TSS (ENSMUSG00000046269.17) protein_coding-promoter-TSS (ENSMUSG00000046269.17) 10 ENSMUSG00000087252.1 ENSMUSG00000087252 ENSMUST00000128858 Gm14379 processed_transcript Interval_151728 chr7 126284802 126286223 + 0 NA intron (ENSMUSG00000042978.11, intron 1 of 1) protein_coding-intron (ENSMUSG00000042978.11, intron 1 of 3) 14404 ENSMUSG00000066180.5 ENSMUSG00000066180 ENSMUST00000084598 Gm10155 processed_pseudogene Interval_166507 chr9 60237506 60237913 + 0 NA intron (ENSMUSG00000032289.15, intron 6 of 16) protein_coding-intron (ENSMUSG00000032289.15, intron 7 of 17) -96433 ENSMUSG00000111296.1 ENSMUSG00000111296 ENSMUST00000214235 2010001M07Rik antisense Interval_160753 chr8 111955168 111955611 + 0 NA Intergenic Intergenic 14321 ENSMUSG00000031950.7 ENSMUSG00000031950 ENSMUST00000133628 Gabarapl2 protein_coding Interval_66509 chr16 34646855 34647140 + 0 NA Intergenic Intergenic -19320 ENSMUSG00000022832.11 ENSMUSG00000022832 ENSMUST00000231612 Ropn1 protein_coding Interval_87159 chr19 46515155 46515390 + 0 NA TTS (ENSMUSG00000025034.9) protein_coding-TTS (ENSMUSG00000025034.9) 612 ENSMUSG00000025034.9 ENSMUSG00000025034 ENSMUST00000235934 Trim8 protein_coding Interval_147442 chr7 67234732 67235034 + 0 NA exon (ENSMUSG00000030557.17, exon 11 of 11) protein_coding-exon (ENSMUSG00000030557.17, exon 11 of 11) 12267 ENSMUSG00000043831.12 ENSMUSG00000043831 ENSMUST00000208569 Lysmd4 protein_coding Interval_147920 chr7 75555869 75557052 + 0 NA intron (ENSMUSG00000066406.16, intron 2 of 5) protein_coding-intron (ENSMUSG00000066406.16, intron 2 of 36) -4154 ENSMUSG00000108557.1 ENSMUSG00000108557 ENSMUST00000205544 Gm44835 TEC Interval_75724 chr17 70872008 70874120 + 0 NA intron (ENSMUSG00000100865.2, intron 3 of 3) transcribed_processed_pseudogene-intron (ENSMUSG00000100865.2, intron 3 of 3) -2776 ENSMUSG00000100865.2 ENSMUSG00000100865 ENSMUST00000184151 Gm9320 transcribed_processed_pseudogene Interval_154860 chr8 24442800 24443977 + 0 NA Intergenic Intergenic -3709 ENSMUSG00000108820.1 ENSMUSG00000108820 ENSMUST00000209183 Gm44620 TEC Interval_20095 chr10 114387526 114388176 + 0 NA Intergenic Intergenic 37377 ENSMUSG00000104335.1 ENSMUSG00000104335 ENSMUST00000192301 Gm38281 TEC Interval_45172 chr13 52921126 52922006 + 0 NA intron (ENSMUSG00000021460.17, intron 1 of 5) protein_coding-intron (ENSMUSG00000021460.17, intron 1 of 9) -8620 ENSMUSG00000021460.17 ENSMUSG00000021460 ENSMUST00000151469 Auh protein_coding Interval_54472 chr14 70067556 70068589 + 0 NA Intergenic Intergenic -9242 ENSMUSG00000033730.4 ENSMUSG00000033730 ENSMUST00000223747 Egr3 protein_coding Interval_66714 chr16 36551066 36551502 + 0 NA intron (ENSMUSG00000051980.13, intron 2 of 2) protein_coding-intron (ENSMUSG00000051980.13, intron 1 of 6) 10857 ENSMUSG00000051980.13 ENSMUSG00000051980 ENSMUST00000174750 Casr protein_coding Interval_102734 chr3 30674325 30675400 + 0 NA Intergenic Intergenic -11223 ENSMUSG00000086189.1 ENSMUSG00000086189 ENSMUST00000133653 Gm15462 antisense Interval_135938 chr6 48925493 48925694 + 0 NA Intergenic Intergenic -4302 ENSMUSG00000029813.8 ENSMUSG00000029813 ENSMUST00000031837 Doxl1 protein_coding Interval_113809 chr4 58965451 58966051 + 0 NA exon (ENSMUSG00000028378.6, exon 10 of 10) protein_coding-exon (ENSMUSG00000028378.6, exon 10 of 10) 21368 ENSMUSG00000028378.6 ENSMUSG00000028378 ENSMUST00000030069 Ptgr1 protein_coding Interval_160471 chr8 109778152 109779442 + 0 NA promoter-TSS (ENSMUSG00000031731.16) protein_coding-promoter-TSS (ENSMUSG00000031731.16) -46684 ENSMUSG00000069895.4 ENSMUSG00000069895 ENSMUST00000212726 Atxn1l protein_coding Interval_9568 chr1 159478909 159479154 + 0 NA Intergenic Intergenic -44810 ENSMUSG00000015829.13 ENSMUSG00000015829 ENSMUST00000192457 Tnr protein_coding Interval_40901 chr12 109706853 109707683 + 0 NA intron (ENSMUSG00000098202.2, intron 2 of 2) lincRNA-intron (ENSMUSG00000098202.2, intron 16 of 16) -1792 ENSMUSG00000065498.4 ENSMUSG00000065498 ENSMUST00000083564 Mir379 miRNA Interval_21213 chr10 127252013 127252793 + 0 NA intron (ENSMUSG00000074657.5, intron 1 of 4) protein_coding-intron (ENSMUSG00000074657.5, intron 1 of 28) 10692 ENSMUSG00000074657.5 ENSMUSG00000074657 ENSMUST00000218298 Kif5a protein_coding Interval_116544 chr4 115279900 115280101 + 0 NA Intergenic Intergenic -19046 ENSMUSG00000066071.6 ENSMUSG00000066071 ENSMUST00000084343 Cyp4a12a protein_coding Interval_68375 chr16 74887452 74888429 + 0 NA Intergenic Intergenic -12002 ENSMUSG00000116881.1 ENSMUSG00000116881 ENSMUST00000232678 Gm49674 TEC Interval_130659 chr5 129541955 129542901 + 0 NA intron (ENSMUSG00000029439.14, intron 10 of 17) protein_coding-intron (ENSMUSG00000029439.14, intron 10 of 17) -13719 ENSMUSG00000104814.1 ENSMUSG00000104814 ENSMUST00000196287 Gm42979 TEC Interval_80758 chr18 46871852 46872234 + 0 NA intron (ENSMUSG00000024481.5, intron 3 of 8) protein_coding-intron (ENSMUSG00000024481.5, intron 3 of 19) 22004 ENSMUSG00000024481.5 ENSMUSG00000024481 ENSMUST00000234519 Lvrn protein_coding Interval_147781 chr7 73529572 73529936 + 0 NA intron (ENSMUSG00000078671.11, intron 1 of 4) protein_coding-intron (ENSMUSG00000078671.11, intron 2 of 8) -1029 ENSMUSG00000108812.1 ENSMUSG00000108812 ENSMUST00000205707 C130083A15Rik TEC Interval_86454 chr19 40659892 40660871 + 0 NA promoter-TSS (ENSMUSG00000048120.16) protein_coding-promoter-TSS (ENSMUSG00000048120.16) 16235 ENSMUSG00000117952.1 ENSMUSG00000117952 ENSMUST00000235613 Gm50132 sense_intronic Interval_83658 chr19 3532493 3534045 + 0 NA intron (ENSMUSG00000024908.15, intron 2 of 3) protein_coding-intron (ENSMUSG00000024908.15, intron 2 of 22) 6165 ENSMUSG00000114302.1 ENSMUSG00000114302 ENSMUST00000223977 Gm48683 antisense Interval_155166 chr8 27166549 27167651 + 0 NA intron (ENSMUSG00000031488.14, intron 1 of 1) protein_coding-intron (ENSMUSG00000031488.14, intron 1 of 4) 3912 ENSMUSG00000109719.1 ENSMUSG00000109719 ENSMUST00000210111 Gm45266 TEC Interval_54503 chr14 70303363 70303974 + 0 NA TTS (ENSMUSG00000115025.1) processed_pseudogene-TTS (ENSMUSG00000115025.1) 1461 ENSMUSG00000115025.1 ENSMUSG00000115025 ENSMUST00000226708 Gm4240 processed_pseudogene Interval_112152 chr4 34963348 34963571 + 0 NA intron (ENSMUSG00000086792.1, intron 1 of 1) protein_coding-intron (ENSMUSG00000073910.10, intron 3 of 3) 1239 ENSMUSG00000086792.1 ENSMUSG00000086792 ENSMUST00000144419 Gm12364 antisense Interval_48220 chr13 97252592 97254002 + 0 NA TTS (ENSMUSG00000041773.8) protein_coding-TTS (ENSMUSG00000041773.8) 12192 ENSMUSG00000041773.8 ENSMUSG00000041773 ENSMUST00000041623 Enc1 protein_coding Interval_161916 chr8 123739158 123739697 + 0 NA exon (ENSMUSG00000110599.1, exon 4 of 4) lincRNA-exon (ENSMUSG00000110599.1, exon 4 of 4) -4285 ENSMUSG00000110467.1 ENSMUSG00000110467 ENSMUST00000212860 Gm45781 lincRNA Interval_146873 chr7 54215785 54216288 + 0 NA Intergenic Intergenic -2651 ENSMUSG00000092856.2 ENSMUSG00000092856 ENSMUST00000175115 Gm25956 miRNA Interval_134695 chr6 30456740 30457589 + 0 NA Intergenic Intergenic -2964 ENSMUSG00000085470.1 ENSMUSG00000085470 ENSMUST00000132023 1700012C14Rik lincRNA Interval_90566 chr2 31191181 31191858 + 0 NA intron (ENSMUSG00000000194.13, intron 13 of 13) protein_coding-intron (ENSMUSG00000000194.13, intron 13 of 17) 1828 ENSMUSG00000088891.1 ENSMUSG00000088891 ENSMUST00000158266 Gm22516 snoRNA Interval_37158 chr12 59066313 59067533 + 0 NA promoter-TSS (ENSMUSG00000020994.5) protein_coding-promoter-TSS (ENSMUSG00000020994.5) -20 ENSMUSG00000020994.5 ENSMUSG00000020994 ENSMUST00000217676 Pnn protein_coding Interval_622 chr1 9056251 9056473 + 0 NA intron (ENSMUSG00000025909.16, intron 2 of 20) protein_coding-intron (ENSMUSG00000025909.16, intron 3 of 4) -92741 ENSMUSG00000066693.2 ENSMUSG00000066693 ENSMUST00000085919 Gm7493 processed_pseudogene Interval_78828 chr18 20847760 20848158 + 0 NA intron (ENSMUSG00000033382.15, intron 14 of 28) protein_coding-intron (ENSMUSG00000033382.15, intron 14 of 15) -3367 ENSMUSG00000088549.1 ENSMUSG00000088549 ENSMUST00000157924 Gm24959 snRNA Interval_44389 chr13 44564524 44565510 + 0 NA intron (ENSMUSG00000113977.1, intron 1 of 3) lincRNA-intron (ENSMUSG00000113977.1, intron 1 of 3) 3651 ENSMUSG00000113977.1 ENSMUSG00000113977 ENSMUST00000222558 Gm34276 lincRNA Interval_165180 chr9 45040718 45043254 + 0 NA promoter-TSS (ENSMUSG00000032092.5) protein_coding-promoter-TSS (ENSMUSG00000032092.5) 2187 ENSMUSG00000032092.5 ENSMUSG00000032092 ENSMUST00000216777 Mpzl2 protein_coding Interval_44013 chr13 39523499 39524743 + 0 NA Intergenic Intergenic 8982 ENSMUSG00000114221.1 ENSMUSG00000114221 ENSMUST00000224895 Gm47351 lincRNA Interval_98569 chr2 153299167 153299427 + 0 NA intron (ENSMUSG00000027475.9, intron 1 of 8) protein_coding-intron (ENSMUSG00000027475.9, intron 1 of 8) 7884 ENSMUSG00000027475.9 ENSMUSG00000027475 ENSMUST00000028977 Kif3b protein_coding Interval_15602 chr10 52257792 52259106 + 0 NA intron (ENSMUSG00000019891.15, intron 1 of 9) protein_coding-intron (ENSMUSG00000019891.15, intron 1 of 10) 24812 ENSMUSG00000019891.15 ENSMUSG00000019891 ENSMUST00000218582 Dcbld1 protein_coding Interval_100719 chr2 172005116 172005333 + 0 NA Intergenic Intergenic -1229 ENSMUSG00000087100.1 ENSMUSG00000087100 ENSMUST00000136486 Gm14641 lincRNA Interval_79386 chr18 31517161 31517662 + 0 NA Intergenic Intergenic 3351 ENSMUSG00000117576.1 ENSMUSG00000117576 ENSMUST00000234311 Gm5241 processed_pseudogene Interval_74889 chr17 57080796 57081043 + 0 NA exon (ENSMUSG00000062591.5, exon 4 of 4) protein_coding-exon (ENSMUSG00000062591.5, exon 4 of 4) 6863 ENSMUSG00000062591.5 ENSMUSG00000062591 ENSMUST00000071135 Tubb4a protein_coding Interval_143296 chr7 5006386 5006580 + 0 NA TTS (ENSMUSG00000061374.14) protein_coding-TTS (ENSMUSG00000061374.14) 7161 ENSMUSG00000061374.14 ENSMUSG00000061374 ENSMUST00000207412 Fiz1 protein_coding Interval_11773 chr1 185335498 185336787 + 0 NA intron (ENSMUSG00000026617.16, intron 1 of 3) protein_coding-intron (ENSMUSG00000026617.16, intron 1 of 8) 3970 ENSMUSG00000026617.16 ENSMUSG00000026617 ENSMUST00000137757 Bpnt1 protein_coding Interval_86335 chr19 38836151 38837655 + 0 NA exon (ENSMUSG00000048720.8, exon 1 of 13) protein_coding-exon (ENSMUSG00000048720.8, exon 1 of 13) 226 ENSMUSG00000048720.8 ENSMUSG00000048720 ENSMUST00000235558 Tbc1d12 protein_coding Interval_118761 chr4 133583187 133585033 + 0 NA promoter-TSS (ENSMUSG00000028848.13) protein_coding-promoter-TSS (ENSMUSG00000028848.13) -318 ENSMUSG00000028848.13 ENSMUSG00000028848 ENSMUST00000148909 Gpn2 protein_coding Interval_10581 chr1 172009515 172010376 + 0 NA promoter-TSS (ENSMUSG00000026556.15) protein_coding-promoter-TSS (ENSMUSG00000026556.15) 16766 ENSMUSG00000026556.15 ENSMUSG00000026556 ENSMUST00000138714 Vangl2 protein_coding Interval_116622 chr4 116137697 116137919 + 0 NA promoter-TSS (ENSMUSG00000028700.14) protein_coding-promoter-TSS (ENSMUSG00000028700.14) 13530 ENSMUSG00000028701.4 ENSMUSG00000028701 ENSMUST00000135982 Lurap1 protein_coding Interval_173942 chrX 114451091 114451432 + 0 NA Intergenic Intergenic -23343 ENSMUSG00000025597.13 ENSMUSG00000025597 ENSMUST00000133447 Klhl4 protein_coding Interval_9555 chr1 159378560 159379357 + 0 NA TTS (ENSMUSG00000103289.1) processed_pseudogene-TTS (ENSMUSG00000103289.1) 554 ENSMUSG00000103289.1 ENSMUSG00000103289 ENSMUST00000194705 Gm31256 processed_pseudogene Interval_90876 chr2 33154609 33155242 + 0 NA intron (ENSMUSG00000038831.16, intron 12 of 17) protein_coding-intron (ENSMUSG00000038831.16, intron 11 of 16) 3245 ENSMUSG00000038831.16 ENSMUSG00000038831 ENSMUST00000113164 Ralgps1 protein_coding Interval_97043 chr2 130743732 130744090 + 0 NA intron (ENSMUSG00000027309.18, intron 5 of 7) protein_coding-intron (ENSMUSG00000027309.18, intron 21 of 36) -4411 ENSMUSG00000027309.18 ENSMUSG00000027309 ENSMUST00000146975 4930402H24Rik protein_coding Interval_9285 chr1 155827845 155828638 + 0 NA intron (ENSMUSG00000102558.1, intron 1 of 1) antisense-intron (ENSMUSG00000102558.1, intron 1 of 1) 9747 ENSMUSG00000102558.1 ENSMUSG00000102558 ENSMUST00000195048 Gm37571 antisense Interval_136550 chr6 55465573 55466846 + 0 NA intron (ENSMUSG00000029778.12, intron 2 of 12) protein_coding-intron (ENSMUSG00000029778.12, intron 3 of 16) 5973 ENSMUSG00000029778.12 ENSMUSG00000029778 ENSMUST00000165786 Adcyap1r1 protein_coding Interval_122415 chr5 22360500 22361702 + 0 NA Intergenic Intergenic -1824 ENSMUSG00000088578.1 ENSMUSG00000088578 ENSMUST00000157953 Gm25459 snoRNA Interval_80380 chr18 40595622 40596102 + 0 NA Intergenic Intergenic 56076 ENSMUSG00000118202.1 ENSMUSG00000118202 ENSMUST00000237191 C030017B01Rik lincRNA Interval_33947 chr11 119602560 119603835 + 0 NA promoter-TSS (ENSMUSG00000025583.15) protein_coding-promoter-TSS (ENSMUSG00000025583.15) 43433 ENSMUSG00000083870.1 ENSMUSG00000083870 ENSMUST00000121392 Gm11761 processed_pseudogene Interval_136902 chr6 63798033 63798510 + 0 NA intron (ENSMUSG00000071424.10, intron 2 of 8) protein_coding-intron (ENSMUSG00000071424.10, intron 2 of 15) -14204 ENSMUSG00000108068.1 ENSMUSG00000108068 ENSMUST00000204208 Gm44075 processed_pseudogene Interval_87972 chr19 57472470 57472781 + 0 NA intron (ENSMUSG00000025086.13, intron 2 of 3) protein_coding-intron (ENSMUSG00000025086.13, intron 3 of 6) 19668 ENSMUSG00000025086.13 ENSMUSG00000025086 ENSMUST00000238107 Trub1 protein_coding Interval_119835 chr4 140358070 140358540 + 0 NA Intergenic Intergenic -22325 ENSMUSG00000087084.1 ENSMUSG00000087084 ENSMUST00000126252 Gm13016 lincRNA Interval_4246 chr1 72155622 72157130 + 0 NA Intergenic Intergenic -34375 ENSMUSG00000102123.1 ENSMUSG00000102123 ENSMUST00000191139 Gm4319 lincRNA Interval_42281 chr13 11736995 11737277 + 0 NA intron (ENSMUSG00000021313.16, intron 37 of 104) protein_coding-intron (ENSMUSG00000021313.16, intron 37 of 104) 84598 ENSMUSG00000113269.1 ENSMUSG00000113269 ENSMUST00000221204 Gm47494 TEC Interval_15822 chr10 57576603 57578390 + 0 NA Intergenic Intergenic -23897 ENSMUSG00000093406.1 ENSMUSG00000093406 ENSMUST00000177147 Rpl48-ps1 processed_pseudogene Interval_63296 chr15 100157177 100157457 + 0 NA exon (ENSMUSG00000023026.16, exon 3 of 33) protein_coding-exon (ENSMUSG00000023026.16, exon 3 of 33) -5410 ENSMUSG00000023026.16 ENSMUSG00000023026 ENSMUST00000135658 Dip2b protein_coding Interval_41577 chr12 116473368 116473623 + 0 NA Intergenic Intergenic 3504 ENSMUSG00000084629.1 ENSMUSG00000084629 ENSMUST00000122680 Gm25112 snRNA Interval_20176 chr10 115421730 115422950 + 0 NA intron (ENSMUSG00000034163.10, intron 24 of 34) protein_coding-intron (ENSMUSG00000034163.10, intron 24 of 34) -6167 ENSMUSG00000034163.10 ENSMUSG00000034163 ENSMUST00000141246 Zfc3h1 protein_coding Interval_112366 chr4 40853211 40854850 + 0 NA promoter-TSS (ENSMUSG00000028413.13) protein_coding-promoter-TSS (ENSMUSG00000028413.13) -25 ENSMUSG00000028413.13 ENSMUSG00000028413 ENSMUST00000108096 B4galt1 protein_coding Interval_360 chr1 4543504 4544787 + 0 NA Intergenic Intergenic -8859 ENSMUSG00000103003.1 ENSMUSG00000103003 ENSMUST00000193889 Gm38076 processed_pseudogene Interval_97679 chr2 142673363 142673584 + 0 NA intron (ENSMUSG00000038844.10, intron 24 of 26) protein_coding-intron (ENSMUSG00000038844.10, intron 23 of 25) 96545 ENSMUSG00000083215.3 ENSMUSG00000083215 ENSMUST00000119377 Rbmx2-ps processed_pseudogene Interval_76715 chr17 83657609 83658123 + 0 NA Intergenic Intergenic -25971 ENSMUSG00000045053.2 ENSMUSG00000045053 ENSMUST00000051482 Kcng3 protein_coding Interval_61694 chr15 83444198 83446175 + 0 NA intron (ENSMUSG00000016664.16, intron 1 of 11) protein_coding-intron (ENSMUSG00000016664.16, intron 1 of 11) -39123 ENSMUSG00000049414.7 ENSMUSG00000049414 ENSMUST00000079706 Gm5417 processed_pseudogene Interval_89723 chr2 25000748 25001279 + 0 NA intron (ENSMUSG00000036833.16, intron 3 of 5) protein_coding-intron (ENSMUSG00000036833.16, intron 12 of 34) 5245 ENSMUSG00000065798.1 ENSMUSG00000065798 ENSMUST00000083864 Gm25518 snRNA Interval_39601 chr12 91400112 91401211 + 0 NA promoter-TSS (ENSMUSG00000020963.15) protein_coding-promoter-TSS (ENSMUSG00000020963.15) 16098 ENSMUSG00000020963.15 ENSMUSG00000020963 ENSMUST00000186437 Tshr protein_coding Interval_10763 chr1 174430457 174431154 + 0 NA exon (ENSMUSG00000051509.6, exon 1 of 1) protein_coding-exon (ENSMUSG00000051509.6, exon 1 of 1) 6741 ENSMUSG00000051509.6 ENSMUSG00000051509 ENSMUST00000053178 Olfr414 protein_coding Interval_27244 chr11 64718591 64719171 + 0 NA Intergenic Intergenic 41146 ENSMUSG00000081756.1 ENSMUSG00000081756 ENSMUST00000121627 Gm12291 processed_pseudogene Interval_168895 chr9 88444461 88444988 + 0 NA intron (ENSMUSG00000092541.7, intron 2 of 8) protein_coding-intron (ENSMUSG00000092541.7, intron 2 of 3) -1072 ENSMUSG00000101335.1 ENSMUSG00000101335 ENSMUST00000188747 Gm28229 sense_intronic Interval_119419 chr4 137555215 137555452 + 0 NA intron (ENSMUSG00000028763.18, intron 75 of 96) protein_coding-intron (ENSMUSG00000028763.18, intron 75 of 96) 17047 ENSMUSG00000099134.1 ENSMUSG00000099134 ENSMUST00000184284 Mir7018 miRNA Interval_60287 chr15 72326931 72328335 + 0 NA Intergenic Intergenic -72177 ENSMUSG00000095129.1 ENSMUSG00000095129 ENSMUST00000178482 Gm23217 snRNA Interval_167137 chr9 65592881 65594466 + 0 NA intron (ENSMUSG00000041064.14, intron 10 of 11) protein_coding-intron (ENSMUSG00000041064.14, intron 10 of 11) 6468 ENSMUSG00000041064.14 ENSMUSG00000041064 ENSMUST00000141046 Pif1 protein_coding Interval_167942 chr9 74842398 74843107 + 0 NA Intergenic Intergenic -5711 ENSMUSG00000093662.2 ENSMUSG00000093662 ENSMUST00000160950 Gm20649 lincRNA Interval_32688 chr11 109670175 109672708 + 0 NA intron (ENSMUSG00000020614.13, intron 11 of 11) protein_coding-intron (ENSMUSG00000020614.13, intron 11 of 11) 5497 ENSMUSG00000020612.16 ENSMUSG00000020612 ENSMUST00000155532 Prkar1a protein_coding Interval_56660 chr14 121234579 121235753 + 0 NA TTS (ENSMUSG00000025555.14) protein_coding-TTS (ENSMUSG00000025555.14) -13540 ENSMUSG00000085133.2 ENSMUSG00000085133 ENSMUST00000130256 B930095G15Rik sense_intronic Interval_159601 chr8 95746534 95746786 + 0 NA promoter-TSS (ENSMUSG00000065089.1) snoRNA-promoter-TSS (ENSMUSG00000065089.1) -465 ENSMUSG00000065089.1 ENSMUSG00000065089 ENSMUST00000083155 Gm26493 snoRNA Interval_66395 chr16 33594133 33595314 + 0 NA intron (ENSMUSG00000035506.16, intron 5 of 10) protein_coding-intron (ENSMUSG00000035506.16, intron 5 of 12) -21667 ENSMUSG00000035506.16 ENSMUSG00000035506 ENSMUST00000149291 Slc12a8 protein_coding Interval_27651 chr11 69297132 69298917 + 0 NA Intergenic Intergenic 3873 ENSMUSG00000087003.1 ENSMUSG00000087003 ENSMUST00000132834 Cntrobos antisense Interval_79750 chr18 34890508 34890790 + 0 NA Intergenic Intergenic 29442 ENSMUSG00000038418.7 ENSMUSG00000038418 ENSMUST00000165033 Egr1 protein_coding Interval_31511 chr11 101108857 101109089 + 0 NA intron (ENSMUSG00000017802.14, intron 1 of 7) protein_coding-intron (ENSMUSG00000017802.14, intron 1 of 8) 10920 ENSMUSG00000017802.14 ENSMUSG00000017802 ENSMUST00000147201 Retreg3 protein_coding Interval_10586 chr1 172026480 172027821 + 0 NA promoter-TSS (ENSMUSG00000026556.15) protein_coding-promoter-TSS (ENSMUSG00000026556.15) -439 ENSMUSG00000026556.15 ENSMUSG00000026556 ENSMUST00000138714 Vangl2 protein_coding Interval_99535 chr2 163016696 163017729 + 0 NA promoter-TSS (ENSMUSG00000017858.12) protein_coding-promoter-TSS (ENSMUSG00000017858.12) -5231 ENSMUSG00000017858.12 ENSMUSG00000017858 ENSMUST00000152201 Ift52 protein_coding Interval_22797 chr11 15777982 15778658 + 0 NA Intergenic Intergenic -259473 ENSMUSG00000104323.1 ENSMUSG00000104323 ENSMUST00000193500 Gm37319 TEC Interval_29694 chr11 86142069 86142276 + 0 NA intron (ENSMUSG00000034329.16, intron 11 of 19) protein_coding-intron (ENSMUSG00000034329.16, intron 11 of 19) -43157 ENSMUSG00000080823.1 ENSMUSG00000080823 ENSMUST00000121382 Atp5l-ps2 processed_pseudogene Interval_67241 chr16 44691486 44692035 + 0 NA Intergenic Intergenic -32597 ENSMUSG00000036208.13 ENSMUSG00000036208 ENSMUST00000132610 Nepro protein_coding Interval_73626 chr17 41542105 41542384 + 0 NA Intergenic Intergenic 121444 ENSMUSG00000117001.1 ENSMUSG00000117001 ENSMUST00000232972 Gm49858 processed_pseudogene Interval_81893 chr18 65652610 65653165 + 0 NA intron (ENSMUSG00000042439.13, intron 3 of 6) protein_coding-intron (ENSMUSG00000042439.13, intron 3 of 5) 18094 ENSMUSG00000117775.1 ENSMUSG00000117775 ENSMUST00000237947 Gm50462 sense_intronic Interval_26599 chr11 59127781 59128282 + 0 NA intron (ENSMUSG00000061462.18, intron 9 of 114) protein_coding-intron (ENSMUSG00000061462.18, intron 9 of 89) 8344 ENSMUSG00000061462.18 ENSMUSG00000061462 ENSMUST00000133040 Obscn protein_coding Interval_128909 chr5 116012063 116012279 + 0 NA intron (ENSMUSG00000085376.1, intron 1 of 1) antisense-intron (ENSMUSG00000085376.1, intron 1 of 1) 2855 ENSMUSG00000085376.1 ENSMUSG00000085376 ENSMUST00000127049 Gm14508 antisense Interval_168920 chr9 88858213 88859690 + 0 NA promoter-TSS (ENSMUSG00000097177.8) processed_transcript-promoter-TSS (ENSMUSG00000097177.8) -60 ENSMUSG00000097677.1 ENSMUSG00000097677 ENSMUST00000181449 Gm26611 lincRNA Interval_52365 chr14 45427010 45427237 + 0 NA Intergenic Intergenic 17866 ENSMUSG00000115209.1 ENSMUSG00000115209 ENSMUST00000228291 Gm34250 lincRNA Interval_103190 chr3 36505650 36506157 + 0 NA intron (ENSMUSG00000085320.1, intron 1 of 3) lincRNA-intron (ENSMUSG00000085320.1, intron 1 of 3) 906 ENSMUSG00000085320.1 ENSMUSG00000085320 ENSMUST00000140203 Gm11548 lincRNA Interval_59060 chr15 42861902 42862280 + 0 NA Intergenic Intergenic -185342 ENSMUSG00000022309.9 ENSMUSG00000022309 ENSMUST00000227738 Angpt1 protein_coding Interval_171225 chr9 115355987 115357436 + 0 NA Intergenic Intergenic -25108 ENSMUSG00000080409.1 ENSMUSG00000080409 ENSMUST00000116759 Mir467h miRNA Interval_110028 chr3 152616647 152616836 + 0 NA intron (ENSMUSG00000039058.11, intron 5 of 13) protein_coding-intron (ENSMUSG00000039058.11, intron 5 of 13) -50172 ENSMUSG00000097745.1 ENSMUSG00000097745 ENSMUST00000181093 AI115009 antisense Interval_159533 chr8 95295201 95295444 + 0 NA intron (ENSMUSG00000031789.17, intron 7 of 9) protein_coding-intron (ENSMUSG00000031789.17, intron 10 of 12) 5344 ENSMUSG00000031789.17 ENSMUSG00000031789 ENSMUST00000212237 Cngb1 protein_coding Interval_166501 chr9 60152823 60153610 + 0 NA intron (ENSMUSG00000032289.15, intron 6 of 16) protein_coding-intron (ENSMUSG00000032289.15, intron 7 of 17) -111037 ENSMUSG00000088090.1 ENSMUSG00000088090 ENSMUST00000157465 Gm23668 rRNA Interval_100417 chr2 168910829 168911133 + 0 NA intron (ENSMUSG00000027551.15, intron 5 of 8) protein_coding-intron (ENSMUSG00000027551.15, intron 5 of 8) -28813 ENSMUSG00000077761.1 ENSMUSG00000077761 ENSMUST00000104573 Gm25214 snoRNA Interval_154235 chr8 13643390 13644881 + 0 NA intron (ENSMUSG00000031453.16, intron 1 of 4) protein_coding-intron (ENSMUSG00000031453.16, intron 1 of 23) 33316 ENSMUSG00000031453.16 ENSMUSG00000031453 ENSMUST00000132439 Rasa3 protein_coding Interval_63824 chr16 3779795 3780034 + 0 NA intron (ENSMUSG00000115961.1, intron 2 of 2) lincRNA-intron (ENSMUSG00000115961.1, intron 2 of 2) 5134 ENSMUSG00000118410.1 ENSMUSG00000118410 ENSMUST00000238641 AC139347.1 unitary_pseudogene Interval_81041 chr18 53246782 53247074 + 0 NA intron (ENSMUSG00000024535.16, intron 1 of 3) protein_coding-intron (ENSMUSG00000024535.16, intron 1 of 7) 1200 ENSMUSG00000024535.16 ENSMUSG00000024535 ENSMUST00000025417 Snx24 protein_coding Interval_128780 chr5 115214246 115216066 + 0 NA Intergenic Intergenic 16813 ENSMUSG00000083182.1 ENSMUSG00000083182 ENSMUST00000122278 Gm13828 processed_pseudogene Interval_115354 chr4 97910630 97911937 + 0 NA intron (ENSMUSG00000028565.18, intron 1 of 5) protein_coding-intron (ENSMUSG00000028565.18, intron 2 of 9) 138549 ENSMUSG00000028565.18 ENSMUSG00000028565 ENSMUST00000133011 Nfia protein_coding Interval_144718 chr7 27755976 27756831 + 0 NA Intergenic Intergenic -14102 ENSMUSG00000109143.1 ENSMUSG00000109143 ENSMUST00000208942 Gm10046 transcribed_unprocessed_pseudogene Interval_34018 chr11 120053799 120054128 + 0 NA Intergenic Intergenic -5138 ENSMUSG00000113114.1 ENSMUSG00000113114 ENSMUST00000223151 Gm47846 unitary_pseudogene Interval_83774 chr19 4603937 4604998 + 0 NA exon (ENSMUSG00000024892.17, exon 9 of 21) protein_coding-exon (ENSMUSG00000024892.17, exon 9 of 21) 10059 ENSMUSG00000024892.17 ENSMUSG00000024892 ENSMUST00000238089 Pcx protein_coding Interval_62557 chr15 94620771 94621959 + 0 NA Intergenic Intergenic -7867 ENSMUSG00000063296.5 ENSMUSG00000063296 ENSMUST00000080141 Tmem117 protein_coding Interval_120369 chr4 148159569 148160903 + 0 NA promoter-TSS (ENSMUSG00000041556.8) protein_coding-promoter-TSS (ENSMUSG00000041556.8) 246 ENSMUSG00000029001.15 ENSMUSG00000029001 ENSMUST00000173352 Fbxo44 protein_coding Interval_87939 chr19 57223019 57223228 + 0 NA intron (ENSMUSG00000025085.16, intron 1 of 20) protein_coding-intron (ENSMUSG00000025085.16, intron 1 of 6) -50837 ENSMUSG00000117684.1 ENSMUSG00000117684 ENSMUST00000237596 4930449E18Rik antisense Interval_113941 chr4 60486049 60486294 + 0 NA Intergenic Intergenic 6763 ENSMUSG00000094202.1 ENSMUSG00000094202 ENSMUST00000121751 Mup-ps26 processed_pseudogene Interval_135918 chr6 48666944 48667137 + 0 NA Intergenic Intergenic -1180 ENSMUSG00000108117.1 ENSMUSG00000108117 ENSMUST00000204969 Gm44262 processed_pseudogene Interval_28146 chr11 73167888 73169757 + 0 NA intron (ENSMUSG00000005950.14, intron 10 of 12) protein_coding-intron (ENSMUSG00000005950.14, intron 10 of 12) 8180 ENSMUSG00000047260.4 ENSMUSG00000047260 ENSMUST00000108480 Emc6 protein_coding Interval_32084 chr11 105173272 105173889 + 0 NA Intergenic Intergenic -6960 ENSMUSG00000081965.1 ENSMUSG00000081965 ENSMUST00000118770 Gm11620 processed_pseudogene Interval_111033 chr4 11369617 11370395 + 0 NA intron (ENSMUSG00000040728.15, intron 4 of 10) protein_coding-intron (ENSMUSG00000040728.15, intron 4 of 14) 16388 ENSMUSG00000040728.15 ENSMUSG00000040728 ENSMUST00000155519 Esrp1 protein_coding Interval_161116 chr8 117578554 117579511 + 0 NA intron (ENSMUSG00000034330.10, intron 10 of 32) protein_coding-intron (ENSMUSG00000034330.10, intron 10 of 32) -32006 ENSMUSG00000092818.2 ENSMUSG00000092818 ENSMUST00000175077 Gm27361 miRNA Interval_109988 chr3 152332246 152333286 + 0 NA exon (ENSMUSG00000054942.13, exon 4 of 4) protein_coding-exon (ENSMUSG00000054942.13, exon 4 of 4) 7618 ENSMUSG00000054942.13 ENSMUSG00000054942 ENSMUST00000200241 Miga1 protein_coding Interval_38166 chr12 76107145 76107559 + 0 NA intron (ENSMUSG00000063450.14, intron 111 of 114) protein_coding-intron (ENSMUSG00000063450.14, intron 111 of 115) 45275 ENSMUSG00000046580.10 ENSMUSG00000046580 ENSMUST00000121461 Gm7862 processed_pseudogene Interval_119872 chr4 140614278 140614611 + 0 NA intron (ENSMUSG00000040964.16, intron 1 of 4) protein_coding-intron (ENSMUSG00000040964.16, intron 2 of 27) 2621 ENSMUSG00000040964.16 ENSMUSG00000040964 ENSMUST00000154979 Arhgef10l protein_coding Interval_130689 chr5 129770804 129771048 + 0 NA TTS (ENSMUSG00000029446.14) protein_coding-TTS (ENSMUSG00000029446.14) 16281 ENSMUSG00000029446.14 ENSMUSG00000029446 ENSMUST00000202374 Psph protein_coding Interval_109126 chr3 136007324 136008023 + 0 NA intron (ENSMUSG00000104710.1, intron 1 of 3) antisense-intron (ENSMUSG00000104710.1, intron 1 of 3) -43915 ENSMUSG00000105937.1 ENSMUSG00000105937 ENSMUST00000196772 Gm43602 processed_pseudogene Interval_98840 chr2 155472521 155474625 + 0 NA intron (ENSMUSG00000038369.14, intron 1 of 15) protein_coding-intron (ENSMUSG00000038369.14, intron 1 of 15) -12681 ENSMUSG00000080237.2 ENSMUSG00000080237 ENSMUST00000116491 Gm14239 processed_pseudogene Interval_121954 chr5 12495847 12496072 + 0 NA intron (ENSMUSG00000040254.11, intron 4 of 16) protein_coding-intron (ENSMUSG00000040254.11, intron 4 of 17) -16331 ENSMUSG00000105854.1 ENSMUSG00000105854 ENSMUST00000197212 Gm8925 processed_pseudogene Interval_72432 chr17 29773292 29773922 + 0 NA Intergenic Intergenic 45780 ENSMUSG00000117489.1 ENSMUSG00000117489 ENSMUST00000234919 Gm50016 lincRNA Interval_4647 chr1 75642285 75642725 + 0 NA Intergenic Intergenic 6115 ENSMUSG00000082012.1 ENSMUSG00000082012 ENSMUST00000121823 Gm5257 processed_pseudogene Interval_73411 chr17 37049787 37051017 + 0 NA promoter-TSS (ENSMUSG00000024462.17) protein_coding-promoter-TSS (ENSMUSG00000024462.17) -5310 ENSMUSG00000024462.17 ENSMUSG00000024462 ENSMUST00000174071 Gabbr1 protein_coding Interval_50288 chr14 11670577 11671198 + 0 NA intron (ENSMUSG00000021745.14, intron 1 of 3) protein_coding-intron (ENSMUSG00000021745.14, intron 1 of 29) -97056 ENSMUSG00000114310.1 ENSMUSG00000114310 ENSMUST00000225152 Gm48602 TEC Interval_85399 chr19 25486417 25489786 + 0 NA Intergenic Intergenic -5736 ENSMUSG00000117720.1 ENSMUSG00000117720 ENSMUST00000238117 Gm5249 processed_pseudogene Interval_154796 chr8 23424239 23424789 + 0 NA intron (ENSMUSG00000031548.7, intron 2 of 2) protein_coding-intron (ENSMUSG00000031548.7, intron 2 of 2) 13012 ENSMUSG00000031548.7 ENSMUSG00000031548 ENSMUST00000033952 Sfrp1 protein_coding Interval_2619 chr1 42392177 42392386 + 0 NA Intergenic Intergenic -36344 ENSMUSG00000100180.1 ENSMUSG00000100180 ENSMUST00000190148 Gm28140 lincRNA Interval_124403 chr5 45534145 45535069 + 0 NA exon (ENSMUSG00000015879.8, exon 1 of 2) protein_coding-exon (ENSMUSG00000015879.8, exon 1 of 2) 1935 ENSMUSG00000015879.8 ENSMUSG00000015879 ENSMUST00000016023 Fam184b protein_coding Interval_28272 chr11 74810960 74812071 + 0 NA intron (ENSMUSG00000010554.14, intron 1 of 2) protein_coding-intron (ENSMUSG00000010554.14, intron 9 of 10) 8191 ENSMUSG00000010554.14 ENSMUSG00000010554 ENSMUST00000134571 Mettl16 protein_coding Interval_91348 chr2 37997837 37998646 + 0 NA intron (ENSMUSG00000035392.17, intron 7 of 9) protein_coding-intron (ENSMUSG00000035392.17, intron 10 of 21) 20926 ENSMUSG00000107586.1 ENSMUSG00000107586 ENSMUST00000204461 Gm44283 TEC Interval_59917 chr15 61927419 61928529 + 0 NA Intergenic Intergenic 55328 ENSMUSG00000103610.1 ENSMUSG00000103610 ENSMUST00000192740 Gm37947 TEC Interval_117617 chr4 125075867 125076531 + 0 NA Intergenic Intergenic 8748 ENSMUSG00000086342.1 ENSMUSG00000086342 ENSMUST00000143705 Gm12932 antisense Interval_153304 chr7 143480073 143481032 + 0 NA intron (ENSMUSG00000000154.16, intron 3 of 6) protein_coding-intron (ENSMUSG00000000154.16, intron 5 of 10) 6784 ENSMUSG00000000154.16 ENSMUSG00000000154 ENSMUST00000105917 Slc22a18 protein_coding Interval_153504 chr7 145278270 145278480 + 0 NA intron (ENSMUSG00000048677.9, intron 4 of 5) protein_coding-intron (ENSMUSG00000048677.9, intron 4 of 24) 5547 ENSMUSG00000048677.9 ENSMUSG00000048677 ENSMUST00000209156 Tpcn2 protein_coding Interval_102953 chr3 33494100 33494307 + 0 NA Intergenic Intergenic -99356 ENSMUSG00000104203.1 ENSMUSG00000104203 ENSMUST00000191914 Gm37398 TEC Interval_112142 chr4 34918992 34920778 + 0 NA intron (ENSMUSG00000083956.1, intron 1 of 2) processed_pseudogene-intron (ENSMUSG00000083956.1, intron 1 of 2) 756 ENSMUSG00000083956.1 ENSMUSG00000083956 ENSMUST00000119806 Gm12361 processed_pseudogene Interval_19846 chr10 110284922 110285314 + 0 NA intron (ENSMUSG00000020181.18, intron 2 of 40) protein_coding-intron (ENSMUSG00000020181.18, intron 2 of 4) -94390 ENSMUSG00000112548.1 ENSMUSG00000112548 ENSMUST00000219876 Gm47338 TEC Interval_16173 chr10 61215825 61216082 + 0 NA intron (ENSMUSG00000059901.12, intron 12 of 21) protein_coding-intron (ENSMUSG00000059901.12, intron 12 of 21) 40691 ENSMUSG00000020096.21 ENSMUSG00000020096 ENSMUST00000126831 Tbata protein_coding Interval_142087 chr6 137061896 137062502 + 0 NA intron (ENSMUSG00000030222.13, intron 2 of 3) protein_coding-intron (ENSMUSG00000030222.13, intron 3 of 4) 75603 ENSMUSG00000107734.1 ENSMUSG00000107734 ENSMUST00000203175 Gm30055 TEC Interval_162329 chr8 127152815 127153745 + 0 NA intron (ENSMUSG00000025812.18, intron 2 of 3) protein_coding-intron (ENSMUSG00000025812.18, intron 1 of 23) -18124 ENSMUSG00000025812.18 ENSMUSG00000025812 ENSMUST00000159940 Pard3 protein_coding Interval_69947 chr17 3436859 3437101 + 0 NA intron (ENSMUSG00000023800.15, intron 6 of 7) protein_coding-intron (ENSMUSG00000023800.15, intron 6 of 26) 25352 ENSMUSG00000115039.1 ENSMUSG00000115039 ENSMUST00000228135 Gm7043 processed_pseudogene Interval_87063 chr19 45881654 45882806 + 0 NA intron (ENSMUSG00000039901.10, intron 23 of 25) protein_coding-intron (ENSMUSG00000039901.10, intron 23 of 25) -4104 ENSMUSG00000117972.1 ENSMUSG00000117972 ENSMUST00000236365 Gm6813 processed_pseudogene Interval_160975 chr8 116611537 116612701 + 0 NA intron (ENSMUSG00000031758.10, intron 2 of 6) protein_coding-intron (ENSMUSG00000031758.10, intron 2 of 6) 107145 ENSMUSG00000034467.7 ENSMUSG00000034467 ENSMUST00000078170 Dynlrb2 protein_coding Interval_58870 chr15 39426837 39427209 + 0 NA intron (ENSMUSG00000037386.16, intron 1 of 2) protein_coding-intron (ENSMUSG00000037386.16, intron 3 of 26) -10215 ENSMUSG00000037386.16 ENSMUSG00000037386 ENSMUST00000226410 Rims2 protein_coding Interval_146237 chr7 44895631 44896439 + 0 NA promoter-TSS (ENSMUSG00000011658.16) protein_coding-promoter-TSS (ENSMUSG00000011658.16) -1262 ENSMUSG00000011658.16 ENSMUSG00000011658 ENSMUST00000207833 Fuz protein_coding Interval_4211 chr1 71634752 71636042 + 0 NA intron (ENSMUSG00000026193.15, intron 12 of 43) protein_coding-intron (ENSMUSG00000026193.15, intron 12 of 45) -17491 ENSMUSG00000073652.10 ENSMUSG00000073652 ENSMUST00000125934 Apol7d antisense Interval_96921 chr2 129547490 129548030 + 0 NA Intergenic Intergenic -11158 ENSMUSG00000043727.5 ENSMUSG00000043727 ENSMUST00000050309 F830045P16Rik protein_coding Interval_32407 chr11 107382036 107383083 + 0 NA intron (ENSMUSG00000040430.18, intron 1 of 9) protein_coding-intron (ENSMUSG00000040430.18, intron 1 of 9) -4424 ENSMUSG00000087683.1 ENSMUSG00000087683 ENSMUST00000129139 Gm11712 antisense Interval_22922 chr11 17417913 17418174 + 0 NA Intergenic Intergenic -119624 ENSMUSG00000082797.3 ENSMUSG00000082797 ENSMUST00000117065 Gm12015 processed_pseudogene Interval_117727 chr4 125863944 125864164 + 0 NA Intergenic Intergenic 58363 ENSMUSG00000085562.7 ENSMUSG00000085562 ENSMUST00000144539 2610028E06Rik lincRNA Interval_146505 chr7 46492066 46492510 + 0 NA intron (ENSMUSG00000030839.12, intron 3 of 3) protein_coding-intron (ENSMUSG00000030839.12, intron 10 of 10) 20492 ENSMUSG00000110316.1 ENSMUSG00000110316 ENSMUST00000211086 Gm45311 sense_intronic Interval_68182 chr16 67018901 67019101 + 0 NA intron (ENSMUSG00000064115.13, intron 1 of 9) protein_coding-intron (ENSMUSG00000064115.13, intron 1 of 9) -93417 ENSMUSG00000064115.13 ENSMUSG00000064115 ENSMUST00000141282 Cadm2 protein_coding Interval_157555 chr8 71403187 71403654 + 0 NA TTS (ENSMUSG00000031820.9) protein_coding-TTS (ENSMUSG00000031820.9) -4271 ENSMUSG00000046295.13 ENSMUSG00000046295 ENSMUST00000136522 Ankle1 protein_coding Interval_142189 chr6 137997654 137997855 + 0 NA intron (ENSMUSG00000044378.12, intron 7 of 8) protein_coding-intron (ENSMUSG00000044378.12, intron 6 of 7) -77783 ENSMUSG00000094466.1 ENSMUSG00000094466 ENSMUST00000177773 Gm24308 miRNA Interval_40113 chr12 101605268 101605628 + 0 NA intron (ENSMUSG00000047014.7, intron 21 of 25) protein_coding-intron (ENSMUSG00000047014.7, intron 22 of 26) -40738 ENSMUSG00000090152.1 ENSMUSG00000090152 ENSMUST00000162999 Gm16285 processed_pseudogene Interval_63142 chr15 99332963 99334195 + 0 NA intron (ENSMUSG00000023008.18, intron 2 of 5) protein_coding-intron (ENSMUSG00000023008.18, intron 4 of 24) 2148 ENSMUSG00000023008.18 ENSMUSG00000023008 ENSMUST00000140368 Fmnl3 protein_coding Interval_21342 chr10 128077861 128078530 + 0 NA TTS (ENSMUSG00000071072.12) protein_coding-TTS (ENSMUSG00000071072.12) 4775 ENSMUSG00000111947.1 ENSMUSG00000111947 ENSMUST00000217728 Gm47438 lincRNA Interval_111532 chr4 22564636 22564966 + 0 NA Intergenic Intergenic -35792 ENSMUSG00000083514.1 ENSMUSG00000083514 ENSMUST00000119408 Gm11881 processed_pseudogene Interval_77807 chr18 3854381 3855338 + 0 NA Intergenic Intergenic 3721 ENSMUSG00000117463.1 ENSMUSG00000117463 ENSMUST00000234895 Rpl7a-ps6 processed_pseudogene Interval_17033 chr10 70708572 70710103 + 0 NA Intergenic Intergenic 29507 ENSMUSG00000112607.1 ENSMUSG00000112607 ENSMUST00000219486 Gm33979 lincRNA Interval_51500 chr14 28555446 28555681 + 0 NA Intergenic Intergenic -44171 ENSMUSG00000097002.1 ENSMUSG00000097002 ENSMUST00000180668 Gm2670 antisense Interval_22480 chr11 10931028 10931390 + 0 NA Intergenic Intergenic -185276 ENSMUSG00000050830.17 ENSMUSG00000050830 ENSMUST00000154155 Vwc2 protein_coding Interval_89547 chr2 22358691 22358986 + 0 NA intron (ENSMUSG00000025716.14, intron 13 of 17) protein_coding-intron (ENSMUSG00000025716.14, intron 14 of 33) 51893 ENSMUSG00000082516.1 ENSMUSG00000082516 ENSMUST00000121055 Gm13342 processed_pseudogene Interval_47645 chr13 90691978 90692591 + 0 NA Intergenic Intergenic 58199 ENSMUSG00000103069.1 ENSMUSG00000103069 ENSMUST00000192217 Gm36966 TEC Interval_18266 chr10 84433251 84433880 + 0 NA intron (ENSMUSG00000020032.14, intron 1 of 6) protein_coding-intron (ENSMUSG00000020032.14, intron 1 of 6) -7261 ENSMUSG00000111583.1 ENSMUSG00000111583 ENSMUST00000214135 Gm47962 bidirectional_promoter_lncRNA Interval_27066 chr11 62647154 62649325 + 0 NA promoter-TSS (ENSMUSG00000048497.11) protein_coding-promoter-TSS (ENSMUSG00000048497.11) -190 ENSMUSG00000046417.14 ENSMUSG00000046417 ENSMUST00000143262 Lrrc75a protein_coding Interval_39422 chr12 87323668 87324311 + 0 NA intron (ENSMUSG00000021036.10, intron 3 of 5) protein_coding-intron (ENSMUSG00000021036.10, intron 9 of 11) 4624 ENSMUSG00000021036.10 ENSMUSG00000021036 ENSMUST00000167911 Sptlc2 protein_coding Interval_66923 chr16 38555142 38556161 + 0 NA Intergenic Intergenic -5429 ENSMUSG00000034064.14 ENSMUSG00000034064 ENSMUST00000137762 Poglut1 protein_coding Interval_103391 chr3 41162514 41162810 + 0 NA TTS (ENSMUSG00000105258.1) lincRNA-TTS (ENSMUSG00000105258.1) 10001 ENSMUSG00000105258.1 ENSMUSG00000105258 ENSMUST00000197878 Gm40038 lincRNA Interval_7517 chr1 131945684 131946842 + 0 NA Intergenic Intergenic -13293 ENSMUSG00000103975.1 ENSMUSG00000103975 ENSMUST00000195496 Gm37676 TEC Interval_160952 chr8 116144072 116144493 + 0 NA Intergenic Intergenic 43087 ENSMUSG00000110476.1 ENSMUSG00000110476 ENSMUST00000212419 4930422C21Rik lincRNA Interval_130307 chr5 125545284 125547303 + 0 NA intron (ENSMUSG00000070498.3, intron 1 of 8) protein_coding-intron (ENSMUSG00000070498.3, intron 1 of 8) 14519 ENSMUSG00000070498.3 ENSMUSG00000070498 ENSMUST00000184422 Tmem132b protein_coding Interval_119656 chr4 139039802 139040063 + 0 NA intron (ENSMUSG00000041143.16, intron 14 of 16) protein_coding-intron (ENSMUSG00000041143.16, intron 13 of 15) 35638 ENSMUSG00000028747.10 ENSMUSG00000028747 ENSMUST00000068036 Htr6 protein_coding Interval_34226 chr11 121426048 121426408 + 0 NA intron (ENSMUSG00000039253.7, intron 3 of 5) protein_coding-intron (ENSMUSG00000039253.7, intron 3 of 5) 4827 ENSMUSG00000039253.7 ENSMUSG00000039253 ENSMUST00000038096 Fn3krp protein_coding Interval_31281 chr11 99314668 99315030 + 0 NA TTS (ENSMUSG00000035831.2) protein_coding-TTS (ENSMUSG00000035831.2) 8102 ENSMUSG00000035831.2 ENSMUSG00000035831 ENSMUST00000038004 Krt25 protein_coding Interval_67175 chr16 44147107 44148098 + 0 NA intron (ENSMUSG00000022698.17, intron 2 of 5) protein_coding-intron (ENSMUSG00000022698.17, intron 1 of 4) 7749 ENSMUSG00000022698.17 ENSMUSG00000022698 ENSMUST00000063542 Naa50 protein_coding Interval_32586 chr11 108909478 108912534 + 0 NA Intergenic Intergenic -10330 ENSMUSG00000000142.15 ENSMUSG00000000142 ENSMUST00000139682 Axin2 protein_coding Interval_121641 chr5 4176674 4177012 + 0 NA Intergenic Intergenic -15524 ENSMUSG00000053178.5 ENSMUSG00000053178 ENSMUST00000177258 Mterf1b protein_coding Interval_120086 chr4 141734623 141735404 + 0 NA Intergenic Intergenic -11594 ENSMUSG00000078515.4 ENSMUSG00000078515 ENSMUST00000177592 Ddi2 protein_coding Interval_165437 chr9 47904362 47904734 + 0 NA Intergenic Intergenic 43613 ENSMUSG00000111668.1 ENSMUSG00000111668 ENSMUST00000215015 Gm47213 processed_pseudogene Interval_82048 chr18 67358812 67358980 + 0 NA intron (ENSMUSG00000024526.9, intron 2 of 4) protein_coding-intron (ENSMUSG00000024526.9, intron 2 of 4) -14793 ENSMUSG00000046415.11 ENSMUSG00000046415 ENSMUST00000138236 B430212C06Rik processed_transcript Interval_82939 chr18 79772066 79772467 + 0 NA Intergenic Intergenic -71009 ENSMUSG00000117709.1 ENSMUSG00000117709 ENSMUST00000237884 Gm50178 processed_pseudogene Interval_18036 chr10 81484108 81485313 + 0 NA Intergenic Intergenic -2006 ENSMUSG00000034818.17 ENSMUSG00000034818 ENSMUST00000147524 Celf5 protein_coding Interval_124526 chr5 50032234 50033017 + 0 NA intron (ENSMUSG00000029090.12, intron 1 of 18) protein_coding-intron (ENSMUSG00000029090.12, intron 1 of 18) 26020 ENSMUSG00000029090.12 ENSMUSG00000029090 ENSMUST00000199132 Adgra3 protein_coding Interval_121515 chr5 3094541 3094782 + 0 NA intron (ENSMUSG00000091936.1, intron 3 of 3) unprocessed_pseudogene-intron (ENSMUSG00000091936.1, intron 3 of 3) 3892 ENSMUSG00000091936.1 ENSMUSG00000091936 ENSMUST00000161709 Gm3053 unprocessed_pseudogene Interval_101081 chr2 177205862 177207001 + 0 NA promoter-TSS (ENSMUSG00000078870.9) protein_coding-promoter-TSS (ENSMUSG00000078870.9) -10670 ENSMUSG00000078870.9 ENSMUSG00000078870 ENSMUST00000108964 Gm14410 protein_coding Interval_21851 chr11 4745696 4747410 + 0 NA intron (ENSMUSG00000009075.2, intron 1 of 4) protein_coding-intron (ENSMUSG00000009075.2, intron 1 of 4) 225 ENSMUSG00000009075.2 ENSMUSG00000009075 ENSMUST00000009219 Cabp7 protein_coding Interval_37232 chr12 61730678 61731005 + 0 NA intron (ENSMUSG00000035653.16, intron 2 of 5) protein_coding-intron (ENSMUSG00000035653.16, intron 2 of 3) -21705 ENSMUSG00000113588.1 ENSMUSG00000113588 ENSMUST00000220943 Gm48328 TEC Interval_23484 chr11 22878771 22879456 + 0 NA intron (ENSMUSG00000098650.1, intron 2 of 2) protein_coding-intron (ENSMUSG00000098650.1, intron 2 of 2) 10212 ENSMUSG00000065869.1 ENSMUSG00000065869 ENSMUST00000083935 Gm24917 snRNA Interval_123866 chr5 36103167 36103691 + 0 NA intron (ENSMUSG00000029093.14, intron 3 of 7) protein_coding-intron (ENSMUSG00000029093.14, intron 3 of 26) -100592 ENSMUSG00000043430.5 ENSMUSG00000043430 ENSMUST00000052224 Psapl1 protein_coding Interval_15941 chr10 59524534 59525600 + 0 NA intron (ENSMUSG00000009647.13, intron 1 of 7) protein_coding-intron (ENSMUSG00000009647.13, intron 1 of 7) -90997 ENSMUSG00000071280.2 ENSMUSG00000071280 ENSMUST00000238281 Gm10322 antisense Interval_130109 chr5 124338053 124339960 + 0 NA exon (ENSMUSG00000047635.6, exon 2 of 2) protein_coding-exon (ENSMUSG00000047635.6, exon 2 of 2) 10917 ENSMUSG00000047635.6 ENSMUSG00000047635 ENSMUST00000077376 2810006K23Rik protein_coding Interval_39298 chr12 86519639 86520582 + 0 NA TTS (ENSMUSG00000021255.17) protein_coding-TTS (ENSMUSG00000021255.17) 49993 ENSMUSG00000021255.17 ENSMUSG00000021255 ENSMUST00000136464 Esrrb protein_coding Interval_132617 chr5 146766399 146767150 + 0 NA intron (ENSMUSG00000029640.17, intron 2 of 8) protein_coding-intron (ENSMUSG00000029640.17, intron 2 of 8) -8326 ENSMUSG00000029640.17 ENSMUSG00000029640 ENSMUST00000124009 Usp12 protein_coding Interval_44943 chr13 50439681 50440208 + 0 NA intron (ENSMUSG00000101136.1, intron 1 of 1) antisense-intron (ENSMUSG00000101136.1, intron 1 of 1) 3968 ENSMUSG00000114559.1 ENSMUSG00000114559 ENSMUST00000225905 Gm47429 protein_coding Interval_47292 chr13 80812138 80812661 + 0 NA Intergenic Intergenic 73125 ENSMUSG00000089827.1 ENSMUSG00000089827 ENSMUST00000161006 1700023H06Rik processed_transcript Interval_49795 chr13 115488787 115489549 + 0 NA Intergenic Intergenic 40604 ENSMUSG00000114551.1 ENSMUSG00000114551 ENSMUST00000225901 Gm6035 processed_pseudogene Interval_146937 chr7 56018830 56019968 + 0 NA intron (ENSMUSG00000047037.5, intron 1 of 4) protein_coding-intron (ENSMUSG00000047037.5, intron 1 of 4) 555 ENSMUSG00000047037.5 ENSMUSG00000047037 ENSMUST00000052204 Nipa1 protein_coding Interval_161383 chr8 120110438 120110749 + 0 NA exon (ENSMUSG00000102665.1, exon 1 of 1) TEC-exon (ENSMUSG00000102665.1, exon 1 of 1) 1152 ENSMUSG00000102665.1 ENSMUSG00000102665 ENSMUST00000194351 Gm38379 TEC Interval_31502 chr11 101057893 101059323 + 0 NA intron (ENSMUSG00000019302.16, intron 21 of 21) protein_coding-intron (ENSMUSG00000019302.16, intron 21 of 21) -12944 ENSMUSG00000001751.9 ENSMUSG00000001751 ENSMUST00000138409 Naglu protein_coding Interval_33295 chr11 115752954 115753140 + 0 NA Intergenic Intergenic 23581 ENSMUSG00000084130.1 ENSMUSG00000084130 ENSMUST00000120031 Gm11704 processed_pseudogene Interval_18204 chr10 83685606 83686281 + 0 NA Intergenic Intergenic 26672 ENSMUSG00000112072.1 ENSMUSG00000112072 ENSMUST00000218849 Gm47244 processed_pseudogene Interval_149499 chr7 99140602 99141842 + 0 NA promoter-TSS (ENSMUSG00000035354.9) protein_coding-promoter-TSS (ENSMUSG00000035354.9) -371 ENSMUSG00000109468.1 ENSMUSG00000109468 ENSMUST00000207556 Gm45185 TEC Interval_38441 chr12 79054675 79055665 + 0 NA exon (ENSMUSG00000060716.7, exon 7 of 29) protein_coding-exon (ENSMUSG00000060716.7, exon 7 of 29) 19534 ENSMUSG00000060716.7 ENSMUSG00000060716 ENSMUST00000219946 Plekhh1 protein_coding Interval_73484 chr17 37906318 37907090 + 0 NA TTS (ENSMUSG00000058114.3) protein_coding-TTS (ENSMUSG00000058114.3) 6267 ENSMUSG00000058114.3 ENSMUSG00000058114 ENSMUST00000076331 Olfr127 protein_coding Interval_125970 chr5 76346310 76346932 + 0 NA intron (ENSMUSG00000029236.4, intron 3 of 9) protein_coding-intron (ENSMUSG00000029236.4, intron 3 of 9) 15383 ENSMUSG00000087037.1 ENSMUSG00000087037 ENSMUST00000132154 4930432L08Rik processed_transcript Interval_27104 chr11 62920965 62922278 + 0 NA promoter-TSS (ENSMUSG00000086677.1) antisense-promoter-TSS (ENSMUSG00000086677.1) -29 ENSMUSG00000086677.1 ENSMUSG00000086677 ENSMUST00000148598 Tvp23bos antisense Interval_117430 chr4 123642745 123643866 + 0 NA intron (ENSMUSG00000028649.21, intron 1 of 97) protein_coding-intron (ENSMUSG00000028649.21, intron 1 of 92) 13010 ENSMUSG00000081585.1 ENSMUSG00000081585 ENSMUST00000121158 Gm12926 processed_pseudogene Interval_140993 chr6 123964272 123964563 + 0 NA intron (ENSMUSG00000093385.3, intron 3 of 7) transcribed_unprocessed_pseudogene-intron (ENSMUSG00000093385.3, intron 3 of 7) 9534 ENSMUSG00000088999.1 ENSMUSG00000088999 ENSMUST00000158374 Gm22763 snoRNA Interval_97956 chr2 146117223 146119008 + 0 NA intron (ENSMUSG00000037143.17, intron 6 of 6) protein_coding-intron (ENSMUSG00000037143.17, intron 6 of 6) -96498 ENSMUSG00000037143.17 ENSMUSG00000037143 ENSMUST00000167179 Cfap61 protein_coding Interval_151962 chr7 127815900 127816868 + 0 NA intron (ENSMUSG00000030806.6, intron 1 of 9) protein_coding-intron (ENSMUSG00000030806.6, intron 1 of 9) -2877 ENSMUSG00000108808.1 ENSMUSG00000108808 ENSMUST00000206297 Gm45204 TEC Interval_100775 chr2 172471716 172471989 + 0 NA promoter-TSS (ENSMUSG00000027505.2) protein_coding-promoter-TSS (ENSMUSG00000027505.2) -668 ENSMUSG00000027505.2 ENSMUSG00000027505 ENSMUST00000029007 Fam209 protein_coding Interval_76103 chr17 74993869 74995548 + 0 NA Intergenic Intergenic -10860 ENSMUSG00000001870.16 ENSMUSG00000001870 ENSMUST00000135750 Ltbp1 protein_coding Interval_27981 chr11 71874038 71874442 + 0 NA Intergenic Intergenic -26034 ENSMUSG00000077456.1 ENSMUSG00000077456 ENSMUST00000104268 Gm22927 snoRNA Interval_49343 chr13 111373591 111374240 + 0 NA Intergenic Intergenic -5235 ENSMUSG00000086201.1 ENSMUSG00000086201 ENSMUST00000132731 Gm6270 lincRNA Interval_58579 chr15 36328200 36329197 + 0 NA Intergenic Intergenic -19754 ENSMUSG00000068579.5 ENSMUSG00000068579 ENSMUST00000090170 Rpl7a-ps3 processed_pseudogene Interval_172168 chrX 8143934 8146274 + 0 NA promoter-TSS (ENSMUSG00000055188.12) antisense-promoter-TSS (ENSMUSG00000055188.12) -813 ENSMUSG00000055188.12 ENSMUSG00000055188 ENSMUST00000133616 Rbm3os antisense Interval_114433 chr4 76367261 76367602 + 0 NA intron (ENSMUSG00000028399.18, intron 1 of 30) protein_coding-intron (ENSMUSG00000028399.18, intron 10 of 14) -25723 ENSMUSG00000080780.1 ENSMUSG00000080780 ENSMUST00000120572 Gm11252 processed_pseudogene Interval_27894 chr11 70681112 70682843 + 0 NA intron (ENSMUSG00000040712.16, intron 7 of 20) protein_coding-intron (ENSMUSG00000040712.16, intron 8 of 22) 5971 ENSMUSG00000040712.16 ENSMUSG00000040712 ENSMUST00000150224 Camta2 protein_coding Interval_141150 chr6 125268691 125269210 + 0 NA exon (ENSMUSG00000108129.2, exon 3 of 4) processed_transcript-exon (ENSMUSG00000108129.2, exon 3 of 4) 3331 ENSMUSG00000108129.2 ENSMUSG00000108129 ENSMUST00000205000 4930417O13Rik processed_transcript Interval_73286 chr17 35978740 35980795 + 0 NA promoter-TSS (ENSMUSG00000024429.9) protein_coding-promoter-TSS (ENSMUSG00000024429.9) 41 ENSMUSG00000038500.15 ENSMUSG00000038500 ENSMUST00000173417 Prr3 protein_coding Interval_163034 chr9 14697609 14699266 + 0 NA intron (ENSMUSG00000036912.18, intron 4 of 4) protein_coding-intron (ENSMUSG00000036912.18, intron 4 of 4) 4914 ENSMUSG00000111483.1 ENSMUSG00000111483 ENSMUST00000216353 Gm18997 processed_pseudogene Interval_172461 chrX 20762192 20762991 + 0 NA Intergenic Intergenic -16225 ENSMUSG00000118509.1 ENSMUSG00000118509 ENSMUST00000238979 AL671885.1 unprocessed_pseudogene Interval_67206 chr16 44409850 44410385 + 0 NA intron (ENSMUSG00000071550.14, intron 1 of 13) protein_coding-intron (ENSMUSG00000071550.14, intron 6 of 34) 15321 ENSMUSG00000071550.14 ENSMUSG00000071550 ENSMUST00000127303 Cfap44 protein_coding Interval_26518 chr11 58329966 58331367 + 0 NA promoter-TSS (ENSMUSG00000049755.14) protein_coding-promoter-TSS (ENSMUSG00000049755.14) -335 ENSMUSG00000049755.14 ENSMUSG00000049755 ENSMUST00000065533 Zfp672 protein_coding Interval_91941 chr2 51841706 51842439 + 0 NA Intergenic Intergenic -23503 ENSMUSG00000081484.1 ENSMUSG00000081484 ENSMUST00000119772 Gm13492 processed_pseudogene Interval_150293 chr7 109383086 109383927 + 0 NA intron (ENSMUSG00000031027.15, intron 1 of 13) protein_coding-intron (ENSMUSG00000031027.15, intron 1 of 12) 5369 ENSMUSG00000081370.1 ENSMUSG00000081370 ENSMUST00000120160 Gm9105 processed_pseudogene Interval_49263 chr13 109922376 109923218 + 0 NA promoter-TSS (ENSMUSG00000021699.17) protein_coding-promoter-TSS (ENSMUSG00000021699.17) 18988 ENSMUSG00000084651.1 ENSMUSG00000084651 ENSMUST00000122702 Mir1904 miRNA Interval_2900 chr1 48715014 48715689 + 0 NA Intergenic Intergenic 17739 ENSMUSG00000101721.1 ENSMUSG00000101721 ENSMUST00000189223 Gm8354 processed_pseudogene Interval_173977 chrX 120944354 120944891 + 0 NA Intergenic Intergenic -13089 ENSMUSG00000083275.1 ENSMUSG00000083275 ENSMUST00000118719 Gm4993 processed_pseudogene Interval_151220 chr7 119807303 119808207 + 0 NA intron (ENSMUSG00000030924.16, intron 2 of 3) protein_coding-intron (ENSMUSG00000030924.16, intron 5 of 12) -13697 ENSMUSG00000030929.17 ENSMUSG00000030929 ENSMUST00000133926 Eri2 protein_coding Interval_23335 chr11 21509524 21509755 + 0 NA intron (ENSMUSG00000078962.4, intron 1 of 8) lincRNA-intron (ENSMUSG00000078962.4, intron 1 of 8) -1921 ENSMUSG00000078962.4 ENSMUSG00000078962 ENSMUST00000165732 4932414J04Rik lincRNA Interval_147295 chr7 65617470 65618177 + 0 NA exon (ENSMUSG00000086662.7, exon 8 of 8) lincRNA-exon (ENSMUSG00000086662.7, exon 8 of 8) 17963 ENSMUSG00000086232.2 ENSMUSG00000086232 ENSMUST00000211354 Gm7546 transcribed_unprocessed_pseudogene Interval_138135 chr6 85391745 85392220 + 0 NA Intergenic Intergenic -32086 ENSMUSG00000068302.8 ENSMUSG00000068302 ENSMUST00000174469 Noto protein_coding Interval_142551 chr6 143208848 143209374 + 0 NA TTS (ENSMUSG00000030275.6) protein_coding-TTS (ENSMUSG00000030275.6) 12337 ENSMUSG00000107802.1 ENSMUSG00000107802 ENSMUST00000204351 1700126G02Rik antisense Interval_142096 chr6 137135762 137136793 + 0 NA intron (ENSMUSG00000030222.13, intron 2 of 2) protein_coding-intron (ENSMUSG00000030222.13, intron 2 of 4) 3786 ENSMUSG00000030222.13 ENSMUSG00000030222 ENSMUST00000149100 Rerg protein_coding Interval_79829 chr18 35435747 35436051 + 0 NA intron (ENSMUSG00000024357.10, intron 2 of 3) protein_coding-intron (ENSMUSG00000024357.10, intron 2 of 9) -53205 ENSMUSG00000117731.1 ENSMUSG00000117731 ENSMUST00000237123 Gm50145 antisense Interval_98742 chr2 154627855 154628155 + 0 NA exon (ENSMUSG00000059842.12, exon 5 of 15) protein_coding-exon (ENSMUSG00000059842.12, exon 5 of 15) 4631 ENSMUSG00000085483.1 ENSMUSG00000085483 ENSMUST00000153208 Gm14198 antisense Interval_69754 chr16 96043912 96045372 + 0 NA exon (ENSMUSG00000022914.17, exon 19 of 42) protein_coding-exon (ENSMUSG00000022914.17, exon 19 of 42) -3674 ENSMUSG00000098733.1 ENSMUSG00000098733 ENSMUST00000184285 Gm27833 miRNA Interval_69118 chr16 90768748 90769006 + 0 NA intron (ENSMUSG00000039929.14, intron 26 of 38) protein_coding-intron (ENSMUSG00000039929.14, intron 3 of 5) 30553 ENSMUSG00000039956.9 ENSMUSG00000039956 ENSMUST00000038197 Mrap protein_coding Interval_157676 chr8 72255524 72255738 + 0 NA intron (ENSMUSG00000003033.15, intron 3 of 3) protein_coding-intron (ENSMUSG00000003033.15, intron 9 of 11) 15535 ENSMUSG00000003033.15 ENSMUSG00000003033 ENSMUST00000151546 Ap1m1 protein_coding Interval_31022 chr11 97761572 97762054 + 0 NA intron (ENSMUSG00000018541.10, intron 2 of 2) protein_coding-intron (ENSMUSG00000018541.10, intron 2 of 9) -6247 ENSMUSG00000084168.3 ENSMUSG00000084168 ENSMUST00000120130 Atp5l2-ps processed_pseudogene Interval_126212 chr5 82448228 82448472 + 0 NA Intergenic Intergenic 111499 ENSMUSG00000106926.1 ENSMUSG00000106926 ENSMUST00000200912 Rpl7-ps7 processed_pseudogene Interval_90660 chr2 31746722 31747818 + 0 NA intron (ENSMUSG00000026842.16, intron 2 of 11) protein_coding-intron (ENSMUSG00000026842.16, intron 1 of 10) 58152 ENSMUSG00000118600.1 ENSMUSG00000118600 ENSMUST00000239231 AL929275.1 protein_coding Interval_127437 chr5 103927530 103928546 + 0 NA Intergenic Intergenic 29159 ENSMUSG00000095133.1 ENSMUSG00000095133 ENSMUST00000179033 Gm24897 snRNA Interval_120212 chr4 144317274 144318523 + 0 NA Intergenic Intergenic -12351 ENSMUSG00000078508.1 ENSMUSG00000078508 ENSMUST00000105751 Gm13128 protein_coding Interval_50951 chr14 21031628 21032480 + 0 NA exon (ENSMUSG00000021823.10, exon 21 of 21) protein_coding-exon (ENSMUSG00000021823.10, exon 21 of 21) 20141 ENSMUSG00000021824.13 ENSMUSG00000021824 ENSMUST00000130370 Ap3m1 protein_coding Interval_28513 chr11 76428887 76430703 + 0 NA intron (ENSMUSG00000017631.19, intron 16 of 22) protein_coding-intron (ENSMUSG00000017631.19, intron 11 of 17) 22590 ENSMUSG00000020843.15 ENSMUSG00000020843 ENSMUST00000164102 Timm22 protein_coding Interval_122546 chr5 23720509 23721054 + 0 NA Intergenic Intergenic -8115 ENSMUSG00000105987.4 ENSMUSG00000105987 ENSMUST00000197153 AI506816 processed_transcript Interval_42423 chr13 13432000 13432209 + 0 NA Intergenic Intergenic -12935 ENSMUSG00000094865.2 ENSMUSG00000094865 ENSMUST00000179046 Gm7426 processed_pseudogene Interval_8092 chr1 135694321 135694674 + 0 NA Intergenic Intergenic -25564 ENSMUSG00000026421.14 ENSMUSG00000026421 ENSMUST00000027677 Csrp1 protein_coding Interval_34452 chr12 4245583 4246476 + 0 NA intron (ENSMUSG00000111916.1, intron 2 of 2) antisense-intron (ENSMUSG00000111916.1, intron 2 of 2) 4896 ENSMUSG00000111916.1 ENSMUSG00000111916 ENSMUST00000220337 4921501I09Rik antisense Interval_144148 chr7 19656283 19657326 + 0 NA intron (ENSMUSG00000002981.10, intron 1 of 12) protein_coding-intron (ENSMUSG00000002981.10, intron 1 of 13) -19058 ENSMUSG00000002981.10 ENSMUSG00000002981 ENSMUST00000208594 Clptm1 protein_coding Interval_92224 chr2 57123234 57124641 + 0 NA promoter-TSS (ENSMUSG00000026826.13) protein_coding-promoter-TSS (ENSMUSG00000026826.13) 66 ENSMUSG00000026826.13 ENSMUSG00000026826 ENSMUST00000128776 Nr4a2 protein_coding Interval_47064 chr13 75062650 75062900 + 0 NA Intergenic Intergenic -48043 ENSMUSG00000021587.5 ENSMUSG00000021587 ENSMUST00000222727 Pcsk1 protein_coding Interval_102619 chr3 28562489 28563201 + 0 NA intron (ENSMUSG00000027692.16, intron 9 of 30) protein_coding-intron (ENSMUSG00000027692.16, intron 9 of 30) 142902 ENSMUSG00000092990.1 ENSMUSG00000092990 ENSMUST00000175249 Mir466q miRNA Interval_41556 chr12 116255522 116255904 + 0 NA exon (ENSMUSG00000042050.8, exon 3 of 3) protein_coding-exon (ENSMUSG00000042050.8, exon 3 of 3) 7273 ENSMUSG00000042050.8 ENSMUSG00000042050 ENSMUST00000221029 Wdr60 protein_coding Interval_2248 chr1 37339818 37340034 + 0 NA intron (ENSMUSG00000026113.17, intron 1 of 25) protein_coding-intron (ENSMUSG00000026113.17, intron 1 of 25) -5754 ENSMUSG00000086064.1 ENSMUSG00000086064 ENSMUST00000141402 4930439A04Rik antisense Interval_7863 chr1 134226893 134227208 + 0 NA intron (ENSMUSG00000042429.8, intron 2 of 2) protein_coding-intron (ENSMUSG00000042429.8, intron 1 of 1) 8314 ENSMUSG00000042429.8 ENSMUSG00000042429 ENSMUST00000187631 Adora1 protein_coding Interval_36071 chr12 35038685 35039178 + 0 NA Intergenic Intergenic -8286 ENSMUSG00000020590.16 ENSMUSG00000020590 ENSMUST00000221870 Snx13 protein_coding Interval_33884 chr11 119192306 119193009 + 0 NA intron (ENSMUSG00000039976.4, intron 3 of 11) protein_coding-intron (ENSMUSG00000039976.4, intron 3 of 11) -8141 ENSMUSG00000085548.1 ENSMUSG00000085548 ENSMUST00000151091 Gm11753 sense_intronic Interval_165540 chr9 49174889 49176096 + 0 NA Intergenic Intergenic 72764 ENSMUSG00000032268.13 ENSMUSG00000032268 ENSMUST00000170426 Tmprss5 protein_coding Interval_22819 chr11 16325500 16326471 + 0 NA intron (ENSMUSG00000048834.16, intron 4 of 6) protein_coding-intron (ENSMUSG00000048834.16, intron 4 of 6) 67922 ENSMUSG00000048834.16 ENSMUSG00000048834 ENSMUST00000207256 Vstm2a protein_coding Interval_48846 chr13 104014046 104014895 + 0 NA Intergenic Intergenic 20103 ENSMUSG00000021710.11 ENSMUSG00000021710 ENSMUST00000224086 Nln protein_coding Interval_156106 chr8 44747277 44747602 + 0 NA Intergenic Intergenic 145606 ENSMUSG00000088523.1 ENSMUSG00000088523 ENSMUST00000157898 Gm26089 rRNA Interval_60236 chr15 68921645 68921967 + 0 NA Intergenic Intergenic -6891 ENSMUSG00000022332.8 ENSMUSG00000022332 ENSMUST00000230073 Khdrbs3 protein_coding Interval_48618 chr13 100687678 100688191 + 0 NA intron (ENSMUSG00000048924.14, intron 6 of 9) protein_coding-intron (ENSMUSG00000048924.14, intron 7 of 11) 18217 ENSMUSG00000048924.14 ENSMUSG00000048924 ENSMUST00000057325 Ccdc125 protein_coding Interval_79238 chr18 26696169 26697030 + 0 NA Intergenic Intergenic 201164 ENSMUSG00000088098.1 ENSMUSG00000088098 ENSMUST00000157473 Gm23674 snoRNA Interval_101071 chr2 174911835 174912518 + 0 NA Intergenic Intergenic 55887 ENSMUSG00000086177.1 ENSMUSG00000086177 ENSMUST00000131690 Gm14616 lincRNA Interval_40807 chr12 108528808 108530015 + 0 NA intron (ENSMUSG00000058070.14, intron 14 of 18) protein_coding-intron (ENSMUSG00000058070.14, intron 16 of 21) 26053 ENSMUSG00000097788.2 ENSMUSG00000097788 ENSMUST00000220796 Gm16596 antisense Interval_91938 chr2 51793292 51794508 + 0 NA Intergenic Intergenic 24669 ENSMUSG00000081484.1 ENSMUSG00000081484 ENSMUST00000119772 Gm13492 processed_pseudogene Interval_114148 chr4 64951628 64951895 + 0 NA Intergenic Intergenic -59469 ENSMUSG00000080805.1 ENSMUSG00000080805 ENSMUST00000118565 Gm11219 processed_pseudogene Interval_31617 chr11 101748905 101749163 + 0 NA intron (ENSMUSG00000034931.15, intron 9 of 20) protein_coding-intron (ENSMUSG00000034931.15, intron 11 of 22) 16005 ENSMUSG00000034931.15 ENSMUSG00000034931 ENSMUST00000141461 Dhx8 protein_coding Interval_33282 chr11 115688132 115690526 + 0 NA intron (ENSMUSG00000059923.13, intron 2 of 3) protein_coding-intron (ENSMUSG00000059923.13, intron 2 of 5) 10599 ENSMUSG00000059923.13 ENSMUSG00000059923 ENSMUST00000135065 Grb2 protein_coding Interval_39904 chr12 99560938 99561556 + 0 NA intron (ENSMUSG00000033713.12, intron 1 of 3) protein_coding-intron (ENSMUSG00000033713.12, intron 1 of 2) 2289 ENSMUSG00000033713.12 ENSMUSG00000033713 ENSMUST00000221283 Foxn3 protein_coding Interval_1614 chr1 29985500 29985988 + 0 NA promoter-TSS (ENSMUSG00000096829.1) miRNA-promoter-TSS (ENSMUSG00000096829.1) -190 ENSMUSG00000096829.1 ENSMUSG00000096829 ENSMUST00000178702 Gm23771 miRNA Interval_154767 chr8 23214155 23215419 + 0 NA Intergenic Intergenic 6275 ENSMUSG00000103925.1 ENSMUSG00000103925 ENSMUST00000192979 B230112G18Rik TEC Interval_70149 chr17 5829808 5830069 + 0 NA Intergenic Intergenic -8030 ENSMUSG00000096962.1 ENSMUSG00000096962 ENSMUST00000180520 Gm26622 processed_pseudogene Interval_28974 chr11 79671479 79671956 + 0 NA intron (ENSMUSG00000086569.1, intron 2 of 2) protein_coding-intron (ENSMUSG00000017639.13, intron 3 of 14) 3366 ENSMUSG00000086569.1 ENSMUSG00000086569 ENSMUST00000123067 Rab11fip4os2 antisense Interval_26465 chr11 58008220 58010367 + 0 NA exon (ENSMUSG00000037331.15, exon 1 of 19) protein_coding-exon (ENSMUSG00000037331.15, exon 1 of 19) 229 ENSMUSG00000037331.15 ENSMUSG00000037331 ENSMUST00000140500 Larp1 protein_coding Interval_34288 chr12 3100336 3100556 + 0 NA Intergenic Intergenic 17779 ENSMUSG00000092168.1 ENSMUSG00000092168 ENSMUST00000168738 Gm9075 unprocessed_pseudogene Interval_34546 chr12 5005261 5006461 + 0 NA intron (ENSMUSG00000052812.5, intron 5 of 7) protein_coding-intron (ENSMUSG00000052812.5, intron 21 of 30) -6493 ENSMUSG00000087780.1 ENSMUSG00000087780 ENSMUST00000157155 Gm23167 snRNA Interval_87322 chr19 47668620 47670394 + 0 NA intron (ENSMUSG00000025064.15, intron 2 of 2) protein_coding-intron (ENSMUSG00000025064.15, intron 16 of 53) 6329 ENSMUSG00000025064.15 ENSMUSG00000025064 ENSMUST00000235883 Col17a1 protein_coding Interval_117977 chr4 127425297 127426461 + 0 NA Intergenic Intergenic -17081 ENSMUSG00000079998.2 ENSMUSG00000079998 ENSMUST00000116114 Gm12947 processed_pseudogene Interval_89190 chr2 17954175 17955401 + 0 NA Intergenic Intergenic 42170 ENSMUSG00000062651.4 ENSMUSG00000062651 ENSMUST00000105001 H2al2a protein_coding Interval_54278 chr14 67071646 67073397 + 0 NA promoter-TSS (ENSMUSG00000022052.9) protein_coding-promoter-TSS (ENSMUSG00000022052.9) -2309 ENSMUSG00000098365.1 ENSMUSG00000098365 ENSMUST00000184709 Gm27647 miRNA Interval_94622 chr2 92735004 92736035 + 0 NA Intergenic Intergenic -6711 ENSMUSG00000085976.1 ENSMUSG00000085976 ENSMUST00000152230 Gm13816 lincRNA Interval_154137 chr8 12988849 12989392 + 0 NA TTS (ENSMUSG00000031442.21) protein_coding-TTS (ENSMUSG00000031442.21) -17091 ENSMUSG00000082682.1 ENSMUSG00000082682 ENSMUST00000121154 Gm15349 processed_pseudogene Interval_124633 chr5 52613789 52615941 + 0 NA intron (ENSMUSG00000052295.4, intron 1 of 2) lincRNA-intron (ENSMUSG00000052295.4, intron 1 of 2) 4147 ENSMUSG00000052295.4 ENSMUSG00000052295 ENSMUST00000064097 8030423F21Rik lincRNA Interval_128000 chr5 110176284 110177599 + 0 NA promoter-TSS (ENSMUSG00000029502.14) protein_coding-promoter-TSS (ENSMUSG00000029502.14) 62 ENSMUSG00000029502.14 ENSMUSG00000029502 ENSMUST00000125380 Golga3 protein_coding Interval_4038 chr1 66759953 66760255 + 0 NA intron (ENSMUSG00000026004.15, intron 5 of 13) protein_coding-intron (ENSMUSG00000026004.15, intron 6 of 13) 8627 ENSMUSG00000102559.1 ENSMUSG00000102559 ENSMUST00000195411 Gm37570 TEC Interval_61113 chr15 79308042 79308268 + 0 NA TTS (ENSMUSG00000042632.17) protein_coding-TTS (ENSMUSG00000042632.17) -6041 ENSMUSG00000092494.2 ENSMUSG00000092494 ENSMUST00000173178 Gm20420 antisense Interval_45629 chr13 56356752 56356962 + 0 NA Intergenic Intergenic -6043 ENSMUSG00000074885.4 ENSMUSG00000074885 ENSMUST00000099476 Gm10782 lincRNA Interval_43253 chr13 27514239 27514704 + 0 NA Intergenic Intergenic -1272 ENSMUSG00000021346.14 ENSMUSG00000021346 ENSMUST00000223621 Prl8a8 protein_coding Interval_26626 chr11 59298094 59298383 + 0 NA Intergenic Intergenic -7486 ENSMUSG00000009900.7 ENSMUSG00000009900 ENSMUST00000010044 Wnt3a protein_coding Interval_129065 chr5 117170884 117171088 + 0 NA intron (ENSMUSG00000061288.13, intron 1 of 12) protein_coding-intron (ENSMUSG00000061288.13, intron 1 of 19) -25569 ENSMUSG00000084587.1 ENSMUSG00000084587 ENSMUST00000122638 n-R5s174 rRNA Interval_155579 chr8 34806558 34810031 + 0 NA intron (ENSMUSG00000031530.6, intron 1 of 3) protein_coding-intron (ENSMUSG00000031530.6, intron 1 of 3) 997 ENSMUSG00000031530.6 ENSMUSG00000031530 ENSMUST00000033930 Dusp4 protein_coding Interval_104336 chr3 63587900 63588118 + 0 NA Intergenic Intergenic 99016 ENSMUSG00000088957.1 ENSMUSG00000088957 ENSMUST00000158332 Gm24946 snRNA Interval_119568 chr4 138418043 138418667 + 0 NA Intergenic Intergenic -7433 ENSMUSG00000083326.4 ENSMUSG00000083326 ENSMUST00000117723 Rpl38-ps1 processed_pseudogene Interval_142935 chr6 147083278 147083696 + 0 NA intron (ENSMUSG00000072662.2, intron 1 of 1) protein_coding-intron (ENSMUSG00000072662.2, intron 1 of 2) 3514 ENSMUSG00000072662.2 ENSMUSG00000072662 ENSMUST00000123367 Mansc4 protein_coding Interval_104771 chr3 72691667 72692110 + 0 NA Intergenic Intergenic 46093 ENSMUSG00000084752.1 ENSMUSG00000084752 ENSMUST00000122803 Gm22451 snRNA Interval_137785 chr6 82436991 82437219 + 0 NA intron (ENSMUSG00000030043.11, intron 1 of 4) protein_coding-intron (ENSMUSG00000030043.11, intron 2 of 5) 34771 ENSMUSG00000030043.11 ENSMUSG00000030043 ENSMUST00000203775 Tacr1 protein_coding Interval_165087 chr9 44495255 44495677 + 0 NA intron (ENSMUSG00000063382.6, intron 2 of 9) protein_coding-intron (ENSMUSG00000063382.6, intron 2 of 3) -11663 ENSMUSG00000111312.1 ENSMUSG00000111312 ENSMUST00000215551 Gm47205 TEC Interval_127578 chr5 105518593 105520194 + 0 NA promoter-TSS (ENSMUSG00000054720.12) protein_coding-promoter-TSS (ENSMUSG00000054720.12) -80 ENSMUSG00000054720.12 ENSMUSG00000054720 ENSMUST00000153754 Lrrc8c protein_coding Interval_78720 chr18 19047283 19047978 + 0 NA Intergenic Intergenic -85587 ENSMUSG00000117378.1 ENSMUSG00000117378 ENSMUST00000234128 Gm31086 lincRNA Interval_90013 chr2 27330951 27331805 + 0 NA TTS (ENSMUSG00000086669.1) antisense-TTS (ENSMUSG00000086669.1) 4674 ENSMUSG00000086669.1 ENSMUSG00000086669 ENSMUST00000156020 AA645442 antisense Interval_160620 chr8 111094149 111095295 + 0 NA promoter-TSS (ENSMUSG00000033624.10) protein_coding-promoter-TSS (ENSMUSG00000033624.10) 67 ENSMUSG00000033624.10 ENSMUSG00000033624 ENSMUST00000144377 Pdpr protein_coding Interval_81092 chr18 53823910 53824540 + 0 NA Intergenic Intergenic -37963 ENSMUSG00000073563.3 ENSMUSG00000073563 ENSMUST00000236399 Csnk1g3 protein_coding Interval_83683 chr19 3702364 3702770 + 0 NA intron (ENSMUSG00000118249.1, intron 2 of 2) lincRNA-intron (ENSMUSG00000118249.1, intron 2 of 2) 5609 ENSMUSG00000118249.1 ENSMUSG00000118249 ENSMUST00000236650 Gm36608 lincRNA Interval_115708 chr4 102844469 102844689 + 0 NA intron (ENSMUSG00000028524.21, intron 1 of 4) protein_coding-intron (ENSMUSG00000028524.21, intron 1 of 23) 84114 ENSMUSG00000028524.21 ENSMUSG00000028524 ENSMUST00000140676 Sgip1 protein_coding Interval_28653 chr11 77577564 77578092 + 0 NA intron (ENSMUSG00000017291.13, intron 4 of 19) protein_coding-intron (ENSMUSG00000017291.13, intron 3 of 18) 29987 ENSMUSG00000017291.13 ENSMUSG00000017291 ENSMUST00000058496 Taok1 protein_coding Interval_75202 chr17 64641625 64641832 + 0 NA intron (ENSMUSG00000024085.13, intron 4 of 21) protein_coding-intron (ENSMUSG00000024085.13, intron 4 of 21) -71891 ENSMUSG00000024085.13 ENSMUSG00000024085 ENSMUST00000169668 Man2a1 protein_coding Interval_153097 chr7 141338427 141341092 + 0 NA intron (ENSMUSG00000025504.14, intron 1 of 4) protein_coding-intron (ENSMUSG00000025504.14, intron 1 of 20) 779 ENSMUSG00000025504.14 ENSMUSG00000025504 ENSMUST00000155729 Eps8l2 protein_coding Interval_136720 chr6 58567419 58568195 + 0 NA Intergenic Intergenic -45997 ENSMUSG00000107960.1 ENSMUSG00000107960 ENSMUST00000204999 Gm35077 lincRNA Interval_57772 chr15 19395010 19396566 + 0 NA promoter-TSS (ENSMUSG00000114971.1) lincRNA-promoter-TSS (ENSMUSG00000114971.1) -366 ENSMUSG00000114971.1 ENSMUSG00000114971 ENSMUST00000228706 Gm49162 lincRNA Interval_117838 chr4 126526920 126527410 + 0 NA intron (ENSMUSG00000042500.11, intron 1 of 17) protein_coding-intron (ENSMUSG00000042500.11, intron 1 of 17) -2493 ENSMUSG00000082888.1 ENSMUSG00000082888 ENSMUST00000119221 Gm12934 processed_pseudogene Interval_6774 chr1 119404072 119405511 + 0 NA Intergenic Intergenic 17457 ENSMUSG00000037035.5 ENSMUSG00000037035 ENSMUST00000038765 Inhbb protein_coding Interval_169571 chr9 99211057 99211810 + 0 NA Intergenic Intergenic 9134 ENSMUSG00000101498.1 ENSMUSG00000101498 ENSMUST00000185530 Gm2950 processed_pseudogene Interval_85556 chr19 28530319 28531841 + 0 NA TTS (ENSMUSG00000052942.13) protein_coding-TTS (ENSMUSG00000052942.13) 52214 ENSMUSG00000089952.1 ENSMUSG00000089952 ENSMUST00000162380 4933413C19Rik sense_intronic Interval_79882 chr18 35724698 35724942 + 0 NA intron (ENSMUSG00000073598.3, intron 2 of 2) protein_coding-intron (ENSMUSG00000073598.3, intron 2 of 2) -2513 ENSMUSG00000073599.10 ENSMUSG00000073599 ENSMUST00000143684 Ecscr protein_coding Interval_151068 chr7 118279325 118280264 + 0 NA promoter-TSS (ENSMUSG00000087922.1) snRNA-promoter-TSS (ENSMUSG00000087922.1) -67 ENSMUSG00000087922.1 ENSMUSG00000087922 ENSMUST00000157297 Gm23229 snRNA Interval_101120 chr2 178118025 178119773 + 0 NA promoter-TSS (ENSMUSG00000027525.18) protein_coding-promoter-TSS (ENSMUSG00000027525.18) -40474 ENSMUSG00000078861.8 ENSMUSG00000078861 ENSMUST00000108923 Zfp931 protein_coding Interval_7947 chr1 134719903 134720115 + 0 NA intron (ENSMUSG00000026452.15, intron 1 of 8) protein_coding-intron (ENSMUSG00000026452.15, intron 1 of 8) 73328 ENSMUSG00000026452.15 ENSMUSG00000026452 ENSMUST00000187702 Syt2 protein_coding Interval_23142 chr11 20152108 20154188 + 0 NA Intergenic Intergenic -6804 ENSMUSG00000085035.1 ENSMUSG00000085035 ENSMUST00000156150 Gm12031 lincRNA Interval_8256 chr1 136758444 136759722 + 0 NA Intergenic Intergenic -1474 ENSMUSG00000096432.1 ENSMUSG00000096432 ENSMUST00000175316 Gm22132 miRNA Interval_62967 chr15 98315908 98316337 + 0 NA intron (ENSMUSG00000062037.3, intron 1 of 1) protein_coding-intron (ENSMUSG00000062037.3, intron 1 of 1) 1231 ENSMUSG00000062037.3 ENSMUSG00000062037 ENSMUST00000079736 Olfr285 protein_coding Interval_169629 chr9 99552124 99552900 + 0 NA intron (ENSMUSG00000032468.11, intron 1 of 1) protein_coding-intron (ENSMUSG00000032468.11, intron 1 of 21) 16151 ENSMUSG00000032468.11 ENSMUSG00000032468 ENSMUST00000191370 Armc8 protein_coding Interval_5925 chr1 93260026 93260385 + 0 NA intron (ENSMUSG00000047793.13, intron 4 of 22) protein_coding-intron (ENSMUSG00000047793.13, intron 4 of 30) -14344 ENSMUSG00000098997.1 ENSMUSG00000098997 ENSMUST00000185062 Mir6901 miRNA Interval_97608 chr2 140462185 140462460 + 0 NA intron (ENSMUSG00000068205.14, intron 3 of 3) protein_coding-intron (ENSMUSG00000068205.14, intron 3 of 17) -21675 ENSMUSG00000065769.1 ENSMUSG00000065769 ENSMUST00000083835 Gm23846 snRNA Interval_134938 chr6 33946075 33946687 + 0 NA intron (ENSMUSG00000029763.17, intron 17 of 17) protein_coding-intron (ENSMUSG00000029763.17, intron 17 of 17) 46030 ENSMUSG00000087441.1 ENSMUSG00000087441 ENSMUST00000155496 Gm13853 lincRNA Interval_27516 chr11 68354790 68355442 + 0 NA intron (ENSMUSG00000020902.12, intron 3 of 7) protein_coding-intron (ENSMUSG00000020902.12, intron 2 of 6) 31896 ENSMUSG00000020902.12 ENSMUSG00000020902 ENSMUST00000135141 Ntn1 protein_coding Interval_131425 chr5 137106976 137107325 + 0 NA exon (ENSMUSG00000043279.9, exon 3 of 3) protein_coding-exon (ENSMUSG00000043279.9, exon 3 of 3) 9059 ENSMUSG00000043279.9 ENSMUSG00000043279 ENSMUST00000152207 Trim56 protein_coding Interval_125471 chr5 67416862 67417517 + 0 NA intron (ENSMUSG00000092060.4, intron 2 of 4) protein_coding-intron (ENSMUSG00000092060.4, intron 2 of 4) 10428 ENSMUSG00000092060.4 ENSMUSG00000092060 ENSMUST00000201972 Bend4 protein_coding Interval_105255 chr3 84259122 84260412 + 0 NA promoter-TSS (ENSMUSG00000027993.16) protein_coding-promoter-TSS (ENSMUSG00000027993.16) 47110 ENSMUSG00000027993.16 ENSMUSG00000027993 ENSMUST00000197845 Trim2 protein_coding Interval_153402 chr7 144432836 144433245 + 0 NA Intergenic Intergenic 16734 ENSMUSG00000031078.15 ENSMUSG00000031078 ENSMUST00000148778 Cttn protein_coding Interval_8603 chr1 143738993 143740378 + 0 NA promoter-TSS (ENSMUSG00000018196.18) protein_coding-promoter-TSS (ENSMUSG00000018196.18) -3730 ENSMUSG00000018196.18 ENSMUSG00000018196 ENSMUST00000152435 Glrx2 protein_coding Interval_90023 chr2 27384211 27384385 + 0 NA intron (ENSMUSG00000009621.18, intron 1 of 29) protein_coding-intron (ENSMUSG00000009621.18, intron 2 of 27) -17554 ENSMUSG00000076364.1 ENSMUSG00000076364 ENSMUST00000102409 Gm24049 miRNA Interval_57379 chr15 10425668 10426148 + 0 NA Intergenic Intergenic 26002 ENSMUSG00000044224.16 ENSMUSG00000044224 ENSMUST00000147224 Dnajc21 protein_coding Interval_41114 chr12 111267717 111268279 + 0 NA TTS (ENSMUSG00000021277.16) protein_coding-TTS (ENSMUSG00000021277.16) -6516 ENSMUSG00000021278.7 ENSMUSG00000021278 ENSMUST00000220551 Amn protein_coding Interval_108739 chr3 130887892 130888475 + 0 NA intron (ENSMUSG00000106095.2, intron 1 of 2) lincRNA-intron (ENSMUSG00000106095.2, intron 1 of 2) 3332 ENSMUSG00000105628.1 ENSMUSG00000105628 ENSMUST00000196382 Gm43350 TEC Interval_140554 chr6 119478747 119481022 + 0 NA exon (ENSMUSG00000030019.6, exon 1 of 1) protein_coding-exon (ENSMUSG00000030019.6, exon 1 of 1) 216 ENSMUSG00000030019.6 ENSMUSG00000030019 ENSMUST00000032094 Fbxl14 protein_coding Interval_139370 chr6 99550882 99551089 + 0 NA intron (ENSMUSG00000030068.4, intron 1 of 1) protein_coding-intron (ENSMUSG00000030068.4, intron 3 of 5) -24906 ENSMUSG00000084547.1 ENSMUSG00000084547 ENSMUST00000122598 Gm24936 misc_RNA Interval_152662 chr7 135852360 135853846 + 0 NA promoter-TSS (ENSMUSG00000109898.1) lincRNA-promoter-TSS (ENSMUSG00000109898.1) -579 ENSMUSG00000109898.1 ENSMUSG00000109898 ENSMUST00000211371 6330420H09Rik lincRNA Interval_38758 chr12 81974383 81974689 + 0 NA TTS (ENSMUSG00000021140.9) protein_coding-TTS (ENSMUSG00000021140.9) 1349 ENSMUSG00000021140.9 ENSMUSG00000021140 ENSMUST00000222468 Pcnx protein_coding Interval_169397 chr9 96935562 96936184 + 0 NA Intergenic Intergenic 30366 ENSMUSG00000101209.1 ENSMUSG00000101209 ENSMUST00000186232 Gm8524 processed_pseudogene Interval_122125 chr5 17621190 17621569 + 0 NA intron (ENSMUSG00000028780.13, intron 2 of 7) protein_coding-intron (ENSMUSG00000028780.13, intron 2 of 17) 46613 ENSMUSG00000028780.13 ENSMUSG00000028780 ENSMUST00000115271 Sema3c protein_coding Interval_71204 chr17 21117632 21118342 + 0 NA Intergenic Intergenic -11364 ENSMUSG00000096857.1 ENSMUSG00000096857 ENSMUST00000170486 Gm7732 processed_pseudogene Interval_169576 chr9 99231329 99231574 + 0 NA intron (ENSMUSG00000096316.7, intron 3 of 3) protein_coding-intron (ENSMUSG00000096316.7, intron 4 of 4) 4919 ENSMUSG00000096316.7 ENSMUSG00000096316 ENSMUST00000188555 Faiml protein_coding Interval_43075 chr13 23611549 23611811 + 0 NA intron (ENSMUSG00000047246.7, intron 1 of 1) protein_coding-intron (ENSMUSG00000047246.7, intron 1 of 1) 9369 ENSMUSG00000080741.3 ENSMUSG00000080741 ENSMUST00000120330 Gm11398 transcribed_unprocessed_pseudogene Interval_87507 chr19 53111919 53113111 + 0 NA Intergenic Intergenic -16169 ENSMUSG00000118233.1 ENSMUSG00000118233 ENSMUST00000236104 Gm30381 lincRNA Interval_53604 chr14 59810340 59810839 + 0 NA intron (ENSMUSG00000021983.16, intron 26 of 35) protein_coding-intron (ENSMUSG00000021983.16, intron 26 of 35) 168041 ENSMUSG00000114593.1 ENSMUSG00000114593 ENSMUST00000224256 Gm19716 transcribed_processed_pseudogene Interval_36583 chr12 50947720 50948027 + 0 NA Intergenic Intergenic -52402 ENSMUSG00000112154.1 ENSMUSG00000112154 ENSMUST00000220100 Gm48777 processed_pseudogene Interval_127742 chr5 107268185 107269203 + 0 NA intron (ENSMUSG00000029287.14, intron 1 of 6) protein_coding-intron (ENSMUSG00000029287.14, intron 1 of 16) -12190 ENSMUSG00000106671.1 ENSMUSG00000106671 ENSMUST00000197184 Gm42900 TEC Interval_40792 chr12 108453590 108454274 + 0 NA intron (ENSMUSG00000058070.14, intron 1 of 20) protein_coding-intron (ENSMUSG00000058070.14, intron 1 of 21) -12662 ENSMUSG00000082203.1 ENSMUSG00000082203 ENSMUST00000119205 Gm15636 processed_pseudogene Interval_12060 chr1 189250002 189250742 + 0 NA intron (ENSMUSG00000037624.15, intron 4 of 5) protein_coding-intron (ENSMUSG00000037624.15, intron 5 of 6) 27451 ENSMUSG00000102824.1 ENSMUSG00000102824 ENSMUST00000191699 Pdcd5-ps processed_pseudogene Interval_122860 chr5 26395727 26396013 + 0 NA Intergenic Intergenic 40452 ENSMUSG00000105786.1 ENSMUSG00000105786 ENSMUST00000197623 Gm18957 processed_pseudogene Interval_16322 chr10 62217138 62219048 + 0 NA intron (ENSMUSG00000037031.10, intron 1 of 7) protein_coding-intron (ENSMUSG00000037031.10, intron 1 of 7) -16316 ENSMUSG00000037031.10 ENSMUSG00000037031 ENSMUST00000220143 Tspan15 protein_coding Interval_35747 chr12 28823561 28823777 + 0 NA intron (ENSMUSG00000036613.8, intron 4 of 9) protein_coding-intron (ENSMUSG00000036613.8, intron 4 of 9) 13531 ENSMUSG00000113886.1 ENSMUSG00000113886 ENSMUST00000222829 Gm48905 sense_intronic Interval_21194 chr10 127141128 127142019 + 0 NA Intergenic Intergenic -2956 ENSMUSG00000088672.1 ENSMUSG00000088672 ENSMUST00000158047 Gm23664 snRNA Interval_72010 chr17 27571208 27571754 + 0 NA Intergenic Intergenic -5815 ENSMUSG00000062753.14 ENSMUSG00000062753 ENSMUST00000138728 AI413582 protein_coding Interval_119378 chr4 137327758 137329185 + 0 NA intron (ENSMUSG00000006699.17, intron 5 of 5) protein_coding-intron (ENSMUSG00000006699.17, intron 5 of 5) 2912 ENSMUSG00000089199.1 ENSMUSG00000089199 ENSMUST00000158574 Gm25772 snRNA Interval_118368 chr4 130941777 130942480 + 0 NA Intergenic Intergenic -2257 ENSMUSG00000040533.7 ENSMUSG00000040533 ENSMUST00000102576 Matn1 protein_coding Interval_68840 chr16 87507054 87507983 + 0 NA Intergenic Intergenic 11519 ENSMUSG00000093606.1 ENSMUSG00000093606 ENSMUST00000175717 B130034C11Rik processed_transcript Interval_68486 chr16 78096185 78096767 + 0 NA Intergenic Intergenic -20624 ENSMUSG00000116609.1 ENSMUSG00000116609 ENSMUST00000231333 Gm5675 processed_pseudogene Interval_134142 chr6 21800573 21800791 + 0 NA intron (ENSMUSG00000029669.14, intron 5 of 5) protein_coding-intron (ENSMUSG00000029669.14, intron 6 of 8) 51146 ENSMUSG00000029669.14 ENSMUSG00000029669 ENSMUST00000202353 Tspan12 protein_coding Interval_82997 chr18 80255202 80257146 + 0 NA promoter-TSS (ENSMUSG00000034006.17) protein_coding-promoter-TSS (ENSMUSG00000034006.17) 2832 ENSMUSG00000034006.17 ENSMUSG00000034006 ENSMUST00000155039 Slc66a2 protein_coding Interval_19446 chr10 99353227 99354487 + 0 NA exon (ENSMUSG00000044633.4, exon 4 of 4) lincRNA-exon (ENSMUSG00000044633.4, exon 4 of 4) 54691 ENSMUSG00000044633.4 ENSMUSG00000044633 ENSMUST00000060657 B530045E10Rik lincRNA Interval_119838 chr4 140385378 140386355 + 0 NA TTS (ENSMUSG00000087084.1) lincRNA-TTS (ENSMUSG00000087084.1) 5236 ENSMUSG00000087084.1 ENSMUSG00000087084 ENSMUST00000126252 Gm13016 lincRNA Interval_1519 chr1 24648013 24648994 + 0 NA Intergenic Intergenic -30127 ENSMUSG00000073725.8 ENSMUSG00000073725 ENSMUST00000190195 Lmbrd1 protein_coding Interval_101036 chr2 174422367 174423100 + 0 NA promoter-TSS (ENSMUSG00000016253.12) protein_coding-promoter-TSS (ENSMUSG00000016253.12) -659 ENSMUSG00000016253.12 ENSMUSG00000016253 ENSMUST00000137986 Nelfcd protein_coding Interval_81462 chr18 60903004 60903312 + 0 NA Intergenic Intergenic -8622 ENSMUSG00000036412.5 ENSMUSG00000036412 ENSMUST00000040359 Arsi protein_coding Interval_146932 chr7 55986544 55987365 + 0 NA intron (ENSMUSG00000047037.5, intron 3 of 4) protein_coding-intron (ENSMUSG00000047037.5, intron 3 of 4) 7027 ENSMUSG00000085927.1 ENSMUSG00000085927 ENSMUST00000154016 Gm15888 processed_transcript Interval_109133 chr3 136516560 136517140 + 0 NA Intergenic Intergenic -67501 ENSMUSG00000099508.1 ENSMUSG00000099508 ENSMUST00000189233 1700030L20Rik lincRNA Interval_97183 chr2 132107915 132108140 + 0 NA intron (ENSMUSG00000027340.15, intron 1 of 6) protein_coding-intron (ENSMUSG00000027340.15, intron 1 of 15) 8158 ENSMUSG00000082990.1 ENSMUSG00000082990 ENSMUST00000121434 Gm14052 processed_pseudogene Interval_133466 chr6 5400763 5401894 + 0 NA intron (ENSMUSG00000042607.15, intron 3 of 3) protein_coding-intron (ENSMUSG00000042607.15, intron 3 of 5) 10901 ENSMUSG00000042607.15 ENSMUSG00000042607 ENSMUST00000183358 Asb4 protein_coding Interval_139172 chr6 96843831 96844753 + 0 NA intron (ENSMUSG00000046500.8, intron 4 of 5) protein_coding-intron (ENSMUSG00000046500.8, intron 4 of 5) 216101 ENSMUSG00000046500.8 ENSMUSG00000046500 ENSMUST00000203930 Tafa4 protein_coding Interval_120128 chr4 142727056 142727327 + 0 NA intron (ENSMUSG00000110067.2, intron 2 of 2) protein_coding-intron (ENSMUSG00000110067.2, intron 2 of 2) -63617 ENSMUSG00000103678.1 ENSMUSG00000103678 ENSMUST00000193751 Gm37624 TEC Interval_165704 chr9 51167562 51168074 + 0 NA Intergenic Intergenic -2301 ENSMUSG00000110266.1 ENSMUSG00000110266 ENSMUST00000210433 Gm32742 protein_coding Interval_81493 chr18 61145341 61145665 + 0 NA intron (ENSMUSG00000024622.8, intron 13 of 17) protein_coding-intron (ENSMUSG00000024622.8, intron 14 of 20) -6890 ENSMUSG00000089125.1 ENSMUSG00000089125 ENSMUST00000158500 Gm26403 snRNA Interval_152527 chr7 133862942 133863601 + 0 NA intron (ENSMUSG00000053111.13, intron 3 of 4) protein_coding-intron (ENSMUSG00000053111.13, intron 3 of 10) 73786 ENSMUSG00000053111.13 ENSMUSG00000053111 ENSMUST00000211077 Fank1 protein_coding Interval_55120 chr14 78275671 78277094 + 0 NA Intergenic Intergenic -30071 ENSMUSG00000080402.1 ENSMUSG00000080402 ENSMUST00000116752 Gm23652 miRNA Interval_52229 chr14 40890055 40890351 + 0 NA intron (ENSMUSG00000037833.14, intron 1 of 3) protein_coding-intron (ENSMUSG00000037833.14, intron 1 of 7) 3063 ENSMUSG00000037833.14 ENSMUSG00000037833 ENSMUST00000225854 Sh2d4b protein_coding Interval_169033 chr9 90651893 90652249 + 0 NA Intergenic Intergenic 81453 ENSMUSG00000099366.1 ENSMUSG00000099366 ENSMUST00000189539 Gm2497 processed_pseudogene Interval_103468 chr3 41891003 41891544 + 0 NA Intergenic Intergenic -85062 ENSMUSG00000102972.1 ENSMUSG00000102972 ENSMUST00000193104 Gm37348 processed_pseudogene Interval_58723 chr15 37344268 37345183 + 0 NA exon (ENSMUSG00000022286.16, exon 13 of 16) protein_coding-exon (ENSMUSG00000022286.16, exon 13 of 16) -11916 ENSMUSG00000089811.2 ENSMUSG00000089811 ENSMUST00000159341 Gm16138 processed_pseudogene Interval_7649 chr1 132809690 132810588 + 0 NA Intergenic Intergenic 4209 ENSMUSG00000088911.1 ENSMUSG00000088911 ENSMUST00000158286 Gm22609 snoRNA Interval_36116 chr12 36001564 36001993 + 0 NA intron (ENSMUSG00000020581.11, intron 7 of 7) protein_coding-intron (ENSMUSG00000020581.11, intron 7 of 7) 8871 ENSMUSG00000020581.11 ENSMUSG00000020581 ENSMUST00000020898 Agr2 protein_coding Interval_16378 chr10 62590015 62590912 + 0 NA promoter-TSS (ENSMUSG00000020075.8) protein_coding-promoter-TSS (ENSMUSG00000020075.8) 508 ENSMUSG00000020075.8 ENSMUSG00000020075 ENSMUST00000220060 Ddx21 protein_coding Interval_125551 chr5 70284661 70284980 + 0 NA Intergenic Intergenic -97974 ENSMUSG00000088863.1 ENSMUSG00000088863 ENSMUST00000158238 Gm23067 snRNA Interval_23163 chr11 20244560 20245101 + 0 NA intron (ENSMUSG00000044066.14, intron 1 of 2) protein_coding-intron (ENSMUSG00000044066.14, intron 1 of 6) 4599 ENSMUSG00000044066.14 ENSMUSG00000044066 ENSMUST00000161218 Cep68 protein_coding Interval_19012 chr10 93794716 93795911 + 0 NA Intergenic Intergenic -11985 ENSMUSG00000096598.1 ENSMUSG00000096598 ENSMUST00000178842 Gm26239 snRNA Interval_63051 chr15 98839185 98841193 + 0 NA exon (ENSMUSG00000048154.17, exon 49 of 55) protein_coding-exon (ENSMUSG00000048154.17, exon 49 of 55) 9048 ENSMUSG00000048154.17 ENSMUSG00000048154 ENSMUST00000184363 Kmt2d protein_coding Interval_82923 chr18 79256683 79258090 + 0 NA Intergenic Intergenic 47776 ENSMUSG00000117828.1 ENSMUSG00000117828 ENSMUST00000236697 Gm2116 processed_pseudogene Interval_68388 chr16 75487838 75488154 + 0 NA Intergenic Intergenic -40703 ENSMUSG00000116610.1 ENSMUSG00000116610 ENSMUST00000232503 Gm49678 lincRNA Interval_161359 chr8 119938298 119939460 + 0 NA exon (ENSMUSG00000031826.20, exon 1 of 1) protein_coding-exon (ENSMUSG00000031826.20, exon 1 of 1) -7521 ENSMUSG00000031826.20 ENSMUSG00000031826 ENSMUST00000139648 Usp10 protein_coding Interval_136398 chr6 54104624 54106299 + 0 NA intron (ENSMUSG00000004633.17, intron 1 of 5) protein_coding-intron (ENSMUSG00000004633.17, intron 1 of 12) 45476 ENSMUSG00000087670.1 ENSMUSG00000087670 ENSMUST00000138767 9530036M11Rik antisense Interval_65093 chr16 19002704 19003683 + 0 NA Intergenic Intergenic 15509 ENSMUSG00000105028.1 ENSMUSG00000105028 ENSMUST00000198129 Gm18747 processed_pseudogene Interval_60744 chr15 76489030 76489329 + 0 NA intron (ENSMUSG00000022556.11, intron 1 of 3) protein_coding-intron (ENSMUSG00000022556.11, intron 1 of 11) -10468 ENSMUSG00000022556.11 ENSMUSG00000022556 ENSMUST00000228688 Hsf1 protein_coding Interval_74459 chr17 50926684 50926898 + 0 NA intron (ENSMUSG00000023923.10, intron 9 of 16) protein_coding-intron (ENSMUSG00000023923.10, intron 9 of 21) -9750 ENSMUSG00000084583.1 ENSMUSG00000084583 ENSMUST00000122634 Gm25177 snRNA Interval_43080 chr13 23709464 23711111 + 0 NA intron (ENSMUSG00000006611.15, intron 1 of 5) protein_coding-intron (ENSMUSG00000006611.15, intron 1 of 3) -4599 ENSMUSG00000006611.15 ENSMUSG00000006611 ENSMUST00000006787 Hfe protein_coding Interval_168171 chr9 77744761 77745132 + 0 NA Intergenic Intergenic -11678 ENSMUSG00000111014.1 ENSMUSG00000111014 ENSMUST00000215539 Gm47795 lincRNA Interval_99144 chr2 157464456 157465662 + 0 NA intron (ENSMUSG00000027646.15, intron 8 of 13) protein_coding-intron (ENSMUSG00000027646.15, intron 8 of 13) 40943 ENSMUSG00000027646.15 ENSMUSG00000027646 ENSMUST00000109529 Src protein_coding Interval_105264 chr3 84337621 84338399 + 0 NA Intergenic Intergenic -31133 ENSMUSG00000027993.16 ENSMUSG00000027993 ENSMUST00000197845 Trim2 protein_coding Interval_163017 chr9 14564541 14565211 + 0 NA intron (ENSMUSG00000013076.17, intron 7 of 13) protein_coding-intron (ENSMUSG00000013076.17, intron 6 of 12) -39115 ENSMUSG00000111612.1 ENSMUSG00000111612 ENSMUST00000213361 Gm47090 processed_pseudogene Interval_157985 chr8 77565738 77565987 + 0 NA TTS (ENSMUSG00000037134.17) protein_coding-TTS (ENSMUSG00000037134.17) 3740 ENSMUSG00000087750.1 ENSMUSG00000087750 ENSMUST00000157125 Gm23468 snRNA Interval_139541 chr6 100876047 100876345 + 0 NA Intergenic Intergenic 23711 ENSMUSG00000052144.8 ENSMUSG00000052144 ENSMUST00000203067 Ppp4r2 protein_coding Interval_108224 chr3 122607926 122608114 + 0 NA intron (ENSMUSG00000039735.16, intron 1 of 14) protein_coding-intron (ENSMUSG00000039735.16, intron 1 of 13) 11695 ENSMUSG00000039735.16 ENSMUSG00000039735 ENSMUST00000162884 Fnbp1l protein_coding Interval_53114 chr14 54527606 54529051 + 0 NA Intergenic Intergenic -10935 ENSMUSG00000023110.12 ENSMUSG00000023110 ENSMUST00000132801 Prmt5 protein_coding Interval_169447 chr9 97414165 97415625 + 0 NA Intergenic Intergenic 24732 ENSMUSG00000077208.1 ENSMUSG00000077208 ENSMUST00000104020 Gm25607 snoRNA Interval_82368 chr18 73171428 73171621 + 0 NA Intergenic Intergenic -250434 ENSMUSG00000118316.1 ENSMUSG00000118316 ENSMUST00000236243 Gm31908 lincRNA Interval_116212 chr4 108737879 108739149 + 0 NA intron (ENSMUSG00000034557.14, intron 1 of 17) protein_coding-intron (ENSMUSG00000034557.14, intron 1 of 18) 6772 ENSMUSG00000082374.1 ENSMUSG00000082374 ENSMUST00000118836 Gm12741 processed_pseudogene Interval_88859 chr2 11710365 11710634 + 0 NA intron (ENSMUSG00000023206.16, intron 1 of 2) protein_coding-intron (ENSMUSG00000023206.16, intron 1 of 6) 5112 ENSMUSG00000023206.16 ENSMUSG00000023206 ENSMUST00000139774 Il15ra protein_coding Interval_34006 chr11 119951589 119951796 + 0 NA intron (ENSMUSG00000025372.16, intron 1 of 4) protein_coding-intron (ENSMUSG00000025372.16, intron 1 of 13) 8576 ENSMUSG00000025372.16 ENSMUSG00000025372 ENSMUST00000131580 Baiap2 protein_coding Interval_134999 chr6 34441687 34442330 + 0 NA exon (ENSMUSG00000084965.1, exon 3 of 4) transcribed_processed_pseudogene-exon (ENSMUSG00000084965.1, exon 3 of 4) 1106 ENSMUSG00000084965.1 ENSMUSG00000084965 ENSMUST00000141091 Gm13857 transcribed_processed_pseudogene Interval_94251 chr2 86464592 86465119 + 0 NA intron (ENSMUSG00000080752.2, intron 1 of 1) unprocessed_pseudogene-intron (ENSMUSG00000080752.2, intron 1 of 1) 220 ENSMUSG00000080752.2 ENSMUSG00000080752 ENSMUST00000120755 Olfr1069-ps1 unprocessed_pseudogene Interval_153797 chr8 8681145 8681391 + 0 NA intron (ENSMUSG00000040459.11, intron 2 of 2) protein_coding-intron (ENSMUSG00000040459.11, intron 3 of 3) 8836 ENSMUSG00000040459.11 ENSMUSG00000040459 ENSMUST00000207070 Arglu1 protein_coding Interval_142102 chr6 137154878 137155700 + 0 NA intron (ENSMUSG00000030222.13, intron 2 of 2) protein_coding-intron (ENSMUSG00000030222.13, intron 2 of 4) -8360 ENSMUSG00000107567.1 ENSMUSG00000107567 ENSMUST00000203679 4930480K02Rik TEC Interval_27874 chr11 70557361 70557552 + 0 NA TTS (ENSMUSG00000020828.13) protein_coding-TTS (ENSMUSG00000020828.13) 3496 ENSMUSG00000020828.13 ENSMUSG00000020828 ENSMUST00000146248 Pld2 protein_coding Interval_113646 chr4 57239212 57241206 + 0 NA intron (ENSMUSG00000038764.14, intron 11 of 25) protein_coding-intron (ENSMUSG00000038764.14, intron 11 of 25) -59887 ENSMUSG00000085654.1 ENSMUSG00000085654 ENSMUST00000129102 Gm12536 lincRNA Interval_148939 chr7 90190304 90190578 + 0 NA intron (ENSMUSG00000039361.11, intron 1 of 4) protein_coding-intron (ENSMUSG00000039361.11, intron 14 of 20) 4514 ENSMUSG00000109005.1 ENSMUSG00000109005 ENSMUST00000207822 Gm45221 TEC Interval_98960 chr2 156343411 156346072 + 0 NA intron (ENSMUSG00000038085.13, intron 8 of 12) protein_coding-intron (ENSMUSG00000038085.13, intron 8 of 12) 3099 ENSMUSG00000082321.3 ENSMUSG00000082321 ENSMUST00000122112 Gm14253 processed_pseudogene Interval_16809 chr10 68271258 68271464 + 0 NA intron (ENSMUSG00000019947.10, intron 2 of 9) protein_coding-intron (ENSMUSG00000019947.10, intron 2 of 10) 7379 ENSMUSG00000019947.10 ENSMUSG00000019947 ENSMUST00000218425 Arid5b protein_coding Interval_19564 chr10 103332876 103333646 + 0 NA Intergenic Intergenic -60189 ENSMUSG00000019894.14 ENSMUSG00000019894 ENSMUST00000219936 Slc6a15 protein_coding Interval_119889 chr4 140699594 140700157 + 0 NA promoter-TSS (ENSMUSG00000040945.13) protein_coding-promoter-TSS (ENSMUSG00000040945.13) -1598 ENSMUSG00000040945.13 ENSMUSG00000040945 ENSMUST00000129838 Rcc2 protein_coding Interval_100219 chr2 167730626 167731061 + 0 NA Intergenic Intergenic 39666 ENSMUSG00000006462.6 ENSMUSG00000006462 ENSMUST00000130679 A530013C23Rik lincRNA Interval_54296 chr14 67236794 67237019 + 0 NA TTS (ENSMUSG00000022053.13) protein_coding-TTS (ENSMUSG00000022053.13) 3303 ENSMUSG00000022053.13 ENSMUSG00000022053 ENSMUST00000176029 Ebf2 protein_coding Interval_6775 chr1 119410717 119411207 + 0 NA Intergenic Intergenic 11286 ENSMUSG00000037035.5 ENSMUSG00000037035 ENSMUST00000038765 Inhbb protein_coding Interval_163427 chr9 21395655 21396298 + 0 NA TTS (ENSMUSG00000032178.14) protein_coding-TTS (ENSMUSG00000032178.14) 7424 ENSMUSG00000032178.14 ENSMUSG00000032178 ENSMUST00000214200 Ilf3 protein_coding Interval_61043 chr15 78927860 78928418 + 0 NA intron (ENSMUSG00000068220.6, intron 2 of 3) protein_coding-intron (ENSMUSG00000068220.6, intron 2 of 3) 1413 ENSMUSG00000068220.6 ENSMUSG00000068220 ENSMUST00000229159 Lgals1 protein_coding Interval_128013 chr5 110284436 110284754 + 0 NA intron (ENSMUSG00000029499.11, intron 1 of 3) protein_coding-intron (ENSMUSG00000029499.11, intron 1 of 4) 1426 ENSMUSG00000029499.11 ENSMUSG00000029499 ENSMUST00000126882 Pxmp2 protein_coding Interval_57671 chr15 14675626 14675950 + 0 NA Intergenic Intergenic 59496 ENSMUSG00000092919.2 ENSMUSG00000092919 ENSMUST00000175178 Gm24080 miRNA Interval_55087 chr14 77874369 77875265 + 0 NA exon (ENSMUSG00000022013.4, exon 1 of 5) protein_coding-exon (ENSMUSG00000022013.4, exon 1 of 5) -29590 ENSMUSG00000022014.15 ENSMUSG00000022014 ENSMUST00000227903 Epsti1 protein_coding Interval_50220 chr14 10497032 10497560 + 0 NA intron (ENSMUSG00000060579.13, intron 3 of 4) protein_coding-intron (ENSMUSG00000060579.13, intron 4 of 9) 18622 ENSMUSG00000065328.1 ENSMUSG00000065328 ENSMUST00000083394 Gm22053 snoRNA Interval_170686 chr9 110087584 110088400 + 0 NA promoter-TSS (ENSMUSG00000032480.17) protein_coding-promoter-TSS (ENSMUSG00000032480.17) -2477 ENSMUSG00000032480.17 ENSMUSG00000032480 ENSMUST00000197979 Dhx30 protein_coding Interval_58261 chr15 31454768 31455050 + 0 NA TTS (ENSMUSG00000039100.10) protein_coding-TTS (ENSMUSG00000039100.10) 1171 ENSMUSG00000115710.1 ENSMUSG00000115710 ENSMUST00000228386 Gm49208 bidirectional_promoter_lncRNA Interval_17818 chr10 80255575 80255844 + 0 NA TTS (ENSMUSG00000020153.14) protein_coding-TTS (ENSMUSG00000020153.14) 5209 ENSMUSG00000020150.13 ENSMUSG00000020150 ENSMUST00000144798 Gamt protein_coding Interval_41500 chr12 115335232 115335456 + 0 NA exon (ENSMUSG00000095197.6, exon 2 of 2) IG_V_gene-exon (ENSMUSG00000095197.6, exon 2 of 2) 170 ENSMUSG00000095197.6 ENSMUSG00000095197 ENSMUST00000103530 Ighv1-59 IG_V_gene Interval_44104 chr13 40907997 40908350 + 0 NA intron (ENSMUSG00000114662.1, intron 1 of 1) protein_coding-intron (ENSMUSG00000021360.16, intron 1 of 2) 4034 ENSMUSG00000114601.1 ENSMUSG00000114601 ENSMUST00000225964 Gm48188 processed_pseudogene Interval_136806 chr6 60619259 60620229 + 0 NA Intergenic Intergenic 32966 ENSMUSG00000108003.1 ENSMUSG00000108003 ENSMUST00000204603 Gm35386 lincRNA Interval_74049 chr17 46265842 46267630 + 0 NA intron (ENSMUSG00000012296.16, intron 1 of 4) protein_coding-intron (ENSMUSG00000012296.16, intron 2 of 9) 13205 ENSMUSG00000071073.5 ENSMUSG00000071073 ENSMUST00000095262 Lrrc73 protein_coding Interval_35162 chr12 17702660 17703595 + 0 NA intron (ENSMUSG00000071379.2, intron 1 of 3) protein_coding-intron (ENSMUSG00000071379.2, intron 1 of 3) -25099 ENSMUSG00000071379.2 ENSMUSG00000071379 ENSMUST00000222944 Hpcal1 protein_coding Interval_64142 chr16 8697834 8698145 + 0 NA promoter-TSS (ENSMUSG00000022710.17) protein_coding-promoter-TSS (ENSMUSG00000022710.17) 543 ENSMUSG00000022710.17 ENSMUSG00000022710 ENSMUST00000159509 Usp7 protein_coding Interval_74148 chr17 46801368 46802190 + 0 NA exon (ENSMUSG00000036568.7, exon 11 of 11) protein_coding-exon (ENSMUSG00000036568.7, exon 11 of 11) -19142 ENSMUSG00000063888.7 ENSMUSG00000063888 ENSMUST00000233919 Rpl7l1 protein_coding Interval_162362 chr8 127425853 127426122 + 0 NA intron (ENSMUSG00000025812.18, intron 2 of 4) protein_coding-intron (ENSMUSG00000025812.18, intron 18 of 23) -135448 ENSMUSG00000090074.1 ENSMUSG00000090074 ENSMUST00000161478 Gm6921 processed_pseudogene Interval_69715 chr16 95741280 95742297 + 0 NA Intergenic Intergenic -12512 ENSMUSG00000117167.1 ENSMUSG00000117167 ENSMUST00000233819 Gm6599 processed_pseudogene Interval_2978 chr1 51835656 51835883 + 0 NA intron (ENSMUSG00000018417.14, intron 3 of 6) protein_coding-intron (ENSMUSG00000018417.14, intron 3 of 30) 13349 ENSMUSG00000101724.1 ENSMUSG00000101724 ENSMUST00000186428 Gm29453 sense_intronic Interval_75218 chr17 64792861 64793813 + 0 NA Intergenic Intergenic 26226 ENSMUSG00000117105.1 ENSMUSG00000117105 ENSMUST00000233348 Dreh lincRNA Interval_49987 chr13 119347592 119347866 + 0 NA intron (ENSMUSG00000116207.1, intron 14 of 16) protein_coding-intron (ENSMUSG00000025453.18, intron 12 of 14) 61223 ENSMUSG00000116207.1 ENSMUSG00000116207 ENSMUST00000223268 Nnt protein_coding Interval_98088 chr2 147832453 147833362 + 0 NA Intergenic Intergenic 41971 ENSMUSG00000065791.1 ENSMUSG00000065791 ENSMUST00000083857 Gm25516 snRNA Interval_105237 chr3 84076754 84077140 + 0 NA Intergenic Intergenic -13495 ENSMUSG00000103261.1 ENSMUSG00000103261 ENSMUST00000192340 Gm36981 TEC Interval_163036 chr9 14715592 14716034 + 0 NA exon (ENSMUSG00000036912.18, exon 2 of 11) protein_coding-exon (ENSMUSG00000036912.18, exon 2 of 11) -10743 ENSMUSG00000036912.18 ENSMUSG00000036912 ENSMUST00000076946 Piwil4 protein_coding Interval_132897 chr5 148608077 148609109 + 0 NA Intergenic Intergenic 5051 ENSMUSG00000107098.1 ENSMUSG00000107098 ENSMUST00000202418 Gm29815 processed_pseudogene Interval_133829 chr6 12892304 12893377 + 0 NA Intergenic Intergenic -24685 ENSMUSG00000108050.1 ENSMUSG00000108050 ENSMUST00000204922 Gm44472 TEC Interval_162255 chr8 126482911 126484129 + 0 NA Intergenic Intergenic -7108 ENSMUSG00000074026.3 ENSMUSG00000074026 ENSMUST00000098307 Gm6091 processed_pseudogene Interval_90147 chr2 28525448 28526537 + 0 NA intron (ENSMUSG00000026821.16, intron 1 of 3) protein_coding-intron (ENSMUSG00000026821.16, intron 1 of 17) -1858 ENSMUSG00000026821.16 ENSMUSG00000026821 ENSMUST00000140704 Ralgds protein_coding Interval_82391 chr18 73654126 73654497 + 0 NA intron (ENSMUSG00000024515.13, intron 4 of 7) protein_coding-intron (ENSMUSG00000024515.13, intron 8 of 11) -4492 ENSMUSG00000024515.13 ENSMUSG00000024515 ENSMUST00000129326 Smad4 protein_coding Interval_116267 chr4 109156395 109157280 + 0 NA promoter-TSS (ENSMUSG00000028559.17) protein_coding-promoter-TSS (ENSMUSG00000028559.17) 4360 ENSMUSG00000088014.1 ENSMUSG00000088014 ENSMUST00000157389 Gm23743 misc_RNA Interval_118749 chr4 133512647 133513668 + 0 NA Intergenic Intergenic -5866 ENSMUSG00000037600.16 ENSMUSG00000037600 ENSMUST00000121797 Kdf1 protein_coding Interval_161571 chr8 121278259 121278525 + 0 NA intron (ENSMUSG00000097384.1, intron 1 of 1) protein_coding-intron (ENSMUSG00000092329.1, intron 1 of 15) -74790 ENSMUSG00000097097.2 ENSMUSG00000097097 ENSMUST00000212635 5033426O07Rik lincRNA Interval_160427 chr8 109435730 109436195 + 0 NA Intergenic Intergenic -10218 ENSMUSG00000092821.1 ENSMUSG00000092821 ENSMUST00000175080 Gm23163 miRNA Interval_4596 chr1 75338549 75338780 + 0 NA Intergenic Intergenic -21217 ENSMUSG00000026209.15 ENSMUSG00000026209 ENSMUST00000189282 Dnpep protein_coding Interval_90935 chr2 33580394 33582378 + 0 NA intron (ENSMUSG00000038765.14, intron 2 of 7) protein_coding-intron (ENSMUSG00000038765.14, intron 2 of 7) -33012 ENSMUSG00000104403.1 ENSMUSG00000104403 ENSMUST00000193312 Gm38011 TEC Interval_134315 chr6 25023875 25024240 + 0 NA Intergenic Intergenic 23241 ENSMUSG00000107212.1 ENSMUSG00000107212 ENSMUST00000202130 Gm5302 processed_pseudogene Interval_105352 chr3 85369438 85369658 + 0 NA intron (ENSMUSG00000102805.5, intron 3 of 9) protein_coding-intron (ENSMUSG00000102805.5, intron 3 of 9) 52029 ENSMUSG00000099995.1 ENSMUSG00000099995 ENSMUST00000189046 1700036G14Rik antisense Interval_80004 chr18 36577181 36577718 + 0 NA intron (ENSMUSG00000024483.19, intron 2 of 33) protein_coding-intron (ENSMUSG00000024483.19, intron 2 of 33) -32509 ENSMUSG00000085172.1 ENSMUSG00000085172 ENSMUST00000153606 Gm6542 processed_pseudogene Interval_120260 chr4 144999326 145000378 + 0 NA intron (ENSMUSG00000020220.16, intron 21 of 23) protein_coding-intron (ENSMUSG00000020220.16, intron 65 of 67) -41004 ENSMUSG00000103911.1 ENSMUSG00000103911 ENSMUST00000193467 Gm38074 TEC Interval_136013 chr6 49533580 49534426 + 0 NA Intergenic Intergenic 9724 ENSMUSG00000108266.1 ENSMUSG00000108266 ENSMUST00000204010 Gm5305 processed_pseudogene Interval_40337 chr12 103959652 103959999 + 0 NA promoter-TSS (ENSMUSG00000072849.10) protein_coding-promoter-TSS (ENSMUSG00000072849.10) -850 ENSMUSG00000072849.10 ENSMUSG00000072849 ENSMUST00000085054 Serpina1e protein_coding Interval_42902 chr13 21240787 21243174 + 0 NA Intergenic Intergenic 50751 ENSMUSG00000004344.12 ENSMUSG00000004344 ENSMUST00000110491 Gpx5 protein_coding Interval_4497 chr1 74576291 74576541 + 0 NA exon (ENSMUSG00000026135.17, exon 5 of 9) protein_coding-exon (ENSMUSG00000026135.17, exon 5 of 9) 10556 ENSMUSG00000093155.1 ENSMUSG00000093155 ENSMUST00000175414 Gm25035 miRNA Interval_31913 chr11 103808925 103811200 + 0 NA intron (ENSMUSG00000000125.5, intron 2 of 4) protein_coding-intron (ENSMUSG00000000125.5, intron 2 of 4) 35912 ENSMUSG00000000125.5 ENSMUSG00000000125 ENSMUST00000000127 Wnt3 protein_coding Interval_135982 chr6 49233141 49234270 + 0 NA Intergenic Intergenic -21146 ENSMUSG00000107962.1 ENSMUSG00000107962 ENSMUST00000204899 Gm43980 TEC Interval_47366 chr13 82026694 82027083 + 0 NA Intergenic Intergenic -23863 ENSMUSG00000088923.1 ENSMUSG00000088923 ENSMUST00000158298 Gm24295 snoRNA Interval_51345 chr14 26578871 26580403 + 0 NA promoter-TSS (ENSMUSG00000040818.10) protein_coding-promoter-TSS (ENSMUSG00000040818.10) 13871 ENSMUSG00000107911.1 ENSMUSG00000107911 ENSMUST00000203611 Gm7565 processed_pseudogene Interval_53427 chr14 57372003 57372660 + 0 NA intron (ENSMUSG00000021947.11, intron 1 of 3) protein_coding-intron (ENSMUSG00000021947.11, intron 2 of 7) 8946 ENSMUSG00000114321.1 ENSMUSG00000114321 ENSMUST00000223673 Gm8971 processed_pseudogene Interval_158268 chr8 80728621 80729551 + 0 NA promoter-TSS (ENSMUSG00000110142.1) TEC-promoter-TSS (ENSMUSG00000110142.1) 51 ENSMUSG00000110142.1 ENSMUSG00000110142 ENSMUST00000209804 Gm45872 TEC Interval_47955 chr13 94626325 94626662 + 0 NA Intergenic Intergenic 7213 ENSMUSG00000103438.1 ENSMUSG00000103438 ENSMUST00000191800 Gm36991 TEC Interval_20101 chr10 114629905 114630711 + 0 NA intron (ENSMUSG00000050663.8, intron 3 of 18) protein_coding-intron (ENSMUSG00000050663.8, intron 3 of 18) -127439 ENSMUSG00000089934.1 ENSMUSG00000089934 ENSMUST00000161975 4930473D10Rik antisense Interval_173723 chrX 102950398 102950689 + 0 NA Intergenic Intergenic 22171 ENSMUSG00000109745.1 ENSMUSG00000109745 ENSMUST00000211116 1700018G05Rik protein_coding Interval_89645 chr2 23963270 23964263 + 0 NA Intergenic Intergenic 55325 ENSMUSG00000083373.1 ENSMUSG00000083373 ENSMUST00000117708 Gm13392 processed_pseudogene Interval_11551 chr1 182646814 182647026 + 0 NA Intergenic Intergenic -33019 ENSMUSG00000104376.1 ENSMUSG00000104376 ENSMUST00000192593 Gm37516 TEC Interval_46063 chr13 60692857 60693220 + 0 NA intron (ENSMUSG00000021559.14, intron 2 of 26) protein_coding-intron (ENSMUSG00000021559.14, intron 2 of 26) 51248 ENSMUSG00000114277.1 ENSMUSG00000114277 ENSMUST00000225897 Gm48583 processed_pseudogene Interval_67734 chr16 56639278 56639484 + 0 NA intron (ENSMUSG00000035258.15, intron 41 of 59) protein_coding-intron (ENSMUSG00000035258.15, intron 22 of 39) 77801 ENSMUSG00000022757.19 ENSMUSG00000022757 ENSMUST00000141404 Tfg protein_coding Interval_168773 chr9 86851692 86851899 + 0 NA intron (ENSMUSG00000033419.16, intron 2 of 27) protein_coding-intron (ENSMUSG00000033419.16, intron 2 of 28) 28644 ENSMUSG00000033419.16 ENSMUSG00000033419 ENSMUST00000191290 Snap91 protein_coding Interval_149340 chr7 97556713 97557583 + 0 NA intron (ENSMUSG00000035642.16, intron 1 of 1) protein_coding-intron (ENSMUSG00000035642.16, intron 2 of 2) 21079 ENSMUSG00000035642.16 ENSMUSG00000035642 ENSMUST00000205430 Aamdc protein_coding Interval_143029 chr6 148705585 148706474 + 0 NA intron (ENSMUSG00000107405.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000107405.1, intron 1 of 1) 4031 ENSMUSG00000107405.1 ENSMUSG00000107405 ENSMUST00000203917 Gm44115 lincRNA Interval_52463 chr14 46722184 46722576 + 0 NA Intergenic Intergenic 24019 ENSMUSG00000115690.1 ENSMUSG00000115690 ENSMUST00000226531 Gm48924 lincRNA Interval_114968 chr4 87785216 87785884 + 0 NA intron (ENSMUSG00000028496.17, intron 1 of 3) protein_coding-intron (ENSMUSG00000028496.17, intron 8 of 10) 20773 ENSMUSG00000028496.17 ENSMUSG00000028496 ENSMUST00000142454 Mllt3 protein_coding Interval_30490 chr11 94713995 94714742 + 0 NA Intergenic Intergenic -9869 ENSMUSG00000056008.1 ENSMUSG00000056008 ENSMUST00000069852 Gm11541 protein_coding Interval_163700 chr9 24516674 24517095 + 0 NA Intergenic Intergenic 13435 ENSMUSG00000111365.1 ENSMUSG00000111365 ENSMUST00000216236 Gm47772 bidirectional_promoter_lncRNA Interval_12423 chr1 193336944 193337163 + 0 NA intron (ENSMUSG00000026639.18, intron 22 of 26) protein_coding-intron (ENSMUSG00000026639.18, intron 18 of 22) -29787 ENSMUSG00000103895.1 ENSMUSG00000103895 ENSMUST00000191875 Gm37942 TEC Interval_130876 chr5 132922724 132924182 + 0 NA Intergenic Intergenic 121775 ENSMUSG00000088123.1 ENSMUSG00000088123 ENSMUST00000157498 Gm25722 misc_RNA Interval_64966 chr16 17575613 17577233 + 0 NA promoter-TSS (ENSMUSG00000022756.17) protein_coding-promoter-TSS (ENSMUSG00000022756.17) 248 ENSMUSG00000022756.17 ENSMUSG00000022756 ENSMUST00000232186 Slc7a4 protein_coding Interval_88980 chr2 13949961 13950525 + 0 NA intron (ENSMUSG00000063275.15, intron 7 of 7) protein_coding-intron (ENSMUSG00000063275.15, intron 7 of 7) 69806 ENSMUSG00000102553.1 ENSMUSG00000102553 ENSMUST00000191894 D930036K23Rik TEC Interval_167519 chr9 70207098 70208465 + 0 NA intron (ENSMUSG00000032220.10, intron 1 of 17) protein_coding-intron (ENSMUSG00000032220.10, intron 1 of 27) 431 ENSMUSG00000032220.10 ENSMUSG00000032220 ENSMUST00000034745 Myo1e protein_coding Interval_15031 chr10 42064280 42064923 + 0 NA Intergenic Intergenic -9295 ENSMUSG00000085666.3 ENSMUSG00000085666 ENSMUST00000121229 Tdg-ps2 processed_pseudogene Interval_149945 chr7 103312348 103312529 + 0 NA exon (ENSMUSG00000073953.4, exon 4 of 4) protein_coding-exon (ENSMUSG00000073953.4, exon 4 of 4) -3877 ENSMUSG00000073952.5 ENSMUSG00000073952 ENSMUST00000098203 Olfr597 protein_coding Interval_148825 chr7 89086284 89087000 + 0 NA Intergenic Intergenic 58855 ENSMUSG00000039428.11 ENSMUSG00000039428 ENSMUST00000137723 Tmem135 protein_coding Interval_80759 chr18 46881264 46881762 + 0 NA exon (ENSMUSG00000024481.5, exon 9 of 9) protein_coding-exon (ENSMUSG00000024481.5, exon 9 of 9) -19288 ENSMUSG00000094292.1 ENSMUSG00000094292 ENSMUST00000178659 Gm23610 snRNA Interval_85211 chr19 23816517 23817835 + 0 NA intron (ENSMUSG00000024897.9, intron 1 of 12) protein_coding-intron (ENSMUSG00000024897.9, intron 1 of 12) 16638 ENSMUSG00000118287.1 ENSMUSG00000118287 ENSMUST00000236371 Gm50300 processed_pseudogene Interval_75392 chr17 66325827 66327415 + 0 NA Intergenic Intergenic -7109 ENSMUSG00000117010.1 ENSMUSG00000117010 ENSMUST00000233050 Gm49933 processed_pseudogene Interval_49482 chr13 112353787 112355203 + 0 NA intron (ENSMUSG00000049985.15, intron 7 of 7) protein_coding-intron (ENSMUSG00000049985.15, intron 6 of 10) 13350 ENSMUSG00000114536.1 ENSMUSG00000114536 ENSMUST00000224393 Gm48837 antisense Interval_89000 chr2 14183697 14184636 + 0 NA intron (ENSMUSG00000061531.8, intron 1 of 3) protein_coding-intron (ENSMUSG00000061531.8, intron 1 of 3) 5597 ENSMUSG00000083545.2 ENSMUSG00000083545 ENSMUST00000120155 Gm13320 TEC Interval_122278 chr5 20906172 20906686 + 0 NA intron (ENSMUSG00000039968.9, intron 4 of 6) protein_coding-intron (ENSMUSG00000039968.9, intron 4 of 7) 15970 ENSMUSG00000039968.9 ENSMUSG00000039968 ENSMUST00000197089 Rsbn1l protein_coding Interval_14836 chr10 40378919 40380069 + 0 NA intron (ENSMUSG00000038481.13, intron 1 of 11) protein_coding-intron (ENSMUSG00000038481.13, intron 1 of 12) -29391 ENSMUSG00000038491.9 ENSMUSG00000038491 ENSMUST00000044774 Cdk19os antisense Interval_56151 chr14 107756493 107757499 + 0 NA Intergenic Intergenic 8546 ENSMUSG00000115273.1 ENSMUSG00000115273 ENSMUST00000226502 Gm9335 processed_pseudogene Interval_35009 chr12 16628598 16629562 + 0 NA intron (ENSMUSG00000020593.16, intron 1 of 21) protein_coding-intron (ENSMUSG00000020593.16, intron 1 of 21) -18114 ENSMUSG00000020593.16 ENSMUSG00000020593 ENSMUST00000221146 Lpin1 protein_coding Interval_636 chr1 9324236 9324769 + 0 NA Intergenic Intergenic 37580 ENSMUSG00000102871.1 ENSMUSG00000102871 ENSMUST00000195180 Gm37143 TEC Interval_36921 chr12 55354502 55355692 + 0 NA intron (ENSMUSG00000021023.14, intron 4 of 6) protein_coding-intron (ENSMUSG00000021023.14, intron 4 of 6) -29125 ENSMUSG00000021024.14 ENSMUSG00000021024 ENSMUST00000162972 Psma6 protein_coding Interval_153587 chr8 3546133 3547132 + 0 NA Intergenic Intergenic 9846 ENSMUSG00000004565.15 ENSMUSG00000004565 ENSMUST00000208691 Pnpla6 protein_coding Interval_50460 chr14 13651077 13651339 + 0 NA Intergenic Intergenic -19668 ENSMUSG00000044772.2 ENSMUSG00000044772 ENSMUST00000061045 Sntn protein_coding Interval_168047 chr9 75589779 75591172 + 0 NA intron (ENSMUSG00000032186.15, intron 5 of 10) protein_coding-intron (ENSMUSG00000032186.15, intron 4 of 9) -5366 ENSMUSG00000110895.1 ENSMUSG00000110895 ENSMUST00000214120 Gm48822 TEC Interval_172240 chrX 11672035 11672400 + 0 NA Intergenic Intergenic 11907 ENSMUSG00000080811.1 ENSMUSG00000080811 ENSMUST00000117403 Gm14513 processed_pseudogene Interval_42765 chr13 19209043 19209273 + 0 NA Intergenic Intergenic -1185 ENSMUSG00000104962.1 ENSMUSG00000104962 ENSMUST00000200495 Trgj1 TR_J_gene Interval_64105 chr16 8403407 8403754 + 0 NA TTS (ENSMUSG00000077152.1) snoRNA-TTS (ENSMUSG00000077152.1) 766 ENSMUSG00000077152.1 ENSMUSG00000077152 ENSMUST00000103964 Gm24579 snoRNA Interval_119285 chr4 136651411 136652145 + 0 NA exon (ENSMUSG00000028664.14, exon 16 of 16) protein_coding-exon (ENSMUSG00000028664.14, exon 16 of 16) 12196 ENSMUSG00000103119.1 ENSMUSG00000103119 ENSMUST00000195460 Gm37583 TEC Interval_122557 chr5 23797169 23797583 + 0 NA TTS (ENSMUSG00000028999.15) protein_coding-TTS (ENSMUSG00000028999.15) 6674 ENSMUSG00000104569.1 ENSMUSG00000104569 ENSMUST00000199495 Gm43054 TEC Interval_122351 chr5 21631604 21631970 + 0 NA intron (ENSMUSG00000048520.16, intron 3 of 18) protein_coding-intron (ENSMUSG00000048520.16, intron 3 of 19) 13847 ENSMUSG00000048520.16 ENSMUSG00000048520 ENSMUST00000200168 Fbxl13 protein_coding Interval_82748 chr18 76396359 76396589 + 0 NA Intergenic Intergenic 74650 ENSMUSG00000117816.1 ENSMUSG00000117816 ENSMUST00000235901 Gm50360 processed_pseudogene Interval_2997 chr1 51998523 51998764 + 0 NA intron (ENSMUSG00000062939.11, intron 2 of 24) protein_coding-intron (ENSMUSG00000062939.11, intron 2 of 24) -57382 ENSMUSG00000072324.4 ENSMUSG00000072324 ENSMUST00000097103 Gm8420 processed_pseudogene Interval_134669 chr6 30236439 30236910 + 0 NA intron (ENSMUSG00000039159.16, intron 3 of 4) protein_coding-intron (ENSMUSG00000039159.16, intron 3 of 4) 63781 ENSMUSG00000103108.2 ENSMUSG00000103108 ENSMUST00000194541 Rncr4 lincRNA Interval_169895 chr9 102789349 102789773 + 0 NA exon (ENSMUSG00000110884.1, exon 5 of 5) lincRNA-exon (ENSMUSG00000110884.1, exon 5 of 5) 18066 ENSMUSG00000110884.1 ENSMUSG00000110884 ENSMUST00000217446 Gm47416 lincRNA Interval_164442 chr9 37059848 37060584 + 0 NA intron (ENSMUSG00000035934.16, intron 2 of 4) protein_coding-intron (ENSMUSG00000035934.16, intron 2 of 12) 33817 ENSMUSG00000077401.1 ENSMUSG00000077401 ENSMUST00000104213 n-R5s82 rRNA Interval_67515 chr16 50122192 50122749 + 0 NA Intergenic Intergenic 11397 ENSMUSG00000098028.1 ENSMUSG00000098028 ENSMUST00000182962 Gm8824 processed_pseudogene Interval_141586 chr6 129691048 129691424 + 0 NA promoter-TSS (ENSMUSG00000076212.1) miRNA-promoter-TSS (ENSMUSG00000076212.1) -299 ENSMUSG00000076212.1 ENSMUSG00000076212 ENSMUST00000102257 Mir680-1 miRNA Interval_2945 chr1 51458210 51460179 + 0 NA promoter-TSS (ENSMUSG00000101702.1) lincRNA-promoter-TSS (ENSMUSG00000101702.1) -263 ENSMUSG00000101702.1 ENSMUSG00000101702 ENSMUST00000189460 1700072G22Rik lincRNA Interval_98273 chr2 150716279 150716523 + 0 NA Intergenic Intergenic 8220 ENSMUSG00000100630.1 ENSMUSG00000100630 ENSMUST00000187349 Gm28450 lincRNA Interval_57133 chr15 6792456 6793238 + 0 NA intron (ENSMUSG00000050310.9, intron 34 of 37) protein_coding-intron (ENSMUSG00000050310.9, intron 34 of 37) 81410 ENSMUSG00000022146.12 ENSMUSG00000022146 ENSMUST00000177263 Osmr protein_coding Interval_37452 chr12 69087616 69088483 + 0 NA Intergenic Intergenic 32298 ENSMUSG00000113716.1 ENSMUSG00000113716 ENSMUST00000222118 Gm47518 lincRNA Interval_13198 chr10 12991564 12992227 + 0 NA Intergenic Intergenic -13448 ENSMUSG00000078348.4 ENSMUSG00000078348 ENSMUST00000105139 Sf3b5 protein_coding Interval_134651 chr6 30156004 30156636 + 0 NA Intergenic Intergenic 9672 ENSMUSG00000076361.1 ENSMUSG00000076361 ENSMUST00000102406 Mir182 miRNA Interval_148482 chr7 81624840 81625109 + 0 NA intron (ENSMUSG00000025813.14, intron 3 of 6) protein_coding-intron (ENSMUSG00000025813.14, intron 3 of 8) 14865 ENSMUSG00000109194.1 ENSMUSG00000109194 ENSMUST00000207526 Gm44570 antisense Interval_87188 chr19 46732855 46733047 + 0 NA intron (ENSMUSG00000003559.8, intron 8 of 8) protein_coding-intron (ENSMUSG00000003559.8, intron 10 of 10) 24983 ENSMUSG00000003559.8 ENSMUSG00000003559 ENSMUST00000235266 As3mt protein_coding Interval_143654 chr7 14010450 14011422 + 0 NA Intergenic Intergenic 4278 ENSMUSG00000099744.1 ENSMUSG00000099744 ENSMUST00000186718 Tmem167-ps3 processed_pseudogene Interval_17284 chr10 75568264 75569025 + 0 NA promoter-TSS (ENSMUSG00000006345.10) protein_coding-promoter-TSS (ENSMUSG00000006345.10) -14750 ENSMUSG00000046807.10 ENSMUSG00000046807 ENSMUST00000051129 Lrrc75b protein_coding Interval_66742 chr16 36898208 36898430 + 0 NA intron (ENSMUSG00000034243.17, intron 8 of 21) protein_coding-intron (ENSMUSG00000034243.17, intron 7 of 20) -1130 ENSMUSG00000084834.1 ENSMUSG00000084834 ENSMUST00000153572 4930565N06Rik antisense Interval_40943 chr12 110074646 110075250 + 0 NA intron (ENSMUSG00000113868.1, intron 2 of 2) lincRNA-intron (ENSMUSG00000113868.1, intron 2 of 2) -8872 ENSMUSG00000113042.1 ENSMUSG00000113042 ENSMUST00000220902 Gm47188 TEC Interval_85377 chr19 25334147 25334820 + 0 NA intron (ENSMUSG00000032702.16, intron 3 of 13) protein_coding-intron (ENSMUSG00000032702.16, intron 3 of 13) 12720 ENSMUSG00000118238.1 ENSMUSG00000118238 ENSMUST00000235913 Gm34432 processed_pseudogene Interval_55455 chr14 87467707 87467949 + 0 NA intron (ENSMUSG00000022019.16, intron 3 of 13) protein_coding-intron (ENSMUSG00000022019.16, intron 3 of 13) -25125 ENSMUSG00000115184.1 ENSMUSG00000115184 ENSMUST00000226795 Gm49197 TEC Interval_173625 chrX 101244904 101245266 + 0 NA Intergenic Intergenic 2347 ENSMUSG00000077303.1 ENSMUSG00000077303 ENSMUST00000104115 Gm22472 snRNA Interval_658 chr1 9628573 9630614 + 0 NA intron (ENSMUSG00000079671.8, intron 1 of 3) processed_transcript-intron (ENSMUSG00000079671.8, intron 1 of 4) 1582 ENSMUSG00000079671.8 ENSMUSG00000079671 ENSMUST00000148310 2610203C22Rik processed_transcript Interval_66801 chr16 37753012 37754625 + 0 NA Intergenic Intergenic -23237 ENSMUSG00000022816.11 ENSMUSG00000022816 ENSMUST00000123077 Fstl1 protein_coding Interval_9708 chr1 161183855 161184703 + 0 NA intron (ENSMUSG00000102817.2, intron 4 of 25) transcribed_unprocessed_pseudogene-intron (ENSMUSG00000102817.2, intron 4 of 25) -16530 ENSMUSG00000102817.2 ENSMUSG00000102817 ENSMUST00000212885 Gm6185 transcribed_unprocessed_pseudogene Interval_159184 chr8 91459568 91459801 + 0 NA intron (ENSMUSG00000110138.1, intron 3 of 3) protein_coding-intron (ENSMUSG00000055932.15, intron 4 of 8) 9378 ENSMUSG00000110079.1 ENSMUSG00000110079 ENSMUST00000211232 Gm45292 TEC Interval_166421 chr9 59339651 59341593 + 0 NA intron (ENSMUSG00000025235.8, intron 4 of 7) protein_coding-intron (ENSMUSG00000025235.8, intron 5 of 15) -13109 ENSMUSG00000025235.8 ENSMUSG00000025235 ENSMUST00000214225 Bbs4 protein_coding Interval_96903 chr2 129330695 129331168 + 0 NA Intergenic Intergenic -15452 ENSMUSG00000065057.1 ENSMUSG00000065057 ENSMUST00000083123 Gm25703 snRNA Interval_95156 chr2 104409662 104411086 + 0 NA promoter-TSS (ENSMUSG00000068373.15) protein_coding-promoter-TSS (ENSMUSG00000068373.15) 639 ENSMUSG00000068373.15 ENSMUSG00000068373 ENSMUST00000149165 D430041D05Rik protein_coding Interval_153529 chr8 3185118 3185332 + 0 NA intron (ENSMUSG00000005534.10, intron 2 of 4) protein_coding-intron (ENSMUSG00000005534.10, intron 9 of 20) -25670 ENSMUSG00000005534.10 ENSMUSG00000005534 ENSMUST00000139504 Insr protein_coding Interval_102172 chr3 19162561 19163524 + 0 NA promoter-TSS (ENSMUSG00000027599.9) protein_coding-promoter-TSS (ENSMUSG00000027599.9) 23 ENSMUSG00000027599.9 ENSMUSG00000027599 ENSMUST00000029125 Armc1 protein_coding Interval_36329 chr12 41326388 41326879 + 0 NA intron (ENSMUSG00000056899.10, intron 3 of 5) protein_coding-intron (ENSMUSG00000056899.10, intron 4 of 6) 21457 ENSMUSG00000113086.1 ENSMUSG00000113086 ENSMUST00000223331 Gm47376 antisense Interval_42908 chr13 21267279 21268720 + 0 NA Intergenic Intergenic 24732 ENSMUSG00000004344.12 ENSMUSG00000004344 ENSMUST00000110491 Gpx5 protein_coding Interval_59375 chr15 51971752 51971965 + 0 NA exon (ENSMUSG00000022314.10, exon 8 of 14) protein_coding-exon (ENSMUSG00000022314.10, exon 8 of 14) 19652 ENSMUSG00000022314.10 ENSMUSG00000022314 ENSMUST00000226529 Rad21 protein_coding Interval_156637 chr8 56167165 56167468 + 0 NA Intergenic Intergenic -127269 ENSMUSG00000031613.9 ENSMUSG00000031613 ENSMUST00000034026 Hpgd protein_coding Interval_89065 chr2 15272591 15273915 + 0 NA Intergenic Intergenic -69372 ENSMUSG00000080930.2 ENSMUSG00000080930 ENSMUST00000119955 Gm13367 processed_pseudogene Interval_32431 chr11 107509634 107512133 + 0 NA TTS (ENSMUSG00000085864.1) lincRNA-TTS (ENSMUSG00000085864.1) 16337 ENSMUSG00000085864.1 ENSMUSG00000085864 ENSMUST00000149428 C330019F10Rik lincRNA Interval_110538 chr4 3729657 3730724 + 0 NA intron (ENSMUSG00000042228.14, intron 1 of 1) protein_coding-intron (ENSMUSG00000042228.14, intron 1 of 12) -9164 ENSMUSG00000083186.1 ENSMUSG00000083186 ENSMUST00000121238 Gm11805 processed_pseudogene Interval_31608 chr11 101679512 101681257 + 0 NA Intergenic Intergenic 14843 ENSMUSG00000034936.2 ENSMUSG00000034936 ENSMUST00000039388 Arl4d protein_coding Interval_76235 chr17 78287926 78288858 + 0 NA intron (ENSMUSG00000024074.8, intron 2 of 5) protein_coding-intron (ENSMUSG00000024074.8, intron 4 of 16) -14269 ENSMUSG00000092979.1 ENSMUSG00000092979 ENSMUST00000175238 Gm25069 miRNA Interval_22622 chr11 12354118 12354549 + 0 NA intron (ENSMUSG00000020173.17, intron 5 of 11) protein_coding-intron (ENSMUSG00000020173.17, intron 6 of 14) 32058 ENSMUSG00000086584.8 ENSMUSG00000086584 ENSMUST00000174550 Gm12002 antisense Interval_10776 chr1 174595150 174595407 + 0 NA intron (ENSMUSG00000028354.13, intron 4 of 17) protein_coding-intron (ENSMUSG00000028354.13, intron 4 of 17) -14531 ENSMUSG00000028354.13 ENSMUSG00000028354 ENSMUST00000193905 Fmn2 protein_coding Interval_34005 chr11 119947861 119948681 + 0 NA intron (ENSMUSG00000025372.16, intron 1 of 4) protein_coding-intron (ENSMUSG00000025372.16, intron 1 of 13) 5155 ENSMUSG00000025372.16 ENSMUSG00000025372 ENSMUST00000131580 Baiap2 protein_coding Interval_18601 chr10 88349652 88350564 + 0 NA intron (ENSMUSG00000020057.2, intron 2 of 3) protein_coding-intron (ENSMUSG00000020057.2, intron 1 of 6) 6888 ENSMUSG00000020057.2 ENSMUSG00000020057 ENSMUST00000138159 Dram1 protein_coding Interval_164589 chr9 39556109 39556315 + 0 NA Intergenic Intergenic -2158 ENSMUSG00000050853.3 ENSMUSG00000050853 ENSMUST00000062545 Olfr958 protein_coding Interval_168908 chr9 88519492 88521577 + 0 NA TTS (ENSMUSG00000094263.1) snoRNA-TTS (ENSMUSG00000094263.1) 1066 ENSMUSG00000094263.1 ENSMUSG00000094263 ENSMUST00000178154 Snord50a snoRNA Interval_99398 chr2 160597471 160598633 + 0 NA intron (ENSMUSG00000078956.3, intron 1 of 2) lincRNA-intron (ENSMUSG00000078956.3, intron 1 of 2) 14695 ENSMUSG00000078955.3 ENSMUSG00000078955 ENSMUST00000128681 Gm14222 sense_intronic Interval_154531 chr8 19018968 19019497 + 0 NA Intergenic Intergenic 7334 ENSMUSG00000053790.3 ENSMUSG00000053790 ENSMUST00000066416 Defb38 protein_coding Interval_68988 chr16 89959995 89961341 + 0 NA promoter-TSS (ENSMUSG00000002489.16) protein_coding-promoter-TSS (ENSMUSG00000002489.16) -129315 ENSMUSG00000116536.1 ENSMUSG00000116536 ENSMUST00000232386 Gm2805 processed_pseudogene Interval_170880 chr9 111505662 111506589 + 0 NA Intergenic Intergenic 42815 ENSMUSG00000106647.1 ENSMUSG00000106647 ENSMUST00000199378 Gm42523 lincRNA Interval_20951 chr10 122707701 122707961 + 0 NA intron (ENSMUSG00000034613.12, intron 1 of 5) protein_coding-intron (ENSMUSG00000034613.12, intron 1 of 9) 28516 ENSMUSG00000099225.1 ENSMUSG00000099225 ENSMUST00000185165 Mir8104 miRNA Interval_94442 chr2 91255778 91257940 + 0 NA promoter-TSS (ENSMUSG00000027257.13) protein_coding-promoter-TSS (ENSMUSG00000027257.13) 46 ENSMUSG00000027257.13 ENSMUSG00000027257 ENSMUST00000128684 Pacsin3 protein_coding Interval_246 KZ289068.1 286640 287710 + 0 NA NA NA NA NA Interval_48977 chr13 106649960 106650426 + 0 NA Intergenic Intergenic -103133 ENSMUSG00000059877.3 ENSMUSG00000059877 ENSMUST00000076359 Dph3b-ps processed_pseudogene Interval_59640 chr15 57140249 57140682 + 0 NA Intergenic Intergenic 98648 ENSMUSG00000094730.1 ENSMUSG00000094730 ENSMUST00000177706 Gm26178 snRNA Interval_63945 chr16 4701058 4702242 + 0 NA intron (ENSMUSG00000004069.17, intron 8 of 10) protein_coding-intron (ENSMUSG00000004069.17, intron 9 of 11) 17454 ENSMUSG00000063445.14 ENSMUSG00000063445 ENSMUST00000125140 Nmral1 protein_coding Interval_174236 chrX 140480372 140481007 + 0 NA Intergenic Intergenic 24076 ENSMUSG00000031432.3 ENSMUSG00000031432 ENSMUST00000033809 Prps1 protein_coding Interval_87848 chr19 56474359 56475456 + 0 NA intron (ENSMUSG00000035818.14, intron 7 of 8) protein_coding-intron (ENSMUSG00000035818.14, intron 7 of 12) 13251 ENSMUSG00000035818.14 ENSMUSG00000035818 ENSMUST00000225008 Plekhs1 protein_coding Interval_31886 chr11 103617876 103618188 + 0 NA exon (ENSMUSG00000034239.14, exon 1 of 14) protein_coding-exon (ENSMUSG00000034239.14, exon 1 of 14) -3293 ENSMUSG00000034239.14 ENSMUSG00000034239 ENSMUST00000059279 Gm884 protein_coding Interval_116345 chr4 110027382 110030099 + 0 NA Intergenic Intergenic 50687 ENSMUSG00000047143.3 ENSMUSG00000047143 ENSMUST00000061187 Dmrta2 protein_coding Interval_174383 chrX 151001842 151002116 + 0 NA TTS (ENSMUSG00000025266.11) protein_coding-TTS (ENSMUSG00000025266.11) -3891 ENSMUSG00000081782.1 ENSMUSG00000081782 ENSMUST00000121540 Gm15152 processed_pseudogene Interval_112040 chr4 33417411 33417902 + 0 NA intron (ENSMUSG00000028274.17, intron 13 of 15) protein_coding-intron (ENSMUSG00000028274.17, intron 13 of 15) -20425 ENSMUSG00000098310.1 ENSMUSG00000098310 ENSMUST00000183962 Mir8118 miRNA Interval_139505 chr6 100619221 100619431 + 0 NA intron (ENSMUSG00000035378.17, intron 6 of 7) protein_coding-intron (ENSMUSG00000035378.17, intron 6 of 7) 7614 ENSMUSG00000108019.1 ENSMUSG00000108019 ENSMUST00000203525 Gm44108 processed_pseudogene Interval_71155 chr17 20399047 20399253 + 0 NA Intergenic Intergenic -5854 ENSMUSG00000093729.1 ENSMUSG00000093729 ENSMUST00000176293 Vmn1r-ps141 unprocessed_pseudogene Interval_23767 chr11 26051093 26052558 + 0 NA intron (ENSMUSG00000032985.15, intron 1 of 5) protein_coding-intron (ENSMUSG00000032985.15, intron 1 of 6) -150415 ENSMUSG00000099015.1 ENSMUSG00000099015 ENSMUST00000185114 Mir6372 miRNA Interval_97212 chr2 132275682 132276474 + 0 NA intron (ENSMUSG00000058793.14, intron 1 of 3) protein_coding-intron (ENSMUSG00000058793.14, intron 1 of 12) 12837 ENSMUSG00000058793.14 ENSMUSG00000058793 ENSMUST00000138194 Cds2 protein_coding Interval_132861 chr5 148370792 148372684 + 0 NA promoter-TSS (ENSMUSG00000041313.14) protein_coding-promoter-TSS (ENSMUSG00000041313.14) 28053 ENSMUSG00000041313.14 ENSMUSG00000041313 ENSMUST00000201348 Slc7a1 protein_coding Interval_37774 chr12 71891623 71892342 + 0 NA intron (ENSMUSG00000034574.10, intron 1 of 24) protein_coding-intron (ENSMUSG00000034574.10, intron 1 of 25) -44691 ENSMUSG00000098224.1 ENSMUSG00000098224 ENSMUST00000183329 Gm7985 processed_pseudogene Interval_75710 chr17 70805867 70807163 + 0 NA promoter-TSS (ENSMUSG00000117231.1) processed_transcript-promoter-TSS (ENSMUSG00000117231.1) -456 ENSMUSG00000117231.1 ENSMUSG00000117231 ENSMUST00000233879 Gm41609 processed_transcript Interval_73588 chr17 40838492 40838879 + 0 NA intron (ENSMUSG00000023926.8, intron 9 of 9) protein_coding-intron (ENSMUSG00000023926.8, intron 9 of 9) -15351 ENSMUSG00000098082.1 ENSMUSG00000098082 ENSMUST00000182867 Gm20574 unitary_pseudogene Interval_135266 chr6 37931205 37931715 + 0 NA TTS (ENSMUSG00000029833.17) protein_coding-TTS (ENSMUSG00000029833.17) 60649 ENSMUSG00000029833.17 ENSMUSG00000029833 ENSMUST00000135387 Trim24 protein_coding Interval_52370 chr14 45450884 45451512 + 0 NA Intergenic Intergenic -6209 ENSMUSG00000115209.1 ENSMUSG00000115209 ENSMUST00000228291 Gm34250 lincRNA Interval_126537 chr5 89952283 89953785 + 0 NA Intergenic Intergenic -69700 ENSMUSG00000043635.12 ENSMUSG00000043635 ENSMUST00000196507 Adamts3 protein_coding Interval_40902 chr12 109716798 109717132 + 0 NA promoter-TSS (ENSMUSG00000076241.2) miRNA-promoter-TSS (ENSMUSG00000076241.2) -120 ENSMUSG00000076272.1 ENSMUSG00000076272 ENSMUST00000102317 Mir666 miRNA Interval_20863 chr10 121600793 121601061 + 0 NA promoter-TSS (ENSMUSG00000034667.8) protein_coding-promoter-TSS (ENSMUSG00000034667.8) -114 ENSMUSG00000034667.8 ENSMUSG00000034667 ENSMUST00000217865 Xpot protein_coding Interval_167852 chr9 73070664 73071652 + 0 NA intron (ENSMUSG00000032202.11, intron 2 of 6) protein_coding-intron (ENSMUSG00000032202.11, intron 1 of 5) 10207 ENSMUSG00000098468.1 ENSMUSG00000098468 ENSMUST00000184223 Gm27186 processed_pseudogene Interval_83462 chr18 85964764 85965138 + 0 NA Intergenic Intergenic -116222 ENSMUSG00000118241.1 ENSMUSG00000118241 ENSMUST00000237360 Gm5824 processed_pseudogene Interval_87894 chr19 56929560 56930061 + 0 NA TTS (ENSMUSG00000025083.18) protein_coding-TTS (ENSMUSG00000025083.18) 7428 ENSMUSG00000025083.18 ENSMUSG00000025083 ENSMUST00000132851 Afap1l2 protein_coding Interval_144221 chr7 20399368 20399696 + 0 NA Intergenic Intergenic -18410 ENSMUSG00000096386.1 ENSMUSG00000096386 ENSMUST00000177815 Vmn1r100 protein_coding Interval_93020 chr2 69628778 69629838 + 0 NA Intergenic Intergenic -17922 ENSMUSG00000063145.10 ENSMUSG00000063145 ENSMUST00000127806 Bbs5 protein_coding Interval_169445 chr9 97368318 97368520 + 0 NA intron (ENSMUSG00000032451.6, intron 1 of 4) protein_coding-intron (ENSMUSG00000032451.6, intron 1 of 4) 1539 ENSMUSG00000032451.6 ENSMUSG00000032451 ENSMUST00000035026 Trim42 protein_coding Interval_52142 chr14 37089368 37090237 + 0 NA intron (ENSMUSG00000021803.10, intron 7 of 16) protein_coding-intron (ENSMUSG00000021803.10, intron 7 of 16) 8545 ENSMUSG00000021803.10 ENSMUSG00000021803 ENSMUST00000022337 Cdhr1 protein_coding Interval_164663 chr9 40413326 40416370 + 0 NA intron (ENSMUSG00000040111.17, intron 1 of 20) protein_coding-intron (ENSMUSG00000040111.17, intron 1 of 19) -47946 ENSMUSG00000110928.1 ENSMUSG00000110928 ENSMUST00000214407 Gm48114 TEC Interval_1568 chr1 26527902 26528192 + 0 NA Intergenic Intergenic -38786 ENSMUSG00000088111.1 ENSMUSG00000088111 ENSMUST00000157486 Gm24064 snoRNA Interval_164900 chr9 42942904 42945049 + 0 NA intron (ENSMUSG00000032017.14, intron 1 of 20) protein_coding-intron (ENSMUSG00000032017.14, intron 1 of 20) 517 ENSMUSG00000032017.14 ENSMUSG00000032017 ENSMUST00000034515 Grik4 protein_coding Interval_122150 chr5 18314091 18314701 + 0 NA intron (ENSMUSG00000057614.6, intron 1 of 7) protein_coding-intron (ENSMUSG00000057614.6, intron 1 of 7) -35952 ENSMUSG00000104540.1 ENSMUSG00000104540 ENSMUST00000198905 Gm3527 processed_pseudogene Interval_57798 chr15 20400047 20400242 + 0 NA Intergenic Intergenic -23217 ENSMUSG00000115203.1 ENSMUSG00000115203 ENSMUST00000227881 Gm49178 processed_pseudogene Interval_60534 chr15 74685526 74686412 + 0 NA Intergenic Intergenic -13399 ENSMUSG00000022602.14 ENSMUSG00000022602 ENSMUST00000110009 Arc protein_coding Interval_163270 chr9 20447692 20447924 + 0 NA intron (ENSMUSG00000063108.15, intron 1 of 3) protein_coding-intron (ENSMUSG00000063108.15, intron 2 of 7) 9363 ENSMUSG00000111626.1 ENSMUSG00000111626 ENSMUST00000215252 Gm48738 processed_pseudogene Interval_138754 chr6 91645097 91646248 + 0 NA Intergenic Intergenic 33551 ENSMUSG00000108751.1 ENSMUSG00000108751 ENSMUST00000206576 Gm45217 TEC Interval_173331 chrX 80139446 80139745 + 0 NA Intergenic Intergenic 55257 ENSMUSG00000081221.4 ENSMUSG00000081221 ENSMUST00000121831 Gm14760 processed_pseudogene Interval_162659 chr9 7575672 7575851 + 0 NA intron (ENSMUSG00000070323.11, intron 4 of 8) protein_coding-intron (ENSMUSG00000070323.11, intron 4 of 9) 4298 ENSMUSG00000070323.11 ENSMUSG00000070323 ENSMUST00000152878 Mmp27 protein_coding Interval_96625 chr2 126606299 126606630 + 0 NA exon (ENSMUSG00000027360.5, exon 4 of 12) protein_coding-exon (ENSMUSG00000027360.5, exon 4 of 12) 12835 ENSMUSG00000027360.5 ENSMUSG00000027360 ENSMUST00000148591 Hdc protein_coding Interval_11650 chr1 183853764 183854851 + 0 NA Intergenic Intergenic -63823 ENSMUSG00000104007.1 ENSMUSG00000104007 ENSMUST00000194189 Gm38332 processed_pseudogene Interval_60346 chr15 73090064 73091270 + 0 NA intron (ENSMUSG00000068391.8, intron 1 of 1) protein_coding-intron (ENSMUSG00000068391.8, intron 1 of 2) 255 ENSMUSG00000068391.8 ENSMUSG00000068391 ENSMUST00000137698 Chrac1 protein_coding Interval_141344 chr6 127475254 127476207 + 0 NA intron (ENSMUSG00000037997.12, intron 4 of 5) protein_coding-intron (ENSMUSG00000037997.12, intron 5 of 8) 4203 ENSMUSG00000037997.12 ENSMUSG00000037997 ENSMUST00000134018 Parp11 protein_coding Interval_127317 chr5 102724064 102724320 + 0 NA promoter-TSS (ENSMUSG00000057315.14) protein_coding-promoter-TSS (ENSMUSG00000057315.14) -84857 ENSMUSG00000057315.14 ENSMUSG00000057315 ENSMUST00000070000 Arhgap24 protein_coding Interval_102316 chr3 21840749 21841045 + 0 NA Intergenic Intergenic -78366 ENSMUSG00000103441.1 ENSMUSG00000103441 ENSMUST00000193217 7530428D23Rik transcribed_processed_pseudogene Interval_151910 chr7 127484935 127485218 + 0 NA promoter-TSS (ENSMUSG00000042423.9) protein_coding-promoter-TSS (ENSMUSG00000042423.9) -4175 ENSMUSG00000098267.1 ENSMUSG00000098267 ENSMUST00000183486 Mir7060 miRNA Interval_92252 chr2 57329270 57329803 + 0 NA intron (ENSMUSG00000026827.12, intron 6 of 16) protein_coding-intron (ENSMUSG00000026827.12, intron 6 of 16) -53850 ENSMUSG00000084292.1 ENSMUSG00000084292 ENSMUST00000118714 Gm13535 processed_pseudogene Interval_122594 chr5 24076825 24077722 + 0 NA Intergenic Intergenic -7971 ENSMUSG00000106118.1 ENSMUSG00000106118 ENSMUST00000197900 Gm18038 processed_pseudogene Interval_80244 chr18 38499115 38499496 + 0 NA Intergenic Intergenic -18002 ENSMUSG00000118112.1 ENSMUSG00000118112 ENSMUST00000236084 Gm50349 processed_pseudogene Interval_85889 chr19 32765997 32767658 + 0 NA intron (ENSMUSG00000013663.7, intron 1 of 4) protein_coding-intron (ENSMUSG00000013663.7, intron 1 of 8) -44398 ENSMUSG00000013663.7 ENSMUSG00000013663 ENSMUST00000154806 Pten protein_coding Interval_56902 chr14 122992713 122994607 + 0 NA Intergenic Intergenic 41541 ENSMUSG00000085423.1 ENSMUSG00000085423 ENSMUST00000136187 4930594M22Rik antisense Interval_97767 chr2 143937771 143937992 + 0 NA intron (ENSMUSG00000015932.8, intron 1 of 3) protein_coding-intron (ENSMUSG00000015932.8, intron 1 of 3) 19764 ENSMUSG00000027422.15 ENSMUSG00000027422 ENSMUST00000037875 Rrbp1 protein_coding Interval_169303 chr9 96261197 96262233 + 0 NA intron (ENSMUSG00000032411.15, intron 1 of 9) protein_coding-intron (ENSMUSG00000032411.15, intron 3 of 12) 8386 ENSMUSG00000100382.1 ENSMUSG00000100382 ENSMUST00000190012 Gm28924 processed_pseudogene Interval_103733 chr3 52179589 52181242 + 0 NA promoter-TSS (ENSMUSG00000103726.1) lincRNA-promoter-TSS (ENSMUSG00000103726.1) -443 ENSMUSG00000103726.1 ENSMUSG00000103726 ENSMUST00000193192 Gm30074 lincRNA Interval_43089 chr13 23772095 23773702 + 0 NA intron (ENSMUSG00000064140.3, intron 1 of 9) protein_coding-intron (ENSMUSG00000064140.3, intron 1 of 9) 2985 ENSMUSG00000064140.3 ENSMUSG00000064140 ENSMUST00000074067 Trim38 protein_coding Interval_27112 chr11 62994566 62997086 + 0 NA intron (ENSMUSG00000087604.7, intron 2 of 2) antisense-intron (ENSMUSG00000087604.7, intron 2 of 2) 8302 ENSMUSG00000087604.7 ENSMUSG00000087604 ENSMUST00000130177 Cdrt4os1 antisense Interval_144918 chr7 28925263 28926618 + 0 NA exon (ENSMUSG00000109314.1, exon 2 of 2) sense_intronic-exon (ENSMUSG00000109314.1, exon 2 of 2) 17588 ENSMUSG00000109314.1 ENSMUSG00000109314 ENSMUST00000208229 Gm44699 sense_intronic Interval_9330 chr1 156302710 156303853 + 0 NA promoter-TSS (ENSMUSG00000060985.15) protein_coding-promoter-TSS (ENSMUSG00000060985.15) -208 ENSMUSG00000103705.1 ENSMUSG00000103705 ENSMUST00000195064 4930518J20Rik antisense Interval_77495 chr17 90242791 90245141 + 0 NA intron (ENSMUSG00000024109.18, intron 2 of 2) protein_coding-intron (ENSMUSG00000024109.18, intron 16 of 20) -18586 ENSMUSG00000092706.1 ENSMUSG00000092706 ENSMUST00000174965 Gm24510 miRNA Interval_155823 chr8 39435477 39436265 + 0 NA Intergenic Intergenic -20039 ENSMUSG00000110118.1 ENSMUSG00000110118 ENSMUST00000210008 Gm5609 processed_pseudogene Interval_12041 chr1 189026812 189028474 + 0 NA Intergenic Intergenic -19802 ENSMUSG00000026608.13 ENSMUSG00000026608 ENSMUST00000193273 Kctd3 protein_coding Interval_93044 chr2 69768720 69769100 + 0 NA intron (ENSMUSG00000070883.3, intron 7 of 8) protein_coding-intron (ENSMUSG00000070883.3, intron 7 of 8) 2728 ENSMUSG00000083007.1 ENSMUSG00000083007 ENSMUST00000118359 Gm13623 processed_pseudogene Interval_62783 chr15 96936617 96937406 + 0 NA Intergenic Intergenic -13606 ENSMUSG00000116202.1 ENSMUSG00000116202 ENSMUST00000229718 Rpl10a-ps3 processed_pseudogene Interval_83817 chr19 4849442 4851131 + 0 NA Intergenic Intergenic -9095 ENSMUSG00000083282.3 ENSMUSG00000083282 ENSMUST00000235354 Ctsf protein_coding Interval_75780 chr17 71310103 71312716 + 0 NA promoter-TSS (ENSMUSG00000024053.11) protein_coding-promoter-TSS (ENSMUSG00000024053.11) -1128 ENSMUSG00000024053.11 ENSMUSG00000024053 ENSMUST00000233659 Emilin2 protein_coding Interval_141634 chr6 131574908 131575424 + 0 NA Intergenic Intergenic -9944 ENSMUSG00000089792.3 ENSMUSG00000089792 ENSMUST00000159112 Gm16571 transcribed_unprocessed_pseudogene Interval_103952 chr3 55430000 55430488 + 0 NA intron (ENSMUSG00000027797.15, intron 2 of 4) protein_coding-intron (ENSMUSG00000027797.15, intron 4 of 16) -29220 ENSMUSG00000105975.4 ENSMUSG00000105975 ENSMUST00000196877 Gm42609 antisense Interval_147596 chr7 68834250 68834669 + 0 NA Intergenic Intergenic 81549 ENSMUSG00000109407.1 ENSMUSG00000109407 ENSMUST00000208180 Gm34664 lincRNA Interval_63043 chr15 98797051 98797246 + 0 NA Intergenic Intergenic 7291 ENSMUSG00000022997.9 ENSMUSG00000022997 ENSMUST00000023734 Wnt1 protein_coding Interval_63362 chr15 100617738 100618028 + 0 NA TTS (ENSMUSG00000000346.9) protein_coding-TTS (ENSMUSG00000000346.9) 1949 ENSMUSG00000000346.9 ENSMUSG00000000346 ENSMUST00000230384 Dazap2 protein_coding Interval_114229 chr4 69163899 69164548 + 0 NA Intergenic Intergenic 53552 ENSMUSG00000065815.1 ENSMUSG00000065815 ENSMUST00000083881 Gm24697 snRNA Interval_137268 chr6 70911217 70912922 + 0 NA Intergenic Intergenic 6858 ENSMUSG00000051896.4 ENSMUSG00000051896 ENSMUST00000063456 Tex37 protein_coding Interval_61807 chr15 84283827 84284485 + 0 NA intron (ENSMUSG00000022438.6, intron 4 of 4) protein_coding-intron (ENSMUSG00000022438.6, intron 4 of 12) 27016 ENSMUSG00000022438.6 ENSMUSG00000022438 ENSMUST00000131158 Parvb protein_coding Interval_165168 chr9 44965071 44967875 + 0 NA promoter-TSS (ENSMUSG00000059890.16) protein_coding-promoter-TSS (ENSMUSG00000059890.16) -935 ENSMUSG00000059890.16 ENSMUSG00000059890 ENSMUST00000155400 Ube4a protein_coding Interval_165113 chr9 44637227 44638770 + 0 NA exon (ENSMUSG00000032097.10, exon 14 of 14) protein_coding-exon (ENSMUSG00000032097.10, exon 14 of 14) 3803 ENSMUSG00000111030.1 ENSMUSG00000111030 ENSMUST00000217540 Gm47234 TEC Interval_111036 chr4 11394406 11394855 + 0 NA Intergenic Intergenic -5716 ENSMUSG00000081884.1 ENSMUSG00000081884 ENSMUST00000117335 Gm11821 processed_pseudogene Interval_16354 chr10 62425609 62426116 + 0 NA Intergenic Intergenic -3454 ENSMUSG00000020080.8 ENSMUSG00000020080 ENSMUST00000159579 Hkdc1 protein_coding Interval_43453 chr13 31291865 31293787 + 0 NA Intergenic Intergenic 37941 ENSMUSG00000087662.2 ENSMUSG00000087662 ENSMUST00000129791 Gm11373 lincRNA Interval_33830 chr11 118800216 118800473 + 0 NA intron (ENSMUSG00000025576.17, intron 2 of 14) protein_coding-intron (ENSMUSG00000025576.17, intron 2 of 14) 8972 ENSMUSG00000085059.1 ENSMUSG00000085059 ENSMUST00000146016 Gm11750 lincRNA Interval_41638 chr12 117273146 117274209 + 0 NA intron (ENSMUSG00000056553.14, intron 22 of 22) protein_coding-intron (ENSMUSG00000056553.14, intron 22 of 22) 22860 ENSMUSG00000065538.1 ENSMUSG00000065538 ENSMUST00000083604 Mir153 miRNA Interval_174551 chrX 157588092 157588730 + 0 NA intron (ENSMUSG00000046873.18, intron 3 of 5) protein_coding-intron (ENSMUSG00000046873.18, intron 3 of 10) 10239 ENSMUSG00000046873.18 ENSMUSG00000046873 ENSMUST00000152826 Mbtps2 protein_coding Interval_22363 chr11 9145684 9146640 + 0 NA Intergenic Intergenic 4435 ENSMUSG00000101841.1 ENSMUSG00000101841 ENSMUST00000121861 Gm11993 processed_pseudogene Interval_138261 chr6 86694455 86694948 + 0 NA intron (ENSMUSG00000001157.13, intron 13 of 13) protein_coding-intron (ENSMUSG00000001157.13, intron 13 of 13) -6273 ENSMUSG00000108197.1 ENSMUSG00000108197 ENSMUST00000204153 Gm44214 lincRNA Interval_28054 chr11 72518463 72518911 + 0 NA intron (ENSMUSG00000020798.14, intron 8 of 11) protein_coding-intron (ENSMUSG00000020798.14, intron 7 of 10) -16244 ENSMUSG00000020798.14 ENSMUSG00000020798 ENSMUST00000021154 Spns3 protein_coding Interval_105392 chr3 85951736 85953418 + 0 NA Intergenic Intergenic 1689 ENSMUSG00000077517.1 ENSMUSG00000077517 ENSMUST00000104329 Gm25876 snoRNA Interval_154011 chr8 11863383 11863613 + 0 NA Intergenic Intergenic -10661 ENSMUSG00000109772.1 ENSMUSG00000109772 ENSMUST00000210446 Gm39132 lincRNA Interval_42739 chr13 18793891 18794681 + 0 NA intron (ENSMUSG00000041236.8, intron 3 of 7) protein_coding-intron (ENSMUSG00000041236.8, intron 6 of 28) 14443 ENSMUSG00000041236.8 ENSMUSG00000041236 ENSMUST00000222102 Vps41 protein_coding Interval_133800 chr6 12376807 12377209 + 0 NA intron (ENSMUSG00000032625.14, intron 13 of 27) protein_coding-intron (ENSMUSG00000032625.14, intron 13 of 27) -188510 ENSMUSG00000083794.1 ENSMUSG00000083794 ENSMUST00000118647 Gm16123 processed_pseudogene Interval_4563 chr1 75051700 75052660 + 0 NA Intergenic Intergenic 73020 ENSMUSG00000026162.7 ENSMUSG00000026162 ENSMUST00000188033 Nhej1 protein_coding Interval_9413 chr1 156920906 156922416 + 0 NA intron (ENSMUSG00000026594.14, intron 1 of 19) protein_coding-intron (ENSMUSG00000026594.14, intron 1 of 18) 17938 ENSMUSG00000026594.14 ENSMUSG00000026594 ENSMUST00000189648 Ralgps2 protein_coding Interval_50362 chr14 12065636 12066407 + 0 NA intron (ENSMUSG00000021745.14, intron 5 of 29) protein_coding-intron (ENSMUSG00000021745.14, intron 5 of 29) -84813 ENSMUSG00000085883.2 ENSMUSG00000085883 ENSMUST00000151564 Gm3848 antisense Interval_99951 chr2 166059586 166060564 + 0 NA promoter-TSS (ENSMUSG00000027678.17) protein_coding-promoter-TSS (ENSMUSG00000027678.17) 12157 ENSMUSG00000027678.17 ENSMUSG00000027678 ENSMUST00000139394 Ncoa3 protein_coding Interval_109960 chr3 152180917 152181377 + 0 NA intron (ENSMUSG00000028035.13, intron 1 of 1) protein_coding-intron (ENSMUSG00000028035.13, intron 1 of 1) 15773 ENSMUSG00000097293.1 ENSMUSG00000097293 ENSMUST00000181854 D630002J18Rik TEC Interval_51366 chr14 27044161 27045475 + 0 NA intron (ENSMUSG00000040717.6, intron 1 of 12) protein_coding-intron (ENSMUSG00000040717.6, intron 1 of 12) -22579 ENSMUSG00000040717.6 ENSMUSG00000040717 ENSMUST00000225829 Il17rd protein_coding Interval_161096 chr8 117436288 117437456 + 0 NA exon (ENSMUSG00000034390.16, exon 10 of 21) protein_coding-exon (ENSMUSG00000034390.16, exon 10 of 21) 13456 ENSMUSG00000034390.16 ENSMUSG00000034390 ENSMUST00000212884 Cmip protein_coding Interval_160376 chr8 108811300 108811767 + 0 NA intron (ENSMUSG00000038872.10, intron 9 of 15) protein_coding-intron (ENSMUSG00000038872.10, intron 3 of 9) -56029 ENSMUSG00000102989.1 ENSMUSG00000102989 ENSMUST00000195769 Gm38318 TEC Interval_36673 chr12 51945195 51945761 + 0 NA exon (ENSMUSG00000035181.6, exon 11 of 36) protein_coding-exon (ENSMUSG00000035181.6, exon 11 of 36) -5528 ENSMUSG00000035181.6 ENSMUSG00000035181 ENSMUST00000219277 Heatr5a protein_coding Interval_15209 chr10 43377901 43378736 + 0 NA intron (ENSMUSG00000038240.13, intron 4 of 7) protein_coding-intron (ENSMUSG00000038240.13, intron 4 of 7) -4398 ENSMUSG00000089839.1 ENSMUSG00000089839 ENSMUST00000160308 Rps19-ps11 processed_pseudogene Interval_25650 chr11 50408676 50408887 + 0 NA intron (ENSMUSG00000020375.9, intron 2 of 3) protein_coding-intron (ENSMUSG00000020375.9, intron 8 of 17) 5794 ENSMUSG00000020375.9 ENSMUSG00000020375 ENSMUST00000129304 Rufy1 protein_coding Interval_13974 chr10 25206472 25208817 + 0 NA intron (ENSMUSG00000039166.16, intron 2 of 2) protein_coding-intron (ENSMUSG00000039166.16, intron 7 of 7) 13047 ENSMUSG00000039166.16 ENSMUSG00000039166 ENSMUST00000176231 Akap7 protein_coding Interval_68540 chr16 78502735 78502947 + 0 NA Intergenic Intergenic 13161 ENSMUSG00000116959.1 ENSMUSG00000116959 ENSMUST00000232118 Gm49604 TEC Interval_126205 chr5 82307102 82308258 + 0 NA Intergenic Intergenic -29171 ENSMUSG00000106926.1 ENSMUSG00000106926 ENSMUST00000200912 Rpl7-ps7 processed_pseudogene Interval_162990 chr9 14274707 14277058 + 0 NA promoter-TSS (ENSMUSG00000032009.8) protein_coding-promoter-TSS (ENSMUSG00000032009.8) 815 ENSMUSG00000032009.8 ENSMUSG00000032009 ENSMUST00000208142 Sesn3 protein_coding Interval_42062 chr13 7145645 7146315 + 0 NA intron (ENSMUSG00000113241.1, intron 3 of 3) lincRNA-intron (ENSMUSG00000113241.1, intron 3 of 3) 18355 ENSMUSG00000113241.1 ENSMUSG00000113241 ENSMUST00000221816 Gm40663 lincRNA Interval_15442 chr10 46722088 46722349 + 0 NA Intergenic Intergenic 52074 ENSMUSG00000111754.1 ENSMUSG00000111754 ENSMUST00000217086 Gm19994 processed_pseudogene Interval_79109 chr18 24629431 24630357 + 0 NA intron (ENSMUSG00000024271.8, intron 3 of 3) protein_coding-intron (ENSMUSG00000024271.8, intron 14 of 18) -23984 ENSMUSG00000039616.10 ENSMUSG00000039616 ENSMUST00000234253 Mocos protein_coding Interval_140383 chr6 117703827 117704236 + 0 NA intron (ENSMUSG00000099869.6, intron 2 of 4) lincRNA-intron (ENSMUSG00000099869.6, intron 2 of 3) -12442 ENSMUSG00000104222.1 ENSMUSG00000104222 ENSMUST00000195277 Gm7292 lincRNA Interval_89574 chr2 22924315 22924749 + 0 NA intron (ENSMUSG00000026784.14, intron 7 of 10) protein_coding-intron (ENSMUSG00000026784.14, intron 7 of 10) -10700 ENSMUSG00000081861.1 ENSMUSG00000081861 ENSMUST00000121960 Gm14441 processed_pseudogene Interval_63557 chr15 102027561 102028764 + 0 NA promoter-TSS (ENSMUSG00000023043.7) protein_coding-promoter-TSS (ENSMUSG00000023043.7) -18 ENSMUSG00000023043.7 ENSMUSG00000023043 ENSMUST00000023803 Krt18 protein_coding Interval_117420 chr4 123604058 123604262 + 0 NA intron (ENSMUSG00000028649.21, intron 1 of 97) protein_coding-intron (ENSMUSG00000028649.21, intron 1 of 92) 9583 ENSMUSG00000028649.21 ENSMUSG00000028649 ENSMUST00000146000 Macf1 protein_coding Interval_79587 chr18 33883276 33884049 + 0 NA intron (ENSMUSG00000024376.7, intron 3 of 5) protein_coding-intron (ENSMUSG00000024376.7, intron 5 of 23) 88498 ENSMUSG00000092819.1 ENSMUSG00000092819 ENSMUST00000175078 Gm23639 snoRNA Interval_110692 chr4 6491374 6491611 + 0 NA Intergenic Intergenic 16892 ENSMUSG00000081913.1 ENSMUSG00000081913 ENSMUST00000119966 Gm11803 processed_pseudogene Interval_566 chr1 7497732 7498050 + 0 NA promoter-TSS (ENSMUSG00000103067.1) lincRNA-promoter-TSS (ENSMUSG00000103067.1) -77 ENSMUSG00000103067.1 ENSMUSG00000103067 ENSMUST00000194886 Gm30414 lincRNA Interval_110918 chr4 10159100 10160225 + 0 NA Intergenic Intergenic 200308 ENSMUSG00000082501.1 ENSMUSG00000082501 ENSMUST00000120635 Gm11835 processed_pseudogene Interval_161780 chr8 122739259 122739838 + 0 NA intron (ENSMUSG00000110523.1, intron 1 of 2) protein_coding-intron (ENSMUSG00000092329.1, intron 1 of 15) 12777 ENSMUSG00000110523.1 ENSMUSG00000110523 ENSMUST00000212334 C230057M02Rik lincRNA Interval_24780 chr11 37411679 37412104 + 0 NA Intergenic Intergenic -247098 ENSMUSG00000087388.1 ENSMUSG00000087388 ENSMUST00000131013 Gm12128 lincRNA Interval_7082 chr1 125532886 125533785 + 0 NA Intergenic Intergenic -27260 ENSMUSG00000026342.10 ENSMUSG00000026342 ENSMUST00000189443 Slc35f5 protein_coding Interval_120643 chr4 149853882 149855073 + 0 NA Intergenic Intergenic 36713 ENSMUSG00000106221.1 ENSMUSG00000106221 ENSMUST00000199807 Gm47301 miRNA Interval_164354 chr9 35641634 35642372 + 0 NA intron (ENSMUSG00000074452.13, intron 4 of 10) protein_coding-intron (ENSMUSG00000074452.13, intron 4 of 10) 6199 ENSMUSG00000094995.2 ENSMUSG00000094995 ENSMUST00000178236 Pate3 protein_coding Interval_71817 chr17 26284109 26284340 + 0 NA exon (ENSMUSG00000024188.16, exon 10 of 10) protein_coding-exon (ENSMUSG00000024188.16, exon 10 of 10) 2837 ENSMUSG00000084893.3 ENSMUSG00000084893 ENSMUST00000128900 Hba-ps4 unprocessed_pseudogene Interval_87497 chr19 53057862 53059421 + 0 NA intron (ENSMUSG00000099988.7, intron 1 of 2) processed_transcript-intron (ENSMUSG00000099988.7, intron 1 of 2) -17602 ENSMUSG00000099988.7 ENSMUSG00000099988 ENSMUST00000236249 1700054A03Rik processed_transcript Interval_160133 chr8 106640261 106640780 + 0 NA intron (ENSMUSG00000000303.12, intron 2 of 16) protein_coding-intron (ENSMUSG00000000303.12, intron 2 of 15) 37141 ENSMUSG00000000303.12 ENSMUSG00000000303 ENSMUST00000136580 Cdh1 protein_coding Interval_133537 chr6 6212386 6213267 + 0 NA intron (ENSMUSG00000015112.15, intron 1 of 17) protein_coding-intron (ENSMUSG00000015112.15, intron 1 of 17) -35833 ENSMUSG00000093482.8 ENSMUSG00000093482 ENSMUST00000181343 Gm20619 lincRNA Interval_70148 chr17 5819826 5820091 + 0 NA Intergenic Intergenic 2486 ENSMUSG00000097186.1 ENSMUSG00000097186 ENSMUST00000181585 Gm26595 processed_pseudogene Interval_37694 chr12 71136159 71137466 + 0 NA promoter-TSS (ENSMUSG00000021079.16) protein_coding-promoter-TSS (ENSMUSG00000021079.16) -36 ENSMUSG00000034601.17 ENSMUSG00000034601 ENSMUST00000134748 2700049A03Rik protein_coding Interval_102163 chr3 19045913 19046137 + 0 NA Intergenic Intergenic 97874 ENSMUSG00000103135.1 ENSMUSG00000103135 ENSMUST00000193065 Gm37979 TEC Interval_85847 chr19 32327916 32329106 + 0 NA intron (ENSMUSG00000040451.18, intron 2 of 2) protein_coding-intron (ENSMUSG00000040451.18, intron 2 of 9) -51547 ENSMUSG00000040451.18 ENSMUSG00000040451 ENSMUST00000141252 Sgms1 protein_coding Interval_58100 chr15 27899075 27899500 + 0 NA intron (ENSMUSG00000022263.10, intron 5 of 35) protein_coding-intron (ENSMUSG00000022263.10, intron 6 of 56) -32056 ENSMUSG00000115161.1 ENSMUSG00000115161 ENSMUST00000228406 Gm20555 TEC Interval_135953 chr6 49068525 49068861 + 0 NA intron (ENSMUSG00000029816.10, intron 10 of 10) protein_coding-intron (ENSMUSG00000029816.10, intron 10 of 10) -2937 ENSMUSG00000107758.1 ENSMUSG00000107758 ENSMUST00000204279 Gm19253 processed_pseudogene Interval_105818 chr3 89490673 89491263 + 0 NA Intergenic Intergenic 36427 ENSMUSG00000027952.16 ENSMUSG00000027952 ENSMUST00000184515 Pmvk protein_coding Interval_85965 chr19 34252422 34252785 + 0 NA intron (ENSMUSG00000035783.9, intron 1 of 8) protein_coding-intron (ENSMUSG00000035783.9, intron 1 of 8) 1627 ENSMUSG00000035783.9 ENSMUSG00000035783 ENSMUST00000238147 Acta2 protein_coding Interval_129724 chr5 121972592 121973655 + 0 NA intron (ENSMUSG00000042589.18, intron 1 of 6) protein_coding-intron (ENSMUSG00000042589.18, intron 2 of 22) -52207 ENSMUSG00000105795.1 ENSMUSG00000105795 ENSMUST00000198001 Gm3970 antisense Interval_56425 chr14 118665772 118666051 + 0 NA intron (ENSMUSG00000032849.14, intron 3 of 30) protein_coding-intron (ENSMUSG00000032849.14, intron 3 of 30) 33581 ENSMUSG00000032849.14 ENSMUSG00000032849 ENSMUST00000227480 Abcc4 protein_coding Interval_103534 chr3 47660545 47661400 + 0 NA Intergenic Intergenic -200634 ENSMUSG00000103798.1 ENSMUSG00000103798 ENSMUST00000193328 Gm2229 processed_pseudogene Interval_15731 chr10 54997122 54997440 + 0 NA Intergenic Intergenic -59912 ENSMUSG00000112575.1 ENSMUSG00000112575 ENSMUST00000220306 Gm31849 processed_pseudogene Interval_174309 chrX 144310870 144311906 + 0 NA Intergenic Intergenic -6416 ENSMUSG00000041718.16 ENSMUSG00000041718 ENSMUST00000149811 Alg13 protein_coding Interval_127084 chr5 100175777 100176013 + 0 NA Intergenic Intergenic -16325 ENSMUSG00000050640.16 ENSMUSG00000050640 ENSMUST00000139520 Tmem150c protein_coding Interval_60117 chr15 65875401 65876313 + 0 NA TTS (ENSMUSG00000015001.17) protein_coding-TTS (ENSMUSG00000015001.17) 17988 ENSMUSG00000092495.1 ENSMUSG00000092495 ENSMUST00000174002 Gm20405 processed_transcript Interval_57426 chr15 10706431 10707716 + 0 NA intron (ENSMUSG00000022246.14, intron 1 of 1) protein_coding-intron (ENSMUSG00000022246.14, intron 1 of 17) 7025 ENSMUSG00000022246.14 ENSMUSG00000022246 ENSMUST00000227366 Rai14 protein_coding Interval_163416 chr9 21352332 21353843 + 0 NA exon (ENSMUSG00000057193.8, exon 4 of 5) protein_coding-exon (ENSMUSG00000057193.8, exon 4 of 5) 16097 ENSMUSG00000110915.1 ENSMUSG00000110915 ENSMUST00000217490 Gm36198 antisense Interval_99493 chr2 162520443 162521004 + 0 NA intron (ENSMUSG00000053141.16, intron 1 of 29) protein_coding-intron (ENSMUSG00000053141.16, intron 1 of 30) 129910 ENSMUSG00000084919.1 ENSMUSG00000084919 ENSMUST00000151688 Ptprtos antisense Interval_72966 chr17 33863522 33863844 + 0 NA intron (ENSMUSG00000092571.1, intron 1 of 2) unprocessed_pseudogene-intron (ENSMUSG00000092571.1, intron 1 of 2) 545 ENSMUSG00000092571.1 ENSMUSG00000092571 ENSMUST00000173244 Gm4134 unprocessed_pseudogene Interval_149082 chr7 92965051 92965502 + 0 NA Intergenic Intergenic -14600 ENSMUSG00000108994.1 ENSMUSG00000108994 ENSMUST00000207656 Gm31663 transcribed_unprocessed_pseudogene Interval_123404 chr5 32274512 32275432 + 0 NA intron (ENSMUSG00000029134.14, intron 8 of 38) protein_coding-intron (ENSMUSG00000029134.14, intron 8 of 57) 37147 ENSMUSG00000081200.1 ENSMUSG00000081200 ENSMUST00000118876 Gm15615 processed_pseudogene Interval_154633 chr8 22174734 22174966 + 0 NA exon (ENSMUSG00000037725.8, exon 2 of 2) protein_coding-exon (ENSMUSG00000037725.8, exon 2 of 2) -4681 ENSMUSG00000037725.8 ENSMUSG00000037725 ENSMUST00000211045 Ckap2 protein_coding Interval_111258 chr4 16087480 16089472 + 0 NA Intergenic Intergenic 32412 ENSMUSG00000081679.1 ENSMUSG00000081679 ENSMUST00000117437 Gm11874 processed_pseudogene Interval_26684 chr11 59680902 59681091 + 0 NA intron (ENSMUSG00000005417.17, intron 1 of 23) protein_coding-intron (ENSMUSG00000005417.17, intron 1 of 22) 59158 ENSMUSG00000086330.7 ENSMUSG00000086330 ENSMUST00000153431 1700007J10Rik processed_transcript Interval_173642 chrX 101395888 101397296 + 0 NA Intergenic Intergenic 12856 ENSMUSG00000047797.14 ENSMUSG00000047797 ENSMUST00000119190 Gjb1 protein_coding Interval_99691 chr2 164333371 164333761 + 0 NA exon (ENSMUSG00000017004.7, exon 2 of 3) protein_coding-exon (ENSMUSG00000017004.7, exon 2 of 3) 116 ENSMUSG00000017004.7 ENSMUSG00000017004 ENSMUST00000149370 Svs5 protein_coding Interval_19974 chr10 111620179 111620366 + 0 NA Intergenic Intergenic 21095 ENSMUSG00000112249.1 ENSMUSG00000112249 ENSMUST00000219137 Gm30262 lincRNA Interval_139012 chr6 94203227 94203430 + 0 NA intron (ENSMUSG00000045095.16, intron 2 of 2) protein_coding-intron (ENSMUSG00000045095.16, intron 1 of 21) 120706 ENSMUSG00000107545.1 ENSMUSG00000107545 ENSMUST00000204466 Gm44307 processed_pseudogene Interval_17224 chr10 75106937 75107234 + 0 NA intron (ENSMUSG00000009681.10, intron 1 of 22) protein_coding-intron (ENSMUSG00000009681.10, intron 1 of 22) -69291 ENSMUSG00000009681.10 ENSMUSG00000009681 ENSMUST00000219807 Bcr protein_coding Interval_114873 chr4 86611478 86612939 + 0 NA promoter-TSS (ENSMUSG00000038047.18) protein_coding-promoter-TSS (ENSMUSG00000038047.18) -153 ENSMUSG00000038047.18 ENSMUSG00000038047 ENSMUST00000125481 Haus6 protein_coding Interval_76703 chr17 83589120 83590052 + 0 NA intron (ENSMUSG00000045053.2, intron 1 of 1) protein_coding-intron (ENSMUSG00000045053.2, intron 1 of 1) 42309 ENSMUSG00000045053.2 ENSMUSG00000045053 ENSMUST00000051482 Kcng3 protein_coding Interval_106260 chr3 94974080 94975582 + 0 NA promoter-TSS (ENSMUSG00000038861.14) protein_coding-promoter-TSS (ENSMUSG00000038861.14) 0 ENSMUSG00000038861.14 ENSMUSG00000038861 ENSMUST00000133166 Pi4kb protein_coding Interval_78909 chr18 21436844 21437252 + 0 NA Intergenic Intergenic -56117 ENSMUSG00000096341.1 ENSMUSG00000096341 ENSMUST00000093714 Gm22886 snRNA Interval_65241 chr16 20791038 20792701 + 0 NA Intergenic Intergenic 5904 ENSMUSG00000116776.1 ENSMUSG00000116776 ENSMUST00000232027 Gm46544 processed_pseudogene Interval_103384 chr3 41067970 41068197 + 0 NA TTS (ENSMUSG00000049940.7) protein_coding-TTS (ENSMUSG00000049940.7) 2587 ENSMUSG00000049940.7 ENSMUSG00000049940 ENSMUST00000124636 Pgrmc2 protein_coding Interval_22727 chr11 14040870 14041906 + 0 NA Intergenic Intergenic -120691 ENSMUSG00000081631.1 ENSMUSG00000081631 ENSMUST00000121451 Gm12005 processed_pseudogene Interval_69542 chr16 94128391 94128878 + 0 NA TTS (ENSMUSG00000040820.16) protein_coding-TTS (ENSMUSG00000040820.16) 40777 ENSMUSG00000076304.1 ENSMUSG00000076304 ENSMUST00000102349 Gm23062 miRNA Interval_111861 chr4 32057014 32057564 + 0 NA Intergenic Intergenic 5551 ENSMUSG00000082398.1 ENSMUSG00000082398 ENSMUST00000118472 Gm11927 processed_pseudogene Interval_40636 chr12 106184935 106185666 + 0 NA Intergenic Intergenic -35775 ENSMUSG00000077640.1 ENSMUSG00000077640 ENSMUST00000104452 Gm24986 snoRNA Interval_98178 chr2 149468416 149469038 + 0 NA Intergenic Intergenic 63394 ENSMUSG00000033156.9 ENSMUSG00000033156 ENSMUST00000109939 Cst10 protein_coding Interval_155668 chr8 35956312 35956996 + 0 NA Intergenic Intergenic 20924 ENSMUSG00000080592.1 ENSMUSG00000080592 ENSMUST00000116942 Gm22030 miRNA Interval_6415 chr1 107482654 107482823 + 0 NA Intergenic Intergenic -41206 ENSMUSG00000062345.10 ENSMUSG00000062345 ENSMUST00000146597 Serpinb2 protein_coding Interval_6205 chr1 101744099 101744479 + 0 NA Intergenic Intergenic 10254 ENSMUSG00000100065.1 ENSMUSG00000100065 ENSMUST00000189423 Gm18969 processed_pseudogene Interval_94273 chr2 87326244 87326584 + 0 NA Intergenic Intergenic -2418 ENSMUSG00000083211.1 ENSMUSG00000083211 ENSMUST00000119793 Gm13737 processed_pseudogene Interval_132080 chr5 142673309 142673629 + 0 NA Intergenic Intergenic -19043 ENSMUSG00000050822.11 ENSMUSG00000050822 ENSMUST00000058418 Slc29a4 protein_coding Interval_77462 chr17 89153989 89154606 + 0 NA intron (ENSMUSG00000032937.5, intron 1 of 9) protein_coding-intron (ENSMUSG00000032937.5, intron 1 of 9) 46378 ENSMUSG00000032937.5 ENSMUSG00000032937 ENSMUST00000035701 Fshr protein_coding Interval_101873 chr3 10312894 10313286 + 0 NA TTS (ENSMUSG00000027531.16) protein_coding-TTS (ENSMUSG00000027531.16) 3562 ENSMUSG00000027531.16 ENSMUSG00000027531 ENSMUST00000128912 Impa1 protein_coding Interval_81005 chr18 52638614 52639136 + 0 NA exon (ENSMUSG00000046886.6, exon 2 of 2) protein_coding-exon (ENSMUSG00000046886.6, exon 2 of 2) -7334 ENSMUSG00000024532.13 ENSMUSG00000024532 ENSMUST00000091904 1700034E13Rik protein_coding Interval_76351 chr17 79354409 79356265 + 0 NA promoter-TSS (ENSMUSG00000036533.9) protein_coding-promoter-TSS (ENSMUSG00000036533.9) 638 ENSMUSG00000118651.1 ENSMUSG00000118651 ENSMUST00000239444 CT030740.1 antisense Interval_6616 chr1 118335545 118336240 + 0 NA Intergenic Intergenic 13740 ENSMUSG00000026377.12 ENSMUSG00000026377 ENSMUST00000161495 Nifk protein_coding Interval_117768 chr4 126123304 126123513 + 0 NA intron (ENSMUSG00000042608.15, intron 1 of 4) protein_coding-intron (ENSMUSG00000042608.15, intron 1 of 10) 19407 ENSMUSG00000042608.15 ENSMUSG00000042608 ENSMUST00000134369 Stk40 protein_coding Interval_32354 chr11 107118489 107119266 + 0 NA intron (ENSMUSG00000040481.17, intron 1 of 29) protein_coding-intron (ENSMUSG00000040481.17, intron 1 of 27) -38531 ENSMUSG00000087596.1 ENSMUSG00000087596 ENSMUST00000129501 Gm11715 antisense Interval_167316 chr9 67273013 67273598 + 0 NA intron (ENSMUSG00000052698.15, intron 17 of 31) protein_coding-intron (ENSMUSG00000052698.15, intron 43 of 57) -36579 ENSMUSG00000076379.2 ENSMUSG00000076379 ENSMUST00000102424 Mir190a miRNA Interval_159966 chr8 105460895 105461627 + 0 NA intron (ENSMUSG00000054320.16, intron 13 of 13) protein_coding-intron (ENSMUSG00000054320.16, intron 10 of 10) 8149 ENSMUSG00000014846.12 ENSMUSG00000014846 ENSMUST00000176419 Tppp3 protein_coding Interval_125488 chr5 67583084 67583515 + 0 NA Intergenic Intergenic 24527 ENSMUSG00000106947.1 ENSMUSG00000106947 ENSMUST00000200753 1700025A08Rik TEC Interval_143305 chr7 5051239 5054215 + 0 NA intron (ENSMUSG00000055633.6, intron 1 of 1) protein_coding-intron (ENSMUSG00000055633.6, intron 1 of 1) 738 ENSMUSG00000055633.6 ENSMUSG00000055633 ENSMUST00000208570 Zfp580 protein_coding Interval_67762 chr16 56940142 56941336 + 0 NA Intergenic Intergenic -12678 ENSMUSG00000109588.1 ENSMUSG00000109588 ENSMUST00000210579 Lnp1 protein_coding Interval_84887 chr19 18619866 18620773 + 0 NA intron (ENSMUSG00000024725.13, intron 1 of 10) protein_coding-intron (ENSMUSG00000024725.13, intron 1 of 9) 11470 ENSMUSG00000024725.13 ENSMUSG00000024725 ENSMUST00000138860 Ostf1 protein_coding Interval_87871 chr19 56740980 56741574 + 0 NA TTS (ENSMUSG00000117696.1) lincRNA-TTS (ENSMUSG00000117696.1) 5487 ENSMUSG00000117696.1 ENSMUSG00000117696 ENSMUST00000237116 Gm50100 lincRNA Interval_121002 chr4 152151719 152152552 + 0 NA promoter-TSS (ENSMUSG00000028943.18) protein_coding-promoter-TSS (ENSMUSG00000028943.18) 87 ENSMUSG00000028943.18 ENSMUSG00000028943 ENSMUST00000148075 Espn protein_coding Interval_52657 chr14 48328874 48330141 + 0 NA Intergenic Intergenic 33108 ENSMUSG00000114991.1 ENSMUSG00000114991 ENSMUST00000228144 1700128I11Rik lincRNA Interval_51249 chr14 25535366 25535637 + 0 NA TTS (ENSMUSG00000093081.1) miRNA-TTS (ENSMUSG00000093081.1) 1062 ENSMUSG00000093081.1 ENSMUSG00000093081 ENSMUST00000175340 Mir3075 miRNA Interval_143294 chr7 4995509 4997182 + 0 NA promoter-TSS (ENSMUSG00000051550.10) protein_coding-promoter-TSS (ENSMUSG00000051550.10) -1005 ENSMUSG00000051550.10 ENSMUSG00000051550 ENSMUST00000160808 Zfp579 protein_coding Interval_99286 chr2 158673833 158675188 + 0 NA intron (ENSMUSG00000037754.13, intron 1 of 10) protein_coding-intron (ENSMUSG00000037754.13, intron 1 of 10) -21625 ENSMUSG00000037754.13 ENSMUSG00000037754 ENSMUST00000145073 Ppp1r16b protein_coding Interval_52651 chr14 48251421 48252140 + 0 NA intron (ENSMUSG00000021846.9, intron 3 of 4) protein_coding-intron (ENSMUSG00000021846.9, intron 4 of 5) 24579 ENSMUSG00000063885.5 ENSMUSG00000063885 ENSMUST00000181413 Gm6498 transcribed_processed_pseudogene Interval_69145 chr16 90940597 90940891 + 0 NA intron (ENSMUSG00000022973.18, intron 31 of 32) protein_coding-intron (ENSMUSG00000022973.18, intron 31 of 32) 5777 ENSMUSG00000116607.1 ENSMUSG00000116607 ENSMUST00000232326 4930534H18Rik bidirectional_promoter_lncRNA Interval_32758 chr11 110378341 110378636 + 0 NA Intergenic Intergenic -40772 ENSMUSG00000018800.14 ENSMUSG00000018800 ENSMUST00000148984 Abca5 protein_coding Interval_142681 chr6 144991245 144991412 + 0 NA Intergenic Intergenic 46860 ENSMUSG00000088867.1 ENSMUSG00000088867 ENSMUST00000158242 Gm23071 rRNA Interval_58855 chr15 39222628 39223884 + 0 NA intron (ENSMUSG00000037386.16, intron 1 of 25) protein_coding-intron (ENSMUSG00000037386.16, intron 1 of 26) 42745 ENSMUSG00000098021.2 ENSMUSG00000098021 ENSMUST00000182394 Gm9522 processed_pseudogene Interval_55628 chr14 96533808 96534152 + 0 NA Intergenic Intergenic -14878 ENSMUSG00000022076.10 ENSMUSG00000022076 ENSMUST00000022666 Klhl1 protein_coding Interval_86744 chr19 43546509 43546737 + 0 NA exon (ENSMUSG00000117991.1, exon 3 of 3) lincRNA-exon (ENSMUSG00000117991.1, exon 3 of 3) 2440 ENSMUSG00000118308.1 ENSMUSG00000118308 ENSMUST00000236158 Gm19179 processed_pseudogene Interval_92938 chr2 68830816 68831658 + 0 NA exon (ENSMUSG00000082836.1, exon 1 of 1) processed_pseudogene-exon (ENSMUSG00000082836.1, exon 1 of 1) 220 ENSMUSG00000082836.1 ENSMUSG00000082836 ENSMUST00000119276 Gm13612 processed_pseudogene Interval_32460 chr11 107670206 107670637 + 0 NA promoter-TSS (ENSMUSG00000020721.16) protein_coding-promoter-TSS (ENSMUSG00000020721.16) -631 ENSMUSG00000020721.16 ENSMUSG00000020721 ENSMUST00000153080 Helz protein_coding Interval_56089 chr14 105538969 105539227 + 0 NA Intergenic Intergenic 21002 ENSMUSG00000115386.1 ENSMUSG00000115386 ENSMUST00000226350 Gm35909 lincRNA Interval_92313 chr2 58611867 58612387 + 0 NA intron (ENSMUSG00000026839.17, intron 1 of 3) protein_coding-intron (ENSMUSG00000026839.17, intron 1 of 7) -20954 ENSMUSG00000026839.17 ENSMUSG00000026839 ENSMUST00000128864 Upp2 protein_coding Interval_155799 chr8 38725320 38725826 + 0 NA Intergenic Intergenic 12979 ENSMUSG00000118594.1 ENSMUSG00000118594 ENSMUST00000239372 AC163680.1 unprocessed_pseudogene Interval_50557 chr14 15297723 15297999 + 0 NA TTS (ENSMUSG00000114683.1) processed_pseudogene-TTS (ENSMUSG00000114683.1) 1000 ENSMUSG00000114683.1 ENSMUSG00000114683 ENSMUST00000225826 Gm47763 processed_pseudogene Interval_17435 chr10 76664130 76664860 + 0 NA Intergenic Intergenic -19937 ENSMUSG00000112721.1 ENSMUSG00000112721 ENSMUST00000218472 Gm35608 lincRNA Interval_96073 chr2 119609309 119609860 + 0 NA TTS (ENSMUSG00000072980.3) protein_coding-TTS (ENSMUSG00000072980.3) 8885 ENSMUSG00000072980.3 ENSMUSG00000072980 ENSMUST00000123818 Oip5 protein_coding Interval_89165 chr2 17786810 17787063 + 0 NA Intergenic Intergenic 11048 ENSMUSG00000081851.1 ENSMUSG00000081851 ENSMUST00000120245 Gm13323 processed_pseudogene Interval_123493 chr5 32913362 32914363 + 0 NA TTS (ENSMUSG00000089080.1) snRNA-TTS (ENSMUSG00000089080.1) 231 ENSMUSG00000089080.1 ENSMUSG00000089080 ENSMUST00000158455 Gm24003 snRNA Interval_161149 chr8 117795824 117796501 + 0 NA intron (ENSMUSG00000031843.2, intron 2 of 2) protein_coding-intron (ENSMUSG00000031843.2, intron 2 of 4) -2945 ENSMUSG00000031843.2 ENSMUSG00000031843 ENSMUST00000211818 Mphosph6 protein_coding Interval_76972 chr17 85272849 85273324 + 0 NA intron (ENSMUSG00000071037.6, intron 3 of 10) protein_coding-intron (ENSMUSG00000071037.6, intron 3 of 10) 182480 ENSMUSG00000071037.6 ENSMUSG00000071037 ENSMUST00000234501 Camkmt protein_coding Interval_48470 chr13 99275735 99276014 + 0 NA Intergenic Intergenic 68831 ENSMUSG00000021650.7 ENSMUSG00000021650 ENSMUST00000022153 Ptcd2 protein_coding Interval_73239 chr17 35725162 35726090 + 0 NA Intergenic Intergenic 14180 ENSMUSG00000092219.1 ENSMUSG00000092219 ENSMUST00000173840 Gm20443 lincRNA Interval_69787 chr16 96338773 96339264 + 0 NA Intergenic Intergenic -22776 ENSMUSG00000117081.1 ENSMUSG00000117081 ENSMUST00000113795 Gm49948 protein_coding Interval_132831 chr5 148191157 148192269 + 0 NA intron (ENSMUSG00000029651.16, intron 2 of 3) protein_coding-intron (ENSMUSG00000029651.16, intron 4 of 14) -7336 ENSMUSG00000066554.6 ENSMUSG00000066554 ENSMUST00000150411 Gm10167 processed_pseudogene Interval_137514 chr6 72837785 72839022 + 0 NA Intergenic Intergenic 57516 ENSMUSG00000107610.1 ENSMUSG00000107610 ENSMUST00000205107 D530018E20Rik TEC Interval_73867 chr17 44973232 44973711 + 0 NA intron (ENSMUSG00000038954.14, intron 2 of 10) protein_coding-intron (ENSMUSG00000038954.14, intron 3 of 11) -93176 ENSMUSG00000117326.1 ENSMUSG00000117326 ENSMUST00000233907 4930564C03Rik processed_pseudogene Interval_20079 chr10 113522335 113522872 + 0 NA Intergenic Intergenic -15420 ENSMUSG00000112750.1 ENSMUSG00000112750 ENSMUST00000219362 Gm47534 processed_pseudogene Interval_156215 chr8 46163056 46164161 + 0 NA promoter-TSS (ENSMUSG00000031631.15) protein_coding-promoter-TSS (ENSMUSG00000031631.15) 1518 ENSMUSG00000109902.1 ENSMUSG00000109902 ENSMUST00000211391 Gm45693 TEC Interval_99849 chr2 165287168 165288761 + 0 NA promoter-TSS (ENSMUSG00000017664.16) protein_coding-promoter-TSS (ENSMUSG00000017664.16) -129 ENSMUSG00000017664.16 ENSMUSG00000017664 ENSMUST00000130393 Slc35c2 protein_coding Interval_44786 chr13 48630873 48632159 + 0 NA Intergenic Intergenic -31482 ENSMUSG00000021381.4 ENSMUSG00000021381 ENSMUST00000021813 Barx1 protein_coding Interval_119700 chr4 139316475 139318251 + 0 NA TTS (ENSMUSG00000028743.7) protein_coding-TTS (ENSMUSG00000028743.7) 781 ENSMUSG00000028743.7 ENSMUSG00000028743 ENSMUST00000153645 Akr7a5 protein_coding Interval_118903 chr4 134378155 134380733 + 0 NA intron (ENSMUSG00000028838.11, intron 1 of 5) protein_coding-intron (ENSMUSG00000028838.11, intron 1 of 5) -14020 ENSMUSG00000028838.11 ENSMUSG00000028838 ENSMUST00000142730 Extl1 protein_coding Interval_115090 chr4 89523484 89525174 + 0 NA Intergenic Intergenic 79110 ENSMUSG00000098669.1 ENSMUSG00000098669 ENSMUST00000183666 Gm27580 misc_RNA Interval_142566 chr6 143326991 143329283 + 0 NA Intergenic Intergenic 82244 ENSMUSG00000072679.10 ENSMUSG00000072679 ENSMUST00000160951 D6Ertd474e lincRNA Interval_62200 chr15 88760380 88761195 + 0 NA intron (ENSMUSG00000034333.15, intron 2 of 2) protein_coding-intron (ENSMUSG00000034333.15, intron 2 of 2) 9027 ENSMUSG00000034333.15 ENSMUSG00000034333 ENSMUST00000160975 Zbed4 protein_coding Interval_127323 chr5 102874419 102876062 + 0 NA intron (ENSMUSG00000057315.14, intron 3 of 3) protein_coding-intron (ENSMUSG00000057315.14, intron 2 of 6) 66191 ENSMUSG00000057315.14 ENSMUSG00000057315 ENSMUST00000070000 Arhgap24 protein_coding Interval_64254 chr16 9853146 9853368 + 0 NA intron (ENSMUSG00000059003.12, intron 3 of 13) protein_coding-intron (ENSMUSG00000059003.12, intron 1 of 11) 141666 ENSMUSG00000059003.12 ENSMUSG00000059003 ENSMUST00000197242 Grin2a protein_coding Interval_46505 chr13 66697957 66699021 + 0 NA promoter-TSS (ENSMUSG00000074830.4) transcribed_processed_pseudogene-promoter-TSS (ENSMUSG00000074830.4) -10137 ENSMUSG00000114549.1 ENSMUSG00000114549 ENSMUST00000224860 Vmn2r-ps106 unprocessed_pseudogene Interval_148866 chr7 89470918 89471229 + 0 NA Intergenic Intergenic -38934 ENSMUSG00000030623.4 ENSMUSG00000030623 ENSMUST00000208814 Prss23os antisense Interval_101831 chr3 9821674 9821872 + 0 NA intron (ENSMUSG00000027508.15, intron 1 of 2) protein_coding-intron (ENSMUSG00000027508.15, intron 1 of 7) 7955 ENSMUSG00000088004.1 ENSMUSG00000088004 ENSMUST00000157379 Gm24786 rRNA Interval_50787 chr14 19838764 19840333 + 0 NA intron (ENSMUSG00000114350.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000114350.1, intron 1 of 2) 623 ENSMUSG00000114350.1 ENSMUSG00000114350 ENSMUST00000225736 D14Ertd670e lincRNA Interval_166946 chr9 64084680 64086352 + 0 NA intron (ENSMUSG00000093759.1, intron 1 of 2) processed_transcript-intron (ENSMUSG00000093759.1, intron 1 of 2) 4755 ENSMUSG00000093759.1 ENSMUSG00000093759 ENSMUST00000176950 Scarletltr processed_transcript Interval_3343 chr1 57293275 57293995 + 0 NA Intergenic Intergenic -1234 ENSMUSG00000101129.1 ENSMUSG00000101129 ENSMUST00000188353 Gm5254 processed_pseudogene Interval_6250 chr1 104686600 104686924 + 0 NA Intergenic Intergenic -53404 ENSMUSG00000099801.1 ENSMUSG00000099801 ENSMUST00000191059 Gm29011 processed_pseudogene Interval_78685 chr18 17282451 17282799 + 0 NA intron (ENSMUSG00000117460.1, intron 2 of 4) transcribed_processed_pseudogene-intron (ENSMUSG00000117460.1, intron 2 of 4) -47172 ENSMUSG00000117460.1 ENSMUSG00000117460 ENSMUST00000234739 4921533I20Rik transcribed_processed_pseudogene Interval_117526 chr4 124372681 124373037 + 0 NA Intergenic Intergenic -37178 ENSMUSG00000088933.1 ENSMUSG00000088933 ENSMUST00000158308 Gm22983 snRNA Interval_44718 chr13 47719368 47719659 + 0 NA Intergenic Intergenic 51963 ENSMUSG00000114509.1 ENSMUSG00000114509 ENSMUST00000223996 4930471G24Rik lincRNA Interval_60710 chr15 76292561 76295031 + 0 NA promoter-TSS (ENSMUSG00000071724.5) protein_coding-promoter-TSS (ENSMUSG00000071724.5) -1172 ENSMUSG00000071724.5 ENSMUSG00000071724 ENSMUST00000167433 Smpd5 protein_coding Interval_140835 chr6 122146468 122146843 + 0 NA intron (ENSMUSG00000071204.10, intron 5 of 8) transcribed_unprocessed_pseudogene-intron (ENSMUSG00000071204.10, intron 4 of 5) 9923 ENSMUSG00000071204.10 ENSMUSG00000071204 ENSMUST00000159439 Gm10319 transcribed_unprocessed_pseudogene Interval_86191 chr19 37670276 37670461 + 0 NA intron (ENSMUSG00000053799.8, intron 21 of 22) protein_coding-intron (ENSMUSG00000053799.8, intron 20 of 21) -15213 ENSMUSG00000062432.4 ENSMUSG00000062432 ENSMUST00000073391 Cyp26c1 protein_coding Interval_2377 chr1 38787186 38787876 + 0 NA Intergenic Intergenic 20347 ENSMUSG00000103531.1 ENSMUSG00000103531 ENSMUST00000192930 2610300A13Rik TEC Interval_26958 chr11 61842497 61843501 + 0 NA intron (ENSMUSG00000004798.14, intron 3 of 24) protein_coding-intron (ENSMUSG00000004798.14, intron 3 of 26) -22476 ENSMUSG00000098196.1 ENSMUSG00000098196 ENSMUST00000182516 Gm26964 lincRNA Interval_149911 chr7 102506538 102507441 + 0 NA Intergenic Intergenic -7424 ENSMUSG00000044824.8 ENSMUSG00000044824 ENSMUST00000058750 Olfr545 protein_coding Interval_143234 chr7 4658298 4659564 + 0 NA promoter-TSS (ENSMUSG00000052296.7) protein_coding-promoter-TSS (ENSMUSG00000052296.7) 271 ENSMUSG00000108477.1 ENSMUSG00000108477 ENSMUST00000205812 Gm44878 TEC Interval_83746 chr19 4349842 4350064 + 0 NA TTS (ENSMUSG00000054611.17) protein_coding-TTS (ENSMUSG00000054611.17) -21542 ENSMUSG00000054611.17 ENSMUSG00000054611 ENSMUST00000176495 Kdm2a protein_coding Interval_162719 chr9 7989372 7989834 + 0 NA intron (ENSMUSG00000053110.13, intron 1 of 7) protein_coding-intron (ENSMUSG00000053110.13, intron 2 of 8) 12100 ENSMUSG00000053110.13 ENSMUSG00000053110 ENSMUST00000174300 Yap1 protein_coding Interval_141380 chr6 127845525 127845957 + 0 NA Intergenic Intergenic -3480 ENSMUSG00000088177.1 ENSMUSG00000088177 ENSMUST00000157552 Gm23098 misc_RNA Interval_68061 chr16 64805394 64805591 + 0 NA intron (ENSMUSG00000047141.5, intron 3 of 8) protein_coding-intron (ENSMUSG00000047141.5, intron 3 of 8) -38836 ENSMUSG00000059920.9 ENSMUSG00000059920 ENSMUST00000076991 4930453N24Rik protein_coding Interval_38287 chr12 76918252 76921200 + 0 NA intron (ENSMUSG00000033373.16, intron 13 of 13) protein_coding-intron (ENSMUSG00000033373.16, intron 11 of 11) 22067 ENSMUSG00000112008.1 ENSMUSG00000112008 ENSMUST00000218256 Gm47218 TEC Interval_127697 chr5 106780696 106781779 + 0 NA Intergenic Intergenic -42473 ENSMUSG00000106301.1 ENSMUSG00000106301 ENSMUST00000197334 Gm8365 processed_pseudogene Interval_113072 chr4 47490422 47492246 + 0 NA Intergenic Intergenic 16570 ENSMUSG00000053317.11 ENSMUSG00000053317 ENSMUST00000136685 Sec61b protein_coding Interval_68962 chr16 89718794 89719539 + 0 NA Intergenic Intergenic 76116 ENSMUSG00000002489.16 ENSMUSG00000002489 ENSMUST00000136760 Tiam1 protein_coding Interval_142409 chr6 141707599 141707904 + 0 NA TTS (ENSMUSG00000084927.1) protein_coding-TTS (ENSMUSG00000084927.1) 7340 ENSMUSG00000088865.1 ENSMUSG00000088865 ENSMUST00000158240 Gm23069 misc_RNA Interval_14675 chr10 38822443 38822686 + 0 NA promoter-TSS (ENSMUSG00000094311.1) protein_coding-promoter-TSS (ENSMUSG00000094311.1) -785 ENSMUSG00000094311.1 ENSMUSG00000094311 ENSMUST00000179279 Rfpl4b protein_coding Interval_112523 chr4 41811720 41812226 + 0 NA Intergenic Intergenic 2890 ENSMUSG00000082962.3 ENSMUSG00000082962 ENSMUST00000120436 Gm10601 unprocessed_pseudogene Interval_158129 chr8 79052858 79053361 + 0 NA intron (ENSMUSG00000071064.15, intron 1 of 13) protein_coding-intron (ENSMUSG00000071064.15, intron 1 of 2) 24522 ENSMUSG00000071064.15 ENSMUSG00000071064 ENSMUST00000129613 Zfp827 protein_coding Interval_94427 chr2 91138641 91140484 + 0 NA promoter-TSS (ENSMUSG00000040687.16) protein_coding-promoter-TSS (ENSMUSG00000040687.16) -306 ENSMUSG00000040687.16 ENSMUSG00000040687 ENSMUST00000150517 Madd protein_coding Interval_129760 chr5 122166560 122167637 + 0 NA exon (ENSMUSG00000105742.1, exon 1 of 1) TEC-exon (ENSMUSG00000105742.1, exon 1 of 1) 1501 ENSMUSG00000105742.1 ENSMUSG00000105742 ENSMUST00000199354 Gm42748 TEC Interval_8563 chr1 142694231 142694451 + 0 NA Intergenic Intergenic -28515 ENSMUSG00000103890.1 ENSMUSG00000103890 ENSMUST00000194218 Gm28724 processed_pseudogene Interval_32439 chr11 107546028 107548659 + 0 NA promoter-TSS (ENSMUSG00000020721.16) protein_coding-promoter-TSS (ENSMUSG00000020721.16) 1030 ENSMUSG00000059706.4 ENSMUSG00000059706 ENSMUST00000147445 A830035A12Rik processed_transcript Interval_124066 chr5 37971760 37972191 + 0 NA Intergenic Intergenic -11718 ENSMUSG00000107126.1 ENSMUSG00000107126 ENSMUST00000201470 Gm40289 lincRNA Interval_96797 chr2 128363911 128364813 + 0 NA intron (ENSMUSG00000074813.14, intron 1 of 3) lincRNA-intron (ENSMUSG00000074813.14, intron 1 of 1) -59292 ENSMUSG00000079053.3 ENSMUSG00000079053 ENSMUST00000131961 Gm14010 lincRNA Interval_129452 chr5 120269451 120269998 + 0 NA Intergenic Intergenic 14466 ENSMUSG00000106915.1 ENSMUSG00000106915 ENSMUST00000202782 Gm42655 TEC Interval_83716 chr19 3912288 3913422 + 0 NA promoter-TSS (ENSMUSG00000059734.7) protein_coding-promoter-TSS (ENSMUSG00000059734.7) -81 ENSMUSG00000059734.7 ENSMUSG00000059734 ENSMUST00000235301 Ndufs8 protein_coding Interval_131472 chr5 137445349 137446107 + 0 NA intron (ENSMUSG00000079173.11, intron 2 of 7) protein_coding-intron (ENSMUSG00000079173.11, intron 26 of 87) 12741 ENSMUSG00000106476.1 ENSMUSG00000106476 ENSMUST00000196458 Rpl36-ps9 processed_pseudogene Interval_130303 chr5 125512636 125513539 + 0 NA TTS (ENSMUSG00000029482.4) protein_coding-TTS (ENSMUSG00000029482.4) -2156 ENSMUSG00000029482.4 ENSMUSG00000029482 ENSMUST00000200286 Aacs protein_coding Interval_73456 chr17 37446335 37447184 + 0 NA TTS (ENSMUSG00000059687.4) protein_coding-TTS (ENSMUSG00000059687.4) 1279 ENSMUSG00000059687.4 ENSMUSG00000059687 ENSMUST00000218675 Olfr108 protein_coding Interval_814 chr1 11626674 11627308 + 0 NA intron (ENSMUSG00000057715.13, intron 7 of 12) protein_coding-intron (ENSMUSG00000057715.13, intron 7 of 13) -18591 ENSMUSG00000099845.1 ENSMUSG00000099845 ENSMUST00000188880 Gm29273 processed_pseudogene Interval_48275 chr13 97601530 97601969 + 0 NA Intergenic Intergenic -7787 ENSMUSG00000114599.1 ENSMUSG00000114599 ENSMUST00000225459 Gm48070 processed_pseudogene Interval_103684 chr3 51611848 51612639 + 0 NA Intergenic Intergenic 24685 ENSMUSG00000104166.1 ENSMUSG00000104166 ENSMUST00000194675 Gm38247 processed_pseudogene Interval_39767 chr12 97868858 97869065 + 0 NA TTS (ENSMUSG00000111885.1) lincRNA-TTS (ENSMUSG00000111885.1) 3559 ENSMUSG00000111885.1 ENSMUSG00000111885 ENSMUST00000218234 Gm35326 lincRNA Interval_135602 chr6 41308738 41309500 + 0 NA Intergenic Intergenic -2354 ENSMUSG00000103797.1 ENSMUSG00000103797 ENSMUST00000193013 Gm18964 processed_pseudogene Interval_54377 chr14 68044607 68045012 + 0 NA intron (ENSMUSG00000114621.1, intron 2 of 2) lincRNA-intron (ENSMUSG00000114621.1, intron 2 of 2) 6521 ENSMUSG00000114621.1 ENSMUSG00000114621 ENSMUST00000223853 Gm31107 lincRNA Interval_86653 chr19 42321760 42323048 + 0 NA intron (ENSMUSG00000042401.8, intron 4 of 14) protein_coding-intron (ENSMUSG00000042401.8, intron 4 of 14) -42234 ENSMUSG00000093234.1 ENSMUSG00000093234 ENSMUST00000175493 Mir3085 miRNA Interval_41259 chr12 112194767 112195906 + 0 NA Intergenic Intergenic 9817 ENSMUSG00000113282.1 ENSMUSG00000113282 ENSMUST00000220716 Gm20368 processed_pseudogene Interval_19527 chr10 102323716 102324154 + 0 NA intron (ENSMUSG00000019888.16, intron 4 of 8) protein_coding-intron (ENSMUSG00000019888.16, intron 1 of 5) 4322 ENSMUSG00000112342.1 ENSMUSG00000112342 ENSMUST00000219521 Gm47031 sense_intronic Interval_150509 chr7 111475608 111475900 + 0 NA intron (ENSMUSG00000038296.14, intron 10 of 10) protein_coding-intron (ENSMUSG00000038296.14, intron 10 of 10) -88422 ENSMUSG00000109867.1 ENSMUSG00000109867 ENSMUST00000209530 Gm5338 processed_pseudogene Interval_59486 chr15 54130619 54130946 + 0 NA Intergenic Intergenic -94800 ENSMUSG00000097938.1 ENSMUSG00000097938 ENSMUST00000182320 Gm26933 processed_pseudogene Interval_43038 chr13 23423475 23427181 + 0 NA Intergenic Intergenic -1462 ENSMUSG00000036376.3 ENSMUSG00000036376 ENSMUST00000041782 Abt1 protein_coding Interval_151088 chr7 118466739 118467034 + 0 NA Intergenic Intergenic -13609 ENSMUSG00000109167.1 ENSMUSG00000109167 ENSMUST00000208648 Gm44652 TEC Interval_97252 chr2 132648548 132649926 + 0 NA exon (ENSMUSG00000074783.10, exon 4 of 4) lincRNA-exon (ENSMUSG00000074783.10, exon 4 of 4) -13005 ENSMUSG00000081445.1 ENSMUSG00000081445 ENSMUST00000121008 Rpl23a-ps4 processed_pseudogene Interval_3695 chr1 61054800 61055043 + 0 NA Intergenic Intergenic -20753 ENSMUSG00000082804.3 ENSMUSG00000082804 ENSMUST00000119156 Rpl17-ps1 processed_pseudogene Interval_35601 chr12 25208524 25210183 + 0 NA TTS (ENSMUSG00000113587.1) lincRNA-TTS (ENSMUSG00000113587.1) 27585 ENSMUSG00000114033.1 ENSMUSG00000114033 ENSMUST00000222804 Gm47705 lincRNA Interval_1639 chr1 30696510 30697028 + 0 NA Intergenic Intergenic 23193 ENSMUSG00000053185.2 ENSMUSG00000053185 ENSMUST00000065469 Gm9898 lincRNA Interval_157040 chr8 64717825 64718318 + 0 NA TTS (ENSMUSG00000031604.10) protein_coding-TTS (ENSMUSG00000031604.10) -6995 ENSMUSG00000110368.1 ENSMUSG00000110368 ENSMUST00000210776 Gm45518 lincRNA Interval_168297 chr9 78503021 78506793 + 0 NA Intergenic Intergenic -15639 ENSMUSG00000111417.1 ENSMUSG00000111417 ENSMUST00000214586 Gm47430 lincRNA Interval_30567 chr11 95152811 95153488 + 0 NA intron (ENSMUSG00000086552.3, intron 1 of 2) antisense-intron (ENSMUSG00000086552.3, intron 1 of 2) -7348 ENSMUSG00000020871.8 ENSMUSG00000020871 ENSMUST00000146838 Dlx4 protein_coding Interval_7840 chr1 134070062 134071207 + 0 NA Intergenic Intergenic 8486 ENSMUSG00000020423.6 ENSMUSG00000020423 ENSMUST00000020692 Btg2 protein_coding Interval_33053 chr11 113902796 113903901 + 0 NA intron (ENSMUSG00000041592.16, intron 2 of 11) protein_coding-intron (ENSMUSG00000041592.16, intron 2 of 44) -92925 ENSMUSG00000041592.16 ENSMUSG00000041592 ENSMUST00000144301 Sdk2 protein_coding Interval_139736 chr6 108252353 108252785 + 0 NA promoter-TSS (ENSMUSG00000030102.11) protein_coding-promoter-TSS (ENSMUSG00000030102.11) -67013 ENSMUSG00000030101.15 ENSMUSG00000030101 ENSMUST00000171697 Sumf1 protein_coding Interval_92863 chr2 67089460 67090023 + 0 NA Intergenic Intergenic 104994 ENSMUSG00000086908.1 ENSMUSG00000086908 ENSMUST00000147939 Gm13598 lincRNA Interval_89620 chr2 23453248 23453647 + 0 NA Intergenic Intergenic -39484 ENSMUSG00000102704.1 ENSMUSG00000102704 ENSMUST00000192063 Gm38309 TEC Interval_147049 chr7 60006210 60006595 + 0 NA intron (ENSMUSG00000102252.5, intron 2 of 10) protein_coding-intron (ENSMUSG00000102252.5, intron 2 of 10) -1353 ENSMUSG00000102627.1 ENSMUSG00000102627 ENSMUST00000194059 Snurf protein_coding Interval_121430 chr4 155746830 155747482 + 0 NA promoter-TSS (ENSMUSG00000029036.18) protein_coding-promoter-TSS (ENSMUSG00000029036.18) 12352 ENSMUSG00000084845.9 ENSMUSG00000084845 ENSMUST00000127188 Tmem240 protein_coding Interval_129706 chr5 121881991 121882277 + 0 NA intron (ENSMUSG00000042589.18, intron 8 of 20) protein_coding-intron (ENSMUSG00000042589.18, intron 10 of 22) -16071 ENSMUSG00000042589.18 ENSMUSG00000042589 ENSMUST00000125267 Cux2 protein_coding Interval_46248 chr13 62944605 62945127 + 0 NA exon (ENSMUSG00000113057.1, exon 2 of 2) lincRNA-exon (ENSMUSG00000113057.1, exon 2 of 2) 4576 ENSMUSG00000113057.1 ENSMUSG00000113057 ENSMUST00000221723 Gm48812 lincRNA Interval_124165 chr5 38781617 38782264 + 0 NA intron (ENSMUSG00000039315.15, intron 4 of 18) protein_coding-intron (ENSMUSG00000039315.15, intron 4 of 18) 45956 ENSMUSG00000079528.9 ENSMUSG00000079528 ENSMUST00000177682 Clnkos antisense Interval_67057 chr16 42291805 42292128 + 0 NA exon (ENSMUSG00000047261.9, exon 2 of 3) protein_coding-exon (ENSMUSG00000047261.9, exon 2 of 3) 11503 ENSMUSG00000098300.1 ENSMUSG00000098300 ENSMUST00000184886 Mir6540 miRNA Interval_90917 chr2 33465443 33466348 + 0 NA promoter-TSS (ENSMUSG00000026788.13) protein_coding-promoter-TSS (ENSMUSG00000026788.13) -813 ENSMUSG00000026788.13 ENSMUSG00000026788 ENSMUST00000126442 Zbtb43 protein_coding Interval_143561 chr7 12824168 12824410 + 0 NA Intergenic Intergenic -1629 ENSMUSG00000110119.1 ENSMUSG00000110119 ENSMUST00000211415 Gm45593 lincRNA Interval_5438 chr1 88773988 88774960 + 0 NA Intergenic Intergenic 19584 ENSMUSG00000097398.2 ENSMUSG00000097398 ENSMUST00000180596 Platr5 lincRNA Interval_109349 chr3 139484453 139484818 + 0 NA intron (ENSMUSG00000047940.13, intron 11 of 13) protein_coding-intron (ENSMUSG00000047940.13, intron 11 of 13) -66772 ENSMUSG00000065675.1 ENSMUSG00000065675 ENSMUST00000083741 Gm24260 snRNA Interval_70940 chr17 16394334 16395541 + 0 NA Intergenic Intergenic -73837 ENSMUSG00000116614.1 ENSMUSG00000116614 ENSMUST00000231650 Gm46610 processed_pseudogene Interval_79165 chr18 25213247 25213473 + 0 NA intron (ENSMUSG00000033632.16, intron 5 of 5) protein_coding-intron (ENSMUSG00000033632.16, intron 5 of 9) 44340 ENSMUSG00000033632.16 ENSMUSG00000033632 ENSMUST00000100131 AW554918 protein_coding Interval_122202 chr5 19432670 19432844 + 0 NA intron (ENSMUSG00000040003.18, intron 1 of 2) protein_coding-intron (ENSMUSG00000040003.18, intron 1 of 22) 73366 ENSMUSG00000106204.1 ENSMUSG00000106204 ENSMUST00000197169 Gm21009 processed_pseudogene Interval_52793 chr14 50352354 50352986 + 0 NA Intergenic Intergenic -3798 ENSMUSG00000046210.7 ENSMUSG00000046210 ENSMUST00000049729 Olfr735 protein_coding Interval_91256 chr2 36722422 36722669 + 0 NA Intergenic Intergenic -9357 ENSMUSG00000111863.2 ENSMUSG00000111863 ENSMUST00000078761 Olfr347 protein_coding Interval_32737 chr11 110224299 110224600 + 0 NA intron (ENSMUSG00000044749.13, intron 11 of 38) protein_coding-intron (ENSMUSG00000044749.13, intron 11 of 38) 27327 ENSMUSG00000044749.13 ENSMUSG00000044749 ENSMUST00000150988 Abca6 protein_coding Interval_125770 chr5 74028393 74030120 + 0 NA TTS (ENSMUSG00000054814.14) protein_coding-TTS (ENSMUSG00000054814.14) 112 ENSMUSG00000054814.14 ENSMUSG00000054814 ENSMUST00000145016 Usp46 protein_coding Interval_53166 chr14 54854170 54854385 + 0 NA TTS (ENSMUSG00000112858.2) protein_coding-TTS (ENSMUSG00000112858.2) 2919 ENSMUSG00000057156.10 ENSMUSG00000057156 ENSMUST00000146642 Homez protein_coding Interval_48778 chr13 103120363 103121231 + 0 NA intron (ENSMUSG00000034751.17, intron 3 of 3) protein_coding-intron (ENSMUSG00000034751.17, intron 3 of 4) -23952 ENSMUSG00000034751.17 ENSMUSG00000034751 ENSMUST00000187024 Mast4 protein_coding Interval_98315 chr2 150963330 150963972 + 0 NA intron (ENSMUSG00000068115.13, intron 3 of 6) protein_coding-intron (ENSMUSG00000068115.13, intron 9 of 23) 7429 ENSMUSG00000068115.13 ENSMUSG00000068115 ENSMUST00000128627 Ninl protein_coding Interval_66702 chr16 36473355 36474207 + 0 NA promoter-TSS (ENSMUSG00000116917.1) TEC-promoter-TSS (ENSMUSG00000116917.1) 60 ENSMUSG00000116917.1 ENSMUSG00000116917 ENSMUST00000231458 Gm49653 TEC Interval_122111 chr5 17148345 17149179 + 0 NA Intergenic Intergenic 79172 ENSMUSG00000091273.1 ENSMUSG00000091273 ENSMUST00000166114 Gm6673 unprocessed_pseudogene Interval_9874 chr1 163646446 163646671 + 0 NA Intergenic Intergenic 22765 ENSMUSG00000102117.1 ENSMUSG00000102117 ENSMUST00000191040 Rpsa-ps1 processed_pseudogene Interval_40035 chr12 100681763 100682099 + 0 NA intron (ENSMUSG00000021180.9, intron 1 of 7) protein_coding-intron (ENSMUSG00000021180.9, intron 1 of 17) 43189 ENSMUSG00000021180.9 ENSMUSG00000021180 ENSMUST00000222347 Rps6ka5 protein_coding Interval_91553 chr2 43128739 43128950 + 0 NA Intergenic Intergenic 319809 ENSMUSG00000105844.1 ENSMUSG00000105844 ENSMUST00000198309 Gm24350 snoRNA Interval_100180 chr2 167502778 167504373 + 0 NA exon (ENSMUSG00000006418.17, exon 1 of 6) protein_coding-exon (ENSMUSG00000006418.17, exon 1 of 6) 129 ENSMUSG00000006418.17 ENSMUSG00000006418 ENSMUST00000127939 Rnf114 protein_coding Interval_145003 chr7 29367392 29368089 + 0 NA promoter-TSS (ENSMUSG00000030583.16) protein_coding-promoter-TSS (ENSMUSG00000030583.16) 9865 ENSMUSG00000030583.16 ENSMUSG00000030583 ENSMUST00000183085 Sipa1l3 protein_coding Interval_119455 chr4 137722838 137723098 + 0 NA intron (ENSMUSG00000041351.16, intron 18 of 24) protein_coding-intron (ENSMUSG00000041351.16, intron 18 of 24) -16362 ENSMUSG00000087476.1 ENSMUSG00000087476 ENSMUST00000135358 Rap1gapos antisense Interval_122297 chr5 21013855 21014402 + 0 NA intron (ENSMUSG00000028771.13, intron 4 of 9) protein_coding-intron (ENSMUSG00000028771.13, intron 6 of 17) -17624 ENSMUSG00000106158.1 ENSMUSG00000106158 ENSMUST00000196295 Gm43216 TEC Interval_73550 chr17 40285135 40286784 + 0 NA Intergenic Intergenic 33248 ENSMUSG00000025431.4 ENSMUSG00000025431 ENSMUST00000026498 Crisp1 protein_coding Interval_48010 chr13 95078166 95078641 + 0 NA intron (ENSMUSG00000021684.17, intron 7 of 18) protein_coding-intron (ENSMUSG00000021684.17, intron 9 of 20) 54102 ENSMUSG00000113070.1 ENSMUSG00000113070 ENSMUST00000220923 Gm48420 antisense Interval_153646 chr8 4252790 4253832 + 0 NA promoter-TSS (ENSMUSG00000011837.4) protein_coding-promoter-TSS (ENSMUSG00000011837.4) -108 ENSMUSG00000011837.4 ENSMUSG00000011837 ENSMUST00000208110 Snapc2 protein_coding Interval_36042 chr12 33612146 33612313 + 0 NA Intergenic Intergenic -115332 ENSMUSG00000112076.1 ENSMUSG00000112076 ENSMUST00000219348 Gm9368 processed_pseudogene Interval_18825 chr10 91137061 91138839 + 0 NA Intergenic Intergenic -13928 ENSMUSG00000061904.12 ENSMUSG00000061904 ENSMUST00000172442 Slc25a3 protein_coding Interval_29108 chr11 80382734 80383851 + 0 NA promoter-TSS (ENSMUSG00000017421.18) protein_coding-promoter-TSS (ENSMUSG00000017421.18) 13 ENSMUSG00000017421.18 ENSMUSG00000017421 ENSMUST00000123726 Zfp207 protein_coding Interval_122697 chr5 24719761 24719970 + 0 NA intron (ENSMUSG00000055235.11, intron 2 of 4) protein_coding-intron (ENSMUSG00000055235.11, intron 2 of 5) -6488 ENSMUSG00000055235.11 ENSMUSG00000055235 ENSMUST00000127320 Wdr86 protein_coding Interval_145054 chr7 29768053 29769205 + 0 NA promoter-TSS (ENSMUSG00000046185.10) protein_coding-promoter-TSS (ENSMUSG00000046185.10) 77 ENSMUSG00000046185.10 ENSMUSG00000046185 ENSMUST00000032802 Zfp84 protein_coding Interval_169786 chr9 101356590 101357587 + 0 NA Intergenic Intergenic 14894 ENSMUSG00000101941.1 ENSMUSG00000101941 ENSMUST00000190949 Gm28979 lincRNA Interval_27519 chr11 68371873 68372515 + 0 NA intron (ENSMUSG00000020902.12, intron 3 of 7) protein_coding-intron (ENSMUSG00000020902.12, intron 2 of 6) 14818 ENSMUSG00000020902.12 ENSMUSG00000020902 ENSMUST00000135141 Ntn1 protein_coding Interval_56577 chr14 120440035 120440325 + 0 NA Intergenic Intergenic -38264 ENSMUSG00000051615.14 ENSMUSG00000051615 ENSMUST00000062117 Rap2a protein_coding Interval_140264 chr6 115888417 115888623 + 0 NA intron (ENSMUSG00000030323.13, intron 1 of 1) protein_coding-intron (ENSMUSG00000030323.13, intron 10 of 28) 34932 ENSMUSG00000030323.13 ENSMUSG00000030323 ENSMUST00000155565 Ift122 protein_coding Interval_60584 chr15 75443831 75444320 + 0 NA Intergenic Intergenic -5382 ENSMUSG00000093626.1 ENSMUSG00000093626 ENSMUST00000177479 Ly6l protein_coding Interval_24884 chr11 40737304 40738078 + 0 NA intron (ENSMUSG00000020328.10, intron 1 of 1) protein_coding-intron (ENSMUSG00000020328.10, intron 3 of 3) 1385 ENSMUSG00000020328.10 ENSMUSG00000020328 ENSMUST00000144601 Nudcd2 protein_coding Interval_92059 chr2 52927846 52928644 + 0 NA intron (ENSMUSG00000036053.17, intron 1 of 26) protein_coding-intron (ENSMUSG00000036053.17, intron 1 of 26) 70385 ENSMUSG00000036053.17 ENSMUSG00000036053 ENSMUST00000050719 Fmnl2 protein_coding Interval_53310 chr14 55941987 55942407 + 0 NA exon (ENSMUSG00000022225.7, exon 4 of 5) protein_coding-exon (ENSMUSG00000022225.7, exon 4 of 5) 2478 ENSMUSG00000022225.7 ENSMUSG00000022225 ENSMUST00000022834 Cma1 protein_coding Interval_85949 chr19 34025161 34025898 + 0 NA intron (ENSMUSG00000024771.7, intron 5 of 9) protein_coding-intron (ENSMUSG00000024771.7, intron 5 of 9) 17239 ENSMUSG00000024771.7 ENSMUSG00000024771 ENSMUST00000224738 Lipk protein_coding Interval_50265 chr14 11537945 11538172 + 0 NA Intergenic Intergenic -17288 ENSMUSG00000114849.1 ENSMUSG00000114849 ENSMUST00000224543 Gm48595 lincRNA Interval_120657 chr4 149943320 149943570 + 0 NA promoter-TSS (ENSMUSG00000039911.13) protein_coding-promoter-TSS (ENSMUSG00000039911.13) -20974 ENSMUSG00000039911.13 ENSMUSG00000039911 ENSMUST00000135896 Spsb1 protein_coding Interval_31113 chr11 98220381 98220776 + 0 NA exon (ENSMUSG00000003119.14, exon 1 of 2) protein_coding-exon (ENSMUSG00000003119.14, exon 1 of 2) -18040 ENSMUSG00000098827.1 ENSMUSG00000098827 ENSMUST00000184250 Gm27399 miRNA Interval_44037 chr13 40263116 40263383 + 0 NA intron (ENSMUSG00000047094.9, intron 4 of 17) protein_coding-intron (ENSMUSG00000047094.9, intron 4 of 18) 24762 ENSMUSG00000047094.9 ENSMUSG00000047094 ENSMUST00000224813 Ofcc1 protein_coding Interval_82469 chr18 74267614 74268690 + 0 NA promoter-TSS (ENSMUSG00000024561.11) protein_coding-promoter-TSS (ENSMUSG00000024561.11) -23 ENSMUSG00000024561.11 ENSMUSG00000024561 ENSMUST00000237568 Mbd1 protein_coding Interval_4606 chr1 75421833 75423477 + 0 NA promoter-TSS (ENSMUSG00000026207.16) protein_coding-promoter-TSS (ENSMUSG00000026207.16) -14287 ENSMUSG00000033021.16 ENSMUSG00000033021 ENSMUST00000124539 Gmppa protein_coding Interval_49810 chr13 116293683 116294273 + 0 NA Intergenic Intergenic 15707 ENSMUSG00000042258.13 ENSMUSG00000042258 ENSMUST00000177469 Isl1 protein_coding Interval_150051 chr7 105419385 105419584 + 0 NA Intergenic Intergenic -5511 ENSMUSG00000109609.1 ENSMUSG00000109609 ENSMUST00000211108 Gm4972 processed_pseudogene Interval_71421 chr17 23657935 23658293 + 0 NA Intergenic Intergenic -8012 ENSMUSG00000043782.9 ENSMUSG00000043782 ENSMUST00000233930 Bicdl2 protein_coding Interval_71250 chr17 21589562 21589807 + 0 NA TTS (ENSMUSG00000067931.6) protein_coding-TTS (ENSMUSG00000067931.6) 22676 ENSMUSG00000067931.6 ENSMUSG00000067931 ENSMUST00000088787 Zfp948 protein_coding Interval_110310 chr3 156560586 156562658 + 0 NA promoter-TSS (ENSMUSG00000040037.13) protein_coding-promoter-TSS (ENSMUSG00000040037.13) 65 ENSMUSG00000085084.7 ENSMUSG00000085084 ENSMUST00000140941 4930570G19Rik lincRNA Interval_124325 chr5 43968503 43969107 + 0 NA Intergenic Intergenic 12974 ENSMUSG00000048373.8 ENSMUSG00000048373 ENSMUST00000199481 Fgfbp1 protein_coding Interval_50591 chr14 16242859 16243845 + 0 NA promoter-TSS (ENSMUSG00000021786.13) protein_coding-promoter-TSS (ENSMUSG00000021786.13) 1 ENSMUSG00000114907.1 ENSMUSG00000114907 ENSMUST00000225889 Gm47794 antisense Interval_98903 chr2 155914457 155914657 + 0 NA intron (ENSMUSG00000005882.18, intron 2 of 6) protein_coding-intron (ENSMUSG00000005882.18, intron 2 of 6) 15719 ENSMUSG00000005882.18 ENSMUSG00000005882 ENSMUST00000142655 Uqcc1 protein_coding Interval_168170 chr9 77742311 77742624 + 0 NA Intergenic Intergenic -9199 ENSMUSG00000111014.1 ENSMUSG00000111014 ENSMUST00000215539 Gm47795 lincRNA Interval_7756 chr1 133465295 133466139 + 0 NA Intergenic Intergenic -41340 ENSMUSG00000070643.11 ENSMUSG00000070643 ENSMUST00000126530 Sox13 protein_coding Interval_39672 chr12 91994496 91995784 + 0 NA Intergenic Intergenic 14035 ENSMUSG00000112953.1 ENSMUSG00000112953 ENSMUST00000223280 Gm47984 processed_pseudogene Interval_69899 chr17 3053486 3055985 + 0 NA TTS (ENSMUSG00000089690.1) unprocessed_pseudogene-TTS (ENSMUSG00000089690.1) 1576 ENSMUSG00000089690.1 ENSMUSG00000089690 ENSMUST00000160526 Gm16569 unprocessed_pseudogene Interval_127408 chr5 103770466 103771516 + 0 NA intron (ENSMUSG00000029313.18, intron 1 of 12) protein_coding-intron (ENSMUSG00000029313.18, intron 1 of 19) 16427 ENSMUSG00000029313.18 ENSMUSG00000029313 ENSMUST00000152145 Aff1 protein_coding Interval_68052 chr16 64761261 64762028 + 0 NA TTS (ENSMUSG00000059920.9) protein_coding-TTS (ENSMUSG00000059920.9) 5012 ENSMUSG00000059920.9 ENSMUSG00000059920 ENSMUST00000076991 4930453N24Rik protein_coding Interval_26251 chr11 55430640 55431062 + 0 NA Intergenic Intergenic -10526 ENSMUSG00000018593.13 ENSMUSG00000018593 ENSMUST00000125787 Sparc protein_coding Interval_84813 chr19 17005930 17007676 + 0 NA intron (ENSMUSG00000039126.10, intron 4 of 6) protein_coding-intron (ENSMUSG00000039126.10, intron 4 of 19) 50384 ENSMUSG00000098298.1 ENSMUSG00000098298 ENSMUST00000184854 Gm27970 misc_RNA Interval_109926 chr3 151817630 151818878 + 0 NA intron (ENSMUSG00000028036.6, intron 1 of 1) protein_coding-intron (ENSMUSG00000028036.6, intron 2 of 2) 15901 ENSMUSG00000028036.6 ENSMUSG00000028036 ENSMUST00000128349 Ptgfr protein_coding Interval_7064 chr1 125134607 125135192 + 0 NA Intergenic Intergenic 62556 ENSMUSG00000099574.1 ENSMUSG00000099574 ENSMUST00000187796 1700121L03Rik lincRNA Interval_158857 chr8 87386097 87386319 + 0 NA TTS (ENSMUSG00000098391.2) processed_transcript-TTS (ENSMUSG00000098391.2) 1343 ENSMUSG00000098391.2 ENSMUSG00000098391 ENSMUST00000195652 Gm27208 processed_transcript Interval_55720 chr14 99298244 99299419 + 0 NA promoter-TSS (ENSMUSG00000005148.8) protein_coding-promoter-TSS (ENSMUSG00000005148.8) -323 ENSMUSG00000005148.8 ENSMUSG00000005148 ENSMUST00000226784 Klf5 protein_coding Interval_60274 chr15 72006701 72007231 + 0 NA exon (ENSMUSG00000079022.10, exon 3 of 64) protein_coding-exon (ENSMUSG00000079022.10, exon 3 of 64) -52567 ENSMUSG00000079022.10 ENSMUSG00000079022 ENSMUST00000162081 Col22a1 protein_coding Interval_102427 chr3 25450380 25451065 + 0 NA intron (ENSMUSG00000063887.13, intron 5 of 7) protein_coding-intron (ENSMUSG00000063887.13, intron 3 of 5) -95298 ENSMUSG00000087945.1 ENSMUSG00000087945 ENSMUST00000157320 Gm24250 rRNA Interval_24357 chr11 32647854 32648469 + 0 NA intron (ENSMUSG00000020271.17, intron 1 of 12) protein_coding-intron (ENSMUSG00000020271.17, intron 1 of 13) 5257 ENSMUSG00000020271.17 ENSMUSG00000020271 ENSMUST00000143290 Fbxw11 protein_coding Interval_165444 chr9 48109247 48109877 + 0 NA Intergenic Intergenic 49403 ENSMUSG00000110924.1 ENSMUSG00000110924 ENSMUST00000214538 Gm40518 lincRNA Interval_76242 chr17 78379491 78379829 + 0 NA intron (ENSMUSG00000056121.16, intron 4 of 4) protein_coding-intron (ENSMUSG00000056121.16, intron 7 of 7) 22875 ENSMUSG00000056121.16 ENSMUSG00000056121 ENSMUST00000234900 Fez2 protein_coding Interval_126793 chr5 92967380 92967703 + 0 NA Intergenic Intergenic -36290 ENSMUSG00000106930.1 ENSMUSG00000106930 ENSMUST00000200896 Gm6450 processed_pseudogene Interval_68638 chr16 82558162 82558418 + 0 NA Intergenic Intergenic -6918 ENSMUSG00000116923.1 ENSMUSG00000116923 ENSMUST00000231395 Gm7559 processed_pseudogene Interval_132842 chr5 148267646 148268565 + 0 NA intron (ENSMUSG00000029651.16, intron 1 of 7) protein_coding-intron (ENSMUSG00000029651.16, intron 1 of 6) 32113 ENSMUSG00000029651.16 ENSMUSG00000029651 ENSMUST00000085554 Mtus2 protein_coding Interval_169267 chr9 95992255 95992714 + 0 NA intron (ENSMUSG00000032410.13, intron 18 of 20) protein_coding-intron (ENSMUSG00000032410.13, intron 18 of 41) 26921 ENSMUSG00000101867.1 ENSMUSG00000101867 ENSMUST00000186632 C78334 antisense Interval_129643 chr5 121503375 121503705 + 0 NA promoter-TSS (ENSMUSG00000062438.4) protein_coding-promoter-TSS (ENSMUSG00000062438.4) 27 ENSMUSG00000104999.1 ENSMUSG00000104999 ENSMUST00000196484 4930477O15Rik TEC Interval_70698 chr17 13657922 13659855 + 0 NA intron (ENSMUSG00000117042.1, intron 1 of 5) lincRNA-intron (ENSMUSG00000117063.1, intron 1 of 4) 10003 ENSMUSG00000117042.1 ENSMUSG00000117042 ENSMUST00000185626 2700054A10Rik lincRNA Interval_104636 chr3 69004120 69006472 + 0 NA promoter-TSS (ENSMUSG00000027778.15) protein_coding-promoter-TSS (ENSMUSG00000027778.15) 281 ENSMUSG00000034349.14 ENSMUSG00000034349 ENSMUST00000128118 Smc4 protein_coding Interval_97382 chr2 135650338 135652124 + 0 NA intron (ENSMUSG00000084762.1, intron 2 of 3) lincRNA-intron (ENSMUSG00000084762.1, intron 2 of 3) 2324 ENSMUSG00000084762.1 ENSMUSG00000084762 ENSMUST00000146980 Platr3 lincRNA Interval_60960 chr15 78239410 78239919 + 0 NA Intergenic Intergenic -21214 ENSMUSG00000071715.12 ENSMUSG00000071715 ENSMUST00000148646 Ncf4 protein_coding Interval_163418 chr9 21366718 21368721 + 0 NA promoter-TSS (ENSMUSG00000032178.14) protein_coding-promoter-TSS (ENSMUSG00000032178.14) 1465 ENSMUSG00000110915.1 ENSMUSG00000110915 ENSMUST00000217490 Gm36198 antisense Interval_128117 chr5 111096211 111096981 + 0 NA intron (ENSMUSG00000033209.17, intron 3 of 22) protein_coding-intron (ENSMUSG00000033209.17, intron 3 of 23) -61715 ENSMUSG00000106153.1 ENSMUSG00000106153 ENSMUST00000198098 Gm43677 TEC Interval_159160 chr8 91246074 91246495 + 0 NA intron (ENSMUSG00000033282.14, intron 22 of 25) protein_coding-intron (ENSMUSG00000033282.14, intron 22 of 25) 14251 ENSMUSG00000109828.1 ENSMUSG00000109828 ENSMUST00000210054 Gm45662 TEC Interval_27597 chr11 68956766 68957701 + 0 NA intron (ENSMUSG00000052921.13, intron 1 of 16) protein_coding-intron (ENSMUSG00000052921.13, intron 1 of 16) -9408 ENSMUSG00000052921.13 ENSMUSG00000052921 ENSMUST00000108670 Arhgef15 protein_coding Interval_166199 chr9 57453204 57454773 + 0 NA intron (ENSMUSG00000040722.7, intron 1 of 5) protein_coding-intron (ENSMUSG00000040722.7, intron 1 of 6) 14049 ENSMUSG00000040722.7 ENSMUSG00000040722 ENSMUST00000215059 Scamp5 protein_coding Interval_173807 chrX 104619387 104619779 + 0 NA intron (ENSMUSG00000033906.5, intron 2 of 11) protein_coding-intron (ENSMUSG00000033906.5, intron 2 of 11) 2718 ENSMUSG00000089171.1 ENSMUSG00000089171 ENSMUST00000158546 Gm22430 snoRNA Interval_19466 chr10 99641472 99642290 + 0 NA promoter-TSS (ENSMUSG00000112503.1) transcribed_processed_pseudogene-promoter-TSS (ENSMUSG00000112503.1) -2631 ENSMUSG00000112503.1 ENSMUSG00000112503 ENSMUST00000218988 Gm18409 transcribed_processed_pseudogene Interval_119237 chr4 136379034 136379763 + 0 NA Intergenic Intergenic -29957 ENSMUSG00000098155.1 ENSMUSG00000098155 ENSMUST00000183225 Gm27022 lincRNA Interval_107454 chr3 107822859 107824140 + 0 NA intron (ENSMUSG00000106426.1, intron 2 of 3) lincRNA-intron (ENSMUSG00000106426.1, intron 2 of 3) 10040 ENSMUSG00000106426.1 ENSMUSG00000106426 ENSMUST00000198171 Gm36211 lincRNA Interval_133783 chr6 12116914 12117157 + 0 NA Intergenic Intergenic -11591 ENSMUSG00000108209.1 ENSMUSG00000108209 ENSMUST00000203296 Gm32222 processed_pseudogene Interval_133455 chr6 5216652 5217313 + 0 NA exon (ENSMUSG00000107881.1, exon 1 of 1) TEC-exon (ENSMUSG00000107881.1, exon 1 of 1) 3504 ENSMUSG00000107881.1 ENSMUSG00000107881 ENSMUST00000203092 Gm44250 TEC Interval_40838 chr12 108772082 108772698 + 0 NA Intergenic Intergenic -9420 ENSMUSG00000112971.1 ENSMUSG00000112971 ENSMUST00000222233 Gm33682 lincRNA Interval_125407 chr5 66730703 66731540 + 0 NA Intergenic Intergenic 12751 ENSMUSG00000107284.1 ENSMUSG00000107284 ENSMUST00000202958 Gm43280 TEC Interval_118139 chr4 129178875 129179381 + 0 NA promoter-TSS (ENSMUSG00000040928.15) protein_coding-promoter-TSS (ENSMUSG00000040928.15) 10449 ENSMUSG00000040928.15 ENSMUSG00000040928 ENSMUST00000142490 S100pbp protein_coding Interval_23712 chr11 25063365 25064049 + 0 NA Intergenic Intergenic -137657 ENSMUSG00000087145.7 ENSMUSG00000087145 ENSMUST00000126063 Gm12665 lincRNA Interval_146240 chr7 44908935 44909173 + 0 NA intron (ENSMUSG00000060279.14, intron 2 of 5) protein_coding-intron (ENSMUSG00000060279.14, intron 6 of 23) -7360 ENSMUSG00000060279.14 ENSMUSG00000060279 ENSMUST00000208285 Ap2a1 protein_coding Interval_65895 chr16 30104123 30104743 + 0 NA Intergenic Intergenic -11551 ENSMUSG00000116997.1 ENSMUSG00000116997 ENSMUST00000232024 Gm20040 processed_pseudogene Interval_33003 chr11 113611873 113612640 + 0 NA intron (ENSMUSG00000041654.15, intron 1 of 4) protein_coding-intron (ENSMUSG00000041654.15, intron 1 of 2) -7086 ENSMUSG00000047904.6 ENSMUSG00000047904 ENSMUST00000067591 Sstr2 protein_coding Interval_134697 chr6 30468665 30469794 + 0 NA Intergenic Intergenic 9101 ENSMUSG00000085470.1 ENSMUSG00000085470 ENSMUST00000132023 1700012C14Rik lincRNA Interval_88662 chr2 9212245 9212551 + 0 NA Intergenic Intergenic 22883 ENSMUSG00000085580.1 ENSMUSG00000085580 ENSMUST00000132414 1700061F12Rik lincRNA Interval_46686 chr13 69168171 69169142 + 0 NA Intergenic Intergenic 27427 ENSMUSG00000097522.1 ENSMUSG00000097522 ENSMUST00000181690 Gm26844 lincRNA Interval_146057 chr7 43579380 43580698 + 0 NA intron (ENSMUSG00000030469.10, intron 1 of 2) protein_coding-intron (ENSMUSG00000030469.10, intron 1 of 3) 420 ENSMUSG00000030469.10 ENSMUSG00000030469 ENSMUST00000147075 Zfp719 protein_coding Interval_111371 chr4 19922410 19922609 + 0 NA promoter-TSS (ENSMUSG00000028238.6) protein_coding-promoter-TSS (ENSMUSG00000028238.6) -5569 ENSMUSG00000028238.6 ENSMUSG00000028238 ENSMUST00000128605 Atp6v0d2 protein_coding Interval_11953 chr1 187603886 187605039 + 0 NA Intergenic Intergenic -5234 ENSMUSG00000026610.13 ENSMUSG00000026610 ENSMUST00000110938 Esrrg protein_coding Interval_120951 chr4 151896907 151897487 + 0 NA Intergenic Intergenic 19217 ENSMUSG00000104142.1 ENSMUSG00000104142 ENSMUST00000191938 Gm37141 TEC Interval_82263 chr18 69750369 69751477 + 0 NA Intergenic Intergenic 27122 ENSMUSG00000064706.1 ENSMUSG00000064706 ENSMUST00000082772 Gm22508 misc_RNA Interval_163466 chr9 21574586 21574820 + 0 NA promoter-TSS (ENSMUSG00000032185.15) protein_coding-promoter-TSS (ENSMUSG00000032185.15) -12642 ENSMUSG00000032185.15 ENSMUSG00000032185 ENSMUST00000130100 Carm1 protein_coding Interval_127635 chr5 105986226 105986969 + 0 NA Intergenic Intergenic -5415 ENSMUSG00000105129.1 ENSMUSG00000105129 ENSMUST00000199576 Gm19566 processed_pseudogene Interval_58383 chr15 34042918 34043574 + 0 NA Intergenic Intergenic -5466 ENSMUSG00000115428.1 ENSMUSG00000115428 ENSMUST00000228182 Gm41290 lincRNA Interval_85968 chr19 34309769 34310327 + 0 NA TTS (ENSMUSG00000024778.13) protein_coding-TTS (ENSMUSG00000024778.13) 9973 ENSMUSG00000024778.13 ENSMUSG00000024778 ENSMUST00000236731 Fas protein_coding Interval_153233 chr7 142667988 142668318 + 0 NA exon (ENSMUSG00000086266.1, exon 4 of 4) antisense-exon (ENSMUSG00000086266.1, exon 4 of 4) 1789 ENSMUSG00000115302.1 ENSMUSG00000115302 ENSMUST00000228850 Gm49394 protein_coding Interval_142915 chr6 146924851 146925899 + 0 NA intron (ENSMUSG00000016487.15, intron 2 of 4) protein_coding-intron (ENSMUSG00000016487.15, intron 1 of 26) 29039 ENSMUSG00000040163.14 ENSMUSG00000040163 ENSMUST00000111622 1700034J05Rik protein_coding Interval_112502 chr4 41653317 41654693 + 0 NA Intergenic Intergenic 10029 ENSMUSG00000028444.17 ENSMUSG00000028444 ENSMUST00000145379 Cntfr protein_coding Interval_7675 chr1 132972199 132972835 + 0 NA exon (ENSMUSG00000054387.13, exon 1 of 3) protein_coding-exon (ENSMUSG00000054387.13, exon 1 of 3) -27197 ENSMUSG00000102709.1 ENSMUSG00000102709 ENSMUST00000194934 Gm38308 TEC Interval_76788 chr17 84067149 84068104 + 0 NA Intergenic Intergenic -11034 ENSMUSG00000117571.1 ENSMUSG00000117571 ENSMUST00000234076 4933433H22Rik lincRNA Interval_54803 chr14 75235657 75236078 + 0 NA Intergenic Intergenic -26146 ENSMUSG00000104689.1 ENSMUSG00000104689 ENSMUST00000199232 Gm44482 miRNA Interval_49332 chr13 111172082 111172306 + 0 NA Intergenic Intergenic 57237 ENSMUSG00000114824.1 ENSMUSG00000114824 ENSMUST00000225326 3110015C05Rik lincRNA Interval_171294 chr9 116139042 116139293 + 0 NA intron (ENSMUSG00000032440.13, intron 1 of 6) protein_coding-intron (ENSMUSG00000032440.13, intron 1 of 6) 36098 ENSMUSG00000032440.13 ENSMUSG00000032440 ENSMUST00000035014 Tgfbr2 protein_coding Interval_150956 chr7 116721277 116721621 + 0 NA Intergenic Intergenic -29964 ENSMUSG00000088234.1 ENSMUSG00000088234 ENSMUST00000157609 Gm25423 snRNA Interval_167663 chr9 71682463 71682709 + 0 NA intron (ENSMUSG00000032232.14, intron 7 of 17) protein_coding-intron (ENSMUSG00000032232.14, intron 8 of 18) -51477 ENSMUSG00000032232.14 ENSMUSG00000032232 ENSMUST00000146567 Cgnl1 protein_coding Interval_119576 chr4 138463049 138465304 + 0 NA Intergenic Intergenic 9862 ENSMUSG00000046447.3 ENSMUSG00000046447 ENSMUST00000050918 Camk2n1 protein_coding Interval_128212 chr5 111770237 111771290 + 0 NA Intergenic Intergenic -9060 ENSMUSG00000085271.7 ENSMUSG00000085271 ENSMUST00000129146 E130006D01Rik lincRNA Interval_19465 chr10 99625520 99625760 + 0 NA intron (ENSMUSG00000111962.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000111962.1, intron 1 of 2) 13610 ENSMUSG00000112503.1 ENSMUSG00000112503 ENSMUST00000218988 Gm18409 transcribed_processed_pseudogene Interval_83396 chr18 84862482 84862830 + 0 NA intron (ENSMUSG00000024646.14, intron 1 of 5) protein_coding-intron (ENSMUSG00000024646.14, intron 1 of 5) -3070 ENSMUSG00000089744.2 ENSMUSG00000089744 ENSMUST00000160306 Gm16146 antisense Interval_34736 chr12 9043066 9043704 + 0 NA Intergenic Intergenic 13358 ENSMUSG00000066637.2 ENSMUSG00000066637 ENSMUST00000219470 Ttc32 protein_coding Interval_6750 chr1 119183189 119183401 + 0 NA Intergenic Intergenic 25709 ENSMUSG00000096939.1 ENSMUSG00000096939 ENSMUST00000181691 Gm8321 processed_pseudogene Interval_146176 chr7 44527347 44528234 + 0 NA TTS (ENSMUSG00000008193.13) protein_coding-TTS (ENSMUSG00000008193.13) 3486 ENSMUSG00000008193.13 ENSMUSG00000008193 ENSMUST00000098483 Spib protein_coding Interval_121898 chr5 9281637 9281840 + 0 NA intron (ENSMUSG00000056004.16, intron 1 of 19) protein_coding-intron (ENSMUSG00000056004.16, intron 1 of 21) 15620 ENSMUSG00000056004.16 ENSMUSG00000056004 ENSMUST00000142202 9330182L06Rik protein_coding Interval_26296 chr11 55903764 55904633 + 0 NA intron (ENSMUSG00000086020.1, intron 1 of 4) antisense-intron (ENSMUSG00000086020.1, intron 1 of 4) 132110 ENSMUSG00000086020.1 ENSMUSG00000086020 ENSMUST00000134285 Gm12239 antisense Interval_3273 chr1 55383223 55383629 + 0 NA Intergenic Intergenic -1339 ENSMUSG00000101085.1 ENSMUSG00000101085 ENSMUST00000188319 Gm8531 processed_pseudogene Interval_59267 chr15 50397987 50398200 + 0 NA Intergenic Intergenic 111195 ENSMUSG00000115478.1 ENSMUSG00000115478 ENSMUST00000227182 Gm49198 lincRNA Interval_58642 chr15 36768941 36769950 + 0 NA Intergenic Intergenic 27484 ENSMUSG00000022285.17 ENSMUSG00000022285 ENSMUST00000227067 Ywhaz protein_coding Interval_96521 chr2 125259183 125259708 + 0 NA TTS (ENSMUSG00000027203.15) protein_coding-TTS (ENSMUSG00000027203.15) 11545 ENSMUSG00000027203.15 ENSMUSG00000027203 ENSMUST00000133211 Dut protein_coding Interval_45390 chr13 54824135 54825209 + 0 NA Intergenic Intergenic 16232 ENSMUSG00000086097.1 ENSMUSG00000086097 ENSMUST00000148974 Gm16250 processed_pseudogene Interval_63615 chr15 102358044 102358928 + 0 NA exon (ENSMUSG00000060284.7, exon 2 of 2) protein_coding-exon (ENSMUSG00000060284.7, exon 2 of 2) 7659 ENSMUSG00000116402.1 ENSMUSG00000116402 ENSMUST00000229977 Gm36246 bidirectional_promoter_lncRNA Interval_55484 chr14 88429300 88430400 + 0 NA Intergenic Intergenic -14270 ENSMUSG00000115114.1 ENSMUSG00000115114 ENSMUST00000227261 Gm48930 transcribed_processed_pseudogene Interval_3888 chr1 64445478 64446361 + 0 NA Intergenic Intergenic 8658 ENSMUSG00000099658.1 ENSMUSG00000099658 ENSMUST00000187877 Gm28980 processed_pseudogene Interval_130679 chr5 129684793 129685548 + 0 NA intron (ENSMUSG00000034219.15, intron 10 of 10) protein_coding-intron (ENSMUSG00000034219.15, intron 8 of 8) -15071 ENSMUSG00000051034.7 ENSMUSG00000051034 ENSMUST00000049778 Zfp11 protein_coding Interval_52069 chr14 35082900 35083117 + 0 NA intron (ENSMUSG00000041078.7, intron 4 of 15) protein_coding-intron (ENSMUSG00000041078.7, intron 4 of 15) 136430 ENSMUSG00000115826.1 ENSMUSG00000115826 ENSMUST00000227262 Gm49034 processed_pseudogene Interval_170468 chr9 108171726 108172921 + 0 NA intron (ENSMUSG00000032589.14, intron 1 of 11) protein_coding-intron (ENSMUSG00000032589.14, intron 1 of 11) 12044 ENSMUSG00000103658.1 ENSMUSG00000103658 ENSMUST00000191845 Gm37201 processed_pseudogene Interval_160488 chr8 109947504 109948588 + 0 NA exon (ENSMUSG00000001672.14, exon 3 of 3) protein_coding-exon (ENSMUSG00000001672.14, exon 3 of 3) 14007 ENSMUSG00000001672.14 ENSMUSG00000001672 ENSMUST00000155052 Marveld3 protein_coding Interval_138565 chr6 89356663 89357059 + 0 NA exon (ENSMUSG00000030084.11, exon 1 of 32) protein_coding-exon (ENSMUSG00000030084.11, exon 1 of 32) 11721 ENSMUSG00000107570.1 ENSMUSG00000107570 ENSMUST00000204568 Gm44207 TEC Interval_8887 chr1 151826603 151826798 + 0 NA Intergenic Intergenic 28255 ENSMUSG00000084557.1 ENSMUSG00000084557 ENSMUST00000122608 Gm25279 snRNA Interval_49905 chr13 118070880 118071060 + 0 NA Intergenic Intergenic 23650 ENSMUSG00000114713.1 ENSMUSG00000114713 ENSMUST00000225643 Gm9633 processed_pseudogene Interval_114341 chr4 73834538 73835381 + 0 NA Intergenic Intergenic -29438 ENSMUSG00000083530.1 ENSMUSG00000083530 ENSMUST00000120844 Gm13867 unprocessed_pseudogene Interval_46206 chr13 62499453 62501305 + 0 NA intron (ENSMUSG00000074865.11, intron 1 of 4) protein_coding-intron (ENSMUSG00000055228.8, intron 1 of 2) 28581 ENSMUSG00000113428.1 ENSMUSG00000113428 ENSMUST00000221988 Gm7664 processed_pseudogene Interval_62293 chr15 89488079 89489261 + 0 NA Intergenic Intergenic -9279 ENSMUSG00000118456.1 ENSMUSG00000118456 ENSMUST00000238218 Gm41381 lincRNA Interval_25412 chr11 47823635 47823931 + 0 NA intron (ENSMUSG00000020354.15, intron 1 of 2) protein_coding-intron (ENSMUSG00000020354.15, intron 1 of 2) 88762 ENSMUSG00000065804.1 ENSMUSG00000065804 ENSMUST00000083870 Gm23039 snRNA Interval_79420 chr18 31780643 31781608 + 0 NA TTS (ENSMUSG00000097748.1) antisense-TTS (ENSMUSG00000097748.1) 7920 ENSMUSG00000097748.1 ENSMUSG00000097748 ENSMUST00000180550 Gm26533 antisense Interval_48861 chr13 104121548 104122823 + 0 NA intron (ENSMUSG00000042743.13, intron 4 of 6) protein_coding-intron (ENSMUSG00000042743.13, intron 4 of 10) 12412 ENSMUSG00000042743.13 ENSMUSG00000042743 ENSMUST00000159574 Sgtb protein_coding Interval_33071 chr11 114175735 114176067 + 0 NA Intergenic Intergenic 10876 ENSMUSG00000086135.1 ENSMUSG00000086135 ENSMUST00000126577 1700001J04Rik antisense Interval_128761 chr5 115129516 115129737 + 0 NA TTS (ENSMUSG00000046562.5) protein_coding-TTS (ENSMUSG00000046562.5) 5299 ENSMUSG00000046562.5 ENSMUSG00000046562 ENSMUST00000153403 Unc119b protein_coding Interval_58701 chr15 37215257 37216501 + 0 NA Intergenic Intergenic 17280 ENSMUSG00000089804.2 ENSMUSG00000089804 ENSMUST00000159411 Gm16136 antisense Interval_163853 chr9 27148784 27149397 + 0 NA promoter-TSS (ENSMUSG00000031990.15) protein_coding-promoter-TSS (ENSMUSG00000031990.15) -22540 ENSMUSG00000031990.15 ENSMUSG00000031990 ENSMUST00000213682 Jam3 protein_coding Interval_166697 chr9 62031977 62032581 + 0 NA Intergenic Intergenic -5478 ENSMUSG00000032278.11 ENSMUSG00000032278 ENSMUST00000113990 Paqr5 protein_coding Interval_173953 chrX 115245036 115245635 + 0 NA Intergenic Intergenic 38108 ENSMUSG00000083452.1 ENSMUSG00000083452 ENSMUST00000122351 Gm14905 processed_pseudogene Interval_117282 chr4 121294704 121295517 + 0 NA Intergenic Intergenic 29807 ENSMUSG00000073764.2 ENSMUSG00000073764 ENSMUST00000097905 Gm12888 protein_coding Interval_49047 chr13 107355100 107355409 + 0 NA Intergenic Intergenic 7050 ENSMUSG00000114459.1 ENSMUSG00000114459 ENSMUST00000224355 Gm2736 processed_pseudogene Interval_163557 chr9 22090663 22091338 + 0 NA Intergenic Intergenic -1513 ENSMUSG00000111446.1 ENSMUSG00000111446 ENSMUST00000214545 Gm6581 processed_pseudogene Interval_119373 chr4 137306029 137306641 + 0 NA Intergenic Intergenic -19224 ENSMUSG00000089199.1 ENSMUSG00000089199 ENSMUST00000158574 Gm25772 snRNA Interval_2425 chr1 39235139 39236498 + 0 NA intron (ENSMUSG00000026077.15, intron 1 of 20) protein_coding-intron (ENSMUSG00000026077.15, intron 1 of 20) 40747 ENSMUSG00000092553.1 ENSMUSG00000092553 ENSMUST00000174365 Gm20428 processed_pseudogene Interval_97543 chr2 139602599 139603390 + 0 NA intron (ENSMUSG00000039092.9, intron 9 of 11) protein_coding-intron (ENSMUSG00000039092.9, intron 10 of 12) 14767 ENSMUSG00000098486.1 ENSMUSG00000098486 ENSMUST00000184747 Gm27385 snRNA Interval_126039 chr5 77029889 77030297 + 0 NA intron (ENSMUSG00000029248.14, intron 1 of 9) protein_coding-intron (ENSMUSG00000029248.14, intron 1 of 8) -6961 ENSMUSG00000029248.14 ENSMUSG00000029248 ENSMUST00000118941 Thegl protein_coding Interval_61570 chr15 82504630 82505411 + 0 NA TTS (ENSMUSG00000098745.1) miRNA-TTS (ENSMUSG00000098745.1) 393 ENSMUSG00000115931.1 ENSMUSG00000115931 ENSMUST00000230026 Gm27825 unprocessed_pseudogene Interval_104205 chr3 60563436 60563731 + 0 NA intron (ENSMUSG00000027763.13, intron 2 of 3) protein_coding-intron (ENSMUSG00000027763.13, intron 2 of 9) 27832 ENSMUSG00000104235.1 ENSMUSG00000104235 ENSMUST00000193609 Gm37589 TEC Interval_69902 chr17 3085352 3086146 + 0 NA Intergenic Intergenic -1709 ENSMUSG00000023795.16 ENSMUSG00000023795 ENSMUST00000127960 Pisd-ps2 transcribed_unprocessed_pseudogene Interval_102847 chr3 32128034 32129140 + 0 NA intron (ENSMUSG00000037610.15, intron 3 of 6) protein_coding-intron (ENSMUSG00000037610.15, intron 1 of 4) -27527 ENSMUSG00000037610.15 ENSMUSG00000037610 ENSMUST00000194796 Kcnmb2 protein_coding Interval_41528 chr12 115993043 115994417 + 0 NA promoter-TSS (ENSMUSG00000106239.1) processed_pseudogene-promoter-TSS (ENSMUSG00000106239.1) -360 ENSMUSG00000106239.1 ENSMUSG00000106239 ENSMUST00000199781 Gm9260 processed_pseudogene Interval_44999 chr13 51328334 51328613 + 0 NA Intergenic Intergenic -10448 ENSMUSG00000113426.1 ENSMUSG00000113426 ENSMUST00000221253 Gm6056 processed_pseudogene Interval_24542 chr11 34222753 34223841 + 0 NA Intergenic Intergenic -15208 ENSMUSG00000047861.2 ENSMUSG00000047861 ENSMUST00000060271 Foxi1 protein_coding Interval_136639 chr6 56877540 56878019 + 0 NA intron (ENSMUSG00000029781.7, intron 9 of 9) protein_coding-intron (ENSMUSG00000029781.7, intron 9 of 9) 28446 ENSMUSG00000029781.7 ENSMUSG00000029781 ENSMUST00000147159 Fkbp9 protein_coding Interval_26913 chr11 61528887 61529925 + 0 NA TTS (ENSMUSG00000085459.1) antisense-TTS (ENSMUSG00000085459.1) 1651 ENSMUSG00000085459.1 ENSMUSG00000085459 ENSMUST00000138136 Gm12272 antisense Interval_3682 chr1 60786846 60787288 + 0 NA intron (ENSMUSG00000085965.1, intron 1 of 3) lincRNA-intron (ENSMUSG00000085965.1, intron 1 of 3) -5233 ENSMUSG00000086795.1 ENSMUSG00000086795 ENSMUST00000145502 Gm11579 lincRNA Interval_75368 chr17 66156365 66156908 + 0 NA Intergenic Intergenic 12927 ENSMUSG00000035842.10 ENSMUSG00000035842 ENSMUST00000226095 Ddx11 protein_coding Interval_74883 chr17 57059310 57060997 + 0 NA promoter-TSS (ENSMUSG00000046329.14) protein_coding-promoter-TSS (ENSMUSG00000046329.14) -2130 ENSMUSG00000044279.15 ENSMUSG00000044279 ENSMUST00000163628 Crb3 protein_coding Interval_88929 chr2 13049333 13050261 + 0 NA Intergenic Intergenic 13671 ENSMUSG00000103143.1 ENSMUSG00000103143 ENSMUST00000193263 Gm37742 TEC Interval_4629 chr1 75533403 75533712 + 0 NA intron (ENSMUSG00000026213.15, intron 1 of 2) protein_coding-intron (ENSMUSG00000026213.15, intron 19 of 24) 4917 ENSMUSG00000026213.15 ENSMUSG00000026213 ENSMUST00000150560 Stk11ip protein_coding Interval_153903 chr8 10934915 10935659 + 0 NA Intergenic Intergenic 5400 ENSMUSG00000109480.1 ENSMUSG00000109480 ENSMUST00000207377 Gm45042 processed_pseudogene Interval_75740 chr17 70967255 70967889 + 0 NA promoter-TSS (ENSMUSG00000117079.1) lincRNA-promoter-TSS (ENSMUSG00000117079.1) -314 ENSMUSG00000117079.1 ENSMUSG00000117079 ENSMUST00000233521 Gm41611 lincRNA Interval_107505 chr3 108175045 108175374 + 0 NA intron (ENSMUSG00000085318.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000085318.1, intron 1 of 1) 8766 ENSMUSG00000085318.1 ENSMUSG00000085318 ENSMUST00000143109 Gm12524 lincRNA Interval_6091 chr1 96733330 96733882 + 0 NA Intergenic Intergenic -28425 ENSMUSG00000077255.1 ENSMUSG00000077255 ENSMUST00000104067 Gm26078 snoRNA Interval_51242 chr14 25492754 25493781 + 0 NA intron (ENSMUSG00000007817.15, intron 1 of 23) protein_coding-intron (ENSMUSG00000007817.15, intron 1 of 23) 13213 ENSMUSG00000114539.1 ENSMUSG00000114539 ENSMUST00000224666 Gm47921 sense_intronic Interval_16998 chr10 70336305 70337483 + 0 NA Intergenic Intergenic -1408 ENSMUSG00000112676.1 ENSMUSG00000112676 ENSMUST00000219977 Gm20108 processed_pseudogene Interval_80253 chr18 38564182 38565931 + 0 NA Intergenic Intergenic -17794 ENSMUSG00000118296.1 ENSMUSG00000118296 ENSMUST00000236625 Gm19100 processed_pseudogene Interval_41573 chr12 116452212 116452566 + 0 NA intron (ENSMUSG00000042029.7, intron 1 of 1) protein_coding-intron (ENSMUSG00000042029.7, intron 28 of 28) 209 ENSMUSG00000042029.7 ENSMUSG00000042029 ENSMUST00000222761 Ncapg2 protein_coding Interval_141439 chr6 128296304 128297241 + 0 NA intron (ENSMUSG00000030353.15, intron 1 of 1) protein_coding-intron (ENSMUSG00000030353.15, intron 1 of 11) 2670 ENSMUSG00000095262.2 ENSMUSG00000095262 ENSMUST00000179119 Gm21893 processed_pseudogene Interval_69295 chr16 91976969 91977178 + 0 NA Intergenic Intergenic -32925 ENSMUSG00000099268.1 ENSMUSG00000099268 ENSMUST00000184087 Gm27773 miRNA Interval_41847 chr13 3457261 3457718 + 0 NA exon (ENSMUSG00000113534.1, exon 1 of 1) processed_pseudogene-exon (ENSMUSG00000113534.1, exon 1 of 1) 281 ENSMUSG00000113534.1 ENSMUSG00000113534 ENSMUST00000223313 Gm19163 processed_pseudogene Interval_132245 chr5 143583178 143583753 + 0 NA Intergenic Intergenic 34757 ENSMUSG00000083012.9 ENSMUSG00000083012 ENSMUST00000198994 Fam220a protein_coding Interval_127716 chr5 107019952 107020865 + 0 NA Intergenic Intergenic -28428 ENSMUSG00000106554.1 ENSMUSG00000106554 ENSMUST00000199486 Gm33474 lincRNA Interval_238 KZ289068.1 266414 267382 + 0 NA NA NA NA NA Interval_162230 chr8 126242394 126242638 + 0 NA intron (ENSMUSG00000057060.8, intron 1 of 5) protein_coding-intron (ENSMUSG00000057060.8, intron 1 of 5) 103521 ENSMUSG00000057060.8 ENSMUSG00000057060 ENSMUST00000108759 Slc35f3 protein_coding Interval_54208 chr14 66279123 66281323 + 0 NA intron (ENSMUSG00000059456.13, intron 1 of 14) protein_coding-intron (ENSMUSG00000059456.13, intron 1 of 30) -16843 ENSMUSG00000022043.19 ENSMUSG00000022043 ENSMUST00000121006 Trim35 protein_coding Interval_124845 chr5 56396406 56396976 + 0 NA Intergenic Intergenic -17519 ENSMUSG00000106326.1 ENSMUSG00000106326 ENSMUST00000197497 Gm42977 transcribed_processed_pseudogene Interval_26639 chr11 59380076 59380395 + 0 NA TTS (ENSMUSG00000086910.1) antisense-TTS (ENSMUSG00000086910.1) -4578 ENSMUSG00000049291.6 ENSMUSG00000049291 ENSMUST00000061481 Prss38 protein_coding Interval_14012 chr10 25458211 25458575 + 0 NA intron (ENSMUSG00000019978.16, intron 2 of 11) protein_coding-intron (ENSMUSG00000019978.16, intron 3 of 19) -36230 ENSMUSG00000019978.16 ENSMUSG00000019978 ENSMUST00000219201 Epb41l2 protein_coding Interval_33702 chr11 117986396 117987736 + 0 NA intron (ENSMUSG00000017715.11, intron 1 of 9) protein_coding-intron (ENSMUSG00000017715.11, intron 1 of 9) -15204 ENSMUSG00000098958.1 ENSMUSG00000098958 ENSMUST00000184982 Mir6933 miRNA Interval_119305 chr4 136755217 136756298 + 0 NA intron (ENSMUSG00000028664.14, intron 3 of 15) protein_coding-intron (ENSMUSG00000028664.14, intron 3 of 15) -61717 ENSMUSG00000028664.14 ENSMUSG00000028664 ENSMUST00000144573 Ephb2 protein_coding Interval_158462 chr8 83862258 83863546 + 0 NA Intergenic Intergenic -37833 ENSMUSG00000013033.16 ENSMUSG00000013033 ENSMUST00000131018 Adgrl1 protein_coding Interval_134111 chr6 20520932 20521287 + 0 NA Intergenic Intergenic 449881 ENSMUSG00000106763.1 ENSMUSG00000106763 ENSMUST00000201133 Gm19102 processed_pseudogene Interval_37568 chr12 69926166 69927231 + 0 NA intron (ENSMUSG00000021066.9, intron 2 of 2) protein_coding-intron (ENSMUSG00000021066.9, intron 3 of 14) -4206 ENSMUSG00000065327.1 ENSMUSG00000065327 ENSMUST00000083393 Gm22058 misc_RNA Interval_62673 chr15 96170786 96171844 + 0 NA intron (ENSMUSG00000097536.2, intron 5 of 6) lincRNA-intron (ENSMUSG00000097536.2, intron 5 of 6) 82672 ENSMUSG00000097619.8 ENSMUSG00000097619 ENSMUST00000229950 4833422M21Rik processed_transcript Interval_120633 chr4 149798571 149800968 + 0 NA Intergenic Intergenic -6350 ENSMUSG00000081601.1 ENSMUSG00000081601 ENSMUST00000119178 Gm13065 processed_pseudogene Interval_134342 chr6 25800311 25801769 + 0 NA intron (ENSMUSG00000029676.15, intron 1 of 2) protein_coding-intron (ENSMUSG00000029676.15, intron 2 of 9) -3023 ENSMUSG00000029676.15 ENSMUSG00000029676 ENSMUST00000147970 Pot1a protein_coding Interval_160709 chr8 111743246 111744355 + 0 NA promoter-TSS (ENSMUSG00000031955.10) protein_coding-promoter-TSS (ENSMUSG00000031955.10) -11664 ENSMUSG00000031955.10 ENSMUSG00000031955 ENSMUST00000212147 Bcar1 protein_coding Interval_63020 chr15 98677018 98677810 + 0 NA promoter-TSS (ENSMUSG00000054855.13) protein_coding-promoter-TSS (ENSMUSG00000054855.13) 44 ENSMUSG00000054855.13 ENSMUSG00000054855 ENSMUST00000120997 Rnd1 protein_coding Interval_101412 chr2 181147462 181148437 + 0 NA exon (ENSMUSG00000016349.10, exon 8 of 8) protein_coding-exon (ENSMUSG00000016349.10, exon 8 of 8) 9065 ENSMUSG00000016349.10 ENSMUSG00000016349 ENSMUST00000055990 Eef1a2 protein_coding Interval_122819 chr5 25751642 25752018 + 0 NA Intergenic Intergenic -8209 ENSMUSG00000056367.14 ENSMUSG00000056367 ENSMUST00000198693 Actr3b protein_coding Interval_96309 chr2 121528132 121528339 + 0 NA intron (ENSMUSG00000027242.14, intron 7 of 8) protein_coding-intron (ENSMUSG00000027242.14, intron 7 of 12) 21480 ENSMUSG00000027242.14 ENSMUSG00000027242 ENSMUST00000110603 Wdr76 protein_coding Interval_149835 chr7 101911613 101912614 + 0 NA TTS (ENSMUSG00000030842.12) protein_coding-TTS (ENSMUSG00000030842.12) 296 ENSMUSG00000030842.12 ENSMUSG00000030842 ENSMUST00000211180 Lamtor1 protein_coding Interval_46396 chr13 64558000 64558393 + 0 NA Intergenic Intergenic -42342 ENSMUSG00000113609.1 ENSMUSG00000113609 ENSMUST00000221158 Gm47190 processed_pseudogene Interval_158415 chr8 83593971 83595137 + 0 NA promoter-TSS (ENSMUSG00000031708.17) protein_coding-promoter-TSS (ENSMUSG00000031708.17) -5459 ENSMUSG00000110690.1 ENSMUSG00000110690 ENSMUST00000212023 Gm18001 processed_pseudogene Interval_171239 chr9 115545554 115546925 + 0 NA Intergenic Intergenic 80479 ENSMUSG00000094630.1 ENSMUSG00000094630 ENSMUST00000082810 n-R5s92 rRNA Interval_55368 chr14 85646012 85646324 + 0 NA Intergenic Intergenic -9036 ENSMUSG00000115653.1 ENSMUSG00000115653 ENSMUST00000228318 Gm49059 processed_pseudogene Interval_14745 chr10 39550891 39551151 + 0 NA intron (ENSMUSG00000019843.14, intron 11 of 12) protein_coding-intron (ENSMUSG00000019843.14, intron 12 of 13) 7041 ENSMUSG00000087014.1 ENSMUSG00000087014 ENSMUST00000153722 Gm16364 antisense Interval_99627 chr2 163682345 163682693 + 0 NA intron (ENSMUSG00000035268.14, intron 1 of 3) protein_coding-intron (ENSMUSG00000035268.14, intron 1 of 3) 9760 ENSMUSG00000087129.1 ENSMUSG00000087129 ENSMUST00000154065 Gm16316 antisense Interval_47638 chr13 90552047 90552240 + 0 NA Intergenic Intergenic -31186 ENSMUSG00000094277.2 ENSMUSG00000094277 ENSMUST00000179654 Gm21726 processed_pseudogene Interval_134864 chr6 32795639 32795904 + 0 NA intron (ENSMUSG00000053768.13, intron 1 of 2) protein_coding-intron (ENSMUSG00000053768.13, intron 7 of 7) -43483 ENSMUSG00000106873.1 ENSMUSG00000106873 ENSMUST00000202626 BC049739 lincRNA Interval_138719 chr6 91382760 91383085 + 0 NA intron (ENSMUSG00000030093.7, intron 3 of 3) protein_coding-intron (ENSMUSG00000030093.7, intron 3 of 3) -17825 ENSMUSG00000030093.7 ENSMUSG00000030093 ENSMUST00000132936 Wnt7a protein_coding Interval_60784 chr15 76730289 76730481 + 0 NA exon (ENSMUSG00000033697.16, exon 7 of 12) protein_coding-exon (ENSMUSG00000033697.16, exon 7 of 12) -6540 ENSMUSG00000116138.1 ENSMUSG00000116138 ENSMUST00000229507 C030006K11Rik protein_coding Interval_92959 chr2 68978346 68978603 + 0 NA intron (ENSMUSG00000027035.10, intron 1 of 3) protein_coding-intron (ENSMUSG00000027035.10, intron 3 of 9) -10907 ENSMUSG00000104262.1 ENSMUSG00000104262 ENSMUST00000193717 Gm37747 TEC Interval_76415 chr17 80028523 80028899 + 0 NA TTS (ENSMUSG00000024095.15) protein_coding-TTS (ENSMUSG00000024095.15) -4803 ENSMUSG00000088183.1 ENSMUSG00000088183 ENSMUST00000157558 Gm22215 snRNA Interval_145766 chr7 38159473 38159693 + 0 NA Intergenic Intergenic 17088 ENSMUSG00000089230.1 ENSMUSG00000089230 ENSMUST00000158605 Gm22203 snRNA Interval_77335 chr17 88045549 88045762 + 0 NA intron (ENSMUSG00000005371.15, intron 1 of 22) protein_coding-intron (ENSMUSG00000005371.15, intron 1 of 22) 19588 ENSMUSG00000005371.15 ENSMUSG00000005371 ENSMUST00000235056 Fbxo11 protein_coding Interval_68690 chr16 84768052 84770312 + 0 NA Intergenic Intergenic -24376 ENSMUSG00000053062.16 ENSMUSG00000053062 ENSMUST00000138054 Jam2 protein_coding Interval_44541 chr13 45924915 45925918 + 0 NA intron (ENSMUSG00000046876.16, intron 1 of 2) protein_coding-intron (ENSMUSG00000046876.16, intron 2 of 7) -10624 ENSMUSG00000113987.1 ENSMUSG00000113987 ENSMUST00000222376 4930453C13Rik antisense Interval_172544 chrX 36476024 36476289 + 0 NA intron (ENSMUSG00000091556.8, intron 3 of 7) protein_coding-intron (ENSMUSG00000091556.8, intron 2 of 3) 15674 ENSMUSG00000091556.8 ENSMUSG00000091556 ENSMUST00000167210 Gm14569 protein_coding Interval_102512 chr3 27401182 27401631 + 0 NA Intergenic Intergenic 30055 ENSMUSG00000051136.1 ENSMUSG00000051136 ENSMUST00000057186 Ghsr protein_coding Interval_131061 chr5 134843970 134844479 + 0 NA Intergenic Intergenic 62509 ENSMUSG00000040576.8 ENSMUSG00000040576 ENSMUST00000047305 Tmem270 protein_coding Interval_80569 chr18 44308575 44309012 + 0 NA Intergenic Intergenic -6914 ENSMUSG00000117919.1 ENSMUSG00000117919 ENSMUST00000236086 Gm41717 lincRNA Interval_3265 chr1 55248822 55249154 + 0 NA TTS (ENSMUSG00000046994.9) protein_coding-TTS (ENSMUSG00000046994.9) 11811 ENSMUSG00000046994.9 ENSMUSG00000046994 ENSMUST00000061334 Mars2 protein_coding Interval_100354 chr2 168601149 168602258 + 0 NA promoter-TSS (ENSMUSG00000027544.16) protein_coding-promoter-TSS (ENSMUSG00000027544.16) -48 ENSMUSG00000027544.16 ENSMUSG00000027544 ENSMUST00000138546 Nfatc2 protein_coding Interval_167920 chr9 74283742 74283948 + 0 NA TTS (ENSMUSG00000044976.17) protein_coding-TTS (ENSMUSG00000044976.17) -78765 ENSMUSG00000084725.2 ENSMUSG00000084725 ENSMUST00000122776 Gm24141 snRNA Interval_105199 chr3 83783801 83784386 + 0 NA intron (ENSMUSG00000097250.1, intron 1 of 2) antisense-intron (ENSMUSG00000097250.1, intron 1 of 2) 5863 ENSMUSG00000097250.1 ENSMUSG00000097250 ENSMUST00000180472 Gm26771 antisense Interval_23024 chr11 19026100 19028112 + 0 NA Intergenic Intergenic -8137 ENSMUSG00000020160.18 ENSMUSG00000020160 ENSMUST00000137300 Meis1 protein_coding Interval_18054 chr10 81564239 81565278 + 0 NA promoter-TSS (ENSMUSG00000054452.10) protein_coding-promoter-TSS (ENSMUSG00000054452.10) 5270 ENSMUSG00000054452.10 ENSMUSG00000054452 ENSMUST00000218432 Tle5 protein_coding Interval_140026 chr6 113493872 113495937 + 0 NA exon (ENSMUSG00000045009.9, exon 4 of 4) protein_coding-exon (ENSMUSG00000045009.9, exon 4 of 4) 2887 ENSMUSG00000030284.11 ENSMUSG00000030284 ENSMUST00000129125 Creld1 protein_coding Interval_132435 chr5 144901397 144901818 + 0 NA intron (ENSMUSG00000038780.14, intron 2 of 18) protein_coding-intron (ENSMUSG00000038780.14, intron 2 of 17) -3613 ENSMUSG00000038780.14 ENSMUSG00000038780 ENSMUST00000198621 Smurf1 protein_coding Interval_173313 chrX 77968623 77969505 + 0 NA Intergenic Intergenic -19299 ENSMUSG00000082635.2 ENSMUSG00000082635 ENSMUST00000118262 Gm14750 unprocessed_pseudogene Interval_46411 chr13 64914510 64914712 + 0 NA TTS (ENSMUSG00000114179.1) processed_pseudogene-TTS (ENSMUSG00000114179.1) 639 ENSMUSG00000114179.1 ENSMUSG00000114179 ENSMUST00000221990 Eif1-ps2 processed_pseudogene Interval_63368 chr15 100644435 100645422 + 0 NA TTS (ENSMUSG00000098112.8) protein_coding-TTS (ENSMUSG00000098112.8) 4301 ENSMUSG00000098527.1 ENSMUSG00000098527 ENSMUST00000183874 Mir6961 miRNA Interval_100583 chr2 170261321 170261757 + 0 NA Intergenic Intergenic -23496 ENSMUSG00000084013.1 ENSMUSG00000084013 ENSMUST00000118388 Gm14270 processed_pseudogene Interval_166123 chr9 56871095 56871583 + 0 NA intron (ENSMUSG00000032911.6, intron 1 of 4) protein_coding-intron (ENSMUSG00000032911.6, intron 1 of 9) -6660 ENSMUSG00000045620.7 ENSMUSG00000045620 ENSMUST00000215694 Odf3l1 protein_coding Interval_144687 chr7 27529074 27529529 + 0 NA exon (ENSMUSG00000040424.15, exon 2 of 3) protein_coding-exon (ENSMUSG00000040424.15, exon 2 of 3) 3445 ENSMUSG00000003363.15 ENSMUSG00000003363 ENSMUST00000143903 Pld3 protein_coding Interval_160537 chr8 110493065 110493452 + 0 NA intron (ENSMUSG00000059854.8, intron 28 of 86) protein_coding-intron (ENSMUSG00000059854.8, intron 28 of 86) -5594 ENSMUSG00000093112.2 ENSMUSG00000093112 ENSMUST00000175371 Gm22701 misc_RNA Interval_21517 chr10 129074761 129074958 + 0 NA TTS (ENSMUSG00000059762.4) protein_coding-TTS (ENSMUSG00000059762.4) -5882 ENSMUSG00000107748.4 ENSMUSG00000107748 ENSMUST00000204515 Olfr766-ps1 protein_coding Interval_13765 chr10 21898487 21899587 + 0 NA exon (ENSMUSG00000019970.15, exon 2 of 2) protein_coding-exon (ENSMUSG00000019970.15, exon 2 of 2) -20145 ENSMUSG00000080607.1 ENSMUSG00000080607 ENSMUST00000116957 Gm23839 snoRNA Interval_79399 chr18 31661780 31662701 + 0 NA intron (ENSMUSG00000024260.14, intron 7 of 17) protein_coding-intron (ENSMUSG00000024260.14, intron 7 of 20) 27869 ENSMUSG00000024260.14 ENSMUSG00000024260 ENSMUST00000234772 Sap130 protein_coding Interval_13322 chr10 14851549 14851993 + 0 NA Intergenic Intergenic 79831 ENSMUSG00000112113.1 ENSMUSG00000112113 ENSMUST00000220206 Gm47698 lincRNA Interval_43108 chr13 24162429 24163241 + 0 NA intron (ENSMUSG00000021338.17, intron 5 of 5) protein_coding-intron (ENSMUSG00000021338.17, intron 5 of 37) -33062 ENSMUSG00000081707.1 ENSMUSG00000081707 ENSMUST00000120579 Gm11343 processed_pseudogene Interval_56791 chr14 122114025 122114786 + 0 NA intron (ENSMUSG00000025544.13, intron 1 of 3) protein_coding-intron (ENSMUSG00000025544.13, intron 1 of 16) -3533 ENSMUSG00000066538.5 ENSMUSG00000066538 ENSMUST00000168178 Gm6254 processed_pseudogene Interval_102547 chr3 27665009 27666730 + 0 NA intron (ENSMUSG00000039286.12, intron 1 of 4) protein_coding-intron (ENSMUSG00000039286.12, intron 1 of 25) 44529 ENSMUSG00000039286.12 ENSMUSG00000039286 ENSMUST00000193779 Fndc3b protein_coding Interval_118198 chr4 129490673 129492028 + 0 NA promoter-TSS (ENSMUSG00000000411.7) protein_coding-promoter-TSS (ENSMUSG00000000411.7) 110 ENSMUSG00000078554.2 ENSMUSG00000078554 ENSMUST00000135698 Fam229a protein_coding Interval_24503 chr11 33794134 33794478 + 0 NA intron (ENSMUSG00000053519.17, intron 1 of 8) protein_coding-intron (ENSMUSG00000053519.17, intron 1 of 7) 88756 ENSMUSG00000087328.1 ENSMUSG00000087328 ENSMUST00000125068 Gm12120 antisense Interval_57829 chr15 22487695 22488549 + 0 NA Intergenic Intergenic 214052 ENSMUSG00000098700.1 ENSMUSG00000098700 ENSMUST00000184465 Gm27525 miRNA Interval_67621 chr16 53110419 53110625 + 0 NA Intergenic Intergenic -163593 ENSMUSG00000077718.1 ENSMUSG00000077718 ENSMUST00000104530 Gm25723 snoRNA Interval_87294 chr19 47432033 47432361 + 0 NA intron (ENSMUSG00000053617.12, intron 1 of 13) protein_coding-intron (ENSMUSG00000053617.12, intron 1 of 14) -21838 ENSMUSG00000053617.12 ENSMUSG00000053617 ENSMUST00000237828 Sh3pxd2a protein_coding Interval_86389 chr19 39970925 39971674 + 0 NA Intergenic Intergenic -21125 ENSMUSG00000042248.4 ENSMUSG00000042248 ENSMUST00000049178 Cyp2c37 protein_coding Interval_122984 chr5 28167997 28169077 + 0 NA TTS (ENSMUSG00000106160.1) TEC-TTS (ENSMUSG00000106160.1) 303 ENSMUSG00000106160.1 ENSMUSG00000106160 ENSMUST00000199117 Gm43610 TEC Interval_29564 chr11 84930854 84931105 + 0 NA Intergenic Intergenic -14655 ENSMUSG00000020526.12 ENSMUSG00000020526 ENSMUST00000156046 Znhit3 protein_coding Interval_18105 chr10 82642810 82643136 + 0 NA intron (ENSMUSG00000034674.18, intron 2 of 6) protein_coding-intron (ENSMUSG00000034674.18, intron 4 of 9) 1532 ENSMUSG00000034674.18 ENSMUSG00000034674 ENSMUST00000142658 Tdg protein_coding Interval_39818 chr12 98712978 98714010 + 0 NA exon (ENSMUSG00000021009.15, exon 3 of 3) protein_coding-exon (ENSMUSG00000021009.15, exon 3 of 3) -29744 ENSMUSG00000021009.15 ENSMUSG00000021009 ENSMUST00000222071 Ptpn21 protein_coding Interval_39502 chr12 88730949 88731548 + 0 NA intron (ENSMUSG00000066392.12, intron 1 of 1) protein_coding-intron (ENSMUSG00000066392.12, intron 1 of 3) 98979 ENSMUSG00000113997.1 ENSMUSG00000113997 ENSMUST00000222440 1700040E09Rik lincRNA Interval_152857 chr7 138853987 138854489 + 0 NA intron (ENSMUSG00000041769.13, intron 3 of 4) protein_coding-intron (ENSMUSG00000041769.13, intron 2 of 8) -6599 ENSMUSG00000041769.13 ENSMUSG00000041769 ENSMUST00000172764 Ppp2r2d protein_coding Interval_164034 chr9 31055078 31055837 + 0 NA intron (ENSMUSG00000047412.16, intron 1 of 4) protein_coding-intron (ENSMUSG00000047412.16, intron 2 of 5) 2218 ENSMUSG00000047412.16 ENSMUSG00000047412 ENSMUST00000213202 Zbtb44 protein_coding Interval_113854 chr4 59372304 59372572 + 0 NA intron (ENSMUSG00000038578.15, intron 8 of 16) protein_coding-intron (ENSMUSG00000038578.15, intron 8 of 16) -3572 ENSMUSG00000083979.1 ENSMUSG00000083979 ENSMUST00000117967 Gm12527 processed_pseudogene Interval_131933 chr5 140878566 140878874 + 0 NA intron (ENSMUSG00000036526.8, intron 2 of 5) protein_coding-intron (ENSMUSG00000036526.8, intron 21 of 24) -48563 ENSMUSG00000000149.10 ENSMUSG00000000149 ENSMUST00000198447 Gna12 protein_coding Interval_44298 chr13 43466993 43467460 + 0 NA intron (ENSMUSG00000038546.9, intron 1 of 5) protein_coding-intron (ENSMUSG00000038546.9, intron 1 of 13) 11681 ENSMUSG00000038546.9 ENSMUSG00000038546 ENSMUST00000222023 Ranbp9 protein_coding Interval_91101 chr2 35048659 35049413 + 0 NA intron (ENSMUSG00000026874.10, intron 3 of 40) protein_coding-intron (ENSMUSG00000026874.10, intron 3 of 40) -29391 ENSMUSG00000026874.10 ENSMUSG00000026874 ENSMUST00000151628 Hc protein_coding Interval_7776 chr1 133616015 133616388 + 0 NA Intergenic Intergenic -6154 ENSMUSG00000090553.8 ENSMUSG00000090553 ENSMUST00000164574 Snrpe protein_coding Interval_84263 chr19 9090256 9090645 + 0 NA Intergenic Intergenic -2492 ENSMUSG00000024653.2 ENSMUSG00000024653 ENSMUST00000025554 Scgb1a1 protein_coding Interval_137175 chr6 69220748 69220971 + 0 NA Intergenic Intergenic 6574 ENSMUSG00000076545.2 ENSMUSG00000076545 ENSMUST00000103346 Igkv4-72 IG_V_gene Interval_150369 chr7 109965597 109966075 + 0 NA Intergenic Intergenic 20451 ENSMUSG00000047554.14 ENSMUSG00000047554 ENSMUST00000207300 Tmem41b protein_coding Interval_120157 chr4 143109157 143109431 + 0 NA exon (ENSMUSG00000057637.13, exon 10 of 10) protein_coding-exon (ENSMUSG00000057637.13, exon 10 of 10) 26868 ENSMUSG00000106597.1 ENSMUSG00000106597 ENSMUST00000197026 Mir7021 miRNA Interval_115564 chr4 100810131 100812549 + 0 NA intron (ENSMUSG00000028532.14, intron 1 of 26) protein_coding-intron (ENSMUSG00000028532.14, intron 1 of 26) -183370 ENSMUSG00000028532.14 ENSMUSG00000028532 ENSMUST00000136430 Cachd1 protein_coding Interval_73596 chr17 40916004 40916301 + 0 NA Intergenic Intergenic 1535 ENSMUSG00000088473.1 ENSMUSG00000088473 ENSMUST00000157848 Gm23078 snRNA Interval_108288 chr3 123332855 123333424 + 0 NA intron (ENSMUSG00000039234.11, intron 7 of 19) protein_coding-intron (ENSMUSG00000039234.11, intron 10 of 22) 52959 ENSMUSG00000028114.16 ENSMUSG00000028114 ENSMUST00000197628 Mettl14 protein_coding Interval_101755 chr3 9423355 9423806 + 0 NA intron (ENSMUSG00000097365.7, intron 3 of 3) lincRNA-intron (ENSMUSG00000097365.7, intron 3 of 3) 20500 ENSMUSG00000097365.7 ENSMUSG00000097365 ENSMUST00000181930 C030034L19Rik lincRNA Interval_1144 chr1 16104129 16106321 + 0 NA promoter-TSS (ENSMUSG00000025921.7) protein_coding-promoter-TSS (ENSMUSG00000025921.7) -2377 ENSMUSG00000043716.13 ENSMUSG00000043716 ENSMUST00000125005 Rpl7 protein_coding Interval_93258 chr2 71532312 71532520 + 0 NA TTS (ENSMUSG00000084946.2) antisense-TTS (ENSMUSG00000084946.2) 1636 ENSMUSG00000041911.3 ENSMUSG00000041911 ENSMUST00000172629 Dlx1 protein_coding Interval_41838 chr13 3219337 3219746 + 0 NA Intergenic Intergenic -53736 ENSMUSG00000113271.1 ENSMUSG00000113271 ENSMUST00000222272 Gm40653 lincRNA Interval_164114 chr9 31610057 31610411 + 0 NA Intergenic Intergenic -33536 ENSMUSG00000111153.1 ENSMUSG00000111153 ENSMUST00000217424 Gm18820 processed_pseudogene Interval_134240 chr6 23457549 23457985 + 0 NA intron (ENSMUSG00000017978.18, intron 9 of 29) protein_coding-intron (ENSMUSG00000017978.18, intron 8 of 29) -61979 ENSMUSG00000098877.1 ENSMUSG00000098877 ENSMUST00000185172 Gm27959 rRNA Interval_52328 chr14 45037174 45037500 + 0 NA Intergenic Intergenic -47536 ENSMUSG00000090709.2 ENSMUSG00000090709 ENSMUST00000228945 Gm17173 antisense Interval_26552 chr11 58786453 58786704 + 0 NA exon (ENSMUSG00000059504.7, exon 1 of 1) protein_coding-exon (ENSMUSG00000059504.7, exon 1 of 1) 3626 ENSMUSG00000059504.7 ENSMUSG00000059504 ENSMUST00000076393 Olfr314 protein_coding Interval_160532 chr8 110450370 110450712 + 0 NA intron (ENSMUSG00000059854.8, intron 21 of 25) protein_coding-intron (ENSMUSG00000059854.8, intron 21 of 86) -29074 ENSMUSG00000064393.1 ENSMUSG00000064393 ENSMUST00000082459 Gm23627 snRNA Interval_62585 chr15 94985529 94987183 + 0 NA TTS (ENSMUSG00000077447.1) snoRNA-TTS (ENSMUSG00000077447.1) 782 ENSMUSG00000077447.1 ENSMUSG00000077447 ENSMUST00000104259 Gm23129 snoRNA Interval_23966 chr11 28968649 28968925 + 0 NA Intergenic Intergenic 12063 ENSMUSG00000081695.1 ENSMUSG00000081695 ENSMUST00000121462 Rpsa-ps5 processed_pseudogene Interval_34189 chr11 121184578 121185183 + 0 NA intron (ENSMUSG00000025169.6, intron 7 of 8) protein_coding-intron (ENSMUSG00000025169.6, intron 7 of 8) -18955 ENSMUSG00000081835.1 ENSMUSG00000081835 ENSMUST00000119569 Gm11790 processed_pseudogene Interval_161561 chr8 121219805 121220817 + 0 NA intron (ENSMUSG00000092329.1, intron 1 of 15) protein_coding-intron (ENSMUSG00000092329.1, intron 1 of 15) -16709 ENSMUSG00000097097.2 ENSMUSG00000097097 ENSMUST00000212635 5033426O07Rik lincRNA Interval_97949 chr2 146048534 146049981 + 0 NA intron (ENSMUSG00000037143.17, intron 1 of 10) protein_coding-intron (ENSMUSG00000037143.17, intron 1 of 6) -114543 ENSMUSG00000001767.5 ENSMUSG00000001767 ENSMUST00000147904 Crnkl1 protein_coding Interval_96679 chr2 127099279 127099619 + 0 NA Intergenic Intergenic 22601 ENSMUSG00000034906.15 ENSMUSG00000034906 ENSMUST00000156625 Ncaph protein_coding Interval_126268 chr5 85647925 85648290 + 0 NA Intergenic Intergenic -72667 ENSMUSG00000104878.1 ENSMUSG00000104878 ENSMUST00000197581 Gm43567 lincRNA Interval_83918 chr19 5579457 5581028 + 0 NA Intergenic Intergenic 12217 ENSMUSG00000049562.6 ENSMUSG00000049562 ENSMUST00000096318 Ap5b1 protein_coding Interval_60527 chr15 74652272 74653342 + 0 NA Intergenic Intergenic 19763 ENSMUSG00000022602.14 ENSMUSG00000022602 ENSMUST00000110009 Arc protein_coding Interval_80992 chr18 52457843 52458277 + 0 NA Intergenic Intergenic -7662 ENSMUSG00000024528.8 ENSMUSG00000024528 ENSMUST00000237434 Srfbp1 protein_coding Interval_74067 chr17 46371827 46372107 + 0 NA Intergenic Intergenic -28089 ENSMUSG00000015597.17 ENSMUSG00000015597 ENSMUST00000136017 Zfp318 protein_coding Interval_136266 chr6 52421774 52422402 + 0 NA Intergenic Intergenic -64264 ENSMUSG00000084282.1 ENSMUSG00000084282 ENSMUST00000117393 Gm15054 processed_pseudogene Interval_149803 chr7 101666720 101666909 + 0 NA intron (ENSMUSG00000001829.17, intron 2 of 4) protein_coding-intron (ENSMUSG00000001829.17, intron 1 of 15) 3041 ENSMUSG00000001829.17 ENSMUSG00000001829 ENSMUST00000150832 Clpb protein_coding Interval_51940 chr14 34130922 34131440 + 0 NA Intergenic Intergenic -8267 ENSMUSG00000115101.1 ENSMUSG00000115101 ENSMUST00000227054 Gm7778 processed_pseudogene Interval_153540 chr8 3330662 3331834 + 0 NA Intergenic Intergenic -22189 ENSMUSG00000004568.13 ENSMUSG00000004568 ENSMUST00000145360 Arhgef18 protein_coding Interval_93184 chr2 70951891 70952283 + 0 NA Intergenic Intergenic 30097 ENSMUSG00000041975.17 ENSMUSG00000041975 ENSMUST00000124273 Mettl8 protein_coding Interval_27166 chr11 63616107 63616341 + 0 NA Intergenic Intergenic -15301 ENSMUSG00000082256.1 ENSMUSG00000082256 ENSMUST00000119770 Gm12287 processed_pseudogene Interval_68666 chr16 84200109 84200438 + 0 NA Intergenic Intergenic 19414 ENSMUSG00000116680.1 ENSMUSG00000116680 ENSMUST00000231505 Gm49562 processed_pseudogene Interval_118350 chr4 130819904 130821441 + 0 NA intron (ENSMUSG00000025743.14, intron 2 of 2) protein_coding-intron (ENSMUSG00000025743.14, intron 3 of 4) 5641 ENSMUSG00000097224.1 ENSMUSG00000097224 ENSMUST00000181227 Gm26716 antisense Interval_36390 chr12 43199078 43199561 + 0 NA Intergenic Intergenic -106824 ENSMUSG00000112904.1 ENSMUSG00000112904 ENSMUST00000217732 Gm47030 lincRNA Interval_65131 chr16 20052779 20053278 + 0 NA Intergenic Intergenic -44557 ENSMUSG00000062901.3 ENSMUSG00000062901 ENSMUST00000231842 Klhl24 protein_coding Interval_46282 chr13 63352844 63354028 + 0 NA intron (ENSMUSG00000021461.17, intron 6 of 13) protein_coding-intron (ENSMUSG00000021461.17, intron 6 of 15) 23880 ENSMUSG00000089854.2 ENSMUSG00000089854 ENSMUST00000160065 Gm16133 antisense Interval_26298 chr11 55931207 55931637 + 0 NA intron (ENSMUSG00000086020.1, intron 1 of 4) antisense-intron (ENSMUSG00000086020.1, intron 1 of 4) 109588 ENSMUSG00000037393.2 ENSMUSG00000037393 ENSMUST00000037682 Nmur2 protein_coding Interval_114534 chr4 82360092 82360623 + 0 NA intron (ENSMUSG00000008575.17, intron 3 of 4) protein_coding-intron (ENSMUSG00000008575.17, intron 3 of 11) -79053 ENSMUSG00000084595.1 ENSMUSG00000084595 ENSMUST00000122646 n-R5s188 rRNA Interval_139222 chr6 97291726 97292063 + 0 NA promoter-TSS (ENSMUSG00000030064.16) protein_coding-promoter-TSS (ENSMUSG00000030064.16) -633 ENSMUSG00000030064.16 ENSMUSG00000030064 ENSMUST00000124050 Frmd4b protein_coding Interval_53587 chr14 59605546 59606194 + 0 NA Intergenic Intergenic -7931 ENSMUSG00000021982.14 ENSMUSG00000021982 ENSMUST00000223842 Cdadc1 protein_coding Interval_11936 chr1 187322017 187323668 + 0 NA intron (ENSMUSG00000039210.16, intron 7 of 8) protein_coding-intron (ENSMUSG00000039210.16, intron 8 of 9) 54627 ENSMUSG00000104245.1 ENSMUSG00000104245 ENSMUST00000192285 Gm38155 antisense Interval_22970 chr11 18151762 18152767 + 0 NA Intergenic Intergenic 54680 ENSMUSG00000080826.1 ENSMUSG00000080826 ENSMUST00000121258 Gm12019 processed_pseudogene Interval_117445 chr4 123730259 123730771 + 0 NA Intergenic Intergenic -12334 ENSMUSG00000028648.13 ENSMUSG00000028648 ENSMUST00000137312 Ndufs5 protein_coding Interval_2075 chr1 36258682 36259060 + 0 NA Intergenic Intergenic -14151 ENSMUSG00000037470.14 ENSMUSG00000037470 ENSMUST00000192159 Uggt1 protein_coding Interval_44643 chr13 46892867 46893687 + 0 NA intron (ENSMUSG00000021375.11, intron 1 of 25) protein_coding-intron (ENSMUSG00000021375.11, intron 2 of 37) -9312 ENSMUSG00000084466.1 ENSMUSG00000084466 ENSMUST00000122517 Gm22960 snRNA Interval_50626 chr14 16803234 16804237 + 0 NA intron (ENSMUSG00000017491.9, intron 1 of 3) protein_coding-intron (ENSMUSG00000017491.9, intron 1 of 3) -142924 ENSMUSG00000114890.1 ENSMUSG00000114890 ENSMUST00000223705 Tpi-rs9 processed_pseudogene Interval_58230 chr15 31243196 31243990 + 0 NA intron (ENSMUSG00000039168.15, intron 2 of 3) protein_coding-intron (ENSMUSG00000039168.15, intron 2 of 3) 19033 ENSMUSG00000039168.15 ENSMUSG00000039168 ENSMUST00000185618 Dap protein_coding Interval_150563 chr7 112462780 112464130 + 0 NA intron (ENSMUSG00000030770.15, intron 2 of 13) protein_coding-intron (ENSMUSG00000030770.15, intron 1 of 12) 35550 ENSMUSG00000030770.15 ENSMUSG00000030770 ENSMUST00000126047 Parva protein_coding Interval_7174 chr1 127462380 127462979 + 0 NA intron (ENSMUSG00000036155.13, intron 12 of 15) protein_coding-intron (ENSMUSG00000036155.13, intron 14 of 17) 55903 ENSMUSG00000103390.1 ENSMUSG00000103390 ENSMUST00000195573 Gm38301 TEC Interval_90736 chr2 32199038 32199331 + 0 NA intron (ENSMUSG00000039262.16, intron 8 of 28) protein_coding-intron (ENSMUSG00000039262.16, intron 10 of 29) -13014 ENSMUSG00000039262.16 ENSMUSG00000039262 ENSMUST00000141053 Prrc2b protein_coding Interval_40597 chr12 105935568 105936432 + 0 NA Intergenic Intergenic 36159 ENSMUSG00000113835.1 ENSMUSG00000113835 ENSMUST00000220934 Gm19554 lincRNA Interval_121342 chr4 155113159 155114354 + 0 NA intron (ENSMUSG00000029049.14, intron 10 of 12) protein_coding-intron (ENSMUSG00000029049.14, intron 10 of 13) 27167 ENSMUSG00000029049.14 ENSMUSG00000029049 ENSMUST00000129415 Morn1 protein_coding Interval_115695 chr4 102477801 102478104 + 0 NA intron (ENSMUSG00000028525.16, intron 1 of 1) protein_coding-intron (ENSMUSG00000028525.16, intron 1 of 14) 222722 ENSMUSG00000028525.16 ENSMUSG00000028525 ENSMUST00000106901 Pde4b protein_coding Interval_11185 chr1 179959165 179960567 + 0 NA promoter-TSS (ENSMUSG00000026490.18) protein_coding-promoter-TSS (ENSMUSG00000026490.18) -1244 ENSMUSG00000026490.18 ENSMUSG00000026490 ENSMUST00000129754 Cdc42bpa protein_coding Interval_85571 chr19 28697935 28698399 + 0 NA intron (ENSMUSG00000097735.7, intron 4 of 4) lincRNA-intron (ENSMUSG00000097735.7, intron 4 of 4) 19939 ENSMUSG00000097735.7 ENSMUSG00000097735 ENSMUST00000181625 D930032P07Rik lincRNA Interval_133477 chr6 5481650 5482921 + 0 NA Intergenic Intergenic 13976 ENSMUSG00000019577.6 ENSMUSG00000019577 ENSMUST00000134068 Pdk4 protein_coding Interval_99879 chr2 165476007 165476356 + 0 NA Intergenic Intergenic -2982 ENSMUSG00000018459.15 ENSMUSG00000018459 ENSMUST00000147107 Slc13a3 protein_coding Interval_155841 chr8 40131650 40131923 + 0 NA Intergenic Intergenic 115072 ENSMUSG00000109815.1 ENSMUSG00000109815 ENSMUST00000209880 Gm7082 processed_pseudogene Interval_139750 chr6 108373972 108374393 + 0 NA intron (ENSMUSG00000030102.11, intron 10 of 22) protein_coding-intron (ENSMUSG00000030102.11, intron 13 of 61) -13252 ENSMUSG00000030102.11 ENSMUSG00000030102 ENSMUST00000205005 Itpr1 protein_coding Interval_39742 chr12 96352520 96352700 + 0 NA Intergenic Intergenic 60188 ENSMUSG00000112658.1 ENSMUSG00000112658 ENSMUST00000218908 Gm47395 processed_pseudogene Interval_55353 chr14 84306587 84308034 + 0 NA Intergenic Intergenic -84000 ENSMUSG00000115227.1 ENSMUSG00000115227 ENSMUST00000227972 Gm49057 processed_pseudogene Interval_111008 chr4 11170634 11171283 + 0 NA exon (ENSMUSG00000028211.11, exon 4 of 4) protein_coding-exon (ENSMUSG00000028211.11, exon 4 of 4) 14514 ENSMUSG00000028211.11 ENSMUSG00000028211 ENSMUST00000132346 Trp53inp1 protein_coding Interval_53945 chr14 63624284 63624794 + 0 NA intron (ENSMUSG00000035067.9, intron 1 of 2) protein_coding-intron (ENSMUSG00000035067.9, intron 1 of 2) -17167 ENSMUSG00000087652.1 ENSMUSG00000087652 ENSMUST00000137259 Gm15918 antisense Interval_91971 chr2 52095156 52095445 + 0 NA intron (ENSMUSG00000036202.16, intron 5 of 13) protein_coding-intron (ENSMUSG00000036202.16, intron 17 of 35) -16833 ENSMUSG00000036202.16 ENSMUSG00000036202 ENSMUST00000152178 Rif1 protein_coding Interval_109111 chr3 135862837 135863521 + 0 NA TTS (ENSMUSG00000106290.1) TEC-TTS (ENSMUSG00000106290.1) 2831 ENSMUSG00000106290.1 ENSMUSG00000106290 ENSMUST00000197889 Gm43429 TEC Interval_18292 chr10 84639660 84641343 + 0 NA intron (ENSMUSG00000034453.8, intron 2 of 6) protein_coding-intron (ENSMUSG00000034453.8, intron 9 of 27) 2367 ENSMUSG00000034453.8 ENSMUSG00000034453 ENSMUST00000213543 Polr3b protein_coding Interval_173338 chrX 81072877 81073201 + 0 NA intron (ENSMUSG00000025666.16, intron 1 of 3) protein_coding-intron (ENSMUSG00000025666.16, intron 1 of 2) 2334 ENSMUSG00000025666.16 ENSMUSG00000025666 ENSMUST00000026760 Tmem47 protein_coding Interval_10726 chr1 173582822 173583067 + 0 NA intron (ENSMUSG00000073491.11, intron 4 of 6) protein_coding-intron (ENSMUSG00000073491.11, intron 4 of 6) 16165 ENSMUSG00000073491.11 ENSMUSG00000073491 ENSMUST00000180215 Ifi213 protein_coding Interval_173212 chrX 74254178 74255434 + 0 NA promoter-TSS (ENSMUSG00000001964.14) protein_coding-promoter-TSS (ENSMUSG00000001964.14) -10 ENSMUSG00000001964.14 ENSMUSG00000001964 ENSMUST00000088313 Emd protein_coding Interval_120199 chr4 144214001 144214435 + 0 NA promoter-TSS (ENSMUSG00000046262.14) protein_coding-promoter-TSS (ENSMUSG00000046262.14) -1249 ENSMUSG00000046262.14 ENSMUSG00000046262 ENSMUST00000146836 C87977 protein_coding Interval_5446 chr1 88838186 88840652 + 0 NA Intergenic Intergenic 35991 ENSMUSG00000099848.1 ENSMUSG00000099848 ENSMUST00000185425 Gm29337 lincRNA Interval_138004 chr6 84085858 84086696 + 0 NA intron (ENSMUSG00000033788.15, intron 15 of 55) protein_coding-intron (ENSMUSG00000033788.15, intron 16 of 54) 20730 ENSMUSG00000087001.2 ENSMUSG00000087001 ENSMUST00000137673 Gm15475 antisense Interval_87828 chr19 56324990 56325675 + 0 NA intron (ENSMUSG00000049134.15, intron 37 of 40) protein_coding-intron (ENSMUSG00000049134.15, intron 37 of 40) 37336 ENSMUSG00000025075.14 ENSMUSG00000025075 ENSMUST00000165522 Habp2 protein_coding Interval_80716 chr18 46557144 46557485 + 0 NA TTS (ENSMUSG00000056130.10) protein_coding-TTS (ENSMUSG00000056130.10) 17219 ENSMUSG00000056130.10 ENSMUSG00000056130 ENSMUST00000149929 Ticam2 protein_coding Interval_42430 chr13 13468198 13469310 + 0 NA intron (ENSMUSG00000005397.8, intron 4 of 13) protein_coding-intron (ENSMUSG00000005397.8, intron 4 of 19) 13651 ENSMUSG00000113380.1 ENSMUSG00000113380 ENSMUST00000220813 Gm48682 antisense Interval_13168 chr10 12759864 12760223 + 0 NA intron (ENSMUSG00000019820.11, intron 3 of 17) protein_coding-intron (ENSMUSG00000019820.11, intron 2 of 73) 33931 ENSMUSG00000088516.1 ENSMUSG00000088516 ENSMUST00000157891 Gm23044 snRNA Interval_158647 chr8 84947108 84947564 + 0 NA intron (ENSMUSG00000048617.16, intron 1 of 6) protein_coding-intron (ENSMUSG00000048617.16, intron 1 of 5) -3845 ENSMUSG00000048617.16 ENSMUSG00000048617 ENSMUST00000152378 Rtbdn protein_coding Interval_156933 chr8 61892648 61892848 + 0 NA intron (ENSMUSG00000058056.16, intron 1 of 21) protein_coding-intron (ENSMUSG00000058056.16, intron 1 of 19) -20312 ENSMUSG00000086866.2 ENSMUSG00000086866 ENSMUST00000211790 4930512H18Rik antisense Interval_17174 chr10 73895860 73896570 + 0 NA intron (ENSMUSG00000052613.16, intron 1 of 34) protein_coding-intron (ENSMUSG00000052613.16, intron 1 of 30) -50841 ENSMUSG00000052613.16 ENSMUSG00000052613 ENSMUST00000192370 Pcdh15 protein_coding Interval_91804 chr2 49733811 49734830 + 0 NA intron (ENSMUSG00000026764.15, intron 1 of 1) protein_coding-intron (ENSMUSG00000026764.15, intron 15 of 25) 1709 ENSMUSG00000026764.15 ENSMUSG00000026764 ENSMUST00000132968 Kif5c protein_coding Interval_49558 chr13 112957485 112957690 + 0 NA intron (ENSMUSG00000042426.6, intron 17 of 26) protein_coding-intron (ENSMUSG00000042426.6, intron 17 of 26) 20002 ENSMUSG00000114477.1 ENSMUSG00000114477 ENSMUST00000225929 Gm8795 processed_pseudogene Interval_75044 chr17 62111430 62112289 + 0 NA Intergenic Intergenic 239484 ENSMUSG00000117160.1 ENSMUSG00000117160 ENSMUST00000232834 Gm49859 processed_pseudogene Interval_171574 chr9 119294117 119294510 + 0 NA intron (ENSMUSG00000036737.12, intron 3 of 18) protein_coding-intron (ENSMUSG00000036737.12, intron 3 of 17) 12444 ENSMUSG00000088713.1 ENSMUSG00000088713 ENSMUST00000158088 Gm22729 snoRNA Interval_67256 chr16 44886880 44887097 + 0 NA intron (ENSMUSG00000090176.1, intron 2 of 5) protein_coding-intron (ENSMUSG00000090176.1, intron 2 of 5) -5308 ENSMUSG00000116820.1 ENSMUSG00000116820 ENSMUST00000231755 Gm17928 processed_pseudogene Interval_122875 chr5 26691191 26692660 + 0 NA Intergenic Intergenic 92487 ENSMUSG00000105491.1 ENSMUSG00000105491 ENSMUST00000200355 Gm42844 processed_pseudogene Interval_154655 chr8 22388369 22388666 + 0 NA intron (ENSMUSG00000031482.9, intron 3 of 5) protein_coding-intron (ENSMUSG00000031482.9, intron 3 of 6) 10027 ENSMUSG00000031482.9 ENSMUSG00000031482 ENSMUST00000210020 Slc25a15 protein_coding Interval_20949 chr10 122678334 122679863 + 0 NA promoter-TSS (ENSMUSG00000099225.1) miRNA-promoter-TSS (ENSMUSG00000099225.1) -217 ENSMUSG00000099225.1 ENSMUSG00000099225 ENSMUST00000185165 Mir8104 miRNA Interval_53575 chr14 59470786 59471327 + 0 NA intron (ENSMUSG00000021981.10, intron 3 of 10) protein_coding-intron (ENSMUSG00000021981.10, intron 3 of 10) 30075 ENSMUSG00000021981.10 ENSMUSG00000021981 ENSMUST00000224893 Cab39l protein_coding Interval_81229 chr18 56649358 56650145 + 0 NA Intergenic Intergenic -18027 ENSMUSG00000118275.1 ENSMUSG00000118275 ENSMUST00000235398 Gm50289 processed_pseudogene Interval_15707 chr10 53859359 53859766 + 0 NA Intergenic Intergenic -56033 ENSMUSG00000112809.1 ENSMUSG00000112809 ENSMUST00000217870 Gm47915 lincRNA Interval_18329 chr10 84972277 84973240 + 0 NA intron (ENSMUSG00000035620.15, intron 5 of 7) protein_coding-intron (ENSMUSG00000035620.15, intron 6 of 9) 35365 ENSMUSG00000035620.15 ENSMUSG00000035620 ENSMUST00000214820 Ric8b protein_coding Interval_100655 chr2 170837778 170838855 + 0 NA intron (ENSMUSG00000027560.4, intron 5 of 7) protein_coding-intron (ENSMUSG00000027560.4, intron 5 of 7) 106509 ENSMUSG00000027560.4 ENSMUSG00000027560 ENSMUST00000029075 Dok5 protein_coding Interval_94730 chr2 93850436 93850930 + 0 NA promoter-TSS (ENSMUSG00000040272.14) protein_coding-promoter-TSS (ENSMUSG00000040272.14) -2754 ENSMUSG00000040272.14 ENSMUSG00000040272 ENSMUST00000148268 Accs protein_coding Interval_124873 chr5 58245385 58245693 + 0 NA Intergenic Intergenic -70011 ENSMUSG00000106146.1 ENSMUSG00000106146 ENSMUST00000198725 Gm43045 TEC Interval_160486 chr8 109940129 109941050 + 0 NA exon (ENSMUSG00000031732.12, exon 19 of 19) protein_coding-exon (ENSMUSG00000031732.12, exon 19 of 19) 15201 ENSMUSG00000085678.1 ENSMUSG00000085678 ENSMUST00000149990 Gm16349 processed_transcript Interval_467 chr1 5992480 5993559 + 0 NA Intergenic Intergenic 57026 ENSMUSG00000103090.1 ENSMUSG00000103090 ENSMUST00000191956 Gm19214 processed_pseudogene Interval_97099 chr2 131216673 131217473 + 0 NA Intergenic Intergenic 6676 ENSMUSG00000068264.11 ENSMUSG00000068264 ENSMUST00000110206 Ap5s1 protein_coding Interval_102951 chr3 33399388 33399630 + 0 NA Intergenic Intergenic -4662 ENSMUSG00000104203.1 ENSMUSG00000104203 ENSMUST00000191914 Gm37398 TEC Interval_16231 chr10 61575942 61577405 + 0 NA intron (ENSMUSG00000037151.8, intron 4 of 4) protein_coding-intron (ENSMUSG00000037151.8, intron 4 of 4) 5762 ENSMUSG00000112255.1 ENSMUSG00000112255 ENSMUST00000219114 Gm47594 TEC Interval_48690 chr13 101389547 101389837 + 0 NA intron (ENSMUSG00000100733.2, intron 5 of 8) lincRNA-intron (ENSMUSG00000100733.2, intron 5 of 8) 40940 ENSMUSG00000114295.1 ENSMUSG00000114295 ENSMUST00000226018 Gm2534 processed_pseudogene Interval_158453 chr8 83810107 83812113 + 0 NA Intergenic Intergenic 58192 ENSMUSG00000084682.1 ENSMUSG00000084682 ENSMUST00000122733 Gm22024 misc_RNA Interval_133106 chr5 149850202 149851399 + 0 NA intron (ENSMUSG00000107214.3, intron 2 of 2) processed_transcript-intron (ENSMUSG00000107214.3, intron 2 of 2) 3053 ENSMUSG00000107214.3 ENSMUSG00000107214 ENSMUST00000200855 4930500F04Rik processed_transcript Interval_45297 chr13 54143106 54143579 + 0 NA Intergenic Intergenic 2407 ENSMUSG00000114042.1 ENSMUSG00000114042 ENSMUST00000220543 Gm18473 processed_pseudogene Interval_6441 chr1 108770514 108770754 + 0 NA exon (ENSMUSG00000101097.1, exon 1 of 1) processed_pseudogene-exon (ENSMUSG00000101097.1, exon 1 of 1) 499 ENSMUSG00000101097.1 ENSMUSG00000101097 ENSMUST00000191467 Gm6679 processed_pseudogene Interval_152280 chr7 131344919 131345225 + 0 NA intron (ENSMUSG00000040177.10, intron 1 of 1) protein_coding-intron (ENSMUSG00000040177.10, intron 5 of 5) 10574 ENSMUSG00000030859.8 ENSMUSG00000030859 ENSMUST00000084505 Fam24a protein_coding Interval_100327 chr2 168423503 168423831 + 0 NA Intergenic Intergenic -5093 ENSMUSG00000082239.1 ENSMUSG00000082239 ENSMUST00000119539 Gm14234 processed_pseudogene Interval_136991 chr6 65715505 65715767 + 0 NA Intergenic Intergenic 14206 ENSMUSG00000049001.5 ENSMUSG00000049001 ENSMUST00000169795 Ndnf protein_coding Interval_59761 chr15 59089584 59090304 + 0 NA Intergenic Intergenic -7939 ENSMUSG00000022353.10 ENSMUSG00000022353 ENSMUST00000227797 Mtss1 protein_coding Interval_147280 chr7 65451434 65451743 + 0 NA intron (ENSMUSG00000030516.14, intron 2 of 4) protein_coding-intron (ENSMUSG00000030516.14, intron 2 of 4) 29633 ENSMUSG00000108533.1 ENSMUSG00000108533 ENSMUST00000207008 Gm44792 TEC Interval_139281 chr6 97848012 97848775 + 0 NA intron (ENSMUSG00000035158.15, intron 1 of 9) protein_coding-intron (ENSMUSG00000035158.15, intron 1 of 9) 42146 ENSMUSG00000083086.1 ENSMUSG00000083086 ENSMUST00000118062 Gm15531 processed_pseudogene Interval_55614 chr14 95833415 95834394 + 0 NA Intergenic Intergenic -47350 ENSMUSG00000034689.2 ENSMUSG00000034689 ENSMUST00000045892 Spertl protein_coding Interval_124392 chr5 45475714 45476596 + 0 NA Intergenic Intergenic -17371 ENSMUSG00000039682.12 ENSMUSG00000039682 ENSMUST00000146811 Lap3 protein_coding Interval_43675 chr13 34873988 34876162 + 0 NA promoter-TSS (ENSMUSG00000021413.9) protein_coding-promoter-TSS (ENSMUSG00000021413.9) 357 ENSMUSG00000113170.1 ENSMUSG00000113170 ENSMUST00000222088 Gm36839 lincRNA Interval_106703 chr3 99214346 99214802 + 0 NA intron (ENSMUSG00000004233.14, intron 5 of 6) protein_coding-intron (ENSMUSG00000004233.14, intron 4 of 5) 8152 ENSMUSG00000106197.1 ENSMUSG00000106197 ENSMUST00000197309 Gm42717 sense_intronic Interval_97514 chr2 138283730 138284535 + 0 NA exon (ENSMUSG00000062098.11, exon 4 of 4) protein_coding-exon (ENSMUSG00000062098.11, exon 4 of 4) 27470 ENSMUSG00000062098.11 ENSMUSG00000062098 ENSMUST00000075410 Btbd3 protein_coding Interval_119183 chr4 136059516 136060690 + 0 NA Intergenic Intergenic -7013 ENSMUSG00000059291.15 ENSMUSG00000059291 ENSMUST00000128733 Rpl11 protein_coding Interval_73301 chr17 36059584 36060205 + 0 NA Intergenic Intergenic -1523 ENSMUSG00000079492.2 ENSMUSG00000079492 ENSMUST00000113742 Gm11127 protein_coding Interval_32983 chr11 113511785 113512659 + 0 NA intron (ENSMUSG00000041654.15, intron 4 of 4) protein_coding-intron (ENSMUSG00000041654.15, intron 5 of 10) 44245 ENSMUSG00000078251.2 ENSMUSG00000078251 ENSMUST00000105048 Gm16487 pseudogene Interval_172051 chr9 124071419 124071609 + 0 NA Intergenic Intergenic -30436 ENSMUSG00000049103.14 ENSMUSG00000049103 ENSMUST00000165984 Ccr2 protein_coding Interval_111235 chr4 15434024 15434350 + 0 NA Intergenic Intergenic 51039 ENSMUSG00000096738.1 ENSMUSG00000096738 ENSMUST00000178536 Gm24317 snRNA Interval_98589 chr2 153435345 153435577 + 0 NA intron (ENSMUSG00000061411.12, intron 2 of 4) protein_coding-intron (ENSMUSG00000061411.12, intron 5 of 10) 21612 ENSMUSG00000082283.1 ENSMUSG00000082283 ENSMUST00000119815 Gm14472 processed_pseudogene Interval_24483 chr11 33592716 33592946 + 0 NA Intergenic Intergenic -13872 ENSMUSG00000020159.8 ENSMUSG00000020159 ENSMUST00000135350 Gabrp protein_coding Interval_94324 chr2 88897238 88897515 + 0 NA exon (ENSMUSG00000075114.4, exon 1 of 1) protein_coding-exon (ENSMUSG00000075114.4, exon 1 of 1) 4886 ENSMUSG00000075114.4 ENSMUSG00000075114 ENSMUST00000099810 Olfr1208 protein_coding Interval_15248 chr10 43718645 43719222 + 0 NA Intergenic Intergenic 24154 ENSMUSG00000111377.1 ENSMUSG00000111377 ENSMUST00000214129 Gm40634 lincRNA Interval_125677 chr5 73200849 73201062 + 0 NA intron (ENSMUSG00000070733.13, intron 2 of 11) protein_coding-intron (ENSMUSG00000070733.13, intron 2 of 62) -10538 ENSMUSG00000107109.1 ENSMUSG00000107109 ENSMUST00000201197 Gm42571 TEC Interval_110551 chr4 3824666 3824883 + 0 NA Intergenic Intergenic 10372 ENSMUSG00000088351.1 ENSMUSG00000088351 ENSMUST00000157726 Gm24016 snoRNA Interval_2627 chr1 42606287 42606667 + 0 NA intron (ENSMUSG00000060424.14, intron 3 of 3) lincRNA-intron (ENSMUSG00000060424.14, intron 3 of 3) -45249 ENSMUSG00000104199.1 ENSMUSG00000104199 ENSMUST00000191831 4930420N18Rik TEC Interval_75790 chr17 71388737 71389465 + 0 NA intron (ENSMUSG00000024054.14, intron 28 of 47) protein_coding-intron (ENSMUSG00000024054.14, intron 28 of 47) 4183 ENSMUSG00000103558.1 ENSMUSG00000103558 ENSMUST00000195774 Gm38220 TEC Interval_24184 chr11 31075932 31076310 + 0 NA intron (ENSMUSG00000020305.13, intron 7 of 9) protein_coding-intron (ENSMUSG00000020305.13, intron 7 of 9) -43882 ENSMUSG00000082049.1 ENSMUSG00000082049 ENSMUST00000120846 Gm12105 processed_pseudogene Interval_100285 chr2 168160688 168162277 + 0 NA intron (ENSMUSG00000118526.2, intron 7 of 7) unitary_pseudogene-intron (ENSMUSG00000118526.2, intron 7 of 7) -6969 ENSMUSG00000087648.1 ENSMUSG00000087648 ENSMUST00000129713 E130018N17Rik lincRNA Interval_10426 chr1 170770665 170771890 + 0 NA intron (ENSMUSG00000026663.6, intron 14 of 15) protein_coding-intron (ENSMUSG00000026663.6, intron 14 of 15) -19454 ENSMUSG00000096310.1 ENSMUSG00000096310 ENSMUST00000180190 Gm23523 snRNA Interval_113457 chr4 55120901 55122307 + 0 NA Intergenic Intergenic 5041 ENSMUSG00000082704.1 ENSMUSG00000082704 ENSMUST00000120116 Gm12515 processed_pseudogene Interval_43702 chr13 35387068 35387256 + 0 NA Intergenic Intergenic -8221 ENSMUSG00000114838.1 ENSMUSG00000114838 ENSMUST00000226101 Gm48703 lincRNA Interval_63765 chr15 103295617 103296134 + 0 NA TTS (ENSMUSG00000060992.9) protein_coding-TTS (ENSMUSG00000060992.9) -5190 ENSMUSG00000116308.1 ENSMUSG00000116308 ENSMUST00000231068 Gm49482 antisense Interval_91935 chr2 51756239 51756982 + 0 NA Intergenic Intergenic -24601 ENSMUSG00000085014.1 ENSMUSG00000085014 ENSMUST00000143870 Gm13490 lincRNA Interval_76017 chr17 74394945 74396038 + 0 NA promoter-TSS (ENSMUSG00000024069.14) protein_coding-promoter-TSS (ENSMUSG00000024069.14) -154 ENSMUSG00000024069.14 ENSMUSG00000024069 ENSMUST00000233180 Slc30a6 protein_coding Interval_77925 chr18 5619820 5620133 + 0 NA intron (ENSMUSG00000024238.15, intron 1 of 2) protein_coding-intron (ENSMUSG00000024238.15, intron 1 of 7) 5503 ENSMUSG00000080543.1 ENSMUSG00000080543 ENSMUST00000116893 Gm22709 miRNA Interval_61607 chr15 82928306 82928567 + 0 NA intron (ENSMUSG00000041852.15, intron 1 of 1) protein_coding-intron (ENSMUSG00000041852.15, intron 1 of 1) -28625 ENSMUSG00000041852.15 ENSMUSG00000041852 ENSMUST00000229439 Tcf20 protein_coding Interval_50065 chr14 7765717 7766324 + 0 NA intron (ENSMUSG00000072723.12, intron 5 of 6) transcribed_unprocessed_pseudogene-intron (ENSMUSG00000072723.12, intron 6 of 7) 16075 ENSMUSG00000084775.2 ENSMUSG00000084775 ENSMUST00000145085 Gm16741 lincRNA Interval_69751 chr16 96036289 96036522 + 0 NA promoter-TSS (ENSMUSG00000022914.17) protein_coding-promoter-TSS (ENSMUSG00000022914.17) 315 ENSMUSG00000085884.1 ENSMUSG00000085884 ENSMUST00000146222 Gm15342 processed_transcript Interval_41887 chr13 3893209 3894042 + 0 NA promoter-TSS (ENSMUSG00000021215.15) protein_coding-promoter-TSS (ENSMUSG00000021215.15) 6623 ENSMUSG00000113128.1 ENSMUSG00000113128 ENSMUST00000223370 Gm47813 TEC Interval_68029 chr16 64239974 64240310 + 0 NA Intergenic Intergenic -285012 ENSMUSG00000116722.1 ENSMUSG00000116722 ENSMUST00000231945 Gm49627 processed_pseudogene Interval_104531 chr3 67476964 67477600 + 0 NA TTS (ENSMUSG00000027774.16) protein_coding-TTS (ENSMUSG00000027774.16) 304 ENSMUSG00000103703.2 ENSMUSG00000103703 ENSMUST00000195639 Gm42568 TEC Interval_19560 chr10 103254009 103254684 + 0 NA Intergenic Intergenic -40909 ENSMUSG00000112622.1 ENSMUSG00000112622 ENSMUST00000220380 Gm47164 TEC Interval_173936 chrX 113297414 113298873 + 0 NA promoter-TSS (ENSMUSG00000025592.17) protein_coding-promoter-TSS (ENSMUSG00000025592.17) -109 ENSMUSG00000025592.17 ENSMUSG00000025592 ENSMUST00000123974 Dach2 protein_coding Interval_103192 chr3 36520610 36522830 + 0 NA promoter-TSS (ENSMUSG00000085007.3) protein_coding-promoter-TSS (ENSMUSG00000085007.3) 10664 ENSMUSG00000085007.3 ENSMUSG00000085007 ENSMUST00000199064 Gm11549 protein_coding Interval_75805 chr17 71516821 71517339 + 0 NA intron (ENSMUSG00000024056.10, intron 8 of 9) protein_coding-intron (ENSMUSG00000024056.10, intron 7 of 16) 9710 ENSMUSG00000024056.10 ENSMUSG00000024056 ENSMUST00000233011 Ndc80 protein_coding Interval_91026 chr2 34503784 34505665 + 0 NA intron (ENSMUSG00000038696.14, intron 5 of 11) protein_coding-intron (ENSMUSG00000038696.14, intron 4 of 10) -60275 ENSMUSG00000081992.1 ENSMUSG00000081992 ENSMUST00000119822 Gm13408 processed_pseudogene Interval_27034 chr11 62481913 62482851 + 0 NA promoter-TSS (ENSMUSG00000086310.1) antisense-promoter-TSS (ENSMUSG00000086310.1) -415 ENSMUSG00000086310.1 ENSMUSG00000086310 ENSMUST00000153718 Gm12278 antisense Interval_113546 chr4 56185595 56185880 + 0 NA Intergenic Intergenic 22797 ENSMUSG00000081290.1 ENSMUSG00000081290 ENSMUST00000117493 Gm12520 processed_pseudogene Interval_126371 chr5 87452089 87453314 + 0 NA Intergenic Intergenic -28498 ENSMUSG00000061906.5 ENSMUSG00000061906 ENSMUST00000072818 Ugt2b38 protein_coding Interval_115137 chr4 91347473 91348613 + 0 NA intron (ENSMUSG00000008489.18, intron 1 of 7) protein_coding-intron (ENSMUSG00000008489.18, intron 1 of 6) 8639 ENSMUSG00000008489.18 ENSMUSG00000008489 ENSMUST00000176151 Elavl2 protein_coding Interval_104061 chr3 57846829 57848345 + 0 NA promoter-TSS (ENSMUSG00000027805.16) protein_coding-promoter-TSS (ENSMUSG00000027805.16) -1709 ENSMUSG00000027805.16 ENSMUSG00000027805 ENSMUST00000120289 Pfn2 protein_coding Interval_101505 chr3 3200732 3201859 + 0 NA Intergenic Intergenic 13262 ENSMUSG00000103416.1 ENSMUSG00000103416 ENSMUST00000191986 Gm37338 TEC Interval_87638 chr19 53902701 53904172 + 0 NA promoter-TSS (ENSMUSG00000024975.13) protein_coding-promoter-TSS (ENSMUSG00000024975.13) 9606 ENSMUSG00000024975.13 ENSMUSG00000024975 ENSMUST00000165617 Pdcd4 protein_coding Interval_32744 chr11 110290211 110290848 + 0 NA intron (ENSMUSG00000018800.14, intron 24 of 27) protein_coding-intron (ENSMUSG00000018800.14, intron 23 of 38) -38753 ENSMUSG00000044749.13 ENSMUSG00000044749 ENSMUST00000150988 Abca6 protein_coding Interval_1773 chr1 33684480 33684877 + 0 NA Intergenic Intergenic -10450 ENSMUSG00000102198.1 ENSMUSG00000102198 ENSMUST00000193126 Gm38173 TEC Interval_126661 chr5 91876767 91877013 + 0 NA Intergenic Intergenic 36513 ENSMUSG00000107301.1 ENSMUSG00000107301 ENSMUST00000202249 Gm43688 lincRNA Interval_81382 chr18 60011044 60011316 + 0 NA Intergenic Intergenic 113626 ENSMUSG00000117999.1 ENSMUSG00000117999 ENSMUST00000237612 Gm18217 processed_pseudogene Interval_163565 chr9 22224724 22227504 + 0 NA intron (ENSMUSG00000057982.8, intron 1 of 2) protein_coding-intron (ENSMUSG00000057982.8, intron 1 of 5) 400 ENSMUSG00000057982.8 ENSMUSG00000057982 ENSMUST00000215583 Zfp809 protein_coding Interval_68258 chr16 71434663 71435462 + 0 NA Intergenic Intergenic 185178 ENSMUSG00000116982.1 ENSMUSG00000116982 ENSMUST00000231541 4930567J20Rik lincRNA Interval_13785 chr10 22103652 22104124 + 0 NA TTS (ENSMUSG00000097739.1) transcribed_unprocessed_pseudogene-TTS (ENSMUSG00000097739.1) 3237 ENSMUSG00000097739.1 ENSMUSG00000097739 ENSMUST00000181352 Gm2539 transcribed_unprocessed_pseudogene Interval_145557 chr7 35610773 35611699 + 0 NA promoter-TSS (ENSMUSG00000034867.16) protein_coding-promoter-TSS (ENSMUSG00000034867.16) -8243 ENSMUSG00000034867.16 ENSMUSG00000034867 ENSMUST00000206632 Ankrd27 protein_coding Interval_71252 chr17 21615598 21618059 + 0 NA intron (ENSMUSG00000117013.1, intron 1 of 4) transcribed_processed_pseudogene-intron (ENSMUSG00000117013.1, intron 1 of 4) 1327 ENSMUSG00000117013.1 ENSMUSG00000117013 ENSMUST00000232774 Gm30531 transcribed_processed_pseudogene Interval_150988 chr7 117423921 117424149 + 0 NA intron (ENSMUSG00000030657.11, intron 1 of 6) protein_coding-intron (ENSMUSG00000030657.11, intron 1 of 11) 42173 ENSMUSG00000108693.1 ENSMUSG00000108693 ENSMUST00000205957 Gm45153 TEC Interval_47091 chr13 75609677 75609909 + 0 NA Intergenic Intergenic -35103 ENSMUSG00000074800.4 ENSMUSG00000074800 ENSMUST00000099371 Gm4149 processed_pseudogene Interval_100659 chr2 170865428 170865751 + 0 NA intron (ENSMUSG00000027560.4, intron 6 of 7) protein_coding-intron (ENSMUSG00000027560.4, intron 6 of 7) 89235 ENSMUSG00000080955.1 ENSMUSG00000080955 ENSMUST00000117955 Gm14263 processed_pseudogene Interval_41825 chr12 119969997 119970213 + 0 NA intron (ENSMUSG00000048004.15, intron 1 of 4) protein_coding-intron (ENSMUSG00000048004.15, intron 1 of 3) 24283 ENSMUSG00000048004.15 ENSMUSG00000048004 ENSMUST00000184069 Tmem196 protein_coding Interval_114595 chr4 82871243 82871475 + 0 NA Intergenic Intergenic -11798 ENSMUSG00000028403.15 ENSMUSG00000028403 ENSMUST00000156055 Zdhhc21 protein_coding Interval_14676 chr10 38830557 38830793 + 0 NA Intergenic Intergenic -8896 ENSMUSG00000094311.1 ENSMUSG00000094311 ENSMUST00000179279 Rfpl4b protein_coding Interval_116697 chr4 116701560 116701817 + 0 NA TTS (ENSMUSG00000028690.4) protein_coding-TTS (ENSMUSG00000028690.4) 6600 ENSMUSG00000028690.4 ENSMUSG00000028690 ENSMUST00000143330 Mmachc protein_coding Interval_53721 chr14 61165359 61165921 + 0 NA intron (ENSMUSG00000048279.19, intron 2 of 8) protein_coding-intron (ENSMUSG00000048279.19, intron 2 of 9) -27833 ENSMUSG00000048279.19 ENSMUSG00000048279 ENSMUST00000229692 Sacs protein_coding Interval_170584 chr9 109020611 109021539 + 0 NA intron (ENSMUSG00000025648.18, intron 1 of 5) protein_coding-intron (ENSMUSG00000025648.18, intron 9 of 13) 22187 ENSMUSG00000025648.18 ENSMUSG00000025648 ENSMUST00000198763 Pfkfb4 protein_coding Interval_57326 chr15 8780939 8781977 + 0 NA Intergenic Intergenic -71049 ENSMUSG00000005360.14 ENSMUSG00000005360 ENSMUST00000126747 Slc1a3 protein_coding Interval_71223 chr17 21370048 21370687 + 0 NA intron (ENSMUSG00000116768.1, intron 1 of 2) processed_pseudogene-intron (ENSMUSG00000116768.1, intron 1 of 2) 3520 ENSMUSG00000116768.1 ENSMUSG00000116768 ENSMUST00000231877 Gm18269 processed_pseudogene Interval_22626 chr11 12375396 12375604 + 0 NA intron (ENSMUSG00000020173.17, intron 2 of 5) protein_coding-intron (ENSMUSG00000020173.17, intron 4 of 14) 36644 ENSMUSG00000020173.17 ENSMUSG00000020173 ENSMUST00000146067 Cobl protein_coding Interval_133476 chr6 5469754 5470653 + 0 NA Intergenic Intergenic 26058 ENSMUSG00000019577.6 ENSMUSG00000019577 ENSMUST00000134068 Pdk4 protein_coding Interval_151960 chr7 127799954 127801498 + 0 NA promoter-TSS (ENSMUSG00000042289.11) protein_coding-promoter-TSS (ENSMUSG00000042289.11) 79 ENSMUSG00000042289.11 ENSMUSG00000042289 ENSMUST00000138432 Hsd3b7 protein_coding Interval_129647 chr5 121519245 121520050 + 0 NA exon (ENSMUSG00000072647.6, exon 1 of 1) protein_coding-exon (ENSMUSG00000072647.6, exon 1 of 1) 11248 ENSMUSG00000082265.1 ENSMUSG00000082265 ENSMUST00000122152 Gm15547 processed_pseudogene Interval_114955 chr4 87657911 87658798 + 0 NA Intergenic Intergenic 77565 ENSMUSG00000082443.1 ENSMUSG00000082443 ENSMUST00000118382 Gm12604 processed_pseudogene Interval_39702 chr12 93669033 93669805 + 0 NA Intergenic Intergenic -47001 ENSMUSG00000112982.1 ENSMUSG00000112982 ENSMUST00000221024 Gm21007 processed_pseudogene Interval_109459 chr3 142649929 142651246 + 0 NA Intergenic Intergenic -8361 ENSMUSG00000105317.2 ENSMUSG00000105317 ENSMUST00000198870 Gbp2-ps unprocessed_pseudogene Interval_100468 chr2 169233328 169234184 + 0 NA Intergenic Intergenic -1235 ENSMUSG00000085369.1 ENSMUSG00000085369 ENSMUST00000152494 9430093N23Rik lincRNA Interval_85137 chr19 23104223 23105215 + 0 NA Intergenic Intergenic -28795 ENSMUSG00000097930.2 ENSMUSG00000097930 ENSMUST00000181623 C330002G04Rik lincRNA Interval_90086 chr2 27851753 27852479 + 0 NA Intergenic Intergenic 34936 ENSMUSG00000085766.1 ENSMUSG00000085766 ENSMUST00000154246 2810430I11Rik processed_transcript Interval_106198 chr3 94536953 94537218 + 0 NA exon (ENSMUSG00000104631.1, exon 1 of 1) sense_intronic-exon (ENSMUSG00000104631.1, exon 1 of 1) 403 ENSMUSG00000104631.1 ENSMUSG00000104631 ENSMUST00000196327 Gm43774 sense_intronic Interval_84809 chr19 16955396 16956534 + 0 NA promoter-TSS (ENSMUSG00000039126.10) protein_coding-promoter-TSS (ENSMUSG00000039126.10) 36632 ENSMUSG00000118126.1 ENSMUSG00000118126 ENSMUST00000236072 Gm32341 lincRNA Interval_153806 chr8 8761933 8762899 + 0 NA intron (ENSMUSG00000109371.1, intron 2 of 4) lincRNA-intron (ENSMUSG00000109371.1, intron 2 of 4) 26446 ENSMUSG00000109062.1 ENSMUSG00000109062 ENSMUST00000209128 Gm44622 lincRNA Interval_52278 chr14 43668826 43669535 + 0 NA intron (ENSMUSG00000115050.1, intron 2 of 2) lincRNA-intron (ENSMUSG00000115050.1, intron 2 of 2) 8019 ENSMUSG00000093968.1 ENSMUSG00000093968 ENSMUST00000095981 Gm8165 protein_coding Interval_85778 chr19 31044833 31046012 + 0 NA intron (ENSMUSG00000052920.16, intron 3 of 17) protein_coding-intron (ENSMUSG00000052920.16, intron 3 of 17) -37415 ENSMUSG00000053536.7 ENSMUSG00000053536 ENSMUST00000066039 Cstf2t protein_coding Interval_146664 chr7 49281730 49282000 + 0 NA intron (ENSMUSG00000052512.17, intron 1 of 10) protein_coding-intron (ENSMUSG00000052512.17, intron 1 of 37) -61609 ENSMUSG00000052512.17 ENSMUSG00000052512 ENSMUST00000183715 Nav2 protein_coding Interval_164169 chr9 32135758 32138078 + 0 NA intron (ENSMUSG00000041444.14, intron 1 of 5) protein_coding-intron (ENSMUSG00000041444.14, intron 2 of 21) 38250 ENSMUSG00000111382.1 ENSMUSG00000111382 ENSMUST00000213983 Gm47536 processed_pseudogene Interval_61502 chr15 82022447 82022698 + 0 NA promoter-TSS (ENSMUSG00000022471.14) protein_coding-promoter-TSS (ENSMUSG00000022471.14) -5560 ENSMUSG00000022471.14 ENSMUSG00000022471 ENSMUST00000164775 Xrcc6 protein_coding Interval_67896 chr16 58858181 58858942 + 0 NA Intergenic Intergenic 16207 ENSMUSG00000063137.5 ENSMUSG00000063137 ENSMUST00000072853 Olfr177 protein_coding Interval_105952 chr3 90273662 90274464 + 0 NA intron (ENSMUSG00000042404.16, intron 14 of 15) protein_coding-intron (ENSMUSG00000042404.16, intron 16 of 27) 3914 ENSMUSG00000099199.1 ENSMUSG00000099199 ENSMUST00000183900 Mir7012 miRNA Interval_140647 chr6 120301043 120301535 + 0 NA Intergenic Intergenic -6730 ENSMUSG00000041372.10 ENSMUSG00000041372 ENSMUST00000212457 B4galnt3 protein_coding Interval_115634 chr4 101515880 101516673 + 0 NA intron (ENSMUSG00000028528.17, intron 1 of 2) protein_coding-intron (ENSMUSG00000028528.17, intron 1 of 18) 19645 ENSMUSG00000028528.17 ENSMUSG00000028528 ENSMUST00000106933 Dnajc6 protein_coding Interval_22961 chr11 18037130 18037338 + 0 NA Intergenic Intergenic -58752 ENSMUSG00000085453.1 ENSMUSG00000085453 ENSMUST00000150694 Gm12018 lincRNA Interval_134792 chr6 31568101 31568542 + 0 NA Intergenic Intergenic -6646 ENSMUSG00000086732.1 ENSMUSG00000086732 ENSMUST00000150540 Gm6117 lincRNA Interval_82652 chr18 75649486 75649951 + 0 NA intron (ENSMUSG00000052928.9, intron 1 of 11) protein_coding-intron (ENSMUSG00000052928.9, intron 1 of 11) -12445 ENSMUSG00000052928.9 ENSMUSG00000052928 ENSMUST00000235147 Ctif protein_coding Interval_158027 chr8 78127946 78128225 + 0 NA Intergenic Intergenic 20125 ENSMUSG00000109948.1 ENSMUSG00000109948 ENSMUST00000210236 Gm45288 processed_pseudogene Interval_124757 chr5 53692290 53693083 + 0 NA Intergenic Intergenic 14874 ENSMUSG00000029193.7 ENSMUSG00000029193 ENSMUST00000202946 Cckar protein_coding Interval_156340 chr8 47543899 47544513 + 0 NA TTS (ENSMUSG00000031568.16) protein_coding-TTS (ENSMUSG00000031568.16) -6252 ENSMUSG00000031568.16 ENSMUSG00000031568 ENSMUST00000183107 Rwdd4a protein_coding Interval_152957 chr7 140047682 140049786 + 0 NA exon (ENSMUSG00000025469.10, exon 1 of 2) protein_coding-exon (ENSMUSG00000025469.10, exon 1 of 2) 354 ENSMUSG00000025469.10 ENSMUSG00000025469 ENSMUST00000172775 Msx3 protein_coding Interval_122570 chr5 23849995 23851410 + 0 NA intron (ENSMUSG00000097180.5, intron 1 of 2) lincRNA-intron (ENSMUSG00000097180.5, intron 1 of 3) 101 ENSMUSG00000097180.5 ENSMUSG00000097180 ENSMUST00000197551 2700038G22Rik lincRNA Interval_13936 chr10 24819378 24820283 + 0 NA TTS (ENSMUSG00000019989.8) protein_coding-TTS (ENSMUSG00000019989.8) 16342 ENSMUSG00000019989.8 ENSMUSG00000019989 ENSMUST00000220209 Enpp3 protein_coding Interval_79348 chr18 30884722 30885705 + 0 NA Intergenic Intergenic -276323 ENSMUSG00000117526.1 ENSMUSG00000117526 ENSMUST00000235078 Gm41780 processed_pseudogene Interval_25643 chr11 50370799 50371782 + 0 NA Intergenic Intergenic -11889 ENSMUSG00000007850.16 ENSMUSG00000007850 ENSMUST00000151537 Hnrnph1 protein_coding Interval_4488 chr1 74519005 74519263 + 0 NA intron (ENSMUSG00000026174.9, intron 3 of 6) protein_coding-intron (ENSMUSG00000026174.9, intron 3 of 7) -4393 ENSMUSG00000026174.9 ENSMUSG00000026174 ENSMUST00000147810 Cnot9 protein_coding Interval_14850 chr10 40490018 40490211 + 0 NA Intergenic Intergenic -58778 ENSMUSG00000111251.1 ENSMUSG00000111251 ENSMUST00000214826 Gm18671 processed_pseudogene Interval_127991 chr5 110117201 110117521 + 0 NA TTS (ENSMUSG00000081865.1) processed_pseudogene-TTS (ENSMUSG00000081865.1) 1488 ENSMUSG00000081865.1 ENSMUSG00000081865 ENSMUST00000118871 Gm15484 processed_pseudogene Interval_147806 chr7 73659377 73660187 + 0 NA Intergenic Intergenic -2266 ENSMUSG00000089391.1 ENSMUSG00000089391 ENSMUST00000158766 Gm23020 misc_RNA Interval_107705 chr3 111483442 111483687 + 0 NA Intergenic Intergenic -160707 ENSMUSG00000106100.1 ENSMUSG00000106100 ENSMUST00000199881 Gm9314 processed_pseudogene Interval_54649 chr14 72792730 72793083 + 0 NA intron (ENSMUSG00000115532.1, intron 1 of 5) lincRNA-intron (ENSMUSG00000115532.1, intron 1 of 5) 3553 ENSMUSG00000115532.1 ENSMUSG00000115532 ENSMUST00000227565 Gm41206 lincRNA Interval_29205 chr11 81529611 81529946 + 0 NA intron (ENSMUSG00000020704.13, intron 1 of 9) protein_coding-intron (ENSMUSG00000020704.13, intron 1 of 9) 43695 ENSMUSG00000080980.1 ENSMUSG00000080980 ENSMUST00000117522 1700071K01Rik processed_pseudogene Interval_15074 chr10 42346406 42346749 + 0 NA intron (ENSMUSG00000038302.14, intron 6 of 10) protein_coding-intron (ENSMUSG00000038302.14, intron 8 of 12) -15314 ENSMUSG00000081873.1 ENSMUSG00000081873 ENSMUST00000120526 Gm15197 processed_pseudogene Interval_174077 chrX 134393874 134394530 + 0 NA Intergenic Intergenic -10426 ENSMUSG00000000223.13 ENSMUSG00000000223 ENSMUST00000000228 Drp2 protein_coding Interval_77816 chr18 3961316 3962043 + 0 NA Intergenic Intergenic -48577 ENSMUSG00000117395.1 ENSMUSG00000117395 ENSMUST00000234528 Gm7378 processed_pseudogene Interval_27994 chr11 72037956 72038145 + 0 NA promoter-TSS (ENSMUSG00000040554.10) protein_coding-promoter-TSS (ENSMUSG00000040554.10) -541 ENSMUSG00000040554.10 ENSMUSG00000040554 ENSMUST00000059082 Aipl1 protein_coding Interval_169805 chr9 101718020 101718308 + 0 NA Intergenic Intergenic 39541 ENSMUSG00000111696.1 ENSMUSG00000111696 ENSMUST00000215480 Gm47932 processed_pseudogene Interval_161362 chr8 119956330 119957033 + 0 NA exon (ENSMUSG00000031826.20, exon 14 of 14) protein_coding-exon (ENSMUSG00000031826.20, exon 14 of 14) 10281 ENSMUSG00000031826.20 ENSMUSG00000031826 ENSMUST00000139648 Usp10 protein_coding Interval_127478 chr5 104333398 104333971 + 0 NA intron (ENSMUSG00000053863.3, intron 2 of 2) protein_coding-intron (ENSMUSG00000053863.3, intron 2 of 2) 8355 ENSMUSG00000053863.3 ENSMUSG00000053863 ENSMUST00000066207 Mepe protein_coding Interval_121719 chr5 5693559 5694634 + 0 NA promoter-TSS (ENSMUSG00000015653.13) protein_coding-promoter-TSS (ENSMUSG00000015653.13) -2762 ENSMUSG00000105996.1 ENSMUSG00000105996 ENSMUST00000197972 Gm43219 TEC Interval_26541 chr11 58668913 58669726 + 0 NA exon (ENSMUSG00000063549.4, exon 7 of 7) protein_coding-exon (ENSMUSG00000063549.4, exon 7 of 7) 8141 ENSMUSG00000088222.1 ENSMUSG00000088222 ENSMUST00000157597 Gm22599 snoRNA Interval_160667 chr8 111483050 111484322 + 0 NA intron (ENSMUSG00000031959.15, intron 13 of 26) protein_coding-intron (ENSMUSG00000031959.15, intron 13 of 26) 7067 ENSMUSG00000031959.15 ENSMUSG00000031959 ENSMUST00000212327 Wdr59 protein_coding Interval_141916 chr6 135332201 135333686 + 0 NA intron (ENSMUSG00000108276.1, intron 3 of 3) antisense-intron (ENSMUSG00000108276.1, intron 3 of 3) -13382 ENSMUSG00000107768.1 ENSMUSG00000107768 ENSMUST00000203442 Gm44275 lincRNA Interval_94117 chr2 84439512 84439718 + 0 NA TTS (ENSMUSG00000027082.15) protein_coding-TTS (ENSMUSG00000027082.15) -14349 ENSMUSG00000059588.13 ENSMUSG00000059588 ENSMUST00000151295 Calcrl protein_coding Interval_107684 chr3 110682776 110683405 + 0 NA Intergenic Intergenic 48767 ENSMUSG00000106650.1 ENSMUSG00000106650 ENSMUST00000200424 Gm43404 TEC Interval_84266 chr19 9105962 9107610 + 0 NA Intergenic Intergenic -18828 ENSMUSG00000024653.2 ENSMUSG00000024653 ENSMUST00000025554 Scgb1a1 protein_coding Interval_139081 chr6 94889527 94890147 + 0 NA Intergenic Intergenic -41004 ENSMUSG00000107940.1 ENSMUSG00000107940 ENSMUST00000204329 Gm44100 processed_pseudogene Interval_133503 chr6 5966704 5966912 + 0 NA exon (ENSMUSG00000029757.16, exon 11 of 16) protein_coding-exon (ENSMUSG00000029757.16, exon 11 of 16) 10585 ENSMUSG00000085416.1 ENSMUSG00000085416 ENSMUST00000130004 1700019G24Rik antisense Interval_113586 chr4 56864557 56866018 + 0 NA promoter-TSS (ENSMUSG00000038816.14) protein_coding-promoter-TSS (ENSMUSG00000038816.14) -26703 ENSMUSG00000038816.14 ENSMUSG00000038816 ENSMUST00000132764 Ctnnal1 protein_coding Interval_53348 chr14 56512029 56512614 + 0 NA exon (ENSMUSG00000000365.9, exon 32 of 37) protein_coding-exon (ENSMUSG00000000365.9, exon 32 of 37) 3038 ENSMUSG00000000365.9 ENSMUSG00000000365 ENSMUST00000225737 Rnf17 protein_coding Interval_37846 chr12 72463301 72464691 + 0 NA intron (ENSMUSG00000021090.16, intron 12 of 32) protein_coding-intron (ENSMUSG00000021090.16, intron 12 of 24) 11971 ENSMUSG00000106138.1 ENSMUSG00000106138 ENSMUST00000196758 Gm44392 miRNA Interval_51183 chr14 24525407 24525737 + 0 NA Intergenic Intergenic 34854 ENSMUSG00000025290.17 ENSMUSG00000025290 ENSMUST00000224699 Rps24 protein_coding Interval_5167 chr1 86187810 86189556 + 0 NA intron (ENSMUSG00000062590.13, intron 10 of 18) protein_coding-intron (ENSMUSG00000062590.13, intron 10 of 24) 33884 ENSMUSG00000062590.13 ENSMUSG00000062590 ENSMUST00000126579 Armc9 protein_coding Interval_150740 chr7 114036276 114036813 + 0 NA intron (ENSMUSG00000038156.16, intron 14 of 15) protein_coding-intron (ENSMUSG00000038156.16, intron 14 of 15) -50354 ENSMUSG00000110248.1 ENSMUSG00000110248 ENSMUST00000210417 Gm45615 antisense Interval_95695 chr2 114296548 114296870 + 0 NA Intergenic Intergenic -23274 ENSMUSG00000101266.1 ENSMUSG00000101266 ENSMUST00000187452 Gm29234 lincRNA Interval_16382 chr10 62650582 62651959 + 0 NA promoter-TSS (ENSMUSG00000020076.7) protein_coding-promoter-TSS (ENSMUSG00000020076.7) -3489 ENSMUSG00000020076.7 ENSMUSG00000020076 ENSMUST00000218224 Ddx50 protein_coding Interval_107245 chr3 104910151 104910392 + 0 NA intron (ENSMUSG00000045576.16, intron 11 of 13) protein_coding-intron (ENSMUSG00000045576.16, intron 11 of 13) 5892 ENSMUSG00000106105.1 ENSMUSG00000106105 ENSMUST00000198831 Gm4525 processed_pseudogene Interval_168363 chr9 79622046 79622697 + 0 NA intron (ENSMUSG00000032332.17, intron 51 of 64) protein_coding-intron (ENSMUSG00000032332.17, intron 51 of 65) 48563 ENSMUSG00000111207.1 ENSMUSG00000111207 ENSMUST00000216602 Gm8125 processed_pseudogene Interval_133359 chr6 3664439 3664851 + 0 NA Intergenic Intergenic 56740 ENSMUSG00000076357.2 ENSMUSG00000076357 ENSMUST00000102402 Mir653 miRNA Interval_91243 chr2 36299345 36300531 + 0 NA Intergenic Intergenic -1603 ENSMUSG00000113163.1 ENSMUSG00000113163 ENSMUST00000223545 Olfr335-ps polymorphic_pseudogene Interval_115416 chr4 98778347 98779245 + 0 NA exon (ENSMUSG00000035407.8, exon 3 of 10) protein_coding-exon (ENSMUSG00000035407.8, exon 3 of 10) -7321 ENSMUSG00000035407.8 ENSMUSG00000035407 ENSMUST00000137270 Kank4 protein_coding Interval_172146 chrX 8001687 8003312 + 0 NA Intergenic Intergenic 15993 ENSMUSG00000031163.2 ENSMUSG00000031163 ENSMUST00000033503 Glod5 protein_coding Interval_19172 chr10 95281919 95282654 + 0 NA intron (ENSMUSG00000045867.10, intron 2 of 2) protein_coding-intron (ENSMUSG00000045867.10, intron 2 of 2) 32567 ENSMUSG00000112744.1 ENSMUSG00000112744 ENSMUST00000219461 Gm48880 TEC Interval_113021 chr4 46947288 46947475 + 0 NA intron (ENSMUSG00000039809.10, intron 1 of 18) protein_coding-intron (ENSMUSG00000039809.10, intron 1 of 18) 63400 ENSMUSG00000048824.7 ENSMUSG00000048824 ENSMUST00000135777 Gm568 lincRNA Interval_7999 chr1 135146398 135147951 + 0 NA promoter-TSS (ENSMUSG00000026426.10) protein_coding-promoter-TSS (ENSMUSG00000026426.10) 3592 ENSMUSG00000087721.1 ENSMUSG00000087721 ENSMUST00000157096 Gm26280 rRNA Interval_161920 chr8 123768775 123769396 + 0 NA TTS (ENSMUSG00000110456.1) TEC-TTS (ENSMUSG00000110456.1) 1534 ENSMUSG00000110456.1 ENSMUSG00000110456 ENSMUST00000211815 Gm45865 TEC Interval_31319 chr11 99791052 99791652 + 0 NA Intergenic Intergenic 2115 ENSMUSG00000078261.1 ENSMUSG00000078261 ENSMUST00000105058 Gm11596 protein_coding Interval_149226 chr7 96427125 96427410 + 0 NA intron (ENSMUSG00000048078.16, intron 2 of 2) protein_coding-intron (ENSMUSG00000048078.16, intron 2 of 32) 8750 ENSMUSG00000082780.2 ENSMUSG00000082780 ENSMUST00000117302 Rps11-ps5 processed_pseudogene Interval_116022 chr4 107052331 107053103 + 0 NA Intergenic Intergenic 7233 ENSMUSG00000028622.11 ENSMUSG00000028622 ENSMUST00000138788 Mrpl37 protein_coding Interval_134417 chr6 28499456 28500443 + 0 NA intron (ENSMUSG00000001424.14, intron 1 of 16) protein_coding-intron (ENSMUSG00000001424.14, intron 1 of 23) 19520 ENSMUSG00000001424.14 ENSMUSG00000001424 ENSMUST00000165151 Snd1 protein_coding Interval_37471 chr12 69190294 69191553 + 0 NA intron (ENSMUSG00000113786.1, intron 3 of 3) protein_coding-intron (ENSMUSG00000020973.7, intron 2 of 2) 6181 ENSMUSG00000113149.1 ENSMUSG00000113149 ENSMUST00000223192 Gm49383 protein_coding Interval_131283 chr5 136160753 136161055 + 0 NA intron (ENSMUSG00000039747.11, intron 3 of 3) protein_coding-intron (ENSMUSG00000039747.11, intron 2 of 2) 9729 ENSMUSG00000039747.11 ENSMUSG00000039747 ENSMUST00000198268 Orai2 protein_coding Interval_20799 chr10 121033205 121034519 + 0 NA promoter-TSS (ENSMUSG00000020218.11) protein_coding-promoter-TSS (ENSMUSG00000020218.11) -162 ENSMUSG00000020218.11 ENSMUSG00000020218 ENSMUST00000145691 Wif1 protein_coding Interval_4174 chr1 71241255 71241980 + 0 NA TTS (ENSMUSG00000050296.14) protein_coding-TTS (ENSMUSG00000050296.14) -85597 ENSMUSG00000101551.1 ENSMUSG00000101551 ENSMUST00000188170 Gm8870 processed_pseudogene Interval_19 GL456211.1 100272 100740 + 0 NA NA NA NA NA Interval_134227 chr6 23247541 23250377 + 0 NA promoter-TSS (ENSMUSG00000029697.6) protein_coding-promoter-TSS (ENSMUSG00000029697.6) -597 ENSMUSG00000029697.6 ENSMUSG00000029697 ENSMUST00000031709 Fezf1 protein_coding Interval_59915 chr15 61881351 61881582 + 0 NA Intergenic Intergenic 55219 ENSMUSG00000116017.1 ENSMUSG00000116017 ENSMUST00000229370 Gm18154 processed_pseudogene Interval_153480 chr7 145114019 145114942 + 0 NA Intergenic Intergenic -48516 ENSMUSG00000108967.1 ENSMUSG00000108967 ENSMUST00000207878 Gm45181 lincRNA Interval_92320 chr2 58722320 58722827 + 0 NA intron (ENSMUSG00000086129.1, intron 2 of 2) protein_coding-intron (ENSMUSG00000026839.17, intron 1 of 7) 16804 ENSMUSG00000086129.1 ENSMUSG00000086129 ENSMUST00000140464 Gm13558 sense_intronic Interval_8477 chr1 139800848 139801110 + 0 NA Intergenic Intergenic 13996 ENSMUSG00000095393.1 ENSMUSG00000095393 ENSMUST00000122621 Gm25619 snRNA Interval_62872 chr15 97612455 97612733 + 0 NA Intergenic Intergenic -54304 ENSMUSG00000116131.1 ENSMUSG00000116131 ENSMUST00000230522 Gm49506 processed_pseudogene Interval_8041 chr1 135381208 135382195 + 0 NA TTS (ENSMUSG00000041879.13) protein_coding-TTS (ENSMUSG00000041879.13) 6999 ENSMUSG00000041879.13 ENSMUSG00000041879 ENSMUST00000159173 Ipo9 protein_coding Interval_17578 chr10 77901946 77903590 + 0 NA promoter-TSS (ENSMUSG00000051652.4) protein_coding-promoter-TSS (ENSMUSG00000051652.4) -232 ENSMUSG00000051652.4 ENSMUSG00000051652 ENSMUST00000057608 Lrrc3 protein_coding Interval_159369 chr8 94113347 94113738 + 0 NA Intergenic Intergenic -23655 ENSMUSG00000031757.7 ENSMUSG00000031757 ENSMUST00000034207 Mt4 protein_coding Interval_61768 chr15 83978260 83979504 + 0 NA intron (ENSMUSG00000022441.17, intron 8 of 31) protein_coding-intron (ENSMUSG00000022441.17, intron 2 of 3) -32283 ENSMUSG00000022441.17 ENSMUSG00000022441 ENSMUST00000122836 Efcab6 protein_coding Interval_6698 chr1 118858894 118859587 + 0 NA intron (ENSMUSG00000048402.14, intron 2 of 5) protein_coding-intron (ENSMUSG00000048402.14, intron 5 of 13) 49104 ENSMUSG00000100040.1 ENSMUSG00000100040 ENSMUST00000190981 Gm28467 processed_pseudogene Interval_101918 chr3 11328716 11329437 + 0 NA Intergenic Intergenic 174739 ENSMUSG00000095289.1 ENSMUSG00000095289 ENSMUST00000175281 Gm22547 miRNA Interval_57928 chr15 25525148 25525699 + 0 NA Intergenic Intergenic 67668 ENSMUSG00000115204.1 ENSMUSG00000115204 ENSMUST00000228618 Gm36642 lincRNA Interval_124829 chr5 55887690 55887895 + 0 NA Intergenic Intergenic -94905 ENSMUSG00000105678.1 ENSMUSG00000105678 ENSMUST00000195958 Gm43705 TEC Interval_157852 chr8 74973999 74974249 + 0 NA Intergenic Intergenic -25745 ENSMUSG00000034518.14 ENSMUSG00000034518 ENSMUST00000129391 Hmgxb4 protein_coding Interval_138829 chr6 92256863 92257397 + 0 NA Intergenic Intergenic -12480 ENSMUSG00000005892.4 ENSMUSG00000005892 ENSMUST00000006046 Trh protein_coding Interval_129734 chr5 122030692 122031784 + 0 NA intron (ENSMUSG00000042589.18, intron 1 of 6) protein_coding-intron (ENSMUSG00000042589.18, intron 2 of 22) 5908 ENSMUSG00000105795.1 ENSMUSG00000105795 ENSMUST00000198001 Gm3970 antisense Interval_123055 chr5 29293324 29293823 + 0 NA intron (ENSMUSG00000010721.15, intron 2 of 8) protein_coding-intron (ENSMUSG00000010721.15, intron 5 of 16) -13276 ENSMUSG00000105741.1 ENSMUSG00000105741 ENSMUST00000199610 C79130 TEC Interval_100600 chr2 170374390 170375244 + 0 NA intron (ENSMUSG00000086999.1, intron 4 of 7) protein_coding-intron (ENSMUSG00000013523.13, intron 8 of 12) 18456 ENSMUSG00000086999.1 ENSMUSG00000086999 ENSMUST00000131931 Bcas1os2 antisense Interval_121007 chr4 152177551 152179075 + 0 NA exon (ENSMUSG00000028937.14, exon 1 of 9) protein_coding-exon (ENSMUSG00000028937.14, exon 1 of 9) -7821 ENSMUSG00000028937.14 ENSMUSG00000028937 ENSMUST00000144733 Acot7 protein_coding Interval_106170 chr3 94306897 94307275 + 0 NA Intergenic Intergenic -3050 ENSMUSG00000028145.9 ENSMUSG00000028145 ENSMUST00000198494 Them4 protein_coding Interval_140855 chr6 122365802 122367483 + 0 NA Intergenic Intergenic -24737 ENSMUSG00000040657.3 ENSMUSG00000040657 ENSMUST00000043553 1700063H04Rik lincRNA Interval_130039 chr5 123845431 123845845 + 0 NA Intergenic Intergenic 19861 ENSMUSG00000045502.6 ENSMUSG00000045502 ENSMUST00000057145 Hcar2 protein_coding Interval_124657 chr5 52887078 52887534 + 0 NA Intergenic Intergenic 31903 ENSMUSG00000105054.1 ENSMUSG00000105054 ENSMUST00000196038 Gm43664 processed_pseudogene Interval_92527 chr2 60316903 60317641 + 0 NA intron (ENSMUSG00000026980.15, intron 26 of 34) protein_coding-intron (ENSMUSG00000026980.15, intron 26 of 34) -20916 ENSMUSG00000086196.7 ENSMUSG00000086196 ENSMUST00000124654 Gm13571 antisense Interval_158519 chr8 84203342 84204478 + 0 NA TTS (ENSMUSG00000103593.1) TEC-TTS (ENSMUSG00000103593.1) 3041 ENSMUSG00000103593.1 ENSMUSG00000103593 ENSMUST00000193908 Gm37352 TEC Interval_22039 chr11 5931700 5932569 + 0 NA intron (ENSMUSG00000041798.15, intron 1 of 9) protein_coding-intron (ENSMUSG00000041798.15, intron 1 of 9) 16819 ENSMUSG00000084819.1 ENSMUSG00000084819 ENSMUST00000135132 Gm11967 antisense Interval_37362 chr12 65485655 65486100 + 0 NA Intergenic Intergenic -44375 ENSMUSG00000088441.1 ENSMUSG00000088441 ENSMUST00000157816 Gm25599 snRNA Interval_76140 chr17 75464488 75465811 + 0 NA promoter-TSS (ENSMUSG00000071042.12) protein_coding-promoter-TSS (ENSMUSG00000071042.12) 29253 ENSMUSG00000071042.12 ENSMUSG00000071042 ENSMUST00000234011 Rasgrp3 protein_coding Interval_90225 chr2 29122550 29122792 + 0 NA Intergenic Intergenic -3215 ENSMUSG00000043535.13 ENSMUSG00000043535 ENSMUST00000145422 Setx protein_coding Interval_65325 chr16 21538793 21539136 + 0 NA intron (ENSMUSG00000033653.18, intron 34 of 46) protein_coding-intron (ENSMUSG00000033653.18, intron 33 of 43) 5852 ENSMUSG00000033653.18 ENSMUSG00000033653 ENSMUST00000127903 Vps8 protein_coding Interval_168409 chr9 80101670 80101893 + 0 NA intron (ENSMUSG00000034252.14, intron 4 of 6) protein_coding-intron (ENSMUSG00000034252.14, intron 5 of 22) 20156 ENSMUSG00000084917.3 ENSMUSG00000084917 ENSMUST00000165458 Gm17477 antisense Interval_17646 chr10 78450751 78451819 + 0 NA intron (ENSMUSG00000032788.15, intron 3 of 10) protein_coding-intron (ENSMUSG00000032788.15, intron 3 of 10) -3039 ENSMUSG00000032788.15 ENSMUSG00000032788 ENSMUST00000218245 Pdxk protein_coding Interval_98653 chr2 153860584 153861724 + 0 NA TTS (ENSMUSG00000027480.12) protein_coding-TTS (ENSMUSG00000027480.12) 9930 ENSMUSG00000027480.12 ENSMUSG00000027480 ENSMUST00000129011 Sun5 protein_coding Interval_119482 chr4 137861641 137862840 + 0 NA promoter-TSS (ENSMUSG00000057530.14) protein_coding-promoter-TSS (ENSMUSG00000057530.14) 21697 ENSMUSG00000085823.7 ENSMUSG00000085823 ENSMUST00000156022 Gm13012 antisense Interval_130441 chr5 127648163 127650217 + 0 NA intron (ENSMUSG00000049971.17, intron 2 of 10) protein_coding-intron (ENSMUSG00000049971.17, intron 2 of 11) 16928 ENSMUSG00000049971.17 ENSMUSG00000049971 ENSMUST00000134529 Glt1d1 protein_coding Interval_102535 chr3 27580708 27581572 + 0 NA intron (ENSMUSG00000039286.12, intron 4 of 26) protein_coding-intron (ENSMUSG00000039286.12, intron 3 of 25) 3855 ENSMUSG00000092695.1 ENSMUSG00000092695 ENSMUST00000174954 Mir3092 miRNA Interval_130243 chr5 125162320 125162863 + 0 NA intron (ENSMUSG00000029478.16, intron 1 of 47) protein_coding-intron (ENSMUSG00000029478.16, intron 1 of 46) 75750 ENSMUSG00000106663.1 ENSMUSG00000106663 ENSMUST00000198978 Gm42839 antisense Interval_144609 chr7 27075894 27076118 + 0 NA Intergenic Intergenic 8550 ENSMUSG00000108682.1 ENSMUSG00000108682 ENSMUST00000206269 Gm29754 processed_pseudogene Interval_50088 chr14 7906916 7907582 + 0 NA exon (ENSMUSG00000025278.9, exon 22 of 46) protein_coding-exon (ENSMUSG00000025278.9, exon 22 of 46) 22508 ENSMUSG00000025278.9 ENSMUSG00000025278 ENSMUST00000228206 Flnb protein_coding Interval_101999 chr3 14648125 14649645 + 0 NA intron (ENSMUSG00000027555.8, intron 2 of 6) protein_coding-intron (ENSMUSG00000027555.8, intron 2 of 6) 7158 ENSMUSG00000027555.8 ENSMUSG00000027555 ENSMUST00000029071 Car13 protein_coding Interval_24490 chr11 33679897 33680828 + 0 NA intron (ENSMUSG00000053519.17, intron 1 of 8) protein_coding-intron (ENSMUSG00000053519.17, intron 1 of 7) -15532 ENSMUSG00000085240.1 ENSMUSG00000085240 ENSMUST00000136083 Gm12119 antisense Interval_31487 chr11 100969006 100971088 + 0 NA exon (ENSMUSG00000004044.9, exon 1 of 2) protein_coding-exon (ENSMUSG00000004044.9, exon 1 of 2) 504 ENSMUSG00000004044.9 ENSMUSG00000004044 ENSMUST00000132934 Cavin1 protein_coding Interval_51750 chr14 31941913 31943181 + 0 NA Intergenic Intergenic 36019 ENSMUSG00000046005.4 ENSMUSG00000046005 ENSMUST00000143315 D830044D21Rik lincRNA Interval_106112 chr3 93291462 93292066 + 0 NA promoter-TSS (ENSMUSG00000102439.4) protein_coding-promoter-TSS (ENSMUSG00000102439.4) -13251 ENSMUSG00000102485.1 ENSMUSG00000102485 ENSMUST00000195596 Gm37922 processed_pseudogene Interval_136959 chr6 65084470 65086390 + 0 NA intron (ENSMUSG00000029920.9, intron 8 of 21) protein_coding-intron (ENSMUSG00000029920.9, intron 10 of 23) 37497 ENSMUSG00000029919.5 ENSMUSG00000029919 ENSMUST00000170252 Hpgds protein_coding Interval_174495 chrX 153497677 153500267 + 0 NA exon (ENSMUSG00000050148.9, exon 1 of 1) protein_coding-exon (ENSMUSG00000050148.9, exon 1 of 1) 745 ENSMUSG00000050148.9 ENSMUSG00000050148 ENSMUST00000060714 Ubqln2 protein_coding Interval_46962 chr13 73765471 73765769 + 0 NA intron (ENSMUSG00000017756.9, intron 1 of 6) protein_coding-intron (ENSMUSG00000017756.9, intron 1 of 23) -38989 ENSMUSG00000017756.9 ENSMUSG00000017756 ENSMUST00000221813 Slc12a7 protein_coding Interval_82495 chr18 74571465 74572601 + 0 NA intron (ENSMUSG00000025885.18, intron 2 of 4) protein_coding-intron (ENSMUSG00000025885.18, intron 2 of 38) -40909 ENSMUSG00000086333.1 ENSMUSG00000086333 ENSMUST00000137034 1700120E14Rik antisense Interval_159627 chr8 95852278 95854008 + 0 NA intron (ENSMUSG00000036534.6, intron 1 of 11) protein_coding-intron (ENSMUSG00000036534.6, intron 1 of 11) 379 ENSMUSG00000036534.6 ENSMUSG00000036534 ENSMUST00000153835 Slc38a7 protein_coding Interval_42647 chr13 17694444 17695939 + 0 NA promoter-TSS (ENSMUSG00000012429.9) protein_coding-promoter-TSS (ENSMUSG00000012429.9) -242 ENSMUSG00000012429.9 ENSMUSG00000012429 ENSMUST00000222292 Mplkip protein_coding Interval_172907 chrX 53074006 53074248 + 0 NA intron (ENSMUSG00000061082.11, intron 2 of 2) protein_coding-intron (ENSMUSG00000061082.11, intron 2 of 2) -16937 ENSMUSG00000087365.7 ENSMUSG00000087365 ENSMUST00000151099 C430049B03Rik processed_transcript Interval_4527 chr1 74800545 74800920 + 0 NA exon (ENSMUSG00000026167.14, exon 3 of 4) protein_coding-exon (ENSMUSG00000026167.14, exon 3 of 4) 7369 ENSMUSG00000026167.14 ENSMUSG00000026167 ENSMUST00000187238 Wnt10a protein_coding Interval_83198 chr18 82719992 82720434 + 0 NA promoter-TSS (ENSMUSG00000092638.1) miRNA-promoter-TSS (ENSMUSG00000092638.1) -68 ENSMUSG00000092638.1 ENSMUSG00000092638 ENSMUST00000174897 Mir5112 miRNA Interval_68758 chr16 85644921 85645287 + 0 NA TTS (ENSMUSG00000116972.1) processed_pseudogene-TTS (ENSMUSG00000116972.1) 852 ENSMUSG00000116972.1 ENSMUSG00000116972 ENSMUST00000231765 Gm6278 processed_pseudogene Interval_53040 chr14 53755435 53757870 + 0 NA promoter-TSS (ENSMUSG00000094562.5) TR_V_gene-promoter-TSS (ENSMUSG00000094562.5) -999 ENSMUSG00000094562.5 ENSMUSG00000094562 ENSMUST00000184905 Trav13-4-dv7 TR_V_gene Interval_12766 chr10 5152711 5152977 + 0 NA intron (ENSMUSG00000096054.3, intron 13 of 24) protein_coding-intron (ENSMUSG00000096054.3, intron 103 of 145) 32682 ENSMUSG00000096054.3 ENSMUSG00000096054 ENSMUST00000214945 Syne1 protein_coding Interval_8101 chr1 135731570 135732232 + 0 NA intron (ENSMUSG00000026421.14, intron 1 of 5) protein_coding-intron (ENSMUSG00000026421.14, intron 1 of 5) 11840 ENSMUSG00000026421.14 ENSMUSG00000026421 ENSMUST00000027677 Csrp1 protein_coding Interval_42696 chr13 18056741 18057480 + 0 NA Intergenic Intergenic 18549 ENSMUSG00000113496.1 ENSMUSG00000113496 ENSMUST00000222946 Gm6575 processed_pseudogene Interval_133233 chr5 150737981 150738365 + 0 NA intron (ENSMUSG00000034021.15, intron 8 of 34) protein_coding-intron (ENSMUSG00000034021.15, intron 8 of 34) -13920 ENSMUSG00000107048.1 ENSMUSG00000107048 ENSMUST00000200678 Gm43807 sense_intronic Interval_88907 chr2 12484042 12484393 + 0 NA Intergenic Intergenic -62191 ENSMUSG00000083547.2 ENSMUSG00000083547 ENSMUST00000117101 Gm13321 processed_pseudogene Interval_128285 chr5 112283758 112284936 + 0 NA intron (ENSMUSG00000029344.15, intron 1 of 5) protein_coding-intron (ENSMUSG00000029344.15, intron 1 of 6) 7640 ENSMUSG00000029344.15 ENSMUSG00000029344 ENSMUST00000139482 Tpst2 protein_coding Interval_11205 chr1 180157648 180158074 + 0 NA intron (ENSMUSG00000026490.18, intron 18 of 20) protein_coding-intron (ENSMUSG00000026490.18, intron 32 of 34) -9710 ENSMUSG00000103636.1 ENSMUSG00000103636 ENSMUST00000195719 Gm38331 TEC Interval_112633 chr4 43713428 43713800 + 0 NA Intergenic Intergenic -3383 ENSMUSG00000046450.3 ENSMUSG00000046450 ENSMUST00000055401 Olfr71 protein_coding Interval_85836 chr19 32254856 32255921 + 0 NA intron (ENSMUSG00000040451.18, intron 2 of 4) protein_coding-intron (ENSMUSG00000040451.18, intron 3 of 9) 21576 ENSMUSG00000040451.18 ENSMUSG00000040451 ENSMUST00000141252 Sgms1 protein_coding Interval_163189 chr9 17585627 17586522 + 0 NA Intergenic Intergenic 62095 ENSMUSG00000111534.1 ENSMUSG00000111534 ENSMUST00000214184 Gm48846 processed_pseudogene Interval_45453 chr13 55243072 55243469 + 0 NA intron (ENSMUSG00000021488.8, intron 4 of 22) protein_coding-intron (ENSMUSG00000021488.8, intron 4 of 22) 11131 ENSMUSG00000114359.1 ENSMUSG00000114359 ENSMUST00000224833 Gm47816 processed_pseudogene Interval_103520 chr3 46511216 46512168 + 0 NA Intergenic Intergenic -63772 ENSMUSG00000090919.6 ENSMUSG00000090919 ENSMUST00000195537 Pabpc4l protein_coding Interval_61849 chr15 84653478 84655016 + 0 NA Intergenic Intergenic -15373 ENSMUSG00000036106.15 ENSMUSG00000036106 ENSMUST00000065499 Prr5 protein_coding Interval_138826 chr6 92244425 92245126 + 0 NA promoter-TSS (ENSMUSG00000005892.4) protein_coding-promoter-TSS (ENSMUSG00000005892.4) -125 ENSMUSG00000005892.4 ENSMUSG00000005892 ENSMUST00000006046 Trh protein_coding Interval_31211 chr11 98925829 98926824 + 0 NA Intergenic Intergenic 5860 ENSMUSG00000017499.15 ENSMUSG00000017499 ENSMUST00000135862 Cdc6 protein_coding Interval_169648 chr9 99691291 99691603 + 0 NA TTS (ENSMUSG00000032473.13) protein_coding-TTS (ENSMUSG00000032473.13) -16952 ENSMUSG00000089655.1 ENSMUSG00000089655 ENSMUST00000161981 Gm16004 antisense Interval_169617 chr9 99473212 99473701 + 0 NA intron (ENSMUSG00000046242.8, intron 11 of 11) protein_coding-intron (ENSMUSG00000046242.8, intron 1 of 1) 21981 ENSMUSG00000046242.8 ENSMUSG00000046242 ENSMUST00000056103 Nme9 protein_coding Interval_55093 chr14 77941269 77941903 + 0 NA intron (ENSMUSG00000022014.15, intron 6 of 6) protein_coding-intron (ENSMUSG00000022014.15, intron 6 of 11) 37179 ENSMUSG00000022014.15 ENSMUSG00000022014 ENSMUST00000227903 Epsti1 protein_coding Interval_45419 chr13 55057662 55058517 + 0 NA intron (ENSMUSG00000025878.16, intron 7 of 13) protein_coding-intron (ENSMUSG00000025878.16, intron 8 of 14) -27688 ENSMUSG00000094446.1 ENSMUSG00000094446 ENSMUST00000075962 Gm6344 processed_pseudogene Interval_6834 chr1 119959710 119960346 + 0 NA intron (ENSMUSG00000036962.12, intron 7 of 23) protein_coding-intron (ENSMUSG00000036962.12, intron 6 of 22) -26767 ENSMUSG00000092245.1 ENSMUSG00000092245 ENSMUST00000174509 Gm17973 processed_pseudogene Interval_143302 chr7 5029563 5032196 + 0 NA exon (ENSMUSG00000074405.8, exon 2 of 3) protein_coding-exon (ENSMUSG00000074405.8, exon 2 of 3) -3239 ENSMUSG00000116184.1 ENSMUSG00000116184 ENSMUST00000076791 4632433K11Rik protein_coding Interval_63540 chr15 101912235 101912526 + 0 NA Intergenic Intergenic -2231 ENSMUSG00000116194.1 ENSMUSG00000116194 ENSMUST00000230923 Gm49434 unprocessed_pseudogene Interval_130539 chr5 128664087 128665280 + 0 NA Intergenic Intergenic -37841 ENSMUSG00000029423.10 ENSMUSG00000029423 ENSMUST00000195959 Piwil1 protein_coding Interval_91015 chr2 34348340 34348542 + 0 NA intron (ENSMUSG00000038718.15, intron 1 of 5) protein_coding-intron (ENSMUSG00000038718.15, intron 2 of 8) -58431 ENSMUSG00000038696.14 ENSMUSG00000038696 ENSMUST00000129633 Mapkap1 protein_coding Interval_95557 chr2 112255371 112255646 + 0 NA intron (ENSMUSG00000041358.1, intron 2 of 6) protein_coding-intron (ENSMUSG00000041358.1, intron 2 of 6) 3783 ENSMUSG00000041358.1 ENSMUSG00000041358 ENSMUST00000043970 Nutm1 protein_coding Interval_29354 chr11 83409222 83410458 + 0 NA promoter-TSS (ENSMUSG00000020684.14) protein_coding-promoter-TSS (ENSMUSG00000020684.14) 152 ENSMUSG00000020684.14 ENSMUSG00000020684 ENSMUST00000164425 Rasl10b protein_coding Interval_120083 chr4 141708064 141708562 + 0 NA exon (ENSMUSG00000078515.4, exon 3 of 10) protein_coding-exon (ENSMUSG00000078515.4, exon 3 of 10) 15106 ENSMUSG00000078515.4 ENSMUSG00000078515 ENSMUST00000177592 Ddi2 protein_coding Interval_107487 chr3 108054600 108055446 + 0 NA Intergenic Intergenic -10164 ENSMUSG00000027890.17 ENSMUSG00000027890 ENSMUST00000106670 Gstm4 protein_coding Interval_110416 chr3 157916277 157917136 + 0 NA intron (ENSMUSG00000028179.12, intron 4 of 11) protein_coding-intron (ENSMUSG00000028179.12, intron 4 of 11) -8514 ENSMUSG00000028177.13 ENSMUSG00000028177 ENSMUST00000196971 1810013D15Rik antisense Interval_60959 chr15 78203963 78205460 + 0 NA promoter-TSS (ENSMUSG00000005716.16) protein_coding-promoter-TSS (ENSMUSG00000005716.16) 1689 ENSMUSG00000005716.16 ENSMUSG00000005716 ENSMUST00000120592 Pvalb protein_coding Interval_79466 chr18 32113995 32114837 + 0 NA intron (ENSMUSG00000117650.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000117650.1, intron 1 of 1) -2109 ENSMUSG00000117481.1 ENSMUSG00000117481 ENSMUST00000235012 Gm49966 processed_pseudogene Interval_38625 chr12 80634437 80634737 + 0 NA TTS (ENSMUSG00000021131.14) protein_coding-TTS (ENSMUSG00000021131.14) -1405 ENSMUSG00000112288.1 ENSMUSG00000112288 ENSMUST00000220154 Gm47879 antisense Interval_122872 chr5 26593672 26594388 + 0 NA Intergenic Intergenic -5408 ENSMUSG00000105491.1 ENSMUSG00000105491 ENSMUST00000200355 Gm42844 processed_pseudogene Interval_139245 chr6 97517308 97518265 + 0 NA intron (ENSMUSG00000030064.16, intron 2 of 7) protein_coding-intron (ENSMUSG00000030064.16, intron 2 of 23) 29781 ENSMUSG00000064724.1 ENSMUSG00000064724 ENSMUST00000082790 Gm25852 snoRNA Interval_119836 chr4 140366070 140366941 + 0 NA Intergenic Intergenic -14125 ENSMUSG00000087084.1 ENSMUSG00000087084 ENSMUST00000126252 Gm13016 lincRNA Interval_89797 chr2 25500118 25502450 + 0 NA promoter-TSS (ENSMUSG00000015083.11) protein_coding-promoter-TSS (ENSMUSG00000015083.11) -1041 ENSMUSG00000015083.11 ENSMUSG00000015083 ENSMUST00000133255 C8g protein_coding Interval_127312 chr5 102562445 102563167 + 0 NA intron (ENSMUSG00000057315.14, intron 2 of 2) protein_coding-intron (ENSMUSG00000057315.14, intron 1 of 8) -82810 ENSMUSG00000106586.1 ENSMUSG00000106586 ENSMUST00000200080 1700013M08Rik antisense Interval_39924 chr12 99818085 99818546 + 0 NA intron (ENSMUSG00000021176.6, intron 6 of 6) protein_coding-intron (ENSMUSG00000021176.6, intron 5 of 5) -3363 ENSMUSG00000113147.1 ENSMUSG00000113147 ENSMUST00000223298 Gm47207 antisense Interval_58768 chr15 37970228 37970439 + 0 NA exon (ENSMUSG00000037487.7, exon 58 of 59) protein_coding-exon (ENSMUSG00000037487.7, exon 58 of 59) 282 ENSMUSG00000037487.7 ENSMUSG00000037487 ENSMUST00000227143 Ubr5 protein_coding Interval_170499 chr9 108321891 108322644 + 0 NA intron (ENSMUSG00000007815.13, intron 2 of 5) protein_coding-intron (ENSMUSG00000007815.13, intron 2 of 5) -8979 ENSMUSG00000102554.1 ENSMUSG00000102554 ENSMUST00000191755 Gm37568 processed_pseudogene Interval_1037 chr1 14278902 14279538 + 0 NA intron (ENSMUSG00000025932.14, intron 3 of 16) protein_coding-intron (ENSMUSG00000025932.14, intron 4 of 17) -23230 ENSMUSG00000102588.1 ENSMUSG00000102588 ENSMUST00000193605 Gm37444 TEC Interval_89585 chr2 23015089 23016757 + 0 NA intron (ENSMUSG00000058835.14, intron 1 of 10) protein_coding-intron (ENSMUSG00000058835.14, intron 1 of 9) 3744 ENSMUSG00000083650.1 ENSMUSG00000083650 ENSMUST00000120528 Gm13357 processed_pseudogene Interval_122194 chr5 19337304 19337587 + 0 NA intron (ENSMUSG00000040003.18, intron 1 of 2) protein_coding-intron (ENSMUSG00000040003.18, intron 1 of 22) -111277 ENSMUSG00000097626.5 ENSMUSG00000097626 ENSMUST00000197496 4921504A21Rik antisense Interval_161186 chr8 118313420 118313610 + 0 NA promoter-TSS (ENSMUSG00000031841.19) protein_coding-promoter-TSS (ENSMUSG00000031841.19) 68676 ENSMUSG00000110662.1 ENSMUSG00000110662 ENSMUST00000213075 Gm45722 processed_pseudogene Interval_69487 chr16 93829662 93830368 + 0 NA intron (ENSMUSG00000116927.1, intron 1 of 2) antisense-intron (ENSMUSG00000116927.1, intron 1 of 2) 3004 ENSMUSG00000116927.1 ENSMUSG00000116927 ENSMUST00000231503 Gm30881 antisense Interval_12420 chr1 193301364 193302603 + 0 NA promoter-TSS (ENSMUSG00000026639.18) protein_coding-promoter-TSS (ENSMUSG00000026639.18) -11094 ENSMUSG00000103736.1 ENSMUSG00000103736 ENSMUST00000193570 Gm37650 antisense Interval_60411 chr15 73580721 73581968 + 0 NA TTS (ENSMUSG00000079020.9) protein_coding-TTS (ENSMUSG00000079020.9) 7618 ENSMUSG00000079020.9 ENSMUSG00000079020 ENSMUST00000150409 Slc45a4 protein_coding Interval_44032 chr13 40206860 40207050 + 0 NA intron (ENSMUSG00000047094.9, intron 6 of 17) protein_coding-intron (ENSMUSG00000047094.9, intron 7 of 18) 81056 ENSMUSG00000047094.9 ENSMUSG00000047094 ENSMUST00000224813 Ofcc1 protein_coding Interval_88474 chr2 5425901 5426794 + 0 NA intron (ENSMUSG00000039145.16, intron 3 of 10) protein_coding-intron (ENSMUSG00000039145.16, intron 3 of 10) 142697 ENSMUSG00000080820.1 ENSMUSG00000080820 ENSMUST00000117204 Gm13197 processed_pseudogene Interval_163439 chr9 21438909 21439634 + 0 NA intron (ENSMUSG00000033335.17, intron 1 of 2) protein_coding-intron (ENSMUSG00000033335.17, intron 1 of 20) 14303 ENSMUSG00000033335.17 ENSMUSG00000033335 ENSMUST00000174243 Dnm2 protein_coding Interval_94943 chr2 102077429 102078029 + 0 NA intron (ENSMUSG00000048058.17, intron 2 of 5) protein_coding-intron (ENSMUSG00000048058.17, intron 2 of 5) 20142 ENSMUSG00000085110.1 ENSMUSG00000085110 ENSMUST00000146134 Gm13920 antisense Interval_134760 chr6 31273950 31274893 + 0 NA intron (ENSMUSG00000087380.7, intron 2 of 5) processed_transcript-intron (ENSMUSG00000087380.7, intron 1 of 6) -14542 ENSMUSG00000106867.1 ENSMUSG00000106867 ENSMUST00000201868 Gm43800 TEC Interval_37203 chr12 59637604 59637809 + 0 NA Intergenic Intergenic 8460 ENSMUSG00000112851.1 ENSMUSG00000112851 ENSMUST00000219830 Gm7727 processed_pseudogene Interval_62876 chr15 97657943 97658920 + 0 NA Intergenic Intergenic 21922 ENSMUSG00000022466.6 ENSMUSG00000022466 ENSMUST00000229008 Rpap3 protein_coding Interval_136901 chr6 63745513 63745765 + 0 NA intron (ENSMUSG00000071424.10, intron 2 of 8) protein_coding-intron (ENSMUSG00000071424.10, intron 2 of 15) 38428 ENSMUSG00000108068.1 ENSMUSG00000108068 ENSMUST00000204208 Gm44075 processed_pseudogene Interval_79007 chr18 23894878 23895533 + 0 NA Intergenic Intergenic -48692 ENSMUSG00000117504.1 ENSMUSG00000117504 ENSMUST00000235052 Gm46611 processed_pseudogene Interval_146579 chr7 47007679 47008957 + 0 NA promoter-TSS (ENSMUSG00000049516.9) protein_coding-promoter-TSS (ENSMUSG00000049516.9) -83 ENSMUSG00000049516.9 ENSMUSG00000049516 ENSMUST00000208588 Spty2d1 protein_coding Interval_91725 chr2 48873093 48873894 + 0 NA intron (ENSMUSG00000052155.5, intron 4 of 10) protein_coding-intron (ENSMUSG00000052155.5, intron 4 of 10) -16896 ENSMUSG00000052155.5 ENSMUSG00000052155 ENSMUST00000156681 Acvr2a protein_coding Interval_29857 chr11 87353492 87353999 + 0 NA intron (ENSMUSG00000046442.4, intron 1 of 3) protein_coding-intron (ENSMUSG00000046442.4, intron 1 of 6) 4892 ENSMUSG00000046442.4 ENSMUSG00000046442 ENSMUST00000155154 Ppm1e protein_coding Interval_135286 chr6 38058762 38059409 + 0 NA intron (ENSMUSG00000038600.12, intron 16 of 21) protein_coding-intron (ENSMUSG00000038600.12, intron 15 of 20) 24287 ENSMUSG00000038600.12 ENSMUSG00000038600 ENSMUST00000130816 Atp6v0a4 protein_coding Interval_71236 chr17 21482786 21483038 + 0 NA Intergenic Intergenic -6086 ENSMUSG00000057409.7 ENSMUSG00000057409 ENSMUST00000076664 Zfp53 protein_coding Interval_57855 chr15 23367217 23367699 + 0 NA intron (ENSMUSG00000040420.15, intron 4 of 10) protein_coding-intron (ENSMUSG00000040420.15, intron 5 of 9) 46999 ENSMUSG00000115560.1 ENSMUSG00000115560 ENSMUST00000226326 Gm49191 antisense Interval_72938 chr17 33666982 33667574 + 0 NA promoter-TSS (ENSMUSG00000059208.15) protein_coding-promoter-TSS (ENSMUSG00000059208.15) 18123 ENSMUSG00000059208.15 ENSMUSG00000059208 ENSMUST00000127598 Hnrnpm protein_coding Interval_109233 chr3 138138033 138138442 + 0 NA intron (ENSMUSG00000028158.14, intron 2 of 19) protein_coding-intron (ENSMUSG00000028158.14, intron 2 of 19) -5280 ENSMUSG00000004127.12 ENSMUSG00000004127 ENSMUST00000161141 Trmt10a protein_coding Interval_81208 chr18 56477110 56478153 + 0 NA intron (ENSMUSG00000001700.10, intron 3 of 8) protein_coding-intron (ENSMUSG00000001700.10, intron 4 of 13) 8364 ENSMUSG00000001700.10 ENSMUSG00000001700 ENSMUST00000237716 Gramd3 protein_coding Interval_128399 chr5 113118570 113119005 + 0 NA exon (ENSMUSG00000104576.1, exon 1 of 1) TEC-exon (ENSMUSG00000104576.1, exon 1 of 1) 677 ENSMUSG00000104576.1 ENSMUSG00000104576 ENSMUST00000197638 F830115B05Rik TEC Interval_107678 chr3 110249754 110251787 + 0 NA exon (ENSMUSG00000049300.11, exon 1 of 1) protein_coding-exon (ENSMUSG00000049300.11, exon 1 of 1) 223 ENSMUSG00000049300.11 ENSMUSG00000049300 ENSMUST00000106567 Prmt6 protein_coding Interval_69587 chr16 94449008 94449697 + 0 NA TTS (ENSMUSG00000040785.19) protein_coding-TTS (ENSMUSG00000040785.19) 20279 ENSMUSG00000075829.1 ENSMUSG00000075829 ENSMUST00000101881 Gm23692 snRNA Interval_76933 chr17 85028424 85028777 + 0 NA exon (ENSMUSG00000024131.8, exon 1 of 10) protein_coding-exon (ENSMUSG00000024131.8, exon 1 of 10) 224 ENSMUSG00000024131.8 ENSMUSG00000024131 ENSMUST00000024944 Slc3a1 protein_coding Interval_75492 chr17 67343245 67343492 + 0 NA intron (ENSMUSG00000033278.10, intron 1 of 19) protein_coding-intron (ENSMUSG00000033278.10, intron 1 of 32) -208239 ENSMUSG00000087829.1 ENSMUSG00000087829 ENSMUST00000157204 Gm22277 misc_RNA Interval_55259 chr14 79736977 79739375 + 0 NA promoter-TSS (ENSMUSG00000076453.1) miRNA-promoter-TSS (ENSMUSG00000076453.1) -255 ENSMUSG00000076453.1 ENSMUSG00000076453 ENSMUST00000103254 Mir759 miRNA Interval_157903 chr8 75383811 75384173 + 0 NA exon (ENSMUSG00000110543.1, exon 1 of 1) processed_pseudogene-exon (ENSMUSG00000110543.1, exon 1 of 1) 190 ENSMUSG00000110543.1 ENSMUSG00000110543 ENSMUST00000211897 Umpk-ps processed_pseudogene Interval_22009 chr11 5756330 5756637 + 0 NA intron (ENSMUSG00000049680.17, intron 1 of 6) protein_coding-intron (ENSMUSG00000049680.17, intron 1 of 4) -5667 ENSMUSG00000083844.8 ENSMUSG00000083844 ENSMUST00000135394 Ube2d-ps transcribed_unprocessed_pseudogene Interval_125574 chr5 72094957 72095412 + 0 NA intron (ENSMUSG00000029212.11, intron 6 of 7) protein_coding-intron (ENSMUSG00000029212.11, intron 5 of 8) 47979 ENSMUSG00000082705.1 ENSMUSG00000082705 ENSMUST00000118662 Gm15616 processed_pseudogene Interval_133336 chr6 3424481 3424939 + 0 NA Intergenic Intergenic -39704 ENSMUSG00000047735.14 ENSMUSG00000047735 ENSMUST00000201638 Samd9l protein_coding Interval_146117 chr7 44079461 44080075 + 0 NA promoter-TSS (ENSMUSG00000108498.1) unprocessed_pseudogene-promoter-TSS (ENSMUSG00000108498.1) -718 ENSMUSG00000108498.1 ENSMUSG00000108498 ENSMUST00000205292 Gm45026 unprocessed_pseudogene Interval_166741 chr9 62359970 62361599 + 0 NA intron (ENSMUSG00000032249.14, intron 1 of 4) protein_coding-intron (ENSMUSG00000032249.14, intron 1 of 6) 18320 ENSMUSG00000032249.14 ENSMUSG00000032249 ENSMUST00000145679 Anp32a protein_coding Interval_103194 chr3 36552019 36553090 + 0 NA promoter-TSS (ENSMUSG00000027714.11) protein_coding-promoter-TSS (ENSMUSG00000027714.11) -2999 ENSMUSG00000027714.11 ENSMUSG00000027714 ENSMUST00000131316 Exosc9 protein_coding Interval_45918 chr13 59279800 59280281 + 0 NA Intergenic Intergenic -24629 ENSMUSG00000114743.1 ENSMUSG00000114743 ENSMUST00000224640 Gm34672 lincRNA Interval_109573 chr3 144561195 144562007 + 0 NA intron (ENSMUSG00000040151.9, intron 1 of 3) protein_coding-intron (ENSMUSG00000040151.9, intron 1 of 6) 8557 ENSMUSG00000040151.9 ENSMUSG00000040151 ENSMUST00000199680 Hs2st1 protein_coding Interval_119740 chr4 139611612 139611910 + 0 NA intron (ENSMUSG00000094439.1, intron 4 of 29) protein_coding-intron (ENSMUSG00000041025.15, intron 7 of 10) 8575 ENSMUSG00000094439.1 ENSMUSG00000094439 ENSMUST00000178644 Gm21969 protein_coding Interval_33818 chr11 118728092 118728386 + 0 NA intron (ENSMUSG00000025576.17, intron 2 of 14) protein_coding-intron (ENSMUSG00000025576.17, intron 2 of 14) -63133 ENSMUSG00000085059.1 ENSMUSG00000085059 ENSMUST00000146016 Gm11750 lincRNA Interval_126036 chr5 77000955 77001541 + 0 NA Intergenic Intergenic -5224 ENSMUSG00000063820.11 ENSMUSG00000063820 ENSMUST00000134197 Arl9 protein_coding Interval_153735 chr8 5739494 5739680 + 0 NA Intergenic Intergenic 34160 ENSMUSG00000093281.1 ENSMUSG00000093281 ENSMUST00000175540 Gm22565 miRNA Interval_9412 chr1 156917619 156918036 + 0 NA intron (ENSMUSG00000026594.14, intron 1 of 19) protein_coding-intron (ENSMUSG00000026594.14, intron 1 of 18) 21772 ENSMUSG00000026594.14 ENSMUSG00000026594 ENSMUST00000189648 Ralgps2 protein_coding Interval_169615 chr9 99458160 99459250 + 0 NA intron (ENSMUSG00000046242.8, intron 3 of 11) protein_coding-intron (ENSMUSG00000046242.8, intron 3 of 11) 7230 ENSMUSG00000046242.8 ENSMUSG00000046242 ENSMUST00000056103 Nme9 protein_coding Interval_105858 chr3 89772605 89774219 + 0 NA promoter-TSS (ENSMUSG00000042572.12) protein_coding-promoter-TSS (ENSMUSG00000042572.12) -448 ENSMUSG00000042572.12 ENSMUSG00000042572 ENSMUST00000196726 Ube2q1 protein_coding Interval_70065 chr17 5101009 5102270 + 0 NA intron (ENSMUSG00000069729.14, intron 3 of 19) protein_coding-intron (ENSMUSG00000069729.14, intron 3 of 18) 10471 ENSMUSG00000081783.2 ENSMUSG00000081783 ENSMUST00000122283 Gm15599 processed_pseudogene Interval_129851 chr5 122747807 122748200 + 0 NA TTS (ENSMUSG00000029471.13) protein_coding-TTS (ENSMUSG00000029471.13) 31330 ENSMUSG00000029471.13 ENSMUSG00000029471 ENSMUST00000199599 Camkk2 protein_coding Interval_24394 chr11 32925308 32926540 + 0 NA intron (ENSMUSG00000085402.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000085402.1, intron 1 of 2) 236 ENSMUSG00000085402.1 ENSMUSG00000085402 ENSMUST00000150073 Gm12111 lincRNA Interval_46341 chr13 64071743 64072318 + 0 NA exon (ENSMUSG00000033122.14, exon 5 of 12) protein_coding-exon (ENSMUSG00000033122.14, exon 5 of 12) 17171 ENSMUSG00000033122.14 ENSMUSG00000033122 ENSMUST00000222810 Hsd17b3 protein_coding Interval_102062 chr3 16265277 16266119 + 0 NA Intergenic Intergenic 82462 ENSMUSG00000047213.14 ENSMUSG00000047213 ENSMUST00000108346 Ythdf3 protein_coding Interval_132896 chr5 148590600 148591858 + 0 NA Intergenic Intergenic 22415 ENSMUSG00000107098.1 ENSMUSG00000107098 ENSMUST00000202418 Gm29815 processed_pseudogene Interval_76579 chr17 81542372 81542765 + 0 NA intron (ENSMUSG00000054640.15, intron 2 of 11) protein_coding-intron (ENSMUSG00000054640.15, intron 1 of 9) 100805 ENSMUSG00000079333.3 ENSMUSG00000079333 ENSMUST00000168858 Gm11096 protein_coding Interval_47742 chr13 92151594 92151945 + 0 NA Intergenic Intergenic -20113 ENSMUSG00000021708.17 ENSMUSG00000021708 ENSMUST00000146492 Rasgrf2 protein_coding Interval_168140 chr9 77480987 77481250 + 0 NA intron (ENSMUSG00000032352.16, intron 1 of 1) protein_coding-intron (ENSMUSG00000032352.16, intron 2 of 13) 63730 ENSMUSG00000032352.16 ENSMUSG00000032352 ENSMUST00000183980 Lrrc1 protein_coding Interval_26697 chr11 59794926 59795530 + 0 NA exon (ENSMUSG00000032633.12, exon 10 of 13) protein_coding-exon (ENSMUSG00000032633.12, exon 10 of 13) -7586 ENSMUSG00000043648.7 ENSMUSG00000043648 ENSMUST00000125307 Pld6 protein_coding Interval_105566 chr3 87794684 87797317 + 0 NA promoter-TSS (ENSMUSG00000005640.11) protein_coding-promoter-TSS (ENSMUSG00000005640.11) -838 ENSMUSG00000028072.6 ENSMUSG00000028072 ENSMUST00000029712 Ntrk1 protein_coding Interval_164922 chr9 43115528 43117183 + 0 NA intron (ENSMUSG00000048503.7, intron 1 of 2) protein_coding-intron (ENSMUSG00000048503.7, intron 1 of 2) 181 ENSMUSG00000048503.7 ENSMUSG00000048503 ENSMUST00000216126 Tlcd5 protein_coding Interval_22272 chr11 8467763 8469188 + 0 NA exon (ENSMUSG00000020422.14, exon 1 of 3) protein_coding-exon (ENSMUSG00000020422.14, exon 1 of 3) -84622 ENSMUSG00000083553.1 ENSMUSG00000083553 ENSMUST00000117240 Gm11989 processed_pseudogene Interval_174024 chrX 130266808 130267241 + 0 NA intron (ENSMUSG00000034480.18, intron 24 of 26) protein_coding-intron (ENSMUSG00000034480.18, intron 24 of 26) 135195 ENSMUSG00000084047.1 ENSMUSG00000084047 ENSMUST00000120343 Gm14984 processed_pseudogene Interval_138151 chr6 85501783 85503172 + 0 NA intron (ENSMUSG00000047013.15, intron 1 of 13) protein_coding-intron (ENSMUSG00000047013.15, intron 1 of 12) 381 ENSMUSG00000047013.15 ENSMUSG00000047013 ENSMUST00000161546 Fbxo41 protein_coding Interval_126705 chr5 92149721 92150117 + 0 NA intron (ENSMUSG00000029407.10, intron 1 of 21) protein_coding-intron (ENSMUSG00000029407.10, intron 1 of 23) -8990 ENSMUSG00000084111.4 ENSMUSG00000084111 ENSMUST00000121821 Gm15710 processed_pseudogene Interval_116028 chr4 107097793 107098341 + 0 NA intron (ENSMUSG00000047636.3, intron 1 of 5) protein_coding-intron (ENSMUSG00000047636.3, intron 1 of 3) 359 ENSMUSG00000047636.3 ENSMUSG00000047636 ENSMUST00000221740 Cdcp2 protein_coding Interval_27241 chr11 64667241 64667847 + 0 NA Intergenic Intergenic -76904 ENSMUSG00000080430.1 ENSMUSG00000080430 ENSMUST00000116780 Gm24275 miRNA Interval_162764 chr9 8732470 8734603 + 0 NA intron (ENSMUSG00000111602.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000111602.1, intron 1 of 2) 7452 ENSMUSG00000111602.1 ENSMUSG00000111602 ENSMUST00000214779 Gm32014 lincRNA Interval_105464 chr3 86809664 86809859 + 0 NA intron (ENSMUSG00000028078.14, intron 8 of 15) protein_coding-intron (ENSMUSG00000028078.14, intron 8 of 15) -31108 ENSMUSG00000104108.1 ENSMUSG00000104108 ENSMUST00000194490 Gm37876 antisense Interval_32236 chr11 106374213 106375143 + 0 NA promoter-TSS (ENSMUSG00000009210.10) protein_coding-promoter-TSS (ENSMUSG00000009210.10) -167 ENSMUSG00000009210.10 ENSMUSG00000009210 ENSMUST00000190268 Prr29 protein_coding Interval_61925 chr15 85294500 85294883 + 0 NA Intergenic Intergenic 31237 ENSMUSG00000006369.14 ENSMUSG00000006369 ENSMUST00000160798 Fbln1 protein_coding Interval_141407 chr6 128076966 128077755 + 0 NA intron (ENSMUSG00000030352.15, intron 1 of 7) protein_coding-intron (ENSMUSG00000030352.15, intron 2 of 8) 17666 ENSMUSG00000076327.1 ENSMUSG00000076327 ENSMUST00000102372 Gm26338 miRNA Interval_152837 chr7 138601275 138601619 + 0 NA Intergenic Intergenic 47205 ENSMUSG00000110037.1 ENSMUSG00000110037 ENSMUST00000209503 4930543N07Rik lincRNA Interval_16920 chr10 69888417 69888694 + 0 NA intron (ENSMUSG00000069601.14, intron 17 of 42) protein_coding-intron (ENSMUSG00000069601.14, intron 1 of 16) -286456 ENSMUSG00000048701.13 ENSMUSG00000048701 ENSMUST00000135607 Ccdc6 protein_coding Interval_82567 chr18 75207517 75208261 + 0 NA intron (ENSMUSG00000035765.10, intron 14 of 16) protein_coding-intron (ENSMUSG00000035765.10, intron 14 of 16) -25075 ENSMUSG00000094153.2 ENSMUSG00000094153 ENSMUST00000179328 Gm8807 processed_pseudogene Interval_90218 chr2 29086446 29086737 + 0 NA exon (ENSMUSG00000026803.17, exon 12 of 12) protein_coding-exon (ENSMUSG00000026803.17, exon 12 of 12) -2075 ENSMUSG00000086519.1 ENSMUSG00000086519 ENSMUST00000141935 Gm13393 lincRNA Interval_52148 chr14 37134678 37135866 + 0 NA promoter-TSS (ENSMUSG00000041028.16) protein_coding-promoter-TSS (ENSMUSG00000041028.16) -18 ENSMUSG00000041028.16 ENSMUSG00000041028 ENSMUST00000223921 Ghitm protein_coding Interval_70549 chr17 11912216 11913815 + 0 NA intron (ENSMUSG00000023826.16, intron 8 of 10) protein_coding-intron (ENSMUSG00000023826.16, intron 9 of 11) -180670 ENSMUSG00000104466.1 ENSMUSG00000104466 ENSMUST00000194203 Gm10513 TEC Interval_123658 chr5 34351751 34352480 + 0 NA exon (ENSMUSG00000029110.13, exon 8 of 8) protein_coding-exon (ENSMUSG00000029110.13, exon 8 of 8) 999 ENSMUSG00000029110.13 ENSMUSG00000029110 ENSMUST00000183265 Rnf4 protein_coding Interval_68994 chr16 90003309 90003902 + 0 NA intron (ENSMUSG00000002489.16, intron 2 of 11) protein_coding-intron (ENSMUSG00000002489.16, intron 2 of 11) -86378 ENSMUSG00000116536.1 ENSMUSG00000116536 ENSMUST00000232386 Gm2805 processed_pseudogene Interval_159149 chr8 91081691 91082711 + 0 NA intron (ENSMUSG00000031666.15, intron 4 of 20) protein_coding-intron (ENSMUSG00000031666.15, intron 4 of 21) 12079 ENSMUSG00000031666.15 ENSMUSG00000031666 ENSMUST00000126689 Rbl2 protein_coding Interval_111187 chr4 14509787 14510191 + 0 NA intron (ENSMUSG00000040569.13, intron 2 of 4) protein_coding-intron (ENSMUSG00000040569.13, intron 16 of 18) 76098 ENSMUSG00000081239.3 ENSMUSG00000081239 ENSMUST00000121022 Gm11836 processed_pseudogene Interval_58057 chr15 27508384 27509178 + 0 NA intron (ENSMUSG00000022265.7, intron 1 of 11) protein_coding-intron (ENSMUSG00000022265.7, intron 1 of 11) 4869 ENSMUSG00000115543.1 ENSMUSG00000115543 ENSMUST00000227224 B230362B09Rik TEC Interval_49547 chr13 112861104 112862591 + 0 NA intron (ENSMUSG00000021759.14, intron 4 of 5) protein_coding-intron (ENSMUSG00000021759.14, intron 4 of 5) -22379 ENSMUSG00000098067.1 ENSMUSG00000098067 ENSMUST00000182295 Gm26943 processed_pseudogene Interval_51877 chr14 33288505 33288699 + 0 NA intron (ENSMUSG00000063506.14, intron 2 of 3) protein_coding-intron (ENSMUSG00000063506.14, intron 3 of 10) -67671 ENSMUSG00000115597.1 ENSMUSG00000115597 ENSMUST00000226933 Gm49030 antisense Interval_157377 chr8 69958927 69959357 + 0 NA promoter-TSS (ENSMUSG00000036180.15) protein_coding-promoter-TSS (ENSMUSG00000036180.15) 37242 ENSMUSG00000036180.15 ENSMUSG00000036180 ENSMUST00000211960 Gatad2a protein_coding Interval_171854 chr9 121788670 121788895 + 0 NA TTS (ENSMUSG00000032523.11) protein_coding-TTS (ENSMUSG00000032523.11) 3072 ENSMUSG00000032523.11 ENSMUSG00000032523 ENSMUST00000217652 Hhatl protein_coding Interval_137541 chr6 72992956 72993850 + 0 NA Intergenic Intergenic -10341 ENSMUSG00000107661.1 ENSMUSG00000107661 ENSMUST00000203834 Gm18402 processed_pseudogene Interval_50697 chr14 18309717 18310090 + 0 NA intron (ENSMUSG00000021774.13, intron 3 of 5) protein_coding-intron (ENSMUSG00000021774.13, intron 3 of 5) 21841 ENSMUSG00000021774.13 ENSMUSG00000021774 ENSMUST00000161580 Ube2e1 protein_coding Interval_29026 chr11 79967604 79968696 + 0 NA Intergenic Intergenic -5783 ENSMUSG00000035575.11 ENSMUSG00000035575 ENSMUST00000146127 Utp6 protein_coding Interval_145001 chr7 29358214 29358459 + 0 NA intron (ENSMUSG00000030583.16, intron 3 of 13) protein_coding-intron (ENSMUSG00000030583.16, intron 13 of 22) 19269 ENSMUSG00000030583.16 ENSMUSG00000030583 ENSMUST00000183085 Sipa1l3 protein_coding Interval_160053 chr8 106054386 106054596 + 0 NA TTS (ENSMUSG00000031901.12) protein_coding-TTS (ENSMUSG00000031901.12) -4349 ENSMUSG00000031902.10 ENSMUSG00000031902 ENSMUST00000212671 Nfatc3 protein_coding Interval_97957 chr2 146183906 146184217 + 0 NA intron (ENSMUSG00000037143.17, intron 9 of 10) protein_coding-intron (ENSMUSG00000037143.17, intron 25 of 26) -30552 ENSMUSG00000037143.17 ENSMUSG00000037143 ENSMUST00000167179 Cfap61 protein_coding Interval_4768 chr1 78508880 78510063 + 0 NA intron (ENSMUSG00000090486.2, intron 1 of 1) protein_coding-intron (ENSMUSG00000090486.2, intron 1 of 1) -2341 ENSMUSG00000012187.13 ENSMUSG00000012187 ENSMUST00000125458 Mogat1 protein_coding Interval_158184 chr8 79609052 79609330 + 0 NA Intergenic Intergenic -51893 ENSMUSG00000036990.13 ENSMUSG00000036990 ENSMUST00000172614 Otud4 protein_coding Interval_94289 chr2 87515073 87517330 + 0 NA TTS (ENSMUSG00000081762.1) processed_pseudogene-TTS (ENSMUSG00000081762.1) 1299 ENSMUSG00000081762.1 ENSMUSG00000081762 ENSMUST00000122437 Gm13738 processed_pseudogene Interval_45240 chr13 53442270 53442897 + 0 NA intron (ENSMUSG00000107008.3, intron 6 of 7) lincRNA-intron (ENSMUSG00000107008.3, intron 6 of 7) -27753 ENSMUSG00000107305.1 ENSMUSG00000107305 ENSMUST00000202970 Gm43262 lincRNA Interval_102694 chr3 30237721 30237911 + 0 NA TTS (ENSMUSG00000027684.16) protein_coding-TTS (ENSMUSG00000027684.16) 144 ENSMUSG00000027684.16 ENSMUSG00000027684 ENSMUST00000061088 Mecom protein_coding Interval_96962 chr2 130048925 130049492 + 0 NA exon (ENSMUSG00000027401.9, exon 13 of 13) protein_coding-exon (ENSMUSG00000027401.9, exon 13 of 13) -22516 ENSMUSG00000089152.1 ENSMUSG00000089152 ENSMUST00000158527 Gm22424 snoRNA Interval_28315 chr11 75159507 75159792 + 0 NA promoter-TSS (ENSMUSG00000038290.15) protein_coding-promoter-TSS (ENSMUSG00000038290.15) 16 ENSMUSG00000038290.15 ENSMUSG00000038290 ENSMUST00000153226 Smg6 protein_coding Interval_7613 chr1 132511610 132511942 + 0 NA TTS (ENSMUSG00000053024.14) protein_coding-TTS (ENSMUSG00000053024.14) 4887 ENSMUSG00000048174.2 ENSMUSG00000048174 ENSMUST00000188789 Tmem81 protein_coding Interval_31491 chr11 100985740 100986435 + 0 NA Intergenic Intergenic -15536 ENSMUSG00000004044.9 ENSMUSG00000004044 ENSMUST00000132934 Cavin1 protein_coding Interval_107377 chr3 107035471 107036957 + 0 NA promoter-TSS (ENSMUSG00000047959.4) protein_coding-promoter-TSS (ENSMUSG00000047959.4) 45 ENSMUSG00000047959.4 ENSMUSG00000047959 ENSMUST00000052718 Kcna3 protein_coding Interval_99106 chr2 157247451 157248739 + 0 NA intron (ENSMUSG00000074627.11, intron 5 of 5) protein_coding-intron (ENSMUSG00000074627.11, intron 8 of 24) 31454 ENSMUSG00000074627.11 ENSMUSG00000074627 ENSMUST00000150035 Mroh8 protein_coding Interval_20659 chr10 120083715 120083928 + 0 NA TTS (ENSMUSG00000020228.11) protein_coding-TTS (ENSMUSG00000020228.11) 29044 ENSMUSG00000020228.11 ENSMUSG00000020228 ENSMUST00000154501 Helb protein_coding Interval_92291 chr2 58458949 58459916 + 0 NA intron (ENSMUSG00000026836.15, intron 7 of 10) protein_coding-intron (ENSMUSG00000026836.15, intron 8 of 10) -10684 ENSMUSG00000091922.1 ENSMUSG00000091922 ENSMUST00000167423 Gm17409 TEC Interval_40582 chr12 105839234 105839450 + 0 NA TTS (ENSMUSG00000021111.15) protein_coding-TTS (ENSMUSG00000021111.15) 10275 ENSMUSG00000021111.15 ENSMUSG00000021111 ENSMUST00000172089 Papola protein_coding Interval_24018 chr11 29534830 29535201 + 0 NA intron (ENSMUSG00000020459.14, intron 2 of 4) protein_coding-intron (ENSMUSG00000020459.14, intron 5 of 13) 8568 ENSMUSG00000020459.14 ENSMUSG00000020459 ENSMUST00000129893 Mtif2 protein_coding Interval_144237 chr7 23585709 23585935 + 0 NA Intergenic Intergenic 10296 ENSMUSG00000094602.2 ENSMUSG00000094602 ENSMUST00000170290 Vmn1r169 protein_coding Interval_157151 chr8 66475604 66476001 + 0 NA exon (ENSMUSG00000025591.6, exon 7 of 7) protein_coding-exon (ENSMUSG00000025591.6, exon 7 of 7) 10719 ENSMUSG00000025591.6 ENSMUSG00000025591 ENSMUST00000213036 Tma16 protein_coding Interval_47663 chr13 90926866 90927117 + 0 NA Intergenic Intergenic 3774 ENSMUSG00000049517.8 ENSMUSG00000049517 ENSMUST00000224430 Rps23 protein_coding Interval_100639 chr2 170657435 170659102 + 0 NA intron (ENSMUSG00000085158.1, intron 2 of 2) lincRNA-intron (ENSMUSG00000085158.1, intron 2 of 2) 4197 ENSMUSG00000085158.1 ENSMUSG00000085158 ENSMUST00000147141 Gm14264 lincRNA Interval_160896 chr8 114767499 114769054 + 0 NA intron (ENSMUSG00000004637.15, intron 8 of 8) protein_coding-intron (ENSMUSG00000004637.15, intron 8 of 8) 56109 ENSMUSG00000004637.15 ENSMUSG00000004637 ENSMUST00000162052 Wwox protein_coding Interval_94778 chr2 94246874 94247340 + 0 NA intron (ENSMUSG00000075020.6, intron 1 of 4) lincRNA-intron (ENSMUSG00000075020.6, intron 1 of 5) -5654 ENSMUSG00000065511.1 ENSMUSG00000065511 ENSMUST00000083577 Mir129-2 miRNA Interval_64166 chr16 8794818 8795222 + 0 NA Intergenic Intergenic -28744 ENSMUSG00000084737.1 ENSMUSG00000084737 ENSMUST00000122788 Gm25805 snRNA Interval_35419 chr12 21472504 21472958 + 0 NA Intergenic Intergenic 54852 ENSMUSG00000097055.2 ENSMUSG00000097055 ENSMUST00000227598 Gm4419 antisense Interval_170524 chr9 108516478 108518204 + 0 NA promoter-TSS (ENSMUSG00000006673.14) protein_coding-promoter-TSS (ENSMUSG00000006673.14) 535 ENSMUSG00000006673.14 ENSMUSG00000006673 ENSMUST00000194387 Qrich1 protein_coding Interval_161874 chr8 123357311 123357737 + 0 NA intron (ENSMUSG00000010154.7, intron 4 of 13) protein_coding-intron (ENSMUSG00000010154.7, intron 5 of 14) 7273 ENSMUSG00000010154.7 ENSMUSG00000010154 ENSMUST00000212404 Spire2 protein_coding Interval_53015 chr14 53505579 53505842 + 0 NA promoter-TSS (ENSMUSG00000096551.2) TR_V_gene-promoter-TSS (ENSMUSG00000096551.2) -17 ENSMUSG00000096551.2 ENSMUSG00000096551 ENSMUST00000103583 Trav10 TR_V_gene Interval_44248 chr13 42905497 42906038 + 0 NA intron (ENSMUSG00000054728.17, intron 1 of 1) protein_coding-intron (ENSMUSG00000054728.17, intron 1 of 11) -10884 ENSMUSG00000054728.17 ENSMUSG00000054728 ENSMUST00000161201 Phactr1 protein_coding Interval_69418 chr16 93079705 93080205 + 0 NA Intergenic Intergenic 7200 ENSMUSG00000098983.1 ENSMUSG00000098983 ENSMUST00000184529 Gm28003 miRNA Interval_7871 chr1 134304229 134305516 + 0 NA promoter-TSS (ENSMUSG00000026458.13) protein_coding-promoter-TSS (ENSMUSG00000026458.13) -64 ENSMUSG00000026458.13 ENSMUSG00000026458 ENSMUST00000186553 Ppfia4 protein_coding Interval_21665 chr11 3547987 3550078 + 0 NA Intergenic Intergenic -9740 ENSMUSG00000020439.17 ENSMUSG00000020439 ENSMUST00000151804 Smtn protein_coding Interval_102311 chr3 21709764 21710049 + 0 NA intron (ENSMUSG00000105440.1, intron 3 of 3) lincRNA-intron (ENSMUSG00000105440.1, intron 3 of 3) 7091 ENSMUSG00000105440.1 ENSMUSG00000105440 ENSMUST00000200150 Gm31693 lincRNA Interval_43878 chr13 37801229 37803038 + 0 NA intron (ENSMUSG00000039087.17, intron 1 of 3) protein_coding-intron (ENSMUSG00000039087.17, intron 1 of 3) -2343 ENSMUSG00000114370.1 ENSMUSG00000114370 ENSMUST00000224624 Gm46411 antisense Interval_91184 chr2 35723028 35723599 + 0 NA intron (ENSMUSG00000026883.17, intron 8 of 10) protein_coding-intron (ENSMUSG00000026883.17, intron 12 of 13) 12986 ENSMUSG00000026883.17 ENSMUSG00000026883 ENSMUST00000156669 Dab2ip protein_coding Interval_4164 chr1 71071623 71071879 + 0 NA intron (ENSMUSG00000026196.7, intron 4 of 10) protein_coding-intron (ENSMUSG00000026196.7, intron 4 of 10) 31395 ENSMUSG00000026196.7 ENSMUSG00000026196 ENSMUST00000027393 Bard1 protein_coding Interval_143155 chr7 3720169 3720480 + 0 NA promoter-TSS (ENSMUSG00000058818.13) protein_coding-promoter-TSS (ENSMUSG00000058818.13) 38 ENSMUSG00000058818.13 ENSMUSG00000058818 ENSMUST00000137474 Pirb protein_coding Interval_115643 chr4 101557977 101558624 + 0 NA intron (ENSMUSG00000028528.17, intron 1 of 18) protein_coding-intron (ENSMUSG00000028528.17, intron 1 of 18) 3205 ENSMUSG00000089446.1 ENSMUSG00000089446 ENSMUST00000158821 Gm22533 misc_RNA Interval_128316 chr5 112498769 112499484 + 0 NA intron (ENSMUSG00000058153.15, intron 1 of 14) protein_coding-intron (ENSMUSG00000058153.15, intron 1 of 16) 49700 ENSMUSG00000072722.2 ENSMUSG00000072722 ENSMUST00000100882 Gm6588 protein_coding Interval_23684 chr11 24559654 24559832 + 0 NA intron (ENSMUSG00000086892.1, intron 1 of 3) lincRNA-intron (ENSMUSG00000086892.1, intron 1 of 3) -5685 ENSMUSG00000088502.1 ENSMUSG00000088502 ENSMUST00000157877 Gm22787 snRNA Interval_57457 chr15 11255333 11255564 + 0 NA intron (ENSMUSG00000047497.10, intron 7 of 23) protein_coding-intron (ENSMUSG00000047497.10, intron 7 of 23) 106289 ENSMUSG00000089304.1 ENSMUSG00000089304 ENSMUST00000158679 Gm24844 snoRNA Interval_12221 chr1 190928048 190929306 + 0 NA promoter-TSS (ENSMUSG00000026634.16) protein_coding-promoter-TSS (ENSMUSG00000026634.16) -8575 ENSMUSG00000026634.16 ENSMUSG00000026634 ENSMUST00000146048 Angel2 protein_coding Interval_168346 chr9 79157993 79158161 + 0 NA Intergenic Intergenic 43930 ENSMUSG00000110923.1 ENSMUSG00000110923 ENSMUST00000216797 Gm47499 lincRNA Interval_173527 chrX 98741675 98741959 + 0 NA intron (ENSMUSG00000031214.13, intron 4 of 4) protein_coding-intron (ENSMUSG00000031214.13, intron 5 of 24) -14405 ENSMUSG00000099037.1 ENSMUSG00000099037 ENSMUST00000185074 Gm27554 miRNA Interval_144679 chr7 27490599 27491262 + 0 NA TTS (ENSMUSG00000008384.8) protein_coding-TTS (ENSMUSG00000008384.8) 3555 ENSMUSG00000008384.8 ENSMUSG00000008384 ENSMUST00000135881 Sertad1 protein_coding Interval_110341 chr3 157114562 157115587 + 0 NA intron (ENSMUSG00000040037.13, intron 4 of 6) protein_coding-intron (ENSMUSG00000040037.13, intron 4 of 6) 43330 ENSMUSG00000105803.1 ENSMUSG00000105803 ENSMUST00000196666 Gm43526 TEC Interval_174775 chrX 166473747 166474135 + 0 NA intron (ENSMUSG00000079316.10, intron 1 of 4) protein_coding-intron (ENSMUSG00000079316.10, intron 1 of 4) 1494 ENSMUSG00000079316.10 ENSMUSG00000079316 ENSMUST00000149315 Rab9 protein_coding Interval_96685 chr2 127133414 127134503 + 0 NA promoter-TSS (ENSMUSG00000034906.15) protein_coding-promoter-TSS (ENSMUSG00000034906.15) 8632 ENSMUSG00000074825.4 ENSMUSG00000074825 ENSMUST00000154021 Itpripl1 protein_coding Interval_100367 chr2 168669796 168670741 + 0 NA promoter-TSS (ENSMUSG00000027546.15) protein_coding-promoter-TSS (ENSMUSG00000027546.15) -29509 ENSMUSG00000105496.1 ENSMUSG00000105496 ENSMUST00000200215 Mir7004 miRNA Interval_118772 chr4 133625313 133626517 + 0 NA intron (ENSMUSG00000037553.14, intron 2 of 7) protein_coding-intron (ENSMUSG00000037553.14, intron 2 of 7) 12768 ENSMUSG00000083885.1 ENSMUSG00000083885 ENSMUST00000119668 Gm13213 processed_pseudogene Interval_32765 chr11 110406625 110407291 + 0 NA intron (ENSMUSG00000020623.11, intron 1 of 11) protein_coding-intron (ENSMUSG00000020623.11, intron 1 of 11) -69242 ENSMUSG00000018800.14 ENSMUSG00000018800 ENSMUST00000148984 Abca5 protein_coding Interval_56188 chr14 111544180 111545069 + 0 NA exon (ENSMUSG00000115818.1, exon 1 of 1) processed_pseudogene-exon (ENSMUSG00000115818.1, exon 1 of 1) 423 ENSMUSG00000115818.1 ENSMUSG00000115818 ENSMUST00000227161 Gm18580 processed_pseudogene Interval_68899 chr16 88128922 88129252 + 0 NA intron (ENSMUSG00000022935.16, intron 1 of 16) protein_coding-intron (ENSMUSG00000022935.16, intron 1 of 15) 160777 ENSMUSG00000022935.16 ENSMUSG00000022935 ENSMUST00000210910 Grik1 protein_coding Interval_110331 chr3 157002610 157002802 + 0 NA exon (ENSMUSG00000106018.1, exon 1 of 1) TEC-exon (ENSMUSG00000106018.1, exon 1 of 1) 2289 ENSMUSG00000106018.1 ENSMUSG00000106018 ENSMUST00000198749 Gm43527 TEC Interval_25100 chr11 43929224 43929932 + 0 NA Intergenic Intergenic -29511 ENSMUSG00000087172.1 ENSMUSG00000087172 ENSMUST00000148504 Gm12153 lincRNA Interval_35313 chr12 20442752 20442949 + 0 NA Intergenic Intergenic -8825 ENSMUSG00000116537.1 ENSMUSG00000116537 ENSMUST00000232443 Gm49698 lincRNA Interval_31466 chr11 100837248 100837780 + 0 NA intron (ENSMUSG00000020919.11, intron 1 of 5) protein_coding-intron (ENSMUSG00000020919.11, intron 1 of 18) 13024 ENSMUSG00000020919.11 ENSMUSG00000020919 ENSMUST00000126266 Stat5b protein_coding Interval_23807 chr11 26437822 26438703 + 0 NA intron (ENSMUSG00000004018.9, intron 3 of 3) protein_coding-intron (ENSMUSG00000004018.9, intron 7 of 13) 29055 ENSMUSG00000081811.1 ENSMUSG00000081811 ENSMUST00000118404 Gm12713 processed_pseudogene Interval_37827 chr12 72314029 72314746 + 0 NA intron (ENSMUSG00000021087.18, intron 1 of 8) protein_coding-intron (ENSMUSG00000021087.18, intron 1 of 8) -77839 ENSMUSG00000021087.18 ENSMUSG00000021087 ENSMUST00000221756 Rtn1 protein_coding Interval_3799 chr1 63137144 63140542 + 0 NA intron (ENSMUSG00000084799.7, intron 1 of 3) lincRNA-intron (ENSMUSG00000084799.7, intron 1 of 3) 6118 ENSMUSG00000025968.16 ENSMUSG00000025968 ENSMUST00000189664 Ndufs1 protein_coding Interval_99396 chr2 160586992 160587575 + 0 NA intron (ENSMUSG00000078956.3, intron 1 of 2) lincRNA-intron (ENSMUSG00000078956.3, intron 1 of 2) 3926 ENSMUSG00000078955.3 ENSMUSG00000078955 ENSMUST00000128681 Gm14222 sense_intronic Interval_142097 chr6 137142736 137143239 + 0 NA intron (ENSMUSG00000030222.13, intron 2 of 2) protein_coding-intron (ENSMUSG00000030222.13, intron 2 of 4) -2924 ENSMUSG00000030222.13 ENSMUSG00000030222 ENSMUST00000149100 Rerg protein_coding Interval_122293 chr5 20985956 20986520 + 0 NA TTS (ENSMUSG00000028771.13) protein_coding-TTS (ENSMUSG00000028771.13) 35249 ENSMUSG00000101013.1 ENSMUSG00000101013 ENSMUST00000190567 A630072M18Rik antisense Interval_11071 chr1 179156250 179156467 + 0 NA intron (ENSMUSG00000055067.15, intron 5 of 11) protein_coding-intron (ENSMUSG00000055067.15, intron 2 of 8) -238744 ENSMUSG00000089713.1 ENSMUSG00000089713 ENSMUST00000162545 Gm16564 antisense Interval_90574 chr2 31214067 31215135 + 0 NA TTS (ENSMUSG00000000194.13) protein_coding-TTS (ENSMUSG00000000194.13) -3254 ENSMUSG00000087430.1 ENSMUSG00000087430 ENSMUST00000146769 Gm13405 antisense Interval_49700 chr13 114075615 114076414 + 0 NA intron (ENSMUSG00000042348.10, intron 5 of 5) protein_coding-intron (ENSMUSG00000042348.10, intron 4 of 4) 44402 ENSMUSG00000114696.1 ENSMUSG00000114696 ENSMUST00000223997 Gm47479 TEC Interval_59518 chr15 54919819 54921313 + 0 NA promoter-TSS (ENSMUSG00000022425.16) protein_coding-promoter-TSS (ENSMUSG00000022425.16) -31504 ENSMUSG00000097286.2 ENSMUSG00000097286 ENSMUST00000181704 Gm26684 bidirectional_promoter_lncRNA Interval_173247 chrX 75143126 75144120 + 0 NA promoter-TSS (ENSMUSG00000080254.4) processed_pseudogene-promoter-TSS (ENSMUSG00000080254.4) -65 ENSMUSG00000080254.4 ENSMUSG00000080254 ENSMUST00000116535 Fam220-ps processed_pseudogene Interval_101382 chr2 180925314 180925775 + 0 NA Intergenic Intergenic -3479 ENSMUSG00000038840.7 ENSMUSG00000038840 ENSMUST00000108875 Birc7 protein_coding Interval_130922 chr5 134067901 134068167 + 0 NA Intergenic Intergenic 23417 ENSMUSG00000106800.1 ENSMUSG00000106800 ENSMUST00000202497 1700030N18Rik TEC Interval_27833 chr11 70309512 70310013 + 0 NA Intergenic Intergenic 12686 ENSMUSG00000018907.10 ENSMUSG00000018907 ENSMUST00000149060 Alox12e protein_coding Interval_66715 chr16 36561072 36562085 + 0 NA promoter-TSS (ENSMUSG00000051980.13) protein_coding-promoter-TSS (ENSMUSG00000051980.13) 563 ENSMUSG00000051980.13 ENSMUSG00000051980 ENSMUST00000174750 Casr protein_coding Interval_116423 chr4 111713059 111713362 + 0 NA Intergenic Intergenic -6853 ENSMUSG00000034401.16 ENSMUSG00000034401 ENSMUST00000132802 Spata6 protein_coding Interval_80628 chr18 44805198 44805649 + 0 NA intron (ENSMUSG00000071856.10, intron 1 of 18) protein_coding-intron (ENSMUSG00000071856.10, intron 1 of 18) -15710 ENSMUSG00000117832.1 ENSMUSG00000117832 ENSMUST00000237858 Gm50263 processed_pseudogene Interval_135635 chr6 42116190 42116503 + 0 NA Intergenic Intergenic -9879 ENSMUSG00000107543.1 ENSMUSG00000107543 ENSMUST00000204685 Gm34701 transcribed_processed_pseudogene Interval_167854 chr9 73084158 73086382 + 0 NA TTS (ENSMUSG00000032202.11) protein_coding-TTS (ENSMUSG00000032202.11) -17128 ENSMUSG00000092622.8 ENSMUSG00000092622 ENSMUST00000167514 Khdc3 protein_coding Interval_169155 chr9 94670094 94670626 + 0 NA intron (ENSMUSG00000031129.9, intron 1 of 4) protein_coding-intron (ENSMUSG00000031129.9, intron 1 of 15) 428 ENSMUSG00000031129.9 ENSMUSG00000031129 ENSMUST00000162329 Slc9a9 protein_coding Interval_4967 chr1 83045252 83045747 + 0 NA exon (ENSMUSG00000113267.1, exon 1 of 1) protein_coding-exon (ENSMUSG00000113267.1, exon 1 of 1) 567 ENSMUSG00000113267.1 ENSMUSG00000113267 ENSMUST00000222567 Gm47969 protein_coding Interval_109790 chr3 147113128 147113366 + 0 NA intron (ENSMUSG00000103334.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000103334.1, intron 1 of 1) 17063 ENSMUSG00000103334.1 ENSMUSG00000103334 ENSMUST00000193142 Gm29771 lincRNA Interval_131667 chr5 139160958 139161164 + 0 NA intron (ENSMUSG00000025857.10, intron 4 of 12) protein_coding-intron (ENSMUSG00000025857.10, intron 4 of 12) -10368 ENSMUSG00000086873.1 ENSMUSG00000086873 ENSMUST00000151512 Gm15672 processed_transcript Interval_12711 chr10 4435149 4435609 + 0 NA TTS (ENSMUSG00000061759.15) protein_coding-TTS (ENSMUSG00000061759.15) 2739 ENSMUSG00000061759.15 ENSMUSG00000061759 ENSMUST00000131636 Armt1 protein_coding Interval_140032 chr6 113543416 113545225 + 0 NA intron (ENSMUSG00000034023.16, intron 8 of 42) protein_coding-intron (ENSMUSG00000034023.16, intron 8 of 43) 12616 ENSMUSG00000034023.16 ENSMUSG00000034023 ENSMUST00000124262 Fancd2 protein_coding Interval_38857 chr12 83440750 83441084 + 0 NA promoter-TSS (ENSMUSG00000021221.15) protein_coding-promoter-TSS (ENSMUSG00000021221.15) 46799 ENSMUSG00000021221.15 ENSMUSG00000021221 ENSMUST00000177801 Dpf3 protein_coding Interval_109452 chr3 142532187 142532371 + 0 NA intron (ENSMUSG00000040253.15, intron 1 of 10) protein_coding-intron (ENSMUSG00000040253.15, intron 1 of 10) 1937 ENSMUSG00000040253.15 ENSMUSG00000040253 ENSMUST00000045097 Gbp7 protein_coding Interval_54601 chr14 71000807 71001375 + 0 NA Intergenic Intergenic -86179 ENSMUSG00000115671.1 ENSMUSG00000115671 ENSMUST00000227525 Gm49289 lincRNA Interval_106587 chr3 97540012 97540469 + 0 NA Intergenic Intergenic -69692 ENSMUSG00000105004.1 ENSMUSG00000105004 ENSMUST00000198613 Gm43075 TEC Interval_72403 chr17 29629016 29630438 + 0 NA intron (ENSMUSG00000090083.11, intron 5 of 8) protein_coding-intron (ENSMUSG00000090083.11, intron 4 of 7) -3791 ENSMUSG00000090083.11 ENSMUSG00000090083 ENSMUST00000172800 Rnf8 protein_coding Interval_89291 chr2 18906404 18907123 + 0 NA promoter-TSS (ENSMUSG00000026737.12) protein_coding-promoter-TSS (ENSMUSG00000026737.12) -489 ENSMUSG00000026737.12 ENSMUSG00000026737 ENSMUST00000152981 Pip4k2a protein_coding Interval_29198 chr11 81462271 81462491 + 0 NA intron (ENSMUSG00000020704.13, intron 1 of 9) protein_coding-intron (ENSMUSG00000020704.13, intron 1 of 9) 77368 ENSMUSG00000086971.1 ENSMUSG00000086971 ENSMUST00000141593 4930527B05Rik antisense Interval_56451 chr14 118853754 118855491 + 0 NA promoter-TSS (ENSMUSG00000022132.15) protein_coding-promoter-TSS (ENSMUSG00000022132.15) -110 ENSMUSG00000022132.15 ENSMUSG00000022132 ENSMUST00000100314 Cldn10 protein_coding Interval_153283 chr7 143261891 143262095 + 0 NA exon (ENSMUSG00000101609.2, exon 1 of 1) antisense-exon (ENSMUSG00000101609.2, exon 1 of 1) 10626 ENSMUSG00000098857.1 ENSMUSG00000098857 ENSMUST00000183938 Gm27395 misc_RNA Interval_159811 chr8 103983886 103984109 + 0 NA Intergenic Intergenic -87152 ENSMUSG00000110019.1 ENSMUSG00000110019 ENSMUST00000211125 Gm8748 processed_pseudogene Interval_85133 chr19 23089718 23090494 + 0 NA Intergenic Intergenic -14182 ENSMUSG00000097930.2 ENSMUSG00000097930 ENSMUST00000181623 C330002G04Rik lincRNA Interval_152120 chr7 129634340 129634741 + 0 NA TTS (ENSMUSG00000042055.13) protein_coding-TTS (ENSMUSG00000042055.13) -24388 ENSMUSG00000108580.1 ENSMUSG00000108580 ENSMUST00000205844 Gm39094 lincRNA Interval_165517 chr9 48958024 48958271 + 0 NA intron (ENSMUSG00000008590.4, intron 2 of 8) protein_coding-intron (ENSMUSG00000008590.4, intron 2 of 8) 6843 ENSMUSG00000008590.4 ENSMUSG00000008590 ENSMUST00000008734 Htr3b protein_coding Interval_74060 chr17 46321449 46322362 + 0 NA TTS (ENSMUSG00000032842.13) protein_coding-TTS (ENSMUSG00000032842.13) 6071 ENSMUSG00000032842.13 ENSMUSG00000032842 ENSMUST00000170168 Abcc10 protein_coding Interval_64471 chr16 11758374 11758597 + 0 NA Intergenic Intergenic -19944 ENSMUSG00000115936.1 ENSMUSG00000115936 ENSMUST00000229695 4833415N18Rik lincRNA Interval_82966 chr18 80056035 80056615 + 0 NA intron (ENSMUSG00000056214.9, intron 1 of 2) protein_coding-intron (ENSMUSG00000056214.9, intron 1 of 2) 9435 ENSMUSG00000056214.9 ENSMUSG00000056214 ENSMUST00000070219 Pard6g protein_coding Interval_151342 chr7 121245533 121246456 + 0 NA Intergenic Intergenic -11365 ENSMUSG00000108627.1 ENSMUSG00000108627 ENSMUST00000205627 Gm45079 lincRNA Interval_138029 chr6 84393366 84393583 + 0 NA Intergenic Intergenic 30364 ENSMUSG00000107797.1 ENSMUSG00000107797 ENSMUST00000203521 Gm10445 lincRNA Interval_8113 chr1 135792216 135795273 + 0 NA intron (ENSMUSG00000026418.16, intron 2 of 6) protein_coding-intron (ENSMUSG00000026418.16, intron 2 of 6) 14310 ENSMUSG00000026418.16 ENSMUSG00000026418 ENSMUST00000129217 Tnni1 protein_coding Interval_167012 chr9 64514650 64515225 + 0 NA intron (ENSMUSG00000036466.17, intron 4 of 22) protein_coding-intron (ENSMUSG00000036466.17, intron 4 of 24) 129311 ENSMUSG00000036466.17 ENSMUSG00000036466 ENSMUST00000153934 Megf11 protein_coding Interval_165761 chr9 52259509 52260185 + 0 NA Intergenic Intergenic -31352 ENSMUSG00000077796.1 ENSMUSG00000077796 ENSMUST00000104608 Gm25562 snoRNA Interval_84140 chr19 7481920 7483760 + 0 NA intron (ENSMUSG00000024758.15, intron 1 of 8) protein_coding-intron (ENSMUSG00000024758.15, intron 1 of 7) 427 ENSMUSG00000024758.15 ENSMUSG00000024758 ENSMUST00000235593 Rtn3 protein_coding Interval_24751 chr11 36677411 36678221 + 0 NA promoter-TSS (ENSMUSG00000049336.16) protein_coding-promoter-TSS (ENSMUSG00000049336.16) -45066 ENSMUSG00000065173.1 ENSMUSG00000065173 ENSMUST00000083239 Gm22127 snRNA Interval_4558 chr1 75006143 75006472 + 0 NA intron (ENSMUSG00000026162.7, intron 2 of 4) protein_coding-intron (ENSMUSG00000026162.7, intron 2 of 4) 52055 ENSMUSG00000103145.1 ENSMUSG00000103145 ENSMUST00000194616 Gm37744 TEC Interval_162931 chr9 13521768 13522744 + 0 NA intron (ENSMUSG00000031925.17, intron 1 of 4) protein_coding-intron (ENSMUSG00000031925.17, intron 1 of 4) 2320 ENSMUSG00000111223.1 ENSMUSG00000111223 ENSMUST00000213741 Gm47089 TEC Interval_76889 chr17 84750500 84750789 + 0 NA intron (ENSMUSG00000024120.12, intron 1 of 2) protein_coding-intron (ENSMUSG00000024120.12, intron 21 of 37) -19460 ENSMUSG00000024120.12 ENSMUSG00000024120 ENSMUST00000159222 Lrpprc protein_coding Interval_19871 chr10 110760299 110761077 + 0 NA intron (ENSMUSG00000020185.16, intron 4 of 6) protein_coding-intron (ENSMUSG00000020185.16, intron 4 of 12) 15223 ENSMUSG00000020185.16 ENSMUSG00000020185 ENSMUST00000174593 E2f7 protein_coding Interval_21679 chr11 3638948 3639148 + 0 NA TTS (ENSMUSG00000056579.18) protein_coding-TTS (ENSMUSG00000056579.18) -5606 ENSMUSG00000079889.4 ENSMUSG00000079889 ENSMUST00000116005 Gm11951 processed_pseudogene Interval_97644 chr2 141862325 141863248 + 0 NA intron (ENSMUSG00000068205.14, intron 3 of 13) protein_coding-intron (ENSMUSG00000068205.14, intron 8 of 17) 23997 ENSMUSG00000082412.1 ENSMUSG00000082412 ENSMUST00000119675 Fau-ps1 processed_pseudogene Interval_140645 chr6 120291748 120292118 + 0 NA intron (ENSMUSG00000041372.10, intron 1 of 19) protein_coding-intron (ENSMUSG00000041372.10, intron 1 of 19) 2626 ENSMUSG00000041372.10 ENSMUSG00000041372 ENSMUST00000212457 B4galnt3 protein_coding Interval_124923 chr5 60851729 60852057 + 0 NA Intergenic Intergenic -29466 ENSMUSG00000104775.1 ENSMUSG00000104775 ENSMUST00000197863 Gm8182 processed_pseudogene Interval_13437 chr10 18212967 18214157 + 0 NA TTS (ENSMUSG00000059554.12) protein_coding-TTS (ENSMUSG00000059554.12) 2773 ENSMUSG00000059554.12 ENSMUSG00000059554 ENSMUST00000052648 Ccdc28a protein_coding Interval_61573 chr15 82523821 82524155 + 0 NA Intergenic Intergenic -3761 ENSMUSG00000116490.1 ENSMUSG00000116490 ENSMUST00000229863 Gm46525 processed_pseudogene Interval_139464 chr6 100347610 100347914 + 0 NA Intergenic Intergenic -61014 ENSMUSG00000072872.3 ENSMUSG00000072872 ENSMUST00000205164 Rybp protein_coding Interval_71229 chr17 21437986 21438244 + 0 NA intron (ENSMUSG00000116771.1, intron 1 of 3) antisense-intron (ENSMUSG00000116771.1, intron 1 of 3) 12152 ENSMUSG00000116771.1 ENSMUSG00000116771 ENSMUST00000232563 Gm49691 antisense Interval_124461 chr5 48334009 48334358 + 0 NA intron (ENSMUSG00000029089.8, intron 1 of 6) protein_coding-intron (ENSMUSG00000029089.8, intron 1 of 6) 9571 ENSMUSG00000106604.1 ENSMUSG00000106604 ENSMUST00000197312 Gm42535 TEC Interval_35865 chr12 31307167 31307551 + 0 NA intron (ENSMUSG00000002900.17, intron 22 of 32) protein_coding-intron (ENSMUSG00000002900.17, intron 22 of 32) 42065 ENSMUSG00000002900.17 ENSMUSG00000002900 ENSMUST00000172134 Lamb1 protein_coding Interval_38673 chr12 80958109 80958604 + 0 NA intron (ENSMUSG00000021135.8, intron 2 of 2) protein_coding-intron (ENSMUSG00000021135.8, intron 2 of 4) 9722 ENSMUSG00000021135.8 ENSMUSG00000021135 ENSMUST00000220266 Slc10a1 protein_coding Interval_162793 chr9 9160172 9161255 + 0 NA intron (ENSMUSG00000050730.17, intron 2 of 5) protein_coding-intron (ENSMUSG00000050730.17, intron 2 of 22) -75575 ENSMUSG00000085253.3 ENSMUSG00000085253 ENSMUST00000150263 Gm16833 antisense Interval_140340 chr6 116697709 116697875 + 0 NA intron (ENSMUSG00000048108.13, intron 4 of 5) protein_coding-intron (ENSMUSG00000048108.13, intron 3 of 4) 18937 ENSMUSG00000048108.13 ENSMUSG00000048108 ENSMUST00000129255 Tmem72 protein_coding Interval_59293 chr15 50846089 50846374 + 0 NA TTS (ENSMUSG00000038679.16) protein_coding-TTS (ENSMUSG00000038679.16) 42883 ENSMUSG00000084458.1 ENSMUSG00000084458 ENSMUST00000122509 Mir1907 miRNA Interval_153119 chr7 141460933 141462205 + 0 NA promoter-TSS (ENSMUSG00000048200.12) protein_coding-promoter-TSS (ENSMUSG00000048200.12) -1542 ENSMUSG00000048200.12 ENSMUSG00000048200 ENSMUST00000116247 Cracr2b protein_coding Interval_167902 chr9 73962765 73962950 + 0 NA intron (ENSMUSG00000062151.13, intron 1 of 32) protein_coding-intron (ENSMUSG00000062151.13, intron 1 of 32) 6109 ENSMUSG00000062151.13 ENSMUSG00000062151 ENSMUST00000075245 Unc13c protein_coding Interval_95937 chr2 118554458 118555393 + 0 NA Intergenic Intergenic -9609 ENSMUSG00000040093.16 ENSMUSG00000040093 ENSMUST00000138342 Bmf protein_coding Interval_117873 chr4 126802903 126803994 + 0 NA intron (ENSMUSG00000028830.14, intron 3 of 23) protein_coding-intron (ENSMUSG00000028830.14, intron 3 of 20) -7033 ENSMUSG00000082498.1 ENSMUSG00000082498 ENSMUST00000118333 Gm12937 processed_pseudogene Interval_59077 chr15 43222593 43223432 + 0 NA Intergenic Intergenic 1908 ENSMUSG00000087905.1 ENSMUSG00000087905 ENSMUST00000157280 Gm22037 misc_RNA Interval_134880 chr6 33043143 33044150 + 0 NA TTS (ENSMUSG00000085847.1) antisense-TTS (ENSMUSG00000085847.1) -1527 ENSMUSG00000106676.1 ENSMUSG00000106676 ENSMUST00000200761 Gm42895 TEC Interval_168687 chr9 85898040 85898287 + 0 NA Intergenic Intergenic 45037 ENSMUSG00000110946.1 ENSMUSG00000110946 ENSMUST00000213921 Gm47604 lincRNA Interval_61385 chr15 81264230 81264999 + 0 NA intron (ENSMUSG00000115970.1, intron 1 of 3) lincRNA-intron (ENSMUSG00000115970.1, intron 1 of 3) -12752 ENSMUSG00000115970.1 ENSMUSG00000115970 ENSMUST00000230042 8430426J06Rik lincRNA Interval_102385 chr3 23125609 23125872 + 0 NA Intergenic Intergenic 39765 ENSMUSG00000103607.1 ENSMUSG00000103607 ENSMUST00000195835 Gm37021 lincRNA Interval_109113 chr3 135886383 135887433 + 0 NA exon (ENSMUSG00000053897.15, exon 8 of 8) protein_coding-exon (ENSMUSG00000053897.15, exon 8 of 8) 14795 ENSMUSG00000105681.1 ENSMUSG00000105681 ENSMUST00000200108 Gm43428 TEC Interval_161795 chr8 122846950 122848830 + 0 NA promoter-TSS (ENSMUSG00000031962.6) protein_coding-promoter-TSS (ENSMUSG00000031962.6) -76 ENSMUSG00000031962.6 ENSMUSG00000031962 ENSMUST00000034443 Cdh15 protein_coding Interval_75950 chr17 73540254 73541176 + 0 NA intron (ENSMUSG00000024064.14, intron 3 of 9) protein_coding-intron (ENSMUSG00000024064.14, intron 3 of 14) -22960 ENSMUSG00000117102.1 ENSMUSG00000117102 ENSMUST00000233431 AC107792.1 TEC Interval_27576 chr11 68811285 68812758 + 0 NA intron (ENSMUSG00000020900.15, intron 2 of 2) protein_coding-intron (ENSMUSG00000020900.15, intron 40 of 42) 47975 ENSMUSG00000018736.14 ENSMUSG00000018736 ENSMUST00000127469 Ndel1 protein_coding Interval_40017 chr12 100509062 100510103 + 0 NA intron (ENSMUSG00000033530.8, intron 1 of 9) protein_coding-intron (ENSMUSG00000033530.8, intron 1 of 19) -43284 ENSMUSG00000033530.8 ENSMUSG00000033530 ENSMUST00000220614 Ttc7b protein_coding Interval_75840 chr17 71733610 71733906 + 0 NA Intergenic Intergenic -15941 ENSMUSG00000089779.1 ENSMUSG00000089779 ENSMUST00000161407 Gm15641 antisense Interval_36400 chr12 43459096 43459655 + 0 NA Intergenic Intergenic 153232 ENSMUSG00000112904.1 ENSMUSG00000112904 ENSMUST00000217732 Gm47030 lincRNA Interval_133536 chr6 6207152 6208134 + 0 NA intron (ENSMUSG00000015112.15, intron 1 of 17) protein_coding-intron (ENSMUSG00000015112.15, intron 1 of 17) -33692 ENSMUSG00000015112.15 ENSMUSG00000015112 ENSMUST00000177698 Slc25a13 protein_coding Interval_163305 chr9 20740305 20741101 + 0 NA intron (ENSMUSG00000032172.8, intron 1 of 5) protein_coding-intron (ENSMUSG00000032172.8, intron 1 of 5) -13766 ENSMUSG00000032172.8 ENSMUSG00000032172 ENSMUST00000215039 Olfm2 protein_coding Interval_555 chr1 7293360 7293562 + 0 NA Intergenic Intergenic -21990 ENSMUSG00000102768.1 ENSMUSG00000102768 ENSMUST00000192649 Gm19002 processed_pseudogene Interval_43772 chr13 36282078 36283068 + 0 NA intron (ENSMUSG00000021420.13, intron 4 of 7) protein_coding-intron (ENSMUSG00000021420.13, intron 4 of 6) 30214 ENSMUSG00000114617.1 ENSMUSG00000114617 ENSMUST00000225563 Gm48766 TEC Interval_76458 chr17 80336336 80336593 + 0 NA intron (ENSMUSG00000054901.7, intron 3 of 6) protein_coding-intron (ENSMUSG00000054901.7, intron 2 of 17) 37077 ENSMUSG00000066938.1 ENSMUSG00000066938 ENSMUST00000086549 Gm10190 protein_coding Interval_70710 chr17 13742748 13743963 + 0 NA intron (ENSMUSG00000038347.15, intron 1 of 2) protein_coding-intron (ENSMUSG00000038347.15, intron 1 of 3) 16729 ENSMUSG00000038347.15 ENSMUSG00000038347 ENSMUST00000155166 Tcte2 protein_coding Interval_54122 chr14 65507131 65507325 + 0 NA Intergenic Intergenic -82068 ENSMUSG00000045731.6 ENSMUSG00000045731 ENSMUST00000224594 Pnoc protein_coding Interval_125439 chr5 67150184 67150540 + 0 NA Intergenic Intergenic 22859 ENSMUSG00000106995.1 ENSMUSG00000106995 ENSMUST00000201933 Gm33167 TEC Interval_60232 chr15 68633428 68633642 + 0 NA Intergenic Intergenic -21828 ENSMUSG00000116367.1 ENSMUSG00000116367 ENSMUST00000230783 Gm49414 processed_pseudogene Interval_26692 chr11 59756353 59756673 + 0 NA intron (ENSMUSG00000005417.17, intron 12 of 20) protein_coding-intron (ENSMUSG00000005417.17, intron 14 of 22) -4235 ENSMUSG00000005417.17 ENSMUSG00000005417 ENSMUST00000156111 Mprip protein_coding Interval_167125 chr9 65524065 65524554 + 0 NA intron (ENSMUSG00000111818.1, intron 1 of 1) processed_transcript-intron (ENSMUSG00000111818.1, intron 1 of 1) -4116 ENSMUSG00000066510.5 ENSMUSG00000066510 ENSMUST00000217646 Ankdd1a protein_coding Interval_81125 chr18 54431018 54431474 + 0 NA intron (ENSMUSG00000096982.2, intron 1 of 2) lincRNA-intron (ENSMUSG00000096982.2, intron 1 of 2) 8951 ENSMUSG00000096982.2 ENSMUSG00000096982 ENSMUST00000181269 Redrum lincRNA Interval_145971 chr7 42755213 42757560 + 0 NA Intergenic Intergenic 5972 ENSMUSG00000092238.1 ENSMUSG00000092238 ENSMUST00000173237 Gm6004 processed_pseudogene Interval_80065 chr18 37172364 37172750 + 0 NA promoter-TSS (ENSMUSG00000103456.1) antisense-promoter-TSS (ENSMUSG00000103456.1) 7 ENSMUSG00000103456.1 ENSMUSG00000103456 ENSMUST00000192936 Gm38097 antisense Interval_160382 chr8 108854779 108855006 + 0 NA intron (ENSMUSG00000038872.10, intron 9 of 15) protein_coding-intron (ENSMUSG00000038872.10, intron 3 of 9) -12670 ENSMUSG00000102989.1 ENSMUSG00000102989 ENSMUST00000195769 Gm38318 TEC Interval_52884 chr14 51838622 51840560 + 0 NA TTS (ENSMUSG00000091812.1) unprocessed_pseudogene-TTS (ENSMUSG00000091812.1) 592 ENSMUSG00000091812.1 ENSMUSG00000091812 ENSMUST00000164700 Ear-ps5 unprocessed_pseudogene Interval_71430 chr17 23699250 23700562 + 0 NA exon (ENSMUSG00000118572.1, exon 1 of 1) processed_pseudogene-exon (ENSMUSG00000118572.1, exon 1 of 1) 207 ENSMUSG00000118572.1 ENSMUSG00000118572 ENSMUST00000239094 AC122821.1 processed_pseudogene Interval_161518 chr8 120890014 120890563 + 0 NA intron (ENSMUSG00000092329.1, intron 1 of 15) protein_coding-intron (ENSMUSG00000092329.1, intron 1 of 15) 10082 ENSMUSG00000097087.1 ENSMUSG00000097087 ENSMUST00000181778 Gm26878 lincRNA Interval_53871 chr14 62982376 62982591 + 0 NA intron (ENSMUSG00000075574.2, intron 1 of 1) protein_coding-intron (ENSMUSG00000075574.2, intron 1 of 1) 2027 ENSMUSG00000075574.2 ENSMUSG00000075574 ENSMUST00000100493 Defb48 protein_coding Interval_155120 chr8 26791478 26792133 + 0 NA Intergenic Intergenic 11490 ENSMUSG00000110297.1 ENSMUSG00000110297 ENSMUST00000209789 Gm45647 processed_pseudogene Interval_75889 chr17 72797620 72798350 + 0 NA Intergenic Intergenic -39551 ENSMUSG00000039770.6 ENSMUSG00000039770 ENSMUST00000233662 Ypel5 protein_coding Interval_171323 chr9 116362255 116362441 + 0 NA Intergenic Intergenic 31180 ENSMUSG00000110752.1 ENSMUSG00000110752 ENSMUST00000217456 D730003K21Rik lincRNA Interval_127173 chr5 100819677 100821243 + 0 NA exon (ENSMUSG00000105755.1, exon 1 of 1) sense_intronic-exon (ENSMUSG00000105755.1, exon 1 of 1) 293 ENSMUSG00000105755.1 ENSMUSG00000105755 ENSMUST00000198852 Gm43514 sense_intronic Interval_3625 chr1 60076336 60077519 + 0 NA TTS (ENSMUSG00000026019.15) protein_coding-TTS (ENSMUSG00000026019.15) 8835 ENSMUSG00000026019.15 ENSMUSG00000026019 ENSMUST00000133767 Wdr12 protein_coding Interval_34103 chr11 120658896 120661444 + 0 NA exon (ENSMUSG00000042988.10, exon 1 of 11) protein_coding-exon (ENSMUSG00000042988.10, exon 1 of 11) 1005 ENSMUSG00000042988.10 ENSMUSG00000042988 ENSMUST00000150458 Notum protein_coding Interval_34020 chr11 120056996 120057214 + 0 NA Intergenic Intergenic -1996 ENSMUSG00000113114.1 ENSMUSG00000113114 ENSMUST00000223151 Gm47846 unitary_pseudogene Interval_79917 chr18 35912628 35913650 + 0 NA promoter-TSS (ENSMUSG00000118347.1) lincRNA-promoter-TSS (ENSMUSG00000118347.1) 7 ENSMUSG00000118347.1 ENSMUSG00000118347 ENSMUST00000237014 C330008A17Rik lincRNA Interval_80336 chr18 39391172 39391406 + 0 NA Intergenic Intergenic -1864 ENSMUSG00000085289.1 ENSMUSG00000085289 ENSMUST00000135378 Gm15337 antisense Interval_43111 chr13 24244953 24247197 + 0 NA intron (ENSMUSG00000021338.17, intron 2 of 5) protein_coding-intron (ENSMUSG00000021338.17, intron 2 of 37) 45730 ENSMUSG00000083409.1 ENSMUSG00000083409 ENSMUST00000119226 Gm11340 processed_pseudogene Interval_124756 chr5 53678972 53680580 + 0 NA Intergenic Intergenic 27784 ENSMUSG00000029193.7 ENSMUSG00000029193 ENSMUST00000202946 Cckar protein_coding Interval_108362 chr3 125794641 125795035 + 0 NA Intergenic Intergenic 84752 ENSMUSG00000027971.16 ENSMUSG00000027971 ENSMUST00000198101 Ndst4 protein_coding Interval_50606 chr14 16448629 16449010 + 0 NA intron (ENSMUSG00000017491.9, intron 3 of 7) protein_coding-intron (ENSMUSG00000017491.9, intron 3 of 7) 25633 ENSMUSG00000017485.11 ENSMUSG00000017485 ENSMUST00000224460 Top2b protein_coding Interval_75390 chr17 66317241 66318045 + 0 NA Intergenic Intergenic 1869 ENSMUSG00000117010.1 ENSMUSG00000117010 ENSMUST00000233050 Gm49933 processed_pseudogene Interval_94522 chr2 91904713 91905530 + 0 NA intron (ENSMUSG00000040506.16, intron 15 of 17) protein_coding-intron (ENSMUSG00000040506.16, intron 14 of 16) 15807 ENSMUSG00000075036.1 ENSMUSG00000075036 ENSMUST00000099710 Gm10805 pseudogene Interval_168699 chr9 86056965 86057201 + 0 NA Intergenic Intergenic -113883 ENSMUSG00000110946.1 ENSMUSG00000110946 ENSMUST00000213921 Gm47604 lincRNA Interval_15173 chr10 43081279 43082108 + 0 NA intron (ENSMUSG00000038248.8, intron 4 of 6) protein_coding-intron (ENSMUSG00000038248.8, intron 4 of 6) 46700 ENSMUSG00000111171.1 ENSMUSG00000111171 ENSMUST00000213469 Gm47815 antisense Interval_151239 chr7 120043960 120044190 + 0 NA intron (ENSMUSG00000052273.4, intron 23 of 60) protein_coding-intron (ENSMUSG00000052273.4, intron 23 of 60) 51205 ENSMUSG00000052273.4 ENSMUSG00000052273 ENSMUST00000213993 Dnah3 protein_coding Interval_31644 chr11 101952187 101952898 + 0 NA intron (ENSMUSG00000071818.9, intron 1 of 3) antisense-intron (ENSMUSG00000071818.9, intron 1 of 3) 121 ENSMUSG00000071818.9 ENSMUSG00000071818 ENSMUST00000123249 4930417O22Rik antisense Interval_120137 chr4 142909235 142909811 + 0 NA intron (ENSMUSG00000110067.2, intron 1 of 1) protein_coding-intron (ENSMUSG00000110067.2, intron 1 of 2) 118715 ENSMUSG00000103678.1 ENSMUSG00000103678 ENSMUST00000193751 Gm37624 TEC Interval_87776 chr19 55792468 55793304 + 0 NA intron (ENSMUSG00000024985.20, intron 4 of 14) protein_coding-intron (ENSMUSG00000024985.20, intron 3 of 11) -48786 ENSMUSG00000099746.1 ENSMUSG00000099746 ENSMUST00000190974 Ppnr sense_intronic Interval_43423 chr13 30651969 30652417 + 0 NA Intergenic Intergenic -7879 ENSMUSG00000069255.13 ENSMUSG00000069255 ENSMUST00000095914 Dusp22 protein_coding Interval_136643 chr6 56909062 56909738 + 0 NA intron (ENSMUSG00000029780.14, intron 1 of 9) protein_coding-intron (ENSMUSG00000029780.14, intron 1 of 8) -2818 ENSMUSG00000108260.1 ENSMUSG00000108260 ENSMUST00000204973 Gm3793 TEC Interval_82030 chr18 67275714 67276191 + 0 NA Intergenic Intergenic -30511 ENSMUSG00000062526.4 ENSMUSG00000062526 ENSMUST00000237631 Mppe1 protein_coding Interval_108864 chr3 132819248 132819470 + 0 NA intron (ENSMUSG00000028030.12, intron 3 of 3) protein_coding-intron (ENSMUSG00000028030.12, intron 25 of 25) 13106 ENSMUSG00000105691.1 ENSMUSG00000105691 ENSMUST00000196989 Gm42876 TEC Interval_34072 chr11 120359452 120359626 + 0 NA Intergenic Intergenic -7003 ENSMUSG00000025380.2 ENSMUSG00000025380 ENSMUST00000130476 Fscn2 protein_coding Interval_25479 chr11 48850385 48850689 + 0 NA TTS (ENSMUSG00000040350.16) protein_coding-TTS (ENSMUSG00000040350.16) 2956 ENSMUSG00000086245.1 ENSMUSG00000086245 ENSMUST00000156882 Gm16170 antisense Interval_137226 chr6 70389869 70390134 + 0 NA Intergenic Intergenic -2749 ENSMUSG00000076591.3 ENSMUSG00000076591 ENSMUST00000195945 Igkv8-16 IG_V_gene Interval_92261 chr2 57394695 57395762 + 0 NA Intergenic Intergenic 30481 ENSMUSG00000084338.5 ENSMUSG00000084338 ENSMUST00000121893 Gm13531 processed_pseudogene Interval_27793 chr11 70026726 70027112 + 0 NA promoter-TSS (ENSMUSG00000020886.17) protein_coding-promoter-TSS (ENSMUSG00000020886.17) -80 ENSMUSG00000020886.17 ENSMUSG00000020886 ENSMUST00000131497 Dlg4 protein_coding Interval_62822 chr15 97235297 97236084 + 0 NA Intergenic Intergenic 11432 ENSMUSG00000048218.6 ENSMUSG00000048218 ENSMUST00000053106 Amigo2 protein_coding Interval_72064 chr17 27799622 27801677 + 0 NA intron (ENSMUSG00000056692.13, intron 1 of 4) protein_coding-intron (ENSMUSG00000056692.13, intron 1 of 3) 16270 ENSMUSG00000080731.2 ENSMUSG00000080731 ENSMUST00000121414 Rps2-ps9 transcribed_processed_pseudogene Interval_119439 chr4 137638536 137640106 + 0 NA intron (ENSMUSG00000043411.15, intron 5 of 7) protein_coding-intron (ENSMUSG00000043411.15, intron 23 of 27) -10980 ENSMUSG00000043411.15 ENSMUSG00000043411 ENSMUST00000125151 Usp48 protein_coding Interval_111819 chr4 31394962 31396095 + 0 NA Intergenic Intergenic 15056 ENSMUSG00000082254.1 ENSMUSG00000082254 ENSMUST00000118967 Gm11922 processed_pseudogene Interval_120194 chr4 144046208 144047146 + 0 NA Intergenic Intergenic -4199 ENSMUSG00000095987.1 ENSMUSG00000095987 ENSMUST00000119651 Gm13104 processed_pseudogene Interval_84512 chr19 12001508 12002891 + 0 NA Intergenic Intergenic -17976 ENSMUSG00000109030.1 ENSMUSG00000109030 ENSMUST00000208900 Olfr1421-ps1 unprocessed_pseudogene Interval_387 chr1 4810451 4810685 + 0 NA intron (ENSMUSG00000025903.14, intron 2 of 7) protein_coding-intron (ENSMUSG00000025903.14, intron 2 of 8) 2676 ENSMUSG00000104217.1 ENSMUSG00000104217 ENSMUST00000155020 Gm37988 protein_coding Interval_44899 chr13 49535679 49536469 + 0 NA intron (ENSMUSG00000021391.10, intron 5 of 7) protein_coding-intron (ENSMUSG00000021391.10, intron 5 of 7) -8369 ENSMUSG00000021388.14 ENSMUSG00000021388 ENSMUST00000021820 Aspn protein_coding Interval_49249 chr13 109806619 109807281 + 0 NA intron (ENSMUSG00000021699.17, intron 6 of 15) protein_coding-intron (ENSMUSG00000021699.17, intron 5 of 14) -96859 ENSMUSG00000084651.1 ENSMUSG00000084651 ENSMUST00000122702 Mir1904 miRNA Interval_7085 chr1 125581432 125581885 + 0 NA intron (ENSMUSG00000026342.10, intron 10 of 15) protein_coding-intron (ENSMUSG00000026342.10, intron 10 of 15) 21063 ENSMUSG00000026342.10 ENSMUSG00000026342 ENSMUST00000189443 Slc35f5 protein_coding Interval_109429 chr3 142294958 142295498 + 0 NA intron (ENSMUSG00000028273.15, intron 6 of 14) protein_coding-intron (ENSMUSG00000028273.15, intron 7 of 12) 8751 ENSMUSG00000028273.15 ENSMUSG00000028273 ENSMUST00000058626 Pdlim5 protein_coding Interval_134246 chr6 23557697 23558069 + 0 NA intron (ENSMUSG00000017978.18, intron 7 of 29) protein_coding-intron (ENSMUSG00000017978.18, intron 6 of 29) 38137 ENSMUSG00000098877.1 ENSMUSG00000098877 ENSMUST00000185172 Gm27959 rRNA Interval_77098 chr17 86525594 86525890 + 0 NA intron (ENSMUSG00000045038.14, intron 10 of 14) protein_coding-intron (ENSMUSG00000045038.14, intron 11 of 15) -20510 ENSMUSG00000071036.2 ENSMUSG00000071036 ENSMUST00000095186 Gm10309 protein_coding Interval_98936 chr2 156133860 156134608 + 0 NA intron (ENSMUSG00000027618.17, intron 5 of 12) protein_coding-intron (ENSMUSG00000027618.17, intron 5 of 12) 5575 ENSMUSG00000027618.17 ENSMUSG00000027618 ENSMUST00000109600 Nfs1 protein_coding Interval_22233 chr11 7423119 7424444 + 0 NA Intergenic Intergenic -133407 ENSMUSG00000087637.1 ENSMUSG00000087637 ENSMUST00000149481 Gm11986 lincRNA Interval_95424 chr2 109148905 109149243 + 0 NA promoter-TSS (ENSMUSG00000076987.1) miRNA-promoter-TSS (ENSMUSG00000076987.1) -376 ENSMUSG00000076987.1 ENSMUSG00000076987 ENSMUST00000103799 Gm24115 miRNA Interval_124716 chr5 53531960 53532198 + 0 NA intron (ENSMUSG00000039191.12, intron 1 of 6) protein_coding-intron (ENSMUSG00000039191.12, intron 1 of 6) -9348 ENSMUSG00000106807.1 ENSMUSG00000106807 ENSMUST00000200950 Gm10441 antisense Interval_86780 chr19 43847063 43848437 + 0 NA TTS (ENSMUSG00000025195.9) protein_coding-TTS (ENSMUSG00000025195.9) 9601 ENSMUSG00000088490.1 ENSMUSG00000088490 ENSMUST00000157865 Gm24400 snRNA Interval_143391 chr7 6322560 6322860 + 0 NA TTS (ENSMUSG00000030443.16) protein_coding-TTS (ENSMUSG00000030443.16) 6553 ENSMUSG00000030443.16 ENSMUSG00000030443 ENSMUST00000127658 Zfp583 protein_coding Interval_2002 chr1 35839385 35840014 + 0 NA Intergenic Intergenic 32725 ENSMUSG00000101714.1 ENSMUSG00000101714 ENSMUST00000187528 Gm28415 lincRNA Interval_56030 chr14 104824415 104826053 + 0 NA intron (ENSMUSG00000115432.1, intron 3 of 4) lincRNA-intron (ENSMUSG00000115432.1, intron 2 of 4) -146193 ENSMUSG00000077425.1 ENSMUSG00000077425 ENSMUST00000104237 Gm24280 snoRNA Interval_22704 chr11 13502537 13502705 + 0 NA Intergenic Intergenic 504955 ENSMUSG00000084055.1 ENSMUSG00000084055 ENSMUST00000117869 Gm12004 processed_pseudogene Interval_110166 chr3 153917014 153917973 + 0 NA TTS (ENSMUSG00000105820.1) antisense-TTS (ENSMUSG00000105820.1) 4398 ENSMUSG00000105820.1 ENSMUSG00000105820 ENSMUST00000197294 Gm43400 antisense Interval_22850 chr11 16686091 16686518 + 0 NA Intergenic Intergenic -40766 ENSMUSG00000076337.1 ENSMUSG00000076337 ENSMUST00000102382 Gm24714 miRNA Interval_86816 chr19 44057814 44058016 + 0 NA intron (ENSMUSG00000025198.16, intron 6 of 6) protein_coding-intron (ENSMUSG00000025198.16, intron 6 of 11) 9768 ENSMUSG00000025198.16 ENSMUSG00000025198 ENSMUST00000169092 Erlin1 protein_coding Interval_104626 chr3 68935036 68936084 + 0 NA intron (ENSMUSG00000027778.15, intron 11 of 19) protein_coding-intron (ENSMUSG00000027778.15, intron 10 of 18) -18237 ENSMUSG00000111756.1 ENSMUSG00000111756 ENSMUST00000217619 Gm48183 TEC Interval_25201 chr11 45262130 45262338 + 0 NA Intergenic Intergenic 18720 ENSMUSG00000080981.1 ENSMUSG00000080981 ENSMUST00000121454 Gm12161 processed_pseudogene Interval_152595 chr7 134945421 134947038 + 0 NA intron (ENSMUSG00000058325.6, intron 27 of 29) protein_coding-intron (ENSMUSG00000058325.6, intron 27 of 51) -7951 ENSMUSG00000073805.5 ENSMUSG00000073805 ENSMUST00000210826 Insyn2a protein_coding Interval_108567 chr3 129124337 129124555 + 0 NA Intergenic Intergenic -53902 ENSMUSG00000099640.1 ENSMUSG00000099640 ENSMUST00000188986 Gm28543 lincRNA Interval_125139 chr5 64819534 64820107 + 0 NA TTS (ENSMUSG00000029178.14) protein_coding-TTS (ENSMUSG00000029178.14) 15806 ENSMUSG00000106205.1 ENSMUSG00000106205 ENSMUST00000198074 C230096K16Rik TEC Interval_104476 chr3 66236365 66236913 + 0 NA intron (ENSMUSG00000027831.9, intron 4 of 13) protein_coding-intron (ENSMUSG00000027831.9, intron 4 of 13) 16394 ENSMUSG00000027832.5 ENSMUSG00000027832 ENSMUST00000182521 Ptx3 protein_coding Interval_112262 chr4 39296732 39297009 + 0 NA Intergenic Intergenic 1407 ENSMUSG00000077738.1 ENSMUSG00000077738 ENSMUST00000104550 Gm23607 snoRNA Interval_71793 chr17 26122866 26124205 + 0 NA promoter-TSS (ENSMUSG00000024181.9) protein_coding-promoter-TSS (ENSMUSG00000024181.9) 15 ENSMUSG00000024181.9 ENSMUSG00000024181 ENSMUST00000123132 Mrpl28 protein_coding Interval_160706 chr8 111731077 111732502 + 0 NA intron (ENSMUSG00000031955.10, intron 1 of 6) protein_coding-intron (ENSMUSG00000031955.10, intron 1 of 6) 347 ENSMUSG00000031955.10 ENSMUSG00000031955 ENSMUST00000212147 Bcar1 protein_coding Interval_27518 chr11 68359951 68360791 + 0 NA intron (ENSMUSG00000020902.12, intron 3 of 7) protein_coding-intron (ENSMUSG00000020902.12, intron 2 of 6) 26641 ENSMUSG00000020902.12 ENSMUSG00000020902 ENSMUST00000135141 Ntn1 protein_coding Interval_148686 chr7 84142953 84143826 + 0 NA intron (ENSMUSG00000038459.10, intron 1 of 2) protein_coding-intron (ENSMUSG00000038459.10, intron 1 of 2) 8281 ENSMUSG00000038459.10 ENSMUSG00000038459 ENSMUST00000208271 Abhd17c protein_coding Interval_68035 chr16 64449798 64450768 + 0 NA Intergenic Intergenic 152125 ENSMUSG00000068167.6 ENSMUSG00000068167 ENSMUST00000089279 Csnka2ip protein_coding Interval_71068 chr17 17623868 17625730 + 0 NA promoter-TSS (ENSMUSG00000023845.7) protein_coding-promoter-TSS (ENSMUSG00000023845.7) -158 ENSMUSG00000023845.7 ENSMUSG00000023845 ENSMUST00000231666 Lnpep protein_coding Interval_30865 chr11 96963245 96964270 + 0 NA exon (ENSMUSG00000078700.10, exon 6 of 6) processed_transcript-exon (ENSMUSG00000078700.10, exon 6 of 6) 13954 ENSMUSG00000018678.13 ENSMUSG00000018678 ENSMUST00000062652 Sp2 protein_coding Interval_38239 chr12 76582752 76583777 + 0 NA TTS (ENSMUSG00000021061.15) protein_coding-TTS (ENSMUSG00000021061.15) 822 ENSMUSG00000021061.15 ENSMUSG00000021061 ENSMUST00000166101 Sptb protein_coding Interval_77456 chr17 88963966 88964188 + 0 NA Intergenic Intergenic -107455 ENSMUSG00000117566.1 ENSMUSG00000117566 ENSMUST00000234561 Gm9407 processed_pseudogene Interval_112031 chr4 33343853 33344096 + 0 NA intron (ENSMUSG00000028274.17, intron 3 of 4) protein_coding-intron (ENSMUSG00000028274.17, intron 8 of 15) 19076 ENSMUSG00000028274.17 ENSMUSG00000028274 ENSMUST00000146870 Rngtt protein_coding Interval_87786 chr19 55867916 55868503 + 0 NA intron (ENSMUSG00000024985.20, intron 5 of 7) protein_coding-intron (ENSMUSG00000024985.20, intron 4 of 11) 26537 ENSMUSG00000099746.1 ENSMUSG00000099746 ENSMUST00000190974 Ppnr sense_intronic Interval_174257 chrX 142226809 142228888 + 0 NA promoter-TSS (ENSMUSG00000042271.13) protein_coding-promoter-TSS (ENSMUSG00000042271.13) -379 ENSMUSG00000042271.13 ENSMUSG00000042271 ENSMUST00000112913 Nxt2 protein_coding Interval_137507 chr6 72807890 72809104 + 0 NA Intergenic Intergenic -56583 ENSMUSG00000104501.1 ENSMUSG00000104501 ENSMUST00000193564 Gm37736 TEC Interval_98123 chr2 148443008 148443605 + 0 NA exon (ENSMUSG00000027435.8, exon 1 of 2) protein_coding-exon (ENSMUSG00000027435.8, exon 1 of 2) 257 ENSMUSG00000027435.8 ENSMUSG00000027435 ENSMUST00000099269 Cd93 protein_coding Interval_74426 chr17 50237068 50238492 + 0 NA Intergenic Intergenic -1224 ENSMUSG00000117009.1 ENSMUSG00000117009 ENSMUST00000232953 Gm41597 lincRNA Interval_83748 chr19 4375104 4375349 + 0 NA intron (ENSMUSG00000054611.17, intron 2 of 9) protein_coding-intron (ENSMUSG00000054611.17, intron 2 of 20) -46815 ENSMUSG00000054611.17 ENSMUSG00000054611 ENSMUST00000176495 Kdm2a protein_coding Interval_108654 chr3 129830551 129831724 + 0 NA promoter-TSS (ENSMUSG00000028010.16) protein_coding-promoter-TSS (ENSMUSG00000028010.16) -205 ENSMUSG00000028010.16 ENSMUSG00000028010 ENSMUST00000149071 Gar1 protein_coding Interval_46462 chr13 66348787 66349873 + 0 NA intron (ENSMUSG00000114616.1, intron 2 of 2) lincRNA-intron (ENSMUSG00000114616.1, intron 2 of 2) -6395 ENSMUSG00000114729.1 ENSMUSG00000114729 ENSMUST00000224620 C330022B21Rik processed_pseudogene Interval_172703 chrX 43679236 43680796 + 0 NA Intergenic Intergenic -30375 ENSMUSG00000081856.1 ENSMUSG00000081856 ENSMUST00000119122 Gm14580 processed_pseudogene Interval_96811 chr2 128466579 128467370 + 0 NA intron (ENSMUSG00000074813.14, intron 2 of 2) lincRNA-intron (ENSMUSG00000074813.14, intron 2 of 2) 33251 ENSMUSG00000114963.1 ENSMUSG00000114963 ENSMUST00000224297 Gm29010 lincRNA Interval_47740 chr13 92144867 92145128 + 0 NA Intergenic Intergenic -13341 ENSMUSG00000021708.17 ENSMUSG00000021708 ENSMUST00000146492 Rasgrf2 protein_coding Interval_98296 chr2 150859626 150859840 + 0 NA intron (ENSMUSG00000032046.15, intron 1 of 12) protein_coding-intron (ENSMUSG00000032046.15, intron 1 of 12) -17163 ENSMUSG00000032046.15 ENSMUSG00000032046 ENSMUST00000129228 Abhd12 protein_coding Interval_78543 chr18 14616939 14617205 + 0 NA Intergenic Intergenic 20334 ENSMUSG00000037013.17 ENSMUSG00000037013 ENSMUST00000234544 Ss18 protein_coding Interval_68371 chr16 74763129 74763503 + 0 NA Intergenic Intergenic 112622 ENSMUSG00000116881.1 ENSMUSG00000116881 ENSMUST00000232678 Gm49674 TEC Interval_50108 chr14 8044485 8046052 + 0 NA intron (ENSMUSG00000025277.14, intron 4 of 7) protein_coding-intron (ENSMUSG00000025277.14, intron 5 of 8) 42349 ENSMUSG00000025277.14 ENSMUSG00000025277 ENSMUST00000026313 Abhd6 protein_coding Interval_162261 chr8 126506986 126507219 + 0 NA Intergenic Intergenic -30690 ENSMUSG00000074026.3 ENSMUSG00000074026 ENSMUST00000098307 Gm6091 processed_pseudogene Interval_130282 chr5 125392717 125394456 + 0 NA Intergenic Intergenic -3384 ENSMUSG00000008348.9 ENSMUSG00000008348 ENSMUST00000108707 Ubc protein_coding Interval_38084 chr12 75564207 75565355 + 0 NA intron (ENSMUSG00000021051.10, intron 2 of 12) protein_coding-intron (ENSMUSG00000021051.10, intron 2 of 13) -15084 ENSMUSG00000112459.1 ENSMUSG00000112459 ENSMUST00000219909 Gm47689 antisense Interval_166225 chr9 57610675 57611109 + 0 NA intron (ENSMUSG00000056271.13, intron 9 of 12) protein_coding-intron (ENSMUSG00000056271.13, intron 9 of 10) -5814 ENSMUSG00000039714.9 ENSMUSG00000039714 ENSMUST00000215487 Cplx3 protein_coding Interval_64750 chr16 15078772 15079994 + 0 NA Intergenic Intergenic 79061 ENSMUSG00000116317.1 ENSMUSG00000116317 ENSMUST00000230174 Gm49536 processed_pseudogene Interval_32373 chr11 107206732 107207097 + 0 NA TTS (ENSMUSG00000040430.18) protein_coding-TTS (ENSMUSG00000040430.18) 15820 ENSMUSG00000081360.1 ENSMUSG00000081360 ENSMUST00000119942 Gm11718 processed_pseudogene Interval_72379 chr17 29489788 29493052 + 0 NA promoter-TSS (ENSMUSG00000024014.8) protein_coding-promoter-TSS (ENSMUSG00000024014.8) -1617 ENSMUSG00000024014.8 ENSMUSG00000024014 ENSMUST00000234270 Pim1 protein_coding Interval_94767 chr2 94144950 94146208 + 0 NA intron (ENSMUSG00000027195.10, intron 1 of 2) protein_coding-intron (ENSMUSG00000027195.10, intron 1 of 10) 38551 ENSMUSG00000093033.1 ENSMUSG00000093033 ENSMUST00000175292 Gm23630 miRNA Interval_45714 chr13 57231958 57233411 + 0 NA Intergenic Intergenic -7163 ENSMUSG00000114363.1 ENSMUSG00000114363 ENSMUST00000225562 Gm48174 processed_pseudogene Interval_81972 chr18 66521843 66522064 + 0 NA Intergenic Intergenic -4601 ENSMUSG00000117918.1 ENSMUSG00000117918 ENSMUST00000236080 Gm50157 processed_pseudogene Interval_145663 chr7 37005683 37005894 + 0 NA Intergenic Intergenic 122904 ENSMUSG00000101342.1 ENSMUSG00000101342 ENSMUST00000190381 Gm28078 lincRNA Interval_123849 chr5 35939962 35940737 + 0 NA intron (ENSMUSG00000029094.12, intron 3 of 14) protein_coding-intron (ENSMUSG00000029094.12, intron 3 of 16) 22452 ENSMUSG00000082692.2 ENSMUSG00000082692 ENSMUST00000119066 H2af-ps processed_pseudogene Interval_68134 chr16 65561723 65563182 + 0 NA promoter-TSS (ENSMUSG00000004843.7) protein_coding-promoter-TSS (ENSMUSG00000004843.7) 68 ENSMUSG00000004843.7 ENSMUSG00000004843 ENSMUST00000004965 Chmp2b protein_coding Interval_84269 chr19 9121818 9122529 + 0 NA intron (ENSMUSG00000024654.8, intron 2 of 6) protein_coding-intron (ENSMUSG00000024654.8, intron 2 of 6) -12984 ENSMUSG00000024658.7 ENSMUSG00000024658 ENSMUST00000142025 Gm9750 antisense Interval_140163 chr6 114937515 114937934 + 0 NA intron (ENSMUSG00000030315.15, intron 2 of 5) protein_coding-intron (ENSMUSG00000030315.15, intron 2 of 4) -15908 ENSMUSG00000030315.15 ENSMUSG00000030315 ENSMUST00000204693 Vgll4 protein_coding Interval_53456 chr14 57650892 57651569 + 0 NA intron (ENSMUSG00000114942.1, intron 6 of 8) protein_coding-intron (ENSMUSG00000021952.16, intron 1 of 22) 14200 ENSMUSG00000021952.16 ENSMUSG00000021952 ENSMUST00000173638 Xpo4 protein_coding Interval_111281 chr4 17026631 17027125 + 0 NA Intergenic Intergenic 6782 ENSMUSG00000082994.1 ENSMUSG00000082994 ENSMUST00000121207 Gm11848 processed_pseudogene Interval_159158 chr8 91190823 91191463 + 0 NA intron (ENSMUSG00000031667.16, intron 1 of 1) protein_coding-intron (ENSMUSG00000031667.16, intron 1 of 3) -5960 ENSMUSG00000089148.1 ENSMUSG00000089148 ENSMUST00000158523 Gm23408 misc_RNA Interval_90667 chr2 31772822 31773330 + 0 NA intron (ENSMUSG00000026842.16, intron 1 of 2) protein_coding-intron (ENSMUSG00000026842.16, intron 1 of 10) 37504 ENSMUSG00000043102.2 ENSMUSG00000043102 ENSMUST00000057407 Qrfp protein_coding Interval_79068 chr18 24296610 24297656 + 0 NA Intergenic Intergenic 39755 ENSMUSG00000091363.1 ENSMUSG00000091363 ENSMUST00000163185 Gm7701 processed_pseudogene Interval_141159 chr6 125328260 125328889 + 0 NA intron (ENSMUSG00000030340.16, intron 2 of 12) protein_coding-intron (ENSMUSG00000030340.16, intron 1 of 11) 7053 ENSMUSG00000030340.16 ENSMUSG00000030340 ENSMUST00000177329 Scnn1a protein_coding Interval_138609 chr6 90408391 90409283 + 0 NA intron (ENSMUSG00000048794.14, intron 13 of 16) protein_coding-intron (ENSMUSG00000048794.14, intron 11 of 14) 19576 ENSMUSG00000048794.14 ENSMUSG00000048794 ENSMUST00000128124 Cfap100 protein_coding Interval_57711 chr15 16427169 16427456 + 0 NA Intergenic Intergenic 69500 ENSMUSG00000115614.1 ENSMUSG00000115614 ENSMUST00000227529 Gm41276 lincRNA Interval_129735 chr5 122037590 122037891 + 0 NA intron (ENSMUSG00000042589.18, intron 1 of 6) protein_coding-intron (ENSMUSG00000042589.18, intron 2 of 22) -10642 ENSMUSG00000087386.1 ENSMUSG00000087386 ENSMUST00000135544 Gm15637 antisense Interval_100526 chr2 169918577 169919720 + 0 NA intron (ENSMUSG00000047907.11, intron 1 of 1) protein_coding-intron (ENSMUSG00000047907.11, intron 1 of 1) 34255 ENSMUSG00000047907.11 ENSMUSG00000047907 ENSMUST00000140699 Tshz2 protein_coding Interval_42535 chr13 14670566 14670770 + 0 NA intron (ENSMUSG00000015671.11, intron 6 of 6) protein_coding-intron (ENSMUSG00000015671.11, intron 6 of 6) 40391 ENSMUSG00000039182.6 ENSMUSG00000039182 ENSMUST00000222052 AW209491 protein_coding Interval_100095 chr2 167048242 167049386 + 0 NA TTS (ENSMUSG00000039501.14) protein_coding-TTS (ENSMUSG00000039501.14) 11611 ENSMUSG00000039501.14 ENSMUSG00000039501 ENSMUST00000135967 Znfx1 protein_coding Interval_27704 chr11 69565628 69566340 + 0 NA intron (ENSMUSG00000041346.11, intron 3 of 9) protein_coding-intron (ENSMUSG00000041346.11, intron 3 of 9) -2062 ENSMUSG00000041346.11 ENSMUSG00000041346 ENSMUST00000132548 Wrap53 protein_coding Interval_2181 chr1 36894299 36895608 + 0 NA intron (ENSMUSG00000026116.11, intron 1 of 5) protein_coding-intron (ENSMUSG00000026116.11, intron 1 of 40) 21586 ENSMUSG00000102930.1 ENSMUSG00000102930 ENSMUST00000194317 Gm38115 sense_intronic Interval_128832 chr5 115498502 115500549 + 0 NA Intergenic Intergenic -7070 ENSMUSG00000081282.2 ENSMUSG00000081282 ENSMUST00000121159 Gm13836 processed_pseudogene Interval_72035 chr17 27665625 27665842 + 0 NA intron (ENSMUSG00000040276.15, intron 1 of 9) protein_coding-intron (ENSMUSG00000040276.15, intron 1 of 9) 10145 ENSMUSG00000040276.15 ENSMUSG00000040276 ENSMUST00000231854 Pacsin1 protein_coding Interval_132715 chr5 147344160 147344368 + 0 NA intron (ENSMUSG00000042817.15, intron 19 of 23) protein_coding-intron (ENSMUSG00000042817.15, intron 19 of 23) -17930 ENSMUSG00000106939.1 ENSMUSG00000106939 ENSMUST00000201667 Gm29778 processed_pseudogene Interval_84423 chr19 10808865 10810335 + 0 NA intron (ENSMUSG00000024670.17, intron 1 of 5) protein_coding-intron (ENSMUSG00000024670.17, intron 1 of 11) 20326 ENSMUSG00000024670.17 ENSMUSG00000024670 ENSMUST00000236355 Cd6 protein_coding Interval_4806 chr1 79450080 79450791 + 0 NA Intergenic Intergenic -10393 ENSMUSG00000050711.7 ENSMUSG00000050711 ENSMUST00000049972 Scg2 protein_coding Interval_119096 chr4 135525065 135525955 + 0 NA exon (ENSMUSG00000028801.14, exon 6 of 9) protein_coding-exon (ENSMUSG00000028801.14, exon 6 of 9) -13031 ENSMUSG00000080474.1 ENSMUSG00000080474 ENSMUST00000116824 Gm25317 miRNA Interval_49352 chr13 111421600 111422449 + 0 NA Intergenic Intergenic 31399 ENSMUSG00000032745.18 ENSMUSG00000032745 ENSMUST00000129638 Gpbp1 protein_coding Interval_88627 chr2 7365891 7366449 + 0 NA intron (ENSMUSG00000002107.18, intron 1 of 11) protein_coding-intron (ENSMUSG00000002107.18, intron 1 of 15) 16073 ENSMUSG00000077396.1 ENSMUSG00000077396 ENSMUST00000104208 Gm24340 snRNA Interval_83428 chr18 85278230 85278589 + 0 NA Intergenic Intergenic 206573 ENSMUSG00000118198.1 ENSMUSG00000118198 ENSMUST00000237500 Gm50370 lincRNA Interval_66508 chr16 34635038 34635242 + 0 NA Intergenic Intergenic -31177 ENSMUSG00000022832.11 ENSMUSG00000022832 ENSMUST00000231612 Ropn1 protein_coding Interval_76367 chr17 79625148 79626222 + 0 NA promoter-TSS (ENSMUSG00000036368.8) protein_coding-promoter-TSS (ENSMUSG00000036368.8) -46715 ENSMUSG00000036368.8 ENSMUSG00000036368 ENSMUST00000224097 Rmdn2 protein_coding Interval_50896 chr14 20616609 20617126 + 0 NA intron (ENSMUSG00000034235.17, intron 1 of 20) protein_coding-intron (ENSMUSG00000034235.17, intron 1 of 20) -11537 ENSMUSG00000034235.17 ENSMUSG00000034235 ENSMUST00000127342 Usp54 protein_coding Interval_32923 chr11 113147161 113147884 + 0 NA intron (ENSMUSG00000087259.7, intron 1 of 3) lincRNA-intron (ENSMUSG00000087259.7, intron 1 of 2) 25555 ENSMUSG00000087259.7 ENSMUSG00000087259 ENSMUST00000150712 2610035D17Rik lincRNA Interval_130306 chr5 125531397 125533525 + 0 NA promoter-TSS (ENSMUSG00000070498.3) protein_coding-promoter-TSS (ENSMUSG00000070498.3) 687 ENSMUSG00000070498.3 ENSMUSG00000070498 ENSMUST00000184422 Tmem132b protein_coding Interval_136565 chr6 55738089 55739325 + 0 NA Intergenic Intergenic 54136 ENSMUSG00000108063.1 ENSMUSG00000108063 ENSMUST00000203099 Gm3279 lincRNA Interval_128987 chr5 116461788 116462656 + 0 NA TTS (ENSMUSG00000086219.7) antisense-TTS (ENSMUSG00000086219.7) -4738 ENSMUSG00000107021.1 ENSMUSG00000107021 ENSMUST00000201273 Gm42853 TEC Interval_39970 chr12 100159175 100160000 + 0 NA promoter-TSS (ENSMUSG00000021179.8) protein_coding-promoter-TSS (ENSMUSG00000021179.8) -27424 ENSMUSG00000113335.1 ENSMUSG00000113335 ENSMUST00000220866 Gm48296 TEC Interval_22818 chr11 16323340 16324651 + 0 NA intron (ENSMUSG00000048834.16, intron 4 of 6) protein_coding-intron (ENSMUSG00000048834.16, intron 4 of 6) 65932 ENSMUSG00000048834.16 ENSMUSG00000048834 ENSMUST00000207256 Vstm2a protein_coding Interval_62261 chr15 89279041 89279301 + 0 NA intron (ENSMUSG00000036561.9, intron 15 of 23) protein_coding-intron (ENSMUSG00000036561.9, intron 12 of 20) 14639 ENSMUSG00000036529.17 ENSMUSG00000036529 ENSMUST00000146637 Sbf1 protein_coding Interval_74131 chr17 46682660 46683735 + 0 NA TTS (ENSMUSG00000002768.8) protein_coding-TTS (ENSMUSG00000002768.8) -2394 ENSMUSG00000063576.12 ENSMUSG00000063576 ENSMUST00000233524 Klhdc3 protein_coding Interval_47994 chr13 94923113 94924344 + 0 NA Intergenic Intergenic 41128 ENSMUSG00000021685.11 ENSMUSG00000021685 ENSMUST00000184985 Otp protein_coding Interval_20386 chr10 117229547 117230709 + 0 NA Intergenic Intergenic 5539 ENSMUSG00000112462.1 ENSMUSG00000112462 ENSMUST00000218027 Gm48772 bidirectional_promoter_lncRNA Interval_117783 chr4 126201816 126203286 + 0 NA promoter-TSS (ENSMUSG00000043962.16) protein_coding-promoter-TSS (ENSMUSG00000043962.16) -1274 ENSMUSG00000084504.1 ENSMUSG00000084504 ENSMUST00000122555 Gm25323 snRNA Interval_22082 chr11 6222139 6223680 + 0 NA intron (ENSMUSG00000020447.5, intron 8 of 18) protein_coding-intron (ENSMUSG00000020447.5, intron 8 of 18) 7234 ENSMUSG00000020447.5 ENSMUSG00000020447 ENSMUST00000004505 Npc1l1 protein_coding Interval_61902 chr15 85042385 85043358 + 0 NA exon (ENSMUSG00000022434.8, exon 1 of 9) protein_coding-exon (ENSMUSG00000022434.8, exon 1 of 9) 5684 ENSMUSG00000022434.8 ENSMUSG00000022434 ENSMUST00000229691 Fam118a protein_coding Interval_114129 chr4 63883960 63884263 + 0 NA Intergenic Intergenic 11988 ENSMUSG00000084345.3 ENSMUSG00000084345 ENSMUST00000120241 Rpl17-ps4 processed_pseudogene Interval_151394 chr7 122066564 122068017 + 0 NA promoter-TSS (ENSMUSG00000030871.11) protein_coding-promoter-TSS (ENSMUSG00000030871.11) -279 ENSMUSG00000030871.11 ENSMUSG00000030871 ENSMUST00000033159 Ears2 protein_coding Interval_17326 chr10 75892512 75893908 + 0 NA promoter-TSS (ENSMUSG00000009092.5) protein_coding-promoter-TSS (ENSMUSG00000009092.5) -1364 ENSMUSG00000009092.5 ENSMUSG00000009092 ENSMUST00000220190 Derl3 protein_coding Interval_162090 chr8 125030988 125031833 + 0 NA TTS (ENSMUSG00000056820.7) protein_coding-TTS (ENSMUSG00000056820.7) -12239 ENSMUSG00000110683.1 ENSMUSG00000110683 ENSMUST00000212423 Gm45874 processed_pseudogene Interval_125096 chr5 64410000 64411179 + 0 NA Intergenic Intergenic -23366 ENSMUSG00000105105.1 ENSMUSG00000105105 ENSMUST00000199362 Gm31363 lincRNA Interval_84102 chr19 7223764 7224703 + 0 NA Intergenic Intergenic -6690 ENSMUSG00000035885.5 ENSMUSG00000035885 ENSMUST00000237087 Cox8a protein_coding Interval_126720 chr5 92263795 92264373 + 0 NA intron (ENSMUSG00000029413.14, intron 3 of 6) protein_coding-intron (ENSMUSG00000029413.14, intron 5 of 10) 8464 ENSMUSG00000029413.14 ENSMUSG00000029413 ENSMUST00000161212 Naaa protein_coding Interval_117360 chr4 123228821 123229305 + 0 NA Intergenic Intergenic -4790 ENSMUSG00000032744.4 ENSMUSG00000032744 ENSMUST00000127172 Heyl protein_coding Interval_113465 chr4 55191083 55191308 + 0 NA intron (ENSMUSG00000087614.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000087614.1, intron 1 of 2) 28187 ENSMUSG00000081177.1 ENSMUSG00000081177 ENSMUST00000118033 Gm12509 processed_pseudogene Interval_91359 chr2 38209971 38210494 + 0 NA intron (ENSMUSG00000035392.17, intron 2 of 5) protein_coding-intron (ENSMUSG00000035392.17, intron 2 of 21) 14890 ENSMUSG00000105046.1 ENSMUSG00000105046 ENSMUST00000200061 Gm44455 miRNA Interval_120317 chr4 147842666 147843020 + 0 NA intron (ENSMUSG00000059423.13, intron 1 of 4) protein_coding-intron (ENSMUSG00000059423.13, intron 1 of 3) 5523 ENSMUSG00000059423.13 ENSMUSG00000059423 ENSMUST00000135798 Zfp933 protein_coding Interval_168558 chr9 83557046 83558043 + 0 NA intron (ENSMUSG00000032261.16, intron 1 of 3) protein_coding-intron (ENSMUSG00000032261.16, intron 1 of 3) 9215 ENSMUSG00000032261.16 ENSMUSG00000032261 ENSMUST00000185664 Sh3bgrl2 protein_coding Interval_87425 chr19 49991433 49992192 + 0 NA Intergenic Intergenic 38923 ENSMUSG00000062083.1 ENSMUSG00000062083 ENSMUST00000071866 Rpl13a-ps1 processed_pseudogene Interval_118100 chr4 128949570 128950200 + 0 NA intron (ENSMUSG00000028789.16, intron 2 of 5) protein_coding-intron (ENSMUSG00000028789.16, intron 5 of 10) 12543 ENSMUSG00000028789.16 ENSMUSG00000028789 ENSMUST00000156739 Azin2 protein_coding Interval_66794 chr16 37675005 37677362 + 0 NA Intergenic Intergenic 21157 ENSMUSG00000116529.1 ENSMUSG00000116529 ENSMUST00000231714 Gm4600 processed_pseudogene Interval_138706 chr6 91307633 91308186 + 0 NA Intergenic Intergenic 57188 ENSMUSG00000030093.7 ENSMUSG00000030093 ENSMUST00000132936 Wnt7a protein_coding Interval_132339 chr5 144305393 144305563 + 0 NA intron (ENSMUSG00000047843.16, intron 3 of 3) protein_coding-intron (ENSMUSG00000038859.7, intron 3 of 13) -16571 ENSMUSG00000038859.7 ENSMUSG00000038859 ENSMUST00000129287 Baiap2l1 protein_coding Interval_38 GL456211.1 201874 202062 + 0 NA NA NA NA NA Interval_172344 chrX 13240476 13243514 + 0 NA intron (ENSMUSG00000100714.6, intron 1 of 2) lincRNA-intron (ENSMUSG00000100714.6, intron 1 of 2) 3668 ENSMUSG00000082090.1 ENSMUSG00000082090 ENSMUST00000119074 Gm16481 processed_pseudogene Interval_86708 chr19 42794457 42795878 + 0 NA intron (ENSMUSG00000074852.4, intron 11 of 11) protein_coding-intron (ENSMUSG00000074852.4, intron 11 of 11) 16057 ENSMUSG00000090235.1 ENSMUSG00000090235 ENSMUST00000160001 Gm16244 processed_transcript Interval_166183 chr9 57310564 57311426 + 0 NA Intergenic Intergenic 18420 ENSMUSG00000111457.1 ENSMUSG00000111457 ENSMUST00000214851 Gm18996 processed_pseudogene Interval_120034 chr4 141461110 141461418 + 0 NA intron (ENSMUSG00000006215.12, intron 2 of 14) protein_coding-intron (ENSMUSG00000006215.12, intron 2 of 15) 16558 ENSMUSG00000006215.12 ENSMUSG00000006215 ENSMUST00000130482 Zbtb17 protein_coding Interval_69348 chr16 92385215 92385613 + 0 NA Intergenic Intergenic -2731 ENSMUSG00000116693.1 ENSMUSG00000116693 ENSMUST00000232607 Gm29805 lincRNA Interval_154704 chr8 22715822 22716545 + 0 NA Intergenic Intergenic -9643 ENSMUSG00000031537.15 ENSMUSG00000031537 ENSMUST00000150214 Ikbkb protein_coding Interval_81689 chr18 63491563 63492287 + 0 NA Intergenic Intergenic -16244 ENSMUSG00000089156.1 ENSMUSG00000089156 ENSMUST00000158531 Gm23581 snRNA Interval_69422 chr16 93161255 93161432 + 0 NA Intergenic Intergenic 88588 ENSMUSG00000098983.1 ENSMUSG00000098983 ENSMUST00000184529 Gm28003 miRNA Interval_85580 chr19 28790361 28790949 + 0 NA Intergenic Intergenic 22547 ENSMUSG00000098069.1 ENSMUSG00000098069 ENSMUST00000182854 Gm26942 processed_pseudogene Interval_35373 chr12 21139529 21140006 + 0 NA intron (ENSMUSG00000052632.16, intron 1 of 27) protein_coding-intron (ENSMUSG00000052632.16, intron 1 of 26) 96808 ENSMUSG00000092229.3 ENSMUSG00000092229 ENSMUST00000174304 Gm5977 transcribed_unprocessed_pseudogene Interval_87382 chr19 48151897 48152223 + 0 NA Intergenic Intergenic 34712 ENSMUSG00000117690.1 ENSMUSG00000117690 ENSMUST00000237618 Gm50430 lincRNA Interval_137037 chr6 66886946 66887332 + 0 NA Intergenic Intergenic 8317 ENSMUSG00000053442.4 ENSMUSG00000053442 ENSMUST00000065878 4930597O21Rik processed_transcript Interval_103503 chr3 45348009 45348340 + 0 NA intron (ENSMUSG00000097040.6, intron 2 of 6) processed_transcript-intron (ENSMUSG00000097040.6, intron 4 of 8) -15764 ENSMUSG00000103430.1 ENSMUSG00000103430 ENSMUST00000194466 Gm36996 processed_pseudogene Interval_124833 chr5 56000738 56001126 + 0 NA Intergenic Intergenic -156406 ENSMUSG00000105685.1 ENSMUSG00000105685 ENSMUST00000198120 Gm43315 processed_pseudogene Interval_90904 chr2 33393296 33395181 + 0 NA Intergenic Intergenic -31192 ENSMUSG00000093138.1 ENSMUSG00000093138 ENSMUST00000175397 Gm25998 miRNA Interval_20063 chr10 112937199 112937415 + 0 NA Intergenic Intergenic 5883 ENSMUSG00000064707.1 ENSMUSG00000064707 ENSMUST00000082773 Gm22507 snRNA Interval_62720 chr15 96447948 96449346 + 0 NA intron (ENSMUSG00000033228.8, intron 1 of 14) protein_coding-intron (ENSMUSG00000033228.8, intron 1 of 14) -4592 ENSMUSG00000033228.8 ENSMUSG00000033228 ENSMUST00000227133 Scaf11 protein_coding Interval_110509 chr4 3393703 3394477 + 0 NA Intergenic Intergenic 7244 ENSMUSG00000083489.1 ENSMUSG00000083489 ENSMUST00000118568 Gm11784 unprocessed_pseudogene Interval_40530 chr12 105534648 105535856 + 0 NA Intergenic Intergenic 21772 ENSMUSG00000113535.1 ENSMUSG00000113535 ENSMUST00000223443 AU015791 lincRNA Interval_146026 chr7 43279073 43279342 + 0 NA Intergenic Intergenic 34087 ENSMUSG00000012640.16 ENSMUSG00000012640 ENSMUST00000135130 Zfp715 protein_coding Interval_54356 chr14 67893549 67894412 + 0 NA intron (ENSMUSG00000044447.5, intron 1 of 17) protein_coding-intron (ENSMUSG00000044447.5, intron 1 of 51) -34235 ENSMUSG00000098866.1 ENSMUSG00000098866 ENSMUST00000183732 Mir6539 miRNA Interval_160825 chr8 112916451 112916750 + 0 NA intron (ENSMUSG00000110455.1, intron 3 of 4) antisense-intron (ENSMUSG00000110455.1, intron 3 of 4) 88397 ENSMUSG00000110455.1 ENSMUSG00000110455 ENSMUST00000213082 Gm45904 antisense Interval_92339 chr2 59132548 59132817 + 0 NA intron (ENSMUSG00000036641.9, intron 1 of 14) protein_coding-intron (ENSMUSG00000036641.9, intron 1 of 14) 15941 ENSMUSG00000084250.1 ENSMUSG00000084250 ENSMUST00000118185 Gm13550 processed_pseudogene Interval_102023 chr3 15176616 15176902 + 0 NA Intergenic Intergenic -5317 ENSMUSG00000103912.1 ENSMUSG00000103912 ENSMUST00000194008 Gm33819 lincRNA Interval_86587 chr19 41905387 41906104 + 0 NA Intergenic Intergenic 2856 ENSMUSG00000117675.1 ENSMUSG00000117675 ENSMUST00000236252 Gm46644 processed_pseudogene Interval_82414 chr18 73821561 73822001 + 0 NA Intergenic Intergenic -6332 ENSMUSG00000024556.4 ENSMUSG00000024556 ENSMUST00000235595 Me2 protein_coding Interval_77065 chr17 86166396 86168974 + 0 NA promoter-TSS (ENSMUSG00000045038.14) protein_coding-promoter-TSS (ENSMUSG00000045038.14) -7890 ENSMUSG00000117546.1 ENSMUSG00000117546 ENSMUST00000234087 AC154542.1 TEC Interval_127100 chr5 100301075 100301569 + 0 NA intron (ENSMUSG00000085915.1, intron 1 of 4) unprocessed_pseudogene-intron (ENSMUSG00000085915.1, intron 1 of 4) 53797 ENSMUSG00000085915.1 ENSMUSG00000085915 ENSMUST00000150506 Gm8091 unprocessed_pseudogene Interval_19197 chr10 95440567 95440852 + 0 NA Intergenic Intergenic 14257 ENSMUSG00000112725.1 ENSMUSG00000112725 ENSMUST00000220014 Gm47600 processed_pseudogene Interval_159623 chr8 95841394 95841759 + 0 NA TTS (ENSMUSG00000036534.6) protein_coding-TTS (ENSMUSG00000036534.6) -7901 ENSMUSG00000110661.1 ENSMUSG00000110661 ENSMUST00000211921 Gm31805 lincRNA Interval_139948 chr6 112973139 112974717 + 0 NA Intergenic Intergenic -2285 ENSMUSG00000094189.1 ENSMUSG00000094189 ENSMUST00000117265 Gm6134 processed_pseudogene Interval_119503 chr4 137968117 137968726 + 0 NA Intergenic Intergenic -25092 ENSMUSG00000028760.16 ENSMUSG00000028760 ENSMUST00000148074 Eif4g3 protein_coding Interval_114446 chr4 77579653 77580310 + 0 NA intron (ENSMUSG00000028399.18, intron 3 of 6) protein_coding-intron (ENSMUSG00000028399.18, intron 3 of 14) -621483 ENSMUSG00000092829.1 ENSMUSG00000092829 ENSMUST00000175088 Gm23159 miRNA Interval_32195 chr11 106048651 106049140 + 0 NA TTS (ENSMUSG00000049354.8) protein_coding-TTS (ENSMUSG00000049354.8) 2957 ENSMUSG00000085033.1 ENSMUSG00000085033 ENSMUST00000135857 Gm11646 antisense Interval_6011 chr1 93887978 93889719 + 0 NA Intergenic Intergenic -17396 ENSMUSG00000101660.1 ENSMUSG00000101660 ENSMUST00000190039 Gm18666 unprocessed_pseudogene Interval_24261 chr11 31922607 31922847 + 0 NA intron (ENSMUSG00000020300.14, intron 4 of 8) protein_coding-intron (ENSMUSG00000020300.14, intron 5 of 9) -42865 ENSMUSG00000020299.6 ENSMUSG00000020299 ENSMUST00000102829 4930524B15Rik protein_coding Interval_126178 chr5 81555120 81556551 + 0 NA intron (ENSMUSG00000037605.16, intron 8 of 12) protein_coding-intron (ENSMUSG00000037605.16, intron 6 of 24) 20109 ENSMUSG00000107375.1 ENSMUSG00000107375 ENSMUST00000200696 Gm43084 TEC Interval_161528 chr8 120977113 120977638 + 0 NA intron (ENSMUSG00000092329.1, intron 1 of 15) protein_coding-intron (ENSMUSG00000092329.1, intron 1 of 15) -25552 ENSMUSG00000101886.1 ENSMUSG00000101886 ENSMUST00000187913 Gm28324 lincRNA Interval_23373 chr11 21992831 21994044 + 0 NA Intergenic Intergenic 8273 ENSMUSG00000005917.15 ENSMUSG00000005917 ENSMUST00000147486 Otx1 protein_coding Interval_85689 chr19 29675627 29675996 + 0 NA Intergenic Intergenic -22123 ENSMUSG00000024806.4 ENSMUSG00000024806 ENSMUST00000235954 Mlana protein_coding Interval_143688 chr7 14592487 14593763 + 0 NA intron (ENSMUSG00000041596.12, intron 4 of 9) transcribed_unprocessed_pseudogene-intron (ENSMUSG00000041596.12, intron 6 of 12) -23259 ENSMUSG00000098520.1 ENSMUSG00000098520 ENSMUST00000184001 Ranbp2-ps1 unprocessed_pseudogene Interval_29020 chr11 79931150 79931564 + 0 NA TTS (ENSMUSG00000035575.11) protein_coding-TTS (ENSMUSG00000035575.11) 25376 ENSMUSG00000082252.1 ENSMUSG00000082252 ENSMUST00000122438 Gm11204 processed_pseudogene Interval_105207 chr3 83841106 83841889 + 0 NA intron (ENSMUSG00000027995.10, intron 1 of 2) protein_coding-intron (ENSMUSG00000027995.10, intron 1 of 2) 270 ENSMUSG00000027995.10 ENSMUSG00000027995 ENSMUST00000029623 Tlr2 protein_coding Interval_50208 chr14 9735851 9736078 + 0 NA intron (ENSMUSG00000060579.13, intron 4 of 5) protein_coding-intron (ENSMUSG00000060579.13, intron 8 of 9) -127138 ENSMUSG00000089795.1 ENSMUSG00000089795 ENSMUST00000162465 Hmgb3-ps processed_pseudogene Interval_119370 chr4 137282834 137283480 + 0 NA intron (ENSMUSG00000036856.4, intron 1 of 4) protein_coding-intron (ENSMUSG00000036856.4, intron 1 of 4) 5668 ENSMUSG00000036856.4 ENSMUSG00000036856 ENSMUST00000045747 Wnt4 protein_coding Interval_61524 chr15 82165432 82167463 + 0 NA intron (ENSMUSG00000022463.8, intron 1 of 1) protein_coding-intron (ENSMUSG00000022463.8, intron 1 of 18) -19069 ENSMUSG00000116226.1 ENSMUSG00000116226 ENSMUST00000229390 Gm49502 TEC Interval_101615 chr3 7790906 7791265 + 0 NA Intergenic Intergenic -102250 ENSMUSG00000103399.1 ENSMUSG00000103399 ENSMUST00000194764 Gm29747 processed_pseudogene Interval_167767 chr9 72624769 72624980 + 0 NA Intergenic Intergenic -5354 ENSMUSG00000098573.1 ENSMUSG00000098573 ENSMUST00000184373 Gm27232 antisense Interval_145393 chr7 34437505 34437754 + 0 NA promoter-TSS (ENSMUSG00000085124.1) lincRNA-promoter-TSS (ENSMUSG00000085124.1) -508 ENSMUSG00000085124.1 ENSMUSG00000085124 ENSMUST00000140298 Gm12766 lincRNA Interval_138981 chr6 93986532 93987952 + 0 NA intron (ENSMUSG00000045095.16, intron 1 of 24) protein_coding-intron (ENSMUSG00000045095.16, intron 1 of 21) -74738 ENSMUSG00000045095.16 ENSMUSG00000045095 ENSMUST00000203034 Magi1 protein_coding Interval_100848 chr2 172864724 172865050 + 0 NA promoter-TSS (ENSMUSG00000093160.1) miRNA-promoter-TSS (ENSMUSG00000093160.1) -546 ENSMUSG00000093160.1 ENSMUSG00000093160 ENSMUST00000175419 Gm22773 miRNA Interval_147895 chr7 75238467 75238660 + 0 NA intron (ENSMUSG00000053025.13, intron 1 of 12) protein_coding-intron (ENSMUSG00000053025.13, intron 1 of 12) -36526 ENSMUSG00000088683.1 ENSMUSG00000088683 ENSMUST00000158058 Gm24858 misc_RNA Interval_145666 chr7 37028389 37029066 + 0 NA Intergenic Intergenic 99965 ENSMUSG00000101342.1 ENSMUSG00000101342 ENSMUST00000190381 Gm28078 lincRNA Interval_75915 chr17 73022604 73022915 + 0 NA exon (ENSMUSG00000117096.1, exon 2 of 3) lincRNA-exon (ENSMUSG00000117096.1, exon 2 of 3) 6319 ENSMUSG00000117096.1 ENSMUSG00000117096 ENSMUST00000233236 Gm30420 lincRNA Interval_86055 chr19 36064220 36065050 + 0 NA Intergenic Intergenic -7128 ENSMUSG00000024798.15 ENSMUSG00000024798 ENSMUST00000099505 Htr7 protein_coding Interval_88564 chr2 6178992 6179211 + 0 NA Intergenic Intergenic -14150 ENSMUSG00000087125.1 ENSMUSG00000087125 ENSMUST00000151782 A230108P19Rik antisense Interval_111900 chr4 32361666 32361889 + 0 NA intron (ENSMUSG00000040270.16, intron 2 of 3) protein_coding-intron (ENSMUSG00000040270.16, intron 2 of 7) -55658 ENSMUSG00000040270.16 ENSMUSG00000040270 ENSMUST00000125263 Bach2 protein_coding Interval_149615 chr7 100057693 100057994 + 0 NA Intergenic Intergenic 43617 ENSMUSG00000030726.16 ENSMUSG00000030726 ENSMUST00000156202 Pold3 protein_coding Interval_55428 chr14 87129463 87130986 + 0 NA intron (ENSMUSG00000022021.14, intron 1 of 26) protein_coding-intron (ENSMUSG00000022021.14, intron 1 of 27) 11011 ENSMUSG00000022021.14 ENSMUSG00000022021 ENSMUST00000226134 Diaph3 protein_coding Interval_71997 chr17 27500948 27502774 + 0 NA intron (ENSMUSG00000063239.17, intron 1 of 8) protein_coding-intron (ENSMUSG00000063239.17, intron 2 of 10) 11865 ENSMUSG00000063239.17 ENSMUSG00000063239 ENSMUST00000147865 Grm4 protein_coding Interval_132007 chr5 142229295 142230396 + 0 NA Intergenic Intergenic -53261 ENSMUSG00000097947.1 ENSMUSG00000097947 ENSMUST00000182990 Gm26970 processed_pseudogene Interval_152584 chr7 134839250 134840215 + 0 NA intron (ENSMUSG00000058325.6, intron 23 of 26) protein_coding-intron (ENSMUSG00000058325.6, intron 23 of 51) -60938 ENSMUSG00000110167.1 ENSMUSG00000110167 ENSMUST00000210342 Gm45532 TEC Interval_105395 chr3 85970715 85971821 + 0 NA exon (ENSMUSG00000028082.14, exon 1 of 21) protein_coding-exon (ENSMUSG00000028082.14, exon 1 of 21) -8358 ENSMUSG00000098444.1 ENSMUSG00000098444 ENSMUST00000185022 Gm27811 snRNA Interval_58603 chr15 36499736 36500055 + 0 NA TTS (ENSMUSG00000115084.1) TEC-TTS (ENSMUSG00000115084.1) -3180 ENSMUSG00000048307.8 ENSMUSG00000048307 ENSMUST00000228941 Ankrd46 protein_coding Interval_37475 chr12 69218425 69218706 + 0 NA intron (ENSMUSG00000020974.6, intron 5 of 18) protein_coding-intron (ENSMUSG00000020974.6, intron 5 of 18) -9361 ENSMUSG00000113190.1 ENSMUSG00000113190 ENSMUST00000220745 Gm47545 antisense Interval_1333 chr1 20759690 20762491 + 0 NA Intergenic Intergenic 18464 ENSMUSG00000041872.9 ENSMUSG00000041872 ENSMUST00000190692 Il17f protein_coding Interval_45173 chr13 52929185 52930183 + 0 NA promoter-TSS (ENSMUSG00000021460.17) protein_coding-promoter-TSS (ENSMUSG00000021460.17) -16738 ENSMUSG00000021460.17 ENSMUSG00000021460 ENSMUST00000151469 Auh protein_coding Interval_164254 chr9 34503242 34503476 + 0 NA intron (ENSMUSG00000032036.15, intron 3 of 3) protein_coding-intron (ENSMUSG00000032036.15, intron 1 of 16) 14564 ENSMUSG00000032036.15 ENSMUSG00000032036 ENSMUST00000188658 Kirrel3 protein_coding Interval_23681 chr11 24472485 24473279 + 0 NA intron (ENSMUSG00000087085.1, intron 2 of 3) lincRNA-intron (ENSMUSG00000087085.1, intron 2 of 3) -9027 ENSMUSG00000086892.1 ENSMUSG00000086892 ENSMUST00000152726 4933430M04Rik lincRNA Interval_42685 chr13 17949526 17950961 + 0 NA exon (ENSMUSG00000113750.1, exon 1 of 1) processed_pseudogene-exon (ENSMUSG00000113750.1, exon 1 of 1) 335 ENSMUSG00000113750.1 ENSMUSG00000113750 ENSMUST00000222318 Gm5628 processed_pseudogene Interval_25216 chr11 45493097 45493480 + 0 NA Intergenic Intergenic -72504 ENSMUSG00000085476.1 ENSMUSG00000085476 ENSMUST00000123422 Gm12162 lincRNA Interval_155699 chr8 36236069 36236897 + 0 NA intron (ENSMUSG00000039633.7, intron 1 of 11) protein_coding-intron (ENSMUSG00000039633.7, intron 1 of 11) 13033 ENSMUSG00000039633.7 ENSMUSG00000039633 ENSMUST00000065297 Lonrf1 protein_coding Interval_18900 chr10 92905130 92905442 + 0 NA intron (ENSMUSG00000020014.17, intron 48 of 67) protein_coding-intron (ENSMUSG00000020014.17, intron 9 of 11) 127676 ENSMUSG00000020014.17 ENSMUSG00000020014 ENSMUST00000171781 Cfap54 protein_coding Interval_131142 chr5 135400195 135400659 + 0 NA Intergenic Intergenic -5881 ENSMUSG00000053293.9 ENSMUSG00000053293 ENSMUST00000111171 Pom121 protein_coding Interval_10214 chr1 167242258 167243645 + 0 NA intron (ENSMUSG00000103139.1, intron 1 of 3) protein_coding-intron (ENSMUSG00000026558.13, intron 1 of 6) 494 ENSMUSG00000103139.1 ENSMUSG00000103139 ENSMUST00000193076 Gm37982 antisense Interval_126088 chr5 77289890 77290825 + 0 NA Intergenic Intergenic 17600 ENSMUSG00000093061.1 ENSMUSG00000093061 ENSMUST00000175320 Mir5098 miRNA Interval_30415 chr11 94235819 94236519 + 0 NA exon (ENSMUSG00000044177.4, exon 2 of 2) protein_coding-exon (ENSMUSG00000044177.4, exon 2 of 2) 9836 ENSMUSG00000044177.4 ENSMUSG00000044177 ENSMUST00000131352 Wfikkn2 protein_coding Interval_159209 chr8 91691477 91692688 + 0 NA Intergenic Intergenic 2329 ENSMUSG00000110073.1 ENSMUSG00000110073 ENSMUST00000211333 Gm2875 processed_pseudogene Interval_167820 chr9 72880245 72880667 + 0 NA intron (ENSMUSG00000036030.9, intron 11 of 19) protein_coding-intron (ENSMUSG00000036030.9, intron 11 of 19) -8589 ENSMUSG00000102330.1 ENSMUSG00000102330 ENSMUST00000193259 Gm37234 TEC Interval_17188 chr10 74529408 74529880 + 0 NA intron (ENSMUSG00000052613.16, intron 24 of 34) protein_coding-intron (ENSMUSG00000052613.16, intron 23 of 30) -291078 ENSMUSG00000112686.1 ENSMUSG00000112686 ENSMUST00000218638 Gm7034 processed_pseudogene Interval_23561 chr11 23369200 23369670 + 0 NA intron (ENSMUSG00000056342.16, intron 16 of 79) protein_coding-intron (ENSMUSG00000056342.16, intron 16 of 79) 62540 ENSMUSG00000056342.16 ENSMUSG00000056342 ENSMUST00000125701 Usp34 protein_coding Interval_81998 chr18 67014120 67014806 + 0 NA Intergenic Intergenic 17055 ENSMUSG00000117868.1 ENSMUSG00000117868 ENSMUST00000236079 Gm50165 lincRNA Interval_102880 chr3 32502647 32503357 + 0 NA Intergenic Intergenic -7894 ENSMUSG00000027667.13 ENSMUSG00000027667 ENSMUST00000193290 Zfp639 protein_coding Interval_139818 chr6 109150345 109151039 + 0 NA Intergenic Intergenic 25007 ENSMUSG00000107501.1 ENSMUSG00000107501 ENSMUST00000203862 Gm29781 processed_pseudogene Interval_149799 chr7 101642774 101643485 + 0 NA Intergenic Intergenic -20644 ENSMUSG00000001829.17 ENSMUSG00000001829 ENSMUST00000150832 Clpb protein_coding Interval_11848 chr1 186251151 186251461 + 0 NA Intergenic Intergenic 69049 ENSMUSG00000102790.1 ENSMUSG00000102790 ENSMUST00000193401 Gm37272 TEC Interval_140894 chr6 122636770 122636974 + 0 NA Intergenic Intergenic 10119 ENSMUSG00000046323.8 ENSMUSG00000046323 ENSMUST00000123429 Dppa3 protein_coding Interval_70738 chr17 14086410 14087297 + 0 NA Intergenic Intergenic 19597 ENSMUSG00000099476.1 ENSMUSG00000099476 ENSMUST00000188802 4930488N24Rik unprocessed_pseudogene Interval_145929 chr7 42160028 42160224 + 0 NA intron (ENSMUSG00000090619.2, intron 5 of 5) protein_coding-intron (ENSMUSG00000090619.2, intron 5 of 5) -33923 ENSMUSG00000092257.1 ENSMUSG00000092257 ENSMUST00000166539 Gm2308 processed_pseudogene Interval_60237 chr15 68923806 68924342 + 0 NA Intergenic Intergenic -4623 ENSMUSG00000022332.8 ENSMUSG00000022332 ENSMUST00000230073 Khdrbs3 protein_coding Interval_15960 chr10 59687311 59687783 + 0 NA Intergenic Intergenic -15071 ENSMUSG00000020111.15 ENSMUSG00000020111 ENSMUST00000166565 Micu1 protein_coding Interval_54532 chr14 70519679 70521095 + 0 NA promoter-TSS (ENSMUSG00000022098.10) protein_coding-promoter-TSS (ENSMUSG00000022098.10) 1789 ENSMUSG00000022097.4 ENSMUSG00000022097 ENSMUST00000022692 Sftpc protein_coding Interval_36703 chr12 52257379 52257647 + 0 NA intron (ENSMUSG00000035142.18, intron 5 of 5) protein_coding-intron (ENSMUSG00000035142.18, intron 6 of 10) 81426 ENSMUSG00000035142.18 ENSMUSG00000035142 ENSMUST00000162111 Nubpl protein_coding Interval_62785 chr15 96948221 96948778 + 0 NA Intergenic Intergenic -25094 ENSMUSG00000116202.1 ENSMUSG00000116202 ENSMUST00000229718 Rpl10a-ps3 processed_pseudogene Interval_100943 chr2 173545988 173546615 + 0 NA Intergenic Intergenic 23715 ENSMUSG00000027518.3 ENSMUSG00000027518 ENSMUST00000029023 1700021F07Rik protein_coding Interval_13184 chr10 12893876 12894295 + 0 NA Intergenic Intergenic 29005 ENSMUSG00000097378.8 ENSMUSG00000097378 ENSMUST00000180529 B230208H11Rik lincRNA Interval_94460 chr2 91382043 91382705 + 0 NA intron (ENSMUSG00000040591.18, intron 3 of 3) protein_coding-intron (ENSMUSG00000040591.18, intron 3 of 8) 24762 ENSMUSG00000080507.2 ENSMUSG00000080507 ENSMUST00000116857 Gm22071 miRNA Interval_163271 chr9 20452498 20452719 + 0 NA intron (ENSMUSG00000063108.15, intron 1 of 3) protein_coding-intron (ENSMUSG00000063108.15, intron 2 of 7) 4563 ENSMUSG00000111626.1 ENSMUSG00000111626 ENSMUST00000215252 Gm48738 processed_pseudogene Interval_145691 chr7 37452094 37452522 + 0 NA intron (ENSMUSG00000043456.17, intron 3 of 3) protein_coding-intron (ENSMUSG00000043456.17, intron 3 of 3) 15114 ENSMUSG00000108790.1 ENSMUSG00000108790 ENSMUST00000205574 Gm44806 TEC Interval_50944 chr14 20970172 20970431 + 0 NA intron (ENSMUSG00000021823.10, intron 2 of 7) protein_coding-intron (ENSMUSG00000021823.10, intron 2 of 20) 40903 ENSMUSG00000021823.10 ENSMUSG00000021823 ENSMUST00000224380 Vcl protein_coding Interval_90446 chr2 30482882 30483372 + 0 NA Intergenic Intergenic -8908 ENSMUSG00000089762.3 ENSMUSG00000089762 ENSMUST00000065134 Ier5l protein_coding Interval_19961 chr10 111519953 111520260 + 0 NA Intergenic Intergenic 12410 ENSMUSG00000020205.8 ENSMUSG00000020205 ENSMUST00000186359 Phlda1 protein_coding Interval_43025 chr13 23297962 23300253 + 0 NA TTS (ENSMUSG00000080698.1) processed_pseudogene-TTS (ENSMUSG00000080698.1) 1058 ENSMUSG00000080698.1 ENSMUSG00000080698 ENSMUST00000119479 Gm11333 processed_pseudogene Interval_80731 chr18 46631668 46631895 + 0 NA intron (ENSMUSG00000117780.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000117780.1, intron 1 of 2) 974 ENSMUSG00000117780.1 ENSMUSG00000117780 ENSMUST00000236340 Gm3734 lincRNA Interval_135991 chr6 49273063 49275650 + 0 NA Intergenic Intergenic -10323 ENSMUSG00000029817.11 ENSMUSG00000029817 ENSMUST00000204013 Tra2a protein_coding Interval_157373 chr8 69934714 69937140 + 0 NA exon (ENSMUSG00000036180.15, exon 3 of 13) protein_coding-exon (ENSMUSG00000036180.15, exon 3 of 13) -33215 ENSMUSG00000048967.16 ENSMUSG00000048967 ENSMUST00000152456 Yjefn3 protein_coding Interval_113575 chr4 56791342 56792034 + 0 NA intron (ENSMUSG00000028431.11, intron 8 of 36) protein_coding-intron (ENSMUSG00000028431.11, intron 8 of 36) -10657 ENSMUSG00000038827.11 ENSMUSG00000038827 ENSMUST00000147763 Abitram protein_coding Interval_126134 chr5 78165927 78166204 + 0 NA Intergenic Intergenic -256605 ENSMUSG00000106960.1 ENSMUSG00000106960 ENSMUST00000202676 Gm42673 processed_pseudogene Interval_70259 chr17 7757641 7759082 + 0 NA intron (ENSMUSG00000071984.11, intron 15 of 22) protein_coding-intron (ENSMUSG00000071984.11, intron 2 of 5) 53521 ENSMUSG00000094603.1 ENSMUSG00000094603 ENSMUST00000177784 Gm25872 miRNA Interval_118120 chr4 129064696 129065301 + 0 NA intron (ENSMUSG00000028793.15, intron 1 of 8) protein_coding-intron (ENSMUSG00000028793.15, intron 1 of 9) 6727 ENSMUSG00000028793.15 ENSMUSG00000028793 ENSMUST00000147238 Rnf19b protein_coding Interval_91296 chr2 37516157 37517574 + 0 NA intron (ENSMUSG00000035437.15, intron 1 of 13) protein_coding-intron (ENSMUSG00000035437.15, intron 13 of 25) 533 ENSMUSG00000053164.6 ENSMUSG00000053164 ENSMUST00000065441 Gpr21 protein_coding Interval_33237 chr11 115412223 115414234 + 0 NA TTS (ENSMUSG00000018858.15) protein_coding-TTS (ENSMUSG00000018858.15) 3367 ENSMUSG00000018858.15 ENSMUSG00000018858 ENSMUST00000134386 Mrpl58 protein_coding Interval_146213 chr7 44731952 44732393 + 0 NA exon (ENSMUSG00000048012.19, exon 5 of 5) protein_coding-exon (ENSMUSG00000048012.19, exon 5 of 5) 12058 ENSMUSG00000048012.19 ENSMUSG00000048012 ENSMUST00000126366 Zfp473 protein_coding Interval_138798 chr6 91971649 91972606 + 0 NA Intergenic Intergenic -32614 ENSMUSG00000108625.1 ENSMUSG00000108625 ENSMUST00000205414 Gm44711 TEC Interval_59496 chr15 54610264 54610511 + 0 NA Intergenic Intergenic 39195 ENSMUSG00000024479.3 ENSMUSG00000024479 ENSMUST00000025356 Mal2 protein_coding Interval_27991 chr11 72025640 72026311 + 0 NA Intergenic Intergenic 3220 ENSMUSG00000080577.1 ENSMUSG00000080577 ENSMUST00000116927 Gm23226 snRNA Interval_75682 chr17 70642554 70643207 + 0 NA intron (ENSMUSG00000003279.17, intron 2 of 9) protein_coding-intron (ENSMUSG00000003279.17, intron 7 of 14) 112702 ENSMUSG00000097282.1 ENSMUSG00000097282 ENSMUST00000181546 5031415H12Rik antisense Interval_56223 chr14 113585673 113586208 + 0 NA Intergenic Intergenic -95280 ENSMUSG00000086415.1 ENSMUSG00000086415 ENSMUST00000150617 Gm4487 processed_pseudogene Interval_16782 chr10 68127594 68130055 + 0 NA exon (ENSMUSG00000019947.10, exon 7 of 11) protein_coding-exon (ENSMUSG00000019947.10, exon 7 of 11) -102198 ENSMUSG00000086838.1 ENSMUSG00000086838 ENSMUST00000143555 Gm16212 antisense Interval_150742 chr7 114051397 114051609 + 0 NA exon (ENSMUSG00000055723.6, exon 5 of 6) protein_coding-exon (ENSMUSG00000055723.6, exon 5 of 6) -35395 ENSMUSG00000110248.1 ENSMUSG00000110248 ENSMUST00000210417 Gm45615 antisense Interval_4463 chr1 74361597 74362858 + 0 NA promoter-TSS (ENSMUSG00000073650.8) protein_coding-promoter-TSS (ENSMUSG00000073650.8) -215 ENSMUSG00000073650.8 ENSMUSG00000073650 ENSMUST00000186688 Catip protein_coding Interval_110437 chr3 158160418 158160767 + 0 NA exon (ENSMUSG00000028176.13, exon 22 of 28) protein_coding-exon (ENSMUSG00000028176.13, exon 22 of 28) -19644 ENSMUSG00000106043.1 ENSMUSG00000106043 ENSMUST00000198578 Gm42968 TEC Interval_45744 chr13 57552251 57552467 + 0 NA intron (ENSMUSG00000056222.15, intron 6 of 10) protein_coding-intron (ENSMUSG00000056222.15, intron 4 of 9) 275681 ENSMUSG00000114411.1 ENSMUSG00000114411 ENSMUST00000224461 Gm48176 processed_pseudogene Interval_28082 chr11 72705436 72706524 + 0 NA intron (ENSMUSG00000020790.14, intron 1 of 24) protein_coding-intron (ENSMUSG00000020790.14, intron 1 of 24) 15974 ENSMUSG00000020790.14 ENSMUSG00000020790 ENSMUST00000132889 Ankfy1 protein_coding Interval_70999 chr17 17080032 17080315 + 0 NA intron (ENSMUSG00000096696.1, intron 1 of 3) protein_coding-intron (ENSMUSG00000096696.1, intron 1 of 3) 16060 ENSMUSG00000096696.1 ENSMUSG00000096696 ENSMUST00000127027 Zfp960 protein_coding Interval_144153 chr7 19681171 19681383 + 0 NA exon (ENSMUSG00000074336.5, exon 1 of 1) protein_coding-exon (ENSMUSG00000074336.5, exon 1 of 1) 124 ENSMUSG00000074336.5 ENSMUSG00000074336 ENSMUST00000209130 Apoc4 protein_coding Interval_69341 chr16 92340363 92341565 + 0 NA Intergenic Intergenic -11710 ENSMUSG00000116967.1 ENSMUSG00000116967 ENSMUST00000231670 Smim34 processed_pseudogene Interval_12647 chr10 4126375 4127076 + 0 NA intron (ENSMUSG00000040675.17, intron 26 of 27) protein_coding-intron (ENSMUSG00000040675.17, intron 26 of 27) 22412 ENSMUSG00000065792.1 ENSMUSG00000065792 ENSMUST00000083858 Gm25515 snRNA Interval_107674 chr3 110086269 110086452 + 0 NA intron (ENSMUSG00000059857.15, intron 1 of 4) protein_coding-intron (ENSMUSG00000059857.15, intron 1 of 6) 158268 ENSMUSG00000105639.1 ENSMUSG00000105639 ENSMUST00000198691 Gm42516 TEC Interval_57585 chr15 12615308 12615500 + 0 NA intron (ENSMUSG00000022197.16, intron 2 of 4) protein_coding-intron (ENSMUSG00000022197.16, intron 2 of 4) 19942 ENSMUSG00000103130.1 ENSMUSG00000103130 ENSMUST00000191701 F830212C03Rik TEC Interval_62186 chr15 88681868 88684802 + 0 NA Intergenic Intergenic 35820 ENSMUSG00000022387.17 ENSMUSG00000022387 ENSMUST00000139515 Brd1 protein_coding Interval_114910 chr4 86884718 86886562 + 0 NA intron (ENSMUSG00000038007.14, intron 1 of 5) protein_coding-intron (ENSMUSG00000038007.14, intron 1 of 5) -28295 ENSMUSG00000028495.14 ENSMUSG00000028495 ENSMUST00000130001 Rps6 protein_coding Interval_144891 chr7 28790580 28790986 + 0 NA intron (ENSMUSG00000051735.7, intron 3 of 11) protein_coding-intron (ENSMUSG00000051735.7, intron 3 of 11) 1814 ENSMUSG00000051735.7 ENSMUSG00000051735 ENSMUST00000207345 Rinl protein_coding Interval_48271 chr13 97574502 97574718 + 0 NA intron (ENSMUSG00000110235.1, intron 2 of 2) lincRNA-intron (ENSMUSG00000110235.1, intron 2 of 2) 14584 ENSMUSG00000110235.1 ENSMUSG00000110235 ENSMUST00000210897 Gm5086 lincRNA Interval_32172 chr11 105919328 105920356 + 0 NA intron (ENSMUSG00000053580.16, intron 8 of 8) protein_coding-intron (ENSMUSG00000053580.16, intron 8 of 8) -23862 ENSMUSG00000103469.1 ENSMUSG00000103469 ENSMUST00000195385 Gm9910 TEC Interval_45177 chr13 52962785 52963129 + 0 NA Intergenic Intergenic 1775 ENSMUSG00000065771.1 ENSMUSG00000065771 ENSMUST00000083837 n-R5s54 rRNA Interval_92624 chr2 61655212 61657340 + 0 NA Intergenic Intergenic 12445 ENSMUSG00000064289.15 ENSMUSG00000064289 ENSMUST00000154693 Tank protein_coding Interval_53824 chr14 62339274 62339920 + 0 NA intron (ENSMUSG00000021932.13, intron 1 of 7) protein_coding-intron (ENSMUSG00000021932.13, intron 1 of 10) 7472 ENSMUSG00000021932.13 ENSMUSG00000021932 ENSMUST00000156608 Rnaseh2b protein_coding Interval_79206 chr18 25651308 25651773 + 0 NA intron (ENSMUSG00000024268.16, intron 2 of 5) protein_coding-intron (ENSMUSG00000024268.16, intron 2 of 12) -53086 ENSMUSG00000084537.1 ENSMUSG00000084537 ENSMUST00000122588 Gm25845 misc_RNA Interval_135919 chr6 48674481 48677100 + 0 NA promoter-TSS (ENSMUSG00000051124.6) protein_coding-promoter-TSS (ENSMUSG00000051124.6) -1721 ENSMUSG00000051124.6 ENSMUSG00000051124 ENSMUST00000147936 Gimap9 protein_coding Interval_21424 chr10 128518732 128519169 + 0 NA promoter-TSS (ENSMUSG00000025366.8) protein_coding-promoter-TSS (ENSMUSG00000025366.8) 1356 ENSMUSG00000025366.8 ENSMUSG00000025366 ENSMUST00000220045 Esyt1 protein_coding Interval_97826 chr2 144295505 144295776 + 0 NA Intergenic Intergenic 24977 ENSMUSG00000027424.11 ENSMUSG00000027424 ENSMUST00000110027 Mgme1 protein_coding Interval_28954 chr11 79542332 79543528 + 0 NA intron (ENSMUSG00000020716.16, intron 2 of 17) protein_coding-intron (ENSMUSG00000020716.16, intron 39 of 57) -12321 ENSMUSG00000078771.10 ENSMUSG00000078771 ENSMUST00000133148 Evi2a protein_coding Interval_51369 chr14 27058394 27059347 + 0 NA intron (ENSMUSG00000040717.6, intron 1 of 12) protein_coding-intron (ENSMUSG00000040717.6, intron 1 of 12) -8527 ENSMUSG00000040717.6 ENSMUSG00000040717 ENSMUST00000225829 Il17rd protein_coding Interval_94114 chr2 84425185 84425599 + 0 NA promoter-TSS (ENSMUSG00000059588.13) protein_coding-promoter-TSS (ENSMUSG00000059588.13) -126 ENSMUSG00000059588.13 ENSMUSG00000059588 ENSMUST00000151295 Calcrl protein_coding Interval_32458 chr11 107664107 107664441 + 0 NA intron (ENSMUSG00000020721.16, intron 11 of 13) protein_coding-intron (ENSMUSG00000020721.16, intron 26 of 31) -6778 ENSMUSG00000020721.16 ENSMUSG00000020721 ENSMUST00000153080 Helz protein_coding Interval_35255 chr12 19056751 19058306 + 0 NA Intergenic Intergenic 12822 ENSMUSG00000114188.1 ENSMUSG00000114188 ENSMUST00000222330 Gm40849 lincRNA Interval_33152 chr11 114789112 114792476 + 0 NA TTS (ENSMUSG00000000202.9) protein_coding-TTS (ENSMUSG00000000202.9) 5116 ENSMUSG00000000202.9 ENSMUSG00000000202 ENSMUST00000137965 Btbd17 protein_coding Interval_148829 chr7 89144269 89144493 + 0 NA exon (ENSMUSG00000039428.11, exon 1 of 1) protein_coding-exon (ENSMUSG00000039428.11, exon 1 of 1) 1116 ENSMUSG00000039428.11 ENSMUSG00000039428 ENSMUST00000137723 Tmem135 protein_coding Interval_54501 chr14 70288878 70290182 + 0 NA promoter-TSS (ENSMUSG00000022092.11) protein_coding-promoter-TSS (ENSMUSG00000022092.11) -253 ENSMUSG00000022092.11 ENSMUSG00000022092 ENSMUST00000228265 Ppp3cc protein_coding Interval_42367 chr13 12404346 12404567 + 0 NA intron (ENSMUSG00000050244.9, intron 8 of 9) protein_coding-intron (ENSMUSG00000050244.9, intron 8 of 44) 9429 ENSMUSG00000050244.9 ENSMUSG00000050244 ENSMUST00000221616 Heatr1 protein_coding Interval_40055 chr12 100898217 100899798 + 0 NA exon (ENSMUSG00000047415.12, exon 1 of 1) protein_coding-exon (ENSMUSG00000047415.12, exon 1 of 1) 398 ENSMUSG00000047415.12 ENSMUSG00000047415 ENSMUST00000222453 Gpr68 protein_coding Interval_89691 chr2 24659771 24660365 + 0 NA intron (ENSMUSG00000004113.18, intron 21 of 46) protein_coding-intron (ENSMUSG00000004113.18, intron 21 of 46) -14633 ENSMUSG00000083973.1 ENSMUSG00000083973 ENSMUST00000121558 Gm13459 processed_pseudogene Interval_98860 chr2 155622594 155623162 + 0 NA promoter-TSS (ENSMUSG00000076312.1) miRNA-promoter-TSS (ENSMUSG00000076312.1) -2 ENSMUSG00000076312.1 ENSMUSG00000076312 ENSMUST00000102357 Mir499 miRNA Interval_77725 chr17 94705703 94706465 + 0 NA Intergenic Intergenic 13195 ENSMUSG00000117586.1 ENSMUSG00000117586 ENSMUST00000234452 Gm50006 processed_pseudogene Interval_70755 chr17 14182849 14183050 + 0 NA Intergenic Intergenic -20779 ENSMUSG00000117185.1 ENSMUSG00000117185 ENSMUST00000232962 Gm34510 antisense Interval_39988 chr12 100277082 100277268 + 0 NA intron (ENSMUSG00000113679.1, intron 1 of 3) processed_transcript-intron (ENSMUSG00000113679.1, intron 1 of 3) -13081 ENSMUSG00000113679.1 ENSMUSG00000113679 ENSMUST00000220721 Gm10432 processed_transcript Interval_120498 chr4 149005987 149007002 + 0 NA intron (ENSMUSG00000028975.16, intron 3 of 3) protein_coding-intron (ENSMUSG00000028975.16, intron 3 of 8) 46134 ENSMUSG00000086740.1 ENSMUSG00000086740 ENSMUST00000153443 Gm17029 antisense Interval_329 chr1 4059346 4059716 + 0 NA intron (ENSMUSG00000025900.13, intron 25 of 29) protein_coding-intron (ENSMUSG00000025900.13, intron 25 of 29) -73316 ENSMUSG00000102343.1 ENSMUSG00000102343 ENSMUST00000192427 Gm37381 lincRNA Interval_35575 chr12 24951995 24952521 + 0 NA intron (ENSMUSG00000020646.17, intron 6 of 9) protein_coding-intron (ENSMUSG00000020646.17, intron 6 of 9) -22735 ENSMUSG00000036333.11 ENSMUSG00000036333 ENSMUST00000222481 Kidins220 protein_coding Interval_43514 chr13 32382384 32383619 + 0 NA intron (ENSMUSG00000085770.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000085770.1, intron 1 of 2) 687 ENSMUSG00000085770.1 ENSMUSG00000085770 ENSMUST00000138574 Gm11381 lincRNA Interval_104186 chr3 60020645 60021075 + 0 NA promoter-TSS (ENSMUSG00000103177.1) processed_pseudogene-promoter-TSS (ENSMUSG00000103177.1) 9 ENSMUSG00000103177.1 ENSMUSG00000103177 ENSMUST00000195422 Gm18427 processed_pseudogene Interval_51714 chr14 31586155 31586604 + 0 NA TTS (ENSMUSG00000057606.14) protein_coding-TTS (ENSMUSG00000057606.14) -28239 ENSMUSG00000057606.14 ENSMUSG00000057606 ENSMUST00000129238 Colq protein_coding Interval_118000 chr4 127735384 127736047 + 0 NA Intergenic Intergenic 76458 ENSMUSG00000087510.1 ENSMUSG00000087510 ENSMUST00000141892 1700112K13Rik lincRNA Interval_66050 chr16 31252346 31252546 + 0 NA exon (ENSMUSG00000047714.14, exon 6 of 6) protein_coding-exon (ENSMUSG00000047714.14, exon 6 of 6) -9059 ENSMUSG00000098403.1 ENSMUSG00000098403 ENSMUST00000183720 Gm27415 miRNA Interval_41323 chr12 112843748 112844222 + 0 NA Intergenic Intergenic -14611 ENSMUSG00000047832.9 ENSMUSG00000047832 ENSMUST00000223432 Cdca4 protein_coding Interval_166424 chr9 59375347 59376397 + 0 NA Intergenic Intergenic -48359 ENSMUSG00000025235.8 ENSMUSG00000025235 ENSMUST00000214225 Bbs4 protein_coding Interval_65087 chr16 18944773 18945088 + 0 NA promoter-TSS (ENSMUSG00000083658.1) processed_pseudogene-promoter-TSS (ENSMUSG00000083658.1) -265 ENSMUSG00000083658.1 ENSMUSG00000083658 ENSMUST00000120082 Gm15798 processed_pseudogene Interval_48823 chr13 103733992 103735103 + 0 NA Intergenic Intergenic -26928 ENSMUSG00000114206.1 ENSMUSG00000114206 ENSMUST00000225860 Gm30551 lincRNA Interval_32090 chr11 105201693 105202628 + 0 NA intron (ENSMUSG00000020694.17, intron 2 of 5) protein_coding-intron (ENSMUSG00000020694.17, intron 2 of 20) -6693 ENSMUSG00000020694.17 ENSMUSG00000020694 ENSMUST00000146910 Tlk2 protein_coding Interval_3698 chr1 61170039 61170386 + 0 NA Intergenic Intergenic 27030 ENSMUSG00000080785.1 ENSMUSG00000080785 ENSMUST00000120063 Gm11591 processed_pseudogene Interval_68650 chr16 83537496 83538570 + 0 NA Intergenic Intergenic -27494 ENSMUSG00000116533.1 ENSMUSG00000116533 ENSMUST00000232058 Gm49561 processed_pseudogene Interval_55660 chr14 98449238 98450296 + 0 NA Intergenic Intergenic 69933 ENSMUSG00000115486.1 ENSMUSG00000115486 ENSMUST00000226609 Gm49017 processed_pseudogene Interval_136672 chr6 57486341 57487024 + 0 NA intron (ENSMUSG00000108112.1, intron 2 of 13) antisense-intron (ENSMUSG00000093535.1, intron 6 of 6) 1561 ENSMUSG00000108112.1 ENSMUSG00000108112 ENSMUST00000204686 Gm45193 processed_transcript Interval_104048 chr3 57686072 57687406 + 0 NA intron (ENSMUSG00000074591.8, intron 2 of 5) protein_coding-intron (ENSMUSG00000074591.8, intron 2 of 3) 5796 ENSMUSG00000074591.8 ENSMUSG00000074591 ENSMUST00000099091 Ankub1 protein_coding Interval_1442 chr1 23496541 23496839 + 0 NA Intergenic Intergenic 17151 ENSMUSG00000097920.1 ENSMUSG00000097920 ENSMUST00000180769 Gm7784 processed_pseudogene Interval_84125 chr19 7363963 7364969 + 0 NA promoter-TSS (ENSMUSG00000117743.1) antisense-promoter-TSS (ENSMUSG00000117743.1) -49 ENSMUSG00000117743.1 ENSMUSG00000117743 ENSMUST00000235544 Gm50232 antisense Interval_67135 chr16 43799829 43802450 + 0 NA intron (ENSMUSG00000022705.5, intron 3 of 7) protein_coding-intron (ENSMUSG00000022705.5, intron 2 of 6) 3722 ENSMUSG00000093134.1 ENSMUSG00000093134 ENSMUST00000175393 Gm25996 miRNA Interval_165632 chr9 50528035 50528998 + 0 NA promoter-TSS (ENSMUSG00000111654.1) antisense-promoter-TSS (ENSMUSG00000111654.1) -251 ENSMUSG00000111654.1 ENSMUSG00000111654 ENSMUST00000216563 Gm47077 antisense Interval_95172 chr2 104522781 104523276 + 0 NA Intergenic Intergenic -14409 ENSMUSG00000081447.1 ENSMUSG00000081447 ENSMUST00000117214 Gm13870 processed_pseudogene Interval_97242 chr2 132577473 132578626 + 0 NA promoter-TSS (ENSMUSG00000027346.15) protein_coding-promoter-TSS (ENSMUSG00000027346.15) 186 ENSMUSG00000027346.15 ENSMUSG00000027346 ENSMUST00000131617 Gpcpd1 protein_coding Interval_103981 chr3 56100122 56100288 + 0 NA intron (ENSMUSG00000027799.12, intron 1 of 57) protein_coding-intron (ENSMUSG00000027799.12, intron 1 of 57) 25954 ENSMUSG00000106211.1 ENSMUSG00000106211 ENSMUST00000197736 Gm42842 TEC Interval_148721 chr7 84616067 84616339 + 0 NA intron (ENSMUSG00000030629.15, intron 7 of 7) protein_coding-intron (ENSMUSG00000030629.15, intron 7 of 7) -10299 ENSMUSG00000030630.16 ENSMUSG00000030630 ENSMUST00000134390 Fah protein_coding Interval_116847 chr4 117665461 117665750 + 0 NA intron (ENSMUSG00000033423.16, intron 7 of 7) protein_coding-intron (ENSMUSG00000033423.16, intron 8 of 8) 16648 ENSMUSG00000009640.11 ENSMUSG00000009640 ENSMUST00000127750 Dmap1 protein_coding Interval_173620 chrX 101126546 101127097 + 0 NA intron (ENSMUSG00000046032.16, intron 4 of 5) protein_coding-intron (ENSMUSG00000046032.16, intron 4 of 5) 14731 ENSMUSG00000088114.1 ENSMUSG00000088114 ENSMUST00000157489 Gm24061 snoRNA Interval_32317 chr11 106882304 106882599 + 0 NA intron (ENSMUSG00000018363.16, intron 2 of 19) protein_coding-intron (ENSMUSG00000018363.16, intron 1 of 18) 37908 ENSMUSG00000018363.16 ENSMUSG00000018363 ENSMUST00000144027 Smurf2 protein_coding Interval_102542 chr3 27612823 27613466 + 0 NA intron (ENSMUSG00000039286.12, intron 4 of 26) protein_coding-intron (ENSMUSG00000039286.12, intron 3 of 25) -28149 ENSMUSG00000092695.1 ENSMUSG00000092695 ENSMUST00000174954 Mir3092 miRNA Interval_98198 chr2 149778828 149779294 + 0 NA intron (ENSMUSG00000087029.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000087029.1, intron 1 of 1) 19640 ENSMUSG00000087029.1 ENSMUSG00000087029 ENSMUST00000139471 Gm14133 lincRNA Interval_119210 chr4 136224690 136225751 + 0 NA intron (ENSMUSG00000036995.7, intron 1 of 24) protein_coding-intron (ENSMUSG00000036995.7, intron 1 of 24) 18855 ENSMUSG00000036995.7 ENSMUSG00000036995 ENSMUST00000047526 Asap3 protein_coding Interval_3582 chr1 59739274 59740178 + 0 NA Intergenic Intergenic 34936 ENSMUSG00000089093.3 ENSMUSG00000089093 ENSMUST00000158468 Snord11 snoRNA Interval_84321 chr19 10079287 10079932 + 0 NA intron (ENSMUSG00000024665.8, intron 2 of 5) protein_coding-intron (ENSMUSG00000024665.8, intron 5 of 11) -8422 ENSMUSG00000024665.8 ENSMUSG00000024665 ENSMUST00000235937 Fads2 protein_coding Interval_48076 chr13 95819587 95820504 + 0 NA intron (ENSMUSG00000021676.10, intron 2 of 6) protein_coding-intron (ENSMUSG00000021676.10, intron 2 of 35) 77075 ENSMUSG00000065866.1 ENSMUSG00000065866 ENSMUST00000083932 Gm24032 snRNA Interval_76147 chr17 75557043 75557607 + 0 NA Intergenic Intergenic -5452 ENSMUSG00000002017.10 ENSMUSG00000002017 ENSMUST00000141969 Fam98a protein_coding Interval_72224 chr17 28678741 28679029 + 0 NA intron (ENSMUSG00000036196.16, intron 2 of 5) protein_coding-intron (ENSMUSG00000036196.16, intron 2 of 19) 10904 ENSMUSG00000036196.16 ENSMUSG00000036196 ENSMUST00000233213 Slc26a8 protein_coding Interval_103047 chr3 34722402 34722722 + 0 NA Intergenic Intergenic -5900 ENSMUSG00000105153.4 ENSMUSG00000105153 ENSMUST00000198364 Gm3143 lincRNA Interval_50056 chr13 120317937 120319052 + 0 NA TTS (ENSMUSG00000095821.2) protein_coding-TTS (ENSMUSG00000095821.2) 1616 ENSMUSG00000095821.2 ENSMUSG00000095821 ENSMUST00000178349 Tcstv3 protein_coding Interval_61665 chr15 83273794 83274971 + 0 NA Intergenic Intergenic -16285 ENSMUSG00000116416.1 ENSMUSG00000116416 ENSMUST00000230161 Gm32886 processed_pseudogene Interval_107300 chr3 105570395 105571500 + 0 NA intron (ENSMUSG00000040896.16, intron 2 of 4) protein_coding-intron (ENSMUSG00000040896.16, intron 1 of 6) 68040 ENSMUSG00000105753.1 ENSMUSG00000105753 ENSMUST00000200070 Gm43847 sense_intronic Interval_166474 chr9 59885027 59885380 + 0 NA exon (ENSMUSG00000111833.1, exon 1 of 1) processed_pseudogene-exon (ENSMUSG00000111833.1, exon 1 of 1) 194 ENSMUSG00000111833.1 ENSMUSG00000111833 ENSMUST00000214655 Gm48805 processed_pseudogene Interval_56664 chr14 121264989 121265550 + 0 NA intron (ENSMUSG00000025555.14, intron 3 of 3) protein_coding-intron (ENSMUSG00000025555.14, intron 16 of 26) 16563 ENSMUSG00000085133.2 ENSMUSG00000085133 ENSMUST00000130256 B930095G15Rik sense_intronic Interval_65515 chr16 23006263 23007180 + 0 NA intron (ENSMUSG00000060459.14, intron 4 of 10) protein_coding-intron (ENSMUSG00000060459.14, intron 4 of 10) 10317 ENSMUSG00000090021.2 ENSMUSG00000090021 ENSMUST00000159889 Gm6493 processed_pseudogene Interval_60047 chr15 64211351 64211558 + 0 NA intron (ENSMUSG00000022377.16, intron 2 of 4) protein_coding-intron (ENSMUSG00000022377.16, intron 3 of 30) -87648 ENSMUSG00000022377.16 ENSMUSG00000022377 ENSMUST00000175963 Asap1 protein_coding Interval_50280 chr14 11611599 11612011 + 0 NA intron (ENSMUSG00000021745.14, intron 1 of 3) protein_coding-intron (ENSMUSG00000021745.14, intron 1 of 29) -91035 ENSMUSG00000114849.1 ENSMUSG00000114849 ENSMUST00000224543 Gm48595 lincRNA Interval_5857 chr1 92696584 92697427 + 0 NA Intergenic Intergenic 20197 ENSMUSG00000100546.1 ENSMUSG00000100546 ENSMUST00000188188 Gm29483 lincRNA Interval_18393 chr10 85507576 85508318 + 0 NA intron (ENSMUSG00000020042.15, intron 1 of 16) protein_coding-intron (ENSMUSG00000020042.15, intron 1 of 9) -137256 ENSMUSG00000020042.15 ENSMUSG00000020042 ENSMUST00000145433 Btbd11 protein_coding Interval_16146 chr10 61033953 61034374 + 0 NA intron (ENSMUSG00000093568.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000093568.1, intron 1 of 2) 2860 ENSMUSG00000093568.1 ENSMUSG00000093568 ENSMUST00000177492 Gm20611 lincRNA Interval_47113 chr13 75900950 75901182 + 0 NA intron (ENSMUSG00000021589.13, intron 3 of 5) protein_coding-intron (ENSMUSG00000021589.13, intron 7 of 11) -4081 ENSMUSG00000070170.1 ENSMUSG00000070170 ENSMUST00000093660 Gm24163 snoRNA Interval_65776 chr16 28770172 28771093 + 0 NA Intergenic Intergenic 65735 ENSMUSG00000051065.9 ENSMUSG00000051065 ENSMUST00000232571 Mb21d2 protein_coding Interval_83855 chr19 5110012 5110299 + 0 NA promoter-TSS (ENSMUSG00000024862.16) protein_coding-promoter-TSS (ENSMUSG00000024862.16) -3179 ENSMUSG00000024870.6 ENSMUSG00000024870 ENSMUST00000237201 Rab1b protein_coding Interval_145723 chr7 37787006 37787470 + 0 NA Intergenic Intergenic 37109 ENSMUSG00000064591.1 ENSMUSG00000064591 ENSMUST00000082657 Gm22302 snRNA Interval_25928 chr11 52668576 52668853 + 0 NA Intergenic Intergenic -95920 ENSMUSG00000036264.9 ENSMUSG00000036264 ENSMUST00000036796 Fstl4 protein_coding Interval_947 chr1 13342850 13343092 + 0 NA TTS (ENSMUSG00000103085.1) TEC-TTS (ENSMUSG00000103085.1) 5233 ENSMUSG00000103085.1 ENSMUSG00000103085 ENSMUST00000195506 Gm38120 TEC Interval_158273 chr8 80752328 80753598 + 0 NA Intergenic Intergenic -17728 ENSMUSG00000109584.1 ENSMUSG00000109584 ENSMUST00000210546 Gm7997 processed_pseudogene Interval_90005 chr2 27263430 27263624 + 0 NA exon (ENSMUSG00000009621.18, exon 28 of 28) protein_coding-exon (ENSMUSG00000009621.18, exon 28 of 28) -53590 ENSMUSG00000009614.16 ENSMUSG00000009614 ENSMUST00000129975 Sardh protein_coding Interval_86692 chr19 42661381 42661881 + 0 NA Intergenic Intergenic 38271 ENSMUSG00000077768.1 ENSMUSG00000077768 ENSMUST00000104580 Gm25216 snoRNA Interval_104013 chr3 57286970 57288134 + 0 NA TTS (ENSMUSG00000027800.14) protein_coding-TTS (ENSMUSG00000027800.14) 7000 ENSMUSG00000027800.14 ENSMUSG00000027800 ENSMUST00000196704 Tm4sf1 protein_coding Interval_174435 chrX 152275704 152276136 + 0 NA Intergenic Intergenic 6114 ENSMUSG00000025332.14 ENSMUSG00000025332 ENSMUST00000155793 Kdm5c protein_coding Interval_78005 chr18 6626544 6627885 + 0 NA intron (ENSMUSG00000039540.9, intron 4 of 7) protein_coding-intron (ENSMUSG00000039540.9, intron 6 of 9) 23585 ENSMUSG00000039540.9 ENSMUSG00000039540 ENSMUST00000234337 4921524L21Rik protein_coding Interval_128138 chr5 111239159 111239743 + 0 NA TTS (ENSMUSG00000033209.17) protein_coding-TTS (ENSMUSG00000033209.17) 35643 ENSMUSG00000099130.1 ENSMUSG00000099130 ENSMUST00000183861 Gm27602 misc_RNA Interval_147166 chr7 64009612 64010136 + 0 NA intron (ENSMUSG00000108393.1, intron 3 of 4) lincRNA-intron (ENSMUSG00000108393.1, intron 3 of 4) 2105 ENSMUSG00000108393.1 ENSMUSG00000108393 ENSMUST00000206557 Gm32633 lincRNA Interval_129934 chr5 123141098 123142552 + 0 NA promoter-TSS (ENSMUSG00000038384.16) protein_coding-promoter-TSS (ENSMUSG00000038384.16) -368 ENSMUSG00000038384.16 ENSMUSG00000038384 ENSMUST00000162839 Setd1b protein_coding Interval_128567 chr5 114075682 114075922 + 0 NA intron (ENSMUSG00000042078.14, intron 1 of 6) protein_coding-intron (ENSMUSG00000042078.14, intron 1 of 15) 10288 ENSMUSG00000029592.11 ENSMUSG00000029592 ENSMUST00000198457 Usp30 protein_coding Interval_80959 chr18 51117231 51119109 + 0 NA intron (ENSMUSG00000073565.5, intron 1 of 2) protein_coding-intron (ENSMUSG00000073565.5, intron 1 of 1) 432 ENSMUSG00000073565.5 ENSMUSG00000073565 ENSMUST00000235541 Prr16 protein_coding Interval_157842 chr8 74869589 74870797 + 0 NA Intergenic Intergenic -3347 ENSMUSG00000031621.9 ENSMUSG00000031621 ENSMUST00000174427 Isx protein_coding Interval_16879 chr10 69414896 69415205 + 0 NA intron (ENSMUSG00000069601.14, intron 1 of 1) protein_coding-intron (ENSMUSG00000069601.14, intron 1 of 1) 8698 ENSMUSG00000111899.1 ENSMUSG00000111899 ENSMUST00000218846 Gm18636 processed_pseudogene Interval_172032 chr9 123691706 123691955 + 0 NA intron (ENSMUSG00000090608.1, intron 2 of 2) protein_coding-intron (ENSMUSG00000029530.16, intron 1 of 2) -1638 ENSMUSG00000058922.7 ENSMUSG00000058922 ENSMUST00000168019 Gm10052 processed_pseudogene Interval_24671 chr11 35797374 35799318 + 0 NA exon (ENSMUSG00000051062.6, exon 1 of 1) protein_coding-exon (ENSMUSG00000051062.6, exon 1 of 1) 538 ENSMUSG00000051062.6 ENSMUSG00000051062 ENSMUST00000160726 Fbll1 protein_coding Interval_3093 chr1 53191411 53191954 + 0 NA intron (ENSMUSG00000026098.13, intron 12 of 12) protein_coding-intron (ENSMUSG00000026098.13, intron 12 of 12) -4074 ENSMUSG00000060715.9 ENSMUSG00000060715 ENSMUST00000190748 1700019A02Rik protein_coding Interval_62323 chr15 90182538 90183699 + 0 NA Intergenic Intergenic -41231 ENSMUSG00000075470.2 ENSMUSG00000075470 ENSMUST00000231200 Alg10b protein_coding Interval_27085 chr11 62769031 62769508 + 0 NA intron (ENSMUSG00000047342.17, intron 5 of 6) protein_coding-intron (ENSMUSG00000047342.17, intron 2 of 2) -7716 ENSMUSG00000064692.1 ENSMUSG00000064692 ENSMUST00000082758 Gm24151 snoRNA Interval_58520 chr15 35460167 35460339 + 0 NA intron (ENSMUSG00000037646.10, intron 16 of 28) protein_coding-intron (ENSMUSG00000037646.10, intron 16 of 61) -27147 ENSMUSG00000089133.1 ENSMUSG00000089133 ENSMUST00000158508 Gm24771 snoRNA Interval_148408 chr7 81084953 81085165 + 0 NA intron (ENSMUSG00000038763.12, intron 5 of 13) protein_coding-intron (ENSMUSG00000038763.12, intron 5 of 13) -9772 ENSMUSG00000038763.12 ENSMUSG00000038763 ENSMUST00000151115 Alpk3 protein_coding Interval_61052 chr15 78967044 78969051 + 0 NA exon (ENSMUSG00000033088.19, exon 8 of 24) protein_coding-exon (ENSMUSG00000033088.19, exon 8 of 24) 20128 ENSMUSG00000033088.19 ENSMUSG00000033088 ENSMUST00000129922 Triobp protein_coding Interval_110320 chr3 156778446 156778782 + 0 NA intron (ENSMUSG00000040037.13, intron 1 of 6) protein_coding-intron (ENSMUSG00000040037.13, intron 1 of 6) -37423 ENSMUSG00000083122.1 ENSMUSG00000083122 ENSMUST00000117320 Gm15578 unprocessed_pseudogene Interval_38634 chr12 80713320 80715507 + 0 NA intron (ENSMUSG00000066438.6, intron 2 of 4) protein_coding-intron (ENSMUSG00000066438.6, intron 6 of 12) -7319 ENSMUSG00000066438.6 ENSMUSG00000066438 ENSMUST00000153762 Plekhd1 protein_coding Interval_6857 chr1 120120017 120121962 + 0 NA promoter-TSS (ENSMUSG00000026385.16) protein_coding-promoter-TSS (ENSMUSG00000026385.16) -52 ENSMUSG00000026385.16 ENSMUSG00000026385 ENSMUST00000149628 Dbi protein_coding Interval_34742 chr12 9165512 9167380 + 0 NA Intergenic Intergenic 136419 ENSMUSG00000066637.2 ENSMUSG00000066637 ENSMUST00000219470 Ttc32 protein_coding Interval_117273 chr4 121194363 121195158 + 0 NA intron (ENSMUSG00000049878.13, intron 1 of 7) protein_coding-intron (ENSMUSG00000049878.13, intron 1 of 7) 20324 ENSMUSG00000049878.13 ENSMUSG00000049878 ENSMUST00000222814 Rlf protein_coding Interval_9760 chr1 161918657 161919716 + 0 NA Intergenic Intergenic 27039 ENSMUSG00000103158.5 ENSMUSG00000103158 ENSMUST00000194266 Gm31925 lincRNA Interval_15865 chr10 58540421 58541058 + 0 NA intron (ENSMUSG00000038010.9, intron 11 of 15) protein_coding-intron (ENSMUSG00000038010.9, intron 11 of 15) -14528 ENSMUSG00000112670.1 ENSMUSG00000112670 ENSMUST00000219887 Gm18042 processed_pseudogene Interval_118558 chr4 132498943 132499457 + 0 NA intron (ENSMUSG00000028893.8, intron 4 of 9) protein_coding-intron (ENSMUSG00000028893.8, intron 4 of 9) 10449 ENSMUSG00000086997.1 ENSMUSG00000086997 ENSMUST00000131733 Gm12981 antisense Interval_13443 chr10 18323714 18323987 + 0 NA intron (ENSMUSG00000039835.16, intron 1 of 6) protein_coding-intron (ENSMUSG00000039835.16, intron 1 of 6) 4865 ENSMUSG00000039835.16 ENSMUSG00000039835 ENSMUST00000100054 Nhsl1 protein_coding Interval_52832 chr14 50943970 50945262 + 0 NA promoter-TSS (ENSMUSG00000021871.19) protein_coding-promoter-TSS (ENSMUSG00000021871.19) 93 ENSMUSG00000115338.2 ENSMUSG00000115338 ENSMUST00000228631 Pnp protein_coding Interval_123983 chr5 37004266 37004979 + 0 NA Intergenic Intergenic -27666 ENSMUSG00000039474.13 ENSMUSG00000039474 ENSMUST00000167937 Wfs1 protein_coding Interval_47611 chr13 90042263 90043338 + 0 NA intron (ENSMUSG00000021615.13, intron 3 of 8) protein_coding-intron (ENSMUSG00000021615.13, intron 3 of 7) 46282 ENSMUSG00000021615.13 ENSMUSG00000021615 ENSMUST00000161396 Xrcc4 protein_coding Interval_98556 chr2 153207841 153208170 + 0 NA intron (ENSMUSG00000068040.10, intron 4 of 4) protein_coding-intron (ENSMUSG00000068040.10, intron 17 of 17) 7757 ENSMUSG00000068040.10 ENSMUSG00000068040 ENSMUST00000149390 Tm9sf4 protein_coding Interval_168995 chr9 90095840 90096237 + 0 NA promoter-TSS (ENSMUSG00000062270.14) protein_coding-promoter-TSS (ENSMUSG00000062270.14) 18621 ENSMUSG00000062270.14 ENSMUSG00000062270 ENSMUST00000185433 Morf4l1 protein_coding Interval_112558 chr4 43121416 43121853 + 0 NA intron (ENSMUSG00000028456.18, intron 1 of 6) protein_coding-intron (ENSMUSG00000028456.18, intron 7 of 38) 14994 ENSMUSG00000077552.1 ENSMUSG00000077552 ENSMUST00000104364 Gm23709 snoRNA Interval_74709 chr17 56098283 56099120 + 0 NA promoter-TSS (ENSMUSG00000002833.11) protein_coding-promoter-TSS (ENSMUSG00000002833.11) 11102 ENSMUSG00000002831.14 ENSMUSG00000002831 ENSMUST00000190703 Plin4 protein_coding Interval_68972 chr16 89849062 89850027 + 0 NA intron (ENSMUSG00000002489.16, intron 12 of 27) protein_coding-intron (ENSMUSG00000002489.16, intron 12 of 27) -54262 ENSMUSG00000002489.16 ENSMUSG00000002489 ENSMUST00000136760 Tiam1 protein_coding Interval_36588 chr12 50982915 50983816 + 0 NA Intergenic Intergenic 21508 ENSMUSG00000112685.1 ENSMUSG00000112685 ENSMUST00000218991 Gm40421 lincRNA Interval_10868 chr1 176352710 176353132 + 0 NA Intergenic Intergenic -13278 ENSMUSG00000102446.1 ENSMUSG00000102446 ENSMUST00000193904 Gm17965 processed_pseudogene Interval_47771 chr13 92530299 92531378 + 0 NA promoter-TSS (ENSMUSG00000021706.14) protein_coding-promoter-TSS (ENSMUSG00000021706.14) -13764 ENSMUSG00000021706.14 ENSMUSG00000021706 ENSMUST00000154850 Zfyve16 protein_coding Interval_36940 chr12 55491624 55492965 + 0 NA promoter-TSS (ENSMUSG00000021025.8) protein_coding-promoter-TSS (ENSMUSG00000021025.8) -484 ENSMUSG00000021025.8 ENSMUSG00000021025 ENSMUST00000219869 Nfkbia protein_coding Interval_75231 chr17 64959121 64959399 + 0 NA Intergenic Intergenic -14408 ENSMUSG00000077691.1 ENSMUSG00000077691 ENSMUST00000104503 Gm25344 snoRNA Interval_157857 chr8 75007245 75008148 + 0 NA intron (ENSMUSG00000034518.14, intron 6 of 11) protein_coding-intron (ENSMUSG00000034518.14, intron 5 of 10) 7827 ENSMUSG00000034518.14 ENSMUSG00000034518 ENSMUST00000129391 Hmgxb4 protein_coding Interval_104629 chr3 68951717 68952479 + 0 NA intron (ENSMUSG00000027778.15, intron 8 of 19) protein_coding-intron (ENSMUSG00000027778.15, intron 7 of 18) -34775 ENSMUSG00000111756.1 ENSMUSG00000111756 ENSMUST00000217619 Gm48183 TEC Interval_19877 chr10 110803605 110804434 + 0 NA intron (ENSMUSG00000101801.6, intron 2 of 2) antisense-intron (ENSMUSG00000101801.6, intron 2 of 2) 7846 ENSMUSG00000089461.1 ENSMUSG00000089461 ENSMUST00000158836 Gm23698 snoRNA Interval_66564 chr16 35145989 35147355 + 0 NA Intergenic Intergenic 88251 ENSMUSG00000084581.1 ENSMUSG00000084581 ENSMUST00000122632 Gm25179 snRNA Interval_45822 chr13 58337460 58337747 + 0 NA exon (ENSMUSG00000060176.4, exon 4 of 17) protein_coding-exon (ENSMUSG00000060176.4, exon 4 of 17) 12336 ENSMUSG00000077428.1 ENSMUSG00000077428 ENSMUST00000104240 Gm24284 snoRNA Interval_18465 chr10 86356981 86357248 + 0 NA intron (ENSMUSG00000059602.14, intron 4 of 8) protein_coding-intron (ENSMUSG00000059602.14, intron 4 of 13) 56560 ENSMUSG00000020044.13 ENSMUSG00000020044 ENSMUST00000132307 Timp3 protein_coding Interval_65255 chr16 20903177 20904153 + 0 NA Intergenic Intergenic -10106 ENSMUSG00000116850.1 ENSMUSG00000116850 ENSMUST00000232124 Gm49742 lincRNA Interval_74417 chr17 50070068 50070316 + 0 NA intron (ENSMUSG00000039316.14, intron 4 of 6) protein_coding-intron (ENSMUSG00000039316.14, intron 4 of 9) -43827 ENSMUSG00000117117.1 ENSMUSG00000117117 ENSMUST00000233275 Gm49901 lincRNA Interval_19449 chr10 99408955 99409212 + 0 NA intron (ENSMUSG00000044633.4, intron 2 of 2) lincRNA-intron (ENSMUSG00000044633.4, intron 2 of 2) -34961 ENSMUSG00000090665.2 ENSMUSG00000090665 ENSMUST00000167243 Gad1-ps processed_pseudogene Interval_33661 chr11 117786308 117786672 + 0 NA exon (ENSMUSG00000050106.17, exon 8 of 16) protein_coding-exon (ENSMUSG00000050106.17, exon 8 of 16) -1435 ENSMUSG00000087486.1 ENSMUSG00000087486 ENSMUST00000155505 Gm11723 antisense Interval_158550 chr8 84407214 84408658 + 0 NA intron (ENSMUSG00000034656.18, intron 1 of 5) protein_coding-intron (ENSMUSG00000034656.18, intron 1 of 5) -27355 ENSMUSG00000064392.1 ENSMUSG00000064392 ENSMUST00000082458 Gm23626 snoRNA Interval_167108 chr9 65338837 65339965 + 0 NA intron (ENSMUSG00000111712.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000111712.1, intron 1 of 1) -2504 ENSMUSG00000111725.1 ENSMUSG00000111725 ENSMUST00000215863 Gm19219 processed_pseudogene Interval_83905 chr19 5487770 5489468 + 0 NA promoter-TSS (ENSMUSG00000024906.10) protein_coding-promoter-TSS (ENSMUSG00000024906.10) 579 ENSMUSG00000117966.1 ENSMUSG00000117966 ENSMUST00000236526 1700061A03Rik TEC Interval_132281 chr5 143916506 143916701 + 0 NA intron (ENSMUSG00000079109.11, intron 6 of 14) protein_coding-intron (ENSMUSG00000079109.11, intron 6 of 13) 6639 ENSMUSG00000079109.11 ENSMUSG00000079109 ENSMUST00000164999 Pms2 protein_coding Interval_88663 chr2 9222721 9223484 + 0 NA Intergenic Intergenic 17730 ENSMUSG00000095951.1 ENSMUSG00000095951 ENSMUST00000179603 Gm23963 miRNA Interval_109386 chr3 141374087 141374484 + 0 NA Intergenic Intergenic 91048 ENSMUSG00000089737.1 ENSMUSG00000089737 ENSMUST00000161394 Gm15688 antisense Interval_160547 chr8 110556083 110556341 + 0 NA TTS (ENSMUSG00000105825.1) miRNA-TTS (ENSMUSG00000105825.1) 650 ENSMUSG00000105825.1 ENSMUSG00000105825 ENSMUST00000104619 Gm44489 miRNA Interval_64901 chr16 17085535 17085736 + 0 NA TTS (ENSMUSG00000022771.17) protein_coding-TTS (ENSMUSG00000022771.17) -2944 ENSMUSG00000055497.5 ENSMUSG00000055497 ENSMUST00000120357 Gm9974 processed_pseudogene Interval_73931 chr17 45548475 45550061 + 0 NA intron (ENSMUSG00000096847.2, intron 1 of 2) protein_coding-intron (ENSMUSG00000096847.2, intron 1 of 2) 409 ENSMUSG00000096847.2 ENSMUSG00000096847 ENSMUST00000180252 Tmem151b protein_coding Interval_148428 chr7 81191241 81191810 + 0 NA Intergenic Intergenic -13485 ENSMUSG00000109323.1 ENSMUSG00000109323 ENSMUST00000207652 Gm44968 lincRNA Interval_124360 chr5 44643008 44643355 + 0 NA intron (ENSMUSG00000104894.4, intron 1 of 4) protein_coding-intron (ENSMUSG00000039706.11, intron 2 of 7) -8486 ENSMUSG00000104894.4 ENSMUSG00000104894 ENSMUST00000200281 Gm43507 antisense Interval_57703 chr15 16161206 16161537 + 0 NA Intergenic Intergenic 46582 ENSMUSG00000115434.1 ENSMUSG00000115434 ENSMUST00000227564 Gm6479 processed_pseudogene Interval_24836 chr11 40151743 40152115 + 0 NA intron (ENSMUSG00000085301.1, intron 5 of 7) lincRNA-intron (ENSMUSG00000085301.1, intron 5 of 7) 143735 ENSMUSG00000085301.1 ENSMUSG00000085301 ENSMUST00000130945 Gm12132 lincRNA Interval_65474 chr16 22571686 22573416 + 0 NA intron (ENSMUSG00000022861.17, intron 11 of 23) protein_coding-intron (ENSMUSG00000022861.17, intron 11 of 23) -22478 ENSMUSG00000084511.1 ENSMUSG00000084511 ENSMUST00000122562 Gm22481 misc_RNA Interval_120512 chr4 149075830 149076641 + 0 NA intron (ENSMUSG00000028975.16, intron 1 of 3) protein_coding-intron (ENSMUSG00000028975.16, intron 1 of 8) -20148 ENSMUSG00000081086.1 ENSMUSG00000081086 ENSMUST00000118516 Gm9506 processed_pseudogene Interval_38316 chr12 77095954 77096158 + 0 NA Intergenic Intergenic 20376 ENSMUSG00000093114.1 ENSMUSG00000093114 ENSMUST00000175373 Gm22696 miRNA Interval_28140 chr11 73114722 73115141 + 0 NA exon (ENSMUSG00000005947.11, exon 9 of 31) protein_coding-exon (ENSMUSG00000005947.11, exon 9 of 31) 23363 ENSMUSG00000050107.2 ENSMUSG00000050107 ENSMUST00000052140 Haspin protein_coding Interval_106355 chr3 95581833 95582666 + 0 NA intron (ENSMUSG00000028109.14, intron 13 of 14) protein_coding-intron (ENSMUSG00000028109.14, intron 13 of 14) -6722 ENSMUSG00000105460.1 ENSMUSG00000105460 ENSMUST00000198013 Gm42671 TEC Interval_5279 chr1 87206077 87206796 + 0 NA intron (ENSMUSG00000026253.14, intron 2 of 5) protein_coding-intron (ENSMUSG00000026253.14, intron 2 of 11) 362 ENSMUSG00000026253.14 ENSMUSG00000026253 ENSMUST00000189392 Chrng protein_coding Interval_94199 chr2 85036585 85038321 + 0 NA promoter-TSS (ENSMUSG00000027071.14) protein_coding-promoter-TSS (ENSMUSG00000027071.14) 2 ENSMUSG00000027067.16 ENSMUSG00000027067 ENSMUST00000127069 Ssrp1 protein_coding Interval_165878 chr9 54163100 54163909 + 0 NA Intergenic Intergenic 18570 ENSMUSG00000032274.9 ENSMUSG00000032274 ENSMUST00000216974 Cyp19a1 protein_coding Interval_68718 chr16 84962087 84963338 + 0 NA intron (ENSMUSG00000022892.11, intron 13 of 13) protein_coding-intron (ENSMUSG00000022892.11, intron 15 of 15) -9502 ENSMUSG00000115518.1 ENSMUSG00000115518 ENSMUST00000227835 Gm10791 antisense Interval_89135 chr2 17153918 17154389 + 0 NA Intergenic Intergenic -15072 ENSMUSG00000081525.1 ENSMUSG00000081525 ENSMUST00000118746 Gm13325 processed_pseudogene Interval_170636 chr9 109804643 109805377 + 0 NA Intergenic Intergenic -7270 ENSMUSG00000050074.12 ENSMUSG00000050074 ENSMUST00000118732 Spink8 protein_coding Interval_160272 chr8 107594448 107596107 + 0 NA Intergenic Intergenic -6819 ENSMUSG00000039067.5 ENSMUSG00000039067 ENSMUST00000213080 Psmd7 protein_coding Interval_91278 chr2 37338807 37339029 + 0 NA Intergenic Intergenic 12403 ENSMUSG00000049018.8 ENSMUSG00000049018 ENSMUST00000053990 Olfr368 protein_coding Interval_133452 chr6 5198813 5199189 + 0 NA Intergenic Intergenic -5217 ENSMUSG00000002588.13 ENSMUSG00000002588 ENSMUST00000176933 Pon1 protein_coding Interval_40082 chr12 101056138 101056589 + 0 NA TTS (ENSMUSG00000041846.15) protein_coding-TTS (ENSMUSG00000041846.15) -12818 ENSMUSG00000041846.15 ENSMUSG00000041846 ENSMUST00000222302 Ppp4r3a protein_coding Interval_119354 chr4 137100344 137100746 + 0 NA Intergenic Intergenic 17037 ENSMUSG00000085542.1 ENSMUSG00000085542 ENSMUST00000132824 1700037C06Rik lincRNA Interval_117351 chr4 123171641 123172754 + 0 NA Intergenic Intergenic -11532 ENSMUSG00000046093.9 ENSMUSG00000046093 ENSMUST00000152194 Hpcal4 protein_coding Interval_10405 chr1 170513481 170513691 + 0 NA intron (ENSMUSG00000038473.14, intron 2 of 7) protein_coding-intron (ENSMUSG00000038473.14, intron 2 of 3) -117335 ENSMUSG00000102193.1 ENSMUSG00000102193 ENSMUST00000194441 Gm7299 processed_pseudogene Interval_9990 chr1 164656074 164656897 + 0 NA intron (ENSMUSG00000102897.1, intron 2 of 3) lincRNA-intron (ENSMUSG00000103383.1, intron 4 of 4) 24728 ENSMUSG00000103383.1 ENSMUSG00000103383 ENSMUST00000194406 Gm37754 lincRNA Interval_48537 chr13 99930700 99932416 + 0 NA Intergenic Intergenic -30467 ENSMUSG00000021647.7 ENSMUSG00000021647 ENSMUST00000224142 Cartpt protein_coding Interval_163645 chr9 23035451 23036582 + 0 NA Intergenic Intergenic -187270 ENSMUSG00000031963.8 ENSMUSG00000031963 ENSMUST00000214050 Bmper protein_coding Interval_90145 chr2 28519864 28520483 + 0 NA intron (ENSMUSG00000026821.16, intron 1 of 3) protein_coding-intron (ENSMUSG00000026821.16, intron 1 of 17) -7677 ENSMUSG00000026821.16 ENSMUSG00000026821 ENSMUST00000140704 Ralgds protein_coding Interval_53890 chr14 63149584 63149851 + 0 NA intron (ENSMUSG00000021273.11, intron 6 of 6) protein_coding-intron (ENSMUSG00000021273.11, intron 7 of 7) 15208 ENSMUSG00000021273.11 ENSMUSG00000021273 ENSMUST00000224267 Fdft1 protein_coding Interval_35395 chr12 21299916 21300399 + 0 NA TTS (ENSMUSG00000054309.9) protein_coding-TTS (ENSMUSG00000054309.9) 12230 ENSMUSG00000070166.1 ENSMUSG00000070166 ENSMUST00000093657 Gm25821 snoRNA Interval_119258 chr4 136496345 136496553 + 0 NA intron (ENSMUSG00000001089.14, intron 1 of 1) protein_coding-intron (ENSMUSG00000001089.14, intron 1 of 3) 26688 ENSMUSG00000001089.14 ENSMUSG00000001089 ENSMUST00000168936 Luzp1 protein_coding Interval_168222 chr9 78024602 78025231 + 0 NA Intergenic Intergenic -3029 ENSMUSG00000111850.1 ENSMUSG00000111850 ENSMUST00000216404 Gm47829 processed_pseudogene Interval_141651 chr6 132022800 132023002 + 0 NA Intergenic Intergenic 33612 ENSMUSG00000108245.1 ENSMUSG00000108245 ENSMUST00000204675 Prb3-ps processed_pseudogene Interval_97843 chr2 144388201 144388662 + 0 NA promoter-TSS (ENSMUSG00000027425.18) protein_coding-promoter-TSS (ENSMUSG00000027425.18) 19435 ENSMUSG00000098387.2 ENSMUSG00000098387 ENSMUST00000183618 Pet117 protein_coding Interval_156221 chr8 46204452 46205310 + 0 NA Intergenic Intergenic 6149 ENSMUSG00000031633.4 ENSMUSG00000031633 ENSMUST00000155986 Slc25a4 protein_coding Interval_136749 chr6 58991031 58991319 + 0 NA intron (ENSMUSG00000092323.1, intron 2 of 3) protein_coding-intron (ENSMUSG00000037709.13, intron 2 of 17) 17978 ENSMUSG00000108075.1 ENSMUSG00000108075 ENSMUST00000204395 Gm45061 TEC Interval_41428 chr12 113795999 113796389 + 0 NA TTS (ENSMUSG00000076646.3) IG_V_gene-TTS (ENSMUSG00000076646.3) 373 ENSMUSG00000076646.3 ENSMUSG00000076646 ENSMUST00000103455 Ighv2-6-8 IG_V_gene Interval_24495 chr11 33721237 33721731 + 0 NA intron (ENSMUSG00000053519.17, intron 1 of 8) protein_coding-intron (ENSMUSG00000053519.17, intron 1 of 7) 15934 ENSMUSG00000087328.1 ENSMUSG00000087328 ENSMUST00000125068 Gm12120 antisense Interval_22464 chr11 10549382 10549685 + 0 NA Intergenic Intergenic -172451 ENSMUSG00000084045.1 ENSMUSG00000084045 ENSMUST00000118697 Gm11997 processed_pseudogene Interval_137677 chr6 78899795 78900119 + 0 NA Intergenic Intergenic -11210 ENSMUSG00000094980.1 ENSMUSG00000094980 ENSMUST00000083352 Gm23727 snRNA Interval_45370 chr13 54686690 54688567 + 0 NA promoter-TSS (ENSMUSG00000034928.16) protein_coding-promoter-TSS (ENSMUSG00000034928.16) 180 ENSMUSG00000034928.16 ENSMUSG00000034928 ENSMUST00000150626 Rnf44 protein_coding Interval_140573 chr6 119691037 119691820 + 0 NA intron (ENSMUSG00000030172.15, intron 11 of 15) protein_coding-intron (ENSMUSG00000030172.15, intron 15 of 18) -69323 ENSMUSG00000030172.15 ENSMUSG00000030172 ENSMUST00000183741 Erc1 protein_coding Interval_150530 chr7 112097862 112099392 + 0 NA intron (ENSMUSG00000059263.9, intron 21 of 28) protein_coding-intron (ENSMUSG00000059263.9, intron 20 of 27) 60430 ENSMUSG00000030772.6 ENSMUSG00000030772 ENSMUST00000033036 Dkk3 protein_coding Interval_163876 chr9 27389259 27389455 + 0 NA Intergenic Intergenic 3090 ENSMUSG00000110920.1 ENSMUSG00000110920 ENSMUST00000215351 Gm48858 processed_pseudogene Interval_122124 chr5 17607837 17609907 + 0 NA intron (ENSMUSG00000028780.13, intron 2 of 7) protein_coding-intron (ENSMUSG00000028780.13, intron 2 of 17) 34106 ENSMUSG00000028780.13 ENSMUSG00000028780 ENSMUST00000115271 Sema3c protein_coding Interval_82211 chr18 69152342 69153323 + 0 NA Intergenic Intergenic 21288 ENSMUSG00000088166.1 ENSMUSG00000088166 ENSMUST00000157541 Gm23536 rRNA Interval_13678 chr10 20951949 20953046 + 0 NA promoter-TSS (ENSMUSG00000019986.17) protein_coding-promoter-TSS (ENSMUSG00000019986.17) -73524 ENSMUSG00000111177.1 ENSMUSG00000111177 ENSMUST00000213102 Rps2-ps3 processed_pseudogene Interval_54702 chr14 73476483 73477426 + 0 NA Intergenic Intergenic -16139 ENSMUSG00000115530.1 ENSMUSG00000115530 ENSMUST00000226353 Gm4266 processed_pseudogene Interval_131669 chr5 139178817 139179643 + 0 NA intron (ENSMUSG00000025857.10, intron 10 of 12) protein_coding-intron (ENSMUSG00000025857.10, intron 10 of 12) -28537 ENSMUSG00000086873.1 ENSMUSG00000086873 ENSMUST00000151512 Gm15672 processed_transcript Interval_124709 chr5 53493209 53493410 + 0 NA intron (ENSMUSG00000039191.12, intron 1 of 6) protein_coding-intron (ENSMUSG00000039191.12, intron 1 of 6) 29422 ENSMUSG00000106807.1 ENSMUSG00000106807 ENSMUST00000200950 Gm10441 antisense Interval_173361 chrX 84808219 84808482 + 0 NA intron (ENSMUSG00000045103.19, intron 29 of 50) protein_coding-intron (ENSMUSG00000045103.19, intron 57 of 78) -71537 ENSMUSG00000084281.1 ENSMUSG00000084281 ENSMUST00000122197 Gm14770 processed_pseudogene Interval_70180 chr17 5992890 5993521 + 0 NA intron (ENSMUSG00000023805.17, intron 2 of 16) protein_coding-intron (ENSMUSG00000023805.17, intron 3 of 25) -14829 ENSMUSG00000023805.17 ENSMUSG00000023805 ENSMUST00000126881 Synj2 protein_coding Interval_88494 chr2 5613381 5614918 + 0 NA intron (ENSMUSG00000039145.16, intron 1 of 1) protein_coding-intron (ENSMUSG00000039145.16, intron 1 of 10) 10578 ENSMUSG00000082013.1 ENSMUSG00000082013 ENSMUST00000117145 Gm13216 processed_pseudogene Interval_127219 chr5 101521256 101521551 + 0 NA Intergenic Intergenic -15074 ENSMUSG00000106610.1 ENSMUSG00000106610 ENSMUST00000199021 Gm43103 processed_pseudogene Interval_54583 chr14 70804699 70804892 + 0 NA Intergenic Intergenic 28916 ENSMUSG00000022102.13 ENSMUSG00000022102 ENSMUST00000164691 Dok2 protein_coding Interval_87555 chr19 53415226 53415540 + 0 NA Intergenic Intergenic 24594 ENSMUSG00000117768.1 ENSMUSG00000117768 ENSMUST00000238029 8030456M14Rik bidirectional_promoter_lncRNA Interval_150049 chr7 105402362 105402930 + 0 NA TTS (ENSMUSG00000110366.1) bidirectional_promoter_lncRNA-TTS (ENSMUSG00000110366.1) -1976 ENSMUSG00000030897.5 ENSMUSG00000030897 ENSMUST00000210344 Cnga4 protein_coding Interval_138026 chr6 84365045 84365694 + 0 NA Intergenic Intergenic 58469 ENSMUSG00000107797.1 ENSMUSG00000107797 ENSMUST00000203521 Gm10445 lincRNA Interval_156541 chr8 50293203 50294014 + 0 NA intron (ENSMUSG00000109741.1, intron 3 of 3) lincRNA-intron (ENSMUSG00000109741.1, intron 3 of 3) -74504 ENSMUSG00000110281.1 ENSMUSG00000110281 ENSMUST00000210011 Gm2516 lincRNA Interval_105493 chr3 87009144 87009515 + 0 NA Intergenic Intergenic -9988 ENSMUSG00000028076.12 ENSMUSG00000028076 ENSMUST00000142793 Cd1d1 protein_coding Interval_23620 chr11 23894285 23895589 + 0 NA intron (ENSMUSG00000084769.1, intron 2 of 2) protein_coding-intron (ENSMUSG00000020273.13, intron 1 of 21) 377 ENSMUSG00000084769.1 ENSMUSG00000084769 ENSMUST00000151881 Gm12061 antisense Interval_83662 chr19 3554329 3555478 + 0 NA intron (ENSMUSG00000024908.15, intron 1 of 3) protein_coding-intron (ENSMUSG00000024908.15, intron 1 of 22) 20819 ENSMUSG00000024908.15 ENSMUSG00000024908 ENSMUST00000226109 Ppp6r3 protein_coding Interval_41773 chr12 118930324 118931446 + 0 NA intron (ENSMUSG00000072791.11, intron 11 of 27) protein_coding-intron (ENSMUSG00000072791.11, intron 11 of 27) -40126 ENSMUSG00000072791.11 ENSMUSG00000072791 ENSMUST00000100982 Abcb5 protein_coding Interval_55527 chr14 90789431 90789808 + 0 NA Intergenic Intergenic 70065 ENSMUSG00000115565.1 ENSMUSG00000115565 ENSMUST00000226394 Gm18082 processed_pseudogene Interval_29571 chr11 84985333 84985758 + 0 NA TTS (ENSMUSG00000000804.14) protein_coding-TTS (ENSMUSG00000000804.14) 27720 ENSMUSG00000000805.18 ENSMUSG00000000805 ENSMUST00000108076 Car4 protein_coding Interval_172717 chrX 47891415 47892669 + 0 NA intron (ENSMUSG00000031099.16, intron 2 of 2) protein_coding-intron (ENSMUSG00000031099.16, intron 1 of 23) 899 ENSMUSG00000031099.16 ENSMUSG00000031099 ENSMUST00000140756 Smarca1 protein_coding Interval_112308 chr4 40257953 40258531 + 0 NA Intergenic Intergenic -11542 ENSMUSG00000028407.4 ENSMUSG00000028407 ENSMUST00000207780 Smim27 protein_coding Interval_9394 chr1 156764452 156766606 + 0 NA Intergenic Intergenic -27983 ENSMUSG00000046057.4 ENSMUSG00000046057 ENSMUST00000121352 Gm15428 processed_pseudogene Interval_134224 chr6 23207726 23208283 + 0 NA Intergenic Intergenic 40358 ENSMUSG00000029697.6 ENSMUSG00000029697 ENSMUST00000031709 Fezf1 protein_coding Interval_11406 chr1 181758562 181758908 + 0 NA intron (ENSMUSG00000047369.17, intron 65 of 84) protein_coding-intron (ENSMUSG00000047369.17, intron 9 of 11) 54965 ENSMUSG00000064970.1 ENSMUSG00000064970 ENSMUST00000083036 Gm23690 snRNA Interval_50977 chr14 21456670 21457363 + 0 NA intron (ENSMUSG00000114875.1, intron 1 of 2) processed_transcript-intron (ENSMUSG00000114875.1, intron 1 of 2) 6542 ENSMUSG00000088873.1 ENSMUSG00000088873 ENSMUST00000158248 Gm25864 snRNA Interval_94196 chr2 85019106 85019599 + 0 NA intron (ENSMUSG00000027071.14, intron 7 of 10) protein_coding-intron (ENSMUSG00000027071.14, intron 8 of 11) 13958 ENSMUSG00000027071.14 ENSMUSG00000027071 ENSMUST00000127839 P2rx3 protein_coding Interval_89525 chr2 21794892 21795136 + 0 NA promoter-TSS (ENSMUSG00000077572.1) snoRNA-promoter-TSS (ENSMUSG00000077572.1) 41 ENSMUSG00000077572.1 ENSMUSG00000077572 ENSMUST00000104384 Gm24886 snoRNA Interval_70501 chr17 11066842 11068862 + 0 NA intron (ENSMUSG00000023826.16, intron 2 of 6) protein_coding-intron (ENSMUSG00000023826.16, intron 2 of 6) 21616 ENSMUSG00000100402.1 ENSMUSG00000100402 ENSMUST00000190466 Gm28505 antisense Interval_55144 chr14 78627437 78628267 + 0 NA intron (ENSMUSG00000034731.11, intron 2 of 27) protein_coding-intron (ENSMUSG00000034731.11, intron 4 of 28) 1422 ENSMUSG00000034731.11 ENSMUSG00000034731 ENSMUST00000227820 Dgkh protein_coding Interval_69150 chr16 90985856 90986078 + 0 NA intron (ENSMUSG00000085279.1, intron 1 of 1) protein_coding-intron (ENSMUSG00000022973.18, intron 6 of 18) 2060 ENSMUSG00000085279.1 ENSMUSG00000085279 ENSMUST00000123318 Gm15965 antisense Interval_40715 chr12 107879637 107880438 + 0 NA Intergenic Intergenic -95996 ENSMUSG00000086975.1 ENSMUSG00000086975 ENSMUST00000134448 Gm15208 lincRNA Interval_173304 chrX 77616142 77616353 + 0 NA intron (ENSMUSG00000025246.13, intron 2 of 12) protein_coding-intron (ENSMUSG00000025246.13, intron 1 of 15) 36760 ENSMUSG00000088278.1 ENSMUSG00000088278 ENSMUST00000157653 Gm23121 snRNA Interval_117527 chr4 124376763 124376987 + 0 NA Intergenic Intergenic -41194 ENSMUSG00000088933.1 ENSMUSG00000088933 ENSMUST00000158308 Gm22983 snRNA Interval_11999 chr1 188668331 188668832 + 0 NA intron (ENSMUSG00000026609.15, intron 12 of 12) protein_coding-intron (ENSMUSG00000026609.15, intron 36 of 70) -45528 ENSMUSG00000077235.1 ENSMUSG00000077235 ENSMUST00000104047 Gm25095 snoRNA Interval_80081 chr18 37356323 37357513 + 0 NA TTS (ENSMUSG00000045876.4) protein_coding-TTS (ENSMUSG00000045876.4) 1797 ENSMUSG00000045876.4 ENSMUSG00000045876 ENSMUST00000051163 Pcdhb8 protein_coding Interval_25215 chr11 45449200 45449423 + 0 NA Intergenic Intergenic -28527 ENSMUSG00000085476.1 ENSMUSG00000085476 ENSMUST00000123422 Gm12162 lincRNA Interval_17894 chr10 80644690 80645370 + 0 NA promoter-TSS (ENSMUSG00000003344.14) protein_coding-promoter-TSS (ENSMUSG00000003344.14) 2680 ENSMUSG00000003344.14 ENSMUSG00000003344 ENSMUST00000131876 Btbd2 protein_coding Interval_3336 chr1 57044887 57045185 + 0 NA intron (ENSMUSG00000087022.4, intron 2 of 2) processed_transcript-intron (ENSMUSG00000087022.4, intron 2 of 2) -45761 ENSMUSG00000094128.1 ENSMUSG00000094128 ENSMUST00000179712 Gm23943 miRNA Interval_47622 chr13 90205878 90206975 + 0 NA intron (ENSMUSG00000114541.1, intron 3 of 5) lincRNA-intron (ENSMUSG00000114541.1, intron 3 of 5) 10716 ENSMUSG00000114541.1 ENSMUSG00000114541 ENSMUST00000225610 Gm29680 lincRNA Interval_58553 chr15 36024464 36024905 + 0 NA intron (ENSMUSG00000037627.16, intron 2 of 6) protein_coding-intron (ENSMUSG00000037627.16, intron 22 of 27) -4214 ENSMUSG00000088786.1 ENSMUSG00000088786 ENSMUST00000158161 Gm25372 misc_RNA Interval_113887 chr4 59599740 59600041 + 0 NA intron (ENSMUSG00000028383.17, intron 3 of 3) protein_coding-intron (ENSMUSG00000028383.17, intron 6 of 10) 5580 ENSMUSG00000028383.17 ENSMUSG00000028383 ENSMUST00000128792 Hsdl2 protein_coding Interval_140320 chr6 116460564 116461576 + 0 NA promoter-TSS (ENSMUSG00000025701.12) protein_coding-promoter-TSS (ENSMUSG00000025701.12) -46 ENSMUSG00000025701.12 ENSMUSG00000025701 ENSMUST00000167174 Alox5 protein_coding Interval_8773 chr1 150877865 150878705 + 0 NA intron (ENSMUSG00000066842.18, intron 1 of 1) protein_coding-intron (ENSMUSG00000066842.18, intron 1 of 106) -122755 ENSMUSG00000099622.1 ENSMUSG00000099622 ENSMUST00000191173 Gm29188 lincRNA Interval_64592 chr16 13556454 13557387 + 0 NA intron (ENSMUSG00000022685.9, intron 23 of 23) protein_coding-intron (ENSMUSG00000022685.9, intron 22 of 23) -25369 ENSMUSG00000077488.1 ENSMUSG00000077488 ENSMUST00000104300 Gm25276 snoRNA Interval_169579 chr9 99248446 99248995 + 0 NA intron (ENSMUSG00000056267.14, intron 2 of 15) protein_coding-intron (ENSMUSG00000056267.14, intron 2 of 17) -5115 ENSMUSG00000103638.1 ENSMUSG00000103638 ENSMUST00000195852 Gm38327 TEC Interval_67065 chr16 42444857 42445549 + 0 NA Intergenic Intergenic -141734 ENSMUSG00000098300.1 ENSMUSG00000098300 ENSMUST00000184886 Mir6540 miRNA Interval_71314 chr17 22136838 22137149 + 0 NA Intergenic Intergenic 29197 ENSMUSG00000063383.5 ENSMUSG00000063383 ENSMUST00000080249 Zfp947 protein_coding Interval_47373 chr13 82255093 82255545 + 0 NA intron (ENSMUSG00000114461.1, intron 2 of 2) lincRNA-intron (ENSMUSG00000114461.1, intron 2 of 2) 124324 ENSMUSG00000114932.1 ENSMUSG00000114932 ENSMUST00000224376 Gm4936 processed_pseudogene Interval_159036 chr8 88991137 88992598 + 0 NA Intergenic Intergenic -32868 ENSMUSG00000099078.1 ENSMUSG00000099078 ENSMUST00000183771 Mir8110 miRNA Interval_113825 chr4 59153866 59154754 + 0 NA Intergenic Intergenic 8846 ENSMUSG00000082978.1 ENSMUSG00000082978 ENSMUST00000118446 Rpsa-ps11 processed_pseudogene Interval_65981 chr16 30686594 30688402 + 0 NA Intergenic Intergenic 87775 ENSMUSG00000046546.3 ENSMUSG00000046546 ENSMUST00000059078 Fam43a protein_coding Interval_102124 chr3 18180853 18181042 + 0 NA intron (ENSMUSG00000039519.6, intron 1 of 5) protein_coding-intron (ENSMUSG00000039519.6, intron 1 of 5) -3322 ENSMUSG00000096391.1 ENSMUSG00000096391 ENSMUST00000083241 Gm23686 snRNA Interval_115139 chr4 91363714 91366113 + 0 NA promoter-TSS (ENSMUSG00000083377.1) processed_pseudogene-promoter-TSS (ENSMUSG00000083377.1) -466 ENSMUSG00000083377.1 ENSMUSG00000083377 ENSMUST00000117778 Gm12653 processed_pseudogene Interval_173461 chrX 94152126 94152726 + 0 NA Intergenic Intergenic -29051 ENSMUSG00000079509.10 ENSMUSG00000079509 ENSMUST00000130312 Zfx protein_coding Interval_94838 chr2 96085169 96085423 + 0 NA Intergenic Intergenic -48139 ENSMUSG00000082327.1 ENSMUSG00000082327 ENSMUST00000120750 Gm13801 processed_pseudogene Interval_84397 chr19 10613691 10613964 + 0 NA intron (ENSMUSG00000024740.10, intron 3 of 4) protein_coding-intron (ENSMUSG00000024740.10, intron 7 of 26) -5167 ENSMUSG00000024740.10 ENSMUSG00000024740 ENSMUST00000236279 Ddb1 protein_coding Interval_87784 chr19 55857521 55857809 + 0 NA intron (ENSMUSG00000024985.20, intron 5 of 14) protein_coding-intron (ENSMUSG00000024985.20, intron 4 of 11) 15993 ENSMUSG00000099746.1 ENSMUSG00000099746 ENSMUST00000190974 Ppnr sense_intronic Interval_98 GL456221.1 131868 132039 + 0 NA NA NA NA NA Interval_63746 chr15 103213727 103214060 + 0 NA intron (ENSMUSG00000009575.14, intron 1 of 4) protein_coding-intron (ENSMUSG00000009575.14, intron 1 of 4) 1473 ENSMUSG00000009575.14 ENSMUSG00000009575 ENSMUST00000127191 Cbx5 protein_coding Interval_54487 chr14 70180862 70181501 + 0 NA exon (ENSMUSG00000022091.6, exon 21 of 21) protein_coding-exon (ENSMUSG00000022091.6, exon 21 of 21) -4362 ENSMUSG00000022090.10 ENSMUSG00000022090 ENSMUST00000123125 Pdlim2 protein_coding Interval_66560 chr16 35102925 35103158 + 0 NA intron (ENSMUSG00000035376.10, intron 6 of 6) protein_coding-intron (ENSMUSG00000035376.10, intron 6 of 6) 54426 ENSMUSG00000035376.10 ENSMUSG00000035376 ENSMUST00000231556 Hacd2 protein_coding Interval_68869 chr16 87712929 87713938 + 0 NA intron (ENSMUSG00000025612.5, intron 1 of 2) protein_coding-intron (ENSMUSG00000025612.5, intron 1 of 4) 14429 ENSMUSG00000025612.5 ENSMUSG00000025612 ENSMUST00000156958 Bach1 protein_coding Interval_112319 chr4 40357378 40357991 + 0 NA Intergenic Intergenic 44452 ENSMUSG00000087137.1 ENSMUSG00000087137 ENSMUST00000144039 4930509K18Rik lincRNA Interval_146489 chr7 46321173 46323048 + 0 NA Intergenic Intergenic 27263 ENSMUSG00000109962.1 ENSMUSG00000109962 ENSMUST00000210215 1700025L06Rik lincRNA Interval_96123 chr2 119914091 119914460 + 0 NA intron (ENSMUSG00000033943.15, intron 2 of 20) protein_coding-intron (ENSMUSG00000033943.15, intron 2 of 24) 16970 ENSMUSG00000033943.15 ENSMUSG00000033943 ENSMUST00000131396 Mga protein_coding Interval_84356 chr19 10345470 10346331 + 0 NA Intergenic Intergenic -43583 ENSMUSG00000024743.16 ENSMUSG00000024743 ENSMUST00000235717 Syt7 protein_coding Interval_108223 chr3 122597401 122597957 + 0 NA intron (ENSMUSG00000039735.16, intron 1 of 14) protein_coding-intron (ENSMUSG00000039735.16, intron 1 of 13) -20607 ENSMUSG00000106364.1 ENSMUSG00000106364 ENSMUST00000195964 Gm42994 TEC Interval_168181 chr9 77795056 77795441 + 0 NA TTS (ENSMUSG00000032350.9) protein_coding-TTS (ENSMUSG00000032350.9) 14545 ENSMUSG00000111253.1 ENSMUSG00000111253 ENSMUST00000217012 Gm34654 lincRNA Interval_66668 chr16 35990082 35990740 + 0 NA intron (ENSMUSG00000022905.12, intron 1 of 4) protein_coding-intron (ENSMUSG00000022905.12, intron 1 of 13) -9330 ENSMUSG00000086324.8 ENSMUSG00000086324 ENSMUST00000144134 Gm15564 antisense Interval_154075 chr8 12501992 12503567 + 0 NA promoter-TSS (ENSMUSG00000109582.1) lincRNA-promoter-TSS (ENSMUSG00000109582.1) -120 ENSMUSG00000109582.1 ENSMUSG00000109582 ENSMUST00000211062 4933439N14Rik lincRNA Interval_138584 chr6 89608021 89608443 + 0 NA Intergenic Intergenic -12628 ENSMUSG00000030086.16 ENSMUSG00000030086 ENSMUST00000204654 Chchd6 protein_coding Interval_134732 chr6 31048607 31049588 + 0 NA Intergenic Intergenic 13650 ENSMUSG00000065610.1 ENSMUSG00000065610 ENSMUST00000083676 Mir29a miRNA Interval_50983 chr14 21484622 21487727 + 0 NA intron (ENSMUSG00000021767.19, intron 1 of 5) protein_coding-intron (ENSMUSG00000021767.19, intron 1 of 1) -12814 ENSMUSG00000114875.1 ENSMUSG00000114875 ENSMUST00000225719 Gm30363 processed_transcript Interval_17243 chr10 75243769 75244247 + 0 NA TTS (ENSMUSG00000033444.14) protein_coding-TTS (ENSMUSG00000033444.14) -16959 ENSMUSG00000033444.14 ENSMUSG00000033444 ENSMUST00000218644 Specc1l protein_coding Interval_12341 chr1 192268650 192269151 + 0 NA intron (ENSMUSG00000058248.12, intron 5 of 10) protein_coding-intron (ENSMUSG00000058248.12, intron 5 of 10) 131555 ENSMUSG00000097316.2 ENSMUSG00000097316 ENSMUST00000195083 Gm10516 antisense Interval_57958 chr15 25742202 25742441 + 0 NA promoter-TSS (ENSMUSG00000022272.17) protein_coding-promoter-TSS (ENSMUSG00000022272.17) -26235 ENSMUSG00000022272.17 ENSMUSG00000022272 ENSMUST00000145587 Myo10 protein_coding Interval_56106 chr14 105826328 105826572 + 0 NA Intergenic Intergenic 9542 ENSMUSG00000092664.1 ENSMUSG00000092664 ENSMUST00000174923 Gm22406 miRNA Interval_23129 chr11 20081792 20082344 + 0 NA intron (ENSMUSG00000020152.7, intron 4 of 5) protein_coding-intron (ENSMUSG00000020152.7, intron 4 of 8) 30841 ENSMUSG00000020152.7 ENSMUSG00000020152 ENSMUST00000134779 Actr2 protein_coding Interval_89774 chr2 25364458 25366040 + 0 NA promoter-TSS (ENSMUSG00000026956.15) protein_coding-promoter-TSS (ENSMUSG00000026956.15) 366 ENSMUSG00000026956.15 ENSMUSG00000026956 ENSMUST00000152537 Uap1l1 protein_coding Interval_174142 chrX 136196982 136197424 + 0 NA Intergenic Intergenic 6434 ENSMUSG00000054034.10 ENSMUSG00000054034 ENSMUST00000131510 Tceal5 protein_coding Interval_60308 chr15 72735840 72736053 + 0 NA intron (ENSMUSG00000047921.17, intron 18 of 21) protein_coding-intron (ENSMUSG00000047921.17, intron 18 of 21) 10542 ENSMUSG00000116314.1 ENSMUSG00000116314 ENSMUST00000229330 Gm49459 processed_pseudogene Interval_8164 chr1 136178702 136179046 + 0 NA TTS (ENSMUSG00000041642.18) protein_coding-TTS (ENSMUSG00000041642.18) 18516 ENSMUSG00000041642.18 ENSMUSG00000041642 ENSMUST00000165333 Kif21b protein_coding Interval_37003 chr12 56251706 56252500 + 0 NA TTS (ENSMUSG00000077455.1) snoRNA-TTS (ENSMUSG00000077455.1) 341 ENSMUSG00000077455.1 ENSMUSG00000077455 ENSMUST00000104267 Gm25917 snoRNA Interval_4198 chr1 71580256 71580734 + 0 NA TTS (ENSMUSG00000026192.13) protein_coding-TTS (ENSMUSG00000026192.13) 23316 ENSMUSG00000026192.13 ENSMUSG00000026192 ENSMUST00000154855 Atic protein_coding Interval_144732 chr7 27860000 27861252 + 0 NA promoter-TSS (ENSMUSG00000020420.8) protein_coding-promoter-TSS (ENSMUSG00000020420.8) 3099 ENSMUSG00000020420.8 ENSMUSG00000020420 ENSMUST00000053722 Zfp607a protein_coding Interval_75241 chr17 65221216 65222665 + 0 NA Intergenic Intergenic -52737 ENSMUSG00000117336.1 ENSMUSG00000117336 ENSMUST00000233948 Gm49865 processed_pseudogene Interval_121881 chr5 9111692 9112437 + 0 NA intron (ENSMUSG00000079659.5, intron 2 of 5) protein_coding-intron (ENSMUSG00000079659.5, intron 2 of 4) -43669 ENSMUSG00000079659.5 ENSMUSG00000079659 ENSMUST00000200542 Tmem243 protein_coding Interval_1505 chr1 24347619 24348365 + 0 NA intron (ENSMUSG00000026141.13, intron 6 of 39) protein_coding-intron (ENSMUSG00000026141.13, intron 17 of 47) 104753 ENSMUSG00000026141.13 ENSMUSG00000026141 ENSMUST00000051344 Col19a1 protein_coding Interval_822 chr1 11929302 11929607 + 0 NA intron (ENSMUSG00000057715.13, intron 10 of 12) protein_coding-intron (ENSMUSG00000057715.13, intron 10 of 13) -191506 ENSMUSG00000101610.1 ENSMUSG00000101610 ENSMUST00000187748 Gm7560 processed_pseudogene Interval_159229 chr8 91992847 91993248 + 0 NA Intergenic Intergenic -1178 ENSMUSG00000109696.1 ENSMUSG00000109696 ENSMUST00000210361 Gm36670 lincRNA Interval_3683 chr1 60800989 60801726 + 0 NA intron (ENSMUSG00000085965.1, intron 3 of 3) lincRNA-intron (ENSMUSG00000085965.1, intron 3 of 3) -7759 ENSMUSG00000083355.1 ENSMUSG00000083355 ENSMUST00000122024 Gm11581 processed_pseudogene Interval_124160 chr5 38733740 38733972 + 0 NA intron (ENSMUSG00000039315.15, intron 14 of 18) protein_coding-intron (ENSMUSG00000039315.15, intron 14 of 18) -2128 ENSMUSG00000079528.9 ENSMUSG00000079528 ENSMUST00000177682 Clnkos antisense Interval_154160 chr8 13148903 13150200 + 0 NA Intergenic Intergenic 9244 ENSMUSG00000031446.14 ENSMUSG00000031446 ENSMUST00000125646 Cul4a protein_coding Interval_73374 chr17 36850877 36851140 + 0 NA exon (ENSMUSG00000024457.16, exon 3 of 10) protein_coding-exon (ENSMUSG00000024457.16, exon 3 of 10) -8656 ENSMUSG00000065651.1 ENSMUSG00000065651 ENSMUST00000083717 Gm25973 snoRNA Interval_7897 chr1 134441802 134442688 + 0 NA Intergenic Intergenic 6617 ENSMUSG00000101061.1 ENSMUSG00000101061 ENSMUST00000188474 Platr1 lincRNA Interval_125798 chr5 74216574 74216903 + 0 NA intron (ENSMUSG00000062110.14, intron 1 of 2) protein_coding-intron (ENSMUSG00000062110.14, intron 7 of 8) 18847 ENSMUSG00000049907.8 ENSMUSG00000049907 ENSMUST00000201837 Rasl11b protein_coding Interval_36302 chr12 40927214 40927447 + 0 NA Intergenic Intergenic 10042 ENSMUSG00000114166.1 ENSMUSG00000114166 ENSMUST00000221023 Gm18246 processed_pseudogene Interval_138720 chr6 91400436 91400752 + 0 NA intron (ENSMUSG00000030093.7, intron 2 of 3) protein_coding-intron (ENSMUSG00000030093.7, intron 2 of 3) -10919 ENSMUSG00000108804.1 ENSMUSG00000108804 ENSMUST00000206086 Gm30437 TEC Interval_3325 chr1 56948300 56948556 + 0 NA intron (ENSMUSG00000038331.15, intron 1 of 6) protein_coding-intron (ENSMUSG00000038331.15, intron 2 of 9) 21444 ENSMUSG00000038331.15 ENSMUSG00000038331 ENSMUST00000177282 Satb2 protein_coding Interval_46814 chr13 71074292 71074560 + 0 NA Intergenic Intergenic -2700 ENSMUSG00000102303.1 ENSMUSG00000102303 ENSMUST00000194509 Gm38191 TEC Interval_173996 chrX 127376587 127376837 + 0 NA Intergenic Intergenic -17581 ENSMUSG00000049815.3 ENSMUSG00000049815 ENSMUST00000051530 4921511C20Rik protein_coding Interval_157933 chr8 76623842 76624045 + 0 NA intron (ENSMUSG00000074235.4, intron 5 of 5) bidirectional_promoter_lncRNA-intron (ENSMUSG00000074235.4, intron 5 of 5) -4661 ENSMUSG00000099012.1 ENSMUSG00000099012 ENSMUST00000185045 Gm27355 rRNA Interval_39080 chr12 84907187 84908039 + 0 NA Intergenic Intergenic -10535 ENSMUSG00000092006.1 ENSMUSG00000092006 ENSMUST00000163802 Gm17139 antisense Interval_102758 chr3 30843882 30844133 + 0 NA Intergenic Intergenic -11986 ENSMUSG00000037661.14 ENSMUSG00000037661 ENSMUST00000147697 Gpr160 protein_coding Interval_101341 chr2 180588805 180590070 + 0 NA promoter-TSS (ENSMUSG00000049401.10) protein_coding-promoter-TSS (ENSMUSG00000049401.10) -25 ENSMUSG00000049401.10 ENSMUSG00000049401 ENSMUST00000147070 Ogfr protein_coding Interval_98853 chr2 155592199 155593191 + 0 NA promoter-TSS (ENSMUSG00000027610.17) protein_coding-promoter-TSS (ENSMUSG00000027610.17) 32 ENSMUSG00000027610.17 ENSMUSG00000027610 ENSMUST00000137305 Gss protein_coding Interval_142128 chr6 137467638 137468891 + 0 NA Intergenic Intergenic 36959 ENSMUSG00000107759.1 ENSMUSG00000107759 ENSMUST00000204925 Gm44258 sense_intronic Interval_5057 chr1 84726247 84726455 + 0 NA intron (ENSMUSG00000026219.14, intron 1 of 1) protein_coding-intron (ENSMUSG00000026219.14, intron 37 of 40) 2525 ENSMUSG00000026219.14 ENSMUSG00000026219 ENSMUST00000187818 Trip12 protein_coding Interval_163826 chr9 26947446 26948280 + 0 NA Intergenic Intergenic 14696 ENSMUSG00000111151.1 ENSMUSG00000111151 ENSMUST00000215231 Gm5120 processed_pseudogene Interval_67409 chr16 48398693 48399373 + 0 NA TTS (ENSMUSG00000110573.1) protein_coding-TTS (ENSMUSG00000110573.1) 11391 ENSMUSG00000064932.1 ENSMUSG00000064932 ENSMUST00000082998 n-R5s36 rRNA Interval_163722 chr9 24904840 24905049 + 0 NA Intergenic Intergenic -48029 ENSMUSG00000110872.1 ENSMUSG00000110872 ENSMUST00000217324 Gm48255 processed_pseudogene Interval_72660 chr17 31377952 31378415 + 0 NA Intergenic Intergenic -8074 ENSMUSG00000041119.12 ENSMUSG00000041119 ENSMUST00000236367 Pde9a protein_coding Interval_162148 chr8 125520009 125521706 + 0 NA intron (ENSMUSG00000001995.9, intron 1 of 22) protein_coding-intron (ENSMUSG00000001995.9, intron 1 of 21) 48951 ENSMUSG00000001995.9 ENSMUSG00000001995 ENSMUST00000212604 Sipa1l2 protein_coding Interval_95820 chr2 116921470 116921649 + 0 NA Intergenic Intergenic 21365 ENSMUSG00000085316.1 ENSMUSG00000085316 ENSMUST00000155323 D330050G23Rik lincRNA Interval_87580 chr19 53564401 53564709 + 0 NA Intergenic Intergenic 24513 ENSMUSG00000071497.4 ENSMUSG00000071497 ENSMUST00000095978 Nutf2-ps1 protein_coding Interval_101254 chr2 179877720 179878030 + 0 NA intron (ENSMUSG00000000305.12, intron 8 of 15) protein_coding-intron (ENSMUSG00000000305.12, intron 8 of 15) -98118 ENSMUSG00000085704.1 ENSMUSG00000085704 ENSMUST00000150145 4921531C22Rik processed_transcript Interval_16166 chr10 61192054 61192470 + 0 NA Intergenic Intergenic 17000 ENSMUSG00000020096.21 ENSMUSG00000020096 ENSMUST00000126831 Tbata protein_coding Interval_155459 chr8 33714243 33716208 + 0 NA Intergenic Intergenic 16594 ENSMUSG00000049476.12 ENSMUSG00000049476 ENSMUST00000187948 1700104B16Rik lincRNA Interval_36567 chr12 50442183 50442766 + 0 NA intron (ENSMUSG00000002688.8, intron 2 of 18) protein_coding-intron (ENSMUSG00000002688.8, intron 2 of 18) 206624 ENSMUSG00000002688.8 ENSMUSG00000002688 ENSMUST00000002765 Prkd1 protein_coding Interval_100288 chr2 168175979 168176795 + 0 NA Intergenic Intergenic 1865 ENSMUSG00000092923.1 ENSMUSG00000092923 ENSMUST00000175182 Gm24561 miRNA Interval_24764 chr11 36997525 36998207 + 0 NA intron (ENSMUSG00000049336.16, intron 2 of 3) protein_coding-intron (ENSMUSG00000049336.16, intron 2 of 30) -53700 ENSMUSG00000049336.16 ENSMUSG00000049336 ENSMUST00000157030 Tenm2 protein_coding Interval_5186 chr1 86342477 86345653 + 0 NA TTS (ENSMUSG00000026234.12) protein_coding-TTS (ENSMUSG00000026234.12) 7236 ENSMUSG00000064837.1 ENSMUSG00000064837 ENSMUST00000082903 Snora75 snoRNA Interval_113313 chr4 53392636 53393499 + 0 NA Intergenic Intergenic 10963 ENSMUSG00000086267.1 ENSMUSG00000086267 ENSMUST00000154377 Gm12496 lincRNA Interval_102700 chr3 30384601 30385593 + 0 NA intron (ENSMUSG00000027684.16, intron 2 of 8) protein_coding-intron (ENSMUSG00000027684.16, intron 1 of 11) -103329 ENSMUSG00000104079.1 ENSMUSG00000104079 ENSMUST00000192224 Gm37024 TEC Interval_25942 chr11 52861019 52861431 + 0 NA intron (ENSMUSG00000036264.9, intron 3 of 15) protein_coding-intron (ENSMUSG00000036264.9, intron 3 of 15) 96591 ENSMUSG00000036264.9 ENSMUSG00000036264 ENSMUST00000036796 Fstl4 protein_coding Interval_4475 chr1 74433466 74434532 + 0 NA intron (ENSMUSG00000026175.12, intron 19 of 19) protein_coding-intron (ENSMUSG00000026175.12, intron 19 of 19) 10313 ENSMUSG00000026175.12 ENSMUSG00000026175 ENSMUST00000163018 Vil1 protein_coding Interval_172444 chrX 20407855 20408499 + 0 NA Intergenic Intergenic 16468 ENSMUSG00000082855.1 ENSMUSG00000082855 ENSMUST00000117464 Gm14537 processed_pseudogene Interval_67807 chr16 57339540 57340023 + 0 NA exon (ENSMUSG00000116789.1, exon 2 of 2) antisense-exon (ENSMUSG00000116789.1, exon 2 of 2) 1471 ENSMUSG00000116789.1 ENSMUSG00000116789 ENSMUST00000232099 Gm49579 antisense Interval_160624 chr8 111122893 111123194 + 0 NA intron (ENSMUSG00000033624.10, intron 10 of 18) protein_coding-intron (ENSMUSG00000033624.10, intron 10 of 17) 22437 ENSMUSG00000084808.7 ENSMUSG00000084808 ENSMUST00000143719 9430091E24Rik processed_transcript Interval_129127 chr5 117562230 117562583 + 0 NA intron (ENSMUSG00000061578.8, intron 4 of 20) protein_coding-intron (ENSMUSG00000061578.8, intron 4 of 20) 41707 ENSMUSG00000107199.1 ENSMUSG00000107199 ENSMUST00000201553 Gm42550 TEC Interval_94095 chr2 83844631 83844872 + 0 NA intron (ENSMUSG00000048388.3, intron 1 of 7) protein_coding-intron (ENSMUSG00000048388.3, intron 1 of 7) -13337 ENSMUSG00000048388.3 ENSMUSG00000048388 ENSMUST00000148184 Fam171b protein_coding Interval_42975 chr13 22014219 22016121 + 0 NA intron (ENSMUSG00000085827.8, intron 2 of 2) lincRNA-intron (ENSMUSG00000085827.8, intron 2 of 2) -2336 ENSMUSG00000085827.8 ENSMUSG00000085827 ENSMUST00000224688 Gm11290 lincRNA Interval_129464 chr5 120365635 120365937 + 0 NA Intergenic Intergenic -19818 ENSMUSG00000107141.1 ENSMUSG00000107141 ENSMUST00000200789 Gm42654 lincRNA Interval_68852 chr16 87597438 87598323 + 0 NA Intergenic Intergenic 23240 ENSMUSG00000064670.1 ENSMUSG00000064670 ENSMUST00000082736 Gm22808 snRNA Interval_107698 chr3 111224284 111224571 + 0 NA Intergenic Intergenic 98430 ENSMUSG00000106100.1 ENSMUSG00000106100 ENSMUST00000199881 Gm9314 processed_pseudogene Interval_1690 chr1 31210071 31210311 + 0 NA intron (ENSMUSG00000086727.8, intron 1 of 4) protein_coding-intron (ENSMUSG00000086727.8, intron 1 of 2) 12426 ENSMUSG00000086727.8 ENSMUSG00000086727 ENSMUST00000135245 4931428L18Rik protein_coding Interval_99185 chr2 157865827 157866099 + 0 NA intron (ENSMUSG00000027649.15, intron 11 of 15) protein_coding-intron (ENSMUSG00000027649.15, intron 11 of 15) -35573 ENSMUSG00000062846.7 ENSMUSG00000062846 ENSMUST00000121302 Gm14176 processed_pseudogene Interval_93047 chr2 69797641 69797993 + 0 NA TTS (ENSMUSG00000027088.10) protein_coding-TTS (ENSMUSG00000027088.10) 1795 ENSMUSG00000081857.1 ENSMUSG00000081857 ENSMUST00000120263 Gm13624 processed_pseudogene Interval_61094 chr15 79199111 79199824 + 0 NA intron (ENSMUSG00000075555.12, intron 1 of 2) processed_transcript-intron (ENSMUSG00000075555.12, intron 1 of 4) 26747 ENSMUSG00000075555.12 ENSMUSG00000075555 ENSMUST00000148028 Gm10863 processed_transcript Interval_101597 chr3 7509676 7510752 + 0 NA intron (ENSMUSG00000043542.12, intron 1 of 7) protein_coding-intron (ENSMUSG00000043542.12, intron 1 of 8) 6728 ENSMUSG00000043542.12 ENSMUSG00000043542 ENSMUST00000192835 Zc2hc1a protein_coding Interval_107480 chr3 107985637 107986906 + 0 NA promoter-TSS (ENSMUSG00000040562.12) protein_coding-promoter-TSS (ENSMUSG00000040562.12) 150 ENSMUSG00000040562.12 ENSMUSG00000040562 ENSMUST00000150808 Gstm2 protein_coding Interval_74244 chr17 47682695 47683128 + 0 NA exon (ENSMUSG00000090115.7, exon 7 of 7) protein_coding-exon (ENSMUSG00000090115.7, exon 7 of 7) -4699 ENSMUSG00000084880.1 ENSMUSG00000084880 ENSMUST00000155812 Tomm6os antisense Interval_152054 chr7 128610947 128612166 + 0 NA exon (ENSMUSG00000042105.18, exon 1 of 20) protein_coding-exon (ENSMUSG00000042105.18, exon 1 of 20) -15278 ENSMUSG00000096557.2 ENSMUSG00000096557 ENSMUST00000179317 Gm7258 processed_pseudogene Interval_100420 chr2 168922675 168922935 + 0 NA intron (ENSMUSG00000027551.15, intron 5 of 8) protein_coding-intron (ENSMUSG00000027551.15, intron 5 of 8) 32461 ENSMUSG00000027551.15 ENSMUSG00000027551 ENSMUST00000136242 Zfp64 protein_coding Interval_31834 chr11 103223787 103225584 + 0 NA intron (ENSMUSG00000020941.7, intron 13 of 15) protein_coding-intron (ENSMUSG00000020941.7, intron 13 of 15) -6253 ENSMUSG00000044787.7 ENSMUSG00000044787 ENSMUST00000103076 Spata32 protein_coding Interval_88855 chr2 11687562 11687908 + 0 NA intron (ENSMUSG00000026770.5, intron 7 of 7) protein_coding-intron (ENSMUSG00000026770.5, intron 7 of 7) 4609 ENSMUSG00000104101.1 ENSMUSG00000104101 ENSMUST00000193001 Gm37881 TEC Interval_170338 chr9 107266966 107267251 + 0 NA intron (ENSMUSG00000032577.16, intron 1 of 7) protein_coding-intron (ENSMUSG00000032577.16, intron 2 of 10) 22236 ENSMUSG00000032577.16 ENSMUSG00000032577 ENSMUST00000141596 Mapkapk3 protein_coding Interval_126753 chr5 92563423 92563638 + 0 NA intron (ENSMUSG00000057068.15, intron 2 of 8) protein_coding-intron (ENSMUSG00000057068.15, intron 2 of 8) -7947 ENSMUSG00000057068.15 ENSMUSG00000057068 ENSMUST00000082382 Fam47e protein_coding Interval_152765 chr7 137349654 137349855 + 0 NA Intergenic Intergenic -13325 ENSMUSG00000109677.1 ENSMUSG00000109677 ENSMUST00000211531 Gm45514 processed_pseudogene Interval_169978 chr9 103378866 103381050 + 0 NA Intergenic Intergenic -14979 ENSMUSG00000032803.15 ENSMUSG00000032803 ENSMUST00000190127 Cdv3 protein_coding Interval_72560 chr17 30671709 30673623 + 0 NA intron (ENSMUSG00000033826.10, intron 2 of 2) protein_coding-intron (ENSMUSG00000033826.10, intron 16 of 92) 2026 ENSMUSG00000033826.10 ENSMUSG00000033826 ENSMUST00000235567 Dnah8 protein_coding Interval_112310 chr4 40267888 40270336 + 0 NA promoter-TSS (ENSMUSG00000028407.4) protein_coding-promoter-TSS (ENSMUSG00000028407.4) -672 ENSMUSG00000028407.4 ENSMUSG00000028407 ENSMUST00000207780 Smim27 protein_coding Interval_45505 chr13 55520771 55521005 + 0 NA Intergenic Intergenic -7450 ENSMUSG00000021493.15 ENSMUSG00000021493 ENSMUST00000153426 Pdlim7 protein_coding Interval_140980 chr6 123762246 123763254 + 0 NA Intergenic Intergenic -16129 ENSMUSG00000072780.3 ENSMUSG00000072780 ENSMUST00000232985 Vmn2r24 protein_coding Interval_32996 chr11 113583662 113584409 + 0 NA intron (ENSMUSG00000041654.15, intron 2 of 2) protein_coding-intron (ENSMUSG00000041654.15, intron 2 of 2) -18256 ENSMUSG00000041654.15 ENSMUSG00000041654 ENSMUST00000123153 Slc39a11 protein_coding Interval_14377 chr10 31885754 31886392 + 0 NA intron (ENSMUSG00000069670.8, intron 4 of 6) protein_coding-intron (ENSMUSG00000069670.8, intron 4 of 6) 18161 ENSMUSG00000112866.1 ENSMUSG00000112866 ENSMUST00000219333 Gm47704 TEC Interval_72504 chr17 30253907 30254899 + 0 NA intron (ENSMUSG00000062202.14, intron 1 of 2) protein_coding-intron (ENSMUSG00000062202.14, intron 9 of 11) -56676 ENSMUSG00000089222.1 ENSMUSG00000089222 ENSMUST00000158597 Gm25049 snRNA Interval_117223 chr4 120730713 120731910 + 0 NA intron (ENSMUSG00000028631.7, intron 1 of 5) protein_coding-intron (ENSMUSG00000028631.7, intron 1 of 13) 17301 ENSMUSG00000028631.7 ENSMUSG00000028631 ENSMUST00000129478 Kcnq4 protein_coding Interval_15653 chr10 53046668 53046925 + 0 NA intron (ENSMUSG00000038602.7, intron 3 of 7) protein_coding-intron (ENSMUSG00000038602.7, intron 3 of 7) -55747 ENSMUSG00000112681.1 ENSMUSG00000112681 ENSMUST00000218783 Gm47622 sense_intronic Interval_166933 chr9 64000795 64000994 + 0 NA intron (ENSMUSG00000036867.7, intron 3 of 4) protein_coding-intron (ENSMUSG00000036867.7, intron 3 of 3) 21138 ENSMUSG00000036867.7 ENSMUSG00000036867 ENSMUST00000179458 Smad6 protein_coding Interval_81797 chr18 64839423 64840468 + 0 NA Intergenic Intergenic -33449 ENSMUSG00000118045.1 ENSMUSG00000118045 ENSMUST00000237689 Gm29860 lincRNA Interval_71440 chr17 23758696 23759419 + 0 NA intron (ENSMUSG00000040097.16, intron 4 of 6) protein_coding-intron (ENSMUSG00000040097.16, intron 4 of 5) -2136 ENSMUSG00000040097.16 ENSMUSG00000040097 ENSMUST00000226460 Flywch1 protein_coding Interval_18041 chr10 81505081 81505536 + 0 NA TTS (ENSMUSG00000076228.1) miRNA-TTS (ENSMUSG00000076228.1) 686 ENSMUSG00000076228.1 ENSMUSG00000076228 ENSMUST00000102273 Gm25595 miRNA Interval_143107 chr6 149383414 149384027 + 0 NA Intergenic Intergenic -18073 ENSMUSG00000081335.1 ENSMUSG00000081335 ENSMUST00000121079 Gm15786 processed_pseudogene Interval_64577 chr16 13427354 13428267 + 0 NA intron (ENSMUSG00000087526.2, intron 3 of 7) antisense-intron (ENSMUSG00000087526.2, intron 1 of 3) -21713 ENSMUSG00000076972.2 ENSMUSG00000076972 ENSMUST00000103784 Mir193b miRNA Interval_155201 chr8 27412072 27412335 + 0 NA intron (ENSMUSG00000031491.10, intron 1 of 5) protein_coding-intron (ENSMUSG00000031491.10, intron 1 of 5) 1741 ENSMUSG00000031491.10 ENSMUSG00000031491 ENSMUST00000033882 Chrna6 protein_coding Interval_94505 chr2 91729915 91730791 + 0 NA exon (ENSMUSG00000040506.16, exon 1 of 18) protein_coding-exon (ENSMUSG00000040506.16, exon 1 of 18) 171 ENSMUSG00000040506.16 ENSMUSG00000040506 ENSMUST00000142224 Ambra1 protein_coding Interval_15521 chr10 50698984 50699265 + 0 NA intron (ENSMUSG00000038774.9, intron 14 of 41) protein_coding-intron (ENSMUSG00000038774.9, intron 14 of 41) 2652 ENSMUSG00000112927.1 ENSMUSG00000112927 ENSMUST00000217818 Gm48332 TEC Interval_76420 chr17 80061115 80062893 + 0 NA exon (ENSMUSG00000024095.15, exon 1 of 13) protein_coding-exon (ENSMUSG00000024095.15, exon 1 of 13) 131 ENSMUSG00000024095.15 ENSMUSG00000024095 ENSMUST00000184726 Hnrnpll protein_coding Interval_14314 chr10 30772574 30773868 + 0 NA intron (ENSMUSG00000039697.16, intron 1 of 6) protein_coding-intron (ENSMUSG00000039697.16, intron 1 of 15) -3646 ENSMUSG00000111442.1 ENSMUSG00000111442 ENSMUST00000214553 Gm48334 TEC Interval_169197 chr9 95455535 95455738 + 0 NA Intergenic Intergenic 30006 ENSMUSG00000101459.1 ENSMUSG00000101459 ENSMUST00000190263 Gm19193 processed_pseudogene Interval_68895 chr16 88014007 88014188 + 0 NA intron (ENSMUSG00000022935.16, intron 4 of 16) protein_coding-intron (ENSMUSG00000022935.16, intron 4 of 15) 226525 ENSMUSG00000055972.5 ENSMUSG00000055972 ENSMUST00000189929 2810407A14Rik lincRNA Interval_2698 chr1 43520938 43522200 + 0 NA intron (ENSMUSG00000066877.11, intron 2 of 2) protein_coding-intron (ENSMUSG00000066877.11, intron 2 of 4) -10836 ENSMUSG00000066877.11 ENSMUSG00000066877 ENSMUST00000114744 Nck2 protein_coding Interval_153743 chr8 6036415 6036760 + 0 NA TTS (ENSMUSG00000109518.1) TEC-TTS (ENSMUSG00000109518.1) 1720 ENSMUSG00000109518.1 ENSMUSG00000109518 ENSMUST00000208320 Gm44843 TEC Interval_174428 chrX 152201633 152204370 + 0 NA exon (ENSMUSG00000041115.16, exon 3 of 14) protein_coding-exon (ENSMUSG00000041115.16, exon 3 of 14) 58733 ENSMUSG00000041115.16 ENSMUSG00000041115 ENSMUST00000096275 Iqsec2 protein_coding Interval_73319 chr17 36177535 36179655 + 0 NA promoter-TSS (ENSMUSG00000092374.1) processed_pseudogene-promoter-TSS (ENSMUSG00000092374.1) -519 ENSMUSG00000092374.1 ENSMUSG00000092374 ENSMUST00000173570 Gm6623 processed_pseudogene Interval_119256 chr4 136493081 136493340 + 0 NA intron (ENSMUSG00000001089.14, intron 1 of 1) protein_coding-intron (ENSMUSG00000001089.14, intron 1 of 3) 23449 ENSMUSG00000001089.14 ENSMUSG00000001089 ENSMUST00000168936 Luzp1 protein_coding Interval_4682 chr1 76855533 76855779 + 0 NA Intergenic Intergenic 172136 ENSMUSG00000100534.1 ENSMUSG00000100534 ENSMUST00000191156 Gm816 lincRNA Interval_143396 chr7 6372116 6373265 + 0 NA intron (ENSMUSG00000055150.15, intron 3 of 5) protein_coding-intron (ENSMUSG00000055150.15, intron 1 of 2) 9358 ENSMUSG00000055150.15 ENSMUSG00000055150 ENSMUST00000108559 Zfp78 protein_coding Interval_162159 chr8 125569179 125571263 + 0 NA promoter-TSS (ENSMUSG00000001995.9) protein_coding-promoter-TSS (ENSMUSG00000001995.9) -413 ENSMUSG00000001995.9 ENSMUSG00000001995 ENSMUST00000212604 Sipa1l2 protein_coding Interval_35384 chr12 21212873 21213412 + 0 NA exon (ENSMUSG00000052632.16, exon 9 of 27) protein_coding-exon (ENSMUSG00000052632.16, exon 9 of 27) 34181 ENSMUSG00000118655.1 ENSMUSG00000118655 ENSMUST00000172962 AC156032.1 processed_transcript Interval_154149 chr8 13062512 13062732 + 0 NA intron (ENSMUSG00000031445.5, intron 1 of 7) protein_coding-intron (ENSMUSG00000031445.5, intron 1 of 7) 1679 ENSMUSG00000031445.5 ENSMUSG00000031445 ENSMUST00000033822 Proz protein_coding Interval_135389 chr6 38888924 38889677 + 0 NA intron (ENSMUSG00000029925.13, intron 1 of 5) protein_coding-intron (ENSMUSG00000029925.13, intron 1 of 5) -13377 ENSMUSG00000061436.15 ENSMUSG00000061436 ENSMUST00000114855 Hipk2 protein_coding Interval_125467 chr5 67382043 67383327 + 0 NA Intergenic Intergenic 17180 ENSMUSG00000107266.1 ENSMUSG00000107266 ENSMUST00000202864 Gm43698 lincRNA Interval_82505 chr18 74728886 74729184 + 0 NA intron (ENSMUSG00000025885.18, intron 30 of 39) protein_coding-intron (ENSMUSG00000025885.18, intron 29 of 38) 15416 ENSMUSG00000025885.18 ENSMUSG00000025885 ENSMUST00000154986 Myo5b protein_coding Interval_14630 chr10 37231057 37232790 + 0 NA Intergenic Intergenic 31825 ENSMUSG00000110799.1 ENSMUSG00000110799 ENSMUST00000217044 4930543K20Rik lincRNA Interval_141452 chr6 128362291 128363585 + 0 NA promoter-TSS (ENSMUSG00000048668.16) protein_coding-promoter-TSS (ENSMUSG00000048668.16) 3420 ENSMUSG00000107753.1 ENSMUSG00000107753 ENSMUST00000204148 Gm44371 TEC Interval_42340 chr13 12222614 12222819 + 0 NA intron (ENSMUSG00000021311.9, intron 15 of 17) protein_coding-intron (ENSMUSG00000021311.9, intron 16 of 32) 35397 ENSMUSG00000021311.9 ENSMUSG00000021311 ENSMUST00000221290 Mtr protein_coding Interval_159835 chr8 104212713 104212989 + 0 NA intron (ENSMUSG00000031872.14, intron 2 of 3) protein_coding-intron (ENSMUSG00000031872.14, intron 3 of 4) 5448 ENSMUSG00000110674.1 ENSMUSG00000110674 ENSMUST00000212627 Gm45892 antisense Interval_129924 chr5 123086470 123087135 + 0 NA intron (ENSMUSG00000054434.14, intron 1 of 2) protein_coding-intron (ENSMUSG00000054434.14, intron 1 of 11) 10432 ENSMUSG00000054434.14 ENSMUSG00000054434 ENSMUST00000161049 Tmem120b protein_coding Interval_88689 chr2 9763014 9763242 + 0 NA Intergenic Intergenic 112271 ENSMUSG00000015619.10 ENSMUSG00000015619 ENSMUST00000142305 Gata3 protein_coding Interval_133311 chr5 151501291 151501626 + 0 NA Intergenic Intergenic -39593 ENSMUSG00000107123.1 ENSMUSG00000107123 ENSMUST00000202322 Vmn2r-ps25 unprocessed_pseudogene Interval_116328 chr4 109884466 109884744 + 0 NA intron (ENSMUSG00000010517.7, intron 4 of 5) protein_coding-intron (ENSMUSG00000010517.7, intron 14 of 18) 43820 ENSMUSG00000010517.7 ENSMUSG00000010517 ENSMUST00000155204 Faf1 protein_coding Interval_71028 chr17 17267357 17268644 + 0 NA Intergenic Intergenic 5650 ENSMUSG00000116802.1 ENSMUSG00000116802 ENSMUST00000231376 Gm5165 lincRNA Interval_98953 chr2 156286830 156287312 + 0 NA intron (ENSMUSG00000038116.16, intron 1 of 2) protein_coding-intron (ENSMUSG00000038116.16, intron 9 of 17) 25676 ENSMUSG00000046229.10 ENSMUSG00000046229 ENSMUST00000079125 Scand1 protein_coding Interval_119326 chr4 136878090 136878827 + 0 NA Intergenic Intergenic 7729 ENSMUSG00000036905.8 ENSMUSG00000036905 ENSMUST00000046384 C1qb protein_coding Interval_5345 chr1 87763111 87764254 + 0 NA intron (ENSMUSG00000026289.15, intron 2 of 17) protein_coding-intron (ENSMUSG00000026289.15, intron 2 of 17) 7594 ENSMUSG00000026289.15 ENSMUSG00000026289 ENSMUST00000127884 Atg16l1 protein_coding Interval_78390 chr18 12440006 12440963 + 0 NA intron (ENSMUSG00000024421.16, intron 13 of 74) protein_coding-intron (ENSMUSG00000024421.16, intron 13 of 74) 58978 ENSMUSG00000100090.1 ENSMUSG00000100090 ENSMUST00000187766 Gm29199 processed_pseudogene Interval_143268 chr7 4870129 4870673 + 0 NA promoter-TSS (ENSMUSG00000052605.12) protein_coding-promoter-TSS (ENSMUSG00000052605.12) -143 ENSMUSG00000052605.12 ENSMUSG00000052605 ENSMUST00000208173 Isoc2b protein_coding Interval_139047 chr6 94579285 94579628 + 0 NA intron (ENSMUSG00000045100.11, intron 1 of 4) protein_coding-intron (ENSMUSG00000045100.11, intron 6 of 9) 26959 ENSMUSG00000098531.1 ENSMUSG00000098531 ENSMUST00000183891 Mir7041 miRNA Interval_45667 chr13 56693630 56693868 + 0 NA Intergenic Intergenic -6181 ENSMUSG00000098962.1 ENSMUSG00000098962 ENSMUST00000184060 Gm27698 misc_RNA Interval_13400 chr10 17772395 17773045 + 0 NA Intergenic Intergenic 22608 ENSMUSG00000093672.2 ENSMUSG00000093672 ENSMUST00000176132 Gm20655 antisense Interval_126969 chr5 98576277 98576667 + 0 NA intron (ENSMUSG00000057816.7, intron 3 of 5) protein_coding-intron (ENSMUSG00000057816.7, intron 3 of 5) -9546 ENSMUSG00000067101.5 ENSMUSG00000067101 ENSMUST00000086912 1700010H22Rik lincRNA Interval_160505 chr8 110113093 110114828 + 0 NA Intergenic Intergenic 5168 ENSMUSG00000095941.3 ENSMUSG00000095941 ENSMUST00000178785 Tle7 protein_coding Interval_15958 chr10 59640727 59641220 + 0 NA Intergenic Intergenic -24318 ENSMUSG00000009647.13 ENSMUSG00000009647 ENSMUST00000162012 Mcu protein_coding Interval_89157 chr2 17669994 17671980 + 0 NA intron (ENSMUSG00000053702.16, intron 2 of 6) protein_coding-intron (ENSMUSG00000053702.16, intron 2 of 6) 107473 ENSMUSG00000099161.1 ENSMUSG00000099161 ENSMUST00000184784 Mir6419 miRNA Interval_148911 chr7 89989116 89990704 + 0 NA intron (ENSMUSG00000097585.2, intron 5 of 8) processed_transcript-intron (ENSMUSG00000097585.2, intron 5 of 8) -8934 ENSMUSG00000030619.10 ENSMUSG00000030619 ENSMUST00000157001 Eed protein_coding Interval_123489 chr5 32888411 32888706 + 0 NA TTS (ENSMUSG00000037426.18) protein_coding-TTS (ENSMUSG00000037426.18) -25073 ENSMUSG00000089080.1 ENSMUSG00000089080 ENSMUST00000158455 Gm24003 snRNA Interval_103597 chr3 51049834 51050173 + 0 NA Intergenic Intergenic 24853 ENSMUSG00000102067.1 ENSMUSG00000102067 ENSMUST00000189687 Gm29230 lincRNA Interval_164429 chr9 36957906 36958287 + 0 NA intron (ENSMUSG00000035934.16, intron 3 of 5) protein_coding-intron (ENSMUSG00000035934.16, intron 4 of 12) -57662 ENSMUSG00000093721.1 ENSMUSG00000093721 ENSMUST00000176020 Gm3896 antisense Interval_12630 chr10 4020173 4020998 + 0 NA intron (ENSMUSG00000040675.17, intron 11 of 27) protein_coding-intron (ENSMUSG00000040675.17, intron 11 of 27) -11695 ENSMUSG00000040675.17 ENSMUSG00000040675 ENSMUST00000154517 Mthfd1l protein_coding Interval_63155 chr15 99425902 99426544 + 0 NA exon (ENSMUSG00000023009.14, exon 8 of 13) protein_coding-exon (ENSMUSG00000023009.14, exon 8 of 13) -1478 ENSMUSG00000089968.1 ENSMUSG00000089968 ENSMUST00000159738 Nckap5los antisense Interval_62624 chr15 95762872 95763718 + 0 NA Intergenic Intergenic -9563 ENSMUSG00000115569.1 ENSMUSG00000115569 ENSMUST00000226370 Gm49169 lincRNA Interval_60137 chr15 66170653 66172539 + 0 NA intron (ENSMUSG00000056258.9, intron 1 of 14) protein_coding-intron (ENSMUSG00000056258.9, intron 1 of 14) 97044 ENSMUSG00000099013.1 ENSMUSG00000099013 ENSMUST00000184492 Gm27153 antisense Interval_104331 chr3 63543020 63543396 + 0 NA Intergenic Intergenic 54215 ENSMUSG00000088957.1 ENSMUSG00000088957 ENSMUST00000158332 Gm24946 snRNA Interval_1215 chr1 17207148 17208286 + 0 NA Intergenic Intergenic 39314 ENSMUSG00000099899.1 ENSMUSG00000099899 ENSMUST00000187817 Gm28784 lincRNA Interval_28862 chr11 78826315 78827067 + 0 NA promoter-TSS (ENSMUSG00000072640.11) protein_coding-promoter-TSS (ENSMUSG00000072640.11) 107 ENSMUSG00000072640.11 ENSMUSG00000072640 ENSMUST00000100748 Lyrm9 protein_coding Interval_1476 chr1 23943225 23943590 + 0 NA Intergenic Intergenic -33671 ENSMUSG00000026155.13 ENSMUSG00000026155 ENSMUST00000133398 Smap1 protein_coding Interval_88185 chr19 60466961 60469220 + 0 NA exon (ENSMUSG00000045052.3, exon 1 of 1) protein_coding-exon (ENSMUSG00000045052.3, exon 1 of 1) 214 ENSMUSG00000045052.3 ENSMUSG00000045052 ENSMUST00000051277 Prlhr protein_coding Interval_5453 chr1 88963898 88964554 + 0 NA Intergenic Intergenic 31907 ENSMUSG00000101333.1 ENSMUSG00000101333 ENSMUST00000188327 Gm4753 processed_pseudogene Interval_125605 chr5 72542091 72542715 + 0 NA intron (ENSMUSG00000072889.9, intron 5 of 21) protein_coding-intron (ENSMUSG00000072889.9, intron 4 of 6) 12826 ENSMUSG00000105510.1 ENSMUSG00000105510 ENSMUST00000197676 Gm43815 TEC Interval_111197 chr4 14672845 14673082 + 0 NA intron (ENSMUSG00000023151.9, intron 3 of 3) protein_coding-intron (ENSMUSG00000023151.9, intron 7 of 8) -51466 ENSMUSG00000040569.13 ENSMUSG00000040569 ENSMUST00000143105 Slc26a7 protein_coding Interval_79712 chr18 34679361 34680358 + 0 NA Intergenic Intergenic 32459 ENSMUSG00000064857.1 ENSMUSG00000064857 ENSMUST00000082923 n-R5s25 rRNA Interval_108936 chr3 133494027 133494669 + 0 NA intron (ENSMUSG00000040943.12, intron 2 of 2) protein_coding-intron (ENSMUSG00000040943.12, intron 2 of 10) -13666 ENSMUSG00000040943.12 ENSMUSG00000040943 ENSMUST00000195913 Tet2 protein_coding Interval_4677 chr1 76351267 76351789 + 0 NA Intergenic Intergenic -69164 ENSMUSG00000100827.1 ENSMUSG00000100827 ENSMUST00000185857 Gm29069 lincRNA Interval_77377 chr17 88318454 88319209 + 0 NA intron (ENSMUSG00000117351.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000117351.1, intron 1 of 1) -13453 ENSMUSG00000117497.1 ENSMUSG00000117497 ENSMUST00000234925 1700116H05Rik lincRNA Interval_74352 chr17 49309200 49309698 + 0 NA intron (ENSMUSG00000117221.1, intron 2 of 4) lincRNA-intron (ENSMUSG00000117221.1, intron 2 of 4) 2792 ENSMUSG00000117221.1 ENSMUSG00000117221 ENSMUST00000233890 Gm17830 lincRNA Interval_142789 chr6 145720744 145721031 + 0 NA Intergenic Intergenic 25386 ENSMUSG00000085658.1 ENSMUSG00000085658 ENSMUST00000144757 Gm15704 lincRNA Interval_126072 chr5 77227401 77228087 + 0 NA intron (ENSMUSG00000107034.1, intron 1 of 1) processed_pseudogene-intron (ENSMUSG00000107034.1, intron 1 of 1) 366 ENSMUSG00000107034.1 ENSMUSG00000107034 ENSMUST00000201959 Gm19060 processed_pseudogene Interval_69109 chr16 90723990 90724414 + 0 NA intron (ENSMUSG00000022978.11, intron 2 of 2) protein_coding-intron (ENSMUSG00000022978.11, intron 2 of 4) 2937 ENSMUSG00000022978.11 ENSMUSG00000022978 ENSMUST00000147546 Mis18a protein_coding Interval_110745 chr4 7947738 7948260 + 0 NA Intergenic Intergenic 127083 ENSMUSG00000094771.1 ENSMUSG00000094771 ENSMUST00000179446 Gm23860 snoRNA Interval_89943 chr2 26622877 26623402 + 0 NA intron (ENSMUSG00000092356.2, intron 3 of 6) protein_coding-intron (ENSMUSG00000092356.2, intron 3 of 6) -5355 ENSMUSG00000036186.5 ENSMUSG00000036186 ENSMUST00000144449 Dipk1b protein_coding Interval_168045 chr9 75572192 75572388 + 0 NA exon (ENSMUSG00000032186.15, exon 10 of 10) protein_coding-exon (ENSMUSG00000032186.15, exon 10 of 10) -12633 ENSMUSG00000058587.9 ENSMUSG00000058587 ENSMUST00000217459 Tmod3 protein_coding Interval_112192 chr4 35417724 35418608 + 0 NA Intergenic Intergenic 17108 ENSMUSG00000083934.1 ENSMUSG00000083934 ENSMUST00000122251 Gm12368 processed_pseudogene Interval_87981 chr19 57554265 57554684 + 0 NA Intergenic Intergenic -10251 ENSMUSG00000117770.1 ENSMUSG00000117770 ENSMUST00000235373 Gm50285 lincRNA Interval_115699 chr4 102569940 102570886 + 0 NA exon (ENSMUSG00000028525.16, exon 1 of 10) protein_coding-exon (ENSMUSG00000028525.16, exon 1 of 10) -166399 ENSMUSG00000077260.1 ENSMUSG00000077260 ENSMUST00000104072 Gm24869 snoRNA Interval_91797 chr2 49700144 49700875 + 0 NA promoter-TSS (ENSMUSG00000026764.15) protein_coding-promoter-TSS (ENSMUSG00000026764.15) 20010 ENSMUSG00000082879.1 ENSMUSG00000082879 ENSMUST00000120607 Gm13525 processed_pseudogene Interval_113364 chr4 53847707 53848710 + 0 NA TTS (ENSMUSG00000028420.13) protein_coding-TTS (ENSMUSG00000028420.13) -12444 ENSMUSG00000065887.1 ENSMUSG00000065887 ENSMUST00000083953 n-R5s185 rRNA Interval_82647 chr18 75606393 75607886 + 0 NA intron (ENSMUSG00000052928.9, intron 5 of 11) protein_coding-intron (ENSMUSG00000052928.9, intron 5 of 11) 30134 ENSMUSG00000052928.9 ENSMUSG00000052928 ENSMUST00000235147 Ctif protein_coding Interval_14250 chr10 29778162 29778407 + 0 NA Intergenic Intergenic -3127 ENSMUSG00000111427.1 ENSMUSG00000111427 ENSMUST00000215034 Gm6390 processed_pseudogene Interval_116662 chr4 116448612 116449133 + 0 NA promoter-TSS (ENSMUSG00000082592.1) processed_pseudogene-promoter-TSS (ENSMUSG00000082592.1) 84 ENSMUSG00000082592.1 ENSMUSG00000082592 ENSMUST00000121683 Gm12950 processed_pseudogene Interval_132956 chr5 148950258 148950588 + 0 NA intron (ENSMUSG00000079069.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000079069.1, intron 1 of 2) 173 ENSMUSG00000079069.1 ENSMUSG00000079069 ENSMUST00000110507 8430423G03Rik lincRNA Interval_48052 chr13 95583084 95584021 + 0 NA Intergenic Intergenic -4576 ENSMUSG00000113969.1 ENSMUSG00000113969 ENSMUST00000221593 Gm48731 processed_pseudogene Interval_34578 chr12 5373674 5376236 + 0 NA promoter-TSS (ENSMUSG00000037735.7) lincRNA-promoter-TSS (ENSMUSG00000037735.7) -36686 ENSMUSG00000037735.7 ENSMUSG00000037735 ENSMUST00000163627 2810032G03Rik lincRNA Interval_174706 chrX 163864507 163864906 + 0 NA Intergenic Intergenic -46695 ENSMUSG00000031367.15 ENSMUSG00000031367 ENSMUST00000140845 Ap1s2 protein_coding Interval_121410 chr4 155607522 155607942 + 0 NA TTS (ENSMUSG00000086682.1) processed_transcript-TTS (ENSMUSG00000086682.1) -2471 ENSMUSG00000042202.15 ENSMUSG00000042202 ENSMUST00000151425 Slc35e2 protein_coding Interval_80650 chr18 45267382 45269412 + 0 NA promoter-TSS (ENSMUSG00000054477.16) protein_coding-promoter-TSS (ENSMUSG00000054477.16) 17723 ENSMUSG00000073569.2 ENSMUSG00000073569 ENSMUST00000097581 Gm10540 processed_pseudogene Interval_72325 chr17 29213362 29214921 + 0 NA intron (ENSMUSG00000024008.16, intron 3 of 13) protein_coding-intron (ENSMUSG00000024008.16, intron 3 of 20) -9155 ENSMUSG00000117610.1 ENSMUSG00000117610 ENSMUST00000235091 Gm50054 TEC Interval_23739 chr11 25649041 25649230 + 0 NA promoter-TSS (ENSMUSG00000032985.15) protein_coding-promoter-TSS (ENSMUSG00000032985.15) -36005 ENSMUSG00000064761.1 ENSMUSG00000064761 ENSMUST00000082827 Gm23514 snoRNA Interval_68016 chr16 63754280 63754449 + 0 NA intron (ENSMUSG00000052504.7, intron 2 of 5) protein_coding-intron (ENSMUSG00000052504.7, intron 3 of 16) -6830 ENSMUSG00000088992.1 ENSMUSG00000088992 ENSMUST00000158367 Gm22769 snRNA Interval_114641 chr4 83395071 83395513 + 0 NA Intergenic Intergenic -4624 ENSMUSG00000086321.1 ENSMUSG00000086321 ENSMUST00000155822 Gm11413 antisense Interval_43568 chr13 33648033 33648612 + 0 NA Intergenic Intergenic 6697 ENSMUSG00000083042.1 ENSMUSG00000083042 ENSMUST00000120908 Gm11388 unprocessed_pseudogene Interval_13265 chr10 13728893 13729495 + 0 NA intron (ENSMUSG00000019806.13, intron 3 of 5) protein_coding-intron (ENSMUSG00000019806.13, intron 3 of 5) 101996 ENSMUSG00000112055.1 ENSMUSG00000112055 ENSMUST00000219684 Gm48773 lincRNA Interval_134067 chr6 18639983 18640475 + 0 NA Intergenic Intergenic -87063 ENSMUSG00000095722.1 ENSMUSG00000095722 ENSMUST00000180301 Gm23648 snRNA Interval_83838 chr19 5014853 5017206 + 0 NA Intergenic Intergenic 6644 ENSMUSG00000117723.1 ENSMUSG00000117723 ENSMUST00000235939 Gm50382 processed_pseudogene Interval_173664 chrX 101639227 101641235 + 0 NA promoter-TSS (ENSMUSG00000034160.13) protein_coding-promoter-TSS (ENSMUSG00000034160.13) 91 ENSMUSG00000034160.13 ENSMUSG00000034160 ENSMUST00000147635 Ogt protein_coding Interval_155486 chr8 33871164 33872047 + 0 NA intron (ENSMUSG00000031586.17, intron 1 of 8) protein_coding-intron (ENSMUSG00000031586.17, intron 1 of 7) 14142 ENSMUSG00000098166.1 ENSMUSG00000098166 ENSMUST00000182843 Gm26978 sense_intronic Interval_76719 chr17 83683837 83684471 + 0 NA Intergenic Intergenic -45010 ENSMUSG00000055817.18 ENSMUSG00000055817 ENSMUST00000175920 Mta3 protein_coding Interval_43190 chr13 24965383 24966040 + 0 NA intron (ENSMUSG00000021340.13, intron 1 of 2) protein_coding-intron (ENSMUSG00000021340.13, intron 11 of 25) 3084 ENSMUSG00000021340.13 ENSMUSG00000021340 ENSMUST00000223873 Gpld1 protein_coding Interval_49512 chr13 112529757 112530274 + 0 NA exon (ENSMUSG00000050377.8, exon 13 of 13) protein_coding-exon (ENSMUSG00000050377.8, exon 13 of 13) 35651 ENSMUSG00000050377.8 ENSMUSG00000050377 ENSMUST00000225397 Il31ra protein_coding Interval_91567 chr2 43555037 43555665 + 0 NA promoter-TSS (ENSMUSG00000026866.16) protein_coding-promoter-TSS (ENSMUSG00000026866.16) -35953 ENSMUSG00000080994.2 ENSMUSG00000080994 ENSMUST00000119418 Gm13464 processed_pseudogene Interval_106737 chr3 100214773 100215014 + 0 NA Intergenic Intergenic 14206 ENSMUSG00000027865.10 ENSMUSG00000027865 ENSMUST00000200036 Gdap2 protein_coding Interval_169795 chr9 101495338 101495676 + 0 NA Intergenic Intergenic -46154 ENSMUSG00000061486.7 ENSMUSG00000061486 ENSMUST00000075243 Gm5161 processed_pseudogene Interval_104020 chr3 57448355 57449101 + 0 NA Intergenic Intergenic 23414 ENSMUSG00000027801.7 ENSMUSG00000027801 ENSMUST00000029377 Tm4sf4 protein_coding Interval_6607 chr1 118256783 118257931 + 0 NA Intergenic Intergenic 7494 ENSMUSG00000099870.1 ENSMUSG00000099870 ENSMUST00000188426 Gm7200 processed_pseudogene Interval_51089 chr14 22452572 22453085 + 0 NA intron (ENSMUSG00000063458.13, intron 2 of 3) protein_coding-intron (ENSMUSG00000063458.13, intron 2 of 6) 89995 ENSMUSG00000114412.1 ENSMUSG00000114412 ENSMUST00000225587 4930405A10Rik antisense Interval_147388 chr7 66347206 66347683 + 0 NA intron (ENSMUSG00000015133.17, intron 2 of 2) protein_coding-intron (ENSMUSG00000015133.17, intron 2 of 33) -18461 ENSMUSG00000078677.1 ENSMUSG00000078677 ENSMUST00000107486 Gm10974 protein_coding Interval_101362 chr2 180786387 180786970 + 0 NA Intergenic Intergenic -9778 ENSMUSG00000045493.4 ENSMUSG00000045493 ENSMUST00000108878 Bhlhe23 protein_coding Interval_173031 chrX 66063549 66063763 + 0 NA Intergenic Intergenic 38107 ENSMUSG00000082863.1 ENSMUSG00000082863 ENSMUST00000117816 Gm14674 processed_pseudogene Interval_17061 chr10 70949369 70950345 + 0 NA intron (ENSMUSG00000014329.14, intron 10 of 20) protein_coding-intron (ENSMUSG00000014329.14, intron 10 of 21) -1368 ENSMUSG00000014329.14 ENSMUSG00000014329 ENSMUST00000144740 Bicc1 protein_coding Interval_58323 chr15 32374791 32376091 + 0 NA intron (ENSMUSG00000022231.10, intron 2 of 7) protein_coding-intron (ENSMUSG00000022231.10, intron 2 of 22) 130616 ENSMUSG00000022231.10 ENSMUSG00000022231 ENSMUST00000227429 Sema5a protein_coding Interval_12632 chr10 4039359 4039640 + 0 NA intron (ENSMUSG00000040675.17, intron 3 of 6) protein_coding-intron (ENSMUSG00000040675.17, intron 16 of 27) 7219 ENSMUSG00000040675.17 ENSMUSG00000040675 ENSMUST00000154517 Mthfd1l protein_coding Interval_52761 chr14 49454144 49454576 + 0 NA intron (ENSMUSG00000021852.14, intron 1 of 2) protein_coding-intron (ENSMUSG00000021852.14, intron 1 of 7) 65809 ENSMUSG00000089416.1 ENSMUSG00000089416 ENSMUST00000158791 Gm22116 snRNA Interval_17180 chr10 74243380 74243873 + 0 NA intron (ENSMUSG00000052613.16, intron 8 of 13) protein_coding-intron (ENSMUSG00000052613.16, intron 8 of 13) 296570 ENSMUSG00000052613.16 ENSMUSG00000052613 ENSMUST00000192370 Pcdh15 protein_coding Interval_49002 chr13 106836301 106837027 + 0 NA promoter-TSS (ENSMUSG00000118423.1) transcribed_unitary_pseudogene-promoter-TSS (ENSMUSG00000118423.1) -343 ENSMUSG00000042590.17 ENSMUSG00000042590 ENSMUST00000186005 Ipo11 protein_coding Interval_82226 chr18 69404240 69405031 + 0 NA intron (ENSMUSG00000053477.17, intron 1 of 6) protein_coding-intron (ENSMUSG00000053477.17, intron 3 of 20) -117815 ENSMUSG00000053477.17 ENSMUSG00000053477 ENSMUST00000136019 Tcf4 protein_coding Interval_42241 chr13 10687413 10687972 + 0 NA intron (ENSMUSG00000097009.2, intron 8 of 10) antisense-intron (ENSMUSG00000097009.2, intron 4 of 7) -12469 ENSMUSG00000114134.1 ENSMUSG00000114134 ENSMUST00000221855 Gm47408 lincRNA Interval_89470 chr2 20848753 20849886 + 0 NA TTS (ENSMUSG00000036591.16) protein_coding-TTS (ENSMUSG00000036591.16) 10477 ENSMUSG00000036591.16 ENSMUSG00000036591 ENSMUST00000173654 Arhgap21 protein_coding Interval_53474 chr14 57726124 57726847 + 0 NA intron (ENSMUSG00000021959.16, intron 2 of 8) protein_coding-intron (ENSMUSG00000021959.16, intron 2 of 7) 19618 ENSMUSG00000114942.1 ENSMUSG00000114942 ENSMUST00000174694 Gm49361 protein_coding Interval_111835 chr4 31667066 31667339 + 0 NA Intergenic Intergenic 286730 ENSMUSG00000082254.1 ENSMUSG00000082254 ENSMUST00000118967 Gm11922 processed_pseudogene Interval_94880 chr2 99762960 99763350 + 0 NA Intergenic Intergenic 207904 ENSMUSG00000084313.1 ENSMUSG00000084313 ENSMUST00000117921 Gm13809 processed_pseudogene Interval_47151 chr13 76383623 76385365 + 0 NA promoter-TSS (ENSMUSG00000021596.16) protein_coding-promoter-TSS (ENSMUSG00000021596.16) -54837 ENSMUSG00000114293.1 ENSMUSG00000114293 ENSMUST00000225003 Gm48078 processed_pseudogene Interval_66075 chr16 31452216 31454127 + 0 NA intron (ENSMUSG00000046598.15, intron 6 of 7) protein_coding-intron (ENSMUSG00000046598.15, intron 5 of 6) -16755 ENSMUSG00000116572.1 ENSMUSG00000116572 ENSMUST00000232608 Gm49695 lincRNA Interval_16209 chr10 61435026 61435221 + 0 NA intron (ENSMUSG00000020091.15, intron 2 of 3) protein_coding-intron (ENSMUSG00000020091.15, intron 1 of 2) 15594 ENSMUSG00000112229.1 ENSMUSG00000112229 ENSMUST00000220281 Gm48086 sense_intronic Interval_1901 chr1 34432102 34435230 + 0 NA promoter-TSS (ENSMUSG00000092852.1) miRNA-promoter-TSS (ENSMUSG00000092852.1) -402 ENSMUSG00000102336.1 ENSMUSG00000102336 ENSMUST00000192173 Gm37233 lincRNA Interval_42019 chr13 6579046 6579347 + 0 NA TTS (ENSMUSG00000021196.14) protein_coding-TTS (ENSMUSG00000021196.14) 12193 ENSMUSG00000021193.10 ENSMUSG00000021193 ENSMUST00000222061 Pitrm1 protein_coding Interval_33629 chr11 117627341 117628774 + 0 NA Intergenic Intergenic 16810 ENSMUSG00000054418.6 ENSMUSG00000054418 ENSMUST00000155384 2900041M22Rik processed_transcript Interval_100559 chr2 170122043 170122694 + 0 NA intron (ENSMUSG00000052056.14, intron 2 of 2) protein_coding-intron (ENSMUSG00000052056.14, intron 1 of 5) 25735 ENSMUSG00000052056.14 ENSMUSG00000052056 ENSMUST00000149318 Zfp217 protein_coding Interval_17327 chr10 75904766 75905132 + 0 NA exon (ENSMUSG00000000902.13, exon 3 of 5) protein_coding-exon (ENSMUSG00000000902.13, exon 3 of 5) 10215 ENSMUSG00000000902.13 ENSMUSG00000000902 ENSMUST00000146555 Smarcb1 protein_coding Interval_64022 chr16 5406648 5407405 + 0 NA intron (ENSMUSG00000116029.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000116029.1, intron 1 of 2) -82869 ENSMUSG00000084573.1 ENSMUSG00000084573 ENSMUST00000122624 n-R5s30 rRNA Interval_142969 chr6 147664125 147664911 + 0 NA Intergenic Intergenic -25723 ENSMUSG00000085077.1 ENSMUSG00000085077 ENSMUST00000141575 1700049E15Rik lincRNA Interval_157087 chr8 65063812 65064664 + 0 NA Intergenic Intergenic -10795 ENSMUSG00000074302.1 ENSMUSG00000074302 ENSMUST00000098716 Gm10663 protein_coding Interval_23900 chr11 28046250 28046499 + 0 NA intron (ENSMUSG00000083201.1, intron 1 of 2) processed_pseudogene-intron (ENSMUSG00000083201.1, intron 1 of 2) 339 ENSMUSG00000083201.1 ENSMUSG00000083201 ENSMUST00000119821 Gm12080 processed_pseudogene Interval_80691 chr18 46346680 46347012 + 0 NA Intergenic Intergenic -6417 ENSMUSG00000117742.1 ENSMUSG00000117742 ENSMUST00000236411 4930415P13Rik TEC Interval_85550 chr19 28441536 28441725 + 0 NA intron (ENSMUSG00000052942.13, intron 4 of 10) protein_coding-intron (ENSMUSG00000052942.13, intron 3 of 9) -141205 ENSMUSG00000052942.13 ENSMUSG00000052942 ENSMUST00000161328 Glis3 protein_coding Interval_112528 chr4 42872914 42873331 + 0 NA intron (ENSMUSG00000050141.13, intron 2 of 4) protein_coding-intron (ENSMUSG00000050141.13, intron 2 of 4) 1112 ENSMUSG00000050141.13 ENSMUSG00000050141 ENSMUST00000144112 Fam205c protein_coding Interval_98737 chr2 154587758 154587989 + 0 NA exon (ENSMUSG00000000876.11, exon 4 of 4) protein_coding-exon (ENSMUSG00000000876.11, exon 4 of 4) 15815 ENSMUSG00000000876.11 ENSMUSG00000000876 ENSMUST00000109703 Pxmp4 protein_coding Interval_23578 chr11 23511935 23512856 + 0 NA Intergenic Intergenic 6800 ENSMUSG00000020286.13 ENSMUSG00000020286 ENSMUST00000156629 1700093K21Rik protein_coding Interval_135684 chr6 43315877 43316439 + 0 NA Intergenic Intergenic -11023 ENSMUSG00000029736.15 ENSMUSG00000029736 ENSMUST00000172554 Nobox protein_coding Interval_26854 chr11 61102443 61103172 + 0 NA Intergenic Intergenic -23951 ENSMUSG00000010142.12 ENSMUSG00000010142 ENSMUST00000123378 Tnfrsf13b protein_coding Interval_22777 chr11 15312278 15312540 + 0 NA Intergenic Intergenic -99891 ENSMUSG00000064746.1 ENSMUSG00000064746 ENSMUST00000082812 Gm24707 snRNA Interval_157622 chr8 71779017 71779859 + 0 NA intron (ENSMUSG00000110462.1, intron 1 of 3) lincRNA-intron (ENSMUSG00000110462.1, intron 1 of 3) 1884 ENSMUSG00000110462.1 ENSMUSG00000110462 ENSMUST00000212427 Gm35572 lincRNA Interval_53448 chr14 57574995 57575482 + 0 NA Intergenic Intergenic 3624 ENSMUSG00000097933.2 ENSMUSG00000097933 ENSMUST00000180397 1700039M10Rik bidirectional_promoter_lncRNA Interval_150696 chr7 113477792 113478292 + 0 NA Intergenic Intergenic -29123 ENSMUSG00000109779.1 ENSMUSG00000109779 ENSMUST00000209594 Gm18780 processed_pseudogene Interval_84839 chr19 17356126 17356789 + 0 NA intron (ENSMUSG00000038843.18, intron 1 of 2) protein_coding-intron (ENSMUSG00000038843.18, intron 1 of 1) 16387 ENSMUSG00000038843.18 ENSMUSG00000038843 ENSMUST00000174137 Gcnt1 protein_coding Interval_30823 chr11 96707950 96708173 + 0 NA promoter-TSS (ENSMUSG00000057058.16) protein_coding-promoter-TSS (ENSMUSG00000057058.16) -58741 ENSMUSG00000085242.1 ENSMUSG00000085242 ENSMUST00000124865 Gm11537 antisense Interval_80272 chr18 38680957 38681476 + 0 NA intron (ENSMUSG00000118193.1, intron 1 of 5) lincRNA-intron (ENSMUSG00000118257.1, intron 3 of 3) 4498 ENSMUSG00000118193.1 ENSMUSG00000118193 ENSMUST00000148850 Arhgap26 protein_coding Interval_30238 chr11 91429792 91430167 + 0 NA Intergenic Intergenic 147579 ENSMUSG00000046755.5 ENSMUSG00000046755 ENSMUST00000061019 Kif2b protein_coding Interval_17550 chr10 77674262 77674496 + 0 NA Intergenic Intergenic 6708 ENSMUSG00000112912.1 ENSMUSG00000112912 ENSMUST00000220424 Gm48160 processed_pseudogene Interval_30361 chr11 93867052 93867391 + 0 NA intron (ENSMUSG00000054079.12, intron 9 of 12) protein_coding-intron (ENSMUSG00000054079.12, intron 10 of 13) 8922 ENSMUSG00000054079.12 ENSMUSG00000054079 ENSMUST00000134807 Utp18 protein_coding Interval_98057 chr2 147298168 147298371 + 0 NA intron (ENSMUSG00000086509.2, intron 3 of 5) antisense-intron (ENSMUSG00000086509.2, intron 3 of 5) 8514 ENSMUSG00000084371.1 ENSMUSG00000084371 ENSMUST00000121399 Gm14113 processed_pseudogene Interval_9122 chr1 153777000 153777612 + 0 NA Intergenic Intergenic 25354 ENSMUSG00000066800.11 ENSMUSG00000066800 ENSMUST00000182016 Rnasel protein_coding Interval_83964 chr19 5830190 5831519 + 0 NA exon (ENSMUSG00000092274.3, exon 1 of 1) lincRNA-exon (ENSMUSG00000092274.3, exon 1 of 1) -2842 ENSMUSG00000092274.3 ENSMUSG00000092274 ENSMUST00000174829 Neat1 lincRNA Interval_59692 chr15 58577960 58578944 + 0 NA intron (ENSMUSG00000037106.8, intron 16 of 40) protein_coding-intron (ENSMUSG00000037106.8, intron 16 of 40) 12838 ENSMUSG00000084485.1 ENSMUSG00000084485 ENSMUST00000122536 Gm23789 misc_RNA Interval_26603 chr11 59151712 59152548 + 0 NA Intergenic Intergenic 11570 ENSMUSG00000049287.5 ENSMUSG00000049287 ENSMUST00000137433 Iba57 protein_coding Interval_3610 chr1 59970572 59970813 + 0 NA promoter-TSS (ENSMUSG00000041040.12) protein_coding-promoter-TSS (ENSMUSG00000041040.12) -8489 ENSMUSG00000041040.12 ENSMUSG00000041040 ENSMUST00000189790 Fam117b protein_coding Interval_109211 chr3 137929079 137931505 + 0 NA TTS (ENSMUSG00000028159.14) protein_coding-TTS (ENSMUSG00000028159.14) 4117 ENSMUSG00000091512.5 ENSMUSG00000091512 ENSMUST00000200656 Lamtor3 protein_coding Interval_172049 chr9 124033103 124033929 + 0 NA Intergenic Intergenic 11544 ENSMUSG00000035448.9 ENSMUSG00000035448 ENSMUST00000039171 Ccr3 protein_coding Interval_77170 chr17 87049917 87050230 + 0 NA Intergenic Intergenic 3752 ENSMUSG00000087736.1 ENSMUSG00000087736 ENSMUST00000157111 Gm24648 snoRNA Interval_91002 chr2 34108102 34108969 + 0 NA promoter-TSS (ENSMUSG00000087461.2) lincRNA-promoter-TSS (ENSMUSG00000087461.2) -800 ENSMUSG00000087461.2 ENSMUSG00000087461 ENSMUST00000149707 C230014O12Rik lincRNA Interval_120457 chr4 148742591 148744358 + 0 NA Intergenic Intergenic 29771 ENSMUSG00000087273.1 ENSMUSG00000087273 ENSMUST00000139895 Gm13203 lincRNA Interval_121833 chr5 8653217 8653464 + 0 NA Intergenic Intergenic -16180 ENSMUSG00000105392.1 ENSMUSG00000105392 ENSMUST00000197663 Gm42684 TEC Interval_3407 chr1 58037916 58038534 + 0 NA intron (ENSMUSG00000063558.4, intron 1 of 14) protein_coding-intron (ENSMUSG00000063558.4, intron 1 of 34) 8261 ENSMUSG00000063558.4 ENSMUSG00000063558 ENSMUST00000160168 Aox1 protein_coding Interval_29649 chr11 85818519 85818807 + 0 NA intron (ENSMUSG00000059439.15, intron 11 of 11) protein_coding-intron (ENSMUSG00000059439.15, intron 24 of 24) 13546 ENSMUSG00000087013.7 ENSMUSG00000087013 ENSMUST00000128213 2610027K06Rik processed_transcript Interval_19709 chr10 108236088 108236295 + 0 NA intron (ENSMUSG00000019907.10, intron 5 of 24) protein_coding-intron (ENSMUSG00000019907.10, intron 5 of 25) -13403 ENSMUSG00000019907.10 ENSMUSG00000019907 ENSMUST00000219559 Ppp1r12a protein_coding Interval_44583 chr13 46450414 46451811 + 0 NA Intergenic Intergenic 29290 ENSMUSG00000038132.6 ENSMUSG00000038132 ENSMUST00000225890 Rbm24 protein_coding Interval_87529 chr19 53263982 53264604 + 0 NA intron (ENSMUSG00000118314.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000118314.1, intron 1 of 2) -2338 ENSMUSG00000118350.1 ENSMUSG00000118350 ENSMUST00000237548 Gm36339 processed_pseudogene Interval_150087 chr7 105736008 105737304 + 0 NA promoter-TSS (ENSMUSG00000030890.16) protein_coding-promoter-TSS (ENSMUSG00000030890.16) -69 ENSMUSG00000030890.16 ENSMUSG00000030890 ENSMUST00000130565 Ilk protein_coding Interval_118035 chr4 128537692 128537867 + 0 NA intron (ENSMUSG00000028804.20, intron 56 of 70) protein_coding-intron (ENSMUSG00000028804.20, intron 56 of 70) -14796 ENSMUSG00000028804.20 ENSMUSG00000028804 ENSMUST00000221199 Csmd2 protein_coding Interval_130252 chr5 125215755 125216706 + 0 NA Intergenic Intergenic 56585 ENSMUSG00000105039.1 ENSMUSG00000105039 ENSMUST00000198586 Gm32585 lincRNA Interval_157141 chr8 66284343 66284900 + 0 NA intron (ENSMUSG00000036469.16, intron 2 of 5) protein_coding-intron (ENSMUSG00000036469.16, intron 2 of 5) 102914 ENSMUSG00000086156.1 ENSMUSG00000086156 ENSMUST00000132019 Gm15354 antisense Interval_29282 chr11 82637588 82638103 + 0 NA Intergenic Intergenic 4492 ENSMUSG00000069796.3 ENSMUSG00000069796 ENSMUST00000125600 Gm11426 lincRNA Interval_86113 chr19 36828459 36828688 + 0 NA Intergenic Intergenic 9925 ENSMUSG00000117938.1 ENSMUSG00000117938 ENSMUST00000236351 Gm50112 processed_pseudogene Interval_59109 chr15 44064131 44064323 + 0 NA Intergenic Intergenic -132740 ENSMUSG00000038760.14 ENSMUSG00000038760 ENSMUST00000227505 Trhr protein_coding Interval_164387 chr9 36670705 36671458 + 0 NA intron (ENSMUSG00000098304.2, intron 2 of 2) bidirectional_promoter_lncRNA-intron (ENSMUSG00000098304.2, intron 3 of 3) -1616 ENSMUSG00000111485.1 ENSMUSG00000111485 ENSMUST00000216568 Gm48443 processed_pseudogene Interval_169691 chr9 100400473 100401385 + 0 NA Intergenic Intergenic -3566 ENSMUSG00000100122.1 ENSMUSG00000100122 ENSMUST00000191093 Gm28267 processed_pseudogene Interval_82833 chr18 77279358 77279634 + 0 NA TTS (ENSMUSG00000118108.1) antisense-TTS (ENSMUSG00000118108.1) -2462 ENSMUSG00000032818.16 ENSMUSG00000032818 ENSMUST00000123166 Loxhd1 protein_coding Interval_63933 chr16 4639800 4640467 + 0 NA exon (ENSMUSG00000039646.5, exon 1 of 2) protein_coding-exon (ENSMUSG00000039646.5, exon 1 of 2) 165 ENSMUSG00000039646.5 ENSMUSG00000039646 ENSMUST00000138044 Vasn protein_coding Interval_125928 chr5 75870938 75871585 + 0 NA Intergenic Intergenic -18303 ENSMUSG00000100936.1 ENSMUSG00000100936 ENSMUST00000187685 Gm28865 lincRNA Interval_149864 chr7 102076638 102077411 + 0 NA intron (ENSMUSG00000070425.13, intron 1 of 19) protein_coding-intron (ENSMUSG00000070425.13, intron 4 of 22) 1148 ENSMUSG00000070425.13 ENSMUSG00000070425 ENSMUST00000139104 Xntrpc protein_coding Interval_156884 chr8 61436752 61437346 + 0 NA Intergenic Intergenic -50706 ENSMUSG00000031641.14 ENSMUSG00000031641 ENSMUST00000150932 Cbr4 protein_coding Interval_114876 chr4 86636904 86638526 + 0 NA Intergenic Intergenic -6464 ENSMUSG00000081169.1 ENSMUSG00000081169 ENSMUST00000122073 Gm12551 unprocessed_pseudogene Interval_79744 chr18 34849378 34850571 + 0 NA Intergenic Intergenic 9385 ENSMUSG00000038555.7 ENSMUSG00000038555 ENSMUST00000043484 Reep2 protein_coding Interval_121737 chr5 6100035 6101565 + 0 NA Intergenic Intergenic -85776 ENSMUSG00000088692.1 ENSMUSG00000088692 ENSMUST00000158067 Gm23838 snRNA Interval_31386 chr11 100368815 100370061 + 0 NA exon (ENSMUSG00000001552.14, exon 2 of 2) protein_coding-exon (ENSMUSG00000001552.14, exon 2 of 2) -7312 ENSMUSG00000091478.2 ENSMUSG00000091478 ENSMUST00000081241 Gm10039 processed_pseudogene Interval_100474 chr2 169297993 169298284 + 0 NA Intergenic Intergenic 63147 ENSMUSG00000085369.1 ENSMUSG00000085369 ENSMUST00000152494 9430093N23Rik lincRNA Interval_139209 chr6 97210631 97211506 + 0 NA intron (ENSMUSG00000035199.6, intron 1 of 2) protein_coding-intron (ENSMUSG00000035199.6, intron 1 of 2) 379 ENSMUSG00000035199.6 ENSMUSG00000035199 ENSMUST00000044681 Arl6ip5 protein_coding Interval_70500 chr17 11033084 11033287 + 0 NA intron (ENSMUSG00000023826.16, intron 1 of 10) protein_coding-intron (ENSMUSG00000023826.16, intron 1 of 6) 56283 ENSMUSG00000100402.1 ENSMUSG00000100402 ENSMUST00000190466 Gm28505 antisense Interval_131376 chr5 136793966 136794553 + 0 NA intron (ENSMUSG00000004415.15, intron 3 of 3) protein_coding-intron (ENSMUSG00000004415.15, intron 3 of 12) 44050 ENSMUSG00000004415.15 ENSMUSG00000004415 ENSMUST00000140245 Col26a1 protein_coding Interval_159817 chr8 104050868 104051915 + 0 NA Intergenic Intergenic -19758 ENSMUSG00000110019.1 ENSMUSG00000110019 ENSMUST00000211125 Gm8748 processed_pseudogene Interval_172486 chrX 21139414 21139888 + 0 NA Intergenic Intergenic -7193 ENSMUSG00000083892.3 ENSMUSG00000083892 ENSMUST00000120711 Gm1848 processed_pseudogene Interval_58729 chr15 37421665 37422450 + 0 NA TTS (ENSMUSG00000086992.7) antisense-TTS (ENSMUSG00000086992.7) 809 ENSMUSG00000084316.1 ENSMUSG00000084316 ENSMUST00000120559 Gm8668 processed_pseudogene Interval_58787 chr15 38066426 38067070 + 0 NA intron (ENSMUSG00000037487.7, intron 1 of 58) protein_coding-intron (ENSMUSG00000037487.7, intron 1 of 58) 8463 ENSMUSG00000065852.1 ENSMUSG00000065852 ENSMUST00000083918 Gm22353 snoRNA Interval_30894 chr11 97101626 97102191 + 0 NA intron (ENSMUSG00000001444.2, intron 2 of 5) protein_coding-intron (ENSMUSG00000001444.2, intron 2 of 5) 4975 ENSMUSG00000084068.1 ENSMUSG00000084068 ENSMUST00000119956 Gm11573 processed_pseudogene Interval_160287 chr8 107727236 107727786 + 0 NA Intergenic Intergenic -36667 ENSMUSG00000110508.1 ENSMUSG00000110508 ENSMUST00000212585 Gm8940 processed_pseudogene Interval_141365 chr6 127700960 127701498 + 0 NA intron (ENSMUSG00000030350.8, intron 7 of 9) protein_coding-intron (ENSMUSG00000030350.8, intron 7 of 9) 56789 ENSMUSG00000107253.1 ENSMUSG00000107253 ENSMUST00000202671 Gm43634 lincRNA Interval_169462 chr9 97657804 97658041 + 0 NA intron (ENSMUSG00000032452.12, intron 2 of 16) protein_coding-intron (ENSMUSG00000032452.12, intron 2 of 17) -218295 ENSMUSG00000077208.1 ENSMUSG00000077208 ENSMUST00000104020 Gm25607 snoRNA Interval_129955 chr5 123287815 123288748 + 0 NA intron (ENSMUSG00000029442.18, intron 8 of 11) protein_coding-intron (ENSMUSG00000029442.18, intron 13 of 21) 10153 ENSMUSG00000029442.18 ENSMUSG00000029442 ENSMUST00000125979 Wdr66 protein_coding Interval_25939 chr11 52761981 52762269 + 0 NA Intergenic Intergenic -2509 ENSMUSG00000036264.9 ENSMUSG00000036264 ENSMUST00000036796 Fstl4 protein_coding Interval_97027 chr2 130638083 130638340 + 0 NA promoter-TSS (ENSMUSG00000037703.14) protein_coding-promoter-TSS (ENSMUSG00000037703.14) -116 ENSMUSG00000037703.14 ENSMUSG00000037703 ENSMUST00000045761 Lzts3 protein_coding Interval_67985 chr16 62740692 62741315 + 0 NA intron (ENSMUSG00000050312.12, intron 5 of 5) protein_coding-intron (ENSMUSG00000050312.12, intron 5 of 5) 23966 ENSMUSG00000085783.3 ENSMUSG00000085783 ENSMUST00000122292 Gm9816 processed_pseudogene Interval_73096 chr17 34777870 34778121 + 0 NA intron (ENSMUSG00000092200.2, intron 3 of 18) unprocessed_pseudogene-intron (ENSMUSG00000092200.2, intron 3 of 18) 6600 ENSMUSG00000092200.2 ENSMUSG00000092200 ENSMUST00000173277 Tnxa unprocessed_pseudogene Interval_38289 chr12 76931619 76932103 + 0 NA Intergenic Intergenic 9932 ENSMUSG00000112008.1 ENSMUSG00000112008 ENSMUST00000218256 Gm47218 TEC Interval_9905 chr1 164001560 164002954 + 0 NA Intergenic Intergenic 7368 ENSMUSG00000041396.13 ENSMUSG00000041396 ENSMUST00000111490 Mettl18 protein_coding Interval_33736 chr11 118192994 118194284 + 0 NA exon (ENSMUSG00000017132.17, exon 2 of 13) protein_coding-exon (ENSMUSG00000017132.17, exon 2 of 13) 11540 ENSMUSG00000080810.1 ENSMUSG00000080810 ENSMUST00000118713 Gm11737 processed_pseudogene Interval_118470 chr4 131886369 131886576 + 0 NA intron (ENSMUSG00000028911.16, intron 3 of 5) protein_coding-intron (ENSMUSG00000028911.16, intron 1 of 5) 2177 ENSMUSG00000028911.16 ENSMUSG00000028911 ENSMUST00000030743 Srsf4 protein_coding Interval_10469 chr1 171164317 171164869 + 0 NA Intergenic Intergenic 13880 ENSMUSG00000056569.11 ENSMUSG00000056569 ENSMUST00000125565 Mpz protein_coding Interval_70452 chr17 10326961 10327185 + 0 NA intron (ENSMUSG00000099384.6, intron 2 of 2) lincRNA-intron (ENSMUSG00000099384.6, intron 2 of 2) 2471 ENSMUSG00000099384.6 ENSMUSG00000099384 ENSMUST00000188715 1700110C19Rik lincRNA Interval_164779 chr9 41735035 41737637 + 0 NA intron (ENSMUSG00000110862.1, intron 2 of 4) lincRNA-intron (ENSMUSG00000110862.1, intron 2 of 3) 1062 ENSMUSG00000110862.1 ENSMUSG00000110862 ENSMUST00000214447 Gm35835 lincRNA Interval_51634 chr14 30950874 30952004 + 0 NA promoter-TSS (ENSMUSG00000021918.10) protein_coding-promoter-TSS (ENSMUSG00000021918.10) 28 ENSMUSG00000021918.10 ENSMUSG00000021918 ENSMUST00000226146 Nek4 protein_coding Interval_24911 chr11 41201644 41202731 + 0 NA Intergenic Intergenic -16650 ENSMUSG00000086475.1 ENSMUSG00000086475 ENSMUST00000133945 Platr13 lincRNA Interval_152902 chr7 139595925 139597247 + 0 NA Intergenic Intergenic 10072 ENSMUSG00000049571.18 ENSMUSG00000049571 ENSMUST00000138129 Cfap46 protein_coding Interval_1833 chr1 34064878 34067022 + 0 NA intron (ENSMUSG00000026131.20, intron 1 of 97) protein_coding-intron (ENSMUSG00000026131.20, intron 1 of 97) -11277 ENSMUSG00000026131.20 ENSMUSG00000026131 ENSMUST00000182507 Dst protein_coding Interval_12818 chr10 5812478 5812897 + 0 NA TTS (ENSMUSG00000019774.8) protein_coding-TTS (ENSMUSG00000019774.8) 3068 ENSMUSG00000019774.8 ENSMUSG00000019774 ENSMUST00000145687 Mtrf1l protein_coding Interval_138382 chr6 87763229 87764637 + 0 NA Intergenic Intergenic 2271 ENSMUSG00000068262.4 ENSMUSG00000068262 ENSMUST00000089501 Gm5879 processed_pseudogene Interval_34007 chr11 119955108 119955745 + 0 NA intron (ENSMUSG00000025372.16, intron 1 of 4) protein_coding-intron (ENSMUSG00000025372.16, intron 1 of 13) 12310 ENSMUSG00000025372.16 ENSMUSG00000025372 ENSMUST00000131580 Baiap2 protein_coding Interval_28978 chr11 79686271 79687196 + 0 NA intron (ENSMUSG00000017639.13, intron 10 of 14) protein_coding-intron (ENSMUSG00000017639.13, intron 10 of 14) -11650 ENSMUSG00000086569.1 ENSMUSG00000086569 ENSMUST00000123067 Rab11fip4os2 antisense Interval_65535 chr16 23127274 23128791 + 0 NA promoter-TSS (ENSMUSG00000022881.15) protein_coding-promoter-TSS (ENSMUSG00000022881.15) 239 ENSMUSG00000116733.1 ENSMUSG00000116733 ENSMUST00000231407 6330408M09Rik bidirectional_promoter_lncRNA Interval_173181 chrX 73910952 73911672 + 0 NA promoter-TSS (ENSMUSG00000031389.17) protein_coding-promoter-TSS (ENSMUSG00000031389.17) -41 ENSMUSG00000031389.17 ENSMUSG00000031389 ENSMUST00000123283 Arhgap4 protein_coding Interval_63569 chr15 102099867 102101099 + 0 NA promoter-TSS (ENSMUSG00000037003.16) protein_coding-promoter-TSS (ENSMUSG00000037003.16) -3942 ENSMUSG00000037003.16 ENSMUSG00000037003 ENSMUST00000229800 Tns2 protein_coding Interval_17136 chr10 71934407 71934691 + 0 NA Intergenic Intergenic 36513 ENSMUSG00000077142.1 ENSMUSG00000077142 ENSMUST00000103954 Gm22937 snoRNA Interval_138538 chr6 89013798 89014247 + 0 NA intron (ENSMUSG00000055403.13, intron 1 of 2) lincRNA-intron (ENSMUSG00000055403.13, intron 1 of 2) 63339 ENSMUSG00000055403.13 ENSMUSG00000055403 ENSMUST00000153981 4933427D06Rik lincRNA Interval_142596 chr6 143797837 143798053 + 0 NA Intergenic Intergenic -146657 ENSMUSG00000086887.1 ENSMUSG00000086887 ENSMUST00000150559 1700060C16Rik lincRNA Interval_59954 chr15 62198004 62198342 + 0 NA intron (ENSMUSG00000097039.8, intron 1 of 3) lincRNA-intron (ENSMUSG00000097039.8, intron 5 of 8) 21159 ENSMUSG00000101167.1 ENSMUSG00000101167 ENSMUST00000151919 Macroh2a3 processed_pseudogene Interval_155880 chr8 40588564 40588811 + 0 NA intron (ENSMUSG00000039431.16, intron 5 of 11) protein_coding-intron (ENSMUSG00000039431.16, intron 5 of 14) 45263 ENSMUSG00000031600.11 ENSMUSG00000031600 ENSMUST00000238628 Vps37a protein_coding Interval_127936 chr5 109552551 109554963 + 0 NA TTS (ENSMUSG00000033467.12) protein_coding-TTS (ENSMUSG00000033467.12) 399 ENSMUSG00000106028.1 ENSMUSG00000106028 ENSMUST00000196881 Gm8493 unprocessed_pseudogene Interval_135241 chr6 37751323 37751562 + 0 NA Intergenic Intergenic -54644 ENSMUSG00000080242.5 ENSMUSG00000080242 ENSMUST00000122373 Atp6v0c-ps2 processed_pseudogene Interval_184 JH792828.1 210367 211807 + 0 NA NA NA NA NA Interval_56997 chr15 3742330 3742681 + 0 NA Intergenic Intergenic 4370 ENSMUSG00000098177.1 ENSMUSG00000098177 ENSMUST00000181990 Gm4823 processed_pseudogene Interval_167843 chr9 73027434 73028942 + 0 NA TTS (ENSMUSG00000079469.10) protein_coding-TTS (ENSMUSG00000079469.10) 3895 ENSMUSG00000102305.1 ENSMUSG00000102305 ENSMUST00000194364 Gm38192 TEC Interval_111932 chr4 32651631 32651931 + 0 NA intron (ENSMUSG00000028282.12, intron 10 of 10) protein_coding-intron (ENSMUSG00000028282.12, intron 10 of 10) 4307 ENSMUSG00000081592.1 ENSMUSG00000081592 ENSMUST00000118323 Gm11936 processed_pseudogene Interval_71718 chr17 25664406 25664658 + 0 NA Intergenic Intergenic 29688 ENSMUSG00000096451.1 ENSMUSG00000096451 ENSMUST00000180010 Gm22645 snRNA Interval_34335 chr12 3447877 3449429 + 0 NA intron (ENSMUSG00000037486.18, intron 3 of 11) protein_coding-intron (ENSMUSG00000037486.18, intron 3 of 10) 10138 ENSMUSG00000118499.1 ENSMUSG00000118499 ENSMUST00000239031 AC160138.1 processed_pseudogene Interval_69398 chr16 92685268 92686336 + 0 NA TTS (ENSMUSG00000022952.17) protein_coding-TTS (ENSMUSG00000022952.17) 72988 ENSMUSG00000097139.3 ENSMUSG00000097139 ENSMUST00000180989 Gm26626 antisense Interval_146033 chr7 43335813 43336260 + 0 NA Intergenic Intergenic -8514 ENSMUSG00000108300.1 ENSMUSG00000108300 ENSMUST00000206010 Gm44539 processed_pseudogene Interval_33121 chr11 114580043 114580537 + 0 NA Intergenic Intergenic -84318 ENSMUSG00000083769.1 ENSMUSG00000083769 ENSMUST00000120766 Gm11689 processed_pseudogene Interval_122716 chr5 24848177 24848727 + 0 NA Intergenic Intergenic -5843 ENSMUSG00000028945.9 ENSMUSG00000028945 ENSMUST00000196039 Rheb protein_coding Interval_34379 chr12 3732628 3733509 + 0 NA intron (ENSMUSG00000071454.13, intron 11 of 20) protein_coding-intron (ENSMUSG00000071454.13, intron 11 of 18) 29078 ENSMUSG00000092286.1 ENSMUSG00000092286 ENSMUST00000173847 Dtnbos antisense Interval_110272 chr3 155251605 155252770 + 0 NA Intergenic Intergenic 24536 ENSMUSG00000103511.1 ENSMUSG00000103511 ENSMUST00000193089 Gm5285 processed_pseudogene Interval_44303 chr13 43500078 43502022 + 0 NA promoter-TSS (ENSMUSG00000113891.1) lincRNA-promoter-TSS (ENSMUSG00000113891.1) -883 ENSMUSG00000113891.1 ENSMUSG00000113891 ENSMUST00000221151 Gm47683 lincRNA Interval_50247 chr14 11244277 11244933 + 0 NA Intergenic Intergenic 17053 ENSMUSG00000072714.2 ENSMUSG00000072714 ENSMUST00000080237 Rpl21-ps4 processed_pseudogene Interval_117454 chr4 123798009 123798214 + 0 NA promoter-TSS (ENSMUSG00000043333.12) protein_coding-promoter-TSS (ENSMUSG00000043333.12) -94 ENSMUSG00000043333.12 ENSMUSG00000043333 ENSMUST00000148797 Rhbdl2 protein_coding Interval_527 chr1 7013601 7013878 + 0 NA promoter-TSS (ENSMUSG00000102213.1) processed_pseudogene-promoter-TSS (ENSMUSG00000102213.1) -23 ENSMUSG00000102213.1 ENSMUSG00000102213 ENSMUST00000191883 Gm37489 processed_pseudogene Interval_68476 chr16 77760468 77760661 + 0 NA intron (ENSMUSG00000090386.10, intron 4 of 4) processed_transcript-intron (ENSMUSG00000090386.10, intron 4 of 4) 75287 ENSMUSG00000102562.1 ENSMUSG00000102562 ENSMUST00000191696 Gm37694 TEC Interval_118828 chr4 133920804 133921414 + 0 NA Intergenic Intergenic -34826 ENSMUSG00000003644.17 ENSMUSG00000003644 ENSMUST00000173961 Rps6ka1 protein_coding Interval_145404 chr7 34519655 34519873 + 0 NA intron (ENSMUSG00000085124.1, intron 2 of 2) lincRNA-intron (ENSMUSG00000085124.1, intron 2 of 2) -23699 ENSMUSG00000081863.1 ENSMUSG00000081863 ENSMUST00000122458 Gm12780 processed_pseudogene Interval_9705 chr1 161170340 161171242 + 0 NA TTS (ENSMUSG00000044835.15) protein_coding-TTS (ENSMUSG00000044835.15) -11477 ENSMUSG00000049160.15 ENSMUSG00000049160 ENSMUST00000178511 Tex50 protein_coding Interval_36984 chr12 55883750 55884101 + 0 NA Intergenic Intergenic 26998 ENSMUSG00000065244.1 ENSMUSG00000065244 ENSMUST00000083310 Gm22296 snRNA Interval_173343 chrX 82298950 82299298 + 0 NA Intergenic Intergenic 101885 ENSMUSG00000083113.1 ENSMUSG00000083113 ENSMUST00000117120 Rpl10-ps4 processed_pseudogene Interval_22005 chr11 5728048 5729176 + 0 NA intron (ENSMUSG00000049680.17, intron 1 of 5) protein_coding-intron (ENSMUSG00000049680.17, intron 1 of 4) -20925 ENSMUSG00000020477.10 ENSMUSG00000020477 ENSMUST00000123697 Mrps24 protein_coding Interval_97622 chr2 140853845 140854413 + 0 NA intron (ENSMUSG00000068205.14, intron 4 of 16) protein_coding-intron (ENSMUSG00000068205.14, intron 4 of 17) 102120 ENSMUSG00000081731.1 ENSMUSG00000081731 ENSMUST00000121776 Calr-ps processed_pseudogene Interval_114618 chr4 83246925 83247223 + 0 NA TTS (ENSMUSG00000038172.14) protein_coding-TTS (ENSMUSG00000038172.14) 38095 ENSMUSG00000038172.14 ENSMUSG00000038172 ENSMUST00000148811 Ttc39b protein_coding Interval_97738 chr2 143660662 143661258 + 0 NA intron (ENSMUSG00000027419.9, intron 2 of 11) protein_coding-intron (ENSMUSG00000027419.9, intron 2 of 11) 114689 ENSMUSG00000027419.9 ENSMUSG00000027419 ENSMUST00000124751 Pcsk2 protein_coding Interval_69020 chr16 90159617 90159970 + 0 NA Intergenic Intergenic -3387 ENSMUSG00000116553.1 ENSMUSG00000116553 ENSMUST00000231626 Gm7307 processed_pseudogene Interval_21979 chr11 5520615 5522259 + 0 NA promoter-TSS (ENSMUSG00000020484.19) protein_coding-promoter-TSS (ENSMUSG00000020484.19) 442 ENSMUSG00000020484.19 ENSMUSG00000020484 ENSMUST00000149159 Xbp1 protein_coding Interval_162930 chr9 13510063 13510432 + 0 NA intron (ENSMUSG00000031925.17, intron 1 of 4) protein_coding-intron (ENSMUSG00000031925.17, intron 1 of 4) -9689 ENSMUSG00000111223.1 ENSMUSG00000111223 ENSMUST00000213741 Gm47089 TEC Interval_89104 chr2 16398842 16399231 + 0 NA intron (ENSMUSG00000026748.13, intron 1 of 12) protein_coding-intron (ENSMUSG00000026748.13, intron 1 of 13) -239660 ENSMUSG00000026748.13 ENSMUSG00000026748 ENSMUST00000126173 Plxdc2 protein_coding Interval_37110 chr12 58499389 58499872 + 0 NA Intergenic Intergenic -230340 ENSMUSG00000045930.3 ENSMUSG00000045930 ENSMUST00000062254 Clec14a protein_coding Interval_2495 chr1 39742322 39743238 + 0 NA Intergenic Intergenic -21783 ENSMUSG00000057173.8 ENSMUSG00000057173 ENSMUST00000126760 Rfx8 protein_coding Interval_160631 chr8 111198730 111199371 + 0 NA intron (ENSMUSG00000003316.14, intron 3 of 25) protein_coding-intron (ENSMUSG00000003316.14, intron 2 of 24) 4086 ENSMUSG00000076382.1 ENSMUSG00000076382 ENSMUST00000102427 Gm23193 miRNA Interval_25814 chr11 51887753 51888111 + 0 NA Intergenic Intergenic -11034 ENSMUSG00000110618.1 ENSMUSG00000110618 ENSMUST00000212253 Gm39822 lincRNA Interval_70013 chr17 4474570 4474915 + 0 NA Intergenic Intergenic -160236 ENSMUSG00000116767.1 ENSMUSG00000116767 ENSMUST00000232624 4930517M08Rik lincRNA Interval_5434 chr1 88752241 88752452 + 0 NA Intergenic Intergenic -2544 ENSMUSG00000097398.2 ENSMUSG00000097398 ENSMUST00000180596 Platr5 lincRNA Interval_4350 chr1 72870280 72874264 + 0 NA intron (ENSMUSG00000026185.8, intron 1 of 5) protein_coding-intron (ENSMUSG00000026185.8, intron 1 of 3) 2003 ENSMUSG00000026185.8 ENSMUSG00000026185 ENSMUST00000137339 Igfbp5 protein_coding Interval_113303 chr4 53271331 53271611 + 0 NA Intergenic Intergenic -5979 ENSMUSG00000086712.2 ENSMUSG00000086712 ENSMUST00000123044 AI427809 lincRNA Interval_18047 chr10 81534647 81535418 + 0 NA intron (ENSMUSG00000034781.5, intron 1 of 1) protein_coding-intron (ENSMUSG00000034781.5, intron 2 of 6) -3017 ENSMUSG00000034781.5 ENSMUSG00000034781 ENSMUST00000134354 Gna11 protein_coding Interval_93336 chr2 72041779 72042485 + 0 NA intron (ENSMUSG00000049044.16, intron 3 of 5) protein_coding-intron (ENSMUSG00000049044.16, intron 3 of 30) -42340 ENSMUSG00000088297.1 ENSMUSG00000088297 ENSMUST00000157672 Gm26408 snoRNA Interval_105030 chr3 79906882 79908956 + 0 NA intron (ENSMUSG00000027955.16, intron 2 of 4) protein_coding-intron (ENSMUSG00000027955.16, intron 1 of 3) -21113 ENSMUSG00000102191.1 ENSMUSG00000102191 ENSMUST00000195082 Gm36569 antisense Interval_44835 chr13 48982771 48983018 + 0 NA Intergenic Intergenic -14877 ENSMUSG00000038014.7 ENSMUSG00000038014 ENSMUST00000060805 Fam120a protein_coding Interval_78445 chr18 12889754 12890076 + 0 NA promoter-TSS (ENSMUSG00000044252.18) protein_coding-promoter-TSS (ENSMUSG00000044252.18) -8512 ENSMUSG00000080866.1 ENSMUSG00000080866 ENSMUST00000118252 Gm5687 processed_pseudogene Interval_144308 chr7 24412540 24413905 + 0 NA intron (ENSMUSG00000002210.11, intron 6 of 13) protein_coding-intron (ENSMUSG00000002210.11, intron 6 of 13) -1511 ENSMUSG00000002210.11 ENSMUSG00000002210 ENSMUST00000146686 Smg9 protein_coding Interval_27490 chr11 68195931 68196382 + 0 NA promoter-TSS (ENSMUSG00000087242.2) antisense-promoter-TSS (ENSMUSG00000087242.2) -3 ENSMUSG00000087242.2 ENSMUSG00000087242 ENSMUST00000152781 C78197 antisense Interval_123744 chr5 35098384 35098919 + 0 NA intron (ENSMUSG00000029103.16, intron 3 of 6) protein_coding-intron (ENSMUSG00000029103.16, intron 3 of 7) 3863 ENSMUSG00000029103.16 ENSMUSG00000029103 ENSMUST00000132754 Lrpap1 protein_coding Interval_117132 chr4 119852610 119853329 + 0 NA intron (ENSMUSG00000028634.17, intron 1 of 1) protein_coding-intron (ENSMUSG00000028634.17, intron 1 of 8) -179797 ENSMUSG00000028634.17 ENSMUSG00000028634 ENSMUST00000166542 Hivep3 protein_coding Interval_140939 chr6 122879714 122880714 + 0 NA intron (ENSMUSG00000030327.8, intron 1 of 2) protein_coding-intron (ENSMUSG00000030327.8, intron 1 of 7) 5665 ENSMUSG00000030327.8 ENSMUSG00000030327 ENSMUST00000203476 Necap1 protein_coding Interval_141075 chr6 124828325 124830547 + 0 NA promoter-TSS (ENSMUSG00000023505.13) protein_coding-promoter-TSS (ENSMUSG00000023505.13) -939 ENSMUSG00000023505.13 ENSMUSG00000023505 ENSMUST00000151674 Cdca3 protein_coding Interval_20281 chr10 116641572 116641959 + 0 NA Intergenic Intergenic 2473 ENSMUSG00000112436.1 ENSMUSG00000112436 ENSMUST00000218860 Gm48403 processed_pseudogene Interval_162818 chr9 9510212 9510659 + 0 NA intron (ENSMUSG00000111061.1, intron 2 of 3) lincRNA-intron (ENSMUSG00000111061.1, intron 2 of 3) -53652 ENSMUSG00000111284.1 ENSMUSG00000111284 ENSMUST00000215363 Gm47334 lincRNA Interval_85447 chr19 26604409 26608762 + 0 NA promoter-TSS (ENSMUSG00000024921.17) protein_coding-promoter-TSS (ENSMUSG00000024921.17) 16825 ENSMUSG00000093628.1 ENSMUSG00000093628 ENSMUST00000177453 Gm20616 antisense Interval_18639 chr10 88746797 88747658 + 0 NA intron (ENSMUSG00000004356.8, intron 1 of 1) protein_coding-intron (ENSMUSG00000004356.8, intron 61 of 61) -16126 ENSMUSG00000069540.4 ENSMUSG00000069540 ENSMUST00000092231 Gm4925 transcribed_processed_pseudogene Interval_39825 chr12 98757499 98757844 + 0 NA intron (ENSMUSG00000021012.16, intron 4 of 4) protein_coding-intron (ENSMUSG00000021012.16, intron 5 of 13) -2172 ENSMUSG00000021012.16 ENSMUSG00000021012 ENSMUST00000220660 Zc3h14 protein_coding Interval_83281 chr18 83399099 83400622 + 0 NA promoter-TSS (ENSMUSG00000117715.1) lincRNA-promoter-TSS (ENSMUSG00000117715.1) -239 ENSMUSG00000117715.1 ENSMUSG00000117715 ENSMUST00000236434 Gm50413 lincRNA Interval_95491 chr2 110163382 110163634 + 0 NA intron (ENSMUSG00000027160.16, intron 2 of 2) protein_coding-intron (ENSMUSG00000027160.16, intron 2 of 2) -33381 ENSMUSG00000085444.1 ENSMUSG00000085444 ENSMUST00000130416 Gm13936 antisense Interval_108120 chr3 121636673 121637035 + 0 NA TTS (ENSMUSG00000044522.8) lincRNA-TTS (ENSMUSG00000044522.8) 6513 ENSMUSG00000044522.8 ENSMUSG00000044522 ENSMUST00000198402 A730020M07Rik lincRNA Interval_70256 chr17 7283789 7283987 + 0 NA intron (ENSMUSG00000023809.10, intron 14 of 20) protein_coding-intron (ENSMUSG00000023809.10, intron 14 of 20) 31958 ENSMUSG00000116935.1 ENSMUSG00000116935 ENSMUST00000231254 Gpr31a processed_pseudogene Interval_152470 chr7 133184897 133186625 + 0 NA Intergenic Intergenic 57510 ENSMUSG00000109816.1 ENSMUSG00000109816 ENSMUST00000209850 4930483O08Rik lincRNA Interval_143412 chr7 6514565 6515895 + 0 NA exon (ENSMUSG00000048067.8, exon 1 of 1) protein_coding-exon (ENSMUSG00000048067.8, exon 1 of 1) 2995 ENSMUSG00000084654.1 ENSMUSG00000084654 ENSMUST00000122705 n-R5s150 rRNA Interval_6194 chr1 100877952 100878782 + 0 NA Intergenic Intergenic 16574 ENSMUSG00000077039.1 ENSMUSG00000077039 ENSMUST00000103851 Gm25537 miRNA Interval_72024 chr17 27618244 27618505 + 0 NA intron (ENSMUSG00000117338.1, intron 5 of 8) protein_coding-intron (ENSMUSG00000024213.14, intron 1 of 4) -5123 ENSMUSG00000116571.1 ENSMUSG00000116571 ENSMUST00000231767 Gm49741 bidirectional_promoter_lncRNA Interval_2654 chr1 42968358 42968573 + 0 NA intron (ENSMUSG00000041907.9, intron 1 of 1) protein_coding-intron (ENSMUSG00000041907.9, intron 1 of 1) 15593 ENSMUSG00000041907.9 ENSMUSG00000041907 ENSMUST00000114761 Gpr45 protein_coding Interval_138373 chr6 87715632 87716013 + 0 NA intron (ENSMUSG00000089997.2, intron 4 of 15) protein_coding-intron (ENSMUSG00000089997.2, intron 4 of 15) 6979 ENSMUSG00000089997.2 ENSMUSG00000089997 ENSMUST00000238521 1810020O05Rik protein_coding Interval_163276 chr9 20498463 20498828 + 0 NA TTS (ENSMUSG00000060510.14) protein_coding-TTS (ENSMUSG00000060510.14) -5903 ENSMUSG00000059475.13 ENSMUSG00000059475 ENSMUST00000164250 Zfp426 protein_coding Interval_164336 chr9 35453240 35453767 + 0 NA intron (ENSMUSG00000038119.15, intron 4 of 10) protein_coding-intron (ENSMUSG00000038119.15, intron 2 of 18) -21382 ENSMUSG00000065934.1 ENSMUSG00000065934 ENSMUST00000084000 Gm25630 snRNA Interval_149184 chr7 96098458 96098740 + 0 NA Intergenic Intergenic 104937 ENSMUSG00000108528.1 ENSMUSG00000108528 ENSMUST00000205708 Gm8319 processed_pseudogene Interval_111112 chr4 12133597 12133864 + 0 NA Intergenic Intergenic -1755 ENSMUSG00000082676.1 ENSMUSG00000082676 ENSMUST00000118984 Gm11843 processed_pseudogene Interval_1267 chr1 18706824 18707029 + 0 NA Intergenic Intergenic -1502 ENSMUSG00000101306.1 ENSMUSG00000101306 ENSMUST00000189030 Gm5252 processed_pseudogene Interval_140065 chr6 113740020 113741016 + 0 NA exon (ENSMUSG00000030298.10, exon 1 of 1) protein_coding-exon (ENSMUSG00000030298.10, exon 1 of 1) 209 ENSMUSG00000030298.10 ENSMUSG00000030298 ENSMUST00000205135 Sec13 protein_coding Interval_87110 chr19 46175395 46175605 + 0 NA intron (ENSMUSG00000025224.16, intron 3 of 18) protein_coding-intron (ENSMUSG00000025224.16, intron 3 of 39) 22920 ENSMUSG00000025224.16 ENSMUSG00000025224 ENSMUST00000176046 Gbf1 protein_coding Interval_102405 chr3 24150824 24151991 + 0 NA intron (ENSMUSG00000102758.3, intron 9 of 13) protein_coding-intron (ENSMUSG00000102758.3, intron 9 of 13) -181661 ENSMUSG00000057036.7 ENSMUSG00000057036 ENSMUST00000077389 Gm7536 processed_pseudogene Interval_43107 chr13 24155010 24155781 + 0 NA promoter-TSS (ENSMUSG00000021338.17) protein_coding-promoter-TSS (ENSMUSG00000021338.17) -40502 ENSMUSG00000081707.1 ENSMUSG00000081707 ENSMUST00000120579 Gm11343 processed_pseudogene Interval_41221 chr12 111907437 111908765 + 0 NA promoter-TSS (ENSMUSG00000021285.15) protein_coding-promoter-TSS (ENSMUSG00000021285.15) -482 ENSMUSG00000021285.15 ENSMUSG00000021285 ENSMUST00000220927 Ppp1r13b protein_coding Interval_67730 chr16 56524349 56525125 + 0 NA intron (ENSMUSG00000035258.15, intron 1 of 35) protein_coding-intron (ENSMUSG00000035258.15, intron 1 of 39) 46837 ENSMUSG00000035258.15 ENSMUSG00000035258 ENSMUST00000096012 Abi3bp protein_coding Interval_7184 chr1 127575473 127575853 + 0 NA intron (ENSMUSG00000026347.13, intron 2 of 7) protein_coding-intron (ENSMUSG00000026347.13, intron 2 of 8) 103885 ENSMUSG00000026347.13 ENSMUSG00000026347 ENSMUST00000162406 Tmem163 protein_coding Interval_148088 chr7 79154352 79155025 + 0 NA Intergenic Intergenic -6457 ENSMUSG00000030605.15 ENSMUSG00000030605 ENSMUST00000206844 Mfge8 protein_coding Interval_160277 chr8 107642070 107642949 + 0 NA Intergenic Intergenic 48335 ENSMUSG00000110508.1 ENSMUSG00000110508 ENSMUST00000212585 Gm8940 processed_pseudogene Interval_112663 chr4 43925713 43926394 + 0 NA intron (ENSMUSG00000028476.13, intron 12 of 21) protein_coding-intron (ENSMUSG00000028476.13, intron 12 of 20) -14345 ENSMUSG00000028476.13 ENSMUSG00000028476 ENSMUST00000130415 Reck protein_coding Interval_64377 chr16 10940205 10940974 + 0 NA Intergenic Intergenic -2225 ENSMUSG00000117309.1 ENSMUSG00000117309 ENSMUST00000233200 Gm49960 transcribed_unitary_pseudogene Interval_77961 chr18 6166035 6166607 + 0 NA Intergenic Intergenic -47592 ENSMUSG00000091165.1 ENSMUSG00000091165 ENSMUST00000168187 Gm17036 antisense Interval_173601 chrX 100739020 100740175 + 0 NA TTS (ENSMUSG00000019359.14) protein_coding-TTS (ENSMUSG00000019359.14) 1332 ENSMUSG00000085314.1 ENSMUSG00000085314 ENSMUST00000149206 Gm14866 processed_transcript Interval_60977 chr15 78436464 78438158 + 0 NA exon (ENSMUSG00000033287.16, exon 4 of 4) protein_coding-exon (ENSMUSG00000033287.16, exon 4 of 4) 7068 ENSMUSG00000016942.6 ENSMUSG00000016942 ENSMUST00000229124 Tmprss6 protein_coding Interval_57811 chr15 21197349 21198673 + 0 NA intron (ENSMUSG00000040452.9, intron 2 of 12) protein_coding-intron (ENSMUSG00000040452.9, intron 1 of 11) 17854 ENSMUSG00000103296.1 ENSMUSG00000103296 ENSMUST00000195204 Gm38234 TEC Interval_93643 chr2 75533409 75533817 + 0 NA Intergenic Intergenic -68825 ENSMUSG00000086576.1 ENSMUSG00000086576 ENSMUST00000142828 Gm13660 lincRNA Interval_81569 chr18 61746530 61747307 + 0 NA intron (ENSMUSG00000033032.15, intron 5 of 15) protein_coding-intron (ENSMUSG00000033032.15, intron 8 of 18) 20485 ENSMUSG00000098702.1 ENSMUSG00000098702 ENSMUST00000184530 1500015A07Rik antisense Interval_118638 chr4 132934147 132935070 + 0 NA Intergenic Intergenic -3291 ENSMUSG00000087911.1 ENSMUSG00000087911 ENSMUST00000157286 Gm24913 snRNA Interval_121377 chr4 155351024 155351586 + 0 NA intron (ENSMUSG00000029053.16, intron 4 of 17) protein_coding-intron (ENSMUSG00000029053.16, intron 4 of 17) -6565 ENSMUSG00000029053.16 ENSMUSG00000029053 ENSMUST00000105624 Prkcz protein_coding Interval_158246 chr8 80483015 80483488 + 0 NA Intergenic Intergenic -10530 ENSMUSG00000051839.7 ENSMUSG00000051839 ENSMUST00000063359 Gypa protein_coding Interval_122689 chr5 24674149 24674682 + 0 NA Intergenic Intergenic -11572 ENSMUSG00000028954.11 ENSMUSG00000028954 ENSMUST00000200337 Nub1 protein_coding Interval_174559 chrX 157769407 157769629 + 0 NA intron (ENSMUSG00000086188.1, intron 1 of 1) antisense-intron (ENSMUSG00000086188.1, intron 1 of 1) 28501 ENSMUSG00000086188.1 ENSMUSG00000086188 ENSMUST00000126095 Gm15169 antisense Interval_104623 chr3 68902320 68902751 + 0 NA TTS (ENSMUSG00000093730.1) processed_pseudogene-TTS (ENSMUSG00000093730.1) 223 ENSMUSG00000093402.1 ENSMUSG00000093402 ENSMUST00000177308 Gm18588 processed_pseudogene Interval_139079 chr6 94849243 94850852 + 0 NA Intergenic Intergenic -1214 ENSMUSG00000107940.1 ENSMUSG00000107940 ENSMUST00000204329 Gm44100 processed_pseudogene Interval_37526 chr12 69575907 69576474 + 0 NA Intergenic Intergenic 6920 ENSMUSG00000049882.10 ENSMUSG00000049882 ENSMUST00000238563 Vcpkmt protein_coding Interval_130286 chr5 125420888 125421395 + 0 NA intron (ENSMUSG00000029480.13, intron 15 of 26) protein_coding-intron (ENSMUSG00000029480.13, intron 15 of 26) 5591 ENSMUSG00000029480.13 ENSMUSG00000029480 ENSMUST00000198746 Dhx37 protein_coding Interval_53337 chr14 56375873 56376171 + 0 NA promoter-TSS (ENSMUSG00000022229.3) protein_coding-promoter-TSS (ENSMUSG00000022229.3) 24 ENSMUSG00000022229.3 ENSMUSG00000022229 ENSMUST00000225698 Atp12a protein_coding Interval_172767 chrX 48452701 48455168 + 0 NA exon (ENSMUSG00000031103.12, exon 1 of 9) protein_coding-exon (ENSMUSG00000031103.12, exon 1 of 9) 9198 ENSMUSG00000031103.12 ENSMUSG00000031103 ENSMUST00000140486 Elf4 protein_coding Interval_35309 chr12 20372212 20374030 + 0 NA Intergenic Intergenic -42816 ENSMUSG00000112951.2 ENSMUSG00000112951 ENSMUST00000223397 Gm49929 unprocessed_pseudogene Interval_106078 chr3 92679304 92679539 + 0 NA intron (ENSMUSG00000042092.5, intron 1 of 1) protein_coding-intron (ENSMUSG00000042092.5, intron 1 of 1) 174 ENSMUSG00000042092.5 ENSMUSG00000042092 ENSMUST00000047055 Lce1c protein_coding Interval_113989 chr4 62286118 62287980 + 0 NA intron (ENSMUSG00000066152.11, intron 1 of 3) protein_coding-intron (ENSMUSG00000066152.11, intron 1 of 3) 22735 ENSMUSG00000096713.1 ENSMUSG00000096713 ENSMUST00000180367 Gm23148 snRNA Interval_172987 chrX 60162705 60163254 + 0 NA intron (ENSMUSG00000031139.16, intron 1 of 27) protein_coding-intron (ENSMUSG00000031139.16, intron 1 of 27) -15279 ENSMUSG00000031139.16 ENSMUSG00000031139 ENSMUST00000033478 Mcf2 protein_coding Interval_109280 chr3 138601214 138602585 + 0 NA exon (ENSMUSG00000104680.1, exon 1 of 1) processed_pseudogene-exon (ENSMUSG00000104680.1, exon 1 of 1) 767 ENSMUSG00000104680.1 ENSMUSG00000104680 ENSMUST00000200462 Gm9415 processed_pseudogene Interval_138270 chr6 86748595 86749630 + 0 NA intron (ENSMUSG00000029994.17, intron 9 of 12) protein_coding-intron (ENSMUSG00000029994.17, intron 8 of 12) 15623 ENSMUSG00000107961.1 ENSMUSG00000107961 ENSMUST00000204551 Gm44036 lincRNA Interval_152660 chr7 135817976 135818178 + 0 NA intron (ENSMUSG00000109831.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000109831.1, intron 1 of 2) -35605 ENSMUSG00000109898.1 ENSMUSG00000109898 ENSMUST00000211371 6330420H09Rik lincRNA Interval_20171 chr10 115384192 115385842 + 0 NA promoter-TSS (ENSMUSG00000020137.5) protein_coding-promoter-TSS (ENSMUSG00000020137.5) -574 ENSMUSG00000020137.5 ENSMUSG00000020137 ENSMUST00000218989 Thap2 protein_coding Interval_167613 chr9 71154462 71156541 + 0 NA intron (ENSMUSG00000032204.13, intron 1 of 6) protein_coding-intron (ENSMUSG00000032204.13, intron 1 of 5) 13181 ENSMUSG00000032204.13 ENSMUSG00000032204 ENSMUST00000138364 Aqp9 protein_coding Interval_25553 chr11 49732762 49732979 + 0 NA Intergenic Intergenic 34990 ENSMUSG00000081570.1 ENSMUSG00000081570 ENSMUST00000120146 Gm12192 processed_pseudogene Interval_13583 chr10 19948136 19948707 + 0 NA intron (ENSMUSG00000071369.11, intron 1 of 6) protein_coding-intron (ENSMUSG00000071369.11, intron 1 of 29) -40770 ENSMUSG00000020003.16 ENSMUSG00000020003 ENSMUST00000214951 Pex7 protein_coding Interval_123356 chr5 31679059 31679342 + 0 NA intron (ENSMUSG00000029136.9, intron 1 of 7) protein_coding-intron (ENSMUSG00000029136.9, intron 1 of 7) 6893 ENSMUSG00000029136.9 ENSMUSG00000029136 ENSMUST00000202036 Rbks protein_coding Interval_102510 chr3 27370238 27372570 + 0 NA promoter-TSS (ENSMUSG00000051136.1) protein_coding-promoter-TSS (ENSMUSG00000051136.1) 53 ENSMUSG00000051136.1 ENSMUSG00000051136 ENSMUST00000057186 Ghsr protein_coding Interval_57566 chr15 12423928 12425653 + 0 NA intron (ENSMUSG00000022197.16, intron 5 of 7) protein_coding-intron (ENSMUSG00000022197.16, intron 5 of 23) -12410 ENSMUSG00000022197.16 ENSMUSG00000022197 ENSMUST00000189746 Pdzd2 protein_coding Interval_154282 chr8 14011745 14013026 + 0 NA Intergenic Intergenic 13445 ENSMUSG00000110058.1 ENSMUSG00000110058 ENSMUST00000210969 Gm5907 lincRNA Interval_93076 chr2 69957661 69957922 + 0 NA intron (ENSMUSG00000044308.17, intron 18 of 38) protein_coding-intron (ENSMUSG00000044308.17, intron 18 of 38) -30995 ENSMUSG00000044308.17 ENSMUSG00000044308 ENSMUST00000123890 Ubr3 protein_coding Interval_78380 chr18 12328773 12329669 + 0 NA Intergenic Intergenic -36578 ENSMUSG00000099663.1 ENSMUSG00000099663 ENSMUST00000189120 Gm29201 processed_pseudogene Interval_55661 chr14 98511155 98511569 + 0 NA Intergenic Intergenic 8338 ENSMUSG00000115486.1 ENSMUSG00000115486 ENSMUST00000226609 Gm49017 processed_pseudogene Interval_160634 chr8 111233292 111233937 + 0 NA intron (ENSMUSG00000003316.14, intron 1 of 25) protein_coding-intron (ENSMUSG00000003316.14, intron 1 of 24) 25602 ENSMUSG00000003316.14 ENSMUSG00000003316 ENSMUST00000003404 Glg1 protein_coding Interval_112085 chr4 34566994 34567865 + 0 NA TTS (ENSMUSG00000028291.7) protein_coding-TTS (ENSMUSG00000028291.7) 16478 ENSMUSG00000028291.7 ENSMUSG00000028291 ENSMUST00000132230 Akirin2 protein_coding Interval_127000 chr5 99401878 99402283 + 0 NA intron (ENSMUSG00000089809.9, intron 3 of 16) protein_coding-intron (ENSMUSG00000089809.9, intron 2 of 3) -106309 ENSMUSG00000104753.1 ENSMUSG00000104753 ENSMUST00000196037 Gm35172 lincRNA Interval_47952 chr13 94595500 94596853 + 0 NA Intergenic Intergenic -23104 ENSMUSG00000103438.1 ENSMUSG00000103438 ENSMUST00000191800 Gm36991 TEC Interval_72511 chr17 30326681 30327616 + 0 NA intron (ENSMUSG00000062202.14, intron 3 of 7) protein_coding-intron (ENSMUSG00000062202.14, intron 7 of 11) 16069 ENSMUSG00000089222.1 ENSMUSG00000089222 ENSMUST00000158597 Gm25049 snRNA Interval_168775 chr9 86902568 86903132 + 0 NA Intergenic Intergenic -22411 ENSMUSG00000033419.16 ENSMUSG00000033419 ENSMUST00000191290 Snap91 protein_coding Interval_56142 chr14 106765754 106768240 + 0 NA TTS (ENSMUSG00000077224.1) snoRNA-TTS (ENSMUSG00000077224.1) 967 ENSMUSG00000077224.1 ENSMUSG00000077224 ENSMUST00000104036 Gm23437 snoRNA Interval_161196 chr8 118485150 118485659 + 0 NA intron (ENSMUSG00000031841.19, intron 2 of 8) protein_coding-intron (ENSMUSG00000031841.19, intron 1 of 13) -58805 ENSMUSG00000064801.1 ENSMUSG00000064801 ENSMUST00000082867 Gm24035 snRNA Interval_90179 chr2 28765400 28765600 + 0 NA intron (ENSMUSG00000026807.8, intron 11 of 12) protein_coding-intron (ENSMUSG00000026807.8, intron 11 of 12) 23250 ENSMUSG00000026807.8 ENSMUSG00000026807 ENSMUST00000137588 Ak8 protein_coding Interval_128247 chr5 112024374 112025443 + 0 NA Intergenic Intergenic -80673 ENSMUSG00000106060.1 ENSMUSG00000106060 ENSMUST00000197648 Gm42488 lincRNA Interval_428 chr1 5165372 5166011 + 0 NA Intergenic Intergenic 82559 ENSMUSG00000033793.12 ENSMUSG00000033793 ENSMUST00000192142 Atp6v1h protein_coding Interval_121724 chr5 5748950 5750187 + 0 NA promoter-TSS (ENSMUSG00000015652.9) protein_coding-promoter-TSS (ENSMUSG00000015652.9) -9167 ENSMUSG00000015652.9 ENSMUSG00000015652 ENSMUST00000169542 Steap1 protein_coding Interval_2023 chr1 35951584 35952208 + 0 NA Intergenic Intergenic -7023 ENSMUSG00000103096.1 ENSMUSG00000103096 ENSMUST00000191763 Gm8022 processed_pseudogene Interval_110023 chr3 152563778 152564797 + 0 NA intron (ENSMUSG00000039058.11, intron 6 of 13) protein_coding-intron (ENSMUSG00000039058.11, intron 6 of 13) -37535 ENSMUSG00000039058.11 ENSMUSG00000039058 ENSMUST00000198552 Ak5 protein_coding Interval_40196 chr12 102484942 102485200 + 0 NA intron (ENSMUSG00000021192.16, intron 1 of 5) protein_coding-intron (ENSMUSG00000021192.16, intron 7 of 12) 614 ENSMUSG00000021192.16 ENSMUSG00000021192 ENSMUST00000222744 Golga5 protein_coding Interval_30457 chr11 94491014 94491948 + 0 NA intron (ENSMUSG00000010080.15, intron 9 of 9) protein_coding-intron (ENSMUSG00000010080.15, intron 7 of 7) -7069 ENSMUSG00000020867.13 ENSMUSG00000020867 ENSMUST00000125310 Spata20 protein_coding Interval_103638 chr3 51339785 51342063 + 0 NA promoter-TSS (ENSMUSG00000037174.18) protein_coding-promoter-TSS (ENSMUSG00000037174.18) -29298 ENSMUSG00000103654.1 ENSMUSG00000103654 ENSMUST00000191618 Gm37203 processed_pseudogene Interval_42963 chr13 21933866 21934491 + 0 NA Intergenic Intergenic -9162 ENSMUSG00000105839.1 ENSMUSG00000105839 ENSMUST00000196554 Gm44456 miRNA Interval_56104 chr14 105815461 105815801 + 0 NA Intergenic Intergenic -1277 ENSMUSG00000092664.1 ENSMUSG00000092664 ENSMUST00000174923 Gm22406 miRNA Interval_154668 chr8 22466504 22466775 + 0 NA intron (ENSMUSG00000031534.15, intron 4 of 4) protein_coding-intron (ENSMUSG00000031534.15, intron 3 of 3) 10216 ENSMUSG00000031534.15 ENSMUSG00000031534 ENSMUST00000033935 Smim19 protein_coding Interval_25557 chr11 49747924 49748230 + 0 NA Intergenic Intergenic -23756 ENSMUSG00000092894.1 ENSMUSG00000092894 ENSMUST00000175153 Gm23813 miRNA Interval_148961 chr7 90426207 90427495 + 0 NA exon (ENSMUSG00000044362.8, exon 1 of 1) protein_coding-exon (ENSMUSG00000044362.8, exon 1 of 1) 274 ENSMUSG00000044362.8 ENSMUSG00000044362 ENSMUST00000061391 Ccdc89 protein_coding Interval_74341 chr17 49161897 49162343 + 0 NA Intergenic Intergenic 3638 ENSMUSG00000117115.1 ENSMUSG00000117115 ENSMUST00000233339 Gm9586 processed_pseudogene Interval_23052 chr11 19415656 19416614 + 0 NA Intergenic Intergenic 32450 ENSMUSG00000082737.3 ENSMUSG00000082737 ENSMUST00000120961 Gm12026 processed_pseudogene Interval_81077 chr18 53681789 53682102 + 0 NA exon (ENSMUSG00000048799.8, exon 21 of 21) protein_coding-exon (ENSMUSG00000048799.8, exon 21 of 21) 42839 ENSMUSG00000118362.1 ENSMUSG00000118362 ENSMUST00000235670 Gm19466 lincRNA Interval_145307 chr7 31660815 31661695 + 0 NA Intergenic Intergenic 8860 ENSMUSG00000101545.1 ENSMUSG00000101545 ENSMUST00000178571 Gm4373 processed_pseudogene Interval_125560 chr5 71113606 71113845 + 0 NA Intergenic Intergenic -18525 ENSMUSG00000000560.9 ENSMUSG00000000560 ENSMUST00000199012 Gabra2 protein_coding Interval_130771 chr5 130286534 130287703 + 0 NA intron (ENSMUSG00000056310.14, intron 9 of 15) protein_coding-intron (ENSMUSG00000056310.14, intron 9 of 15) 31499 ENSMUSG00000056310.14 ENSMUSG00000056310 ENSMUST00000147619 Tyw1 protein_coding Interval_162716 chr9 7976764 7978764 + 0 NA TTS (ENSMUSG00000092185.1) processed_transcript-TTS (ENSMUSG00000092185.1) 11926 ENSMUSG00000092185.1 ENSMUSG00000092185 ENSMUST00000174760 Gm20416 processed_transcript Interval_7594 chr1 132396847 132399042 + 0 NA Intergenic Intergenic 16815 ENSMUSG00000090079.1 ENSMUSG00000090079 ENSMUST00000159257 Gm15849 antisense Interval_94713 chr2 93630172 93630364 + 0 NA Intergenic Intergenic -12120 ENSMUSG00000040310.12 ENSMUSG00000040310 ENSMUST00000111254 Alx4 protein_coding Interval_85543 chr19 28299151 28299578 + 0 NA intron (ENSMUSG00000052942.13, intron 7 of 10) protein_coding-intron (ENSMUSG00000052942.13, intron 6 of 9) 1061 ENSMUSG00000052942.13 ENSMUSG00000052942 ENSMUST00000161328 Glis3 protein_coding Interval_147777 chr7 73506928 73507715 + 0 NA TTS (ENSMUSG00000078671.11) protein_coding-TTS (ENSMUSG00000078671.11) -8073 ENSMUSG00000108319.1 ENSMUSG00000108319 ENSMUST00000205458 Gm44552 TEC Interval_139620 chr6 103483952 103484804 + 0 NA Intergenic Intergenic -41874 ENSMUSG00000107804.1 ENSMUSG00000107804 ENSMUST00000203379 Gm44439 TEC Interval_36239 chr12 40164476 40164896 + 0 NA Intergenic Intergenic -30503 ENSMUSG00000002565.16 ENSMUSG00000002565 ENSMUST00000002640 Scin protein_coding Interval_100504 chr2 169724156 169724387 + 0 NA intron (ENSMUSG00000047907.11, intron 1 of 2) protein_coding-intron (ENSMUSG00000047907.11, intron 1 of 1) -95953 ENSMUSG00000103662.1 ENSMUSG00000103662 ENSMUST00000191912 Gm34294 TEC Interval_115881 chr4 105603436 105604620 + 0 NA Intergenic Intergenic 25688 ENSMUSG00000082061.1 ENSMUSG00000082061 ENSMUST00000121621 Gm12726 processed_pseudogene Interval_37671 chr12 70997139 70998025 + 0 NA intron (ENSMUSG00000085622.9, intron 3 of 3) processed_transcript-intron (ENSMUSG00000085622.9, intron 3 of 3) 18013 ENSMUSG00000085622.9 ENSMUSG00000085622 ENSMUST00000222159 3110056K07Rik processed_transcript Interval_109577 chr3 144588623 144589402 + 0 NA intron (ENSMUSG00000037072.15, intron 1 of 2) protein_coding-intron (ENSMUSG00000037072.15, intron 2 of 4) -2060 ENSMUSG00000064960.1 ENSMUSG00000064960 ENSMUST00000083026 Gm24406 snoRNA Interval_75883 chr17 72638086 72639637 + 0 NA Intergenic Intergenic -34554 ENSMUSG00000055471.7 ENSMUSG00000055471 ENSMUST00000232804 Alk protein_coding Interval_150650 chr7 113103987 113104524 + 0 NA intron (ENSMUSG00000110009.1, intron 3 of 5) lincRNA-intron (ENSMUSG00000110009.1, intron 3 of 4) -15443 ENSMUSG00000088671.1 ENSMUSG00000088671 ENSMUST00000158046 Gm23662 rRNA Interval_93104 chr2 70226690 70227352 + 0 NA intron (ENSMUSG00000042064.13, intron 9 of 33) protein_coding-intron (ENSMUSG00000042064.13, intron 10 of 34) 143947 ENSMUSG00000042064.13 ENSMUSG00000042064 ENSMUST00000112241 Myo3b protein_coding Interval_171091 chr9 114498375 114498745 + 0 NA intron (ENSMUSG00000047898.7, intron 2 of 2) protein_coding-intron (ENSMUSG00000047898.7, intron 2 of 2) 6356 ENSMUSG00000047898.7 ENSMUSG00000047898 ENSMUST00000215959 Ccr4 protein_coding Interval_42322 chr13 12087698 12087899 + 0 NA intron (ENSMUSG00000021313.16, intron 1 of 2) protein_coding-intron (ENSMUSG00000021313.16, intron 1 of 104) -35743 ENSMUSG00000112947.1 ENSMUSG00000112947 ENSMUST00000220599 Gm47493 TEC Interval_16108 chr10 60778568 60780350 + 0 NA intron (ENSMUSG00000020099.8, intron 4 of 15) protein_coding-intron (ENSMUSG00000020099.8, intron 4 of 16) -26676 ENSMUSG00000020100.15 ENSMUSG00000020100 ENSMUST00000144989 Slc29a3 protein_coding Interval_41894 chr13 3978951 3979265 + 0 NA Intergenic Intergenic -21866 ENSMUSG00000093010.1 ENSMUSG00000093010 ENSMUST00000175269 Gm22460 miRNA Interval_24617 chr11 35311539 35311923 + 0 NA intron (ENSMUSG00000056427.10, intron 2 of 3) protein_coding-intron (ENSMUSG00000056427.10, intron 4 of 35) 11939 ENSMUSG00000082309.3 ENSMUSG00000082309 ENSMUST00000120348 Gm12123 processed_pseudogene Interval_144588 chr7 26605530 26605831 + 0 NA Intergenic Intergenic 12784 ENSMUSG00000091924.2 ENSMUSG00000091924 ENSMUST00000171039 Vmn1r185 protein_coding Interval_97625 chr2 140922610 140923511 + 0 NA intron (ENSMUSG00000068205.14, intron 4 of 16) protein_coding-intron (ENSMUSG00000068205.14, intron 4 of 17) 33189 ENSMUSG00000081731.1 ENSMUSG00000081731 ENSMUST00000121776 Calr-ps processed_pseudogene Interval_84359 chr19 10362307 10363172 + 0 NA Intergenic Intergenic -26744 ENSMUSG00000024743.16 ENSMUSG00000024743 ENSMUST00000235717 Syt7 protein_coding Interval_136363 chr6 53798793 53799260 + 0 NA Intergenic Intergenic -19717 ENSMUSG00000108175.1 ENSMUSG00000108175 ENSMUST00000204648 Gm16499 antisense Interval_138360 chr6 87589943 87591218 + 0 NA exon (ENSMUSG00000049409.9, exon 1 of 3) protein_coding-exon (ENSMUSG00000049409.9, exon 1 of 3) 163 ENSMUSG00000049409.9 ENSMUSG00000049409 ENSMUST00000203636 Prokr1 protein_coding Interval_114806 chr4 85404414 85405444 + 0 NA intron (ENSMUSG00000028488.15, intron 7 of 7) protein_coding-intron (ENSMUSG00000028488.15, intron 7 of 7) 28588 ENSMUSG00000028488.15 ENSMUSG00000028488 ENSMUST00000133109 Sh3gl2 protein_coding Interval_6152 chr1 98110386 98110585 + 0 NA Intergenic Intergenic -20971 ENSMUSG00000100182.6 ENSMUSG00000100182 ENSMUST00000186473 1810006J02Rik lincRNA Interval_155549 chr8 34280491 34281886 + 0 NA Intergenic Intergenic 14788 ENSMUSG00000080434.1 ENSMUSG00000080434 ENSMUST00000116784 Gm23177 miRNA Interval_166312 chr9 58246970 58247581 + 0 NA exon (ENSMUSG00000036986.16, exon 2 of 9) protein_coding-exon (ENSMUSG00000036986.16, exon 2 of 9) -5913 ENSMUSG00000032333.6 ENSMUSG00000032333 ENSMUST00000216864 Stoml1 protein_coding Interval_5635 chr1 90459169 90460838 + 0 NA Intergenic Intergenic -5502 ENSMUSG00000101997.1 ENSMUSG00000101997 ENSMUST00000187630 Gm28722 lincRNA Interval_168065 chr9 75807986 75808659 + 0 NA intron (ENSMUSG00000032179.7, intron 1 of 6) protein_coding-intron (ENSMUSG00000032179.7, intron 1 of 6) -19700 ENSMUSG00000032179.7 ENSMUSG00000032179 ENSMUST00000137213 Bmp5 protein_coding Interval_146220 chr7 44815319 44816879 + 0 NA promoter-TSS (ENSMUSG00000109511.1) protein_coding-promoter-TSS (ENSMUSG00000109511.1) 11 ENSMUSG00000109511.1 ENSMUSG00000109511 ENSMUST00000207085 Nup62 protein_coding Interval_144245 chr7 23856518 23856929 + 0 NA Intergenic Intergenic 9726 ENSMUSG00000057513.3 ENSMUSG00000057513 ENSMUST00000073967 Vmn1r177 protein_coding Interval_7921 chr1 134591524 134591980 + 0 NA intron (ENSMUSG00000042207.17, intron 4 of 11) protein_coding-intron (ENSMUSG00000042207.17, intron 4 of 26) -31048 ENSMUSG00000042207.17 ENSMUSG00000042207 ENSMUST00000191572 Kdm5b protein_coding Interval_61793 chr15 84189210 84190145 + 0 NA intron (ENSMUSG00000116227.1, intron 2 of 2) processed_transcript-intron (ENSMUSG00000116227.1, intron 2 of 2) 3663 ENSMUSG00000041653.5 ENSMUSG00000041653 ENSMUST00000230926 Pnpla3 protein_coding Interval_45405 chr13 54916424 54917132 + 0 NA Intergenic Intergenic 3543 ENSMUSG00000085896.2 ENSMUSG00000085896 ENSMUST00000154615 5330429C05Rik lincRNA Interval_125985 chr5 76565215 76565914 + 0 NA intron (ENSMUSG00000036435.13, intron 2 of 3) protein_coding-intron (ENSMUSG00000036435.13, intron 15 of 17) 12918 ENSMUSG00000036435.13 ENSMUSG00000036435 ENSMUST00000143736 Exoc1 protein_coding Interval_2394 chr1 38939088 38940040 + 0 NA intron (ENSMUSG00000067604.8, intron 1 of 7) protein_coding-intron (ENSMUSG00000067604.8, intron 1 of 9) 361 ENSMUSG00000067604.8 ENSMUSG00000067604 ENSMUST00000160214 Nms protein_coding Interval_143907 chr7 17066397 17066627 + 0 NA Intergenic Intergenic -4128 ENSMUSG00000004328.15 ENSMUSG00000004328 ENSMUST00000153833 Hif3a protein_coding Interval_47360 chr13 81827285 81828271 + 0 NA Intergenic Intergenic 43391 ENSMUSG00000021537.9 ENSMUSG00000021537 ENSMUST00000224168 Cetn3 protein_coding Interval_119146 chr4 135838705 135838958 + 0 NA Intergenic Intergenic -14847 ENSMUSG00000081672.1 ENSMUSG00000081672 ENSMUST00000120937 Gm13000 processed_pseudogene Interval_167400 chr9 68707449 68707850 + 0 NA intron (ENSMUSG00000032238.17, intron 1 of 5) protein_coding-intron (ENSMUSG00000032238.17, intron 1 of 10) 53758 ENSMUSG00000032238.17 ENSMUSG00000032238 ENSMUST00000113624 Rora protein_coding Interval_71259 chr17 21706847 21708081 + 0 NA promoter-TSS (ENSMUSG00000067928.6) protein_coding-promoter-TSS (ENSMUSG00000067928.6) -277 ENSMUSG00000067928.6 ENSMUSG00000067928 ENSMUST00000073312 Zfp760 protein_coding Interval_152565 chr7 134663160 134663537 + 0 NA Intergenic Intergenic 3013 ENSMUSG00000108702.1 ENSMUSG00000108702 ENSMUST00000205452 Gm9333 processed_pseudogene Interval_5293 chr1 87292841 87293270 + 0 NA intron (ENSMUSG00000026255.15, intron 2 of 4) protein_coding-intron (ENSMUSG00000026255.15, intron 2 of 3) -16171 ENSMUSG00000026255.15 ENSMUSG00000026255 ENSMUST00000150831 Efhd1 protein_coding Interval_10052 chr1 165373901 165374138 + 0 NA intron (ENSMUSG00000026571.12, intron 10 of 11) protein_coding-intron (ENSMUSG00000026571.12, intron 10 of 18) -5500 ENSMUSG00000104427.1 ENSMUSG00000104427 ENSMUST00000193181 Gm38368 TEC Interval_12489 chr1 194222764 194223638 + 0 NA promoter-TSS (ENSMUSG00000103692.1) lincRNA-promoter-TSS (ENSMUSG00000103692.1) -442 ENSMUSG00000103692.1 ENSMUSG00000103692 ENSMUST00000193395 4930503O07Rik lincRNA Interval_1730 chr1 33052819 33053072 + 0 NA Intergenic Intergenic -12185 ENSMUSG00000102917.1 ENSMUSG00000102917 ENSMUST00000195240 Gm37724 lincRNA Interval_146079 chr7 43699506 43699754 + 0 NA intron (ENSMUSG00000097178.7, intron 6 of 6) processed_transcript-intron (ENSMUSG00000097178.7, intron 6 of 6) 6986 ENSMUSG00000108734.1 ENSMUSG00000108734 ENSMUST00000205416 Gm44817 TEC Interval_146318 chr7 45316888 45318681 + 0 NA intron (ENSMUSG00000038260.10, intron 10 of 22) protein_coding-intron (ENSMUSG00000038260.10, intron 12 of 24) -7181 ENSMUSG00000046721.11 ENSMUSG00000046721 ENSMUST00000026901 Rpl14-ps1 processed_pseudogene Interval_14379 chr10 31913166 31913433 + 0 NA intron (ENSMUSG00000069670.8, intron 4 of 6) protein_coding-intron (ENSMUSG00000069670.8, intron 4 of 6) 45387 ENSMUSG00000112866.1 ENSMUSG00000112866 ENSMUST00000219333 Gm47704 TEC Interval_65940 chr16 30397390 30397900 + 0 NA intron (ENSMUSG00000022533.14, intron 2 of 4) protein_coding-intron (ENSMUSG00000022533.14, intron 2 of 4) -54943 ENSMUSG00000116960.1 ENSMUSG00000116960 ENSMUST00000231864 Gm49679 processed_pseudogene Interval_42584 chr13 15931124 15932293 + 0 NA promoter-TSS (ENSMUSG00000114057.1) lincRNA-promoter-TSS (ENSMUSG00000114057.1) 26 ENSMUSG00000114057.1 ENSMUSG00000114057 ENSMUST00000220668 Gm31450 lincRNA Interval_93105 chr2 70259565 70259841 + 0 NA intron (ENSMUSG00000042064.13, intron 22 of 33) protein_coding-intron (ENSMUSG00000042064.13, intron 23 of 34) 176629 ENSMUSG00000042064.13 ENSMUSG00000042064 ENSMUST00000112241 Myo3b protein_coding Interval_19808 chr10 109475971 109476510 + 0 NA Intergenic Intergenic -89753 ENSMUSG00000112253.1 ENSMUSG00000112253 ENSMUST00000219849 Gm47329 processed_pseudogene Interval_51884 chr14 33333746 33334295 + 0 NA intron (ENSMUSG00000063506.14, intron 1 of 5) protein_coding-intron (ENSMUSG00000063506.14, intron 1 of 5) 36123 ENSMUSG00000087639.1 ENSMUSG00000087639 ENSMUST00000137359 Gm15512 antisense Interval_26320 chr11 56144641 56144852 + 0 NA Intergenic Intergenic -103736 ENSMUSG00000037393.2 ENSMUSG00000037393 ENSMUST00000037682 Nmur2 protein_coding Interval_113365 chr4 53849921 53850341 + 0 NA intron (ENSMUSG00000028420.13, intron 2 of 3) protein_coding-intron (ENSMUSG00000028420.13, intron 3 of 5) -10521 ENSMUSG00000065887.1 ENSMUSG00000065887 ENSMUST00000083953 n-R5s185 rRNA Interval_36616 chr12 51503889 51506371 + 0 NA Intergenic Intergenic -12196 ENSMUSG00000111959.1 ENSMUSG00000111959 ENSMUST00000220340 Gm18503 processed_pseudogene Interval_6941 chr1 121096422 121097167 + 0 NA intron (ENSMUSG00000097881.7, intron 1 of 2) lincRNA-intron (ENSMUSG00000097881.7, intron 1 of 4) 9323 ENSMUSG00000097881.7 ENSMUSG00000097881 ENSMUST00000181183 Celrr lincRNA Interval_54097 chr14 65266240 65266931 + 0 NA promoter-TSS (ENSMUSG00000034532.9) protein_coding-promoter-TSS (ENSMUSG00000034532.9) -152 ENSMUSG00000034532.9 ENSMUSG00000034532 ENSMUST00000226005 Fbxo16 protein_coding Interval_102217 chr3 19539137 19539495 + 0 NA intron (ENSMUSG00000027606.12, intron 1 of 4) protein_coding-intron (ENSMUSG00000027606.12, intron 1 of 4) 8069 ENSMUSG00000027606.12 ENSMUSG00000027606 ENSMUST00000165693 Dnajc5b protein_coding Interval_61152 chr15 79516091 79516878 + 0 NA promoter-TSS (ENSMUSG00000010830.8) protein_coding-promoter-TSS (ENSMUSG00000010830.8) 73 ENSMUSG00000010830.8 ENSMUSG00000010830 ENSMUST00000010974 Kdelr3 protein_coding Interval_41467 chr12 114666141 114666414 + 0 NA promoter-TSS (ENSMUSG00000095554.2) IG_V_gene-promoter-TSS (ENSMUSG00000095554.2) -112 ENSMUSG00000095554.2 ENSMUSG00000095554 ENSMUST00000103501 Ighv1-16 IG_V_gene Interval_111125 chr4 12430765 12431688 + 0 NA Intergenic Intergenic 159827 ENSMUSG00000085909.1 ENSMUSG00000085909 ENSMUST00000155156 Gm11846 lincRNA Interval_163309 chr9 20756959 20757586 + 0 NA Intergenic Intergenic -30335 ENSMUSG00000032172.8 ENSMUSG00000032172 ENSMUST00000215039 Olfm2 protein_coding Interval_29187 chr11 81229144 81229907 + 0 NA intron (ENSMUSG00000020704.13, intron 1 of 9) protein_coding-intron (ENSMUSG00000020704.13, intron 1 of 9) -155488 ENSMUSG00000086971.1 ENSMUSG00000086971 ENSMUST00000141593 4930527B05Rik antisense Interval_146643 chr7 49047574 49048107 + 0 NA intron (ENSMUSG00000052512.17, intron 2 of 39) protein_coding-intron (ENSMUSG00000052512.17, intron 2 of 39) 14741 ENSMUSG00000109068.1 ENSMUSG00000109068 ENSMUST00000207469 Gm45207 processed_pseudogene Interval_62350 chr15 90841254 90841442 + 0 NA Intergenic Intergenic -41267 ENSMUSG00000067869.4 ENSMUSG00000067869 ENSMUST00000117942 Tcea1-ps1 processed_pseudogene Interval_114296 chr4 71381552 71381967 + 0 NA Intergenic Intergenic -10563 ENSMUSG00000083914.3 ENSMUSG00000083914 ENSMUST00000120838 Rps18-ps1 processed_pseudogene Interval_65809 chr16 29029421 29029683 + 0 NA Intergenic Intergenic -78197 ENSMUSG00000116861.1 ENSMUSG00000116861 ENSMUST00000232466 Gm8253 processed_pseudogene Interval_10754 chr1 174284850 174285226 + 0 NA Intergenic Intergenic -32977 ENSMUSG00000050788.5 ENSMUSG00000050788 ENSMUST00000061990 Olfr419 protein_coding Interval_55003 chr14 76800406 76800623 + 0 NA Intergenic Intergenic 19687 ENSMUSG00000115817.1 ENSMUSG00000115817 ENSMUST00000226490 Gm30246 lincRNA Interval_8451 chr1 139488007 139488796 + 0 NA exon (ENSMUSG00000033952.14, exon 22 of 28) protein_coding-exon (ENSMUSG00000033952.14, exon 22 of 28) -27993 ENSMUSG00000026368.6 ENSMUSG00000026368 ENSMUST00000141842 F13b protein_coding Interval_124898 chr5 59865233 59865501 + 0 NA Intergenic Intergenic 87455 ENSMUSG00000104889.1 ENSMUSG00000104889 ENSMUST00000196579 Gm43043 processed_pseudogene Interval_130565 chr5 128878866 128879538 + 0 NA intron (ENSMUSG00000029420.14, intron 1 of 20) protein_coding-intron (ENSMUSG00000029420.14, intron 1 of 21) -103652 ENSMUSG00000106522.1 ENSMUSG00000106522 ENSMUST00000199333 Gm42871 sense_intronic Interval_90436 chr2 30440825 30442372 + 0 NA promoter-TSS (ENSMUSG00000039515.11) protein_coding-promoter-TSS (ENSMUSG00000039515.11) 25296 ENSMUSG00000039515.11 ENSMUSG00000039515 ENSMUST00000135105 Ptpa protein_coding Interval_101109 chr2 178028682 178030591 + 0 NA intron (ENSMUSG00000074519.11, intron 1 of 3) protein_coding-intron (ENSMUSG00000074519.11, intron 1 of 2) 6257 ENSMUSG00000074519.11 ENSMUSG00000074519 ENSMUST00000108926 Zfp971 protein_coding Interval_147138 chr7 63757680 63759148 + 0 NA TTS (ENSMUSG00000033510.14) protein_coding-TTS (ENSMUSG00000033510.14) -7460 ENSMUSG00000108421.1 ENSMUSG00000108421 ENSMUST00000206886 Gm44718 lincRNA Interval_59220 chr15 48978989 48979732 + 0 NA Intergenic Intergenic -72624 ENSMUSG00000089314.1 ENSMUSG00000089314 ENSMUST00000158689 Gm23185 snRNA Interval_78090 chr18 7890893 7891175 + 0 NA intron (ENSMUSG00000024283.15, intron 3 of 13) protein_coding-intron (ENSMUSG00000024283.15, intron 3 of 13) 21533 ENSMUSG00000024283.15 ENSMUSG00000024283 ENSMUST00000167542 Wac protein_coding Interval_83232 chr18 82902150 82902807 + 0 NA intron (ENSMUSG00000117762.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000117762.1, intron 1 of 2) 400 ENSMUSG00000117762.1 ENSMUSG00000117762 ENSMUST00000236957 Gm30889 lincRNA Interval_150712 chr7 113668255 113668536 + 0 NA Intergenic Intergenic -1379 ENSMUSG00000089467.1 ENSMUSG00000089467 ENSMUST00000158842 Gm23700 miRNA Interval_54700 chr14 73470668 73471089 + 0 NA Intergenic Intergenic -22215 ENSMUSG00000115530.1 ENSMUSG00000115530 ENSMUST00000226353 Gm4266 processed_pseudogene Interval_7384 chr1 130745485 130746208 + 0 NA Intergenic Intergenic -4519 ENSMUSG00000099556.1 ENSMUSG00000099556 ENSMUST00000188068 Gm28857 antisense Interval_136326 chr6 53067497 53069024 + 0 NA intron (ENSMUSG00000063568.11, intron 1 of 4) protein_coding-intron (ENSMUSG00000063568.11, intron 1 of 4) 22376 ENSMUSG00000080759.1 ENSMUSG00000080759 ENSMUST00000119487 Gm15573 processed_pseudogene Interval_151772 chr7 126556262 126556772 + 0 NA intron (ENSMUSG00000030738.11, intron 14 of 20) protein_coding-intron (ENSMUSG00000030738.11, intron 14 of 20) 7463 ENSMUSG00000084453.1 ENSMUSG00000084453 ENSMUST00000122504 Gm24596 snRNA Interval_47163 chr13 76810535 76810874 + 0 NA intron (ENSMUSG00000021596.16, intron 6 of 10) protein_coding-intron (ENSMUSG00000021596.16, intron 10 of 20) -14503 ENSMUSG00000021596.16 ENSMUSG00000021596 ENSMUST00000149028 Mctp1 protein_coding Interval_117127 chr4 119806667 119806864 + 0 NA intron (ENSMUSG00000028634.17, intron 2 of 3) protein_coding-intron (ENSMUSG00000028634.17, intron 2 of 3) -147984 ENSMUSG00000032978.14 ENSMUSG00000032978 ENSMUST00000044426 Guca2b protein_coding Interval_166997 chr9 64388927 64390546 + 0 NA intron (ENSMUSG00000036466.17, intron 1 of 24) protein_coding-intron (ENSMUSG00000036466.17, intron 1 of 24) 4110 ENSMUSG00000036466.17 ENSMUSG00000036466 ENSMUST00000153934 Megf11 protein_coding Interval_71277 chr17 21835172 21835471 + 0 NA intron (ENSMUSG00000069743.5, intron 2 of 4) protein_coding-intron (ENSMUSG00000069743.5, intron 2 of 4) 10451 ENSMUSG00000069743.5 ENSMUSG00000069743 ENSMUST00000232918 Zfp820 protein_coding Interval_1683 chr1 31085651 31085891 + 0 NA intron (ENSMUSG00000086727.8, intron 3 of 5) protein_coding-intron (ENSMUSG00000086727.8, intron 3 of 5) 37091 ENSMUSG00000098529.1 ENSMUSG00000098529 ENSMUST00000184868 Gm27362 rRNA Interval_74316 chr17 48816761 48817960 + 0 NA Intergenic Intergenic -78614 ENSMUSG00000110276.1 ENSMUSG00000110276 ENSMUST00000209681 Gm45330 lincRNA Interval_151837 chr7 127016055 127017536 + 0 NA promoter-TSS (ENSMUSG00000092534.8) protein_coding-promoter-TSS (ENSMUSG00000092534.8) -311 ENSMUSG00000092534.8 ENSMUSG00000092534 ENSMUST00000172958 Pagr1b protein_coding Interval_938 chr1 13308702 13309187 + 0 NA intron (ENSMUSG00000005886.14, intron 1 of 12) protein_coding-intron (ENSMUSG00000005886.14, intron 1 of 22) -10037 ENSMUSG00000104170.1 ENSMUSG00000104170 ENSMUST00000194357 Gm37702 TEC Interval_82163 chr18 68212169 68212812 + 0 NA intron (ENSMUSG00000024544.9, intron 3 of 5) protein_coding-intron (ENSMUSG00000024544.9, intron 3 of 5) -15577 ENSMUSG00000024544.9 ENSMUSG00000024544 ENSMUST00000236987 Ldlrad4 protein_coding Interval_41459 chr12 114391182 114392087 + 0 NA TTS (ENSMUSG00000076677.1) IG_V_gene-TTS (ENSMUSG00000076677.1) 535 ENSMUSG00000076677.1 ENSMUSG00000076677 ENSMUST00000103486 Ighv6-3 IG_V_gene Interval_53080 chr14 54297137 54297384 + 0 NA promoter-TSS (ENSMUSG00000105703.2) processed_transcript-promoter-TSS (ENSMUSG00000105703.2) 196 ENSMUSG00000105703.2 ENSMUSG00000105703 ENSMUST00000225083 Gm43305 processed_transcript Interval_118434 chr4 131486675 131487214 + 0 NA promoter-TSS (ENSMUSG00000078531.3) lincRNA-promoter-TSS (ENSMUSG00000078531.3) -253 ENSMUSG00000078531.3 ENSMUSG00000078531 ENSMUST00000149942 Gm831 lincRNA Interval_138569 chr6 89396838 89397388 + 0 NA intron (ENSMUSG00000030086.16, intron 5 of 6) protein_coding-intron (ENSMUSG00000030086.16, intron 6 of 7) 51973 ENSMUSG00000107570.1 ENSMUSG00000107570 ENSMUST00000204568 Gm44207 TEC Interval_6160 chr1 98227243 98227539 + 0 NA Intergenic Intergenic -36132 ENSMUSG00000097608.1 ENSMUSG00000097608 ENSMUST00000180540 Gm7952 processed_pseudogene Interval_133884 chr6 14207382 14208188 + 0 NA Intergenic Intergenic 94469 ENSMUSG00000088975.1 ENSMUSG00000088975 ENSMUST00000158350 Gm23760 snoRNA Interval_48844 chr13 103985001 103985842 + 0 NA Intergenic Intergenic -7091 ENSMUSG00000114637.1 ENSMUSG00000114637 ENSMUST00000224348 Gm47851 lincRNA Interval_107422 chr3 107516878 107518359 + 0 NA promoter-TSS (ENSMUSG00000027894.14) protein_coding-promoter-TSS (ENSMUSG00000027894.14) 37455 ENSMUSG00000055891.7 ENSMUSG00000055891 ENSMUST00000052853 Ubl4b protein_coding Interval_147553 chr7 68245447 68246632 + 0 NA intron (ENSMUSG00000030553.3, intron 1 of 3) protein_coding-intron (ENSMUSG00000030553.3, intron 1 of 3) 18194 ENSMUSG00000030553.3 ENSMUSG00000030553 ENSMUST00000207874 Pgpep1l protein_coding Interval_10005 chr1 164904884 164905890 + 0 NA intron (ENSMUSG00000104117.5, intron 2 of 3) processed_transcript-intron (ENSMUSG00000104117.5, intron 2 of 3) -29034 ENSMUSG00000103320.1 ENSMUSG00000103320 ENSMUST00000193775 Gm37403 TEC Interval_60199 chr15 67601376 67601642 + 0 NA Intergenic Intergenic -272319 ENSMUSG00000115875.1 ENSMUSG00000115875 ENSMUST00000230402 Gm49408 processed_pseudogene Interval_151228 chr7 119868936 119869134 + 0 NA intron (ENSMUSG00000048787.13, intron 1 of 2) protein_coding-intron (ENSMUSG00000048787.13, intron 1 of 2) 25170 ENSMUSG00000030924.16 ENSMUSG00000030924 ENSMUST00000151248 Rexo5 protein_coding Interval_122098 chr5 16968414 16969491 + 0 NA Intergenic Intergenic -12084 ENSMUSG00000105706.1 ENSMUSG00000105706 ENSMUST00000197388 Gm42855 processed_pseudogene Interval_150672 chr7 113229990 113230256 + 0 NA intron (ENSMUSG00000055116.8, intron 1 of 20) protein_coding-intron (ENSMUSG00000055116.8, intron 1 of 19) -4500 ENSMUSG00000055116.8 ENSMUSG00000055116 ENSMUST00000211547 Arntl protein_coding Interval_137780 chr6 82388610 82388880 + 0 NA Intergenic Intergenic -13589 ENSMUSG00000030043.11 ENSMUSG00000030043 ENSMUST00000203775 Tacr1 protein_coding Interval_34295 chr12 3173234 3173894 + 0 NA intron (ENSMUSG00000110250.1, intron 1 of 12) unprocessed_pseudogene-intron (ENSMUSG00000110250.1, intron 1 of 12) 1690 ENSMUSG00000110250.1 ENSMUSG00000110250 ENSMUST00000210657 Gm9077 unprocessed_pseudogene Interval_161943 chr8 123957753 123958916 + 0 NA TTS (ENSMUSG00000110615.1) antisense-TTS (ENSMUSG00000110615.1) 8902 ENSMUSG00000110615.1 ENSMUSG00000110615 ENSMUST00000212250 Gm45890 antisense Interval_122799 chr5 25613828 25614208 + 0 NA Intergenic Intergenic -45791 ENSMUSG00000106144.1 ENSMUSG00000106144 ENSMUST00000181398 Gm43972 lincRNA Interval_115283 chr4 95278463 95278973 + 0 NA Intergenic Intergenic 85405 ENSMUSG00000084918.1 ENSMUSG00000084918 ENSMUST00000126143 Gm12708 lincRNA Interval_19585 chr10 103993334 103993830 + 0 NA Intergenic Intergenic 6589 ENSMUSG00000112281.1 ENSMUSG00000112281 ENSMUST00000218778 Gm47226 lincRNA Interval_111965 chr4 32863389 32864768 + 0 NA intron (ENSMUSG00000040183.13, intron 1 of 15) protein_coding-intron (ENSMUSG00000040183.13, intron 2 of 16) -3395 ENSMUSG00000040183.13 ENSMUSG00000040183 ENSMUST00000149650 Ankrd6 protein_coding Interval_112785 chr4 44983363 44983692 + 0 NA intron (ENSMUSG00000035637.14, intron 2 of 7) protein_coding-intron (ENSMUSG00000035637.14, intron 2 of 8) 2066 ENSMUSG00000035637.14 ENSMUSG00000035637 ENSMUST00000143589 Grhpr protein_coding Interval_166059 chr9 56160332 56161468 + 0 NA promoter-TSS (ENSMUSG00000032324.11) protein_coding-promoter-TSS (ENSMUSG00000032324.11) 4577 ENSMUSG00000032324.11 ENSMUSG00000032324 ENSMUST00000216320 Tspan3 protein_coding Interval_11504 chr1 182311260 182311547 + 0 NA Intergenic Intergenic 23413 ENSMUSG00000100147.2 ENSMUSG00000100147 ENSMUST00000185216 1700047M11Rik lincRNA Interval_142454 chr6 142463235 142463466 + 0 NA exon (ENSMUSG00000030244.7, exon 2 of 17) protein_coding-exon (ENSMUSG00000030244.7, exon 2 of 17) -39731 ENSMUSG00000030244.7 ENSMUSG00000030244 ENSMUST00000126939 Gys2 protein_coding Interval_55564 chr14 92410634 92411569 + 0 NA Intergenic Intergenic -42472 ENSMUSG00000077298.1 ENSMUSG00000077298 ENSMUST00000104110 Gm24127 snoRNA Interval_16754 chr10 67950416 67950970 + 0 NA Intergenic Intergenic 23015 ENSMUSG00000112899.1 ENSMUSG00000112899 ENSMUST00000219339 4930521O17Rik lincRNA Interval_145932 chr7 42447930 42448206 + 0 NA promoter-TSS (ENSMUSG00000030463.5) protein_coding-promoter-TSS (ENSMUSG00000030463.5) 35 ENSMUSG00000030463.5 ENSMUSG00000030463 ENSMUST00000206593 4933421I07Rik protein_coding Interval_43364 chr13 29737792 29738601 + 0 NA intron (ENSMUSG00000006191.17, intron 5 of 10) protein_coding-intron (ENSMUSG00000006191.17, intron 5 of 15) -202087 ENSMUSG00000086893.1 ENSMUSG00000086893 ENSMUST00000144277 Gm11365 antisense Interval_93602 chr2 74749401 74750486 + 0 NA TTS (ENSMUSG00000075277.5) bidirectional_promoter_lncRNA-TTS (ENSMUSG00000075277.5) -2741 ENSMUSG00000085015.1 ENSMUSG00000085015 ENSMUST00000143191 Gm14424 lincRNA Interval_127153 chr5 100663442 100664461 + 0 NA exon (ENSMUSG00000029319.8, exon 1 of 3) protein_coding-exon (ENSMUSG00000029319.8, exon 1 of 3) 468 ENSMUSG00000029319.8 ENSMUSG00000029319 ENSMUST00000127811 Coq2 protein_coding Interval_159231 chr8 91996876 91997687 + 0 NA promoter-TSS (ENSMUSG00000110274.1) lincRNA-promoter-TSS (ENSMUSG00000110274.1) -313 ENSMUSG00000110274.1 ENSMUSG00000110274 ENSMUST00000209303 Gm36843 lincRNA Interval_14408 chr10 33077680 33077892 + 0 NA Intergenic Intergenic -2768 ENSMUSG00000019787.9 ENSMUSG00000019787 ENSMUST00000219000 Trdn protein_coding Interval_61892 chr15 84987099 84988789 + 0 NA promoter-TSS (ENSMUSG00000036046.14) protein_coding-promoter-TSS (ENSMUSG00000036046.14) 607 ENSMUSG00000036046.14 ENSMUSG00000036046 ENSMUST00000170863 5031439G07Rik protein_coding Interval_69221 chr16 91447921 91449116 + 0 NA intron (ENSMUSG00000116987.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000116987.1, intron 1 of 1) -9903 ENSMUSG00000116782.1 ENSMUSG00000116782 ENSMUST00000231789 Gm46562 processed_pseudogene Interval_111999 chr4 33123156 33123761 + 0 NA Intergenic Intergenic -9063 ENSMUSG00000028280.9 ENSMUSG00000028280 ENSMUST00000029947 Gabrr1 protein_coding Interval_122147 chr5 18274717 18275684 + 0 NA intron (ENSMUSG00000057614.6, intron 5 of 7) protein_coding-intron (ENSMUSG00000057614.6, intron 5 of 7) -75148 ENSMUSG00000104540.1 ENSMUSG00000104540 ENSMUST00000198905 Gm3527 processed_pseudogene Interval_130569 chr5 128903387 128905698 + 0 NA intron (ENSMUSG00000029420.14, intron 1 of 3) protein_coding-intron (ENSMUSG00000029420.14, intron 1 of 21) 104004 ENSMUSG00000029428.13 ENSMUSG00000029428 ENSMUST00000199813 Stx2 protein_coding Interval_44838 chr13 48998307 48998985 + 0 NA Intergenic Intergenic -30629 ENSMUSG00000038014.7 ENSMUSG00000038014 ENSMUST00000060805 Fam120a protein_coding Interval_156225 chr8 46237928 46238199 + 0 NA Intergenic Intergenic 8269 ENSMUSG00000092897.1 ENSMUSG00000092897 ENSMUST00000175156 Gm23812 miRNA Interval_17738 chr10 79822505 79823358 + 0 NA intron (ENSMUSG00000035852.11, intron 1 of 1) protein_coding-intron (ENSMUSG00000035852.11, intron 1 of 4) -1756 ENSMUSG00000035852.11 ENSMUSG00000035852 ENSMUST00000218531 Misp protein_coding Interval_127319 chr5 102792583 102793998 + 0 NA intron (ENSMUSG00000057315.14, intron 1 of 7) protein_coding-intron (ENSMUSG00000057315.14, intron 2 of 8) -15759 ENSMUSG00000057315.14 ENSMUSG00000057315 ENSMUST00000070000 Arhgap24 protein_coding Interval_169808 chr9 101989410 101991530 + 0 NA TTS (ENSMUSG00000103026.1) TEC-TTS (ENSMUSG00000103026.1) 1210 ENSMUSG00000103026.1 ENSMUSG00000103026 ENSMUST00000191856 Gm31326 TEC Interval_65655 chr16 24852875 24854067 + 0 NA intron (ENSMUSG00000033306.15, intron 1 of 3) protein_coding-intron (ENSMUSG00000033306.15, intron 9 of 12) 8296 ENSMUSG00000033306.15 ENSMUSG00000033306 ENSMUST00000232546 Lpp protein_coding Interval_138779 chr6 91799190 91799754 + 0 NA intron (ENSMUSG00000030098.15, intron 1 of 23) protein_coding-intron (ENSMUSG00000030098.15, intron 1 of 22) -3212 ENSMUSG00000030098.15 ENSMUSG00000030098 ENSMUST00000205964 Grip2 protein_coding Interval_76105 chr17 75017057 75017983 + 0 NA intron (ENSMUSG00000001870.16, intron 2 of 34) protein_coding-intron (ENSMUSG00000001870.16, intron 2 of 33) 11952 ENSMUSG00000001870.16 ENSMUSG00000001870 ENSMUST00000135750 Ltbp1 protein_coding Interval_151527 chr7 123280637 123280885 + 0 NA intron (ENSMUSG00000030766.15, intron 19 of 19) protein_coding-intron (ENSMUSG00000030766.15, intron 18 of 18) 15572 ENSMUSG00000030769.15 ENSMUSG00000030769 ENSMUST00000206180 Slc5a11 protein_coding Interval_73876 chr17 45146987 45147339 + 0 NA promoter-TSS (ENSMUSG00000117044.1) lincRNA-promoter-TSS (ENSMUSG00000117044.1) -74 ENSMUSG00000117044.1 ENSMUSG00000117044 ENSMUST00000233532 Gm35097 lincRNA Interval_21126 chr10 126752665 126753616 + 0 NA Intergenic Intergenic -33746 ENSMUSG00000111961.1 ENSMUSG00000111961 ENSMUST00000217923 Gm47966 lincRNA Interval_96140 chr2 119992545 119994121 + 0 NA intron (ENSMUSG00000033902.12, intron 1 of 30) protein_coding-intron (ENSMUSG00000033902.12, intron 1 of 29) 20430 ENSMUSG00000033902.12 ENSMUSG00000033902 ENSMUST00000148161 Mapkbp1 protein_coding Interval_170026 chr9 103758837 103759452 + 0 NA intron (ENSMUSG00000042757.16, intron 1 of 3) protein_coding-intron (ENSMUSG00000042757.16, intron 1 of 1) 2685 ENSMUSG00000042757.16 ENSMUSG00000042757 ENSMUST00000186455 Tmem108 protein_coding Interval_55378 chr14 86297772 86298020 + 0 NA intron (ENSMUSG00000115777.1, intron 1 of 2) processed_transcript-intron (ENSMUSG00000115777.1, intron 1 of 2) 1838 ENSMUSG00000115777.1 ENSMUSG00000115777 ENSMUST00000228609 Gm32815 processed_transcript Interval_106719 chr3 99538611 99538911 + 0 NA Intergenic Intergenic 6301 ENSMUSG00000083938.2 ENSMUSG00000083938 ENSMUST00000118852 Gm12448 processed_pseudogene Interval_19925 chr10 111283214 111283488 + 0 NA intron (ENSMUSG00000020189.15, intron 14 of 16) protein_coding-intron (ENSMUSG00000020189.15, intron 16 of 22) -15328 ENSMUSG00000035759.4 ENSMUSG00000035759 ENSMUST00000040454 Bbs10 protein_coding Interval_35312 chr12 20425498 20427112 + 0 NA promoter-TSS (ENSMUSG00000116606.1) lincRNA-promoter-TSS (ENSMUSG00000116606.1) -608 ENSMUSG00000116606.1 ENSMUSG00000116606 ENSMUST00000232483 Gm10479 lincRNA Interval_134410 chr6 28423265 28424214 + 0 NA promoter-TSS (ENSMUSG00000020440.13) protein_coding-promoter-TSS (ENSMUSG00000020440.13) 30 ENSMUSG00000020440.13 ENSMUSG00000020440 ENSMUST00000202028 Arf5 protein_coding Interval_64684 chr16 14162896 14163678 + 0 NA promoter-TSS (ENSMUSG00000022678.16) protein_coding-promoter-TSS (ENSMUSG00000022678.16) 3661 ENSMUSG00000070074.1 ENSMUSG00000070074 ENSMUST00000093566 Mir484 miRNA Interval_102730 chr3 30646767 30648826 + 0 NA promoter-TSS (ENSMUSG00000027702.7) protein_coding-promoter-TSS (ENSMUSG00000027702.7) 73 ENSMUSG00000027702.7 ENSMUSG00000027702 ENSMUST00000029252 Lrrc34 protein_coding Interval_17109 chr10 71387494 71388225 + 0 NA intron (ENSMUSG00000060733.13, intron 1 of 2) protein_coding-intron (ENSMUSG00000060733.13, intron 1 of 2) 40023 ENSMUSG00000060733.13 ENSMUSG00000060733 ENSMUST00000145521 Ipmk protein_coding Interval_18234 chr10 84019140 84021809 + 0 NA Intergenic Intergenic -15614 ENSMUSG00000111699.1 ENSMUSG00000111699 ENSMUST00000215772 C230099D08Rik lincRNA Interval_38747 chr12 81816376 81817430 + 0 NA Intergenic Intergenic -10896 ENSMUSG00000113950.1 ENSMUSG00000113950 ENSMUST00000221799 Gm47080 lincRNA Interval_58720 chr15 37319320 37320797 + 0 NA intron (ENSMUSG00000022286.16, intron 1 of 8) protein_coding-intron (ENSMUSG00000022286.16, intron 8 of 15) 12751 ENSMUSG00000089811.2 ENSMUSG00000089811 ENSMUST00000159341 Gm16138 processed_pseudogene Interval_99741 chr2 164603630 164603860 + 0 NA intron (ENSMUSG00000070533.11, intron 4 of 6) protein_coding-intron (ENSMUSG00000070533.11, intron 4 of 7) 1809 ENSMUSG00000065797.1 ENSMUSG00000065797 ENSMUST00000083863 Gm25512 snRNA Interval_94444 chr2 91278506 91279581 + 0 NA intron (ENSMUSG00000040591.18, intron 8 of 8) protein_coding-intron (ENSMUSG00000040591.18, intron 8 of 8) 13709 ENSMUSG00000027255.14 ENSMUSG00000027255 ENSMUST00000127895 Arfgap2 protein_coding Interval_23700 chr11 24739917 24740170 + 0 NA Intergenic Intergenic -9321 ENSMUSG00000073103.2 ENSMUSG00000073103 ENSMUST00000101450 Gm10466 lincRNA Interval_23845 chr11 27071488 27072542 + 0 NA Intergenic Intergenic -13111 ENSMUSG00000084588.1 ENSMUSG00000084588 ENSMUST00000122639 n-R5s68 rRNA Interval_167056 chr9 64935864 64937018 + 0 NA intron (ENSMUSG00000034452.7, intron 3 of 9) protein_coding-intron (ENSMUSG00000034452.7, intron 3 of 9) 15166 ENSMUSG00000034452.7 ENSMUSG00000034452 ENSMUST00000037798 Slc24a1 protein_coding Interval_4031 chr1 66733218 66733487 + 0 NA intron (ENSMUSG00000026004.15, intron 7 of 13) protein_coding-intron (ENSMUSG00000026004.15, intron 8 of 13) 32445 ENSMUSG00000026005.15 ENSMUSG00000026005 ENSMUST00000190404 Rpe protein_coding Interval_28636 chr11 77476227 77476395 + 0 NA promoter-TSS (ENSMUSG00000037907.16) protein_coding-promoter-TSS (ENSMUSG00000037907.16) 125 ENSMUSG00000037907.16 ENSMUSG00000037907 ENSMUST00000127291 Ankrd13b protein_coding Interval_77214 chr17 87405706 87406952 + 0 NA intron (ENSMUSG00000036557.8, intron 3 of 4) protein_coding-intron (ENSMUSG00000036557.8, intron 5 of 6) 21306 ENSMUSG00000036557.8 ENSMUSG00000036557 ENSMUST00000189487 Stpg4 protein_coding Interval_13272 chr10 13918342 13918704 + 0 NA Intergenic Intergenic 10441 ENSMUSG00000112494.1 ENSMUSG00000112494 ENSMUST00000220438 4930444K16Rik TEC Interval_87333 chr19 47780679 47781568 + 0 NA intron (ENSMUSG00000044948.17, intron 16 of 37) protein_coding-intron (ENSMUSG00000044948.17, intron 16 of 37) -17543 ENSMUSG00000044948.17 ENSMUSG00000044948 ENSMUST00000159204 Cfap43 protein_coding Interval_88205 chr19 60650961 60651826 + 0 NA Intergenic Intergenic 40106 ENSMUSG00000117790.1 ENSMUSG00000117790 ENSMUST00000236155 Gm46652 lincRNA Interval_120277 chr4 145122644 145123362 + 0 NA intron (ENSMUSG00000020220.16, intron 12 of 51) protein_coding-intron (ENSMUSG00000020220.16, intron 29 of 67) 32483 ENSMUSG00000020220.16 ENSMUSG00000020220 ENSMUST00000132700 Vps13d protein_coding Interval_24461 chr11 33440112 33440481 + 0 NA intron (ENSMUSG00000040594.19, intron 14 of 20) protein_coding-intron (ENSMUSG00000040594.19, intron 14 of 27) 1847 ENSMUSG00000083471.1 ENSMUSG00000083471 ENSMUST00000119766 Gm12118 processed_pseudogene Interval_12109 chr1 189792084 189793256 + 0 NA intron (ENSMUSG00000026604.17, intron 2 of 9) protein_coding-intron (ENSMUSG00000026604.17, intron 1 of 17) -34560 ENSMUSG00000102248.1 ENSMUSG00000102248 ENSMUST00000192214 Gm30280 processed_pseudogene Interval_160990 chr8 116702254 116703359 + 0 NA intron (ENSMUSG00000031758.10, intron 1 of 6) protein_coding-intron (ENSMUSG00000031758.10, intron 1 of 6) 30185 ENSMUSG00000031758.10 ENSMUSG00000031758 ENSMUST00000109102 Cdyl2 protein_coding Interval_104007 chr3 57150329 57151574 + 0 NA Intergenic Intergenic -14120 ENSMUSG00000097366.1 ENSMUSG00000097366 ENSMUST00000181591 Gm8177 processed_pseudogene Interval_48516 chr13 99641455 99642604 + 0 NA promoter-TSS (ENSMUSG00000103545.1) TEC-promoter-TSS (ENSMUSG00000103545.1) 55 ENSMUSG00000103545.1 ENSMUSG00000103545 ENSMUST00000193492 1700012J22Rik TEC Interval_133227 chr5 150702897 150703266 + 0 NA intron (ENSMUSG00000034021.15, intron 1 of 34) protein_coding-intron (ENSMUSG00000034021.15, intron 1 of 34) -4963 ENSMUSG00000084717.1 ENSMUSG00000084717 ENSMUST00000122768 Gm24630 snRNA Interval_29648 chr11 85811248 85811471 + 0 NA intron (ENSMUSG00000087013.7, intron 1 of 4) protein_coding-intron (ENSMUSG00000059439.15, intron 24 of 24) 20850 ENSMUSG00000087013.7 ENSMUSG00000087013 ENSMUST00000128213 2610027K06Rik processed_transcript Interval_86402 chr19 40253405 40254405 + 0 NA intron (ENSMUSG00000055044.12, intron 1 of 2) protein_coding-intron (ENSMUSG00000055044.12, intron 1 of 6) -23100 ENSMUSG00000055044.12 ENSMUSG00000055044 ENSMUST00000182636 Pdlim1 protein_coding Interval_165291 chr9 46055836 46056592 + 0 NA intron (ENSMUSG00000034135.15, intron 1 of 24) protein_coding-intron (ENSMUSG00000034135.15, intron 1 of 22) -66916 ENSMUSG00000034135.15 ENSMUSG00000034135 ENSMUST00000138338 Sik3 protein_coding Interval_126746 chr5 92488618 92488978 + 0 NA intron (ENSMUSG00000029426.8, intron 1 of 11) protein_coding-intron (ENSMUSG00000029426.8, intron 1 of 11) 18035 ENSMUSG00000029426.8 ENSMUSG00000029426 ENSMUST00000201253 Scarb2 protein_coding Interval_106930 chr3 102020316 102020963 + 0 NA Intergenic Intergenic 10484 ENSMUSG00000048540.8 ENSMUSG00000048540 ENSMUST00000198675 Nhlh2 protein_coding Interval_11735 chr1 184986445 184987582 + 0 NA intron (ENSMUSG00000026620.11, intron 1 of 8) protein_coding-intron (ENSMUSG00000026620.11, intron 1 of 17) 12462 ENSMUSG00000026620.11 ENSMUSG00000026620 ENSMUST00000192657 Mark1 protein_coding Interval_75189 chr17 64499325 64500183 + 0 NA Intergenic Intergenic 55906 ENSMUSG00000073377.9 ENSMUSG00000073377 ENSMUST00000168379 AU016765 lincRNA Interval_163944 chr9 29458088 29458991 + 0 NA intron (ENSMUSG00000059974.10, intron 1 of 2) protein_coding-intron (ENSMUSG00000059974.10, intron 1 of 7) 133971 ENSMUSG00000085638.1 ENSMUSG00000085638 ENSMUST00000141752 Gm15521 sense_intronic Interval_155331 chr8 31425451 31425803 + 0 NA Intergenic Intergenic 27596 ENSMUSG00000118533.1 ENSMUSG00000118533 ENSMUST00000238992 AC132410.1 processed_pseudogene Interval_37684 chr12 71102061 71102793 + 0 NA Intergenic Intergenic -9043 ENSMUSG00000021078.5 ENSMUSG00000021078 ENSMUST00000221962 Tomm20l protein_coding Interval_96652 chr2 126795769 126796463 + 0 NA promoter-TSS (ENSMUSG00000027365.14) protein_coding-promoter-TSS (ENSMUSG00000027365.14) 6509 ENSMUSG00000027365.14 ENSMUSG00000027365 ENSMUST00000152615 Trpm7 protein_coding Interval_113505 chr4 55387161 55387683 + 0 NA intron (ENSMUSG00000028426.10, intron 9 of 9) protein_coding-intron (ENSMUSG00000028426.10, intron 9 of 9) 5279 ENSMUSG00000084144.1 ENSMUSG00000084144 ENSMUST00000120819 Gm12516 processed_pseudogene Interval_167805 chr9 72801462 72801744 + 0 NA Intergenic Intergenic -25378 ENSMUSG00000098294.1 ENSMUSG00000098294 ENSMUST00000184673 Gm27204 lincRNA Interval_116385 chr4 111073963 111075011 + 0 NA intron (ENSMUSG00000061298.14, intron 4 of 12) protein_coding-intron (ENSMUSG00000061298.14, intron 4 of 12) -215631 ENSMUSG00000081068.1 ENSMUSG00000081068 ENSMUST00000121030 Gm12804 processed_pseudogene Interval_23631 chr11 23969329 23969804 + 0 NA Intergenic Intergenic -40712 ENSMUSG00000084206.1 ENSMUSG00000084206 ENSMUST00000117533 Gm12062 processed_pseudogene Interval_130173 chr5 124748282 124748537 + 0 NA exon (ENSMUSG00000038011.15, exon 13 of 79) protein_coding-exon (ENSMUSG00000038011.15, exon 13 of 79) -23330 ENSMUSG00000106082.4 ENSMUSG00000106082 ENSMUST00000199356 4930404A12Rik antisense Interval_50536 chr14 14769751 14771085 + 0 NA intron (ENSMUSG00000021733.11, intron 14 of 23) protein_coding-intron (ENSMUSG00000021733.11, intron 14 of 24) -32997 ENSMUSG00000042567.20 ENSMUSG00000042567 ENSMUST00000136826 Nek10 protein_coding Interval_43912 chr13 37999998 38000259 + 0 NA Intergenic Intergenic -6045 ENSMUSG00000021427.10 ENSMUSG00000021427 ENSMUST00000224399 Ssr1 protein_coding Interval_169146 chr9 94516823 94517114 + 0 NA TTS (ENSMUSG00000045414.7) protein_coding-TTS (ENSMUSG00000045414.7) 21113 ENSMUSG00000045414.7 ENSMUSG00000045414 ENSMUST00000113028 Dipk2a protein_coding Interval_34650 chr12 8357323 8357623 + 0 NA Intergenic Intergenic -20756 ENSMUSG00000111889.1 ENSMUSG00000111889 ENSMUST00000217669 Gm48071 antisense Interval_37405 chr12 67384149 67384465 + 0 NA Intergenic Intergenic -38557 ENSMUSG00000113364.1 ENSMUSG00000113364 ENSMUST00000222044 Gm48059 processed_pseudogene Interval_72421 chr17 29719884 29720250 + 0 NA TTS (ENSMUSG00000117434.1) bidirectional_promoter_lncRNA-TTS (ENSMUSG00000117434.1) 2995 ENSMUSG00000117434.1 ENSMUSG00000117434 ENSMUST00000234637 1810014P07Rik bidirectional_promoter_lncRNA Interval_123430 chr5 32469531 32469738 + 0 NA TTS (ENSMUSG00000107083.1) TEC-TTS (ENSMUSG00000107083.1) 2439 ENSMUSG00000107083.1 ENSMUSG00000107083 ENSMUST00000201398 Gm43313 TEC Interval_14811 chr10 40167286 40167695 + 0 NA intron (ENSMUSG00000110781.1, intron 2 of 3) lincRNA-intron (ENSMUSG00000110781.1, intron 2 of 3) 3380 ENSMUSG00000110781.1 ENSMUSG00000110781 ENSMUST00000213387 Gm31992 lincRNA Interval_127376 chr5 103579596 103580453 + 0 NA intron (ENSMUSG00000034573.14, intron 39 of 47) protein_coding-intron (ENSMUSG00000034573.14, intron 39 of 47) -22563 ENSMUSG00000088474.1 ENSMUSG00000088474 ENSMUST00000157849 Gm23085 misc_RNA Interval_134549 chr6 29496148 29496924 + 0 NA promoter-TSS (ENSMUSG00000059022.15) protein_coding-promoter-TSS (ENSMUSG00000059022.15) 2072 ENSMUSG00000059022.15 ENSMUSG00000059022 ENSMUST00000161237 Kcp protein_coding Interval_37412 chr12 67712286 67712931 + 0 NA Intergenic Intergenic -43332 ENSMUSG00000113657.1 ENSMUSG00000113657 ENSMUST00000223448 Gm17821 processed_pseudogene Interval_123240 chr5 30841984 30842246 + 0 NA intron (ENSMUSG00000029166.14, intron 1 of 1) protein_coding-intron (ENSMUSG00000029166.14, intron 1 of 6) -11684 ENSMUSG00000029166.14 ENSMUSG00000029166 ENSMUST00000202025 Mapre3 protein_coding Interval_137151 chr6 68398504 68399479 + 0 NA Intergenic Intergenic -9920 ENSMUSG00000105248.1 ENSMUSG00000105248 ENSMUST00000197861 Gm5310 processed_pseudogene Interval_36016 chr12 33313951 33314522 + 0 NA promoter-TSS (ENSMUSG00000020564.17) protein_coding-promoter-TSS (ENSMUSG00000020564.17) -164 ENSMUSG00000020564.17 ENSMUSG00000020564 ENSMUST00000142184 Atxn7l1 protein_coding Interval_26133 chr11 54675180 54675586 + 0 NA intron (ENSMUSG00000037533.20, intron 14 of 17) protein_coding-intron (ENSMUSG00000037533.20, intron 13 of 16) -16810 ENSMUSG00000093341.2 ENSMUSG00000093341 ENSMUST00000175600 Gm26116 miRNA Interval_144727 chr7 27806838 27807645 + 0 NA promoter-TSS (ENSMUSG00000030604.9) protein_coding-promoter-TSS (ENSMUSG00000030604.9) 45 ENSMUSG00000030604.9 ENSMUSG00000030604 ENSMUST00000080175 Zfp626 protein_coding Interval_167802 chr9 72791346 72792174 + 0 NA Intergenic Intergenic -15535 ENSMUSG00000098294.1 ENSMUSG00000098294 ENSMUST00000184673 Gm27204 lincRNA Interval_105959 chr3 90312178 90315197 + 0 NA exon (ENSMUSG00000108394.1, exon 1 of 1) TEC-exon (ENSMUSG00000108394.1, exon 1 of 1) 2169 ENSMUSG00000108394.1 ENSMUSG00000108394 ENSMUST00000200213 Gm45477 TEC Interval_92410 chr2 59596515 59597200 + 0 NA Intergenic Intergenic -32173 ENSMUSG00000081157.1 ENSMUSG00000081157 ENSMUST00000118837 Gm13552 processed_pseudogene Interval_83914 chr19 5543579 5544501 + 0 NA intron (ENSMUSG00000109695.1, intron 2 of 2) transcribed_processed_pseudogene-intron (ENSMUSG00000109695.1, intron 3 of 3) 12410 ENSMUSG00000109695.1 ENSMUSG00000109695 ENSMUST00000209326 Gm31166 transcribed_processed_pseudogene Interval_56871 chr14 122628166 122628385 + 0 NA intron (ENSMUSG00000041650.15, intron 3 of 8) protein_coding-intron (ENSMUSG00000041650.15, intron 7 of 23) -18162 ENSMUSG00000115256.1 ENSMUSG00000115256 ENSMUST00000227639 Gm49259 processed_pseudogene Interval_40567 chr12 105787682 105788001 + 0 NA intron (ENSMUSG00000021111.15, intron 1 of 6) protein_coding-intron (ENSMUSG00000021111.15, intron 1 of 22) -41226 ENSMUSG00000021111.15 ENSMUSG00000021111 ENSMUST00000172089 Papola protein_coding Interval_31892 chr11 103649219 103650465 + 0 NA exon (ENSMUSG00000046215.3, exon 1 of 1) protein_coding-exon (ENSMUSG00000046215.3, exon 1 of 1) 272 ENSMUSG00000046215.3 ENSMUSG00000046215 ENSMUST00000057870 Rprml protein_coding Interval_38845 chr12 83314817 83315562 + 0 NA intron (ENSMUSG00000021221.15, intron 6 of 10) protein_coding-intron (ENSMUSG00000021221.15, intron 4 of 6) 172527 ENSMUSG00000021221.15 ENSMUSG00000021221 ENSMUST00000177801 Dpf3 protein_coding Interval_155683 chr8 36139469 36139937 + 0 NA exon (ENSMUSG00000050271.12, exon 5 of 6) protein_coding-exon (ENSMUSG00000050271.12, exon 5 of 6) -19776 ENSMUSG00000109704.1 ENSMUSG00000109704 ENSMUST00000211253 Gm38414 lincRNA Interval_73804 chr17 43869949 43870249 + 0 NA intron (ENSMUSG00000039601.16, intron 2 of 4) protein_coding-intron (ENSMUSG00000039601.16, intron 2 of 4) 91742 ENSMUSG00000088576.1 ENSMUSG00000088576 ENSMUST00000157951 Gm24532 misc_RNA Interval_172790 chrX 49250581 49251506 + 0 NA intron (ENSMUSG00000031109.16, intron 1 of 3) protein_coding-intron (ENSMUSG00000031109.16, intron 2 of 15) 86135 ENSMUSG00000082347.1 ENSMUSG00000082347 ENSMUST00000118880 Gm15036 processed_pseudogene Interval_66072 chr16 31423919 31424932 + 0 NA intron (ENSMUSG00000046598.15, intron 1 of 6) protein_coding-intron (ENSMUSG00000046598.15, intron 1 of 6) -4367 ENSMUSG00000046598.15 ENSMUSG00000046598 ENSMUST00000126825 Bdh1 protein_coding Interval_172202 chrX 9077648 9078013 + 0 NA Intergenic Intergenic -2214 ENSMUSG00000083123.1 ENSMUSG00000083123 ENSMUST00000122268 Fthl17-ps2 unprocessed_pseudogene Interval_167745 chr9 72458018 72458702 + 0 NA TTS (ENSMUSG00000090626.9) protein_coding-TTS (ENSMUSG00000090626.9) -16581 ENSMUSG00000098778.1 ENSMUSG00000098778 ENSMUST00000185191 Gm27231 antisense Interval_127567 chr5 105414720 105416441 + 0 NA promoter-TSS (ENSMUSG00000070639.5) protein_coding-promoter-TSS (ENSMUSG00000070639.5) -195 ENSMUSG00000070639.5 ENSMUSG00000070639 ENSMUST00000112707 Lrrc8b protein_coding Interval_58739 chr15 37581617 37581908 + 0 NA intron (ENSMUSG00000051359.15, intron 3 of 6) protein_coding-intron (ENSMUSG00000051359.15, intron 3 of 6) -19932 ENSMUSG00000115095.1 ENSMUSG00000115095 ENSMUST00000228636 Gm49311 TEC Interval_55574 chr14 93072412 93072638 + 0 NA intron (ENSMUSG00000055421.8, intron 4 of 4) protein_coding-intron (ENSMUSG00000055421.8, intron 3 of 3) 65664 ENSMUSG00000065014.1 ENSMUSG00000065014 ENSMUST00000083080 Gm23509 snRNA Interval_150187 chr7 107708620 107709529 + 0 NA intron (ENSMUSG00000036528.16, intron 6 of 6) protein_coding-intron (ENSMUSG00000036528.16, intron 7 of 24) 43763 ENSMUSG00000036528.16 ENSMUSG00000036528 ENSMUST00000208159 Ppfibp2 protein_coding Interval_64586 chr16 13521447 13523238 + 0 NA Intergenic Intergenic -1923 ENSMUSG00000099411.1 ENSMUSG00000099411 ENSMUST00000186717 2310015D24Rik lincRNA Interval_94066 chr2 83614648 83614878 + 0 NA Intergenic Intergenic -41857 ENSMUSG00000027091.14 ENSMUSG00000027091 ENSMUST00000134789 Zc3h15 protein_coding Interval_139799 chr6 108807522 108807741 + 0 NA intron (ENSMUSG00000030105.8, intron 1 of 6) protein_coding-intron (ENSMUSG00000030105.8, intron 1 of 6) 12734 ENSMUSG00000030105.8 ENSMUSG00000030105 ENSMUST00000204483 Arl8b protein_coding Interval_143399 chr7 6392497 6392935 + 0 NA intron (ENSMUSG00000062861.8, intron 4 of 4) protein_coding-intron (ENSMUSG00000062861.8, intron 6 of 6) -5999 ENSMUSG00000093536.7 ENSMUSG00000093536 ENSMUST00000160218 Smim17 protein_coding Interval_28553 chr11 76674423 76674965 + 0 NA Intergenic Intergenic 2224 ENSMUSG00000044243.3 ENSMUSG00000044243 ENSMUST00000056184 Bhlha9 protein_coding Interval_99986 chr2 166252030 166253286 + 0 NA Intergenic Intergenic -21250 ENSMUSG00000084840.1 ENSMUSG00000084840 ENSMUST00000152987 Gm11468 lincRNA Interval_83350 chr18 84510755 84511801 + 0 NA intron (ENSMUSG00000048410.17, intron 2 of 2) protein_coding-intron (ENSMUSG00000048410.17, intron 2 of 2) -76343 ENSMUSG00000048410.17 ENSMUSG00000048410 ENSMUST00000182297 Zfp407 protein_coding Interval_2972 chr1 51741821 51744228 + 0 NA intron (ENSMUSG00000101741.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000101741.1, intron 1 of 1) -45124 ENSMUSG00000101741.1 ENSMUSG00000101741 ENSMUST00000186769 Gm28055 lincRNA Interval_91953 chr2 52002704 52002913 + 0 NA Intergenic Intergenic -29314 ENSMUSG00000026946.9 ENSMUSG00000026946 ENSMUST00000123521 Nmi protein_coding Interval_129420 chr5 119983724 119984123 + 0 NA Intergenic Intergenic 24680 ENSMUSG00000107063.1 ENSMUSG00000107063 ENSMUST00000201639 Gm38554 lincRNA Interval_137849 chr6 82917643 82918238 + 0 NA promoter-TSS (ENSMUSG00000000627.15) protein_coding-promoter-TSS (ENSMUSG00000000627.15) -19840 ENSMUSG00000109076.1 ENSMUSG00000109076 ENSMUST00000208233 Gm45145 lincRNA Interval_151688 chr7 126054866 126055148 + 0 NA intron (ENSMUSG00000046182.8, intron 1 of 6) protein_coding-intron (ENSMUSG00000046182.8, intron 1 of 6) 9440 ENSMUSG00000108376.1 ENSMUSG00000108376 ENSMUST00000206586 Gm44874 TEC Interval_170667 chr9 109971467 109972656 + 0 NA TTS (ENSMUSG00000106208.1) processed_pseudogene-TTS (ENSMUSG00000106208.1) 1628 ENSMUSG00000106208.1 ENSMUSG00000106208 ENSMUST00000200117 Gm4734 processed_pseudogene Interval_105705 chr3 88664296 88665287 + 0 NA Intergenic Intergenic -11649 ENSMUSG00000049741.4 ENSMUSG00000049741 ENSMUST00000063119 Rxfp4 protein_coding Interval_47141 chr13 76251073 76251363 + 0 NA intron (ENSMUSG00000109228.2, intron 5 of 10) protein_coding-intron (ENSMUSG00000109228.2, intron 5 of 10) -1366 ENSMUSG00000109228.2 ENSMUSG00000109228 ENSMUST00000208586 Fam81b protein_coding Interval_135162 chr6 37089666 37089959 + 0 NA intron (ENSMUSG00000038665.15, intron 5 of 32) protein_coding-intron (ENSMUSG00000038665.15, intron 5 of 32) 132962 ENSMUSG00000107310.1 ENSMUSG00000107310 ENSMUST00000202891 Gm7452 transcribed_processed_pseudogene Interval_42687 chr13 17959652 17960156 + 0 NA TTS (ENSMUSG00000114077.1) transcribed_processed_pseudogene-TTS (ENSMUSG00000114077.1) 1512 ENSMUSG00000114077.1 ENSMUSG00000114077 ENSMUST00000221430 Gm48776 transcribed_processed_pseudogene Interval_46537 chr13 66932370 66934000 + 0 NA promoter-TSS (ENSMUSG00000021519.11) protein_coding-promoter-TSS (ENSMUSG00000021519.11) -171 ENSMUSG00000021519.11 ENSMUSG00000021519 ENSMUST00000173062 Mterf3 protein_coding Interval_19771 chr10 108635493 108635939 + 0 NA intron (ENSMUSG00000035864.14, intron 6 of 7) protein_coding-intron (ENSMUSG00000035864.14, intron 6 of 10) 64444 ENSMUSG00000112039.1 ENSMUSG00000112039 ENSMUST00000218023 Gm5136 protein_coding Interval_35829 chr12 30890027 30890276 + 0 NA intron (ENSMUSG00000054204.6, intron 4 of 4) protein_coding-intron (ENSMUSG00000054204.6, intron 4 of 4) 5829 ENSMUSG00000054204.6 ENSMUSG00000054204 ENSMUST00000067087 Alkal2 protein_coding Interval_87789 chr19 55880588 55881155 + 0 NA intron (ENSMUSG00000024985.20, intron 5 of 7) protein_coding-intron (ENSMUSG00000024985.20, intron 4 of 11) 39199 ENSMUSG00000099746.1 ENSMUSG00000099746 ENSMUST00000190974 Ppnr sense_intronic Interval_141693 chr6 133582434 133583073 + 0 NA Intergenic Intergenic -14532 ENSMUSG00000107765.1 ENSMUSG00000107765 ENSMUST00000204606 Gm34224 unprocessed_pseudogene Interval_56907 chr14 123095091 123095692 + 0 NA intron (ENSMUSG00000115016.1, intron 1 of 3) processed_transcript-intron (ENSMUSG00000115016.1, intron 1 of 3) 52109 ENSMUSG00000115016.1 ENSMUSG00000115016 ENSMUST00000226524 AA536875 processed_transcript Interval_7967 chr1 134930653 134930908 + 0 NA intron (ENSMUSG00000073557.12, intron 1 of 24) protein_coding-intron (ENSMUSG00000073557.12, intron 1 of 23) -31838 ENSMUSG00000026429.9 ENSMUSG00000026429 ENSMUST00000139617 Ube2t protein_coding Interval_78277 chr18 11465163 11466500 + 0 NA Intergenic Intergenic -159084 ENSMUSG00000117535.1 ENSMUSG00000117535 ENSMUST00000234170 Gm50067 processed_pseudogene Interval_3000 chr1 52025501 52025983 + 0 NA intron (ENSMUSG00000062939.11, intron 2 of 4) protein_coding-intron (ENSMUSG00000062939.11, intron 3 of 23) -51519 ENSMUSG00000101628.1 ENSMUSG00000101628 ENSMUST00000185516 Gm28177 processed_transcript Interval_131879 chr5 140557105 140557550 + 0 NA Intergenic Intergenic 7744 ENSMUSG00000036586.6 ENSMUSG00000036586 ENSMUST00000042993 Grifin protein_coding Interval_107365 chr3 106714550 106715050 + 0 NA intron (ENSMUSG00000056260.15, intron 1 of 2) protein_coding-intron (ENSMUSG00000056260.15, intron 1 of 2) -10799 ENSMUSG00000102780.1 ENSMUSG00000102780 ENSMUST00000194058 Gm38253 TEC Interval_79234 chr18 26554218 26555112 + 0 NA Intergenic Intergenic 59230 ENSMUSG00000088098.1 ENSMUSG00000088098 ENSMUST00000157473 Gm23674 snoRNA Interval_32891 chr11 112839724 112840971 + 0 NA Intergenic Intergenic 15168 ENSMUSG00000020624.3 ENSMUSG00000020624 ENSMUST00000153429 4933434M16Rik lincRNA Interval_128080 chr5 110755772 110756544 + 0 NA promoter-TSS (ENSMUSG00000096238.1) snRNA-promoter-TSS (ENSMUSG00000096238.1) -927 ENSMUSG00000096238.1 ENSMUSG00000096238 ENSMUST00000178031 Gm22583 snRNA Interval_93703 chr2 75990769 75992447 + 0 NA intron (ENSMUSG00000075270.11, intron 19 of 19) protein_coding-intron (ENSMUSG00000075270.11, intron 19 of 19) -9641 ENSMUSG00000075271.4 ENSMUSG00000075271 ENSMUST00000099994 Ttc30a1 protein_coding Interval_107894 chr3 116643110 116643377 + 0 NA intron (ENSMUSG00000105103.1, intron 6 of 6) protein_coding-intron (ENSMUSG00000089911.4, intron 5 of 11) -6770 ENSMUSG00000089911.4 ENSMUSG00000089911 ENSMUST00000150402 Mfsd14a protein_coding Interval_125521 chr5 67959113 67959326 + 0 NA intron (ENSMUSG00000094719.4, intron 2 of 3) protein_coding-intron (ENSMUSG00000094719.4, intron 2 of 3) -12798 ENSMUSG00000095346.1 ENSMUSG00000095346 ENSMUST00000177616 Gm21905 protein_coding Interval_32648 chr11 109388042 109388468 + 0 NA intron (ENSMUSG00000020611.14, intron 2 of 3) protein_coding-intron (ENSMUSG00000020611.14, intron 2 of 3) -25012 ENSMUSG00000056687.9 ENSMUSG00000056687 ENSMUST00000190563 Gm11696 antisense Interval_106192 chr3 94484167 94484537 + 0 NA promoter-TSS (ENSMUSG00000028137.9) protein_coding-promoter-TSS (ENSMUSG00000028137.9) 5858 ENSMUSG00000028137.9 ENSMUSG00000028137 ENSMUST00000197033 Celf3 protein_coding Interval_81102 chr18 53889076 53889325 + 0 NA intron (ENSMUSG00000073563.3, intron 1 of 12) protein_coding-intron (ENSMUSG00000073563.3, intron 1 of 12) 27012 ENSMUSG00000073563.3 ENSMUSG00000073563 ENSMUST00000236399 Csnk1g3 protein_coding Interval_52438 chr14 46391574 46392109 + 0 NA Intergenic Intergenic 4288 ENSMUSG00000086746.2 ENSMUSG00000086746 ENSMUST00000228667 Gm15222 antisense Interval_42010 chr13 6515229 6515990 + 0 NA Intergenic Intergenic -14986 ENSMUSG00000114195.1 ENSMUSG00000114195 ENSMUST00000221776 2900042G08Rik TEC Interval_72893 chr17 33000053 33000398 + 0 NA intron (ENSMUSG00000053390.16, intron 2 of 4) protein_coding-intron (ENSMUSG00000053390.16, intron 1 of 3) 7024 ENSMUSG00000053390.16 ENSMUSG00000053390 ENSMUST00000157017 Zfp952 protein_coding Interval_16057 chr10 60392601 60393062 + 0 NA intron (ENSMUSG00000012819.15, intron 27 of 65) protein_coding-intron (ENSMUSG00000012819.15, intron 27 of 66) -7073 ENSMUSG00000090439.3 ENSMUSG00000090439 ENSMUST00000218360 Gm17455 protein_coding Interval_49561 chr13 112976378 112977701 + 0 NA Intergenic Intergenic -10765 ENSMUSG00000042417.5 ENSMUSG00000042417 ENSMUST00000224100 Ccno protein_coding Interval_112466 chr4 41407824 41408042 + 0 NA intron (ENSMUSG00000028438.16, intron 3 of 9) protein_coding-intron (ENSMUSG00000028438.16, intron 3 of 9) 36685 ENSMUSG00000028437.14 ENSMUSG00000028437 ENSMUST00000132235 Ubap1 protein_coding Interval_137003 chr6 65926804 65927001 + 0 NA intron (ENSMUSG00000029913.14, intron 4 of 5) protein_coding-intron (ENSMUSG00000029913.14, intron 9 of 10) -25707 ENSMUSG00000036463.8 ENSMUSG00000036463 ENSMUST00000043382 4930544G11Rik protein_coding Interval_42487 chr13 14038944 14039979 + 0 NA intron (ENSMUSG00000039233.12, intron 1 of 16) protein_coding-intron (ENSMUSG00000039233.12, intron 1 of 16) -1931 ENSMUSG00000113819.1 ENSMUSG00000113819 ENSMUST00000220914 Gm48017 processed_pseudogene Interval_157139 chr8 66275510 66275714 + 0 NA intron (ENSMUSG00000036469.16, intron 1 of 5) protein_coding-intron (ENSMUSG00000036469.16, intron 1 of 5) 111923 ENSMUSG00000086156.1 ENSMUSG00000086156 ENSMUST00000132019 Gm15354 antisense Interval_160677 chr8 111545557 111546092 + 0 NA intron (ENSMUSG00000033545.14, intron 1 of 3) protein_coding-intron (ENSMUSG00000033545.14, intron 1 of 3) 8246 ENSMUSG00000033545.14 ENSMUSG00000033545 ENSMUST00000173819 Znrf1 protein_coding Interval_26576 chr11 59006276 59006738 + 0 NA exon (ENSMUSG00000072902.4, exon 3 of 3) antisense-exon (ENSMUSG00000072902.4, exon 3 of 3) 3597 ENSMUSG00000072902.4 ENSMUSG00000072902 ENSMUST00000101162 Gm10435 antisense Interval_99928 chr2 165960831 165962325 + 0 NA Intergenic Intergenic 1789 ENSMUSG00000082924.1 ENSMUSG00000082924 ENSMUST00000117749 Gm11462 processed_pseudogene Interval_25700 chr11 50866514 50866778 + 0 NA TTS (ENSMUSG00000000617.14) protein_coding-TTS (ENSMUSG00000000617.14) -14064 ENSMUSG00000086226.1 ENSMUSG00000086226 ENSMUST00000123764 Gm12660 antisense Interval_35919 chr12 31936622 31937244 + 0 NA TTS (ENSMUSG00000002996.17) protein_coding-TTS (ENSMUSG00000002996.17) 3474 ENSMUSG00000002996.17 ENSMUSG00000002996 ENSMUST00000175666 Hbp1 protein_coding Interval_129105 chr5 117428584 117428866 + 0 NA intron (ENSMUSG00000061578.8, intron 1 of 20) protein_coding-intron (ENSMUSG00000061578.8, intron 1 of 3) 14725 ENSMUSG00000061578.8 ENSMUSG00000061578 ENSMUST00000180430 Ksr2 protein_coding Interval_50876 chr14 20393204 20393944 + 0 NA promoter-TSS (ENSMUSG00000049960.4) protein_coding-promoter-TSS (ENSMUSG00000049960.4) -91 ENSMUSG00000049960.4 ENSMUSG00000049960 ENSMUST00000224286 Mrps16 protein_coding Interval_47053 chr13 74853460 74855088 + 0 NA Intergenic Intergenic -10031 ENSMUSG00000086743.2 ENSMUSG00000086743 ENSMUST00000129154 Hnrnpa1l2-ps processed_pseudogene Interval_58418 chr15 34369367 34369644 + 0 NA intron (ENSMUSG00000022324.15, intron 4 of 13) protein_coding-intron (ENSMUSG00000022324.15, intron 4 of 18) -11633 ENSMUSG00000094447.2 ENSMUSG00000094447 ENSMUST00000179647 9430069I07Rik protein_coding Interval_170553 chr9 108654167 108656753 + 0 NA Intergenic Intergenic -1732 ENSMUSG00000095798.1 ENSMUSG00000095798 ENSMUST00000116956 Gm26298 miRNA Interval_47849 chr13 93771146 93772440 + 0 NA promoter-TSS (ENSMUSG00000042082.7) protein_coding-promoter-TSS (ENSMUSG00000042082.7) 97 ENSMUSG00000042082.7 ENSMUSG00000042082 ENSMUST00000220652 Arsb protein_coding Interval_101681 chr3 8912871 8913981 + 0 NA intron (ENSMUSG00000040269.5, intron 1 of 2) protein_coding-intron (ENSMUSG00000040269.5, intron 1 of 2) 10492 ENSMUSG00000040269.5 ENSMUSG00000040269 ENSMUST00000042148 Mrps28 protein_coding Interval_147030 chr7 58769928 58770857 + 0 NA intron (ENSMUSG00000025324.8, intron 2 of 20) protein_coding-intron (ENSMUSG00000025324.8, intron 2 of 20) 50193 ENSMUSG00000109434.1 ENSMUSG00000109434 ENSMUST00000207705 Gm44937 TEC Interval_137445 chr6 72495051 72496223 + 0 NA Intergenic Intergenic 24399 ENSMUSG00000052631.15 ENSMUSG00000052631 ENSMUST00000159577 Sh2d6 protein_coding Interval_156660 chr8 56557679 56557889 + 0 NA intron (ENSMUSG00000038206.13, intron 1 of 2) protein_coding-intron (ENSMUSG00000038206.13, intron 1 of 5) -3132 ENSMUSG00000110318.1 ENSMUSG00000110318 ENSMUST00000209582 Gm2767 processed_pseudogene Interval_137944 chr6 83598750 83599913 + 0 NA Intergenic Intergenic 2377 ENSMUSG00000108609.1 ENSMUSG00000108609 ENSMUST00000206919 Gm7424 processed_pseudogene Interval_151192 chr7 119329875 119331008 + 0 NA Intergenic Intergenic -24193 ENSMUSG00000077653.1 ENSMUSG00000077653 ENSMUST00000104465 Gm23321 snoRNA Interval_152199 chr7 130598295 130598968 + 0 NA intron (ENSMUSG00000030852.18, intron 1 of 4) protein_coding-intron (ENSMUSG00000030852.18, intron 1 of 20) 55761 ENSMUSG00000109225.1 ENSMUSG00000109225 ENSMUST00000207466 4930513N20Rik TEC Interval_50391 chr14 12374686 12375646 + 0 NA intron (ENSMUSG00000114230.1, intron 1 of 3) protein_coding-intron (ENSMUSG00000054423.14, intron 28 of 28) 581 ENSMUSG00000114230.1 ENSMUSG00000114230 ENSMUST00000223597 Gm48239 antisense Interval_157318 chr8 69251150 69252469 + 0 NA Intergenic Intergenic -11779 ENSMUSG00000110657.1 ENSMUSG00000110657 ENSMUST00000211891 Gm7684 processed_pseudogene Interval_75298 chr17 65760020 65761037 + 0 NA intron (ENSMUSG00000056515.9, intron 1 of 2) protein_coding-intron (ENSMUSG00000056515.9, intron 1 of 6) 12112 ENSMUSG00000056515.9 ENSMUSG00000056515 ENSMUST00000233258 Rab31 protein_coding Interval_163652 chr9 23233337 23233964 + 0 NA intron (ENSMUSG00000031963.8, intron 2 of 14) protein_coding-intron (ENSMUSG00000031963.8, intron 2 of 14) 10364 ENSMUSG00000031963.8 ENSMUSG00000031963 ENSMUST00000214050 Bmper protein_coding Interval_69656 chr16 94956201 94956623 + 0 NA intron (ENSMUSG00000043301.16, intron 1 of 2) protein_coding-intron (ENSMUSG00000043301.16, intron 1 of 4) 86948 ENSMUSG00000095435.1 ENSMUSG00000095435 ENSMUST00000175509 Gm22745 miRNA Interval_107219 chr3 104697671 104697876 + 0 NA Intergenic Intergenic -3097 ENSMUSG00000089452.1 ENSMUSG00000089452 ENSMUST00000158827 Gm24223 snRNA Interval_81508 chr18 61267106 61269177 + 0 NA intron (ENSMUSG00000024575.16, intron 17 of 21) protein_coding-intron (ENSMUSG00000024575.16, intron 17 of 21) -6882 ENSMUSG00000024575.16 ENSMUSG00000024575 ENSMUST00000135688 Pde6a protein_coding Interval_79079 chr18 24382689 24383407 + 0 NA Intergenic Intergenic 43682 ENSMUSG00000117570.1 ENSMUSG00000117570 ENSMUST00000234938 Gm38410 lincRNA Interval_80512 chr18 43175495 43178684 + 0 NA Intergenic Intergenic -5901 ENSMUSG00000117792.1 ENSMUSG00000117792 ENSMUST00000235443 4930588A03Rik processed_transcript Interval_2556 chr1 40318377 40318919 + 0 NA Intergenic Intergenic -6042 ENSMUSG00000070942.8 ENSMUSG00000070942 ENSMUST00000193388 Il1rl2 protein_coding Interval_1575 chr1 27260517 27260722 + 0 NA Intergenic Intergenic 76149 ENSMUSG00000100310.1 ENSMUSG00000100310 ENSMUST00000188432 Gm19641 processed_pseudogene Interval_138895 chr6 93130980 93132056 + 0 NA intron (ENSMUSG00000097462.7, intron 2 of 9) antisense-intron (ENSMUSG00000097462.7, intron 2 of 9) 6472 ENSMUSG00000097996.1 ENSMUSG00000097996 ENSMUST00000182893 Gm5313 processed_pseudogene Interval_44096 chr13 40862972 40864354 + 0 NA intron (ENSMUSG00000021360.16, intron 1 of 2) protein_coding-intron (ENSMUSG00000021360.16, intron 1 of 2) -2128 ENSMUSG00000093269.1 ENSMUSG00000093269 ENSMUST00000175528 Mir5124a miRNA Interval_11345 chr1 181099538 181099746 + 0 NA intron (ENSMUSG00000026516.8, intron 2 of 3) protein_coding-intron (ENSMUSG00000026516.8, intron 19 of 22) -4117 ENSMUSG00000026516.8 ENSMUSG00000026516 ENSMUST00000193758 Nvl protein_coding Interval_58802 chr15 38151417 38151981 + 0 NA Intergenic Intergenic 50518 ENSMUSG00000115680.1 ENSMUSG00000115680 ENSMUST00000227576 Gm35167 lincRNA Interval_711 chr1 10084091 10086062 + 0 NA intron (ENSMUSG00000056763.16, intron 4 of 6) protein_coding-intron (ENSMUSG00000056763.16, intron 11 of 29) -27132 ENSMUSG00000102356.1 ENSMUSG00000102356 ENSMUST00000194474 1700047N06Rik TEC Interval_143421 chr7 6652530 6653290 + 0 NA intron (ENSMUSG00000108113.2, intron 4 of 4) processed_transcript-intron (ENSMUSG00000108113.2, intron 2 of 2) 9458 ENSMUSG00000108113.2 ENSMUSG00000108113 ENSMUST00000203156 Zim2 processed_transcript Interval_65703 chr16 25644691 25645385 + 0 NA Intergenic Intergenic -38727 ENSMUSG00000022510.14 ENSMUSG00000022510 ENSMUST00000115306 Trp63 protein_coding Interval_45034 chr13 51638781 51639408 + 0 NA Intergenic Intergenic -6138 ENSMUSG00000062248.5 ENSMUSG00000062248 ENSMUST00000075853 Cks2 protein_coding Interval_7945 chr1 134704606 134705386 + 0 NA intron (ENSMUSG00000026452.15, intron 2 of 9) protein_coding-intron (ENSMUSG00000026452.15, intron 1 of 2) 58315 ENSMUSG00000026452.15 ENSMUSG00000026452 ENSMUST00000187702 Syt2 protein_coding Interval_19171 chr10 95276111 95277123 + 0 NA intron (ENSMUSG00000045867.10, intron 2 of 2) protein_coding-intron (ENSMUSG00000045867.10, intron 2 of 2) 38236 ENSMUSG00000112744.1 ENSMUSG00000112744 ENSMUST00000219461 Gm48880 TEC Interval_19139 chr10 94990924 94992493 + 0 NA Intergenic Intergenic 7734 ENSMUSG00000112277.1 ENSMUSG00000112277 ENSMUST00000218192 Gm48867 lincRNA Interval_148805 chr7 88142666 88143067 + 0 NA Intergenic Intergenic 23708 ENSMUSG00000108993.1 ENSMUSG00000108993 ENSMUST00000207127 Gm44846 TEC Interval_104093 chr3 58539935 58540292 + 0 NA intron (ENSMUSG00000027810.14, intron 4 of 8) protein_coding-intron (ENSMUSG00000027810.14, intron 4 of 13) 13183 ENSMUSG00000106553.1 ENSMUSG00000106553 ENSMUST00000199552 6720482G16Rik TEC Interval_49369 chr13 111527062 111528308 + 0 NA intron (ENSMUSG00000085634.2, intron 1 of 1) lincRNA-intron (ENSMUSG00000085634.2, intron 1 of 1) 22226 ENSMUSG00000085634.2 ENSMUSG00000085634 ENSMUST00000132880 Gm15290 lincRNA Interval_140084 chr6 113947421 113947718 + 0 NA intron (ENSMUSG00000030302.16, intron 2 of 3) protein_coding-intron (ENSMUSG00000030302.16, intron 2 of 21) 9830 ENSMUSG00000087053.1 ENSMUSG00000087053 ENSMUST00000147045 Gm15082 antisense Interval_114512 chr4 81764188 81764452 + 0 NA Intergenic Intergenic 21174 ENSMUSG00000087540.1 ENSMUSG00000087540 ENSMUST00000144875 Gm11412 lincRNA Interval_100307 chr2 168302640 168303145 + 0 NA Intergenic Intergenic -7771 ENSMUSG00000086783.1 ENSMUSG00000086783 ENSMUST00000148309 Gm14262 lincRNA Interval_50125 chr14 8139614 8140794 + 0 NA intron (ENSMUSG00000033885.15, intron 7 of 17) protein_coding-intron (ENSMUSG00000033885.15, intron 7 of 17) 26892 ENSMUSG00000021748.9 ENSMUSG00000021748 ENSMUST00000224690 Pdhb protein_coding Interval_161269 chr8 119412268 119413315 + 0 NA Intergenic Intergenic 17893 ENSMUSG00000074064.6 ENSMUSG00000074064 ENSMUST00000145121 Mlycd protein_coding Interval_159364 chr8 94076605 94076845 + 0 NA intron (ENSMUSG00000031755.6, intron 2 of 2) protein_coding-intron (ENSMUSG00000031755.6, intron 13 of 16) 3031 ENSMUSG00000031755.6 ENSMUSG00000031755 ENSMUST00000172347 Bbs2 protein_coding Interval_57318 chr15 8715540 8717321 + 0 NA Intergenic Intergenic -6021 ENSMUSG00000005360.14 ENSMUSG00000005360 ENSMUST00000126747 Slc1a3 protein_coding Interval_132899 chr5 148624603 148625288 + 0 NA Intergenic Intergenic -11301 ENSMUSG00000107098.1 ENSMUSG00000107098 ENSMUST00000202418 Gm29815 processed_pseudogene Interval_154667 chr8 22462322 22462492 + 0 NA TTS (ENSMUSG00000031534.15) protein_coding-TTS (ENSMUSG00000031534.15) 14448 ENSMUSG00000031534.15 ENSMUSG00000031534 ENSMUST00000033935 Smim19 protein_coding Interval_7142 chr1 127182517 127182798 + 0 NA Intergenic Intergenic -22371 ENSMUSG00000036155.13 ENSMUSG00000036155 ENSMUST00000171405 Mgat5 protein_coding Interval_99865 chr2 165387802 165388427 + 0 NA exon (ENSMUSG00000017667.9, exon 1 of 5) protein_coding-exon (ENSMUSG00000017667.9, exon 1 of 5) 145 ENSMUSG00000017667.9 ENSMUSG00000017667 ENSMUST00000103084 Zfp334 protein_coding Interval_163381 chr9 21181383 21182040 + 0 NA promoter-TSS (ENSMUSG00000032177.17) protein_coding-promoter-TSS (ENSMUSG00000032177.17) -2390 ENSMUSG00000032177.17 ENSMUSG00000032177 ENSMUST00000003395 Pde4a protein_coding Interval_89360 chr2 19758978 19759603 + 0 NA Intergenic Intergenic 68002 ENSMUSG00000077342.1 ENSMUSG00000077342 ENSMUST00000104154 Gm24670 snoRNA Interval_65677 chr16 25064498 25065520 + 0 NA intron (ENSMUSG00000096960.1, intron 2 of 2) lincRNA-intron (ENSMUSG00000096960.1, intron 2 of 2) 5370 ENSMUSG00000096960.1 ENSMUSG00000096960 ENSMUST00000181655 A230028O05Rik lincRNA Interval_145134 chr7 30215593 30217407 + 0 NA Intergenic Intergenic -3762 ENSMUSG00000109142.1 ENSMUSG00000109142 ENSMUST00000208540 Gm44600 processed_pseudogene Interval_45415 chr13 55005837 55006415 + 0 NA TTS (ENSMUSG00000025876.15) protein_coding-TTS (ENSMUSG00000025876.15) 3116 ENSMUSG00000025876.15 ENSMUSG00000025876 ENSMUST00000137967 Unc5a protein_coding Interval_50596 chr14 16328164 16329477 + 0 NA Intergenic Intergenic 24309 ENSMUSG00000114253.1 ENSMUSG00000114253 ENSMUST00000224494 Gm47798 sense_intronic Interval_104905 chr3 78918776 78919790 + 0 NA Intergenic Intergenic 2025 ENSMUSG00000070443.6 ENSMUSG00000070443 ENSMUST00000094175 Gm10291 processed_pseudogene Interval_48843 chr13 103977907 103978858 + 0 NA promoter-TSS (ENSMUSG00000114637.1) lincRNA-promoter-TSS (ENSMUSG00000114637.1) -52 ENSMUSG00000114637.1 ENSMUSG00000114637 ENSMUST00000224348 Gm47851 lincRNA Interval_85426 chr19 25714660 25715264 + 0 NA Intergenic Intergenic 42551 ENSMUSG00000048138.10 ENSMUSG00000048138 ENSMUST00000053068 Dmrt2 protein_coding Interval_133575 chr6 6955348 6956820 + 0 NA promoter-TSS (ENSMUSG00000042505.6) protein_coding-promoter-TSS (ENSMUSG00000042505.6) 77 ENSMUSG00000042505.6 ENSMUSG00000042505 ENSMUST00000123848 Sdhaf3 protein_coding Interval_172825 chrX 50620001 50620612 + 0 NA intron (ENSMUSG00000085396.7, intron 3 of 19) processed_transcript-intron (ENSMUSG00000085396.7, intron 3 of 6) -55423 ENSMUSG00000085396.7 ENSMUSG00000085396 ENSMUST00000148530 Firre processed_transcript Interval_20175 chr10 115412798 115413268 + 0 NA intron (ENSMUSG00000034163.10, intron 16 of 34) protein_coding-intron (ENSMUSG00000034163.10, intron 16 of 34) -15474 ENSMUSG00000034163.10 ENSMUSG00000034163 ENSMUST00000141246 Zfc3h1 protein_coding Interval_97528 chr2 138690135 138690371 + 0 NA Intergenic Intergenic 100861 ENSMUSG00000085911.1 ENSMUSG00000085911 ENSMUST00000155923 Gm14061 lincRNA Interval_123168 chr5 30279143 30279603 + 0 NA Intergenic Intergenic -38925 ENSMUSG00000085099.1 ENSMUSG00000085099 ENSMUST00000137940 Gm16288 processed_pseudogene Interval_9793 chr1 162413773 162414398 + 0 NA intron (ENSMUSG00000040265.16, intron 1 of 5) protein_coding-intron (ENSMUSG00000040265.16, intron 1 of 19) -6750 ENSMUSG00000040265.16 ENSMUSG00000040265 ENSMUST00000195768 Dnm3 protein_coding Interval_20118 chr10 115013420 115014070 + 0 NA Intergenic Intergenic 22204 ENSMUSG00000096208.1 ENSMUSG00000096208 ENSMUST00000178475 Gm22070 snRNA Interval_32578 chr11 108785420 108786069 + 0 NA intron (ENSMUSG00000020728.17, intron 4 of 5) protein_coding-intron (ENSMUSG00000020728.17, intron 24 of 27) -34589 ENSMUSG00000085811.1 ENSMUSG00000085811 ENSMUST00000143781 Cep112it sense_intronic Interval_21569 chr10 130086438 130086687 + 0 NA Intergenic Intergenic 7282 ENSMUSG00000108253.1 ENSMUSG00000108253 ENSMUST00000204175 Olfr1542-ps1 unprocessed_pseudogene Interval_164804 chr9 42021044 42021491 + 0 NA intron (ENSMUSG00000049313.8, intron 23 of 47) protein_coding-intron (ENSMUSG00000049313.8, intron 23 of 47) -1348 ENSMUSG00000086360.1 ENSMUSG00000086360 ENSMUST00000143710 Gm16214 antisense Interval_105663 chr3 88455233 88456153 + 0 NA promoter-TSS (ENSMUSG00000028064.17) protein_coding-promoter-TSS (ENSMUSG00000028064.17) -4243 ENSMUSG00000028064.17 ENSMUSG00000028064 ENSMUST00000146921 Sema4a protein_coding Interval_39693 chr12 93088135 93088393 + 0 NA Intergenic Intergenic -90113 ENSMUSG00000113194.1 ENSMUSG00000113194 ENSMUST00000223384 Gm47998 processed_pseudogene Interval_96238 chr2 120849802 120851117 + 0 NA promoter-TSS (ENSMUSG00000090100.7) protein_coding-promoter-TSS (ENSMUSG00000090100.7) -69 ENSMUSG00000090100.7 ENSMUSG00000090100 ENSMUST00000141921 Ttbk2 protein_coding Interval_125031 chr5 63968348 63969469 + 0 NA promoter-TSS (ENSMUSG00000047881.14) protein_coding-promoter-TSS (ENSMUSG00000047881.14) 21963 ENSMUSG00000106076.1 ENSMUSG00000106076 ENSMUST00000199444 Gm43840 processed_pseudogene Interval_8330 chr1 137387355 137388170 + 0 NA Intergenic Intergenic -20515 ENSMUSG00000088164.1 ENSMUSG00000088164 ENSMUST00000157539 Gm23534 snoRNA Interval_126608 chr5 90890612 90891741 + 0 NA promoter-TSS (ENSMUSG00000029380.11) protein_coding-promoter-TSS (ENSMUSG00000029380.11) -67 ENSMUSG00000029380.11 ENSMUSG00000029380 ENSMUST00000201245 Cxcl1 protein_coding Interval_51094 chr14 22589149 22589985 + 0 NA intron (ENSMUSG00000063458.13, intron 4 of 6) protein_coding-intron (ENSMUSG00000063458.13, intron 4 of 6) -6946 ENSMUSG00000063458.13 ENSMUSG00000063458 ENSMUST00000226003 Lrmda protein_coding Interval_171636 chr9 119762747 119763056 + 0 NA intron (ENSMUSG00000034115.10, intron 24 of 26) protein_coding-intron (ENSMUSG00000034115.10, intron 24 of 26) 60959 ENSMUSG00000034115.10 ENSMUSG00000034115 ENSMUST00000070617 Scn11a protein_coding Interval_43580 chr13 33808530 33809235 + 0 NA intron (ENSMUSG00000080317.3, intron 3 of 3) unprocessed_pseudogene-intron (ENSMUSG00000080317.3, intron 3 of 3) 34526 ENSMUSG00000069248.11 ENSMUSG00000069248 ENSMUST00000145221 Serpinb6e protein_coding Interval_118478 chr4 131916411 131916725 + 0 NA intron (ENSMUSG00000085667.1, intron 1 of 4) processed_transcript-intron (ENSMUSG00000085667.1, intron 1 of 4) -1052 ENSMUSG00000085667.1 ENSMUSG00000085667 ENSMUST00000132111 Gm12992 processed_transcript Interval_79615 chr18 34024044 34025702 + 0 NA promoter-TSS (ENSMUSG00000088501.1) snRNA-promoter-TSS (ENSMUSG00000088501.1) -593 ENSMUSG00000088501.1 ENSMUSG00000088501 ENSMUST00000157876 Gm22788 snRNA Interval_143151 chr7 3692500 3694933 + 0 NA promoter-TSS (ENSMUSG00000035585.16) protein_coding-promoter-TSS (ENSMUSG00000035585.16) -730 ENSMUSG00000035596.14 ENSMUSG00000035596 ENSMUST00000206448 Mboat7 protein_coding Interval_131262 chr5 136052776 136053686 + 0 NA Intergenic Intergenic -4036 ENSMUSG00000006143.12 ENSMUSG00000006143 ENSMUST00000122979 Upk3bl protein_coding Interval_73683 chr17 42786069 42786277 + 0 NA Intergenic Intergenic -43994 ENSMUSG00000057899.7 ENSMUSG00000057899 ENSMUST00000113614 Adgrf2 protein_coding Interval_62672 chr15 96169928 96170249 + 0 NA intron (ENSMUSG00000097536.2, intron 5 of 6) lincRNA-intron (ENSMUSG00000097536.2, intron 5 of 6) 83899 ENSMUSG00000097619.8 ENSMUSG00000097619 ENSMUST00000229950 4833422M21Rik processed_transcript Interval_20422 chr10 117464276 117464544 + 0 NA Intergenic Intergenic -16917 ENSMUSG00000112344.1 ENSMUSG00000112344 ENSMUST00000220189 Gm32141 lincRNA Interval_44006 chr13 39181305 39181660 + 0 NA Intergenic Intergenic 220863 ENSMUSG00000096932.2 ENSMUSG00000096932 ENSMUST00000181376 5033403F01Rik antisense Interval_76590 chr17 82093480 82094296 + 0 NA Intergenic Intergenic 98721 ENSMUSG00000117507.1 ENSMUSG00000117507 ENSMUST00000234943 Gm50045 processed_pseudogene Interval_73886 chr17 45236425 45236688 + 0 NA Intergenic Intergenic 26590 ENSMUSG00000096425.1 ENSMUSG00000096425 ENSMUST00000178626 Gm24979 miRNA Interval_121505 chr4 156254390 156255745 + 0 NA promoter-TSS (ENSMUSG00000096351.2) protein_coding-promoter-TSS (ENSMUSG00000096351.2) 149 ENSMUSG00000096351.2 ENSMUSG00000096351 ENSMUST00000219310 Samd11 protein_coding Interval_48200 chr13 97143285 97143602 + 0 NA exon (ENSMUSG00000021666.16, exon 3 of 3) protein_coding-exon (ENSMUSG00000021666.16, exon 3 of 3) 5435 ENSMUSG00000021666.16 ENSMUSG00000021666 ENSMUST00000159321 Gfm2 protein_coding Interval_118798 chr4 133774458 133775754 + 0 NA Intergenic Intergenic 22613 ENSMUSG00000084555.1 ENSMUSG00000084555 ENSMUST00000122606 Gm25270 snRNA Interval_160167 chr8 106892266 106894258 + 0 NA promoter-TSS (ENSMUSG00000041438.8) protein_coding-promoter-TSS (ENSMUSG00000041438.8) 329 ENSMUSG00000117748.1 ENSMUSG00000117748 ENSMUST00000176437 Gm50241 protein_coding Interval_7983 chr1 135052960 135053320 + 0 NA intron (ENSMUSG00000042793.13, intron 4 of 17) protein_coding-intron (ENSMUSG00000042793.13, intron 4 of 17) -31049 ENSMUSG00000042793.13 ENSMUSG00000042793 ENSMUST00000139369 Lgr6 protein_coding Interval_85985 chr19 34661450 34662852 + 0 NA Intergenic Intergenic 21280 ENSMUSG00000034459.8 ENSMUSG00000034459 ENSMUST00000102824 Ifit1 protein_coding Interval_164579 chr9 39359341 39359633 + 0 NA Intergenic Intergenic -5074 ENSMUSG00000110780.1 ENSMUSG00000110780 ENSMUST00000215546 Olfr949-ps1 polymorphic_pseudogene Interval_102079 chr3 16652973 16653700 + 0 NA Intergenic Intergenic 169976 ENSMUSG00000088644.1 ENSMUSG00000088644 ENSMUST00000158019 Gm26485 snRNA Interval_139563 chr6 101153297 101154666 + 0 NA intron (ENSMUSG00000035357.17, intron 6 of 7) protein_coding-intron (ENSMUSG00000035357.17, intron 8 of 9) -7502 ENSMUSG00000107806.1 ENSMUSG00000107806 ENSMUST00000205008 Gm19726 processed_pseudogene Interval_86580 chr19 41858223 41858950 + 0 NA Intergenic Intergenic -10454 ENSMUSG00000047604.3 ENSMUSG00000047604 ENSMUST00000059231 Frat2 protein_coding Interval_32695 chr11 109704800 109705018 + 0 NA intron (ENSMUSG00000020614.13, intron 1 of 11) protein_coding-intron (ENSMUSG00000020614.13, intron 1 of 10) 17370 ENSMUSG00000020614.13 ENSMUSG00000020614 ENSMUST00000144972 Fam20a protein_coding Interval_161533 chr8 121030083 121030437 + 0 NA intron (ENSMUSG00000092329.1, intron 1 of 15) protein_coding-intron (ENSMUSG00000092329.1, intron 1 of 15) 27333 ENSMUSG00000101886.1 ENSMUSG00000101886 ENSMUST00000187913 Gm28324 lincRNA Interval_44311 chr13 43553957 43554454 + 0 NA intron (ENSMUSG00000021371.5, intron 2 of 5) protein_coding-intron (ENSMUSG00000021371.5, intron 2 of 8) 5986 ENSMUSG00000021371.5 ENSMUSG00000021371 ENSMUST00000223353 Mcur1 protein_coding Interval_131422 chr5 137085039 137086039 + 0 NA Intergenic Intergenic -13271 ENSMUSG00000037411.10 ENSMUSG00000037411 ENSMUST00000199832 Serpine1 protein_coding Interval_72181 chr17 28461103 28461371 + 0 NA promoter-TSS (ENSMUSG00000117294.1) TEC-promoter-TSS (ENSMUSG00000117294.1) -142 ENSMUSG00000117294.1 ENSMUSG00000117294 ENSMUST00000233091 Gm49839 TEC Interval_9343 chr1 156460015 156460347 + 0 NA intron (ENSMUSG00000026600.12, intron 1 of 6) protein_coding-intron (ENSMUSG00000026600.12, intron 1 of 14) 4891 ENSMUSG00000103199.1 ENSMUSG00000103199 ENSMUST00000192072 Gm37648 TEC Interval_155156 chr8 27113167 27113635 + 0 NA promoter-TSS (ENSMUSG00000031486.15) protein_coding-promoter-TSS (ENSMUSG00000031486.15) -3968 ENSMUSG00000031486.15 ENSMUSG00000031486 ENSMUST00000179351 Adgra2 protein_coding Interval_171606 chr9 119491766 119492531 + 0 NA exon (ENSMUSG00000032511.17, exon 24 of 27) protein_coding-exon (ENSMUSG00000032511.17, exon 24 of 27) 47172 ENSMUSG00000042787.15 ENSMUSG00000042787 ENSMUST00000214462 Exog protein_coding Interval_140845 chr6 122308321 122309287 + 0 NA promoter-TSS (ENSMUSG00000007458.14) protein_coding-promoter-TSS (ENSMUSG00000007458.14) -195 ENSMUSG00000007458.14 ENSMUSG00000007458 ENSMUST00000123093 M6pr protein_coding Interval_160598 chr8 110937332 110937507 + 0 NA intron (ENSMUSG00000031749.12, intron 1 of 1) protein_coding-intron (ENSMUSG00000031749.12, intron 1 of 6) 5498 ENSMUSG00000031749.12 ENSMUSG00000031749 ENSMUST00000138332 St3gal2 protein_coding Interval_172557 chrX 36760818 36761599 + 0 NA intron (ENSMUSG00000037636.6, intron 2 of 2) protein_coding-intron (ENSMUSG00000037636.6, intron 3 of 4) -15411 ENSMUSG00000064530.1 ENSMUSG00000064530 ENSMUST00000082596 Gm23613 snoRNA Interval_107213 chr3 104670001 104670943 + 0 NA promoter-TSS (ENSMUSG00000101641.1) TEC-promoter-TSS (ENSMUSG00000101641.1) -462 ENSMUSG00000101641.1 ENSMUSG00000101641 ENSMUST00000191526 Gm29560 TEC Interval_166529 chr9 60648959 60651000 + 0 NA promoter-TSS (ENSMUSG00000047766.15) protein_coding-promoter-TSS (ENSMUSG00000047766.15) 37555 ENSMUSG00000047766.15 ENSMUSG00000047766 ENSMUST00000132366 Lrrc49 protein_coding Interval_136159 chr6 51573654 51575911 + 0 NA intron (ENSMUSG00000038301.15, intron 2 of 6) protein_coding-intron (ENSMUSG00000038301.15, intron 2 of 6) 30259 ENSMUSG00000038301.15 ENSMUSG00000038301 ENSMUST00000149024 Snx10 protein_coding Interval_17229 chr10 75146466 75146863 + 0 NA intron (ENSMUSG00000009681.10, intron 8 of 22) protein_coding-intron (ENSMUSG00000009681.10, intron 8 of 22) -29712 ENSMUSG00000009681.10 ENSMUSG00000009681 ENSMUST00000219807 Bcr protein_coding Interval_42769 chr13 19264904 19265909 + 0 NA Intergenic Intergenic 4521 ENSMUSG00000091682.2 ENSMUSG00000091682 ENSMUST00000198163 Trgc3 TR_C_gene Interval_44910 chr13 49691525 49691808 + 0 NA intron (ENSMUSG00000037851.13, intron 6 of 33) protein_coding-intron (ENSMUSG00000037851.13, intron 6 of 33) 7365 ENSMUSG00000087963.1 ENSMUSG00000087963 ENSMUST00000157338 Gm25394 snoRNA Interval_40897 chr12 109255107 109255516 + 0 NA Intergenic Intergenic 64205 ENSMUSG00000092647.1 ENSMUSG00000092647 ENSMUST00000174906 Gm22234 miRNA Interval_20598 chr10 119287146 119288036 + 0 NA Intergenic Intergenic -32643 ENSMUSG00000112155.1 ENSMUSG00000112155 ENSMUST00000218762 4930477N07Rik lincRNA Interval_74164 chr17 46855770 46858856 + 0 NA intron (ENSMUSG00000036568.7, intron 1 of 4) protein_coding-intron (ENSMUSG00000036568.7, intron 1 of 4) -24999 ENSMUSG00000036568.7 ENSMUSG00000036568 ENSMUST00000233455 Bicral protein_coding Interval_31566 chr11 101410347 101411940 + 0 NA TTS (ENSMUSG00000075528.13) protein_coding-TTS (ENSMUSG00000075528.13) 3436 ENSMUSG00000075528.13 ENSMUSG00000075528 ENSMUST00000125472 Aarsd1 protein_coding Interval_96185 chr2 120372651 120372905 + 0 NA intron (ENSMUSG00000033808.16, intron 12 of 18) protein_coding-intron (ENSMUSG00000033808.16, intron 12 of 19) -19657 ENSMUSG00000027291.15 ENSMUSG00000027291 ENSMUST00000126526 Vps39 protein_coding Interval_24855 chr11 40468993 40469801 + 0 NA Intergenic Intergenic 6280 ENSMUSG00000085588.1 ENSMUSG00000085588 ENSMUST00000123904 3110004A20Rik lincRNA Interval_35383 chr12 21203342 21204882 + 0 NA intron (ENSMUSG00000052632.16, intron 6 of 27) protein_coding-intron (ENSMUSG00000052632.16, intron 6 of 26) 43211 ENSMUSG00000118655.1 ENSMUSG00000118655 ENSMUST00000172962 AC156032.1 processed_transcript Interval_132259 chr5 143685096 143685560 + 0 NA intron (ENSMUSG00000018001.18, intron 2 of 4) protein_coding-intron (ENSMUSG00000018001.18, intron 2 of 12) 42689 ENSMUSG00000051306.7 ENSMUSG00000051306 ENSMUST00000129606 Usp42 protein_coding Interval_29044 chr11 80034496 80037772 + 0 NA Intergenic Intergenic 43028 ENSMUSG00000017548.15 ENSMUSG00000017548 ENSMUST00000144188 Suz12 protein_coding Interval_168833 chr9 87755005 87756317 + 0 NA Intergenic Intergenic -14109 ENSMUSG00000102043.1 ENSMUSG00000102043 ENSMUST00000188409 Gm9541 processed_pseudogene Interval_39609 chr12 91538569 91538762 + 0 NA exon (ENSMUSG00000020963.15, exon 10 of 10) protein_coding-exon (ENSMUSG00000020963.15, exon 10 of 10) 34907 ENSMUSG00000080365.1 ENSMUSG00000080365 ENSMUST00000116715 Gm25776 snoRNA Interval_20840 chr10 121426667 121427679 + 0 NA intron (ENSMUSG00000112009.1, intron 1 of 1) protein_coding-intron (ENSMUSG00000025795.8, intron 1 of 4) 26460 ENSMUSG00000112209.1 ENSMUSG00000112209 ENSMUST00000218038 Gm18730 processed_pseudogene Interval_137701 chr6 80459171 80459412 + 0 NA intron (ENSMUSG00000052581.13, intron 2 of 2) protein_coding-intron (ENSMUSG00000052581.13, intron 3 of 3) 13941 ENSMUSG00000108088.1 ENSMUSG00000108088 ENSMUST00000203211 Gm44229 TEC Interval_5693 chr1 90969237 90970176 + 0 NA promoter-TSS (ENSMUSG00000026304.13) protein_coding-promoter-TSS (ENSMUSG00000026304.13) -2089 ENSMUSG00000026304.13 ENSMUSG00000026304 ENSMUST00000130042 Rab17 protein_coding Interval_150872 chr7 116086213 116086615 + 0 NA intron (ENSMUSG00000087621.7, intron 2 of 2) processed_transcript-intron (ENSMUSG00000087621.7, intron 3 of 3) -1856 ENSMUSG00000091900.3 ENSMUSG00000091900 ENSMUST00000111755 Gm4353 processed_pseudogene Interval_115379 chr4 98379553 98379771 + 0 NA intron (ENSMUSG00000028563.16, intron 1 of 5) protein_coding-intron (ENSMUSG00000028563.16, intron 2 of 6) 3570 ENSMUSG00000028563.16 ENSMUSG00000028563 ENSMUST00000143116 Tm2d1 protein_coding Interval_63007 chr15 98622680 98623797 + 0 NA Intergenic Intergenic -8567 ENSMUSG00000003352.14 ENSMUSG00000003352 ENSMUST00000230064 Cacnb3 protein_coding Interval_88703 chr2 9878173 9879877 + 0 NA promoter-TSS (ENSMUSG00000015619.10) protein_coding-promoter-TSS (ENSMUSG00000015619.10) 1769 ENSMUSG00000086618.1 ENSMUSG00000086618 ENSMUST00000131297 Gm13256 antisense Interval_161626 chr8 121651680 121653968 + 0 NA promoter-TSS (ENSMUSG00000061410.6) protein_coding-promoter-TSS (ENSMUSG00000061410.6) -1230 ENSMUSG00000098221.1 ENSMUSG00000098221 ENSMUST00000182551 Gm27030 lincRNA Interval_28077 chr11 72675024 72675707 + 0 NA intron (ENSMUSG00000020794.13, intron 4 of 6) protein_coding-intron (ENSMUSG00000020794.13, intron 3 of 5) -14641 ENSMUSG00000020790.14 ENSMUSG00000020790 ENSMUST00000132889 Ankfy1 protein_coding Interval_27720 chr11 69665608 69666682 + 0 NA promoter-TSS (ENSMUSG00000018774.13) protein_coding-promoter-TSS (ENSMUSG00000018774.13) -83 ENSMUSG00000018774.13 ENSMUSG00000018774 ENSMUST00000108654 Cd68 protein_coding Interval_8085 chr1 135637606 135639801 + 0 NA intron (ENSMUSG00000009418.16, intron 1 of 30) protein_coding-intron (ENSMUSG00000009418.16, intron 1 of 1) 53930 ENSMUSG00000054412.5 ENSMUSG00000054412 ENSMUST00000067468 Gm4793 antisense Interval_81201 chr18 56377983 56378845 + 0 NA Intergenic Intergenic -11729 ENSMUSG00000117688.1 ENSMUSG00000117688 ENSMUST00000235993 Gm8629 processed_pseudogene Interval_17918 chr10 80826071 80827113 + 0 NA promoter-TSS (ENSMUSG00000035242.15) protein_coding-promoter-TSS (ENSMUSG00000035242.15) -94 ENSMUSG00000035242.15 ENSMUSG00000035242 ENSMUST00000179341 Oaz1 protein_coding Interval_49520 chr13 112671362 112672276 + 0 NA intron (ENSMUSG00000047789.5, intron 2 of 14) protein_coding-intron (ENSMUSG00000047789.5, intron 2 of 14) 13877 ENSMUSG00000114438.1 ENSMUSG00000114438 ENSMUST00000224584 Gm47827 antisense Interval_140178 chr6 115022639 115023705 + 0 NA intron (ENSMUSG00000030316.13, intron 2 of 4) protein_coding-intron (ENSMUSG00000030316.13, intron 4 of 7) 14683 ENSMUSG00000030316.13 ENSMUSG00000030316 ENSMUST00000144445 Tamm41 protein_coding Interval_85923 chr19 33267295 33268493 + 0 NA intron (ENSMUSG00000071573.14, intron 2 of 4) polymorphic_pseudogene-intron (ENSMUSG00000071573.14, intron 4 of 6) 110782 ENSMUSG00000106278.1 ENSMUSG00000106278 ENSMUST00000199287 Mir3970 miRNA Interval_75303 chr17 65782449 65784022 + 0 NA promoter-TSS (ENSMUSG00000061950.17) protein_coding-promoter-TSS (ENSMUSG00000061950.17) -10595 ENSMUSG00000056515.9 ENSMUSG00000056515 ENSMUST00000233258 Rab31 protein_coding Interval_137168 chr6 68852081 68853552 + 0 NA Intergenic Intergenic 10215 ENSMUSG00000076535.1 ENSMUSG00000076535 ENSMUST00000103336 Igkv1-88 IG_V_gene Interval_16566 chr10 63886373 63887013 + 0 NA intron (ENSMUSG00000060843.11, intron 7 of 17) protein_coding-intron (ENSMUSG00000060843.11, intron 6 of 16) 40741 ENSMUSG00000062561.3 ENSMUSG00000062561 ENSMUST00000079279 Gm10118 TEC Interval_55217 chr14 79403337 79403753 + 0 NA intron (ENSMUSG00000022022.3, intron 4 of 9) protein_coding-intron (ENSMUSG00000022022.3, intron 4 of 10) 5559 ENSMUSG00000022022.3 ENSMUSG00000022022 ENSMUST00000227610 Mtrf1 protein_coding Interval_15786 chr10 56551114 56551398 + 0 NA Intergenic Intergenic 53915 ENSMUSG00000112825.1 ENSMUSG00000112825 ENSMUST00000219246 Gm9118 processed_pseudogene Interval_143137 chr7 3606756 3607646 + 0 NA Intergenic Intergenic -3051 ENSMUSG00000108644.1 ENSMUSG00000108644 ENSMUST00000206503 Gm44920 lincRNA Interval_11652 chr1 183985096 183985291 + 0 NA Intergenic Intergenic -28109 ENSMUSG00000039384.8 ENSMUSG00000039384 ENSMUST00000048655 Dusp10 protein_coding Interval_92703 chr2 63250120 63250315 + 0 NA Intergenic Intergenic -65955 ENSMUSG00000059742.10 ENSMUSG00000059742 ENSMUST00000131799 Kcnh7 protein_coding Interval_54229 chr14 66591027 66591225 + 0 NA TTS (ENSMUSG00000088737.1) rRNA-TTS (ENSMUSG00000088737.1) 569 ENSMUSG00000088737.1 ENSMUSG00000088737 ENSMUST00000158112 Gm23899 rRNA Interval_66658 chr16 35903945 35905211 + 0 NA Intergenic Intergenic 13164 ENSMUSG00000116728.1 ENSMUSG00000116728 ENSMUST00000232076 Gm41467 processed_pseudogene Interval_107020 chr3 103005824 103006731 + 0 NA exon (ENSMUSG00000027854.12, exon 5 of 5) protein_coding-exon (ENSMUSG00000027854.12, exon 5 of 5) 10101 ENSMUSG00000027854.12 ENSMUSG00000027854 ENSMUST00000196827 Sike1 protein_coding Interval_123339 chr5 31570995 31571947 + 0 NA promoter-TSS (ENSMUSG00000107355.1) lincRNA-promoter-TSS (ENSMUSG00000107355.1) -74 ENSMUSG00000107355.1 ENSMUSG00000107355 ENSMUST00000200738 AI839979 lincRNA Interval_162454 chr8 128947789 128947970 + 0 NA intron (ENSMUSG00000025808.17, intron 18 of 55) protein_coding-intron (ENSMUSG00000025808.17, intron 18 of 55) -70011 ENSMUSG00000077538.1 ENSMUSG00000077538 ENSMUST00000104350 Gm22545 snoRNA Interval_69628 chr16 94718260 94718832 + 0 NA Intergenic Intergenic -3348 ENSMUSG00000116641.1 ENSMUSG00000116641 ENSMUST00000232585 Gm41505 antisense Interval_94334 chr2 89502073 89502332 + 0 NA Intergenic Intergenic -3989 ENSMUSG00000075085.6 ENSMUSG00000075085 ENSMUST00000099777 Olfr1242 protein_coding Interval_77726 chr17 94719587 94720207 + 0 NA Intergenic Intergenic 27008 ENSMUSG00000117586.1 ENSMUSG00000117586 ENSMUST00000234452 Gm50006 processed_pseudogene Interval_130381 chr5 127188676 127188966 + 0 NA Intergenic Intergenic 12276 ENSMUSG00000104778.1 ENSMUSG00000104778 ENSMUST00000197873 Gm43476 lincRNA Interval_8115 chr1 135802182 135802791 + 0 NA intron (ENSMUSG00000026418.16, intron 2 of 6) protein_coding-intron (ENSMUSG00000026418.16, intron 3 of 6) 23052 ENSMUSG00000026418.16 ENSMUSG00000026418 ENSMUST00000129217 Tnni1 protein_coding Interval_73163 chr17 35195434 35196486 + 0 NA TTS (ENSMUSG00000098291.1) miRNA-TTS (ENSMUSG00000098291.1) 988 ENSMUSG00000098291.1 ENSMUSG00000098291 ENSMUST00000183646 Mir6973a miRNA Interval_92744 chr2 65021992 65023264 + 0 NA TTS (ENSMUSG00000026888.14) protein_coding-TTS (ENSMUSG00000026888.14) -46859 ENSMUSG00000026888.14 ENSMUSG00000026888 ENSMUST00000146807 Grb14 protein_coding Interval_51308 chr14 26303086 26303302 + 0 NA exon (ENSMUSG00000114921.1, exon 1 of 1) processed_pseudogene-exon (ENSMUSG00000114921.1, exon 1 of 1) 489 ENSMUSG00000114921.1 ENSMUSG00000114921 ENSMUST00000223947 Gm18578 processed_pseudogene Interval_73540 chr17 40115242 40117508 + 0 NA TTS (ENSMUSG00000045842.9) transcribed_processed_pseudogene-TTS (ENSMUSG00000045842.9) 900 ENSMUSG00000045842.9 ENSMUSG00000045842 ENSMUST00000233313 Tgif2-ps2 transcribed_processed_pseudogene Interval_150204 chr7 108012853 108015067 + 0 NA Intergenic Intergenic -5056 ENSMUSG00000108844.1 ENSMUSG00000108844 ENSMUST00000208496 Gm6702 processed_pseudogene Interval_87541 chr19 53340398 53340947 + 0 NA intron (ENSMUSG00000025025.14, intron 2 of 4) protein_coding-intron (ENSMUSG00000025025.14, intron 2 of 5) 11211 ENSMUSG00000025025.14 ENSMUSG00000025025 ENSMUST00000237295 Mxi1 protein_coding Interval_111580 chr4 23879350 23879553 + 0 NA Intergenic Intergenic 54503 ENSMUSG00000100395.1 ENSMUSG00000100395 ENSMUST00000188547 Gm28448 lincRNA Interval_168972 chr9 89867938 89869263 + 0 NA Intergenic Intergenic -41312 ENSMUSG00000032356.12 ENSMUSG00000032356 ENSMUST00000190073 Rasgrf1 protein_coding Interval_17003 chr10 70373663 70374944 + 0 NA Intergenic Intergenic 36001 ENSMUSG00000112676.1 ENSMUSG00000112676 ENSMUST00000219977 Gm20108 processed_pseudogene Interval_164046 chr9 31117282 31120532 + 0 NA intron (ENSMUSG00000031995.9, intron 1 of 8) protein_coding-intron (ENSMUSG00000031995.9, intron 1 of 18) -15369 ENSMUSG00000031995.9 ENSMUSG00000031995 ENSMUST00000123557 St14 protein_coding Interval_173729 chrX 103216603 103216894 + 0 NA intron (ENSMUSG00000031325.15, intron 5 of 5) transcribed_unitary_pseudogene-intron (ENSMUSG00000031325.15, intron 5 of 5) -10957 ENSMUSG00000083763.1 ENSMUSG00000083763 ENSMUST00000119501 Gm9050 processed_pseudogene Interval_60340 chr15 73020978 73021733 + 0 NA intron (ENSMUSG00000047921.17, intron 6 of 16) protein_coding-intron (ENSMUSG00000047921.17, intron 6 of 21) 39690 ENSMUSG00000047921.17 ENSMUSG00000047921 ENSMUST00000228960 Trappc9 protein_coding Interval_100071 chr2 166921460 166922948 + 0 NA exon (ENSMUSG00000002718.14, exon 5 of 25) protein_coding-exon (ENSMUSG00000002718.14, exon 5 of 25) 16164 ENSMUSG00000002718.14 ENSMUSG00000002718 ENSMUST00000129061 Cse1l protein_coding Interval_36498 chr12 46608343 46608600 + 0 NA Intergenic Intergenic 57238 ENSMUSG00000112174.1 ENSMUSG00000112174 ENSMUST00000217951 Gm48535 lincRNA Interval_89613 chr2 23234418 23234771 + 0 NA promoter-TSS (ENSMUSG00000084098.1) processed_pseudogene-promoter-TSS (ENSMUSG00000084098.1) -642 ENSMUSG00000084098.1 ENSMUSG00000084098 ENSMUST00000118834 Gm13422 processed_pseudogene Interval_174589 chrX 159526541 159526901 + 0 NA promoter-TSS (ENSMUSG00000044150.12) protein_coding-promoter-TSS (ENSMUSG00000044150.12) -40817 ENSMUSG00000044150.12 ENSMUSG00000044150 ENSMUST00000154694 Bclaf3 protein_coding Interval_100181 chr2 167506629 167507141 + 0 NA intron (ENSMUSG00000006418.17, intron 1 of 4) protein_coding-intron (ENSMUSG00000006418.17, intron 1 of 5) 3439 ENSMUSG00000006418.17 ENSMUSG00000006418 ENSMUST00000127939 Rnf114 protein_coding Interval_143211 chr7 4515978 4516884 + 0 NA promoter-TSS (ENSMUSG00000064179.13) protein_coding-promoter-TSS (ENSMUSG00000064179.13) -456 ENSMUSG00000064179.13 ENSMUSG00000064179 ENSMUST00000163560 Tnnt1 protein_coding Interval_1126 chr1 15862216 15862585 + 0 NA intron (ENSMUSG00000032719.4, intron 2 of 4) protein_coding-intron (ENSMUSG00000032719.4, intron 2 of 4) 9069 ENSMUSG00000104379.1 ENSMUSG00000104379 ENSMUST00000194867 Gm37509 TEC Interval_141736 chr6 134131498 134131973 + 0 NA intron (ENSMUSG00000030199.16, intron 2 of 8) protein_coding-intron (ENSMUSG00000030199.16, intron 1 of 7) 40272 ENSMUSG00000091438.1 ENSMUSG00000091438 ENSMUST00000164616 Gm17088 antisense Interval_22933 chr11 17560339 17560817 + 0 NA Intergenic Intergenic 12292 ENSMUSG00000087833.1 ENSMUSG00000087833 ENSMUST00000157208 Gm23959 misc_RNA Interval_122408 chr5 22296869 22297151 + 0 NA intron (ENSMUSG00000042453.14, intron 1 of 7) protein_coding-intron (ENSMUSG00000042453.14, intron 1 of 63) 4223 ENSMUSG00000089793.1 ENSMUSG00000089793 ENSMUST00000159075 Gm16112 processed_pseudogene Interval_91793 chr2 49638833 49640457 + 0 NA intron (ENSMUSG00000026764.15, intron 1 of 25) protein_coding-intron (ENSMUSG00000026764.15, intron 1 of 25) -40854 ENSMUSG00000082879.1 ENSMUSG00000082879 ENSMUST00000120607 Gm13525 processed_pseudogene Interval_44618 chr13 46751944 46753445 + 0 NA promoter-TSS (ENSMUSG00000021375.11) protein_coding-promoter-TSS (ENSMUSG00000021375.11) 14955 ENSMUSG00000064558.1 ENSMUSG00000064558 ENSMUST00000082624 Gm24620 snoRNA Interval_125309 chr5 66121311 66122445 + 0 NA intron (ENSMUSG00000070780.11, intron 1 of 2) protein_coding-intron (ENSMUSG00000070780.11, intron 1 of 5) 29078 ENSMUSG00000070780.11 ENSMUSG00000070780 ENSMUST00000201670 Rbm47 protein_coding Interval_23137 chr11 20127092 20127470 + 0 NA Intergenic Intergenic -14372 ENSMUSG00000020152.7 ENSMUSG00000020152 ENSMUST00000134779 Actr2 protein_coding Interval_51908 chr14 33722332 33723005 + 0 NA Intergenic Intergenic 78173 ENSMUSG00000064446.1 ENSMUSG00000064446 ENSMUST00000082512 Gm26228 snRNA Interval_153725 chr8 5384686 5385428 + 0 NA Intergenic Intergenic -51944 ENSMUSG00000064507.1 ENSMUSG00000064507 ENSMUST00000082573 n-R5s94 rRNA Interval_113925 chr4 59883946 59884148 + 0 NA promoter-TSS (ENSMUSG00000028385.14) protein_coding-promoter-TSS (ENSMUSG00000028385.14) -647 ENSMUSG00000028385.14 ENSMUSG00000028385 ENSMUST00000143185 Snx30 protein_coding Interval_76699 chr17 83568146 83569072 + 0 NA Intergenic Intergenic 63286 ENSMUSG00000045053.2 ENSMUSG00000045053 ENSMUST00000051482 Kcng3 protein_coding Interval_29386 chr11 83566911 83568072 + 0 NA Intergenic Intergenic 9651 ENSMUSG00000019122.8 ENSMUSG00000019122 ENSMUST00000136131 Ccl9 protein_coding Interval_103255 chr3 37558886 37559135 + 0 NA intron (ENSMUSG00000027722.14, intron 16 of 16) protein_coding-intron (ENSMUSG00000027722.14, intron 15 of 15) -2507 ENSMUSG00000080723.1 ENSMUSG00000080723 ENSMUST00000119860 Gm12564 processed_pseudogene Interval_146072 chr7 43668752 43668978 + 0 NA Intergenic Intergenic 2449 ENSMUSG00000108783.1 ENSMUSG00000108783 ENSMUST00000206372 Gm36546 lincRNA Interval_49648 chr13 113793652 113795531 + 0 NA promoter-TSS (ENSMUSG00000042348.10) protein_coding-promoter-TSS (ENSMUSG00000042348.10) -2 ENSMUSG00000042348.10 ENSMUSG00000042348 ENSMUST00000224068 Arl15 protein_coding Interval_51504 chr14 28848689 28849822 + 0 NA Intergenic Intergenic -50834 ENSMUSG00000114577.1 ENSMUSG00000114577 ENSMUST00000225272 Gm35217 lincRNA Interval_13248 chr10 13566312 13566794 + 0 NA Intergenic Intergenic -13411 ENSMUSG00000019809.16 ENSMUSG00000019809 ENSMUST00000145337 Pex3 protein_coding Interval_117570 chr4 124714335 124715353 + 0 NA promoter-TSS (ENSMUSG00000028902.4) protein_coding-promoter-TSS (ENSMUSG00000028902.4) -39 ENSMUSG00000028902.4 ENSMUSG00000028902 ENSMUST00000151049 Sf3a3 protein_coding Interval_70203 chr17 6180764 6181016 + 0 NA intron (ENSMUSG00000034377.10, intron 2 of 13) protein_coding-intron (ENSMUSG00000034377.10, intron 2 of 13) 33471 ENSMUSG00000077789.1 ENSMUSG00000077789 ENSMUST00000104601 n-R5s26 rRNA Interval_149164 chr7 95664618 95664826 + 0 NA Intergenic Intergenic 189776 ENSMUSG00000108429.1 ENSMUSG00000108429 ENSMUST00000206820 Gm44603 processed_pseudogene Interval_158328 chr8 81370799 81371102 + 0 NA intron (ENSMUSG00000037940.17, intron 1 of 24) protein_coding-intron (ENSMUSG00000037940.17, intron 1 of 23) 28388 ENSMUSG00000037940.17 ENSMUSG00000037940 ENSMUST00000165821 Inpp4b protein_coding Interval_35693 chr12 27846965 27847783 + 0 NA Intergenic Intergenic -133223 ENSMUSG00000113616.1 ENSMUSG00000113616 ENSMUST00000223144 Gm45941 lincRNA Interval_10793 chr1 174951681 174951879 + 0 NA Intergenic Intergenic -29961 ENSMUSG00000050069.3 ENSMUSG00000050069 ENSMUST00000055294 Grem2 protein_coding Interval_69606 chr16 94581003 94581300 + 0 NA intron (ENSMUSG00000022897.15, intron 1 of 5) protein_coding-intron (ENSMUSG00000022897.15, intron 1 of 11) 10244 ENSMUSG00000022897.15 ENSMUSG00000022897 ENSMUST00000134383 Dyrk1a protein_coding Interval_29988 chr11 88556163 88558362 + 0 NA intron (ENSMUSG00000069769.13, intron 1 of 5) protein_coding-intron (ENSMUSG00000069769.13, intron 6 of 13) 32885 ENSMUSG00000069769.13 ENSMUSG00000069769 ENSMUST00000126293 Msi2 protein_coding Interval_135423 chr6 39295142 39296987 + 0 NA Intergenic Intergenic -30122 ENSMUSG00000089422.1 ENSMUSG00000089422 ENSMUST00000158797 Gm26008 snRNA Interval_14083 chr10 26694946 26695804 + 0 NA promoter-TSS (ENSMUSG00000111950.1) lincRNA-promoter-TSS (ENSMUSG00000111950.1) -199 ENSMUSG00000111950.1 ENSMUSG00000111950 ENSMUST00000218733 Gm48893 lincRNA Interval_56707 chr14 121504962 121507116 + 0 NA promoter-TSS (ENSMUSG00000025557.10) protein_coding-promoter-TSS (ENSMUSG00000025557.10) 13091 ENSMUSG00000115390.1 ENSMUSG00000115390 ENSMUST00000226732 Gm49035 lincRNA Interval_21324 chr10 127968099 127969116 + 0 NA Intergenic Intergenic 7051 ENSMUSG00000112446.1 ENSMUSG00000112446 ENSMUST00000218406 Gm47949 processed_pseudogene Interval_62158 chr15 88374197 88374397 + 0 NA Intergenic Intergenic -58665 ENSMUSG00000115880.1 ENSMUSG00000115880 ENSMUST00000230151 4930445N06Rik lincRNA Interval_13261 chr10 13692555 13693287 + 0 NA intron (ENSMUSG00000019806.13, intron 3 of 5) protein_coding-intron (ENSMUSG00000019806.13, intron 3 of 5) 65723 ENSMUSG00000112055.1 ENSMUSG00000112055 ENSMUST00000219684 Gm48773 lincRNA Interval_40330 chr12 103765472 103765673 + 0 NA intron (ENSMUSG00000071177.4, intron 3 of 4) protein_coding-intron (ENSMUSG00000071177.4, intron 3 of 4) 8020 ENSMUSG00000071177.4 ENSMUSG00000071177 ENSMUST00000078869 Serpina1d protein_coding Interval_174213 chrX 139812576 139813459 + 0 NA Intergenic Intergenic 10230 ENSMUSG00000047230.6 ENSMUSG00000047230 ENSMUST00000135224 Cldn2 protein_coding Interval_58387 chr15 34069182 34069714 + 0 NA Intergenic Intergenic 16330 ENSMUSG00000115440.1 ENSMUSG00000115440 ENSMUST00000227515 Gm49091 processed_pseudogene Interval_4126 chr1 69731366 69732214 + 0 NA Intergenic Intergenic -39078 ENSMUSG00000103402.1 ENSMUSG00000103402 ENSMUST00000194308 Gm37930 TEC Interval_133025 chr5 149362862 149364613 + 0 NA Intergenic Intergenic -4739 ENSMUSG00000107314.1 ENSMUSG00000107314 ENSMUST00000201641 Gm20488 processed_transcript Interval_147089 chr7 62418622 62420455 + 0 NA exon (ENSMUSG00000070527.3, exon 1 of 1) protein_coding-exon (ENSMUSG00000070527.3, exon 1 of 1) 601 ENSMUSG00000070527.3 ENSMUSG00000070527 ENSMUST00000094340 Mkrn3 protein_coding Interval_28516 chr11 76446220 76448010 + 0 NA intron (ENSMUSG00000017631.19, intron 16 of 22) protein_coding-intron (ENSMUSG00000017631.19, intron 11 of 17) 39910 ENSMUSG00000020843.15 ENSMUSG00000020843 ENSMUST00000164102 Timm22 protein_coding Interval_141114 chr6 125071141 125072228 + 0 NA intron (ENSMUSG00000067714.13, intron 1 of 1) protein_coding-intron (ENSMUSG00000067714.13, intron 1 of 1) 407 ENSMUSG00000067714.13 ENSMUSG00000067714 ENSMUST00000171989 Lpar5 protein_coding Interval_94301 chr2 87711772 87711956 + 0 NA promoter-TSS (ENSMUSG00000075150.2) protein_coding-promoter-TSS (ENSMUSG00000075150.2) 1315 ENSMUSG00000075150.2 ENSMUSG00000075150 ENSMUST00000099850 Olfr1137 protein_coding Interval_160539 chr8 110502432 110502840 + 0 NA intron (ENSMUSG00000059854.8, intron 30 of 86) protein_coding-intron (ENSMUSG00000059854.8, intron 30 of 86) 3651 ENSMUSG00000105131.1 ENSMUSG00000105131 ENSMUST00000197243 Gm47306 miRNA Interval_52724 chr14 49065770 49066970 + 0 NA promoter-TSS (ENSMUSG00000036291.6) protein_coding-promoter-TSS (ENSMUSG00000036291.6) -126 ENSMUSG00000036291.6 ENSMUSG00000036291 ENSMUST00000226695 Ap5m1 protein_coding Interval_15914 chr10 59261443 59261896 + 0 NA Intergenic Intergenic 39716 ENSMUSG00000098188.1 ENSMUSG00000098188 ENSMUST00000182161 Sowahc protein_coding Interval_69090 chr16 90557383 90557603 + 0 NA Intergenic Intergenic 3329 ENSMUSG00000046119.2 ENSMUSG00000046119 ENSMUST00000183621 1110008E08Rik lincRNA Interval_166677 chr9 61859735 61860677 + 0 NA Intergenic Intergenic 8502 ENSMUSG00000110968.1 ENSMUSG00000110968 ENSMUST00000213861 Gm19208 processed_pseudogene Interval_170251 chr9 106471579 106472212 + 0 NA exon (ENSMUSG00000023249.15, exon 10 of 11) protein_coding-exon (ENSMUSG00000023249.15, exon 10 of 11) 4715 ENSMUSG00000023249.15 ENSMUSG00000023249 ENSMUST00000125850 Parp3 protein_coding Interval_95829 chr2 117017972 117019734 + 0 NA Intergenic Intergenic -36713 ENSMUSG00000074930.5 ENSMUSG00000074930 ENSMUST00000122360 Gm13981 processed_pseudogene Interval_34807 chr12 11391340 11392064 + 0 NA intron (ENSMUSG00000054459.8, intron 1 of 3) protein_coding-intron (ENSMUSG00000054459.8, intron 1 of 3) 43938 ENSMUSG00000054459.8 ENSMUSG00000054459 ENSMUST00000072299 Vsnl1 protein_coding Interval_88926 chr2 13020602 13020970 + 0 NA Intergenic Intergenic 8162 ENSMUSG00000103599.1 ENSMUSG00000103599 ENSMUST00000193362 Gm37356 TEC Interval_38222 chr12 76451436 76452285 + 0 NA TTS (ENSMUSG00000073000.3) lincRNA-TTS (ENSMUSG00000073000.3) 2162 ENSMUSG00000073000.3 ENSMUSG00000073000 ENSMUST00000220043 Gm10451 lincRNA Interval_7108 chr1 126007963 126008258 + 0 NA intron (ENSMUSG00000049690.15, intron 9 of 10) protein_coding-intron (ENSMUSG00000049690.15, intron 10 of 12) 63351 ENSMUSG00000102723.1 ENSMUSG00000102723 ENSMUST00000194647 Gm37936 TEC Interval_115442 chr4 98961225 98962431 + 0 NA intron (ENSMUSG00000028556.15, intron 37 of 47) protein_coding-intron (ENSMUSG00000028556.15, intron 38 of 48) 37864 ENSMUSG00000028560.11 ENSMUSG00000028560 ENSMUST00000125104 Usp1 protein_coding Interval_8952 chr1 152677990 152678854 + 0 NA intron (ENSMUSG00000026482.13, intron 1 of 18) protein_coding-intron (ENSMUSG00000026482.13, intron 1 of 17) 9079 ENSMUSG00000086145.1 ENSMUSG00000086145 ENSMUST00000139309 Gm15479 sense_intronic Interval_106153 chr3 93716920 93718210 + 0 NA Intergenic Intergenic 7486 ENSMUSG00000102511.1 ENSMUSG00000102511 ENSMUST00000193543 Gm38086 unprocessed_pseudogene Interval_7525 chr1 131994636 131995335 + 0 NA intron (ENSMUSG00000100037.1, intron 2 of 2) processed_transcript-intron (ENSMUSG00000100037.1, intron 2 of 2) 18266 ENSMUSG00000026435.15 ENSMUSG00000026435 ENSMUST00000185387 Slc45a3 protein_coding Interval_4300 chr1 72547911 72548525 + 0 NA Intergenic Intergenic -11288 ENSMUSG00000039372.5 ENSMUSG00000039372 ENSMUST00000047786 Marchf4 protein_coding Interval_142608 chr6 144247850 144248178 + 0 NA intron (ENSMUSG00000041540.16, intron 4 of 6) protein_coding-intron (ENSMUSG00000041540.16, intron 4 of 13) -38446 ENSMUSG00000041540.16 ENSMUSG00000041540 ENSMUST00000150087 Sox5 protein_coding Interval_160369 chr8 108786600 108787104 + 0 NA intron (ENSMUSG00000038872.10, intron 1 of 9) protein_coding-intron (ENSMUSG00000038872.10, intron 1 of 9) 49259 ENSMUSG00000104292.1 ENSMUSG00000104292 ENSMUST00000191614 Gm38042 TEC Interval_91168 chr2 35635621 35635960 + 0 NA intron (ENSMUSG00000026883.17, intron 1 of 15) protein_coding-intron (ENSMUSG00000026883.17, intron 1 of 15) -74537 ENSMUSG00000026883.17 ENSMUSG00000026883 ENSMUST00000156669 Dab2ip protein_coding Interval_121667 chr5 4844523 4845450 + 0 NA intron (ENSMUSG00000028926.15, intron 13 of 13) protein_coding-intron (ENSMUSG00000028926.15, intron 14 of 14) 9437 ENSMUSG00000093159.1 ENSMUSG00000093159 ENSMUST00000175418 Gm25037 miRNA Interval_79977 chr18 36400441 36400839 + 0 NA intron (ENSMUSG00000046727.13, intron 4 of 4) protein_coding-intron (ENSMUSG00000046727.13, intron 2 of 2) 53884 ENSMUSG00000024346.6 ENSMUSG00000024346 ENSMUST00000237499 Pfdn1 protein_coding Interval_6346 chr1 106139575 106139796 + 0 NA Intergenic Intergenic 31839 ENSMUSG00000101583.1 ENSMUSG00000101583 ENSMUST00000190105 Gm20753 lincRNA Interval_79835 chr18 35472028 35472996 + 0 NA intron (ENSMUSG00000024357.10, intron 1 of 2) protein_coding-intron (ENSMUSG00000024357.10, intron 1 of 9) -16592 ENSMUSG00000117731.1 ENSMUSG00000117731 ENSMUST00000237123 Gm50145 antisense Interval_2464 chr1 39535405 39536383 + 0 NA promoter-TSS (ENSMUSG00000003135.15) protein_coding-promoter-TSS (ENSMUSG00000003135.15) -4140 ENSMUSG00000003135.15 ENSMUSG00000003135 ENSMUST00000195567 Cnot11 protein_coding Interval_1286 chr1 19209084 19210894 + 0 NA intron (ENSMUSG00000025927.13, intron 1 of 7) protein_coding-intron (ENSMUSG00000025927.13, intron 1 of 6) -2317 ENSMUSG00000025927.13 ENSMUSG00000025927 ENSMUST00000186972 Tfap2b protein_coding Interval_53992 chr14 64159933 64160155 + 0 NA intron (ENSMUSG00000054733.9, intron 5 of 5) protein_coding-intron (ENSMUSG00000054733.9, intron 10 of 10) 43730 ENSMUSG00000114284.1 ENSMUSG00000114284 ENSMUST00000225122 9630015K15Rik antisense Interval_143913 chr7 17155485 17155987 + 0 NA intron (ENSMUSG00000053228.12, intron 3 of 6) protein_coding-intron (ENSMUSG00000053228.12, intron 3 of 6) 5454 ENSMUSG00000053228.12 ENSMUSG00000053228 ENSMUST00000108491 Ceacam3 protein_coding Interval_67216 chr16 44501347 44502126 + 0 NA exon (ENSMUSG00000022687.12, exon 5 of 19) protein_coding-exon (ENSMUSG00000022687.12, exon 5 of 19) 56393 ENSMUSG00000093046.1 ENSMUSG00000093046 ENSMUST00000175305 Mir3081 miRNA Interval_8764 chr1 150653037 150653311 + 0 NA intron (ENSMUSG00000066842.18, intron 63 of 105) protein_coding-intron (ENSMUSG00000066842.18, intron 63 of 106) 27875 ENSMUSG00000093650.2 ENSMUSG00000093650 ENSMUST00000177268 Gm20631 antisense Interval_39064 chr12 84772548 84773726 + 0 NA promoter-TSS (ENSMUSG00000021241.7) protein_coding-promoter-TSS (ENSMUSG00000021241.7) -154 ENSMUSG00000021241.7 ENSMUSG00000021241 ENSMUST00000220726 Isca2 protein_coding Interval_23615 chr11 23818974 23819721 + 0 NA Intergenic Intergenic -42300 ENSMUSG00000087741.1 ENSMUSG00000087741 ENSMUST00000157116 Gm23827 snRNA Interval_65929 chr16 30299774 30300092 + 0 NA Intergenic Intergenic 10846 ENSMUSG00000047953.7 ENSMUSG00000047953 ENSMUST00000061190 Gp5 protein_coding Interval_103376 chr3 41019566 41019792 + 0 NA intron (ENSMUSG00000025762.16, intron 1 of 6) protein_coding-intron (ENSMUSG00000025762.16, intron 1 of 6) -13242 ENSMUSG00000105674.1 ENSMUSG00000105674 ENSMUST00000197263 Gm42437 TEC Interval_70615 chr17 12354395 12354597 + 0 NA Intergenic Intergenic -1986 ENSMUSG00000117197.1 ENSMUSG00000117197 ENSMUST00000232948 Gm6618 processed_pseudogene Interval_2259 chr1 37457246 37457786 + 0 NA intron (ENSMUSG00000026110.15, intron 7 of 14) protein_coding-intron (ENSMUSG00000026110.15, intron 7 of 14) 27330 ENSMUSG00000026111.15 ENSMUSG00000026111 ENSMUST00000134184 Unc50 protein_coding Interval_48748 chr13 102708356 102709618 + 0 NA intron (ENSMUSG00000021624.9, intron 2 of 2) protein_coding-intron (ENSMUSG00000021624.9, intron 2 of 2) 15376 ENSMUSG00000021624.9 ENSMUSG00000021624 ENSMUST00000172138 Cd180 protein_coding Interval_168420 chr9 80179316 80179995 + 0 NA intron (ENSMUSG00000033577.18, intron 1 of 35) protein_coding-intron (ENSMUSG00000033577.18, intron 1 of 32) 14428 ENSMUSG00000033577.18 ENSMUSG00000033577 ENSMUST00000138650 Myo6 protein_coding Interval_125355 chr5 66390612 66391951 + 0 NA intron (ENSMUSG00000029207.16, intron 5 of 12) protein_coding-intron (ENSMUSG00000029207.16, intron 9 of 17) 34363 ENSMUSG00000106910.1 ENSMUSG00000106910 ENSMUST00000202238 Gm16273 processed_pseudogene Interval_24470 chr11 33501112 33501304 + 0 NA intron (ENSMUSG00000040594.19, intron 2 of 6) protein_coding-intron (ENSMUSG00000040594.19, intron 2 of 11) -48694 ENSMUSG00000040594.19 ENSMUSG00000040594 ENSMUST00000147751 Ranbp17 protein_coding Interval_96788 chr2 128256843 128258053 + 0 NA intron (ENSMUSG00000074813.14, intron 2 of 3) lincRNA-intron (ENSMUSG00000074813.14, intron 2 of 4) 67461 ENSMUSG00000085750.1 ENSMUSG00000085750 ENSMUST00000152439 Gm14009 lincRNA Interval_82411 chr18 73796160 73797280 + 0 NA TTS (ENSMUSG00000024556.4) protein_coding-TTS (ENSMUSG00000024556.4) 18729 ENSMUSG00000024556.4 ENSMUSG00000024556 ENSMUST00000235595 Me2 protein_coding Interval_6727 chr1 119032258 119032613 + 0 NA intron (ENSMUSG00000048402.14, intron 1 of 6) protein_coding-intron (ENSMUSG00000048402.14, intron 1 of 13) 20904 ENSMUSG00000048402.14 ENSMUSG00000048402 ENSMUST00000159678 Gli2 protein_coding Interval_3542 chr1 59458856 59459329 + 0 NA Intergenic Intergenic -9590 ENSMUSG00000104502.1 ENSMUSG00000104502 ENSMUST00000195013 Gm37737 TEC Interval_6245 chr1 104464398 104464654 + 0 NA Intergenic Intergenic 6890 ENSMUSG00000100059.1 ENSMUSG00000100059 ENSMUST00000190187 Gm29140 processed_pseudogene Interval_132137 chr5 142905391 142906880 + 0 NA promoter-TSS (ENSMUSG00000029580.14) protein_coding-promoter-TSS (ENSMUSG00000029580.14) -2481 ENSMUSG00000029580.14 ENSMUSG00000029580 ENSMUST00000164765 Actb protein_coding Interval_60266 chr15 71554237 71554982 + 0 NA intron (ENSMUSG00000036800.8, intron 3 of 8) protein_coding-intron (ENSMUSG00000036800.8, intron 3 of 19) 173229 ENSMUSG00000036800.8 ENSMUSG00000036800 ENSMUST00000229189 Fam135b protein_coding Interval_5460 chr1 89022990 89023158 + 0 NA TTS (ENSMUSG00000099378.1) lincRNA-TTS (ENSMUSG00000099378.1) 6961 ENSMUSG00000099378.1 ENSMUSG00000099378 ENSMUST00000186180 1700067G17Rik lincRNA Interval_139226 chr6 97321315 97322667 + 0 NA intron (ENSMUSG00000030064.16, intron 2 of 4) protein_coding-intron (ENSMUSG00000030064.16, intron 11 of 22) -30730 ENSMUSG00000030064.16 ENSMUSG00000030064 ENSMUST00000124050 Frmd4b protein_coding Interval_58196 chr15 30653495 30653797 + 0 NA intron (ENSMUSG00000022240.10, intron 1 of 1) protein_coding-intron (ENSMUSG00000022240.10, intron 7 of 22) -27025 ENSMUSG00000115337.1 ENSMUSG00000115337 ENSMUST00000228499 4930570B17Rik antisense Interval_2156 chr1 36767445 36767720 + 0 NA intron (ENSMUSG00000026117.10, intron 1 of 1) protein_coding-intron (ENSMUSG00000026117.10, intron 1 of 12) -2410 ENSMUSG00000097291.1 ENSMUSG00000097291 ENSMUST00000180475 Gm18828 transcribed_processed_pseudogene Interval_164632 chr9 40212323 40212538 + 0 NA exon (ENSMUSG00000025602.13, exon 7 of 7) protein_coding-exon (ENSMUSG00000025602.13, exon 7 of 7) 20101 ENSMUSG00000025602.13 ENSMUSG00000025602 ENSMUST00000168832 Zfp202 protein_coding Interval_133269 chr5 150978166 150978922 + 0 NA intron (ENSMUSG00000058488.7, intron 1 of 2) protein_coding-intron (ENSMUSG00000058488.7, intron 1 of 4) 25840 ENSMUSG00000058488.7 ENSMUSG00000058488 ENSMUST00000202096 Kl protein_coding Interval_104935 chr3 79139408 79140348 + 0 NA intron (ENSMUSG00000062232.14, intron 3 of 4) protein_coding-intron (ENSMUSG00000062232.14, intron 1 of 23) -56496 ENSMUSG00000064693.1 ENSMUSG00000064693 ENSMUST00000082759 Gm24150 snRNA Interval_34811 chr12 11529968 11530426 + 0 NA Intergenic Intergenic -17807 ENSMUSG00000113226.1 ENSMUSG00000113226 ENSMUST00000221353 Gm47808 processed_transcript Interval_15657 chr10 53156586 53156946 + 0 NA Intergenic Intergenic -24414 ENSMUSG00000112376.1 ENSMUSG00000112376 ENSMUST00000219795 Gm40649 lincRNA Interval_25687 chr11 50781842 50782064 + 0 NA intron (ENSMUSG00000036545.9, intron 12 of 20) protein_coding-intron (ENSMUSG00000036545.9, intron 12 of 21) -27698 ENSMUSG00000088205.1 ENSMUSG00000088205 ENSMUST00000157580 Gm23392 rRNA Interval_89856 chr2 26030320 26030742 + 0 NA Intergenic Intergenic -21308 ENSMUSG00000036352.16 ENSMUSG00000036352 ENSMUST00000150608 Ubac1 protein_coding Interval_11417 chr1 181829825 181830132 + 0 NA promoter-TSS (ENSMUSG00000004880.11) protein_coding-promoter-TSS (ENSMUSG00000004880.11) 10590 ENSMUSG00000089429.1 ENSMUSG00000089429 ENSMUST00000158804 Gm26004 rRNA Interval_66951 chr16 38741928 38743101 + 0 NA intron (ENSMUSG00000022793.17, intron 1 of 6) protein_coding-intron (ENSMUSG00000022793.17, intron 1 of 6) 7795 ENSMUSG00000083183.1 ENSMUSG00000083183 ENSMUST00000119414 Gm15575 processed_pseudogene Interval_82974 chr18 80109674 80110140 + 0 NA intron (ENSMUSG00000056214.9, intron 2 of 2) protein_coding-intron (ENSMUSG00000056214.9, intron 2 of 2) -19945 ENSMUSG00000096597.1 ENSMUSG00000096597 ENSMUST00000178391 Gm21886 protein_coding Interval_49569 chr13 113031468 113032452 + 0 NA Intergenic Intergenic -3427 ENSMUSG00000078926.8 ENSMUSG00000078926 ENSMUST00000181741 Cdc20b protein_coding Interval_20898 chr10 121840190 121840906 + 0 NA intron (ENSMUSG00000020121.15, intron 9 of 21) protein_coding-intron (ENSMUSG00000020121.15, intron 9 of 21) -8490 ENSMUSG00000112596.1 ENSMUSG00000112596 ENSMUST00000218664 Gm48804 TEC Interval_137607 chr6 75288522 75289360 + 0 NA Intergenic Intergenic 9118 ENSMUSG00000107951.1 ENSMUSG00000107951 ENSMUST00000204734 Gm6210 processed_pseudogene Interval_139234 chr6 97416642 97417394 + 0 NA intron (ENSMUSG00000030064.16, intron 4 of 7) protein_coding-intron (ENSMUSG00000030064.16, intron 3 of 22) -32732 ENSMUSG00000108185.1 ENSMUSG00000108185 ENSMUST00000204326 Gm19653 processed_pseudogene Interval_97336 chr2 134700396 134700632 + 0 NA Intergenic Intergenic 30593 ENSMUSG00000081243.1 ENSMUSG00000081243 ENSMUST00000120576 Gm14037 processed_pseudogene Interval_75177 chr17 64396458 64397801 + 0 NA Intergenic Intergenic -43677 ENSMUSG00000098984.1 ENSMUSG00000098984 ENSMUST00000185032 Mir6420 miRNA Interval_106713 chr3 99311108 99311313 + 0 NA intron (ENSMUSG00000027868.11, intron 2 of 2) protein_coding-intron (ENSMUSG00000027868.11, intron 2 of 7) -49925 ENSMUSG00000105689.1 ENSMUSG00000105689 ENSMUST00000196228 Gm43120 antisense Interval_46280 chr13 63335720 63336504 + 0 NA intron (ENSMUSG00000089854.2, intron 1 of 1) protein_coding-intron (ENSMUSG00000021461.17, intron 8 of 15) 6556 ENSMUSG00000089854.2 ENSMUSG00000089854 ENSMUST00000160065 Gm16133 antisense Interval_38675 chr12 80966334 80966788 + 0 NA intron (ENSMUSG00000021135.8, intron 1 of 3) protein_coding-intron (ENSMUSG00000021135.8, intron 1 of 4) 1517 ENSMUSG00000021135.8 ENSMUSG00000021135 ENSMUST00000220266 Slc10a1 protein_coding Interval_133878 chr6 13938478 13939165 + 0 NA intron (ENSMUSG00000097616.7, intron 2 of 2) lincRNA-intron (ENSMUSG00000097616.7, intron 2 of 2) -25373 ENSMUSG00000107562.1 ENSMUSG00000107562 ENSMUST00000203018 Gm44412 processed_pseudogene Interval_142957 chr6 147318410 147318639 + 0 NA Intergenic Intergenic 46687 ENSMUSG00000081023.1 ENSMUSG00000081023 ENSMUST00000118025 Gm15766 processed_pseudogene Interval_122033 chr5 14318420 14320566 + 0 NA Intergenic Intergenic 77031 ENSMUSG00000106310.1 ENSMUSG00000106310 ENSMUST00000197397 Gm43523 TEC Interval_146171 chr7 44506392 44507085 + 0 NA intron (ENSMUSG00000038670.11, intron 4 of 4) protein_coding-intron (ENSMUSG00000038670.11, intron 22 of 27) 2340 ENSMUSG00000038670.11 ENSMUSG00000038670 ENSMUST00000207516 Mybpc2 protein_coding Interval_103664 chr3 51464938 51465978 + 0 NA intron (ENSMUSG00000063273.11, intron 16 of 19) protein_coding-intron (ENSMUSG00000063273.11, intron 16 of 19) -18462 ENSMUSG00000027739.9 ENSMUSG00000027739 ENSMUST00000054387 Rab33b protein_coding Interval_15296 chr10 44303638 44304209 + 0 NA intron (ENSMUSG00000038160.7, intron 5 of 7) protein_coding-intron (ENSMUSG00000038160.7, intron 5 of 7) 35508 ENSMUSG00000038160.7 ENSMUSG00000038160 ENSMUST00000217412 Atg5 protein_coding Interval_95006 chr2 102959610 102959962 + 0 NA Intergenic Intergenic -58328 ENSMUSG00000005087.17 ENSMUSG00000005087 ENSMUST00000124624 Cd44 protein_coding Interval_69574 chr16 94362393 94362731 + 0 NA intron (ENSMUSG00000022940.17, intron 3 of 3) protein_coding-intron (ENSMUSG00000022940.17, intron 3 of 3) -3250 ENSMUSG00000089814.1 ENSMUSG00000089814 ENSMUST00000117891 Gm15310 transcribed_processed_pseudogene Interval_72472 chr17 30033042 30034253 + 0 NA intron (ENSMUSG00000044477.12, intron 1 of 4) protein_coding-intron (ENSMUSG00000044477.12, intron 1 of 4) -28956 ENSMUSG00000117371.1 ENSMUSG00000117371 ENSMUST00000233996 Gm50019 bidirectional_promoter_lncRNA Interval_130814 chr5 130896454 130897100 + 0 NA exon (ENSMUSG00000107207.1, exon 1 of 1) TEC-exon (ENSMUSG00000107207.1, exon 1 of 1) 1836 ENSMUSG00000107207.1 ENSMUSG00000107207 ENSMUST00000201486 Gm42897 TEC Interval_172945 chrX 57198088 57198348 + 0 NA Intergenic Intergenic -2425 ENSMUSG00000085808.1 ENSMUSG00000085808 ENSMUST00000138082 Gm14718 antisense Interval_63243 chr15 99899262 99899608 + 0 NA promoter-TSS (ENSMUSG00000037438.6) processed_pseudogene-promoter-TSS (ENSMUSG00000037438.6) -879 ENSMUSG00000037438.6 ENSMUSG00000037438 ENSMUST00000038391 Uqcrh-ps1 processed_pseudogene Interval_150070 chr7 105603011 105603920 + 0 NA TTS (ENSMUSG00000036989.16) protein_coding-TTS (ENSMUSG00000036989.16) -3353 ENSMUSG00000030895.9 ENSMUSG00000030895 ENSMUST00000210531 Hpx protein_coding Interval_11105 chr1 179396757 179397399 + 0 NA intron (ENSMUSG00000055067.15, intron 5 of 5) protein_coding-intron (ENSMUSG00000055067.15, intron 5 of 5) 120927 ENSMUSG00000055067.15 ENSMUSG00000055067 ENSMUST00000194237 Smyd3 protein_coding Interval_108788 chr3 131283019 131283486 + 0 NA TTS (ENSMUSG00000106268.1) processed_pseudogene-TTS (ENSMUSG00000106268.1) 1892 ENSMUSG00000106268.1 ENSMUSG00000106268 ENSMUST00000198141 Gm18492 processed_pseudogene Interval_11750 chr1 185190630 185191388 + 0 NA Intergenic Intergenic -51898 ENSMUSG00000077571.1 ENSMUSG00000077571 ENSMUST00000104383 Snora36b snoRNA Interval_155961 chr8 41296409 41296682 + 0 NA intron (ENSMUSG00000031592.10, intron 23 of 38) protein_coding-intron (ENSMUSG00000031592.10, intron 22 of 37) 56767 ENSMUSG00000031592.10 ENSMUSG00000031592 ENSMUST00000211247 Pcm1 protein_coding Interval_27808 chr11 70104006 70104679 + 0 NA intron (ENSMUSG00000040963.15, intron 3 of 4) protein_coding-intron (ENSMUSG00000040963.15, intron 7 of 8) 6650 ENSMUSG00000040963.15 ENSMUSG00000040963 ENSMUST00000179757 Asgr2 protein_coding Interval_60532 chr15 74671875 74673596 + 0 NA promoter-TSS (ENSMUSG00000022602.14) protein_coding-promoter-TSS (ENSMUSG00000022602.14) -165 ENSMUSG00000022602.14 ENSMUSG00000022602 ENSMUST00000110009 Arc protein_coding Interval_9658 chr1 160792014 160793383 + 0 NA intron (ENSMUSG00000026721.16, intron 1 of 3) protein_coding-intron (ENSMUSG00000026721.16, intron 1 of 20) -5984 ENSMUSG00000102852.1 ENSMUSG00000102852 ENSMUST00000195784 Gm37083 lincRNA Interval_162925 chr9 13463940 13464359 + 0 NA intron (ENSMUSG00000031925.17, intron 1 of 4) protein_coding-intron (ENSMUSG00000031925.17, intron 1 of 4) -17396 ENSMUSG00000090592.2 ENSMUSG00000090592 ENSMUST00000167906 Gm17571 protein_coding Interval_36781 chr12 53846377 53846615 + 0 NA intron (ENSMUSG00000021010.9, intron 4 of 10) protein_coding-intron (ENSMUSG00000021010.9, intron 5 of 11) 232896 ENSMUSG00000099407.1 ENSMUSG00000099407 ENSMUST00000185390 1700060O08Rik antisense Interval_113483 chr4 55304148 55304382 + 0 NA Intergenic Intergenic -4420 ENSMUSG00000077403.2 ENSMUSG00000077403 ENSMUST00000104215 Gm25419 snoRNA Interval_46226 chr13 62760235 62761048 + 0 NA promoter-TSS (ENSMUSG00000096098.1) miRNA-promoter-TSS (ENSMUSG00000096098.1) -98 ENSMUSG00000096098.1 ENSMUSG00000096098 ENSMUST00000178651 Mir713 miRNA Interval_99422 chr2 160931000 160931725 + 0 NA Intergenic Intergenic -4714 ENSMUSG00000087147.1 ENSMUSG00000087147 ENSMUST00000131908 Gm14228 lincRNA Interval_23083 chr11 19829417 19830901 + 0 NA Intergenic Intergenic 46507 ENSMUSG00000081820.1 ENSMUSG00000081820 ENSMUST00000120073 Gm12029 processed_pseudogene Interval_85103 chr19 22873268 22874185 + 0 NA intron (ENSMUSG00000052387.16, intron 4 of 21) protein_coding-intron (ENSMUSG00000052387.16, intron 9 of 26) 123121 ENSMUSG00000065507.3 ENSMUSG00000065507 ENSMUST00000083573 Mir204 miRNA Interval_99683 chr2 164178355 164178563 + 0 NA intron (ENSMUSG00000040154.11, intron 2 of 2) protein_coding-intron (ENSMUSG00000040154.11, intron 3 of 3) 875 ENSMUSG00000085649.7 ENSMUSG00000085649 ENSMUST00000135739 A730032A03Rik antisense Interval_10445 chr1 170907316 170908879 + 0 NA exon (ENSMUSG00000070524.1, exon 5 of 6) protein_coding-exon (ENSMUSG00000070524.1, exon 5 of 6) 4844 ENSMUSG00000070524.1 ENSMUSG00000070524 ENSMUST00000094337 Fcrlb protein_coding Interval_12079 chr1 189607906 189608986 + 0 NA Intergenic Intergenic 31788 ENSMUSG00000103087.1 ENSMUSG00000103087 ENSMUST00000192679 Gm38122 TEC Interval_68570 chr16 78930568 78932430 + 0 NA intron (ENSMUSG00000022860.15, intron 1 of 5) protein_coding-intron (ENSMUSG00000022860.15, intron 1 of 5) 222 ENSMUSG00000022860.15 ENSMUSG00000022860 ENSMUST00000231883 Chodl protein_coding Interval_28486 chr11 76295998 76296533 + 0 NA intron (ENSMUSG00000020844.6, intron 1 of 7) protein_coding-intron (ENSMUSG00000020844.6, intron 1 of 7) 47053 ENSMUSG00000038046.4 ENSMUSG00000038046 ENSMUST00000155526 Mrm3 protein_coding Interval_4859 chr1 80323471 80324278 + 0 NA intron (ENSMUSG00000004364.14, intron 1 of 5) protein_coding-intron (ENSMUSG00000004364.14, intron 1 of 15) 4120 ENSMUSG00000103525.1 ENSMUSG00000103525 ENSMUST00000192816 Gm37262 TEC Interval_8218 chr1 136565948 136566857 + 0 NA Intergenic Intergenic 13075 ENSMUSG00000104509.1 ENSMUSG00000104509 ENSMUST00000193724 Gm33994 lincRNA Interval_122060 chr5 15773833 15775080 + 0 NA Intergenic Intergenic -23545 ENSMUSG00000106083.1 ENSMUSG00000106083 ENSMUST00000199749 Gm42452 unprocessed_pseudogene Interval_133939 chr6 15959797 15960833 + 0 NA Intergenic Intergenic 124226 ENSMUSG00000108048.1 ENSMUSG00000108048 ENSMUST00000203790 Gm43990 TEC Interval_147887 chr7 75110554 75111062 + 0 NA Intergenic Intergenic 36918 ENSMUSG00000053025.13 ENSMUSG00000053025 ENSMUST00000206236 Sv2b protein_coding Interval_144017 chr7 19000946 19001652 + 0 NA promoter-TSS (ENSMUSG00000086533.2) antisense-promoter-TSS (ENSMUSG00000086533.2) -93 ENSMUSG00000086533.2 ENSMUSG00000086533 ENSMUST00000206381 Mypopos antisense Interval_4427 chr1 74091767 74093263 + 0 NA intron (ENSMUSG00000055322.16, intron 1 of 33) protein_coding-intron (ENSMUSG00000055322.16, intron 1 of 34) 6161 ENSMUSG00000055322.16 ENSMUSG00000055322 ENSMUST00000190599 Tns1 protein_coding Interval_57347 chr15 9356715 9357655 + 0 NA intron (ENSMUSG00000049152.11, intron 3 of 3) protein_coding-intron (ENSMUSG00000049152.11, intron 3 of 6) 21596 ENSMUSG00000049152.11 ENSMUSG00000049152 ENSMUST00000144755 Ugt3a2 protein_coding Interval_31848 chr11 103332478 103334423 + 0 NA promoter-TSS (ENSMUSG00000034255.17) protein_coding-promoter-TSS (ENSMUSG00000034255.17) -55 ENSMUSG00000034255.17 ENSMUSG00000034255 ENSMUST00000092557 Arhgap27 protein_coding Interval_7493 chr1 131827368 131828645 + 0 NA promoter-TSS (ENSMUSG00000013275.9) protein_coding-promoter-TSS (ENSMUSG00000013275.9) -14834 ENSMUSG00000013275.9 ENSMUSG00000013275 ENSMUST00000146360 Slc41a1 protein_coding Interval_88108 chr19 59193867 59194747 + 0 NA Intergenic Intergenic 13652 ENSMUSG00000117834.1 ENSMUSG00000117834 ENSMUST00000236019 Gm50429 processed_pseudogene Interval_42662 chr13 17774710 17775320 + 0 NA intron (ENSMUSG00000041297.8, intron 1 of 13) protein_coding-intron (ENSMUSG00000041297.8, intron 1 of 13) -17690 ENSMUSG00000113140.1 ENSMUSG00000113140 ENSMUST00000220696 Gm48624 TEC Interval_172101 chrX 7569630 7569883 + 0 NA intron (ENSMUSG00000103436.1, intron 14 of 16) protein_coding-intron (ENSMUSG00000039556.16, intron 1 of 3) 4527 ENSMUSG00000039556.16 ENSMUSG00000039556 ENSMUST00000123090 Ppp1r3f protein_coding Interval_6828 chr1 119919216 119919726 + 0 NA Intergenic Intergenic -6263 ENSMUSG00000036975.5 ENSMUSG00000036975 ENSMUST00000037906 Tmem177 protein_coding Interval_63619 chr15 102386378 102387323 + 0 NA Intergenic Intergenic 12970 ENSMUSG00000088286.1 ENSMUSG00000088286 ENSMUST00000157661 Gm23590 snRNA Interval_81299 chr18 57659677 57660677 + 0 NA intron (ENSMUSG00000058925.11, intron 5 of 5) protein_coding-intron (ENSMUSG00000058925.11, intron 5 of 6) 9381 ENSMUSG00000088776.1 ENSMUSG00000088776 ENSMUST00000158151 Gm26038 snRNA Interval_13533 chr10 19239720 19240612 + 0 NA Intergenic Intergenic -21868 ENSMUSG00000111606.1 ENSMUSG00000111606 ENSMUST00000215977 Gm7213 processed_pseudogene Interval_23480 chr11 22846146 22846416 + 0 NA promoter-TSS (ENSMUSG00000077621.1) snoRNA-promoter-TSS (ENSMUSG00000077621.1) -587 ENSMUSG00000077621.1 ENSMUSG00000077621 ENSMUST00000104433 Gm23772 snoRNA Interval_31734 chr11 102529824 102530282 + 0 NA intron (ENSMUSG00000034621.14, intron 2 of 7) protein_coding-intron (ENSMUSG00000034621.14, intron 3 of 5) -15649 ENSMUSG00000081677.1 ENSMUSG00000081677 ENSMUST00000119782 Mdk-ps1 processed_pseudogene Interval_6246 chr1 104583709 104584248 + 0 NA Intergenic Intergenic -25546 ENSMUSG00000100935.1 ENSMUSG00000100935 ENSMUST00000189434 Gm29592 unprocessed_pseudogene Interval_16477 chr10 63078544 63079402 + 0 NA Intergenic Intergenic -3913 ENSMUSG00000112374.1 ENSMUSG00000112374 ENSMUST00000218358 Gm48072 antisense Interval_49528 chr13 112751485 112752837 + 0 NA Intergenic Intergenic -12687 ENSMUSG00000114286.1 ENSMUSG00000114286 ENSMUST00000225832 Gm47850 lincRNA Interval_38069 chr12 75467279 75468541 + 0 NA intron (ENSMUSG00000021051.10, intron 7 of 12) protein_coding-intron (ENSMUSG00000021051.10, intron 8 of 13) 40835 ENSMUSG00000112254.1 ENSMUSG00000112254 ENSMUST00000218033 Gm47690 TEC Interval_167050 chr9 64903065 64903979 + 0 NA intron (ENSMUSG00000053641.9, intron 23 of 33) protein_coding-intron (ENSMUSG00000053641.9, intron 23 of 33) -8961 ENSMUSG00000053641.9 ENSMUSG00000053641 ENSMUST00000217307 Dennd4a protein_coding Interval_88637 chr2 8056473 8056678 + 0 NA Intergenic Intergenic 91290 ENSMUSG00000083269.1 ENSMUSG00000083269 ENSMUST00000118295 Gm13254 processed_pseudogene Interval_158137 chr8 79094475 79094763 + 0 NA intron (ENSMUSG00000071064.15, intron 5 of 13) protein_coding-intron (ENSMUSG00000071064.15, intron 5 of 14) 66032 ENSMUSG00000071064.15 ENSMUSG00000071064 ENSMUST00000129613 Zfp827 protein_coding Interval_119404 chr4 137492853 137493474 + 0 NA intron (ENSMUSG00000028763.18, intron 1 of 96) protein_coding-intron (ENSMUSG00000028763.18, intron 1 of 96) -29296 ENSMUSG00000028763.18 ENSMUSG00000028763 ENSMUST00000155648 Hspg2 protein_coding Interval_78061 chr18 7608472 7609375 + 0 NA promoter-TSS (ENSMUSG00000057440.8) protein_coding-promoter-TSS (ENSMUSG00000057440.8) 17931 ENSMUSG00000057440.8 ENSMUSG00000057440 ENSMUST00000233992 Mpp7 protein_coding Interval_113182 chr4 49153966 49154318 + 0 NA intron (ENSMUSG00000063446.4, intron 1 of 3) protein_coding-intron (ENSMUSG00000063446.4, intron 1 of 7) 94686 ENSMUSG00000063446.4 ENSMUSG00000063446 ENSMUST00000151692 Plppr1 protein_coding Interval_132008 chr5 142240268 142240556 + 0 NA Intergenic Intergenic -42694 ENSMUSG00000097947.1 ENSMUSG00000097947 ENSMUST00000182990 Gm26970 processed_pseudogene Interval_111413 chr4 21340298 21340549 + 0 NA Intergenic Intergenic 11903 ENSMUSG00000089322.1 ENSMUSG00000089322 ENSMUST00000158697 Gm25977 snoRNA Interval_141558 chr6 129245929 129246168 + 0 NA intron (ENSMUSG00000112144.1, intron 4 of 5) lincRNA-intron (ENSMUSG00000112144.1, intron 3 of 4) 7772 ENSMUSG00000112144.1 ENSMUSG00000112144 ENSMUST00000218416 Gm47861 lincRNA Interval_83982 chr19 5931904 5932124 + 0 NA Intergenic Intergenic -7198 ENSMUSG00000045664.5 ENSMUSG00000045664 ENSMUST00000055458 Cdc42ep2 protein_coding Interval_95335 chr2 106712950 106713273 + 0 NA intron (ENSMUSG00000016386.15, intron 2 of 2) protein_coding-intron (ENSMUSG00000016386.15, intron 2 of 6) 17891 ENSMUSG00000016386.15 ENSMUSG00000016386 ENSMUST00000133401 Mpped2 protein_coding Interval_65660 chr16 24943136 24943989 + 0 NA intron (ENSMUSG00000033306.15, intron 5 of 7) protein_coding-intron (ENSMUSG00000033306.15, intron 10 of 12) 59389 ENSMUSG00000077602.1 ENSMUSG00000077602 ENSMUST00000104414 Gm22672 snoRNA Interval_114669 chr4 83634025 83634307 + 0 NA intron (ENSMUSG00000052407.17, intron 10 of 25) protein_coding-intron (ENSMUSG00000052407.17, intron 10 of 25) 36863 ENSMUSG00000098217.1 ENSMUSG00000098217 ENSMUST00000182160 Gm27046 processed_pseudogene Interval_20183 chr10 115489180 115489961 + 0 NA intron (ENSMUSG00000020140.15, intron 4 of 16) protein_coding-intron (ENSMUSG00000020140.15, intron 4 of 17) 61063 ENSMUSG00000034163.10 ENSMUSG00000034163 ENSMUST00000141246 Zfc3h1 protein_coding Interval_146246 chr7 44944055 44944291 + 0 NA intron (ENSMUSG00000059891.14, intron 2 of 3) protein_coding-intron (ENSMUSG00000059891.14, intron 2 of 10) -10141 ENSMUSG00000059891.14 ENSMUSG00000059891 ENSMUST00000208475 Tsks protein_coding Interval_15110 chr10 42635096 42635352 + 0 NA intron (ENSMUSG00000038280.12, intron 2 of 6) protein_coding-intron (ENSMUSG00000038280.12, intron 2 of 5) -43742 ENSMUSG00000038280.12 ENSMUSG00000038280 ENSMUST00000154048 Ostm1 protein_coding Interval_115134 chr4 91327469 91327686 + 0 NA intron (ENSMUSG00000008489.18, intron 1 of 7) protein_coding-intron (ENSMUSG00000008489.18, intron 1 of 6) 29105 ENSMUSG00000008489.18 ENSMUSG00000008489 ENSMUST00000176151 Elavl2 protein_coding Interval_146067 chr7 43640622 43641207 + 0 NA intron (ENSMUSG00000030472.9, intron 3 of 5) protein_coding-intron (ENSMUSG00000030472.9, intron 3 of 5) 6207 ENSMUSG00000030472.9 ENSMUSG00000030472 ENSMUST00000032663 Ceacam18 protein_coding Interval_140423 chr6 117986849 117987417 + 0 NA Intergenic Intergenic -10074 ENSMUSG00000082791.3 ENSMUSG00000082791 ENSMUST00000118257 Gm4875 processed_pseudogene Interval_146400 chr7 45689130 45689406 + 0 NA intron (ENSMUSG00000070564.15, intron 2 of 6) protein_coding-intron (ENSMUSG00000040364.8, intron 1 of 3) 4839 ENSMUSG00000070564.15 ENSMUSG00000070564 ENSMUST00000183120 Ntn5 protein_coding Interval_40239 chr12 102696384 102696658 + 0 NA promoter-TSS (ENSMUSG00000057963.9) protein_coding-promoter-TSS (ENSMUSG00000057963.9) -11501 ENSMUSG00000089324.1 ENSMUSG00000089324 ENSMUST00000158699 Mir1936 miRNA Interval_62801 chr15 97073055 97074035 + 0 NA Intergenic Intergenic -53594 ENSMUSG00000022464.14 ENSMUSG00000022464 ENSMUST00000230907 Slc38a4 protein_coding Interval_104875 chr3 77200924 77201193 + 0 NA Intergenic Intergenic -95773 ENSMUSG00000088481.1 ENSMUSG00000088481 ENSMUST00000157856 Gm23644 snoRNA Interval_29760 chr11 86630797 86631428 + 0 NA promoter-TSS (ENSMUSG00000083992.1) processed_pseudogene-promoter-TSS (ENSMUSG00000083992.1) -86 ENSMUSG00000083992.1 ENSMUSG00000083992 ENSMUST00000117851 Gm11478 processed_pseudogene Interval_100136 chr2 167263033 167263755 + 0 NA Intergenic Intergenic 18383 ENSMUSG00000083661.1 ENSMUSG00000083661 ENSMUST00000118980 Gm11473 processed_pseudogene Interval_89247 chr2 18436595 18437225 + 0 NA Intergenic Intergenic -97921 ENSMUSG00000082520.2 ENSMUSG00000082520 ENSMUST00000118436 Gm13349 processed_pseudogene Interval_42391 chr13 12596831 12597367 + 0 NA intron (ENSMUSG00000057069.7, intron 10 of 15) protein_coding-intron (ENSMUSG00000057069.7, intron 10 of 15) 7534 ENSMUSG00000065158.1 ENSMUSG00000065158 ENSMUST00000083224 Gm25483 snoRNA Interval_101522 chr3 3714973 3715337 + 0 NA Intergenic Intergenic -76743 ENSMUSG00000069125.2 ENSMUSG00000069125 ENSMUST00000091375 Rps24-ps2 processed_pseudogene Interval_106356 chr3 95588272 95589188 + 0 NA promoter-TSS (ENSMUSG00000046519.15) protein_coding-promoter-TSS (ENSMUSG00000046519.15) -241 ENSMUSG00000105460.1 ENSMUSG00000105460 ENSMUST00000198013 Gm42671 TEC Interval_36550 chr12 49373550 49374944 + 0 NA intron (ENSMUSG00000112763.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000112763.1, intron 1 of 2) 7638 ENSMUSG00000112763.1 ENSMUSG00000112763 ENSMUST00000218927 Gm34304 lincRNA Interval_117123 chr4 119708095 119708486 + 0 NA Intergenic Intergenic -49509 ENSMUSG00000032978.14 ENSMUSG00000032978 ENSMUST00000044426 Guca2b protein_coding Interval_170916 chr9 112071101 112071464 + 0 NA intron (ENSMUSG00000032503.18, intron 17 of 18) protein_coding-intron (ENSMUSG00000032503.18, intron 17 of 18) 47429 ENSMUSG00000065441.2 ENSMUSG00000065441 ENSMUST00000083507 Mir128-2 miRNA Interval_98989 chr2 156508733 156509647 + 0 NA exon (ENSMUSG00000027624.20, exon 11 of 22) protein_coding-exon (ENSMUSG00000027624.20, exon 11 of 22) 2796 ENSMUSG00000027624.20 ENSMUSG00000027624 ENSMUST00000137067 Epb41l1 protein_coding Interval_92160 chr2 54849107 54850416 + 0 NA intron (ENSMUSG00000060988.12, intron 3 of 11) protein_coding-intron (ENSMUSG00000060988.12, intron 2 of 10) -154224 ENSMUSG00000089352.1 ENSMUSG00000089352 ENSMUST00000158727 Gm25489 snRNA Interval_31833 chr11 103217847 103218731 + 0 NA intron (ENSMUSG00000044787.7, intron 1 of 4) protein_coding-intron (ENSMUSG00000044787.7, intron 1 of 4) 143 ENSMUSG00000044787.7 ENSMUSG00000044787 ENSMUST00000103076 Spata32 protein_coding Interval_5278 chr1 87198301 87199147 + 0 NA exon (ENSMUSG00000026251.13, exon 12 of 12) protein_coding-exon (ENSMUSG00000026251.13, exon 12 of 12) -7350 ENSMUSG00000026253.14 ENSMUSG00000026253 ENSMUST00000189392 Chrng protein_coding Interval_41469 chr12 114748900 114749321 + 0 NA Intergenic Intergenic -2404 ENSMUSG00000094561.1 ENSMUSG00000094561 ENSMUST00000103507 Ighv1-22 IG_V_gene Interval_85037 chr19 21723099 21724026 + 0 NA Intergenic Intergenic -5708 ENSMUSG00000118055.1 ENSMUSG00000118055 ENSMUST00000235761 Gm50129 processed_pseudogene Interval_145339 chr7 34094760 34095162 + 0 NA promoter-TSS (ENSMUSG00000078752.3) protein_coding-promoter-TSS (ENSMUSG00000078752.3) -470 ENSMUSG00000078752.3 ENSMUSG00000078752 ENSMUST00000108083 Scgb1b30 protein_coding Interval_109646 chr3 145701838 145703987 + 0 NA Intergenic Intergenic 36254 ENSMUSG00000105608.1 ENSMUSG00000105608 ENSMUST00000198263 Gm43408 processed_pseudogene Interval_118908 chr4 134395779 134396816 + 0 NA promoter-TSS (ENSMUSG00000037366.14) protein_coding-promoter-TSS (ENSMUSG00000037366.14) -1026 ENSMUSG00000037366.14 ENSMUSG00000037366 ENSMUST00000145626 Pafah2 protein_coding Interval_128798 chr5 115319735 115320649 + 0 NA TTS (ENSMUSG00000086368.2) lincRNA-TTS (ENSMUSG00000086368.2) -7203 ENSMUSG00000029538.14 ENSMUSG00000029538 ENSMUST00000149510 Srsf9 protein_coding Interval_28192 chr11 74105140 74106039 + 0 NA intron (ENSMUSG00000081162.2, intron 1 of 1) unprocessed_pseudogene-intron (ENSMUSG00000081162.2, intron 1 of 1) 748 ENSMUSG00000081162.2 ENSMUSG00000081162 ENSMUST00000118094 Olfr400-ps1 unprocessed_pseudogene Interval_53169 chr14 54883095 54885180 + 0 NA TTS (ENSMUSG00000089682.10) protein_coding-TTS (ENSMUSG00000089682.10) 630 ENSMUSG00000089682.10 ENSMUSG00000089682 ENSMUST00000227108 Bcl2l2 protein_coding Interval_161809 chr8 122939029 122939448 + 0 NA intron (ENSMUSG00000035569.17, intron 2 of 2) protein_coding-intron (ENSMUSG00000035569.17, intron 2 of 12) 43705 ENSMUSG00000065915.1 ENSMUSG00000065915 ENSMUST00000083981 Gm24445 snRNA Interval_164653 chr9 40345517 40346357 + 0 NA exon (ENSMUSG00000040111.17, exon 1 of 20) protein_coding-exon (ENSMUSG00000040111.17, exon 1 of 20) -2999 ENSMUSG00000111271.1 ENSMUSG00000111271 ENSMUST00000217414 Gm48127 sense_intronic Interval_6738 chr1 119087583 119087795 + 0 NA Intergenic Intergenic 29220 ENSMUSG00000097408.1 ENSMUSG00000097408 ENSMUST00000181458 Gm26831 lincRNA Interval_111748 chr4 27213096 27213349 + 0 NA Intergenic Intergenic 9182 ENSMUSG00000080958.1 ENSMUSG00000080958 ENSMUST00000118849 Gm11902 processed_pseudogene Interval_104965 chr3 79325535 79326307 + 0 NA Intergenic Intergenic -19458 ENSMUSG00000091685.6 ENSMUSG00000091685 ENSMUST00000199658 Gm17359 protein_coding Interval_19046 chr10 94047813 94048158 + 0 NA intron (ENSMUSG00000020021.4, intron 2 of 20) protein_coding-intron (ENSMUSG00000020021.4, intron 2 of 20) -12184 ENSMUSG00000110869.1 ENSMUSG00000110869 ENSMUST00000214203 Gm49628 TEC Interval_2424 chr1 39219308 39219719 + 0 NA intron (ENSMUSG00000026077.15, intron 1 of 20) protein_coding-intron (ENSMUSG00000026077.15, intron 1 of 20) 25782 ENSMUSG00000026077.15 ENSMUSG00000026077 ENSMUST00000172825 Npas2 protein_coding Interval_130446 chr5 127691244 127691598 + 0 NA exon (ENSMUSG00000049971.17, exon 11 of 11) protein_coding-exon (ENSMUSG00000049971.17, exon 11 of 11) 59159 ENSMUSG00000049971.17 ENSMUSG00000049971 ENSMUST00000134529 Glt1d1 protein_coding Interval_131192 chr5 135702914 135703132 + 0 NA intron (ENSMUSG00000005514.14, intron 1 of 14) protein_coding-intron (ENSMUSG00000005514.14, intron 1 of 15) -4004 ENSMUSG00000080972.1 ENSMUSG00000080972 ENSMUST00000122167 Gm16061 processed_pseudogene Interval_131832 chr5 140196313 140198223 + 0 NA intron (ENSMUSG00000029554.15, intron 2 of 3) protein_coding-intron (ENSMUSG00000029554.15, intron 10 of 17) -12274 ENSMUSG00000087248.7 ENSMUSG00000087248 ENSMUST00000133999 Gm16120 antisense Interval_131320 chr5 136426828 136428276 + 0 NA intron (ENSMUSG00000029705.17, intron 1 of 20) protein_coding-intron (ENSMUSG00000029705.17, intron 2 of 23) -51749 ENSMUSG00000106479.1 ENSMUSG00000106479 ENSMUST00000200230 Mir721 miRNA Interval_101226 chr2 179617520 179618280 + 0 NA intron (ENSMUSG00000000305.12, intron 2 of 2) protein_coding-intron (ENSMUSG00000000305.12, intron 2 of 15) -4333 ENSMUSG00000083410.1 ENSMUSG00000083410 ENSMUST00000120800 Gm14300 processed_pseudogene Interval_6966 chr1 121448247 121448980 + 0 NA exon (ENSMUSG00000026339.18, exon 6 of 6) protein_coding-exon (ENSMUSG00000026339.18, exon 6 of 6) 17538 ENSMUSG00000026339.18 ENSMUSG00000026339 ENSMUST00000152959 Ccdc93 protein_coding Interval_103364 chr3 40455805 40456711 + 0 NA Intergenic Intergenic 53516 ENSMUSG00000037884.6 ENSMUSG00000037884 ENSMUST00000202778 1700017G19Rik lincRNA Interval_29371 chr11 83491247 83491720 + 0 NA intron (ENSMUSG00000020680.15, intron 1 of 10) protein_coding-intron (ENSMUSG00000020680.15, intron 7 of 15) 18372 ENSMUSG00000020680.15 ENSMUSG00000020680 ENSMUST00000133170 Taf15 protein_coding Interval_165130 chr9 44715259 44716347 + 0 NA promoter-TSS (ENSMUSG00000048537.16) protein_coding-promoter-TSS (ENSMUSG00000048537.16) -2538 ENSMUSG00000048537.16 ENSMUSG00000048537 ENSMUST00000123003 Phldb1 protein_coding Interval_70292 chr17 8264605 8265145 + 0 NA Intergenic Intergenic -18887 ENSMUSG00000023861.17 ENSMUSG00000023861 ENSMUST00000130559 Mpc1 protein_coding Interval_150543 chr7 112187919 112188671 + 0 NA Intergenic Intergenic -29238 ENSMUSG00000030772.6 ENSMUSG00000030772 ENSMUST00000033036 Dkk3 protein_coding Interval_44507 chr13 45507095 45508739 + 0 NA intron (ENSMUSG00000000253.13, intron 1 of 8) protein_coding-intron (ENSMUSG00000000253.13, intron 1 of 8) -21587 ENSMUSG00000089211.1 ENSMUSG00000089211 ENSMUST00000158586 Gm23387 snRNA Interval_112772 chr4 44858077 44858458 + 0 NA intron (ENSMUSG00000035649.17, intron 3 of 6) protein_coding-intron (ENSMUSG00000035649.17, intron 2 of 5) -7040 ENSMUSG00000094842.1 ENSMUSG00000094842 ENSMUST00000175591 Gm22639 miRNA Interval_123213 chr5 30682911 30683255 + 0 NA Intergenic Intergenic 16085 ENSMUSG00000029177.9 ENSMUSG00000029177 ENSMUST00000134372 Cenpa protein_coding Interval_134967 chr6 34189542 34190029 + 0 NA Intergenic Intergenic 10553 ENSMUSG00000087613.1 ENSMUSG00000087613 ENSMUST00000145644 Gm13855 lincRNA Interval_92215 chr2 56881821 56882171 + 0 NA Intergenic Intergenic 96185 ENSMUSG00000098437.1 ENSMUSG00000098437 ENSMUST00000184814 Mir195b miRNA Interval_121952 chr5 12308792 12309142 + 0 NA Intergenic Intergenic 46820 ENSMUSG00000104941.1 ENSMUSG00000104941 ENSMUST00000198497 Gm8953 lincRNA Interval_58639 chr15 36743979 36745654 + 0 NA Intergenic Intergenic 21169 ENSMUSG00000115103.1 ENSMUSG00000115103 ENSMUST00000226969 Gm49263 lincRNA Interval_36856 chr12 54702767 54703789 + 0 NA Intergenic Intergenic -1572 ENSMUSG00000072255.3 ENSMUSG00000072255 ENSMUST00000097040 Rpl31-ps17 processed_pseudogene Interval_37800 chr12 72056395 72057692 + 0 NA Intergenic Intergenic -7784 ENSMUSG00000114155.1 ENSMUSG00000114155 ENSMUST00000221336 Gm7986 processed_pseudogene Interval_60895 chr15 77683789 77684560 + 0 NA Intergenic Intergenic -14683 ENSMUSG00000071716.5 ENSMUSG00000071716 ENSMUST00000096358 Apol7e protein_coding Interval_45154 chr13 52801088 52801373 + 0 NA Intergenic Intergenic -44025 ENSMUSG00000113737.1 ENSMUSG00000113737 ENSMUST00000223209 BB123696 lincRNA Interval_72266 chr17 28883862 28884377 + 0 NA intron (ENSMUSG00000043286.12, intron 7 of 9) protein_coding-intron (ENSMUSG00000043286.12, intron 7 of 9) -21146 ENSMUSG00000085333.1 ENSMUSG00000085333 ENSMUST00000125317 1700030A11Rik antisense Interval_163166 chr9 16361262 16362907 + 0 NA intron (ENSMUSG00000074505.6, intron 2 of 25) protein_coding-intron (ENSMUSG00000074505.6, intron 1 of 24) 73311 ENSMUSG00000111652.1 ENSMUSG00000111652 ENSMUST00000215220 Gm48726 TEC Interval_104492 chr3 66686815 66687583 + 0 NA Intergenic Intergenic -123648 ENSMUSG00000103600.1 ENSMUSG00000103600 ENSMUST00000193914 Gm17952 processed_pseudogene Interval_52074 chr14 35157246 35157494 + 0 NA intron (ENSMUSG00000041078.7, intron 4 of 15) protein_coding-intron (ENSMUSG00000041078.7, intron 4 of 15) 62068 ENSMUSG00000115826.1 ENSMUSG00000115826 ENSMUST00000227262 Gm49034 processed_pseudogene Interval_173874 chrX 106536530 106536801 + 0 NA Intergenic Intergenic -46521 ENSMUSG00000073010.9 ENSMUSG00000073010 ENSMUST00000101297 Gm5127 protein_coding Interval_148070 chr7 79021273 79021867 + 0 NA intron (ENSMUSG00000097441.1, intron 2 of 2) antisense-intron (ENSMUSG00000097441.1, intron 2 of 2) 31753 ENSMUSG00000097441.1 ENSMUSG00000097441 ENSMUST00000180546 Gm26633 antisense Interval_153289 chr7 143349482 143350683 + 0 NA TTS (ENSMUSG00000104485.1) TEC-TTS (ENSMUSG00000104485.1) 3830 ENSMUSG00000104485.1 ENSMUSG00000104485 ENSMUST00000193147 Gm38065 TEC Interval_147763 chr7 73424401 73425675 + 0 NA Intergenic Intergenic 2788 ENSMUSG00000108601.1 ENSMUSG00000108601 ENSMUST00000205492 Gm44645 TEC Interval_27555 chr11 68665379 68666536 + 0 NA Intergenic Intergenic -26197 ENSMUSG00000020900.15 ENSMUSG00000020900 ENSMUST00000139059 Myh10 protein_coding Interval_42533 chr13 14644925 14645213 + 0 NA intron (ENSMUSG00000015671.11, intron 6 of 6) protein_coding-intron (ENSMUSG00000015671.11, intron 6 of 6) 14792 ENSMUSG00000039182.6 ENSMUSG00000039182 ENSMUST00000222052 AW209491 protein_coding Interval_23229 chr11 20692782 20692979 + 0 NA promoter-TSS (ENSMUSG00000049659.15) protein_coding-promoter-TSS (ENSMUSG00000049659.15) -36540 ENSMUSG00000084252.1 ENSMUSG00000084252 ENSMUST00000120008 Gm12036 processed_pseudogene Interval_111063 chr4 11577480 11580284 + 0 NA promoter-TSS (ENSMUSG00000094595.1) protein_coding-promoter-TSS (ENSMUSG00000094595.1) -783 ENSMUSG00000094595.1 ENSMUSG00000094595 ENSMUST00000180239 Fsbp protein_coding Interval_148198 chr7 79765640 79766455 + 0 NA intron (ENSMUSG00000039099.7, intron 7 of 17) protein_coding-intron (ENSMUSG00000039099.7, intron 7 of 17) 22884 ENSMUSG00000039099.7 ENSMUSG00000039099 ENSMUST00000035622 Wdr93 protein_coding Interval_123113 chr5 29775665 29776003 + 0 NA intron (ENSMUSG00000029131.14, intron 8 of 8) protein_coding-intron (ENSMUSG00000029131.14, intron 8 of 9) 19203 ENSMUSG00000106558.1 ENSMUSG00000106558 ENSMUST00000197149 Gm5552 processed_pseudogene Interval_17255 chr10 75325715 75326588 + 0 NA TTS (ENSMUSG00000020178.6) protein_coding-TTS (ENSMUSG00000020178.6) 3031 ENSMUSG00000020178.6 ENSMUSG00000020178 ENSMUST00000217703 Adora2a protein_coding Interval_173110 chrX 71971097 71971314 + 0 NA exon (ENSMUSG00000033361.13, exon 4 of 4) protein_coding-exon (ENSMUSG00000033361.13, exon 4 of 4) 8580 ENSMUSG00000033361.13 ENSMUSG00000033361 ENSMUST00000048790 Prrg3 protein_coding Interval_79841 chr18 35516856 35518112 + 0 NA Intergenic Intergenic -18615 ENSMUSG00000024357.10 ENSMUSG00000024357 ENSMUST00000235691 Sil1 protein_coding Interval_131186 chr5 135669547 135670065 + 0 NA promoter-TSS (ENSMUSG00000005514.14) protein_coding-promoter-TSS (ENSMUSG00000005514.14) 3181 ENSMUSG00000105239.1 ENSMUSG00000105239 ENSMUST00000198157 Gm43091 lincRNA Interval_162105 chr8 125165589 125166411 + 0 NA intron (ENSMUSG00000043051.17, intron 10 of 13) protein_coding-intron (ENSMUSG00000043051.17, intron 9 of 12) 61323 ENSMUSG00000086694.1 ENSMUSG00000086694 ENSMUST00000156666 Gm16237 antisense Interval_106265 chr3 95014651 95016770 + 0 NA promoter-TSS (ENSMUSG00000019338.13) protein_coding-promoter-TSS (ENSMUSG00000019338.13) -486 ENSMUSG00000019338.13 ENSMUSG00000019338 ENSMUST00000128438 Zfp687 protein_coding Interval_15335 chr10 44698625 44700710 + 0 NA exon (ENSMUSG00000111641.1, exon 1 of 1) TEC-exon (ENSMUSG00000111641.1, exon 1 of 1) 2487 ENSMUSG00000111641.1 ENSMUSG00000111641 ENSMUST00000217069 Gm47388 TEC Interval_160588 chr8 110886575 110887814 + 0 NA exon (ENSMUSG00000033703.9, exon 18 of 24) protein_coding-exon (ENSMUSG00000033703.9, exon 18 of 24) 15294 ENSMUSG00000033703.9 ENSMUSG00000033703 ENSMUST00000212568 Fcsk protein_coding Interval_3468 chr1 58619002 58619569 + 0 NA Intergenic Intergenic 6280 ENSMUSG00000100202.1 ENSMUSG00000100202 ENSMUST00000191562 Gm29389 processed_pseudogene Interval_114270 chr4 70365182 70365787 + 0 NA intron (ENSMUSG00000039298.16, intron 3 of 33) protein_coding-intron (ENSMUSG00000039298.16, intron 3 of 33) 44959 ENSMUSG00000039298.16 ENSMUSG00000039298 ENSMUST00000126416 Cdk5rap2 protein_coding Interval_154352 chr8 14922181 14923833 + 0 NA intron (ENSMUSG00000071176.10, intron 1 of 15) protein_coding-intron (ENSMUSG00000071176.10, intron 1 of 28) -22294 ENSMUSG00000071176.10 ENSMUSG00000071176 ENSMUST00000162636 Arhgef10 protein_coding Interval_112873 chr4 45703826 45704516 + 0 NA intron (ENSMUSG00000073860.12, intron 1 of 2) lincRNA-intron (ENSMUSG00000073860.12, intron 1 of 2) -10998 ENSMUSG00000085305.1 ENSMUSG00000085305 ENSMUST00000124989 Gm12410 lincRNA Interval_471 chr1 6058961 6059584 + 0 NA Intergenic Intergenic -9227 ENSMUSG00000103090.1 ENSMUSG00000103090 ENSMUST00000191956 Gm19214 processed_pseudogene Interval_55972 chr14 103500761 103501152 + 0 NA intron (ENSMUSG00000115762.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000115762.1, intron 1 of 2) -12386 ENSMUSG00000022123.9 ENSMUSG00000022123 ENSMUST00000095576 Scel protein_coding Interval_82024 chr18 67248546 67249159 + 0 NA Intergenic Intergenic -3411 ENSMUSG00000062526.4 ENSMUSG00000062526 ENSMUST00000237631 Mppe1 protein_coding Interval_149953 chr7 103615266 103616127 + 0 NA Intergenic Intergenic -3162 ENSMUSG00000045132.3 ENSMUSG00000045132 ENSMUST00000052152 Olfr620 protein_coding Interval_115995 chr4 106869088 106869741 + 0 NA Intergenic Intergenic -21494 ENSMUSG00000086940.1 ENSMUSG00000086940 ENSMUST00000151369 Gm12746 lincRNA Interval_164635 chr9 40216090 40216307 + 0 NA Intergenic Intergenic 23869 ENSMUSG00000025602.13 ENSMUSG00000025602 ENSMUST00000168832 Zfp202 protein_coding Interval_159096 chr8 90415991 90416204 + 0 NA Intergenic Intergenic -67966 ENSMUSG00000043668.13 ENSMUSG00000043668 ENSMUST00000176034 Tox3 protein_coding Interval_31594 chr11 101581386 101582880 + 0 NA promoter-TSS (ENSMUSG00000034947.13) protein_coding-promoter-TSS (ENSMUSG00000034947.13) -111 ENSMUSG00000034947.13 ENSMUSG00000034947 ENSMUST00000128659 Tmem106a protein_coding Interval_174697 chrX 163311053 163311345 + 0 NA Intergenic Intergenic 16170 ENSMUSG00000082970.1 ENSMUSG00000082970 ENSMUST00000122155 Gm15214 processed_pseudogene Interval_72766 chr17 32035673 32036994 + 0 NA promoter-TSS (ENSMUSG00000058392.13) protein_coding-promoter-TSS (ENSMUSG00000058392.13) 16 ENSMUSG00000002076.12 ENSMUSG00000002076 ENSMUST00000138172 Hsf2bp protein_coding Interval_8587 chr1 143561445 143561825 + 0 NA Intergenic Intergenic -79029 ENSMUSG00000033849.3 ENSMUSG00000033849 ENSMUST00000038252 B3galt2 protein_coding Interval_118336 chr4 130341565 130342158 + 0 NA intron (ENSMUSG00000028772.19, intron 3 of 7) protein_coding-intron (ENSMUSG00000028772.19, intron 3 of 7) 18055 ENSMUSG00000028772.19 ENSMUSG00000028772 ENSMUST00000167964 Zcchc17 protein_coding Interval_145452 chr7 34845772 34846262 + 0 NA Intergenic Intergenic -92205 ENSMUSG00000060402.8 ENSMUSG00000060402 ENSMUST00000205390 Chst8 protein_coding Interval_98334 chr2 151566046 151566345 + 0 NA Intergenic Intergenic -6427 ENSMUSG00000027456.8 ENSMUSG00000027456 ENSMUST00000028950 Sdcbp2 protein_coding Interval_61805 chr15 84267082 84267941 + 0 NA intron (ENSMUSG00000022438.6, intron 2 of 2) protein_coding-intron (ENSMUSG00000022438.6, intron 1 of 12) 10371 ENSMUSG00000022438.6 ENSMUSG00000022438 ENSMUST00000131158 Parvb protein_coding Interval_115626 chr4 101463672 101464129 + 0 NA TTS (ENSMUSG00000028527.18) protein_coding-TTS (ENSMUSG00000028527.18) 16677 ENSMUSG00000028527.18 ENSMUSG00000028527 ENSMUST00000155749 Ak4 protein_coding Interval_80671 chr18 46152821 46153389 + 0 NA Intergenic Intergenic 22509 ENSMUSG00000033949.12 ENSMUSG00000033949 ENSMUST00000237526 Trim36 protein_coding Interval_88578 chr2 6344496 6346420 + 0 NA intron (ENSMUSG00000039046.15, intron 2 of 6) protein_coding-intron (ENSMUSG00000039046.15, intron 2 of 14) -22378 ENSMUSG00000118578.1 ENSMUSG00000118578 ENSMUST00000238876 AL845275.1 protein_coding Interval_2840 chr1 46196693 46197453 + 0 NA intron (ENSMUSG00000041144.12, intron 27 of 64) protein_coding-intron (ENSMUSG00000041144.12, intron 28 of 65) 130220 ENSMUSG00000041144.12 ENSMUSG00000041144 ENSMUST00000185879 Dnah7b protein_coding Interval_29374 chr11 83504941 83505188 + 0 NA exon (ENSMUSG00000020680.15, exon 15 of 16) protein_coding-exon (ENSMUSG00000020680.15, exon 15 of 16) -16092 ENSMUSG00000065307.1 ENSMUSG00000065307 ENSMUST00000083373 Gm23247 snRNA Interval_19562 chr10 103325609 103325839 + 0 NA Intergenic Intergenic -67726 ENSMUSG00000019894.14 ENSMUSG00000019894 ENSMUST00000219936 Slc6a15 protein_coding Interval_153889 chr8 10746360 10747501 + 0 NA intron (ENSMUSG00000109271.1, intron 2 of 3) lincRNA-intron (ENSMUSG00000109271.1, intron 2 of 3) 8040 ENSMUSG00000109271.1 ENSMUSG00000109271 ENSMUST00000207553 Gm39129 lincRNA Interval_142455 chr6 142466124 142466976 + 0 NA intron (ENSMUSG00000030244.7, intron 1 of 16) protein_coding-intron (ENSMUSG00000030244.7, intron 1 of 16) 41393 ENSMUSG00000030246.12 ENSMUSG00000030246 ENSMUST00000134191 Ldhb protein_coding Interval_129767 chr5 122206319 122206989 + 0 NA promoter-TSS (ENSMUSG00000064267.13) protein_coding-promoter-TSS (ENSMUSG00000064267.13) -3459 ENSMUSG00000064267.13 ENSMUSG00000064267 ENSMUST00000100747 Hvcn1 protein_coding Interval_71354 chr17 22590988 22591202 + 0 NA Intergenic Intergenic -9856 ENSMUSG00000094921.2 ENSMUSG00000094921 ENSMUST00000234826 Vmn2r112 protein_coding Interval_171972 chr9 123091600 123091840 + 0 NA intron (ENSMUSG00000025786.17, intron 2 of 7) protein_coding-intron (ENSMUSG00000025786.17, intron 3 of 7) 21427 ENSMUSG00000025786.17 ENSMUSG00000025786 ENSMUST00000130717 Zdhhc3 protein_coding Interval_107728 chr3 112129250 112129803 + 0 NA Intergenic Intergenic 69515 ENSMUSG00000089017.1 ENSMUSG00000089017 ENSMUST00000158392 Gm25519 snoRNA Interval_7338 chr1 129558002 129558539 + 0 NA intron (ENSMUSG00000042581.14, intron 1 of 3) protein_coding-intron (ENSMUSG00000042581.14, intron 2 of 15) -55005 ENSMUSG00000042581.14 ENSMUSG00000042581 ENSMUST00000143130 Thsd7b protein_coding Interval_8364 chr1 138106526 138106748 + 0 NA intron (ENSMUSG00000026395.16, intron 12 of 32) protein_coding-intron (ENSMUSG00000026395.16, intron 5 of 25) 61046 ENSMUSG00000104291.1 ENSMUSG00000104291 ENSMUST00000194467 A130071D04Rik TEC Interval_171426 chr9 118192017 118192257 + 0 NA Intergenic Intergenic 41906 ENSMUSG00000097402.1 ENSMUSG00000097402 ENSMUST00000181824 Gm17399 lincRNA Interval_147914 chr7 75518713 75519154 + 0 NA intron (ENSMUSG00000066406.16, intron 1 of 3) protein_coding-intron (ENSMUSG00000066406.16, intron 1 of 36) 34072 ENSMUSG00000108560.1 ENSMUSG00000108560 ENSMUST00000205567 Gm44695 TEC Interval_113330 chr4 53503997 53504640 + 0 NA intron (ENSMUSG00000028412.17, intron 3 of 15) protein_coding-intron (ENSMUSG00000028412.17, intron 3 of 15) 60379 ENSMUSG00000084970.1 ENSMUSG00000084970 ENSMUST00000138377 1700060J05Rik antisense Interval_18660 chr10 88866161 88866635 + 0 NA Intergenic Intergenic -19594 ENSMUSG00000020062.7 ENSMUSG00000020062 ENSMUST00000020255 Slc5a8 protein_coding Interval_124574 chr5 51494373 51494592 + 0 NA intron (ENSMUSG00000029167.13, intron 5 of 10) protein_coding-intron (ENSMUSG00000029167.13, intron 5 of 12) -1566 ENSMUSG00000105622.1 ENSMUSG00000105622 ENSMUST00000197704 Gm42615 TEC Interval_732 chr1 10256465 10256920 + 0 NA Intergenic Intergenic -57890 ENSMUSG00000102556.1 ENSMUSG00000102556 ENSMUST00000192111 Gm37569 TEC Interval_70066 chr17 5108185 5108418 + 0 NA intron (ENSMUSG00000069729.14, intron 3 of 19) protein_coding-intron (ENSMUSG00000069729.14, intron 3 of 18) 3809 ENSMUSG00000081783.2 ENSMUSG00000081783 ENSMUST00000122283 Gm15599 processed_pseudogene Interval_12544 chr1 195091622 195092867 + 0 NA promoter-TSS (ENSMUSG00000016493.13) protein_coding-promoter-TSS (ENSMUSG00000016493.13) -9169 ENSMUSG00000016493.13 ENSMUSG00000016493 ENSMUST00000162951 Cd46 protein_coding Interval_19739 chr10 108403246 108403743 + 0 NA intron (ENSMUSG00000035873.8, intron 2 of 4) protein_coding-intron (ENSMUSG00000035873.8, intron 4 of 6) -24573 ENSMUSG00000093762.1 ENSMUSG00000093762 ENSMUST00000177317 Gm25591 miRNA Interval_142074 chr6 136968579 136969106 + 0 NA TTS (ENSMUSG00000064330.9) protein_coding-TTS (ENSMUSG00000064330.9) -17754 ENSMUSG00000107734.1 ENSMUSG00000107734 ENSMUST00000203175 Gm30055 TEC Interval_46356 chr13 64178360 64178721 + 0 NA intron (ENSMUSG00000021476.9, intron 3 of 3) protein_coding-intron (ENSMUSG00000021476.9, intron 5 of 7) -5963 ENSMUSG00000021476.9 ENSMUSG00000021476 ENSMUST00000223377 Habp4 protein_coding Interval_106276 chr3 95071534 95072750 + 0 NA intron (ENSMUSG00000028126.16, intron 5 of 14) protein_coding-intron (ENSMUSG00000028126.16, intron 5 of 14) 11090 ENSMUSG00000028126.16 ENSMUSG00000028126 ENSMUST00000107229 Pip5k1a protein_coding Interval_80300 chr18 38968823 38969035 + 0 NA intron (ENSMUSG00000117994.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000117994.1, intron 4 of 4) 25263 ENSMUSG00000086991.1 ENSMUSG00000086991 ENSMUST00000131421 Gm15334 antisense Interval_82430 chr18 73935175 73935500 + 0 NA intron (ENSMUSG00000024558.12, intron 2 of 4) protein_coding-intron (ENSMUSG00000024558.12, intron 3 of 5) 75950 ENSMUSG00000064036.15 ENSMUSG00000064036 ENSMUST00000134847 Mro protein_coding Interval_3772 chr1 62990907 62991652 + 0 NA intron (ENSMUSG00000040865.15, intron 9 of 12) protein_coding-intron (ENSMUSG00000040865.15, intron 9 of 12) -34463 ENSMUSG00000104991.1 ENSMUSG00000104991 ENSMUST00000199516 Gm44468 miRNA Interval_74387 chr17 49850842 49851612 + 0 NA intron (ENSMUSG00000023999.14, intron 15 of 22) protein_coding-intron (ENSMUSG00000023999.14, intron 15 of 22) -29402 ENSMUSG00000090012.1 ENSMUSG00000090012 ENSMUST00000159971 Gm16555 antisense Interval_127357 chr5 103376344 103377765 + 0 NA Intergenic Intergenic -20356 ENSMUSG00000104684.1 ENSMUSG00000104684 ENSMUST00000200007 5430427N15Rik lincRNA Interval_74483 chr17 51739827 51741537 + 0 NA intron (ENSMUSG00000023927.15, intron 9 of 9) protein_coding-intron (ENSMUSG00000023927.15, intron 10 of 10) 8002 ENSMUSG00000102973.1 ENSMUSG00000102973 ENSMUST00000194215 E430014B02Rik TEC Interval_17500 chr10 77266067 77268226 + 0 NA TTS (ENSMUSG00000020260.9) protein_coding-TTS (ENSMUSG00000020260.9) 4698 ENSMUSG00000020260.9 ENSMUSG00000020260 ENSMUST00000218117 Pofut2 protein_coding Interval_58609 chr15 36541960 36543018 + 0 NA intron (ENSMUSG00000013611.14, intron 1 of 2) protein_coding-intron (ENSMUSG00000013611.14, intron 4 of 13) 3198 ENSMUSG00000013611.14 ENSMUSG00000013611 ENSMUST00000160936 Snx31 protein_coding Interval_38103 chr12 75663682 75664700 + 0 NA intron (ENSMUSG00000045690.8, intron 1 of 2) protein_coding-intron (ENSMUSG00000045690.8, intron 1 of 1) 5336 ENSMUSG00000045690.8 ENSMUSG00000045690 ENSMUST00000187307 Wdr89 protein_coding Interval_96713 chr2 127362359 127363762 + 0 NA promoter-TSS (ENSMUSG00000058620.5) protein_coding-promoter-TSS (ENSMUSG00000058620.5) -148 ENSMUSG00000058620.5 ENSMUSG00000058620 ENSMUST00000071902 Adra2b protein_coding Interval_151222 chr7 119817084 119817376 + 0 NA intron (ENSMUSG00000030924.16, intron 2 of 3) protein_coding-intron (ENSMUSG00000030924.16, intron 5 of 12) -23172 ENSMUSG00000030929.17 ENSMUSG00000030929 ENSMUST00000133926 Eri2 protein_coding Interval_164359 chr9 35820797 35821068 + 0 NA Intergenic Intergenic -14455 ENSMUSG00000104304.1 ENSMUSG00000104304 ENSMUST00000194200 Gm36974 TEC Interval_120893 chr4 151377019 151378035 + 0 NA intron (ENSMUSG00000085593.1, intron 1 of 1) protein_coding-intron (ENSMUSG00000014592.21, intron 5 of 23) 1057 ENSMUSG00000085593.1 ENSMUSG00000085593 ENSMUST00000129097 4930589P08Rik antisense Interval_93053 chr2 69847428 69847982 + 0 NA Intergenic Intergenic -13857 ENSMUSG00000068882.13 ENSMUSG00000068882 ENSMUST00000132603 Ssb protein_coding Interval_104347 chr3 63872939 63873351 + 0 NA intron (ENSMUSG00000036834.16, intron 1 of 22) protein_coding-intron (ENSMUSG00000036834.16, intron 2 of 4) 26327 ENSMUSG00000036834.16 ENSMUSG00000036834 ENSMUST00000161052 Plch1 protein_coding Interval_75583 chr17 68836426 68837736 + 0 NA promoter-TSS (ENSMUSG00000095407.2) protein_coding-promoter-TSS (ENSMUSG00000095407.2) 145 ENSMUSG00000117004.1 ENSMUSG00000117004 ENSMUST00000232811 Gm38593 antisense Interval_103535 chr3 47662342 47663133 + 0 NA Intergenic Intergenic -202399 ENSMUSG00000103798.1 ENSMUSG00000103798 ENSMUST00000193328 Gm2229 processed_pseudogene Interval_50114 chr14 8074507 8074980 + 0 NA Intergenic Intergenic -15335 ENSMUSG00000023156.4 ENSMUSG00000023156 ENSMUST00000180369 Rpp14 protein_coding Interval_24270 chr11 31979637 31980478 + 0 NA TTS (ENSMUSG00000020299.6) protein_coding-TTS (ENSMUSG00000020299.6) 14465 ENSMUSG00000020299.6 ENSMUSG00000020299 ENSMUST00000102829 4930524B15Rik protein_coding Interval_28843 chr11 78704179 78704620 + 0 NA Intergenic Intergenic 5362 ENSMUSG00000085115.1 ENSMUSG00000085115 ENSMUST00000145158 Gm11197 processed_pseudogene Interval_173836 chrX 105886591 105886955 + 0 NA intron (ENSMUSG00000031229.16, intron 4 of 7) protein_coding-intron (ENSMUSG00000031229.16, intron 5 of 5) -11468 ENSMUSG00000031229.16 ENSMUSG00000031229 ENSMUST00000126345 Atrx protein_coding Interval_131461 chr5 137375023 137377004 + 0 NA intron (ENSMUSG00000029710.15, intron 17 of 17) protein_coding-intron (ENSMUSG00000029710.15, intron 17 of 17) 25583 ENSMUSG00000029710.15 ENSMUSG00000029710 ENSMUST00000111054 Ephb4 protein_coding Interval_149445 chr7 98607324 98607541 + 0 NA intron (ENSMUSG00000035401.9, intron 3 of 4) protein_coding-intron (ENSMUSG00000035401.9, intron 14 of 19) -5099 ENSMUSG00000035401.9 ENSMUSG00000035401 ENSMUST00000206565 Emsy protein_coding Interval_114425 chr4 76013484 76015323 + 0 NA intron (ENSMUSG00000028399.18, intron 20 of 30) protein_coding-intron (ENSMUSG00000028399.18, intron 19 of 29) 70054 ENSMUSG00000028399.18 ENSMUSG00000028399 ENSMUST00000134604 Ptprd protein_coding Interval_171224 chr9 115331277 115331923 + 0 NA Intergenic Intergenic -21179 ENSMUSG00000032437.10 ENSMUSG00000032437 ENSMUST00000035010 Stt3b protein_coding Interval_158231 chr8 80217646 80217823 + 0 NA Intergenic Intergenic 22535 ENSMUSG00000110294.1 ENSMUSG00000110294 ENSMUST00000211276 Gm45430 lincRNA Interval_122015 chr5 13981532 13983276 + 0 NA Intergenic Intergenic -45490 ENSMUSG00000105528.1 ENSMUSG00000105528 ENSMUST00000197239 Gm43519 TEC Interval_121845 chr5 8790312 8790709 + 0 NA intron (ENSMUSG00000097279.1, intron 1 of 2) antisense-intron (ENSMUSG00000097279.1, intron 1 of 2) 8013 ENSMUSG00000097279.1 ENSMUSG00000097279 ENSMUST00000181058 Gm5106 antisense Interval_134060 chr6 18466010 18466252 + 0 NA intron (ENSMUSG00000000416.16, intron 2 of 22) protein_coding-intron (ENSMUSG00000000416.16, intron 2 of 22) -16791 ENSMUSG00000093271.1 ENSMUSG00000093271 ENSMUST00000175530 Gm26233 miRNA Interval_92990 chr2 69230963 69232068 + 0 NA Intergenic Intergenic 11487 ENSMUSG00000005232.11 ENSMUSG00000005232 ENSMUST00000151953 G6pc2 protein_coding Interval_122305 chr5 21072513 21073619 + 0 NA Intergenic Intergenic -17169 ENSMUSG00000028771.13 ENSMUSG00000028771 ENSMUST00000140057 Ptpn12 protein_coding Interval_108873 chr3 132887497 132887730 + 0 NA intron (ENSMUSG00000040998.18, intron 9 of 10) protein_coding-intron (ENSMUSG00000040998.18, intron 11 of 12) -9017 ENSMUSG00000106230.1 ENSMUSG00000106230 ENSMUST00000197386 Gm29811 lincRNA Interval_120815 chr4 150791809 150792347 + 0 NA Intergenic Intergenic -33655 ENSMUSG00000085097.1 ENSMUSG00000085097 ENSMUST00000133196 Gm13049 lincRNA Interval_154706 chr8 22742407 22743175 + 0 NA Intergenic Intergenic -15004 ENSMUSG00000031538.6 ENSMUSG00000031538 ENSMUST00000211033 Plat protein_coding Interval_21286 chr10 127674783 127675096 + 0 NA exon (ENSMUSG00000087163.1, exon 2 of 4) antisense-exon (ENSMUSG00000087163.1, exon 2 of 4) 1785 ENSMUSG00000087163.1 ENSMUSG00000087163 ENSMUST00000155550 Gm16230 antisense Interval_153276 chr7 143151123 143151339 + 0 NA intron (ENSMUSG00000009545.14, intron 2 of 11) protein_coding-intron (ENSMUSG00000009545.14, intron 2 of 15) -10623 ENSMUSG00000101062.1 ENSMUSG00000101062 ENSMUST00000185637 Gm28821 antisense Interval_144700 chr7 27601542 27602225 + 0 NA intron (ENSMUSG00000004056.15, intron 1 of 3) protein_coding-intron (ENSMUSG00000004056.15, intron 1 of 7) 10137 ENSMUSG00000004056.15 ENSMUSG00000004056 ENSMUST00000136981 Akt2 protein_coding Interval_54057 chr14 64834648 64835405 + 0 NA TTS (ENSMUSG00000102764.1) TEC-TTS (ENSMUSG00000102764.1) -4074 ENSMUSG00000098837.1 ENSMUSG00000098837 ENSMUST00000184830 Gm20111 processed_pseudogene Interval_89664 chr2 24343126 24343805 + 0 NA intron (ENSMUSG00000026981.15, intron 1 of 3) protein_coding-intron (ENSMUSG00000026981.15, intron 1 of 4) -1883 ENSMUSG00000026981.15 ENSMUSG00000026981 ENSMUST00000143423 Il1rn protein_coding Interval_43319 chr13 29084949 29085423 + 0 NA Intergenic Intergenic 45572 ENSMUSG00000082730.2 ENSMUSG00000082730 ENSMUST00000121672 Gm11363 processed_pseudogene Interval_37950 chr12 73268645 73268919 + 0 NA intron (ENSMUSG00000021103.12, intron 6 of 6) protein_coding-intron (ENSMUSG00000021103.12, intron 7 of 7) 17928 ENSMUSG00000034442.11 ENSMUSG00000034442 ENSMUST00000221189 Trmt5 protein_coding Interval_104281 chr3 62594822 62595301 + 0 NA exon (ENSMUSG00000043441.5, exon 3 of 4) protein_coding-exon (ENSMUSG00000043441.5, exon 3 of 4) 7713 ENSMUSG00000043441.5 ENSMUSG00000043441 ENSMUST00000149007 Gpr149 protein_coding Interval_129255 chr5 118472922 118473960 + 0 NA Intergenic Intergenic -13526 ENSMUSG00000082365.2 ENSMUSG00000082365 ENSMUST00000119191 Gm15754 transcribed_processed_pseudogene Interval_32583 chr11 108891181 108892045 + 0 NA Intergenic Intergenic -29723 ENSMUSG00000000142.15 ENSMUSG00000000142 ENSMUST00000139682 Axin2 protein_coding Interval_74408 chr17 49994174 49994454 + 0 NA exon (ENSMUSG00000039316.14, exon 10 of 10) protein_coding-exon (ENSMUSG00000039316.14, exon 10 of 10) 21487 ENSMUSG00000118535.1 ENSMUSG00000118535 ENSMUST00000239097 AC133946.1 unitary_pseudogene Interval_100178 chr2 167491983 167493482 + 0 NA promoter-TSS (ENSMUSG00000006418.17) protein_coding-promoter-TSS (ENSMUSG00000006418.17) 113 ENSMUSG00000047030.15 ENSMUSG00000047030 ENSMUST00000154770 Spata2 protein_coding Interval_140871 chr6 122491277 122492700 + 0 NA intron (ENSMUSG00000040649.15, intron 1 of 1) protein_coding-intron (ENSMUSG00000040649.15, intron 1 of 1) -5549 ENSMUSG00000040649.15 ENSMUSG00000040649 ENSMUST00000204045 Rimklb protein_coding Interval_74613 chr17 53757169 53757358 + 0 NA Intergenic Intergenic 11146 ENSMUSG00000106327.1 ENSMUSG00000106327 ENSMUST00000198886 Ckb-ps2 processed_pseudogene Interval_162001 chr8 124362334 124363738 + 0 NA Intergenic Intergenic 5798 ENSMUSG00000064664.1 ENSMUSG00000064664 ENSMUST00000082730 Gm24459 snRNA Interval_173627 chrX 101256941 101257109 + 0 NA TTS (ENSMUSG00000042903.8) protein_coding-TTS (ENSMUSG00000042903.8) 2458 ENSMUSG00000042903.8 ENSMUSG00000042903 ENSMUST00000138437 Foxo4 protein_coding Interval_158982 chr8 88431183 88431871 + 0 NA Intergenic Intergenic 40406 ENSMUSG00000110280.1 ENSMUSG00000110280 ENSMUST00000211701 Gm45497 processed_pseudogene Interval_107882 chr3 116566163 116566680 + 0 NA intron (ENSMUSG00000027961.7, intron 2 of 4) protein_coding-intron (ENSMUSG00000027961.7, intron 2 of 8) 3448 ENSMUSG00000027961.7 ENSMUSG00000027961 ENSMUST00000029573 Lrrc39 protein_coding Interval_85462 chr19 26733262 26734036 + 0 NA intron (ENSMUSG00000024921.17, intron 1 of 5) protein_coding-intron (ENSMUSG00000024921.17, intron 27 of 32) -14753 ENSMUSG00000024921.17 ENSMUSG00000024921 ENSMUST00000208984 Smarca2 protein_coding Interval_40109 chr12 101537681 101537978 + 0 NA intron (ENSMUSG00000047014.7, intron 4 of 6) protein_coding-intron (ENSMUSG00000047014.7, intron 15 of 26) -16250 ENSMUSG00000077058.1 ENSMUSG00000077058 ENSMUST00000103870 Gm24542 miRNA Interval_23262 chr11 20987118 20988329 + 0 NA Intergenic Intergenic -50022 ENSMUSG00000096061.1 ENSMUSG00000096061 ENSMUST00000178821 Gm23681 miRNA Interval_62210 chr15 88853342 88855242 + 0 NA Intergenic Intergenic -10628 ENSMUSG00000035828.11 ENSMUSG00000035828 ENSMUST00000229969 Pim3 protein_coding Interval_134601 chr6 29867310 29870575 + 0 NA intron (ENSMUSG00000029772.17, intron 1 of 2) protein_coding-intron (ENSMUSG00000029772.17, intron 2 of 16) -7737 ENSMUSG00000029772.17 ENSMUSG00000029772 ENSMUST00000128837 Ahcyl2 protein_coding Interval_28130 chr11 73039520 73040647 + 0 NA intron (ENSMUSG00000020785.17, intron 14 of 14) protein_coding-intron (ENSMUSG00000020785.17, intron 15 of 15) -7790 ENSMUSG00000020783.14 ENSMUSG00000020783 ENSMUST00000151823 Ncbp3 protein_coding Interval_113181 chr4 49058724 49060434 + 0 NA exon (ENSMUSG00000063446.4, exon 1 of 8) protein_coding-exon (ENSMUSG00000063446.4, exon 1 of 8) 123 ENSMUSG00000063446.4 ENSMUSG00000063446 ENSMUST00000151692 Plppr1 protein_coding Interval_112330 chr4 40583263 40583512 + 0 NA Intergenic Intergenic -57839 ENSMUSG00000086355.1 ENSMUSG00000086355 ENSMUST00000146043 4933428C19Rik lincRNA Interval_65827 chr16 29610425 29610710 + 0 NA intron (ENSMUSG00000038084.16, intron 9 of 10) protein_coding-intron (ENSMUSG00000038084.16, intron 10 of 29) 23553 ENSMUSG00000038084.16 ENSMUSG00000038084 ENSMUST00000160101 Opa1 protein_coding Interval_114323 chr4 72719777 72720603 + 0 NA Intergenic Intergenic 132442 ENSMUSG00000059343.4 ENSMUSG00000059343 ENSMUST00000078617 Aldoart1 protein_coding Interval_139525 chr6 100786914 100787120 + 0 NA intron (ENSMUSG00000030074.9, intron 4 of 6) protein_coding-intron (ENSMUSG00000030074.9, intron 4 of 6) -4812 ENSMUSG00000107989.1 ENSMUSG00000107989 ENSMUST00000203856 Gm19692 TEC Interval_43465 chr13 31557828 31560392 + 0 NA exon (ENSMUSG00000038415.10, exon 1 of 1) protein_coding-exon (ENSMUSG00000038415.10, exon 1 of 1) 223 ENSMUSG00000090863.1 ENSMUSG00000090863 ENSMUST00000170573 A530084C06Rik protein_coding Interval_109942 chr3 152083001 152084326 + 0 NA Intergenic Intergenic -11862 ENSMUSG00000105035.1 ENSMUSG00000105035 ENSMUST00000197505 Gm9682 processed_pseudogene Interval_113203 chr4 49662255 49663190 + 0 NA exon (ENSMUSG00000039579.15, exon 9 of 9) protein_coding-exon (ENSMUSG00000039579.15, exon 9 of 9) 19302 ENSMUSG00000028310.2 ENSMUSG00000028310 ENSMUST00000029991 Ppp3r2 protein_coding Interval_159326 chr8 93569610 93570006 + 0 NA intron (ENSMUSG00000110534.1, intron 2 of 2) lincRNA-intron (ENSMUSG00000110534.1, intron 1 of 1) -33978 ENSMUSG00000058019.13 ENSMUSG00000058019 ENSMUST00000212722 Ces5a protein_coding Interval_161730 chr8 122393215 122393635 + 0 NA intron (ENSMUSG00000017478.15, intron 4 of 17) protein_coding-intron (ENSMUSG00000017478.15, intron 4 of 18) 16777 ENSMUSG00000017478.15 ENSMUSG00000017478 ENSMUST00000177049 Zc3h18 protein_coding Interval_32951 chr11 113333282 113335154 + 0 NA intron (ENSMUSG00000041654.15, intron 6 of 9) protein_coding-intron (ENSMUSG00000041654.15, intron 7 of 10) -124549 ENSMUSG00000085421.1 ENSMUSG00000085421 ENSMUST00000130373 4732490B19Rik lincRNA Interval_119215 chr4 136259728 136260872 + 0 NA intron (ENSMUSG00000001604.14, intron 5 of 5) protein_coding-intron (ENSMUSG00000001604.14, intron 5 of 10) 12327 ENSMUSG00000001604.14 ENSMUSG00000001604 ENSMUST00000143942 Tcea3 protein_coding Interval_24643 chr11 35580511 35580794 + 0 NA intron (ENSMUSG00000056427.10, intron 4 of 8) protein_coding-intron (ENSMUSG00000056427.10, intron 9 of 35) -36164 ENSMUSG00000065583.1 ENSMUSG00000065583 ENSMUST00000083649 Mir218-2 miRNA Interval_62306 chr15 89585034 89585226 + 0 NA promoter-TSS (ENSMUSG00000022621.16) protein_coding-promoter-TSS (ENSMUSG00000022621.16) -588 ENSMUSG00000022621.16 ENSMUSG00000022621 ENSMUST00000171142 Rabl2 protein_coding Interval_36860 chr12 54760107 54761514 + 0 NA promoter-TSS (ENSMUSG00000005656.9) protein_coding-promoter-TSS (ENSMUSG00000005656.9) -22188 ENSMUSG00000096206.1 ENSMUSG00000096206 ENSMUST00000178469 Gm22317 snRNA Interval_51687 chr14 31385730 31386474 + 0 NA intron (ENSMUSG00000021892.14, intron 2 of 4) protein_coding-intron (ENSMUSG00000021892.14, intron 4 of 8) 20546 ENSMUSG00000021893.14 ENSMUSG00000021893 ENSMUST00000228237 Capn7 protein_coding Interval_172221 chrX 10409150 10409650 + 0 NA Intergenic Intergenic 7838 ENSMUSG00000086996.1 ENSMUSG00000086996 ENSMUST00000130841 4933416E14Rik transcribed_processed_pseudogene Interval_56362 chr14 118080497 118080888 + 0 NA Intergenic Intergenic 35718 ENSMUSG00000115689.1 ENSMUSG00000115689 ENSMUST00000228171 4930435M08Rik antisense Interval_85906 chr19 32885867 32886080 + 0 NA Intergenic Intergenic 74748 ENSMUSG00000013663.7 ENSMUSG00000013663 ENSMUST00000154806 Pten protein_coding Interval_85009 chr19 21346570 21346862 + 0 NA Intergenic Intergenic -33433 ENSMUSG00000118342.1 ENSMUSG00000118342 ENSMUST00000236886 Gm50255 lincRNA Interval_35951 chr12 32637481 32637814 + 0 NA Intergenic Intergenic 35647 ENSMUSG00000112617.1 ENSMUSG00000112617 ENSMUST00000220414 Gm47937 processed_pseudogene Interval_54687 chr14 73313159 73314460 + 0 NA intron (ENSMUSG00000022105.6, intron 2 of 26) protein_coding-intron (ENSMUSG00000022105.6, intron 2 of 26) -21283 ENSMUSG00000115573.1 ENSMUSG00000115573 ENSMUST00000226676 Gm49131 processed_pseudogene Interval_131522 chr5 137720223 137721729 + 0 NA exon (ENSMUSG00000082088.1, exon 2 of 2) unprocessed_pseudogene-exon (ENSMUSG00000082088.1, exon 2 of 2) 764 ENSMUSG00000082088.1 ENSMUSG00000082088 ENSMUST00000119241 Gm15753 unprocessed_pseudogene Interval_148164 chr7 79576582 79577040 + 0 NA TTS (ENSMUSG00000108373.1) lincRNA-TTS (ENSMUSG00000108373.1) 2257 ENSMUSG00000108373.1 ENSMUSG00000108373 ENSMUST00000205591 Gm45168 lincRNA Interval_40031 chr12 100609389 100609593 + 0 NA intron (ENSMUSG00000021180.9, intron 5 of 16) protein_coding-intron (ENSMUSG00000021180.9, intron 5 of 17) 14242 ENSMUSG00000113195.1 ENSMUSG00000113195 ENSMUST00000222512 Gm48586 TEC Interval_114284 chr4 70621318 70622380 + 0 NA Intergenic Intergenic -86921 ENSMUSG00000039270.9 ENSMUSG00000039270 ENSMUST00000037881 Megf9 protein_coding Interval_101981 chr3 14356722 14357419 + 0 NA Intergenic Intergenic -6047 ENSMUSG00000104375.1 ENSMUSG00000104375 ENSMUST00000192393 Gm6300 unprocessed_pseudogene Interval_7113 chr1 126129034 126130040 + 0 NA intron (ENSMUSG00000049690.15, intron 5 of 10) protein_coding-intron (ENSMUSG00000049690.15, intron 4 of 12) -58076 ENSMUSG00000102723.1 ENSMUSG00000102723 ENSMUST00000194647 Gm37936 TEC Interval_7008 chr1 121842250 121843341 + 0 NA Intergenic Intergenic 127729 ENSMUSG00000083584.1 ENSMUSG00000083584 ENSMUST00000119656 Gm15394 processed_pseudogene Interval_63840 chr16 3917018 3917378 + 0 NA intron (ENSMUSG00000093575.1, intron 7 of 8) protein_coding-intron (ENSMUSG00000014232.14, intron 4 of 11) -8006 ENSMUSG00000103481.1 ENSMUSG00000103481 ENSMUST00000193513 1700016D08Rik TEC Interval_84368 chr19 10413410 10414698 + 0 NA intron (ENSMUSG00000024743.16, intron 2 of 12) protein_coding-intron (ENSMUSG00000024743.16, intron 2 of 8) 24571 ENSMUSG00000024743.16 ENSMUSG00000024743 ENSMUST00000235717 Syt7 protein_coding Interval_56226 chr14 113847032 113848451 + 0 NA Intergenic Intergenic -54286 ENSMUSG00000115269.1 ENSMUSG00000115269 ENSMUST00000226804 Gm5209 processed_pseudogene Interval_55392 chr14 86487426 86488227 + 0 NA Intergenic Intergenic 15749 ENSMUSG00000115401.1 ENSMUSG00000115401 ENSMUST00000226392 Gm49157 processed_pseudogene Interval_32396 chr11 107334985 107335350 + 0 NA intron (ENSMUSG00000040430.18, intron 1 of 2) protein_coding-intron (ENSMUSG00000040430.18, intron 1 of 7) 2359 ENSMUSG00000040430.18 ENSMUSG00000040430 ENSMUST00000146680 Pitpnc1 protein_coding Interval_100133 chr2 167247446 167248810 + 0 NA Intergenic Intergenic 33649 ENSMUSG00000083661.1 ENSMUSG00000083661 ENSMUST00000118980 Gm11473 processed_pseudogene Interval_164783 chr9 41809078 41809983 + 0 NA intron (ENSMUSG00000110981.1, intron 1 of 2) processed_transcript-intron (ENSMUSG00000111511.1, intron 6 of 6) -3847 ENSMUSG00000111511.1 ENSMUSG00000111511 ENSMUST00000213182 AC160966.1 processed_transcript Interval_173001 chrX 61258214 61259079 + 0 NA intron (ENSMUSG00000118604.1, intron 8 of 9) processed_transcript-intron (ENSMUSG00000118604.1, intron 8 of 9) -32157 ENSMUSG00000118608.1 ENSMUSG00000118608 ENSMUST00000239181 Gm4988 transcribed_unprocessed_pseudogene Interval_115993 chr4 106865567 106865791 + 0 NA Intergenic Intergenic -17759 ENSMUSG00000086940.1 ENSMUSG00000086940 ENSMUST00000151369 Gm12746 lincRNA Interval_30871 chr11 96994924 96995346 + 0 NA Intergenic Intergenic -17424 ENSMUSG00000018678.13 ENSMUSG00000018678 ENSMUST00000062652 Sp2 protein_coding Interval_173603 chrX 100765095 100765912 + 0 NA Intergenic Intergenic -11782 ENSMUSG00000000881.12 ENSMUSG00000000881 ENSMUST00000146772 Dlg3 protein_coding Interval_147688 chr7 72009112 72009347 + 0 NA intron (ENSMUSG00000108800.1, intron 2 of 2) lincRNA-intron (ENSMUSG00000108800.1, intron 2 of 2) -47211 ENSMUSG00000108480.1 ENSMUSG00000108480 ENSMUST00000205873 Gm36633 lincRNA Interval_147116 chr7 63363911 63364126 + 0 NA intron (ENSMUSG00000097682.1, intron 7 of 9) lincRNA-intron (ENSMUSG00000097682.1, intron 7 of 9) 80511 ENSMUSG00000097682.1 ENSMUSG00000097682 ENSMUST00000181327 4930554H23Rik lincRNA Interval_103088 chr3 35154189 35155107 + 0 NA Intergenic Intergenic 121483 ENSMUSG00000105651.1 ENSMUSG00000105651 ENSMUST00000198307 1700017M07Rik lincRNA Interval_80814 chr18 47474158 47476055 + 0 NA intron (ENSMUSG00000117602.1, intron 4 of 4) lincRNA-intron (ENSMUSG00000117602.1, intron 4 of 4) -2398 ENSMUSG00000118180.1 ENSMUSG00000118180 ENSMUST00000236646 Gm50223 lincRNA Interval_110982 chr4 11016689 11017753 + 0 NA Intergenic Intergenic -9294 ENSMUSG00000049969.3 ENSMUSG00000049969 ENSMUST00000137891 Plekhf2 protein_coding Interval_70801 chr17 14744424 14744702 + 0 NA Intergenic Intergenic 35497 ENSMUSG00000079311.1 ENSMUSG00000079311 ENSMUST00000071282 Gm3222 processed_pseudogene Interval_95822 chr2 116933956 116935324 + 0 NA Intergenic Intergenic -28597 ENSMUSG00000087910.1 ENSMUSG00000087910 ENSMUST00000157285 Gm24914 misc_RNA Interval_5681 chr1 90885608 90887261 + 0 NA Intergenic Intergenic -15015 ENSMUSG00000103978.1 ENSMUSG00000103978 ENSMUST00000194161 4930474B08Rik TEC Interval_53358 chr14 56608559 56608958 + 0 NA intron (ENSMUSG00000054509.7, intron 16 of 34) antisense-intron (ENSMUSG00000090038.7, intron 4 of 4) 11755 ENSMUSG00000090038.7 ENSMUSG00000090038 ENSMUST00000161382 Gm16573 antisense Interval_137622 chr6 76181763 76182092 + 0 NA TTS (ENSMUSG00000106544.1) miRNA-TTS (ENSMUSG00000106544.1) 218 ENSMUSG00000106544.1 ENSMUSG00000106544 ENSMUST00000196707 Gm44334 miRNA Interval_164366 chr9 36235013 36235871 + 0 NA Intergenic Intergenic -14506 ENSMUSG00000111023.1 ENSMUSG00000111023 ENSMUST00000213629 Gm48391 transcribed_processed_pseudogene Interval_63353 chr15 100511908 100512278 + 0 NA intron (ENSMUSG00000009733.9, intron 1 of 3) protein_coding-intron (ENSMUSG00000009733.9, intron 13 of 15) 151 ENSMUSG00000009733.9 ENSMUSG00000009733 ENSMUST00000231138 Tfcp2 protein_coding Interval_32225 chr11 106310200 106310442 + 0 NA Intergenic Intergenic 4208 ENSMUSG00000040592.11 ENSMUSG00000040592 ENSMUST00000167143 Cd79b protein_coding Interval_121193 chr4 153936348 153936839 + 0 NA Intergenic Intergenic 13910 ENSMUSG00000086272.1 ENSMUSG00000086272 ENSMUST00000141582 BC039966 antisense Interval_140969 chr6 123293555 123294037 + 0 NA Intergenic Intergenic -3926 ENSMUSG00000030142.10 ENSMUSG00000030142 ENSMUST00000175954 Clec4e protein_coding Interval_58961 chr15 40977535 40979688 + 0 NA intron (ENSMUSG00000022306.9, intron 5 of 7) protein_coding-intron (ENSMUSG00000022306.9, intron 5 of 7) 18854 ENSMUSG00000115975.1 ENSMUSG00000115975 ENSMUST00000229850 Gm49526 TEC Interval_157193 chr8 67452203 67453766 + 0 NA Intergenic Intergenic -27937 ENSMUSG00000025588.4 ENSMUSG00000025588 ENSMUST00000026677 Nat1 protein_coding Interval_32911 chr11 113049567 113050024 + 0 NA intron (ENSMUSG00000087259.7, intron 1 of 1) lincRNA-intron (ENSMUSG00000087259.7, intron 2 of 2) 123282 ENSMUSG00000087259.7 ENSMUSG00000087259 ENSMUST00000150712 2610035D17Rik lincRNA Interval_45249 chr13 53501240 53501874 + 0 NA Intergenic Intergenic -24146 ENSMUSG00000063166.4 ENSMUSG00000063166 ENSMUST00000081132 Gm5449 processed_pseudogene Interval_19490 chr10 100164121 100165102 + 0 NA Intergenic Intergenic 20357 ENSMUSG00000095539.1 ENSMUSG00000095539 ENSMUST00000103846 Gm25287 miRNA Interval_34424 chr12 4082168 4083309 + 0 NA exon (ENSMUSG00000020657.16, exon 1 of 7) protein_coding-exon (ENSMUSG00000020657.16, exon 1 of 7) -5114 ENSMUSG00000112817.1 ENSMUSG00000112817 ENSMUST00000219162 Gm48122 processed_pseudogene Interval_88280 chr2 3283372 3285199 + 0 NA promoter-TSS (ENSMUSG00000026643.16) protein_coding-promoter-TSS (ENSMUSG00000026643.16) 4 ENSMUSG00000026643.16 ENSMUSG00000026643 ENSMUST00000155761 Nmt2 protein_coding Interval_117767 chr4 126114033 126114264 + 0 NA intron (ENSMUSG00000042608.15, intron 1 of 10) protein_coding-intron (ENSMUSG00000042608.15, intron 1 of 10) 10147 ENSMUSG00000042608.15 ENSMUSG00000042608 ENSMUST00000134369 Stk40 protein_coding Interval_42199 chr13 9809135 9809415 + 0 NA Intergenic Intergenic -11236 ENSMUSG00000113754.1 ENSMUSG00000113754 ENSMUST00000223507 Gm47401 processed_pseudogene Interval_106554 chr3 97188992 97190196 + 0 NA Intergenic Intergenic 30498 ENSMUSG00000028093.15 ENSMUSG00000028093 ENSMUST00000198329 Acp6 protein_coding Interval_20136 chr10 115200504 115201866 + 0 NA intron (ENSMUSG00000020130.9, intron 11 of 11) protein_coding-intron (ENSMUSG00000020130.9, intron 16 of 16) -25627 ENSMUSG00000006764.8 ENSMUSG00000006764 ENSMUST00000155794 Tph2 protein_coding Interval_104098 chr3 58561178 58562235 + 0 NA Intergenic Intergenic -14992 ENSMUSG00000075700.9 ENSMUSG00000075700 ENSMUST00000125815 Selenot protein_coding Interval_35871 chr12 31444030 31444542 + 0 NA intron (ENSMUSG00000001225.12, intron 1 of 19) protein_coding-intron (ENSMUSG00000001225.12, intron 1 of 20) 6069 ENSMUSG00000001225.12 ENSMUSG00000001225 ENSMUST00000109275 Slc26a3 protein_coding Interval_15098 chr10 42562201 42562727 + 0 NA TTS (ENSMUSG00000019803.11) protein_coding-TTS (ENSMUSG00000019803.11) 18310 ENSMUSG00000019803.11 ENSMUSG00000019803 ENSMUST00000143891 Nr2e1 protein_coding Interval_96950 chr2 129818809 129819428 + 0 NA intron (ENSMUSG00000037885.18, intron 3 of 3) protein_coding-intron (ENSMUSG00000037885.18, intron 3 of 3) 18601 ENSMUSG00000037885.18 ENSMUSG00000037885 ENSMUST00000166282 Stk35 protein_coding Interval_168912 chr9 88547229 88548786 + 0 NA promoter-TSS (ENSMUSG00000032425.15) protein_coding-promoter-TSS (ENSMUSG00000032425.15) -78 ENSMUSG00000032425.15 ENSMUSG00000032425 ENSMUST00000161458 Zfp949 protein_coding Interval_24580 chr11 34783078 34784071 + 0 NA intron (ENSMUSG00000020143.15, intron 1 of 26) protein_coding-intron (ENSMUSG00000020143.15, intron 1 of 51) 40377 ENSMUSG00000069910.2 ENSMUSG00000069910 ENSMUST00000148387 Spdl1 protein_coding Interval_93583 chr2 74661363 74662035 + 0 NA Intergenic Intergenic -2280 ENSMUSG00000001815.15 ENSMUSG00000001815 ENSMUST00000173623 Evx2 protein_coding Interval_121944 chr5 11458366 11459046 + 0 NA Intergenic Intergenic -1718 ENSMUSG00000105549.1 ENSMUSG00000105549 ENSMUST00000196320 Gm43540 processed_pseudogene Interval_24874 chr11 40680021 40680666 + 0 NA TTS (ENSMUSG00000042032.13) protein_coding-TTS (ENSMUSG00000042032.13) 5474 ENSMUSG00000042032.13 ENSMUSG00000042032 ENSMUST00000135617 Mat2b protein_coding Interval_70473 chr17 10448409 10450310 + 0 NA intron (ENSMUSG00000037196.6, intron 4 of 4) protein_coding-intron (ENSMUSG00000037196.6, intron 4 of 4) -6857 ENSMUSG00000089633.2 ENSMUSG00000089633 ENSMUST00000160738 A230009B12Rik antisense Interval_161748 chr8 122522670 122524110 + 0 NA intron (ENSMUSG00000014444.17, intron 1 of 50) protein_coding-intron (ENSMUSG00000014444.17, intron 1 of 50) -2716 ENSMUSG00000065080.1 ENSMUSG00000065080 ENSMUST00000083146 Gm26497 snRNA Interval_132885 chr5 148511543 148512493 + 0 NA intron (ENSMUSG00000001687.15, intron 2 of 5) protein_coding-intron (ENSMUSG00000001687.15, intron 1 of 4) 39638 ENSMUSG00000001687.15 ENSMUSG00000001687 ENSMUST00000201597 Ubl3 protein_coding Interval_103837 chr3 53516424 53516733 + 0 NA exon (ENSMUSG00000037016.11, exon 24 of 24) protein_coding-exon (ENSMUSG00000037016.11, exon 24 of 24) 4576 ENSMUSG00000087936.1 ENSMUSG00000087936 ENSMUST00000157311 Gm23675 snoRNA Interval_127356 chr5 103372167 103372619 + 0 NA Intergenic Intergenic -15695 ENSMUSG00000104684.1 ENSMUSG00000104684 ENSMUST00000200007 5430427N15Rik lincRNA Interval_130132 chr5 124459844 124460190 + 0 NA TTS (ENSMUSG00000049327.17) protein_coding-TTS (ENSMUSG00000049327.17) -12410 ENSMUSG00000082402.1 ENSMUSG00000082402 ENSMUST00000119162 Gm15621 processed_pseudogene Interval_87817 chr19 56231453 56232238 + 0 NA Intergenic Intergenic 45800 ENSMUSG00000077223.1 ENSMUSG00000077223 ENSMUST00000104035 Gm22271 snoRNA Interval_127891 chr5 108651583 108652378 + 0 NA exon (ENSMUSG00000004815.12, exon 15 of 20) protein_coding-exon (ENSMUSG00000004815.12, exon 15 of 20) 3153 ENSMUSG00000004815.12 ENSMUSG00000004815 ENSMUST00000139598 Dgkq protein_coding Interval_101264 chr2 179960363 179961171 + 0 NA intron (ENSMUSG00000039117.16, intron 1 of 14) protein_coding-intron (ENSMUSG00000039117.16, intron 1 of 14) -15226 ENSMUSG00000085704.1 ENSMUSG00000085704 ENSMUST00000150145 4921531C22Rik processed_transcript Interval_132919 chr5 148744668 148745017 + 0 NA Intergenic Intergenic 3002 ENSMUSG00000086494.1 ENSMUSG00000086494 ENSMUST00000150265 2210417A02Rik lincRNA Interval_47506 chr13 85922456 85923222 + 0 NA Intergenic Intergenic 31097 ENSMUSG00000114900.1 ENSMUSG00000114900 ENSMUST00000224403 Gm46396 processed_pseudogene Interval_129901 chr5 122991302 122991826 + 0 NA intron (ENSMUSG00000056735.5, intron 1 of 2) antisense-intron (ENSMUSG00000056735.5, intron 1 of 2) 2210 ENSMUSG00000056735.5 ENSMUSG00000056735 ENSMUST00000148466 A930024E05Rik antisense Interval_171402 chr9 117587013 117587973 + 0 NA intron (ENSMUSG00000039607.17, intron 1 of 14) protein_coding-intron (ENSMUSG00000039607.17, intron 1 of 14) 184514 ENSMUSG00000092504.1 ENSMUSG00000092504 ENSMUST00000173358 Gm20396 processed_pseudogene Interval_94959 chr2 102175103 102175352 + 0 NA TTS (ENSMUSG00000082328.1) processed_pseudogene-TTS (ENSMUSG00000082328.1) 937 ENSMUSG00000082328.1 ENSMUSG00000082328 ENSMUST00000119411 Gm13921 processed_pseudogene Interval_120080 chr4 141694965 141695298 + 0 NA intron (ENSMUSG00000078515.4, intron 7 of 9) protein_coding-intron (ENSMUSG00000078515.4, intron 7 of 9) -9532 ENSMUSG00000040715.12 ENSMUSG00000040715 ENSMUST00000105782 Rsc1a1 protein_coding Interval_174277 chrX 143051451 143051726 + 0 NA Intergenic Intergenic -48006 ENSMUSG00000085584.3 ENSMUSG00000085584 ENSMUST00000165829 Rtl9 protein_coding Interval_89716 chr2 24956738 24956968 + 0 NA intron (ENSMUSG00000026974.11, intron 4 of 5) protein_coding-intron (ENSMUSG00000026974.11, intron 4 of 5) -5599 ENSMUSG00000026975.10 ENSMUSG00000026975 ENSMUST00000124383 Dph7 protein_coding Interval_82524 chr18 74928533 74929291 + 0 NA Intergenic Intergenic -7368 ENSMUSG00000117767.1 ENSMUSG00000117767 ENSMUST00000236784 Gm18786 processed_pseudogene Interval_120564 chr4 149404822 149405027 + 0 NA intron (ENSMUSG00000028960.20, intron 1 of 29) protein_coding-intron (ENSMUSG00000028960.20, intron 1 of 9) 21061 ENSMUSG00000028960.20 ENSMUSG00000028960 ENSMUST00000131986 Ube4b protein_coding Interval_87071 chr19 45943735 45944224 + 0 NA intron (ENSMUSG00000039901.10, intron 15 of 20) protein_coding-intron (ENSMUSG00000039901.10, intron 15 of 25) -7550 ENSMUSG00000039901.10 ENSMUSG00000039901 ENSMUST00000236730 Armh3 protein_coding Interval_174090 chrX 134612147 134613092 + 0 NA Intergenic Intergenic 11394 ENSMUSG00000045427.13 ENSMUSG00000045427 ENSMUST00000059297 Hnrnph2 protein_coding Interval_50834 chr14 20127112 20128631 + 0 NA intron (ENSMUSG00000045107.5, intron 1 of 1) protein_coding-intron (ENSMUSG00000045107.5, intron 1 of 1) 10663 ENSMUSG00000045107.5 ENSMUSG00000045107 ENSMUST00000226090 Saysd1 protein_coding Interval_83423 chr18 85162675 85163113 + 0 NA Intergenic Intergenic 91058 ENSMUSG00000118198.1 ENSMUSG00000118198 ENSMUST00000237500 Gm50370 lincRNA Interval_12656 chr10 4177066 4177358 + 0 NA Intergenic Intergenic 7325 ENSMUSG00000089473.1 ENSMUSG00000089473 ENSMUST00000158848 Gm25369 snoRNA Interval_16806 chr10 68262252 68262862 + 0 NA intron (ENSMUSG00000019947.10, intron 2 of 9) protein_coding-intron (ENSMUSG00000019947.10, intron 2 of 10) 16183 ENSMUSG00000019947.10 ENSMUSG00000019947 ENSMUST00000218425 Arid5b protein_coding Interval_89353 chr2 19671497 19672937 + 0 NA Intergenic Intergenic -5034 ENSMUSG00000083893.1 ENSMUSG00000083893 ENSMUST00000120298 Gm13347 processed_pseudogene Interval_160395 chr8 108923723 108924252 + 0 NA intron (ENSMUSG00000038872.10, intron 11 of 15) protein_coding-intron (ENSMUSG00000038872.10, intron 5 of 9) -2113 ENSMUSG00000093697.1 ENSMUSG00000093697 ENSMUST00000175846 Gm20686 antisense Interval_69706 chr16 95696341 95696685 + 0 NA Intergenic Intergenic -5942 ENSMUSG00000022895.16 ENSMUSG00000022895 ENSMUST00000233578 Ets2 protein_coding Interval_127208 chr5 101334063 101334522 + 0 NA Intergenic Intergenic 28714 ENSMUSG00000105965.1 ENSMUSG00000105965 ENSMUST00000197114 Cycs-ps2 processed_pseudogene Interval_55629 chr14 96760746 96762610 + 0 NA Intergenic Intergenic -61069 ENSMUSG00000115315.1 ENSMUSG00000115315 ENSMUST00000228771 Gnb1-ps2 processed_pseudogene Interval_75554 chr17 67981428 67982099 + 0 NA intron (ENSMUSG00000024043.13, intron 1 of 17) protein_coding-intron (ENSMUSG00000024043.13, intron 1 of 17) -108715 ENSMUSG00000024043.13 ENSMUSG00000024043 ENSMUST00000170581 Arhgap28 protein_coding Interval_97687 chr2 142787337 142788556 + 0 NA TTS (ENSMUSG00000088134.1) snoRNA-TTS (ENSMUSG00000088134.1) 1050 ENSMUSG00000088134.1 ENSMUSG00000088134 ENSMUST00000157509 Gm22310 snoRNA Interval_173931 chrX 113164193 113164499 + 0 NA intron (ENSMUSG00000025531.14, intron 1 of 12) protein_coding-intron (ENSMUSG00000025531.14, intron 1 of 14) 62974 ENSMUSG00000081831.1 ENSMUSG00000081831 ENSMUST00000121476 Gm7405 processed_pseudogene Interval_164962 chr9 43447105 43447606 + 0 NA Intergenic Intergenic -2917 ENSMUSG00000111829.1 ENSMUSG00000111829 ENSMUST00000216533 Gm47475 lincRNA Interval_19149 chr10 95138028 95138940 + 0 NA intron (ENSMUSG00000112481.1, intron 2 of 3) lincRNA-intron (ENSMUSG00000112481.1, intron 2 of 3) -1610 ENSMUSG00000112501.1 ENSMUSG00000112501 ENSMUST00000217798 Gm33091 lincRNA Interval_81908 chr18 65764105 65764823 + 0 NA Intergenic Intergenic -36091 ENSMUSG00000024516.13 ENSMUSG00000024516 ENSMUST00000235765 Sec11c protein_coding Interval_21972 chr11 5489480 5489861 + 0 NA Intergenic Intergenic 5776 ENSMUSG00000085232.3 ENSMUSG00000085232 ENSMUST00000145746 Gm11962 processed_pseudogene Interval_139213 chr6 97232043 97232580 + 0 NA intron (ENSMUSG00000035199.6, intron 2 of 2) protein_coding-intron (ENSMUSG00000035199.6, intron 2 of 2) 20448 ENSMUSG00000044086.8 ENSMUSG00000044086 ENSMUST00000095655 Lmod3 protein_coding Interval_65876 chr16 29981732 29983327 + 0 NA Intergenic Intergenic -3345 ENSMUSG00000075286.4 ENSMUSG00000075286 ENSMUST00000100016 Gm1968 lincRNA Interval_142293 chr6 140483939 140484534 + 0 NA intron (ENSMUSG00000030231.11, intron 1 of 9) protein_coding-intron (ENSMUSG00000030231.11, intron 3 of 30) -46727 ENSMUSG00000084477.1 ENSMUSG00000084477 ENSMUST00000122528 Gm25780 misc_RNA Interval_92963 chr2 69002802 69003156 + 0 NA intron (ENSMUSG00000027035.10, intron 4 of 10) protein_coding-intron (ENSMUSG00000027035.10, intron 4 of 9) -10633 ENSMUSG00000103546.1 ENSMUSG00000103546 ENSMUST00000194110 Gm37666 TEC Interval_109455 chr3 142620419 142621596 + 0 NA intron (ENSMUSG00000028270.12, intron 1 of 5) protein_coding-intron (ENSMUSG00000028270.12, intron 1 of 10) 372 ENSMUSG00000028270.12 ENSMUSG00000028270 ENSMUST00000169572 Gbp2 protein_coding Interval_107400 chr3 107314980 107315701 + 0 NA Intergenic Intergenic 17761 ENSMUSG00000048109.10 ENSMUSG00000048109 ENSMUST00000197769 Rbm15 protein_coding Interval_92226 chr2 57151389 57152082 + 0 NA intron (ENSMUSG00000084938.1, intron 1 of 2) processed_transcript-intron (ENSMUSG00000084938.1, intron 1 of 2) -27732 ENSMUSG00000026826.13 ENSMUSG00000026826 ENSMUST00000128776 Nr4a2 protein_coding Interval_167083 chr9 65140635 65142571 + 0 NA intron (ENSMUSG00000032394.6, intron 1 of 13) protein_coding-intron (ENSMUSG00000032394.6, intron 1 of 13) 391 ENSMUSG00000032394.6 ENSMUSG00000032394 ENSMUST00000217135 Igdcc3 protein_coding Interval_93789 chr2 76899802 76900229 + 0 NA exon (ENSMUSG00000051747.15, exon 54 of 347) protein_coding-exon (ENSMUSG00000051747.15, exon 54 of 347) -63201 ENSMUSG00000051747.15 ENSMUSG00000051747 ENSMUST00000147048 Ttn protein_coding Interval_108688 chr3 130103303 130103880 + 0 NA Intergenic Intergenic 22812 ENSMUSG00000106072.1 ENSMUSG00000106072 ENSMUST00000199883 Gm42663 processed_pseudogene Interval_97833 chr2 144333150 144333434 + 0 NA TTS (ENSMUSG00000084837.1) antisense-TTS (ENSMUSG00000084837.1) 1833 ENSMUSG00000084837.1 ENSMUSG00000084837 ENSMUST00000153051 1700108N11Rik antisense Interval_34132 chr11 120816257 120816446 + 0 NA promoter-TSS (ENSMUSG00000025153.9) protein_coding-promoter-TSS (ENSMUSG00000025153.9) -896 ENSMUSG00000025153.9 ENSMUSG00000025153 ENSMUST00000205905 Fasn protein_coding Interval_52606 chr14 47835082 47835940 + 0 NA Intergenic Intergenic -30192 ENSMUSG00000115215.1 ENSMUSG00000115215 ENSMUST00000226360 Gm41148 lincRNA Interval_154088 chr8 12579032 12580552 + 0 NA exon (ENSMUSG00000010435.7, exon 2 of 8) protein_coding-exon (ENSMUSG00000010435.7, exon 2 of 8) -6472 ENSMUSG00000097421.2 ENSMUSG00000097421 ENSMUST00000180858 D630011A20Rik bidirectional_promoter_lncRNA Interval_125851 chr5 75030907 75031225 + 0 NA intron (ENSMUSG00000029229.8, intron 1 of 4) protein_coding-intron (ENSMUSG00000029229.8, intron 1 of 5) -7985 ENSMUSG00000107205.1 ENSMUSG00000107205 ENSMUST00000202336 Gm42576 TEC Interval_157400 chr8 70129579 70129849 + 0 NA Intergenic Intergenic -1633 ENSMUSG00000071078.6 ENSMUSG00000071078 ENSMUST00000212851 Nr2c2ap protein_coding Interval_44423 chr13 44762876 44763403 + 0 NA intron (ENSMUSG00000038518.15, intron 2 of 4) protein_coding-intron (ENSMUSG00000038518.15, intron 2 of 18) 31769 ENSMUSG00000038518.15 ENSMUSG00000038518 ENSMUST00000173003 Jarid2 protein_coding Interval_169830 chr9 102267334 102268090 + 0 NA intron (ENSMUSG00000032537.15, intron 1 of 4) protein_coding-intron (ENSMUSG00000032537.15, intron 1 of 15) -6024 ENSMUSG00000102702.1 ENSMUSG00000102702 ENSMUST00000193748 Gm37260 TEC Interval_79250 chr18 27641638 27641892 + 0 NA Intergenic Intergenic 43121 ENSMUSG00000046636.5 ENSMUSG00000046636 ENSMUST00000050143 Gm7729 unprocessed_pseudogene Interval_23472 chr11 22816768 22818202 + 0 NA intron (ENSMUSG00000051650.11, intron 1 of 5) protein_coding-intron (ENSMUSG00000051650.11, intron 1 of 5) -21814 ENSMUSG00000092455.1 ENSMUSG00000092455 ENSMUST00000174690 Gm20456 processed_transcript Interval_60427 chr15 73687245 73688078 + 0 NA Intergenic Intergenic 19844 ENSMUSG00000045281.5 ENSMUSG00000045281 ENSMUST00000064166 Gpr20 protein_coding Interval_75939 chr17 73262776 73264341 + 0 NA Intergenic Intergenic 11013 ENSMUSG00000117292.1 ENSMUSG00000117292 ENSMUST00000233479 E330032C10Rik lincRNA Interval_37645 chr12 70782899 70784626 + 0 NA intron (ENSMUSG00000113900.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000113900.1, intron 1 of 2) 41583 ENSMUSG00000113900.1 ENSMUSG00000113900 ENSMUST00000222338 Gm40437 lincRNA Interval_6649 chr1 118529286 118529670 + 0 NA intron (ENSMUSG00000064302.13, intron 16 of 32) protein_coding-intron (ENSMUSG00000064302.13, intron 22 of 39) 16761 ENSMUSG00000064302.13 ENSMUSG00000064302 ENSMUST00000187575 Clasp1 protein_coding Interval_121938 chr5 10320618 10321619 + 0 NA intron (ENSMUSG00000105157.1, intron 2 of 3) lincRNA-intron (ENSMUSG00000105157.1, intron 2 of 3) 72026 ENSMUSG00000105157.1 ENSMUSG00000105157 ENSMUST00000196240 Gm31831 lincRNA Interval_168997 chr9 90100804 90101447 + 0 NA TTS (ENSMUSG00000062270.14) protein_coding-TTS (ENSMUSG00000062270.14) 13534 ENSMUSG00000062270.14 ENSMUSG00000062270 ENSMUST00000185433 Morf4l1 protein_coding Interval_164840 chr9 42396089 42396375 + 0 NA intron (ENSMUSG00000037705.13, intron 2 of 23) protein_coding-intron (ENSMUSG00000037705.13, intron 2 of 23) 3495 ENSMUSG00000037705.13 ENSMUSG00000037705 ENSMUST00000160940 Tecta protein_coding Interval_154184 chr8 13258178 13258764 + 0 NA intron (ENSMUSG00000038506.13, intron 2 of 2) protein_coding-intron (ENSMUSG00000038506.13, intron 6 of 6) -4309 ENSMUSG00000031448.12 ENSMUSG00000031448 ENSMUST00000171619 Adprhl1 protein_coding Interval_5173 chr1 86234245 86235295 + 0 NA intron (ENSMUSG00000062590.13, intron 7 of 8) protein_coding-intron (ENSMUSG00000062590.13, intron 19 of 24) 66605 ENSMUSG00000087538.1 ENSMUSG00000087538 ENSMUST00000126385 Gm16341 antisense Interval_138227 chr6 86459872 86460175 + 0 NA intron (ENSMUSG00000046679.16, intron 8 of 10) protein_coding-intron (ENSMUSG00000046679.16, intron 7 of 9) 20807 ENSMUSG00000085589.7 ENSMUSG00000085589 ENSMUST00000154066 A430078I02Rik antisense Interval_107732 chr3 112162418 112162767 + 0 NA Intergenic Intergenic 36449 ENSMUSG00000089017.1 ENSMUSG00000089017 ENSMUST00000158392 Gm25519 snoRNA Interval_112505 chr4 41670068 41670611 + 0 NA TTS (ENSMUSG00000028444.17) protein_coding-TTS (ENSMUSG00000028444.17) -6305 ENSMUSG00000028444.17 ENSMUSG00000028444 ENSMUST00000145379 Cntfr protein_coding Interval_127529 chr5 104845926 104846634 + 0 NA intron (ENSMUSG00000072774.10, intron 1 of 1) protein_coding-intron (ENSMUSG00000072774.10, intron 1 of 4) 13513 ENSMUSG00000072774.10 ENSMUSG00000072774 ENSMUST00000191135 Zfp951 protein_coding Interval_97404 chr2 135797270 135797497 + 0 NA intron (ENSMUSG00000039943.16, intron 1 of 4) protein_coding-intron (ENSMUSG00000039943.16, intron 1 of 36) 15544 ENSMUSG00000086928.1 ENSMUSG00000086928 ENSMUST00000140949 Gm14210 lincRNA Interval_171624 chr9 119637048 119637346 + 0 NA intron (ENSMUSG00000034533.10, intron 15 of 26) protein_coding-intron (ENSMUSG00000034533.10, intron 16 of 27) 50842 ENSMUSG00000034533.10 ENSMUSG00000034533 ENSMUST00000213401 Scn10a protein_coding Interval_31712 chr11 102385126 102385475 + 0 NA Intergenic Intergenic -8280 ENSMUSG00000087330.1 ENSMUSG00000087330 ENSMUST00000126237 Bloodlinc lincRNA Interval_158503 chr8 84125870 84126160 + 0 NA promoter-TSS (ENSMUSG00000012889.8) protein_coding-promoter-TSS (ENSMUSG00000012889.8) -1803 ENSMUSG00000012889.8 ENSMUSG00000012889 ENSMUST00000147175 Podnl1 protein_coding Interval_31095 chr11 98101453 98101949 + 0 NA TTS (ENSMUSG00000020883.18) protein_coding-TTS (ENSMUSG00000020883.18) -16277 ENSMUSG00000084896.1 ENSMUSG00000084896 ENSMUST00000145489 Gm11632 processed_transcript Interval_165897 chr9 54416215 54416657 + 0 NA exon (ENSMUSG00000041268.17, exon 18 of 44) protein_coding-exon (ENSMUSG00000041268.17, exon 18 of 44) -34543 ENSMUSG00000041268.17 ENSMUSG00000041268 ENSMUST00000149709 Dmxl2 protein_coding Interval_12833 chr10 6007857 6008052 + 0 NA Intergenic Intergenic -85568 ENSMUSG00000019775.17 ENSMUSG00000019775 ENSMUST00000019909 Rgs17 protein_coding Interval_42843 chr13 20288310 20288814 + 0 NA intron (ENSMUSG00000041112.17, intron 4 of 6) protein_coding-intron (ENSMUSG00000041112.17, intron 12 of 21) 5645 ENSMUSG00000041112.17 ENSMUSG00000041112 ENSMUST00000180767 Elmo1 protein_coding Interval_127399 chr5 103724040 103725756 + 0 NA intron (ENSMUSG00000029313.18, intron 2 of 6) protein_coding-intron (ENSMUSG00000029313.18, intron 2 of 6) -29666 ENSMUSG00000029313.18 ENSMUSG00000029313 ENSMUST00000152145 Aff1 protein_coding Interval_39304 chr12 86541741 86542016 + 0 NA Intergenic Intergenic 71761 ENSMUSG00000021255.17 ENSMUSG00000021255 ENSMUST00000136464 Esrrb protein_coding Interval_82172 chr18 68299613 68301005 + 0 NA promoter-TSS (ENSMUSG00000009535.13) protein_coding-promoter-TSS (ENSMUSG00000009535.13) -89 ENSMUSG00000009535.13 ENSMUSG00000009535 ENSMUST00000148937 Rnmt protein_coding Interval_141855 chr6 134947179 134948101 + 0 NA intron (ENSMUSG00000098318.7, intron 2 of 2) lincRNA-intron (ENSMUSG00000098318.7, intron 1 of 1) -17528 ENSMUSG00000107730.1 ENSMUSG00000107730 ENSMUST00000203300 Gm44238 lincRNA Interval_129499 chr5 120578896 120580005 + 0 NA intron (ENSMUSG00000032741.9, intron 2 of 14) protein_coding-intron (ENSMUSG00000032741.9, intron 2 of 27) 9144 ENSMUSG00000032741.9 ENSMUSG00000032741 ENSMUST00000201601 Tpcn1 protein_coding Interval_77806 chr18 3846824 3848358 + 0 NA Intergenic Intergenic 10989 ENSMUSG00000117463.1 ENSMUSG00000117463 ENSMUST00000234895 Rpl7a-ps6 processed_pseudogene Interval_31935 chr11 103945969 103946191 + 0 NA intron (ENSMUSG00000034187.18, intron 1 of 8) protein_coding-intron (ENSMUSG00000034187.18, intron 1 of 20) -33509 ENSMUSG00000062421.13 ENSMUSG00000062421 ENSMUST00000154089 Arf2 protein_coding Interval_62444 chr15 93005425 93006901 + 0 NA intron (ENSMUSG00000109770.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000109770.1, intron 1 of 1) 3831 ENSMUSG00000109770.1 ENSMUSG00000109770 ENSMUST00000209724 Gm30085 lincRNA Interval_146503 chr7 46477173 46478047 + 0 NA intron (ENSMUSG00000030839.12, intron 3 of 3) protein_coding-intron (ENSMUSG00000030839.12, intron 10 of 10) 27197 ENSMUSG00000094229.1 ENSMUSG00000094229 ENSMUST00000179018 Gm22969 snRNA Interval_160191 chr8 107040720 107042341 + 0 NA promoter-TSS (ENSMUSG00000031913.9) protein_coding-promoter-TSS (ENSMUSG00000031913.9) 2511 ENSMUSG00000031913.9 ENSMUSG00000031913 ENSMUST00000132096 Vps4a protein_coding Interval_147023 chr7 58588458 58588781 + 0 NA Intergenic Intergenic 33699 ENSMUSG00000108877.1 ENSMUSG00000108877 ENSMUST00000208729 Gm45157 processed_pseudogene Interval_129949 chr5 123258574 123259508 + 0 NA intron (ENSMUSG00000029442.18, intron 3 of 21) protein_coding-intron (ENSMUSG00000029442.18, intron 3 of 21) -3228 ENSMUSG00000094664.1 ENSMUSG00000094664 ENSMUST00000148282 Rpl35a-ps6 processed_pseudogene Interval_99273 chr2 158595027 158595531 + 0 NA TTS (ENSMUSG00000086496.1) processed_transcript-TTS (ENSMUSG00000086496.1) 15311 ENSMUSG00000086496.1 ENSMUSG00000086496 ENSMUST00000155319 Gm14204 processed_transcript Interval_115920 chr4 106296466 106296819 + 0 NA Intergenic Intergenic -2249 ENSMUSG00000104192.1 ENSMUSG00000104192 ENSMUST00000195679 Gm37253 TEC Interval_3296 chr1 55852492 55853024 + 0 NA Intergenic Intergenic -78483 ENSMUSG00000099950.1 ENSMUSG00000099950 ENSMUST00000188040 9130227L01Rik lincRNA Interval_168566 chr9 83615769 83617243 + 0 NA intron (ENSMUSG00000032261.16, intron 3 of 3) protein_coding-intron (ENSMUSG00000032261.16, intron 2 of 2) -43217 ENSMUSG00000110950.1 ENSMUSG00000110950 ENSMUST00000213703 Gm39384 lincRNA Interval_157364 chr8 69887159 69888964 + 0 NA promoter-TSS (ENSMUSG00000044006.8) protein_coding-promoter-TSS (ENSMUSG00000044006.8) -374 ENSMUSG00000044006.8 ENSMUSG00000044006 ENSMUST00000057831 Cilp2 protein_coding Interval_96371 chr2 122034356 122034879 + 0 NA intron (ENSMUSG00000027236.8, intron 2 of 7) protein_coding-intron (ENSMUSG00000027236.8, intron 2 of 7) 5965 ENSMUSG00000027236.8 ENSMUSG00000027236 ENSMUST00000142747 Eif3j1 protein_coding Interval_76088 chr17 74842153 74842383 + 0 NA intron (ENSMUSG00000024078.7, intron 10 of 13) protein_coding-intron (ENSMUSG00000024078.7, intron 16 of 19) 18666 ENSMUSG00000117441.1 ENSMUSG00000117441 ENSMUST00000234097 Gm50021 antisense Interval_1817 chr1 33982940 33983332 + 0 NA intron (ENSMUSG00000026131.20, intron 3 of 102) protein_coding-intron (ENSMUSG00000026131.20, intron 3 of 102) -1634 ENSMUSG00000084506.1 ENSMUSG00000084506 ENSMUST00000122557 Gm23792 snRNA Interval_25401 chr11 47495732 47496556 + 0 NA intron (ENSMUSG00000020354.15, intron 2 of 2) protein_coding-intron (ENSMUSG00000020354.15, intron 1 of 6) -45288 ENSMUSG00000082792.1 ENSMUSG00000082792 ENSMUST00000121420 Gm12176 processed_pseudogene Interval_49911 chr13 118176236 118176502 + 0 NA Intergenic Intergenic 129049 ENSMUSG00000114713.1 ENSMUSG00000114713 ENSMUST00000225643 Gm9633 processed_pseudogene Interval_115703 chr4 102705628 102706361 + 0 NA Intergenic Intergenic -30818 ENSMUSG00000077260.1 ENSMUSG00000077260 ENSMUST00000104072 Gm24869 snoRNA Interval_34644 chr12 8312924 8314040 + 0 NA promoter-TSS (ENSMUSG00000020605.9) protein_coding-promoter-TSS (ENSMUSG00000020605.9) -4129 ENSMUSG00000020605.9 ENSMUSG00000020605 ENSMUST00000220300 Hs1bp3 protein_coding Interval_97051 chr2 130796638 130797301 + 0 NA intron (ENSMUSG00000027309.18, intron 8 of 20) protein_coding-intron (ENSMUSG00000027309.18, intron 8 of 36) 7013 ENSMUSG00000089662.1 ENSMUSG00000089662 ENSMUST00000120631 Gm14057 transcribed_processed_pseudogene Interval_125669 chr5 73158538 73158852 + 0 NA TTS (ENSMUSG00000086376.2) antisense-TTS (ENSMUSG00000086376.2) 1681 ENSMUSG00000086376.2 ENSMUSG00000086376 ENSMUST00000146728 1700071G01Rik antisense Interval_19228 chr10 95622148 95624350 + 0 NA Intergenic Intergenic 8990 ENSMUSG00000112439.1 ENSMUSG00000112439 ENSMUST00000219656 Gm33336 lincRNA Interval_97094 chr2 131186416 131187678 + 0 NA promoter-TSS (ENSMUSG00000027330.16) protein_coding-promoter-TSS (ENSMUSG00000027330.16) -5827 ENSMUSG00000027330.16 ENSMUSG00000027330 ENSMUST00000145556 Cdc25b protein_coding Interval_113263 chr4 52557223 52558074 + 0 NA Intergenic Intergenic -49558 ENSMUSG00000028314.6 ENSMUSG00000028314 ENSMUST00000107671 Toporsl protein_coding Interval_171030 chr9 113812018 113812577 + 0 NA promoter-TSS (ENSMUSG00000033392.16) protein_coding-promoter-TSS (ENSMUSG00000033392.16) -35999 ENSMUSG00000087992.1 ENSMUSG00000087992 ENSMUST00000157367 Gm25059 snoRNA Interval_118852 chr4 134065580 134065854 + 0 NA promoter-TSS (ENSMUSG00000012123.17) protein_coding-promoter-TSS (ENSMUSG00000012123.17) 4902 ENSMUSG00000012123.17 ENSMUSG00000012123 ENSMUST00000143295 Crybg2 protein_coding Interval_134390 chr6 28142244 28142537 + 0 NA Intergenic Intergenic -8005 ENSMUSG00000024211.15 ENSMUSG00000024211 ENSMUST00000202861 Grm8 protein_coding Interval_47608 chr13 89965954 89966266 + 0 NA intron (ENSMUSG00000021615.13, intron 6 of 8) protein_coding-intron (ENSMUSG00000021615.13, intron 6 of 7) -38567 ENSMUSG00000089070.1 ENSMUSG00000089070 ENSMUST00000158445 Gm24498 snRNA Interval_24930 chr11 41591374 41591635 + 0 NA exon (ENSMUSG00000081847.1, exon 1 of 2) processed_pseudogene-exon (ENSMUSG00000081847.1, exon 1 of 2) 382 ENSMUSG00000081847.1 ENSMUSG00000081847 ENSMUST00000117114 Gm12142 processed_pseudogene Interval_148456 chr7 81356404 81357199 + 0 NA promoter-TSS (ENSMUSG00000025586.17) protein_coding-promoter-TSS (ENSMUSG00000025586.17) -11574 ENSMUSG00000061787.15 ENSMUSG00000061787 ENSMUST00000138936 Rps17 protein_coding Interval_45724 chr13 57308136 57308753 + 0 NA Intergenic Intergenic 31766 ENSMUSG00000114411.1 ENSMUSG00000114411 ENSMUST00000224461 Gm48176 processed_pseudogene Interval_156507 chr8 48809904 48812908 + 0 NA intron (ENSMUSG00000031561.16, intron 1 of 2) protein_coding-intron (ENSMUSG00000031561.16, intron 1 of 2) -32316 ENSMUSG00000100706.6 ENSMUSG00000100706 ENSMUST00000188936 Gm19744 processed_transcript Interval_148748 chr7 85104098 85104940 + 0 NA Intergenic Intergenic 15751 ENSMUSG00000092199.1 ENSMUSG00000092199 ENSMUST00000173179 Gm18358 unprocessed_pseudogene Interval_80024 chr18 36701925 36702675 + 0 NA Intergenic Intergenic -8727 ENSMUSG00000044719.5 ENSMUSG00000044719 ENSMUST00000235134 E230025N22Rik protein_coding Interval_88918 chr2 12880024 12881149 + 0 NA Intergenic Intergenic -97353 ENSMUSG00000026730.12 ENSMUSG00000026730 ENSMUST00000195521 Pter protein_coding Interval_138867 chr6 92757233 92757565 + 0 NA Intergenic Intergenic -70233 ENSMUSG00000048636.7 ENSMUSG00000048636 ENSMUST00000133858 A730049H05Rik protein_coding Interval_240 KZ289068.1 272781 274380 + 0 NA NA NA NA NA Interval_38608 chr12 80492366 80493668 + 0 NA intron (ENSMUSG00000032705.9, intron 2 of 2) protein_coding-intron (ENSMUSG00000032705.9, intron 8 of 8) 2127 ENSMUSG00000032705.9 ENSMUSG00000032705 ENSMUST00000219757 Exd2 protein_coding Interval_94369 chr2 90554518 90555168 + 0 NA intron (ENSMUSG00000025314.16, intron 1 of 23) protein_coding-intron (ENSMUSG00000025314.16, intron 1 of 23) 25804 ENSMUSG00000025314.16 ENSMUSG00000025314 ENSMUST00000168621 Ptprj protein_coding Interval_66710 chr16 36526719 36527147 + 0 NA intron (ENSMUSG00000051980.13, intron 2 of 2) protein_coding-intron (ENSMUSG00000051980.13, intron 1 of 6) -14283 ENSMUSG00000089118.1 ENSMUSG00000089118 ENSMUST00000158493 Gm25902 misc_RNA Interval_96067 chr2 119558788 119559872 + 0 NA promoter-TSS (ENSMUSG00000014077.13) protein_coding-promoter-TSS (ENSMUSG00000014077.13) 11518 ENSMUSG00000014077.13 ENSMUSG00000014077 ENSMUST00000137585 Chp1 protein_coding Interval_88059 chr19 58622451 58622677 + 0 NA intron (ENSMUSG00000100001.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000100001.1, intron 1 of 2) 16235 ENSMUSG00000100001.1 ENSMUSG00000100001 ENSMUST00000187629 1810007D17Rik lincRNA Interval_44727 chr13 47917530 47917775 + 0 NA intron (ENSMUSG00000114959.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000114959.1, intron 1 of 2) 7217 ENSMUSG00000114959.1 ENSMUSG00000114959 ENSMUST00000223677 G630093K05Rik lincRNA Interval_102200 chr3 19406461 19406873 + 0 NA Intergenic Intergenic 75894 ENSMUSG00000089149.1 ENSMUSG00000089149 ENSMUST00000158524 Gm22282 misc_RNA Interval_67391 chr16 48282853 48284769 + 0 NA promoter-TSS (ENSMUSG00000058550.15) protein_coding-promoter-TSS (ENSMUSG00000058550.15) 78 ENSMUSG00000058550.15 ENSMUSG00000058550 ENSMUST00000050705 Dppa4 protein_coding Interval_8109 chr1 135771049 135771798 + 0 NA Intergenic Intergenic 4289 ENSMUSG00000041801.5 ENSMUSG00000041801 ENSMUST00000136445 Phlda3 protein_coding Interval_133966 chr6 16933231 16933843 + 0 NA Intergenic Intergenic 8306 ENSMUSG00000081744.1 ENSMUSG00000081744 ENSMUST00000119845 Gm5721 processed_pseudogene Interval_115480 chr4 99296090 99297123 + 0 NA exon (ENSMUSG00000070891.2, exon 1 of 1) protein_coding-exon (ENSMUSG00000070891.2, exon 1 of 1) 706 ENSMUSG00000070891.2 ENSMUSG00000070891 ENSMUST00000094955 Gm12689 protein_coding Interval_137090 chr6 67281354 67281997 + 0 NA exon (ENSMUSG00000036371.6, exon 7 of 8) protein_coding-exon (ENSMUSG00000036371.6, exon 7 of 8) 14670 ENSMUSG00000036371.6 ENSMUSG00000036371 ENSMUST00000204206 Serbp1 protein_coding Interval_94948 chr2 102113266 102113737 + 0 NA exon (ENSMUSG00000048058.17, exon 2 of 2) protein_coding-exon (ENSMUSG00000048058.17, exon 2 of 2) 24618 ENSMUSG00000048058.17 ENSMUSG00000048058 ENSMUST00000127888 Ldlrad3 protein_coding Interval_86497 chr19 41104915 41105357 + 0 NA intron (ENSMUSG00000025013.15, intron 11 of 20) protein_coding-intron (ENSMUSG00000025013.15, intron 11 of 20) -37013 ENSMUSG00000050121.9 ENSMUSG00000050121 ENSMUST00000087176 Opalin protein_coding Interval_73881 chr17 45209417 45209782 + 0 NA promoter-TSS (ENSMUSG00000096425.1) miRNA-promoter-TSS (ENSMUSG00000096425.1) -367 ENSMUSG00000096425.1 ENSMUSG00000096425 ENSMUST00000178626 Gm24979 miRNA Interval_9800 chr1 162511309 162511507 + 0 NA Intergenic Intergenic 33728 ENSMUSG00000066752.4 ENSMUSG00000066752 ENSMUST00000159707 Gm10176 TEC Interval_103949 chr3 55415577 55416202 + 0 NA intron (ENSMUSG00000027797.15, intron 2 of 4) protein_coding-intron (ENSMUSG00000027797.15, intron 4 of 16) -14865 ENSMUSG00000105975.4 ENSMUSG00000105975 ENSMUST00000196877 Gm42609 antisense Interval_114550 chr4 82446947 82447747 + 0 NA intron (ENSMUSG00000008575.17, intron 2 of 4) protein_coding-intron (ENSMUSG00000008575.17, intron 2 of 11) 7937 ENSMUSG00000084595.1 ENSMUSG00000084595 ENSMUST00000122646 n-R5s188 rRNA Interval_84255 chr19 9044266 9045100 + 0 NA intron (ENSMUSG00000069833.13, intron 5 of 5) protein_coding-intron (ENSMUSG00000069833.13, intron 5 of 5) 43275 ENSMUSG00000024653.2 ENSMUSG00000024653 ENSMUST00000025554 Scgb1a1 protein_coding Interval_83986 chr19 5952745 5953093 + 0 NA promoter-TSS (ENSMUSG00000024833.15) protein_coding-promoter-TSS (ENSMUSG00000024833.15) 11250 ENSMUSG00000024833.15 ENSMUSG00000024833 ENSMUST00000238043 Pola2 protein_coding Interval_83988 chr19 5956229 5957169 + 0 NA TTS (ENSMUSG00000024833.15) protein_coding-TTS (ENSMUSG00000024833.15) 7470 ENSMUSG00000024833.15 ENSMUSG00000024833 ENSMUST00000238043 Pola2 protein_coding Interval_69272 chr16 91830060 91830764 + 0 NA exon (ENSMUSG00000022957.20, exon 16 of 16) protein_coding-exon (ENSMUSG00000022957.20, exon 16 of 16) -73651 ENSMUSG00000022957.20 ENSMUSG00000022957 ENSMUST00000137575 Itsn1 protein_coding Interval_152710 chr7 136688435 136689489 + 0 NA intron (ENSMUSG00000110101.1, intron 4 of 5) lincRNA-intron (ENSMUSG00000110101.1, intron 4 of 5) 21642 ENSMUSG00000110101.1 ENSMUSG00000110101 ENSMUST00000211142 Gm6249 lincRNA Interval_90860 chr2 33017968 33018951 + 0 NA TTS (ENSMUSG00000038860.15) protein_coding-TTS (ENSMUSG00000038860.15) -16144 ENSMUSG00000104277.1 ENSMUSG00000104277 ENSMUST00000193214 Gm38299 TEC Interval_74539 chr17 53149284 53149588 + 0 NA Intergenic Intergenic -47015 ENSMUSG00000117244.1 ENSMUSG00000117244 ENSMUST00000233156 Gm9210 processed_pseudogene Interval_89918 chr2 26483015 26483884 + 0 NA intron (ENSMUSG00000026923.15, intron 4 of 33) protein_coding-intron (ENSMUSG00000026923.15, intron 4 of 33) -13330 ENSMUSG00000098548.1 ENSMUSG00000098548 ENSMUST00000183922 Mir6996 miRNA Interval_39253 chr12 86211066 86211851 + 0 NA Intergenic Intergenic 42117 ENSMUSG00000097543.1 ENSMUSG00000097543 ENSMUST00000181667 Gm805 lincRNA Interval_46718 chr13 69598604 69598919 + 0 NA intron (ENSMUSG00000021594.11, intron 2 of 4) protein_coding-intron (ENSMUSG00000021594.11, intron 2 of 3) -3932 ENSMUSG00000021594.11 ENSMUSG00000021594 ENSMUST00000059235 Srd5a1 protein_coding Interval_157697 chr8 72353091 72354889 + 0 NA intron (ENSMUSG00000006276.10, intron 5 of 5) protein_coding-intron (ENSMUSG00000006276.10, intron 5 of 5) 34957 ENSMUSG00000055148.7 ENSMUSG00000055148 ENSMUST00000067912 Klf2 protein_coding Interval_53244 chr14 55539857 55541005 + 0 NA promoter-TSS (ENSMUSG00000040618.7) protein_coding-promoter-TSS (ENSMUSG00000040618.7) 1968 ENSMUSG00000115778.1 ENSMUSG00000115778 ENSMUST00000228843 Gm10876 antisense Interval_33762 chr11 118341433 118342790 + 0 NA intron (ENSMUSG00000076433.4, intron 1 of 2) protein_coding-intron (ENSMUSG00000017466.9, intron 1 of 4) -8095 ENSMUSG00000076433.4 ENSMUSG00000076433 ENSMUST00000168100 Cep295nl protein_coding Interval_64355 chr16 10761217 10761668 + 0 NA Intergenic Intergenic 24094 ENSMUSG00000038037.5 ENSMUSG00000038037 ENSMUST00000038099 Socs1 protein_coding Interval_5511 chr1 89462114 89462385 + 0 NA intron (ENSMUSG00000055013.16, intron 1 of 16) protein_coding-intron (ENSMUSG00000055013.16, intron 1 of 17) -21189 ENSMUSG00000104114.1 ENSMUSG00000104114 ENSMUST00000192974 Gm37297 TEC Interval_135516 chr6 39824484 39824693 + 0 NA Intergenic Intergenic 4185 ENSMUSG00000106936.1 ENSMUSG00000106936 ENSMUST00000202282 Gm7554 processed_pseudogene Interval_69160 chr16 91056274 91057034 + 0 NA TTS (ENSMUSG00000085398.1) antisense-TTS (ENSMUSG00000085398.1) 11998 ENSMUSG00000085398.1 ENSMUSG00000085398 ENSMUST00000147848 4931406G06Rik antisense Interval_153438 chr7 144797983 144798908 + 0 NA Intergenic Intergenic 6449 ENSMUSG00000108874.1 ENSMUSG00000108874 ENSMUST00000208857 Gm9711 processed_pseudogene Interval_77988 chr18 6465001 6465754 + 0 NA intron (ENSMUSG00000024240.13, intron 1 of 13) protein_coding-intron (ENSMUSG00000024240.13, intron 1 of 13) -23483 ENSMUSG00000024240.13 ENSMUSG00000024240 ENSMUST00000050542 Epc1 protein_coding Interval_115601 chr4 101320841 101321044 + 0 NA intron (ENSMUSG00000085721.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000085721.1, intron 1 of 2) 803 ENSMUSG00000085721.1 ENSMUSG00000085721 ENSMUST00000131864 Gm12796 lincRNA Interval_28312 chr11 75133556 75134271 + 0 NA intron (ENSMUSG00000038290.15, intron 1 of 1) protein_coding-intron (ENSMUSG00000038290.15, intron 13 of 18) -25720 ENSMUSG00000038290.15 ENSMUSG00000038290 ENSMUST00000153226 Smg6 protein_coding Interval_65795 chr16 28904684 28905092 + 0 NA intron (ENSMUSG00000051065.9, intron 1 of 1) protein_coding-intron (ENSMUSG00000051065.9, intron 1 of 1) 46467 ENSMUSG00000116861.1 ENSMUSG00000116861 ENSMUST00000232466 Gm8253 processed_pseudogene Interval_17414 chr10 76455063 76455644 + 0 NA intron (ENSMUSG00000009114.17, intron 5 of 7) protein_coding-intron (ENSMUSG00000009114.17, intron 5 of 7) 5026 ENSMUSG00000009114.17 ENSMUSG00000009114 ENSMUST00000105415 2610028H24Rik protein_coding Interval_66096 chr16 31574843 31575141 + 0 NA Intergenic Intergenic 18228 ENSMUSG00000116793.1 ENSMUSG00000116793 ENSMUST00000232216 Gm34256 lincRNA Interval_15726 chr10 54782100 54782583 + 0 NA Intergenic Intergenic -69304 ENSMUSG00000088987.1 ENSMUSG00000088987 ENSMUST00000158362 Gm25602 snRNA Interval_159352 chr8 93992477 93992680 + 0 NA intron (ENSMUSG00000031751.14, intron 4 of 13) protein_coding-intron (ENSMUSG00000031751.14, intron 4 of 13) 19549 ENSMUSG00000031751.14 ENSMUSG00000031751 ENSMUST00000143265 Amfr protein_coding Interval_64384 chr16 11016371 11016739 + 0 NA intron (ENSMUSG00000022500.15, intron 1 of 2) protein_coding-intron (ENSMUSG00000022500.15, intron 1 of 2) -15401 ENSMUSG00000115992.1 ENSMUSG00000115992 ENSMUST00000229764 Gm10832 lincRNA Interval_3482 chr1 58755901 58756155 + 0 NA TTS (ENSMUSG00000026031.15) protein_coding-TTS (ENSMUSG00000026031.15) -29181 ENSMUSG00000100236.1 ENSMUSG00000100236 ENSMUST00000191399 Gm3841 processed_pseudogene Interval_57825 chr15 22145503 22145828 + 0 NA Intergenic Intergenic -128405 ENSMUSG00000098700.1 ENSMUSG00000098700 ENSMUST00000184465 Gm27525 miRNA Interval_34830 chr12 12349384 12349688 + 0 NA intron (ENSMUSG00000020589.17, intron 4 of 12) protein_coding-intron (ENSMUSG00000020589.17, intron 3 of 11) 43079 ENSMUSG00000114136.1 ENSMUSG00000114136 ENSMUST00000220545 4921511I17Rik antisense Interval_63958 chr16 4831953 4832315 + 0 NA Intergenic Intergenic -32189 ENSMUSG00000022518.16 ENSMUSG00000022518 ENSMUST00000180939 4930562C15Rik protein_coding Interval_24285 chr11 32113139 32113621 + 0 NA Intergenic Intergenic -12152 ENSMUSG00000086386.1 ENSMUSG00000086386 ENSMUST00000145338 Gm12108 lincRNA Interval_123975 chr5 36958597 36959291 + 0 NA Intergenic Intergenic 18012 ENSMUSG00000039474.13 ENSMUSG00000039474 ENSMUST00000167937 Wfs1 protein_coding Interval_120272 chr4 145092028 145092503 + 0 NA promoter-TSS (ENSMUSG00000020220.16) protein_coding-promoter-TSS (ENSMUSG00000020220.16) 63221 ENSMUSG00000020220.16 ENSMUSG00000020220 ENSMUST00000132700 Vps13d protein_coding Interval_39911 chr12 99639674 99641451 + 0 NA exon (ENSMUSG00000113012.1, exon 1 of 1) TEC-exon (ENSMUSG00000113012.1, exon 1 of 1) 1362 ENSMUSG00000113012.1 ENSMUSG00000113012 ENSMUST00000221736 Gm47196 TEC Interval_76737 chr17 83752479 83753749 + 0 NA intron (ENSMUSG00000055817.18, intron 2 of 2) protein_coding-intron (ENSMUSG00000055817.18, intron 4 of 16) 23950 ENSMUSG00000055817.18 ENSMUSG00000055817 ENSMUST00000175920 Mta3 protein_coding Interval_170701 chr9 110172788 110173041 + 0 NA intron (ENSMUSG00000032481.17, intron 10 of 24) protein_coding-intron (ENSMUSG00000032481.17, intron 10 of 27) -51098 ENSMUSG00000105187.1 ENSMUSG00000105187 ENSMUST00000196828 Gm23377 snoRNA Interval_40721 chr12 107928313 107928576 + 0 NA intron (ENSMUSG00000048251.15, intron 1 of 1) protein_coding-intron (ENSMUSG00000048251.15, intron 3 of 3) 74970 ENSMUSG00000048251.15 ENSMUSG00000048251 ENSMUST00000109891 Bcl11b protein_coding Interval_31678 chr11 102206310 102207171 + 0 NA TTS (ENSMUSG00000008855.17) protein_coding-TTS (ENSMUSG00000008855.17) 14715 ENSMUSG00000034793.15 ENSMUSG00000034793 ENSMUST00000153178 G6pc3 protein_coding Interval_75536 chr17 67846794 67848449 + 0 NA intron (ENSMUSG00000024043.13, intron 17 of 17) protein_coding-intron (ENSMUSG00000024043.13, intron 17 of 17) 3442 ENSMUSG00000090955.1 ENSMUSG00000090955 ENSMUST00000166414 Gm17097 processed_pseudogene Interval_154748 chr8 23072128 23073418 + 0 NA intron (ENSMUSG00000031543.18, intron 2 of 45) protein_coding-intron (ENSMUSG00000031543.18, intron 2 of 44) 29323 ENSMUSG00000106605.1 ENSMUSG00000106605 ENSMUST00000197671 Gm44365 miRNA Interval_62756 chr15 96657739 96659210 + 0 NA Intergenic Intergenic -13319 ENSMUSG00000064928.1 ENSMUSG00000064928 ENSMUST00000082994 Gm22045 snRNA Interval_136380 chr6 53986069 53987926 + 0 NA intron (ENSMUSG00000108060.2, intron 1 of 1) processed_transcript-intron (ENSMUSG00000108060.2, intron 1 of 3) 8268 ENSMUSG00000108060.2 ENSMUSG00000108060 ENSMUST00000203047 4921529L05Rik processed_transcript Interval_65990 chr16 30759681 30759898 + 0 NA Intergenic Intergenic 33466 ENSMUSG00000116570.1 ENSMUSG00000116570 ENSMUST00000231445 Gm49754 lincRNA Interval_66024 chr16 31006760 31007673 + 0 NA TTS (ENSMUSG00000047434.14) protein_coding-TTS (ENSMUSG00000047434.14) -33698 ENSMUSG00000087605.1 ENSMUSG00000087605 ENSMUST00000123905 Gm15742 sense_intronic Interval_1345 chr1 20807686 20808268 + 0 NA intron (ENSMUSG00000041859.10, intron 12 of 15) protein_coding-intron (ENSMUSG00000041859.10, intron 12 of 16) -3044 ENSMUSG00000041859.10 ENSMUSG00000041859 ENSMUST00000190421 Mcm3 protein_coding Interval_170920 chr9 112130928 112131909 + 0 NA intron (ENSMUSG00000032503.18, intron 14 of 18) protein_coding-intron (ENSMUSG00000032503.18, intron 13 of 18) -12707 ENSMUSG00000065441.2 ENSMUSG00000065441 ENSMUST00000083507 Mir128-2 miRNA Interval_174541 chrX 157462533 157463386 + 0 NA intron (ENSMUSG00000071708.11, intron 4 of 9) protein_coding-intron (ENSMUSG00000071708.11, intron 4 of 10) -2098 ENSMUSG00000071708.11 ENSMUSG00000071708 ENSMUST00000123770 Sms protein_coding Interval_40686 chr12 107280957 107281492 + 0 NA Intergenic Intergenic -75158 ENSMUSG00000082362.1 ENSMUSG00000082362 ENSMUST00000117317 Gm5187 processed_pseudogene Interval_63271 chr15 100025055 100025344 + 0 NA Intergenic Intergenic -51912 ENSMUSG00000100084.2 ENSMUSG00000100084 ENSMUST00000188271 2310068J16Rik antisense Interval_156682 chr8 57182079 57183688 + 0 NA Intergenic Intergenic 109169 ENSMUSG00000110327.1 ENSMUSG00000110327 ENSMUST00000209260 Gm17994 processed_pseudogene Interval_1533 chr1 25005233 25005470 + 0 NA Intergenic Intergenic -6590 ENSMUSG00000100450.1 ENSMUSG00000100450 ENSMUST00000188406 Gm9443 processed_pseudogene Interval_76387 chr17 79817750 79819196 + 0 NA intron (ENSMUSG00000103091.1, intron 1 of 1) TEC-intron (ENSMUSG00000103091.1, intron 1 of 1) 6760 ENSMUSG00000117394.1 ENSMUSG00000117394 ENSMUST00000234236 1700106O07Rik lincRNA Interval_96283 chr2 121283070 121283853 + 0 NA Intergenic Intergenic -12002 ENSMUSG00000027254.13 ENSMUSG00000027254 ENSMUST00000133283 Map1a protein_coding Interval_48901 chr13 104572005 104572390 + 0 NA Intergenic Intergenic -112734 ENSMUSG00000084860.1 ENSMUSG00000084860 ENSMUST00000131215 2610204G07Rik antisense Interval_162417 chr8 128474015 128475253 + 0 NA intron (ENSMUSG00000025810.9, intron 9 of 16) protein_coding-intron (ENSMUSG00000025810.9, intron 9 of 16) 115237 ENSMUSG00000025810.9 ENSMUSG00000025810 ENSMUST00000212933 Nrp1 protein_coding Interval_144235 chr7 23472943 23473542 + 0 NA Intergenic Intergenic 14055 ENSMUSG00000092496.1 ENSMUSG00000092496 ENSMUST00000172853 Vmn1r-ps84 unprocessed_pseudogene Interval_64019 chr16 5365768 5366498 + 0 NA intron (ENSMUSG00000116029.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000116029.1, intron 1 of 2) -41976 ENSMUSG00000084573.1 ENSMUSG00000084573 ENSMUST00000122624 n-R5s30 rRNA Interval_87404 chr19 49019378 49019631 + 0 NA Intergenic Intergenic 27420 ENSMUSG00000117996.1 ENSMUSG00000117996 ENSMUST00000235703 Gm50441 lincRNA Interval_35267 chr12 19246272 19246565 + 0 NA Intergenic Intergenic 28336 ENSMUSG00000113110.1 ENSMUSG00000113110 ENSMUST00000221548 Gm48528 processed_pseudogene Interval_146724 chr7 49741160 49742222 + 0 NA Intergenic Intergenic -17424 ENSMUSG00000039745.8 ENSMUSG00000039745 ENSMUST00000207895 Htatip2 protein_coding Interval_117191 chr4 120396738 120397290 + 0 NA Intergenic Intergenic -8367 ENSMUSG00000000085.16 ENSMUSG00000000085 ENSMUST00000133169 Scmh1 protein_coding Interval_562 chr1 7387619 7388127 + 0 NA intron (ENSMUSG00000097797.6, intron 1 of 4) lincRNA-intron (ENSMUSG00000097797.6, intron 1 of 2) 9996 ENSMUSG00000097797.6 ENSMUSG00000097797 ENSMUST00000193428 Gm26901 lincRNA Interval_89395 chr2 20393769 20395480 + 0 NA intron (ENSMUSG00000036617.17, intron 2 of 3) protein_coding-intron (ENSMUSG00000036617.17, intron 3 of 7) 38310 ENSMUSG00000085477.7 ENSMUSG00000085477 ENSMUST00000149398 Gm13335 antisense Interval_93673 chr2 75749623 75749860 + 0 NA Intergenic Intergenic -19569 ENSMUSG00000087527.1 ENSMUSG00000087527 ENSMUST00000123829 Gm13656 lincRNA Interval_65956 chr16 30515151 30515698 + 0 NA intron (ENSMUSG00000022537.18, intron 9 of 9) protein_coding-intron (ENSMUSG00000022537.18, intron 11 of 11) 28073 ENSMUSG00000022537.18 ENSMUSG00000022537 ENSMUST00000153380 Tmem44 protein_coding Interval_157743 chr8 72679475 72680414 + 0 NA intron (ENSMUSG00000048148.18, intron 9 of 18) protein_coding-intron (ENSMUSG00000048148.18, intron 9 of 18) -4370 ENSMUSG00000093276.1 ENSMUSG00000093276 ENSMUST00000175535 Gm26237 miRNA Interval_87026 chr19 45615127 45616415 + 0 NA intron (ENSMUSG00000040913.11, intron 1 of 1) protein_coding-intron (ENSMUSG00000040913.11, intron 5 of 8) -23929 ENSMUSG00000040913.11 ENSMUSG00000040913 ENSMUST00000159590 Fbxw4 protein_coding Interval_171316 chr9 116316658 116317276 + 0 NA Intergenic Intergenic -14201 ENSMUSG00000110752.1 ENSMUSG00000110752 ENSMUST00000217456 D730003K21Rik lincRNA Interval_138143 chr6 85450880 85452519 + 0 NA promoter-TSS (ENSMUSG00000030008.9) protein_coding-promoter-TSS (ENSMUSG00000030008.9) -443 ENSMUSG00000030008.9 ENSMUSG00000030008 ENSMUST00000122907 Pradc1 protein_coding Interval_148116 chr7 79320341 79321211 + 0 NA intron (ENSMUSG00000039202.12, intron 3 of 5) protein_coding-intron (ENSMUSG00000039202.12, intron 3 of 10) 21751 ENSMUSG00000108460.1 ENSMUSG00000108460 ENSMUST00000205557 Gm39041 TEC Interval_24164 chr11 30844030 30844263 + 0 NA intron (ENSMUSG00000040850.17, intron 32 of 46) protein_coding-intron (ENSMUSG00000040850.17, intron 32 of 46) -21323 ENSMUSG00000040850.17 ENSMUSG00000040850 ENSMUST00000155719 Psme4 protein_coding Interval_66037 chr16 31100136 31100435 + 0 NA intron (ENSMUSG00000049076.12, intron 23 of 23) protein_coding-intron (ENSMUSG00000049076.12, intron 21 of 21) 4598 ENSMUSG00000049076.12 ENSMUSG00000049076 ENSMUST00000239132 Acap2 protein_coding Interval_154466 chr8 18406400 18406838 + 0 NA Intergenic Intergenic -72281 ENSMUSG00000110056.1 ENSMUSG00000110056 ENSMUST00000211704 1700014L14Rik lincRNA Interval_143904 chr7 17050767 17051223 + 0 NA promoter-TSS (ENSMUSG00000004328.15) protein_coding-promoter-TSS (ENSMUSG00000004328.15) -7539 ENSMUSG00000108807.1 ENSMUSG00000108807 ENSMUST00000206290 4833404L02Rik TEC Interval_8487 chr1 140028208 140028406 + 0 NA Intergenic Intergenic 20722 ENSMUSG00000103691.1 ENSMUSG00000103691 ENSMUST00000195133 Gm38019 processed_pseudogene Interval_88437 chr2 5062999 5064731 + 0 NA promoter-TSS (ENSMUSG00000026672.11) protein_coding-promoter-TSS (ENSMUSG00000026672.11) 26585 ENSMUSG00000086430.1 ENSMUSG00000086430 ENSMUST00000145585 4930551O13Rik antisense Interval_129031 chr5 116933264 116933493 + 0 NA Intergenic Intergenic -102858 ENSMUSG00000106909.1 ENSMUSG00000106909 ENSMUST00000201752 Gm43122 lincRNA Interval_27989 chr11 72002340 72003150 + 0 NA Intergenic Intergenic -20010 ENSMUSG00000080577.1 ENSMUSG00000080577 ENSMUST00000116927 Gm23226 snRNA Interval_46693 chr13 69331298 69332483 + 0 NA Intergenic Intergenic -13765 ENSMUSG00000098227.1 ENSMUSG00000098227 ENSMUST00000182847 Gm4812 processed_pseudogene Interval_120226 chr4 144544972 144545737 + 0 NA TTS (ENSMUSG00000082418.1) processed_pseudogene-TTS (ENSMUSG00000082418.1) 3214 ENSMUSG00000082418.1 ENSMUSG00000082418 ENSMUST00000117079 Gm13126 processed_pseudogene Interval_131586 chr5 138338909 138339404 + 0 NA Intergenic Intergenic -2805 ENSMUSG00000109713.1 ENSMUSG00000109713 ENSMUST00000211088 Pvrig protein_coding Interval_98612 chr2 153575005 153575768 + 0 NA Intergenic Intergenic 57345 ENSMUSG00000056941.17 ENSMUSG00000056941 ENSMUST00000109782 Commd7 protein_coding Interval_147369 chr7 66211267 66211627 + 0 NA Intergenic Intergenic 20892 ENSMUSG00000108686.1 ENSMUSG00000108686 ENSMUST00000206648 Gm45080 processed_pseudogene Interval_74457 chr17 50795267 50795911 + 0 NA intron (ENSMUSG00000023923.10, intron 17 of 21) protein_coding-intron (ENSMUSG00000023923.10, intron 17 of 21) 96901 ENSMUSG00000044645.8 ENSMUSG00000044645 ENSMUST00000061681 Gm7334 processed_pseudogene Interval_6292 chr1 105528108 105528352 + 0 NA intron (ENSMUSG00000056536.14, intron 9 of 9) protein_coding-intron (ENSMUSG00000056536.14, intron 28 of 28) 36348 ENSMUSG00000100672.1 ENSMUSG00000100672 ENSMUST00000190242 Gm28404 sense_intronic Interval_1289 chr1 19214022 19214800 + 0 NA TTS (ENSMUSG00000025927.13) protein_coding-TTS (ENSMUSG00000025927.13) 2105 ENSMUSG00000025927.13 ENSMUSG00000025927 ENSMUST00000186972 Tfap2b protein_coding Interval_160245 chr8 107424142 107425642 + 0 NA promoter-TSS (ENSMUSG00000003848.14) protein_coding-promoter-TSS (ENSMUSG00000003848.14) -3330 ENSMUSG00000003848.14 ENSMUSG00000003848 ENSMUST00000165266 Nob1 protein_coding Interval_9497 chr1 157940269 157940964 + 0 NA intron (ENSMUSG00000102789.1, intron 1 of 3) TEC-intron (ENSMUSG00000102789.1, intron 1 of 3) 231 ENSMUSG00000102789.1 ENSMUSG00000102789 ENSMUST00000192097 Gm38256 TEC Interval_15397 chr10 45446085 45446643 + 0 NA intron (ENSMUSG00000063804.8, intron 2 of 3) protein_coding-intron (ENSMUSG00000063804.8, intron 2 of 4) 40031 ENSMUSG00000063804.8 ENSMUSG00000063804 ENSMUST00000214555 Lin28b protein_coding Interval_36471 chr12 45443579 45444243 + 0 NA Intergenic Intergenic 14534 ENSMUSG00000092404.2 ENSMUSG00000092404 ENSMUST00000173293 Gm9921 lincRNA Interval_110956 chr4 10846024 10846348 + 0 NA promoter-TSS (ENSMUSG00000092880.1) miRNA-promoter-TSS (ENSMUSG00000092880.1) -556 ENSMUSG00000092880.1 ENSMUSG00000092880 ENSMUST00000175139 Mir3471-1 miRNA Interval_80307 chr18 39039737 39040075 + 0 NA intron (ENSMUSG00000036452.18, intron 1 of 22) protein_coding-intron (ENSMUSG00000036452.18, intron 1 of 22) -45714 ENSMUSG00000086991.1 ENSMUSG00000086991 ENSMUST00000131421 Gm15334 antisense Interval_155622 chr8 35240826 35241498 + 0 NA intron (ENSMUSG00000109688.1, intron 1 of 3) lincRNA-intron (ENSMUSG00000109688.1, intron 1 of 3) 4317 ENSMUSG00000109688.1 ENSMUSG00000109688 ENSMUST00000211189 Gm34597 lincRNA Interval_55288 chr14 80354973 80356100 + 0 NA Intergenic Intergenic -13051 ENSMUSG00000098125.1 ENSMUSG00000098125 ENSMUST00000182354 Gm9578 processed_pseudogene Interval_133107 chr5 149853257 149853474 + 0 NA exon (ENSMUSG00000107214.3, exon 2 of 2) processed_transcript-exon (ENSMUSG00000107214.3, exon 2 of 2) 5618 ENSMUSG00000107214.3 ENSMUSG00000107214 ENSMUST00000200855 4930500F04Rik processed_transcript Interval_77205 chr17 87344991 87345265 + 0 NA intron (ENSMUSG00000036918.16, intron 13 of 18) protein_coding-intron (ENSMUSG00000036918.16, intron 14 of 19) -13076 ENSMUSG00000089701.1 ENSMUSG00000089701 ENSMUST00000161043 Gm15978 antisense Interval_141185 chr6 125467391 125468220 + 0 NA intron (ENSMUSG00000030342.8, intron 3 of 8) protein_coding-intron (ENSMUSG00000030342.8, intron 2 of 7) -4781 ENSMUSG00000030342.8 ENSMUSG00000030342 ENSMUST00000140024 Cd9 protein_coding Interval_80478 chr18 42572154 42572678 + 0 NA intron (ENSMUSG00000024498.16, intron 20 of 21) protein_coding-intron (ENSMUSG00000024498.16, intron 19 of 20) -1793 ENSMUSG00000099024.1 ENSMUSG00000099024 ENSMUST00000184771 Gm27457 misc_RNA Interval_63061 chr15 98894147 98894613 + 0 NA promoter-TSS (ENSMUSG00000023755.10) protein_coding-promoter-TSS (ENSMUSG00000023755.10) 1029 ENSMUSG00000116033.1 ENSMUSG00000116033 ENSMUST00000230242 Gm49442 antisense Interval_111282 chr4 17091835 17092862 + 0 NA Intergenic Intergenic -46296 ENSMUSG00000082552.1 ENSMUSG00000082552 ENSMUST00000119679 Gm11850 processed_pseudogene Interval_141242 chr6 126417694 126418346 + 0 NA Intergenic Intergenic 81153 ENSMUSG00000108163.1 ENSMUSG00000108163 ENSMUST00000203500 Gm44431 processed_pseudogene Interval_67617 chr16 52766505 52767591 + 0 NA Intergenic Intergenic 48696 ENSMUSG00000116611.1 ENSMUSG00000116611 ENSMUST00000232028 4930404A05Rik lincRNA Interval_41761 chr12 118825970 118826417 + 0 NA Intergenic Intergenic -21393 ENSMUSG00000048562.7 ENSMUSG00000048562 ENSMUST00000223305 Sp8 protein_coding Interval_37376 chr12 66008931 66010379 + 0 NA Intergenic Intergenic 41279 ENSMUSG00000113785.1 ENSMUSG00000113785 ENSMUST00000222655 Gm47975 TEC Interval_89298 chr2 18996853 18998839 + 0 NA promoter-TSS (ENSMUSG00000026736.2) bidirectional_promoter_lncRNA-promoter-TSS (ENSMUSG00000026736.2) -497 ENSMUSG00000026736.2 ENSMUSG00000026736 ENSMUST00000238778 4930426L09Rik bidirectional_promoter_lncRNA Interval_143528 chr7 12005630 12005837 + 0 NA intron (ENSMUSG00000092318.1, intron 1 of 1) unprocessed_pseudogene-intron (ENSMUSG00000092318.1, intron 1 of 1) 667 ENSMUSG00000092318.1 ENSMUSG00000092318 ENSMUST00000173467 Vmn1r-ps60 unprocessed_pseudogene Interval_98976 chr2 156438062 156438842 + 0 NA intron (ENSMUSG00000027624.20, intron 1 of 21) protein_coding-intron (ENSMUSG00000027624.20, intron 1 of 21) 9156 ENSMUSG00000086872.1 ENSMUSG00000086872 ENSMUST00000142310 Gm14225 antisense Interval_34994 chr12 16526307 16526698 + 0 NA Intergenic Intergenic 84464 ENSMUSG00000020593.16 ENSMUSG00000020593 ENSMUST00000221146 Lpin1 protein_coding Interval_106813 chr3 101041783 101043571 + 0 NA exon (ENSMUSG00000027864.9, exon 9 of 9) protein_coding-exon (ENSMUSG00000027864.9, exon 9 of 9) -20501 ENSMUSG00000086564.9 ENSMUSG00000086564 ENSMUST00000167086 Cd101 protein_coding Interval_45984 chr13 59791275 59791485 + 0 NA intron (ENSMUSG00000035248.9, intron 10 of 18) protein_coding-intron (ENSMUSG00000035248.9, intron 18 of 27) -9135 ENSMUSG00000114763.1 ENSMUSG00000114763 ENSMUST00000225581 Gm49354 protein_coding Interval_109890 chr3 149537888 149539430 + 0 NA Intergenic Intergenic -93358 ENSMUSG00000106515.4 ENSMUSG00000106515 ENSMUST00000199503 Gm30382 lincRNA Interval_126344 chr5 86840690 86841283 + 0 NA Intergenic Intergenic 22520 ENSMUSG00000105309.1 ENSMUSG00000105309 ENSMUST00000200382 Gm21461 unprocessed_pseudogene Interval_104051 chr3 57710748 57711730 + 0 NA Intergenic Intergenic 7050 ENSMUSG00000104623.1 ENSMUSG00000104623 ENSMUST00000197077 Gm6394 processed_pseudogene Interval_58728 chr15 37400843 37402375 + 0 NA intron (ENSMUSG00000051359.15, intron 1 of 1) protein_coding-intron (ENSMUSG00000051359.15, intron 4 of 6) -19639 ENSMUSG00000084316.1 ENSMUSG00000084316 ENSMUST00000120559 Gm8668 processed_pseudogene Interval_97317 chr2 133799942 133800161 + 0 NA Intergenic Intergenic -215630 ENSMUSG00000064983.1 ENSMUSG00000064983 ENSMUST00000083049 Gm25258 snRNA Interval_71161 chr17 20521059 20521387 + 0 NA Intergenic Intergenic 23065 ENSMUSG00000043537.2 ENSMUSG00000043537 ENSMUST00000061660 Vmn1r225 protein_coding Interval_159153 chr8 91133480 91134681 + 0 NA promoter-TSS (ENSMUSG00000031667.16) protein_coding-promoter-TSS (ENSMUSG00000031667.16) -83 ENSMUSG00000031667.16 ENSMUSG00000031667 ENSMUST00000211576 Aktip protein_coding Interval_77625 chr17 93288875 93290013 + 0 NA Intergenic Intergenic 27817 ENSMUSG00000117362.1 ENSMUSG00000117362 ENSMUST00000234454 Gm9665 processed_pseudogene Interval_43491 chr13 31835686 31835975 + 0 NA intron (ENSMUSG00000038372.14, intron 9 of 10) protein_coding-intron (ENSMUSG00000038372.14, intron 9 of 10) -1094 ENSMUSG00000113119.1 ENSMUSG00000113119 ENSMUST00000221416 Gm48883 TEC Interval_74859 chr17 56913940 56914140 + 0 NA intron (ENSMUSG00000024212.9, intron 3 of 11) protein_coding-intron (ENSMUSG00000024212.9, intron 3 of 11) -8294 ENSMUSG00000024212.9 ENSMUSG00000024212 ENSMUST00000233063 Mllt1 protein_coding Interval_158072 chr8 78552271 78552820 + 0 NA intron (ENSMUSG00000031684.11, intron 4 of 10) protein_coding-intron (ENSMUSG00000031684.11, intron 4 of 11) 43199 ENSMUSG00000031684.11 ENSMUSG00000031684 ENSMUST00000210132 Slc10a7 protein_coding Interval_160383 chr8 108863215 108863638 + 0 NA intron (ENSMUSG00000038872.10, intron 10 of 15) protein_coding-intron (ENSMUSG00000038872.10, intron 4 of 9) -4136 ENSMUSG00000102989.1 ENSMUSG00000102989 ENSMUST00000195769 Gm38318 TEC Interval_99884 chr2 165593989 165596030 + 0 NA promoter-TSS (ENSMUSG00000017897.18) protein_coding-promoter-TSS (ENSMUSG00000017897.18) 6778 ENSMUSG00000100796.1 ENSMUSG00000100796 ENSMUST00000187099 Gm28163 lincRNA Interval_46059 chr13 60664680 60665008 + 0 NA intron (ENSMUSG00000021559.14, intron 2 of 26) protein_coding-intron (ENSMUSG00000021559.14, intron 2 of 26) 23054 ENSMUSG00000114277.1 ENSMUSG00000114277 ENSMUST00000225897 Gm48583 processed_pseudogene Interval_106870 chr3 101425480 101425992 + 0 NA promoter-TSS (ENSMUSG00000106137.1) antisense-promoter-TSS (ENSMUSG00000106137.1) -83 ENSMUSG00000106137.1 ENSMUSG00000106137 ENSMUST00000196233 Gm42538 antisense Interval_6621 chr1 118357168 118358367 + 0 NA exon (ENSMUSG00000099936.1, exon 1 of 3) lincRNA-exon (ENSMUSG00000099936.1, exon 1 of 3) 455 ENSMUSG00000099936.1 ENSMUSG00000099936 ENSMUST00000190194 Gm28867 lincRNA Interval_100472 chr2 169288449 169289784 + 0 NA Intergenic Intergenic 54125 ENSMUSG00000085369.1 ENSMUSG00000085369 ENSMUST00000152494 9430093N23Rik lincRNA Interval_57627 chr15 12916105 12916939 + 0 NA intron (ENSMUSG00000022191.16, intron 29 of 34) protein_coding-intron (ENSMUSG00000022191.16, intron 29 of 34) -39200 ENSMUSG00000115807.1 ENSMUSG00000115807 ENSMUST00000226269 Gm49100 unprocessed_pseudogene Interval_135924 chr6 48746049 48746990 + 0 NA exon (ENSMUSG00000043505.8, exon 1 of 1) protein_coding-exon (ENSMUSG00000043505.8, exon 1 of 1) 220 ENSMUSG00000043505.8 ENSMUSG00000043505 ENSMUST00000203006 Gimap5 protein_coding Interval_62490 chr15 93442461 93442725 + 0 NA intron (ENSMUSG00000036167.16, intron 4 of 7) protein_coding-intron (ENSMUSG00000036167.16, intron 5 of 9) 43385 ENSMUSG00000036167.16 ENSMUSG00000036167 ENSMUST00000229721 Pphln1 protein_coding Interval_170467 chr9 108165276 108165789 + 0 NA intron (ENSMUSG00000032589.14, intron 1 of 11) protein_coding-intron (ENSMUSG00000032589.14, intron 1 of 11) 5253 ENSMUSG00000103658.1 ENSMUSG00000103658 ENSMUST00000191845 Gm37201 processed_pseudogene Interval_66630 chr16 35746217 35746551 + 0 NA intron (ENSMUSG00000022848.8, intron 1 of 7) protein_coding-intron (ENSMUSG00000022848.8, intron 2 of 8) 22946 ENSMUSG00000022848.8 ENSMUSG00000022848 ENSMUST00000149892 Slc49a4 protein_coding Interval_67114 chr16 43385764 43386398 + 0 NA intron (ENSMUSG00000022708.16, intron 1 of 4) protein_coding-intron (ENSMUSG00000022708.16, intron 2 of 8) -22415 ENSMUSG00000055370.3 ENSMUSG00000055370 ENSMUST00000147504 Gm9968 antisense Interval_172185 chrX 8260376 8260954 + 0 NA Intergenic Intergenic -10468 ENSMUSG00000031170.14 ENSMUSG00000031170 ENSMUST00000115590 Slc38a5 protein_coding Interval_38856 chr12 83439595 83439782 + 0 NA intron (ENSMUSG00000021221.15, intron 1 of 10) protein_coding-intron (ENSMUSG00000021221.15, intron 1 of 8) 48028 ENSMUSG00000021221.15 ENSMUSG00000021221 ENSMUST00000177801 Dpf3 protein_coding Interval_163707 chr9 24761525 24762813 + 0 NA intron (ENSMUSG00000031965.15, intron 4 of 5) protein_coding-intron (ENSMUSG00000031965.15, intron 4 of 7) 12115 ENSMUSG00000031965.15 ENSMUSG00000031965 ENSMUST00000216564 Tbx20 protein_coding Interval_162794 chr9 9165592 9166547 + 0 NA intron (ENSMUSG00000050730.17, intron 2 of 5) protein_coding-intron (ENSMUSG00000050730.17, intron 2 of 22) -70219 ENSMUSG00000085253.3 ENSMUSG00000085253 ENSMUST00000150263 Gm16833 antisense Interval_73593 chr17 40892684 40894237 + 0 NA Intergenic Intergenic -12902 ENSMUSG00000054951.3 ENSMUSG00000054951 ENSMUST00000233122 9130008F23Rik protein_coding Interval_153437 chr7 144796337 144796632 + 0 NA Intergenic Intergenic 4488 ENSMUSG00000108874.1 ENSMUSG00000108874 ENSMUST00000208857 Gm9711 processed_pseudogene Interval_130004 chr5 123653461 123653719 + 0 NA exon (ENSMUSG00000049550.17, exon 2 of 25) protein_coding-exon (ENSMUSG00000049550.17, exon 2 of 25) -17316 ENSMUSG00000049550.17 ENSMUSG00000049550 ENSMUST00000199018 Clip1 protein_coding Interval_2175 chr1 36864621 36865335 + 0 NA intron (ENSMUSG00000026116.11, intron 5 of 41) protein_coding-intron (ENSMUSG00000026116.11, intron 4 of 40) 7067 ENSMUSG00000103016.1 ENSMUSG00000103016 ENSMUST00000192008 Gm37506 TEC Interval_32122 chr11 105347422 105348181 + 0 NA intron (ENSMUSG00000020695.14, intron 25 of 29) protein_coding-intron (ENSMUSG00000020695.14, intron 25 of 29) 6969 ENSMUSG00000020695.14 ENSMUSG00000020695 ENSMUST00000151135 Mrc2 protein_coding Interval_28960 chr11 79580241 79580656 + 0 NA TTS (ENSMUSG00000020716.16) protein_coding-TTS (ENSMUSG00000020716.16) -14717 ENSMUSG00000064486.1 ENSMUSG00000064486 ENSMUST00000082552 Gm23293 snRNA Interval_8831 chr1 151439558 151440002 + 0 NA intron (ENSMUSG00000053286.11, intron 4 of 14) protein_coding-intron (ENSMUSG00000053286.11, intron 4 of 14) -2613 ENSMUSG00000106406.1 ENSMUSG00000106406 ENSMUST00000198467 Mir7682 miRNA Interval_162879 chr9 11181697 11182401 + 0 NA Intergenic Intergenic 33449 ENSMUSG00000111691.1 ENSMUSG00000111691 ENSMUST00000213828 Gm47002 lincRNA Interval_17653 chr10 78502804 78503575 + 0 NA intron (ENSMUSG00000112224.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000112224.1, intron 1 of 1) -14239 ENSMUSG00000107822.4 ENSMUSG00000107822 ENSMUST00000204477 Olfr1358 protein_coding Interval_155741 chr8 36608256 36609203 + 0 NA intron (ENSMUSG00000031523.16, intron 5 of 17) protein_coding-intron (ENSMUSG00000031523.16, intron 1 of 13) 119538 ENSMUSG00000039620.17 ENSMUSG00000039620 ENSMUST00000125492 Trmt9b protein_coding Interval_85592 chr19 28915723 28916044 + 0 NA intron (ENSMUSG00000064202.15, intron 11 of 11) protein_coding-intron (ENSMUSG00000064202.15, intron 11 of 11) -4004 ENSMUSG00000064202.15 ENSMUSG00000064202 ENSMUST00000161813 4430402I18Rik protein_coding Interval_53702 chr14 60987932 60988724 + 0 NA intron (ENSMUSG00000060548.13, intron 5 of 5) protein_coding-intron (ENSMUSG00000060548.13, intron 5 of 9) 49563 ENSMUSG00000060548.13 ENSMUSG00000060548 ENSMUST00000225730 Tnfrsf19 protein_coding Interval_95046 chr2 103445132 103446258 + 0 NA TTS (ENSMUSG00000027186.15) protein_coding-TTS (ENSMUSG00000027186.15) 34007 ENSMUSG00000027186.15 ENSMUSG00000027186 ENSMUST00000152055 Elf5 protein_coding Interval_101832 chr3 9827097 9827325 + 0 NA TTS (ENSMUSG00000027508.15) protein_coding-TTS (ENSMUSG00000027508.15) 2517 ENSMUSG00000088004.1 ENSMUSG00000088004 ENSMUST00000157379 Gm24786 rRNA Interval_61984 chr15 85645627 85646643 + 0 NA promoter-TSS (ENSMUSG00000116004.1) lincRNA-promoter-TSS (ENSMUSG00000116004.1) 52 ENSMUSG00000116004.1 ENSMUSG00000116004 ENSMUST00000230234 Gm49539 lincRNA Interval_153295 chr7 143408912 143409351 + 0 NA intron (ENSMUSG00000009545.14, intron 15 of 15) protein_coding-intron (ENSMUSG00000009545.14, intron 15 of 15) -38474 ENSMUSG00000099103.1 ENSMUSG00000099103 ENSMUST00000184559 Gm27901 misc_RNA Interval_146185 chr7 44581293 44581541 + 0 NA promoter-TSS (ENSMUSG00000002204.9) protein_coding-promoter-TSS (ENSMUSG00000002204.9) -937 ENSMUSG00000002204.9 ENSMUSG00000002204 ENSMUST00000207302 Napsa protein_coding Interval_60366 chr15 73190955 73191254 + 0 NA Intergenic Intergenic -13257 ENSMUSG00000036698.11 ENSMUSG00000036698 ENSMUST00000230464 Ago2 protein_coding Interval_130363 chr5 126725668 126725883 + 0 NA intron (ENSMUSG00000106235.1, intron 2 of 2) lincRNA-intron (ENSMUSG00000105673.1, intron 2 of 3) 1509 ENSMUSG00000106235.1 ENSMUSG00000106235 ENSMUST00000200003 Gm33347 lincRNA Interval_120186 chr4 143844240 143844957 + 0 NA Intergenic Intergenic -1909 ENSMUSG00000029451.14 ENSMUSG00000029451 ENSMUST00000105768 Gm13103 protein_coding Interval_29889 chr11 87531653 87532129 + 0 NA intron (ENSMUSG00000010342.16, intron 19 of 30) protein_coding-intron (ENSMUSG00000010342.16, intron 19 of 30) -34762 ENSMUSG00000020486.19 ENSMUSG00000020486 ENSMUST00000143950 Septin4 protein_coding Interval_45526 chr13 55658344 55658565 + 0 NA intron (ENSMUSG00000021500.17, intron 11 of 15) protein_coding-intron (ENSMUSG00000021500.17, intron 11 of 21) -11310 ENSMUSG00000021500.17 ENSMUSG00000021500 ENSMUST00000231097 Ddx46 protein_coding Interval_7605 chr1 132481182 132481556 + 0 NA intron (ENSMUSG00000026439.14, intron 1 of 4) protein_coding-intron (ENSMUSG00000026439.14, intron 1 of 14) 4002 ENSMUSG00000026439.14 ENSMUSG00000026439 ENSMUST00000187834 Rbbp5 protein_coding Interval_27803 chr11 70079514 70080212 + 0 NA Intergenic Intergenic -17829 ENSMUSG00000040963.15 ENSMUSG00000040963 ENSMUST00000179757 Asgr2 protein_coding Interval_78066 chr18 7639923 7640442 + 0 NA Intergenic Intergenic -13328 ENSMUSG00000057440.8 ENSMUSG00000057440 ENSMUST00000233992 Mpp7 protein_coding Interval_109699 chr3 146059430 146060370 + 0 NA intron (ENSMUSG00000043020.13, intron 16 of 22) protein_coding-intron (ENSMUSG00000043020.13, intron 16 of 22) -12715 ENSMUSG00000043020.13 ENSMUSG00000043020 ENSMUST00000161104 Wdr63 protein_coding Interval_122175 chr5 18797779 18800295 + 0 NA Intergenic Intergenic -15167 ENSMUSG00000105930.1 ENSMUSG00000105930 ENSMUST00000198410 Gm17889 processed_pseudogene Interval_130513 chr5 128504240 128505118 + 0 NA Intergenic Intergenic 12955 ENSMUSG00000104980.1 ENSMUSG00000104980 ENSMUST00000199120 4930573I07Rik lincRNA Interval_3643 chr1 60319785 60320217 + 0 NA TTS (ENSMUSG00000073664.11) protein_coding-TTS (ENSMUSG00000073664.11) -23322 ENSMUSG00000049439.13 ENSMUSG00000049439 ENSMUST00000148443 Cyp20a1 protein_coding Interval_37425 chr12 68406475 68407024 + 0 NA intron (ENSMUSG00000113867.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000113867.1, intron 1 of 2) 33533 ENSMUSG00000113161.1 ENSMUSG00000113161 ENSMUST00000220950 Gm47457 TEC Interval_44410 chr13 44687964 44688954 + 0 NA Intergenic Intergenic -42911 ENSMUSG00000038518.15 ENSMUSG00000038518 ENSMUST00000173003 Jarid2 protein_coding Interval_137796 chr6 82585306 82585743 + 0 NA Intergenic Intergenic -94608 ENSMUSG00000107453.1 ENSMUSG00000107453 ENSMUST00000203711 Gm44145 antisense Interval_153828 chr8 9295814 9296176 + 0 NA intron (ENSMUSG00000079157.4, intron 1 of 3) protein_coding-intron (ENSMUSG00000079157.4, intron 1 of 2) 49131 ENSMUSG00000109286.1 ENSMUSG00000109286 ENSMUST00000207837 Gm44541 TEC Interval_170859 chr9 111277601 111278451 + 0 NA TTS (ENSMUSG00000046785.8) protein_coding-TTS (ENSMUSG00000046785.8) 3924 ENSMUSG00000046785.8 ENSMUSG00000046785 ENSMUST00000200053 Epm2aip1 protein_coding Interval_86900 chr19 44719215 44720602 + 0 NA Intergenic Intergenic -19971 ENSMUSG00000117823.1 ENSMUSG00000117823 ENSMUST00000236025 Gm35610 lincRNA Interval_62423 chr15 92361790 92362245 + 0 NA intron (ENSMUSG00000097068.2, intron 1 of 3) lincRNA-intron (ENSMUSG00000097068.2, intron 1 of 3) 17658 ENSMUSG00000097068.2 ENSMUSG00000097068 ENSMUST00000181901 Gm26760 lincRNA Interval_56017 chr14 104465880 104466347 + 0 NA promoter-TSS (ENSMUSG00000048349.9) protein_coding-promoter-TSS (ENSMUSG00000048349.9) -748 ENSMUSG00000048349.9 ENSMUSG00000048349 ENSMUST00000139505 Pou4f1 protein_coding Interval_73790 chr17 43676391 43676588 + 0 NA intron (ENSMUSG00000023963.10, intron 1 of 10) protein_coding-intron (ENSMUSG00000023963.10, intron 1 of 11) 8979 ENSMUSG00000023963.10 ENSMUSG00000023963 ENSMUST00000233165 Cyp39a1 protein_coding Interval_69796 chr16 96467024 96468022 + 0 NA promoter-TSS (ENSMUSG00000090223.2) protein_coding-promoter-TSS (ENSMUSG00000090223.2) 22809 ENSMUSG00000117039.1 ENSMUSG00000117039 ENSMUST00000233005 Gm32358 TEC Interval_125635 chr5 72927502 72927739 + 0 NA intron (ENSMUSG00000036087.18, intron 2 of 5) protein_coding-intron (ENSMUSG00000036087.18, intron 1 of 8) -12678 ENSMUSG00000052154.4 ENSMUSG00000052154 ENSMUST00000063874 Gm9870 TEC Interval_91308 chr2 37616268 37616774 + 0 NA intron (ENSMUSG00000026915.16, intron 9 of 18) protein_coding-intron (ENSMUSG00000026915.16, intron 9 of 16) -30003 ENSMUSG00000026915.16 ENSMUSG00000026915 ENSMUST00000144206 Strbp protein_coding Interval_167485 chr9 69881857 69882484 + 0 NA Intergenic Intergenic -89019 ENSMUSG00000111286.1 ENSMUSG00000111286 ENSMUST00000216018 Gm18745 processed_pseudogene Interval_136292 chr6 52605283 52606351 + 0 NA intron (ENSMUSG00000029776.11, intron 3 of 5) protein_coding-intron (ENSMUSG00000029776.11, intron 4 of 7) -2572 ENSMUSG00000107813.1 ENSMUSG00000107813 ENSMUST00000203918 Gm44434 TEC Interval_91344 chr2 37936957 37937424 + 0 NA intron (ENSMUSG00000035392.17, intron 9 of 9) protein_coding-intron (ENSMUSG00000035392.17, intron 12 of 21) 81977 ENSMUSG00000107586.1 ENSMUSG00000107586 ENSMUST00000204461 Gm44283 TEC Interval_5145 chr1 86024049 86024974 + 0 NA exon (ENSMUSG00000026226.16, exon 2 of 2) protein_coding-exon (ENSMUSG00000026226.16, exon 2 of 2) 2551 ENSMUSG00000026226.16 ENSMUSG00000026226 ENSMUST00000131151 Spata3 protein_coding Interval_131918 chr5 140776815 140777954 + 0 NA intron (ENSMUSG00000000149.10, intron 2 of 3) protein_coding-intron (ENSMUSG00000000149.10, intron 2 of 3) 52773 ENSMUSG00000000149.10 ENSMUSG00000000149 ENSMUST00000198447 Gna12 protein_coding Interval_159140 chr8 90992697 90992948 + 0 NA exon (ENSMUSG00000056608.14, exon 1 of 1) protein_coding-exon (ENSMUSG00000056608.14, exon 1 of 1) -62442 ENSMUSG00000110377.1 ENSMUSG00000110377 ENSMUST00000210196 Gm45363 TEC Interval_158655 chr8 84985343 84986457 + 0 NA Intergenic Intergenic -4742 ENSMUSG00000052566.8 ENSMUSG00000052566 ENSMUST00000209652 Hook2 protein_coding Interval_103766 chr3 52470037 52470391 + 0 NA Intergenic Intergenic 44806 ENSMUSG00000103454.1 ENSMUSG00000103454 ENSMUST00000194115 Gm38098 processed_pseudogene Interval_124758 chr5 53699806 53700049 + 0 NA exon (ENSMUSG00000029193.7, exon 5 of 5) protein_coding-exon (ENSMUSG00000029193.7, exon 5 of 5) 7633 ENSMUSG00000029193.7 ENSMUSG00000029193 ENSMUST00000202946 Cckar protein_coding Interval_88839 chr2 11555522 11555745 + 0 NA Intergenic Intergenic -1711 ENSMUSG00000026773.19 ENSMUSG00000026773 ENSMUST00000145970 Pfkfb3 protein_coding Interval_84205 chr19 8747546 8748018 + 0 NA promoter-TSS (ENSMUSG00000010110.17) protein_coding-promoter-TSS (ENSMUSG00000010110.17) 4811 ENSMUSG00000098844.1 ENSMUSG00000098844 ENSMUST00000183342 Mir6992 miRNA Interval_5199 chr1 86424796 86425365 + 0 NA intron (ENSMUSG00000026237.6, intron 1 of 3) protein_coding-intron (ENSMUSG00000026237.6, intron 1 of 3) -1249 ENSMUSG00000036574.5 ENSMUSG00000036574 ENSMUST00000046004 Tex44 protein_coding Interval_143919 chr7 17540025 17540259 + 0 NA Intergenic Intergenic -70624 ENSMUSG00000096673.1 ENSMUSG00000096673 ENSMUST00000179510 Gm24520 miRNA Interval_140905 chr6 122689376 122690744 + 0 NA Intergenic Intergenic -5941 ENSMUSG00000072789.4 ENSMUSG00000072789 ENSMUST00000121713 Gm10420 processed_pseudogene Interval_41923 chr13 4563178 4563400 + 0 NA Intergenic Intergenic -10786 ENSMUSG00000021207.9 ENSMUSG00000021207 ENSMUST00000137279 Akr1c21 protein_coding Interval_84801 chr19 16843306 16844475 + 0 NA Intergenic Intergenic 29915 ENSMUSG00000056829.4 ENSMUSG00000056829 ENSMUST00000072915 Foxb2 protein_coding Interval_94204 chr2 85070201 85070826 + 0 NA intron (ENSMUSG00000033955.13, intron 5 of 9) protein_coding-intron (ENSMUSG00000033955.13, intron 3 of 7) 9549 ENSMUSG00000033955.13 ENSMUSG00000033955 ENSMUST00000238769 Tnks1bp1 protein_coding Interval_84657 chr19 14785477 14786182 + 0 NA Intergenic Intergenic -67349 ENSMUSG00000084675.1 ENSMUSG00000084675 ENSMUST00000122726 Gm26026 snRNA Interval_553 chr1 7287354 7288554 + 0 NA Intergenic Intergenic 22151 ENSMUSG00000077244.1 ENSMUSG00000077244 ENSMUST00000104056 Gm23274 snoRNA Interval_9842 chr1 162907064 162907962 + 0 NA Intergenic Intergenic -26782 ENSMUSG00000040170.13 ENSMUSG00000040170 ENSMUST00000147617 Fmo2 protein_coding Interval_122522 chr5 23576484 23576887 + 0 NA intron (ENSMUSG00000062604.11, intron 2 of 5) protein_coding-intron (ENSMUSG00000062604.11, intron 1 of 14) -34567 ENSMUSG00000062604.11 ENSMUSG00000062604 ENSMUST00000196592 Srpk2 protein_coding Interval_90626 chr2 31545159 31545798 + 0 NA Intergenic Intergenic 7217 ENSMUSG00000084226.1 ENSMUSG00000084226 ENSMUST00000117887 Gm13426 processed_pseudogene Interval_127895 chr5 108677102 108678209 + 0 NA intron (ENSMUSG00000033540.18, intron 2 of 3) protein_coding-intron (ENSMUSG00000033540.18, intron 3 of 14) -2902 ENSMUSG00000046959.16 ENSMUSG00000046959 ENSMUST00000136227 Slc26a1 protein_coding Interval_154171 chr8 13200102 13201127 + 0 NA promoter-TSS (ENSMUSG00000038515.10) protein_coding-promoter-TSS (ENSMUSG00000038515.10) 3 ENSMUSG00000038515.10 ENSMUSG00000038515 ENSMUST00000211128 Grtp1 protein_coding Interval_42886 chr13 21089265 21090177 + 0 NA Intergenic Intergenic -14774 ENSMUSG00000042869.2 ENSMUSG00000042869 ENSMUST00000058168 Olfr1370 protein_coding Interval_74375 chr17 49702579 49702818 + 0 NA intron (ENSMUSG00000023999.14, intron 6 of 22) protein_coding-intron (ENSMUSG00000023999.14, intron 6 of 11) 87526 ENSMUSG00000023999.14 ENSMUSG00000023999 ENSMUST00000159354 Kif6 protein_coding Interval_113664 chr4 57384492 57384755 + 0 NA Intergenic Intergenic -12669 ENSMUSG00000095042.1 ENSMUSG00000095042 ENSMUST00000119266 Gm12537 processed_pseudogene Interval_66860 chr16 38167807 38169245 + 0 NA intron (ENSMUSG00000022812.14, intron 2 of 5) protein_coding-intron (ENSMUSG00000022812.14, intron 2 of 10) 10518 ENSMUSG00000105863.1 ENSMUSG00000105863 ENSMUST00000198387 Gm25617 snoRNA Interval_139076 chr6 94791625 94792595 + 0 NA Intergenic Intergenic -7322 ENSMUSG00000107716.1 ENSMUSG00000107716 ENSMUST00000203986 Gm43997 TEC Interval_23413 chr11 22446502 22446815 + 0 NA Intergenic Intergenic -6883 ENSMUSG00000085856.1 ENSMUSG00000085856 ENSMUST00000127483 Gm12050 lincRNA Interval_120880 chr4 151242293 151244013 + 0 NA intron (ENSMUSG00000014592.21, intron 6 of 24) protein_coding-intron (ENSMUSG00000014592.21, intron 6 of 23) -133317 ENSMUSG00000085593.1 ENSMUSG00000085593 ENSMUST00000129097 4930589P08Rik antisense Interval_55982 chr14 103649763 103651200 + 0 NA promoter-TSS (ENSMUSG00000055717.13) protein_coding-promoter-TSS (ENSMUSG00000055717.13) 76 ENSMUSG00000093192.1 ENSMUSG00000093192 ENSMUST00000175451 Gm22877 miRNA Interval_115170 chr4 93043912 93044279 + 0 NA Intergenic Intergenic -62893 ENSMUSG00000082919.1 ENSMUSG00000082919 ENSMUST00000117874 Gm12641 processed_pseudogene Interval_16301 chr10 62061138 62061561 + 0 NA Intergenic Intergenic -9774 ENSMUSG00000046687.6 ENSMUSG00000046687 ENSMUST00000053865 Gm5424 processed_pseudogene Interval_61391 chr15 81294272 81294677 + 0 NA intron (ENSMUSG00000115970.1, intron 1 of 3) lincRNA-intron (ENSMUSG00000115970.1, intron 1 of 3) -42612 ENSMUSG00000115970.1 ENSMUSG00000115970 ENSMUST00000230042 8430426J06Rik lincRNA Interval_27404 chr11 67379497 67380610 + 0 NA Intergenic Intergenic 15268 ENSMUSG00000060180.12 ENSMUSG00000060180 ENSMUST00000181027 Myh13 protein_coding Interval_93408 chr2 72903025 72903426 + 0 NA Intergenic Intergenic 47762 ENSMUSG00000092851.1 ENSMUSG00000092851 ENSMUST00000175110 Gm25960 miRNA Interval_111509 chr4 22282184 22283753 + 0 NA Intergenic Intergenic 7135 ENSMUSG00000083376.1 ENSMUSG00000083376 ENSMUST00000121463 Gm11882 processed_pseudogene Interval_17272 chr10 75486192 75487808 + 0 NA intron (ENSMUSG00000033416.15, intron 2 of 3) protein_coding-intron (ENSMUSG00000033416.15, intron 5 of 8) -3608 ENSMUSG00000112764.1 ENSMUSG00000112764 ENSMUST00000218219 Gm48158 processed_pseudogene Interval_73004 chr17 34086970 34087858 + 0 NA intron (ENSMUSG00000098197.2, intron 3 of 4) antisense-intron (ENSMUSG00000098197.2, intron 3 of 4) 2813 ENSMUSG00000098241.2 ENSMUSG00000098241 ENSMUST00000182803 H2-Pa unprocessed_pseudogene Interval_87934 chr19 57196893 57198029 + 0 NA promoter-TSS (ENSMUSG00000025085.16) protein_coding-promoter-TSS (ENSMUSG00000025085.16) -76499 ENSMUSG00000117684.1 ENSMUSG00000117684 ENSMUST00000237596 4930449E18Rik antisense Interval_126464 chr5 88709633 88710058 + 0 NA Intergenic Intergenic -11010 ENSMUSG00000006262.15 ENSMUSG00000006262 ENSMUST00000125171 Mob1b protein_coding Interval_131394 chr5 136923172 136923999 + 0 NA intron (ENSMUSG00000097908.7, intron 2 of 4) lincRNA-intron (ENSMUSG00000097908.7, intron 2 of 3) 4404 ENSMUSG00000097908.7 ENSMUSG00000097908 ENSMUST00000181190 4933404O12Rik lincRNA Interval_57948 chr15 25692186 25693181 + 0 NA intron (ENSMUSG00000022272.17, intron 1 of 4) protein_coding-intron (ENSMUSG00000022272.17, intron 2 of 40) 10885 ENSMUSG00000089639.1 ENSMUSG00000089639 ENSMUST00000161524 Gm2862 processed_pseudogene Interval_171296 chr9 116174572 116176402 + 0 NA promoter-TSS (ENSMUSG00000032440.13) protein_coding-promoter-TSS (ENSMUSG00000032440.13) -222 ENSMUSG00000032440.13 ENSMUSG00000032440 ENSMUST00000035014 Tgfbr2 protein_coding Interval_116322 chr4 109797477 109797726 + 0 NA intron (ENSMUSG00000010517.7, intron 8 of 18) protein_coding-intron (ENSMUSG00000010517.7, intron 8 of 18) -42784 ENSMUSG00000083995.1 ENSMUSG00000083995 ENSMUST00000120597 Gm12808 processed_pseudogene Interval_49174 chr13 109170548 109170799 + 0 NA intron (ENSMUSG00000021699.17, intron 1 of 14) protein_coding-intron (ENSMUSG00000021699.17, intron 1 of 14) -154071 ENSMUSG00000076946.2 ENSMUSG00000076946 ENSMUST00000103758 Mir582 miRNA Interval_32636 chr11 109343540 109345059 + 0 NA Intergenic Intergenic -2540 ENSMUSG00000099630.1 ENSMUSG00000099630 ENSMUST00000190043 1700096J18Rik lincRNA Interval_174521 chrX 155622549 155625066 + 0 NA promoter-TSS (ENSMUSG00000041552.7) protein_coding-promoter-TSS (ENSMUSG00000041552.7) -689 ENSMUSG00000041552.7 ENSMUSG00000041552 ENSMUST00000141356 Ptchd1 protein_coding Interval_57196 chr15 7390303 7390611 + 0 NA intron (ENSMUSG00000042961.13, intron 1 of 15) protein_coding-intron (ENSMUSG00000042961.13, intron 1 of 21) -7440 ENSMUSG00000090199.1 ENSMUSG00000090199 ENSMUST00000161643 Gm16029 antisense Interval_162735 chr9 8156945 8157206 + 0 NA intron (ENSMUSG00000111353.1, intron 3 of 7) unprocessed_pseudogene-intron (ENSMUSG00000111353.1, intron 3 of 7) -2889 ENSMUSG00000111845.1 ENSMUSG00000111845 ENSMUST00000215099 Gm7495 processed_pseudogene Interval_110219 chr3 154486053 154486804 + 0 NA Intergenic Intergenic 110670 ENSMUSG00000047583.9 ENSMUSG00000047583 ENSMUST00000122976 Tyw3 protein_coding Interval_163070 chr9 15009659 15010133 + 0 NA TTS (ENSMUSG00000031934.14) protein_coding-TTS (ENSMUSG00000031934.14) 33901 ENSMUSG00000031934.14 ENSMUSG00000031934 ENSMUST00000169288 Panx1 protein_coding Interval_60490 chr15 74336541 74336943 + 0 NA Intergenic Intergenic 103702 ENSMUSG00000118581.1 ENSMUSG00000118581 ENSMUST00000239328 AC119183.1 unitary_pseudogene Interval_147694 chr7 72110350 72111489 + 0 NA promoter-TSS (ENSMUSG00000032776.9) protein_coding-promoter-TSS (ENSMUSG00000032776.9) 158 ENSMUSG00000108427.1 ENSMUSG00000108427 ENSMUST00000205418 Gm36696 antisense Interval_44702 chr13 47282110 47282861 + 0 NA Intergenic Intergenic 58454 ENSMUSG00000114958.1 ENSMUSG00000114958 ENSMUST00000224746 Gm48612 lincRNA Interval_133497 chr6 5826913 5827300 + 0 NA intron (ENSMUSG00000029757.16, intron 6 of 16) protein_coding-intron (ENSMUSG00000029757.16, intron 5 of 15) 69687 ENSMUSG00000029757.16 ENSMUSG00000029757 ENSMUST00000203520 Dync1i1 protein_coding Interval_116372 chr4 110559037 110559252 + 0 NA intron (ENSMUSG00000061298.14, intron 2 of 12) protein_coding-intron (ENSMUSG00000061298.14, intron 2 of 12) -45412 ENSMUSG00000082348.1 ENSMUSG00000082348 ENSMUST00000121546 Gm12807 processed_pseudogene Interval_1936 chr1 34722707 34724113 + 0 NA exon (ENSMUSG00000037509.21, exon 2 of 14) protein_coding-exon (ENSMUSG00000037509.21, exon 2 of 14) -29365 ENSMUSG00000102537.1 ENSMUSG00000102537 ENSMUST00000192878 Gm37224 processed_pseudogene Interval_62033 chr15 86013135 86014298 + 0 NA intron (ENSMUSG00000016028.11, intron 1 of 34) protein_coding-intron (ENSMUSG00000016028.11, intron 1 of 34) -61017 ENSMUSG00000035900.18 ENSMUSG00000035900 ENSMUST00000147286 Gramd4 protein_coding Interval_26310 chr11 56001100 56001312 + 0 NA intron (ENSMUSG00000086020.1, intron 1 of 4) antisense-intron (ENSMUSG00000086020.1, intron 1 of 4) 39804 ENSMUSG00000037393.2 ENSMUSG00000037393 ENSMUST00000037682 Nmur2 protein_coding Interval_106823 chr3 101116638 101117630 + 0 NA Intergenic Intergenic -29741 ENSMUSG00000105717.1 ENSMUSG00000105717 ENSMUST00000200367 Gm43465 sense_intronic Interval_87785 chr19 55862972 55863730 + 0 NA intron (ENSMUSG00000024985.20, intron 5 of 14) protein_coding-intron (ENSMUSG00000024985.20, intron 4 of 11) 21679 ENSMUSG00000099746.1 ENSMUSG00000099746 ENSMUST00000190974 Ppnr sense_intronic Interval_55376 chr14 86223768 86224468 + 0 NA Intergenic Intergenic 5683 ENSMUSG00000115128.1 ENSMUSG00000115128 ENSMUST00000226552 Gm49062 processed_pseudogene Interval_83545 chr18 89088936 89089373 + 0 NA intron (ENSMUSG00000023066.10, intron 6 of 19) protein_coding-intron (ENSMUSG00000023066.10, intron 35 of 48) -12474 ENSMUSG00000023066.10 ENSMUSG00000023066 ENSMUST00000237196 Rttn protein_coding Interval_24167 chr11 30861550 30861954 + 0 NA intron (ENSMUSG00000040850.17, intron 42 of 46) protein_coding-intron (ENSMUSG00000040850.17, intron 42 of 46) -3717 ENSMUSG00000040850.17 ENSMUSG00000040850 ENSMUST00000155719 Psme4 protein_coding Interval_86559 chr19 41687561 41688120 + 0 NA intron (ENSMUSG00000025020.11, intron 3 of 11) protein_coding-intron (ENSMUSG00000025020.11, intron 4 of 36) 55646 ENSMUSG00000025020.11 ENSMUSG00000025020 ENSMUST00000171586 Slit1 protein_coding Interval_83936 chr19 5710963 5711467 + 0 NA promoter-TSS (ENSMUSG00000024937.15) protein_coding-promoter-TSS (ENSMUSG00000024937.15) 6244 ENSMUSG00000024936.8 ENSMUSG00000024936 ENSMUST00000235419 Kcnk7 protein_coding Interval_103397 chr3 41201726 41202173 + 0 NA Intergenic Intergenic -29286 ENSMUSG00000105258.1 ENSMUSG00000105258 ENSMUST00000197878 Gm40038 lincRNA Interval_164771 chr9 41580567 41582277 + 0 NA promoter-TSS (ENSMUSG00000093354.1) miRNA-promoter-TSS (ENSMUSG00000093354.1) -486 ENSMUSG00000100158.1 ENSMUSG00000100158 ENSMUST00000185538 Gm28119 sense_intronic Interval_74581 chr17 53526461 53526846 + 0 NA intron (ENSMUSG00000044957.3, intron 1 of 2) protein_coding-intron (ENSMUSG00000044957.3, intron 1 of 2) 12798 ENSMUSG00000044957.3 ENSMUSG00000044957 ENSMUST00000056198 Pp2d1 protein_coding Interval_111097 chr4 12017716 12018743 + 0 NA Intergenic Intergenic -9186 ENSMUSG00000085027.1 ENSMUSG00000085027 ENSMUST00000156947 Gm11840 lincRNA Interval_23442 chr11 22646728 22647934 + 0 NA Intergenic Intergenic -20667 ENSMUSG00000083008.1 ENSMUSG00000083008 ENSMUST00000119022 Gm12053 processed_pseudogene Interval_156390 chr8 47890325 47891498 + 0 NA intron (ENSMUSG00000031563.8, intron 4 of 22) protein_coding-intron (ENSMUSG00000031563.8, intron 4 of 22) -8271 ENSMUSG00000064519.1 ENSMUSG00000064519 ENSMUST00000082585 n-R5s97 rRNA Interval_114674 chr4 83658334 83658860 + 0 NA intron (ENSMUSG00000052407.17, intron 14 of 25) protein_coding-intron (ENSMUSG00000052407.17, intron 14 of 25) -42487 ENSMUSG00000080793.1 ENSMUSG00000080793 ENSMUST00000118595 Cbx3-ps3 processed_pseudogene Interval_168339 chr9 78873538 78873827 + 0 NA Intergenic Intergenic -51844 ENSMUSG00000059422.5 ENSMUSG00000059422 ENSMUST00000182917 Gm8116 processed_pseudogene Interval_149609 chr7 100014471 100014656 + 0 NA intron (ENSMUSG00000030732.13, intron 1 of 10) protein_coding-intron (ENSMUSG00000030732.13, intron 1 of 10) 8391 ENSMUSG00000030732.13 ENSMUSG00000030732 ENSMUST00000144808 Chrdl2 protein_coding Interval_127034 chr5 99808756 99808948 + 0 NA Intergenic Intergenic 31138 ENSMUSG00000104731.1 ENSMUSG00000104731 ENSMUST00000200464 Gm43249 processed_pseudogene Interval_153726 chr8 5416569 5417338 + 0 NA Intergenic Intergenic 24037 ENSMUSG00000109313.1 ENSMUSG00000109313 ENSMUST00000208141 Gm44693 lincRNA Interval_113931 chr4 59932690 59933646 + 0 NA Intergenic Intergenic -18112 ENSMUSG00000028386.1 ENSMUSG00000028386 ENSMUST00000030081 Slc46a2 protein_coding Interval_54987 chr14 76681122 76681829 + 0 NA promoter-TSS (ENSMUSG00000101009.6) processed_transcript-promoter-TSS (ENSMUSG00000101009.6) 3821 ENSMUSG00000101009.6 ENSMUSG00000101009 ENSMUST00000191384 1700108F19Rik processed_transcript Interval_46176 chr13 62228486 62229300 + 0 NA intron (ENSMUSG00000074867.4, intron 1 of 3) protein_coding-intron (ENSMUSG00000074867.4, intron 3 of 4) -43868 ENSMUSG00000113081.1 ENSMUSG00000113081 ENSMUST00000221763 Gm3333 transcribed_processed_pseudogene Interval_100939 chr2 173516698 173516905 + 0 NA Intergenic Intergenic -5785 ENSMUSG00000027518.3 ENSMUSG00000027518 ENSMUST00000029023 1700021F07Rik protein_coding Interval_17372 chr10 76161942 76162562 + 0 NA intron (ENSMUSG00000020229.4, intron 5 of 14) protein_coding-intron (ENSMUSG00000020229.4, intron 5 of 14) 14801 ENSMUSG00000020229.4 ENSMUSG00000020229 ENSMUST00000020450 Slc5a4a protein_coding Interval_170900 chr9 111769439 111769670 + 0 NA Intergenic Intergenic -79225 ENSMUSG00000032502.8 ENSMUSG00000032502 ENSMUST00000162345 Stac protein_coding Interval_136611 chr6 56651872 56652999 + 0 NA promoter-TSS (ENSMUSG00000004347.17) protein_coding-promoter-TSS (ENSMUSG00000004347.17) 52 ENSMUSG00000004347.17 ENSMUSG00000004347 ENSMUST00000203689 Pde1c protein_coding Interval_10861 chr1 176218002 176218491 + 0 NA intron (ENSMUSG00000055214.15, intron 1 of 5) protein_coding-intron (ENSMUSG00000055214.15, intron 1 of 9) -4405 ENSMUSG00000055214.15 ENSMUSG00000055214 ENSMUST00000111166 Pld5 protein_coding Interval_103954 chr3 55442934 55443178 + 0 NA intron (ENSMUSG00000027797.15, intron 2 of 4) protein_coding-intron (ENSMUSG00000027797.15, intron 4 of 16) -18916 ENSMUSG00000027797.15 ENSMUSG00000027797 ENSMUST00000198821 Dclk1 protein_coding Interval_1588 chr1 28320781 28321884 + 0 NA Intergenic Intergenic -248586 ENSMUSG00000103241.1 ENSMUSG00000103241 ENSMUST00000193585 Gm38089 TEC Interval_6812 chr1 119787314 119787843 + 0 NA promoter-TSS (ENSMUSG00000091876.1) processed_pseudogene-promoter-TSS (ENSMUSG00000091876.1) -191 ENSMUSG00000091876.1 ENSMUSG00000091876 ENSMUST00000168653 Gm3851 processed_pseudogene Interval_7408 chr1 131112574 131113205 + 0 NA Intergenic Intergenic -10144 ENSMUSG00000089256.1 ENSMUSG00000089256 ENSMUST00000158631 Gm25717 misc_RNA Interval_10646 chr1 172417834 172418826 + 0 NA Intergenic Intergenic -27341 ENSMUSG00000102278.1 ENSMUSG00000102278 ENSMUST00000193540 Gm37145 TEC Interval_168430 chr9 80224062 80224446 + 0 NA intron (ENSMUSG00000033577.18, intron 3 of 35) protein_coding-intron (ENSMUSG00000033577.18, intron 3 of 32) 41196 ENSMUSG00000099016.1 ENSMUSG00000099016 ENSMUST00000183413 Gm27227 antisense Interval_143886 chr7 16930662 16934482 + 0 NA Intergenic Intergenic -8743 ENSMUSG00000019370.10 ENSMUSG00000019370 ENSMUST00000173557 Calm3 protein_coding Interval_65729 chr16 26154423 26154961 + 0 NA Intergenic Intergenic -113424 ENSMUSG00000090203.2 ENSMUSG00000090203 ENSMUST00000159040 AU015336 sense_intronic Interval_118111 chr4 129015345 129016998 + 0 NA Intergenic Intergenic 22818 ENSMUSG00000028792.14 ENSMUSG00000028792 ENSMUST00000152762 Ak2 protein_coding Interval_59541 chr15 55161369 55161540 + 0 NA intron (ENSMUSG00000022419.16, intron 3 of 4) protein_coding-intron (ENSMUSG00000022419.16, intron 3 of 8) 28001 ENSMUSG00000022419.16 ENSMUSG00000022419 ENSMUST00000226687 Deptor protein_coding Interval_138297 chr6 87021181 87023396 + 0 NA intron (ENSMUSG00000029993.16, intron 6 of 6) protein_coding-intron (ENSMUSG00000029993.16, intron 5 of 7) 12408 ENSMUSG00000029993.16 ENSMUSG00000029993 ENSMUST00000204103 Nfu1 protein_coding Interval_119487 chr4 137882802 137883943 + 0 NA promoter-TSS (ENSMUSG00000085823.7) antisense-promoter-TSS (ENSMUSG00000085823.7) 565 ENSMUSG00000085823.7 ENSMUSG00000085823 ENSMUST00000156022 Gm13012 antisense Interval_129897 chr5 122977794 122978481 + 0 NA intron (ENSMUSG00000029475.17, intron 4 of 10) protein_coding-intron (ENSMUSG00000029475.17, intron 4 of 22) -11217 ENSMUSG00000056735.5 ENSMUSG00000056735 ENSMUST00000148466 A930024E05Rik antisense Interval_136469 chr6 54718956 54719775 + 0 NA Intergenic Intergenic 25719 ENSMUSG00000108283.1 ENSMUSG00000108283 ENSMUST00000204345 Gm44008 TEC Interval_94765 chr2 94129945 94130672 + 0 NA intron (ENSMUSG00000027195.10, intron 1 of 2) protein_coding-intron (ENSMUSG00000027195.10, intron 1 of 10) 53822 ENSMUSG00000093033.1 ENSMUSG00000093033 ENSMUST00000175292 Gm23630 miRNA Interval_91438 chr2 38878516 38878781 + 0 NA intron (ENSMUSG00000063972.13, intron 3 of 11) protein_coding-intron (ENSMUSG00000063972.13, intron 2 of 10) 16485 ENSMUSG00000107468.1 ENSMUSG00000107468 ENSMUST00000204297 5730507A11Rik TEC Interval_90171 chr2 28715033 28715602 + 0 NA intron (ENSMUSG00000026807.8, intron 5 of 7) protein_coding-intron (ENSMUSG00000026807.8, intron 4 of 12) -15643 ENSMUSG00000026809.15 ENSMUSG00000026809 ENSMUST00000145014 Spaca9 protein_coding Interval_75033 chr17 61734164 61734510 + 0 NA Intergenic Intergenic 47295 ENSMUSG00000098123.1 ENSMUSG00000098123 ENSMUST00000182638 Gm4518 processed_pseudogene Interval_79967 chr18 36328269 36329239 + 0 NA Intergenic Intergenic -13826 ENSMUSG00000046727.13 ENSMUSG00000046727 ENSMUST00000144158 Cystm1 protein_coding Interval_150907 chr7 116273415 116274969 + 0 NA intron (ENSMUSG00000045659.18, intron 3 of 18) protein_coding-intron (ENSMUSG00000045659.18, intron 3 of 26) 8551 ENSMUSG00000108650.1 ENSMUSG00000108650 ENSMUST00000205675 Gm44867 sense_intronic Interval_106165 chr3 94260364 94261021 + 0 NA Intergenic Intergenic -3344 ENSMUSG00000089696.3 ENSMUSG00000089696 ENSMUST00000098878 Spopfm1 protein_coding Interval_54631 chr14 72505169 72505367 + 0 NA Intergenic Intergenic -13430 ENSMUSG00000109446.1 ENSMUSG00000109446 ENSMUST00000208955 Gm9195 protein_coding Interval_157162 chr8 66687400 66688534 + 0 NA promoter-TSS (ENSMUSG00000044014.9) protein_coding-promoter-TSS (ENSMUSG00000044014.9) 80 ENSMUSG00000044014.9 ENSMUSG00000044014 ENSMUST00000211920 Npy5r protein_coding Interval_31482 chr11 100947309 100948198 + 0 NA Intergenic Intergenic 22798 ENSMUSG00000004044.9 ENSMUSG00000004044 ENSMUST00000132934 Cavin1 protein_coding Interval_155660 chr8 35825511 35827083 + 0 NA promoter-TSS (ENSMUSG00000055976.6) protein_coding-promoter-TSS (ENSMUSG00000055976.6) -722 ENSMUSG00000055976.6 ENSMUSG00000055976 ENSMUST00000210370 Cldn23 protein_coding Interval_80506 chr18 43032005 43032563 + 0 NA intron (ENSMUSG00000117792.1, intron 2 of 3) protein_coding-intron (ENSMUSG00000024500.20, intron 1 of 8) 38122 ENSMUSG00000094137.1 ENSMUSG00000094137 ENSMUST00000178200 Gm22264 snRNA Interval_154914 chr8 25016399 25017825 + 0 NA promoter-TSS (ENSMUSG00000031556.6) protein_coding-promoter-TSS (ENSMUSG00000031556.6) -147 ENSMUSG00000031556.6 ENSMUSG00000031556 ENSMUST00000210536 Tm2d2 protein_coding Interval_49871 chr13 117436846 117437047 + 0 NA Intergenic Intergenic 22129 ENSMUSG00000114358.1 ENSMUSG00000114358 ENSMUST00000223786 Gm5200 processed_pseudogene Interval_41524 chr12 115967661 115967876 + 0 NA Intergenic Intergenic -3518 ENSMUSG00000105757.1 ENSMUSG00000105757 ENSMUST00000199643 Ighv1-83 IG_V_pseudogene Interval_71119 chr17 18800535 18800897 + 0 NA Intergenic Intergenic -10119 ENSMUSG00000093531.3 ENSMUSG00000093531 ENSMUST00000176899 Vmn2r-ps117 unprocessed_pseudogene Interval_140109 chr6 114275948 114276381 + 0 NA Intergenic Intergenic -6626 ENSMUSG00000030310.10 ENSMUSG00000030310 ENSMUST00000204540 Slc6a1 protein_coding Interval_77206 chr17 87346078 87346304 + 0 NA intron (ENSMUSG00000036918.16, intron 13 of 18) protein_coding-intron (ENSMUSG00000036918.16, intron 14 of 19) -14139 ENSMUSG00000089701.1 ENSMUSG00000089701 ENSMUST00000161043 Gm15978 antisense Interval_102009 chr3 14929201 14929983 + 0 NA Intergenic Intergenic -41609 ENSMUSG00000098008.1 ENSMUSG00000098008 ENSMUST00000182586 A930001A20Rik lincRNA Interval_71496 chr17 24159708 24160479 + 0 NA intron (ENSMUSG00000036820.12, intron 3 of 9) protein_coding-intron (ENSMUSG00000036820.12, intron 3 of 10) -2058 ENSMUSG00000036820.12 ENSMUSG00000036820 ENSMUST00000131766 Amdhd2 protein_coding Interval_163597 chr9 22432836 22434908 + 0 NA exon (ENSMUSG00000036411.10, exon 2 of 5) protein_coding-exon (ENSMUSG00000036411.10, exon 2 of 5) -20418 ENSMUSG00000091159.1 ENSMUSG00000091159 ENSMUST00000168332 Gm17545 protein_coding Interval_63710 chr15 102975702 102977679 + 0 NA promoter-TSS (ENSMUSG00000036139.6) protein_coding-promoter-TSS (ENSMUSG00000036139.6) 251 ENSMUSG00000036139.6 ENSMUSG00000036139 ENSMUST00000001706 Hoxc9 protein_coding Interval_151759 chr7 126474479 126475926 + 0 NA promoter-TSS (ENSMUSG00000030733.10) protein_coding-promoter-TSS (ENSMUSG00000030733.10) -2134 ENSMUSG00000030733.10 ENSMUSG00000030733 ENSMUST00000206643 Sh2b1 protein_coding Interval_50211 chr14 10049289 10050411 + 0 NA intron (ENSMUSG00000060579.13, intron 1 of 5) protein_coding-intron (ENSMUSG00000060579.13, intron 5 of 9) -31179 ENSMUSG00000114467.1 ENSMUSG00000114467 ENSMUST00000223773 Gm48430 TEC Interval_70790 chr17 14539703 14540453 + 0 NA Intergenic Intergenic 90507 ENSMUSG00000116801.1 ENSMUSG00000116801 ENSMUST00000232609 Gm38551 lincRNA Interval_145867 chr7 40861790 40862569 + 0 NA intron (ENSMUSG00000100600.6, intron 2 of 2) antisense-intron (ENSMUSG00000100600.6, intron 4 of 4) -14364 ENSMUSG00000101643.1 ENSMUSG00000101643 ENSMUST00000190685 Gm28307 lincRNA Interval_137903 chr6 83268154 83269141 + 0 NA intron (ENSMUSG00000068323.12, intron 12 of 26) protein_coding-intron (ENSMUSG00000068323.12, intron 10 of 24) -8746 ENSMUSG00000068323.12 ENSMUSG00000068323 ENSMUST00000131432 Slc4a5 protein_coding Interval_94400 chr2 90756608 90756818 + 0 NA promoter-TSS (ENSMUSG00000008200.15) protein_coding-promoter-TSS (ENSMUSG00000008200.15) -8750 ENSMUSG00000080873.3 ENSMUSG00000080873 ENSMUST00000117928 Rpl30-ps3 processed_pseudogene Interval_14361 chr10 31516317 31516533 + 0 NA intron (ENSMUSG00000063760.9, intron 3 of 5) protein_coding-intron (ENSMUSG00000063760.9, intron 3 of 5) 41015 ENSMUSG00000112338.1 ENSMUSG00000112338 ENSMUST00000219494 Gm47693 TEC Interval_47965 chr13 94706550 94708163 + 0 NA Intergenic Intergenic -4638 ENSMUSG00000113904.1 ENSMUSG00000113904 ENSMUST00000220503 Gm32351 lincRNA Interval_173437 chrX 93663628 93665172 + 0 NA intron (ENSMUSG00000035246.16, intron 1 of 7) protein_coding-intron (ENSMUSG00000035246.16, intron 1 of 7) 25786 ENSMUSG00000087255.2 ENSMUSG00000087255 ENSMUST00000121255 Gm6985 processed_pseudogene Interval_102591 chr3 28041828 28042093 + 0 NA intron (ENSMUSG00000027695.16, intron 1 of 2) protein_coding-intron (ENSMUSG00000027695.16, intron 8 of 25) -37230 ENSMUSG00000027695.16 ENSMUSG00000027695 ENSMUST00000126594 Pld1 protein_coding Interval_121736 chr5 6049456 6049673 + 0 NA Intergenic Intergenic -34540 ENSMUSG00000088692.1 ENSMUSG00000088692 ENSMUST00000158067 Gm23838 snRNA Interval_31423 chr11 100584611 100585807 + 0 NA exon (ENSMUSG00000014195.16, exon 1 of 4) protein_coding-exon (ENSMUSG00000014195.16, exon 1 of 4) 9685 ENSMUSG00000006782.16 ENSMUSG00000006782 ENSMUST00000147403 Cnp protein_coding Interval_27716 chr11 69632449 69633521 + 0 NA promoter-TSS (ENSMUSG00000018765.5) protein_coding-promoter-TSS (ENSMUSG00000018765.5) -1282 ENSMUSG00000083300.1 ENSMUSG00000083300 ENSMUST00000119889 Gm12309 processed_pseudogene Interval_160328 chr8 108440051 108441554 + 0 NA intron (ENSMUSG00000038872.10, intron 3 of 15) protein_coding-intron (ENSMUSG00000038872.10, intron 3 of 15) 96419 ENSMUSG00000109868.1 ENSMUSG00000109868 ENSMUST00000211262 Gm39244 lincRNA Interval_136036 chr6 50179048 50179522 + 0 NA intron (ENSMUSG00000038388.14, intron 6 of 11) protein_coding-intron (ENSMUSG00000038388.14, intron 8 of 13) 69007 ENSMUSG00000038388.14 ENSMUSG00000038388 ENSMUST00000167319 Mpp6 protein_coding Interval_105767 chr3 89233661 89235622 + 0 NA TTS (ENSMUSG00000042766.17) protein_coding-TTS (ENSMUSG00000042766.17) 3402 ENSMUSG00000042784.9 ENSMUSG00000042784 ENSMUST00000139206 Muc1 protein_coding Interval_77948 chr18 6010168 6010689 + 0 NA Intergenic Intergenic 4593 ENSMUSG00000117548.1 ENSMUSG00000117548 ENSMUST00000234469 Gm41662 TEC Interval_82707 chr18 76096672 76097073 + 0 NA intron (ENSMUSG00000117797.1, intron 1 of 2) protein_coding-intron (ENSMUSG00000044646.15, intron 3 of 4) 1599 ENSMUSG00000117797.1 ENSMUSG00000117797 ENSMUST00000236092 2900057B20Rik antisense Interval_1747 chr1 33499857 33500362 + 0 NA intron (ENSMUSG00000026134.11, intron 4 of 5) protein_coding-intron (ENSMUSG00000026134.11, intron 10 of 13) 18008 ENSMUSG00000101682.1 ENSMUSG00000101682 ENSMUST00000185489 Gm29228 processed_pseudogene Interval_142398 chr6 141499488 141499730 + 0 NA exon (ENSMUSG00000041741.10, exon 16 of 16) protein_coding-exon (ENSMUSG00000041741.10, exon 16 of 16) -24790 ENSMUSG00000030235.17 ENSMUSG00000030235 ENSMUST00000203755 Slco1c1 protein_coding Interval_169814 chr9 102089276 102090142 + 0 NA intron (ENSMUSG00000032537.15, intron 3 of 4) protein_coding-intron (ENSMUSG00000032537.15, intron 3 of 15) -33152 ENSMUSG00000104041.1 ENSMUSG00000104041 ENSMUST00000194763 Gm37562 TEC Interval_47561 chr13 88722979 88723200 + 0 NA Intergenic Intergenic -98399 ENSMUSG00000034488.14 ENSMUSG00000034488 ENSMUST00000043111 Edil3 protein_coding Interval_157820 chr8 74249725 74250237 + 0 NA Intergenic Intergenic -20266 ENSMUSG00000098378.1 ENSMUSG00000098378 ENSMUST00000183704 Gm27864 miRNA Interval_167648 chr9 71510139 71511814 + 0 NA intron (ENSMUSG00000041361.13, intron 11 of 11) protein_coding-intron (ENSMUSG00000041361.13, intron 12 of 12) -25071 ENSMUSG00000032199.13 ENSMUSG00000032199 ENSMUST00000233263 Polr2m protein_coding Interval_20459 chr10 117730783 117732739 + 0 NA Intergenic Intergenic 13181 ENSMUSG00000060181.6 ENSMUSG00000060181 ENSMUST00000219482 Slc35e3 protein_coding Interval_63831 chr16 3846855 3847548 + 0 NA promoter-TSS (ENSMUSG00000054939.6) protein_coding-promoter-TSS (ENSMUSG00000054939.6) -67 ENSMUSG00000054939.6 ENSMUSG00000054939 ENSMUST00000041778 Zfp174 protein_coding Interval_55319 chr14 82542467 82543283 + 0 NA Intergenic Intergenic -158346 ENSMUSG00000089266.1 ENSMUSG00000089266 ENSMUST00000158641 Gm22891 snRNA Interval_91878 chr2 50964845 50965968 + 0 NA Intergenic Intergenic 55722 ENSMUSG00000083270.1 ENSMUSG00000083270 ENSMUST00000119159 Gm13498 processed_pseudogene Interval_46982 chr13 73924439 73925790 + 0 NA promoter-TSS (ENSMUSG00000095943.1) miRNA-promoter-TSS (ENSMUSG00000095943.1) -404 ENSMUSG00000095943.1 ENSMUSG00000095943 ENSMUST00000175516 Gm25197 miRNA Interval_46267 chr13 63231289 63232105 + 0 NA intron (ENSMUSG00000021458.17, intron 3 of 5) protein_coding-intron (ENSMUSG00000021458.17, intron 10 of 15) -12524 ENSMUSG00000113326.1 ENSMUSG00000113326 ENSMUST00000220806 Gm47586 TEC Interval_53930 chr14 63476681 63476981 + 0 NA Intergenic Intergenic -1455 ENSMUSG00000114258.1 ENSMUSG00000114258 ENSMUST00000226020 Gm47074 processed_pseudogene Interval_98060 chr2 147307692 147308273 + 0 NA TTS (ENSMUSG00000098763.1) misc_RNA-TTS (ENSMUSG00000098763.1) 801 ENSMUSG00000098763.1 ENSMUSG00000098763 ENSMUST00000184407 Nkx2-2os misc_RNA Interval_53874 chr14 63024984 63026083 + 0 NA exon (ENSMUSG00000114260.1, exon 1 of 1) processed_pseudogene-exon (ENSMUSG00000114260.1, exon 1 of 1) 364 ENSMUSG00000114260.1 ENSMUSG00000114260 ENSMUST00000224334 Gm19198 processed_pseudogene Interval_51848 chr14 32856398 32857405 + 0 NA exon (ENSMUSG00000050666.14, exon 1 of 8) protein_coding-exon (ENSMUSG00000050666.14, exon 1 of 8) 145 ENSMUSG00000050666.14 ENSMUSG00000050666 ENSMUST00000053175 Vstm4 protein_coding Interval_53797 chr14 61875847 61876302 + 0 NA Intergenic Intergenic -45302 ENSMUSG00000114706.1 ENSMUSG00000114706 ENSMUST00000224682 Gm47952 processed_pseudogene Interval_74786 chr17 56524225 56524841 + 0 NA Intergenic Intergenic -12102 ENSMUSG00000044526.3 ENSMUSG00000044526 ENSMUST00000052211 Znrf4 protein_coding Interval_122183 chr5 19138674 19139047 + 0 NA Intergenic Intergenic 62745 ENSMUSG00000106498.1 ENSMUSG00000106498 ENSMUST00000197967 Gm43032 TEC Interval_100162 chr2 167404856 167405917 + 0 NA Intergenic Intergenic -45669 ENSMUSG00000039463.14 ENSMUSG00000039463 ENSMUST00000148454 Slc9a8 protein_coding Interval_907 chr1 13093526 13096488 + 0 NA Intergenic Intergenic 26169 ENSMUSG00000099498.1 ENSMUSG00000099498 ENSMUST00000187394 Gm29283 lincRNA Interval_46879 chr13 73053061 73053351 + 0 NA Intergenic Intergenic -180189 ENSMUSG00000113952.1 ENSMUSG00000113952 ENSMUST00000223231 Rpl31-ps2 processed_pseudogene Interval_161004 chr8 116827152 116827585 + 0 NA Intergenic Intergenic -61889 ENSMUSG00000074072.2 ENSMUSG00000074072 ENSMUST00000098379 Gm10620 pseudogene Interval_73801 chr17 43824817 43825828 + 0 NA intron (ENSMUSG00000039601.16, intron 1 of 4) protein_coding-intron (ENSMUSG00000039601.16, intron 1 of 4) 126959 ENSMUSG00000084474.1 ENSMUSG00000084474 ENSMUST00000122525 Gm25783 snRNA Interval_161665 chr8 121887367 121888317 + 0 NA TTS (ENSMUSG00000040010.10) protein_coding-TTS (ENSMUSG00000040010.10) 8660 ENSMUSG00000040010.10 ENSMUSG00000040010 ENSMUST00000183015 Slc7a5 protein_coding Interval_33396 chr11 116342150 116342614 + 0 NA intron (ENSMUSG00000052949.14, intron 3 of 4) protein_coding-intron (ENSMUSG00000052949.14, intron 18 of 18) 5536 ENSMUSG00000052949.14 ENSMUSG00000052949 ENSMUST00000149682 Rnf157 protein_coding Interval_132534 chr5 145930144 145931523 + 0 NA Intergenic Intergenic -11955 ENSMUSG00000105405.1 ENSMUSG00000105405 ENSMUST00000196880 Gm42431 processed_pseudogene Interval_77603 chr17 92892659 92893222 + 0 NA Intergenic Intergenic -83581 ENSMUSG00000117409.1 ENSMUSG00000117409 ENSMUST00000234475 Gm49996 processed_pseudogene Interval_60060 chr15 64340318 64340649 + 0 NA intron (ENSMUSG00000022377.16, intron 2 of 30) protein_coding-intron (ENSMUSG00000022377.16, intron 2 of 30) -11466 ENSMUSG00000115646.1 ENSMUSG00000115646 ENSMUST00000228336 Gm10926 TEC Interval_138444 chr6 88242261 88243301 + 0 NA intron (ENSMUSG00000048206.6, intron 2 of 3) protein_coding-intron (ENSMUSG00000048206.6, intron 2 of 3) -19142 ENSMUSG00000047046.8 ENSMUSG00000047046 ENSMUST00000156018 1700031F10Rik antisense Interval_171285 chr9 116059067 116059353 + 0 NA intron (ENSMUSG00000056880.12, intron 13 of 13) protein_coding-intron (ENSMUSG00000056880.12, intron 14 of 14) -18146 ENSMUSG00000080848.3 ENSMUSG00000080848 ENSMUST00000117563 Gm9385 processed_pseudogene Interval_17468 chr10 77082034 77083000 + 0 NA intron (ENSMUSG00000001435.15, intron 4 of 5) protein_coding-intron (ENSMUSG00000001435.15, intron 5 of 40) -22520 ENSMUSG00000001435.15 ENSMUSG00000001435 ENSMUST00000156009 Col18a1 protein_coding Interval_69684 chr16 95543608 95543984 + 0 NA intron (ENSMUSG00000040732.20, intron 1 of 10) protein_coding-intron (ENSMUSG00000040732.20, intron 1 of 10) -13431 ENSMUSG00000040732.20 ENSMUSG00000040732 ENSMUST00000121809 Erg protein_coding Interval_112457 chr4 41367998 41368164 + 0 NA intron (ENSMUSG00000028437.14, intron 2 of 5) protein_coding-intron (ENSMUSG00000028437.14, intron 2 of 6) -3167 ENSMUSG00000028437.14 ENSMUSG00000028437 ENSMUST00000132235 Ubap1 protein_coding Interval_8792 chr1 151171600 151172415 + 0 NA Intergenic Intergenic -10530 ENSMUSG00000114212.1 ENSMUSG00000114212 ENSMUST00000225278 Gm47985 protein_coding Interval_117175 chr4 120251608 120253185 + 0 NA Intergenic Intergenic 34953 ENSMUSG00000052135.8 ENSMUSG00000052135 ENSMUST00000102656 Foxo6 protein_coding Interval_38605 chr12 80470073 80470301 + 0 NA intron (ENSMUSG00000032705.9, intron 1 of 2) protein_coding-intron (ENSMUSG00000032705.9, intron 1 of 8) -20703 ENSMUSG00000032705.9 ENSMUSG00000032705 ENSMUST00000219757 Exd2 protein_coding Interval_122433 chr5 22572505 22575151 + 0 NA intron (ENSMUSG00000097207.7, intron 2 of 5) lincRNA-intron (ENSMUSG00000097207.7, intron 2 of 4) 9871 ENSMUSG00000105156.1 ENSMUSG00000105156 ENSMUST00000198791 Gm9057 processed_pseudogene Interval_117589 chr4 124870893 124871137 + 0 NA Intergenic Intergenic -8844 ENSMUSG00000042763.9 ENSMUSG00000042763 ENSMUST00000064444 Maneal protein_coding Interval_46869 chr13 72865701 72866598 + 0 NA Intergenic Intergenic -49386 ENSMUSG00000113082.1 ENSMUSG00000113082 ENSMUST00000223149 D730050B12Rik lincRNA Interval_77929 chr18 5653724 5653952 + 0 NA intron (ENSMUSG00000024238.15, intron 2 of 5) protein_coding-intron (ENSMUSG00000024238.15, intron 1 of 7) 39365 ENSMUSG00000080543.1 ENSMUSG00000080543 ENSMUST00000116893 Gm22709 miRNA Interval_83112 chr18 81470738 81471368 + 0 NA Intergenic Intergenic -9304 ENSMUSG00000118300.1 ENSMUSG00000118300 ENSMUST00000237597 Gm50412 lincRNA Interval_113914 chr4 59831025 59831324 + 0 NA intron (ENSMUSG00000028385.14, intron 1 of 8) protein_coding-intron (ENSMUSG00000028385.14, intron 1 of 8) -2503 ENSMUSG00000080772.1 ENSMUSG00000080772 ENSMUST00000120410 Gm12543 transcribed_processed_pseudogene Interval_143562 chr7 12834268 12835617 + 0 NA promoter-TSS (ENSMUSG00000058638.14) protein_coding-promoter-TSS (ENSMUSG00000058638.14) -541 ENSMUSG00000058638.14 ENSMUSG00000058638 ENSMUST00000137718 Zfp110 protein_coding Interval_6383 chr1 106683053 106683338 + 0 NA intron (ENSMUSG00000057329.7, intron 1 of 1) protein_coding-intron (ENSMUSG00000057329.7, intron 1 of 1) 29984 ENSMUSG00000057329.7 ENSMUSG00000057329 ENSMUST00000189999 Bcl2 protein_coding Interval_93237 chr2 71366751 71368075 + 0 NA intron (ENSMUSG00000027010.16, intron 1 of 16) protein_coding-intron (ENSMUSG00000027010.16, intron 1 of 17) 120 ENSMUSG00000027010.16 ENSMUSG00000027010 ENSMUST00000146653 Slc25a12 protein_coding Interval_47077 chr13 75408373 75408970 + 0 NA Intergenic Intergenic 70716 ENSMUSG00000113821.1 ENSMUSG00000113821 ENSMUST00000221326 Gm48234 processed_pseudogene Interval_111491 chr4 22121067 22121854 + 0 NA Intergenic Intergenic -3928 ENSMUSG00000082490.1 ENSMUSG00000082490 ENSMUST00000117612 Gm11880 processed_pseudogene Interval_6109 chr1 97085922 97086127 + 0 NA intron (ENSMUSG00000026331.13, intron 7 of 13) protein_coding-intron (ENSMUSG00000026331.13, intron 7 of 13) 42277 ENSMUSG00000026331.13 ENSMUSG00000026331 ENSMUST00000189547 Slco6c1 protein_coding Interval_101642 chr3 8461860 8463070 + 0 NA exon (ENSMUSG00000102463.1, exon 1 of 1) processed_pseudogene-exon (ENSMUSG00000102463.1, exon 1 of 1) 570 ENSMUSG00000102463.1 ENSMUSG00000102463 ENSMUST00000194834 1700003N22Rik processed_pseudogene Interval_148887 chr7 89848477 89848866 + 0 NA exon (ENSMUSG00000030621.17, exon 6 of 9) protein_coding-exon (ENSMUSG00000030621.17, exon 6 of 9) 21453 ENSMUSG00000109150.1 ENSMUSG00000109150 ENSMUST00000207900 Gm45793 TEC Interval_95858 chr2 117328504 117328861 + 0 NA intron (ENSMUSG00000027347.18, intron 2 of 16) protein_coding-intron (ENSMUSG00000027347.18, intron 2 of 16) 14195 ENSMUSG00000027347.18 ENSMUSG00000027347 ENSMUST00000110898 Rasgrp1 protein_coding Interval_95183 chr2 104588656 104590958 + 0 NA promoter-TSS (ENSMUSG00000027176.8) protein_coding-promoter-TSS (ENSMUSG00000027176.8) -811 ENSMUSG00000027176.8 ENSMUSG00000027176 ENSMUST00000126539 Cstf3 protein_coding Interval_63931 chr16 4629150 4630431 + 0 NA promoter-TSS (ENSMUSG00000039637.15) protein_coding-promoter-TSS (ENSMUSG00000039637.15) 4069 ENSMUSG00000039637.15 ENSMUSG00000039637 ENSMUST00000127850 Coro7 protein_coding Interval_67748 chr16 56834807 56836450 + 0 NA intron (ENSMUSG00000022754.6, intron 1 of 5) protein_coding-intron (ENSMUSG00000022754.6, intron 1 of 5) 32087 ENSMUSG00000022754.6 ENSMUSG00000022754 ENSMUST00000135672 Tmem45a protein_coding Interval_58532 chr15 35825979 35826169 + 0 NA intron (ENSMUSG00000037646.10, intron 39 of 61) protein_coding-intron (ENSMUSG00000037646.10, intron 39 of 61) -29320 ENSMUSG00000115340.1 ENSMUSG00000115340 ENSMUST00000226372 Gm48965 TEC Interval_19610 chr10 105753483 105754678 + 0 NA Intergenic Intergenic 50117 ENSMUSG00000084545.1 ENSMUSG00000084545 ENSMUST00000122596 n-R5s80 rRNA Interval_37161 chr12 59075912 59076843 + 0 NA Intergenic Intergenic -4642 ENSMUSG00000066487.3 ENSMUSG00000066487 ENSMUST00000085368 Gm5786 processed_pseudogene Interval_88715 chr2 9949609 9950286 + 0 NA intron (ENSMUSG00000025782.12, intron 1 of 4) protein_coding-intron (ENSMUSG00000025782.12, intron 3 of 6) -8196 ENSMUSG00000025782.12 ENSMUSG00000025782 ENSMUST00000114907 Taf3 protein_coding Interval_141833 chr6 134807551 134807840 + 0 NA Intergenic Intergenic -28149 ENSMUSG00000108233.1 ENSMUSG00000108233 ENSMUST00000203947 Gm44084 processed_pseudogene Interval_133257 chr5 150904268 150904967 + 0 NA Intergenic Intergenic -21975 ENSMUSG00000107047.1 ENSMUSG00000107047 ENSMUST00000200887 Gm43298 lincRNA Interval_85845 chr19 32318215 32320678 + 0 NA intron (ENSMUSG00000040451.18, intron 2 of 2) protein_coding-intron (ENSMUSG00000040451.18, intron 2 of 9) -42482 ENSMUSG00000040451.18 ENSMUSG00000040451 ENSMUST00000141252 Sgms1 protein_coding Interval_74478 chr17 51680892 51681138 + 0 NA Intergenic Intergenic 67669 ENSMUSG00000102973.1 ENSMUSG00000102973 ENSMUST00000194215 E430014B02Rik TEC Interval_161492 chr8 120702109 120702632 + 0 NA intron (ENSMUSG00000092329.1, intron 1 of 15) protein_coding-intron (ENSMUSG00000092329.1, intron 1 of 15) 15384 ENSMUSG00000088416.1 ENSMUSG00000088416 ENSMUST00000157791 Gm24239 misc_RNA Interval_94086 chr2 83738298 83740094 + 0 NA exon (ENSMUSG00000027087.11, exon 3 of 3) processed_transcript-intron (ENSMUSG00000085335.1, intron 1 of 1) 6540 ENSMUSG00000081801.1 ENSMUSG00000081801 ENSMUST00000118734 Dnmt3l-ps1 processed_pseudogene Interval_161785 chr8 122760310 122760852 + 0 NA TTS (ENSMUSG00000110682.1) lincRNA-TTS (ENSMUSG00000110682.1) 2180 ENSMUSG00000110682.1 ENSMUSG00000110682 ENSMUST00000212247 A530010L16Rik lincRNA Interval_115828 chr4 105105903 105106149 + 0 NA intron (ENSMUSG00000028518.8, intron 1 of 8) protein_coding-intron (ENSMUSG00000028518.8, intron 1 of 8) 3864 ENSMUSG00000028518.8 ENSMUSG00000028518 ENSMUST00000030243 Prkaa2 protein_coding Interval_12941 chr10 8376094 8376321 + 0 NA intron (ENSMUSG00000047712.8, intron 2 of 7) protein_coding-intron (ENSMUSG00000047712.8, intron 2 of 7) -73965 ENSMUSG00000047712.8 ENSMUSG00000047712 ENSMUST00000061601 Ust protein_coding Interval_29106 chr11 80365633 80366008 + 0 NA intron (ENSMUSG00000057181.15, intron 8 of 9) protein_coding-intron (ENSMUSG00000057181.15, intron 8 of 9) 12195 ENSMUSG00000057181.15 ENSMUSG00000057181 ENSMUST00000134274 5730455P16Rik protein_coding Interval_159226 chr8 91928814 91929079 + 0 NA Intergenic Intergenic -15880 ENSMUSG00000099812.1 ENSMUSG00000099812 ENSMUST00000189823 Gm28515 lincRNA Interval_52402 chr14 45638924 45639244 + 0 NA intron (ENSMUSG00000037697.19, intron 1 of 2) protein_coding-intron (ENSMUSG00000037697.19, intron 1 of 11) -6721 ENSMUSG00000037697.19 ENSMUSG00000037697 ENSMUST00000226559 Ddhd1 protein_coding Interval_49671 chr13 113888372 113890484 + 0 NA intron (ENSMUSG00000042348.10, intron 1 of 3) protein_coding-intron (ENSMUSG00000042348.10, intron 1 of 4) 94835 ENSMUSG00000042348.10 ENSMUSG00000042348 ENSMUST00000224068 Arl15 protein_coding Interval_65921 chr16 30262540 30263354 + 0 NA intron (ENSMUSG00000023176.9, intron 1 of 1) protein_coding-intron (ENSMUSG00000023176.9, intron 1 of 1) 4552 ENSMUSG00000023176.9 ENSMUSG00000023176 ENSMUST00000064856 Cpn2 protein_coding Interval_144120 chr7 19515130 19515344 + 0 NA TTS (ENSMUSG00000002043.17) protein_coding-TTS (ENSMUSG00000002043.17) -3494 ENSMUSG00000060621.6 ENSMUSG00000060621 ENSMUST00000214205 Nkpd1 protein_coding Interval_115869 chr4 105348074 105348315 + 0 NA Intergenic Intergenic 26752 ENSMUSG00000081819.1 ENSMUSG00000081819 ENSMUST00000118507 Gm12722 processed_pseudogene Interval_125465 chr5 67379415 67380273 + 0 NA Intergenic Intergenic 14339 ENSMUSG00000107266.1 ENSMUSG00000107266 ENSMUST00000202864 Gm43698 lincRNA Interval_110921 chr4 10239210 10239431 + 0 NA Intergenic Intergenic 200423 ENSMUSG00000084215.3 ENSMUSG00000084215 ENSMUST00000119515 Gm11814 processed_pseudogene Interval_149998 chr7 104446087 104446799 + 0 NA intron (ENSMUSG00000030921.17, intron 1 of 7) protein_coding-intron (ENSMUSG00000030921.17, intron 1 of 7) 23169 ENSMUSG00000064907.1 ENSMUSG00000064907 ENSMUST00000082973 Gm25405 snRNA Interval_103706 chr3 51785494 51785977 + 0 NA intron (ENSMUSG00000061143.15, intron 2 of 4) protein_coding-intron (ENSMUSG00000061143.15, intron 1 of 3) 10839 ENSMUSG00000061143.15 ENSMUSG00000061143 ENSMUST00000193568 Maml3 protein_coding Interval_162275 chr8 126602689 126604013 + 0 NA Intergenic Intergenic -9365 ENSMUSG00000051495.7 ENSMUSG00000051495 ENSMUST00000054960 Irf2bp2 protein_coding Interval_55664 chr14 98599993 98600462 + 0 NA Intergenic Intergenic -23963 ENSMUSG00000096444.1 ENSMUSG00000096444 ENSMUST00000180098 Gm26139 snRNA Interval_51559 chr14 30170967 30171179 + 0 NA intron (ENSMUSG00000015968.18, intron 1 of 8) protein_coding-intron (ENSMUSG00000015968.18, intron 8 of 48) -36665 ENSMUSG00000114650.1 ENSMUSG00000114650 ENSMUST00000224405 Gm47570 processed_pseudogene Interval_117456 chr4 123818713 123820019 + 0 NA intron (ENSMUSG00000043333.12, intron 3 of 6) protein_coding-intron (ENSMUSG00000043333.12, intron 4 of 7) -18738 ENSMUSG00000082310.1 ENSMUSG00000082310 ENSMUST00000117451 Gm12904 processed_pseudogene Interval_168452 chr9 80786331 80786508 + 0 NA Intergenic Intergenic -16232 ENSMUSG00000098685.1 ENSMUSG00000098685 ENSMUST00000184749 Gm27224 lincRNA Interval_15886 chr10 58804541 58804812 + 0 NA Intergenic Intergenic 8466 ENSMUSG00000055958.3 ENSMUSG00000055958 ENSMUST00000069768 Gm9987 pseudogene Interval_7011 chr1 121977542 121977931 + 0 NA Intergenic Intergenic -7212 ENSMUSG00000083584.1 ENSMUSG00000083584 ENSMUST00000119656 Gm15394 processed_pseudogene Interval_43596 chr13 33988349 33990119 + 0 NA TTS (ENSMUSG00000046949.16) protein_coding-TTS (ENSMUSG00000046949.16) 19097 ENSMUSG00000090628.1 ENSMUSG00000090628 ENSMUST00000165849 Gm17083 processed_pseudogene Interval_103576 chr3 50076916 50077300 + 0 NA intron (ENSMUSG00000027737.10, intron 11 of 11) protein_coding-intron (ENSMUSG00000027737.10, intron 11 of 11) 47439 ENSMUSG00000104457.1 ENSMUSG00000104457 ENSMUST00000195329 Gm37826 processed_pseudogene Interval_45274 chr13 53807851 53808694 + 0 NA Intergenic Intergenic 31645 ENSMUSG00000114143.1 ENSMUSG00000114143 ENSMUST00000221931 Gm48548 lincRNA Interval_67407 chr16 48373769 48374064 + 0 NA Intergenic Intergenic 5274 ENSMUSG00000116889.1 ENSMUSG00000116889 ENSMUST00000231810 Gm49771 processed_pseudogene Interval_51691 chr14 31413700 31414025 + 0 NA intron (ENSMUSG00000021892.14, intron 2 of 10) protein_coding-intron (ENSMUSG00000021892.14, intron 2 of 8) -6477 ENSMUSG00000021892.14 ENSMUSG00000021892 ENSMUST00000147586 Sh3bp5 protein_coding Interval_125727 chr5 73632449 73633414 + 0 NA promoter-TSS (ENSMUSG00000067206.3) protein_coding-promoter-TSS (ENSMUSG00000067206.3) -2619 ENSMUSG00000067206.3 ENSMUSG00000067206 ENSMUST00000152215 Lrrc66 protein_coding Interval_111551 chr4 22892047 22892538 + 0 NA Intergenic Intergenic 46143 ENSMUSG00000028244.6 ENSMUSG00000028244 ENSMUST00000123729 1700025O08Rik lincRNA Interval_89875 chr2 26147567 26148276 + 0 NA Intergenic Intergenic -9119 ENSMUSG00000087679.2 ENSMUSG00000087679 ENSMUST00000163836 Tmem250-ps protein_coding Interval_49936 chr13 118504618 118505093 + 0 NA Intergenic Intergenic 6058 ENSMUSG00000114668.1 ENSMUSG00000114668 ENSMUST00000225301 Gm47563 processed_pseudogene Interval_213 KQ030492.1 18130 18358 + 0 NA NA NA NA NA Interval_149800 chr7 101650335 101650962 + 0 NA Intergenic Intergenic -13125 ENSMUSG00000001829.17 ENSMUSG00000001829 ENSMUST00000150832 Clpb protein_coding Interval_63725 chr15 103058743 103061693 + 0 NA promoter-TSS (ENSMUSG00000102297.1) TEC-promoter-TSS (ENSMUSG00000102297.1) -912 ENSMUSG00000102297.1 ENSMUSG00000102297 ENSMUST00000193457 5730585A16Rik TEC Interval_135725 chr6 45237746 45237946 + 0 NA intron (ENSMUSG00000039419.17, intron 2 of 3) protein_coding-intron (ENSMUSG00000039419.17, intron 1 of 23) -7791 ENSMUSG00000107779.1 ENSMUSG00000107779 ENSMUST00000204853 Gm43874 TEC Interval_37585 chr12 70083686 70083906 + 0 NA intron (ENSMUSG00000021068.17, intron 1 of 2) protein_coding-intron (ENSMUSG00000021068.17, intron 4 of 29) 6821 ENSMUSG00000021068.17 ENSMUSG00000021068 ENSMUST00000239242 Nin protein_coding Interval_133345 chr6 3530047 3530452 + 0 NA intron (ENSMUSG00000001376.17, intron 6 of 7) protein_coding-intron (ENSMUSG00000001376.17, intron 9 of 27) -42820 ENSMUSG00000044156.14 ENSMUSG00000044156 ENSMUST00000200972 Hepacam2 protein_coding Interval_50519 chr14 14573718 14575148 + 0 NA Intergenic Intergenic 14783 ENSMUSG00000114676.1 ENSMUSG00000114676 ENSMUST00000225279 Gm47678 processed_pseudogene Interval_70364 chr17 9031428 9032297 + 0 NA Intergenic Intergenic 43520 ENSMUSG00000023873.13 ENSMUSG00000023873 ENSMUST00000136954 1700010I14Rik protein_coding Interval_112606 chr4 43528019 43528760 + 0 NA Intergenic Intergenic -4624 ENSMUSG00000028464.16 ENSMUSG00000028464 ENSMUST00000150592 Tpm2 protein_coding Interval_20509 chr10 118110106 118110542 + 0 NA Intergenic Intergenic -2193 ENSMUSG00000112470.1 ENSMUSG00000112470 ENSMUST00000218667 5330439M10Rik lincRNA Interval_86916 chr19 44865268 44865489 + 0 NA Intergenic Intergenic 14369 ENSMUSG00000117967.1 ENSMUSG00000117967 ENSMUST00000236477 Gm5246 processed_pseudogene Interval_85033 chr19 21688228 21688853 + 0 NA Intergenic Intergenic 7906 ENSMUSG00000047368.4 ENSMUSG00000047368 ENSMUST00000236549 Abhd17b protein_coding Interval_11891 chr1 186784169 186784468 + 0 NA Intergenic Intergenic 34922 ENSMUSG00000097784.1 ENSMUSG00000097784 ENSMUST00000180869 A430105J06Rik lincRNA Interval_61885 chr15 84932233 84932922 + 0 NA intron (ENSMUSG00000016619.10, intron 4 of 8) protein_coding-intron (ENSMUSG00000016619.10, intron 3 of 7) 9128 ENSMUSG00000016619.10 ENSMUSG00000016619 ENSMUST00000230411 Nup50 protein_coding Interval_110411 chr3 157883673 157883874 + 0 NA Intergenic Intergenic 5101 ENSMUSG00000104862.1 ENSMUSG00000104862 ENSMUST00000200636 Gm6520 processed_pseudogene Interval_33923 chr11 119428418 119429296 + 0 NA intron (ENSMUSG00000070327.14, intron 19 of 66) protein_coding-intron (ENSMUSG00000070327.14, intron 19 of 66) 38385 ENSMUSG00000088015.1 ENSMUSG00000088015 ENSMUST00000157390 Mir1932 miRNA Interval_160992 chr8 116723280 116723581 + 0 NA intron (ENSMUSG00000031758.10, intron 1 of 6) protein_coding-intron (ENSMUSG00000031758.10, intron 1 of 6) 9561 ENSMUSG00000031758.10 ENSMUSG00000031758 ENSMUST00000109102 Cdyl2 protein_coding Interval_13240 chr10 13473569 13475316 + 0 NA promoter-TSS (ENSMUSG00000062866.16) protein_coding-promoter-TSS (ENSMUSG00000062866.16) -31595 ENSMUSG00000019810.15 ENSMUSG00000019810 ENSMUST00000166466 Fuca2 protein_coding Interval_147634 chr7 70369051 70370996 + 0 NA intron (ENSMUSG00000100005.7, intron 1 of 10) processed_transcript-intron (ENSMUSG00000100005.7, intron 1 of 10) 5113 ENSMUSG00000100005.7 ENSMUSG00000100005 ENSMUST00000207952 B130024G19Rik processed_transcript Interval_27634 chr11 69180034 69180279 + 0 NA Intergenic Intergenic 17228 ENSMUSG00000020891.11 ENSMUSG00000020891 ENSMUST00000156157 Alox8 protein_coding Interval_111103 chr4 12089107 12090085 + 0 NA exon (ENSMUSG00000052137.11, exon 1 of 3) protein_coding-exon (ENSMUSG00000052137.11, exon 1 of 3) 157 ENSMUSG00000052137.11 ENSMUSG00000052137 ENSMUST00000063839 Rbm12b2 protein_coding Interval_26653 chr11 59486060 59487483 + 0 NA exon (ENSMUSG00000020472.14, exon 10 of 10) protein_coding-exon (ENSMUSG00000020472.14, exon 10 of 10) 4798 ENSMUSG00000083234.1 ENSMUSG00000083234 ENSMUST00000119915 Gm12262 processed_pseudogene Interval_46005 chr13 59970522 59971684 + 0 NA Intergenic Intergenic 51665 ENSMUSG00000114308.1 ENSMUSG00000114308 ENSMUST00000225115 Gm48390 processed_pseudogene Interval_31050 chr11 97877396 97877760 + 0 NA intron (ENSMUSG00000070336.3, intron 3 of 10) protein_coding-intron (ENSMUSG00000070336.3, intron 3 of 10) -7016 ENSMUSG00000086917.1 ENSMUSG00000086917 ENSMUST00000152825 Gm11630 lincRNA Interval_236 KZ289068.1 257948 258565 + 0 NA NA NA NA NA Interval_82536 chr18 75000024 75001080 + 0 NA promoter-TSS (ENSMUSG00000062328.8) protein_coding-promoter-TSS (ENSMUSG00000062328.8) -506 ENSMUSG00000064871.1 ENSMUSG00000064871 ENSMUST00000082937 Snord58b snoRNA Interval_126635 chr5 91359616 91359903 + 0 NA intron (ENSMUSG00000082361.6, intron 4 of 4) protein_coding-intron (ENSMUSG00000082361.6, intron 5 of 5) 43063 ENSMUSG00000082361.6 ENSMUSG00000082361 ENSMUST00000201090 Btc protein_coding Interval_174054 chrX 133673508 133675735 + 0 NA intron (ENSMUSG00000051323.16, intron 2 of 4) protein_coding-intron (ENSMUSG00000051323.16, intron 2 of 4) 10370 ENSMUSG00000051323.16 ENSMUSG00000051323 ENSMUST00000193485 Pcdh19 protein_coding Interval_169829 chr9 102265618 102266129 + 0 NA intron (ENSMUSG00000032537.15, intron 1 of 4) protein_coding-intron (ENSMUSG00000032537.15, intron 1 of 15) -7863 ENSMUSG00000102702.1 ENSMUSG00000102702 ENSMUST00000193748 Gm37260 TEC Interval_8909 chr1 152036515 152036760 + 0 NA intron (ENSMUSG00000032666.16, intron 1 of 6) protein_coding-intron (ENSMUSG00000032666.16, intron 1 of 5) 53333 ENSMUSG00000032666.16 ENSMUSG00000032666 ENSMUST00000121533 1700025G04Rik protein_coding Interval_116635 chr4 116197053 116197529 + 0 NA intron (ENSMUSG00000111410.1, intron 1 of 9) protein_coding-intron (ENSMUSG00000111410.1, intron 1 of 9) 3661 ENSMUSG00000081459.3 ENSMUSG00000081459 ENSMUST00000121281 Llph-ps1 processed_pseudogene Interval_106765 chr3 100554491 100555113 + 0 NA Intergenic Intergenic 32725 ENSMUSG00000105824.1 ENSMUSG00000105824 ENSMUST00000197836 Gm43466 sense_intronic Interval_49128 chr13 108300496 108302273 + 0 NA Intergenic Intergenic 9366 ENSMUSG00000114607.1 ENSMUSG00000114607 ENSMUST00000225465 Gm8990 processed_pseudogene Interval_54063 chr14 64880140 64880450 + 0 NA intron (ENSMUSG00000021972.14, intron 3 of 9) protein_coding-intron (ENSMUSG00000021972.14, intron 4 of 10) 22971 ENSMUSG00000021972.14 ENSMUSG00000021972 ENSMUST00000176657 Hmbox1 protein_coding Interval_129946 chr5 123242650 123243001 + 0 NA intron (ENSMUSG00000029440.15, intron 1 of 1) protein_coding-intron (ENSMUSG00000029440.15, intron 4 of 5) 12988 ENSMUSG00000094664.1 ENSMUSG00000094664 ENSMUST00000148282 Rpl35a-ps6 processed_pseudogene Interval_48267 chr13 97551932 97552581 + 0 NA Intergenic Intergenic -7770 ENSMUSG00000110235.1 ENSMUSG00000110235 ENSMUST00000210897 Gm5086 lincRNA Interval_139754 chr6 108407945 108408797 + 0 NA intron (ENSMUSG00000030102.11, intron 35 of 61) protein_coding-intron (ENSMUSG00000030102.11, intron 35 of 61) 20937 ENSMUSG00000030102.11 ENSMUSG00000030102 ENSMUST00000205005 Itpr1 protein_coding Interval_77141 chr17 86823438 86823643 + 0 NA promoter-TSS (ENSMUSG00000024140.10) protein_coding-promoter-TSS (ENSMUSG00000024140.10) -793 ENSMUSG00000024140.10 ENSMUSG00000024140 ENSMUST00000234447 Epas1 protein_coding Interval_82130 chr18 67907391 67908076 + 0 NA exon (ENSMUSG00000118326.1, exon 1 of 1) processed_pseudogene-exon (ENSMUSG00000118326.1, exon 1 of 1) 105 ENSMUSG00000118326.1 ENSMUSG00000118326 ENSMUST00000235570 Gm8887 processed_pseudogene Interval_64721 chr16 14452927 14453255 + 0 NA intron (ENSMUSG00000023088.17, intron 19 of 30) protein_coding-intron (ENSMUSG00000023088.17, intron 19 of 30) 30655 ENSMUSG00000116439.1 ENSMUSG00000116439 ENSMUST00000231182 Gm49528 unprocessed_pseudogene Interval_106956 chr3 102174523 102176242 + 0 NA intron (ENSMUSG00000027860.15, intron 4 of 7) protein_coding-intron (ENSMUSG00000027860.15, intron 4 of 7) -28574 ENSMUSG00000089916.1 ENSMUSG00000089916 ENSMUST00000160105 Gm16160 antisense Interval_133056 chr5 149560850 149561697 + 0 NA intron (ENSMUSG00000029658.17, intron 4 of 19) protein_coding-intron (ENSMUSG00000029658.17, intron 4 of 22) -23243 ENSMUSG00000107132.1 ENSMUSG00000107132 ENSMUST00000202188 Gm15997 antisense Interval_104465 chr3 66000642 66000832 + 0 NA Intergenic Intergenic -10984 ENSMUSG00000103641.1 ENSMUSG00000103641 ENSMUST00000194681 Gm19024 processed_pseudogene Interval_110890 chr4 9596418 9596654 + 0 NA promoter-TSS (ENSMUSG00000028207.18) protein_coding-promoter-TSS (ENSMUSG00000028207.18) 47181 ENSMUSG00000028207.18 ENSMUSG00000028207 ENSMUST00000130617 Asph protein_coding Interval_41185 chr12 111677525 111679266 + 0 NA exon (ENSMUSG00000060950.12, exon 1 of 3) protein_coding-exon (ENSMUSG00000060950.12, exon 1 of 3) 279 ENSMUSG00000060950.12 ENSMUSG00000060950 ENSMUST00000222737 Trmt61a protein_coding Interval_82963 chr18 80035115 80035755 + 0 NA Intergenic Intergenic 6079 ENSMUSG00000117933.1 ENSMUSG00000117933 ENSMUST00000237994 Gm50193 processed_pseudogene Interval_154908 chr8 24988823 24989405 + 0 NA intron (ENSMUSG00000031555.15, intron 11 of 21) protein_coding-intron (ENSMUSG00000031555.15, intron 11 of 22) 8676 ENSMUSG00000031555.15 ENSMUSG00000031555 ENSMUST00000211319 Adam9 protein_coding Interval_69224 chr16 91484501 91485768 + 0 NA promoter-TSS (ENSMUSG00000022967.13) protein_coding-promoter-TSS (ENSMUSG00000022967.13) -182 ENSMUSG00000022967.13 ENSMUSG00000022967 ENSMUST00000232453 Ifnar1 protein_coding Interval_72309 chr17 29090879 29091236 + 0 NA promoter-TSS (ENSMUSG00000023067.14) protein_coding-promoter-TSS (ENSMUSG00000023067.14) -2724 ENSMUSG00000023067.14 ENSMUSG00000023067 ENSMUST00000122348 Cdkn1a protein_coding Interval_140994 chr6 124054218 124055603 + 0 NA intron (ENSMUSG00000096630.2, intron 6 of 6) protein_coding-intron (ENSMUSG00000096630.2, intron 5 of 5) 3704 ENSMUSG00000089307.1 ENSMUSG00000089307 ENSMUST00000158682 Gm24843 snoRNA Interval_8125 chr1 135847011 135847592 + 0 NA intron (ENSMUSG00000026414.13, intron 7 of 8) protein_coding-intron (ENSMUSG00000026414.13, intron 5 of 13) 10911 ENSMUSG00000026414.13 ENSMUSG00000026414 ENSMUST00000188098 Tnnt2 protein_coding Interval_97381 chr2 135646125 135648175 + 0 NA Intergenic Intergenic -1757 ENSMUSG00000084762.1 ENSMUSG00000084762 ENSMUST00000146980 Platr3 lincRNA Interval_36675 chr12 51949280 51949531 + 0 NA intron (ENSMUSG00000035181.6, intron 9 of 12) protein_coding-intron (ENSMUSG00000035181.6, intron 9 of 35) -9455 ENSMUSG00000035181.6 ENSMUSG00000035181 ENSMUST00000219277 Heatr5a protein_coding Interval_165494 chr9 48675015 48675237 + 0 NA intron (ENSMUSG00000066687.5, intron 4 of 6) protein_coding-intron (ENSMUSG00000066687.5, intron 4 of 6) -77751 ENSMUSG00000032271.13 ENSMUSG00000032271 ENSMUST00000128076 Nnmt protein_coding Interval_48666 chr13 100994501 100994903 + 0 NA Intergenic Intergenic 19284 ENSMUSG00000098005.1 ENSMUSG00000098005 ENSMUST00000182472 Gm6114 processed_pseudogene Interval_63665 chr15 102659885 102660163 + 0 NA TTS (ENSMUSG00000116056.1) lincRNA-TTS (ENSMUSG00000116056.1) 2456 ENSMUSG00000116056.1 ENSMUSG00000116056 ENSMUST00000229601 Gm4544 lincRNA Interval_16073 chr10 60539171 60539993 + 0 NA intron (ENSMUSG00000012819.15, intron 5 of 65) protein_coding-intron (ENSMUSG00000012819.15, intron 5 of 66) 139678 ENSMUSG00000090439.3 ENSMUSG00000090439 ENSMUST00000218360 Gm17455 protein_coding Interval_52459 chr14 46661381 46662570 + 0 NA intron (ENSMUSG00000115015.1, intron 1 of 3) lincRNA-intron (ENSMUSG00000115015.1, intron 1 of 3) -9750 ENSMUSG00000115421.1 ENSMUSG00000115421 ENSMUST00000227500 Gm48917 processed_transcript Interval_35256 chr12 19065858 19066589 + 0 NA Intergenic Intergenic 21517 ENSMUSG00000114188.1 ENSMUSG00000114188 ENSMUST00000222330 Gm40849 lincRNA Interval_89608 chr2 23207039 23207320 + 0 NA promoter-TSS (ENSMUSG00000026774.11) protein_coding-promoter-TSS (ENSMUSG00000026774.11) -318 ENSMUSG00000026774.11 ENSMUSG00000026774 ENSMUST00000114505 Potegl protein_coding Interval_25317 chr11 46275454 46275769 + 0 NA intron (ENSMUSG00000020340.16, intron 8 of 30) protein_coding-intron (ENSMUSG00000020340.16, intron 8 of 30) -31417 ENSMUSG00000081078.1 ENSMUSG00000081078 ENSMUST00000117362 Gm12568 processed_pseudogene Interval_111049 chr4 11504780 11506111 + 0 NA exon (ENSMUSG00000040720.15, exon 5 of 13) protein_coding-exon (ENSMUSG00000040720.15, exon 5 of 13) -2606 ENSMUSG00000086625.1 ENSMUSG00000086625 ENSMUST00000141538 Gm11831 antisense Interval_4788 chr1 78657323 78658739 + 0 NA promoter-TSS (ENSMUSG00000079470.8) protein_coding-promoter-TSS (ENSMUSG00000079470.8) -409 ENSMUSG00000079470.8 ENSMUSG00000079470 ENSMUST00000151622 Utp14b protein_coding Interval_67494 chr16 49893099 49893459 + 0 NA intron (ENSMUSG00000055447.19, intron 3 of 7) protein_coding-intron (ENSMUSG00000055447.19, intron 4 of 9) 37634 ENSMUSG00000055447.19 ENSMUSG00000055447 ENSMUST00000229104 Cd47 protein_coding Interval_58535 chr15 35911265 35911919 + 0 NA intron (ENSMUSG00000037646.10, intron 56 of 61) protein_coding-intron (ENSMUSG00000037646.10, intron 56 of 61) 25577 ENSMUSG00000014313.15 ENSMUSG00000014313 ENSMUST00000227231 Cox6c protein_coding Interval_54064 chr14 64926161 64926478 + 0 NA intron (ENSMUSG00000021972.14, intron 1 of 9) protein_coding-intron (ENSMUSG00000021972.14, intron 1 of 10) 4498 ENSMUSG00000114686.1 ENSMUSG00000114686 ENSMUST00000224989 Gm4573 processed_pseudogene Interval_99961 chr2 166125071 166126985 + 0 NA intron (ENSMUSG00000006800.14, intron 3 of 21) protein_coding-intron (ENSMUSG00000006800.14, intron 2 of 20) 29635 ENSMUSG00000006800.14 ENSMUSG00000006800 ENSMUST00000133395 Sulf2 protein_coding Interval_110377 chr3 157557825 157559288 + 0 NA Intergenic Intergenic -8344 ENSMUSG00000040016.16 ENSMUSG00000040016 ENSMUST00000173533 Ptger3 protein_coding Interval_72100 chr17 28035162 28035397 + 0 NA intron (ENSMUSG00000024219.16, intron 11 of 23) protein_coding-intron (ENSMUSG00000024219.16, intron 12 of 24) -5496 ENSMUSG00000024219.16 ENSMUSG00000024219 ENSMUST00000232769 Anks1 protein_coding Interval_87696 chr19 55134555 55134792 + 0 NA Intergenic Intergenic -7470 ENSMUSG00000024978.11 ENSMUSG00000024978 ENSMUST00000236422 Gpam protein_coding Interval_129617 chr5 121360374 121360621 + 0 NA intron (ENSMUSG00000042744.16, intron 69 of 75) protein_coding-intron (ENSMUSG00000042744.16, intron 69 of 75) 3653 ENSMUSG00000077347.1 ENSMUSG00000077347 ENSMUST00000104159 Gm24671 snRNA Interval_97896 chr2 145091674 145091870 + 0 NA Intergenic Intergenic -76147 ENSMUSG00000063873.10 ENSMUSG00000063873 ENSMUST00000131123 Slc24a3 protein_coding Interval_103951 chr3 55423979 55424212 + 0 NA intron (ENSMUSG00000027797.15, intron 2 of 4) protein_coding-intron (ENSMUSG00000027797.15, intron 4 of 16) -23071 ENSMUSG00000105975.4 ENSMUSG00000105975 ENSMUST00000196877 Gm42609 antisense Interval_149511 chr7 99248903 99251119 + 0 NA Intergenic Intergenic -1191 ENSMUSG00000109472.1 ENSMUSG00000109472 ENSMUST00000207357 Gm18943 processed_pseudogene Interval_116889 chr4 117997245 117998321 + 0 NA intron (ENSMUSG00000028538.12, intron 2 of 7) protein_coding-intron (ENSMUSG00000028538.12, intron 5 of 11) 22747 ENSMUSG00000086554.1 ENSMUSG00000086554 ENSMUST00000146982 9530034E10Rik antisense Interval_138138 chr6 85409186 85409459 + 0 NA Intergenic Intergenic -14746 ENSMUSG00000068302.8 ENSMUSG00000068302 ENSMUST00000174469 Noto protein_coding Interval_124590 chr5 52112937 52116587 + 0 NA Intergenic Intergenic -2550 ENSMUSG00000104847.1 ENSMUSG00000104847 ENSMUST00000197032 Gm43177 lincRNA Interval_79988 chr18 36514072 36514253 + 0 NA exon (ENSMUSG00000024486.6, exon 2 of 2) protein_coding-exon (ENSMUSG00000024486.6, exon 2 of 2) 1205 ENSMUSG00000024486.6 ENSMUSG00000024486 ENSMUST00000236520 Hbegf protein_coding Interval_52441 chr14 46412139 46413171 + 0 NA Intergenic Intergenic -24200 ENSMUSG00000086168.1 ENSMUSG00000086168 ENSMUST00000144439 Gm15221 lincRNA Interval_120393 chr4 148321530 148322178 + 0 NA Intergenic Intergenic 15001 ENSMUSG00000087027.2 ENSMUSG00000087027 ENSMUST00000129579 Gm13206 lincRNA Interval_39322 chr12 86701208 86701430 + 0 NA TTS (ENSMUSG00000021257.14) protein_coding-TTS (ENSMUSG00000021257.14) -13667 ENSMUSG00000091942.1 ENSMUSG00000091942 ENSMUST00000165702 Gm17138 processed_pseudogene Interval_108441 chr3 127225050 127226687 + 0 NA promoter-TSS (ENSMUSG00000032826.19) protein_coding-promoter-TSS (ENSMUSG00000032826.19) 17907 ENSMUSG00000105733.1 ENSMUSG00000105733 ENSMUST00000197913 Gm42973 TEC Interval_76992 chr17 85439201 85439456 + 0 NA intron (ENSMUSG00000071037.6, intron 8 of 10) protein_coding-intron (ENSMUSG00000071037.6, intron 8 of 10) -59305 ENSMUSG00000097803.1 ENSMUSG00000097803 ENSMUST00000181130 Rpl31-ps16 processed_pseudogene Interval_159313 chr8 93400706 93402105 + 0 NA intron (ENSMUSG00000110687.1, intron 1 of 1) antisense-intron (ENSMUSG00000110718.1, intron 1 of 1) 2500 ENSMUSG00000110687.1 ENSMUSG00000110687 ENSMUST00000213047 Gm45764 lincRNA Interval_165956 chr9 54946927 54947197 + 0 NA exon (ENSMUSG00000035878.13, exon 5 of 5) protein_coding-exon (ENSMUSG00000035878.13, exon 5 of 5) -3753 ENSMUSG00000032301.13 ENSMUSG00000032301 ENSMUST00000171900 Psma4 protein_coding Interval_164225 chr9 32933057 32934205 + 0 NA Intergenic Intergenic -4665 ENSMUSG00000099025.1 ENSMUSG00000099025 ENSMUST00000185169 Gm27162 lincRNA Interval_65927 chr16 30297151 30297672 + 0 NA Intergenic Intergenic 13368 ENSMUSG00000047953.7 ENSMUSG00000047953 ENSMUST00000061190 Gp5 protein_coding Interval_126065 chr5 77188903 77189124 + 0 NA Intergenic Intergenic 22192 ENSMUSG00000053030.11 ENSMUSG00000053030 ENSMUST00000121825 Spink2 protein_coding Interval_23827 chr11 26725355 26725656 + 0 NA Intergenic Intergenic 12600 ENSMUSG00000082038.1 ENSMUSG00000082038 ENSMUST00000121968 Gm12071 processed_pseudogene Interval_72425 chr17 29737992 29738183 + 0 NA Intergenic Intergenic 21015 ENSMUSG00000117434.1 ENSMUSG00000117434 ENSMUST00000234637 1810014P07Rik bidirectional_promoter_lncRNA Interval_109800 chr3 147297366 147298913 + 0 NA Intergenic Intergenic -91573 ENSMUSG00000106023.1 ENSMUSG00000106023 ENSMUST00000196485 Gm36831 lincRNA Interval_61536 chr15 82224059 82224941 + 0 NA promoter-TSS (ENSMUSG00000068105.11) protein_coding-promoter-TSS (ENSMUSG00000068105.11) -131 ENSMUSG00000068105.11 ENSMUSG00000068105 ENSMUST00000229984 Tnfrsf13c protein_coding Interval_77658 chr17 93666176 93666459 + 0 NA Intergenic Intergenic 14348 ENSMUSG00000117514.1 ENSMUSG00000117514 ENSMUST00000234106 Gm50002 processed_pseudogene Interval_97218 chr2 132305783 132306877 + 0 NA exon (ENSMUSG00000058793.14, exon 13 of 13) protein_coding-exon (ENSMUSG00000058793.14, exon 13 of 13) 43089 ENSMUSG00000058793.14 ENSMUSG00000058793 ENSMUST00000138194 Cds2 protein_coding Interval_28752 chr11 78086664 78087452 + 0 NA Intergenic Intergenic -6675 ENSMUSG00000020832.14 ENSMUSG00000020832 ENSMUST00000135154 Eral1 protein_coding Interval_57189 chr15 7253637 7253925 + 0 NA intron (ENSMUSG00000042961.13, intron 2 of 2) protein_coding-intron (ENSMUSG00000042961.13, intron 7 of 21) 987 ENSMUSG00000042961.13 ENSMUSG00000042961 ENSMUST00000159726 Egflam protein_coding Interval_160721 chr8 111804277 111805042 + 0 NA intron (ENSMUSG00000031954.6, intron 5 of 6) protein_coding-intron (ENSMUSG00000031954.6, intron 5 of 6) 49632 ENSMUSG00000031954.6 ENSMUSG00000031954 ENSMUST00000034432 Cfdp1 protein_coding Interval_18531 chr10 87024280 87025357 + 0 NA intron (ENSMUSG00000089656.1, intron 2 of 2) antisense-intron (ENSMUSG00000089656.1, intron 2 of 2) 24521 ENSMUSG00000089666.1 ENSMUSG00000089666 ENSMUST00000160532 Gm16269 processed_pseudogene Interval_149733 chr7 101006930 101007258 + 0 NA intron (ENSMUSG00000032860.5, intron 1 of 2) protein_coding-intron (ENSMUSG00000032860.5, intron 1 of 2) -3207 ENSMUSG00000032860.5 ENSMUSG00000032860 ENSMUST00000208258 P2ry2 protein_coding Interval_6491 chr1 112220014 112220846 + 0 NA Intergenic Intergenic 69341 ENSMUSG00000100020.1 ENSMUSG00000100020 ENSMUST00000190772 Gm19086 processed_pseudogene Interval_72250 chr17 28810506 28811135 + 0 NA intron (ENSMUSG00000063952.16, intron 3 of 10) protein_coding-intron (ENSMUSG00000063952.16, intron 3 of 12) -9197 ENSMUSG00000117255.1 ENSMUSG00000117255 ENSMUST00000233925 Gm49864 bidirectional_promoter_lncRNA Interval_83747 chr19 4373324 4373521 + 0 NA intron (ENSMUSG00000054611.17, intron 2 of 9) protein_coding-intron (ENSMUSG00000054611.17, intron 2 of 20) -45011 ENSMUSG00000054611.17 ENSMUSG00000054611 ENSMUST00000176495 Kdm2a protein_coding Interval_163152 chr9 15873661 15874954 + 0 NA exon (ENSMUSG00000050901.6, exon 1 of 2) protein_coding-exon (ENSMUSG00000050901.6, exon 1 of 2) 249 ENSMUSG00000050901.6 ENSMUSG00000050901 ENSMUST00000057920 Mtnr1b protein_coding Interval_28806 chr11 78435526 78436488 + 0 NA Intergenic Intergenic -8100 ENSMUSG00000086380.1 ENSMUSG00000086380 ENSMUST00000135030 Gm11195 lincRNA Interval_21564 chr10 129995512 129995831 + 0 NA Intergenic Intergenic -7341 ENSMUSG00000107423.1 ENSMUSG00000107423 ENSMUST00000203970 Gm43977 unprocessed_pseudogene Interval_139238 chr6 97442016 97442233 + 0 NA intron (ENSMUSG00000030064.16, intron 2 of 7) protein_coding-intron (ENSMUSG00000030064.16, intron 1 of 22) -7626 ENSMUSG00000108185.1 ENSMUSG00000108185 ENSMUST00000204326 Gm19653 processed_pseudogene Interval_128504 chr5 113693157 113693993 + 0 NA intron (ENSMUSG00000042184.11, intron 2 of 2) protein_coding-intron (ENSMUSG00000042184.11, intron 2 of 2) 31197 ENSMUSG00000042184.11 ENSMUSG00000042184 ENSMUST00000047891 1700069L16Rik protein_coding Interval_115254 chr4 94899791 94900583 + 0 NA Intergenic Intergenic 28656 ENSMUSG00000028575.11 ENSMUSG00000028575 ENSMUST00000030309 Eqtn protein_coding Interval_98683 chr2 154290297 154290496 + 0 NA Intergenic Intergenic -5135 ENSMUSG00000083732.1 ENSMUSG00000083732 ENSMUST00000117480 Gm14197 processed_pseudogene Interval_77837 chr18 4336487 4336789 + 0 NA promoter-TSS (ENSMUSG00000024235.11) protein_coding-promoter-TSS (ENSMUSG00000024235.11) 16319 ENSMUSG00000024235.11 ENSMUSG00000024235 ENSMUST00000172805 Map3k8 protein_coding Interval_18425 chr10 85745435 85746270 + 0 NA promoter-TSS (ENSMUSG00000112568.1) processed_pseudogene-promoter-TSS (ENSMUSG00000112568.1) 99 ENSMUSG00000112568.1 ENSMUSG00000112568 ENSMUST00000218975 Gm47363 processed_pseudogene Interval_161628 chr8 121665297 121665989 + 0 NA TTS (ENSMUSG00000064642.1) snoRNA-TTS (ENSMUSG00000064642.1) 1063 ENSMUSG00000064642.1 ENSMUSG00000064642 ENSMUST00000082708 Gm23299 snoRNA Interval_104131 chr3 58887950 58888938 + 0 NA Intergenic Intergenic -22647 ENSMUSG00000043850.15 ENSMUSG00000043850 ENSMUST00000161419 Clrn1 protein_coding Interval_79764 chr18 34995568 34996054 + 0 NA intron (ENSMUSG00000118380.1, intron 2 of 5) processed_transcript-intron (ENSMUSG00000118380.1, intron 2 of 5) 12841 ENSMUSG00000118380.1 ENSMUSG00000118380 ENSMUST00000238090 Gm36037 processed_transcript Interval_103471 chr3 41982994 41983657 + 0 NA Intergenic Intergenic -5277 ENSMUSG00000103823.1 ENSMUSG00000103823 ENSMUST00000192935 Gm7899 processed_pseudogene Interval_25865 chr11 52240682 52241146 + 0 NA intron (ENSMUSG00000036309.14, intron 2 of 6) protein_coding-intron (ENSMUSG00000036309.14, intron 2 of 5) 7190 ENSMUSG00000086920.1 ENSMUSG00000086920 ENSMUST00000143016 Gm12207 antisense Interval_103462 chr3 41769461 41771039 + 0 NA intron (ENSMUSG00000025766.14, intron 5 of 7) protein_coding-intron (ENSMUSG00000025766.14, intron 5 of 7) -2931 ENSMUSG00000103952.1 ENSMUSG00000103952 ENSMUST00000192254 Gm37268 TEC Interval_24778 chr11 37382428 37382745 + 0 NA Intergenic Intergenic -276403 ENSMUSG00000087388.1 ENSMUSG00000087388 ENSMUST00000131013 Gm12128 lincRNA Interval_33347 chr11 116056107 116056689 + 0 NA TTS (ENSMUSG00000020770.13) protein_coding-TTS (ENSMUSG00000020770.13) 21192 ENSMUSG00000057948.12 ENSMUSG00000057948 ENSMUST00000156545 Unc13d protein_coding Interval_114375 chr4 74396712 74397247 + 0 NA intron (ENSMUSG00000028397.13, intron 20 of 21) protein_coding-intron (ENSMUSG00000028397.13, intron 20 of 21) 134170 ENSMUSG00000028397.13 ENSMUSG00000028397 ENSMUST00000150439 Kdm4c protein_coding Interval_119051 chr4 135236721 135237800 + 0 NA intron (ENSMUSG00000037242.8, intron 2 of 2) protein_coding-intron (ENSMUSG00000037242.8, intron 2 of 5) 35554 ENSMUSG00000037242.8 ENSMUSG00000037242 ENSMUST00000143370 Clic4 protein_coding Interval_140239 chr6 115739194 115739403 + 0 NA intron (ENSMUSG00000059900.14, intron 3 of 11) protein_coding-intron (ENSMUSG00000059900.14, intron 3 of 11) 11317 ENSMUSG00000098477.1 ENSMUSG00000098477 ENSMUST00000184176 Gm27853 misc_RNA Interval_111458 chr4 21781184 21781647 + 0 NA promoter-TSS (ENSMUSG00000040455.17) protein_coding-promoter-TSS (ENSMUSG00000040455.17) -14203 ENSMUSG00000028251.5 ENSMUSG00000028251 ENSMUST00000029915 Tstd3 protein_coding Interval_56257 chr14 115108606 115108793 + 0 NA intron (ENSMUSG00000022112.14, intron 1 of 1) protein_coding-intron (ENSMUSG00000022112.14, intron 1 of 7) 16484 ENSMUSG00000022112.14 ENSMUSG00000022112 ENSMUST00000022707 Gpc5 protein_coding Interval_32001 chr11 104382037 104382204 + 0 NA intron (ENSMUSG00000018412.16, intron 2 of 13) protein_coding-intron (ENSMUSG00000018412.16, intron 3 of 14) 43180 ENSMUSG00000106014.1 ENSMUSG00000106014 ENSMUST00000195891 Gm47315 miRNA Interval_31852 chr11 103355973 103356421 + 0 NA intron (ENSMUSG00000085360.1, intron 1 of 1) protein_coding-intron (ENSMUSG00000034255.17, intron 1 of 1) 496 ENSMUSG00000085360.1 ENSMUSG00000085360 ENSMUST00000123812 Arhgap27os2 antisense Interval_51316 chr14 26357267 26357934 + 0 NA promoter-TSS (ENSMUSG00000021874.12) lincRNA-promoter-TSS (ENSMUSG00000021874.12) -6788 ENSMUSG00000021874.12 ENSMUSG00000021874 ENSMUST00000168234 4933413J09Rik lincRNA Interval_133496 chr6 5812247 5812897 + 0 NA intron (ENSMUSG00000029757.16, intron 6 of 16) protein_coding-intron (ENSMUSG00000029757.16, intron 5 of 15) 55153 ENSMUSG00000029757.16 ENSMUSG00000029757 ENSMUST00000203520 Dync1i1 protein_coding Interval_85080 chr19 22323395 22323591 + 0 NA intron (ENSMUSG00000052387.16, intron 1 of 24) protein_coding-intron (ENSMUSG00000052387.16, intron 1 of 24) -87875 ENSMUSG00000088558.1 ENSMUSG00000088558 ENSMUST00000157933 Gm22506 snoRNA Interval_26838 chr11 60966875 60967246 + 0 NA Intergenic Intergenic 35006 ENSMUSG00000018932.9 ENSMUSG00000018932 ENSMUST00000137609 Map2k3 protein_coding Interval_85389 chr19 25430222 25431129 + 0 NA intron (ENSMUSG00000032702.16, intron 11 of 13) protein_coding-intron (ENSMUSG00000032702.16, intron 11 of 13) 8436 ENSMUSG00000032702.16 ENSMUSG00000032702 ENSMUST00000155788 Kank1 protein_coding Interval_51270 chr14 25651527 25652093 + 0 NA intron (ENSMUSG00000007817.15, intron 14 of 23) protein_coding-intron (ENSMUSG00000007817.15, intron 14 of 23) -42384 ENSMUSG00000021868.7 ENSMUSG00000021868 ENSMUST00000223872 Ppif protein_coding Interval_123979 chr5 36988451 36989702 + 0 NA promoter-TSS (ENSMUSG00000039474.13) protein_coding-promoter-TSS (ENSMUSG00000039474.13) -12120 ENSMUSG00000039474.13 ENSMUSG00000039474 ENSMUST00000167937 Wfs1 protein_coding Interval_53205 chr14 55105916 55106993 + 0 NA promoter-TSS (ENSMUSG00000040701.16) protein_coding-promoter-TSS (ENSMUSG00000040701.16) -307 ENSMUSG00000040701.16 ENSMUSG00000040701 ENSMUST00000144197 Ap1g2 protein_coding Interval_92026 chr2 52675011 52676807 + 0 NA intron (ENSMUSG00000017412.15, intron 1 of 13) protein_coding-intron (ENSMUSG00000017412.15, intron 1 of 13) 673 ENSMUSG00000017412.15 ENSMUSG00000017412 ENSMUST00000148837 Cacnb4 protein_coding Interval_10905 chr1 176850572 176851012 + 0 NA intron (ENSMUSG00000026504.17, intron 8 of 16) protein_coding-intron (ENSMUSG00000026504.17, intron 8 of 17) 3767 ENSMUSG00000103584.1 ENSMUSG00000103584 ENSMUST00000193938 Gm38053 unprocessed_pseudogene Interval_42977 chr13 22026256 22026867 + 0 NA promoter-TSS (ENSMUSG00000043145.7) processed_transcript-promoter-TSS (ENSMUSG00000043145.7) -138 ENSMUSG00000043145.7 ENSMUSG00000043145 ENSMUST00000146121 Gm11292 processed_transcript Interval_15503 chr10 49902928 49903481 + 0 NA Intergenic Intergenic 52777 ENSMUSG00000110973.1 ENSMUSG00000110973 ENSMUST00000213795 Gm48130 processed_pseudogene Interval_66756 chr16 37065884 37066252 + 0 NA intron (ENSMUSG00000034206.15, intron 13 of 25) protein_coding-intron (ENSMUSG00000034206.15, intron 17 of 29) 54282 ENSMUSG00000034206.15 ENSMUSG00000034206 ENSMUST00000182717 Polq protein_coding Interval_109537 chr3 144204630 144206087 + 0 NA promoter-TSS (ENSMUSG00000028266.17) protein_coding-promoter-TSS (ENSMUSG00000028266.17) -2395 ENSMUSG00000028266.17 ENSMUSG00000028266 ENSMUST00000124891 Lmo4 protein_coding Interval_131004 chr5 134501626 134502951 + 0 NA intron (ENSMUSG00000063146.11, intron 10 of 16) protein_coding-intron (ENSMUSG00000063146.11, intron 9 of 15) 13990 ENSMUSG00000063146.11 ENSMUSG00000063146 ENSMUST00000202408 Clip2 protein_coding Interval_87060 chr19 45855363 45855581 + 0 NA intron (ENSMUSG00000039901.10, intron 23 of 25) protein_coding-intron (ENSMUSG00000039901.10, intron 23 of 25) 11855 ENSMUSG00000117956.1 ENSMUSG00000117956 ENSMUST00000235344 Gm50196 antisense Interval_125627 chr5 72875578 72876540 + 0 NA Intergenic Intergenic -31610 ENSMUSG00000029217.16 ENSMUSG00000029217 ENSMUST00000202547 Tec protein_coding Interval_41031 chr12 110701622 110704035 + 0 NA promoter-TSS (ENSMUSG00000021270.13) protein_coding-promoter-TSS (ENSMUSG00000021270.13) -100 ENSMUSG00000021270.13 ENSMUSG00000021270 ENSMUST00000149189 Hsp90aa1 protein_coding Interval_163167 chr9 16452745 16452985 + 0 NA intron (ENSMUSG00000074505.6, intron 1 of 25) protein_coding-intron (ENSMUSG00000074505.6, intron 1 of 25) -17470 ENSMUSG00000111652.1 ENSMUSG00000111652 ENSMUST00000215220 Gm48726 TEC Interval_54158 chr14 65805789 65807288 + 0 NA intron (ENSMUSG00000022033.9, intron 1 of 4) protein_coding-intron (ENSMUSG00000022033.9, intron 1 of 7) 601 ENSMUSG00000022033.9 ENSMUSG00000022033 ENSMUST00000139644 Pbk protein_coding Interval_102410 chr3 24968326 24969397 + 0 NA intron (ENSMUSG00000102758.3, intron 1 of 2) protein_coding-intron (ENSMUSG00000102758.3, intron 1 of 2) 38844 ENSMUSG00000105009.1 ENSMUSG00000105009 ENSMUST00000198854 Gm42774 processed_pseudogene Interval_173102 chrX 71670127 71670683 + 0 NA Intergenic Intergenic 6439 ENSMUSG00000056380.13 ENSMUSG00000056380 ENSMUST00000131554 Gpr50 protein_coding Interval_62421 chr15 92347311 92348642 + 0 NA intron (ENSMUSG00000097068.2, intron 1 of 3) lincRNA-intron (ENSMUSG00000097068.2, intron 1 of 3) 3617 ENSMUSG00000097068.2 ENSMUSG00000097068 ENSMUST00000181901 Gm26760 lincRNA Interval_142414 chr6 141775558 141777142 + 0 NA Intergenic Intergenic -2540 ENSMUSG00000084927.1 ENSMUSG00000084927 ENSMUST00000148411 Gm5724 protein_coding Interval_63457 chr15 101200983 101201365 + 0 NA intron (ENSMUSG00000000532.11, intron 4 of 8) protein_coding-intron (ENSMUSG00000000532.11, intron 4 of 8) 7305 ENSMUSG00000106563.1 ENSMUSG00000106563 ENSMUST00000199512 Mir6962 miRNA Interval_4349 chr1 72865778 72866058 + 0 NA intron (ENSMUSG00000026185.8, intron 1 of 5) protein_coding-intron (ENSMUSG00000026185.8, intron 1 of 3) 8357 ENSMUSG00000026185.8 ENSMUSG00000026185 ENSMUST00000137339 Igfbp5 protein_coding Interval_4639 chr1 75601395 75602314 + 0 NA Intergenic Intergenic -22800 ENSMUSG00000082528.1 ENSMUSG00000082528 ENSMUST00000120832 Gm15182 processed_pseudogene Interval_103228 chr3 37218819 37219527 + 0 NA Intergenic Intergenic -12160 ENSMUSG00000086517.1 ENSMUSG00000086517 ENSMUST00000147691 Gm12534 antisense Interval_144530 chr7 25725926 25726141 + 0 NA exon (ENSMUSG00000040725.13, exon 12 of 15) protein_coding-exon (ENSMUSG00000040725.13, exon 12 of 15) -7042 ENSMUSG00000002608.8 ENSMUSG00000002608 ENSMUST00000140847 Ccdc97 protein_coding Interval_100065 chr2 166888865 166889122 + 0 NA intron (ENSMUSG00000074582.10, intron 35 of 38) protein_coding-intron (ENSMUSG00000074582.10, intron 35 of 38) -17047 ENSMUSG00000002718.14 ENSMUSG00000002718 ENSMUST00000129061 Cse1l protein_coding Interval_115933 chr4 106378768 106379668 + 0 NA intron (ENSMUSG00000028514.15, intron 27 of 67) protein_coding-intron (ENSMUSG00000028514.15, intron 27 of 67) 63005 ENSMUSG00000028514.15 ENSMUSG00000028514 ENSMUST00000150521 Usp24 protein_coding Interval_46033 chr13 60440537 60440930 + 0 NA Intergenic Intergenic -6002 ENSMUSG00000114274.1 ENSMUSG00000114274 ENSMUST00000225281 Gm35333 lincRNA Interval_118048 chr4 128609506 128610539 + 0 NA promoter-TSS (ENSMUSG00000061894.15) protein_coding-promoter-TSS (ENSMUSG00000061894.15) 12 ENSMUSG00000061894.15 ENSMUSG00000061894 ENSMUST00000141040 Zscan20 protein_coding Interval_57350 chr15 9365558 9366227 + 0 NA intron (ENSMUSG00000049152.11, intron 5 of 6) protein_coding-intron (ENSMUSG00000049152.11, intron 5 of 6) 30303 ENSMUSG00000049152.11 ENSMUSG00000049152 ENSMUST00000144755 Ugt3a2 protein_coding Interval_99296 chr2 158745138 158745642 + 0 NA intron (ENSMUSG00000037754.13, intron 2 of 8) protein_coding-intron (ENSMUSG00000037754.13, intron 3 of 10) 5252 ENSMUSG00000093040.1 ENSMUSG00000093040 ENSMUST00000175299 Gm26141 miRNA Interval_90416 chr2 30322237 30322634 + 0 NA exon (ENSMUSG00000084892.1, exon 1 of 2) processed_transcript-exon (ENSMUSG00000084892.1, exon 1 of 2) 1551 ENSMUSG00000084892.1 ENSMUSG00000084892 ENSMUST00000141035 Gm14471 processed_transcript Interval_129124 chr5 117546802 117547070 + 0 NA intron (ENSMUSG00000061578.8, intron 3 of 20) protein_coding-intron (ENSMUSG00000061578.8, intron 3 of 3) 26237 ENSMUSG00000107199.1 ENSMUSG00000107199 ENSMUST00000201553 Gm42550 TEC Interval_58921 chr15 40036334 40036566 + 0 NA Intergenic Intergenic 6684 ENSMUSG00000115712.1 ENSMUSG00000115712 ENSMUST00000226568 Gm49255 processed_pseudogene Interval_101630 chr3 8206836 8207433 + 0 NA Intergenic Intergenic -7198 ENSMUSG00000103725.1 ENSMUSG00000103725 ENSMUST00000195642 Gm7103 processed_pseudogene Interval_154789 chr8 23383802 23385404 + 0 NA Intergenic Intergenic -26899 ENSMUSG00000031548.7 ENSMUSG00000031548 ENSMUST00000033952 Sfrp1 protein_coding Interval_160087 chr8 106293135 106293490 + 0 NA intron (ENSMUSG00000031906.9, intron 1 of 8) protein_coding-intron (ENSMUSG00000031906.9, intron 1 of 8) 10005 ENSMUSG00000074113.4 ENSMUSG00000074113 ENSMUST00000137706 Gm10629 lincRNA Interval_44388 chr13 44558160 44560426 + 0 NA intron (ENSMUSG00000113977.1, intron 1 of 3) lincRNA-intron (ENSMUSG00000113977.1, intron 1 of 3) 9375 ENSMUSG00000113977.1 ENSMUSG00000113977 ENSMUST00000222558 Gm34276 lincRNA Interval_150768 chr7 114243479 114243699 + 0 NA intron (ENSMUSG00000030754.9, intron 6 of 21) protein_coding-intron (ENSMUSG00000030754.9, intron 6 of 21) 11102 ENSMUSG00000030754.9 ENSMUSG00000030754 ENSMUST00000211417 Copb1 protein_coding Interval_137894 chr6 83179258 83179984 + 0 NA promoter-TSS (ENSMUSG00000031865.16) protein_coding-promoter-TSS (ENSMUSG00000031865.16) -6866 ENSMUSG00000085782.2 ENSMUSG00000085782 ENSMUST00000145420 Gm15624 antisense Interval_142364 chr6 140995461 140995678 + 0 NA intron (ENSMUSG00000107638.2, intron 2 of 3) lincRNA-intron (ENSMUSG00000107638.2, intron 2 of 3) 12716 ENSMUSG00000107613.1 ENSMUSG00000107613 ENSMUST00000204599 Gm43927 processed_pseudogene Interval_109437 chr3 142374971 142375508 + 0 NA intron (ENSMUSG00000028273.15, intron 1 of 12) protein_coding-intron (ENSMUSG00000028273.15, intron 2 of 12) -71260 ENSMUSG00000028273.15 ENSMUSG00000028273 ENSMUST00000058626 Pdlim5 protein_coding Interval_134964 chr6 34176026 34177235 + 0 NA intron (ENSMUSG00000018999.14, intron 1 of 8) protein_coding-intron (ENSMUSG00000018999.14, intron 1 of 9) -2602 ENSMUSG00000087613.1 ENSMUSG00000087613 ENSMUST00000145644 Gm13855 lincRNA Interval_57582 chr15 12577086 12578827 + 0 NA intron (ENSMUSG00000022197.16, intron 3 of 4) protein_coding-intron (ENSMUSG00000022197.16, intron 1 of 23) 3067 ENSMUSG00000078300.3 ENSMUSG00000078300 ENSMUST00000100754 Gm2606 processed_pseudogene Interval_169326 chr9 96423698 96424872 + 0 NA Intergenic Intergenic 13853 ENSMUSG00000056418.3 ENSMUSG00000056418 ENSMUST00000070500 BC043934 lincRNA Interval_127602 chr5 105716902 105717621 + 0 NA intron (ENSMUSG00000046079.16, intron 1 of 1) protein_coding-intron (ENSMUSG00000046079.16, intron 1 of 2) -14128 ENSMUSG00000046079.16 ENSMUSG00000046079 ENSMUST00000134605 Lrrc8d protein_coding Interval_73955 chr17 45655378 45656660 + 0 NA intron (ENSMUSG00000058626.16, intron 1 of 21) protein_coding-intron (ENSMUSG00000058626.16, intron 1 of 21) 3278 ENSMUSG00000058626.16 ENSMUSG00000058626 ENSMUST00000151350 Capn11 protein_coding Interval_92312 chr2 58604309 58605595 + 0 NA intron (ENSMUSG00000026839.17, intron 1 of 3) protein_coding-intron (ENSMUSG00000026839.17, intron 1 of 7) -28129 ENSMUSG00000026839.17 ENSMUSG00000026839 ENSMUST00000128864 Upp2 protein_coding Interval_138946 chr6 93708152 93708458 + 0 NA intron (ENSMUSG00000045095.16, intron 13 of 24) protein_coding-intron (ENSMUSG00000045095.16, intron 12 of 21) -58080 ENSMUSG00000107739.1 ENSMUSG00000107739 ENSMUST00000203479 Gm7812 processed_pseudogene Interval_121391 chr4 155481054 155482920 + 0 NA Intergenic Intergenic -10282 ENSMUSG00000118647.1 ENSMUSG00000118647 ENSMUST00000239493 AL670227.1 unitary_pseudogene Interval_150560 chr7 112450186 112451893 + 0 NA intron (ENSMUSG00000030770.15, intron 2 of 13) protein_coding-intron (ENSMUSG00000030770.15, intron 1 of 12) 23134 ENSMUSG00000030770.15 ENSMUSG00000030770 ENSMUST00000126047 Parva protein_coding Interval_18368 chr10 85324559 85324927 + 0 NA Intergenic Intergenic -9158 ENSMUSG00000087895.1 ENSMUSG00000087895 ENSMUST00000157270 Gm25281 miRNA Interval_3901 chr1 64642730 64643174 + 0 NA Intergenic Intergenic -6983 ENSMUSG00000100437.1 ENSMUSG00000100437 ENSMUST00000189284 Gm29152 lincRNA Interval_55430 chr14 87146540 87147427 + 0 NA Intergenic Intergenic -5748 ENSMUSG00000022021.14 ENSMUSG00000022021 ENSMUST00000226134 Diaph3 protein_coding Interval_41168 chr12 111596267 111596617 + 0 NA intron (ENSMUSG00000007411.16, intron 2 of 15) protein_coding-intron (ENSMUSG00000007411.16, intron 2 of 15) -8069 ENSMUSG00000007411.16 ENSMUSG00000007411 ENSMUST00000221841 Mark3 protein_coding Interval_46934 chr13 73535774 73537154 + 0 NA promoter-TSS (ENSMUSG00000021609.6) protein_coding-promoter-TSS (ENSMUSG00000021609.6) -283 ENSMUSG00000021609.6 ENSMUSG00000021609 ENSMUST00000022100 Slc6a3 protein_coding Interval_158681 chr8 85115488 85115680 + 0 NA intron (ENSMUSG00000074194.4, intron 2 of 4) protein_coding-intron (ENSMUSG00000074194.4, intron 1 of 3) -3516 ENSMUSG00000089213.1 ENSMUSG00000089213 ENSMUST00000158588 Gm23388 miRNA Interval_73793 chr17 43700712 43701655 + 0 NA intron (ENSMUSG00000023963.10, intron 6 of 10) protein_coding-intron (ENSMUSG00000023963.10, intron 6 of 11) 2820 ENSMUSG00000084474.1 ENSMUSG00000084474 ENSMUST00000122525 Gm25783 snRNA Interval_12607 chr10 3872375 3874053 + 0 NA exon (ENSMUSG00000040624.18, exon 2 of 16) protein_coding-exon (ENSMUSG00000040624.18, exon 2 of 16) -3607 ENSMUSG00000082123.1 ENSMUSG00000082123 ENSMUST00000117631 Gm16149 processed_pseudogene Interval_17118 chr10 71430888 71431454 + 0 NA intron (ENSMUSG00000060733.13, intron 1 of 1) protein_coding-intron (ENSMUSG00000060733.13, intron 2 of 2) -51910 ENSMUSG00000112608.1 ENSMUSG00000112608 ENSMUST00000217831 Gm46233 processed_pseudogene Interval_75580 chr17 68695022 68695380 + 0 NA intron (ENSMUSG00000041565.17, intron 17 of 19) protein_coding-intron (ENSMUSG00000041565.17, intron 17 of 19) -3710 ENSMUSG00000117274.1 ENSMUSG00000117274 ENSMUST00000233538 Gm17921 processed_pseudogene Interval_958 chr1 13467233 13467640 + 0 NA Intergenic Intergenic -59781 ENSMUSG00000101171.1 ENSMUSG00000101171 ENSMUST00000187246 Gm7593 processed_pseudogene Interval_136285 chr6 52525872 52527026 + 0 NA Intergenic Intergenic 16560 ENSMUSG00000108062.1 ENSMUSG00000108062 ENSMUST00000205205 Gm44028 lincRNA Interval_29556 chr11 84889156 84889389 + 0 NA intron (ENSMUSG00000020527.14, intron 5 of 21) protein_coding-intron (ENSMUSG00000020527.14, intron 5 of 5) -3815 ENSMUSG00000092644.1 ENSMUSG00000092644 ENSMUST00000174903 Gm23564 miRNA Interval_35259 chr12 19125901 19126103 + 0 NA Intergenic Intergenic 29682 ENSMUSG00000113992.1 ENSMUSG00000113992 ENSMUST00000222116 Gm9158 unprocessed_pseudogene Interval_62169 chr15 88489680 88490835 + 0 NA Intergenic Intergenic -110045 ENSMUSG00000054117.8 ENSMUSG00000054117 ENSMUST00000066949 Zdhhc25 protein_coding Interval_42244 chr13 10783691 10784043 + 0 NA intron (ENSMUSG00000097009.2, intron 1 of 2) lincRNA-intron (ENSMUSG00000114134.1, intron 1 of 1) 83706 ENSMUSG00000114134.1 ENSMUSG00000114134 ENSMUST00000221855 Gm47408 lincRNA Interval_118710 chr4 133309919 133310384 + 0 NA intron (ENSMUSG00000037622.14, intron 5 of 5) protein_coding-intron (ENSMUSG00000037622.14, intron 5 of 15) 12079 ENSMUSG00000037622.14 ENSMUSG00000037622 ENSMUST00000140976 Wdtc1 protein_coding Interval_61270 chr15 80390975 80392056 + 0 NA TTS (ENSMUSG00000022416.15) protein_coding-TTS (ENSMUSG00000022416.15) 2187 ENSMUSG00000022416.15 ENSMUSG00000022416 ENSMUST00000160175 Cacna1i protein_coding Interval_113935 chr4 59991436 59992873 + 0 NA intron (ENSMUSG00000078689.8, intron 1 of 6) protein_coding-intron (ENSMUSG00000078689.8, intron 1 of 6) 27860 ENSMUSG00000078689.8 ENSMUSG00000078689 ENSMUST00000107520 Mup6 protein_coding Interval_2743 chr1 44080889 44081931 + 0 NA Intergenic Intergenic -1664 ENSMUSG00000091844.2 ENSMUSG00000091844 ENSMUST00000168641 Gm8251 protein_coding Interval_135771 chr6 47190057 47190719 + 0 NA intron (ENSMUSG00000039419.17, intron 20 of 23) protein_coding-intron (ENSMUSG00000039419.17, intron 20 of 23) 145232 ENSMUSG00000107952.1 ENSMUSG00000107952 ENSMUST00000203583 Gm6352 processed_pseudogene Interval_111346 chr4 19527555 19527811 + 0 NA intron (ENSMUSG00000028228.5, intron 13 of 15) protein_coding-intron (ENSMUSG00000028228.5, intron 13 of 15) -12904 ENSMUSG00000089090.1 ENSMUSG00000089090 ENSMUST00000158465 Gm25655 misc_RNA Interval_169209 chr9 95520616 95523583 + 0 NA Intergenic Intergenic 9948 ENSMUSG00000101037.1 ENSMUSG00000101037 ENSMUST00000187393 Gm28424 antisense Interval_143462 chr7 6993091 6994324 + 0 NA Intergenic Intergenic -1678 ENSMUSG00000070837.5 ENSMUSG00000070837 ENSMUST00000207660 Aurkc protein_coding Interval_34671 chr12 8520898 8522185 + 0 NA intron (ENSMUSG00000112276.1, intron 2 of 2) antisense-intron (ENSMUSG00000112276.1, intron 2 of 2) 10340 ENSMUSG00000112276.1 ENSMUSG00000112276 ENSMUST00000218759 5033421B08Rik antisense Interval_34557 chr12 5091675 5091962 + 0 NA intron (ENSMUSG00000020627.10, intron 7 of 11) protein_coding-intron (ENSMUSG00000020627.10, intron 8 of 13) -24370 ENSMUSG00000112723.1 ENSMUSG00000112723 ENSMUST00000219035 Gm9110 processed_pseudogene Interval_55044 chr14 77475817 77476005 + 0 NA intron (ENSMUSG00000022012.9, intron 4 of 6) protein_coding-intron (ENSMUSG00000022012.9, intron 5 of 18) 25529 ENSMUSG00000067973.11 ENSMUSG00000067973 ENSMUST00000163416 Gm6994 antisense Interval_1670 chr1 30920555 30921373 + 0 NA Intergenic Intergenic 28345 ENSMUSG00000026064.16 ENSMUSG00000026064 ENSMUST00000130934 Ptp4a1 protein_coding Interval_18733 chr10 89765713 89765915 + 0 NA intron (ENSMUSG00000019951.10, intron 2 of 6) protein_coding-intron (ENSMUSG00000019951.10, intron 1 of 20) 20576 ENSMUSG00000019951.10 ENSMUSG00000019951 ENSMUST00000219819 Uhrf1bp1l protein_coding Interval_130912 chr5 134001364 134001798 + 0 NA Intergenic Intergenic -81579 ENSMUSG00000104893.1 ENSMUSG00000104893 ENSMUST00000196197 Gm2404 processed_pseudogene Interval_52363 chr14 45422140 45422531 + 0 NA exon (ENSMUSG00000053205.9, exon 13 of 13) protein_coding-exon (ENSMUSG00000053205.9, exon 13 of 13) -17375 ENSMUSG00000096383.1 ENSMUSG00000096383 ENSMUST00000179366 Gm25353 miRNA Interval_78809 chr18 20739601 20741639 + 0 NA intron (ENSMUSG00000056124.5, intron 1 of 8) protein_coding-intron (ENSMUSG00000056124.5, intron 1 of 8) 5784 ENSMUSG00000056124.5 ENSMUSG00000056124 ENSMUST00000070080 B4galt6 protein_coding Interval_116503 chr4 114818964 114819471 + 0 NA intron (ENSMUSG00000085323.1, intron 1 of 1) antisense-intron (ENSMUSG00000085323.1, intron 1 of 1) -2505 ENSMUSG00000055198.3 ENSMUSG00000055198 ENSMUST00000137570 Gm12830 protein_coding Interval_88396 chr2 4723479 4724181 + 0 NA intron (ENSMUSG00000048186.14, intron 2 of 8) protein_coding-intron (ENSMUSG00000048186.14, intron 2 of 8) 5999 ENSMUSG00000048186.14 ENSMUSG00000048186 ENSMUST00000138322 Bend7 protein_coding Interval_51494 chr14 28504753 28507940 + 0 NA intron (ENSMUSG00000021994.15, intron 1 of 4) protein_coding-intron (ENSMUSG00000021994.15, intron 1 of 4) -4272 ENSMUSG00000021994.15 ENSMUSG00000021994 ENSMUST00000146192 Wnt5a protein_coding Interval_37594 chr12 70140679 70141415 + 0 NA Intergenic Intergenic -13110 ENSMUSG00000090121.10 ENSMUSG00000090121 ENSMUST00000161541 Abhd12b protein_coding Interval_108590 chr3 129341022 129341487 + 0 NA Intergenic Intergenic -8990 ENSMUSG00000028024.14 ENSMUSG00000028024 ENSMUST00000165217 Enpep protein_coding Interval_14748 chr10 39563590 39564065 + 0 NA exon (ENSMUSG00000019843.14, exon 14 of 14) protein_coding-exon (ENSMUSG00000019843.14, exon 14 of 14) -5765 ENSMUSG00000087014.1 ENSMUSG00000087014 ENSMUST00000153722 Gm16364 antisense Interval_163344 chr9 20975437 20977316 + 0 NA exon (ENSMUSG00000043895.6, exon 1 of 1) protein_coding-exon (ENSMUSG00000043895.6, exon 1 of 1) -2398 ENSMUSG00000043895.6 ENSMUSG00000043895 ENSMUST00000214333 S1pr2 protein_coding Interval_38767 chr12 82169008 82170623 + 0 NA promoter-TSS (ENSMUSG00000113746.1) lincRNA-promoter-TSS (ENSMUSG00000113746.1) 339 ENSMUSG00000042700.16 ENSMUSG00000042700 ENSMUST00000221327 Sipa1l1 protein_coding Interval_159682 chr8 96939436 96939628 + 0 NA Intergenic Intergenic -224261 ENSMUSG00000110715.1 ENSMUSG00000110715 ENSMUST00000212776 Gm5131 processed_pseudogene Interval_109197 chr3 137844317 137844791 + 0 NA Intergenic Intergenic 19629 ENSMUSG00000105676.1 ENSMUSG00000105676 ENSMUST00000198830 Gm43403 antisense Interval_97847 chr2 144410391 144411232 + 0 NA Intergenic Intergenic 41815 ENSMUSG00000098387.2 ENSMUSG00000098387 ENSMUST00000183618 Pet117 protein_coding Interval_76957 chr17 85157937 85158399 + 0 NA intron (ENSMUSG00000071037.6, intron 3 of 10) protein_coding-intron (ENSMUSG00000071037.6, intron 3 of 10) 67562 ENSMUSG00000071037.6 ENSMUSG00000071037 ENSMUST00000234501 Camkmt protein_coding Interval_169698 chr9 100468219 100468869 + 0 NA intron (ENSMUSG00000044244.18, intron 3 of 4) protein_coding-intron (ENSMUSG00000044244.18, intron 3 of 6) 2065 ENSMUSG00000044244.18 ENSMUSG00000044244 ENSMUST00000122880 Il20rb protein_coding Interval_31036 chr11 97816989 97818928 + 0 NA intron (ENSMUSG00000038366.15, intron 2 of 2) protein_coding-intron (ENSMUSG00000038366.15, intron 3 of 6) 2710 ENSMUSG00000038366.15 ENSMUSG00000038366 ENSMUST00000107568 Lasp1 protein_coding Interval_28279 chr11 74857216 74858295 + 0 NA exon (ENSMUSG00000038351.14, exon 16 of 23) protein_coding-exon (ENSMUSG00000038351.14, exon 16 of 23) 10439 ENSMUSG00000098317.1 ENSMUSG00000098317 ENSMUST00000184562 Mir6926 miRNA Interval_173187 chrX 73956895 73957094 + 0 NA intron (ENSMUSG00000031386.14, intron 5 of 25) protein_coding-intron (ENSMUSG00000031386.14, intron 5 of 25) -9562 ENSMUSG00000031386.14 ENSMUSG00000031386 ENSMUST00000128325 Hcfc1 protein_coding Interval_71778 chr17 26029265 26029725 + 0 NA intron (ENSMUSG00000037098.18, intron 2 of 14) protein_coding-intron (ENSMUSG00000037098.18, intron 2 of 13) -11035 ENSMUSG00000037098.18 ENSMUSG00000037098 ENSMUST00000126306 Rab11fip3 protein_coding Interval_129333 chr5 119199921 119200593 + 0 NA promoter-TSS (ENSMUSG00000107334.1) lincRNA-promoter-TSS (ENSMUSG00000107334.1) -239 ENSMUSG00000107334.1 ENSMUSG00000107334 ENSMUST00000200918 Gm7538 lincRNA Interval_24811 chr11 39411878 39412364 + 0 NA Intergenic Intergenic 315591 ENSMUSG00000083806.1 ENSMUSG00000083806 ENSMUST00000117479 Gm12131 processed_pseudogene Interval_10939 chr1 177338174 177339554 + 0 NA Intergenic Intergenic 69512 ENSMUSG00000103633.1 ENSMUSG00000103633 ENSMUST00000195582 Gm38328 processed_pseudogene Interval_58229 chr15 31235217 31236094 + 0 NA intron (ENSMUSG00000039168.15, intron 1 of 3) protein_coding-intron (ENSMUSG00000039168.15, intron 1 of 3) 11095 ENSMUSG00000039168.15 ENSMUSG00000039168 ENSMUST00000185618 Dap protein_coding Interval_111399 chr4 20627044 20628444 + 0 NA intron (ENSMUSG00000055761.14, intron 1 of 5) protein_coding-intron (ENSMUSG00000055761.14, intron 1 of 4) 150823 ENSMUSG00000055761.14 ENSMUSG00000055761 ENSMUST00000102998 Nkain3 protein_coding Interval_102198 chr3 19385855 19386166 + 0 NA Intergenic Intergenic 55237 ENSMUSG00000089149.1 ENSMUSG00000089149 ENSMUST00000158524 Gm22282 misc_RNA Interval_157074 chr8 64969675 64970669 + 0 NA Intergenic Intergenic 10629 ENSMUSG00000025521.15 ENSMUSG00000025521 ENSMUST00000211405 Tmem192 protein_coding Interval_96237 chr2 120835181 120835826 + 0 NA intron (ENSMUSG00000090100.7, intron 1 of 15) protein_coding-intron (ENSMUSG00000090100.7, intron 1 of 15) 14887 ENSMUSG00000090100.7 ENSMUSG00000090100 ENSMUST00000141921 Ttbk2 protein_coding Interval_13822 chr10 23086641 23086972 + 0 NA Intergenic Intergenic 80165 ENSMUSG00000094033.1 ENSMUSG00000094033 ENSMUST00000178790 Gm24655 snRNA Interval_42926 chr13 21440375 21441671 + 0 NA promoter-TSS (ENSMUSG00000055313.15) protein_coding-promoter-TSS (ENSMUSG00000055313.15) 552 ENSMUSG00000085788.1 ENSMUSG00000085788 ENSMUST00000122926 4930470G03Rik bidirectional_promoter_lncRNA Interval_44571 chr13 46260467 46261888 + 0 NA Intergenic Intergenic -12544 ENSMUSG00000063529.3 ENSMUSG00000063529 ENSMUST00000076622 Stmnd1 protein_coding Interval_117142 chr4 119960847 119961637 + 0 NA intron (ENSMUSG00000028634.17, intron 1 of 1) protein_coding-intron (ENSMUSG00000028634.17, intron 1 of 8) -71524 ENSMUSG00000028634.17 ENSMUSG00000028634 ENSMUST00000166542 Hivep3 protein_coding Interval_104967 chr3 79385502 79386259 + 0 NA intron (ENSMUSG00000091685.6, intron 1 of 3) protein_coding-intron (ENSMUSG00000091685.6, intron 1 of 4) 40501 ENSMUSG00000091685.6 ENSMUSG00000091685 ENSMUST00000199658 Gm17359 protein_coding Interval_34944 chr12 14764886 14766146 + 0 NA Intergenic Intergenic 111854 ENSMUSG00000113663.1 ENSMUSG00000113663 ENSMUST00000223066 Gm48504 TEC Interval_6500 chr1 112779151 112781232 + 0 NA Intergenic Intergenic 95797 ENSMUSG00000099884.1 ENSMUSG00000099884 ENSMUST00000185696 Gm8204 processed_pseudogene Interval_60869 chr15 77265414 77266205 + 0 NA intron (ENSMUSG00000033565.18, intron 1 of 13) protein_coding-intron (ENSMUSG00000033565.18, intron 1 of 12) -23258 ENSMUSG00000089242.1 ENSMUSG00000089242 ENSMUST00000158617 Gm24056 snRNA Interval_5313 chr1 87484353 87484544 + 0 NA intron (ENSMUSG00000026259.14, intron 2 of 6) protein_coding-intron (ENSMUSG00000026259.14, intron 7 of 12) 1729 ENSMUSG00000026259.14 ENSMUSG00000026259 ENSMUST00000166463 Ngef protein_coding Interval_121331 chr4 155033493 155033748 + 0 NA intron (ENSMUSG00000029055.17, intron 1 of 6) protein_coding-intron (ENSMUSG00000029055.17, intron 2 of 3) -8426 ENSMUSG00000073686.2 ENSMUSG00000073686 ENSMUST00000097750 Gm10564 antisense Interval_27957 chr11 71501678 71503027 + 0 NA Intergenic Intergenic -10025 ENSMUSG00000072753.12 ENSMUSG00000072753 ENSMUST00000171420 9230020A06Rik lincRNA Interval_165689 chr9 50986040 50987333 + 0 NA intron (ENSMUSG00000037112.16, intron 3 of 3) protein_coding-intron (ENSMUSG00000037112.16, intron 3 of 15) 22314 ENSMUSG00000037112.16 ENSMUSG00000037112 ENSMUST00000176327 Sik2 protein_coding Interval_113520 chr4 55500550 55501259 + 0 NA Intergenic Intergenic -7390 ENSMUSG00000082952.1 ENSMUSG00000082952 ENSMUST00000119155 Gm12507 processed_pseudogene Interval_36117 chr12 36019744 36021393 + 0 NA exon (ENSMUSG00000020577.17, exon 5 of 6) protein_coding-exon (ENSMUSG00000020577.17, exon 5 of 6) 19367 ENSMUSG00000020577.17 ENSMUSG00000020577 ENSMUST00000222584 Tspan13 protein_coding Interval_49025 chr13 107021483 107023158 + 0 NA promoter-TSS (ENSMUSG00000021693.20) protein_coding-promoter-TSS (ENSMUSG00000021693.20) -233 ENSMUSG00000071181.2 ENSMUSG00000071181 ENSMUST00000224838 3830408C21Rik processed_transcript Interval_67198 chr16 44347070 44348133 + 0 NA promoter-TSS (ENSMUSG00000043065.12) protein_coding-promoter-TSS (ENSMUSG00000043065.12) 187 ENSMUSG00000043065.12 ENSMUSG00000043065 ENSMUST00000126228 Spice1 protein_coding Interval_123568 chr5 33526631 33527896 + 0 NA Intergenic Intergenic -89799 ENSMUSG00000107248.1 ENSMUSG00000107248 ENSMUST00000200726 Gm43851 lincRNA Interval_101423 chr2 181283156 181283756 + 0 NA intron (ENSMUSG00000038705.13, intron 1 of 2) protein_coding-intron (ENSMUSG00000038705.13, intron 1 of 9) 4575 ENSMUSG00000038705.13 ENSMUSG00000038705 ENSMUST00000147665 Gmeb2 protein_coding Interval_89974 chr2 26963711 26965255 + 0 NA promoter-TSS (ENSMUSG00000052406.14) protein_coding-promoter-TSS (ENSMUSG00000052406.14) -8799 ENSMUSG00000052406.14 ENSMUSG00000052406 ENSMUST00000128401 Rexo4 protein_coding Interval_46305 chr13 63567782 63568372 + 0 NA promoter-TSS (ENSMUSG00000102282.1) TEC-promoter-TSS (ENSMUSG00000102282.1) -23 ENSMUSG00000102282.1 ENSMUSG00000102282 ENSMUST00000195845 A930032L01Rik TEC Interval_65855 chr16 29813344 29814751 + 0 NA intron (ENSMUSG00000097307.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000097307.1, intron 1 of 1) 2989 ENSMUSG00000097307.1 ENSMUSG00000097307 ENSMUST00000181815 Gm26834 lincRNA Interval_38524 chr12 79859427 79860065 + 0 NA Intergenic Intergenic 65748 ENSMUSG00000112765.1 ENSMUSG00000112765 ENSMUST00000219857 9430078K24Rik lincRNA Interval_85518 chr19 27884389 27885019 + 0 NA intron (ENSMUSG00000040929.17, intron 2 of 16) protein_coding-intron (ENSMUSG00000040929.17, intron 2 of 15) 26646 ENSMUSG00000092617.1 ENSMUSG00000092617 ENSMUST00000077493 Gm8412 processed_pseudogene Interval_42583 chr13 15860803 15861359 + 0 NA intron (ENSMUSG00000113701.1, intron 3 of 3) transcribed_processed_pseudogene-intron (ENSMUSG00000113701.1, intron 3 of 3) 43765 ENSMUSG00000113290.1 ENSMUSG00000113290 ENSMUST00000222059 A530058O07Rik TEC Interval_31674 chr11 102188749 102190330 + 0 NA promoter-TSS (ENSMUSG00000034793.15) protein_coding-promoter-TSS (ENSMUSG00000034793.15) -2486 ENSMUSG00000034793.15 ENSMUSG00000034793 ENSMUST00000153178 G6pc3 protein_coding Interval_117792 chr4 126251710 126251964 + 0 NA intron (ENSMUSG00000028849.17, intron 1 of 17) protein_coding-intron (ENSMUSG00000028849.17, intron 1 of 16) -10563 ENSMUSG00000028847.8 ENSMUSG00000028847 ENSMUST00000126786 Trappc3 protein_coding Interval_50580 chr14 15977222 15979209 + 0 NA Intergenic Intergenic 58982 ENSMUSG00000114390.1 ENSMUSG00000114390 ENSMUST00000223757 1700062C10Rik lincRNA Interval_90001 chr2 27239436 27239655 + 0 NA intron (ENSMUSG00000009614.16, intron 5 of 20) protein_coding-intron (ENSMUSG00000009614.16, intron 5 of 20) -29608 ENSMUSG00000009614.16 ENSMUSG00000009614 ENSMUST00000129975 Sardh protein_coding Interval_64610 chr16 13651881 13652198 + 0 NA intron (ENSMUSG00000022685.9, intron 4 of 7) protein_coding-intron (ENSMUSG00000022685.9, intron 8 of 23) 16099 ENSMUSG00000022685.9 ENSMUSG00000022685 ENSMUST00000229251 Parn protein_coding Interval_50157 chr14 8335924 8336424 + 0 NA Intergenic Intergenic -26379 ENSMUSG00000021750.16 ENSMUSG00000021750 ENSMUST00000137133 Fam107a protein_coding Interval_52268 chr14 41188756 41190815 + 0 NA Intergenic Intergenic 1868 ENSMUSG00000114927.1 ENSMUSG00000114927 ENSMUST00000224939 Gm47114 processed_pseudogene Interval_48981 chr13 106699854 106700055 + 0 NA Intergenic Intergenic 61625 ENSMUSG00000114422.1 ENSMUSG00000114422 ENSMUST00000225713 Gm30411 lincRNA Interval_34144 chr11 120894012 120894692 + 0 NA intron (ENSMUSG00000048445.6, intron 10 of 18) protein_coding-intron (ENSMUSG00000048445.6, intron 10 of 18) -20681 ENSMUSG00000048445.6 ENSMUSG00000048445 ENSMUST00000143895 Ccdc57 protein_coding Interval_157767 chr8 72895976 72896144 + 0 NA intron (ENSMUSG00000004383.18, intron 8 of 15) protein_coding-intron (ENSMUSG00000004383.18, intron 7 of 14) -100573 ENSMUSG00000110563.1 ENSMUSG00000110563 ENSMUST00000212908 Gm45791 processed_pseudogene Interval_10873 chr1 176504230 176505147 + 0 NA intron (ENSMUSG00000104021.1, intron 2 of 3) lincRNA-intron (ENSMUSG00000104021.1, intron 2 of 3) 22585 ENSMUSG00000104021.1 ENSMUSG00000104021 ENSMUST00000194241 Gm36536 lincRNA Interval_62493 chr15 93471541 93472767 + 0 NA intron (ENSMUSG00000036167.16, intron 7 of 7) protein_coding-intron (ENSMUSG00000036167.16, intron 9 of 9) 47369 ENSMUSG00000036158.12 ENSMUSG00000036158 ENSMUST00000048982 Prickle1 protein_coding Interval_111316 chr4 18582429 18582719 + 0 NA intron (ENSMUSG00000087402.1, intron 2 of 10) processed_transcript-intron (ENSMUSG00000087402.1, intron 2 of 10) 110385 ENSMUSG00000083660.1 ENSMUSG00000083660 ENSMUST00000119687 Gm11853 processed_pseudogene Interval_15728 chr10 54907651 54908225 + 0 NA Intergenic Intergenic -149255 ENSMUSG00000112575.1 ENSMUSG00000112575 ENSMUST00000220306 Gm31849 processed_pseudogene Interval_19736 chr10 108389382 108390317 + 0 NA intron (ENSMUSG00000035873.8, intron 3 of 6) protein_coding-intron (ENSMUSG00000035873.8, intron 3 of 6) 26184 ENSMUSG00000065653.1 ENSMUSG00000065653 ENSMUST00000083719 Gm23105 snoRNA Interval_138789 chr6 91866292 91866495 + 0 NA Intergenic Intergenic 11592 ENSMUSG00000108310.1 ENSMUSG00000108310 ENSMUST00000206250 Gm44712 TEC Interval_16818 chr10 68359299 68359632 + 0 NA Intergenic Intergenic -38323 ENSMUSG00000112157.1 ENSMUSG00000112157 ENSMUST00000218225 4930545H06Rik lincRNA Interval_110383 chr3 157585754 157586220 + 0 NA intron (ENSMUSG00000040016.16, intron 1 of 1) protein_coding-intron (ENSMUSG00000040016.16, intron 1 of 2) 19087 ENSMUSG00000040016.16 ENSMUSG00000040016 ENSMUST00000173533 Ptger3 protein_coding Interval_162849 chr9 10341736 10341949 + 0 NA intron (ENSMUSG00000039488.15, intron 3 of 24) protein_coding-intron (ENSMUSG00000039488.15, intron 1 of 22) -46686 ENSMUSG00000096815.1 ENSMUSG00000096815 ENSMUST00000179931 Gm25086 miRNA Interval_148616 chr7 83376038 83376232 + 0 NA Intergenic Intergenic -6706 ENSMUSG00000109506.1 ENSMUSG00000109506 ENSMUST00000208430 Gm44724 lincRNA Interval_40062 chr12 100948001 100948872 + 0 NA exon (ENSMUSG00000097160.2, exon 4 of 4) antisense-exon (ENSMUSG00000097160.2, exon 4 of 4) 6579 ENSMUSG00000097160.2 ENSMUSG00000097160 ENSMUST00000221309 A630072L19Rik antisense Interval_124686 chr5 53266641 53267861 + 0 NA promoter-TSS (ENSMUSG00000061461.11) protein_coding-promoter-TSS (ENSMUSG00000061461.11) 61 ENSMUSG00000061461.11 ENSMUSG00000061461 ENSMUST00000204089 Smim20 protein_coding Interval_74982 chr17 58932269 58933402 + 0 NA intron (ENSMUSG00000024227.14, intron 6 of 12) protein_coding-intron (ENSMUSG00000024227.14, intron 6 of 12) -39340 ENSMUSG00000024227.14 ENSMUSG00000024227 ENSMUST00000177360 Pdzph1 protein_coding Interval_94797 chr2 94405774 94408351 + 0 NA promoter-TSS (ENSMUSG00000027194.16) protein_coding-promoter-TSS (ENSMUSG00000027194.16) 911 ENSMUSG00000045464.5 ENSMUSG00000045464 ENSMUST00000152313 2810002D19Rik processed_transcript Interval_16504 chr10 63243568 63245009 + 0 NA promoter-TSS (ENSMUSG00000045391.4) bidirectional_promoter_lncRNA-promoter-TSS (ENSMUSG00000045391.4) -135 ENSMUSG00000045391.4 ENSMUSG00000045391 ENSMUST00000054837 1700120B22Rik bidirectional_promoter_lncRNA Interval_109495 chr3 142936061 142936584 + 0 NA Intergenic Intergenic -26289 ENSMUSG00000078162.6 ENSMUSG00000078162 ENSMUST00000181051 Gm2574 processed_pseudogene Interval_112863 chr4 45612008 45612637 + 0 NA Intergenic Intergenic -27422 ENSMUSG00000085980.2 ENSMUSG00000085980 ENSMUST00000211200 Gm12408 lincRNA Interval_142841 chr6 146368883 146369056 + 0 NA intron (ENSMUSG00000030287.15, intron 11 of 12) protein_coding-intron (ENSMUSG00000030287.15, intron 21 of 56) -7448 ENSMUSG00000107743.1 ENSMUSG00000107743 ENSMUST00000204247 Gm44087 TEC Interval_104115 chr3 58711715 58711971 + 0 NA intron (ENSMUSG00000097725.4, intron 2 of 8) lincRNA-intron (ENSMUSG00000097725.4, intron 2 of 8) 14282 ENSMUSG00000105226.1 ENSMUSG00000105226 ENSMUST00000197219 A930028O11Rik TEC Interval_55966 chr14 103442165 103442714 + 0 NA exon (ENSMUSG00000115099.1, exon 3 of 4) lincRNA-exon (ENSMUSG00000115099.1, exon 3 of 4) 17534 ENSMUSG00000115099.1 ENSMUSG00000115099 ENSMUST00000226705 1700087I21Rik lincRNA Interval_156767 chr8 58471002 58471666 + 0 NA intron (ENSMUSG00000096914.3, intron 4 of 12) protein_coding-intron (ENSMUSG00000096914.3, intron 3 of 3) -51960 ENSMUSG00000090003.1 ENSMUSG00000090003 ENSMUST00000161344 Gm15882 antisense Interval_94491 chr2 91635119 91637470 + 0 NA intron (ENSMUSG00000027249.15, intron 1 of 3) protein_coding-intron (ENSMUSG00000027249.15, intron 1 of 13) 101 ENSMUSG00000027249.15 ENSMUSG00000027249 ENSMUST00000153182 F2 protein_coding Interval_19899 chr10 111071801 111072226 + 0 NA Intergenic Intergenic 30858 ENSMUSG00000112165.1 ENSMUSG00000112165 ENSMUST00000218334 Gm48851 processed_pseudogene Interval_19668 chr10 107609589 107610427 + 0 NA intron (ENSMUSG00000035916.8, intron 25 of 44) protein_coding-intron (ENSMUSG00000035916.8, intron 25 of 44) 110019 ENSMUSG00000035916.8 ENSMUSG00000035916 ENSMUST00000218399 Ptprq protein_coding Interval_107307 chr3 105677643 105678478 + 0 NA TTS (ENSMUSG00000027905.15) protein_coding-TTS (ENSMUSG00000027905.15) 9055 ENSMUSG00000040896.16 ENSMUSG00000040896 ENSMUST00000147209 Kcnd3 protein_coding Interval_109249 chr3 138304443 138305070 + 0 NA intron (ENSMUSG00000089635.1, intron 2 of 2) antisense-intron (ENSMUSG00000089635.1, intron 2 of 2) 2266 ENSMUSG00000089635.1 ENSMUSG00000089635 ENSMUST00000160080 Gm16559 antisense Interval_144595 chr7 26711294 26711630 + 0 NA Intergenic Intergenic -25025 ENSMUSG00000040650.8 ENSMUSG00000040650 ENSMUST00000077356 Cyp2b23 protein_coding Interval_127395 chr5 103705322 103706508 + 0 NA intron (ENSMUSG00000029313.18, intron 1 of 6) protein_coding-intron (ENSMUSG00000029313.18, intron 1 of 6) 47678 ENSMUSG00000088121.1 ENSMUSG00000088121 ENSMUST00000157496 Gm25721 snRNA Interval_140187 chr6 115076535 115077826 + 0 NA Intergenic Intergenic -22374 ENSMUSG00000089134.1 ENSMUSG00000089134 ENSMUST00000158509 Gm24767 miRNA Interval_160892 chr8 114688601 114689967 + 0 NA intron (ENSMUSG00000004637.15, intron 6 of 8) protein_coding-intron (ENSMUSG00000004637.15, intron 6 of 8) 18722 ENSMUSG00000089797.1 ENSMUSG00000089797 ENSMUST00000161914 Gm16118 antisense Interval_42411 chr13 13357730 13358435 + 0 NA TTS (ENSMUSG00000021306.11) protein_coding-TTS (ENSMUSG00000021306.11) 28598 ENSMUSG00000084734.1 ENSMUSG00000084734 ENSMUST00000122785 Gm25804 snoRNA Interval_16170 chr10 61202249 61202862 + 0 NA intron (ENSMUSG00000059901.12, intron 19 of 21) protein_coding-intron (ENSMUSG00000059901.12, intron 19 of 21) 27293 ENSMUSG00000020096.21 ENSMUSG00000020096 ENSMUST00000126831 Tbata protein_coding Interval_70012 chr17 4450098 4450500 + 0 NA Intergenic Intergenic -184679 ENSMUSG00000116767.1 ENSMUSG00000116767 ENSMUST00000232624 4930517M08Rik lincRNA Interval_103409 chr3 41348763 41349391 + 0 NA Intergenic Intergenic -5070 ENSMUSG00000105297.1 ENSMUSG00000105297 ENSMUST00000196142 1700052H01Rik lincRNA Interval_32445 chr11 107576432 107576702 + 0 NA intron (ENSMUSG00000020721.16, intron 4 of 4) protein_coding-intron (ENSMUSG00000020721.16, intron 3 of 31) -28194 ENSMUSG00000059706.4 ENSMUSG00000059706 ENSMUST00000147445 A830035A12Rik processed_transcript Interval_66184 chr16 32192516 32192779 + 0 NA Intergenic Intergenic 12824 ENSMUSG00000075269.5 ENSMUSG00000075269 ENSMUST00000099990 Bex6 protein_coding Interval_10728 chr1 173630539 173630750 + 0 NA promoter-TSS (ENSMUSG00000043263.13) protein_coding-promoter-TSS (ENSMUSG00000043263.13) -381 ENSMUSG00000043263.13 ENSMUSG00000043263 ENSMUST00000193727 Ifi209 protein_coding Interval_115741 chr4 103198961 103199649 + 0 NA intron (ENSMUSG00000028521.17, intron 8 of 11) protein_coding-intron (ENSMUSG00000028521.17, intron 8 of 11) 15498 ENSMUSG00000028521.17 ENSMUSG00000028521 ENSMUST00000154845 Slc35d1 protein_coding Interval_97793 chr2 144122097 144123651 + 0 NA intron (ENSMUSG00000074758.10, intron 1 of 2) lincRNA-intron (ENSMUSG00000074758.10, intron 2 of 3) 20499 ENSMUSG00000082480.1 ENSMUSG00000082480 ENSMUST00000118911 Gm11687 processed_pseudogene Interval_80937 chr18 50726029 50726234 + 0 NA Intergenic Intergenic -124712 ENSMUSG00000048875.3 ENSMUSG00000048875 ENSMUST00000056460 Pudp protein_coding Interval_155754 chr8 36861867 36862378 + 0 NA intron (ENSMUSG00000031523.16, intron 2 of 2) protein_coding-intron (ENSMUSG00000031523.16, intron 2 of 3) 90314 ENSMUSG00000031523.16 ENSMUSG00000031523 ENSMUST00000179501 Dlc1 protein_coding Interval_156828 chr8 60902152 60902890 + 0 NA intron (ENSMUSG00000038005.15, intron 4 of 6) protein_coding-intron (ENSMUSG00000038005.15, intron 5 of 7) -3510 ENSMUSG00000038005.15 ENSMUSG00000038005 ENSMUST00000211016 Hpf1 protein_coding Interval_60384 chr15 73412960 73415232 + 0 NA intron (ENSMUSG00000022607.18, intron 1 of 3) protein_coding-intron (ENSMUSG00000022607.18, intron 1 of 31) -5857 ENSMUSG00000115602.1 ENSMUSG00000115602 ENSMUST00000228413 Gm7908 processed_pseudogene Interval_159374 chr8 94152356 94154810 + 0 NA TTS (ENSMUSG00000031760.9) protein_coding-TTS (ENSMUSG00000031760.9) 837 ENSMUSG00000031760.9 ENSMUSG00000031760 ENSMUST00000211915 Mt3 protein_coding Interval_152725 chr7 136908661 136910393 + 0 NA intron (ENSMUSG00000054612.4, intron 1 of 4) protein_coding-intron (ENSMUSG00000054612.4, intron 1 of 4) -11414 ENSMUSG00000109721.1 ENSMUSG00000109721 ENSMUST00000210484 Gm45280 TEC Interval_45051 chr13 51741077 51741451 + 0 NA intron (ENSMUSG00000021451.16, intron 2 of 16) protein_coding-intron (ENSMUSG00000021451.16, intron 2 of 15) -24030 ENSMUSG00000092648.1 ENSMUSG00000092648 ENSMUST00000174907 Gm23566 miRNA Interval_39538 chr12 89578988 89579289 + 0 NA intron (ENSMUSG00000066392.12, intron 13 of 18) protein_coding-intron (ENSMUSG00000066392.12, intron 14 of 19) -76585 ENSMUSG00000114153.1 ENSMUSG00000114153 ENSMUST00000222398 Gm48692 TEC Interval_9849 chr1 163106000 163106680 + 0 NA Intergenic Intergenic -2653 ENSMUSG00000103102.1 ENSMUSG00000103102 ENSMUST00000194356 Gm37049 TEC Interval_173002 chrX 61265359 61266362 + 0 NA intron (ENSMUSG00000118604.1, intron 8 of 9) processed_transcript-intron (ENSMUSG00000118604.1, intron 8 of 9) -24943 ENSMUSG00000118608.1 ENSMUSG00000118608 ENSMUST00000239181 Gm4988 transcribed_unprocessed_pseudogene Interval_97544 chr2 139677121 139679090 + 0 NA promoter-TSS (ENSMUSG00000074766.10) protein_coding-promoter-TSS (ENSMUSG00000074766.10) -73 ENSMUSG00000074766.10 ENSMUSG00000074766 ENSMUST00000099307 Ism1 protein_coding Interval_117835 chr4 126508419 126508611 + 0 NA intron (ENSMUSG00000042500.11, intron 12 of 17) protein_coding-intron (ENSMUSG00000042500.11, intron 12 of 17) 8397 ENSMUSG00000042500.11 ENSMUSG00000042500 ENSMUST00000122951 Ago4 protein_coding Interval_109356 chr3 139614601 139615364 + 0 NA intron (ENSMUSG00000047940.13, intron 12 of 13) protein_coding-intron (ENSMUSG00000047940.13, intron 12 of 13) -34397 ENSMUSG00000106574.1 ENSMUSG00000106574 ENSMUST00000199447 Gm2451 processed_pseudogene Interval_87814 chr19 56191756 56192339 + 0 NA Intergenic Intergenic 85598 ENSMUSG00000077223.1 ENSMUSG00000077223 ENSMUST00000104035 Gm22271 snoRNA Interval_100478 chr2 169314752 169315134 + 0 NA Intergenic Intergenic -74138 ENSMUSG00000086840.1 ENSMUSG00000086840 ENSMUST00000148458 Gm14250 lincRNA Interval_66970 chr16 38927785 38928293 + 0 NA TTS (ENSMUSG00000089607.1) snRNA-TTS (ENSMUSG00000089607.1) 830 ENSMUSG00000089607.1 ENSMUSG00000089607 ENSMUST00000158982 Gm22500 snRNA Interval_87682 chr19 54416991 54417644 + 0 NA Intergenic Intergenic -27663 ENSMUSG00000117755.1 ENSMUSG00000117755 ENSMUST00000236789 Gm50188 processed_pseudogene Interval_46762 chr13 70036497 70036883 + 0 NA intron (ENSMUSG00000113074.1, intron 2 of 2) lincRNA-intron (ENSMUSG00000113074.1, intron 2 of 2) -8367 ENSMUSG00000099639.6 ENSMUSG00000099639 ENSMUST00000189784 1700084F23Rik lincRNA Interval_109052 chr3 135479205 135479972 + 0 NA Intergenic Intergenic -4044 ENSMUSG00000105404.1 ENSMUSG00000105404 ENSMUST00000200141 Gm42807 processed_pseudogene Interval_93042 chr2 69754226 69754548 + 0 NA TTS (ENSMUSG00000042133.16) protein_coding-TTS (ENSMUSG00000042133.16) -11795 ENSMUSG00000083007.1 ENSMUSG00000083007 ENSMUST00000118359 Gm13623 processed_pseudogene Interval_55859 chr14 101601954 101602867 + 0 NA intron (ENSMUSG00000033083.16, intron 1 of 20) protein_coding-intron (ENSMUSG00000033083.16, intron 1 of 13) 6076 ENSMUSG00000033083.16 ENSMUSG00000033083 ENSMUST00000160473 Tbc1d4 protein_coding Interval_71755 chr17 25880472 25881692 + 0 NA promoter-TSS (ENSMUSG00000071192.6) protein_coding-promoter-TSS (ENSMUSG00000071192.6) -224 ENSMUSG00000071192.6 ENSMUSG00000071192 ENSMUST00000095487 Wfikkn1 protein_coding Interval_96697 chr2 127237909 127238470 + 0 NA promoter-TSS (ENSMUSG00000003660.10) protein_coding-promoter-TSS (ENSMUSG00000003660.10) 1380 ENSMUSG00000003660.10 ENSMUSG00000003660 ENSMUST00000131435 Snrnp200 protein_coding Interval_59738 chr15 58974321 58974574 + 0 NA intron (ENSMUSG00000022353.10, intron 3 of 14) protein_coding-intron (ENSMUSG00000022353.10, intron 3 of 14) -9689 ENSMUSG00000115062.1 ENSMUSG00000115062 ENSMUST00000226216 4930544F09Rik antisense Interval_140290 chr6 116192683 116194300 + 0 NA promoter-TSS (ENSMUSG00000030126.17) protein_coding-promoter-TSS (ENSMUSG00000030126.17) 2367 ENSMUSG00000082474.3 ENSMUSG00000082474 ENSMUST00000118191 Gm8213 processed_pseudogene Interval_86001 chr19 34846073 34847639 + 0 NA intron (ENSMUSG00000033610.16, intron 1 of 6) protein_coding-intron (ENSMUSG00000033610.16, intron 1 of 6) -26083 ENSMUSG00000065594.1 ENSMUSG00000065594 ENSMUST00000083660 Mir107 miRNA Interval_45266 chr13 53738463 53738666 + 0 NA Intergenic Intergenic -38063 ENSMUSG00000114143.1 ENSMUSG00000114143 ENSMUST00000221931 Gm48548 lincRNA Interval_8406 chr1 138912237 138912454 + 0 NA Intergenic Intergenic 3698 ENSMUSG00000103850.1 ENSMUSG00000103850 ENSMUST00000195391 Gm3933 processed_pseudogene Interval_108736 chr3 130818679 130820297 + 0 NA Intergenic Intergenic 27485 ENSMUSG00000104984.1 ENSMUSG00000104984 ENSMUST00000196234 Gm5982 processed_pseudogene Interval_61084 chr15 79131127 79132165 + 0 NA promoter-TSS (ENSMUSG00000033039.10) protein_coding-promoter-TSS (ENSMUSG00000033039.10) -40 ENSMUSG00000033039.10 ENSMUSG00000033039 ENSMUST00000230202 Micall1 protein_coding Interval_89916 chr2 26458282 26461161 + 0 NA TTS (ENSMUSG00000086714.1) processed_transcript-TTS (ENSMUSG00000086714.1) 2577 ENSMUSG00000085543.1 ENSMUSG00000085543 ENSMUST00000156099 Gm13568 processed_transcript Interval_96233 chr2 120761831 120763372 + 0 NA intron (ENSMUSG00000027284.16, intron 9 of 40) protein_coding-intron (ENSMUSG00000090100.7, intron 10 of 15) -33963 ENSMUSG00000027284.16 ENSMUSG00000027284 ENSMUST00000136725 Cdan1 protein_coding Interval_159622 chr8 95832542 95834203 + 0 NA intron (ENSMUSG00000110661.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000110661.1, intron 1 of 1) 303 ENSMUSG00000110661.1 ENSMUSG00000110661 ENSMUST00000211921 Gm31805 lincRNA Interval_160225 chr8 107261692 107263125 + 0 NA TTS (ENSMUSG00000057657.4) processed_pseudogene-TTS (ENSMUSG00000057657.4) 840 ENSMUSG00000057657.4 ENSMUSG00000057657 ENSMUST00000080443 Rps18-ps3 processed_pseudogene Interval_99711 chr2 164432814 164433705 + 0 NA intron (ENSMUSG00000017009.3, intron 1 of 4) protein_coding-intron (ENSMUSG00000017009.3, intron 1 of 4) 10628 ENSMUSG00000017009.3 ENSMUSG00000017009 ENSMUST00000142909 Sdc4 protein_coding Interval_44225 chr13 42418000 42418534 + 0 NA Intergenic Intergenic 54510 ENSMUSG00000113000.1 ENSMUSG00000113000 ENSMUST00000222369 Gm6049 processed_pseudogene Interval_94935 chr2 101992741 101993241 + 0 NA intron (ENSMUSG00000048058.17, intron 4 of 5) protein_coding-intron (ENSMUSG00000048058.17, intron 4 of 5) -46638 ENSMUSG00000085417.1 ENSMUSG00000085417 ENSMUST00000123891 Gm13919 antisense Interval_113219 chr4 50366641 50366936 + 0 NA Intergenic Intergenic 80042 ENSMUSG00000095394.1 ENSMUSG00000095394 ENSMUST00000104120 Gm25485 snoRNA Interval_163953 chr9 29643032 29643510 + 0 NA intron (ENSMUSG00000059974.10, intron 1 of 2) protein_coding-intron (ENSMUSG00000059974.10, intron 1 of 7) -50761 ENSMUSG00000085638.1 ENSMUSG00000085638 ENSMUST00000141752 Gm15521 sense_intronic Interval_20275 chr10 116591204 116591855 + 0 NA Intergenic Intergenic 24747 ENSMUSG00000112881.1 ENSMUSG00000112881 ENSMUST00000220056 Gm49344 TEC Interval_1325 chr1 20648075 20648778 + 0 NA Intergenic Intergenic -21456 ENSMUSG00000099906.2 ENSMUSG00000099906 ENSMUST00000185494 Gm28653 lincRNA Interval_76083 chr17 74798069 74798648 + 0 NA intron (ENSMUSG00000024078.7, intron 5 of 13) protein_coding-intron (ENSMUSG00000024078.7, intron 12 of 19) 21553 ENSMUSG00000117444.1 ENSMUSG00000117444 ENSMUST00000234963 Gm50020 antisense Interval_40246 chr12 102725139 102726258 + 0 NA intron (ENSMUSG00000098530.1, intron 1 of 1) processed_transcript-intron (ENSMUSG00000096751.3, intron 1 of 2) 1624 ENSMUSG00000100006.1 ENSMUSG00000100006 ENSMUST00000180187 Gm21971 lincRNA Interval_9988 chr1 164620686 164621288 + 0 NA Intergenic Intergenic -10770 ENSMUSG00000103383.1 ENSMUSG00000103383 ENSMUST00000194406 Gm37754 lincRNA Interval_67389 chr16 48279092 48279378 + 0 NA Intergenic Intergenic -4498 ENSMUSG00000058550.15 ENSMUSG00000058550 ENSMUST00000050705 Dppa4 protein_coding Interval_34537 chr12 4953318 4953854 + 0 NA intron (ENSMUSG00000052812.5, intron 9 of 9) protein_coding-intron (ENSMUSG00000052812.5, intron 9 of 30) -28466 ENSMUSG00000052812.5 ENSMUSG00000052812 ENSMUST00000220408 Atad2b protein_coding Interval_87523 chr19 53238826 53239708 + 0 NA intron (ENSMUSG00000025026.15, intron 12 of 14) protein_coding-intron (ENSMUSG00000025026.15, intron 12 of 15) 15923 ENSMUSG00000118314.1 ENSMUSG00000118314 ENSMUST00000237379 1700001K23Rik lincRNA Interval_66137 chr16 31896812 31898170 + 0 NA exon (ENSMUSG00000022780.5, exon 16 of 16) protein_coding-exon (ENSMUSG00000022780.5, exon 16 of 16) 18681 ENSMUSG00000022780.5 ENSMUSG00000022780 ENSMUST00000023464 Meltf protein_coding Interval_162617 chr9 6809523 6809727 + 0 NA Intergenic Intergenic 7782 ENSMUSG00000111464.1 ENSMUSG00000111464 ENSMUST00000213261 Gm48675 processed_pseudogene Interval_100694 chr2 171690645 171691175 + 0 NA Intergenic Intergenic 271221 ENSMUSG00000086823.7 ENSMUSG00000086823 ENSMUST00000125465 1700028P15Rik processed_transcript Interval_108499 chr3 127731216 127731641 + 0 NA promoter-TSS (ENSMUSG00000088537.1) rRNA-promoter-TSS (ENSMUSG00000088537.1) -166 ENSMUSG00000088537.1 ENSMUSG00000088537 ENSMUST00000157912 Gm23279 rRNA Interval_119442 chr4 137657647 137658194 + 0 NA exon (ENSMUSG00000043411.15, exon 28 of 28) protein_coding-exon (ENSMUSG00000043411.15, exon 28 of 28) -6834 ENSMUSG00000041351.16 ENSMUSG00000041351 ENSMUST00000144059 Rap1gap protein_coding Interval_146076 chr7 43680875 43681406 + 0 NA Intergenic Intergenic 9124 ENSMUSG00000038888.8 ENSMUSG00000038888 ENSMUST00000038332 Ctu1 protein_coding Interval_168718 chr9 86288694 86289337 + 0 NA Intergenic Intergenic 27669 ENSMUSG00000083731.1 ENSMUSG00000083731 ENSMUST00000117532 Gm16202 processed_pseudogene Interval_42858 chr13 20471860 20473222 + 0 NA promoter-TSS (ENSMUSG00000041112.17) protein_coding-promoter-TSS (ENSMUSG00000041112.17) 949 ENSMUSG00000113313.1 ENSMUSG00000113313 ENSMUST00000221484 Gm32036 antisense Interval_72376 chr17 29472994 29474183 + 0 NA intron (ENSMUSG00000097125.2, intron 1 of 3) antisense-intron (ENSMUSG00000097125.2, intron 1 of 3) -3957 ENSMUSG00000097125.2 ENSMUSG00000097125 ENSMUST00000234684 Gm26885 antisense Interval_49963 chr13 118965132 118965325 + 0 NA Intergenic Intergenic -106814 ENSMUSG00000114868.1 ENSMUSG00000114868 ENSMUST00000224309 Gm47335 processed_pseudogene Interval_133412 chr6 4872281 4873180 + 0 NA Intergenic Intergenic 21048 ENSMUSG00000083041.2 ENSMUSG00000083041 ENSMUST00000121071 Gmfg-ps processed_pseudogene Interval_17323 chr10 75872561 75873773 + 0 NA Intergenic Intergenic -2264 ENSMUSG00000112306.1 ENSMUSG00000112306 ENSMUST00000220036 Gm47744 processed_pseudogene Interval_82895 chr18 78499557 78499798 + 0 NA intron (ENSMUSG00000024552.16, intron 2 of 21) protein_coding-intron (ENSMUSG00000024552.16, intron 2 of 11) 22799 ENSMUSG00000117661.1 ENSMUSG00000117661 ENSMUST00000235470 4931439C15Rik antisense Interval_116712 chr4 116782161 116782770 + 0 NA intron (ENSMUSG00000033985.17, intron 1 of 5) protein_coding-intron (ENSMUSG00000033985.17, intron 4 of 10) 10702 ENSMUSG00000033985.17 ENSMUSG00000033985 ENSMUST00000142529 Tesk2 protein_coding Interval_18585 chr10 88178963 88179382 + 0 NA TTS (ENSMUSG00000035351.16) protein_coding-TTS (ENSMUSG00000035351.16) -14099 ENSMUSG00000088843.1 ENSMUSG00000088843 ENSMUST00000158218 Gm26357 snRNA Interval_49013 chr13 106912767 106914206 + 0 NA intron (ENSMUSG00000042590.17, intron 2 of 29) protein_coding-intron (ENSMUSG00000042590.17, intron 3 of 29) 32043 ENSMUSG00000114572.1 ENSMUSG00000114572 ENSMUST00000225875 Gm48457 processed_pseudogene Interval_6757 chr1 119292223 119292425 + 0 NA Intergenic Intergenic 34509 ENSMUSG00000099860.1 ENSMUSG00000099860 ENSMUST00000189894 Gm29456 lincRNA Interval_39492 chr12 88440036 88441042 + 0 NA TTS (ENSMUSG00000113087.1) antisense-TTS (ENSMUSG00000113087.1) 1680 ENSMUSG00000113087.1 ENSMUSG00000113087 ENSMUST00000221624 4930473H19Rik antisense Interval_95792 chr2 116386536 116387396 + 0 NA Intergenic Intergenic 141524 ENSMUSG00000081787.1 ENSMUSG00000081787 ENSMUST00000120190 Gm13991 processed_pseudogene Interval_118885 chr4 134254115 134254985 + 0 NA promoter-TSS (ENSMUSG00000050105.5) protein_coding-promoter-TSS (ENSMUSG00000050105.5) -1527 ENSMUSG00000050105.5 ENSMUSG00000050105 ENSMUST00000138366 Grrp1 protein_coding Interval_154700 chr8 22682699 22683394 + 0 NA intron (ENSMUSG00000031537.15, intron 5 of 7) protein_coding-intron (ENSMUSG00000031537.15, intron 5 of 21) -3219 ENSMUSG00000085199.1 ENSMUSG00000085199 ENSMUST00000143638 Gm15346 antisense Interval_148437 chr7 81229239 81229467 + 0 NA intron (ENSMUSG00000025584.17, intron 1 of 21) protein_coding-intron (ENSMUSG00000025584.17, intron 1 of 21) -6479 ENSMUSG00000083774.1 ENSMUSG00000083774 ENSMUST00000121753 Gm7180 processed_pseudogene Interval_31860 chr11 103412218 103413487 + 0 NA promoter-TSS (ENSMUSG00000034247.9) protein_coding-promoter-TSS (ENSMUSG00000034247.9) -8884 ENSMUSG00000110636.1 ENSMUSG00000110636 ENSMUST00000212331 Gm39397 lincRNA Interval_71423 chr17 23664466 23665004 + 0 NA promoter-TSS (ENSMUSG00000043782.9) protein_coding-promoter-TSS (ENSMUSG00000043782.9) -1391 ENSMUSG00000043782.9 ENSMUSG00000043782 ENSMUST00000233930 Bicdl2 protein_coding Interval_146916 chr7 55849508 55850693 + 0 NA intron (ENSMUSG00000030447.15, intron 1 of 6) protein_coding-intron (ENSMUSG00000030447.15, intron 1 of 30) -21759 ENSMUSG00000030447.15 ENSMUSG00000030447 ENSMUST00000205656 Cyfip1 protein_coding Interval_114361 chr4 74273270 74273460 + 0 NA intron (ENSMUSG00000028397.13, intron 2 of 7) protein_coding-intron (ENSMUSG00000028397.13, intron 3 of 21) 10556 ENSMUSG00000028397.13 ENSMUSG00000028397 ENSMUST00000150439 Kdm4c protein_coding Interval_99348 chr2 159938346 159938875 + 0 NA intron (ENSMUSG00000086558.1, intron 1 of 3) lincRNA-intron (ENSMUSG00000086558.1, intron 1 of 3) -8731 ENSMUSG00000085198.1 ENSMUSG00000085198 ENSMUST00000133091 4933416E03Rik processed_transcript Interval_8930 chr1 152386084 152387016 + 0 NA promoter-TSS (ENSMUSG00000014980.14) protein_coding-promoter-TSS (ENSMUSG00000014980.14) 70 ENSMUSG00000014980.14 ENSMUSG00000014980 ENSMUST00000188105 Tsen15 protein_coding Interval_20585 chr10 119213428 119213775 + 0 NA promoter-TSS (ENSMUSG00000020114.12) protein_coding-promoter-TSS (ENSMUSG00000020114.12) -992 ENSMUSG00000020114.12 ENSMUSG00000020114 ENSMUST00000126373 Cand1 protein_coding Interval_168688 chr9 85898419 85898896 + 0 NA Intergenic Intergenic 44543 ENSMUSG00000110946.1 ENSMUSG00000110946 ENSMUST00000213921 Gm47604 lincRNA Interval_169819 chr9 102189554 102190576 + 0 NA intron (ENSMUSG00000032537.15, intron 3 of 4) protein_coding-intron (ENSMUSG00000032537.15, intron 3 of 15) 17327 ENSMUSG00000102963.1 ENSMUSG00000102963 ENSMUST00000192536 Gm37945 TEC Interval_6339 chr1 106054922 106055199 + 0 NA Intergenic Intergenic 20834 ENSMUSG00000102501.1 ENSMUSG00000102501 ENSMUST00000193577 Gm37372 TEC Interval_153453 chr7 144887448 144889197 + 0 NA Intergenic Intergenic -8219 ENSMUSG00000031073.6 ENSMUSG00000031073 ENSMUST00000207229 Fgf15 protein_coding Interval_3259 chr1 55215450 55215696 + 0 NA intron (ENSMUSG00000025978.14, intron 1 of 5) protein_coding-intron (ENSMUSG00000025978.14, intron 1 of 8) -10725 ENSMUSG00000097649.2 ENSMUSG00000097649 ENSMUST00000209801 Gm10561 antisense Interval_75848 chr17 71806098 71806438 + 0 NA intron (ENSMUSG00000024059.10, intron 6 of 16) protein_coding-intron (ENSMUSG00000024059.10, intron 6 of 15) -22239 ENSMUSG00000024059.10 ENSMUSG00000024059 ENSMUST00000230290 Clip4 protein_coding Interval_81900 chr18 65694951 65695374 + 0 NA Intergenic Intergenic -3122 ENSMUSG00000046610.15 ENSMUSG00000046610 ENSMUST00000134343 Oacyl protein_coding Interval_20214 chr10 116021715 116021900 + 0 NA intron (ENSMUSG00000020151.16, intron 1 of 2) protein_coding-intron (ENSMUSG00000020151.16, intron 1 of 13) 91895 ENSMUSG00000074734.3 ENSMUSG00000074734 ENSMUST00000219858 Taf7l2 protein_coding Interval_149649 chr7 100388804 100389001 + 0 NA intron (ENSMUSG00000047248.20, intron 4 of 17) protein_coding-intron (ENSMUSG00000047248.20, intron 3 of 32) 7308 ENSMUSG00000109046.1 ENSMUSG00000109046 ENSMUST00000208092 Gm44571 processed_pseudogene Interval_29172 chr11 81004175 81004394 + 0 NA intron (ENSMUSG00000020704.13, intron 1 of 9) protein_coding-intron (ENSMUSG00000020704.13, intron 1 of 9) -42510 ENSMUSG00000082027.1 ENSMUSG00000082027 ENSMUST00000119111 Gm11416 processed_pseudogene Interval_43604 chr13 34046167 34046798 + 0 NA intron (ENSMUSG00000038286.11, intron 2 of 4) protein_coding-intron (ENSMUSG00000038286.11, intron 2 of 6) 11956 ENSMUSG00000091462.2 ENSMUSG00000091462 ENSMUST00000163843 Gm17084 processed_pseudogene Interval_45009 chr13 51407406 51407616 + 0 NA intron (ENSMUSG00000112959.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000112959.1, intron 1 of 1) -1128 ENSMUSG00000067586.4 ENSMUSG00000067586 ENSMUST00000087978 S1pr3 protein_coding Interval_123836 chr5 35839267 35839840 + 0 NA intron (ENSMUSG00000029095.17, intron 3 of 7) protein_coding-intron (ENSMUSG00000029095.17, intron 10 of 19) -18341 ENSMUSG00000029095.17 ENSMUSG00000029095 ENSMUST00000153529 Ablim2 protein_coding Interval_24941 chr11 41761948 41762910 + 0 NA intron (ENSMUSG00000087306.7, intron 2 of 8) processed_transcript-intron (ENSMUSG00000087306.7, intron 2 of 8) 27390 ENSMUSG00000084293.1 ENSMUSG00000084293 ENSMUST00000119666 Gm12143 processed_pseudogene Interval_130130 chr5 124453816 124454045 + 0 NA intron (ENSMUSG00000049327.17, intron 4 of 6) protein_coding-intron (ENSMUSG00000049327.17, intron 5 of 7) 13963 ENSMUSG00000049327.17 ENSMUSG00000049327 ENSMUST00000125588 Kmt5a protein_coding Interval_67541 chr16 50481571 50482857 + 0 NA Intergenic Intergenic -44031 ENSMUSG00000097694.8 ENSMUSG00000097694 ENSMUST00000181884 G730013B05Rik lincRNA Interval_158829 chr8 86908547 86909249 + 0 NA intron (ENSMUSG00000098534.1, intron 2 of 2) lincRNA-intron (ENSMUSG00000098534.1, intron 2 of 2) -6259 ENSMUSG00000109706.1 ENSMUSG00000109706 ENSMUST00000210405 Fth-ps3 processed_pseudogene Interval_38159 chr12 76042053 76043959 + 0 NA intron (ENSMUSG00000063450.14, intron 82 of 114) protein_coding-intron (ENSMUSG00000063450.14, intron 82 of 115) 109621 ENSMUSG00000046580.10 ENSMUSG00000046580 ENSMUST00000121461 Gm7862 processed_pseudogene Interval_52844 chr14 51037732 51038457 + 0 NA TTS (ENSMUSG00000052382.5) protein_coding-TTS (ENSMUSG00000052382.5) 3775 ENSMUSG00000052382.5 ENSMUSG00000052382 ENSMUST00000064214 Rnase9 protein_coding Interval_100563 chr2 170142482 170142993 + 0 NA promoter-TSS (ENSMUSG00000052056.14) protein_coding-promoter-TSS (ENSMUSG00000052056.14) 5366 ENSMUSG00000052056.14 ENSMUSG00000052056 ENSMUST00000149318 Zfp217 protein_coding Interval_73720 chr17 42977127 42978731 + 0 NA Intergenic Intergenic -38639 ENSMUSG00000023915.5 ENSMUSG00000023915 ENSMUST00000233482 Tnfrsf21 protein_coding Interval_5656 chr1 90594433 90594681 + 0 NA Intergenic Intergenic -8919 ENSMUSG00000034432.11 ENSMUSG00000034432 ENSMUST00000186882 Cops8 protein_coding Interval_84588 chr19 13812807 13813260 + 0 NA Intergenic Intergenic 6414 ENSMUSG00000045395.4 ENSMUSG00000045395 ENSMUST00000055672 Olfr1499 protein_coding Interval_49030 chr13 107072532 107073989 + 0 NA intron (ENSMUSG00000114311.1, intron 2 of 3) lincRNA-intron (ENSMUSG00000114311.1, intron 2 of 3) 9567 ENSMUSG00000114311.1 ENSMUSG00000114311 ENSMUST00000224729 Gm31452 lincRNA Interval_92244 chr2 57289831 57290153 + 0 NA exon (ENSMUSG00000026827.12, exon 3 of 17) protein_coding-exon (ENSMUSG00000026827.12, exon 3 of 17) -14306 ENSMUSG00000084292.1 ENSMUSG00000084292 ENSMUST00000118714 Gm13535 processed_pseudogene Interval_34950 chr12 15051349 15051882 + 0 NA promoter-TSS (ENSMUSG00000113644.1) lincRNA-promoter-TSS (ENSMUSG00000113644.1) -1226 ENSMUSG00000113644.1 ENSMUSG00000113644 ENSMUST00000220988 4930448C13Rik lincRNA Interval_167500 chr9 70082124 70083437 + 0 NA Intergenic Intergenic 9857 ENSMUSG00000111043.1 ENSMUSG00000111043 ENSMUST00000215316 2210414F02Rik lincRNA Interval_20786 chr10 120944819 120945051 + 0 NA intron (ENSMUSG00000048661.14, intron 4 of 13) protein_coding-intron (ENSMUSG00000048661.14, intron 4 of 13) 16749 ENSMUSG00000082936.1 ENSMUSG00000082936 ENSMUST00000118291 Gm16166 processed_pseudogene Interval_63458 chr15 101203860 101204530 + 0 NA intron (ENSMUSG00000000532.11, intron 6 of 8) protein_coding-intron (ENSMUSG00000000532.11, intron 6 of 8) 10326 ENSMUSG00000106563.1 ENSMUSG00000106563 ENSMUST00000199512 Mir6962 miRNA Interval_185 JH792828.1 222567 222919 + 0 NA NA NA NA NA Interval_64821 chr16 16161760 16163281 + 0 NA Intergenic Intergenic -15716 ENSMUSG00000041974.10 ENSMUSG00000041974 ENSMUST00000229846 Spidr protein_coding Interval_49991 chr13 119388859 119389592 + 0 NA exon (ENSMUSG00000025453.18, exon 5 of 15) protein_coding-exon (ENSMUSG00000025453.18, exon 5 of 15) 19727 ENSMUSG00000116207.1 ENSMUSG00000116207 ENSMUST00000223268 Nnt protein_coding Interval_144648 chr7 27329490 27329753 + 0 NA exon (ENSMUSG00000040488.18, exon 6 of 33) protein_coding-exon (ENSMUSG00000040488.18, exon 6 of 33) 4027 ENSMUSG00000040488.18 ENSMUSG00000040488 ENSMUST00000206413 Ltbp4 protein_coding Interval_135636 chr6 42121230 42121575 + 0 NA Intergenic Intergenic -14935 ENSMUSG00000107543.1 ENSMUSG00000107543 ENSMUST00000204685 Gm34701 transcribed_processed_pseudogene Interval_121727 chr5 5778926 5779468 + 0 NA Intergenic Intergenic 4358 ENSMUSG00000100801.1 ENSMUSG00000100801 ENSMUST00000117405 Gm15459 processed_pseudogene Interval_9606 chr1 160165208 160166882 + 0 NA Intergenic Intergenic -18157 ENSMUSG00000026725.17 ENSMUSG00000026725 ENSMUST00000131919 Tnn protein_coding Interval_145092 chr7 29980920 29984355 + 0 NA Intergenic Intergenic -2619 ENSMUSG00000074221.12 ENSMUSG00000074221 ENSMUST00000177931 Zfp568 protein_coding Interval_74777 chr17 56487753 56488652 + 0 NA Intergenic Intergenic 24229 ENSMUSG00000044526.3 ENSMUSG00000044526 ENSMUST00000052211 Znrf4 protein_coding Interval_139537 chr6 100865452 100866460 + 0 NA promoter-TSS (ENSMUSG00000052144.8) protein_coding-promoter-TSS (ENSMUSG00000052144.8) 13471 ENSMUSG00000052144.8 ENSMUSG00000052144 ENSMUST00000203067 Ppp4r2 protein_coding Interval_50709 chr14 18416679 18417507 + 0 NA Intergenic Intergenic -28782 ENSMUSG00000065858.1 ENSMUSG00000065858 ENSMUST00000083924 Gm22350 snRNA Interval_19424 chr10 99132042 99133385 + 0 NA intron (ENSMUSG00000019952.15, intron 4 of 12) protein_coding-intron (ENSMUSG00000019952.15, intron 4 of 11) -6388 ENSMUSG00000055108.6 ENSMUSG00000055108 ENSMUST00000060761 Phxr2 protein_coding Interval_142029 chr6 136620208 136621262 + 0 NA exon (ENSMUSG00000107760.1, exon 1 of 1) TEC-exon (ENSMUSG00000107760.1, exon 1 of 1) 103 ENSMUSG00000107760.1 ENSMUSG00000107760 ENSMUST00000204462 Gm44401 TEC Interval_42708 chr13 18332353 18332704 + 0 NA intron (ENSMUSG00000009734.18, intron 2 of 5) protein_coding-intron (ENSMUSG00000009734.18, intron 2 of 7) 65158 ENSMUSG00000009734.18 ENSMUSG00000009734 ENSMUST00000222900 Pou6f2 protein_coding Interval_66592 chr16 35472380 35472806 + 0 NA exon (ENSMUSG00000022844.8, exon 4 of 9) protein_coding-exon (ENSMUSG00000022844.8, exon 4 of 9) -32230 ENSMUSG00000095160.1 ENSMUSG00000095160 ENSMUST00000178681 Gm25548 miRNA Interval_69455 chr16 93580758 93581392 + 0 NA Intergenic Intergenic 5556 ENSMUSG00000022948.16 ENSMUSG00000022948 ENSMUST00000156298 Setd4 protein_coding Interval_47686 chr13 91239604 91239952 + 0 NA Intergenic Intergenic -15819 ENSMUSG00000021619.6 ENSMUSG00000021619 ENSMUST00000223729 Atg10 protein_coding Interval_84995 chr19 21058099 21058671 + 0 NA Intergenic Intergenic -46325 ENSMUSG00000118047.1 ENSMUSG00000118047 ENSMUST00000237768 4930554I06Rik lincRNA Interval_89257 chr2 18545815 18546383 + 0 NA Intergenic Intergenic -22027 ENSMUSG00000081181.1 ENSMUSG00000081181 ENSMUST00000120891 Gm13353 processed_pseudogene Interval_104392 chr3 65175977 65176226 + 0 NA intron (ENSMUSG00000104093.1, intron 3 of 4) protein_coding-intron (ENSMUSG00000027827.17, intron 1 of 13) 126584 ENSMUSG00000104093.1 ENSMUSG00000104093 ENSMUST00000195489 A330015K06Rik antisense Interval_80347 chr18 39736460 39736744 + 0 NA Intergenic Intergenic -1643 ENSMUSG00000117922.1 ENSMUSG00000117922 ENSMUST00000235128 Gm50397 lincRNA Interval_127528 chr5 104839743 104840031 + 0 NA intron (ENSMUSG00000072774.10, intron 1 of 1) protein_coding-intron (ENSMUSG00000072774.10, intron 1 of 4) 19906 ENSMUSG00000072774.10 ENSMUSG00000072774 ENSMUST00000191135 Zfp951 protein_coding Interval_55619 chr14 96194924 96195209 + 0 NA intron (ENSMUSG00000022076.10, intron 7 of 10) protein_coding-intron (ENSMUSG00000022076.10, intron 7 of 10) -36887 ENSMUSG00000083933.1 ENSMUSG00000083933 ENSMUST00000117827 Gm15515 processed_pseudogene Interval_115437 chr4 98932687 98932954 + 0 NA intron (ENSMUSG00000028560.11, intron 7 of 8) protein_coding-intron (ENSMUSG00000028560.11, intron 7 of 8) 8856 ENSMUSG00000028560.11 ENSMUSG00000028560 ENSMUST00000125104 Usp1 protein_coding Interval_109369 chr3 140512314 140513132 + 0 NA Intergenic Intergenic -5456 ENSMUSG00000104596.1 ENSMUSG00000104596 ENSMUST00000196082 Gm19080 processed_pseudogene Interval_127547 chr5 105093083 105094001 + 0 NA intron (ENSMUSG00000029298.15, intron 5 of 9) protein_coding-intron (ENSMUSG00000034438.16, intron 1 of 9) -10779 ENSMUSG00000029298.15 ENSMUSG00000029298 ENSMUST00000199453 Gbp9 protein_coding Interval_7390 chr1 130826056 130826952 + 0 NA promoter-TSS (ENSMUSG00000026417.13) protein_coding-promoter-TSS (ENSMUSG00000026417.13) -2506 ENSMUSG00000026417.13 ENSMUSG00000026417 ENSMUST00000137782 Pigr protein_coding Interval_28125 chr11 73006377 73008322 + 0 NA intron (ENSMUSG00000020787.14, intron 1 of 10) protein_coding-intron (ENSMUSG00000020787.14, intron 1 of 11) -2442 ENSMUSG00000020787.14 ENSMUSG00000020787 ENSMUST00000148964 P2rx1 protein_coding Interval_13969 chr10 25180450 25180770 + 0 NA intron (ENSMUSG00000039166.16, intron 2 of 2) protein_coding-intron (ENSMUSG00000039166.16, intron 7 of 7) 40081 ENSMUSG00000039166.16 ENSMUSG00000039166 ENSMUST00000176231 Akap7 protein_coding Interval_71706 chr17 25583884 25584100 + 0 NA intron (ENSMUSG00000002279.19, intron 1 of 8) protein_coding-intron (ENSMUSG00000002279.19, intron 1 of 10) 4672 ENSMUSG00000002279.19 ENSMUSG00000002279 ENSMUST00000156868 Lmf1 protein_coding Interval_88332 chr2 3886682 3887342 + 0 NA Intergenic Intergenic 31982 ENSMUSG00000085656.1 ENSMUSG00000085656 ENSMUST00000141222 Gm13180 lincRNA Interval_81800 chr18 64874265 64876759 + 0 NA Intergenic Intergenic 12979 ENSMUSG00000114210.2 ENSMUSG00000114210 ENSMUST00000224731 A330084C13Rik antisense Interval_28340 chr11 75287952 75288267 + 0 NA Intergenic Intergenic 30499 ENSMUSG00000106179.1 ENSMUSG00000106179 ENSMUST00000198372 Gm47300 miRNA Interval_173346 chrX 82660815 82661020 + 0 NA Intergenic Intergenic 26905 ENSMUSG00000082913.1 ENSMUSG00000082913 ENSMUST00000120424 Gm14739 processed_pseudogene Interval_50922 chr14 20775693 20776145 + 0 NA intron (ENSMUSG00000021820.18, intron 3 of 21) protein_coding-intron (ENSMUSG00000021820.18, intron 3 of 20) 18047 ENSMUSG00000021820.18 ENSMUSG00000021820 ENSMUST00000225635 Camk2g protein_coding Interval_144006 chr7 18921011 18921498 + 0 NA Intergenic Intergenic -4634 ENSMUSG00000030411.16 ENSMUSG00000030411 ENSMUST00000220302 Nova2 protein_coding Interval_88433 chr2 5031795 5033572 + 0 NA intron (ENSMUSG00000026672.11, intron 5 of 8) protein_coding-intron (ENSMUSG00000026672.11, intron 10 of 14) 4514 ENSMUSG00000026672.11 ENSMUSG00000026672 ENSMUST00000143809 Optn protein_coding Interval_38934 chr12 83934262 83934836 + 0 NA Intergenic Intergenic -12816 ENSMUSG00000021224.15 ENSMUSG00000021224 ENSMUST00000222439 Numb protein_coding Interval_33670 chr11 117838375 117839070 + 0 NA exon (ENSMUSG00000017718.15, exon 11 of 11) protein_coding-exon (ENSMUSG00000017718.15, exon 11 of 11) -10597 ENSMUSG00000017716.15 ENSMUSG00000017716 ENSMUST00000093906 Birc5 protein_coding Interval_145505 chr7 35266888 35268152 + 0 NA intron (ENSMUSG00000118454.1, intron 1 of 9) protein_coding-intron (ENSMUSG00000118454.1, intron 1 of 9) 8013 ENSMUSG00000118454.1 ENSMUSG00000118454 ENSMUST00000238407 Wdr88 protein_coding Interval_3472 chr1 58671977 58672441 + 0 NA intron (ENSMUSG00000047528.13, intron 6 of 13) protein_coding-intron (ENSMUSG00000047528.13, intron 7 of 14) 17264 ENSMUSG00000102059.1 ENSMUSG00000102059 ENSMUST00000188643 Gm20257 transcribed_unprocessed_pseudogene Interval_134429 chr6 28586717 28587103 + 0 NA intron (ENSMUSG00000001424.14, intron 1 of 4) protein_coding-intron (ENSMUSG00000001424.14, intron 10 of 23) 18838 ENSMUSG00000103132.1 ENSMUSG00000103132 ENSMUST00000194736 Gm37978 TEC Interval_4296 chr1 72505801 72506303 + 0 NA intron (ENSMUSG00000039372.5, intron 1 of 3) protein_coding-intron (ENSMUSG00000039372.5, intron 1 of 3) 30878 ENSMUSG00000039372.5 ENSMUSG00000039372 ENSMUST00000047786 Marchf4 protein_coding Interval_4117 chr1 69241624 69242305 + 0 NA Intergenic Intergenic -110665 ENSMUSG00000084332.1 ENSMUSG00000084332 ENSMUST00000122454 Gm8840 processed_pseudogene Interval_38372 chr12 77969208 77970421 + 0 NA Intergenic Intergenic 150232 ENSMUSG00000112551.1 ENSMUSG00000112551 ENSMUST00000218309 Gm8219 processed_pseudogene Interval_159747 chr8 100646055 100646238 + 0 NA Intergenic Intergenic 9627 ENSMUSG00000110014.1 ENSMUSG00000110014 ENSMUST00000211041 Gm5361 processed_pseudogene Interval_74110 chr17 46594357 46595183 + 0 NA intron (ENSMUSG00000023972.10, intron 1 of 19) protein_coding-intron (ENSMUSG00000023972.10, intron 1 of 19) -21820 ENSMUSG00000023972.10 ENSMUSG00000023972 ENSMUST00000044442 Ptk7 protein_coding Interval_65839 chr16 29719473 29720715 + 0 NA Intergenic Intergenic 34218 ENSMUSG00000116814.1 ENSMUSG00000116814 ENSMUST00000232037 Gm49636 lincRNA Interval_11856 chr1 186393092 186393454 + 0 NA Intergenic Intergenic 45958 ENSMUSG00000102217.1 ENSMUSG00000102217 ENSMUST00000192552 Gm37491 TEC Interval_99808 chr2 165050810 165051495 + 0 NA Intergenic Intergenic -4552 ENSMUSG00000017652.16 ENSMUSG00000017652 ENSMUST00000153105 Cd40 protein_coding Interval_28733 chr11 77975619 77976500 + 0 NA intron (ENSMUSG00000000632.13, intron 10 of 15) protein_coding-intron (ENSMUSG00000000632.13, intron 11 of 15) 45020 ENSMUSG00000000632.13 ENSMUSG00000000632 ENSMUST00000126866 Sez6 protein_coding Interval_84726 chr19 15964872 15965563 + 0 NA intron (ENSMUSG00000041491.8, intron 10 of 13) protein_coding-intron (ENSMUSG00000041491.8, intron 11 of 14) -17880 ENSMUSG00000024640.9 ENSMUSG00000024640 ENSMUST00000162233 Psat1 protein_coding Interval_67060 chr16 42320891 42321450 + 0 NA intron (ENSMUSG00000047261.9, intron 1 of 2) protein_coding-intron (ENSMUSG00000047261.9, intron 1 of 2) -17701 ENSMUSG00000098300.1 ENSMUSG00000098300 ENSMUST00000184886 Mir6540 miRNA Interval_111624 chr4 24785492 24785839 + 0 NA intron (ENSMUSG00000040387.16, intron 3 of 8) protein_coding-intron (ENSMUSG00000040387.16, intron 3 of 9) -7015 ENSMUSG00000087399.1 ENSMUSG00000087399 ENSMUST00000142373 Gm11899 antisense Interval_139572 chr6 101367246 101367474 + 0 NA intron (ENSMUSG00000035357.17, intron 1 of 3) protein_coding-intron (ENSMUSG00000035357.17, intron 1 of 9) -18530 ENSMUSG00000107720.1 ENSMUSG00000107720 ENSMUST00000204058 Gm43946 TEC Interval_1673 chr1 30930742 30931467 + 0 NA Intergenic Intergenic 18205 ENSMUSG00000026064.16 ENSMUSG00000026064 ENSMUST00000130934 Ptp4a1 protein_coding Interval_136879 chr6 62565471 62565928 + 0 NA Intergenic Intergenic -16371 ENSMUSG00000108160.1 ENSMUSG00000108160 ENSMUST00000205036 Gm19237 processed_pseudogene Interval_141469 chr6 128452361 128452974 + 0 NA intron (ENSMUSG00000059659.7, intron 2 of 4) antisense-intron (ENSMUSG00000059659.7, intron 2 of 2) -4269 ENSMUSG00000107505.1 ENSMUSG00000107505 ENSMUST00000203239 Stambp-ps1 processed_pseudogene Interval_20042 chr10 112454210 112454567 + 0 NA intron (ENSMUSG00000035681.7, intron 2 of 4) protein_coding-intron (ENSMUSG00000035681.7, intron 2 of 4) -1868 ENSMUSG00000035681.7 ENSMUSG00000035681 ENSMUST00000218827 Kcnc2 protein_coding Interval_164960 chr9 43433771 43433961 + 0 NA Intergenic Intergenic 10572 ENSMUSG00000111829.1 ENSMUSG00000111829 ENSMUST00000216533 Gm47475 lincRNA Interval_22505 chr11 11221306 11221751 + 0 NA intron (ENSMUSG00000050830.17, intron 3 of 4) protein_coding-intron (ENSMUSG00000050830.17, intron 2 of 3) 81014 ENSMUSG00000088861.1 ENSMUSG00000088861 ENSMUST00000158236 Gm23065 rRNA Interval_155630 chr8 35375223 35377054 + 0 NA promoter-TSS (ENSMUSG00000046794.9) protein_coding-promoter-TSS (ENSMUSG00000046794.9) 254 ENSMUSG00000109698.1 ENSMUSG00000109698 ENSMUST00000210468 Gm45469 bidirectional_promoter_lncRNA Interval_37531 chr12 69631271 69631775 + 0 NA intron (ENSMUSG00000034801.13, intron 7 of 22) protein_coding-intron (ENSMUSG00000034801.13, intron 7 of 22) -14404 ENSMUSG00000034801.13 ENSMUSG00000034801 ENSMUST00000183306 Sos2 protein_coding Interval_61723 chr15 83586727 83587115 + 0 NA promoter-TSS (ENSMUSG00000016757.11) protein_coding-promoter-TSS (ENSMUSG00000016757.11) 8236 ENSMUSG00000016757.11 ENSMUSG00000016757 ENSMUST00000134334 Ttll12 protein_coding Interval_17416 chr10 76468577 76469476 + 0 NA promoter-TSS (ENSMUSG00000033126.5) protein_coding-promoter-TSS (ENSMUSG00000033126.5) -163 ENSMUSG00000033126.5 ENSMUSG00000033126 ENSMUST00000218564 Ybey protein_coding Interval_19840 chr10 110152491 110152732 + 0 NA intron (ENSMUSG00000020181.18, intron 3 of 40) protein_coding-intron (ENSMUSG00000020181.18, intron 3 of 4) -12442 ENSMUSG00000112595.1 ENSMUSG00000112595 ENSMUST00000218767 Gm47340 processed_pseudogene Interval_111271 chr4 16408168 16408720 + 0 NA Intergenic Intergenic -16780 ENSMUSG00000080065.2 ENSMUSG00000080065 ENSMUST00000116179 Gm11864 processed_pseudogene Interval_123447 chr5 32626505 32627733 + 0 NA intron (ENSMUSG00000014932.15, intron 1 of 11) protein_coding-intron (ENSMUSG00000014932.15, intron 1 of 11) -2723 ENSMUSG00000107018.1 ENSMUSG00000107018 ENSMUST00000200773 Gm43694 TEC Interval_133769 chr6 11944428 11944634 + 0 NA intron (ENSMUSG00000029629.17, intron 3 of 3) protein_coding-intron (ENSMUSG00000029629.17, intron 4 of 15) -37048 ENSMUSG00000029632.7 ENSMUSG00000029632 ENSMUST00000204714 Ndufa4 protein_coding Interval_174770 chrX 166416209 166416967 + 0 NA intron (ENSMUSG00000040586.8, intron 9 of 22) protein_coding-intron (ENSMUSG00000040586.8, intron 9 of 22) 24116 ENSMUSG00000040586.8 ENSMUSG00000040586 ENSMUST00000049501 Ofd1 protein_coding Interval_121770 chr5 7732342 7733276 + 0 NA intron (ENSMUSG00000105068.1, intron 3 of 5) lincRNA-intron (ENSMUSG00000105068.1, intron 3 of 5) -124299 ENSMUSG00000081226.1 ENSMUSG00000081226 ENSMUST00000118633 Gm8802 processed_pseudogene Interval_100638 chr2 170653638 170653917 + 0 NA intron (ENSMUSG00000085158.1, intron 2 of 2) lincRNA-intron (ENSMUSG00000085158.1, intron 2 of 2) 8688 ENSMUSG00000085158.1 ENSMUSG00000085158 ENSMUST00000147141 Gm14264 lincRNA Interval_103427 chr3 41487458 41488134 + 0 NA exon (ENSMUSG00000097639.2, exon 2 of 2) lincRNA-exon (ENSMUSG00000097639.2, exon 2 of 2) 2063 ENSMUSG00000104616.1 ENSMUSG00000104616 ENSMUST00000196501 Gm6069 processed_pseudogene Interval_93895 chr2 78266364 78267050 + 0 NA intron (ENSMUSG00000054510.5, intron 3 of 5) lincRNA-intron (ENSMUSG00000054510.5, intron 3 of 5) -34985 ENSMUSG00000054510.5 ENSMUSG00000054510 ENSMUST00000166653 Gm14461 lincRNA Interval_13665 chr10 20813145 20813357 + 0 NA intron (ENSMUSG00000111091.1, intron 3 of 4) lincRNA-intron (ENSMUSG00000111091.1, intron 3 of 4) 57134 ENSMUSG00000111091.1 ENSMUSG00000111091 ENSMUST00000213510 Gm48651 lincRNA Interval_68581 chr16 79196673 79197432 + 0 NA Intergenic Intergenic -105955 ENSMUSG00000022857.13 ENSMUSG00000022857 ENSMUST00000060402 Tmprss15 protein_coding Interval_96786 chr2 128249095 128249369 + 0 NA intron (ENSMUSG00000074813.14, intron 2 of 3) lincRNA-intron (ENSMUSG00000074813.14, intron 2 of 4) 59245 ENSMUSG00000085750.1 ENSMUSG00000085750 ENSMUST00000152439 Gm14009 lincRNA Interval_71832 chr17 26396124 26396377 + 0 NA Intergenic Intergenic -18579 ENSMUSG00000034413.14 ENSMUSG00000034413 ENSMUST00000053020 Neurl1b protein_coding Interval_92098 chr2 53180726 53181542 + 0 NA intron (ENSMUSG00000061136.16, intron 2 of 25) protein_coding-intron (ENSMUSG00000061136.16, intron 2 of 25) 10053 ENSMUSG00000061136.16 ENSMUSG00000061136 ENSMUST00000132031 Prpf40a protein_coding Interval_96380 chr2 122065009 122066434 + 0 NA intron (ENSMUSG00000033396.13, intron 29 of 39) protein_coding-intron (ENSMUSG00000033396.13, intron 29 of 39) 37069 ENSMUSG00000027236.8 ENSMUSG00000027236 ENSMUST00000142747 Eif3j1 protein_coding Interval_147113 chr7 63330134 63330397 + 0 NA Intergenic Intergenic 114264 ENSMUSG00000097682.1 ENSMUSG00000097682 ENSMUST00000181327 4930554H23Rik lincRNA Interval_39040 chr12 84614063 84614443 + 0 NA intron (ENSMUSG00000021240.6, intron 3 of 17) protein_coding-intron (ENSMUSG00000021240.6, intron 3 of 18) 3160 ENSMUSG00000021240.6 ENSMUSG00000021240 ENSMUST00000221070 Abcd4 protein_coding Interval_104676 chr3 69333567 69333971 + 0 NA intron (ENSMUSG00000027784.10, intron 1 of 3) protein_coding-intron (ENSMUSG00000027784.10, intron 1 of 3) 1991 ENSMUSG00000090941.1 ENSMUSG00000090941 ENSMUST00000166666 Gm17212 processed_pseudogene Interval_13632 chr10 20296100 20296639 + 0 NA Intergenic Intergenic 1319 ENSMUSG00000098887.1 ENSMUSG00000098887 ENSMUST00000184049 Mir6413 miRNA Interval_63430 chr15 101039411 101040538 + 0 NA exon (ENSMUSG00000023033.14, exon 27 of 27) protein_coding-exon (ENSMUSG00000023033.14, exon 27 of 27) 7423 ENSMUSG00000113558.1 ENSMUSG00000113558 ENSMUST00000222611 Tmdd1 protein_coding Interval_56923 chr14 123519031 123519914 + 0 NA intron (ENSMUSG00000000197.8, intron 7 of 10) protein_coding-intron (ENSMUSG00000000197.8, intron 7 of 43) 107672 ENSMUSG00000000197.8 ENSMUSG00000000197 ENSMUST00000228766 Nalcn protein_coding Interval_169407 chr9 97018016 97019458 + 0 NA promoter-TSS (ENSMUSG00000046997.5) protein_coding-promoter-TSS (ENSMUSG00000046997.5) 2771 ENSMUSG00000085541.1 ENSMUSG00000085541 ENSMUST00000124366 Gm16010 antisense Interval_58039 chr15 27127632 27128208 + 0 NA Intergenic Intergenic -66054 ENSMUSG00000088191.1 ENSMUSG00000088191 ENSMUST00000157566 Gm23903 snoRNA Interval_32169 chr11 105909183 105910236 + 0 NA intron (ENSMUSG00000053580.16, intron 2 of 4) protein_coding-intron (ENSMUSG00000053580.16, intron 3 of 8) 33804 ENSMUSG00000081270.1 ENSMUSG00000081270 ENSMUST00000119992 Gm11653 processed_pseudogene Interval_145838 chr7 39971313 39972373 + 0 NA intron (ENSMUSG00000109083.2, intron 1 of 7) lincRNA-intron (ENSMUSG00000109083.2, intron 1 of 4) 6390 ENSMUSG00000109083.2 ENSMUSG00000109083 ENSMUST00000208803 Gm44992 lincRNA Interval_112855 chr4 45545895 45546123 + 0 NA Intergenic Intergenic -2734 ENSMUSG00000065322.1 ENSMUSG00000065322 ENSMUST00000083388 Gm22055 snRNA Interval_153113 chr7 141437076 141437978 + 0 NA promoter-TSS (ENSMUSG00000019082.18) protein_coding-promoter-TSS (ENSMUSG00000019082.18) -2927 ENSMUSG00000019082.18 ENSMUSG00000019082 ENSMUST00000150026 Slc25a22 protein_coding Interval_29119 chr11 80441166 80441941 + 0 NA intron (ENSMUSG00000017428.16, intron 4 of 6) protein_coding-intron (ENSMUSG00000017428.16, intron 3 of 13) 12867 ENSMUSG00000017428.16 ENSMUSG00000017428 ENSMUST00000125591 Psmd11 protein_coding Interval_33210 chr11 115245195 115245926 + 0 NA exon (ENSMUSG00000045980.13, exon 10 of 10) protein_coding-exon (ENSMUSG00000045980.13, exon 10 of 10) -7718 ENSMUSG00000089544.1 ENSMUSG00000089544 ENSMUST00000158919 Gm25837 miRNA Interval_135492 chr6 39616906 39617238 + 0 NA intron (ENSMUSG00000002413.15, intron 16 of 17) protein_coding-intron (ENSMUSG00000002413.15, intron 19 of 21) -24288 ENSMUSG00000086582.1 ENSMUSG00000086582 ENSMUST00000128218 Gm16272 antisense Interval_43473 chr13 31670606 31672293 + 0 NA Intergenic Intergenic -44906 ENSMUSG00000098266.1 ENSMUSG00000098266 ENSMUST00000184237 Gm27516 miRNA Interval_152373 chr7 132534478 132534715 + 0 NA intron (ENSMUSG00000030849.18, intron 2 of 6) protein_coding-intron (ENSMUSG00000030849.18, intron 2 of 6) 41122 ENSMUSG00000030934.9 ENSMUSG00000030934 ENSMUST00000211545 Oat protein_coding Interval_159934 chr8 105268247 105270213 + 0 NA promoter-TSS (ENSMUSG00000033249.10) protein_coding-promoter-TSS (ENSMUSG00000033249.10) -644 ENSMUSG00000033249.10 ENSMUSG00000033249 ENSMUST00000173859 Hsf4 protein_coding Interval_7985 chr1 135062795 135063651 + 0 NA intron (ENSMUSG00000042793.13, intron 4 of 17) protein_coding-intron (ENSMUSG00000042793.13, intron 4 of 17) -41132 ENSMUSG00000042793.13 ENSMUSG00000042793 ENSMUST00000139369 Lgr6 protein_coding Interval_30210 chr11 90646238 90646616 + 0 NA intron (ENSMUSG00000020541.12, intron 2 of 2) protein_coding-intron (ENSMUSG00000020541.12, intron 15 of 15) 6249 ENSMUSG00000020544.14 ENSMUSG00000020544 ENSMUST00000099960 Cox11 protein_coding Interval_92525 chr2 60298044 60299002 + 0 NA intron (ENSMUSG00000026980.15, intron 34 of 34) protein_coding-intron (ENSMUSG00000026980.15, intron 34 of 34) -14035 ENSMUSG00000060703.12 ENSMUSG00000060703 ENSMUST00000074606 Cd302 protein_coding Interval_9557 chr1 159389762 159390808 + 0 NA Intergenic Intergenic 11881 ENSMUSG00000103289.1 ENSMUSG00000103289 ENSMUST00000194705 Gm31256 processed_pseudogene Interval_8558 chr1 142152606 142153233 + 0 NA Intergenic Intergenic 302895 ENSMUSG00000099671.2 ENSMUSG00000099671 ENSMUST00000191024 Gm18183 processed_pseudogene Interval_26665 chr11 59555291 59556134 + 0 NA intron (ENSMUSG00000032691.14, intron 5 of 9) protein_coding-intron (ENSMUSG00000032691.14, intron 6 of 10) 12956 ENSMUSG00000032691.14 ENSMUSG00000032691 ENSMUST00000149126 Nlrp3 protein_coding Interval_9654 chr1 160758035 160759121 + 0 NA exon (ENSMUSG00000104053.1, exon 1 of 1) TEC-exon (ENSMUSG00000104053.1, exon 1 of 1) 2891 ENSMUSG00000104053.1 ENSMUSG00000104053 ENSMUST00000195297 Gm38126 TEC Interval_70437 chr17 10228284 10228576 + 0 NA intron (ENSMUSG00000062078.15, intron 4 of 6) protein_coding-intron (ENSMUSG00000062078.15, intron 4 of 6) 90931 ENSMUSG00000062078.15 ENSMUSG00000062078 ENSMUST00000233684 Qk protein_coding Interval_137689 chr6 79400953 79401426 + 0 NA Intergenic Intergenic -140019 ENSMUSG00000107618.1 ENSMUSG00000107618 ENSMUST00000204707 Gm6261 processed_pseudogene Interval_115971 chr4 106684325 106684531 + 0 NA intron (ENSMUSG00000047502.14, intron 12 of 14) protein_coding-intron (ENSMUSG00000047502.14, intron 21 of 23) -5742 ENSMUSG00000025413.13 ENSMUSG00000025413 ENSMUST00000132572 Ttc4 protein_coding Interval_113462 chr4 55141001 55142800 + 0 NA intron (ENSMUSG00000087614.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000087614.1, intron 1 of 2) -21108 ENSMUSG00000081177.1 ENSMUSG00000081177 ENSMUST00000118033 Gm12509 processed_pseudogene Interval_135864 chr6 48024285 48026531 + 0 NA exon (ENSMUSG00000071477.10, exon 6 of 6) protein_coding-exon (ENSMUSG00000071477.10, exon 6 of 6) 18835 ENSMUSG00000071477.10 ENSMUSG00000071477 ENSMUST00000125385 Zfp777 protein_coding Interval_40798 chr12 108487790 108488292 + 0 NA intron (ENSMUSG00000058070.14, intron 1 of 18) protein_coding-intron (ENSMUSG00000058070.14, intron 3 of 21) 16188 ENSMUSG00000058070.14 ENSMUSG00000058070 ENSMUST00000123035 Eml1 protein_coding Interval_120927 chr4 151694200 151694473 + 0 NA intron (ENSMUSG00000014592.21, intron 2 of 7) protein_coding-intron (ENSMUSG00000014592.21, intron 3 of 23) 167368 ENSMUSG00000014592.21 ENSMUSG00000014592 ENSMUST00000135780 Camta1 protein_coding Interval_59829 chr15 59599539 59600034 + 0 NA intron (ENSMUSG00000059586.10, intron 7 of 7) protein_coding-intron (ENSMUSG00000059586.10, intron 6 of 6) -18804 ENSMUSG00000115896.1 ENSMUSG00000115896 ENSMUST00000229684 Gm36677 lincRNA Interval_65805 chr16 28979086 28980055 + 0 NA Intergenic Intergenic -28215 ENSMUSG00000116861.1 ENSMUSG00000116861 ENSMUST00000232466 Gm8253 processed_pseudogene Interval_101882 chr3 10361641 10362570 + 0 NA Intergenic Intergenic -4853 ENSMUSG00000027536.6 ENSMUSG00000027536 ENSMUST00000191826 Chmp4c protein_coding Interval_172874 chrX 52644452 52644981 + 0 NA Intergenic Intergenic -30766 ENSMUSG00000055653.13 ENSMUSG00000055653 ENSMUST00000114857 Gpc3 protein_coding Interval_78196 chr18 10062207 10062832 + 0 NA Intergenic Intergenic -17414 ENSMUSG00000047879.17 ENSMUSG00000047879 ENSMUST00000150321 Usp14 protein_coding Interval_40864 chr12 108958653 108960550 + 0 NA intron (ENSMUSG00000040877.16, intron 1 of 2) protein_coding-intron (ENSMUSG00000040877.16, intron 3 of 7) -1311 ENSMUSG00000113966.1 ENSMUSG00000113966 ENSMUST00000222257 Gm47980 TEC Interval_120458 chr4 148746679 148747137 + 0 NA Intergenic Intergenic 33205 ENSMUSG00000087273.1 ENSMUSG00000087273 ENSMUST00000139895 Gm13203 lincRNA Interval_114738 chr4 84634914 84635110 + 0 NA intron (ENSMUSG00000028487.18, intron 1 of 5) protein_coding-intron (ENSMUSG00000028487.18, intron 1 of 7) -62851 ENSMUSG00000081775.1 ENSMUSG00000081775 ENSMUST00000119869 Gm12420 processed_pseudogene Interval_153338 chr7 143748136 143748842 + 0 NA intron (ENSMUSG00000037606.18, intron 1 of 5) protein_coding-intron (ENSMUSG00000037606.18, intron 1 of 5) -8190 ENSMUSG00000037606.18 ENSMUSG00000037606 ENSMUST00000153864 Osbpl5 protein_coding Interval_89240 chr2 18324371 18324882 + 0 NA intron (ENSMUSG00000026740.12, intron 1 of 11) protein_coding-intron (ENSMUSG00000026740.12, intron 1 of 10) 14363 ENSMUSG00000082520.2 ENSMUSG00000082520 ENSMUST00000118436 Gm13349 processed_pseudogene Interval_62541 chr15 94520374 94521287 + 0 NA Intergenic Intergenic 22663 ENSMUSG00000033356.3 ENSMUSG00000033356 ENSMUST00000134061 Pus7l protein_coding Interval_121988 chr5 13057569 13057826 + 0 NA Intergenic Intergenic -14263 ENSMUSG00000096810.1 ENSMUSG00000096810 ENSMUST00000179228 Gm10481 processed_pseudogene Interval_45947 chr13 59556651 59557776 + 0 NA promoter-TSS (ENSMUSG00000021557.15) protein_coding-promoter-TSS (ENSMUSG00000021557.15) -353 ENSMUSG00000114526.1 ENSMUSG00000114526 ENSMUST00000225984 A930015P04Rik TEC Interval_146743 chr7 49857431 49859465 + 0 NA TTS (ENSMUSG00000030505.17) protein_coding-TTS (ENSMUSG00000030505.17) 44246 ENSMUSG00000109154.1 ENSMUSG00000109154 ENSMUST00000208559 Gm44822 TEC Interval_106842 chr3 101256793 101257560 + 0 NA Intergenic Intergenic -3741 ENSMUSG00000081569.1 ENSMUSG00000081569 ENSMUST00000120255 Gm12490 processed_pseudogene Interval_13921 chr10 24639621 24640030 + 0 NA exon (ENSMUSG00000037370.13, exon 25 of 25) protein_coding-exon (ENSMUSG00000037370.13, exon 25 of 25) 44099 ENSMUSG00000019997.11 ENSMUSG00000019997 ENSMUST00000129142 Ccn2 protein_coding Interval_42294 chr13 11874484 11875137 + 0 NA intron (ENSMUSG00000021313.16, intron 7 of 24) protein_coding-intron (ENSMUSG00000021313.16, intron 8 of 104) -53076 ENSMUSG00000113269.1 ENSMUSG00000113269 ENSMUST00000221204 Gm47494 TEC Interval_83730 chr19 3999965 4001184 + 0 NA promoter-TSS (ENSMUSG00000110949.1) protein_coding-promoter-TSS (ENSMUSG00000110949.1) -32 ENSMUSG00000118132.1 ENSMUSG00000118132 ENSMUST00000235840 4833408A19Rik bidirectional_promoter_lncRNA Interval_33135 chr11 114667424 114669822 + 0 NA promoter-TSS (ENSMUSG00000057322.12) protein_coding-promoter-TSS (ENSMUSG00000057322.12) 99 ENSMUSG00000057322.12 ENSMUSG00000057322 ENSMUST00000082092 Rpl38 protein_coding Interval_154575 chr8 20993726 20994612 + 0 NA Intergenic Intergenic -31376 ENSMUSG00000074447.2 ENSMUSG00000074447 ENSMUST00000076754 Defa21 protein_coding Interval_98579 chr2 153370402 153371592 + 0 NA intron (ENSMUSG00000042548.14, intron 3 of 11) protein_coding-intron (ENSMUSG00000042548.14, intron 4 of 12) -24924 ENSMUSG00000073236.4 ENSMUSG00000073236 ENSMUST00000139636 2500004C02Rik processed_transcript Interval_112012 chr4 33230523 33231375 + 0 NA exon (ENSMUSG00000054679.8, exon 3 of 3) protein_coding-exon (ENSMUSG00000054679.8, exon 3 of 3) 16626 ENSMUSG00000040128.9 ENSMUSG00000040128 ENSMUST00000137589 Pnrc1 protein_coding Interval_149091 chr7 93093646 93093949 + 0 NA intron (ENSMUSG00000097644.1, intron 3 of 3) sense_overlapping-intron (ENSMUSG00000097644.1, intron 3 of 3) -13003 ENSMUSG00000054061.8 ENSMUSG00000054061 ENSMUST00000191246 Gm9934 antisense Interval_132355 chr5 144415296 144415710 + 0 NA intron (ENSMUSG00000047843.16, intron 3 of 3) protein_coding-intron (ENSMUSG00000047843.16, intron 3 of 3) 8901 ENSMUSG00000083574.1 ENSMUSG00000083574 ENSMUST00000118354 Gm15709 processed_pseudogene Interval_85381 chr19 25347552 25348304 + 0 NA promoter-TSS (ENSMUSG00000118238.1) processed_pseudogene-promoter-TSS (ENSMUSG00000118238.1) -725 ENSMUSG00000118238.1 ENSMUSG00000118238 ENSMUST00000235913 Gm34432 processed_pseudogene Interval_82472 chr18 74294581 74295549 + 0 NA exon (ENSMUSG00000035394.11, exon 1 of 3) protein_coding-exon (ENSMUSG00000035394.11, exon 1 of 3) 8866 ENSMUSG00000095419.1 ENSMUSG00000095419 ENSMUST00000122178 Gm14328 processed_pseudogene Interval_55435 chr14 87242384 87242793 + 0 NA Intergenic Intergenic -42514 ENSMUSG00000102284.1 ENSMUSG00000102284 ENSMUST00000194560 Gm37002 TEC Interval_138749 chr6 91625665 91626578 + 0 NA Intergenic Intergenic 26889 ENSMUSG00000108308.1 ENSMUSG00000108308 ENSMUST00000205533 Gm45218 lincRNA Interval_130641 chr5 129386485 129388598 + 0 NA Intergenic Intergenic 23421 ENSMUSG00000104681.1 ENSMUSG00000104681 ENSMUST00000199076 Gm43001 lincRNA Interval_174593 chrX 159568786 159569446 + 0 NA intron (ENSMUSG00000044150.12, intron 1 of 1) protein_coding-intron (ENSMUSG00000044150.12, intron 9 of 10) 1578 ENSMUSG00000044150.12 ENSMUSG00000044150 ENSMUST00000154694 Bclaf3 protein_coding Interval_27205 chr11 64088458 64090356 + 0 NA Intergenic Intergenic 9825 ENSMUSG00000087497.7 ENSMUSG00000087497 ENSMUST00000146333 2810001G20Rik antisense Interval_83057 chr18 80908195 80908463 + 0 NA intron (ENSMUSG00000024566.10, intron 4 of 4) protein_coding-intron (ENSMUSG00000024566.10, intron 4 of 29) 17476 ENSMUSG00000092973.1 ENSMUSG00000092973 ENSMUST00000175232 Gm25071 miRNA Interval_66900 chr16 38414768 38416107 + 0 NA exon (ENSMUSG00000002847.7, exon 3 of 11) protein_coding-exon (ENSMUSG00000002847.7, exon 3 of 11) 2357 ENSMUSG00000002847.7 ENSMUSG00000002847 ENSMUST00000232224 Pla1a protein_coding Interval_135070 chr6 35162753 35163153 + 0 NA Intergenic Intergenic -14663 ENSMUSG00000038759.15 ENSMUSG00000038759 ENSMUST00000200739 Nup205 protein_coding Interval_31430 chr11 100616223 100617147 + 0 NA intron (ENSMUSG00000014195.16, intron 1 of 13) protein_coding-intron (ENSMUSG00000014195.16, intron 1 of 13) 2946 ENSMUSG00000014195.16 ENSMUSG00000014195 ENSMUST00000132886 Dnajc7 protein_coding Interval_21529 chr10 129272414 129272659 + 0 NA Intergenic Intergenic -1051 ENSMUSG00000062914.3 ENSMUSG00000062914 ENSMUST00000080313 Olfr777 protein_coding Interval_8962 chr1 152765924 152767236 + 0 NA promoter-TSS (ENSMUSG00000008475.13) protein_coding-promoter-TSS (ENSMUSG00000008475.13) -1919 ENSMUSG00000008475.13 ENSMUSG00000008475 ENSMUST00000143008 Arpc5 protein_coding Interval_126019 chr5 76881858 76883071 + 0 NA promoter-TSS (ENSMUSG00000055923.16) protein_coding-promoter-TSS (ENSMUSG00000055923.16) 12614 ENSMUSG00000055923.16 ENSMUSG00000055923 ENSMUST00000134805 Aasdh protein_coding Interval_136864 chr6 61860049 61860676 + 0 NA intron (ENSMUSG00000039578.17, intron 9 of 10) protein_coding-intron (ENSMUSG00000039578.17, intron 8 of 9) -96327 ENSMUSG00000039578.17 ENSMUSG00000039578 ENSMUST00000232648 Ccser1 protein_coding Interval_170939 chr9 112661018 112661529 + 0 NA Intergenic Intergenic 138744 ENSMUSG00000096353.1 ENSMUSG00000096353 ENSMUST00000179604 Gm24957 snoRNA Interval_157053 chr8 64815086 64815283 + 0 NA intron (ENSMUSG00000031605.8, intron 3 of 13) protein_coding-intron (ENSMUSG00000031605.8, intron 3 of 14) -6046 ENSMUSG00000109879.1 ENSMUSG00000109879 ENSMUST00000210294 Gm10997 TEC Interval_43292 chr13 28799652 28799865 + 0 NA intron (ENSMUSG00000085936.7, intron 2 of 7) processed_transcript-intron (ENSMUSG00000085936.7, intron 1 of 5) -27365 ENSMUSG00000092093.1 ENSMUSG00000092093 ENSMUST00000171026 Gm17528 pseudogene Interval_119113 chr4 135623069 135623875 + 0 NA Intergenic Intergenic -3346 ENSMUSG00000086788.2 ENSMUSG00000086788 ENSMUST00000148529 1700029M20Rik lincRNA Interval_2614 chr1 42242843 42243568 + 0 NA Intergenic Intergenic -4510 ENSMUSG00000101919.1 ENSMUSG00000101919 ENSMUST00000191125 Gm29664 lincRNA Interval_170586 chr9 109028379 109029138 + 0 NA intron (ENSMUSG00000025648.18, intron 5 of 5) protein_coding-intron (ENSMUSG00000025648.18, intron 12 of 13) -22397 ENSMUSG00000025647.16 ENSMUSG00000025647 ENSMUST00000199288 Shisa5 protein_coding Interval_139436 chr6 100170544 100171495 + 0 NA Intergenic Intergenic -27205 ENSMUSG00000107558.1 ENSMUSG00000107558 ENSMUST00000204605 2010109P13Rik TEC Interval_18413 chr10 85621247 85621626 + 0 NA intron (ENSMUSG00000020042.15, intron 4 of 16) protein_coding-intron (ENSMUSG00000020042.15, intron 4 of 9) -23767 ENSMUSG00000020042.15 ENSMUSG00000020042 ENSMUST00000145433 Btbd11 protein_coding Interval_154489 chr8 18635929 18636193 + 0 NA intron (ENSMUSG00000039842.15, intron 8 of 11) protein_coding-intron (ENSMUSG00000039842.15, intron 8 of 13) 20928 ENSMUSG00000090334.1 ENSMUSG00000090334 ENSMUST00000164712 Gm17149 processed_pseudogene Interval_508 chr1 6729335 6729619 + 0 NA promoter-TSS (ENSMUSG00000033740.17) protein_coding-promoter-TSS (ENSMUSG00000033740.17) -8098 ENSMUSG00000033740.17 ENSMUSG00000033740 ENSMUST00000130338 St18 protein_coding Interval_49819 chr13 116514522 116514759 + 0 NA Intergenic Intergenic 148951 ENSMUSG00000114347.1 ENSMUSG00000114347 ENSMUST00000225601 Gm47913 lincRNA Interval_68848 chr16 87578672 87579745 + 0 NA intron (ENSMUSG00000025610.7, intron 3 of 4) protein_coding-intron (ENSMUSG00000025610.7, intron 3 of 4) 25878 ENSMUSG00000025610.7 ENSMUSG00000025610 ENSMUST00000026700 Map3k7cl protein_coding Interval_30733 chr11 96177500 96178557 + 0 NA exon (ENSMUSG00000086337.1, exon 1 of 2) lincRNA-exon (ENSMUSG00000086337.1, exon 1 of 2) 477 ENSMUSG00000086337.1 ENSMUSG00000086337 ENSMUST00000145517 Gm11535 lincRNA Interval_139971 chr6 113118903 113119912 + 0 NA intron (ENSMUSG00000034269.12, intron 13 of 17) protein_coding-intron (ENSMUSG00000034269.12, intron 12 of 21) 8990 ENSMUSG00000034269.12 ENSMUSG00000034269 ENSMUST00000156048 Setd5 protein_coding Interval_127932 chr5 109479887 109480103 + 0 NA Intergenic Intergenic 6599 ENSMUSG00000105303.1 ENSMUSG00000105303 ENSMUST00000197935 Gm18555 processed_pseudogene Interval_97069 chr2 130948814 130949225 + 0 NA intron (ENSMUSG00000027312.14, intron 6 of 23) protein_coding-intron (ENSMUSG00000027312.14, intron 6 of 28) -38965 ENSMUSG00000083953.1 ENSMUSG00000083953 ENSMUST00000121009 Gm14049 processed_pseudogene Interval_59983 chr15 62599940 62600140 + 0 NA intron (ENSMUSG00000115862.1, intron 1 of 3) lincRNA-intron (ENSMUSG00000115862.1, intron 1 of 3) 32065 ENSMUSG00000115862.1 ENSMUSG00000115862 ENSMUST00000230029 Gm41333 lincRNA Interval_59966 chr15 62302522 62302804 + 0 NA intron (ENSMUSG00000097039.8, intron 5 of 9) lincRNA-intron (ENSMUSG00000097039.8, intron 5 of 9) -83331 ENSMUSG00000101167.1 ENSMUSG00000101167 ENSMUST00000151919 Macroh2a3 processed_pseudogene Interval_101060 chr2 174760302 174761778 + 0 NA promoter-TSS (ENSMUSG00000027524.9) protein_coding-promoter-TSS (ENSMUSG00000027524.9) -8882 ENSMUSG00000027524.9 ENSMUSG00000027524 ENSMUST00000162473 Edn3 protein_coding Interval_143004 chr6 148282238 148282487 + 0 NA intron (ENSMUSG00000030306.14, intron 10 of 18) protein_coding-intron (ENSMUSG00000030306.14, intron 11 of 19) 21212 ENSMUSG00000082199.1 ENSMUSG00000082199 ENSMUST00000120136 Gm15763 processed_pseudogene Interval_74972 chr17 58561655 58562066 + 0 NA Intergenic Intergenic 18107 ENSMUSG00000117271.1 ENSMUSG00000117271 ENSMUST00000232830 Gm6149 processed_pseudogene Interval_63546 chr15 101959431 101959655 + 0 NA Intergenic Intergenic -5256 ENSMUSG00000050463.9 ENSMUSG00000050463 ENSMUST00000164932 Krt78 protein_coding Interval_169550 chr9 99080618 99080895 + 0 NA intron (ENSMUSG00000032462.14, intron 8 of 23) protein_coding-intron (ENSMUSG00000032462.14, intron 8 of 23) -45041 ENSMUSG00000044860.9 ENSMUSG00000044860 ENSMUST00000076730 Gm1123 protein_coding Interval_93656 chr2 75639601 75640060 + 0 NA Intergenic Intergenic -6448 ENSMUSG00000082152.1 ENSMUSG00000082152 ENSMUST00000119695 Gm13655 processed_pseudogene Interval_169749 chr9 100926802 100927547 + 0 NA intron (ENSMUSG00000037286.15, intron 3 of 7) protein_coding-intron (ENSMUSG00000037286.15, intron 22 of 32) -28595 ENSMUSG00000037286.15 ENSMUSG00000037286 ENSMUST00000191345 Stag1 protein_coding Interval_21176 chr10 127058194 127058432 + 0 NA exon (ENSMUSG00000040502.5, exon 2 of 4) protein_coding-exon (ENSMUSG00000040502.5, exon 2 of 4) 1871 ENSMUSG00000040502.5 ENSMUSG00000040502 ENSMUST00000040307 Marchf9 protein_coding Interval_6439 chr1 108699708 108700108 + 0 NA Intergenic Intergenic -70227 ENSMUSG00000101097.1 ENSMUSG00000101097 ENSMUST00000191467 Gm6679 processed_pseudogene Interval_52475 chr14 46812228 46812398 + 0 NA intron (ENSMUSG00000062014.13, intron 3 of 3) protein_coding-intron (ENSMUSG00000062014.13, intron 6 of 6) 3826 ENSMUSG00000062014.13 ENSMUSG00000062014 ENSMUST00000226842 Gmfb protein_coding Interval_99425 chr2 160964115 160964877 + 0 NA intron (ENSMUSG00000057133.14, intron 31 of 36) protein_coding-intron (ENSMUSG00000057133.14, intron 31 of 36) 20550 ENSMUSG00000057133.14 ENSMUSG00000057133 ENSMUST00000125179 Chd6 protein_coding Interval_825 chr1 12025617 12026323 + 0 NA Intergenic Intergenic -94990 ENSMUSG00000101610.1 ENSMUSG00000101610 ENSMUST00000187748 Gm7560 processed_pseudogene Interval_114747 chr4 84705104 84705395 + 0 NA Intergenic Intergenic 7386 ENSMUSG00000081775.1 ENSMUSG00000081775 ENSMUST00000119869 Gm12420 processed_pseudogene Interval_95043 chr2 103423843 103425064 + 0 NA promoter-TSS (ENSMUSG00000027186.15) protein_coding-promoter-TSS (ENSMUSG00000027186.15) 12765 ENSMUSG00000027186.15 ENSMUSG00000027186 ENSMUST00000152055 Elf5 protein_coding Interval_53170 chr14 54893500 54894924 + 0 NA promoter-TSS (ENSMUSG00000022194.15) protein_coding-promoter-TSS (ENSMUSG00000022194.15) 56 ENSMUSG00000022194.15 ENSMUSG00000022194 ENSMUST00000146271 Pabpn1 protein_coding Interval_36204 chr12 39048994 39049405 + 0 NA Intergenic Intergenic 50545 ENSMUSG00000113266.1 ENSMUSG00000113266 ENSMUST00000222031 Gm19563 processed_pseudogene Interval_146516 chr7 46543883 46544591 + 0 NA intron (ENSMUSG00000030839.12, intron 9 of 11) protein_coding-intron (ENSMUSG00000030839.12, intron 9 of 10) -17064 ENSMUSG00000087492.2 ENSMUSG00000087492 ENSMUST00000139791 Gm15700 antisense Interval_132637 chr5 146892657 146893535 + 0 NA Intergenic Intergenic 47331 ENSMUSG00000029641.8 ENSMUSG00000029641 ENSMUST00000198570 Rasl11a protein_coding Interval_59319 chr15 51626341 51626538 + 0 NA intron (ENSMUSG00000115563.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000115563.1, intron 1 of 2) 3196 ENSMUSG00000115563.1 ENSMUSG00000115563 ENSMUST00000227000 Gm34562 lincRNA Interval_34541 chr12 4973558 4974050 + 0 NA intron (ENSMUSG00000052812.5, intron 1 of 7) protein_coding-intron (ENSMUSG00000052812.5, intron 15 of 30) -8248 ENSMUSG00000052812.5 ENSMUSG00000052812 ENSMUST00000220408 Atad2b protein_coding Interval_123653 chr5 34293430 34294409 + 0 NA intron (ENSMUSG00000109572.1, intron 1 of 15) protein_coding-intron (ENSMUSG00000109572.1, intron 1 of 15) 5319 ENSMUSG00000109572.1 ENSMUSG00000109572 ENSMUST00000207754 Cfap99 protein_coding Interval_157979 chr8 77524789 77525186 + 0 NA Intergenic Intergenic -7204 ENSMUSG00000037148.8 ENSMUSG00000037148 ENSMUST00000210519 Arhgap10 protein_coding Interval_17854 chr10 80412672 80413270 + 0 NA exon (ENSMUSG00000020167.14, exon 18 of 19) protein_coding-exon (ENSMUSG00000020167.14, exon 18 of 19) -6176 ENSMUSG00000020163.12 ENSMUSG00000020163 ENSMUST00000141683 Uqcr11 protein_coding Interval_32293 chr11 106722388 106725111 + 0 NA intron (ENSMUSG00000020717.19, intron 1 of 15) protein_coding-intron (ENSMUSG00000020717.19, intron 1 of 15) -27516 ENSMUSG00000040528.15 ENSMUSG00000040528 ENSMUST00000182479 Milr1 protein_coding Interval_24256 chr11 31821837 31822568 + 0 NA intron (ENSMUSG00000085772.7, intron 2 of 3) lincRNA-intron (ENSMUSG00000085772.7, intron 2 of 3) 2322 ENSMUSG00000085772.7 ENSMUSG00000085772 ENSMUST00000126265 D630024D03Rik lincRNA Interval_110429 chr3 158031271 158032352 + 0 NA promoter-TSS (ENSMUSG00000055436.18) protein_coding-promoter-TSS (ENSMUSG00000055436.18) -57 ENSMUSG00000055436.18 ENSMUSG00000055436 ENSMUST00000197292 Srsf11 protein_coding Interval_58929 chr15 40130652 40131702 + 0 NA Intergenic Intergenic -3188 ENSMUSG00000094112.2 ENSMUSG00000094112 ENSMUST00000179120 9330182O14Rik protein_coding Interval_40709 chr12 107779395 107779891 + 0 NA intron (ENSMUSG00000086975.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000086975.1, intron 1 of 1) 4398 ENSMUSG00000086975.1 ENSMUSG00000086975 ENSMUST00000134448 Gm15208 lincRNA Interval_71910 chr17 26948390 26949859 + 0 NA intron (ENSMUSG00000067629.13, intron 3 of 18) protein_coding-intron (ENSMUSG00000067629.13, intron 3 of 19) -1005 ENSMUSG00000093118.1 ENSMUSG00000093118 ENSMUST00000175377 Mir3083 miRNA Interval_76227 chr17 78212970 78213536 + 0 NA intron (ENSMUSG00000024074.8, intron 1 of 4) protein_coding-intron (ENSMUSG00000024074.8, intron 1 of 16) -13228 ENSMUSG00000117648.1 ENSMUSG00000117648 ENSMUST00000234450 Gm32282 bidirectional_promoter_lncRNA Interval_173925 chrX 112479661 112480195 + 0 NA Intergenic Intergenic 15067 ENSMUSG00000083818.1 ENSMUSG00000083818 ENSMUST00000120930 Gm14908 processed_pseudogene Interval_165877 chr9 54139749 54141230 + 0 NA Intergenic Intergenic 41585 ENSMUSG00000032274.9 ENSMUSG00000032274 ENSMUST00000216974 Cyp19a1 protein_coding Interval_76231 chr17 78254506 78255347 + 0 NA intron (ENSMUSG00000024074.8, intron 1 of 4) protein_coding-intron (ENSMUSG00000024074.8, intron 2 of 16) 17154 ENSMUSG00000024074.8 ENSMUSG00000024074 ENSMUST00000234439 Crim1 protein_coding Interval_160910 chr8 114929677 114929894 + 0 NA intron (ENSMUSG00000004637.15, intron 8 of 8) protein_coding-intron (ENSMUSG00000004637.15, intron 8 of 8) 123128 ENSMUSG00000088428.1 ENSMUSG00000088428 ENSMUST00000157803 Gm22556 rRNA Interval_55487 chr14 88613174 88613994 + 0 NA Intergenic Intergenic -22449 ENSMUSG00000115623.1 ENSMUSG00000115623 ENSMUST00000227074 Gm41225 lincRNA Interval_26806 chr11 60726550 60728862 + 0 NA promoter-TSS (ENSMUSG00000002812.4) protein_coding-promoter-TSS (ENSMUSG00000002812.4) -737 ENSMUSG00000018599.5 ENSMUSG00000018599 ENSMUST00000146159 Mief2 protein_coding Interval_112008 chr4 33204659 33205119 + 0 NA Intergenic Intergenic 3125 ENSMUSG00000083887.1 ENSMUSG00000083887 ENSMUST00000117788 Gm11930 processed_pseudogene Interval_71829 chr17 26380803 26382061 + 0 NA Intergenic Intergenic -33397 ENSMUSG00000034413.14 ENSMUSG00000034413 ENSMUST00000053020 Neurl1b protein_coding Interval_15211 chr10 43388689 43388955 + 0 NA intron (ENSMUSG00000038240.13, intron 4 of 7) protein_coding-intron (ENSMUSG00000038240.13, intron 4 of 7) -14902 ENSMUSG00000089839.1 ENSMUSG00000089839 ENSMUST00000160308 Rps19-ps11 processed_pseudogene Interval_161546 chr8 121113359 121113792 + 0 NA intron (ENSMUSG00000092329.1, intron 1 of 15) protein_coding-intron (ENSMUSG00000092329.1, intron 1 of 15) -2596 ENSMUSG00000046714.7 ENSMUSG00000046714 ENSMUST00000054691 Foxc2 protein_coding Interval_93803 chr2 77017118 77017388 + 0 NA intron (ENSMUSG00000044033.16, intron 2 of 2) protein_coding-intron (ENSMUSG00000044033.16, intron 22 of 22) 5443 ENSMUSG00000044033.16 ENSMUSG00000044033 ENSMUST00000111833 Ccdc141 protein_coding Interval_62373 chr15 91284455 91284991 + 0 NA intron (ENSMUSG00000036298.10, intron 7 of 9) protein_coding-intron (ENSMUSG00000036298.10, intron 7 of 9) 85229 ENSMUSG00000078932.8 ENSMUSG00000078932 ENSMUST00000109284 CN725425 protein_coding Interval_69900 chr17 3062034 3062364 + 0 NA Intergenic Intergenic -4280 ENSMUSG00000088244.1 ENSMUSG00000088244 ENSMUST00000157619 Gm25909 snoRNA Interval_1175 chr1 16618523 16619843 + 0 NA promoter-TSS (ENSMUSG00000025939.19) protein_coding-promoter-TSS (ENSMUSG00000025939.19) 129 ENSMUSG00000025939.19 ENSMUSG00000025939 ENSMUST00000132919 Ube2w protein_coding Interval_8629 chr1 144792255 144792986 + 0 NA Intergenic Intergenic -17185 ENSMUSG00000026357.3 ENSMUSG00000026357 ENSMUST00000027603 Rgs18 protein_coding Interval_37976 chr12 73545349 73546729 + 0 NA exon (ENSMUSG00000034435.6, exon 1 of 1) protein_coding-exon (ENSMUSG00000034435.6, exon 1 of 1) 353 ENSMUSG00000034435.6 ENSMUSG00000034435 ENSMUST00000042975 Tmem30b protein_coding Interval_118366 chr4 130920913 130922543 + 0 NA intron (ENSMUSG00000028581.17, intron 1 of 7) protein_coding-intron (ENSMUSG00000028581.17, intron 1 of 7) 8370 ENSMUSG00000028581.17 ENSMUSG00000028581 ENSMUST00000125332 Laptm5 protein_coding Interval_107303 chr3 105638204 105638564 + 0 NA intron (ENSMUSG00000040896.16, intron 2 of 4) protein_coding-intron (ENSMUSG00000040896.16, intron 1 of 6) -30621 ENSMUSG00000040896.16 ENSMUSG00000040896 ENSMUST00000147209 Kcnd3 protein_coding Interval_131941 chr5 140938748 140939129 + 0 NA intron (ENSMUSG00000036526.8, intron 1 of 2) protein_coding-intron (ENSMUSG00000036526.8, intron 1 of 24) 61533 ENSMUSG00000036526.8 ENSMUSG00000036526 ENSMUST00000199091 Card11 protein_coding Interval_171862 chr9 121838937 121839820 + 0 NA promoter-TSS (ENSMUSG00000079235.10) protein_coding-promoter-TSS (ENSMUSG00000079235.10) 7559 ENSMUSG00000111341.1 ENSMUSG00000111341 ENSMUST00000217162 Gm47111 TEC Interval_164419 chr9 36890502 36891004 + 0 NA TTS (ENSMUSG00000035934.16) protein_coding-TTS (ENSMUSG00000035934.16) 57945 ENSMUSG00000032118.16 ENSMUSG00000032118 ENSMUST00000161978 Fez1 protein_coding Interval_132631 chr5 146844268 146845708 + 0 NA promoter-TSS (ENSMUSG00000029641.8) protein_coding-promoter-TSS (ENSMUSG00000029641.8) -777 ENSMUSG00000029641.8 ENSMUSG00000029641 ENSMUST00000198570 Rasl11a protein_coding Interval_162776 chr9 8964329 8965292 + 0 NA intron (ENSMUSG00000031870.16, intron 7 of 7) protein_coding-intron (ENSMUSG00000031870.16, intron 7 of 7) -6981 ENSMUSG00000078117.2 ENSMUSG00000078117 ENSMUST00000104915 Gm16485 TEC Interval_166685 chr9 61907004 61907201 + 0 NA Intergenic Intergenic 7440 ENSMUSG00000007892.8 ENSMUSG00000007892 ENSMUST00000008036 Rplp1 protein_coding Interval_163817 chr9 26812520 26812822 + 0 NA Intergenic Intergenic -8973 ENSMUSG00000036395.15 ENSMUSG00000036395 ENSMUST00000216272 Glb1l2 protein_coding Interval_136610 chr6 56625634 56626842 + 0 NA intron (ENSMUSG00000004347.17, intron 1 of 19) protein_coding-intron (ENSMUSG00000004347.17, intron 1 of 19) -25289 ENSMUSG00000077682.1 ENSMUSG00000077682 ENSMUST00000104494 Gm22493 snoRNA Interval_70891 chr17 15680215 15681192 + 0 NA Intergenic Intergenic 48915 ENSMUSG00000116924.1 ENSMUSG00000116924 ENSMUST00000231822 4933401D09Rik lincRNA Interval_47390 chr13 83092126 83092410 + 0 NA intron (ENSMUSG00000114372.1, intron 2 of 3) lincRNA-intron (ENSMUSG00000114372.1, intron 2 of 3) 26811 ENSMUSG00000114372.1 ENSMUSG00000114372 ENSMUST00000225970 2310067P03Rik lincRNA Interval_31569 chr11 101435411 101437309 + 0 NA TTS (ENSMUSG00000035007.5) protein_coding-TTS (ENSMUSG00000035007.5) -8514 ENSMUSG00000063316.13 ENSMUSG00000063316 ENSMUST00000152162 Rpl27 protein_coding Interval_107376 chr3 107029681 107030404 + 0 NA intron (ENSMUSG00000098108.7, intron 2 of 5) antisense-intron (ENSMUSG00000098108.7, intron 2 of 5) -6127 ENSMUSG00000047959.4 ENSMUSG00000047959 ENSMUST00000052718 Kcna3 protein_coding Interval_35080 chr12 17165433 17166446 + 0 NA Intergenic Intergenic 10949 ENSMUSG00000051726.6 ENSMUSG00000051726 ENSMUST00000170580 Kcnf1 protein_coding Interval_18134 chr10 82879933 82880452 + 0 NA intron (ENSMUSG00000020250.10, intron 7 of 14) protein_coding-intron (ENSMUSG00000020250.10, intron 6 of 13) 13566 ENSMUSG00000109864.1 ENSMUSG00000109864 ENSMUST00000211623 Eid3 protein_coding Interval_67969 chr16 62140862 62141142 + 0 NA Intergenic Intergenic 43541 ENSMUSG00000116619.1 ENSMUSG00000116619 ENSMUST00000232249 Gm49615 lincRNA Interval_2096 chr1 36392744 36392963 + 0 NA intron (ENSMUSG00000037432.15, intron 19 of 52) protein_coding-intron (ENSMUSG00000037432.15, intron 19 of 52) 7389 ENSMUSG00000037432.15 ENSMUSG00000037432 ENSMUST00000140452 Fer1l5 protein_coding Interval_152611 chr7 135181592 135181788 + 0 NA Intergenic Intergenic 14312 ENSMUSG00000100717.6 ENSMUSG00000100717 ENSMUST00000187267 1700120G07Rik lincRNA Interval_169465 chr9 97708718 97709085 + 0 NA intron (ENSMUSG00000032452.12, intron 2 of 16) protein_coding-intron (ENSMUSG00000032452.12, intron 2 of 17) 221254 ENSMUSG00000104462.1 ENSMUSG00000104462 ENSMUST00000191863 Gm37661 TEC Interval_129138 chr5 117675579 117676125 + 0 NA intron (ENSMUSG00000061578.8, intron 7 of 20) protein_coding-intron (ENSMUSG00000061578.8, intron 7 of 20) 155153 ENSMUSG00000107199.1 ENSMUSG00000107199 ENSMUST00000201553 Gm42550 TEC Interval_150430 chr7 110525385 110525635 + 0 NA intron (ENSMUSG00000038371.15, intron 2 of 18) protein_coding-intron (ENSMUSG00000038371.15, intron 2 of 40) -1282 ENSMUSG00000060777.4 ENSMUSG00000060777 ENSMUST00000167650 Gm10087 processed_pseudogene Interval_133142 chr5 150149742 150150182 + 0 NA intron (ENSMUSG00000056602.12, intron 1 of 6) protein_coding-intron (ENSMUSG00000056602.12, intron 1 of 4) -67167 ENSMUSG00000107384.1 ENSMUSG00000107384 ENSMUST00000202037 Gm42557 antisense Interval_105841 chr3 89664644 89666088 + 0 NA intron (ENSMUSG00000000794.9, intron 1 of 1) protein_coding-intron (ENSMUSG00000000794.9, intron 7 of 7) 2848 ENSMUSG00000000794.9 ENSMUSG00000000794 ENSMUST00000124584 Kcnn3 protein_coding Interval_143785 chr7 16296876 16297265 + 0 NA Intergenic Intergenic -11323 ENSMUSG00000002083.13 ENSMUSG00000002083 ENSMUST00000147267 Bbc3 protein_coding Interval_143882 chr7 16906623 16907780 + 0 NA exon (ENSMUSG00000043017.9, exon 1 of 2) protein_coding-exon (ENSMUSG00000043017.9, exon 1 of 2) 687 ENSMUSG00000043017.9 ENSMUSG00000043017 ENSMUST00000144408 Ptgir protein_coding Interval_75366 chr17 66152943 66155094 + 0 NA Intergenic Intergenic 10309 ENSMUSG00000035842.10 ENSMUSG00000035842 ENSMUST00000226095 Ddx11 protein_coding Interval_127142 chr5 100572047 100572759 + 0 NA promoter-TSS (ENSMUSG00000029322.12) protein_coding-promoter-TSS (ENSMUSG00000029322.12) -211 ENSMUSG00000029322.12 ENSMUSG00000029322 ENSMUST00000144595 Plac8 protein_coding Interval_74441 chr17 50627397 50628141 + 0 NA intron (ENSMUSG00000038910.7, intron 3 of 5) protein_coding-intron (ENSMUSG00000038910.7, intron 3 of 5) 20775 ENSMUSG00000038910.7 ENSMUSG00000038910 ENSMUST00000233823 Plcl2 protein_coding Interval_105210 chr3 83871649 83873535 + 0 NA Intergenic Intergenic -30825 ENSMUSG00000027995.10 ENSMUSG00000027995 ENSMUST00000029623 Tlr2 protein_coding Interval_20204 chr10 115808673 115809297 + 0 NA intron (ENSMUSG00000112513.1, intron 4 of 4) antisense-intron (ENSMUSG00000112513.1, intron 4 of 4) -7847 ENSMUSG00000034127.15 ENSMUSG00000034127 ENSMUST00000035563 Tspan8 protein_coding Interval_172072 chrX 6047501 6048797 + 0 NA exon (ENSMUSG00000073295.4, exon 1 of 2) protein_coding-exon (ENSMUSG00000073295.4, exon 1 of 2) 696 ENSMUSG00000073295.4 ENSMUSG00000073295 ENSMUST00000103007 Nudt11 protein_coding Interval_132707 chr5 147304165 147307488 + 0 NA intron (ENSMUSG00000029646.3, intron 1 of 2) protein_coding-intron (ENSMUSG00000029646.3, intron 1 of 2) 1444 ENSMUSG00000029646.3 ENSMUSG00000029646 ENSMUST00000031650 Cdx2 protein_coding Interval_161905 chr8 123666179 123667485 + 0 NA intron (ENSMUSG00000092329.1, intron 1 of 15) protein_coding-intron (ENSMUSG00000092329.1, intron 1 of 15) 12903 ENSMUSG00000039960.5 ENSMUSG00000039960 ENSMUST00000045487 Rhou protein_coding Interval_94964 chr2 102207213 102207483 + 0 NA Intergenic Intergenic 3031 ENSMUSG00000081774.1 ENSMUSG00000081774 ENSMUST00000118901 Gm13866 processed_pseudogene Interval_52424 chr14 46027314 46027952 + 0 NA exon (ENSMUSG00000083169.1, exon 1 of 1) processed_pseudogene-exon (ENSMUSG00000083169.1, exon 1 of 1) 205 ENSMUSG00000083169.1 ENSMUSG00000083169 ENSMUST00000117504 Gm6580 processed_pseudogene Interval_13382 chr10 17599304 17601398 + 0 NA intron (ENSMUSG00000112629.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000112629.1, intron 1 of 2) 58162 ENSMUSG00000112629.1 ENSMUSG00000112629 ENSMUST00000219966 Gm47771 lincRNA Interval_116027 chr4 107097077 107097411 + 0 NA promoter-TSS (ENSMUSG00000047636.3) protein_coding-promoter-TSS (ENSMUSG00000047636.3) -464 ENSMUSG00000047636.3 ENSMUSG00000047636 ENSMUST00000221740 Cdcp2 protein_coding Interval_31884 chr11 103585902 103586317 + 0 NA intron (ENSMUSG00000034239.14, intron 5 of 13) protein_coding-intron (ENSMUSG00000034239.14, intron 5 of 13) 14996 ENSMUSG00000081676.1 ENSMUSG00000081676 ENSMUST00000119578 Gm11643 processed_pseudogene Interval_156802 chr8 60535157 60535695 + 0 NA intron (ENSMUSG00000057228.6, intron 9 of 12) protein_coding-intron (ENSMUSG00000057228.6, intron 9 of 12) 29311 ENSMUSG00000057228.6 ENSMUSG00000057228 ENSMUST00000209338 Aadat protein_coding Interval_53532 chr14 58535159 58535406 + 0 NA Intergenic Intergenic 115118 ENSMUSG00000077201.1 ENSMUSG00000077201 ENSMUST00000104013 Gm25614 snoRNA Interval_166861 chr9 63333030 63333867 + 0 NA intron (ENSMUSG00000058444.8, intron 6 of 21) protein_coding-intron (ENSMUSG00000058444.8, intron 6 of 21) 44429 ENSMUSG00000058444.8 ENSMUSG00000058444 ENSMUST00000216999 Map2k5 protein_coding Interval_170381 chr9 107575242 107577339 + 0 NA promoter-TSS (ENSMUSG00000010051.15) protein_coding-promoter-TSS (ENSMUSG00000010051.15) -2597 ENSMUSG00000079334.8 ENSMUSG00000079334 ENSMUST00000093785 Naa80 protein_coding Interval_63479 chr15 101336342 101336830 + 0 NA intron (ENSMUSG00000116114.1, intron 1 of 4) antisense-intron (ENSMUSG00000116114.1, intron 1 of 4) 20484 ENSMUSG00000116395.1 ENSMUSG00000116395 ENSMUST00000229927 Gm49499 TEC Interval_67835 chr16 57585285 57585993 + 0 NA intron (ENSMUSG00000022748.8, intron 1 of 1) protein_coding-intron (ENSMUSG00000022748.8, intron 1 of 9) 21225 ENSMUSG00000022748.8 ENSMUSG00000022748 ENSMUST00000232413 Cmss1 protein_coding Interval_158735 chr8 85623201 85623381 + 0 NA Intergenic Intergenic 17829 ENSMUSG00000109731.1 ENSMUSG00000109731 ENSMUST00000211727 Gm45425 lincRNA Interval_20667 chr10 120130779 120132077 + 0 NA Intergenic Intergenic -18563 ENSMUSG00000020228.11 ENSMUSG00000020228 ENSMUST00000154501 Helb protein_coding Interval_40401 chr12 104648081 104648772 + 0 NA Intergenic Intergenic 73626 ENSMUSG00000041415.10 ENSMUSG00000041415 ENSMUST00000222002 Dicer1 protein_coding Interval_21495 chr10 128917858 128918087 + 0 NA promoter-TSS (ENSMUSG00000025350.15) protein_coding-promoter-TSS (ENSMUSG00000025350.15) 1325 ENSMUSG00000025350.15 ENSMUSG00000025350 ENSMUST00000135161 Rdh5 protein_coding Interval_105535 chr3 87499098 87499700 + 0 NA intron (ENSMUSG00000048031.15, intron 11 of 11) protein_coding-intron (ENSMUSG00000048031.15, intron 11 of 11) -26179 ENSMUSG00000003382.18 ENSMUSG00000003382 ENSMUST00000152010 Etv3 protein_coding Interval_2489 chr1 39718543 39718914 + 0 NA intron (ENSMUSG00000057173.8, intron 1 of 14) protein_coding-intron (ENSMUSG00000057173.8, intron 1 of 14) 2269 ENSMUSG00000057173.8 ENSMUSG00000057173 ENSMUST00000126760 Rfx8 protein_coding Interval_76215 chr17 77469962 77470461 + 0 NA Intergenic Intergenic -107001 ENSMUSG00000117578.1 ENSMUSG00000117578 ENSMUST00000234215 Rpsa-ps8 processed_pseudogene Interval_40615 chr12 106041779 106042341 + 0 NA intron (ENSMUSG00000021115.15, intron 2 of 2) protein_coding-intron (ENSMUSG00000021115.15, intron 2 of 14) 16253 ENSMUSG00000021115.15 ENSMUSG00000021115 ENSMUST00000220629 Vrk1 protein_coding Interval_95645 chr2 113430256 113431160 + 0 NA intron (ENSMUSG00000044042.19, intron 2 of 17) protein_coding-intron (ENSMUSG00000044042.19, intron 3 of 18) 10386 ENSMUSG00000085448.1 ENSMUSG00000085448 ENSMUST00000143525 Gm13963 antisense Interval_115966 chr4 106640904 106641594 + 0 NA Intergenic Intergenic 5272 ENSMUSG00000034919.2 ENSMUSG00000034919 ENSMUST00000136505 Ttc22 protein_coding Interval_168220 chr9 78016572 78017022 + 0 NA intron (ENSMUSG00000111335.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000111335.1, intron 1 of 2) 1779 ENSMUSG00000111335.1 ENSMUSG00000111335 ENSMUST00000217068 Gm39375 lincRNA Interval_157994 chr8 77687906 77688423 + 0 NA intron (ENSMUSG00000031616.7, intron 3 of 4) protein_coding-intron (ENSMUSG00000031616.7, intron 3 of 7) 28473 ENSMUSG00000109866.1 ENSMUSG00000109866 ENSMUST00000211466 Gm45714 TEC Interval_48589 chr13 100543392 100543732 + 0 NA intron (ENSMUSG00000021638.12, intron 1 of 8) protein_coding-intron (ENSMUSG00000021638.12, intron 1 of 8) 8919 ENSMUSG00000021638.12 ENSMUSG00000021638 ENSMUST00000159515 Ocln protein_coding Interval_159132 chr8 90904030 90904778 + 0 NA intron (ENSMUSG00000056608.14, intron 2 of 39) protein_coding-intron (ENSMUSG00000056608.14, intron 2 of 39) 4012 ENSMUSG00000074171.2 ENSMUSG00000074171 ENSMUST00000098517 Gm6658 TEC Interval_62935 chr15 98014140 98014555 + 0 NA Intergenic Intergenic -9856 ENSMUSG00000022483.17 ENSMUSG00000022483 ENSMUST00000230148 Col2a1 protein_coding Interval_129421 chr5 120024142 120024429 + 0 NA Intergenic Intergenic -40050 ENSMUSG00000064617.1 ENSMUSG00000064617 ENSMUST00000082683 n-R5s176 rRNA Interval_33651 chr11 117749413 117750050 + 0 NA TTS (ENSMUSG00000025571.13) protein_coding-TTS (ENSMUSG00000025571.13) 500 ENSMUSG00000025571.13 ENSMUSG00000025571 ENSMUST00000141287 Tnrc6c protein_coding Interval_146780 chr7 51007526 51007923 + 0 NA Intergenic Intergenic -20816 ENSMUSG00000109173.1 ENSMUSG00000109173 ENSMUST00000207544 Gm21036 processed_pseudogene Interval_109110 chr3 135859643 135859866 + 0 NA promoter-TSS (ENSMUSG00000106290.1) TEC-promoter-TSS (ENSMUSG00000106290.1) -594 ENSMUSG00000106290.1 ENSMUSG00000106290 ENSMUST00000197889 Gm43429 TEC Interval_44376 chr13 44440603 44442308 + 0 NA intron (ENSMUSG00000098107.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000098144.8, intron 1 of 3) -1642 ENSMUSG00000098124.1 ENSMUSG00000098124 ENSMUST00000182465 Gm27036 processed_pseudogene Interval_168654 chr9 85469233 85469879 + 0 NA Intergenic Intergenic -3178 ENSMUSG00000065274.1 ENSMUSG00000065274 ENSMUST00000083340 Gm25125 snoRNA Interval_136728 chr6 58652667 58653006 + 0 NA intron (ENSMUSG00000029802.13, intron 2 of 5) protein_coding-intron (ENSMUSG00000029802.13, intron 1 of 15) 12254 ENSMUSG00000029802.13 ENSMUSG00000029802 ENSMUST00000134426 Abcg2 protein_coding Interval_92829 chr2 66043775 66044361 + 0 NA Intergenic Intergenic 51156 ENSMUSG00000026994.9 ENSMUSG00000026994 ENSMUST00000153563 Galnt3 protein_coding Interval_168039 chr9 75544999 75545262 + 0 NA intron (ENSMUSG00000058587.9, intron 1 of 1) protein_coding-intron (ENSMUSG00000058587.9, intron 1 of 9) 14527 ENSMUSG00000058587.9 ENSMUSG00000058587 ENSMUST00000217459 Tmod3 protein_coding Interval_81643 chr18 62799445 62799799 + 0 NA Intergenic Intergenic -43307 ENSMUSG00000041789.7 ENSMUSG00000041789 ENSMUST00000048109 2700046A07Rik lincRNA Interval_146481 chr7 46254409 46254855 + 0 NA intron (ENSMUSG00000009487.10, intron 14 of 16) protein_coding-intron (ENSMUSG00000009487.10, intron 14 of 55) 13629 ENSMUSG00000009487.10 ENSMUSG00000009487 ENSMUST00000209802 Otog protein_coding Interval_97145 chr2 131747485 131748435 + 0 NA Intergenic Intergenic -26122 ENSMUSG00000086831.1 ENSMUSG00000086831 ENSMUST00000138080 Gm14280 antisense Interval_30630 chr11 95570483 95571515 + 0 NA exon (ENSMUSG00000000120.6, exon 6 of 6) protein_coding-exon (ENSMUSG00000000120.6, exon 6 of 6) 16736 ENSMUSG00000000120.6 ENSMUSG00000000120 ENSMUST00000000122 Ngfr protein_coding Interval_19844 chr10 110224734 110225478 + 0 NA intron (ENSMUSG00000020181.18, intron 2 of 40) protein_coding-intron (ENSMUSG00000020181.18, intron 2 of 4) -84937 ENSMUSG00000112595.1 ENSMUSG00000112595 ENSMUST00000218767 Gm47340 processed_pseudogene Interval_118915 chr4 134436212 134437358 + 0 NA Intergenic Intergenic 13386 ENSMUSG00000087343.1 ENSMUSG00000087343 ENSMUST00000131110 1700021N21Rik antisense Interval_117140 chr4 119939832 119940081 + 0 NA intron (ENSMUSG00000028634.17, intron 1 of 1) protein_coding-intron (ENSMUSG00000028634.17, intron 1 of 8) -92810 ENSMUSG00000028634.17 ENSMUSG00000028634 ENSMUST00000166542 Hivep3 protein_coding Interval_70039 chr17 4907109 4908995 + 0 NA Intergenic Intergenic -15065 ENSMUSG00000116813.1 ENSMUSG00000116813 ENSMUST00000232440 4930579D07Rik lincRNA Interval_137086 chr6 67259795 67260064 + 0 NA intron (ENSMUSG00000036371.6, intron 2 of 2) protein_coding-intron (ENSMUSG00000036371.6, intron 2 of 2) -7001 ENSMUSG00000108292.1 ENSMUSG00000108292 ENSMUST00000204263 Gm44050 processed_pseudogene Interval_19041 chr10 94011240 94011445 + 0 NA intron (ENSMUSG00000036099.16, intron 1 of 8) protein_coding-intron (ENSMUSG00000036099.16, intron 1 of 11) -16739 ENSMUSG00000111349.1 ENSMUSG00000111349 ENSMUST00000216926 Gm48191 processed_pseudogene Interval_127916 chr5 109025315 109025753 + 0 NA Intergenic Intergenic -8619 ENSMUSG00000093545.1 ENSMUSG00000093545 ENSMUST00000176461 Gm5871 processed_pseudogene Interval_105239 chr3 84103009 84103610 + 0 NA intron (ENSMUSG00000033752.7, intron 6 of 7) protein_coding-intron (ENSMUSG00000033752.7, intron 6 of 7) -39857 ENSMUSG00000103261.1 ENSMUSG00000103261 ENSMUST00000192340 Gm36981 TEC Interval_152311 chr7 131649543 131650094 + 0 NA intron (ENSMUSG00000030849.18, intron 2 of 6) protein_coding-intron (ENSMUSG00000030849.18, intron 2 of 6) 25064 ENSMUSG00000109066.1 ENSMUSG00000109066 ENSMUST00000207218 Gm4585 processed_pseudogene Interval_125686 chr5 73236560 73238487 + 0 NA intron (ENSMUSG00000070733.13, intron 1 of 11) protein_coding-intron (ENSMUSG00000070733.13, intron 1 of 62) -24880 ENSMUSG00000090561.2 ENSMUSG00000090561 ENSMUST00000168686 Gm17207 sense_intronic Interval_49626 chr13 113634170 113634356 + 0 NA Intergenic Intergenic -20249 ENSMUSG00000042364.11 ENSMUSG00000042364 ENSMUST00000224883 Snx18 protein_coding Interval_77124 chr17 86731738 86732655 + 0 NA Intergenic Intergenic -28789 ENSMUSG00000087710.1 ENSMUSG00000087710 ENSMUST00000157085 Gm22235 snRNA Interval_144710 chr7 27665121 27665460 + 0 NA promoter-TSS (ENSMUSG00000040390.13) protein_coding-promoter-TSS (ENSMUSG00000040390.13) -183 ENSMUSG00000040390.13 ENSMUSG00000040390 ENSMUST00000138243 Map3k10 protein_coding Interval_67196 chr16 44299075 44300026 + 0 NA intron (ENSMUSG00000022696.17, intron 1 of 4) protein_coding-intron (ENSMUSG00000022696.17, intron 3 of 25) -17052 ENSMUSG00000022696.17 ENSMUSG00000022696 ENSMUST00000124651 Sidt1 protein_coding Interval_59842 chr15 59673956 59674621 + 0 NA Intergenic Intergenic -2175 ENSMUSG00000115010.1 ENSMUSG00000115010 ENSMUST00000227801 Gm20150 processed_pseudogene Interval_82819 chr18 77197671 77198781 + 0 NA intron (ENSMUSG00000025425.18, intron 1 of 6) protein_coding-intron (ENSMUSG00000025425.18, intron 1 of 7) -11863 ENSMUSG00000073532.3 ENSMUSG00000073532 ENSMUST00000097520 Gm7276 bidirectional_promoter_lncRNA Interval_121228 chr4 154213299 154214816 + 0 NA intron (ENSMUSG00000057751.14, intron 3 of 36) protein_coding-intron (ENSMUSG00000057751.14, intron 3 of 36) -6484 ENSMUSG00000081276.1 ENSMUSG00000081276 ENSMUST00000121194 Gm13132 processed_pseudogene Interval_84916 chr19 18733546 18734080 + 0 NA TTS (ENSMUSG00000064941.1) snRNA-TTS (ENSMUSG00000064941.1) -1037 ENSMUSG00000117878.1 ENSMUSG00000117878 ENSMUST00000237961 Gm50202 lincRNA Interval_19084 chr10 94344952 94345353 + 0 NA intron (ENSMUSG00000020023.18, intron 2 of 2) protein_coding-intron (ENSMUSG00000020023.18, intron 1 of 2) -46449 ENSMUSG00000053420.6 ENSMUSG00000053420 ENSMUST00000065826 Gm4792 protein_coding Interval_130183 chr5 124791039 124791540 + 0 NA promoter-TSS (ENSMUSG00000038011.15) protein_coding-promoter-TSS (ENSMUSG00000038011.15) 4736 ENSMUSG00000038011.15 ENSMUSG00000038011 ENSMUST00000196708 Dnah10 protein_coding Interval_34071 chr11 120357709 120358670 + 0 NA Intergenic Intergenic -8353 ENSMUSG00000025380.2 ENSMUSG00000025380 ENSMUST00000130476 Fscn2 protein_coding Interval_65148 chr16 20185498 20186536 + 0 NA exon (ENSMUSG00000041215.16, exon 1 of 2) protein_coding-exon (ENSMUSG00000041215.16, exon 1 of 2) -9005 ENSMUSG00000084838.3 ENSMUSG00000084838 ENSMUST00000117664 Gm10241 processed_pseudogene Interval_45085 chr13 52010262 52010484 + 0 NA Intergenic Intergenic 11554 ENSMUSG00000102173.1 ENSMUSG00000102173 ENSMUST00000192362 Gm37872 TEC Interval_132323 chr5 144182627 144184197 + 0 NA exon (ENSMUSG00000038970.7, exon 13 of 14) protein_coding-exon (ENSMUSG00000038970.7, exon 13 of 14) -6874 ENSMUSG00000052271.7 ENSMUSG00000052271 ENSMUST00000060747 Bhlha15 protein_coding Interval_163349 chr9 21000951 21003491 + 0 NA promoter-TSS (ENSMUSG00000003299.10) protein_coding-promoter-TSS (ENSMUSG00000003299.10) -694 ENSMUSG00000003299.10 ENSMUSG00000003299 ENSMUST00000216466 Mrpl4 protein_coding Interval_121004 chr4 152157927 152160728 + 0 NA promoter-TSS (ENSMUSG00000028940.2) protein_coding-promoter-TSS (ENSMUSG00000028940.2) -222 ENSMUSG00000028940.2 ENSMUSG00000028940 ENSMUST00000138991 Hes2 protein_coding Interval_42717 chr13 18497795 18498073 + 0 NA Intergenic Intergenic -100248 ENSMUSG00000009734.18 ENSMUSG00000009734 ENSMUST00000222900 Pou6f2 protein_coding Interval_20869 chr10 121620280 121621367 + 0 NA intron (ENSMUSG00000034667.8, intron 2 of 24) protein_coding-intron (ENSMUSG00000034667.8, intron 2 of 24) -2280 ENSMUSG00000092841.1 ENSMUSG00000092841 ENSMUST00000175100 Gm24330 miRNA Interval_83646 chr19 3451138 3452037 + 0 NA Intergenic Intergenic -34503 ENSMUSG00000114315.1 ENSMUSG00000114315 ENSMUST00000224419 Gm48696 antisense Interval_145131 chr7 30205513 30206007 + 0 NA Intergenic Intergenic 6978 ENSMUSG00000109142.1 ENSMUSG00000109142 ENSMUST00000208540 Gm44600 processed_pseudogene Interval_24023 chr11 29579702 29580619 + 0 NA Intergenic Intergenic -15627 ENSMUSG00000086707.1 ENSMUSG00000086707 ENSMUST00000137364 Gm12088 lincRNA Interval_44532 chr13 45809667 45810459 + 0 NA intron (ENSMUSG00000046876.16, intron 2 of 2) protein_coding-intron (ENSMUSG00000046876.16, intron 3 of 7) 60491 ENSMUSG00000114131.1 ENSMUSG00000114131 ENSMUST00000221126 Gm47460 antisense Interval_20514 chr10 118141173 118142332 + 0 NA promoter-TSS (ENSMUSG00000020212.14) protein_coding-promoter-TSS (ENSMUSG00000020212.14) -59 ENSMUSG00000020212.14 ENSMUSG00000020212 ENSMUST00000217767 Mdm1 protein_coding Interval_151148 chr7 118821021 118822073 + 0 NA promoter-TSS (ENSMUSG00000030982.19) protein_coding-promoter-TSS (ENSMUSG00000030982.19) -4157 ENSMUSG00000030982.19 ENSMUSG00000030982 ENSMUST00000209103 Vps35l protein_coding Interval_92660 chr2 62093238 62093533 + 0 NA intron (ENSMUSG00000026904.17, intron 1 of 26) protein_coding-intron (ENSMUSG00000026904.17, intron 1 of 24) -122713 ENSMUSG00000083018.1 ENSMUSG00000083018 ENSMUST00000121668 Gm13555 processed_pseudogene Interval_25480 chr11 48851556 48851769 + 0 NA TTS (ENSMUSG00000040350.16) protein_coding-TTS (ENSMUSG00000040350.16) 1831 ENSMUSG00000086245.1 ENSMUSG00000086245 ENSMUST00000156882 Gm16170 antisense Interval_61653 chr15 83210124 83210844 + 0 NA Intergenic Intergenic -34039 ENSMUSG00000116338.1 ENSMUSG00000116338 ENSMUST00000229317 7530414M10Rik lincRNA Interval_171286 chr9 116060492 116061225 + 0 NA intron (ENSMUSG00000056880.12, intron 13 of 13) protein_coding-intron (ENSMUSG00000056880.12, intron 14 of 14) -19794 ENSMUSG00000080848.3 ENSMUSG00000080848 ENSMUST00000117563 Gm9385 processed_pseudogene Interval_18217 chr10 83760382 83761263 + 0 NA intron (ENSMUSG00000087651.3, intron 4 of 4) protein_coding-intron (ENSMUSG00000087651.3, intron 5 of 5) 22913 ENSMUSG00000087651.3 ENSMUSG00000087651 ENSMUST00000218623 1500009L16Rik protein_coding Interval_141574 chr6 129517689 129518289 + 0 NA TTS (ENSMUSG00000030160.7) protein_coding-TTS (ENSMUSG00000030160.7) -4573 ENSMUSG00000108290.1 ENSMUSG00000108290 ENSMUST00000203022 Gm44120 TEC Interval_79625 chr18 34067927 34068133 + 0 NA Intergenic Intergenic -14996 ENSMUSG00000117961.1 ENSMUSG00000117961 ENSMUST00000235466 Gm50265 lincRNA Interval_140250 chr6 115791040 115793265 + 0 NA exon (ENSMUSG00000030319.8, exon 10 of 15) protein_coding-exon (ENSMUSG00000030319.8, exon 10 of 15) 15962 ENSMUSG00000064563.1 ENSMUSG00000064563 ENSMUST00000082629 Snora7a snoRNA Interval_36236 chr12 40108518 40108726 + 0 NA intron (ENSMUSG00000002565.16, intron 3 of 13) protein_coding-intron (ENSMUSG00000002565.16, intron 3 of 15) 25561 ENSMUSG00000002565.16 ENSMUSG00000002565 ENSMUST00000002640 Scin protein_coding Interval_154262 chr8 13913614 13915515 + 0 NA intron (ENSMUSG00000038365.8, intron 1 of 10) protein_coding-intron (ENSMUSG00000038365.8, intron 1 of 9) -12415 ENSMUSG00000038365.8 ENSMUSG00000038365 ENSMUST00000209310 Fbxo25 protein_coding Interval_151357 chr7 121640865 121641778 + 0 NA TTS (ENSMUSG00000063317.7) protein_coding-TTS (ENSMUSG00000063317.7) 25494 ENSMUSG00000063317.7 ENSMUSG00000063317 ENSMUST00000205473 Usp31 protein_coding Interval_132179 chr5 143137337 143138141 + 0 NA exon (ENSMUSG00000090981.6, exon 5 of 5) protein_coding-exon (ENSMUSG00000090981.6, exon 5 of 5) 461 ENSMUSG00000090981.6 ENSMUSG00000090981 ENSMUST00000218872 Olfr718-ps1 protein_coding Interval_143846 chr7 16712360 16713631 + 0 NA Intergenic Intergenic 6915 ENSMUSG00000108366.1 ENSMUSG00000108366 ENSMUST00000206264 Gm5586 processed_pseudogene Interval_165872 chr9 53998021 53998450 + 0 NA Intergenic Intergenic -45077 ENSMUSG00000111379.1 ENSMUSG00000111379 ENSMUST00000217574 Gm48346 lincRNA Interval_169944 chr9 103121243 103121580 + 0 NA exon (ENSMUSG00000102461.1, exon 1 of 1) TEC-exon (ENSMUSG00000102461.1, exon 1 of 1) 1043 ENSMUSG00000102461.1 ENSMUSG00000102461 ENSMUST00000195473 Gm37166 TEC Interval_123360 chr5 31745462 31745679 + 0 NA intron (ENSMUSG00000052139.18, intron 3 of 11) protein_coding-intron (ENSMUSG00000052139.18, intron 5 of 13) 37174 ENSMUSG00000107151.1 ENSMUSG00000107151 ENSMUST00000201018 Gm43810 TEC Interval_125676 chr5 73193974 73194607 + 0 NA exon (ENSMUSG00000070733.13, exon 3 of 3) protein_coding-exon (ENSMUSG00000070733.13, exon 3 of 3) -3873 ENSMUSG00000107109.1 ENSMUSG00000107109 ENSMUST00000201197 Gm42571 TEC Interval_67304 chr16 45786658 45787089 + 0 NA intron (ENSMUSG00000033149.17, intron 2 of 3) protein_coding-intron (ENSMUSG00000033149.17, intron 6 of 17) -14590 ENSMUSG00000033149.17 ENSMUSG00000033149 ENSMUST00000136317 Phldb2 protein_coding Interval_19821 chr10 109713171 109713813 + 0 NA TTS (ENSMUSG00000020181.18) protein_coding-TTS (ENSMUSG00000020181.18) 64713 ENSMUSG00000112260.1 ENSMUSG00000112260 ENSMUST00000219153 3110043J17Rik TEC Interval_58377 chr15 34008315 34009445 + 0 NA Intergenic Intergenic -3772 ENSMUSG00000115605.1 ENSMUSG00000115605 ENSMUST00000228920 Gm9643 processed_pseudogene Interval_34711 chr12 8875718 8876406 + 0 NA exon (ENSMUSG00000042976.6, exon 3 of 3) lincRNA-exon (ENSMUSG00000042976.6, exon 3 of 3) 1320 ENSMUSG00000042976.6 ENSMUSG00000042976 ENSMUST00000218928 9930038B18Rik lincRNA Interval_3251 chr1 55178301 55178588 + 0 NA intron (ENSMUSG00000025978.14, intron 7 of 7) protein_coding-intron (ENSMUSG00000025978.14, intron 8 of 8) -17391 ENSMUSG00000061863.6 ENSMUSG00000061863 ENSMUST00000161440 Gm6822 processed_pseudogene Interval_123501 chr5 33001146 33001593 + 0 NA Intergenic Intergenic 16799 ENSMUSG00000105929.1 ENSMUSG00000105929 ENSMUST00000196072 Gm43693 TEC Interval_93395 chr2 72749443 72750028 + 0 NA intron (ENSMUSG00000085427.7, intron 4 of 5) lincRNA-intron (ENSMUSG00000085427.7, intron 1 of 2) 46225 ENSMUSG00000085252.1 ENSMUSG00000085252 ENSMUST00000124829 8430437L04Rik lincRNA Interval_39959 chr12 100116302 100117646 + 0 NA intron (ENSMUSG00000021178.9, intron 7 of 10) protein_coding-intron (ENSMUSG00000021178.9, intron 7 of 10) 6759 ENSMUSG00000021178.9 ENSMUSG00000021178 ENSMUST00000221308 Psmc1 protein_coding Interval_106243 chr3 94879825 94880027 + 0 NA TTS (ENSMUSG00000038902.14) protein_coding-TTS (ENSMUSG00000038902.14) 2271 ENSMUSG00000038902.14 ENSMUSG00000038902 ENSMUST00000142253 Pogz protein_coding Interval_137553 chr6 73153643 73153962 + 0 NA intron (ENSMUSG00000052861.13, intron 21 of 75) protein_coding-intron (ENSMUSG00000052861.13, intron 22 of 76) -12122 ENSMUSG00000065072.1 ENSMUSG00000065072 ENSMUST00000083138 Gm24533 snoRNA Interval_58063 chr15 27564307 27564726 + 0 NA intron (ENSMUSG00000022265.7, intron 5 of 11) protein_coding-intron (ENSMUSG00000022265.7, intron 5 of 11) -6931 ENSMUSG00000022265.7 ENSMUSG00000022265 ENSMUST00000134004 Ank protein_coding Interval_31891 chr11 103648256 103648503 + 0 NA Intergenic Intergenic -1191 ENSMUSG00000046215.3 ENSMUSG00000046215 ENSMUST00000057870 Rprml protein_coding Interval_67436 chr16 48626498 48626788 + 0 NA intron (ENSMUSG00000022652.7, intron 5 of 5) protein_coding-intron (ENSMUSG00000022652.7, intron 25 of 26) 123805 ENSMUSG00000116640.1 ENSMUSG00000116640 ENSMUST00000231404 Gm8670 processed_pseudogene Interval_40906 chr12 109727510 109727931 + 0 NA promoter-TSS (ENSMUSG00000076063.1) miRNA-promoter-TSS (ENSMUSG00000076063.1) 387 ENSMUSG00000076219.1 ENSMUSG00000076219 ENSMUST00000102265 Mir487b miRNA Interval_87847 chr19 56458313 56458505 + 0 NA Intergenic Intergenic -3247 ENSMUSG00000035818.14 ENSMUSG00000035818 ENSMUST00000225008 Plekhs1 protein_coding Interval_121041 chr4 152384545 152387130 + 0 NA exon (ENSMUSG00000005045.16, exon 40 of 42) protein_coding-exon (ENSMUSG00000005045.16, exon 40 of 42) -24963 ENSMUSG00000090057.1 ENSMUSG00000090057 ENSMUST00000161416 Gm16333 antisense Interval_74374 chr17 49691143 49691876 + 0 NA intron (ENSMUSG00000023999.14, intron 6 of 22) protein_coding-intron (ENSMUSG00000023999.14, intron 6 of 11) 76337 ENSMUSG00000023999.14 ENSMUSG00000023999 ENSMUST00000159354 Kif6 protein_coding Interval_18622 chr10 88613081 88613530 + 0 NA Intergenic Intergenic -8280 ENSMUSG00000020061.18 ENSMUSG00000020061 ENSMUST00000156573 Mybpc1 protein_coding Interval_47297 chr13 80843040 80844039 + 0 NA Intergenic Intergenic 41985 ENSMUSG00000089827.1 ENSMUSG00000089827 ENSMUST00000161006 1700023H06Rik processed_transcript Interval_31584 chr11 101519470 101519952 + 0 NA intron (ENSMUSG00000017146.12, intron 1 of 2) protein_coding-intron (ENSMUSG00000017146.12, intron 11 of 22) 5147 ENSMUSG00000017146.12 ENSMUSG00000017146 ENSMUST00000190862 Brca1 protein_coding Interval_105961 chr3 90335344 90336027 + 0 NA exon (ENSMUSG00000108689.1, exon 1 of 1) TEC-exon (ENSMUSG00000108689.1, exon 1 of 1) 290 ENSMUSG00000108689.1 ENSMUSG00000108689 ENSMUST00000199820 Gm45354 TEC Interval_30887 chr11 97065444 97067647 + 0 NA promoter-TSS (ENSMUSG00000038534.19) protein_coding-promoter-TSS (ENSMUSG00000038534.19) 2777 ENSMUSG00000098769.1 ENSMUSG00000098769 ENSMUST00000183945 Mir8103 miRNA Interval_76671 chr17 83350371 83351848 + 0 NA promoter-TSS (ENSMUSG00000032624.16) protein_coding-promoter-TSS (ENSMUSG00000032624.16) 62563 ENSMUSG00000094256.2 ENSMUSG00000094256 ENSMUST00000077420 Rpl21-ps7 processed_pseudogene Interval_109806 chr3 147646502 147646848 + 0 NA Intergenic Intergenic -11028 ENSMUSG00000103349.1 ENSMUSG00000103349 ENSMUST00000195819 Gm36888 lincRNA Interval_39711 chr12 94312509 94312888 + 0 NA Intergenic Intergenic -252997 ENSMUSG00000113215.1 ENSMUSG00000113215 ENSMUST00000222410 Gm18749 processed_pseudogene Interval_73784 chr17 43611724 43612298 + 0 NA exon (ENSMUSG00000023913.17, exon 12 of 12) protein_coding-exon (ENSMUSG00000023913.17, exon 12 of 12) 18255 ENSMUSG00000040140.15 ENSMUSG00000040140 ENSMUST00000233077 Tdrd6 protein_coding Interval_93693 chr2 75937850 75938930 + 0 NA exon (ENSMUSG00000075273.4, exon 1 of 1) protein_coding-exon (ENSMUSG00000075273.4, exon 1 of 1) 195 ENSMUSG00000075273.4 ENSMUSG00000075273 ENSMUST00000099996 Ttc30b protein_coding Interval_131798 chr5 139950746 139951274 + 0 NA intron (ENSMUSG00000048988.8, intron 1 of 1) protein_coding-intron (ENSMUSG00000048988.8, intron 1 of 1) 12781 ENSMUSG00000106090.1 ENSMUSG00000106090 ENSMUST00000196164 Gm43704 processed_pseudogene Interval_161500 chr8 120751928 120752200 + 0 NA promoter-TSS (ENSMUSG00000041515.10) protein_coding-promoter-TSS (ENSMUSG00000041515.10) 15705 ENSMUSG00000041515.10 ENSMUSG00000041515 ENSMUST00000160594 Irf8 protein_coding Interval_30508 chr11 94832315 94833020 + 0 NA Intergenic Intergenic -3737 ENSMUSG00000081007.1 ENSMUSG00000081007 ENSMUST00000120758 Gm11543 unprocessed_pseudogene Interval_11946 chr1 187379569 187379795 + 0 NA Intergenic Intergenic -2213 ENSMUSG00000104245.1 ENSMUSG00000104245 ENSMUST00000192285 Gm38155 antisense Interval_98288 chr2 150824195 150824516 + 0 NA intron (ENSMUSG00000033059.7, intron 1 of 3) protein_coding-intron (ENSMUSG00000033059.7, intron 15 of 19) 9033 ENSMUSG00000033059.7 ENSMUSG00000033059 ENSMUST00000135717 Pygb protein_coding Interval_142168 chr6 137764349 137765905 + 0 NA TTS (ENSMUSG00000030225.11) protein_coding-TTS (ENSMUSG00000030225.11) 20087 ENSMUSG00000030224.10 ENSMUSG00000030224 ENSMUST00000137235 Strap protein_coding Interval_142532 chr6 143114333 143115797 + 0 NA intron (ENSMUSG00000108094.1, intron 7 of 8) lincRNA-intron (ENSMUSG00000108094.1, intron 7 of 8) 9993 ENSMUSG00000107693.1 ENSMUSG00000107693 ENSMUST00000203536 Gm44312 processed_pseudogene Interval_77659 chr17 93712075 93712442 + 0 NA Intergenic Intergenic -31224 ENSMUSG00000117537.1 ENSMUSG00000117537 ENSMUST00000234228 Gm50003 processed_pseudogene Interval_167185 chr9 66004374 66004625 + 0 NA TTS (ENSMUSG00000032384.16) protein_coding-TTS (ENSMUSG00000032384.16) 46083 ENSMUSG00000032384.16 ENSMUSG00000032384 ENSMUST00000205489 Csnk1g1 protein_coding Interval_125945 chr5 76116511 76116947 + 0 NA Intergenic Intergenic -23971 ENSMUSG00000029233.15 ENSMUSG00000029233 ENSMUST00000124217 Srd5a3 protein_coding Interval_139260 chr6 97623486 97623962 + 0 NA Intergenic Intergenic -42632 ENSMUSG00000108093.1 ENSMUSG00000108093 ENSMUST00000204031 Gm44102 TEC Interval_139224 chr6 97309280 97309657 + 0 NA intron (ENSMUSG00000030064.16, intron 3 of 4) protein_coding-intron (ENSMUSG00000030064.16, intron 12 of 22) -18207 ENSMUSG00000030064.16 ENSMUSG00000030064 ENSMUST00000124050 Frmd4b protein_coding Interval_161537 chr8 121068361 121068658 + 0 NA intron (ENSMUSG00000097336.8, intron 2 of 6) protein_coding-intron (ENSMUSG00000092329.1, intron 1 of 15) 14601 ENSMUSG00000097336.8 ENSMUSG00000097336 ENSMUST00000182264 Fendrr processed_transcript Interval_156154 chr8 45232674 45233850 + 0 NA Intergenic Intergenic 28769 ENSMUSG00000031645.4 ENSMUSG00000031645 ENSMUST00000210622 F11 protein_coding Interval_61582 chr15 82720856 82721140 + 0 NA Intergenic Intergenic -1582 ENSMUSG00000116117.1 ENSMUSG00000116117 ENSMUST00000230684 Cyp2d39-ps unprocessed_pseudogene Interval_41942 chr13 4942303 4943277 + 0 NA exon (ENSMUSG00000113866.1, exon 1 of 2) lincRNA-exon (ENSMUSG00000113866.1, exon 1 of 2) 262 ENSMUSG00000113866.1 ENSMUSG00000113866 ENSMUST00000222131 Gm47450 lincRNA Interval_174734 chrX 164381509 164382661 + 0 NA intron (ENSMUSG00000031380.10, intron 1 of 6) protein_coding-intron (ENSMUSG00000031380.10, intron 1 of 6) -9158 ENSMUSG00000031380.10 ENSMUSG00000031380 ENSMUST00000124851 Vegfd protein_coding Interval_129698 chr5 121842178 121843383 + 0 NA Intergenic Intergenic 6064 ENSMUSG00000104719.1 ENSMUSG00000104719 ENSMUST00000197910 4933437G19Rik TEC Interval_99376 chr2 160414950 160415393 + 0 NA Intergenic Intergenic -48106 ENSMUSG00000074622.4 ENSMUSG00000074622 ENSMUST00000099126 Mafb protein_coding Interval_87001 chr19 45460904 45461561 + 0 NA TTS (ENSMUSG00000025217.15) protein_coding-TTS (ENSMUSG00000025217.15) -10037 ENSMUSG00000057605.4 ENSMUSG00000057605 ENSMUST00000077435 Gm6807 processed_pseudogene Interval_103163 chr3 36144821 36145615 + 0 NA Intergenic Intergenic -5944 ENSMUSG00000033883.11 ENSMUSG00000033883 ENSMUST00000165956 Zfp267 protein_coding Interval_152720 chr7 136825503 136826071 + 0 NA Intergenic Intergenic 14878 ENSMUSG00000110126.1 ENSMUSG00000110126 ENSMUST00000211473 Gm9347 processed_pseudogene Interval_105077 chr3 81027112 81027911 + 0 NA Intergenic Intergenic -5443 ENSMUSG00000106293.1 ENSMUSG00000106293 ENSMUST00000198860 Gm42476 lincRNA Interval_74 GL456212.1 148275 148918 + 0 NA NA NA NA NA Interval_89698 chr2 24761707 24763543 + 0 NA intron (ENSMUSG00000004113.18, intron 1 of 46) protein_coding-intron (ENSMUSG00000004113.18, intron 1 of 46) 87924 ENSMUSG00000083973.1 ENSMUSG00000083973 ENSMUST00000121558 Gm13459 processed_pseudogene Interval_169428 chr9 97165277 97166043 + 0 NA Intergenic Intergenic -13519 ENSMUSG00000101502.1 ENSMUSG00000101502 ENSMUST00000190579 Rpl7a-ps10 processed_pseudogene Interval_83077 chr18 81098872 81099188 + 0 NA TTS (ENSMUSG00000118262.1) lincRNA-TTS (ENSMUSG00000118262.1) 15966 ENSMUSG00000118262.1 ENSMUSG00000118262 ENSMUST00000237649 Gm50423 lincRNA Interval_107646 chr3 109312759 109312972 + 0 NA Intergenic Intergenic -119998 ENSMUSG00000083717.1 ENSMUSG00000083717 ENSMUST00000120957 Gm13865 processed_pseudogene Interval_142120 chr6 137386260 137387397 + 0 NA intron (ENSMUSG00000030223.14, intron 7 of 25) protein_coding-intron (ENSMUSG00000030223.14, intron 7 of 26) -23931 ENSMUSG00000030223.14 ENSMUSG00000030223 ENSMUST00000203127 Ptpro protein_coding Interval_87617 chr19 53751550 53752130 + 0 NA intron (ENSMUSG00000043639.15, intron 1 of 13) protein_coding-intron (ENSMUSG00000043639.15, intron 1 of 13) 16470 ENSMUSG00000089807.1 ENSMUSG00000089807 ENSMUST00000161107 Gm16298 processed_pseudogene Interval_55655 chr14 98241845 98242172 + 0 NA Intergenic Intergenic 18817 ENSMUSG00000089425.1 ENSMUSG00000089425 ENSMUST00000158800 Gm26006 snoRNA Interval_109068 chr3 135553743 135556428 + 0 NA TTS (ENSMUSG00000028164.15) protein_coding-TTS (ENSMUSG00000028164.15) -8106 ENSMUSG00000028164.15 ENSMUSG00000028164 ENSMUST00000153412 Manba protein_coding Interval_78021 chr18 6792277 6792600 + 0 NA TTS (ENSMUSG00000117461.1) sense_overlapping-TTS (ENSMUSG00000117461.1) 3670 ENSMUSG00000117461.1 ENSMUSG00000117461 ENSMUST00000234748 Gm50081 sense_overlapping Interval_92608 chr2 61453913 61454908 + 0 NA Intergenic Intergenic -38356 ENSMUSG00000088340.1 ENSMUSG00000088340 ENSMUST00000157715 Gm22338 snoRNA Interval_89866 chr2 26098112 26098374 + 0 NA intron (ENSMUSG00000026932.14, intron 1 of 2) protein_coding-intron (ENSMUSG00000026932.14, intron 1 of 5) -6424 ENSMUSG00000026932.14 ENSMUSG00000026932 ENSMUST00000149408 Nacc2 protein_coding Interval_91547 chr2 42739736 42741142 + 0 NA Intergenic Intergenic -68596 ENSMUSG00000077351.2 ENSMUSG00000077351 ENSMUST00000104163 Gm24350 snoRNA Interval_147275 chr7 65416672 65418239 + 0 NA intron (ENSMUSG00000030516.14, intron 2 of 4) protein_coding-intron (ENSMUSG00000030516.14, intron 2 of 4) 15608 ENSMUSG00000108541.1 ENSMUSG00000108541 ENSMUST00000205496 Gm44795 processed_pseudogene Interval_97227 chr2 132368100 132368280 + 0 NA intron (ENSMUSG00000050558.13, intron 2 of 2) protein_coding-intron (ENSMUSG00000050558.13, intron 2 of 2) 17231 ENSMUSG00000050558.13 ENSMUSG00000050558 ENSMUST00000145995 Prokr2 protein_coding Interval_85078 chr19 22306162 22306444 + 0 NA intron (ENSMUSG00000052387.16, intron 1 of 24) protein_coding-intron (ENSMUSG00000052387.16, intron 1 of 24) -70685 ENSMUSG00000088558.1 ENSMUSG00000088558 ENSMUST00000157933 Gm22506 snoRNA Interval_55626 chr14 96512081 96512502 + 0 NA intron (ENSMUSG00000022076.10, intron 1 of 10) protein_coding-intron (ENSMUSG00000022076.10, intron 1 of 10) 6811 ENSMUSG00000022076.10 ENSMUSG00000022076 ENSMUST00000022666 Klhl1 protein_coding Interval_64768 chr16 15587472 15588801 + 0 NA TTS (ENSMUSG00000116386.1) processed_pseudogene-TTS (ENSMUSG00000116386.1) 771 ENSMUSG00000116386.1 ENSMUSG00000116386 ENSMUST00000229197 Gm49538 processed_pseudogene Interval_139951 chr6 113006791 113007358 + 0 NA Intergenic Intergenic 14952 ENSMUSG00000108215.1 ENSMUSG00000108215 ENSMUST00000203976 Gm8083 processed_pseudogene Interval_70735 chr17 14046794 14047599 + 0 NA Intergenic Intergenic 12335 ENSMUSG00000101361.2 ENSMUSG00000101361 ENSMUST00000186636 Gm7358 protein_coding Interval_73989 chr17 45885270 45885489 + 0 NA promoter-TSS (ENSMUSG00000117048.1) lincRNA-promoter-TSS (ENSMUSG00000117048.1) 33 ENSMUSG00000117048.1 ENSMUSG00000117048 ENSMUST00000233085 Gm41584 lincRNA Interval_9873 chr1 163627879 163629000 + 0 NA Intergenic Intergenic 4646 ENSMUSG00000102117.1 ENSMUSG00000102117 ENSMUST00000191040 Rpsa-ps1 processed_pseudogene Interval_92445 chr2 59758323 59758736 + 0 NA exon (ENSMUSG00000035168.16, exon 5 of 27) protein_coding-exon (ENSMUSG00000035168.16, exon 5 of 27) -47539 ENSMUSG00000035168.16 ENSMUSG00000035168 ENSMUST00000147650 Tanc1 protein_coding Interval_88847 chr2 11613928 11614416 + 0 NA Intergenic Intergenic -5476 ENSMUSG00000082727.2 ENSMUSG00000082727 ENSMUST00000117797 Gm13260 processed_pseudogene Interval_129744 chr5 122088635 122089683 + 0 NA Intergenic Intergenic -11873 ENSMUSG00000013936.12 ENSMUSG00000013936 ENSMUST00000126006 Myl2 protein_coding Interval_3504 chr1 59119514 59120713 + 0 NA promoter-TSS (ENSMUSG00000038079.14) protein_coding-promoter-TSS (ENSMUSG00000038079.14) -1 ENSMUSG00000038079.14 ENSMUSG00000038079 ENSMUST00000186820 Tmem237 protein_coding Interval_67212 chr16 44482088 44482414 + 0 NA TTS (ENSMUSG00000071550.14) protein_coding-TTS (ENSMUSG00000071550.14) 75878 ENSMUSG00000093046.1 ENSMUSG00000093046 ENSMUST00000175305 Mir3081 miRNA Interval_105294 chr3 84645032 84646626 + 0 NA intron (ENSMUSG00000102805.5, intron 3 of 9) protein_coding-intron (ENSMUSG00000102805.5, intron 3 of 9) -20381 ENSMUSG00000056498.13 ENSMUSG00000056498 ENSMUST00000128344 Tmem154 protein_coding Interval_50520 chr14 14601456 14601690 + 0 NA Intergenic Intergenic 11627 ENSMUSG00000114574.1 ENSMUSG00000114574 ENSMUST00000223638 Gm47685 processed_pseudogene Interval_172620 chrX 38473235 38474296 + 0 NA Intergenic Intergenic -2696 ENSMUSG00000087390.1 ENSMUSG00000087390 ENSMUST00000130251 Gm7598 lincRNA Interval_11492 chr1 182181525 182182916 + 0 NA Intergenic Intergenic -17734 ENSMUSG00000091013.3 ENSMUSG00000091013 ENSMUST00000169123 Vmn1r1 protein_coding Interval_132044 chr5 142463470 142464466 + 0 NA promoter-TSS (ENSMUSG00000039623.13) protein_coding-promoter-TSS (ENSMUSG00000039623.13) 24 ENSMUSG00000039623.13 ENSMUSG00000039623 ENSMUST00000197293 Ap5z1 protein_coding Interval_92123 chr2 53477112 53477844 + 0 NA Intergenic Intergenic -74448 ENSMUSG00000080716.1 ENSMUSG00000080716 ENSMUST00000119017 Gm13503 processed_pseudogene Interval_119685 chr4 139209201 139209887 + 0 NA intron (ENSMUSG00000028745.18, intron 1 of 3) protein_coding-intron (ENSMUSG00000028745.18, intron 1 of 8) 15433 ENSMUSG00000028745.18 ENSMUSG00000028745 ENSMUST00000132385 Capzb protein_coding Interval_125402 chr5 66702871 66704344 + 0 NA Intergenic Intergenic 14725 ENSMUSG00000107300.1 ENSMUSG00000107300 ENSMUST00000202376 Gm43279 TEC Interval_148378 chr7 80875353 80876995 + 0 NA TTS (ENSMUSG00000038797.13) protein_coding-TTS (ENSMUSG00000038797.13) 15223 ENSMUSG00000038797.13 ENSMUSG00000038797 ENSMUST00000155128 Zscan2 protein_coding Interval_9228 chr1 155243937 155245760 + 0 NA promoter-TSS (ENSMUSG00000033722.9) protein_coding-promoter-TSS (ENSMUSG00000033722.9) 13544 ENSMUSG00000103670.1 ENSMUSG00000103670 ENSMUST00000192162 Gm37622 antisense Interval_897 chr1 13057753 13058328 + 0 NA Intergenic Intergenic 1911 ENSMUSG00000104518.1 ENSMUSG00000104518 ENSMUST00000191708 Gm37162 TEC Interval_48349 chr13 98427823 98428503 + 0 NA intron (ENSMUSG00000099446.1, intron 2 of 2) lincRNA-intron (ENSMUSG00000099446.1, intron 2 of 2) 6902 ENSMUSG00000099446.1 ENSMUSG00000099446 ENSMUST00000186644 2310005E17Rik lincRNA Interval_153498 chr7 145221757 145222911 + 0 NA intron (ENSMUSG00000048677.9, intron 24 of 24) protein_coding-intron (ENSMUSG00000048677.9, intron 19 of 20) -14254 ENSMUSG00000109305.1 ENSMUSG00000109305 ENSMUST00000207841 Smim38 protein_coding Interval_142369 chr6 141086350 141086539 + 0 NA Intergenic Intergenic -51603 ENSMUSG00000107462.1 ENSMUSG00000107462 ENSMUST00000203682 Gm7384 processed_pseudogene Interval_140286 chr6 116139169 116139751 + 0 NA intron (ENSMUSG00000030126.17, intron 1 of 5) protein_coding-intron (ENSMUSG00000030126.17, intron 1 of 5) 31810 ENSMUSG00000092625.2 ENSMUSG00000092625 ENSMUST00000174032 Gm20404 antisense Interval_10229 chr1 167336911 167337708 + 0 NA Intergenic Intergenic 3115 ENSMUSG00000088246.1 ENSMUSG00000088246 ENSMUST00000157621 Gm25911 miRNA Interval_41867 chr13 3666968 3668291 + 0 NA Intergenic Intergenic 19092 ENSMUSG00000088475.1 ENSMUSG00000088475 ENSMUST00000157850 Gm23084 rRNA Interval_79590 chr18 33907764 33908448 + 0 NA intron (ENSMUSG00000024376.7, intron 3 of 23) protein_coding-intron (ENSMUSG00000024376.7, intron 3 of 23) 98860 ENSMUSG00000024376.7 ENSMUSG00000024376 ENSMUST00000237971 Epb41l4a protein_coding Interval_105729 chr3 88966549 88967838 + 0 NA intron (ENSMUSG00000028053.13, intron 2 of 27) protein_coding-intron (ENSMUSG00000028053.13, intron 1 of 26) 3536 ENSMUSG00000095712.1 ENSMUSG00000095712 ENSMUST00000178517 Gm26465 snRNA Interval_154369 chr8 15042309 15043124 + 0 NA exon (ENSMUSG00000049008.4, exon 2 of 2) protein_coding-exon (ENSMUSG00000049008.4, exon 2 of 2) 361 ENSMUSG00000049008.4 ENSMUSG00000049008 ENSMUST00000123331 BB014433 protein_coding Interval_55737 chr14 99411846 99412366 + 0 NA Intergenic Intergenic 24667 ENSMUSG00000115590.1 ENSMUSG00000115590 ENSMUST00000226661 Gm49219 processed_pseudogene Interval_18119 chr10 82794892 82795969 + 0 NA Intergenic Intergenic -16693 ENSMUSG00000056821.13 ENSMUSG00000056821 ENSMUST00000076984 1700028I16Rik lincRNA Interval_83482 chr18 86712787 86713641 + 0 NA exon (ENSMUSG00000024647.14, exon 3 of 5) protein_coding-exon (ENSMUSG00000024647.14, exon 3 of 5) 166 ENSMUSG00000024647.14 ENSMUSG00000024647 ENSMUST00000169470 Cbln2 protein_coding Interval_51382 chr14 27114380 27115767 + 0 NA intron (ENSMUSG00000021895.10, intron 1 of 13) protein_coding-intron (ENSMUSG00000021895.10, intron 1 of 13) 174 ENSMUSG00000021895.10 ENSMUSG00000021895 ENSMUST00000225494 Arhgef3 protein_coding Interval_103897 chr3 54722565 54722864 + 0 NA intron (ENSMUSG00000027751.13, intron 7 of 9) protein_coding-intron (ENSMUSG00000027751.13, intron 7 of 9) -8361 ENSMUSG00000094487.1 ENSMUSG00000094487 ENSMUST00000178832 Gm21958 protein_coding Interval_22593 chr11 12043038 12043279 + 0 NA Intergenic Intergenic 11145 ENSMUSG00000064802.1 ENSMUSG00000064802 ENSMUST00000082868 Gm24036 snRNA Interval_16049 chr10 60304512 60305990 + 0 NA exon (ENSMUSG00000012819.15, exon 1 of 3) protein_coding-exon (ENSMUSG00000012819.15, exon 1 of 3) 398 ENSMUSG00000012819.15 ENSMUSG00000012819 ENSMUST00000123309 Cdh23 protein_coding Interval_167188 chr9 66039796 66040039 + 0 NA TTS (ENSMUSG00000032384.16) protein_coding-TTS (ENSMUSG00000032384.16) -20305 ENSMUSG00000032383.7 ENSMUSG00000032383 ENSMUST00000034947 Ppib protein_coding Interval_28041 chr11 72423780 72423977 + 0 NA Intergenic Intergenic -11656 ENSMUSG00000040471.17 ENSMUSG00000040471 ENSMUST00000100903 Ggt6 protein_coding Interval_72166 chr17 28380412 28381097 + 0 NA Intergenic Intergenic -24580 ENSMUSG00000037446.14 ENSMUSG00000037446 ENSMUST00000150341 Tulp1 protein_coding Interval_8895 chr1 151878238 151881437 + 0 NA intron (ENSMUSG00000100685.1, intron 1 of 1) protein_coding-intron (ENSMUSG00000032666.16, intron 6 of 6) 4418 ENSMUSG00000100685.1 ENSMUSG00000100685 ENSMUST00000187716 Gm28610 antisense Interval_49834 chr13 116873371 116873974 + 0 NA intron (ENSMUSG00000021725.9, intron 16 of 24) protein_coding-intron (ENSMUSG00000021725.9, intron 18 of 26) -35494 ENSMUSG00000114290.1 ENSMUSG00000114290 ENSMUST00000224552 4930435F18Rik lincRNA Interval_703 chr1 10023824 10024584 + 0 NA TTS (ENSMUSG00000025917.9) protein_coding-TTS (ENSMUSG00000025917.9) 13741 ENSMUSG00000025917.9 ENSMUSG00000025917 ENSMUST00000191296 Cops5 protein_coding Interval_26090 chr11 54088876 54089302 + 0 NA Intergenic Intergenic -11886 ENSMUSG00000018906.14 ENSMUSG00000018906 ENSMUST00000139315 P4ha2 protein_coding Interval_98788 chr2 154969500 154970874 + 0 NA intron (ENSMUSG00000027596.10, intron 3 of 4) protein_coding-intron (ENSMUSG00000027596.10, intron 1 of 3) -43285 ENSMUSG00000027596.10 ENSMUSG00000027596 ENSMUST00000148300 a protein_coding Interval_75377 chr17 66241899 66242479 + 0 NA Intergenic Intergenic -5820 ENSMUSG00000117220.1 ENSMUSG00000117220 ENSMUST00000233452 Gm49932 lincRNA Interval_154996 chr8 25560124 25560611 + 0 NA intron (ENSMUSG00000031565.18, intron 5 of 17) protein_coding-intron (ENSMUSG00000031565.18, intron 5 of 17) -6499 ENSMUSG00000031565.18 ENSMUSG00000031565 ENSMUST00000133936 Fgfr1 protein_coding Interval_66467 chr16 34056061 34057248 + 0 NA intron (ENSMUSG00000061751.16, intron 33 of 48) protein_coding-intron (ENSMUSG00000061751.16, intron 34 of 59) 39374 ENSMUSG00000061751.16 ENSMUSG00000061751 ENSMUST00000132569 Kalrn protein_coding Interval_9273 chr1 155728908 155729124 + 0 NA intron (ENSMUSG00000026468.14, intron 1 of 4) protein_coding-intron (ENSMUSG00000026468.14, intron 1 of 5) 22668 ENSMUSG00000026468.14 ENSMUSG00000026468 ENSMUST00000195275 Lhx4 protein_coding Interval_65562 chr16 23332194 23332704 + 0 NA intron (ENSMUSG00000022885.16, intron 5 of 7) protein_coding-intron (ENSMUSG00000022885.16, intron 5 of 7) 91286 ENSMUSG00000084439.1 ENSMUSG00000084439 ENSMUST00000122490 Gm23430 misc_RNA Interval_74036 chr17 46193251 46193567 + 0 NA exon (ENSMUSG00000023953.9, exon 1 of 1) protein_coding-exon (ENSMUSG00000023953.9, exon 1 of 1) 2080 ENSMUSG00000023953.9 ENSMUSG00000023953 ENSMUST00000233924 Polh protein_coding Interval_16503 chr10 63236021 63238283 + 0 NA Intergenic Intergenic 7001 ENSMUSG00000045391.4 ENSMUSG00000045391 ENSMUST00000054837 1700120B22Rik bidirectional_promoter_lncRNA Interval_42673 chr13 17855341 17855994 + 0 NA Intergenic Intergenic 34721 ENSMUSG00000081285.2 ENSMUSG00000081285 ENSMUST00000118792 Gm18859 processed_pseudogene Interval_33274 chr11 115603353 115604637 + 0 NA promoter-TSS (ENSMUSG00000020740.13) protein_coding-promoter-TSS (ENSMUSG00000020740.13) 56 ENSMUSG00000020740.13 ENSMUSG00000020740 ENSMUST00000132503 Gga3 protein_coding Interval_46105 chr13 61771223 61773722 + 0 NA Intergenic Intergenic -27431 ENSMUSG00000095905.2 ENSMUSG00000095905 ENSMUST00000178835 Selenok-ps4 processed_pseudogene Interval_111024 chr4 11296709 11297328 + 0 NA intron (ENSMUSG00000045205.16, intron 6 of 12) protein_coding-intron (ENSMUSG00000045205.16, intron 6 of 18) -17599 ENSMUSG00000089185.1 ENSMUSG00000089185 ENSMUST00000158560 Gm22940 snRNA Interval_115051 chr4 88879766 88880181 + 0 NA exon (ENSMUSG00000045364.2, exon 1 of 1) protein_coding-exon (ENSMUSG00000045364.2, exon 1 of 1) 228 ENSMUSG00000045364.2 ENSMUSG00000045364 ENSMUST00000056014 Ifne protein_coding Interval_106702 chr3 99210100 99210652 + 0 NA TTS (ENSMUSG00000106197.1) sense_intronic-TTS (ENSMUSG00000106197.1) 3954 ENSMUSG00000106197.1 ENSMUSG00000106197 ENSMUST00000197309 Gm42717 sense_intronic Interval_133703 chr6 8955967 8958731 + 0 NA intron (ENSMUSG00000046178.3, intron 2 of 2) protein_coding-intron (ENSMUSG00000046178.3, intron 1 of 1) 8918 ENSMUSG00000046178.3 ENSMUSG00000046178 ENSMUST00000060369 Nxph1 protein_coding Interval_103229 chr3 37227442 37228547 + 0 NA intron (ENSMUSG00000027718.8, intron 2 of 3) protein_coding-intron (ENSMUSG00000027718.8, intron 2 of 4) -3339 ENSMUSG00000086517.1 ENSMUSG00000086517 ENSMUST00000147691 Gm12534 antisense Interval_119990 chr4 141267727 141268462 + 0 NA Intergenic Intergenic -2078 ENSMUSG00000085774.1 ENSMUSG00000085774 ENSMUST00000127875 Gm13055 antisense Interval_143229 chr7 4636443 4637045 + 0 NA intron (ENSMUSG00000052296.7, intron 4 of 4) protein_coding-intron (ENSMUSG00000052296.7, intron 15 of 23) -1792 ENSMUSG00000108571.1 ENSMUSG00000108571 ENSMUST00000206307 Gm6855 processed_pseudogene Interval_116270 chr4 109178078 109178411 + 0 NA intron (ENSMUSG00000028559.17, intron 1 of 23) protein_coding-intron (ENSMUSG00000028559.17, intron 1 of 23) -17047 ENSMUSG00000088014.1 ENSMUSG00000088014 ENSMUST00000157389 Gm23743 misc_RNA Interval_124031 chr5 37498449 37499931 + 0 NA intron (ENSMUSG00000029123.8, intron 4 of 11) protein_coding-intron (ENSMUSG00000029123.8, intron 4 of 11) -94327 ENSMUSG00000057290.5 ENSMUSG00000057290 ENSMUST00000079794 Gm15732 processed_pseudogene Interval_121428 chr4 155734193 155736064 + 0 NA promoter-TSS (ENSMUSG00000096221.3) antisense-promoter-TSS (ENSMUSG00000096221.3) 324 ENSMUSG00000084845.9 ENSMUSG00000084845 ENSMUST00000127188 Tmem240 protein_coding Interval_16499 chr10 63206635 63207126 + 0 NA Intergenic Intergenic 37273 ENSMUSG00000045391.4 ENSMUSG00000045391 ENSMUST00000054837 1700120B22Rik bidirectional_promoter_lncRNA Interval_52455 chr14 46610304 46610716 + 0 NA intron (ENSMUSG00000115665.1, intron 3 of 4) lincRNA-intron (ENSMUSG00000115665.1, intron 3 of 4) 2958 ENSMUSG00000115828.1 ENSMUSG00000115828 ENSMUST00000226841 Gm18761 processed_pseudogene Interval_39669 chr12 91969532 91969819 + 0 NA promoter-TSS (ENSMUSG00000098159.1) processed_pseudogene-promoter-TSS (ENSMUSG00000098159.1) -98 ENSMUSG00000098159.1 ENSMUSG00000098159 ENSMUST00000183260 Gm21614 processed_pseudogene Interval_70923 chr17 15996942 15997571 + 0 NA Intergenic Intergenic 151976 ENSMUSG00000116545.1 ENSMUSG00000116545 ENSMUST00000231929 Eif3s6-ps3 processed_pseudogene Interval_33541 chr11 117106698 117107365 + 0 NA Intergenic Intergenic -10004 ENSMUSG00000087057.7 ENSMUSG00000087057 ENSMUST00000147186 Gm11730 antisense Interval_88957 chr2 13537864 13538937 + 0 NA intron (ENSMUSG00000026723.10, intron 1 of 6) protein_coding-intron (ENSMUSG00000026723.10, intron 1 of 8) 6263 ENSMUSG00000026723.10 ENSMUSG00000026723 ENSMUST00000144957 Trdmt1 protein_coding Interval_25930 chr11 52692718 52693073 + 0 NA Intergenic Intergenic -71739 ENSMUSG00000036264.9 ENSMUSG00000036264 ENSMUST00000036796 Fstl4 protein_coding Interval_88923 chr2 12945018 12946041 + 0 NA intron (ENSMUSG00000026730.12, intron 1 of 1) protein_coding-intron (ENSMUSG00000026730.12, intron 1 of 4) -32410 ENSMUSG00000026730.12 ENSMUSG00000026730 ENSMUST00000195521 Pter protein_coding Interval_123283 chr5 31108144 31108726 + 0 NA promoter-TSS (ENSMUSG00000029151.14) protein_coding-promoter-TSS (ENSMUSG00000029151.14) 118 ENSMUSG00000053856.7 ENSMUSG00000053856 ENSMUST00000066544 Dnajc5g protein_coding Interval_92271 chr2 57772116 57772499 + 0 NA Intergenic Intergenic -118485 ENSMUSG00000087964.1 ENSMUSG00000087964 ENSMUST00000157339 Gm25388 snoRNA Interval_4539 chr1 74880823 74881062 + 0 NA TTS (ENSMUSG00000055197.4) protein_coding-TTS (ENSMUSG00000055197.4) 3666 ENSMUSG00000055197.4 ENSMUSG00000055197 ENSMUST00000162938 Fev protein_coding Interval_147713 chr7 72488847 72489219 + 0 NA Intergenic Intergenic -112956 ENSMUSG00000103673.1 ENSMUSG00000103673 ENSMUST00000192910 Gm37620 TEC Interval_44071 chr13 40716957 40718066 + 0 NA intron (ENSMUSG00000021359.16, intron 5 of 5) protein_coding-intron (ENSMUSG00000021359.16, intron 6 of 6) -5599 ENSMUSG00000114936.1 ENSMUSG00000114936 ENSMUST00000224038 Gm47061 antisense Interval_15639 chr10 52704196 52705212 + 0 NA intron (ENSMUSG00000038602.7, intron 1 of 7) protein_coding-intron (ENSMUSG00000038602.7, intron 1 of 7) 10866 ENSMUSG00000111918.1 ENSMUSG00000111918 ENSMUST00000220050 Gm47624 TEC Interval_118207 chr4 129533969 129534887 + 0 NA intron (ENSMUSG00000028800.15, intron 2 of 2) protein_coding-intron (ENSMUSG00000028800.15, intron 2 of 13) -9844 ENSMUSG00000028800.15 ENSMUSG00000028800 ENSMUST00000139305 Hdac1 protein_coding Interval_102071 chr3 16445085 16445827 + 0 NA Intergenic Intergenic 262220 ENSMUSG00000047213.14 ENSMUSG00000047213 ENSMUST00000108346 Ythdf3 protein_coding Interval_150122 chr7 107021812 107022010 + 0 NA Intergenic Intergenic -9263 ENSMUSG00000073898.3 ENSMUSG00000073898 ENSMUST00000098139 Olfr713 protein_coding Interval_151276 chr7 120607069 120609018 + 0 NA intron (ENSMUSG00000109113.1, intron 5 of 8) lincRNA-intron (ENSMUSG00000109113.1, intron 5 of 8) 10418 ENSMUSG00000044141.8 ENSMUSG00000044141 ENSMUST00000123576 E130201H02Rik processed_pseudogene Interval_35714 chr12 28594750 28595573 + 0 NA intron (ENSMUSG00000036655.8, intron 6 of 6) protein_coding-intron (ENSMUSG00000036655.8, intron 6 of 6) -12646 ENSMUSG00000020636.14 ENSMUSG00000020636 ENSMUST00000020965 Allc protein_coding Interval_731 chr1 10238717 10239497 + 0 NA Intergenic Intergenic -40305 ENSMUSG00000102556.1 ENSMUSG00000102556 ENSMUST00000192111 Gm37569 TEC Interval_49790 chr13 115164586 115165098 + 0 NA promoter-TSS (ENSMUSG00000114872.1) processed_pseudogene-promoter-TSS (ENSMUSG00000114872.1) -22 ENSMUSG00000114872.1 ENSMUSG00000114872 ENSMUST00000225121 Gm18759 processed_pseudogene Interval_110711 chr4 6718361 6719784 + 0 NA intron (ENSMUSG00000041272.11, intron 5 of 8) protein_coding-intron (ENSMUSG00000041272.11, intron 5 of 8) 30903 ENSMUSG00000086052.1 ENSMUSG00000086052 ENSMUST00000137749 Gm11802 antisense Interval_44383 chr13 44484494 44485512 + 0 NA exon (ENSMUSG00000113010.1, exon 3 of 4) lincRNA-exon (ENSMUSG00000113010.1, exon 3 of 4) 19545 ENSMUSG00000113010.1 ENSMUSG00000113010 ENSMUST00000222236 Gm34084 lincRNA Interval_53572 chr14 59449582 59449773 + 0 NA intron (ENSMUSG00000021981.10, intron 2 of 3) protein_coding-intron (ENSMUSG00000021981.10, intron 1 of 10) 8696 ENSMUSG00000021981.10 ENSMUSG00000021981 ENSMUST00000224893 Cab39l protein_coding Interval_41010 chr12 110580261 110581553 + 0 NA TTS (ENSMUSG00000017843.14) protein_coding-TTS (ENSMUSG00000017843.14) -9605 ENSMUSG00000113361.1 ENSMUSG00000113361 ENSMUST00000221143 B930059L03Rik lincRNA Interval_37430 chr12 68511695 68511887 + 0 NA TTS (ENSMUSG00000113433.1) lincRNA-TTS (ENSMUSG00000113433.1) -10585 ENSMUSG00000113561.1 ENSMUSG00000113561 ENSMUST00000222149 Gm19176 processed_pseudogene Interval_134024 chr6 17815509 17816171 + 0 NA intron (ENSMUSG00000029534.17, intron 1 of 15) protein_coding-intron (ENSMUSG00000029534.17, intron 1 of 14) 19345 ENSMUSG00000097700.1 ENSMUSG00000097700 ENSMUST00000181312 Gm26738 antisense Interval_46109 chr13 61803654 61804733 + 0 NA promoter-TSS (ENSMUSG00000096212.1) miRNA-promoter-TSS (ENSMUSG00000096212.1) 55 ENSMUSG00000096212.1 ENSMUSG00000096212 ENSMUST00000102295 Gm23739 miRNA Interval_160697 chr8 111662582 111662923 + 0 NA intron (ENSMUSG00000055835.10, intron 2 of 3) protein_coding-intron (ENSMUSG00000055835.10, intron 2 of 3) 19272 ENSMUSG00000055835.10 ENSMUSG00000055835 ENSMUST00000211926 Zfp1 protein_coding Interval_134608 chr6 29925620 29926060 + 0 NA intron (ENSMUSG00000039629.14, intron 4 of 20) protein_coding-intron (ENSMUSG00000039629.14, intron 4 of 20) 8828 ENSMUSG00000039629.14 ENSMUSG00000039629 ENSMUST00000046028 Strip2 protein_coding Interval_47105 chr13 75797564 75798270 + 0 NA Intergenic Intergenic -4789 ENSMUSG00000113409.1 ENSMUSG00000113409 ENSMUST00000223406 Gm8288 processed_pseudogene Interval_142657 chr6 144802150 144803172 + 0 NA TTS (ENSMUSG00000087850.1) snoRNA-TTS (ENSMUSG00000087850.1) 971 ENSMUSG00000087850.1 ENSMUSG00000087850 ENSMUST00000157225 Gm22792 snoRNA Interval_118440 chr4 131619365 131619569 + 0 NA Intergenic Intergenic 52674 ENSMUSG00000087171.1 ENSMUSG00000087171 ENSMUST00000138697 Gm12962 lincRNA Interval_134708 chr6 30549210 30549738 + 0 NA TTS (ENSMUSG00000071553.10) protein_coding-TTS (ENSMUSG00000071553.10) 4989 ENSMUSG00000071553.10 ENSMUSG00000071553 ENSMUST00000144282 Cpa2 protein_coding Interval_22451 chr11 10329079 10330857 + 0 NA Intergenic Intergenic 47114 ENSMUSG00000084045.1 ENSMUSG00000084045 ENSMUST00000118697 Gm11997 processed_pseudogene Interval_156990 chr8 63909907 63910173 + 0 NA Intergenic Intergenic -23124 ENSMUSG00000109818.1 ENSMUSG00000109818 ENSMUST00000210516 Gm35713 processed_pseudogene Interval_58338 chr15 32623105 32623916 + 0 NA promoter-TSS (ENSMUSG00000115063.1) antisense-promoter-TSS (ENSMUSG00000115063.1) -5 ENSMUSG00000115063.1 ENSMUSG00000115063 ENSMUST00000227807 4930465K09Rik antisense Interval_15931 chr10 59410363 59410716 + 0 NA promoter-TSS (ENSMUSG00000009646.13) protein_coding-promoter-TSS (ENSMUSG00000009646.13) -488 ENSMUSG00000009646.13 ENSMUSG00000009646 ENSMUST00000162643 Pla2g12b protein_coding Interval_84460 chr19 11196291 11197758 + 0 NA promoter-TSS (ENSMUSG00000057240.14) protein_coding-promoter-TSS (ENSMUSG00000057240.14) 207 ENSMUSG00000097091.1 ENSMUSG00000097091 ENSMUST00000181137 4930526L06Rik antisense Interval_23353 chr11 21714891 21715308 + 0 NA intron (ENSMUSG00000020319.9, intron 10 of 17) protein_coding-intron (ENSMUSG00000020319.9, intron 10 of 17) 19970 ENSMUSG00000020319.9 ENSMUSG00000020319 ENSMUST00000128794 Wdpcp protein_coding Interval_79442 chr18 31904542 31904744 + 0 NA intron (ENSMUSG00000024400.16, intron 1 of 1) protein_coding-intron (ENSMUSG00000024400.16, intron 21 of 21) 7181 ENSMUSG00000044982.7 ENSMUSG00000044982 ENSMUST00000054984 Sft2d3 protein_coding Interval_133169 chr5 150290773 150291505 + 0 NA intron (ENSMUSG00000106719.1, intron 3 of 3) protein_coding-intron (ENSMUSG00000056602.12, intron 1 of 60) -4249 ENSMUSG00000056602.12 ENSMUSG00000056602 ENSMUST00000201628 Fry protein_coding Interval_10904 chr1 176834940 176836397 + 0 NA promoter-TSS (ENSMUSG00000103367.1) processed_pseudogene-promoter-TSS (ENSMUSG00000103367.1) -56 ENSMUSG00000103367.1 ENSMUSG00000103367 ENSMUST00000194617 Gm38158 processed_pseudogene Interval_45243 chr13 53454924 53455329 + 0 NA TTS (ENSMUSG00000107008.3) lincRNA-TTS (ENSMUSG00000107008.3) 17948 ENSMUSG00000021469.9 ENSMUSG00000021469 ENSMUST00000188606 Msx2 protein_coding Interval_145649 chr7 36724061 36725002 + 0 NA exon (ENSMUSG00000102516.1, exon 1 of 1) TEC-exon (ENSMUSG00000102516.1, exon 1 of 1) -2646 ENSMUSG00000104420.1 ENSMUSG00000104420 ENSMUST00000194646 E230020A03Rik TEC Interval_128566 chr5 114061663 114061891 + 0 NA intron (ENSMUSG00000042078.14, intron 5 of 6) protein_coding-intron (ENSMUSG00000042078.14, intron 4 of 15) -3737 ENSMUSG00000029592.11 ENSMUSG00000029592 ENSMUST00000198457 Usp30 protein_coding Interval_116530 chr4 115062709 115064084 + 0 NA exon (ENSMUSG00000028717.12, exon 3 of 5) protein_coding-exon (ENSMUSG00000028717.12, exon 3 of 5) 3888 ENSMUSG00000028717.12 ENSMUSG00000028717 ENSMUST00000162489 Tal1 protein_coding Interval_39832 chr12 98833166 98834322 + 0 NA TTS (ENSMUSG00000113102.1) TEC-TTS (ENSMUSG00000113102.1) 1931 ENSMUSG00000113102.1 ENSMUSG00000113102 ENSMUST00000221662 A930040O22Rik TEC Interval_80599 chr18 44530227 44530978 + 0 NA intron (ENSMUSG00000071856.10, intron 2 of 16) protein_coding-intron (ENSMUSG00000071856.10, intron 4 of 18) -131501 ENSMUSG00000097610.2 ENSMUSG00000097610 ENSMUST00000202771 A930012L18Rik antisense Interval_161271 chr8 119423579 119424748 + 0 NA Intergenic Intergenic -12986 ENSMUSG00000074063.10 ENSMUSG00000074063 ENSMUST00000144381 Osgin1 protein_coding Interval_170083 chr9 104300515 104301362 + 0 NA exon (ENSMUSG00000032561.15, exon 10 of 11) protein_coding-exon (ENSMUSG00000032561.15, exon 10 of 11) 36810 ENSMUSG00000032561.15 ENSMUSG00000032561 ENSMUST00000215852 Acpp protein_coding Interval_74558 chr17 53387805 53389972 + 0 NA Intergenic Intergenic 28961 ENSMUSG00000117241.1 ENSMUSG00000117241 ENSMUST00000232913 Gm9214 processed_pseudogene Interval_58805 chr15 38177182 38178254 + 0 NA Intergenic Intergenic 24499 ENSMUSG00000115680.1 ENSMUSG00000115680 ENSMUST00000227576 Gm35167 lincRNA Interval_86162 chr19 37197697 37198645 + 0 NA promoter-TSS (ENSMUSG00000039652.16) protein_coding-promoter-TSS (ENSMUSG00000039652.16) -9405 ENSMUSG00000023307.14 ENSMUSG00000023307 ENSMUST00000128530 Marchf5 protein_coding Interval_134784 chr6 31518889 31519491 + 0 NA TTS (ENSMUSG00000025608.9) protein_coding-TTS (ENSMUSG00000025608.9) 5121 ENSMUSG00000025608.9 ENSMUSG00000025608 ENSMUST00000136877 Podxl protein_coding Interval_68725 chr16 85079398 85080691 + 0 NA promoter-TSS (ENSMUSG00000115469.1) antisense-promoter-TSS (ENSMUSG00000115469.1) -67 ENSMUSG00000115469.1 ENSMUSG00000115469 ENSMUST00000227918 Gm49227 antisense Interval_93056 chr2 69858108 69858310 + 0 NA Intergenic Intergenic -3353 ENSMUSG00000068882.13 ENSMUSG00000068882 ENSMUST00000132603 Ssb protein_coding Interval_84251 chr19 9019144 9020139 + 0 NA TTS (ENSMUSG00000069833.13) protein_coding-TTS (ENSMUSG00000069833.13) 30357 ENSMUSG00000069833.13 ENSMUSG00000069833 ENSMUST00000237033 Ahnak protein_coding Interval_62108 chr15 86774518 86774732 + 0 NA Intergenic Intergenic 36799 ENSMUSG00000116171.1 ENSMUSG00000116171 ENSMUST00000230110 4930543I03Rik lincRNA Interval_68767 chr16 85852631 85852834 + 0 NA Intergenic Intergenic 33521 ENSMUSG00000116586.1 ENSMUSG00000116586 ENSMUST00000231357 4930556C24Rik lincRNA Interval_149152 chr7 95381386 95381897 + 0 NA Intergenic Intergenic 60816 ENSMUSG00000065875.1 ENSMUSG00000065875 ENSMUST00000083941 Gm25684 snRNA Interval_155834 chr8 39902087 39902430 + 0 NA Intergenic Intergenic -114456 ENSMUSG00000109815.1 ENSMUSG00000109815 ENSMUST00000209880 Gm7082 processed_pseudogene Interval_22415 chr11 9843282 9843983 + 0 NA Intergenic Intergenic -106011 ENSMUSG00000081629.1 ENSMUSG00000081629 ENSMUST00000117907 Eif3s6-ps1 processed_pseudogene Interval_90456 chr2 30577153 30578645 + 0 NA Intergenic Intergenic -27318 ENSMUSG00000047363.4 ENSMUSG00000047363 ENSMUST00000129719 Cstad protein_coding Interval_20640 chr10 119839561 119840263 + 0 NA intron (ENSMUSG00000085418.1, intron 4 of 4) protein_coding-intron (ENSMUSG00000034813.18, intron 1 of 22) 12365 ENSMUSG00000085418.1 ENSMUSG00000085418 ENSMUST00000135940 Grip1os1 antisense Interval_116624 chr4 116143762 116144918 + 0 NA exon (ENSMUSG00000028701.4, exon 1 of 2) protein_coding-exon (ENSMUSG00000028701.4, exon 1 of 2) 6998 ENSMUSG00000028701.4 ENSMUSG00000028701 ENSMUST00000135982 Lurap1 protein_coding Interval_33192 chr11 115135673 115135980 + 0 NA intron (ENSMUSG00000020732.13, intron 1 of 1) protein_coding-intron (ENSMUSG00000020732.13, intron 1 of 8) -9035 ENSMUSG00000047798.15 ENSMUSG00000047798 ENSMUST00000149335 Cd300lf protein_coding Interval_16943 chr10 70041561 70042013 + 0 NA Intergenic Intergenic -133224 ENSMUSG00000048701.13 ENSMUSG00000048701 ENSMUST00000135607 Ccdc6 protein_coding Interval_15200 chr10 43305826 43306913 + 0 NA intron (ENSMUSG00000038240.13, intron 2 of 2) protein_coding-intron (ENSMUSG00000038240.13, intron 2 of 7) -12991 ENSMUSG00000089673.1 ENSMUSG00000089673 ENSMUST00000159442 Gm16546 processed_pseudogene Interval_89925 chr2 26518952 26519495 + 0 NA Intergenic Intergenic -39402 ENSMUSG00000082864.1 ENSMUSG00000082864 ENSMUST00000121427 Gm13358 processed_pseudogene Interval_65490 chr16 22719253 22719926 + 0 NA Intergenic Intergenic -33395 ENSMUSG00000116603.1 ENSMUSG00000116603 ENSMUST00000232508 Gm8118 processed_pseudogene Interval_38416 chr12 78874729 78875561 + 0 NA intron (ENSMUSG00000021116.10, intron 2 of 4) protein_coding-intron (ENSMUSG00000021116.10, intron 3 of 7) 13015 ENSMUSG00000021116.10 ENSMUSG00000021116 ENSMUST00000220382 Eif2s1 protein_coding Interval_166816 chr9 62930613 62931188 + 0 NA intron (ENSMUSG00000032405.10, intron 2 of 4) protein_coding-intron (ENSMUSG00000032405.10, intron 2 of 13) 57024 ENSMUSG00000032405.10 ENSMUSG00000032405 ENSMUST00000215455 Pias1 protein_coding Interval_134988 chr6 34350594 34351902 + 0 NA Intergenic Intergenic -4867 ENSMUSG00000029762.6 ENSMUSG00000029762 ENSMUST00000133370 Akr1b8 protein_coding Interval_1370 chr1 21052078 21052595 + 0 NA intron (ENSMUSG00000041779.5, intron 1 of 10) protein_coding-intron (ENSMUSG00000041779.5, intron 1 of 10) -8680 ENSMUSG00000041779.5 ENSMUSG00000041779 ENSMUST00000187210 Tram2 protein_coding Interval_170853 chr9 111233737 111235847 + 0 NA intron (ENSMUSG00000032498.9, intron 13 of 17) protein_coding-intron (ENSMUSG00000032498.9, intron 14 of 18) -4156 ENSMUSG00000032498.9 ENSMUSG00000032498 ENSMUST00000134316 Mlh1 protein_coding Interval_78396 chr18 12464649 12464858 + 0 NA intron (ENSMUSG00000024421.16, intron 23 of 74) protein_coding-intron (ENSMUSG00000024421.16, intron 23 of 74) 34709 ENSMUSG00000100090.1 ENSMUSG00000100090 ENSMUST00000187766 Gm29199 processed_pseudogene Interval_55764 chr14 99778513 99779180 + 0 NA intron (ENSMUSG00000103188.1, intron 1 of 1) TEC-intron (ENSMUSG00000103188.1, intron 1 of 1) -5038 ENSMUSG00000065238.1 ENSMUSG00000065238 ENSMUST00000083304 Gm22970 snRNA Interval_81634 chr18 62645570 62646252 + 0 NA promoter-TSS (ENSMUSG00000044176.12) protein_coding-promoter-TSS (ENSMUSG00000044176.12) -16197 ENSMUSG00000044176.12 ENSMUSG00000044176 ENSMUST00000163259 Spink10 protein_coding Interval_130113 chr5 124364355 124365346 + 0 NA Intergenic Intergenic -1768 ENSMUSG00000029394.11 ENSMUSG00000029394 ENSMUST00000196910 Cdk2ap1 protein_coding Interval_171153 chr9 114794423 114794671 + 0 NA intron (ENSMUSG00000041012.4, intron 2 of 3) protein_coding-intron (ENSMUSG00000041012.4, intron 2 of 3) 14447 ENSMUSG00000052724.7 ENSMUSG00000052724 ENSMUST00000150678 Gm9888 antisense Interval_60350 chr15 73117953 73118442 + 0 NA intron (ENSMUSG00000036698.11, intron 13 of 18) protein_coding-intron (ENSMUSG00000036698.11, intron 13 of 18) 27785 ENSMUSG00000068391.8 ENSMUSG00000068391 ENSMUST00000137698 Chrac1 protein_coding Interval_29133 chr11 80504689 80505181 + 0 NA intron (ENSMUSG00000035441.14, intron 21 of 21) protein_coding-intron (ENSMUSG00000035441.14, intron 21 of 21) 4171 ENSMUSG00000085078.1 ENSMUSG00000085078 ENSMUST00000133400 C030013C21Rik sense_intronic Interval_36824 chr12 54404916 54405712 + 0 NA exon (ENSMUSG00000112053.1, exon 4 of 4) lincRNA-exon (ENSMUSG00000112053.1, exon 4 of 4) 5138 ENSMUSG00000112053.1 ENSMUSG00000112053 ENSMUST00000217924 Gm46328 lincRNA Interval_163735 chr9 25061568 25061777 + 0 NA intron (ENSMUSG00000111751.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000111751.1, intron 1 of 1) 4622 ENSMUSG00000111751.1 ENSMUSG00000111751 ENSMUST00000215876 Gm48256 lincRNA Interval_56550 chr14 120295259 120297352 + 0 NA intron (ENSMUSG00000022139.17, intron 1 of 1) protein_coding-intron (ENSMUSG00000022139.17, intron 1 of 8) -82936 ENSMUSG00000022139.17 ENSMUSG00000022139 ENSMUST00000227153 Mbnl2 protein_coding Interval_157706 chr8 72413756 72414257 + 0 NA intron (ENSMUSG00000006276.10, intron 1 of 21) protein_coding-intron (ENSMUSG00000006276.10, intron 1 of 23) 7432 ENSMUSG00000006276.10 ENSMUSG00000006276 ENSMUST00000211977 Eps15l1 protein_coding Interval_120899 chr4 151415183 151415999 + 0 NA intron (ENSMUSG00000014592.21, intron 5 of 24) protein_coding-intron (ENSMUSG00000014592.21, intron 5 of 23) 39121 ENSMUSG00000085593.1 ENSMUSG00000085593 ENSMUST00000129097 4930589P08Rik antisense Interval_39754 chr12 96995235 96995729 + 0 NA Intergenic Intergenic -72424 ENSMUSG00000043483.4 ENSMUSG00000043483 ENSMUST00000052882 Gm6863 processed_pseudogene Interval_125600 chr5 72480689 72481044 + 0 NA intron (ENSMUSG00000005220.10, intron 1 of 20) protein_coding-intron (ENSMUSG00000005220.10, intron 1 of 21) 16238 ENSMUSG00000093771.1 ENSMUSG00000093771 ENSMUST00000176972 AU023070 lincRNA Interval_15169 chr10 43036747 43037861 + 0 NA intron (ENSMUSG00000111171.1, intron 1 of 2) protein_coding-intron (ENSMUSG00000038248.8, intron 5 of 6) 2311 ENSMUSG00000111171.1 ENSMUSG00000111171 ENSMUST00000213469 Gm47815 antisense Interval_76601 chr17 82305628 82306820 + 0 NA Intergenic Intergenic -49169 ENSMUSG00000117643.1 ENSMUSG00000117643 ENSMUST00000234825 Gm9390 processed_pseudogene Interval_140818 chr6 121561114 121561350 + 0 NA TTS (ENSMUSG00000107752.1) processed_pseudogene-TTS (ENSMUSG00000107752.1) 1031 ENSMUSG00000107752.1 ENSMUSG00000107752 ENSMUST00000205095 Gm43934 processed_pseudogene Interval_124410 chr5 45638643 45640255 + 0 NA promoter-TSS (ENSMUSG00000097825.5) antisense-promoter-TSS (ENSMUSG00000097825.5) 68 ENSMUSG00000097825.5 ENSMUSG00000097825 ENSMUST00000200144 9630001P10Rik antisense Interval_23925 chr11 28382766 28383059 + 0 NA Intergenic Intergenic 22550 ENSMUSG00000084905.1 ENSMUSG00000084905 ENSMUST00000152849 Gm12081 antisense Interval_113156 chr4 48679903 48681190 + 0 NA Intergenic Intergenic 5390 ENSMUSG00000080850.1 ENSMUSG00000080850 ENSMUST00000117162 Gm12439 processed_pseudogene Interval_159857 chr8 104394894 104396265 + 0 NA exon (ENSMUSG00000096188.1, exon 1 of 4) protein_coding-exon (ENSMUSG00000096188.1, exon 1 of 4) 228 ENSMUSG00000096188.1 ENSMUSG00000096188 ENSMUST00000179802 Cmtm4 protein_coding Interval_34938 chr12 14151086 14152707 + 0 NA promoter-TSS (ENSMUSG00000020607.7) protein_coding-promoter-TSS (ENSMUSG00000020607.7) -547 ENSMUSG00000020607.7 ENSMUSG00000020607 ENSMUST00000221405 Lratd1 protein_coding Interval_112795 chr4 45040899 45041154 + 0 NA intron (ENSMUSG00000048232.12, intron 8 of 9) protein_coding-intron (ENSMUSG00000048232.12, intron 9 of 10) 9764 ENSMUSG00000028318.14 ENSMUSG00000028318 ENSMUST00000153252 Polr1e protein_coding Interval_46020 chr13 60175885 60178724 + 0 NA promoter-TSS (ENSMUSG00000052957.8) protein_coding-promoter-TSS (ENSMUSG00000052957.8) -363 ENSMUSG00000052957.8 ENSMUSG00000052957 ENSMUST00000223933 Gas1 protein_coding Interval_28712 chr11 77874753 77875595 + 0 NA Intergenic Intergenic 9370 ENSMUSG00000017453.4 ENSMUSG00000017453 ENSMUST00000155401 Pipox protein_coding Interval_150231 chr7 108616614 108617335 + 0 NA Intergenic Intergenic -4840 ENSMUSG00000061000.1 ENSMUSG00000061000 ENSMUST00000080014 Olfr507 protein_coding Interval_607 chr1 8824551 8824864 + 0 NA intron (ENSMUSG00000025909.16, intron 3 of 8) protein_coding-intron (ENSMUSG00000025909.16, intron 3 of 19) 8569 ENSMUSG00000076135.1 ENSMUSG00000076135 ENSMUST00000102181 Gm24276 miRNA Interval_148146 chr7 79486467 79487971 + 0 NA Intergenic Intergenic -12819 ENSMUSG00000097023.8 ENSMUSG00000097023 ENSMUST00000182125 Mir9-3hg lincRNA Interval_104053 chr3 57731943 57733042 + 0 NA Intergenic Intergenic -3628 ENSMUSG00000036503.13 ENSMUSG00000036503 ENSMUST00000197783 Rnf13 protein_coding Interval_115858 chr4 105265987 105266269 + 0 NA Intergenic Intergenic 108781 ENSMUSG00000028517.8 ENSMUSG00000028517 ENSMUST00000064139 Plpp3 protein_coding Interval_74451 chr17 50737501 50737867 + 0 NA intron (ENSMUSG00000023923.10, intron 21 of 21) protein_coding-intron (ENSMUSG00000023923.10, intron 21 of 21) 38996 ENSMUSG00000044645.8 ENSMUSG00000044645 ENSMUST00000061681 Gm7334 processed_pseudogene Interval_123680 chr5 34473577 34473767 + 0 NA TTS (ENSMUSG00000107227.1) TEC-TTS (ENSMUSG00000107227.1) 4008 ENSMUSG00000107227.1 ENSMUSG00000107227 ENSMUST00000201811 Gm42559 TEC Interval_49207 chr13 109477393 109477748 + 0 NA intron (ENSMUSG00000021699.17, intron 1 of 14) protein_coding-intron (ENSMUSG00000021699.17, intron 1 of 14) 152826 ENSMUSG00000076946.2 ENSMUSG00000076946 ENSMUST00000103758 Mir582 miRNA Interval_84280 chr19 9697539 9697734 + 0 NA Intergenic Intergenic 90532 ENSMUSG00000100141.1 ENSMUSG00000100141 ENSMUST00000189515 Gm6445 unprocessed_pseudogene Interval_167467 chr9 69626420 69627142 + 0 NA Intergenic Intergenic -27027 ENSMUSG00000111096.1 ENSMUSG00000111096 ENSMUST00000215589 Gm47203 processed_pseudogene Interval_120223 chr4 144462274 144462550 + 0 NA intron (ENSMUSG00000078507.1, intron 1 of 3) protein_coding-intron (ENSMUSG00000078507.1, intron 1 of 3) 1344 ENSMUSG00000078507.1 ENSMUSG00000078507 ENSMUST00000105749 Aadacl3 protein_coding Interval_83566 chr18 89768356 89770071 + 0 NA exon (ENSMUSG00000073514.4, exon 1 of 8) protein_coding-exon (ENSMUSG00000073514.4, exon 1 of 8) 36208 ENSMUSG00000092792.1 ENSMUSG00000092792 ENSMUST00000175051 Gm22694 miRNA Interval_98193 chr2 149720931 149721181 + 0 NA Intergenic Intergenic -22119 ENSMUSG00000081494.1 ENSMUSG00000081494 ENSMUST00000118417 Gm14130 processed_pseudogene Interval_480 chr1 6195633 6196220 + 0 NA Intergenic Intergenic 19367 ENSMUSG00000090031.2 ENSMUSG00000090031 ENSMUST00000097832 4732440D04Rik antisense Interval_46557 chr13 67127606 67128852 + 0 NA promoter-TSS (ENSMUSG00000057396.7) protein_coding-promoter-TSS (ENSMUSG00000057396.7) 2 ENSMUSG00000057396.7 ENSMUSG00000057396 ENSMUST00000052716 Zfp759 protein_coding Interval_105941 chr3 90207563 90210428 + 0 NA intron (ENSMUSG00000027939.11, intron 37 of 39) protein_coding-intron (ENSMUSG00000027939.11, intron 37 of 39) 4628 ENSMUSG00000090733.6 ENSMUSG00000090733 ENSMUST00000196196 Rps27 protein_coding Interval_52869 chr14 51358087 51358896 + 0 NA promoter-TSS (ENSMUSG00000115280.1) processed_pseudogene-promoter-TSS (ENSMUSG00000115280.1) -112 ENSMUSG00000115280.1 ENSMUSG00000115280 ENSMUST00000228571 Gm7107 processed_pseudogene Interval_158625 chr8 84837225 84837949 + 0 NA TTS (ENSMUSG00000003813.15) protein_coding-TTS (ENSMUSG00000003813.15) 1093 ENSMUSG00000003813.15 ENSMUSG00000003813 ENSMUST00000125711 Rad23a protein_coding Interval_88634 chr2 7974672 7975524 + 0 NA Intergenic Intergenic 172767 ENSMUSG00000083269.1 ENSMUSG00000083269 ENSMUST00000118295 Gm13254 processed_pseudogene Interval_78226 chr18 10374017 10374653 + 0 NA intron (ENSMUSG00000042942.18, intron 1 of 8) protein_coding-intron (ENSMUSG00000042942.18, intron 1 of 32) -8262 ENSMUSG00000105513.1 ENSMUSG00000105513 ENSMUST00000198810 Gm44409 miRNA Interval_15376 chr10 45170795 45171079 + 0 NA Intergenic Intergenic -7161 ENSMUSG00000019848.14 ENSMUSG00000019848 ENSMUST00000161803 Popdc3 protein_coding Interval_28867 chr11 78871034 78872962 + 0 NA Intergenic Intergenic 45414 ENSMUSG00000072640.11 ENSMUSG00000072640 ENSMUST00000100748 Lyrm9 protein_coding Interval_46671 chr13 68572844 68574679 + 0 NA intron (ENSMUSG00000034617.7, intron 4 of 13) protein_coding-intron (ENSMUSG00000034617.7, intron 5 of 14) 8343 ENSMUSG00000034617.7 ENSMUSG00000034617 ENSMUST00000221800 Mtrr protein_coding Interval_136932 chr6 64688781 64688993 + 0 NA intron (ENSMUSG00000071424.10, intron 1 of 1) protein_coding-intron (ENSMUSG00000071424.10, intron 1 of 1) 25699 ENSMUSG00000071424.10 ENSMUSG00000071424 ENSMUST00000210324 Grid2 protein_coding Interval_75789 chr17 71380949 71381211 + 0 NA intron (ENSMUSG00000024054.14, intron 30 of 47) protein_coding-intron (ENSMUSG00000024054.14, intron 30 of 47) 12204 ENSMUSG00000103558.1 ENSMUSG00000103558 ENSMUST00000195774 Gm38220 TEC Interval_92692 chr2 62663909 62664903 + 0 NA exon (ENSMUSG00000026893.4, exon 1 of 8) protein_coding-exon (ENSMUSG00000026893.4, exon 1 of 8) 5964 ENSMUSG00000081817.1 ENSMUSG00000081817 ENSMUST00000120183 Gm13590 processed_pseudogene Interval_77264 chr17 87650215 87650453 + 0 NA intron (ENSMUSG00000045394.9, intron 8 of 8) protein_coding-intron (ENSMUSG00000045394.9, intron 9 of 9) 14355 ENSMUSG00000045394.9 ENSMUSG00000045394 ENSMUST00000234623 Epcam protein_coding Interval_146879 chr7 54555556 54555890 + 0 NA Intergenic Intergenic 55475 ENSMUSG00000109050.1 ENSMUSG00000109050 ENSMUST00000207666 Gm6290 processed_pseudogene Interval_88617 chr2 6827297 6827921 + 0 NA intron (ENSMUSG00000002107.18, intron 2 of 13) protein_coding-intron (ENSMUSG00000002107.18, intron 3 of 15) 44988 ENSMUSG00000002107.18 ENSMUSG00000002107 ENSMUST00000182037 Celf2 protein_coding Interval_154270 chr8 13947243 13949236 + 0 NA Intergenic Intergenic 21260 ENSMUSG00000038365.8 ENSMUSG00000038365 ENSMUST00000209310 Fbxo25 protein_coding Interval_149219 chr7 96379154 96379520 + 0 NA intron (ENSMUSG00000048078.16, intron 2 of 2) protein_coding-intron (ENSMUSG00000048078.16, intron 2 of 32) -37373 ENSMUSG00000085751.1 ENSMUSG00000085751 ENSMUST00000137193 Gm15412 antisense Interval_42365 chr13 12394766 12395864 + 0 NA promoter-TSS (ENSMUSG00000050244.9) protein_coding-promoter-TSS (ENSMUSG00000050244.9) 288 ENSMUSG00000050244.9 ENSMUSG00000050244 ENSMUST00000221616 Heatr1 protein_coding Interval_156567 chr8 52255941 52256340 + 0 NA Intergenic Intergenic 23331 ENSMUSG00000098231.1 ENSMUSG00000098231 ENSMUST00000182090 Gm6463 processed_pseudogene Interval_89121 chr2 16838498 16839486 + 0 NA Intergenic Intergenic 121026 ENSMUSG00000076950.1 ENSMUSG00000076950 ENSMUST00000103762 Gm24933 miRNA Interval_39781 chr12 98210141 98210374 + 0 NA intron (ENSMUSG00000021003.10, intron 4 of 5) protein_coding-intron (ENSMUSG00000021003.10, intron 14 of 16) 6271 ENSMUSG00000021003.10 ENSMUSG00000021003 ENSMUST00000221322 Galc protein_coding Interval_74392 chr17 49883322 49883914 + 0 NA intron (ENSMUSG00000023999.14, intron 16 of 22) protein_coding-intron (ENSMUSG00000023999.14, intron 16 of 22) 12349 ENSMUSG00000090227.1 ENSMUSG00000090227 ENSMUST00000159471 Gm16554 antisense Interval_156430 chr8 48119238 48119584 + 0 NA intron (ENSMUSG00000031562.15, intron 3 of 3) protein_coding-intron (ENSMUSG00000031562.15, intron 3 of 5) 9249 ENSMUSG00000031562.15 ENSMUSG00000031562 ENSMUST00000174379 Dctd protein_coding Interval_26748 chr11 60195077 60195336 + 0 NA intron (ENSMUSG00000062115.15, intron 3 of 4) protein_coding-intron (ENSMUSG00000062115.15, intron 4 of 5) 5411 ENSMUSG00000098547.1 ENSMUSG00000098547 ENSMUST00000183719 Mir6921 miRNA Interval_67457 chr16 48973553 48973753 + 0 NA intron (ENSMUSG00000064061.13, intron 7 of 31) protein_coding-intron (ENSMUSG00000064061.13, intron 7 of 30) -30551 ENSMUSG00000065667.1 ENSMUSG00000065667 ENSMUST00000083733 Gm22576 snRNA Interval_87781 chr19 55827701 55828889 + 0 NA intron (ENSMUSG00000024985.20, intron 5 of 14) protein_coding-intron (ENSMUSG00000024985.20, intron 4 of 11) -13377 ENSMUSG00000099746.1 ENSMUSG00000099746 ENSMUST00000190974 Ppnr sense_intronic Interval_63345 chr15 100463704 100464035 + 0 NA intron (ENSMUSG00000097827.1, intron 1 of 1) bidirectional_promoter_lncRNA-intron (ENSMUSG00000097827.1, intron 1 of 1) 4822 ENSMUSG00000097827.1 ENSMUSG00000097827 ENSMUST00000180953 5330439K02Rik bidirectional_promoter_lncRNA Interval_123684 chr5 34487584 34487846 + 0 NA exon (ENSMUSG00000106678.1, exon 1 of 1) TEC-exon (ENSMUSG00000106678.1, exon 1 of 1) 401 ENSMUSG00000106678.1 ENSMUSG00000106678 ENSMUST00000200867 Gm43457 TEC Interval_173806 chrX 104618661 104619380 + 0 NA intron (ENSMUSG00000033906.5, intron 2 of 11) protein_coding-intron (ENSMUSG00000033906.5, intron 2 of 11) 2155 ENSMUSG00000089171.1 ENSMUSG00000089171 ENSMUST00000158546 Gm22430 snoRNA Interval_29854 chr11 87335134 87335383 + 0 NA intron (ENSMUSG00000046442.4, intron 1 of 3) protein_coding-intron (ENSMUSG00000046442.4, intron 1 of 6) -16459 ENSMUSG00000088001.1 ENSMUSG00000088001 ENSMUST00000157376 Gm22883 snRNA Interval_123478 chr5 32792023 32792517 + 0 NA TTS (ENSMUSG00000054280.14) protein_coding-TTS (ENSMUSG00000054280.14) 8695 ENSMUSG00000105429.1 ENSMUSG00000105429 ENSMUST00000198236 Gm43692 TEC Interval_82071 chr18 67516845 67519120 + 0 NA intron (ENSMUSG00000024533.17, intron 8 of 16) protein_coding-intron (ENSMUSG00000024533.17, intron 6 of 14) -20253 ENSMUSG00000024533.17 ENSMUSG00000024533 ENSMUST00000226000 Spire1 protein_coding Interval_70367 chr17 9145434 9146171 + 0 NA Intergenic Intergenic 22034 ENSMUSG00000097049.1 ENSMUSG00000097049 ENSMUST00000181618 6530411M01Rik lincRNA Interval_23895 chr11 27833883 27834070 + 0 NA Intergenic Intergenic -49136 ENSMUSG00000084064.1 ENSMUSG00000084064 ENSMUST00000112483 Gm12079 processed_pseudogene Interval_42474 chr13 13968403 13969455 + 0 NA intron (ENSMUSG00000096192.2, intron 1 of 2) protein_coding-intron (ENSMUSG00000039242.10, intron 2 of 11) 2408 ENSMUSG00000096192.2 ENSMUSG00000096192 ENSMUST00000221021 Gm18856 transcribed_processed_pseudogene Interval_165604 chr9 50171972 50172377 + 0 NA Intergenic Intergenic 14871 ENSMUSG00000098012.1 ENSMUSG00000098012 ENSMUST00000182240 Gm8907 processed_pseudogene Interval_154436 chr8 16977949 16978401 + 0 NA intron (ENSMUSG00000060924.15, intron 3 of 10) protein_coding-intron (ENSMUSG00000060924.15, intron 3 of 69) -61993 ENSMUSG00000109625.1 ENSMUSG00000109625 ENSMUST00000210736 3110080E11Rik TEC Interval_137448 chr6 72519814 72520631 + 0 NA promoter-TSS (ENSMUSG00000052631.15) protein_coding-promoter-TSS (ENSMUSG00000052631.15) -186 ENSMUSG00000052631.15 ENSMUSG00000052631 ENSMUST00000159577 Sh2d6 protein_coding Interval_85691 chr19 29683902 29685018 + 0 NA Intergenic Intergenic -13474 ENSMUSG00000024806.4 ENSMUSG00000024806 ENSMUST00000235954 Mlana protein_coding Interval_139159 chr6 96552495 96552717 + 0 NA intron (ENSMUSG00000059187.12, intron 3 of 4) protein_coding-intron (ENSMUSG00000059187.12, intron 2 of 3) 8258 ENSMUSG00000077598.1 ENSMUSG00000077598 ENSMUST00000104410 Gm26011 snRNA Interval_83978 chr19 5912178 5913369 + 0 NA promoter-TSS (ENSMUSG00000024826.15) protein_coding-promoter-TSS (ENSMUSG00000024826.15) -214 ENSMUSG00000110156.2 ENSMUSG00000110156 ENSMUST00000235359 Gm42067 antisense Interval_26983 chr11 62116886 62117152 + 0 NA promoter-TSS (ENSMUSG00000118644.1) unprocessed_pseudogene-promoter-TSS (ENSMUSG00000118644.1) -400 ENSMUSG00000118644.1 ENSMUSG00000118644 ENSMUST00000239393 AL592080.1 unprocessed_pseudogene Interval_117129 chr4 119813860 119816115 + 0 NA TTS (ENSMUSG00000028634.17) protein_coding-TTS (ENSMUSG00000028634.17) -156206 ENSMUSG00000032978.14 ENSMUSG00000032978 ENSMUST00000044426 Guca2b protein_coding Interval_169291 chr9 96187279 96187496 + 0 NA Intergenic Intergenic 16471 ENSMUSG00000041440.18 ENSMUSG00000041440 ENSMUST00000189249 Gk5 protein_coding Interval_129770 chr5 122232972 122233991 + 0 NA TTS (ENSMUSG00000064267.13) protein_coding-TTS (ENSMUSG00000064267.13) -19521 ENSMUSG00000082645.3 ENSMUSG00000082645 ENSMUST00000120264 Gm15481 processed_pseudogene Interval_62745 chr15 96598311 96599392 + 0 NA intron (ENSMUSG00000023169.15, intron 4 of 11) protein_coding-intron (ENSMUSG00000023169.15, intron 4 of 15) 43362 ENSMUSG00000023169.15 ENSMUSG00000023169 ENSMUST00000229253 Slc38a1 protein_coding Interval_76774 chr17 83953817 83956513 + 0 NA Intergenic Intergenic -1083 ENSMUSG00000117611.1 ENSMUSG00000117611 ENSMUST00000234776 Gm35229 lincRNA Interval_74502 chr17 52431141 52431649 + 0 NA Intergenic Intergenic 30370 ENSMUSG00000117035.1 ENSMUSG00000117035 ENSMUST00000233404 Gm5094 lincRNA Interval_120810 chr4 150768791 150769088 + 0 NA Intergenic Intergenic -56794 ENSMUSG00000085097.1 ENSMUSG00000085097 ENSMUST00000133196 Gm13049 lincRNA Interval_125369 chr5 66503618 66504564 + 0 NA intron (ENSMUSG00000029207.16, intron 1 of 3) protein_coding-intron (ENSMUSG00000029207.16, intron 2 of 17) -11919 ENSMUSG00000029207.16 ENSMUSG00000029207 ENSMUST00000159847 Apbb2 protein_coding Interval_23912 chr11 28227021 28227305 + 0 NA Intergenic Intergenic 112651 ENSMUSG00000032889.7 ENSMUSG00000032889 ENSMUST00000042595 Gm6685 processed_pseudogene Interval_151297 chr7 120798869 120799281 + 0 NA exon (ENSMUSG00000030889.14, exon 28 of 34) protein_coding-exon (ENSMUSG00000030889.14, exon 28 of 34) -13290 ENSMUSG00000109392.1 ENSMUSG00000109392 ENSMUST00000208668 Gm5737 protein_coding Interval_79177 chr18 25461352 25461549 + 0 NA intron (ENSMUSG00000033632.16, intron 11 of 11) protein_coding-intron (ENSMUSG00000033632.16, intron 9 of 9) 39789 ENSMUSG00000024268.16 ENSMUSG00000024268 ENSMUST00000224143 Celf4 protein_coding Interval_74136 chr17 46720325 46720554 + 0 NA intron (ENSMUSG00000002763.16, intron 1 of 3) protein_coding-intron (ENSMUSG00000002763.16, intron 4 of 16) 228 ENSMUSG00000002763.16 ENSMUSG00000002763 ENSMUST00000148872 Pex6 protein_coding Interval_30243 chr11 91615844 91616055 + 0 NA Intergenic Intergenic -38391 ENSMUSG00000046755.5 ENSMUSG00000046755 ENSMUST00000061019 Kif2b protein_coding Interval_64403 chr16 11154444 11155090 + 0 NA exon (ENSMUSG00000037965.14, exon 4 of 4) protein_coding-exon (ENSMUSG00000037965.14, exon 4 of 4) -3545 ENSMUSG00000037965.14 ENSMUSG00000037965 ENSMUST00000155255 Zc3h7a protein_coding Interval_98013 chr2 146672589 146673449 + 0 NA Intergenic Intergenic 82686 ENSMUSG00000080870.1 ENSMUSG00000080870 ENSMUST00000119851 Gm14111 processed_pseudogene Interval_133555 chr6 6665146 6665519 + 0 NA intron (ENSMUSG00000093675.7, intron 3 of 4) lincRNA-intron (ENSMUSG00000093675.7, intron 4 of 4) -18054 ENSMUSG00000093581.1 ENSMUSG00000093581 ENSMUST00000177411 Gm18006 processed_pseudogene Interval_156765 chr8 58342253 58342832 + 0 NA intron (ENSMUSG00000096914.3, intron 5 of 12) protein_coding-intron (ENSMUSG00000096914.3, intron 5 of 12) 95955 ENSMUSG00000109963.1 ENSMUSG00000109963 ENSMUST00000211516 Gm45635 TEC Interval_105862 chr3 89806930 89807394 + 0 NA Intergenic Intergenic -13836 ENSMUSG00000106564.1 ENSMUSG00000106564 ENSMUST00000199694 Gm8969 processed_pseudogene Interval_160732 chr8 111876222 111877108 + 0 NA promoter-TSS (ENSMUSG00000031953.2) protein_coding-promoter-TSS (ENSMUSG00000031953.2) 85 ENSMUSG00000031953.2 ENSMUSG00000031953 ENSMUST00000034431 Tmem170 protein_coding Interval_94304 chr2 87721396 87721641 + 0 NA Intergenic Intergenic -8339 ENSMUSG00000075150.2 ENSMUSG00000075150 ENSMUST00000099850 Olfr1137 protein_coding Interval_143329 chr7 5457975 5460032 + 0 NA Intergenic Intergenic -3263 ENSMUSG00000117744.1 ENSMUSG00000117744 ENSMUST00000074132 Vmn1r59 protein_coding Interval_27868 chr11 70519359 70520766 + 0 NA exon (ENSMUSG00000046811.3, exon 3 of 3) protein_coding-exon (ENSMUSG00000046811.3, exon 3 of 3) 423 ENSMUSG00000046811.3 ENSMUSG00000046811 ENSMUST00000179000 Gltpd2 protein_coding Interval_11391 chr1 181535740 181536023 + 0 NA Intergenic Intergenic -24430 ENSMUSG00000050625.4 ENSMUSG00000050625 ENSMUST00000058825 Ccdc121 protein_coding Interval_167435 chr9 69306800 69307359 + 0 NA intron (ENSMUSG00000032238.17, intron 1 of 9) protein_coding-intron (ENSMUSG00000032238.17, intron 2 of 10) 57168 ENSMUSG00000086648.1 ENSMUSG00000086648 ENSMUST00000152570 Gm15511 antisense Interval_41575 chr12 116466237 116468116 + 0 NA Intergenic Intergenic 9823 ENSMUSG00000084629.1 ENSMUSG00000084629 ENSMUST00000122680 Gm25112 snRNA Interval_118095 chr4 128927005 128928070 + 0 NA Intergenic Intergenic -8468 ENSMUSG00000085961.1 ENSMUSG00000085961 ENSMUST00000154515 Gm15904 antisense Interval_13169 chr10 12762618 12763584 + 0 NA intron (ENSMUSG00000019820.11, intron 3 of 17) protein_coding-intron (ENSMUSG00000019820.11, intron 2 of 73) 30873 ENSMUSG00000088516.1 ENSMUSG00000088516 ENSMUST00000157891 Gm23044 snRNA Interval_4717 chr1 77561835 77562272 + 0 NA Intergenic Intergenic -8619 ENSMUSG00000101506.1 ENSMUSG00000101506 ENSMUST00000185671 Gm28385 processed_pseudogene Interval_2365 chr1 38506169 38507969 + 0 NA intron (ENSMUSG00000037138.18, intron 5 of 22) protein_coding-intron (ENSMUSG00000037138.18, intron 5 of 7) 19550 ENSMUSG00000102984.1 ENSMUSG00000102984 ENSMUST00000195175 Gm34727 processed_pseudogene Interval_157915 chr8 75742756 75743534 + 0 NA intron (ENSMUSG00000031620.16, intron 9 of 13) protein_coding-intron (ENSMUSG00000031620.16, intron 8 of 12) -29949 ENSMUSG00000101431.1 ENSMUSG00000101431 ENSMUST00000120430 Gm7901 processed_pseudogene Interval_33119 chr11 114570053 114572048 + 0 NA Intergenic Intergenic -93558 ENSMUSG00000083769.1 ENSMUSG00000083769 ENSMUST00000120766 Gm11689 processed_pseudogene Interval_129569 chr5 120999274 121000056 + 0 NA intron (ENSMUSG00000029608.10, intron 2 of 21) protein_coding-intron (ENSMUSG00000029608.10, intron 2 of 21) 10415 ENSMUSG00000029608.10 ENSMUSG00000029608 ENSMUST00000200792 Rph3a protein_coding Interval_130653 chr5 129491413 129491976 + 0 NA Intergenic Intergenic 9307 ENSMUSG00000104873.1 ENSMUSG00000104873 ENSMUST00000199847 Gm40332 TEC Interval_110054 chr3 152799719 152800319 + 0 NA intron (ENSMUSG00000039047.17, intron 10 of 14) protein_coding-intron (ENSMUSG00000039047.17, intron 10 of 14) -17958 ENSMUSG00000090095.1 ENSMUSG00000090095 ENSMUST00000161849 Rpl29-ps1 processed_pseudogene Interval_60718 chr15 76332591 76333318 + 0 NA promoter-TSS (ENSMUSG00000022561.13) protein_coding-promoter-TSS (ENSMUSG00000022561.13) 666 ENSMUSG00000022561.13 ENSMUSG00000022561 ENSMUST00000165179 Gpaa1 protein_coding Interval_98684 chr2 154294380 154295537 + 0 NA Intergenic Intergenic -9697 ENSMUSG00000083732.1 ENSMUSG00000083732 ENSMUST00000117480 Gm14197 processed_pseudogene Interval_49567 chr13 113013244 113014224 + 0 NA Intergenic Intergenic 19889 ENSMUSG00000074651.3 ENSMUSG00000074651 ENSMUST00000092089 Mcidas protein_coding Interval_86869 chr19 44493487 44493753 + 0 NA exon (ENSMUSG00000036961.5, exon 1 of 6) protein_coding-exon (ENSMUSG00000036961.5, exon 1 of 6) -16701 ENSMUSG00000036961.5 ENSMUSG00000036961 ENSMUST00000237970 Wnt8b protein_coding Interval_168395 chr9 80016617 80016805 + 0 NA Intergenic Intergenic 12873 ENSMUSG00000111827.1 ENSMUSG00000111827 ENSMUST00000213783 Gm8131 processed_pseudogene Interval_92637 chr2 61768165 61768508 + 0 NA intron (ENSMUSG00000026914.15, intron 1 of 5) protein_coding-intron (ENSMUSG00000026914.15, intron 7 of 11) 2950 ENSMUSG00000026914.15 ENSMUSG00000026914 ENSMUST00000125388 Psmd14 protein_coding Interval_74838 chr17 56808417 56809067 + 0 NA intron (ENSMUSG00000024206.15, intron 1 of 4) protein_coding-intron (ENSMUSG00000024206.15, intron 1 of 17) 22197 ENSMUSG00000024206.15 ENSMUSG00000024206 ENSMUST00000233643 Rfx2 protein_coding Interval_134472 chr6 28994130 28994756 + 0 NA intron (ENSMUSG00000092090.2, intron 1 of 1) lincRNA-intron (ENSMUSG00000092090.2, intron 1 of 1) 12809 ENSMUSG00000092090.2 ENSMUSG00000092090 ENSMUST00000164104 Gm3294 lincRNA Interval_93467 chr2 73280764 73281233 + 0 NA intron (ENSMUSG00000068859.5, intron 1 of 2) protein_coding-intron (ENSMUSG00000068859.5, intron 1 of 2) 9032 ENSMUSG00000068859.5 ENSMUSG00000068859 ENSMUST00000147133 Sp9 protein_coding Interval_134057 chr6 18333011 18333202 + 0 NA Intergenic Intergenic 38835 ENSMUSG00000080767.1 ENSMUSG00000080767 ENSMUST00000120840 Gm15595 processed_pseudogene Interval_18190 chr10 83539304 83540147 + 0 NA Intergenic Intergenic -43708 ENSMUSG00000020256.14 ENSMUSG00000020256 ENSMUST00000125193 Aldh1l2 protein_coding Interval_42824 chr13 20055296 20055465 + 0 NA Intergenic Intergenic -59576 ENSMUSG00000050243.6 ENSMUSG00000050243 ENSMUST00000091762 Gm5446 processed_pseudogene Interval_47020 chr13 74406306 74407194 + 0 NA promoter-TSS (ENSMUSG00000076033.1) miRNA-promoter-TSS (ENSMUSG00000076033.1) -13 ENSMUSG00000113311.1 ENSMUSG00000113311 ENSMUST00000222047 Gm47428 antisense Interval_85187 chr19 23520520 23521251 + 0 NA Intergenic Intergenic -72443 ENSMUSG00000033207.7 ENSMUSG00000033207 ENSMUST00000236349 Mamdc2 protein_coding Interval_15029 chr10 42050838 42051759 + 0 NA Intergenic Intergenic 4008 ENSMUSG00000085666.3 ENSMUSG00000085666 ENSMUST00000121229 Tdg-ps2 processed_pseudogene Interval_173408 chrX 90358415 90358692 + 0 NA Intergenic Intergenic 60819 ENSMUSG00000082479.3 ENSMUSG00000082479 ENSMUST00000120395 Gm4746 processed_pseudogene Interval_171339 chr9 116508564 116509378 + 0 NA Intergenic Intergenic 177803 ENSMUSG00000110752.1 ENSMUSG00000110752 ENSMUST00000217456 D730003K21Rik lincRNA Interval_58325 chr15 32384536 32384726 + 0 NA intron (ENSMUSG00000022231.10, intron 2 of 7) protein_coding-intron (ENSMUSG00000022231.10, intron 2 of 22) 139806 ENSMUSG00000022231.10 ENSMUSG00000022231 ENSMUST00000227429 Sema5a protein_coding Interval_101401 chr2 181059804 181060742 + 0 NA Intergenic Intergenic -31945 ENSMUSG00000027577.14 ENSMUSG00000027577 ENSMUST00000124400 Chrna4 protein_coding Interval_130943 chr5 134178455 134178999 + 0 NA Intergenic Intergenic 2381 ENSMUSG00000104195.1 ENSMUSG00000104195 ENSMUST00000192229 B230377A18Rik TEC Interval_133554 chr6 6603598 6603858 + 0 NA exon (ENSMUSG00000093675.7, exon 5 of 5) lincRNA-exon (ENSMUSG00000093675.7, exon 5 of 5) -25065 ENSMUSG00000042541.10 ENSMUSG00000042541 ENSMUST00000205180 Sem1 protein_coding Interval_151994 chr7 128009780 128011042 + 0 NA exon (ENSMUSG00000042828.12, exon 6 of 6) protein_coding-exon (ENSMUSG00000042828.12, exon 6 of 6) 2773 ENSMUSG00000108437.1 ENSMUSG00000108437 ENSMUST00000206996 Gm19366 processed_pseudogene Interval_61347 chr15 80972072 80972353 + 0 NA Intergenic Intergenic -5677 ENSMUSG00000042303.19 ENSMUSG00000042303 ENSMUST00000156783 Sgsm3 protein_coding Interval_103660 chr3 51441433 51441659 + 0 NA promoter-TSS (ENSMUSG00000063273.11) protein_coding-promoter-TSS (ENSMUSG00000063273.11) 629 ENSMUSG00000063273.11 ENSMUSG00000063273 ENSMUST00000193267 Naa15 protein_coding Interval_152261 chr7 131045023 131045749 + 0 NA intron (ENSMUSG00000047517.12, intron 7 of 40) protein_coding-intron (ENSMUSG00000047517.12, intron 5 of 46) 13333 ENSMUSG00000047517.12 ENSMUSG00000047517 ENSMUST00000209167 Dmbt1 protein_coding Interval_138594 chr6 90033564 90033826 + 0 NA Intergenic Intergenic 3146 ENSMUSG00000057592.1 ENSMUSG00000057592 ENSMUST00000073415 Vmn1r48 protein_coding Interval_23961 chr11 28907542 28907782 + 0 NA intron (ENSMUSG00000020467.15, intron 4 of 10) protein_coding-intron (ENSMUSG00000020467.15, intron 4 of 10) -8005 ENSMUSG00000020467.15 ENSMUSG00000020467 ENSMUST00000139713 Efemp1 protein_coding Interval_98414 chr2 152181788 152182010 + 0 NA Intergenic Intergenic 3783 ENSMUSG00000081087.1 ENSMUSG00000081087 ENSMUST00000117430 Rps15a-ps7 processed_pseudogene Interval_118625 chr4 132842257 132843920 + 0 NA promoter-TSS (ENSMUSG00000028882.13) protein_coding-promoter-TSS (ENSMUSG00000028882.13) -4541 ENSMUSG00000088990.1 ENSMUSG00000088990 ENSMUST00000158365 Gm22767 scaRNA Interval_140240 chr6 115741844 115742382 + 0 NA intron (ENSMUSG00000059900.14, intron 2 of 10) protein_coding-intron (ENSMUSG00000059900.14, intron 2 of 11) 8502 ENSMUSG00000098477.1 ENSMUSG00000098477 ENSMUST00000184176 Gm27853 misc_RNA Interval_22750 chr11 14599231 14599653 + 0 NA promoter-TSS (ENSMUSG00000085561.1) lincRNA-promoter-TSS (ENSMUSG00000085561.1) 166 ENSMUSG00000084135.4 ENSMUSG00000084135 ENSMUST00000117584 Pom121l12 protein_coding Interval_14977 chr10 41632205 41632588 + 0 NA intron (ENSMUSG00000075225.15, intron 19 of 47) protein_coding-intron (ENSMUSG00000075225.15, intron 1 of 12) -21077 ENSMUSG00000075225.15 ENSMUSG00000075225 ENSMUST00000190522 Ccdc162 protein_coding Interval_47558 chr13 88490215 88490788 + 0 NA Intergenic Intergenic 9869 ENSMUSG00000114740.1 ENSMUSG00000114740 ENSMUST00000226036 Gm47653 processed_pseudogene Interval_127417 chr5 103799151 103800412 + 0 NA intron (ENSMUSG00000029313.18, intron 3 of 12) protein_coding-intron (ENSMUSG00000029313.18, intron 3 of 19) 45217 ENSMUSG00000029313.18 ENSMUSG00000029313 ENSMUST00000152145 Aff1 protein_coding Interval_124228 chr5 41761246 41762169 + 0 NA exon (ENSMUSG00000049691.8, exon 2 of 2) protein_coding-exon (ENSMUSG00000049691.8, exon 2 of 2) 2794 ENSMUSG00000049691.8 ENSMUSG00000049691 ENSMUST00000060820 Nkx3-2 protein_coding Interval_48414 chr13 98881801 98882793 + 0 NA intron (ENSMUSG00000009470.17, intron 4 of 6) protein_coding-intron (ENSMUSG00000009470.17, intron 4 of 23) -11974 ENSMUSG00000009470.17 ENSMUSG00000009470 ENSMUST00000179271 Tnpo1 protein_coding Interval_100255 chr2 167993272 167993546 + 0 NA intron (ENSMUSG00000074577.9, intron 7 of 21) protein_coding-intron (ENSMUSG00000074577.9, intron 7 of 21) -2062 ENSMUSG00000074577.9 ENSMUSG00000074577 ENSMUST00000142702 Ripor3 protein_coding Interval_132520 chr5 145688039 145688241 + 0 NA Intergenic Intergenic 31996 ENSMUSG00000075551.4 ENSMUSG00000075551 ENSMUST00000094111 Cyp3a41a protein_coding Interval_70293 chr17 8282736 8284449 + 0 NA promoter-TSS (ENSMUSG00000023861.17) protein_coding-promoter-TSS (ENSMUSG00000023861.17) -170 ENSMUSG00000023861.17 ENSMUSG00000023861 ENSMUST00000130559 Mpc1 protein_coding Interval_144043 chr7 19159959 19160560 + 0 NA intron (ENSMUSG00000030406.7, intron 8 of 11) protein_coding-intron (ENSMUSG00000030406.7, intron 9 of 13) 5868 ENSMUSG00000030406.7 ENSMUSG00000030406 ENSMUST00000206137 Gipr protein_coding Interval_53599 chr14 59736779 59738256 + 0 NA intron (ENSMUSG00000021983.16, intron 32 of 35) protein_coding-intron (ENSMUSG00000021983.16, intron 32 of 35) 94969 ENSMUSG00000114593.1 ENSMUSG00000114593 ENSMUST00000224256 Gm19716 transcribed_processed_pseudogene Interval_100871 chr2 173044497 173044748 + 0 NA Intergenic Intergenic -10042 ENSMUSG00000087442.1 ENSMUSG00000087442 ENSMUST00000139677 Gm14453 antisense Interval_118945 chr4 134614878 134615566 + 0 NA intron (ENSMUSG00000037306.13, intron 2 of 8) protein_coding-intron (ENSMUSG00000037306.13, intron 3 of 12) -47371 ENSMUSG00000099289.1 ENSMUSG00000099289 ENSMUST00000185007 Mir6403 miRNA Interval_158981 chr8 88417260 88417789 + 0 NA Intergenic Intergenic 26403 ENSMUSG00000110280.1 ENSMUSG00000110280 ENSMUST00000211701 Gm45497 processed_pseudogene Interval_15166 chr10 43026848 43027561 + 0 NA intron (ENSMUSG00000038248.8, intron 5 of 6) protein_coding-intron (ENSMUSG00000038248.8, intron 5 of 6) -7789 ENSMUSG00000111171.1 ENSMUSG00000111171 ENSMUST00000213469 Gm47815 antisense Interval_89966 chr2 26902503 26903581 + 0 NA promoter-TSS (ENSMUSG00000036160.13) protein_coding-promoter-TSS (ENSMUSG00000036160.13) -252 ENSMUSG00000036160.13 ENSMUSG00000036160 ENSMUST00000127691 Surf6 protein_coding Interval_134852 chr6 32555195 32555567 + 0 NA intron (ENSMUSG00000029765.12, intron 1 of 31) protein_coding-intron (ENSMUSG00000029765.12, intron 1 of 31) 44308 ENSMUSG00000086763.1 ENSMUSG00000086763 ENSMUST00000150314 Plxna4os1 antisense Interval_76903 chr17 84850568 84851297 + 0 NA Intergenic Intergenic -1606 ENSMUSG00000117631.1 ENSMUSG00000117631 ENSMUST00000234899 Gm9400 unprocessed_pseudogene Interval_51493 chr14 28474896 28475351 + 0 NA intron (ENSMUSG00000040640.11, intron 1 of 1) protein_coding-intron (ENSMUSG00000040640.11, intron 15 of 15) 19602 ENSMUSG00000040640.11 ENSMUSG00000040640 ENSMUST00000224045 Erc2 protein_coding Interval_118952 chr4 134671713 134672367 + 0 NA intron (ENSMUSG00000037306.13, intron 1 of 8) protein_coding-intron (ENSMUSG00000037306.13, intron 2 of 12) 31727 ENSMUSG00000037306.13 ENSMUSG00000037306 ENSMUST00000176606 Man1c1 protein_coding Interval_58311 chr15 32232801 32233258 + 0 NA Intergenic Intergenic 6644 ENSMUSG00000107924.1 ENSMUSG00000107924 ENSMUST00000203902 4930518I17Rik lincRNA Interval_167299 chr9 67130043 67130713 + 0 NA Intergenic Intergenic -3183 ENSMUSG00000111556.1 ENSMUSG00000111556 ENSMUST00000215724 Gm19299 lincRNA Interval_71813 chr17 26261772 26262751 + 0 NA intron (ENSMUSG00000024188.16, intron 3 of 3) protein_coding-intron (ENSMUSG00000024188.16, intron 3 of 8) -7076 ENSMUSG00000089764.2 ENSMUSG00000089764 ENSMUST00000162696 Gm16580 processed_pseudogene Interval_151522 chr7 123241885 123242643 + 0 NA intron (ENSMUSG00000030769.15, intron 4 of 14) protein_coding-intron (ENSMUSG00000030769.15, intron 6 of 16) -22925 ENSMUSG00000030769.15 ENSMUSG00000030769 ENSMUST00000206180 Slc5a11 protein_coding Interval_16885 chr10 69476873 69477353 + 0 NA intron (ENSMUSG00000069601.14, intron 1 of 1) protein_coding-intron (ENSMUSG00000069601.14, intron 1 of 1) -53365 ENSMUSG00000111899.1 ENSMUSG00000111899 ENSMUST00000218846 Gm18636 processed_pseudogene Interval_37130 chr12 58769185 58770565 + 0 NA Intergenic Intergenic 5969 ENSMUSG00000112487.1 ENSMUSG00000112487 ENSMUST00000219517 Gm18873 processed_pseudogene Interval_129343 chr5 119309872 119310818 + 0 NA Intergenic Intergenic 13100 ENSMUSG00000084548.1 ENSMUSG00000084548 ENSMUST00000122599 n-R5s175 rRNA Interval_121837 chr5 8722542 8722921 + 0 NA intron (ENSMUSG00000040584.8, intron 2 of 2) protein_coding-intron (ENSMUSG00000040584.8, intron 19 of 27) 2882 ENSMUSG00000040584.8 ENSMUSG00000040584 ENSMUST00000138138 Abcb1a protein_coding Interval_148659 chr7 83914267 83915253 + 0 NA Intergenic Intergenic 19707 ENSMUSG00000038503.15 ENSMUSG00000038503 ENSMUST00000207373 Mesd protein_coding Interval_134159 chr6 22087137 22087387 + 0 NA intron (ENSMUSG00000062980.15, intron 4 of 8) protein_coding-intron (ENSMUSG00000062980.15, intron 5 of 9) 61319 ENSMUSG00000062980.15 ENSMUSG00000062980 ENSMUST00000154734 Cped1 protein_coding Interval_65083 chr16 18917864 18918640 + 0 NA intron (ENSMUSG00000099908.1, intron 9 of 23) protein_coding-intron (ENSMUSG00000022702.16, intron 8 of 24) -19149 ENSMUSG00000082130.1 ENSMUSG00000082130 ENSMUST00000120899 Gm15799 processed_pseudogene Interval_50305 chr14 11750600 11751077 + 0 NA intron (ENSMUSG00000021745.14, intron 2 of 3) protein_coding-intron (ENSMUSG00000021745.14, intron 2 of 29) -17105 ENSMUSG00000114310.1 ENSMUSG00000114310 ENSMUST00000225152 Gm48602 TEC Interval_67869 chr16 58426554 58427155 + 0 NA intron (ENSMUSG00000035107.13, intron 2 of 15) protein_coding-intron (ENSMUSG00000035107.13, intron 2 of 15) -18578 ENSMUSG00000086827.1 ENSMUSG00000086827 ENSMUST00000133622 4930461C15Rik lincRNA Interval_96812 chr2 128470341 128471000 + 0 NA intron (ENSMUSG00000074813.14, intron 2 of 2) lincRNA-intron (ENSMUSG00000074813.14, intron 2 of 2) 36947 ENSMUSG00000114963.1 ENSMUSG00000114963 ENSMUST00000224297 Gm29010 lincRNA Interval_101848 chr3 9995794 9996146 + 0 NA Intergenic Intergenic -16635 ENSMUSG00000027533.10 ENSMUSG00000027533 ENSMUST00000123744 Fabp5 protein_coding Interval_137716 chr6 81383725 81384324 + 0 NA Intergenic Intergenic 37234 ENSMUSG00000107691.1 ENSMUSG00000107691 ENSMUST00000203247 Gm43901 processed_pseudogene Interval_161984 chr8 124264501 124264733 + 0 NA intron (ENSMUSG00000089704.9, intron 1 of 4) protein_coding-intron (ENSMUSG00000089704.9, intron 1 of 15) -30749 ENSMUSG00000089704.9 ENSMUSG00000089704 ENSMUST00000147911 Galnt2 protein_coding Interval_71660 chr17 25201824 25203185 + 0 NA intron (ENSMUSG00000015127.14, intron 4 of 14) protein_coding-intron (ENSMUSG00000015127.14, intron 4 of 14) -8181 ENSMUSG00000015127.14 ENSMUSG00000015127 ENSMUST00000161679 Unkl protein_coding Interval_62766 chr15 96722077 96722866 + 0 NA Intergenic Intergenic 22298 ENSMUSG00000102385.1 ENSMUSG00000102385 ENSMUST00000192790 Gm38144 TEC Interval_20997 chr10 123115641 123115946 + 0 NA intron (ENSMUSG00000020124.10, intron 21 of 21) protein_coding-intron (ENSMUSG00000020124.10, intron 20 of 20) 62891 ENSMUSG00000112879.1 ENSMUSG00000112879 ENSMUST00000219693 Gm47726 processed_pseudogene Interval_147197 chr7 64360244 64360795 + 0 NA TTS (ENSMUSG00000033458.17) protein_coding-TTS (ENSMUSG00000033458.17) 12854 ENSMUSG00000033458.17 ENSMUSG00000033458 ENSMUST00000206730 Fan1 protein_coding Interval_64712 chr16 14387817 14388170 + 0 NA intron (ENSMUSG00000023088.17, intron 1 of 2) protein_coding-intron (ENSMUSG00000023088.17, intron 1 of 30) 5186 ENSMUSG00000089106.1 ENSMUSG00000089106 ENSMUST00000158481 Gm23116 snRNA Interval_139138 chr6 95840926 95841602 + 0 NA Intergenic Intergenic 85665 ENSMUSG00000107856.1 ENSMUSG00000107856 ENSMUST00000203221 Gm7838 processed_pseudogene Interval_4972 chr1 83075718 83077044 + 0 NA Intergenic Intergenic 9279 ENSMUSG00000099691.1 ENSMUSG00000099691 ENSMUST00000190858 Gm29518 processed_pseudogene Interval_5075 chr1 84816108 84817182 + 0 NA intron (ENSMUSG00000026219.14, intron 1 of 40) protein_coding-intron (ENSMUSG00000026219.14, intron 1 of 40) -7455 ENSMUSG00000103505.1 ENSMUSG00000103505 ENSMUST00000194417 Gm38374 TEC Interval_112831 chr4 45381054 45381888 + 0 NA Intergenic Intergenic 15647 ENSMUSG00000093185.1 ENSMUSG00000093185 ENSMUST00000175444 Gm25692 miRNA Interval_142485 chr6 142782643 142782874 + 0 NA Intergenic Intergenic 21744 ENSMUSG00000048473.15 ENSMUSG00000048473 ENSMUST00000111768 Sult6b2 protein_coding Interval_168349 chr9 79254101 79255541 + 0 NA intron (ENSMUSG00000111638.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000111638.1, intron 1 of 1) -9071 ENSMUSG00000111670.1 ENSMUSG00000111670 ENSMUST00000214836 Gm47500 processed_pseudogene Interval_57665 chr15 14168936 14169534 + 0 NA Intergenic Intergenic 26280 ENSMUSG00000115551.1 ENSMUSG00000115551 ENSMUST00000228924 Gm49115 processed_pseudogene Interval_159121 chr8 90830895 90831215 + 0 NA intron (ENSMUSG00000056608.14, intron 1 of 2) protein_coding-intron (ENSMUSG00000056608.14, intron 1 of 39) -13662 ENSMUSG00000110332.1 ENSMUSG00000110332 ENSMUST00000209208 Gm19935 protein_coding Interval_167113 chr9 65398212 65399016 + 0 NA promoter-TSS (ENSMUSG00000041696.14) protein_coding-promoter-TSS (ENSMUSG00000041696.14) 108 ENSMUSG00000041696.14 ENSMUSG00000041696 ENSMUST00000165682 Rasl12 protein_coding Interval_40576 chr12 105810968 105811197 + 0 NA exon (ENSMUSG00000021111.15, exon 10 of 23) protein_coding-exon (ENSMUSG00000021111.15, exon 10 of 23) -17985 ENSMUSG00000021111.15 ENSMUSG00000021111 ENSMUST00000172089 Papola protein_coding Interval_53906 chr14 63251612 63251929 + 0 NA intron (ENSMUSG00000021944.15, intron 1 of 1) protein_coding-intron (ENSMUSG00000021944.15, intron 1 of 1) 19354 ENSMUSG00000021944.15 ENSMUSG00000021944 ENSMUST00000156782 Gata4 protein_coding Interval_70674 chr17 12959972 12961035 + 0 NA promoter-TSS (ENSMUSG00000023832.14) protein_coding-promoter-TSS (ENSMUSG00000023832.14) 217 ENSMUSG00000023832.14 ENSMUSG00000023832 ENSMUST00000159358 Acat2 protein_coding Interval_160327 chr8 108419241 108419550 + 0 NA intron (ENSMUSG00000038872.10, intron 3 of 15) protein_coding-intron (ENSMUSG00000038872.10, intron 3 of 15) 117826 ENSMUSG00000109868.1 ENSMUSG00000109868 ENSMUST00000211262 Gm39244 lincRNA Interval_32715 chr11 109916703 109917320 + 0 NA Intergenic Intergenic -19305 ENSMUSG00000085629.1 ENSMUSG00000085629 ENSMUST00000149226 Gm11697 antisense Interval_44664 chr13 47005003 47005248 + 0 NA intron (ENSMUSG00000051606.5, intron 2 of 6) processed_transcript-intron (ENSMUSG00000051606.5, intron 2 of 2) -3199 ENSMUSG00000051606.5 ENSMUSG00000051606 ENSMUST00000060680 2010001K21Rik processed_transcript Interval_154784 chr8 23343707 23344650 + 0 NA Intergenic Intergenic -54014 ENSMUSG00000077399.1 ENSMUSG00000077399 ENSMUST00000104211 Gm24335 snoRNA Interval_62472 chr15 93262608 93262909 + 0 NA intron (ENSMUSG00000036197.16, intron 1 of 6) protein_coding-intron (ENSMUSG00000036197.16, intron 1 of 7) 12421 ENSMUSG00000036197.16 ENSMUSG00000036197 ENSMUST00000057896 Gxylt1 protein_coding Interval_110863 chr4 9135568 9137033 + 0 NA Intergenic Intergenic -73703 ENSMUSG00000075958.1 ENSMUSG00000075958 ENSMUST00000082782 Gm23423 snRNA Interval_110039 chr3 152713840 152714703 + 0 NA intron (ENSMUSG00000039047.17, intron 1 of 7) protein_coding-intron (ENSMUSG00000039047.17, intron 1 of 11) 148 ENSMUSG00000039047.17 ENSMUSG00000039047 ENSMUST00000160651 Pigk protein_coding Interval_149659 chr7 100474294 100475069 + 0 NA intron (ENSMUSG00000032942.14, intron 1 of 6) protein_coding-intron (ENSMUSG00000032942.14, intron 1 of 6) 165 ENSMUSG00000099137.1 ENSMUSG00000099137 ENSMUST00000184875 Gm10603 antisense Interval_146496 chr7 46404325 46405188 + 0 NA intron (ENSMUSG00000058975.7, intron 1 of 3) protein_coding-intron (ENSMUSG00000058975.7, intron 1 of 1) 7108 ENSMUSG00000058975.7 ENSMUSG00000058975 ENSMUST00000160234 Kcnc1 protein_coding Interval_140592 chr6 119918520 119919392 + 0 NA TTS (ENSMUSG00000030166.14) protein_coding-TTS (ENSMUSG00000030166.14) 874 ENSMUSG00000030166.14 ENSMUSG00000030166 ENSMUST00000204319 Rad52 protein_coding Interval_151746 chr7 126387802 126388770 + 0 NA intron (ENSMUSG00000030722.7, intron 5 of 7) protein_coding-intron (ENSMUSG00000030722.7, intron 5 of 7) 2271 ENSMUSG00000030722.7 ENSMUSG00000030722 ENSMUST00000142947 Nfatc2ip protein_coding Interval_87153 chr19 46496014 46496469 + 0 NA Intergenic Intergenic -18419 ENSMUSG00000025034.9 ENSMUSG00000025034 ENSMUST00000235934 Trim8 protein_coding Interval_75960 chr17 73804565 73805395 + 0 NA exon (ENSMUSG00000024065.8, exon 1 of 6) protein_coding-exon (ENSMUSG00000024065.8, exon 1 of 6) 846 ENSMUSG00000024065.8 ENSMUSG00000024065 ENSMUST00000024860 Ehd3 protein_coding Interval_173265 chrX 75749217 75751355 + 0 NA intron (ENSMUSG00000087396.7, intron 4 of 10) processed_transcript-intron (ENSMUSG00000087396.7, intron 2 of 3) 26614 ENSMUSG00000081996.1 ENSMUSG00000081996 ENSMUST00000117092 Gm7153 processed_pseudogene Interval_66328 chr16 33176130 33179440 + 0 NA Intergenic Intergenic -7286 ENSMUSG00000022807.9 ENSMUSG00000022807 ENSMUST00000231617 Osbpl11 protein_coding Interval_33809 chr11 118671770 118672019 + 0 NA intron (ENSMUSG00000025576.17, intron 2 of 14) protein_coding-intron (ENSMUSG00000025576.17, intron 2 of 14) -119478 ENSMUSG00000085059.1 ENSMUSG00000085059 ENSMUST00000146016 Gm11750 lincRNA Interval_85228 chr19 24022421 24024921 + 0 NA intron (ENSMUSG00000071604.5, intron 1 of 10) protein_coding-intron (ENSMUSG00000071604.5, intron 1 of 10) 18891 ENSMUSG00000117820.1 ENSMUSG00000117820 ENSMUST00000235965 Gm50305 processed_pseudogene Interval_113254 chr4 52432367 52432792 + 0 NA intron (ENSMUSG00000085763.1, intron 1 of 1) antisense-intron (ENSMUSG00000085763.1, intron 1 of 1) 6386 ENSMUSG00000085763.1 ENSMUSG00000085763 ENSMUST00000141473 Smc2os antisense Interval_95870 chr2 117540855 117541914 + 0 NA Intergenic Intergenic -123687 ENSMUSG00000085681.1 ENSMUSG00000085681 ENSMUST00000138372 Gm13982 lincRNA Interval_30409 chr11 94181916 94182163 + 0 NA Intergenic Intergenic -29415 ENSMUSG00000037573.5 ENSMUSG00000037573 ENSMUST00000041589 Tob1 protein_coding Interval_117498 chr4 124196237 124196591 + 0 NA Intergenic Intergenic 82763 ENSMUSG00000103541.1 ENSMUSG00000103541 ENSMUST00000193103 Gm37667 TEC Interval_148265 chr7 80178448 80179044 + 0 NA Intergenic Intergenic -19695 ENSMUSG00000030539.13 ENSMUSG00000030539 ENSMUST00000123023 Sema4b protein_coding Interval_13841 chr10 23749425 23749799 + 0 NA Intergenic Intergenic 35863 ENSMUSG00000070063.1 ENSMUSG00000070063 ENSMUST00000093556 Snora33 snoRNA Interval_119116 chr4 135644688 135645905 + 0 NA Intergenic Intergenic 18478 ENSMUSG00000086788.2 ENSMUSG00000086788 ENSMUST00000148529 1700029M20Rik lincRNA Interval_66433 chr16 33829244 33830811 + 0 NA exon (ENSMUSG00000022817.15, exon 1 of 15) protein_coding-exon (ENSMUSG00000022817.15, exon 1 of 15) -5747 ENSMUSG00000116916.1 ENSMUSG00000116916 ENSMUST00000231807 Gm34967 processed_pseudogene Interval_166473 chr9 59791709 59792452 + 0 NA intron (ENSMUSG00000039585.15, intron 6 of 43) protein_coding-intron (ENSMUSG00000039585.15, intron 6 of 41) -24877 ENSMUSG00000087239.1 ENSMUSG00000087239 ENSMUST00000139070 Gm7613 processed_pseudogene Interval_23602 chr11 23721474 23722906 + 0 NA intron (ENSMUSG00000020280.12, intron 3 of 5) protein_coding-intron (ENSMUSG00000020280.12, intron 15 of 17) 48780 ENSMUSG00000020275.9 ENSMUSG00000020275 ENSMUST00000102864 Rel protein_coding Interval_13647 chr10 20395810 20396856 + 0 NA Intergenic Intergenic -30896 ENSMUSG00000111351.1 ENSMUSG00000111351 ENSMUST00000213596 Gm48537 processed_pseudogene Interval_128787 chr5 115256649 115257280 + 0 NA exon (ENSMUSG00000041740.16, exon 1 of 1) protein_coding-exon (ENSMUSG00000041740.16, exon 1 of 1) 928 ENSMUSG00000041740.16 ENSMUSG00000041740 ENSMUST00000200923 Rnf10 protein_coding Interval_111352 chr4 19590633 19591283 + 0 NA intron (ENSMUSG00000028229.11, intron 4 of 5) protein_coding-intron (ENSMUSG00000028229.11, intron 4 of 9) -14493 ENSMUSG00000078772.2 ENSMUSG00000078772 ENSMUST00000108250 Gm12353 protein_coding Interval_146224 chr7 44829903 44830121 + 0 NA TTS (ENSMUSG00000109511.1) protein_coding-TTS (ENSMUSG00000109511.1) -13438 ENSMUSG00000038539.15 ENSMUSG00000038539 ENSMUST00000209072 Atf5 protein_coding Interval_33795 chr11 118558021 118558509 + 0 NA intron (ENSMUSG00000025576.17, intron 3 of 13) protein_coding-intron (ENSMUSG00000025576.17, intron 4 of 14) -50912 ENSMUSG00000025576.17 ENSMUSG00000025576 ENSMUST00000134774 Rbfox3 protein_coding Interval_36315 chr12 41089793 41090010 + 0 NA intron (ENSMUSG00000056899.10, intron 3 of 3) protein_coding-intron (ENSMUSG00000056899.10, intron 1 of 1) -44962 ENSMUSG00000113994.1 ENSMUSG00000113994 ENSMUST00000220956 Gm47375 antisense Interval_3587 chr1 59768754 59768979 + 0 NA intron (ENSMUSG00000067336.6, intron 1 of 12) protein_coding-intron (ENSMUSG00000067336.6, intron 1 of 12) -32397 ENSMUSG00000104052.1 ENSMUSG00000104052 ENSMUST00000194136 Gm38125 TEC Interval_90610 chr2 31453008 31455611 + 0 NA promoter-TSS (ENSMUSG00000055632.18) protein_coding-promoter-TSS (ENSMUSG00000055632.18) -46417 ENSMUSG00000076441.9 ENSMUSG00000076441 ENSMUST00000130195 Ass1 protein_coding Interval_67728 chr16 56510942 56511268 + 0 NA intron (ENSMUSG00000035258.15, intron 1 of 35) protein_coding-intron (ENSMUSG00000035258.15, intron 1 of 39) 33205 ENSMUSG00000035258.15 ENSMUSG00000035258 ENSMUST00000096012 Abi3bp protein_coding Interval_93206 chr2 71162952 71163577 + 0 NA Intergenic Intergenic 45341 ENSMUSG00000027015.4 ENSMUSG00000027015 ENSMUST00000028403 Cybrd1 protein_coding Interval_128328 chr5 112572219 112572498 + 0 NA intron (ENSMUSG00000058153.15, intron 1 of 14) protein_coding-intron (ENSMUSG00000058153.15, intron 1 of 16) 4510 ENSMUSG00000058153.15 ENSMUSG00000058153 ENSMUST00000212758 Sez6l protein_coding Interval_80485 chr18 42603670 42603923 + 0 NA intron (ENSMUSG00000117719.1, intron 2 of 2) lincRNA-intron (ENSMUSG00000117719.1, intron 2 of 2) 7864 ENSMUSG00000117882.1 ENSMUSG00000117882 ENSMUST00000237737 Gm50213 processed_pseudogene Interval_32698 chr11 109731798 109732033 + 0 NA Intergenic Intergenic -9636 ENSMUSG00000020614.13 ENSMUSG00000020614 ENSMUST00000144972 Fam20a protein_coding Interval_43718 chr13 35763085 35763566 + 0 NA intron (ENSMUSG00000059288.14, intron 1 of 2) protein_coding-intron (ENSMUSG00000059288.14, intron 3 of 9) 513 ENSMUSG00000059288.14 ENSMUSG00000059288 ENSMUST00000226071 Cdyl protein_coding Interval_129451 chr5 120266714 120267043 + 0 NA Intergenic Intergenic 11620 ENSMUSG00000106915.1 ENSMUSG00000106915 ENSMUST00000202782 Gm42655 TEC Interval_123907 chr5 36431527 36431751 + 0 NA Intergenic Intergenic 33214 ENSMUSG00000039563.6 ENSMUSG00000039563 ENSMUST00000151434 2210406O10Rik lincRNA Interval_92688 chr2 62645744 62646897 + 0 NA promoter-TSS (ENSMUSG00000026896.14) protein_coding-promoter-TSS (ENSMUSG00000026896.14) -65 ENSMUSG00000026896.14 ENSMUSG00000026896 ENSMUST00000175964 Ifih1 protein_coding Interval_76026 chr17 74458637 74459646 + 0 NA promoter-TSS (ENSMUSG00000039193.9) protein_coding-promoter-TSS (ENSMUSG00000039193.9) -10935 ENSMUSG00000039193.9 ENSMUSG00000039193 ENSMUST00000234086 Nlrc4 protein_coding Interval_81139 chr18 54827710 54828905 + 0 NA Intergenic Intergenic -4518 ENSMUSG00000118120.1 ENSMUSG00000118120 ENSMUST00000236611 Gm33732 lincRNA Interval_112108 chr4 34743858 34744060 + 0 NA exon (ENSMUSG00000071015.2, exon 5 of 5) protein_coding-exon (ENSMUSG00000071015.2, exon 5 of 5) 12304 ENSMUSG00000071015.2 ENSMUSG00000071015 ENSMUST00000095129 Gm136 protein_coding Interval_36168 chr12 37458097 37458683 + 0 NA intron (ENSMUSG00000113005.1, intron 3 of 3) protein_coding-intron (ENSMUSG00000050103.18, intron 12 of 12) 13205 ENSMUSG00000050103.18 ENSMUSG00000050103 ENSMUST00000221949 Agmo protein_coding Interval_18009 chr10 81339820 81341771 + 0 NA intron (ENSMUSG00000034872.6, intron 3 of 5) protein_coding-intron (ENSMUSG00000034872.6, intron 3 of 5) 2471 ENSMUSG00000034872.6 ENSMUSG00000034872 ENSMUST00000045102 Gipc3 protein_coding Interval_124393 chr5 45493175 45493980 + 0 NA promoter-TSS (ENSMUSG00000039682.12) protein_coding-promoter-TSS (ENSMUSG00000039682.12) 51 ENSMUSG00000039682.12 ENSMUSG00000039682 ENSMUST00000146811 Lap3 protein_coding Interval_154367 chr8 15026571 15029203 + 0 NA TTS (ENSMUSG00000055675.6) protein_coding-TTS (ENSMUSG00000055675.6) 535 ENSMUSG00000102615.1 ENSMUSG00000102615 ENSMUST00000192473 Gm37844 TEC Interval_88103 chr19 59154035 59155185 + 0 NA Intergenic Intergenic 12370 ENSMUSG00000006270.7 ENSMUSG00000006270 ENSMUST00000173710 Vax1 protein_coding Interval_122649 chr5 24447484 24448129 + 0 NA promoter-TSS (ENSMUSG00000028958.15) protein_coding-promoter-TSS (ENSMUSG00000028958.15) -102 ENSMUSG00000105858.1 ENSMUSG00000105858 ENSMUST00000198276 2310074N15Rik lincRNA Interval_80363 chr18 40178550 40179417 + 0 NA Intergenic Intergenic -2602 ENSMUSG00000117838.1 ENSMUSG00000117838 ENSMUST00000237035 Gm50396 lincRNA Interval_66885 chr16 38345071 38345333 + 0 NA Intergenic Intergenic -1838 ENSMUSG00000095464.1 ENSMUSG00000095464 ENSMUST00000119704 Gm21987 protein_coding Interval_75147 chr17 64014098 64014425 + 0 NA intron (ENSMUSG00000000127.15, intron 11 of 17) protein_coding-intron (ENSMUSG00000000127.15, intron 11 of 17) -150470 ENSMUSG00000045506.3 ENSMUSG00000045506 ENSMUST00000050753 A930002H24Rik protein_coding Interval_46408 chr13 64854708 64855804 + 0 NA intron (ENSMUSG00000033063.8, intron 3 of 23) protein_coding-intron (ENSMUSG00000033063.8, intron 3 of 23) -58716 ENSMUSG00000114179.1 ENSMUSG00000114179 ENSMUST00000221990 Eif1-ps2 processed_pseudogene Interval_54562 chr14 70681842 70683199 + 0 NA exon (ENSMUSG00000022100.14, exon 3 of 3) protein_coding-exon (ENSMUSG00000022100.14, exon 3 of 3) 8070 ENSMUSG00000115387.1 ENSMUSG00000115387 ENSMUST00000228317 Gm49244 processed_pseudogene Interval_111154 chr4 13299999 13301054 + 0 NA Intergenic Intergenic -33476 ENSMUSG00000080359.2 ENSMUSG00000080359 ENSMUST00000116709 Gm26250 miRNA Interval_159100 chr8 90550807 90551352 + 0 NA Intergenic Intergenic 123879 ENSMUSG00000109672.1 ENSMUSG00000109672 ENSMUST00000211205 Gm45639 lincRNA Interval_95089 chr2 103784383 103785090 + 0 NA intron (ENSMUSG00000027184.14, intron 1 of 2) protein_coding-intron (ENSMUSG00000027184.14, intron 2 of 18) 12132 ENSMUSG00000027184.14 ENSMUSG00000027184 ENSMUST00000146527 Caprin1 protein_coding Interval_28437 chr11 75870132 75870571 + 0 NA intron (ENSMUSG00000020847.15, intron 5 of 8) protein_coding-intron (ENSMUSG00000020847.15, intron 4 of 7) 9382 ENSMUSG00000087322.1 ENSMUSG00000087322 ENSMUST00000135873 Gm16075 antisense Interval_160182 chr8 106987822 106988201 + 0 NA intron (ENSMUSG00000041308.6, intron 2 of 6) protein_coding-intron (ENSMUSG00000041308.6, intron 2 of 5) 21600 ENSMUSG00000088969.1 ENSMUSG00000088969 ENSMUST00000158344 Gm22085 snRNA Interval_60629 chr15 75804628 75804874 + 0 NA intron (ENSMUSG00000075600.3, intron 2 of 6) protein_coding-intron (ENSMUSG00000075600.3, intron 4 of 11) 23458 ENSMUSG00000075600.3 ENSMUSG00000075600 ENSMUST00000229000 Zc3h3 protein_coding Interval_125726 chr5 73627747 73628314 + 0 NA intron (ENSMUSG00000067206.3, intron 2 of 4) protein_coding-intron (ENSMUSG00000067206.3, intron 2 of 4) 2282 ENSMUSG00000067206.3 ENSMUSG00000067206 ENSMUST00000152215 Lrrc66 protein_coding Interval_152743 chr7 137121036 137121848 + 0 NA intron (ENSMUSG00000054612.4, intron 3 of 4) protein_coding-intron (ENSMUSG00000054612.4, intron 3 of 4) -46378 ENSMUSG00000110174.1 ENSMUSG00000110174 ENSMUST00000211656 Gm45499 processed_pseudogene Interval_116191 chr4 108565475 108566185 + 0 NA intron (ENSMUSG00000063800.5, intron 1 of 1) protein_coding-intron (ENSMUSG00000063800.5, intron 9 of 9) 1197 ENSMUSG00000063800.5 ENSMUSG00000063800 ENSMUST00000125106 Prpf38a protein_coding Interval_15447 chr10 46768057 46768300 + 0 NA Intergenic Intergenic 70329 ENSMUSG00000065718.1 ENSMUSG00000065718 ENSMUST00000083784 Gm25650 snRNA Interval_171988 chr9 123237566 123238096 + 0 NA Intergenic Intergenic 22933 ENSMUSG00000054871.5 ENSMUSG00000054871 ENSMUST00000068140 Tmem158 protein_coding Interval_24933 chr11 41658169 41658533 + 0 NA Intergenic Intergenic -51991 ENSMUSG00000087306.7 ENSMUSG00000087306 ENSMUST00000139508 A230004M16Rik processed_transcript Interval_140480 chr6 118628615 118628821 + 0 NA promoter-TSS (ENSMUSG00000051331.16) protein_coding-promoter-TSS (ENSMUSG00000051331.16) -9494 ENSMUSG00000100867.1 ENSMUSG00000100867 ENSMUST00000185373 Gm18981 processed_pseudogene Interval_15704 chr10 53812655 53812966 + 0 NA Intergenic Intergenic -9281 ENSMUSG00000112809.1 ENSMUSG00000112809 ENSMUST00000217870 Gm47915 lincRNA Interval_169193 chr9 95435492 95436126 + 0 NA Intergenic Intergenic 10179 ENSMUSG00000101459.1 ENSMUSG00000101459 ENSMUST00000190263 Gm19193 processed_pseudogene Interval_56163 chr14 108975000 108975382 + 0 NA Intergenic Intergenic -61033 ENSMUSG00000075478.3 ENSMUSG00000075478 ENSMUST00000100322 Slitrk1 protein_coding Interval_146129 chr7 44230019 44231009 + 0 NA TTS (ENSMUSG00000063903.5) protein_coding-TTS (ENSMUSG00000063903.5) 5071 ENSMUSG00000063903.5 ENSMUSG00000063903 ENSMUST00000206144 Klk1 protein_coding Interval_158123 chr8 78961806 78962000 + 0 NA intron (ENSMUSG00000109583.1, intron 1 of 4) lincRNA-intron (ENSMUSG00000109583.1, intron 1 of 4) 7977 ENSMUSG00000109583.1 ENSMUSG00000109583 ENSMUST00000210045 Gm39204 lincRNA Interval_52900 chr14 51934060 51934477 + 0 NA Intergenic Intergenic -4608 ENSMUSG00000115698.1 ENSMUSG00000115698 ENSMUST00000227552 Gm49076 lincRNA Interval_109303 chr3 138784070 138784600 + 0 NA intron (ENSMUSG00000028152.10, intron 2 of 5) protein_coding-intron (ENSMUSG00000028152.10, intron 1 of 7) 41566 ENSMUSG00000028152.10 ENSMUSG00000028152 ENSMUST00000121826 Tspan5 protein_coding Interval_148828 chr7 89133589 89133779 + 0 NA Intergenic Intergenic 11813 ENSMUSG00000039428.11 ENSMUSG00000039428 ENSMUST00000137723 Tmem135 protein_coding Interval_44545 chr13 45950806 45951014 + 0 NA intron (ENSMUSG00000046876.16, intron 1 of 2) protein_coding-intron (ENSMUSG00000046876.16, intron 2 of 7) 14066 ENSMUSG00000046876.16 ENSMUSG00000046876 ENSMUST00000222610 Atxn1 protein_coding Interval_83217 chr18 82821533 82822570 + 0 NA Intergenic Intergenic -33843 ENSMUSG00000097738.2 ENSMUSG00000097738 ENSMUST00000180631 4930445N18Rik lincRNA Interval_151180 chr7 119022404 119024107 + 0 NA Intergenic Intergenic -38611 ENSMUSG00000008734.9 ENSMUSG00000008734 ENSMUST00000207614 Gprc5b protein_coding Interval_119141 chr4 135817198 135817811 + 0 NA Intergenic Intergenic 19314 ENSMUSG00000037139.15 ENSMUSG00000037139 ENSMUST00000142177 Myom3 protein_coding Interval_101038 chr2 174433530 174434205 + 0 NA intron (ENSMUSG00000016256.10, intron 2 of 5) protein_coding-intron (ENSMUSG00000016256.10, intron 2 of 5) 5172 ENSMUSG00000016256.10 ENSMUSG00000016256 ENSMUST00000016400 Ctsz protein_coding Interval_27897 chr11 70709743 70710008 + 0 NA intron (ENSMUSG00000020821.17, intron 16 of 22) protein_coding-intron (ENSMUSG00000020821.17, intron 15 of 21) 3885 ENSMUSG00000105932.1 ENSMUSG00000105932 ENSMUST00000197857 Mir6925 miRNA Interval_67771 chr16 57076020 57076764 + 0 NA Intergenic Intergenic -5040 ENSMUSG00000046748.8 ENSMUSG00000046748 ENSMUST00000227043 Tmem45a2 protein_coding Interval_113830 chr4 59196545 59197411 + 0 NA intron (ENSMUSG00000028381.8, intron 1 of 2) protein_coding-intron (ENSMUSG00000028381.8, intron 1 of 8) -15678 ENSMUSG00000028381.8 ENSMUSG00000028381 ENSMUST00000155153 Ugcg protein_coding Interval_73483 chr17 37874425 37874633 + 0 NA Intergenic Intergenic 11502 ENSMUSG00000092468.1 ENSMUSG00000092468 ENSMUST00000174783 Gm18520 processed_pseudogene Interval_168323 chr9 78711854 78712156 + 0 NA intron (ENSMUSG00000046186.8, intron 31 of 32) protein_coding-intron (ENSMUSG00000046186.8, intron 31 of 32) 53595 ENSMUSG00000111139.1 ENSMUSG00000111139 ENSMUST00000217312 Gm47497 processed_pseudogene Interval_99124 chr2 157357304 157358225 + 0 NA Intergenic Intergenic -9830 ENSMUSG00000063019.5 ENSMUSG00000063019 ENSMUST00000081202 Manbal protein_coding Interval_47445 chr13 84332541 84333323 + 0 NA Intergenic Intergenic 7181 ENSMUSG00000098245.1 ENSMUSG00000098245 ENSMUST00000182385 Gm26927 processed_pseudogene Interval_89216 chr2 18116449 18117602 + 0 NA intron (ENSMUSG00000026743.16, intron 4 of 6) protein_coding-intron (ENSMUSG00000026743.16, intron 5 of 22) 12552 ENSMUSG00000092814.1 ENSMUSG00000092814 ENSMUST00000175073 Gm23638 miRNA Interval_135990 chr6 49269127 49269452 + 0 NA Intergenic Intergenic -5256 ENSMUSG00000029817.11 ENSMUSG00000029817 ENSMUST00000204013 Tra2a protein_coding Interval_84100 chr19 7217225 7218303 + 0 NA promoter-TSS (ENSMUSG00000035885.5) protein_coding-promoter-TSS (ENSMUSG00000035885.5) -221 ENSMUSG00000035885.5 ENSMUSG00000035885 ENSMUST00000237087 Cox8a protein_coding Interval_118873 chr4 134199304 134199623 + 0 NA TTS (ENSMUSG00000081772.1) processed_pseudogene-TTS (ENSMUSG00000081772.1) 687 ENSMUSG00000081772.1 ENSMUSG00000081772 ENSMUST00000122228 Gm13131 processed_pseudogene Interval_36959 chr12 55598804 55600891 + 0 NA exon (ENSMUSG00000045440.4, exon 1 of 1) protein_coding-exon (ENSMUSG00000045440.4, exon 1 of 1) 420 ENSMUSG00000045440.4 ENSMUSG00000045440 ENSMUST00000051857 Insm2 protein_coding Interval_33395 chr11 116334008 116335958 + 0 NA intron (ENSMUSG00000034227.7, intron 1 of 2) protein_coding-intron (ENSMUSG00000034227.7, intron 1 of 2) 416 ENSMUSG00000034227.7 ENSMUSG00000034227 ENSMUST00000036215 Foxj1 protein_coding Interval_78763 chr18 20495175 20495377 + 0 NA Intergenic Intergenic -4039 ENSMUSG00000117480.1 ENSMUSG00000117480 ENSMUST00000234005 Gm5688 processed_pseudogene Interval_144785 chr7 28236364 28236614 + 0 NA promoter-TSS (ENSMUSG00000109502.1) processed_pseudogene-promoter-TSS (ENSMUSG00000109502.1) -569 ENSMUSG00000109502.1 ENSMUSG00000109502 ENSMUST00000208035 Gm18672 processed_pseudogene Interval_149523 chr7 99324446 99324681 + 0 NA intron (ENSMUSG00000055407.14, intron 3 of 3) protein_coding-intron (ENSMUSG00000055407.14, intron 3 of 3) 3363 ENSMUSG00000109460.1 ENSMUSG00000109460 ENSMUST00000129058 Gm45591 sense_intronic Interval_54795 chr14 75154414 75155352 + 0 NA intron (ENSMUSG00000021998.16, intron 1 of 16) protein_coding-intron (ENSMUSG00000021998.16, intron 1 of 5) -17971 ENSMUSG00000089733.1 ENSMUSG00000089733 ENSMUST00000162051 Gm15628 lincRNA Interval_120032 chr4 141444528 141445430 + 0 NA intron (ENSMUSG00000006215.12, intron 1 of 2) protein_coding-intron (ENSMUSG00000006215.12, intron 1 of 15) 273 ENSMUSG00000006215.12 ENSMUSG00000006215 ENSMUST00000130482 Zbtb17 protein_coding Interval_115892 chr4 105914931 105915356 + 0 NA Intergenic Intergenic 60742 ENSMUSG00000089065.1 ENSMUSG00000089065 ENSMUST00000158440 Gm24363 misc_RNA Interval_19738 chr10 108396613 108397524 + 0 NA intron (ENSMUSG00000035873.8, intron 2 of 4) protein_coding-intron (ENSMUSG00000035873.8, intron 4 of 6) -30999 ENSMUSG00000093762.1 ENSMUSG00000093762 ENSMUST00000177317 Gm25591 miRNA Interval_114364 chr4 74300641 74301906 + 0 NA intron (ENSMUSG00000028397.13, intron 4 of 7) protein_coding-intron (ENSMUSG00000028397.13, intron 5 of 21) 38464 ENSMUSG00000028397.13 ENSMUSG00000028397 ENSMUST00000150439 Kdm4c protein_coding Interval_100618 chr2 170494846 170497962 + 0 NA promoter-TSS (ENSMUSG00000052033.13) protein_coding-promoter-TSS (ENSMUSG00000052033.13) 741 ENSMUSG00000038567.5 ENSMUSG00000038567 ENSMUST00000038824 Cyp24a1 protein_coding Interval_122236 chr5 20539784 20540161 + 0 NA intron (ENSMUSG00000040003.18, intron 12 of 20) protein_coding-intron (ENSMUSG00000040003.18, intron 12 of 22) -48624 ENSMUSG00000106240.1 ENSMUSG00000106240 ENSMUST00000196129 Gm3544 processed_pseudogene Interval_43132 chr13 24526545 24528594 + 0 NA intron (ENSMUSG00000036006.20, intron 1 of 13) protein_coding-intron (ENSMUSG00000036006.20, intron 1 of 13) 26044 ENSMUSG00000036006.20 ENSMUSG00000036006 ENSMUST00000177489 Ripor2 protein_coding Interval_102329 chr3 21951625 21951973 + 0 NA Intergenic Intergenic 46669 ENSMUSG00000106321.1 ENSMUSG00000106321 ENSMUST00000196313 Gm43674 lincRNA Interval_23962 chr11 28934444 28934942 + 0 NA Intergenic Intergenic 19026 ENSMUSG00000020467.15 ENSMUSG00000020467 ENSMUST00000139713 Efemp1 protein_coding Interval_49788 chr13 115163359 115163604 + 0 NA TTS (ENSMUSG00000114872.1) processed_pseudogene-TTS (ENSMUSG00000114872.1) 1339 ENSMUSG00000114872.1 ENSMUSG00000114872 ENSMUST00000225121 Gm18759 processed_pseudogene Interval_1997 chr1 35809658 35809947 + 0 NA intron (ENSMUSG00000101714.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000101714.1, intron 1 of 1) 2828 ENSMUSG00000101714.1 ENSMUSG00000101714 ENSMUST00000187528 Gm28415 lincRNA Interval_14854 chr10 40529162 40530045 + 0 NA Intergenic Intergenic -19289 ENSMUSG00000111251.1 ENSMUSG00000111251 ENSMUST00000214826 Gm18671 processed_pseudogene Interval_151853 chr7 127127193 127127542 + 0 NA Intergenic Intergenic -5349 ENSMUSG00000030674.5 ENSMUSG00000030674 ENSMUST00000142403 Qprt protein_coding Interval_137704 chr6 80713617 80714308 + 0 NA intron (ENSMUSG00000052581.13, intron 2 of 2) protein_coding-intron (ENSMUSG00000052581.13, intron 3 of 3) 58933 ENSMUSG00000108173.1 ENSMUSG00000108173 ENSMUST00000204106 Gm44231 TEC Interval_128894 chr5 115928832 115929376 + 0 NA intron (ENSMUSG00000029516.19, intron 3 of 37) protein_coding-intron (ENSMUSG00000029516.19, intron 12 of 46) 26674 ENSMUSG00000107263.1 ENSMUSG00000107263 ENSMUST00000201457 Gm42471 TEC Interval_104558 chr3 68056475 68057174 + 0 NA TTS (ENSMUSG00000051777.6) protein_coding-TTS (ENSMUSG00000051777.6) 164592 ENSMUSG00000102422.1 ENSMUSG00000102422 ENSMUST00000182006 Iqschfp protein_coding Interval_153485 chr7 145147786 145149142 + 0 NA Intergenic Intergenic -14532 ENSMUSG00000108967.1 ENSMUSG00000108967 ENSMUST00000207878 Gm45181 lincRNA Interval_162565 chr9 4442142 4443376 + 0 NA intron (ENSMUSG00000025892.16, intron 13 of 15) protein_coding-intron (ENSMUSG00000025892.16, intron 14 of 16) 13264 ENSMUSG00000092896.2 ENSMUSG00000092896 ENSMUST00000175155 Gm23811 miRNA Interval_20305 chr10 116761192 116762000 + 0 NA Intergenic Intergenic 32343 ENSMUSG00000112924.1 ENSMUSG00000112924 ENSMUST00000218193 4930579P08Rik lincRNA Interval_55974 chr14 103509023 103509822 + 0 NA intron (ENSMUSG00000115762.1, intron 2 of 2) lincRNA-intron (ENSMUSG00000115762.1, intron 2 of 2) -3920 ENSMUSG00000022123.9 ENSMUSG00000022123 ENSMUST00000095576 Scel protein_coding Interval_106421 chr3 96092432 96092663 + 0 NA Intergenic Intergenic 5676 ENSMUSG00000105995.1 ENSMUSG00000105995 ENSMUST00000199987 Gm43554 processed_pseudogene Interval_85781 chr19 31074120 31075388 + 0 NA intron (ENSMUSG00000052920.16, intron 3 of 17) protein_coding-intron (ENSMUSG00000052920.16, intron 3 of 17) -8083 ENSMUSG00000053536.7 ENSMUSG00000053536 ENSMUST00000066039 Cstf2t protein_coding Interval_60750 chr15 76518241 76520053 + 0 NA exon (ENSMUSG00000048385.9, exon 2 of 2) protein_coding-exon (ENSMUSG00000048385.9, exon 2 of 2) 2755 ENSMUSG00000048385.9 ENSMUSG00000048385 ENSMUST00000164703 Scrt1 protein_coding Interval_60902 chr15 77740354 77741071 + 0 NA promoter-TSS (ENSMUSG00000115979.1) TEC-promoter-TSS (ENSMUSG00000115979.1) -49 ENSMUSG00000115979.1 ENSMUSG00000115979 ENSMUST00000230156 Gm49410 TEC Interval_74499 chr17 52267141 52267455 + 0 NA Intergenic Intergenic -37269 ENSMUSG00000117076.1 ENSMUSG00000117076 ENSMUST00000232754 Gm41600 lincRNA Interval_172392 chrX 17472870 17473817 + 0 NA Intergenic Intergenic 98298 ENSMUSG00000025040.13 ENSMUSG00000025040 ENSMUST00000142638 Fundc1 protein_coding Interval_173193 chrX 73998313 73999956 + 0 NA Intergenic Intergenic -7568 ENSMUSG00000080829.1 ENSMUSG00000080829 ENSMUST00000120692 Gm8545 processed_pseudogene Interval_129351 chr5 119386814 119387471 + 0 NA Intergenic Intergenic 89897 ENSMUSG00000084548.1 ENSMUSG00000084548 ENSMUST00000122599 n-R5s175 rRNA Interval_146175 chr7 44524735 44526031 + 0 NA promoter-TSS (ENSMUSG00000038670.11) protein_coding-promoter-TSS (ENSMUSG00000038670.11) 5893 ENSMUSG00000008193.13 ENSMUSG00000008193 ENSMUST00000098483 Spib protein_coding Interval_68548 chr16 78560045 78560397 + 0 NA promoter-TSS (ENSMUSG00000116628.1) antisense-promoter-TSS (ENSMUSG00000116628.1) -95 ENSMUSG00000116628.1 ENSMUSG00000116628 ENSMUST00000231846 4930478L05Rik antisense Interval_51810 chr14 32363656 32365354 + 0 NA Intergenic Intergenic 23886 ENSMUSG00000072473.4 ENSMUSG00000072473 ENSMUST00000100723 1700024G13Rik protein_coding Interval_68438 chr16 76539330 76540331 + 0 NA Intergenic Intergenic -8965 ENSMUSG00000116701.1 ENSMUSG00000116701 ENSMUST00000232268 Gm30726 lincRNA Interval_172116 chrX 7721699 7723401 + 0 NA promoter-TSS (ENSMUSG00000039382.12) protein_coding-promoter-TSS (ENSMUSG00000039382.12) 302 ENSMUSG00000039382.12 ENSMUSG00000039382 ENSMUST00000209077 Wdr45 protein_coding Interval_6034 chr1 94269613 94269946 + 0 NA Intergenic Intergenic 65362 ENSMUSG00000100990.1 ENSMUSG00000100990 ENSMUST00000190284 Gm7891 processed_pseudogene Interval_135382 chr6 38752070 38752401 + 0 NA intron (ENSMUSG00000061436.15, intron 2 of 14) protein_coding-intron (ENSMUSG00000061436.15, intron 1 of 3) 88356 ENSMUSG00000079598.4 ENSMUSG00000079598 ENSMUST00000238216 Clec2l protein_coding Interval_28332 chr11 75245833 75247430 + 0 NA intron (ENSMUSG00000045287.6, intron 1 of 1) protein_coding-intron (ENSMUSG00000045287.6, intron 1 of 1) 52848 ENSMUSG00000045287.6 ENSMUSG00000045287 ENSMUST00000102514 Rtn4rl1 protein_coding Interval_84746 chr19 16174122 16174508 + 0 NA intron (ENSMUSG00000024639.5, intron 1 of 2) protein_coding-intron (ENSMUSG00000024639.5, intron 1 of 6) -9510 ENSMUSG00000057990.4 ENSMUSG00000057990 ENSMUST00000075293 E030024N20Rik processed_pseudogene Interval_148419 chr7 81141211 81142359 + 0 NA intron (ENSMUSG00000025726.11, intron 9 of 17) protein_coding-intron (ENSMUSG00000025726.11, intron 9 of 17) 19959 ENSMUSG00000083820.1 ENSMUSG00000083820 ENSMUST00000118488 Ndufs6b processed_pseudogene Interval_13979 chr10 25239051 25239804 + 0 NA promoter-TSS (ENSMUSG00000039166.16) protein_coding-promoter-TSS (ENSMUSG00000039166.16) -12073 ENSMUSG00000112371.1 ENSMUSG00000112371 ENSMUST00000219066 Gm7791 processed_pseudogene Interval_141322 chr6 127233640 127234513 + 0 NA exon (ENSMUSG00000062365.4, exon 1 of 1) processed_pseudogene-exon (ENSMUSG00000062365.4, exon 1 of 1) 314 ENSMUSG00000062365.4 ENSMUSG00000062365 ENSMUST00000071458 Gm4968 processed_pseudogene Interval_142752 chr6 145340214 145342029 + 0 NA Intergenic Intergenic -24513 ENSMUSG00000083962.1 ENSMUSG00000083962 ENSMUST00000118804 Gm15707 processed_pseudogene Interval_55114 chr14 78237467 78237978 + 0 NA Intergenic Intergenic 8589 ENSMUSG00000080402.1 ENSMUSG00000080402 ENSMUST00000116752 Gm23652 miRNA Interval_52960 chr14 52303890 52305467 + 0 NA exon (ENSMUSG00000022160.18, exon 1 of 1) protein_coding-exon (ENSMUSG00000022160.18, exon 1 of 1) 446 ENSMUSG00000022160.18 ENSMUSG00000022160 ENSMUST00000197394 Mettl3 protein_coding Interval_1913 chr1 34510648 34511431 + 0 NA Intergenic Intergenic 12618 ENSMUSG00000026125.9 ENSMUSG00000026125 ENSMUST00000191604 Prss39 protein_coding Interval_81269 chr18 57132462 57133727 + 0 NA promoter-TSS (ENSMUSG00000024593.15) protein_coding-promoter-TSS (ENSMUSG00000024593.15) -9692 ENSMUSG00000024593.15 ENSMUSG00000024593 ENSMUST00000139892 Megf10 protein_coding Interval_60769 chr15 76638971 76640265 + 0 NA promoter-TSS (ENSMUSG00000059323.14) protein_coding-promoter-TSS (ENSMUSG00000059323.14) -5942 ENSMUSG00000059323.14 ENSMUSG00000059323 ENSMUST00000166974 Tonsl protein_coding Interval_172819 chrX 50599885 50600565 + 0 NA intron (ENSMUSG00000085396.7, intron 9 of 19) processed_transcript-intron (ENSMUSG00000085396.7, intron 4 of 6) -35342 ENSMUSG00000085396.7 ENSMUSG00000085396 ENSMUST00000148530 Firre processed_transcript Interval_143666 chr7 14114238 14115545 + 0 NA intron (ENSMUSG00000074375.3, intron 2 of 5) protein_coding-intron (ENSMUSG00000074375.3, intron 2 of 5) 8153 ENSMUSG00000074375.3 ENSMUSG00000074375 ENSMUST00000098809 Sult2a3 protein_coding Interval_137450 chr6 72534067 72534322 + 0 NA Intergenic Intergenic -14158 ENSMUSG00000052631.15 ENSMUSG00000052631 ENSMUST00000159577 Sh2d6 protein_coding Interval_167628 chr9 71323902 71324233 + 0 NA Intergenic Intergenic -44882 ENSMUSG00000111181.1 ENSMUSG00000111181 ENSMUST00000214975 Gm48124 processed_pseudogene Interval_4869 chr1 80576503 80577142 + 0 NA intron (ENSMUSG00000038608.15, intron 15 of 56) protein_coding-intron (ENSMUSG00000038608.15, intron 15 of 55) 92742 ENSMUSG00000103192.1 ENSMUSG00000103192 ENSMUST00000194285 Gm37645 TEC Interval_85018 chr19 21580771 21581197 + 0 NA TTS (ENSMUSG00000035171.9) protein_coding-TTS (ENSMUSG00000035171.9) 28780 ENSMUSG00000079382.3 ENSMUSG00000079382 ENSMUST00000112772 Gm3443 transcribed_unitary_pseudogene Interval_6148 chr1 98071843 98074094 + 0 NA intron (ENSMUSG00000026335.16, intron 2 of 2) protein_coding-intron (ENSMUSG00000026335.16, intron 1 of 25) -15085 ENSMUSG00000026335.16 ENSMUSG00000026335 ENSMUST00000163007 Pam protein_coding Interval_94618 chr2 92701871 92702661 + 0 NA Intergenic Intergenic -39964 ENSMUSG00000085976.1 ENSMUSG00000085976 ENSMUST00000152230 Gm13816 lincRNA Interval_65843 chr16 29742677 29742888 + 0 NA Intergenic Intergenic 11530 ENSMUSG00000116814.1 ENSMUSG00000116814 ENSMUST00000232037 Gm49636 lincRNA Interval_160266 chr8 107560380 107560596 + 0 NA Intergenic Intergenic 9244 ENSMUSG00000065439.1 ENSMUSG00000065439 ENSMUST00000083505 Mir140 miRNA Interval_129377 chr5 119613236 119615528 + 0 NA intron (ENSMUSG00000087516.7, intron 3 of 3) antisense-intron (ENSMUSG00000087516.7, intron 2 of 2) -11560 ENSMUSG00000085708.1 ENSMUSG00000085708 ENSMUST00000156235 Gm16063 lincRNA Interval_134391 chr6 28151498 28152298 + 0 NA Intergenic Intergenic -17513 ENSMUSG00000024211.15 ENSMUSG00000024211 ENSMUST00000202861 Grm8 protein_coding Interval_167911 chr9 74120299 74120869 + 0 NA intron (ENSMUSG00000044976.17, intron 1 of 19) protein_coding-intron (ENSMUSG00000044976.17, intron 1 of 19) 10228 ENSMUSG00000044976.17 ENSMUSG00000044976 ENSMUST00000149439 Wdr72 protein_coding Interval_120738 chr4 150355077 150355396 + 0 NA intron (ENSMUSG00000039852.17, intron 1 of 22) protein_coding-intron (ENSMUSG00000039852.17, intron 1 of 22) 34043 ENSMUSG00000089292.1 ENSMUSG00000089292 ENSMUST00000158667 Gm23209 snRNA Interval_168692 chr9 85982933 85984988 + 0 NA Intergenic Intergenic -40760 ENSMUSG00000110946.1 ENSMUSG00000110946 ENSMUST00000213921 Gm47604 lincRNA Interval_137352 chr6 71617913 71618249 + 0 NA intron (ENSMUSG00000053470.13, intron 4 of 6) protein_coding-intron (ENSMUSG00000053470.13, intron 9 of 26) 14909 ENSMUSG00000053470.13 ENSMUSG00000053470 ENSMUST00000206597 Kdm3a protein_coding Interval_29686 chr11 86044890 86045143 + 0 NA Intergenic Intergenic 94521 ENSMUSG00000081632.1 ENSMUSG00000081632 ENSMUST00000118790 Gm11443 processed_pseudogene Interval_145679 chr7 37306815 37308479 + 0 NA Intergenic Intergenic 8382 ENSMUSG00000099715.2 ENSMUSG00000099715 ENSMUST00000190250 Gm28077 lincRNA Interval_105484 chr3 86950197 86951352 + 0 NA Intergenic Intergenic -17111 ENSMUSG00000103650.1 ENSMUSG00000103650 ENSMUST00000194284 Gm37207 processed_pseudogene Interval_50879 chr14 20406539 20406958 + 0 NA intron (ENSMUSG00000039543.16, intron 20 of 28) protein_coding-intron (ENSMUSG00000039543.16, intron 19 of 27) 8389 ENSMUSG00000084942.1 ENSMUSG00000084942 ENSMUST00000125558 7330404K18Rik antisense Interval_163584 chr9 22341417 22342116 + 0 NA intron (ENSMUSG00000036777.8, intron 1 of 3) protein_coding-intron (ENSMUSG00000036777.8, intron 20 of 23) 9490 ENSMUSG00000036777.8 ENSMUSG00000036777 ENSMUST00000215486 Anln protein_coding Interval_92638 chr2 61786161 61786469 + 0 NA intron (ENSMUSG00000026914.15, intron 4 of 5) protein_coding-intron (ENSMUSG00000026914.15, intron 10 of 11) -11865 ENSMUSG00000087794.1 ENSMUSG00000087794 ENSMUST00000157169 Gm25966 rRNA Interval_102139 chr3 18497489 18497655 + 0 NA Intergenic Intergenic -17095 ENSMUSG00000102699.1 ENSMUSG00000102699 ENSMUST00000192010 4930433B08Rik lincRNA Interval_13451 chr10 18370450 18372660 + 0 NA intron (ENSMUSG00000039835.16, intron 1 of 6) protein_coding-intron (ENSMUSG00000039835.16, intron 1 of 6) -34314 ENSMUSG00000111313.1 ENSMUSG00000111313 ENSMUST00000213578 Gm18942 processed_pseudogene Interval_20999 chr10 123128432 123128917 + 0 NA promoter-TSS (ENSMUSG00000020124.10) protein_coding-promoter-TSS (ENSMUSG00000020124.10) 50010 ENSMUSG00000112879.1 ENSMUSG00000112879 ENSMUST00000219693 Gm47726 processed_pseudogene Interval_136080 chr6 50553640 50553883 + 0 NA Intergenic Intergenic 12777 ENSMUSG00000063694.5 ENSMUSG00000063694 ENSMUST00000077766 Cycs protein_coding Interval_20696 chr10 120298306 120298816 + 0 NA Intergenic Intergenic -11289 ENSMUSG00000112672.1 ENSMUSG00000112672 ENSMUST00000219089 Gm48118 processed_pseudogene Interval_132913 chr5 148711316 148711828 + 0 NA exon (ENSMUSG00000106733.1, exon 1 of 3) lincRNA-exon (ENSMUSG00000106733.1, exon 1 of 3) 106 ENSMUSG00000106733.1 ENSMUSG00000106733 ENSMUST00000200820 Gm36186 lincRNA Interval_162911 chr9 12903232 12904690 + 0 NA Intergenic Intergenic 38528 ENSMUSG00000098228.1 ENSMUSG00000098228 ENSMUST00000182425 Gm21070 processed_pseudogene Interval_120435 chr4 148607734 148608193 + 0 NA exon (ENSMUSG00000028979.17, exon 7 of 11) protein_coding-exon (ENSMUSG00000028979.17, exon 7 of 11) 5395 ENSMUSG00000028979.17 ENSMUSG00000028979 ENSMUST00000136647 Masp2 protein_coding Interval_159389 chr8 94257528 94257866 + 0 NA intron (ENSMUSG00000032939.14, intron 4 of 22) protein_coding-intron (ENSMUSG00000032939.14, intron 3 of 21) -15729 ENSMUSG00000110442.1 ENSMUSG00000110442 ENSMUST00000212137 Gm45804 TEC Interval_162684 chr9 7795740 7796638 + 0 NA Intergenic Intergenic 11799 ENSMUSG00000093615.1 ENSMUSG00000093615 ENSMUST00000175907 Mir5618 miRNA Interval_142845 chr6 146392371 146392650 + 0 NA intron (ENSMUSG00000030287.15, intron 10 of 13) protein_coding-intron (ENSMUSG00000030287.15, intron 11 of 56) 16093 ENSMUSG00000107743.1 ENSMUSG00000107743 ENSMUST00000204247 Gm44087 TEC Interval_152996 chr7 140679691 140680350 + 0 NA Intergenic Intergenic -1931 ENSMUSG00000066122.6 ENSMUSG00000066122 ENSMUST00000084454 Olfr45 protein_coding Interval_100396 chr2 168798915 168799596 + 0 NA Intergenic Intergenic 33112 ENSMUSG00000085322.2 ENSMUSG00000085322 ENSMUST00000145105 Gm14261 antisense Interval_100190 chr2 167552820 167553283 + 0 NA promoter-TSS (ENSMUSG00000085596.1) processed_transcript-promoter-TSS (ENSMUSG00000085596.1) -263 ENSMUSG00000085596.1 ENSMUSG00000085596 ENSMUST00000127006 Gm11476 processed_transcript Interval_58251 chr15 31382202 31382492 + 0 NA Intergenic Intergenic 13985 ENSMUSG00000115406.1 ENSMUSG00000115406 ENSMUST00000227460 Gm49300 TEC Interval_170462 chr9 108141091 108141619 + 0 NA intron (ENSMUSG00000032589.14, intron 1 of 11) protein_coding-intron (ENSMUSG00000032589.14, intron 1 of 11) 4027 ENSMUSG00000102224.5 ENSMUSG00000102224 ENSMUST00000195536 4930447F24Rik processed_transcript Interval_128020 chr5 110324812 110325128 + 0 NA intron (ENSMUSG00000007080.14, intron 37 of 48) protein_coding-intron (ENSMUSG00000007080.14, intron 37 of 48) -3062 ENSMUSG00000087722.1 ENSMUSG00000087722 ENSMUST00000157097 Gm26277 snoRNA Interval_162189 chr8 125785286 125785969 + 0 NA intron (ENSMUSG00000060212.13, intron 9 of 18) protein_coding-intron (ENSMUSG00000060212.13, intron 24 of 33) 43406 ENSMUSG00000060212.13 ENSMUSG00000060212 ENSMUST00000187772 Pcnx2 protein_coding Interval_1545 chr1 25204585 25205052 + 0 NA promoter-TSS (ENSMUSG00000033569.17) protein_coding-promoter-TSS (ENSMUSG00000033569.17) 878 ENSMUSG00000033569.17 ENSMUSG00000033569 ENSMUST00000189254 Adgrb3 protein_coding Interval_146600 chr7 47312276 47313121 + 0 NA Intergenic Intergenic -2403 ENSMUSG00000099560.1 ENSMUSG00000099560 ENSMUST00000187741 Mrgprx3-ps unprocessed_pseudogene Interval_111276 chr4 16823555 16823762 + 0 NA Intergenic Intergenic 38136 ENSMUSG00000064619.1 ENSMUSG00000064619 ENSMUST00000082685 Gm23975 snRNA Interval_115769 chr4 103683057 103684026 + 0 NA intron (ENSMUSG00000028519.16, intron 1 of 3) protein_coding-intron (ENSMUSG00000028519.16, intron 1 of 9) -97141 ENSMUSG00000077514.1 ENSMUSG00000077514 ENSMUST00000104326 Gm25877 snoRNA Interval_112666 chr4 43937197 43937484 + 0 NA exon (ENSMUSG00000028476.13, exon 17 of 21) protein_coding-exon (ENSMUSG00000028476.13, exon 17 of 21) -3058 ENSMUSG00000028476.13 ENSMUSG00000028476 ENSMUST00000130415 Reck protein_coding Interval_65610 chr16 24049929 24050182 + 0 NA intron (ENSMUSG00000116290.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000116290.1, intron 1 of 1) 10149 ENSMUSG00000116290.1 ENSMUSG00000116290 ENSMUST00000230357 Gm49518 lincRNA Interval_2357 chr1 38393154 38395337 + 0 NA TTS (ENSMUSG00000087131.7) antisense-TTS (ENSMUSG00000087131.7) 9296 ENSMUSG00000087131.7 ENSMUSG00000087131 ENSMUST00000131663 Gm16152 antisense Interval_1707 chr1 31835247 31835464 + 0 NA Intergenic Intergenic 99298 ENSMUSG00000082159.2 ENSMUSG00000082159 ENSMUST00000117896 Gm7910 processed_pseudogene Interval_117067 chr4 119338614 119339512 + 0 NA TTS (ENSMUSG00000028637.16) protein_coding-TTS (ENSMUSG00000028637.16) -3618 ENSMUSG00000083836.1 ENSMUSG00000083836 ENSMUST00000118722 Ldha-ps2 processed_pseudogene Interval_66903 chr16 38431419 38432403 + 0 NA intron (ENSMUSG00000002847.7, intron 1 of 10) protein_coding-intron (ENSMUSG00000002847.7, intron 1 of 10) -14117 ENSMUSG00000002847.7 ENSMUSG00000002847 ENSMUST00000232224 Pla1a protein_coding Interval_27647 chr11 69269745 69269960 + 0 NA Intergenic Intergenic -24299 ENSMUSG00000087003.1 ENSMUSG00000087003 ENSMUST00000132834 Cntrobos antisense Interval_164959 chr9 43417734 43418108 + 0 NA Intergenic Intergenic 26517 ENSMUSG00000111829.1 ENSMUSG00000111829 ENSMUST00000216533 Gm47475 lincRNA Interval_166812 chr9 62901227 62902054 + 0 NA intron (ENSMUSG00000032405.10, intron 8 of 13) protein_coding-intron (ENSMUSG00000032405.10, intron 8 of 13) -33640 ENSMUSG00000074250.11 ENSMUSG00000074250 ENSMUST00000139570 Gm10653 transcribed_processed_pseudogene Interval_30052 chr11 88897327 88898395 + 0 NA Intergenic Intergenic -7260 ENSMUSG00000065012.1 ENSMUSG00000065012 ENSMUST00000083078 Gm23507 snRNA Interval_52993 chr14 53039759 53040199 + 0 NA promoter-TSS (ENSMUSG00000104598.1) antisense-promoter-TSS (ENSMUSG00000104598.1) -513 ENSMUSG00000104598.1 ENSMUSG00000104598 ENSMUST00000199271 Gm30214 antisense Interval_119276 chr4 136601993 136603123 + 0 NA promoter-TSS (ENSMUSG00000036940.15) protein_coding-promoter-TSS (ENSMUSG00000036940.15) 7248 ENSMUSG00000083054.1 ENSMUSG00000083054 ENSMUST00000119037 Gm12986 processed_pseudogene Interval_157921 chr8 76016497 76017268 + 0 NA intron (ENSMUSG00000110485.1, intron 6 of 9) lincRNA-intron (ENSMUSG00000110485.1, intron 6 of 9) 5173 ENSMUSG00000077537.1 ENSMUSG00000077537 ENSMUST00000104349 Gm22544 snoRNA Interval_50166 chr14 8421388 8421661 + 0 NA Intergenic Intergenic 12607 ENSMUSG00000114533.1 ENSMUSG00000114533 ENSMUST00000224382 Gm8416 processed_pseudogene Interval_32861 chr11 112305480 112305656 + 0 NA Intergenic Intergenic 198130 ENSMUSG00000085324.1 ENSMUSG00000085324 ENSMUST00000146550 Gm11680 lincRNA Interval_20623 chr10 119648936 119649436 + 0 NA intron (ENSMUSG00000034813.18, intron 1 of 21) protein_coding-intron (ENSMUSG00000034813.18, intron 1 of 22) -4878 ENSMUSG00000112106.1 ENSMUSG00000112106 ENSMUST00000218068 Gm47026 TEC Interval_146231 chr7 44861550 44861847 + 0 NA promoter-TSS (ENSMUSG00000002963.17) protein_coding-promoter-TSS (ENSMUSG00000002963.17) 3202 ENSMUSG00000002963.17 ENSMUSG00000002963 ENSMUST00000144669 Pnkp protein_coding Interval_60130 chr15 65995167 65995507 + 0 NA exon (ENSMUSG00000056258.9, exon 15 of 15) protein_coding-exon (ENSMUSG00000056258.9, exon 15 of 15) -18533 ENSMUSG00000072511.3 ENSMUSG00000072511 ENSMUST00000100584 Hhla1 protein_coding Interval_135263 chr6 37920048 37920244 + 0 NA exon (ENSMUSG00000029833.17, exon 4 of 4) protein_coding-exon (ENSMUSG00000029833.17, exon 4 of 4) 49335 ENSMUSG00000029833.17 ENSMUSG00000029833 ENSMUST00000135387 Trim24 protein_coding Interval_144445 chr7 25203498 25204185 + 0 NA exon (ENSMUSG00000054499.9, exon 5 of 5) protein_coding-exon (ENSMUSG00000054499.9, exon 5 of 5) 13884 ENSMUSG00000098325.1 ENSMUSG00000098325 ENSMUST00000184632 Mir7048 miRNA Interval_174498 chrX 153599720 153599954 + 0 NA Intergenic Intergenic -23243 ENSMUSG00000065221.1 ENSMUSG00000065221 ENSMUST00000083287 Gm25793 snRNA Interval_70720 chr17 13843767 13846016 + 0 NA intron (ENSMUSG00000068036.16, intron 12 of 32) protein_coding-intron (ENSMUSG00000068036.16, intron 12 of 18) 17912 ENSMUSG00000089883.1 ENSMUSG00000089883 ENSMUST00000160079 Gm3355 processed_pseudogene Interval_46359 chr13 64185098 64186535 + 0 NA TTS (ENSMUSG00000021476.9) protein_coding-TTS (ENSMUSG00000021476.9) 1313 ENSMUSG00000021476.9 ENSMUSG00000021476 ENSMUST00000223377 Habp4 protein_coding Interval_144799 chr7 28330206 28330686 + 0 NA intron (ENSMUSG00000003435.9, intron 3 of 28) protein_coding-intron (ENSMUSG00000003435.9, intron 4 of 29) 8260 ENSMUSG00000003435.9 ENSMUSG00000003435 ENSMUST00000208726 Supt5 protein_coding Interval_87124 chr19 46317250 46319312 + 0 NA promoter-TSS (ENSMUSG00000037126.16) protein_coding-promoter-TSS (ENSMUSG00000037126.16) -3977 ENSMUSG00000037126.16 ENSMUSG00000037126 ENSMUST00000225072 Psd protein_coding Interval_62674 chr15 96179037 96180572 + 0 NA intron (ENSMUSG00000097536.2, intron 5 of 6) lincRNA-intron (ENSMUSG00000097536.2, intron 5 of 6) 74183 ENSMUSG00000097619.8 ENSMUSG00000097619 ENSMUST00000229950 4833422M21Rik processed_transcript Interval_90397 chr2 30164556 30165023 + 0 NA Intergenic Intergenic 5391 ENSMUSG00000085401.2 ENSMUSG00000085401 ENSMUST00000120862 Slc39a1-ps processed_pseudogene Interval_166408 chr9 59234972 59235249 + 0 NA promoter-TSS (ENSMUSG00000110789.1) lincRNA-promoter-TSS (ENSMUSG00000110789.1) -39 ENSMUSG00000110789.1 ENSMUSG00000110789 ENSMUST00000215275 Gm33053 lincRNA Interval_146554 chr7 46798330 46798771 + 0 NA intron (ENSMUSG00000006599.13, intron 2 of 4) protein_coding-intron (ENSMUSG00000006599.13, intron 1 of 14) 2436 ENSMUSG00000006599.13 ENSMUSG00000006599 ENSMUST00000144708 Gtf2h1 protein_coding Interval_32146 chr11 105589219 105590477 + 0 NA promoter-TSS (ENSMUSG00000053580.16) protein_coding-promoter-TSS (ENSMUSG00000053580.16) -7777 ENSMUSG00000080681.1 ENSMUSG00000080681 ENSMUST00000117031 Gm23990 miRNA Interval_141174 chr6 125418270 125419342 + 0 NA Intergenic Intergenic -38013 ENSMUSG00000038167.6 ENSMUSG00000038167 ENSMUST00000042647 Plekhg6 protein_coding Interval_55237 chr14 79558678 79559117 + 0 NA intron (ENSMUSG00000036461.16, intron 2 of 7) protein_coding-intron (ENSMUSG00000036461.16, intron 2 of 8) 3395 ENSMUSG00000093684.2 ENSMUSG00000093684 ENSMUST00000176930 Gm27857 miRNA Interval_89063 chr2 15170606 15171234 + 0 NA Intergenic Intergenic 43320 ENSMUSG00000083860.2 ENSMUSG00000083860 ENSMUST00000118938 Gm13313 processed_pseudogene Interval_47429 chr13 84023658 84024346 + 0 NA Intergenic Intergenic -25563 ENSMUSG00000114930.1 ENSMUSG00000114930 ENSMUST00000225255 Gm8447 processed_pseudogene Interval_30515 chr11 94874979 94875389 + 0 NA Intergenic Intergenic -13425 ENSMUSG00000043522.8 ENSMUSG00000043522 ENSMUST00000124176 A430060F13Rik unprocessed_pseudogene Interval_146523 chr7 46606087 46607960 + 0 NA intron (ENSMUSG00000030839.12, intron 8 of 11) protein_coding-intron (ENSMUSG00000030839.12, intron 8 of 10) 32781 ENSMUSG00000030839.12 ENSMUSG00000030839 ENSMUST00000137988 Sergef protein_coding Interval_69600 chr16 94549783 94550436 + 0 NA Intergenic Intergenic -20798 ENSMUSG00000022897.15 ENSMUSG00000022897 ENSMUST00000134383 Dyrk1a protein_coding Interval_77551 chr17 91416551 91416743 + 0 NA Intergenic Intergenic -69075 ENSMUSG00000117471.1 ENSMUSG00000117471 ENSMUST00000233999 Gm49988 processed_pseudogene Interval_127981 chr5 110057460 110058768 + 0 NA intron (ENSMUSG00000090963.2, intron 1 of 3) protein_coding-intron (ENSMUSG00000090963.2, intron 1 of 3) 14399 ENSMUSG00000090963.2 ENSMUSG00000090963 ENSMUST00000167969 Gm17655 protein_coding Interval_9322 chr1 156222515 156223733 + 0 NA Intergenic Intergenic 4169 ENSMUSG00000102932.1 ENSMUSG00000102932 ENSMUST00000193704 Gm38113 processed_pseudogene Interval_142760 chr6 145416963 145418195 + 0 NA intron (ENSMUSG00000054966.13, intron 3 of 10) protein_coding-intron (ENSMUSG00000054966.13, intron 4 of 8) 16502 ENSMUSG00000054966.13 ENSMUSG00000054966 ENSMUST00000142122 Lmntd1 protein_coding Interval_172161 chrX 8096432 8097502 + 0 NA promoter-TSS (ENSMUSG00000086404.1) processed_transcript-promoter-TSS (ENSMUSG00000086404.1) -120 ENSMUSG00000086404.1 ENSMUSG00000086404 ENSMUST00000123120 Gm6787 processed_transcript Interval_88069 chr19 58798993 58800221 + 0 NA TTS (ENSMUSG00000025092.7) protein_coding-TTS (ENSMUSG00000025092.7) -6324 ENSMUSG00000026931.10 ENSMUSG00000026931 ENSMUST00000166692 1700019N19Rik protein_coding Interval_138466 chr6 88454527 88455184 + 0 NA Intergenic Intergenic -8328 ENSMUSG00000033216.9 ENSMUSG00000033216 ENSMUST00000205014 Eefsec protein_coding Interval_57864 chr15 23486246 23486928 + 0 NA Intergenic Intergenic -3304 ENSMUSG00000115193.1 ENSMUSG00000115193 ENSMUST00000227365 Gm6533 processed_pseudogene Interval_148642 chr7 83745112 83746697 + 0 NA promoter-TSS (ENSMUSG00000001741.12) protein_coding-promoter-TSS (ENSMUSG00000001741.12) -5967 ENSMUSG00000001741.12 ENSMUSG00000001741 ENSMUST00000156553 Il16 protein_coding Interval_68239 chr16 70362290 70362734 + 0 NA TTS (ENSMUSG00000022707.16) protein_coding-TTS (ENSMUSG00000022707.16) 48448 ENSMUSG00000022707.16 ENSMUSG00000022707 ENSMUST00000169432 Gbe1 protein_coding Interval_136453 chr6 54601407 54601905 + 0 NA intron (ENSMUSG00000005225.15, intron 1 of 13) protein_coding-intron (ENSMUSG00000005225.15, intron 1 of 13) 6545 ENSMUSG00000005225.15 ENSMUSG00000005225 ENSMUST00000101385 Plekha8 protein_coding Interval_74600 chr17 53619013 53620933 + 0 NA intron (ENSMUSG00000000708.14, intron 2 of 5) protein_coding-intron (ENSMUSG00000000708.14, intron 2 of 17) -21310 ENSMUSG00000096517.1 ENSMUSG00000096517 ENSMUST00000180049 Gm6919 processed_pseudogene Interval_20512 chr10 118125722 118126427 + 0 NA Intergenic Intergenic 13557 ENSMUSG00000112470.1 ENSMUSG00000112470 ENSMUST00000218667 5330439M10Rik lincRNA Interval_102276 chr3 20317267 20317606 + 0 NA intron (ENSMUSG00000054988.9, intron 1 of 2) protein_coding-intron (ENSMUSG00000054988.9, intron 1 of 1) 9029 ENSMUSG00000105208.1 ENSMUSG00000105208 ENSMUST00000196460 Gm43525 lincRNA Interval_74650 chr17 54347952 54348282 + 0 NA promoter-TSS (ENSMUSG00000117006.1) processed_pseudogene-promoter-TSS (ENSMUSG00000117006.1) -524 ENSMUSG00000117006.1 ENSMUSG00000117006 ENSMUST00000233783 Gm9224 processed_pseudogene Interval_39921 chr12 99776312 99776943 + 0 NA intron (ENSMUSG00000021176.6, intron 6 of 6) protein_coding-intron (ENSMUSG00000021176.6, intron 5 of 5) -14373 ENSMUSG00000113877.1 ENSMUSG00000113877 ENSMUST00000220762 Gm47208 TEC Interval_46116 chr13 61833387 61834114 + 0 NA intron (ENSMUSG00000113626.1, intron 1 of 2) transcribed_processed_pseudogene-intron (ENSMUSG00000113626.1, intron 1 of 2) -10086 ENSMUSG00000080451.1 ENSMUSG00000080451 ENSMUST00000116801 Gm24193 miRNA Interval_38595 chr12 80338916 80340195 + 0 NA exon (ENSMUSG00000049106.7, exon 9 of 9) protein_coding-exon (ENSMUSG00000049106.7, exon 9 of 9) 37137 ENSMUSG00000049106.7 ENSMUSG00000049106 ENSMUST00000218498 Dcaf5 protein_coding Interval_162411 chr8 128264402 128264684 + 0 NA Intergenic Intergenic 13682 ENSMUSG00000099326.1 ENSMUSG00000099326 ENSMUST00000184910 Mir21c miRNA Interval_144170 chr7 19781851 19783022 + 0 NA intron (ENSMUSG00000040525.13, intron 2 of 4) protein_coding-intron (ENSMUSG00000040525.13, intron 9 of 11) 3004 ENSMUSG00000040525.13 ENSMUSG00000040525 ENSMUST00000131602 Cblc protein_coding Interval_150260 chr7 109082491 109083730 + 0 NA intron (ENSMUSG00000048330.14, intron 1 of 1) protein_coding-intron (ENSMUSG00000048330.14, intron 1 of 5) -6868 ENSMUSG00000094199.1 ENSMUSG00000094199 ENSMUST00000179144 Gm25450 snRNA Interval_60448 chr15 73802100 73802916 + 0 NA intron (ENSMUSG00000072487.11, intron 4 of 29) protein_coding-intron (ENSMUSG00000072487.11, intron 2 of 10) 7388 ENSMUSG00000083380.1 ENSMUSG00000083380 ENSMUST00000120938 Ndufb4c processed_pseudogene Interval_171610 chr9 119522167 119522406 + 0 NA intron (ENSMUSG00000032511.17, intron 15 of 27) protein_coding-intron (ENSMUSG00000032511.17, intron 14 of 26) 41217 ENSMUSG00000032511.17 ENSMUSG00000032511 ENSMUST00000138934 Scn5a protein_coding Interval_44455 chr13 44921706 44922046 + 0 NA TTS (ENSMUSG00000038518.15) protein_coding-TTS (ENSMUSG00000038518.15) 80176 ENSMUSG00000057531.14 ENSMUSG00000057531 ENSMUST00000223524 Dtnbp1 protein_coding Interval_110875 chr4 9297659 9297916 + 0 NA intron (ENSMUSG00000041216.15, intron 2 of 5) protein_coding-intron (ENSMUSG00000041216.15, intron 2 of 5) -10396 ENSMUSG00000086233.1 ENSMUSG00000086233 ENSMUST00000142744 Gm11816 antisense Interval_172869 chrX 52375061 52375314 + 0 NA intron (ENSMUSG00000055653.13, intron 5 of 7) protein_coding-intron (ENSMUSG00000055653.13, intron 5 of 7) 2994 ENSMUSG00000105738.1 ENSMUSG00000105738 ENSMUST00000196833 Mir6384 miRNA Interval_62448 chr15 93078566 93078830 + 0 NA Intergenic Intergenic -10532 ENSMUSG00000115921.1 ENSMUSG00000115921 ENSMUST00000229620 Gm18685 processed_pseudogene Interval_2188 chr1 36922785 36923356 + 0 NA exon (ENSMUSG00000103159.1, exon 1 of 1) TEC-exon (ENSMUSG00000103159.1, exon 1 of 1) 3278 ENSMUSG00000103159.1 ENSMUSG00000103159 ENSMUST00000194249 F830112A20Rik TEC Interval_153563 chr8 3432316 3433911 + 0 NA intron (ENSMUSG00000004568.13, intron 14 of 28) protein_coding-intron (ENSMUSG00000004568.13, intron 5 of 19) -24926 ENSMUSG00000108955.1 ENSMUSG00000108955 ENSMUST00000207266 Gm44775 TEC Interval_171786 chr9 121125535 121125968 + 0 NA intron (ENSMUSG00000040936.15, intron 32 of 33) protein_coding-intron (ENSMUSG00000040936.15, intron 31 of 33) -116591 ENSMUSG00000084706.1 ENSMUSG00000084706 ENSMUST00000122757 Gm22987 misc_RNA Interval_63689 chr15 102843334 102844020 + 0 NA Intergenic Intergenic 46182 ENSMUSG00000116500.1 ENSMUSG00000116500 ENSMUST00000229994 Gm36560 lincRNA Interval_30023 chr11 88743355 88743628 + 0 NA promoter-TSS (ENSMUSG00000085646.1) lincRNA-promoter-TSS (ENSMUSG00000085646.1) -122 ENSMUSG00000085646.1 ENSMUSG00000085646 ENSMUST00000134567 Gm11493 lincRNA Interval_132033 chr5 142410260 142411467 + 0 NA intron (ENSMUSG00000056493.9, intron 1 of 8) protein_coding-intron (ENSMUSG00000056493.9, intron 1 of 8) 9366 ENSMUSG00000056493.9 ENSMUSG00000056493 ENSMUST00000072837 Foxk1 protein_coding Interval_144093 chr7 19395008 19395360 + 0 NA TTS (ENSMUSG00000040714.14) protein_coding-TTS (ENSMUSG00000040714.14) 798 ENSMUSG00000040714.14 ENSMUSG00000040714 ENSMUST00000125246 Klc3 protein_coding Interval_155223 chr8 27936287 27936486 + 0 NA Intergenic Intergenic 147880 ENSMUSG00000110343.1 ENSMUSG00000110343 ENSMUST00000210185 Gm45751 TEC Interval_145992 chr7 42904590 42905017 + 0 NA intron (ENSMUSG00000090751.2, intron 3 of 3) protein_coding-intron (ENSMUSG00000090751.2, intron 5 of 5) 26207 ENSMUSG00000092191.1 ENSMUSG00000092191 ENSMUST00000172692 Gm7211 processed_pseudogene Interval_40953 chr12 110221399 110222298 + 0 NA Intergenic Intergenic 14514 ENSMUSG00000113193.1 ENSMUSG00000113193 ENSMUST00000221773 Gm40576 lincRNA Interval_108732 chr3 130780820 130781657 + 0 NA Intergenic Intergenic 21973 ENSMUSG00000105716.1 ENSMUSG00000105716 ENSMUST00000196697 Gm43522 lincRNA Interval_137720 chr6 81636140 81636346 + 0 NA Intergenic Intergenic -2068 ENSMUSG00000065212.1 ENSMUSG00000065212 ENSMUST00000083278 Gm26264 snRNA Interval_149005 chr7 91542432 91543273 + 0 NA promoter-TSS (ENSMUSG00000052572.19) protein_coding-promoter-TSS (ENSMUSG00000052572.19) 42 ENSMUSG00000052572.19 ENSMUSG00000052572 ENSMUST00000207891 Dlg2 protein_coding Interval_93128 chr2 70457627 70457837 + 0 NA Intergenic Intergenic -1250 ENSMUSG00000047965.9 ENSMUSG00000047965 ENSMUST00000140507 Rpl9-ps7 processed_pseudogene Interval_1435 chr1 23307945 23308179 + 0 NA Intergenic Intergenic 14333 ENSMUSG00000100775.1 ENSMUSG00000100775 ENSMUST00000190910 Gm29107 lincRNA Interval_131156 chr5 135472547 135472782 + 0 NA exon (ENSMUSG00000106758.1, exon 1 of 1) TEC-exon (ENSMUSG00000106758.1, exon 1 of 1) 755 ENSMUSG00000106758.1 ENSMUSG00000106758 ENSMUST00000201839 Gm42731 TEC Interval_155071 chr8 26136824 26137256 + 0 NA intron (ENSMUSG00000013878.18, intron 6 of 7) protein_coding-intron (ENSMUSG00000013878.18, intron 6 of 7) -4398 ENSMUSG00000110120.1 ENSMUSG00000110120 ENSMUST00000209486 Gm45251 TEC Interval_9686 chr1 161027011 161028159 + 0 NA intron (ENSMUSG00000043467.19, intron 2 of 2) protein_coding-intron (ENSMUSG00000043467.19, intron 4 of 4) -2997 ENSMUSG00000104016.1 ENSMUSG00000104016 ENSMUST00000194567 Gm37362 antisense Interval_139466 chr6 100355816 100356886 + 0 NA Intergenic Intergenic -69603 ENSMUSG00000072872.3 ENSMUSG00000072872 ENSMUST00000205164 Rybp protein_coding Interval_142268 chr6 140280985 140281742 + 0 NA Intergenic Intergenic 15093 ENSMUSG00000107572.1 ENSMUSG00000107572 ENSMUST00000204425 Gm3961 TEC Interval_75573 chr17 68273456 68274362 + 0 NA intron (ENSMUSG00000041565.17, intron 1 of 6) protein_coding-intron (ENSMUSG00000041565.17, intron 1 of 19) -86173 ENSMUSG00000117193.1 ENSMUSG00000117193 ENSMUST00000233387 Gm36252 lincRNA Interval_157574 chr8 71494895 71495384 + 0 NA intron (ENSMUSG00000007610.15, intron 9 of 10) protein_coding-intron (ENSMUSG00000007610.15, intron 9 of 10) 7036 ENSMUSG00000007610.15 ENSMUSG00000007610 ENSMUST00000146551 Gtpbp3 protein_coding Interval_152759 chr7 137309135 137310537 + 0 NA intron (ENSMUSG00000010476.14, intron 4 of 15) protein_coding-intron (ENSMUSG00000010476.14, intron 4 of 15) 4150 ENSMUSG00000010476.14 ENSMUSG00000010476 ENSMUST00000209864 Ebf3 protein_coding Interval_92850 chr2 66463886 66464139 + 0 NA intron (ENSMUSG00000087301.7, intron 1 of 3) antisense-intron (ENSMUSG00000087301.7, intron 1 of 2) -16605 ENSMUSG00000080855.3 ENSMUSG00000080855 ENSMUST00000118070 Rpl35-ps1 processed_pseudogene Interval_37971 chr12 73507001 73507503 + 0 NA intron (ENSMUSG00000113099.1, intron 1 of 3) lincRNA-intron (ENSMUSG00000113099.1, intron 1 of 3) 1418 ENSMUSG00000113099.1 ENSMUSG00000113099 ENSMUST00000222678 Gm34016 lincRNA Interval_132719 chr5 147361453 147361722 + 0 NA TTS (ENSMUSG00000042817.15) protein_coding-TTS (ENSMUSG00000042817.15) -35253 ENSMUSG00000106939.1 ENSMUSG00000106939 ENSMUST00000201667 Gm29778 processed_pseudogene Interval_151582 chr7 124133485 124133725 + 0 NA intron (ENSMUSG00000078591.1, intron 1 of 1) protein_coding-intron (ENSMUSG00000078591.1, intron 1 of 1) -12676 ENSMUSG00000077176.1 ENSMUSG00000077176 ENSMUST00000103988 Gm25759 snoRNA Interval_173579 chrX 99852891 99853947 + 0 NA Intergenic Intergenic 32398 ENSMUSG00000071719.2 ENSMUSG00000071719 ENSMUST00000096363 Tmem28 protein_coding Interval_145811 chr7 39505966 39506148 + 0 NA Intergenic Intergenic -11709 ENSMUSG00000068959.6 ENSMUSG00000068959 ENSMUST00000108015 Zfp619 protein_coding Interval_98866 chr2 155647584 155648124 + 0 NA intron (ENSMUSG00000038324.13, intron 3 of 3) protein_coding-intron (ENSMUSG00000038324.13, intron 9 of 18) 5170 ENSMUSG00000088695.1 ENSMUSG00000088695 ENSMUST00000158070 Gm22334 snoRNA Interval_96758 chr2 127788410 127789886 + 0 NA promoter-TSS (ENSMUSG00000027378.16) protein_coding-promoter-TSS (ENSMUSG00000027378.16) 3340 ENSMUSG00000051319.6 ENSMUSG00000051319 ENSMUST00000135091 Mtln protein_coding Interval_119386 chr4 137386688 137389165 + 0 NA exon (ENSMUSG00000101493.1, exon 1 of 1) lincRNA-exon (ENSMUSG00000101493.1, exon 1 of 1) 456 ENSMUSG00000101493.1 ENSMUSG00000101493 ENSMUST00000189334 2810405F17Rik lincRNA Interval_33653 chr11 117762096 117762408 + 0 NA TTS (ENSMUSG00000025571.13) protein_coding-TTS (ENSMUSG00000025571.13) 13021 ENSMUSG00000025571.13 ENSMUSG00000025571 ENSMUST00000141287 Tnrc6c protein_coding Interval_143084 chr6 149148453 149149255 + 0 NA intron (ENSMUSG00000039958.17, intron 3 of 3) protein_coding-intron (ENSMUSG00000039958.17, intron 3 of 3) 7341 ENSMUSG00000039958.17 ENSMUSG00000039958 ENSMUST00000111551 Etfbkmt protein_coding Interval_72580 chr17 30803396 30803914 + 0 NA promoter-TSS (ENSMUSG00000033826.10) protein_coding-promoter-TSS (ENSMUSG00000033826.10) -21526 ENSMUSG00000094785.1 ENSMUSG00000094785 ENSMUST00000083205 Gm24661 snRNA Interval_65750 chr16 27139248 27140288 + 0 NA Intergenic Intergenic -167721 ENSMUSG00000052276.8 ENSMUSG00000052276 ENSMUST00000066852 Ostn protein_coding Interval_129911 chr5 123035197 123035852 + 0 NA promoter-TSS (ENSMUSG00000105107.1) TEC-promoter-TSS (ENSMUSG00000105107.1) -476 ENSMUSG00000105107.1 ENSMUSG00000105107 ENSMUST00000197455 Gm43412 TEC Interval_44609 chr13 46689882 46691063 + 0 NA intron (ENSMUSG00000021374.10, intron 16 of 21) protein_coding-intron (ENSMUSG00000021374.10, intron 16 of 21) 17345 ENSMUSG00000021374.10 ENSMUSG00000021374 ENSMUST00000183299 Nup153 protein_coding Interval_164355 chr9 35667913 35668430 + 0 NA intron (ENSMUSG00000074452.13, intron 4 of 10) protein_coding-intron (ENSMUSG00000074452.13, intron 4 of 10) -1528 ENSMUSG00000074452.13 ENSMUSG00000074452 ENSMUST00000217565 Pate2 protein_coding Interval_64850 chr16 16533383 16533781 + 0 NA intron (ENSMUSG00000022788.16, intron 1 of 8) protein_coding-intron (ENSMUSG00000022788.16, intron 1 of 6) -8741 ENSMUSG00000089861.1 ENSMUSG00000089861 ENSMUST00000160015 Gm16139 processed_pseudogene Interval_100605 chr2 170421925 170422172 + 0 NA intron (ENSMUSG00000013523.13, intron 1 of 4) protein_coding-intron (ENSMUSG00000013523.13, intron 1 of 12) 16867 ENSMUSG00000086970.1 ENSMUSG00000086970 ENSMUST00000133586 Bcas1os1 antisense Interval_120598 chr4 149602098 149602598 + 0 NA intron (ENSMUSG00000039953.13, intron 1 of 3) protein_coding-intron (ENSMUSG00000039953.13, intron 1 of 18) -24782 ENSMUSG00000039953.13 ENSMUSG00000039953 ENSMUST00000151895 Clstn1 protein_coding Interval_137029 chr6 66589718 66590767 + 0 NA Intergenic Intergenic 13032 ENSMUSG00000107710.1 ENSMUSG00000107710 ENSMUST00000204772 Gm5307 processed_pseudogene Interval_120748 chr4 150415361 150415700 + 0 NA intron (ENSMUSG00000039852.17, intron 1 of 3) protein_coding-intron (ENSMUSG00000039852.17, intron 2 of 22) 94337 ENSMUSG00000089292.1 ENSMUSG00000089292 ENSMUST00000158667 Gm23209 snRNA Interval_6821 chr1 119886072 119886722 + 0 NA Intergenic Intergenic -11064 ENSMUSG00000100636.1 ENSMUSG00000100636 ENSMUST00000190750 Gm3551 processed_pseudogene Interval_149172 chr7 95865310 95865963 + 0 NA Intergenic Intergenic 47750 ENSMUSG00000108628.1 ENSMUSG00000108628 ENSMUST00000205327 Gm5037 processed_pseudogene Interval_145902 chr7 41566214 41567074 + 0 NA intron (ENSMUSG00000090744.7, intron 1 of 1) protein_coding-intron (ENSMUSG00000090744.7, intron 1 of 3) 7018 ENSMUSG00000090744.7 ENSMUSG00000090744 ENSMUST00000171059 Gm6871 protein_coding Interval_6678 chr1 118689719 118690763 + 0 NA Intergenic Intergenic 8420 ENSMUSG00000088363.1 ENSMUSG00000088363 ENSMUST00000157738 Gm23497 snRNA Interval_60947 chr15 78078863 78079039 + 0 NA intron (ENSMUSG00000019146.2, intron 1 of 3) protein_coding-intron (ENSMUSG00000019146.2, intron 1 of 3) -40755 ENSMUSG00000092375.1 ENSMUSG00000092375 ENSMUST00000174277 A730060N03Rik antisense Interval_68719 chr16 84974157 84974480 + 0 NA intron (ENSMUSG00000115518.1, intron 2 of 3) protein_coding-intron (ENSMUSG00000022892.11, intron 12 of 15) 2104 ENSMUSG00000115518.1 ENSMUSG00000115518 ENSMUST00000227835 Gm10791 antisense Interval_1659 chr1 30853109 30853880 + 0 NA intron (ENSMUSG00000048874.15, intron 2 of 6) protein_coding-intron (ENSMUSG00000048874.15, intron 1 of 14) 15044 ENSMUSG00000104315.1 ENSMUSG00000104315 ENSMUST00000192050 Gm37906 TEC Interval_58580 chr15 36341978 36342675 + 0 NA TTS (ENSMUSG00000115715.1) processed_transcript-TTS (ENSMUSG00000115715.1) 7428 ENSMUSG00000115715.1 ENSMUSG00000115715 ENSMUST00000228118 Gm33936 processed_transcript Interval_63794 chr15 103482198 103483491 + 0 NA intron (ENSMUSG00000022488.9, intron 2 of 11) protein_coding-intron (ENSMUSG00000022488.9, intron 21 of 30) 3696 ENSMUSG00000022488.9 ENSMUSG00000022488 ENSMUST00000230276 Nckap1l protein_coding Interval_114570 chr4 82550661 82550907 + 0 NA intron (ENSMUSG00000008575.17, intron 1 of 1) protein_coding-intron (ENSMUSG00000008575.17, intron 1 of 1) 36535 ENSMUSG00000084851.1 ENSMUSG00000084851 ENSMUST00000137477 Gm11267 sense_intronic Interval_127993 chr5 110135299 110136320 + 0 NA promoter-TSS (ENSMUSG00000014668.15) protein_coding-promoter-TSS (ENSMUSG00000014668.15) -33 ENSMUSG00000014668.15 ENSMUSG00000014668 ENSMUST00000197005 Chfr protein_coding Interval_145701 chr7 37514697 37514960 + 0 NA intron (ENSMUSG00000043456.17, intron 1 of 3) protein_coding-intron (ENSMUSG00000043456.17, intron 4 of 5) 3026 ENSMUSG00000108330.1 ENSMUSG00000108330 ENSMUST00000205702 Gm44882 TEC Interval_83413 chr18 84982577 84983070 + 0 NA Intergenic Intergenic 30512 ENSMUSG00000118255.1 ENSMUSG00000118255 ENSMUST00000238005 Gm50369 processed_pseudogene Interval_69158 chr16 91043642 91045823 + 0 NA promoter-TSS (ENSMUSG00000022974.12) protein_coding-promoter-TSS (ENSMUSG00000022974.12) 76 ENSMUSG00000085398.1 ENSMUSG00000085398 ENSMUST00000147848 4931406G06Rik antisense Interval_62657 chr15 96004313 96004534 + 0 NA Intergenic Intergenic -10294 ENSMUSG00000115049.1 ENSMUSG00000115049 ENSMUST00000227616 Gm49172 processed_transcript Interval_108743 chr3 130945861 130947615 + 0 NA Intergenic Intergenic -9401 ENSMUSG00000106095.2 ENSMUSG00000106095 ENSMUST00000196438 2010110G14Rik lincRNA Interval_37255 chr12 63164981 63166032 + 0 NA Intergenic Intergenic -4675 ENSMUSG00000113393.1 ENSMUSG00000113393 ENSMUST00000221219 Gm48415 processed_pseudogene Interval_44188 chr13 41747031 41747378 + 0 NA Intergenic Intergenic -53579 ENSMUSG00000085759.1 ENSMUSG00000085759 ENSMUST00000154159 1700061E18Rik antisense Interval_81339 chr18 58411924 58412423 + 0 NA Intergenic Intergenic -144084 ENSMUSG00000024600.8 ENSMUSG00000024600 ENSMUST00000025500 Slc27a6 protein_coding Interval_173483 chrX 95155971 95157115 + 0 NA intron (ENSMUSG00000025656.17, intron 1 of 8) protein_coding-intron (ENSMUSG00000025656.17, intron 1 of 8) 39909 ENSMUSG00000025656.17 ENSMUSG00000025656 ENSMUST00000196012 Arhgef9 protein_coding Interval_140850 chr6 122328564 122328842 + 0 NA intron (ENSMUSG00000040669.14, intron 5 of 13) protein_coding-intron (ENSMUSG00000040669.14, intron 5 of 13) 10909 ENSMUSG00000040669.14 ENSMUSG00000040669 ENSMUST00000161210 Phc1 protein_coding Interval_68784 chr16 86313435 86313602 + 0 NA Intergenic Intergenic 77347 ENSMUSG00000116799.1 ENSMUSG00000116799 ENSMUST00000231827 Gm32357 lincRNA Interval_192 JH792828.1 291405 292267 + 0 NA NA NA NA NA Interval_27755 chr11 69800251 69801325 + 0 NA intron (ENSMUSG00000042826.13, intron 1 of 4) protein_coding-intron (ENSMUSG00000042826.13, intron 1 of 5) 1069 ENSMUSG00000042826.13 ENSMUSG00000042826 ENSMUST00000102585 Fgf11 protein_coding Interval_139414 chr6 99954636 99955463 + 0 NA Intergenic Intergenic -23500 ENSMUSG00000107528.1 ENSMUSG00000107528 ENSMUST00000204919 Gm44442 lincRNA Interval_40305 chr12 103388349 103389312 + 0 NA promoter-TSS (ENSMUSG00000021203.15) protein_coding-promoter-TSS (ENSMUSG00000021203.15) -3824 ENSMUSG00000021203.15 ENSMUSG00000021203 ENSMUST00000179684 Otub2 protein_coding Interval_75397 chr17 66342963 66344236 + 0 NA TTS (ENSMUSG00000052105.17) protein_coding-TTS (ENSMUSG00000052105.17) -24087 ENSMUSG00000117010.1 ENSMUSG00000117010 ENSMUST00000233050 Gm49933 processed_pseudogene Interval_80920 chr18 50179915 50180253 + 0 NA intron (ENSMUSG00000024507.6, intron 20 of 23) protein_coding-intron (ENSMUSG00000024507.6, intron 20 of 23) 29060 ENSMUSG00000117714.1 ENSMUSG00000117714 ENSMUST00000238008 Gm50439 processed_pseudogene Interval_61065 chr15 79027926 79028839 + 0 NA promoter-TSS (ENSMUSG00000096210.2) protein_coding-promoter-TSS (ENSMUSG00000096210.2) -68 ENSMUSG00000096210.2 ENSMUSG00000096210 ENSMUST00000180086 H1f0 protein_coding Interval_124377 chr5 45084778 45084965 + 0 NA intron (ENSMUSG00000029092.9, intron 5 of 5) lincRNA-intron (ENSMUSG00000029092.9, intron 5 of 5) 90822 ENSMUSG00000029092.9 ENSMUSG00000029092 ENSMUST00000030975 D5Ertd615e lincRNA Interval_11840 chr1 186195239 186195462 + 0 NA intron (ENSMUSG00000103449.1, intron 2 of 3) lincRNA-intron (ENSMUSG00000103449.1, intron 2 of 3) 13093 ENSMUSG00000102790.1 ENSMUSG00000102790 ENSMUST00000193401 Gm37272 TEC Interval_131824 chr5 140140150 140140666 + 0 NA intron (ENSMUSG00000029554.15, intron 1 of 6) protein_coding-intron (ENSMUSG00000029554.15, intron 12 of 17) 11079 ENSMUSG00000106497.1 ENSMUSG00000106497 ENSMUST00000200614 Gm43195 TEC Interval_29138 chr11 80577941 80578369 + 0 NA intron (ENSMUSG00000035441.14, intron 20 of 21) protein_coding-intron (ENSMUSG00000035441.14, intron 20 of 21) -69049 ENSMUSG00000085078.1 ENSMUSG00000085078 ENSMUST00000133400 C030013C21Rik sense_intronic Interval_95705 chr2 114533908 114534185 + 0 NA intron (ENSMUSG00000057147.13, intron 6 of 6) protein_coding-intron (ENSMUSG00000057147.13, intron 6 of 7) -120379 ENSMUSG00000084785.1 ENSMUSG00000084785 ENSMUST00000153726 Gm13972 processed_transcript Interval_26980 chr11 62044601 62045130 + 0 NA exon (ENSMUSG00000042331.13, exon 3 of 3) protein_coding-exon (ENSMUSG00000042331.13, exon 3 of 3) 26001 ENSMUSG00000042331.13 ENSMUSG00000042331 ENSMUST00000202179 Specc1 protein_coding Interval_29517 chr11 84618511 84619136 + 0 NA Intergenic Intergenic 93163 ENSMUSG00000087211.7 ENSMUSG00000087211 ENSMUST00000128121 Lhx1os lincRNA Interval_74133 chr17 46698087 46698565 + 0 NA intron (ENSMUSG00000059409.9, intron 2 of 14) protein_coding-intron (ENSMUSG00000059409.9, intron 2 of 14) 6785 ENSMUSG00000059409.9 ENSMUSG00000059409 ENSMUST00000233757 Ppp2r5d protein_coding Interval_110295 chr3 156123270 156123557 + 0 NA Intergenic Intergenic 62522 ENSMUSG00000105949.1 ENSMUSG00000105949 ENSMUST00000195916 Gm6510 processed_pseudogene Interval_24474 chr11 33533325 33534934 + 0 NA Intergenic Intergenic 44830 ENSMUSG00000020159.8 ENSMUSG00000020159 ENSMUST00000135350 Gabrp protein_coding Interval_86628 chr19 42147237 42148865 + 0 NA exon (ENSMUSG00000044345.9, exon 1 of 2) protein_coding-exon (ENSMUSG00000044345.9, exon 1 of 2) 343 ENSMUSG00000044345.9 ENSMUSG00000044345 ENSMUST00000184186 Marveld1 protein_coding Interval_48759 chr13 102857616 102858010 + 0 NA intron (ENSMUSG00000034751.17, intron 3 of 27) protein_coding-intron (ENSMUSG00000034751.17, intron 2 of 27) 95378 ENSMUSG00000090329.1 ENSMUSG00000090329 ENSMUST00000170645 Gm17160 antisense Interval_162842 chr9 10230799 10232118 + 0 NA intron (ENSMUSG00000039488.15, intron 3 of 24) protein_coding-intron (ENSMUSG00000039488.15, intron 1 of 22) 59129 ENSMUSG00000093959.1 ENSMUSG00000093959 ENSMUST00000178287 Gm24496 miRNA Interval_108589 chr3 129338510 129339106 + 0 NA Intergenic Intergenic -6544 ENSMUSG00000028024.14 ENSMUSG00000028024 ENSMUST00000165217 Enpep protein_coding Interval_53538 chr14 58616698 58617512 + 0 NA Intergenic Intergenic 33295 ENSMUSG00000077201.1 ENSMUSG00000077201 ENSMUST00000104013 Gm25614 snoRNA Interval_105709 chr3 88692328 88692633 + 0 NA promoter-TSS (ENSMUSG00000028060.14) protein_coding-promoter-TSS (ENSMUSG00000028060.14) -1450 ENSMUSG00000105448.1 ENSMUSG00000105448 ENSMUST00000197479 Gm25820 scaRNA Interval_75560 chr17 68025290 68026046 + 0 NA TTS (ENSMUSG00000117243.1) lincRNA-TTS (ENSMUSG00000117243.1) 88718 ENSMUSG00000117208.1 ENSMUSG00000117208 ENSMUST00000233735 Gm49945 lincRNA Interval_46503 chr13 66668297 66668907 + 0 NA Intergenic Intergenic 4727 ENSMUSG00000074830.4 ENSMUSG00000074830 ENSMUST00000071320 Zfp640 transcribed_processed_pseudogene Interval_108527 chr3 128000337 128001008 + 0 NA Intergenic Intergenic 29963 ENSMUSG00000106437.1 ENSMUSG00000106437 ENSMUST00000199122 Gm35667 lincRNA Interval_78953 chr18 22674231 22675219 + 0 NA Intergenic Intergenic 330479 ENSMUSG00000045215.17 ENSMUSG00000045215 ENSMUST00000097655 Asxl3 protein_coding Interval_92099 chr2 53183647 53184664 + 0 NA intron (ENSMUSG00000061136.16, intron 2 of 25) protein_coding-intron (ENSMUSG00000061136.16, intron 2 of 25) 7032 ENSMUSG00000061136.16 ENSMUSG00000061136 ENSMUST00000132031 Prpf40a protein_coding Interval_14465 chr10 34127071 34128470 + 0 NA exon (ENSMUSG00000046031.7, exon 1 of 2) protein_coding-exon (ENSMUSG00000046031.7, exon 1 of 2) 214 ENSMUSG00000046031.7 ENSMUSG00000046031 ENSMUST00000062784 Calhm6 protein_coding Interval_112025 chr4 33309279 33310818 + 0 NA promoter-TSS (ENSMUSG00000028274.17) protein_coding-promoter-TSS (ENSMUSG00000028274.17) 89 ENSMUSG00000086127.1 ENSMUSG00000086127 ENSMUST00000132553 Gm11934 processed_transcript Interval_159768 chr8 102076864 102077088 + 0 NA Intergenic Intergenic -446918 ENSMUSG00000088596.1 ENSMUSG00000088596 ENSMUST00000157971 Gm24602 snRNA Interval_23883 chr11 27608388 27608780 + 0 NA Intergenic Intergenic -100484 ENSMUSG00000082243.1 ENSMUSG00000082243 ENSMUST00000122413 Gm3810 processed_pseudogene Interval_145071 chr7 29879979 29880563 + 0 NA Intergenic Intergenic 18592 ENSMUSG00000062040.14 ENSMUSG00000062040 ENSMUST00000160411 Zfp27 protein_coding Interval_57247 chr15 8121395 8121771 + 0 NA intron (ENSMUSG00000022142.8, intron 10 of 33) protein_coding-intron (ENSMUSG00000022142.8, intron 10 of 34) -22374 ENSMUSG00000039828.7 ENSMUSG00000039828 ENSMUST00000227371 Wdr70 protein_coding Interval_107853 chr3 116283967 116284930 + 0 NA intron (ENSMUSG00000033502.15, intron 13 of 13) protein_coding-intron (ENSMUSG00000033502.15, intron 15 of 15) -30985 ENSMUSG00000068696.6 ENSMUSG00000068696 ENSMUST00000199128 Gpr88 protein_coding Interval_115747 chr4 103269465 103269762 + 0 NA intron (ENSMUSG00000028520.12, intron 2 of 7) protein_coding-intron (ENSMUSG00000028520.12, intron 3 of 8) 21250 ENSMUSG00000028520.12 ENSMUSG00000028520 ENSMUST00000097944 4921539E11Rik protein_coding Interval_72975 chr17 33908545 33910196 + 0 NA promoter-TSS (ENSMUSG00000002307.16) protein_coding-promoter-TSS (ENSMUSG00000002307.16) -128 ENSMUSG00000002307.16 ENSMUSG00000002307 ENSMUST00000173279 Daxx protein_coding Interval_137369 chr6 71746905 71747703 + 0 NA intron (ENSMUSG00000052852.8, intron 1 of 8) protein_coding-intron (ENSMUSG00000052852.8, intron 1 of 6) 39434 ENSMUSG00000052852.8 ENSMUSG00000052852 ENSMUST00000212631 Reep1 protein_coding Interval_122856 chr5 26189445 26189870 + 0 NA Intergenic Intergenic -68034 ENSMUSG00000059645.6 ENSMUSG00000059645 ENSMUST00000074148 Gm7361 protein_coding Interval_16876 chr10 69389393 69389822 + 0 NA Intergenic Intergenic -9389 ENSMUSG00000069601.14 ENSMUSG00000069601 ENSMUST00000183001 Ank3 protein_coding Interval_77381 chr17 88336844 88337078 + 0 NA intron (ENSMUSG00000117351.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000117351.1, intron 1 of 1) 5521 ENSMUSG00000088791.1 ENSMUSG00000088791 ENSMUST00000158166 Gm22542 snRNA Interval_14066 chr10 26434173 26434419 + 0 NA Intergenic Intergenic -50202 ENSMUSG00000112045.1 ENSMUSG00000112045 ENSMUST00000217918 Gm5649 processed_pseudogene Interval_167925 chr9 74348641 74350823 + 0 NA Intergenic Intergenic -12878 ENSMUSG00000084725.2 ENSMUSG00000084725 ENSMUST00000122776 Gm24141 snRNA Interval_166707 chr9 62171100 62172001 + 0 NA Intergenic Intergenic -48956 ENSMUSG00000092696.1 ENSMUSG00000092696 ENSMUST00000174955 Mir5133 miRNA Interval_26660 chr11 59524861 59526743 + 0 NA intron (ENSMUSG00000020472.14, intron 1 of 1) protein_coding-intron (ENSMUSG00000020472.14, intron 1 of 2) 949 ENSMUSG00000020472.14 ENSMUSG00000020472 ENSMUST00000139707 Zkscan17 protein_coding Interval_78298 chr18 11810521 11811136 + 0 NA Intergenic Intergenic 29610 ENSMUSG00000084565.1 ENSMUSG00000084565 ENSMUST00000122616 Mir1901 miRNA Interval_172843 chrX 51800632 51801368 + 0 NA intron (ENSMUSG00000055780.10, intron 2 of 8) protein_coding-intron (ENSMUSG00000055780.10, intron 1 of 7) 233 ENSMUSG00000055780.10 ENSMUSG00000055780 ENSMUST00000114869 Usp26 protein_coding Interval_9726 chr1 161301118 161301893 + 0 NA Intergenic Intergenic -2491 ENSMUSG00000104163.1 ENSMUSG00000104163 ENSMUST00000194329 Gm19057 processed_pseudogene Interval_53145 chr14 54701351 54701927 + 0 NA Intergenic Intergenic -2839 ENSMUSG00000114865.2 ENSMUSG00000114865 ENSMUST00000227947 Gm29776 protein_coding Interval_149562 chr7 99583610 99583865 + 0 NA intron (ENSMUSG00000018909.15, intron 3 of 4) protein_coding-intron (ENSMUSG00000018909.15, intron 3 of 14) -12897 ENSMUSG00000108850.1 ENSMUSG00000108850 ENSMUST00000207191 Gm44914 TEC Interval_89648 chr2 23989596 23990799 + 0 NA Intergenic Intergenic 58882 ENSMUSG00000026986.14 ENSMUSG00000026986 ENSMUST00000114497 Hnmt protein_coding Interval_7906 chr1 134507780 134508620 + 0 NA exon (ENSMUSG00000042229.9, exon 2 of 2) protein_coding-exon (ENSMUSG00000042229.9, exon 2 of 2) 2862 ENSMUSG00000077202.1 ENSMUSG00000077202 ENSMUST00000104014 Gm25612 snoRNA Interval_60949 chr15 78119306 78120199 + 0 NA promoter-TSS (ENSMUSG00000092375.1) antisense-promoter-TSS (ENSMUSG00000092375.1) 46 ENSMUSG00000092375.1 ENSMUSG00000092375 ENSMUST00000174277 A730060N03Rik antisense Interval_128234 chr5 111917440 111918485 + 0 NA Intergenic Intergenic 26273 ENSMUSG00000106060.1 ENSMUSG00000106060 ENSMUST00000197648 Gm42488 lincRNA Interval_94154 chr2 84726830 84727840 + 0 NA promoter-TSS (ENSMUSG00000027079.15) protein_coding-promoter-TSS (ENSMUSG00000027079.15) -93 ENSMUSG00000027079.15 ENSMUSG00000027079 ENSMUST00000138231 Clp1 protein_coding Interval_114463 chr4 79399029 79399297 + 0 NA Intergenic Intergenic 71455 ENSMUSG00000083496.1 ENSMUSG00000083496 ENSMUST00000121853 Gm11263 processed_pseudogene Interval_164306 chr9 35188645 35189403 + 0 NA TTS (ENSMUSG00000032041.15) protein_coding-TTS (ENSMUSG00000032041.15) 361 ENSMUSG00000110774.1 ENSMUSG00000110774 ENSMUST00000214606 Gm39318 antisense Interval_69854 chr16 97578740 97578906 + 0 NA intron (ENSMUSG00000000385.8, intron 5 of 8) protein_coding-intron (ENSMUSG00000000385.8, intron 5 of 13) -11486 ENSMUSG00000000385.8 ENSMUSG00000000385 ENSMUST00000232141 Tmprss2 protein_coding Interval_52284 chr14 43895872 43896216 + 0 NA intron (ENSMUSG00000115272.1, intron 2 of 2) lincRNA-intron (ENSMUSG00000115272.1, intron 2 of 2) 5994 ENSMUSG00000089816.1 ENSMUSG00000089816 ENSMUST00000161935 Ear-ps8 unprocessed_pseudogene Interval_39157 chr12 85498949 85499245 + 0 NA Intergenic Intergenic 24406 ENSMUSG00000021250.13 ENSMUSG00000021250 ENSMUST00000134311 Fos protein_coding Interval_31575 chr11 101464294 101466271 + 0 NA promoter-TSS (ENSMUSG00000001313.12) protein_coding-promoter-TSS (ENSMUSG00000001313.12) 283 ENSMUSG00000001313.12 ENSMUSG00000001313 ENSMUST00000001347 Rnd2 protein_coding Interval_139166 chr6 96678976 96679237 + 0 NA Intergenic Intergenic -118242 ENSMUSG00000077598.1 ENSMUSG00000077598 ENSMUST00000104410 Gm26011 snRNA Interval_147891 chr7 75134688 75135556 + 0 NA intron (ENSMUSG00000053025.13, intron 5 of 7) protein_coding-intron (ENSMUSG00000053025.13, intron 9 of 12) 12604 ENSMUSG00000053025.13 ENSMUSG00000053025 ENSMUST00000206236 Sv2b protein_coding Interval_68360 chr16 74135967 74137110 + 0 NA intron (ENSMUSG00000052516.19, intron 2 of 21) protein_coding-intron (ENSMUSG00000052516.19, intron 2 of 25) 42296 ENSMUSG00000116740.1 ENSMUSG00000116740 ENSMUST00000231533 Gm49659 TEC Interval_115842 chr4 105194791 105196599 + 0 NA intron (ENSMUSG00000028517.8, intron 2 of 5) protein_coding-intron (ENSMUSG00000028517.8, intron 2 of 5) 38348 ENSMUSG00000028517.8 ENSMUSG00000028517 ENSMUST00000064139 Plpp3 protein_coding Interval_82150 chr18 68057512 68059188 + 0 NA intron (ENSMUSG00000024544.9, intron 1 of 5) protein_coding-intron (ENSMUSG00000024544.9, intron 1 of 5) 60024 ENSMUSG00000117891.1 ENSMUSG00000117891 ENSMUST00000236198 Gm41764 antisense Interval_92243 chr2 57282703 57283321 + 0 NA intron (ENSMUSG00000026827.12, intron 2 of 16) protein_coding-intron (ENSMUSG00000026827.12, intron 2 of 16) -7326 ENSMUSG00000084292.1 ENSMUSG00000084292 ENSMUST00000118714 Gm13535 processed_pseudogene Interval_136812 chr6 60784873 60785629 + 0 NA intron (ENSMUSG00000025889.13, intron 4 of 5) protein_coding-intron (ENSMUSG00000025889.13, intron 4 of 5) 10616 ENSMUSG00000108168.1 ENSMUSG00000108168 ENSMUST00000204452 Gm43864 TEC Interval_133527 chr6 6159331 6160965 + 0 NA intron (ENSMUSG00000015112.15, intron 3 of 17) protein_coding-intron (ENSMUSG00000015112.15, intron 3 of 17) 13803 ENSMUSG00000015112.15 ENSMUSG00000015112 ENSMUST00000177698 Slc25a13 protein_coding Interval_168079 chr9 75985425 75985876 + 0 NA intron (ENSMUSG00000097836.1, intron 2 of 4) antisense-intron (ENSMUSG00000097836.1, intron 2 of 4) -14623 ENSMUSG00000093025.1 ENSMUSG00000093025 ENSMUST00000175284 Gm25300 snRNA Interval_4656 chr1 75741499 75742590 + 0 NA Intergenic Intergenic 105654 ENSMUSG00000082012.1 ENSMUSG00000082012 ENSMUST00000121823 Gm5257 processed_pseudogene Interval_15681 chr10 53474789 53475991 + 0 NA TTS (ENSMUSG00000056219.7) processed_pseudogene-TTS (ENSMUSG00000056219.7) 426 ENSMUSG00000056219.7 ENSMUSG00000056219 ENSMUST00000168554 Tmem229b-ps processed_pseudogene Interval_43245 chr13 26837175 26837498 + 0 NA Intergenic Intergenic -49550 ENSMUSG00000081653.1 ENSMUSG00000081653 ENSMUST00000121974 Gm11354 processed_pseudogene Interval_12628 chr10 4002728 4003194 + 0 NA intron (ENSMUSG00000040675.17, intron 7 of 27) protein_coding-intron (ENSMUSG00000040675.17, intron 7 of 27) 10590 ENSMUSG00000082247.1 ENSMUSG00000082247 ENSMUST00000119524 Gm16074 processed_pseudogene Interval_167176 chr9 65860921 65861268 + 0 NA intron (ENSMUSG00000032386.15, intron 10 of 14) protein_coding-intron (ENSMUSG00000032386.15, intron 7 of 12) 22927 ENSMUSG00000079915.2 ENSMUSG00000079915 ENSMUST00000116032 Gm16073 processed_pseudogene Interval_119575 chr4 138452614 138456354 + 0 NA exon (ENSMUSG00000046447.3, exon 1 of 2) protein_coding-exon (ENSMUSG00000046447.3, exon 1 of 2) 170 ENSMUSG00000046447.3 ENSMUSG00000046447 ENSMUST00000050918 Camk2n1 protein_coding Interval_71551 chr17 24506233 24507488 + 0 NA exon (ENSMUSG00000033597.9, exon 19 of 20) protein_coding-exon (ENSMUSG00000033597.9, exon 19 of 20) 5182 ENSMUSG00000033597.9 ENSMUSG00000033597 ENSMUST00000235032 Caskin1 protein_coding Interval_84647 chr19 14642697 14643130 + 0 NA Intergenic Intergenic -15754 ENSMUSG00000103488.1 ENSMUSG00000103488 ENSMUST00000193515 Gm37997 TEC Interval_153301 chr7 143467648 143467988 + 0 NA Intergenic Intergenic -5950 ENSMUSG00000000154.16 ENSMUSG00000000154 ENSMUST00000105917 Slc22a18 protein_coding Interval_64940 chr16 17387459 17387707 + 0 NA intron (ENSMUSG00000041720.14, intron 2 of 54) protein_coding-intron (ENSMUSG00000041720.14, intron 2 of 54) -18403 ENSMUSG00000022765.10 ENSMUSG00000022765 ENSMUST00000023449 Snap29 protein_coding Interval_151367 chr7 121835554 121835934 + 0 NA Intergenic Intergenic 3321 ENSMUSG00000108410.1 ENSMUSG00000108410 ENSMUST00000205603 Gm44740 TEC Interval_16 GL456211.1 86024 87179 + 0 NA NA NA NA NA Interval_117567 chr4 124703688 124704473 + 0 NA intron (ENSMUSG00000032643.12, intron 1 of 4) protein_coding-intron (ENSMUSG00000032643.12, intron 1 of 5) 3361 ENSMUSG00000032643.12 ENSMUSG00000032643 ENSMUST00000038684 Fhl3 protein_coding Interval_2590 chr1 40968025 40968829 + 0 NA Intergenic Intergenic -104195 ENSMUSG00000094136.2 ENSMUSG00000094136 ENSMUST00000178542 Gm5973 processed_pseudogene Interval_172398 chrX 17571402 17572478 + 0 NA promoter-TSS (ENSMUSG00000025040.13) protein_coding-promoter-TSS (ENSMUSG00000025040.13) -299 ENSMUSG00000025040.13 ENSMUSG00000025040 ENSMUST00000142638 Fundc1 protein_coding Interval_16145 chr10 61023493 61024781 + 0 NA Intergenic Intergenic -7166 ENSMUSG00000093568.1 ENSMUSG00000093568 ENSMUST00000177492 Gm20611 lincRNA Interval_136615 chr6 56704031 56704864 + 0 NA intron (ENSMUSG00000091625.8, intron 1 of 3) protein_coding-intron (ENSMUSG00000091625.8, intron 1 of 4) 263 ENSMUSG00000091625.8 ENSMUSG00000091625 ENSMUST00000176595 Lsm5 protein_coding Interval_150414 chr7 110258173 110259576 + 0 NA intron (ENSMUSG00000031015.8, intron 3 of 4) protein_coding-intron (ENSMUSG00000031015.8, intron 3 of 11) 22653 ENSMUSG00000109799.1 ENSMUSG00000109799 ENSMUST00000210796 Gm45515 antisense Interval_166293 chr9 58124643 58126101 + 0 NA intron (ENSMUSG00000032327.14, intron 2 of 7) protein_coding-intron (ENSMUSG00000032327.14, intron 1 of 3) -6549 ENSMUSG00000037716.15 ENSMUSG00000037716 ENSMUST00000098681 Ccdc33 protein_coding Interval_122239 chr5 20568484 20568802 + 0 NA intron (ENSMUSG00000040003.18, intron 10 of 15) protein_coding-intron (ENSMUSG00000040003.18, intron 15 of 22) -19953 ENSMUSG00000106240.1 ENSMUSG00000106240 ENSMUST00000196129 Gm3544 processed_pseudogene Interval_138596 chr6 90048873 90049206 + 0 NA Intergenic Intergenic -7587 ENSMUSG00000092588.1 ENSMUSG00000092588 ENSMUST00000172957 Gm20534 unprocessed_pseudogene Interval_52526 chr14 47326897 47327245 + 0 NA Intergenic Intergenic -6015 ENSMUSG00000115728.1 ENSMUSG00000115728 ENSMUST00000227470 Gm49190 processed_pseudogene Interval_96480 chr2 124724946 124725192 + 0 NA Intergenic Intergenic 16414 ENSMUSG00000087450.1 ENSMUSG00000087450 ENSMUST00000137397 Gm13994 lincRNA Interval_97473 chr2 136958950 136959328 + 0 NA intron (ENSMUSG00000027281.16, intron 4 of 4) protein_coding-intron (ENSMUSG00000027281.16, intron 2 of 5) 53596 ENSMUSG00000027281.16 ENSMUSG00000027281 ENSMUST00000180277 Slx4ip protein_coding Interval_128935 chr5 116174503 116174910 + 0 NA intron (ENSMUSG00000043913.14, intron 4 of 5) protein_coding-intron (ENSMUSG00000043913.14, intron 4 of 13) 51092 ENSMUSG00000086655.1 ENSMUSG00000086655 ENSMUST00000127792 C330018A13Rik antisense Interval_135269 chr6 37948630 37949143 + 0 NA exon (ENSMUSG00000029833.17, exon 1 of 3) protein_coding-exon (ENSMUSG00000029833.17, exon 1 of 3) 69725 ENSMUSG00000029830.15 ENSMUSG00000029830 ENSMUST00000040486 Svopl protein_coding Interval_92524 chr2 60290663 60291755 + 0 NA TTS (ENSMUSG00000026980.15) protein_coding-TTS (ENSMUSG00000026980.15) -6721 ENSMUSG00000060703.12 ENSMUSG00000060703 ENSMUST00000074606 Cd302 protein_coding Interval_47779 chr13 92687012 92688012 + 0 NA intron (ENSMUSG00000021703.9, intron 5 of 11) protein_coding-intron (ENSMUSG00000021703.9, intron 5 of 11) -18270 ENSMUSG00000021703.9 ENSMUSG00000021703 ENSMUST00000224458 Serinc5 protein_coding Interval_83003 chr18 80295485 80296687 + 0 NA exon (ENSMUSG00000059852.7, exon 4 of 4) protein_coding-exon (ENSMUSG00000059852.7, exon 4 of 4) 7594 ENSMUSG00000102959.1 ENSMUSG00000102959 ENSMUST00000192763 Gm37015 TEC Interval_74199 chr17 47092023 47092233 + 0 NA Intergenic Intergenic -49088 ENSMUSG00000064043.13 ENSMUSG00000064043 ENSMUST00000190020 Trerf1 processed_transcript Interval_164047 chr9 31130281 31132196 + 0 NA intron (ENSMUSG00000031995.9, intron 1 of 7) protein_coding-intron (ENSMUSG00000031995.9, intron 1 of 18) -27700 ENSMUSG00000031995.9 ENSMUSG00000031995 ENSMUST00000123557 St14 protein_coding Interval_126474 chr5 88796755 88796964 + 0 NA intron (ENSMUSG00000105640.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000105640.1, intron 1 of 1) 2963 ENSMUSG00000105640.1 ENSMUSG00000105640 ENSMUST00000197195 Gm42912 lincRNA Interval_113620 chr4 57049128 57049656 + 0 NA intron (ENSMUSG00000028434.12, intron 15 of 25) protein_coding-intron (ENSMUSG00000028434.12, intron 15 of 25) 21167 ENSMUSG00000028434.12 ENSMUSG00000028434 ENSMUST00000133859 Epb41l4b protein_coding Interval_22057 chr11 6044453 6044777 + 0 NA intron (ENSMUSG00000057897.14, intron 1 of 5) protein_coding-intron (ENSMUSG00000057897.14, intron 1 of 18) -60477 ENSMUSG00000057897.14 ENSMUSG00000057897 ENSMUST00000129098 Camk2b protein_coding Interval_142476 chr6 142720404 142721000 + 0 NA Intergenic Intergenic -18429 ENSMUSG00000030249.15 ENSMUSG00000030249 ENSMUST00000204870 Abcc9 protein_coding Interval_62372 chr15 91272151 91273177 + 0 NA intron (ENSMUSG00000036298.10, intron 9 of 9) protein_coding-intron (ENSMUSG00000036298.10, intron 9 of 9) 73170 ENSMUSG00000078932.8 ENSMUSG00000078932 ENSMUST00000109284 CN725425 protein_coding Interval_138585 chr6 89613819 89615430 + 0 NA Intergenic Intergenic -19020 ENSMUSG00000030086.16 ENSMUSG00000030086 ENSMUST00000204654 Chchd6 protein_coding Interval_110772 chr4 8199522 8200837 + 0 NA intron (ENSMUSG00000041261.9, intron 3 of 8) protein_coding-intron (ENSMUSG00000041261.9, intron 3 of 8) -32826 ENSMUSG00000079993.2 ENSMUSG00000079993 ENSMUST00000116110 Gm11799 processed_pseudogene Interval_40678 chr12 107027467 107029890 + 0 NA Intergenic Intergenic 70995 ENSMUSG00000085120.1 ENSMUSG00000085120 ENSMUST00000143652 Gm16086 lincRNA Interval_139340 chr6 99099572 99100269 + 0 NA intron (ENSMUSG00000030067.17, intron 1 of 15) protein_coding-intron (ENSMUSG00000030067.17, intron 1 of 15) -23863 ENSMUSG00000105902.1 ENSMUSG00000105902 ENSMUST00000200105 Gm49348 miRNA Interval_72712 chr17 31693352 31693925 + 0 NA Intergenic Intergenic -3213 ENSMUSG00000117656.1 ENSMUSG00000117656 ENSMUST00000237283 Gm50225 lincRNA Interval_133730 chr6 10424669 10425003 + 0 NA Intergenic Intergenic 90540 ENSMUSG00000107762.1 ENSMUSG00000107762 ENSMUST00000204122 Gm18421 processed_pseudogene Interval_1193 chr1 16801138 16801351 + 0 NA Intergenic Intergenic -31106 ENSMUSG00000091020.3 ENSMUSG00000091020 ENSMUST00000071842 Gm5828 processed_pseudogene Interval_150774 chr7 114290479 114291842 + 0 NA Intergenic Intergenic -15093 ENSMUSG00000030751.18 ENSMUSG00000030751 ENSMUST00000210966 Psma1 protein_coding Interval_122398 chr5 21979638 21979846 + 0 NA exon (ENSMUSG00000042453.14, exon 33 of 64) protein_coding-exon (ENSMUSG00000042453.14, exon 33 of 64) -21756 ENSMUSG00000105766.1 ENSMUSG00000105766 ENSMUST00000198176 Gm19666 TEC Interval_170623 chr9 109597617 109597835 + 0 NA Intergenic Intergenic -23502 ENSMUSG00000106495.1 ENSMUSG00000106495 ENSMUST00000198533 Gm42755 TEC Interval_34074 chr11 120362009 120362639 + 0 NA exon (ENSMUSG00000025380.2, exon 1 of 5) protein_coding-exon (ENSMUSG00000025380.2, exon 1 of 5) -4218 ENSMUSG00000025380.2 ENSMUSG00000025380 ENSMUST00000130476 Fscn2 protein_coding Interval_22401 chr11 9569968 9570784 + 0 NA intron (ENSMUSG00000004668.14, intron 50 of 61) protein_coding-intron (ENSMUSG00000004668.14, intron 50 of 61) 135247 ENSMUSG00000104137.1 ENSMUSG00000104137 ENSMUST00000195362 Gm36954 TEC Interval_94771 chr2 94200769 94201186 + 0 NA intron (ENSMUSG00000075020.6, intron 3 of 4) lincRNA-intron (ENSMUSG00000075020.6, intron 3 of 5) -16847 ENSMUSG00000093033.1 ENSMUSG00000093033 ENSMUST00000175292 Gm23630 miRNA Interval_55965 chr14 103413539 103414383 + 0 NA Intergenic Intergenic -10944 ENSMUSG00000115099.1 ENSMUSG00000115099 ENSMUST00000226705 1700087I21Rik lincRNA Interval_117384 chr4 123373660 123373971 + 0 NA intron (ENSMUSG00000028649.21, intron 81 of 93) protein_coding-intron (ENSMUSG00000028649.21, intron 80 of 92) -31012 ENSMUSG00000032726.12 ENSMUSG00000032726 ENSMUST00000040496 Bmp8a protein_coding Interval_136001 chr6 49360561 49360872 + 0 NA Intergenic Intergenic -26763 ENSMUSG00000047115.15 ENSMUSG00000047115 ENSMUST00000203182 Fam221a protein_coding Interval_163028 chr9 14653808 14654474 + 0 NA Intergenic Intergenic -8881 ENSMUSG00000111085.1 ENSMUSG00000111085 ENSMUST00000214920 Gm7607 lincRNA Interval_134817 chr6 31811267 31811589 + 0 NA intron (ENSMUSG00000087379.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000087379.1, intron 1 of 2) 24753 ENSMUSG00000087379.1 ENSMUSG00000087379 ENSMUST00000153328 Gm13849 lincRNA Interval_83205 chr18 82758625 82760621 + 0 NA promoter-TSS (ENSMUSG00000101773.1) lincRNA-promoter-TSS (ENSMUSG00000101773.1) -582 ENSMUSG00000101773.1 ENSMUSG00000101773 ENSMUST00000188435 2210420H20Rik lincRNA Interval_127031 chr5 99742008 99742530 + 0 NA TTS (ENSMUSG00000105218.4) lincRNA-TTS (ENSMUSG00000105218.4) 11704 ENSMUSG00000105218.4 ENSMUSG00000105218 ENSMUST00000197852 Gm38413 lincRNA Interval_81756 chr18 64438555 64439393 + 0 NA Intergenic Intergenic -10305 ENSMUSG00000118375.1 ENSMUSG00000118375 ENSMUST00000237830 Gm36804 processed_pseudogene Interval_141331 chr6 127329903 127330926 + 0 NA Intergenic Intergenic -4557 ENSMUSG00000106843.1 ENSMUSG00000106843 ENSMUST00000201914 Gm42458 TEC Interval_124763 chr5 53723992 53724244 + 0 NA Intergenic Intergenic -16558 ENSMUSG00000029193.7 ENSMUSG00000029193 ENSMUST00000202946 Cckar protein_coding Interval_62771 chr15 96766587 96767404 + 0 NA promoter-TSS (ENSMUSG00000095638.2) processed_pseudogene-promoter-TSS (ENSMUSG00000095638.2) 83 ENSMUSG00000095638.2 ENSMUSG00000095638 ENSMUST00000177677 Gm8888 processed_pseudogene Interval_62979 chr15 98456623 98456980 + 0 NA exon (ENSMUSG00000032987.9, exon 1 of 1) protein_coding-exon (ENSMUSG00000032987.9, exon 1 of 1) 4213 ENSMUSG00000032987.9 ENSMUSG00000032987 ENSMUST00000109163 Olfr281 protein_coding Interval_97047 chr2 130767373 130768235 + 0 NA intron (ENSMUSG00000027309.18, intron 17 of 20) protein_coding-intron (ENSMUSG00000027309.18, intron 17 of 36) -28304 ENSMUSG00000027309.18 ENSMUSG00000027309 ENSMUST00000146975 4930402H24Rik protein_coding Interval_108258 chr3 123085635 123086595 + 0 NA intron (ENSMUSG00000050315.14, intron 1 of 1) protein_coding-intron (ENSMUSG00000050315.14, intron 4 of 4) -42380 ENSMUSG00000106114.1 ENSMUSG00000106114 ENSMUST00000197420 Gm43286 processed_pseudogene Interval_115323 chr4 96330951 96331134 + 0 NA intron (ENSMUSG00000066097.6, intron 4 of 8) protein_coding-intron (ENSMUSG00000066097.6, intron 4 of 8) 17620 ENSMUSG00000066097.6 ENSMUSG00000066097 ENSMUST00000015368 Cyp2j11 protein_coding Interval_59614 chr15 56126231 56126636 + 0 NA Intergenic Intergenic 45956 ENSMUSG00000114969.1 ENSMUSG00000114969 ENSMUST00000227090 Hba-ps3 processed_pseudogene Interval_99148 chr2 157485336 157487700 + 0 NA Intergenic Intergenic 35510 ENSMUSG00000081740.3 ENSMUSG00000081740 ENSMUST00000117142 Gm14279 processed_pseudogene Interval_156553 chr8 50982844 50983116 + 0 NA Intergenic Intergenic -65983 ENSMUSG00000110246.1 ENSMUSG00000110246 ENSMUST00000211313 C130073E24Rik lincRNA Interval_28708 chr11 77859054 77861294 + 0 NA exon (ENSMUSG00000000631.20, exon 4 of 5) protein_coding-exon (ENSMUSG00000000631.20, exon 4 of 5) 24370 ENSMUSG00000017453.4 ENSMUSG00000017453 ENSMUST00000155401 Pipox protein_coding Interval_94575 chr2 92381422 92381630 + 0 NA TTS (ENSMUSG00000027222.14) protein_coding-TTS (ENSMUSG00000027222.14) -1392 ENSMUSG00000044916.10 ENSMUSG00000044916 ENSMUST00000111280 1700029I15Rik protein_coding Interval_8132 chr1 135906742 135906953 + 0 NA intron (ENSMUSG00000026413.12, intron 2 of 13) protein_coding-intron (ENSMUSG00000026413.12, intron 2 of 13) -7758 ENSMUSG00000102414.1 ENSMUSG00000102414 ENSMUST00000191612 Gm36938 TEC Interval_34343 chr12 3512298 3512523 + 0 NA Intergenic Intergenic 10858 ENSMUSG00000112105.1 ENSMUSG00000112105 ENSMUST00000219719 Rps7-ps2 processed_pseudogene Interval_42667 chr13 17795964 17796484 + 0 NA intron (ENSMUSG00000041297.8, intron 1 of 13) protein_coding-intron (ENSMUSG00000041297.8, intron 1 of 13) 8873 ENSMUSG00000041297.8 ENSMUSG00000041297 ENSMUST00000221775 Cdk13 protein_coding Interval_94515 chr2 91833808 91834105 + 0 NA intron (ENSMUSG00000040506.16, intron 11 of 17) protein_coding-intron (ENSMUSG00000040506.16, intron 10 of 16) 86972 ENSMUSG00000075036.1 ENSMUSG00000075036 ENSMUST00000099710 Gm10805 pseudogene Interval_89345 chr2 19580997 19582051 + 0 NA Intergenic Intergenic -27610 ENSMUSG00000026734.9 ENSMUSG00000026734 ENSMUST00000131199 4921504E06Rik protein_coding Interval_10293 chr1 168163574 168164274 + 0 NA intron (ENSMUSG00000052534.15, intron 7 of 7) protein_coding-intron (ENSMUSG00000052534.15, intron 6 of 6) 159785 ENSMUSG00000093538.2 ENSMUSG00000093538 ENSMUST00000177351 Gm20711 antisense Interval_122306 chr5 21120118 21120445 + 0 NA promoter-TSS (ENSMUSG00000096269.3) processed_pseudogene-promoter-TSS (ENSMUSG00000096269.3) -759 ENSMUSG00000096269.3 ENSMUSG00000096269 ENSMUST00000181182 Rpl31-ps21 processed_pseudogene Interval_174330 chrX 144404728 144405277 + 0 NA intron (ENSMUSG00000041710.4, intron 7 of 10) protein_coding-intron (ENSMUSG00000041710.4, intron 7 of 10) -65679 ENSMUSG00000072934.10 ENSMUSG00000072934 ENSMUST00000178233 Trpc5os protein_coding Interval_92427 chr2 59662564 59662819 + 0 NA intron (ENSMUSG00000035168.16, intron 1 of 25) protein_coding-intron (ENSMUSG00000035168.16, intron 2 of 26) -98007 ENSMUSG00000081157.1 ENSMUSG00000081157 ENSMUST00000118837 Gm13552 processed_pseudogene Interval_114382 chr4 74451636 74452250 + 0 NA Intergenic Intergenic -183271 ENSMUSG00000099334.1 ENSMUSG00000099334 ENSMUST00000178125 Gm26379 snoRNA Interval_138692 chr6 91210002 91210285 + 0 NA promoter-TSS (ENSMUSG00000107397.1) TEC-promoter-TSS (ENSMUSG00000107397.1) -99 ENSMUSG00000107397.1 ENSMUSG00000107397 ENSMUST00000203115 4930402H05Rik TEC Interval_93594 chr2 74711815 74712645 + 0 NA promoter-TSS (ENSMUSG00000052371.5) antisense-promoter-TSS (ENSMUSG00000052371.5) 296 ENSMUSG00000052371.5 ENSMUSG00000052371 ENSMUST00000139005 Hoxd3os1 antisense Interval_157847 chr8 74921252 74922654 + 0 NA Intergenic Intergenic 48413 ENSMUSG00000031621.9 ENSMUSG00000031621 ENSMUST00000174427 Isx protein_coding Interval_80192 chr18 38147973 38149323 + 0 NA Intergenic Intergenic 55192 ENSMUSG00000051375.15 ENSMUSG00000051375 ENSMUST00000193828 Pcdh1 protein_coding Interval_65565 chr16 23370348 23371129 + 0 NA Intergenic Intergenic 52997 ENSMUSG00000084439.1 ENSMUSG00000084439 ENSMUST00000122490 Gm23430 misc_RNA Interval_143266 chr7 4858874 4859170 + 0 NA intron (ENSMUSG00000052605.12, intron 1 of 5) protein_coding-intron (ENSMUSG00000052605.12, intron 1 of 5) 11236 ENSMUSG00000052605.12 ENSMUSG00000052605 ENSMUST00000208173 Isoc2b protein_coding Interval_4982 chr1 83407033 83408599 + 0 NA intron (ENSMUSG00000026163.17, intron 1 of 1) protein_coding-intron (ENSMUSG00000026163.17, intron 1 of 9) 384 ENSMUSG00000026163.17 ENSMUSG00000026163 ENSMUST00000160567 Sphkap protein_coding Interval_165926 chr9 54725278 54725610 + 0 NA intron (ENSMUSG00000061559.15, intron 5 of 10) protein_coding-intron (ENSMUSG00000061559.15, intron 5 of 10) -1087 ENSMUSG00000061559.15 ENSMUSG00000061559 ENSMUST00000127451 Wdr61 protein_coding Interval_62563 chr15 94661386 94661656 + 0 NA intron (ENSMUSG00000063296.5, intron 2 of 2) protein_coding-intron (ENSMUSG00000063296.5, intron 2 of 7) 19865 ENSMUSG00000095169.1 ENSMUSG00000095169 ENSMUST00000103977 Gm25546 snoRNA Interval_121021 chr4 152272986 152275147 + 0 NA promoter-TSS (ENSMUSG00000042804.13) protein_coding-promoter-TSS (ENSMUSG00000042804.13) -8304 ENSMUSG00000042804.13 ENSMUSG00000042804 ENSMUST00000144035 Gpr153 protein_coding Interval_6477 chr1 111410577 111411248 + 0 NA intron (ENSMUSG00000101253.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000101253.1, intron 1 of 1) 24994 ENSMUSG00000101846.1 ENSMUSG00000101846 ENSMUST00000185792 Gm19927 processed_pseudogene Interval_38810 chr12 82508831 82510386 + 0 NA Intergenic Intergenic -13071 ENSMUSG00000094374.2 ENSMUSG00000094374 ENSMUST00000179295 Gm5435 processed_pseudogene Interval_23724 chr11 25363706 25363943 + 0 NA intron (ENSMUSG00000033015.16, intron 5 of 7) lincRNA-intron (ENSMUSG00000033015.16, intron 5 of 7) 62561 ENSMUSG00000086439.1 ENSMUSG00000086439 ENSMUST00000145127 Gm12069 lincRNA Interval_2747 chr1 44118329 44120275 + 0 NA promoter-TSS (ENSMUSG00000026047.13) protein_coding-promoter-TSS (ENSMUSG00000026047.13) -206 ENSMUSG00000041684.11 ENSMUSG00000041684 ENSMUST00000129068 Bivm protein_coding Interval_154093 chr8 12628916 12629804 + 0 NA intron (ENSMUSG00000000759.14, intron 3 of 7) protein_coding-intron (ENSMUSG00000000759.14, intron 17 of 21) -36735 ENSMUSG00000088641.1 ENSMUSG00000088641 ENSMUST00000158016 Gm26483 miRNA Interval_83186 chr18 82636719 82636940 + 0 NA exon (ENSMUSG00000041258.18, exon 13 of 30) protein_coding-exon (ENSMUSG00000041258.18, exon 13 of 30) -14224 ENSMUSG00000118160.1 ENSMUSG00000118160 ENSMUST00000237388 Gm50347 unprocessed_pseudogene Interval_157625 chr8 71881545 71882471 + 0 NA promoter-TSS (ENSMUSG00000056019.12) protein_coding-promoter-TSS (ENSMUSG00000056019.12) -359 ENSMUSG00000056019.12 ENSMUSG00000056019 ENSMUST00000034259 Zfp709 protein_coding Interval_4924 chr1 82654553 82654998 + 0 NA intron (ENSMUSG00000079465.8, intron 9 of 51) protein_coding-intron (ENSMUSG00000079465.8, intron 9 of 51) 19762 ENSMUSG00000065055.1 ENSMUSG00000065055 ENSMUST00000083121 n-R5s213 rRNA Interval_61561 chr15 82335906 82337913 + 0 NA promoter-TSS (ENSMUSG00000022453.8) protein_coding-promoter-TSS (ENSMUSG00000022453.8) -3644 ENSMUSG00000049687.5 ENSMUSG00000049687 ENSMUST00000050349 Pheta2 protein_coding Interval_148795 chr7 87845568 87845937 + 0 NA intron (ENSMUSG00000049583.15, intron 2 of 8) protein_coding-intron (ENSMUSG00000049583.15, intron 2 of 7) -44997 ENSMUSG00000108893.1 ENSMUSG00000108893 ENSMUST00000207573 Gm44927 TEC Interval_78675 chr18 16754076 16754400 + 0 NA intron (ENSMUSG00000024304.14, intron 2 of 15) protein_coding-intron (ENSMUSG00000024304.14, intron 2 of 15) 25505 ENSMUSG00000085575.1 ENSMUSG00000085575 ENSMUST00000149095 Gm15485 antisense Interval_86084 chr19 36449763 36451849 + 0 NA exon (ENSMUSG00000114235.1, exon 1 of 2) protein_coding-intron (ENSMUSG00000024805.16, intron 9 of 9) 351 ENSMUSG00000114235.1 ENSMUSG00000114235 ENSMUST00000224716 F530104D19Rik antisense Interval_86940 chr19 45106487 45107404 + 0 NA intron (ENSMUSG00000117848.1, intron 3 of 4) lincRNA-intron (ENSMUSG00000117848.1, intron 3 of 4) 19894 ENSMUSG00000117848.1 ENSMUSG00000117848 ENSMUST00000237139 Gm35867 lincRNA Interval_85517 chr19 27779640 27780433 + 0 NA intron (ENSMUSG00000040929.17, intron 15 of 16) protein_coding-intron (ENSMUSG00000040929.17, intron 14 of 15) -76029 ENSMUSG00000088266.1 ENSMUSG00000088266 ENSMUST00000157641 Gm24782 snoRNA Interval_66646 chr16 35839607 35840332 + 0 NA intron (ENSMUSG00000034422.14, intron 14 of 16) protein_coding-intron (ENSMUSG00000034422.14, intron 14 of 16) -7708 ENSMUSG00000116549.1 ENSMUSG00000116549 ENSMUST00000231601 Gm49728 processed_pseudogene Interval_166751 chr9 62420501 62421659 + 0 NA exon (ENSMUSG00000041729.15, exon 12 of 12) protein_coding-exon (ENSMUSG00000041729.15, exon 12 of 12) 28068 ENSMUSG00000041729.15 ENSMUSG00000041729 ENSMUST00000123379 Coro2b protein_coding Interval_166673 chr9 61775528 61777356 + 0 NA Intergenic Intergenic 13358 ENSMUSG00000111739.1 ENSMUSG00000111739 ENSMUST00000213572 Gm47241 processed_pseudogene Interval_18629 chr10 88684648 88686405 + 0 NA promoter-TSS (ENSMUSG00000004359.16) protein_coding-promoter-TSS (ENSMUSG00000004359.16) -2503 ENSMUSG00000004359.16 ENSMUSG00000004359 ENSMUST00000144338 Spic protein_coding Interval_69157 chr16 91029183 91030140 + 0 NA TTS (ENSMUSG00000022974.12) protein_coding-TTS (ENSMUSG00000022974.12) -10430 ENSMUSG00000022974.12 ENSMUSG00000022974 ENSMUST00000127002 Paxbp1 protein_coding Interval_171770 chr9 120918843 120919665 + 0 NA Intergenic Intergenic -4002 ENSMUSG00000100146.1 ENSMUSG00000100146 ENSMUST00000188320 1700020M21Rik lincRNA Interval_10415 chr1 170612705 170613906 + 0 NA Intergenic Intergenic -17616 ENSMUSG00000102193.1 ENSMUSG00000102193 ENSMUST00000194441 Gm7299 processed_pseudogene Interval_87634 chr19 53842932 53843487 + 0 NA promoter-TSS (ENSMUSG00000043639.15) protein_coding-promoter-TSS (ENSMUSG00000043639.15) -18081 ENSMUSG00000089679.1 ENSMUSG00000089679 ENSMUST00000162724 Gm16299 antisense Interval_170630 chr9 109731279 109731551 + 0 NA intron (ENSMUSG00000059547.3, intron 5 of 9) protein_coding-intron (ENSMUSG00000059547.3, intron 5 of 9) 14674 ENSMUSG00000059547.3 ENSMUSG00000059547 ENSMUST00000071917 Fbxw26 protein_coding Interval_7917 chr1 134573734 134573953 + 0 NA intron (ENSMUSG00000042207.17, intron 1 of 25) protein_coding-intron (ENSMUSG00000042207.17, intron 1 of 26) -26893 ENSMUSG00000046367.10 ENSMUSG00000046367 ENSMUST00000185836 Mgat4e protein_coding Interval_84949 chr19 19637793 19639325 + 0 NA Intergenic Intergenic 238004 ENSMUSG00000118167.1 ENSMUSG00000118167 ENSMUST00000235148 Gm50216 lincRNA Interval_87483 chr19 52908934 52909756 + 0 NA Intergenic Intergenic -13897 ENSMUSG00000117896.1 ENSMUSG00000117896 ENSMUST00000237126 AA387883 lincRNA Interval_20037 chr10 112387233 112387630 + 0 NA intron (ENSMUSG00000035681.7, intron 2 of 4) protein_coding-intron (ENSMUSG00000035681.7, intron 2 of 4) -68825 ENSMUSG00000035681.7 ENSMUSG00000035681 ENSMUST00000218827 Kcnc2 protein_coding Interval_34073 chr11 120361461 120361688 + 0 NA promoter-TSS (ENSMUSG00000025380.2) protein_coding-promoter-TSS (ENSMUSG00000025380.2) -4968 ENSMUSG00000025380.2 ENSMUSG00000025380 ENSMUST00000130476 Fscn2 protein_coding Interval_21149 chr10 126905259 126906083 + 0 NA Intergenic Intergenic -4321 ENSMUSG00000025436.12 ENSMUSG00000025436 ENSMUST00000220051 Atp23 protein_coding Interval_34689 chr12 8699039 8699652 + 0 NA intron (ENSMUSG00000020594.14, intron 2 of 6) protein_coding-intron (ENSMUSG00000020594.14, intron 2 of 19) 25211 ENSMUSG00000020594.14 ENSMUSG00000020594 ENSMUST00000171608 Pum2 protein_coding Interval_15036 chr10 42130783 42132050 + 0 NA Intergenic Intergenic -76110 ENSMUSG00000085666.3 ENSMUSG00000085666 ENSMUST00000121229 Tdg-ps2 processed_pseudogene Interval_113037 chr4 47128605 47130614 + 0 NA Intergenic Intergenic 28577 ENSMUSG00000094286.1 ENSMUSG00000094286 ENSMUST00000179673 Gm12424 processed_pseudogene Interval_126871 chr5 96307998 96309913 + 0 NA Intergenic Intergenic -65251 ENSMUSG00000034687.8 ENSMUSG00000034687 ENSMUST00000198016 Fras1 protein_coding Interval_20579 chr10 119168699 119169657 + 0 NA Intergenic Intergenic -2793 ENSMUSG00000112161.1 ENSMUSG00000112161 ENSMUST00000217700 Gm34045 lincRNA Interval_95832 chr2 117050115 117050752 + 0 NA Intergenic Intergenic -5133 ENSMUSG00000074930.5 ENSMUSG00000074930 ENSMUST00000122360 Gm13981 processed_pseudogene Interval_28648 chr11 77528003 77528939 + 0 NA TTS (ENSMUSG00000017291.13) protein_coding-TTS (ENSMUSG00000017291.13) -9273 ENSMUSG00000072673.2 ENSMUSG00000072673 ENSMUST00000100807 Gm10392 antisense Interval_69551 chr16 94178626 94179842 + 0 NA TTS (ENSMUSG00000115246.1) antisense-TTS (ENSMUSG00000115246.1) 4693 ENSMUSG00000115246.1 ENSMUSG00000115246 ENSMUST00000228762 Gm48984 antisense Interval_71061 chr17 17583796 17584311 + 0 NA intron (ENSMUSG00000023845.7, intron 1 of 10) protein_coding-intron (ENSMUSG00000023845.7, intron 1 of 17) 10723 ENSMUSG00000116796.1 ENSMUSG00000116796 ENSMUST00000232626 Gm49784 TEC Interval_96908 chr2 129407090 129407300 + 0 NA Intergenic Intergenic -27799 ENSMUSG00000081888.1 ENSMUSG00000081888 ENSMUST00000122326 Spcs2-ps unprocessed_pseudogene Interval_144699 chr7 27599998 27600644 + 0 NA intron (ENSMUSG00000004056.15, intron 1 of 3) protein_coding-intron (ENSMUSG00000004056.15, intron 1 of 7) 8575 ENSMUSG00000004056.15 ENSMUSG00000004056 ENSMUST00000136981 Akt2 protein_coding Interval_6448 chr1 109327614 109328341 + 0 NA Intergenic Intergenic 247152 ENSMUSG00000100884.1 ENSMUSG00000100884 ENSMUST00000185658 Gm28281 processed_pseudogene Interval_77731 chr17 94749370 94750638 + 0 NA promoter-TSS (ENSMUSG00000055660.9) protein_coding-promoter-TSS (ENSMUSG00000055660.9) -112 ENSMUSG00000055660.9 ENSMUSG00000055660 ENSMUST00000234593 Mettl4 protein_coding Interval_71513 chr17 24240221 24241327 + 0 NA TTS (ENSMUSG00000099123.1) miRNA-TTS (ENSMUSG00000099123.1) 173 ENSMUSG00000099123.1 ENSMUSG00000099123 ENSMUST00000184733 Mir6965 miRNA Interval_74149 chr17 46808102 46808667 + 0 NA exon (ENSMUSG00000036568.7, exon 8 of 11) protein_coding-exon (ENSMUSG00000036568.7, exon 8 of 11) 23930 ENSMUSG00000036568.7 ENSMUSG00000036568 ENSMUST00000233455 Bicral protein_coding Interval_25316 chr11 46269081 46269540 + 0 NA intron (ENSMUSG00000020340.16, intron 11 of 30) protein_coding-intron (ENSMUSG00000020340.16, intron 11 of 30) -25116 ENSMUSG00000081078.1 ENSMUSG00000081078 ENSMUST00000117362 Gm12568 processed_pseudogene Interval_131776 chr5 139803310 139804524 + 0 NA exon (ENSMUSG00000036687.13, exon 8 of 8) protein_coding-exon (ENSMUSG00000036687.13, exon 8 of 8) 12383 ENSMUSG00000018143.10 ENSMUSG00000018143 ENSMUST00000110836 Mafk protein_coding Interval_110494 chr3 159654109 159655002 + 0 NA Intergenic Intergenic 55337 ENSMUSG00000028174.12 ENSMUSG00000028174 ENSMUST00000029824 Rpe65 protein_coding Interval_17880 chr10 80560998 80562123 + 0 NA promoter-TSS (ENSMUSG00000047417.18) protein_coding-promoter-TSS (ENSMUSG00000047417.18) -14758 ENSMUSG00000047417.18 ENSMUSG00000047417 ENSMUST00000183139 Rexo1 protein_coding Interval_147866 chr7 74491733 74491989 + 0 NA intron (ENSMUSG00000025790.14, intron 1 of 1) protein_coding-intron (ENSMUSG00000025790.14, intron 2 of 9) 99163 ENSMUSG00000085161.1 ENSMUSG00000085161 ENSMUST00000132826 Gm7580 antisense Interval_85048 chr19 21791393 21793047 + 0 NA intron (ENSMUSG00000024754.13, intron 2 of 4) protein_coding-intron (ENSMUSG00000024754.13, intron 1 of 23) 13832 ENSMUSG00000024754.13 ENSMUSG00000024754 ENSMUST00000238079 Cemip2 protein_coding Interval_11101 chr1 179368544 179370087 + 0 NA intron (ENSMUSG00000055067.15, intron 5 of 11) protein_coding-intron (ENSMUSG00000055067.15, intron 5 of 11) 148690 ENSMUSG00000055067.15 ENSMUSG00000055067 ENSMUST00000194237 Smyd3 protein_coding Interval_31134 chr11 98348228 98349475 + 0 NA exon (ENSMUSG00000061718.12, exon 1 of 7) protein_coding-exon (ENSMUSG00000061718.12, exon 1 of 7) -5745 ENSMUSG00000061718.12 ENSMUSG00000061718 ENSMUST00000152525 Ppp1r1b protein_coding Interval_46670 chr13 68569668 68570054 + 0 NA intron (ENSMUSG00000034617.7, intron 8 of 14) protein_coding-intron (ENSMUSG00000034617.7, intron 8 of 14) 12243 ENSMUSG00000034617.7 ENSMUSG00000034617 ENSMUST00000221800 Mtrr protein_coding Interval_95167 chr2 104493016 104494834 + 0 NA promoter-TSS (ENSMUSG00000027177.14) protein_coding-promoter-TSS (ENSMUSG00000027177.14) -43512 ENSMUSG00000081447.1 ENSMUSG00000081447 ENSMUST00000117214 Gm13870 processed_pseudogene Interval_104622 chr3 68902012 68902241 + 0 NA TTS (ENSMUSG00000093402.1) processed_pseudogene-TTS (ENSMUSG00000093402.1) 296 ENSMUSG00000093730.1 ENSMUSG00000093730 ENSMUST00000177341 Gm20690 processed_pseudogene Interval_86332 chr19 38813395 38814274 + 0 NA intron (ENSMUSG00000024999.7, intron 5 of 20) protein_coding-intron (ENSMUSG00000024999.7, intron 5 of 20) 5403 ENSMUSG00000024999.7 ENSMUSG00000024999 ENSMUST00000025963 Noc3l protein_coding Interval_155686 chr8 36151907 36152109 + 0 NA Intergenic Intergenic -7471 ENSMUSG00000109704.1 ENSMUSG00000109704 ENSMUST00000211253 Gm38414 lincRNA Interval_80680 chr18 46275409 46275825 + 0 NA exon (ENSMUSG00000024477.4, exon 1 of 1) protein_coding-intron (ENSMUSG00000024477.4, intron 1 of 2) 5210 ENSMUSG00000024477.4 ENSMUSG00000024477 ENSMUST00000236205 Pggt1b protein_coding Interval_73381 chr17 36891871 36893114 + 0 NA Intergenic Intergenic -2369 ENSMUSG00000073399.9 ENSMUSG00000073399 ENSMUST00000172640 Trim40 protein_coding Interval_31646 chr11 101963337 101964785 + 0 NA exon (ENSMUSG00000001494.6, exon 2 of 2) protein_coding-exon (ENSMUSG00000001494.6, exon 2 of 2) 2954 ENSMUSG00000001494.6 ENSMUSG00000001494 ENSMUST00000001534 Sost protein_coding Interval_124813 chr5 54973846 54974999 + 0 NA Intergenic Intergenic -22198 ENSMUSG00000106113.1 ENSMUSG00000106113 ENSMUST00000196691 Gm43779 processed_pseudogene Interval_150828 chr7 115291016 115291311 + 0 NA Intergenic Intergenic 118890 ENSMUSG00000099211.1 ENSMUSG00000099211 ENSMUST00000183778 Gm27684 miRNA Interval_155053 chr8 25976157 25977194 + 0 NA promoter-TSS (ENSMUSG00000037260.8) protein_coding-promoter-TSS (ENSMUSG00000037260.8) -2622 ENSMUSG00000037260.8 ENSMUSG00000037260 ENSMUST00000209420 Hgsnat protein_coding Interval_66506 chr16 34534109 34534705 + 0 NA intron (ENSMUSG00000061751.16, intron 1 of 36) protein_coding-intron (ENSMUSG00000061751.16, intron 1 of 36) -131910 ENSMUSG00000022832.11 ENSMUSG00000022832 ENSMUST00000231612 Ropn1 protein_coding Interval_108746 chr3 130996881 130997583 + 0 NA Intergenic Intergenic 29138 ENSMUSG00000104859.1 ENSMUSG00000104859 ENSMUST00000197848 A430072C10Rik TEC Interval_2587 chr1 40887459 40888233 + 0 NA Intergenic Intergenic -23614 ENSMUSG00000094136.2 ENSMUSG00000094136 ENSMUST00000178542 Gm5973 processed_pseudogene Interval_89878 chr2 26170653 26171709 + 0 NA Intergenic Intergenic 20497 ENSMUSG00000085545.1 ENSMUSG00000085545 ENSMUST00000133025 Gm13553 lincRNA Interval_154843 chr8 24283724 24284904 + 0 NA Intergenic Intergenic 63804 ENSMUSG00000109419.1 ENSMUSG00000109419 ENSMUST00000207606 Gm45163 lincRNA Interval_86667 chr19 42420754 42421784 + 0 NA intron (ENSMUSG00000042401.8, intron 1 of 14) protein_coding-intron (ENSMUSG00000042401.8, intron 1 of 14) 10516 ENSMUSG00000042401.8 ENSMUSG00000042401 ENSMUST00000238182 Crtac1 protein_coding Interval_167514 chr9 70186399 70187551 + 0 NA Intergenic Intergenic -20375 ENSMUSG00000032220.10 ENSMUSG00000032220 ENSMUST00000034745 Myo1e protein_coding Interval_92344 chr2 59160073 59162089 + 0 NA promoter-TSS (ENSMUSG00000026991.20) protein_coding-promoter-TSS (ENSMUSG00000026991.20) -418 ENSMUSG00000036641.9 ENSMUSG00000036641 ENSMUST00000131959 Ccdc148 protein_coding Interval_121549 chr5 3363538 3363883 + 0 NA intron (ENSMUSG00000040274.11, intron 1 of 1) protein_coding-intron (ENSMUSG00000040274.11, intron 1 of 6) 93391 ENSMUSG00000106658.1 ENSMUSG00000106658 ENSMUST00000197473 Gm36548 lincRNA Interval_9827 chr1 162725300 162725611 + 0 NA promoter-TSS (ENSMUSG00000040225.15) protein_coding-promoter-TSS (ENSMUSG00000040225.15) 5266 ENSMUSG00000040225.15 ENSMUSG00000040225 ENSMUST00000183286 Prrc2c protein_coding Interval_148118 chr7 79342948 79343599 + 0 NA exon (ENSMUSG00000039202.12, exon 6 of 6) protein_coding-exon (ENSMUSG00000039202.12, exon 6 of 6) 9472 ENSMUSG00000089453.1 ENSMUSG00000089453 ENSMUST00000158828 Gm24224 misc_RNA Interval_53747 chr14 61427160 61427853 + 0 NA intron (ENSMUSG00000021929.9, intron 1 of 16) protein_coding-intron (ENSMUSG00000021929.9, intron 1 of 16) -31761 ENSMUSG00000115618.1 ENSMUSG00000115618 ENSMUST00000228542 Gm49298 processed_pseudogene Interval_119478 chr4 137838297 137838516 + 0 NA Intergenic Intergenic 45531 ENSMUSG00000085823.7 ENSMUSG00000085823 ENSMUST00000156022 Gm13012 antisense Interval_55559 chr14 92196020 92196251 + 0 NA Intergenic Intergenic -37370 ENSMUSG00000115308.1 ENSMUSG00000115308 ENSMUST00000228682 Gm48944 processed_pseudogene Interval_11401 chr1 181647398 181647845 + 0 NA intron (ENSMUSG00000047369.17, intron 26 of 84) protein_coding-intron (ENSMUSG00000047369.17, intron 26 of 83) 42621 ENSMUSG00000103100.1 ENSMUSG00000103100 ENSMUST00000194607 Gm37664 TEC Interval_97050 chr2 130794991 130795234 + 0 NA intron (ENSMUSG00000027309.18, intron 8 of 20) protein_coding-intron (ENSMUSG00000027309.18, intron 8 of 36) 8870 ENSMUSG00000089662.1 ENSMUSG00000089662 ENSMUST00000120631 Gm14057 transcribed_processed_pseudogene Interval_65803 chr16 28942834 28943916 + 0 NA Intergenic Intergenic 7980 ENSMUSG00000116861.1 ENSMUSG00000116861 ENSMUST00000232466 Gm8253 processed_pseudogene Interval_66129 chr16 31833829 31834218 + 0 NA intron (ENSMUSG00000022770.17, intron 1 of 1) protein_coding-intron (ENSMUSG00000022770.17, intron 14 of 24) -21412 ENSMUSG00000116778.1 ENSMUSG00000116778 ENSMUST00000231752 Gm49713 processed_pseudogene Interval_13175 chr10 12851794 12852533 + 0 NA intron (ENSMUSG00000019820.11, intron 2 of 17) protein_coding-intron (ENSMUSG00000019820.11, intron 1 of 73) 6075 ENSMUSG00000112698.1 ENSMUSG00000112698 ENSMUST00000219425 Gm7525 processed_pseudogene Interval_109776 chr3 146872284 146873107 + 0 NA intron (ENSMUSG00000036745.15, intron 1 of 20) protein_coding-intron (ENSMUSG00000036745.15, intron 1 of 21) -33348 ENSMUSG00000070343.3 ENSMUSG00000070343 ENSMUST00000084614 Gm10288 processed_pseudogene Interval_76479 chr17 80479431 80480765 + 0 NA promoter-TSS (ENSMUSG00000024241.7) protein_coding-promoter-TSS (ENSMUSG00000024241.7) 355 ENSMUSG00000024241.7 ENSMUSG00000024241 ENSMUST00000234841 Sos1 protein_coding Interval_67048 chr16 42164480 42165864 + 0 NA intron (ENSMUSG00000061080.11, intron 3 of 4) protein_coding-intron (ENSMUSG00000061080.11, intron 6 of 6) 19745 ENSMUSG00000116841.1 ENSMUSG00000116841 ENSMUST00000232237 Gm49737 processed_pseudogene Interval_7950 chr1 134743504 134744137 + 0 NA intron (ENSMUSG00000026452.15, intron 5 of 9) protein_coding-intron (ENSMUSG00000026452.15, intron 4 of 8) 58165 ENSMUSG00000103614.1 ENSMUSG00000103614 ENSMUST00000192808 Gm37949 TEC Interval_149952 chr7 103524011 103524187 + 0 NA Intergenic Intergenic -3253 ENSMUSG00000096584.2 ENSMUSG00000096584 ENSMUST00000078108 Olfr611 protein_coding Interval_76123 chr17 75178252 75178825 + 0 NA promoter-TSS (ENSMUSG00000001870.16) protein_coding-promoter-TSS (ENSMUSG00000001870.16) 13331 ENSMUSG00000084025.1 ENSMUSG00000084025 ENSMUST00000120159 Gm6276 processed_pseudogene Interval_129448 chr5 120234869 120235457 + 0 NA Intergenic Intergenic -20095 ENSMUSG00000106915.1 ENSMUSG00000106915 ENSMUST00000202782 Gm42655 TEC Interval_141502 chr6 128669575 128670233 + 0 NA intron (ENSMUSG00000030364.6, intron 2 of 5) protein_coding-intron (ENSMUSG00000030364.6, intron 1 of 4) 7518 ENSMUSG00000030364.6 ENSMUSG00000030364 ENSMUST00000204728 Clec2h protein_coding Interval_109331 chr3 139033086 139033384 + 0 NA intron (ENSMUSG00000028149.12, intron 2 of 12) protein_coding-intron (ENSMUSG00000028149.12, intron 2 of 13) 41913 ENSMUSG00000028149.12 ENSMUSG00000028149 ENSMUST00000195953 Rap1gds1 protein_coding Interval_159617 chr8 95811761 95811975 + 0 NA intron (ENSMUSG00000074136.9, intron 2 of 2) antisense-intron (ENSMUSG00000074136.9, intron 2 of 2) -4437 ENSMUSG00000036550.16 ENSMUSG00000036550 ENSMUST00000212323 Cnot1 protein_coding Interval_30383 chr11 94035919 94036660 + 0 NA TTS (ENSMUSG00000081604.5) processed_pseudogene-TTS (ENSMUSG00000081604.5) 1339 ENSMUSG00000081604.5 ENSMUSG00000081604 ENSMUST00000118048 Gm11518 processed_pseudogene Interval_22632 chr11 12395939 12396559 + 0 NA intron (ENSMUSG00000020173.17, intron 1 of 11) protein_coding-intron (ENSMUSG00000020173.17, intron 1 of 14) 15895 ENSMUSG00000020173.17 ENSMUSG00000020173 ENSMUST00000146067 Cobl protein_coding Interval_146790 chr7 51499334 51499590 + 0 NA Intergenic Intergenic -11645 ENSMUSG00000055489.8 ENSMUSG00000055489 ENSMUST00000207717 Ano5 protein_coding Interval_172117 chrX 7727926 7729812 + 0 NA TTS (ENSMUSG00000039382.12) protein_coding-TTS (ENSMUSG00000039382.12) 430 ENSMUSG00000031149.7 ENSMUSG00000031149 ENSMUST00000033489 Praf2 protein_coding Interval_83977 chr19 5904007 5904256 + 0 NA promoter-TSS (ENSMUSG00000024826.15) protein_coding-promoter-TSS (ENSMUSG00000024826.15) 2941 ENSMUSG00000024826.15 ENSMUSG00000024826 ENSMUST00000155937 Dpf2 protein_coding Interval_147720 chr7 72917172 72918515 + 0 NA Intergenic Intergenic 72310 ENSMUSG00000098035.1 ENSMUSG00000098035 ENSMUST00000182995 Gm5335 processed_pseudogene Interval_131377 chr5 136797248 136797482 + 0 NA intron (ENSMUSG00000004415.15, intron 3 of 3) protein_coding-intron (ENSMUSG00000004415.15, intron 3 of 12) 40944 ENSMUSG00000004415.15 ENSMUSG00000004415 ENSMUST00000140245 Col26a1 protein_coding Interval_151927 chr7 127582508 127583141 + 0 NA TTS (ENSMUSG00000030815.11) protein_coding-TTS (ENSMUSG00000030815.11) 2898 ENSMUSG00000057176.4 ENSMUSG00000057176 ENSMUST00000206220 Ccdc189 protein_coding Interval_31869 chr11 103468556 103469034 + 0 NA intron (ENSMUSG00000078632.4, intron 5 of 13) protein_coding-intron (ENSMUSG00000078632.4, intron 5 of 13) 35802 ENSMUSG00000078632.4 ENSMUSG00000078632 ENSMUST00000153273 Lrrc37a protein_coding Interval_46712 chr13 69554817 69556241 + 0 NA intron (ENSMUSG00000021595.18, intron 1 of 3) protein_coding-intron (ENSMUSG00000021595.18, intron 1 of 3) -11506 ENSMUSG00000051805.1 ENSMUSG00000051805 ENSMUST00000070942 A530095I07Rik antisense Interval_164031 chr9 31044613 31045156 + 0 NA intron (ENSMUSG00000047412.16, intron 1 of 5) protein_coding-intron (ENSMUSG00000047412.16, intron 1 of 5) -8355 ENSMUSG00000047412.16 ENSMUSG00000047412 ENSMUST00000213202 Zbtb44 protein_coding Interval_61414 chr15 81465857 81466981 + 0 NA promoter-TSS (ENSMUSG00000022400.9) protein_coding-promoter-TSS (ENSMUSG00000022400.9) -376 ENSMUSG00000022400.9 ENSMUSG00000022400 ENSMUST00000229991 Rbx1 protein_coding Interval_93116 chr2 70348915 70349294 + 0 NA intron (ENSMUSG00000042064.13, intron 30 of 33) protein_coding-intron (ENSMUSG00000042064.13, intron 31 of 34) -109878 ENSMUSG00000047965.9 ENSMUSG00000047965 ENSMUST00000140507 Rpl9-ps7 processed_pseudogene Interval_71485 chr17 24086168 24086577 + 0 NA promoter-TSS (ENSMUSG00000117523.1) antisense-promoter-TSS (ENSMUSG00000117523.1) -492 ENSMUSG00000117523.1 ENSMUSG00000117523 ENSMUST00000234317 Gm50071 antisense Interval_30785 chr11 96441552 96442024 + 0 NA Intergenic Intergenic 22759 ENSMUSG00000075586.4 ENSMUSG00000075586 ENSMUST00000153012 Gm11529 processed_transcript Interval_48301 chr13 97953421 97954192 + 0 NA exon (ENSMUSG00000021662.11, exon 25 of 36) protein_coding-exon (ENSMUSG00000021662.11, exon 25 of 36) 62611 ENSMUSG00000021662.11 ENSMUSG00000021662 ENSMUST00000224866 Arhgef28 protein_coding Interval_30939 chr11 97309481 97312007 + 0 NA Intergenic Intergenic -5164 ENSMUSG00000018882.12 ENSMUSG00000018882 ENSMUST00000132168 Mrpl45 protein_coding Interval_149210 chr7 96290214 96290882 + 0 NA intron (ENSMUSG00000048078.16, intron 1 of 32) protein_coding-intron (ENSMUSG00000048078.16, intron 1 of 32) -15119 ENSMUSG00000099030.1 ENSMUSG00000099030 ENSMUST00000184738 Mir6394 miRNA Interval_27083 chr11 62756636 62758222 + 0 NA exon (ENSMUSG00000047342.17, exon 2 of 2) protein_coding-exon (ENSMUSG00000047342.17, exon 2 of 2) -3807 ENSMUSG00000086674.1 ENSMUSG00000086674 ENSMUST00000128292 Zfp286os antisense Interval_87533 chr19 53283681 53285484 + 0 NA Intergenic Intergenic 17951 ENSMUSG00000118350.1 ENSMUSG00000118350 ENSMUST00000237548 Gm36339 processed_pseudogene Interval_44893 chr13 49420636 49421923 + 0 NA promoter-TSS (ENSMUSG00000021385.10) protein_coding-promoter-TSS (ENSMUSG00000021385.10) 1 ENSMUSG00000021385.10 ENSMUSG00000021385 ENSMUST00000021817 Ippk protein_coding Interval_70684 chr17 13006500 13008410 + 0 NA promoter-TSS (ENSMUSG00000006818.5) protein_coding-promoter-TSS (ENSMUSG00000006818.5) -13286 ENSMUSG00000060475.13 ENSMUSG00000060475 ENSMUST00000233467 Wtap protein_coding Interval_2342 chr1 38200509 38200833 + 0 NA intron (ENSMUSG00000037138.18, intron 16 of 22) protein_coding-intron (ENSMUSG00000037138.18, intron 16 of 22) -39029 ENSMUSG00000085391.1 ENSMUSG00000085391 ENSMUST00000133299 Gm16150 antisense Interval_19788 chr10 108822502 108822721 + 0 NA intron (ENSMUSG00000035864.14, intron 3 of 7) protein_coding-intron (ENSMUSG00000035864.14, intron 3 of 10) 44300 ENSMUSG00000111910.1 ENSMUSG00000111910 ENSMUST00000219164 Gm47472 TEC Interval_146375 chr7 45576908 45578405 + 0 NA intron (ENSMUSG00000030826.19, intron 4 of 11) protein_coding-intron (ENSMUSG00000030826.19, intron 3 of 10) -2518 ENSMUSG00000109644.1 ENSMUSG00000109644 ENSMUST00000210965 0610005C13Rik antisense Interval_149821 chr7 101820806 101823964 + 0 NA TTS (ENSMUSG00000032737.13) protein_coding-TTS (ENSMUSG00000032737.13) 1639 ENSMUSG00000007946.11 ENSMUSG00000007946 ENSMUST00000209878 Phox2a protein_coding Interval_129504 chr5 120612310 120613722 + 0 NA promoter-TSS (ENSMUSG00000029600.10) protein_coding-promoter-TSS (ENSMUSG00000029600.10) -111 ENSMUSG00000029599.13 ENSMUSG00000029599 ENSMUST00000201698 Ddx54 protein_coding Interval_67816 chr16 57416988 57417440 + 0 NA intron (ENSMUSG00000043336.14, intron 1 of 4) protein_coding-intron (ENSMUSG00000043336.14, intron 1 of 4) 64121 ENSMUSG00000043336.14 ENSMUSG00000043336 ENSMUST00000159414 Filip1l protein_coding Interval_123547 chr5 33401014 33401395 + 0 NA intron (ENSMUSG00000037355.14, intron 7 of 13) protein_coding-intron (ENSMUSG00000037355.14, intron 7 of 13) 22432 ENSMUSG00000037355.14 ENSMUSG00000037355 ENSMUST00000202816 Uvssa protein_coding Interval_28295 chr11 74965885 74966646 + 0 NA intron (ENSMUSG00000038290.15, intron 7 of 16) protein_coding-intron (ENSMUSG00000038290.15, intron 8 of 18) 27229 ENSMUSG00000101295.1 ENSMUSG00000101295 ENSMUST00000189608 Gm28180 antisense Interval_85631 chr19 29193637 29194880 + 0 NA Intergenic Intergenic 34140 ENSMUSG00000068466.6 ENSMUSG00000068466 ENSMUST00000084171 Gm5518 processed_pseudogene Interval_23015 chr11 18937892 18938234 + 0 NA intron (ENSMUSG00000020160.18, intron 6 of 9) protein_coding-intron (ENSMUSG00000020160.18, intron 8 of 12) -48223 ENSMUSG00000104244.1 ENSMUSG00000104244 ENSMUST00000195805 2900018N21Rik TEC Interval_118446 chr4 131662548 131662824 + 0 NA intron (ENSMUSG00000087171.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000087171.1, intron 2 of 2) 9455 ENSMUSG00000087171.1 ENSMUSG00000087171 ENSMUST00000138697 Gm12962 lincRNA Interval_86211 chr19 37830128 37830796 + 0 NA Intergenic Intergenic -39808 ENSMUSG00000118115.1 ENSMUSG00000118115 ENSMUST00000237198 Gm4757 processed_pseudogene Interval_63603 chr15 102287551 102288359 + 0 NA Intergenic Intergenic 8196 ENSMUSG00000116091.1 ENSMUSG00000116091 ENSMUST00000229580 Gm49479 bidirectional_promoter_lncRNA Interval_105913 chr3 90051606 90053376 + 0 NA promoter-TSS (ENSMUSG00000027942.17) protein_coding-promoter-TSS (ENSMUSG00000027942.17) -363 ENSMUSG00000027942.17 ENSMUSG00000027942 ENSMUST00000162390 4933434E20Rik protein_coding Interval_126348 chr5 86857489 86858778 + 0 NA Intergenic Intergenic 5373 ENSMUSG00000105309.1 ENSMUSG00000105309 ENSMUST00000200382 Gm21461 unprocessed_pseudogene Interval_172034 chr9 123717225 123718229 + 0 NA promoter-TSS (ENSMUSG00000025245.14) protein_coding-promoter-TSS (ENSMUSG00000025245.14) -5375 ENSMUSG00000025245.14 ENSMUSG00000025245 ENSMUST00000165799 Lztfl1 protein_coding Interval_20321 chr10 116876289 116876518 + 0 NA intron (ENSMUSG00000034057.8, intron 1 of 24) protein_coding-intron (ENSMUSG00000034057.8, intron 1 of 24) 20516 ENSMUSG00000034057.8 ENSMUSG00000034057 ENSMUST00000048229 Myrfl protein_coding Interval_140879 chr6 122551200 122551672 + 0 NA Intergenic Intergenic -9049 ENSMUSG00000040627.14 ENSMUSG00000040627 ENSMUST00000160685 Aicda protein_coding Interval_73000 chr17 34077362 34078231 + 0 NA Intergenic Intergenic -1629 ENSMUSG00000092383.2 ENSMUSG00000092383 ENSMUST00000172731 H2-Pb unprocessed_pseudogene Interval_124349 chr5 44304354 44304921 + 0 NA Intergenic Intergenic -51068 ENSMUSG00000104541.1 ENSMUSG00000104541 ENSMUST00000198298 Gm43114 TEC Interval_104230 chr3 61331786 61331956 + 0 NA Intergenic Intergenic -2678 ENSMUSG00000102667.1 ENSMUSG00000102667 ENSMUST00000192191 Gm19901 processed_pseudogene Interval_71950 chr17 27172996 27173474 + 0 NA Intergenic Intergenic -5440 ENSMUSG00000024210.3 ENSMUSG00000024210 ENSMUST00000025046 Ip6k3 protein_coding Interval_58836 chr15 38456781 38458712 + 0 NA Intergenic Intergenic -2612 ENSMUSG00000115009.1 ENSMUSG00000115009 ENSMUST00000228650 G930009F23Rik lincRNA Interval_115664 chr4 101837279 101838085 + 0 NA intron (ENSMUSG00000035201.15, intron 2 of 3) protein_coding-intron (ENSMUSG00000035201.15, intron 1 of 2) 6341 ENSMUSG00000035201.15 ENSMUSG00000035201 ENSMUST00000084386 B020004J07Rik protein_coding Interval_13306 chr10 14449869 14450610 + 0 NA intron (ENSMUSG00000039116.7, intron 6 of 23) protein_coding-intron (ENSMUSG00000039116.7, intron 6 of 24) -72839 ENSMUSG00000071532.6 ENSMUSG00000071532 ENSMUST00000096020 Gm10335 processed_pseudogene Interval_83960 chr19 5817676 5818532 + 0 NA Intergenic Intergenic 6603 ENSMUSG00000098865.1 ENSMUSG00000098865 ENSMUST00000184512 Gm27702 sRNA Interval_117343 chr4 123115882 123117709 + 0 NA promoter-TSS (ENSMUSG00000102997.1) TEC-promoter-TSS (ENSMUSG00000102997.1) -109 ENSMUSG00000102997.1 ENSMUSG00000102997 ENSMUST00000194481 Gm17244 TEC Interval_67205 chr16 44404044 44404448 + 0 NA intron (ENSMUSG00000071550.14, intron 3 of 3) protein_coding-intron (ENSMUSG00000071550.14, intron 3 of 34) 9450 ENSMUSG00000071550.14 ENSMUSG00000071550 ENSMUST00000127303 Cfap44 protein_coding Interval_25101 chr11 43951647 43952783 + 0 NA Intergenic Intergenic -6874 ENSMUSG00000087172.1 ENSMUSG00000087172 ENSMUST00000148504 Gm12153 lincRNA Interval_110101 chr3 153296390 153297239 + 0 NA exon (ENSMUSG00000105023.1, exon 2 of 2) sense_intronic-exon (ENSMUSG00000105023.1, exon 2 of 2) 1835 ENSMUSG00000105023.1 ENSMUSG00000105023 ENSMUST00000197231 1700012D16Rik sense_intronic Interval_162579 chr9 4990588 4990858 + 0 NA Intergenic Intergenic 12764 ENSMUSG00000110644.1 ENSMUSG00000110644 ENSMUST00000212452 Gm7390 processed_pseudogene Interval_78104 chr18 8146467 8146834 + 0 NA Intergenic Intergenic -33929 ENSMUSG00000117490.1 ENSMUSG00000117490 ENSMUST00000234300 Gm35031 lincRNA Interval_77137 chr17 86799163 86799510 + 0 NA intron (ENSMUSG00000024140.10, intron 2 of 15) protein_coding-intron (ENSMUSG00000024140.10, intron 2 of 15) -24997 ENSMUSG00000024140.10 ENSMUSG00000024140 ENSMUST00000234447 Epas1 protein_coding Interval_161147 chr8 117789588 117789886 + 0 NA Intergenic Intergenic 3480 ENSMUSG00000031843.2 ENSMUSG00000031843 ENSMUST00000211818 Mphosph6 protein_coding Interval_133306 chr5 151391832 151392096 + 0 NA intron (ENSMUSG00000097321.5, intron 3 of 3) processed_transcript-intron (ENSMUSG00000097321.5, intron 3 of 3) -8180 ENSMUSG00000097321.5 ENSMUSG00000097321 ENSMUST00000201853 1700028E10Rik processed_transcript Interval_136270 chr6 52440206 52440637 + 0 NA Intergenic Intergenic -52030 ENSMUSG00000107895.1 ENSMUSG00000107895 ENSMUST00000203771 1700094M24Rik lincRNA Interval_11582 chr1 182963300 182964734 + 0 NA intron (ENSMUSG00000079164.8, intron 2 of 3) protein_coding-intron (ENSMUSG00000079164.8, intron 1 of 3) 9189 ENSMUSG00000079164.8 ENSMUSG00000079164 ENSMUST00000191820 Tlr5 protein_coding Interval_114671 chr4 83643552 83645017 + 0 NA intron (ENSMUSG00000052407.17, intron 11 of 25) protein_coding-intron (ENSMUSG00000052407.17, intron 11 of 25) 46981 ENSMUSG00000098217.1 ENSMUSG00000098217 ENSMUST00000182160 Gm27046 processed_pseudogene Interval_108826 chr3 132062391 132063294 + 0 NA Intergenic Intergenic 19550 ENSMUSG00000064992.1 ENSMUSG00000064992 ENSMUST00000083058 Gm22421 snRNA Interval_80679 chr18 46264635 46265032 + 0 NA intron (ENSMUSG00000024477.4, intron 1 of 7) protein_coding-intron (ENSMUSG00000024477.4, intron 1 of 7) 15994 ENSMUSG00000024477.4 ENSMUSG00000024477 ENSMUST00000236205 Pggt1b protein_coding Interval_166619 chr9 61336307 61337526 + 0 NA Intergenic Intergenic 34711 ENSMUSG00000074256.3 ENSMUSG00000074256 ENSMUST00000187131 Gm10655 lincRNA Interval_113653 chr4 57275216 57276081 + 0 NA intron (ENSMUSG00000038764.14, intron 1 of 25) protein_coding-intron (ENSMUSG00000038764.14, intron 1 of 25) -24448 ENSMUSG00000085654.1 ENSMUSG00000085654 ENSMUST00000129102 Gm12536 lincRNA Interval_2211 chr1 37063311 37064228 + 0 NA TTS (ENSMUSG00000050122.19) protein_coding-TTS (ENSMUSG00000050122.19) 34436 ENSMUSG00000050122.19 ENSMUSG00000050122 ENSMUST00000194320 Vwa3b protein_coding Interval_58895 chr15 39810680 39810989 + 0 NA exon (ENSMUSG00000087695.1, exon 3 of 3) antisense-exon (ENSMUSG00000087695.1, exon 3 of 3) 13789 ENSMUSG00000087695.1 ENSMUSG00000087695 ENSMUST00000147378 Gm16291 antisense Interval_5640 chr1 90488982 90489608 + 0 NA Intergenic Intergenic -31201 ENSMUSG00000103292.1 ENSMUSG00000103292 ENSMUST00000192105 Gm35048 TEC Interval_14813 chr10 40212314 40213362 + 0 NA Intergenic Intergenic 9969 ENSMUSG00000102632.1 ENSMUSG00000102632 ENSMUST00000191714 Gm37786 TEC Interval_81557 chr18 61677018 61677676 + 0 NA Intergenic Intergenic -7540 ENSMUSG00000024578.3 ENSMUSG00000024578 ENSMUST00000025471 Il17b protein_coding Interval_23100 chr11 19947822 19948088 + 0 NA intron (ENSMUSG00000045671.17, intron 1 of 6) protein_coding-intron (ENSMUSG00000045671.17, intron 1 of 5) -6615 ENSMUSG00000045671.17 ENSMUSG00000045671 ENSMUST00000123036 Spred2 protein_coding Interval_22638 chr11 12430780 12430982 + 0 NA intron (ENSMUSG00000020173.17, intron 1 of 11) protein_coding-intron (ENSMUSG00000020173.17, intron 1 of 14) -18737 ENSMUSG00000020173.17 ENSMUSG00000020173 ENSMUST00000146067 Cobl protein_coding Interval_45096 chr13 52108807 52109247 + 0 NA intron (ENSMUSG00000113211.1, intron 3 of 7) processed_transcript-intron (ENSMUSG00000113211.1, intron 3 of 7) 10485 ENSMUSG00000113211.1 ENSMUSG00000113211 ENSMUST00000222527 4921525O09Rik processed_transcript Interval_79316 chr18 30423715 30424594 + 0 NA Intergenic Intergenic -4094 ENSMUSG00000117345.1 ENSMUSG00000117345 ENSMUST00000234753 Gm7926 processed_pseudogene Interval_147346 chr7 66013327 66013654 + 0 NA intron (ENSMUSG00000030513.14, intron 11 of 19) protein_coding-intron (ENSMUSG00000030513.14, intron 13 of 21) -30112 ENSMUSG00000108793.1 ENSMUSG00000108793 ENSMUST00000206065 Gm45213 protein_coding Interval_137700 chr6 80388108 80388380 + 0 NA intron (ENSMUSG00000052581.13, intron 2 of 2) protein_coding-intron (ENSMUSG00000052581.13, intron 3 of 3) -57106 ENSMUSG00000108088.1 ENSMUSG00000108088 ENSMUST00000203211 Gm44229 TEC Interval_149857 chr7 102035113 102035426 + 0 NA TTS (ENSMUSG00000070426.12) protein_coding-TTS (ENSMUSG00000070426.12) -17110 ENSMUSG00000070427.4 ENSMUSG00000070427 ENSMUST00000211502 Il18bp protein_coding Interval_13372 chr10 17396138 17396394 + 0 NA Intergenic Intergenic -63389 ENSMUSG00000111922.1 ENSMUSG00000111922 ENSMUST00000220296 Gm47760 lincRNA Interval_168844 chr9 87972702 87974153 + 0 NA Intergenic Intergenic 48122 ENSMUSG00000077553.1 ENSMUSG00000077553 ENSMUST00000104365 Gm23176 snoRNA Interval_156557 chr8 51345923 51347592 + 0 NA Intergenic Intergenic 70867 ENSMUSG00000109691.1 ENSMUSG00000109691 ENSMUST00000210651 Gm8679 processed_pseudogene Interval_135467 chr6 39465349 39465571 + 0 NA intron (ENSMUSG00000038456.9, intron 8 of 10) protein_coding-intron (ENSMUSG00000038456.9, intron 16 of 18) 20996 ENSMUSG00000038456.9 ENSMUSG00000038456 ENSMUST00000154149 Dennd2a protein_coding Interval_47673 chr13 91070949 91071755 + 0 NA intron (ENSMUSG00000021619.6, intron 3 of 7) protein_coding-intron (ENSMUSG00000021619.6, intron 3 of 7) 148135 ENSMUSG00000049517.8 ENSMUSG00000049517 ENSMUST00000224430 Rps23 protein_coding Interval_46682 chr13 68899379 68899915 + 0 NA intron (ENSMUSG00000021536.7, intron 2 of 24) protein_coding-intron (ENSMUSG00000021536.7, intron 2 of 24) 43114 ENSMUSG00000113859.1 ENSMUSG00000113859 ENSMUST00000223009 Gm7979 processed_pseudogene Interval_132546 chr5 146206554 146206750 + 0 NA Intergenic Intergenic -1863 ENSMUSG00000105636.1 ENSMUSG00000105636 ENSMUST00000199177 Gm43625 lincRNA Interval_59717 chr15 58872140 58873311 + 0 NA promoter-TSS (ENSMUSG00000037085.8) protein_coding-promoter-TSS (ENSMUSG00000037085.8) 51 ENSMUSG00000037085.8 ENSMUSG00000037085 ENSMUST00000036937 Trmt12 protein_coding Interval_30661 chr11 95750260 95751232 + 0 NA intron (ENSMUSG00000075595.9, intron 2 of 6) protein_coding-intron (ENSMUSG00000075595.9, intron 1 of 4) 1746 ENSMUSG00000075595.9 ENSMUSG00000075595 ENSMUST00000091565 Zfp652 protein_coding Interval_108450 chr3 127326536 127326778 + 0 NA intron (ENSMUSG00000032826.19, intron 2 of 15) protein_coding-intron (ENSMUSG00000032826.19, intron 2 of 14) -26984 ENSMUSG00000106446.1 ENSMUSG00000106446 ENSMUST00000196407 Gm42970 TEC Interval_109801 chr3 147305979 147306453 + 0 NA Intergenic Intergenic -83496 ENSMUSG00000106023.1 ENSMUSG00000106023 ENSMUST00000196485 Gm36831 lincRNA Interval_72976 chr17 33911926 33912165 + 0 NA promoter-TSS (ENSMUSG00000002307.16) protein_coding-promoter-TSS (ENSMUSG00000002307.16) 2547 ENSMUSG00000002307.16 ENSMUSG00000002307 ENSMUST00000173279 Daxx protein_coding Interval_48148 chr13 96673752 96674307 + 0 NA Intergenic Intergenic 4094 ENSMUSG00000113351.1 ENSMUSG00000113351 ENSMUST00000221591 Gm48575 processed_pseudogene Interval_29248 chr11 82226017 82226713 + 0 NA intron (ENSMUSG00000020702.13, intron 7 of 10) protein_coding-intron (ENSMUSG00000020702.13, intron 7 of 10) 79325 ENSMUSG00000020702.13 ENSMUSG00000020702 ENSMUST00000021043 Ccl1 protein_coding Interval_117212 chr4 120615538 120617386 + 0 NA intron (ENSMUSG00000086187.1, intron 1 of 3) lincRNA-intron (ENSMUSG00000086187.1, intron 1 of 3) 622 ENSMUSG00000086187.1 ENSMUSG00000086187 ENSMUST00000148457 Gm12860 lincRNA Interval_46859 chr13 72638468 72640683 + 0 NA Intergenic Intergenic 6978 ENSMUSG00000001504.10 ENSMUSG00000001504 ENSMUST00000172353 Irx2 protein_coding Interval_135201 chr6 37455653 37455909 + 0 NA Intergenic Intergenic -83900 ENSMUSG00000038641.12 ENSMUSG00000038641 ENSMUST00000123648 Akr1d1 protein_coding Interval_46534 chr13 66904821 66905770 + 0 NA promoter-TSS (ENSMUSG00000021520.4) protein_coding-promoter-TSS (ENSMUSG00000021520.4) 381 ENSMUSG00000074826.10 ENSMUSG00000074826 ENSMUST00000099412 Gm10767 protein_coding Interval_7943 chr1 134688114 134688442 + 0 NA intron (ENSMUSG00000026452.15, intron 2 of 9) protein_coding-intron (ENSMUSG00000026452.15, intron 1 of 2) 41597 ENSMUSG00000026452.15 ENSMUSG00000026452 ENSMUST00000187702 Syt2 protein_coding Interval_125499 chr5 67666928 67667886 + 0 NA exon (ENSMUSG00000037685.15, exon 27 of 37) protein_coding-exon (ENSMUSG00000037685.15, exon 27 of 37) 25006 ENSMUSG00000085363.1 ENSMUSG00000085363 ENSMUST00000145914 Gm15478 antisense Interval_40129 chr12 101818430 101819622 + 0 NA promoter-TSS (ENSMUSG00000021186.9) protein_coding-promoter-TSS (ENSMUSG00000021186.9) -558 ENSMUSG00000021186.9 ENSMUSG00000021186 ENSMUST00000221373 Fbln5 protein_coding Interval_4906 chr1 82289817 82293092 + 0 NA promoter-TSS (ENSMUSG00000055980.2) protein_coding-promoter-TSS (ENSMUSG00000055980.2) -38 ENSMUSG00000055980.2 ENSMUSG00000055980 ENSMUST00000069799 Irs1 protein_coding Interval_38544 chr12 80014219 80015047 + 0 NA Intergenic Intergenic -34782 ENSMUSG00000112292.1 ENSMUSG00000112292 ENSMUST00000219732 Gm8275 processed_pseudogene Interval_13358 chr10 17095113 17095602 + 0 NA intron (ENSMUSG00000101969.2, intron 1 of 12) processed_transcript-intron (ENSMUSG00000101969.2, intron 1 of 8) -21447 ENSMUSG00000088436.1 ENSMUSG00000088436 ENSMUST00000157811 Gm25382 snRNA Interval_74442 chr17 50638556 50639670 + 0 NA intron (ENSMUSG00000038910.7, intron 3 of 5) protein_coding-intron (ENSMUSG00000038910.7, intron 3 of 5) 32119 ENSMUSG00000038910.7 ENSMUSG00000038910 ENSMUST00000233823 Plcl2 protein_coding Interval_123960 chr5 36880856 36881439 + 0 NA intron (ENSMUSG00000029120.10, intron 1 of 3) protein_coding-intron (ENSMUSG00000029120.10, intron 1 of 8) -4268 ENSMUSG00000087487.1 ENSMUSG00000087487 ENSMUST00000152862 Ppp2r2cos antisense Interval_152591 chr7 134902683 134902944 + 0 NA exon (ENSMUSG00000110167.1, exon 1 of 1) TEC-exon (ENSMUSG00000110167.1, exon 1 of 1) 2143 ENSMUSG00000110167.1 ENSMUSG00000110167 ENSMUST00000210342 Gm45532 TEC Interval_102094 chr3 17101915 17102124 + 0 NA Intergenic Intergenic 128956 ENSMUSG00000095827.2 ENSMUSG00000095827 ENSMUST00000177874 Gm5283 processed_pseudogene Interval_128010 chr5 110263972 110264230 + 0 NA intron (ENSMUSG00000087439.1, intron 1 of 1) protein_coding-intron (ENSMUSG00000029500.16, intron 5 of 5) 1940 ENSMUSG00000087439.1 ENSMUSG00000087439 ENSMUST00000130123 Gm15788 antisense Interval_128305 chr5 112432860 112433404 + 0 NA intron (ENSMUSG00000058153.15, intron 10 of 14) protein_coding-intron (ENSMUSG00000058153.15, intron 12 of 16) -16294 ENSMUSG00000072722.2 ENSMUSG00000072722 ENSMUST00000100882 Gm6588 protein_coding Interval_34162 chr11 121004002 121004674 + 0 NA promoter-TSS (ENSMUSG00000081686.1) processed_pseudogene-promoter-TSS (ENSMUSG00000081686.1) -554 ENSMUSG00000081686.1 ENSMUSG00000081686 ENSMUST00000118601 Gm11774 processed_pseudogene Interval_165952 chr9 54913354 54913597 + 0 NA TTS (ENSMUSG00000032293.8) protein_coding-TTS (ENSMUSG00000032293.8) -3872 ENSMUSG00000035878.13 ENSMUSG00000035878 ENSMUST00000135648 Hykk protein_coding Interval_90477 chr2 30699713 30700382 + 0 NA Intergenic Intergenic 20010 ENSMUSG00000075416.5 ENSMUSG00000075416 ENSMUST00000131207 Gm14488 processed_transcript Interval_140787 chr6 121345305 121345757 + 0 NA intron (ENSMUSG00000030109.15, intron 1 of 1) protein_coding-intron (ENSMUSG00000030109.15, intron 1 of 14) -11289 ENSMUSG00000030109.15 ENSMUSG00000030109 ENSMUST00000170339 Slc6a12 protein_coding Interval_121235 chr4 154281945 154282402 + 0 NA exon (ENSMUSG00000029032.12, exon 1 of 5) protein_coding-exon (ENSMUSG00000029032.12, exon 1 of 5) 19490 ENSMUSG00000029032.12 ENSMUSG00000029032 ENSMUST00000152947 Arhgef16 protein_coding Interval_3532 chr1 59394011 59394464 + 0 NA Intergenic Intergenic 15307 ENSMUSG00000099922.1 ENSMUSG00000099922 ENSMUST00000187523 Gm29016 lincRNA Interval_119223 chr4 136296238 136296651 + 0 NA Intergenic Intergenic 11442 ENSMUSG00000081330.1 ENSMUSG00000081330 ENSMUST00000119087 Gm13013 processed_pseudogene Interval_142853 chr6 146460895 146461700 + 0 NA intron (ENSMUSG00000030287.15, intron 1 of 18) protein_coding-intron (ENSMUSG00000030287.15, intron 2 of 56) 2310 ENSMUSG00000082120.1 ENSMUSG00000082120 ENSMUST00000117133 Gm15720 processed_pseudogene Interval_145524 chr7 35361853 35363491 + 0 NA intron (ENSMUSG00000030494.13, intron 3 of 15) protein_coding-intron (ENSMUSG00000030494.13, intron 3 of 14) -19893 ENSMUSG00000030494.13 ENSMUSG00000030494 ENSMUST00000187997 Rhpn2 protein_coding Interval_12317 chr1 191659474 191659756 + 0 NA Intergenic Intergenic -58412 ENSMUSG00000026623.16 ENSMUSG00000026623 ENSMUST00000130876 Lpgat1 protein_coding Interval_68804 chr16 87093100 87093349 + 0 NA Intergenic Intergenic 35215 ENSMUSG00000116979.1 ENSMUSG00000116979 ENSMUST00000232056 Gm32865 lincRNA Interval_46757 chr13 69995211 69996808 + 0 NA Intergenic Intergenic 11605 ENSMUSG00000113980.1 ENSMUSG00000113980 ENSMUST00000221449 Gm47655 processed_pseudogene Interval_68130 chr16 65529421 65530041 + 0 NA exon (ENSMUSG00000004842.18, exon 3 of 7) protein_coding-exon (ENSMUSG00000004842.18, exon 3 of 7) -3560 ENSMUSG00000116699.1 ENSMUSG00000116699 ENSMUST00000232553 Gm49631 lincRNA Interval_154612 chr8 22059892 22061155 + 0 NA promoter-TSS (ENSMUSG00000006567.11) protein_coding-promoter-TSS (ENSMUSG00000006567.11) -504 ENSMUSG00000006567.11 ENSMUSG00000006567 ENSMUST00000110738 Atp7b protein_coding Interval_57390 chr15 10498306 10498862 + 0 NA exon (ENSMUSG00000022248.14, exon 6 of 6) protein_coding-exon (ENSMUSG00000022248.14, exon 6 of 6) 12535 ENSMUSG00000022248.14 ENSMUSG00000022248 ENSMUST00000170100 Rad1 protein_coding Interval_11571 chr1 182814636 182816274 + 0 NA intron (ENSMUSG00000038576.15, intron 2 of 2) protein_coding-intron (ENSMUSG00000038576.15, intron 1 of 7) 50899 ENSMUSG00000038576.15 ENSMUSG00000038576 ENSMUST00000085724 Susd4 protein_coding Interval_6617 chr1 118336980 118337498 + 0 NA Intergenic Intergenic 15087 ENSMUSG00000026377.12 ENSMUSG00000026377 ENSMUST00000161495 Nifk protein_coding Interval_26206 chr11 55084306 55084516 + 0 NA Intergenic Intergenic -6280 ENSMUSG00000049588.13 ENSMUSG00000049588 ENSMUST00000108880 Ccdc69 protein_coding Interval_171879 chr9 121982450 121983871 + 0 NA TTS (ENSMUSG00000066235.7) protein_coding-TTS (ENSMUSG00000066235.7) 12853 ENSMUSG00000066235.7 ENSMUSG00000066235 ENSMUST00000215008 Pomgnt2 protein_coding Interval_173475 chrX 94625034 94625361 + 0 NA Intergenic Intergenic 9397 ENSMUSG00000080974.2 ENSMUSG00000080974 ENSMUST00000117321 Gm9009 processed_pseudogene Interval_13328 chr10 15109620 15109820 + 0 NA Intergenic Intergenic -26183 ENSMUSG00000112475.1 ENSMUSG00000112475 ENSMUST00000218676 Gm47703 processed_pseudogene Interval_150848 chr7 115620326 115620695 + 0 NA intron (ENSMUSG00000051910.13, intron 7 of 11) protein_coding-intron (ENSMUSG00000051910.13, intron 7 of 16) 225641 ENSMUSG00000051910.13 ENSMUSG00000051910 ENSMUST00000206912 Sox6 protein_coding Interval_167787 chr9 72701309 72701980 + 0 NA intron (ENSMUSG00000032216.15, intron 1 of 20) protein_coding-intron (ENSMUSG00000032216.15, intron 6 of 28) 10095 ENSMUSG00000102573.1 ENSMUSG00000102573 ENSMUST00000192735 Gm7265 TEC Interval_112282 chr4 39928458 39928679 + 0 NA Intergenic Intergenic -32406 ENSMUSG00000084220.1 ENSMUSG00000084220 ENSMUST00000118573 Gm12387 processed_pseudogene Interval_22477 chr11 10909612 10909979 + 0 NA Intergenic Intergenic -206690 ENSMUSG00000050830.17 ENSMUSG00000050830 ENSMUST00000154155 Vwc2 protein_coding Interval_38554 chr12 80108935 80110396 + 0 NA exon (ENSMUSG00000021127.7, exon 2 of 2) protein_coding-exon (ENSMUSG00000021127.7, exon 2 of 2) 3329 ENSMUSG00000021127.7 ENSMUSG00000021127 ENSMUST00000218835 Zfp36l1 protein_coding Interval_144154 chr7 19685896 19688164 + 0 NA Intergenic Intergenic 5574 ENSMUSG00000040564.14 ENSMUSG00000040564 ENSMUST00000207500 Apoc1 protein_coding Interval_19246 chr10 95745725 95746092 + 0 NA promoter-TSS (ENSMUSG00000101517.6) lincRNA-promoter-TSS (ENSMUSG00000101517.6) -169 ENSMUSG00000101517.6 ENSMUSG00000101517 ENSMUST00000185499 4732465J04Rik lincRNA Interval_7107 chr1 125981212 125981960 + 0 NA exon (ENSMUSG00000049690.15, exon 11 of 13) protein_coding-exon (ENSMUSG00000049690.15, exon 11 of 13) -59624 ENSMUSG00000104519.1 ENSMUSG00000104519 ENSMUST00000191994 Gm37161 TEC Interval_969 chr1 13535027 13535411 + 0 NA Intergenic Intergenic 54656 ENSMUSG00000025935.10 ENSMUSG00000025935 ENSMUST00000188377 Tram1 protein_coding Interval_137482 chr6 72707702 72707961 + 0 NA intron (ENSMUSG00000055799.13, intron 2 of 5) protein_coding-intron (ENSMUSG00000055799.13, intron 3 of 11) 8617 ENSMUSG00000079524.2 ENSMUSG00000079524 ENSMUST00000114051 Gm15402 antisense Interval_110644 chr4 5673407 5674364 + 0 NA intron (ENSMUSG00000049119.14, intron 1 of 1) protein_coding-intron (ENSMUSG00000049119.14, intron 1 of 2) 13917 ENSMUSG00000077392.1 ENSMUSG00000077392 ENSMUST00000104204 Gm24337 snoRNA Interval_105541 chr3 87525092 87526371 + 0 NA exon (ENSMUSG00000003382.18, exon 1 of 3) protein_coding-exon (ENSMUSG00000003382.18, exon 1 of 3) 153 ENSMUSG00000003382.18 ENSMUSG00000003382 ENSMUST00000152010 Etv3 protein_coding Interval_53335 chr14 56364364 56365564 + 0 NA promoter-TSS (ENSMUSG00000022229.3) protein_coding-promoter-TSS (ENSMUSG00000022229.3) -11034 ENSMUSG00000022229.3 ENSMUSG00000022229 ENSMUST00000225698 Atp12a protein_coding Interval_172924 chrX 56292817 56293202 + 0 NA Intergenic Intergenic -24599 ENSMUSG00000085114.1 ENSMUSG00000085114 ENSMUST00000138262 1600025M17Rik lincRNA Interval_162742 chr9 8221642 8222493 + 0 NA promoter-TSS (ENSMUSG00000031998.5) transcribed_processed_pseudogene-promoter-TSS (ENSMUSG00000031998.5) 97 ENSMUSG00000031998.5 ENSMUSG00000031998 ENSMUST00000213708 1700128F08Rik transcribed_processed_pseudogene Interval_29666 chr11 85899942 85901182 + 0 NA intron (ENSMUSG00000000094.12, intron 5 of 8) protein_coding-intron (ENSMUSG00000000094.12, intron 4 of 7) 14140 ENSMUSG00000000094.12 ENSMUSG00000000094 ENSMUST00000108045 Tbx4 protein_coding Interval_28582 chr11 76957994 76959166 + 0 NA intron (ENSMUSG00000020840.10, intron 5 of 10) protein_coding-intron (ENSMUSG00000020840.10, intron 6 of 11) 12729 ENSMUSG00000020840.10 ENSMUSG00000020840 ENSMUST00000145732 Blmh protein_coding Interval_121330 chr4 155024690 155025235 + 0 NA intron (ENSMUSG00000029055.17, intron 1 of 6) protein_coding-intron (ENSMUSG00000029055.17, intron 2 of 3) -17084 ENSMUSG00000073686.2 ENSMUSG00000073686 ENSMUST00000097750 Gm10564 antisense Interval_67382 chr16 48261794 48262034 + 0 NA promoter-TSS (ENSMUSG00000116756.1) processed_pseudogene-promoter-TSS (ENSMUSG00000116756.1) 100 ENSMUSG00000116756.1 ENSMUSG00000116756 ENSMUST00000232184 Gm49770 processed_pseudogene Interval_110173 chr3 153959199 153959982 + 0 NA Intergenic Intergenic -21781 ENSMUSG00000062908.12 ENSMUSG00000062908 ENSMUST00000135724 Acadm protein_coding Interval_71435 chr17 23739452 23740976 + 0 NA TTS (ENSMUSG00000040680.9) protein_coding-TTS (ENSMUSG00000040680.9) 653 ENSMUSG00000023909.4 ENSMUSG00000023909 ENSMUST00000233776 Paqr4 protein_coding Interval_160648 chr8 111299510 111300927 + 0 NA promoter-TSS (ENSMUSG00000033596.5) protein_coding-promoter-TSS (ENSMUSG00000033596.5) -27 ENSMUSG00000033596.5 ENSMUSG00000033596 ENSMUST00000212958 Rfwd3 protein_coding Interval_65275 chr16 21179279 21179510 + 0 NA Intergenic Intergenic -25394 ENSMUSG00000090356.2 ENSMUSG00000090356 ENSMUST00000170665 Teddm3 protein_coding Interval_17840 chr10 80340029 80340623 + 0 NA promoter-TSS (ENSMUSG00000043822.18) protein_coding-promoter-TSS (ENSMUSG00000043822.18) 4912 ENSMUSG00000043822.18 ENSMUSG00000043822 ENSMUST00000138705 Adamtsl5 protein_coding Interval_18228 chr10 83934600 83935022 + 0 NA Intergenic Intergenic 32959 ENSMUSG00000112133.1 ENSMUSG00000112133 ENSMUST00000217741 Gm47247 processed_pseudogene Interval_160589 chr8 110888903 110889494 + 0 NA exon (ENSMUSG00000033703.9, exon 15 of 24) protein_coding-exon (ENSMUSG00000033703.9, exon 15 of 24) 13290 ENSMUSG00000033703.9 ENSMUSG00000033703 ENSMUST00000212568 Fcsk protein_coding Interval_156664 chr8 56591179 56591709 + 0 NA TTS (ENSMUSG00000038206.13) protein_coding-TTS (ENSMUSG00000038206.13) 3524 ENSMUSG00000038206.13 ENSMUSG00000038206 ENSMUST00000211294 Fbxo8 protein_coding Interval_162256 chr8 126491187 126491574 + 0 NA Intergenic Intergenic -14968 ENSMUSG00000074026.3 ENSMUSG00000074026 ENSMUST00000098307 Gm6091 processed_pseudogene Interval_42478 chr13 13994920 13995197 + 0 NA promoter-TSS (ENSMUSG00000039242.10) protein_coding-promoter-TSS (ENSMUSG00000039242.10) 14445 ENSMUSG00000039233.12 ENSMUSG00000039233 ENSMUST00000160776 Tbce protein_coding Interval_100929 chr2 173409092 173409628 + 0 NA Intergenic Intergenic 14794 ENSMUSG00000086114.1 ENSMUSG00000086114 ENSMUST00000147357 Gm14642 lincRNA Interval_43531 chr13 32822970 32823747 + 0 NA TTS (ENSMUSG00000021400.8) protein_coding-TTS (ENSMUSG00000021400.8) 2592 ENSMUSG00000021400.8 ENSMUSG00000021400 ENSMUST00000230949 Wrnip1 protein_coding Interval_97326 chr2 134470925 134471147 + 0 NA Intergenic Intergenic 83271 ENSMUSG00000027261.2 ENSMUSG00000027261 ENSMUST00000140794 Hao1 protein_coding Interval_148009 chr7 77874795 77875260 + 0 NA Intergenic Intergenic 35293 ENSMUSG00000064940.1 ENSMUSG00000064940 ENSMUST00000083006 Gm23239 snRNA Interval_120939 chr4 151773881 151774364 + 0 NA intron (ENSMUSG00000014592.21, intron 2 of 7) protein_coding-intron (ENSMUSG00000014592.21, intron 3 of 23) 87582 ENSMUSG00000014592.21 ENSMUSG00000014592 ENSMUST00000135780 Camta1 protein_coding Interval_101665 chr3 8712224 8712948 + 0 NA Intergenic Intergenic 23774 ENSMUSG00000103346.1 ENSMUSG00000103346 ENSMUST00000195781 C230057A21Rik lincRNA Interval_29828 chr11 87126456 87127842 + 0 NA promoter-TSS (ENSMUSG00000018548.15) protein_coding-promoter-TSS (ENSMUSG00000018548.15) -191 ENSMUSG00000085310.7 ENSMUSG00000085310 ENSMUST00000155828 Gm11491 antisense Interval_127494 chr5 104472013 104473002 + 0 NA intron (ENSMUSG00000034462.9, intron 2 of 8) protein_coding-intron (ENSMUSG00000034462.9, intron 2 of 14) -20264 ENSMUSG00000034462.9 ENSMUSG00000034462 ENSMUST00000133540 Pkd2 protein_coding Interval_42128 chr13 9039632 9040075 + 0 NA intron (ENSMUSG00000113543.1, intron 2 of 4) lincRNA-intron (ENSMUSG00000113543.1, intron 2 of 2) 36598 ENSMUSG00000113543.1 ENSMUSG00000113543 ENSMUST00000221989 Gm36264 lincRNA Interval_45485 chr13 55394252 55394714 + 0 NA Intergenic Intergenic -13836 ENSMUSG00000021490.11 ENSMUSG00000021490 ENSMUST00000223954 Slc34a1 protein_coding Interval_72139 chr17 28237609 28238614 + 0 NA intron (ENSMUSG00000002250.16, intron 2 of 6) protein_coding-intron (ENSMUSG00000002250.16, intron 2 of 7) 5337 ENSMUSG00000002250.16 ENSMUSG00000002250 ENSMUST00000233383 Ppard protein_coding Interval_144681 chr7 27498952 27499347 + 0 NA promoter-TSS (ENSMUSG00000053198.14) protein_coding-promoter-TSS (ENSMUSG00000053198.14) 1761 ENSMUSG00000053198.14 ENSMUSG00000053198 ENSMUST00000065487 Prx protein_coding Interval_48953 chr13 105725293 105725858 + 0 NA Intergenic Intergenic 108103 ENSMUSG00000114671.1 ENSMUSG00000114671 ENSMUST00000225365 Gm48211 processed_pseudogene Interval_126492 chr5 89079655 89080270 + 0 NA intron (ENSMUSG00000060961.16, intron 7 of 25) protein_coding-intron (ENSMUSG00000060961.16, intron 6 of 24) 193476 ENSMUSG00000060961.16 ENSMUSG00000060961 ENSMUST00000134303 Slc4a4 protein_coding Interval_91886 chr2 51025085 51026747 + 0 NA Intergenic Intergenic 116232 ENSMUSG00000083270.1 ENSMUSG00000083270 ENSMUST00000119159 Gm13498 processed_pseudogene Interval_63010 chr15 98634430 98635403 + 0 NA promoter-TSS (ENSMUSG00000003352.14) protein_coding-promoter-TSS (ENSMUSG00000003352.14) 3111 ENSMUSG00000003352.14 ENSMUSG00000003352 ENSMUST00000230064 Cacnb3 protein_coding Interval_152944 chr7 139957561 139958323 + 0 NA promoter-TSS (ENSMUSG00000065502.1) miRNA-promoter-TSS (ENSMUSG00000065502.1) 97 ENSMUSG00000085354.1 ENSMUSG00000085354 ENSMUST00000130771 Gm2044 lincRNA Interval_18202 chr10 83661229 83662370 + 0 NA Intergenic Intergenic 2528 ENSMUSG00000112072.1 ENSMUSG00000112072 ENSMUST00000218849 Gm47244 processed_pseudogene Interval_91091 chr2 34972331 34973296 + 0 NA Intergenic Intergenic -7909 ENSMUSG00000083533.2 ENSMUSG00000083533 ENSMUST00000121107 Gm13450 processed_pseudogene Interval_85626 chr19 29148891 29150449 + 0 NA Intergenic Intergenic -10448 ENSMUSG00000068466.6 ENSMUSG00000068466 ENSMUST00000084171 Gm5518 processed_pseudogene Interval_1831 chr1 34058144 34059881 + 0 NA intron (ENSMUSG00000026131.20, intron 1 of 97) protein_coding-intron (ENSMUSG00000026131.20, intron 1 of 97) -18215 ENSMUSG00000026131.20 ENSMUSG00000026131 ENSMUST00000182507 Dst protein_coding Interval_148347 chr7 80660125 80660998 + 0 NA intron (ENSMUSG00000030527.15, intron 2 of 14) protein_coding-intron (ENSMUSG00000030527.15, intron 2 of 14) 24544 ENSMUSG00000084821.1 ENSMUSG00000084821 ENSMUST00000142678 Gm15880 antisense Interval_41919 chr13 4425292 4425520 + 0 NA Intergenic Intergenic -21689 ENSMUSG00000021210.16 ENSMUSG00000021210 ENSMUST00000223118 Akr1c6 protein_coding Interval_93825 chr2 77249719 77250431 + 0 NA intron (ENSMUSG00000042272.17, intron 1 of 11) protein_coding-intron (ENSMUSG00000042272.17, intron 1 of 17) 6348 ENSMUSG00000084087.1 ENSMUSG00000084087 ENSMUST00000117729 Gm13650 processed_pseudogene Interval_8818 chr1 151366640 151366919 + 0 NA TTS (ENSMUSG00000052748.14) protein_coding-TTS (ENSMUSG00000052748.14) 5532 ENSMUSG00000023150.14 ENSMUSG00000023150 ENSMUST00000190872 Ivns1abp protein_coding Interval_30401 chr11 94146486 94147119 + 0 NA intron (ENSMUSG00000086003.7, intron 2 of 3) processed_transcript-intron (ENSMUSG00000086003.7, intron 2 of 5) 13300 ENSMUSG00000086003.7 ENSMUSG00000086003 ENSMUST00000125406 B230206L02Rik processed_transcript Interval_136052 chr6 50336896 50337711 + 0 NA intron (ENSMUSG00000029822.15, intron 2 of 5) protein_coding-intron (ENSMUSG00000029822.15, intron 10 of 21) 14654 ENSMUSG00000029822.15 ENSMUSG00000029822 ENSMUST00000154333 Osbpl3 protein_coding Interval_147301 chr7 65684416 65684802 + 0 NA TTS (ENSMUSG00000030515.9) protein_coding-TTS (ENSMUSG00000030515.9) -8867 ENSMUSG00000078681.10 ENSMUSG00000078681 ENSMUST00000206361 Tm2d3 protein_coding Interval_6059 chr1 95313349 95314662 + 0 NA exon (ENSMUSG00000051185.9, exon 1 of 3) protein_coding-exon (ENSMUSG00000051185.9, exon 1 of 3) 377 ENSMUSG00000051185.9 ENSMUSG00000051185 ENSMUST00000186780 Fam174a protein_coding Interval_47604 chr13 89861675 89862464 + 0 NA intron (ENSMUSG00000021615.13, intron 7 of 7) protein_coding-intron (ENSMUSG00000021615.13, intron 7 of 7) 65474 ENSMUSG00000089070.1 ENSMUSG00000089070 ENSMUST00000158445 Gm24498 snRNA Interval_117063 chr4 119305202 119305415 + 0 NA intron (ENSMUSG00000060288.13, intron 9 of 9) protein_coding-intron (ENSMUSG00000060288.13, intron 9 of 9) -9847 ENSMUSG00000102819.1 ENSMUSG00000102819 ENSMUST00000195276 Gm37817 TEC Interval_97144 chr2 131739010 131739426 + 0 NA Intergenic Intergenic -17380 ENSMUSG00000086831.1 ENSMUSG00000086831 ENSMUST00000138080 Gm14280 antisense Interval_104817 chr3 75164512 75165336 + 0 NA intron (ENSMUSG00000034151.13, intron 1 of 7) protein_coding-intron (ENSMUSG00000034151.13, intron 1 of 7) 110 ENSMUSG00000034151.13 ENSMUSG00000034151 ENSMUST00000124618 Zbbx protein_coding Interval_50324 chr14 11851182 11851447 + 0 NA intron (ENSMUSG00000021745.14, intron 2 of 3) protein_coding-intron (ENSMUSG00000021745.14, intron 2 of 29) -16280 ENSMUSG00000114431.1 ENSMUSG00000114431 ENSMUST00000224051 Gm48601 TEC Interval_85707 chr19 29865149 29865579 + 0 NA Intergenic Intergenic 9853 ENSMUSG00000117883.1 ENSMUSG00000117883 ENSMUST00000237701 Gm50380 processed_pseudogene Interval_143289 chr7 4970581 4970931 + 0 NA intron (ENSMUSG00000085272.7, intron 1 of 3) protein_coding-intron (ENSMUSG00000085272.7, intron 1 of 3) 205 ENSMUSG00000085272.7 ENSMUSG00000085272 ENSMUST00000133272 Sbk3 protein_coding Interval_100294 chr2 168229853 168231912 + 0 NA promoter-TSS (ENSMUSG00000078919.10) protein_coding-promoter-TSS (ENSMUSG00000078919.10) 260 ENSMUSG00000074576.4 ENSMUSG00000074576 ENSMUST00000099071 Mocs3 protein_coding Interval_51303 chr14 25855396 25856151 + 0 NA intron (ENSMUSG00000021866.15, intron 1 of 13) protein_coding-intron (ENSMUSG00000021866.15, intron 1 of 14) 13590 ENSMUSG00000021866.15 ENSMUSG00000021866 ENSMUST00000133547 Anxa11 protein_coding Interval_171094 chr9 114509536 114509784 + 0 NA exon (ENSMUSG00000079259.2, exon 4 of 4) protein_coding-exon (ENSMUSG00000079259.2, exon 4 of 4) -4744 ENSMUSG00000047898.7 ENSMUSG00000047898 ENSMUST00000215959 Ccr4 protein_coding Interval_148087 chr7 79148362 79149642 + 0 NA promoter-TSS (ENSMUSG00000030605.15) protein_coding-promoter-TSS (ENSMUSG00000030605.15) -771 ENSMUSG00000030605.15 ENSMUSG00000030605 ENSMUST00000206844 Mfge8 protein_coding Interval_14865 chr10 40628811 40629887 + 0 NA promoter-TSS (ENSMUSG00000063428.8) protein_coding-promoter-TSS (ENSMUSG00000063428.8) -728 ENSMUSG00000063428.8 ENSMUSG00000063428 ENSMUST00000214618 Ddo protein_coding Interval_141295 chr6 127005598 127006899 + 0 NA Intergenic Intergenic -9338 ENSMUSG00000000183.6 ENSMUSG00000000183 ENSMUST00000000187 Fgf6 protein_coding Interval_106331 chr3 95415907 95416141 + 0 NA promoter-TSS (ENSMUSG00000104646.1) processed_pseudogene-promoter-TSS (ENSMUSG00000104646.1) -599 ENSMUSG00000104646.1 ENSMUSG00000104646 ENSMUST00000198054 Gm9173 processed_pseudogene Interval_102057 chr3 16234059 16234347 + 0 NA Intergenic Intergenic 50967 ENSMUSG00000047213.14 ENSMUSG00000047213 ENSMUST00000108346 Ythdf3 protein_coding Interval_128610 chr5 114289044 114289343 + 0 NA promoter-TSS (ENSMUSG00000066952.11) protein_coding-promoter-TSS (ENSMUSG00000066952.11) -15444 ENSMUSG00000042002.11 ENSMUSG00000042002 ENSMUST00000147953 Foxn4 protein_coding Interval_81172 chr18 55628161 55628553 + 0 NA Intergenic Intergenic -5437 ENSMUSG00000092702.2 ENSMUSG00000092702 ENSMUST00000174961 Gm24514 misc_RNA Interval_16270 chr10 61834400 61834909 + 0 NA Intergenic Intergenic 14557 ENSMUSG00000058806.15 ENSMUSG00000058806 ENSMUST00000153120 Col13a1 protein_coding Interval_128103 chr5 110889849 110890181 + 0 NA intron (ENSMUSG00000033209.17, intron 1 of 22) protein_coding-intron (ENSMUSG00000033209.17, intron 1 of 23) 10212 ENSMUSG00000033209.17 ENSMUSG00000033209 ENSMUST00000129017 Ttc28 protein_coding Interval_66031 chr16 31059189 31059406 + 0 NA intron (ENSMUSG00000047434.14, intron 1 of 3) protein_coding-intron (ENSMUSG00000047434.14, intron 1 of 3) 10529 ENSMUSG00000047434.14 ENSMUSG00000047434 ENSMUST00000142870 Xxylt1 protein_coding Interval_5401 chr1 88504413 88504953 + 0 NA intron (ENSMUSG00000062310.7, intron 1 of 2) protein_coding-intron (ENSMUSG00000062310.7, intron 1 of 2) 5383 ENSMUSG00000062310.7 ENSMUSG00000062310 ENSMUST00000067625 Glrp1 protein_coding Interval_47774 chr13 92575931 92576501 + 0 NA promoter-TSS (ENSMUSG00000046957.5) protein_coding-promoter-TSS (ENSMUSG00000046957.5) -44 ENSMUSG00000046957.5 ENSMUSG00000046957 ENSMUST00000050658 Spz1 protein_coding Interval_70878 chr17 15532985 15533312 + 0 NA Intergenic Intergenic 3556 ENSMUSG00000116949.1 ENSMUSG00000116949 ENSMUST00000232517 Gm7177 processed_pseudogene Interval_15027 chr10 42029128 42030046 + 0 NA Intergenic Intergenic -11207 ENSMUSG00000071324.11 ENSMUSG00000071324 ENSMUST00000161081 Armc2 protein_coding Interval_46133 chr13 61909670 61910322 + 0 NA Intergenic Intergenic -7553 ENSMUSG00000113887.1 ENSMUSG00000113887 ENSMUST00000222548 Gm35619 processed_pseudogene Interval_89732 chr2 25054199 25056077 + 0 NA promoter-TSS (ENSMUSG00000006476.19) protein_coding-promoter-TSS (ENSMUSG00000006476.19) 37 ENSMUSG00000092845.1 ENSMUSG00000092845 ENSMUST00000175104 Gm24328 miRNA Interval_84673 chr19 14898731 14898929 + 0 NA Intergenic Intergenic 61936 ENSMUSG00000063586.1 ENSMUSG00000063586 ENSMUST00000072982 Gm5513 processed_pseudogene Interval_21850 chr11 4738192 4738955 + 0 NA TTS (ENSMUSG00000009076.10) protein_coding-TTS (ENSMUSG00000009076.10) 8205 ENSMUSG00000009075.2 ENSMUSG00000009075 ENSMUST00000009219 Cabp7 protein_coding Interval_9183 chr1 154819621 154820746 + 0 NA intron (ENSMUSG00000004110.17, intron 1 of 3) protein_coding-intron (ENSMUSG00000004110.17, intron 1 of 3) -3242 ENSMUSG00000004110.17 ENSMUSG00000004110 ENSMUST00000186256 Cacna1e protein_coding Interval_88557 chr2 6117890 6118891 + 0 NA intron (ENSMUSG00000045319.13, intron 1 of 3) protein_coding-intron (ENSMUSG00000045319.13, intron 1 of 3) 11791 ENSMUSG00000045319.13 ENSMUSG00000045319 ENSMUST00000194054 Proser2 protein_coding Interval_112373 chr4 40898097 40899514 + 0 NA Intergenic Intergenic 14550 ENSMUSG00000081309.3 ENSMUSG00000081309 ENSMUST00000117674 Gm12397 processed_pseudogene Interval_17942 chr10 80927915 80928569 + 0 NA Intergenic Intergenic -1919 ENSMUSG00000015312.9 ENSMUSG00000015312 ENSMUST00000219449 Gadd45b protein_coding Interval_111849 chr4 31959925 31960126 + 0 NA Intergenic Intergenic -25642 ENSMUSG00000028284.13 ENSMUSG00000028284 ENSMUST00000131310 Map3k7 protein_coding Interval_153397 chr7 144412517 144412900 + 0 NA intron (ENSMUSG00000037541.22, intron 12 of 12) protein_coding-intron (ENSMUSG00000037541.22, intron 9 of 9) -5775 ENSMUSG00000085745.1 ENSMUSG00000085745 ENSMUST00000125355 Gm14372 antisense Interval_39800 chr12 98548189 98548399 + 0 NA intron (ENSMUSG00000033854.10, intron 1 of 6) protein_coding-intron (ENSMUSG00000033854.10, intron 1 of 6) -16232 ENSMUSG00000033854.10 ENSMUSG00000033854 ENSMUST00000221906 Kcnk10 protein_coding Interval_47811 chr13 93330657 93330917 + 0 NA intron (ENSMUSG00000007617.18, intron 1 of 8) protein_coding-intron (ENSMUSG00000007617.18, intron 1 of 8) 13360 ENSMUSG00000113076.1 ENSMUSG00000113076 ENSMUST00000223326 Gm47088 TEC Interval_144272 chr7 24153230 24153682 + 0 NA Intergenic Intergenic 19228 ENSMUSG00000047603.9 ENSMUSG00000047603 ENSMUST00000056549 Zfp235 protein_coding Interval_125094 chr5 64391020 64392691 + 0 NA Intergenic Intergenic 8401 ENSMUSG00000105443.1 ENSMUSG00000105443 ENSMUST00000200306 Gm43837 lincRNA Interval_161574 chr8 121297317 121297531 + 0 NA intron (ENSMUSG00000097384.1, intron 1 of 1) protein_coding-intron (ENSMUSG00000092329.1, intron 1 of 15) 59412 ENSMUSG00000097384.1 ENSMUSG00000097384 ENSMUST00000181200 Gm26815 lincRNA Interval_143709 chr7 15859161 15859879 + 0 NA Intergenic Intergenic -19842 ENSMUSG00000041583.8 ENSMUSG00000041583 ENSMUST00000108513 Obox6 protein_coding Interval_80230 chr18 38405779 38407866 + 0 NA Intergenic Intergenic 6462 ENSMUSG00000117986.1 ENSMUSG00000117986 ENSMUST00000235696 Gm50344 processed_pseudogene Interval_30408 chr11 94178939 94180497 + 0 NA Intergenic Intergenic -31736 ENSMUSG00000037573.5 ENSMUSG00000037573 ENSMUST00000041589 Tob1 protein_coding Interval_65082 chr16 18911651 18912238 + 0 NA intron (ENSMUSG00000099908.1, intron 7 of 23) protein_coding-intron (ENSMUSG00000022702.16, intron 6 of 24) -25457 ENSMUSG00000082130.1 ENSMUSG00000082130 ENSMUST00000120899 Gm15799 processed_pseudogene Interval_57476 chr15 11596765 11597336 + 0 NA Intergenic Intergenic -33679 ENSMUSG00000115804.1 ENSMUSG00000115804 ENSMUST00000228129 Gm49107 lincRNA Interval_124561 chr5 50779118 50779573 + 0 NA Intergenic Intergenic -58972 ENSMUSG00000105931.1 ENSMUSG00000105931 ENSMUST00000198568 Gm43014 TEC Interval_11576 chr1 182868220 182869661 + 0 NA intron (ENSMUSG00000038576.15, intron 5 of 8) protein_coding-intron (ENSMUSG00000038576.15, intron 4 of 7) -38770 ENSMUSG00000102291.1 ENSMUSG00000102291 ENSMUST00000192563 Gm37542 TEC Interval_164908 chr9 43022088 43022346 + 0 NA intron (ENSMUSG00000059495.14, intron 7 of 40) protein_coding-intron (ENSMUSG00000059495.14, intron 7 of 41) 4443 ENSMUSG00000059495.14 ENSMUSG00000059495 ENSMUST00000214175 Arhgef12 protein_coding Interval_166720 chr9 62245397 62246088 + 0 NA Intergenic Intergenic -1642 ENSMUSG00000111232.1 ENSMUSG00000111232 ENSMUST00000215490 A730043L09Rik lincRNA Interval_63135 chr15 99279431 99279667 + 0 NA exon (ENSMUSG00000078907.2, exon 4 of 8) protein_coding-exon (ENSMUSG00000078907.2, exon 4 of 8) 16339 ENSMUSG00000078907.2 ENSMUSG00000078907 ENSMUST00000230608 Fam186b protein_coding Interval_110593 chr4 4374567 4374776 + 0 NA Intergenic Intergenic 154048 ENSMUSG00000085155.3 ENSMUSG00000085155 ENSMUST00000136880 Gm11780 processed_pseudogene Interval_132157 chr5 143000289 143000766 + 0 NA intron (ENSMUSG00000045078.12, intron 15 of 16) protein_coding-intron (ENSMUSG00000045078.12, intron 15 of 16) 40151 ENSMUSG00000029581.14 ENSMUSG00000029581 ENSMUST00000135293 Fscn1 protein_coding Interval_26745 chr11 60181998 60182534 + 0 NA intron (ENSMUSG00000062115.15, intron 1 of 4) protein_coding-intron (ENSMUSG00000062115.15, intron 2 of 5) 18351 ENSMUSG00000098547.1 ENSMUSG00000098547 ENSMUST00000183719 Mir6921 miRNA Interval_124463 chr5 48345571 48346650 + 0 NA intron (ENSMUSG00000029089.8, intron 1 of 6) protein_coding-intron (ENSMUSG00000029089.8, intron 1 of 6) 21498 ENSMUSG00000106604.1 ENSMUSG00000106604 ENSMUST00000197312 Gm42535 TEC Interval_78825 chr18 20823496 20823910 + 0 NA intron (ENSMUSG00000033382.15, intron 26 of 28) protein_coding-intron (ENSMUSG00000033382.15, intron 26 of 28) 20889 ENSMUSG00000088549.1 ENSMUSG00000088549 ENSMUST00000157924 Gm24959 snRNA Interval_174358 chrX 147854323 147854656 + 0 NA Intergenic Intergenic 64761 ENSMUSG00000095872.7 ENSMUSG00000095872 ENSMUST00000178833 Gm15128 protein_coding Interval_9037 chr1 153219361 153219912 + 0 NA exon (ENSMUSG00000026478.14, exon 28 of 28) protein_coding-exon (ENSMUSG00000026478.14, exon 28 of 28) 19690 ENSMUSG00000026478.14 ENSMUSG00000026478 ENSMUST00000159251 Lamc1 protein_coding Interval_50302 chr14 11730192 11730789 + 0 NA intron (ENSMUSG00000021745.14, intron 2 of 3) protein_coding-intron (ENSMUSG00000021745.14, intron 2 of 29) -37453 ENSMUSG00000114310.1 ENSMUSG00000114310 ENSMUST00000225152 Gm48602 TEC Interval_138250 chr6 86598922 86599980 + 0 NA Intergenic Intergenic 8021 ENSMUSG00000108059.1 ENSMUSG00000108059 ENSMUST00000204543 Gm44369 TEC Interval_171359 chr9 116976729 116977692 + 0 NA intron (ENSMUSG00000039607.17, intron 5 of 15) protein_coding-intron (ENSMUSG00000039607.17, intron 3 of 12) -81948 ENSMUSG00000092184.1 ENSMUSG00000092184 ENSMUST00000172565 Gm18489 processed_pseudogene Interval_139939 chr6 112919832 112920557 + 0 NA intron (ENSMUSG00000030257.16, intron 1 of 21) protein_coding-intron (ENSMUSG00000030257.16, intron 1 of 9) -26843 ENSMUSG00000108103.1 ENSMUSG00000108103 ENSMUST00000204406 Gm44081 lincRNA Interval_154316 chr8 14355782 14356722 + 0 NA intron (ENSMUSG00000047495.15, intron 2 of 14) protein_coding-intron (ENSMUSG00000047495.15, intron 2 of 14) 6074 ENSMUSG00000106670.1 ENSMUSG00000106670 ENSMUST00000199602 Gm44347 miRNA Interval_18267 chr10 84476475 84477649 + 0 NA Intergenic Intergenic -11672 ENSMUSG00000020033.2 ENSMUSG00000020033 ENSMUST00000168525 4930463O16Rik lincRNA Interval_135593 chr6 41118165 41118899 + 0 NA promoter-TSS (ENSMUSG00000094525.2) TR_V_gene-promoter-TSS (ENSMUSG00000094525.2) -319 ENSMUSG00000094525.2 ENSMUSG00000094525 ENSMUST00000103269 Trbv12-2 TR_V_gene Interval_96089 chr2 119706023 119706267 + 0 NA intron (ENSMUSG00000027304.9, intron 4 of 17) protein_coding-intron (ENSMUSG00000027304.9, intron 4 of 17) -4851 ENSMUSG00000027304.9 ENSMUSG00000027304 ENSMUST00000126984 Rtf1 protein_coding Interval_41350 chr12 112994708 112994976 + 0 NA intron (ENSMUSG00000011158.8, intron 1 of 1) protein_coding-intron (ENSMUSG00000011158.8, intron 1 of 17) -5122 ENSMUSG00000097100.1 ENSMUSG00000097100 ENSMUST00000180971 9230104M06Rik antisense Interval_25105 chr11 43995382 43995611 + 0 NA intron (ENSMUSG00000087172.1, intron 1 of 6) lincRNA-intron (ENSMUSG00000087172.1, intron 1 of 6) 36407 ENSMUSG00000087172.1 ENSMUSG00000087172 ENSMUST00000148504 Gm12153 lincRNA Interval_33090 chr11 114336079 114337216 + 0 NA Intergenic Intergenic -20482 ENSMUSG00000081548.1 ENSMUSG00000081548 ENSMUST00000122121 Gm11692 processed_pseudogene Interval_74557 chr17 53385907 53386181 + 0 NA Intergenic Intergenic 26117 ENSMUSG00000117241.1 ENSMUSG00000117241 ENSMUST00000232913 Gm9214 processed_pseudogene Interval_83471 chr18 86406730 86406983 + 0 NA intron (ENSMUSG00000050321.3, intron 4 of 10) protein_coding-intron (ENSMUSG00000050321.3, intron 4 of 10) 11035 ENSMUSG00000050321.3 ENSMUSG00000050321 ENSMUST00000235167 Neto1 protein_coding Interval_9972 chr1 164460984 164461266 + 0 NA Intergenic Intergenic -1317 ENSMUSG00000104011.1 ENSMUSG00000104011 ENSMUST00000191839 Gm32391 lincRNA Interval_158454 chr8 83814043 83814364 + 0 NA Intergenic Intergenic 61285 ENSMUSG00000084682.1 ENSMUSG00000084682 ENSMUST00000122733 Gm22024 misc_RNA Interval_57068 chr15 5418359 5418720 + 0 NA Intergenic Intergenic -45636 ENSMUSG00000115116.1 ENSMUSG00000115116 ENSMUST00000226389 Gm46496 processed_pseudogene Interval_151996 chr7 128031303 128032027 + 0 NA Intergenic Intergenic 10725 ENSMUSG00000108381.1 ENSMUSG00000108381 ENSMUST00000206392 Gm9299 processed_pseudogene Interval_110304 chr3 156351718 156351967 + 0 NA Intergenic Intergenic 87256 ENSMUSG00000104573.1 ENSMUSG00000104573 ENSMUST00000199214 Gm42886 processed_pseudogene Interval_89625 chr2 23504826 23505789 + 0 NA TTS (ENSMUSG00000026771.14) protein_coding-TTS (ENSMUSG00000026771.14) -3553 ENSMUSG00000081519.1 ENSMUSG00000081519 ENSMUST00000117500 Gm13331 processed_pseudogene Interval_165972 chr9 55095271 55096469 + 0 NA promoter-TSS (ENSMUSG00000110793.1) processed_pseudogene-promoter-TSS (ENSMUSG00000110793.1) -500 ENSMUSG00000110793.1 ENSMUSG00000110793 ENSMUST00000216059 Gm7395 processed_pseudogene Interval_36040 chr12 33591381 33592204 + 0 NA Intergenic Intergenic -94895 ENSMUSG00000112076.1 ENSMUSG00000112076 ENSMUST00000219348 Gm9368 processed_pseudogene Interval_96553 chr2 125623023 125625133 + 0 NA intron (ENSMUSG00000068394.4, intron 1 of 27) protein_coding-intron (ENSMUSG00000068394.4, intron 1 of 27) 1035 ENSMUSG00000068394.4 ENSMUSG00000068394 ENSMUST00000089776 Cep152 protein_coding Interval_117683 chr4 125525254 125525704 + 0 NA intron (ENSMUSG00000001985.9, intron 1 of 15) protein_coding-intron (ENSMUSG00000001985.9, intron 1 of 15) 20730 ENSMUSG00000094403.1 ENSMUSG00000094403 ENSMUST00000102081 Mir692-2 miRNA Interval_163030 chr9 14671291 14672570 + 0 NA Intergenic Intergenic -8040 ENSMUSG00000111330.1 ENSMUSG00000111330 ENSMUST00000214414 Gm19790 processed_pseudogene Interval_134456 chr6 28898734 28899394 + 0 NA intron (ENSMUSG00000001424.14, intron 16 of 16) protein_coding-intron (ENSMUSG00000001424.14, intron 16 of 16) -68719 ENSMUSG00000049939.6 ENSMUSG00000049939 ENSMUST00000062304 Lrrc4 protein_coding Interval_93503 chr2 73590285 73590563 + 0 NA Intergenic Intergenic 5564 ENSMUSG00000086382.1 ENSMUSG00000086382 ENSMUST00000147235 Chrna1os antisense Interval_47793 chr13 92884799 92885346 + 0 NA Intergenic Intergenic -13214 ENSMUSG00000114823.1 ENSMUSG00000114823 ENSMUST00000225872 Gm31630 processed_transcript Interval_166141 chr9 56994487 56996253 + 0 NA exon (ENSMUSG00000032290.7, exon 1 of 13) protein_coding-exon (ENSMUSG00000032290.7, exon 1 of 13) -26862 ENSMUSG00000032290.7 ENSMUSG00000032290 ENSMUST00000215707 Ptpn9 protein_coding Interval_155727 chr8 36532635 36533611 + 0 NA Intergenic Intergenic 43932 ENSMUSG00000039620.17 ENSMUSG00000039620 ENSMUST00000125492 Trmt9b protein_coding Interval_87517 chr19 53185459 53185926 + 0 NA intron (ENSMUSG00000025026.15, intron 1 of 14) protein_coding-intron (ENSMUSG00000025026.15, intron 1 of 15) -25829 ENSMUSG00000088855.1 ENSMUSG00000088855 ENSMUST00000158230 Gm24724 snRNA Interval_168475 chr9 81663969 81664329 + 0 NA Intergenic Intergenic -13463 ENSMUSG00000079225.3 ENSMUSG00000079225 ENSMUST00000183511 Gm9531 transcribed_processed_pseudogene Interval_106796 chr3 100906762 100907499 + 0 NA Intergenic Intergenic -15782 ENSMUSG00000033233.17 ENSMUSG00000033233 ENSMUST00000134993 Trim45 protein_coding Interval_144173 chr7 19796336 19797631 + 0 NA promoter-TSS (ENSMUSG00000040525.13) protein_coding-promoter-TSS (ENSMUSG00000040525.13) -11543 ENSMUSG00000040525.13 ENSMUSG00000040525 ENSMUST00000131602 Cblc protein_coding Interval_98671 chr2 154158450 154158690 + 0 NA Intergenic Intergenic -4037 ENSMUSG00000027484.2 ENSMUSG00000027484 ENSMUST00000028986 Bpifa5 protein_coding Interval_106573 chr3 97376227 97376480 + 0 NA Intergenic Intergenic 45667 ENSMUSG00000051392.5 ENSMUSG00000051392 ENSMUST00000060912 Olfr1402 protein_coding Interval_77355 chr17 88166072 88166731 + 0 NA Intergenic Intergenic -2086 ENSMUSG00000117369.1 ENSMUSG00000117369 ENSMUST00000233989 Gm31499 lincRNA Interval_8919 chr1 152186946 152187162 + 0 NA Intergenic Intergenic 58469 ENSMUSG00000102090.1 ENSMUSG00000102090 ENSMUST00000165944 Gm8964 processed_pseudogene Interval_116505 chr4 114843092 114844069 + 0 NA intron (ENSMUSG00000055198.3, intron 2 of 3) protein_coding-intron (ENSMUSG00000055198.3, intron 2 of 3) 1537 ENSMUSG00000087923.1 ENSMUSG00000087923 ENSMUST00000157298 Gm23230 snRNA Interval_81238 chr18 56683976 56684265 + 0 NA Intergenic Intergenic 16342 ENSMUSG00000118275.1 ENSMUSG00000118275 ENSMUST00000235398 Gm50289 processed_pseudogene Interval_69522 chr16 94019559 94020024 + 0 NA Intergenic Intergenic 3849 ENSMUSG00000116939.1 ENSMUSG00000116939 ENSMUST00000232441 Gm49619 processed_pseudogene Interval_170096 chr9 104407913 104409213 + 0 NA Intergenic Intergenic -17550 ENSMUSG00000089406.1 ENSMUSG00000089406 ENSMUST00000158781 Mir2136 miRNA Interval_28557 chr11 76699813 76700725 + 0 NA Intergenic Intergenic 20461 ENSMUSG00000046275.2 ENSMUSG00000046275 ENSMUST00000062024 Trarg1 protein_coding Interval_14284 chr10 30388534 30390024 + 0 NA Intergenic Intergenic 16361 ENSMUSG00000111047.1 ENSMUSG00000111047 ENSMUST00000213206 Gm4780 transcribed_processed_pseudogene Interval_44330 chr13 43722624 43723928 + 0 NA Intergenic Intergenic 6485 ENSMUSG00000110016.1 ENSMUSG00000110016 ENSMUST00000210260 Gm20751 lincRNA Interval_149761 chr7 101320676 101322087 + 0 NA promoter-TSS (ENSMUSG00000030688.15) protein_coding-promoter-TSS (ENSMUSG00000030688.15) -72 ENSMUSG00000030688.15 ENSMUSG00000030688 ENSMUST00000174140 Stard10 protein_coding Interval_56022 chr14 104534423 104534691 + 0 NA Intergenic Intergenic -11924 ENSMUSG00000022120.4 ENSMUSG00000022120 ENSMUST00000228210 Rnf219 protein_coding Interval_11352 chr1 181170261 181171028 + 0 NA Intergenic Intergenic 25951 ENSMUSG00000062169.13 ENSMUSG00000062169 ENSMUST00000111057 Cnih4 protein_coding Interval_163902 chr9 28079673 28079875 + 0 NA intron (ENSMUSG00000062257.13, intron 1 of 7) protein_coding-intron (ENSMUSG00000062257.13, intron 1 of 7) -118166 ENSMUSG00000087531.7 ENSMUSG00000087531 ENSMUST00000139851 Gm15606 sense_intronic Interval_65556 chr16 23288157 23289075 + 0 NA intron (ENSMUSG00000022885.16, intron 1 of 2) protein_coding-intron (ENSMUSG00000022885.16, intron 2 of 7) 62595 ENSMUSG00000022885.16 ENSMUSG00000022885 ENSMUST00000115335 St6gal1 protein_coding Interval_165801 chr9 53260795 53261074 + 0 NA Intergenic Intergenic -3681 ENSMUSG00000032048.3 ENSMUSG00000032048 ENSMUST00000034550 4930510E17Rik lincRNA Interval_142491 chr6 142835737 142836054 + 0 NA intron (ENSMUSG00000030283.7, intron 4 of 4) protein_coding-intron (ENSMUSG00000030283.7, intron 4 of 4) 21510 ENSMUSG00000072683.3 ENSMUSG00000072683 ENSMUST00000159599 Gm7457 processed_transcript Interval_78099 chr18 8072394 8073207 + 0 NA Intergenic Intergenic 21597 ENSMUSG00000117428.1 ENSMUSG00000117428 ENSMUST00000235002 Gm4833 processed_pseudogene Interval_162455 chr8 128948660 128949511 + 0 NA intron (ENSMUSG00000025808.17, intron 18 of 55) protein_coding-intron (ENSMUSG00000025808.17, intron 18 of 55) -68805 ENSMUSG00000077538.1 ENSMUSG00000077538 ENSMUST00000104350 Gm22545 snoRNA Interval_166798 chr9 62777244 62778075 + 0 NA TTS (ENSMUSG00000032243.8) protein_coding-TTS (ENSMUSG00000032243.8) -12245 ENSMUSG00000111537.1 ENSMUSG00000111537 ENSMUST00000214567 Gm7653 processed_pseudogene Interval_27621 chr11 69088156 69089503 + 0 NA promoter-TSS (ENSMUSG00000020894.16) protein_coding-promoter-TSS (ENSMUSG00000020894.16) 307 ENSMUSG00000020894.16 ENSMUSG00000020894 ENSMUST00000146847 Vamp2 protein_coding Interval_153917 chr8 11006860 11009980 + 0 NA promoter-TSS (ENSMUSG00000038894.7) protein_coding-promoter-TSS (ENSMUSG00000038894.7) 38 ENSMUSG00000038894.7 ENSMUSG00000038894 ENSMUST00000040514 Irs2 protein_coding Interval_130251 chr5 125210219 125210641 + 0 NA Intergenic Intergenic 62385 ENSMUSG00000105039.1 ENSMUSG00000105039 ENSMUST00000198586 Gm32585 lincRNA Interval_161898 chr8 123536230 123537376 + 0 NA TTS (ENSMUSG00000040220.10) protein_coding-TTS (ENSMUSG00000040220.10) 2101 ENSMUSG00000094720.1 ENSMUSG00000094720 ENSMUST00000178106 n-R5s100 rRNA Interval_45454 chr13 55246864 55247966 + 0 NA exon (ENSMUSG00000021488.8, exon 5 of 23) protein_coding-exon (ENSMUSG00000021488.8, exon 5 of 23) 6986 ENSMUSG00000114359.1 ENSMUSG00000114359 ENSMUST00000224833 Gm47816 processed_pseudogene Interval_164168 chr9 32134399 32134729 + 0 NA intron (ENSMUSG00000041444.14, intron 1 of 5) protein_coding-intron (ENSMUSG00000041444.14, intron 2 of 21) 40604 ENSMUSG00000111382.1 ENSMUSG00000111382 ENSMUST00000213983 Gm47536 processed_pseudogene Interval_102421 chr3 25164003 25164563 + 0 NA Intergenic Intergenic -20022 ENSMUSG00000102758.3 ENSMUSG00000102758 ENSMUST00000204227 Naaladl2 protein_coding Interval_68070 chr16 64842524 64843096 + 0 NA intron (ENSMUSG00000047141.5, intron 1 of 8) protein_coding-intron (ENSMUSG00000047141.5, intron 1 of 8) 8842 ENSMUSG00000047141.5 ENSMUSG00000047141 ENSMUST00000052588 Zfp654 protein_coding Interval_9899 chr1 163948886 163949154 + 0 NA intron (ENSMUSG00000041406.14, intron 24 of 24) protein_coding-intron (ENSMUSG00000026584.14, intron 10 of 13) 19230 ENSMUSG00000026584.14 ENSMUSG00000026584 ENSMUST00000162920 Scyl3 protein_coding Interval_166451 chr9 59588982 59589265 + 0 NA promoter-TSS (ENSMUSG00000032297.11) protein_coding-promoter-TSS (ENSMUSG00000032297.11) -13535 ENSMUSG00000032297.11 ENSMUSG00000032297 ENSMUST00000129728 Celf6 protein_coding Interval_73653 chr17 42467094 42467560 + 0 NA intron (ENSMUSG00000042256.5, intron 2 of 2) protein_coding-intron (ENSMUSG00000042256.5, intron 3 of 3) 144068 ENSMUSG00000043972.8 ENSMUSG00000043972 ENSMUST00000068355 Opn5 protein_coding Interval_94980 chr2 102469786 102470478 + 0 NA Intergenic Intergenic -17633 ENSMUSG00000075012.4 ENSMUSG00000075012 ENSMUST00000099678 Fjx1 protein_coding Interval_73820 chr17 44128805 44129399 + 0 NA Intergenic Intergenic -5666 ENSMUSG00000023959.10 ENSMUSG00000023959 ENSMUST00000233193 Clic5 protein_coding Interval_35563 chr12 24837260 24838512 + 0 NA intron (ENSMUSG00000020646.17, intron 1 of 9) protein_coding-intron (ENSMUSG00000020646.17, intron 1 of 9) 6255 ENSMUSG00000020646.17 ENSMUSG00000020646 ENSMUST00000222994 Mboat2 protein_coding Interval_1354 chr1 20920852 20921509 + 0 NA intron (ENSMUSG00000025931.15, intron 1 of 2) protein_coding-intron (ENSMUSG00000025931.15, intron 1 of 2) -5640 ENSMUSG00000077314.1 ENSMUSG00000077314 ENSMUST00000104126 Gm24171 snoRNA Interval_129247 chr5 118425456 118425795 + 0 NA Intergenic Intergenic -6807 ENSMUSG00000093041.1 ENSMUSG00000093041 ENSMUST00000175300 Gm26455 miRNA Interval_156068 chr8 43333512 43334632 + 0 NA Intergenic Intergenic -27136 ENSMUSG00000051176.6 ENSMUSG00000051176 ENSMUST00000082120 Zfp42 protein_coding Interval_117330 chr4 123016367 123016955 + 0 NA promoter-TSS (ENSMUSG00000028653.16) protein_coding-promoter-TSS (ENSMUSG00000028653.16) 64 ENSMUSG00000028653.16 ENSMUSG00000028653 ENSMUST00000141855 Trit1 protein_coding Interval_6603 chr1 118202633 118203058 + 0 NA TTS (ENSMUSG00000102030.1) protein_coding-TTS (ENSMUSG00000102030.1) 26303 ENSMUSG00000102030.1 ENSMUSG00000102030 ENSMUST00000186264 Gm29106 protein_coding Interval_150616 chr7 112827796 112829143 + 0 NA intron (ENSMUSG00000055320.18, intron 2 of 13) protein_coding-intron (ENSMUSG00000055320.18, intron 2 of 13) 114518 ENSMUSG00000106046.1 ENSMUSG00000106046 ENSMUST00000199696 Gm44462 miRNA Interval_140350 chr6 116946795 116947198 + 0 NA Intergenic Intergenic -6523 ENSMUSG00000108225.1 ENSMUSG00000108225 ENSMUST00000203978 Gm43926 processed_pseudogene Interval_115281 chr4 95188399 95189102 + 0 NA Intergenic Intergenic -4563 ENSMUSG00000084918.1 ENSMUSG00000084918 ENSMUST00000126143 Gm12708 lincRNA Interval_12428 chr1 193376242 193377106 + 0 NA Intergenic Intergenic -6449 ENSMUSG00000016179.11 ENSMUSG00000016179 ENSMUST00000165718 Camk1g protein_coding Interval_169322 chr9 96384037 96385411 + 0 NA Intergenic Intergenic -41143 ENSMUSG00000032412.8 ENSMUSG00000032412 ENSMUST00000187341 Atp1b3 protein_coding Interval_3312 chr1 56714088 56715488 + 0 NA Intergenic Intergenic -77353 ENSMUSG00000045336.5 ENSMUSG00000045336 ENSMUST00000062085 Hsfy2 protein_coding Interval_16030 chr10 60212850 60213855 + 0 NA intron (ENSMUSG00000057337.13, intron 1 of 3) protein_coding-intron (ENSMUSG00000057337.13, intron 1 of 3) -2101 ENSMUSG00000077090.1 ENSMUSG00000077090 ENSMUST00000103902 Gm22117 miRNA Interval_129482 chr5 120482943 120484294 + 0 NA exon (ENSMUSG00000029598.12, exon 12 of 12) protein_coding-exon (ENSMUSG00000029598.12, exon 12 of 12) -2715 ENSMUSG00000086165.1 ENSMUSG00000086165 ENSMUST00000128728 Gm15690 antisense Interval_18271 chr10 84501322 84501515 + 0 NA TTS (ENSMUSG00000111478.1) processed_pseudogene-TTS (ENSMUSG00000111478.1) 851 ENSMUSG00000111478.1 ENSMUSG00000111478 ENSMUST00000214798 Gm18251 processed_pseudogene Interval_101265 chr2 179974918 179977354 + 0 NA promoter-TSS (ENSMUSG00000085704.1) processed_transcript-promoter-TSS (ENSMUSG00000085704.1) 143 ENSMUSG00000085704.1 ENSMUSG00000085704 ENSMUST00000150145 4921531C22Rik processed_transcript Interval_26990 chr11 62214900 62215612 + 0 NA intron (ENSMUSG00000042331.13, intron 14 of 14) protein_coding-intron (ENSMUSG00000042331.13, intron 12 of 12) -33728 ENSMUSG00000018500.2 ENSMUSG00000018500 ENSMUST00000018644 Adora2b protein_coding Interval_69406 chr16 92920490 92920929 + 0 NA Intergenic Intergenic 58832 ENSMUSG00000116805.1 ENSMUSG00000116805 ENSMUST00000231501 Gm49723 lincRNA Interval_158213 chr8 79874011 79874316 + 0 NA Intergenic Intergenic -10084 ENSMUSG00000110188.1 ENSMUSG00000110188 ENSMUST00000210391 Gm45432 processed_pseudogene Interval_38113 chr12 75711255 75713676 + 0 NA Intergenic Intergenic 23231 ENSMUSG00000021054.6 ENSMUSG00000021054 ENSMUST00000220285 Sgpp1 protein_coding Interval_65227 chr16 20688193 20688612 + 0 NA promoter-TSS (ENSMUSG00000045983.16) protein_coding-promoter-TSS (ENSMUSG00000045983.16) 4163 ENSMUSG00000077239.1 ENSMUSG00000077239 ENSMUST00000104051 Snord66 snoRNA Interval_71198 chr17 21090396 21090741 + 0 NA promoter-TSS (ENSMUSG00000102080.2) lincRNA-promoter-TSS (ENSMUSG00000102080.2) -2604 ENSMUSG00000091550.1 ENSMUSG00000091550 ENSMUST00000169389 Gm6811 unprocessed_pseudogene Interval_99742 chr2 164617182 164617661 + 0 NA exon (ENSMUSG00000070531.4, exon 3 of 4) protein_coding-exon (ENSMUSG00000070531.4, exon 3 of 4) 3899 ENSMUSG00000070531.4 ENSMUSG00000070531 ENSMUST00000094346 Wfdc6b protein_coding Interval_12362 chr1 192578002 192578200 + 0 NA intron (ENSMUSG00000037375.16, intron 10 of 11) protein_coding-intron (ENSMUSG00000037375.16, intron 10 of 11) 143361 ENSMUSG00000058248.12 ENSMUSG00000058248 ENSMUST00000151152 Kcnh1 protein_coding Interval_50702 chr14 18353949 18354130 + 0 NA Intergenic Intergenic -22295 ENSMUSG00000021774.13 ENSMUSG00000021774 ENSMUST00000161580 Ube2e1 protein_coding Interval_162011 chr8 124403883 124404942 + 0 NA intron (ENSMUSG00000050751.14, intron 1 of 6) protein_coding-intron (ENSMUSG00000050751.14, intron 1 of 6) 35246 ENSMUSG00000050751.14 ENSMUSG00000050751 ENSMUST00000140126 Pgbd5 protein_coding Interval_78872 chr18 21071035 21071339 + 0 NA intron (ENSMUSG00000024313.8, intron 3 of 6) protein_coding-intron (ENSMUSG00000024313.8, intron 3 of 6) -1157 ENSMUSG00000024313.8 ENSMUSG00000024313 ENSMUST00000082235 Mep1b protein_coding Interval_141874 chr6 135052006 135052885 + 0 NA Intergenic Intergenic -13206 ENSMUSG00000046733.7 ENSMUSG00000046733 ENSMUST00000050104 Gprc5a protein_coding Interval_16326 chr10 62251709 62253217 + 0 NA promoter-TSS (ENSMUSG00000020081.5) protein_coding-promoter-TSS (ENSMUSG00000020081.5) 25 ENSMUSG00000020081.5 ENSMUSG00000020081 ENSMUST00000020278 Tacr2 protein_coding Interval_142942 chr6 147175080 147175554 + 0 NA TTS (ENSMUSG00000080760.1) processed_pseudogene-TTS (ENSMUSG00000080760.1) 1836 ENSMUSG00000080760.1 ENSMUSG00000080760 ENSMUST00000120252 Gm7571 processed_pseudogene Interval_88803 chr2 11287969 11289095 + 0 NA intron (ENSMUSG00000026778.13, intron 14 of 15) protein_coding-intron (ENSMUSG00000026778.13, intron 15 of 17) 31342 ENSMUSG00000102196.1 ENSMUSG00000102196 ENSMUST00000195716 Gm38171 lincRNA Interval_91225 chr2 36077030 36077883 + 0 NA intron (ENSMUSG00000026894.4, intron 4 of 4) protein_coding-intron (ENSMUSG00000026894.4, intron 4 of 4) -8167 ENSMUSG00000107351.1 ENSMUSG00000107351 ENSMUST00000202553 Gm43764 TEC Interval_147006 chr7 57966051 57966454 + 0 NA Intergenic Intergenic -38953 ENSMUSG00000077784.1 ENSMUSG00000077784 ENSMUST00000104596 Gm23911 snoRNA Interval_81248 chr18 56743957 56745454 + 0 NA intron (ENSMUSG00000024590.8, intron 8 of 10) protein_coding-intron (ENSMUSG00000024590.8, intron 8 of 10) 16264 ENSMUSG00000024590.8 ENSMUSG00000024590 ENSMUST00000128651 Lmnb1 protein_coding Interval_89989 chr2 27112365 27112896 + 0 NA exon (ENSMUSG00000009216.7, exon 3 of 3) protein_coding-exon (ENSMUSG00000009216.7, exon 3 of 3) 15334 ENSMUSG00000036040.14 ENSMUSG00000036040 ENSMUST00000139633 Adamtsl2 protein_coding Interval_153074 chr7 141187884 141188189 + 0 NA Intergenic Intergenic 5968 ENSMUSG00000025499.18 ENSMUSG00000025499 ENSMUST00000124971 Hras protein_coding Interval_95048 chr2 103458918 103459978 + 0 NA intron (ENSMUSG00000027187.10, intron 10 of 12) protein_coding-intron (ENSMUSG00000027187.10, intron 10 of 12) 25677 ENSMUSG00000027187.10 ENSMUSG00000027187 ENSMUST00000111168 Cat protein_coding Interval_68413 chr16 76196803 76197769 + 0 NA Intergenic Intergenic 52301 ENSMUSG00000098089.2 ENSMUSG00000098089 ENSMUST00000183080 Gm26915 processed_pseudogene Interval_8845 chr1 151490175 151490412 + 0 NA intron (ENSMUSG00000026484.13, intron 1 of 7) protein_coding-intron (ENSMUSG00000026484.13, intron 1 of 6) 9292 ENSMUSG00000103238.1 ENSMUSG00000103238 ENSMUST00000195500 Gm36527 TEC Interval_165100 chr9 44578184 44578517 + 0 NA Intergenic Intergenic -1277 ENSMUSG00000111378.1 ENSMUSG00000111378 ENSMUST00000215946 Gm47230 lincRNA Interval_124724 chr5 53567178 53567843 + 0 NA intron (ENSMUSG00000039191.12, intron 2 of 6) protein_coding-intron (ENSMUSG00000039191.12, intron 1 of 10) -20188 ENSMUSG00000107111.1 ENSMUSG00000107111 ENSMUST00000202154 Gm40304 antisense Interval_92909 chr2 68376747 68377596 + 0 NA intron (ENSMUSG00000027030.15, intron 5 of 15) protein_coding-intron (ENSMUSG00000027030.15, intron 5 of 17) 9510 ENSMUSG00000027030.15 ENSMUSG00000027030 ENSMUST00000149581 Stk39 protein_coding Interval_110698 chr4 6555616 6556323 + 0 NA Intergenic Intergenic 16408 ENSMUSG00000081388.1 ENSMUSG00000081388 ENSMUST00000117807 Gm11801 processed_pseudogene Interval_17663 chr10 78632193 78632486 + 0 NA intron (ENSMUSG00000112674.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000112674.1, intron 1 of 1) -2039 ENSMUSG00000112017.1 ENSMUSG00000112017 ENSMUST00000217691 Gm7842 processed_pseudogene Interval_163873 chr9 27355133 27355585 + 0 NA exon (ENSMUSG00000034275.18, exon 20 of 20) protein_coding-exon (ENSMUSG00000034275.18, exon 20 of 20) -30908 ENSMUSG00000110920.1 ENSMUSG00000110920 ENSMUST00000215351 Gm48858 processed_pseudogene Interval_44657 chr13 46966103 46967159 + 0 NA Intergenic Intergenic -14089 ENSMUSG00000089131.1 ENSMUSG00000089131 ENSMUST00000158506 Gm24769 snoRNA Interval_126403 chr5 88061345 88062068 + 0 NA promoter-TSS (ENSMUSG00000105905.1) processed_pseudogene-promoter-TSS (ENSMUSG00000105905.1) -810 ENSMUSG00000105905.1 ENSMUSG00000105905 ENSMUST00000199391 Gm7709 processed_pseudogene Interval_148017 chr7 78161418 78161928 + 0 NA Intergenic Intergenic 51026 ENSMUSG00000108630.1 ENSMUSG00000108630 ENSMUST00000205611 Gm44607 TEC Interval_51521 chr14 29695872 29696768 + 0 NA intron (ENSMUSG00000021991.9, intron 2 of 37) protein_coding-intron (ENSMUSG00000021991.9, intron 2 of 37) 37075 ENSMUSG00000114570.1 ENSMUSG00000114570 ENSMUST00000225976 Gm48058 lincRNA Interval_139451 chr6 100270702 100271638 + 0 NA intron (ENSMUSG00000072872.3, intron 1 of 1) protein_coding-intron (ENSMUSG00000072872.3, intron 2 of 4) 2528 ENSMUSG00000107690.1 ENSMUSG00000107690 ENSMUST00000205178 Gm44044 TEC Interval_62335 chr15 90318373 90318844 + 0 NA Intergenic Intergenic -35098 ENSMUSG00000116204.1 ENSMUSG00000116204 ENSMUST00000229899 Gm36480 lincRNA Interval_167413 chr9 68866008 68866215 + 0 NA intron (ENSMUSG00000032238.17, intron 1 of 5) protein_coding-intron (ENSMUSG00000032238.17, intron 1 of 10) 212220 ENSMUSG00000032238.17 ENSMUSG00000032238 ENSMUST00000113624 Rora protein_coding Interval_147141 chr7 63795764 63796771 + 0 NA Intergenic Intergenic 15063 ENSMUSG00000108700.1 ENSMUSG00000108700 ENSMUST00000206446 Gm7482 processed_pseudogene Interval_139098 chr6 95098258 95099003 + 0 NA Intergenic Intergenic 1677 ENSMUSG00000093999.1 ENSMUSG00000093999 ENSMUST00000178307 Gm26501 snRNA Interval_140104 chr6 114238402 114238655 + 0 NA intron (ENSMUSG00000030307.8, intron 10 of 13) protein_coding-intron (ENSMUSG00000030307.8, intron 10 of 13) -44262 ENSMUSG00000030310.10 ENSMUSG00000030310 ENSMUST00000204540 Slc6a1 protein_coding Interval_74406 chr17 49981233 49981750 + 0 NA TTS (ENSMUSG00000118535.1) unitary_pseudogene-TTS (ENSMUSG00000118535.1) 8664 ENSMUSG00000118535.1 ENSMUSG00000118535 ENSMUST00000239097 AC133946.1 unitary_pseudogene Interval_15929 chr10 59400411 59401060 + 0 NA Intergenic Intergenic 4980 ENSMUSG00000069622.5 ENSMUSG00000069622 ENSMUST00000092511 Gm10273 processed_pseudogene Interval_2028 chr1 35982405 35982686 + 0 NA intron (ENSMUSG00000102279.1, intron 2 of 2) lincRNA-intron (ENSMUSG00000102279.1, intron 2 of 2) 3828 ENSMUSG00000102279.1 ENSMUSG00000102279 ENSMUST00000192572 Gm37146 lincRNA Interval_67365 chr16 48073552 48074200 + 0 NA exon (ENSMUSG00000067716.3, exon 1 of 1) processed_pseudogene-exon (ENSMUSG00000067716.3, exon 1 of 1) 879 ENSMUSG00000067716.3 ENSMUSG00000067716 ENSMUST00000088296 Gm7275 processed_pseudogene Interval_64724 chr16 14476074 14476777 + 0 NA TTS (ENSMUSG00000023088.17) protein_coding-TTS (ENSMUSG00000023088.17) 7321 ENSMUSG00000116439.1 ENSMUSG00000116439 ENSMUST00000231182 Gm49528 unprocessed_pseudogene Interval_122199 chr5 19366493 19366758 + 0 NA intron (ENSMUSG00000040003.18, intron 1 of 2) protein_coding-intron (ENSMUSG00000040003.18, intron 1 of 22) 139498 ENSMUSG00000106204.1 ENSMUSG00000106204 ENSMUST00000197169 Gm21009 processed_pseudogene Interval_155526 chr8 34107804 34109029 + 0 NA promoter-TSS (ENSMUSG00000031516.11) protein_coding-promoter-TSS (ENSMUSG00000031516.11) 3321 ENSMUSG00000063412.4 ENSMUSG00000063412 ENSMUST00000080152 Gm10131 protein_coding Interval_157355 chr8 69821636 69824268 + 0 NA intron (ENSMUSG00000031861.16, intron 1 of 1) protein_coding-intron (ENSMUSG00000031861.16, intron 1 of 2) 368 ENSMUSG00000031861.16 ENSMUSG00000031861 ENSMUST00000238452 Lpar2 protein_coding Interval_107608 chr3 108865119 108865880 + 0 NA intron (ENSMUSG00000045326.13, intron 9 of 12) protein_coding-intron (ENSMUSG00000045326.13, intron 8 of 11) -16324 ENSMUSG00000105175.1 ENSMUSG00000105175 ENSMUST00000196867 Gm43097 processed_pseudogene Interval_89988 chr2 27109438 27109648 + 0 NA TTS (ENSMUSG00000036040.14) protein_coding-TTS (ENSMUSG00000036040.14) 12247 ENSMUSG00000036040.14 ENSMUSG00000036040 ENSMUST00000139633 Adamtsl2 protein_coding Interval_102960 chr3 33799503 33800708 + 0 NA promoter-TSS (ENSMUSG00000027677.17) protein_coding-promoter-TSS (ENSMUSG00000027677.17) -78 ENSMUSG00000027677.17 ENSMUSG00000027677 ENSMUST00000197592 Ttc14 protein_coding Interval_159893 chr8 104803104 104803517 + 0 NA Intergenic Intergenic 8073 ENSMUSG00000069925.6 ENSMUSG00000069925 ENSMUST00000212453 4932416K20Rik lincRNA Interval_68456 chr16 77053273 77054181 + 0 NA intron (ENSMUSG00000022867.11, intron 5 of 25) protein_coding-intron (ENSMUSG00000022867.11, intron 5 of 23) 40021 ENSMUSG00000022867.11 ENSMUSG00000022867 ENSMUST00000232351 Usp25 protein_coding Interval_88267 chr2 3110361 3110548 + 0 NA Intergenic Intergenic -7928 ENSMUSG00000050530.14 ENSMUSG00000050530 ENSMUST00000062934 Fam171a1 protein_coding Interval_52711 chr14 48847217 48847443 + 0 NA intron (ENSMUSG00000098682.8, intron 3 of 3) lincRNA-intron (ENSMUSG00000098682.8, intron 3 of 3) -12796 ENSMUSG00000115380.1 ENSMUSG00000115380 ENSMUST00000226725 Gm46453 processed_pseudogene Interval_172143 chrX 7967698 7968213 + 0 NA promoter-TSS (ENSMUSG00000031162.14) protein_coding-promoter-TSS (ENSMUSG00000031162.14) -3789 ENSMUSG00000031162.14 ENSMUSG00000031162 ENSMUST00000128449 Gata1 protein_coding Interval_127881 chr5 108549420 108550786 + 0 NA promoter-TSS (ENSMUSG00000033615.9) protein_coding-promoter-TSS (ENSMUSG00000033615.9) -103 ENSMUSG00000033615.9 ENSMUSG00000033615 ENSMUST00000129040 Cplx1 protein_coding Interval_160089 chr8 106299624 106300010 + 0 NA exon (ENSMUSG00000074113.4, exon 2 of 2) lincRNA-exon (ENSMUSG00000074113.4, exon 2 of 2) 16510 ENSMUSG00000074113.4 ENSMUSG00000074113 ENSMUST00000137706 Gm10629 lincRNA Interval_124677 chr5 53153171 53153537 + 0 NA TTS (ENSMUSG00000029189.10) protein_coding-TTS (ENSMUSG00000029189.10) 10194 ENSMUSG00000077316.1 ENSMUSG00000077316 ENSMUST00000104128 n-R5s171 rRNA Interval_38853 chr12 83424044 83424304 + 0 NA intron (ENSMUSG00000021221.15, intron 1 of 10) protein_coding-intron (ENSMUSG00000021221.15, intron 1 of 8) 63542 ENSMUSG00000021221.15 ENSMUSG00000021221 ENSMUST00000177801 Dpf3 protein_coding Interval_153647 chr8 4258209 4259622 + 0 NA TTS (ENSMUSG00000002949.15) protein_coding-TTS (ENSMUSG00000002949.15) 359 ENSMUSG00000048644.8 ENSMUSG00000048644 ENSMUST00000053252 Ctxn1 protein_coding Interval_125738 chr5 73694599 73694947 + 0 NA Intergenic Intergenic 35512 ENSMUSG00000029155.16 ENSMUSG00000029155 ENSMUST00000178631 Spata18 protein_coding Interval_20411 chr10 117398033 117398428 + 0 NA exon (ENSMUSG00000112728.1, exon 2 of 2) lincRNA-exon (ENSMUSG00000112728.1, exon 2 of 2) 8208 ENSMUSG00000112728.1 ENSMUSG00000112728 ENSMUST00000219525 Gm48903 lincRNA Interval_84718 chr19 15923723 15925781 + 0 NA promoter-TSS (ENSMUSG00000024640.9) protein_coding-promoter-TSS (ENSMUSG00000024640.9) -18858 ENSMUSG00000090147.1 ENSMUSG00000090147 ENSMUST00000159873 Gm3329 processed_pseudogene Interval_17938 chr10 80911722 80911976 + 0 NA intron (ENSMUSG00000062075.13, intron 1 of 11) protein_coding-intron (ENSMUSG00000062075.13, intron 1 of 11) 6396 ENSMUSG00000062075.13 ENSMUSG00000062075 ENSMUST00000159094 Lmnb2 protein_coding Interval_120607 chr4 149659426 149660699 + 0 NA TTS (ENSMUSG00000039936.18) protein_coding-TTS (ENSMUSG00000039936.18) -4495 ENSMUSG00000098580.1 ENSMUSG00000098580 ENSMUST00000185093 Mir7023 miRNA Interval_135075 chr6 35192645 35193597 + 0 NA intron (ENSMUSG00000038759.15, intron 7 of 14) protein_coding-intron (ENSMUSG00000038759.15, intron 7 of 42) 15505 ENSMUSG00000038759.15 ENSMUSG00000038759 ENSMUST00000200739 Nup205 protein_coding Interval_51351 chr14 26915441 26916147 + 0 NA TTS (ENSMUSG00000021898.16) protein_coding-TTS (ENSMUSG00000021898.16) -10661 ENSMUSG00000114785.1 ENSMUSG00000114785 ENSMUST00000223843 Gm41115 processed_pseudogene Interval_166625 chr9 61368489 61371206 + 0 NA TTS (ENSMUSG00000074256.3) lincRNA-TTS (ENSMUSG00000074256.3) 1780 ENSMUSG00000074256.3 ENSMUSG00000074256 ENSMUST00000187131 Gm10655 lincRNA Interval_145489 chr7 35163680 35164539 + 0 NA Intergenic Intergenic -22373 ENSMUSG00000030495.12 ENSMUSG00000030495 ENSMUST00000146959 Slc7a10 protein_coding Interval_158840 chr8 87121225 87121612 + 0 NA intron (ENSMUSG00000098684.1, intron 2 of 7) lincRNA-intron (ENSMUSG00000098684.1, intron 2 of 7) 6773 ENSMUSG00000098684.1 ENSMUSG00000098684 ENSMUST00000183611 Gm27246 lincRNA Interval_151111 chr7 118597118 118597847 + 0 NA TTS (ENSMUSG00000109284.1) lincRNA-TTS (ENSMUSG00000109284.1) 5139 ENSMUSG00000109284.1 ENSMUSG00000109284 ENSMUST00000207147 B230311B06Rik lincRNA Interval_91575 chr2 43732255 43732815 + 0 NA Intergenic Intergenic -16334 ENSMUSG00000049744.15 ENSMUSG00000049744 ENSMUST00000128630 Arhgap15 protein_coding Interval_164133 chr9 31856266 31856767 + 0 NA intron (ENSMUSG00000032033.11, intron 2 of 3) protein_coding-intron (ENSMUSG00000032033.11, intron 2 of 3) -49477 ENSMUSG00000110813.1 ENSMUSG00000110813 ENSMUST00000216981 Gm31497 antisense Interval_162220 chr8 126096173 126096405 + 0 NA Intergenic Intergenic -35765 ENSMUSG00000110437.1 ENSMUSG00000110437 ENSMUST00000212698 Gm45876 TEC Interval_148208 chr7 79846566 79848768 + 0 NA intron (ENSMUSG00000039062.15, intron 1 of 2) protein_coding-intron (ENSMUSG00000039062.15, intron 1 of 20) -15796 ENSMUSG00000108476.1 ENSMUSG00000108476 ENSMUST00000206387 Gm44974 TEC Interval_2670 chr1 43141039 43141304 + 0 NA intron (ENSMUSG00000008136.14, intron 2 of 2) protein_coding-intron (ENSMUSG00000008136.14, intron 3 of 5) 42461 ENSMUSG00000010290.7 ENSMUSG00000010290 ENSMUST00000010434 AI597479 protein_coding Interval_5227 chr1 86571751 86572148 + 0 NA intron (ENSMUSG00000026239.14, intron 1 of 4) protein_coding-intron (ENSMUSG00000026239.14, intron 1 of 4) -8109 ENSMUSG00000102927.1 ENSMUSG00000102927 ENSMUST00000193369 Gm37152 TEC Interval_121492 chr4 156166566 156166923 + 0 NA intron (ENSMUSG00000041936.18, intron 35 of 35) protein_coding-intron (ENSMUSG00000041936.18, intron 21 of 21) 19363 ENSMUSG00000041936.18 ENSMUSG00000041936 ENSMUST00000144749 Agrn protein_coding Interval_33640 chr11 117693812 117694452 + 0 NA intron (ENSMUSG00000025571.13, intron 1 of 21) protein_coding-intron (ENSMUSG00000025571.13, intron 1 of 21) -55099 ENSMUSG00000025571.13 ENSMUSG00000025571 ENSMUST00000141287 Tnrc6c protein_coding Interval_46300 chr13 63530270 63531080 + 0 NA intron (ENSMUSG00000021466.12, intron 13 of 21) protein_coding-intron (ENSMUSG00000021466.12, intron 15 of 22) 9003 ENSMUSG00000021466.12 ENSMUSG00000021466 ENSMUST00000220588 Ptch1 protein_coding Interval_53934 chr14 63494848 63495138 + 0 NA TTS (ENSMUSG00000021953.14) protein_coding-TTS (ENSMUSG00000021953.14) 1294 ENSMUSG00000090374.1 ENSMUSG00000090374 ENSMUST00000164515 Gm17232 antisense Interval_4263 chr1 72236213 72237859 + 0 NA promoter-TSS (ENSMUSG00000094050.1) snRNA-promoter-TSS (ENSMUSG00000094050.1) 90 ENSMUSG00000094050.1 ENSMUSG00000094050 ENSMUST00000101806 Gm23472 snRNA Interval_172547 chrX 36534311 36534781 + 0 NA Intergenic Intergenic -42716 ENSMUSG00000091556.8 ENSMUSG00000091556 ENSMUST00000167210 Gm14569 protein_coding Interval_102003 chr3 14856082 14856407 + 0 NA Intergenic Intergenic -12934 ENSMUSG00000027559.5 ENSMUSG00000027559 ENSMUST00000195834 Car3 protein_coding Interval_35486 chr12 22985933 22986196 + 0 NA intron (ENSMUSG00000073164.11, intron 3 of 4) lincRNA-intron (ENSMUSG00000073164.11, intron 3 of 4) -12291 ENSMUSG00000113289.1 ENSMUSG00000113289 ENSMUST00000221861 Gm48044 processed_pseudogene Interval_126513 chr5 89444092 89444945 + 0 NA intron (ENSMUSG00000035540.12, intron 3 of 12) protein_coding-intron (ENSMUSG00000035540.12, intron 3 of 12) -8890 ENSMUSG00000035540.12 ENSMUSG00000035540 ENSMUST00000200534 Gc protein_coding Interval_121100 chr4 153030482 153030970 + 0 NA Intergenic Intergenic -17142 ENSMUSG00000080360.1 ENSMUSG00000080360 ENSMUST00000116710 Gm25779 miRNA Interval_29532 chr11 84723835 84724445 + 0 NA Intergenic Intergenic -3708 ENSMUSG00000085044.1 ENSMUSG00000085044 ENSMUST00000150735 1700109G15Rik lincRNA Interval_152825 chr7 138428729 138429014 + 0 NA Intergenic Intergenic 15094 ENSMUSG00000110354.1 ENSMUSG00000110354 ENSMUST00000211580 Gm45686 lincRNA Interval_472 chr1 6061519 6062142 + 0 NA Intergenic Intergenic -11785 ENSMUSG00000103090.1 ENSMUSG00000103090 ENSMUST00000191956 Gm19214 processed_pseudogene Interval_90520 chr2 30926974 30929917 + 0 NA intron (ENSMUSG00000050737.13, intron 1 of 2) protein_coding-intron (ENSMUSG00000050737.13, intron 1 of 2) 1418 ENSMUSG00000050737.13 ENSMUSG00000050737 ENSMUST00000126588 Ptges protein_coding Interval_19942 chr10 111416391 111417527 + 0 NA Intergenic Intergenic -56268 ENSMUSG00000058799.16 ENSMUSG00000058799 ENSMUST00000219718 Nap1l1 protein_coding Interval_39632 chr12 91682684 91684790 + 0 NA promoter-TSS (ENSMUSG00000086689.1) antisense-promoter-TSS (ENSMUSG00000086689.1) -928 ENSMUSG00000086689.1 ENSMUSG00000086689 ENSMUST00000151945 Gm16876 antisense Interval_121814 chr5 8445596 8445832 + 0 NA intron (ENSMUSG00000054099.11, intron 1 of 1) protein_coding-intron (ENSMUSG00000054099.11, intron 8 of 11) 22856 ENSMUSG00000054099.11 ENSMUSG00000054099 ENSMUST00000198119 Slc25a40 protein_coding Interval_72742 chr17 31870237 31871624 + 0 NA Intergenic Intergenic -19355 ENSMUSG00000024042.7 ENSMUSG00000024042 ENSMUST00000234142 Sik1 protein_coding Interval_111550 chr4 22841575 22841951 + 0 NA Intergenic Intergenic 94632 ENSMUSG00000088809.1 ENSMUSG00000088809 ENSMUST00000158184 Gm24078 miRNA Interval_106670 chr3 98347760 98349884 + 0 NA Intergenic Intergenic -15252 ENSMUSG00000053398.11 ENSMUSG00000053398 ENSMUST00000148488 Phgdh protein_coding Interval_173611 chrX 100832838 100833120 + 0 NA Intergenic Intergenic 55694 ENSMUSG00000000881.12 ENSMUSG00000000881 ENSMUST00000146772 Dlg3 protein_coding Interval_20407 chr10 117388447 117388641 + 0 NA Intergenic Intergenic -1478 ENSMUSG00000112728.1 ENSMUSG00000112728 ENSMUST00000219525 Gm48903 lincRNA Interval_128209 chr5 111754494 111755829 + 0 NA intron (ENSMUSG00000085271.7, intron 1 of 4) lincRNA-intron (ENSMUSG00000085271.7, intron 1 of 4) 6542 ENSMUSG00000085271.7 ENSMUSG00000085271 ENSMUST00000129146 E130006D01Rik lincRNA Interval_115572 chr4 100912339 100912802 + 0 NA intron (ENSMUSG00000028532.14, intron 3 of 26) protein_coding-intron (ENSMUSG00000028532.14, intron 3 of 26) -82140 ENSMUSG00000028532.14 ENSMUSG00000028532 ENSMUST00000136430 Cachd1 protein_coding Interval_111545 chr4 22770490 22770996 + 0 NA Intergenic Intergenic 23612 ENSMUSG00000088809.1 ENSMUSG00000088809 ENSMUST00000158184 Gm24078 miRNA Interval_12577 chr10 3514676 3515081 + 0 NA Intergenic Intergenic -25410 ENSMUSG00000019762.4 ENSMUSG00000019762 ENSMUST00000141745 Iyd protein_coding Interval_122847 chr5 26044965 26045389 + 0 NA Intergenic Intergenic -5619 ENSMUSG00000073119.3 ENSMUSG00000073119 ENSMUST00000079447 Speer4a protein_coding Interval_61118 chr15 79339516 79340314 + 0 NA Intergenic Intergenic -8487 ENSMUSG00000042622.14 ENSMUSG00000042622 ENSMUST00000229285 Maff protein_coding Interval_147352 chr7 66055118 66055583 + 0 NA intron (ENSMUSG00000108793.1, intron 2 of 2) protein_coding-intron (ENSMUSG00000108793.1, intron 2 of 2) -5253 ENSMUSG00000030512.13 ENSMUSG00000030512 ENSMUST00000147702 Snrpa1 protein_coding Interval_24554 chr11 34388288 34388564 + 0 NA intron (ENSMUSG00000020143.15, intron 7 of 8) protein_coding-intron (ENSMUSG00000020143.15, intron 7 of 8) 73668 ENSMUSG00000069911.11 ENSMUSG00000069911 ENSMUST00000093192 Insyn2b protein_coding Interval_59882 chr15 60670833 60671376 + 0 NA intron (ENSMUSG00000115504.1, intron 2 of 2) lincRNA-intron (ENSMUSG00000115504.1, intron 2 of 2) 761 ENSMUSG00000115504.1 ENSMUSG00000115504 ENSMUST00000226738 Gm48946 lincRNA Interval_11961 chr1 187724414 187725381 + 0 NA intron (ENSMUSG00000026610.13, intron 1 of 1) protein_coding-intron (ENSMUSG00000026610.13, intron 1 of 7) 12092 ENSMUSG00000118492.1 ENSMUSG00000118492 ENSMUST00000238811 AC121143.1 processed_pseudogene Interval_26771 chr11 60358883 60360200 + 0 NA intron (ENSMUSG00000056598.16, intron 3 of 13) protein_coding-intron (ENSMUSG00000056598.16, intron 3 of 6) 6184 ENSMUSG00000056598.16 ENSMUSG00000056598 ENSMUST00000108722 Drc3 protein_coding Interval_153049 chr7 141056726 141057284 + 0 NA Intergenic Intergenic 5416 ENSMUSG00000109703.1 ENSMUSG00000109703 ENSMUST00000210199 Gm45299 transcribed_processed_pseudogene Interval_131818 chr5 140082735 140083120 + 0 NA intron (ENSMUSG00000085673.1, intron 1 of 1) protein_coding-intron (ENSMUSG00000029554.15, intron 16 of 17) 8822 ENSMUSG00000085673.1 ENSMUSG00000085673 ENSMUST00000142625 Gm16122 antisense Interval_113909 chr4 59805394 59806965 + 0 NA exon (ENSMUSG00000028385.14, exon 1 of 9) protein_coding-exon (ENSMUSG00000028385.14, exon 1 of 9) -4590 ENSMUSG00000038544.14 ENSMUSG00000038544 ENSMUST00000138097 Inip protein_coding Interval_170098 chr9 104418233 104418635 + 0 NA Intergenic Intergenic -7679 ENSMUSG00000089406.1 ENSMUSG00000089406 ENSMUST00000158781 Mir2136 miRNA Interval_147252 chr7 65140815 65141075 + 0 NA intron (ENSMUSG00000030518.17, intron 1 of 3) protein_coding-intron (ENSMUSG00000030518.17, intron 1 of 9) -29697 ENSMUSG00000108745.1 ENSMUSG00000108745 ENSMUST00000205552 Gm17908 processed_pseudogene Interval_122466 chr5 23167763 23168307 + 0 NA intron (ENSMUSG00000106379.1, intron 2 of 2) protein_coding-intron (ENSMUSG00000106379.1, intron 2 of 2) 55761 ENSMUSG00000104866.1 ENSMUSG00000104866 ENSMUST00000199085 Gm42948 antisense Interval_116026 chr4 107094411 107095247 + 0 NA Intergenic Intergenic -2879 ENSMUSG00000047636.3 ENSMUSG00000047636 ENSMUST00000221740 Cdcp2 protein_coding Interval_84664 chr19 14834754 14836656 + 0 NA Intergenic Intergenic -117225 ENSMUSG00000084675.1 ENSMUSG00000084675 ENSMUST00000122726 Gm26026 snRNA Interval_53743 chr14 61354834 61355076 + 0 NA intron (ENSMUSG00000021928.9, intron 1 of 1) protein_coding-intron (ENSMUSG00000021928.9, intron 1 of 3) 5453 ENSMUSG00000021928.9 ENSMUSG00000021928 ENSMUST00000225112 Ebpl protein_coding Interval_113048 chr4 47220628 47220939 + 0 NA intron (ENSMUSG00000028339.17, intron 2 of 39) protein_coding-intron (ENSMUSG00000028339.17, intron 2 of 38) -12324 ENSMUSG00000087500.1 ENSMUSG00000087500 ENSMUST00000153083 Gm12426 antisense Interval_127470 chr5 104173123 104173361 + 0 NA intron (ENSMUSG00000053268.7, intron 1 of 4) protein_coding-intron (ENSMUSG00000053268.7, intron 1 of 4) 2530 ENSMUSG00000053268.7 ENSMUSG00000053268 ENSMUST00000112771 Dspp protein_coding Interval_65023 chr16 18538273 18539484 + 0 NA intron (ENSMUSG00000000884.17, intron 3 of 5) protein_coding-intron (ENSMUSG00000000884.17, intron 2 of 7) 39938 ENSMUSG00000000884.17 ENSMUSG00000000884 ENSMUST00000151253 Gnb1l protein_coding Interval_132894 chr5 148570596 148571196 + 0 NA Intergenic Intergenic -17035 ENSMUSG00000106899.1 ENSMUSG00000106899 ENSMUST00000202969 1700013A02Rik TEC Interval_141339 chr6 127397984 127398585 + 0 NA Intergenic Intergenic -12846 ENSMUSG00000106883.1 ENSMUSG00000106883 ENSMUST00000200875 Gm34091 processed_pseudogene Interval_106505 chr3 96740049 96740469 + 0 NA intron (ENSMUSG00000028098.13, intron 1 of 5) protein_coding-intron (ENSMUSG00000028098.13, intron 1 of 8) 12420 ENSMUSG00000028098.13 ENSMUSG00000028098 ENSMUST00000199974 Rnf115 protein_coding Interval_16273 chr10 61845794 61846906 + 0 NA intron (ENSMUSG00000058806.15, intron 1 of 4) protein_coding-intron (ENSMUSG00000058806.15, intron 22 of 24) 2861 ENSMUSG00000058806.15 ENSMUSG00000058806 ENSMUST00000153120 Col13a1 protein_coding Interval_69650 chr16 94854832 94857256 + 0 NA intron (ENSMUSG00000043301.16, intron 1 of 3) protein_coding-intron (ENSMUSG00000043301.16, intron 2 of 4) 628 ENSMUSG00000043301.16 ENSMUSG00000043301 ENSMUST00000231744 Kcnj6 protein_coding Interval_71480 chr17 24061256 24061565 + 0 NA intron (ENSMUSG00000016946.6, intron 1 of 5) protein_coding-intron (ENSMUSG00000016946.6, intron 1 of 5) -1093 ENSMUSG00000016946.6 ENSMUSG00000016946 ENSMUST00000234555 Kctd5 protein_coding Interval_142894 chr6 146764045 146764281 + 0 NA TTS (ENSMUSG00000108108.1) TEC-TTS (ENSMUSG00000108108.1) 1582 ENSMUSG00000108108.1 ENSMUSG00000108108 ENSMUST00000203084 Gm44270 TEC Interval_44397 chr13 44615561 44616287 + 0 NA Intergenic Intergenic -6258 ENSMUSG00000113730.1 ENSMUSG00000113730 ENSMUST00000221956 Gm47805 lincRNA Interval_135250 chr6 37836916 37837653 + 0 NA Intergenic Intergenic 29280 ENSMUSG00000106853.1 ENSMUSG00000106853 ENSMUST00000201745 Gm7492 processed_pseudogene Interval_43048 chr13 23485060 23485989 + 0 NA intron (ENSMUSG00000053216.15, intron 3 of 6) protein_coding-intron (ENSMUSG00000053216.15, intron 3 of 9) 3306 ENSMUSG00000053216.15 ENSMUSG00000053216 ENSMUST00000110432 Btn2a2 protein_coding Interval_159261 chr8 92428767 92429295 + 0 NA Intergenic Intergenic -36736 ENSMUSG00000110290.1 ENSMUSG00000110290 ENSMUST00000210010 Gm45336 lincRNA Interval_24655 chr11 35678866 35679333 + 0 NA intron (ENSMUSG00000056427.10, intron 28 of 35) protein_coding-intron (ENSMUSG00000056427.10, intron 28 of 35) 62283 ENSMUSG00000065583.1 ENSMUSG00000065583 ENSMUST00000083649 Mir218-2 miRNA Interval_107570 chr3 108544317 108544674 + 0 NA intron (ENSMUSG00000027886.7, intron 4 of 4) protein_coding-intron (ENSMUSG00000027886.7, intron 4 of 4) -7973 ENSMUSG00000040412.17 ENSMUSG00000040412 ENSMUST00000148237 5330417C22Rik protein_coding Interval_8529 chr1 140661249 140661606 + 0 NA Intergenic Intergenic -5023 ENSMUSG00000102368.1 ENSMUSG00000102368 ENSMUST00000193820 4930590L20Rik antisense Interval_53118 chr14 54553706 54555039 + 0 NA promoter-TSS (ENSMUSG00000022177.9) protein_coding-promoter-TSS (ENSMUSG00000022177.9) 73 ENSMUSG00000022177.9 ENSMUSG00000022177 ENSMUST00000228043 Haus4 protein_coding Interval_51160 chr14 24253113 24254704 + 0 NA Intergenic Intergenic -10517 ENSMUSG00000091079.1 ENSMUSG00000091079 ENSMUST00000163715 Gm17105 sense_intronic Interval_2278 chr1 37638785 37639696 + 0 NA intron (ENSMUSG00000026090.16, intron 2 of 9) protein_coding-intron (ENSMUSG00000026090.16, intron 3 of 3) -21482 ENSMUSG00000104365.1 ENSMUSG00000104365 ENSMUST00000192005 4930470B04Rik TEC Interval_137131 chr6 67882785 67883453 + 0 NA TTS (ENSMUSG00000105005.1) processed_pseudogene-TTS (ENSMUSG00000105005.1) 491 ENSMUSG00000105005.1 ENSMUSG00000105005 ENSMUST00000196364 Gm9729 processed_pseudogene Interval_104776 chr3 72876612 72877114 + 0 NA Intergenic Intergenic 74846 ENSMUSG00000027790.14 ENSMUSG00000027790 ENSMUST00000170445 Sis protein_coding Interval_112242 chr4 37922974 37923293 + 0 NA Intergenic Intergenic -33215 ENSMUSG00000083983.1 ENSMUSG00000083983 ENSMUST00000119331 Gm12375 processed_pseudogene Interval_172450 chrX 20547907 20548729 + 0 NA Intergenic Intergenic -1469 ENSMUSG00000023070.6 ENSMUSG00000023070 ENSMUST00000023832 Rgn protein_coding Interval_143631 chr7 13365989 13366162 + 0 NA promoter-TSS (ENSMUSG00000109929.1) processed_pseudogene-promoter-TSS (ENSMUSG00000109929.1) -999 ENSMUSG00000109929.1 ENSMUSG00000109929 ENSMUST00000210046 Gm45268 processed_pseudogene Interval_124719 chr5 53543606 53544515 + 0 NA intron (ENSMUSG00000039191.12, intron 1 of 6) protein_coding-intron (ENSMUSG00000039191.12, intron 1 of 6) 3262 ENSMUSG00000107111.1 ENSMUSG00000107111 ENSMUST00000202154 Gm40304 antisense Interval_34413 chr12 3936589 3936953 + 0 NA Intergenic Intergenic -4731 ENSMUSG00000112271.1 ENSMUSG00000112271 ENSMUST00000220237 Gm9088 processed_pseudogene Interval_120321 chr4 147866789 147867147 + 0 NA intron (ENSMUSG00000029022.18, intron 1 of 9) protein_coding-intron (ENSMUSG00000029022.18, intron 1 of 9) 1555 ENSMUSG00000029022.18 ENSMUSG00000029022 ENSMUST00000174081 Miip protein_coding Interval_103040 chr3 34687802 34688746 + 0 NA Intergenic Intergenic 5641 ENSMUSG00000105101.1 ENSMUSG00000105101 ENSMUST00000197990 Gm43206 TEC Interval_90865 chr2 33064945 33065358 + 0 NA intron (ENSMUSG00000038860.15, intron 1 of 17) protein_coding-intron (ENSMUSG00000038860.15, intron 1 of 27) -30367 ENSMUSG00000038860.15 ENSMUSG00000038860 ENSMUST00000124000 Garnl3 protein_coding Interval_13104 chr10 11350979 11351532 + 0 NA intron (ENSMUSG00000055493.4, intron 1 of 1) protein_coding-intron (ENSMUSG00000055493.4, intron 1 of 3) 7802 ENSMUSG00000055493.4 ENSMUSG00000055493 ENSMUST00000161438 Epm2a protein_coding Interval_145854 chr7 40671257 40671616 + 0 NA Intergenic Intergenic -3301 ENSMUSG00000102004.3 ENSMUSG00000102004 ENSMUST00000207559 4933402C06Rik lincRNA Interval_149477 chr7 98926905 98927425 + 0 NA intron (ENSMUSG00000035354.9, intron 8 of 10) protein_coding-intron (ENSMUSG00000035354.9, intron 13 of 14) -8729 ENSMUSG00000089501.1 ENSMUSG00000089501 ENSMUST00000158876 Gm23479 snoRNA Interval_109252 chr3 138336526 138336917 + 0 NA Intergenic Intergenic -5251 ENSMUSG00000074206.7 ENSMUSG00000074206 ENSMUST00000090166 Adh6b protein_coding Interval_129539 chr5 120781605 120783080 + 0 NA intron (ENSMUSG00000107179.1, intron 1 of 2) antisense-intron (ENSMUSG00000107179.1, intron 1 of 2) 4546 ENSMUSG00000107179.1 ENSMUSG00000107179 ENSMUST00000201006 Gm43069 antisense Interval_92843 chr2 66297109 66297427 + 0 NA intron (ENSMUSG00000064329.13, intron 4 of 12) protein_coding-intron (ENSMUSG00000064329.13, intron 19 of 25) 20678 ENSMUSG00000064329.13 ENSMUSG00000064329 ENSMUST00000129508 Scn1a protein_coding Interval_15670 chr10 53379135 53380218 + 0 NA exon (ENSMUSG00000111892.1, exon 1 of 1) TEC-exon (ENSMUSG00000111892.1, exon 1 of 1) 224 ENSMUSG00000111892.1 ENSMUSG00000111892 ENSMUST00000220436 Gm47641 TEC Interval_143335 chr7 5617000 5617235 + 0 NA Intergenic Intergenic -5628 ENSMUSG00000117863.1 ENSMUSG00000117863 ENSMUST00000164880 Vmn1r61 protein_coding Interval_39332 chr12 86778731 86779908 + 0 NA Intergenic Intergenic -30638 ENSMUSG00000088403.1 ENSMUSG00000088403 ENSMUST00000157778 Gm25888 misc_RNA Interval_51229 chr14 25362277 25363406 + 0 NA intron (ENSMUSG00000097601.2, intron 1 of 1) lincRNA-intron (ENSMUSG00000097601.2, intron 1 of 1) 16768 ENSMUSG00000097601.2 ENSMUSG00000097601 ENSMUST00000181582 Gm26660 lincRNA Interval_137279 chr6 71006577 71006767 + 0 NA Intergenic Intergenic 33061 ENSMUSG00000077369.1 ENSMUSG00000077369 ENSMUST00000104181 Gm23485 snRNA Interval_112460 chr4 41369925 41370315 + 0 NA intron (ENSMUSG00000028437.14, intron 2 of 5) protein_coding-intron (ENSMUSG00000028437.14, intron 2 of 6) -1128 ENSMUSG00000028437.14 ENSMUSG00000028437 ENSMUST00000132235 Ubap1 protein_coding Interval_90863 chr2 33053970 33054226 + 0 NA TTS (ENSMUSG00000038860.15) protein_coding-TTS (ENSMUSG00000038860.15) -19314 ENSMUSG00000038860.15 ENSMUSG00000038860 ENSMUST00000124000 Garnl3 protein_coding Interval_110816 chr4 8705682 8706132 + 0 NA intron (ENSMUSG00000041235.12, intron 1 of 37) protein_coding-intron (ENSMUSG00000041235.12, intron 1 of 37) -32325 ENSMUSG00000082122.1 ENSMUSG00000082122 ENSMUST00000120923 Gm11809 processed_pseudogene Interval_9620 chr1 160316239 160316729 + 0 NA promoter-TSS (ENSMUSG00000103522.1) TEC-promoter-TSS (ENSMUSG00000103522.1) 11 ENSMUSG00000103522.1 ENSMUSG00000103522 ENSMUST00000195414 9430087J23Rik TEC Interval_102864 chr3 32373502 32373869 + 0 NA promoter-TSS (ENSMUSG00000102825.1) TEC-promoter-TSS (ENSMUSG00000102825.1) -696 ENSMUSG00000102825.1 ENSMUSG00000102825 ENSMUST00000191961 Gm36990 TEC Interval_65516 chr16 23014423 23015500 + 0 NA exon (ENSMUSG00000090021.2, exon 2 of 2) processed_pseudogene-exon (ENSMUSG00000090021.2, exon 2 of 2) 2077 ENSMUSG00000090021.2 ENSMUSG00000090021 ENSMUST00000159889 Gm6493 processed_pseudogene Interval_111188 chr4 14529391 14530143 + 0 NA intron (ENSMUSG00000040569.13, intron 11 of 18) protein_coding-intron (ENSMUSG00000040569.13, intron 11 of 18) 91730 ENSMUSG00000040569.13 ENSMUSG00000040569 ENSMUST00000143105 Slc26a7 protein_coding Interval_28304 chr11 75060807 75061370 + 0 NA intron (ENSMUSG00000038290.15, intron 4 of 4) protein_coding-intron (ENSMUSG00000038290.15, intron 13 of 18) 5674 ENSMUSG00000085738.2 ENSMUSG00000085738 ENSMUST00000119738 Gm12335 processed_pseudogene Interval_103510 chr3 45639655 45639847 + 0 NA Intergenic Intergenic 51153 ENSMUSG00000103534.1 ENSMUSG00000103534 ENSMUST00000193305 Gm37835 processed_pseudogene Interval_142946 chr6 147203646 147204002 + 0 NA intron (ENSMUSG00000085600.7, intron 2 of 2) lincRNA-intron (ENSMUSG00000085600.7, intron 2 of 2) 23580 ENSMUSG00000085600.7 ENSMUSG00000085600 ENSMUST00000133471 E330012B07Rik lincRNA Interval_97036 chr2 130693742 130694053 + 0 NA intron (ENSMUSG00000074796.10, intron 3 of 9) protein_coding-intron (ENSMUSG00000074796.10, intron 3 of 20) -5332 ENSMUSG00000074796.10 ENSMUSG00000074796 ENSMUST00000127397 Slc4a11 protein_coding Interval_72015 chr17 27579223 27579449 + 0 NA TTS (ENSMUSG00000024213.14) protein_coding-TTS (ENSMUSG00000024213.14) -13670 ENSMUSG00000062753.14 ENSMUSG00000062753 ENSMUST00000138728 AI413582 protein_coding Interval_66917 chr16 38510545 38512930 + 0 NA promoter-TSS (ENSMUSG00000081605.1) processed_pseudogene-promoter-TSS (ENSMUSG00000081605.1) -828 ENSMUSG00000081605.1 ENSMUSG00000081605 ENSMUST00000117656 Gm15953 processed_pseudogene Interval_103176 chr3 36330582 36331252 + 0 NA Intergenic Intergenic -56257 ENSMUSG00000106140.1 ENSMUSG00000106140 ENSMUST00000198215 Gm42208 lincRNA Interval_47865 chr13 93989671 93991515 + 0 NA intron (ENSMUSG00000113791.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000113791.1, intron 1 of 2) 1175 ENSMUSG00000113791.1 ENSMUSG00000113791 ENSMUST00000221440 Gm47216 lincRNA Interval_23885 chr11 27659115 27659359 + 0 NA Intergenic Intergenic -151137 ENSMUSG00000082243.1 ENSMUSG00000082243 ENSMUST00000122413 Gm3810 processed_pseudogene Interval_156109 chr8 44829915 44830133 + 0 NA Intergenic Intergenic 105135 ENSMUSG00000110409.1 ENSMUSG00000110409 ENSMUST00000211534 Gm9908 bidirectional_promoter_lncRNA Interval_19598 chr10 105226080 105226434 + 0 NA intron (ENSMUSG00000036019.8, intron 11 of 11) protein_coding-intron (ENSMUSG00000036019.8, intron 11 of 11) 8677 ENSMUSG00000036019.8 ENSMUSG00000036019 ENSMUST00000139741 Tmtc2 protein_coding Interval_76260 chr17 78578246 78578674 + 0 NA TTS (ENSMUSG00000024076.10) protein_coding-TTS (ENSMUSG00000024076.10) 4532 ENSMUSG00000024076.10 ENSMUSG00000024076 ENSMUST00000232864 Vit protein_coding Interval_17941 chr10 80925182 80926390 + 0 NA Intergenic Intergenic -4375 ENSMUSG00000015312.9 ENSMUSG00000015312 ENSMUST00000219449 Gadd45b protein_coding Interval_167266 chr9 66894709 66896313 + 0 NA intron (ENSMUSG00000036943.9, intron 1 of 7) protein_coding-intron (ENSMUSG00000036943.9, intron 1 of 7) 24176 ENSMUSG00000036943.9 ENSMUSG00000036943 ENSMUST00000041139 Rab8b protein_coding Interval_124047 chr5 37821081 37821633 + 0 NA exon (ENSMUSG00000048450.10, exon 2 of 2) protein_coding-exon (ENSMUSG00000048450.10, exon 2 of 2) 3225 ENSMUSG00000048450.10 ENSMUSG00000048450 ENSMUST00000183013 Msx1 protein_coding Interval_121229 chr4 154221775 154222753 + 0 NA intron (ENSMUSG00000057751.14, intron 3 of 36) protein_coding-intron (ENSMUSG00000057751.14, intron 3 of 36) 1723 ENSMUSG00000081276.1 ENSMUSG00000081276 ENSMUST00000121194 Gm13132 processed_pseudogene Interval_102679 chr3 29768711 29769566 + 0 NA Intergenic Intergenic -2146 ENSMUSG00000103095.1 ENSMUSG00000103095 ENSMUST00000191640 Gm37557 processed_pseudogene Interval_152679 chr7 136152672 136153137 + 0 NA Intergenic Intergenic 20392 ENSMUSG00000110396.1 ENSMUSG00000110396 ENSMUST00000209653 Gm36737 lincRNA Interval_72932 chr17 33628650 33629919 + 0 NA promoter-TSS (ENSMUSG00000073423.10) protein_coding-promoter-TSS (ENSMUSG00000073423.10) 157 ENSMUSG00000073423.10 ENSMUSG00000073423 ENSMUST00000169781 Zfp414 protein_coding Interval_147294 chr7 65536016 65536391 + 0 NA Intergenic Intergenic -45867 ENSMUSG00000086662.7 ENSMUSG00000086662 ENSMUST00000154632 BC046251 lincRNA Interval_23452 chr11 22699069 22699255 + 0 NA Intergenic Intergenic 33824 ENSMUSG00000085979.1 ENSMUSG00000085979 ENSMUST00000143643 Gm12055 lincRNA Interval_85736 chr19 30193862 30194107 + 0 NA Intergenic Intergenic 33364 ENSMUSG00000058607.4 ENSMUSG00000058607 ENSMUST00000080982 Rpl31-ps20 processed_pseudogene Interval_151839 chr7 127025132 127027874 + 0 NA promoter-TSS (ENSMUSG00000030678.7) protein_coding-promoter-TSS (ENSMUSG00000030678.7) -1371 ENSMUSG00000030678.7 ENSMUSG00000030678 ENSMUST00000206291 Maz protein_coding Interval_111828 chr4 31623182 31623397 + 0 NA Intergenic Intergenic 242817 ENSMUSG00000082254.1 ENSMUSG00000082254 ENSMUST00000118967 Gm11922 processed_pseudogene Interval_23875 chr11 27411921 27412967 + 0 NA Intergenic Intergenic 5942 ENSMUSG00000080735.1 ENSMUSG00000080735 ENSMUST00000117426 Gm12075 processed_pseudogene Interval_166288 chr9 58063373 58063836 + 0 NA promoter-TSS (ENSMUSG00000032327.14) protein_coding-promoter-TSS (ENSMUSG00000032327.14) 31330 ENSMUSG00000086624.1 ENSMUSG00000086624 ENSMUST00000153106 Gm16130 antisense Interval_58916 chr15 39988845 39989834 + 0 NA Intergenic Intergenic 2325 ENSMUSG00000115152.1 ENSMUSG00000115152 ENSMUST00000226734 Gm49253 processed_pseudogene Interval_95812 chr2 116838655 116839329 + 0 NA Intergenic Intergenic 38176 ENSMUSG00000086462.1 ENSMUSG00000086462 ENSMUST00000151391 Gm13990 antisense Interval_108141 chr3 121833990 121834678 + 0 NA Intergenic Intergenic -10485 ENSMUSG00000105889.1 ENSMUSG00000105889 ENSMUST00000198031 Gm42776 processed_pseudogene Interval_97806 chr2 144189291 144190434 + 0 NA promoter-TSS (ENSMUSG00000074758.10) lincRNA-promoter-TSS (ENSMUSG00000074758.10) 1189 ENSMUSG00000074758.10 ENSMUSG00000074758 ENSMUST00000209482 Gm5535 lincRNA Interval_105479 chr3 86905749 86906294 + 0 NA exon (ENSMUSG00000028078.14, exon 2 of 16) protein_coding-exon (ENSMUSG00000028078.14, exon 2 of 16) 14314 ENSMUSG00000028078.14 ENSMUSG00000028078 ENSMUST00000194452 Dclk2 protein_coding Interval_19411 chr10 99028077 99028618 + 0 NA Intergenic Intergenic -11125 ENSMUSG00000112660.1 ENSMUSG00000112660 ENSMUST00000219298 Gm48761 TEC Interval_132823 chr5 148130452 148131537 + 0 NA intron (ENSMUSG00000029651.16, intron 2 of 3) protein_coding-intron (ENSMUSG00000029651.16, intron 4 of 14) 53383 ENSMUSG00000066554.6 ENSMUSG00000066554 ENSMUST00000150411 Gm10167 processed_pseudogene Interval_15087 chr10 42485255 42485688 + 0 NA Intergenic Intergenic -7191 ENSMUSG00000038302.14 ENSMUSG00000038302 ENSMUST00000149832 Afg1l protein_coding Interval_46558 chr13 67148310 67149162 + 0 NA Intergenic Intergenic -3370 ENSMUSG00000114568.1 ENSMUSG00000114568 ENSMUST00000223605 Gm48732 lincRNA Interval_59475 chr15 53573426 53574766 + 0 NA intron (ENSMUSG00000058656.13, intron 4 of 4) protein_coding-intron (ENSMUSG00000058656.13, intron 4 of 4) 39102 ENSMUSG00000077567.1 ENSMUSG00000077567 ENSMUST00000104379 Gm23200 snoRNA Interval_160996 chr8 116755368 116755877 + 0 NA Intergenic Intergenic 9857 ENSMUSG00000074072.2 ENSMUSG00000074072 ENSMUST00000098379 Gm10620 pseudogene Interval_24297 chr11 32173786 32174263 + 0 NA Intergenic Intergenic -10981 ENSMUSG00000081613.1 ENSMUSG00000081613 ENSMUST00000121140 Gm12109 processed_pseudogene Interval_145724 chr7 37793087 37793513 + 0 NA Intergenic Intergenic 31047 ENSMUSG00000064591.1 ENSMUSG00000064591 ENSMUST00000082657 Gm22302 snRNA Interval_56641 chr14 121092481 121092708 + 0 NA intron (ENSMUSG00000025555.14, intron 1 of 26) protein_coding-intron (ENSMUSG00000025555.14, intron 1 of 26) -9485 ENSMUSG00000025555.14 ENSMUSG00000025555 ENSMUST00000137971 Farp1 protein_coding Interval_77793 chr18 3543742 3544103 + 0 NA Intergenic Intergenic -14753 ENSMUSG00000117454.1 ENSMUSG00000117454 ENSMUST00000234359 Gm50090 processed_pseudogene Interval_112397 chr4 41038175 41038903 + 0 NA intron (ENSMUSG00000028427.13, intron 1 of 5) protein_coding-intron (ENSMUSG00000028427.13, intron 3 of 7) -2229 ENSMUSG00000028427.13 ENSMUSG00000028427 ENSMUST00000149517 Aqp7 protein_coding Interval_106225 chr3 94769211 94770299 + 0 NA intron (ENSMUSG00000068876.16, intron 12 of 20) protein_coding-intron (ENSMUSG00000068876.16, intron 12 of 20) -11639 ENSMUSG00000081355.1 ENSMUSG00000081355 ENSMUST00000118050 Gm15264 unprocessed_pseudogene Interval_103846 chr3 53590267 53591330 + 0 NA intron (ENSMUSG00000037016.11, intron 2 of 23) protein_coding-intron (ENSMUSG00000037016.11, intron 2 of 23) -67778 ENSMUSG00000037016.11 ENSMUSG00000037016 ENSMUST00000199323 Frem2 protein_coding Interval_6037 chr1 94298412 94298807 + 0 NA Intergenic Intergenic 94192 ENSMUSG00000100990.1 ENSMUSG00000100990 ENSMUST00000190284 Gm7891 processed_pseudogene Interval_134397 chr6 28260758 28262554 + 0 NA TTS (ENSMUSG00000043340.3) antisense-TTS (ENSMUSG00000043340.3) 276 ENSMUSG00000039841.14 ENSMUSG00000039841 ENSMUST00000155494 Zfp800 protein_coding Interval_55299 chr14 81377551 81377971 + 0 NA Intergenic Intergenic 7716 ENSMUSG00000115465.1 ENSMUSG00000115465 ENSMUST00000228079 Cyp2c73-ps processed_pseudogene Interval_8822 chr1 151380440 151380946 + 0 NA intron (ENSMUSG00000052748.14, intron 1 of 1) protein_coding-intron (ENSMUSG00000052748.14, intron 16 of 19) 19446 ENSMUSG00000023150.14 ENSMUSG00000023150 ENSMUST00000190872 Ivns1abp protein_coding Interval_168816 chr9 87431238 87432212 + 0 NA Intergenic Intergenic 37475 ENSMUSG00000099385.1 ENSMUSG00000099385 ENSMUST00000188230 Gm9540 processed_pseudogene Interval_84454 chr19 11061264 11061438 + 0 NA Intergenic Intergenic -5543 ENSMUSG00000075010.5 ENSMUSG00000075010 ENSMUST00000099676 AW112010 lincRNA Interval_114053 chr4 62763753 62764557 + 0 NA Intergenic Intergenic -36618 ENSMUSG00000086139.1 ENSMUSG00000086139 ENSMUST00000143618 Gm11211 lincRNA Interval_39819 chr12 98717236 98717426 + 0 NA intron (ENSMUSG00000021009.15, intron 2 of 2) protein_coding-intron (ENSMUSG00000021009.15, intron 2 of 18) -33581 ENSMUSG00000021009.15 ENSMUSG00000021009 ENSMUST00000222071 Ptpn21 protein_coding Interval_36253 chr12 40330273 40330460 + 0 NA intron (ENSMUSG00000055917.15, intron 6 of 12) protein_coding-intron (ENSMUSG00000055917.15, intron 5 of 11) -1388 ENSMUSG00000055917.15 ENSMUSG00000055917 ENSMUST00000221847 Zfp277 protein_coding Interval_49862 chr13 117287095 117288347 + 0 NA Intergenic Intergenic -66649 ENSMUSG00000091423.2 ENSMUSG00000091423 ENSMUST00000238456 Gm17509 antisense Interval_1649 chr1 30787020 30787225 + 0 NA Intergenic Intergenic 7753 ENSMUSG00000101180.1 ENSMUSG00000101180 ENSMUST00000186120 Gm2914 processed_pseudogene Interval_120195 chr4 144084966 144085273 + 0 NA Intergenic Intergenic -21412 ENSMUSG00000073723.10 ENSMUSG00000073723 ENSMUST00000105761 Gm13102 protein_coding Interval_20731 chr10 120593802 120594356 + 0 NA Intergenic Intergenic -11458 ENSMUSG00000088924.1 ENSMUSG00000088924 ENSMUST00000158299 Gm24298 snoRNA Interval_7395 chr1 130877779 130878747 + 0 NA promoter-TSS (ENSMUSG00000042474.6) protein_coding-promoter-TSS (ENSMUSG00000042474.6) 9076 ENSMUSG00000026420.16 ENSMUSG00000026420 ENSMUST00000188148 Il24 protein_coding Interval_10814 chr1 175579037 175579309 + 0 NA TTS (ENSMUSG00000103079.1) lincRNA-TTS (ENSMUSG00000103079.1) 4864 ENSMUSG00000103079.1 ENSMUSG00000103079 ENSMUST00000195831 Gm36307 lincRNA Interval_38179 chr12 76216309 76217280 + 0 NA intron (ENSMUSG00000021056.8, intron 3 of 3) protein_coding-intron (ENSMUSG00000021056.8, intron 5 of 9) 12670 ENSMUSG00000021056.8 ENSMUSG00000021056 ENSMUST00000219327 Tex21 protein_coding Interval_66326 chr16 33165984 33166608 + 0 NA Intergenic Intergenic -18775 ENSMUSG00000022807.9 ENSMUSG00000022807 ENSMUST00000231617 Osbpl11 protein_coding Interval_7449 chr1 131431811 131432136 + 0 NA intron (ENSMUSG00000026425.15, intron 3 of 4) protein_coding-intron (ENSMUSG00000026425.15, intron 3 of 22) 15722 ENSMUSG00000099959.1 ENSMUSG00000099959 ENSMUST00000190146 Gm29487 processed_pseudogene Interval_4080 chr1 67625561 67626747 + 0 NA Intergenic Intergenic 9179 ENSMUSG00000095282.1 ENSMUSG00000095282 ENSMUST00000174899 Gm22548 miRNA Interval_124656 chr5 52877347 52877690 + 0 NA Intergenic Intergenic 22171 ENSMUSG00000029176.13 ENSMUSG00000029176 ENSMUST00000138629 Anapc4 protein_coding Interval_97809 chr2 144207209 144208545 + 0 NA promoter-TSS (ENSMUSG00000074758.10) lincRNA-promoter-TSS (ENSMUSG00000074758.10) -16826 ENSMUSG00000074758.10 ENSMUSG00000074758 ENSMUST00000209482 Gm5535 lincRNA Interval_18610 chr10 88426120 88427723 + 0 NA intron (ENSMUSG00000035311.16, intron 6 of 19) protein_coding-intron (ENSMUSG00000035311.16, intron 7 of 20) -9123 ENSMUSG00000035311.16 ENSMUSG00000035311 ENSMUST00000155306 Gnptab protein_coding Interval_155365 chr8 32529629 32529833 + 0 NA intron (ENSMUSG00000062991.9, intron 1 of 12) protein_coding-intron (ENSMUSG00000062991.9, intron 1 of 8) 343602 ENSMUSG00000089370.1 ENSMUSG00000089370 ENSMUST00000158745 Gm22140 snRNA Interval_33956 chr11 119650991 119651455 + 0 NA intron (ENSMUSG00000025583.15, intron 1 of 32) protein_coding-intron (ENSMUSG00000025583.15, intron 1 of 33) -4593 ENSMUSG00000083870.1 ENSMUSG00000083870 ENSMUST00000121392 Gm11761 processed_pseudogene Interval_121272 chr4 154569397 154571182 + 0 NA intron (ENSMUSG00000039410.16, intron 1 of 2) protein_coding-intron (ENSMUSG00000039410.16, intron 1 of 16) 20007 ENSMUSG00000086565.1 ENSMUSG00000086565 ENSMUST00000143888 Gm13133 antisense Interval_158059 chr8 78467809 78468685 + 0 NA Intergenic Intergenic 18163 ENSMUSG00000110057.1 ENSMUSG00000110057 ENSMUST00000209570 Gm2225 processed_pseudogene Interval_124529 chr5 50048521 50048799 + 0 NA intron (ENSMUSG00000029090.12, intron 1 of 18) protein_coding-intron (ENSMUSG00000029090.12, intron 1 of 18) 9985 ENSMUSG00000029090.12 ENSMUSG00000029090 ENSMUST00000199132 Adgra3 protein_coding Interval_92152 chr2 54384827 54386151 + 0 NA Intergenic Intergenic -28598 ENSMUSG00000083684.1 ENSMUSG00000083684 ENSMUST00000120147 Gm14034 processed_pseudogene Interval_37863 chr12 72674224 72675937 + 0 NA Intergenic Intergenic -10326 ENSMUSG00000021094.10 ENSMUSG00000021094 ENSMUST00000221674 Dhrs7 protein_coding Interval_105883 chr3 89905814 89906408 + 0 NA intron (ENSMUSG00000027947.11, intron 1 of 9) protein_coding-intron (ENSMUSG00000027947.11, intron 1 of 9) -6805 ENSMUSG00000105941.1 ENSMUSG00000105941 ENSMUST00000198429 Gm42809 antisense Interval_24612 chr11 35241921 35242291 + 0 NA intron (ENSMUSG00000056427.10, intron 2 of 3) protein_coding-intron (ENSMUSG00000056427.10, intron 4 of 35) 27705 ENSMUSG00000088125.1 ENSMUSG00000088125 ENSMUST00000157500 Gm26070 snoRNA Interval_66720 chr16 36622116 36622795 + 0 NA intron (ENSMUSG00000022901.13, intron 2 of 2) protein_coding-intron (ENSMUSG00000022901.13, intron 2 of 7) -17936 ENSMUSG00000022901.13 ENSMUSG00000022901 ENSMUST00000145506 Cd86 protein_coding Interval_154178 chr8 13229295 13229592 + 0 NA intron (ENSMUSG00000031448.12, intron 7 of 7) protein_coding-intron (ENSMUSG00000031448.12, intron 7 of 7) 24719 ENSMUSG00000031448.12 ENSMUSG00000031448 ENSMUST00000171619 Adprhl1 protein_coding Interval_127568 chr5 105429075 105429405 + 0 NA intron (ENSMUSG00000070639.5, intron 1 of 4) protein_coding-intron (ENSMUSG00000070639.5, intron 1 of 4) 13465 ENSMUSG00000070639.5 ENSMUSG00000070639 ENSMUST00000112707 Lrrc8b protein_coding Interval_54684 chr14 73289279 73289484 + 0 NA intron (ENSMUSG00000022105.6, intron 4 of 26) protein_coding-intron (ENSMUSG00000022105.6, intron 4 of 26) -45711 ENSMUSG00000115573.1 ENSMUSG00000115573 ENSMUST00000226676 Gm49131 processed_pseudogene Interval_80017 chr18 36663748 36665041 + 0 NA intron (ENSMUSG00000090264.1, intron 1 of 2) protein_coding-intron (ENSMUSG00000090264.1, intron 1 of 2) 334 ENSMUSG00000090264.1 ENSMUSG00000090264 ENSMUST00000036765 Eif4ebp3 protein_coding Interval_24808 chr11 39081548 39081872 + 0 NA Intergenic Intergenic -283433 ENSMUSG00000070249.1 ENSMUSG00000070249 ENSMUST00000093736 Gm23520 snRNA Interval_102103 chr3 17613236 17614148 + 0 NA Intergenic Intergenic -56996 ENSMUSG00000104242.1 ENSMUSG00000104242 ENSMUST00000195444 Gm38154 processed_pseudogene Interval_5770 chr1 91611283 91612002 + 0 NA intron (ENSMUSG00000101705.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000101705.1, intron 1 of 2) 236 ENSMUSG00000101705.1 ENSMUSG00000101705 ENSMUST00000188800 Gm28380 lincRNA Interval_25365 chr11 46716188 46716422 + 0 NA Intergenic Intergenic -11513 ENSMUSG00000080776.1 ENSMUSG00000080776 ENSMUST00000119853 Gm12174 processed_pseudogene Interval_27078 chr11 62719928 62720647 + 0 NA intron (ENSMUSG00000005267.13, intron 4 of 5) protein_coding-intron (ENSMUSG00000005267.13, intron 4 of 4) 8379 ENSMUSG00000005267.13 ENSMUSG00000005267 ENSMUST00000127732 Zfp287 protein_coding Interval_38617 chr12 80577113 80577852 + 0 NA intron (ENSMUSG00000021130.8, intron 6 of 15) protein_coding-intron (ENSMUSG00000021130.8, intron 5 of 14) 19658 ENSMUSG00000112421.1 ENSMUSG00000112421 ENSMUST00000220065 4933406B15Rik antisense Interval_102212 chr3 19508890 19510279 + 0 NA intron (ENSMUSG00000027606.12, intron 1 of 4) protein_coding-intron (ENSMUSG00000027606.12, intron 1 of 4) -21663 ENSMUSG00000027606.12 ENSMUSG00000027606 ENSMUST00000165693 Dnajc5b protein_coding Interval_82672 chr18 75831636 75831984 + 0 NA intron (ENSMUSG00000044646.15, intron 1 of 5) protein_coding-intron (ENSMUSG00000044646.15, intron 1 of 4) 11595 ENSMUSG00000044646.15 ENSMUSG00000044646 ENSMUST00000167921 Zbtb7c protein_coding Interval_159328 chr8 93591401 93593925 + 0 NA intron (ENSMUSG00000110534.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000110534.1, intron 1 of 2) 35961 ENSMUSG00000110534.1 ENSMUSG00000110534 ENSMUST00000212213 Gm45708 lincRNA Interval_72909 chr17 33304099 33306451 + 0 NA exon (ENSMUSG00000096910.2, exon 4 of 4) protein_coding-exon (ENSMUSG00000096910.2, exon 4 of 4) 470 ENSMUSG00000091515.5 ENSMUSG00000091515 ENSMUST00000182230 Zfp422-ps unprocessed_pseudogene Interval_140001 chr6 113326215 113327464 + 0 NA promoter-TSS (ENSMUSG00000030271.14) protein_coding-promoter-TSS (ENSMUSG00000030271.14) -92 ENSMUSG00000085012.1 ENSMUSG00000085012 ENSMUST00000156734 Gm15492 antisense Interval_11103 chr1 179380350 179380727 + 0 NA intron (ENSMUSG00000055067.15, intron 1 of 1) protein_coding-intron (ENSMUSG00000055067.15, intron 1 of 1) 137467 ENSMUSG00000055067.15 ENSMUSG00000055067 ENSMUST00000194237 Smyd3 protein_coding Interval_66034 chr16 31070401 31071307 + 0 NA intron (ENSMUSG00000047434.14, intron 1 of 3) protein_coding-intron (ENSMUSG00000047434.14, intron 1 of 3) -1028 ENSMUSG00000047434.14 ENSMUSG00000047434 ENSMUST00000142870 Xxylt1 protein_coding Interval_172852 chrX 52145945 52146318 + 0 NA intron (ENSMUSG00000031119.4, intron 1 of 8) protein_coding-intron (ENSMUSG00000031119.4, intron 1 of 8) 19121 ENSMUSG00000031119.4 ENSMUSG00000031119 ENSMUST00000033450 Gpc4 protein_coding Interval_142768 chr6 145476769 145477007 + 0 NA intron (ENSMUSG00000054966.13, intron 2 of 10) protein_coding-intron (ENSMUSG00000054966.13, intron 2 of 10) 12699 ENSMUSG00000088781.1 ENSMUSG00000088781 ENSMUST00000158156 Gm25373 snoRNA Interval_105682 chr3 88552670 88554521 + 0 NA promoter-TSS (ENSMUSG00000008604.11) protein_coding-promoter-TSS (ENSMUSG00000008604.11) -702 ENSMUSG00000028062.15 ENSMUSG00000028062 ENSMUST00000145172 Lamtor2 protein_coding Interval_27405 chr11 67386840 67387831 + 0 NA Intergenic Intergenic 22550 ENSMUSG00000060180.12 ENSMUSG00000060180 ENSMUST00000181027 Myh13 protein_coding Interval_150298 chr7 109444783 109445516 + 0 NA TTS (ENSMUSG00000085407.1) antisense-TTS (ENSMUSG00000085407.1) -6068 ENSMUSG00000031027.15 ENSMUSG00000031027 ENSMUST00000121378 Stk33 protein_coding Interval_43106 chr13 24135224 24135810 + 0 NA intron (ENSMUSG00000021338.17, intron 11 of 37) protein_coding-intron (ENSMUSG00000021338.17, intron 11 of 37) -60380 ENSMUSG00000081707.1 ENSMUSG00000081707 ENSMUST00000120579 Gm11343 processed_pseudogene Interval_81834 chr18 65150482 65151114 + 0 NA intron (ENSMUSG00000024589.18, intron 5 of 29) protein_coding-intron (ENSMUSG00000024589.18, intron 5 of 29) 67744 ENSMUSG00000024589.18 ENSMUSG00000024589 ENSMUST00000236100 Nedd4l protein_coding Interval_46578 chr13 67331760 67332995 + 0 NA exon (ENSMUSG00000057842.14, exon 1 of 5) protein_coding-exon (ENSMUSG00000057842.14, exon 1 of 5) 123 ENSMUSG00000057842.14 ENSMUSG00000057842 ENSMUST00000171466 Zfp595 protein_coding Interval_54832 chr14 75674593 75675313 + 0 NA intron (ENSMUSG00000022002.2, intron 6 of 13) protein_coding-intron (ENSMUSG00000022002.2, intron 6 of 13) -23424 ENSMUSG00000064394.1 ENSMUSG00000064394 ENSMUST00000082460 Gm23622 snRNA Interval_39086 chr12 84951856 84952102 + 0 NA intron (ENSMUSG00000042350.13, intron 1 of 3) protein_coding-intron (ENSMUSG00000042350.13, intron 1 of 3) -5056 ENSMUSG00000042350.13 ENSMUSG00000042350 ENSMUST00000168713 Arel1 protein_coding Interval_62592 chr15 95064116 95065026 + 0 NA intron (ENSMUSG00000063296.5, intron 6 of 7) protein_coding-intron (ENSMUSG00000063296.5, intron 6 of 7) -77433 ENSMUSG00000077447.1 ENSMUSG00000077447 ENSMUST00000104259 Gm23129 snoRNA Interval_172556 chrX 36755138 36755353 + 0 NA intron (ENSMUSG00000037636.6, intron 2 of 4) protein_coding-intron (ENSMUSG00000037636.6, intron 2 of 4) 11534 ENSMUSG00000037636.6 ENSMUSG00000037636 ENSMUST00000133699 Slc25a43 protein_coding Interval_4217 chr1 71672437 71674053 + 0 NA Intergenic Intergenic -20073 ENSMUSG00000026193.15 ENSMUSG00000026193 ENSMUST00000186736 Fn1 protein_coding Interval_173819 chrX 105069373 105070515 + 0 NA promoter-TSS (ENSMUSG00000087174.7) processed_transcript-promoter-TSS (ENSMUSG00000087174.7) 102 ENSMUSG00000087174.7 ENSMUSG00000087174 ENSMUST00000138137 5530601H04Rik processed_transcript Interval_79676 chr18 34454092 34454320 + 0 NA intron (ENSMUSG00000036501.7, intron 6 of 7) protein_coding-intron (ENSMUSG00000036501.7, intron 13 of 20) 43697 ENSMUSG00000036501.7 ENSMUSG00000036501 ENSMUST00000236598 Fam13b protein_coding Interval_151662 chr7 125783378 125783888 + 0 NA intron (ENSMUSG00000032743.15, intron 5 of 26) protein_coding-intron (ENSMUSG00000032743.15, intron 6 of 27) 75716 ENSMUSG00000032743.15 ENSMUSG00000032743 ENSMUST00000155059 D430042O09Rik protein_coding Interval_124401 chr5 45519800 45521037 + 0 NA promoter-TSS (ENSMUSG00000015804.14) protein_coding-promoter-TSS (ENSMUSG00000015804.14) 189 ENSMUSG00000015804.14 ENSMUSG00000015804 ENSMUST00000139586 Med28 protein_coding Interval_3087 chr1 53093175 53093424 + 0 NA Intergenic Intergenic -6751 ENSMUSG00000089334.1 ENSMUSG00000089334 ENSMUST00000158709 Gm24349 snoRNA Interval_75834 chr17 71693473 71694077 + 0 NA intron (ENSMUSG00000045761.16, intron 6 of 19) protein_coding-intron (ENSMUSG00000045761.16, intron 6 of 19) 8970 ENSMUSG00000045761.16 ENSMUSG00000045761 ENSMUST00000129072 Togaram2 protein_coding Interval_58792 chr15 38089479 38090417 + 0 NA Intergenic Intergenic 10846 ENSMUSG00000115771.1 ENSMUSG00000115771 ENSMUST00000228698 Gm49312 bidirectional_promoter_lncRNA Interval_108880 chr3 132949281 132950825 + 0 NA promoter-TSS (ENSMUSG00000040998.18) protein_coding-promoter-TSS (ENSMUSG00000040998.18) 10183 ENSMUSG00000089431.1 ENSMUSG00000089431 ENSMUST00000158806 Gm23196 snRNA Interval_46784 chr13 70360058 70360980 + 0 NA Intergenic Intergenic 62262 ENSMUSG00000114054.1 ENSMUSG00000114054 ENSMUST00000220989 Gm47706 processed_pseudogene Interval_136877 chr6 62291773 62292746 + 0 NA intron (ENSMUSG00000039578.17, intron 2 of 2) protein_coding-intron (ENSMUSG00000039578.17, intron 9 of 9) 1751 ENSMUSG00000107590.1 ENSMUSG00000107590 ENSMUST00000204019 Gm43897 processed_pseudogene Interval_47157 chr13 76648688 76648884 + 0 NA intron (ENSMUSG00000021596.16, intron 2 of 7) protein_coding-intron (ENSMUSG00000021596.16, intron 2 of 20) 35647 ENSMUSG00000096216.2 ENSMUSG00000096216 ENSMUST00000178439 Gm21959 processed_pseudogene Interval_110192 chr3 154134182 154134556 + 0 NA intron (ENSMUSG00000028360.10, intron 1 of 21) protein_coding-intron (ENSMUSG00000028360.10, intron 1 of 21) 2029 ENSMUSG00000090114.1 ENSMUSG00000090114 ENSMUST00000161613 Gm3076 processed_pseudogene Interval_151846 chr7 127080018 127080340 + 0 NA TTS (ENSMUSG00000064429.1) snRNA-TTS (ENSMUSG00000064429.1) 698 ENSMUSG00000064429.1 ENSMUSG00000064429 ENSMUST00000082495 Gm22747 snRNA Interval_104627 chr3 68940728 68941358 + 0 NA intron (ENSMUSG00000027778.15, intron 4 of 4) protein_coding-intron (ENSMUSG00000027778.15, intron 8 of 18) -23720 ENSMUSG00000111756.1 ENSMUSG00000111756 ENSMUST00000217619 Gm48183 TEC Interval_62450 chr15 93093454 93093935 + 0 NA Intergenic Intergenic 4464 ENSMUSG00000115921.1 ENSMUSG00000115921 ENSMUST00000229620 Gm18685 processed_pseudogene Interval_352 chr1 4456177 4457117 + 0 NA Intergenic Intergenic 40110 ENSMUSG00000025902.13 ENSMUSG00000025902 ENSMUST00000192913 Sox17 protein_coding Interval_140513 chr6 119116463 119116866 + 0 NA intron (ENSMUSG00000051331.16, intron 1 of 3) protein_coding-intron (ENSMUSG00000051331.16, intron 1 of 46) -75692 ENSMUSG00000041477.14 ENSMUSG00000041477 ENSMUST00000127059 Dcp1b protein_coding Interval_24963 chr11 42094449 42096014 + 0 NA Intergenic Intergenic 86873 ENSMUSG00000010803.13 ENSMUSG00000010803 ENSMUST00000206085 Gabra1 protein_coding Interval_43451 chr13 31270957 31271163 + 0 NA Intergenic Intergenic -29974 ENSMUSG00000087460.2 ENSMUSG00000087460 ENSMUST00000153175 4930401O12Rik lincRNA Interval_9335 chr1 156364272 156364739 + 0 NA TTS (ENSMUSG00000026601.14) protein_coding-TTS (ENSMUSG00000026601.14) -1535 ENSMUSG00000078193.2 ENSMUSG00000078193 ENSMUST00000102782 Gm2000 protein_coding Interval_163542 chr9 22002194 22003509 + 0 NA promoter-TSS (ENSMUSG00000003402.14) protein_coding-promoter-TSS (ENSMUSG00000003402.14) 45 ENSMUSG00000003402.14 ENSMUSG00000003402 ENSMUST00000214565 Prkcsh protein_coding Interval_117840 chr4 126538389 126538789 + 0 NA Intergenic Intergenic -13917 ENSMUSG00000082888.1 ENSMUSG00000082888 ENSMUST00000119221 Gm12934 processed_pseudogene Interval_77161 chr17 86983756 86984184 + 0 NA intron (ENSMUSG00000024143.15, intron 3 of 4) protein_coding-intron (ENSMUSG00000024143.15, intron 2 of 4) -10625 ENSMUSG00000024143.15 ENSMUSG00000024143 ENSMUST00000234309 Rhoq protein_coding Interval_34901 chr12 13183944 13185364 + 0 NA Intergenic Intergenic -20891 ENSMUSG00000064717.1 ENSMUSG00000064717 ENSMUST00000082783 Gm24208 snoRNA Interval_150913 chr7 116317512 116317712 + 0 NA Intergenic Intergenic 15645 ENSMUSG00000064741.1 ENSMUSG00000064741 ENSMUST00000082807 Snord14a snoRNA Interval_70312 chr17 8408504 8409482 + 0 NA intron (ENSMUSG00000058159.14, intron 6 of 9) protein_coding-intron (ENSMUSG00000058159.14, intron 5 of 10) -24333 ENSMUSG00000116704.1 ENSMUSG00000116704 ENSMUST00000231828 Gm5491 processed_pseudogene Interval_19416 chr10 99073819 99075380 + 0 NA Intergenic Intergenic -33185 ENSMUSG00000019952.15 ENSMUSG00000019952 ENSMUST00000162847 Poc1b protein_coding Interval_98155 chr2 148846941 148847512 + 0 NA intron (ENSMUSG00000027446.2, intron 2 of 2) protein_coding-intron (ENSMUSG00000027446.2, intron 2 of 2) 12079 ENSMUSG00000027445.3 ENSMUSG00000027445 ENSMUST00000028935 Cst9 protein_coding Interval_139225 chr6 97310813 97312754 + 0 NA exon (ENSMUSG00000030064.16, exon 1 of 3) protein_coding-exon (ENSMUSG00000030064.16, exon 1 of 3) -20522 ENSMUSG00000030064.16 ENSMUSG00000030064 ENSMUST00000124050 Frmd4b protein_coding Interval_142685 chr6 145002647 145002927 + 0 NA intron (ENSMUSG00000030268.17, intron 10 of 10) protein_coding-intron (ENSMUSG00000030268.17, intron 10 of 10) 35401 ENSMUSG00000088867.1 ENSMUSG00000088867 ENSMUST00000158242 Gm23071 rRNA Interval_72082 chr17 27908818 27910290 + 0 NA promoter-TSS (ENSMUSG00000024218.13) protein_coding-promoter-TSS (ENSMUSG00000024218.13) -415 ENSMUSG00000024218.13 ENSMUSG00000024218 ENSMUST00000233681 Taf11 protein_coding Interval_140991 chr6 123931052 123932252 + 0 NA TTS (ENSMUSG00000108198.1) unprocessed_pseudogene-TTS (ENSMUSG00000108198.1) 7841 ENSMUSG00000108198.1 ENSMUSG00000108198 ENSMUST00000204775 Gm44823 unprocessed_pseudogene Interval_93944 chr2 79774439 79774694 + 0 NA intron (ENSMUSG00000034683.12, intron 4 of 4) protein_coding-intron (ENSMUSG00000034683.12, intron 2 of 2) -12025 ENSMUSG00000034683.12 ENSMUSG00000034683 ENSMUST00000144432 Ppp1r1c protein_coding Interval_19221 chr10 95585163 95585964 + 0 NA Intergenic Intergenic -18229 ENSMUSG00000089618.1 ENSMUSG00000089618 ENSMUST00000158993 Gm23776 misc_RNA Interval_159983 chr8 105579856 105581287 + 0 NA promoter-TSS (ENSMUSG00000005705.10) protein_coding-promoter-TSS (ENSMUSG00000005705.10) -726 ENSMUSG00000005705.10 ENSMUSG00000005705 ENSMUST00000194654 Agrp protein_coding Interval_116201 chr4 108655663 108655879 + 0 NA intron (ENSMUSG00000034557.14, intron 14 of 17) protein_coding-intron (ENSMUSG00000034557.14, intron 12 of 15) -18330 ENSMUSG00000091985.1 ENSMUSG00000091985 ENSMUST00000170933 Gm17354 lincRNA Interval_35577 chr12 24974642 24975714 + 0 NA intron (ENSMUSG00000113774.1, intron 1 of 1) protein_coding-intron (ENSMUSG00000036333.11, intron 1 of 31) 185 ENSMUSG00000036333.11 ENSMUSG00000036333 ENSMUST00000222481 Kidins220 protein_coding Interval_145074 chr7 29898500 29898865 + 0 NA intron (ENSMUSG00000062040.14, intron 1 of 1) protein_coding-intron (ENSMUSG00000062040.14, intron 4 of 4) 181 ENSMUSG00000062040.14 ENSMUSG00000062040 ENSMUST00000160411 Zfp27 protein_coding Interval_46192 chr13 62392878 62393941 + 0 NA Intergenic Intergenic -5476 ENSMUSG00000113865.1 ENSMUSG00000113865 ENSMUST00000221812 Selenok-ps6 processed_pseudogene Interval_78152 chr18 9407622 9407948 + 0 NA intron (ENSMUSG00000024286.8, intron 1 of 7) protein_coding-intron (ENSMUSG00000024286.8, intron 1 of 9) 29065 ENSMUSG00000117448.1 ENSMUSG00000117448 ENSMUST00000234877 Gm50055 TEC Interval_140966 chr6 123263752 123264110 + 0 NA intron (ENSMUSG00000030144.4, intron 1 of 5) protein_coding-intron (ENSMUSG00000030144.4, intron 1 of 5) 1820 ENSMUSG00000030144.4 ENSMUSG00000030144 ENSMUST00000203421 Clec4d protein_coding Interval_99797 chr2 164960761 164961907 + 0 NA intron (ENSMUSG00000017740.17, intron 1 of 25) protein_coding-intron (ENSMUSG00000017740.17, intron 1 of 3) -6907 ENSMUSG00000017740.17 ENSMUSG00000017740 ENSMUST00000137302 Slc12a5 protein_coding Interval_66313 chr16 33074366 33074573 + 0 NA intron (ENSMUSG00000022802.2, intron 6 of 16) protein_coding-intron (ENSMUSG00000022802.2, intron 6 of 16) 6359 ENSMUSG00000077844.1 ENSMUSG00000077844 ENSMUST00000101027 Gm22231 miRNA Interval_82318 chr18 70598584 70600191 + 0 NA intron (ENSMUSG00000024513.16, intron 3 of 5) protein_coding-intron (ENSMUSG00000024513.16, intron 3 of 6) 6132 ENSMUSG00000024513.16 ENSMUSG00000024513 ENSMUST00000128555 Mbd2 protein_coding Interval_111734 chr4 26953080 26953282 + 0 NA Intergenic Intergenic 173328 ENSMUSG00000083447.1 ENSMUSG00000083447 ENSMUST00000120562 Gm11904 processed_pseudogene Interval_141942 chr6 135691725 135692011 + 0 NA Intergenic Intergenic 32955 ENSMUSG00000107396.2 ENSMUSG00000107396 ENSMUST00000203439 4930425L21Rik lincRNA Interval_164853 chr9 42460299 42460673 + 0 NA intron (ENSMUSG00000037287.15, intron 1 of 2) protein_coding-intron (ENSMUSG00000037287.15, intron 1 of 7) 11753 ENSMUSG00000037287.15 ENSMUSG00000037287 ENSMUST00000213428 Tbcel protein_coding Interval_129712 chr5 121912481 121912810 + 0 NA intron (ENSMUSG00000042589.18, intron 2 of 20) protein_coding-intron (ENSMUSG00000042589.18, intron 4 of 22) -46582 ENSMUSG00000042589.18 ENSMUSG00000042589 ENSMUST00000125267 Cux2 protein_coding Interval_122369 chr5 21735356 21737823 + 0 NA promoter-TSS (ENSMUSG00000029017.13) protein_coding-promoter-TSS (ENSMUSG00000029017.13) 11924 ENSMUSG00000083006.1 ENSMUSG00000083006 ENSMUST00000118032 Gm15715 processed_pseudogene Interval_121686 chr5 5282608 5282840 + 0 NA intron (ENSMUSG00000028926.15, intron 1 of 2) protein_coding-intron (ENSMUSG00000028926.15, intron 2 of 14) 24278 ENSMUSG00000106202.1 ENSMUSG00000106202 ENSMUST00000198021 Gm43727 sense_intronic Interval_67184 chr16 44201202 44201510 + 0 NA intron (ENSMUSG00000068284.14, intron 4 of 7) protein_coding-intron (ENSMUSG00000068284.14, intron 4 of 6) 27959 ENSMUSG00000068284.14 ENSMUSG00000068284 ENSMUST00000169582 Usf3 protein_coding Interval_17973 chr10 81153492 81155114 + 0 NA TTS (ENSMUSG00000004934.14) protein_coding-TTS (ENSMUSG00000004934.14) 3708 ENSMUSG00000004934.14 ENSMUSG00000004934 ENSMUST00000129549 Pias4 protein_coding Interval_79916 chr18 35898904 35900135 + 0 NA Intergenic Intergenic -9182 ENSMUSG00000118358.1 ENSMUSG00000118358 ENSMUST00000237036 Gm36315 lincRNA Interval_123786 chr5 35505579 35506048 + 0 NA intron (ENSMUSG00000036596.6, intron 9 of 10) protein_coding-intron (ENSMUSG00000036596.6, intron 9 of 10) 19758 ENSMUSG00000036596.6 ENSMUSG00000036596 ENSMUST00000132959 Cpz protein_coding Interval_49734 chr13 114334189 114334623 + 0 NA intron (ENSMUSG00000021764.8, intron 1 of 3) protein_coding-intron (ENSMUSG00000021764.8, intron 2 of 4) -50025 ENSMUSG00000114707.1 ENSMUSG00000114707 ENSMUST00000224003 Gm47558 TEC Interval_121150 chr4 153545440 153545992 + 0 NA Intergenic Intergenic -63537 ENSMUSG00000039546.9 ENSMUSG00000039546 ENSMUST00000149177 Ajap1 protein_coding Interval_21999 chr11 5693682 5695748 + 0 NA Intergenic Intergenic 12972 ENSMUSG00000020477.10 ENSMUSG00000020477 ENSMUST00000123697 Mrps24 protein_coding Interval_48689 chr13 101344218 101344644 + 0 NA intron (ENSMUSG00000100733.2, intron 5 of 8) lincRNA-intron (ENSMUSG00000100733.2, intron 5 of 8) -4321 ENSMUSG00000114295.1 ENSMUSG00000114295 ENSMUST00000226018 Gm2534 processed_pseudogene Interval_154771 chr8 23237235 23238201 + 0 NA promoter-TSS (ENSMUSG00000031546.6) protein_coding-promoter-TSS (ENSMUSG00000031546.6) -59 ENSMUSG00000031546.6 ENSMUSG00000031546 ENSMUST00000033950 Gins4 protein_coding Interval_18299 chr10 84704764 84705994 + 0 NA intron (ENSMUSG00000034453.8, intron 23 of 27) protein_coding-intron (ENSMUSG00000034453.8, intron 23 of 27) -56859 ENSMUSG00000020037.15 ENSMUSG00000020037 ENSMUST00000095388 Rfx4 protein_coding Interval_117328 chr4 123012552 123012989 + 0 NA Intergenic Intergenic -3827 ENSMUSG00000028653.16 ENSMUSG00000028653 ENSMUST00000141855 Trit1 protein_coding Interval_34536 chr12 4941525 4942420 + 0 NA exon (ENSMUSG00000052812.5, exon 5 of 31) protein_coding-exon (ENSMUSG00000052812.5, exon 5 of 31) -34708 ENSMUSG00000020634.12 ENSMUSG00000020634 ENSMUST00000141360 Ubxn2a protein_coding Interval_129225 chr5 118310690 118312050 + 0 NA Intergenic Intergenic 44921 ENSMUSG00000095477.1 ENSMUSG00000095477 ENSMUST00000104098 Gm25076 snoRNA Interval_168066 chr9 75815025 75815373 + 0 NA intron (ENSMUSG00000032179.7, intron 1 of 6) protein_coding-intron (ENSMUSG00000032179.7, intron 1 of 6) -12823 ENSMUSG00000032179.7 ENSMUSG00000032179 ENSMUST00000137213 Bmp5 protein_coding Interval_18908 chr10 93027240 93027547 + 0 NA intron (ENSMUSG00000020014.17, intron 17 of 67) protein_coding-intron (ENSMUSG00000020014.17, intron 17 of 66) 5569 ENSMUSG00000020014.17 ENSMUSG00000020014 ENSMUST00000171781 Cfap54 protein_coding Interval_118977 chr4 134812853 134814607 + 0 NA intron (ENSMUSG00000028826.14, intron 7 of 8) protein_coding-intron (ENSMUSG00000028826.14, intron 6 of 10) -2517 ENSMUSG00000028826.14 ENSMUSG00000028826 ENSMUST00000136113 Maco1 protein_coding Interval_46793 chr13 70604046 70605279 + 0 NA exon (ENSMUSG00000034525.7, exon 13 of 19) protein_coding-exon (ENSMUSG00000034525.7, exon 13 of 19) -8409 ENSMUSG00000034525.7 ENSMUSG00000034525 ENSMUST00000222568 Ice1 protein_coding Interval_138267 chr6 86732437 86733840 + 0 NA promoter-TSS (ENSMUSG00000107961.1) lincRNA-promoter-TSS (ENSMUSG00000107961.1) -351 ENSMUSG00000107961.1 ENSMUSG00000107961 ENSMUST00000204551 Gm44036 lincRNA Interval_95958 chr2 118682625 118683233 + 0 NA intron (ENSMUSG00000074923.10, intron 2 of 7) protein_coding-intron (ENSMUSG00000074923.10, intron 3 of 10) 19167 ENSMUSG00000074923.10 ENSMUSG00000074923 ENSMUST00000132577 Pak6 protein_coding Interval_163850 chr9 27134544 27134787 + 0 NA intron (ENSMUSG00000031990.15, intron 1 of 2) protein_coding-intron (ENSMUSG00000031990.15, intron 1 of 8) -8115 ENSMUSG00000031990.15 ENSMUSG00000031990 ENSMUST00000213682 Jam3 protein_coding Interval_41129 chr12 111360867 111361201 + 0 NA intron (ENSMUSG00000021279.5, intron 2 of 4) protein_coding-intron (ENSMUSG00000021279.5, intron 1 of 36) -45775 ENSMUSG00000087075.2 ENSMUSG00000087075 ENSMUST00000150384 Lbhd2 protein_coding Interval_8370 chr1 138311441 138312499 + 0 NA Intergenic Intergenic 38232 ENSMUSG00000026394.5 ENSMUSG00000026394 ENSMUST00000027643 Atp6v1g3 protein_coding Interval_103380 chr3 41048506 41048743 + 0 NA Intergenic Intergenic 22046 ENSMUSG00000049940.7 ENSMUSG00000049940 ENSMUST00000124636 Pgrmc2 protein_coding Interval_170396 chr9 107647106 107647345 + 0 NA Intergenic Intergenic -14686 ENSMUSG00000102324.1 ENSMUSG00000102324 ENSMUST00000195284 Gm19721 TEC Interval_133463 chr6 5382673 5384315 + 0 NA intron (ENSMUSG00000042607.15, intron 1 of 5) protein_coding-intron (ENSMUSG00000042607.15, intron 1 of 5) -6933 ENSMUSG00000042607.15 ENSMUSG00000042607 ENSMUST00000183358 Asb4 protein_coding Interval_135329 chr6 38364061 38364366 + 0 NA Intergenic Intergenic 1689 ENSMUSG00000106836.1 ENSMUSG00000106836 ENSMUST00000201250 Gm43578 processed_pseudogene Interval_73192 chr17 35502380 35506296 + 0 NA Intergenic Intergenic -4483 ENSMUSG00000024406.16 ENSMUSG00000024406 ENSMUST00000174782 Pou5f1 protein_coding Interval_149073 chr7 92893271 92893923 + 0 NA intron (ENSMUSG00000061119.7, intron 1 of 1) protein_coding-intron (ENSMUSG00000061119.7, intron 1 of 8) -8582 ENSMUSG00000109268.1 ENSMUSG00000109268 ENSMUST00000208883 9530078K11Rik TEC Interval_69268 chr16 91810974 91812282 + 0 NA intron (ENSMUSG00000022957.20, intron 2 of 2) protein_coding-intron (ENSMUSG00000022957.20, intron 8 of 28) -83031 ENSMUSG00000058240.14 ENSMUSG00000058240 ENSMUST00000123751 Cryzl1 protein_coding Interval_33851 chr11 118998342 118999924 + 0 NA Intergenic Intergenic 10917 ENSMUSG00000046697.17 ENSMUSG00000046697 ENSMUST00000106273 Enpp7 protein_coding Interval_33820 chr11 118729152 118729843 + 0 NA intron (ENSMUSG00000025576.17, intron 2 of 14) protein_coding-intron (ENSMUSG00000025576.17, intron 2 of 14) -61875 ENSMUSG00000085059.1 ENSMUSG00000085059 ENSMUST00000146016 Gm11750 lincRNA Interval_66494 chr16 34303155 34304363 + 0 NA intron (ENSMUSG00000061751.16, intron 8 of 48) protein_coding-intron (ENSMUSG00000061751.16, intron 9 of 59) -207731 ENSMUSG00000061751.16 ENSMUSG00000061751 ENSMUST00000132569 Kalrn protein_coding Interval_169211 chr9 95540159 95541095 + 0 NA Intergenic Intergenic -16605 ENSMUSG00000110827.1 ENSMUSG00000110827 ENSMUST00000217220 Gm32281 lincRNA Interval_122080 chr5 16547441 16547756 + 0 NA Intergenic Intergenic -5981 ENSMUSG00000028864.7 ENSMUSG00000028864 ENSMUST00000196645 Hgf protein_coding Interval_129992 chr5 123582907 123583542 + 0 NA intron (ENSMUSG00000049550.17, intron 9 of 11) protein_coding-intron (ENSMUSG00000049550.17, intron 22 of 24) -21237 ENSMUSG00000104704.1 ENSMUSG00000104704 ENSMUST00000197472 Gm43133 TEC Interval_158211 chr8 79827427 79827641 + 0 NA Intergenic Intergenic -23923 ENSMUSG00000110048.1 ENSMUSG00000110048 ENSMUST00000209386 Gm45433 processed_pseudogene Interval_44452 chr13 44906227 44906430 + 0 NA exon (ENSMUSG00000038518.15, exon 9 of 19) protein_coding-exon (ENSMUSG00000038518.15, exon 9 of 19) -68045 ENSMUSG00000088189.1 ENSMUSG00000088189 ENSMUST00000157564 Gm22213 snoRNA Interval_17072 chr10 71130211 71130948 + 0 NA intron (ENSMUSG00000014329.14, intron 1 of 20) protein_coding-intron (ENSMUSG00000014329.14, intron 1 of 21) -17581 ENSMUSG00000112566.1 ENSMUSG00000112566 ENSMUST00000217960 Gm32025 processed_pseudogene Interval_77266 chr17 87664166 87665964 + 0 NA Intergenic Intergenic 29086 ENSMUSG00000045394.9 ENSMUSG00000045394 ENSMUST00000234623 Epcam protein_coding Interval_38105 chr12 75675786 75676297 + 0 NA Intergenic Intergenic -6514 ENSMUSG00000045690.8 ENSMUSG00000045690 ENSMUST00000187307 Wdr89 protein_coding Interval_158851 chr8 87229083 87229308 + 0 NA intron (ENSMUSG00000098257.1, intron 2 of 4) lincRNA-intron (ENSMUSG00000098257.1, intron 2 of 4) 26169 ENSMUSG00000098257.1 ENSMUSG00000098257 ENSMUST00000183344 Gm27169 lincRNA Interval_108429 chr3 127086551 127087287 + 0 NA intron (ENSMUSG00000032826.19, intron 2 of 2) protein_coding-intron (ENSMUSG00000032826.19, intron 4 of 14) -34873 ENSMUSG00000105322.1 ENSMUSG00000105322 ENSMUST00000200275 Gm43751 TEC Interval_112386 chr4 40981601 40981815 + 0 NA intron (ENSMUSG00000028423.15, intron 2 of 23) protein_coding-intron (ENSMUSG00000028423.15, intron 2 of 15) -11987 ENSMUSG00000092862.1 ENSMUSG00000092862 ENSMUST00000175121 Mir3094 miRNA Interval_75412 chr17 66424538 66425461 + 0 NA intron (ENSMUSG00000052105.17, intron 3 of 15) protein_coding-intron (ENSMUSG00000052105.17, intron 3 of 13) -11015 ENSMUSG00000093686.1 ENSMUSG00000093686 ENSMUST00000177415 Gm4705 processed_pseudogene Interval_122838 chr5 25956524 25957455 + 0 NA exon (ENSMUSG00000104651.1, exon 1 of 1) processed_pseudogene-exon (ENSMUSG00000104651.1, exon 1 of 1) 363 ENSMUSG00000104651.1 ENSMUSG00000104651 ENSMUST00000199646 Gm21168 processed_pseudogene Interval_4418 chr1 74031013 74031734 + 0 NA intron (ENSMUSG00000055322.16, intron 3 of 32) protein_coding-intron (ENSMUSG00000055322.16, intron 3 of 34) 67303 ENSMUSG00000055322.16 ENSMUSG00000055322 ENSMUST00000190599 Tns1 protein_coding Interval_94648 chr2 93000124 93000291 + 0 NA intron (ENSMUSG00000075028.12, intron 4 of 7) protein_coding-intron (ENSMUSG00000075028.12, intron 3 of 5) -30237 ENSMUSG00000075027.10 ENSMUSG00000075027 ENSMUST00000145926 4631405J19Rik antisense Interval_85171 chr19 23321914 23322087 + 0 NA intron (ENSMUSG00000033207.7, intron 10 of 12) protein_coding-intron (ENSMUSG00000033207.7, intron 11 of 13) 25671 ENSMUSG00000096249.1 ENSMUSG00000096249 ENSMUST00000104059 Gm24263 snRNA Interval_109223 chr3 138011878 138012764 + 0 NA intron (ENSMUSG00000105296.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000105296.1, intron 1 of 2) 11382 ENSMUSG00000105296.1 ENSMUSG00000105296 ENSMUST00000199386 Gm19708 lincRNA Interval_83196 chr18 82691392 82693011 + 0 NA promoter-TSS (ENSMUSG00000097141.2) TEC-promoter-TSS (ENSMUSG00000097141.2) -83 ENSMUSG00000097141.2 ENSMUSG00000097141 ENSMUST00000181931 Gm10524 TEC Interval_10506 chr1 171379773 171380615 + 0 NA exon (ENSMUSG00000006411.12, exon 2 of 9) protein_coding-exon (ENSMUSG00000006411.12, exon 2 of 9) -8805 ENSMUSG00000048865.16 ENSMUSG00000048865 ENSMUST00000194914 Arhgap30 protein_coding Interval_164472 chr9 37284779 37285031 + 0 NA intron (ENSMUSG00000034303.8, intron 12 of 15) protein_coding-intron (ENSMUSG00000034303.8, intron 12 of 15) 9645 ENSMUSG00000111738.1 ENSMUSG00000111738 ENSMUST00000215832 Gm18329 processed_pseudogene Interval_76077 chr17 74742628 74742810 + 0 NA intron (ENSMUSG00000024078.7, intron 6 of 19) protein_coding-intron (ENSMUSG00000024078.7, intron 6 of 19) -27347 ENSMUSG00000024078.7 ENSMUSG00000024078 ENSMUST00000234264 Ttc27 protein_coding Interval_86424 chr19 40384569 40384969 + 0 NA intron (ENSMUSG00000025006.18, intron 5 of 26) protein_coding-intron (ENSMUSG00000025006.18, intron 3 of 21) -7895 ENSMUSG00000025006.18 ENSMUSG00000025006 ENSMUST00000225293 Sorbs1 protein_coding Interval_56132 chr14 106439442 106439784 + 0 NA intron (ENSMUSG00000099794.1, intron 2 of 3) lincRNA-intron (ENSMUSG00000099794.1, intron 2 of 3) 46879 ENSMUSG00000099794.1 ENSMUSG00000099794 ENSMUST00000186643 1700128A07Rik lincRNA Interval_87718 chr19 55384823 55385021 + 0 NA TTS (ENSMUSG00000024983.10) protein_coding-TTS (ENSMUSG00000024983.10) 68595 ENSMUSG00000024983.10 ENSMUSG00000024983 ENSMUST00000224396 Vti1a protein_coding Interval_90258 chr2 29368203 29369069 + 0 NA intron (ENSMUSG00000086994.1, intron 1 of 1) protein_coding-intron (ENSMUSG00000026799.15, intron 2 of 7) 27823 ENSMUSG00000086994.1 ENSMUSG00000086994 ENSMUST00000153600 Gm13402 antisense Interval_67681 chr16 55933780 55935014 + 0 NA promoter-TSS (ENSMUSG00000022604.18) protein_coding-promoter-TSS (ENSMUSG00000022604.18) 400 ENSMUSG00000022604.18 ENSMUSG00000022604 ENSMUST00000121703 Cep97 protein_coding Interval_65664 chr16 24971706 24972182 + 0 NA exon (ENSMUSG00000033306.15, exon 11 of 13) protein_coding-exon (ENSMUSG00000033306.15, exon 11 of 13) -87695 ENSMUSG00000096960.1 ENSMUSG00000096960 ENSMUST00000181655 A230028O05Rik lincRNA Interval_7187 chr1 127593163 127593359 + 0 NA intron (ENSMUSG00000026347.13, intron 2 of 7) protein_coding-intron (ENSMUSG00000026347.13, intron 2 of 8) 86287 ENSMUSG00000026347.13 ENSMUSG00000026347 ENSMUST00000162406 Tmem163 protein_coding Interval_129230 chr5 118334073 118334315 + 0 NA Intergenic Intergenic 63136 ENSMUSG00000106812.1 ENSMUSG00000106812 ENSMUST00000201179 Gm28563 lincRNA Interval_69386 chr16 92622588 92622972 + 0 NA intron (ENSMUSG00000022952.17, intron 3 of 4) protein_coding-intron (ENSMUSG00000022952.17, intron 6 of 7) 9966 ENSMUSG00000097139.3 ENSMUSG00000097139 ENSMUST00000180989 Gm26626 antisense Interval_42252 chr13 11018234 11018499 + 0 NA Intergenic Intergenic 43943 ENSMUSG00000113673.1 ENSMUSG00000113673 ENSMUST00000221075 Gm47486 lincRNA Interval_115432 chr4 98886718 98887599 + 0 NA Intergenic Intergenic 31544 ENSMUSG00000084188.1 ENSMUSG00000084188 ENSMUST00000117920 Gm12851 processed_pseudogene Interval_153900 chr8 10899049 10900023 + 0 NA promoter-TSS (ENSMUSG00000109089.1) processed_transcript-promoter-TSS (ENSMUSG00000109089.1) -401 ENSMUSG00000109089.1 ENSMUSG00000109089 ENSMUST00000207914 4833411C07Rik processed_transcript Interval_106626 chr3 97894577 97895272 + 0 NA intron (ENSMUSG00000086557.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000086557.1, intron 1 of 1) 6165 ENSMUSG00000086557.1 ENSMUSG00000086557 ENSMUST00000127317 Gm15999 lincRNA Interval_39577 chr12 91010507 91011067 + 0 NA intron (ENSMUSG00000061533.16, intron 10 of 12) protein_coding-intron (ENSMUSG00000061533.16, intron 5 of 6) 19291 ENSMUSG00000061533.16 ENSMUSG00000061533 ENSMUST00000138935 Cep128 protein_coding Interval_79595 chr18 33927259 33927539 + 0 NA intron (ENSMUSG00000024376.7, intron 2 of 2) protein_coding-intron (ENSMUSG00000024376.7, intron 2 of 23) 79567 ENSMUSG00000024376.7 ENSMUSG00000024376 ENSMUST00000237971 Epb41l4a protein_coding Interval_41363 chr12 113090177 113090403 + 0 NA Intergenic Intergenic 15512 ENSMUSG00000012211.13 ENSMUSG00000012211 ENSMUST00000155492 Tex22 protein_coding Interval_154525 chr8 18944785 18945157 + 0 NA intron (ENSMUSG00000039814.15, intron 2 of 6) protein_coding-intron (ENSMUSG00000039814.15, intron 2 of 6) 5945 ENSMUSG00000039814.15 ENSMUSG00000039814 ENSMUST00000143913 Xkr5 protein_coding Interval_1241 chr1 17980795 17981184 + 0 NA Intergenic Intergenic -12824 ENSMUSG00000099591.1 ENSMUSG00000099591 ENSMUST00000185706 Gm17969 processed_pseudogene Interval_75894 chr17 72828096 72829115 + 0 NA Intergenic Intergenic -8931 ENSMUSG00000039770.6 ENSMUSG00000039770 ENSMUST00000233662 Ypel5 protein_coding Interval_58743 chr15 37668579 37668820 + 0 NA intron (ENSMUSG00000051359.15, intron 1 of 2) protein_coding-intron (ENSMUSG00000051359.15, intron 1 of 6) -32005 ENSMUSG00000086125.1 ENSMUSG00000086125 ENSMUST00000136305 Gm15942 antisense Interval_27350 chr11 66893510 66893943 + 0 NA Intergenic Intergenic -18255 ENSMUSG00000048070.4 ENSMUSG00000048070 ENSMUST00000123434 Pirt protein_coding Interval_46559 chr13 67154733 67155505 + 0 NA Intergenic Intergenic -9753 ENSMUSG00000114568.1 ENSMUSG00000114568 ENSMUST00000223605 Gm48732 lincRNA Interval_12369 chr1 192712194 192712412 + 0 NA intron (ENSMUSG00000037375.16, intron 7 of 11) protein_coding-intron (ENSMUSG00000037375.16, intron 7 of 11) -33268 ENSMUSG00000094131.1 ENSMUSG00000094131 ENSMUST00000082947 Gm22265 snRNA Interval_59247 chr15 49723775 49724581 + 0 NA Intergenic Intergenic 185983 ENSMUSG00000065760.1 ENSMUSG00000065760 ENSMUST00000083826 Gm23848 snRNA Interval_143740 chr7 15998150 15999328 + 0 NA intron (ENSMUSG00000070808.4, intron 2 of 14) protein_coding-intron (ENSMUSG00000070808.4, intron 1 of 13) 26856 ENSMUSG00000109984.1 ENSMUSG00000109984 ENSMUST00000210035 Gm38948 lincRNA Interval_79898 chr18 35793926 35794158 + 0 NA intron (ENSMUSG00000091896.8, intron 2 of 2) protein_coding-intron (ENSMUSG00000091896.8, intron 2 of 7) -5800 ENSMUSG00000117841.1 ENSMUSG00000117841 ENSMUST00000235919 Gm50371 processed_transcript Interval_9889 chr1 163840446 163840638 + 0 NA intron (ENSMUSG00000026585.13, intron 10 of 20) protein_coding-intron (ENSMUSG00000026585.13, intron 10 of 19) 60959 ENSMUSG00000026585.13 ENSMUSG00000026585 ENSMUST00000027877 Kifap3 protein_coding Interval_107880 chr3 116529391 116530379 + 0 NA intron (ENSMUSG00000000340.10, intron 2 of 3) protein_coding-intron (ENSMUSG00000000340.10, intron 3 of 10) -1307 ENSMUSG00000082394.1 ENSMUSG00000082394 ENSMUST00000117197 Gm4596 processed_pseudogene Interval_116532 chr4 115085514 115085984 + 0 NA Intergenic Intergenic -2959 ENSMUSG00000028716.15 ENSMUSG00000028716 ENSMUST00000146578 Pdzk1ip1 protein_coding Interval_85718 chr19 30012545 30013081 + 0 NA Intergenic Intergenic 9023 ENSMUSG00000024815.5 ENSMUSG00000024815 ENSMUST00000025727 Trpd52l3 protein_coding Interval_112199 chr4 35577776 35578865 + 0 NA Intergenic Intergenic 142106 ENSMUSG00000083851.1 ENSMUSG00000083851 ENSMUST00000117931 Gm12365 processed_pseudogene Interval_118498 chr4 132121486 132122141 + 0 NA intron (ENSMUSG00000050511.1, intron 1 of 2) protein_coding-intron (ENSMUSG00000050511.1, intron 1 of 2) -12450 ENSMUSG00000102796.1 ENSMUSG00000102796 ENSMUST00000194907 Gm37711 TEC Interval_75223 chr17 64893747 64894904 + 0 NA Intergenic Intergenic 18124 ENSMUSG00000117203.1 ENSMUSG00000117203 ENSMUST00000233516 Gm4701 processed_pseudogene Interval_57733 chr15 17266146 17267914 + 0 NA Intergenic Intergenic -190091 ENSMUSG00000115182.1 ENSMUSG00000115182 ENSMUST00000227358 Gm49128 lincRNA Interval_109641 chr3 145642626 145643267 + 0 NA Intergenic Intergenic 7035 ENSMUSG00000028195.4 ENSMUSG00000028195 ENSMUST00000029846 Ccn1 protein_coding Interval_9660 chr1 160812173 160813232 + 0 NA Intergenic Intergenic 14020 ENSMUSG00000102852.1 ENSMUSG00000102852 ENSMUST00000195784 Gm37083 lincRNA Interval_21300 chr10 127729068 127729341 + 0 NA TTS (ENSMUSG00000025400.11) protein_coding-TTS (ENSMUSG00000025400.11) 1357 ENSMUSG00000025400.11 ENSMUSG00000025400 ENSMUST00000218048 Tac2 protein_coding Interval_41359 chr12 113061067 113061615 + 0 NA promoter-TSS (ENSMUSG00000021143.10) protein_coding-promoter-TSS (ENSMUSG00000021143.10) 2097 ENSMUSG00000104729.1 ENSMUSG00000104729 ENSMUST00000197963 Gm44471 miRNA Interval_146086 chr7 43782445 43783345 + 0 NA exon (ENSMUSG00000030693.10, exon 3 of 6) protein_coding-exon (ENSMUSG00000030693.10, exon 3 of 6) 1860 ENSMUSG00000030693.10 ENSMUSG00000030693 ENSMUST00000014058 Klk10 protein_coding Interval_3453 chr1 58468224 58469154 + 0 NA intron (ENSMUSG00000026037.14, intron 12 of 14) protein_coding-intron (ENSMUSG00000026037.14, intron 15 of 17) -2068 ENSMUSG00000094245.1 ENSMUSG00000094245 ENSMUST00000179823 Gm23966 snRNA Interval_109714 chr3 146234265 146234562 + 0 NA intron (ENSMUSG00000036832.5, intron 1 of 2) protein_coding-intron (ENSMUSG00000036832.5, intron 1 of 2) 13450 ENSMUSG00000036832.5 ENSMUSG00000036832 ENSMUST00000039164 Lpar3 protein_coding Interval_161884 chr8 123431018 123431217 + 0 NA intron (ENSMUSG00000001482.15, intron 1 of 3) protein_coding-intron (ENSMUSG00000092329.1, intron 1 of 15) 7590 ENSMUSG00000001482.15 ENSMUSG00000001482 ENSMUST00000212827 Def8 protein_coding Interval_119100 chr4 135555400 135555995 + 0 NA intron (ENSMUSG00000037188.7, intron 7 of 15) protein_coding-intron (ENSMUSG00000037188.7, intron 7 of 15) 17933 ENSMUSG00000037188.7 ENSMUSG00000037188 ENSMUST00000105855 Grhl3 protein_coding Interval_88586 chr2 6384052 6384583 + 0 NA intron (ENSMUSG00000039046.15, intron 1 of 13) protein_coding-intron (ENSMUSG00000039046.15, intron 1 of 13) -36605 ENSMUSG00000039046.15 ENSMUSG00000039046 ENSMUST00000150515 Usp6nl protein_coding Interval_77178 chr17 87124621 87125878 + 0 NA intron (ENSMUSG00000037104.9, intron 2 of 2) protein_coding-intron (ENSMUSG00000037104.9, intron 2 of 2) 17558 ENSMUSG00000037104.9 ENSMUSG00000037104 ENSMUST00000234421 Socs5 protein_coding Interval_80874 chr18 49788722 49788946 + 0 NA Intergenic Intergenic 29124 ENSMUSG00000100134.1 ENSMUSG00000100134 ENSMUST00000186872 1700065O20Rik lincRNA Interval_151409 chr7 122149641 122150055 + 0 NA TTS (ENSMUSG00000030868.6) protein_coding-TTS (ENSMUSG00000030868.6) 6039 ENSMUSG00000030868.6 ENSMUSG00000030868 ENSMUST00000176295 Dctn5 protein_coding Interval_77965 chr18 6192764 6192956 + 0 NA Intergenic Intergenic -21053 ENSMUSG00000091165.1 ENSMUSG00000091165 ENSMUST00000168187 Gm17036 antisense Interval_101640 chr3 8451296 8452209 + 0 NA Intergenic Intergenic 11283 ENSMUSG00000102463.1 ENSMUSG00000102463 ENSMUST00000194834 1700003N22Rik processed_pseudogene Interval_119720 chr4 139469854 139470695 + 0 NA TTS (ENSMUSG00000066036.14) protein_coding-TTS (ENSMUSG00000066036.14) 89615 ENSMUSG00000066036.14 ENSMUSG00000066036 ENSMUST00000135534 Ubr4 protein_coding Interval_106142 chr3 93620209 93620781 + 0 NA Intergenic Intergenic 9257 ENSMUSG00000103406.1 ENSMUSG00000103406 ENSMUST00000193248 Gm5541 unprocessed_pseudogene Interval_129991 chr5 123579265 123579667 + 0 NA promoter-TSS (ENSMUSG00000049550.17) protein_coding-promoter-TSS (ENSMUSG00000049550.17) -17479 ENSMUSG00000104704.1 ENSMUSG00000104704 ENSMUST00000197472 Gm43133 TEC Interval_67839 chr16 57616782 57617271 + 0 NA Intergenic Intergenic -10162 ENSMUSG00000022748.8 ENSMUSG00000022748 ENSMUST00000232413 Cmss1 protein_coding Interval_29449 chr11 84067880 84070343 + 0 NA promoter-TSS (ENSMUSG00000018648.15) protein_coding-promoter-TSS (ENSMUSG00000018648.15) -532 ENSMUSG00000018648.15 ENSMUSG00000018648 ENSMUST00000138208 Dusp14 protein_coding Interval_128131 chr5 111195777 111196225 + 0 NA intron (ENSMUSG00000033209.17, intron 6 of 22) protein_coding-intron (ENSMUSG00000033209.17, intron 7 of 23) -1139 ENSMUSG00000105027.1 ENSMUSG00000105027 ENSMUST00000197532 Gm43676 TEC Interval_62096 chr15 86496728 86497068 + 0 NA exon (ENSMUSG00000051864.10, exon 13 of 13) protein_coding-exon (ENSMUSG00000051864.10, exon 13 of 13) -21800 ENSMUSG00000115918.1 ENSMUSG00000115918 ENSMUST00000229685 A930001M01Rik antisense Interval_21061 chr10 125763899 125764959 + 0 NA Intergenic Intergenic -201805 ENSMUSG00000020105.9 ENSMUSG00000020105 ENSMUST00000219974 Lrig3 protein_coding Interval_171880 chr9 121985045 121985352 + 0 NA intron (ENSMUSG00000066235.7, intron 1 of 1) protein_coding-intron (ENSMUSG00000066235.7, intron 1 of 1) 10815 ENSMUSG00000066235.7 ENSMUSG00000066235 ENSMUST00000215008 Pomgnt2 protein_coding Interval_93074 chr2 69954669 69955121 + 0 NA intron (ENSMUSG00000044308.17, intron 17 of 38) protein_coding-intron (ENSMUSG00000044308.17, intron 17 of 38) -33891 ENSMUSG00000044308.17 ENSMUSG00000044308 ENSMUST00000123890 Ubr3 protein_coding Interval_125622 chr5 72828277 72830392 + 0 NA intron (ENSMUSG00000029217.16, intron 1 of 2) protein_coding-intron (ENSMUSG00000029217.16, intron 1 of 18) 15115 ENSMUSG00000029217.16 ENSMUSG00000029217 ENSMUST00000202547 Tec protein_coding Interval_90538 chr2 31028419 31028983 + 0 NA exon (ENSMUSG00000075415.13, exon 14 of 14) protein_coding-exon (ENSMUSG00000075415.13, exon 14 of 14) 46367 ENSMUSG00000026854.16 ENSMUSG00000026854 ENSMUST00000127776 Usp20 protein_coding Interval_82824 chr18 77231231 77232485 + 0 NA intron (ENSMUSG00000025425.18, intron 2 of 7) protein_coding-intron (ENSMUSG00000025425.18, intron 2 of 7) -12531 ENSMUSG00000082784.1 ENSMUSG00000082784 ENSMUST00000118893 Gm15957 processed_pseudogene Interval_70497 chr17 11013934 11014225 + 0 NA intron (ENSMUSG00000023826.16, intron 1 of 10) protein_coding-intron (ENSMUSG00000023826.16, intron 1 of 6) 75389 ENSMUSG00000100402.1 ENSMUSG00000100402 ENSMUST00000190466 Gm28505 antisense Interval_83524 chr18 88837919 88839809 + 0 NA intron (ENSMUSG00000056153.15, intron 2 of 7) protein_coding-intron (ENSMUSG00000056153.15, intron 2 of 7) -6387 ENSMUSG00000117948.1 ENSMUSG00000117948 ENSMUST00000237769 Gm6409 processed_pseudogene Interval_88268 chr2 3118014 3119104 + 0 NA promoter-TSS (ENSMUSG00000050530.14) protein_coding-promoter-TSS (ENSMUSG00000050530.14) 177 ENSMUSG00000050530.14 ENSMUSG00000050530 ENSMUST00000062934 Fam171a1 protein_coding Interval_143381 chr7 6246385 6247176 + 0 NA Intergenic Intergenic -13756 ENSMUSG00000053367.15 ENSMUSG00000053367 ENSMUST00000155248 Epp13 protein_coding Interval_17475 chr10 77126640 77126876 + 0 NA intron (ENSMUSG00000001435.15, intron 2 of 41) protein_coding-intron (ENSMUSG00000001435.15, intron 2 of 41) -10342 ENSMUSG00000112612.1 ENSMUSG00000112612 ENSMUST00000218871 Gm7775 processed_pseudogene Interval_35027 chr12 16733706 16734661 + 0 NA intron (ENSMUSG00000036523.16, intron 5 of 34) protein_coding-intron (ENSMUSG00000036523.16, intron 3 of 32) 33040 ENSMUSG00000105567.1 ENSMUSG00000105567 ENSMUST00000199946 Gm44305 miRNA Interval_20824 chr10 121326297 121326570 + 0 NA intron (ENSMUSG00000052302.6, intron 2 of 5) protein_coding-intron (ENSMUSG00000052302.6, intron 2 of 5) -16743 ENSMUSG00000111940.1 ENSMUSG00000111940 ENSMUST00000218322 Gm4478 processed_pseudogene Interval_166395 chr9 58902937 58903601 + 0 NA intron (ENSMUSG00000032340.8, intron 19 of 27) protein_coding-intron (ENSMUSG00000032340.8, intron 19 of 28) -75982 ENSMUSG00000111846.1 ENSMUSG00000111846 ENSMUST00000216941 Gm47271 antisense Interval_118296 chr4 130126001 130127716 + 0 NA intron (ENSMUSG00000028779.16, intron 5 of 5) protein_coding-intron (ENSMUSG00000028779.16, intron 4 of 4) 10770 ENSMUSG00000028778.15 ENSMUSG00000028778 ENSMUST00000164887 Hcrtr1 protein_coding Interval_149312 chr7 97370911 97372291 + 0 NA promoter-TSS (ENSMUSG00000035704.17) protein_coding-promoter-TSS (ENSMUSG00000035704.17) -15621 ENSMUSG00000035704.17 ENSMUSG00000035704 ENSMUST00000137105 Alg8 protein_coding Interval_54549 chr14 70622715 70624958 + 0 NA intron (ENSMUSG00000022099.17, intron 1 of 14) protein_coding-intron (ENSMUSG00000022099.17, intron 1 of 15) 5163 ENSMUSG00000022099.17 ENSMUSG00000022099 ENSMUST00000226543 Dmtn protein_coding Interval_171678 chr9 120110079 120111358 + 0 NA intron (ENSMUSG00000032519.11, intron 1 of 2) protein_coding-intron (ENSMUSG00000032519.11, intron 1 of 6) -4271 ENSMUSG00000032519.11 ENSMUSG00000032519 ENSMUST00000154969 Slc25a38 protein_coding Interval_70928 chr17 16075718 16076041 + 0 NA Intergenic Intergenic -87272 ENSMUSG00000116839.1 ENSMUSG00000116839 ENSMUST00000232488 Gm49778 lincRNA Interval_2134 chr1 36640417 36640669 + 0 NA intron (ENSMUSG00000046337.17, intron 4 of 14) protein_coding-intron (ENSMUSG00000046337.17, intron 4 of 9) -23422 ENSMUSG00000077939.1 ENSMUSG00000077939 ENSMUST00000104746 Gm24133 miRNA Interval_119606 chr4 138690286 138692114 + 0 NA Intergenic Intergenic 34021 ENSMUSG00000043621.13 ENSMUSG00000043621 ENSMUST00000135156 Ubxn10 protein_coding Interval_126161 chr5 80650371 80650695 + 0 NA Intergenic Intergenic -243121 ENSMUSG00000065235.1 ENSMUSG00000065235 ENSMUST00000083301 Gm22974 snRNA Interval_41934 chr13 4776978 4777576 + 0 NA intron (ENSMUSG00000053499.4, intron 1 of 2) lincRNA-intron (ENSMUSG00000053499.4, intron 1 of 2) 5626 ENSMUSG00000053499.4 ENSMUSG00000053499 ENSMUST00000065956 Gm5444 lincRNA Interval_66160 chr16 32037557 32038004 + 0 NA intron (ENSMUSG00000022781.8, intron 7 of 14) protein_coding-intron (ENSMUSG00000022781.8, intron 7 of 14) 6220 ENSMUSG00000022781.8 ENSMUSG00000022781 ENSMUST00000125019 Pak2 protein_coding Interval_43666 chr13 34767725 34768078 + 0 NA Intergenic Intergenic 28289 ENSMUSG00000038246.7 ENSMUSG00000038246 ENSMUST00000221037 Fam50b protein_coding Interval_57848 chr15 23104532 23106228 + 0 NA intron (ENSMUSG00000040420.15, intron 1 of 1) protein_coding-intron (ENSMUSG00000040420.15, intron 1 of 9) -49354 ENSMUSG00000094031.1 ENSMUSG00000094031 ENSMUST00000177548 Gm24656 snoRNA Interval_56438 chr14 118766125 118766830 + 0 NA Intergenic Intergenic -8675 ENSMUSG00000088105.1 ENSMUSG00000088105 ENSMUST00000157480 Gm22379 snoRNA Interval_135945 chr6 49028218 49029636 + 0 NA Intergenic Intergenic -7619 ENSMUSG00000029816.10 ENSMUSG00000029816 ENSMUST00000204460 Gpnmb protein_coding Interval_104178 chr3 59832049 59832247 + 0 NA intron (ENSMUSG00000074589.4, intron 1 of 4) transcribed_unprocessed_pseudogene-intron (ENSMUSG00000074589.4, intron 1 of 1) 6399 ENSMUSG00000074589.4 ENSMUSG00000074589 ENSMUST00000192453 4930449A18Rik transcribed_unprocessed_pseudogene Interval_122467 chr5 23175440 23175772 + 0 NA intron (ENSMUSG00000106379.1, intron 2 of 2) protein_coding-intron (ENSMUSG00000106379.1, intron 2 of 2) 48190 ENSMUSG00000104866.1 ENSMUSG00000104866 ENSMUST00000199085 Gm42948 antisense Interval_127847 chr5 108204716 108204978 + 0 NA intron (ENSMUSG00000056531.11, intron 23 of 28) protein_coding-intron (ENSMUSG00000056531.11, intron 23 of 28) 6587 ENSMUSG00000105591.1 ENSMUSG00000105591 ENSMUST00000199594 Gm43083 processed_pseudogene Interval_146146 chr7 44349000 44349390 + 0 NA intron (ENSMUSG00000038738.15, intron 6 of 6) protein_coding-intron (ENSMUSG00000038738.15, intron 20 of 22) 7060 ENSMUSG00000038738.15 ENSMUSG00000038738 ENSMUST00000127164 Shank1 protein_coding Interval_116281 chr4 109245323 109245529 + 0 NA intron (ENSMUSG00000028558.14, intron 1 of 3) protein_coding-intron (ENSMUSG00000028558.14, intron 5 of 7) 844 ENSMUSG00000028558.14 ENSMUSG00000028558 ENSMUST00000141555 Calr4 protein_coding Interval_8425 chr1 139161574 139162070 + 0 NA intron (ENSMUSG00000056268.15, intron 17 of 19) protein_coding-intron (ENSMUSG00000056268.15, intron 18 of 20) 6670 ENSMUSG00000102243.1 ENSMUSG00000102243 ENSMUST00000191655 Gm37718 TEC Interval_100381 chr2 168721967 168722449 + 0 NA intron (ENSMUSG00000027546.15, intron 1 of 4) protein_coding-intron (ENSMUSG00000027546.15, intron 1 of 27) 19756 ENSMUSG00000027546.15 ENSMUSG00000027546 ENSMUST00000156555 Atp9a protein_coding Interval_6551 chr1 116191066 116191382 + 0 NA intron (ENSMUSG00000070695.4, intron 10 of 23) protein_coding-intron (ENSMUSG00000070695.4, intron 10 of 23) 203189 ENSMUSG00000092948.1 ENSMUSG00000092948 ENSMUST00000175207 Gm23393 miRNA Interval_61089 chr15 79169321 79169569 + 0 NA intron (ENSMUSG00000075555.12, intron 1 of 3) processed_transcript-intron (ENSMUSG00000075555.12, intron 1 of 4) -3275 ENSMUSG00000075555.12 ENSMUSG00000075555 ENSMUST00000148028 Gm10863 processed_transcript Interval_130557 chr5 128787997 128788220 + 0 NA intron (ENSMUSG00000029420.14, intron 11 of 20) protein_coding-intron (ENSMUSG00000029420.14, intron 11 of 20) -12558 ENSMUSG00000106522.1 ENSMUSG00000106522 ENSMUST00000199333 Gm42871 sense_intronic Interval_15565 chr10 51571298 51571927 + 0 NA intron (ENSMUSG00000112244.1, intron 1 of 2) processed_pseudogene-intron (ENSMUSG00000112244.1, intron 1 of 2) 2663 ENSMUSG00000112244.1 ENSMUSG00000112244 ENSMUST00000217720 Gm48788 processed_pseudogene Interval_172197 chrX 8948364 8948902 + 0 NA Intergenic Intergenic -6450 ENSMUSG00000081381.1 ENSMUSG00000081381 ENSMUST00000117771 Gm5752 processed_pseudogene Interval_68720 chr16 84977944 84978449 + 0 NA promoter-TSS (ENSMUSG00000022892.11) protein_coding-promoter-TSS (ENSMUSG00000022892.11) 5982 ENSMUSG00000115518.1 ENSMUSG00000115518 ENSMUST00000227835 Gm10791 antisense Interval_80646 chr18 45187527 45187789 + 0 NA Intergenic Intergenic -11165 ENSMUSG00000118143.1 ENSMUSG00000118143 ENSMUST00000237199 Gm50124 processed_pseudogene Interval_152888 chr7 139498642 139499139 + 0 NA TTS (ENSMUSG00000025477.14) protein_coding-TTS (ENSMUSG00000025477.14) -17769 ENSMUSG00000025477.14 ENSMUSG00000025477 ENSMUST00000152475 Inpp5a protein_coding Interval_100422 chr2 168925652 168926717 + 0 NA exon (ENSMUSG00000027551.15, exon 6 of 6) protein_coding-exon (ENSMUSG00000027551.15, exon 6 of 6) 29082 ENSMUSG00000027551.15 ENSMUSG00000027551 ENSMUST00000136242 Zfp64 protein_coding Interval_29893 chr11 87559367 87561660 + 0 NA Intergenic Intergenic -6140 ENSMUSG00000020486.19 ENSMUSG00000020486 ENSMUST00000143950 Septin4 protein_coding Interval_145643 chr7 36669584 36670150 + 0 NA Intergenic Intergenic -25571 ENSMUSG00000104330.1 ENSMUSG00000104330 ENSMUST00000192928 Gm38285 TEC Interval_112387 chr4 40993574 40993773 + 0 NA promoter-TSS (ENSMUSG00000092862.1) miRNA-promoter-TSS (ENSMUSG00000092862.1) -22 ENSMUSG00000092862.1 ENSMUSG00000092862 ENSMUST00000175121 Mir3094 miRNA Interval_86658 chr19 42341094 42341670 + 0 NA intron (ENSMUSG00000042401.8, intron 2 of 14) protein_coding-intron (ENSMUSG00000042401.8, intron 2 of 14) 37719 ENSMUSG00000117706.1 ENSMUSG00000117706 ENSMUST00000237236 Gm50184 processed_pseudogene Interval_64411 chr16 11215134 11215429 + 0 NA intron (ENSMUSG00000097537.2, intron 2 of 2) antisense-intron (ENSMUSG00000097537.2, intron 1 of 1) 11586 ENSMUSG00000097537.2 ENSMUSG00000097537 ENSMUST00000230245 2610020C07Rik antisense Interval_76560 chr17 81079579 81080432 + 0 NA Intergenic Intergenic -14923 ENSMUSG00000024246.9 ENSMUSG00000024246 ENSMUST00000234801 Thumpd2 protein_coding Interval_2340 chr1 38198192 38199878 + 0 NA intron (ENSMUSG00000037138.18, intron 16 of 22) protein_coding-intron (ENSMUSG00000037138.18, intron 16 of 22) -40665 ENSMUSG00000085391.1 ENSMUSG00000085391 ENSMUST00000133299 Gm16150 antisense Interval_145671 chr7 37191408 37191687 + 0 NA Intergenic Intergenic 51006 ENSMUSG00000100905.1 ENSMUSG00000100905 ENSMUST00000189179 Gm28075 lincRNA Interval_22325 chr11 8810638 8812110 + 0 NA Intergenic Intergenic -4526 ENSMUSG00000081539.1 ENSMUSG00000081539 ENSMUST00000121505 Gm11990 processed_pseudogene Interval_80687 chr18 46316996 46318025 + 0 NA Intergenic Intergenic 22919 ENSMUSG00000117742.1 ENSMUSG00000117742 ENSMUST00000236411 4930415P13Rik TEC Interval_123689 chr5 34525692 34526597 + 0 NA intron (ENSMUSG00000054520.15, intron 1 of 12) protein_coding-intron (ENSMUSG00000054520.15, intron 1 of 12) -4505 ENSMUSG00000088332.1 ENSMUSG00000088332 ENSMUST00000157707 Gm22847 snRNA Interval_5029 chr1 84417714 84417955 + 0 NA intron (ENSMUSG00000036766.12, intron 9 of 12) protein_coding-intron (ENSMUSG00000036766.12, intron 9 of 12) -22435 ENSMUSG00000104396.1 ENSMUSG00000104396 ENSMUST00000191700 Gm37959 TEC Interval_102523 chr3 27467598 27467881 + 0 NA intron (ENSMUSG00000039286.12, intron 14 of 26) protein_coding-intron (ENSMUSG00000039286.12, intron 13 of 25) -78902 ENSMUSG00000106625.1 ENSMUSG00000106625 ENSMUST00000198723 Gm43344 TEC Interval_75470 chr17 66884580 66884874 + 0 NA intron (ENSMUSG00000033278.10, intron 14 of 19) protein_coding-intron (ENSMUSG00000033278.10, intron 15 of 32) 22487 ENSMUSG00000117224.1 ENSMUSG00000117224 ENSMUST00000233778 Gm49940 processed_pseudogene Interval_111738 chr4 27071197 27071411 + 0 NA Intergenic Intergenic 55205 ENSMUSG00000083447.1 ENSMUSG00000083447 ENSMUST00000120562 Gm11904 processed_pseudogene Interval_25124 chr11 44331132 44332404 + 0 NA Intergenic Intergenic 55506 ENSMUSG00000082790.1 ENSMUSG00000082790 ENSMUST00000121267 Gm12155 processed_pseudogene Interval_2607 chr1 42057827 42059582 + 0 NA Intergenic Intergenic -44585 ENSMUSG00000100178.1 ENSMUSG00000100178 ENSMUST00000191574 Gm5267 processed_pseudogene Interval_10511 chr1 171410895 171412271 + 0 NA promoter-TSS (ENSMUSG00000026641.13) protein_coding-promoter-TSS (ENSMUSG00000026641.13) -98 ENSMUSG00000026641.13 ENSMUSG00000026641 ENSMUST00000159371 Usf1 protein_coding Interval_50943 chr14 20967054 20968254 + 0 NA intron (ENSMUSG00000021823.10, intron 2 of 7) protein_coding-intron (ENSMUSG00000021823.10, intron 2 of 20) 38256 ENSMUSG00000021823.10 ENSMUSG00000021823 ENSMUST00000224380 Vcl protein_coding Interval_161981 chr8 124255017 124255241 + 0 NA intron (ENSMUSG00000089704.9, intron 1 of 4) protein_coding-intron (ENSMUSG00000089704.9, intron 1 of 15) -40237 ENSMUSG00000089704.9 ENSMUSG00000089704 ENSMUST00000147911 Galnt2 protein_coding Interval_168442 chr9 80501898 80502069 + 0 NA Intergenic Intergenic -36545 ENSMUSG00000032343.15 ENSMUSG00000032343 ENSMUST00000185068 Impg1 protein_coding Interval_138785 chr6 91839232 91840051 + 0 NA Intergenic Intergenic 38344 ENSMUSG00000108310.1 ENSMUSG00000108310 ENSMUST00000206250 Gm44712 TEC Interval_90695 chr2 31973917 31975047 + 0 NA promoter-TSS (ENSMUSG00000001855.15) protein_coding-promoter-TSS (ENSMUSG00000001855.15) -10577 ENSMUSG00000081480.1 ENSMUSG00000081480 ENSMUST00000121807 Gm13608 processed_pseudogene Interval_105323 chr3 84906368 84906765 + 0 NA intron (ENSMUSG00000028086.15, intron 4 of 12) protein_coding-intron (ENSMUSG00000028086.15, intron 3 of 12) 32675 ENSMUSG00000102919.1 ENSMUSG00000102919 ENSMUST00000193246 Gm37726 TEC Interval_135023 chr6 34726693 34727718 + 0 NA promoter-TSS (ENSMUSG00000060411.3) antisense-promoter-TSS (ENSMUSG00000060411.3) -299 ENSMUSG00000060411.3 ENSMUSG00000060411 ENSMUST00000075773 Npn2 antisense Interval_95445 chr2 109420214 109420977 + 0 NA Intergenic Intergenic 38138 ENSMUSG00000084167.1 ENSMUSG00000084167 ENSMUST00000119899 Gm13924 processed_pseudogene Interval_43082 chr13 23717817 23718052 + 0 NA Intergenic Intergenic -10614 ENSMUSG00000083206.1 ENSMUSG00000083206 ENSMUST00000120086 Gm11338 unprocessed_pseudogene Interval_102844 chr3 32066708 32067890 + 0 NA intron (ENSMUSG00000037610.15, intron 2 of 6) protein_coding-intron (ENSMUSG00000037610.15, intron 1 of 4) -88815 ENSMUSG00000037610.15 ENSMUSG00000037610 ENSMUST00000194796 Kcnmb2 protein_coding Interval_109262 chr3 138464718 138465009 + 0 NA intron (ENSMUSG00000005813.12, intron 1 of 2) protein_coding-intron (ENSMUSG00000005813.12, intron 9 of 10) 10322 ENSMUSG00000005813.12 ENSMUSG00000005813 ENSMUST00000198492 Metap1 protein_coding Interval_95853 chr2 117296808 117297312 + 0 NA intron (ENSMUSG00000027347.18, intron 6 of 16) protein_coding-intron (ENSMUSG00000027347.18, intron 6 of 16) 38278 ENSMUSG00000027349.5 ENSMUSG00000027349 ENSMUST00000143612 Fam98b protein_coding Interval_2389 chr1 38897230 38898528 + 0 NA intron (ENSMUSG00000026080.13, intron 1 of 2) protein_coding-intron (ENSMUSG00000026080.13, intron 1 of 6) 131 ENSMUSG00000026080.13 ENSMUSG00000026080 ENSMUST00000195731 Chst10 protein_coding Interval_120270 chr4 145073203 145074623 + 0 NA intron (ENSMUSG00000020220.16, intron 36 of 51) protein_coding-intron (ENSMUSG00000020220.16, intron 52 of 67) 81573 ENSMUSG00000020220.16 ENSMUSG00000020220 ENSMUST00000132700 Vps13d protein_coding Interval_5822 chr1 92196655 92197505 + 0 NA Intergenic Intergenic -1386 ENSMUSG00000026313.16 ENSMUSG00000026313 ENSMUST00000212408 Hdac4 protein_coding Interval_108842 chr3 132505851 132506448 + 0 NA Intergenic Intergenic 31516 ENSMUSG00000089510.1 ENSMUSG00000089510 ENSMUST00000158885 Gm25307 snRNA Interval_129829 chr5 122624700 122626075 + 0 NA Intergenic Intergenic -18018 ENSMUSG00000029469.14 ENSMUSG00000029469 ENSMUST00000136024 Ift81 protein_coding Interval_127307 chr5 102418862 102419565 + 0 NA Intergenic Intergenic 3010 ENSMUSG00000106295.1 ENSMUSG00000106295 ENSMUST00000197280 Gm42932 processed_pseudogene Interval_86032 chr19 35124786 35125449 + 0 NA intron (ENSMUSG00000117973.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000117973.1, intron 1 of 2) -4411 ENSMUSG00000117973.1 ENSMUSG00000117973 ENSMUST00000238087 Gm50140 lincRNA Interval_23928 chr11 28430934 28431176 + 0 NA intron (ENSMUSG00000032878.16, intron 1 of 4) protein_coding-intron (ENSMUSG00000032878.16, intron 3 of 3) 3055 ENSMUSG00000032878.16 ENSMUSG00000032878 ENSMUST00000109501 Ccdc85a protein_coding Interval_100812 chr2 172660798 172663280 + 0 NA Intergenic Intergenic 111048 ENSMUSG00000028640.11 ENSMUSG00000028640 ENSMUST00000142633 Tfap2c protein_coding Interval_27780 chr11 69960691 69961028 + 0 NA Intergenic Intergenic -6059 ENSMUSG00000018569.12 ENSMUSG00000018569 ENSMUST00000151515 Cldn7 protein_coding Interval_16676 chr10 66982923 66983743 + 0 NA Intergenic Intergenic -21742 ENSMUSG00000112925.1 ENSMUSG00000112925 ENSMUST00000218205 Gm31763 antisense Interval_146279 chr7 45101677 45101904 + 0 NA TTS (ENSMUSG00000003420.8) protein_coding-TTS (ENSMUSG00000003420.8) 1965 ENSMUSG00000003420.8 ENSMUSG00000003420 ENSMUST00000211535 Fcgrt protein_coding Interval_154838 chr8 24180563 24181145 + 0 NA intron (ENSMUSG00000053979.4, intron 1 of 1) lincRNA-intron (ENSMUSG00000053979.4, intron 1 of 1) 6950 ENSMUSG00000053979.4 ENSMUSG00000053979 ENSMUST00000066740 A730045E13Rik lincRNA Interval_20254 chr10 116461085 116461291 + 0 NA intron (ENSMUSG00000054934.10, intron 1 of 2) protein_coding-intron (ENSMUSG00000054934.10, intron 1 of 2) -11975 ENSMUSG00000085837.8 ENSMUSG00000085837 ENSMUST00000123348 Kcnmb4os2 antisense Interval_27181 chr11 63888300 63890016 + 0 NA exon (ENSMUSG00000070407.5, exon 2 of 2) protein_coding-exon (ENSMUSG00000070407.5, exon 2 of 2) 33132 ENSMUSG00000070407.5 ENSMUSG00000070407 ENSMUST00000094103 Hs3st3b1 protein_coding Interval_53852 chr14 62759839 62762076 + 0 NA exon (ENSMUSG00000035161.7, exon 1 of 19) protein_coding-exon (ENSMUSG00000035161.7, exon 1 of 19) -18740 ENSMUSG00000115371.1 ENSMUSG00000115371 ENSMUST00000226895 Gm18146 processed_pseudogene Interval_22620 chr11 12335940 12336620 + 0 NA TTS (ENSMUSG00000086584.8) antisense-TTS (ENSMUSG00000086584.8) 14005 ENSMUSG00000086584.8 ENSMUSG00000086584 ENSMUST00000174550 Gm12002 antisense Interval_122292 chr5 20980657 20981141 + 0 NA Intergenic Intergenic 29910 ENSMUSG00000101013.1 ENSMUSG00000101013 ENSMUST00000190567 A630072M18Rik antisense Interval_58757 chr15 37802985 37804414 + 0 NA Intergenic Intergenic -38298 ENSMUSG00000086313.1 ENSMUSG00000086313 ENSMUST00000156011 Gm15940 sense_intronic Interval_36815 chr12 54312390 54313868 + 0 NA Intergenic Intergenic 3886 ENSMUSG00000112705.1 ENSMUSG00000112705 ENSMUST00000217997 Gm47552 lincRNA Interval_95125 chr2 104082630 104082942 + 0 NA intron (ENSMUSG00000068686.12, intron 3 of 3) protein_coding-intron (ENSMUSG00000068686.12, intron 3 of 3) 12895 ENSMUSG00000068686.12 ENSMUSG00000068686 ENSMUST00000111130 Cd59b protein_coding Interval_32778 chr11 110490246 110490461 + 0 NA intron (ENSMUSG00000020623.11, intron 3 of 9) protein_coding-intron (ENSMUSG00000020623.11, intron 3 of 11) 12976 ENSMUSG00000020623.11 ENSMUSG00000020623 ENSMUST00000133920 Map2k6 protein_coding Interval_93342 chr2 72096296 72096764 + 0 NA intron (ENSMUSG00000049044.16, intron 1 of 2) protein_coding-intron (ENSMUSG00000049044.16, intron 1 of 27) 52266 ENSMUSG00000085439.1 ENSMUSG00000085439 ENSMUST00000126462 Rapgef4os1 antisense Interval_61783 chr15 84115252 84116758 + 0 NA intron (ENSMUSG00000018868.4, intron 6 of 8) protein_coding-intron (ENSMUSG00000018868.4, intron 6 of 9) 7170 ENSMUSG00000018868.4 ENSMUSG00000018868 ENSMUST00000019012 Pnpla5 protein_coding Interval_161169 chr8 118027947 118028858 + 0 NA Intergenic Intergenic -92552 ENSMUSG00000065028.1 ENSMUSG00000065028 ENSMUST00000083094 Gm25200 snoRNA Interval_93043 chr2 69766051 69766719 + 0 NA exon (ENSMUSG00000083007.1, exon 1 of 1) processed_pseudogene-exon (ENSMUSG00000083007.1, exon 1 of 1) 203 ENSMUSG00000083007.1 ENSMUSG00000083007 ENSMUST00000118359 Gm13623 processed_pseudogene Interval_138615 chr6 90451511 90453173 + 0 NA Intergenic Intergenic 9126 ENSMUSG00000107605.1 ENSMUSG00000107605 ENSMUST00000204442 Gm44117 lincRNA Interval_57447 chr15 11012745 11013171 + 0 NA intron (ENSMUSG00000022243.10, intron 3 of 6) protein_coding-intron (ENSMUSG00000022243.10, intron 3 of 6) 12237 ENSMUSG00000022243.10 ENSMUSG00000022243 ENSMUST00000117100 Slc45a2 protein_coding Interval_120046 chr4 141515779 141517154 + 0 NA intron (ENSMUSG00000040761.16, intron 1 of 1) protein_coding-intron (ENSMUSG00000040761.16, intron 3 of 14) -28154 ENSMUSG00000040761.16 ENSMUSG00000040761 ENSMUST00000152081 Spen protein_coding Interval_66457 chr16 33988181 33989016 + 0 NA intron (ENSMUSG00000061751.16, intron 22 of 26) protein_coding-intron (ENSMUSG00000061751.16, intron 55 of 59) 18859 ENSMUSG00000116835.1 ENSMUSG00000116835 ENSMUST00000231993 Gm49594 processed_pseudogene Interval_7534 chr1 132052498 132052694 + 0 NA intron (ENSMUSG00000059149.17, intron 1 of 2) protein_coding-intron (ENSMUSG00000059149.17, intron 3 of 6) -10680 ENSMUSG00000059149.17 ENSMUSG00000059149 ENSMUST00000162628 Mfsd4a protein_coding Interval_74549 chr17 53263669 53263922 + 0 NA Intergenic Intergenic 17832 ENSMUSG00000117194.1 ENSMUSG00000117194 ENSMUST00000233695 Gm49913 processed_pseudogene Interval_147423 chr7 66839296 66840757 + 0 NA intron (ENSMUSG00000058145.16, intron 1 of 8) protein_coding-intron (ENSMUSG00000058145.16, intron 1 of 22) 291 ENSMUSG00000058145.16 ENSMUSG00000058145 ENSMUST00000154103 Adamts17 protein_coding Interval_46973 chr13 73846724 73847948 + 0 NA exon (ENSMUSG00000021567.15, exon 1 of 2) protein_coding-exon (ENSMUSG00000021567.15, exon 1 of 2) 276 ENSMUSG00000021567.15 ENSMUSG00000021567 ENSMUST00000221679 Nkd2 protein_coding Interval_49336 chr13 111272536 111272916 + 0 NA Intergenic Intergenic 17713 ENSMUSG00000055194.3 ENSMUSG00000055194 ENSMUST00000054716 Actbl2 protein_coding Interval_72958 chr17 33807203 33807800 + 0 NA Intergenic Intergenic -14519 ENSMUSG00000042099.16 ENSMUSG00000042099 ENSMUST00000174608 Kank3 protein_coding Interval_45892 chr13 58868788 58868988 + 0 NA intron (ENSMUSG00000055254.15, intron 8 of 11) protein_coding-intron (ENSMUSG00000055254.15, intron 9 of 17) 33073 ENSMUSG00000055254.15 ENSMUSG00000055254 ENSMUST00000223636 Ntrk2 protein_coding Interval_59106 chr15 44000278 44000637 + 0 NA Intergenic Intergenic -130421 ENSMUSG00000054409.5 ENSMUSG00000054409 ENSMUST00000067469 Tmem74 protein_coding Interval_128613 chr5 114308796 114309659 + 0 NA intron (ENSMUSG00000066952.11, intron 1 of 31) protein_coding-intron (ENSMUSG00000066952.11, intron 1 of 31) -5714 ENSMUSG00000066952.11 ENSMUSG00000066952 ENSMUST00000125230 Myo1h protein_coding Interval_31196 chr11 98828979 98830946 + 0 NA intron (ENSMUSG00000078676.9, intron 11 of 13) protein_coding-intron (ENSMUSG00000078676.9, intron 12 of 14) -19875 ENSMUSG00000075576.12 ENSMUSG00000075576 ENSMUST00000141696 Gm12359 antisense Interval_172990 chrX 60182665 60183180 + 0 NA Intergenic Intergenic -35222 ENSMUSG00000031139.16 ENSMUSG00000031139 ENSMUST00000033478 Mcf2 protein_coding Interval_147432 chr7 67081372 67081588 + 0 NA intron (ENSMUSG00000058145.16, intron 18 of 21) protein_coding-intron (ENSMUSG00000058145.16, intron 19 of 22) -1363 ENSMUSG00000108833.1 ENSMUSG00000108833 ENSMUST00000207587 Gm17909 processed_pseudogene Interval_74089 chr17 46532043 46532476 + 0 NA intron (ENSMUSG00000040327.16, intron 7 of 38) protein_coding-intron (ENSMUSG00000040327.16, intron 8 of 41) 19534 ENSMUSG00000015605.6 ENSMUSG00000015605 ENSMUST00000233797 Srf protein_coding Interval_139319 chr6 98694142 98695064 + 0 NA exon (ENSMUSG00000107614.1, exon 2 of 2) lincRNA-exon (ENSMUSG00000107614.1, exon 2 of 2) 3071 ENSMUSG00000107614.1 ENSMUSG00000107614 ENSMUST00000204359 Gm44196 lincRNA Interval_1034 chr1 14249693 14250123 + 0 NA intron (ENSMUSG00000025932.14, intron 8 of 16) protein_coding-intron (ENSMUSG00000025932.14, intron 9 of 17) 6082 ENSMUSG00000102588.1 ENSMUSG00000102588 ENSMUST00000193605 Gm37444 TEC Interval_111357 chr4 19651370 19651557 + 0 NA TTS (ENSMUSG00000078772.2) protein_coding-TTS (ENSMUSG00000078772.2) 46012 ENSMUSG00000078772.2 ENSMUSG00000078772 ENSMUST00000108250 Gm12353 protein_coding Interval_81560 chr18 61692100 61692639 + 0 NA promoter-TSS (ENSMUSG00000102778.1) antisense-promoter-TSS (ENSMUSG00000102778.1) 15 ENSMUSG00000102778.1 ENSMUSG00000102778 ENSMUST00000191654 Gm38165 antisense Interval_105310 chr3 84801038 84801518 + 0 NA intron (ENSMUSG00000102805.5, intron 3 of 9) protein_coding-intron (ENSMUSG00000102805.5, intron 3 of 9) -14488 ENSMUSG00000028086.15 ENSMUSG00000028086 ENSMUST00000029727 Fbxw7 protein_coding Interval_2242 chr1 37307894 37308230 + 0 NA intron (ENSMUSG00000026113.17, intron 1 of 25) protein_coding-intron (ENSMUSG00000026113.17, intron 1 of 25) -8365 ENSMUSG00000102231.1 ENSMUSG00000102231 ENSMUST00000192404 1700074A21Rik TEC Interval_149257 chr7 96752210 96753329 + 0 NA intron (ENSMUSG00000048078.16, intron 11 of 32) protein_coding-intron (ENSMUSG00000048078.16, intron 13 of 32) -43872 ENSMUSG00000048078.16 ENSMUSG00000048078 ENSMUST00000147659 Tenm4 protein_coding Interval_161466 chr8 120581775 120581960 + 0 NA TTS (ENSMUSG00000031822.20) protein_coding-TTS (ENSMUSG00000031822.20) 4341 ENSMUSG00000031821.11 ENSMUSG00000031821 ENSMUST00000126094 Gins2 protein_coding Interval_16745 chr10 67893191 67893546 + 0 NA intron (ENSMUSG00000037855.15, intron 2 of 3) protein_coding-intron (ENSMUSG00000037855.15, intron 3 of 4) 19067 ENSMUSG00000037855.15 ENSMUSG00000037855 ENSMUST00000138543 Zfp365 protein_coding Interval_31101 chr11 98141761 98142068 + 0 NA intron (ENSMUSG00000020883.18, intron 1 of 7) protein_coding-intron (ENSMUSG00000020883.18, intron 1 of 14) 8489 ENSMUSG00000020883.18 ENSMUSG00000020883 ENSMUST00000148473 Fbxl20 protein_coding Interval_51444 chr14 27606817 27607058 + 0 NA Intergenic Intergenic -54779 ENSMUSG00000114482.1 ENSMUSG00000114482 ENSMUST00000225617 Gm7604 processed_pseudogene Interval_92001 chr2 52424002 52425568 + 0 NA promoter-TSS (ENSMUSG00000085315.7) processed_transcript-promoter-TSS (ENSMUSG00000085315.7) -227 ENSMUSG00000085315.7 ENSMUSG00000085315 ENSMUST00000143821 A430018G15Rik processed_transcript Interval_86394 chr19 40218015 40218459 + 0 NA Intergenic Intergenic 5855 ENSMUSG00000098091.1 ENSMUSG00000098091 ENSMUST00000182456 Gm16470 processed_pseudogene Interval_47895 chr13 94232446 94232881 + 0 NA intron (ENSMUSG00000021687.14, intron 2 of 7) protein_coding-intron (ENSMUSG00000021687.14, intron 3 of 8) 13895 ENSMUSG00000021687.14 ENSMUSG00000021687 ENSMUST00000138255 Scamp1 protein_coding Interval_8292 chr1 136972473 136973792 + 0 NA Intergenic Intergenic 17138 ENSMUSG00000088970.1 ENSMUSG00000088970 ENSMUST00000158345 Gm23763 snRNA Interval_84433 chr19 10879936 10882525 + 0 NA promoter-TSS (ENSMUSG00000034659.14) protein_coding-promoter-TSS (ENSMUSG00000034659.14) 468 ENSMUSG00000034659.14 ENSMUSG00000034659 ENSMUST00000151355 Tmem109 protein_coding Interval_142117 chr6 137297948 137298224 + 0 NA intron (ENSMUSG00000030223.14, intron 1 of 2) protein_coding-intron (ENSMUSG00000030223.14, intron 1 of 26) -112673 ENSMUSG00000030223.14 ENSMUSG00000030223 ENSMUST00000203127 Ptpro protein_coding Interval_124549 chr5 50310022 50310548 + 0 NA intron (ENSMUSG00000105020.1, intron 4 of 4) unprocessed_pseudogene-intron (ENSMUSG00000105020.1, intron 4 of 4) -19799 ENSMUSG00000095857.1 ENSMUSG00000095857 ENSMUST00000179376 Gm22618 snRNA Interval_10773 chr1 174553035 174553915 + 0 NA intron (ENSMUSG00000028354.13, intron 1 of 2) protein_coding-intron (ENSMUSG00000028354.13, intron 2 of 17) -56334 ENSMUSG00000028354.13 ENSMUSG00000028354 ENSMUST00000193905 Fmn2 protein_coding Interval_141513 chr6 128812376 128812658 + 0 NA intron (ENSMUSG00000107872.2, intron 3 of 5) protein_coding-intron (ENSMUSG00000107872.2, intron 3 of 5) 13702 ENSMUSG00000107872.2 ENSMUSG00000107872 ENSMUST00000204677 Gm44511 protein_coding Interval_84257 chr19 9056774 9057794 + 0 NA intron (ENSMUSG00000069833.13, intron 5 of 5) protein_coding-intron (ENSMUSG00000069833.13, intron 5 of 5) 30674 ENSMUSG00000024653.2 ENSMUSG00000024653 ENSMUST00000025554 Scgb1a1 protein_coding Interval_129180 chr5 118027359 118029674 + 0 NA intron (ENSMUSG00000029359.13, intron 1 of 6) protein_coding-intron (ENSMUSG00000029359.13, intron 1 of 7) -1146 ENSMUSG00000107058.1 ENSMUSG00000107058 ENSMUST00000202755 Gm42545 TEC Interval_16390 chr10 62687620 62687917 + 0 NA intron (ENSMUSG00000036923.12, intron 1 of 3) protein_coding-intron (ENSMUSG00000036923.12, intron 2 of 3) 5260 ENSMUSG00000105329.1 ENSMUSG00000105329 ENSMUST00000200383 Mir7215 miRNA Interval_48080 chr13 95851524 95851846 + 0 NA intron (ENSMUSG00000021676.10, intron 1 of 6) protein_coding-intron (ENSMUSG00000021676.10, intron 1 of 35) 45435 ENSMUSG00000065866.1 ENSMUSG00000065866 ENSMUST00000083932 Gm24032 snRNA Interval_83965 chr19 5835958 5836190 + 0 NA exon (ENSMUSG00000092274.3, exon 1 of 1) lincRNA-exon (ENSMUSG00000092274.3, exon 1 of 1) -8062 ENSMUSG00000092274.3 ENSMUSG00000092274 ENSMUST00000174829 Neat1 lincRNA Interval_5161 chr1 86136114 86137199 + 0 NA intron (ENSMUSG00000094638.1, intron 1 of 5) protein_coding-intron (ENSMUSG00000026229.17, intron 23 of 24) 3019 ENSMUSG00000094638.1 ENSMUSG00000094638 ENSMUST00000135197 Gm21972 protein_coding Interval_148973 chr7 90538937 90542391 + 0 NA intron (ENSMUSG00000052572.19, intron 3 of 27) protein_coding-intron (ENSMUSG00000052572.19, intron 3 of 27) -64669 ENSMUSG00000030614.8 ENSMUSG00000030614 ENSMUST00000123622 Tmem126b protein_coding Interval_112213 chr4 35985572 35986149 + 0 NA intron (ENSMUSG00000045083.14, intron 1 of 2) protein_coding-intron (ENSMUSG00000045083.14, intron 2 of 2) 18319 ENSMUSG00000082169.1 ENSMUSG00000082169 ENSMUST00000121343 Gm12369 processed_pseudogene Interval_139341 chr6 99100332 99100545 + 0 NA intron (ENSMUSG00000030067.17, intron 1 of 15) protein_coding-intron (ENSMUSG00000030067.17, intron 1 of 15) -24381 ENSMUSG00000105902.1 ENSMUSG00000105902 ENSMUST00000200105 Gm49348 miRNA Interval_138688 chr6 91179237 91181262 + 0 NA Intergenic Intergenic -6231 ENSMUSG00000108158.1 ENSMUSG00000108158 ENSMUST00000205134 Gm44002 TEC Interval_148964 chr7 90456977 90457813 + 0 NA promoter-TSS (ENSMUSG00000030615.12) protein_coding-promoter-TSS (ENSMUSG00000030615.12) 143 ENSMUSG00000109216.1 ENSMUSG00000109216 ENSMUST00000207423 Gm44907 TEC Interval_146812 chr7 52116197 52116445 + 0 NA Intergenic Intergenic -40742 ENSMUSG00000088722.1 ENSMUSG00000088722 ENSMUST00000158097 Gm22211 snRNA Interval_41209 chr12 111794322 111795988 + 0 NA promoter-TSS (ENSMUSG00000021288.19) protein_coding-promoter-TSS (ENSMUSG00000021288.19) 14827 ENSMUSG00000021287.12 ENSMUSG00000021287 ENSMUST00000133679 Xrcc3 protein_coding Interval_29098 chr11 80312333 80312995 + 0 NA intron (ENSMUSG00000017692.8, intron 2 of 8) protein_coding-intron (ENSMUSG00000017692.8, intron 2 of 8) -33739 ENSMUSG00000017692.8 ENSMUSG00000017692 ENSMUST00000157016 Rhbdl3 protein_coding Interval_136716 chr6 58486456 58486893 + 0 NA intron (ENSMUSG00000107960.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000107960.1, intron 1 of 1) 8573 ENSMUSG00000093518.1 ENSMUSG00000093518 ENSMUST00000176017 Vmn1r-ps22 unprocessed_pseudogene Interval_75626 chr17 69481124 69481529 + 0 NA intron (ENSMUSG00000091636.2, intron 1 of 1) protein_coding-intron (ENSMUSG00000091636.2, intron 1 of 1) -5451 ENSMUSG00000117053.1 ENSMUSG00000117053 ENSMUST00000232967 A730049N16Rik antisense Interval_63397 chr15 100806631 100806867 + 0 NA TTS (ENSMUSG00000023032.12) protein_coding-TTS (ENSMUSG00000023032.12) 4001 ENSMUSG00000023032.12 ENSMUSG00000023032 ENSMUST00000162744 Slc4a8 protein_coding Interval_130468 chr5 127938048 127938332 + 0 NA intron (ENSMUSG00000034310.8, intron 4 of 8) protein_coding-intron (ENSMUSG00000034310.8, intron 4 of 8) 59659 ENSMUSG00000085328.2 ENSMUSG00000085328 ENSMUST00000164420 Gm17131 unprocessed_pseudogene Interval_66353 chr16 33336803 33337975 + 0 NA Intergenic Intergenic 43286 ENSMUSG00000097318.2 ENSMUSG00000097318 ENSMUST00000180923 1700007L15Rik bidirectional_promoter_lncRNA Interval_29633 chr11 85673990 85674268 + 0 NA intron (ENSMUSG00000059439.15, intron 1 of 4) protein_coding-intron (ENSMUSG00000059439.15, intron 23 of 24) 45615 ENSMUSG00000086199.7 ENSMUSG00000086199 ENSMUST00000146806 Bcas3os1 antisense Interval_140761 chr6 121109317 121110739 + 0 NA promoter-TSS (ENSMUSG00000051586.17) protein_coding-promoter-TSS (ENSMUSG00000051586.17) -6770 ENSMUSG00000108096.1 ENSMUSG00000108096 ENSMUST00000203344 Minpp1-ps processed_pseudogene Interval_38653 chr12 80838436 80839332 + 0 NA intron (ENSMUSG00000021133.9, intron 2 of 5) protein_coding-intron (ENSMUSG00000021133.9, intron 2 of 5) 48374 ENSMUSG00000021133.9 ENSMUSG00000021133 ENSMUST00000219720 Susd6 protein_coding Interval_3143 chr1 53977415 53978053 + 0 NA intron (ENSMUSG00000042807.15, intron 2 of 3) protein_coding-intron (ENSMUSG00000042807.15, intron 2 of 28) -90793 ENSMUSG00000087949.1 ENSMUSG00000087949 ENSMUST00000157324 Gm24251 snRNA Interval_168678 chr9 85764342 85764784 + 0 NA Intergenic Intergenic 7917 ENSMUSG00000065706.1 ENSMUSG00000065706 ENSMUST00000083772 Gm22830 snoRNA Interval_132498 chr5 145481159 145481626 + 0 NA Intergenic Intergenic -11669 ENSMUSG00000038656.5 ENSMUSG00000038656 ENSMUST00000031633 Cyp3a16 protein_coding Interval_136875 chr6 62221579 62222548 + 0 NA intron (ENSMUSG00000039578.17, intron 2 of 2) protein_coding-intron (ENSMUSG00000039578.17, intron 9 of 9) 71947 ENSMUSG00000107590.1 ENSMUSG00000107590 ENSMUST00000204019 Gm43897 processed_pseudogene Interval_82036 chr18 67298848 67300100 + 0 NA intron (ENSMUSG00000024525.7, intron 1 of 7) protein_coding-intron (ENSMUSG00000024525.7, intron 1 of 7) -9115 ENSMUSG00000024525.7 ENSMUSG00000024525 ENSMUST00000237149 Impa2 protein_coding Interval_78624 chr18 15551972 15552969 + 0 NA intron (ENSMUSG00000047161.12, intron 3 of 5) protein_coding-intron (ENSMUSG00000047161.12, intron 2 of 3) 149383 ENSMUSG00000117541.1 ENSMUSG00000117541 ENSMUST00000234487 Gm50048 antisense Interval_147334 chr7 65902572 65903463 + 0 NA intron (ENSMUSG00000030513.14, intron 1 of 19) protein_coding-intron (ENSMUSG00000030513.14, intron 1 of 21) -41025 ENSMUSG00000093405.1 ENSMUSG00000093405 ENSMUST00000176744 Gm20684 bidirectional_promoter_lncRNA Interval_153654 chr8 4299590 4300998 + 0 NA intron (ENSMUSG00000040028.10, intron 4 of 5) protein_coding-intron (ENSMUSG00000040028.10, intron 4 of 5) 12325 ENSMUSG00000040028.10 ENSMUSG00000040028 ENSMUST00000208987 Elavl1 protein_coding Interval_44197 chr13 41846915 41848402 + 0 NA promoter-TSS (ENSMUSG00000058022.14) protein_coding-promoter-TSS (ENSMUSG00000058022.14) -3060 ENSMUSG00000103479.1 ENSMUSG00000103479 ENSMUST00000192605 Gm37698 TEC Interval_136536 chr6 55273044 55273263 + 0 NA intron (ENSMUSG00000038022.11, intron 9 of 10) protein_coding-intron (ENSMUSG00000038022.11, intron 9 of 17) 34733 ENSMUSG00000107766.1 ENSMUSG00000107766 ENSMUST00000204173 Gm44073 antisense Interval_7224 chr1 128000071 128002021 + 0 NA intron (ENSMUSG00000036086.16, intron 2 of 2) protein_coding-intron (ENSMUSG00000036086.16, intron 8 of 20) -16359 ENSMUSG00000104164.1 ENSMUSG00000104164 ENSMUST00000193744 Gm38248 TEC Interval_85334 chr19 24889252 24890415 + 0 NA Intergenic Intergenic 11364 ENSMUSG00000051490.3 ENSMUSG00000051490 ENSMUST00000058600 Foxd4 protein_coding Interval_86271 chr19 38297682 38298653 + 0 NA TTS (ENSMUSG00000067242.11) protein_coding-TTS (ENSMUSG00000067242.11) 10216 ENSMUSG00000118242.1 ENSMUSG00000118242 ENSMUST00000237799 Gm50141 processed_pseudogene Interval_140243 chr6 115759470 115760219 + 0 NA promoter-TSS (ENSMUSG00000059900.14) protein_coding-promoter-TSS (ENSMUSG00000059900.14) 2566 ENSMUSG00000059900.14 ENSMUSG00000059900 ENSMUST00000166254 Tmem40 protein_coding Interval_133024 chr5 149359863 149360057 + 0 NA Intergenic Intergenic -8516 ENSMUSG00000107314.1 ENSMUSG00000107314 ENSMUST00000201641 Gm20488 processed_transcript Interval_84327 chr19 10143195 10145841 + 0 NA Intergenic Intergenic 31643 ENSMUSG00000117700.1 ENSMUSG00000117700 ENSMUST00000235345 Gm50359 processed_pseudogene Interval_142301 chr6 140532809 140533002 + 0 NA intron (ENSMUSG00000030231.11, intron 5 of 10) protein_coding-intron (ENSMUSG00000030231.11, intron 7 of 30) 1942 ENSMUSG00000084477.1 ENSMUSG00000084477 ENSMUST00000122528 Gm25780 misc_RNA Interval_12302 chr1 191534308 191534478 + 0 NA Intergenic Intergenic 2499 ENSMUSG00000102246.1 ENSMUSG00000102246 ENSMUST00000192556 9430037O13Rik TEC Interval_136915 chr6 64405179 64405508 + 0 NA intron (ENSMUSG00000071424.10, intron 12 of 15) protein_coding-intron (ENSMUSG00000071424.10, intron 12 of 15) -8305 ENSMUSG00000064775.1 ENSMUSG00000064775 ENSMUST00000082841 Gm25205 snRNA Interval_152146 chr7 130110371 130111023 + 0 NA Intergenic Intergenic 75603 ENSMUSG00000065763.1 ENSMUSG00000065763 ENSMUST00000083829 Gm23847 snRNA Interval_56412 chr14 118604533 118605115 + 0 NA intron (ENSMUSG00000032849.14, intron 12 of 29) protein_coding-intron (ENSMUSG00000032849.14, intron 13 of 30) -12352 ENSMUSG00000098433.1 ENSMUSG00000098433 ENSMUST00000184391 Mir6391 miRNA Interval_114822 chr4 85855423 85855623 + 0 NA intron (ENSMUSG00000066113.16, intron 2 of 3) protein_coding-intron (ENSMUSG00000066113.16, intron 2 of 3) -54388 ENSMUSG00000088122.2 ENSMUSG00000088122 ENSMUST00000157497 Gm26069 misc_RNA Interval_173233 chrX 74640638 74641087 + 0 NA exon (ENSMUSG00000079534.1, exon 4 of 4) protein_coding-exon (ENSMUSG00000079534.1, exon 4 of 4) 4773 ENSMUSG00000079534.1 ENSMUSG00000079534 ENSMUST00000114119 Gm5640 protein_coding Interval_15065 chr10 42298158 42298687 + 0 NA Intergenic Intergenic -11353 ENSMUSG00000088165.1 ENSMUSG00000088165 ENSMUST00000157540 Gm23533 misc_RNA Interval_169381 chr9 96813726 96814752 + 0 NA promoter-TSS (ENSMUSG00000100922.1) processed_pseudogene-promoter-TSS (ENSMUSG00000100922.1) 95 ENSMUSG00000100922.1 ENSMUSG00000100922 ENSMUST00000186517 Gm8520 processed_pseudogene Interval_174184 chrX 138578623 138579093 + 0 NA intron (ENSMUSG00000059203.10, intron 6 of 10) protein_coding-intron (ENSMUSG00000059203.10, intron 5 of 9) -55110 ENSMUSG00000081017.1 ENSMUSG00000081017 ENSMUST00000118275 Gm15000 processed_pseudogene Interval_162406 chr8 128099026 128099530 + 0 NA Intergenic Intergenic 178947 ENSMUSG00000099326.1 ENSMUSG00000099326 ENSMUST00000184910 Mir21c miRNA Interval_143946 chr7 18388855 18389707 + 0 NA Intergenic Intergenic 11584 ENSMUSG00000109209.1 ENSMUSG00000109209 ENSMUST00000208748 Gm45104 TEC Interval_167804 chr9 72797169 72797827 + 0 NA Intergenic Intergenic -21273 ENSMUSG00000098294.1 ENSMUSG00000098294 ENSMUST00000184673 Gm27204 lincRNA Interval_89629 chr2 23564534 23565177 + 0 NA intron (ENSMUSG00000026771.14, intron 1 of 11) protein_coding-intron (ENSMUSG00000026771.14, intron 1 of 10) -49632 ENSMUSG00000026771.14 ENSMUSG00000026771 ENSMUST00000123843 Spopl protein_coding Interval_23765 chr11 26029383 26029596 + 0 NA intron (ENSMUSG00000032985.15, intron 1 of 5) protein_coding-intron (ENSMUSG00000032985.15, intron 1 of 6) -172751 ENSMUSG00000099015.1 ENSMUSG00000099015 ENSMUST00000185114 Mir6372 miRNA Interval_47302 chr13 80896613 80898698 + 0 NA Intergenic Intergenic 7137 ENSMUSG00000074794.10 ENSMUSG00000074794 ENSMUST00000162904 Arrdc3 protein_coding Interval_51932 chr14 34063475 34063900 + 0 NA intron (ENSMUSG00000047441.4, intron 9 of 16) protein_coding-intron (ENSMUSG00000047441.4, intron 9 of 16) 10510 ENSMUSG00000047441.4 ENSMUSG00000047441 ENSMUST00000058725 Antxrl protein_coding Interval_163006 chr9 14463437 14464941 + 0 NA exon (ENSMUSG00000053914.9, exon 2 of 2) protein_coding-exon (ENSMUSG00000053914.9, exon 2 of 2) -12167 ENSMUSG00000098832.2 ENSMUSG00000098832 ENSMUST00000184843 Kdm4dl unprocessed_pseudogene Interval_11236 chr1 180375106 180375789 + 0 NA promoter-TSS (ENSMUSG00000103772.1) TEC-promoter-TSS (ENSMUSG00000103772.1) -997 ENSMUSG00000103772.1 ENSMUSG00000103772 ENSMUST00000194945 Gm36933 TEC Interval_33700 chr11 117974748 117976817 + 0 NA Intergenic Intergenic -6331 ENSMUSG00000053113.3 ENSMUSG00000053113 ENSMUST00000132295 Socs3 protein_coding Interval_87485 chr19 52956042 52957735 + 0 NA intron (ENSMUSG00000025027.18, intron 19 of 21) protein_coding-intron (ENSMUSG00000025027.18, intron 19 of 21) 33646 ENSMUSG00000117896.1 ENSMUSG00000117896 ENSMUST00000237126 AA387883 lincRNA Interval_72573 chr17 30736997 30738296 + 0 NA intron (ENSMUSG00000033826.10, intron 42 of 90) protein_coding-intron (ENSMUSG00000033826.10, intron 44 of 92) 44483 ENSMUSG00000094785.1 ENSMUSG00000094785 ENSMUST00000083205 Gm24661 snRNA Interval_34532 chr12 4923210 4923643 + 0 NA intron (ENSMUSG00000052812.5, intron 1 of 6) protein_coding-intron (ENSMUSG00000052812.5, intron 1 of 30) -16162 ENSMUSG00000020634.12 ENSMUSG00000020634 ENSMUST00000141360 Ubxn2a protein_coding Interval_163001 chr9 14380187 14381981 + 0 NA promoter-TSS (ENSMUSG00000037419.9) protein_coding-promoter-TSS (ENSMUSG00000037419.9) -101 ENSMUSG00000037419.9 ENSMUSG00000037419 ENSMUST00000214236 Endod1 protein_coding Interval_85545 chr19 28368027 28368725 + 0 NA intron (ENSMUSG00000052942.13, intron 4 of 10) protein_coding-intron (ENSMUSG00000052942.13, intron 3 of 9) -67951 ENSMUSG00000052942.13 ENSMUSG00000052942 ENSMUST00000161328 Glis3 protein_coding Interval_87387 chr19 48243687 48244197 + 0 NA intron (ENSMUSG00000063434.6, intron 1 of 26) protein_coding-intron (ENSMUSG00000063434.6, intron 1 of 26) -3297 ENSMUSG00000089004.1 ENSMUSG00000089004 ENSMUST00000158379 Gm23857 rRNA Interval_112107 chr4 34734104 34736354 + 0 NA Intergenic Intergenic -5034 ENSMUSG00000028294.15 ENSMUSG00000028294 ENSMUST00000160209 Cfap206 protein_coding Interval_124814 chr5 55082933 55083156 + 0 NA Intergenic Intergenic 86424 ENSMUSG00000106113.1 ENSMUSG00000106113 ENSMUST00000196691 Gm43779 processed_pseudogene Interval_70998 chr17 17063616 17064575 + 0 NA promoter-TSS (ENSMUSG00000096696.1) protein_coding-promoter-TSS (ENSMUSG00000096696.1) -18 ENSMUSG00000096696.1 ENSMUSG00000096696 ENSMUST00000127027 Zfp960 protein_coding Interval_93846 chr2 77411385 77412567 + 0 NA exon (ENSMUSG00000027016.17, exon 8 of 8) protein_coding-exon (ENSMUSG00000027016.17, exon 8 of 8) -50693 ENSMUSG00000085845.7 ENSMUSG00000085845 ENSMUST00000126572 Gm13944 antisense Interval_67238 chr16 44671523 44672883 + 0 NA Intergenic Intergenic -52154 ENSMUSG00000036208.13 ENSMUSG00000036208 ENSMUST00000132610 Nepro protein_coding Interval_106129 chr3 93461345 93462541 + 0 NA intron (ENSMUSG00000102476.1, intron 1 of 3) lincRNA-intron (ENSMUSG00000102476.1, intron 1 of 3) 3416 ENSMUSG00000102476.1 ENSMUSG00000102476 ENSMUST00000195137 Gm37245 lincRNA Interval_106973 chr3 102330688 102331104 + 0 NA intron (ENSMUSG00000105891.4, intron 2 of 4) lincRNA-intron (ENSMUSG00000105891.4, intron 2 of 4) -38266 ENSMUSG00000105966.1 ENSMUSG00000105966 ENSMUST00000199507 Gm43242 lincRNA Interval_164228 chr9 33062542 33062849 + 0 NA intron (ENSMUSG00000098519.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000098519.1, intron 1 of 2) 30904 ENSMUSG00000098519.1 ENSMUSG00000098519 ENSMUST00000184476 Gm27166 lincRNA Interval_2596 chr1 41274905 41275605 + 0 NA Intergenic Intergenic -94003 ENSMUSG00000104072.1 ENSMUSG00000104072 ENSMUST00000194002 4930448I06Rik lincRNA Interval_125203 chr5 65335219 65336275 + 0 NA promoter-TSS (ENSMUSG00000029191.16) protein_coding-promoter-TSS (ENSMUSG00000029191.16) -12661 ENSMUSG00000029195.10 ENSMUSG00000029195 ENSMUST00000205084 Klb protein_coding Interval_10051 chr1 165364620 165365316 + 0 NA intron (ENSMUSG00000026571.12, intron 10 of 18) protein_coding-intron (ENSMUSG00000026571.12, intron 10 of 18) -14551 ENSMUSG00000104427.1 ENSMUSG00000104427 ENSMUST00000193181 Gm38368 TEC Interval_58601 chr15 36491011 36491786 + 0 NA TTS (ENSMUSG00000048307.8) protein_coding-TTS (ENSMUSG00000048307.8) 5317 ENSMUSG00000048307.8 ENSMUSG00000048307 ENSMUST00000228941 Ankrd46 protein_coding Interval_6549 chr1 116093698 116094524 + 0 NA intron (ENSMUSG00000070695.4, intron 5 of 23) protein_coding-intron (ENSMUSG00000070695.4, intron 5 of 23) 300302 ENSMUSG00000092948.1 ENSMUSG00000092948 ENSMUST00000175207 Gm23393 miRNA Interval_42301 chr13 11916020 11916643 + 0 NA TTS (ENSMUSG00000021313.16) protein_coding-TTS (ENSMUSG00000021313.16) -23227 ENSMUSG00000098110.1 ENSMUSG00000098110 ENSMUST00000182176 Gm26956 processed_pseudogene Interval_45752 chr13 57721307 57722116 + 0 NA intron (ENSMUSG00000056222.15, intron 2 of 10) protein_coding-intron (ENSMUSG00000056222.15, intron 1 of 9) 186621 ENSMUSG00000056222.15 ENSMUSG00000056222 ENSMUST00000185905 Spock1 protein_coding Interval_24061 chr11 29875802 29876114 + 0 NA intron (ENSMUSG00000044072.14, intron 7 of 41) protein_coding-intron (ENSMUSG00000044072.14, intron 7 of 41) 26497 ENSMUSG00000088135.1 ENSMUSG00000088135 ENSMUST00000157510 Gm22588 snoRNA Interval_49909 chr13 118160925 118161293 + 0 NA Intergenic Intergenic 113789 ENSMUSG00000114713.1 ENSMUSG00000114713 ENSMUST00000225643 Gm9633 processed_pseudogene Interval_41732 chr12 118511690 118512576 + 0 NA Intergenic Intergenic -7099 ENSMUSG00000065348.1 ENSMUSG00000065348 ENSMUST00000083414 Gm25577 snRNA Interval_88510 chr2 5730422 5730906 + 0 NA Intergenic Intergenic -16161 ENSMUSG00000039145.16 ENSMUSG00000039145 ENSMUST00000155927 Camk1d protein_coding Interval_88176 chr19 60340207 60341752 + 0 NA Intergenic Intergenic 99126 ENSMUSG00000099678.1 ENSMUSG00000099678 ENSMUST00000186261 Gm28351 lincRNA Interval_20932 chr10 122198862 122199107 + 0 NA promoter-TSS (ENSMUSG00000112305.1) processed_pseudogene-promoter-TSS (ENSMUSG00000112305.1) -166 ENSMUSG00000112305.1 ENSMUSG00000112305 ENSMUST00000220445 Gm48875 processed_pseudogene Interval_112440 chr4 41286348 41286691 + 0 NA Intergenic Intergenic -16639 ENSMUSG00000065873.1 ENSMUSG00000065873 ENSMUST00000083939 n-R5s183 rRNA Interval_70686 chr17 13015471 13016505 + 0 NA TTS (ENSMUSG00000006818.5) protein_coding-TTS (ENSMUSG00000006818.5) -18988 ENSMUSG00000006818.5 ENSMUSG00000006818 ENSMUST00000233922 Sod2 protein_coding Interval_85915 chr19 33065351 33066047 + 0 NA Intergenic Intergenic -4373 ENSMUSG00000117914.1 ENSMUSG00000117914 ENSMUST00000236508 Gm29863 lincRNA Interval_90364 chr2 30011551 30012168 + 0 NA intron (ENSMUSG00000057738.14, intron 33 of 56) protein_coding-intron (ENSMUSG00000057738.14, intron 33 of 54) 15909 ENSMUSG00000098453.1 ENSMUSG00000098453 ENSMUST00000184313 Mir6997 miRNA Interval_151695 chr7 126097308 126097570 + 0 NA Intergenic Intergenic -15028 ENSMUSG00000046182.8 ENSMUSG00000046182 ENSMUST00000073935 Gsg1l protein_coding Interval_15152 chr10 42930111 42930706 + 0 NA TTS (ENSMUSG00000044770.14) protein_coding-TTS (ENSMUSG00000044770.14) -41611 ENSMUSG00000111086.1 ENSMUSG00000111086 ENSMUST00000214070 Gm48671 lincRNA Interval_78609 chr18 15140193 15140749 + 0 NA intron (ENSMUSG00000036225.15, intron 1 of 4) protein_coding-intron (ENSMUSG00000036225.15, intron 1 of 4) -54311 ENSMUSG00000117613.1 ENSMUSG00000117613 ENSMUST00000235045 Gm2629 lincRNA Interval_54155 chr14 65790296 65791143 + 0 NA Intergenic Intergenic -15218 ENSMUSG00000022033.9 ENSMUSG00000022033 ENSMUST00000139644 Pbk protein_coding Interval_84655 chr19 14688096 14688712 + 0 NA Intergenic Intergenic 29737 ENSMUSG00000103488.1 ENSMUSG00000103488 ENSMUST00000193515 Gm37997 TEC Interval_126684 chr5 92042271 92043340 + 0 NA promoter-TSS (ENSMUSG00000029403.14) protein_coding-promoter-TSS (ENSMUSG00000029403.14) 1078 ENSMUSG00000029403.14 ENSMUSG00000029403 ENSMUST00000201895 Cdkl2 protein_coding Interval_11948 chr1 187407399 187407599 + 0 NA Intergenic Intergenic -30030 ENSMUSG00000104245.1 ENSMUSG00000104245 ENSMUST00000192285 Gm38155 antisense Interval_97570 chr2 139972446 139972696 + 0 NA intron (ENSMUSG00000039033.11, intron 8 of 13) protein_coding-intron (ENSMUSG00000039033.11, intron 8 of 13) 69643 ENSMUSG00000039033.11 ENSMUSG00000039033 ENSMUST00000124949 Tasp1 protein_coding Interval_57456 chr15 11223815 11225192 + 0 NA intron (ENSMUSG00000047497.10, intron 5 of 23) protein_coding-intron (ENSMUSG00000047497.10, intron 5 of 23) 137234 ENSMUSG00000089304.1 ENSMUSG00000089304 ENSMUST00000158679 Gm24844 snoRNA Interval_147961 chr7 75893529 75894285 + 0 NA Intergenic Intergenic 45510 ENSMUSG00000055652.14 ENSMUSG00000055652 ENSMUST00000205887 Klhl25 protein_coding Interval_19021 chr10 93840547 93841308 + 0 NA intron (ENSMUSG00000020020.8, intron 1 of 5) protein_coding-intron (ENSMUSG00000020020.8, intron 1 of 3) 7109 ENSMUSG00000020020.8 ENSMUSG00000020020 ENSMUST00000216224 Usp44 protein_coding Interval_161456 chr8 120549957 120550247 + 0 NA intron (ENSMUSG00000031822.20, intron 1 of 15) protein_coding-intron (ENSMUSG00000031822.20, intron 1 of 15) 11406 ENSMUSG00000098280.1 ENSMUSG00000098280 ENSMUST00000184722 Mir7687 miRNA Interval_19056 chr10 94123084 94123271 + 0 NA intron (ENSMUSG00000020021.4, intron 9 of 20) protein_coding-intron (ENSMUSG00000020021.4, intron 9 of 20) 14438 ENSMUSG00000111539.1 ENSMUSG00000111539 ENSMUST00000214721 Gm48372 TEC Interval_89840 chr2 25907999 25908238 + 0 NA promoter-TSS (ENSMUSG00000058740.14) protein_coding-promoter-TSS (ENSMUSG00000058740.14) 44150 ENSMUSG00000058740.14 ENSMUSG00000058740 ENSMUST00000199269 Kcnt1 protein_coding Interval_11455 chr1 181999534 181999769 + 0 NA intron (ENSMUSG00000022995.16, intron 1 of 13) protein_coding-intron (ENSMUSG00000022995.16, intron 1 of 14) 8035 ENSMUSG00000102760.1 ENSMUSG00000102760 ENSMUST00000191734 Gm37258 TEC Interval_146510 chr7 46516163 46516558 + 0 NA intron (ENSMUSG00000030839.12, intron 9 of 11) protein_coding-intron (ENSMUSG00000030839.12, intron 9 of 10) -3580 ENSMUSG00000110316.1 ENSMUSG00000110316 ENSMUST00000211086 Gm45311 sense_intronic Interval_167905 chr9 74027548 74027830 + 0 NA Intergenic Intergenic -31650 ENSMUSG00000095631.1 ENSMUSG00000095631 ENSMUST00000083215 n-R5s86 rRNA Interval_138470 chr6 88471567 88472335 + 0 NA intron (ENSMUSG00000030079.15, intron 2 of 4) protein_coding-intron (ENSMUSG00000030079.15, intron 2 of 10) 6224 ENSMUSG00000030079.15 ENSMUSG00000030079 ENSMUST00000129035 Ruvbl1 protein_coding Interval_135530 chr6 40030220 40030558 + 0 NA intron (ENSMUSG00000057716.7, intron 2 of 3) protein_coding-intron (ENSMUSG00000057716.7, intron 2 of 3) 3495 ENSMUSG00000103331.1 ENSMUSG00000103331 ENSMUST00000194958 Gm37995 TEC Interval_27967 chr11 71675570 71675984 + 0 NA Intergenic Intergenic -17300 ENSMUSG00000087116.1 ENSMUSG00000087116 ENSMUST00000130837 Gm12324 lincRNA Interval_128878 chr5 115833865 115834422 + 0 NA Intergenic Intergenic -31984 ENSMUSG00000083833.4 ENSMUSG00000083833 ENSMUST00000118829 Gm13841 processed_pseudogene Interval_102264 chr3 20111755 20112109 + 0 NA intron (ENSMUSG00000002428.12, intron 2 of 3) protein_coding-intron (ENSMUSG00000002428.12, intron 23 of 24) 3456 ENSMUSG00000002428.12 ENSMUSG00000002428 ENSMUST00000155635 Hltf protein_coding Interval_4910 chr1 82358959 82359190 + 0 NA intron (ENSMUSG00000026142.15, intron 3 of 6) protein_coding-intron (ENSMUSG00000026142.15, intron 3 of 6) 6857 ENSMUSG00000104493.1 ENSMUSG00000104493 ENSMUST00000194744 Gm19552 TEC Interval_100018 chr2 166555709 166556815 + 0 NA Intergenic Intergenic -47088 ENSMUSG00000085682.2 ENSMUSG00000085682 ENSMUST00000123480 Gm14267 transcribed_processed_pseudogene Interval_68748 chr16 85469208 85469409 + 0 NA intron (ENSMUSG00000041134.15, intron 2 of 3) protein_coding-intron (ENSMUSG00000041134.15, intron 2 of 3) 81109 ENSMUSG00000041134.15 ENSMUSG00000041134 ENSMUST00000162621 Cyyr1 protein_coding Interval_97410 chr2 135891147 135892810 + 0 NA intron (ENSMUSG00000039943.16, intron 1 of 7) protein_coding-intron (ENSMUSG00000039943.16, intron 2 of 35) -79051 ENSMUSG00000086928.1 ENSMUSG00000086928 ENSMUST00000140949 Gm14210 lincRNA Interval_168492 chr9 82487663 82488094 + 0 NA Intergenic Intergenic -24426 ENSMUSG00000088760.1 ENSMUSG00000088760 ENSMUST00000158135 Gm24393 snRNA Interval_84227 chr19 8886360 8889319 + 0 NA TTS (ENSMUSG00000070167.1) snoRNA-TTS (ENSMUSG00000070167.1) 846 ENSMUSG00000070167.1 ENSMUSG00000070167 ENSMUST00000093658 Snora57 snoRNA Interval_151360 chr7 121738299 121738578 + 0 NA intron (ENSMUSG00000000216.8, intron 2 of 12) protein_coding-intron (ENSMUSG00000000216.8, intron 2 of 12) 3959 ENSMUSG00000000216.8 ENSMUSG00000000216 ENSMUST00000000221 Scnn1g protein_coding Interval_149227 chr7 96437563 96437755 + 0 NA TTS (ENSMUSG00000048078.16) protein_coding-TTS (ENSMUSG00000048078.16) -1642 ENSMUSG00000082780.2 ENSMUSG00000082780 ENSMUST00000117302 Rps11-ps5 processed_pseudogene Interval_112291 chr4 40156805 40157133 + 0 NA intron (ENSMUSG00000028405.9, intron 1 of 20) protein_coding-intron (ENSMUSG00000028405.9, intron 1 of 20) -6750 ENSMUSG00000028405.9 ENSMUSG00000028405 ENSMUST00000135787 Aco1 protein_coding Interval_53144 chr14 54699450 54700126 + 0 NA promoter-TSS (ENSMUSG00000114865.2) protein_coding-promoter-TSS (ENSMUSG00000114865.2) -988 ENSMUSG00000114865.2 ENSMUSG00000114865 ENSMUST00000227947 Gm29776 protein_coding Interval_70281 chr17 8161142 8161404 + 0 NA Intergenic Intergenic -4247 ENSMUSG00000069135.11 ENSMUSG00000069135 ENSMUST00000161898 Fgfr1op protein_coding Interval_74933 chr17 57492883 57493424 + 0 NA Intergenic Intergenic 52352 ENSMUSG00000090655.2 ENSMUSG00000090655 ENSMUST00000234162 Vmn2r120 protein_coding Interval_144117 chr7 19499059 19499526 + 0 NA Intergenic Intergenic 9075 ENSMUSG00000057667.7 ENSMUSG00000057667 ENSMUST00000077408 Bloc1s3 protein_coding Interval_169845 chr9 102449657 102449872 + 0 NA Intergenic Intergenic -37026 ENSMUSG00000111859.1 ENSMUSG00000111859 ENSMUST00000213941 Gm47983 TEC Interval_123215 chr5 30692984 30693729 + 0 NA Intergenic Intergenic 26358 ENSMUSG00000029177.9 ENSMUSG00000029177 ENSMUST00000134372 Cenpa protein_coding Interval_48262 chr13 97502940 97504162 + 0 NA Intergenic Intergenic -7653 ENSMUSG00000114926.1 ENSMUSG00000114926 ENSMUST00000225874 Gm2379 lincRNA Interval_85988 chr19 34674947 34675404 + 0 NA exon (ENSMUSG00000009378.4, exon 5 of 7) protein_coding-exon (ENSMUSG00000009378.4, exon 5 of 7) 16372 ENSMUSG00000009378.4 ENSMUSG00000009378 ENSMUST00000235650 Slc16a12 protein_coding Interval_6355 chr1 106220524 106222499 + 0 NA exon (ENSMUSG00000103291.1, exon 1 of 1) TEC-exon (ENSMUSG00000103291.1, exon 1 of 1) 2197 ENSMUSG00000103291.1 ENSMUSG00000103291 ENSMUST00000194600 Gm38235 TEC Interval_139936 chr6 112902962 112903718 + 0 NA intron (ENSMUSG00000030257.16, intron 1 of 21) protein_coding-intron (ENSMUSG00000030257.16, intron 1 of 9) -43697 ENSMUSG00000108103.1 ENSMUSG00000108103 ENSMUST00000204406 Gm44081 lincRNA Interval_109851 chr3 148958888 148959744 + 0 NA intron (ENSMUSG00000028184.12, intron 1 of 19) protein_coding-intron (ENSMUSG00000028184.12, intron 1 of 2) -29836 ENSMUSG00000104786.1 ENSMUSG00000104786 ENSMUST00000196445 Gm43573 antisense Interval_141227 chr6 125886164 125886420 + 0 NA intron (ENSMUSG00000038115.16, intron 15 of 25) protein_coding-intron (ENSMUSG00000038115.16, intron 15 of 15) 1877 ENSMUSG00000088959.1 ENSMUSG00000088959 ENSMUST00000158334 Gm24947 snRNA Interval_125389 chr5 66620129 66620784 + 0 NA Intergenic Intergenic -24886 ENSMUSG00000106706.1 ENSMUSG00000106706 ENSMUST00000201865 C530043K16Rik TEC Interval_70719 chr17 13836131 13836470 + 0 NA intron (ENSMUSG00000068036.16, intron 12 of 32) protein_coding-intron (ENSMUSG00000068036.16, intron 12 of 18) 26503 ENSMUSG00000089883.1 ENSMUSG00000089883 ENSMUST00000160079 Gm3355 processed_pseudogene Interval_166389 chr9 58836102 58836359 + 0 NA intron (ENSMUSG00000032338.9, intron 1 of 7) protein_coding-intron (ENSMUSG00000032338.9, intron 1 of 7) 12818 ENSMUSG00000032338.9 ENSMUSG00000032338 ENSMUST00000034889 Hcn4 protein_coding Interval_70618 chr17 12371719 12372812 + 0 NA Intergenic Intergenic -6394 ENSMUSG00000059481.5 ENSMUSG00000059481 ENSMUST00000232767 Plg protein_coding Interval_44213 chr13 42244943 42245264 + 0 NA Intergenic Intergenic -56373 ENSMUSG00000021367.8 ENSMUSG00000021367 ENSMUST00000021796 Edn1 protein_coding Interval_65085 chr16 18938866 18939166 + 0 NA intron (ENSMUSG00000099908.1, intron 16 of 23) protein_coding-intron (ENSMUSG00000022702.16, intron 15 of 24) 1615 ENSMUSG00000082130.1 ENSMUSG00000082130 ENSMUST00000120899 Gm15799 processed_pseudogene Interval_34500 chr12 4694207 4694716 + 0 NA intron (ENSMUSG00000020640.10, intron 29 of 39) protein_coding-intron (ENSMUSG00000020640.10, intron 28 of 38) -4535 ENSMUSG00000091732.1 ENSMUSG00000091732 ENSMUST00000080062 Gm17541 processed_pseudogene Interval_8225 chr1 136596401 136597193 + 0 NA Intergenic Intergenic 8671 ENSMUSG00000104366.1 ENSMUSG00000104366 ENSMUST00000193674 4933409D19Rik lincRNA Interval_25056 chr11 43556498 43557086 + 0 NA TTS (ENSMUSG00000044707.7) protein_coding-TTS (ENSMUSG00000044707.7) 24324 ENSMUSG00000085239.1 ENSMUSG00000085239 ENSMUST00000130874 Gm12150 antisense Interval_170919 chr9 112124656 112125439 + 0 NA intron (ENSMUSG00000032503.18, intron 15 of 18) protein_coding-intron (ENSMUSG00000032503.18, intron 15 of 18) -6336 ENSMUSG00000065441.2 ENSMUSG00000065441 ENSMUST00000083507 Mir128-2 miRNA Interval_96133 chr2 119954236 119954541 + 0 NA intron (ENSMUSG00000033943.15, intron 18 of 20) protein_coding-intron (ENSMUSG00000033943.15, intron 20 of 24) -18515 ENSMUSG00000033902.12 ENSMUSG00000033902 ENSMUST00000148161 Mapkbp1 protein_coding Interval_156329 chr8 47463803 47464073 + 0 NA Intergenic Intergenic 23520 ENSMUSG00000092710.1 ENSMUSG00000092710 ENSMUST00000174969 Gm22857 snoRNA Interval_94796 chr2 94398359 94398749 + 0 NA intron (ENSMUSG00000027194.16, intron 1 of 24) protein_coding-intron (ENSMUSG00000027194.16, intron 1 of 19) 6437 ENSMUSG00000027194.16 ENSMUSG00000027194 ENSMUST00000150266 Ttc17 protein_coding Interval_122494 chr5 23432614 23435413 + 0 NA promoter-TSS (ENSMUSG00000029004.15) protein_coding-promoter-TSS (ENSMUSG00000029004.15) -704 ENSMUSG00000073147.3 ENSMUSG00000073147 ENSMUST00000189045 5031425E22Rik lincRNA Interval_59405 chr15 52463306 52464561 + 0 NA Intergenic Intergenic 14295 ENSMUSG00000057262.2 ENSMUSG00000057262 ENSMUST00000081993 Rpl15-ps6 processed_pseudogene Interval_15489 chr10 48880186 48881995 + 0 NA Intergenic Intergenic 12512 ENSMUSG00000111433.1 ENSMUSG00000111433 ENSMUST00000215914 Gm47378 TEC Interval_113601 chr4 56931929 56932819 + 0 NA intron (ENSMUSG00000055296.14, intron 3 of 16) protein_coding-intron (ENSMUSG00000055296.14, intron 3 of 17) 15050 ENSMUSG00000055296.14 ENSMUSG00000055296 ENSMUST00000155625 Tmem245 protein_coding Interval_85161 chr19 23224578 23225324 + 0 NA intron (ENSMUSG00000024943.9, intron 17 of 23) protein_coding-intron (ENSMUSG00000024943.9, intron 17 of 24) 47648 ENSMUSG00000024943.9 ENSMUSG00000024943 ENSMUST00000224723 Smc5 protein_coding Interval_51425 chr14 27413849 27414402 + 0 NA Intergenic Intergenic -33275 ENSMUSG00000093034.1 ENSMUSG00000093034 ENSMUST00000175293 Gm23633 miRNA Interval_148871 chr7 89508541 89508760 + 0 NA TTS (ENSMUSG00000039405.7) protein_coding-TTS (ENSMUSG00000039405.7) -1357 ENSMUSG00000030623.4 ENSMUSG00000030623 ENSMUST00000208814 Prss23os antisense Interval_110606 chr4 4585076 4585284 + 0 NA Intergenic Intergenic -56461 ENSMUSG00000085155.3 ENSMUSG00000085155 ENSMUST00000136880 Gm11780 processed_pseudogene Interval_133218 chr5 150638060 150638264 + 0 NA exon (ENSMUSG00000029655.17, exon 6 of 6) protein_coding-exon (ENSMUSG00000029655.17, exon 6 of 6) 28021 ENSMUSG00000029655.17 ENSMUSG00000029655 ENSMUST00000201390 N4bp2l2 protein_coding Interval_89796 chr2 25498024 25498430 + 0 NA TTS (ENSMUSG00000015083.11) protein_coding-TTS (ENSMUSG00000015083.11) 2016 ENSMUSG00000015083.11 ENSMUSG00000015083 ENSMUST00000133255 C8g protein_coding Interval_7974 chr1 134973544 134973775 + 0 NA TTS (ENSMUSG00000026429.9) protein_coding-TTS (ENSMUSG00000026429.9) 11041 ENSMUSG00000026429.9 ENSMUSG00000026429 ENSMUST00000139617 Ube2t protein_coding Interval_132045 chr5 142470450 142470656 + 0 NA exon (ENSMUSG00000039623.13, exon 9 of 17) protein_coding-exon (ENSMUSG00000039623.13, exon 9 of 17) 6609 ENSMUSG00000039623.13 ENSMUSG00000039623 ENSMUST00000197293 Ap5z1 protein_coding Interval_107390 chr3 107208139 107208834 + 0 NA Intergenic Intergenic 13246 ENSMUSG00000046213.9 ENSMUSG00000046213 ENSMUST00000029504 Cym protein_coding Interval_129788 chr5 122353970 122355120 + 0 NA promoter-TSS (ENSMUSG00000038569.13) protein_coding-promoter-TSS (ENSMUSG00000038569.13) -325 ENSMUSG00000038569.13 ENSMUSG00000038569 ENSMUST00000200653 Rad9b protein_coding Interval_27966 chr11 71674511 71674748 + 0 NA Intergenic Intergenic -16152 ENSMUSG00000087116.1 ENSMUSG00000087116 ENSMUST00000130837 Gm12324 lincRNA Interval_96422 chr2 122368512 122370955 + 0 NA promoter-TSS (ENSMUSG00000033256.14) protein_coding-promoter-TSS (ENSMUSG00000033256.14) -596 ENSMUSG00000033256.14 ENSMUSG00000033256 ENSMUST00000135848 Shf protein_coding Interval_126506 chr5 89352946 89353190 + 0 NA Intergenic Intergenic 82560 ENSMUSG00000035540.12 ENSMUSG00000035540 ENSMUST00000200534 Gc protein_coding Interval_62403 chr15 91899674 91901021 + 0 NA exon (ENSMUSG00000044021.14, exon 28 of 43) protein_coding-exon (ENSMUSG00000044021.14, exon 28 of 43) 22568 ENSMUSG00000044021.14 ENSMUSG00000044021 ENSMUST00000088547 Muc19 protein_coding Interval_111840 chr4 31823298 31824351 + 0 NA Intergenic Intergenic -161843 ENSMUSG00000028284.13 ENSMUSG00000028284 ENSMUST00000131310 Map3k7 protein_coding Interval_153451 chr7 144872497 144873553 + 0 NA Intergenic Intergenic -23516 ENSMUSG00000031073.6 ENSMUSG00000031073 ENSMUST00000207229 Fgf15 protein_coding Interval_26446 chr11 57911755 57913645 + 0 NA Intergenic Intergenic 31804 ENSMUSG00000084223.1 ENSMUSG00000084223 ENSMUST00000119500 Gm12244 processed_pseudogene Interval_128370 chr5 112859738 112860057 + 0 NA intron (ENSMUSG00000072720.9, intron 6 of 16) protein_coding-intron (ENSMUSG00000072720.9, intron 11 of 43) 12599 ENSMUSG00000072720.9 ENSMUSG00000072720 ENSMUST00000183273 Myo18b protein_coding Interval_83565 chr18 89739431 89739633 + 0 NA intron (ENSMUSG00000073514.4, intron 1 of 7) protein_coding-intron (ENSMUSG00000073514.4, intron 1 of 7) 6527 ENSMUSG00000092792.1 ENSMUSG00000092792 ENSMUST00000175051 Gm22694 miRNA Interval_86095 chr19 36553933 36555361 + 0 NA promoter-TSS (ENSMUSG00000041180.13) protein_coding-promoter-TSS (ENSMUSG00000041180.13) -30842 ENSMUSG00000041180.13 ENSMUSG00000041180 ENSMUST00000142404 Hectd2 protein_coding Interval_38449 chr12 79097138 79097558 + 0 NA intron (ENSMUSG00000112489.1, intron 3 of 3) lincRNA-intron (ENSMUSG00000112489.1, intron 4 of 4) 6591 ENSMUSG00000112489.1 ENSMUSG00000112489 ENSMUST00000219976 9230116L04Rik lincRNA Interval_46274 chr13 63302854 63303078 + 0 NA TTS (ENSMUSG00000021458.17) protein_coding-TTS (ENSMUSG00000021458.17) -1683 ENSMUSG00000092741.2 ENSMUSG00000092741 ENSMUST00000175000 Mir3074-1 miRNA Interval_111735 chr4 27004055 27004820 + 0 NA Intergenic Intergenic 122072 ENSMUSG00000083447.1 ENSMUSG00000083447 ENSMUST00000120562 Gm11904 processed_pseudogene Interval_38587 chr12 80293318 80293691 + 0 NA Intergenic Intergenic 34061 ENSMUSG00000112336.1 ENSMUSG00000112336 ENSMUST00000218666 Gm47766 antisense Interval_52904 chr14 51961371 51961805 + 0 NA Intergenic Intergenic 27239 ENSMUSG00000097633.2 ENSMUSG00000097633 ENSMUST00000181008 Gm16617 antisense Interval_89335 chr2 19438985 19439161 + 0 NA Intergenic Intergenic -6590 ENSMUSG00000026735.2 ENSMUSG00000026735 ENSMUST00000028068 Ptf1a protein_coding Interval_122157 chr5 18380915 18381194 + 0 NA Intergenic Intergenic -20699 ENSMUSG00000057614.6 ENSMUSG00000057614 ENSMUST00000074694 Gnai1 protein_coding Interval_160560 chr8 110655930 110656433 + 0 NA intron (ENSMUSG00000010936.11, intron 12 of 16) protein_coding-intron (ENSMUSG00000010936.11, intron 12 of 18) 10601 ENSMUSG00000010936.11 ENSMUSG00000010936 ENSMUST00000213015 Vac14 protein_coding Interval_79248 chr18 27462539 27463400 + 0 NA Intergenic Intergenic -135675 ENSMUSG00000046636.5 ENSMUSG00000046636 ENSMUST00000050143 Gm7729 unprocessed_pseudogene Interval_46147 chr13 62015395 62016396 + 0 NA promoter-TSS (ENSMUSG00000113836.1) transcribed_processed_pseudogene-promoter-TSS (ENSMUSG00000113836.1) -89 ENSMUSG00000113836.1 ENSMUSG00000113836 ENSMUST00000221814 Gm3325 transcribed_processed_pseudogene Interval_64327 chr16 10522915 10523374 + 0 NA intron (ENSMUSG00000022504.10, intron 16 of 19) protein_coding-intron (ENSMUSG00000022504.10, intron 15 of 18) 19910 ENSMUSG00000038055.12 ENSMUSG00000038055 ENSMUST00000038281 Dexi protein_coding Interval_98402 chr2 152092911 152095598 + 0 NA exon (ENSMUSG00000060257.2, exon 2 of 2) protein_coding-exon (ENSMUSG00000060257.2, exon 2 of 2) -11262 ENSMUSG00000032802.8 ENSMUSG00000032802 ENSMUST00000041500 Srxn1 protein_coding Interval_171405 chr9 117775074 117775268 + 0 NA intron (ENSMUSG00000039607.17, intron 1 of 3) protein_coding-intron (ENSMUSG00000039607.17, intron 1 of 3) 97510 ENSMUSG00000039607.17 ENSMUSG00000039607 ENSMUST00000210659 Rbms3 protein_coding Interval_159535 chr8 95309033 95310968 + 0 NA promoter-TSS (ENSMUSG00000090206.8) protein_coding-promoter-TSS (ENSMUSG00000090206.8) -1602 ENSMUSG00000090206.8 ENSMUSG00000090206 ENSMUST00000162294 Tepp protein_coding Interval_101529 chr3 4137762 4138367 + 0 NA Intergenic Intergenic -73654 ENSMUSG00000091223.2 ENSMUSG00000091223 ENSMUST00000170943 Gm8775 processed_pseudogene Interval_173424 chrX 93280702 93282397 + 0 NA Intergenic Intergenic -4896 ENSMUSG00000035277.15 ENSMUSG00000035277 ENSMUST00000113947 Arx protein_coding Interval_69479 chr16 93796660 93797011 + 0 NA intron (ENSMUSG00000022946.10, intron 1 of 2) protein_coding-intron (ENSMUSG00000022946.10, intron 27 of 36) -1934 ENSMUSG00000097768.2 ENSMUSG00000097768 ENSMUST00000180967 2310043M15Rik antisense Interval_67813 chr16 57393133 57393762 + 0 NA intron (ENSMUSG00000043336.14, intron 1 of 4) protein_coding-intron (ENSMUSG00000043336.14, intron 1 of 4) 40354 ENSMUSG00000043336.14 ENSMUSG00000043336 ENSMUST00000159414 Filip1l protein_coding Interval_26986 chr11 62168203 62168504 + 0 NA intron (ENSMUSG00000042331.13, intron 12 of 14) protein_coding-intron (ENSMUSG00000042331.13, intron 10 of 12) 50934 ENSMUSG00000118644.1 ENSMUSG00000118644 ENSMUST00000239393 AL592080.1 unprocessed_pseudogene Interval_58754 chr15 37791347 37792487 + 0 NA promoter-TSS (ENSMUSG00000051359.15) protein_coding-promoter-TSS (ENSMUSG00000051359.15) -26516 ENSMUSG00000086313.1 ENSMUSG00000086313 ENSMUST00000156011 Gm15940 sense_intronic Interval_57008 chr15 4011071 4011555 + 0 NA intron (ENSMUSG00000097662.1, intron 2 of 2) lincRNA-intron (ENSMUSG00000097662.1, intron 2 of 2) 13179 ENSMUSG00000087221.3 ENSMUSG00000087221 ENSMUST00000187080 BC037032 processed_transcript Interval_144398 chr7 24906680 24908045 + 0 NA promoter-TSS (ENSMUSG00000040940.18) protein_coding-promoter-TSS (ENSMUSG00000040940.18) 3006 ENSMUSG00000040940.18 ENSMUSG00000040940 ENSMUST00000132786 Arhgef1 protein_coding Interval_127221 chr5 101537609 101539147 + 0 NA Intergenic Intergenic -32049 ENSMUSG00000106610.1 ENSMUSG00000106610 ENSMUST00000199021 Gm43103 processed_pseudogene Interval_108951 chr3 133559534 133560146 + 0 NA intron (ENSMUSG00000105085.1, intron 1 of 2) antisense-intron (ENSMUSG00000105085.1, intron 1 of 2) 14743 ENSMUSG00000105085.1 ENSMUSG00000105085 ENSMUST00000199268 Gm42567 antisense Interval_107028 chr3 103046434 103046805 + 0 NA intron (ENSMUSG00000068823.10, intron 8 of 17) protein_coding-intron (ENSMUSG00000068823.10, intron 10 of 19) 6620 ENSMUSG00000068823.10 ENSMUSG00000068823 ENSMUST00000197844 Csde1 protein_coding Interval_138576 chr6 89508590 89509246 + 0 NA intron (ENSMUSG00000030086.16, intron 4 of 5) protein_coding-intron (ENSMUSG00000030086.16, intron 4 of 7) 18537 ENSMUSG00000107680.1 ENSMUSG00000107680 ENSMUST00000205126 Gm43903 TEC Interval_132593 chr5 146597798 146598179 + 0 NA intron (ENSMUSG00000105907.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000105907.1, intron 1 of 2) 2114 ENSMUSG00000105907.1 ENSMUSG00000105907 ENSMUST00000200363 Gm34333 lincRNA Interval_27541 chr11 68553862 68554383 + 0 NA Intergenic Intergenic -2064 ENSMUSG00000048329.7 ENSMUSG00000048329 ENSMUST00000053211 Mfsd6l protein_coding Interval_10434 chr1 170848303 170848864 + 0 NA intron (ENSMUSG00000026663.6, intron 4 of 15) protein_coding-intron (ENSMUSG00000026663.6, intron 4 of 15) -15712 ENSMUSG00000096547.1 ENSMUSG00000096547 ENSMUST00000179933 Gm25235 snRNA Interval_51639 chr14 30997275 30997674 + 0 NA Intergenic Intergenic 4198 ENSMUSG00000021917.16 ENSMUSG00000021917 ENSMUST00000226374 Spcs1 protein_coding Interval_173726 chrX 103129077 103130154 + 0 NA Intergenic Intergenic 35792 ENSMUSG00000048949.8 ENSMUSG00000048949 ENSMUST00000133472 Gm6206 processed_pseudogene Interval_41589 chr12 116597061 116597947 + 0 NA TTS (ENSMUSG00000101814.1) processed_pseudogene-TTS (ENSMUSG00000101814.1) 251 ENSMUSG00000101814.1 ENSMUSG00000101814 ENSMUST00000186869 Gm17807 processed_pseudogene Interval_109109 chr3 135853748 135855561 + 0 NA intron (ENSMUSG00000053897.15, intron 3 of 8) protein_coding-intron (ENSMUSG00000053897.15, intron 2 of 7) -5694 ENSMUSG00000106290.1 ENSMUSG00000106290 ENSMUST00000197889 Gm43429 TEC Interval_66924 chr16 38556947 38559137 + 0 NA promoter-TSS (ENSMUSG00000002845.14) protein_coding-promoter-TSS (ENSMUSG00000002845.14) -4770 ENSMUSG00000002845.14 ENSMUSG00000002845 ENSMUST00000165140 Tmem39a protein_coding Interval_70450 chr17 10308727 10310098 + 0 NA intron (ENSMUSG00000062078.15, intron 1 of 6) protein_coding-intron (ENSMUSG00000062078.15, intron 1 of 6) 9949 ENSMUSG00000062078.15 ENSMUSG00000062078 ENSMUST00000233684 Qk protein_coding Interval_115532 chr4 100223280 100224454 + 0 NA intron (ENSMUSG00000035305.5, intron 1 of 8) protein_coding-intron (ENSMUSG00000035305.5, intron 1 of 8) 104246 ENSMUSG00000086385.1 ENSMUSG00000086385 ENSMUST00000134206 Gm12701 sense_intronic Interval_130469 chr5 127947197 127947906 + 0 NA intron (ENSMUSG00000034310.8, intron 4 of 8) protein_coding-intron (ENSMUSG00000034310.8, intron 4 of 8) 69020 ENSMUSG00000085328.2 ENSMUSG00000085328 ENSMUST00000164420 Gm17131 unprocessed_pseudogene Interval_67673 chr16 55875718 55876990 + 0 NA intron (ENSMUSG00000075033.4, intron 2 of 5) protein_coding-intron (ENSMUSG00000075033.4, intron 2 of 5) 8137 ENSMUSG00000116919.1 ENSMUSG00000116919 ENSMUST00000232524 Gm17809 processed_pseudogene Interval_58313 chr15 32257536 32258941 + 0 NA intron (ENSMUSG00000022231.10, intron 1 of 7) protein_coding-intron (ENSMUSG00000022231.10, intron 1 of 22) 13413 ENSMUSG00000022231.10 ENSMUSG00000022231 ENSMUST00000227429 Sema5a protein_coding Interval_8367 chr1 138205574 138206491 + 0 NA Intergenic Intergenic -13905 ENSMUSG00000099459.2 ENSMUSG00000099459 ENSMUST00000187489 Gm28556 lincRNA Interval_115358 chr4 98049808 98050036 + 0 NA intron (ENSMUSG00000028565.18, intron 6 of 7) protein_coding-intron (ENSMUSG00000028565.18, intron 6 of 9) 100339 ENSMUSG00000081096.2 ENSMUSG00000081096 ENSMUST00000120186 Gm12691 transcribed_processed_pseudogene Interval_147994 chr7 76709423 76710499 + 0 NA intron (ENSMUSG00000025754.11, intron 19 of 22) protein_coding-intron (ENSMUSG00000025754.11, intron 13 of 14) -10244 ENSMUSG00000108771.1 ENSMUSG00000108771 ENSMUST00000206401 Gm45210 TEC Interval_50539 chr14 14803705 14805178 + 0 NA intron (ENSMUSG00000042567.20, intron 1 of 35) protein_coding-intron (ENSMUSG00000042567.20, intron 1 of 35) 1026 ENSMUSG00000042567.20 ENSMUSG00000042567 ENSMUST00000136826 Nek10 protein_coding Interval_24021 chr11 29566074 29567063 + 0 NA intron (ENSMUSG00000020461.10, intron 1 of 3) protein_coding-intron (ENSMUSG00000020461.10, intron 8 of 11) -13558 ENSMUSG00000081575.1 ENSMUSG00000081575 ENSMUST00000118692 Gm12090 processed_pseudogene Interval_38120 chr12 75766636 75767316 + 0 NA Intergenic Intergenic -31280 ENSMUSG00000021054.6 ENSMUSG00000021054 ENSMUST00000220285 Sgpp1 protein_coding Interval_118021 chr4 128248948 128249258 + 0 NA intron (ENSMUSG00000028804.20, intron 5 of 70) protein_coding-intron (ENSMUSG00000028804.20, intron 5 of 12) 11854 ENSMUSG00000048686.4 ENSMUSG00000048686 ENSMUST00000053830 Hmgb4 protein_coding Interval_103350 chr3 39978855 39979569 + 0 NA Intergenic Intergenic 155635 ENSMUSG00000106948.1 ENSMUSG00000106948 ENSMUST00000202316 Gm42785 processed_pseudogene Interval_109861 chr3 149092792 149093215 + 0 NA Intergenic Intergenic 64071 ENSMUSG00000065270.1 ENSMUSG00000065270 ENSMUST00000083336 Gm25127 snRNA Interval_88665 chr2 9341229 9341452 + 0 NA Intergenic Intergenic -11180 ENSMUSG00000079604.9 ENSMUSG00000079604 ENSMUST00000154223 Gm13219 lincRNA Interval_166905 chr9 63840514 63841489 + 0 NA Intergenic Intergenic -39204 ENSMUSG00000111137.1 ENSMUSG00000111137 ENSMUST00000215986 Gm2553 processed_pseudogene Interval_121810 chr5 8422172 8424965 + 0 NA promoter-TSS (ENSMUSG00000002297.16) protein_coding-promoter-TSS (ENSMUSG00000002297.16) 710 ENSMUSG00000054099.11 ENSMUSG00000054099 ENSMUST00000198119 Slc25a40 protein_coding Interval_50532 chr14 14721526 14722340 + 0 NA intron (ENSMUSG00000021733.11, intron 2 of 25) protein_coding-intron (ENSMUSG00000021733.11, intron 1 of 24) 18854 ENSMUSG00000021733.11 ENSMUSG00000021733 ENSMUST00000225613 Slc4a7 protein_coding Interval_82181 chr18 68492065 68493900 + 0 NA Intergenic Intergenic 60189 ENSMUSG00000118288.1 ENSMUSG00000118288 ENSMUST00000236693 Gm50258 processed_pseudogene Interval_77219 chr17 87435284 87435555 + 0 NA TTS (ENSMUSG00000036438.14) protein_coding-TTS (ENSMUSG00000036438.14) -7784 ENSMUSG00000036557.8 ENSMUSG00000036557 ENSMUST00000189487 Stpg4 protein_coding Interval_129260 chr5 118495111 118495420 + 0 NA intron (ENSMUSG00000082365.2, intron 1 of 1) transcribed_processed_pseudogene-intron (ENSMUSG00000082365.2, intron 1 of 1) 8298 ENSMUSG00000082365.2 ENSMUSG00000082365 ENSMUST00000119191 Gm15754 transcribed_processed_pseudogene Interval_166004 chr9 55355422 55356194 + 0 NA intron (ENSMUSG00000032313.11, intron 1 of 2) protein_coding-intron (ENSMUSG00000032313.11, intron 1 of 10) 22607 ENSMUSG00000032313.11 ENSMUSG00000032313 ENSMUST00000130465 Tmem266 protein_coding Interval_43331 chr13 29300594 29300944 + 0 NA intron (ENSMUSG00000006191.17, intron 15 of 16) protein_coding-intron (ENSMUSG00000006191.17, intron 15 of 16) -64149 ENSMUSG00000086423.1 ENSMUSG00000086423 ENSMUST00000137593 Gm11364 sense_intronic Interval_123868 chr5 36118379 36118595 + 0 NA intron (ENSMUSG00000029093.14, intron 3 of 7) protein_coding-intron (ENSMUSG00000029093.14, intron 3 of 26) -85534 ENSMUSG00000043430.5 ENSMUSG00000043430 ENSMUST00000052224 Psapl1 protein_coding Interval_88606 chr2 6595051 6595240 + 0 NA intron (ENSMUSG00000002107.18, intron 8 of 13) protein_coding-intron (ENSMUSG00000002107.18, intron 10 of 15) 115455 ENSMUSG00000102599.1 ENSMUSG00000102599 ENSMUST00000194293 Gm38386 TEC Interval_148924 chr7 90107480 90108188 + 0 NA exon (ENSMUSG00000062235.6, exon 1 of 1) processed_pseudogene-exon (ENSMUSG00000062235.6, exon 1 of 1) 134 ENSMUSG00000062235.6 ENSMUSG00000062235 ENSMUST00000058881 Gm5341 processed_pseudogene Interval_36685 chr12 51994760 51994948 + 0 NA promoter-TSS (ENSMUSG00000112064.1) processed_pseudogene-promoter-TSS (ENSMUSG00000112064.1) -182 ENSMUSG00000112064.1 ENSMUSG00000112064 ENSMUST00000218223 Gm47399 processed_pseudogene Interval_146562 chr7 46845166 46847589 + 0 NA promoter-TSS (ENSMUSG00000063229.15) protein_coding-promoter-TSS (ENSMUSG00000063229.15) 521 ENSMUSG00000063229.15 ENSMUSG00000063229 ENSMUST00000210198 Ldha protein_coding Interval_38124 chr12 75804657 75804847 + 0 NA Intergenic Intergenic -13598 ENSMUSG00000063450.14 ENSMUSG00000063450 ENSMUST00000151286 Syne2 protein_coding Interval_103798 chr3 53040962 53042411 + 0 NA promoter-TSS (ENSMUSG00000104850.1) antisense-promoter-TSS (ENSMUSG00000104850.1) 69 ENSMUSG00000104850.1 ENSMUSG00000104850 ENSMUST00000197735 Gm42901 antisense Interval_140590 chr6 119911625 119912704 + 0 NA intron (ENSMUSG00000030166.14, intron 2 of 3) protein_coding-intron (ENSMUSG00000030166.14, intron 2 of 11) -5918 ENSMUSG00000030166.14 ENSMUSG00000030166 ENSMUST00000204319 Rad52 protein_coding Interval_107026 chr3 103037179 103037413 + 0 NA intron (ENSMUSG00000068823.10, intron 3 of 19) protein_coding-intron (ENSMUSG00000068823.10, intron 2 of 19) -2703 ENSMUSG00000068823.10 ENSMUSG00000068823 ENSMUST00000197844 Csde1 protein_coding Interval_25785 chr11 51706489 51706742 + 0 NA intron (ENSMUSG00000036391.16, intron 18 of 22) protein_coding-intron (ENSMUSG00000036391.16, intron 18 of 22) -17741 ENSMUSG00000007777.9 ENSMUSG00000007777 ENSMUST00000109098 0610009B22Rik protein_coding Interval_42098 chr13 8761600 8761878 + 0 NA TTS (ENSMUSG00000052551.16) protein_coding-TTS (ENSMUSG00000052551.16) 36663 ENSMUSG00000113391.1 ENSMUSG00000113391 ENSMUST00000221553 Gm48327 TEC Interval_80077 chr18 37333360 37334035 + 0 NA promoter-TSS (ENSMUSG00000051678.4) protein_coding-promoter-TSS (ENSMUSG00000051678.4) -224 ENSMUSG00000051678.4 ENSMUSG00000051678 ENSMUST00000061717 Pcdhb6 protein_coding Interval_46653 chr13 68167534 68168240 + 0 NA Intergenic Intergenic -13407 ENSMUSG00000113342.1 ENSMUSG00000113342 ENSMUST00000221571 AA414992 TEC Interval_5439 chr1 88779793 88780587 + 0 NA Intergenic Intergenic 25300 ENSMUSG00000097398.2 ENSMUSG00000097398 ENSMUST00000180596 Platr5 lincRNA Interval_149632 chr7 100190538 100191312 + 0 NA intron (ENSMUSG00000109186.1, intron 1 of 1) antisense-intron (ENSMUSG00000109186.1, intron 1 of 1) 7423 ENSMUSG00000109435.1 ENSMUSG00000109435 ENSMUST00000207698 Gm7067 processed_pseudogene Interval_6732 chr1 119047642 119050481 + 0 NA intron (ENSMUSG00000048402.14, intron 1 of 6) protein_coding-intron (ENSMUSG00000048402.14, intron 1 of 13) 4278 ENSMUSG00000048402.14 ENSMUSG00000048402 ENSMUST00000159678 Gli2 protein_coding Interval_72072 chr17 27839215 27840503 + 0 NA promoter-TSS (ENSMUSG00000024217.10) protein_coding-promoter-TSS (ENSMUSG00000024217.10) -276 ENSMUSG00000024217.10 ENSMUSG00000024217 ENSMUST00000233657 Snrpc protein_coding Interval_154909 chr8 24990708 24990950 + 0 NA intron (ENSMUSG00000031555.15, intron 7 of 7) protein_coding-intron (ENSMUSG00000031555.15, intron 10 of 22) 6961 ENSMUSG00000031555.15 ENSMUSG00000031555 ENSMUST00000211319 Adam9 protein_coding Interval_24295 chr11 32157924 32158821 + 0 NA Intergenic Intergenic -26633 ENSMUSG00000081613.1 ENSMUSG00000081613 ENSMUST00000121140 Gm12109 processed_pseudogene Interval_4649 chr1 75662315 75663261 + 0 NA Intergenic Intergenic 26398 ENSMUSG00000082012.1 ENSMUSG00000082012 ENSMUST00000121823 Gm5257 processed_pseudogene Interval_46277 chr13 63321430 63322262 + 0 NA intron (ENSMUSG00000021461.17, intron 5 of 5) protein_coding-intron (ENSMUSG00000021461.17, intron 13 of 15) -7710 ENSMUSG00000089854.2 ENSMUSG00000089854 ENSMUST00000160065 Gm16133 antisense Interval_10897 chr1 176724015 176725618 + 0 NA Intergenic Intergenic 22166 ENSMUSG00000103634.1 ENSMUSG00000103634 ENSMUST00000192113 3110062G12Rik TEC Interval_118407 chr4 131195502 131196396 + 0 NA Intergenic Intergenic -43328 ENSMUSG00000088041.1 ENSMUSG00000088041 ENSMUST00000157416 Gm25261 snoRNA Interval_18356 chr10 85163302 85163763 + 0 NA intron (ENSMUSG00000020038.10, intron 1 of 12) protein_coding-intron (ENSMUSG00000020038.10, intron 1 of 12) -12176 ENSMUSG00000020038.10 ENSMUSG00000020038 ENSMUST00000214675 Cry1 protein_coding Interval_90923 chr2 33489135 33490201 + 0 NA promoter-TSS (ENSMUSG00000086939.1) lincRNA-promoter-TSS (ENSMUSG00000086939.1) -114 ENSMUSG00000086939.1 ENSMUSG00000086939 ENSMUST00000134014 Gm13530 lincRNA Interval_97369 chr2 135535796 135537641 + 0 NA intron (ENSMUSG00000085631.1, intron 1 of 1) antisense-intron (ENSMUSG00000085631.1, intron 1 of 1) 46866 ENSMUSG00000085631.1 ENSMUSG00000085631 ENSMUST00000129868 9630028H03Rik antisense Interval_1866 chr1 34201182 34201714 + 0 NA intron (ENSMUSG00000026131.20, intron 29 of 83) protein_coding-intron (ENSMUSG00000026131.20, intron 44 of 97) -23002 ENSMUSG00000096992.3 ENSMUSG00000096992 ENSMUST00000187268 Gm26788 processed_transcript Interval_154167 chr8 13188252 13189185 + 0 NA TTS (ENSMUSG00000088054.1) miRNA-TTS (ENSMUSG00000088054.1) 380 ENSMUSG00000088054.1 ENSMUSG00000088054 ENSMUST00000157429 Mir1968 miRNA Interval_96139 chr2 119985728 119987036 + 0 NA intron (ENSMUSG00000033902.12, intron 1 of 30) protein_coding-intron (ENSMUSG00000033902.12, intron 1 of 29) 13479 ENSMUSG00000033902.12 ENSMUSG00000033902 ENSMUST00000148161 Mapkbp1 protein_coding Interval_78313 chr18 11913292 11913643 + 0 NA exon (ENSMUSG00000117430.1, exon 1 of 1) TEC-exon (ENSMUSG00000117430.1, exon 1 of 1) 336 ENSMUSG00000117430.1 ENSMUSG00000117430 ENSMUST00000234828 Gm49968 TEC Interval_169769 chr9 101112462 101113335 + 0 NA promoter-TSS (ENSMUSG00000104392.1) TEC-promoter-TSS (ENSMUSG00000104392.1) -907 ENSMUSG00000104392.1 ENSMUSG00000104392 ENSMUST00000195535 Gm37962 TEC Interval_72935 chr17 33643578 33643794 + 0 NA intron (ENSMUSG00000092412.1, intron 4 of 9) protein_coding-intron (ENSMUSG00000032739.16, intron 4 of 9) -1131 ENSMUSG00000032739.16 ENSMUSG00000032739 ENSMUST00000166215 Pram1 protein_coding Interval_111470 chr4 21922399 21923151 + 0 NA Intergenic Intergenic 24063 ENSMUSG00000028247.2 ENSMUSG00000028247 ENSMUST00000142244 Coq3 protein_coding Interval_19269 chr10 95914586 95915613 + 0 NA Intergenic Intergenic 16496 ENSMUSG00000077268.1 ENSMUSG00000077268 ENSMUST00000104080 Gm24433 snoRNA Interval_64448 chr16 11455603 11457808 + 0 NA intron (ENSMUSG00000071669.14, intron 13 of 20) protein_coding-intron (ENSMUSG00000071669.14, intron 6 of 13) 39601 ENSMUSG00000082653.1 ENSMUSG00000082653 ENSMUST00000117770 Gm15897 processed_pseudogene Interval_88091 chr19 58995965 58996219 + 0 NA intron (ENSMUSG00000041362.17, intron 14 of 16) protein_coding-intron (ENSMUSG00000041362.17, intron 14 of 16) 42193 ENSMUSG00000041362.17 ENSMUSG00000041362 ENSMUST00000237215 Shtn1 protein_coding Interval_25828 chr11 51990580 51990781 + 0 NA intron (ENSMUSG00000020390.12, intron 5 of 6) protein_coding-intron (ENSMUSG00000020390.12, intron 4 of 5) 10082 ENSMUSG00000020390.12 ENSMUSG00000020390 ENSMUST00000147833 Ube2b protein_coding Interval_44843 chr13 49024928 49025432 + 0 NA Intergenic Intergenic -57163 ENSMUSG00000038014.7 ENSMUSG00000038014 ENSMUST00000060805 Fam120a protein_coding Interval_5631 chr1 90431282 90432137 + 0 NA Intergenic Intergenic 22792 ENSMUSG00000101997.1 ENSMUSG00000101997 ENSMUST00000187630 Gm28722 lincRNA Interval_110448 chr3 158263234 158263726 + 0 NA intron (ENSMUSG00000028176.13, intron 7 of 24) protein_coding-intron (ENSMUSG00000028176.13, intron 8 of 27) -30934 ENSMUSG00000106448.1 ENSMUSG00000106448 ENSMUST00000196431 Gm43486 TEC Interval_157484 chr8 70665216 70665911 + 0 NA Intergenic Intergenic -5912 ENSMUSG00000056204.8 ENSMUSG00000056204 ENSMUST00000210786 Pgpep1 protein_coding Interval_141282 chr6 126815039 126815922 + 0 NA Intergenic Intergenic -4836 ENSMUSG00000118420.1 ENSMUSG00000118420 ENSMUST00000238440 Gm29788 transcribed_unitary_pseudogene Interval_102468 chr3 27067434 27067759 + 0 NA Intergenic Intergenic -19643 ENSMUSG00000102908.1 ENSMUSG00000102908 ENSMUST00000193221 Gm7558 processed_pseudogene Interval_32557 chr11 108563715 108563929 + 0 NA intron (ENSMUSG00000020728.17, intron 15 of 24) protein_coding-intron (ENSMUSG00000020728.17, intron 18 of 27) -30158 ENSMUSG00000086761.1 ENSMUSG00000086761 ENSMUST00000137907 Cep112os1 antisense Interval_119064 chr4 135298401 135298809 + 0 NA Intergenic Intergenic -7930 ENSMUSG00000087270.2 ENSMUSG00000087270 ENSMUST00000120974 Gm12983 processed_pseudogene Interval_100174 chr2 167462938 167463556 + 0 NA intron (ENSMUSG00000039463.14, intron 4 of 6) protein_coding-intron (ENSMUSG00000039463.14, intron 10 of 16) 12192 ENSMUSG00000039463.14 ENSMUSG00000039463 ENSMUST00000148454 Slc9a8 protein_coding Interval_99958 chr2 166108471 166108744 + 0 NA intron (ENSMUSG00000006800.14, intron 4 of 21) protein_coding-intron (ENSMUSG00000006800.14, intron 3 of 20) 47056 ENSMUSG00000006800.14 ENSMUSG00000006800 ENSMUST00000133395 Sulf2 protein_coding Interval_98424 chr2 152270156 152271611 + 0 NA intron (ENSMUSG00000074698.10, intron 8 of 8) protein_coding-intron (ENSMUSG00000074698.10, intron 8 of 12) -23297 ENSMUSG00000027465.13 ENSMUSG00000027465 ENSMUST00000141373 Tbc1d20 protein_coding Interval_141938 chr6 135671787 135672231 + 0 NA intron (ENSMUSG00000107396.2, intron 2 of 4) lincRNA-intron (ENSMUSG00000107396.2, intron 2 of 4) 13096 ENSMUSG00000107396.2 ENSMUSG00000107396 ENSMUST00000203439 4930425L21Rik lincRNA Interval_110226 chr3 154596349 154597857 + 0 NA promoter-TSS (ENSMUSG00000047583.9) protein_coding-promoter-TSS (ENSMUSG00000047583.9) -5 ENSMUSG00000047583.9 ENSMUSG00000047583 ENSMUST00000122976 Tyw3 protein_coding Interval_127504 chr5 104608499 104610018 + 0 NA Intergenic Intergenic 82800 ENSMUSG00000118625.1 ENSMUSG00000118625 ENSMUST00000239343 AC123687.1 transcribed_unprocessed_pseudogene Interval_108882 chr3 132963362 132963935 + 0 NA Intergenic Intergenic 23778 ENSMUSG00000089431.1 ENSMUSG00000089431 ENSMUST00000158806 Gm23196 snRNA Interval_100549 chr2 170070634 170071164 + 0 NA exon (ENSMUSG00000047907.11, exon 2 of 2) protein_coding-exon (ENSMUSG00000047907.11, exon 2 of 2) 77204 ENSMUSG00000052056.14 ENSMUSG00000052056 ENSMUST00000149318 Zfp217 protein_coding Interval_85296 chr19 24476625 24477995 + 0 NA promoter-TSS (ENSMUSG00000074922.1) protein_coding-promoter-TSS (ENSMUSG00000074922.1) 46 ENSMUSG00000074922.1 ENSMUSG00000074922 ENSMUST00000099556 Fam122a protein_coding Interval_115180 chr4 93520497 93520835 + 0 NA intron (ENSMUSG00000084833.1, intron 2 of 2) lincRNA-intron (ENSMUSG00000084833.1, intron 2 of 2) 24611 ENSMUSG00000064850.1 ENSMUSG00000064850 ENSMUST00000082916 Gm23443 snoRNA Interval_99333 chr2 159119062 159120504 + 0 NA Intergenic Intergenic -19578 ENSMUSG00000077188.1 ENSMUSG00000077188 ENSMUST00000104000 Gm25090 snoRNA Interval_39466 chr12 88055755 88056117 + 0 NA Intergenic Intergenic -2145 ENSMUSG00000113838.1 ENSMUSG00000113838 ENSMUST00000221523 Gm46994 processed_pseudogene Interval_83242 chr18 82953872 82954719 + 0 NA intron (ENSMUSG00000058881.13, intron 1 of 1) protein_coding-intron (ENSMUSG00000058881.13, intron 1 of 5) -33735 ENSMUSG00000118339.1 ENSMUSG00000118339 ENSMUST00000237056 4930592I03Rik processed_transcript Interval_125358 chr5 66414242 66414455 + 0 NA intron (ENSMUSG00000029207.16, intron 5 of 5) protein_coding-intron (ENSMUSG00000029207.16, intron 5 of 17) 17778 ENSMUSG00000106732.1 ENSMUSG00000106732 ENSMUST00000202492 Gm43792 TEC Interval_173565 chrX 99463929 99464245 + 0 NA Intergenic Intergenic 5062 ENSMUSG00000085553.1 ENSMUSG00000085553 ENSMUST00000129259 Gm14808 antisense Interval_149846 chr7 101962162 101962812 + 0 NA intron (ENSMUSG00000066306.13, intron 1 of 13) protein_coding-intron (ENSMUSG00000066306.13, intron 1 of 13) -5202 ENSMUSG00000109872.1 ENSMUSG00000109872 ENSMUST00000210566 Gm45312 processed_pseudogene Interval_117373 chr4 123306834 123307506 + 0 NA promoter-TSS (ENSMUSG00000118657.1) unprocessed_pseudogene-promoter-TSS (ENSMUSG00000118657.1) 47 ENSMUSG00000118657.1 ENSMUSG00000118657 ENSMUST00000239455 AL606917.1 unprocessed_pseudogene Interval_15045 chr10 42193056 42193301 + 0 NA intron (ENSMUSG00000048756.11, intron 3 of 3) protein_coding-intron (ENSMUSG00000048756.11, intron 3 of 3) 65188 ENSMUSG00000048756.11 ENSMUSG00000048756 ENSMUST00000105501 Foxo3 protein_coding Interval_92127 chr2 53522471 53522907 + 0 NA Intergenic Intergenic -29237 ENSMUSG00000080716.1 ENSMUSG00000080716 ENSMUST00000119017 Gm13503 processed_pseudogene Interval_49457 chr13 112212084 112213965 + 0 NA Intergenic Intergenic -6169 ENSMUSG00000104438.1 ENSMUSG00000104438 ENSMUST00000192356 Gm37427 TEC Interval_71516 chr17 24250877 24252164 + 0 NA promoter-TSS (ENSMUSG00000072082.7) protein_coding-promoter-TSS (ENSMUSG00000072082.7) -173 ENSMUSG00000072082.7 ENSMUSG00000072082 ENSMUST00000234096 Ccnf protein_coding Interval_11640 chr1 183699086 183699361 + 0 NA Intergenic Intergenic -17092 ENSMUSG00000090533.2 ENSMUSG00000090533 ENSMUST00000172123 Gm8214 processed_pseudogene Interval_37277 chr12 64483214 64483542 + 0 NA Intergenic Intergenic -8688 ENSMUSG00000043060.8 ENSMUSG00000043060 ENSMUST00000059833 Fscb protein_coding Interval_83525 chr18 88840773 88841349 + 0 NA intron (ENSMUSG00000056153.15, intron 2 of 7) protein_coding-intron (ENSMUSG00000056153.15, intron 2 of 7) -8584 ENSMUSG00000117948.1 ENSMUSG00000117948 ENSMUST00000237769 Gm6409 processed_pseudogene Interval_134642 chr6 30111760 30113112 + 0 NA intron (ENSMUSG00000058440.14, intron 4 of 8) protein_coding-intron (ENSMUSG00000058440.14, intron 4 of 9) 22541 ENSMUSG00000058440.14 ENSMUSG00000058440 ENSMUST00000132866 Nrf1 protein_coding Interval_3950 chr1 65037250 65038881 + 0 NA Intergenic Intergenic -5318 ENSMUSG00000025955.13 ENSMUSG00000025955 ENSMUST00000160283 Akr1cl protein_coding Interval_161039 chr8 117094775 117095297 + 0 NA promoter-TSS (ENSMUSG00000031845.15) protein_coding-promoter-TSS (ENSMUSG00000031845.15) -962 ENSMUSG00000031845.15 ENSMUSG00000031845 ENSMUST00000176860 Bco1 protein_coding Interval_110041 chr3 152721294 152721867 + 0 NA intron (ENSMUSG00000039047.17, intron 2 of 7) protein_coding-intron (ENSMUSG00000039047.17, intron 2 of 11) 7457 ENSMUSG00000039047.17 ENSMUSG00000039047 ENSMUST00000160651 Pigk protein_coding Interval_95908 chr2 118263222 118263961 + 0 NA intron (ENSMUSG00000100046.1, intron 1 of 1) processed_transcript-intron (ENSMUSG00000100046.1, intron 1 of 1) -6635 ENSMUSG00000027344.14 ENSMUSG00000027344 ENSMUST00000028820 Fsip1 protein_coding Interval_64101 chr16 8352851 8353990 + 0 NA Intergenic Intergenic 16427 ENSMUSG00000089593.1 ENSMUSG00000089593 ENSMUST00000158968 Gm26159 snRNA Interval_18387 chr10 85473354 85473840 + 0 NA intron (ENSMUSG00000020042.15, intron 1 of 16) protein_coding-intron (ENSMUSG00000020042.15, intron 1 of 9) 139696 ENSMUSG00000087895.1 ENSMUSG00000087895 ENSMUST00000157270 Gm25281 miRNA Interval_173030 chrX 65901951 65902187 + 0 NA Intergenic Intergenic -34280 ENSMUSG00000083243.1 ENSMUSG00000083243 ENSMUST00000118588 Gm14668 processed_pseudogene Interval_46821 chr13 71529487 71530386 + 0 NA intron (ENSMUSG00000113358.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000113358.1, intron 1 of 1) 42329 ENSMUSG00000113358.1 ENSMUSG00000113358 ENSMUST00000221719 1700112M02Rik lincRNA Interval_84302 chr19 9938758 9940909 + 0 NA exon (ENSMUSG00000118183.1, exon 1 of 1) TEC-exon (ENSMUSG00000118183.1, exon 1 of 1) 567 ENSMUSG00000118183.1 ENSMUSG00000118183 ENSMUST00000237803 Gm50345 TEC Interval_155680 chr8 36102697 36104761 + 0 NA TTS (ENSMUSG00000050271.12) protein_coding-TTS (ENSMUSG00000050271.12) 8868 ENSMUSG00000050271.12 ENSMUSG00000050271 ENSMUST00000150295 Prag1 protein_coding Interval_137375 chr6 71781844 71784003 + 0 NA intron (ENSMUSG00000052852.8, intron 5 of 8) protein_coding-intron (ENSMUSG00000052852.8, intron 5 of 6) -7745 ENSMUSG00000108802.1 ENSMUSG00000108802 ENSMUST00000206120 Gm44769 TEC Interval_75968 chr17 73949371 73949821 + 0 NA intron (ENSMUSG00000024066.9, intron 1 of 32) protein_coding-intron (ENSMUSG00000024066.9, intron 1 of 35) -15683 ENSMUSG00000117182.1 ENSMUSG00000117182 ENSMUST00000233795 Gm18068 processed_pseudogene Interval_34764 chr12 10536890 10537532 + 0 NA Intergenic Intergenic 43711 ENSMUSG00000112127.1 ENSMUSG00000112127 ENSMUST00000219091 Gm48886 processed_pseudogene Interval_126024 chr5 76928778 76929677 + 0 NA intron (ENSMUSG00000072852.4, intron 1 of 1) protein_coding-intron (ENSMUSG00000029246.14, intron 1 of 9) 619 ENSMUSG00000072852.4 ENSMUSG00000072852 ENSMUST00000145897 2310040G07Rik transcribed_unprocessed_pseudogene Interval_97875 chr2 144676413 144677582 + 0 NA intron (ENSMUSG00000027430.12, intron 3 of 4) protein_coding-intron (ENSMUSG00000027430.12, intron 4 of 5) -58764 ENSMUSG00000092833.1 ENSMUSG00000092833 ENSMUST00000175092 Gm24823 miRNA Interval_10629 chr1 172324682 172325045 + 0 NA TTS (ENSMUSG00000038026.12) protein_coding-TTS (ENSMUSG00000038026.12) 1869 ENSMUSG00000102413.1 ENSMUSG00000102413 ENSMUST00000192957 Gm36937 antisense Interval_944 chr1 13335872 13337140 + 0 NA intron (ENSMUSG00000005886.14, intron 1 of 12) protein_coding-intron (ENSMUSG00000005886.14, intron 1 of 22) -1897 ENSMUSG00000087782.1 ENSMUSG00000087782 ENSMUST00000157157 Gm23169 snRNA Interval_85035 chr19 21703678 21704786 + 0 NA Intergenic Intergenic 23598 ENSMUSG00000047368.4 ENSMUSG00000047368 ENSMUST00000236549 Abhd17b protein_coding Interval_14631 chr10 37240110 37240676 + 0 NA Intergenic Intergenic 23355 ENSMUSG00000110799.1 ENSMUSG00000110799 ENSMUST00000217044 4930543K20Rik lincRNA Interval_47754 chr13 92347768 92348093 + 0 NA exon (ENSMUSG00000014850.15, exon 5 of 7) protein_coding-exon (ENSMUSG00000014850.15, exon 5 of 7) -6796 ENSMUSG00000021707.5 ENSMUSG00000021707 ENSMUST00000022218 Dhfr protein_coding Interval_21420 chr10 128498568 128499642 + 0 NA promoter-TSS (ENSMUSG00000039824.4) protein_coding-promoter-TSS (ENSMUSG00000039824.4) -3549 ENSMUSG00000039824.4 ENSMUSG00000039824 ENSMUST00000218250 Myl6b protein_coding Interval_111249 chr4 15980715 15981011 + 0 NA intron (ENSMUSG00000028224.14, intron 10 of 10) protein_coding-intron (ENSMUSG00000028224.14, intron 10 of 15) -10935 ENSMUSG00000084190.1 ENSMUSG00000084190 ENSMUST00000118701 Gm11869 processed_pseudogene Interval_43945 chr13 38229068 38229969 + 0 NA Intergenic Intergenic 13582 ENSMUSG00000021431.15 ENSMUSG00000021431 ENSMUST00000223893 Snrnp48 protein_coding Interval_149801 chr7 101653554 101654184 + 0 NA Intergenic Intergenic -9904 ENSMUSG00000001829.17 ENSMUSG00000001829 ENSMUST00000150832 Clpb protein_coding Interval_113408 chr4 54652817 54653339 + 0 NA intron (ENSMUSG00000087077.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000086371.1, intron 1 of 1) 1175 ENSMUSG00000087077.1 ENSMUSG00000087077 ENSMUST00000129576 Gm12480 lincRNA Interval_116475 chr4 114257921 114258173 + 0 NA Intergenic Intergenic -92171 ENSMUSG00000082825.1 ENSMUSG00000082825 ENSMUST00000119401 Gm15741 processed_pseudogene Interval_23825 chr11 26668824 26670145 + 0 NA Intergenic Intergenic -43421 ENSMUSG00000082038.1 ENSMUSG00000082038 ENSMUST00000121968 Gm12071 processed_pseudogene Interval_121153 chr4 153573132 153573542 + 0 NA Intergenic Intergenic -91158 ENSMUSG00000039546.9 ENSMUSG00000039546 ENSMUST00000149177 Ajap1 protein_coding Interval_172666 chrX 41910417 41912530 + 0 NA intron (ENSMUSG00000037475.15, intron 2 of 5) protein_coding-intron (ENSMUSG00000037475.15, intron 1 of 38) -4943 ENSMUSG00000081398.1 ENSMUSG00000081398 ENSMUST00000118851 Gm7657 processed_pseudogene Interval_53149 chr14 54722760 54723255 + 0 NA exon (ENSMUSG00000022180.7, exon 11 of 11) protein_coding-exon (ENSMUSG00000022180.7, exon 11 of 11) -10833 ENSMUSG00000052435.7 ENSMUSG00000052435 ENSMUST00000064290 Cebpe protein_coding Interval_23500 chr11 22981678 22982618 + 0 NA promoter-TSS (ENSMUSG00000051355.18) protein_coding-promoter-TSS (ENSMUSG00000051355.18) -58 ENSMUSG00000098650.1 ENSMUSG00000098650 ENSMUST00000160826 Commd1b protein_coding Interval_148350 chr7 80680139 80680470 + 0 NA intron (ENSMUSG00000030527.15, intron 1 of 1) protein_coding-intron (ENSMUSG00000030527.15, intron 1 of 14) 44287 ENSMUSG00000084821.1 ENSMUSG00000084821 ENSMUST00000142678 Gm15880 antisense Interval_133004 chr5 149223394 149223725 + 0 NA Intergenic Intergenic -13595 ENSMUSG00000100783.1 ENSMUSG00000100783 ENSMUST00000189639 2310047D07Rik lincRNA Interval_143261 chr7 4825281 4826529 + 0 NA exon (ENSMUSG00000053550.13, exon 6 of 6) protein_coding-exon (ENSMUSG00000053550.13, exon 6 of 6) 5222 ENSMUSG00000053550.13 ENSMUSG00000053550 ENSMUST00000132806 Shisa7 protein_coding Interval_63197 chr15 99682895 99684852 + 0 NA intron (ENSMUSG00000023017.10, intron 1 of 2) protein_coding-intron (ENSMUSG00000023017.10, intron 3 of 11) -11171 ENSMUSG00000023017.10 ENSMUSG00000023017 ENSMUST00000227670 Asic1 protein_coding Interval_135645 chr6 42284020 42284396 + 0 NA Intergenic Intergenic -2477 ENSMUSG00000029862.16 ENSMUSG00000029862 ENSMUST00000169902 Clcn1 protein_coding Interval_103764 chr3 52448749 52449001 + 0 NA Intergenic Intergenic 23467 ENSMUSG00000103454.1 ENSMUSG00000103454 ENSMUST00000194115 Gm38098 processed_pseudogene Interval_173667 chrX 101668298 101668641 + 0 NA intron (ENSMUSG00000034160.13, intron 7 of 16) protein_coding-intron (ENSMUSG00000034160.13, intron 12 of 21) 23381 ENSMUSG00000082729.3 ENSMUSG00000082729 ENSMUST00000121259 Gm14845 processed_pseudogene Interval_107850 chr3 116237255 116237995 + 0 NA Intergenic Intergenic 15838 ENSMUSG00000068696.6 ENSMUSG00000068696 ENSMUST00000199128 Gpr88 protein_coding Interval_72911 chr17 33353089 33353594 + 0 NA intron (ENSMUSG00000003929.11, intron 1 of 4) protein_coding-intron (ENSMUSG00000003929.11, intron 1 of 3) 5527 ENSMUSG00000003929.11 ENSMUSG00000003929 ENSMUST00000235063 Zfp81 protein_coding Interval_149040 chr7 92615475 92615860 + 0 NA intron (ENSMUSG00000041343.19, intron 4 of 6) protein_coding-intron (ENSMUSG00000041343.19, intron 5 of 12) 20593 ENSMUSG00000041343.19 ENSMUSG00000041343 ENSMUST00000207151 Ankrd42 protein_coding Interval_20274 chr10 116580643 116582415 + 0 NA promoter-TSS (ENSMUSG00000020166.15) protein_coding-promoter-TSS (ENSMUSG00000020166.15) 14747 ENSMUSG00000112881.1 ENSMUSG00000112881 ENSMUST00000220056 Gm49344 TEC Interval_72956 chr17 33802208 33802374 + 0 NA Intergenic Intergenic -16567 ENSMUSG00000092602.1 ENSMUSG00000092602 ENSMUST00000173637 4931413I07Rik lincRNA Interval_142822 chr6 146215529 146216124 + 0 NA intron (ENSMUSG00000030287.15, intron 1 of 4) protein_coding-intron (ENSMUSG00000030287.15, intron 45 of 56) 16653 ENSMUSG00000030287.15 ENSMUSG00000030287 ENSMUST00000111673 Itpr2 protein_coding Interval_94781 chr2 94262726 94263692 + 0 NA intron (ENSMUSG00000075020.6, intron 1 of 1) lincRNA-intron (ENSMUSG00000075020.6, intron 1 of 1) 1399 ENSMUSG00000075020.6 ENSMUSG00000075020 ENSMUST00000134563 Mir670hg lincRNA Interval_69447 chr16 93499734 93500169 + 0 NA Intergenic Intergenic -12877 ENSMUSG00000116595.1 ENSMUSG00000116595 ENSMUST00000231757 Gm30695 lincRNA Interval_86042 chr19 35832933 35833445 + 0 NA Intergenic Intergenic -67062 ENSMUSG00000118212.1 ENSMUSG00000118212 ENSMUST00000235233 Gm41836 lincRNA Interval_137179 chr6 69298583 69300332 + 0 NA Intergenic Intergenic 5948 ENSMUSG00000076549.2 ENSMUSG00000076549 ENSMUST00000103350 Igkv4-68 IG_V_gene Interval_128782 chr5 115230957 115231712 + 0 NA Intergenic Intergenic -6645 ENSMUSG00000060152.14 ENSMUSG00000060152 ENSMUST00000140083 Pop5 protein_coding Interval_109486 chr3 142862153 142862456 + 0 NA intron (ENSMUSG00000004591.16, intron 1 of 21) protein_coding-intron (ENSMUSG00000004591.16, intron 1 of 21) -19284 ENSMUSG00000106550.1 ENSMUSG00000106550 ENSMUST00000199962 Gm43646 processed_transcript Interval_85756 chr19 30471889 30472840 + 0 NA Intergenic Intergenic 18921 ENSMUSG00000118374.1 ENSMUSG00000118374 ENSMUST00000236809 Gm17885 processed_pseudogene Interval_54230 chr14 66635254 66637332 + 0 NA intron (ENSMUSG00000045875.13, intron 1 of 3) protein_coding-intron (ENSMUSG00000045875.13, intron 1 of 3) 962 ENSMUSG00000045875.13 ENSMUSG00000045875 ENSMUST00000161339 Adra1a protein_coding Interval_102370 chr3 22306821 22307641 + 0 NA Intergenic Intergenic -9401 ENSMUSG00000102987.1 ENSMUSG00000102987 ENSMUST00000194390 Gm38324 lincRNA Interval_148343 chr7 80620959 80621863 + 0 NA intron (ENSMUSG00000030527.15, intron 1 of 2) protein_coding-intron (ENSMUSG00000030527.15, intron 3 of 14) 8296 ENSMUSG00000030527.15 ENSMUSG00000030527 ENSMUST00000152668 Crtc3 protein_coding Interval_57592 chr15 12655596 12656938 + 0 NA intron (ENSMUSG00000022197.16, intron 2 of 4) protein_coding-intron (ENSMUSG00000022197.16, intron 2 of 4) -20921 ENSMUSG00000103130.1 ENSMUSG00000103130 ENSMUST00000191701 F830212C03Rik TEC Interval_153080 chr7 141231656 141232140 + 0 NA intron (ENSMUSG00000038611.17, intron 2 of 16) protein_coding-intron (ENSMUSG00000038611.17, intron 2 of 17) -3525 ENSMUSG00000038611.17 ENSMUSG00000038611 ENSMUST00000144250 Phrf1 protein_coding Interval_98440 chr2 152368733 152370135 + 0 NA exon (ENSMUSG00000059361.6, exon 3 of 3) protein_coding-exon (ENSMUSG00000059361.6, exon 3 of 3) 7204 ENSMUSG00000059361.6 ENSMUSG00000059361 ENSMUST00000079278 Nrsn2 protein_coding Interval_150892 chr7 116206697 116207283 + 0 NA intron (ENSMUSG00000045659.18, intron 3 of 18) protein_coding-intron (ENSMUSG00000045659.18, intron 3 of 26) 75753 ENSMUSG00000108650.1 ENSMUSG00000108650 ENSMUST00000205675 Gm44867 sense_intronic Interval_107919 chr3 116781661 116781894 + 0 NA promoter-TSS (ENSMUSG00000033400.14) protein_coding-promoter-TSS (ENSMUSG00000033400.14) 25640 ENSMUSG00000033400.14 ENSMUSG00000033400 ENSMUST00000159670 Agl protein_coding Interval_157411 chr8 70194674 70194865 + 0 NA intron (ENSMUSG00000002346.16, intron 1 of 5) protein_coding-intron (ENSMUSG00000002346.16, intron 1 of 8) 17536 ENSMUSG00000002346.16 ENSMUSG00000002346 ENSMUST00000134596 Slc25a42 protein_coding Interval_90156 chr2 28612335 28612952 + 0 NA intron (ENSMUSG00000026815.14, intron 5 of 6) protein_coding-intron (ENSMUSG00000026815.14, intron 5 of 6) 4448 ENSMUSG00000078061.1 ENSMUSG00000078061 ENSMUST00000104867 Gm22824 miRNA Interval_121040 chr4 152378941 152379967 + 0 NA exon (ENSMUSG00000005045.16, exon 30 of 41) protein_coding-exon (ENSMUSG00000005045.16, exon 30 of 41) -25813 ENSMUSG00000085179.1 ENSMUSG00000085179 ENSMUST00000145163 Gm13645 processed_transcript Interval_18534 chr10 87046484 87047351 + 0 NA Intergenic Intergenic 46620 ENSMUSG00000089666.1 ENSMUSG00000089666 ENSMUST00000160532 Gm16269 processed_pseudogene Interval_34001 chr11 119927373 119929062 + 0 NA Intergenic Intergenic -10294 ENSMUSG00000086924.1 ENSMUSG00000086924 ENSMUST00000143428 Gm11766 lincRNA Interval_129108 chr5 117447347 117447978 + 0 NA intron (ENSMUSG00000061578.8, intron 1 of 20) protein_coding-intron (ENSMUSG00000061578.8, intron 1 of 3) 33662 ENSMUSG00000061578.8 ENSMUSG00000061578 ENSMUST00000180430 Ksr2 protein_coding Interval_5150 chr1 86059091 86059868 + 0 NA Intergenic Intergenic -5162 ENSMUSG00000026229.17 ENSMUSG00000026229 ENSMUST00000149946 Psmd1 protein_coding Interval_43915 chr13 38012108 38012396 + 0 NA intron (ENSMUSG00000044566.15, intron 10 of 12) protein_coding-intron (ENSMUSG00000044566.15, intron 10 of 12) -18169 ENSMUSG00000021427.10 ENSMUSG00000021427 ENSMUST00000224399 Ssr1 protein_coding Interval_66685 chr16 36101414 36102786 + 0 NA Intergenic Intergenic 12896 ENSMUSG00000075229.11 ENSMUSG00000075229 ENSMUST00000231239 Ccdc58 protein_coding Interval_85260 chr19 24215993 24216215 + 0 NA intron (ENSMUSG00000024812.11, intron 1 of 23) protein_coding-intron (ENSMUSG00000024812.11, intron 1 of 22) 62034 ENSMUSG00000118371.1 ENSMUSG00000118371 ENSMUST00000237530 Gm50308 processed_pseudogene Interval_3516 chr1 59236712 59238165 + 0 NA promoter-TSS (ENSMUSG00000026024.14) protein_coding-promoter-TSS (ENSMUSG00000026024.14) -18312 ENSMUSG00000026024.14 ENSMUSG00000026024 ENSMUST00000188469 Als2 protein_coding Interval_72602 chr17 30969632 30969858 + 0 NA exon (ENSMUSG00000118169.1, exon 1 of 2) antisense-exon (ENSMUSG00000118169.1, exon 1 of 2) 260 ENSMUSG00000118169.1 ENSMUSG00000118169 ENSMUST00000236274 Gm50249 antisense Interval_156090 chr8 44083842 44084135 + 0 NA Intergenic Intergenic -35619 ENSMUSG00000109856.1 ENSMUSG00000109856 ENSMUST00000210145 Gm19855 processed_pseudogene Interval_116512 chr4 114924735 114926450 + 0 NA exon (ENSMUSG00000044518.3, exon 1 of 1) protein_coding-exon (ENSMUSG00000044518.3, exon 1 of 1) 421 ENSMUSG00000044518.3 ENSMUSG00000044518 ENSMUST00000050940 Foxe3 protein_coding Interval_83120 chr18 81620061 81621220 + 0 NA Intergenic Intergenic 17107 ENSMUSG00000117870.1 ENSMUSG00000117870 ENSMUST00000236490 Gm41792 lincRNA Interval_5775 chr1 91730794 91731029 + 0 NA Intergenic Intergenic -70559 ENSMUSG00000007805.4 ENSMUSG00000007805 ENSMUST00000186075 Twist2 protein_coding Interval_125023 chr5 63936474 63937054 + 0 NA intron (ENSMUSG00000047881.14, intron 2 of 6) protein_coding-intron (ENSMUSG00000047881.14, intron 3 of 7) -5850 ENSMUSG00000047881.14 ENSMUSG00000047881 ENSMUST00000127314 Rell1 protein_coding Interval_73814 chr17 44031011 44031525 + 0 NA intron (ENSMUSG00000039601.16, intron 1 of 1) protein_coding-intron (ENSMUSG00000039601.16, intron 3 of 3) 4558 ENSMUSG00000039601.16 ENSMUSG00000039601 ENSMUST00000229939 Rcan2 protein_coding Interval_105062 chr3 80802323 80803438 + 0 NA promoter-TSS (ENSMUSG00000033981.14) protein_coding-promoter-TSS (ENSMUSG00000033981.14) -100 ENSMUSG00000033981.14 ENSMUSG00000033981 ENSMUST00000194164 Gria2 protein_coding Interval_173271 chrX 75778743 75778962 + 0 NA Intergenic Intergenic 55180 ENSMUSG00000081996.1 ENSMUSG00000081996 ENSMUST00000117092 Gm7153 processed_pseudogene Interval_14228 chr10 29196449 29197544 + 0 NA TTS (ENSMUSG00000038916.7) protein_coding-TTS (ENSMUSG00000038916.7) -1958 ENSMUSG00000110723.1 ENSMUSG00000110723 ENSMUST00000217011 Gm49353 protein_coding Interval_35888 chr12 31628376 31628958 + 0 NA intron (ENSMUSG00000020650.15, intron 3 of 7) protein_coding-intron (ENSMUSG00000020650.15, intron 2 of 6) 26109 ENSMUSG00000020648.3 ENSMUSG00000020648 ENSMUST00000219855 Dus4l protein_coding Interval_33496 chr11 116885185 116886341 + 0 NA Intergenic Intergenic 31685 ENSMUSG00000020818.16 ENSMUSG00000020818 ENSMUST00000134106 Mfsd11 protein_coding Interval_23087 chr11 19860934 19861647 + 0 NA Intergenic Intergenic 77638 ENSMUSG00000081820.1 ENSMUSG00000081820 ENSMUST00000120073 Gm12029 processed_pseudogene Interval_107968 chr3 117868258 117869308 + 0 NA promoter-TSS (ENSMUSG00000028007.13) protein_coding-promoter-TSS (ENSMUSG00000028007.13) -20131 ENSMUSG00000093054.1 ENSMUSG00000093054 ENSMUST00000175313 Gm24811 miRNA Interval_28512 chr11 76416701 76417327 + 0 NA TTS (ENSMUSG00000020843.15) protein_coding-TTS (ENSMUSG00000020843.15) 9809 ENSMUSG00000020843.15 ENSMUSG00000020843 ENSMUST00000164102 Timm22 protein_coding Interval_32670 chr11 109545449 109546281 + 0 NA intron (ENSMUSG00000020604.13, intron 1 of 4) protein_coding-intron (ENSMUSG00000020604.13, intron 10 of 13) -46041 ENSMUSG00000088106.1 ENSMUSG00000088106 ENSMUST00000157481 Gm22378 snRNA Interval_148452 chr7 81339503 81340205 + 0 NA Intergenic Intergenic 5373 ENSMUSG00000061787.15 ENSMUSG00000061787 ENSMUST00000138936 Rps17 protein_coding Interval_172452 chrX 20637175 20637445 + 0 NA intron (ENSMUSG00000031060.16, intron 3 of 16) protein_coding-intron (ENSMUSG00000031060.16, intron 2 of 22) 17212 ENSMUSG00000031060.16 ENSMUSG00000031060 ENSMUST00000064911 Rbm10 protein_coding Interval_140271 chr6 115962249 115963816 + 0 NA intron (ENSMUSG00000030123.15, intron 23 of 35) protein_coding-intron (ENSMUSG00000030123.15, intron 23 of 35) -6194 ENSMUSG00000030123.15 ENSMUSG00000030123 ENSMUST00000131590 Plxnd1 protein_coding Interval_29865 chr11 87413245 87413747 + 0 NA intron (ENSMUSG00000010342.16, intron 1 of 30) protein_coding-intron (ENSMUSG00000010342.16, intron 1 of 30) -8990 ENSMUSG00000007646.13 ENSMUSG00000007646 ENSMUST00000129400 Rad51c protein_coding Interval_58515 chr15 35362743 35363510 + 0 NA Intergenic Intergenic 10021 ENSMUSG00000115829.1 ENSMUSG00000115829 ENSMUST00000228236 Gm48960 antisense Interval_4614 chr1 75452791 75453060 + 0 NA intron (ENSMUSG00000033007.15, intron 1 of 8) protein_coding-intron (ENSMUSG00000033007.15, intron 1 of 9) 2489 ENSMUSG00000033007.15 ENSMUSG00000033007 ENSMUST00000037708 Asic4 protein_coding Interval_28632 chr11 77462075 77462956 + 0 NA promoter-TSS (ENSMUSG00000020836.15) protein_coding-promoter-TSS (ENSMUSG00000020836.15) -130 ENSMUSG00000020836.15 ENSMUSG00000020836 ENSMUST00000079770 Coro6 protein_coding Interval_7197 chr1 127740012 127740440 + 0 NA intron (ENSMUSG00000026348.7, intron 3 of 9) protein_coding-intron (ENSMUSG00000026348.7, intron 3 of 9) -16531 ENSMUSG00000026348.7 ENSMUSG00000026348 ENSMUST00000186537 Acmsd protein_coding Interval_7254 chr1 128252541 128253463 + 0 NA intron (ENSMUSG00000026353.9, intron 2 of 4) protein_coding-intron (ENSMUSG00000026353.9, intron 2 of 12) 9038 ENSMUSG00000026353.9 ENSMUSG00000026353 ENSMUST00000189895 Ubxn4 protein_coding Interval_120399 chr4 148370965 148371677 + 0 NA Intergenic Intergenic -11861 ENSMUSG00000086326.1 ENSMUSG00000086326 ENSMUST00000138802 Gm13200 lincRNA Interval_29209 chr11 81571743 81571950 + 0 NA TTS (ENSMUSG00000080980.1) processed_pseudogene-TTS (ENSMUSG00000080980.1) 1627 ENSMUSG00000080980.1 ENSMUSG00000080980 ENSMUST00000117522 1700071K01Rik processed_pseudogene Interval_110314 chr3 156643841 156644216 + 0 NA intron (ENSMUSG00000040037.13, intron 1 of 6) protein_coding-intron (ENSMUSG00000040037.13, intron 1 of 6) -2292 ENSMUSG00000104696.1 ENSMUSG00000104696 ENSMUST00000196108 Gm42946 TEC Interval_10686 chr1 172809859 172810034 + 0 NA intron (ENSMUSG00000037942.5, intron 1 of 1) protein_coding-intron (ENSMUSG00000037942.5, intron 1 of 1) 28501 ENSMUSG00000102430.1 ENSMUSG00000102430 ENSMUST00000193740 Gm38051 processed_pseudogene Interval_63428 chr15 101011152 101011590 + 0 NA TTS (ENSMUSG00000023033.14) protein_coding-TTS (ENSMUSG00000023033.14) 36026 ENSMUSG00000113558.1 ENSMUSG00000113558 ENSMUST00000222611 Tmdd1 protein_coding Interval_73687 chr17 42817226 42817408 + 0 NA intron (ENSMUSG00000061665.7, intron 9 of 15) protein_coding-intron (ENSMUSG00000061665.7, intron 11 of 17) 13713 ENSMUSG00000061665.7 ENSMUSG00000061665 ENSMUST00000233626 Cd2ap protein_coding Interval_28803 chr11 78420972 78422736 + 0 NA intron (ENSMUSG00000001095.5, intron 1 of 11) protein_coding-intron (ENSMUSG00000001095.5, intron 1 of 11) 363 ENSMUSG00000001095.5 ENSMUSG00000001095 ENSMUST00000001122 Slc13a2 protein_coding Interval_35827 chr12 30722410 30722994 + 0 NA Intergenic Intergenic 135788 ENSMUSG00000043061.10 ENSMUSG00000043061 ENSMUST00000218826 Tmem18 protein_coding Interval_147306 chr7 65717393 65717807 + 0 NA Intergenic Intergenic 24124 ENSMUSG00000078681.10 ENSMUSG00000078681 ENSMUST00000206361 Tm2d3 protein_coding Interval_102815 chr3 31398626 31399452 + 0 NA Intergenic Intergenic 58027 ENSMUSG00000103998.1 ENSMUSG00000103998 ENSMUST00000193926 Gm38025 lincRNA Interval_99864 chr2 165379804 165381428 + 0 NA exon (ENSMUSG00000017667.9, exon 5 of 5) protein_coding-exon (ENSMUSG00000017667.9, exon 5 of 5) 7643 ENSMUSG00000017667.9 ENSMUSG00000017667 ENSMUST00000103084 Zfp334 protein_coding Interval_63406 chr15 100870162 100871792 + 0 NA promoter-TSS (ENSMUSG00000023033.14) protein_coding-promoter-TSS (ENSMUSG00000023033.14) -38586 ENSMUSG00000115912.1 ENSMUSG00000115912 ENSMUST00000230694 Gm35569 lincRNA Interval_166598 chr9 61216234 61216754 + 0 NA Intergenic Intergenic 9815 ENSMUSG00000111449.1 ENSMUSG00000111449 ENSMUST00000214812 Gm34105 lincRNA Interval_77587 chr17 92522764 92523467 + 0 NA Intergenic Intergenic 5395 ENSMUSG00000098122.1 ENSMUSG00000098122 ENSMUST00000182438 Gm27039 processed_pseudogene Interval_132065 chr5 142575788 142576113 + 0 NA intron (ENSMUSG00000039533.8, intron 2 of 6) protein_coding-intron (ENSMUSG00000039533.8, intron 2 of 6) 19506 ENSMUSG00000105213.1 ENSMUSG00000105213 ENSMUST00000196808 Gm43037 unprocessed_pseudogene Interval_128756 chr5 115107483 115108374 + 0 NA promoter-TSS (ENSMUSG00000072692.7) transcribed_processed_pseudogene-promoter-TSS (ENSMUSG00000072692.7) 34 ENSMUSG00000072692.7 ENSMUSG00000072692 ENSMUST00000124641 Rpl37rt transcribed_processed_pseudogene Interval_160094 chr8 106364253 106364583 + 0 NA Intergenic Intergenic -50909 ENSMUSG00000031907.9 ENSMUSG00000031907 ENSMUST00000212874 Zfp90 protein_coding Interval_44269 chr13 43225089 43226130 + 0 NA intron (ENSMUSG00000051335.6, intron 1 of 1) protein_coding-intron (ENSMUSG00000051335.6, intron 1 of 1) -66057 ENSMUSG00000021368.15 ENSMUSG00000021368 ENSMUST00000221095 Tbc1d7 protein_coding Interval_108346 chr3 124602579 124603201 + 0 NA Intergenic Intergenic -13733 ENSMUSG00000106009.1 ENSMUSG00000106009 ENSMUST00000196790 Gm9379 processed_pseudogene Interval_146973 chr7 56518296 56520175 + 0 NA intron (ENSMUSG00000030450.11, intron 22 of 22) protein_coding-intron (ENSMUSG00000030450.11, intron 23 of 23) -229039 ENSMUSG00000108488.1 ENSMUSG00000108488 ENSMUST00000206218 Gm44979 processed_pseudogene Interval_47137 chr13 76195182 76195802 + 0 NA Intergenic Intergenic -3499 ENSMUSG00000114664.1 ENSMUSG00000114664 ENSMUST00000225364 Gm48639 TEC Interval_38849 chr12 83381622 83381958 + 0 NA intron (ENSMUSG00000021221.15, intron 1 of 10) protein_coding-intron (ENSMUSG00000021221.15, intron 1 of 8) 105926 ENSMUSG00000021221.15 ENSMUSG00000021221 ENSMUST00000177801 Dpf3 protein_coding Interval_127706 chr5 106847028 106847625 + 0 NA intron (ENSMUSG00000043410.16, intron 16 of 18) protein_coding-intron (ENSMUSG00000043410.16, intron 36 of 39) 32372 ENSMUSG00000098703.1 ENSMUSG00000098703 ENSMUST00000183903 Gm27527 miRNA Interval_22220 chr11 7234629 7235603 + 0 NA Intergenic Intergenic -21193 ENSMUSG00000020427.11 ENSMUSG00000020427 ENSMUST00000135887 Igfbp3 protein_coding Interval_66049 chr16 31235148 31235793 + 0 NA promoter-TSS (ENSMUSG00000116946.1) lincRNA-promoter-TSS (ENSMUSG00000116946.1) 1880 ENSMUSG00000116946.1 ENSMUSG00000116946 ENSMUST00000232234 Gm41442 lincRNA Interval_31237 chr11 99060509 99060786 + 0 NA Intergenic Intergenic 14694 ENSMUSG00000017607.9 ENSMUSG00000017607 ENSMUST00000123303 Tns4 protein_coding Interval_129248 chr5 118428038 118429013 + 0 NA Intergenic Intergenic -9707 ENSMUSG00000093041.1 ENSMUSG00000093041 ENSMUST00000175300 Gm26455 miRNA Interval_56038 chr14 105034584 105035387 + 0 NA Intergenic Intergenic -8465 ENSMUSG00000115195.1 ENSMUSG00000115195 ENSMUST00000227910 Gm5671 processed_pseudogene Interval_28477 chr11 76252760 76254249 + 0 NA Intergenic Intergenic 4292 ENSMUSG00000038046.4 ENSMUSG00000038046 ENSMUST00000155526 Mrm3 protein_coding Interval_88294 chr2 3449948 3450554 + 0 NA intron (ENSMUSG00000026648.18, intron 4 of 6) protein_coding-intron (ENSMUSG00000026648.18, intron 12 of 15) -2698 ENSMUSG00000026648.18 ENSMUSG00000026648 ENSMUST00000152468 Dclre1c protein_coding Interval_116433 chr4 111935626 111936415 + 0 NA intron (ENSMUSG00000078599.9, intron 3 of 6) protein_coding-intron (ENSMUSG00000078599.9, intron 3 of 5) 16465 ENSMUSG00000078599.9 ENSMUSG00000078599 ENSMUST00000129547 Skint8 protein_coding Interval_82460 chr18 74215911 74216753 + 0 NA exon (ENSMUSG00000024560.7, exon 1 of 15) protein_coding-exon (ENSMUSG00000024560.7, exon 1 of 15) -1539 ENSMUSG00000024560.7 ENSMUSG00000024560 ENSMUST00000236679 Cxxc1 protein_coding Interval_109445 chr3 142481900 142482405 + 0 NA Intergenic Intergenic -20644 ENSMUSG00000105504.4 ENSMUSG00000105504 ENSMUST00000199578 Gbp5 protein_coding Interval_80956 chr18 51004312 51004485 + 0 NA TTS (ENSMUSG00000118088.1) processed_pseudogene-TTS (ENSMUSG00000118088.1) 1294 ENSMUSG00000118088.1 ENSMUSG00000118088 ENSMUST00000236182 Gm3815 processed_pseudogene Interval_17628 chr10 78340312 78340615 + 0 NA promoter-TSS (ENSMUSG00000098885.1) miRNA-promoter-TSS (ENSMUSG00000098885.1) -256 ENSMUSG00000098885.1 ENSMUSG00000098885 ENSMUST00000184079 Mir7659 miRNA Interval_41242 chr12 112085814 112086754 + 0 NA Intergenic Intergenic -20395 ENSMUSG00000037686.6 ENSMUSG00000037686 ENSMUST00000222970 Aspg protein_coding Interval_58628 chr15 36679211 36680473 + 0 NA intron (ENSMUSG00000115127.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000115127.1, intron 1 of 1) -10261 ENSMUSG00000115834.1 ENSMUSG00000115834 ENSMUST00000226323 Gm10385 lincRNA Interval_64773 chr16 15620317 15621964 + 0 NA Intergenic Intergenic 12033 ENSMUSG00000116140.1 ENSMUSG00000116140 ENSMUST00000230520 Gm7748 processed_pseudogene Interval_173615 chrX 101059566 101060017 + 0 NA promoter-TSS (ENSMUSG00000009670.11) protein_coding-promoter-TSS (ENSMUSG00000009670.11) -124 ENSMUSG00000009670.11 ENSMUSG00000009670 ENSMUST00000113716 Tex11 protein_coding Interval_98360 chr2 151775163 151776195 + 0 NA Intergenic Intergenic 22566 ENSMUSG00000083088.1 ENSMUSG00000083088 ENSMUST00000119923 Gm14153 processed_pseudogene Interval_92835 chr2 66150054 66150252 + 0 NA intron (ENSMUSG00000100197.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000100197.1, intron 1 of 1) -4278 ENSMUSG00000080728.1 ENSMUSG00000080728 ENSMUST00000120600 Gm13616 processed_pseudogene Interval_14096 chr10 26938014 26939674 + 0 NA Intergenic Intergenic -10896 ENSMUSG00000112751.1 ENSMUSG00000112751 ENSMUST00000220276 Gm48084 antisense Interval_144646 chr7 27322111 27322830 + 0 NA intron (ENSMUSG00000040488.18, intron 17 of 22) protein_coding-intron (ENSMUSG00000040488.18, intron 20 of 32) 11178 ENSMUSG00000040488.18 ENSMUSG00000040488 ENSMUST00000206413 Ltbp4 protein_coding Interval_84236 chr19 8953188 8954349 + 0 NA promoter-TSS (ENSMUSG00000071645.6) protein_coding-promoter-TSS (ENSMUSG00000071645.6) 8673 ENSMUSG00000071646.9 ENSMUSG00000071646 ENSMUST00000151386 Mta2 protein_coding Interval_85495 chr19 27482778 27482994 + 0 NA Intergenic Intergenic -29622 ENSMUSG00000118072.1 ENSMUSG00000118072 ENSMUST00000235994 Gm50101 processed_pseudogene Interval_11572 chr1 182823834 182824247 + 0 NA intron (ENSMUSG00000038576.15, intron 2 of 2) protein_coding-intron (ENSMUSG00000038576.15, intron 1 of 7) 59484 ENSMUSG00000038576.15 ENSMUSG00000038576 ENSMUST00000085724 Susd4 protein_coding Interval_81197 chr18 56359081 56359818 + 0 NA Intergenic Intergenic -30694 ENSMUSG00000117688.1 ENSMUSG00000117688 ENSMUST00000235993 Gm8629 processed_pseudogene Interval_145804 chr7 39449250 39450067 + 0 NA promoter-TSS (ENSMUSG00000046372.4) transcribed_processed_pseudogene-promoter-TSS (ENSMUSG00000046372.4) 140 ENSMUSG00000030424.15 ENSMUSG00000030424 ENSMUST00000061201 Zfp939 transcribed_unprocessed_pseudogene Interval_2044 chr1 36084998 36085391 + 0 NA intron (ENSMUSG00000045216.7, intron 1 of 1) protein_coding-intron (ENSMUSG00000045216.7, intron 1 of 1) -16496 ENSMUSG00000045216.7 ENSMUSG00000045216 ENSMUST00000194670 Hs6st1 protein_coding Interval_81532 chr18 61505552 61508495 + 0 NA intron (ENSMUSG00000045094.8, intron 2 of 10) protein_coding-intron (ENSMUSG00000045094.8, intron 6 of 12) 22257 ENSMUSG00000117713.1 ENSMUSG00000117713 ENSMUST00000237683 Gm46637 lincRNA Interval_147099 chr7 62876923 62877505 + 0 NA Intergenic Intergenic -53541 ENSMUSG00000109344.1 ENSMUSG00000109344 ENSMUST00000207359 A26c2 protein_coding Interval_46490 chr13 66556055 66556964 + 0 NA Intergenic Intergenic -5289 ENSMUSG00000114434.1 ENSMUSG00000114434 ENSMUST00000224388 Gm48360 processed_pseudogene Interval_83122 chr18 81642670 81642972 + 0 NA intron (ENSMUSG00000118172.1, intron 2 of 2) lincRNA-intron (ENSMUSG00000118172.1, intron 2 of 2) -5074 ENSMUSG00000117870.1 ENSMUSG00000117870 ENSMUST00000236490 Gm41792 lincRNA Interval_146377 chr7 45593288 45593698 + 0 NA Intergenic Intergenic -3647 ENSMUSG00000109632.1 ENSMUSG00000109632 ENSMUST00000209936 Gm31479 lincRNA Interval_33990 chr11 119884626 119885255 + 0 NA TTS (ENSMUSG00000025583.15) protein_coding-TTS (ENSMUSG00000025583.15) 28631 ENSMUSG00000025583.15 ENSMUSG00000025583 ENSMUST00000131217 Rptor protein_coding Interval_43009 chr13 22882078 22882394 + 0 NA TTS (ENSMUSG00000071490.5) protein_coding-TTS (ENSMUSG00000071490.5) 1969 ENSMUSG00000071490.5 ENSMUSG00000071490 ENSMUST00000095960 Vmn1r212 protein_coding Interval_22167 chr11 6762329 6762520 + 0 NA Intergenic Intergenic 20714 ENSMUSG00000083819.1 ENSMUSG00000083819 ENSMUST00000118511 Gm11977 processed_pseudogene Interval_82151 chr18 68084231 68084975 + 0 NA intron (ENSMUSG00000024544.9, intron 2 of 5) protein_coding-intron (ENSMUSG00000024544.9, intron 2 of 5) 33771 ENSMUSG00000117891.1 ENSMUSG00000117891 ENSMUST00000236198 Gm41764 antisense Interval_107537 chr3 108356104 108356634 + 0 NA intron (ENSMUSG00000068747.14, intron 19 of 20) protein_coding-intron (ENSMUSG00000068747.14, intron 18 of 19) -5182 ENSMUSG00000078601.4 ENSMUSG00000078601 ENSMUST00000125412 Gm12525 lincRNA Interval_5472 chr1 89095822 89098622 + 0 NA exon (ENSMUSG00000102700.1, exon 1 of 1) TEC-exon (ENSMUSG00000102700.1, exon 1 of 1) 149 ENSMUSG00000102700.1 ENSMUSG00000102700 ENSMUST00000195426 Gm38312 TEC Interval_143278 chr7 4919325 4921521 + 0 NA exon (ENSMUSG00000074406.5, exon 3 of 3) protein_coding-exon (ENSMUSG00000074406.5, exon 3 of 3) -2554 ENSMUSG00000035285.6 ENSMUSG00000035285 ENSMUST00000208754 Nat14 protein_coding Interval_91831 chr2 49972596 49972846 + 0 NA Intergenic Intergenic -65841 ENSMUSG00000088825.1 ENSMUSG00000088825 ENSMUST00000158200 Gm25223 misc_RNA Interval_89744 chr2 25180287 25182152 + 0 NA exon (ENSMUSG00000078202.3, exon 1 of 1) protein_coding-exon (ENSMUSG00000078202.3, exon 1 of 1) 461 ENSMUSG00000078202.3 ENSMUSG00000078202 ENSMUST00000104999 Nrarp protein_coding Interval_60360 chr15 73162515 73162779 + 0 NA intron (ENSMUSG00000036698.11, intron 1 of 18) protein_coding-intron (ENSMUSG00000036698.11, intron 1 of 18) 15200 ENSMUSG00000036698.11 ENSMUSG00000036698 ENSMUST00000230464 Ago2 protein_coding Interval_62914 chr15 97863030 97863934 + 0 NA intron (ENSMUSG00000022479.15, intron 7 of 9) protein_coding-intron (ENSMUSG00000022479.15, intron 7 of 9) -31988 ENSMUSG00000022475.19 ENSMUSG00000022475 ENSMUST00000134258 Hdac7 protein_coding Interval_46097 chr13 61708250 61709275 + 0 NA promoter-TSS (ENSMUSG00000113471.1) lincRNA-promoter-TSS (ENSMUSG00000113471.1) -794 ENSMUSG00000113471.1 ENSMUSG00000113471 ENSMUST00000220710 Gm48116 lincRNA Interval_170633 chr9 109774096 109775383 + 0 NA promoter-TSS (ENSMUSG00000104614.5) protein_coding-promoter-TSS (ENSMUSG00000104614.5) 15931 ENSMUSG00000104614.5 ENSMUSG00000104614 ENSMUST00000199197 Fbxw27 protein_coding Interval_68011 chr16 63490576 63492607 + 0 NA intron (ENSMUSG00000116752.1, intron 1 of 3) lincRNA-intron (ENSMUSG00000116752.1, intron 1 of 3) 526 ENSMUSG00000116752.1 ENSMUSG00000116752 ENSMUST00000231817 Gm49622 lincRNA Interval_3072 chr1 52903414 52903936 + 0 NA intron (ENSMUSG00000041426.12, intron 1 of 3) protein_coding-intron (ENSMUSG00000041426.12, intron 9 of 13) -29677 ENSMUSG00000089802.1 ENSMUSG00000089802 ENSMUST00000162523 Gm16107 processed_pseudogene Interval_107355 chr3 106523757 106523926 + 0 NA intron (ENSMUSG00000040774.15, intron 4 of 8) protein_coding-intron (ENSMUSG00000040774.15, intron 4 of 8) 23858 ENSMUSG00000040774.15 ENSMUSG00000040774 ENSMUST00000141525 Cept1 protein_coding Interval_110986 chr4 11032924 11034015 + 0 NA Intergenic Intergenic -25542 ENSMUSG00000049969.3 ENSMUSG00000049969 ENSMUST00000137891 Plekhf2 protein_coding Interval_5595 chr1 90060023 90061057 + 0 NA intron (ENSMUSG00000026301.16, intron 1 of 1) protein_coding-intron (ENSMUSG00000026301.16, intron 15 of 18) -5580 ENSMUSG00000026301.16 ENSMUSG00000026301 ENSMUST00000186522 Iqca protein_coding Interval_73435 chr17 37238404 37240275 + 0 NA Intergenic Intergenic -2009 ENSMUSG00000058802.5 ENSMUSG00000058802 ENSMUST00000207414 Olfr97 protein_coding Interval_43085 chr13 23744524 23748170 + 0 NA promoter-TSS (ENSMUSG00000069310.4) protein_coding-promoter-TSS (ENSMUSG00000069310.4) 152 ENSMUSG00000080999.1 ENSMUSG00000080999 ENSMUST00000118168 H2ac5-ps unprocessed_pseudogene Interval_79825 chr18 35372341 35373094 + 0 NA intron (ENSMUSG00000024357.10, intron 2 of 2) protein_coding-intron (ENSMUSG00000024357.10, intron 3 of 9) 108688 ENSMUSG00000117876.1 ENSMUSG00000117876 ENSMUST00000236119 Gm50146 antisense Interval_165209 chr9 45361575 45362718 + 0 NA Intergenic Intergenic -8039 ENSMUSG00000066705.7 ENSMUSG00000066705 ENSMUST00000215281 Fxyd6 protein_coding Interval_162756 chr9 8543869 8545049 + 0 NA exon (ENSMUSG00000031997.9, exon 1 of 13) protein_coding-exon (ENSMUSG00000031997.9, exon 1 of 13) 263 ENSMUSG00000031997.9 ENSMUSG00000031997 ENSMUST00000214596 Trpc6 protein_coding Interval_139562 chr6 101150754 101151701 + 0 NA TTS (ENSMUSG00000035357.17) protein_coding-TTS (ENSMUSG00000035357.17) -4748 ENSMUSG00000107806.1 ENSMUSG00000107806 ENSMUST00000205008 Gm19726 processed_pseudogene Interval_19519 chr10 101893944 101894206 + 0 NA intron (ENSMUSG00000019888.16, intron 3 of 8) protein_coding-intron (ENSMUSG00000019888.16, intron 2 of 5) 121383 ENSMUSG00000092952.1 ENSMUSG00000092952 ENSMUST00000175211 Mir3059 miRNA Interval_102969 chr3 33895099 33896670 + 0 NA intron (ENSMUSG00000105475.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000105475.1, intron 1 of 2) 1700 ENSMUSG00000105475.1 ENSMUSG00000105475 ENSMUST00000197426 4930431L21Rik lincRNA Interval_66759 chr16 37108931 37109596 + 0 NA Intergenic Intergenic 97477 ENSMUSG00000034206.15 ENSMUSG00000034206 ENSMUST00000182717 Polq protein_coding Interval_57398 chr15 10577157 10577335 + 0 NA intron (ENSMUSG00000022246.14, intron 13 of 16) protein_coding-intron (ENSMUSG00000022246.14, intron 14 of 17) -15722 ENSMUSG00000052482.6 ENSMUSG00000052482 ENSMUST00000064353 Gm8174 processed_pseudogene Interval_55109 chr14 78203884 78204495 + 0 NA Intergenic Intergenic 4816 ENSMUSG00000115552.1 ENSMUSG00000115552 ENSMUST00000228898 Gm48959 processed_pseudogene Interval_140031 chr6 113541809 113542091 + 0 NA intron (ENSMUSG00000034023.16, intron 7 of 42) protein_coding-intron (ENSMUSG00000034023.16, intron 7 of 43) 10246 ENSMUSG00000034023.16 ENSMUSG00000034023 ENSMUST00000124262 Fancd2 protein_coding Interval_53687 chr14 60893764 60894102 + 0 NA intron (ENSMUSG00000021993.10, intron 18 of 19) protein_coding-intron (ENSMUSG00000021993.10, intron 18 of 18) 109351 ENSMUSG00000021993.10 ENSMUSG00000021993 ENSMUST00000223709 Mipep protein_coding Interval_85866 chr19 32522901 32524911 + 0 NA Intergenic Intergenic -19442 ENSMUSG00000118168.1 ENSMUSG00000118168 ENSMUST00000237957 Gm36419 lincRNA Interval_39620 chr12 91612126 91613060 + 0 NA Intergenic Intergenic 5084 ENSMUSG00000113943.1 ENSMUSG00000113943 ENSMUST00000222304 Gm47804 lincRNA Interval_45348 chr13 54605330 54605811 + 0 NA intron (ENSMUSG00000047547.14, intron 2 of 3) protein_coding-intron (ENSMUSG00000047547.14, intron 2 of 5) 5722 ENSMUSG00000047547.14 ENSMUSG00000047547 ENSMUST00000146301 Cltb protein_coding Interval_66451 chr16 33948686 33949167 + 0 NA exon (ENSMUSG00000022817.15, exon 15 of 15) protein_coding-exon (ENSMUSG00000022817.15, exon 15 of 15) -17313 ENSMUSG00000086083.1 ENSMUSG00000086083 ENSMUST00000145415 Gm15829 antisense Interval_73471 chr17 37719388 37719559 + 0 NA Intergenic Intergenic -2335 ENSMUSG00000063994.5 ENSMUSG00000063994 ENSMUST00000077498 Olfr120 protein_coding Interval_40438 chr12 104892906 104894016 + 0 NA Intergenic Intergenic -28385 ENSMUSG00000021097.15 ENSMUSG00000021097 ENSMUST00000222412 Clmn protein_coding Interval_101551 chr3 5399235 5399470 + 0 NA exon (ENSMUSG00000025255.18, exon 10 of 11) protein_coding-exon (ENSMUSG00000025255.18, exon 10 of 11) 115981 ENSMUSG00000093557.1 ENSMUSG00000093557 ENSMUST00000176666 4930555M17Rik lincRNA Interval_28335 chr11 75264491 75266308 + 0 NA exon (ENSMUSG00000045287.6, exon 2 of 2) protein_coding-exon (ENSMUSG00000045287.6, exon 2 of 2) 53209 ENSMUSG00000106179.1 ENSMUSG00000106179 ENSMUST00000198372 Gm47300 miRNA Interval_146648 chr7 49125322 49125958 + 0 NA intron (ENSMUSG00000108950.1, intron 2 of 2) protein_coding-intron (ENSMUSG00000052512.17, intron 2 of 39) 8636 ENSMUSG00000108950.1 ENSMUSG00000108950 ENSMUST00000208621 9130015G15Rik antisense Interval_3740 chr1 62701161 62701414 + 0 NA Intergenic Intergenic -1998 ENSMUSG00000025969.15 ENSMUSG00000025969 ENSMUST00000114157 Nrp2 protein_coding Interval_120156 chr4 143108733 143108979 + 0 NA exon (ENSMUSG00000057637.13, exon 10 of 10) protein_coding-exon (ENSMUSG00000057637.13, exon 10 of 10) 27306 ENSMUSG00000106597.1 ENSMUSG00000106597 ENSMUST00000197026 Mir7021 miRNA Interval_95588 chr2 112512732 112513338 + 0 NA intron (ENSMUSG00000003604.14, intron 1 of 5) protein_coding-intron (ENSMUSG00000003604.14, intron 1 of 5) 12166 ENSMUSG00000080622.1 ENSMUSG00000080622 ENSMUST00000116972 Gm22676 snoRNA Interval_17019 chr10 70470582 70471380 + 0 NA intron (ENSMUSG00000043259.15, intron 4 of 10) protein_coding-intron (ENSMUSG00000043259.15, intron 3 of 13) 30275 ENSMUSG00000043259.15 ENSMUSG00000043259 ENSMUST00000062883 Fam13c protein_coding Interval_119079 chr4 135394814 135395433 + 0 NA intron (ENSMUSG00000043924.16, intron 1 of 3) protein_coding-intron (ENSMUSG00000043924.16, intron 1 of 4) 3104 ENSMUSG00000043924.16 ENSMUSG00000043924 ENSMUST00000154518 Ncmap protein_coding Interval_34984 chr12 16344139 16344335 + 0 NA Intergenic Intergenic -112010 ENSMUSG00000113892.1 ENSMUSG00000113892 ENSMUST00000220475 Gm48605 lincRNA Interval_26768 chr11 60335984 60336441 + 0 NA intron (ENSMUSG00000000538.18, intron 1 of 8) protein_coding-intron (ENSMUSG00000000538.18, intron 1 of 12) -7033 ENSMUSG00000082148.1 ENSMUSG00000082148 ENSMUST00000120311 Gm12266 processed_pseudogene Interval_27965 chr11 71634913 71635129 + 0 NA Intergenic Intergenic 23456 ENSMUSG00000087116.1 ENSMUSG00000087116 ENSMUST00000130837 Gm12324 lincRNA Interval_67500 chr16 49948047 49949339 + 0 NA Intergenic Intergenic 93048 ENSMUSG00000055447.19 ENSMUSG00000055447 ENSMUST00000229104 Cd47 protein_coding Interval_5767 chr1 91589736 91590186 + 0 NA Intergenic Intergenic -21445 ENSMUSG00000101705.1 ENSMUSG00000101705 ENSMUST00000188800 Gm28380 lincRNA Interval_86047 chr19 35992265 35992520 + 0 NA intron (ENSMUSG00000024798.15, intron 1 of 3) protein_coding-intron (ENSMUSG00000024798.15, intron 1 of 3) 65115 ENSMUSG00000024798.15 ENSMUSG00000024798 ENSMUST00000099505 Htr7 protein_coding Interval_24416 chr11 33099542 33100448 + 0 NA Intergenic Intergenic 31444 ENSMUSG00000087318.1 ENSMUSG00000087318 ENSMUST00000147896 Gm12114 lincRNA Interval_145264 chr7 31038925 31039210 + 0 NA promoter-TSS (ENSMUSG00000009687.14) protein_coding-promoter-TSS (ENSMUSG00000009687.14) -1129 ENSMUSG00000009687.14 ENSMUSG00000009687 ENSMUST00000161259 Fxyd5 protein_coding Interval_101608 chr3 7667989 7668192 + 0 NA intron (ENSMUSG00000097804.1, intron 2 of 2) antisense-intron (ENSMUSG00000097804.1, intron 2 of 2) -54363 ENSMUSG00000040329.14 ENSMUSG00000040329 ENSMUST00000191681 Il7 protein_coding Interval_100040 chr2 166699856 166700753 + 0 NA intron (ENSMUSG00000039621.13, intron 1 of 2) protein_coding-intron (ENSMUSG00000039621.13, intron 1 of 39) 3290 ENSMUSG00000039621.13 ENSMUSG00000039621 ENSMUST00000140624 Prex1 protein_coding Interval_9750 chr1 161747765 161749205 + 0 NA TTS (ENSMUSG00000102399.1) processed_pseudogene-TTS (ENSMUSG00000102399.1) 2429 ENSMUSG00000102399.1 ENSMUSG00000102399 ENSMUST00000195878 Gm5049 processed_pseudogene Interval_94764 chr2 94096916 94097373 + 0 NA intron (ENSMUSG00000027195.10, intron 2 of 9) protein_coding-intron (ENSMUSG00000027195.10, intron 3 of 10) -30380 ENSMUSG00000027195.10 ENSMUSG00000027195 ENSMUST00000141955 Hsd17b12 protein_coding Interval_161834 chr8 123101907 123103634 + 0 NA promoter-TSS (ENSMUSG00000064450.1) snoRNA-promoter-TSS (ENSMUSG00000064450.1) -268 ENSMUSG00000064450.1 ENSMUSG00000064450 ENSMUST00000082516 Snord68 snoRNA Interval_31588 chr11 101541962 101542564 + 0 NA intron (ENSMUSG00000017146.12, intron 1 of 4) protein_coding-intron (ENSMUSG00000017146.12, intron 2 of 22) -17256 ENSMUSG00000017119.19 ENSMUSG00000017119 ENSMUST00000141170 Nbr1 protein_coding Interval_97730 chr2 143581413 143582199 + 0 NA intron (ENSMUSG00000027419.9, intron 2 of 11) protein_coding-intron (ENSMUSG00000027419.9, intron 2 of 11) 35535 ENSMUSG00000027419.9 ENSMUSG00000027419 ENSMUST00000124751 Pcsk2 protein_coding Interval_53523 chr14 58149912 58150493 + 0 NA Intergenic Intergenic -44073 ENSMUSG00000091132.1 ENSMUSG00000091132 ENSMUST00000163985 Gm17109 processed_pseudogene Interval_107478 chr3 107974905 107975178 + 0 NA Intergenic Intergenic -4591 ENSMUSG00000049231.6 ENSMUSG00000049231 ENSMUST00000138778 Gm12497 processed_pseudogene Interval_52507 chr14 47181172 47182836 + 0 NA intron (ENSMUSG00000037580.10, intron 1 of 5) protein_coding-intron (ENSMUSG00000037580.10, intron 1 of 5) -3458 ENSMUSG00000115764.1 ENSMUSG00000115764 ENSMUST00000226918 Gm18811 processed_pseudogene Interval_59238 chr15 49422072 49422287 + 0 NA Intergenic Intergenic -116016 ENSMUSG00000065760.1 ENSMUSG00000065760 ENSMUST00000083826 Gm23848 snRNA Interval_31126 chr11 98321454 98321739 + 0 NA Intergenic Intergenic 8052 ENSMUSG00000038255.6 ENSMUSG00000038255 ENSMUST00000041685 Neurod2 protein_coding Interval_161425 chr8 120393879 120394288 + 0 NA intron (ENSMUSG00000031822.20, intron 2 of 2) protein_coding-intron (ENSMUSG00000092329.1, intron 1 of 15) 49466 ENSMUSG00000080549.2 ENSMUSG00000080549 ENSMUST00000116899 Gm22715 miRNA Interval_156085 chr8 43931663 43932371 + 0 NA Intergenic Intergenic -17413 ENSMUSG00000109993.1 ENSMUSG00000109993 ENSMUST00000209295 Gm45659 lincRNA Interval_62281 chr15 89425606 89426116 + 0 NA promoter-TSS (ENSMUSG00000078937.8) protein_coding-promoter-TSS (ENSMUSG00000078937.8) 2632 ENSMUSG00000022617.15 ENSMUSG00000022617 ENSMUST00000170460 Chkb protein_coding Interval_112803 chr4 45097095 45098183 + 0 NA Intergenic Intergenic 10475 ENSMUSG00000078713.8 ENSMUSG00000078713 ENSMUST00000107807 Tomm5 protein_coding Interval_164166 chr9 32122347 32122609 + 0 NA intron (ENSMUSG00000041444.14, intron 1 of 21) protein_coding-intron (ENSMUSG00000041444.14, intron 1 of 21) 44197 ENSMUSG00000110840.1 ENSMUSG00000110840 ENSMUST00000214707 Gm47496 processed_pseudogene Interval_135536 chr6 40111838 40112120 + 0 NA intron (ENSMUSG00000057716.7, intron 1 of 2) protein_coding-intron (ENSMUSG00000057716.7, intron 1 of 2) -6800 ENSMUSG00000097563.1 ENSMUSG00000097563 ENSMUST00000181762 Gm26638 sense_intronic Interval_110137 chr3 153654650 153655541 + 0 NA intron (ENSMUSG00000052544.9, intron 1 of 4) protein_coding-intron (ENSMUSG00000052544.9, intron 1 of 2) 33393 ENSMUSG00000089376.1 ENSMUSG00000089376 ENSMUST00000158751 Gm22136 misc_RNA Interval_119159 chr4 135905040 135905500 + 0 NA intron (ENSMUSG00000062585.11, intron 1 of 1) protein_coding-intron (ENSMUSG00000062585.11, intron 1 of 1) 9876 ENSMUSG00000062585.11 ENSMUSG00000062585 ENSMUST00000068830 Cnr2 protein_coding Interval_168720 chr9 86302863 86303226 + 0 NA Intergenic Intergenic 13640 ENSMUSG00000083731.1 ENSMUSG00000083731 ENSMUST00000117532 Gm16202 processed_pseudogene Interval_59930 chr15 62043239 62045259 + 0 NA intron (ENSMUSG00000097039.8, intron 1 of 6) lincRNA-intron (ENSMUSG00000097039.8, intron 1 of 8) 4992 ENSMUSG00000097039.8 ENSMUSG00000097039 ENSMUST00000182141 Pvt1 lincRNA Interval_89365 chr2 19909140 19911109 + 0 NA exon (ENSMUSG00000036617.17, exon 1 of 8) protein_coding-exon (ENSMUSG00000036617.17, exon 1 of 8) 21471 ENSMUSG00000105927.1 ENSMUSG00000105927 ENSMUST00000198109 Gm44457 miRNA Interval_35490 chr12 23021565 23022040 + 0 NA Intergenic Intergenic -2990 ENSMUSG00000112996.1 ENSMUSG00000112996 ENSMUST00000223360 Gm48064 processed_pseudogene Interval_44089 chr13 40817061 40818078 + 0 NA Intergenic Intergenic 21087 ENSMUSG00000114263.1 ENSMUSG00000114263 ENSMUST00000225513 Gm7201 processed_pseudogene Interval_52418 chr14 45858519 45858754 + 0 NA promoter-TSS (ENSMUSG00000084276.1) processed_pseudogene-promoter-TSS (ENSMUSG00000084276.1) -90 ENSMUSG00000084276.1 ENSMUSG00000084276 ENSMUST00000121261 Gm8317 processed_pseudogene Interval_85348 chr19 25078167 25078447 + 0 NA intron (ENSMUSG00000052085.7, intron 1 of 1) protein_coding-intron (ENSMUSG00000052085.7, intron 5 of 47) 25694 ENSMUSG00000052085.7 ENSMUSG00000052085 ENSMUST00000236576 Dock8 protein_coding Interval_119381 chr4 137356567 137358478 + 0 NA intron (ENSMUSG00000006699.17, intron 1 of 5) protein_coding-intron (ENSMUSG00000006699.17, intron 1 of 5) 198 ENSMUSG00000006699.17 ENSMUSG00000006699 ENSMUST00000030417 Cdc42 protein_coding Interval_26235 chr11 55343156 55344519 + 0 NA Intergenic Intergenic -31580 ENSMUSG00000055333.14 ENSMUSG00000055333 ENSMUST00000108864 Fat2 protein_coding Interval_61698 chr15 83473838 83474684 + 0 NA Intergenic Intergenic 36532 ENSMUSG00000022442.16 ENSMUSG00000022442 ENSMUST00000154401 Ttll1 protein_coding Interval_42 GL456212.1 57947 58282 + 0 NA NA NA NA NA Interval_129057 chr5 117119701 117120606 + 0 NA promoter-TSS (ENSMUSG00000061288.13) protein_coding-promoter-TSS (ENSMUSG00000061288.13) 4935 ENSMUSG00000086047.1 ENSMUSG00000086047 ENSMUST00000149413 9530046B11Rik antisense Interval_22174 chr11 6808691 6808914 + 0 NA Intergenic Intergenic 17007 ENSMUSG00000082897.1 ENSMUSG00000082897 ENSMUST00000121480 Gm11982 processed_pseudogene Interval_164657 chr9 40358134 40358456 + 0 NA intron (ENSMUSG00000040111.17, intron 2 of 20) protein_coding-intron (ENSMUSG00000040111.17, intron 2 of 19) 8607 ENSMUSG00000110928.1 ENSMUSG00000110928 ENSMUST00000214407 Gm48114 TEC Interval_109479 chr3 142813548 142813715 + 0 NA intron (ENSMUSG00000004591.16, intron 1 of 6) protein_coding-intron (ENSMUSG00000004591.16, intron 8 of 21) -10511 ENSMUSG00000004591.16 ENSMUSG00000004591 ENSMUST00000197529 Pkn2 protein_coding Interval_98265 chr2 150650444 150651152 + 0 NA intron (ENSMUSG00000027452.11, intron 2 of 4) protein_coding-intron (ENSMUSG00000027452.11, intron 2 of 13) -12683 ENSMUSG00000027452.11 ENSMUSG00000027452 ENSMUST00000141785 Acss1 protein_coding Interval_95350 chr2 106839647 106839932 + 0 NA intron (ENSMUSG00000016386.15, intron 4 of 6) protein_coding-intron (ENSMUSG00000016386.15, intron 4 of 6) 30453 ENSMUSG00000105450.1 ENSMUSG00000105450 ENSMUST00000199948 Gm22813 scaRNA Interval_21257 chr10 127520018 127520562 + 0 NA TTS (ENSMUSG00000025403.5) protein_coding-TTS (ENSMUSG00000025403.5) -1514 ENSMUSG00000025403.5 ENSMUSG00000025403 ENSMUST00000217682 Shmt2 protein_coding Interval_106070 chr3 92471926 92472164 + 0 NA Intergenic Intergenic 1498 ENSMUSG00000102345.1 ENSMUSG00000102345 ENSMUST00000191733 Gm37377 processed_pseudogene Interval_92958 chr2 68967950 68968496 + 0 NA intron (ENSMUSG00000027035.10, intron 1 of 3) protein_coding-intron (ENSMUSG00000027035.10, intron 3 of 9) 6006 ENSMUSG00000103734.1 ENSMUSG00000103734 ENSMUST00000194679 Gm37651 TEC Interval_73578 chr17 40668459 40668709 + 0 NA Intergenic Intergenic -29486 ENSMUSG00000117279.1 ENSMUSG00000117279 ENSMUST00000232992 Gm49850 unprocessed_pseudogene Interval_38174 chr12 76187765 76189131 + 0 NA Intergenic Intergenic -11189 ENSMUSG00000021055.14 ENSMUSG00000021055 ENSMUST00000076634 Esr2 protein_coding Interval_109750 chr3 146543710 146545040 + 0 NA Intergenic Intergenic 18894 ENSMUSG00000105407.1 ENSMUSG00000105407 ENSMUST00000197340 Gm36259 processed_pseudogene Interval_7953 chr1 134775095 134775349 + 0 NA intron (ENSMUSG00000073557.12, intron 4 of 6) protein_coding-intron (ENSMUSG00000073557.12, intron 21 of 23) 26763 ENSMUSG00000103614.1 ENSMUSG00000103614 ENSMUST00000192808 Gm37949 TEC Interval_73912 chr17 45448499 45450585 + 0 NA exon (ENSMUSG00000023935.10, exon 7 of 8) protein_coding-exon (ENSMUSG00000023935.10, exon 7 of 8) 15711 ENSMUSG00000097119.2 ENSMUSG00000097119 ENSMUST00000233673 B230354K17Rik bidirectional_promoter_lncRNA Interval_74993 chr17 59110132 59110569 + 0 NA Intergenic Intergenic 93036 ENSMUSG00000086594.2 ENSMUSG00000086594 ENSMUST00000167453 Nudt12os antisense Interval_69120 chr16 90779693 90780419 + 0 NA intron (ENSMUSG00000039929.14, intron 18 of 38) protein_coding-intron (ENSMUSG00000039929.14, intron 18 of 38) 30336 ENSMUSG00000039929.14 ENSMUSG00000039929 ENSMUST00000128989 Urb1 protein_coding Interval_98935 chr2 156119327 156119566 + 0 NA intron (ENSMUSG00000098950.7, intron 3 of 6) protein_coding-intron (ENSMUSG00000098950.7, intron 3 of 7) -7485 ENSMUSG00000089824.10 ENSMUSG00000089824 ENSMUST00000138068 Rbm12 protein_coding Interval_44563 chr13 46065206 46065946 + 0 NA intron (ENSMUSG00000113860.1, intron 5 of 6) lincRNA-intron (ENSMUSG00000113860.1, intron 5 of 6) 4979 ENSMUSG00000113860.1 ENSMUSG00000113860 ENSMUST00000222657 Gm45949 lincRNA Interval_152254 chr7 130958588 130959406 + 0 NA intron (ENSMUSG00000006205.13, intron 1 of 8) protein_coding-intron (ENSMUSG00000006205.13, intron 1 of 8) 15508 ENSMUSG00000006205.13 ENSMUSG00000006205 ENSMUST00000150905 Htra1 protein_coding Interval_81733 chr18 64089393 64089847 + 0 NA Intergenic Intergenic -8200 ENSMUSG00000117673.1 ENSMUSG00000117673 ENSMUST00000237015 Gm6974 processed_pseudogene Interval_90859 chr2 33008575 33009293 + 0 NA promoter-TSS (ENSMUSG00000038860.15) protein_coding-promoter-TSS (ENSMUSG00000038860.15) -6619 ENSMUSG00000104277.1 ENSMUSG00000104277 ENSMUST00000193214 Gm38299 TEC Interval_156286 chr8 46965505 46966800 + 0 NA Intergenic Intergenic -17353 ENSMUSG00000109759.1 ENSMUSG00000109759 ENSMUST00000210613 1700011L03Rik lincRNA Interval_17020 chr10 70476347 70476773 + 0 NA intron (ENSMUSG00000043259.15, intron 4 of 10) protein_coding-intron (ENSMUSG00000043259.15, intron 3 of 13) 24943 ENSMUSG00000087774.1 ENSMUSG00000087774 ENSMUST00000157149 Gm22320 misc_RNA Interval_119888 chr4 140694604 140695219 + 0 NA Intergenic Intergenic 2214 ENSMUSG00000095878.1 ENSMUSG00000095878 ENSMUST00000175041 Gm23045 miRNA Interval_168527 chr9 83101697 83101933 + 0 NA intron (ENSMUSG00000111774.1, intron 2 of 2) lincRNA-intron (ENSMUSG00000111774.1, intron 2 of 2) 3591 ENSMUSG00000111774.1 ENSMUSG00000111774 ENSMUST00000217211 Gm38398 lincRNA Interval_52534 chr14 47354005 47355456 + 0 NA Intergenic Intergenic -19186 ENSMUSG00000050335.17 ENSMUSG00000050335 ENSMUST00000146468 Lgals3 protein_coding Interval_130579 chr5 128999709 129001012 + 0 NA promoter-TSS (ENSMUSG00000029428.13) protein_coding-promoter-TSS (ENSMUSG00000029428.13) 8186 ENSMUSG00000029428.13 ENSMUSG00000029428 ENSMUST00000199813 Stx2 protein_coding Interval_13594 chr10 20073094 20073907 + 0 NA intron (ENSMUSG00000071369.11, intron 10 of 28) protein_coding-intron (ENSMUSG00000071369.11, intron 11 of 29) -51301 ENSMUSG00000071369.11 ENSMUSG00000071369 ENSMUST00000156369 Map3k5 protein_coding Interval_124431 chr5 46444019 46444416 + 0 NA Intergenic Intergenic 29873 ENSMUSG00000067321.5 ENSMUSG00000067321 ENSMUST00000121537 Gm7931 processed_pseudogene Interval_166983 chr9 64296989 64297544 + 0 NA intron (ENSMUSG00000032397.7, intron 6 of 7) protein_coding-intron (ENSMUSG00000032397.7, intron 6 of 7) 1335 ENSMUSG00000088254.1 ENSMUSG00000088254 ENSMUST00000157629 Gm24289 scaRNA Interval_84304 chr19 9954737 9955034 + 0 NA Intergenic Intergenic -12053 ENSMUSG00000118123.1 ENSMUSG00000118123 ENSMUST00000237966 Gm50346 TEC Interval_28535 chr11 76577717 76578511 + 0 NA promoter-TSS (ENSMUSG00000017631.19) protein_coding-promoter-TSS (ENSMUSG00000017631.19) -23205 ENSMUSG00000024205.7 ENSMUSG00000024205 ENSMUST00000136893 Rpl36-ps2 processed_pseudogene Interval_132236 chr5 143514881 143515236 + 0 NA intron (ENSMUSG00000001847.14, intron 2 of 5) protein_coding-intron (ENSMUSG00000001847.14, intron 2 of 5) 3124 ENSMUSG00000001847.14 ENSMUSG00000001847 ENSMUST00000131513 Rac1 protein_coding Interval_81131 chr18 54577903 54578161 + 0 NA Intergenic Intergenic -33712 ENSMUSG00000118154.1 ENSMUSG00000118154 ENSMUST00000237954 9330117O12Rik lincRNA Interval_16801 chr10 68239223 68240724 + 0 NA intron (ENSMUSG00000019947.10, intron 3 of 9) protein_coding-intron (ENSMUSG00000019947.10, intron 3 of 10) 38767 ENSMUSG00000019947.10 ENSMUSG00000019947 ENSMUST00000218425 Arid5b protein_coding Interval_88953 chr2 13471330 13472354 + 0 NA intron (ENSMUSG00000026726.10, intron 10 of 66) protein_coding-intron (ENSMUSG00000026726.10, intron 10 of 66) -16215 ENSMUSG00000026726.10 ENSMUSG00000026726 ENSMUST00000148506 Cubn protein_coding Interval_3270 chr1 55351106 55352627 + 0 NA intron (ENSMUSG00000025977.15, intron 1 of 1) protein_coding-intron (ENSMUSG00000025977.15, intron 3 of 9) 8875 ENSMUSG00000025977.15 ENSMUSG00000025977 ENSMUST00000174065 Boll protein_coding Interval_128466 chr5 113476846 113477875 + 0 NA Intergenic Intergenic -101428 ENSMUSG00000063430.9 ENSMUSG00000063430 ENSMUST00000198673 Wscd2 protein_coding Interval_27525 chr11 68399265 68401787 + 0 NA exon (ENSMUSG00000020902.12, exon 2 of 8) protein_coding-exon (ENSMUSG00000020902.12, exon 2 of 8) -13514 ENSMUSG00000020902.12 ENSMUSG00000020902 ENSMUST00000135141 Ntn1 protein_coding Interval_123255 chr5 30920810 30922114 + 0 NA promoter-TSS (ENSMUSG00000029162.15) protein_coding-promoter-TSS (ENSMUSG00000029162.15) -396 ENSMUSG00000029162.15 ENSMUSG00000029162 ENSMUST00000200978 Khk protein_coding Interval_100110 chr2 167125579 167125997 + 0 NA intron (ENSMUSG00000050556.9, intron 1 of 1) protein_coding-intron (ENSMUSG00000050556.9, intron 2 of 2) 32229 ENSMUSG00000083436.1 ENSMUSG00000083436 ENSMUST00000121824 Gm11471 processed_pseudogene Interval_51257 chr14 25574240 25575154 + 0 NA intron (ENSMUSG00000007817.15, intron 4 of 23) protein_coding-intron (ENSMUSG00000007817.15, intron 4 of 23) 40258 ENSMUSG00000093081.1 ENSMUSG00000093081 ENSMUST00000175340 Mir3075 miRNA Interval_5528 chr1 89580016 89581834 + 0 NA exon (ENSMUSG00000055013.16, exon 1 of 18) protein_coding-exon (ENSMUSG00000055013.16, exon 1 of 18) 12160 ENSMUSG00000101662.1 ENSMUSG00000101662 ENSMUST00000191576 Gm28499 sense_intronic Interval_167945 chr9 74853896 74854650 + 0 NA exon (ENSMUSG00000101596.1, exon 1 of 1) lincRNA-exon (ENSMUSG00000101596.1, exon 1 of 1) 1112 ENSMUSG00000101596.1 ENSMUSG00000101596 ENSMUST00000188354 Gm28182 lincRNA Interval_32890 chr11 112833140 112833759 + 0 NA TTS (ENSMUSG00000020624.3) lincRNA-TTS (ENSMUSG00000020624.3) 8270 ENSMUSG00000020624.3 ENSMUSG00000020624 ENSMUST00000153429 4933434M16Rik lincRNA Interval_70704 chr17 13689748 13690253 + 0 NA intron (ENSMUSG00000117063.1, intron 1 of 4) lincRNA-intron (ENSMUSG00000117063.1, intron 1 of 4) -6513 ENSMUSG00000085705.1 ENSMUSG00000085705 ENSMUST00000128138 Gm16046 lincRNA Interval_105176 chr3 83213441 83213794 + 0 NA intron (ENSMUSG00000102692.1, intron 1 of 19) protein_coding-intron (ENSMUSG00000102692.1, intron 1 of 19) -84371 ENSMUSG00000074517.2 ENSMUSG00000074517 ENSMUST00000047876 Gm10710 lincRNA Interval_69992 chr17 4120176 4120420 + 0 NA TTS (ENSMUSG00000116615.1) processed_transcript-TTS (ENSMUSG00000116615.1) 1804 ENSMUSG00000116615.1 ENSMUSG00000116615 ENSMUST00000231319 4930548J01Rik processed_transcript Interval_130613 chr5 129214045 129214647 + 0 NA Intergenic Intergenic -85829 ENSMUSG00000060419.8 ENSMUSG00000060419 ENSMUST00000140155 Rps16-ps2 processed_pseudogene Interval_35149 chr12 17578418 17579574 + 0 NA TTS (ENSMUSG00000113093.1) processed_transcript-TTS (ENSMUSG00000113093.1) -10147 ENSMUSG00000113131.1 ENSMUSG00000113131 ENSMUST00000222500 Gm48290 processed_pseudogene Interval_171751 chr9 120723270 120723568 + 0 NA Intergenic Intergenic -17182 ENSMUSG00000111679.1 ENSMUSG00000111679 ENSMUST00000213340 Gm47063 TEC Interval_78524 chr18 14308394 14308627 + 0 NA TTS (ENSMUSG00000117365.1) lincRNA-TTS (ENSMUSG00000117365.1) 123 ENSMUSG00000117470.1 ENSMUSG00000117470 ENSMUST00000234483 Gm50095 processed_pseudogene Interval_56883 chr14 122790001 122790445 + 0 NA promoter-TSS (ENSMUSG00000041650.15) protein_coding-promoter-TSS (ENSMUSG00000041650.15) 103907 ENSMUSG00000115264.1 ENSMUSG00000115264 ENSMUST00000226674 Gm49260 TEC Interval_80399 chr18 41826070 41826605 + 0 NA intron (ENSMUSG00000117745.1, intron 1 of 3) lincRNA-intron (ENSMUSG00000117745.1, intron 1 of 3) 48497 ENSMUSG00000117745.1 ENSMUSG00000117745 ENSMUST00000235677 Gm50410 lincRNA Interval_69197 chr16 91269364 91271441 + 0 NA exon (ENSMUSG00000046160.6, exon 1 of 1) protein_coding-exon (ENSMUSG00000046160.6, exon 1 of 1) 630 ENSMUSG00000046160.6 ENSMUSG00000046160 ENSMUST00000056882 Olig1 protein_coding Interval_66619 chr16 35691769 35692065 + 0 NA Intergenic Intergenic 30316 ENSMUSG00000087793.1 ENSMUSG00000087793 ENSMUST00000157168 Gm25967 snoRNA Interval_131229 chr5 135917348 135918891 + 0 NA intron (ENSMUSG00000051391.9, intron 1 of 2) protein_coding-intron (ENSMUSG00000051391.9, intron 1 of 1) 16435 ENSMUSG00000051391.9 ENSMUSG00000051391 ENSMUST00000126192 Ywhag protein_coding Interval_166981 chr9 64292980 64293397 + 0 NA intron (ENSMUSG00000032397.7, intron 4 of 7) protein_coding-intron (ENSMUSG00000032397.7, intron 4 of 7) -2743 ENSMUSG00000088254.1 ENSMUSG00000088254 ENSMUST00000157629 Gm24289 scaRNA Interval_167874 chr9 73203302 73203516 + 0 NA intron (ENSMUSG00000098875.1, intron 1 of 3) lincRNA-intron (ENSMUSG00000098875.1, intron 1 of 3) 10926 ENSMUSG00000098875.1 ENSMUSG00000098875 ENSMUST00000183507 Gm27211 lincRNA Interval_112846 chr4 45482353 45484010 + 0 NA promoter-TSS (ENSMUSG00000044813.15) protein_coding-promoter-TSS (ENSMUSG00000044813.15) -379 ENSMUSG00000044813.15 ENSMUSG00000044813 ENSMUST00000147448 Shb protein_coding Interval_43280 chr13 28660525 28661942 + 0 NA intron (ENSMUSG00000085936.7, intron 5 of 7) processed_transcript-intron (ENSMUSG00000085936.7, intron 4 of 5) 49640 ENSMUSG00000099158.1 ENSMUSG00000099158 ENSMUST00000184136 Mir6368 miRNA Interval_82598 chr18 75373942 75374340 + 0 NA promoter-TSS (ENSMUSG00000025880.11) protein_coding-promoter-TSS (ENSMUSG00000025880.11) 5151 ENSMUSG00000025880.11 ENSMUSG00000025880 ENSMUST00000172718 Smad7 protein_coding Interval_12911 chr10 7970754 7971169 + 0 NA Intergenic Intergenic -15068 ENSMUSG00000015755.16 ENSMUSG00000015755 ENSMUST00000130322 Tab2 protein_coding Interval_89209 chr2 18063903 18065789 + 0 NA promoter-TSS (ENSMUSG00000026743.16) protein_coding-promoter-TSS (ENSMUSG00000026743.16) 5 ENSMUSG00000026743.16 ENSMUSG00000026743 ENSMUST00000149786 Mllt10 protein_coding Interval_75414 chr17 66438840 66440225 + 0 NA promoter-TSS (ENSMUSG00000052105.17) protein_coding-promoter-TSS (ENSMUSG00000052105.17) -500 ENSMUSG00000052105.17 ENSMUSG00000052105 ENSMUST00000127259 Mtcl1 protein_coding Interval_83319 chr18 84166564 84167226 + 0 NA intron (ENSMUSG00000048410.17, intron 2 of 2) protein_coding-intron (ENSMUSG00000048410.17, intron 2 of 2) -36029 ENSMUSG00000118385.1 ENSMUSG00000118385 ENSMUST00000238064 Gm50311 antisense Interval_145639 chr7 36658020 36658651 + 0 NA Intergenic Intergenic -37103 ENSMUSG00000104330.1 ENSMUSG00000104330 ENSMUST00000192928 Gm38285 TEC Interval_101480 chr2 181696857 181697662 + 0 NA exon (ENSMUSG00000045794.3, exon 2 of 4) protein_coding-exon (ENSMUSG00000045794.3, exon 2 of 4) 157 ENSMUSG00000045794.3 ENSMUSG00000045794 ENSMUST00000132409 Lkaaear1 protein_coding Interval_4635 chr1 75570313 75570696 + 0 NA Intergenic Intergenic 2421 ENSMUSG00000083244.1 ENSMUSG00000083244 ENSMUST00000117745 Gm15180 processed_pseudogene Interval_29587 chr11 85189908 85190230 + 0 NA exon (ENSMUSG00000018481.9, exon 13 of 13) protein_coding-exon (ENSMUSG00000018481.9, exon 13 of 13) 19665 ENSMUSG00000018479.12 ENSMUSG00000018479 ENSMUST00000018623 1700125H20Rik protein_coding Interval_106482 chr3 96629318 96630546 + 0 NA promoter-TSS (ENSMUSG00000038374.10) protein_coding-promoter-TSS (ENSMUSG00000038374.10) -112 ENSMUSG00000045327.7 ENSMUSG00000045327 ENSMUST00000159536 6330549D23Rik transcribed_processed_pseudogene Interval_139778 chr6 108621024 108624187 + 0 NA intron (ENSMUSG00000087341.4, intron 1 of 6) antisense-intron (ENSMUSG00000087341.4, intron 1 of 6) -8610 ENSMUSG00000087341.4 ENSMUSG00000087341 ENSMUST00000204759 0610040F04Rik antisense Interval_120413 chr4 148447943 148449123 + 0 NA promoter-TSS (ENSMUSG00000028991.15) protein_coding-promoter-TSS (ENSMUSG00000028991.15) -3772 ENSMUSG00000047719.2 ENSMUSG00000047719 ENSMUST00000156686 Ubiad1 protein_coding Interval_160426 chr8 109434578 109434939 + 0 NA Intergenic Intergenic -9014 ENSMUSG00000092821.1 ENSMUSG00000092821 ENSMUST00000175080 Gm23163 miRNA Interval_16880 chr10 69439233 69439665 + 0 NA intron (ENSMUSG00000069601.14, intron 1 of 1) protein_coding-intron (ENSMUSG00000069601.14, intron 1 of 1) -15701 ENSMUSG00000111899.1 ENSMUSG00000111899 ENSMUST00000218846 Gm18636 processed_pseudogene Interval_44332 chr13 43765497 43766042 + 0 NA Intergenic Intergenic -19416 ENSMUSG00000015396.4 ENSMUSG00000015396 ENSMUST00000221359 Cd83 protein_coding Interval_105908 chr3 90009407 90009783 + 0 NA TTS (ENSMUSG00000077569.1) snoRNA-TTS (ENSMUSG00000077569.1) 1135 ENSMUSG00000077569.1 ENSMUSG00000077569 ENSMUST00000104381 Gm24608 snoRNA Interval_77982 chr18 6408657 6411471 + 0 NA Intergenic Intergenic 31830 ENSMUSG00000024240.13 ENSMUSG00000024240 ENSMUST00000050542 Epc1 protein_coding Interval_106082 chr3 92705313 92706130 + 0 NA Intergenic Intergenic 3353 ENSMUSG00000068889.1 ENSMUSG00000068889 ENSMUST00000090867 Lce1e protein_coding Interval_27161 chr11 63543966 63544444 + 0 NA Intergenic Intergenic 56718 ENSMUSG00000082256.1 ENSMUSG00000082256 ENSMUST00000119770 Gm12287 processed_pseudogene Interval_95848 chr2 117237358 117237755 + 0 NA Intergenic Intergenic -3327 ENSMUSG00000081842.1 ENSMUSG00000081842 ENSMUST00000118467 Rap1a-ps2 processed_pseudogene Interval_140327 chr6 116606997 116607927 + 0 NA Intergenic Intergenic 15062 ENSMUSG00000108138.1 ENSMUSG00000108138 ENSMUST00000203788 Gm18485 processed_pseudogene Interval_27242 chr11 64677762 64678053 + 0 NA Intergenic Intergenic 82120 ENSMUSG00000081756.1 ENSMUSG00000081756 ENSMUST00000121627 Gm12291 processed_pseudogene Interval_112446 chr4 41326597 41327082 + 0 NA Intergenic Intergenic -11950 ENSMUSG00000028436.8 ENSMUSG00000028436 ENSMUST00000030145 Dcaf12 protein_coding Interval_81984 chr18 66835537 66835882 + 0 NA Intergenic Intergenic 24797 ENSMUSG00000047259.3 ENSMUSG00000047259 ENSMUST00000057942 Mc4r protein_coding Interval_95360 chr2 106920116 106920844 + 0 NA Intergenic Intergenic 3709 ENSMUSG00000085530.1 ENSMUSG00000085530 ENSMUST00000137252 Gm13901 processed_pseudogene Interval_17134 chr10 71884942 71885856 + 0 NA Intergenic Intergenic -12637 ENSMUSG00000077142.1 ENSMUSG00000077142 ENSMUST00000103954 Gm22937 snoRNA Interval_104427 chr3 65556170 65556718 + 0 NA TTS (ENSMUSG00000034640.9) protein_coding-TTS (ENSMUSG00000034640.9) 10404 ENSMUSG00000034640.9 ENSMUSG00000034640 ENSMUST00000154094 Tiparp protein_coding Interval_128595 chr5 114213201 114213481 + 0 NA exon (ENSMUSG00000042010.16, exon 22 of 52) protein_coding-exon (ENSMUSG00000042010.16, exon 22 of 52) 24584 ENSMUSG00000084243.1 ENSMUSG00000084243 ENSMUST00000119639 Gm13784 processed_pseudogene Interval_85175 chr19 23388374 23388984 + 0 NA intron (ENSMUSG00000033207.7, intron 2 of 12) protein_coding-intron (ENSMUSG00000033207.7, intron 2 of 13) -29664 ENSMUSG00000118092.1 ENSMUSG00000118092 ENSMUST00000235597 Gm50445 lincRNA Interval_78391 chr18 12441700 12441936 + 0 NA intron (ENSMUSG00000024421.16, intron 14 of 74) protein_coding-intron (ENSMUSG00000024421.16, intron 14 of 74) 57644 ENSMUSG00000100090.1 ENSMUSG00000100090 ENSMUST00000187766 Gm29199 processed_pseudogene Interval_103191 chr3 36507109 36507432 + 0 NA promoter-TSS (ENSMUSG00000085320.1) lincRNA-promoter-TSS (ENSMUSG00000085320.1) -461 ENSMUSG00000085320.1 ENSMUSG00000085320 ENSMUST00000140203 Gm11548 lincRNA Interval_116782 chr4 117270004 117270846 + 0 NA Intergenic Intergenic 3358 ENSMUSG00000028677.19 ENSMUSG00000028677 ENSMUST00000123222 Rnf220 protein_coding Interval_93735 chr2 76332374 76333601 + 0 NA intron (ENSMUSG00000075270.11, intron 1 of 19) protein_coding-intron (ENSMUSG00000075270.11, intron 1 of 19) 14505 ENSMUSG00000105164.1 ENSMUSG00000105164 ENSMUST00000196553 Gm44337 miRNA Interval_134206 chr6 22853801 22854004 + 0 NA Intergenic Intergenic -21820 ENSMUSG00000068748.7 ENSMUSG00000068748 ENSMUST00000200769 Ptprz1 protein_coding Interval_107450 chr3 107787021 107787839 + 0 NA Intergenic Intergenic 5574 ENSMUSG00000106531.1 ENSMUSG00000106531 ENSMUST00000200491 Gm43233 processed_pseudogene Interval_167936 chr9 74752626 74752880 + 0 NA Intergenic Intergenic -29317 ENSMUSG00000088635.1 ENSMUSG00000088635 ENSMUST00000158010 Gm22315 snoRNA Interval_158635 chr8 84893174 84894203 + 0 NA promoter-TSS (ENSMUSG00000003809.14) protein_coding-promoter-TSS (ENSMUSG00000003809.14) 233 ENSMUSG00000003809.14 ENSMUSG00000003809 ENSMUST00000142748 Gcdh protein_coding Interval_137705 chr6 80786479 80786811 + 0 NA intron (ENSMUSG00000052581.13, intron 2 of 2) protein_coding-intron (ENSMUSG00000052581.13, intron 3 of 3) -40493 ENSMUSG00000108040.1 ENSMUSG00000108040 ENSMUST00000204868 Gm43900 TEC Interval_159542 chr8 95341998 95342381 + 0 NA intron (ENSMUSG00000031792.15, intron 3 of 4) protein_coding-intron (ENSMUSG00000031792.15, intron 3 of 6) 9886 ENSMUSG00000031792.15 ENSMUSG00000031792 ENSMUST00000151223 Usb1 protein_coding Interval_1887 chr1 34302048 34303056 + 0 NA intron (ENSMUSG00000026131.20, intron 99 of 102) protein_coding-intron (ENSMUSG00000026131.20, intron 95 of 97) 27755 ENSMUSG00000104397.1 ENSMUSG00000104397 ENSMUST00000193131 Gm37958 lincRNA Interval_128199 chr5 111652086 111652370 + 0 NA Intergenic Intergenic 58612 ENSMUSG00000104833.1 ENSMUSG00000104833 ENSMUST00000198964 Gm42489 lincRNA Interval_78810 chr18 20745427 20746714 + 0 NA exon (ENSMUSG00000056124.5, exon 1 of 9) protein_coding-exon (ENSMUSG00000056124.5, exon 1 of 9) 334 ENSMUSG00000056124.5 ENSMUSG00000056124 ENSMUST00000070080 B4galt6 protein_coding Interval_120981 chr4 152042999 152043817 + 0 NA intron (ENSMUSG00000028948.16, intron 3 of 5) protein_coding-intron (ENSMUSG00000028948.16, intron 3 of 11) 4087 ENSMUSG00000028948.16 ENSMUSG00000028948 ENSMUST00000131696 Nol9 protein_coding Interval_8615 chr1 143883061 143883274 + 0 NA Intergenic Intergenic 88492 ENSMUSG00000018189.12 ENSMUSG00000018189 ENSMUST00000185539 Uchl5 protein_coding Interval_16193 chr10 61350950 61351814 + 0 NA intron (ENSMUSG00000020092.9, intron 3 of 3) protein_coding-intron (ENSMUSG00000020092.9, intron 3 of 19) -8284 ENSMUSG00000112256.1 ENSMUSG00000112256 ENSMUST00000219025 Gm48077 TEC Interval_110916 chr4 10150448 10150733 + 0 NA Intergenic Intergenic 191236 ENSMUSG00000082501.1 ENSMUSG00000082501 ENSMUST00000120635 Gm11835 processed_pseudogene Interval_44129 chr13 41084749 41085380 + 0 NA Intergenic Intergenic -6366 ENSMUSG00000114385.1 ENSMUSG00000114385 ENSMUST00000225870 Gm48344 processed_pseudogene Interval_72605 chr17 30984516 30984843 + 0 NA intron (ENSMUSG00000054134.14, intron 9 of 22) protein_coding-intron (ENSMUSG00000054134.14, intron 9 of 22) -14674 ENSMUSG00000118169.1 ENSMUSG00000118169 ENSMUST00000236274 Gm50249 antisense Interval_10719 chr1 173445184 173445410 + 0 NA intron (ENSMUSG00000037860.15, intron 2 of 5) protein_coding-intron (ENSMUSG00000037860.15, intron 5 of 11) -10057 ENSMUSG00000037860.15 ENSMUSG00000037860 ENSMUST00000135370 Aim2 protein_coding Interval_135413 chr6 39218508 39218911 + 0 NA Intergenic Intergenic 11641 ENSMUSG00000115026.1 ENSMUSG00000115026 ENSMUST00000227758 Gm49041 bidirectional_promoter_lncRNA Interval_126359 chr5 87087278 87087464 + 0 NA intron (ENSMUSG00000070704.10, intron 2 of 4) protein_coding-intron (ENSMUSG00000070704.10, intron 3 of 5) 3786 ENSMUSG00000070704.10 ENSMUSG00000070704 ENSMUST00000132667 Ugt2b36 protein_coding Interval_67376 chr16 48216915 48217117 + 0 NA Intergenic Intergenic -1589 ENSMUSG00000048164.9 ENSMUSG00000048164 ENSMUST00000062591 Gm7204 processed_pseudogene Interval_25134 chr11 44445159 44446178 + 0 NA Intergenic Intergenic 15685 ENSMUSG00000041231.15 ENSMUSG00000041231 ENSMUST00000150032 Ublcp1 protein_coding Interval_38843 chr12 83303448 83303649 + 0 NA intron (ENSMUSG00000021221.15, intron 6 of 10) protein_coding-intron (ENSMUSG00000021221.15, intron 4 of 6) 181334 ENSMUSG00000103387.1 ENSMUSG00000103387 ENSMUST00000192978 1700030I03Rik TEC Interval_93770 chr2 76746419 76747342 + 0 NA exon (ENSMUSG00000051747.15, exon 154 of 191) protein_coding-exon (ENSMUSG00000051747.15, exon 154 of 191) 24104 ENSMUSG00000086354.2 ENSMUSG00000086354 ENSMUST00000156809 Gm13938 antisense Interval_89461 chr2 20779489 20780250 + 0 NA intron (ENSMUSG00000036617.17, intron 5 of 7) protein_coding-intron (ENSMUSG00000036617.17, intron 10 of 18) -66635 ENSMUSG00000086418.1 ENSMUSG00000086418 ENSMUST00000137186 Gm13362 antisense Interval_37343 chr12 65249906 65250105 + 0 NA Intergenic Intergenic -1705 ENSMUSG00000113442.1 ENSMUSG00000113442 ENSMUST00000222221 Gm47973 processed_pseudogene Interval_51092 chr14 22573697 22574509 + 0 NA intron (ENSMUSG00000063458.13, intron 2 of 3) protein_coding-intron (ENSMUSG00000063458.13, intron 2 of 6) -15650 ENSMUSG00000059827.5 ENSMUSG00000059827 ENSMUST00000093546 Gm5670 processed_pseudogene Interval_164362 chr9 35886374 35887753 + 0 NA Intergenic Intergenic -21379 ENSMUSG00000078934.4 ENSMUSG00000078934 ENSMUST00000176153 Pate13 protein_coding Interval_151975 chr7 127912126 127913068 + 0 NA promoter-TSS (ENSMUSG00000030801.10) protein_coding-promoter-TSS (ENSMUSG00000030801.10) -7191 ENSMUSG00000030801.10 ENSMUSG00000030801 ENSMUST00000206364 Kat8 protein_coding Interval_19132 chr10 94942723 94945669 + 0 NA exon (ENSMUSG00000074785.5, exon 1 of 31) protein_coding-exon (ENSMUSG00000074785.5, exon 1 of 31) -4394 ENSMUSG00000089146.1 ENSMUSG00000089146 ENSMUST00000158521 Gm25266 misc_RNA Interval_125865 chr5 75148383 75149056 + 0 NA Intergenic Intergenic 4934 ENSMUSG00000106760.1 ENSMUSG00000106760 ENSMUST00000202475 Gm42802 antisense Interval_58262 chr15 31461205 31461537 + 0 NA promoter-TSS (ENSMUSG00000115357.1) processed_pseudogene-promoter-TSS (ENSMUSG00000115357.1) -910 ENSMUSG00000115357.1 ENSMUSG00000115357 ENSMUST00000227135 Gm49214 processed_pseudogene Interval_16000 chr10 60022768 60023776 + 0 NA intron (ENSMUSG00000044475.14, intron 5 of 10) protein_coding-intron (ENSMUSG00000044475.14, intron 5 of 10) 20467 ENSMUSG00000044475.14 ENSMUSG00000044475 ENSMUST00000164083 Ascc1 protein_coding Interval_79985 chr18 36438974 36442000 + 0 NA intron (ENSMUSG00000024346.6, intron 1 of 2) protein_coding-intron (ENSMUSG00000024346.6, intron 2 of 3) 14037 ENSMUSG00000024346.6 ENSMUSG00000024346 ENSMUST00000237499 Pfdn1 protein_coding Interval_150878 chr7 116134507 116135216 + 0 NA TTS (ENSMUSG00000045659.18) protein_coding-TTS (ENSMUSG00000045659.18) -5336 ENSMUSG00000045659.18 ENSMUSG00000045659 ENSMUST00000205446 Plekha7 protein_coding Interval_45260 chr13 53602983 53603957 + 0 NA Intergenic Intergenic 35723 ENSMUSG00000113599.1 ENSMUSG00000113599 ENSMUST00000221882 9530014B07Rik lincRNA Interval_116885 chr4 117972896 117973505 + 0 NA intron (ENSMUSG00000028538.12, intron 2 of 7) protein_coding-intron (ENSMUSG00000028538.12, intron 5 of 11) -1836 ENSMUSG00000086554.1 ENSMUSG00000086554 ENSMUST00000146982 9530034E10Rik antisense Interval_108639 chr3 129698710 129699031 + 0 NA TTS (ENSMUSG00000028017.7) protein_coding-TTS (ENSMUSG00000028017.7) -14629 ENSMUSG00000092701.1 ENSMUSG00000092701 ENSMUST00000174960 Gm24515 miRNA Interval_115194 chr4 94187145 94187393 + 0 NA intron (ENSMUSG00000085931.1, intron 2 of 5) lincRNA-intron (ENSMUSG00000085931.1, intron 2 of 5) 88979 ENSMUSG00000077622.1 ENSMUSG00000077622 ENSMUST00000104434 Gm23836 snoRNA Interval_29627 chr11 85577596 85578553 + 0 NA intron (ENSMUSG00000059439.15, intron 11 of 14) protein_coding-intron (ENSMUSG00000059439.15, intron 21 of 24) 84315 ENSMUSG00000087779.1 ENSMUSG00000087779 ENSMUST00000157154 Gm23765 snRNA Interval_171469 chr9 118581049 118581956 + 0 NA intron (ENSMUSG00000038708.10, intron 10 of 10) protein_coding-intron (ENSMUSG00000038708.10, intron 23 of 23) 8693 ENSMUSG00000110676.1 ENSMUSG00000110676 ENSMUST00000212679 Gm45897 lincRNA Interval_151875 chr7 127243863 127245166 + 0 NA promoter-TSS (ENSMUSG00000054716.4) protein_coding-promoter-TSS (ENSMUSG00000054716.4) -673 ENSMUSG00000054716.4 ENSMUSG00000054716 ENSMUST00000205583 Zfp771 protein_coding Interval_172097 chrX 7444505 7444866 + 0 NA intron (ENSMUSG00000063018.6, intron 1 of 3) processed_transcript-intron (ENSMUSG00000063018.6, intron 1 of 3) -23600 ENSMUSG00000063018.6 ENSMUSG00000063018 ENSMUST00000150671 2010204K13Rik processed_transcript Interval_36521 chr12 48230924 48231215 + 0 NA Intergenic Intergenic -183535 ENSMUSG00000111984.1 ENSMUSG00000111984 ENSMUST00000218240 Gm46327 unprocessed_pseudogene Interval_173143 chrX 73433882 73434364 + 0 NA exon (ENSMUSG00000031372.7, exon 2 of 2) protein_coding-exon (ENSMUSG00000031372.7, exon 2 of 2) 1221 ENSMUSG00000031372.7 ENSMUSG00000031372 ENSMUST00000033738 Trex2 protein_coding Interval_53910 chr14 63338132 63339606 + 0 NA intron (ENSMUSG00000114892.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000114892.1, intron 1 of 1) 9649 ENSMUSG00000114892.1 ENSMUSG00000114892 ENSMUST00000226066 Gm5463 lincRNA Interval_76932 chr17 85023297 85025401 + 0 NA TTS (ENSMUSG00000061130.13) protein_coding-TTS (ENSMUSG00000061130.13) -4027 ENSMUSG00000024131.8 ENSMUSG00000024131 ENSMUST00000024944 Slc3a1 protein_coding Interval_53087 chr14 54382865 54384084 + 0 NA intron (ENSMUSG00000000958.10, intron 2 of 2) protein_coding-intron (ENSMUSG00000000958.10, intron 2 of 9) 15843 ENSMUSG00000000959.7 ENSMUSG00000000959 ENSMUST00000228719 Oxa1l protein_coding Interval_18297 chr10 84675685 84676083 + 0 NA intron (ENSMUSG00000034453.8, intron 15 of 27) protein_coding-intron (ENSMUSG00000034453.8, intron 15 of 27) 37750 ENSMUSG00000034453.8 ENSMUSG00000034453 ENSMUST00000213543 Polr3b protein_coding Interval_53779 chr14 61688656 61690248 + 0 NA Intergenic Intergenic 5942 ENSMUSG00000104187.1 ENSMUSG00000104187 ENSMUST00000194021 Gm37820 TEC Interval_51782 chr14 32179277 32180707 + 0 NA TTS (ENSMUSG00000013701.13) protein_coding-TTS (ENSMUSG00000013701.13) 3260 ENSMUSG00000056234.15 ENSMUSG00000056234 ENSMUST00000228779 Ncoa4 protein_coding Interval_24573 chr11 34731379 34732072 + 0 NA intron (ENSMUSG00000020143.15, intron 4 of 26) protein_coding-intron (ENSMUSG00000020143.15, intron 4 of 51) 92226 ENSMUSG00000069910.2 ENSMUSG00000069910 ENSMUST00000148387 Spdl1 protein_coding Interval_82311 chr18 70551116 70551358 + 0 NA Intergenic Intergenic 34451 ENSMUSG00000098721.1 ENSMUSG00000098721 ENSMUST00000184246 Mir6357 miRNA Interval_116868 chr4 117834833 117836933 + 0 NA intron (ENSMUSG00000028542.17, intron 1 of 11) protein_coding-intron (ENSMUSG00000028542.17, intron 1 of 13) -10227 ENSMUSG00000083507.1 ENSMUSG00000083507 ENSMUST00000117298 Gm12842 processed_pseudogene Interval_160957 chr8 116368888 116369328 + 0 NA Intergenic Intergenic 12047 ENSMUSG00000110709.1 ENSMUSG00000110709 ENSMUST00000212522 1700018P08Rik lincRNA Interval_89327 chr2 19373727 19373929 + 0 NA intron (ENSMUSG00000023094.14, intron 1 of 4) protein_coding-intron (ENSMUSG00000023094.14, intron 1 of 4) 1987 ENSMUSG00000023094.14 ENSMUSG00000023094 ENSMUST00000153289 Msrb2 protein_coding Interval_48224 chr13 97290829 97292686 + 0 NA Intergenic Intergenic 8574 ENSMUSG00000097932.2 ENSMUSG00000097932 ENSMUST00000181148 C430039J16Rik lincRNA Interval_125286 chr5 65955017 65956229 + 0 NA intron (ENSMUSG00000029205.12, intron 2 of 3) protein_coding-intron (ENSMUSG00000029205.12, intron 1 of 3) 4318 ENSMUSG00000106768.1 ENSMUSG00000106768 ENSMUST00000200913 4930480C01Rik TEC Interval_164513 chr9 37612797 37614282 + 0 NA promoter-TSS (ENSMUSG00000001948.10) protein_coding-promoter-TSS (ENSMUSG00000001948.10) 183 ENSMUSG00000001948.10 ENSMUSG00000001948 ENSMUST00000215336 Spa17 protein_coding Interval_82701 chr18 76058640 76060771 + 0 NA intron (ENSMUSG00000044646.15, intron 1 of 2) protein_coding-intron (ENSMUSG00000044646.15, intron 3 of 4) 38766 ENSMUSG00000117797.1 ENSMUSG00000117797 ENSMUST00000236092 2900057B20Rik antisense Interval_124236 chr5 41843508 41845596 + 0 NA promoter-TSS (ENSMUSG00000061755.10) protein_coding-promoter-TSS (ENSMUSG00000061755.10) -237 ENSMUSG00000061755.10 ENSMUSG00000061755 ENSMUST00000202200 Bod1l protein_coding Interval_127037 chr5 99854977 99855179 + 0 NA Intergenic Intergenic -15088 ENSMUSG00000104731.1 ENSMUSG00000104731 ENSMUST00000200464 Gm43249 processed_pseudogene Interval_56975 chr14 124490955 124491700 + 0 NA intron (ENSMUSG00000025551.13, intron 1 of 4) protein_coding-intron (ENSMUSG00000025551.13, intron 1 of 4) -40625 ENSMUSG00000115191.1 ENSMUSG00000115191 ENSMUST00000227084 Gm49071 processed_pseudogene Interval_99889 chr2 165627770 165629041 + 0 NA intron (ENSMUSG00000017897.18, intron 1 of 15) protein_coding-intron (ENSMUSG00000017897.18, intron 1 of 15) -26618 ENSMUSG00000100796.1 ENSMUSG00000100796 ENSMUST00000187099 Gm28163 lincRNA Interval_109047 chr3 135450132 135450355 + 0 NA exon (ENSMUSG00000078578.9, exon 1 of 1) protein_coding-exon (ENSMUSG00000078578.9, exon 1 of 1) -11578 ENSMUSG00000097032.2 ENSMUSG00000097032 ENSMUST00000181619 4930539J05Rik antisense Interval_104907 chr3 78942043 78943554 + 0 NA Intergenic Intergenic 24001 ENSMUSG00000037096.6 ENSMUSG00000037096 ENSMUST00000036976 Gm9762 processed_pseudogene Interval_131221 chr5 135890450 135891252 + 0 NA Intergenic Intergenic 2833 ENSMUSG00000004951.10 ENSMUSG00000004951 ENSMUST00000111155 Hspb1 protein_coding Interval_71733 chr17 25755205 25757665 + 0 NA Intergenic Intergenic -3767 ENSMUSG00000117741.1 ENSMUSG00000117741 ENSMUST00000236363 1700080C20Rik lincRNA Interval_2618 chr1 42388276 42388547 + 0 NA Intergenic Intergenic -32474 ENSMUSG00000100180.1 ENSMUSG00000100180 ENSMUST00000190148 Gm28140 lincRNA Interval_5250 chr1 86837756 86838208 + 0 NA TTS (ENSMUSG00000104400.1) TEC-TTS (ENSMUSG00000104400.1) 2987 ENSMUSG00000104400.1 ENSMUSG00000104400 ENSMUST00000192592 Gm38010 TEC Interval_43133 chr13 24548576 24549118 + 0 NA intron (ENSMUSG00000036006.20, intron 1 of 13) protein_coding-intron (ENSMUSG00000036006.20, intron 1 of 13) 47322 ENSMUSG00000036006.20 ENSMUSG00000036006 ENSMUST00000177489 Ripor2 protein_coding Interval_5881 chr1 92912135 92912487 + 0 NA exon (ENSMUSG00000026269.14, exon 1 of 1) protein_coding-exon (ENSMUSG00000026269.14, exon 1 of 1) 1458 ENSMUSG00000026269.14 ENSMUSG00000026269 ENSMUST00000179531 Rnpepl1 protein_coding Interval_47658 chr13 90894478 90894686 + 0 NA intron (ENSMUSG00000078958.9, intron 3 of 4) protein_coding-intron (ENSMUSG00000078958.9, intron 4 of 6) 5231 ENSMUSG00000078958.9 ENSMUSG00000078958 ENSMUST00000182932 Atp6ap1l protein_coding Interval_126186 chr5 81661804 81662867 + 0 NA intron (ENSMUSG00000037605.16, intron 12 of 12) protein_coding-intron (ENSMUSG00000037605.16, intron 10 of 24) -73592 ENSMUSG00000106611.1 ENSMUSG00000106611 ENSMUST00000104721 Gm22048 miRNA Interval_34603 chr12 7537243 7538296 + 0 NA intron (ENSMUSG00000112323.1, intron 4 of 5) lincRNA-intron (ENSMUSG00000112323.1, intron 4 of 5) -119645 ENSMUSG00000112754.1 ENSMUSG00000112754 ENSMUST00000218817 Gm9139 processed_pseudogene Interval_76169 chr17 75874176 75874472 + 0 NA intron (ENSMUSG00000117539.1, intron 2 of 4) lincRNA-intron (ENSMUSG00000117539.1, intron 2 of 4) 13301 ENSMUSG00000117539.1 ENSMUSG00000117539 ENSMUST00000234389 Gm4710 lincRNA Interval_26014 chr11 53485840 53487917 + 0 NA Intergenic Intergenic -6604 ENSMUSG00000044352.6 ENSMUSG00000044352 ENSMUST00000104955 Sowaha protein_coding Interval_136100 chr6 50951013 50951456 + 0 NA Intergenic Intergenic -16034 ENSMUSG00000108153.1 ENSMUSG00000108153 ENSMUST00000203677 Gm44402 processed_pseudogene Interval_55929 chr14 102855396 102856159 + 0 NA Intergenic Intergenic -21019 ENSMUSG00000115816.1 ENSMUSG00000115816 ENSMUST00000227101 Gm34589 processed_transcript Interval_129861 chr5 122782083 122782551 + 0 NA exon (ENSMUSG00000105613.1, exon 1 of 1) TEC-exon (ENSMUSG00000105613.1, exon 1 of 1) 2792 ENSMUSG00000105613.1 ENSMUSG00000105613 ENSMUST00000199279 Gm43684 TEC Interval_118889 chr4 134278798 134279259 + 0 NA TTS (ENSMUSG00000050890.15) protein_coding-TTS (ENSMUSG00000050890.15) 8197 ENSMUSG00000050890.15 ENSMUSG00000050890 ENSMUST00000142504 Pdik1l protein_coding Interval_59411 chr15 52587911 52588151 + 0 NA Intergenic Intergenic 88375 ENSMUSG00000094481.1 ENSMUSG00000094481 ENSMUST00000178490 Gm23267 snoRNA Interval_58707 chr15 37243301 37243953 + 0 NA promoter-TSS (ENSMUSG00000089949.2) antisense-promoter-TSS (ENSMUSG00000089949.2) -465 ENSMUSG00000089949.2 ENSMUSG00000089949 ENSMUST00000161571 Gm16137 antisense Interval_107459 chr3 107853191 107853638 + 0 NA Intergenic Intergenic 15229 ENSMUSG00000105944.1 ENSMUSG00000105944 ENSMUST00000196916 Gm5075 processed_pseudogene Interval_167717 chr9 72260211 72260901 + 0 NA Intergenic Intergenic -3417 ENSMUSG00000089530.1 ENSMUSG00000089530 ENSMUST00000158905 Gm25163 snRNA Interval_124630 chr5 52581495 52581721 + 0 NA promoter-TSS (ENSMUSG00000095078.2) processed_pseudogene-promoter-TSS (ENSMUSG00000095078.2) -466 ENSMUSG00000095078.2 ENSMUSG00000095078 ENSMUST00000177881 Gm5866 processed_pseudogene Interval_50204 chr14 9669803 9670234 + 0 NA intron (ENSMUSG00000060579.13, intron 4 of 5) protein_coding-intron (ENSMUSG00000060579.13, intron 8 of 9) -193084 ENSMUSG00000089795.1 ENSMUSG00000089795 ENSMUST00000162465 Hmgb3-ps processed_pseudogene Interval_160268 chr8 107572368 107572929 + 0 NA Intergenic Intergenic 15810 ENSMUSG00000039067.5 ENSMUSG00000039067 ENSMUST00000213080 Psmd7 protein_coding Interval_139412 chr6 99945632 99947215 + 0 NA intron (ENSMUSG00000107528.1, intron 2 of 2) lincRNA-intron (ENSMUSG00000107528.1, intron 2 of 2) -14874 ENSMUSG00000107528.1 ENSMUSG00000107528 ENSMUST00000204919 Gm44442 lincRNA Interval_47966 chr13 94709731 94711072 + 0 NA Intergenic Intergenic -7683 ENSMUSG00000113904.1 ENSMUSG00000113904 ENSMUST00000220503 Gm32351 lincRNA Interval_163477 chr9 21625285 21625482 + 0 NA intron (ENSMUSG00000032187.16, intron 1 of 33) protein_coding-intron (ENSMUSG00000032187.16, intron 1 of 33) 9119 ENSMUSG00000032187.16 ENSMUSG00000032187 ENSMUST00000172996 Smarca4 protein_coding Interval_75823 chr17 71652336 71653318 + 0 NA TTS (ENSMUSG00000041057.10) protein_coding-TTS (ENSMUSG00000041057.10) 10131 ENSMUSG00000041057.10 ENSMUSG00000041057 ENSMUST00000234339 Wdr43 protein_coding Interval_161914 chr8 123729195 123730329 + 0 NA intron (ENSMUSG00000110467.1, intron 1 of 1) protein_coding-intron (ENSMUSG00000092329.1, intron 1 of 15) -4196 ENSMUSG00000110599.1 ENSMUSG00000110599 ENSMUST00000212339 6030466F02Rik lincRNA Interval_136801 chr6 60503483 60503870 + 0 NA Intergenic Intergenic 13720 ENSMUSG00000108192.1 ENSMUSG00000108192 ENSMUST00000203151 Gm44410 lincRNA Interval_142981 chr6 147998954 147999520 + 0 NA Intergenic Intergenic 48102 ENSMUSG00000086777.3 ENSMUSG00000086777 ENSMUST00000149815 Far2os2 antisense Interval_42094 chr13 8645288 8647334 + 0 NA intron (ENSMUSG00000052551.16, intron 3 of 10) protein_coding-intron (ENSMUSG00000052551.16, intron 3 of 9) 93291 ENSMUSG00000113742.1 ENSMUSG00000113742 ENSMUST00000220604 Gm48262 TEC Interval_50988 chr14 21515290 21516113 + 0 NA intron (ENSMUSG00000021767.19, intron 1 of 1) protein_coding-intron (ENSMUSG00000021767.19, intron 1 of 16) -1174 ENSMUSG00000021767.19 ENSMUSG00000021767 ENSMUST00000226589 Kat6b protein_coding Interval_107304 chr3 105667506 105667706 + 0 NA TTS (ENSMUSG00000040896.16) protein_coding-TTS (ENSMUSG00000040896.16) -1399 ENSMUSG00000040896.16 ENSMUSG00000040896 ENSMUST00000147209 Kcnd3 protein_coding Interval_124406 chr5 45588095 45588494 + 0 NA intron (ENSMUSG00000015879.8, intron 1 of 15) protein_coding-intron (ENSMUSG00000015879.8, intron 1 of 15) 31614 ENSMUSG00000104837.1 ENSMUSG00000104837 ENSMUST00000199642 Gm42520 TEC Interval_3423 chr1 58202558 58202797 + 0 NA Intergenic Intergenic -8541 ENSMUSG00000038242.12 ENSMUSG00000038242 ENSMUST00000161926 Aox4 protein_coding Interval_105351 chr3 85365593 85366170 + 0 NA intron (ENSMUSG00000102805.5, intron 3 of 9) protein_coding-intron (ENSMUSG00000102805.5, intron 3 of 9) 48362 ENSMUSG00000099995.1 ENSMUSG00000099995 ENSMUST00000189046 1700036G14Rik antisense Interval_23799 chr11 26386818 26387932 + 0 NA intron (ENSMUSG00000004018.9, intron 1 of 3) protein_coding-intron (ENSMUSG00000004018.9, intron 1 of 13) 173 ENSMUSG00000004018.9 ENSMUSG00000004018 ENSMUST00000134445 Fancl protein_coding Interval_109676 chr3 145940103 145940322 + 0 NA intron (ENSMUSG00000036873.13, intron 3 of 3) protein_coding-intron (ENSMUSG00000036873.13, intron 2 of 2) 1927 ENSMUSG00000036873.13 ENSMUSG00000036873 ENSMUST00000188034 2410004B18Rik protein_coding Interval_15780 chr10 56430611 56432587 + 0 NA promoter-TSS (ENSMUSG00000112833.1) lincRNA-promoter-TSS (ENSMUSG00000112833.1) -382 ENSMUSG00000112833.1 ENSMUSG00000112833 ENSMUST00000218830 Gm36595 lincRNA Interval_101135 chr2 178303691 178303899 + 0 NA intron (ENSMUSG00000027525.18, intron 8 of 12) protein_coding-intron (ENSMUSG00000027525.18, intron 8 of 12) -23761 ENSMUSG00000027525.18 ENSMUSG00000027525 ENSMUST00000133267 Phactr3 protein_coding Interval_67876 chr16 58514136 58514849 + 0 NA promoter-TSS (ENSMUSG00000022747.17) protein_coding-promoter-TSS (ENSMUSG00000022747.17) -308 ENSMUSG00000022747.17 ENSMUSG00000022747 ENSMUST00000232391 St3gal6 protein_coding Interval_85125 chr19 23041557 23042782 + 0 NA intron (ENSMUSG00000097930.2, intron 6 of 6) lincRNA-intron (ENSMUSG00000097930.2, intron 6 of 6) -19285 ENSMUSG00000118155.1 ENSMUSG00000118155 ENSMUST00000235686 Gm50136 lincRNA Interval_53534 chr14 58586497 58587648 + 0 NA Intergenic Intergenic 63328 ENSMUSG00000077201.1 ENSMUSG00000077201 ENSMUST00000104013 Gm25614 snoRNA Interval_166087 chr9 56522132 56523551 + 0 NA Intergenic Intergenic -16180 ENSMUSG00000111343.1 ENSMUSG00000111343 ENSMUST00000216940 Gm47175 TEC Interval_168263 chr9 78306704 78307371 + 0 NA Intergenic Intergenic 6964 ENSMUSG00000066463.13 ENSMUSG00000066463 ENSMUST00000085308 Omt2a protein_coding Interval_91034 chr2 34593857 34594907 + 0 NA intron (ENSMUSG00000038696.14, intron 9 of 11) protein_coding-intron (ENSMUSG00000038696.14, intron 8 of 10) 29383 ENSMUSG00000081992.1 ENSMUSG00000081992 ENSMUST00000119822 Gm13408 processed_pseudogene Interval_423 chr1 5136724 5137427 + 0 NA intron (ENSMUSG00000033793.12, intron 10 of 10) protein_coding-intron (ENSMUSG00000033793.12, intron 11 of 13) 53943 ENSMUSG00000033793.12 ENSMUSG00000033793 ENSMUST00000192142 Atp6v1h protein_coding Interval_166468 chr9 59743954 59744189 + 0 NA intron (ENSMUSG00000051705.13, intron 1 of 2) protein_coding-intron (ENSMUSG00000051705.13, intron 1 of 1) 6567 ENSMUSG00000051705.13 ENSMUSG00000051705 ENSMUST00000216045 Senp8 protein_coding Interval_94449 chr2 91303215 91303577 + 0 NA intron (ENSMUSG00000040591.18, intron 4 of 8) protein_coding-intron (ENSMUSG00000040591.18, intron 4 of 8) 38062 ENSMUSG00000027255.14 ENSMUSG00000027255 ENSMUST00000127895 Arfgap2 protein_coding Interval_59433 chr15 53124617 53125262 + 0 NA intron (ENSMUSG00000061731.9, intron 1 of 10) protein_coding-intron (ENSMUSG00000061731.9, intron 1 of 10) -17071 ENSMUSG00000061731.9 ENSMUSG00000061731 ENSMUST00000140798 Ext1 protein_coding Interval_67607 chr16 52229045 52229963 + 0 NA Intergenic Intergenic 76978 ENSMUSG00000022637.11 ENSMUSG00000022637 ENSMUST00000228247 Cblb protein_coding Interval_122540 chr5 23674876 23676730 + 0 NA promoter-TSS (ENSMUSG00000105565.1) sense_intronic-promoter-TSS (ENSMUSG00000105565.1) -257 ENSMUSG00000105565.1 ENSMUSG00000105565 ENSMUST00000196851 Gm43566 sense_intronic Interval_37980 chr12 73562695 73563241 + 0 NA Intergenic Intergenic 14490 ENSMUSG00000113800.1 ENSMUSG00000113800 ENSMUST00000222490 2210039B01Rik lincRNA Interval_91735 chr2 48917562 48918123 + 0 NA intron (ENSMUSG00000026761.12, intron 8 of 13) protein_coding-intron (ENSMUSG00000026761.12, intron 8 of 13) -7829 ENSMUSG00000026761.12 ENSMUSG00000026761 ENSMUST00000123271 Orc4 protein_coding Interval_65108 chr16 19458915 19459673 + 0 NA Intergenic Intergenic -24400 ENSMUSG00000056822.4 ENSMUSG00000056822 ENSMUST00000074739 Olfr166 protein_coding Interval_1793 chr1 33807268 33807800 + 0 NA intron (ENSMUSG00000042197.13, intron 2 of 7) protein_coding-intron (ENSMUSG00000042197.13, intron 2 of 14) 6892 ENSMUSG00000042197.13 ENSMUSG00000042197 ENSMUST00000125723 Zfp451 protein_coding Interval_21949 chr11 5391054 5392684 + 0 NA intron (ENSMUSG00000041961.14, intron 1 of 3) protein_coding-intron (ENSMUSG00000041961.14, intron 1 of 8) -10129 ENSMUSG00000041961.14 ENSMUSG00000041961 ENSMUST00000143746 Znrf3 protein_coding Interval_29462 chr11 84131919 84132126 + 0 NA exon (ENSMUSG00000020532.18, exon 1 of 1) protein_coding-exon (ENSMUSG00000020532.18, exon 1 of 1) 2322 ENSMUSG00000020532.18 ENSMUSG00000020532 ENSMUST00000183887 Acaca protein_coding Interval_155198 chr8 27393254 27393647 + 0 NA intron (ENSMUSG00000031492.13, intron 4 of 4) protein_coding-intron (ENSMUSG00000031492.13, intron 4 of 5) 20494 ENSMUSG00000031491.10 ENSMUSG00000031491 ENSMUST00000033882 Chrna6 protein_coding Interval_148661 chr7 83939450 83939649 + 0 NA intron (ENSMUSG00000052353.13, intron 3 of 4) protein_coding-intron (ENSMUSG00000052353.13, intron 27 of 28) 44496 ENSMUSG00000038503.15 ENSMUSG00000038503 ENSMUST00000207373 Mesd protein_coding Interval_104227 chr3 61188613 61189022 + 0 NA Intergenic Intergenic 102629 ENSMUSG00000102242.1 ENSMUSG00000102242 ENSMUST00000194615 Gm37719 processed_pseudogene Interval_62283 chr15 89442424 89443362 + 0 NA Intergenic Intergenic -12149 ENSMUSG00000022619.5 ENSMUSG00000022619 ENSMUST00000137755 Mapk8ip2 protein_coding Interval_156533 chr8 49947221 49947473 + 0 NA exon (ENSMUSG00000109907.1, exon 6 of 6) lincRNA-exon (ENSMUSG00000109907.1, exon 6 of 6) -42560 ENSMUSG00000110147.1 ENSMUSG00000110147 ENSMUST00000211193 Gm45324 TEC Interval_36456 chr12 45080429 45080774 + 0 NA Intergenic Intergenic -6375 ENSMUSG00000046314.16 ENSMUSG00000046314 ENSMUST00000218249 Stxbp6 protein_coding Interval_26409 chr11 57696974 57697670 + 0 NA intron (ENSMUSG00000020520.14, intron 1 of 2) protein_coding-intron (ENSMUSG00000020520.14, intron 1 of 11) -39496 ENSMUSG00000086933.1 ENSMUSG00000086933 ENSMUST00000143009 4933426K07Rik antisense Interval_119187 chr4 136083114 136085128 + 0 NA Intergenic Intergenic -9149 ENSMUSG00000082877.1 ENSMUSG00000082877 ENSMUST00000121307 Gm13009 processed_pseudogene Interval_96362 chr2 121980691 121980924 + 0 NA intron (ENSMUSG00000033411.16, intron 3 of 10) protein_coding-intron (ENSMUSG00000033411.16, intron 4 of 12) 24327 ENSMUSG00000033411.16 ENSMUSG00000033411 ENSMUST00000127265 Ctdspl2 protein_coding Interval_119105 chr4 135591594 135592630 + 0 NA Intergenic Intergenic 8364 ENSMUSG00000088179.1 ENSMUSG00000088179 ENSMUST00000157554 Gm23106 snRNA Interval_98107 chr2 148114735 148114958 + 0 NA Intergenic Intergenic -36304 ENSMUSG00000089458.1 ENSMUSG00000089458 ENSMUST00000158833 Gm24221 snoRNA Interval_509 chr1 6760752 6761403 + 0 NA intron (ENSMUSG00000033740.17, intron 4 of 6) protein_coding-intron (ENSMUSG00000033740.17, intron 4 of 23) 23502 ENSMUSG00000033740.17 ENSMUSG00000033740 ENSMUST00000130338 St18 protein_coding Interval_173402 chrX 88873070 88873940 + 0 NA Intergenic Intergenic 25001 ENSMUSG00000082847.1 ENSMUSG00000082847 ENSMUST00000119203 Gm5759 processed_pseudogene Interval_145527 chr7 35372543 35374025 + 0 NA intron (ENSMUSG00000030494.13, intron 7 of 15) protein_coding-intron (ENSMUSG00000030494.13, intron 7 of 14) -9281 ENSMUSG00000030494.13 ENSMUSG00000030494 ENSMUST00000187997 Rhpn2 protein_coding Interval_174031 chrX 130556476 130557585 + 0 NA Intergenic Intergenic 4867 ENSMUSG00000083024.1 ENSMUSG00000083024 ENSMUST00000121102 Gm14982 processed_pseudogene Interval_120488 chr4 148921488 148922673 + 0 NA intron (ENSMUSG00000028977.17, intron 2 of 3) protein_coding-intron (ENSMUSG00000028977.17, intron 4 of 15) -7756 ENSMUSG00000086766.1 ENSMUSG00000086766 ENSMUST00000151967 Gm15969 antisense Interval_87587 chr19 53584935 53585279 + 0 NA Intergenic Intergenic 3961 ENSMUSG00000071497.4 ENSMUSG00000071497 ENSMUST00000095978 Nutf2-ps1 protein_coding Interval_18326 chr10 84943885 84944604 + 0 NA intron (ENSMUSG00000035620.15, intron 1 of 7) protein_coding-intron (ENSMUSG00000035620.15, intron 2 of 9) 6851 ENSMUSG00000035620.15 ENSMUSG00000035620 ENSMUST00000214820 Ric8b protein_coding Interval_148779 chr7 87095928 87096831 + 0 NA Intergenic Intergenic -22488 ENSMUSG00000109334.1 ENSMUSG00000109334 ENSMUST00000208879 Gm44925 TEC Interval_154815 chr8 23648586 23648997 + 0 NA intron (ENSMUSG00000037492.16, intron 1 of 3) protein_coding-intron (ENSMUSG00000037492.16, intron 1 of 3) -20870 ENSMUSG00000037492.16 ENSMUSG00000037492 ENSMUST00000146774 Zmat4 protein_coding Interval_58126 chr15 28187714 28188831 + 0 NA Intergenic Intergenic 3850 ENSMUSG00000115806.1 ENSMUSG00000115806 ENSMUST00000228611 Gm49234 TEC Interval_70078 chr17 5160167 5160403 + 0 NA intron (ENSMUSG00000069729.14, intron 4 of 19) protein_coding-intron (ENSMUSG00000069729.14, intron 4 of 18) -48175 ENSMUSG00000081783.2 ENSMUSG00000081783 ENSMUST00000122283 Gm15599 processed_pseudogene Interval_35153 chr12 17633104 17633957 + 0 NA Intergenic Intergenic 11675 ENSMUSG00000088939.1 ENSMUSG00000088939 ENSMUST00000158314 Gm25925 misc_RNA Interval_158428 chr8 83667821 83669103 + 0 NA exon (ENSMUSG00000057672.16, exon 22 of 22) protein_coding-exon (ENSMUSG00000057672.16, exon 22 of 22) 1320 ENSMUSG00000019464.6 ENSMUSG00000019464 ENSMUST00000212519 Ptger1 protein_coding Interval_88079 chr19 58888076 58888654 + 0 NA intron (ENSMUSG00000025092.7, intron 2 of 6) protein_coding-intron (ENSMUSG00000025092.7, intron 2 of 6) 23394 ENSMUSG00000092813.1 ENSMUSG00000092813 ENSMUST00000175072 Mir3086 miRNA Interval_45626 chr13 56339406 56340538 + 0 NA Intergenic Intergenic 2556 ENSMUSG00000088149.1 ENSMUSG00000088149 ENSMUST00000157524 Gm24716 snRNA Interval_84240 chr19 8976147 8976980 + 0 NA intron (ENSMUSG00000071644.10, intron 2 of 4) protein_coding-intron (ENSMUSG00000071644.10, intron 7 of 9) 8347 ENSMUSG00000071644.10 ENSMUSG00000071644 ENSMUST00000135025 Eef1g protein_coding Interval_79578 chr18 33851441 33852765 + 0 NA intron (ENSMUSG00000024376.7, intron 13 of 23) protein_coding-intron (ENSMUSG00000024376.7, intron 13 of 23) 56939 ENSMUSG00000092819.1 ENSMUSG00000092819 ENSMUST00000175078 Gm23639 snoRNA Interval_122294 chr5 20993964 20994818 + 0 NA intron (ENSMUSG00000028771.13, intron 13 of 17) protein_coding-intron (ENSMUSG00000028771.13, intron 13 of 17) -37361 ENSMUSG00000106158.1 ENSMUSG00000106158 ENSMUST00000196295 Gm43216 TEC Interval_16949 chr10 70091683 70092446 + 0 NA Intergenic Intergenic -82947 ENSMUSG00000048701.13 ENSMUSG00000048701 ENSMUST00000135607 Ccdc6 protein_coding Interval_52511 chr14 47208605 47210000 + 0 NA Intergenic Intergenic 5436 ENSMUSG00000115400.1 ENSMUSG00000115400 ENSMUST00000228694 Gm49137 processed_pseudogene Interval_14774 chr10 39735961 39736741 + 0 NA intron (ENSMUSG00000019841.15, intron 2 of 32) protein_coding-intron (ENSMUSG00000019841.15, intron 1 of 31) 3987 ENSMUSG00000019841.15 ENSMUSG00000019841 ENSMUST00000127726 Rev3l protein_coding Interval_31556 chr11 101347121 101349085 + 0 NA promoter-TSS (ENSMUSG00000101925.1) antisense-promoter-TSS (ENSMUSG00000101925.1) -164 ENSMUSG00000101925.1 ENSMUSG00000101925 ENSMUST00000187880 Gm28156 antisense Interval_60369 chr15 73207577 73207945 + 0 NA intron (ENSMUSG00000022607.18, intron 34 of 34) protein_coding-intron (ENSMUSG00000022607.18, intron 31 of 31) -29914 ENSMUSG00000036698.11 ENSMUSG00000036698 ENSMUST00000230464 Ago2 protein_coding Interval_24286 chr11 32119305 32119674 + 0 NA Intergenic Intergenic -18261 ENSMUSG00000086386.1 ENSMUSG00000086386 ENSMUST00000145338 Gm12108 lincRNA Interval_46465 chr13 66369346 66370086 + 0 NA intron (ENSMUSG00000094499.3, intron 4 of 9) lincRNA-intron (ENSMUSG00000114616.1, intron 2 of 2) 23607 ENSMUSG00000114377.1 ENSMUSG00000114377 ENSMUST00000224771 Gm48247 processed_pseudogene Interval_89524 chr2 21793258 21794134 + 0 NA intron (ENSMUSG00000045967.11, intron 7 of 7) protein_coding-intron (ENSMUSG00000045967.11, intron 7 of 10) 1359 ENSMUSG00000077572.1 ENSMUSG00000077572 ENSMUST00000104384 Gm24886 snoRNA Interval_151796 chr7 126721959 126722230 + 0 NA Intergenic Intergenic -1842 ENSMUSG00000108357.1 ENSMUSG00000108357 ENSMUST00000205464 Snrp1c-ps1 processed_pseudogene Interval_165405 chr9 47548379 47549512 + 0 NA intron (ENSMUSG00000032076.20, intron 1 of 8) protein_coding-intron (ENSMUSG00000032076.20, intron 1 of 8) 18593 ENSMUSG00000032076.20 ENSMUSG00000032076 ENSMUST00000034581 Cadm1 protein_coding Interval_29437 chr11 84011084 84011717 + 0 NA intron (ENSMUSG00000034940.15, intron 14 of 20) protein_coding-intron (ENSMUSG00000034940.15, intron 14 of 21) -7801 ENSMUSG00000034940.15 ENSMUSG00000034940 ENSMUST00000132887 Synrg protein_coding Interval_3368 chr1 57506377 57506741 + 0 NA Intergenic Intergenic 12853 ENSMUSG00000101826.1 ENSMUSG00000101826 ENSMUST00000188636 Gm8581 processed_pseudogene Interval_15270 chr10 43979662 43979956 + 0 NA intron (ENSMUSG00000019866.15, intron 8 of 21) protein_coding-intron (ENSMUSG00000019866.15, intron 6 of 19) -24345 ENSMUSG00000075162.3 ENSMUSG00000075162 ENSMUST00000099864 Gm10812 pseudogene Interval_110073 chr3 152987395 152987790 + 0 NA Intergenic Intergenic -5540 ENSMUSG00000039037.5 ENSMUSG00000039037 ENSMUST00000161757 St6galnac5 protein_coding Interval_104386 chr3 64976300 64976778 + 0 NA promoter-TSS (ENSMUSG00000027827.17) protein_coding-promoter-TSS (ENSMUSG00000027827.17) -879 ENSMUSG00000027827.17 ENSMUSG00000027827 ENSMUST00000161956 Kcnab1 protein_coding Interval_5261 chr1 87040905 87042524 + 0 NA intron (ENSMUSG00000053333.15, intron 15 of 20) protein_coding-intron (ENSMUSG00000053333.15, intron 14 of 20) 4991 ENSMUSG00000103984.1 ENSMUSG00000103984 ENSMUST00000195625 Gm37447 TEC Interval_158615 chr8 84763807 84764206 + 0 NA intron (ENSMUSG00000001911.16, intron 2 of 9) protein_coding-intron (ENSMUSG00000001911.16, intron 2 of 8) 40999 ENSMUSG00000074203.4 ENSMUSG00000074203 ENSMUST00000098571 G430095P16Rik protein_coding Interval_86507 chr19 41248880 41249143 + 0 NA intron (ENSMUSG00000025016.11, intron 2 of 14) protein_coding-intron (ENSMUSG00000025016.11, intron 2 of 13) 14969 ENSMUSG00000025016.11 ENSMUSG00000025016 ENSMUST00000237871 Tm9sf3 protein_coding Interval_86652 chr19 42315133 42316569 + 0 NA intron (ENSMUSG00000042401.8, intron 5 of 14) protein_coding-intron (ENSMUSG00000042401.8, intron 5 of 14) -35681 ENSMUSG00000093234.1 ENSMUSG00000093234 ENSMUST00000175493 Mir3085 miRNA Interval_71439 chr17 23755945 23756482 + 0 NA intron (ENSMUSG00000040097.16, intron 1 of 2) protein_coding-intron (ENSMUSG00000040097.16, intron 5 of 5) 708 ENSMUSG00000040097.16 ENSMUSG00000040097 ENSMUST00000226460 Flywch1 protein_coding Interval_107650 chr3 109395828 109396109 + 0 NA intron (ENSMUSG00000033721.16, intron 1 of 2) protein_coding-intron (ENSMUSG00000033721.16, intron 1 of 26) -203101 ENSMUSG00000083717.1 ENSMUSG00000083717 ENSMUST00000120957 Gm13865 processed_pseudogene Interval_11697 chr1 184741062 184741659 + 0 NA Intergenic Intergenic 4383 ENSMUSG00000102158.1 ENSMUSG00000102158 ENSMUST00000192139 Gm34342 lincRNA Interval_171680 chr9 120119502 120119817 + 0 NA intron (ENSMUSG00000032519.11, intron 3 of 5) protein_coding-intron (ENSMUSG00000032519.11, intron 3 of 6) 4670 ENSMUSG00000032519.11 ENSMUSG00000032519 ENSMUST00000154969 Slc25a38 protein_coding Interval_11033 chr1 178590186 178590757 + 0 NA intron (ENSMUSG00000026494.12, intron 2 of 3) protein_coding-intron (ENSMUSG00000026494.12, intron 2 of 14) -46434 ENSMUSG00000064967.1 ENSMUSG00000064967 ENSMUST00000083033 Gm24405 snRNA Interval_164736 chr9 40884525 40884959 + 0 NA Intergenic Intergenic 10615 ENSMUSG00000054360.4 ENSMUSG00000054360 ENSMUST00000067375 Bsx protein_coding Interval_35399 chr12 21336028 21336341 + 0 NA intron (ENSMUSG00000052593.16, intron 8 of 15) protein_coding-intron (ENSMUSG00000052593.16, intron 11 of 18) -18170 ENSMUSG00000088997.1 ENSMUSG00000088997 ENSMUST00000158372 Gm22766 snRNA Interval_141272 chr6 126758591 126758949 + 0 NA Intergenic Intergenic -18096 ENSMUSG00000038077.7 ENSMUSG00000038077 ENSMUST00000112242 Kcna6 protein_coding Interval_161624 chr8 121637059 121637771 + 0 NA intron (ENSMUSG00000061410.6, intron 1 of 12) protein_coding-intron (ENSMUSG00000061410.6, intron 1 of 12) -16639 ENSMUSG00000098221.1 ENSMUSG00000098221 ENSMUST00000182551 Gm27030 lincRNA Interval_24421 chr11 33146830 33149799 + 0 NA promoter-TSS (ENSMUSG00000057967.12) protein_coding-promoter-TSS (ENSMUSG00000057967.12) -1519 ENSMUSG00000057967.12 ENSMUSG00000057967 ENSMUST00000020507 Fgf18 protein_coding Interval_11395 chr1 181568956 181569725 + 0 NA Intergenic Intergenic -12613 ENSMUSG00000047369.17 ENSMUSG00000047369 ENSMUST00000195808 Dnah14 protein_coding Interval_158783 chr8 86475783 86476720 + 0 NA Intergenic Intergenic 90339 ENSMUSG00000036872.16 ENSMUSG00000036872 ENSMUST00000152438 Abcc12 protein_coding Interval_131732 chr5 139552164 139554017 + 0 NA Intergenic Intergenic 9192 ENSMUSG00000029546.12 ENSMUSG00000029546 ENSMUST00000174792 Uncx protein_coding Interval_136339 chr6 53402833 53403144 + 0 NA intron (ENSMUSG00000053007.9, intron 3 of 5) protein_coding-intron (ENSMUSG00000053007.9, intron 4 of 10) -30986 ENSMUSG00000096147.1 ENSMUSG00000096147 ENSMUST00000083282 Gm25818 snRNA Interval_137738 chr6 81956428 81956628 + 0 NA intron (ENSMUSG00000035125.10, intron 5 of 5) protein_coding-intron (ENSMUSG00000035125.10, intron 15 of 16) 9113 ENSMUSG00000030045.10 ENSMUSG00000030045 ENSMUST00000148025 Mrpl19 protein_coding Interval_40366 chr12 104426664 104427253 + 0 NA Intergenic Intergenic -7558 ENSMUSG00000077398.1 ENSMUSG00000077398 ENSMUST00000104210 Gm24334 snoRNA Interval_156727 chr8 57631015 57631439 + 0 NA intron (ENSMUSG00000031608.13, intron 1 of 5) protein_coding-intron (ENSMUSG00000031608.13, intron 1 of 11) -3740 ENSMUSG00000109852.1 ENSMUSG00000109852 ENSMUST00000210698 Gm45360 TEC Interval_101836 chr3 9844936 9845326 + 0 NA Intergenic Intergenic -11768 ENSMUSG00000027508.15 ENSMUSG00000027508 ENSMUST00000159497 Pag1 protein_coding Interval_106164 chr3 94167061 94168252 + 0 NA TTS (ENSMUSG00000102285.1) unprocessed_pseudogene-TTS (ENSMUSG00000102285.1) 1103 ENSMUSG00000102285.1 ENSMUSG00000102285 ENSMUST00000193377 Gm37001 unprocessed_pseudogene Interval_140906 chr6 122694192 122696507 + 0 NA promoter-TSS (ENSMUSG00000072789.4) processed_pseudogene-promoter-TSS (ENSMUSG00000072789.4) -652 ENSMUSG00000072789.4 ENSMUSG00000072789 ENSMUST00000121713 Gm10420 processed_pseudogene Interval_139029 chr6 94296372 94296602 + 0 NA Intergenic Intergenic 27547 ENSMUSG00000107545.1 ENSMUSG00000107545 ENSMUST00000204466 Gm44307 processed_pseudogene Interval_110412 chr3 157891432 157892497 + 0 NA Intergenic Intergenic -3090 ENSMUSG00000104862.1 ENSMUSG00000104862 ENSMUST00000200636 Gm6520 processed_pseudogene Interval_48556 chr13 100158365 100158816 + 0 NA intron (ENSMUSG00000078945.10, intron 11 of 15) protein_coding-intron (ENSMUSG00000078945.10, intron 10 of 14) -4085 ENSMUSG00000113292.1 ENSMUSG00000113292 ENSMUST00000221573 Gm18413 processed_pseudogene Interval_14526 chr10 34891786 34891958 + 0 NA intron (ENSMUSG00000111042.1, intron 2 of 3) transcribed_processed_pseudogene-intron (ENSMUSG00000111042.1, intron 2 of 3) -6384 ENSMUSG00000110935.1 ENSMUSG00000110935 ENSMUST00000216459 Gm8834 processed_pseudogene Interval_115691 chr4 102254605 102255502 + 0 NA promoter-TSS (ENSMUSG00000028525.16) protein_coding-promoter-TSS (ENSMUSG00000028525.16) -177 ENSMUSG00000028525.16 ENSMUSG00000028525 ENSMUST00000106901 Pde4b protein_coding Interval_38647 chr12 80783029 80783354 + 0 NA Intergenic Intergenic 7152 ENSMUSG00000112093.1 ENSMUSG00000112093 ENSMUST00000220423 Gm47941 bidirectional_promoter_lncRNA Interval_51749 chr14 31933634 31934814 + 0 NA Intergenic Intergenic 27696 ENSMUSG00000046005.4 ENSMUSG00000046005 ENSMUST00000143315 D830044D21Rik lincRNA Interval_7559 chr1 132210788 132213083 + 0 NA intron (ENSMUSG00000079330.9, intron 1 of 4) protein_coding-intron (ENSMUSG00000079330.9, intron 1 of 3) 13847 ENSMUSG00000065435.1 ENSMUSG00000065435 ENSMUST00000083501 Mir135b miRNA Interval_12917 chr10 8130550 8131424 + 0 NA Intergenic Intergenic -45144 ENSMUSG00000112109.1 ENSMUSG00000112109 ENSMUST00000219578 Gm30906 lincRNA Interval_36075 chr12 35189947 35190134 + 0 NA Intergenic Intergenic 4857 ENSMUSG00000076253.1 ENSMUSG00000076253 ENSMUST00000102298 Mir680-3 miRNA Interval_2264 chr1 37524087 37525179 + 0 NA intron (ENSMUSG00000026110.15, intron 1 of 14) protein_coding-intron (ENSMUSG00000026110.15, intron 1 of 14) 11618 ENSMUSG00000026110.15 ENSMUSG00000026110 ENSMUST00000195598 Mgat4a protein_coding Interval_42144 chr13 9141671 9143193 + 0 NA intron (ENSMUSG00000033499.14, intron 5 of 15) protein_coding-intron (ENSMUSG00000033499.14, intron 5 of 16) -1551 ENSMUSG00000099428.1 ENSMUSG00000099428 ENSMUST00000191066 Gm28155 processed_pseudogene Interval_70198 chr17 6106339 6107798 + 0 NA promoter-TSS (ENSMUSG00000034377.10) protein_coding-promoter-TSS (ENSMUSG00000034377.10) 210 ENSMUSG00000034377.10 ENSMUSG00000034377 ENSMUST00000137063 Tulp4 protein_coding Interval_159035 chr8 88985933 88986316 + 0 NA Intergenic Intergenic -38611 ENSMUSG00000099078.1 ENSMUSG00000099078 ENSMUST00000183771 Mir8110 miRNA Interval_80048 chr18 36952536 36955017 + 0 NA promoter-TSS (ENSMUSG00000102634.1) antisense-promoter-TSS (ENSMUSG00000102634.1) -733 ENSMUSG00000102634.1 ENSMUSG00000102634 ENSMUST00000194001 Gm38225 antisense Interval_100822 chr2 172728224 172728959 + 0 NA Intergenic Intergenic 135750 ENSMUSG00000093160.1 ENSMUSG00000093160 ENSMUST00000175419 Gm22773 miRNA Interval_51597 chr14 30584247 30585741 + 0 NA Intergenic Intergenic 12845 ENSMUSG00000093156.1 ENSMUSG00000093156 ENSMUST00000175415 Mir3076 miRNA Interval_126009 chr5 76815878 76816618 + 0 NA intron (ENSMUSG00000036377.19, intron 1 of 3) protein_coding-intron (ENSMUSG00000036377.19, intron 1 of 3) -73735 ENSMUSG00000083874.1 ENSMUSG00000083874 ENSMUST00000121248 Gm7494 processed_pseudogene Interval_108255 chr3 123052018 123052553 + 0 NA Intergenic Intergenic -8550 ENSMUSG00000106114.1 ENSMUSG00000106114 ENSMUST00000197420 Gm43286 processed_pseudogene Interval_54269 chr14 67018869 67019125 + 0 NA exon (ENSMUSG00000022052.9, exon 5 of 5) protein_coding-exon (ENSMUSG00000022052.9, exon 5 of 5) -19092 ENSMUSG00000022051.15 ENSMUSG00000022051 ENSMUST00000129605 Bnip3l protein_coding Interval_88250 chr19 61151431 61152536 + 0 NA Intergenic Intergenic -11166 ENSMUSG00000074733.14 ENSMUSG00000074733 ENSMUST00000148569 Zfp950 protein_coding Interval_111870 chr4 32153470 32153927 + 0 NA Intergenic Intergenic 3912 ENSMUSG00000083872.1 ENSMUSG00000083872 ENSMUST00000119323 Gm11928 processed_pseudogene Interval_130555 chr5 128781736 128782817 + 0 NA exon (ENSMUSG00000029420.14, exon 14 of 21) protein_coding-exon (ENSMUSG00000029420.14, exon 14 of 21) -6726 ENSMUSG00000106522.1 ENSMUSG00000106522 ENSMUST00000199333 Gm42871 sense_intronic Interval_100173 chr2 167460683 167461866 + 0 NA intron (ENSMUSG00000039463.14, intron 4 of 6) protein_coding-intron (ENSMUSG00000039463.14, intron 10 of 16) 10219 ENSMUSG00000039463.14 ENSMUSG00000039463 ENSMUST00000148454 Slc9a8 protein_coding Interval_172492 chrX 21344149 21345054 + 0 NA Intergenic Intergenic -9874 ENSMUSG00000087586.1 ENSMUSG00000087586 ENSMUST00000123014 Gm6938 lincRNA Interval_5520 chr1 89521843 89522673 + 0 NA intron (ENSMUSG00000055013.16, intron 1 of 16) protein_coding-intron (ENSMUSG00000055013.16, intron 1 of 17) 38820 ENSMUSG00000104114.1 ENSMUSG00000104114 ENSMUST00000192974 Gm37297 TEC Interval_161181 chr8 118274496 118274976 + 0 NA Intergenic Intergenic 107455 ENSMUSG00000110662.1 ENSMUSG00000110662 ENSMUST00000213075 Gm45722 processed_pseudogene Interval_133909 chr6 14966857 14967262 + 0 NA intron (ENSMUSG00000029563.16, intron 1 of 3) protein_coding-intron (ENSMUSG00000029563.16, intron 1 of 18) 65608 ENSMUSG00000029563.16 ENSMUSG00000029563 ENSMUST00000115475 Foxp2 protein_coding Interval_1132 chr1 15908711 15909740 + 0 NA Intergenic Intergenic -16503 ENSMUSG00000032719.4 ENSMUSG00000032719 ENSMUST00000040695 Sbspon protein_coding Interval_11034 chr1 178601196 178601766 + 0 NA intron (ENSMUSG00000026494.12, intron 2 of 3) protein_coding-intron (ENSMUSG00000026494.12, intron 2 of 14) -35424 ENSMUSG00000064967.1 ENSMUSG00000064967 ENSMUST00000083033 Gm24405 snRNA Interval_151643 chr7 125635418 125635994 + 0 NA Intergenic Intergenic 32277 ENSMUSG00000030745.9 ENSMUSG00000030745 ENSMUST00000033000 Il21r protein_coding Interval_165809 chr9 53329767 53331172 + 0 NA intron (ENSMUSG00000034584.3, intron 1 of 5) protein_coding-intron (ENSMUSG00000034584.3, intron 1 of 5) -10720 ENSMUSG00000034584.3 ENSMUSG00000034584 ENSMUST00000139096 Exph5 protein_coding Interval_81844 chr18 65210852 65211723 + 0 NA intron (ENSMUSG00000024589.18, intron 28 of 28) protein_coding-intron (ENSMUSG00000024589.18, intron 29 of 29) -33000 ENSMUSG00000118017.1 ENSMUSG00000118017 ENSMUST00000235231 Gm29966 lincRNA Interval_44217 chr13 42308170 42308969 + 0 NA TTS (ENSMUSG00000021367.8) protein_coding-TTS (ENSMUSG00000021367.8) -3578 ENSMUSG00000113619.1 ENSMUSG00000113619 ENSMUST00000221433 Gm47118 antisense Interval_90981 chr2 33912338 33912582 + 0 NA Intergenic Intergenic 29685 ENSMUSG00000085987.2 ENSMUSG00000085987 ENSMUST00000134271 Gm13403 lincRNA Interval_114184 chr4 66330564 66331304 + 0 NA intron (ENSMUSG00000028373.16, intron 1 of 21) protein_coding-intron (ENSMUSG00000028373.16, intron 1 of 22) -22915 ENSMUSG00000083080.1 ENSMUSG00000083080 ENSMUST00000119808 Gm11484 processed_pseudogene Interval_78770 chr18 20548638 20548853 + 0 NA exon (ENSMUSG00000117627.1, exon 1 of 1) processed_pseudogene-exon (ENSMUSG00000117627.1, exon 1 of 1) 619 ENSMUSG00000117627.1 ENSMUSG00000117627 ENSMUST00000234000 Tpi-rs10 processed_pseudogene Interval_170555 chr9 108667245 108667903 + 0 NA intron (ENSMUSG00000032602.6, intron 1 of 8) protein_coding-intron (ENSMUSG00000032602.6, intron 1 of 8) -4922 ENSMUSG00000032602.6 ENSMUSG00000032602 ENSMUST00000195260 Slc25a20 protein_coding Interval_158689 chr8 85283005 85283533 + 0 NA intron (ENSMUSG00000031696.9, intron 6 of 16) protein_coding-intron (ENSMUSG00000031696.9, intron 6 of 16) 16197 ENSMUSG00000031696.9 ENSMUSG00000031696 ENSMUST00000211154 Vps35 protein_coding Interval_76542 chr17 80892393 80893162 + 0 NA Intergenic Intergenic -4016 ENSMUSG00000112121.1 ENSMUSG00000112121 ENSMUST00000220067 C230072F16Rik lincRNA Interval_93242 chr2 71395987 71397489 + 0 NA intron (ENSMUSG00000027018.11, intron 2 of 10) protein_coding-intron (ENSMUSG00000027018.11, intron 2 of 10) 16179 ENSMUSG00000086846.2 ENSMUSG00000086846 ENSMUST00000121697 Gm13642 processed_pseudogene Interval_113569 chr4 56762459 56762682 + 0 NA promoter-TSS (ENSMUSG00000080370.1) snoRNA-promoter-TSS (ENSMUSG00000080370.1) -529 ENSMUSG00000080370.1 ENSMUSG00000080370 ENSMUST00000116720 Gm22952 snoRNA Interval_86608 chr19 42021992 42023443 + 0 NA intron (ENSMUSG00000025171.2, intron 1 of 2) protein_coding-intron (ENSMUSG00000025171.2, intron 1 of 2) 5568 ENSMUSG00000025171.2 ENSMUSG00000025171 ENSMUST00000237817 Ubtd1 protein_coding Interval_95860 chr2 117336787 117337487 + 0 NA intron (ENSMUSG00000027347.18, intron 2 of 16) protein_coding-intron (ENSMUSG00000027347.18, intron 2 of 16) 5740 ENSMUSG00000027347.18 ENSMUSG00000027347 ENSMUST00000110898 Rasgrp1 protein_coding Interval_109327 chr3 138990773 138991672 + 0 NA intron (ENSMUSG00000028149.12, intron 4 of 14) protein_coding-intron (ENSMUSG00000028149.12, intron 4 of 13) -13141 ENSMUSG00000104724.1 ENSMUSG00000104724 ENSMUST00000198292 Gm43162 TEC Interval_25380 chr11 46953541 46953906 + 0 NA intron (ENSMUSG00000020354.15, intron 6 of 6) protein_coding-intron (ENSMUSG00000020354.15, intron 6 of 6) 79310 ENSMUSG00000082818.1 ENSMUSG00000082818 ENSMUST00000122081 Gm12175 processed_pseudogene Interval_40037 chr12 100691467 100693491 + 0 NA intron (ENSMUSG00000021180.9, intron 1 of 7) protein_coding-intron (ENSMUSG00000021180.9, intron 1 of 17) 32641 ENSMUSG00000021180.9 ENSMUSG00000021180 ENSMUST00000222347 Rps6ka5 protein_coding Interval_15060 chr10 42273890 42274397 + 0 NA intron (ENSMUSG00000048756.11, intron 2 of 2) protein_coding-intron (ENSMUSG00000048756.11, intron 2 of 3) -15777 ENSMUSG00000048756.11 ENSMUSG00000048756 ENSMUST00000105501 Foxo3 protein_coding Interval_167182 chr9 65986967 65988597 + 0 NA intron (ENSMUSG00000032384.16, intron 3 of 4) protein_coding-intron (ENSMUSG00000032384.16, intron 5 of 13) 29366 ENSMUSG00000032384.16 ENSMUSG00000032384 ENSMUST00000205489 Csnk1g1 protein_coding Interval_114849 chr4 86290876 86291046 + 0 NA intron (ENSMUSG00000066113.16, intron 15 of 28) protein_coding-intron (ENSMUSG00000066113.16, intron 2 of 15) 151380 ENSMUSG00000083272.1 ENSMUSG00000083272 ENSMUST00000118478 Gm12550 processed_pseudogene Interval_132827 chr5 148158697 148159158 + 0 NA intron (ENSMUSG00000029651.16, intron 2 of 3) protein_coding-intron (ENSMUSG00000029651.16, intron 4 of 14) 25450 ENSMUSG00000066554.6 ENSMUSG00000066554 ENSMUST00000150411 Gm10167 processed_pseudogene Interval_46102 chr13 61734994 61735306 + 0 NA intron (ENSMUSG00000113295.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000113295.1, intron 1 of 2) 11562 ENSMUSG00000113899.1 ENSMUSG00000113899 ENSMUST00000222177 Gm9595 processed_pseudogene Interval_75795 chr17 71443750 71445307 + 0 NA intron (ENSMUSG00000024054.14, intron 7 of 47) protein_coding-intron (ENSMUSG00000024054.14, intron 7 of 47) 14772 ENSMUSG00000091831.5 ENSMUSG00000091831 ENSMUST00000183937 Gm4707 protein_coding Interval_144189 chr7 19867181 19867447 + 0 NA TTS (ENSMUSG00000109214.1) lincRNA-TTS (ENSMUSG00000109214.1) 4124 ENSMUSG00000109214.1 ENSMUSG00000109214 ENSMUST00000207269 Gm44659 lincRNA Interval_38040 chr12 74572585 74572859 + 0 NA Intergenic Intergenic 21378 ENSMUSG00000113962.1 ENSMUSG00000113962 ENSMUST00000223276 Gm47618 processed_pseudogene Interval_10369 chr1 170064253 170064459 + 0 NA intron (ENSMUSG00000026674.9, intron 2 of 3) protein_coding-intron (ENSMUSG00000026674.9, intron 2 of 17) 46406 ENSMUSG00000026674.9 ENSMUSG00000026674 ENSMUST00000194619 Ddr2 protein_coding Interval_132201 chr5 143301472 143301704 + 0 NA exon (ENSMUSG00000039244.10, exon 6 of 6) protein_coding-exon (ENSMUSG00000039244.10, exon 6 of 6) -7965 ENSMUSG00000093910.2 ENSMUSG00000093910 ENSMUST00000180336 Zfp853 protein_coding Interval_34569 chr12 5216759 5216992 + 0 NA intron (ENSMUSG00000020627.10, intron 1 of 11) protein_coding-intron (ENSMUSG00000020627.10, intron 2 of 13) 19089 ENSMUSG00000112020.1 ENSMUSG00000112020 ENSMUST00000219031 Gm48532 TEC Interval_10099 chr1 165780046 165781267 + 0 NA promoter-TSS (ENSMUSG00000089829.2) processed_transcript-promoter-TSS (ENSMUSG00000089829.2) -543 ENSMUSG00000089829.2 ENSMUSG00000089829 ENSMUST00000193086 Gm16565 processed_transcript Interval_156257 chr8 46584003 46584820 + 0 NA intron (ENSMUSG00000038225.15, intron 11 of 14) protein_coding-intron (ENSMUSG00000038225.15, intron 11 of 14) -20338 ENSMUSG00000110270.1 ENSMUSG00000110270 ENSMUST00000211143 Gm45607 antisense Interval_116798 chr4 117342697 117343376 + 0 NA intron (ENSMUSG00000028677.19, intron 2 of 2) protein_coding-intron (ENSMUSG00000028677.19, intron 2 of 14) 46892 ENSMUSG00000085749.1 ENSMUSG00000085749 ENSMUST00000139618 Gm12843 antisense Interval_63877 chr16 4181843 4182206 + 0 NA intron (ENSMUSG00000022521.10, intron 1 of 29) protein_coding-intron (ENSMUSG00000022521.10, intron 1 of 30) -8388 ENSMUSG00000103937.1 ENSMUSG00000103937 ENSMUST00000195629 Gm37186 TEC Interval_44695 chr13 47226687 47226968 + 0 NA intron (ENSMUSG00000038068.15, intron 3 of 7) protein_coding-intron (ENSMUSG00000038068.15, intron 3 of 7) 33002 ENSMUSG00000038068.15 ENSMUSG00000038068 ENSMUST00000110111 Rnf144b protein_coding Interval_132847 chr5 148288805 148289100 + 0 NA exon (ENSMUSG00000029651.16, exon 3 of 7) protein_coding-exon (ENSMUSG00000029651.16, exon 3 of 7) 52960 ENSMUSG00000029651.16 ENSMUSG00000029651 ENSMUST00000085554 Mtus2 protein_coding Interval_46890 chr13 73212899 73213259 + 0 NA Intergenic Intergenic -20316 ENSMUSG00000113952.1 ENSMUSG00000113952 ENSMUST00000223231 Rpl31-ps2 processed_pseudogene Interval_134443 chr6 28767711 28768216 + 0 NA intron (ENSMUSG00000001424.14, intron 1 of 2) protein_coding-intron (ENSMUSG00000001424.14, intron 15 of 23) -28500 ENSMUSG00000103899.1 ENSMUSG00000103899 ENSMUST00000194243 Gm37940 TEC Interval_23037 chr11 19156506 19157492 + 0 NA Intergenic Intergenic -39565 ENSMUSG00000102585.1 ENSMUSG00000102585 ENSMUST00000193150 Gm37439 TEC Interval_92182 chr2 55492179 55492501 + 0 NA intron (ENSMUSG00000026824.11, intron 2 of 2) protein_coding-intron (ENSMUSG00000026824.11, intron 3 of 3) 55184 ENSMUSG00000026824.11 ENSMUSG00000026824 ENSMUST00000112632 Kcnj3 protein_coding Interval_6291 chr1 105522380 105524029 + 0 NA intron (ENSMUSG00000056536.14, intron 9 of 9) protein_coding-intron (ENSMUSG00000056536.14, intron 28 of 28) 41374 ENSMUSG00000100672.1 ENSMUSG00000100672 ENSMUST00000190242 Gm28404 sense_intronic Interval_51957 chr14 34252631 34253691 + 0 NA intron (ENSMUSG00000041471.9, intron 2 of 5) protein_coding-intron (ENSMUSG00000041471.9, intron 5 of 10) -7171 ENSMUSG00000115649.1 ENSMUSG00000115649 ENSMUST00000227225 Gm18813 processed_pseudogene Interval_48327 chr13 98222855 98224343 + 0 NA Intergenic Intergenic 30558 ENSMUSG00000041747.3 ENSMUSG00000041747 ENSMUST00000224842 Utp15 protein_coding Interval_5454 chr1 88990847 88991180 + 0 NA Intergenic Intergenic -25100 ENSMUSG00000099378.1 ENSMUSG00000099378 ENSMUST00000186180 1700067G17Rik lincRNA Interval_165675 chr9 50854467 50854721 + 0 NA intron (ENSMUSG00000032058.14, intron 1 of 3) protein_coding-intron (ENSMUSG00000032058.14, intron 1 of 3) -18418 ENSMUSG00000032058.14 ENSMUSG00000032058 ENSMUST00000176414 Ppp2r1b protein_coding Interval_171417 chr9 118040029 118041099 + 0 NA promoter-TSS (ENSMUSG00000039285.12) protein_coding-promoter-TSS (ENSMUSG00000039285.12) -52 ENSMUSG00000039285.12 ENSMUSG00000039285 ENSMUST00000123690 Azi2 protein_coding Interval_150608 chr7 112783857 112784697 + 0 NA intron (ENSMUSG00000055320.18, intron 2 of 13) protein_coding-intron (ENSMUSG00000055320.18, intron 2 of 13) 70326 ENSMUSG00000106046.1 ENSMUSG00000106046 ENSMUST00000199696 Gm44462 miRNA Interval_100778 chr2 172481727 172482986 + 0 NA Intergenic Intergenic 9836 ENSMUSG00000027505.2 ENSMUSG00000027505 ENSMUST00000029007 Fam209 protein_coding Interval_147880 chr7 74991337 74991531 + 0 NA Intergenic Intergenic -28737 ENSMUSG00000089522.1 ENSMUSG00000089522 ENSMUST00000158897 Gm22326 misc_RNA Interval_8641 chr1 145897779 145897966 + 0 NA Intergenic Intergenic -522564 ENSMUSG00000090323.2 ENSMUSG00000090323 ENSMUST00000163646 Gm5263 processed_pseudogene Interval_22793 chr11 15727401 15727854 + 0 NA Intergenic Intergenic 245321 ENSMUSG00000083292.1 ENSMUSG00000083292 ENSMUST00000122400 Gm12010 processed_pseudogene Interval_128968 chr5 116365572 116366981 + 0 NA Intergenic Intergenic 15359 ENSMUSG00000106766.1 ENSMUSG00000106766 ENSMUST00000200749 4933424N20Rik TEC Interval_115042 chr4 88803717 88804202 + 0 NA TTS (ENSMUSG00000094648.1) protein_coding-TTS (ENSMUSG00000094648.1) 705 ENSMUSG00000094648.1 ENSMUSG00000094648 ENSMUST00000179490 Gm13287 protein_coding Interval_52867 chr14 51247312 51248299 + 0 NA Intergenic Intergenic 8307 ENSMUSG00000047222.7 ENSMUSG00000047222 ENSMUST00000061936 Rnase2a protein_coding Interval_110325 chr3 156917627 156918575 + 0 NA intron (ENSMUSG00000086708.1, intron 1 of 1) protein_coding-intron (ENSMUSG00000040037.13, intron 2 of 6) 2679 ENSMUSG00000086708.1 ENSMUSG00000086708 ENSMUST00000144350 Gm15577 antisense Interval_125444 chr5 67194183 67194497 + 0 NA Intergenic Intergenic -66414 ENSMUSG00000037720.16 ENSMUSG00000037720 ENSMUST00000163028 Tmem33 protein_coding Interval_29284 chr11 82661673 82663460 + 0 NA Intergenic Intergenic 29213 ENSMUSG00000069796.3 ENSMUSG00000069796 ENSMUST00000125600 Gm11426 lincRNA Interval_154744 chr8 23034949 23036583 + 0 NA intron (ENSMUSG00000031543.18, intron 1 of 41) protein_coding-intron (ENSMUSG00000031543.18, intron 1 of 42) 66330 ENSMUSG00000106605.1 ENSMUSG00000106605 ENSMUST00000197671 Gm44365 miRNA Interval_22486 chr11 10987280 10987534 + 0 NA Intergenic Intergenic -129078 ENSMUSG00000050830.17 ENSMUSG00000050830 ENSMUST00000154155 Vwc2 protein_coding Interval_36993 chr12 56058119 56059040 + 0 NA Intergenic Intergenic -1824 ENSMUSG00000093300.1 ENSMUSG00000093300 ENSMUST00000175559 Gm23799 rRNA Interval_127475 chr5 104291848 104292603 + 0 NA Intergenic Intergenic -4963 ENSMUSG00000094432.1 ENSMUSG00000094432 ENSMUST00000177797 Gm23616 miRNA Interval_166719 chr9 62243925 62245149 + 0 NA promoter-TSS (ENSMUSG00000111232.1) lincRNA-promoter-TSS (ENSMUSG00000111232.1) -437 ENSMUSG00000111232.1 ENSMUSG00000111232 ENSMUST00000215490 A730043L09Rik lincRNA Interval_159105 chr8 90698246 90698756 + 0 NA Intergenic Intergenic -10438 ENSMUSG00000109726.1 ENSMUSG00000109726 ENSMUST00000211507 Gm45638 TEC Interval_159370 chr8 94118896 94119593 + 0 NA Intergenic Intergenic -17953 ENSMUSG00000031757.7 ENSMUSG00000031757 ENSMUST00000034207 Mt4 protein_coding Interval_103797 chr3 53031766 53032746 + 0 NA Intergenic Intergenic 9499 ENSMUSG00000104850.1 ENSMUSG00000104850 ENSMUST00000197735 Gm42901 antisense Interval_18503 chr10 86778162 86779620 + 0 NA promoter-TSS (ENSMUSG00000054027.8) protein_coding-promoter-TSS (ENSMUSG00000054027.8) 14919 ENSMUSG00000112743.1 ENSMUSG00000112743 ENSMUST00000218802 Gm49358 protein_coding Interval_70512 chr17 11352615 11353944 + 0 NA intron (ENSMUSG00000023826.16, intron 3 of 10) protein_coding-intron (ENSMUSG00000023826.16, intron 4 of 6) -66514 ENSMUSG00000104527.1 ENSMUSG00000104527 ENSMUST00000195853 Gm37332 TEC Interval_13811 chr10 22803204 22803597 + 0 NA Intergenic Intergenic 12081 ENSMUSG00000112727.1 ENSMUSG00000112727 ENSMUST00000220252 Gm17794 processed_pseudogene Interval_31290 chr11 99371144 99371368 + 0 NA intron (ENSMUSG00000055937.1, intron 4 of 7) protein_coding-intron (ENSMUSG00000055937.1, intron 4 of 7) 3647 ENSMUSG00000055937.1 ENSMUSG00000055937 ENSMUST00000006963 Krt28 protein_coding Interval_30921 chr11 97233534 97233865 + 0 NA intron (ENSMUSG00000001441.13, intron 12 of 21) protein_coding-intron (ENSMUSG00000001441.13, intron 12 of 22) -46429 ENSMUSG00000086680.2 ENSMUSG00000086680 ENSMUST00000133160 Gm11592 antisense Interval_4746 chr1 78263869 78264419 + 0 NA Intergenic Intergenic -46201 ENSMUSG00000032908.9 ENSMUSG00000032908 ENSMUST00000036172 Sgpp2 protein_coding Interval_98179 chr2 149489479 149490572 + 0 NA Intergenic Intergenic 76260 ENSMUSG00000089270.1 ENSMUSG00000089270 ENSMUST00000158645 Gm24551 snoRNA Interval_72644 chr17 31281784 31283217 + 0 NA Intergenic Intergenic -5539 ENSMUSG00000024033.10 ENSMUSG00000024033 ENSMUST00000235144 Rsph1 protein_coding Interval_140152 chr6 114888607 114889491 + 0 NA intron (ENSMUSG00000030315.15, intron 3 of 5) protein_coding-intron (ENSMUSG00000030315.15, intron 2 of 4) 32767 ENSMUSG00000030315.15 ENSMUSG00000030315 ENSMUST00000204693 Vgll4 protein_coding Interval_163997 chr9 30599826 30600301 + 0 NA Intergenic Intergenic 32524 ENSMUSG00000111413.1 ENSMUSG00000111413 ENSMUST00000216883 Gm47716 lincRNA Interval_143131 chr7 3566576 3567851 + 0 NA TTS (ENSMUSG00000108758.1) processed_pseudogene-TTS (ENSMUSG00000108758.1) 818 ENSMUSG00000108758.1 ENSMUSG00000108758 ENSMUST00000205290 Gm44921 processed_pseudogene Interval_39071 chr12 84857795 84858980 + 0 NA intron (ENSMUSG00000002020.15, intron 2 of 11) protein_coding-intron (ENSMUSG00000002020.15, intron 2 of 35) -17382 ENSMUSG00000092130.2 ENSMUSG00000092130 ENSMUST00000220643 D030025P21Rik antisense Interval_167531 chr9 70269530 70269814 + 0 NA intron (ENSMUSG00000032220.10, intron 1 of 17) protein_coding-intron (ENSMUSG00000032220.10, intron 1 of 27) 62322 ENSMUSG00000032220.10 ENSMUSG00000032220 ENSMUST00000034745 Myo1e protein_coding Interval_168599 chr9 84030765 84031581 + 0 NA intron (ENSMUSG00000032263.14, intron 8 of 10) protein_coding-intron (ENSMUSG00000032263.14, intron 8 of 10) -6356 ENSMUSG00000111757.1 ENSMUSG00000111757 ENSMUST00000215223 Gm46124 antisense Interval_13829 chr10 23413722 23414209 + 0 NA Intergenic Intergenic -63179 ENSMUSG00000010461.15 ENSMUSG00000010461 ENSMUST00000218956 Eya4 protein_coding Interval_117681 chr4 125518901 125519279 + 0 NA intron (ENSMUSG00000001985.9, intron 1 of 15) protein_coding-intron (ENSMUSG00000001985.9, intron 1 of 15) 14341 ENSMUSG00000094403.1 ENSMUSG00000094403 ENSMUST00000102081 Mir692-2 miRNA Interval_101910 chr3 11014692 11015087 + 0 NA Intergenic Intergenic -5286 ENSMUSG00000103323.1 ENSMUSG00000103323 ENSMUST00000195041 Gm21631 processed_pseudogene Interval_74009 chr17 46027463 46028065 + 0 NA intron (ENSMUSG00000023951.18, intron 2 of 2) protein_coding-intron (ENSMUSG00000023951.18, intron 2 of 5) -2900 ENSMUSG00000023951.18 ENSMUSG00000023951 ENSMUST00000146149 Vegfa protein_coding Interval_43424 chr13 30654586 30655212 + 0 NA Intergenic Intergenic -5173 ENSMUSG00000069255.13 ENSMUSG00000069255 ENSMUST00000095914 Dusp22 protein_coding Interval_5884 chr1 92945947 92946459 + 0 NA promoter-TSS (ENSMUSG00000026270.11) protein_coding-promoter-TSS (ENSMUSG00000026270.11) 4387 ENSMUSG00000100632.1 ENSMUSG00000100632 ENSMUST00000191563 9430060I03Rik antisense Interval_37006 chr12 56275392 56276075 + 0 NA Intergenic Intergenic -8529 ENSMUSG00000088389.1 ENSMUSG00000088389 ENSMUST00000157764 Gm24685 misc_RNA Interval_89706 chr2 24863026 24863588 + 0 NA TTS (ENSMUSG00000036893.17) protein_coding-TTS (ENSMUSG00000036893.17) 616 ENSMUSG00000036893.17 ENSMUSG00000036893 ENSMUST00000150379 Ehmt1 protein_coding Interval_76913 chr17 84948143 84948356 + 0 NA intron (ENSMUSG00000097047.2, intron 2 of 3) bidirectional_promoter_lncRNA-intron (ENSMUSG00000097047.2, intron 2 of 3) 8990 ENSMUSG00000097047.2 ENSMUSG00000097047 ENSMUST00000181147 1110020A21Rik bidirectional_promoter_lncRNA Interval_44035 chr13 40240153 40240436 + 0 NA intron (ENSMUSG00000047094.9, intron 5 of 18) protein_coding-intron (ENSMUSG00000047094.9, intron 5 of 18) 47717 ENSMUSG00000047094.9 ENSMUSG00000047094 ENSMUST00000224813 Ofcc1 protein_coding Interval_112239 chr4 37675178 37676301 + 0 NA Intergenic Intergenic 214179 ENSMUSG00000083983.1 ENSMUSG00000083983 ENSMUST00000119331 Gm12375 processed_pseudogene Interval_170587 chr9 109032100 109033657 + 0 NA TTS (ENSMUSG00000025648.18) protein_coding-TTS (ENSMUSG00000025648.18) -18277 ENSMUSG00000025647.16 ENSMUSG00000025647 ENSMUST00000199288 Shisa5 protein_coding Interval_54529 chr14 70485960 70486299 + 0 NA intron (ENSMUSG00000022098.10, intron 2 of 3) protein_coding-intron (ENSMUSG00000022098.10, intron 16 of 19) 510 ENSMUSG00000022098.10 ENSMUSG00000022098 ENSMUST00000226539 Bmp1 protein_coding Interval_120669 chr4 150001137 150002629 + 0 NA promoter-TSS (ENSMUSG00000028980.14) protein_coding-promoter-TSS (ENSMUSG00000028980.14) -618 ENSMUSG00000028980.14 ENSMUSG00000028980 ENSMUST00000152907 H6pd protein_coding Interval_168343 chr9 79045309 79045940 + 0 NA Intergenic Intergenic -15872 ENSMUSG00000111363.1 ENSMUSG00000111363 ENSMUST00000213359 Gm35024 lincRNA Interval_145254 chr7 30967004 30967580 + 0 NA intron (ENSMUSG00000001247.16, intron 2 of 9) protein_coding-intron (ENSMUSG00000001247.16, intron 2 of 9) 6030 ENSMUSG00000001247.16 ENSMUSG00000001247 ENSMUST00000147431 Lsr protein_coding Interval_98011 chr2 146657025 146657436 + 0 NA Intergenic Intergenic 98475 ENSMUSG00000080870.1 ENSMUSG00000080870 ENSMUST00000119851 Gm14111 processed_pseudogene Interval_102334 chr3 21970542 21970728 + 0 NA Intergenic Intergenic 27833 ENSMUSG00000106321.1 ENSMUSG00000106321 ENSMUST00000196313 Gm43674 lincRNA Interval_131354 chr5 136673188 136673582 + 0 NA Intergenic Intergenic -24394 ENSMUSG00000005474.9 ENSMUSG00000005474 ENSMUST00000197849 Myl10 protein_coding Interval_118038 chr4 128554772 128555006 + 0 NA exon (ENSMUSG00000028804.20, exon 65 of 71) protein_coding-exon (ENSMUSG00000028804.20, exon 65 of 71) 2314 ENSMUSG00000028804.20 ENSMUSG00000028804 ENSMUST00000221199 Csmd2 protein_coding Interval_55800 chr14 100273447 100273803 + 0 NA intron (ENSMUSG00000072294.5, intron 1 of 1) protein_coding-intron (ENSMUSG00000072294.5, intron 1 of 1) -12540 ENSMUSG00000110273.1 ENSMUSG00000110273 ENSMUST00000211525 Gm41231 lincRNA Interval_130029 chr5 123793262 123793508 + 0 NA intron (ENSMUSG00000029414.11, intron 40 of 63) protein_coding-intron (ENSMUSG00000029414.11, intron 40 of 63) 43669 ENSMUSG00000029414.11 ENSMUSG00000029414 ENSMUST00000197002 Kntc1 protein_coding Interval_31118 chr11 98249680 98250161 + 0 NA exon (ENSMUSG00000003119.14, exon 14 of 14) protein_coding-exon (ENSMUSG00000003119.14, exon 14 of 14) 8183 ENSMUSG00000003119.14 ENSMUSG00000003119 ENSMUST00000125152 Cdk12 protein_coding Interval_122901 chr5 27122640 27123287 + 0 NA intron (ENSMUSG00000061576.15, intron 1 of 25) protein_coding-intron (ENSMUSG00000061576.15, intron 1 of 25) -72992 ENSMUSG00000105946.1 ENSMUSG00000105946 ENSMUST00000199729 Gm43776 TEC Interval_108293 chr3 123371772 123372393 + 0 NA exon (ENSMUSG00000028114.16, exon 7 of 7) protein_coding-exon (ENSMUSG00000028114.16, exon 7 of 7) 14016 ENSMUSG00000028114.16 ENSMUSG00000028114 ENSMUST00000197628 Mettl14 protein_coding Interval_130586 chr5 129044686 129044948 + 0 NA Intergenic Intergenic 24615 ENSMUSG00000029430.13 ENSMUSG00000029430 ENSMUST00000111343 Ran protein_coding Interval_116376 chr4 110601056 110601232 + 0 NA intron (ENSMUSG00000061298.14, intron 3 of 12) protein_coding-intron (ENSMUSG00000061298.14, intron 3 of 12) -87412 ENSMUSG00000082348.1 ENSMUSG00000082348 ENSMUST00000121546 Gm12807 processed_pseudogene Interval_128934 chr5 116168550 116169335 + 0 NA TTS (ENSMUSG00000043913.14) protein_coding-TTS (ENSMUSG00000043913.14) 45328 ENSMUSG00000086655.1 ENSMUSG00000086655 ENSMUST00000127792 C330018A13Rik antisense Interval_94297 chr2 87622849 87623082 + 0 NA Intergenic Intergenic -4139 ENSMUSG00000068819.3 ENSMUSG00000068819 ENSMUST00000090712 Olfr1131 protein_coding Interval_160708 chr8 111739513 111739899 + 0 NA intron (ENSMUSG00000031955.10, intron 1 of 6) protein_coding-intron (ENSMUSG00000031955.10, intron 1 of 6) -7570 ENSMUSG00000031955.10 ENSMUSG00000031955 ENSMUST00000212147 Bcar1 protein_coding Interval_143729 chr7 15954790 15955643 + 0 NA intron (ENSMUSG00000074364.6, intron 4 of 5) protein_coding-intron (ENSMUSG00000074364.6, intron 4 of 5) 8968 ENSMUSG00000093249.2 ENSMUSG00000093249 ENSMUST00000175508 Gm24576 misc_RNA Interval_36911 chr12 55309262 55310257 + 0 NA intron (ENSMUSG00000021023.14, intron 3 of 6) protein_coding-intron (ENSMUSG00000021023.14, intron 3 of 6) 10182 ENSMUSG00000021023.14 ENSMUSG00000021023 ENSMUST00000183654 Prorp protein_coding Interval_170143 chr9 105520920 105521417 + 0 NA promoter-TSS (ENSMUSG00000032570.17) protein_coding-promoter-TSS (ENSMUSG00000032570.17) 6151 ENSMUSG00000032570.17 ENSMUSG00000032570 ENSMUST00000186495 Atp2c1 protein_coding Interval_2082 chr1 36291645 36291881 + 0 NA Intergenic Intergenic -15995 ENSMUSG00000037447.16 ENSMUSG00000037447 ENSMUST00000141121 Arid5a protein_coding Interval_136828 chr6 61074504 61075371 + 0 NA Intergenic Intergenic -5682 ENSMUSG00000108087.1 ENSMUSG00000108087 ENSMUST00000203362 Gm43893 lincRNA Interval_56335 chr14 117793796 117794428 + 0 NA intron (ENSMUSG00000058571.11, intron 4 of 9) protein_coding-intron (ENSMUSG00000058571.11, intron 4 of 8) 159735 ENSMUSG00000098648.1 ENSMUSG00000098648 ENSMUST00000183564 Mir6239 miRNA Interval_102657 chr3 28968567 28969138 + 0 NA Intergenic Intergenic 76235 ENSMUSG00000074655.1 ENSMUSG00000074655 ENSMUST00000099170 Gm1527 protein_coding Interval_75478 chr17 67100450 67100732 + 0 NA intron (ENSMUSG00000033278.10, intron 2 of 19) protein_coding-intron (ENSMUSG00000033278.10, intron 2 of 32) -74356 ENSMUSG00000093508.1 ENSMUSG00000093508 ENSMUST00000176783 Mir5709 miRNA Interval_40069 chr12 100988498 100988722 + 0 NA intron (ENSMUSG00000113634.1, intron 2 of 4) protein_coding-intron (ENSMUSG00000021182.16, intron 3 of 29) -18377 ENSMUSG00000113634.1 ENSMUSG00000113634 ENSMUST00000223241 Gm36756 antisense Interval_155264 chr8 29205765 29205966 + 0 NA intron (ENSMUSG00000063626.6, intron 1 of 14) protein_coding-intron (ENSMUSG00000063626.6, intron 1 of 17) 13562 ENSMUSG00000063626.6 ENSMUSG00000063626 ENSMUST00000209401 Unc5d protein_coding Interval_13123 chr10 11808054 11808268 + 0 NA Intergenic Intergenic 30734 ENSMUSG00000112233.1 ENSMUSG00000112233 ENSMUST00000219464 Gm48698 processed_pseudogene Interval_86963 chr19 45231045 45231596 + 0 NA Intergenic Intergenic 4492 ENSMUSG00000025216.9 ENSMUSG00000025216 ENSMUST00000099401 Lbx1 protein_coding Interval_83182 chr18 82591977 82593389 + 0 NA TTS (ENSMUSG00000041258.18) protein_coding-TTS (ENSMUSG00000041258.18) 38137 ENSMUSG00000041607.17 ENSMUSG00000041607 ENSMUST00000150952 Mbp protein_coding Interval_52025 chr14 34687587 34688068 + 0 NA intron (ENSMUSG00000041408.18, intron 2 of 19) protein_coding-intron (ENSMUSG00000041408.18, intron 2 of 18) -14064 ENSMUSG00000115007.1 ENSMUSG00000115007 ENSMUST00000228874 5830448L01Rik bidirectional_promoter_lncRNA Interval_34854 chr12 12724942 12726189 + 0 NA exon (ENSMUSG00000113009.1, exon 1 of 1) TEC-exon (ENSMUSG00000113009.1, exon 1 of 1) 2704 ENSMUSG00000113009.1 ENSMUSG00000113009 ENSMUST00000222770 3732407C23Rik TEC Interval_63232 chr15 99847386 99848560 + 0 NA intron (ENSMUSG00000023022.14, intron 1 of 1) protein_coding-intron (ENSMUSG00000023022.14, intron 1 of 10) 26698 ENSMUSG00000023022.14 ENSMUSG00000023022 ENSMUST00000171450 Lima1 protein_coding Interval_101585 chr3 7331804 7332102 + 0 NA Intergenic Intergenic 86506 ENSMUSG00000103274.1 ENSMUSG00000103274 ENSMUST00000192071 Gm37918 processed_pseudogene Interval_46657 chr13 68260277 68260694 + 0 NA Intergenic Intergenic 79191 ENSMUSG00000113342.1 ENSMUSG00000113342 ENSMUST00000221571 AA414992 TEC Interval_20720 chr10 120515507 120516562 + 0 NA Intergenic Intergenic -39565 ENSMUSG00000056758.14 ENSMUSG00000056758 ENSMUST00000159310 Hmga2 protein_coding Interval_28526 chr11 76509007 76509896 + 0 NA promoter-TSS (ENSMUSG00000017631.19) protein_coding-promoter-TSS (ENSMUSG00000017631.19) -4618 ENSMUSG00000080763.2 ENSMUSG00000080763 ENSMUST00000119724 Gm12341 processed_pseudogene Interval_101889 chr3 10395647 10396229 + 0 NA TTS (ENSMUSG00000027536.6) protein_coding-TTS (ENSMUSG00000027536.6) 28980 ENSMUSG00000027536.6 ENSMUSG00000027536 ENSMUST00000191826 Chmp4c protein_coding Interval_47867 chr13 94014544 94015030 + 0 NA Intergenic Intergenic -23019 ENSMUSG00000113791.1 ENSMUSG00000113791 ENSMUST00000221440 Gm47216 lincRNA Interval_32057 chr11 104906397 104907383 + 0 NA intron (ENSMUSG00000040838.10, intron 85 of 187) protein_coding-intron (ENSMUSG00000040838.10, intron 85 of 187) -21326 ENSMUSG00000080694.1 ENSMUSG00000080694 ENSMUST00000118253 Gm11621 processed_pseudogene Interval_69363 chr16 92475159 92475834 + 0 NA Intergenic Intergenic -3246 ENSMUSG00000051297.8 ENSMUSG00000051297 ENSMUST00000160494 2410124H12Rik sense_overlapping Interval_47015 chr13 74367112 74367803 + 0 NA Intergenic Intergenic -3452 ENSMUSG00000021579.4 ENSMUSG00000021579 ENSMUST00000022064 Lrrc14b protein_coding Interval_13487 chr10 18590894 18592284 + 0 NA exon (ENSMUSG00000019852.7, exon 33 of 34) protein_coding-exon (ENSMUSG00000019852.7, exon 33 of 34) -25634 ENSMUSG00000111173.1 ENSMUSG00000111173 ENSMUST00000215943 Gm48297 processed_pseudogene Interval_164288 chr9 35031583 35032360 + 0 NA intron (ENSMUSG00000032036.15, intron 15 of 16) protein_coding-intron (ENSMUSG00000032036.15, intron 15 of 16) 40660 ENSMUSG00000032038.7 ENSMUSG00000032038 ENSMUST00000215463 St3gal4 protein_coding Interval_122005 chr5 13717638 13717887 + 0 NA Intergenic Intergenic -45856 ENSMUSG00000105833.1 ENSMUSG00000105833 ENSMUST00000200620 Gm4751 processed_pseudogene Interval_65584 chr16 23609789 23610195 + 0 NA promoter-TSS (ENSMUSG00000033355.6) protein_coding-promoter-TSS (ENSMUSG00000033355.6) 8250 ENSMUSG00000033355.6 ENSMUSG00000033355 ENSMUST00000211349 Rtp4 protein_coding Interval_39570 chr12 90878595 90878847 + 0 NA intron (ENSMUSG00000097071.2, intron 2 of 4) lincRNA-intron (ENSMUSG00000097071.2, intron 2 of 4) 59661 ENSMUSG00000113806.1 ENSMUSG00000113806 ENSMUST00000221621 Gm47688 processed_pseudogene Interval_19619 chr10 105840596 105841877 + 0 NA promoter-TSS (ENSMUSG00000019897.8) protein_coding-promoter-TSS (ENSMUSG00000019897.8) 144 ENSMUSG00000036009.16 ENSMUSG00000036009 ENSMUST00000176830 Mettl25 protein_coding Interval_154074 chr8 12499660 12500131 + 0 NA Intergenic Intergenic -3004 ENSMUSG00000109582.1 ENSMUSG00000109582 ENSMUST00000211062 4933439N14Rik lincRNA Interval_168378 chr9 79815890 79816407 + 0 NA intron (ENSMUSG00000034898.17, intron 5 of 6) protein_coding-intron (ENSMUSG00000034898.17, intron 5 of 5) 22239 ENSMUSG00000092565.1 ENSMUSG00000092565 ENSMUST00000174028 Gm20477 processed_pseudogene Interval_76658 chr17 83248101 83249083 + 0 NA Intergenic Intergenic -21379 ENSMUSG00000088410.1 ENSMUSG00000088410 ENSMUST00000157785 Gm24240 snoRNA Interval_138539 chr6 89024187 89024570 + 0 NA intron (ENSMUSG00000055403.13, intron 1 of 2) lincRNA-intron (ENSMUSG00000055403.13, intron 1 of 2) 73695 ENSMUSG00000055403.13 ENSMUSG00000055403 ENSMUST00000153981 4933427D06Rik lincRNA Interval_92708 chr2 63541589 63542776 + 0 NA Intergenic Intergenic -109988 ENSMUSG00000065837.1 ENSMUSG00000065837 ENSMUST00000083903 Gm23503 snRNA Interval_71257 chr17 21679318 21680260 + 0 NA Intergenic Intergenic -10391 ENSMUSG00000073448.2 ENSMUSG00000073448 ENSMUST00000097384 Gm10509 processed_pseudogene Interval_166057 chr9 56135580 56135889 + 0 NA TTS (ENSMUSG00000032324.11) protein_coding-TTS (ENSMUSG00000032324.11) 29743 ENSMUSG00000032324.11 ENSMUSG00000032324 ENSMUST00000216320 Tspan3 protein_coding Interval_151637 chr7 125571902 125572144 + 0 NA promoter-TSS (ENSMUSG00000108524.1) antisense-promoter-TSS (ENSMUSG00000108524.1) 94 ENSMUSG00000108524.1 ENSMUSG00000108524 ENSMUST00000205394 Gm44876 antisense Interval_1635 chr1 30576088 30576416 + 0 NA Intergenic Intergenic 143710 ENSMUSG00000053185.2 ENSMUSG00000053185 ENSMUST00000065469 Gm9898 lincRNA Interval_52039 chr14 34768280 34770656 + 0 NA exon (ENSMUSG00000097310.2, exon 3 of 3) lincRNA-exon (ENSMUSG00000097310.2, exon 3 of 3) 587 ENSMUSG00000115109.1 ENSMUSG00000115109 ENSMUST00000228194 Gm49032 lincRNA Interval_167336 chr9 67539063 67540775 + 0 NA promoter-TSS (ENSMUSG00000052698.15) protein_coding-promoter-TSS (ENSMUSG00000052698.15) 115416 ENSMUSG00000111412.1 ENSMUSG00000111412 ENSMUST00000216972 Gm47047 antisense Interval_39373 chr12 86962089 86962742 + 0 NA TTS (ENSMUSG00000034157.12) protein_coding-TTS (ENSMUSG00000034157.12) 9758 ENSMUSG00000034157.12 ENSMUSG00000034157 ENSMUST00000191463 Cipc protein_coding Interval_54328 chr14 67708642 67708897 + 0 NA intron (ENSMUSG00000048922.18, intron 4 of 14) protein_coding-intron (ENSMUSG00000048922.18, intron 4 of 7) 6841 ENSMUSG00000048922.18 ENSMUSG00000048922 ENSMUST00000124045 Cdca2 protein_coding Interval_27830 chr11 70284087 70284608 + 0 NA Intergenic Intergenic -29006 ENSMUSG00000000320.10 ENSMUSG00000000320 ENSMUST00000108574 Alox12 protein_coding Interval_79454 chr18 32039468 32040064 + 0 NA Intergenic Intergenic 8677 ENSMUSG00000085300.1 ENSMUSG00000085300 ENSMUST00000146065 Gm16345 processed_pseudogene Interval_15151 chr10 42924728 42925709 + 0 NA intron (ENSMUSG00000044770.14, intron 2 of 2) protein_coding-intron (ENSMUSG00000044770.14, intron 4 of 8) -36421 ENSMUSG00000111086.1 ENSMUSG00000111086 ENSMUST00000214070 Gm48671 lincRNA Interval_106372 chr3 95701396 95702860 + 0 NA Intergenic Intergenic -24977 ENSMUSG00000015850.11 ENSMUSG00000015850 ENSMUST00000148854 Adamtsl4 protein_coding Interval_88827 chr2 11488493 11489534 + 0 NA intron (ENSMUSG00000026773.19, intron 5 of 11) protein_coding-intron (ENSMUSG00000026773.19, intron 5 of 16) -32693 ENSMUSG00000102329.1 ENSMUSG00000102329 ENSMUST00000192087 Gm10851 antisense Interval_151115 chr7 118633211 118634038 + 0 NA promoter-TSS (ENSMUSG00000030650.18) protein_coding-promoter-TSS (ENSMUSG00000030650.18) 11110 ENSMUSG00000030650.18 ENSMUSG00000030650 ENSMUST00000057320 Tmc5 protein_coding Interval_42115 chr13 8949767 8950265 + 0 NA promoter-TSS (ENSMUSG00000096771.1) snoRNA-promoter-TSS (ENSMUSG00000096771.1) 37 ENSMUSG00000096771.1 ENSMUSG00000096771 ENSMUST00000103976 Gm22115 snoRNA Interval_155495 chr8 33905835 33906248 + 0 NA intron (ENSMUSG00000031586.17, intron 1 of 8) protein_coding-intron (ENSMUSG00000031586.17, intron 1 of 7) -20294 ENSMUSG00000098166.1 ENSMUSG00000098166 ENSMUST00000182843 Gm26978 sense_intronic Interval_141766 chr6 134312552 134312751 + 0 NA intron (ENSMUSG00000107666.1, intron 8 of 8) antisense-intron (ENSMUSG00000107666.1, intron 8 of 8) -66285 ENSMUSG00000108263.1 ENSMUSG00000108263 ENSMUST00000204426 1700051K13Rik TEC Interval_40747 chr12 108120170 108121988 + 0 NA intron (ENSMUSG00000056770.15, intron 1 of 2) protein_coding-intron (ENSMUSG00000056770.15, intron 6 of 12) 41930 ENSMUSG00000056770.15 ENSMUSG00000056770 ENSMUST00000125916 Setd3 protein_coding Interval_57211 chr15 7812855 7813952 + 0 NA intron (ENSMUSG00000022144.4, intron 1 of 2) protein_coding-intron (ENSMUSG00000022144.4, intron 1 of 2) 2557 ENSMUSG00000022144.4 ENSMUSG00000022144 ENSMUST00000022744 Gdnf protein_coding Interval_54942 chr14 76387585 76388470 + 0 NA Intergenic Intergenic -30801 ENSMUSG00000022010.19 ENSMUSG00000022010 ENSMUST00000133224 Tsc22d1 protein_coding Interval_89657 chr2 24149868 24150203 + 0 NA Intergenic Intergenic -3126 ENSMUSG00000026985.1 ENSMUSG00000026985 ENSMUST00000028363 Il1f8 protein_coding Interval_109705 chr3 146145510 146146343 + 0 NA Intergenic Intergenic 6846 ENSMUSG00000036853.5 ENSMUSG00000036853 ENSMUST00000146689 Mcoln3 protein_coding Interval_81940 chr18 66064045 66065799 + 0 NA intron (ENSMUSG00000046318.16, intron 4 of 4) protein_coding-intron (ENSMUSG00000046318.16, intron 10 of 11) 28095 ENSMUSG00000117907.1 ENSMUSG00000117907 ENSMUST00000235539 Gm50142 lincRNA Interval_113331 chr4 53511557 53512790 + 0 NA intron (ENSMUSG00000028412.17, intron 3 of 15) protein_coding-intron (ENSMUSG00000028412.17, intron 3 of 15) 52524 ENSMUSG00000084970.1 ENSMUSG00000084970 ENSMUST00000138377 1700060J05Rik antisense Interval_8502 chr1 140245184 140246449 + 0 NA promoter-TSS (ENSMUSG00000052726.16) protein_coding-promoter-TSS (ENSMUSG00000052726.16) -342 ENSMUSG00000052726.16 ENSMUSG00000052726 ENSMUST00000193606 Kcnt2 protein_coding Interval_91195 chr2 35841104 35842053 + 0 NA intron (ENSMUSG00000026885.13, intron 6 of 9) protein_coding-intron (ENSMUSG00000026885.13, intron 6 of 9) -2617 ENSMUSG00000106994.1 ENSMUSG00000106994 ENSMUST00000202084 Gm10829 TEC Interval_24012 chr11 29475706 29476070 + 0 NA intron (ENSMUSG00000032740.17, intron 1 of 12) protein_coding-intron (ENSMUSG00000032740.17, intron 17 of 31) 39143 ENSMUSG00000032673.5 ENSMUSG00000032673 ENSMUST00000039900 Prorsd1 protein_coding Interval_127864 chr5 108366512 108369677 + 0 NA promoter-TSS (ENSMUSG00000105867.2) protein_coding-promoter-TSS (ENSMUSG00000105867.2) -172 ENSMUSG00000105867.2 ENSMUSG00000105867 ENSMUST00000197216 Gm42517 protein_coding Interval_116377 chr4 110611945 110612661 + 0 NA intron (ENSMUSG00000061298.14, intron 3 of 12) protein_coding-intron (ENSMUSG00000061298.14, intron 3 of 12) -98571 ENSMUSG00000082348.1 ENSMUSG00000082348 ENSMUST00000121546 Gm12807 processed_pseudogene Interval_91368 chr2 38326659 38327611 + 0 NA Intergenic Intergenic 21181 ENSMUSG00000098383.1 ENSMUSG00000098383 ENSMUST00000184325 Gm27197 antisense Interval_38135 chr12 75871202 75871538 + 0 NA intron (ENSMUSG00000063450.14, intron 2 of 12) protein_coding-intron (ENSMUSG00000063450.14, intron 2 of 115) -37733 ENSMUSG00000092922.1 ENSMUSG00000092922 ENSMUST00000175181 Mir5101 miRNA Interval_105759 chr3 89182768 89183771 + 0 NA promoter-TSS (ENSMUSG00000032657.15) protein_coding-promoter-TSS (ENSMUSG00000032657.15) -976 ENSMUSG00000086718.1 ENSMUSG00000086718 ENSMUST00000131146 Gm16069 antisense Interval_135733 chr6 45913002 45913294 + 0 NA intron (ENSMUSG00000039419.17, intron 3 of 23) protein_coding-intron (ENSMUSG00000039419.17, intron 3 of 23) 11210 ENSMUSG00000107515.1 ENSMUSG00000107515 ENSMUST00000205039 Gm43886 TEC Interval_158187 chr8 79622008 79623668 + 0 NA Intergenic Intergenic -38246 ENSMUSG00000036990.13 ENSMUSG00000036990 ENSMUST00000172614 Otud4 protein_coding Interval_124085 chr5 38178405 38178761 + 0 NA Intergenic Intergenic -19110 ENSMUSG00000029126.7 ENSMUSG00000029126 ENSMUST00000201134 Nsg1 protein_coding Interval_114507 chr4 81666252 81666508 + 0 NA Intergenic Intergenic -30061 ENSMUSG00000083385.1 ENSMUSG00000083385 ENSMUST00000117951 Gm11411 processed_pseudogene Interval_106932 chr3 102023428 102024074 + 0 NA Intergenic Intergenic 13596 ENSMUSG00000048540.8 ENSMUSG00000048540 ENSMUST00000198675 Nhlh2 protein_coding Interval_76838 chr17 84424624 84425896 + 0 NA intron (ENSMUSG00000024251.10, intron 5 of 14) protein_coding-intron (ENSMUSG00000024251.10, intron 20 of 37) 33831 ENSMUSG00000096415.1 ENSMUSG00000096415 ENSMUST00000179017 Gm24722 snRNA Interval_145819 chr7 39560306 39561120 + 0 NA intron (ENSMUSG00000108621.1, intron 2 of 5) lincRNA-intron (ENSMUSG00000108621.1, intron 2 of 5) 8213 ENSMUSG00000108621.1 ENSMUSG00000108621 ENSMUST00000186011 Gm37494 lincRNA Interval_80494 chr18 42740644 42742044 + 0 NA intron (ENSMUSG00000024500.20, intron 1 of 8) protein_coding-intron (ENSMUSG00000024500.20, intron 1 of 8) -118885 ENSMUSG00000117926.1 ENSMUSG00000117926 ENSMUST00000236808 C030004G16Rik lincRNA Interval_63864 chr16 4068567 4069291 + 0 NA exon (ENSMUSG00000005981.11, exon 2 of 18) protein_coding-exon (ENSMUSG00000005981.11, exon 2 of 18) 1586 ENSMUSG00000116301.1 ENSMUSG00000116301 ENSMUST00000230558 Gm49547 processed_pseudogene Interval_106564 chr3 97268203 97270149 + 0 NA intron (ENSMUSG00000038256.15, intron 1 of 3) protein_coding-intron (ENSMUSG00000038256.15, intron 1 of 3) 5888 ENSMUSG00000104745.1 ENSMUSG00000104745 ENSMUST00000198200 Gm43073 TEC Interval_29944 chr11 87949166 87949422 + 0 NA Intergenic Intergenic 4891 ENSMUSG00000044639.3 ENSMUSG00000044639 ENSMUST00000156462 Gm11507 processed_pseudogene Interval_84180 chr19 8555508 8555705 + 0 NA Intergenic Intergenic -13808 ENSMUSG00000110298.1 ENSMUSG00000110298 ENSMUST00000211159 Gm8189 transcribed_unprocessed_pseudogene Interval_165747 chr9 52116152 52117052 + 0 NA TTS (ENSMUSG00000099311.1) miRNA-TTS (ENSMUSG00000099311.1) 979 ENSMUSG00000099311.1 ENSMUSG00000099311 ENSMUST00000184156 Mir6244 miRNA Interval_4156 chr1 71017328 71017748 + 0 NA Intergenic Intergenic 22492 ENSMUSG00000089965.1 ENSMUSG00000089965 ENSMUST00000159588 Gm16236 processed_pseudogene Interval_120958 chr4 151925986 151927089 + 0 NA Intergenic Intergenic -10123 ENSMUSG00000104142.1 ENSMUSG00000104142 ENSMUST00000191938 Gm37141 TEC Interval_146605 chr7 47728582 47728776 + 0 NA Intergenic Intergenic 5261 ENSMUSG00000101739.1 ENSMUSG00000101739 ENSMUST00000190232 Gm5733 unprocessed_pseudogene Interval_67276 chr16 45260937 45261938 + 0 NA Intergenic Intergenic 11066 ENSMUSG00000052013.15 ENSMUSG00000052013 ENSMUST00000231703 Btla protein_coding Interval_80607 chr18 44574562 44575860 + 0 NA intron (ENSMUSG00000071856.10, intron 3 of 18) protein_coding-intron (ENSMUSG00000071856.10, intron 3 of 18) -86892 ENSMUSG00000097610.2 ENSMUSG00000097610 ENSMUST00000202771 A930012L18Rik antisense Interval_137653 chr6 77650083 77650341 + 0 NA intron (ENSMUSG00000063063.12, intron 4 of 7) protein_coding-intron (ENSMUSG00000063063.12, intron 4 of 17) 45561 ENSMUSG00000107483.1 ENSMUSG00000107483 ENSMUST00000205061 Gm44288 TEC Interval_142015 chr6 136553644 136554375 + 0 NA promoter-TSS (ENSMUSG00000030213.12) protein_coding-promoter-TSS (ENSMUSG00000030213.12) -34978 ENSMUSG00000107702.1 ENSMUSG00000107702 ENSMUST00000204157 Gm44140 bidirectional_promoter_lncRNA Interval_74472 chr17 51447926 51448610 + 0 NA Intergenic Intergenic -12430 ENSMUSG00000117204.1 ENSMUSG00000117204 ENSMUST00000233466 C330011F03Rik lincRNA Interval_43013 chr13 23064179 23064389 + 0 NA Intergenic Intergenic -3741 ENSMUSG00000099917.2 ENSMUSG00000099917 ENSMUST00000072972 Vmn1r215 protein_coding Interval_155005 chr8 25624022 25624935 + 0 NA intron (ENSMUSG00000054823.16, intron 1 of 9) protein_coding-intron (ENSMUSG00000054823.16, intron 1 of 7) -7472 ENSMUSG00000088037.1 ENSMUSG00000088037 ENSMUST00000157412 Gm24992 snoRNA Interval_49865 chr13 117325388 117325605 + 0 NA Intergenic Intergenic 33124 ENSMUSG00000114540.1 ENSMUSG00000114540 ENSMUST00000225588 Gm6421 processed_pseudogene Interval_7852 chr1 134143530 134144273 + 0 NA intron (ENSMUSG00000026450.14, intron 4 of 10) protein_coding-intron (ENSMUSG00000026450.14, intron 3 of 10) 32659 ENSMUSG00000026450.14 ENSMUSG00000026450 ENSMUST00000086475 Chit1 protein_coding Interval_93912 chr2 79004733 79005047 + 0 NA intron (ENSMUSG00000102286.1, intron 2 of 4) TEC-intron (ENSMUSG00000102286.1, intron 2 of 4) 18381 ENSMUSG00000083950.1 ENSMUSG00000083950 ENSMUST00000119028 Gm14466 processed_pseudogene Interval_55652 chr14 98181648 98181862 + 0 NA Intergenic Intergenic -11990 ENSMUSG00000055639.16 ENSMUSG00000055639 ENSMUST00000156684 Dach1 protein_coding Interval_117884 chr4 126868432 126869591 + 0 NA intron (ENSMUSG00000042446.16, intron 1 of 1) protein_coding-intron (ENSMUSG00000028830.14, intron 23 of 23) -7899 ENSMUSG00000088984.1 ENSMUSG00000088984 ENSMUST00000158359 Gm25604 snoRNA Interval_140571 chr6 119665766 119666396 + 0 NA intron (ENSMUSG00000030172.15, intron 11 of 15) protein_coding-intron (ENSMUSG00000030172.15, intron 15 of 18) -43976 ENSMUSG00000030172.15 ENSMUSG00000030172 ENSMUST00000183741 Erc1 protein_coding Interval_163688 chr9 24357072 24358532 + 0 NA intron (ENSMUSG00000074465.2, intron 2 of 3) antisense-intron (ENSMUSG00000074465.2, intron 2 of 3) 6684 ENSMUSG00000088104.1 ENSMUSG00000088104 ENSMUST00000157479 Gm22380 snoRNA Interval_88386 chr2 4628946 4630373 + 0 NA intron (ENSMUSG00000039449.14, intron 8 of 8) protein_coding-intron (ENSMUSG00000039449.14, intron 9 of 9) 22422 ENSMUSG00000039449.14 ENSMUSG00000039449 ENSMUST00000144650 Prpf18 protein_coding Interval_10874 chr1 176537711 176538664 + 0 NA Intergenic Intergenic -10914 ENSMUSG00000104021.1 ENSMUSG00000104021 ENSMUST00000194241 Gm36536 lincRNA Interval_118110 chr4 129012924 129014078 + 0 NA Intergenic Intergenic 20148 ENSMUSG00000028792.14 ENSMUSG00000028792 ENSMUST00000152762 Ak2 protein_coding Interval_148737 chr7 84831890 84832188 + 0 NA Intergenic Intergenic 2840 ENSMUSG00000068629.4 ENSMUSG00000068629 ENSMUST00000173735 Gm6155 processed_pseudogene Interval_16462 chr10 63006164 63006460 + 0 NA intron (ENSMUSG00000020070.18, intron 2 of 3) protein_coding-intron (ENSMUSG00000020070.18, intron 13 of 17) 7533 ENSMUSG00000084985.1 ENSMUSG00000084985 ENSMUST00000129470 Gm16135 antisense Interval_154443 chr8 17532220 17532991 + 0 NA intron (ENSMUSG00000060924.15, intron 1 of 2) protein_coding-intron (ENSMUSG00000060924.15, intron 1 of 69) 2676 ENSMUSG00000060924.15 ENSMUSG00000060924 ENSMUST00000122983 Csmd1 protein_coding Interval_92649 chr2 61988165 61989228 + 0 NA Intergenic Intergenic -18024 ENSMUSG00000083018.1 ENSMUSG00000083018 ENSMUST00000121668 Gm13555 processed_pseudogene Interval_91907 chr2 51192119 51192830 + 0 NA Intergenic Intergenic -26908 ENSMUSG00000100496.1 ENSMUSG00000100496 ENSMUST00000191519 Gm28639 lincRNA Interval_69633 chr16 94750847 94751066 + 0 NA intron (ENSMUSG00000116641.1, intron 2 of 4) protein_coding-intron (ENSMUSG00000043301.16, intron 4 of 4) 29062 ENSMUSG00000116641.1 ENSMUSG00000116641 ENSMUST00000232585 Gm41505 antisense Interval_154394 chr8 15549368 15550353 + 0 NA Intergenic Intergenic 12278 ENSMUSG00000109839.1 ENSMUSG00000109839 ENSMUST00000209975 Gm45677 TEC Interval_94714 chr2 93635861 93636753 + 0 NA Intergenic Intergenic -6081 ENSMUSG00000040310.12 ENSMUSG00000040310 ENSMUST00000111254 Alx4 protein_coding Interval_38975 chr12 84217291 84219354 + 0 NA intron (ENSMUSG00000042507.15, intron 1 of 12) protein_coding-intron (ENSMUSG00000042507.15, intron 1 of 12) 559 ENSMUSG00000042507.15 ENSMUSG00000042507 ENSMUST00000130038 Elmsan1 protein_coding Interval_58561 chr15 36139769 36142065 + 0 NA promoter-TSS (ENSMUSG00000037627.16) protein_coding-promoter-TSS (ENSMUSG00000037627.16) -19991 ENSMUSG00000092230.1 ENSMUSG00000092230 ENSMUST00000174284 Gm18889 processed_pseudogene Interval_94260 chr2 87066197 87066433 + 0 NA Intergenic Intergenic 9502 ENSMUSG00000075163.5 ENSMUSG00000075163 ENSMUST00000099865 Olfr1107 protein_coding Interval_40296 chr12 103301236 103301488 + 0 NA Intergenic Intergenic -9613 ENSMUSG00000096753.7 ENSMUSG00000096753 ENSMUST00000179363 Fam181a protein_coding Interval_120818 chr4 150807780 150808540 + 0 NA Intergenic Intergenic -17573 ENSMUSG00000085097.1 ENSMUSG00000085097 ENSMUST00000133196 Gm13049 lincRNA Interval_171229 chr9 115418180 115418441 + 0 NA Intergenic Intergenic -6957 ENSMUSG00000095467.1 ENSMUSG00000095467 ENSMUST00000178754 Gm22243 miRNA Interval_63609 chr15 102331316 102332337 + 0 NA promoter-TSS (ENSMUSG00000001285.12) protein_coding-promoter-TSS (ENSMUSG00000001285.12) -91 ENSMUSG00000001285.12 ENSMUSG00000001285 ENSMUST00000168547 Myg1 protein_coding Interval_31780 chr11 102803319 102803684 + 0 NA exon (ENSMUSG00000034520.14, exon 1 of 2) protein_coding-exon (ENSMUSG00000034520.14, exon 1 of 2) 2287 ENSMUSG00000034520.14 ENSMUSG00000034520 ENSMUST00000131164 Gjc1 protein_coding Interval_46433 chr13 65226320 65226528 + 0 NA Intergenic Intergenic 14313 ENSMUSG00000113500.1 ENSMUSG00000113500 ENSMUST00000220741 Gm47249 lincRNA Interval_159503 chr8 95123228 95123727 + 0 NA intron (ENSMUSG00000110517.1, intron 1 of 1) protein_coding-intron (ENSMUSG00000031788.14, intron 3 of 19) -3189 ENSMUSG00000110428.1 ENSMUSG00000110428 ENSMUST00000212199 Gm45812 antisense Interval_108116 chr3 121600902 121603283 + 0 NA Intergenic Intergenic 41275 ENSMUSG00000044522.8 ENSMUSG00000044522 ENSMUST00000198402 A730020M07Rik lincRNA Interval_18208 chr10 83703308 83703697 + 0 NA Intergenic Intergenic -34407 ENSMUSG00000087651.3 ENSMUSG00000087651 ENSMUST00000218623 1500009L16Rik protein_coding Interval_27810 chr11 70114628 70115747 + 0 NA Intergenic Intergenic 14155 ENSMUSG00000081515.1 ENSMUSG00000081515 ENSMUST00000118803 Gm12311 processed_pseudogene Interval_134249 chr6 23711721 23712303 + 0 NA intron (ENSMUSG00000017978.18, intron 2 of 29) protein_coding-intron (ENSMUSG00000017978.18, intron 1 of 29) -56876 ENSMUSG00000078179.1 ENSMUSG00000078179 ENSMUST00000104979 Rnf148 protein_coding Interval_79636 chr18 34149508 34150088 + 0 NA Intergenic Intergenic -24081 ENSMUSG00000118054.1 ENSMUSG00000118054 ENSMUST00000238048 Gm5238 processed_pseudogene Interval_68421 chr16 76325193 76325477 + 0 NA intron (ENSMUSG00000048490.14, intron 2 of 2) protein_coding-intron (ENSMUSG00000048490.14, intron 3 of 3) 48491 ENSMUSG00000048490.14 ENSMUSG00000048490 ENSMUST00000145649 Nrip1 protein_coding Interval_172201 chrX 9062756 9063418 + 0 NA promoter-TSS (ENSMUSG00000072249.3) protein_coding-promoter-TSS (ENSMUSG00000072249.3) 72 ENSMUSG00000072249.3 ENSMUSG00000072249 ENSMUST00000097029 Fthl17f protein_coding Interval_101523 chr3 3746493 3746688 + 0 NA Intergenic Intergenic -45308 ENSMUSG00000069125.2 ENSMUSG00000069125 ENSMUST00000091375 Rps24-ps2 processed_pseudogene Interval_146755 chr7 49953468 49953907 + 0 NA intron (ENSMUSG00000039728.15, intron 13 of 14) protein_coding-intron (ENSMUSG00000039728.15, intron 14 of 15) 43388 ENSMUSG00000039728.15 ENSMUSG00000039728 ENSMUST00000107605 Slc6a5 protein_coding Interval_172970 chrX 58093359 58093853 + 0 NA Intergenic Intergenic 70906 ENSMUSG00000067860.11 ENSMUSG00000067860 ENSMUST00000088629 Zic3 protein_coding Interval_14340 chr10 31053130 31053773 + 0 NA intron (ENSMUSG00000111778.1, intron 1 of 4) lincRNA-intron (ENSMUSG00000111778.1, intron 1 of 4) 12791 ENSMUSG00000111778.1 ENSMUSG00000111778 ENSMUST00000217645 Gm30676 lincRNA Interval_4714 chr1 77504605 77506410 + 0 NA intron (ENSMUSG00000026235.14, intron 2 of 15) protein_coding-intron (ENSMUSG00000026235.14, intron 3 of 17) -8739 ENSMUSG00000099141.1 ENSMUSG00000099141 ENSMUST00000184495 Mir6352 miRNA Interval_83883 chr19 5337780 5338330 + 0 NA intron (ENSMUSG00000038498.4, intron 2 of 10) protein_coding-intron (ENSMUSG00000038498.4, intron 2 of 11) 1857 ENSMUSG00000038498.4 ENSMUSG00000038498 ENSMUST00000235380 Catsper1 protein_coding Interval_108031 chr3 120641709 120642009 + 0 NA intron (ENSMUSG00000098097.7, intron 8 of 11) lincRNA-intron (ENSMUSG00000098097.7, intron 8 of 11) -31766 ENSMUSG00000089027.1 ENSMUSG00000089027 ENSMUST00000158402 Gm25013 snoRNA Interval_105023 chr3 79851850 79852893 + 0 NA intron (ENSMUSG00000027956.11, intron 1 of 5) protein_coding-intron (ENSMUSG00000027956.11, intron 1 of 1) -9459 ENSMUSG00000027956.11 ENSMUSG00000027956 ENSMUST00000194338 Tmem144 protein_coding Interval_130457 chr5 127763572 127764194 + 0 NA Intergenic Intergenic -113450 ENSMUSG00000061331.5 ENSMUSG00000061331 ENSMUST00000109542 Gm17132 unprocessed_pseudogene Interval_88012 chr19 57876107 57877487 + 0 NA intron (ENSMUSG00000054843.9, intron 26 of 28) protein_coding-intron (ENSMUSG00000054843.9, intron 26 of 28) -174370 ENSMUSG00000093757.1 ENSMUSG00000093757 ENSMUST00000176631 Mir5623 miRNA Interval_61814 chr15 84344239 84344706 + 0 NA Intergenic Intergenic 2307 ENSMUSG00000116442.1 ENSMUSG00000116442 ENSMUST00000230576 Gm5214 processed_pseudogene Interval_109994 chr3 152362107 152363477 + 0 NA intron (ENSMUSG00000025437.15, intron 6 of 23) protein_coding-intron (ENSMUSG00000025437.15, intron 6 of 23) -3484 ENSMUSG00000025437.15 ENSMUSG00000025437 ENSMUST00000198596 Usp33 protein_coding Interval_22847 chr11 16606690 16608942 + 0 NA Intergenic Intergenic 28250 ENSMUSG00000101316.1 ENSMUSG00000101316 ENSMUST00000118481 Gm12663 processed_pseudogene Interval_106832 chr3 101167018 101167884 + 0 NA Intergenic Intergenic 39948 ENSMUSG00000082415.1 ENSMUSG00000082415 ENSMUST00000120887 Gm12486 processed_pseudogene Interval_170539 chr9 108596898 108597992 + 0 NA promoter-TSS (ENSMUSG00000006675.10) protein_coding-promoter-TSS (ENSMUSG00000006675.10) 131 ENSMUSG00000006675.10 ENSMUSG00000006675 ENSMUST00000193621 P4htm protein_coding Interval_65488 chr16 22714636 22714929 + 0 NA Intergenic Intergenic -28588 ENSMUSG00000116603.1 ENSMUSG00000116603 ENSMUST00000232508 Gm8118 processed_pseudogene Interval_7526 chr1 131999067 131999652 + 0 NA intron (ENSMUSG00000100037.1, intron 2 of 2) processed_transcript-intron (ENSMUSG00000100037.1, intron 2 of 2) -18449 ENSMUSG00000026436.15 ENSMUSG00000026436 ENSMUST00000131159 Elk4 protein_coding Interval_120722 chr4 150268615 150269910 + 0 NA Intergenic Intergenic 21802 ENSMUSG00000063524.13 ENSMUSG00000063524 ENSMUST00000136310 Eno1 protein_coding Interval_132822 chr5 148107208 148107739 + 0 NA intron (ENSMUSG00000029651.16, intron 2 of 3) protein_coding-intron (ENSMUSG00000029651.16, intron 4 of 14) 76904 ENSMUSG00000066554.6 ENSMUSG00000066554 ENSMUST00000150411 Gm10167 processed_pseudogene Interval_44386 chr13 44525173 44525394 + 0 NA Intergenic Intergenic 15725 ENSMUSG00000113492.1 ENSMUSG00000113492 ENSMUST00000222493 Gm47792 lincRNA Interval_74998 chr17 59394264 59395166 + 0 NA Intergenic Intergenic -168872 ENSMUSG00000077629.1 ENSMUSG00000077629 ENSMUST00000104441 Gm23769 snoRNA Interval_110471 chr3 158968738 158968962 + 0 NA Intergenic Intergenic 8404 ENSMUSG00000097966.1 ENSMUSG00000097966 ENSMUST00000183173 Gm9423 processed_pseudogene Interval_147439 chr7 67222155 67223040 + 0 NA promoter-TSS (ENSMUSG00000043831.12) protein_coding-promoter-TSS (ENSMUSG00000043831.12) -19 ENSMUSG00000043831.12 ENSMUSG00000043831 ENSMUST00000208569 Lysmd4 protein_coding Interval_106717 chr3 99508585 99509266 + 0 NA Intergenic Intergenic 8375 ENSMUSG00000080832.4 ENSMUSG00000080832 ENSMUST00000120481 M6pr-ps processed_pseudogene Interval_124 GL456368.1 3277 4224 + 0 NA NA NA NA NA Interval_20164 chr10 115354692 115354942 + 0 NA intron (ENSMUSG00000069520.6, intron 3 of 6) protein_coding-intron (ENSMUSG00000069520.6, intron 3 of 6) 7676 ENSMUSG00000069520.6 ENSMUSG00000069520 ENSMUST00000219597 Tmem19 protein_coding Interval_87660 chr19 54061683 54061916 + 0 NA Intergenic Intergenic 16539 ENSMUSG00000033717.6 ENSMUSG00000033717 ENSMUST00000237285 Adra2a protein_coding Interval_11053 chr1 178942555 178943930 + 0 NA Intergenic Intergenic -25628 ENSMUSG00000089713.1 ENSMUSG00000089713 ENSMUST00000162545 Gm16564 antisense Interval_119409 chr4 137517912 137519261 + 0 NA intron (ENSMUSG00000028763.18, intron 22 of 96) protein_coding-intron (ENSMUSG00000028763.18, intron 22 of 96) -3873 ENSMUSG00000028763.18 ENSMUSG00000028763 ENSMUST00000155648 Hspg2 protein_coding Interval_47574 chr13 89293987 89294157 + 0 NA intron (ENSMUSG00000034488.14, intron 10 of 10) protein_coding-intron (ENSMUSG00000034488.14, intron 9 of 9) 284347 ENSMUSG00000094463.2 ENSMUSG00000094463 ENSMUST00000178288 Gm8546 processed_pseudogene Interval_35789 chr12 29675880 29676487 + 0 NA exon (ENSMUSG00000112663.1, exon 4 of 4) antisense-exon (ENSMUSG00000112663.1, exon 4 of 4) 10262 ENSMUSG00000112663.1 ENSMUSG00000112663 ENSMUST00000218114 C630031E19Rik antisense Interval_46575 chr13 67306013 67306960 + 0 NA promoter-TSS (ENSMUSG00000055341.10) protein_coding-promoter-TSS (ENSMUSG00000055341.10) 2421 ENSMUSG00000114863.1 ENSMUSG00000114863 ENSMUST00000225398 Gm48824 lincRNA Interval_91972 chr2 52095555 52096033 + 0 NA intron (ENSMUSG00000036202.16, intron 5 of 13) protein_coding-intron (ENSMUSG00000036202.16, intron 17 of 35) -16339 ENSMUSG00000036202.16 ENSMUSG00000036202 ENSMUST00000152178 Rif1 protein_coding Interval_62024 chr15 85949376 85950213 + 0 NA intron (ENSMUSG00000016028.11, intron 4 of 33) protein_coding-intron (ENSMUSG00000016028.11, intron 5 of 34) -47595 ENSMUSG00000016028.11 ENSMUSG00000016028 ENSMUST00000227450 Celsr1 protein_coding Interval_2412 chr1 39109216 39109554 + 0 NA Intergenic Intergenic -26047 ENSMUSG00000103182.1 ENSMUSG00000103182 ENSMUST00000195455 Gm37091 TEC Interval_138639 chr6 90648467 90648781 + 0 NA Intergenic Intergenic 32896 ENSMUSG00000093052.2 ENSMUSG00000093052 ENSMUST00000175311 Gm24816 miRNA Interval_147791 chr7 73572729 73573490 + 0 NA Intergenic Intergenic -14962 ENSMUSG00000101970.8 ENSMUSG00000101970 ENSMUST00000184655 1810026B05Rik processed_transcript Interval_85819 chr19 32152688 32153141 + 0 NA intron (ENSMUSG00000040451.18, intron 2 of 5) protein_coding-intron (ENSMUSG00000040451.18, intron 6 of 9) 56359 ENSMUSG00000118064.1 ENSMUSG00000118064 ENSMUST00000235377 Gm50210 sense_intronic Interval_127636 chr5 105989658 105991057 + 0 NA Intergenic Intergenic -9175 ENSMUSG00000105129.1 ENSMUSG00000105129 ENSMUST00000199576 Gm19566 processed_pseudogene Interval_155305 chr8 31119096 31119307 + 0 NA TTS (ENSMUSG00000039328.11) protein_coding-TTS (ENSMUSG00000039328.11) 7371 ENSMUSG00000039328.11 ENSMUSG00000039328 ENSMUST00000209547 Rnf122 protein_coding Interval_93330 chr2 71983070 71983883 + 0 NA intron (ENSMUSG00000049044.16, intron 1 of 5) protein_coding-intron (ENSMUSG00000049044.16, intron 1 of 30) 16316 ENSMUSG00000088297.1 ENSMUSG00000088297 ENSMUST00000157672 Gm26408 snoRNA Interval_120322 chr4 147868180 147869059 + 0 NA promoter-TSS (ENSMUSG00000029022.18) protein_coding-promoter-TSS (ENSMUSG00000029022.18) -96 ENSMUSG00000029022.18 ENSMUSG00000029022 ENSMUST00000174081 Miip protein_coding Interval_110541 chr4 3775981 3776702 + 0 NA intron (ENSMUSG00000042228.14, intron 2 of 4) protein_coding-intron (ENSMUSG00000042228.14, intron 10 of 12) 20242 ENSMUSG00000077271.1 ENSMUSG00000077271 ENSMUST00000104083 Gm22781 snoRNA Interval_147430 chr7 66987901 66988135 + 0 NA intron (ENSMUSG00000058145.16, intron 8 of 10) protein_coding-intron (ENSMUSG00000058145.16, intron 8 of 22) 6409 ENSMUSG00000108873.1 ENSMUSG00000108873 ENSMUST00000207157 Gm44609 processed_pseudogene Interval_95516 chr2 111033771 111034125 + 0 NA Intergenic Intergenic 23626 ENSMUSG00000079171.3 ENSMUSG00000079171 ENSMUST00000136950 Gm13942 lincRNA Interval_561 chr1 7352899 7353143 + 0 NA intron (ENSMUSG00000097797.6, intron 1 of 2) lincRNA-intron (ENSMUSG00000097797.6, intron 1 of 2) 37570 ENSMUSG00000102768.1 ENSMUSG00000102768 ENSMUST00000192649 Gm19002 processed_pseudogene Interval_117500 chr4 124203590 124204187 + 0 NA Intergenic Intergenic 75289 ENSMUSG00000103541.1 ENSMUSG00000103541 ENSMUST00000193103 Gm37667 TEC Interval_58735 chr15 37518922 37519827 + 0 NA intron (ENSMUSG00000115157.1, intron 6 of 7) protein_coding-intron (ENSMUSG00000051359.15, intron 4 of 6) 26618 ENSMUSG00000084382.1 ENSMUSG00000084382 ENSMUST00000118671 Gm3267 processed_pseudogene Interval_156482 chr8 48628037 48628915 + 0 NA intron (ENSMUSG00000031561.16, intron 2 of 26) protein_coding-intron (ENSMUSG00000031561.16, intron 2 of 28) 2693 ENSMUSG00000110509.1 ENSMUSG00000110509 ENSMUST00000212961 Gm45772 processed_pseudogene Interval_37205 chr12 59648387 59648714 + 0 NA Intergenic Intergenic -2384 ENSMUSG00000112851.1 ENSMUSG00000112851 ENSMUST00000219830 Gm7727 processed_pseudogene Interval_87790 chr19 55886570 55887147 + 0 NA intron (ENSMUSG00000024985.20, intron 5 of 7) protein_coding-intron (ENSMUSG00000024985.20, intron 4 of 11) 45186 ENSMUSG00000099746.1 ENSMUSG00000099746 ENSMUST00000190974 Ppnr sense_intronic Interval_13801 chr10 22644557 22645619 + 0 NA promoter-TSS (ENSMUSG00000037490.5) protein_coding-promoter-TSS (ENSMUSG00000037490.5) -3920 ENSMUSG00000037490.5 ENSMUSG00000037490 ENSMUST00000159174 Slc2a12 protein_coding Interval_82807 chr18 77150690 77151594 + 0 NA intron (ENSMUSG00000025423.16, intron 14 of 14) protein_coding-intron (ENSMUSG00000025423.16, intron 13 of 13) 35221 ENSMUSG00000073532.3 ENSMUSG00000073532 ENSMUST00000097520 Gm7276 bidirectional_promoter_lncRNA Interval_163640 chr9 22974513 22974719 + 0 NA Intergenic Intergenic -201781 ENSMUSG00000098940.1 ENSMUSG00000098940 ENSMUST00000184937 Gm27639 snRNA Interval_29862 chr11 87393839 87394595 + 0 NA intron (ENSMUSG00000007646.13, intron 5 of 9) protein_coding-intron (ENSMUSG00000007646.13, intron 5 of 8) 10289 ENSMUSG00000007646.13 ENSMUSG00000007646 ENSMUST00000129400 Rad51c protein_coding Interval_43628 chr13 34220658 34221299 + 0 NA TTS (ENSMUSG00000038267.15) protein_coding-TTS (ENSMUSG00000038267.15) 56274 ENSMUSG00000088573.1 ENSMUSG00000088573 ENSMUST00000157948 Gm24530 misc_RNA Interval_171950 chr9 122865593 122866977 + 0 NA promoter-TSS (ENSMUSG00000047036.8) protein_coding-promoter-TSS (ENSMUSG00000047036.8) -300 ENSMUSG00000047036.8 ENSMUSG00000047036 ENSMUST00000214558 Zfp445 protein_coding Interval_9611 chr1 160212345 160213553 + 0 NA promoter-TSS (ENSMUSG00000014226.10) protein_coding-promoter-TSS (ENSMUSG00000014226.10) 6 ENSMUSG00000103006.1 ENSMUSG00000103006 ENSMUST00000193962 4933417C20Rik TEC Interval_143690 chr7 14875519 14876371 + 0 NA Intergenic Intergenic 8353 ENSMUSG00000093736.1 ENSMUSG00000093736 ENSMUST00000175961 Obox4-ps38 unprocessed_pseudogene Interval_16117 chr10 60825969 60827208 + 0 NA intron (ENSMUSG00000020099.8, intron 1 of 15) protein_coding-intron (ENSMUSG00000020099.8, intron 1 of 16) 4794 ENSMUSG00000020099.8 ENSMUSG00000020099 ENSMUST00000218637 Unc5b protein_coding Interval_42379 chr13 12473612 12474192 + 0 NA exon (ENSMUSG00000095105.2, exon 6 of 6) protein_coding-exon (ENSMUSG00000095105.2, exon 6 of 6) -17379 ENSMUSG00000057554.13 ENSMUSG00000057554 ENSMUST00000152478 Lgals8 protein_coding Interval_132764 chr5 147733124 147734702 + 0 NA Intergenic Intergenic -11603 ENSMUSG00000106845.1 ENSMUSG00000106845 ENSMUST00000202338 Gm43156 lincRNA Interval_74015 chr17 46063303 46064432 + 0 NA Intergenic Intergenic 20399 ENSMUSG00000117287.1 ENSMUSG00000117287 ENSMUST00000233284 Gm36200 lincRNA Interval_94383 chr2 90652601 90653596 + 0 NA Intergenic Intergenic -32073 ENSMUSG00000051329.13 ENSMUSG00000051329 ENSMUST00000126503 Nup160 protein_coding Interval_48449 chr13 99099260 99102516 + 0 NA intron (ENSMUSG00000097848.2, intron 1 of 1) lincRNA-intron (ENSMUSG00000097848.2, intron 1 of 1) 127 ENSMUSG00000097848.2 ENSMUSG00000097848 ENSMUST00000224929 Gm807 lincRNA Interval_131499 chr5 137586670 137587217 + 0 NA TTS (ENSMUSG00000029716.13) protein_coding-TTS (ENSMUSG00000029716.13) 13748 ENSMUSG00000037221.13 ENSMUSG00000037221 ENSMUST00000196366 Mospd3 protein_coding Interval_84950 chr19 19793837 19794178 + 0 NA Intergenic Intergenic 82556 ENSMUSG00000118167.1 ENSMUSG00000118167 ENSMUST00000235148 Gm50216 lincRNA Interval_167918 chr9 74253755 74254026 + 0 NA intron (ENSMUSG00000044976.17, intron 18 of 19) protein_coding-intron (ENSMUSG00000044976.17, intron 18 of 19) -108720 ENSMUSG00000084725.2 ENSMUSG00000084725 ENSMUST00000122776 Gm24141 snRNA Interval_16497 chr10 63201011 63202245 + 0 NA intron (ENSMUSG00000020067.8, intron 1 of 19) protein_coding-intron (ENSMUSG00000020067.8, intron 1 of 19) 42525 ENSMUSG00000045391.4 ENSMUSG00000045391 ENSMUST00000054837 1700120B22Rik bidirectional_promoter_lncRNA Interval_111683 chr4 25782935 25783158 + 0 NA intron (ENSMUSG00000055373.8, intron 1 of 2) protein_coding-intron (ENSMUSG00000055373.8, intron 1 of 2) 16809 ENSMUSG00000055373.8 ENSMUSG00000055373 ENSMUST00000149875 Fut9 protein_coding Interval_10466 chr1 171142815 171143785 + 0 NA intron (ENSMUSG00000058076.12, intron 2 of 4) protein_coding-intron (ENSMUSG00000058076.12, intron 2 of 4) 7288 ENSMUSG00000058076.12 ENSMUSG00000058076 ENSMUST00000155798 Sdhc protein_coding Interval_95719 chr2 114860208 114860459 + 0 NA intron (ENSMUSG00000085222.1, intron 2 of 8) lincRNA-intron (ENSMUSG00000085222.1, intron 2 of 8) 6240 ENSMUSG00000085222.1 ENSMUSG00000085222 ENSMUST00000144368 Gm13974 lincRNA Interval_149651 chr7 100392574 100392786 + 0 NA intron (ENSMUSG00000047248.20, intron 5 of 9) protein_coding-intron (ENSMUSG00000047248.20, intron 5 of 32) -4351 ENSMUSG00000047248.20 ENSMUSG00000047248 ENSMUST00000208018 C2cd3 protein_coding Interval_130782 chr5 130355216 130355683 + 0 NA Intergenic Intergenic 29181 ENSMUSG00000052014.6 ENSMUSG00000052014 ENSMUST00000063656 A330070K13Rik protein_coding Interval_111107 chr4 12113026 12114281 + 0 NA promoter-TSS (ENSMUSG00000083246.1) processed_pseudogene-promoter-TSS (ENSMUSG00000083246.1) -631 ENSMUSG00000083246.1 ENSMUSG00000083246 ENSMUST00000120647 Gm11839 processed_pseudogene Interval_163078 chr9 15043571 15045950 + 0 NA promoter-TSS (ENSMUSG00000031934.14) protein_coding-promoter-TSS (ENSMUSG00000031934.14) -963 ENSMUSG00000031934.14 ENSMUSG00000031934 ENSMUST00000169288 Panx1 protein_coding Interval_115382 chr4 98401072 98401832 + 0 NA intron (ENSMUSG00000061859.17, intron 1 of 44) protein_coding-intron (ENSMUSG00000061859.17, intron 1 of 43) 5661 ENSMUSG00000061859.17 ENSMUSG00000061859 ENSMUST00000030290 Patj protein_coding Interval_14594 chr10 36803445 36804207 + 0 NA intron (ENSMUSG00000044499.11, intron 3 of 4) protein_coding-intron (ENSMUSG00000044499.11, intron 4 of 5) -27895 ENSMUSG00000088423.1 ENSMUSG00000088423 ENSMUST00000157798 Gm22554 snoRNA Interval_136560 chr6 55617987 55618463 + 0 NA Intergenic Intergenic 63038 ENSMUSG00000037984.9 ENSMUSG00000037984 ENSMUST00000044767 Neurod6 protein_coding Interval_34155 chr11 120948550 120949453 + 0 NA promoter-TSS (ENSMUSG00000025161.16) protein_coding-promoter-TSS (ENSMUSG00000025161.16) -80 ENSMUSG00000025161.16 ENSMUSG00000025161 ENSMUST00000134540 Slc16a3 protein_coding Interval_108180 chr3 122243061 122244130 + 0 NA Intergenic Intergenic -2393 ENSMUSG00000028124.15 ENSMUSG00000028124 ENSMUST00000176761 Gclm protein_coding Interval_165594 chr9 50038362 50038557 + 0 NA Intergenic Intergenic 83581 ENSMUSG00000111682.1 ENSMUSG00000111682 ENSMUST00000215094 Gm47543 lincRNA Interval_39939 chr12 99940984 99941416 + 0 NA intron (ENSMUSG00000021177.16, intron 14 of 15) protein_coding-intron (ENSMUSG00000021177.16, intron 13 of 14) -23299 ENSMUSG00000045404.16 ENSMUSG00000045404 ENSMUST00000049788 Kcnk13 protein_coding Interval_15142 chr10 42864039 42865183 + 0 NA promoter-TSS (ENSMUSG00000044770.14) protein_coding-promoter-TSS (ENSMUSG00000044770.14) -371 ENSMUSG00000111293.1 ENSMUSG00000111293 ENSMUST00000213985 Gm34006 antisense Interval_135641 chr6 42257384 42258069 + 0 NA Intergenic Intergenic -4233 ENSMUSG00000071506.4 ENSMUSG00000071506 ENSMUST00000095987 Tmem139 protein_coding Interval_120675 chr4 150035511 150035981 + 0 NA Intergenic Intergenic -13267 ENSMUSG00000086665.1 ENSMUSG00000086665 ENSMUST00000134236 Gm13067 lincRNA Interval_141206 chr6 125599875 125600603 + 0 NA intron (ENSMUSG00000001930.17, intron 12 of 14) protein_coding-intron (ENSMUSG00000001930.17, intron 12 of 51) 47276 ENSMUSG00000001930.17 ENSMUSG00000001930 ENSMUST00000146264 Vwf protein_coding Interval_53398 chr14 56918220 56918628 + 0 NA intron (ENSMUSG00000021945.9, intron 5 of 23) protein_coding-intron (ENSMUSG00000021945.9, intron 5 of 23) -31130 ENSMUSG00000021945.9 ENSMUSG00000021945 ENSMUST00000226025 Zmym2 protein_coding Interval_35467 chr12 22796729 22797267 + 0 NA Intergenic Intergenic 36363 ENSMUSG00000114139.1 ENSMUSG00000114139 ENSMUST00000222057 Gm20336 unprocessed_pseudogene Interval_25931 chr11 52695361 52696157 + 0 NA Intergenic Intergenic -68875 ENSMUSG00000036264.9 ENSMUSG00000036264 ENSMUST00000036796 Fstl4 protein_coding Interval_158447 chr8 83776647 83777457 + 0 NA Intergenic Intergenic 24134 ENSMUSG00000084682.1 ENSMUSG00000084682 ENSMUST00000122733 Gm22024 misc_RNA Interval_160152 chr8 106750995 106751423 + 0 NA intron (ENSMUSG00000041949.6, intron 14 of 17) protein_coding-intron (ENSMUSG00000041949.6, intron 14 of 17) 68094 ENSMUSG00000041949.6 ENSMUSG00000041949 ENSMUST00000211979 Tango6 protein_coding Interval_146595 chr7 47153240 47153647 + 0 NA Intergenic Intergenic -9121 ENSMUSG00000109200.1 ENSMUSG00000109200 ENSMUST00000207829 Gm44969 lincRNA Interval_1454 chr1 23684247 23684661 + 0 NA Intergenic Intergenic -77299 ENSMUSG00000026156.8 ENSMUSG00000026156 ENSMUST00000140583 B3gat2 protein_coding Interval_160190 chr8 107030790 107031972 + 0 NA promoter-TSS (ENSMUSG00000085464.1) antisense-promoter-TSS (ENSMUSG00000085464.1) -193 ENSMUSG00000085464.1 ENSMUSG00000085464 ENSMUST00000128476 Gm16208 antisense Interval_122088 chr5 16755555 16756964 + 0 NA Intergenic Intergenic -25189 ENSMUSG00000059179.6 ENSMUSG00000059179 ENSMUST00000073014 Gm8991 processed_pseudogene Interval_138254 chr6 86631376 86631563 + 0 NA Intergenic Intergenic 3305 ENSMUSG00000033508.7 ENSMUSG00000033508 ENSMUST00000043400 Asprv1 protein_coding Interval_79434 chr18 31877450 31878421 + 0 NA intron (ENSMUSG00000024400.16, intron 7 of 21) protein_coding-intron (ENSMUSG00000024400.16, intron 7 of 21) 33889 ENSMUSG00000044982.7 ENSMUSG00000044982 ENSMUST00000054984 Sft2d3 protein_coding Interval_66296 chr16 32950956 32951331 + 0 NA intron (ENSMUSG00000022801.13, intron 2 of 18) protein_coding-intron (ENSMUSG00000022801.13, intron 2 of 20) 27925 ENSMUSG00000091997.1 ENSMUSG00000091997 ENSMUST00000163830 Gm6611 processed_pseudogene Interval_75913 chr17 72951263 72951538 + 0 NA Intergenic Intergenic 30212 ENSMUSG00000024063.13 ENSMUSG00000024063 ENSMUST00000148556 Lbh protein_coding Interval_69713 chr16 95735824 95736787 + 0 NA Intergenic Intergenic -17995 ENSMUSG00000117167.1 ENSMUSG00000117167 ENSMUST00000233819 Gm6599 processed_pseudogene Interval_164139 chr9 31942485 31942958 + 0 NA Intergenic Intergenic -5625 ENSMUSG00000111166.1 ENSMUSG00000111166 ENSMUST00000213734 Tpi-rs4 processed_pseudogene Interval_137556 chr6 73190636 73191161 + 0 NA intron (ENSMUSG00000052861.13, intron 8 of 75) protein_coding-intron (ENSMUSG00000052861.13, intron 9 of 76) 21765 ENSMUSG00000052861.13 ENSMUSG00000052861 ENSMUST00000114038 Dnah6 protein_coding Interval_76484 chr17 80516951 80518486 + 0 NA Intergenic Intergenic -35746 ENSMUSG00000117375.1 ENSMUSG00000117375 ENSMUST00000234757 Gm33373 antisense Interval_99554 chr2 163122144 163123027 + 0 NA promoter-TSS (ENSMUSG00000086152.1) lincRNA-promoter-TSS (ENSMUSG00000086152.1) -21 ENSMUSG00000086152.1 ENSMUSG00000086152 ENSMUST00000144092 Gm11454 lincRNA Interval_127535 chr5 104893383 104894386 + 0 NA Intergenic Intergenic -34091 ENSMUSG00000072774.10 ENSMUSG00000072774 ENSMUST00000191135 Zfp951 protein_coding Interval_18802 chr10 90974515 90974752 + 0 NA Intergenic Intergenic -31108 ENSMUSG00000087966.1 ENSMUSG00000087966 ENSMUST00000157341 Gm25390 snRNA Interval_158316 chr8 81085750 81087067 + 0 NA Intergenic Intergenic 25074 ENSMUSG00000109980.1 ENSMUSG00000109980 ENSMUST00000210771 Gm45538 lincRNA Interval_154533 chr8 19044247 19045617 + 0 NA Intergenic Intergenic -6486 ENSMUSG00000080726.2 ENSMUSG00000080726 ENSMUST00000118433 Gm15366 processed_pseudogene Interval_12625 chr10 3972900 3974066 + 0 NA intron (ENSMUSG00000040675.17, intron 1 of 27) protein_coding-intron (ENSMUSG00000040675.17, intron 1 of 27) -18888 ENSMUSG00000082247.1 ENSMUSG00000082247 ENSMUST00000119524 Gm16074 processed_pseudogene Interval_22811 chr11 16206531 16206828 + 0 NA Intergenic Intergenic -30250 ENSMUSG00000082410.1 ENSMUSG00000082410 ENSMUST00000119734 Gm12011 processed_pseudogene Interval_62609 chr15 95576719 95577454 + 0 NA Intergenic Intergenic 29579 ENSMUSG00000089560.1 ENSMUSG00000089560 ENSMUST00000158935 Gm24668 snRNA Interval_47785 chr13 92733116 92734159 + 0 NA Intergenic Intergenic 14275 ENSMUSG00000114631.1 ENSMUSG00000114631 ENSMUST00000223855 Gm5199 processed_pseudogene Interval_115154 chr4 91817701 91818166 + 0 NA Intergenic Intergenic -11378 ENSMUSG00000100863.1 ENSMUSG00000100863 ENSMUST00000122162 Gm12669 processed_pseudogene Interval_151210 chr7 119673116 119674066 + 0 NA Intergenic Intergenic -16435 ENSMUSG00000047026.9 ENSMUSG00000047026 ENSMUST00000047045 Acsm4 protein_coding Interval_35771 chr12 29159370 29159655 + 0 NA intron (ENSMUSG00000113986.1, intron 1 of 3) lincRNA-intron (ENSMUSG00000113986.1, intron 2 of 7) 17583 ENSMUSG00000113986.1 ENSMUSG00000113986 ENSMUST00000222225 Gm31333 lincRNA Interval_13958 chr10 25029009 25029702 + 0 NA intron (ENSMUSG00000111970.1, intron 2 of 3) lincRNA-intron (ENSMUSG00000111970.1, intron 1 of 1) -24004 ENSMUSG00000112597.1 ENSMUSG00000112597 ENSMUST00000218577 Gm4777 processed_pseudogene Interval_35623 chr12 26047766 26049808 + 0 NA Intergenic Intergenic -101529 ENSMUSG00000113611.1 ENSMUSG00000113611 ENSMUST00000220612 Gm47750 processed_pseudogene Interval_124504 chr5 49623613 49623987 + 0 NA Intergenic Intergenic 71642 ENSMUSG00000083477.2 ENSMUSG00000083477 ENSMUST00000120352 Gm5555 processed_pseudogene Interval_166342 chr9 58454448 58456401 + 0 NA intron (ENSMUSG00000097651.2, intron 1 of 2) lincRNA-intron (ENSMUSG00000097651.2, intron 1 of 2) 302 ENSMUSG00000097651.2 ENSMUSG00000097651 ENSMUST00000181967 4930461G14Rik lincRNA Interval_113757 chr4 58391386 58392853 + 0 NA Intergenic Intergenic 48979 ENSMUSG00000093293.1 ENSMUSG00000093293 ENSMUST00000175552 Mir3095 miRNA Interval_160074 chr8 106198512 106199937 + 0 NA TTS (ENSMUSG00000031904.5) protein_coding-TTS (ENSMUSG00000031904.5) 11709 ENSMUSG00000033106.6 ENSMUSG00000033106 ENSMUST00000212397 Slc7a6os protein_coding Interval_121698 chr5 5480679 5480873 + 0 NA Intergenic Intergenic -1696 ENSMUSG00000079666.8 ENSMUSG00000079666 ENSMUST00000156282 1700015F17Rik protein_coding Interval_103973 chr3 55763273 55764586 + 0 NA intron (ENSMUSG00000027799.12, intron 2 of 18) protein_coding-intron (ENSMUSG00000027799.12, intron 41 of 57) -18581 ENSMUSG00000056947.5 ENSMUSG00000056947 ENSMUST00000075422 Mab21l1 protein_coding Interval_131019 chr5 134582373 134583871 + 0 NA intron (ENSMUSG00000023104.9, intron 1 of 5) protein_coding-intron (ENSMUSG00000023104.9, intron 1 of 10) 1756 ENSMUSG00000023104.9 ENSMUSG00000023104 ENSMUST00000201464 Rfc2 protein_coding Interval_104578 chr3 68481656 68481824 + 0 NA intron (ENSMUSG00000027777.15, intron 1 of 7) protein_coding-intron (ENSMUSG00000027777.15, intron 1 of 7) -11751 ENSMUSG00000027777.15 ENSMUSG00000027777 ENSMUST00000182360 Schip1 protein_coding Interval_51495 chr14 28509295 28511563 + 0 NA promoter-TSS (ENSMUSG00000021994.15) protein_coding-promoter-TSS (ENSMUSG00000021994.15) -189 ENSMUSG00000021994.15 ENSMUSG00000021994 ENSMUST00000146192 Wnt5a protein_coding Interval_107941 chr3 117054204 117054498 + 0 NA Intergenic Intergenic 23414 ENSMUSG00000028009.7 ENSMUSG00000028009 ENSMUST00000029642 1700061I17Rik lincRNA Interval_44045 chr13 40461481 40462872 + 0 NA Intergenic Intergenic -34012 ENSMUSG00000114248.1 ENSMUSG00000114248 ENSMUST00000226074 Gm8352 processed_pseudogene Interval_157838 chr8 74840217 74840681 + 0 NA Intergenic Intergenic -6512 ENSMUSG00000079011.9 ENSMUSG00000079011 ENSMUST00000137218 Gm11033 lincRNA Interval_72159 chr17 28340770 28341676 + 0 NA intron (ENSMUSG00000002249.21, intron 2 of 12) protein_coding-intron (ENSMUSG00000002249.21, intron 2 of 12) 9562 ENSMUSG00000002249.21 ENSMUSG00000002249 ENSMUST00000233330 Tead3 protein_coding Interval_130094 chr5 124222324 124223641 + 0 NA intron (ENSMUSG00000029406.15, intron 1 of 24) protein_coding-intron (ENSMUSG00000029406.15, intron 1 of 25) -6743 ENSMUSG00000090220.1 ENSMUSG00000090220 ENSMUST00000161697 Pitpnm2os1 antisense Interval_169077 chr9 91725109 91725321 + 0 NA Intergenic Intergenic 32931 ENSMUSG00000104216.1 ENSMUSG00000104216 ENSMUST00000194999 Gm37987 TEC Interval_105966 chr3 90347841 90348406 + 0 NA intron (ENSMUSG00000042390.9, intron 3 of 7) protein_coding-intron (ENSMUSG00000042390.9, intron 1 of 9) -3295 ENSMUSG00000042390.9 ENSMUSG00000042390 ENSMUST00000206907 Gatad2b protein_coding Interval_22766 chr11 15064200 15064524 + 0 NA Intergenic Intergenic 15204 ENSMUSG00000084183.1 ENSMUSG00000084183 ENSMUST00000121361 Gm12009 processed_pseudogene Interval_151075 chr7 118344789 118345308 + 0 NA Intergenic Intergenic 15562 ENSMUSG00000108856.1 ENSMUSG00000108856 ENSMUST00000208337 Gm35309 lincRNA Interval_27013 chr11 62372571 62375107 + 0 NA intron (ENSMUSG00000018501.17, intron 4 of 4) protein_coding-intron (ENSMUSG00000018501.17, intron 19 of 45) 9515 ENSMUSG00000018501.17 ENSMUSG00000018501 ENSMUST00000141447 Ncor1 protein_coding Interval_39768 chr12 97872556 97873027 + 0 NA promoter-TSS (ENSMUSG00000111885.1) lincRNA-promoter-TSS (ENSMUSG00000111885.1) -271 ENSMUSG00000111885.1 ENSMUSG00000111885 ENSMUST00000218234 Gm35326 lincRNA Interval_130989 chr5 134427395 134428347 + 0 NA intron (ENSMUSG00000023079.14, intron 1 of 3) protein_coding-intron (ENSMUSG00000023079.14, intron 1 of 30) 11632 ENSMUSG00000077437.1 ENSMUSG00000077437 ENSMUST00000104249 n-R5s178 rRNA Interval_152778 chr7 137468097 137468929 + 0 NA TTS (ENSMUSG00000031068.8) protein_coding-TTS (ENSMUSG00000031068.8) 30848 ENSMUSG00000031068.8 ENSMUSG00000031068 ENSMUST00000211598 Glrx3 protein_coding Interval_60522 chr15 74627177 74627739 + 0 NA intron (ENSMUSG00000022603.9, intron 3 of 10) protein_coding-intron (ENSMUSG00000022603.9, intron 7 of 26) -19230 ENSMUSG00000022603.9 ENSMUSG00000022603 ENSMUST00000175931 Mroh4 protein_coding Interval_29034 chr11 80008360 80008700 + 0 NA intron (ENSMUSG00000017548.15, intron 4 of 14) protein_coding-intron (ENSMUSG00000017548.15, intron 5 of 15) 15424 ENSMUSG00000017548.15 ENSMUSG00000017548 ENSMUST00000144188 Suz12 protein_coding Interval_59564 chr15 55306407 55309412 + 0 NA promoter-TSS (ENSMUSG00000022371.16) protein_coding-promoter-TSS (ENSMUSG00000022371.16) -45306 ENSMUSG00000095792.1 ENSMUSG00000095792 ENSMUST00000179457 Gm26296 snRNA Interval_53993 chr14 64163663 64164376 + 0 NA intron (ENSMUSG00000054733.9, intron 5 of 5) protein_coding-intron (ENSMUSG00000054733.9, intron 10 of 10) 47705 ENSMUSG00000114284.1 ENSMUSG00000114284 ENSMUST00000225122 9630015K15Rik antisense Interval_128336 chr5 112614361 112614549 + 0 NA Intergenic Intergenic -24459 ENSMUSG00000097962.7 ENSMUSG00000097962 ENSMUST00000182949 1700034G24Rik lincRNA Interval_100365 chr2 168661535 168662530 + 0 NA TTS (ENSMUSG00000027546.15) protein_coding-TTS (ENSMUSG00000027546.15) -21273 ENSMUSG00000105496.1 ENSMUSG00000105496 ENSMUST00000200215 Mir7004 miRNA Interval_125756 chr5 73911579 73912988 + 0 NA promoter-TSS (ENSMUSG00000107027.1) lincRNA-promoter-TSS (ENSMUSG00000107027.1) -613 ENSMUSG00000107027.1 ENSMUSG00000107027 ENSMUST00000202487 1700019F05Rik lincRNA Interval_33636 chr11 117664249 117666179 + 0 NA intron (ENSMUSG00000025571.13, intron 1 of 21) protein_coding-intron (ENSMUSG00000025571.13, intron 1 of 21) 53967 ENSMUSG00000054418.6 ENSMUSG00000054418 ENSMUST00000155384 2900041M22Rik processed_transcript Interval_79567 chr18 33806637 33808115 + 0 NA intron (ENSMUSG00000024376.7, intron 7 of 7) protein_coding-intron (ENSMUSG00000024376.7, intron 19 of 23) 12212 ENSMUSG00000092819.1 ENSMUSG00000092819 ENSMUST00000175078 Gm23639 snoRNA Interval_37812 chr12 72180000 72180228 + 0 NA intron (ENSMUSG00000021086.5, intron 2 of 20) protein_coding-intron (ENSMUSG00000021086.5, intron 2 of 20) 4915 ENSMUSG00000021086.5 ENSMUSG00000021086 ENSMUST00000021494 Ccdc175 protein_coding Interval_94303 chr2 87721086 87721390 + 0 NA Intergenic Intergenic -8059 ENSMUSG00000075150.2 ENSMUSG00000075150 ENSMUST00000099850 Olfr1137 protein_coding Interval_13660 chr10 20628719 20629180 + 0 NA exon (ENSMUSG00000091730.1, exon 1 of 1) processed_pseudogene-exon (ENSMUSG00000091730.1, exon 1 of 1) 3314 ENSMUSG00000091730.1 ENSMUSG00000091730 ENSMUST00000171194 Gm17230 processed_pseudogene Interval_90474 chr2 30686927 30687668 + 0 NA intron (ENSMUSG00000086405.1, intron 2 of 3) lincRNA-intron (ENSMUSG00000086405.1, intron 2 of 3) -17389 ENSMUSG00000087268.1 ENSMUSG00000087268 ENSMUST00000144704 Gm14486 lincRNA Interval_83896 chr19 5424107 5425688 + 0 NA promoter-TSS (ENSMUSG00000024914.16) protein_coding-promoter-TSS (ENSMUSG00000024914.16) -138 ENSMUSG00000024914.16 ENSMUSG00000024914 ENSMUST00000134697 Drap1 protein_coding Interval_71906 chr17 26923273 26925933 + 0 NA exon (ENSMUSG00000024301.10, exon 7 of 11) protein_coding-exon (ENSMUSG00000024301.10, exon 7 of 11) 3641 ENSMUSG00000098586.1 ENSMUSG00000098586 ENSMUST00000184919 Gm27775 miRNA Interval_165030 chr9 44036799 44037228 + 0 NA intron (ENSMUSG00000111229.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000111229.1, intron 1 of 2) 4046 ENSMUSG00000111229.1 ENSMUSG00000111229 ENSMUST00000215913 Gm39323 lincRNA Interval_114216 chr4 68257156 68257364 + 0 NA Intergenic Intergenic 46030 ENSMUSG00000081231.1 ENSMUSG00000081231 ENSMUST00000120941 Tcp1-ps1 processed_pseudogene Interval_119209 chr4 136218659 136220713 + 0 NA intron (ENSMUSG00000036995.7, intron 1 of 24) protein_coding-intron (ENSMUSG00000036995.7, intron 1 of 24) 13321 ENSMUSG00000036995.7 ENSMUSG00000036995 ENSMUST00000047526 Asap3 protein_coding Interval_19831 chr10 109903743 109904140 + 0 NA promoter-TSS (ENSMUSG00000020181.18) protein_coding-promoter-TSS (ENSMUSG00000020181.18) 133838 ENSMUSG00000102410.1 ENSMUSG00000102410 ENSMUST00000192526 Gm36935 TEC Interval_5450 chr1 88923800 88924894 + 0 NA Intergenic Intergenic -7972 ENSMUSG00000101333.1 ENSMUSG00000101333 ENSMUST00000188327 Gm4753 processed_pseudogene Interval_7131 chr1 126916448 126916776 + 0 NA Intergenic Intergenic -39997 ENSMUSG00000101600.1 ENSMUSG00000101600 ENSMUST00000188266 4930599A14Rik lincRNA Interval_164400 chr9 36751659 36751967 + 0 NA TTS (ENSMUSG00000032116.18) protein_coding-TTS (ENSMUSG00000032116.18) 15796 ENSMUSG00000032116.18 ENSMUSG00000032116 ENSMUST00000137994 Stt3a protein_coding Interval_64827 chr16 16223069 16223305 + 0 NA intron (ENSMUSG00000041957.15, intron 1 of 2) protein_coding-intron (ENSMUSG00000041957.15, intron 1 of 12) 9869 ENSMUSG00000041957.15 ENSMUSG00000041957 ENSMUST00000039408 Pkp2 protein_coding Interval_46153 chr13 62056032 62056566 + 0 NA intron (ENSMUSG00000114036.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000114036.1, intron 1 of 1) 20877 ENSMUSG00000074868.2 ENSMUSG00000074868 ENSMUST00000099450 Gm6478 processed_pseudogene Interval_81853 chr18 65300656 65301494 + 0 NA intron (ENSMUSG00000032845.16, intron 1 of 6) protein_coding-intron (ENSMUSG00000032845.16, intron 5 of 12) 3381 ENSMUSG00000032845.16 ENSMUSG00000032845 ENSMUST00000182629 Alpk2 protein_coding Interval_132526 chr5 145751665 145752223 + 0 NA Intergenic Intergenic -8601 ENSMUSG00000105661.1 ENSMUSG00000105661 ENSMUST00000198575 Gm43626 processed_pseudogene Interval_129796 chr5 122401130 122401753 + 0 NA intron (ENSMUSG00000029465.14, intron 1 of 5) protein_coding-intron (ENSMUSG00000029465.14, intron 2 of 6) 4574 ENSMUSG00000029465.14 ENSMUSG00000029465 ENSMUST00000126247 Arpc3 protein_coding Interval_78856 chr18 20994256 20994835 + 0 NA Intergenic Intergenic -7550 ENSMUSG00000024317.15 ENSMUSG00000024317 ENSMUST00000234169 Rnf138 protein_coding Interval_49051 chr13 107432120 107433113 + 0 NA Intergenic Intergenic -17887 ENSMUSG00000049233.7 ENSMUSG00000049233 ENSMUST00000061241 Apoo-ps processed_pseudogene Interval_91230 chr2 36136007 36137098 + 0 NA promoter-TSS (ENSMUSG00000026889.12) protein_coding-promoter-TSS (ENSMUSG00000026889.12) 24 ENSMUSG00000026889.12 ENSMUSG00000026889 ENSMUST00000142809 Rbm18 protein_coding Interval_142148 chr6 137628626 137628872 + 0 NA intron (ENSMUSG00000015766.14, intron 1 of 3) protein_coding-intron (ENSMUSG00000015766.14, intron 1 of 21) -35174 ENSMUSG00000107878.1 ENSMUSG00000107878 ENSMUST00000203153 Gm44106 TEC Interval_172233 chrX 11482137 11482358 + 0 NA Intergenic Intergenic -119107 ENSMUSG00000083492.1 ENSMUSG00000083492 ENSMUST00000121327 Gm14515 processed_pseudogene Interval_125611 chr5 72647337 72648872 + 0 NA intron (ENSMUSG00000067219.9, intron 1 of 4) protein_coding-intron (ENSMUSG00000067219.9, intron 1 of 5) 291 ENSMUSG00000067219.9 ENSMUSG00000067219 ENSMUST00000197772 Nipal1 protein_coding Interval_122047 chr5 14578714 14579000 + 0 NA intron (ENSMUSG00000061601.15, intron 3 of 22) protein_coding-intron (ENSMUSG00000061601.15, intron 3 of 24) 15519 ENSMUSG00000106491.1 ENSMUSG00000106491 ENSMUST00000199783 Gm42446 TEC Interval_140035 chr6 113556682 113557030 + 0 NA intron (ENSMUSG00000034023.16, intron 18 of 42) protein_coding-intron (ENSMUSG00000034023.16, intron 18 of 43) 8009 ENSMUSG00000107786.1 ENSMUSG00000107786 ENSMUST00000204537 Gm44232 processed_pseudogene Interval_116024 chr4 107074429 107074749 + 0 NA intron (ENSMUSG00000028621.17, intron 4 of 5) protein_coding-intron (ENSMUSG00000028621.17, intron 3 of 4) 7601 ENSMUSG00000028621.17 ENSMUSG00000028621 ENSMUST00000127916 Cyb5rl protein_coding Interval_164057 chr9 31210824 31212490 + 0 NA exon (ENSMUSG00000031996.17, exon 1 of 17) protein_coding-exon (ENSMUSG00000031996.17, exon 1 of 17) -50335 ENSMUSG00000031996.17 ENSMUSG00000031996 ENSMUST00000213273 Aplp2 protein_coding Interval_110158 chr3 153867564 153867839 + 0 NA intron (ENSMUSG00000005493.15, intron 9 of 12) protein_coding-intron (ENSMUSG00000005493.15, intron 16 of 19) 2894 ENSMUSG00000088764.1 ENSMUSG00000088764 ENSMUST00000158139 Gm24395 snoRNA Interval_148234 chr7 80023923 80025488 + 0 NA promoter-TSS (ENSMUSG00000048897.15) protein_coding-promoter-TSS (ENSMUSG00000048897.15) -3109 ENSMUSG00000048897.15 ENSMUSG00000048897 ENSMUST00000206104 Zfp710 protein_coding Interval_973 chr1 13573506 13574627 + 0 NA intron (ENSMUSG00000025935.10, intron 6 of 10) protein_coding-intron (ENSMUSG00000025935.10, intron 6 of 10) 15809 ENSMUSG00000025935.10 ENSMUSG00000025935 ENSMUST00000188377 Tram1 protein_coding Interval_11193 chr1 180022885 180024741 + 0 NA TTS (ENSMUSG00000102194.1) TEC-TTS (ENSMUSG00000102194.1) 2751 ENSMUSG00000102194.1 ENSMUSG00000102194 ENSMUST00000191822 Gm38169 TEC Interval_148227 chr7 79987553 79987771 + 0 NA Intergenic Intergenic 38475 ENSMUSG00000077059.1 ENSMUSG00000077059 ENSMUST00000103871 Gm24541 miRNA Interval_23557 chr11 23357173 23357386 + 0 NA intron (ENSMUSG00000056342.16, intron 10 of 79) protein_coding-intron (ENSMUSG00000056342.16, intron 10 of 79) 50384 ENSMUSG00000056342.16 ENSMUSG00000056342 ENSMUST00000125701 Usp34 protein_coding Interval_72404 chr17 29632115 29632970 + 0 NA promoter-TSS (ENSMUSG00000090083.11) protein_coding-promoter-TSS (ENSMUSG00000090083.11) -976 ENSMUSG00000090083.11 ENSMUSG00000090083 ENSMUST00000172800 Rnf8 protein_coding Interval_120676 chr4 150039298 150042035 + 0 NA Intergenic Intergenic -8347 ENSMUSG00000086665.1 ENSMUSG00000086665 ENSMUST00000134236 Gm13067 lincRNA Interval_109108 chr3 135846148 135846358 + 0 NA intron (ENSMUSG00000053897.15, intron 2 of 8) protein_coding-intron (ENSMUSG00000053897.15, intron 1 of 7) -5984 ENSMUSG00000106306.4 ENSMUSG00000106306 ENSMUST00000199058 4933401H06Rik processed_transcript Interval_13286 chr10 14132252 14132806 + 0 NA exon (ENSMUSG00000015501.10, exon 4 of 9) protein_coding-exon (ENSMUSG00000015501.10, exon 4 of 9) 21917 ENSMUSG00000101014.1 ENSMUSG00000101014 ENSMUST00000189331 Gm28289 antisense Interval_17341 chr10 75983368 75984087 + 0 NA intron (ENSMUSG00000033255.8, intron 3 of 7) protein_coding-intron (ENSMUSG00000033255.8, intron 6 of 13) 9641 ENSMUSG00000033255.8 ENSMUSG00000033255 ENSMUST00000134234 Gm5134 protein_coding Interval_146849 chr7 53293090 53294160 + 0 NA Intergenic Intergenic 366555 ENSMUSG00000070203.1 ENSMUSG00000070203 ENSMUST00000093693 Gm22444 snRNA Interval_22529 chr11 11512070 11512338 + 0 NA intron (ENSMUSG00000020191.11, intron 5 of 5) protein_coding-intron (ENSMUSG00000020191.11, intron 8 of 8) -45217 ENSMUSG00000087452.1 ENSMUSG00000087452 ENSMUST00000146304 Gm11998 antisense Interval_75460 chr17 66713084 66713314 + 0 NA intron (ENSMUSG00000033278.10, intron 21 of 30) protein_coding-intron (ENSMUSG00000033278.10, intron 23 of 32) -1255 ENSMUSG00000114563.1 ENSMUSG00000114563 ENSMUST00000224424 1700016K05Rik antisense Interval_103956 chr3 55477739 55477967 + 0 NA TTS (ENSMUSG00000027797.15) protein_coding-TTS (ENSMUSG00000027797.15) -5643 ENSMUSG00000094962.1 ENSMUSG00000094962 ENSMUST00000179544 Gm21954 protein_coding Interval_31435 chr11 100646010 100646747 + 0 NA intron (ENSMUSG00000014198.15, intron 2 of 2) protein_coding-intron (ENSMUSG00000014198.15, intron 1 of 7) -3261 ENSMUSG00000109112.1 ENSMUSG00000109112 ENSMUST00000207052 Gm44544 unitary_pseudogene Interval_123112 chr5 29770835 29771525 + 0 NA intron (ENSMUSG00000029131.14, intron 8 of 8) protein_coding-intron (ENSMUSG00000029131.14, intron 8 of 9) 23857 ENSMUSG00000106558.1 ENSMUSG00000106558 ENSMUST00000197149 Gm5552 processed_pseudogene Interval_165785 chr9 52992214 52992699 + 0 NA Intergenic Intergenic -171732 ENSMUSG00000111693.1 ENSMUSG00000111693 ENSMUST00000213563 Gm47986 processed_pseudogene Interval_144833 chr7 28519632 28520399 + 0 NA intron (ENSMUSG00000109336.1, intron 1 of 12) protein_coding-intron (ENSMUSG00000109336.1, intron 1 of 12) 2717 ENSMUSG00000118574.1 ENSMUSG00000118574 ENSMUST00000239126 AC136456.1 unprocessed_pseudogene Interval_173347 chrX 82741687 82741882 + 0 NA Intergenic Intergenic 16654 ENSMUSG00000083587.1 ENSMUSG00000083587 ENSMUST00000120777 Gm14741 processed_pseudogene Interval_69392 chr16 92650307 92650865 + 0 NA intron (ENSMUSG00000022952.17, intron 3 of 5) protein_coding-intron (ENSMUSG00000022952.17, intron 5 of 7) 37772 ENSMUSG00000097139.3 ENSMUSG00000097139 ENSMUST00000180989 Gm26626 antisense Interval_34464 chr12 4401776 4402305 + 0 NA intron (ENSMUSG00000020647.10, intron 1 of 22) protein_coding-intron (ENSMUSG00000020647.10, intron 2 of 22) 7558 ENSMUSG00000084597.1 ENSMUSG00000084597 ENSMUST00000122648 Gm22343 misc_RNA Interval_7231 chr1 128060609 128061303 + 0 NA intron (ENSMUSG00000036086.16, intron 2 of 2) protein_coding-intron (ENSMUSG00000036086.16, intron 2 of 20) 22387 ENSMUSG00000058603.10 ENSMUSG00000058603 ENSMUST00000121497 Rpl28-ps1 processed_pseudogene Interval_38573 chr12 80197347 80199142 + 0 NA intron (ENSMUSG00000015143.15, intron 4 of 4) protein_coding-intron (ENSMUSG00000015143.15, intron 4 of 20) -6816 ENSMUSG00000112830.1 ENSMUSG00000112830 ENSMUST00000220316 Gm47765 processed_transcript Interval_40084 chr12 101059327 101059693 + 0 NA intron (ENSMUSG00000041846.15, intron 3 of 3) protein_coding-intron (ENSMUSG00000041846.15, intron 3 of 14) -15965 ENSMUSG00000041846.15 ENSMUSG00000041846 ENSMUST00000222302 Ppp4r3a protein_coding Interval_132350 chr5 144383805 144384344 + 0 NA intron (ENSMUSG00000047843.16, intron 3 of 3) protein_coding-intron (ENSMUSG00000047843.16, intron 3 of 3) -22528 ENSMUSG00000083574.1 ENSMUSG00000083574 ENSMUST00000118354 Gm15709 processed_pseudogene Interval_25194 chr11 45080345 45080847 + 0 NA Intergenic Intergenic 36332 ENSMUSG00000084773.1 ENSMUSG00000084773 ENSMUST00000143869 Gm12159 lincRNA Interval_151737 chr7 126344780 126345873 + 0 NA Intergenic Intergenic 6271 ENSMUSG00000108417.1 ENSMUSG00000108417 ENSMUST00000205858 Gm30928 lincRNA Interval_160139 chr8 106667717 106668596 + 0 NA intron (ENSMUSG00000000303.12, intron 15 of 16) protein_coding-intron (ENSMUSG00000000303.12, intron 15 of 15) -14959 ENSMUSG00000041949.6 ENSMUSG00000041949 ENSMUST00000211979 Tango6 protein_coding Interval_95386 chr2 107611566 107612969 + 0 NA Intergenic Intergenic -11728 ENSMUSG00000052005.8 ENSMUSG00000052005 ENSMUST00000090043 Gm9864 pseudogene Interval_146149 chr7 44359100 44361216 + 0 NA TTS (ENSMUSG00000008028.15) protein_coding-TTS (ENSMUSG00000008028.15) -2406 ENSMUSG00000108509.1 ENSMUSG00000108509 ENSMUST00000205409 Gm44780 antisense Interval_139044 chr6 94545493 94545807 + 0 NA intron (ENSMUSG00000045100.11, intron 4 of 6) protein_coding-intron (ENSMUSG00000045100.11, intron 5 of 9) 45101 ENSMUSG00000045100.11 ENSMUSG00000045100 ENSMUST00000203484 Slc25a26 protein_coding Interval_99674 chr2 164108489 164109329 + 0 NA intron (ENSMUSG00000018209.15, intron 2 of 2) protein_coding-intron (ENSMUSG00000018209.15, intron 9 of 10) -26794 ENSMUSG00000085538.1 ENSMUSG00000085538 ENSMUST00000149285 Gm11455 antisense Interval_113690 chr4 57660091 57660937 + 0 NA intron (ENSMUSG00000089945.13, intron 2 of 8) protein_coding-intron (ENSMUSG00000089945.13, intron 3 of 10) 22691 ENSMUSG00000089945.13 ENSMUSG00000089945 ENSMUST00000150412 Pakap protein_coding Interval_115443 chr4 98979618 98980020 + 0 NA intron (ENSMUSG00000028556.15, intron 28 of 47) protein_coding-intron (ENSMUSG00000028556.15, intron 29 of 48) -53360 ENSMUSG00000028553.12 ENSMUSG00000028553 ENSMUST00000125546 Angptl3 protein_coding Interval_77374 chr17 88305594 88307398 + 0 NA promoter-TSS (ENSMUSG00000117497.1) lincRNA-promoter-TSS (ENSMUSG00000117497.1) -1118 ENSMUSG00000117497.1 ENSMUSG00000117497 ENSMUST00000234925 1700116H05Rik lincRNA Interval_67230 chr16 44592092 44592659 + 0 NA Intergenic Intergenic -33478 ENSMUSG00000022687.12 ENSMUSG00000022687 ENSMUST00000114634 Boc protein_coding Interval_95453 chr2 109677173 109678659 + 0 NA intron (ENSMUSG00000048482.14, intron 1 of 1) protein_coding-intron (ENSMUSG00000048482.14, intron 1 of 1) -1325 ENSMUSG00000109604.1 ENSMUSG00000109604 ENSMUST00000209925 Gm45346 antisense Interval_45987 chr13 59802560 59802754 + 0 NA intron (ENSMUSG00000035248.9, intron 3 of 18) protein_coding-intron (ENSMUSG00000035248.9, intron 11 of 27) 19931 ENSMUSG00000035248.9 ENSMUSG00000035248 ENSMUST00000225987 Tut7 protein_coding Interval_118360 chr4 130878395 130879189 + 0 NA Intergenic Intergenic -20912 ENSMUSG00000077381.1 ENSMUSG00000077381 ENSMUST00000104193 Gm22660 snoRNA Interval_87090 chr19 46058425 46058720 + 0 NA intron (ENSMUSG00000055491.14, intron 1 of 2) protein_coding-intron (ENSMUSG00000055491.14, intron 1 of 13) 1708 ENSMUSG00000055491.14 ENSMUSG00000055491 ENSMUST00000146882 Pprc1 protein_coding Interval_144027 chr7 19041086 19041361 + 0 NA intron (ENSMUSG00000023118.15, intron 12 of 22) protein_coding-intron (ENSMUSG00000023118.15, intron 11 of 26) -16172 ENSMUSG00000040866.13 ENSMUSG00000040866 ENSMUST00000144991 Rsph6a protein_coding Interval_66276 chr16 32812765 32815528 + 0 NA Intergenic Intergenic -3669 ENSMUSG00000094430.2 ENSMUSG00000094430 ENSMUST00000179384 Smbd1 protein_coding Interval_71774 chr17 26007731 26008109 + 0 NA intron (ENSMUSG00000037098.18, intron 4 of 11) protein_coding-intron (ENSMUSG00000037098.18, intron 4 of 11) 10540 ENSMUSG00000037098.18 ENSMUSG00000037098 ENSMUST00000126306 Rab11fip3 protein_coding Interval_34640 chr12 8287914 8289739 + 0 NA Intergenic Intergenic 4868 ENSMUSG00000112441.1 ENSMUSG00000112441 ENSMUST00000217967 Gm48898 lincRNA Interval_18695 chr10 89395537 89396286 + 0 NA Intergenic Intergenic 37931 ENSMUSG00000074802.11 ENSMUSG00000074802 ENSMUST00000219073 Gas2l3 protein_coding Interval_33354 chr11 116096692 116097275 + 0 NA Intergenic Intergenic -9988 ENSMUSG00000034341.17 ENSMUSG00000034341 ENSMUST00000129532 Wbp2 protein_coding Interval_129581 chr5 121118651 121118897 + 0 NA Intergenic Intergenic 24861 ENSMUSG00000043733.14 ENSMUSG00000043733 ENSMUST00000148871 Ptpn11 protein_coding Interval_66954 chr16 38791786 38792092 + 0 NA intron (ENSMUSG00000049436.5, intron 1 of 7) protein_coding-intron (ENSMUSG00000049436.5, intron 1 of 7) -11596 ENSMUSG00000049436.5 ENSMUSG00000049436 ENSMUST00000232536 Upk1b protein_coding Interval_159690 chr8 97402745 97403798 + 0 NA Intergenic Intergenic 25839 ENSMUSG00000081111.3 ENSMUSG00000081111 ENSMUST00000119397 Gm5913 processed_pseudogene Interval_91630 chr2 45001603 45002118 + 0 NA TTS (ENSMUSG00000026872.18) protein_coding-TTS (ENSMUSG00000026872.18) 21317 ENSMUSG00000092679.1 ENSMUSG00000092679 ENSMUST00000174938 Mir5129 miRNA Interval_10825 chr1 175668767 175670651 + 0 NA intron (ENSMUSG00000026525.9, intron 1 of 3) protein_coding-intron (ENSMUSG00000026525.9, intron 1 of 3) 22921 ENSMUSG00000078185.3 ENSMUSG00000078185 ENSMUST00000211489 Chml protein_coding Interval_75981 chr17 74131356 74131606 + 0 NA Intergenic Intergenic -32190 ENSMUSG00000117195.1 ENSMUSG00000117195 ENSMUST00000232871 Gm49881 processed_pseudogene Interval_109086 chr3 135648014 135648558 + 0 NA intron (ENSMUSG00000028163.17, intron 5 of 24) protein_coding-intron (ENSMUSG00000028163.17, intron 6 of 24) 6280 ENSMUSG00000106149.1 ENSMUSG00000106149 ENSMUST00000196513 Gm43430 TEC Interval_77489 chr17 90088157 90088698 + 0 NA promoter-TSS (ENSMUSG00000024109.18) protein_coding-promoter-TSS (ENSMUSG00000024109.18) -111642 ENSMUSG00000117635.1 ENSMUSG00000117635 ENSMUST00000234603 Gm41653 lincRNA Interval_77526 chr17 90808824 90810108 + 0 NA intron (ENSMUSG00000024109.18, intron 1 of 12) protein_coding-intron (ENSMUSG00000024109.18, intron 4 of 20) -15460 ENSMUSG00000092549.1 ENSMUSG00000092549 ENSMUST00000173765 Gm20491 processed_pseudogene Interval_115822 chr4 105062909 105063196 + 0 NA intron (ENSMUSG00000028518.8, intron 2 of 8) protein_coding-intron (ENSMUSG00000028518.8, intron 2 of 8) 46838 ENSMUSG00000028518.8 ENSMUSG00000028518 ENSMUST00000030243 Prkaa2 protein_coding Interval_142560 chr6 143272067 143272589 + 0 NA intron (ENSMUSG00000072679.10, intron 4 of 4) lincRNA-intron (ENSMUSG00000072679.10, intron 3 of 3) 26435 ENSMUSG00000072679.10 ENSMUSG00000072679 ENSMUST00000160951 D6Ertd474e lincRNA Interval_40253 chr12 102779147 102780349 + 0 NA Intergenic Intergenic -15036 ENSMUSG00000114106.1 ENSMUSG00000114106 ENSMUST00000221771 Gm47042 processed_pseudogene Interval_142374 chr6 141128688 141128971 + 0 NA Intergenic Intergenic -9218 ENSMUSG00000107462.1 ENSMUSG00000107462 ENSMUST00000203682 Gm7384 processed_pseudogene Interval_125136 chr5 64806085 64806446 + 0 NA TTS (ENSMUSG00000106205.1) TEC-TTS (ENSMUSG00000106205.1) 2251 ENSMUSG00000106205.1 ENSMUSG00000106205 ENSMUST00000198074 C230096K16Rik TEC Interval_82716 chr18 76160768 76161734 + 0 NA Intergenic Intergenic -9301 ENSMUSG00000098276.1 ENSMUSG00000098276 ENSMUST00000184549 Mir6358 miRNA Interval_42318 chr13 12042483 12043228 + 0 NA intron (ENSMUSG00000021313.16, intron 1 of 2) protein_coding-intron (ENSMUSG00000021313.16, intron 1 of 104) 9200 ENSMUSG00000112947.1 ENSMUSG00000112947 ENSMUST00000220599 Gm47493 TEC Interval_159064 chr8 89271302 89272774 + 0 NA Intergenic Intergenic -84478 ENSMUSG00000069962.3 ENSMUSG00000069962 ENSMUST00000093326 Gm5356 processed_pseudogene Interval_75118 chr17 63622300 63622973 + 0 NA promoter-TSS (ENSMUSG00000117225.1) processed_pseudogene-promoter-TSS (ENSMUSG00000117225.1) -380 ENSMUSG00000117225.1 ENSMUSG00000117225 ENSMUST00000233876 Gm49862 processed_pseudogene Interval_79154 chr18 25099626 25099852 + 0 NA intron (ENSMUSG00000034295.10, intron 16 of 24) protein_coding-intron (ENSMUSG00000034295.10, intron 18 of 26) 68955 ENSMUSG00000024269.11 ENSMUSG00000024269 ENSMUST00000115817 Tpgs2 protein_coding Interval_130431 chr5 127583646 127584180 + 0 NA Intergenic Intergenic 5163 ENSMUSG00000106015.1 ENSMUSG00000106015 ENSMUST00000200582 Gm42980 lincRNA Interval_59839 chr15 59647532 59649848 + 0 NA promoter-TSS (ENSMUSG00000032501.9) protein_coding-promoter-TSS (ENSMUSG00000032501.9) 37 ENSMUSG00000032501.9 ENSMUSG00000032501 ENSMUST00000118228 Trib1 protein_coding Interval_62145 chr15 88091392 88091584 + 0 NA Intergenic Intergenic 17744 ENSMUSG00000116350.1 ENSMUSG00000116350 ENSMUST00000230760 Gm35772 lincRNA Interval_43871 chr13 37751068 37752216 + 0 NA Intergenic Intergenic -10106 ENSMUSG00000114800.1 ENSMUSG00000114800 ENSMUST00000224394 Gm31600 lincRNA Interval_79833 chr18 35454738 35455670 + 0 NA intron (ENSMUSG00000024357.10, intron 1 of 2) protein_coding-intron (ENSMUSG00000024357.10, intron 1 of 9) -33900 ENSMUSG00000117731.1 ENSMUSG00000117731 ENSMUST00000237123 Gm50145 antisense Interval_36489 chr12 46014063 46014289 + 0 NA Intergenic Intergenic 29833 ENSMUSG00000064800.1 ENSMUSG00000064800 ENSMUST00000082866 Gm24948 snoRNA Interval_99558 chr2 163167770 163167973 + 0 NA Intergenic Intergenic -11765 ENSMUSG00000086036.1 ENSMUSG00000086036 ENSMUST00000136371 Gm14254 lincRNA Interval_173382 chrX 86018608 86019481 + 0 NA Intergenic Intergenic 14125 ENSMUSG00000080266.2 ENSMUSG00000080266 ENSMUST00000116562 Gm14772 processed_pseudogene Interval_51237 chr14 25457221 25460897 + 0 NA promoter-TSS (ENSMUSG00000007817.15) protein_coding-promoter-TSS (ENSMUSG00000007817.15) -165 ENSMUSG00000007817.15 ENSMUSG00000007817 ENSMUST00000162546 Zmiz1 protein_coding Interval_144805 chr7 28356875 28357318 + 0 NA Intergenic Intergenic 5588 ENSMUSG00000077711.1 ENSMUSG00000077711 ENSMUST00000104523 AF357399 snoRNA Interval_140704 chr6 120686193 120686494 + 0 NA intron (ENSMUSG00000071226.11, intron 1 of 1) protein_coding-intron (ENSMUSG00000071226.11, intron 1 of 18) -49413 ENSMUSG00000071226.11 ENSMUSG00000071226 ENSMUST00000143563 Cecr2 protein_coding Interval_168469 chr9 81546027 81547366 + 0 NA Intergenic Intergenic -85722 ENSMUSG00000097466.8 ENSMUSG00000097466 ENSMUST00000183781 D430036J16Rik antisense Interval_148138 chr7 79446653 79446858 + 0 NA exon (ENSMUSG00000039176.17, exon 23 of 23) protein_coding-exon (ENSMUSG00000039176.17, exon 23 of 23) 5167 ENSMUSG00000039176.17 ENSMUSG00000039176 ENSMUST00000125562 Polg protein_coding Interval_168462 chr9 81224558 81225202 + 0 NA Intergenic Intergenic -207922 ENSMUSG00000099085.1 ENSMUSG00000099085 ENSMUST00000184817 Gm8151 processed_pseudogene Interval_52683 chr14 48552390 48553997 + 0 NA intron (ENSMUSG00000115725.1, intron 1 of 4) lincRNA-intron (ENSMUSG00000115725.1, intron 1 of 1) 15202 ENSMUSG00000115725.1 ENSMUSG00000115725 ENSMUST00000227361 4930572G02Rik lincRNA Interval_114239 chr4 69786435 69787520 + 0 NA Intergenic Intergenic -66970 ENSMUSG00000085627.2 ENSMUSG00000085627 ENSMUST00000119005 Gm11222 processed_pseudogene Interval_37433 chr12 68562942 68564106 + 0 NA Intergenic Intergenic 16877 ENSMUSG00000113503.1 ENSMUSG00000113503 ENSMUST00000221958 Gm47490 processed_pseudogene Interval_161340 chr8 119847284 119847877 + 0 NA Intergenic Intergenic -14689 ENSMUSG00000031828.9 ENSMUSG00000031828 ENSMUST00000034287 Klhl36 protein_coding Interval_19017 chr10 93812253 93813463 + 0 NA Intergenic Intergenic 5560 ENSMUSG00000096598.1 ENSMUSG00000096598 ENSMUST00000178842 Gm26239 snRNA Interval_19292 chr10 96190039 96190254 + 0 NA Intergenic Intergenic 25815 ENSMUSG00000094523.1 ENSMUSG00000094523 ENSMUST00000175297 Gm22913 miRNA Interval_30160 chr11 90001780 90003228 + 0 NA intron (ENSMUSG00000020553.8, intron 1 of 5) protein_coding-intron (ENSMUSG00000020553.8, intron 1 of 5) 390 ENSMUSG00000020553.8 ENSMUSG00000020553 ENSMUST00000020864 Pctp protein_coding Interval_5260 chr1 87035619 87036879 + 0 NA promoter-TSS (ENSMUSG00000103984.1) TEC-promoter-TSS (ENSMUSG00000103984.1) -474 ENSMUSG00000103984.1 ENSMUSG00000103984 ENSMUST00000195625 Gm37447 TEC Interval_112530 chr4 42898648 42899576 + 0 NA Intergenic Intergenic -17548 ENSMUSG00000036062.13 ENSMUSG00000036062 ENSMUST00000131234 Phf24 protein_coding Interval_89332 chr2 19406053 19407290 + 0 NA Intergenic Intergenic -21375 ENSMUSG00000109733.1 ENSMUSG00000109733 ENSMUST00000209205 Gm33940 lincRNA Interval_6692 chr1 118799458 118799887 + 0 NA Intergenic Intergenic -10464 ENSMUSG00000100040.1 ENSMUSG00000100040 ENSMUST00000190981 Gm28467 processed_pseudogene Interval_123877 chr5 36222932 36223214 + 0 NA intron (ENSMUSG00000029093.14, intron 3 of 4) protein_coding-intron (ENSMUSG00000029093.14, intron 2 of 26) 19052 ENSMUSG00000043430.5 ENSMUSG00000043430 ENSMUST00000052224 Psapl1 protein_coding Interval_8489 chr1 140042378 140042639 + 0 NA intron (ENSMUSG00000103691.1, intron 1 of 1) processed_pseudogene-intron (ENSMUSG00000103691.1, intron 1 of 1) 6521 ENSMUSG00000103691.1 ENSMUSG00000103691 ENSMUST00000195133 Gm38019 processed_pseudogene Interval_28269 chr11 74794269 74795108 + 0 NA intron (ENSMUSG00000010554.14, intron 5 of 9) protein_coding-intron (ENSMUSG00000010554.14, intron 5 of 10) -8636 ENSMUSG00000010554.14 ENSMUSG00000010554 ENSMUST00000134571 Mettl16 protein_coding Interval_82981 chr18 80148519 80148807 + 0 NA intron (ENSMUSG00000053950.10, intron 1 of 3) protein_coding-intron (ENSMUSG00000053950.10, intron 1 of 3) 2819 ENSMUSG00000053950.10 ENSMUSG00000053950 ENSMUST00000066743 Adnp2 protein_coding Interval_170952 chr9 113190220 113190692 + 0 NA promoter-TSS (ENSMUSG00000111235.1) lincRNA-promoter-TSS (ENSMUSG00000111235.1) -641 ENSMUSG00000111235.1 ENSMUSG00000111235 ENSMUST00000213839 Gm4657 lincRNA Interval_121236 chr4 154287325 154287527 + 0 NA promoter-TSS (ENSMUSG00000029032.12) protein_coding-promoter-TSS (ENSMUSG00000029032.12) 14237 ENSMUSG00000029032.12 ENSMUSG00000029032 ENSMUST00000152947 Arhgef16 protein_coding Interval_32452 chr11 107615928 107618509 + 0 NA intron (ENSMUSG00000020721.16, intron 13 of 32) protein_coding-intron (ENSMUSG00000020721.16, intron 12 of 31) -20504 ENSMUSG00000098497.1 ENSMUSG00000098497 ENSMUST00000185044 Mir6932 miRNA Interval_65623 chr16 24325032 24325851 + 0 NA intron (ENSMUSG00000115852.2, intron 3 of 4) transcribed_processed_pseudogene-intron (ENSMUSG00000115852.2, intron 3 of 4) 44791 ENSMUSG00000116785.1 ENSMUSG00000116785 ENSMUST00000231939 Gm41434 processed_pseudogene Interval_30548 chr11 95056539 95058074 + 0 NA TTS (ENSMUSG00000001507.16) protein_coding-TTS (ENSMUSG00000001507.16) -16431 ENSMUSG00000038967.13 ENSMUSG00000038967 ENSMUST00000155857 Pdk2 protein_coding Interval_169945 chr9 103127328 103128181 + 0 NA intron (ENSMUSG00000032549.7, intron 1 of 3) protein_coding-intron (ENSMUSG00000032549.7, intron 1 of 7) 7386 ENSMUSG00000102461.1 ENSMUSG00000102461 ENSMUST00000195473 Gm37166 TEC Interval_37738 chr12 71525813 71526697 + 0 NA intron (ENSMUSG00000113630.1, intron 2 of 5) lincRNA-intron (ENSMUSG00000113630.1, intron 2 of 5) 37970 ENSMUSG00000113630.1 ENSMUSG00000113630 ENSMUST00000220948 4930404H11Rik lincRNA Interval_169887 chr9 102761506 102761785 + 0 NA Intergenic Intergenic 4864 ENSMUSG00000102204.1 ENSMUSG00000102204 ENSMUST00000192388 Gm36958 TEC Interval_109607 chr3 145092667 145092988 + 0 NA intron (ENSMUSG00000036960.10, intron 3 of 12) protein_coding-intron (ENSMUSG00000036960.10, intron 3 of 13) 6279 ENSMUSG00000036960.10 ENSMUSG00000036960 ENSMUST00000197121 Clca2 protein_coding Interval_126300 chr5 86299505 86299815 + 0 NA Intergenic Intergenic -10400 ENSMUSG00000061184.8 ENSMUSG00000061184 ENSMUST00000196462 Tmprss11c protein_coding Interval_125262 chr5 65742544 65743710 + 0 NA Intergenic Intergenic 20739 ENSMUSG00000106978.1 ENSMUSG00000106978 ENSMUST00000202069 N4bp2os processed_transcript Interval_157315 chr8 69231298 69231691 + 0 NA TTS (ENSMUSG00000059897.5) protein_coding-TTS (ENSMUSG00000059897.5) -5702 ENSMUSG00000110538.1 ENSMUSG00000110538 ENSMUST00000212090 Gm33178 processed_pseudogene Interval_10433 chr1 170843226 170844915 + 0 NA intron (ENSMUSG00000026663.6, intron 4 of 15) protein_coding-intron (ENSMUSG00000026663.6, intron 4 of 15) -11199 ENSMUSG00000096547.1 ENSMUSG00000096547 ENSMUST00000179933 Gm25235 snRNA Interval_26441 chr11 57874509 57874705 + 0 NA Intergenic Intergenic -6289 ENSMUSG00000084223.1 ENSMUSG00000084223 ENSMUST00000119500 Gm12244 processed_pseudogene Interval_56650 chr14 121147640 121147901 + 0 NA intron (ENSMUSG00000025555.14, intron 1 of 7) protein_coding-intron (ENSMUSG00000025555.14, intron 2 of 26) 45691 ENSMUSG00000025555.14 ENSMUSG00000025555 ENSMUST00000137971 Farp1 protein_coding Interval_84469 chr19 11379805 11380509 + 0 NA intron (ENSMUSG00000101389.1, intron 2 of 6) protein_coding-intron (ENSMUSG00000101389.1, intron 2 of 6) 4634 ENSMUSG00000101389.1 ENSMUSG00000101389 ENSMUST00000188995 Ms4a4a protein_coding Interval_152335 chr7 131966458 131967590 + 0 NA exon (ENSMUSG00000040125.4, exon 1 of 3) protein_coding-exon (ENSMUSG00000040125.4, exon 1 of 3) 564 ENSMUSG00000040125.4 ENSMUSG00000040125 ENSMUST00000045840 Gpr26 protein_coding Interval_45032 chr13 51631201 51632973 + 0 NA Intergenic Intergenic -13145 ENSMUSG00000062248.5 ENSMUSG00000062248 ENSMUST00000075853 Cks2 protein_coding Interval_76950 chr17 85120567 85121199 + 0 NA intron (ENSMUSG00000071037.6, intron 3 of 10) protein_coding-intron (ENSMUSG00000071037.6, intron 3 of 10) 30277 ENSMUSG00000071037.6 ENSMUSG00000071037 ENSMUST00000234501 Camkmt protein_coding Interval_110273 chr3 155309517 155310485 + 0 NA Intergenic Intergenic -33278 ENSMUSG00000103511.1 ENSMUSG00000103511 ENSMUST00000193089 Gm5285 processed_pseudogene Interval_134862 chr6 32780484 32781356 + 0 NA Intergenic Intergenic -28632 ENSMUSG00000106873.1 ENSMUSG00000106873 ENSMUST00000202626 BC049739 lincRNA Interval_160122 chr8 106592095 106592927 + 0 NA intron (ENSMUSG00000099139.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000099139.1, intron 1 of 2) 5368 ENSMUSG00000099139.1 ENSMUSG00000099139 ENSMUST00000183365 1110028F18Rik lincRNA Interval_120010 chr4 141357728 141358251 + 0 NA promoter-TSS (ENSMUSG00000084238.1) processed_pseudogene-promoter-TSS (ENSMUSG00000084238.1) -898 ENSMUSG00000084238.1 ENSMUSG00000084238 ENSMUST00000118041 Gm13076 processed_pseudogene Interval_30717 chr11 96102274 96103114 + 0 NA exon (ENSMUSG00000006056.13, exon 5 of 6) protein_coding-exon (ENSMUSG00000006056.13, exon 5 of 6) 9268 ENSMUSG00000006056.13 ENSMUSG00000006056 ENSMUST00000097162 Calcoco2 protein_coding Interval_70178 chr17 5984716 5985166 + 0 NA intron (ENSMUSG00000023805.17, intron 1 of 16) protein_coding-intron (ENSMUSG00000023805.17, intron 1 of 25) -23093 ENSMUSG00000023805.17 ENSMUSG00000023805 ENSMUST00000126881 Synj2 protein_coding Interval_618 chr1 8958203 8958397 + 0 NA intron (ENSMUSG00000025909.16, intron 4 of 4) protein_coding-intron (ENSMUSG00000025909.16, intron 4 of 4) 5321 ENSMUSG00000066693.2 ENSMUSG00000066693 ENSMUST00000085919 Gm7493 processed_pseudogene Interval_131964 chr5 141234082 141234553 + 0 NA Intergenic Intergenic 34138 ENSMUSG00000083382.1 ENSMUSG00000083382 ENSMUST00000118634 Gm6433 processed_pseudogene Interval_85786 chr19 31113509 31114336 + 0 NA TTS (ENSMUSG00000118011.1) processed_pseudogene-TTS (ENSMUSG00000118011.1) 1376 ENSMUSG00000118011.1 ENSMUSG00000118011 ENSMUST00000235353 Gm50266 processed_pseudogene Interval_9678 chr1 160970703 160970904 + 0 NA exon (ENSMUSG00000040423.11, exon 20 of 20) protein_coding-exon (ENSMUSG00000040423.11, exon 20 of 20) -7885 ENSMUSG00000026715.12 ENSMUSG00000026715 ENSMUST00000194455 Serpinc1 protein_coding Interval_111211 chr4 14881173 14883022 + 0 NA intron (ENSMUSG00000028221.3, intron 1 of 6) protein_coding-intron (ENSMUSG00000028221.3, intron 1 of 6) 18021 ENSMUSG00000028221.3 ENSMUSG00000028221 ENSMUST00000029875 Pip4p2 protein_coding Interval_10913 chr1 176958442 176958662 + 0 NA intron (ENSMUSG00000026504.17, intron 17 of 18) protein_coding-intron (ENSMUSG00000026504.17, intron 16 of 17) -15684 ENSMUSG00000103251.1 ENSMUSG00000103251 ENSMUST00000191687 Gm37519 TEC Interval_33620 chr11 117564295 117564607 + 0 NA Intergenic Intergenic 40848 ENSMUSG00000085419.1 ENSMUSG00000085419 ENSMUST00000132261 Gm11734 lincRNA Interval_93040 chr2 69749503 69749757 + 0 NA TTS (ENSMUSG00000042133.16) protein_coding-TTS (ENSMUSG00000042133.16) -11841 ENSMUSG00000082345.1 ENSMUSG00000082345 ENSMUST00000120658 Gm13622 processed_pseudogene Interval_164374 chr9 36494452 36496473 + 0 NA Intergenic Intergenic 13166 ENSMUSG00000098949.1 ENSMUSG00000098949 ENSMUST00000184837 Gm27160 processed_pseudogene Interval_155225 chr8 28083378 28083656 + 0 NA exon (ENSMUSG00000110372.1, exon 1 of 1) processed_pseudogene-exon (ENSMUSG00000110372.1, exon 1 of 1) 749 ENSMUSG00000110343.1 ENSMUSG00000110343 ENSMUST00000210185 Gm45751 TEC Interval_152081 chr7 128925026 128925502 + 0 NA intron (ENSMUSG00000108600.1, intron 4 of 5) lincRNA-intron (ENSMUSG00000108600.1, intron 4 of 5) 72757 ENSMUSG00000108540.1 ENSMUSG00000108540 ENSMUST00000206199 Gm4768 processed_pseudogene Interval_84721 chr19 15942563 15943725 + 0 NA promoter-TSS (ENSMUSG00000090147.1) processed_pseudogene-promoter-TSS (ENSMUSG00000090147.1) -466 ENSMUSG00000090147.1 ENSMUSG00000090147 ENSMUST00000159873 Gm3329 processed_pseudogene Interval_113192 chr4 49466012 49467913 + 0 NA intron (ENSMUSG00000070985.3, intron 1 of 1) protein_coding-intron (ENSMUSG00000070985.3, intron 2 of 3) 6917 ENSMUSG00000070985.3 ENSMUSG00000070985 ENSMUST00000150392 Acnat1 protein_coding Interval_4204 chr1 71617342 71617827 + 0 NA intron (ENSMUSG00000026193.15, intron 23 of 43) protein_coding-intron (ENSMUSG00000026193.15, intron 23 of 45) -35304 ENSMUSG00000073652.10 ENSMUSG00000073652 ENSMUST00000125934 Apol7d antisense Interval_44796 chr13 48694262 48695304 + 0 NA Intergenic Intergenic 31785 ENSMUSG00000021381.4 ENSMUSG00000021381 ENSMUST00000021813 Barx1 protein_coding Interval_10685 chr1 172782830 172783094 + 0 NA intron (ENSMUSG00000037942.5, intron 1 of 1) protein_coding-intron (ENSMUSG00000037942.5, intron 1 of 1) 1517 ENSMUSG00000102430.1 ENSMUSG00000102430 ENSMUST00000193740 Gm38051 processed_pseudogene Interval_100525 chr2 169914767 169915854 + 0 NA intron (ENSMUSG00000047907.11, intron 1 of 1) protein_coding-intron (ENSMUSG00000047907.11, intron 1 of 1) 30417 ENSMUSG00000047907.11 ENSMUSG00000047907 ENSMUST00000140699 Tshz2 protein_coding Interval_60059 chr15 64331152 64331589 + 0 NA intron (ENSMUSG00000022377.16, intron 2 of 30) protein_coding-intron (ENSMUSG00000022377.16, intron 2 of 30) -2353 ENSMUSG00000115646.1 ENSMUSG00000115646 ENSMUST00000228336 Gm10926 TEC Interval_162221 chr8 126098835 126099086 + 0 NA Intergenic Intergenic -38436 ENSMUSG00000110437.1 ENSMUSG00000110437 ENSMUST00000212698 Gm45876 TEC Interval_91929 chr2 51638060 51638503 + 0 NA Intergenic Intergenic 10770 ENSMUSG00000056115.2 ENSMUSG00000056115 ENSMUST00000070028 Tas2r134 protein_coding Interval_91682 chr2 47371473 47371900 + 0 NA Intergenic Intergenic -170298 ENSMUSG00000092853.1 ENSMUSG00000092853 ENSMUST00000175112 Gm25959 miRNA Interval_19468 chr10 99667845 99668612 + 0 NA Intergenic Intergenic -1286 ENSMUSG00000112810.1 ENSMUSG00000112810 ENSMUST00000219218 Gm35101 lincRNA Interval_95252 chr2 105223206 105224935 + 0 NA promoter-TSS (ENSMUSG00000055312.2) protein_coding-promoter-TSS (ENSMUSG00000055312.2) -272 ENSMUSG00000055312.2 ENSMUSG00000055312 ENSMUST00000131060 Them7 protein_coding Interval_132445 chr5 144956991 144957415 + 0 NA intron (ENSMUSG00000038780.14, intron 1 of 18) protein_coding-intron (ENSMUSG00000038780.14, intron 1 of 17) -59209 ENSMUSG00000038780.14 ENSMUSG00000038780 ENSMUST00000198621 Smurf1 protein_coding Interval_47880 chr13 94131028 94131287 + 0 NA intron (ENSMUSG00000045312.12, intron 2 of 2) protein_coding-intron (ENSMUSG00000045312.12, intron 2 of 3) 8960 ENSMUSG00000087319.1 ENSMUSG00000087319 ENSMUST00000134284 Gm15907 lincRNA Interval_44370 chr13 44362074 44363690 + 0 NA TTS (ENSMUSG00000112936.1) lincRNA-TTS (ENSMUSG00000112936.1) 28235 ENSMUSG00000112936.1 ENSMUSG00000112936 ENSMUST00000222879 Gm33958 lincRNA Interval_33866 chr11 119080866 119081994 + 0 NA TTS (ENSMUSG00000039989.7) protein_coding-TTS (ENSMUSG00000039989.7) 4791 ENSMUSG00000039989.7 ENSMUSG00000039989 ENSMUST00000145058 Cbx4 protein_coding Interval_171182 chr9 115020090 115020366 + 0 NA intron (ENSMUSG00000040875.12, intron 1 of 11) protein_coding-intron (ENSMUSG00000040875.12, intron 1 of 11) 21612 ENSMUSG00000040875.12 ENSMUSG00000040875 ENSMUST00000182413 Osbpl10 protein_coding Interval_51657 chr14 31163515 31164705 + 0 NA intron (ENSMUSG00000042286.13, intron 1 of 17) protein_coding-intron (ENSMUSG00000042286.13, intron 1 of 68) -21113 ENSMUSG00000042286.13 ENSMUSG00000042286 ENSMUST00000159532 Stab1 protein_coding Interval_130032 chr5 123809722 123810665 + 0 NA intron (ENSMUSG00000029414.11, intron 53 of 63) protein_coding-intron (ENSMUSG00000029414.11, intron 53 of 63) 55306 ENSMUSG00000045502.6 ENSMUSG00000045502 ENSMUST00000057145 Hcar2 protein_coding Interval_171702 chr9 120264180 120264371 + 0 NA TTS (ENSMUSG00000111498.1) lincRNA-TTS (ENSMUSG00000111498.1) 3631 ENSMUSG00000111498.1 ENSMUSG00000111498 ENSMUST00000217104 Gm47059 lincRNA Interval_132047 chr5 142482680 142482950 + 0 NA Intergenic Intergenic 4754 ENSMUSG00000029576.17 ENSMUSG00000029576 ENSMUST00000129212 Radil protein_coding Interval_83484 chr18 86816148 86816447 + 0 NA Intergenic Intergenic 36546 ENSMUSG00000118328.1 ENSMUSG00000118328 ENSMUST00000237262 Gm46615 processed_pseudogene Interval_80368 chr18 40209332 40209655 + 0 NA intron (ENSMUSG00000024487.5, intron 4 of 5) protein_coding-intron (ENSMUSG00000024487.5, intron 4 of 5) 9850 ENSMUSG00000024487.5 ENSMUSG00000024487 ENSMUST00000237176 Yipf5 protein_coding Interval_125940 chr5 76028346 76029405 + 0 NA Intergenic Intergenic -14223 ENSMUSG00000106756.1 ENSMUSG00000106756 ENSMUST00000201402 Gm32780 lincRNA Interval_174352 chrX 147253314 147254156 + 0 NA Intergenic Intergenic 95525 ENSMUSG00000065450.1 ENSMUSG00000065450 ENSMUST00000083516 Mir448 miRNA Interval_75091 chr17 63245654 63246546 + 0 NA intron (ENSMUSG00000023965.13, intron 3 of 5) protein_coding-intron (ENSMUSG00000023965.13, intron 6 of 8) 43362 ENSMUSG00000088853.1 ENSMUSG00000088853 ENSMUST00000158228 Gm24730 snoRNA Interval_72074 chr17 27855884 27857283 + 0 NA promoter-TSS (ENSMUSG00000039512.12) protein_coding-promoter-TSS (ENSMUSG00000039512.12) -23 ENSMUSG00000039512.12 ENSMUSG00000039512 ENSMUST00000233409 Uhrf1bp1 protein_coding Interval_105109 chr3 81367226 81368102 + 0 NA Intergenic Intergenic 37908 ENSMUSG00000102223.1 ENSMUSG00000102223 ENSMUST00000193327 Gm37300 processed_pseudogene Interval_29425 chr11 83925511 83925834 + 0 NA Intergenic Intergenic -20583 ENSMUSG00000020677.7 ENSMUSG00000020677 ENSMUST00000130982 Ddx52 protein_coding Interval_81491 chr18 61130298 61130606 + 0 NA TTS (ENSMUSG00000024622.8) protein_coding-TTS (ENSMUSG00000024622.8) 8161 ENSMUSG00000089125.1 ENSMUSG00000089125 ENSMUST00000158500 Gm26403 snRNA Interval_76928 chr17 85007584 85007787 + 0 NA intron (ENSMUSG00000061130.13, intron 5 of 5) protein_coding-intron (ENSMUSG00000061130.13, intron 5 of 5) 14005 ENSMUSG00000061130.13 ENSMUSG00000061130 ENSMUST00000234851 Ppm1b protein_coding Interval_169927 chr9 103007517 103008892 + 0 NA promoter-TSS (ENSMUSG00000032548.14) protein_coding-promoter-TSS (ENSMUSG00000032548.14) 50 ENSMUSG00000032548.14 ENSMUSG00000032548 ENSMUST00000188664 Slco2a1 protein_coding Interval_13472 chr10 18493915 18494598 + 0 NA intron (ENSMUSG00000039835.16, intron 2 of 6) protein_coding-intron (ENSMUSG00000039835.16, intron 2 of 6) 51808 ENSMUSG00000019853.6 ENSMUSG00000019853 ENSMUST00000214548 Hebp2 protein_coding Interval_10460 chr1 171112872 171114360 + 0 NA promoter-TSS (ENSMUSG00000026649.14) protein_coding-promoter-TSS (ENSMUSG00000026649.14) -9558 ENSMUSG00000026649.14 ENSMUSG00000026649 ENSMUST00000124157 Cfap126 protein_coding Interval_107393 chr3 107252232 107252543 + 0 NA Intergenic Intergenic -15126 ENSMUSG00000070368.9 ENSMUSG00000070368 ENSMUST00000049852 Prok1 protein_coding Interval_142898 chr6 146782370 146783154 + 0 NA exon (ENSMUSG00000107788.1, exon 1 of 1) processed_pseudogene-exon (ENSMUSG00000107788.1, exon 1 of 1) 293 ENSMUSG00000107788.1 ENSMUSG00000107788 ENSMUST00000203844 Gm6266 processed_pseudogene Interval_33789 chr11 118515645 118516615 + 0 NA intron (ENSMUSG00000025576.17, intron 3 of 13) protein_coding-intron (ENSMUSG00000025576.17, intron 4 of 14) -8777 ENSMUSG00000025576.17 ENSMUSG00000025576 ENSMUST00000134774 Rbfox3 protein_coding Interval_83869 chr19 5206617 5206887 + 0 NA intron (ENSMUSG00000024855.10, intron 2 of 4) protein_coding-intron (ENSMUSG00000024855.10, intron 1 of 23) -5449 ENSMUSG00000098803.1 ENSMUSG00000098803 ENSMUST00000183577 Gm27468 miRNA Interval_123246 chr5 30878485 30879688 + 0 NA TTS (ENSMUSG00000038828.13) protein_coding-TTS (ENSMUSG00000038828.13) -8258 ENSMUSG00000107086.1 ENSMUSG00000107086 ENSMUST00000202534 Gm43808 TEC Interval_8206 chr1 136490116 136490335 + 0 NA exon (ENSMUSG00000041498.13, exon 14 of 30) protein_coding-exon (ENSMUSG00000041498.13, exon 14 of 30) -17184 ENSMUSG00000099337.1 ENSMUSG00000099337 ENSMUST00000088648 Gm29486 processed_pseudogene Interval_80120 chr18 37732520 37733621 + 0 NA exon (ENSMUSG00000103749.1, exon 1 of 4) protein_coding-exon (ENSMUSG00000103749.1, exon 1 of 4) 2016 ENSMUSG00000103749.1 ENSMUSG00000103749 ENSMUST00000193006 Pcdhgb5 protein_coding Interval_28416 chr11 75732455 75733981 + 0 NA promoter-TSS (ENSMUSG00000020849.13) protein_coding-promoter-TSS (ENSMUSG00000020849.13) -18386 ENSMUSG00000020849.13 ENSMUSG00000020849 ENSMUST00000155057 Ywhae protein_coding Interval_132533 chr5 145906119 145907644 + 0 NA Intergenic Intergenic 11997 ENSMUSG00000105405.1 ENSMUSG00000105405 ENSMUST00000196880 Gm42431 processed_pseudogene Interval_28743 chr11 78031719 78033098 + 0 NA promoter-TSS (ENSMUSG00000020834.17) protein_coding-promoter-TSS (ENSMUSG00000020834.17) 59 ENSMUSG00000020834.17 ENSMUSG00000020834 ENSMUST00000092881 Dhrs13 protein_coding Interval_44338 chr13 43849778 43850025 + 0 NA Intergenic Intergenic 7463 ENSMUSG00000114192.1 ENSMUSG00000114192 ENSMUST00000220913 Gm33115 lincRNA Interval_24399 chr11 32966939 32967146 + 0 NA Intergenic Intergenic 17257 ENSMUSG00000077836.2 ENSMUSG00000077836 ENSMUST00000104646 Gm26052 miRNA Interval_22101 chr11 6351986 6352390 + 0 NA exon (ENSMUSG00000020456.17, exon 20 of 23) protein_coding-exon (ENSMUSG00000020456.17, exon 20 of 23) -44541 ENSMUSG00000041164.15 ENSMUSG00000041164 ENSMUST00000124588 Zmiz2 protein_coding Interval_131573 chr5 138200836 138201230 + 0 NA Intergenic Intergenic 6153 ENSMUSG00000089783.2 ENSMUSG00000089783 ENSMUST00000160126 Gm454 transcribed_unprocessed_pseudogene Interval_79834 chr18 35467485 35468680 + 0 NA intron (ENSMUSG00000024357.10, intron 1 of 2) protein_coding-intron (ENSMUSG00000024357.10, intron 1 of 9) -21022 ENSMUSG00000117731.1 ENSMUSG00000117731 ENSMUST00000237123 Gm50145 antisense Interval_149098 chr7 93179070 93179568 + 0 NA exon (ENSMUSG00000087412.4, exon 2 of 2) transcribed_processed_pseudogene-exon (ENSMUSG00000087412.4, exon 2 of 2) 326 ENSMUSG00000087412.4 ENSMUSG00000087412 ENSMUST00000140687 Gm15501 transcribed_processed_pseudogene Interval_109132 chr3 136506778 136506979 + 0 NA Intergenic Intergenic -57529 ENSMUSG00000099508.1 ENSMUSG00000099508 ENSMUST00000189233 1700030L20Rik lincRNA Interval_36296 chr12 40856495 40858157 + 0 NA Intergenic Intergenic -18211 ENSMUSG00000113435.1 ENSMUSG00000113435 ENSMUST00000221545 Gm19441 processed_pseudogene Interval_168655 chr9 85472857 85473497 + 0 NA TTS (ENSMUSG00000065274.1) snoRNA-TTS (ENSMUSG00000065274.1) 443 ENSMUSG00000065274.1 ENSMUSG00000065274 ENSMUST00000083340 Gm25125 snoRNA Interval_5465 chr1 89054496 89054707 + 0 NA Intergenic Intergenic 5627 ENSMUSG00000099544.1 ENSMUSG00000099544 ENSMUST00000190713 Gm18699 processed_pseudogene Interval_111262 chr4 16126089 16127118 + 0 NA intron (ENSMUSG00000041135.15, intron 10 of 11) protein_coding-intron (ENSMUSG00000041135.15, intron 9 of 10) 3072 ENSMUSG00000092795.2 ENSMUSG00000092795 ENSMUST00000175054 Gm22690 miRNA Interval_126777 chr5 92849288 92850083 + 0 NA intron (ENSMUSG00000029381.16, intron 1 of 9) protein_coding-intron (ENSMUSG00000029381.16, intron 1 of 9) -6786 ENSMUSG00000029381.16 ENSMUSG00000029381 ENSMUST00000172752 Shroom3 protein_coding Interval_51524 chr14 29739127 29739644 + 0 NA TTS (ENSMUSG00000114815.1) lincRNA-TTS (ENSMUSG00000114815.1) 1457 ENSMUSG00000114815.1 ENSMUSG00000114815 ENSMUST00000225158 Gm41118 lincRNA Interval_122069 chr5 15985994 15986220 + 0 NA intron (ENSMUSG00000040118.15, intron 1 of 37) protein_coding-intron (ENSMUSG00000040118.15, intron 1 of 38) 11732 ENSMUSG00000104886.1 ENSMUSG00000104886 ENSMUST00000198482 Gm43000 antisense Interval_135728 chr6 45323728 45323918 + 0 NA intron (ENSMUSG00000039419.17, intron 2 of 3) protein_coding-intron (ENSMUSG00000039419.17, intron 1 of 23) -2579 ENSMUSG00000107433.1 ENSMUSG00000107433 ENSMUST00000204871 Gm43882 TEC Interval_50038 chr13 119886454 119887833 + 0 NA Intergenic Intergenic 7642 ENSMUSG00000096284.2 ENSMUSG00000096284 ENSMUST00000178510 Tcstv1 protein_coding Interval_127500 chr5 104508000 104508913 + 0 NA exon (ENSMUSG00000097392.4, exon 1 of 2) protein_coding-exon (ENSMUSG00000097392.4, exon 1 of 2) 106 ENSMUSG00000097392.4 ENSMUSG00000097392 ENSMUST00000196593 Thoc2l protein_coding Interval_121234 chr4 154272591 154273647 + 0 NA intron (ENSMUSG00000057751.14, intron 4 of 4) protein_coding-intron (ENSMUSG00000057751.14, intron 36 of 36) 23823 ENSMUSG00000057751.14 ENSMUSG00000057751 ENSMUST00000142110 Megf6 protein_coding Interval_117887 chr4 126885536 126886837 + 0 NA intron (ENSMUSG00000042446.16, intron 17 of 23) protein_coding-intron (ENSMUSG00000042446.16, intron 23 of 29) -25074 ENSMUSG00000088984.1 ENSMUSG00000088984 ENSMUST00000158359 Gm25604 snoRNA Interval_5752 chr1 91458858 91459882 + 0 NA promoter-TSS (ENSMUSG00000055866.9) protein_coding-promoter-TSS (ENSMUSG00000055866.9) -9505 ENSMUSG00000055866.9 ENSMUSG00000055866 ENSMUST00000185298 Per2 protein_coding Interval_45359 chr13 54654305 54654590 + 0 NA intron (ENSMUSG00000025873.16, intron 5 of 5) protein_coding-intron (ENSMUSG00000025873.16, intron 8 of 10) 32646 ENSMUSG00000025873.16 ENSMUSG00000025873 ENSMUST00000141915 Faf2 protein_coding Interval_66355 chr16 33344777 33345189 + 0 NA Intergenic Intergenic 35692 ENSMUSG00000097318.2 ENSMUSG00000097318 ENSMUST00000180923 1700007L15Rik bidirectional_promoter_lncRNA Interval_31414 chr11 100551755 100552258 + 0 NA intron (ENSMUSG00000006784.14, intron 5 of 9) protein_coding-intron (ENSMUSG00000006784.14, intron 5 of 10) 6296 ENSMUSG00000006784.14 ENSMUSG00000006784 ENSMUST00000127389 Ttc25 protein_coding Interval_97841 chr2 144386241 144386499 + 0 NA intron (ENSMUSG00000027425.18, intron 4 of 10) protein_coding-intron (ENSMUSG00000027425.18, intron 4 of 10) 17374 ENSMUSG00000098387.2 ENSMUSG00000098387 ENSMUST00000183618 Pet117 protein_coding Interval_35413 chr12 21438241 21439363 + 0 NA Intergenic Intergenic 20923 ENSMUSG00000097055.2 ENSMUSG00000097055 ENSMUST00000227598 Gm4419 antisense Interval_164116 chr9 31619119 31619893 + 0 NA Intergenic Intergenic -24264 ENSMUSG00000111153.1 ENSMUSG00000111153 ENSMUST00000217424 Gm18820 processed_pseudogene Interval_78970 chr18 23410195 23410481 + 0 NA Intergenic Intergenic -86497 ENSMUSG00000024302.16 ENSMUSG00000024302 ENSMUST00000222726 Dtna protein_coding Interval_54139 chr14 65629608 65630748 + 0 NA intron (ENSMUSG00000061356.13, intron 12 of 18) protein_coding-intron (ENSMUSG00000061356.13, intron 12 of 18) 31632 ENSMUSG00000061356.13 ENSMUSG00000061356 ENSMUST00000079469 Nuggc protein_coding Interval_79287 chr18 30051381 30051577 + 0 NA Intergenic Intergenic -215770 ENSMUSG00000117465.1 ENSMUSG00000117465 ENSMUST00000234467 Gm49980 lincRNA Interval_39554 chr12 90476875 90477053 + 0 NA Intergenic Intergenic -14661 ENSMUSG00000113023.1 ENSMUSG00000113023 ENSMUST00000220911 Gm47686 processed_pseudogene Interval_72257 chr17 28839576 28840567 + 0 NA TTS (ENSMUSG00000063952.16) protein_coding-TTS (ENSMUSG00000063952.16) -17314 ENSMUSG00000117301.1 ENSMUSG00000117301 ENSMUST00000233498 Gm35883 antisense Interval_113405 chr4 54610063 54611144 + 0 NA Intergenic Intergenic 35677 ENSMUSG00000099421.1 ENSMUSG00000099421 ENSMUST00000190821 Gm29067 lincRNA Interval_126345 chr5 86841565 86841967 + 0 NA Intergenic Intergenic 21740 ENSMUSG00000105309.1 ENSMUSG00000105309 ENSMUST00000200382 Gm21461 unprocessed_pseudogene Interval_92986 chr2 69193406 69193946 + 0 NA TTS (ENSMUSG00000005233.16) protein_coding-TTS (ENSMUSG00000005233.16) 12514 ENSMUSG00000005233.16 ENSMUSG00000005233 ENSMUST00000150505 Spc25 protein_coding Interval_139397 chr6 99816939 99818043 + 0 NA Intergenic Intergenic 22823 ENSMUSG00000107713.1 ENSMUSG00000107713 ENSMUST00000205215 Gm6681 processed_pseudogene Interval_118733 chr4 133439574 133440862 + 0 NA Intergenic Intergenic 23912 ENSMUSG00000028854.9 ENSMUSG00000028854 ENSMUST00000141658 Slc9a1 protein_coding Interval_161240 chr8 119022062 119022934 + 0 NA intron (ENSMUSG00000031841.19, intron 6 of 7) protein_coding-intron (ENSMUSG00000031841.19, intron 6 of 13) -128967 ENSMUSG00000031841.19 ENSMUSG00000031841 ENSMUST00000151842 Cdh13 protein_coding Interval_119744 chr4 139629990 139630616 + 0 NA intron (ENSMUSG00000094439.1, intron 10 of 29) protein_coding-intron (ENSMUSG00000028737.15, intron 1 of 14) 7409 ENSMUSG00000028737.15 ENSMUSG00000028737 ENSMUST00000124987 Aldh4a1 protein_coding Interval_146 GL456389.1 10562 10785 + 0 NA NA NA NA NA Interval_2518 chr1 39915415 39916153 + 0 NA intron (ENSMUSG00000026074.15, intron 2 of 31) protein_coding-intron (ENSMUSG00000026074.15, intron 2 of 30) 14605 ENSMUSG00000026074.15 ENSMUSG00000026074 ENSMUST00000191657 Map4k4 protein_coding Interval_16603 chr10 64999577 64999963 + 0 NA intron (ENSMUSG00000060843.11, intron 17 of 17) protein_coding-intron (ENSMUSG00000060843.11, intron 16 of 16) 120597 ENSMUSG00000100528.1 ENSMUSG00000100528 ENSMUST00000187710 Gm28881 lincRNA Interval_35099 chr12 17306517 17307043 + 0 NA intron (ENSMUSG00000020566.19, intron 5 of 6) protein_coding-intron (ENSMUSG00000020566.19, intron 5 of 14) 17933 ENSMUSG00000020566.19 ENSMUSG00000020566 ENSMUST00000143131 Atp6v1c2 protein_coding Interval_47857 chr13 93882510 93883363 + 0 NA intron (ENSMUSG00000042082.7, intron 6 of 7) protein_coding-intron (ENSMUSG00000042082.7, intron 6 of 7) 40375 ENSMUSG00000093106.1 ENSMUSG00000093106 ENSMUST00000175365 Gm25534 miRNA Interval_32634 chr11 109316916 109317457 + 0 NA Intergenic Intergenic -29653 ENSMUSG00000099630.1 ENSMUSG00000099630 ENSMUST00000190043 1700096J18Rik lincRNA Interval_104742 chr3 69995252 69995588 + 0 NA Intergenic Intergenic -12193 ENSMUSG00000027788.6 ENSMUSG00000027788 ENSMUST00000053013 Otol1 protein_coding Interval_21287 chr10 127676756 127678192 + 0 NA promoter-TSS (ENSMUSG00000087163.1) antisense-promoter-TSS (ENSMUSG00000087163.1) -750 ENSMUSG00000087163.1 ENSMUSG00000087163 ENSMUST00000155550 Gm16230 antisense Interval_135081 chr6 35235977 35236973 + 0 NA intron (ENSMUSG00000038759.15, intron 9 of 9) protein_coding-intron (ENSMUSG00000038759.15, intron 34 of 42) -7120 ENSMUSG00000087808.1 ENSMUSG00000087808 ENSMUST00000157183 Gm23435 snRNA Interval_28824 chr11 78544605 78545268 + 0 NA intron (ENSMUSG00000037278.9, intron 1 of 2) protein_coding-intron (ENSMUSG00000037278.9, intron 1 of 2) 5841 ENSMUSG00000037278.9 ENSMUSG00000037278 ENSMUST00000103242 Tmem97 protein_coding Interval_171611 chr9 119531642 119531902 + 0 NA intron (ENSMUSG00000032511.17, intron 12 of 27) protein_coding-intron (ENSMUSG00000032511.17, intron 11 of 26) 31731 ENSMUSG00000032511.17 ENSMUSG00000032511 ENSMUST00000138934 Scn5a protein_coding Interval_88157 chr19 60029263 60029590 + 0 NA Intergenic Intergenic -50006 ENSMUSG00000118291.1 ENSMUSG00000118291 ENSMUST00000237917 Csf1r-ps processed_pseudogene Interval_139406 chr6 99893918 99894620 + 0 NA promoter-TSS (ENSMUSG00000087946.1) misc_RNA-promoter-TSS (ENSMUSG00000087946.1) -722 ENSMUSG00000087946.1 ENSMUSG00000087946 ENSMUST00000157321 Gm24248 misc_RNA Interval_104344 chr3 63834757 63835319 + 0 NA intron (ENSMUSG00000036834.16, intron 2 of 22) protein_coding-intron (ENSMUSG00000036834.16, intron 1 of 21) -8078 ENSMUSG00000085290.1 ENSMUSG00000085290 ENSMUST00000152628 Gm16129 processed_pseudogene Interval_38508 chr12 79732645 79732927 + 0 NA intron (ENSMUSG00000059060.15, intron 8 of 10) protein_coding-intron (ENSMUSG00000059060.15, intron 8 of 10) 192708 ENSMUSG00000112765.1 ENSMUSG00000112765 ENSMUST00000219857 9430078K24Rik lincRNA Interval_163044 chr9 14770605 14771316 + 0 NA promoter-TSS (ENSMUSG00000031927.9) protein_coding-promoter-TSS (ENSMUSG00000031927.9) -9301 ENSMUSG00000031927.9 ENSMUSG00000031927 ENSMUST00000060330 1700012B09Rik protein_coding Interval_98719 chr2 154485911 154486560 + 0 NA intron (ENSMUSG00000038533.15, intron 1 of 2) protein_coding-intron (ENSMUSG00000038533.15, intron 1 of 10) 49393 ENSMUSG00000038533.15 ENSMUSG00000038533 ENSMUST00000139506 Cbfa2t2 protein_coding Interval_115969 chr4 106663811 106665575 + 0 NA intron (ENSMUSG00000025413.13, intron 1 of 1) protein_coding-intron (ENSMUSG00000025413.13, intron 9 of 9) 13590 ENSMUSG00000043572.7 ENSMUSG00000043572 ENSMUST00000058905 Pars2 protein_coding Interval_62904 chr15 97809342 97810071 + 0 NA intron (ENSMUSG00000022475.19, intron 5 of 22) protein_coding-intron (ENSMUSG00000022475.19, intron 5 of 24) 21788 ENSMUSG00000022475.19 ENSMUSG00000022475 ENSMUST00000134258 Hdac7 protein_coding Interval_28621 chr11 77250984 77251328 + 0 NA intron (ENSMUSG00000037926.15, intron 1 of 14) protein_coding-intron (ENSMUSG00000037926.15, intron 1 of 14) -6141 ENSMUSG00000077649.1 ENSMUSG00000077649 ENSMUST00000104461 Gm24989 snoRNA Interval_171641 chr9 119827851 119829142 + 0 NA Intergenic Intergenic -4636 ENSMUSG00000034115.10 ENSMUSG00000034115 ENSMUST00000070617 Scn11a protein_coding Interval_170674 chr9 110020588 110021518 + 0 NA intron (ENSMUSG00000032479.15, intron 3 of 18) protein_coding-intron (ENSMUSG00000032479.15, intron 3 of 18) 15079 ENSMUSG00000105230.1 ENSMUSG00000105230 ENSMUST00000196806 Gm42433 TEC Interval_12198 chr1 190791617 190793334 + 0 NA intron (ENSMUSG00000089872.10, intron 3 of 5) protein_coding-intron (ENSMUSG00000089872.10, intron 12 of 14) 107242 ENSMUSG00000089872.10 ENSMUSG00000089872 ENSMUST00000159066 Rps6kc1 protein_coding Interval_170892 chr9 111647970 111648225 + 0 NA intron (ENSMUSG00000032502.8, intron 1 of 10) protein_coding-intron (ENSMUSG00000032502.8, intron 1 of 10) -34082 ENSMUSG00000077156.1 ENSMUSG00000077156 ENSMUST00000103968 n-R5s90 rRNA Interval_48115 chr13 96344773 96345850 + 0 NA Intergenic Intergenic -11800 ENSMUSG00000076343.1 ENSMUSG00000076343 ENSMUST00000102388 Gm25213 miRNA Interval_95487 chr2 110085920 110086199 + 0 NA intron (ENSMUSG00000027160.16, intron 2 of 2) protein_coding-intron (ENSMUSG00000027160.16, intron 2 of 2) -35583 ENSMUSG00000086186.1 ENSMUSG00000086186 ENSMUST00000123633 Ccdc34os antisense Interval_88948 chr2 13372019 13372728 + 0 NA intron (ENSMUSG00000026726.10, intron 31 of 66) protein_coding-intron (ENSMUSG00000026726.10, intron 31 of 66) 83254 ENSMUSG00000026726.10 ENSMUSG00000026726 ENSMUST00000148506 Cubn protein_coding Interval_19836 chr10 110067272 110067757 + 0 NA intron (ENSMUSG00000020181.18, intron 3 of 40) protein_coding-intron (ENSMUSG00000020181.18, intron 3 of 4) -11177 ENSMUSG00000112197.1 ENSMUSG00000112197 ENSMUST00000220224 Gm47337 TEC Interval_148323 chr7 80512390 80512595 + 0 NA intron (ENSMUSG00000030528.12, intron 2 of 14) protein_coding-intron (ENSMUSG00000030528.12, intron 3 of 21) 4705 ENSMUSG00000091989.1 ENSMUSG00000091989 ENSMUST00000166096 Ndufab1-ps processed_pseudogene Interval_62794 chr15 97037329 97038393 + 0 NA intron (ENSMUSG00000022464.14, intron 1 of 15) protein_coding-intron (ENSMUSG00000022464.14, intron 1 of 15) -17910 ENSMUSG00000022464.14 ENSMUSG00000022464 ENSMUST00000230907 Slc38a4 protein_coding Interval_13386 chr10 17645368 17645889 + 0 NA intron (ENSMUSG00000112629.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000112629.1, intron 1 of 2) 12885 ENSMUSG00000112629.1 ENSMUSG00000112629 ENSMUST00000219966 Gm47771 lincRNA Interval_47917 chr13 94364408 94365866 + 0 NA intron (ENSMUSG00000021686.6, intron 1 of 26) protein_coding-intron (ENSMUSG00000021686.6, intron 1 of 26) -6214 ENSMUSG00000042857.3 ENSMUSG00000042857 ENSMUST00000221110 Gm9776 bidirectional_promoter_lncRNA Interval_92311 chr2 58596863 58597501 + 0 NA intron (ENSMUSG00000026839.17, intron 1 of 3) protein_coding-intron (ENSMUSG00000026839.17, intron 1 of 7) -35899 ENSMUSG00000026839.17 ENSMUSG00000026839 ENSMUST00000128864 Upp2 protein_coding Interval_10317 chr1 168714792 168714966 + 0 NA Intergenic Intergenic -38997 ENSMUSG00000103463.1 ENSMUSG00000103463 ENSMUST00000194611 1700063I16Rik TEC Interval_142255 chr6 140081356 140082232 + 0 NA Intergenic Intergenic -11296 ENSMUSG00000108047.1 ENSMUSG00000108047 ENSMUST00000203881 Gm44158 processed_pseudogene Interval_113705 chr4 57765872 57766367 + 0 NA intron (ENSMUSG00000038729.24, intron 2 of 2) protein_coding-intron (ENSMUSG00000038729.24, intron 2 of 2) -2218 ENSMUSG00000073846.4 ENSMUSG00000073846 ENSMUST00000154462 Gm12526 processed_transcript Interval_45585 chr13 56074678 56075922 + 0 NA intron (ENSMUSG00000015937.15, intron 3 of 3) protein_coding-intron (ENSMUSG00000015937.15, intron 8 of 8) -45066 ENSMUSG00000114229.1 ENSMUSG00000114229 ENSMUST00000225745 Gm47072 processed_pseudogene Interval_84902 chr19 18689236 18689623 + 0 NA intron (ENSMUSG00000024726.10, intron 3 of 7) protein_coding-intron (ENSMUSG00000024726.10, intron 3 of 7) 18100 ENSMUSG00000024726.10 ENSMUSG00000024726 ENSMUST00000236401 Carnmt1 protein_coding Interval_61687 chr15 83405656 83406448 + 0 NA promoter-TSS (ENSMUSG00000049414.7) processed_pseudogene-promoter-TSS (ENSMUSG00000049414.7) 11 ENSMUSG00000049414.7 ENSMUSG00000049414 ENSMUST00000079706 Gm5417 processed_pseudogene Interval_33089 chr11 114325053 114325363 + 0 NA Intergenic Intergenic -31921 ENSMUSG00000081548.1 ENSMUSG00000081548 ENSMUST00000122121 Gm11692 processed_pseudogene Interval_74231 chr17 47598129 47598813 + 0 NA TTS (ENSMUSG00000023988.8) protein_coding-TTS (ENSMUSG00000023988.8) 2147 ENSMUSG00000034165.16 ENSMUSG00000034165 ENSMUST00000183206 Ccnd3 protein_coding Interval_14406 chr10 33036367 33036865 + 0 NA Intergenic Intergenic -43938 ENSMUSG00000019787.9 ENSMUSG00000019787 ENSMUST00000219000 Trdn protein_coding Interval_148402 chr7 81038404 81038608 + 0 NA TTS (ENSMUSG00000005621.11) protein_coding-TTS (ENSMUSG00000005621.11) 15086 ENSMUSG00000005621.11 ENSMUSG00000005621 ENSMUST00000125137 Zfp592 protein_coding Interval_123100 chr5 29710705 29711074 + 0 NA TTS (ENSMUSG00000088150.1) misc_RNA-TTS (ENSMUSG00000088150.1) 1255 ENSMUSG00000088150.1 ENSMUSG00000088150 ENSMUST00000157525 Gm26346 misc_RNA Interval_56437 chr14 118749740 118751848 + 0 NA Intergenic Intergenic -15649 ENSMUSG00000098630.1 ENSMUSG00000098630 ENSMUST00000184172 Gm27198 lincRNA Interval_141753 chr6 134236575 134236934 + 0 NA intron (ENSMUSG00000092134.1, intron 3 of 3) protein_coding-intron (ENSMUSG00000030199.16, intron 4 of 7) 3154 ENSMUSG00000030199.16 ENSMUSG00000030199 ENSMUST00000145869 Etv6 protein_coding Interval_158131 chr8 79059830 79061574 + 0 NA exon (ENSMUSG00000071064.15, exon 2 of 3) protein_coding-exon (ENSMUSG00000071064.15, exon 2 of 3) 32115 ENSMUSG00000071064.15 ENSMUSG00000071064 ENSMUST00000129613 Zfp827 protein_coding Interval_100757 chr2 172383917 172384355 + 0 NA Intergenic Intergenic -9765 ENSMUSG00000074570.14 ENSMUSG00000074570 ENSMUST00000228775 Cass4 protein_coding Interval_143519 chr7 11594716 11596580 + 0 NA Intergenic Intergenic -1454 ENSMUSG00000110024.1 ENSMUSG00000110024 ENSMUST00000209309 Gm7210 unprocessed_pseudogene Interval_106261 chr3 94980770 94981935 + 0 NA intron (ENSMUSG00000038861.14, intron 1 of 3) protein_coding-intron (ENSMUSG00000038861.14, intron 1 of 10) 6521 ENSMUSG00000038861.14 ENSMUSG00000038861 ENSMUST00000133166 Pi4kb protein_coding Interval_123525 chr5 33214425 33216394 + 0 NA intron (ENSMUSG00000037379.7, intron 4 of 4) protein_coding-intron (ENSMUSG00000037379.7, intron 5 of 5) 2786 ENSMUSG00000037379.7 ENSMUSG00000037379 ENSMUST00000201475 Spon2 protein_coding Interval_96426 chr2 122396034 122396517 + 0 NA Intergenic Intergenic -10635 ENSMUSG00000088506.1 ENSMUSG00000088506 ENSMUST00000157881 Gm24409 snRNA Interval_84745 chr19 16168128 16169102 + 0 NA intron (ENSMUSG00000024639.5, intron 1 of 2) protein_coding-intron (ENSMUSG00000024639.5, intron 1 of 6) -3810 ENSMUSG00000057990.4 ENSMUSG00000057990 ENSMUST00000075293 E030024N20Rik processed_pseudogene Interval_1255 chr1 18322780 18323675 + 0 NA Intergenic Intergenic -58147 ENSMUSG00000067773.6 ENSMUSG00000067773 ENSMUST00000097817 Defb41 protein_coding Interval_101567 chr3 6461805 6462226 + 0 NA Intergenic Intergenic -10427 ENSMUSG00000098226.1 ENSMUSG00000098226 ENSMUST00000182730 Gm5272 processed_pseudogene Interval_65569 chr16 23410550 23410809 + 0 NA Intergenic Intergenic 13056 ENSMUSG00000084439.1 ENSMUSG00000084439 ENSMUST00000122490 Gm23430 misc_RNA Interval_70988 chr17 17019774 17020050 + 0 NA Intergenic Intergenic -44201 ENSMUSG00000096696.1 ENSMUSG00000096696 ENSMUST00000127027 Zfp960 protein_coding Interval_132382 chr5 144616578 144617312 + 0 NA Intergenic Intergenic 71043 ENSMUSG00000059991.7 ENSMUSG00000059991 ENSMUST00000071782 Nptx2 protein_coding Interval_241 KZ289068.1 275260 276581 + 0 NA NA NA NA NA Interval_93052 chr2 69837224 69838886 + 0 NA Intergenic Intergenic 13701 ENSMUSG00000042155.3 ENSMUSG00000042155 ENSMUST00000152898 Klhl23 protein_coding Interval_120540 chr4 149223489 149223753 + 0 NA promoter-TSS (ENSMUSG00000063077.15) protein_coding-promoter-TSS (ENSMUSG00000063077.15) -56850 ENSMUSG00000028961.15 ENSMUSG00000028961 ENSMUST00000143944 Pgd protein_coding Interval_174210 chrX 139774234 139775007 + 0 NA Intergenic Intergenic 7733 ENSMUSG00000072945.3 ENSMUSG00000072945 ENSMUST00000101217 Ripply1 protein_coding Interval_43044 chr13 23459172 23459719 + 0 NA intron (ENSMUSG00000000706.16, intron 7 of 7) protein_coding-intron (ENSMUSG00000000706.16, intron 7 of 7) 5964 ENSMUSG00000000706.16 ENSMUSG00000000706 ENSMUST00000225831 Btn1a1 protein_coding Interval_8696 chr1 148723304 148723620 + 0 NA Intergenic Intergenic -72328 ENSMUSG00000101735.1 ENSMUSG00000101735 ENSMUST00000187360 Gm18505 processed_pseudogene Interval_81465 chr18 60929637 60930514 + 0 NA intron (ENSMUSG00000024617.16, intron 1 of 6) protein_coding-intron (ENSMUSG00000024617.16, intron 1 of 18) 3126 ENSMUSG00000024617.16 ENSMUSG00000024617 ENSMUST00000039904 Camk2a protein_coding Interval_18381 chr10 85445487 85445775 + 0 NA intron (ENSMUSG00000020042.15, intron 1 of 16) protein_coding-intron (ENSMUSG00000020042.15, intron 1 of 9) 111730 ENSMUSG00000087895.1 ENSMUSG00000087895 ENSMUST00000157270 Gm25281 miRNA Interval_103382 chr3 41063663 41064595 + 0 NA Intergenic Intergenic 6541 ENSMUSG00000049940.7 ENSMUSG00000049940 ENSMUST00000124636 Pgrmc2 protein_coding Interval_151204 chr7 119594967 119595893 + 0 NA intron (ENSMUSG00000030945.17, intron 4 of 4) protein_coding-intron (ENSMUSG00000030945.17, intron 13 of 13) 9350 ENSMUSG00000109478.1 ENSMUSG00000109478 ENSMUST00000207973 Gm39078 lincRNA Interval_163254 chr9 20060954 20061223 + 0 NA Intergenic Intergenic -3526 ENSMUSG00000044454.5 ENSMUSG00000044454 ENSMUST00000060780 Olfr867 protein_coding Interval_25020 chr11 43213254 43214153 + 0 NA intron (ENSMUSG00000055415.8, intron 9 of 20) protein_coding-intron (ENSMUSG00000055415.8, intron 10 of 21) 18561 ENSMUSG00000086170.1 ENSMUSG00000086170 ENSMUST00000136288 Gm12144 antisense Interval_33726 chr11 118133276 118134109 + 0 NA intron (ENSMUSG00000017132.17, intron 12 of 13) protein_coding-intron (ENSMUSG00000017132.17, intron 12 of 13) 18837 ENSMUSG00000085511.1 ENSMUSG00000085511 ENSMUST00000134069 Gm11738 antisense Interval_50155 chr14 8329101 8329750 + 0 NA Intergenic Intergenic -19630 ENSMUSG00000021750.16 ENSMUSG00000021750 ENSMUST00000137133 Fam107a protein_coding Interval_102234 chr3 19768550 19768859 + 0 NA promoter-TSS (ENSMUSG00000106182.1) processed_pseudogene-promoter-TSS (ENSMUSG00000106182.1) -169 ENSMUSG00000106182.1 ENSMUSG00000106182 ENSMUST00000197778 Gm7442 processed_pseudogene Interval_157236 chr8 68295170 68295680 + 0 NA intron (ENSMUSG00000053886.4, intron 2 of 7) protein_coding-intron (ENSMUSG00000053886.4, intron 3 of 8) -3644 ENSMUSG00000110472.1 ENSMUSG00000110472 ENSMUST00000213094 Gm45739 processed_pseudogene Interval_113704 chr4 57757016 57758234 + 0 NA TTS (ENSMUSG00000073846.4) processed_transcript-TTS (ENSMUSG00000073846.4) -4982 ENSMUSG00000089286.1 ENSMUSG00000089286 ENSMUST00000158661 Gm24277 snRNA Interval_28760 chr11 78151149 78151781 + 0 NA intron (ENSMUSG00000037750.16, intron 2 of 2) protein_coding-intron (ENSMUSG00000037750.16, intron 2 of 2) -2027 ENSMUSG00000060727.4 ENSMUSG00000060727 ENSMUST00000118132 Gm12571 processed_pseudogene Interval_158925 chr8 87997566 87998248 + 0 NA Intergenic Intergenic -44045 ENSMUSG00000045333.15 ENSMUSG00000045333 ENSMUST00000173092 Zfp423 protein_coding Interval_129201 chr5 118154535 118155739 + 0 NA exon (ENSMUSG00000032867.8, exon 1 of 11) protein_coding-exon (ENSMUSG00000032867.8, exon 1 of 11) 289 ENSMUSG00000032867.8 ENSMUSG00000032867 ENSMUST00000201545 Fbxw8 protein_coding Interval_48565 chr13 100331131 100331965 + 0 NA Intergenic Intergenic -13874 ENSMUSG00000078942.10 ENSMUSG00000078942 ENSMUST00000118574 Naip6 protein_coding Interval_128640 chr5 114454819 114456358 + 0 NA TTS (ENSMUSG00000041939.14) protein_coding-TTS (ENSMUSG00000041939.14) 3168 ENSMUSG00000041939.14 ENSMUSG00000041939 ENSMUST00000139420 Mvk protein_coding Interval_99771 chr2 164804611 164805704 + 0 NA promoter-TSS (ENSMUSG00000017307.16) protein_coding-promoter-TSS (ENSMUSG00000017307.16) 59 ENSMUSG00000045822.4 ENSMUSG00000045822 ENSMUST00000052107 Zswim3 protein_coding Interval_169995 chr9 103485396 103485646 + 0 NA intron (ENSMUSG00000042757.16, intron 1 of 1) protein_coding-intron (ENSMUSG00000042757.16, intron 4 of 4) -3805 ENSMUSG00000085168.2 ENSMUSG00000085168 ENSMUST00000215604 Gm16252 antisense Interval_119235 chr4 136363007 136363703 + 0 NA Intergenic Intergenic -13914 ENSMUSG00000098155.1 ENSMUSG00000098155 ENSMUST00000183225 Gm27022 lincRNA Interval_84983 chr19 20953998 20954271 + 0 NA promoter-TSS (ENSMUSG00000024749.9) protein_coding-promoter-TSS (ENSMUSG00000024749.9) 31742 ENSMUSG00000118293.1 ENSMUSG00000118293 ENSMUST00000238088 Gm32750 antisense Interval_80402 chr18 41874223 41875754 + 0 NA promoter-TSS (ENSMUSG00000117745.1) lincRNA-promoter-TSS (ENSMUSG00000117745.1) -154 ENSMUSG00000117745.1 ENSMUSG00000117745 ENSMUST00000235677 Gm50410 lincRNA Interval_59896 chr15 61157464 61158540 + 0 NA intron (ENSMUSG00000116498.1, intron 1 of 4) lincRNA-intron (ENSMUSG00000116498.1, intron 1 of 4) 133 ENSMUSG00000116498.1 ENSMUSG00000116498 ENSMUST00000229334 Gm38563 lincRNA Interval_68096 chr16 65030754 65031031 + 0 NA intron (ENSMUSG00000050783.5, intron 2 of 2) protein_coding-intron (ENSMUSG00000050783.5, intron 2 of 2) 74962 ENSMUSG00000050783.5 ENSMUSG00000050783 ENSMUST00000063076 Htr1f protein_coding Interval_153635 chr8 4147020 4147871 + 0 NA Intergenic Intergenic 13347 ENSMUSG00000079168.4 ENSMUSG00000079168 ENSMUST00000130372 Cd209g protein_coding Interval_66168 chr16 32091197 32092142 + 0 NA TTS (ENSMUSG00000023791.17) protein_coding-TTS (ENSMUSG00000023791.17) 8071 ENSMUSG00000023791.17 ENSMUSG00000023791 ENSMUST00000144216 Pigx protein_coding Interval_114871 chr4 86596330 86596684 + 0 NA intron (ENSMUSG00000038047.18, intron 8 of 14) protein_coding-intron (ENSMUSG00000038047.18, intron 8 of 16) -9924 ENSMUSG00000088958.1 ENSMUSG00000088958 ENSMUST00000158333 Scarna8 scaRNA Interval_124235 chr5 41819314 41820303 + 0 NA exon (ENSMUSG00000061755.10, exon 10 of 27) protein_coding-exon (ENSMUSG00000061755.10, exon 10 of 27) 24507 ENSMUSG00000061755.10 ENSMUSG00000061755 ENSMUST00000202200 Bod1l protein_coding Interval_76572 chr17 81334777 81335035 + 0 NA Intergenic Intergenic -35927 ENSMUSG00000117413.1 ENSMUSG00000117413 ENSMUST00000234591 Gm50044 antisense Interval_35498 chr12 23105513 23105780 + 0 NA Intergenic Intergenic 9938 ENSMUSG00000113174.1 ENSMUSG00000113174 ENSMUST00000222008 Gm9292 unprocessed_pseudogene Interval_158261 chr8 80686033 80686683 + 0 NA intron (ENSMUSG00000042353.9, intron 5 of 7) protein_coding-intron (ENSMUSG00000042353.9, intron 5 of 7) 24503 ENSMUSG00000031715.14 ENSMUSG00000031715 ENSMUST00000148455 Smarca5 protein_coding Interval_96792 chr2 128282183 128282382 + 0 NA intron (ENSMUSG00000074813.14, intron 2 of 3) lincRNA-intron (ENSMUSG00000074813.14, intron 2 of 4) 92295 ENSMUSG00000085750.1 ENSMUSG00000085750 ENSMUST00000152439 Gm14009 lincRNA Interval_92103 chr2 53208768 53208966 + 0 NA intron (ENSMUSG00000026960.6, intron 3 of 3) protein_coding-intron (ENSMUSG00000026960.6, intron 3 of 3) 17141 ENSMUSG00000026960.6 ENSMUSG00000026960 ENSMUST00000028336 Arl6ip6 protein_coding Interval_7188 chr1 127619357 127619582 + 0 NA intron (ENSMUSG00000026347.13, intron 2 of 7) protein_coding-intron (ENSMUSG00000026347.13, intron 2 of 8) 60079 ENSMUSG00000026347.13 ENSMUSG00000026347 ENSMUST00000162406 Tmem163 protein_coding Interval_81669 chr18 63022279 63023000 + 0 NA intron (ENSMUSG00000041482.17, intron 44 of 50) protein_coding-intron (ENSMUSG00000041482.17, intron 46 of 53) 44792 ENSMUSG00000024581.13 ENSMUSG00000024581 ENSMUST00000236914 Napg protein_coding Interval_85147 chr19 23168434 23171136 + 0 NA Intergenic Intergenic 20354 ENSMUSG00000080626.1 ENSMUSG00000080626 ENSMUST00000116976 Mir1192 miRNA Interval_62778 chr15 96832510 96833074 + 0 NA Intergenic Intergenic -65714 ENSMUSG00000095638.2 ENSMUSG00000095638 ENSMUST00000177677 Gm8888 processed_pseudogene Interval_26430 chr11 57813454 57814295 + 0 NA Intergenic Intergenic 12237 ENSMUSG00000020519.5 ENSMUSG00000020519 ENSMUST00000020826 Sap30l protein_coding Interval_44589 chr13 46539440 46539689 + 0 NA intron (ENSMUSG00000021373.16, intron 2 of 11) protein_coding-intron (ENSMUSG00000021373.16, intron 3 of 12) 20880 ENSMUSG00000087913.1 ENSMUSG00000087913 ENSMUST00000157288 Gm24915 rRNA Interval_85780 chr19 31064677 31065357 + 0 NA intron (ENSMUSG00000052920.16, intron 3 of 17) protein_coding-intron (ENSMUSG00000052920.16, intron 3 of 17) -17820 ENSMUSG00000053536.7 ENSMUSG00000053536 ENSMUST00000066039 Cstf2t protein_coding Interval_144133 chr7 19577144 19577595 + 0 NA promoter-TSS (ENSMUSG00000011267.8) protein_coding-promoter-TSS (ENSMUSG00000011267.8) 226 ENSMUSG00000044709.6 ENSMUSG00000044709 ENSMUST00000151646 Gemin7 protein_coding Interval_63064 chr15 98904471 98905222 + 0 NA intron (ENSMUSG00000022999.15, intron 2 of 3) protein_coding-intron (ENSMUSG00000022999.15, intron 15 of 16) 1658 ENSMUSG00000022999.15 ENSMUSG00000022999 ENSMUST00000126159 Lmbr1l protein_coding Interval_109410 chr3 141981479 141982342 + 0 NA intron (ENSMUSG00000052430.15, intron 2 of 11) protein_coding-intron (ENSMUSG00000052430.15, intron 1 of 10) -50402 ENSMUSG00000052430.15 ENSMUSG00000052430 ENSMUST00000106230 Bmpr1b protein_coding Interval_36946 chr12 55517733 55518577 + 0 NA Intergenic Intergenic 20434 ENSMUSG00000112348.1 ENSMUSG00000112348 ENSMUST00000218356 Gm36634 processed_transcript Interval_87740 chr19 55548619 55548845 + 0 NA intron (ENSMUSG00000024983.10, intron 8 of 8) protein_coding-intron (ENSMUSG00000024983.10, intron 7 of 7) -193532 ENSMUSG00000024985.20 ENSMUSG00000024985 ENSMUST00000148666 Tcf7l2 protein_coding Interval_58604 chr15 36503339 36503772 + 0 NA promoter-TSS (ENSMUSG00000115084.1) TEC-promoter-TSS (ENSMUSG00000115084.1) -124 ENSMUSG00000115084.1 ENSMUSG00000115084 ENSMUST00000228391 Gm49246 TEC Interval_95884 chr2 117962692 117962887 + 0 NA intron (ENSMUSG00000087203.7, intron 8 of 9) processed_transcript-intron (ENSMUSG00000087203.7, intron 8 of 9) -77054 ENSMUSG00000103266.1 ENSMUSG00000103266 ENSMUST00000193616 Gm36979 TEC Interval_98481 chr2 152705987 152708288 + 0 NA exon (ENSMUSG00000019188.16, exon 12 of 12) protein_coding-exon (ENSMUSG00000019188.16, exon 12 of 12) 20102 ENSMUSG00000042814.8 ENSMUSG00000042814 ENSMUST00000062148 Mcts2 protein_coding Interval_14414 chr10 33339888 33340491 + 0 NA intron (ENSMUSG00000019787.9, intron 19 of 37) protein_coding-intron (ENSMUSG00000019787.9, intron 19 of 37) -12414 ENSMUSG00000112855.1 ENSMUSG00000112855 ENSMUST00000220106 Gm47842 processed_pseudogene Interval_12463 chr1 193677377 193677850 + 0 NA Intergenic Intergenic -167439 ENSMUSG00000097850.2 ENSMUSG00000097850 ENSMUST00000180420 Mir205hg lincRNA Interval_32835 chr11 111462385 111462592 + 0 NA Intergenic Intergenic 150818 ENSMUSG00000082448.1 ENSMUSG00000082448 ENSMUST00000120443 Gm11676 processed_pseudogene Interval_57003 chr15 3978951 3980076 + 0 NA promoter-TSS (ENSMUSG00000022184.8) protein_coding-promoter-TSS (ENSMUSG00000022184.8) -6653 ENSMUSG00000022184.8 ENSMUSG00000022184 ENSMUST00000148169 Fbxo4 protein_coding Interval_10289 chr1 168101633 168102005 + 0 NA intron (ENSMUSG00000093538.2, intron 1 of 2) antisense-intron (ENSMUSG00000093538.2, intron 1 of 2) 97680 ENSMUSG00000093538.2 ENSMUSG00000093538 ENSMUST00000177351 Gm20711 antisense Interval_166466 chr9 59728961 59729380 + 0 NA Intergenic Intergenic 15054 ENSMUSG00000074259.10 ENSMUSG00000074259 ENSMUST00000143224 Gramd2 protein_coding Interval_66769 chr16 37476656 37477299 + 0 NA Intergenic Intergenic 62799 ENSMUSG00000022828.10 ENSMUSG00000022828 ENSMUST00000130350 Gtf2e1 protein_coding Interval_165355 chr9 46557770 46558310 + 0 NA Intergenic Intergenic -4934 ENSMUSG00000077383.1 ENSMUSG00000077383 ENSMUST00000104195 Gm22659 snoRNA Interval_79228 chr18 26157087 26157587 + 0 NA intron (ENSMUSG00000117604.1, intron 7 of 13) processed_transcript-intron (ENSMUSG00000117604.1, intron 7 of 13) 149780 ENSMUSG00000117604.1 ENSMUSG00000117604 ENSMUST00000234272 Gm33228 processed_transcript Interval_102129 chr3 18256349 18257053 + 0 NA Intergenic Intergenic -13363 ENSMUSG00000039519.6 ENSMUSG00000039519 ENSMUST00000035625 Cyp7b1 protein_coding Interval_164201 chr9 32444631 32446047 + 0 NA intron (ENSMUSG00000016087.13, intron 5 of 6) protein_coding-intron (ENSMUSG00000016087.13, intron 5 of 8) 1589 ENSMUSG00000064492.1 ENSMUSG00000064492 ENSMUST00000082558 Gm22060 snRNA Interval_118140 chr4 129188761 129190353 + 0 NA promoter-TSS (ENSMUSG00000040928.15) protein_coding-promoter-TSS (ENSMUSG00000040928.15) 20 ENSMUSG00000040928.15 ENSMUSG00000040928 ENSMUST00000142490 S100pbp protein_coding Interval_146556 chr7 46814838 46815401 + 0 NA intron (ENSMUSG00000006599.13, intron 5 of 5) protein_coding-intron (ENSMUSG00000006599.13, intron 10 of 14) 6298 ENSMUSG00000087298.3 ENSMUSG00000087298 ENSMUST00000119337 Gm9392 processed_pseudogene Interval_47958 chr13 94639634 94640841 + 0 NA Intergenic Intergenic 7107 ENSMUSG00000113598.1 ENSMUSG00000113598 ENSMUST00000221068 Gm48287 lincRNA Interval_11770 chr1 185315058 185315696 + 0 NA intron (ENSMUSG00000026618.11, intron 12 of 12) protein_coding-intron (ENSMUSG00000026618.11, intron 12 of 22) 1796 ENSMUSG00000065562.1 ENSMUSG00000065562 ENSMUST00000083628 Mir215 miRNA Interval_122479 chr5 23359176 23359434 + 0 NA Intergenic Intergenic -12031 ENSMUSG00000105254.1 ENSMUSG00000105254 ENSMUST00000199688 Gm42951 lincRNA Interval_136096 chr6 50882114 50882611 + 0 NA Intergenic Intergenic -4285 ENSMUSG00000107993.3 ENSMUSG00000107993 ENSMUST00000161723 G930045G22Rik lincRNA Interval_105468 chr3 86830905 86833519 + 0 NA intron (ENSMUSG00000028078.14, intron 3 of 15) protein_coding-intron (ENSMUSG00000028078.14, intron 3 of 15) -32280 ENSMUSG00000104074.1 ENSMUSG00000104074 ENSMUST00000195159 Gm37025 processed_pseudogene Interval_87758 chr19 55685213 55685385 + 0 NA Intergenic Intergenic -56965 ENSMUSG00000024985.20 ENSMUSG00000024985 ENSMUST00000148666 Tcf7l2 protein_coding Interval_37709 chr12 71296156 71297419 + 0 NA Intergenic Intergenic -13197 ENSMUSG00000044548.11 ENSMUSG00000044548 ENSMUST00000150639 Dact1 protein_coding Interval_27737 chr11 69733904 69734362 + 0 NA TTS (ENSMUSG00000005198.15) protein_coding-TTS (ENSMUSG00000005198.15) 3215 ENSMUSG00000005198.15 ENSMUSG00000005198 ENSMUST00000151586 Polr2a protein_coding Interval_56508 chr14 119513167 119513925 + 0 NA intron (ENSMUSG00000053465.6, intron 1 of 1) protein_coding-intron (ENSMUSG00000053465.6, intron 1 of 1) -130466 ENSMUSG00000115196.1 ENSMUSG00000115196 ENSMUST00000226465 Gm6212 processed_pseudogene Interval_74048 chr17 46259771 46261001 + 0 NA TTS (ENSMUSG00000012296.16) protein_coding-TTS (ENSMUSG00000012296.16) 6855 ENSMUSG00000071073.5 ENSMUSG00000071073 ENSMUST00000095262 Lrrc73 protein_coding Interval_72947 chr17 33718164 33719151 + 0 NA promoter-TSS (ENSMUSG00000079557.11) protein_coding-promoter-TSS (ENSMUSG00000079557.11) -12 ENSMUSG00000079557.11 ENSMUSG00000079557 ENSMUST00000173392 Marchf2 protein_coding Interval_52381 chr14 45493822 45494257 + 0 NA intron (ENSMUSG00000037712.16, intron 2 of 2) protein_coding-intron (ENSMUSG00000037712.16, intron 3 of 14) -1954 ENSMUSG00000115275.1 ENSMUSG00000115275 ENSMUST00000228572 9630050E16Rik TEC Interval_145882 chr7 41352523 41352980 + 0 NA Intergenic Intergenic 17367 ENSMUSG00000082080.3 ENSMUSG00000082080 ENSMUST00000117587 Gm9246 processed_pseudogene Interval_106933 chr3 102027801 102028129 + 0 NA Intergenic Intergenic 17810 ENSMUSG00000048540.8 ENSMUSG00000048540 ENSMUST00000198675 Nhlh2 protein_coding Interval_86196 chr19 37703508 37704583 + 0 NA Intergenic Intergenic 5960 ENSMUSG00000024987.6 ENSMUSG00000024987 ENSMUST00000236500 Cyp26a1 protein_coding Interval_157070 chr8 64951464 64952914 + 0 NA intron (ENSMUSG00000025521.15, intron 1 of 5) protein_coding-intron (ENSMUSG00000025521.15, intron 1 of 5) -4471 ENSMUSG00000110378.1 ENSMUSG00000110378 ENSMUST00000210666 Gm45242 TEC Interval_117663 chr4 125429066 125429743 + 0 NA Intergenic Intergenic -61296 ENSMUSG00000001985.9 ENSMUSG00000001985 ENSMUST00000030676 Grik3 protein_coding Interval_117166 chr4 120184581 120185041 + 0 NA Intergenic Intergenic 23605 ENSMUSG00000028635.7 ENSMUSG00000028635 ENSMUST00000030384 Edn2 protein_coding Interval_117059 chr4 119271456 119271963 + 0 NA Intergenic Intergenic -14734 ENSMUSG00000085203.1 ENSMUSG00000085203 ENSMUST00000150252 Gm12927 antisense Interval_13436 chr10 18210614 18211167 + 0 NA promoter-TSS (ENSMUSG00000071392.6) protein_coding-promoter-TSS (ENSMUSG00000071392.6) 5445 ENSMUSG00000059554.12 ENSMUSG00000059554 ENSMUST00000052648 Ccdc28a protein_coding Interval_157069 chr8 64947071 64947768 + 0 NA exon (ENSMUSG00000110378.1, exon 1 of 1) TEC-exon (ENSMUSG00000110378.1, exon 1 of 1) 299 ENSMUSG00000110378.1 ENSMUSG00000110378 ENSMUST00000210666 Gm45242 TEC Interval_54409 chr14 68717380 68718300 + 0 NA Intergenic Intergenic -14114 ENSMUSG00000114641.1 ENSMUSG00000114641 ENSMUST00000224710 Gm46476 processed_pseudogene Interval_174181 chrX 137620717 137620990 + 0 NA intron (ENSMUSG00000059203.10, intron 1 of 5) protein_coding-intron (ENSMUSG00000059203.10, intron 1 of 10) 21463 ENSMUSG00000082135.1 ENSMUSG00000082135 ENSMUST00000117224 Gm14988 processed_pseudogene Interval_152717 chr7 136793801 136794264 + 0 NA Intergenic Intergenic -16877 ENSMUSG00000110126.1 ENSMUSG00000110126 ENSMUST00000211473 Gm9347 processed_pseudogene Interval_121425 chr4 155716481 155718026 + 0 NA TTS (ENSMUSG00000029038.9) protein_coding-TTS (ENSMUSG00000029038.9) 2888 ENSMUSG00000064916.1 ENSMUSG00000064916 ENSMUST00000082982 Gm22573 snRNA Interval_76888 chr17 84744779 84745668 + 0 NA intron (ENSMUSG00000024120.12, intron 23 of 37) protein_coding-intron (ENSMUSG00000024120.12, intron 23 of 37) -14039 ENSMUSG00000024120.12 ENSMUSG00000024120 ENSMUST00000159222 Lrpprc protein_coding Interval_145139 chr7 30251718 30252553 + 0 NA promoter-TSS (ENSMUSG00000037020.16) protein_coding-promoter-TSS (ENSMUSG00000037020.16) -11128 ENSMUSG00000081565.1 ENSMUSG00000081565 ENSMUST00000118272 Rps12-ps5 processed_pseudogene Interval_146217 chr7 44747873 44749178 + 0 NA promoter-TSS (ENSMUSG00000048012.19) protein_coding-promoter-TSS (ENSMUSG00000048012.19) -4295 ENSMUSG00000048012.19 ENSMUSG00000048012 ENSMUST00000126366 Zfp473 protein_coding Interval_118129 chr4 129112881 129113806 + 0 NA intron (ENSMUSG00000028785.13, intron 2 of 3) protein_coding-intron (ENSMUSG00000028785.13, intron 2 of 3) 6474 ENSMUSG00000028786.15 ENSMUSG00000028786 ENSMUST00000148979 Tmem54 protein_coding Interval_88890 chr2 12154566 12155766 + 0 NA intron (ENSMUSG00000026768.10, intron 26 of 30) protein_coding-intron (ENSMUSG00000026768.10, intron 25 of 29) -25424 ENSMUSG00000104174.1 ENSMUSG00000104174 ENSMUST00000192947 Gm37701 TEC Interval_38349 chr12 77645200 77645991 + 0 NA Intergenic Intergenic -20586 ENSMUSG00000112003.1 ENSMUSG00000112003 ENSMUST00000219894 Gm4864 processed_pseudogene Interval_57754 chr15 18730985 18731631 + 0 NA intron (ENSMUSG00000084873.3, intron 2 of 3) lincRNA-intron (ENSMUSG00000084873.3, intron 2 of 3) 87466 ENSMUSG00000084873.3 ENSMUSG00000084873 ENSMUST00000150382 C030047K22Rik lincRNA Interval_173909 chrX 109095188 109095898 + 0 NA promoter-TSS (ENSMUSG00000031246.14) protein_coding-promoter-TSS (ENSMUSG00000031246.14) 34 ENSMUSG00000031246.14 ENSMUSG00000031246 ENSMUST00000126097 Sh3bgrl protein_coding Interval_36533 chr12 48689653 48690239 + 0 NA Intergenic Intergenic 57653 ENSMUSG00000112005.1 ENSMUSG00000112005 ENSMUST00000218070 Gm29818 processed_pseudogene Interval_138548 chr6 89128128 89128596 + 0 NA Intergenic Intergenic -12632 ENSMUSG00000090254.7 ENSMUSG00000090254 ENSMUST00000160361 Gm1965 lincRNA Interval_12025 chr1 188944886 188945086 + 0 NA intron (ENSMUSG00000026609.15, intron 64 of 70) protein_coding-intron (ENSMUSG00000026609.15, intron 64 of 70) 62855 ENSMUSG00000026608.13 ENSMUSG00000026608 ENSMUST00000193273 Kctd3 protein_coding Interval_166977 chr9 64277881 64278260 + 0 NA Intergenic Intergenic -3533 ENSMUSG00000032397.7 ENSMUSG00000032397 ENSMUST00000034964 Tipin protein_coding Interval_100362 chr2 168651599 168652532 + 0 NA intron (ENSMUSG00000027546.15, intron 18 of 27) protein_coding-intron (ENSMUSG00000027546.15, intron 18 of 27) -11306 ENSMUSG00000105496.1 ENSMUSG00000105496 ENSMUST00000200215 Mir7004 miRNA Interval_41391 chr12 113239592 113240606 + 0 NA Intergenic Intergenic 20137 ENSMUSG00000095079.6 ENSMUSG00000095079 ENSMUST00000178282 Igha IG_C_gene Interval_152686 chr7 136264704 136264902 + 0 NA Intergenic Intergenic -3521 ENSMUSG00000110027.1 ENSMUSG00000110027 ENSMUST00000210209 C030029H02Rik lincRNA Interval_14022 chr10 25647641 25647932 + 0 NA intron (ENSMUSG00000101537.1, intron 3 of 3) antisense-intron (ENSMUSG00000101537.1, intron 3 of 3) -18912 ENSMUSG00000112101.1 ENSMUSG00000112101 ENSMUST00000219989 Gm47924 processed_pseudogene Interval_45491 chr13 55434086 55434709 + 0 NA Intergenic Intergenic -7618 ENSMUSG00000021492.15 ENSMUSG00000021492 ENSMUST00000170921 F12 protein_coding Interval_152961 chr7 140077773 140078973 + 0 NA intron (ENSMUSG00000025468.15, intron 1 of 5) protein_coding-intron (ENSMUSG00000025468.15, intron 1 of 4) 4139 ENSMUSG00000025468.15 ENSMUSG00000025468 ENSMUST00000211681 Caly protein_coding Interval_70887 chr17 15635543 15635959 + 0 NA intron (ENSMUSG00000116924.1, intron 3 of 3) lincRNA-intron (ENSMUSG00000116924.1, intron 3 of 3) 3963 ENSMUSG00000116924.1 ENSMUSG00000116924 ENSMUST00000231822 4933401D09Rik lincRNA Interval_35814 chr12 30199516 30199867 + 0 NA intron (ENSMUSG00000020672.14, intron 15 of 16) protein_coding-intron (ENSMUSG00000020672.14, intron 15 of 16) -67792 ENSMUSG00000020673.14 ENSMUSG00000020673 ENSMUST00000155263 Tpo protein_coding Interval_144466 chr7 25314956 25317472 + 0 NA promoter-TSS (ENSMUSG00000045039.9) protein_coding-promoter-TSS (ENSMUSG00000045039.9) 10106 ENSMUSG00000043843.17 ENSMUSG00000043843 ENSMUST00000108409 Tmem145 protein_coding Interval_88851 chr2 11653098 11654083 + 0 NA intron (ENSMUSG00000026770.5, intron 1 of 7) protein_coding-intron (ENSMUSG00000026770.5, intron 1 of 7) -26118 ENSMUSG00000026770.5 ENSMUSG00000026770 ENSMUST00000195427 Il2ra protein_coding Interval_75511 chr17 67667150 67668448 + 0 NA Intergenic Intergenic -29466 ENSMUSG00000032796.8 ENSMUSG00000032796 ENSMUST00000233224 Lama1 protein_coding Interval_106234 chr3 94821225 94821573 + 0 NA Intergenic Intergenic -11578 ENSMUSG00000084058.1 ENSMUSG00000084058 ENSMUST00000121556 Gm15263 processed_pseudogene Interval_73624 chr17 41398297 41398563 + 0 NA Intergenic Intergenic 52433 ENSMUSG00000098030.1 ENSMUSG00000098030 ENSMUST00000182716 Gm6771 processed_pseudogene Interval_115949 chr4 106503754 106504473 + 0 NA exon (ENSMUSG00000085933.3, exon 1 of 1) protein_coding-exon (ENSMUSG00000085933.3, exon 1 of 1) 1848 ENSMUSG00000118551.1 ENSMUSG00000118551 ENSMUST00000238822 AL954352.1 processed_transcript Interval_75534 chr17 67824616 67824984 + 0 NA Intergenic Intergenic 26263 ENSMUSG00000090955.1 ENSMUSG00000090955 ENSMUST00000166414 Gm17097 processed_pseudogene Interval_3843 chr1 63512173 63512366 + 0 NA intron (ENSMUSG00000025964.15, intron 1 of 23) protein_coding-intron (ENSMUSG00000025964.15, intron 3 of 25) 41650 ENSMUSG00000025964.15 ENSMUSG00000025964 ENSMUST00000141545 Adam23 protein_coding Interval_25551 chr11 49727038 49728153 + 0 NA Intergenic Intergenic 29715 ENSMUSG00000081570.1 ENSMUSG00000081570 ENSMUST00000120146 Gm12192 processed_pseudogene Interval_44804 chr13 48763768 48764497 + 0 NA promoter-TSS (ENSMUSG00000113297.1) processed_pseudogene-promoter-TSS (ENSMUSG00000113297.1) -551 ENSMUSG00000113297.1 ENSMUSG00000113297 ENSMUST00000222192 Rpl17-ps6 processed_pseudogene Interval_62668 chr15 96131734 96132119 + 0 NA Intergenic Intergenic -77101 ENSMUSG00000078925.11 ENSMUSG00000078925 ENSMUST00000140253 D030018L15Rik lincRNA Interval_127858 chr5 108291783 108292033 + 0 NA Intergenic Intergenic 14988 ENSMUSG00000029265.4 ENSMUSG00000029265 ENSMUST00000154862 Dr1 protein_coding Interval_3618 chr1 60019078 60019522 + 0 NA intron (ENSMUSG00000026018.12, intron 3 of 10) protein_coding-intron (ENSMUSG00000026018.12, intron 3 of 10) 23822 ENSMUSG00000026018.12 ENSMUSG00000026018 ENSMUST00000186970 Ica1l protein_coding Interval_42459 chr13 13777543 13777823 + 0 NA exon (ENSMUSG00000019726.12, exon 53 of 53) protein_coding-exon (ENSMUSG00000019726.12, exon 53 of 53) -11661 ENSMUSG00000087898.1 ENSMUSG00000087898 ENSMUST00000157273 Gm25271 misc_RNA Interval_92848 chr2 66439861 66441013 + 0 NA promoter-TSS (ENSMUSG00000087301.7) antisense-promoter-TSS (ENSMUSG00000087301.7) -459 ENSMUSG00000087301.7 ENSMUSG00000087301 ENSMUST00000152740 Gm13629 antisense Interval_34441 chr12 4188199 4189686 + 0 NA intron (ENSMUSG00000020654.15, intron 3 of 20) protein_coding-intron (ENSMUSG00000020654.15, intron 2 of 20) 27564 ENSMUSG00000020652.17 ENSMUSG00000020652 ENSMUST00000126017 Cenpo protein_coding Interval_64284 chr16 10224398 10224843 + 0 NA intron (ENSMUSG00000039200.16, intron 1 of 5) protein_coding-intron (ENSMUSG00000039200.16, intron 6 of 10) 2904 ENSMUSG00000115943.1 ENSMUSG00000115943 ENSMUST00000230210 Gm49455 antisense Interval_83831 chr19 4961937 4962775 + 0 NA promoter-TSS (ENSMUSG00000024902.5) protein_coding-promoter-TSS (ENSMUSG00000024902.5) 26 ENSMUSG00000024902.5 ENSMUSG00000024902 ENSMUST00000235229 Mrpl11 protein_coding Interval_47406 chr13 83635109 83635787 + 0 NA TTS (ENSMUSG00000005583.16) protein_coding-TTS (ENSMUSG00000005583.16) -51774 ENSMUSG00000114254.1 ENSMUSG00000114254 ENSMUST00000224411 Gm48067 processed_pseudogene Interval_143260 chr7 4820733 4823663 + 0 NA Intergenic Intergenic 8929 ENSMUSG00000053550.13 ENSMUSG00000053550 ENSMUST00000132806 Shisa7 protein_coding Interval_68156 chr16 65986513 65986700 + 0 NA Intergenic Intergenic 25381 ENSMUSG00000088181.1 ENSMUSG00000088181 ENSMUST00000157556 Gm22217 misc_RNA Interval_81058 chr18 53400537 53401502 + 0 NA Intergenic Intergenic 17096 ENSMUSG00000024538.8 ENSMUSG00000024538 ENSMUST00000025419 Ppic protein_coding Interval_38079 chr12 75536307 75537930 + 0 NA intron (ENSMUSG00000021051.10, intron 2 of 12) protein_coding-intron (ENSMUSG00000021051.10, intron 2 of 13) -28373 ENSMUSG00000112254.1 ENSMUSG00000112254 ENSMUST00000218033 Gm47690 TEC Interval_53943 chr14 63585593 63586757 + 0 NA Intergenic Intergenic -20851 ENSMUSG00000035067.9 ENSMUSG00000035067 ENSMUST00000120820 Xkr6 protein_coding Interval_109932 chr3 151911627 151912505 + 0 NA Intergenic Intergenic 14343 ENSMUSG00000087997.1 ENSMUSG00000087997 ENSMUST00000157372 Gm25056 snRNA Interval_36388 chr12 43175064 43175608 + 0 NA Intergenic Intergenic -130807 ENSMUSG00000112904.1 ENSMUSG00000112904 ENSMUST00000217732 Gm47030 lincRNA Interval_140552 chr6 119467774 119468902 + 0 NA intron (ENSMUSG00000030170.14, intron 1 of 4) protein_coding-intron (ENSMUSG00000030170.14, intron 1 of 4) -11330 ENSMUSG00000030019.6 ENSMUSG00000030019 ENSMUST00000032094 Fbxl14 protein_coding Interval_147565 chr7 68300655 68301579 + 0 NA intron (ENSMUSG00000074071.11, intron 2 of 8) protein_coding-intron (ENSMUSG00000074071.11, intron 2 of 8) 15915 ENSMUSG00000109453.1 ENSMUSG00000109453 ENSMUST00000207912 4930405G09Rik TEC Interval_149669 chr7 100527550 100528244 + 0 NA Intergenic Intergenic 3881 ENSMUSG00000109560.1 ENSMUSG00000109560 ENSMUST00000208573 Gm8463 processed_pseudogene Interval_20112 chr10 114920796 114921570 + 0 NA Intergenic Intergenic -10148 ENSMUSG00000084501.1 ENSMUSG00000084501 ENSMUST00000122552 Gm25319 misc_RNA Interval_163368 chr9 21107682 21109404 + 0 NA intron (ENSMUSG00000032175.11, intron 21 of 24) protein_coding-intron (ENSMUSG00000032175.11, intron 19 of 22) -16535 ENSMUSG00000010205.11 ENSMUSG00000010205 ENSMUST00000115487 Raver1 protein_coding Interval_68159 chr16 66012683 66014188 + 0 NA Intergenic Intergenic 52210 ENSMUSG00000088181.1 ENSMUSG00000088181 ENSMUST00000157556 Gm22217 misc_RNA Interval_144685 chr7 27519946 27521282 + 0 NA TTS (ENSMUSG00000053198.14) protein_coding-TTS (ENSMUSG00000053198.14) -2653 ENSMUSG00000040424.15 ENSMUSG00000040424 ENSMUST00000037134 Hipk4 protein_coding Interval_155787 chr8 37834070 37834581 + 0 NA intron (ENSMUSG00000039539.13, intron 2 of 9) protein_coding-intron (ENSMUSG00000039539.13, intron 2 of 7) -45633 ENSMUSG00000081316.1 ENSMUSG00000081316 ENSMUST00000117720 Gm16205 processed_pseudogene Interval_25678 chr11 50725003 50725606 + 0 NA exon (ENSMUSG00000085902.1, exon 1 of 6) antisense-exon (ENSMUSG00000085902.1, exon 1 of 6) 240 ENSMUSG00000085902.1 ENSMUSG00000085902 ENSMUST00000144876 Gm12200 antisense Interval_5559 chr1 89804950 89805420 + 0 NA intron (ENSMUSG00000055013.16, intron 12 of 16) protein_coding-intron (ENSMUSG00000055013.16, intron 13 of 17) 16022 ENSMUSG00000055013.16 ENSMUSG00000055013 ENSMUST00000212924 Agap1 protein_coding Interval_2637 chr1 42724836 42726881 + 0 NA intron (ENSMUSG00000093436.6, intron 1 of 1) sense_overlapping-intron (ENSMUSG00000093436.6, intron 1 of 1) -17806 ENSMUSG00000097063.3 ENSMUSG00000097063 ENSMUST00000192894 Pantr2 processed_transcript Interval_140415 chr6 117947844 117948190 + 0 NA Intergenic Intergenic -12064 ENSMUSG00000004988.9 ENSMUSG00000004988 ENSMUST00000203842 Fxyd4 protein_coding Interval_137641 chr6 77191541 77192435 + 0 NA intron (ENSMUSG00000063063.12, intron 8 of 18) protein_coding-intron (ENSMUSG00000063063.12, intron 7 of 17) -48045 ENSMUSG00000063063.12 ENSMUSG00000063063 ENSMUST00000160252 Ctnna2 protein_coding Interval_52323 chr14 44977309 44977984 + 0 NA intron (ENSMUSG00000090709.2, intron 2 of 2) antisense-intron (ENSMUSG00000090709.2, intron 2 of 2) -11020 ENSMUSG00000037759.6 ENSMUSG00000037759 ENSMUST00000227198 Ptger2 protein_coding Interval_54790 chr14 75067014 75067219 + 0 NA Intergenic Intergenic 30494 ENSMUSG00000034959.8 ENSMUSG00000034959 ENSMUST00000228689 Rubcnl protein_coding Interval_69831 chr16 97263168 97263785 + 0 NA Intergenic Intergenic -141793 ENSMUSG00000116686.1 ENSMUSG00000116686 ENSMUST00000232315 Gm49681 processed_pseudogene Interval_7940 chr1 134673690 134674931 + 0 NA intron (ENSMUSG00000026452.15, intron 2 of 9) protein_coding-intron (ENSMUSG00000026452.15, intron 1 of 2) 27629 ENSMUSG00000026452.15 ENSMUSG00000026452 ENSMUST00000187702 Syt2 protein_coding Interval_137699 chr6 80378623 80379393 + 0 NA intron (ENSMUSG00000052581.13, intron 2 of 2) protein_coding-intron (ENSMUSG00000052581.13, intron 3 of 3) 59816 ENSMUSG00000107840.1 ENSMUSG00000107840 ENSMUST00000203230 Gm44241 TEC Interval_48500 chr13 99475758 99476103 + 0 NA intron (ENSMUSG00000052727.6, intron 2 of 6) protein_coding-intron (ENSMUSG00000052727.6, intron 2 of 6) 28509 ENSMUSG00000114282.1 ENSMUSG00000114282 ENSMUST00000223710 5330431K02Rik TEC Interval_77849 chr18 4509869 4510116 + 0 NA Intergenic Intergenic 25523 ENSMUSG00000117640.1 ENSMUSG00000117640 ENSMUST00000234230 Gm7411 processed_pseudogene Interval_125987 chr5 76588250 76589390 + 0 NA exon (ENSMUSG00000036403.15, exon 1 of 26) protein_coding-exon (ENSMUSG00000036403.15, exon 1 of 26) 122 ENSMUSG00000036403.15 ENSMUSG00000036403 ENSMUST00000049060 Cep135 protein_coding Interval_60070 chr15 64516655 64516902 + 0 NA Intergenic Intergenic 116730 ENSMUSG00000115328.1 ENSMUSG00000115328 ENSMUST00000227641 Gm30691 lincRNA Interval_169679 chr9 100315629 100315991 + 0 NA Intergenic Intergenic 7714 ENSMUSG00000101042.1 ENSMUSG00000101042 ENSMUST00000187644 Gm28167 lincRNA Interval_95302 chr2 105949206 105949415 + 0 NA intron (ENSMUSG00000042670.5, intron 5 of 6) protein_coding-intron (ENSMUSG00000042670.5, intron 5 of 6) -43447 ENSMUSG00000093363.1 ENSMUSG00000093363 ENSMUST00000175622 Gm22002 miRNA Interval_172921 chrX 55681267 55681484 + 0 NA Intergenic Intergenic -18369 ENSMUSG00000081298.1 ENSMUSG00000081298 ENSMUST00000117117 Gm14622 unprocessed_pseudogene Interval_102521 chr3 27453539 27454330 + 0 NA intron (ENSMUSG00000039286.12, intron 22 of 26) protein_coding-intron (ENSMUSG00000039286.12, intron 21 of 25) 82583 ENSMUSG00000051136.1 ENSMUSG00000051136 ENSMUST00000057186 Ghsr protein_coding Interval_104775 chr3 72867503 72868809 + 0 NA Intergenic Intergenic 83553 ENSMUSG00000027790.14 ENSMUSG00000027790 ENSMUST00000170445 Sis protein_coding Interval_167641 chr9 71469718 71469949 + 0 NA Intergenic Intergenic 16072 ENSMUSG00000032199.13 ENSMUSG00000032199 ENSMUST00000233263 Polr2m protein_coding Interval_61583 chr15 82732964 82733838 + 0 NA Intergenic Intergenic 8715 ENSMUSG00000116071.1 ENSMUSG00000116071 ENSMUST00000229208 Gm49433 unprocessed_pseudogene Interval_127017 chr5 99630040 99631212 + 0 NA intron (ENSMUSG00000089809.9, intron 1 of 2) protein_coding-intron (ENSMUSG00000089809.9, intron 1 of 1) 4790 ENSMUSG00000090146.1 ENSMUSG00000090146 ENSMUST00000159244 4930405H06Rik antisense Interval_23539 chr11 23260841 23262404 + 0 NA intron (ENSMUSG00000020290.14, intron 2 of 3) protein_coding-intron (ENSMUSG00000020290.14, intron 2 of 25) -23022 ENSMUSG00000020290.14 ENSMUSG00000020290 ENSMUST00000150750 Xpo1 protein_coding Interval_58890 chr15 39755089 39755568 + 0 NA intron (ENSMUSG00000022303.9, intron 2 of 2) protein_coding-intron (ENSMUSG00000022303.9, intron 2 of 3) 9394 ENSMUSG00000022303.9 ENSMUSG00000022303 ENSMUST00000227792 Dcstamp protein_coding Interval_161424 chr8 120391804 120392050 + 0 NA intron (ENSMUSG00000031822.20, intron 2 of 2) protein_coding-intron (ENSMUSG00000092329.1, intron 1 of 15) 51622 ENSMUSG00000080549.2 ENSMUSG00000080549 ENSMUST00000116899 Gm22715 miRNA Interval_148623 chr7 83517699 83517923 + 0 NA Intergenic Intergenic 32445 ENSMUSG00000094841.2 ENSMUSG00000094841 ENSMUST00000208877 Gm10610 lincRNA Interval_96353 chr2 121911536 121912591 + 0 NA intron (ENSMUSG00000060227.15, intron 7 of 7) protein_coding-intron (ENSMUSG00000060227.15, intron 8 of 9) 13256 ENSMUSG00000060227.15 ENSMUSG00000060227 ENSMUST00000136023 Casc4 protein_coding Interval_14331 chr10 30947101 30947508 + 0 NA Intergenic Intergenic -4819 ENSMUSG00000094008.1 ENSMUSG00000094008 ENSMUST00000178825 Gm24168 snRNA Interval_53781 chr14 61697066 61697301 + 0 NA Intergenic Intergenic 13673 ENSMUSG00000104187.1 ENSMUSG00000104187 ENSMUST00000194021 Gm37820 TEC Interval_172409 chrX 18173231 18173464 + 0 NA intron (ENSMUSG00000037369.17, intron 2 of 7) protein_coding-intron (ENSMUSG00000037369.17, intron 2 of 28) 27490 ENSMUSG00000025043.3 ENSMUSG00000025043 ENSMUST00000026018 Dusp21 protein_coding Interval_143262 chr7 4829858 4831557 + 0 NA TTS (ENSMUSG00000053550.13) protein_coding-TTS (ENSMUSG00000053550.13) 420 ENSMUSG00000053550.13 ENSMUSG00000053550 ENSMUST00000132806 Shisa7 protein_coding Interval_98187 chr2 149611766 149612120 + 0 NA Intergenic Intergenic -45658 ENSMUSG00000089270.1 ENSMUSG00000089270 ENSMUST00000158645 Gm24551 snoRNA Interval_62803 chr15 97084781 97086397 + 0 NA Intergenic Intergenic -65638 ENSMUSG00000022464.14 ENSMUSG00000022464 ENSMUST00000230907 Slc38a4 protein_coding Interval_138513 chr6 88835354 88835679 + 0 NA TTS (ENSMUSG00000030083.11) protein_coding-TTS (ENSMUSG00000030083.11) 3639 ENSMUSG00000030083.11 ENSMUSG00000030083 ENSMUST00000204932 Abtb1 protein_coding Interval_142240 chr6 139655549 139655940 + 0 NA intron (ENSMUSG00000030228.18, intron 6 of 6) protein_coding-intron (ENSMUSG00000030228.18, intron 8 of 8) -78539 ENSMUSG00000108147.1 ENSMUSG00000108147 ENSMUST00000203475 4930443G03Rik TEC Interval_114750 chr4 84739063 84739279 + 0 NA Intergenic Intergenic -2304 ENSMUSG00000086413.1 ENSMUSG00000086413 ENSMUST00000141637 Gm12415 lincRNA Interval_73919 chr17 45480555 45481104 + 0 NA Intergenic Intergenic -5965 ENSMUSG00000023935.10 ENSMUSG00000023935 ENSMUST00000233583 Spats1 protein_coding Interval_30159 chr11 89996854 89997120 + 0 NA intron (ENSMUSG00000020553.8, intron 1 of 5) protein_coding-intron (ENSMUSG00000020553.8, intron 1 of 5) 5907 ENSMUSG00000020553.8 ENSMUSG00000020553 ENSMUST00000020864 Pctp protein_coding Interval_113713 chr4 57808078 57809617 + 0 NA intron (ENSMUSG00000038729.24, intron 1 of 1) protein_coding-intron (ENSMUSG00000038729.24, intron 2 of 2) -12203 ENSMUSG00000038729.24 ENSMUSG00000038729 ENSMUST00000102902 Pakap protein_coding Interval_149486 chr7 99040814 99041080 + 0 NA intron (ENSMUSG00000035354.9, intron 7 of 11) protein_coding-intron (ENSMUSG00000035354.9, intron 6 of 14) -24303 ENSMUSG00000035354.9 ENSMUSG00000035354 ENSMUST00000208502 Uvrag protein_coding Interval_157616 chr8 71728145 71729437 + 0 NA Intergenic Intergenic -3087 ENSMUSG00000070000.13 ENSMUSG00000070000 ENSMUST00000125092 Fcho1 protein_coding Interval_93696 chr2 75959582 75960990 + 0 NA Intergenic Intergenic 17884 ENSMUSG00000075272.4 ENSMUSG00000075272 ENSMUST00000099995 Ttc30a2 protein_coding Interval_84975 chr19 20849053 20849412 + 0 NA intron (ENSMUSG00000024749.9, intron 9 of 20) protein_coding-intron (ENSMUSG00000024749.9, intron 9 of 20) -34565 ENSMUSG00000024749.9 ENSMUSG00000024749 ENSMUST00000235546 Tmc1 protein_coding Interval_29703 chr11 86219424 86219881 + 0 NA intron (ENSMUSG00000018068.13, intron 5 of 5) protein_coding-intron (ENSMUSG00000018068.13, intron 19 of 24) 12524 ENSMUSG00000018068.13 ENSMUSG00000018068 ENSMUST00000141756 Ints2 protein_coding Interval_125819 chr5 74607406 74608102 + 0 NA exon (ENSMUSG00000029228.15, exon 7 of 11) protein_coding-exon (ENSMUSG00000029228.15, exon 7 of 11) 22972 ENSMUSG00000029227.15 ENSMUSG00000029227 ENSMUST00000125129 Fip1l1 protein_coding Interval_58522 chr15 35486616 35488236 + 0 NA promoter-TSS (ENSMUSG00000089133.1) snoRNA-promoter-TSS (ENSMUSG00000089133.1) 26 ENSMUSG00000089133.1 ENSMUSG00000089133 ENSMUST00000158508 Gm24771 snoRNA Interval_70848 chr17 15343130 15344328 + 0 NA Intergenic Intergenic -21847 ENSMUSG00000116647.1 ENSMUSG00000116647 ENSMUST00000232519 Gm7423 processed_pseudogene Interval_34271 chr11 121889151 121890332 + 0 NA Intergenic Intergenic -2773 ENSMUSG00000082947.1 ENSMUSG00000082947 ENSMUST00000120180 Gm12587 processed_pseudogene Interval_156436 chr8 48177967 48179725 + 0 NA Intergenic Intergenic 68684 ENSMUSG00000031562.15 ENSMUSG00000031562 ENSMUST00000174379 Dctd protein_coding Interval_132806 chr5 147980798 147982013 + 0 NA intron (ENSMUSG00000029651.16, intron 1 of 14) protein_coding-intron (ENSMUSG00000029651.16, intron 1 of 14) -24239 ENSMUSG00000085565.1 ENSMUSG00000085565 ENSMUST00000138406 Gm15721 lincRNA Interval_10537 chr1 171570313 171570806 + 0 NA intron (ENSMUSG00000004709.14, intron 1 of 6) protein_coding-intron (ENSMUSG00000004709.14, intron 1 of 8) -8504 ENSMUSG00000004709.14 ENSMUSG00000004709 ENSMUST00000195804 Cd244a protein_coding Interval_161684 chr8 122016261 122016550 + 0 NA intron (ENSMUSG00000025316.16, intron 5 of 6) protein_coding-intron (ENSMUSG00000025316.16, intron 10 of 12) 38381 ENSMUSG00000099140.1 ENSMUSG00000099140 ENSMUST00000184699 Mir7237 miRNA Interval_25835 chr11 52045774 52047226 + 0 NA intron (ENSMUSG00000020389.19, intron 3 of 4) protein_coding-intron (ENSMUSG00000020389.19, intron 13 of 13) -7029 ENSMUSG00000084800.1 ENSMUSG00000084800 ENSMUST00000133940 Gm12205 antisense Interval_8758 chr1 150539899 150541385 + 0 NA Intergenic Intergenic -8675 ENSMUSG00000101519.1 ENSMUSG00000101519 ENSMUST00000186208 Ska2l-ps processed_pseudogene Interval_91449 chr2 38943671 38945060 + 0 NA intron (ENSMUSG00000046618.7, intron 2 of 7) protein_coding-intron (ENSMUSG00000046618.7, intron 2 of 7) 5022 ENSMUSG00000083776.1 ENSMUSG00000083776 ENSMUST00000119289 Gm13473 processed_pseudogene Interval_45791 chr13 58094565 58095619 + 0 NA intron (ENSMUSG00000014164.15, intron 2 of 14) protein_coding-intron (ENSMUSG00000014164.15, intron 4 of 16) 18500 ENSMUSG00000014164.15 ENSMUSG00000014164 ENSMUST00000160860 Klhl3 protein_coding Interval_10907 chr1 176861954 176862575 + 0 NA TTS (ENSMUSG00000026504.17) protein_coding-TTS (ENSMUSG00000026504.17) -7705 ENSMUSG00000103584.1 ENSMUSG00000103584 ENSMUST00000193938 Gm38053 unprocessed_pseudogene Interval_87360 chr19 47944777 47945105 + 0 NA TTS (ENSMUSG00000046585.9) protein_coding-TTS (ENSMUSG00000046585.9) 7266 ENSMUSG00000046585.9 ENSMUSG00000046585 ENSMUST00000066308 Cfap58 protein_coding Interval_106831 chr3 101162984 101165048 + 0 NA Intergenic Intergenic 43383 ENSMUSG00000082415.1 ENSMUSG00000082415 ENSMUST00000120887 Gm12486 processed_pseudogene Interval_27141 chr11 63263591 63265136 + 0 NA Intergenic Intergenic -22888 ENSMUSG00000083052.1 ENSMUSG00000083052 ENSMUST00000117347 Gm12285 processed_pseudogene Interval_12777 chr10 5245833 5246084 + 0 NA exon (ENSMUSG00000096054.3, exon 71 of 146) protein_coding-exon (ENSMUSG00000096054.3, exon 71 of 146) -60432 ENSMUSG00000096054.3 ENSMUSG00000096054 ENSMUST00000214945 Syne1 protein_coding Interval_2808 chr1 45653142 45653546 + 0 NA Intergenic Intergenic 32218 ENSMUSG00000095121.1 ENSMUSG00000095121 ENSMUST00000179545 Gm23216 snRNA Interval_154287 chr8 14047053 14047553 + 0 NA intron (ENSMUSG00000051978.9, intron 3 of 5) protein_coding-intron (ENSMUSG00000051978.9, intron 3 of 5) 20515 ENSMUSG00000109982.1 ENSMUSG00000109982 ENSMUST00000210109 Gm45520 TEC Interval_45551 chr13 55788818 55788999 + 0 NA intron (ENSMUSG00000021499.12, intron 2 of 7) protein_coding-intron (ENSMUSG00000021499.12, intron 2 of 7) 4329 ENSMUSG00000021499.12 ENSMUSG00000021499 ENSMUST00000109898 Catsper3 protein_coding Interval_110662 chr4 5797871 5799736 + 0 NA TTS (ENSMUSG00000049119.14) protein_coding-TTS (ENSMUSG00000049119.14) 25924 ENSMUSG00000049119.14 ENSMUSG00000049119 ENSMUST00000145365 Fam110b protein_coding Interval_165510 chr9 48888851 48890228 + 0 NA Intergenic Intergenic -6912 ENSMUSG00000111570.1 ENSMUSG00000111570 ENSMUST00000216896 Gm32335 antisense Interval_27315 chr11 66108384 66108850 + 0 NA intron (ENSMUSG00000056752.16, intron 15 of 68) protein_coding-intron (ENSMUSG00000056752.16, intron 15 of 68) -59418 ENSMUSG00000084967.1 ENSMUSG00000084967 ENSMUST00000144922 Gm12296 processed_transcript Interval_63620 chr15 102390591 102391422 + 0 NA Intergenic Intergenic -15137 ENSMUSG00000001280.13 ENSMUSG00000001280 ENSMUST00000168802 Sp1 protein_coding Interval_105125 chr3 81995791 81996044 + 0 NA intron (ENSMUSG00000028008.10, intron 2 of 4) protein_coding-intron (ENSMUSG00000028008.10, intron 2 of 4) 13627 ENSMUSG00000028008.10 ENSMUSG00000028008 ENSMUST00000107736 Asic5 protein_coding Interval_113604 chr4 56938946 56939722 + 0 NA intron (ENSMUSG00000055296.14, intron 1 of 16) protein_coding-intron (ENSMUSG00000055296.14, intron 1 of 17) 8090 ENSMUSG00000055296.14 ENSMUSG00000055296 ENSMUST00000155625 Tmem245 protein_coding Interval_41948 chr13 5131352 5132164 + 0 NA Intergenic Intergenic 58176 ENSMUSG00000077473.1 ENSMUSG00000077473 ENSMUST00000104285 Gm24790 snoRNA Interval_86542 chr19 41591953 41592322 + 0 NA Intergenic Intergenic 3486 ENSMUSG00000098286.1 ENSMUSG00000098286 ENSMUST00000183602 Mir8091 miRNA Interval_162624 chr9 6866380 6866936 + 0 NA Intergenic Intergenic 64815 ENSMUSG00000111464.1 ENSMUSG00000111464 ENSMUST00000213261 Gm48675 processed_pseudogene Interval_122367 chr5 21719668 21720161 + 0 NA Intergenic Intergenic -18520 ENSMUSG00000044968.16 ENSMUSG00000044968 ENSMUST00000060899 Napepld protein_coding Interval_81256 chr18 56781681 56782742 + 0 NA intron (ENSMUSG00000032656.14, intron 3 of 3) protein_coding-intron (ENSMUSG00000032656.14, intron 3 of 3) 12494 ENSMUSG00000087597.1 ENSMUSG00000087597 ENSMUST00000128240 Gm15345 antisense Interval_5036 chr1 84524582 84525320 + 0 NA intron (ENSMUSG00000036766.12, intron 5 of 12) protein_coding-intron (ENSMUSG00000036766.12, intron 5 of 12) 98890 ENSMUSG00000036766.12 ENSMUSG00000036766 ENSMUST00000191546 Dner protein_coding Interval_120267 chr4 145049707 145050881 + 0 NA intron (ENSMUSG00000020220.16, intron 45 of 51) protein_coding-intron (ENSMUSG00000020220.16, intron 61 of 67) -91446 ENSMUSG00000103911.1 ENSMUSG00000103911 ENSMUST00000193467 Gm38074 TEC Interval_38912 chr12 83752821 83753068 + 0 NA Intergenic Intergenic -6000 ENSMUSG00000113999.1 ENSMUSG00000113999 ENSMUST00000222400 Gm47681 processed_pseudogene Interval_107908 chr3 116724814 116725401 + 0 NA Intergenic Intergenic -12895 ENSMUSG00000027957.13 ENSMUSG00000027957 ENSMUST00000169530 Slc35a3 protein_coding Interval_89907 chr2 26380113 26381101 + 0 NA promoter-TSS (ENSMUSG00000036281.13) protein_coding-promoter-TSS (ENSMUSG00000036281.13) 19 ENSMUSG00000036281.13 ENSMUSG00000036281 ENSMUST00000155643 Snapc4 protein_coding Interval_36540 chr12 49056977 49058195 + 0 NA Intergenic Intergenic 47703 ENSMUSG00000064616.1 ENSMUSG00000064616 ENSMUST00000082682 Gm26454 snRNA Interval_107649 chr3 109339964 109341492 + 0 NA promoter-TSS (ENSMUSG00000033721.16) protein_coding-promoter-TSS (ENSMUSG00000033721.16) -147861 ENSMUSG00000083717.1 ENSMUSG00000083717 ENSMUST00000120957 Gm13865 processed_pseudogene Interval_59576 chr15 55534148 55535289 + 0 NA intron (ENSMUSG00000022370.13, intron 6 of 6) protein_coding-intron (ENSMUSG00000022370.13, intron 5 of 5) 23030 ENSMUSG00000022370.13 ENSMUSG00000022370 ENSMUST00000170135 Mrpl13 protein_coding Interval_102962 chr3 33811335 33811571 + 0 NA TTS (ENSMUSG00000027676.11) protein_coding-TTS (ENSMUSG00000027676.11) -5803 ENSMUSG00000105286.1 ENSMUSG00000105286 ENSMUST00000197317 Gm43140 antisense Interval_17171 chr10 73613407 73613599 + 0 NA intron (ENSMUSG00000052613.16, intron 2 of 2) protein_coding-intron (ENSMUSG00000052613.16, intron 2 of 13) 77302 ENSMUSG00000093548.1 ENSMUSG00000093548 ENSMUST00000176468 Gm6407 processed_pseudogene Interval_95291 chr2 105761738 105762026 + 0 NA intron (ENSMUSG00000027167.11, intron 7 of 7) protein_coding-intron (ENSMUSG00000027167.11, intron 7 of 7) 52440 ENSMUSG00000027167.11 ENSMUSG00000027167 ENSMUST00000148441 Elp4 protein_coding Interval_126304 chr5 86352898 86353237 + 0 NA intron (ENSMUSG00000061259.11, intron 1 of 9) protein_coding-intron (ENSMUSG00000061259.11, intron 1 of 9) -25331 ENSMUSG00000061259.11 ENSMUSG00000061259 ENSMUST00000031175 Tmprss11d protein_coding Interval_103857 chr3 53729827 53730288 + 0 NA intron (ENSMUSG00000105168.1, intron 4 of 4) lincRNA-intron (ENSMUSG00000105168.1, intron 4 of 4) 4580 ENSMUSG00000105168.1 ENSMUSG00000105168 ENSMUST00000199488 Gm30735 lincRNA Interval_65179 chr16 20373995 20375999 + 0 NA exon (ENSMUSG00000022822.16, exon 16 of 30) protein_coding-exon (ENSMUSG00000022822.16, exon 16 of 30) 23951 ENSMUSG00000022822.16 ENSMUSG00000022822 ENSMUST00000231522 Abcc5 protein_coding Interval_41378 chr12 113166450 113168256 + 0 NA Intergenic Intergenic 5953 ENSMUSG00000105111.1 ENSMUSG00000105111 ENSMUST00000198975 Gm43310 processed_pseudogene Interval_165325 chr9 46308796 46309614 + 0 NA intron (ENSMUSG00000056617.12, intron 3 of 8) protein_coding-intron (ENSMUSG00000056617.12, intron 6 of 12) 2382 ENSMUSG00000056617.12 ENSMUSG00000056617 ENSMUST00000160795 4931429L15Rik protein_coding Interval_117905 chr4 126977438 126979519 + 0 NA Intergenic Intergenic -4961 ENSMUSG00000081609.1 ENSMUSG00000081609 ENSMUST00000117303 Gm12939 processed_pseudogene Interval_98190 chr2 149657470 149657776 + 0 NA Intergenic Intergenic -85552 ENSMUSG00000081494.1 ENSMUSG00000081494 ENSMUST00000118417 Gm14130 processed_pseudogene Interval_107051 chr3 103179442 103179693 + 0 NA TTS (ENSMUSG00000005687.14) protein_coding-TTS (ENSMUSG00000005687.14) 876 ENSMUSG00000098153.1 ENSMUSG00000098153 ENSMUST00000182561 Gm27024 processed_pseudogene Interval_82120 chr18 67843857 67844088 + 0 NA intron (ENSMUSG00000024542.9, intron 2 of 25) protein_coding-intron (ENSMUSG00000024542.9, intron 21 of 45) -26355 ENSMUSG00000024542.9 ENSMUSG00000024542 ENSMUST00000225589 Cep192 protein_coding Interval_6604 chr1 118203786 118204101 + 0 NA Intergenic Intergenic 27401 ENSMUSG00000102030.1 ENSMUSG00000102030 ENSMUST00000186264 Gm29106 protein_coding Interval_146473 chr7 46204231 46204478 + 0 NA promoter-TSS (ENSMUSG00000110060.1) TEC-promoter-TSS (ENSMUSG00000110060.1) -195 ENSMUSG00000110060.1 ENSMUSG00000110060 ENSMUST00000211426 Gm9860 TEC Interval_2101 chr1 36429722 36431930 + 0 NA intron (ENSMUSG00000001143.13, intron 4 of 8) protein_coding-intron (ENSMUSG00000001143.13, intron 3 of 6) 14431 ENSMUSG00000001143.13 ENSMUSG00000001143 ENSMUST00000193502 Lman2l protein_coding Interval_66964 chr16 38844210 38845556 + 0 NA intron (ENSMUSG00000086175.2, intron 2 of 5) antisense-intron (ENSMUSG00000086175.2, intron 2 of 5) 15977 ENSMUSG00000086175.2 ENSMUSG00000086175 ENSMUST00000148657 Gm15802 antisense Interval_85749 chr19 30311765 30312312 + 0 NA Intergenic Intergenic 47158 ENSMUSG00000089016.1 ENSMUSG00000089016 ENSMUST00000158391 Gm24883 misc_RNA Interval_7952 chr1 134757271 134757839 + 0 NA exon (ENSMUSG00000073557.12, exon 24 of 24) protein_coding-exon (ENSMUSG00000073557.12, exon 24 of 24) 44430 ENSMUSG00000103614.1 ENSMUSG00000103614 ENSMUST00000192808 Gm37949 TEC Interval_93443 chr2 73085919 73086222 + 0 NA Intergenic Intergenic -30678 ENSMUSG00000082455.3 ENSMUSG00000082455 ENSMUST00000120830 Gm13665 processed_pseudogene Interval_174640 chrX 161716608 161718622 + 0 NA promoter-TSS (ENSMUSG00000043518.7) protein_coding-promoter-TSS (ENSMUSG00000043518.7) 546 ENSMUSG00000043518.7 ENSMUSG00000043518 ENSMUST00000061514 Rai2 protein_coding Interval_43295 chr13 28843142 28843867 + 0 NA intron (ENSMUSG00000085936.7, intron 2 of 7) processed_transcript-intron (ENSMUSG00000085936.7, intron 1 of 5) 6629 ENSMUSG00000082861.3 ENSMUSG00000082861 ENSMUST00000118838 Gm11362 processed_pseudogene Interval_5949 chr1 93449785 93450713 + 0 NA intron (ENSMUSG00000034088.15, intron 1 of 27) protein_coding-intron (ENSMUSG00000034088.15, intron 1 of 27) -4567 ENSMUSG00000034088.15 ENSMUSG00000034088 ENSMUST00000188844 Hdlbp protein_coding Interval_9532 chr1 158784900 158785115 + 0 NA intron (ENSMUSG00000073530.11, intron 3 of 5) protein_coding-intron (ENSMUSG00000073530.11, intron 14 of 21) 175374 ENSMUSG00000073530.11 ENSMUSG00000073530 ENSMUST00000159892 Pappa2 protein_coding Interval_84598 chr19 14199818 14200030 + 0 NA Intergenic Intergenic -181553 ENSMUSG00000098074.1 ENSMUSG00000098074 ENSMUST00000182766 Gm26993 processed_pseudogene Interval_108400 chr3 126638750 126639157 + 0 NA intron (ENSMUSG00000053819.16, intron 2 of 20) protein_coding-intron (ENSMUSG00000053819.16, intron 2 of 18) -5508 ENSMUSG00000105586.1 ENSMUSG00000105586 ENSMUST00000199979 Gm43009 TEC Interval_50772 chr14 19746652 19747195 + 0 NA Intergenic Intergenic -4361 ENSMUSG00000021806.4 ENSMUSG00000021806 ENSMUST00000224057 Nid2 protein_coding Interval_43370 chr13 29780749 29781318 + 0 NA intron (ENSMUSG00000006191.17, intron 4 of 10) protein_coding-intron (ENSMUSG00000006191.17, intron 4 of 15) -159250 ENSMUSG00000086893.1 ENSMUSG00000086893 ENSMUST00000144277 Gm11365 antisense Interval_145543 chr7 35501766 35502854 + 0 NA intron (ENSMUSG00000030491.16, intron 2 of 4) protein_coding-intron (ENSMUSG00000030491.16, intron 9 of 11) -2593 ENSMUSG00000100068.1 ENSMUSG00000100068 ENSMUST00000186253 Gm18558 processed_pseudogene Interval_10662 chr1 172525524 172526063 + 0 NA promoter-TSS (ENSMUSG00000026546.16) protein_coding-promoter-TSS (ENSMUSG00000026546.16) 4992 ENSMUSG00000026546.16 ENSMUSG00000026546 ENSMUST00000160303 Cfap45 protein_coding Interval_56431 chr14 118695819 118698466 + 0 NA intron (ENSMUSG00000032849.14, intron 1 of 29) protein_coding-intron (ENSMUSG00000032849.14, intron 1 of 30) 2350 ENSMUSG00000032849.14 ENSMUSG00000032849 ENSMUST00000227480 Abcc4 protein_coding Interval_135550 chr6 40347042 40347703 + 0 NA intron (ENSMUSG00000029916.11, intron 2 of 2) protein_coding-intron (ENSMUSG00000029916.11, intron 2 of 15) 21864 ENSMUSG00000029916.11 ENSMUSG00000029916 ENSMUST00000201751 Agk protein_coding Interval_63065 chr15 98917283 98918574 + 0 NA promoter-TSS (ENSMUSG00000022999.15) protein_coding-promoter-TSS (ENSMUSG00000022999.15) -11424 ENSMUSG00000022999.15 ENSMUSG00000022999 ENSMUST00000126159 Lmbr1l protein_coding Interval_58147 chr15 29433226 29434040 + 0 NA Intergenic Intergenic 279771 ENSMUSG00000092639.1 ENSMUSG00000092639 ENSMUST00000174898 Mir3964 miRNA Interval_99718 chr2 164469604 164470980 + 0 NA TTS (ENSMUSG00000017720.2) protein_coding-TTS (ENSMUSG00000017720.2) 3432 ENSMUSG00000017720.2 ENSMUSG00000017720 ENSMUST00000017864 Trp53tg5 protein_coding Interval_157918 chr8 75938910 75939458 + 0 NA intron (ENSMUSG00000031620.16, intron 13 of 13) protein_coding-intron (ENSMUSG00000031620.16, intron 12 of 12) -70842 ENSMUSG00000110603.1 ENSMUSG00000110603 ENSMUST00000212661 Gm45741 lincRNA Interval_106572 chr3 97358427 97358711 + 0 NA Intergenic Intergenic -60652 ENSMUSG00000038256.15 ENSMUSG00000038256 ENSMUST00000127319 Bcl9 protein_coding Interval_139504 chr6 100610256 100611148 + 0 NA intron (ENSMUSG00000035378.17, intron 10 of 10) protein_coding-intron (ENSMUSG00000035378.17, intron 7 of 7) 6019 ENSMUSG00000079224.5 ENSMUSG00000079224 ENSMUST00000121217 Gm6565 processed_pseudogene Interval_83620 chr19 3253776 3255104 + 0 NA exon (ENSMUSG00000117886.1, exon 1 of 1) processed_pseudogene-exon (ENSMUSG00000117886.1, exon 1 of 1) 627 ENSMUSG00000117886.1 ENSMUSG00000117886 ENSMUST00000237524 Gm2106 processed_pseudogene Interval_159146 chr8 91069620 91071136 + 0 NA exon (ENSMUSG00000031666.15, exon 1 of 22) protein_coding-exon (ENSMUSG00000031666.15, exon 1 of 22) 256 ENSMUSG00000031666.15 ENSMUSG00000031666 ENSMUST00000126689 Rbl2 protein_coding Interval_37286 chr12 64815865 64817728 + 0 NA promoter-TSS (ENSMUSG00000114029.1) processed_pseudogene-promoter-TSS (ENSMUSG00000114029.1) -19 ENSMUSG00000114029.1 ENSMUSG00000114029 ENSMUST00000222704 Gm4806 processed_pseudogene Interval_81528 chr18 61446246 61446709 + 0 NA Intergenic Intergenic -12276 ENSMUSG00000118286.1 ENSMUSG00000118286 ENSMUST00000235755 Gm8755 processed_pseudogene Interval_50854 chr14 20216555 20217795 + 0 NA intron (ENSMUSG00000114439.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000114439.1, intron 1 of 1) 1673 ENSMUSG00000114439.1 ENSMUSG00000114439 ENSMUST00000223732 Gm48395 lincRNA Interval_9770 chr1 161999632 162000215 + 0 NA intron (ENSMUSG00000040265.16, intron 20 of 20) protein_coding-intron (ENSMUSG00000040265.16, intron 19 of 19) -5046 ENSMUSG00000090260.1 ENSMUSG00000090260 ENSMUST00000160555 2810442N19Rik antisense Interval_169171 chr9 94976185 94976645 + 0 NA intron (ENSMUSG00000031129.9, intron 9 of 15) protein_coding-intron (ENSMUSG00000031129.9, intron 9 of 15) 16269 ENSMUSG00000111087.1 ENSMUSG00000111087 ENSMUST00000214362 Gm47168 processed_pseudogene Interval_3221 chr1 54979782 54980319 + 0 NA Intergenic Intergenic 47344 ENSMUSG00000025982.13 ENSMUSG00000025982 ENSMUST00000188419 Sf3b1 protein_coding Interval_38816 chr12 82611230 82612299 + 0 NA intron (ENSMUSG00000021219.16, intron 1 of 3) protein_coding-intron (ENSMUSG00000021219.16, intron 1 of 3) -5735 ENSMUSG00000021219.16 ENSMUSG00000021219 ENSMUST00000201512 Rgs6 protein_coding Interval_132541 chr5 146086447 146086678 + 0 NA intron (ENSMUSG00000061292.10, intron 2 of 11) protein_coding-intron (ENSMUSG00000061292.10, intron 2 of 12) 7305 ENSMUSG00000061292.10 ENSMUSG00000061292 ENSMUST00000035571 Cyp3a59 protein_coding Interval_54717 chr14 73552300 73553579 + 0 NA intron (ENSMUSG00000022110.13, intron 1 of 10) protein_coding-intron (ENSMUSG00000022110.13, intron 1 of 11) 307 ENSMUSG00000022110.13 ENSMUSG00000022110 ENSMUST00000159165 Sucla2 protein_coding Interval_44234 chr13 42589306 42589896 + 0 NA Intergenic Intergenic 20138 ENSMUSG00000113367.1 ENSMUSG00000113367 ENSMUST00000222839 Gm47125 processed_pseudogene Interval_110179 chr3 153984465 153984877 + 0 NA intron (ENSMUSG00000028360.10, intron 1 of 21) protein_coding-intron (ENSMUSG00000028360.10, intron 1 of 21) -46862 ENSMUSG00000062908.12 ENSMUSG00000062908 ENSMUST00000135724 Acadm protein_coding Interval_42277 chr13 11545849 11546153 + 0 NA Intergenic Intergenic -22257 ENSMUSG00000113799.1 ENSMUSG00000113799 ENSMUST00000221403 Gm47487 TEC Interval_35915 chr12 31900082 31900731 + 0 NA intron (ENSMUSG00000035933.5, intron 1 of 4) protein_coding-intron (ENSMUSG00000035933.5, intron 18 of 22) -25288 ENSMUSG00000035933.5 ENSMUSG00000035933 ENSMUST00000219837 Cog5 protein_coding Interval_85259 chr19 24209439 24209992 + 0 NA intron (ENSMUSG00000024812.11, intron 1 of 23) protein_coding-intron (ENSMUSG00000024812.11, intron 1 of 22) 55645 ENSMUSG00000118371.1 ENSMUSG00000118371 ENSMUST00000237530 Gm50308 processed_pseudogene Interval_95191 chr2 104638894 104639236 + 0 NA intron (ENSMUSG00000027176.8, intron 3 of 20) protein_coding-intron (ENSMUSG00000027176.8, intron 3 of 20) 48447 ENSMUSG00000027176.8 ENSMUSG00000027176 ENSMUST00000126539 Cstf3 protein_coding Interval_82971 chr18 80100873 80101584 + 0 NA intron (ENSMUSG00000056214.9, intron 2 of 2) protein_coding-intron (ENSMUSG00000056214.9, intron 2 of 2) -11266 ENSMUSG00000096597.1 ENSMUSG00000096597 ENSMUST00000178391 Gm21886 protein_coding Interval_148206 chr7 79818286 79818969 + 0 NA Intergenic Intergenic 6872 ENSMUSG00000039062.15 ENSMUSG00000039062 ENSMUST00000149164 Anpep protein_coding Interval_124542 chr5 50215933 50217171 + 0 NA promoter-TSS (ENSMUSG00000105020.1) unprocessed_pseudogene-promoter-TSS (ENSMUSG00000105020.1) -695 ENSMUSG00000105020.1 ENSMUSG00000105020 ENSMUST00000196032 Gm7205 unprocessed_pseudogene Interval_82578 chr18 75265807 75266969 + 0 NA intron (ENSMUSG00000035765.10, intron 16 of 16) protein_coding-intron (ENSMUSG00000035765.10, intron 16 of 16) 30929 ENSMUSG00000102047.1 ENSMUSG00000102047 ENSMUST00000186356 2010010A06Rik transcribed_processed_pseudogene Interval_3397 chr1 57956057 57957277 + 0 NA TTS (ENSMUSG00000054770.16) protein_coding-TTS (ENSMUSG00000054770.16) 6314 ENSMUSG00000054770.16 ENSMUSG00000054770 ENSMUST00000160130 Kctd18 protein_coding Interval_23690 chr11 24619891 24620202 + 0 NA intron (ENSMUSG00000087085.1, intron 2 of 3) lincRNA-intron (ENSMUSG00000087085.1, intron 2 of 3) 59665 ENSMUSG00000080631.1 ENSMUSG00000080631 ENSMUST00000116981 Gm25507 miRNA Interval_146800 chr7 51839216 51839538 + 0 NA Intergenic Intergenic -10927 ENSMUSG00000108842.1 ENSMUSG00000108842 ENSMUST00000208279 Gm45001 TEC Interval_151392 chr7 122050859 122051983 + 0 NA intron (ENSMUSG00000030871.11, intron 3 of 6) protein_coding-intron (ENSMUSG00000030871.11, intron 3 of 8) 15590 ENSMUSG00000030871.11 ENSMUSG00000030871 ENSMUST00000033159 Ears2 protein_coding Interval_52998 chr14 53090960 53091836 + 0 NA promoter-TSS (ENSMUSG00000095736.1) TR_V_gene-promoter-TSS (ENSMUSG00000095736.1) 52 ENSMUSG00000095736.1 ENSMUSG00000095736 ENSMUST00000103609 Trav7n-4 TR_V_gene Interval_8670 chr1 146701977 146702171 + 0 NA intron (ENSMUSG00000035131.14, intron 4 of 7) protein_coding-intron (ENSMUSG00000035131.14, intron 4 of 7) -23507 ENSMUSG00000080078.2 ENSMUSG00000080078 ENSMUST00000116191 Gm15583 processed_pseudogene Interval_59333 chr15 51746403 51747072 + 0 NA Intergenic Intergenic 89520 ENSMUSG00000022312.11 ENSMUSG00000022312 ENSMUST00000228583 Eif3h protein_coding Interval_68341 chr16 73646023 73646223 + 0 NA Intergenic Intergenic -42071 ENSMUSG00000116642.1 ENSMUSG00000116642 ENSMUST00000231958 Gm18168 unprocessed_pseudogene Interval_157270 chr8 68842678 68843635 + 0 NA Intergenic Intergenic 14299 ENSMUSG00000031864.16 ENSMUSG00000031864 ENSMUST00000212064 Ints10 protein_coding Interval_110148 chr3 153742401 153743347 + 0 NA Intergenic Intergenic -6425 ENSMUSG00000106011.1 ENSMUSG00000106011 ENSMUST00000198828 Gm43833 processed_pseudogene Interval_152475 chr7 133228858 133229262 + 0 NA Intergenic Intergenic 100809 ENSMUSG00000109816.1 ENSMUSG00000109816 ENSMUST00000209850 4930483O08Rik lincRNA Interval_156730 chr8 57651626 57653616 + 0 NA promoter-TSS (ENSMUSG00000110419.1) bidirectional_promoter_lncRNA-promoter-TSS (ENSMUSG00000110419.1) -262 ENSMUSG00000110289.1 ENSMUSG00000110289 ENSMUST00000211700 4930412F12Rik TEC Interval_117501 chr4 124208240 124208990 + 0 NA Intergenic Intergenic 70562 ENSMUSG00000103541.1 ENSMUSG00000103541 ENSMUST00000193103 Gm37667 TEC Interval_109745 chr3 146499101 146500537 + 0 NA promoter-TSS (ENSMUSG00000028188.13) protein_coding-promoter-TSS (ENSMUSG00000028188.13) -290 ENSMUSG00000068523.12 ENSMUSG00000068523 ENSMUST00000119130 Gng5 protein_coding Interval_131184 chr5 135659691 135660168 + 0 NA intron (ENSMUSG00000105239.1, intron 2 of 3) lincRNA-intron (ENSMUSG00000105239.1, intron 2 of 3) 13058 ENSMUSG00000105239.1 ENSMUSG00000105239 ENSMUST00000198157 Gm43091 lincRNA Interval_31758 chr11 102682714 102684255 + 0 NA Intergenic Intergenic 14250 ENSMUSG00000020925.16 ENSMUSG00000020925 ENSMUST00000138147 Ccdc43 protein_coding Interval_123630 chr5 33983062 33984431 + 0 NA exon (ENSMUSG00000070858.12, exon 2 of 4) protein_coding-exon (ENSMUSG00000070858.12, exon 2 of 4) 309 ENSMUSG00000070858.12 ENSMUSG00000070858 ENSMUST00000114382 Gm1673 protein_coding Interval_129855 chr5 122763535 122764540 + 0 NA promoter-TSS (ENSMUSG00000029471.13) protein_coding-promoter-TSS (ENSMUSG00000029471.13) 15296 ENSMUSG00000029471.13 ENSMUSG00000029471 ENSMUST00000199599 Camkk2 protein_coding Interval_69275 chr16 91840864 91841102 + 0 NA intron (ENSMUSG00000022957.20, intron 1 of 2) protein_coding-intron (ENSMUSG00000022957.20, intron 18 of 28) -63080 ENSMUSG00000022957.20 ENSMUSG00000022957 ENSMUST00000137575 Itsn1 protein_coding Interval_58445 chr15 34566964 34569152 + 0 NA Intergenic Intergenic 14713 ENSMUSG00000038879.8 ENSMUSG00000038879 ENSMUST00000227126 Nipal2 protein_coding Interval_96180 chr2 120328122 120328556 + 0 NA intron (ENSMUSG00000027291.15, intron 12 of 17) protein_coding-intron (ENSMUSG00000027291.15, intron 12 of 24) -15962 ENSMUSG00000046971.7 ENSMUSG00000046971 ENSMUST00000054651 Pla2g4f protein_coding Interval_110373 chr3 157542503 157543418 + 0 NA exon (ENSMUSG00000028180.18, exon 7 of 9) protein_coding-exon (ENSMUSG00000028180.18, exon 7 of 9) -1319 ENSMUSG00000065431.1 ENSMUSG00000065431 ENSMUST00000083497 Mir186 miRNA Interval_35417 chr12 21462325 21463941 + 0 NA Intergenic Intergenic 45254 ENSMUSG00000097055.2 ENSMUSG00000097055 ENSMUST00000227598 Gm4419 antisense Interval_32766 chr11 110408628 110410333 + 0 NA intron (ENSMUSG00000020623.11, intron 1 of 11) protein_coding-intron (ENSMUSG00000020623.11, intron 1 of 11) -67897 ENSMUSG00000020623.11 ENSMUSG00000020623 ENSMUST00000133920 Map2k6 protein_coding Interval_162091 chr8 125032554 125033238 + 0 NA exon (ENSMUSG00000056820.7, exon 6 of 6) protein_coding-exon (ENSMUSG00000056820.7, exon 6 of 6) -13725 ENSMUSG00000110683.1 ENSMUSG00000110683 ENSMUST00000212423 Gm45874 processed_pseudogene Interval_4125 chr1 69729513 69729967 + 0 NA Intergenic Intergenic -41128 ENSMUSG00000103402.1 ENSMUSG00000103402 ENSMUST00000194308 Gm37930 TEC Interval_51193 chr14 24614547 24614743 + 0 NA TTS (ENSMUSG00000048628.5) lincRNA-TTS (ENSMUSG00000048628.5) 2822 ENSMUSG00000048628.5 ENSMUSG00000048628 ENSMUST00000062438 4930542C16Rik lincRNA Interval_19190 chr10 95386325 95387199 + 0 NA TTS (ENSMUSG00000020027.18) protein_coding-TTS (ENSMUSG00000020027.18) 28722 ENSMUSG00000020027.18 ENSMUSG00000020027 ENSMUST00000145847 Socs2 protein_coding Interval_48544 chr13 100001340 100002348 + 0 NA TTS (ENSMUSG00000021646.9) protein_coding-TTS (ENSMUSG00000021646.9) -26528 ENSMUSG00000021646.9 ENSMUSG00000021646 ENSMUST00000221846 Mccc2 protein_coding Interval_50507 chr14 14355432 14355719 + 0 NA TTS (ENSMUSG00000068758.8) protein_coding-TTS (ENSMUSG00000068758.8) -8311 ENSMUSG00000114883.1 ENSMUSG00000114883 ENSMUST00000224991 Gm48860 antisense Interval_125598 chr5 72443087 72444303 + 0 NA intron (ENSMUSG00000005220.10, intron 2 of 20) protein_coding-intron (ENSMUSG00000005220.10, intron 3 of 21) -24876 ENSMUSG00000095112.1 ENSMUSG00000095112 ENSMUST00000179713 Gm23712 snRNA Interval_109740 chr3 146468813 146469619 + 0 NA TTS (ENSMUSG00000028188.13) protein_coding-TTS (ENSMUSG00000028188.13) 523 ENSMUSG00000028188.13 ENSMUSG00000028188 ENSMUST00000093951 Spata1 protein_coding Interval_153487 chr7 145155853 145156192 + 0 NA Intergenic Intergenic -6974 ENSMUSG00000108967.1 ENSMUSG00000108967 ENSMUST00000207878 Gm45181 lincRNA Interval_84669 chr19 14873553 14874719 + 0 NA Intergenic Intergenic 86630 ENSMUSG00000063586.1 ENSMUSG00000063586 ENSMUST00000072982 Gm5513 processed_pseudogene Interval_125642 chr5 72983917 72984534 + 0 NA Intergenic Intergenic -9523 ENSMUSG00000063656.6 ENSMUSG00000063656 ENSMUST00000043711 Gm10135 protein_coding Interval_104289 chr3 62895629 62895951 + 0 NA Intergenic Intergenic 28443 ENSMUSG00000063001.10 ENSMUSG00000063001 ENSMUST00000077976 Gm9701 processed_pseudogene Interval_106563 chr3 97263270 97263554 + 0 NA exon (ENSMUSG00000106536.1, exon 1 of 1) TEC-exon (ENSMUSG00000106536.1, exon 1 of 1) 1057 ENSMUSG00000106536.1 ENSMUSG00000106536 ENSMUST00000199972 Gm42508 TEC Interval_33907 chr11 119342701 119342994 + 0 NA TTS (ENSMUSG00000005043.13) protein_coding-TTS (ENSMUSG00000005043.13) 9852 ENSMUSG00000005043.13 ENSMUSG00000005043 ENSMUST00000141540 Sgsh protein_coding Interval_23470 chr11 22811640 22811868 + 0 NA intron (ENSMUSG00000051650.11, intron 1 of 5) protein_coding-intron (ENSMUSG00000051650.11, intron 1 of 5) -24507 ENSMUSG00000082576.1 ENSMUSG00000082576 ENSMUST00000118614 Gm12058 processed_pseudogene Interval_154064 chr8 12428356 12429290 + 0 NA intron (ENSMUSG00000047935.17, intron 4 of 6) sense_overlapping-intron (ENSMUSG00000047935.17, intron 4 of 8) 32420 ENSMUSG00000092656.1 ENSMUSG00000092656 ENSMUST00000174915 Gm25239 miRNA Interval_38206 chr12 76359187 76359671 + 0 NA intron (ENSMUSG00000056459.14, intron 1 of 2) protein_coding-intron (ENSMUSG00000056459.14, intron 1 of 2) 10035 ENSMUSG00000056459.14 ENSMUSG00000056459 ENSMUST00000176967 Zbtb25 protein_coding Interval_48222 chr13 97274837 97277043 + 0 NA Intergenic Intergenic -7243 ENSMUSG00000097932.2 ENSMUSG00000097932 ENSMUST00000181148 C430039J16Rik lincRNA Interval_16828 chr10 68794877 68796343 + 0 NA Intergenic Intergenic 71964 ENSMUSG00000060044.8 ENSMUSG00000060044 ENSMUST00000218918 Tmem26 protein_coding Interval_166868 chr9 63462244 63462961 + 0 NA intron (ENSMUSG00000086539.8, intron 2 of 4) protein_coding-intron (ENSMUSG00000037801.13, intron 17 of 21) -18527 ENSMUSG00000091866.1 ENSMUSG00000091866 ENSMUST00000163864 Gm6257 processed_pseudogene Interval_145312 chr7 32270262 32271029 + 0 NA Intergenic Intergenic 47805 ENSMUSG00000101638.1 ENSMUSG00000101638 ENSMUST00000186031 Scgb1b11 protein_coding Interval_28515 chr11 76441366 76442383 + 0 NA intron (ENSMUSG00000017631.19, intron 16 of 22) protein_coding-intron (ENSMUSG00000017631.19, intron 11 of 17) 34669 ENSMUSG00000020843.15 ENSMUSG00000020843 ENSMUST00000164102 Timm22 protein_coding Interval_38315 chr12 77080333 77080545 + 0 NA Intergenic Intergenic 35993 ENSMUSG00000093114.1 ENSMUSG00000093114 ENSMUST00000175373 Gm22696 miRNA Interval_66469 chr16 34069256 34070201 + 0 NA intron (ENSMUSG00000061751.16, intron 33 of 48) protein_coding-intron (ENSMUSG00000061751.16, intron 34 of 59) 26300 ENSMUSG00000061751.16 ENSMUSG00000061751 ENSMUST00000132569 Kalrn protein_coding Interval_141885 chr6 135136499 135137370 + 0 NA TTS (ENSMUSG00000042770.8) protein_coding-TTS (ENSMUSG00000042770.8) -2482 ENSMUSG00000108191.1 ENSMUSG00000108191 ENSMUST00000205069 Gm29803 processed_pseudogene Interval_81319 chr18 57960949 57961422 + 0 NA Intergenic Intergenic 33980 ENSMUSG00000024597.11 ENSMUSG00000024597 ENSMUST00000236673 Slc12a2 protein_coding Interval_19735 chr10 108373605 108374032 + 0 NA intron (ENSMUSG00000035873.8, intron 1 of 4) protein_coding-intron (ENSMUSG00000035873.8, intron 2 of 6) 10153 ENSMUSG00000065653.1 ENSMUSG00000065653 ENSMUST00000083719 Gm23105 snoRNA Interval_113686 chr4 57614135 57614521 + 0 NA intron (ENSMUSG00000090053.9, intron 1 of 6) protein_coding-intron (ENSMUSG00000089945.13, intron 1 of 10) -23495 ENSMUSG00000089945.13 ENSMUSG00000089945 ENSMUST00000150412 Pakap protein_coding Interval_92263 chr2 57505557 57506108 + 0 NA Intergenic Intergenic -80123 ENSMUSG00000084338.5 ENSMUSG00000084338 ENSMUST00000121893 Gm13531 processed_pseudogene Interval_127432 chr5 103891162 103892589 + 0 NA intron (ENSMUSG00000029312.12, intron 1 of 9) protein_coding-intron (ENSMUSG00000029312.12, intron 1 of 9) -7004 ENSMUSG00000095133.1 ENSMUSG00000095133 ENSMUST00000179033 Gm24897 snRNA Interval_140718 chr6 120829452 120830415 + 0 NA Intergenic Intergenic -6279 ENSMUSG00000009112.4 ENSMUSG00000009112 ENSMUST00000009256 Bcl2l13 protein_coding Interval_123598 chr5 33694737 33696076 + 0 NA Intergenic Intergenic -12432 ENSMUSG00000106971.1 ENSMUSG00000106971 ENSMUST00000201254 Gm42965 processed_pseudogene Interval_53995 chr14 64183095 64183498 + 0 NA intron (ENSMUSG00000054733.9, intron 5 of 5) protein_coding-intron (ENSMUSG00000054733.9, intron 10 of 10) 66982 ENSMUSG00000114284.1 ENSMUSG00000114284 ENSMUST00000225122 9630015K15Rik antisense Interval_85392 chr19 25451023 25451846 + 0 NA Intergenic Intergenic 2629 ENSMUSG00000064843.1 ENSMUSG00000064843 ENSMUST00000082909 Gm26207 snRNA Interval_141065 chr6 124768006 124769926 + 0 NA promoter-TSS (ENSMUSG00000004267.16) protein_coding-promoter-TSS (ENSMUSG00000004267.16) 554 ENSMUSG00000004267.16 ENSMUSG00000004267 ENSMUST00000156033 Eno2 protein_coding Interval_46154 chr13 62059366 62060835 + 0 NA intron (ENSMUSG00000114036.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000114036.1, intron 1 of 1) 24678 ENSMUSG00000074868.2 ENSMUSG00000074868 ENSMUST00000099450 Gm6478 processed_pseudogene Interval_2778 chr1 44721097 44721307 + 0 NA intron (ENSMUSG00000056870.9, intron 2 of 11) protein_coding-intron (ENSMUSG00000056870.9, intron 3 of 10) 23747 ENSMUSG00000101701.1 ENSMUSG00000101701 ENSMUST00000186732 4930521E06Rik antisense Interval_150787 chr7 114573632 114574769 + 0 NA Intergenic Intergenic -11310 ENSMUSG00000030670.16 ENSMUSG00000030670 ENSMUST00000147428 Cyp2r1 protein_coding Interval_114578 chr4 82642946 82643857 + 0 NA TTS (ENSMUSG00000084357.1) processed_pseudogene-TTS (ENSMUSG00000084357.1) 1001 ENSMUSG00000084357.1 ENSMUSG00000084357 ENSMUST00000118347 Gm11268 processed_pseudogene Interval_142079 chr6 136991699 136992250 + 0 NA Intergenic Intergenic 5378 ENSMUSG00000107734.1 ENSMUSG00000107734 ENSMUST00000203175 Gm30055 TEC Interval_106893 chr3 101631922 101634400 + 0 NA Intergenic Intergenic -36031 ENSMUSG00000104693.1 ENSMUSG00000104693 ENSMUST00000200347 Gm42941 sense_intronic Interval_60619 chr15 75731235 75732339 + 0 NA Intergenic Intergenic 16441 ENSMUSG00000047591.5 ENSMUSG00000047591 ENSMUST00000062002 Mafa protein_coding Interval_7775 chr1 133613695 133615259 + 0 NA Intergenic Intergenic -4430 ENSMUSG00000090553.8 ENSMUSG00000090553 ENSMUST00000164574 Snrpe protein_coding Interval_160448 chr8 109565203 109566243 + 0 NA promoter-TSS (ENSMUSG00000031723.8) protein_coding-promoter-TSS (ENSMUSG00000031723.8) -3165 ENSMUSG00000031723.8 ENSMUSG00000031723 ENSMUST00000178445 Txnl4b protein_coding Interval_87747 chr19 55599472 55600405 + 0 NA intron (ENSMUSG00000024983.10, intron 8 of 8) protein_coding-intron (ENSMUSG00000024983.10, intron 7 of 7) -142326 ENSMUSG00000024985.20 ENSMUSG00000024985 ENSMUST00000148666 Tcf7l2 protein_coding Interval_174354 chrX 147507632 147508114 + 0 NA intron (ENSMUSG00000031290.14, intron 5 of 14) protein_coding-intron (ENSMUSG00000031290.14, intron 10 of 20) 4289 ENSMUSG00000031290.14 ENSMUSG00000031290 ENSMUST00000151730 Lrch2 protein_coding Interval_108681 chr3 130059793 130061384 + 0 NA exon (ENSMUSG00000001052.15, exon 1 of 24) protein_coding-exon (ENSMUSG00000001052.15, exon 1 of 24) -7824 ENSMUSG00000063328.6 ENSMUSG00000063328 ENSMUST00000076703 Gm9396 processed_pseudogene Interval_111557 chr4 23193445 23195195 + 0 NA Intergenic Intergenic -66464 ENSMUSG00000087098.1 ENSMUSG00000087098 ENSMUST00000131639 Gm11884 lincRNA Interval_150636 chr7 112993737 112994266 + 0 NA intron (ENSMUSG00000110207.1, intron 2 of 3) lincRNA-intron (ENSMUSG00000110207.1, intron 2 of 3) 10098 ENSMUSG00000110207.1 ENSMUSG00000110207 ENSMUST00000210768 Gm33586 lincRNA Interval_59316 chr15 51591707 51593070 + 0 NA Intergenic Intergenic 37247 ENSMUSG00000115563.1 ENSMUSG00000115563 ENSMUST00000227000 Gm34562 lincRNA Interval_85880 chr19 32688020 32688544 + 0 NA intron (ENSMUSG00000013662.6, intron 6 of 8) protein_coding-intron (ENSMUSG00000013662.6, intron 6 of 9) 6588 ENSMUSG00000013662.6 ENSMUSG00000013662 ENSMUST00000237933 Atad1 protein_coding Interval_54281 chr14 67117070 67117487 + 0 NA Intergenic Intergenic 42448 ENSMUSG00000098365.1 ENSMUSG00000098365 ENSMUST00000184709 Gm27647 miRNA Interval_60841 chr15 77089258 77090016 + 0 NA promoter-TSS (ENSMUSG00000033565.18) protein_coding-promoter-TSS (ENSMUSG00000033565.18) 63 ENSMUSG00000033565.18 ENSMUSG00000033565 ENSMUST00000226877 Rbfox2 protein_coding Interval_24404 chr11 33026991 33027804 + 0 NA Intergenic Intergenic 12306 ENSMUSG00000081076.3 ENSMUSG00000081076 ENSMUST00000121691 Rpsa-ps4 processed_pseudogene Interval_131351 chr5 136649686 136650421 + 0 NA Intergenic Intergenic -47726 ENSMUSG00000005474.9 ENSMUSG00000005474 ENSMUST00000197849 Myl10 protein_coding Interval_161844 chr8 123140614 123140831 + 0 NA exon (ENSMUSG00000000739.14, exon 7 of 7) protein_coding-exon (ENSMUSG00000000739.14, exon 7 of 7) 10616 ENSMUSG00000098582.1 ENSMUSG00000098582 ENSMUST00000184815 Mir7080 miRNA Interval_128372 chr5 112870568 112871448 + 0 NA intron (ENSMUSG00000072720.9, intron 2 of 16) protein_coding-intron (ENSMUSG00000072720.9, intron 7 of 43) 1488 ENSMUSG00000072720.9 ENSMUSG00000072720 ENSMUST00000183273 Myo18b protein_coding Interval_98254 chr2 150499769 150501064 + 0 NA exon (ENSMUSG00000083325.3, exon 1 of 1) transcribed_processed_pseudogene-exon (ENSMUSG00000083325.3, exon 1 of 1) 429 ENSMUSG00000083325.3 ENSMUSG00000083325 ENSMUST00000121441 Gm14121 transcribed_processed_pseudogene Interval_14107 chr10 27506947 27507244 + 0 NA intron (ENSMUSG00000019899.17, intron 1 of 1) protein_coding-intron (ENSMUSG00000019899.17, intron 1 of 64) 54806 ENSMUSG00000089050.1 ENSMUSG00000089050 ENSMUST00000158425 Gm23353 snoRNA Interval_114474 chr4 80517286 80518008 + 0 NA Intergenic Intergenic 77249 ENSMUSG00000082555.1 ENSMUSG00000082555 ENSMUST00000117418 Gm11406 processed_pseudogene Interval_55147 chr14 78663761 78664343 + 0 NA intron (ENSMUSG00000034731.11, intron 2 of 29) protein_coding-intron (ENSMUSG00000034731.11, intron 1 of 28) -34778 ENSMUSG00000034731.11 ENSMUSG00000034731 ENSMUST00000227820 Dgkh protein_coding Interval_68554 chr16 78614576 78615041 + 0 NA Intergenic Intergenic -9939 ENSMUSG00000093988.1 ENSMUSG00000093988 ENSMUST00000083459 Gm24861 snRNA Interval_87725 chr19 55443762 55445526 + 0 NA intron (ENSMUSG00000024983.10, intron 3 of 3) protein_coding-intron (ENSMUSG00000024983.10, intron 5 of 7) 128317 ENSMUSG00000024983.10 ENSMUSG00000024983 ENSMUST00000224396 Vti1a protein_coding Interval_63083 chr15 99002892 99003112 + 0 NA Intergenic Intergenic -3055 ENSMUSG00000064081.4 ENSMUSG00000064081 ENSMUST00000079818 Gm8973 processed_pseudogene Interval_117997 chr4 127640353 127640714 + 0 NA Intergenic Intergenic 165631 ENSMUSG00000087470.2 ENSMUSG00000087470 ENSMUST00000146587 A630031M04Rik lincRNA Interval_131020 chr5 134592938 134593191 + 0 NA exon (ENSMUSG00000023104.9, exon 1 of 3) protein_coding-exon (ENSMUSG00000023104.9, exon 1 of 3) 10856 ENSMUSG00000040751.12 ENSMUSG00000040751 ENSMUST00000201832 Lat2 protein_coding Interval_7864 chr1 134234417 134236065 + 0 NA promoter-TSS (ENSMUSG00000042429.8) protein_coding-promoter-TSS (ENSMUSG00000042429.8) 123 ENSMUSG00000042429.8 ENSMUSG00000042429 ENSMUST00000187631 Adora1 protein_coding Interval_135447 chr6 39396371 39397525 + 0 NA TTS (ENSMUSG00000029922.15) protein_coding-TTS (ENSMUSG00000029922.15) 7782 ENSMUSG00000029922.15 ENSMUSG00000029922 ENSMUST00000114822 Mkrn1 protein_coding Interval_52517 chr14 47253487 47254804 + 0 NA intron (ENSMUSG00000037572.17, intron 15 of 24) protein_coding-intron (ENSMUSG00000037572.17, intron 15 of 24) 8041 ENSMUSG00000115849.1 ENSMUSG00000115849 ENSMUST00000228742 Gm49149 TEC Interval_120926 chr4 151688548 151689096 + 0 NA intron (ENSMUSG00000014592.21, intron 2 of 7) protein_coding-intron (ENSMUSG00000014592.21, intron 3 of 23) 172882 ENSMUSG00000014592.21 ENSMUSG00000014592 ENSMUST00000135780 Camta1 protein_coding Interval_55596 chr14 94729578 94729832 + 0 NA intron (ENSMUSG00000115822.1, intron 2 of 2) lincRNA-intron (ENSMUSG00000115822.1, intron 2 of 2) 5760 ENSMUSG00000115822.1 ENSMUSG00000115822 ENSMUST00000227716 Gm33450 lincRNA Interval_137425 chr6 72185816 72186368 + 0 NA Intergenic Intergenic 23243 ENSMUSG00000108371.1 ENSMUSG00000108371 ENSMUST00000205674 Gm38832 lincRNA Interval_51167 chr14 24346862 24347438 + 0 NA Intergenic Intergenic -11209 ENSMUSG00000114913.1 ENSMUSG00000114913 ENSMUST00000223662 Gm18276 processed_pseudogene Interval_89109 chr2 16521173 16521536 + 0 NA intron (ENSMUSG00000026748.13, intron 2 of 12) protein_coding-intron (ENSMUSG00000026748.13, intron 2 of 13) -117342 ENSMUSG00000026748.13 ENSMUSG00000026748 ENSMUST00000126173 Plxdc2 protein_coding Interval_144510 chr7 25599448 25601866 + 0 NA promoter-TSS (ENSMUSG00000108304.1) processed_pseudogene-promoter-TSS (ENSMUSG00000108304.1) -669 ENSMUSG00000108304.1 ENSMUSG00000108304 ENSMUST00000206649 Gm4607 processed_pseudogene Interval_142575 chr6 143454864 143455356 + 0 NA Intergenic Intergenic 10287 ENSMUSG00000077241.1 ENSMUSG00000077241 ENSMUST00000104053 Gm23272 snoRNA Interval_162379 chr8 127583594 127583948 + 0 NA intron (ENSMUSG00000025812.18, intron 1 of 3) protein_coding-intron (ENSMUSG00000025812.18, intron 21 of 23) -13935 ENSMUSG00000088580.1 ENSMUSG00000088580 ENSMUST00000157955 Gm22968 rRNA Interval_30375 chr11 93967562 93968679 + 0 NA intron (ENSMUSG00000091228.1, intron 1 of 7) protein_coding-intron (ENSMUSG00000037601.11, intron 1 of 3) 173 ENSMUSG00000091228.1 ENSMUSG00000091228 ENSMUST00000170303 Gm20390 protein_coding Interval_102061 chr3 16260412 16261203 + 0 NA Intergenic Intergenic 77571 ENSMUSG00000047213.14 ENSMUSG00000047213 ENSMUST00000108346 Ythdf3 protein_coding Interval_98229 chr2 150200305 150200724 + 0 NA Intergenic Intergenic 10121 ENSMUSG00000079009.8 ENSMUSG00000079009 ENSMUST00000109929 Gm14139 protein_coding Interval_58978 chr15 41232446 41233138 + 0 NA Intergenic Intergenic 10366 ENSMUSG00000116178.1 ENSMUSG00000116178 ENSMUST00000229823 Gm49529 processed_pseudogene Interval_92822 chr2 65938756 65939602 + 0 NA intron (ENSMUSG00000044647.16, intron 1 of 4) protein_coding-intron (ENSMUSG00000044647.16, intron 2 of 5) 9042 ENSMUSG00000044647.16 ENSMUSG00000044647 ENSMUST00000112394 Csrnp3 protein_coding Interval_94010 chr2 80673173 80673628 + 0 NA Intergenic Intergenic 34136 ENSMUSG00000026999.14 ENSMUSG00000026999 ENSMUST00000127926 Nup35 protein_coding Interval_158112 chr8 78818879 78819346 + 0 NA intron (ENSMUSG00000031683.16, intron 1 of 3) protein_coding-intron (ENSMUSG00000031683.16, intron 1 of 3) -5898 ENSMUSG00000031683.16 ENSMUSG00000031683 ENSMUST00000146824 Lsm6 protein_coding Interval_25021 chr11 43225127 43225772 + 0 NA intron (ENSMUSG00000055415.8, intron 12 of 20) protein_coding-intron (ENSMUSG00000055415.8, intron 13 of 21) 6815 ENSMUSG00000086170.1 ENSMUSG00000086170 ENSMUST00000136288 Gm12144 antisense Interval_17443 chr10 76763705 76763999 + 0 NA intron (ENSMUSG00000001120.15, intron 5 of 6) protein_coding-intron (ENSMUSG00000001120.15, intron 14 of 15) 24570 ENSMUSG00000001120.15 ENSMUSG00000001120 ENSMUST00000165571 Pcbp3 protein_coding Interval_87768 chr19 55735641 55736468 + 0 NA Intergenic Intergenic -6210 ENSMUSG00000024985.20 ENSMUSG00000024985 ENSMUST00000148666 Tcf7l2 protein_coding Interval_64529 chr16 13109277 13110890 + 0 NA exon (ENSMUSG00000022545.13, exon 1 of 11) protein_coding-exon (ENSMUSG00000022545.13, exon 1 of 11) -22308 ENSMUSG00000022545.13 ENSMUSG00000022545 ENSMUST00000156393 Ercc4 protein_coding Interval_64287 chr16 10236670 10237405 + 0 NA promoter-TSS (ENSMUSG00000089563.1) snRNA-promoter-TSS (ENSMUSG00000089563.1) -881 ENSMUSG00000089563.1 ENSMUSG00000089563 ENSMUST00000158938 Gm24667 snRNA Interval_116983 chr4 118642718 118642890 + 0 NA Intergenic Intergenic -6742 ENSMUSG00000085292.1 ENSMUSG00000085292 ENSMUST00000134971 Gm12853 antisense Interval_107870 chr3 116450911 116451286 + 0 NA Intergenic Intergenic -2534 ENSMUSG00000089060.1 ENSMUSG00000089060 ENSMUST00000158435 Gm22361 snRNA Interval_112210 chr4 35781249 35781772 + 0 NA intron (ENSMUSG00000045083.14, intron 1 of 2) protein_coding-intron (ENSMUSG00000045083.14, intron 1 of 2) 63694 ENSMUSG00000045083.14 ENSMUSG00000045083 ENSMUST00000125128 Lingo2 protein_coding Interval_74802 chr17 56631705 56632406 + 0 NA intron (ENSMUSG00000040828.10, intron 2 of 3) protein_coding-intron (ENSMUSG00000040828.10, intron 2 of 21) -5180 ENSMUSG00000041168.10 ENSMUSG00000041168 ENSMUST00000047226 Lonp1 protein_coding Interval_88405 chr2 4863767 4865098 + 0 NA Intergenic Intergenic -19625 ENSMUSG00000026662.13 ENSMUSG00000026662 ENSMUST00000140045 Sephs1 protein_coding Interval_35016 chr12 16672386 16673424 + 0 NA TTS (ENSMUSG00000036523.16) protein_coding-TTS (ENSMUSG00000036523.16) 665 ENSMUSG00000114049.1 ENSMUSG00000114049 ENSMUST00000223113 Gm48140 antisense Interval_152392 chr7 132711770 132712469 + 0 NA TTS (ENSMUSG00000030956.15) protein_coding-TTS (ENSMUSG00000030956.15) -52235 ENSMUSG00000087348.1 ENSMUSG00000087348 ENSMUST00000132849 Gm15582 antisense Interval_10447 chr1 170933300 170933855 + 0 NA Intergenic Intergenic -2194 ENSMUSG00000104386.1 ENSMUSG00000104386 ENSMUST00000194254 Gm37030 processed_pseudogene Interval_167280 chr9 67012800 67013300 + 0 NA Intergenic Intergenic 19775 ENSMUSG00000032366.15 ENSMUSG00000032366 ENSMUST00000131279 Tpm1 protein_coding Interval_101251 chr2 179863295 179863502 + 0 NA intron (ENSMUSG00000000305.12, intron 7 of 15) protein_coding-intron (ENSMUSG00000000305.12, intron 7 of 15) 86235 ENSMUSG00000000305.12 ENSMUSG00000000305 ENSMUST00000098996 Cdh4 protein_coding Interval_123308 chr5 31290660 31291679 + 0 NA promoter-TSS (ENSMUSG00000038564.11) protein_coding-promoter-TSS (ENSMUSG00000038564.11) 4264 ENSMUSG00000038552.14 ENSMUSG00000038552 ENSMUST00000201417 Fndc4 protein_coding Interval_35727 chr12 28687321 28687636 + 0 NA Intergenic Intergenic 8153 ENSMUSG00000098579.1 ENSMUSG00000098579 ENSMUST00000184974 Mir6937 miRNA Interval_105927 chr3 90130724 90131243 + 0 NA intron (ENSMUSG00000027939.11, intron 8 of 39) protein_coding-intron (ENSMUSG00000027939.11, intron 8 of 39) 4216 ENSMUSG00000104649.1 ENSMUSG00000104649 ENSMUST00000198020 Gm43712 unprocessed_pseudogene Interval_157672 chr8 72207038 72207554 + 0 NA intron (ENSMUSG00000074240.5, intron 3 of 5) protein_coding-intron (ENSMUSG00000074240.5, intron 2 of 4) 5700 ENSMUSG00000074240.5 ENSMUSG00000074240 ENSMUST00000238973 Cib3 protein_coding Interval_22516 chr11 11377941 11378169 + 0 NA intron (ENSMUSG00000020193.3, intron 6 of 7) protein_coding-intron (ENSMUSG00000020193.3, intron 6 of 7) 49457 ENSMUSG00000064766.1 ENSMUSG00000064766 ENSMUST00000082832 Gm26458 snoRNA Interval_55051 chr14 77511158 77511493 + 0 NA intron (ENSMUSG00000022012.9, intron 6 of 6) protein_coding-intron (ENSMUSG00000022012.9, intron 7 of 18) -9885 ENSMUSG00000067973.11 ENSMUSG00000067973 ENSMUST00000163416 Gm6994 antisense Interval_172626 chrX 38514556 38514788 + 0 NA Intergenic Intergenic 38211 ENSMUSG00000087390.1 ENSMUSG00000087390 ENSMUST00000130251 Gm7598 lincRNA Interval_14024 chr10 25653303 25653875 + 0 NA intron (ENSMUSG00000101537.1, intron 3 of 3) antisense-intron (ENSMUSG00000101537.1, intron 3 of 3) -24715 ENSMUSG00000112101.1 ENSMUSG00000112101 ENSMUST00000219989 Gm47924 processed_pseudogene Interval_10945 chr1 177428081 177428685 + 0 NA TTS (ENSMUSG00000097892.2) antisense-TTS (ENSMUSG00000097892.2) 701 ENSMUSG00000097892.2 ENSMUSG00000097892 ENSMUST00000180591 Gm26801 antisense Interval_59046 chr15 42219628 42220089 + 0 NA Intergenic Intergenic 23074 ENSMUSG00000115988.1 ENSMUSG00000115988 ENSMUST00000230284 Gm49441 lincRNA Interval_17303 chr10 75708776 75709171 + 0 NA intron (ENSMUSG00000020196.10, intron 2 of 3) protein_coding-intron (ENSMUSG00000020196.10, intron 26 of 36) 23647 ENSMUSG00000020196.10 ENSMUSG00000020196 ENSMUST00000218480 Cabin1 protein_coding Interval_110933 chr4 10480735 10481456 + 0 NA intron (ENSMUSG00000086080.7, intron 3 of 3) lincRNA-intron (ENSMUSG00000086080.7, intron 3 of 3) 8267 ENSMUSG00000086455.1 ENSMUSG00000086455 ENSMUST00000139423 Gm11815 lincRNA Interval_92432 chr2 59685103 59685920 + 0 NA intron (ENSMUSG00000035168.16, intron 1 of 25) protein_coding-intron (ENSMUSG00000035168.16, intron 2 of 26) -120557 ENSMUSG00000035168.16 ENSMUSG00000035168 ENSMUST00000147650 Tanc1 protein_coding Interval_62113 chr15 86932697 86933125 + 0 NA Intergenic Intergenic -6196 ENSMUSG00000115866.1 ENSMUSG00000115866 ENSMUST00000229572 Gm49467 processed_pseudogene Interval_19263 chr10 95881936 95882279 + 0 NA Intergenic Intergenic -11308 ENSMUSG00000111992.1 ENSMUSG00000111992 ENSMUST00000218412 Gm47724 processed_pseudogene Interval_69419 chr16 93128984 93129346 + 0 NA Intergenic Intergenic 56410 ENSMUSG00000098983.1 ENSMUSG00000098983 ENSMUST00000184529 Gm28003 miRNA Interval_86257 chr19 38202891 38203342 + 0 NA intron (ENSMUSG00000054237.6, intron 9 of 13) protein_coding-intron (ENSMUSG00000054237.6, intron 9 of 13) 21022 ENSMUSG00000054237.6 ENSMUSG00000054237 ENSMUST00000238154 Fra10ac1 protein_coding Interval_40849 chr12 108835306 108836575 + 0 NA promoter-TSS (ENSMUSG00000021265.3) protein_coding-promoter-TSS (ENSMUSG00000021265.3) -120 ENSMUSG00000021265.3 ENSMUSG00000021265 ENSMUST00000139714 Slc25a29 protein_coding Interval_85997 chr19 34834432 34834795 + 0 NA intron (ENSMUSG00000033610.16, intron 1 of 5) protein_coding-intron (ENSMUSG00000033610.16, intron 2 of 6) -13840 ENSMUSG00000065594.1 ENSMUSG00000065594 ENSMUST00000083660 Mir107 miRNA Interval_2479 chr1 39656727 39657267 + 0 NA exon (ENSMUSG00000097083.1, exon 2 of 2) antisense-exon (ENSMUSG00000097083.1, exon 2 of 2) -5523 ENSMUSG00000050967.5 ENSMUSG00000050967 ENSMUST00000053355 Creg2 protein_coding Interval_2066 chr1 36214218 36214460 + 0 NA intron (ENSMUSG00000037470.14, intron 6 of 18) protein_coding-intron (ENSMUSG00000037470.14, intron 6 of 40) 30381 ENSMUSG00000037470.14 ENSMUSG00000037470 ENSMUST00000192159 Uggt1 protein_coding Interval_165115 chr9 44642519 44642772 + 0 NA Intergenic Intergenic -8276 ENSMUSG00000111060.1 ENSMUSG00000111060 ENSMUST00000214694 Gm47238 unprocessed_pseudogene Interval_97131 chr2 131520729 131521172 + 0 NA promoter-TSS (ENSMUSG00000027333.18) protein_coding-promoter-TSS (ENSMUSG00000027333.18) 29007 ENSMUSG00000027333.18 ENSMUSG00000027333 ENSMUST00000151143 Smox protein_coding Interval_10330 chr1 169459110 169459718 + 0 NA Intergenic Intergenic -5545 ENSMUSG00000058622.1 ENSMUSG00000058622 ENSMUST00000076828 Gm5265 processed_pseudogene Interval_74550 chr17 53273769 53273990 + 0 NA Intergenic Intergenic 27916 ENSMUSG00000117194.1 ENSMUSG00000117194 ENSMUST00000233695 Gm49913 processed_pseudogene Interval_66228 chr16 32455528 32456228 + 0 NA TTS (ENSMUSG00000005615.15) protein_coding-TTS (ENSMUSG00000005615.15) 271 ENSMUSG00000116714.1 ENSMUSG00000116714 ENSMUST00000232596 2210020O09Rik antisense Interval_115527 chr4 100187705 100188690 + 0 NA intron (ENSMUSG00000035305.5, intron 1 of 8) protein_coding-intron (ENSMUSG00000035305.5, intron 1 of 8) 68576 ENSMUSG00000086385.1 ENSMUSG00000086385 ENSMUST00000134206 Gm12701 sense_intronic Interval_54138 chr14 65624138 65628095 + 0 NA intron (ENSMUSG00000061356.13, intron 12 of 18) protein_coding-intron (ENSMUSG00000061356.13, intron 12 of 18) 27570 ENSMUSG00000061356.13 ENSMUSG00000061356 ENSMUST00000079469 Nuggc protein_coding Interval_113338 chr4 53564465 53564835 + 0 NA promoter-TSS (ENSMUSG00000084970.1) antisense-promoter-TSS (ENSMUSG00000084970.1) 47 ENSMUSG00000084970.1 ENSMUSG00000084970 ENSMUST00000138377 1700060J05Rik antisense Interval_82563 chr18 75183569 75184374 + 0 NA intron (ENSMUSG00000035765.10, intron 13 of 16) protein_coding-intron (ENSMUSG00000035765.10, intron 13 of 16) -1157 ENSMUSG00000094153.2 ENSMUSG00000094153 ENSMUST00000179328 Gm8807 processed_pseudogene Interval_167623 chr9 71227090 71228560 + 0 NA intron (ENSMUSG00000013584.5, intron 1 of 13) protein_coding-intron (ENSMUSG00000013584.5, intron 1 of 13) 12036 ENSMUSG00000013584.5 ENSMUSG00000013584 ENSMUST00000034723 Aldh1a2 protein_coding Interval_169973 chr9 103339405 103339793 + 0 NA intron (ENSMUSG00000032555.10, intron 5 of 5) protein_coding-intron (ENSMUSG00000032555.10, intron 20 of 27) -4337 ENSMUSG00000032555.10 ENSMUSG00000032555 ENSMUST00000185972 Topbp1 protein_coding Interval_99479 chr2 162237910 162238333 + 0 NA exon (ENSMUSG00000053141.16, exon 6 of 31) protein_coding-exon (ENSMUSG00000053141.16, exon 6 of 31) -152692 ENSMUSG00000084919.1 ENSMUSG00000084919 ENSMUST00000151688 Ptprtos antisense Interval_66412 chr16 33723944 33724395 + 0 NA intron (ENSMUSG00000075254.12, intron 5 of 16) protein_coding-intron (ENSMUSG00000075254.12, intron 5 of 16) 39799 ENSMUSG00000075254.12 ENSMUSG00000075254 ENSMUST00000146518 Heg1 protein_coding Interval_60881 chr15 77449895 77450383 + 0 NA intron (ENSMUSG00000086467.2, intron 3 of 3) processed_transcript-intron (ENSMUSG00000086467.2, intron 2 of 2) -3943 ENSMUSG00000068252.6 ENSMUSG00000068252 ENSMUST00000149824 Apol7b protein_coding Interval_72998 chr17 34064077 34065592 + 0 NA TTS (ENSMUSG00000024330.17) protein_coding-TTS (ENSMUSG00000024330.17) 11333 ENSMUSG00000092383.2 ENSMUSG00000092383 ENSMUST00000172731 H2-Pb unprocessed_pseudogene Interval_52277 chr14 43126062 43127051 + 0 NA Intergenic Intergenic -4085 ENSMUSG00000090389.2 ENSMUSG00000090389 ENSMUST00000169632 Cdv3-ps processed_pseudogene Interval_64343 chr16 10637690 10638906 + 0 NA intron (ENSMUSG00000068663.14, intron 16 of 22) protein_coding-intron (ENSMUSG00000068663.14, intron 16 of 20) 45241 ENSMUSG00000087384.1 ENSMUSG00000087384 ENSMUST00000126849 Gm15558 antisense Interval_96595 chr2 126053213 126053451 + 0 NA intron (ENSMUSG00000027208.14, intron 1 of 2) protein_coding-intron (ENSMUSG00000027208.14, intron 2 of 3) 18674 ENSMUSG00000027208.14 ENSMUSG00000027208 ENSMUST00000110442 Fgf7 protein_coding Interval_66761 chr16 37124355 37124551 + 0 NA intron (ENSMUSG00000022829.14, intron 25 of 27) protein_coding-intron (ENSMUSG00000022829.14, intron 23 of 25) 89311 ENSMUSG00000083420.1 ENSMUSG00000083420 ENSMUST00000119116 Gm15665 processed_pseudogene Interval_38640 chr12 80739186 80740264 + 0 NA Intergenic Intergenic 17993 ENSMUSG00000066438.6 ENSMUSG00000066438 ENSMUST00000153762 Plekhd1 protein_coding Interval_16746 chr10 67894087 67894346 + 0 NA intron (ENSMUSG00000037855.15, intron 2 of 3) protein_coding-intron (ENSMUSG00000037855.15, intron 3 of 4) 18219 ENSMUSG00000037855.15 ENSMUSG00000037855 ENSMUST00000138543 Zfp365 protein_coding Interval_58588 chr15 36419235 36420113 + 0 NA Intergenic Intergenic 17017 ENSMUSG00000115395.1 ENSMUSG00000115395 ENSMUST00000227487 Gm49224 lincRNA Interval_3376 chr1 57581455 57581658 + 0 NA Intergenic Intergenic -17505 ENSMUSG00000101151.1 ENSMUSG00000101151 ENSMUST00000186851 Gm17929 processed_pseudogene Interval_44081 chr13 40756139 40757314 + 0 NA Intergenic Intergenic -1732 ENSMUSG00000114640.1 ENSMUSG00000114640 ENSMUST00000224849 Gm48107 lincRNA Interval_129077 chr5 117281331 117282623 + 0 NA TTS (ENSMUSG00000032959.12) protein_coding-TTS (ENSMUSG00000032959.12) 5591 ENSMUSG00000032959.12 ENSMUSG00000032959 ENSMUST00000139913 Pebp1 protein_coding Interval_68340 chr16 73539730 73540503 + 0 NA Intergenic Intergenic 55259 ENSMUSG00000116806.1 ENSMUSG00000116806 ENSMUST00000231349 Gm49680 processed_pseudogene Interval_107369 chr3 106903305 106904397 + 0 NA Intergenic Intergenic -24490 ENSMUSG00000105102.1 ENSMUSG00000105102 ENSMUST00000197932 Gm35507 lincRNA Interval_21405 chr10 128393934 128394935 + 0 NA TTS (ENSMUSG00000014498.9) protein_coding-TTS (ENSMUSG00000014498.9) 1129 ENSMUSG00000090761.1 ENSMUSG00000090761 ENSMUST00000167226 Gm17201 antisense Interval_159416 chr8 94453185 94454206 + 0 NA intron (ENSMUSG00000074151.13, intron 2 of 2) protein_coding-intron (ENSMUSG00000074151.13, intron 2 of 52) 19339 ENSMUSG00000074151.13 ENSMUSG00000074151 ENSMUST00000137032 Nlrc5 protein_coding Interval_22361 chr11 9122170 9122607 + 0 NA intron (ENSMUSG00000020407.13, intron 2 of 5) protein_coding-intron (ENSMUSG00000020407.13, intron 2 of 8) 3601 ENSMUSG00000020407.13 ENSMUSG00000020407 ENSMUST00000146696 Upp1 protein_coding Interval_91889 chr2 51041493 51041742 + 0 NA Intergenic Intergenic 107493 ENSMUSG00000017144.8 ENSMUSG00000017144 ENSMUST00000140864 Rnd3 protein_coding Interval_78292 chr18 11746076 11746556 + 0 NA Intergenic Intergenic 6239 ENSMUSG00000117589.1 ENSMUSG00000117589 ENSMUST00000234203 Gm18713 processed_pseudogene Interval_95256 chr2 105274262 105274732 + 0 NA intron (ENSMUSG00000055312.2, intron 1 of 2) protein_coding-intron (ENSMUSG00000055312.2, intron 1 of 3) 50155 ENSMUSG00000055312.2 ENSMUSG00000055312 ENSMUST00000131060 Them7 protein_coding Interval_154861 chr8 24465028 24465259 + 0 NA Intergenic Intergenic 18046 ENSMUSG00000108820.1 ENSMUSG00000108820 ENSMUST00000209183 Gm44620 TEC Interval_158083 chr8 78613106 78613307 + 0 NA intron (ENSMUSG00000031684.11, intron 1 of 2) protein_coding-intron (ENSMUSG00000031684.11, intron 5 of 11) 8912 ENSMUSG00000110244.1 ENSMUSG00000110244 ENSMUST00000211775 Gm2253 processed_pseudogene Interval_47438 chr13 84246310 84246531 + 0 NA intron (ENSMUSG00000035762.11, intron 1 of 1) protein_coding-intron (ENSMUSG00000035762.11, intron 1 of 11) -4851 ENSMUSG00000035762.11 ENSMUSG00000035762 ENSMUST00000225708 Tmem161b protein_coding Interval_19366 chr10 98045686 98046304 + 0 NA Intergenic Intergenic -78905 ENSMUSG00000074776.4 ENSMUSG00000074776 ENSMUST00000099324 Gm10754 lincRNA Interval_20876 chr10 121687537 121687812 + 0 NA intron (ENSMUSG00000047642.15, intron 12 of 13) protein_coding-intron (ENSMUSG00000047642.15, intron 11 of 12) 17361 ENSMUSG00000112526.1 ENSMUSG00000112526 ENSMUST00000220180 Gm35865 lincRNA Interval_58103 chr15 27923440 27924166 + 0 NA intron (ENSMUSG00000022263.10, intron 1 of 56) protein_coding-intron (ENSMUSG00000022263.10, intron 1 of 56) -56572 ENSMUSG00000115161.1 ENSMUSG00000115161 ENSMUST00000228406 Gm20555 TEC Interval_173252 chrX 75302847 75303947 + 0 NA intron (ENSMUSG00000031196.13, intron 12 of 25) protein_coding-intron (ENSMUSG00000031196.13, intron 12 of 25) -30459 ENSMUSG00000081633.1 ENSMUSG00000081633 ENSMUST00000118416 Gm8522 processed_pseudogene Interval_174289 chrX 143654716 143655363 + 0 NA intron (ENSMUSG00000031284.16, intron 2 of 12) protein_coding-intron (ENSMUSG00000031284.16, intron 1 of 15) -38247 ENSMUSG00000031284.16 ENSMUSG00000031284 ENSMUST00000172330 Pak3 protein_coding Interval_101372 chr2 180854568 180855522 + 0 NA intron (ENSMUSG00000086166.1, intron 1 of 3) lincRNA-intron (ENSMUSG00000086166.1, intron 1 of 3) 7393 ENSMUSG00000085728.1 ENSMUSG00000085728 ENSMUST00000146224 Gm14339 lincRNA Interval_150959 chr7 116728260 116729081 + 0 NA Intergenic Intergenic -37185 ENSMUSG00000088234.1 ENSMUSG00000088234 ENSMUST00000157609 Gm25423 snRNA Interval_123829 chr5 35795276 35796194 + 0 NA intron (ENSMUSG00000029095.17, intron 1 of 21) protein_coding-intron (ENSMUSG00000029095.17, intron 1 of 19) -55748 ENSMUSG00000036553.16 ENSMUSG00000036553 ENSMUST00000154118 Sh3tc1 protein_coding Interval_80163 chr18 37954584 37956565 + 0 NA promoter-TSS (ENSMUSG00000024454.16) protein_coding-promoter-TSS (ENSMUSG00000024454.16) -240 ENSMUSG00000044024.16 ENSMUSG00000044024 ENSMUST00000236289 Rell2 protein_coding Interval_101444 chr2 181463164 181463437 + 0 NA Intergenic Intergenic -29906 ENSMUSG00000055882.8 ENSMUSG00000055882 ENSMUST00000069649 Abhd16b protein_coding Interval_143793 chr7 16337800 16338434 + 0 NA intron (ENSMUSG00000052833.9, intron 6 of 8) protein_coding-intron (ENSMUSG00000052833.9, intron 6 of 8) 29724 ENSMUSG00000002083.13 ENSMUSG00000002083 ENSMUST00000147267 Bbc3 protein_coding Interval_45632 chr13 56370475 56373187 + 0 NA Intergenic Intergenic 8931 ENSMUSG00000074885.4 ENSMUSG00000074885 ENSMUST00000099476 Gm10782 lincRNA Interval_9719 chr1 161254388 161254884 + 0 NA Intergenic Intergenic -3474 ENSMUSG00000026701.15 ENSMUSG00000026701 ENSMUST00000130867 Prdx6 protein_coding Interval_46380 chr13 64355500 64355714 + 0 NA Intergenic Intergenic -5445 ENSMUSG00000113683.1 ENSMUSG00000113683 ENSMUST00000221233 Gm47123 antisense Interval_124970 chr5 62765595 62766825 + 0 NA promoter-TSS (ENSMUSG00000037999.13) protein_coding-promoter-TSS (ENSMUSG00000037999.13) -45464 ENSMUSG00000090326.2 ENSMUSG00000090326 ENSMUST00000170704 Dthd1 protein_coding Interval_68288 chr16 72614690 72615609 + 0 NA intron (ENSMUSG00000022883.11, intron 1 of 28) protein_coding-intron (ENSMUSG00000022883.11, intron 1 of 1) -242708 ENSMUSG00000116910.1 ENSMUSG00000116910 ENSMUST00000232381 Gm49670 processed_pseudogene Interval_174106 chrX 135008726 135009666 + 0 NA promoter-TSS (ENSMUSG00000052676.16) protein_coding-promoter-TSS (ENSMUSG00000052676.16) 27406 ENSMUSG00000089759.7 ENSMUSG00000089759 ENSMUST00000155136 3632454L22Rik processed_transcript Interval_138043 chr6 84565668 84566648 + 0 NA Intergenic Intergenic 21522 ENSMUSG00000063415.12 ENSMUSG00000063415 ENSMUST00000204109 Cyp26b1 protein_coding Interval_140012 chr6 113406123 113407267 + 0 NA intron (ENSMUSG00000030276.19, intron 6 of 7) protein_coding-intron (ENSMUSG00000030276.19, intron 9 of 12) 9757 ENSMUSG00000051169.14 ENSMUSG00000051169 ENSMUST00000150452 Rpusd3 protein_coding Interval_49413 chr13 111802005 111802402 + 0 NA intron (ENSMUSG00000021754.17, intron 1 of 19) protein_coding-intron (ENSMUSG00000021754.17, intron 1 of 19) -8265 ENSMUSG00000085204.1 ENSMUSG00000085204 ENSMUST00000153958 Gm15327 processed_transcript Interval_58412 chr15 34292591 34293225 + 0 NA Intergenic Intergenic -4038 ENSMUSG00000084738.2 ENSMUSG00000084738 ENSMUST00000122789 Gm25809 snoRNA Interval_132926 chr5 148779977 148780210 + 0 NA intron (ENSMUSG00000085740.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000085740.1, intron 1 of 2) 2130 ENSMUSG00000085740.1 ENSMUSG00000085740 ENSMUST00000155504 4930505K14Rik lincRNA Interval_552 chr1 7271225 7272289 + 0 NA Intergenic Intergenic 5954 ENSMUSG00000077244.1 ENSMUSG00000077244 ENSMUST00000104056 Gm23274 snoRNA Interval_119925 chr4 140967505 140968091 + 0 NA intron (ENSMUSG00000009863.14, intron 2 of 5) protein_coding-intron (ENSMUSG00000009863.14, intron 2 of 7) 6397 ENSMUSG00000009863.14 ENSMUSG00000009863 ENSMUST00000125780 Sdhb protein_coding Interval_156348 chr8 47599709 47599909 + 0 NA Intergenic Intergenic 8141 ENSMUSG00000098402.1 ENSMUSG00000098402 ENSMUST00000184727 Gm27409 miRNA Interval_17261 chr10 75406035 75407461 + 0 NA promoter-TSS (ENSMUSG00000033427.14) protein_coding-promoter-TSS (ENSMUSG00000033427.14) 5633 ENSMUSG00000033427.14 ENSMUSG00000033427 ENSMUST00000129946 Upb1 protein_coding Interval_35794 chr12 29894532 29895282 + 0 NA promoter-TSS (ENSMUSG00000061911.15) protein_coding-promoter-TSS (ENSMUSG00000061911.15) -42701 ENSMUSG00000020674.17 ENSMUSG00000020674 ENSMUST00000218620 Pxdn protein_coding Interval_27705 chr11 69567021 69567523 + 0 NA intron (ENSMUSG00000041346.11, intron 3 of 9) protein_coding-intron (ENSMUSG00000041346.11, intron 3 of 9) -3350 ENSMUSG00000041346.11 ENSMUSG00000041346 ENSMUST00000132548 Wrap53 protein_coding Interval_151529 chr7 123311492 123312889 + 0 NA intron (ENSMUSG00000030766.15, intron 8 of 19) protein_coding-intron (ENSMUSG00000030766.15, intron 9 of 18) 47001 ENSMUSG00000030769.15 ENSMUSG00000030769 ENSMUST00000206180 Slc5a11 protein_coding Interval_165375 chr9 46889876 46890563 + 0 NA Intergenic Intergenic -23274 ENSMUSG00000099696.6 ENSMUSG00000099696 ENSMUST00000189828 2900052N01Rik lincRNA Interval_53369 chr14 56703604 56703920 + 0 NA Intergenic Intergenic -4401 ENSMUSG00000097743.1 ENSMUSG00000097743 ENSMUST00000180682 Gm16973 lincRNA Interval_124603 chr5 52240714 52241208 + 0 NA exon (ENSMUSG00000105328.1, exon 1 of 1) TEC-exon (ENSMUSG00000105328.1, exon 1 of 1) 1625 ENSMUSG00000105328.1 ENSMUSG00000105328 ENSMUST00000197541 Gm43180 TEC Interval_166845 chr9 63161462 63162067 + 0 NA Intergenic Intergenic -14753 ENSMUSG00000022245.15 ENSMUSG00000022245 ENSMUST00000055281 Skor1 protein_coding Interval_146687 chr7 49438748 49439490 + 0 NA intron (ENSMUSG00000052512.17, intron 6 of 38) protein_coding-intron (ENSMUSG00000052512.17, intron 5 of 5) -30593 ENSMUSG00000102148.1 ENSMUSG00000102148 ENSMUST00000193746 Gm38059 TEC Interval_37481 chr12 69253563 69254870 + 0 NA intron (ENSMUSG00000051890.13, intron 5 of 13) protein_coding-intron (ENSMUSG00000051890.13, intron 5 of 12) 12298 ENSMUSG00000051890.13 ENSMUSG00000051890 ENSMUST00000173419 Klhdc1 protein_coding Interval_171711 chr9 120403830 120404188 + 0 NA intron (ENSMUSG00000041794.13, intron 2 of 8) protein_coding-intron (ENSMUSG00000041794.13, intron 3 of 16) 17700 ENSMUSG00000041794.13 ENSMUSG00000041794 ENSMUST00000129168 Myrip protein_coding Interval_167875 chr9 73217390 73217648 + 0 NA intron (ENSMUSG00000098875.1, intron 3 of 3) lincRNA-intron (ENSMUSG00000098875.1, intron 3 of 3) 25036 ENSMUSG00000098875.1 ENSMUSG00000098875 ENSMUST00000183507 Gm27211 lincRNA Interval_80662 chr18 45862143 45864021 + 0 NA intron (ENSMUSG00000098284.8, intron 2 of 3) antisense-intron (ENSMUSG00000098284.8, intron 1 of 3) -5710 ENSMUSG00000098284.8 ENSMUSG00000098284 ENSMUST00000238177 A330093E20Rik antisense Interval_137973 chr6 83866749 83868195 + 0 NA intron (ENSMUSG00000030016.14, intron 1 of 3) protein_coding-intron (ENSMUSG00000030016.14, intron 1 of 3) -2593 ENSMUSG00000108750.1 ENSMUSG00000108750 ENSMUST00000206185 Gm44750 TEC Interval_62411 chr15 92184839 92185610 + 0 NA intron (ENSMUSG00000055022.14, intron 1 of 23) protein_coding-intron (ENSMUSG00000055022.14, intron 1 of 23) 134059 ENSMUSG00000055022.14 ENSMUSG00000055022 ENSMUST00000068378 Cntn1 protein_coding Interval_168757 chr9 86724877 86726255 + 0 NA Intergenic Intergenic 13562 ENSMUSG00000104120.1 ENSMUSG00000104120 ENSMUST00000195378 Gm37484 TEC Interval_148134 chr7 79418237 79418984 + 0 NA intron (ENSMUSG00000039187.16, intron 2 of 5) protein_coding-intron (ENSMUSG00000039187.16, intron 2 of 5) -6093 ENSMUSG00000082400.1 ENSMUSG00000082400 ENSMUST00000119834 Gm16017 processed_pseudogene Interval_28900 chr11 79151670 79153275 + 0 NA Intergenic Intergenic -60324 ENSMUSG00000081000.1 ENSMUSG00000081000 ENSMUST00000121698 Gm11200 processed_pseudogene Interval_167774 chr9 72661660 72663415 + 0 NA promoter-TSS (ENSMUSG00000032216.15) protein_coding-promoter-TSS (ENSMUSG00000032216.15) 191 ENSMUSG00000032216.15 ENSMUSG00000032216 ENSMUST00000184287 Nedd4 protein_coding Interval_113501 chr4 55384343 55384939 + 0 NA intron (ENSMUSG00000028426.10, intron 8 of 9) protein_coding-intron (ENSMUSG00000028426.10, intron 8 of 9) 8060 ENSMUSG00000084144.1 ENSMUSG00000084144 ENSMUST00000120819 Gm12516 processed_pseudogene Interval_65452 chr16 22405888 22406648 + 0 NA intron (ENSMUSG00000013089.15, intron 3 of 3) protein_coding-intron (ENSMUSG00000013089.15, intron 7 of 12) -4439 ENSMUSG00000013089.15 ENSMUSG00000013089 ENSMUST00000170393 Etv5 protein_coding Interval_103331 chr3 38884455 38888399 + 0 NA promoter-TSS (ENSMUSG00000046743.6) protein_coding-promoter-TSS (ENSMUSG00000046743.6) 1832 ENSMUSG00000086181.1 ENSMUSG00000086181 ENSMUST00000153659 C230034O21Rik antisense Interval_167632 chr9 71399939 71400377 + 0 NA Intergenic Intergenic 85747 ENSMUSG00000032199.13 ENSMUSG00000032199 ENSMUST00000233263 Polr2m protein_coding Interval_67153 chr16 43951551 43951928 + 0 NA intron (ENSMUSG00000022701.18, intron 12 of 15) protein_coding-intron (ENSMUSG00000022701.18, intron 6 of 9) 27423 ENSMUSG00000036304.14 ENSMUSG00000036304 ENSMUST00000165648 Zdhhc23 protein_coding Interval_141284 chr6 126848625 126849686 + 0 NA promoter-TSS (ENSMUSG00000000399.10) protein_coding-promoter-TSS (ENSMUSG00000000399.10) -30 ENSMUSG00000000399.10 ENSMUSG00000000399 ENSMUST00000200890 Ndufa9 protein_coding Interval_172139 chrX 7922122 7923294 + 0 NA intron (ENSMUSG00000039278.10, intron 2 of 2) protein_coding-intron (ENSMUSG00000039278.10, intron 2 of 2) 2886 ENSMUSG00000039278.10 ENSMUSG00000039278 ENSMUST00000041096 Pcsk1n protein_coding Interval_33263 chr11 115535464 115537099 + 0 NA promoter-TSS (ENSMUSG00000020738.16) protein_coding-promoter-TSS (ENSMUSG00000020738.16) -5 ENSMUSG00000020738.16 ENSMUSG00000020738 ENSMUST00000050672 Sumo2 protein_coding Interval_68199 chr16 67776252 67776896 + 0 NA Intergenic Intergenic -35457 ENSMUSG00000116575.1 ENSMUSG00000116575 ENSMUST00000231772 Gm49648 lincRNA Interval_34342 chr12 3510406 3510709 + 0 NA Intergenic Intergenic 12711 ENSMUSG00000112105.1 ENSMUSG00000112105 ENSMUST00000219719 Rps7-ps2 processed_pseudogene Interval_55001 chr14 76791778 76792642 + 0 NA Intergenic Intergenic 11383 ENSMUSG00000115817.1 ENSMUSG00000115817 ENSMUST00000226490 Gm30246 lincRNA Interval_136517 chr6 55101409 55101746 + 0 NA intron (ENSMUSG00000003476.16, intron 5 of 11) protein_coding-intron (ENSMUSG00000003476.16, intron 6 of 12) 16336 ENSMUSG00000003476.16 ENSMUSG00000003476 ENSMUST00000169777 Crhr2 protein_coding Interval_12787 chr10 5388491 5388706 + 0 NA intron (ENSMUSG00000096054.3, intron 13 of 145) protein_coding-intron (ENSMUSG00000096054.3, intron 13 of 31) 31425 ENSMUSG00000094906.1 ENSMUSG00000094906 ENSMUST00000104408 Gm23573 snRNA Interval_129357 chr5 119472502 119472813 + 0 NA Intergenic Intergenic 55297 ENSMUSG00000106938.1 ENSMUSG00000106938 ENSMUST00000201435 Gm31314 lincRNA Interval_130713 chr5 129952743 129953030 + 0 NA intron (ENSMUSG00000066735.8, intron 1 of 1) protein_coding-intron (ENSMUSG00000066735.8, intron 1 of 2) 7306 ENSMUSG00000107118.1 ENSMUSG00000107118 ENSMUST00000201618 Gm42986 TEC Interval_115719 chr4 102986308 102987485 + 0 NA intron (ENSMUSG00000028523.14, intron 1 of 3) protein_coding-intron (ENSMUSG00000028523.14, intron 1 of 4) 2859 ENSMUSG00000085181.1 ENSMUSG00000085181 ENSMUST00000149348 Gm12709 antisense Interval_171376 chr9 117167265 117167789 + 0 NA intron (ENSMUSG00000039607.17, intron 1 of 13) protein_coding-intron (ENSMUSG00000039607.17, intron 1 of 12) -85009 ENSMUSG00000079669.2 ENSMUSG00000079669 ENSMUST00000172075 Gm17396 processed_transcript Interval_170479 chr9 108234237 108235367 + 0 NA intron (ENSMUSG00000039952.15, intron 1 of 2) protein_coding-intron (ENSMUSG00000039952.15, intron 2 of 3) 28949 ENSMUSG00000039952.15 ENSMUSG00000039952 ENSMUST00000193701 Dag1 protein_coding Interval_49656 chr13 113829129 113829302 + 0 NA intron (ENSMUSG00000042348.10, intron 1 of 3) protein_coding-intron (ENSMUSG00000042348.10, intron 1 of 4) 34622 ENSMUSG00000042348.10 ENSMUSG00000042348 ENSMUST00000224068 Arl15 protein_coding Interval_157920 chr8 75955800 75956010 + 0 NA intron (ENSMUSG00000031620.16, intron 13 of 13) protein_coding-intron (ENSMUSG00000031620.16, intron 12 of 12) -54121 ENSMUSG00000110603.1 ENSMUSG00000110603 ENSMUST00000212661 Gm45741 lincRNA Interval_16482 chr10 63122266 63123285 + 0 NA promoter-TSS (ENSMUSG00000020067.8) protein_coding-promoter-TSS (ENSMUSG00000020067.8) -91 ENSMUSG00000020067.8 ENSMUSG00000020067 ENSMUST00000218978 Mypn protein_coding Interval_115992 chr4 106858334 106860189 + 0 NA Intergenic Intergenic -11341 ENSMUSG00000086940.1 ENSMUSG00000086940 ENSMUST00000151369 Gm12746 lincRNA Interval_77812 chr18 3905400 3905693 + 0 NA Intergenic Intergenic 45438 ENSMUSG00000084719.1 ENSMUSG00000084719 ENSMUST00000122770 Gm24632 misc_RNA Interval_58329 chr15 32416196 32417463 + 0 NA intron (ENSMUSG00000022231.10, intron 2 of 7) protein_coding-intron (ENSMUSG00000022231.10, intron 2 of 22) 172004 ENSMUSG00000022231.10 ENSMUSG00000022231 ENSMUST00000227429 Sema5a protein_coding Interval_38355 chr12 77716006 77716838 + 0 NA Intergenic Intergenic 33361 ENSMUSG00000111903.1 ENSMUSG00000111903 ENSMUST00000219952 4930458K08Rik lincRNA Interval_63655 chr15 102589068 102590481 + 0 NA intron (ENSMUSG00000099083.7, intron 2 of 2) protein_coding-intron (ENSMUSG00000099083.7, intron 2 of 10) 35293 ENSMUSG00000052414.9 ENSMUSG00000052414 ENSMUST00000184772 Gm28047 protein_coding Interval_46897 chr13 73271766 73272035 + 0 NA Intergenic Intergenic -1330 ENSMUSG00000113485.1 ENSMUSG00000113485 ENSMUST00000223190 Gm48000 TEC Interval_125797 chr5 74214410 74215841 + 0 NA intron (ENSMUSG00000062110.14, intron 1 of 2) protein_coding-intron (ENSMUSG00000062110.14, intron 7 of 8) 17234 ENSMUSG00000049907.8 ENSMUSG00000049907 ENSMUST00000201837 Rasl11b protein_coding Interval_91157 chr2 35544568 35545380 + 0 NA Intergenic Intergenic 13511 ENSMUSG00000086555.2 ENSMUSG00000086555 ENSMUST00000134679 Gm13446 processed_transcript Interval_74111 chr17 46596735 46597863 + 0 NA intron (ENSMUSG00000023972.10, intron 1 of 19) protein_coding-intron (ENSMUSG00000023972.10, intron 1 of 19) -24349 ENSMUSG00000023972.10 ENSMUSG00000023972 ENSMUST00000044442 Ptk7 protein_coding Interval_11265 chr1 180579544 180579966 + 0 NA TTS (ENSMUSG00000026496.11) protein_coding-TTS (ENSMUSG00000026496.11) -7446 ENSMUSG00000098926.1 ENSMUSG00000098926 ENSMUST00000183443 Mir6904 miRNA Interval_163957 chr9 29663140 29663476 + 0 NA intron (ENSMUSG00000059974.10, intron 1 of 2) protein_coding-intron (ENSMUSG00000059974.10, intron 1 of 7) -70798 ENSMUSG00000085638.1 ENSMUSG00000085638 ENSMUST00000141752 Gm15521 sense_intronic Interval_154022 chr8 11981607 11981871 + 0 NA intron (ENSMUSG00000109995.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000109995.1, intron 1 of 2) 33400 ENSMUSG00000109995.1 ENSMUSG00000109995 ENSMUST00000209977 B020031H02Rik lincRNA Interval_158645 chr8 84936641 84937675 + 0 NA intron (ENSMUSG00000053693.16, intron 1 of 2) protein_coding-intron (ENSMUSG00000053693.16, intron 1 of 25) -11525 ENSMUSG00000092826.1 ENSMUSG00000092826 ENSMUST00000175085 Gm24197 miRNA Interval_17270 chr10 75473326 75473649 + 0 NA intron (ENSMUSG00000033416.15, intron 2 of 3) protein_coding-intron (ENSMUSG00000033416.15, intron 5 of 8) 9905 ENSMUSG00000112764.1 ENSMUSG00000112764 ENSMUST00000218219 Gm48158 processed_pseudogene Interval_97471 chr2 136919326 136920398 + 0 NA intron (ENSMUSG00000027281.16, intron 1 of 6) protein_coding-intron (ENSMUSG00000027281.16, intron 2 of 5) 14319 ENSMUSG00000027281.16 ENSMUSG00000027281 ENSMUST00000180277 Slx4ip protein_coding Interval_53549 chr14 59008648 59008949 + 0 NA Intergenic Intergenic 37142 ENSMUSG00000114441.1 ENSMUSG00000114441 ENSMUST00000224109 Gm33472 lincRNA Interval_73938 chr17 45578795 45580332 + 0 NA Intergenic Intergenic -6308 ENSMUSG00000023944.14 ENSMUSG00000023944 ENSMUST00000130406 Hsp90ab1 protein_coding Interval_49079 chr13 107793529 107793804 + 0 NA intron (ENSMUSG00000032846.10, intron 1 of 12) protein_coding-intron (ENSMUSG00000032846.10, intron 2 of 14) 35614 ENSMUSG00000093334.2 ENSMUSG00000093334 ENSMUST00000175593 Gm22118 miRNA Interval_94933 chr2 101981091 101981533 + 0 NA intron (ENSMUSG00000048058.17, intron 4 of 5) protein_coding-intron (ENSMUSG00000048058.17, intron 4 of 5) -58317 ENSMUSG00000085417.1 ENSMUSG00000085417 ENSMUST00000123891 Gm13919 antisense Interval_141473 chr6 128465670 128468329 + 0 NA intron (ENSMUSG00000059659.7, intron 2 of 4) antisense-intron (ENSMUSG00000059659.7, intron 2 of 2) 6389 ENSMUSG00000107896.1 ENSMUSG00000107896 ENSMUST00000203602 Gm8719 processed_pseudogene Interval_53471 chr14 57710592 57711107 + 0 NA intron (ENSMUSG00000114942.1, intron 2 of 8) protein_coding-intron (ENSMUSG00000021959.16, intron 2 of 7) 12836 ENSMUSG00000092358.1 ENSMUSG00000092358 ENSMUST00000172474 Gm20430 processed_pseudogene Interval_156382 chr8 47837078 47837745 + 0 NA intron (ENSMUSG00000031563.8, intron 21 of 22) protein_coding-intron (ENSMUSG00000031563.8, intron 21 of 22) 12929 ENSMUSG00000038064.7 ENSMUSG00000038064 ENSMUST00000038693 Cldn22 protein_coding Interval_117104 chr4 119558495 119559606 + 0 NA intron (ENSMUSG00000032998.16, intron 2 of 6) protein_coding-intron (ENSMUSG00000032998.16, intron 1 of 12) -4992 ENSMUSG00000081678.1 ENSMUSG00000081678 ENSMUST00000119396 Gm12959 processed_pseudogene Interval_35130 chr12 17483783 17484647 + 0 NA Intergenic Intergenic 47597 ENSMUSG00000113246.1 ENSMUSG00000113246 ENSMUST00000220527 Gm36752 lincRNA Interval_111708 chr4 26443950 26444802 + 0 NA Intergenic Intergenic 1915 ENSMUSG00000082573.1 ENSMUSG00000082573 ENSMUST00000118958 Gm11903 processed_pseudogene Interval_171949 chr9 122858724 122860141 + 0 NA intron (ENSMUSG00000047036.8, intron 2 of 6) protein_coding-intron (ENSMUSG00000047036.8, intron 1 of 5) 6553 ENSMUSG00000047036.8 ENSMUSG00000047036 ENSMUST00000214558 Zfp445 protein_coding Interval_61346 chr15 80970028 80970693 + 0 NA exon (ENSMUSG00000022407.10, exon 13 of 13) protein_coding-exon (ENSMUSG00000022407.10, exon 13 of 13) -7529 ENSMUSG00000042303.19 ENSMUSG00000042303 ENSMUST00000156783 Sgsm3 protein_coding Interval_143593 chr7 13016025 13016958 + 0 NA intron (ENSMUSG00000005566.14, intron 1 of 6) protein_coding-intron (ENSMUSG00000005566.14, intron 1 of 6) -6691 ENSMUSG00000049600.8 ENSMUSG00000049600 ENSMUST00000210108 Zbtb45 protein_coding Interval_120784 chr4 150638176 150638711 + 0 NA exon (ENSMUSG00000039838.11, exon 5 of 9) protein_coding-exon (ENSMUSG00000039838.11, exon 5 of 9) 5646 ENSMUSG00000039838.11 ENSMUSG00000039838 ENSMUST00000147706 Slc45a1 protein_coding Interval_70808 chr17 14904420 14905181 + 0 NA intron (ENSMUSG00000046991.12, intron 17 of 24) protein_coding-intron (ENSMUSG00000046991.12, intron 16 of 22) -37165 ENSMUSG00000092577.1 ENSMUSG00000092577 ENSMUST00000172650 Gm7393 processed_pseudogene Interval_112378 chr4 40933131 40935467 + 0 NA Intergenic Intergenic 13995 ENSMUSG00000028416.13 ENSMUSG00000028416 ENSMUST00000030125 Bag1 protein_coding Interval_24269 chr11 31974987 31975475 + 0 NA intron (ENSMUSG00000020299.6, intron 3 of 4) protein_coding-intron (ENSMUSG00000020299.6, intron 3 of 4) 9639 ENSMUSG00000020299.6 ENSMUSG00000020299 ENSMUST00000102829 4930524B15Rik protein_coding Interval_143415 chr7 6548897 6549121 + 0 NA Intergenic Intergenic -14498 ENSMUSG00000109466.1 ENSMUSG00000109466 ENSMUST00000207618 Gm7587 processed_pseudogene Interval_95756 chr2 115859218 115861058 + 0 NA Intergenic Intergenic 8729 ENSMUSG00000027210.20 ENSMUSG00000027210 ENSMUST00000138526 Meis2 protein_coding Interval_116295 chr4 109413874 109414996 + 0 NA promoter-TSS (ENSMUSG00000028555.15) protein_coding-promoter-TSS (ENSMUSG00000028555.15) -341 ENSMUSG00000028555.15 ENSMUSG00000028555 ENSMUST00000139237 Ttc39a protein_coding Interval_136809 chr6 60646680 60647901 + 0 NA Intergenic Intergenic 60512 ENSMUSG00000108003.1 ENSMUSG00000108003 ENSMUST00000204603 Gm35386 lincRNA Interval_174418 chrX 151957914 151958773 + 0 NA Intergenic Intergenic 12975 ENSMUSG00000082778.1 ENSMUSG00000082778 ENSMUST00000117933 Gm15191 processed_pseudogene Interval_38552 chr12 80090745 80091851 + 0 NA promoter-TSS (ENSMUSG00000112386.1) lincRNA-promoter-TSS (ENSMUSG00000112386.1) -69 ENSMUSG00000112386.1 ENSMUSG00000112386 ENSMUST00000219740 Gm47752 lincRNA Interval_35983 chr12 33112106 33112779 + 0 NA intron (ENSMUSG00000084979.1, intron 1 of 2) bidirectional_promoter_lncRNA-intron (ENSMUSG00000052125.16, intron 5 of 5) 480 ENSMUSG00000084979.1 ENSMUSG00000084979 ENSMUST00000140569 Gm16267 lincRNA Interval_90753 chr2 32302731 32303385 + 0 NA TTS (ENSMUSG00000002546.17) protein_coding-TTS (ENSMUSG00000002546.17) 14805 ENSMUSG00000002546.17 ENSMUSG00000002546 ENSMUST00000146544 Golga2 protein_coding Interval_112748 chr4 44578511 44578927 + 0 NA intron (ENSMUSG00000014030.15, intron 6 of 8) protein_coding-intron (ENSMUSG00000014030.15, intron 6 of 8) 28849 ENSMUSG00000092761.1 ENSMUSG00000092761 ENSMUST00000175020 Mir5120 miRNA Interval_123039 chr5 29061819 29062639 + 0 NA Intergenic Intergenic -134358 ENSMUSG00000029130.12 ENSMUSG00000029130 ENSMUST00000163050 Rnf32 protein_coding Interval_93334 chr2 72024899 72026597 + 0 NA intron (ENSMUSG00000049044.16, intron 1 of 5) protein_coding-intron (ENSMUSG00000049044.16, intron 1 of 30) -25956 ENSMUSG00000088297.1 ENSMUSG00000088297 ENSMUST00000157672 Gm26408 snoRNA Interval_53294 chr14 55840486 55841297 + 0 NA Intergenic Intergenic 11422 ENSMUSG00000023411.12 ENSMUSG00000023411 ENSMUST00000226869 Nfatc4 protein_coding Interval_92158 chr2 54642911 54643234 + 0 NA intron (ENSMUSG00000060988.12, intron 2 of 2) protein_coding-intron (ENSMUSG00000060988.12, intron 1 of 10) -76936 ENSMUSG00000089272.1 ENSMUSG00000089272 ENSMUST00000158647 Gm24549 snoRNA Interval_143089 chr6 149198730 149199161 + 0 NA TTS (ENSMUSG00000107526.1) lincRNA-TTS (ENSMUSG00000107526.1) -10264 ENSMUSG00000068250.13 ENSMUSG00000068250 ENSMUST00000203043 Amn1 protein_coding Interval_132524 chr5 145745506 145745804 + 0 NA Intergenic Intergenic -14890 ENSMUSG00000105661.1 ENSMUSG00000105661 ENSMUST00000198575 Gm43626 processed_pseudogene Interval_86986 chr19 45350326 45351093 + 0 NA Intergenic Intergenic 12940 ENSMUSG00000114673.1 ENSMUSG00000114673 ENSMUST00000223748 1700016H03Rik antisense Interval_55578 chr14 93246537 93246922 + 0 NA intron (ENSMUSG00000055421.8, intron 3 of 3) protein_coding-intron (ENSMUSG00000055421.8, intron 3 of 3) -43828 ENSMUSG00000115632.1 ENSMUSG00000115632 ENSMUST00000226234 Gm17922 processed_pseudogene Interval_134696 chr6 30459857 30461458 + 0 NA promoter-TSS (ENSMUSG00000085470.1) lincRNA-promoter-TSS (ENSMUSG00000085470.1) 529 ENSMUSG00000085470.1 ENSMUSG00000085470 ENSMUST00000132023 1700012C14Rik lincRNA Interval_84634 chr19 14549969 14550400 + 0 NA intron (ENSMUSG00000024642.17, intron 3 of 3) protein_coding-intron (ENSMUSG00000024642.17, intron 5 of 19) 45355 ENSMUSG00000024642.17 ENSMUSG00000024642 ENSMUST00000235975 Tle4 protein_coding Interval_38322 chr12 77188923 77189749 + 0 NA Intergenic Intergenic 49327 ENSMUSG00000112150.1 ENSMUSG00000112150 ENSMUST00000219513 9530018F02Rik bidirectional_promoter_lncRNA Interval_61485 chr15 81912264 81912775 + 0 NA intron (ENSMUSG00000022477.13, intron 3 of 3) protein_coding-intron (ENSMUSG00000022477.13, intron 14 of 17) 12877 ENSMUSG00000022476.8 ENSMUSG00000022476 ENSMUST00000229402 Polr3h protein_coding Interval_64060 chr16 6855171 6855614 + 0 NA intron (ENSMUSG00000008658.16, intron 4 of 11) protein_coding-intron (ENSMUSG00000008658.16, intron 3 of 14) -338355 ENSMUSG00000008658.16 ENSMUSG00000008658 ENSMUST00000231031 Rbfox1 protein_coding Interval_171618 chr9 119580560 119581217 + 0 NA Intergenic Intergenic -17385 ENSMUSG00000032511.17 ENSMUSG00000032511 ENSMUST00000138934 Scn5a protein_coding Interval_149583 chr7 99836661 99836926 + 0 NA TTS (ENSMUSG00000035227.7) protein_coding-TTS (ENSMUSG00000035227.7) -8376 ENSMUSG00000035239.6 ENSMUSG00000035239 ENSMUST00000036331 Neu3 protein_coding Interval_23208 chr11 20570907 20571313 + 0 NA intron (ENSMUSG00000049800.13, intron 1 of 1) protein_coding-intron (ENSMUSG00000049800.13, intron 1 of 1) 4079 ENSMUSG00000083555.1 ENSMUSG00000083555 ENSMUST00000121890 Gm12035 processed_pseudogene Interval_166270 chr9 57910448 57911380 + 0 NA promoter-TSS (ENSMUSG00000055720.10) protein_coding-promoter-TSS (ENSMUSG00000055720.10) -1720 ENSMUSG00000055720.10 ENSMUSG00000055720 ENSMUST00000215936 Ubl7 protein_coding Interval_143001 chr6 148246695 148247122 + 0 NA intron (ENSMUSG00000030306.14, intron 16 of 16) protein_coding-intron (ENSMUSG00000030306.14, intron 15 of 19) -14242 ENSMUSG00000082199.1 ENSMUSG00000082199 ENSMUST00000120136 Gm15763 processed_pseudogene Interval_7628 chr1 132608958 132609692 + 0 NA intron (ENSMUSG00000026442.14, intron 13 of 19) protein_coding-intron (ENSMUSG00000026442.14, intron 14 of 26) 15187 ENSMUSG00000026442.14 ENSMUSG00000026442 ENSMUST00000189219 Nfasc protein_coding Interval_78765 chr18 20514286 20514622 + 0 NA intron (ENSMUSG00000056632.8, intron 1 of 18) protein_coding-intron (ENSMUSG00000056632.8, intron 1 of 15) 4171 ENSMUSG00000056632.8 ENSMUSG00000056632 ENSMUST00000234945 Dsg3 protein_coding Interval_123937 chr5 36747917 36749166 + 0 NA promoter-TSS (ENSMUSG00000107081.1) antisense-promoter-TSS (ENSMUSG00000107081.1) -77 ENSMUSG00000107081.1 ENSMUSG00000107081 ENSMUST00000202047 Gm43701 antisense Interval_16671 chr10 66951792 66952050 + 0 NA Intergenic Intergenic 31619 ENSMUSG00000097921.2 ENSMUSG00000097921 ENSMUST00000181018 Gm26576 lincRNA Interval_71086 chr17 17837501 17838822 + 0 NA promoter-TSS (ENSMUSG00000080316.11) protein_coding-promoter-TSS (ENSMUSG00000080316.11) 7349 ENSMUSG00000065479.2 ENSMUSG00000065479 ENSMUST00000083545 Mir125a miRNA Interval_64756 chr16 15292716 15295163 + 0 NA Intergenic Intergenic -23519 ENSMUSG00000094472.1 ENSMUSG00000094472 ENSMUST00000178312 Gm21897 protein_coding Interval_77560 chr17 91572787 91572998 + 0 NA intron (ENSMUSG00000117417.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000087425.1, intron 1 of 1) 6788 ENSMUSG00000117417.1 ENSMUSG00000117417 ENSMUST00000234155 Gm49991 lincRNA Interval_95609 chr2 112772819 112773095 + 0 NA intron (ENSMUSG00000057378.15, intron 47 of 103) protein_coding-intron (ENSMUSG00000057378.15, intron 47 of 102) -116409 ENSMUSG00000057378.15 ENSMUSG00000057378 ENSMUST00000208135 Ryr3 protein_coding Interval_145875 chr7 40976106 40977136 + 0 NA Intergenic Intergenic 6702 ENSMUSG00000099768.1 ENSMUSG00000099768 ENSMUST00000189416 Gm29293 unprocessed_pseudogene Interval_126989 chr5 99217965 99218712 + 0 NA TTS (ENSMUSG00000089809.9) protein_coding-TTS (ENSMUSG00000089809.9) -46917 ENSMUSG00000105579.2 ENSMUSG00000105579 ENSMUST00000198339 Gm43251 lincRNA Interval_49145 chr13 108509176 108510349 + 0 NA intron (ENSMUSG00000021699.17, intron 1 of 3) protein_coding-intron (ENSMUSG00000021699.17, intron 1 of 3) -10792 ENSMUSG00000099323.1 ENSMUSG00000099323 ENSMUST00000184594 Gm28016 misc_RNA Interval_124363 chr5 44707041 44707805 + 0 NA promoter-TSS (ENSMUSG00000105224.1) sense_intronic-promoter-TSS (ENSMUSG00000105224.1) -533 ENSMUSG00000105224.1 ENSMUSG00000105224 ENSMUST00000196016 Gm3364 sense_intronic Interval_23284 chr11 21163376 21164386 + 0 NA Intergenic Intergenic 34095 ENSMUSG00000088223.1 ENSMUSG00000088223 ENSMUST00000157598 Gm22600 misc_RNA Interval_160848 chr8 113691958 113692161 + 0 NA Intergenic Intergenic -15601 ENSMUSG00000110582.1 ENSMUSG00000110582 ENSMUST00000211951 Gm30052 lincRNA Interval_3017 chr1 52232173 52233766 + 0 NA promoter-TSS (ENSMUSG00000026103.14) protein_coding-promoter-TSS (ENSMUSG00000026103.14) -42060 ENSMUSG00000026103.14 ENSMUSG00000026103 ENSMUST00000142976 Gls protein_coding Interval_455 chr1 5532471 5532767 + 0 NA Intergenic Intergenic -55874 ENSMUSG00000025905.14 ENSMUSG00000025905 ENSMUST00000159083 Oprk1 protein_coding Interval_26147 chr11 54754226 54755327 + 0 NA intron (ENSMUSG00000052298.12, intron 2 of 4) protein_coding-intron (ENSMUSG00000052298.12, intron 2 of 5) -7952 ENSMUSG00000082503.1 ENSMUSG00000082503 ENSMUST00000120487 Gm12229 processed_pseudogene Interval_64451 chr16 11472319 11473021 + 0 NA intron (ENSMUSG00000071669.14, intron 13 of 20) protein_coding-intron (ENSMUSG00000071669.14, intron 6 of 13) 23636 ENSMUSG00000082653.1 ENSMUSG00000082653 ENSMUST00000117770 Gm15897 processed_pseudogene Interval_15998 chr10 60002337 60003705 + 0 NA promoter-TSS (ENSMUSG00000020107.10) protein_coding-promoter-TSS (ENSMUSG00000020107.10) 216 ENSMUSG00000044475.14 ENSMUSG00000044475 ENSMUST00000164083 Ascc1 protein_coding Interval_3630 chr1 60097489 60098903 + 0 NA promoter-TSS (ENSMUSG00000026019.15) protein_coding-promoter-TSS (ENSMUSG00000026019.15) -3050 ENSMUSG00000026017.13 ENSMUSG00000026017 ENSMUST00000132949 Carf protein_coding Interval_109520 chr3 143631778 143632046 + 0 NA Intergenic Intergenic -12978 ENSMUSG00000103816.1 ENSMUSG00000103816 ENSMUST00000192421 Gm38006 TEC Interval_83814 chr19 4832154 4832439 + 0 NA intron (ENSMUSG00000034108.6, intron 5 of 7) protein_coding-intron (ENSMUSG00000034108.6, intron 5 of 7) 6923 ENSMUSG00000034108.6 ENSMUSG00000034108 ENSMUST00000235425 Ccs protein_coding Interval_30696 chr11 95955618 95957773 + 0 NA TTS (ENSMUSG00000013415.9) protein_coding-TTS (ENSMUSG00000013415.9) 6688 ENSMUSG00000093358.1 ENSMUSG00000093358 ENSMUST00000175617 Mir3063 miRNA Interval_146606 chr7 47781216 47781730 + 0 NA Intergenic Intergenic -5261 ENSMUSG00000102109.1 ENSMUSG00000102109 ENSMUST00000187249 Gm29563 unprocessed_pseudogene Interval_145930 chr7 42169279 42170008 + 0 NA intron (ENSMUSG00000090619.2, intron 5 of 5) protein_coding-intron (ENSMUSG00000090619.2, intron 5 of 5) -43440 ENSMUSG00000092257.1 ENSMUSG00000092257 ENSMUST00000166539 Gm2308 processed_pseudogene Interval_20269 chr10 116547997 116548273 + 0 NA intron (ENSMUSG00000020166.15, intron 2 of 16) protein_coding-intron (ENSMUSG00000020166.15, intron 2 of 4) -16395 ENSMUSG00000093404.1 ENSMUSG00000093404 ENSMUST00000176664 Gm25190 miRNA Interval_124903 chr5 59940227 59941538 + 0 NA Intergenic Intergenic 15258 ENSMUSG00000104563.1 ENSMUSG00000104563 ENSMUST00000200022 Gm43041 TEC Interval_52778 chr14 49808175 49808471 + 0 NA intron (ENSMUSG00000115212.1, intron 1 of 2) transcribed_unprocessed_pseudogene-intron (ENSMUSG00000115212.1, intron 1 of 2) 2474 ENSMUSG00000115212.1 ENSMUSG00000115212 ENSMUST00000228347 Gm8417 transcribed_unprocessed_pseudogene Interval_72607 chr17 31000412 31001560 + 0 NA promoter-TSS (ENSMUSG00000054134.14) protein_coding-promoter-TSS (ENSMUSG00000054134.14) -30981 ENSMUSG00000118169.1 ENSMUSG00000118169 ENSMUST00000236274 Gm50249 antisense Interval_80246 chr18 38521363 38522114 + 0 NA Intergenic Intergenic -40435 ENSMUSG00000118112.1 ENSMUSG00000118112 ENSMUST00000236084 Gm50349 processed_pseudogene Interval_153159 chr7 141949185 141951088 + 0 NA promoter-TSS (ENSMUSG00000053046.16) protein_coding-promoter-TSS (ENSMUSG00000053046.16) -597 ENSMUSG00000092536.2 ENSMUSG00000092536 ENSMUST00000211303 Gm20501 bidirectional_promoter_lncRNA Interval_150900 chr7 116244650 116244884 + 0 NA intron (ENSMUSG00000045659.18, intron 3 of 18) protein_coding-intron (ENSMUSG00000045659.18, intron 3 of 26) 37976 ENSMUSG00000108650.1 ENSMUSG00000108650 ENSMUST00000205675 Gm44867 sense_intronic Interval_38101 chr12 75656756 75657427 + 0 NA intron (ENSMUSG00000045690.8, intron 1 of 2) protein_coding-intron (ENSMUSG00000045690.8, intron 1 of 1) 12436 ENSMUSG00000045690.8 ENSMUSG00000045690 ENSMUST00000187307 Wdr89 protein_coding Interval_113442 chr4 55024025 55024302 + 0 NA intron (ENSMUSG00000060206.11, intron 7 of 12) protein_coding-intron (ENSMUSG00000060206.11, intron 5 of 10) 79115 ENSMUSG00000060206.11 ENSMUSG00000060206 ENSMUST00000079605 Zfp462 protein_coding Interval_70663 chr17 12886225 12887043 + 0 NA Intergenic Intergenic 6389 ENSMUSG00000073460.5 ENSMUSG00000073460 ENSMUST00000232982 Pnldc1 protein_coding Interval_57802 chr15 20827334 20827787 + 0 NA intron (ENSMUSG00000040452.9, intron 2 of 3) protein_coding-intron (ENSMUSG00000040452.9, intron 2 of 3) -81312 ENSMUSG00000089258.1 ENSMUSG00000089258 ENSMUST00000158633 Gm25711 snoRNA Interval_18619 chr10 88559791 88560596 + 0 NA intron (ENSMUSG00000020061.18, intron 8 of 26) protein_coding-intron (ENSMUSG00000020061.18, intron 8 of 28) -42279 ENSMUSG00000112841.1 ENSMUSG00000112841 ENSMUST00000217743 Gm48752 TEC Interval_135155 chr6 37023778 37024238 + 0 NA intron (ENSMUSG00000038665.15, intron 15 of 32) protein_coding-intron (ENSMUSG00000038665.15, intron 15 of 32) 67158 ENSMUSG00000107310.1 ENSMUSG00000107310 ENSMUST00000202891 Gm7452 transcribed_processed_pseudogene Interval_96999 chr2 130390774 130391223 + 0 NA exon (ENSMUSG00000027408.7, exon 14 of 14) protein_coding-exon (ENSMUSG00000027408.7, exon 14 of 14) 2278 ENSMUSG00000027408.7 ENSMUSG00000027408 ENSMUST00000130533 Cpxm1 protein_coding Interval_92737 chr2 64853406 64854359 + 0 NA Intergenic Intergenic 14706 ENSMUSG00000084104.1 ENSMUSG00000084104 ENSMUST00000120849 Gm13578 processed_pseudogene Interval_133127 chr5 150049958 150050823 + 0 NA intron (ENSMUSG00000053368.13, intron 7 of 15) protein_coding-intron (ENSMUSG00000053368.13, intron 7 of 17) 27911 ENSMUSG00000107360.1 ENSMUSG00000107360 ENSMUST00000200982 Gm42558 sense_intronic Interval_38393 chr12 78617526 78617823 + 0 NA intron (ENSMUSG00000047454.12, intron 13 of 22) protein_coding-intron (ENSMUSG00000047454.12, intron 14 of 23) -64973 ENSMUSG00000047454.12 ENSMUSG00000047454 ENSMUST00000219629 Gphn protein_coding Interval_118682 chr4 133174160 133174426 + 0 NA intron (ENSMUSG00000028868.13, intron 2 of 2) protein_coding-intron (ENSMUSG00000028868.13, intron 1 of 8) -2579 ENSMUSG00000089298.1 ENSMUSG00000089298 ENSMUST00000158673 Gm24636 misc_RNA Interval_149678 chr7 100582488 100583371 + 0 NA exon (ENSMUSG00000030706.17, exon 1 of 1) protein_coding-exon (ENSMUSG00000030706.17, exon 1 of 1) 146 ENSMUSG00000030706.17 ENSMUSG00000030706 ENSMUST00000127253 Mrpl48 protein_coding Interval_66255 chr16 32672345 32673273 + 0 NA promoter-TSS (ENSMUSG00000022791.19) protein_coding-promoter-TSS (ENSMUSG00000022791.19) -4612 ENSMUSG00000075265.4 ENSMUSG00000075265 ENSMUST00000141256 Tnk2os antisense Interval_173317 chrX 78582986 78584559 + 0 NA promoter-TSS (ENSMUSG00000047996.16) protein_coding-promoter-TSS (ENSMUSG00000047996.16) 10 ENSMUSG00000047996.16 ENSMUSG00000047996 ENSMUST00000137011 Prrg1 protein_coding Interval_5 GL456210.1 37887 38157 + 0 NA NA NA NA NA Interval_52757 chr14 49423908 49424118 + 0 NA intron (ENSMUSG00000021852.14, intron 1 of 2) protein_coding-intron (ENSMUSG00000021852.14, intron 1 of 7) 96156 ENSMUSG00000089416.1 ENSMUSG00000089416 ENSMUST00000158791 Gm22116 snRNA Interval_153680 chr8 4511758 4512873 + 0 NA intron (ENSMUSG00000008206.16, intron 2 of 4) protein_coding-intron (ENSMUSG00000008206.16, intron 1 of 10) 9810 ENSMUSG00000102201.1 ENSMUSG00000102201 ENSMUST00000193830 Gm36956 TEC Interval_23251 chr11 20913688 20914839 + 0 NA Intergenic Intergenic 23438 ENSMUSG00000096061.1 ENSMUSG00000096061 ENSMUST00000178821 Gm23681 miRNA Interval_82510 chr18 74789573 74789822 + 0 NA intron (ENSMUSG00000036880.10, intron 2 of 9) protein_coding-intron (ENSMUSG00000036880.10, intron 2 of 9) -3686 ENSMUSG00000036880.10 ENSMUSG00000036880 ENSMUST00000237306 Acaa2 protein_coding Interval_76264 chr17 78591581 78592780 + 0 NA intron (ENSMUSG00000024076.10, intron 6 of 12) protein_coding-intron (ENSMUSG00000024076.10, intron 7 of 13) 18252 ENSMUSG00000024076.10 ENSMUSG00000024076 ENSMUST00000232864 Vit protein_coding Interval_97438 chr2 136307359 136307645 + 0 NA intron (ENSMUSG00000039913.12, intron 1 of 1) protein_coding-intron (ENSMUSG00000039913.12, intron 2 of 10) 80465 ENSMUSG00000039913.12 ENSMUSG00000039913 ENSMUST00000143329 Pak7 protein_coding Interval_114748 chr4 84705445 84705697 + 0 NA Intergenic Intergenic 7708 ENSMUSG00000081775.1 ENSMUSG00000081775 ENSMUST00000119869 Gm12420 processed_pseudogene Interval_138348 chr6 87483265 87483659 + 0 NA intron (ENSMUSG00000030047.14, intron 4 of 10) protein_coding-intron (ENSMUSG00000030047.14, intron 3 of 9) -19815 ENSMUSG00000030047.14 ENSMUSG00000030047 ENSMUST00000203559 Arhgap25 protein_coding Interval_75535 chr17 67837548 67838400 + 0 NA Intergenic Intergenic 13089 ENSMUSG00000090955.1 ENSMUSG00000090955 ENSMUST00000166414 Gm17097 processed_pseudogene Interval_164690 chr9 40616265 40618246 + 0 NA promoter-TSS (ENSMUSG00000111504.1) lincRNA-promoter-TSS (ENSMUSG00000111504.1) -869 ENSMUSG00000111504.1 ENSMUSG00000111504 ENSMUST00000216936 Gm48284 lincRNA Interval_164184 chr9 32271706 32272542 + 0 NA Intergenic Intergenic 47532 ENSMUSG00000041444.14 ENSMUSG00000041444 ENSMUST00000174730 Arhgap32 protein_coding Interval_147282 chr7 65467224 65468569 + 0 NA intron (ENSMUSG00000030516.14, intron 2 of 4) protein_coding-intron (ENSMUSG00000030516.14, intron 2 of 4) 13325 ENSMUSG00000108533.1 ENSMUSG00000108533 ENSMUST00000207008 Gm44792 TEC Interval_98921 chr2 156035099 156035505 + 0 NA intron (ENSMUSG00000013338.16, intron 3 of 4) protein_coding-intron (ENSMUSG00000013338.16, intron 26 of 44) 1326 ENSMUSG00000013338.16 ENSMUSG00000013338 ENSMUST00000130764 Fer1l4 protein_coding Interval_89683 chr2 24560437 24560723 + 0 NA intron (ENSMUSG00000085330.1, intron 2 of 3) lincRNA-intron (ENSMUSG00000085330.1, intron 2 of 3) 6117 ENSMUSG00000085330.1 ENSMUSG00000085330 ENSMUST00000155475 Gm13417 lincRNA Interval_85168 chr19 23310053 23310379 + 0 NA intron (ENSMUSG00000033207.7, intron 11 of 12) protein_coding-intron (ENSMUSG00000033207.7, intron 12 of 13) 13887 ENSMUSG00000096249.1 ENSMUSG00000096249 ENSMUST00000104059 Gm24263 snRNA Interval_44028 chr13 39954630 39955307 + 0 NA Intergenic Intergenic -70587 ENSMUSG00000114957.1 ENSMUSG00000114957 ENSMUST00000224937 Gm47316 lincRNA Interval_54152 chr14 65767109 65768190 + 0 NA Intergenic Intergenic -38288 ENSMUSG00000022033.9 ENSMUSG00000022033 ENSMUST00000139644 Pbk protein_coding Interval_153032 chr7 140980643 140981874 + 0 NA Intergenic Intergenic 12255 ENSMUSG00000110355.1 ENSMUSG00000110355 ENSMUST00000209475 Gm7514 processed_pseudogene Interval_106965 chr3 102224635 102224820 + 0 NA Intergenic Intergenic -20764 ENSMUSG00000027860.15 ENSMUSG00000027860 ENSMUST00000161722 Vangl1 protein_coding Interval_77289 chr17 87822776 87823322 + 0 NA Intergenic Intergenic -2024 ENSMUSG00000117466.1 ENSMUSG00000117466 ENSMUST00000234350 Gm50039 lincRNA Interval_172974 chrX 58157136 58157889 + 0 NA Intergenic Intergenic 26974 ENSMUSG00000081837.1 ENSMUSG00000081837 ENSMUST00000121814 Gm14649 processed_pseudogene Interval_154054 chr8 12324784 12325450 + 0 NA Intergenic Intergenic -5637 ENSMUSG00000110412.1 ENSMUSG00000110412 ENSMUST00000211562 Gm33175 lincRNA Interval_98509 chr2 152869137 152870079 + 0 NA promoter-TSS (ENSMUSG00000027469.16) protein_coding-promoter-TSS (ENSMUSG00000027469.16) 4541 ENSMUSG00000093746.1 ENSMUSG00000093746 ENSMUST00000175928 Mir5622 miRNA Interval_79448 chr18 31938358 31939528 + 0 NA promoter-TSS (ENSMUSG00000024395.9) protein_coding-promoter-TSS (ENSMUSG00000024395.9) 1667 ENSMUSG00000024395.9 ENSMUSG00000024395 ENSMUST00000224328 Lims2 protein_coding Interval_111904 chr4 32390629 32390821 + 0 NA intron (ENSMUSG00000040270.16, intron 2 of 3) protein_coding-intron (ENSMUSG00000040270.16, intron 2 of 7) -26710 ENSMUSG00000040270.16 ENSMUSG00000040270 ENSMUST00000125263 Bach2 protein_coding Interval_15847 chr10 58364048 58365810 + 0 NA intron (ENSMUSG00000019920.18, intron 1 of 9) protein_coding-intron (ENSMUSG00000019920.18, intron 1 of 9) -6525 ENSMUSG00000019920.18 ENSMUSG00000019920 ENSMUST00000148799 Lims1 protein_coding Interval_166690 chr9 61965039 61966152 + 0 NA intron (ENSMUSG00000032278.11, intron 2 of 4) protein_coding-intron (ENSMUSG00000032278.11, intron 5 of 7) -40474 ENSMUSG00000032254.10 ENSMUSG00000032254 ENSMUST00000215404 Kif23 protein_coding Interval_1183 chr1 16682427 16682684 + 0 NA Intergenic Intergenic -5496 ENSMUSG00000025779.10 ENSMUSG00000025779 ENSMUST00000190366 Ly96 protein_coding Interval_75850 chr17 71811689 71811916 + 0 NA intron (ENSMUSG00000024059.10, intron 9 of 16) protein_coding-intron (ENSMUSG00000024059.10, intron 8 of 15) -16705 ENSMUSG00000024059.10 ENSMUSG00000024059 ENSMUST00000230290 Clip4 protein_coding Interval_65147 chr16 20178983 20180348 + 0 NA exon (ENSMUSG00000041215.16, exon 9 of 30) protein_coding-exon (ENSMUSG00000041215.16, exon 9 of 30) -2653 ENSMUSG00000084838.3 ENSMUSG00000084838 ENSMUST00000117664 Gm10241 processed_pseudogene Interval_92812 chr2 65817926 65818744 + 0 NA Intergenic Intergenic 42284 ENSMUSG00000052865.5 ENSMUSG00000052865 ENSMUST00000155722 Gm13619 antisense Interval_33377 chr11 116205870 116206687 + 0 NA exon (ENSMUSG00000020778.12, exon 2 of 2) protein_coding-exon (ENSMUSG00000020778.12, exon 2 of 2) 7319 ENSMUSG00000020778.12 ENSMUSG00000020778 ENSMUST00000135460 Ten1 protein_coding Interval_98575 chr2 153344979 153347139 + 0 NA promoter-TSS (ENSMUSG00000073236.4) processed_transcript-promoter-TSS (ENSMUSG00000073236.4) 14 ENSMUSG00000073236.4 ENSMUSG00000073236 ENSMUST00000139636 2500004C02Rik processed_transcript Interval_61421 chr15 81525137 81525339 + 0 NA Intergenic Intergenic -25693 ENSMUSG00000091198.2 ENSMUSG00000091198 ENSMUST00000172270 Gm5218 processed_pseudogene Interval_166050 chr9 56089438 56090787 + 0 NA exon (ENSMUSG00000032322.14, exon 1 of 15) protein_coding-exon (ENSMUSG00000032322.14, exon 1 of 15) 136 ENSMUSG00000032322.14 ENSMUSG00000032322 ENSMUST00000132800 Pstpip1 protein_coding Interval_160124 chr8 106602987 106604350 + 0 NA promoter-TSS (ENSMUSG00000000303.12) protein_coding-promoter-TSS (ENSMUSG00000000303.12) 289 ENSMUSG00000000303.12 ENSMUSG00000000303 ENSMUST00000136580 Cdh1 protein_coding Interval_53552 chr14 59051457 59051904 + 0 NA intron (ENSMUSG00000114441.1, intron 2 of 2) lincRNA-intron (ENSMUSG00000114441.1, intron 2 of 2) 5559 ENSMUSG00000114720.1 ENSMUSG00000114720 ENSMUST00000225652 Gm41162 lincRNA Interval_9531 chr1 158697666 158697866 + 0 NA Intergenic Intergenic -143467 ENSMUSG00000103971.1 ENSMUSG00000103971 ENSMUST00000192868 Gm37679 antisense Interval_88480 chr2 5467177 5467476 + 0 NA intron (ENSMUSG00000039145.16, intron 2 of 2) protein_coding-intron (ENSMUSG00000039145.16, intron 2 of 10) -136245 ENSMUSG00000082013.1 ENSMUSG00000082013 ENSMUST00000117145 Gm13216 processed_pseudogene Interval_168347 chr9 79227658 79227875 + 0 NA intron (ENSMUSG00000111638.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000111638.1, intron 1 of 1) -10854 ENSMUSG00000102020.1 ENSMUSG00000102020 ENSMUST00000190463 Gm28620 lincRNA Interval_142693 chr6 145029921 145030159 + 0 NA intron (ENSMUSG00000030268.17, intron 2 of 5) protein_coding-intron (ENSMUSG00000030268.17, intron 5 of 10) 8148 ENSMUSG00000088867.1 ENSMUSG00000088867 ENSMUST00000158242 Gm23071 rRNA Interval_21379 chr10 128269639 128271141 + 0 NA promoter-TSS (ENSMUSG00000040033.16) protein_coding-promoter-TSS (ENSMUSG00000040033.16) 2393 ENSMUSG00000047631.4 ENSMUSG00000047631 ENSMUST00000050901 Apof protein_coding Interval_69246 chr16 91646683 91648389 + 0 NA promoter-TSS (ENSMUSG00000022962.15) protein_coding-promoter-TSS (ENSMUSG00000022962.15) -24519 ENSMUSG00000022962.15 ENSMUSG00000022962 ENSMUST00000231775 Gart protein_coding Interval_112360 chr4 40825118 40825442 + 0 NA intron (ENSMUSG00000028413.13, intron 1 of 4) protein_coding-intron (ENSMUSG00000028413.13, intron 1 of 5) 24858 ENSMUSG00000096377.1 ENSMUSG00000096377 ENSMUST00000177794 Mir5123 miRNA Interval_21727 chr11 3974497 3975258 + 0 NA intron (ENSMUSG00000020430.12, intron 6 of 14) protein_coding-intron (ENSMUSG00000020430.12, intron 6 of 14) 1901 ENSMUSG00000034493.1 ENSMUSG00000034493 ENSMUST00000042344 4930556J24Rik protein_coding Interval_110414 chr3 157903106 157903962 + 0 NA intron (ENSMUSG00000028179.12, intron 1 of 1) protein_coding-intron (ENSMUSG00000028179.12, intron 10 of 11) 2191 ENSMUSG00000028179.12 ENSMUSG00000028179 ENSMUST00000125028 Cth protein_coding Interval_24039 chr11 29700176 29700736 + 0 NA intron (ENSMUSG00000020458.16, intron 1 of 8) protein_coding-intron (ENSMUSG00000020458.16, intron 1 of 6) 7508 ENSMUSG00000020458.16 ENSMUSG00000020458 ENSMUST00000126162 Rtn4 protein_coding Interval_125001 chr5 63648439 63650790 + 0 NA TTS (ENSMUSG00000104868.1) TEC-TTS (ENSMUSG00000104868.1) 1280 ENSMUSG00000104868.1 ENSMUSG00000104868 ENSMUST00000067917 Gm9954 TEC Interval_105390 chr3 85932106 85932297 + 0 NA Intergenic Intergenic 16418 ENSMUSG00000044330.8 ENSMUSG00000044330 ENSMUST00000054148 Gm9790 processed_pseudogene Interval_147921 chr7 75562475 75562683 + 0 NA exon (ENSMUSG00000108557.1, exon 1 of 1) TEC-exon (ENSMUSG00000108557.1, exon 1 of 1) 1965 ENSMUSG00000108557.1 ENSMUSG00000108557 ENSMUST00000205544 Gm44835 TEC Interval_97386 chr2 135679265 135680704 + 0 NA intron (ENSMUSG00000039943.16, intron 1 of 2) protein_coding-intron (ENSMUSG00000039943.16, intron 1 of 28) 10531 ENSMUSG00000085908.1 ENSMUSG00000085908 ENSMUST00000154946 Gm14209 sense_intronic Interval_42171 chr13 9464276 9464658 + 0 NA intron (ENSMUSG00000048264.16, intron 1 of 36) protein_coding-intron (ENSMUSG00000048264.16, intron 1 of 38) 18567 ENSMUSG00000112948.1 ENSMUSG00000112948 ENSMUST00000223468 Gm48871 TEC Interval_12869 chr10 7101574 7102022 + 0 NA Intergenic Intergenic 33708 ENSMUSG00000015202.13 ENSMUSG00000015202 ENSMUST00000015346 Cnksr3 protein_coding Interval_10569 chr1 171926201 171926470 + 0 NA intron (ENSMUSG00000015314.10, intron 1 of 1) protein_coding-intron (ENSMUSG00000015314.10, intron 1 of 7) -6979 ENSMUSG00000104413.1 ENSMUSG00000104413 ENSMUST00000191636 Gm37065 antisense Interval_110077 chr3 153068036 153068318 + 0 NA Intergenic Intergenic -86125 ENSMUSG00000039037.5 ENSMUSG00000039037 ENSMUST00000161757 St6galnac5 protein_coding Interval_145119 chr7 30154114 30156111 + 0 NA Intergenic Intergenic 3271 ENSMUSG00000108926.1 ENSMUSG00000108926 ENSMUST00000209150 Gm10988 processed_pseudogene Interval_51168 chr14 24349067 24349301 + 0 NA Intergenic Intergenic -9175 ENSMUSG00000114913.1 ENSMUSG00000114913 ENSMUST00000223662 Gm18276 processed_pseudogene Interval_51367 chr14 27047256 27047619 + 0 NA intron (ENSMUSG00000040717.6, intron 1 of 12) protein_coding-intron (ENSMUSG00000040717.6, intron 1 of 12) -19960 ENSMUSG00000040717.6 ENSMUSG00000040717 ENSMUST00000225829 Il17rd protein_coding Interval_105711 chr3 88695452 88695829 + 0 NA intron (ENSMUSG00000028060.14, intron 6 of 9) protein_coding-intron (ENSMUSG00000028060.14, intron 6 of 13) 1709 ENSMUSG00000105288.1 ENSMUSG00000105288 ENSMUST00000198589 Gm25820 scaRNA Interval_47296 chr13 80842372 80842918 + 0 NA Intergenic Intergenic 42879 ENSMUSG00000089827.1 ENSMUSG00000089827 ENSMUST00000161006 1700023H06Rik processed_transcript Interval_108481 chr3 127544488 127545923 + 0 NA promoter-TSS (ENSMUSG00000065413.2) miRNA-promoter-TSS (ENSMUSG00000065413.2) -23 ENSMUSG00000076252.1 ENSMUSG00000076252 ENSMUST00000102297 Mir302b miRNA Interval_68393 chr16 75695173 75695411 + 0 NA intron (ENSMUSG00000116643.2, intron 5 of 7) transcribed_unprocessed_pseudogene-intron (ENSMUSG00000116643.2, intron 3 of 4) 20229 ENSMUSG00000116643.2 ENSMUSG00000116643 ENSMUST00000231519 Gm30162 transcribed_unprocessed_pseudogene Interval_164759 chr9 41222963 41224427 + 0 NA Intergenic Intergenic -5187 ENSMUSG00000111308.1 ENSMUSG00000111308 ENSMUST00000213107 Gm48710 TEC Interval_69382 chr16 92605439 92606199 + 0 NA exon (ENSMUSG00000022952.17, exon 8 of 8) protein_coding-exon (ENSMUSG00000022952.17, exon 8 of 8) -6995 ENSMUSG00000097139.3 ENSMUSG00000097139 ENSMUST00000180989 Gm26626 antisense Interval_72385 chr17 29518201 29518555 + 0 NA TTS (ENSMUSG00000091614.2) protein_coding-TTS (ENSMUSG00000091614.2) 25341 ENSMUSG00000024014.8 ENSMUSG00000024014 ENSMUST00000234270 Pim1 protein_coding Interval_4544 chr1 74907255 74907620 + 0 NA exon (ENSMUSG00000047021.14, exon 24 of 33) protein_coding-exon (ENSMUSG00000047021.14, exon 24 of 33) 5066 ENSMUSG00000089653.1 ENSMUSG00000089653 ENSMUST00000160540 Gm15841 antisense Interval_26052 chr11 53777836 53778999 + 0 NA TTS (ENSMUSG00000018899.16) protein_coding-TTS (ENSMUSG00000018899.16) -5222 ENSMUSG00000091191.2 ENSMUSG00000091191 ENSMUST00000170390 Gm17334 TEC Interval_36564 chr12 50197894 50198113 + 0 NA Intergenic Intergenic 77694 ENSMUSG00000112353.1 ENSMUSG00000112353 ENSMUST00000218806 Gm40418 lincRNA Interval_124244 chr5 42036189 42036958 + 0 NA Intergenic Intergenic -31387 ENSMUSG00000067285.4 ENSMUSG00000067285 ENSMUST00000087332 Gm16223 protein_coding Interval_92789 chr2 65436431 65437662 + 0 NA Intergenic Intergenic -60764 ENSMUSG00000088197.1 ENSMUSG00000088197 ENSMUST00000157572 Gm24138 snoRNA Interval_130620 chr5 129251429 129252472 + 0 NA Intergenic Intergenic -112170 ENSMUSG00000104681.1 ENSMUSG00000104681 ENSMUST00000199076 Gm43001 lincRNA Interval_156281 chr8 46924918 46925320 + 0 NA Intergenic Intergenic 23680 ENSMUSG00000109759.1 ENSMUSG00000109759 ENSMUST00000210613 1700011L03Rik lincRNA Interval_160083 chr8 106264787 106266021 + 0 NA exon (ENSMUSG00000031906.9, exon 3 of 9) protein_coding-exon (ENSMUSG00000031906.9, exon 3 of 9) 15574 ENSMUSG00000031906.9 ENSMUSG00000031906 ENSMUST00000212896 Smpd3 protein_coding Interval_23047 chr11 19331544 19331832 + 0 NA Intergenic Intergenic 29381 ENSMUSG00000081054.1 ENSMUSG00000081054 ENSMUST00000117768 Gm12025 processed_pseudogene Interval_128745 chr5 115045260 115045997 + 0 NA intron (ENSMUSG00000029550.11, intron 2 of 2) protein_coding-intron (ENSMUSG00000029550.11, intron 1 of 10) 5858 ENSMUSG00000107054.1 ENSMUSG00000107054 ENSMUST00000201944 C730045M19Rik TEC Interval_124949 chr5 61631084 61631650 + 0 NA Intergenic Intergenic -28329 ENSMUSG00000105675.1 ENSMUSG00000105675 ENSMUST00000195981 Gm43383 processed_pseudogene Interval_78097 chr18 7959915 7960253 + 0 NA Intergenic Intergenic 27302 ENSMUSG00000091019.1 ENSMUSG00000091019 ENSMUST00000169235 Gm7502 processed_pseudogene Interval_72413 chr17 29675722 29676160 + 0 NA promoter-TSS (ENSMUSG00000024019.18) protein_coding-promoter-TSS (ENSMUSG00000024019.18) 15327 ENSMUSG00000024019.18 ENSMUSG00000024019 ENSMUST00000234666 Cmtr1 protein_coding Interval_128166 chr5 111419865 111420534 + 0 NA exon (ENSMUSG00000070576.4, exon 1 of 2) protein_coding-exon (ENSMUSG00000070576.4, exon 1 of 2) 2837 ENSMUSG00000070576.4 ENSMUSG00000070576 ENSMUST00000094463 Mn1 protein_coding Interval_11855 chr1 186362855 186363981 + 0 NA Intergenic Intergenic 16103 ENSMUSG00000102217.1 ENSMUSG00000102217 ENSMUST00000192552 Gm37491 TEC Interval_80722 chr18 46589927 46590200 + 0 NA exon (ENSMUSG00000033184.14, exon 2 of 2) protein_coding-exon (ENSMUSG00000033184.14, exon 2 of 2) 7472 ENSMUSG00000033184.14 ENSMUSG00000033184 ENSMUST00000151189 Tmed7 protein_coding Interval_67478 chr16 49528652 49529038 + 0 NA Intergenic Intergenic 104039 ENSMUSG00000097959.2 ENSMUSG00000097959 ENSMUST00000183137 Gm6931 processed_pseudogene Interval_171499 chr9 118862179 118864595 + 0 NA intron (ENSMUSG00000039115.13, intron 4 of 5) protein_coding-intron (ENSMUSG00000039115.13, intron 23 of 27) -8682 ENSMUSG00000039115.13 ENSMUSG00000039115 ENSMUST00000155437 Itga9 protein_coding Interval_126448 chr5 88633941 88635564 + 0 NA intron (ENSMUSG00000029291.11, intron 11 of 14) protein_coding-intron (ENSMUSG00000029291.11, intron 9 of 12) -11939 ENSMUSG00000029291.11 ENSMUSG00000029291 ENSMUST00000199956 Rufy3 protein_coding Interval_23475 chr11 22826204 22826668 + 0 NA intron (ENSMUSG00000051650.11, intron 1 of 5) protein_coding-intron (ENSMUSG00000051650.11, intron 1 of 5) -12863 ENSMUSG00000092455.1 ENSMUSG00000092455 ENSMUST00000174690 Gm20456 processed_transcript Interval_140002 chr6 113332859 113333252 + 0 NA promoter-TSS (ENSMUSG00000030271.14) protein_coding-promoter-TSS (ENSMUSG00000030271.14) 6042 ENSMUSG00000030271.14 ENSMUSG00000030271 ENSMUST00000147945 Ogg1 protein_coding Interval_153489 chr7 145172357 145174143 + 0 NA Intergenic Intergenic 10254 ENSMUSG00000108967.1 ENSMUSG00000108967 ENSMUST00000207878 Gm45181 lincRNA Interval_101267 chr2 179988829 179990198 + 0 NA Intergenic Intergenic -3675 ENSMUSG00000082850.1 ENSMUSG00000082850 ENSMUST00000117586 Gm14299 processed_pseudogene Interval_82940 chr18 79786760 79787058 + 0 NA Intergenic Intergenic 74990 ENSMUSG00000117963.1 ENSMUSG00000117963 ENSMUST00000237996 Gm19062 processed_pseudogene Interval_102453 chr3 26783912 26784774 + 0 NA intron (ENSMUSG00000039335.11, intron 4 of 9) protein_coding-intron (ENSMUSG00000039335.11, intron 4 of 10) 146693 ENSMUSG00000039335.11 ENSMUSG00000039335 ENSMUST00000108305 Spata16 protein_coding Interval_153572 chr8 3475677 3476392 + 0 NA exon (ENSMUSG00000040340.13, exon 2 of 9) protein_coding-exon (ENSMUSG00000040340.13, exon 2 of 9) 185 ENSMUSG00000040340.13 ENSMUSG00000040340 ENSMUST00000161680 Tex45 protein_coding Interval_52089 chr14 35643647 35644264 + 0 NA Intergenic Intergenic 74002 ENSMUSG00000098696.1 ENSMUSG00000098696 ENSMUST00000184321 Gm27617 misc_RNA Interval_120705 chr4 150197408 150198534 + 0 NA intron (ENSMUSG00000028972.11, intron 1 of 6) protein_coding-intron (ENSMUSG00000028972.11, intron 2 of 7) -1848 ENSMUSG00000028972.11 ENSMUSG00000028972 ENSMUST00000126449 Car6 protein_coding Interval_118417 chr4 131273586 131273985 + 0 NA Intergenic Intergenic 34508 ENSMUSG00000088041.1 ENSMUSG00000088041 ENSMUST00000157416 Gm25261 snoRNA Interval_49311 chr13 110562846 110563132 + 0 NA Intergenic Intergenic -65007 ENSMUSG00000109853.1 ENSMUSG00000109853 ENSMUST00000211420 Gm33045 lincRNA Interval_22171 chr11 6777681 6779580 + 0 NA Intergenic Intergenic 4508 ENSMUSG00000083819.1 ENSMUSG00000083819 ENSMUST00000118511 Gm11977 processed_pseudogene Interval_154825 chr8 23837360 23837577 + 0 NA intron (ENSMUSG00000037492.16, intron 4 of 7) protein_coding-intron (ENSMUSG00000037492.16, intron 3 of 6) -84703 ENSMUSG00000109158.1 ENSMUSG00000109158 ENSMUST00000209073 Gm45166 TEC Interval_32532 chr11 108205094 108205457 + 0 NA intron (ENSMUSG00000050965.14, intron 2 of 2) protein_coding-intron (ENSMUSG00000050965.14, intron 2 of 16) 23425 ENSMUSG00000084978.1 ENSMUSG00000084978 ENSMUST00000153899 Gm11655 antisense Interval_74122 chr17 46634993 46636121 + 0 NA intron (ENSMUSG00000003546.10, intron 11 of 15) protein_coding-intron (ENSMUSG00000003546.10, intron 11 of 15) 10465 ENSMUSG00000003546.10 ENSMUSG00000003546 ENSMUST00000003642 Klc4 protein_coding Interval_46687 chr13 69169927 69171479 + 0 NA Intergenic Intergenic 29474 ENSMUSG00000097522.1 ENSMUSG00000097522 ENSMUST00000181690 Gm26844 lincRNA Interval_68000 chr16 62940369 62940848 + 0 NA Intergenic Intergenic 42459 ENSMUSG00000022912.8 ENSMUSG00000022912 ENSMUST00000127502 Pros1 protein_coding Interval_16525 chr10 63360032 63361171 + 0 NA intron (ENSMUSG00000085372.1, intron 2 of 2) protein_coding-intron (ENSMUSG00000020063.16, intron 3 of 13) 6748 ENSMUSG00000085372.1 ENSMUSG00000085372 ENSMUST00000128807 Gm16145 antisense Interval_101513 chr3 3349337 3349898 + 0 NA Intergenic Intergenic -82590 ENSMUSG00000103028.1 ENSMUSG00000103028 ENSMUST00000195392 Gm8747 processed_pseudogene Interval_132490 chr5 145290233 145291300 + 0 NA exon (ENSMUSG00000070420.4, exon 5 of 5) protein_coding-exon (ENSMUSG00000070420.4, exon 5 of 5) -2004 ENSMUSG00000104682.1 ENSMUSG00000104682 ENSMUST00000197174 Gm42636 TEC Interval_19989 chr10 111723821 111724358 + 0 NA Intergenic Intergenic -1095 ENSMUSG00000112430.1 ENSMUSG00000112430 ENSMUST00000220039 Gm30624 lincRNA Interval_123066 chr5 29379910 29380719 + 0 NA intron (ENSMUSG00000097561.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000097561.1, intron 1 of 1) 1615 ENSMUSG00000097561.1 ENSMUSG00000097561 ENSMUST00000181005 4632411P08Rik lincRNA Interval_157894 chr8 75267528 75268018 + 0 NA Intergenic Intergenic 7891 ENSMUSG00000110515.1 ENSMUSG00000110515 ENSMUST00000212828 Gm9644 processed_pseudogene Interval_158330 chr8 81408633 81409319 + 0 NA intron (ENSMUSG00000037940.17, intron 1 of 24) protein_coding-intron (ENSMUSG00000037940.17, intron 1 of 23) 66414 ENSMUSG00000037940.17 ENSMUSG00000037940 ENSMUST00000165821 Inpp4b protein_coding Interval_40047 chr12 100849282 100850016 + 0 NA promoter-TSS (ENSMUSG00000021185.16) protein_coding-promoter-TSS (ENSMUSG00000021185.16) -687 ENSMUSG00000021185.16 ENSMUSG00000021185 ENSMUST00000133970 Dglucy protein_coding Interval_73049 chr17 34391706 34392695 + 0 NA promoter-TSS (ENSMUSG00000083522.1) processed_pseudogene-promoter-TSS (ENSMUSG00000083522.1) -203 ENSMUSG00000083522.1 ENSMUSG00000083522 ENSMUST00000121290 Gm15321 processed_pseudogene Interval_172894 chrX 52949882 52950721 + 0 NA intron (ENSMUSG00000025626.16, intron 7 of 8) protein_coding-intron (ENSMUSG00000025626.16, intron 9 of 10) 25730 ENSMUSG00000025626.16 ENSMUSG00000025626 ENSMUST00000179014 Phf6 protein_coding Interval_41547 chr12 116197528 116197769 + 0 NA Intergenic Intergenic 24335 ENSMUSG00000065685.1 ENSMUSG00000065685 ENSMUST00000083751 Gm23732 snRNA Interval_146727 chr7 49758754 49759719 + 0 NA promoter-TSS (ENSMUSG00000039745.8) protein_coding-promoter-TSS (ENSMUSG00000039745.8) 121 ENSMUSG00000039745.8 ENSMUSG00000039745 ENSMUST00000207895 Htatip2 protein_coding Interval_50370 chr14 12134838 12135082 + 0 NA intron (ENSMUSG00000021745.14, intron 8 of 29) protein_coding-intron (ENSMUSG00000021745.14, intron 8 of 29) 17624 ENSMUSG00000114246.1 ENSMUSG00000114246 ENSMUST00000225204 Gm48603 TEC Interval_119749 chr4 139659554 139659900 + 0 NA exon (ENSMUSG00000028738.14, exon 3 of 6) protein_coding-exon (ENSMUSG00000028738.14, exon 3 of 6) 6178 ENSMUSG00000028738.14 ENSMUSG00000028738 ENSMUST00000166773 Tas1r2 protein_coding Interval_61209 chr15 79980988 79982083 + 0 NA Intergenic Intergenic 17491 ENSMUSG00000099222.1 ENSMUSG00000099222 ENSMUST00000183847 Mir7213 miRNA Interval_145275 chr7 31097726 31099813 + 0 NA TTS (ENSMUSG00000001249.14) protein_coding-TTS (ENSMUSG00000001249.14) 3745 ENSMUSG00000001249.14 ENSMUSG00000001249 ENSMUST00000168623 Hpn protein_coding Interval_147463 chr7 67482232 67483003 + 0 NA Intergenic Intergenic -38684 ENSMUSG00000109329.1 ENSMUSG00000109329 ENSMUST00000208755 Gm33926 lincRNA Interval_98550 chr2 153161043 153162260 + 0 NA intron (ENSMUSG00000068040.10, intron 1 of 8) protein_coding-intron (ENSMUSG00000068040.10, intron 1 of 17) 6638 ENSMUSG00000089499.1 ENSMUSG00000089499 ENSMUST00000158874 Gm25643 snRNA Interval_124519 chr5 49994280 49994516 + 0 NA intron (ENSMUSG00000029090.12, intron 3 of 4) protein_coding-intron (ENSMUSG00000029090.12, intron 10 of 18) -49840 ENSMUSG00000104634.1 ENSMUSG00000104634 ENSMUST00000198627 Gm42461 TEC Interval_124596 chr5 52145289 52146350 + 0 NA Intergenic Intergenic -3246 ENSMUSG00000106648.1 ENSMUSG00000106648 ENSMUST00000199653 Gm43176 TEC Interval_129439 chr5 120169768 120170086 + 0 NA promoter-TSS (ENSMUSG00000029594.12) protein_coding-promoter-TSS (ENSMUSG00000029594.12) -5798 ENSMUSG00000029594.12 ENSMUSG00000029594 ENSMUST00000202788 Rbm19 protein_coding Interval_68491 chr16 78197634 78199239 + 0 NA Intergenic Intergenic -41822 ENSMUSG00000077451.1 ENSMUSG00000077451 ENSMUST00000104263 Gm25916 snoRNA Interval_47539 chr13 87247731 87248245 + 0 NA Intergenic Intergenic -13394 ENSMUSG00000114856.1 ENSMUSG00000114856 ENSMUST00000224195 Gm47642 processed_pseudogene Interval_110126 chr3 153548983 153549506 + 0 NA intron (ENSMUSG00000052544.9, intron 1 of 4) protein_coding-intron (ENSMUSG00000052544.9, intron 1 of 2) -39502 ENSMUSG00000052544.9 ENSMUSG00000052544 ENSMUST00000198775 St6galnac3 protein_coding Interval_112066 chr4 33970308 33971592 + 0 NA Intergenic Intergenic -35356 ENSMUSG00000089414.1 ENSMUSG00000089414 ENSMUST00000158789 Gm22010 snoRNA Interval_171804 chr9 121300792 121301416 + 0 NA intron (ENSMUSG00000032536.12, intron 1 of 1) protein_coding-intron (ENSMUSG00000032536.12, intron 1 of 1) 3592 ENSMUSG00000032536.12 ENSMUSG00000032536 ENSMUST00000209446 Trak1 protein_coding Interval_30620 chr11 95513346 95515612 + 0 NA promoter-TSS (ENSMUSG00000046719.7) protein_coding-promoter-TSS (ENSMUSG00000046719.7) 91 ENSMUSG00000046719.7 ENSMUSG00000046719 ENSMUST00000058866 Nxph3 protein_coding Interval_125108 chr5 64541728 64542859 + 0 NA Intergenic Intergenic -15890 ENSMUSG00000106566.1 ENSMUSG00000106566 ENSMUST00000196532 Gm43836 TEC Interval_31380 chr11 100346528 100346964 + 0 NA TTS (ENSMUSG00000006930.15) protein_coding-TTS (ENSMUSG00000006930.15) 4143 ENSMUSG00000092509.1 ENSMUSG00000092509 ENSMUST00000173304 Gm20394 processed_transcript Interval_125041 chr5 64047729 64049194 + 0 NA exon (ENSMUSG00000106219.1, exon 3 of 3) lincRNA-exon (ENSMUSG00000106219.1, exon 3 of 3) 3483 ENSMUSG00000106219.1 ENSMUSG00000106219 ENSMUST00000198687 5830416I19Rik lincRNA Interval_76736 chr17 83750067 83751266 + 0 NA intron (ENSMUSG00000055817.18, intron 2 of 2) protein_coding-intron (ENSMUSG00000055817.18, intron 4 of 16) 21502 ENSMUSG00000055817.18 ENSMUSG00000055817 ENSMUST00000175920 Mta3 protein_coding Interval_13300 chr10 14332476 14333000 + 0 NA intron (ENSMUSG00000112225.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000112225.1, intron 1 of 1) 5327 ENSMUSG00000112225.1 ENSMUSG00000112225 ENSMUST00000218527 Gm48854 lincRNA Interval_5462 chr1 89029250 89029781 + 0 NA Intergenic Intergenic 13402 ENSMUSG00000099378.1 ENSMUSG00000099378 ENSMUST00000186180 1700067G17Rik lincRNA Interval_110229 chr3 154630877 154632520 + 0 NA Intergenic Intergenic 15814 ENSMUSG00000028199.18 ENSMUSG00000028199 ENSMUST00000195292 Cryz protein_coding Interval_85305 chr19 24530982 24531314 + 0 NA intron (ENSMUSG00000024867.14, intron 1 of 3) protein_coding-intron (ENSMUSG00000024867.14, intron 1 of 14) 24690 ENSMUSG00000024867.14 ENSMUSG00000024867 ENSMUST00000145829 Pip5k1b protein_coding Interval_18902 chr10 92980342 92980605 + 0 NA intron (ENSMUSG00000020014.17, intron 28 of 67) protein_coding-intron (ENSMUSG00000020014.17, intron 28 of 66) 52489 ENSMUSG00000020014.17 ENSMUSG00000020014 ENSMUST00000171781 Cfap54 protein_coding Interval_43120 chr13 24337945 24338299 + 0 NA promoter-TSS (ENSMUSG00000084788.2) antisense-promoter-TSS (ENSMUSG00000084788.2) -9082 ENSMUSG00000118631.1 ENSMUSG00000118631 ENSMUST00000239334 AL590864.1 antisense Interval_167549 chr9 70395670 70396024 + 0 NA exon (ENSMUSG00000032220.10, exon 27 of 28) protein_coding-exon (ENSMUSG00000032220.10, exon 27 of 28) 9906 ENSMUSG00000093763.1 ENSMUSG00000093763 ENSMUST00000176002 Mir5626 miRNA Interval_165736 chr9 52012554 52013911 + 0 NA Intergenic Intergenic -9951 ENSMUSG00000098076.1 ENSMUSG00000098076 ENSMUST00000182467 Gm6981 processed_pseudogene Interval_75944 chr17 73343079 73343881 + 0 NA intron (ENSMUSG00000043705.7, intron 8 of 22) protein_coding-intron (ENSMUSG00000043705.7, intron 8 of 22) 57386 ENSMUSG00000043705.7 ENSMUSG00000043705 ENSMUST00000233432 Capn13 protein_coding Interval_171851 chr9 121769825 121770729 + 0 NA exon (ENSMUSG00000013419.7, exon 6 of 6) protein_coding-exon (ENSMUSG00000013419.7, exon 6 of 6) 6260 ENSMUSG00000013419.7 ENSMUSG00000013419 ENSMUST00000213743 Zfp651 protein_coding Interval_148207 chr7 79819749 79820234 + 0 NA Intergenic Intergenic 5508 ENSMUSG00000039062.15 ENSMUSG00000039062 ENSMUST00000149164 Anpep protein_coding Interval_112113 chr4 34782676 34783115 + 0 NA Intergenic Intergenic -4540 ENSMUSG00000028295.14 ENSMUSG00000028295 ENSMUST00000131295 Smim8 protein_coding Interval_2226 chr1 37200409 37201192 + 0 NA Intergenic Intergenic -17579 ENSMUSG00000026114.14 ENSMUSG00000026114 ENSMUST00000027288 Cnga3 protein_coding Interval_92601 chr2 61213866 61214342 + 0 NA Intergenic Intergenic -10688 ENSMUSG00000083197.1 ENSMUSG00000083197 ENSMUST00000120675 Gm13581 processed_pseudogene Interval_72412 chr17 29669615 29670029 + 0 NA intron (ENSMUSG00000024019.18, intron 2 of 9) protein_coding-intron (ENSMUSG00000024019.18, intron 2 of 23) 9208 ENSMUSG00000024019.18 ENSMUSG00000024019 ENSMUST00000234666 Cmtr1 protein_coding Interval_111275 chr4 16714810 16715382 + 0 NA exon (ENSMUSG00000083229.1, exon 1 of 1) processed_pseudogene-exon (ENSMUSG00000083229.1, exon 1 of 1) 152 ENSMUSG00000083229.1 ENSMUSG00000083229 ENSMUST00000119678 Gm11862 processed_pseudogene Interval_101793 chr3 9586205 9586530 + 0 NA intron (ENSMUSG00000040209.12, intron 1 of 8) protein_coding-intron (ENSMUSG00000040209.12, intron 1 of 8) -21068 ENSMUSG00000040209.12 ENSMUSG00000040209 ENSMUST00000192832 Zfp704 protein_coding Interval_11356 chr1 181178588 181178825 + 0 NA intron (ENSMUSG00000038733.14, intron 13 of 13) protein_coding-intron (ENSMUSG00000038733.14, intron 13 of 13) 33295 ENSMUSG00000038733.14 ENSMUSG00000038733 ENSMUST00000161531 Wdr26 protein_coding Interval_7703 chr1 133163652 133164965 + 0 NA promoter-TSS (ENSMUSG00000041757.17) protein_coding-promoter-TSS (ENSMUSG00000041757.17) -32526 ENSMUSG00000102425.1 ENSMUSG00000102425 ENSMUST00000193049 Gm26616 TEC Interval_154313 chr8 14333665 14334428 + 0 NA intron (ENSMUSG00000047495.15, intron 2 of 14) protein_coding-intron (ENSMUSG00000047495.15, intron 2 of 14) -16132 ENSMUSG00000106670.1 ENSMUSG00000106670 ENSMUST00000199602 Gm44347 miRNA Interval_139654 chr6 105662664 105663164 + 0 NA Intergenic Intergenic 14667 ENSMUSG00000085067.2 ENSMUSG00000085067 ENSMUST00000142962 Gm15631 lincRNA Interval_149732 chr7 100998230 100998983 + 0 NA TTS (ENSMUSG00000032860.5) protein_coding-TTS (ENSMUSG00000032860.5) 5281 ENSMUSG00000032860.5 ENSMUSG00000032860 ENSMUST00000208258 P2ry2 protein_coding Interval_73242 chr17 35736223 35736775 + 0 NA Intergenic Intergenic 3307 ENSMUSG00000092219.1 ENSMUSG00000092219 ENSMUST00000173840 Gm20443 lincRNA Interval_173652 chrX 101499965 101500409 + 0 NA Intergenic Intergenic -18798 ENSMUSG00000081674.1 ENSMUSG00000081674 ENSMUST00000120403 Gm6184 processed_pseudogene Interval_42578 chr13 15758829 15760021 + 0 NA Intergenic Intergenic 10695 ENSMUSG00000113309.1 ENSMUSG00000113309 ENSMUST00000222341 Gm48408 TEC Interval_153445 chr7 144846068 144846755 + 0 NA promoter-TSS (ENSMUSG00000050917.5) protein_coding-promoter-TSS (ENSMUSG00000050917.5) -956 ENSMUSG00000050917.5 ENSMUSG00000050917 ENSMUST00000060336 Fgf4 protein_coding Interval_156657 chr8 56537488 56537741 + 0 NA exon (ENSMUSG00000038215.15, exon 1 of 1) protein_coding-exon (ENSMUSG00000038215.15, exon 1 of 1) -3039 ENSMUSG00000038215.15 ENSMUSG00000038215 ENSMUST00000126830 Cep44 protein_coding Interval_169320 chr9 96374082 96374489 + 0 NA Intergenic Intergenic -30704 ENSMUSG00000032412.8 ENSMUSG00000032412 ENSMUST00000187341 Atp1b3 protein_coding Interval_10815 chr1 175586618 175586862 + 0 NA Intergenic Intergenic 12431 ENSMUSG00000103079.1 ENSMUSG00000103079 ENSMUST00000195831 Gm36307 lincRNA Interval_159685 chr8 97181879 97183167 + 0 NA Intergenic Intergenic -18167 ENSMUSG00000110567.1 ENSMUSG00000110567 ENSMUST00000212293 Gm45703 lincRNA Interval_150646 chr7 113060751 113061879 + 0 NA Intergenic Intergenic -58383 ENSMUSG00000088671.1 ENSMUSG00000088671 ENSMUST00000158046 Gm23662 rRNA Interval_92623 chr2 61642981 61643595 + 0 NA promoter-TSS (ENSMUSG00000064289.15) protein_coding-promoter-TSS (ENSMUSG00000064289.15) -543 ENSMUSG00000064289.15 ENSMUSG00000064289 ENSMUST00000154693 Tank protein_coding Interval_75280 chr17 65663501 65664493 + 0 NA intron (ENSMUSG00000056515.9, intron 6 of 6) protein_coding-intron (ENSMUSG00000056515.9, intron 6 of 6) -2419 ENSMUSG00000117114.1 ENSMUSG00000117114 ENSMUST00000233942 Gm49867 processed_pseudogene Interval_90803 chr2 32689296 32689688 + 0 NA intron (ENSMUSG00000009566.12, intron 4 of 12) protein_coding-intron (ENSMUSG00000009566.12, intron 4 of 14) -1655 ENSMUSG00000009566.12 ENSMUSG00000009566 ENSMUST00000143743 Fpgs protein_coding Interval_58933 chr15 40162053 40163200 + 0 NA promoter-TSS (ENSMUSG00000115367.1) lincRNA-promoter-TSS (ENSMUSG00000115367.1) 19 ENSMUSG00000115367.1 ENSMUSG00000115367 ENSMUST00000228503 Gm33301 lincRNA Interval_140288 chr6 116182287 116182504 + 0 NA intron (ENSMUSG00000030126.17, intron 1 of 5) protein_coding-intron (ENSMUSG00000030126.17, intron 1 of 5) 8658 ENSMUSG00000101878.1 ENSMUSG00000101878 ENSMUST00000173192 Gm8203 processed_pseudogene Interval_50002 chr13 119483349 119484554 + 0 NA intron (ENSMUSG00000062822.8, intron 11 of 12) protein_coding-intron (ENSMUSG00000062822.8, intron 11 of 12) -4088 ENSMUSG00000074634.12 ENSMUSG00000074634 ENSMUST00000178948 Tmem267 protein_coding Interval_15506 chr10 49940573 49941013 + 0 NA Intergenic Intergenic 15188 ENSMUSG00000110973.1 ENSMUSG00000110973 ENSMUST00000213795 Gm48130 processed_pseudogene Interval_125297 chr5 66026209 66027808 + 0 NA TTS (ENSMUSG00000070780.11) protein_coding-TTS (ENSMUSG00000070780.11) -25675 ENSMUSG00000054598.13 ENSMUSG00000054598 ENSMUST00000201302 9130230L23Rik protein_coding Interval_52866 chr14 51229064 51229736 + 0 NA Intergenic Intergenic 26009 ENSMUSG00000050766.2 ENSMUSG00000050766 ENSMUST00000049559 Ear14 protein_coding Interval_125644 chr5 72998822 72999893 + 0 NA Intergenic Intergenic -7546 ENSMUSG00000029219.10 ENSMUSG00000029219 ENSMUST00000201304 Slc10a4 protein_coding Interval_137321 chr6 71312444 71313012 + 0 NA intron (ENSMUSG00000055027.17, intron 1 of 1) protein_coding-intron (ENSMUSG00000055027.17, intron 1 of 9) -10060 ENSMUSG00000053044.8 ENSMUSG00000053044 ENSMUST00000065248 Cd8b1 protein_coding Interval_16994 chr10 70325137 70326358 + 0 NA Intergenic Intergenic -12555 ENSMUSG00000112676.1 ENSMUSG00000112676 ENSMUST00000219977 Gm20108 processed_pseudogene Interval_15943 chr10 59537688 59538046 + 0 NA intron (ENSMUSG00000009647.13, intron 3 of 3) protein_coding-intron (ENSMUSG00000009647.13, intron 1 of 7) -78197 ENSMUSG00000071280.2 ENSMUSG00000071280 ENSMUST00000238281 Gm10322 antisense Interval_105467 chr3 86822756 86823999 + 0 NA intron (ENSMUSG00000028078.14, intron 6 of 17) protein_coding-intron (ENSMUSG00000028078.14, intron 5 of 15) -41115 ENSMUSG00000104074.1 ENSMUSG00000104074 ENSMUST00000195159 Gm37025 processed_pseudogene Interval_50911 chr14 20724020 20724507 + 0 NA TTS (ENSMUSG00000021819.11) protein_coding-TTS (ENSMUSG00000021819.11) 2652 ENSMUSG00000021819.11 ENSMUSG00000021819 ENSMUST00000225911 Zswim8 protein_coding Interval_48203 chr13 97160888 97161096 + 0 NA exon (ENSMUSG00000021666.16, exon 1 of 10) protein_coding-exon (ENSMUSG00000021666.16, exon 1 of 10) 22984 ENSMUSG00000021666.16 ENSMUSG00000021666 ENSMUST00000159321 Gfm2 protein_coding Interval_110330 chr3 156973762 156974029 + 0 NA intron (ENSMUSG00000040037.13, intron 2 of 2) protein_coding-intron (ENSMUSG00000040037.13, intron 2 of 6) -26522 ENSMUSG00000106018.1 ENSMUSG00000106018 ENSMUST00000198749 Gm43527 TEC Interval_51476 chr14 27954073 27954869 + 0 NA intron (ENSMUSG00000040640.11, intron 6 of 7) protein_coding-intron (ENSMUSG00000040640.11, intron 6 of 15) -78254 ENSMUSG00000109849.1 ENSMUSG00000109849 ENSMUST00000211470 Gm45645 antisense Interval_69281 chr16 91884140 91886150 + 0 NA intron (ENSMUSG00000022957.20, intron 1 of 3) protein_coding-intron (ENSMUSG00000022957.20, intron 29 of 39) -18918 ENSMUSG00000022957.20 ENSMUSG00000022957 ENSMUST00000137575 Itsn1 protein_coding Interval_135205 chr6 37478773 37478976 + 0 NA Intergenic Intergenic -60807 ENSMUSG00000038641.12 ENSMUSG00000038641 ENSMUST00000123648 Akr1d1 protein_coding Interval_140610 chr6 120079353 120080666 + 0 NA Intergenic Intergenic -13341 ENSMUSG00000041377.12 ENSMUSG00000041377 ENSMUST00000035244 Ninj2 protein_coding Interval_31246 chr11 99110452 99111316 + 0 NA Intergenic Intergenic -35543 ENSMUSG00000017607.9 ENSMUSG00000017607 ENSMUST00000123303 Tns4 protein_coding Interval_144278 chr7 24228327 24229140 + 0 NA exon (ENSMUSG00000074283.5, exon 3 of 3) protein_coding-exon (ENSMUSG00000074283.5, exon 3 of 3) 8492 ENSMUSG00000074283.5 ENSMUSG00000074283 ENSMUST00000037448 Zfp109 protein_coding Interval_90770 chr2 32507211 32510213 + 0 NA Intergenic Intergenic -16319 ENSMUSG00000085017.1 ENSMUSG00000085017 ENSMUST00000150621 Gm13412 lincRNA Interval_143316 chr7 5125492 5126399 + 0 NA promoter-TSS (ENSMUSG00000083649.5) protein_coding-promoter-TSS (ENSMUSG00000083649.5) 5 ENSMUSG00000083649.5 ENSMUSG00000083649 ENSMUST00000147835 Rasl2-9 protein_coding Interval_116959 chr4 118470763 118471071 + 0 NA TTS (ENSMUSG00000033191.14) protein_coding-TTS (ENSMUSG00000033191.14) -13422 ENSMUSG00000006389.13 ENSMUSG00000006389 ENSMUST00000216417 Mpl protein_coding Interval_65501 chr16 22843936 22845202 + 0 NA promoter-TSS (ENSMUSG00000004462.7) protein_coding-promoter-TSS (ENSMUSG00000004462.7) 12973 ENSMUSG00000004462.7 ENSMUSG00000004462 ENSMUST00000231513 Tbccd1 protein_coding Interval_8378 chr1 138537634 138537911 + 0 NA intron (ENSMUSG00000026393.10, intron 3 of 6) protein_coding-intron (ENSMUSG00000026393.10, intron 3 of 7) 16936 ENSMUSG00000102651.1 ENSMUSG00000102651 ENSMUST00000194804 Gm37080 TEC Interval_106641 chr3 98021569 98021907 + 0 NA intron (ENSMUSG00000027878.11, intron 1 of 7) protein_coding-intron (ENSMUSG00000027878.11, intron 1 of 33) 8211 ENSMUSG00000027878.11 ENSMUSG00000027878 ENSMUST00000079812 Notch2 protein_coding Interval_164506 chr9 37530048 37531579 + 0 NA promoter-TSS (ENSMUSG00000001946.14) protein_coding-promoter-TSS (ENSMUSG00000001946.14) -3825 ENSMUSG00000001946.14 ENSMUSG00000001946 ENSMUST00000131832 Esam protein_coding Interval_168950 chr9 89508069 89508759 + 0 NA Intergenic Intergenic 51970 ENSMUSG00000111806.1 ENSMUSG00000111806 ENSMUST00000217127 Gm47403 lincRNA Interval_87928 chr19 57161032 57161968 + 0 NA intron (ENSMUSG00000025085.16, intron 2 of 20) protein_coding-intron (ENSMUSG00000025085.16, intron 2 of 25) -112460 ENSMUSG00000117684.1 ENSMUSG00000117684 ENSMUST00000237596 4930449E18Rik antisense Interval_20561 chr10 119039910 119040421 + 0 NA intron (ENSMUSG00000112778.1, intron 3 of 3) lincRNA-intron (ENSMUSG00000112778.1, intron 3 of 3) 10334 ENSMUSG00000112778.1 ENSMUSG00000112778 ENSMUST00000220074 Gm33677 lincRNA Interval_30340 chr11 93706781 93707945 + 0 NA Intergenic Intergenic 12281 ENSMUSG00000080872.1 ENSMUSG00000080872 ENSMUST00000122414 Gm11506 processed_pseudogene Interval_115295 chr4 95475896 95476693 + 0 NA intron (ENSMUSG00000084939.2, intron 1 of 2) processed_transcript-intron (ENSMUSG00000084939.2, intron 1 of 2) -7662 ENSMUSG00000085835.1 ENSMUSG00000085835 ENSMUST00000155789 Gm12707 processed_transcript Interval_6780 chr1 119431272 119431494 + 0 NA Intergenic Intergenic -9135 ENSMUSG00000037035.5 ENSMUSG00000037035 ENSMUST00000038765 Inhbb protein_coding Interval_54379 chr14 68065600 68068018 + 0 NA Intergenic Intergenic -15479 ENSMUSG00000114621.1 ENSMUSG00000114621 ENSMUST00000223853 Gm31107 lincRNA Interval_140130 chr6 114662393 114663120 + 0 NA intron (ENSMUSG00000030314.16, intron 1 of 3) protein_coding-intron (ENSMUSG00000030314.16, intron 1 of 18) -20528 ENSMUSG00000030314.16 ENSMUSG00000030314 ENSMUST00000182934 Atg7 protein_coding Interval_2465 chr1 39548560 39549052 + 0 NA promoter-TSS (ENSMUSG00000077704.1) snoRNA-promoter-TSS (ENSMUSG00000077704.1) 48 ENSMUSG00000077704.1 ENSMUSG00000077704 ENSMUST00000104516 Snord89 snoRNA Interval_135015 chr6 34598152 34598975 + 0 NA promoter-TSS (ENSMUSG00000029761.16) protein_coding-promoter-TSS (ENSMUSG00000029761.16) 55331 ENSMUSG00000085382.1 ENSMUSG00000085382 ENSMUST00000137136 Gm13861 lincRNA Interval_89024 chr2 14711768 14712059 + 0 NA intron (ENSMUSG00000104106.1, intron 2 of 2) protein_coding-intron (ENSMUSG00000057914.15, intron 2 of 13) 4248 ENSMUSG00000103885.1 ENSMUSG00000103885 ENSMUST00000195253 Gm37006 TEC Interval_123374 chr5 31987733 31988963 + 0 NA intron (ENSMUSG00000052139.18, intron 5 of 6) protein_coding-intron (ENSMUSG00000052139.18, intron 9 of 13) 22515 ENSMUSG00000106894.1 ENSMUSG00000106894 ENSMUST00000201542 Gm17130 antisense Interval_55216 chr14 79397311 79398342 + 0 NA promoter-TSS (ENSMUSG00000022022.3) protein_coding-promoter-TSS (ENSMUSG00000022022.3) -160 ENSMUSG00000022022.3 ENSMUSG00000022022 ENSMUST00000227610 Mtrf1 protein_coding Interval_165714 chr9 51334787 51336534 + 0 NA Intergenic Intergenic -6736 ENSMUSG00000036027.13 ENSMUSG00000036027 ENSMUST00000238450 1810046K07Rik protein_coding Interval_59379 chr15 51985368 51985631 + 0 NA intron (ENSMUSG00000022314.10, intron 1 of 13) protein_coding-intron (ENSMUSG00000022314.10, intron 1 of 13) 6011 ENSMUSG00000022314.10 ENSMUSG00000022314 ENSMUST00000226529 Rad21 protein_coding Interval_129605 chr5 121270609 121271737 + 0 NA intron (ENSMUSG00000042744.16, intron 7 of 75) protein_coding-intron (ENSMUSG00000042744.16, intron 7 of 75) -15057 ENSMUSG00000042744.16 ENSMUSG00000042744 ENSMUST00000130655 Hectd4 protein_coding Interval_137709 chr6 80923258 80923456 + 0 NA Intergenic Intergenic 96219 ENSMUSG00000108040.1 ENSMUSG00000108040 ENSMUST00000204868 Gm43900 TEC Interval_103407 chr3 41343583 41343871 + 0 NA Intergenic Intergenic -10420 ENSMUSG00000105297.1 ENSMUSG00000105297 ENSMUST00000196142 1700052H01Rik lincRNA Interval_75624 chr17 69448539 69448741 + 0 NA intron (ENSMUSG00000091636.2, intron 1 of 1) protein_coding-intron (ENSMUSG00000091636.2, intron 1 of 1) 8806 ENSMUSG00000091636.2 ENSMUSG00000091636 ENSMUST00000233983 Akain1 protein_coding Interval_37895 chr12 72846241 72846453 + 0 NA Intergenic Intergenic 28635 ENSMUSG00000113779.1 ENSMUSG00000113779 ENSMUST00000222961 Gm33785 lincRNA Interval_21941 chr11 5332022 5332494 + 0 NA intron (ENSMUSG00000041961.14, intron 3 of 8) protein_coding-intron (ENSMUSG00000041961.14, intron 2 of 8) 49482 ENSMUSG00000041961.14 ENSMUSG00000041961 ENSMUST00000143746 Znrf3 protein_coding Interval_53236 chr14 55490501 55492309 + 0 NA intron (ENSMUSG00000022211.9, intron 2 of 39) protein_coding-intron (ENSMUSG00000022211.9, intron 1 of 39) 754 ENSMUSG00000022211.9 ENSMUSG00000022211 ENSMUST00000226653 Carmil3 protein_coding Interval_11212 chr1 180210734 180211496 + 0 NA TTS (ENSMUSG00000104520.1) lincRNA-TTS (ENSMUSG00000104520.1) 1286 ENSMUSG00000104520.1 ENSMUSG00000104520 ENSMUST00000193705 Gm37336 lincRNA Interval_139426 chr6 100088657 100089286 + 0 NA Intergenic Intergenic 54843 ENSMUSG00000107558.1 ENSMUSG00000107558 ENSMUST00000204605 2010109P13Rik TEC Interval_40563 chr12 105757520 105758539 + 0 NA intron (ENSMUSG00000041323.6, intron 12 of 17) protein_coding-intron (ENSMUSG00000041323.6, intron 12 of 17) 39173 ENSMUSG00000041323.6 ENSMUSG00000041323 ENSMUST00000220702 Ak7 protein_coding Interval_77259 chr17 87625558 87625774 + 0 NA Intergenic Intergenic -10313 ENSMUSG00000045394.9 ENSMUSG00000045394 ENSMUST00000234623 Epcam protein_coding Interval_143067 chr6 149018405 149019112 + 0 NA intron (ENSMUSG00000030313.15, intron 12 of 13) protein_coding-intron (ENSMUSG00000030313.15, intron 12 of 20) 14843 ENSMUSG00000082633.1 ENSMUSG00000082633 ENSMUST00000117470 Gm15779 processed_pseudogene Interval_91516 chr2 40332290 40333133 + 0 NA Intergenic Intergenic 34194 ENSMUSG00000088512.1 ENSMUSG00000088512 ENSMUST00000157887 Gm24467 snoRNA Interval_147659 chr7 70808268 70808489 + 0 NA Intergenic Intergenic 55962 ENSMUSG00000089401.1 ENSMUSG00000089401 ENSMUST00000158776 Gm24880 rRNA Interval_100772 chr2 172465870 172466635 + 0 NA intron (ENSMUSG00000027502.11, intron 2 of 4) protein_coding-intron (ENSMUSG00000027502.11, intron 6 of 8) -6268 ENSMUSG00000027505.2 ENSMUSG00000027505 ENSMUST00000029007 Fam209 protein_coding Interval_89106 chr2 16450958 16451500 + 0 NA intron (ENSMUSG00000026748.13, intron 1 of 12) protein_coding-intron (ENSMUSG00000026748.13, intron 1 of 13) -187467 ENSMUSG00000026748.13 ENSMUSG00000026748 ENSMUST00000126173 Plxdc2 protein_coding Interval_38738 chr12 81744344 81746342 + 0 NA intron (ENSMUSG00000042724.8, intron 2 of 7) protein_coding-intron (ENSMUSG00000042724.8, intron 2 of 10) -25291 ENSMUSG00000113184.1 ENSMUSG00000113184 ENSMUST00000221438 Gm49654 lincRNA Interval_138551 chr6 89235584 89236636 + 0 NA Intergenic Intergenic 13492 ENSMUSG00000087799.1 ENSMUSG00000087799 ENSMUST00000157174 Gm25961 rRNA Interval_126791 chr5 92954262 92955606 + 0 NA intron (ENSMUSG00000029381.16, intron 7 of 9) protein_coding-intron (ENSMUSG00000029381.16, intron 7 of 9) -48897 ENSMUSG00000106930.1 ENSMUSG00000106930 ENSMUST00000200896 Gm6450 processed_pseudogene Interval_73930 chr17 45543823 45545935 + 0 NA exon (ENSMUSG00000096847.2, exon 3 of 3) protein_coding-exon (ENSMUSG00000096847.2, exon 3 of 3) 4798 ENSMUSG00000096847.2 ENSMUSG00000096847 ENSMUST00000180252 Tmem151b protein_coding Interval_49234 chr13 109685131 109686343 + 0 NA promoter-TSS (ENSMUSG00000021699.17) protein_coding-promoter-TSS (ENSMUSG00000021699.17) -218072 ENSMUSG00000084651.1 ENSMUSG00000084651 ENSMUST00000122702 Mir1904 miRNA Interval_133415 chr6 4892039 4893713 + 0 NA TTS (ENSMUSG00000083041.2) processed_pseudogene-TTS (ENSMUSG00000083041.2) 902 ENSMUSG00000083041.2 ENSMUSG00000083041 ENSMUST00000121071 Gmfg-ps processed_pseudogene Interval_122702 chr5 24757363 24758496 + 0 NA promoter-TSS (ENSMUSG00000038135.4) protein_coding-promoter-TSS (ENSMUSG00000038135.4) -6605 ENSMUSG00000038135.4 ENSMUSG00000038135 ENSMUST00000047119 Crygn protein_coding Interval_13161 chr10 12676566 12677057 + 0 NA intron (ENSMUSG00000019820.11, intron 7 of 11) protein_coding-intron (ENSMUSG00000019820.11, intron 33 of 73) 12051 ENSMUSG00000019820.11 ENSMUSG00000019820 ENSMUST00000219135 Utrn protein_coding Interval_159652 chr8 96067454 96067672 + 0 NA Intergenic Intergenic 146034 ENSMUSG00000110506.1 ENSMUSG00000110506 ENSMUST00000212919 Gm8637 processed_pseudogene Interval_95637 chr2 113287767 113287997 + 0 NA promoter-TSS (ENSMUSG00000093660.1) snRNA-promoter-TSS (ENSMUSG00000093660.1) -391 ENSMUSG00000093660.1 ENSMUSG00000093660 ENSMUST00000176208 Gm26505 snRNA Interval_36786 chr12 53981374 53983287 + 0 NA intron (ENSMUSG00000021010.9, intron 5 of 10) protein_coding-intron (ENSMUSG00000021010.9, intron 6 of 11) 97062 ENSMUSG00000099407.1 ENSMUSG00000099407 ENSMUST00000185390 1700060O08Rik antisense Interval_140978 chr6 123698940 123699186 + 0 NA Intergenic Intergenic -3607 ENSMUSG00000091620.3 ENSMUSG00000091620 ENSMUST00000233395 Vmn2r23 protein_coding Interval_34792 chr12 11224683 11224971 + 0 NA Intergenic Intergenic -2617 ENSMUSG00000103287.1 ENSMUSG00000103287 ENSMUST00000192736 1700034J04Rik TEC Interval_86339 chr19 38874484 38876045 + 0 NA intron (ENSMUSG00000048720.8, intron 2 of 10) protein_coding-intron (ENSMUSG00000048720.8, intron 2 of 12) -9978 ENSMUSG00000089545.1 ENSMUSG00000089545 ENSMUST00000158920 Gm25838 misc_RNA Interval_170041 chr9 104001885 104003255 + 0 NA promoter-TSS (ENSMUSG00000032558.19) protein_coding-promoter-TSS (ENSMUSG00000032558.19) -231 ENSMUSG00000111035.1 ENSMUSG00000111035 ENSMUST00000216588 Gm33054 lincRNA Interval_49897 chr13 117997092 117997411 + 0 NA Intergenic Intergenic -39363 ENSMUSG00000088155.1 ENSMUSG00000088155 ENSMUST00000157530 Gm26349 snoRNA Interval_104915 chr3 78979984 78980229 + 0 NA TTS (ENSMUSG00000077487.1) snoRNA-TTS (ENSMUSG00000077487.1) 184 ENSMUSG00000077487.1 ENSMUSG00000077487 ENSMUST00000104299 Gm23440 snoRNA Interval_140563 chr6 119554376 119554964 + 0 NA Intergenic Intergenic -10323 ENSMUSG00000030170.14 ENSMUSG00000030170 ENSMUST00000119369 Wnt5b protein_coding Interval_5017 chr1 84270550 84271933 + 0 NA intron (ENSMUSG00000045658.16, intron 2 of 4) protein_coding-intron (ENSMUSG00000045658.16, intron 1 of 2) 13382 ENSMUSG00000045658.16 ENSMUSG00000045658 ENSMUST00000187992 Pid1 protein_coding Interval_152127 chr7 129701441 129701665 + 0 NA intron (ENSMUSG00000108580.1, intron 3 of 3) lincRNA-intron (ENSMUSG00000108580.1, intron 3 of 3) 34148 ENSMUSG00000108481.1 ENSMUSG00000108481 ENSMUST00000205836 Gm33248 sense_intronic Interval_8410 chr1 138962889 138964409 + 0 NA promoter-TSS (ENSMUSG00000056268.15) protein_coding-promoter-TSS (ENSMUSG00000056268.15) 214 ENSMUSG00000056268.15 ENSMUSG00000056268 ENSMUST00000199634 Dennd1b protein_coding Interval_60303 chr15 72660330 72660641 + 0 NA intron (ENSMUSG00000047921.17, intron 20 of 21) protein_coding-intron (ENSMUSG00000047921.17, intron 20 of 21) 60902 ENSMUSG00000088364.2 ENSMUSG00000088364 ENSMUST00000157739 Gm28020 snRNA Interval_165033 chr9 44054196 44054453 + 0 NA Intergenic Intergenic 8652 ENSMUSG00000032011.5 ENSMUSG00000032011 ENSMUST00000213733 Thy1 protein_coding Interval_46666 chr13 68514553 68515372 + 0 NA Intergenic Intergenic -23573 ENSMUSG00000113394.1 ENSMUSG00000113394 ENSMUST00000221886 Gm48436 lincRNA Interval_76675 chr17 83386744 83387559 + 0 NA intron (ENSMUSG00000032624.16, intron 1 of 22) protein_coding-intron (ENSMUSG00000032624.16, intron 1 of 20) -69150 ENSMUSG00000032624.16 ENSMUSG00000032624 ENSMUST00000235121 Eml4 protein_coding Interval_66935 chr16 38615920 38616296 + 0 NA intron (ENSMUSG00000022799.4, intron 8 of 11) protein_coding-intron (ENSMUSG00000022799.4, intron 8 of 11) -42808 ENSMUSG00000091238.1 ENSMUSG00000091238 ENSMUST00000168897 Gm17103 antisense Interval_48743 chr13 102678131 102678795 + 0 NA Intergenic Intergenic -15148 ENSMUSG00000021624.9 ENSMUSG00000021624 ENSMUST00000172138 Cd180 protein_coding Interval_94620 chr2 92723924 92724193 + 0 NA Intergenic Intergenic -18172 ENSMUSG00000085976.1 ENSMUSG00000085976 ENSMUST00000152230 Gm13816 lincRNA Interval_4576 chr1 75208705 75211386 + 0 NA promoter-TSS (ENSMUSG00000026201.12) protein_coding-promoter-TSS (ENSMUSG00000026201.12) -317 ENSMUSG00000099204.2 ENSMUSG00000099204 ENSMUST00000184844 Gm27943 miRNA Interval_161725 chr8 122352468 122352713 + 0 NA intron (ENSMUSG00000092329.1, intron 1 of 15) protein_coding-intron (ENSMUSG00000092329.1, intron 1 of 15) 8156 ENSMUSG00000039079.1 ENSMUSG00000039079 ENSMUST00000044123 Trhr2 protein_coding Interval_81204 chr18 56389699 56389965 + 0 NA promoter-TSS (ENSMUSG00000117688.1) processed_pseudogene-promoter-TSS (ENSMUSG00000117688.1) -311 ENSMUSG00000117688.1 ENSMUSG00000117688 ENSMUST00000235993 Gm8629 processed_pseudogene Interval_10062 chr1 165523865 165524138 + 0 NA intron (ENSMUSG00000026567.16, intron 12 of 31) protein_coding-intron (ENSMUSG00000026567.16, intron 12 of 33) 14090 ENSMUSG00000026567.16 ENSMUSG00000026567 ENSMUST00000124037 Adcy10 protein_coding Interval_92260 chr2 57387929 57388453 + 0 NA Intergenic Intergenic 37518 ENSMUSG00000084338.5 ENSMUSG00000084338 ENSMUST00000121893 Gm13531 processed_pseudogene Interval_169185 chr9 95380756 95381357 + 0 NA Intergenic Intergenic 25666 ENSMUSG00000033350.7 ENSMUSG00000033350 ENSMUST00000036267 Chst2 protein_coding Interval_121935 chr5 10257473 10258077 + 0 NA intron (ENSMUSG00000105157.1, intron 1 of 3) lincRNA-intron (ENSMUSG00000105157.1, intron 1 of 3) 8683 ENSMUSG00000105157.1 ENSMUSG00000105157 ENSMUST00000196240 Gm31831 lincRNA Interval_99792 chr2 164938211 164939378 + 0 NA Intergenic Intergenic -15592 ENSMUSG00000017737.2 ENSMUSG00000017737 ENSMUST00000144917 Mmp9 protein_coding Interval_19340 chr10 97178608 97178851 + 0 NA Intergenic Intergenic 21641 ENSMUSG00000112892.1 ENSMUSG00000112892 ENSMUST00000220383 Gm8613 processed_pseudogene Interval_61949 chr15 85437297 85437644 + 0 NA intron (ENSMUSG00000016541.10, intron 9 of 11) protein_coding-intron (ENSMUSG00000016541.10, intron 9 of 11) 65757 ENSMUSG00000096607.1 ENSMUSG00000096607 ENSMUST00000178942 7530416G11Rik protein_coding Interval_161759 chr8 122585280 122586472 + 0 NA intron (ENSMUSG00000015027.11, intron 9 of 11) protein_coding-intron (ENSMUSG00000015027.11, intron 11 of 13) -10387 ENSMUSG00000006589.8 ENSMUSG00000006589 ENSMUST00000211810 Aprt protein_coding Interval_24037 chr11 29684257 29687347 + 0 NA Intergenic Intergenic 4033 ENSMUSG00000083917.1 ENSMUSG00000083917 ENSMUST00000120906 Gm12093 processed_pseudogene Interval_160310 chr8 108028760 108029074 + 0 NA intron (ENSMUSG00000038872.10, intron 2 of 4) protein_coding-intron (ENSMUSG00000038872.10, intron 1 of 15) 34358 ENSMUSG00000038872.10 ENSMUSG00000038872 ENSMUST00000043896 Zfhx3 protein_coding Interval_51520 chr14 29657160 29657391 + 0 NA intron (ENSMUSG00000021991.9, intron 2 of 37) protein_coding-intron (ENSMUSG00000021991.9, intron 2 of 37) 76120 ENSMUSG00000114570.1 ENSMUSG00000114570 ENSMUST00000225976 Gm48058 lincRNA Interval_62433 chr15 92661187 92661996 + 0 NA intron (ENSMUSG00000036218.16, intron 1 of 7) protein_coding-intron (ENSMUSG00000036218.16, intron 1 of 7) 44364 ENSMUSG00000115858.1 ENSMUSG00000115858 ENSMUST00000230757 4930588J15Rik antisense Interval_57530 chr15 12124716 12124958 + 0 NA intron (ENSMUSG00000022201.16, intron 2 of 4) protein_coding-intron (ENSMUSG00000022201.16, intron 2 of 19) 6986 ENSMUSG00000022201.16 ENSMUSG00000022201 ENSMUST00000140787 Zfr protein_coding Interval_55725 chr14 99324314 99326236 + 0 NA Intergenic Intergenic 26121 ENSMUSG00000005148.8 ENSMUSG00000005148 ENSMUST00000226784 Klf5 protein_coding Interval_131659 chr5 139118190 139118503 + 0 NA intron (ENSMUSG00000025855.13, intron 2 of 2) protein_coding-intron (ENSMUSG00000025855.13, intron 2 of 10) 31655 ENSMUSG00000025855.13 ENSMUSG00000025855 ENSMUST00000130180 Prkar1b protein_coding Interval_56400 chr14 118496553 118497326 + 0 NA intron (ENSMUSG00000032849.14, intron 28 of 29) protein_coding-intron (ENSMUSG00000032849.14, intron 29 of 30) -67133 ENSMUSG00000115075.1 ENSMUSG00000115075 ENSMUST00000227627 Gm49033 processed_pseudogene Interval_57467 chr15 11410511 11411002 + 0 NA Intergenic Intergenic -11155 ENSMUSG00000022241.6 ENSMUSG00000022241 ENSMUST00000226904 Tars protein_coding Interval_126677 chr5 91994282 91995004 + 0 NA intron (ENSMUSG00000096035.2, intron 1 of 1) protein_coding-intron (ENSMUSG00000096035.2, intron 1 of 1) 7168 ENSMUSG00000096035.2 ENSMUSG00000096035 ENSMUST00000178614 Odaph protein_coding Interval_13342 chr10 15899531 15900108 + 0 NA Intergenic Intergenic 108042 ENSMUSG00000112227.1 ENSMUSG00000112227 ENSMUST00000218833 C330004P14Rik lincRNA Interval_35229 chr12 18543533 18544911 + 0 NA Intergenic Intergenic -15393 ENSMUSG00000113604.1 ENSMUSG00000113604 ENSMUST00000222589 Gm19786 unprocessed_pseudogene Interval_58641 chr15 36759677 36761337 + 0 NA Intergenic Intergenic 36422 ENSMUSG00000022285.17 ENSMUSG00000022285 ENSMUST00000227067 Ywhaz protein_coding Interval_11004 chr1 178010229 178011242 + 0 NA intron (ENSMUSG00000091476.8, intron 2 of 21) protein_coding-intron (ENSMUSG00000091476.8, intron 2 of 7) -11996 ENSMUSG00000104097.1 ENSMUSG00000104097 ENSMUST00000191673 Gm37313 unprocessed_pseudogene Interval_34158 chr11 120963778 120966149 + 0 NA TTS (ENSMUSG00000100629.1) antisense-TTS (ENSMUSG00000100629.1) 1119 ENSMUSG00000100629.1 ENSMUSG00000100629 ENSMUST00000189381 Gm28192 antisense Interval_49458 chr13 112216200 112216488 + 0 NA Intergenic Intergenic -2849 ENSMUSG00000104438.1 ENSMUSG00000104438 ENSMUST00000192356 Gm37427 TEC Interval_104654 chr3 69159171 69159712 + 0 NA Intergenic Intergenic 28208 ENSMUSG00000094763.3 ENSMUSG00000094763 ENSMUST00000195406 Gm1647 lincRNA Interval_72878 chr17 32871578 32873426 + 0 NA intron (ENSMUSG00000117654.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000117654.1, intron 1 of 1) 5440 ENSMUSG00000117654.1 ENSMUSG00000117654 ENSMUST00000234587 Gm50050 lincRNA Interval_149453 chr7 98692938 98693355 + 0 NA exon (ENSMUSG00000086477.3, exon 3 of 4) transcribed_unitary_pseudogene-exon (ENSMUSG00000086477.3, exon 3 of 4) 9288 ENSMUSG00000086477.3 ENSMUSG00000086477 ENSMUST00000238534 Gm15506 transcribed_unitary_pseudogene Interval_160526 chr8 110364071 110364615 + 0 NA intron (ENSMUSG00000059854.8, intron 9 of 25) protein_coding-intron (ENSMUSG00000059854.8, intron 9 of 86) 57124 ENSMUSG00000064393.1 ENSMUSG00000064393 ENSMUST00000082459 Gm23627 snRNA Interval_76287 chr17 78736142 78737078 + 0 NA exon (ENSMUSG00000024077.15, exon 1 of 18) protein_coding-exon (ENSMUSG00000024077.15, exon 1 of 18) 586 ENSMUSG00000024077.15 ENSMUSG00000024077 ENSMUST00000145480 Strn protein_coding Interval_45502 chr13 55510450 55511735 + 0 NA intron (ENSMUSG00000021493.15, intron 2 of 13) protein_coding-intron (ENSMUSG00000021493.15, intron 2 of 12) 2346 ENSMUSG00000021493.15 ENSMUSG00000021493 ENSMUST00000153426 Pdlim7 protein_coding Interval_35098 chr12 17299504 17300353 + 0 NA intron (ENSMUSG00000020566.19, intron 5 of 12) protein_coding-intron (ENSMUSG00000020566.19, intron 6 of 14) 24785 ENSMUSG00000020566.19 ENSMUSG00000020566 ENSMUST00000143131 Atp6v1c2 protein_coding Interval_106424 chr3 96113289 96114057 + 0 NA intron (ENSMUSG00000038495.14, intron 2 of 12) protein_coding-intron (ENSMUSG00000038495.14, intron 1 of 11) 9127 ENSMUSG00000038495.14 ENSMUSG00000038495 ENSMUST00000135263 Otud7b protein_coding Interval_109840 chr3 148848110 148848643 + 0 NA intron (ENSMUSG00000028184.12, intron 8 of 19) protein_coding-intron (ENSMUSG00000028184.12, intron 8 of 22) -140776 ENSMUSG00000104786.1 ENSMUSG00000104786 ENSMUST00000196445 Gm43573 antisense Interval_73310 chr17 36122491 36122699 + 0 NA intron (ENSMUSG00000092277.1, intron 1 of 2) protein_coding-intron (ENSMUSG00000092243.8, intron 4 of 4) 917 ENSMUSG00000092277.1 ENSMUSG00000092277 ENSMUST00000173128 Gm19684 protein_coding Interval_59404 chr15 52458531 52459390 + 0 NA Intergenic Intergenic 13838 ENSMUSG00000115241.1 ENSMUSG00000115241 ENSMUST00000227624 Gm41322 lincRNA Interval_163739 chr9 25116359 25116573 + 0 NA intron (ENSMUSG00000008429.8, intron 4 of 7) protein_coding-intron (ENSMUSG00000008429.8, intron 4 of 7) -14985 ENSMUSG00000066809.1 ENSMUSG00000066809 ENSMUST00000086236 Gm10180 processed_pseudogene Interval_111163 chr4 13637077 13637387 + 0 NA Intergenic Intergenic -14469 ENSMUSG00000092822.2 ENSMUSG00000092822 ENSMUST00000175081 Gm23162 miRNA Interval_67944 chr16 60022210 60023291 + 0 NA intron (ENSMUSG00000055540.15, intron 6 of 17) protein_coding-intron (ENSMUSG00000055540.15, intron 6 of 17) 346413 ENSMUSG00000096535.1 ENSMUSG00000096535 ENSMUST00000179691 Gm24755 miRNA Interval_154869 chr8 24506397 24506651 + 0 NA promoter-TSS (ENSMUSG00000109237.1) TEC-promoter-TSS (ENSMUSG00000109237.1) 94 ENSMUSG00000109237.1 ENSMUSG00000109237 ENSMUST00000208727 9130214F15Rik TEC Interval_148491 chr7 81716031 81717388 + 0 NA Intergenic Intergenic -23822 ENSMUSG00000025813.14 ENSMUSG00000025813 ENSMUST00000208107 Homer2 protein_coding Interval_121777 chr5 7971635 7971886 + 0 NA intron (ENSMUSG00000012428.9, intron 1 of 4) protein_coding-intron (ENSMUSG00000012428.9, intron 1 of 4) 11303 ENSMUSG00000012428.9 ENSMUSG00000012428 ENSMUST00000115421 Steap4 protein_coding Interval_49433 chr13 111950081 111950532 + 0 NA Intergenic Intergenic -41160 ENSMUSG00000086402.1 ENSMUSG00000086402 ENSMUST00000142621 Gm15322 lincRNA Interval_122949 chr5 27742862 27743111 + 0 NA intron (ENSMUSG00000002221.11, intron 20 of 20) protein_coding-intron (ENSMUSG00000002221.11, intron 20 of 20) 48705 ENSMUSG00000002221.11 ENSMUSG00000002221 ENSMUST00000199714 Paxip1 protein_coding Interval_68859 chr16 87637230 87638558 + 0 NA Intergenic Intergenic -16774 ENSMUSG00000064670.1 ENSMUSG00000064670 ENSMUST00000082736 Gm22808 snRNA Interval_118912 chr4 134425192 134425676 + 0 NA intron (ENSMUSG00000037366.14, intron 10 of 10) protein_coding-intron (ENSMUSG00000037366.14, intron 10 of 10) 24737 ENSMUSG00000087343.1 ENSMUSG00000087343 ENSMUST00000131110 1700021N21Rik antisense Interval_27976 chr11 71773033 71774811 + 0 NA intron (ENSMUSG00000020811.16, intron 2 of 4) protein_coding-intron (ENSMUSG00000020811.16, intron 5 of 8) 24002 ENSMUSG00000020811.16 ENSMUSG00000020811 ENSMUST00000132095 Wscd1 protein_coding Interval_134832 chr6 31964236 31964934 + 0 NA Intergenic Intergenic -85661 ENSMUSG00000029766.7 ENSMUSG00000029766 ENSMUST00000156267 1700012A03Rik protein_coding Interval_17562 chr10 77794178 77794834 + 0 NA exon (ENSMUSG00000096131.3, exon 1 of 1) protein_coding-exon (ENSMUSG00000096131.3, exon 1 of 1) 570 ENSMUSG00000096131.3 ENSMUSG00000096131 ENSMUST00000172205 Gm9639 protein_coding Interval_97566 chr2 139927886 139928148 + 0 NA intron (ENSMUSG00000039033.11, intron 10 of 13) protein_coding-intron (ENSMUSG00000039033.11, intron 10 of 13) 64720 ENSMUSG00000084207.1 ENSMUSG00000084207 ENSMUST00000120773 Gm14070 processed_pseudogene Interval_105785 chr3 89327284 89329141 + 0 NA Intergenic Intergenic -5325 ENSMUSG00000028039.11 ENSMUSG00000028039 ENSMUST00000139439 Efna3 protein_coding Interval_165263 chr9 45846928 45847858 + 0 NA intron (ENSMUSG00000032086.12, intron 1 of 2) protein_coding-intron (ENSMUSG00000032086.12, intron 1 of 8) -7234 ENSMUSG00000032086.12 ENSMUSG00000032086 ENSMUST00000162587 Bace1 protein_coding Interval_833 chr1 12204267 12204626 + 0 NA Intergenic Intergenic 83486 ENSMUSG00000101610.1 ENSMUSG00000101610 ENSMUST00000187748 Gm7560 processed_pseudogene Interval_29815 chr11 87020331 87020623 + 0 NA Intergenic Intergenic -23214 ENSMUSG00000088816.1 ENSMUSG00000088816 ENSMUST00000158191 Gm22387 scaRNA Interval_126845 chr5 94352566 94353131 + 0 NA intron (ENSMUSG00000073497.6, intron 1 of 2) protein_coding-intron (ENSMUSG00000073497.6, intron 1 of 2) -24469 ENSMUSG00000073497.6 ENSMUSG00000073497 ENSMUST00000202253 AA792892 protein_coding Interval_57830 chr15 22577362 22579066 + 0 NA intron (ENSMUSG00000040420.15, intron 1 of 6) protein_coding-intron (ENSMUSG00000040420.15, intron 1 of 6) 136616 ENSMUSG00000021927.7 ENSMUSG00000021927 ENSMUST00000022493 Hnrnpa1l2-ps2 processed_pseudogene Interval_98826 chr2 155356848 155357994 + 0 NA promoter-TSS (ENSMUSG00000038383.16) protein_coding-promoter-TSS (ENSMUSG00000038383.16) 3 ENSMUSG00000038383.16 ENSMUSG00000038383 ENSMUST00000124419 Pigu protein_coding Interval_31956 chr11 104114346 104115246 + 0 NA Intergenic Intergenic -18059 ENSMUSG00000018634.10 ENSMUSG00000018634 ENSMUST00000093925 Crhr1 protein_coding Interval_9596 chr1 160079314 160079659 + 0 NA exon (ENSMUSG00000090394.8, exon 3 of 3) protein_coding-exon (ENSMUSG00000090394.8, exon 3 of 3) -1544 ENSMUSG00000026729.9 ENSMUSG00000026729 ENSMUST00000169600 4930562F07Rik lincRNA Interval_103441 chr3 41587386 41588057 + 0 NA intron (ENSMUSG00000025764.14, intron 2 of 5) protein_coding-intron (ENSMUSG00000025764.14, intron 2 of 10) -24023 ENSMUSG00000103843.1 ENSMUSG00000103843 ENSMUST00000192060 Gm31266 antisense Interval_41801 chr12 119520002 119521141 + 0 NA Intergenic Intergenic 46680 ENSMUSG00000114186.1 ENSMUSG00000114186 ENSMUST00000223043 Gm48681 lincRNA Interval_1166 chr1 16491318 16491735 + 0 NA intron (ENSMUSG00000025920.19, intron 2 of 12) protein_coding-intron (ENSMUSG00000025920.19, intron 2 of 12) 27780 ENSMUSG00000025920.19 ENSMUSG00000025920 ENSMUST00000144138 Stau2 protein_coding Interval_65503 chr16 22872680 22873463 + 0 NA TTS (ENSMUSG00000004460.17) protein_coding-TTS (ENSMUSG00000004460.17) 15226 ENSMUSG00000004460.17 ENSMUSG00000004460 ENSMUST00000133013 Dnajb11 protein_coding Interval_99895 chr2 165663893 165665891 + 0 NA intron (ENSMUSG00000017897.18, intron 2 of 15) protein_coding-intron (ENSMUSG00000017897.18, intron 2 of 15) 1965 ENSMUSG00000081758.1 ENSMUSG00000081758 ENSMUST00000118200 Gm11460 processed_pseudogene Interval_104792 chr3 73439643 73439857 + 0 NA intron (ENSMUSG00000102362.1, intron 2 of 7) lincRNA-intron (ENSMUSG00000102820.1, intron 4 of 4) 41901 ENSMUSG00000102362.1 ENSMUSG00000102362 ENSMUST00000194514 4930509J09Rik lincRNA Interval_118262 chr4 129889615 129890520 + 0 NA Intergenic Intergenic -5506 ENSMUSG00000065768.1 ENSMUSG00000065768 ENSMUST00000083834 Gm23845 snRNA Interval_147696 chr7 72161875 72163524 + 0 NA promoter-TSS (ENSMUSG00000032776.9) protein_coding-promoter-TSS (ENSMUSG00000032776.9) -5566 ENSMUSG00000108493.1 ENSMUSG00000108493 ENSMUST00000206991 Gm45715 sense_intronic Interval_43496 chr13 31901044 31902674 + 0 NA intron (ENSMUSG00000038372.14, intron 9 of 10) protein_coding-intron (ENSMUSG00000038372.14, intron 9 of 10) 17634 ENSMUSG00000083149.2 ENSMUSG00000083149 ENSMUST00000118067 Gm11380 processed_pseudogene Interval_76285 chr17 78715755 78716088 + 0 NA intron (ENSMUSG00000024077.15, intron 1 of 17) protein_coding-intron (ENSMUSG00000024077.15, intron 1 of 17) 21275 ENSMUSG00000024077.15 ENSMUSG00000024077 ENSMUST00000145480 Strn protein_coding Interval_157204 chr8 67751547 67752225 + 0 NA intron (ENSMUSG00000030465.19, intron 12 of 16) protein_coding-intron (ENSMUSG00000030465.19, intron 10 of 14) -122780 ENSMUSG00000104757.1 ENSMUSG00000104757 ENSMUST00000198490 Gm44391 miRNA Interval_153899 chr8 10894436 10895224 + 0 NA Intergenic Intergenic -3239 ENSMUSG00000108969.1 ENSMUSG00000108969 ENSMUST00000208078 Gm45044 lincRNA Interval_150744 chr7 114066352 114067188 + 0 NA intron (ENSMUSG00000055723.6, intron 1 of 5) protein_coding-intron (ENSMUSG00000055723.6, intron 1 of 5) -20128 ENSMUSG00000110248.1 ENSMUSG00000110248 ENSMUST00000210417 Gm45615 antisense Interval_2985 chr1 51896154 51896840 + 0 NA promoter-TSS (ENSMUSG00000018417.14) protein_coding-promoter-TSS (ENSMUSG00000018417.14) -16889 ENSMUSG00000100313.1 ENSMUSG00000100313 ENSMUST00000186817 Gm28323 sense_intronic Interval_49747 chr13 114451088 114451721 + 0 NA TTS (ENSMUSG00000021765.9) protein_coding-TTS (ENSMUSG00000021765.9) 4832 ENSMUSG00000021765.9 ENSMUSG00000021765 ENSMUST00000225068 Fst protein_coding Interval_101111 chr2 178051920 178053230 + 0 NA Intergenic Intergenic 25850 ENSMUSG00000078861.8 ENSMUSG00000078861 ENSMUST00000108923 Zfp931 protein_coding Interval_120111 chr4 141909473 141909679 + 0 NA intron (ENSMUSG00000051435.11, intron 26 of 32) protein_coding-intron (ENSMUSG00000051435.11, intron 25 of 31) 12850 ENSMUSG00000051435.11 ENSMUSG00000051435 ENSMUST00000125293 Fhad1 protein_coding Interval_110677 chr4 6224905 6227284 + 0 NA Intergenic Intergenic 34871 ENSMUSG00000080961.1 ENSMUSG00000080961 ENSMUST00000119150 Gm11798 processed_pseudogene Interval_113039 chr4 47141020 47141354 + 0 NA Intergenic Intergenic -30482 ENSMUSG00000083491.1 ENSMUSG00000083491 ENSMUST00000118334 Gm12423 processed_pseudogene Interval_164424 chr9 36928318 36928794 + 0 NA intron (ENSMUSG00000035934.16, intron 4 of 10) protein_coding-intron (ENSMUSG00000035934.16, intron 6 of 12) -87202 ENSMUSG00000093721.1 ENSMUSG00000093721 ENSMUST00000176020 Gm3896 antisense Interval_119789 chr4 140001914 140002826 + 0 NA Intergenic Intergenic -34344 ENSMUSG00000078234.6 ENSMUSG00000078234 ENSMUST00000105031 Klhdc7a protein_coding Interval_89136 chr2 17155794 17156011 + 0 NA Intergenic Intergenic -13323 ENSMUSG00000081525.1 ENSMUSG00000081525 ENSMUST00000118746 Gm13325 processed_pseudogene Interval_108421 chr3 126978810 126979517 + 0 NA intron (ENSMUSG00000032826.19, intron 4 of 15) protein_coding-intron (ENSMUSG00000032826.19, intron 4 of 24) -3296 ENSMUSG00000105939.1 ENSMUSG00000105939 ENSMUST00000196232 Gm43322 TEC Interval_30310 chr11 93465593 93465852 + 0 NA intron (ENSMUSG00000056158.14, intron 4 of 9) protein_coding-intron (ENSMUSG00000056158.14, intron 4 of 9) -52398 ENSMUSG00000064743.1 ENSMUSG00000064743 ENSMUST00000082809 Gm24856 snRNA Interval_41024 chr12 110674044 110674801 + 0 NA TTS (ENSMUSG00000098618.1) miRNA-TTS (ENSMUSG00000098618.1) 322 ENSMUSG00000098618.1 ENSMUSG00000098618 ENSMUST00000184593 Gm27299 miRNA Interval_119259 chr4 136509998 136510397 + 0 NA intron (ENSMUSG00000001089.14, intron 1 of 1) protein_coding-intron (ENSMUSG00000001089.14, intron 1 of 3) 40436 ENSMUSG00000001089.14 ENSMUSG00000001089 ENSMUST00000168936 Luzp1 protein_coding Interval_170964 chr9 113331854 113332071 + 0 NA intron (ENSMUSG00000110784.1, intron 3 of 3) lincRNA-intron (ENSMUSG00000110784.1, intron 3 of 3) 20407 ENSMUSG00000110784.1 ENSMUSG00000110784 ENSMUST00000215648 Gm39436 lincRNA Interval_122817 chr5 25741111 25741386 + 0 NA Intergenic Intergenic -18791 ENSMUSG00000056367.14 ENSMUSG00000056367 ENSMUST00000198693 Actr3b protein_coding Interval_162257 chr8 126491865 126492716 + 0 NA Intergenic Intergenic -15878 ENSMUSG00000074026.3 ENSMUSG00000074026 ENSMUST00000098307 Gm6091 processed_pseudogene Interval_140598 chr6 119962544 119962830 + 0 NA exon (ENSMUSG00000045962.16, exon 9 of 28) protein_coding-exon (ENSMUSG00000045962.16, exon 9 of 28) -12533 ENSMUSG00000045962.16 ENSMUSG00000045962 ENSMUST00000159151 Wnk1 protein_coding Interval_30729 chr11 96157307 96157538 + 0 NA intron (ENSMUSG00000038756.13, intron 13 of 14) protein_coding-intron (ENSMUSG00000038756.13, intron 12 of 13) -20129 ENSMUSG00000086337.1 ENSMUSG00000086337 ENSMUST00000145517 Gm11535 lincRNA Interval_164862 chr9 42544616 42544975 + 0 NA intron (ENSMUSG00000032017.14, intron 16 of 20) protein_coding-intron (ENSMUSG00000032017.14, intron 14 of 18) -23964 ENSMUSG00000093745.1 ENSMUSG00000093745 ENSMUST00000176676 Gm24420 misc_RNA Interval_52315 chr14 44743423 44744183 + 0 NA intron (ENSMUSG00000091923.8, intron 1 of 5) protein_coding-intron (ENSMUSG00000091923.8, intron 1 of 5) -6637 ENSMUSG00000115321.1 ENSMUSG00000115321 ENSMUST00000228539 Gm34060 lincRNA Interval_80503 chr18 43002521 43005179 + 0 NA intron (ENSMUSG00000117792.1, intron 2 of 3) protein_coding-intron (ENSMUSG00000024500.20, intron 1 of 8) 66556 ENSMUSG00000094137.1 ENSMUSG00000094137 ENSMUST00000178200 Gm22264 snRNA Interval_152395 chr7 132734911 132736779 + 0 NA intron (ENSMUSG00000030956.15, intron 3 of 3) protein_coding-intron (ENSMUSG00000030956.15, intron 4 of 4) 66905 ENSMUSG00000030956.15 ENSMUSG00000030956 ENSMUST00000148303 Fam53b protein_coding Interval_90097 chr2 27973502 27974116 + 0 NA intron (ENSMUSG00000026837.16, intron 21 of 65) protein_coding-intron (ENSMUSG00000026837.16, intron 21 of 65) -48477 ENSMUSG00000026837.16 ENSMUSG00000026837 ENSMUST00000238851 Col5a1 protein_coding Interval_62931 chr15 97992495 97993611 + 0 NA intron (ENSMUSG00000022483.17, intron 15 of 52) protein_coding-intron (ENSMUSG00000022483.17, intron 16 of 53) 11438 ENSMUSG00000022483.17 ENSMUSG00000022483 ENSMUST00000230148 Col2a1 protein_coding Interval_151731 chr7 126301040 126303134 + 0 NA Intergenic Intergenic -2171 ENSMUSG00000066180.5 ENSMUSG00000066180 ENSMUST00000084598 Gm10155 processed_pseudogene Interval_86763 chr19 43698944 43699934 + 0 NA intron (ENSMUSG00000025192.13, intron 3 of 8) protein_coding-intron (ENSMUSG00000025192.13, intron 3 of 12) 9630 ENSMUSG00000025192.13 ENSMUSG00000025192 ENSMUST00000131293 Entpd7 protein_coding Interval_9312 chr1 156089385 156090166 + 0 NA intron (ENSMUSG00000015484.3, intron 1 of 4) protein_coding-intron (ENSMUSG00000015484.3, intron 1 of 4) 54003 ENSMUSG00000050565.16 ENSMUSG00000050565 ENSMUST00000125371 Tor1aip2 protein_coding Interval_123145 chr5 30104277 30105932 + 0 NA promoter-TSS (ENSMUSG00000044576.6) protein_coding-promoter-TSS (ENSMUSG00000044576.6) -57 ENSMUSG00000044576.6 ENSMUSG00000044576 ENSMUST00000058045 Garem2 protein_coding Interval_28539 chr11 76601079 76602323 + 0 NA TTS (ENSMUSG00000024205.7) processed_pseudogene-TTS (ENSMUSG00000024205.7) 382 ENSMUSG00000024205.7 ENSMUSG00000024205 ENSMUST00000136893 Rpl36-ps2 processed_pseudogene Interval_27138 chr11 63243836 63244285 + 0 NA Intergenic Intergenic -2585 ENSMUSG00000083052.1 ENSMUSG00000083052 ENSMUST00000117347 Gm12285 processed_pseudogene Interval_51944 chr14 34154358 34155212 + 0 NA Intergenic Intergenic -2296 ENSMUSG00000048337.3 ENSMUSG00000048337 ENSMUST00000052164 Npy4r protein_coding Interval_49518 chr13 112651804 112652787 + 0 NA promoter-TSS (ENSMUSG00000021758.14) protein_coding-promoter-TSS (ENSMUSG00000021758.14) 180 ENSMUSG00000021758.14 ENSMUSG00000021758 ENSMUST00000099166 Ddx4 protein_coding Interval_68484 chr16 78033011 78033390 + 0 NA Intergenic Intergenic -17517 ENSMUSG00000092759.1 ENSMUSG00000092759 ENSMUST00000175018 Gm25025 miRNA Interval_171416 chr9 117966535 117966880 + 0 NA intron (ENSMUSG00000032443.17, intron 1 of 3) protein_coding-intron (ENSMUSG00000032443.17, intron 2 of 9) -32629 ENSMUSG00000094677.1 ENSMUSG00000094677 ENSMUST00000104810 Gm22008 miRNA Interval_111441 chr4 21685523 21686054 + 0 NA promoter-TSS (ENSMUSG00000040478.14) protein_coding-promoter-TSS (ENSMUSG00000040478.14) -7 ENSMUSG00000040478.14 ENSMUSG00000040478 ENSMUST00000139568 Prdm13 protein_coding Interval_58987 chr15 41370018 41370472 + 0 NA Intergenic Intergenic -127087 ENSMUSG00000116178.1 ENSMUSG00000116178 ENSMUST00000229823 Gm49529 processed_pseudogene Interval_35762 chr12 29083554 29084281 + 0 NA Intergenic Intergenic 22820 ENSMUSG00000113544.1 ENSMUSG00000113544 ENSMUST00000222186 4833405L11Rik lincRNA Interval_91974 chr2 52106022 52106619 + 0 NA intron (ENSMUSG00000036202.16, intron 12 of 13) protein_coding-intron (ENSMUSG00000036202.16, intron 24 of 35) -5813 ENSMUSG00000036202.16 ENSMUSG00000036202 ENSMUST00000152178 Rif1 protein_coding Interval_56215 chr14 113169781 113170379 + 0 NA Intergenic Intergenic 41259 ENSMUSG00000115260.1 ENSMUSG00000115260 ENSMUST00000227945 Gm49005 processed_pseudogene Interval_154277 chr8 13973883 13975572 + 0 NA promoter-TSS (ENSMUSG00000050052.12) protein_coding-promoter-TSS (ENSMUSG00000050052.12) -34 ENSMUSG00000050052.12 ENSMUSG00000050052 ENSMUST00000119182 Tdrp protein_coding Interval_27292 chr11 65502214 65502553 + 0 NA Intergenic Intergenic -124011 ENSMUSG00000065104.1 ENSMUSG00000065104 ENSMUST00000083170 Gm26128 snRNA Interval_41071 chr12 110970992 110972162 + 0 NA TTS (ENSMUSG00000021275.16) protein_coding-TTS (ENSMUSG00000021275.16) 6678 ENSMUSG00000037904.14 ENSMUSG00000037904 ENSMUST00000144882 Ankrd9 protein_coding Interval_17553 chr10 77689507 77690655 + 0 NA exon (ENSMUSG00000095970.1, exon 1 of 1) protein_coding-exon (ENSMUSG00000095970.1, exon 1 of 1) 676 ENSMUSG00000095970.1 ENSMUSG00000095970 ENSMUST00000180297 Gm19402 protein_coding Interval_92768 chr2 65284253 65284570 + 0 NA Intergenic Intergenic 6994 ENSMUSG00000083707.1 ENSMUSG00000083707 ENSMUST00000118148 Gm13592 processed_pseudogene Interval_100544 chr2 170042713 170043518 + 0 NA intron (ENSMUSG00000047907.11, intron 1 of 1) protein_coding-intron (ENSMUSG00000047907.11, intron 1 of 1) -79928 ENSMUSG00000103935.1 ENSMUSG00000103935 ENSMUST00000194482 AY702102 TEC Interval_72493 chr17 30164515 30164722 + 0 NA promoter-TSS (ENSMUSG00000117947.1) TEC-promoter-TSS (ENSMUSG00000117947.1) -888 ENSMUSG00000117947.1 ENSMUSG00000117947 ENSMUST00000237534 Gm50226 TEC Interval_157553 chr8 71393024 71393657 + 0 NA intron (ENSMUSG00000034911.8, intron 3 of 5) protein_coding-intron (ENSMUSG00000034911.8, intron 4 of 12) 2462 ENSMUSG00000034911.8 ENSMUSG00000034911 ENSMUST00000213000 Ushbp1 protein_coding Interval_54329 chr14 67710099 67710414 + 0 NA intron (ENSMUSG00000048922.18, intron 4 of 14) protein_coding-intron (ENSMUSG00000048922.18, intron 4 of 7) 5354 ENSMUSG00000048922.18 ENSMUSG00000048922 ENSMUST00000124045 Cdca2 protein_coding Interval_51334 chr14 26506667 26506873 + 0 NA intron (ENSMUSG00000021870.17, intron 1 of 22) protein_coding-intron (ENSMUSG00000021870.17, intron 1 of 22) -7784 ENSMUSG00000078128.1 ENSMUSG00000078128 ENSMUST00000104927 Gm2178 processed_pseudogene Interval_34373 chr12 3675050 3675289 + 0 NA intron (ENSMUSG00000071454.13, intron 8 of 8) protein_coding-intron (ENSMUSG00000071454.13, intron 8 of 18) -24009 ENSMUSG00000077830.1 ENSMUSG00000077830 ENSMUST00000104640 Gm26050 miRNA Interval_37367 chr12 65561280 65561686 + 0 NA TTS (ENSMUSG00000077218.1) snoRNA-TTS (ENSMUSG00000077218.1) 811 ENSMUSG00000077218.1 ENSMUSG00000077218 ENSMUST00000104030 Gm23948 snoRNA Interval_4844 chr1 80185597 80186928 + 0 NA promoter-TSS (ENSMUSG00000099552.1) lincRNA-promoter-TSS (ENSMUSG00000099552.1) 1543 ENSMUSG00000099552.1 ENSMUSG00000099552 ENSMUST00000185548 9830004L10Rik lincRNA Interval_89733 chr2 25058550 25058813 + 0 NA intron (ENSMUSG00000006476.19, intron 4 of 7) protein_coding-intron (ENSMUSG00000006476.19, intron 5 of 14) -1130 ENSMUSG00000099320.1 ENSMUSG00000099320 ENSMUST00000184681 Mir7664 miRNA Interval_37911 chr12 73001966 73003659 + 0 NA Intergenic Intergenic 40003 ENSMUSG00000051367.8 ENSMUSG00000051367 ENSMUST00000175677 Six1 protein_coding Interval_156209 chr8 46056902 46057300 + 0 NA promoter-TSS (ENSMUSG00000038291.16) protein_coding-promoter-TSS (ENSMUSG00000038291.16) 23183 ENSMUSG00000038291.16 ENSMUSG00000038291 ENSMUST00000150645 Snx25 protein_coding Interval_138005 chr6 84093225 84096325 + 0 NA exon (ENSMUSG00000087001.2, exon 4 of 4) antisense-exon (ENSMUSG00000087001.2, exon 4 of 4) 12232 ENSMUSG00000087001.2 ENSMUSG00000087001 ENSMUST00000137673 Gm15475 antisense Interval_30560 chr11 95118311 95118774 + 0 NA Intergenic Intergenic -1577 ENSMUSG00000001510.8 ENSMUSG00000001510 ENSMUST00000092768 Dlx3 protein_coding Interval_162785 chr9 9083541 9083743 + 0 NA intron (ENSMUSG00000050730.17, intron 4 of 5) protein_coding-intron (ENSMUSG00000050730.17, intron 4 of 22) 111851 ENSMUSG00000078117.2 ENSMUSG00000078117 ENSMUST00000104915 Gm16485 TEC Interval_40954 chr12 110232106 110233307 + 0 NA intron (ENSMUSG00000113193.1, intron 2 of 5) lincRNA-intron (ENSMUSG00000113193.1, intron 2 of 5) 3656 ENSMUSG00000113193.1 ENSMUSG00000113193 ENSMUST00000221773 Gm40576 lincRNA Interval_117944 chr4 127233008 127233768 + 0 NA intron (ENSMUSG00000042388.14, intron 8 of 11) protein_coding-intron (ENSMUSG00000042388.14, intron 8 of 11) -10396 ENSMUSG00000042380.8 ENSMUSG00000042380 ENSMUST00000142029 Smim12 protein_coding Interval_57060 chr15 5227229 5227452 + 0 NA intron (ENSMUSG00000039942.15, intron 1 of 2) protein_coding-intron (ENSMUSG00000039942.15, intron 1 of 2) 15370 ENSMUSG00000039942.15 ENSMUSG00000039942 ENSMUST00000047379 Ptger4 protein_coding Interval_117450 chr4 123749518 123750903 + 0 NA promoter-TSS (ENSMUSG00000023075.9) protein_coding-promoter-TSS (ENSMUSG00000023075.9) 21 ENSMUSG00000023075.9 ENSMUSG00000023075 ENSMUST00000153472 Akirin1 protein_coding Interval_24890 chr11 40775458 40776648 + 0 NA Intergenic Intergenic -22115 ENSMUSG00000020326.7 ENSMUSG00000020326 ENSMUST00000151359 Ccng1 protein_coding Interval_6386 chr1 106721913 106723663 + 0 NA exon (ENSMUSG00000009905.5, exon 10 of 10) protein_coding-exon (ENSMUSG00000009905.5, exon 10 of 10) -9609 ENSMUSG00000057329.7 ENSMUSG00000057329 ENSMUST00000189999 Bcl2 protein_coding Interval_32421 chr11 107458054 107458709 + 0 NA intron (ENSMUSG00000040430.18, intron 1 of 9) protein_coding-intron (ENSMUSG00000040430.18, intron 1 of 9) -21147 ENSMUSG00000020720.13 ENSMUSG00000020720 ENSMUST00000106750 Psmd12 protein_coding Interval_36264 chr12 40459070 40460564 + 0 NA intron (ENSMUSG00000035954.10, intron 1 of 5) protein_coding-intron (ENSMUSG00000035954.10, intron 1 of 52) 13734 ENSMUSG00000035954.10 ENSMUSG00000035954 ENSMUST00000220850 Dock4 protein_coding Interval_99946 chr2 166041858 166042260 + 0 NA intron (ENSMUSG00000027678.17, intron 2 of 22) protein_coding-intron (ENSMUSG00000027678.17, intron 2 of 22) -5859 ENSMUSG00000027678.17 ENSMUSG00000027678 ENSMUST00000139394 Ncoa3 protein_coding Interval_39634 chr12 91696158 91696474 + 0 NA intron (ENSMUSG00000020961.15, intron 3 of 4) protein_coding-intron (ENSMUSG00000020961.15, intron 4 of 6) -10203 ENSMUSG00000090722.8 ENSMUSG00000090722 ENSMUST00000167777 Gm8378 sense_intronic Interval_137030 chr6 66603865 66604863 + 0 NA Intergenic Intergenic 13918 ENSMUSG00000059375.5 ENSMUSG00000059375 ENSMUST00000079678 Vmn1r33 protein_coding Interval_150831 chr7 115319508 115320203 + 0 NA Intergenic Intergenic 147582 ENSMUSG00000099211.1 ENSMUSG00000099211 ENSMUST00000183778 Gm27684 miRNA Interval_67597 chr16 52031015 52032225 + 0 NA promoter-TSS (ENSMUSG00000022637.11) protein_coding-promoter-TSS (ENSMUSG00000022637.11) -44333 ENSMUSG00000116725.1 ENSMUSG00000116725 ENSMUST00000232050 Gm29686 processed_transcript Interval_155743 chr8 36619098 36619454 + 0 NA intron (ENSMUSG00000031523.16, intron 5 of 17) protein_coding-intron (ENSMUSG00000031523.16, intron 1 of 13) 130085 ENSMUSG00000039620.17 ENSMUSG00000039620 ENSMUST00000125492 Trmt9b protein_coding Interval_107883 chr3 116576774 116577934 + 0 NA intron (ENSMUSG00000027961.7, intron 5 of 8) protein_coding-intron (ENSMUSG00000027961.7, intron 5 of 8) -2930 ENSMUSG00000106025.1 ENSMUSG00000106025 ENSMUST00000200361 Gm42940 TEC Interval_34256 chr11 121680604 121681113 + 0 NA Intergenic Intergenic -7705 ENSMUSG00000046605.14 ENSMUSG00000046605 ENSMUST00000062654 B3gntl1 protein_coding Interval_79142 chr18 24935397 24935954 + 0 NA intron (ENSMUSG00000034295.10, intron 5 of 24) protein_coding-intron (ENSMUSG00000034295.10, intron 5 of 26) 174512 ENSMUSG00000088920.1 ENSMUSG00000088920 ENSMUST00000158295 Gm24294 misc_RNA Interval_18402 chr10 85545013 85545891 + 0 NA intron (ENSMUSG00000020042.15, intron 1 of 16) protein_coding-intron (ENSMUSG00000020042.15, intron 1 of 9) -99751 ENSMUSG00000020042.15 ENSMUSG00000020042 ENSMUST00000145433 Btbd11 protein_coding Interval_49491 chr13 112412378 112413612 + 0 NA Intergenic Intergenic 4370 ENSMUSG00000114656.1 ENSMUSG00000114656 ENSMUST00000224082 2810403G07Rik lincRNA Interval_109986 chr3 152309920 152310182 + 0 NA intron (ENSMUSG00000054942.13, intron 1 of 2) protein_coding-intron (ENSMUSG00000054942.13, intron 7 of 13) 30333 ENSMUSG00000054942.13 ENSMUSG00000054942 ENSMUST00000200241 Miga1 protein_coding Interval_68028 chr16 64227970 64228316 + 0 NA Intergenic Intergenic -273013 ENSMUSG00000116722.1 ENSMUSG00000116722 ENSMUST00000231945 Gm49627 processed_pseudogene Interval_148800 chr7 88044291 88044534 + 0 NA intron (ENSMUSG00000049583.15, intron 6 of 8) protein_coding-intron (ENSMUSG00000049583.15, intron 6 of 7) -18649 ENSMUSG00000109461.1 ENSMUSG00000109461 ENSMUST00000207808 Gm44848 TEC Interval_31169 chr11 98681834 98683169 + 0 NA promoter-TSS (ENSMUSG00000017221.14) protein_coding-promoter-TSS (ENSMUSG00000017221.14) -90 ENSMUSG00000017221.14 ENSMUSG00000017221 ENSMUST00000142790 Psmd3 protein_coding Interval_174750 chrX 165190605 165191506 + 0 NA intron (ENSMUSG00000018589.8, intron 7 of 8) protein_coding-intron (ENSMUSG00000018589.8, intron 7 of 8) 136338 ENSMUSG00000018589.8 ENSMUSG00000018589 ENSMUST00000058787 Glra2 protein_coding Interval_129903 chr5 123002666 123003603 + 0 NA intron (ENSMUSG00000105311.1, intron 2 of 2) processed_transcript-intron (ENSMUSG00000105311.1, intron 2 of 2) 9740 ENSMUSG00000105311.1 ENSMUSG00000105311 ENSMUST00000172729 Gm44574 processed_transcript Interval_78981 chr18 23541899 23543538 + 0 NA promoter-TSS (ENSMUSG00000024302.16) protein_coding-promoter-TSS (ENSMUSG00000024302.16) 45883 ENSMUSG00000024302.16 ENSMUSG00000024302 ENSMUST00000222726 Dtna protein_coding Interval_78923 chr18 21699043 21699230 + 0 NA Intergenic Intergenic -44418 ENSMUSG00000042514.11 ENSMUSG00000042514 ENSMUST00000122333 Klhl14 protein_coding Interval_137676 chr6 78882712 78883005 + 0 NA Intergenic Intergenic -28309 ENSMUSG00000094980.1 ENSMUSG00000094980 ENSMUST00000083352 Gm23727 snRNA Interval_59797 chr15 59349538 59349751 + 0 NA intron (ENSMUSG00000022350.7, intron 4 of 18) protein_coding-intron (ENSMUSG00000022350.7, intron 14 of 28) 2885 ENSMUSG00000022350.7 ENSMUSG00000022350 ENSMUST00000022976 Washc5 protein_coding Interval_17343 chr10 75993443 75994491 + 0 NA promoter-TSS (ENSMUSG00000085662.1) antisense-promoter-TSS (ENSMUSG00000085662.1) 25 ENSMUSG00000085662.1 ENSMUSG00000085662 ENSMUST00000131874 Gm16220 antisense Interval_159973 chr8 105515872 105516561 + 0 NA Intergenic Intergenic -2539 ENSMUSG00000031891.6 ENSMUSG00000031891 ENSMUST00000034363 Hsd11b2 protein_coding Interval_94706 chr2 93576192 93576413 + 0 NA Intergenic Intergenic -66086 ENSMUSG00000040310.12 ENSMUSG00000040310 ENSMUST00000111254 Alx4 protein_coding Interval_149812 chr7 101762608 101764413 + 0 NA promoter-TSS (ENSMUSG00000001829.17) protein_coding-promoter-TSS (ENSMUSG00000001829.17) -27026 ENSMUSG00000110360.1 ENSMUSG00000110360 ENSMUST00000210465 Gm45380 processed_pseudogene Interval_115932 chr4 106378337 106378675 + 0 NA intron (ENSMUSG00000028514.15, intron 26 of 67) protein_coding-intron (ENSMUSG00000028514.15, intron 26 of 67) 62293 ENSMUSG00000028514.15 ENSMUSG00000028514 ENSMUST00000150521 Usp24 protein_coding Interval_73452 chr17 37405821 37406098 + 0 NA exon (ENSMUSG00000063188.4, exon 1 of 1) protein_coding-exon (ENSMUSG00000063188.4, exon 1 of 1) 2574 ENSMUSG00000092568.2 ENSMUSG00000092568 ENSMUST00000174238 Olfr759-ps1 unprocessed_pseudogene Interval_77611 chr17 93067718 93068610 + 0 NA Intergenic Intergenic 91643 ENSMUSG00000117409.1 ENSMUSG00000117409 ENSMUST00000234475 Gm49996 processed_pseudogene Interval_56314 chr14 117154714 117155024 + 0 NA intron (ENSMUSG00000058571.11, intron 1 of 9) protein_coding-intron (ENSMUSG00000058571.11, intron 1 of 8) 229338 ENSMUSG00000058571.11 ENSMUSG00000058571 ENSMUST00000078849 Gpc6 protein_coding Interval_66758 chr16 37102169 37102705 + 0 NA Intergenic Intergenic 90651 ENSMUSG00000034206.15 ENSMUSG00000034206 ENSMUST00000182717 Polq protein_coding Interval_154177 chr8 13226425 13226840 + 0 NA intron (ENSMUSG00000031448.12, intron 7 of 7) protein_coding-intron (ENSMUSG00000031448.12, intron 7 of 7) 25912 ENSMUSG00000099338.1 ENSMUSG00000099338 ENSMUST00000187595 2810030D12Rik bidirectional_promoter_lncRNA Interval_161409 chr8 120300456 120301267 + 0 NA intron (ENSMUSG00000031822.20, intron 1 of 2) protein_coding-intron (ENSMUSG00000092329.1, intron 1 of 15) -72631 ENSMUSG00000097960.1 ENSMUSG00000097960 ENSMUST00000183235 A330074K22Rik lincRNA Interval_91669 chr2 46690906 46691702 + 0 NA Intergenic Intergenic -84221 ENSMUSG00000089144.1 ENSMUSG00000089144 ENSMUST00000158519 Gm25264 snoRNA Interval_128512 chr5 113745527 113746089 + 0 NA promoter-TSS (ENSMUSG00000018974.7) protein_coding-promoter-TSS (ENSMUSG00000018974.7) 8949 ENSMUSG00000018974.7 ENSMUSG00000018974 ENSMUST00000196778 Sart3 protein_coding Interval_41578 chr12 116474645 116474936 + 0 NA Intergenic Intergenic 2209 ENSMUSG00000084629.1 ENSMUSG00000084629 ENSMUST00000122680 Gm25112 snRNA Interval_157019 chr8 64548074 64549146 + 0 NA Intergenic Intergenic -34169 ENSMUSG00000076042.1 ENSMUSG00000076042 ENSMUST00000102088 Mir710 miRNA Interval_53264 chr14 55681135 55682451 + 0 NA promoter-TSS (ENSMUSG00000007589.9) protein_coding-promoter-TSS (ENSMUSG00000007589.9) -74 ENSMUSG00000007589.9 ENSMUSG00000007589 ENSMUST00000228683 Tinf2 protein_coding Interval_164295 chr9 35098738 35099857 + 0 NA promoter-TSS (ENSMUSG00000032038.7) protein_coding-promoter-TSS (ENSMUSG00000032038.7) -17457 ENSMUSG00000070315.12 ENSMUSG00000070315 ENSMUST00000161136 4930581F22Rik processed_transcript Interval_119129 chr4 135739284 135739517 + 0 NA intron (ENSMUSG00000037157.8, intron 4 of 6) protein_coding-intron (ENSMUSG00000037157.8, intron 4 of 6) 11228 ENSMUSG00000037157.8 ENSMUSG00000037157 ENSMUST00000102546 Il22ra1 protein_coding Interval_66006 chr16 30878685 30879215 + 0 NA intron (ENSMUSG00000116737.1, intron 2 of 2) lincRNA-intron (ENSMUSG00000116737.1, intron 2 of 2) 8759 ENSMUSG00000116737.1 ENSMUSG00000116737 ENSMUST00000231959 Gm49757 lincRNA Interval_105624 chr3 88200331 88201543 + 0 NA exon (ENSMUSG00000097428.1, exon 1 of 2) processed_transcript-exon (ENSMUSG00000097428.1, exon 1 of 2) 314 ENSMUSG00000097428.1 ENSMUSG00000097428 ENSMUST00000180555 AW047730 processed_transcript Interval_57646 chr15 13160380 13160863 + 0 NA intron (ENSMUSG00000039385.5, intron 1 of 3) protein_coding-intron (ENSMUSG00000039385.5, intron 1 of 11) 13054 ENSMUSG00000039385.5 ENSMUSG00000039385 ENSMUST00000226917 Cdh6 protein_coding Interval_73618 chr17 41239260 41239580 + 0 NA Intergenic Intergenic -106577 ENSMUSG00000098030.1 ENSMUSG00000098030 ENSMUST00000182716 Gm6771 processed_pseudogene Interval_165681 chr9 50897396 50898186 + 0 NA intron (ENSMUSG00000037112.16, intron 12 of 14) protein_coding-intron (ENSMUSG00000037112.16, intron 12 of 15) 9841 ENSMUSG00000088708.1 ENSMUSG00000088708 ENSMUST00000158083 Gm25558 snRNA Interval_17379 chr10 76214052 76215101 + 0 NA intron (ENSMUSG00000020230.15, intron 1 of 3) protein_coding-intron (ENSMUSG00000020230.15, intron 7 of 10) 3179 ENSMUSG00000020230.15 ENSMUSG00000020230 ENSMUST00000217726 Prmt2 protein_coding Interval_151379 chr7 121962382 121964167 + 0 NA intron (ENSMUSG00000034951.10, intron 5 of 16) protein_coding-intron (ENSMUSG00000034951.10, intron 5 of 16) -18487 ENSMUSG00000108511.1 ENSMUSG00000108511 ENSMUST00000206578 Gm44987 antisense Interval_117516 chr4 124332267 124333252 + 0 NA promoter-TSS (ENSMUSG00000086978.1) lincRNA-promoter-TSS (ENSMUSG00000086978.1) -251 ENSMUSG00000086978.1 ENSMUSG00000086978 ENSMUST00000125578 4933435F18Rik lincRNA Interval_138120 chr6 85304815 85305072 + 0 NA intron (ENSMUSG00000033720.12, intron 2 of 3) protein_coding-intron (ENSMUSG00000033720.12, intron 2 of 13) 28479 ENSMUSG00000033720.12 ENSMUSG00000033720 ENSMUST00000203035 Sfxn5 protein_coding Interval_123062 chr5 29338914 29339422 + 0 NA intron (ENSMUSG00000010721.15, intron 3 of 14) protein_coding-intron (ENSMUSG00000010721.15, intron 4 of 16) -2322 ENSMUSG00000093302.1 ENSMUSG00000093302 ENSMUST00000175561 Gm23801 miRNA Interval_115492 chr4 99405101 99405735 + 0 NA Intergenic Intergenic 13293 ENSMUSG00000081184.1 ENSMUSG00000081184 ENSMUST00000121702 Gm12685 processed_pseudogene Interval_50182 chr14 8773969 8774604 + 0 NA Intergenic Intergenic 26049 ENSMUSG00000045799.6 ENSMUSG00000045799 ENSMUST00000052615 Gm9800 processed_pseudogene Interval_172443 chrX 20407603 20407814 + 0 NA Intergenic Intergenic 15999 ENSMUSG00000082855.1 ENSMUSG00000082855 ENSMUST00000117464 Gm14537 processed_pseudogene Interval_146112 chr7 43995819 43996076 + 0 NA promoter-TSS (ENSMUSG00000044485.4) protein_coding-promoter-TSS (ENSMUSG00000044485.4) 70 ENSMUSG00000044485.4 ENSMUSG00000044485 ENSMUST00000007156 Klk1b11 protein_coding Interval_21841 chr11 4679898 4680923 + 0 NA intron (ENSMUSG00000020412.16, intron 17 of 18) protein_coding-intron (ENSMUSG00000020412.16, intron 18 of 19) 23924 ENSMUSG00000059534.8 ENSMUSG00000059534 ENSMUST00000130236 Uqcr10 protein_coding Interval_37604 chr12 70234585 70235843 + 0 NA Intergenic Intergenic 7373 ENSMUSG00000085298.2 ENSMUSG00000085298 ENSMUST00000145871 F730035M05Rik lincRNA Interval_141036 chr6 124512097 124513016 + 0 NA exon (ENSMUSG00000055172.10, exon 1 of 11) protein_coding-exon (ENSMUSG00000055172.10, exon 1 of 11) 151 ENSMUSG00000055172.10 ENSMUSG00000055172 ENSMUST00000068593 C1ra protein_coding Interval_39909 chr12 99616754 99617082 + 0 NA intron (ENSMUSG00000097917.2, intron 2 of 3) bidirectional_promoter_lncRNA-intron (ENSMUSG00000097917.2, intron 2 of 3) 11056 ENSMUSG00000100211.1 ENSMUSG00000100211 ENSMUST00000185726 1700064M15Rik lincRNA Interval_54955 chr14 76466281 76467430 + 0 NA intron (ENSMUSG00000022010.19, intron 3 of 4) protein_coding-intron (ENSMUSG00000022010.19, intron 1 of 2) 48027 ENSMUSG00000022010.19 ENSMUSG00000022010 ENSMUST00000133224 Tsc22d1 protein_coding Interval_12692 chr10 4346512 4348183 + 0 NA promoter-TSS (ENSMUSG00000038587.10) protein_coding-promoter-TSS (ENSMUSG00000038587.10) 12802 ENSMUSG00000038587.10 ENSMUSG00000038587 ENSMUST00000215696 Akap12 protein_coding Interval_66452 chr16 33950420 33951442 + 0 NA Intergenic Intergenic -15308 ENSMUSG00000086083.1 ENSMUSG00000086083 ENSMUST00000145415 Gm15829 antisense Interval_32832 chr11 111347657 111347998 + 0 NA Intergenic Intergenic 71727 ENSMUSG00000082272.1 ENSMUSG00000082272 ENSMUST00000121873 Gm11675 processed_pseudogene Interval_17772 chr10 79990954 79991764 + 0 NA intron (ENSMUSG00000004665.10, intron 1 of 5) protein_coding-intron (ENSMUSG00000004665.10, intron 1 of 6) 2736 ENSMUSG00000004665.10 ENSMUSG00000004665 ENSMUST00000105374 Cnn2 protein_coding Interval_121483 chr4 156098225 156098503 + 0 NA Intergenic Intergenic -11634 ENSMUSG00000059939.13 ENSMUSG00000059939 ENSMUST00000141882 9430015G10Rik protein_coding Interval_21148 chr10 126900781 126901693 + 0 NA exon (ENSMUSG00000025436.12, exon 1 of 6) protein_coding-exon (ENSMUSG00000025436.12, exon 1 of 6) 113 ENSMUSG00000025436.12 ENSMUSG00000025436 ENSMUST00000220051 Atp23 protein_coding Interval_60702 chr15 76253458 76254549 + 0 NA Intergenic Intergenic 5812 ENSMUSG00000098625.1 ENSMUSG00000098625 ENSMUST00000184745 Mir6953 miRNA Interval_45882 chr13 58775903 58776230 + 0 NA exon (ENSMUSG00000114231.1, exon 4 of 4) lincRNA-exon (ENSMUSG00000114231.1, exon 4 of 4) 13681 ENSMUSG00000114808.1 ENSMUSG00000114808 ENSMUST00000224161 Gm47947 lincRNA Interval_66369 chr16 33446430 33447337 + 0 NA intron (ENSMUSG00000022811.17, intron 4 of 7) protein_coding-intron (ENSMUSG00000022811.17, intron 4 of 8) 66020 ENSMUSG00000022811.17 ENSMUSG00000022811 ENSMUST00000089677 Zfp148 protein_coding Interval_170557 chr9 108672727 108673704 + 0 NA intron (ENSMUSG00000032602.6, intron 1 of 2) protein_coding-intron (ENSMUSG00000032602.6, intron 3 of 8) 719 ENSMUSG00000032602.6 ENSMUSG00000032602 ENSMUST00000195260 Slc25a20 protein_coding Interval_167697 chr9 72103431 72103674 + 0 NA intron (ENSMUSG00000032228.16, intron 3 of 19) protein_coding-intron (ENSMUSG00000032228.16, intron 3 of 19) 8099 ENSMUSG00000032228.16 ENSMUSG00000032228 ENSMUST00000184806 Tcf12 protein_coding Interval_135752 chr6 46866286 46866987 + 0 NA intron (ENSMUSG00000039419.17, intron 15 of 23) protein_coding-intron (ENSMUSG00000039419.17, intron 15 of 23) 80683 ENSMUSG00000108217.1 ENSMUSG00000108217 ENSMUST00000204002 Gm43883 TEC Interval_33666 chr11 117822780 117823685 + 0 NA exon (ENSMUSG00000025574.13, exon 3 of 3) protein_coding-exon (ENSMUSG00000025574.13, exon 3 of 3) 2605 ENSMUSG00000025574.13 ENSMUSG00000025574 ENSMUST00000150027 Tk1 protein_coding Interval_153444 chr7 144837772 144839903 + 0 NA exon (ENSMUSG00000031074.14, exon 1 of 3) protein_coding-exon (ENSMUSG00000031074.14, exon 1 of 3) 754 ENSMUSG00000031074.14 ENSMUSG00000031074 ENSMUST00000105898 Fgf3 protein_coding Interval_61618 chr15 82987045 82988282 + 0 NA promoter-TSS (ENSMUSG00000100552.1) lincRNA-promoter-TSS (ENSMUSG00000100552.1) 167 ENSMUSG00000100552.1 ENSMUSG00000100552 ENSMUST00000186748 Gm29019 lincRNA Interval_145752 chr7 38047177 38048125 + 0 NA Intergenic Intergenic -11665 ENSMUSG00000108334.1 ENSMUSG00000108334 ENSMUST00000205683 Gm30771 lincRNA Interval_78948 chr18 22381114 22381577 + 0 NA intron (ENSMUSG00000045215.17, intron 2 of 11) protein_coding-intron (ENSMUSG00000045215.17, intron 2 of 12) 37099 ENSMUSG00000045215.17 ENSMUSG00000045215 ENSMUST00000097655 Asxl3 protein_coding Interval_163748 chr9 25240837 25241157 + 0 NA Intergenic Intergenic -11669 ENSMUSG00000001833.17 ENSMUSG00000001833 ENSMUST00000214360 Septin7 protein_coding Interval_81575 chr18 61776434 61776765 + 0 NA intron (ENSMUSG00000033032.15, intron 1 of 15) protein_coding-intron (ENSMUSG00000033032.15, intron 1 of 18) 10012 ENSMUSG00000033032.15 ENSMUSG00000033032 ENSMUST00000147278 Afap1l1 protein_coding Interval_160780 chr8 112179147 112179360 + 0 NA Intergenic Intergenic 57713 ENSMUSG00000110435.1 ENSMUSG00000110435 ENSMUST00000212314 Gm3635 processed_pseudogene Interval_163221 chr9 18473088 18474837 + 0 NA promoter-TSS (ENSMUSG00000074500.11) protein_coding-promoter-TSS (ENSMUSG00000074500.11) 4306 ENSMUSG00000074500.11 ENSMUSG00000074500 ENSMUST00000034646 Zfp558 protein_coding Interval_124259 chr5 43070449 43071762 + 0 NA Intergenic Intergenic 11850 ENSMUSG00000105416.1 ENSMUSG00000105416 ENSMUST00000196390 Gm42553 TEC Interval_115306 chr4 95684394 95685639 + 0 NA intron (ENSMUSG00000028573.18, intron 1 of 6) protein_coding-intron (ENSMUSG00000028573.18, intron 5 of 10) -122857 ENSMUSG00000093492.1 ENSMUSG00000093492 ENSMUST00000177219 Gm20651 processed_pseudogene Interval_168552 chr9 83498267 83498669 + 0 NA TTS (ENSMUSG00000100027.1) processed_pseudogene-TTS (ENSMUSG00000100027.1) 802 ENSMUSG00000100027.1 ENSMUSG00000100027 ENSMUST00000188125 Gm28477 processed_pseudogene Interval_110396 chr3 157717376 157718065 + 0 NA Intergenic Intergenic 8688 ENSMUSG00000106632.1 ENSMUSG00000106632 ENSMUST00000199819 Gm33466 lincRNA Interval_78665 chr18 16624096 16625203 + 0 NA intron (ENSMUSG00000024304.14, intron 11 of 14) protein_coding-intron (ENSMUSG00000024304.14, intron 12 of 15) -104084 ENSMUSG00000085575.1 ENSMUSG00000085575 ENSMUST00000149095 Gm15485 antisense Interval_133620 chr6 7706138 7707609 + 0 NA Intergenic Intergenic -14001 ENSMUSG00000029752.12 ENSMUSG00000029752 ENSMUST00000148349 Asns protein_coding Interval_69496 chr16 93876240 93876536 + 0 NA TTS (ENSMUSG00000039456.10) protein_coding-TTS (ENSMUSG00000039456.10) -12346 ENSMUSG00000116890.1 ENSMUSG00000116890 ENSMUST00000232065 Gm49617 sense_intronic Interval_153403 chr7 144437748 144438685 + 0 NA TTS (ENSMUSG00000031078.15) protein_coding-TTS (ENSMUSG00000031078.15) 11558 ENSMUSG00000031078.15 ENSMUSG00000031078 ENSMUST00000148778 Cttn protein_coding Interval_83942 chr19 5731365 5732061 + 0 NA promoter-TSS (ENSMUSG00000079478.9) protein_coding-promoter-TSS (ENSMUSG00000079478.9) 0 ENSMUSG00000118125.1 ENSMUSG00000118125 ENSMUST00000160852 Gm50387 protein_coding Interval_41967 chr13 5722398 5723260 + 0 NA intron (ENSMUSG00000114053.1, intron 1 of 4) lincRNA-intron (ENSMUSG00000114053.1, intron 1 of 2) 99029 ENSMUSG00000080562.2 ENSMUSG00000080562 ENSMUST00000116912 Gm26043 miRNA Interval_65970 chr16 30602842 30604194 + 0 NA TTS (ENSMUSG00000046546.3) protein_coding-TTS (ENSMUSG00000046546.3) 3795 ENSMUSG00000046546.3 ENSMUSG00000046546 ENSMUST00000059078 Fam43a protein_coding Interval_128108 chr5 110978483 110980229 + 0 NA TTS (ENSMUSG00000105112.1) TEC-TTS (ENSMUSG00000105112.1) 691 ENSMUSG00000105112.1 ENSMUSG00000105112 ENSMUST00000199644 Gm42778 TEC Interval_63338 chr15 100434795 100435022 + 0 NA Intergenic Intergenic -10816 ENSMUSG00000023030.16 ENSMUSG00000023030 ENSMUST00000154676 Slc11a2 protein_coding Interval_140267 chr6 115924687 115925548 + 0 NA intron (ENSMUSG00000030323.13, intron 10 of 12) protein_coding-intron (ENSMUSG00000030323.13, intron 26 of 28) -7439 ENSMUSG00000030324.8 ENSMUSG00000030324 ENSMUST00000203323 Rho protein_coding Interval_35923 chr12 31967329 31967795 + 0 NA intron (ENSMUSG00000002997.15, intron 6 of 10) protein_coding-intron (ENSMUSG00000002997.15, intron 6 of 11) -27155 ENSMUSG00000002996.17 ENSMUSG00000002996 ENSMUST00000175666 Hbp1 protein_coding Interval_73719 chr17 42975764 42976029 + 0 NA Intergenic Intergenic -40672 ENSMUSG00000023915.5 ENSMUSG00000023915 ENSMUST00000233482 Tnfrsf21 protein_coding Interval_76958 chr17 85160550 85161556 + 0 NA intron (ENSMUSG00000071037.6, intron 4 of 5) protein_coding-intron (ENSMUSG00000071037.6, intron 3 of 10) 70447 ENSMUSG00000071037.6 ENSMUSG00000071037 ENSMUST00000234501 Camkmt protein_coding Interval_87549 chr19 53383345 53384729 + 0 NA TTS (ENSMUSG00000025024.7) protein_coding-TTS (ENSMUSG00000025024.7) 6004 ENSMUSG00000025024.7 ENSMUSG00000025024 ENSMUST00000236245 Smndc1 protein_coding Interval_46217 chr13 62623554 62624658 + 0 NA promoter-TSS (ENSMUSG00000095020.1) miRNA-promoter-TSS (ENSMUSG00000095020.1) 74 ENSMUSG00000072066.7 ENSMUSG00000072066 ENSMUST00000091563 6720489N17Rik protein_coding Interval_47559 chr13 88529896 88530187 + 0 NA intron (ENSMUSG00000114273.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000114273.1, intron 1 of 2) 8851 ENSMUSG00000114273.1 ENSMUSG00000114273 ENSMUST00000224910 Gm34585 lincRNA Interval_24971 chr11 42270417 42270761 + 0 NA Intergenic Intergenic 50462 ENSMUSG00000020428.13 ENSMUSG00000020428 ENSMUST00000109286 Gabra6 protein_coding Interval_24586 chr11 34824795 34824998 + 0 NA promoter-TSS (ENSMUSG00000069910.2) protein_coding-promoter-TSS (ENSMUSG00000069910.2) -945 ENSMUSG00000069910.2 ENSMUSG00000069910 ENSMUST00000148387 Spdl1 protein_coding Interval_101786 chr3 9559927 9560127 + 0 NA intron (ENSMUSG00000040209.12, intron 1 of 9) protein_coding-intron (ENSMUSG00000040209.12, intron 2 of 8) 5272 ENSMUSG00000040209.12 ENSMUSG00000040209 ENSMUST00000192832 Zfp704 protein_coding Interval_120469 chr4 148819761 148820154 + 0 NA intron (ENSMUSG00000028977.17, intron 1 of 1) protein_coding-intron (ENSMUSG00000028977.17, intron 1 of 15) 94367 ENSMUSG00000086766.1 ENSMUSG00000086766 ENSMUST00000151967 Gm15969 antisense Interval_31883 chr11 103581206 103581582 + 0 NA intron (ENSMUSG00000034239.14, intron 7 of 13) protein_coding-intron (ENSMUSG00000034239.14, intron 7 of 13) 19711 ENSMUSG00000081676.1 ENSMUSG00000081676 ENSMUST00000119578 Gm11643 processed_pseudogene Interval_35356 chr12 21002870 21003897 + 0 NA intron (ENSMUSG00000052632.16, intron 1 of 9) protein_coding-intron (ENSMUSG00000052632.16, intron 1 of 9) 12845 ENSMUSG00000090370.4 ENSMUSG00000090370 ENSMUST00000232105 Gm21989 processed_transcript Interval_28826 chr11 78557216 78557943 + 0 NA Intergenic Intergenic 4021 ENSMUSG00000083176.1 ENSMUSG00000083176 ENSMUST00000122252 D11Bhm181e processed_pseudogene Interval_31789 chr11 102874175 102874877 + 0 NA intron (ENSMUSG00000020929.14, intron 1 of 26) protein_coding-intron (ENSMUSG00000020929.14, intron 2 of 27) -6719 ENSMUSG00000020930.9 ENSMUSG00000020930 ENSMUST00000159834 Ccdc103 protein_coding Interval_88815 chr2 11422347 11422561 + 0 NA Intergenic Intergenic 2230 ENSMUSG00000082314.2 ENSMUSG00000082314 ENSMUST00000117854 Gm13296 processed_pseudogene Interval_63826 chr16 3818535 3819641 + 0 NA Intergenic Intergenic -11810 ENSMUSG00000059043.2 ENSMUSG00000059043 ENSMUST00000080917 Olfr15 protein_coding Interval_112618 chr4 43599083 43599400 + 0 NA intron (ENSMUSG00000085351.1, intron 1 of 2) antisense-intron (ENSMUSG00000085351.1, intron 1 of 2) 11169 ENSMUSG00000085351.1 ENSMUSG00000085351 ENSMUST00000153232 Gm12472 antisense Interval_36439 chr12 44601270 44602807 + 0 NA TTS (ENSMUSG00000020598.16) protein_coding-TTS (ENSMUSG00000020598.16) 20624 ENSMUSG00000112823.1 ENSMUSG00000112823 ENSMUST00000217983 Gm6125 processed_pseudogene Interval_78042 chr18 7353636 7354488 + 0 NA exon (ENSMUSG00000057440.8, exon 1 of 2) protein_coding-exon (ENSMUSG00000057440.8, exon 1 of 2) -169989 ENSMUSG00000061802.6 ENSMUSG00000061802 ENSMUST00000234196 Armc4 protein_coding Interval_46776 chr13 70192500 70193496 + 0 NA intron (ENSMUSG00000113573.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000113573.1, intron 1 of 2) 24166 ENSMUSG00000077594.1 ENSMUSG00000077594 ENSMUST00000104406 Gm26018 snoRNA Interval_172528 chrX 26429214 26429545 + 0 NA Intergenic Intergenic 63283 ENSMUSG00000080819.1 ENSMUSG00000080819 ENSMUST00000120759 Gm2005 unprocessed_pseudogene Interval_109478 chr3 142793702 142793969 + 0 NA TTS (ENSMUSG00000004591.16) protein_coding-TTS (ENSMUSG00000004591.16) -1267 ENSMUSG00000087795.1 ENSMUSG00000087795 ENSMUST00000157170 Gm25965 snoRNA Interval_143893 chr7 16982643 16983773 + 0 NA exon (ENSMUSG00000108348.2, exon 1 of 1) protein_coding-exon (ENSMUSG00000108348.2, exon 1 of 1) 122 ENSMUSG00000108348.2 ENSMUSG00000108348 ENSMUST00000206129 Gm42372 protein_coding Interval_100130 chr2 167230317 167231038 + 0 NA intron (ENSMUSG00000017969.13, intron 1 of 9) protein_coding-intron (ENSMUSG00000017969.13, intron 1 of 9) -22261 ENSMUSG00000017969.13 ENSMUSG00000017969 ENSMUST00000136271 Ptgis protein_coding Interval_32097 chr11 105229720 105230077 + 0 NA intron (ENSMUSG00000020694.17, intron 6 of 17) protein_coding-intron (ENSMUSG00000020694.17, intron 6 of 20) 21045 ENSMUSG00000020694.17 ENSMUSG00000020694 ENSMUST00000146910 Tlk2 protein_coding Interval_19302 chr10 96368519 96369292 + 0 NA Intergenic Intergenic -23081 ENSMUSG00000112749.1 ENSMUSG00000112749 ENSMUST00000218388 Gm48428 lincRNA Interval_92905 chr2 68349354 68350909 + 0 NA intron (ENSMUSG00000027030.15, intron 3 of 10) protein_coding-intron (ENSMUSG00000027030.15, intron 10 of 17) 36550 ENSMUSG00000027030.15 ENSMUSG00000027030 ENSMUST00000149581 Stk39 protein_coding Interval_132083 chr5 142694554 142695194 + 0 NA intron (ENSMUSG00000050822.11, intron 1 of 3) protein_coding-intron (ENSMUSG00000050822.11, intron 1 of 3) 2362 ENSMUSG00000050822.11 ENSMUSG00000050822 ENSMUST00000058418 Slc29a4 protein_coding Interval_85632 chr19 29199081 29199279 + 0 NA Intergenic Intergenic 39062 ENSMUSG00000068466.6 ENSMUSG00000068466 ENSMUST00000084171 Gm5518 processed_pseudogene Interval_68057 chr16 64785068 64785276 + 0 NA exon (ENSMUSG00000047141.5, exon 1 of 2) protein_coding-exon (ENSMUSG00000047141.5, exon 1 of 2) -18516 ENSMUSG00000059920.9 ENSMUSG00000059920 ENSMUST00000076991 4930453N24Rik protein_coding Interval_78519 chr18 14098059 14098741 + 0 NA Intergenic Intergenic -133909 ENSMUSG00000117633.1 ENSMUSG00000117633 ENSMUST00000234218 8430422H06Rik lincRNA Interval_94621 chr2 92732263 92733131 + 0 NA Intergenic Intergenic -9533 ENSMUSG00000085976.1 ENSMUSG00000085976 ENSMUST00000152230 Gm13816 lincRNA Interval_31804 chr11 102982726 102983038 + 0 NA Intergenic Intergenic 17039 ENSMUSG00000098613.1 ENSMUSG00000098613 ENSMUST00000184841 Mir6931 miRNA Interval_66348 chr16 33306044 33307008 + 0 NA Intergenic Intergenic 55084 ENSMUSG00000022808.5 ENSMUSG00000022808 ENSMUST00000231242 Snx4 protein_coding Interval_54041 chr14 64696537 64697027 + 0 NA intron (ENSMUSG00000060012.9, intron 2 of 2) protein_coding-intron (ENSMUSG00000060012.9, intron 2 of 39) 44222 ENSMUSG00000060012.9 ENSMUSG00000060012 ENSMUST00000224677 Kif13b protein_coding Interval_52104 chr14 36384950 36385335 + 0 NA Intergenic Intergenic -153101 ENSMUSG00000114494.1 ENSMUSG00000114494 ENSMUST00000224615 Gm48663 processed_pseudogene Interval_59871 chr15 60382185 60382454 + 0 NA Intergenic Intergenic -9800 ENSMUSG00000115251.1 ENSMUSG00000115251 ENSMUST00000228258 Gm4774 processed_pseudogene Interval_30817 chr11 96685032 96685838 + 0 NA intron (ENSMUSG00000057058.16, intron 4 of 7) protein_coding-intron (ENSMUSG00000057058.16, intron 4 of 11) -81367 ENSMUSG00000085242.1 ENSMUSG00000085242 ENSMUST00000124865 Gm11537 antisense Interval_114159 chr4 65306575 65306779 + 0 NA intron (ENSMUSG00000028370.7, intron 14 of 21) protein_coding-intron (ENSMUSG00000028370.7, intron 14 of 21) 182503 ENSMUSG00000028370.7 ENSMUSG00000028370 ENSMUST00000084501 Pappa protein_coding Interval_125698 chr5 73346514 73347220 + 0 NA Intergenic Intergenic -8309 ENSMUSG00000029153.11 ENSMUSG00000029153 ENSMUST00000200821 Ociad2 protein_coding Interval_21570 chr10 130092873 130093515 + 0 NA exon (ENSMUSG00000108253.1, exon 1 of 1) unprocessed_pseudogene-exon (ENSMUSG00000108253.1, exon 1 of 1) 650 ENSMUSG00000108253.1 ENSMUSG00000108253 ENSMUST00000204175 Olfr1542-ps1 unprocessed_pseudogene Interval_81786 chr18 64659769 64661692 + 0 NA promoter-TSS (ENSMUSG00000039529.9) protein_coding-promoter-TSS (ENSMUSG00000039529.9) 77 ENSMUSG00000039529.9 ENSMUSG00000039529 ENSMUST00000237686 Atp8b1 protein_coding Interval_22360 chr11 9115457 9118942 + 0 NA promoter-TSS (ENSMUSG00000020407.13) protein_coding-promoter-TSS (ENSMUSG00000020407.13) -1588 ENSMUSG00000020407.13 ENSMUSG00000020407 ENSMUST00000146696 Upp1 protein_coding Interval_12836 chr10 6034243 6035035 + 0 NA Intergenic Intergenic -112253 ENSMUSG00000019775.17 ENSMUSG00000019775 ENSMUST00000019909 Rgs17 protein_coding Interval_78647 chr18 16395210 16395424 + 0 NA Intergenic Intergenic -120373 ENSMUSG00000063628.2 ENSMUSG00000063628 ENSMUST00000076710 Gm7665 processed_pseudogene Interval_126930 chr5 97384610 97384940 + 0 NA exon (ENSMUSG00000046000.5, exon 2 of 2) protein_coding-exon (ENSMUSG00000046000.5, exon 2 of 2) 7604 ENSMUSG00000046000.5 ENSMUSG00000046000 ENSMUST00000060265 Naa11 protein_coding Interval_78465 chr18 13043645 13043862 + 0 NA Intergenic Intergenic 36716 ENSMUSG00000037346.5 ENSMUSG00000037346 ENSMUST00000234565 Hrh4 protein_coding Interval_14264 chr10 30062678 30062880 + 0 NA Intergenic Intergenic 22555 ENSMUSG00000111001.1 ENSMUSG00000111001 ENSMUST00000215786 Gm8767 processed_pseudogene Interval_56263 chr14 115371387 115371691 + 0 NA intron (ENSMUSG00000022112.14, intron 3 of 7) protein_coding-intron (ENSMUSG00000022112.14, intron 3 of 7) 38013 ENSMUSG00000093551.1 ENSMUSG00000093551 ENSMUST00000176582 4930505G20Rik processed_transcript Interval_120070 chr4 141639495 141640207 + 0 NA exon (ENSMUSG00000028917.14, exon 7 of 20) protein_coding-exon (ENSMUSG00000028917.14, exon 7 of 20) -8804 ENSMUSG00000028917.14 ENSMUSG00000028917 ENSMUST00000141844 Plekhm2 protein_coding Interval_76087 chr17 74828344 74828581 + 0 NA intron (ENSMUSG00000024078.7, intron 6 of 13) protein_coding-intron (ENSMUSG00000024078.7, intron 13 of 19) -8551 ENSMUSG00000117444.1 ENSMUSG00000117444 ENSMUST00000234963 Gm50020 antisense Interval_75503 chr17 67565146 67566327 + 0 NA intron (ENSMUSG00000117029.1, intron 2 of 2) lincRNA-intron (ENSMUSG00000117029.1, intron 2 of 2) 14129 ENSMUSG00000087829.1 ENSMUSG00000087829 ENSMUST00000157204 Gm22277 misc_RNA Interval_173902 chrX 108828343 108828865 + 0 NA intron (ENSMUSG00000063663.11, intron 4 of 40) protein_coding-intron (ENSMUSG00000063663.11, intron 4 of 38) -5196 ENSMUSG00000086629.8 ENSMUSG00000086629 ENSMUST00000124329 2810403D21Rik processed_transcript Interval_139 GL456385.1 27762 28332 + 0 NA NA NA NA NA Interval_79969 chr18 36348206 36349444 + 0 NA promoter-TSS (ENSMUSG00000046727.13) protein_coding-promoter-TSS (ENSMUSG00000046727.13) 6245 ENSMUSG00000046727.13 ENSMUSG00000046727 ENSMUST00000144158 Cystm1 protein_coding Interval_8882 chr1 151786276 151786992 + 0 NA intron (ENSMUSG00000043019.12, intron 8 of 20) protein_coding-intron (ENSMUSG00000043019.12, intron 8 of 19) 31174 ENSMUSG00000043019.12 ENSMUSG00000043019 ENSMUST00000191070 Edem3 protein_coding Interval_119540 chr4 138251927 138252325 + 0 NA intron (ENSMUSG00000028758.12, intron 1 of 13) protein_coding-intron (ENSMUSG00000028758.12, intron 1 of 13) -4609 ENSMUSG00000045349.15 ENSMUSG00000045349 ENSMUST00000154421 Sh2d5 protein_coding Interval_152689 chr7 136293566 136294918 + 0 NA intron (ENSMUSG00000110027.1, intron 3 of 3) lincRNA-intron (ENSMUSG00000110027.1, intron 3 of 3) 5586 ENSMUSG00000109792.1 ENSMUSG00000109792 ENSMUST00000209393 Gm45426 TEC Interval_118033 chr4 128503460 128503879 + 0 NA intron (ENSMUSG00000028804.20, intron 44 of 70) protein_coding-intron (ENSMUSG00000028804.20, intron 44 of 70) -48906 ENSMUSG00000028804.20 ENSMUSG00000028804 ENSMUST00000221199 Csmd2 protein_coding Interval_160221 chr8 107242408 107242655 + 0 NA Intergenic Intergenic 20717 ENSMUSG00000057657.4 ENSMUSG00000057657 ENSMUST00000080443 Rps18-ps3 processed_pseudogene Interval_100238 chr2 167847138 167847385 + 0 NA Intergenic Intergenic -11324 ENSMUSG00000085411.1 ENSMUSG00000085411 ENSMUST00000142937 Gm14319 lincRNA Interval_118468 chr4 131866716 131867152 + 0 NA intron (ENSMUSG00000028910.12, intron 4 of 4) protein_coding-intron (ENSMUSG00000028910.12, intron 9 of 9) 9197 ENSMUSG00000028910.12 ENSMUSG00000028910 ENSMUST00000128607 Mecr protein_coding Interval_161426 chr8 120399250 120399658 + 0 NA intron (ENSMUSG00000031822.20, intron 2 of 2) protein_coding-intron (ENSMUSG00000092329.1, intron 1 of 15) 44095 ENSMUSG00000080549.2 ENSMUSG00000080549 ENSMUST00000116899 Gm22715 miRNA Interval_138311 chr6 87111399 87112201 + 0 NA TTS (ENSMUSG00000090891.3) protein_coding-TTS (ENSMUSG00000090891.3) 6987 ENSMUSG00000090891.3 ENSMUSG00000090891 ENSMUST00000205257 D6Ertd527e protein_coding Interval_144217 chr7 20049472 20049656 + 0 NA exon (ENSMUSG00000060508.16, exon 9 of 10) protein_coding-exon (ENSMUSG00000060508.16, exon 9 of 10) -23213 ENSMUSG00000109103.1 ENSMUSG00000109103 ENSMUST00000207706 Gm18877 processed_pseudogene Interval_75050 chr17 62458875 62459428 + 0 NA Intergenic Intergenic -2031 ENSMUSG00000064570.1 ENSMUSG00000064570 ENSMUST00000082636 Gm25800 snoRNA Interval_14499 chr10 34372321 34373242 + 0 NA intron (ENSMUSG00000039480.14, intron 5 of 10) protein_coding-intron (ENSMUSG00000039480.14, intron 6 of 11) -17200 ENSMUSG00000039462.4 ENSMUSG00000039462 ENSMUST00000105511 Col10a1 protein_coding Interval_13588 chr10 19984967 19985885 + 0 NA intron (ENSMUSG00000071369.11, intron 1 of 3) protein_coding-intron (ENSMUSG00000071369.11, intron 1 of 29) -77775 ENSMUSG00000020003.16 ENSMUSG00000020003 ENSMUST00000214951 Pex7 protein_coding Interval_125957 chr5 76207388 76208306 + 0 NA exon (ENSMUSG00000029234.13, exon 5 of 6) protein_coding-exon (ENSMUSG00000029234.13, exon 5 of 6) 3727 ENSMUSG00000029234.13 ENSMUSG00000029234 ENSMUST00000153633 Tmem165 protein_coding Interval_131103 chr5 135133681 135135020 + 0 NA intron (ENSMUSG00000005373.13, intron 2 of 2) protein_coding-intron (ENSMUSG00000005373.13, intron 14 of 16) -11057 ENSMUSG00000107296.1 ENSMUSG00000107296 ENSMUST00000201067 Gm43500 antisense Interval_22469 chr11 10637003 10637561 + 0 NA Intergenic Intergenic -260200 ENSMUSG00000084045.1 ENSMUSG00000084045 ENSMUST00000118697 Gm11997 processed_pseudogene Interval_121540 chr5 3317671 3318095 + 0 NA Intergenic Intergenic 47564 ENSMUSG00000106658.1 ENSMUSG00000106658 ENSMUST00000197473 Gm36548 lincRNA Interval_35608 chr12 25383600 25384823 + 0 NA intron (ENSMUSG00000113669.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000113669.1, intron 2 of 3) 66026 ENSMUSG00000113669.1 ENSMUSG00000113669 ENSMUST00000221270 Gm36723 lincRNA Interval_87645 chr19 53965161 53965388 + 0 NA intron (ENSMUSG00000024976.14, intron 2 of 2) protein_coding-intron (ENSMUSG00000024976.14, intron 1 of 8) -2505 ENSMUSG00000117704.1 ENSMUSG00000117704 ENSMUST00000235879 Gm50273 TEC Interval_166202 chr9 57477035 57477495 + 0 NA Intergenic Intergenic -5711 ENSMUSG00000111380.1 ENSMUSG00000111380 ENSMUST00000214169 D9Wsu149 processed_pseudogene Interval_88020 chr19 57956371 57957104 + 0 NA intron (ENSMUSG00000054843.9, intron 27 of 28) protein_coding-intron (ENSMUSG00000054843.9, intron 27 of 28) -94430 ENSMUSG00000093757.1 ENSMUSG00000093757 ENSMUST00000176631 Mir5623 miRNA Interval_36556 chr12 49579599 49580081 + 0 NA Intergenic Intergenic -1257 ENSMUSG00000089025.1 ENSMUSG00000089025 ENSMUST00000158400 Gm25015 snoRNA Interval_13506 chr10 18844344 18845492 + 0 NA promoter-TSS (ENSMUSG00000019851.8) protein_coding-promoter-TSS (ENSMUSG00000019851.8) -102 ENSMUSG00000019851.8 ENSMUSG00000019851 ENSMUST00000019998 Perp protein_coding Interval_88444 chr2 5097553 5098678 + 0 NA Intergenic Intergenic -39661 ENSMUSG00000026676.7 ENSMUSG00000026676 ENSMUST00000027988 Ccdc3 protein_coding Interval_16191 chr10 61339198 61339661 + 0 NA intron (ENSMUSG00000020092.9, intron 2 of 3) protein_coding-intron (ENSMUSG00000020092.9, intron 17 of 19) 2898 ENSMUSG00000020092.9 ENSMUSG00000020092 ENSMUST00000219132 Pald1 protein_coding Interval_100645 chr2 170695347 170696504 + 0 NA Intergenic Intergenic -33460 ENSMUSG00000085158.1 ENSMUSG00000085158 ENSMUST00000147141 Gm14264 lincRNA Interval_47759 chr13 92406740 92407097 + 0 NA Intergenic Intergenic -19740 ENSMUSG00000045034.12 ENSMUSG00000045034 ENSMUST00000168871 Ankrd34b protein_coding Interval_77055 chr17 86116189 86116573 + 0 NA intron (ENSMUSG00000024135.10, intron 2 of 6) protein_coding-intron (ENSMUSG00000024135.10, intron 9 of 20) -59194 ENSMUSG00000117546.1 ENSMUSG00000117546 ENSMUST00000234087 AC154542.1 TEC Interval_147859 chr7 74363508 74363932 + 0 NA intron (ENSMUSG00000025790.14, intron 1 of 1) protein_coding-intron (ENSMUSG00000025790.14, intron 2 of 9) -16489 ENSMUSG00000025790.14 ENSMUSG00000025790 ENSMUST00000129292 Slco3a1 protein_coding Interval_71075 chr17 17704424 17704664 + 0 NA intron (ENSMUSG00000092120.2, intron 1 of 3) protein_coding-intron (ENSMUSG00000092120.2, intron 1 of 5) 797 ENSMUSG00000092120.2 ENSMUSG00000092120 ENSMUST00000232113 Vmn2r90 protein_coding Interval_7715 chr1 133239716 133241290 + 0 NA intron (ENSMUSG00000041757.17, intron 1 of 22) protein_coding-intron (ENSMUSG00000041757.17, intron 1 of 22) -16039 ENSMUSG00000041757.17 ENSMUSG00000041757 ENSMUST00000190208 Plekha6 protein_coding Interval_151043 chr7 118128985 118130231 + 0 NA promoter-TSS (ENSMUSG00000030654.9) protein_coding-promoter-TSS (ENSMUSG00000030654.9) -36 ENSMUSG00000030654.9 ENSMUSG00000030654 ENSMUST00000206536 Arl6ip1 protein_coding Interval_82917 chr18 79093111 79093347 + 0 NA intron (ENSMUSG00000024548.11, intron 1 of 5) protein_coding-intron (ENSMUSG00000024548.11, intron 1 of 5) 16162 ENSMUSG00000024548.11 ENSMUSG00000024548 ENSMUST00000025430 Setbp1 protein_coding Interval_62903 chr15 97807765 97809021 + 0 NA promoter-TSS (ENSMUSG00000022475.19) protein_coding-promoter-TSS (ENSMUSG00000022475.19) 23101 ENSMUSG00000022475.19 ENSMUSG00000022475 ENSMUST00000134258 Hdac7 protein_coding Interval_43286 chr13 28757457 28758942 + 0 NA intron (ENSMUSG00000085936.7, intron 2 of 5) processed_transcript-intron (ENSMUSG00000085936.7, intron 2 of 5) -47326 ENSMUSG00000099158.1 ENSMUSG00000099158 ENSMUST00000184136 Mir6368 miRNA Interval_122269 chr5 20822862 20823140 + 0 NA intron (ENSMUSG00000039987.15, intron 2 of 5) protein_coding-intron (ENSMUSG00000039987.15, intron 2 of 17) 16911 ENSMUSG00000082716.1 ENSMUSG00000082716 ENSMUST00000118086 Rpl31-ps5 processed_pseudogene Interval_75043 chr17 62058000 62058336 + 0 NA Intergenic Intergenic 185793 ENSMUSG00000117160.1 ENSMUSG00000117160 ENSMUST00000232834 Gm49859 processed_pseudogene Interval_81145 chr18 54952327 54952860 + 0 NA intron (ENSMUSG00000052713.9, intron 2 of 9) protein_coding-intron (ENSMUSG00000052713.9, intron 2 of 9) 4164 ENSMUSG00000052713.9 ENSMUSG00000052713 ENSMUST00000237009 Zfp608 protein_coding Interval_1064 chr1 14734062 14734425 + 0 NA Intergenic Intergenic -18694 ENSMUSG00000054493.2 ENSMUSG00000054493 ENSMUST00000067599 Gm9947 antisense Interval_45191 chr13 53099765 53100702 + 0 NA Intergenic Intergenic 71315 ENSMUSG00000112952.1 ENSMUSG00000112952 ENSMUST00000222184 Gm48336 lincRNA Interval_50490 chr14 14034731 14034956 + 0 NA intron (ENSMUSG00000021738.5, intron 2 of 3) protein_coding-intron (ENSMUSG00000021738.5, intron 3 of 11) 21699 ENSMUSG00000021738.5 ENSMUSG00000021738 ENSMUST00000224315 Atxn7 protein_coding Interval_163606 chr9 22489137 22489556 + 0 NA intron (ENSMUSG00000035919.16, intron 2 of 22) protein_coding-intron (ENSMUSG00000035919.16, intron 1 of 21) -8900 ENSMUSG00000090067.1 ENSMUSG00000090067 ENSMUST00000160362 Gm2976 processed_pseudogene Interval_83414 chr18 84983204 84983578 + 0 NA Intergenic Intergenic 29944 ENSMUSG00000118255.1 ENSMUSG00000118255 ENSMUST00000238005 Gm50369 processed_pseudogene Interval_10312 chr1 168409879 168410811 + 0 NA intron (ENSMUSG00000052534.15, intron 2 of 7) protein_coding-intron (ENSMUSG00000052534.15, intron 2 of 6) 21925 ENSMUSG00000052534.15 ENSMUSG00000052534 ENSMUST00000176791 Pbx1 protein_coding Interval_151317 chr7 120943053 120943321 + 0 NA intron (ENSMUSG00000030880.14, intron 18 of 19) protein_coding-intron (ENSMUSG00000030880.14, intron 19 of 20) 8357 ENSMUSG00000030880.14 ENSMUSG00000030880 ENSMUST00000209014 Polr3e protein_coding Interval_110120 chr3 153458549 153459281 + 0 NA intron (ENSMUSG00000052544.9, intron 1 of 2) protein_coding-intron (ENSMUSG00000052544.9, intron 1 of 2) 15739 ENSMUSG00000104964.1 ENSMUSG00000104964 ENSMUST00000196286 4930597L12Rik TEC Interval_164405 chr9 36781494 36782018 + 0 NA intron (ENSMUSG00000062762.17, intron 10 of 10) protein_coding-intron (ENSMUSG00000062762.17, intron 10 of 10) 13869 ENSMUSG00000096993.3 ENSMUSG00000096993 ENSMUST00000180474 Gm26787 antisense Interval_98946 chr2 156259270 156259632 + 0 NA intron (ENSMUSG00000038116.16, intron 3 of 16) protein_coding-intron (ENSMUSG00000038116.16, intron 4 of 17) 36571 ENSMUSG00000038116.16 ENSMUSG00000038116 ENSMUST00000122814 Phf20 protein_coding Interval_148309 chr7 80422873 80423489 + 0 NA Intergenic Intergenic -6029 ENSMUSG00000081664.1 ENSMUSG00000081664 ENSMUST00000118776 Gm15544 processed_pseudogene Interval_120012 chr4 141363016 141363608 + 0 NA Intergenic Intergenic -4908 ENSMUSG00000006218.4 ENSMUSG00000006218 ENSMUST00000006380 Fam131c protein_coding Interval_34330 chr12 3426141 3427846 + 0 NA promoter-TSS (ENSMUSG00000071456.6) antisense-promoter-TSS (ENSMUSG00000071456.6) -246 ENSMUSG00000071456.6 ENSMUSG00000071456 ENSMUST00000180149 1110002L01Rik antisense Interval_30224 chr11 91131982 91132187 + 0 NA Intergenic Intergenic -270736 ENSMUSG00000083764.1 ENSMUSG00000083764 ENSMUST00000118450 Gm11516 processed_pseudogene Interval_83306 chr18 84037461 84039259 + 0 NA intron (ENSMUSG00000046982.11, intron 1 of 1) protein_coding-intron (ENSMUSG00000046982.11, intron 1 of 1) 49346 ENSMUSG00000046982.11 ENSMUSG00000046982 ENSMUST00000237918 Tshz1 protein_coding Interval_85458 chr19 26710689 26711511 + 0 NA TTS (ENSMUSG00000024921.17) protein_coding-TTS (ENSMUSG00000024921.17) -37302 ENSMUSG00000024921.17 ENSMUSG00000024921 ENSMUST00000208984 Smarca2 protein_coding Interval_67977 chr16 62422447 62422665 + 0 NA Intergenic Intergenic 61393 ENSMUSG00000118558.1 ENSMUSG00000118558 ENSMUST00000239089 CT010569.1 processed_pseudogene Interval_150807 chr7 114832182 114832479 + 0 NA TTS (ENSMUSG00000077644.1) snoRNA-TTS (ENSMUSG00000077644.1) 184 ENSMUSG00000077644.1 ENSMUSG00000077644 ENSMUST00000104456 Gm24982 snoRNA Interval_14198 chr10 28678176 28678569 + 0 NA intron (ENSMUSG00000049109.15, intron 1 of 2) protein_coding-intron (ENSMUSG00000049109.15, intron 1 of 5) -59053 ENSMUSG00000049109.15 ENSMUSG00000049109 ENSMUST00000219119 Themis protein_coding Interval_31069 chr11 97977666 97978067 + 0 NA TTS (ENSMUSG00000017417.14) protein_coding-TTS (ENSMUSG00000017417.14) 8567 ENSMUSG00000017417.14 ENSMUSG00000017417 ENSMUST00000107564 Plxdc1 protein_coding Interval_89519 chr2 21585101 21586137 + 0 NA intron (ENSMUSG00000045967.11, intron 4 of 7) protein_coding-intron (ENSMUSG00000045967.11, intron 4 of 10) -142090 ENSMUSG00000080846.1 ENSMUSG00000080846 ENSMUST00000118053 Gm13379 processed_pseudogene Interval_106125 chr3 93430843 93432168 + 0 NA intron (ENSMUSG00000102476.1, intron 1 of 3) lincRNA-intron (ENSMUSG00000102476.1, intron 1 of 3) 1800 ENSMUSG00000076037.1 ENSMUSG00000076037 ENSMUST00000102083 Gm22752 miRNA Interval_168590 chr9 83930248 83930574 + 0 NA intron (ENSMUSG00000032263.14, intron 1 of 10) protein_coding-intron (ENSMUSG00000032263.14, intron 1 of 10) 5266 ENSMUSG00000032263.14 ENSMUSG00000032263 ENSMUST00000186136 Bckdhb protein_coding Interval_74596 chr17 53601214 53602262 + 0 NA intron (ENSMUSG00000000708.14, intron 1 of 5) protein_coding-intron (ENSMUSG00000000708.14, intron 1 of 17) -3075 ENSMUSG00000096517.1 ENSMUSG00000096517 ENSMUST00000180049 Gm6919 processed_pseudogene Interval_4243 chr1 72141593 72142630 + 0 NA Intergenic Intergenic -20110 ENSMUSG00000102123.1 ENSMUSG00000102123 ENSMUST00000191139 Gm4319 lincRNA Interval_40193 chr12 102446753 102446994 + 0 NA promoter-TSS (ENSMUSG00000113265.1) lincRNA-promoter-TSS (ENSMUSG00000113265.1) -455 ENSMUSG00000113265.1 ENSMUSG00000113265 ENSMUST00000222873 Gm30198 lincRNA Interval_44661 chr13 46995325 46995778 + 0 NA intron (ENSMUSG00000051606.5, intron 2 of 6) processed_transcript-intron (ENSMUSG00000051606.5, intron 2 of 2) -12773 ENSMUSG00000051606.5 ENSMUSG00000051606 ENSMUST00000060680 2010001K21Rik processed_transcript Interval_48584 chr13 100511337 100511634 + 0 NA TTS (ENSMUSG00000021638.12) protein_coding-TTS (ENSMUSG00000021638.12) -34290 ENSMUSG00000021639.17 ENSMUSG00000021639 ENSMUST00000152049 Gtf2h2 protein_coding Interval_76846 chr17 84480049 84481302 + 0 NA Intergenic Intergenic 70568 ENSMUSG00000117391.1 ENSMUSG00000117391 ENSMUST00000234072 4930500A05Rik antisense Interval_159718 chr8 99123803 99124575 + 0 NA intron (ENSMUSG00000036510.17, intron 8 of 12) protein_coding-intron (ENSMUSG00000036510.17, intron 8 of 12) 23900 ENSMUSG00000086842.2 ENSMUSG00000086842 ENSMUST00000137501 Gm15681 processed_pseudogene Interval_81607 chr18 62058850 62059406 + 0 NA Intergenic Intergenic 81169 ENSMUSG00000045629.8 ENSMUSG00000045629 ENSMUST00000236759 Sh3tc2 protein_coding Interval_156243 chr8 46496044 46496356 + 0 NA intron (ENSMUSG00000018796.13, intron 3 of 5) protein_coding-intron (ENSMUSG00000018796.13, intron 2 of 20) -22610 ENSMUSG00000109807.1 ENSMUSG00000109807 ENSMUST00000211328 Gm45244 TEC Interval_60951 chr15 78148506 78148998 + 0 NA Intergenic Intergenic 18184 ENSMUSG00000016637.7 ENSMUSG00000016637 ENSMUST00000229417 Ift27 protein_coding Interval_97690 chr2 142823303 142823560 + 0 NA intron (ENSMUSG00000038844.10, intron 12 of 26) protein_coding-intron (ENSMUSG00000038844.10, intron 12 of 25) 36535 ENSMUSG00000088134.1 ENSMUSG00000088134 ENSMUST00000157509 Gm22310 snoRNA Interval_10163 chr1 166267431 166267860 + 0 NA intron (ENSMUSG00000040612.13, intron 1 of 8) protein_coding-intron (ENSMUSG00000040612.13, intron 1 of 9) 13452 ENSMUSG00000040612.13 ENSMUSG00000040612 ENSMUST00000193860 Ildr2 protein_coding Interval_72753 chr17 31929700 31930389 + 0 NA Intergenic Intergenic 17378 ENSMUSG00000117980.1 ENSMUSG00000117980 ENSMUST00000237005 Gm30571 TEC Interval_138665 chr6 90968536 90969671 + 0 NA intron (ENSMUSG00000034312.15, intron 1 of 15) protein_coding-intron (ENSMUSG00000034312.15, intron 1 of 15) 63284 ENSMUSG00000099662.1 ENSMUSG00000099662 ENSMUST00000117103 Ppp1r2-ps2 processed_pseudogene Interval_25936 chr11 52747617 52748318 + 0 NA Intergenic Intergenic -16667 ENSMUSG00000036264.9 ENSMUSG00000036264 ENSMUST00000036796 Fstl4 protein_coding Interval_135481 chr6 39556984 39558412 + 0 NA exon (ENSMUSG00000038456.9, exon 1 of 19) protein_coding-exon (ENSMUSG00000038456.9, exon 1 of 19) -18694 ENSMUSG00000046947.12 ENSMUSG00000046947 ENSMUST00000127427 Adck2 protein_coding Interval_15075 chr10 42356089 42356631 + 0 NA intron (ENSMUSG00000038302.14, intron 6 of 10) protein_coding-intron (ENSMUSG00000038302.14, intron 8 of 12) -25097 ENSMUSG00000081873.1 ENSMUSG00000081873 ENSMUST00000120526 Gm15197 processed_pseudogene Interval_131365 chr5 136739169 136739535 + 0 NA Intergenic Intergenic 41573 ENSMUSG00000005474.9 ENSMUSG00000005474 ENSMUST00000197849 Myl10 protein_coding Interval_50761 chr14 19273774 19273992 + 0 NA intron (ENSMUSG00000114304.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000114304.1, intron 1 of 2) 2609 ENSMUSG00000114304.1 ENSMUSG00000114304 ENSMUST00000224018 Gm48099 lincRNA Interval_28101 chr11 72818870 72819114 + 0 NA intron (ENSMUSG00000055670.14, intron 2 of 54) protein_coding-intron (ENSMUSG00000055670.14, intron 2 of 54) -14469 ENSMUSG00000084329.1 ENSMUSG00000084329 ENSMUST00000118302 Gm6733 processed_pseudogene Interval_98322 chr2 151008448 151009796 + 0 NA intron (ENSMUSG00000068115.13, intron 1 of 4) protein_coding-intron (ENSMUSG00000068115.13, intron 1 of 23) 16940 ENSMUSG00000082375.1 ENSMUSG00000082375 ENSMUST00000120236 Gm14141 processed_pseudogene Interval_14924 chr10 41182633 41183008 + 0 NA Intergenic Intergenic -33225 ENSMUSG00000093933.1 ENSMUSG00000093933 ENSMUST00000104332 Gm25526 snoRNA Interval_34822 chr12 12278398 12279065 + 0 NA intron (ENSMUSG00000020589.17, intron 2 of 3) protein_coding-intron (ENSMUSG00000020589.17, intron 1 of 11) 16548 ENSMUSG00000020589.17 ENSMUSG00000020589 ENSMUST00000222357 Fam49a protein_coding Interval_73387 chr17 36922527 36923995 + 0 NA promoter-TSS (ENSMUSG00000092239.1) antisense-promoter-TSS (ENSMUSG00000092239.1) -531 ENSMUSG00000092239.1 ENSMUSG00000092239 ENSMUST00000174380 1700031A10Rik antisense Interval_881 chr1 12954092 12954648 + 0 NA intron (ENSMUSG00000025938.16, intron 2 of 9) protein_coding-intron (ENSMUSG00000025938.16, intron 1 of 7) 36807 ENSMUSG00000025938.16 ENSMUSG00000025938 ENSMUST00000191566 Slco5a1 protein_coding Interval_115459 chr4 99132330 99133613 + 0 NA Intergenic Intergenic 16557 ENSMUSG00000087395.1 ENSMUSG00000087395 ENSMUST00000129460 Gm12705 antisense Interval_138515 chr6 88848917 88850603 + 0 NA promoter-TSS (ENSMUSG00000033152.13) protein_coding-promoter-TSS (ENSMUSG00000033152.13) -917 ENSMUSG00000033152.13 ENSMUSG00000033152 ENSMUST00000135843 Podxl2 protein_coding Interval_80094 chr18 37484894 37485174 + 0 NA exon (ENSMUSG00000046387.5, exon 1 of 1) protein_coding-exon (ENSMUSG00000046387.5, exon 1 of 1) 239 ENSMUSG00000046387.5 ENSMUSG00000046387 ENSMUST00000053856 Pcdhb17 protein_coding Interval_114210 chr4 67841010 67841444 + 0 NA Intergenic Intergenic -89654 ENSMUSG00000083087.1 ENSMUSG00000083087 ENSMUST00000117071 Gm11249 processed_pseudogene Interval_159917 chr8 105170230 105171955 + 0 NA promoter-TSS (ENSMUSG00000031885.14) protein_coding-promoter-TSS (ENSMUSG00000031885.14) -400 ENSMUSG00000031885.14 ENSMUSG00000031885 ENSMUST00000187323 Cbfb protein_coding Interval_171915 chr9 122502896 122504725 + 0 NA Intergenic Intergenic 7801 ENSMUSG00000111244.1 ENSMUSG00000111244 ENSMUST00000216783 Gm47130 processed_pseudogene Interval_146054 chr7 43554956 43556228 + 0 NA Intergenic Intergenic -5727 ENSMUSG00000108411.1 ENSMUSG00000108411 ENSMUST00000206608 Gm44818 lincRNA Interval_120601 chr4 149620146 149621741 + 0 NA intron (ENSMUSG00000039953.13, intron 2 of 17) protein_coding-intron (ENSMUSG00000039953.13, intron 2 of 18) -6187 ENSMUSG00000039953.13 ENSMUSG00000039953 ENSMUST00000151895 Clstn1 protein_coding Interval_143428 chr7 6717107 6717353 + 0 NA intron (ENSMUSG00000002265.17, intron 4 of 8) protein_coding-intron (ENSMUSG00000002265.17, intron 4 of 8) 13191 ENSMUSG00000002265.17 ENSMUSG00000002265 ENSMUST00000155910 Peg3 protein_coding Interval_157601 chr8 71657948 71658371 + 0 NA intron (ENSMUSG00000034799.16, intron 10 of 44) protein_coding-intron (ENSMUSG00000034799.16, intron 10 of 43) 13577 ENSMUSG00000034799.16 ENSMUSG00000034799 ENSMUST00000175780 Unc13a protein_coding Interval_27839 chr11 70347299 70347547 + 0 NA intron (ENSMUSG00000018924.6, intron 7 of 13) protein_coding-intron (ENSMUSG00000018924.6, intron 7 of 13) -1727 ENSMUSG00000018924.6 ENSMUSG00000018924 ENSMUST00000130000 Alox15 protein_coding Interval_138236 chr6 86515895 86516409 + 0 NA exon (ENSMUSG00000107689.1, exon 1 of 2) lincRNA-exon (ENSMUSG00000107689.1, exon 1 of 2) 121 ENSMUSG00000107689.1 ENSMUSG00000107689 ENSMUST00000204288 Gm44386 lincRNA Interval_138757 chr6 91659995 91660632 + 0 NA Intergenic Intergenic 18910 ENSMUSG00000108751.1 ENSMUSG00000108751 ENSMUST00000206576 Gm45217 TEC Interval_45952 chr13 59611198 59612352 + 0 NA intron (ENSMUSG00000021555.15, intron 1 of 5) protein_coding-intron (ENSMUSG00000021555.15, intron 11 of 22) 8466 ENSMUSG00000114535.1 ENSMUSG00000114535 ENSMUST00000225230 Gm47246 TEC Interval_132605 chr5 146699455 146701049 + 0 NA Intergenic Intergenic -6370 ENSMUSG00000106020.1 ENSMUSG00000106020 ENSMUST00000197707 4930573C15Rik lincRNA Interval_12962 chr10 8762181 8764716 + 0 NA promoter-TSS (ENSMUSG00000015305.6) protein_coding-promoter-TSS (ENSMUSG00000015305.6) 50207 ENSMUSG00000111215.1 ENSMUSG00000111215 ENSMUST00000213934 Gm48654 lincRNA Interval_113993 chr4 62316103 62316853 + 0 NA intron (ENSMUSG00000066151.12, intron 13 of 20) protein_coding-intron (ENSMUSG00000066151.12, intron 19 of 27) 22017 ENSMUSG00000066151.12 ENSMUSG00000066151 ENSMUST00000131977 Fkbp15 protein_coding Interval_101871 chr3 10305337 10307540 + 0 NA Intergenic Intergenic 1647 ENSMUSG00000104092.2 ENSMUSG00000104092 ENSMUST00000194572 A930014E01Rik TEC Interval_40874 chr12 109014618 109015655 + 0 NA intron (ENSMUSG00000040877.16, intron 4 of 6) protein_coding-intron (ENSMUSG00000040877.16, intron 5 of 7) -23485 ENSMUSG00000113478.1 ENSMUSG00000113478 ENSMUST00000220743 Gm18405 processed_pseudogene Interval_130783 chr5 130362660 130364229 + 0 NA Intergenic Intergenic 21186 ENSMUSG00000052014.6 ENSMUSG00000052014 ENSMUST00000063656 A330070K13Rik protein_coding Interval_5759 chr1 91533611 91534588 + 0 NA Intergenic Intergenic -6633 ENSMUSG00000026311.16 ENSMUSG00000026311 ENSMUST00000188879 Asb1 protein_coding Interval_119391 chr4 137416896 137418906 + 0 NA Intergenic Intergenic 4890 ENSMUSG00000023433.8 ENSMUSG00000023433 ENSMUST00000134565 Cela3b protein_coding Interval_157183 chr8 67267512 67267746 + 0 NA Intergenic Intergenic 11602 ENSMUSG00000089380.1 ENSMUSG00000089380 ENSMUST00000158755 Gm24677 snoRNA Interval_173903 chrX 108832795 108834978 + 0 NA promoter-TSS (ENSMUSG00000086629.8) processed_transcript-promoter-TSS (ENSMUSG00000086629.8) 86 ENSMUSG00000086629.8 ENSMUSG00000086629 ENSMUST00000124329 2810403D21Rik processed_transcript Interval_71812 chr17 26251961 26253698 + 0 NA promoter-TSS (ENSMUSG00000024188.16) protein_coding-promoter-TSS (ENSMUSG00000024188.16) -393 ENSMUSG00000024188.16 ENSMUSG00000024188 ENSMUST00000152107 Luc7l protein_coding Interval_167459 chr9 69501371 69501613 + 0 NA Intergenic Intergenic 14709 ENSMUSG00000032231.14 ENSMUSG00000032231 ENSMUST00000154591 Anxa2 protein_coding Interval_72199 chr17 28537486 28539518 + 0 NA intron (ENSMUSG00000024223.3, intron 5 of 5) protein_coding-intron (ENSMUSG00000024223.3, intron 5 of 5) 7696 ENSMUSG00000024223.3 ENSMUSG00000024223 ENSMUST00000233114 Armc12 protein_coding Interval_55520 chr14 90345430 90346216 + 0 NA Intergenic Intergenic -10564 ENSMUSG00000077619.1 ENSMUSG00000077619 ENSMUST00000104431 Gm25495 snoRNA Interval_157515 chr8 71130148 71133300 + 0 NA Intergenic Intergenic 12382 ENSMUSG00000098594.1 ENSMUSG00000098594 ENSMUST00000184911 Gm27628 miRNA Interval_74555 chr17 53329534 53330409 + 0 NA Intergenic Intergenic -24541 ENSMUSG00000117248.1 ENSMUSG00000117248 ENSMUST00000233251 Gm29770 processed_pseudogene Interval_4710 chr1 77472608 77474296 + 0 NA intron (ENSMUSG00000026235.14, intron 2 of 15) protein_coding-intron (ENSMUSG00000026235.14, intron 3 of 17) 23316 ENSMUSG00000099141.1 ENSMUSG00000099141 ENSMUST00000184495 Mir6352 miRNA Interval_44785 chr13 48624822 48626084 + 0 NA promoter-TSS (ENSMUSG00000038042.11) protein_coding-promoter-TSS (ENSMUSG00000038042.11) 31952 ENSMUSG00000113037.1 ENSMUSG00000113037 ENSMUST00000221947 Gm36550 antisense Interval_65383 chr16 22038680 22038992 + 0 NA intron (ENSMUSG00000022855.9, intron 11 of 15) protein_coding-intron (ENSMUSG00000022855.9, intron 12 of 16) -14674 ENSMUSG00000068487.6 ENSMUSG00000068487 ENSMUST00000132879 Ndufa11b processed_pseudogene Interval_132606 chr5 146706040 146706284 + 0 NA promoter-TSS (ENSMUSG00000106020.1) lincRNA-promoter-TSS (ENSMUSG00000106020.1) -460 ENSMUSG00000106020.1 ENSMUSG00000106020 ENSMUST00000197707 4930573C15Rik lincRNA Interval_4633 chr1 75556871 75557380 + 0 NA intron (ENSMUSG00000006576.16, intron 18 of 20) protein_coding-intron (ENSMUSG00000006576.16, intron 20 of 22) 10469 ENSMUSG00000006576.16 ENSMUSG00000006576 ENSMUST00000132110 Slc4a3 protein_coding Interval_53835 chr14 62464795 62465534 + 0 NA intron (ENSMUSG00000100486.7, intron 2 of 3) protein_coding-intron (ENSMUSG00000100486.7, intron 2 of 3) -8878 ENSMUSG00000021933.11 ENSMUSG00000021933 ENSMUST00000128573 Gucy1b2 protein_coding Interval_122180 chr5 18986753 18987718 + 0 NA Intergenic Intergenic 122658 ENSMUSG00000089364.1 ENSMUSG00000089364 ENSMUST00000158739 Gm23822 snoRNA Interval_148122 chr7 79365896 79366511 + 0 NA TTS (ENSMUSG00000039202.12) protein_coding-TTS (ENSMUSG00000039202.12) -13458 ENSMUSG00000089453.1 ENSMUSG00000089453 ENSMUST00000158828 Gm24224 misc_RNA Interval_129362 chr5 119543018 119544251 + 0 NA Intergenic Intergenic -15680 ENSMUSG00000106938.1 ENSMUSG00000106938 ENSMUST00000201435 Gm31314 lincRNA Interval_14972 chr10 41582992 41584155 + 0 NA intron (ENSMUSG00000075225.15, intron 6 of 20) protein_coding-intron (ENSMUSG00000075225.15, intron 3 of 12) 15557 ENSMUSG00000091370.1 ENSMUSG00000091370 ENSMUST00000165647 5730435O14Rik processed_transcript Interval_131802 chr5 139971840 139973841 + 0 NA exon (ENSMUSG00000048988.8, exon 2 of 2) protein_coding-exon (ENSMUSG00000048988.8, exon 2 of 2) -9049 ENSMUSG00000106090.1 ENSMUSG00000106090 ENSMUST00000196164 Gm43704 processed_pseudogene Interval_125748 chr5 73864078 73865085 + 0 NA Intergenic Intergenic -48315 ENSMUSG00000107027.1 ENSMUSG00000107027 ENSMUST00000202487 1700019F05Rik lincRNA Interval_82072 chr18 67540279 67540544 + 0 NA intron (ENSMUSG00000024533.17, intron 2 of 13) protein_coding-intron (ENSMUSG00000024533.17, intron 2 of 14) -21983 ENSMUSG00000091695.2 ENSMUSG00000091695 ENSMUST00000163749 Gm17669 processed_pseudogene Interval_113188 chr4 49322431 49322848 + 0 NA intron (ENSMUSG00000063446.4, intron 5 of 7) protein_coding-intron (ENSMUSG00000063446.4, intron 5 of 7) -19609 ENSMUSG00000096476.1 ENSMUSG00000096476 ENSMUST00000121981 Gm12453 processed_pseudogene Interval_74353 chr17 49348267 49348542 + 0 NA Intergenic Intergenic -16908 ENSMUSG00000117198.1 ENSMUSG00000117198 ENSMUST00000233953 Gm18067 processed_pseudogene Interval_85446 chr19 26566250 26567103 + 0 NA Intergenic Intergenic -6320 ENSMUSG00000114682.1 ENSMUSG00000114682 ENSMUST00000224822 Gm48775 lincRNA Interval_172764 chrX 48433011 48434024 + 0 NA intron (ENSMUSG00000031103.12, intron 1 of 7) protein_coding-intron (ENSMUSG00000031103.12, intron 1 of 8) 29615 ENSMUSG00000031103.12 ENSMUSG00000031103 ENSMUST00000140486 Elf4 protein_coding Interval_4114 chr1 68991368 68991736 + 0 NA intron (ENSMUSG00000062209.15, intron 1 of 18) protein_coding-intron (ENSMUSG00000062209.15, intron 1 of 27) 115188 ENSMUSG00000087514.1 ENSMUSG00000087514 ENSMUST00000140116 Gm16076 sense_intronic Interval_145039 chr7 29592577 29593219 + 0 NA Intergenic Intergenic -18970 ENSMUSG00000100111.2 ENSMUSG00000100111 ENSMUST00000187265 A330087D11Rik lincRNA Interval_22652 chr11 12521803 12522635 + 0 NA Intergenic Intergenic -110075 ENSMUSG00000020173.17 ENSMUSG00000020173 ENSMUST00000146067 Cobl protein_coding Interval_44498 chr13 45412726 45415073 + 0 NA Intergenic Intergenic -17103 ENSMUSG00000113446.1 ENSMUSG00000113446 ENSMUST00000222635 Gm47455 processed_pseudogene Interval_156056 chr8 43260538 43260726 + 0 NA Intergenic Intergenic 46304 ENSMUSG00000051176.6 ENSMUSG00000051176 ENSMUST00000082120 Zfp42 protein_coding Interval_88524 chr2 5824242 5825236 + 0 NA intron (ENSMUSG00000039128.13, intron 4 of 6) protein_coding-intron (ENSMUSG00000039128.13, intron 4 of 12) -1620 ENSMUSG00000039128.13 ENSMUSG00000039128 ENSMUST00000150876 Cdc123 protein_coding Interval_40725 chr12 107950803 107951508 + 0 NA intron (ENSMUSG00000048251.15, intron 1 of 1) protein_coding-intron (ENSMUSG00000048251.15, intron 3 of 3) 52259 ENSMUSG00000048251.15 ENSMUSG00000048251 ENSMUST00000109891 Bcl11b protein_coding Interval_169173 chr9 95072232 95073180 + 0 NA intron (ENSMUSG00000031129.9, intron 12 of 15) protein_coding-intron (ENSMUSG00000031129.9, intron 12 of 15) -80022 ENSMUSG00000111087.1 ENSMUSG00000111087 ENSMUST00000214362 Gm47168 processed_pseudogene Interval_140400 chr6 117857864 117858471 + 0 NA Intergenic Intergenic -4910 ENSMUSG00000042097.17 ENSMUSG00000042097 ENSMUST00000112857 Zfp239 protein_coding Interval_92047 chr2 52879612 52879811 + 0 NA intron (ENSMUSG00000036053.17, intron 1 of 26) protein_coding-intron (ENSMUSG00000036053.17, intron 1 of 26) 21851 ENSMUSG00000036053.17 ENSMUSG00000036053 ENSMUST00000050719 Fmnl2 protein_coding Interval_72864 chr17 32756814 32757852 + 0 NA Intergenic Intergenic -3135 ENSMUSG00000117443.1 ENSMUSG00000117443 ENSMUST00000234135 Gm50046 lincRNA Interval_29702 chr11 86219192 86219398 + 0 NA intron (ENSMUSG00000018068.13, intron 5 of 5) protein_coding-intron (ENSMUSG00000018068.13, intron 19 of 24) 12881 ENSMUSG00000018068.13 ENSMUSG00000018068 ENSMUST00000141756 Ints2 protein_coding Interval_119775 chr4 139885308 139885598 + 0 NA Intergenic Intergenic -25035 ENSMUSG00000087646.1 ENSMUSG00000087646 ENSMUST00000151651 Gm1667 lincRNA Interval_9472 chr1 157471867 157473200 + 0 NA intron (ENSMUSG00000033488.11, intron 1 of 3) protein_coding-intron (ENSMUSG00000033488.11, intron 9 of 9) 10581 ENSMUSG00000033488.11 ENSMUSG00000033488 ENSMUST00000194220 Cryzl2 protein_coding Interval_36604 chr12 51347713 51348835 + 0 NA promoter-TSS (ENSMUSG00000035293.13) protein_coding-promoter-TSS (ENSMUSG00000035293.13) -22401 ENSMUSG00000035293.13 ENSMUSG00000035293 ENSMUST00000152236 G2e3 protein_coding Interval_81574 chr18 61774406 61775162 + 0 NA intron (ENSMUSG00000033032.15, intron 1 of 15) protein_coding-intron (ENSMUSG00000033032.15, intron 1 of 18) 11827 ENSMUSG00000033032.15 ENSMUSG00000033032 ENSMUST00000147278 Afap1l1 protein_coding Interval_101622 chr3 8004590 8007418 + 0 NA Intergenic Intergenic -51122 ENSMUSG00000100010.5 ENSMUSG00000100010 ENSMUST00000187729 1700010I02Rik lincRNA Interval_132029 chr5 142386869 142388114 + 0 NA Intergenic Intergenic -14006 ENSMUSG00000056493.9 ENSMUSG00000056493 ENSMUST00000072837 Foxk1 protein_coding Interval_102376 chr3 22513161 22513752 + 0 NA Intergenic Intergenic -11782 ENSMUSG00000103801.1 ENSMUSG00000103801 ENSMUST00000192825 Spin3-ps processed_pseudogene Interval_53525 chr14 58184082 58184265 + 0 NA Intergenic Intergenic -56048 ENSMUSG00000114562.1 ENSMUSG00000114562 ENSMUST00000226080 Gm18080 processed_pseudogene Interval_114272 chr4 70381361 70382120 + 0 NA intron (ENSMUSG00000039298.16, intron 3 of 36) protein_coding-intron (ENSMUSG00000039298.16, intron 3 of 33) 28703 ENSMUSG00000039298.16 ENSMUSG00000039298 ENSMUST00000126416 Cdk5rap2 protein_coding Interval_112521 chr4 41772993 41774584 + 0 NA promoter-TSS (ENSMUSG00000073888.13) protein_coding-promoter-TSS (ENSMUSG00000073888.13) 381 ENSMUSG00000073888.13 ENSMUSG00000073888 ENSMUST00000126759 Ccl27a protein_coding Interval_139050 chr6 94596637 94596865 + 0 NA TTS (ENSMUSG00000045100.11) protein_coding-TTS (ENSMUSG00000045100.11) 9664 ENSMUSG00000098531.1 ENSMUSG00000098531 ENSMUST00000183891 Mir7041 miRNA Interval_38148 chr12 75965785 75966830 + 0 NA exon (ENSMUSG00000063450.14, exon 48 of 116) protein_coding-exon (ENSMUSG00000063450.14, exon 48 of 116) 57204 ENSMUSG00000092922.1 ENSMUSG00000092922 ENSMUST00000175181 Mir5101 miRNA Interval_145046 chr7 29699821 29701619 + 0 NA intron (ENSMUSG00000049123.10, intron 23 of 27) protein_coding-intron (ENSMUSG00000049123.10, intron 24 of 28) 24749 ENSMUSG00000049123.10 ENSMUSG00000049123 ENSMUST00000207130 Catsperg2 protein_coding Interval_165279 chr9 45993610 45994054 + 0 NA intron (ENSMUSG00000003131.7, intron 1 of 3) protein_coding-intron (ENSMUSG00000003131.7, intron 1 of 3) -9049 ENSMUSG00000003131.7 ENSMUSG00000003131 ENSMUST00000214996 Pafah1b2 protein_coding Interval_137617 chr6 75970642 75971424 + 0 NA intron (ENSMUSG00000107880.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000107880.1, intron 1 of 1) 3950 ENSMUSG00000107880.1 ENSMUSG00000107880 ENSMUST00000203510 Gm44113 lincRNA Interval_10122 chr1 165922782 165923294 + 0 NA intron (ENSMUSG00000026565.18, intron 2 of 16) protein_coding-intron (ENSMUSG00000026565.18, intron 2 of 14) -18580 ENSMUSG00000099008.1 ENSMUSG00000099008 ENSMUST00000184037 Gm17976 processed_pseudogene Interval_34173 chr11 121097397 121097730 + 0 NA promoter-TSS (ENSMUSG00000084853.1) lincRNA-promoter-TSS (ENSMUSG00000084853.1) -356 ENSMUSG00000084853.1 ENSMUSG00000084853 ENSMUST00000139327 Gm11791 lincRNA Interval_137409 chr6 71962955 71963262 + 0 NA exon (ENSMUSG00000097133.1, exon 1 of 3) antisense-exon (ENSMUSG00000097133.1, exon 1 of 3) 667 ENSMUSG00000097133.1 ENSMUSG00000097133 ENSMUST00000181028 Gm26628 antisense Interval_48783 chr13 103203546 103204049 + 0 NA intron (ENSMUSG00000034751.17, intron 1 of 3) protein_coding-intron (ENSMUSG00000034751.17, intron 1 of 4) -42959 ENSMUSG00000091577.2 ENSMUSG00000091577 ENSMUST00000167849 Gm6211 transcribed_processed_pseudogene Interval_5340 chr1 87716297 87716557 + 0 NA intron (ENSMUSG00000026288.14, intron 21 of 22) protein_coding-intron (ENSMUSG00000026288.14, intron 25 of 26) -39661 ENSMUSG00000026289.15 ENSMUSG00000026289 ENSMUST00000127884 Atg16l1 protein_coding Interval_20427 chr10 117514804 117516695 + 0 NA Intergenic Intergenic -43375 ENSMUSG00000112399.1 ENSMUSG00000112399 ENSMUST00000220286 Gm32235 lincRNA Interval_139688 chr6 107058968 107060666 + 0 NA Intergenic Intergenic 34298 ENSMUSG00000107981.1 ENSMUSG00000107981 ENSMUST00000203999 Gm6064 processed_pseudogene Interval_124840 chr5 56259454 56260707 + 0 NA Intergenic Intergenic 102742 ENSMUSG00000105685.1 ENSMUSG00000105685 ENSMUST00000198120 Gm43315 processed_pseudogene Interval_62985 chr15 98504388 98505041 + 0 NA Intergenic Intergenic 5309 ENSMUSG00000108805.1 ENSMUSG00000108805 ENSMUST00000205676 Olfr278-ps1 unprocessed_pseudogene Interval_5683 chr1 90896463 90897272 + 0 NA Intergenic Intergenic -25448 ENSMUSG00000103978.1 ENSMUSG00000103978 ENSMUST00000194161 4930474B08Rik TEC Interval_56060 chr14 105229930 105230176 + 0 NA Intergenic Intergenic -19957 ENSMUSG00000094275.1 ENSMUSG00000094275 ENSMUST00000177655 Gm22290 snRNA Interval_125219 chr5 65441144 65442155 + 0 NA intron (ENSMUSG00000105835.1, intron 2 of 2) protein_coding-intron (ENSMUSG00000105835.1, intron 2 of 2) -10069 ENSMUSG00000104917.1 ENSMUSG00000104917 ENSMUST00000200537 Gm43289 TEC Interval_130358 chr5 126670167 126671312 + 0 NA Intergenic Intergenic -36175 ENSMUSG00000105673.1 ENSMUSG00000105673 ENSMUST00000197352 1700081B01Rik lincRNA Interval_104974 chr3 79440706 79441031 + 0 NA intron (ENSMUSG00000091685.6, intron 3 of 4) protein_coding-intron (ENSMUSG00000091685.6, intron 3 of 4) 91008 ENSMUSG00000061175.12 ENSMUSG00000061175 ENSMUST00000139171 Fnip2 protein_coding Interval_63021 chr15 98686166 98686387 + 0 NA Intergenic Intergenic -8818 ENSMUSG00000054855.13 ENSMUSG00000054855 ENSMUST00000120997 Rnd1 protein_coding Interval_124111 chr5 38422202 38423131 + 0 NA intron (ENSMUSG00000005107.13, intron 7 of 13) protein_coding-intron (ENSMUSG00000005107.13, intron 6 of 10) 57516 ENSMUSG00000005107.13 ENSMUSG00000005107 ENSMUST00000156076 Slc2a9 protein_coding Interval_113169 chr4 48842990 48843409 + 0 NA Intergenic Intergenic -53300 ENSMUSG00000077417.1 ENSMUSG00000077417 ENSMUST00000104229 Gm23746 snoRNA Interval_69879 chr16 97828152 97828341 + 0 NA intron (ENSMUSG00000014039.18, intron 5 of 22) protein_coding-intron (ENSMUSG00000014039.18, intron 6 of 23) 27118 ENSMUSG00000116863.1 ENSMUSG00000116863 ENSMUST00000231602 Gm49592 processed_pseudogene Interval_62871 chr15 97606461 97607355 + 0 NA Intergenic Intergenic -48618 ENSMUSG00000116131.1 ENSMUSG00000116131 ENSMUST00000230522 Gm49506 processed_pseudogene Interval_29766 chr11 86655670 86656387 + 0 NA intron (ENSMUSG00000018171.9, intron 2 of 2) protein_coding-intron (ENSMUSG00000018171.9, intron 5 of 11) -25002 ENSMUSG00000083992.1 ENSMUSG00000083992 ENSMUST00000117851 Gm11478 processed_pseudogene Interval_71143 chr17 20002470 20002701 + 0 NA Intergenic Intergenic -14787 ENSMUSG00000093711.1 ENSMUSG00000093711 ENSMUST00000176234 Vmn2r-ps125 unprocessed_pseudogene Interval_74913 chr17 57258646 57258982 + 0 NA intron (ENSMUSG00000019487.11, intron 10 of 13) protein_coding-intron (ENSMUSG00000019487.11, intron 10 of 13) 9108 ENSMUSG00000118457.1 ENSMUSG00000118457 ENSMUST00000238696 Gm46575 unitary_pseudogene Interval_154375 chr8 15108576 15109504 + 0 NA TTS (ENSMUSG00000031461.4) protein_coding-TTS (ENSMUSG00000031461.4) -7690 ENSMUSG00000083000.1 ENSMUSG00000083000 ENSMUST00000117573 Gm15678 processed_pseudogene Interval_163181 chr9 17196627 17197079 + 0 NA Intergenic Intergenic 166808 ENSMUSG00000090602.3 ENSMUSG00000090602 ENSMUST00000164523 Gm5611 processed_pseudogene Interval_49137 chr13 108374831 108375053 + 0 NA TTS (ENSMUSG00000021697.12) protein_coding-TTS (ENSMUSG00000021697.12) 17516 ENSMUSG00000021697.12 ENSMUSG00000021697 ENSMUST00000172402 Depdc1b protein_coding Interval_99350 chr2 160000401 160000691 + 0 NA Intergenic Intergenic -16107 ENSMUSG00000086653.1 ENSMUSG00000086653 ENSMUST00000140319 9130015L21Rik lincRNA Interval_93257 chr2 71528578 71530352 + 0 NA promoter-TSS (ENSMUSG00000041911.3) protein_coding-promoter-TSS (ENSMUSG00000041911.3) -1315 ENSMUSG00000041911.3 ENSMUSG00000041911 ENSMUST00000172629 Dlx1 protein_coding Interval_17649 chr10 78470686 78471308 + 0 NA exon (ENSMUSG00000112623.1, exon 1 of 1) TEC-exon (ENSMUSG00000112623.1, exon 1 of 1) 259 ENSMUSG00000112623.1 ENSMUSG00000112623 ENSMUST00000217736 4933436P19Rik TEC Interval_68108 chr16 65169085 65169789 + 0 NA TTS (ENSMUSG00000089178.1) snoRNA-TTS (ENSMUSG00000089178.1) 733 ENSMUSG00000089178.1 ENSMUSG00000089178 ENSMUST00000158553 Gm22429 snoRNA Interval_133692 chr6 8742799 8743081 + 0 NA intron (ENSMUSG00000062995.12, intron 3 of 10) protein_coding-intron (ENSMUSG00000062995.12, intron 4 of 13) 15459 ENSMUSG00000062995.12 ENSMUSG00000062995 ENSMUST00000151758 Ica1 protein_coding Interval_164658 chr9 40375858 40376993 + 0 NA promoter-TSS (ENSMUSG00000040111.17) protein_coding-promoter-TSS (ENSMUSG00000040111.17) -9523 ENSMUSG00000110928.1 ENSMUSG00000110928 ENSMUST00000214407 Gm48114 TEC Interval_169569 chr9 99180128 99181060 + 0 NA Intergenic Intergenic 39973 ENSMUSG00000101498.1 ENSMUSG00000101498 ENSMUST00000185530 Gm2950 processed_pseudogene Interval_130496 chr5 128404366 128405320 + 0 NA intron (ENSMUSG00000034310.8, intron 1 of 8) protein_coding-intron (ENSMUSG00000034310.8, intron 1 of 8) -39573 ENSMUSG00000106275.1 ENSMUSG00000106275 ENSMUST00000200324 Gm42495 lincRNA Interval_103379 chr3 41045456 41046023 + 0 NA Intergenic Intergenic 24931 ENSMUSG00000049940.7 ENSMUSG00000049940 ENSMUST00000124636 Pgrmc2 protein_coding Interval_68247 chr16 70982873 70983419 + 0 NA intron (ENSMUSG00000116800.1, intron 4 of 7) lincRNA-intron (ENSMUSG00000116800.1, intron 4 of 7) 28858 ENSMUSG00000116800.1 ENSMUSG00000116800 ENSMUST00000232603 Gm29823 lincRNA Interval_35371 chr12 21133958 21134979 + 0 NA intron (ENSMUSG00000052632.16, intron 1 of 27) protein_coding-intron (ENSMUSG00000052632.16, intron 1 of 26) 91509 ENSMUSG00000092229.3 ENSMUSG00000092229 ENSMUST00000174304 Gm5977 transcribed_unprocessed_pseudogene Interval_169943 chr9 103119957 103120473 + 0 NA promoter-TSS (ENSMUSG00000102461.1) TEC-promoter-TSS (ENSMUSG00000102461.1) -153 ENSMUSG00000102461.1 ENSMUSG00000102461 ENSMUST00000195473 Gm37166 TEC Interval_106529 chr3 96992537 96992983 + 0 NA intron (ENSMUSG00000057123.14, intron 2 of 3) protein_coding-intron (ENSMUSG00000057123.14, intron 2 of 3) 8011 ENSMUSG00000105385.1 ENSMUSG00000105385 ENSMUST00000200375 9230114J08Rik antisense Interval_62182 chr15 88643904 88644296 + 0 NA Intergenic Intergenic 43798 ENSMUSG00000054117.8 ENSMUSG00000054117 ENSMUST00000066949 Zdhhc25 protein_coding Interval_90990 chr2 33973290 33973847 + 0 NA Intergenic Intergenic -4678 ENSMUSG00000086904.1 ENSMUSG00000086904 ENSMUST00000156633 Gm13404 lincRNA Interval_13214 chr10 13118804 13119085 + 0 NA intron (ENSMUSG00000019817.18, intron 6 of 7) protein_coding-intron (ENSMUSG00000019817.18, intron 6 of 8) -27127 ENSMUSG00000098635.1 ENSMUSG00000098635 ENSMUST00000185060 Gm27741 misc_RNA Interval_62504 chr15 93564585 93565020 + 0 NA intron (ENSMUSG00000036158.12, intron 1 of 7) protein_coding-intron (ENSMUSG00000036158.12, intron 1 of 7) -45279 ENSMUSG00000036158.12 ENSMUSG00000036158 ENSMUST00000048982 Prickle1 protein_coding Interval_148857 chr7 89338236 89339295 + 0 NA promoter-TSS (ENSMUSG00000039428.11) protein_coding-promoter-TSS (ENSMUSG00000039428.11) 395 ENSMUSG00000109327.1 ENSMUSG00000109327 ENSMUST00000207056 Gm44995 antisense Interval_53429 chr14 57376969 57377418 + 0 NA intron (ENSMUSG00000021947.11, intron 1 of 3) protein_coding-intron (ENSMUSG00000021947.11, intron 2 of 7) 8057 ENSMUSG00000114952.1 ENSMUSG00000114952 ENSMUST00000225457 Gm29717 processed_pseudogene Interval_119614 chr4 138739037 138739852 + 0 NA intron (ENSMUSG00000028750.12, intron 5 of 5) protein_coding-intron (ENSMUSG00000028750.12, intron 5 of 5) 14119 ENSMUSG00000028750.12 ENSMUSG00000028750 ENSMUST00000030530 Pla2g2c protein_coding Interval_104402 chr3 65319466 65319683 + 0 NA intron (ENSMUSG00000027827.17, intron 8 of 13) protein_coding-intron (ENSMUSG00000027827.17, intron 8 of 13) -16889 ENSMUSG00000104093.1 ENSMUSG00000104093 ENSMUST00000195489 A330015K06Rik antisense Interval_128978 chr5 116422360 116423293 + 0 NA promoter-TSS (ENSMUSG00000041548.4) protein_coding-promoter-TSS (ENSMUSG00000041548.4) -6934 ENSMUSG00000041548.4 ENSMUSG00000041548 ENSMUST00000133335 Hspb8 protein_coding Interval_73051 chr17 34410814 34411913 + 0 NA intron (ENSMUSG00000057246.16, intron 1 of 3) protein_coding-intron (ENSMUSG00000057246.16, intron 1 of 19) -9345 ENSMUSG00000082103.2 ENSMUSG00000082103 ENSMUST00000118085 Gm15320 transcribed_unprocessed_pseudogene Interval_79598 chr18 33938501 33938767 + 0 NA intron (ENSMUSG00000024376.7, intron 2 of 2) protein_coding-intron (ENSMUSG00000024376.7, intron 2 of 23) 68332 ENSMUSG00000024376.7 ENSMUSG00000024376 ENSMUST00000237971 Epb41l4a protein_coding Interval_15838 chr10 58312875 58313308 + 0 NA Intergenic Intergenic 36513 ENSMUSG00000070214.1 ENSMUSG00000070214 ENSMUST00000093703 Gm23058 snRNA Interval_90354 chr2 29934843 29935831 + 0 NA promoter-TSS (ENSMUSG00000019715.14) protein_coding-promoter-TSS (ENSMUSG00000019715.14) -91 ENSMUSG00000019715.14 ENSMUSG00000019715 ENSMUST00000127390 Gle1 protein_coding Interval_20076 chr10 113389059 113389415 + 0 NA Intergenic Intergenic -34947 ENSMUSG00000112767.1 ENSMUSG00000112767 ENSMUST00000218916 Gm47532 lincRNA Interval_173747 chrX 103437532 103438917 + 0 NA intron (ENSMUSG00000085715.2, intron 1 of 3) antisense-intron (ENSMUSG00000085715.2, intron 1 of 3) -9498 ENSMUSG00000085715.2 ENSMUSG00000085715 ENSMUST00000211291 Tsix antisense Interval_99500 chr2 162658829 162661735 + 0 NA promoter-TSS (ENSMUSG00000054457.5) processed_transcript-promoter-TSS (ENSMUSG00000054457.5) -881 ENSMUSG00000054457.5 ENSMUSG00000054457 ENSMUST00000145985 9430021M05Rik processed_transcript Interval_25079 chr11 43719276 43721095 + 0 NA intron (ENSMUSG00000044950.7, intron 1 of 1) protein_coding-intron (ENSMUSG00000044950.7, intron 3 of 3) 27807 ENSMUSG00000041278.10 ENSMUSG00000041278 ENSMUST00000147984 Ttc1 protein_coding Interval_20820 chr10 121293484 121294740 + 0 NA TTS (ENSMUSG00000052302.6) protein_coding-TTS (ENSMUSG00000052302.6) -49064 ENSMUSG00000111940.1 ENSMUSG00000111940 ENSMUST00000218322 Gm4478 processed_pseudogene Interval_121097 chr4 152994165 152994656 + 0 NA Intergenic Intergenic 19174 ENSMUSG00000080360.1 ENSMUSG00000080360 ENSMUST00000116710 Gm25779 miRNA Interval_144162 chr7 19735290 19736418 + 0 NA intron (ENSMUSG00000062300.14, intron 2 of 5) protein_coding-intron (ENSMUSG00000062300.14, intron 2 of 8) 14629 ENSMUSG00000062300.14 ENSMUSG00000062300 ENSMUST00000207271 Nectin2 protein_coding Interval_95263 chr2 105367575 105367860 + 0 NA intron (ENSMUSG00000055312.2, intron 2 of 2) protein_coding-intron (ENSMUSG00000055312.2, intron 3 of 3) 27631 ENSMUSG00000005973.6 ENSMUSG00000005973 ENSMUST00000127019 Rcn1 protein_coding Interval_66376 chr16 33475458 33476962 + 0 NA intron (ENSMUSG00000022811.17, intron 6 of 7) protein_coding-intron (ENSMUSG00000022811.17, intron 7 of 8) 95347 ENSMUSG00000022811.17 ENSMUSG00000022811 ENSMUST00000089677 Zfp148 protein_coding Interval_155216 chr8 27760498 27760664 + 0 NA TTS (ENSMUSG00000064882.1) snRNA-TTS (ENSMUSG00000064882.1) 530 ENSMUSG00000064882.1 ENSMUSG00000064882 ENSMUST00000082948 Gm24202 snRNA Interval_54227 chr14 66575395 66575703 + 0 NA Intergenic Intergenic 16146 ENSMUSG00000088737.1 ENSMUSG00000088737 ENSMUST00000158112 Gm23899 rRNA Interval_18385 chr10 85466851 85467920 + 0 NA intron (ENSMUSG00000020042.15, intron 1 of 16) protein_coding-intron (ENSMUSG00000020042.15, intron 1 of 9) 133484 ENSMUSG00000087895.1 ENSMUSG00000087895 ENSMUST00000157270 Gm25281 miRNA Interval_131604 chr5 138709673 138710157 + 0 NA Intergenic Intergenic -15480 ENSMUSG00000103298.1 ENSMUSG00000103298 ENSMUST00000193602 Gm38232 TEC Interval_9844 chr1 162938988 162939361 + 0 NA Intergenic Intergenic -1659 ENSMUSG00000095576.5 ENSMUSG00000095576 ENSMUST00000178465 Fmo6 protein_coding Interval_170749 chr9 110521754 110521983 + 0 NA exon (ENSMUSG00000032489.17, exon 20 of 20) protein_coding-exon (ENSMUSG00000032489.17, exon 20 of 20) -21343 ENSMUSG00000104983.1 ENSMUSG00000104983 ENSMUST00000199595 Gm42763 TEC Interval_64994 chr16 17743226 17743546 + 0 NA Intergenic Intergenic 9217 ENSMUSG00000116936.1 ENSMUSG00000116936 ENSMUST00000231811 Bod1-ps processed_pseudogene Interval_118075 chr4 128793839 128794335 + 0 NA intron (ENSMUSG00000028799.15, intron 1 of 6) protein_coding-intron (ENSMUSG00000028799.15, intron 1 of 7) 11958 ENSMUSG00000028799.15 ENSMUSG00000028799 ENSMUST00000138371 Zfp362 protein_coding Interval_26575 chr11 58994191 58995029 + 0 NA intron (ENSMUSG00000061462.18, intron 114 of 114) protein_coding-intron (ENSMUSG00000061462.18, intron 103 of 103) -8300 ENSMUSG00000072902.4 ENSMUSG00000072902 ENSMUST00000101162 Gm10435 antisense Interval_57880 chr15 24530008 24530588 + 0 NA Intergenic Intergenic 75180 ENSMUSG00000115004.1 ENSMUSG00000115004 ENSMUST00000226982 Gm48920 processed_pseudogene Interval_63172 chr15 99544023 99544862 + 0 NA Intergenic Intergenic 11750 ENSMUSG00000096448.2 ENSMUSG00000096448 ENSMUST00000178090 Gm5808 processed_pseudogene Interval_170077 chr9 104262304 104263492 + 0 NA promoter-TSS (ENSMUSG00000032560.14) protein_coding-promoter-TSS (ENSMUSG00000032560.14) 793 ENSMUSG00000104040.1 ENSMUSG00000104040 ENSMUST00000192580 Gm37563 TEC Interval_170201 chr9 106159741 106160470 + 0 NA TTS (ENSMUSG00000086296.2) antisense-TTS (ENSMUSG00000086296.2) -2855 ENSMUSG00000020258.16 ENSMUSG00000020258 ENSMUST00000159809 Glyctk protein_coding Interval_114067 chr4 62944417 62944952 + 0 NA Intergenic Intergenic 4772 ENSMUSG00000083635.1 ENSMUSG00000083635 ENSMUST00000120214 Gm11480 processed_pseudogene Interval_53861 chr14 62871677 62872332 + 0 NA intron (ENSMUSG00000014547.10, intron 1 of 3) protein_coding-intron (ENSMUSG00000014547.10, intron 1 of 11) 2290 ENSMUSG00000084465.1 ENSMUSG00000084465 ENSMUST00000122516 n-R5s47 rRNA Interval_43640 chr13 34344039 34345949 + 0 NA promoter-TSS (ENSMUSG00000038267.15) protein_coding-promoter-TSS (ENSMUSG00000038267.15) -543 ENSMUSG00000038267.15 ENSMUSG00000038267 ENSMUST00000143353 Slc22a23 protein_coding Interval_126274 chr5 85897141 85897511 + 0 NA Intergenic Intergenic 67699 ENSMUSG00000064555.1 ENSMUSG00000064555 ENSMUST00000082621 Gm24626 snRNA Interval_35511 chr12 24086586 24087871 + 0 NA intron (ENSMUSG00000073158.4, intron 1 of 3) protein_coding-intron (ENSMUSG00000073158.4, intron 1 of 3) 10018 ENSMUSG00000073158.4 ENSMUSG00000073158 ENSMUST00000101538 9030624G23Rik protein_coding Interval_48038 chr13 95470967 95471267 + 0 NA Intergenic Intergenic 7604 ENSMUSG00000021679.4 ENSMUSG00000021679 ENSMUST00000022186 S100z protein_coding Interval_130980 chr5 134380574 134380943 + 0 NA intron (ENSMUSG00000023079.14, intron 18 of 27) protein_coding-intron (ENSMUSG00000023079.14, intron 19 of 30) -3734 ENSMUSG00000023079.14 ENSMUSG00000023079 ENSMUST00000201647 Gtf2ird1 protein_coding Interval_59013 chr15 41693333 41693982 + 0 NA intron (ENSMUSG00000022307.16, intron 3 of 15) protein_coding-intron (ENSMUSG00000022307.16, intron 3 of 15) 95254 ENSMUSG00000097232.1 ENSMUSG00000097232 ENSMUST00000180418 Gm26854 antisense Interval_10133 chr1 165994069 165994711 + 0 NA intron (ENSMUSG00000026565.18, intron 1 of 6) protein_coding-intron (ENSMUSG00000026565.18, intron 1 of 14) -8570 ENSMUSG00000097196.2 ENSMUSG00000097196 ENSMUST00000181378 Gm26665 lincRNA Interval_9851 chr1 163143082 163143869 + 0 NA Intergenic Intergenic 25248 ENSMUSG00000089174.1 ENSMUSG00000089174 ENSMUST00000158549 Gm22434 snoRNA Interval_148708 chr7 84409229 84410625 + 0 NA promoter-TSS (ENSMUSG00000015709.9) protein_coding-promoter-TSS (ENSMUSG00000015709.9) 29299 ENSMUSG00000108864.1 ENSMUSG00000108864 ENSMUST00000208637 Gm44933 lincRNA Interval_133278 chr5 151054370 151056421 + 0 NA intron (ENSMUSG00000016128.14, intron 7 of 13) protein_coding-intron (ENSMUSG00000016128.14, intron 7 of 13) -46094 ENSMUSG00000106963.1 ENSMUSG00000106963 ENSMUST00000201408 Gm8675 processed_pseudogene Interval_174830 chrX 168672552 168674598 + 0 NA intron (ENSMUSG00000031358.17, intron 1 of 12) protein_coding-intron (ENSMUSG00000031358.17, intron 1 of 12) -14557 ENSMUSG00000031358.17 ENSMUSG00000031358 ENSMUST00000129860 Msl3 protein_coding Interval_12182 chr1 190656228 190656420 + 0 NA Intergenic Intergenic 61998 ENSMUSG00000103963.1 ENSMUSG00000103963 ENSMUST00000191893 Gm30932 lincRNA Interval_32187 chr11 106001694 106001995 + 0 NA intron (ENSMUSG00000101605.1, intron 12 of 13) protein_coding-intron (ENSMUSG00000101605.1, intron 12 of 13) -6359 ENSMUSG00000001901.15 ENSMUSG00000001901 ENSMUST00000140695 Kcnh6 protein_coding Interval_123725 chr5 34915769 34918111 + 0 NA promoter-TSS (ENSMUSG00000051246.3) protein_coding-promoter-TSS (ENSMUSG00000051246.3) 1852 ENSMUSG00000051246.3 ENSMUSG00000051246 ENSMUST00000202205 Msantd1 protein_coding Interval_155738 chr8 36592619 36594510 + 0 NA intron (ENSMUSG00000031523.16, intron 6 of 17) protein_coding-intron (ENSMUSG00000031523.16, intron 2 of 13) 104373 ENSMUSG00000039620.17 ENSMUSG00000039620 ENSMUST00000125492 Trmt9b protein_coding Interval_45545 chr13 55743729 55745552 + 0 NA intron (ENSMUSG00000021496.12, intron 2 of 3) protein_coding-intron (ENSMUSG00000021496.12, intron 2 of 3) 17272 ENSMUSG00000021496.12 ENSMUSG00000021496 ENSMUST00000124968 Pcbd2 protein_coding Interval_156411 chr8 47973833 47975348 + 0 NA intron (ENSMUSG00000031563.8, intron 1 of 22) protein_coding-intron (ENSMUSG00000031563.8, intron 1 of 22) 16334 ENSMUSG00000031563.8 ENSMUSG00000031563 ENSMUST00000212282 Wwc2 protein_coding Interval_154082 chr8 12545163 12546301 + 0 NA Intergenic Intergenic -27297 ENSMUSG00000010435.7 ENSMUSG00000010435 ENSMUST00000209428 Spaca7 protein_coding Interval_103771 chr3 52574118 52574373 + 0 NA Intergenic Intergenic -38590 ENSMUSG00000070490.4 ENSMUSG00000070490 ENSMUST00000076317 Gm10293 processed_pseudogene Interval_21058 chr10 125679774 125680327 + 0 NA Intergenic Intergenic 167519 ENSMUSG00000112100.1 ENSMUSG00000112100 ENSMUST00000219250 Gm9102 processed_pseudogene Interval_57279 chr15 8382392 8382991 + 0 NA intron (ENSMUSG00000022141.7, intron 1 of 46) protein_coding-intron (ENSMUSG00000022141.7, intron 1 of 46) 61772 ENSMUSG00000022141.7 ENSMUSG00000022141 ENSMUST00000052965 Nipbl protein_coding Interval_115994 chr4 106865794 106867274 + 0 NA Intergenic Intergenic -18614 ENSMUSG00000086940.1 ENSMUSG00000086940 ENSMUST00000151369 Gm12746 lincRNA Interval_89268 chr2 18676296 18678133 + 0 NA promoter-TSS (ENSMUSG00000026739.13) protein_coding-promoter-TSS (ENSMUSG00000026739.13) -3160 ENSMUSG00000026739.13 ENSMUSG00000026739 ENSMUST00000147365 Bmi1 protein_coding Interval_128268 chr5 112182712 112183423 + 0 NA Intergenic Intergenic -23739 ENSMUSG00000101683.6 ENSMUSG00000101683 ENSMUST00000187272 1700028D13Rik lincRNA Interval_93023 chr2 69638112 69638369 + 0 NA Intergenic Intergenic -8990 ENSMUSG00000063145.10 ENSMUSG00000063145 ENSMUST00000127806 Bbs5 protein_coding Interval_7218 chr1 127940255 127940588 + 0 NA intron (ENSMUSG00000036104.12, intron 23 of 23) protein_coding-intron (ENSMUSG00000036104.12, intron 23 of 23) -19095 ENSMUSG00000099760.1 ENSMUSG00000099760 ENSMUST00000186230 Gm28800 antisense Interval_19315 chr10 96630213 96631543 + 0 NA Intergenic Intergenic 13324 ENSMUSG00000036478.8 ENSMUSG00000036478 ENSMUST00000218953 Btg1 protein_coding Interval_24786 chr11 37827494 37827847 + 0 NA Intergenic Intergenic 168681 ENSMUSG00000087388.1 ENSMUSG00000087388 ENSMUST00000131013 Gm12128 lincRNA Interval_14082 chr10 26679706 26680012 + 0 NA Intergenic Intergenic -5247 ENSMUSG00000098179.1 ENSMUSG00000098179 ENSMUST00000183230 Gm8709 processed_pseudogene Interval_1917 chr1 34536400 34537733 + 0 NA intron (ENSMUSG00000026124.4, intron 3 of 5) protein_coding-intron (ENSMUSG00000026124.4, intron 3 of 5) 1418 ENSMUSG00000026124.4 ENSMUSG00000026124 ENSMUST00000027298 Cfc1 protein_coding Interval_10083 chr1 165672396 165672703 + 0 NA intron (ENSMUSG00000040723.14, intron 2 of 2) protein_coding-intron (ENSMUSG00000040723.14, intron 1 of 6) -22216 ENSMUSG00000105249.1 ENSMUSG00000105249 ENSMUST00000196594 Gm44458 miRNA Interval_63259 chr15 99980803 99981129 + 0 NA intron (ENSMUSG00000023025.16, intron 1 of 15) protein_coding-intron (ENSMUSG00000023025.16, intron 1 of 15) -7679 ENSMUSG00000100084.2 ENSMUSG00000100084 ENSMUST00000188271 2310068J16Rik antisense Interval_26852 chr11 61076628 61077631 + 0 NA Intergenic Intergenic 11325 ENSMUSG00000042529.14 ENSMUSG00000042529 ENSMUST00000108717 Kcnj12 protein_coding Interval_36777 chr12 53706885 53707228 + 0 NA intron (ENSMUSG00000021010.9, intron 3 of 10) protein_coding-intron (ENSMUSG00000021010.9, intron 4 of 11) 372336 ENSMUSG00000099407.1 ENSMUSG00000099407 ENSMUST00000185390 1700060O08Rik antisense Interval_79476 chr18 32174882 32175114 + 0 NA intron (ENSMUSG00000024383.9, intron 1 of 6) protein_coding-intron (ENSMUSG00000024383.9, intron 1 of 16) 11905 ENSMUSG00000024383.9 ENSMUSG00000024383 ENSMUST00000096575 Map3k2 protein_coding Interval_61751 chr15 83822820 83823406 + 0 NA intron (ENSMUSG00000041708.12, intron 2 of 4) protein_coding-intron (ENSMUSG00000041708.12, intron 3 of 6) 31099 ENSMUSG00000041708.12 ENSMUSG00000041708 ENSMUST00000148868 Mpped1 protein_coding Interval_143119 chr6 149471195 149472342 + 0 NA intron (ENSMUSG00000003452.15, intron 1 of 9) protein_coding-intron (ENSMUSG00000003452.15, intron 1 of 9) -37295 ENSMUSG00000082072.1 ENSMUSG00000082072 ENSMUST00000119145 Gm15785 processed_pseudogene Interval_134687 chr6 30381059 30381577 + 0 NA intron (ENSMUSG00000039130.18, intron 4 of 9) protein_coding-intron (ENSMUSG00000039130.18, intron 4 of 9) 2217 ENSMUSG00000065662.1 ENSMUSG00000065662 ENSMUST00000083728 n-R5s161 rRNA Interval_34509 chr12 4793670 4794312 + 0 NA Intergenic Intergenic 11821 ENSMUSG00000091269.2 ENSMUSG00000091269 ENSMUST00000169666 Gm6682 processed_pseudogene Interval_33400 chr11 116354330 116355000 + 0 NA exon (ENSMUSG00000052949.14, exon 10 of 19) protein_coding-exon (ENSMUSG00000052949.14, exon 10 of 19) -6747 ENSMUSG00000052949.14 ENSMUSG00000052949 ENSMUST00000149682 Rnf157 protein_coding Interval_4471 chr1 74408588 74409155 + 0 NA promoter-TSS (ENSMUSG00000026175.12) protein_coding-promoter-TSS (ENSMUSG00000026175.12) 14561 ENSMUSG00000065468.1 ENSMUSG00000065468 ENSMUST00000083534 Mir26b miRNA Interval_97049 chr2 130790168 130790364 + 0 NA intron (ENSMUSG00000027309.18, intron 10 of 20) protein_coding-intron (ENSMUSG00000027309.18, intron 10 of 36) 13716 ENSMUSG00000089662.1 ENSMUSG00000089662 ENSMUST00000120631 Gm14057 transcribed_processed_pseudogene Interval_136730 chr6 58674889 58675346 + 0 NA intron (ENSMUSG00000029802.13, intron 1 of 4) protein_coding-intron (ENSMUSG00000029802.13, intron 9 of 15) 34535 ENSMUSG00000029802.13 ENSMUSG00000029802 ENSMUST00000134426 Abcg2 protein_coding Interval_98174 chr2 149319136 149319452 + 0 NA Intergenic Intergenic 15495 ENSMUSG00000081314.1 ENSMUSG00000081314 ENSMUST00000117188 Gm14132 processed_pseudogene Interval_168023 chr9 75446870 75447425 + 0 NA exon (ENSMUSG00000042487.6, exon 3 of 12) protein_coding-exon (ENSMUSG00000042487.6, exon 3 of 12) 5623 ENSMUSG00000042487.6 ENSMUSG00000042487 ENSMUST00000213248 Leo1 protein_coding Interval_5883 chr1 92933990 92935095 + 0 NA promoter-TSS (ENSMUSG00000026270.11) protein_coding-promoter-TSS (ENSMUSG00000026270.11) -5917 ENSMUSG00000026270.11 ENSMUSG00000026270 ENSMUST00000136598 Capn10 protein_coding Interval_149658 chr7 100455116 100456320 + 0 NA TTS (ENSMUSG00000047248.20) protein_coding-TTS (ENSMUSG00000047248.20) -2742 ENSMUSG00000102241.1 ENSMUSG00000102241 ENSMUST00000193553 Gm37716 TEC Interval_108978 chr3 133820358 133820747 + 0 NA Intergenic Intergenic -2034 ENSMUSG00000104645.1 ENSMUSG00000104645 ENSMUST00000200327 Gm30484 lincRNA Interval_128596 chr5 114217878 114218084 + 0 NA intron (ENSMUSG00000042010.16, intron 15 of 40) protein_coding-intron (ENSMUSG00000042010.16, intron 26 of 51) 19944 ENSMUSG00000084243.1 ENSMUSG00000084243 ENSMUST00000119639 Gm13784 processed_pseudogene Interval_31276 chr11 99284582 99285150 + 0 NA exon (ENSMUSG00000020913.3, exon 1 of 8) protein_coding-exon (ENSMUSG00000020913.3, exon 1 of 8) 396 ENSMUSG00000020913.3 ENSMUSG00000020913 ENSMUST00000017255 Krt24 protein_coding Interval_52613 chr14 47939970 47940331 + 0 NA intron (ENSMUSG00000115609.1, intron 2 of 3) lincRNA-intron (ENSMUSG00000115609.1, intron 2 of 3) -19869 ENSMUSG00000114989.1 ENSMUSG00000114989 ENSMUST00000228393 Gm49303 lincRNA Interval_11484 chr1 182140155 182141458 + 0 NA Intergenic Intergenic 10107 ENSMUSG00000026511.7 ENSMUSG00000026511 ENSMUST00000193005 Srp9 protein_coding Interval_112535 chr4 42949363 42950683 + 0 NA promoter-TSS (ENSMUSG00000036052.14) protein_coding-promoter-TSS (ENSMUSG00000036052.14) -417 ENSMUSG00000036052.14 ENSMUSG00000036052 ENSMUST00000107973 Dnajb5 protein_coding Interval_80022 chr18 36693395 36693814 + 0 NA promoter-TSS (ENSMUSG00000044719.5) protein_coding-promoter-TSS (ENSMUSG00000044719.5) -31 ENSMUSG00000044719.5 ENSMUSG00000044719 ENSMUST00000235134 E230025N22Rik protein_coding Interval_80859 chr18 49527126 49527924 + 0 NA Intergenic Intergenic 4236 ENSMUSG00000100297.1 ENSMUSG00000100297 ENSMUST00000190201 1700044K03Rik lincRNA Interval_169727 chr9 100736043 100737280 + 0 NA intron (ENSMUSG00000037286.15, intron 3 of 8) protein_coding-intron (ENSMUSG00000037286.15, intron 3 of 32) 33448 ENSMUSG00000104272.1 ENSMUSG00000104272 ENSMUST00000195122 Gm38297 TEC Interval_157692 chr8 72322934 72323257 + 0 NA Intergenic Intergenic 4062 ENSMUSG00000055148.7 ENSMUSG00000055148 ENSMUST00000067912 Klf2 protein_coding Interval_39288 chr12 86481838 86482185 + 0 NA intron (ENSMUSG00000021255.17, intron 1 of 5) protein_coding-intron (ENSMUSG00000021255.17, intron 2 of 6) 11894 ENSMUSG00000021255.17 ENSMUSG00000021255 ENSMUST00000136464 Esrrb protein_coding Interval_80660 chr18 45662089 45663291 + 0 NA intron (ENSMUSG00000054477.16, intron 1 of 3) protein_coding-intron (ENSMUSG00000054477.16, intron 7 of 10) 7437 ENSMUSG00000054477.16 ENSMUSG00000054477 ENSMUST00000236405 Kcnn2 protein_coding Interval_61000 chr15 78623224 78623835 + 0 NA Intergenic Intergenic 26476 ENSMUSG00000018008.8 ENSMUSG00000018008 ENSMUST00000230583 Cyth4 protein_coding Interval_95991 chr2 119014977 119015653 + 0 NA Intergenic Intergenic 7106 ENSMUSG00000081413.3 ENSMUSG00000081413 ENSMUST00000121613 Uqcrh-ps2 processed_pseudogene Interval_142604 chr6 144131925 144132302 + 0 NA intron (ENSMUSG00000041540.16, intron 5 of 6) protein_coding-intron (ENSMUSG00000041540.16, intron 2 of 14) 77455 ENSMUSG00000041540.16 ENSMUSG00000041540 ENSMUST00000150087 Sox5 protein_coding Interval_158603 chr8 84707015 84708149 + 0 NA exon (ENSMUSG00000001911.16, exon 11 of 11) protein_coding-exon (ENSMUSG00000001911.16, exon 11 of 11) 134 ENSMUSG00000001911.16 ENSMUSG00000001911 ENSMUST00000126806 Nfix protein_coding Interval_143281 chr7 4938242 4938892 + 0 NA intron (ENSMUSG00000035279.8, intron 1 of 1) protein_coding-intron (ENSMUSG00000035279.8, intron 12 of 13) 1477 ENSMUSG00000035279.8 ENSMUSG00000035279 ENSMUST00000207310 Ssc5d protein_coding Interval_52854 chr14 51107154 51107429 + 0 NA Intergenic Intergenic -7135 ENSMUSG00000072575.4 ENSMUSG00000072575 ENSMUST00000100645 Eddm3b protein_coding Interval_88911 chr2 12582501 12582713 + 0 NA Intergenic Intergenic -114810 ENSMUSG00000104045.1 ENSMUSG00000104045 ENSMUST00000192277 Gm37565 lincRNA Interval_84632 chr19 14543471 14545053 + 0 NA exon (ENSMUSG00000024642.17, exon 4 of 4) protein_coding-exon (ENSMUSG00000024642.17, exon 4 of 4) 51277 ENSMUSG00000024642.17 ENSMUSG00000024642 ENSMUST00000235975 Tle4 protein_coding Interval_171198 chr9 115129670 115129946 + 0 NA intron (ENSMUSG00000040875.12, intron 1 of 4) protein_coding-intron (ENSMUSG00000040875.12, intron 2 of 9) 56250 ENSMUSG00000098127.1 ENSMUSG00000098127 ENSMUST00000183244 Gm4665 antisense Interval_169541 chr9 98985927 98986987 + 0 NA promoter-TSS (ENSMUSG00000032463.10) protein_coding-promoter-TSS (ENSMUSG00000032463.10) 56 ENSMUSG00000032463.10 ENSMUSG00000032463 ENSMUST00000185472 Faim protein_coding Interval_94024 chr2 80878262 80878678 + 0 NA Intergenic Intergenic -11636 ENSMUSG00000084297.1 ENSMUSG00000084297 ENSMUST00000118509 Gm13755 processed_pseudogene Interval_121266 chr4 154523624 154523909 + 0 NA intron (ENSMUSG00000039410.16, intron 2 of 2) protein_coding-intron (ENSMUSG00000039410.16, intron 2 of 16) -26516 ENSMUSG00000086565.1 ENSMUSG00000086565 ENSMUST00000143888 Gm13133 antisense Interval_55592 chr14 94305307 94306269 + 0 NA Intergenic Intergenic -48623 ENSMUSG00000115613.1 ENSMUSG00000115613 ENSMUST00000228013 Gm48982 processed_pseudogene Interval_85058 chr19 21892337 21892780 + 0 NA Intergenic Intergenic -44822 ENSMUSG00000045104.9 ENSMUSG00000045104 ENSMUST00000060477 Ldhb-ps processed_pseudogene Interval_71914 chr17 26972546 26973715 + 0 NA promoter-TSS (ENSMUSG00000079605.5) protein_coding-promoter-TSS (ENSMUSG00000079605.5) -87 ENSMUSG00000117819.1 ENSMUSG00000117819 ENSMUST00000133257 Gm50253 protein_coding Interval_113264 chr4 52627356 52628039 + 0 NA Intergenic Intergenic 20491 ENSMUSG00000028314.6 ENSMUSG00000028314 ENSMUST00000107671 Toporsl protein_coding Interval_63642 chr15 102496353 102496983 + 0 NA TTS (ENSMUSG00000023050.9) protein_coding-TTS (ENSMUSG00000023050.9) -7054 ENSMUSG00000071586.4 ENSMUSG00000071586 ENSMUST00000096145 Gm10337 protein_coding Interval_74604 chr17 53658703 53660472 + 0 NA intron (ENSMUSG00000000708.14, intron 1 of 2) protein_coding-intron (ENSMUSG00000000708.14, intron 12 of 17) 276 ENSMUSG00000000708.14 ENSMUSG00000000708 ENSMUST00000171072 Kat2b protein_coding Interval_28772 chr11 78226067 78226737 + 0 NA intron (ENSMUSG00000002052.6, intron 13 of 36) protein_coding-intron (ENSMUSG00000002052.6, intron 13 of 36) -2716 ENSMUSG00000002052.6 ENSMUSG00000002052 ENSMUST00000108314 Supt6 protein_coding Interval_70414 chr17 9926101 9927168 + 0 NA TTS (ENSMUSG00000117227.1) lincRNA-TTS (ENSMUSG00000117227.1) 3133 ENSMUSG00000117227.1 ENSMUSG00000117227 ENSMUST00000232911 Gm34799 lincRNA Interval_92044 chr2 52865837 52866536 + 0 NA intron (ENSMUSG00000036053.17, intron 1 of 26) protein_coding-intron (ENSMUSG00000036053.17, intron 1 of 26) 8326 ENSMUSG00000036053.17 ENSMUSG00000036053 ENSMUST00000050719 Fmnl2 protein_coding Interval_51969 chr14 34346008 34346688 + 0 NA TTS (ENSMUSG00000115431.1) processed_pseudogene-TTS (ENSMUSG00000115431.1) 1067 ENSMUSG00000115431.1 ENSMUSG00000115431 ENSMUST00000226608 Gm3219 processed_pseudogene Interval_40159 chr12 102092164 102092565 + 0 NA Intergenic Intergenic -37055 ENSMUSG00000041771.14 ENSMUSG00000041771 ENSMUST00000235018 Slc24a4 protein_coding Interval_5102 chr1 84933597 84935325 + 0 NA intron (ENSMUSG00000026220.6, intron 1 of 4) protein_coding-intron (ENSMUSG00000026220.6, intron 1 of 4) 396 ENSMUSG00000026220.6 ENSMUSG00000026220 ENSMUST00000186980 Slc16a14 protein_coding Interval_94007 chr2 80650157 80650561 + 0 NA intron (ENSMUSG00000026999.14, intron 6 of 9) protein_coding-intron (ENSMUSG00000026999.14, intron 4 of 8) 11095 ENSMUSG00000026999.14 ENSMUSG00000026999 ENSMUST00000127926 Nup35 protein_coding Interval_26733 chr11 60084345 60084964 + 0 NA Intergenic Intergenic -14893 ENSMUSG00000098502.1 ENSMUSG00000098502 ENSMUST00000183502 Gm27511 misc_RNA Interval_61976 chr15 85600226 85601074 + 0 NA Intergenic Intergenic 20398 ENSMUSG00000097209.2 ENSMUSG00000097209 ENSMUST00000180441 AU022754 antisense Interval_120592 chr4 149564434 149565326 + 0 NA TTS (ENSMUSG00000028988.13) protein_coding-TTS (ENSMUSG00000028988.13) 2910 ENSMUSG00000086949.1 ENSMUSG00000086949 ENSMUST00000145263 Gm13066 antisense Interval_169096 chr9 92288456 92288708 + 0 NA promoter-TSS (ENSMUSG00000032372.14) protein_coding-promoter-TSS (ENSMUSG00000032372.14) 12980 ENSMUSG00000032372.14 ENSMUSG00000032372 ENSMUST00000156772 Plscr2 protein_coding Interval_8276 chr1 136893935 136894135 + 0 NA intron (ENSMUSG00000026398.14, intron 6 of 8) protein_coding-intron (ENSMUSG00000026398.14, intron 6 of 8) 55138 ENSMUSG00000026398.14 ENSMUSG00000026398 ENSMUST00000195428 Nr5a2 protein_coding Interval_70303 chr17 8371256 8372984 + 0 NA promoter-TSS (ENSMUSG00000058159.14) protein_coding-promoter-TSS (ENSMUSG00000058159.14) -9675 ENSMUSG00000116860.1 ENSMUSG00000116860 ENSMUST00000231491 Gm46593 processed_pseudogene Interval_152073 chr7 128783072 128783471 + 0 NA intron (ENSMUSG00000055319.8, intron 18 of 18) protein_coding-intron (ENSMUSG00000055319.8, intron 18 of 18) -8308 ENSMUSG00000077283.1 ENSMUSG00000077283 ENSMUST00000104095 n-R5s158 rRNA Interval_71665 chr17 25243238 25244135 + 0 NA TTS (ENSMUSG00000015126.9) protein_coding-TTS (ENSMUSG00000015126.9) 1952 ENSMUSG00000093202.2 ENSMUSG00000093202 ENSMUST00000175461 Mir3547 miRNA Interval_130881 chr5 133172852 133173792 + 0 NA Intergenic Intergenic -270020 ENSMUSG00000106097.1 ENSMUSG00000106097 ENSMUST00000198611 Gm42625 TEC Interval_67259 chr16 44980539 44980871 + 0 NA intron (ENSMUSG00000036172.17, intron 4 of 4) protein_coding-intron (ENSMUSG00000036172.17, intron 5 of 5) 36999 ENSMUSG00000036172.17 ENSMUSG00000036172 ENSMUST00000163358 Cd200r3 protein_coding Interval_160838 chr8 113530866 113531290 + 0 NA Intergenic Intergenic -2407 ENSMUSG00000088258.1 ENSMUSG00000088258 ENSMUST00000157633 Gm24291 snRNA Interval_96086 chr2 119681766 119682223 + 0 NA intron (ENSMUSG00000027304.9, intron 1 of 17) protein_coding-intron (ENSMUSG00000027304.9, intron 1 of 17) 12835 ENSMUSG00000081416.1 ENSMUSG00000081416 ENSMUST00000121637 Gm14383 processed_pseudogene Interval_124303 chr5 43781470 43783105 + 0 NA promoter-TSS (ENSMUSG00000039753.16) protein_coding-promoter-TSS (ENSMUSG00000039753.16) 44 ENSMUSG00000104823.1 ENSMUSG00000104823 ENSMUST00000199476 Gm43182 TEC Interval_33534 chr11 117081350 117082731 + 0 NA Intergenic Intergenic -3796 ENSMUSG00000093083.1 ENSMUSG00000093083 ENSMUST00000175342 Gm24323 miRNA Interval_174833 chrX 169036135 169037099 + 0 NA promoter-TSS (ENSMUSG00000031355.16) protein_coding-promoter-TSS (ENSMUSG00000031355.16) 6 ENSMUSG00000031355.16 ENSMUSG00000031355 ENSMUST00000112127 Arhgap6 protein_coding Interval_24702 chr11 35993511 35993907 + 0 NA Intergenic Intergenic -2345 ENSMUSG00000081571.1 ENSMUSG00000081571 ENSMUST00000117261 Gm12125 processed_pseudogene Interval_125323 chr5 66200155 66200430 + 0 NA intron (ENSMUSG00000084108.2, intron 1 of 1) processed_pseudogene-intron (ENSMUSG00000084108.2, intron 1 of 1) 1034 ENSMUSG00000084108.2 ENSMUSG00000084108 ENSMUST00000120182 Gm15794 processed_pseudogene Interval_19514 chr10 101451427 101452241 + 0 NA Intergenic Intergenic -92343 ENSMUSG00000087723.1 ENSMUSG00000087723 ENSMUST00000157098 Gm26278 snoRNA Interval_86509 chr19 41263144 41264507 + 0 NA exon (ENSMUSG00000025016.11, exon 1 of 14) protein_coding-exon (ENSMUSG00000025016.11, exon 1 of 14) 155 ENSMUSG00000025016.11 ENSMUSG00000025016 ENSMUST00000237871 Tm9sf3 protein_coding Interval_63677 chr15 102739950 102740196 + 0 NA Intergenic Intergenic -30013 ENSMUSG00000023055.10 ENSMUSG00000023055 ENSMUST00000230374 Calcoco1 protein_coding Interval_128590 chr5 114193560 114194358 + 0 NA intron (ENSMUSG00000042010.16, intron 9 of 52) protein_coding-intron (ENSMUSG00000042010.16, intron 8 of 51) 18053 ENSMUSG00000042010.16 ENSMUSG00000042010 ENSMUST00000142489 Acacb protein_coding Interval_112879 chr4 45758473 45759742 + 0 NA Intergenic Intergenic 5116 ENSMUSG00000085876.1 ENSMUSG00000085876 ENSMUST00000147231 Gm12409 processed_transcript Interval_47809 chr13 93303360 93304889 + 0 NA promoter-TSS (ENSMUSG00000007617.18) protein_coding-promoter-TSS (ENSMUSG00000007617.18) 4489 ENSMUSG00000007617.18 ENSMUSG00000007617 ENSMUST00000079086 Homer1 protein_coding Interval_148099 chr7 79211166 79212448 + 0 NA Intergenic Intergenic 61004 ENSMUSG00000108387.1 ENSMUSG00000108387 ENSMUST00000206434 Gm31510 bidirectional_promoter_lncRNA Interval_96069 chr2 119579155 119580986 + 0 NA intron (ENSMUSG00000014077.13, intron 2 of 4) protein_coding-intron (ENSMUSG00000014077.13, intron 4 of 6) -14233 ENSMUSG00000085438.1 ENSMUSG00000085438 ENSMUST00000153581 Oip5os1 lincRNA Interval_132165 chr5 143043253 143043717 + 0 NA intron (ENSMUSG00000045078.12, intron 13 of 16) protein_coding-intron (ENSMUSG00000045078.12, intron 13 of 16) 6558 ENSMUSG00000106543.1 ENSMUSG00000106543 ENSMUST00000199336 Gm43378 sense_intronic Interval_115091 chr4 89532398 89532648 + 0 NA Intergenic Intergenic 87304 ENSMUSG00000098669.1 ENSMUSG00000098669 ENSMUST00000183666 Gm27580 misc_RNA Interval_133763 chr6 11901091 11901378 + 0 NA intron (ENSMUSG00000029632.7, intron 3 of 3) protein_coding-intron (ENSMUSG00000029632.7, intron 3 of 3) 6249 ENSMUSG00000029632.7 ENSMUSG00000029632 ENSMUST00000204714 Ndufa4 protein_coding Interval_33362 chr11 116126131 116126526 + 0 NA exon (ENSMUSG00000054517.9, exon 6 of 6) protein_coding-exon (ENSMUSG00000054517.9, exon 6 of 6) 4800 ENSMUSG00000054517.9 ENSMUSG00000054517 ENSMUST00000154061 Trim65 protein_coding Interval_116617 chr4 116088495 116089498 + 0 NA promoter-TSS (ENSMUSG00000028703.14) protein_coding-promoter-TSS (ENSMUSG00000028703.14) 13533 ENSMUSG00000028703.14 ENSMUSG00000028703 ENSMUST00000134983 Lrrc41 protein_coding Interval_104884 chr3 78032042 78032927 + 0 NA Intergenic Intergenic 26025 ENSMUSG00000103312.1 ENSMUSG00000103312 ENSMUST00000195100 Gm6677 processed_pseudogene Interval_32639 chr11 109353541 109354426 + 0 NA TTS (ENSMUSG00000056687.9) antisense-TTS (ENSMUSG00000056687.9) 7144 ENSMUSG00000099630.1 ENSMUSG00000099630 ENSMUST00000190043 1700096J18Rik lincRNA Interval_28904 chr11 79176679 79176887 + 0 NA Intergenic Intergenic -36013 ENSMUSG00000081000.1 ENSMUSG00000081000 ENSMUST00000121698 Gm11200 processed_pseudogene Interval_143273 chr7 4899033 4899995 + 0 NA intron (ENSMUSG00000110221.1, intron 1 of 1) protein_coding-intron (ENSMUSG00000110221.1, intron 1 of 1) 7002 ENSMUSG00000110221.1 ENSMUSG00000110221 ENSMUST00000210663 Gm36210 protein_coding Interval_87347 chr19 47864940 47866036 + 0 NA promoter-TSS (ENSMUSG00000025069.15) protein_coding-promoter-TSS (ENSMUSG00000025069.15) -338 ENSMUSG00000025069.15 ENSMUSG00000025069 ENSMUST00000135016 Gsto2 protein_coding Interval_11155 chr1 179722886 179724671 + 0 NA intron (ENSMUSG00000087236.3, intron 7 of 22) protein_coding-intron (ENSMUSG00000087236.3, intron 7 of 22) -23498 ENSMUSG00000087236.3 ENSMUSG00000087236 ENSMUST00000223392 Kif28 protein_coding Interval_79948 chr18 36166128 36168317 + 0 NA intron (ENSMUSG00000060275.14, intron 1 of 9) protein_coding-intron (ENSMUSG00000060275.14, intron 2 of 7) 61571 ENSMUSG00000117852.1 ENSMUSG00000117852 ENSMUST00000235667 4930471G03Rik antisense Interval_54523 chr14 70465481 70467403 + 0 NA intron (ENSMUSG00000003469.9, intron 4 of 4) protein_coding-intron (ENSMUSG00000003469.9, intron 4 of 4) 7919 ENSMUSG00000003469.9 ENSMUSG00000003469 ENSMUST00000159180 Phyhip protein_coding Interval_5203 chr1 86440065 86440966 + 0 NA Intergenic Intergenic 14186 ENSMUSG00000036574.5 ENSMUSG00000036574 ENSMUST00000046004 Tex44 protein_coding Interval_72446 chr17 29854369 29855936 + 0 NA intron (ENSMUSG00000043557.16, intron 2 of 16) protein_coding-intron (ENSMUSG00000043557.16, intron 2 of 15) -15171 ENSMUSG00000043557.16 ENSMUSG00000043557 ENSMUST00000167102 Mdga1 protein_coding Interval_153393 chr7 144385612 144385870 + 0 NA intron (ENSMUSG00000085745.1, intron 2 of 2) protein_coding-intron (ENSMUSG00000037541.22, intron 2 of 9) 21192 ENSMUSG00000085745.1 ENSMUSG00000085745 ENSMUST00000125355 Gm14372 antisense Interval_124049 chr5 37826810 37827565 + 0 NA Intergenic Intergenic -2605 ENSMUSG00000048450.10 ENSMUSG00000048450 ENSMUST00000183013 Msx1 protein_coding Interval_23821 chr11 26571593 26571867 + 0 NA intron (ENSMUSG00000064090.14, intron 2 of 4) protein_coding-intron (ENSMUSG00000064090.14, intron 2 of 12) -21496 ENSMUSG00000068314.5 ENSMUSG00000068314 ENSMUST00000089614 Gm6899 TEC Interval_107205 chr3 104599451 104599742 + 0 NA Intergenic Intergenic 1643 ENSMUSG00000084653.1 ENSMUSG00000084653 ENSMUST00000122704 Gm26091 snRNA Interval_7886 chr1 134381487 134382525 + 0 NA Intergenic Intergenic -3934 ENSMUSG00000050526.5 ENSMUSG00000050526 ENSMUST00000162187 Mgat4f protein_coding Interval_97560 chr2 139842823 139843068 + 0 NA intron (ENSMUSG00000039033.11, intron 13 of 13) protein_coding-intron (ENSMUSG00000039033.11, intron 13 of 13) -20352 ENSMUSG00000084207.1 ENSMUSG00000084207 ENSMUST00000120773 Gm14070 processed_pseudogene Interval_170006 chr9 103564447 103564664 + 0 NA intron (ENSMUSG00000099616.1, intron 2 of 2) protein_coding-intron (ENSMUSG00000042757.16, intron 2 of 4) 7465 ENSMUSG00000099616.1 ENSMUSG00000099616 ENSMUST00000190332 4932413F04Rik antisense Interval_17082 chr10 71258501 71258695 + 0 NA intron (ENSMUSG00000019927.6, intron 3 of 3) protein_coding-intron (ENSMUSG00000019927.6, intron 4 of 6) -1710 ENSMUSG00000019927.6 ENSMUSG00000019927 ENSMUST00000144231 Ube2d1 protein_coding Interval_66484 chr16 34175371 34176636 + 0 NA intron (ENSMUSG00000061751.16, intron 27 of 30) protein_coding-intron (ENSMUSG00000061751.16, intron 30 of 59) -79975 ENSMUSG00000061751.16 ENSMUSG00000061751 ENSMUST00000132569 Kalrn protein_coding Interval_8335 chr1 137425914 137426306 + 0 NA Intergenic Intergenic -58863 ENSMUSG00000088164.1 ENSMUSG00000088164 ENSMUST00000157539 Gm23534 snoRNA Interval_18211 chr10 83724501 83724885 + 0 NA intron (ENSMUSG00000087651.3, intron 1 of 1) protein_coding-intron (ENSMUSG00000087651.3, intron 1 of 5) -13216 ENSMUSG00000087651.3 ENSMUSG00000087651 ENSMUST00000218623 1500009L16Rik protein_coding Interval_174361 chrX 150096729 150097367 + 0 NA Intergenic Intergenic 13519 ENSMUSG00000094767.1 ENSMUSG00000094767 ENSMUST00000118183 Gm8402 processed_pseudogene Interval_76155 chr17 75630178 75630515 + 0 NA Intergenic Intergenic -30894 ENSMUSG00000117540.1 ENSMUSG00000117540 ENSMUST00000234396 Gm9360 processed_pseudogene Interval_30941 chr11 97321807 97323727 + 0 NA promoter-TSS (ENSMUSG00000081958.1) processed_pseudogene-promoter-TSS (ENSMUSG00000081958.1) -278 ENSMUSG00000081958.1 ENSMUSG00000081958 ENSMUST00000122313 Gm11594 processed_pseudogene Interval_54467 chr14 70008833 70010004 + 0 NA intron (ENSMUSG00000022085.4, intron 4 of 6) protein_coding-intron (ENSMUSG00000022085.4, intron 4 of 6) 47949 ENSMUSG00000114446.1 ENSMUSG00000114446 ENSMUST00000224990 Gm33524 antisense Interval_23096 chr11 19932582 19933361 + 0 NA intron (ENSMUSG00000045671.17, intron 1 of 6) protein_coding-intron (ENSMUSG00000045671.17, intron 1 of 5) -21599 ENSMUSG00000045671.17 ENSMUSG00000045671 ENSMUST00000123036 Spred2 protein_coding Interval_161024 chr8 116978419 116979348 + 0 NA promoter-TSS (ENSMUSG00000031847.8) protein_coding-promoter-TSS (ENSMUSG00000031847.8) 76 ENSMUSG00000031847.8 ENSMUSG00000031847 ENSMUST00000213068 1700030J22Rik protein_coding Interval_104134 chr3 58922724 58923658 + 0 NA Intergenic Intergenic -52439 ENSMUSG00000087815.1 ENSMUSG00000087815 ENSMUST00000157190 Gm22491 snRNA Interval_155143 chr8 27014139 27015139 + 0 NA Intergenic Intergenic 5454 ENSMUSG00000110081.1 ENSMUSG00000110081 ENSMUST00000210667 Gm19164 processed_pseudogene Interval_116870 chr4 117867729 117868525 + 0 NA TTS (ENSMUSG00000078588.10) protein_coding-TTS (ENSMUSG00000078588.10) 431 ENSMUSG00000091237.1 ENSMUSG00000091237 ENSMUST00000164716 Gm17114 3prime_overlapping_ncRNA Interval_122619 chr5 24255615 24256856 + 0 NA promoter-TSS (ENSMUSG00000081071.1) processed_pseudogene-promoter-TSS (ENSMUSG00000081071.1) -587 ENSMUSG00000081071.1 ENSMUSG00000081071 ENSMUST00000117132 Gm9836 processed_pseudogene Interval_144550 chr7 25831207 25832363 + 0 NA Intergenic Intergenic -2908 ENSMUSG00000090467.3 ENSMUSG00000090467 ENSMUST00000165488 Gm4613 processed_pseudogene Interval_78511 chr18 13897164 13897530 + 0 NA intron (ENSMUSG00000024420.9, intron 2 of 2) protein_coding-intron (ENSMUSG00000024420.9, intron 3 of 7) 6123 ENSMUSG00000117600.1 ENSMUSG00000117600 ENSMUST00000234954 Gm50094 TEC Interval_125597 chr5 72433552 72434314 + 0 NA intron (ENSMUSG00000005220.10, intron 3 of 20) protein_coding-intron (ENSMUSG00000005220.10, intron 4 of 21) -15114 ENSMUSG00000095112.1 ENSMUSG00000095112 ENSMUST00000179713 Gm23712 snRNA Interval_125901 chr5 75537064 75538804 + 0 NA Intergenic Intergenic 23216 ENSMUSG00000089078.1 ENSMUSG00000089078 ENSMUST00000158453 Gm24502 snRNA Interval_34364 chr12 3625309 3626015 + 0 NA intron (ENSMUSG00000071454.13, intron 5 of 17) protein_coding-intron (ENSMUSG00000071454.13, intron 5 of 17) 53192 ENSMUSG00000071454.13 ENSMUSG00000071454 ENSMUST00000174293 Dtnb protein_coding Interval_73939 chr17 45584354 45586938 + 0 NA promoter-TSS (ENSMUSG00000067389.3) antisense-promoter-TSS (ENSMUSG00000067389.3) -474 ENSMUSG00000067389.3 ENSMUSG00000067389 ENSMUST00000087588 Gm17080 antisense Interval_81412 chr18 60602184 60604135 + 0 NA TTS (ENSMUSG00000043079.17) protein_coding-TTS (ENSMUSG00000043079.17) -11371 ENSMUSG00000049173.8 ENSMUSG00000049173 ENSMUST00000056533 Myoz3 protein_coding Interval_9870 chr1 163569128 163569398 + 0 NA Intergenic Intergenic -38114 ENSMUSG00000101869.1 ENSMUSG00000101869 ENSMUST00000185992 Gm29500 lincRNA Interval_171900 chr9 122234344 122235734 + 0 NA intron (ENSMUSG00000037949.8, intron 11 of 12) protein_coding-intron (ENSMUSG00000037949.8, intron 11 of 12) 38989 ENSMUSG00000098922.1 ENSMUSG00000098922 ENSMUST00000184520 Mir8106 miRNA Interval_76813 chr17 84240925 84241868 + 0 NA intron (ENSMUSG00000024251.10, intron 6 of 12) protein_coding-intron (ENSMUSG00000024251.10, intron 31 of 37) 46351 ENSMUSG00000065732.1 ENSMUSG00000065732 ENSMUST00000083798 Gm24492 snRNA Interval_88714 chr2 9945875 9946232 + 0 NA intron (ENSMUSG00000025782.12, intron 1 of 4) protein_coding-intron (ENSMUSG00000025782.12, intron 3 of 6) -4302 ENSMUSG00000025782.12 ENSMUSG00000025782 ENSMUST00000114907 Taf3 protein_coding Interval_65118 chr16 19867234 19867771 + 0 NA Intergenic Intergenic -14735 ENSMUSG00000116980.1 ENSMUSG00000116980 ENSMUST00000232498 Gm49597 processed_pseudogene Interval_33515 chr11 116987114 116987343 + 0 NA TTS (ENSMUSG00000043857.16) protein_coding-TTS (ENSMUSG00000043857.16) 39893 ENSMUSG00000043857.16 ENSMUSG00000043857 ENSMUST00000126757 Mgat5b protein_coding Interval_110235 chr3 154667725 154667925 + 0 NA intron (ENSMUSG00000078161.8, intron 1 of 13) protein_coding-intron (ENSMUSG00000078161.8, intron 1 of 13) 11124 ENSMUSG00000103204.1 ENSMUSG00000103204 ENSMUST00000195806 Gm38139 sense_overlapping Interval_61186 chr15 79841408 79842042 + 0 NA Intergenic Intergenic -1438 ENSMUSG00000115971.1 ENSMUSG00000115971 ENSMUST00000230701 Gm10856 lincRNA Interval_157721 chr8 72521338 72522223 + 0 NA intron (ENSMUSG00000045248.6, intron 1 of 2) protein_coding-intron (ENSMUSG00000045248.6, intron 1 of 2) 6422 ENSMUSG00000110446.1 ENSMUSG00000110446 ENSMUST00000212240 Gm18646 processed_pseudogene Interval_2316 chr1 38011773 38012134 + 0 NA intron (ENSMUSG00000026083.12, intron 1 of 21) protein_coding-intron (ENSMUSG00000026083.12, intron 1 of 23) -14060 ENSMUSG00000058407.12 ENSMUSG00000058407 ENSMUST00000194692 Txndc9 protein_coding Interval_63141 chr15 99326761 99327207 + 0 NA TTS (ENSMUSG00000023008.18) protein_coding-TTS (ENSMUSG00000023008.18) 8743 ENSMUSG00000023008.18 ENSMUSG00000023008 ENSMUST00000140368 Fmnl3 protein_coding Interval_89867 chr2 26100584 26100990 + 0 NA intron (ENSMUSG00000026932.14, intron 1 of 2) protein_coding-intron (ENSMUSG00000026932.14, intron 1 of 5) -8968 ENSMUSG00000026932.14 ENSMUSG00000026932 ENSMUST00000149408 Nacc2 protein_coding Interval_108448 chr3 127309101 127309746 + 0 NA intron (ENSMUSG00000032826.19, intron 2 of 15) protein_coding-intron (ENSMUSG00000032826.19, intron 2 of 14) -9750 ENSMUSG00000106446.1 ENSMUSG00000106446 ENSMUST00000196407 Gm42970 TEC Interval_74043 chr17 46241521 46242487 + 0 NA intron (ENSMUSG00000067150.6, intron 12 of 12) protein_coding-intron (ENSMUSG00000067150.6, intron 31 of 31) 5963 ENSMUSG00000067148.15 ENSMUSG00000067148 ENSMUST00000124126 Polr1c protein_coding Interval_114333 chr4 73517087 73519058 + 0 NA Intergenic Intergenic -19595 ENSMUSG00000081871.1 ENSMUSG00000081871 ENSMUST00000117277 Gm11488 processed_pseudogene Interval_32984 chr11 113519459 113519682 + 0 NA intron (ENSMUSG00000041654.15, intron 4 of 4) protein_coding-intron (ENSMUSG00000041654.15, intron 5 of 10) 46209 ENSMUSG00000041654.15 ENSMUSG00000041654 ENSMUST00000123153 Slc39a11 protein_coding Interval_117582 chr4 124831136 124833551 + 0 NA intron (ENSMUSG00000028890.13, intron 8 of 11) protein_coding-intron (ENSMUSG00000028890.13, intron 7 of 10) 11522 ENSMUSG00000084526.1 ENSMUSG00000084526 ENSMUST00000122577 n-R5s192 rRNA Interval_127843 chr5 108148012 108148213 + 0 NA intron (ENSMUSG00000056531.11, intron 5 of 8) protein_coding-intron (ENSMUSG00000056531.11, intron 5 of 28) -1205 ENSMUSG00000105554.1 ENSMUSG00000105554 ENSMUST00000200167 Gm7118 processed_pseudogene Interval_156164 chr8 45358064 45359390 + 0 NA promoter-TSS (ENSMUSG00000070044.15) protein_coding-promoter-TSS (ENSMUSG00000070044.15) 35 ENSMUSG00000070044.15 ENSMUSG00000070044 ENSMUST00000155230 Fam149a protein_coding Interval_166407 chr9 59198497 59198770 + 0 NA intron (ENSMUSG00000110789.1, intron 4 of 4) lincRNA-intron (ENSMUSG00000110789.1, intron 4 of 4) 36438 ENSMUSG00000110789.1 ENSMUSG00000110789 ENSMUST00000215275 Gm33053 lincRNA Interval_77946 chr18 5989513 5990424 + 0 NA Intergenic Intergenic 25053 ENSMUSG00000117548.1 ENSMUSG00000117548 ENSMUST00000234469 Gm41662 TEC Interval_171654 chr9 119973733 119974853 + 0 NA TTS (ENSMUSG00000032515.8) protein_coding-TTS (ENSMUSG00000032515.8) -8853 ENSMUSG00000111639.1 ENSMUSG00000111639 ENSMUST00000214403 1700019L13Rik antisense Interval_63460 chr15 101213128 101213329 + 0 NA exon (ENSMUSG00000000532.11, exon 9 of 9) protein_coding-exon (ENSMUSG00000000532.11, exon 9 of 9) -8019 ENSMUSG00000115944.1 ENSMUSG00000115944 ENSMUST00000229162 AU021063 lincRNA Interval_78801 chr18 20710340 20710893 + 0 NA intron (ENSMUSG00000056124.5, intron 3 of 8) protein_coding-intron (ENSMUSG00000056124.5, intron 3 of 8) -27653 ENSMUSG00000091449.3 ENSMUSG00000091449 ENSMUST00000165229 Gm10269 processed_pseudogene Interval_83947 chr19 5750927 5751999 + 0 NA TTS (ENSMUSG00000024940.11) protein_coding-TTS (ENSMUSG00000024940.11) -5507 ENSMUSG00000024940.11 ENSMUSG00000024940 ENSMUST00000237180 Ltbp3 protein_coding Interval_815 chr1 11657500 11658397 + 0 NA intron (ENSMUSG00000057715.13, intron 7 of 12) protein_coding-intron (ENSMUSG00000057715.13, intron 7 of 13) -46259 ENSMUSG00000103561.1 ENSMUSG00000103561 ENSMUST00000195360 Gm38069 TEC Interval_79457 chr18 32054562 32055861 + 0 NA Intergenic Intergenic 24122 ENSMUSG00000085300.1 ENSMUSG00000085300 ENSMUST00000146065 Gm16345 processed_pseudogene Interval_72471 chr17 30028847 30029087 + 0 NA intron (ENSMUSG00000044477.12, intron 1 of 4) protein_coding-intron (ENSMUSG00000044477.12, intron 1 of 4) -24276 ENSMUSG00000117371.1 ENSMUSG00000117371 ENSMUST00000233996 Gm50019 bidirectional_promoter_lncRNA Interval_158663 chr8 85012956 85014288 + 0 NA promoter-TSS (ENSMUSG00000052819.6) protein_coding-promoter-TSS (ENSMUSG00000052819.6) 909 ENSMUSG00000052819.6 ENSMUSG00000052819 ENSMUST00000209421 Best2 protein_coding Interval_119675 chr4 139154650 139155541 + 0 NA Intergenic Intergenic 4898 ENSMUSG00000083238.1 ENSMUSG00000083238 ENSMUST00000119538 Hspe1-ps4 processed_pseudogene Interval_122829 chr5 25847921 25848794 + 0 NA intron (ENSMUSG00000056367.14, intron 8 of 10) protein_coding-intron (ENSMUSG00000056367.14, intron 9 of 11) 77933 ENSMUSG00000105052.4 ENSMUSG00000105052 ENSMUST00000167847 Gm21655 processed_transcript Interval_102300 chr3 21399773 21400017 + 0 NA Intergenic Intergenic -130805 ENSMUSG00000101897.1 ENSMUSG00000101897 ENSMUST00000190301 Gm29137 lincRNA Interval_108840 chr3 132412434 132413287 + 0 NA Intergenic Intergenic 32688 ENSMUSG00000106280.1 ENSMUSG00000106280 ENSMUST00000198028 Gm42880 lincRNA Interval_157456 chr8 70491343 70491546 + 0 NA Intergenic Intergenic -1917 ENSMUSG00000007888.15 ENSMUSG00000007888 ENSMUST00000127983 Crlf1 protein_coding Interval_151232 chr7 119911946 119912179 + 0 NA intron (ENSMUSG00000030922.12, intron 3 of 5) protein_coding-intron (ENSMUSG00000030922.12, intron 3 of 4) -15764 ENSMUSG00000048787.13 ENSMUSG00000048787 ENSMUST00000207488 Dcun1d3 protein_coding Interval_14199 chr10 28723797 28724011 + 0 NA intron (ENSMUSG00000049109.15, intron 2 of 2) protein_coding-intron (ENSMUSG00000049109.15, intron 2 of 5) -13521 ENSMUSG00000049109.15 ENSMUSG00000049109 ENSMUST00000219119 Themis protein_coding Interval_168190 chr9 77848965 77849720 + 0 NA Intergenic Intergenic -2366 ENSMUSG00000111580.1 ENSMUSG00000111580 ENSMUST00000214326 Gm19572 processed_pseudogene Interval_148262 chr7 80158308 80158847 + 0 NA Intergenic Intergenic 3408 ENSMUSG00000108757.1 ENSMUSG00000108757 ENSMUST00000205955 Gm45202 lincRNA Interval_143896 chr7 16999570 17000071 + 0 NA Intergenic Intergenic 7112 ENSMUSG00000041117.8 ENSMUSG00000041117 ENSMUST00000094805 Ccdc8 protein_coding Interval_94286 chr2 87497702 87497996 + 0 NA promoter-TSS (ENSMUSG00000025839.3) protein_coding-promoter-TSS (ENSMUSG00000025839.3) -756 ENSMUSG00000025839.3 ENSMUSG00000025839 ENSMUST00000141790 Pramel7 protein_coding Interval_110451 chr3 158332422 158332716 + 0 NA intron (ENSMUSG00000028176.13, intron 3 of 24) protein_coding-intron (ENSMUSG00000028176.13, intron 4 of 27) 38155 ENSMUSG00000106448.1 ENSMUSG00000106448 ENSMUST00000196431 Gm43486 TEC Interval_166179 chr9 57280857 57282064 + 0 NA Intergenic Intergenic -19951 ENSMUSG00000032300.7 ENSMUSG00000032300 ENSMUST00000217657 1700017B05Rik protein_coding Interval_148235 chr7 80029900 80031332 + 0 NA intron (ENSMUSG00000048897.15, intron 1 of 1) protein_coding-intron (ENSMUSG00000048897.15, intron 1 of 4) 2802 ENSMUSG00000048897.15 ENSMUSG00000048897 ENSMUST00000206104 Zfp710 protein_coding Interval_112223 chr4 36691065 36691415 + 0 NA intron (ENSMUSG00000045083.14, intron 2 of 6) protein_coding-intron (ENSMUSG00000045083.14, intron 2 of 7) -22654 ENSMUSG00000078057.1 ENSMUSG00000078057 ENSMUST00000104863 Mir873a miRNA Interval_171835 chr9 121613882 121616625 + 0 NA TTS (ENSMUSG00000084995.8) antisense-TTS (ENSMUSG00000084995.8) 12409 ENSMUSG00000084995.8 ENSMUSG00000084995 ENSMUST00000213548 Lyzl4os antisense Interval_119517 chr4 138061760 138062351 + 0 NA intron (ENSMUSG00000028760.16, intron 4 of 33) protein_coding-intron (ENSMUSG00000028760.16, intron 3 of 9) 68542 ENSMUSG00000028760.16 ENSMUSG00000028760 ENSMUST00000148074 Eif4g3 protein_coding Interval_96717 chr2 127396406 127397484 + 0 NA Intergenic Intergenic -28254 ENSMUSG00000046338.4 ENSMUSG00000046338 ENSMUST00000062211 Gpat2 protein_coding Interval_103844 chr3 53585349 53585591 + 0 NA intron (ENSMUSG00000037016.11, intron 4 of 23) protein_coding-intron (ENSMUSG00000037016.11, intron 4 of 23) -62450 ENSMUSG00000037016.11 ENSMUSG00000037016 ENSMUST00000199323 Frem2 protein_coding Interval_172340 chrX 13206240 13208670 + 0 NA Intergenic Intergenic 4884 ENSMUSG00000084349.3 ENSMUSG00000084349 ENSMUST00000120557 Rpl3-ps1 processed_pseudogene Interval_101134 chr2 178277187 178277652 + 0 NA intron (ENSMUSG00000027525.18, intron 4 of 12) protein_coding-intron (ENSMUSG00000027525.18, intron 4 of 12) -50137 ENSMUSG00000027525.18 ENSMUSG00000027525 ENSMUST00000133267 Phactr3 protein_coding Interval_6077 chr1 96116169 96116375 + 0 NA Intergenic Intergenic -94514 ENSMUSG00000100062.1 ENSMUSG00000100062 ENSMUST00000190901 1700063A18Rik lincRNA Interval_71499 chr17 24182621 24182828 + 0 NA intron (ENSMUSG00000036473.16, intron 4 of 6) protein_coding-intron (ENSMUSG00000036473.16, intron 5 of 7) -13658 ENSMUSG00000024121.13 ENSMUSG00000024121 ENSMUST00000150647 Atp6v0c protein_coding Interval_87389 chr19 48300643 48300959 + 0 NA intron (ENSMUSG00000063434.6, intron 1 of 26) protein_coding-intron (ENSMUSG00000063434.6, intron 1 of 26) -60156 ENSMUSG00000089004.1 ENSMUSG00000089004 ENSMUST00000158379 Gm23857 rRNA Interval_152065 chr7 128726182 128727986 + 0 NA intron (ENSMUSG00000048170.14, intron 1 of 16) protein_coding-intron (ENSMUSG00000048170.14, intron 1 of 15) -1310 ENSMUSG00000108648.1 ENSMUSG00000108648 ENSMUST00000206159 Gm44674 antisense Interval_60965 chr15 78325845 78326133 + 0 NA promoter-TSS (ENSMUSG00000071713.6) protein_coding-promoter-TSS (ENSMUSG00000071713.6) -67 ENSMUSG00000071713.6 ENSMUSG00000071713 ENSMUST00000231888 Csf2rb protein_coding Interval_156606 chr8 54507559 54509993 + 0 NA Intergenic Intergenic 5374 ENSMUSG00000110403.1 ENSMUSG00000110403 ENSMUST00000209929 Gm45553 TEC Interval_105670 chr3 88483250 88485153 + 0 NA exon (ENSMUSG00000028063.15, exon 1 of 3) protein_coding-exon (ENSMUSG00000028063.15, exon 1 of 3) -1337 ENSMUSG00000028063.15 ENSMUSG00000028063 ENSMUST00000149068 Lmna protein_coding Interval_164901 chr9 42962701 42963509 + 0 NA TTS (ENSMUSG00000059495.14) protein_coding-TTS (ENSMUSG00000059495.14) -1767 ENSMUSG00000111133.1 ENSMUSG00000111133 ENSMUST00000216016 Gm5831 processed_pseudogene Interval_11597 chr1 183113417 183113665 + 0 NA intron (ENSMUSG00000030768.12, intron 3 of 8) protein_coding-intron (ENSMUSG00000030768.12, intron 4 of 9) 38935 ENSMUSG00000094807.2 ENSMUSG00000094807 ENSMUST00000178492 Gm24975 miRNA Interval_149064 chr7 92798833 92800185 + 0 NA intron (ENSMUSG00000030643.14, intron 1 of 3) protein_coding-intron (ENSMUSG00000030643.14, intron 1 of 4) 21004 ENSMUSG00000109257.1 ENSMUSG00000109257 ENSMUST00000207434 Gm45200 TEC Interval_98015 chr2 146722734 146723220 + 0 NA Intergenic Intergenic 32728 ENSMUSG00000080870.1 ENSMUSG00000080870 ENSMUST00000119851 Gm14111 processed_pseudogene Interval_6815 chr1 119836825 119837913 + 0 NA promoter-TSS (ENSMUSG00000026384.13) protein_coding-promoter-TSS (ENSMUSG00000026384.13) 19606 ENSMUSG00000090277.1 ENSMUSG00000090277 ENSMUST00000163928 Gm8338 processed_pseudogene Interval_65951 chr16 30493920 30494530 + 0 NA Intergenic Intergenic 41637 ENSMUSG00000116960.1 ENSMUSG00000116960 ENSMUST00000231864 Gm49679 processed_pseudogene Interval_173269 chrX 75770040 75771178 + 0 NA Intergenic Intergenic 46937 ENSMUSG00000081996.1 ENSMUSG00000081996 ENSMUST00000117092 Gm7153 processed_pseudogene Interval_122685 chr5 24649361 24650024 + 0 NA TTS (ENSMUSG00000038165.8) transcribed_processed_pseudogene-TTS (ENSMUSG00000038165.8) 4239 ENSMUSG00000038165.8 ENSMUSG00000038165 ENSMUST00000182745 1700022A21Rik transcribed_processed_pseudogene Interval_65336 chr16 21652587 21654147 + 0 NA TTS (ENSMUSG00000043391.10) protein_coding-TTS (ENSMUSG00000043391.10) 41213 ENSMUSG00000043391.10 ENSMUSG00000043391 ENSMUST00000232634 2510009E07Rik protein_coding Interval_45977 chr13 59734017 59735664 + 0 NA exon (ENSMUSG00000097502.2, exon 2 of 2) lincRNA-exon (ENSMUSG00000097502.2, exon 2 of 2) 1210 ENSMUSG00000097502.2 ENSMUSG00000097502 ENSMUST00000181700 4930528D03Rik lincRNA Interval_24888 chr11 40754628 40756499 + 0 NA promoter-TSS (ENSMUSG00000020326.7) protein_coding-promoter-TSS (ENSMUSG00000020326.7) -1625 ENSMUSG00000020326.7 ENSMUSG00000020326 ENSMUST00000151359 Ccng1 protein_coding Interval_3496 chr1 58972996 58974240 + 0 NA promoter-TSS (ENSMUSG00000026027.13) protein_coding-promoter-TSS (ENSMUSG00000026027.13) 96 ENSMUSG00000026027.13 ENSMUSG00000026027 ENSMUST00000152318 Stradb protein_coding Interval_41764 chr12 118846650 118850243 + 0 NA exon (ENSMUSG00000048562.7, exon 3 of 3) protein_coding-exon (ENSMUSG00000048562.7, exon 3 of 3) 860 ENSMUSG00000048562.7 ENSMUSG00000048562 ENSMUST00000223305 Sp8 protein_coding Interval_76758 chr17 83866522 83866916 + 0 NA Intergenic Intergenic -12301 ENSMUSG00000097254.2 ENSMUSG00000097254 ENSMUST00000234697 C430042M11Rik lincRNA Interval_94875 chr2 99103188 99103728 + 0 NA Intergenic Intergenic 254271 ENSMUSG00000101186.1 ENSMUSG00000101186 ENSMUST00000185786 Gm29235 lincRNA Interval_82681 chr18 75881662 75882373 + 0 NA intron (ENSMUSG00000044646.15, intron 1 of 5) protein_coding-intron (ENSMUSG00000044646.15, intron 1 of 4) 61802 ENSMUSG00000044646.15 ENSMUSG00000044646 ENSMUST00000167921 Zbtb7c protein_coding Interval_163289 chr9 20628113 20628580 + 0 NA intron (ENSMUSG00000066892.14, intron 1 of 1) protein_coding-intron (ENSMUSG00000066892.14, intron 1 of 1) 13967 ENSMUSG00000066892.14 ENSMUSG00000066892 ENSMUST00000153154 Fbxl12 protein_coding Interval_67032 chr16 41640813 41641586 + 0 NA intron (ENSMUSG00000061080.11, intron 3 of 8) protein_coding-intron (ENSMUSG00000061080.11, intron 1 of 5) -210107 ENSMUSG00000101463.1 ENSMUSG00000101463 ENSMUST00000186327 Gm28750 antisense Interval_66415 chr16 33736531 33737248 + 0 NA intron (ENSMUSG00000075254.12, intron 9 of 16) protein_coding-intron (ENSMUSG00000075254.12, intron 9 of 16) 52519 ENSMUSG00000075254.12 ENSMUSG00000075254 ENSMUST00000146518 Heg1 protein_coding Interval_10796 chr1 175014664 175015554 + 0 NA Intergenic Intergenic 71071 ENSMUSG00000026527.13 ENSMUSG00000026527 ENSMUST00000193798 Rgs7 protein_coding Interval_77318 chr17 87992120 87993168 + 0 NA TTS (ENSMUSG00000005371.15) protein_coding-TTS (ENSMUSG00000005371.15) 17549 ENSMUSG00000005370.4 ENSMUSG00000005370 ENSMUST00000234756 Msh6 protein_coding Interval_148754 chr7 85599750 85600254 + 0 NA intron (ENSMUSG00000091205.3, intron 3 of 5) protein_coding-intron (ENSMUSG00000091205.3, intron 1 of 4) -9446 ENSMUSG00000092533.1 ENSMUSG00000092533 ENSMUST00000172586 Vmn2r-ps72 unprocessed_pseudogene Interval_103604 chr3 51127530 51129487 + 0 NA Intergenic Intergenic 24848 ENSMUSG00000103464.1 ENSMUSG00000103464 ENSMUST00000194318 Gm38246 lincRNA Interval_120971 chr4 151994972 151996916 + 0 NA exon (ENSMUSG00000047777.9, exon 1 of 4) protein_coding-exon (ENSMUSG00000047777.9, exon 1 of 4) 314 ENSMUSG00000047777.9 ENSMUSG00000047777 ENSMUST00000055688 Phf13 protein_coding Interval_15923 chr10 59322907 59324185 + 0 NA intron (ENSMUSG00000019916.14, intron 1 of 14) protein_coding-intron (ENSMUSG00000019916.14, intron 1 of 14) 178 ENSMUSG00000019916.14 ENSMUSG00000019916 ENSMUST00000105466 P4ha1 protein_coding Interval_66960 chr16 38812659 38813023 + 0 NA intron (ENSMUSG00000022798.8, intron 3 of 3) protein_coding-intron (ENSMUSG00000022798.8, intron 3 of 3) -1149 ENSMUSG00000081444.1 ENSMUSG00000081444 ENSMUST00000120118 Gm15803 processed_pseudogene Interval_84818 chr19 17046166 17047633 + 0 NA intron (ENSMUSG00000039126.10, intron 6 of 19) protein_coding-intron (ENSMUSG00000039126.10, intron 6 of 19) 10288 ENSMUSG00000098298.1 ENSMUSG00000098298 ENSMUST00000184854 Gm27970 misc_RNA Interval_144619 chr7 27165898 27167462 + 0 NA promoter-TSS (ENSMUSG00000058709.11) protein_coding-promoter-TSS (ENSMUSG00000058709.11) -5809 ENSMUSG00000058709.11 ENSMUSG00000058709 ENSMUST00000134906 Egln2 protein_coding Interval_69749 chr16 96025372 96025699 + 0 NA intron (ENSMUSG00000022914.17, intron 1 of 8) protein_coding-intron (ENSMUSG00000022914.17, intron 29 of 41) -10555 ENSMUSG00000085884.1 ENSMUSG00000085884 ENSMUST00000146222 Gm15342 processed_transcript Interval_101405 chr2 181088387 181088809 + 0 NA intron (ENSMUSG00000016346.17, intron 10 of 14) protein_coding-intron (ENSMUSG00000016346.17, intron 10 of 16) 21158 ENSMUSG00000016346.17 ENSMUSG00000016346 ENSMUST00000140789 Kcnq2 protein_coding Interval_99016 chr2 156690218 156691550 + 0 NA intron (ENSMUSG00000061689.15, intron 2 of 12) protein_coding-intron (ENSMUSG00000061689.15, intron 2 of 12) 30025 ENSMUSG00000086638.7 ENSMUSG00000086638 ENSMUST00000130089 4930405A21Rik processed_transcript Interval_161446 chr8 120504646 120505400 + 0 NA intron (ENSMUSG00000031822.20, intron 1 of 15) protein_coding-intron (ENSMUSG00000031822.20, intron 1 of 15) -15592 ENSMUSG00000097983.1 ENSMUSG00000097983 ENSMUST00000182423 Gm26971 sense_intronic Interval_11812 chr1 185628090 185628370 + 0 NA Intergenic Intergenic -116573 ENSMUSG00000103799.1 ENSMUSG00000103799 ENSMUST00000195210 Gm38093 lincRNA Interval_20048 chr10 112723126 112723759 + 0 NA Intergenic Intergenic -3484 ENSMUSG00000100314.6 ENSMUSG00000100314 ENSMUST00000189116 1700010J16Rik lincRNA Interval_20454 chr10 117703579 117704789 + 0 NA intron (ENSMUSG00000020184.15, intron 3 of 9) protein_coding-intron (ENSMUSG00000020184.15, intron 4 of 11) 5838 ENSMUSG00000020184.15 ENSMUSG00000020184 ENSMUST00000151725 Mdm2 protein_coding Interval_89415 chr2 20555513 20556297 + 0 NA intron (ENSMUSG00000036617.17, intron 1 of 2) protein_coding-intron (ENSMUSG00000036617.17, intron 3 of 18) -3899 ENSMUSG00000098575.1 ENSMUSG00000098575 ENSMUST00000183963 Gm27446 misc_RNA Interval_116231 chr4 108902599 108904013 + 0 NA intron (ENSMUSG00000003411.10, intron 2 of 4) protein_coding-intron (ENSMUSG00000003411.10, intron 1 of 3) 30502 ENSMUSG00000082699.1 ENSMUSG00000082699 ENSMUST00000119330 Gm12736 processed_pseudogene Interval_93235 chr2 71352366 71354577 + 0 NA intron (ENSMUSG00000027010.16, intron 2 of 16) protein_coding-intron (ENSMUSG00000027010.16, intron 2 of 17) 14062 ENSMUSG00000027010.16 ENSMUSG00000027010 ENSMUST00000146653 Slc25a12 protein_coding Interval_110348 chr3 157268556 157268920 + 0 NA intron (ENSMUSG00000040037.13, intron 6 of 6) protein_coding-intron (ENSMUSG00000040037.13, intron 6 of 6) -31407 ENSMUSG00000094982.1 ENSMUSG00000094982 ENSMUST00000177876 Gm23725 snRNA Interval_154566 chr8 19636334 19636533 + 0 NA intron (ENSMUSG00000110463.1, intron 3 of 4) lincRNA-intron (ENSMUSG00000110463.1, intron 3 of 4) 28889 ENSMUSG00000110463.1 ENSMUSG00000110463 ENSMUST00000212862 Gm35998 lincRNA Interval_14426 chr10 33481656 33482064 + 0 NA Intergenic Intergenic -4388 ENSMUSG00000112329.1 ENSMUSG00000112329 ENSMUST00000220089 Gm47908 TEC Interval_23169 chr11 20296559 20297512 + 0 NA Intergenic Intergenic -6652 ENSMUSG00000083792.1 ENSMUSG00000083792 ENSMUST00000121298 Rpl12-ps2 processed_pseudogene Interval_3205 chr1 54816599 54817214 + 0 NA intron (ENSMUSG00000052331.14, intron 2 of 7) protein_coding-intron (ENSMUSG00000052331.14, intron 2 of 27) 47688 ENSMUSG00000089245.1 ENSMUSG00000089245 ENSMUST00000158620 Gm24053 miRNA Interval_168455 chr9 80932641 80932928 + 0 NA Intergenic Intergenic -5571 ENSMUSG00000098935.1 ENSMUSG00000098935 ENSMUST00000183833 Gm27225 processed_pseudogene Interval_41064 chr12 110913343 110914095 + 0 NA intron (ENSMUSG00000021275.16, intron 2 of 10) protein_coding-intron (ENSMUSG00000021275.16, intron 2 of 19) 15605 ENSMUSG00000096942.1 ENSMUSG00000096942 ENSMUST00000181233 Rps19-ps6 processed_pseudogene Interval_61878 chr15 84881210 84882080 + 0 NA Intergenic Intergenic 15328 ENSMUSG00000097954.1 ENSMUSG00000097954 ENSMUST00000182243 Gm4217 processed_pseudogene Interval_69038 chr16 90247413 90247642 + 0 NA promoter-TSS (ENSMUSG00000022983.16) protein_coding-promoter-TSS (ENSMUSG00000022983.16) 26773 ENSMUSG00000022982.10 ENSMUSG00000022982 ENSMUST00000232505 Sod1 protein_coding Interval_20463 chr10 117764626 117764997 + 0 NA intron (ENSMUSG00000052798.13, intron 19 of 27) protein_coding-intron (ENSMUSG00000052798.13, intron 19 of 27) -19869 ENSMUSG00000060181.6 ENSMUSG00000060181 ENSMUST00000219482 Slc35e3 protein_coding Interval_68834 chr16 87477453 87477703 + 0 NA intron (ENSMUSG00000025616.14, intron 4 of 4) protein_coding-intron (ENSMUSG00000025616.14, intron 13 of 17) 8492 ENSMUSG00000025613.13 ENSMUSG00000025613 ENSMUST00000176750 Cct8 protein_coding Interval_83062 chr18 80969313 80969923 + 0 NA exon (ENSMUSG00000024565.10, exon 4 of 4) protein_coding-exon (ENSMUSG00000024565.10, exon 4 of 4) 16918 ENSMUSG00000024565.10 ENSMUSG00000024565 ENSMUST00000235746 Sall3 protein_coding Interval_152313 chr7 131660266 131661126 + 0 NA intron (ENSMUSG00000030849.18, intron 2 of 6) protein_coding-intron (ENSMUSG00000030849.18, intron 2 of 6) 14186 ENSMUSG00000109066.1 ENSMUSG00000109066 ENSMUST00000207218 Gm4585 processed_pseudogene Interval_149334 chr7 97514490 97515338 + 0 NA TTS (ENSMUSG00000025133.9) protein_coding-TTS (ENSMUSG00000025133.9) -6894 ENSMUSG00000065360.1 ENSMUSG00000065360 ENSMUST00000083426 Gm24412 snoRNA Interval_62211 chr15 88861758 88862883 + 0 NA exon (ENSMUSG00000035828.11, exon 1 of 6) protein_coding-exon (ENSMUSG00000035828.11, exon 1 of 6) -2600 ENSMUSG00000035828.11 ENSMUSG00000035828 ENSMUST00000229969 Pim3 protein_coding Interval_96105 chr2 119787201 119788185 + 0 NA promoter-TSS (ENSMUSG00000034032.15) protein_coding-promoter-TSS (ENSMUSG00000034032.15) -173 ENSMUSG00000034032.15 ENSMUSG00000034032 ENSMUST00000141800 Rpap1 protein_coding Interval_3832 chr1 63323480 63324405 + 0 NA Intergenic Intergenic -23559 ENSMUSG00000094214.1 ENSMUSG00000094214 ENSMUST00000083151 Gm23448 snRNA Interval_9142 chr1 153999783 154000021 + 0 NA Intergenic Intergenic 6315 ENSMUSG00000101903.1 ENSMUSG00000101903 ENSMUST00000186055 Gm29291 lincRNA Interval_26721 chr11 59991126 59992367 + 0 NA intron (ENSMUSG00000000301.16, intron 1 of 3) protein_coding-intron (ENSMUSG00000000301.16, intron 2 of 6) -20236 ENSMUSG00000000301.16 ENSMUSG00000000301 ENSMUST00000133028 Pemt protein_coding Interval_4560 chr1 75026234 75027769 + 0 NA intron (ENSMUSG00000026162.7, intron 2 of 4) protein_coding-intron (ENSMUSG00000026162.7, intron 2 of 4) 72749 ENSMUSG00000103145.1 ENSMUSG00000103145 ENSMUST00000194616 Gm37744 TEC Interval_54174 chr14 65976666 65976898 + 0 NA TTS (ENSMUSG00000022037.15) protein_coding-TTS (ENSMUSG00000022037.15) 7064 ENSMUSG00000022037.15 ENSMUSG00000022037 ENSMUST00000152903 Clu protein_coding Interval_142423 chr6 141962355 141962791 + 0 NA Intergenic Intergenic -15757 ENSMUSG00000041698.11 ENSMUSG00000041698 ENSMUST00000171651 Slco1a1 protein_coding Interval_22523 chr11 11461221 11462759 + 0 NA promoter-TSS (ENSMUSG00000020191.11) protein_coding-promoter-TSS (ENSMUSG00000020191.11) -104 ENSMUSG00000020191.11 ENSMUSG00000020191 ENSMUST00000109678 Spata48 protein_coding Interval_158039 chr8 78226145 78226361 + 0 NA intron (ENSMUSG00000037101.16, intron 2 of 10) protein_coding-intron (ENSMUSG00000037101.16, intron 5 of 13) 12903 ENSMUSG00000037101.16 ENSMUSG00000037101 ENSMUST00000124713 Ttc29 protein_coding Interval_115255 chr4 94911860 94913388 + 0 NA intron (ENSMUSG00000028575.11, intron 7 of 8) protein_coding-intron (ENSMUSG00000028575.11, intron 7 of 7) 16219 ENSMUSG00000028575.11 ENSMUSG00000028575 ENSMUST00000030309 Eqtn protein_coding Interval_13413 chr10 18022085 18023518 + 0 NA promoter-TSS (ENSMUSG00000078453.3) protein_coding-promoter-TSS (ENSMUSG00000078453.3) 289 ENSMUSG00000078453.3 ENSMUSG00000078453 ENSMUST00000220433 Abracl protein_coding Interval_171104 chr9 114554026 114554461 + 0 NA intron (ENSMUSG00000079259.2, intron 1 of 3) protein_coding-intron (ENSMUSG00000079259.2, intron 1 of 3) 10126 ENSMUSG00000079259.2 ENSMUSG00000079259 ENSMUST00000111816 Trim71 protein_coding Interval_140965 chr6 123256589 123257009 + 0 NA Intergenic Intergenic -5312 ENSMUSG00000030144.4 ENSMUSG00000030144 ENSMUST00000203421 Clec4d protein_coding Interval_95117 chr2 104015226 104017045 + 0 NA intron (ENSMUSG00000046085.7, intron 3 of 4) protein_coding-intron (ENSMUSG00000046085.7, intron 3 of 4) -11713 ENSMUSG00000027180.12 ENSMUSG00000027180 ENSMUST00000102565 Fbxo3 protein_coding Interval_54338 chr14 67789555 67790187 + 0 NA intron (ENSMUSG00000044447.5, intron 31 of 51) protein_coding-intron (ENSMUSG00000044447.5, intron 31 of 51) -24912 ENSMUSG00000044447.5 ENSMUSG00000044447 ENSMUST00000224823 Dock5 protein_coding Interval_133216 chr5 150629446 150629871 + 0 NA intron (ENSMUSG00000029655.17, intron 3 of 3) protein_coding-intron (ENSMUSG00000029655.17, intron 3 of 3) -22775 ENSMUSG00000107096.3 ENSMUSG00000107096 ENSMUST00000202860 Gm43597 lincRNA Interval_46777 chr13 70233932 70234873 + 0 NA intron (ENSMUSG00000113463.1, intron 2 of 3) lincRNA-intron (ENSMUSG00000113463.1, intron 2 of 3) 1580 ENSMUSG00000113463.1 ENSMUSG00000113463 ENSMUST00000222622 4930520P13Rik lincRNA Interval_86784 chr19 43879282 43880902 + 0 NA promoter-TSS (ENSMUSG00000025195.9) protein_coding-promoter-TSS (ENSMUSG00000025195.9) -324 ENSMUSG00000025195.9 ENSMUSG00000025195 ENSMUST00000212157 Dnmbp protein_coding Interval_155253 chr8 28971148 28971581 + 0 NA intron (ENSMUSG00000063626.6, intron 1 of 14) protein_coding-intron (ENSMUSG00000063626.6, intron 1 of 17) 116122 ENSMUSG00000109874.1 ENSMUSG00000109874 ENSMUST00000211467 Gm9911 TEC Interval_23147 chr11 20175032 20175293 + 0 NA Intergenic Intergenic 19573 ENSMUSG00000084442.1 ENSMUSG00000084442 ENSMUST00000122493 Gm26253 snRNA Interval_169472 chr9 97852531 97853616 + 0 NA intron (ENSMUSG00000032452.12, intron 1 of 16) protein_coding-intron (ENSMUSG00000032452.12, intron 1 of 17) 77082 ENSMUSG00000104462.1 ENSMUSG00000104462 ENSMUST00000191863 Gm37661 TEC Interval_31990 chr11 104330661 104331695 + 0 NA exon (ENSMUSG00000018411.17, exon 10 of 10) protein_coding-exon (ENSMUSG00000018411.17, exon 10 of 10) -71817 ENSMUSG00000085134.1 ENSMUSG00000085134 ENSMUST00000137561 Gm11659 antisense Interval_147172 chr7 64042952 64043979 + 0 NA Intergenic Intergenic -2639 ENSMUSG00000108469.1 ENSMUSG00000108469 ENSMUST00000206525 Gm45054 lincRNA Interval_78630 chr18 15847354 15847662 + 0 NA Intergenic Intergenic 14714 ENSMUSG00000058064.6 ENSMUSG00000058064 ENSMUST00000079733 Gm10036 processed_pseudogene Interval_33699 chr11 117972634 117973009 + 0 NA Intergenic Intergenic -3370 ENSMUSG00000053113.3 ENSMUSG00000053113 ENSMUST00000132295 Socs3 protein_coding Interval_5610 chr1 90208293 90209379 + 0 NA intron (ENSMUSG00000044337.5, intron 1 of 1) protein_coding-intron (ENSMUSG00000044337.5, intron 1 of 1) 4830 ENSMUSG00000044337.5 ENSMUSG00000044337 ENSMUST00000159654 Ackr3 protein_coding Interval_7689 chr1 133060325 133060880 + 0 NA intron (ENSMUSG00000101102.1, intron 3 of 3) protein_coding-intron (ENSMUSG00000026447.17, intron 1 of 32) 7803 ENSMUSG00000101102.1 ENSMUSG00000101102 ENSMUST00000186515 Gm28609 antisense Interval_49781 chr13 115077538 115078071 + 0 NA intron (ENSMUSG00000042284.10, intron 1 of 18) protein_coding-intron (ENSMUSG00000042284.10, intron 1 of 28) -11697 ENSMUSG00000114255.1 ENSMUSG00000114255 ENSMUST00000225343 Gm10734 antisense Interval_141353 chr6 127541747 127543207 + 0 NA Intergenic Intergenic -18861 ENSMUSG00000061414.8 ENSMUSG00000061414 ENSMUST00000071563 Cracr2a protein_coding Interval_63632 chr15 102450706 102452737 + 0 NA promoter-TSS (ENSMUSG00000023047.11) protein_coding-promoter-TSS (ENSMUSG00000023047.11) -4842 ENSMUSG00000089168.1 ENSMUSG00000089168 ENSMUST00000158543 Gm24128 snRNA Interval_48295 chr13 97899897 97900111 + 0 NA intron (ENSMUSG00000021662.11, intron 27 of 27) protein_coding-intron (ENSMUSG00000021662.11, intron 35 of 35) -23342 ENSMUSG00000114474.1 ENSMUSG00000114474 ENSMUST00000225575 Gm34388 lincRNA Interval_136376 chr6 53954096 53954346 + 0 NA intron (ENSMUSG00000052955.5, intron 4 of 12) protein_coding-intron (ENSMUSG00000052955.5, intron 4 of 12) 24441 ENSMUSG00000052955.5 ENSMUSG00000052955 ENSMUST00000166545 Cpvl protein_coding Interval_124605 chr5 52262851 52263184 + 0 NA intron (ENSMUSG00000097145.5, intron 3 of 3) processed_transcript-intron (ENSMUSG00000097145.5, intron 3 of 3) 23681 ENSMUSG00000105328.1 ENSMUSG00000105328 ENSMUST00000197541 Gm43180 TEC Interval_69907 chr17 3114179 3115853 + 0 NA promoter-TSS (ENSMUSG00000046201.9) protein_coding-promoter-TSS (ENSMUSG00000046201.9) 44 ENSMUSG00000046201.9 ENSMUSG00000046201 ENSMUST00000232048 Scaf8 protein_coding Interval_39531 chr12 89415154 89415376 + 0 NA intron (ENSMUSG00000066392.12, intron 7 of 18) protein_coding-intron (ENSMUSG00000066392.12, intron 8 of 19) -16071 ENSMUSG00000080680.1 ENSMUSG00000080680 ENSMUST00000117030 Gm23989 miRNA Interval_113873 chr4 59498731 59499623 + 0 NA intron (ENSMUSG00000028382.15, intron 5 of 11) protein_coding-intron (ENSMUSG00000028382.15, intron 5 of 13) -33570 ENSMUSG00000080831.1 ENSMUSG00000080831 ENSMUST00000119529 Gm12529 processed_pseudogene Interval_28373 chr11 75444867 75445910 + 0 NA intron (ENSMUSG00000045374.18, intron 7 of 9) protein_coding-intron (ENSMUSG00000045374.18, intron 7 of 9) -5810 ENSMUSG00000038224.12 ENSMUSG00000038224 ENSMUST00000142094 Serpinf2 protein_coding Interval_132241 chr5 143554921 143555967 + 0 NA intron (ENSMUSG00000083012.9, intron 2 of 2) protein_coding-intron (ENSMUSG00000118332.1, intron 1 of 1) 6736 ENSMUSG00000083012.9 ENSMUSG00000083012 ENSMUST00000198994 Fam220a protein_coding Interval_98720 chr2 154493335 154494145 + 0 NA intron (ENSMUSG00000038533.15, intron 1 of 2) protein_coding-intron (ENSMUSG00000038533.15, intron 1 of 10) -53345 ENSMUSG00000038523.10 ENSMUSG00000038523 ENSMUST00000109709 1700003F12Rik protein_coding Interval_35937 chr12 32182742 32183404 + 0 NA intron (ENSMUSG00000020573.17, intron 10 of 10) protein_coding-intron (ENSMUSG00000020573.17, intron 10 of 10) 25265 ENSMUSG00000020573.17 ENSMUSG00000020573 ENSMUST00000126814 Pik3cg protein_coding Interval_123514 chr5 33104267 33104742 + 0 NA exon (ENSMUSG00000011034.6, exon 1 of 15) protein_coding-exon (ENSMUSG00000011034.6, exon 1 of 15) 285 ENSMUSG00000011034.6 ENSMUSG00000011034 ENSMUST00000011178 Slc5a1 protein_coding Interval_30645 chr11 95648555 95649529 + 0 NA Intergenic Intergenic -17968 ENSMUSG00000038845.11 ENSMUSG00000038845 ENSMUST00000123001 Phb protein_coding Interval_9691 chr1 161070165 161071344 + 0 NA promoter-TSS (ENSMUSG00000026708.16) protein_coding-promoter-TSS (ENSMUSG00000026708.16) -112 ENSMUSG00000026709.10 ENSMUSG00000026709 ENSMUST00000159922 Dars2 protein_coding Interval_102952 chr3 33400106 33400316 + 0 NA Intergenic Intergenic -5364 ENSMUSG00000104203.1 ENSMUSG00000104203 ENSMUST00000191914 Gm37398 TEC Interval_72301 chr17 29044224 29046646 + 0 NA Intergenic Intergenic -8672 ENSMUSG00000117007.1 ENSMUSG00000117007 ENSMUST00000233408 Gm41556 lincRNA Interval_148238 chr7 80041375 80041762 + 0 NA intron (ENSMUSG00000048897.15, intron 1 of 1) protein_coding-intron (ENSMUSG00000048897.15, intron 1 of 4) 4863 ENSMUSG00000108365.1 ENSMUSG00000108365 ENSMUST00000206449 Gm44951 TEC Interval_121754 chr5 6784892 6785125 + 0 NA intron (ENSMUSG00000092094.5, intron 2 of 3) protein_coding-intron (ENSMUSG00000092094.5, intron 1 of 2) -35551 ENSMUSG00000106532.1 ENSMUSG00000106532 ENSMUST00000197343 Gm5714 processed_pseudogene Interval_17560 chr10 77758406 77759010 + 0 NA TTS (ENSMUSG00000094120.1) protein_coding-TTS (ENSMUSG00000094120.1) 974 ENSMUSG00000094120.1 ENSMUSG00000094120 ENSMUST00000168997 Gm3233 protein_coding Interval_47923 chr13 94407208 94407854 + 0 NA intron (ENSMUSG00000021686.6, intron 5 of 26) protein_coding-intron (ENSMUSG00000021686.6, intron 5 of 26) -48608 ENSMUSG00000042857.3 ENSMUSG00000042857 ENSMUST00000221110 Gm9776 bidirectional_promoter_lncRNA Interval_113878 chr4 59526996 59527450 + 0 NA intron (ENSMUSG00000028382.15, intron 1 of 12) protein_coding-intron (ENSMUSG00000028382.15, intron 1 of 13) -5524 ENSMUSG00000080831.1 ENSMUSG00000080831 ENSMUST00000119529 Gm12529 processed_pseudogene Interval_107214 chr3 104673294 104673515 + 0 NA Intergenic Intergenic -3394 ENSMUSG00000101641.1 ENSMUSG00000101641 ENSMUST00000191526 Gm29560 TEC Interval_40345 chr12 104053894 104054303 + 0 NA Intergenic Intergenic -9655 ENSMUSG00000041567.3 ENSMUSG00000041567 ENSMUST00000043915 Serpina12 protein_coding Interval_94548 chr2 92109920 92110902 + 0 NA intron (ENSMUSG00000058318.15, intron 1 of 16) protein_coding-intron (ENSMUSG00000058318.15, intron 1 of 15) -14369 ENSMUSG00000087197.1 ENSMUSG00000087197 ENSMUST00000150482 Gm13780 lincRNA Interval_1664 chr1 30883554 30884556 + 0 NA Intergenic Intergenic -15517 ENSMUSG00000104315.1 ENSMUSG00000104315 ENSMUST00000192050 Gm37906 TEC Interval_116473 chr4 114172776 114173270 + 0 NA intron (ENSMUSG00000057977.10, intron 1 of 3) protein_coding-intron (ENSMUSG00000057977.10, intron 1 of 3) -7147 ENSMUSG00000082825.1 ENSMUSG00000082825 ENSMUST00000119401 Gm15741 processed_pseudogene Interval_171716 chr9 120432826 120434463 + 0 NA TTS (ENSMUSG00000041794.13) protein_coding-TTS (ENSMUSG00000041794.13) 47335 ENSMUSG00000041794.13 ENSMUSG00000041794 ENSMUST00000129168 Myrip protein_coding Interval_88048 chr19 58395450 58396819 + 0 NA intron (ENSMUSG00000025089.15, intron 3 of 9) protein_coding-intron (ENSMUSG00000025089.15, intron 4 of 10) 58332 ENSMUSG00000025089.15 ENSMUSG00000025089 ENSMUST00000135730 Gfra1 protein_coding Interval_88812 chr2 11375302 11376489 + 0 NA intron (ENSMUSG00000102674.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000102674.1, intron 1 of 2) -8444 ENSMUSG00000103223.1 ENSMUSG00000103223 ENSMUST00000192432 Gm37730 TEC Interval_52287 chr14 43933071 43933618 + 0 NA TTS (ENSMUSG00000089901.1) protein_coding-TTS (ENSMUSG00000089901.1) -7653 ENSMUSG00000090265.1 ENSMUSG00000090265 ENSMUST00000161130 Gm9550 processed_pseudogene Interval_170108 chr9 104666510 104666751 + 0 NA intron (ENSMUSG00000032564.16, intron 1 of 8) protein_coding-intron (ENSMUSG00000032564.16, intron 1 of 15) -185120 ENSMUSG00000089116.1 ENSMUSG00000089116 ENSMUST00000158491 Gm25904 snoRNA Interval_97393 chr2 135734123 135734832 + 0 NA intron (ENSMUSG00000039943.16, intron 1 of 2) protein_coding-intron (ENSMUSG00000039943.16, intron 1 of 28) -7353 ENSMUSG00000039943.16 ENSMUSG00000039943 ENSMUST00000147122 Plcb4 protein_coding Interval_174307 chrX 144303337 144304732 + 0 NA Intergenic Intergenic 6244 ENSMUSG00000076117.1 ENSMUSG00000076117 ENSMUST00000102163 Mir680-2 miRNA Interval_140990 chr6 123915218 123915466 + 0 NA Intergenic Intergenic 24151 ENSMUSG00000108198.1 ENSMUSG00000108198 ENSMUST00000204775 Gm44823 unprocessed_pseudogene Interval_107932 chr3 116966351 116966886 + 0 NA exon (ENSMUSG00000033377.14, exon 1 of 1) protein_coding-exon (ENSMUSG00000033377.14, exon 1 of 1) -1649 ENSMUSG00000080907.1 ENSMUSG00000080907 ENSMUST00000117592 4930455H04Rik protein_coding Interval_27389 chr11 67194573 67194906 + 0 NA TTS (ENSMUSG00000085479.1) antisense-TTS (ENSMUSG00000085479.1) 4495 ENSMUSG00000085479.1 ENSMUSG00000085479 ENSMUST00000145346 9430073C21Rik antisense Interval_146571 chr7 46919081 46920286 + 0 NA intron (ENSMUSG00000014402.15, intron 1 of 7) protein_coding-intron (ENSMUSG00000014402.15, intron 1 of 9) 3693 ENSMUSG00000110213.1 ENSMUSG00000110213 ENSMUST00000210849 Gm45628 processed_pseudogene Interval_17424 chr10 76530978 76532025 + 0 NA promoter-TSS (ENSMUSG00000033105.12) protein_coding-promoter-TSS (ENSMUSG00000033105.12) -10381 ENSMUSG00000033105.12 ENSMUSG00000033105 ENSMUST00000162282 Lss protein_coding Interval_146781 chr7 51067553 51069016 + 0 NA Intergenic Intergenic -81376 ENSMUSG00000109173.1 ENSMUSG00000109173 ENSMUST00000207544 Gm21036 processed_pseudogene Interval_129642 chr5 121501410 121501841 + 0 NA exon (ENSMUSG00000062438.4, exon 1 of 1) protein_coding-exon (ENSMUSG00000062438.4, exon 1 of 1) 1810 ENSMUSG00000062438.4 ENSMUSG00000062438 ENSMUST00000079368 Adam1b protein_coding Interval_87558 chr19 53427846 53428301 + 0 NA Intergenic Intergenic -32549 ENSMUSG00000097779.2 ENSMUSG00000097779 ENSMUST00000180442 4833407H14Rik lincRNA Interval_147935 chr7 75752468 75754227 + 0 NA exon (ENSMUSG00000066406.16, exon 37 of 37) protein_coding-exon (ENSMUSG00000066406.16, exon 37 of 37) 4021 ENSMUSG00000076961.1 ENSMUSG00000076961 ENSMUST00000103773 Gm23251 miRNA Interval_83409 chr18 84954761 84955499 + 0 NA intron (ENSMUSG00000034391.12, intron 1 of 9) protein_coding-intron (ENSMUSG00000034391.12, intron 1 of 9) -3606 ENSMUSG00000024645.5 ENSMUSG00000024645 ENSMUST00000235591 Timm21 protein_coding Interval_71836 chr17 26431551 26432537 + 0 NA exon (ENSMUSG00000034413.14, exon 2 of 5) protein_coding-exon (ENSMUSG00000034413.14, exon 2 of 5) 17215 ENSMUSG00000034413.14 ENSMUSG00000034413 ENSMUST00000053020 Neurl1b protein_coding Interval_67368 chr16 48105140 48105704 + 0 NA exon (ENSMUSG00000116986.1, exon 1 of 1) processed_pseudogene-exon (ENSMUSG00000116986.1, exon 1 of 1) 961 ENSMUSG00000116986.1 ENSMUSG00000116986 ENSMUST00000231760 Gm17804 processed_pseudogene Interval_53326 chr14 56186559 56187176 + 0 NA intron (ENSMUSG00000114303.1, intron 2 of 2) antisense-intron (ENSMUSG00000114303.1, intron 2 of 2) 5040 ENSMUSG00000114806.1 ENSMUSG00000114806 ENSMUST00000223969 Gm8963 processed_pseudogene Interval_74734 chr17 56218209 56219433 + 0 NA promoter-TSS (ENSMUSG00000001229.9) protein_coding-promoter-TSS (ENSMUSG00000001229.9) 84 ENSMUSG00000001229.9 ENSMUSG00000001229 ENSMUST00000233586 Dpp9 protein_coding Interval_73722 chr17 42987974 42988279 + 0 NA Intergenic Intergenic -28442 ENSMUSG00000023915.5 ENSMUSG00000023915 ENSMUST00000233482 Tnfrsf21 protein_coding Interval_55445 chr14 87393087 87394308 + 0 NA Intergenic Intergenic -34653 ENSMUSG00000115564.1 ENSMUSG00000115564 ENSMUST00000226140 Gm49199 TEC Interval_47572 chr13 89237353 89239045 + 0 NA intron (ENSMUSG00000034488.14, intron 9 of 10) protein_coding-intron (ENSMUSG00000034488.14, intron 8 of 9) 340220 ENSMUSG00000094463.2 ENSMUSG00000094463 ENSMUST00000178288 Gm8546 processed_pseudogene Interval_81300 chr18 57662165 57662362 + 0 NA intron (ENSMUSG00000058925.11, intron 5 of 5) protein_coding-intron (ENSMUSG00000058925.11, intron 5 of 6) 7295 ENSMUSG00000088776.1 ENSMUSG00000088776 ENSMUST00000158151 Gm26038 snRNA Interval_94831 chr2 95674354 95674559 + 0 NA Intergenic Intergenic -3261 ENSMUSG00000081757.1 ENSMUSG00000081757 ENSMUST00000118285 Gm13798 processed_pseudogene Interval_91294 chr2 37485282 37485560 + 0 NA intron (ENSMUSG00000026915.16, intron 17 of 18) protein_coding-intron (ENSMUSG00000035437.15, intron 6 of 25) -3254 ENSMUSG00000107491.1 ENSMUSG00000107491 ENSMUST00000203017 Gm17893 processed_pseudogene Interval_101895 chr3 10481614 10483268 + 0 NA Intergenic Intergenic -42341 ENSMUSG00000027534.16 ENSMUSG00000027534 ENSMUST00000195822 Snx16 protein_coding Interval_166973 chr9 64258269 64259240 + 0 NA Intergenic Intergenic -22849 ENSMUSG00000032397.7 ENSMUSG00000032397 ENSMUST00000034964 Tipin protein_coding Interval_126572 chr5 90345877 90346128 + 0 NA intron (ENSMUSG00000055204.15, intron 1 of 26) protein_coding-intron (ENSMUSG00000055204.15, intron 1 of 33) 20183 ENSMUSG00000055204.15 ENSMUSG00000055204 ENSMUST00000202226 Ankrd17 protein_coding Interval_56252 chr14 115019227 115019415 + 0 NA Intergenic Intergenic -23558 ENSMUSG00000089726.2 ENSMUSG00000089726 ENSMUST00000134140 Mir17hg lincRNA Interval_19372 chr10 98493931 98494606 + 0 NA Intergenic Intergenic -7395 ENSMUSG00000102310.1 ENSMUSG00000102310 ENSMUST00000192275 Gm37631 TEC Interval_165767 chr9 52298266 52298575 + 0 NA Intergenic Intergenic 7221 ENSMUSG00000077796.1 ENSMUSG00000077796 ENSMUST00000104608 Gm25562 snoRNA Interval_50287 chr14 11663073 11665254 + 0 NA intron (ENSMUSG00000021745.14, intron 1 of 3) protein_coding-intron (ENSMUSG00000021745.14, intron 1 of 29) -103780 ENSMUSG00000114310.1 ENSMUSG00000114310 ENSMUST00000225152 Gm48602 TEC Interval_36495 chr12 46280426 46280732 + 0 NA Intergenic Intergenic -1327 ENSMUSG00000112088.1 ENSMUSG00000112088 ENSMUST00000218273 Gm48531 unprocessed_pseudogene Interval_162345 chr8 127297599 127297871 + 0 NA intron (ENSMUSG00000025812.18, intron 3 of 15) protein_coding-intron (ENSMUSG00000025812.18, intron 3 of 23) 126331 ENSMUSG00000025812.18 ENSMUSG00000025812 ENSMUST00000159940 Pard3 protein_coding Interval_155245 chr8 28740945 28742552 + 0 NA intron (ENSMUSG00000063626.6, intron 7 of 16) protein_coding-intron (ENSMUSG00000063626.6, intron 7 of 17) 148216 ENSMUSG00000097776.1 ENSMUSG00000097776 ENSMUST00000181267 Gm26795 lincRNA Interval_74114 chr17 46609641 46610520 + 0 NA intron (ENSMUSG00000023972.10, intron 1 of 19) protein_coding-intron (ENSMUSG00000023972.10, intron 1 of 19) 35942 ENSMUSG00000003546.10 ENSMUSG00000003546 ENSMUST00000003642 Klc4 protein_coding Interval_171204 chr9 115179714 115180322 + 0 NA TTS (ENSMUSG00000098127.1) antisense-TTS (ENSMUSG00000098127.1) 6040 ENSMUSG00000098127.1 ENSMUSG00000098127 ENSMUST00000183244 Gm4665 antisense Interval_165465 chr9 48466699 48467532 + 0 NA Intergenic Intergenic 13475 ENSMUSG00000032026.7 ENSMUSG00000032026 ENSMUST00000214161 Rexo2 protein_coding Interval_79809 chr18 35243239 35243531 + 0 NA intron (ENSMUSG00000037815.7, intron 9 of 15) protein_coding-intron (ENSMUSG00000037815.7, intron 11 of 17) -5988 ENSMUSG00000037815.7 ENSMUSG00000037815 ENSMUST00000237475 Ctnna1 protein_coding Interval_35612 chr12 25475044 25476382 + 0 NA Intergenic Intergenic 157528 ENSMUSG00000113669.1 ENSMUSG00000113669 ENSMUST00000221270 Gm36723 lincRNA Interval_83708 chr19 3874888 3875493 + 0 NA promoter-TSS (ENSMUSG00000024843.15) protein_coding-promoter-TSS (ENSMUSG00000024843.15) -7517 ENSMUSG00000117912.1 ENSMUSG00000117912 ENSMUST00000235621 Gm50383 antisense Interval_70386 chr17 9654266 9654466 + 0 NA Intergenic Intergenic 15351 ENSMUSG00000046173.3 ENSMUSG00000046173 ENSMUST00000057190 Pabpc6 protein_coding Interval_129309 chr5 118839713 118840325 + 0 NA Intergenic Intergenic 37446 ENSMUSG00000106708.1 ENSMUSG00000106708 ENSMUST00000202790 Gm43782 lincRNA Interval_108181 chr3 122245130 122246327 + 0 NA promoter-TSS (ENSMUSG00000028124.15) protein_coding-promoter-TSS (ENSMUSG00000028124.15) -260 ENSMUSG00000028124.15 ENSMUSG00000028124 ENSMUST00000176761 Gclm protein_coding Interval_139940 chr6 112929792 112930142 + 0 NA intron (ENSMUSG00000030257.16, intron 1 of 21) protein_coding-intron (ENSMUSG00000030257.16, intron 1 of 9) -17070 ENSMUSG00000108103.1 ENSMUSG00000108103 ENSMUST00000204406 Gm44081 lincRNA Interval_63589 chr15 102223265 102223501 + 0 NA TTS (ENSMUSG00000001281.10) protein_coding-TTS (ENSMUSG00000001281.10) 8525 ENSMUSG00000001281.10 ENSMUSG00000001281 ENSMUST00000127014 Itgb7 protein_coding Interval_32006 chr11 104408908 104409959 + 0 NA intron (ENSMUSG00000018412.16, intron 2 of 13) protein_coding-intron (ENSMUSG00000018412.16, intron 3 of 14) 15867 ENSMUSG00000106014.1 ENSMUSG00000106014 ENSMUST00000195891 Gm47315 miRNA Interval_163766 chr9 25496869 25497096 + 0 NA intron (ENSMUSG00000036611.5, intron 2 of 7) protein_coding-intron (ENSMUSG00000036611.5, intron 2 of 7) 14115 ENSMUSG00000036611.5 ENSMUSG00000036611 ENSMUST00000156237 Eepd1 protein_coding Interval_7347 chr1 130245786 130247208 + 0 NA Intergenic Intergenic 34761 ENSMUSG00000086633.1 ENSMUSG00000086633 ENSMUST00000155992 Gm16081 lincRNA Interval_52464 chr14 46723643 46724194 + 0 NA Intergenic Intergenic 22481 ENSMUSG00000115690.1 ENSMUSG00000115690 ENSMUST00000226531 Gm48924 lincRNA Interval_114808 chr4 85437913 85438155 + 0 NA intron (ENSMUSG00000028488.15, intron 7 of 7) protein_coding-intron (ENSMUSG00000028488.15, intron 7 of 7) 61693 ENSMUSG00000028488.15 ENSMUSG00000028488 ENSMUST00000133109 Sh3gl2 protein_coding Interval_86229 chr19 37959222 37959710 + 0 NA intron (ENSMUSG00000048612.16, intron 21 of 53) protein_coding-intron (ENSMUSG00000048612.16, intron 20 of 52) 83933 ENSMUSG00000048612.16 ENSMUSG00000048612 ENSMUST00000226084 Myof protein_coding Interval_10848 chr1 175936280 175936881 + 0 NA Intergenic Intergenic 16251 ENSMUSG00000104158.2 ENSMUSG00000104158 ENSMUST00000194391 Gm38100 protein_coding Interval_64851 chr16 16539306 16539568 + 0 NA intron (ENSMUSG00000022788.16, intron 1 of 8) protein_coding-intron (ENSMUSG00000022788.16, intron 1 of 6) -2886 ENSMUSG00000089861.1 ENSMUSG00000089861 ENSMUST00000160015 Gm16139 processed_pseudogene Interval_162675 chr9 7748484 7748718 + 0 NA Intergenic Intergenic -3124 ENSMUSG00000074516.6 ENSMUSG00000074516 ENSMUST00000213318 Gm10709 processed_pseudogene Interval_159143 chr8 91019628 91020093 + 0 NA intron (ENSMUSG00000056608.14, intron 23 of 37) protein_coding-intron (ENSMUSG00000056608.14, intron 25 of 39) -35404 ENSMUSG00000110377.1 ENSMUSG00000110377 ENSMUST00000210196 Gm45363 TEC Interval_2360 chr1 38467479 38467743 + 0 NA intron (ENSMUSG00000037138.18, intron 5 of 22) protein_coding-intron (ENSMUSG00000037138.18, intron 5 of 7) -19908 ENSMUSG00000102984.1 ENSMUSG00000102984 ENSMUST00000195175 Gm34727 processed_pseudogene Interval_166139 chr9 56980231 56980451 + 0 NA intron (ENSMUSG00000055334.4, intron 7 of 8) protein_coding-intron (ENSMUSG00000055334.4, intron 7 of 8) 29463 ENSMUSG00000055334.4 ENSMUSG00000055334 ENSMUST00000068856 Snupn protein_coding Interval_119655 chr4 139034283 139034846 + 0 NA intron (ENSMUSG00000041143.16, intron 14 of 16) protein_coding-intron (ENSMUSG00000041143.16, intron 13 of 15) 41006 ENSMUSG00000028747.10 ENSMUSG00000028747 ENSMUST00000068036 Htr6 protein_coding Interval_3812 chr1 63222505 63222856 + 0 NA Intergenic Intergenic -8457 ENSMUSG00000046856.13 ENSMUSG00000046856 ENSMUST00000187533 Gpr1 protein_coding Interval_51455 chr14 27680722 27682707 + 0 NA intron (ENSMUSG00000040640.11, intron 1 of 15) protein_coding-intron (ENSMUSG00000040640.11, intron 2 of 15) -32663 ENSMUSG00000114653.1 ENSMUSG00000114653 ENSMUST00000224481 Gm18398 processed_pseudogene Interval_123920 chr5 36553194 36553383 + 0 NA intron (ENSMUSG00000029192.17, intron 2 of 2) protein_coding-intron (ENSMUSG00000029192.17, intron 2 of 13) -45626 ENSMUSG00000029192.17 ENSMUSG00000029192 ENSMUST00000147603 Tbc1d14 protein_coding Interval_93491 chr2 73508798 73510062 + 0 NA intron (ENSMUSG00000075284.10, intron 1 of 2) protein_coding-intron (ENSMUSG00000075284.10, intron 1 of 7) 49725 ENSMUSG00000086069.1 ENSMUSG00000086069 ENSMUST00000145170 Gm13708 lincRNA Interval_15992 chr10 59969919 59970777 + 0 NA Intergenic Intergenic -18514 ENSMUSG00000020108.4 ENSMUSG00000020108 ENSMUST00000020308 Ddit4 protein_coding Interval_109821 chr3 148276139 148276394 + 0 NA Intergenic Intergenic 77952 ENSMUSG00000077441.1 ENSMUSG00000077441 ENSMUST00000104253 Gm23131 snoRNA Interval_113957 chr4 61815047 61815465 + 0 NA Intergenic Intergenic 17774 ENSMUSG00000090090.1 ENSMUSG00000090090 ENSMUST00000120085 Mup-ps16 unprocessed_pseudogene Interval_150096 chr7 105795776 105796212 + 0 NA intron (ENSMUSG00000086414.2, intron 4 of 4) transcribed_processed_pseudogene-intron (ENSMUSG00000086414.2, intron 4 of 4) -8442 ENSMUSG00000036862.15 ENSMUSG00000036862 ENSMUST00000154659 Dchs1 protein_coding Interval_100506 chr2 169734300 169734510 + 0 NA intron (ENSMUSG00000047907.11, intron 1 of 2) protein_coding-intron (ENSMUSG00000047907.11, intron 1 of 1) -106087 ENSMUSG00000103662.1 ENSMUSG00000103662 ENSMUST00000191912 Gm34294 TEC Interval_79758 chr18 34953839 34955600 + 0 NA promoter-TSS (ENSMUSG00000024359.10) protein_coding-promoter-TSS (ENSMUSG00000024359.10) -12006 ENSMUSG00000065904.1 ENSMUSG00000065904 ENSMUST00000083970 Gm26109 snoRNA Interval_7790 chr1 133709474 133711142 + 0 NA intron (ENSMUSG00000026463.17, intron 19 of 19) protein_coding-intron (ENSMUSG00000026463.17, intron 20 of 20) -8427 ENSMUSG00000026463.17 ENSMUSG00000026463 ENSMUST00000128692 Atp2b4 protein_coding Interval_6353 chr1 106199677 106200396 + 0 NA intron (ENSMUSG00000044340.7, intron 1 of 16) protein_coding-intron (ENSMUSG00000044340.7, intron 1 of 16) -19278 ENSMUSG00000103291.1 ENSMUSG00000103291 ENSMUST00000194600 Gm38235 TEC Interval_134211 chr6 23066485 23067147 + 0 NA Intergenic Intergenic 66100 ENSMUSG00000029695.13 ENSMUSG00000029695 ENSMUST00000152280 Aass protein_coding Interval_17252 chr10 75301759 75302024 + 0 NA intron (ENSMUSG00000033444.14, intron 13 of 15) protein_coding-intron (ENSMUSG00000033444.14, intron 13 of 15) -18856 ENSMUSG00000112116.1 ENSMUSG00000112116 ENSMUST00000218702 Gm46234 processed_pseudogene Interval_77853 chr18 4634626 4635857 + 0 NA intron (ENSMUSG00000033960.6, intron 1 of 1) protein_coding-intron (ENSMUSG00000033960.6, intron 1 of 3) 363 ENSMUSG00000033960.6 ENSMUSG00000033960 ENSMUST00000234153 Jcad protein_coding Interval_161314 chr8 119686294 119687325 + 0 NA intron (ENSMUSG00000023336.6, intron 6 of 6) protein_coding-intron (ENSMUSG00000023336.6, intron 6 of 6) -13261 ENSMUSG00000034112.9 ENSMUSG00000034112 ENSMUST00000212454 Atp2c2 protein_coding Interval_156291 chr8 47040031 47040218 + 0 NA intron (ENSMUSG00000038173.15, intron 2 of 6) protein_coding-intron (ENSMUSG00000038173.15, intron 2 of 7) -1947 ENSMUSG00000086190.1 ENSMUSG00000086190 ENSMUST00000130943 4930579M01Rik antisense Interval_156318 chr8 47349314 47349715 + 0 NA intron (ENSMUSG00000038143.16, intron 7 of 7) protein_coding-intron (ENSMUSG00000038143.16, intron 1 of 4) 64323 ENSMUSG00000038143.16 ENSMUSG00000038143 ENSMUST00000181417 Stox2 protein_coding Interval_84313 chr19 10017739 10019284 + 0 NA exon (ENSMUSG00000024663.20, exon 2 of 7) protein_coding-exon (ENSMUSG00000024663.20, exon 2 of 7) 318 ENSMUSG00000024663.20 ENSMUSG00000024663 ENSMUST00000129882 Rab3il1 protein_coding Interval_10758 chr1 174353459 174353804 + 0 NA Intergenic Intergenic -11491 ENSMUSG00000066672.2 ENSMUSG00000066672 ENSMUST00000085862 Olfr417 protein_coding Interval_115602 chr4 101326097 101326500 + 0 NA Intergenic Intergenic -4553 ENSMUSG00000085721.1 ENSMUSG00000085721 ENSMUST00000131864 Gm12796 lincRNA Interval_33027 chr11 113754703 113755091 + 0 NA Intergenic Intergenic -1805 ENSMUSG00000083090.1 ENSMUSG00000083090 ENSMUST00000121468 Gm11736 processed_pseudogene Interval_104902 chr3 78879352 78880347 + 0 NA Intergenic Intergenic 12573 ENSMUSG00000091361.2 ENSMUSG00000091361 ENSMUST00000164923 Gm5277 processed_pseudogene Interval_16149 chr10 61059131 61060161 + 0 NA Intergenic Intergenic -7746 ENSMUSG00000093573.1 ENSMUSG00000093573 ENSMUST00000176406 Gm20610 lincRNA Interval_158602 chr8 84705409 84705660 + 0 NA TTS (ENSMUSG00000034041.5) protein_coding-TTS (ENSMUSG00000034041.5) 2182 ENSMUSG00000001911.16 ENSMUSG00000001911 ENSMUST00000126806 Nfix protein_coding Interval_96402 chr2 122226193 122226428 + 0 NA Intergenic Intergenic 6317 ENSMUSG00000070692.6 ENSMUSG00000070692 ENSMUST00000117447 Rps12-ps10 processed_pseudogene Interval_14567 chr10 35942929 35944037 + 0 NA Intergenic Intergenic -84033 ENSMUSG00000110865.1 ENSMUSG00000110865 ENSMUST00000213320 Gm47046 processed_pseudogene Interval_163959 chr9 29817943 29819059 + 0 NA intron (ENSMUSG00000059974.10, intron 1 of 2) protein_coding-intron (ENSMUSG00000059974.10, intron 1 of 7) -225991 ENSMUSG00000085638.1 ENSMUSG00000085638 ENSMUST00000141752 Gm15521 sense_intronic Interval_20100 chr10 114618166 114618530 + 0 NA intron (ENSMUSG00000050663.8, intron 3 of 18) protein_coding-intron (ENSMUSG00000050663.8, intron 3 of 18) -139399 ENSMUSG00000089934.1 ENSMUSG00000089934 ENSMUST00000161975 4930473D10Rik antisense Interval_163774 chr9 25563293 25564912 + 0 NA intron (ENSMUSG00000036611.5, intron 3 of 7) protein_coding-intron (ENSMUSG00000036611.5, intron 3 of 7) 5703 ENSMUSG00000077697.1 ENSMUSG00000077697 ENSMUST00000104509 Gm25346 snoRNA Interval_172425 chrX 19237038 19238415 + 0 NA exon (ENSMUSG00000097497.1, exon 1 of 3) lincRNA-exon (ENSMUSG00000097497.1, exon 1 of 3) -12463 ENSMUSG00000097497.1 ENSMUSG00000097497 ENSMUST00000180592 Gm26652 lincRNA Interval_27022 chr11 62424612 62425040 + 0 NA intron (ENSMUSG00000018501.17, intron 2 of 14) protein_coding-intron (ENSMUSG00000018501.17, intron 3 of 45) -33782 ENSMUSG00000014245.8 ENSMUSG00000014245 ENSMUST00000147918 Pigl protein_coding Interval_73707 chr17 42902492 42903037 + 0 NA Intergenic Intergenic -71734 ENSMUSG00000061665.7 ENSMUSG00000061665 ENSMUST00000233626 Cd2ap protein_coding Interval_1478 chr1 23958725 23960056 + 0 NA Intergenic Intergenic -46117 ENSMUSG00000102495.1 ENSMUSG00000102495 ENSMUST00000195143 Gm26524 TEC Interval_122335 chr5 21434369 21435594 + 0 NA TTS (ENSMUSG00000047221.5) protein_coding-TTS (ENSMUSG00000047221.5) 9980 ENSMUSG00000047221.5 ENSMUSG00000047221 ENSMUST00000146056 Fam185a protein_coding Interval_163178 chr9 17160885 17161138 + 0 NA Intergenic Intergenic 130966 ENSMUSG00000090602.3 ENSMUSG00000090602 ENSMUST00000164523 Gm5611 processed_pseudogene Interval_141949 chr6 135760739 135761411 + 0 NA intron (ENSMUSG00000030209.14, intron 11 of 14) protein_coding-intron (ENSMUSG00000030209.14, intron 10 of 13) 20078 ENSMUSG00000089263.1 ENSMUSG00000089263 ENSMUST00000158638 Gm22892 miRNA Interval_92350 chr2 59196758 59197465 + 0 NA intron (ENSMUSG00000026991.20, intron 1 of 4) protein_coding-intron (ENSMUSG00000026991.20, intron 1 of 21) 35184 ENSMUSG00000026991.20 ENSMUSG00000026991 ENSMUST00000124127 Pkp4 protein_coding Interval_117310 chr4 122902120 122902384 + 0 NA Intergenic Intergenic -16388 ENSMUSG00000028656.14 ENSMUSG00000028656 ENSMUST00000151041 Cap1 protein_coding Interval_147772 chr7 73479546 73479873 + 0 NA promoter-TSS (ENSMUSG00000078671.11) protein_coding-promoter-TSS (ENSMUSG00000078671.11) -19076 ENSMUSG00000108741.1 ENSMUSG00000108741 ENSMUST00000206316 Gm44553 TEC Interval_156984 chr8 63829064 63829726 + 0 NA Intergenic Intergenic -48801 ENSMUSG00000077153.1 ENSMUSG00000077153 ENSMUST00000103965 Gm24580 snoRNA Interval_148340 chr7 80605031 80606707 + 0 NA intron (ENSMUSG00000030527.15, intron 1 of 3) protein_coding-intron (ENSMUSG00000030527.15, intron 7 of 14) -2086 ENSMUSG00000108643.1 ENSMUSG00000108643 ENSMUST00000206056 Gm44931 TEC Interval_144064 chr7 19256729 19258327 + 0 NA promoter-TSS (ENSMUSG00000089636.1) antisense-promoter-TSS (ENSMUSG00000089636.1) -964 ENSMUSG00000089636.1 ENSMUSG00000089636 ENSMUST00000159981 1700058P15Rik antisense Interval_106509 chr3 96786685 96786952 + 0 NA intron (ENSMUSG00000028098.13, intron 8 of 9) protein_coding-intron (ENSMUSG00000028098.13, intron 7 of 8) 2493 ENSMUSG00000105976.1 ENSMUSG00000105976 ENSMUST00000197286 Gm42782 TEC Interval_46185 chr13 62284810 62285242 + 0 NA Intergenic Intergenic 12265 ENSMUSG00000113081.1 ENSMUSG00000113081 ENSMUST00000221763 Gm3333 transcribed_processed_pseudogene Interval_109325 chr3 138938358 138938588 + 0 NA intron (ENSMUSG00000028149.12, intron 14 of 14) protein_coding-intron (ENSMUSG00000028149.12, intron 13 of 13) 39608 ENSMUSG00000104724.1 ENSMUSG00000104724 ENSMUST00000198292 Gm43162 TEC Interval_110009 chr3 152441010 152441929 + 0 NA intron (ENSMUSG00000039068.16, intron 4 of 6) protein_coding-intron (ENSMUSG00000039068.16, intron 4 of 13) 45337 ENSMUSG00000039068.16 ENSMUSG00000039068 ENSMUST00000135044 Zzz3 protein_coding Interval_143544 chr7 12457598 12457900 + 0 NA intron (ENSMUSG00000092583.1, intron 2 of 4) unprocessed_pseudogene-intron (ENSMUSG00000092583.1, intron 2 of 4) 12391 ENSMUSG00000092583.1 ENSMUSG00000092583 ENSMUST00000173045 Vmn2r-ps53 unprocessed_pseudogene Interval_89244 chr2 18368428 18368624 + 0 NA intron (ENSMUSG00000026740.12, intron 1 of 11) protein_coding-intron (ENSMUSG00000026740.12, intron 1 of 10) -29537 ENSMUSG00000082520.2 ENSMUSG00000082520 ENSMUST00000118436 Gm13349 processed_pseudogene Interval_61796 chr15 84211914 84212782 + 0 NA intron (ENSMUSG00000022437.7, intron 14 of 14) protein_coding-intron (ENSMUSG00000022437.7, intron 14 of 14) 10506 ENSMUSG00000022437.7 ENSMUSG00000022437 ENSMUST00000229751 Samm50 protein_coding Interval_102224 chr3 19616868 19617593 + 0 NA intron (ENSMUSG00000082766.1, intron 1 of 1) protein_coding-intron (ENSMUSG00000082766.1, intron 1 of 1) 11447 ENSMUSG00000082766.1 ENSMUSG00000082766 ENSMUST00000119133 1700064H15Rik protein_coding Interval_149019 chr7 92093440 92094122 + 0 NA intron (ENSMUSG00000109382.1, intron 6 of 6) protein_coding-intron (ENSMUSG00000052572.19, intron 12 of 22) -11245 ENSMUSG00000108826.1 ENSMUSG00000108826 ENSMUST00000207844 4931412I15Rik TEC Interval_89219 chr2 18145067 18145771 + 0 NA intron (ENSMUSG00000026743.16, intron 3 of 4) protein_coding-intron (ENSMUSG00000026743.16, intron 8 of 22) -13268 ENSMUSG00000064964.1 ENSMUSG00000064964 ENSMUST00000083030 Gm25147 snRNA Interval_94403 chr2 90775519 90775974 + 0 NA exon (ENSMUSG00000008200.15, exon 1 of 2) protein_coding-exon (ENSMUSG00000008200.15, exon 1 of 2) -6981 ENSMUSG00000040812.14 ENSMUSG00000040812 ENSMUST00000149361 Agbl2 protein_coding Interval_63452 chr15 101180694 101181708 + 0 NA intron (ENSMUSG00000000532.11, intron 1 of 8) protein_coding-intron (ENSMUSG00000000532.11, intron 1 of 8) 7134 ENSMUSG00000000532.11 ENSMUSG00000000532 ENSMUST00000000544 Acvr1b protein_coding Interval_157095 chr8 65108173 65108671 + 0 NA exon (ENSMUSG00000074300.4, exon 2 of 3) protein_coding-exon (ENSMUSG00000074300.4, exon 2 of 3) -14379 ENSMUSG00000109620.1 ENSMUSG00000109620 ENSMUST00000211412 Gm48810 processed_pseudogene Interval_170704 chr9 110197954 110198669 + 0 NA intron (ENSMUSG00000032481.17, intron 21 of 24) protein_coding-intron (ENSMUSG00000032481.17, intron 21 of 27) -38083 ENSMUSG00000032481.17 ENSMUSG00000032481 ENSMUST00000200426 Smarcc1 protein_coding Interval_60198 chr15 67471905 67472664 + 0 NA Intergenic Intergenic 245515 ENSMUSG00000102069.1 ENSMUSG00000102069 ENSMUST00000187233 1700012I11Rik lincRNA Interval_174151 chrX 136666470 136667724 + 0 NA exon (ENSMUSG00000044550.11, exon 2 of 3) protein_coding-exon (ENSMUSG00000044550.11, exon 2 of 3) 34555 ENSMUSG00000080874.1 ENSMUSG00000080874 ENSMUST00000117153 Gm15010 processed_pseudogene Interval_92605 chr2 61322889 61323173 + 0 NA Intergenic Intergenic 42753 ENSMUSG00000077464.1 ENSMUSG00000077464 ENSMUST00000104276 Gm26422 snoRNA Interval_98646 chr2 153794531 153796349 + 0 NA TTS (ENSMUSG00000044083.12) protein_coding-TTS (ENSMUSG00000044083.12) 14548 ENSMUSG00000044083.12 ENSMUSG00000044083 ENSMUST00000175856 Efcab8 protein_coding Interval_43317 chr13 29059595 29060271 + 0 NA Intergenic Intergenic 45534 ENSMUSG00000086363.7 ENSMUSG00000086363 ENSMUST00000145801 A330102I10Rik lincRNA Interval_102646 chr3 28852460 28852806 + 0 NA exon (ENSMUSG00000104275.1, exon 2 of 2) lincRNA-exon (ENSMUSG00000104275.1, exon 2 of 2) 1624 ENSMUSG00000104275.1 ENSMUSG00000104275 ENSMUST00000192066 Gm37867 lincRNA Interval_43312 chr13 28957888 28959943 + 0 NA Intergenic Intergenic -5202 ENSMUSG00000076431.4 ENSMUSG00000076431 ENSMUST00000067230 Sox4 protein_coding Interval_137789 chr6 82521833 82522560 + 0 NA intron (ENSMUSG00000030043.11, intron 2 of 4) protein_coding-intron (ENSMUSG00000030043.11, intron 3 of 5) 119862 ENSMUSG00000030043.11 ENSMUSG00000030043 ENSMUST00000203775 Tacr1 protein_coding Interval_3184 chr1 54563078 54563821 + 0 NA Intergenic Intergenic -3254 ENSMUSG00000101130.1 ENSMUSG00000101130 ENSMUST00000185933 Gm19637 processed_pseudogene Interval_165894 chr9 54335734 54337052 + 0 NA intron (ENSMUSG00000046167.5, intron 9 of 9) protein_coding-intron (ENSMUSG00000046167.5, intron 9 of 9) -34823 ENSMUSG00000074343.3 ENSMUSG00000074343 ENSMUST00000149237 Gldnos antisense Interval_31981 chr11 104299101 104299302 + 0 NA exon (ENSMUSG00000018411.17, exon 5 of 13) protein_coding-exon (ENSMUSG00000018411.17, exon 5 of 13) -39840 ENSMUSG00000085134.1 ENSMUSG00000085134 ENSMUST00000137561 Gm11659 antisense Interval_87858 chr19 56601875 56602336 + 0 NA exon (ENSMUSG00000025078.9, exon 11 of 11) protein_coding-exon (ENSMUSG00000025078.9, exon 11 of 11) 31308 ENSMUSG00000025078.9 ENSMUSG00000025078 ENSMUST00000236979 Nhlrc2 protein_coding Interval_94033 chr2 81311583 81312567 + 0 NA Intergenic Intergenic 231267 ENSMUSG00000088194.1 ENSMUSG00000088194 ENSMUST00000157569 Gm23900 rRNA Interval_104214 chr3 60617608 60617949 + 0 NA exon (ENSMUSG00000027763.13, exon 5 of 5) protein_coding-intron (ENSMUSG00000027763.13, intron 4 of 6) 13394 ENSMUSG00000104125.1 ENSMUSG00000104125 ENSMUST00000195434 Gm37488 TEC Interval_171059 chr9 114051950 114052291 + 0 NA Intergenic Intergenic -5020 ENSMUSG00000086596.2 ENSMUSG00000086596 ENSMUST00000135338 Susd5 protein_coding Interval_132789 chr5 147893081 147895730 + 0 NA intron (ENSMUSG00000029650.10, intron 1 of 5) protein_coding-intron (ENSMUSG00000029650.10, intron 1 of 5) -14536 ENSMUSG00000029650.10 ENSMUSG00000029650 ENSMUST00000138244 Slc46a3 protein_coding Interval_105871 chr3 89848726 89849028 + 0 NA intron (ENSMUSG00000046280.9, intron 2 of 5) protein_coding-intron (ENSMUSG00000046280.9, intron 2 of 5) 10988 ENSMUSG00000046280.9 ENSMUSG00000046280 ENSMUST00000197454 She protein_coding Interval_164458 chr9 37176873 37177812 + 0 NA Intergenic Intergenic -4348 ENSMUSG00000077483.1 ENSMUSG00000077483 ENSMUST00000104295 Gm25273 snoRNA Interval_36422 chr12 44284411 44284712 + 0 NA intron (ENSMUSG00000036257.15, intron 2 of 7) protein_coding-intron (ENSMUSG00000036257.15, intron 3 of 9) 15394 ENSMUSG00000036257.15 ENSMUSG00000036257 ENSMUST00000156082 Pnpla8 protein_coding Interval_70516 chr17 11413491 11413863 + 0 NA intron (ENSMUSG00000023826.16, intron 3 of 10) protein_coding-intron (ENSMUSG00000023826.16, intron 4 of 6) -126912 ENSMUSG00000104527.1 ENSMUSG00000104527 ENSMUST00000195853 Gm37332 TEC Interval_48546 chr13 100015239 100016432 + 0 NA promoter-TSS (ENSMUSG00000021646.9) protein_coding-promoter-TSS (ENSMUSG00000021646.9) -40519 ENSMUSG00000021646.9 ENSMUSG00000021646 ENSMUST00000221846 Mccc2 protein_coding Interval_129611 chr5 121315146 121315428 + 0 NA promoter-TSS (ENSMUSG00000042744.16) protein_coding-promoter-TSS (ENSMUSG00000042744.16) 29057 ENSMUSG00000042744.16 ENSMUSG00000042744 ENSMUST00000130655 Hectd4 protein_coding Interval_112600 chr4 43492358 43494030 + 0 NA promoter-TSS (ENSMUSG00000028461.12) protein_coding-promoter-TSS (ENSMUSG00000028461.12) -131 ENSMUSG00000115420.1 ENSMUSG00000115420 ENSMUST00000226420 Rmrp lincRNA Interval_173924 chrX 112310945 112311902 + 0 NA promoter-TSS (ENSMUSG00000025525.12) protein_coding-promoter-TSS (ENSMUSG00000025525.12) 75 ENSMUSG00000025525.12 ENSMUSG00000025525 ENSMUST00000113415 Apool protein_coding Interval_119110 chr4 135607462 135607653 + 0 NA Intergenic Intergenic -19261 ENSMUSG00000086788.2 ENSMUSG00000086788 ENSMUST00000148529 1700029M20Rik lincRNA Interval_166878 chr9 63609122 63609468 + 0 NA intron (ENSMUSG00000037257.8, intron 1 of 9) protein_coding-intron (ENSMUSG00000037257.8, intron 1 of 9) -6878 ENSMUSG00000037801.13 ENSMUSG00000037801 ENSMUST00000170960 Iqch protein_coding Interval_19805 chr10 109439292 109440049 + 0 NA Intergenic Intergenic -53183 ENSMUSG00000112253.1 ENSMUSG00000112253 ENSMUST00000219849 Gm47329 processed_pseudogene Interval_47532 chr13 86590205 86591126 + 0 NA Intergenic Intergenic 135267 ENSMUSG00000095933.1 ENSMUSG00000095933 ENSMUST00000177693 Gm25700 miRNA Interval_60911 chr15 77807258 77807899 + 0 NA exon (ENSMUSG00000022443.17, exon 3 of 3) protein_coding-exon (ENSMUSG00000022443.17, exon 3 of 3) -26445 ENSMUSG00000022443.17 ENSMUSG00000022443 ENSMUST00000134878 Myh9 protein_coding Interval_55200 chr14 79288211 79288475 + 0 NA TTS (ENSMUSG00000022018.7) protein_coding-TTS (ENSMUSG00000022018.7) 13302 ENSMUSG00000022018.7 ENSMUSG00000022018 ENSMUST00000022595 Rgcc protein_coding Interval_33407 chr11 116398133 116400018 + 0 NA intron (ENSMUSG00000052949.14, intron 1 of 17) protein_coding-intron (ENSMUSG00000052949.14, intron 1 of 18) 16325 ENSMUSG00000081929.1 ENSMUSG00000081929 ENSMUST00000121547 Rps11-ps2 processed_pseudogene Interval_23915 chr11 28272291 28272773 + 0 NA Intergenic Intergenic 67282 ENSMUSG00000032889.7 ENSMUSG00000032889 ENSMUST00000042595 Gm6685 processed_pseudogene Interval_166610 chr9 61302724 61303375 + 0 NA Intergenic Intergenic -9240 ENSMUSG00000111658.1 ENSMUSG00000111658 ENSMUST00000213377 B930092H01Rik lincRNA Interval_100661 chr2 170877290 170877891 + 0 NA intron (ENSMUSG00000027560.4, intron 7 of 7) protein_coding-intron (ENSMUSG00000027560.4, intron 7 of 7) 77234 ENSMUSG00000080955.1 ENSMUSG00000080955 ENSMUST00000117955 Gm14263 processed_pseudogene Interval_100964 chr2 173672406 173673313 + 0 NA intron (ENSMUSG00000027519.10, intron 2 of 5) protein_coding-intron (ENSMUSG00000027519.10, intron 2 of 6) 13099 ENSMUSG00000027519.10 ENSMUSG00000027519 ENSMUST00000109110 Rab22a protein_coding Interval_33701 chr11 117983396 117983931 + 0 NA Intergenic Intergenic -14212 ENSMUSG00000053113.3 ENSMUSG00000053113 ENSMUST00000132295 Socs3 protein_coding Interval_168614 chr9 84158813 84159445 + 0 NA Intergenic Intergenic -29226 ENSMUSG00000077666.1 ENSMUSG00000077666 ENSMUST00000104478 Gm26146 snRNA Interval_91136 chr2 35392133 35392937 + 0 NA intron (ENSMUSG00000079421.8, intron 1 of 5) protein_coding-intron (ENSMUSG00000079421.8, intron 1 of 4) 4640 ENSMUSG00000079421.8 ENSMUSG00000079421 ENSMUST00000113009 4930402F06Rik protein_coding Interval_105200 chr3 83787119 83787390 + 0 NA intron (ENSMUSG00000097250.1, intron 1 of 2) antisense-intron (ENSMUSG00000097250.1, intron 1 of 2) 2702 ENSMUSG00000097250.1 ENSMUSG00000097250 ENSMUST00000180472 Gm26771 antisense Interval_57470 chr15 11461318 11462453 + 0 NA Intergenic Intergenic -62284 ENSMUSG00000022241.6 ENSMUSG00000022241 ENSMUST00000226904 Tars protein_coding Interval_80249 chr18 38542087 38543738 + 0 NA Intergenic Intergenic -39938 ENSMUSG00000118296.1 ENSMUSG00000118296 ENSMUST00000236625 Gm19100 processed_pseudogene Interval_120499 chr4 149013711 149014696 + 0 NA TTS (ENSMUSG00000028975.16) protein_coding-TTS (ENSMUSG00000028975.16) 53843 ENSMUSG00000086740.1 ENSMUSG00000086740 ENSMUST00000153443 Gm17029 antisense Interval_84320 chr19 10071277 10072545 + 0 NA promoter-TSS (ENSMUSG00000024665.8) protein_coding-promoter-TSS (ENSMUSG00000024665.8) -724 ENSMUSG00000024665.8 ENSMUSG00000024665 ENSMUST00000235937 Fads2 protein_coding Interval_150612 chr7 112806634 112807926 + 0 NA TTS (ENSMUSG00000055320.18) protein_coding-TTS (ENSMUSG00000055320.18) 93329 ENSMUSG00000106046.1 ENSMUSG00000106046 ENSMUST00000199696 Gm44462 miRNA Interval_26061 chr11 53849083 53850335 + 0 NA intron (ENSMUSG00000081769.9, intron 1 of 3) protein_coding-intron (ENSMUSG00000081769.9, intron 2 of 3) 339 ENSMUSG00000081769.9 ENSMUSG00000081769 ENSMUST00000121435 Gm12216 protein_coding Interval_58991 chr15 41451690 41452328 + 0 NA intron (ENSMUSG00000022307.16, intron 1 of 15) protein_coding-intron (ENSMUSG00000022307.16, intron 1 of 15) -208851 ENSMUSG00000116178.1 ENSMUSG00000116178 ENSMUST00000229823 Gm49529 processed_pseudogene Interval_97360 chr2 135387908 135388673 + 0 NA intron (ENSMUSG00000051177.16, intron 31 of 31) protein_coding-intron (ENSMUSG00000051177.16, intron 31 of 31) -172674 ENSMUSG00000085247.1 ENSMUSG00000085247 ENSMUST00000138303 4930545L23Rik antisense Interval_173719 chrX 102725890 102726138 + 0 NA promoter-TSS (ENSMUSG00000080845.1) processed_pseudogene-promoter-TSS (ENSMUSG00000080845.1) -265 ENSMUSG00000080845.1 ENSMUSG00000080845 ENSMUST00000120192 Gm9115 processed_pseudogene Interval_55420 chr14 87044324 87046000 + 0 NA intron (ENSMUSG00000022021.14, intron 3 of 15) protein_coding-intron (ENSMUSG00000022021.14, intron 4 of 27) 96073 ENSMUSG00000022021.14 ENSMUSG00000022021 ENSMUST00000226134 Diaph3 protein_coding Interval_148267 chr7 80188722 80189435 + 0 NA intron (ENSMUSG00000030539.13, intron 1 of 12) protein_coding-intron (ENSMUSG00000030539.13, intron 1 of 14) -9363 ENSMUSG00000030539.13 ENSMUSG00000030539 ENSMUST00000123023 Sema4b protein_coding Interval_45931 chr13 59400877 59402018 + 0 NA Intergenic Intergenic 7854 ENSMUSG00000114200.1 ENSMUSG00000114200 ENSMUST00000225350 Gm34721 lincRNA Interval_17235 chr10 75183948 75184516 + 0 NA exon (ENSMUSG00000009681.10, exon 23 of 23) protein_coding-exon (ENSMUSG00000009681.10, exon 23 of 23) 7856 ENSMUSG00000009681.10 ENSMUSG00000009681 ENSMUST00000219807 Bcr protein_coding Interval_126049 chr5 77094551 77095707 + 0 NA intron (ENSMUSG00000059325.14, intron 1 of 2) protein_coding-intron (ENSMUSG00000059325.14, intron 1 of 2) 124 ENSMUSG00000059325.14 ENSMUSG00000059325 ENSMUST00000081964 Hopx protein_coding Interval_71597 chr17 24761071 24761544 + 0 NA Intergenic Intergenic 8291 ENSMUSG00000039628.9 ENSMUSG00000039628 ENSMUST00000234202 Hs3st6 protein_coding Interval_151428 chr7 122346925 122347747 + 0 NA intron (ENSMUSG00000052889.11, intron 2 of 17) protein_coding-intron (ENSMUSG00000052889.11, intron 2 of 16) -14664 ENSMUSG00000108522.1 ENSMUSG00000108522 ENSMUST00000206841 Gm44664 TEC Interval_46355 chr13 64169688 64170397 + 0 NA exon (ENSMUSG00000021476.9, exon 2 of 8) protein_coding-exon (ENSMUSG00000021476.9, exon 2 of 8) -14461 ENSMUSG00000021476.9 ENSMUSG00000021476 ENSMUST00000223377 Habp4 protein_coding Interval_30594 chr11 95309431 95312121 + 0 NA promoter-TSS (ENSMUSG00000038909.16) protein_coding-promoter-TSS (ENSMUSG00000038909.16) 347 ENSMUSG00000085143.1 ENSMUSG00000085143 ENSMUST00000122837 Gm11520 antisense Interval_97399 chr2 135764545 135765109 + 0 NA promoter-TSS (ENSMUSG00000039943.16) protein_coding-promoter-TSS (ENSMUSG00000039943.16) 22997 ENSMUSG00000039943.16 ENSMUSG00000039943 ENSMUST00000147122 Plcb4 protein_coding Interval_172058 chr9 124126631 124127199 + 0 NA exon (ENSMUSG00000079227.10, exon 2 of 2) protein_coding-exon (ENSMUSG00000079227.10, exon 2 of 2) 231 ENSMUSG00000079227.10 ENSMUSG00000079227 ENSMUST00000097855 Ccr5 protein_coding Interval_110503 chr3 159884964 159885618 + 0 NA intron (ENSMUSG00000028173.10, intron 2 of 6) protein_coding-intron (ENSMUSG00000028173.10, intron 2 of 11) 9445 ENSMUSG00000105990.1 ENSMUSG00000105990 ENSMUST00000199465 Gm43307 TEC Interval_75459 chr17 66711125 66711691 + 0 NA intron (ENSMUSG00000033278.10, intron 21 of 30) protein_coding-intron (ENSMUSG00000033278.10, intron 23 of 32) -3046 ENSMUSG00000114563.1 ENSMUSG00000114563 ENSMUST00000224424 1700016K05Rik antisense Interval_90565 chr2 31178229 31180580 + 0 NA intron (ENSMUSG00000000194.13, intron 9 of 13) protein_coding-intron (ENSMUSG00000000194.13, intron 9 of 17) -10287 ENSMUSG00000088891.1 ENSMUSG00000088891 ENSMUST00000158266 Gm22516 snoRNA Interval_161119 chr8 117600763 117602022 + 0 NA intron (ENSMUSG00000034330.10, intron 22 of 32) protein_coding-intron (ENSMUSG00000034330.10, intron 22 of 32) -54366 ENSMUSG00000092818.2 ENSMUSG00000092818 ENSMUST00000175077 Gm27361 miRNA Interval_137667 chr6 78311250 78311471 + 0 NA Intergenic Intergenic -59297 ENSMUSG00000071356.7 ENSMUSG00000071356 ENSMUST00000204760 Reg3b protein_coding Interval_112461 chr4 41376454 41377240 + 0 NA intron (ENSMUSG00000028437.14, intron 1 of 3) protein_coding-intron (ENSMUSG00000028437.14, intron 3 of 6) 5599 ENSMUSG00000028437.14 ENSMUSG00000028437 ENSMUST00000132235 Ubap1 protein_coding Interval_132967 chr5 148999541 149000406 + 0 NA intron (ENSMUSG00000085971.4, intron 1 of 3) processed_transcript-intron (ENSMUSG00000085971.4, intron 1 of 3) -3464 ENSMUSG00000085237.2 ENSMUSG00000085237 ENSMUST00000202229 Gm15406 lincRNA Interval_126532 chr5 89830049 89830524 + 0 NA intron (ENSMUSG00000043635.12, intron 3 of 21) protein_coding-intron (ENSMUSG00000043635.12, intron 3 of 21) 1415 ENSMUSG00000077175.1 ENSMUSG00000077175 ENSMUST00000103987 Gm25758 snoRNA Interval_91346 chr2 37948282 37949179 + 0 NA intron (ENSMUSG00000035392.17, intron 9 of 9) protein_coding-intron (ENSMUSG00000035392.17, intron 12 of 21) 70437 ENSMUSG00000107586.1 ENSMUSG00000107586 ENSMUST00000204461 Gm44283 TEC Interval_173373 chrX 85573445 85574523 + 0 NA promoter-TSS (ENSMUSG00000035476.9) protein_coding-promoter-TSS (ENSMUSG00000035476.9) -55 ENSMUSG00000035476.9 ENSMUSG00000035476 ENSMUST00000146063 Tab3 protein_coding Interval_168043 chr9 75558730 75559795 + 0 NA intron (ENSMUSG00000058587.9, intron 1 of 1) protein_coding-intron (ENSMUSG00000058587.9, intron 1 of 9) 395 ENSMUSG00000058587.9 ENSMUSG00000058587 ENSMUST00000217459 Tmod3 protein_coding Interval_168993 chr9 90087912 90088352 + 0 NA Intergenic Intergenic 26527 ENSMUSG00000062270.14 ENSMUSG00000062270 ENSMUST00000185433 Morf4l1 protein_coding Interval_43672 chr13 34859576 34859853 + 0 NA Intergenic Intergenic 6863 ENSMUSG00000114127.1 ENSMUSG00000114127 ENSMUST00000221617 Gm8231 processed_pseudogene Interval_129449 chr5 120246486 120247141 + 0 NA Intergenic Intergenic -8445 ENSMUSG00000106915.1 ENSMUSG00000106915 ENSMUST00000202782 Gm42655 TEC Interval_957 chr1 13455420 13457731 + 0 NA Intergenic Intergenic -48920 ENSMUSG00000101171.1 ENSMUSG00000101171 ENSMUST00000187246 Gm7593 processed_pseudogene Interval_79935 chr18 36052059 36053011 + 0 NA intron (ENSMUSG00000060275.14, intron 2 of 9) protein_coding-intron (ENSMUSG00000060275.14, intron 3 of 7) 16090 ENSMUSG00000060275.14 ENSMUSG00000060275 ENSMUST00000115705 Nrg2 protein_coding Interval_169491 chr9 98417851 98418456 + 0 NA intron (ENSMUSG00000032456.13, intron 4 of 4) protein_coding-intron (ENSMUSG00000032456.13, intron 4 of 4) -4808 ENSMUSG00000046402.10 ENSMUSG00000046402 ENSMUST00000052068 Rbp1 protein_coding Interval_75289 chr17 65717684 65718088 + 0 NA intron (ENSMUSG00000056515.9, intron 2 of 6) protein_coding-intron (ENSMUSG00000056515.9, intron 2 of 6) 54754 ENSMUSG00000056515.9 ENSMUSG00000056515 ENSMUST00000233258 Rab31 protein_coding Interval_14344 chr10 31200968 31202442 + 0 NA Intergenic Intergenic -7568 ENSMUSG00000111396.1 ENSMUSG00000111396 ENSMUST00000213449 Gm7333 processed_pseudogene Interval_110877 chr4 9435421 9435627 + 0 NA intron (ENSMUSG00000087564.1, intron 2 of 3) protein_coding-intron (ENSMUSG00000041216.15, intron 5 of 5) 11675 ENSMUSG00000087564.1 ENSMUSG00000087564 ENSMUST00000155578 Gm11817 antisense Interval_121929 chr5 10005074 10005367 + 0 NA Intergenic Intergenic 36546 ENSMUSG00000106661.1 ENSMUSG00000106661 ENSMUST00000196361 Gm42832 processed_pseudogene Interval_7015 chr1 122086432 122087310 + 0 NA Intergenic Intergenic -103350 ENSMUSG00000100913.1 ENSMUSG00000100913 ENSMUST00000185647 Gm8392 processed_pseudogene Interval_104937 chr3 79150784 79151021 + 0 NA intron (ENSMUSG00000062232.14, intron 3 of 4) protein_coding-intron (ENSMUSG00000062232.14, intron 3 of 3) -45472 ENSMUSG00000064693.1 ENSMUSG00000064693 ENSMUST00000082759 Gm24150 snRNA Interval_29775 chr11 86714609 86715220 + 0 NA intron (ENSMUSG00000047126.17, intron 14 of 31) protein_coding-intron (ENSMUSG00000047126.17, intron 14 of 31) 11569 ENSMUSG00000047126.17 ENSMUSG00000047126 ENSMUST00000133501 Cltc protein_coding Interval_104073 chr3 58207140 58208102 + 0 NA Intergenic Intergenic 43689 ENSMUSG00000104586.1 ENSMUSG00000104586 ENSMUST00000200072 4921539H07Rik lincRNA Interval_151432 chr7 122383868 122384227 + 0 NA intron (ENSMUSG00000052889.11, intron 2 of 17) protein_coding-intron (ENSMUSG00000052889.11, intron 2 of 16) -18408 ENSMUSG00000108317.1 ENSMUSG00000108317 ENSMUST00000206898 Gm44663 TEC Interval_14383 chr10 32147290 32147505 + 0 NA intron (ENSMUSG00000069670.8, intron 3 of 3) protein_coding-intron (ENSMUSG00000069670.8, intron 3 of 6) 119142 ENSMUSG00000112367.1 ENSMUSG00000112367 ENSMUST00000218326 A230081H15Rik TEC Interval_168006 chr9 75365200 75366155 + 0 NA Intergenic Intergenic 7422 ENSMUSG00000111545.1 ENSMUSG00000111545 ENSMUST00000214879 Gm18015 processed_pseudogene Interval_25981 chr11 53310477 53312609 + 0 NA Intergenic Intergenic -11132 ENSMUSG00000020361.13 ENSMUSG00000020361 ENSMUST00000151854 Hspa4 protein_coding Interval_104815 chr3 75069179 75069364 + 0 NA intron (ENSMUSG00000034151.13, intron 13 of 16) protein_coding-intron (ENSMUSG00000034151.13, intron 13 of 16) -44656 ENSMUSG00000102420.1 ENSMUSG00000102420 ENSMUST00000192431 Gm37464 TEC Interval_8447 chr1 139468186 139468405 + 0 NA intron (ENSMUSG00000033952.14, intron 8 of 26) protein_coding-intron (ENSMUSG00000033952.14, intron 8 of 27) 13523 ENSMUSG00000033952.14 ENSMUSG00000033952 ENSMUST00000196272 Aspm protein_coding Interval_121108 chr4 153098789 153099001 + 0 NA Intergenic Intergenic 48048 ENSMUSG00000085648.1 ENSMUSG00000085648 ENSMUST00000151703 Gm13173 lincRNA Interval_4918 chr1 82554490 82555330 + 0 NA intron (ENSMUSG00000067158.9, intron 4 of 6) protein_coding-intron (ENSMUSG00000067158.9, intron 4 of 47) 31882 ENSMUSG00000067158.9 ENSMUSG00000067158 ENSMUST00000135271 Col4a4 protein_coding Interval_117911 chr4 127004451 127006256 + 0 NA Intergenic Intergenic -18174 ENSMUSG00000028820.13 ENSMUSG00000028820 ENSMUST00000125453 Sfpq protein_coding Interval_165257 chr9 45828062 45829654 + 0 NA promoter-TSS (ENSMUSG00000043987.18) protein_coding-promoter-TSS (ENSMUSG00000043987.18) 8077 ENSMUSG00000098194.1 ENSMUSG00000098194 ENSMUST00000182691 Gm7286 processed_pseudogene Interval_128303 chr5 112427468 112427673 + 0 NA intron (ENSMUSG00000058153.15, intron 12 of 15) protein_coding-intron (ENSMUSG00000058153.15, intron 13 of 16) -21856 ENSMUSG00000072722.2 ENSMUSG00000072722 ENSMUST00000100882 Gm6588 protein_coding Interval_37488 chr12 69318519 69318689 + 0 NA intron (ENSMUSG00000020982.9, intron 3 of 10) protein_coding-intron (ENSMUSG00000020982.9, intron 25 of 32) 16203 ENSMUSG00000020978.10 ENSMUSG00000020978 ENSMUST00000154667 Klhdc2 protein_coding Interval_15051 chr10 42225464 42226169 + 0 NA intron (ENSMUSG00000048756.11, intron 2 of 2) protein_coding-intron (ENSMUSG00000048756.11, intron 2 of 3) 32550 ENSMUSG00000048756.11 ENSMUSG00000048756 ENSMUST00000105501 Foxo3 protein_coding Interval_34720 chr12 8916338 8916728 + 0 NA exon (ENSMUSG00000112891.1, exon 2 of 2) lincRNA-exon (ENSMUSG00000112891.1, exon 2 of 2) 3609 ENSMUSG00000112891.1 ENSMUSG00000112891 ENSMUST00000219499 Gm47391 lincRNA Interval_131696 chr5 139353393 139354299 + 0 NA promoter-TSS (ENSMUSG00000029541.12) protein_coding-promoter-TSS (ENSMUSG00000029541.12) 1229 ENSMUSG00000029541.12 ENSMUSG00000029541 ENSMUST00000197955 Cyp2w1 protein_coding Interval_35279 chr12 19626500 19627747 + 0 NA Intergenic Intergenic 20194 ENSMUSG00000113957.1 ENSMUSG00000113957 ENSMUST00000221254 Gm9257 unprocessed_pseudogene Interval_62744 chr15 96588734 96590468 + 0 NA intron (ENSMUSG00000023169.15, intron 7 of 11) protein_coding-intron (ENSMUSG00000023169.15, intron 7 of 15) 52612 ENSMUSG00000023169.15 ENSMUSG00000023169 ENSMUST00000229253 Slc38a1 protein_coding Interval_49418 chr13 111844222 111844478 + 0 NA Intergenic Intergenic 8272 ENSMUSG00000086861.1 ENSMUSG00000086861 ENSMUST00000149661 Gm15325 lincRNA Interval_158251 chr8 80553762 80553955 + 0 NA Intergenic Intergenic -39385 ENSMUSG00000086912.3 ENSMUSG00000086912 ENSMUST00000142188 4930505O20Rik antisense Interval_105644 chr3 88316212 88316703 + 0 NA intron (ENSMUSG00000001416.13, intron 10 of 12) protein_coding-intron (ENSMUSG00000001416.13, intron 10 of 13) -8598 ENSMUSG00000001418.13 ENSMUSG00000001418 ENSMUST00000154381 Glmp protein_coding Interval_46658 chr13 68275552 68275755 + 0 NA Intergenic Intergenic 81172 ENSMUSG00000113050.1 ENSMUSG00000113050 ENSMUST00000221830 Gm8016 lincRNA Interval_48208 chr13 97186169 97187780 + 0 NA intron (ENSMUSG00000021665.9, intron 4 of 5) protein_coding-intron (ENSMUSG00000021665.9, intron 5 of 13) 11321 ENSMUSG00000021665.9 ENSMUSG00000021665 ENSMUST00000222700 Hexb protein_coding Interval_32038 chr11 104619090 104620403 + 0 NA intron (ENSMUSG00000020689.4, intron 1 of 14) protein_coding-intron (ENSMUSG00000020689.4, intron 1 of 14) -17643 ENSMUSG00000020689.4 ENSMUSG00000020689 ENSMUST00000127140 Itgb3 protein_coding Interval_92636 chr2 61759511 61759705 + 0 NA intron (ENSMUSG00000026914.15, intron 3 of 6) protein_coding-intron (ENSMUSG00000026914.15, intron 3 of 11) 2861 ENSMUSG00000092660.1 ENSMUSG00000092660 ENSMUST00000174919 Gm22403 miRNA Interval_29 GL456211.1 162209 162703 + 0 NA NA NA NA NA Interval_125132 chr5 64780217 64781358 + 0 NA intron (ENSMUSG00000097640.7, intron 1 of 4) processed_transcript-intron (ENSMUSG00000097640.7, intron 1 of 4) -22835 ENSMUSG00000029178.14 ENSMUSG00000029178 ENSMUST00000198946 Klf3 protein_coding Interval_141187 chr6 125478049 125478992 + 0 NA promoter-TSS (ENSMUSG00000030342.8) protein_coding-promoter-TSS (ENSMUSG00000030342.8) -3424 ENSMUSG00000101191.6 ENSMUSG00000101191 ENSMUST00000187724 Gm28809 antisense Interval_33448 chr11 116592131 116592919 + 0 NA intron (ENSMUSG00000020804.12, intron 2 of 3) protein_coding-intron (ENSMUSG00000020804.12, intron 2 of 3) -1162 ENSMUSG00000020804.12 ENSMUSG00000020804 ENSMUST00000132601 Aanat protein_coding Interval_52049 chr14 34860506 34861616 + 0 NA intron (ENSMUSG00000041078.7, intron 2 of 15) protein_coding-intron (ENSMUSG00000041078.7, intron 2 of 15) -33548 ENSMUSG00000065481.1 ENSMUSG00000065481 ENSMUST00000083547 Mir346 miRNA Interval_127271 chr5 102031522 102034159 + 0 NA intron (ENSMUSG00000043940.15, intron 2 of 15) protein_coding-intron (ENSMUSG00000043940.15, intron 2 of 66) 25229 ENSMUSG00000105761.1 ENSMUSG00000105761 ENSMUST00000197792 Gm43787 TEC Interval_31373 chr11 100304012 100304684 + 0 NA Intergenic Intergenic 12677 ENSMUSG00000087265.1 ENSMUSG00000087265 ENSMUST00000153030 Gm12349 lincRNA Interval_81340 chr18 58482130 58482991 + 0 NA Intergenic Intergenic -73697 ENSMUSG00000024600.8 ENSMUSG00000024600 ENSMUST00000025500 Slc27a6 protein_coding Interval_113723 chr4 57851533 57852848 + 0 NA intron (ENSMUSG00000038729.24, intron 1 of 3) protein_coding-intron (ENSMUSG00000038729.24, intron 2 of 2) 25305 ENSMUSG00000096195.1 ENSMUSG00000096195 ENSMUST00000179236 Gm26138 snRNA Interval_103426 chr3 41484662 41485799 + 0 NA promoter-TSS (ENSMUSG00000104616.1) processed_pseudogene-promoter-TSS (ENSMUSG00000104616.1) -503 ENSMUSG00000104616.1 ENSMUSG00000104616 ENSMUST00000196501 Gm6069 processed_pseudogene Interval_21648 chr11 3451694 3453752 + 0 NA promoter-TSS (ENSMUSG00000020448.16) protein_coding-promoter-TSS (ENSMUSG00000020448.16) 243 ENSMUSG00000034587.8 ENSMUSG00000034587 ENSMUST00000154397 8430429K09Rik processed_transcript Interval_109980 chr3 152287734 152288432 + 0 NA intron (ENSMUSG00000054942.13, intron 11 of 13) protein_coding-intron (ENSMUSG00000054942.13, intron 9 of 13) -22315 ENSMUSG00000039103.12 ENSMUSG00000039103 ENSMUST00000199752 Nexn protein_coding Interval_21521 chr10 129112782 129113147 + 0 NA promoter-TSS (ENSMUSG00000042801.5) protein_coding-promoter-TSS (ENSMUSG00000042801.5) 4897 ENSMUSG00000042801.5 ENSMUSG00000042801 ENSMUST00000050915 Olfr769 protein_coding Interval_61918 chr15 85232842 85234073 + 0 NA intron (ENSMUSG00000006369.14, intron 8 of 14) protein_coding-intron (ENSMUSG00000006369.14, intron 8 of 16) -29997 ENSMUSG00000006369.14 ENSMUSG00000006369 ENSMUST00000160798 Fbln1 protein_coding Interval_155780 chr8 37497694 37499352 + 0 NA Intergenic Intergenic -97503 ENSMUSG00000109820.1 ENSMUSG00000109820 ENSMUST00000210980 Gm45654 processed_pseudogene Interval_100780 chr2 172495699 172496982 + 0 NA Intergenic Intergenic 13351 ENSMUSG00000081344.5 ENSMUSG00000081344 ENSMUST00000121320 Gm14303 processed_pseudogene Interval_83922 chr19 5616663 5616949 + 0 NA Intergenic Intergenic -12840 ENSMUSG00000024926.10 ENSMUSG00000024926 ENSMUST00000236264 Kat5 protein_coding Interval_32952 chr11 113340264 113341155 + 0 NA intron (ENSMUSG00000041654.15, intron 6 of 9) protein_coding-intron (ENSMUSG00000041654.15, intron 7 of 10) -127268 ENSMUSG00000078251.2 ENSMUSG00000078251 ENSMUST00000105048 Gm16487 pseudogene Interval_74050 chr17 46273290 46274582 + 0 NA intron (ENSMUSG00000012296.16, intron 1 of 1) protein_coding-intron (ENSMUSG00000012296.16, intron 2 of 9) 9069 ENSMUSG00000012296.16 ENSMUSG00000012296 ENSMUST00000224445 Tjap1 protein_coding Interval_118102 chr4 128961319 128963125 + 0 NA promoter-TSS (ENSMUSG00000028789.16) protein_coding-promoter-TSS (ENSMUSG00000028789.16) 206 ENSMUSG00000028789.16 ENSMUSG00000028789 ENSMUST00000156739 Azin2 protein_coding Interval_83237 chr18 82923491 82924279 + 0 NA intron (ENSMUSG00000058881.13, intron 1 of 1) protein_coding-intron (ENSMUSG00000058881.13, intron 1 of 5) -3325 ENSMUSG00000118339.1 ENSMUSG00000118339 ENSMUST00000237056 4930592I03Rik processed_transcript Interval_16455 chr10 62974711 62975192 + 0 NA TTS (ENSMUSG00000036875.15) protein_coding-TTS (ENSMUSG00000036875.15) -6477 ENSMUSG00000020070.18 ENSMUSG00000020070 ENSMUST00000143726 Rufy2 protein_coding Interval_7956 chr1 134846747 134846937 + 0 NA promoter-TSS (ENSMUSG00000073557.12) protein_coding-promoter-TSS (ENSMUSG00000073557.12) 12700 ENSMUSG00000101168.1 ENSMUSG00000101168 ENSMUST00000188123 Gm28892 antisense Interval_161794 chr8 122836182 122837144 + 0 NA exon (ENSMUSG00000110525.1, exon 1 of 1) processed_pseudogene-exon (ENSMUSG00000110525.1, exon 1 of 1) 112 ENSMUSG00000110525.1 ENSMUSG00000110525 ENSMUST00000211899 Gm45893 processed_pseudogene Interval_70448 chr17 10290216 10290519 + 0 NA intron (ENSMUSG00000062078.15, intron 1 of 6) protein_coding-intron (ENSMUSG00000062078.15, intron 1 of 6) 28994 ENSMUSG00000062078.15 ENSMUSG00000062078 ENSMUST00000233684 Qk protein_coding Interval_81510 chr18 61281102 61281984 + 0 NA exon (ENSMUSG00000024575.16, exon 18 of 22) protein_coding-exon (ENSMUSG00000024575.16, exon 18 of 22) 6520 ENSMUSG00000024575.16 ENSMUSG00000024575 ENSMUST00000135688 Pde6a protein_coding Interval_32920 chr11 113120184 113122082 + 0 NA intron (ENSMUSG00000087259.7, intron 1 of 3) lincRNA-intron (ENSMUSG00000087259.7, intron 1 of 2) 51944 ENSMUSG00000087259.7 ENSMUSG00000087259 ENSMUST00000150712 2610035D17Rik lincRNA Interval_97909 chr2 145598107 145598322 + 0 NA intron (ENSMUSG00000063873.10, intron 8 of 16) protein_coding-intron (ENSMUSG00000063873.10, intron 7 of 15) -43232 ENSMUSG00000074753.5 ENSMUSG00000074753 ENSMUST00000136794 Gm14092 antisense Interval_163650 chr9 23212062 23212932 + 0 NA Intergenic Intergenic -10789 ENSMUSG00000031963.8 ENSMUSG00000031963 ENSMUST00000214050 Bmper protein_coding Interval_166525 chr9 60551387 60551726 + 0 NA Intergenic Intergenic 3361 ENSMUSG00000111512.1 ENSMUSG00000111512 ENSMUST00000215435 Gm17853 processed_pseudogene Interval_137858 chr6 82987097 82987519 + 0 NA intron (ENSMUSG00000030041.9, intron 4 of 9) protein_coding-intron (ENSMUSG00000030041.9, intron 4 of 9) 4271 ENSMUSG00000107829.1 ENSMUSG00000107829 ENSMUST00000203283 Gm43985 processed_pseudogene Interval_114225 chr4 68858148 68858571 + 0 NA intron (ENSMUSG00000028351.5, intron 2 of 7) protein_coding-intron (ENSMUSG00000028351.5, intron 2 of 7) -16952 ENSMUSG00000028351.5 ENSMUSG00000028351 ENSMUST00000140572 Brinp1 protein_coding Interval_75430 chr17 66510001 66510636 + 0 NA intron (ENSMUSG00000023460.13, intron 1 of 5) protein_coding-intron (ENSMUSG00000023460.13, intron 1 of 5) 9352 ENSMUSG00000023460.13 ENSMUSG00000023460 ENSMUST00000146279 Rab12 protein_coding Interval_24140 chr11 30677217 30677554 + 0 NA Intergenic Intergenic -27798 ENSMUSG00000060923.5 ENSMUSG00000060923 ENSMUST00000074613 Acyp2 protein_coding Interval_141196 chr6 125521954 125522195 + 0 NA Intergenic Intergenic 27646 ENSMUSG00000101162.2 ENSMUSG00000101162 ENSMUST00000185268 Gm26728 processed_transcript Interval_164758 chr9 41212365 41212837 + 0 NA intron (ENSMUSG00000100837.7, intron 2 of 4) lincRNA-intron (ENSMUSG00000100837.7, intron 2 of 4) -16281 ENSMUSG00000111308.1 ENSMUSG00000111308 ENSMUST00000213107 Gm48710 TEC Interval_115478 chr4 99266337 99266585 + 0 NA Intergenic Intergenic -6210 ENSMUSG00000104479.1 ENSMUSG00000104479 ENSMUST00000195331 Gm10305 TEC Interval_126278 chr5 85989460 85989630 + 0 NA Intergenic Intergenic 16072 ENSMUSG00000106225.1 ENSMUSG00000106225 ENSMUST00000196185 Gm43564 processed_pseudogene Interval_62035 chr15 86017487 86018123 + 0 NA intron (ENSMUSG00000016028.11, intron 1 of 34) protein_coding-intron (ENSMUSG00000016028.11, intron 1 of 34) -56928 ENSMUSG00000035900.18 ENSMUSG00000035900 ENSMUST00000147286 Gramd4 protein_coding Interval_58958 chr15 40922593 40922930 + 0 NA intron (ENSMUSG00000022306.9, intron 4 of 7) protein_coding-intron (ENSMUSG00000022306.9, intron 4 of 7) 15196 ENSMUSG00000116397.1 ENSMUSG00000116397 ENSMUST00000230162 Gm49525 TEC Interval_7329 chr1 129106444 129107667 + 0 NA Intergenic Intergenic -176052 ENSMUSG00000103742.1 ENSMUSG00000103742 ENSMUST00000195110 Gm38240 TEC Interval_25362 chr11 46665819 46666784 + 0 NA Intergenic Intergenic -19342 ENSMUSG00000080970.1 ENSMUSG00000080970 ENSMUST00000117622 Gm12173 unprocessed_pseudogene Interval_28325 chr11 75208065 75208402 + 0 NA intron (ENSMUSG00000045287.6, intron 1 of 1) protein_coding-intron (ENSMUSG00000045287.6, intron 1 of 1) 14450 ENSMUSG00000045287.6 ENSMUSG00000045287 ENSMUST00000102514 Rtn4rl1 protein_coding Interval_172951 chrX 57408872 57409340 + 0 NA promoter-TSS (ENSMUSG00000079584.2) protein_coding-promoter-TSS (ENSMUSG00000079584.2) -48 ENSMUSG00000079584.2 ENSMUSG00000079584 ENSMUST00000114725 Gm364 protein_coding Interval_134078 chr6 18899390 18900694 + 0 NA Intergenic Intergenic 17331 ENSMUSG00000106819.1 ENSMUSG00000106819 ENSMUST00000202002 Gm43498 processed_pseudogene Interval_55895 chr14 101859476 101859802 + 0 NA intron (ENSMUSG00000033060.16, intron 2 of 5) protein_coding-intron (ENSMUSG00000033060.16, intron 4 of 30) 19132 ENSMUSG00000033060.16 ENSMUSG00000033060 ENSMUST00000160038 Lmo7 protein_coding Interval_5343 chr1 87730316 87730742 + 0 NA Intergenic Intergenic -25559 ENSMUSG00000026289.15 ENSMUSG00000026289 ENSMUST00000127884 Atg16l1 protein_coding Interval_53084 chr14 54349588 54350140 + 0 NA exon (ENSMUSG00000105501.1, exon 1 of 1) lincRNA-exon (ENSMUSG00000105501.1, exon 1 of 1) 1772 ENSMUSG00000105501.1 ENSMUSG00000105501 ENSMUST00000200008 5330426L24Rik lincRNA Interval_145488 chr7 35163222 35163459 + 0 NA Intergenic Intergenic -21891 ENSMUSG00000108575.1 ENSMUSG00000108575 ENSMUST00000206742 Gm35665 lincRNA Interval_152814 chr7 138162041 138162327 + 0 NA Intergenic Intergenic -60645 ENSMUSG00000064575.1 ENSMUSG00000064575 ENSMUST00000082641 Gm25798 snRNA Interval_138434 chr6 88189389 88190851 + 0 NA intron (ENSMUSG00000108010.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000108010.1, intron 1 of 2) 561 ENSMUSG00000108010.1 ENSMUSG00000108010 ENSMUST00000203855 Gm38708 lincRNA Interval_122534 chr5 23637779 23638330 + 0 NA intron (ENSMUSG00000062604.11, intron 1 of 3) protein_coding-intron (ENSMUSG00000062604.11, intron 1 of 3) 36327 ENSMUSG00000088359.1 ENSMUSG00000088359 ENSMUST00000157734 Gm24009 rRNA Interval_150886 chr7 116182563 116182769 + 0 NA intron (ENSMUSG00000045659.18, intron 4 of 18) protein_coding-intron (ENSMUSG00000045659.18, intron 2 of 24) -53141 ENSMUSG00000045659.18 ENSMUSG00000045659 ENSMUST00000205446 Plekha7 protein_coding Interval_51766 chr14 32064642 32064844 + 0 NA Intergenic Intergenic 20949 ENSMUSG00000021905.14 ENSMUSG00000021905 ENSMUST00000112000 Dph3 protein_coding Interval_109844 chr3 148895159 148895490 + 0 NA intron (ENSMUSG00000028184.12, intron 2 of 19) protein_coding-intron (ENSMUSG00000028184.12, intron 2 of 2) -93828 ENSMUSG00000104786.1 ENSMUSG00000104786 ENSMUST00000196445 Gm43573 antisense Interval_65333 chr16 21627215 21627915 + 0 NA promoter-TSS (ENSMUSG00000033653.18) protein_coding-promoter-TSS (ENSMUSG00000033653.18) 67015 ENSMUSG00000043391.10 ENSMUSG00000043391 ENSMUST00000232634 2510009E07Rik protein_coding Interval_41293 chr12 112538312 112540428 + 0 NA Intergenic Intergenic -22623 ENSMUSG00000054013.6 ENSMUSG00000054013 ENSMUST00000222836 Tmem179 protein_coding Interval_49743 chr13 114406406 114407381 + 0 NA Intergenic Intergenic -18843 ENSMUSG00000021764.8 ENSMUSG00000021764 ENSMUST00000225978 Ndufs4 protein_coding Interval_104743 chr3 70001584 70001810 + 0 NA Intergenic Intergenic -5916 ENSMUSG00000027788.6 ENSMUSG00000027788 ENSMUST00000053013 Otol1 protein_coding Interval_110891 chr4 9609869 9610311 + 0 NA TTS (ENSMUSG00000028207.18) protein_coding-TTS (ENSMUSG00000028207.18) 33627 ENSMUSG00000028207.18 ENSMUSG00000028207 ENSMUST00000130617 Asph protein_coding Interval_157678 chr8 72261021 72262135 + 0 NA Intergenic Intergenic 21482 ENSMUSG00000003033.15 ENSMUSG00000003033 ENSMUST00000151546 Ap1m1 protein_coding Interval_56136 chr14 106607236 106607661 + 0 NA Intergenic Intergenic 12911 ENSMUSG00000115763.1 ENSMUSG00000115763 ENSMUST00000226553 Gm48974 processed_pseudogene Interval_152987 chr7 140466391 140466683 + 0 NA exon (ENSMUSG00000056883.5, exon 1 of 1) protein_coding-exon (ENSMUSG00000056883.5, exon 1 of 1) 3145 ENSMUSG00000056883.5 ENSMUSG00000056883 ENSMUST00000071755 Olfr533 protein_coding Interval_18914 chr10 93081130 93081950 + 0 NA promoter-TSS (ENSMUSG00000020014.17) protein_coding-promoter-TSS (ENSMUSG00000020014.17) -3711 ENSMUSG00000111013.1 ENSMUSG00000111013 ENSMUST00000214288 Gm32468 lincRNA Interval_85575 chr19 28724702 28724913 + 0 NA Intergenic Intergenic 17744 ENSMUSG00000067351.1 ENSMUSG00000067351 ENSMUST00000087473 Rps15a-ps2 processed_pseudogene Interval_162854 chr9 10437645 10438797 + 0 NA intron (ENSMUSG00000039488.15, intron 2 of 20) protein_coding-intron (ENSMUSG00000039488.15, intron 2 of 24) -19131 ENSMUSG00000039488.15 ENSMUSG00000039488 ENSMUST00000160358 Cntn5 protein_coding Interval_94283 chr2 87479379 87482089 + 0 NA Intergenic Intergenic 16359 ENSMUSG00000025839.3 ENSMUSG00000025839 ENSMUST00000141790 Pramel7 protein_coding Interval_169376 chr9 96785904 96786322 + 0 NA Intergenic Intergenic 20528 ENSMUSG00000101581.6 ENSMUSG00000101581 ENSMUST00000190054 C430002N11Rik processed_transcript Interval_138823 chr6 92219607 92221371 + 0 NA Intergenic Intergenic 24161 ENSMUSG00000005892.4 ENSMUSG00000005892 ENSMUST00000006046 Trh protein_coding Interval_47346 chr13 81718915 81719126 + 0 NA intron (ENSMUSG00000051098.6, intron 1 of 1) protein_coding-intron (ENSMUSG00000051098.6, intron 1 of 1) 6008 ENSMUSG00000114905.1 ENSMUSG00000114905 ENSMUST00000224298 Gm48113 processed_pseudogene Interval_63343 chr15 100457196 100458534 + 0 NA Intergenic Intergenic 8181 ENSMUSG00000084688.1 ENSMUSG00000084688 ENSMUST00000122739 n-R5s43 rRNA Interval_2184 chr1 36908335 36908708 + 0 NA intron (ENSMUSG00000026116.11, intron 1 of 5) protein_coding-intron (ENSMUSG00000026116.11, intron 1 of 40) 8018 ENSMUSG00000102930.1 ENSMUSG00000102930 ENSMUST00000194317 Gm38115 sense_intronic Interval_164309 chr9 35210485 35211647 + 0 NA promoter-TSS (ENSMUSG00000032042.11) protein_coding-promoter-TSS (ENSMUSG00000032042.11) -828 ENSMUSG00000032042.11 ENSMUSG00000032042 ENSMUST00000132799 Srpr protein_coding Interval_94336 chr2 89562576 89563590 + 0 NA Intergenic Intergenic 15364 ENSMUSG00000111456.1 ENSMUSG00000111456 ENSMUST00000214870 Olfr1245 protein_coding Interval_51912 chr14 33855859 33856167 + 0 NA Intergenic Intergenic -44730 ENSMUSG00000115751.1 ENSMUSG00000115751 ENSMUST00000226156 4930503F20Rik lincRNA Interval_64612 chr16 13660595 13661069 + 0 NA intron (ENSMUSG00000022685.9, intron 5 of 23) protein_coding-intron (ENSMUSG00000022685.9, intron 5 of 23) 7306 ENSMUSG00000022685.9 ENSMUSG00000022685 ENSMUST00000229251 Parn protein_coding Interval_98992 chr2 156517741 156518313 + 0 NA intron (ENSMUSG00000027624.20, intron 14 of 20) protein_coding-intron (ENSMUSG00000027624.20, intron 14 of 21) 11633 ENSMUSG00000027624.20 ENSMUSG00000027624 ENSMUST00000137067 Epb41l1 protein_coding Interval_31797 chr11 102936187 102937328 + 0 NA Intergenic Intergenic 9931 ENSMUSG00000045532.5 ENSMUSG00000045532 ENSMUST00000057849 C1ql1 protein_coding Interval_173846 chrX 105922335 105925052 + 0 NA intron (ENSMUSG00000031229.16, intron 1 of 2) protein_coding-intron (ENSMUSG00000031229.16, intron 1 of 5) -48388 ENSMUSG00000031229.16 ENSMUSG00000031229 ENSMUST00000126345 Atrx protein_coding Interval_83432 chr18 85402337 85402548 + 0 NA Intergenic Intergenic 314283 ENSMUSG00000117854.1 ENSMUSG00000117854 ENSMUST00000237113 Gm7612 processed_pseudogene Interval_73651 chr17 42456090 42456486 + 0 NA intron (ENSMUSG00000042256.5, intron 2 of 2) protein_coding-intron (ENSMUSG00000042256.5, intron 3 of 3) 140299 ENSMUSG00000042256.5 ENSMUSG00000042256 ENSMUST00000232968 Ptchd4 protein_coding Interval_19079 chr10 94302104 94302370 + 0 NA Intergenic Intergenic -3534 ENSMUSG00000053420.6 ENSMUSG00000053420 ENSMUST00000065826 Gm4792 protein_coding Interval_46976 chr13 73890365 73890599 + 0 NA Intergenic Intergenic 34228 ENSMUSG00000095943.1 ENSMUSG00000095943 ENSMUST00000175516 Gm25197 miRNA Interval_171114 chr9 114612418 114613321 + 0 NA intron (ENSMUSG00000056167.8, intron 12 of 14) protein_coding-intron (ENSMUSG00000056167.8, intron 12 of 19) -10677 ENSMUSG00000087925.1 ENSMUSG00000087925 ENSMUST00000157300 Gm23232 snRNA Interval_59988 chr15 63052532 63053850 + 0 NA Intergenic Intergenic 72543 ENSMUSG00000106988.1 ENSMUSG00000106988 ENSMUST00000201023 Tsg101-ps processed_pseudogene Interval_151102 chr7 118560987 118561195 + 0 NA exon (ENSMUSG00000042246.5, exon 4 of 16) protein_coding-exon (ENSMUSG00000042246.5, exon 4 of 16) 23595 ENSMUSG00000042246.5 ENSMUSG00000042246 ENSMUST00000139693 Tmc7 protein_coding Interval_31803 chr11 102976068 102976384 + 0 NA Intergenic Intergenic -11839 ENSMUSG00000085338.1 ENSMUSG00000085338 ENSMUST00000138424 2410004I01Rik lincRNA Interval_131447 chr5 137286767 137289853 + 0 NA promoter-TSS (ENSMUSG00000023328.14) protein_coding-promoter-TSS (ENSMUSG00000023328.14) 27 ENSMUSG00000023328.14 ENSMUSG00000023328 ENSMUST00000137126 Ache protein_coding Interval_122908 chr5 27242037 27244580 + 0 NA intron (ENSMUSG00000061576.15, intron 1 of 25) protein_coding-intron (ENSMUSG00000061576.15, intron 1 of 25) 25123 ENSMUSG00000106537.1 ENSMUSG00000106537 ENSMUST00000200263 Gm43502 TEC Interval_17522 chr10 77484081 77485047 + 0 NA Intergenic Intergenic 26647 ENSMUSG00000112818.1 ENSMUSG00000112818 ENSMUST00000218522 Gm35920 lincRNA Interval_173498 chrX 96052564 96054039 + 0 NA Intergenic Intergenic -42756 ENSMUSG00000031207.16 ENSMUSG00000031207 ENSMUST00000135027 Msn protein_coding Interval_22912 chr11 17303127 17303331 + 0 NA Intergenic Intergenic -4810 ENSMUSG00000082797.3 ENSMUSG00000082797 ENSMUST00000117065 Gm12015 processed_pseudogene Interval_71013 chr17 17201175 17201433 + 0 NA Intergenic Intergenic -61046 ENSMUSG00000116802.1 ENSMUSG00000116802 ENSMUST00000231376 Gm5165 lincRNA Interval_69227 chr16 91512286 91514890 + 0 NA exon (ENSMUSG00000084301.1, exon 1 of 1) processed_pseudogene-exon (ENSMUSG00000084301.1, exon 1 of 1) 1045 ENSMUSG00000084301.1 ENSMUSG00000084301 ENSMUST00000117514 Gm7856 processed_pseudogene Interval_90356 chr2 29946481 29946651 + 0 NA intron (ENSMUSG00000019715.14, intron 9 of 15) protein_coding-intron (ENSMUSG00000019715.14, intron 9 of 15) 11138 ENSMUSG00000019715.14 ENSMUSG00000019715 ENSMUST00000127390 Gle1 protein_coding Interval_14587 chr10 36622941 36623621 + 0 NA intron (ENSMUSG00000044499.11, intron 2 of 5) protein_coding-intron (ENSMUSG00000044499.11, intron 2 of 5) -9207 ENSMUSG00000111231.1 ENSMUSG00000111231 ENSMUST00000214665 Gm47054 TEC Interval_9552 chr1 159335350 159336671 + 0 NA intron (ENSMUSG00000040782.12, intron 18 of 19) protein_coding-intron (ENSMUSG00000040782.12, intron 18 of 19) 1809 ENSMUSG00000103186.1 ENSMUSG00000103186 ENSMUST00000193887 Gm37088 TEC Interval_6144 chr1 97993739 97994477 + 0 NA intron (ENSMUSG00000026335.16, intron 1 of 25) protein_coding-intron (ENSMUSG00000026335.16, intron 1 of 25) -44719 ENSMUSG00000089782.1 ENSMUSG00000089782 ENSMUST00000162698 Gm3531 processed_pseudogene Interval_145881 chr7 41347923 41348155 + 0 NA Intergenic Intergenic 12655 ENSMUSG00000082080.3 ENSMUSG00000082080 ENSMUST00000117587 Gm9246 processed_pseudogene Interval_11612 chr1 183289347 183291139 + 0 NA TTS (ENSMUSG00000046836.13) protein_coding-TTS (ENSMUSG00000046836.13) 6985 ENSMUSG00000046836.13 ENSMUSG00000046836 ENSMUST00000192829 Brox protein_coding Interval_14795 chr10 39978160 39979710 + 0 NA intron (ENSMUSG00000038528.15, intron 1 of 2) protein_coding-intron (ENSMUSG00000038528.15, intron 1 of 2) 7704 ENSMUSG00000038528.15 ENSMUSG00000038528 ENSMUST00000170505 Mfsd4b5 protein_coding Interval_32253 chr11 106513326 106513601 + 0 NA intron (ENSMUSG00000040548.16, intron 8 of 10) protein_coding-intron (ENSMUSG00000040548.16, intron 9 of 11) 12218 ENSMUSG00000080540.2 ENSMUSG00000080540 ENSMUST00000116890 Gm22711 snoRNA Interval_23349 chr11 21676944 21677569 + 0 NA intron (ENSMUSG00000020319.9, intron 6 of 8) protein_coding-intron (ENSMUSG00000020319.9, intron 6 of 17) 6800 ENSMUSG00000083761.1 ENSMUSG00000083761 ENSMUST00000119107 Pgam1-ps1 processed_pseudogene Interval_173163 chrX 73690625 73691918 + 0 NA intron (ENSMUSG00000002015.5, intron 4 of 7) protein_coding-intron (ENSMUSG00000002015.5, intron 4 of 7) 15764 ENSMUSG00000019558.14 ENSMUSG00000019558 ENSMUST00000167828 Slc6a8 protein_coding Interval_9277 chr1 155777659 155777882 + 0 NA TTS (ENSMUSG00000033684.14) protein_coding-TTS (ENSMUSG00000033684.14) 1653 ENSMUSG00000033684.14 ENSMUSG00000033684 ENSMUST00000140809 Qsox1 protein_coding Interval_149450 chr7 98682715 98683121 + 0 NA intron (ENSMUSG00000086477.3, intron 3 of 3) transcribed_unitary_pseudogene-intron (ENSMUSG00000086477.3, intron 3 of 3) -2271 ENSMUSG00000109101.1 ENSMUSG00000109101 ENSMUST00000207234 Gm45132 TEC Interval_150279 chr7 109220968 109222080 + 0 NA intron (ENSMUSG00000109001.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000109001.1, intron 1 of 2) 2676 ENSMUSG00000109001.1 ENSMUSG00000109001 ENSMUST00000208274 Gm45024 lincRNA Interval_142901 chr6 146802684 146804384 + 0 NA intron (ENSMUSG00000040187.15, intron 2 of 16) protein_coding-intron (ENSMUSG00000040187.15, intron 2 of 16) 21065 ENSMUSG00000107788.1 ENSMUSG00000107788 ENSMUST00000203844 Gm6266 processed_pseudogene Interval_170287 chr9 106699192 106700153 + 0 NA intron (ENSMUSG00000040661.6, intron 19 of 21) protein_coding-intron (ENSMUSG00000040661.6, intron 19 of 21) -14370 ENSMUSG00000040813.16 ENSMUSG00000040813 ENSMUST00000185645 Tex264 protein_coding Interval_144042 chr7 19157307 19158047 + 0 NA exon (ENSMUSG00000030406.7, exon 13 of 14) protein_coding-exon (ENSMUSG00000030406.7, exon 13 of 14) 7818 ENSMUSG00000040824.3 ENSMUSG00000040824 ENSMUST00000206766 Snrpd2 protein_coding Interval_133436 chr6 5007761 5008926 + 0 NA exon (ENSMUSG00000032827.15, exon 3 of 3) protein_coding-exon (ENSMUSG00000032827.15, exon 3 of 3) 49360 ENSMUSG00000097396.1 ENSMUSG00000097396 ENSMUST00000180645 Gm26556 TEC Interval_67222 chr16 44530503 44531575 + 0 NA intron (ENSMUSG00000022687.12, intron 1 of 18) protein_coding-intron (ENSMUSG00000022687.12, intron 1 of 18) 27090 ENSMUSG00000093046.1 ENSMUSG00000093046 ENSMUST00000175305 Mir3081 miRNA Interval_85734 chr19 30180207 30180667 + 0 NA Intergenic Intergenic 19817 ENSMUSG00000058607.4 ENSMUSG00000058607 ENSMUST00000080982 Rpl31-ps20 processed_pseudogene Interval_33758 chr11 118303561 118304457 + 0 NA intron (ENSMUSG00000017466.9, intron 4 of 4) protein_coding-intron (ENSMUSG00000017466.9, intron 4 of 4) -13937 ENSMUSG00000033909.17 ENSMUSG00000033909 ENSMUST00000151433 Usp36 protein_coding Interval_202 KQ030490.1 77689 77899 + 0 NA NA NA NA NA Interval_139768 chr6 108530744 108533121 + 0 NA intron (ENSMUSG00000030102.11, intron 60 of 61) protein_coding-intron (ENSMUSG00000030102.11, intron 60 of 61) -6245 ENSMUSG00000107458.1 ENSMUSG00000107458 ENSMUST00000203360 Gm44040 antisense Interval_51359 chr14 26994072 26995294 + 0 NA intron (ENSMUSG00000040726.10, intron 1 of 4) protein_coding-intron (ENSMUSG00000040726.10, intron 1 of 4) 267 ENSMUSG00000040726.10 ENSMUSG00000040726 ENSMUST00000035433 Hesx1 protein_coding Interval_142895 chr6 146769667 146769971 + 0 NA intron (ENSMUSG00000001630.13, intron 9 of 13) protein_coding-intron (ENSMUSG00000001630.13, intron 9 of 13) 7238 ENSMUSG00000108108.1 ENSMUSG00000108108 ENSMUST00000203084 Gm44270 TEC Interval_75659 chr17 70175887 70176097 + 0 NA intron (ENSMUSG00000003279.17, intron 2 of 13) protein_coding-intron (ENSMUSG00000003279.17, intron 2 of 14) -250161 ENSMUSG00000117078.1 ENSMUSG00000117078 ENSMUST00000232868 Gm4561 processed_pseudogene Interval_61376 chr15 81199713 81200443 + 0 NA Intergenic Intergenic 9082 ENSMUSG00000116122.1 ENSMUSG00000116122 ENSMUST00000230413 Gm49537 processed_pseudogene Interval_28124 chr11 73000763 73001543 + 0 NA intron (ENSMUSG00000020787.14, intron 1 of 10) protein_coding-intron (ENSMUSG00000020787.14, intron 1 of 11) -8638 ENSMUSG00000020787.14 ENSMUSG00000020787 ENSMUST00000148964 P2rx1 protein_coding Interval_129600 chr5 121229176 121229931 + 0 NA intron (ENSMUSG00000042744.16, intron 1 of 75) protein_coding-intron (ENSMUSG00000042744.16, intron 1 of 75) 22829 ENSMUSG00000029614.13 ENSMUSG00000029614 ENSMUST00000138621 Rpl6 protein_coding Interval_89786 chr2 25428278 25429287 + 0 NA promoter-TSS (ENSMUSG00000026944.18) protein_coding-promoter-TSS (ENSMUSG00000026944.18) 4134 ENSMUSG00000036587.13 ENSMUSG00000036587 ENSMUST00000142156 Fut7 protein_coding Interval_26747 chr11 60187478 60190290 + 0 NA exon (ENSMUSG00000062115.15, exon 3 of 6) protein_coding-exon (ENSMUSG00000062115.15, exon 3 of 6) 11733 ENSMUSG00000098547.1 ENSMUSG00000098547 ENSMUST00000183719 Mir6921 miRNA Interval_49258 chr13 109893481 109893672 + 0 NA intron (ENSMUSG00000021699.17, intron 6 of 15) protein_coding-intron (ENSMUSG00000021699.17, intron 5 of 14) -10233 ENSMUSG00000084651.1 ENSMUSG00000084651 ENSMUST00000122702 Mir1904 miRNA Interval_135242 chr6 37767350 37768750 + 0 NA Intergenic Intergenic -38036 ENSMUSG00000080242.5 ENSMUSG00000080242 ENSMUST00000122373 Atp6v0c-ps2 processed_pseudogene Interval_82017 chr18 67225743 67226880 + 0 NA exon (ENSMUSG00000024524.17, exon 12 of 12) protein_coding-exon (ENSMUSG00000024524.17, exon 12 of 12) 19130 ENSMUSG00000062526.4 ENSMUSG00000062526 ENSMUST00000237631 Mppe1 protein_coding Interval_141533 chr6 128944311 128944608 + 0 NA intron (ENSMUSG00000000248.16, intron 1 of 1) protein_coding-intron (ENSMUSG00000000248.16, intron 1 of 6) -12611 ENSMUSG00000098728.1 ENSMUSG00000098728 ENSMUST00000185190 Gm27336 miRNA Interval_53745 chr14 61376338 61376553 + 0 NA intron (ENSMUSG00000021929.9, intron 10 of 16) protein_coding-intron (ENSMUSG00000021929.9, intron 10 of 16) -3354 ENSMUSG00000021929.9 ENSMUSG00000021929 ENSMUST00000225207 Kpna3 protein_coding Interval_36105 chr12 35853937 35855468 + 0 NA Intergenic Intergenic -35438 ENSMUSG00000114090.1 ENSMUSG00000114090 ENSMUST00000221625 Gm9472 processed_pseudogene Interval_137666 chr6 78252179 78252564 + 0 NA Intergenic Intergenic 36493 ENSMUSG00000108045.1 ENSMUSG00000108045 ENSMUST00000075809 Gm5576 processed_pseudogene Interval_55185 chr14 79124758 79124986 + 0 NA intron (ENSMUSG00000058997.8, intron 37 of 44) protein_coding-intron (ENSMUSG00000058997.8, intron 37 of 44) -18471 ENSMUSG00000115637.1 ENSMUSG00000115637 ENSMUST00000227710 Gm30970 processed_pseudogene Interval_39028 chr12 84555147 84555872 + 0 NA Intergenic Intergenic -14331 ENSMUSG00000021239.12 ENSMUSG00000021239 ENSMUST00000169934 Vsx2 protein_coding Interval_54915 chr14 76194399 76195274 + 0 NA Intergenic Intergenic 42709 ENSMUSG00000095427.2 ENSMUSG00000095427 ENSMUST00000095471 Rps2-ps6 processed_pseudogene Interval_164724 chr9 40817624 40817844 + 0 NA Intergenic Intergenic -3235 ENSMUSG00000110982.1 ENSMUSG00000110982 ENSMUST00000215895 Gm48565 TEC Interval_168038 chr9 75541473 75541909 + 0 NA promoter-TSS (ENSMUSG00000058587.9) protein_coding-promoter-TSS (ENSMUSG00000058587.9) 17966 ENSMUSG00000058587.9 ENSMUSG00000058587 ENSMUST00000217459 Tmod3 protein_coding Interval_152934 chr7 139894109 139895419 + 0 NA promoter-TSS (ENSMUSG00000066129.15) protein_coding-promoter-TSS (ENSMUSG00000066129.15) -6413 ENSMUSG00000109710.1 ENSMUSG00000109710 ENSMUST00000209974 Gm4974 processed_pseudogene Interval_96574 chr2 125837965 125838312 + 0 NA intron (ENSMUSG00000027206.13, intron 9 of 12) protein_coding-intron (ENSMUSG00000027206.13, intron 9 of 12) 20925 ENSMUSG00000027206.13 ENSMUSG00000027206 ENSMUST00000152683 Cops2 protein_coding Interval_4668 chr1 75887733 75889157 + 0 NA Intergenic Intergenic 130311 ENSMUSG00000099996.1 ENSMUSG00000099996 ENSMUST00000188786 Gm29065 lincRNA Interval_111087 chr4 11784551 11784764 + 0 NA exon (ENSMUSG00000028217.11, exon 8 of 18) protein_coding-exon (ENSMUSG00000028217.11, exon 8 of 18) 26464 ENSMUSG00000028217.11 ENSMUSG00000028217 ENSMUST00000108303 Cdh17 protein_coding Interval_105389 chr3 85923935 85925161 + 0 NA Intergenic Intergenic 8765 ENSMUSG00000044330.8 ENSMUSG00000044330 ENSMUST00000054148 Gm9790 processed_pseudogene Interval_117470 chr4 123956496 123957802 + 0 NA Intergenic Intergenic 30915 ENSMUSG00000082515.1 ENSMUSG00000082515 ENSMUST00000118389 Gm12902 processed_pseudogene Interval_122030 chr5 14308214 14308749 + 0 NA Intergenic Intergenic 66019 ENSMUSG00000106310.1 ENSMUSG00000106310 ENSMUST00000197397 Gm43523 TEC Interval_166700 chr9 62102026 62102391 + 0 NA intron (ENSMUSG00000032252.14, intron 1 of 4) protein_coding-intron (ENSMUSG00000032252.14, intron 1 of 2) 20386 ENSMUSG00000092696.1 ENSMUSG00000092696 ENSMUST00000174955 Mir5133 miRNA Interval_165043 chr9 44109540 44109800 + 0 NA promoter-TSS (ENSMUSG00000092258.2) sense_intronic-promoter-TSS (ENSMUSG00000092258.2) -791 ENSMUSG00000092258.2 ENSMUSG00000092258 ENSMUST00000174014 Gm20444 sense_intronic Interval_40764 chr12 108232954 108233235 + 0 NA intron (ENSMUSG00000084883.2, intron 1 of 5) protein_coding-intron (ENSMUSG00000084883.2, intron 1 of 6) 34009 ENSMUSG00000021258.10 ENSMUSG00000021258 ENSMUST00000223363 Ccnk protein_coding Interval_171644 chr9 119913271 119914077 + 0 NA promoter-TSS (ENSMUSG00000032512.7) protein_coding-promoter-TSS (ENSMUSG00000032512.7) 36 ENSMUSG00000032512.7 ENSMUSG00000032512 ENSMUST00000217492 Wdr48 protein_coding Interval_147229 chr7 64839317 64840568 + 0 NA intron (ENSMUSG00000030518.17, intron 2 of 3) protein_coding-intron (ENSMUSG00000030518.17, intron 3 of 9) 33055 ENSMUSG00000070520.4 ENSMUSG00000070520 ENSMUST00000094331 Nsmce3 protein_coding Interval_27692 chr11 69503684 69504401 + 0 NA intron (ENSMUSG00000005237.14, intron 12 of 85) protein_coding-intron (ENSMUSG00000005237.14, intron 11 of 84) 1393 ENSMUSG00000098432.1 ENSMUSG00000098432 ENSMUST00000184128 Gm27493 miRNA Interval_7806 chr1 133831599 133832112 + 0 NA TTS (ENSMUSG00000103166.1) TEC-TTS (ENSMUSG00000103166.1) 2327 ENSMUSG00000103166.1 ENSMUSG00000103166 ENSMUST00000192625 Gm10537 TEC Interval_131312 chr5 136342457 136343076 + 0 NA intron (ENSMUSG00000029705.17, intron 8 of 20) protein_coding-intron (ENSMUSG00000029705.17, intron 8 of 23) 7465 ENSMUSG00000102415.1 ENSMUSG00000102415 ENSMUST00000195666 A430110C17Rik TEC Interval_143416 chr7 6562600 6562961 + 0 NA Intergenic Intergenic -2061 ENSMUSG00000056696.5 ENSMUSG00000056696 ENSMUST00000070985 Olfr1350 protein_coding Interval_98670 chr2 154152162 154152499 + 0 NA Intergenic Intergenic 9431 ENSMUSG00000027483.7 ENSMUSG00000027483 ENSMUST00000140006 Bpifa1 protein_coding Interval_79805 chr18 35206404 35206639 + 0 NA intron (ENSMUSG00000037815.7, intron 5 of 15) protein_coding-intron (ENSMUSG00000037815.7, intron 7 of 17) 8503 ENSMUSG00000071862.3 ENSMUSG00000071862 ENSMUST00000236680 Lrrtm2 protein_coding Interval_57841 chr15 22935760 22936958 + 0 NA intron (ENSMUSG00000091194.1, intron 1 of 1) protein_coding-intron (ENSMUSG00000040420.15, intron 1 of 6) 872 ENSMUSG00000091194.1 ENSMUSG00000091194 ENSMUST00000169624 Gm19840 processed_pseudogene Interval_144299 chr7 24369744 24370615 + 0 NA promoter-TSS (ENSMUSG00000054342.8) protein_coding-promoter-TSS (ENSMUSG00000054342.8) -12875 ENSMUSG00000054342.8 ENSMUSG00000054342 ENSMUST00000206910 Kcnn4 protein_coding Interval_138115 chr6 85275601 85275789 + 0 NA intron (ENSMUSG00000033720.12, intron 6 of 7) protein_coding-intron (ENSMUSG00000033720.12, intron 6 of 13) 57727 ENSMUSG00000033720.12 ENSMUSG00000033720 ENSMUST00000203035 Sfxn5 protein_coding Interval_67708 chr16 56124543 56125401 + 0 NA intron (ENSMUSG00000052917.15, intron 5 of 5) protein_coding-intron (ENSMUSG00000052917.15, intron 6 of 6) 24590 ENSMUSG00000116826.1 ENSMUSG00000116826 ENSMUST00000231653 Gm49682 processed_pseudogene Interval_103756 chr3 52383395 52383982 + 0 NA Intergenic Intergenic -41720 ENSMUSG00000103454.1 ENSMUSG00000103454 ENSMUST00000194115 Gm38098 processed_pseudogene Interval_165579 chr9 49816115 49817137 + 0 NA Intergenic Intergenic 9349 ENSMUSG00000094255.1 ENSMUSG00000094255 ENSMUST00000178565 Gm25633 snRNA Interval_21039 chr10 124884995 124885287 + 0 NA Intergenic Intergenic -27649 ENSMUSG00000112542.1 ENSMUSG00000112542 ENSMUST00000217790 Gm47840 TEC Interval_142394 chr6 141479789 141479973 + 0 NA intron (ENSMUSG00000041741.10, intron 8 of 15) protein_coding-intron (ENSMUSG00000041741.10, intron 8 of 15) 37521 ENSMUSG00000108169.1 ENSMUSG00000108169 ENSMUST00000204360 Gm43958 TEC Interval_42105 chr13 8828738 8829362 + 0 NA intron (ENSMUSG00000021147.17, intron 3 of 5) protein_coding-intron (ENSMUSG00000021147.17, intron 11 of 13) 5322 ENSMUSG00000114094.1 ENSMUSG00000114094 ENSMUST00000220930 Gm48375 TEC Interval_43634 chr13 34248391 34249888 + 0 NA intron (ENSMUSG00000038267.15, intron 3 of 9) protein_coding-intron (ENSMUSG00000038267.15, intron 3 of 10) 28113 ENSMUSG00000088573.1 ENSMUSG00000088573 ENSMUST00000157948 Gm24530 misc_RNA Interval_158078 chr8 78583711 78585435 + 0 NA intron (ENSMUSG00000031684.11, intron 5 of 10) protein_coding-intron (ENSMUSG00000031684.11, intron 5 of 11) -19721 ENSMUSG00000110244.1 ENSMUSG00000110244 ENSMUST00000211775 Gm2253 processed_pseudogene Interval_137217 chr6 70155540 70156140 + 0 NA Intergenic Intergenic -7795 ENSMUSG00000096560.1 ENSMUSG00000096560 ENSMUST00000103905 Gm24096 miRNA Interval_130297 chr5 125495040 125495316 + 0 NA intron (ENSMUSG00000029482.4, intron 5 of 17) protein_coding-intron (ENSMUSG00000029482.4, intron 5 of 17) 15801 ENSMUSG00000098350.1 ENSMUSG00000098350 ENSMUST00000184258 Gm27551 miRNA Interval_74819 chr17 56723644 56724202 + 0 NA Intergenic Intergenic -5901 ENSMUSG00000054723.6 ENSMUSG00000054723 ENSMUST00000233208 Vmac protein_coding Interval_51706 chr14 31529184 31530136 + 0 NA intron (ENSMUSG00000057606.14, intron 12 of 16) protein_coding-intron (ENSMUSG00000057606.14, intron 12 of 16) 7598 ENSMUSG00000089241.1 ENSMUSG00000089241 ENSMUST00000158616 Gm24057 misc_RNA Interval_138289 chr6 86939778 86940004 + 0 NA intron (ENSMUSG00000057230.14, intron 4 of 8) protein_coding-intron (ENSMUSG00000057230.14, intron 4 of 19) -21750 ENSMUSG00000107576.1 ENSMUSG00000107576 ENSMUST00000204381 Gm44093 TEC Interval_173236 chrX 74968875 74969359 + 0 NA promoter-TSS (ENSMUSG00000032750.13) protein_coding-promoter-TSS (ENSMUSG00000032750.13) 10586 ENSMUSG00000083981.4 ENSMUSG00000083981 ENSMUST00000118897 Gm15363 unprocessed_pseudogene Interval_145298 chr7 31253182 31253563 + 0 NA Intergenic Intergenic 2905 ENSMUSG00000099357.1 ENSMUSG00000099357 ENSMUST00000189264 Scgb1b1-ps unprocessed_pseudogene Interval_140289 chr6 116185248 116185491 + 0 NA intron (ENSMUSG00000030126.17, intron 1 of 5) protein_coding-intron (ENSMUSG00000030126.17, intron 1 of 5) 10489 ENSMUSG00000082474.3 ENSMUSG00000082474 ENSMUST00000118191 Gm8213 processed_pseudogene Interval_74857 chr17 56906267 56906680 + 0 NA promoter-TSS (ENSMUSG00000024212.9) protein_coding-promoter-TSS (ENSMUSG00000024212.9) -727 ENSMUSG00000024212.9 ENSMUSG00000024212 ENSMUST00000233063 Mllt1 protein_coding Interval_116069 chr4 107382577 107383180 + 0 NA intron (ENSMUSG00000028614.14, intron 2 of 4) protein_coding-intron (ENSMUSG00000028614.14, intron 6 of 16) 1793 ENSMUSG00000028614.14 ENSMUSG00000028614 ENSMUST00000132950 Ndc1 protein_coding Interval_61092 chr15 79192710 79193787 + 0 NA intron (ENSMUSG00000075555.12, intron 1 of 2) processed_transcript-intron (ENSMUSG00000075555.12, intron 1 of 4) 20528 ENSMUSG00000075555.12 ENSMUSG00000075555 ENSMUST00000148028 Gm10863 processed_transcript Interval_161988 chr8 124277899 124278345 + 0 NA intron (ENSMUSG00000089704.9, intron 1 of 4) protein_coding-intron (ENSMUSG00000089704.9, intron 1 of 15) -17244 ENSMUSG00000089704.9 ENSMUSG00000089704 ENSMUST00000147911 Galnt2 protein_coding Interval_49843 chr13 117024151 117026039 + 0 NA intron (ENSMUSG00000021725.9, intron 1 of 24) protein_coding-intron (ENSMUSG00000021725.9, intron 2 of 26) 178 ENSMUSG00000021725.9 ENSMUSG00000021725 ENSMUST00000223833 Parp8 protein_coding Interval_174155 chrX 136789083 136790231 + 0 NA intron (ENSMUSG00000087368.7, intron 2 of 2) processed_transcript-intron (ENSMUSG00000087368.7, intron 9 of 9) -9516 ENSMUSG00000018595.6 ENSMUSG00000018595 ENSMUST00000154833 Glra4 protein_coding Interval_107268 chr3 105090731 105091577 + 0 NA Intergenic Intergenic 24310 ENSMUSG00000051788.4 ENSMUSG00000051788 ENSMUST00000070584 4930564D02Rik protein_coding Interval_32517 chr11 108053311 108053746 + 0 NA intron (ENSMUSG00000050965.14, intron 5 of 16) protein_coding-intron (ENSMUSG00000050965.14, intron 5 of 16) -40723 ENSMUSG00000050965.14 ENSMUSG00000050965 ENSMUST00000134725 Prkca protein_coding Interval_144864 chr7 28665121 28666371 + 0 NA intron (ENSMUSG00000108905.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000108905.1, intron 1 of 1) 23359 ENSMUSG00000108865.1 ENSMUSG00000108865 ENSMUST00000209122 Gm44617 processed_transcript Interval_165546 chr9 49230231 49230483 + 0 NA Intergenic Intergenic -20174 ENSMUSG00000054156.8 ENSMUSG00000054156 ENSMUST00000067007 Gm4894 protein_coding Interval_24784 chr11 37579587 37579790 + 0 NA Intergenic Intergenic -79301 ENSMUSG00000087388.1 ENSMUSG00000087388 ENSMUST00000131013 Gm12128 lincRNA Interval_14114 chr10 27645380 27646345 + 0 NA TTS (ENSMUSG00000112610.1) lincRNA-TTS (ENSMUSG00000112610.1) -30534 ENSMUSG00000103931.1 ENSMUSG00000103931 ENSMUST00000192114 Gm36962 TEC Interval_72054 chr17 27740677 27741308 + 0 NA intron (ENSMUSG00000086485.2, intron 2 of 2) lincRNA-intron (ENSMUSG00000086485.2, intron 2 of 2) 5772 ENSMUSG00000086485.2 ENSMUSG00000086485 ENSMUST00000156950 Gm15458 lincRNA Interval_5116 chr1 85784004 85784466 + 0 NA promoter-TSS (ENSMUSG00000092932.2) misc_RNA-promoter-TSS (ENSMUSG00000092932.2) -478 ENSMUSG00000092932.2 ENSMUSG00000092932 ENSMUST00000175191 Gm22906 misc_RNA Interval_45961 chr13 59668338 59669217 + 0 NA intron (ENSMUSG00000021556.12, intron 1 of 5) protein_coding-intron (ENSMUSG00000021556.12, intron 1 of 9) 6995 ENSMUSG00000021556.12 ENSMUSG00000021556 ENSMUST00000224160 Golm1 protein_coding Interval_74893 chr17 57105186 57106484 + 0 NA promoter-TSS (ENSMUSG00000079414.3) lincRNA-promoter-TSS (ENSMUSG00000079414.3) -302 ENSMUSG00000079414.3 ENSMUSG00000079414 ENSMUST00000233806 Gm11110 lincRNA Interval_120185 chr4 143769714 143770113 + 0 NA Intergenic Intergenic -19452 ENSMUSG00000066031.13 ENSMUSG00000066031 ENSMUST00000105770 Gm13023 protein_coding Interval_155224 chr8 28031865 28032881 + 0 NA Intergenic Intergenic 51893 ENSMUSG00000110343.1 ENSMUSG00000110343 ENSMUST00000210185 Gm45751 TEC Interval_146031 chr7 43328037 43328716 + 0 NA Intergenic Intergenic -15082 ENSMUSG00000012640.16 ENSMUSG00000012640 ENSMUST00000135130 Zfp715 protein_coding Interval_109253 chr3 138367362 138367663 + 0 NA Intergenic Intergenic -6678 ENSMUSG00000090306.5 ENSMUSG00000090306 ENSMUST00000196293 Adh6-ps1 transcribed_unprocessed_pseudogene Interval_144091 chr7 19386948 19388175 + 0 NA promoter-TSS (ENSMUSG00000030400.17) protein_coding-promoter-TSS (ENSMUSG00000030400.17) 918 ENSMUSG00000076315.2 ENSMUSG00000076315 ENSMUST00000102360 Mir343 miRNA Interval_164817 chr9 42178740 42179554 + 0 NA intron (ENSMUSG00000111767.1, intron 4 of 4) lincRNA-intron (ENSMUSG00000111767.1, intron 4 of 4) 30066 ENSMUSG00000111767.1 ENSMUSG00000111767 ENSMUST00000216643 4930546K05Rik lincRNA Interval_83448 chr18 85628334 85628655 + 0 NA Intergenic Intergenic 88231 ENSMUSG00000117854.1 ENSMUSG00000117854 ENSMUST00000237113 Gm7612 processed_pseudogene Interval_64927 chr16 17270872 17271538 + 0 NA intron (ENSMUSG00000116743.1, intron 2 of 3) processed_transcript-intron (ENSMUSG00000116743.1, intron 2 of 3) -5890 ENSMUSG00000055692.21 ENSMUSG00000055692 ENSMUST00000231334 Tmem191c protein_coding Interval_108324 chr3 123817475 123817968 + 0 NA Intergenic Intergenic 56394 ENSMUSG00000080842.2 ENSMUSG00000080842 ENSMUST00000118944 Gm15400 processed_pseudogene Interval_5108 chr1 85709386 85709602 + 0 NA TTS (ENSMUSG00000026222.16) protein_coding-TTS (ENSMUSG00000026222.16) 27087 ENSMUSG00000052760.16 ENSMUSG00000052760 ENSMUST00000159325 A630001G21Rik protein_coding Interval_107337 chr3 105958553 105960921 + 0 NA promoter-TSS (ENSMUSG00000000563.17) protein_coding-promoter-TSS (ENSMUSG00000000563.17) 234 ENSMUSG00000105852.4 ENSMUSG00000105852 ENSMUST00000137168 Gm42890 processed_transcript Interval_39367 chr12 86931036 86933393 + 0 NA Intergenic Intergenic -20443 ENSMUSG00000034157.12 ENSMUSG00000034157 ENSMUST00000191463 Cipc protein_coding Interval_128037 chr5 110435911 110436471 + 0 NA intron (ENSMUSG00000043323.17, intron 1 of 2) protein_coding-intron (ENSMUSG00000043323.17, intron 1 of 18) -11798 ENSMUSG00000105482.1 ENSMUSG00000105482 ENSMUST00000196305 Gm42596 antisense Interval_85942 chr19 33670879 33671056 + 0 NA intron (ENSMUSG00000024766.15, intron 1 of 10) protein_coding-intron (ENSMUSG00000024766.15, intron 1 of 10) -2504 ENSMUSG00000118360.1 ENSMUSG00000118360 ENSMUST00000237953 Gm19755 processed_pseudogene Interval_115303 chr4 95604559 95605076 + 0 NA intron (ENSMUSG00000028573.18, intron 3 of 12) protein_coding-intron (ENSMUSG00000028573.18, intron 3 of 12) -42658 ENSMUSG00000093492.1 ENSMUSG00000093492 ENSMUST00000177219 Gm20651 processed_pseudogene Interval_136480 chr6 54838415 54838757 + 0 NA intron (ENSMUSG00000058446.14, intron 1 of 3) protein_coding-intron (ENSMUSG00000058446.14, intron 1 of 4) 21316 ENSMUSG00000058446.14 ENSMUSG00000058446 ENSMUST00000127331 Znrf2 protein_coding Interval_162382 chr8 127648228 127648711 + 0 NA Intergenic Intergenic 50763 ENSMUSG00000088580.1 ENSMUSG00000088580 ENSMUST00000157955 Gm22968 rRNA Interval_122452 chr5 22943467 22943696 + 0 NA intron (ENSMUSG00000106379.1, intron 1 of 3) protein_coding-intron (ENSMUSG00000106379.1, intron 1 of 3) -11568 ENSMUSG00000060879.3 ENSMUSG00000060879 ENSMUST00000075377 Gm6564 processed_pseudogene Interval_98023 chr2 146838706 146839579 + 0 NA intron (ENSMUSG00000087618.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000087618.1, intron 1 of 1) 590 ENSMUSG00000087618.1 ENSMUSG00000087618 ENSMUST00000139345 Gm14114 lincRNA Interval_99340 chr2 159443317 159443864 + 0 NA Intergenic Intergenic 12867 ENSMUSG00000083913.1 ENSMUSG00000083913 ENSMUST00000120414 Gm14219 processed_pseudogene Interval_63040 chr15 98780236 98781082 + 0 NA Intergenic Intergenic -3630 ENSMUSG00000022996.15 ENSMUSG00000022996 ENSMUST00000226846 Wnt10b protein_coding Interval_35648 chr12 26598384 26598704 + 0 NA intron (ENSMUSG00000113524.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000113628.1, intron 1 of 1) 1285 ENSMUSG00000113524.1 ENSMUSG00000113524 ENSMUST00000223018 Gm47847 lincRNA Interval_109383 chr3 141199146 141199339 + 0 NA Intergenic Intergenic 13113 ENSMUSG00000047674.2 ENSMUSG00000047674 ENSMUST00000057860 Pdha2 protein_coding Interval_104082 chr3 58448171 58448642 + 0 NA intron (ENSMUSG00000027806.9, intron 3 of 4) protein_coding-intron (ENSMUSG00000027806.9, intron 2 of 3) 32528 ENSMUSG00000027806.9 ENSMUSG00000027806 ENSMUST00000196049 Tsc22d2 protein_coding Interval_51361 chr14 27005978 27007829 + 0 NA Intergenic Intergenic 12487 ENSMUSG00000040726.10 ENSMUSG00000040726 ENSMUST00000035433 Hesx1 protein_coding Interval_137323 chr6 71333511 71333820 + 0 NA intron (ENSMUSG00000053044.8, intron 4 of 5) protein_coding-intron (ENSMUSG00000053044.8, intron 4 of 5) 5870 ENSMUSG00000107855.1 ENSMUSG00000107855 ENSMUST00000203871 Gm44110 lincRNA Interval_50595 chr14 16324818 16325131 + 0 NA Intergenic Intergenic 20463 ENSMUSG00000114253.1 ENSMUSG00000114253 ENSMUST00000224494 Gm47798 sense_intronic Interval_52290 chr14 43967086 43968578 + 0 NA Intergenic Intergenic 1686 ENSMUSG00000089754.1 ENSMUSG00000089754 ENSMUST00000161287 Ear-ps7 unprocessed_pseudogene Interval_36638 chr12 51690946 51692502 + 0 NA exon (ENSMUSG00000020954.16, exon 1 of 18) protein_coding-exon (ENSMUSG00000020954.16, exon 1 of 18) 691 ENSMUSG00000020955.9 ENSMUSG00000020955 ENSMUST00000021338 Ap4s1 protein_coding Interval_15556 chr10 51349129 51349419 + 0 NA Intergenic Intergenic -106706 ENSMUSG00000112212.1 ENSMUSG00000112212 ENSMUST00000219395 Gm46189 lincRNA Interval_48997 chr13 106803545 106804605 + 0 NA intron (ENSMUSG00000042590.17, intron 5 of 5) protein_coding-intron (ENSMUSG00000042590.17, intron 29 of 29) 16005 ENSMUSG00000101308.1 ENSMUSG00000101308 ENSMUST00000187867 Gm28989 antisense Interval_142051 chr6 136795740 136796273 + 0 NA Intergenic Intergenic 8409 ENSMUSG00000096010.2 ENSMUSG00000096010 ENSMUST00000179285 H4f16 protein_coding Interval_140964 chr6 123248984 123249329 + 0 NA Intergenic Intergenic -12955 ENSMUSG00000030144.4 ENSMUSG00000030144 ENSMUST00000203421 Clec4d protein_coding Interval_57341 chr15 8978667 8978884 + 0 NA intron (ENSMUSG00000048424.17, intron 1 of 4) protein_coding-intron (ENSMUSG00000048424.17, intron 1 of 15) 10826 ENSMUSG00000048424.17 ENSMUSG00000048424 ENSMUST00000227191 Ranbp3l protein_coding Interval_57908 chr15 25314448 25316069 + 0 NA intron (ENSMUSG00000115355.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000115355.1, intron 1 of 4) 17390 ENSMUSG00000115355.1 ENSMUSG00000115355 ENSMUST00000228450 4930445E18Rik lincRNA Interval_123753 chr5 35206517 35206759 + 0 NA Intergenic Intergenic -71681 ENSMUSG00000045318.6 ENSMUSG00000045318 ENSMUST00000049545 Adra2c protein_coding Interval_137464 chr6 72616156 72617303 + 0 NA TTS (ENSMUSG00000092386.1) processed_transcript-TTS (ENSMUSG00000092386.1) 271 ENSMUSG00000056429.4 ENSMUSG00000056429 ENSMUST00000070524 Tgoln1 protein_coding Interval_14742 chr10 39527030 39527293 + 0 NA intron (ENSMUSG00000019843.14, intron 5 of 9) protein_coding-intron (ENSMUSG00000019843.14, intron 8 of 13) 30901 ENSMUSG00000087014.1 ENSMUSG00000087014 ENSMUST00000153722 Gm16364 antisense Interval_132465 chr5 145125320 145125751 + 0 NA promoter-TSS (ENSMUSG00000029622.16) protein_coding-promoter-TSS (ENSMUSG00000029622.16) 10091 ENSMUSG00000029623.14 ENSMUSG00000029623 ENSMUST00000148781 Pdap1 protein_coding Interval_7802 chr1 133793564 133793842 + 0 NA intron (ENSMUSG00000026463.17, intron 1 of 2) protein_coding-intron (ENSMUSG00000026463.17, intron 1 of 2) -15282 ENSMUSG00000102509.1 ENSMUSG00000102509 ENSMUST00000193173 Gm37368 TEC Interval_145664 chr7 37011217 37011429 + 0 NA Intergenic Intergenic 117369 ENSMUSG00000101342.1 ENSMUSG00000101342 ENSMUST00000190381 Gm28078 lincRNA Interval_147592 chr7 68735676 68736236 + 0 NA Intergenic Intergenic -9489 ENSMUSG00000108876.1 ENSMUSG00000108876 ENSMUST00000207441 Gm44692 lincRNA Interval_139285 chr6 97869651 97870012 + 0 NA intron (ENSMUSG00000035158.15, intron 1 of 9) protein_coding-intron (ENSMUSG00000035158.15, intron 1 of 9) 20708 ENSMUSG00000083086.1 ENSMUSG00000083086 ENSMUST00000118062 Gm15531 processed_pseudogene Interval_138438 chr6 88203826 88205085 + 0 NA promoter-TSS (ENSMUSG00000015053.14) protein_coding-promoter-TSS (ENSMUSG00000015053.14) 3536 ENSMUSG00000015053.14 ENSMUSG00000015053 ENSMUST00000203579 Gata2 protein_coding Interval_85798 chr19 31751892 31752167 + 0 NA intron (ENSMUSG00000052920.16, intron 1 of 2) protein_coding-intron (ENSMUSG00000052920.16, intron 1 of 17) -116752 ENSMUSG00000052595.8 ENSMUSG00000052595 ENSMUST00000225165 A1cf protein_coding Interval_173617 chrX 101076934 101077543 + 0 NA Intergenic Intergenic 5221 ENSMUSG00000031297.14 ENSMUSG00000031297 ENSMUST00000151922 Slc7a3 protein_coding Interval_134019 chr6 17748918 17749800 + 0 NA promoter-TSS (ENSMUSG00000029534.17) protein_coding-promoter-TSS (ENSMUSG00000029534.17) -459 ENSMUSG00000106801.1 ENSMUSG00000106801 ENSMUST00000202649 Gm42852 TEC Interval_132049 chr5 142487388 142488301 + 0 NA promoter-TSS (ENSMUSG00000029576.17) protein_coding-promoter-TSS (ENSMUSG00000029576.17) -275 ENSMUSG00000029576.17 ENSMUSG00000029576 ENSMUST00000129212 Radil protein_coding Interval_82097 chr18 67701725 67702095 + 0 NA intron (ENSMUSG00000024539.17, intron 2 of 8) protein_coding-intron (ENSMUSG00000024539.17, intron 2 of 9) -11686 ENSMUSG00000024539.17 ENSMUSG00000024539 ENSMUST00000128169 Ptpn2 protein_coding Interval_121463 chr4 155977154 155978299 + 0 NA Intergenic Intergenic 13165 ENSMUSG00000023571.4 ENSMUSG00000023571 ENSMUST00000127222 C1qtnf12 protein_coding Interval_156679 chr8 56951536 56951836 + 0 NA Intergenic Intergenic -1143 ENSMUSG00000110043.1 ENSMUSG00000110043 ENSMUST00000211123 Gm7328 processed_pseudogene Interval_156912 chr8 61623643 61623941 + 0 NA intron (ENSMUSG00000058056.16, intron 10 of 21) protein_coding-intron (ENSMUSG00000058056.16, intron 10 of 19) -107892 ENSMUSG00000058056.16 ENSMUSG00000058056 ENSMUST00000123523 Palld protein_coding Interval_122620 chr5 24261038 24262439 + 0 NA Intergenic Intergenic 4916 ENSMUSG00000081071.1 ENSMUSG00000081071 ENSMUST00000117132 Gm9836 processed_pseudogene Interval_139203 chr6 97157527 97158394 + 0 NA intron (ENSMUSG00000030059.15, intron 14 of 15) protein_coding-intron (ENSMUSG00000030059.15, intron 15 of 16) 4987 ENSMUSG00000065728.1 ENSMUSG00000065728 ENSMUST00000083794 Gm26175 snoRNA Interval_46700 chr13 69485513 69485816 + 0 NA Intergenic Intergenic -28336 ENSMUSG00000113486.1 ENSMUSG00000113486 ENSMUST00000221578 Gm48676 processed_pseudogene Interval_143553 chr7 12731500 12731788 + 0 NA intron (ENSMUSG00000090762.2, intron 2 of 6) protein_coding-intron (ENSMUSG00000090762.2, intron 1 of 5) 3360 ENSMUSG00000090762.2 ENSMUSG00000090762 ENSMUST00000163852 Vmn2r56 protein_coding Interval_67718 chr16 56239582 56239926 + 0 NA intron (ENSMUSG00000035270.15, intron 9 of 18) protein_coding-intron (ENSMUSG00000035270.15, intron 9 of 19) 35441 ENSMUSG00000035270.15 ENSMUSG00000035270 ENSMUST00000159842 Impg2 protein_coding Interval_49100 chr13 108022582 108023299 + 0 NA intron (ENSMUSG00000068184.7, intron 2 of 3) protein_coding-intron (ENSMUSG00000068184.7, intron 2 of 3) -21546 ENSMUSG00000071180.5 ENSMUSG00000071180 ENSMUST00000224390 Smim15 protein_coding Interval_40583 chr12 105840314 105841537 + 0 NA Intergenic Intergenic 11858 ENSMUSG00000021111.15 ENSMUSG00000021111 ENSMUST00000172089 Papola protein_coding Interval_10998 chr1 177928126 177929162 + 0 NA intron (ENSMUSG00000102483.2, intron 14 of 21) protein_coding-intron (ENSMUSG00000102483.2, intron 14 of 21) -62792 ENSMUSG00000091476.8 ENSMUSG00000091476 ENSMUST00000239155 Catspere2 protein_coding Interval_21712 chr11 3865818 3866413 + 0 NA Intergenic Intergenic -6840 ENSMUSG00000084077.1 ENSMUSG00000084077 ENSMUST00000121172 Gm11952 processed_pseudogene Interval_25788 chr11 51718468 51718895 + 0 NA intron (ENSMUSG00000036391.16, intron 11 of 22) protein_coding-intron (ENSMUSG00000036391.16, intron 11 of 22) 19241 ENSMUSG00000084744.1 ENSMUSG00000084744 ENSMUST00000122795 Gm25291 snoRNA Interval_50840 chr14 20155877 20156255 + 0 NA intron (ENSMUSG00000023243.9, intron 1 of 4) protein_coding-intron (ENSMUSG00000023243.9, intron 1 of 4) -10772 ENSMUSG00000023243.9 ENSMUSG00000023243 ENSMUST00000225552 Kcnk5 protein_coding Interval_165615 chr9 50431436 50431719 + 0 NA Intergenic Intergenic -62950 ENSMUSG00000032068.14 ENSMUSG00000032068 ENSMUST00000188047 Plet1 protein_coding Interval_23985 chr11 29190421 29190713 + 0 NA intron (ENSMUSG00000020463.15, intron 4 of 11) protein_coding-intron (ENSMUSG00000020463.15, intron 4 of 15) 16820 ENSMUSG00000020463.15 ENSMUSG00000020463 ENSMUST00000148759 Ppp4r3b protein_coding Interval_160196 chr8 107072358 107074624 + 0 NA intron (ENSMUSG00000031921.17, intron 7 of 10) protein_coding-intron (ENSMUSG00000031921.17, intron 7 of 10) -7847 ENSMUSG00000031919.6 ENSMUSG00000031919 ENSMUST00000034393 Tmed6 protein_coding Interval_8273 chr1 136884037 136884412 + 0 NA intron (ENSMUSG00000026398.14, intron 7 of 8) protein_coding-intron (ENSMUSG00000026398.14, intron 7 of 8) 64949 ENSMUSG00000026398.14 ENSMUSG00000026398 ENSMUST00000195428 Nr5a2 protein_coding Interval_146247 chr7 44951703 44953358 + 0 NA intron (ENSMUSG00000059891.14, intron 5 of 10) protein_coding-intron (ENSMUSG00000059891.14, intron 5 of 10) -1784 ENSMUSG00000059891.14 ENSMUSG00000059891 ENSMUST00000208475 Tsks protein_coding Interval_56390 chr14 118374920 118376646 + 0 NA exon (ENSMUSG00000115515.1, exon 1 of 1) processed_pseudogene-exon (ENSMUSG00000115515.1, exon 1 of 1) 411 ENSMUSG00000115515.1 ENSMUSG00000115515 ENSMUST00000226188 Gm5672 processed_pseudogene Interval_9094 chr1 153556684 153557089 + 0 NA Intergenic Intergenic -7175 ENSMUSG00000042684.8 ENSMUSG00000042684 ENSMUST00000187747 Npl protein_coding Interval_154924 chr8 25098096 25098819 + 0 NA intron (ENSMUSG00000031557.16, intron 1 of 11) protein_coding-intron (ENSMUSG00000031557.16, intron 1 of 11) 3697 ENSMUSG00000031557.16 ENSMUSG00000031557 ENSMUST00000125466 Plekha2 protein_coding Interval_21618 chr11 3260900 3261179 + 0 NA intron (ENSMUSG00000020457.13, intron 2 of 3) protein_coding-intron (ENSMUSG00000020457.13, intron 3 of 8) 5353 ENSMUSG00000020457.13 ENSMUSG00000020457 ENSMUST00000132159 Drg1 protein_coding Interval_24422 chr11 33156496 33156932 + 0 NA exon (ENSMUSG00000057113.13, exon 8 of 11) protein_coding-exon (ENSMUSG00000057113.13, exon 8 of 11) 563 ENSMUSG00000057113.13 ENSMUSG00000057113 ENSMUST00000146759 Npm1 protein_coding Interval_153014 chr7 140868871 140869316 + 0 NA TTS (ENSMUSG00000025486.17) protein_coding-TTS (ENSMUSG00000025486.17) 11642 ENSMUSG00000025485.13 ENSMUSG00000025485 ENSMUST00000152212 Ric8a protein_coding Interval_135876 chr6 48104930 48105220 + 0 NA Intergenic Intergenic -22797 ENSMUSG00000057691.8 ENSMUSG00000057691 ENSMUST00000203994 Zfp746 protein_coding Interval_14482 chr10 34221885 34222821 + 0 NA Intergenic Intergenic -8275 ENSMUSG00000111876.1 ENSMUSG00000111876 ENSMUST00000216782 Gm18346 processed_pseudogene Interval_133807 chr6 12540469 12540701 + 0 NA intron (ENSMUSG00000032625.14, intron 2 of 27) protein_coding-intron (ENSMUSG00000032625.14, intron 1 of 5) -24933 ENSMUSG00000083794.1 ENSMUSG00000083794 ENSMUST00000118647 Gm16123 processed_pseudogene Interval_28462 chr11 76064542 76065118 + 0 NA intron (ENSMUSG00000017288.15, intron 18 of 18) protein_coding-intron (ENSMUSG00000017288.15, intron 18 of 21) -37048 ENSMUSG00000020846.6 ENSMUSG00000020846 ENSMUST00000021207 Rflnb protein_coding Interval_106855 chr3 101318084 101319048 + 0 NA Intergenic Intergenic 7720 ENSMUSG00000106316.1 ENSMUSG00000106316 ENSMUST00000197441 Gm43467 processed_pseudogene Interval_77694 chr17 94345028 94346005 + 0 NA Intergenic Intergenic -16653 ENSMUSG00000077433.1 ENSMUSG00000077433 ENSMUST00000104245 Gm22593 snRNA Interval_97109 chr2 131297417 131297990 + 0 NA promoter-TSS (ENSMUSG00000086329.1) processed_transcript-promoter-TSS (ENSMUSG00000086329.1) -842 ENSMUSG00000086329.1 ENSMUSG00000086329 ENSMUST00000149576 Gm14233 processed_transcript Interval_128139 chr5 111251587 111252621 + 0 NA intron (ENSMUSG00000033209.17, intron 12 of 22) protein_coding-intron (ENSMUSG00000033209.17, intron 13 of 23) 22990 ENSMUSG00000099130.1 ENSMUSG00000099130 ENSMUST00000183861 Gm27602 misc_RNA Interval_43375 chr13 29838547 29838873 + 0 NA intron (ENSMUSG00000006191.17, intron 4 of 5) protein_coding-intron (ENSMUSG00000006191.17, intron 4 of 15) -101573 ENSMUSG00000086893.1 ENSMUSG00000086893 ENSMUST00000144277 Gm11365 antisense Interval_148997 chr7 91110904 91111273 + 0 NA intron (ENSMUSG00000052572.19, intron 1 of 13) protein_coding-intron (ENSMUSG00000052572.19, intron 1 of 22) 12123 ENSMUSG00000098805.1 ENSMUSG00000098805 ENSMUST00000184070 Gm27470 misc_RNA Interval_9076 chr1 153450847 153451825 + 0 NA intron (ENSMUSG00000042708.12, intron 9 of 9) protein_coding-intron (ENSMUSG00000042708.12, intron 9 of 9) 5973 ENSMUSG00000042708.12 ENSMUSG00000042708 ENSMUST00000137861 Shcbp1l protein_coding Interval_130919 chr5 134052450 134052811 + 0 NA Intergenic Intergenic 38821 ENSMUSG00000106800.1 ENSMUSG00000106800 ENSMUST00000202497 1700030N18Rik TEC Interval_61180 chr15 79791672 79793053 + 0 NA intron (ENSMUSG00000022421.19, intron 3 of 4) protein_coding-intron (ENSMUSG00000022421.19, intron 3 of 4) 12347 ENSMUSG00000022421.19 ENSMUSG00000022421 ENSMUST00000125283 Nptxr protein_coding Interval_126808 chr5 93100642 93101895 + 0 NA intron (ENSMUSG00000058013.11, intron 1 of 9) protein_coding-intron (ENSMUSG00000058013.11, intron 1 of 9) 7732 ENSMUSG00000058013.11 ENSMUSG00000058013 ENSMUST00000201695 Septin11 protein_coding Interval_137670 chr6 78512932 78513282 + 0 NA Intergenic Intergenic -15666 ENSMUSG00000108073.1 ENSMUSG00000108073 ENSMUST00000203989 Gm6072 processed_pseudogene Interval_72522 chr17 30432457 30432672 + 0 NA intron (ENSMUSG00000062202.14, intron 6 of 6) protein_coding-intron (ENSMUSG00000062202.14, intron 6 of 11) -17834 ENSMUSG00000117835.1 ENSMUSG00000117835 ENSMUST00000237696 Gm50250 processed_transcript Interval_98284 chr2 150802437 150803481 + 0 NA intron (ENSMUSG00000033059.7, intron 2 of 6) protein_coding-intron (ENSMUSG00000033059.7, intron 2 of 19) -12363 ENSMUSG00000033059.7 ENSMUSG00000033059 ENSMUST00000135717 Pygb protein_coding Interval_106195 chr3 94490139 94490406 + 0 NA TTS (ENSMUSG00000028137.9) protein_coding-TTS (ENSMUSG00000028137.9) 11778 ENSMUSG00000028137.9 ENSMUSG00000028137 ENSMUST00000197033 Celf3 protein_coding Interval_116854 chr4 117705564 117705760 + 0 NA Intergenic Intergenic 5474 ENSMUSG00000086320.1 ENSMUSG00000086320 ENSMUST00000156081 Gm12840 lincRNA Interval_160393 chr8 108911146 108912061 + 0 NA intron (ENSMUSG00000038872.10, intron 10 of 15) protein_coding-intron (ENSMUSG00000038872.10, intron 4 of 9) 10271 ENSMUSG00000093697.1 ENSMUSG00000093697 ENSMUST00000175846 Gm20686 antisense Interval_47469 chr13 84912853 84913586 + 0 NA Intergenic Intergenic 61098 ENSMUSG00000114338.1 ENSMUSG00000114338 ENSMUST00000225386 Gm4059 processed_pseudogene Interval_2606 chr1 42034793 42035787 + 0 NA Intergenic Intergenic -67999 ENSMUSG00000100178.1 ENSMUSG00000100178 ENSMUST00000191574 Gm5267 processed_pseudogene Interval_36006 chr12 33243021 33243233 + 0 NA intron (ENSMUSG00000020564.17, intron 3 of 12) protein_coding-intron (ENSMUSG00000020564.17, intron 2 of 2) -14273 ENSMUSG00000079143.3 ENSMUSG00000079143 ENSMUST00000155877 Atxn7l1os1 antisense Interval_107620 chr3 108926277 108928408 + 0 NA Intergenic Intergenic -12717 ENSMUSG00000045662.17 ENSMUSG00000045662 ENSMUST00000196533 Henmt1 protein_coding Interval_45838 chr13 58469654 58470230 + 0 NA Intergenic Intergenic 26921 ENSMUSG00000114654.1 ENSMUSG00000114654 ENSMUST00000225848 Gm47918 lincRNA Interval_163165 chr9 16352903 16354412 + 0 NA intron (ENSMUSG00000074505.6, intron 2 of 25) protein_coding-intron (ENSMUSG00000074505.6, intron 1 of 24) 81738 ENSMUSG00000111652.1 ENSMUSG00000111652 ENSMUST00000215220 Gm48726 TEC Interval_128668 chr5 114616636 114617102 + 0 NA Intergenic Intergenic 28030 ENSMUSG00000014158.12 ENSMUSG00000014158 ENSMUST00000212469 Trpv4 protein_coding Interval_51109 chr14 23397158 23398290 + 0 NA intron (ENSMUSG00000063142.15, intron 18 of 27) protein_coding-intron (ENSMUSG00000063142.15, intron 17 of 28) 76580 ENSMUSG00000114803.1 ENSMUSG00000114803 ENSMUST00000225611 Gm46443 processed_pseudogene Interval_154383 chr8 15150015 15150518 + 0 NA intron (ENSMUSG00000110286.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000110286.1, intron 1 of 1) 9222 ENSMUSG00000110286.1 ENSMUSG00000110286 ENSMUST00000209946 Gm7706 lincRNA Interval_64277 chr16 10146351 10147983 + 0 NA Intergenic Intergenic -23059 ENSMUSG00000039209.12 ENSMUSG00000039209 ENSMUST00000044103 Rpl39l protein_coding Interval_95288 chr2 105687230 105688622 + 0 NA intron (ENSMUSG00000027168.21, intron 8 of 13) protein_coding-intron (ENSMUSG00000027168.21, intron 7 of 12) 12817 ENSMUSG00000027168.21 ENSMUSG00000027168 ENSMUST00000147946 Pax6 protein_coding Interval_128919 chr5 116097088 116097563 + 0 NA Intergenic Intergenic -14079 ENSMUSG00000079278.2 ENSMUSG00000079278 ENSMUST00000239438 Tmem233 protein_coding Interval_49552 chr13 112894370 112894803 + 0 NA intron (ENSMUSG00000016018.4, intron 16 of 26) protein_coding-intron (ENSMUSG00000016018.4, intron 16 of 26) 10360 ENSMUSG00000098067.1 ENSMUSG00000098067 ENSMUST00000182295 Gm26943 processed_pseudogene Interval_64746 chr16 14906391 14907101 + 0 NA promoter-TSS (ENSMUSG00000068617.5) protein_coding-promoter-TSS (ENSMUSG00000068617.5) 140 ENSMUSG00000068617.5 ENSMUSG00000068617 ENSMUST00000229121 Efcab1 protein_coding Interval_52376 chr14 45471354 45471761 + 0 NA intron (ENSMUSG00000037712.16, intron 4 of 4) protein_coding-intron (ENSMUSG00000037712.16, intron 7 of 14) -9912 ENSMUSG00000088769.1 ENSMUSG00000088769 ENSMUST00000158144 Gm22637 misc_RNA Interval_84958 chr19 20298632 20298827 + 0 NA Intergenic Intergenic 91944 ENSMUSG00000024659.15 ENSMUSG00000024659 ENSMUST00000164587 Anxa1 protein_coding Interval_50 GL456212.1 82640 82928 + 0 NA NA NA NA NA Interval_33804 chr11 118640896 118641213 + 0 NA intron (ENSMUSG00000025576.17, intron 3 of 14) protein_coding-intron (ENSMUSG00000025576.17, intron 3 of 14) -133701 ENSMUSG00000025576.17 ENSMUSG00000025576 ENSMUST00000134774 Rbfox3 protein_coding Interval_48914 chr13 104763555 104764172 + 0 NA intron (ENSMUSG00000021715.12, intron 1 of 1) protein_coding-intron (ENSMUSG00000021715.12, intron 10 of 13) 53279 ENSMUSG00000021715.12 ENSMUSG00000021715 ENSMUST00000154165 Cwc27 protein_coding Interval_124800 chr5 54198437 54198647 + 0 NA Intergenic Intergenic 82685 ENSMUSG00000039156.19 ENSMUSG00000039156 ENSMUST00000202342 Stim2 protein_coding Interval_37125 chr12 58646477 58646780 + 0 NA Intergenic Intergenic -117278 ENSMUSG00000112487.1 ENSMUSG00000112487 ENSMUST00000219517 Gm18873 processed_pseudogene Interval_174225 chrX 140399954 140400316 + 0 NA intron (ENSMUSG00000042425.18, intron 10 of 14) protein_coding-intron (ENSMUSG00000042425.18, intron 10 of 14) 46247 ENSMUSG00000082031.1 ENSMUSG00000082031 ENSMUST00000117903 Gm8097 processed_pseudogene Interval_161639 chr8 121736266 121736751 + 0 NA intron (ENSMUSG00000025318.13, intron 1 of 5) protein_coding-intron (ENSMUSG00000025318.13, intron 1 of 4) -16968 ENSMUSG00000025318.13 ENSMUSG00000025318 ENSMUST00000172209 Jph3 protein_coding Interval_51478 chr14 28004123 28004954 + 0 NA intron (ENSMUSG00000040640.11, intron 7 of 7) protein_coding-intron (ENSMUSG00000040640.11, intron 7 of 15) -128321 ENSMUSG00000109849.1 ENSMUSG00000109849 ENSMUST00000211470 Gm45645 antisense Interval_64882 chr16 16958557 16960023 + 0 NA Intergenic Intergenic -9319 ENSMUSG00000116598.1 ENSMUSG00000116598 ENSMUST00000232160 Gm6438 processed_pseudogene Interval_82240 chr18 69524481 69524817 + 0 NA TTS (ENSMUSG00000053477.17) protein_coding-TTS (ENSMUSG00000053477.17) 2199 ENSMUSG00000053477.17 ENSMUSG00000053477 ENSMUST00000136019 Tcf4 protein_coding Interval_115661 chr4 101787772 101788095 + 0 NA promoter-TSS (ENSMUSG00000057722.17) protein_coding-promoter-TSS (ENSMUSG00000057722.17) 16565 ENSMUSG00000057722.17 ENSMUSG00000057722 ENSMUST00000151733 Lepr protein_coding Interval_66032 chr16 31060321 31060908 + 0 NA intron (ENSMUSG00000047434.14, intron 1 of 3) protein_coding-intron (ENSMUSG00000047434.14, intron 1 of 3) 9212 ENSMUSG00000047434.14 ENSMUSG00000047434 ENSMUST00000142870 Xxylt1 protein_coding Interval_152532 chr7 133927751 133927986 + 0 NA intron (ENSMUSG00000054555.11, intron 4 of 12) protein_coding-intron (ENSMUSG00000054555.11, intron 14 of 22) 11873 ENSMUSG00000093032.1 ENSMUSG00000093032 ENSMUST00000175291 Gm23631 miRNA Interval_75413 chr17 66432318 66433484 + 0 NA intron (ENSMUSG00000052105.17, intron 3 of 15) protein_coding-intron (ENSMUSG00000052105.17, intron 3 of 13) 6131 ENSMUSG00000052105.17 ENSMUSG00000052105 ENSMUST00000127259 Mtcl1 protein_coding Interval_54027 chr14 64607297 64607885 + 0 NA Intergenic Intergenic 16406 ENSMUSG00000092972.1 ENSMUSG00000092972 ENSMUST00000175231 Mir3078 miRNA Interval_109365 chr3 140114929 140116541 + 0 NA TTS (ENSMUSG00000105180.1) processed_pseudogene-TTS (ENSMUSG00000105180.1) 2300 ENSMUSG00000105180.1 ENSMUSG00000105180 ENSMUST00000196907 Gm4863 processed_pseudogene Interval_32548 chr11 108447119 108447737 + 0 NA intron (ENSMUSG00000020728.17, intron 5 of 5) protein_coding-intron (ENSMUSG00000020728.17, intron 5 of 27) 24155 ENSMUSG00000082544.1 ENSMUSG00000082544 ENSMUST00000119828 Gm11667 processed_pseudogene Interval_112525 chr4 41850890 41851787 + 0 NA Intergenic Intergenic -42050 ENSMUSG00000084010.1 ENSMUSG00000084010 ENSMUST00000119405 Gm13302 unprocessed_pseudogene Interval_93162 chr2 70745087 70745339 + 0 NA TTS (ENSMUSG00000041997.16) protein_coding-TTS (ENSMUSG00000041997.16) -27309 ENSMUSG00000041997.16 ENSMUSG00000041997 ENSMUST00000124629 Tlk1 protein_coding Interval_105777 chr3 89270233 89271082 + 0 NA promoter-TSS (ENSMUSG00000027953.13) protein_coding-promoter-TSS (ENSMUSG00000027953.13) -178 ENSMUSG00000027953.13 ENSMUSG00000027953 ENSMUST00000130690 Slc50a1 protein_coding Interval_22328 chr11 8855386 8855710 + 0 NA intron (ENSMUSG00000046634.12, intron 35 of 42) protein_coding-intron (ENSMUSG00000046634.12, intron 42 of 49) 29748 ENSMUSG00000082095.1 ENSMUSG00000082095 ENSMUST00000119652 Gm11991 processed_pseudogene Interval_72098 chr17 28020152 28020924 + 0 NA intron (ENSMUSG00000024219.16, intron 11 of 23) protein_coding-intron (ENSMUSG00000024219.16, intron 12 of 24) -18176 ENSMUSG00000117263.1 ENSMUSG00000117263 ENSMUST00000233367 Gm35290 antisense Interval_21543 chr10 129593316 129594179 + 0 NA Intergenic Intergenic -10852 ENSMUSG00000076964.1 ENSMUSG00000076964 ENSMUST00000103776 Gm23252 miRNA Interval_35832 chr12 30922425 30923007 + 0 NA intron (ENSMUSG00000020669.15, intron 2 of 8) protein_coding-intron (ENSMUSG00000020669.15, intron 2 of 9) 11048 ENSMUSG00000020669.15 ENSMUSG00000020669 ENSMUST00000128814 Sh3yl1 protein_coding Interval_13879 chr10 24179707 24180317 + 0 NA exon (ENSMUSG00000019998.6, exon 5 of 10) protein_coding-exon (ENSMUSG00000019998.6, exon 5 of 10) 30685 ENSMUSG00000019998.6 ENSMUSG00000019998 ENSMUST00000219553 Stx7 protein_coding Interval_4523 chr1 74783694 74784725 + 0 NA exon (ENSMUSG00000033227.7, exon 4 of 4) protein_coding-exon (ENSMUSG00000033227.7, exon 4 of 4) 1770 ENSMUSG00000033227.7 ENSMUSG00000033227 ENSMUST00000189544 Wnt6 protein_coding Interval_112708 chr4 44278031 44278258 + 0 NA Intergenic Intergenic -25424 ENSMUSG00000035683.13 ENSMUSG00000035683 ENSMUST00000137759 Melk protein_coding Interval_7660 chr1 132893313 132894706 + 0 NA intron (ENSMUSG00000026443.3, intron 1 of 1) protein_coding-intron (ENSMUSG00000026443.3, intron 1 of 1) 13654 ENSMUSG00000026443.3 ENSMUSG00000026443 ENSMUST00000159088 Lrrn2 protein_coding Interval_11231 chr1 180343079 180343883 + 0 NA intron (ENSMUSG00000038855.10, intron 2 of 7) protein_coding-intron (ENSMUSG00000038855.10, intron 2 of 7) 9615 ENSMUSG00000038855.10 ENSMUSG00000038855 ENSMUST00000195043 Itpkb protein_coding Interval_70508 chr17 11230888 11231186 + 0 NA intron (ENSMUSG00000023826.16, intron 3 of 3) protein_coding-intron (ENSMUSG00000023826.16, intron 2 of 6) -18307 ENSMUSG00000103324.1 ENSMUSG00000103324 ENSMUST00000194525 Gm37402 TEC Interval_14470 chr10 34152386 34152705 + 0 NA exon (ENSMUSG00000039497.8, exon 6 of 6) protein_coding-exon (ENSMUSG00000039497.8, exon 6 of 6) 23700 ENSMUSG00000039497.8 ENSMUSG00000039497 ENSMUST00000216194 Dse protein_coding Interval_46232 chr13 62813346 62813534 + 0 NA TTS (ENSMUSG00000114117.1) lincRNA-TTS (ENSMUSG00000114117.1) 364 ENSMUSG00000113637.1 ENSMUSG00000113637 ENSMUST00000223520 Gm7049 processed_pseudogene Interval_45577 chr13 55996426 55997553 + 0 NA intron (ENSMUSG00000114493.2, intron 4 of 5) antisense-intron (ENSMUSG00000114493.2, intron 4 of 5) 33245 ENSMUSG00000114229.1 ENSMUSG00000114229 ENSMUST00000225745 Gm47072 processed_pseudogene Interval_112469 chr4 41424683 41424923 + 0 NA intron (ENSMUSG00000028438.16, intron 4 of 6) protein_coding-intron (ENSMUSG00000028438.16, intron 2 of 9) 40043 ENSMUSG00000028438.16 ENSMUSG00000028438 ENSMUST00000131532 Kif24 protein_coding Interval_128162 chr5 111396010 111396581 + 0 NA Intergenic Intergenic -8006 ENSMUSG00000104559.1 ENSMUSG00000104559 ENSMUST00000199149 Gm43118 antisense Interval_50509 chr14 14447633 14448094 + 0 NA exon (ENSMUSG00000114737.1, exon 1 of 1) processed_pseudogene-exon (ENSMUSG00000114737.1, exon 1 of 1) 1081 ENSMUSG00000114737.1 ENSMUSG00000114737 ENSMUST00000224271 Gm8483 processed_pseudogene Interval_135630 chr6 41890971 41891279 + 0 NA Intergenic Intergenic 27785 ENSMUSG00000014104.12 ENSMUSG00000014104 ENSMUST00000143093 Sval2 protein_coding Interval_90950 chr2 33659031 33659596 + 0 NA Intergenic Intergenic -6515 ENSMUSG00000081244.3 ENSMUSG00000081244 ENSMUST00000121118 Gm13529 processed_pseudogene Interval_3956 chr1 65066426 65066702 + 0 NA Intergenic Intergenic -3263 ENSMUSG00000067299.11 ENSMUSG00000067299 ENSMUST00000127762 Crygd protein_coding Interval_53493 chr14 57825583 57826974 + 0 NA promoter-TSS (ENSMUSG00000021965.3) protein_coding-promoter-TSS (ENSMUSG00000021965.3) -152 ENSMUSG00000021967.4 ENSMUSG00000021967 ENSMUST00000224313 Mrpl57 protein_coding Interval_66527 chr16 34828469 34828636 + 0 NA intron (ENSMUSG00000022836.11, intron 2 of 5) protein_coding-intron (ENSMUSG00000022836.11, intron 2 of 31) -76587 ENSMUSG00000022836.11 ENSMUSG00000022836 ENSMUST00000231589 Mylk protein_coding Interval_104778 chr3 72903894 72904181 + 0 NA intron (ENSMUSG00000027790.14, intron 43 of 47) protein_coding-intron (ENSMUSG00000027790.14, intron 42 of 46) 47672 ENSMUSG00000027790.14 ENSMUSG00000027790 ENSMUST00000170445 Sis protein_coding Interval_95119 chr2 104027105 104028447 + 0 NA promoter-TSS (ENSMUSG00000027180.12) protein_coding-promoter-TSS (ENSMUSG00000027180.12) -72 ENSMUSG00000027180.12 ENSMUSG00000027180 ENSMUST00000102565 Fbxo3 protein_coding Interval_52395 chr14 45574165 45574578 + 0 NA intron (ENSMUSG00000115553.1, intron 1 of 1) antisense-intron (ENSMUSG00000085913.2, intron 1 of 2) 8840 ENSMUSG00000115553.1 ENSMUSG00000115553 ENSMUST00000228948 Gm49124 lincRNA Interval_59734 chr15 58958735 58959034 + 0 NA intron (ENSMUSG00000022353.10, intron 4 of 7) protein_coding-intron (ENSMUSG00000022353.10, intron 7 of 14) 25076 ENSMUSG00000022354.4 ENSMUSG00000022354 ENSMUST00000228595 Ndufb9 protein_coding Interval_77435 chr17 88698747 88699791 + 0 NA intron (ENSMUSG00000024154.11, intron 6 of 8) protein_coding-intron (ENSMUSG00000024154.11, intron 6 of 8) 30592 ENSMUSG00000024154.11 ENSMUSG00000024154 ENSMUST00000161481 Gtf2a1l protein_coding Interval_113130 chr4 48542861 48543761 + 0 NA intron (ENSMUSG00000039693.11, intron 1 of 2) protein_coding-intron (ENSMUSG00000039693.11, intron 1 of 2) 2765 ENSMUSG00000039693.11 ENSMUSG00000039693 ENSMUST00000132360 Msantd3 protein_coding Interval_26859 chr11 61146476 61147794 + 0 NA TTS (ENSMUSG00000010142.12) protein_coding-TTS (ENSMUSG00000010142.12) -15828 ENSMUSG00000080912.1 ENSMUSG00000080912 ENSMUST00000122273 Gm12269 processed_pseudogene Interval_34920 chr12 13461742 13462469 + 0 NA intron (ENSMUSG00000020576.10, intron 40 of 51) protein_coding-intron (ENSMUSG00000020576.10, intron 40 of 51) -6135 ENSMUSG00000071414.5 ENSMUSG00000071414 ENSMUST00000166583 Gm6736 processed_pseudogene Interval_81551 chr18 61639483 61640543 + 0 NA intron (ENSMUSG00000098098.7, intron 1 of 2) lincRNA-intron (ENSMUSG00000098098.7, intron 1 of 2) 360 ENSMUSG00000098098.7 ENSMUSG00000098098 ENSMUST00000183087 Bvht lincRNA Interval_24548 chr11 34285414 34286253 + 0 NA intron (ENSMUSG00000020143.15, intron 32 of 34) protein_coding-intron (ENSMUSG00000020143.15, intron 32 of 51) -13874 ENSMUSG00000087122.1 ENSMUSG00000087122 ENSMUST00000147359 4930403D09Rik antisense Interval_44408 chr13 44676225 44676525 + 0 NA Intergenic Intergenic 54193 ENSMUSG00000113730.1 ENSMUSG00000113730 ENSMUST00000221956 Gm47805 lincRNA Interval_96507 chr2 125159026 125159296 + 0 NA intron (ENSMUSG00000027202.12, intron 2 of 4) protein_coding-intron (ENSMUSG00000027202.12, intron 2 of 26) 6581 ENSMUSG00000027202.12 ENSMUSG00000027202 ENSMUST00000028630 Slc12a1 protein_coding Interval_37088 chr12 57622267 57622515 + 0 NA TTS (ENSMUSG00000046782.14) protein_coding-TTS (ENSMUSG00000046782.14) -3789 ENSMUSG00000085851.1 ENSMUSG00000085851 ENSMUST00000143949 4921518K17Rik antisense Interval_38929 chr12 83884047 83884714 + 0 NA intron (ENSMUSG00000021224.15, intron 1 of 8) protein_coding-intron (ENSMUSG00000021224.15, intron 1 of 12) -8498 ENSMUSG00000113423.1 ENSMUSG00000113423 ENSMUST00000220790 Gm3791 processed_pseudogene Interval_161028 chr8 117031664 117031949 + 0 NA intron (ENSMUSG00000034416.18, intron 27 of 42) protein_coding-intron (ENSMUSG00000034416.18, intron 27 of 42) -4691 ENSMUSG00000085688.1 ENSMUSG00000085688 ENSMUST00000153724 Gm15395 antisense Interval_126057 chr5 77140197 77140582 + 0 NA promoter-TSS (ENSMUSG00000106783.1) lincRNA-promoter-TSS (ENSMUSG00000106783.1) -137 ENSMUSG00000106783.1 ENSMUSG00000106783 ENSMUST00000201649 Chaer1 lincRNA Interval_31162 chr11 98545429 98546349 + 0 NA promoter-TSS (ENSMUSG00000018168.8) protein_coding-promoter-TSS (ENSMUSG00000018168.8) -9554 ENSMUSG00000017195.15 ENSMUSG00000017195 ENSMUST00000126236 Zpbp2 protein_coding Interval_67815 chr16 57415631 57416256 + 0 NA intron (ENSMUSG00000043336.14, intron 1 of 4) protein_coding-intron (ENSMUSG00000043336.14, intron 1 of 4) 62850 ENSMUSG00000043336.14 ENSMUSG00000043336 ENSMUST00000159414 Filip1l protein_coding Interval_137206 chr6 69992607 69993011 + 0 NA intron (ENSMUSG00000076572.6, intron 1 of 1) IG_V_gene-intron (ENSMUSG00000076572.6, intron 1 of 1) 168 ENSMUSG00000076572.6 ENSMUSG00000076572 ENSMUST00000103373 Igkv18-36 IG_V_gene Interval_60765 chr15 76616395 76618181 + 0 NA promoter-TSS (ENSMUSG00000063354.7) protein_coding-promoter-TSS (ENSMUSG00000063354.7) 96 ENSMUSG00000063354.7 ENSMUSG00000063354 ENSMUST00000230317 Slc39a4 protein_coding Interval_92981 chr2 69156292 69156540 + 0 NA exon (ENSMUSG00000034738.8, exon 5 of 16) protein_coding-exon (ENSMUSG00000034738.8, exon 5 of 16) -22889 ENSMUSG00000034738.8 ENSMUSG00000034738 ENSMUST00000141276 Nostrin protein_coding Interval_10944 chr1 177411904 177412220 + 0 NA Intergenic Intergenic 17022 ENSMUSG00000097892.2 ENSMUSG00000097892 ENSMUST00000180591 Gm26801 antisense Interval_83912 chr19 5529019 5529945 + 0 NA intron (ENSMUSG00000109695.1, intron 2 of 3) transcribed_processed_pseudogene-intron (ENSMUSG00000109695.1, intron 2 of 3) -2148 ENSMUSG00000109695.1 ENSMUSG00000109695 ENSMUST00000209326 Gm31166 transcribed_processed_pseudogene Interval_59798 chr15 59360874 59361710 + 0 NA intron (ENSMUSG00000022350.7, intron 7 of 28) protein_coding-intron (ENSMUSG00000022350.7, intron 7 of 28) -8763 ENSMUSG00000022350.7 ENSMUSG00000022350 ENSMUST00000022976 Washc5 protein_coding Interval_129912 chr5 123036830 123037857 + 0 NA TTS (ENSMUSG00000029477.14) protein_coding-TTS (ENSMUSG00000029477.14) 1343 ENSMUSG00000105107.1 ENSMUSG00000105107 ENSMUST00000197455 Gm43412 TEC Interval_21890 chr11 5015456 5016302 + 0 NA TTS (ENSMUSG00000009090.17) protein_coding-TTS (ENSMUSG00000009090.17) -15098 ENSMUSG00000009090.17 ENSMUSG00000009090 ENSMUST00000133007 Ap1b1 protein_coding Interval_92900 chr2 68320587 68320957 + 0 NA intron (ENSMUSG00000027030.15, intron 3 of 10) protein_coding-intron (ENSMUSG00000027030.15, intron 10 of 17) 65909 ENSMUSG00000027030.15 ENSMUSG00000027030 ENSMUST00000149581 Stk39 protein_coding Interval_37581 chr12 70057608 70057848 + 0 NA intron (ENSMUSG00000021068.17, intron 7 of 30) protein_coding-intron (ENSMUSG00000021068.17, intron 7 of 29) 32889 ENSMUSG00000021068.17 ENSMUSG00000021068 ENSMUST00000239242 Nin protein_coding Interval_45529 chr13 55677846 55678123 + 0 NA intron (ENSMUSG00000021500.17, intron 23 of 23) protein_coding-intron (ENSMUSG00000021500.17, intron 21 of 21) 8220 ENSMUSG00000021500.17 ENSMUSG00000021500 ENSMUST00000231097 Ddx46 protein_coding Interval_133402 chr6 4684608 4685852 + 0 NA intron (ENSMUSG00000004631.15, intron 10 of 10) protein_coding-intron (ENSMUSG00000004631.15, intron 8 of 10) 54103 ENSMUSG00000015189.12 ENSMUSG00000015189 ENSMUST00000204372 Casd1 protein_coding Interval_57001 chr15 3962654 3962940 + 0 NA Intergenic Intergenic 10063 ENSMUSG00000022184.8 ENSMUSG00000022184 ENSMUST00000148169 Fbxo4 protein_coding Interval_149563 chr7 99589902 99590968 + 0 NA intron (ENSMUSG00000018909.15, intron 7 of 15) protein_coding-intron (ENSMUSG00000018909.15, intron 7 of 14) -19595 ENSMUSG00000108850.1 ENSMUSG00000108850 ENSMUST00000207191 Gm44914 TEC Interval_47717 chr13 91696265 91698028 + 0 NA intron (ENSMUSG00000003992.15, intron 15 of 15) protein_coding-intron (ENSMUSG00000003992.15, intron 16 of 16) -26110 ENSMUSG00000077278.1 ENSMUSG00000077278 ENSMUST00000104090 Gm22778 snoRNA Interval_41841 chr13 3240702 3241285 + 0 NA Intergenic Intergenic -32284 ENSMUSG00000113271.1 ENSMUSG00000113271 ENSMUST00000222272 Gm40653 lincRNA Interval_19420 chr10 99115619 99117512 + 0 NA intron (ENSMUSG00000019952.15, intron 2 of 12) protein_coding-intron (ENSMUSG00000019952.15, intron 2 of 11) 8406 ENSMUSG00000090035.3 ENSMUSG00000090035 ENSMUST00000161240 Galnt4 protein_coding Interval_104630 chr3 68954400 68954745 + 0 NA intron (ENSMUSG00000027778.15, intron 8 of 19) protein_coding-intron (ENSMUSG00000027778.15, intron 7 of 18) -37249 ENSMUSG00000111756.1 ENSMUSG00000111756 ENSMUST00000217619 Gm48183 TEC Interval_161944 chr8 123965904 123966134 + 0 NA intron (ENSMUSG00000031974.8, intron 5 of 12) protein_coding-intron (ENSMUSG00000031974.8, intron 5 of 12) 16587 ENSMUSG00000110615.1 ENSMUSG00000110615 ENSMUST00000212250 Gm45890 antisense Interval_13114 chr10 11499006 11499538 + 0 NA Intergenic Intergenic -6024 ENSMUSG00000111949.1 ENSMUSG00000111949 ENSMUST00000219639 Gm48679 processed_pseudogene Interval_7791 chr1 133712668 133713154 + 0 NA intron (ENSMUSG00000026463.17, intron 19 of 20) protein_coding-intron (ENSMUSG00000026463.17, intron 19 of 20) -11030 ENSMUSG00000026463.17 ENSMUSG00000026463 ENSMUST00000128692 Atp2b4 protein_coding Interval_136141 chr6 51452554 51453341 + 0 NA intron (ENSMUSG00000029832.16, intron 2 of 2) protein_coding-intron (ENSMUSG00000029832.16, intron 2 of 3) 16937 ENSMUSG00000004980.16 ENSMUSG00000004980 ENSMUST00000205204 Hnrnpa2b1 protein_coding Interval_140685 chr6 120556140 120557103 + 0 NA intron (ENSMUSG00000107744.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000107744.1, intron 1 of 1) 1825 ENSMUSG00000107744.1 ENSMUSG00000107744 ENSMUST00000204672 1700072O05Rik lincRNA Interval_60602 chr15 75624003 75624434 + 0 NA TTS (ENSMUSG00000047003.15) protein_coding-TTS (ENSMUSG00000047003.15) 7539 ENSMUSG00000047003.15 ENSMUSG00000047003 ENSMUST00000161555 Zfp41 protein_coding Interval_70287 chr17 8233282 8233882 + 0 NA Intergenic Intergenic -11476 ENSMUSG00000040899.14 ENSMUSG00000040899 ENSMUST00000231545 Ccr6 protein_coding Interval_54383 chr14 68123348 68125817 + 0 NA exon (ENSMUSG00000022054.11, exon 1 of 3) protein_coding-exon (ENSMUSG00000022054.11, exon 1 of 3) 264 ENSMUSG00000022054.11 ENSMUSG00000022054 ENSMUST00000022638 Nefm protein_coding Interval_54471 chr14 70056528 70057481 + 0 NA intron (ENSMUSG00000022085.4, intron 6 of 6) protein_coding-intron (ENSMUSG00000022085.4, intron 6 of 6) 363 ENSMUSG00000114446.1 ENSMUSG00000114446 ENSMUST00000224990 Gm33524 antisense Interval_161319 chr8 119715106 119715680 + 0 NA TTS (ENSMUSG00000110445.1) TEC-TTS (ENSMUSG00000110445.1) 939 ENSMUSG00000110445.1 ENSMUSG00000110445 ENSMUST00000212203 Gm45747 TEC Interval_55782 chr14 100040092 100040314 + 0 NA intron (ENSMUSG00000072294.5, intron 3 of 7) protein_coding-intron (ENSMUSG00000072294.5, intron 2 of 6) -139812 ENSMUSG00000072294.5 ENSMUSG00000072294 ENSMUST00000226544 Klf12 protein_coding Interval_168385 chr9 79895646 79896181 + 0 NA intron (ENSMUSG00000034898.17, intron 2 of 6) protein_coding-intron (ENSMUSG00000034898.17, intron 2 of 5) -17287 ENSMUSG00000092581.1 ENSMUSG00000092581 ENSMUST00000172721 Gm3211 processed_transcript Interval_77443 chr17 88819710 88821116 + 0 NA Intergenic Intergenic 36209 ENSMUSG00000117566.1 ENSMUSG00000117566 ENSMUST00000234561 Gm9407 processed_pseudogene Interval_24162 chr11 30808287 30808776 + 0 NA intron (ENSMUSG00000040850.17, intron 8 of 46) protein_coding-intron (ENSMUSG00000040850.17, intron 8 of 46) 14139 ENSMUSG00000086986.3 ENSMUSG00000086986 ENSMUST00000121892 Gm12103 processed_pseudogene Interval_34963 chr12 15800588 15801842 + 0 NA promoter-TSS (ENSMUSG00000098480.1) miRNA-promoter-TSS (ENSMUSG00000098480.1) -114 ENSMUSG00000098480.1 ENSMUSG00000098480 ENSMUST00000184042 Mir6387 miRNA Interval_145272 chr7 31077785 31078496 + 0 NA Intergenic Intergenic -1495 ENSMUSG00000057092.12 ENSMUSG00000057092 ENSMUST00000170456 Fxyd3 protein_coding Interval_12835 chr10 6020308 6021534 + 0 NA Intergenic Intergenic -98535 ENSMUSG00000019775.17 ENSMUSG00000019775 ENSMUST00000019909 Rgs17 protein_coding Interval_39985 chr12 100242090 100243036 + 0 NA promoter-TSS (ENSMUSG00000113362.1) lincRNA-promoter-TSS (ENSMUSG00000113362.1) -2311 ENSMUSG00000113362.1 ENSMUSG00000113362 ENSMUST00000220782 Gm40557 lincRNA Interval_8076 chr1 135583151 135583781 + 0 NA intron (ENSMUSG00000009418.16, intron 4 of 30) protein_coding-intron (ENSMUSG00000009418.16, intron 1 of 29) -1307 ENSMUSG00000054412.5 ENSMUSG00000054412 ENSMUST00000067468 Gm4793 antisense Interval_86 GL456221.1 81382 82118 + 0 NA NA NA NA NA Interval_128500 chr5 113674887 113675180 + 0 NA Intergenic Intergenic -24637 ENSMUSG00000042190.12 ENSMUSG00000042190 ENSMUST00000151460 Cmklr1 protein_coding Interval_130704 chr5 129895301 129896698 + 0 NA exon (ENSMUSG00000034173.13, exon 1 of 1) protein_coding-exon (ENSMUSG00000034173.13, exon 1 of 1) 231 ENSMUSG00000034173.13 ENSMUSG00000034173 ENSMUST00000077320 Zbed5 protein_coding Interval_151145 chr7 118807206 118807641 + 0 NA intron (ENSMUSG00000030982.19, intron 6 of 8) protein_coding-intron (ENSMUSG00000030982.19, intron 16 of 23) -18281 ENSMUSG00000030982.19 ENSMUSG00000030982 ENSMUST00000209103 Vps35l protein_coding Interval_148464 chr7 81479882 81481548 + 0 NA intron (ENSMUSG00000062444.15, intron 4 of 4) protein_coding-intron (ENSMUSG00000062444.15, intron 4 of 25) 12964 ENSMUSG00000062444.15 ENSMUSG00000062444 ENSMUST00000208911 Ap3b2 protein_coding Interval_123771 chr5 35391580 35392580 + 0 NA promoter-TSS (ENSMUSG00000103608.1) TEC-promoter-TSS (ENSMUSG00000103608.1) -168 ENSMUSG00000103608.1 ENSMUSG00000103608 ENSMUST00000193163 4930442P19Rik TEC Interval_32894 chr11 112870145 112871503 + 0 NA Intergenic Intergenic 45645 ENSMUSG00000020624.3 ENSMUSG00000020624 ENSMUST00000153429 4933434M16Rik lincRNA Interval_44329 chr13 43715998 43717239 + 0 NA promoter-TSS (ENSMUSG00000110016.1) lincRNA-promoter-TSS (ENSMUSG00000110016.1) -173 ENSMUSG00000110016.1 ENSMUSG00000110016 ENSMUST00000210260 Gm20751 lincRNA Interval_118006 chr4 127861814 127862206 + 0 NA Intergenic Intergenic -49837 ENSMUSG00000087510.1 ENSMUSG00000087510 ENSMUST00000141892 1700112K13Rik lincRNA Interval_145291 chr7 31163678 31164896 + 0 NA TTS (ENSMUSG00000100985.1) antisense-TTS (ENSMUSG00000100985.1) 1929 ENSMUSG00000100985.1 ENSMUSG00000100985 ENSMUST00000190947 Gm10640 antisense Interval_107571 chr3 108546542 108547624 + 0 NA Intergenic Intergenic 7668 ENSMUSG00000088185.1 ENSMUSG00000088185 ENSMUST00000157560 Scarna2 scaRNA Interval_54543 chr14 70585065 70585923 + 0 NA intron (ENSMUSG00000022095.9, intron 15 of 16) protein_coding-intron (ENSMUSG00000022095.9, intron 15 of 16) 7402 ENSMUSG00000045211.5 ENSMUSG00000045211 ENSMUST00000228768 Nudt18 protein_coding Interval_60430 chr15 73703315 73704459 + 0 NA intron (ENSMUSG00000045281.5, intron 1 of 1) protein_coding-intron (ENSMUSG00000045281.5, intron 1 of 1) 3618 ENSMUSG00000045281.5 ENSMUSG00000045281 ENSMUST00000064166 Gpr20 protein_coding Interval_55537 chr14 91236024 91236425 + 0 NA Intergenic Intergenic -36346 ENSMUSG00000115225.1 ENSMUSG00000115225 ENSMUST00000226887 Gm7272 processed_pseudogene Interval_80456 chr18 42345791 42346013 + 0 NA Intergenic Intergenic 44012 ENSMUSG00000092935.1 ENSMUSG00000092935 ENSMUST00000175194 Gm22697 miRNA Interval_161385 chr8 120145919 120146674 + 0 NA TTS (ENSMUSG00000031824.15) protein_coding-TTS (ENSMUSG00000031824.15) 31067 ENSMUSG00000042269.15 ENSMUSG00000042269 ENSMUST00000142478 Fam92b protein_coding Interval_107758 chr3 113565395 113565880 + 0 NA intron (ENSMUSG00000074264.12, intron 3 of 3) protein_coding-intron (ENSMUSG00000074264.12, intron 3 of 10) -33209 ENSMUSG00000070360.5 ENSMUSG00000070360 ENSMUST00000132353 Amy2a1 protein_coding Interval_69032 chr16 90227390 90228366 + 0 NA intron (ENSMUSG00000022983.16, intron 1 of 1) protein_coding-intron (ENSMUSG00000022983.16, intron 1 of 1) 7124 ENSMUSG00000022982.10 ENSMUSG00000022982 ENSMUST00000232505 Sod1 protein_coding Interval_93662 chr2 75672529 75672773 + 0 NA Intergenic Intergenic 13333 ENSMUSG00000059005.13 ENSMUSG00000059005 ENSMUST00000141974 Hnrnpa3 protein_coding Interval_34482 chr12 4551991 4553025 + 0 NA TTS (ENSMUSG00000112819.1) lincRNA-TTS (ENSMUSG00000112819.1) 17030 ENSMUSG00000112819.1 ENSMUSG00000112819 ENSMUST00000220320 Gm46332 lincRNA Interval_89941 chr2 26617619 26618453 + 0 NA intron (ENSMUSG00000092356.2, intron 3 of 6) protein_coding-intron (ENSMUSG00000092356.2, intron 3 of 6) -10458 ENSMUSG00000036186.5 ENSMUSG00000036186 ENSMUST00000144449 Dipk1b protein_coding Interval_145159 chr7 30360253 30360452 + 0 NA exon (ENSMUSG00000036957.8, exon 2 of 3) protein_coding-exon (ENSMUSG00000036957.8, exon 2 of 3) 2420 ENSMUSG00000036957.8 ENSMUSG00000036957 ENSMUST00000046351 Lrfn3 protein_coding Interval_164029 chr9 31039670 31040464 + 0 NA intron (ENSMUSG00000047412.16, intron 1 of 5) protein_coding-intron (ENSMUSG00000047412.16, intron 1 of 5) -13172 ENSMUSG00000047412.16 ENSMUSG00000047412 ENSMUST00000213202 Zbtb44 protein_coding Interval_154740 chr8 23007461 23007777 + 0 NA intron (ENSMUSG00000031543.18, intron 1 of 43) protein_coding-intron (ENSMUSG00000031543.18, intron 1 of 42) -49178 ENSMUSG00000109793.1 ENSMUSG00000109793 ENSMUST00000210691 Gm10043 processed_pseudogene Interval_4094 chr1 68075659 68076115 + 0 NA intron (ENSMUSG00000062209.15, intron 22 of 26) protein_coding-intron (ENSMUSG00000062209.15, intron 22 of 27) 40660 ENSMUSG00000102449.1 ENSMUSG00000102449 ENSMUST00000193344 Gm37100 TEC Interval_2913 chr1 49688528 49688886 + 0 NA Intergenic Intergenic -109121 ENSMUSG00000099882.1 ENSMUSG00000099882 ENSMUST00000186262 Gm28388 processed_pseudogene Interval_155157 chr8 27115410 27115672 + 0 NA intron (ENSMUSG00000031486.15, intron 3 of 6) protein_coding-intron (ENSMUSG00000031486.15, intron 12 of 18) -1828 ENSMUSG00000031486.15 ENSMUSG00000031486 ENSMUST00000179351 Adgra2 protein_coding Interval_139168 chr6 96756402 96756865 + 0 NA Intergenic Intergenic -195769 ENSMUSG00000077598.1 ENSMUSG00000077598 ENSMUST00000104410 Gm26011 snRNA Interval_76978 chr17 85341242 85342181 + 0 NA intron (ENSMUSG00000071037.6, intron 3 of 10) protein_coding-intron (ENSMUSG00000071037.6, intron 3 of 10) -156922 ENSMUSG00000097803.1 ENSMUSG00000097803 ENSMUST00000181130 Rpl31-ps16 processed_pseudogene Interval_165231 chr9 45569572 45570188 + 0 NA intron (ENSMUSG00000032087.11, intron 3 of 32) protein_coding-intron (ENSMUSG00000032087.11, intron 3 of 32) 64932 ENSMUSG00000096202.1 ENSMUSG00000096202 ENSMUST00000179911 Gm22069 snRNA Interval_11223 chr1 180279525 180280065 + 0 NA Intergenic Intergenic 23366 ENSMUSG00000102923.1 ENSMUSG00000102923 ENSMUST00000192164 Gm31728 antisense Interval_149892 chr7 102315636 102315977 + 0 NA intron (ENSMUSG00000030987.5, intron 1 of 12) protein_coding-intron (ENSMUSG00000030987.5, intron 1 of 11) 47479 ENSMUSG00000030987.5 ENSMUSG00000030987 ENSMUST00000210544 Stim1 protein_coding Interval_17494 chr10 77226746 77227505 + 0 NA Intergenic Intergenic 32098 ENSMUSG00000078444.3 ENSMUSG00000078444 ENSMUST00000105408 Gm10941 bidirectional_promoter_lncRNA Interval_21443 chr10 128633912 128634245 + 0 NA exon (ENSMUSG00000002578.18, exon 8 of 8) protein_coding-exon (ENSMUSG00000002578.18, exon 8 of 8) -7554 ENSMUSG00000025362.6 ENSMUSG00000025362 ENSMUST00000219773 Rps26 protein_coding Interval_125893 chr5 75481244 75481885 + 0 NA Intergenic Intergenic 79586 ENSMUSG00000089078.1 ENSMUSG00000089078 ENSMUST00000158453 Gm24502 snRNA Interval_127363 chr5 103424681 103425889 + 0 NA promoter-TSS (ENSMUSG00000034573.14) protein_coding-promoter-TSS (ENSMUSG00000034573.14) -68587 ENSMUSG00000104684.1 ENSMUSG00000104684 ENSMUST00000200007 5430427N15Rik lincRNA Interval_16218 chr10 61500804 61501076 + 0 NA intron (ENSMUSG00000037151.8, intron 2 of 4) protein_coding-intron (ENSMUSG00000037151.8, intron 2 of 4) -2843 ENSMUSG00000112058.1 ENSMUSG00000112058 ENSMUST00000217859 Gm47593 antisense Interval_66767 chr16 37384338 37385400 + 0 NA promoter-TSS (ENSMUSG00000022829.14) protein_coding-promoter-TSS (ENSMUSG00000022829.14) 54 ENSMUSG00000022829.14 ENSMUSG00000022829 ENSMUST00000123629 Stxbp5l protein_coding Interval_106253 chr3 94932490 94933579 + 0 NA promoter-TSS (ENSMUSG00000068874.13) protein_coding-promoter-TSS (ENSMUSG00000068874.13) -125 ENSMUSG00000068874.13 ENSMUSG00000068874 ENSMUST00000145551 Selenbp1 protein_coding Interval_159128 chr8 90876219 90877617 + 0 NA exon (ENSMUSG00000109812.1, exon 1 of 1) TEC-exon (ENSMUSG00000109812.1, exon 1 of 1) 337 ENSMUSG00000109812.1 ENSMUSG00000109812 ENSMUST00000210665 Gm45640 TEC Interval_45592 chr13 56125044 56126080 + 0 NA intron (ENSMUSG00000015937.15, intron 2 of 3) protein_coding-intron (ENSMUSG00000015937.15, intron 2 of 8) 10799 ENSMUSG00000015937.15 ENSMUSG00000015937 ENSMUST00000154564 Macroh2a1 protein_coding Interval_126158 chr5 80457452 80458143 + 0 NA Intergenic Intergenic 358889 ENSMUSG00000095594.1 ENSMUSG00000095594 ENSMUST00000177635 Gm24304 snRNA Interval_112875 chr4 45728552 45728748 + 0 NA Intergenic Intergenic 13481 ENSMUSG00000085305.1 ENSMUSG00000085305 ENSMUST00000124989 Gm12410 lincRNA Interval_51111 chr14 23409595 23410553 + 0 NA intron (ENSMUSG00000063142.15, intron 16 of 27) protein_coding-intron (ENSMUSG00000063142.15, intron 17 of 28) 88930 ENSMUSG00000114803.1 ENSMUSG00000114803 ENSMUST00000225611 Gm46443 processed_pseudogene Interval_152024 chr7 128356037 128356292 + 0 NA Intergenic Intergenic 15697 ENSMUSG00000108608.1 ENSMUSG00000108608 ENSMUST00000205523 Gm6916 transcribed_processed_pseudogene Interval_172128 chrX 7793523 7793844 + 0 NA intron (ENSMUSG00000031153.16, intron 3 of 14) protein_coding-intron (ENSMUSG00000031153.16, intron 3 of 24) 3677 ENSMUSG00000031153.16 ENSMUSG00000031153 ENSMUST00000144946 Gripap1 protein_coding Interval_10201 chr1 167093565 167093877 + 0 NA Intergenic Intergenic -47434 ENSMUSG00000102870.1 ENSMUSG00000102870 ENSMUST00000192761 Gm17868 unprocessed_pseudogene Interval_28948 chr11 79482906 79484603 + 0 NA intron (ENSMUSG00000091523.1, intron 1 of 3) protein_coding-intron (ENSMUSG00000020716.16, intron 36 of 57) 277 ENSMUSG00000091523.1 ENSMUSG00000091523 ENSMUST00000165610 AU040972 antisense Interval_163813 chr9 26770944 26771237 + 0 NA exon (ENSMUSG00000036395.15, exon 10 of 20) protein_coding-exon (ENSMUSG00000036395.15, exon 10 of 20) 32608 ENSMUSG00000036395.15 ENSMUSG00000036395 ENSMUST00000216272 Glb1l2 protein_coding Interval_73907 chr17 45418367 45418667 + 0 NA intron (ENSMUSG00000023932.9, intron 6 of 15) protein_coding-intron (ENSMUSG00000023932.9, intron 6 of 15) 15024 ENSMUSG00000023932.9 ENSMUSG00000023932 ENSMUST00000232910 Cdc5l protein_coding Interval_132111 chr5 142811193 142811394 + 0 NA intron (ENSMUSG00000039477.16, intron 2 of 2) protein_coding-intron (ENSMUSG00000039477.16, intron 2 of 15) 41906 ENSMUSG00000082308.1 ENSMUSG00000082308 ENSMUST00000117498 Gm15770 processed_pseudogene Interval_105650 chr3 88369911 88370144 + 0 NA promoter-TSS (ENSMUSG00000074489.9) protein_coding-promoter-TSS (ENSMUSG00000074489.9) -446 ENSMUSG00000074489.9 ENSMUSG00000074489 ENSMUST00000107542 Bglap3 protein_coding Interval_31225 chr11 98998715 98999472 + 0 NA promoter-TSS (ENSMUSG00000077285.1) snoRNA-promoter-TSS (ENSMUSG00000077285.1) -415 ENSMUSG00000077285.1 ENSMUSG00000077285 ENSMUST00000104097 Gm26394 snoRNA Interval_24896 chr11 40942421 40942655 + 0 NA Intergenic Intergenic 92585 ENSMUSG00000065916.1 ENSMUSG00000065916 ENSMUST00000083982 Gm24446 snRNA Interval_51222 chr14 25246431 25246991 + 0 NA Intergenic Intergenic -103470 ENSMUSG00000114916.1 ENSMUSG00000114916 ENSMUST00000225429 4930572O13Rik lincRNA Interval_121554 chr5 3414015 3414461 + 0 NA intron (ENSMUSG00000040274.11, intron 3 of 7) protein_coding-intron (ENSMUSG00000040274.11, intron 2 of 6) -56711 ENSMUSG00000040274.11 ENSMUSG00000040274 ENSMUST00000199396 Cdk6 protein_coding Interval_166249 chr9 57792324 57792769 + 0 NA promoter-TSS (ENSMUSG00000004661.15) protein_coding-promoter-TSS (ENSMUSG00000004661.15) 3675 ENSMUSG00000004661.15 ENSMUSG00000004661 ENSMUST00000167670 Arid3b protein_coding Interval_130123 chr5 124415001 124415228 + 0 NA promoter-TSS (ENSMUSG00000038095.15) protein_coding-promoter-TSS (ENSMUSG00000038095.15) -9385 ENSMUSG00000038095.15 ENSMUSG00000038095 ENSMUST00000197974 Sbno1 protein_coding Interval_156439 chr8 48213867 48214555 + 0 NA Intergenic Intergenic 56774 ENSMUSG00000110480.1 ENSMUSG00000110480 ENSMUST00000212653 Gm32842 processed_pseudogene Interval_31890 chr11 103638930 103640198 + 0 NA promoter-TSS (ENSMUSG00000020945.13) protein_coding-promoter-TSS (ENSMUSG00000020945.13) -4543 ENSMUSG00000020945.13 ENSMUSG00000020945 ENSMUST00000140430 Lyzl6 protein_coding Interval_110886 chr4 9555771 9555974 + 0 NA intron (ENSMUSG00000028207.18, intron 12 of 22) protein_coding-intron (ENSMUSG00000028207.18, intron 13 of 23) 87845 ENSMUSG00000028207.18 ENSMUSG00000028207 ENSMUST00000130617 Asph protein_coding Interval_173335 chrX 80754824 80755410 + 0 NA Intergenic Intergenic 88804 ENSMUSG00000084300.1 ENSMUSG00000084300 ENSMUST00000117416 Gm6954 processed_pseudogene Interval_164185 chr9 32292647 32293951 + 0 NA Intergenic Intergenic 50938 ENSMUSG00000032034.6 ENSMUSG00000032034 ENSMUST00000214223 Kcnj5 protein_coding Interval_66984 chr16 39001623 39002715 + 0 NA intron (ENSMUSG00000022790.14, intron 1 of 6) protein_coding-intron (ENSMUSG00000022790.14, intron 1 of 6) 74960 ENSMUSG00000089607.1 ENSMUSG00000089607 ENSMUST00000158982 Gm22500 snRNA Interval_130301 chr5 125507701 125508753 + 0 NA intron (ENSMUSG00000029482.4, intron 1 of 4) protein_coding-intron (ENSMUSG00000029482.4, intron 8 of 17) -7016 ENSMUSG00000029482.4 ENSMUSG00000029482 ENSMUST00000200286 Aacs protein_coding Interval_19052 chr10 94093475 94094806 + 0 NA intron (ENSMUSG00000020021.4, intron 5 of 20) protein_coding-intron (ENSMUSG00000020021.4, intron 5 of 20) 4000 ENSMUSG00000110753.1 ENSMUSG00000110753 ENSMUST00000217189 Gm18391 processed_pseudogene Interval_171853 chr9 121784569 121785523 + 0 NA intron (ENSMUSG00000032523.11, intron 10 of 11) protein_coding-intron (ENSMUSG00000032523.11, intron 10 of 11) 6808 ENSMUSG00000032523.11 ENSMUSG00000032523 ENSMUST00000217652 Hhatl protein_coding Interval_65088 chr16 18950942 18952198 + 0 NA intron (ENSMUSG00000022702.16, intron 6 of 11) protein_coding-intron (ENSMUSG00000022702.16, intron 19 of 24) -6905 ENSMUSG00000083658.1 ENSMUSG00000083658 ENSMUST00000120082 Gm15798 processed_pseudogene Interval_90333 chr2 29826763 29828093 + 0 NA promoter-TSS (ENSMUSG00000069020.9) protein_coding-promoter-TSS (ENSMUSG00000069020.9) 86 ENSMUSG00000069020.9 ENSMUSG00000069020 ENSMUST00000123021 Urm1 protein_coding Interval_35822 chr12 30583990 30585193 + 0 NA intron (ENSMUSG00000043061.10, intron 1 of 4) protein_coding-intron (ENSMUSG00000043061.10, intron 1 of 4) -2323 ENSMUSG00000043061.10 ENSMUSG00000043061 ENSMUST00000218826 Tmem18 protein_coding Interval_118277 chr4 129987578 129988394 + 0 NA intron (ENSMUSG00000028782.14, intron 1 of 28) protein_coding-intron (ENSMUSG00000028782.14, intron 1 of 29) -24215 ENSMUSG00000028782.14 ENSMUSG00000028782 ENSMUST00000136787 Adgrb2 protein_coding Interval_65898 chr16 30114943 30115960 + 0 NA Intergenic Intergenic -22569 ENSMUSG00000116997.1 ENSMUSG00000116997 ENSMUST00000232024 Gm20040 processed_pseudogene Interval_104249 chr3 61912841 61913892 + 0 NA Intergenic Intergenic 156428 ENSMUSG00000104489.1 ENSMUSG00000104489 ENSMUST00000193786 Gm9700 processed_pseudogene Interval_68014 chr16 63694103 63694323 + 0 NA intron (ENSMUSG00000052504.7, intron 2 of 5) protein_coding-intron (ENSMUSG00000052504.7, intron 3 of 16) 53321 ENSMUSG00000088992.1 ENSMUSG00000088992 ENSMUST00000158367 Gm22769 snRNA Interval_20737 chr10 120650176 120650596 + 0 NA intron (ENSMUSG00000112716.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000112716.1, intron 1 of 2) 16631 ENSMUSG00000103213.1 ENSMUSG00000103213 ENSMUST00000194273 Gm38289 TEC Interval_88695 chr2 9834883 9835496 + 0 NA Intergenic Intergenic 40210 ENSMUSG00000015619.10 ENSMUSG00000015619 ENSMUST00000142305 Gata3 protein_coding Interval_45721 chr13 57277096 57277498 + 0 NA TTS (ENSMUSG00000114411.1) processed_pseudogene-TTS (ENSMUSG00000114411.1) 619 ENSMUSG00000114411.1 ENSMUSG00000114411 ENSMUST00000224461 Gm48176 processed_pseudogene Interval_2274 chr1 37623833 37624744 + 0 NA exon (ENSMUSG00000026090.16, exon 1 of 4) protein_coding-exon (ENSMUSG00000026090.16, exon 1 of 4) 10029 ENSMUSG00000089767.1 ENSMUSG00000089767 ENSMUST00000160659 4930556I23Rik antisense Interval_59807 chr15 59419755 59420002 + 0 NA intron (ENSMUSG00000059586.10, intron 3 of 7) protein_coding-intron (ENSMUSG00000059586.10, intron 3 of 6) 45593 ENSMUSG00000059586.10 ENSMUSG00000059586 ENSMUST00000079703 Nsmce2 protein_coding Interval_147795 chr7 73595109 73595809 + 0 NA Intergenic Intergenic -13489 ENSMUSG00000108724.1 ENSMUSG00000108724 ENSMUST00000206025 Gm44734 lincRNA Interval_75973 chr17 74001279 74001639 + 0 NA TTS (ENSMUSG00000088060.1) snoRNA-TTS (ENSMUSG00000088060.1) 599 ENSMUSG00000088060.1 ENSMUSG00000088060 ENSMUST00000157435 Gm24475 snoRNA Interval_24861 chr11 40550347 40550518 + 0 NA Intergenic Intergenic 20093 ENSMUSG00000082390.1 ENSMUSG00000082390 ENSMUST00000120460 Gm12136 processed_pseudogene Interval_52692 chr14 48653158 48655865 + 0 NA Intergenic Intergenic 2012 ENSMUSG00000087756.1 ENSMUSG00000087756 ENSMUST00000157131 Gm23469 snRNA Interval_109352 chr3 139573613 139573841 + 0 NA intron (ENSMUSG00000047940.13, intron 12 of 13) protein_coding-intron (ENSMUSG00000047940.13, intron 12 of 13) -75652 ENSMUSG00000106574.1 ENSMUSG00000106574 ENSMUST00000199447 Gm2451 processed_pseudogene Interval_107172 chr3 104298899 104299392 + 0 NA Intergenic Intergenic 67468 ENSMUSG00000022187.2 ENSMUSG00000022187 ENSMUST00000056145 Gm5546 lincRNA Interval_31091 chr11 98074599 98076010 + 0 NA Intergenic Intergenic 10120 ENSMUSG00000084896.1 ENSMUSG00000084896 ENSMUST00000145489 Gm11632 processed_transcript Interval_146628 chr7 48870500 48871493 + 0 NA exon (ENSMUSG00000046179.17, exon 10 of 13) protein_coding-exon (ENSMUSG00000046179.17, exon 10 of 13) 4255 ENSMUSG00000046179.17 ENSMUSG00000046179 ENSMUST00000136142 E2f8 protein_coding Interval_91807 chr2 49748793 49749068 + 0 NA intron (ENSMUSG00000026764.15, intron 2 of 4) protein_coding-intron (ENSMUSG00000026764.15, intron 21 of 25) 16319 ENSMUSG00000026764.15 ENSMUSG00000026764 ENSMUST00000132968 Kif5c protein_coding Interval_141195 chr6 125516649 125517348 + 0 NA Intergenic Intergenic 22570 ENSMUSG00000101162.2 ENSMUSG00000101162 ENSMUST00000185268 Gm26728 processed_transcript Interval_31999 chr11 104362599 104364438 + 0 NA intron (ENSMUSG00000018412.16, intron 4 of 13) protein_coding-intron (ENSMUSG00000018412.16, intron 5 of 14) 61782 ENSMUSG00000106014.1 ENSMUSG00000106014 ENSMUST00000195891 Gm47315 miRNA Interval_159173 chr8 91363447 91363687 + 0 NA intron (ENSMUSG00000055932.15, intron 1 of 6) protein_coding-intron (ENSMUSG00000055932.15, intron 1 of 8) 28378 ENSMUSG00000110233.1 ENSMUSG00000110233 ENSMUST00000209572 Gm45427 TEC Interval_113753 chr4 58205734 58207192 + 0 NA exon (ENSMUSG00000028369.15, exon 1 of 48) protein_coding-exon (ENSMUSG00000028369.15, exon 1 of 48) 149 ENSMUSG00000028369.15 ENSMUSG00000028369 ENSMUST00000146329 Svep1 protein_coding Interval_23122 chr11 20052729 20053339 + 0 NA Intergenic Intergenic 59875 ENSMUSG00000020152.7 ENSMUSG00000020152 ENSMUST00000134779 Actr2 protein_coding Interval_128966 chr5 116350415 116351345 + 0 NA Intergenic Intergenic 30755 ENSMUSG00000106766.1 ENSMUSG00000106766 ENSMUST00000200749 4933424N20Rik TEC Interval_45194 chr13 53125569 53126166 + 0 NA intron (ENSMUSG00000021464.14, intron 4 of 8) protein_coding-intron (ENSMUSG00000021464.14, intron 4 of 8) 96949 ENSMUSG00000112952.1 ENSMUSG00000112952 ENSMUST00000222184 Gm48336 lincRNA Interval_34918 chr12 13455281 13455591 + 0 NA exon (ENSMUSG00000071414.5, exon 1 of 1) processed_pseudogene-exon (ENSMUSG00000071414.5, exon 1 of 1) 534 ENSMUSG00000071414.5 ENSMUSG00000071414 ENSMUST00000166583 Gm6736 processed_pseudogene Interval_121070 chr4 152566748 152567077 + 0 NA Intergenic Intergenic 88734 ENSMUSG00000039577.17 ENSMUSG00000039577 ENSMUST00000123635 Nphp4 protein_coding Interval_127071 chr5 100070138 100070644 + 0 NA Intergenic Intergenic 8420 ENSMUSG00000029326.13 ENSMUSG00000029326 ENSMUST00000200223 Enoph1 protein_coding Interval_101839 chr3 9863455 9864957 + 0 NA Intergenic Intergenic -30843 ENSMUSG00000027508.15 ENSMUSG00000027508 ENSMUST00000159497 Pag1 protein_coding Interval_59140 chr15 44677620 44677916 + 0 NA intron (ENSMUSG00000022340.15, intron 4 of 6) protein_coding-intron (ENSMUSG00000022340.15, intron 5 of 7) 58339 ENSMUSG00000022339.9 ENSMUSG00000022339 ENSMUST00000022964 Ebag9 protein_coding Interval_53241 chr14 55520395 55521409 + 0 NA exon (ENSMUSG00000040632.16, exon 1 of 1) protein_coding-exon (ENSMUSG00000040632.16, exon 1 of 1) 3705 ENSMUSG00000040632.16 ENSMUSG00000040632 ENSMUST00000228902 Nrl protein_coding Interval_131393 chr5 136918792 136919685 + 0 NA promoter-TSS (ENSMUSG00000097908.7) lincRNA-promoter-TSS (ENSMUSG00000097908.7) 57 ENSMUSG00000097908.7 ENSMUSG00000097908 ENSMUST00000181190 4933404O12Rik lincRNA Interval_115027 chr4 88712589 88712930 + 0 NA Intergenic Intergenic -4306 ENSMUSG00000084192.1 ENSMUSG00000084192 ENSMUST00000121577 Gm13282 unprocessed_pseudogene Interval_148608 chr7 83201665 83202404 + 0 NA promoter-TSS (ENSMUSG00000108861.1) lincRNA-promoter-TSS (ENSMUSG00000108861.1) -1710 ENSMUSG00000108861.1 ENSMUSG00000108861 ENSMUST00000207572 5930435M05Rik lincRNA Interval_148500 chr7 81863019 81863368 + 0 NA promoter-TSS (ENSMUSG00000109110.1) antisense-promoter-TSS (ENSMUSG00000109110.1) -666 ENSMUSG00000109110.1 ENSMUSG00000109110 ENSMUST00000207657 Gm45014 antisense Interval_78455 chr18 12965977 12966911 + 0 NA intron (ENSMUSG00000024423.6, intron 1 of 5) protein_coding-intron (ENSMUSG00000024423.6, intron 1 of 5) 4945 ENSMUSG00000089129.1 ENSMUSG00000089129 ENSMUST00000158504 Gm26407 misc_RNA Interval_129435 chr5 120157634 120157859 + 0 NA intron (ENSMUSG00000029594.12, intron 1 of 3) protein_coding-intron (ENSMUSG00000029594.12, intron 21 of 23) -17979 ENSMUSG00000029594.12 ENSMUSG00000029594 ENSMUST00000202788 Rbm19 protein_coding Interval_125371 chr5 66518004 66518839 + 0 NA intron (ENSMUSG00000029207.16, intron 1 of 3) protein_coding-intron (ENSMUSG00000029207.16, intron 2 of 17) 7691 ENSMUSG00000107091.1 ENSMUSG00000107091 ENSMUST00000202454 Gm43343 TEC Interval_74556 chr17 53368354 53368577 + 0 NA Intergenic Intergenic 8538 ENSMUSG00000117241.1 ENSMUSG00000117241 ENSMUST00000232913 Gm9214 processed_pseudogene Interval_63221 chr15 99799549 99800561 + 0 NA intron (ENSMUSG00000023022.14, intron 1 of 1) protein_coding-intron (ENSMUSG00000023022.14, intron 7 of 10) 3071 ENSMUSG00000065643.1 ENSMUSG00000065643 ENSMUST00000083709 Gm25897 snRNA Interval_89105 chr2 16414379 16414631 + 0 NA intron (ENSMUSG00000026748.13, intron 1 of 12) protein_coding-intron (ENSMUSG00000026748.13, intron 1 of 13) -224191 ENSMUSG00000026748.13 ENSMUSG00000026748 ENSMUST00000126173 Plxdc2 protein_coding Interval_137778 chr6 82376866 82378224 + 0 NA Intergenic Intergenic -24789 ENSMUSG00000030043.11 ENSMUSG00000030043 ENSMUST00000203775 Tacr1 protein_coding Interval_111705 chr4 26384486 26384697 + 0 NA Intergenic Intergenic -14384 ENSMUSG00000096105.1 ENSMUSG00000096105 ENSMUST00000178743 Bhmt-ps1 processed_pseudogene Interval_158892 chr8 87780572 87780985 + 0 NA exon (ENSMUSG00000045333.15, exon 3 of 7) protein_coding-exon (ENSMUSG00000045333.15, exon 3 of 7) 144121 ENSMUSG00000089301.1 ENSMUSG00000089301 ENSMUST00000158676 Gm24841 misc_RNA Interval_72596 chr17 30892246 30893419 + 0 NA intron (ENSMUSG00000118341.1, intron 1 of 6) processed_transcript-intron (ENSMUSG00000118341.1, intron 1 of 6) -9027 ENSMUSG00000024027.8 ENSMUSG00000024027 ENSMUST00000236038 Glp1r protein_coding Interval_48207 chr13 97178766 97179996 + 0 NA exon (ENSMUSG00000021665.9, exon 10 of 14) protein_coding-exon (ENSMUSG00000021665.9, exon 10 of 14) 18914 ENSMUSG00000021665.9 ENSMUSG00000021665 ENSMUST00000222700 Hexb protein_coding Interval_115129 chr4 91278458 91278642 + 0 NA intron (ENSMUSG00000008489.18, intron 3 of 3) protein_coding-intron (ENSMUSG00000008489.18, intron 3 of 6) 78132 ENSMUSG00000008489.18 ENSMUSG00000008489 ENSMUST00000176151 Elavl2 protein_coding Interval_85644 chr19 29284893 29286206 + 0 NA intron (ENSMUSG00000024789.13, intron 8 of 23) protein_coding-intron (ENSMUSG00000024789.13, intron 8 of 23) 33108 ENSMUSG00000024789.13 ENSMUSG00000024789 ENSMUST00000238009 Jak2 protein_coding Interval_144118 chr7 19506498 19509983 + 0 NA promoter-TSS (ENSMUSG00000002043.17) protein_coding-promoter-TSS (ENSMUSG00000002043.17) 127 ENSMUSG00000057667.7 ENSMUSG00000057667 ENSMUST00000077408 Bloc1s3 protein_coding Interval_43227 chr13 25958476 25958796 + 0 NA intron (ENSMUSG00000086531.2, intron 1 of 2) lincRNA-intron (ENSMUSG00000086531.2, intron 1 of 3) 27657 ENSMUSG00000086531.2 ENSMUSG00000086531 ENSMUST00000225724 Gm11351 lincRNA Interval_140935 chr6 122832817 122834830 + 0 NA TTS (ENSMUSG00000003154.15) protein_coding-TTS (ENSMUSG00000003154.15) 2446 ENSMUSG00000106580.1 ENSMUSG00000106580 ENSMUST00000196252 Mir7231 miRNA Interval_119196 chr4 136140360 136140784 + 0 NA Intergenic Intergenic 3076 ENSMUSG00000088614.1 ENSMUSG00000088614 ENSMUST00000157989 Gm26001 snRNA Interval_81934 chr18 65985830 65986460 + 0 NA intron (ENSMUSG00000041891.16, intron 11 of 12) protein_coding-intron (ENSMUSG00000041891.16, intron 11 of 13) 16494 ENSMUSG00000041891.16 ENSMUSG00000041891 ENSMUST00000236070 Lman1 protein_coding Interval_7773 chr1 133585973 133586188 + 0 NA Intergenic Intergenic -15143 ENSMUSG00000064814.1 ENSMUSG00000064814 ENSMUST00000082880 Gm23939 snoRNA Interval_96719 chr2 127433348 127433752 + 0 NA intron (ENSMUSG00000046338.4, intron 13 of 21) protein_coding-intron (ENSMUSG00000046338.4, intron 13 of 21) 8351 ENSMUSG00000046338.4 ENSMUSG00000046338 ENSMUST00000062211 Gpat2 protein_coding Interval_81497 chr18 61162409 61163527 + 0 NA exon (ENSMUSG00000024622.8, exon 6 of 21) protein_coding-exon (ENSMUSG00000024622.8, exon 6 of 21) 4661 ENSMUSG00000024622.8 ENSMUSG00000024622 ENSMUST00000237498 Hmgxb3 protein_coding Interval_39807 chr12 98622882 98623753 + 0 NA Intergenic Intergenic -9693 ENSMUSG00000021007.14 ENSMUSG00000021007 ENSMUST00000152482 Spata7 protein_coding Interval_117187 chr4 120364729 120365069 + 0 NA Intergenic Intergenic -40482 ENSMUSG00000000085.16 ENSMUSG00000000085 ENSMUST00000133169 Scmh1 protein_coding Interval_12340 chr1 192251226 192251776 + 0 NA intron (ENSMUSG00000058248.12, intron 5 of 10) protein_coding-intron (ENSMUSG00000058248.12, intron 5 of 10) 114156 ENSMUSG00000097316.2 ENSMUSG00000097316 ENSMUST00000195083 Gm10516 antisense Interval_7829 chr1 133968376 133968591 + 0 NA intron (ENSMUSG00000100987.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000100987.1, intron 1 of 1) 6321 ENSMUSG00000100987.1 ENSMUSG00000100987 ENSMUST00000188504 Gm1627 lincRNA Interval_111587 chr4 24048339 24048989 + 0 NA Intergenic Intergenic -114710 ENSMUSG00000100395.1 ENSMUSG00000100395 ENSMUST00000188547 Gm28448 lincRNA Interval_155955 chr8 41260008 41260383 + 0 NA TTS (ENSMUSG00000031592.10) protein_coding-TTS (ENSMUSG00000031592.10) 20417 ENSMUSG00000031592.10 ENSMUSG00000031592 ENSMUST00000211247 Pcm1 protein_coding Interval_42401 chr13 13139223 13139864 + 0 NA Intergenic Intergenic -18280 ENSMUSG00000113675.1 ENSMUSG00000113675 ENSMUST00000220991 Gm18259 processed_pseudogene Interval_107742 chr3 112500103 112500329 + 0 NA Intergenic Intergenic -91347 ENSMUSG00000105785.1 ENSMUSG00000105785 ENSMUST00000198956 Gm42526 processed_pseudogene Interval_137589 chr6 73899919 73900569 + 0 NA Intergenic Intergenic -14395 ENSMUSG00000107646.1 ENSMUSG00000107646 ENSMUST00000203582 Gm44225 processed_pseudogene Interval_13280 chr10 14056723 14057685 + 0 NA intron (ENSMUSG00000015501.10, intron 2 of 3) protein_coding-intron (ENSMUSG00000015501.10, intron 1 of 8) 90180 ENSMUSG00000015501.10 ENSMUSG00000015501 ENSMUST00000191464 Hivep2 protein_coding Interval_60859 chr15 77196177 77196638 + 0 NA intron (ENSMUSG00000033565.18, intron 1 of 3) protein_coding-intron (ENSMUSG00000033565.18, intron 2 of 12) -18143 ENSMUSG00000116185.1 ENSMUSG00000116185 ENSMUST00000230993 Gm49411 TEC Interval_110062 chr3 152898961 152899138 + 0 NA intron (ENSMUSG00000039037.5, intron 2 of 4) protein_coding-intron (ENSMUSG00000039037.5, intron 2 of 4) -21191 ENSMUSG00000090017.1 ENSMUSG00000090017 ENSMUST00000160076 Gm16213 antisense Interval_102437 chr3 26002279 26002557 + 0 NA intron (ENSMUSG00000063887.13, intron 3 of 7) protein_coding-intron (ENSMUSG00000063887.13, intron 1 of 5) 271175 ENSMUSG00000104295.1 ENSMUSG00000104295 ENSMUST00000192273 Gm6197 processed_pseudogene Interval_82553 chr18 75125893 75126874 + 0 NA intron (ENSMUSG00000035765.10, intron 1 of 2) protein_coding-intron (ENSMUSG00000035765.10, intron 12 of 16) 958 ENSMUSG00000035765.10 ENSMUSG00000035765 ENSMUST00000236840 Dym protein_coding Interval_44997 chr13 51238824 51239046 + 0 NA Intergenic Intergenic -32824 ENSMUSG00000113521.1 ENSMUSG00000113521 ENSMUST00000222129 Gm29787 processed_pseudogene Interval_88858 chr2 11704691 11706649 + 0 NA promoter-TSS (ENSMUSG00000023206.16) protein_coding-promoter-TSS (ENSMUSG00000023206.16) 283 ENSMUSG00000023206.16 ENSMUSG00000023206 ENSMUST00000139774 Il15ra protein_coding Interval_36351 chr12 41783419 41783743 + 0 NA intron (ENSMUSG00000056899.10, intron 5 of 5) protein_coding-intron (ENSMUSG00000056899.10, intron 6 of 6) 44942 ENSMUSG00000113105.1 ENSMUSG00000113105 ENSMUST00000221020 Gm47371 antisense Interval_75940 chr17 73282361 73283228 + 0 NA Intergenic Intergenic 30249 ENSMUSG00000117292.1 ENSMUSG00000117292 ENSMUST00000233479 E330032C10Rik lincRNA Interval_90411 chr2 30279922 30281054 + 0 NA promoter-TSS (ENSMUSG00000098794.1) protein_coding-promoter-TSS (ENSMUSG00000098794.1) -555 ENSMUSG00000098794.1 ENSMUSG00000098794 ENSMUST00000143119 Gm28038 protein_coding Interval_32553 chr11 108491158 108491359 + 0 NA intron (ENSMUSG00000020728.17, intron 8 of 26) protein_coding-intron (ENSMUSG00000020728.17, intron 9 of 27) 42406 ENSMUSG00000086761.1 ENSMUSG00000086761 ENSMUST00000137907 Cep112os1 antisense Interval_101124 chr2 178175207 178175758 + 0 NA exon (ENSMUSG00000027525.18, exon 1 of 13) protein_coding-exon (ENSMUSG00000027525.18, exon 1 of 13) -97057 ENSMUSG00000078861.8 ENSMUSG00000078861 ENSMUST00000108923 Zfp931 protein_coding Interval_1628 chr1 30414971 30415501 + 0 NA Intergenic Intergenic -81839 ENSMUSG00000098883.1 ENSMUSG00000098883 ENSMUST00000184585 Gm27430 miRNA Interval_75263 chr17 65548806 65549080 + 0 NA Intergenic Intergenic 11833 ENSMUSG00000117158.1 ENSMUSG00000117158 ENSMUST00000233030 Gm49866 processed_pseudogene Interval_45296 chr13 54129739 54130231 + 0 NA Intergenic Intergenic -10950 ENSMUSG00000114042.1 ENSMUSG00000114042 ENSMUST00000220543 Gm18473 processed_pseudogene Interval_135873 chr6 48085551 48087146 + 0 NA exon (ENSMUSG00000057691.8, exon 1 of 7) protein_coding-exon (ENSMUSG00000057691.8, exon 1 of 7) -4070 ENSMUSG00000057691.8 ENSMUSG00000057691 ENSMUST00000203994 Zfp746 protein_coding Interval_118573 chr4 132579695 132580007 + 0 NA exon (ENSMUSG00000056529.7, exon 2 of 2) protein_coding-exon (ENSMUSG00000056529.7, exon 2 of 2) 15784 ENSMUSG00000056529.7 ENSMUSG00000056529 ENSMUST00000070690 Ptafr protein_coding Interval_13135 chr10 12125696 12126353 + 0 NA Intergenic Intergenic -94584 ENSMUSG00000112775.1 ENSMUSG00000112775 ENSMUST00000220015 Gm48722 lincRNA Interval_60148 chr15 66441050 66442507 + 0 NA intron (ENSMUSG00000022375.6, intron 8 of 11) protein_coding-intron (ENSMUSG00000022375.6, intron 8 of 11) 59132 ENSMUSG00000022375.6 ENSMUSG00000022375 ENSMUST00000023006 Lrrc6 protein_coding Interval_129893 chr5 122947478 122947979 + 0 NA TTS (ENSMUSG00000029475.17) protein_coding-TTS (ENSMUSG00000029475.17) -26180 ENSMUSG00000029475.17 ENSMUSG00000029475 ENSMUST00000150543 Kdm2b protein_coding Interval_165063 chr9 44249082 44250735 + 0 NA promoter-TSS (ENSMUSG00000032105.5) protein_coding-promoter-TSS (ENSMUSG00000032105.5) 28 ENSMUSG00000032105.5 ENSMUSG00000032105 ENSMUST00000213186 Pdzd3 protein_coding Interval_4009 chr1 66305909 66306120 + 0 NA TTS (ENSMUSG00000088850.1) snoRNA-TTS (ENSMUSG00000088850.1) 125 ENSMUSG00000088850.1 ENSMUSG00000088850 ENSMUST00000158225 Gm24729 snoRNA Interval_135941 chr6 49003369 49003647 + 0 NA Intergenic Intergenic -3892 ENSMUSG00000107656.1 ENSMUSG00000107656 ENSMUST00000203494 4930563H07Rik antisense Interval_80129 chr18 37761349 37762018 + 0 NA promoter-TSS (ENSMUSG00000103081.3) polymorphic_pseudogene-promoter-TSS (ENSMUSG00000103081.3) -118 ENSMUSG00000103081.3 ENSMUSG00000103081 ENSMUST00000195764 Pcdhgb8 polymorphic_pseudogene Interval_37893 chr12 72834770 72835789 + 0 NA Intergenic Intergenic 17567 ENSMUSG00000113779.1 ENSMUSG00000113779 ENSMUST00000222961 Gm33785 lincRNA Interval_122922 chr5 27380755 27381362 + 0 NA intron (ENSMUSG00000061576.15, intron 2 of 3) protein_coding-intron (ENSMUSG00000061576.15, intron 1 of 25) 120304 ENSMUSG00000048703.9 ENSMUSG00000048703 ENSMUST00000124535 Speer4b protein_coding Interval_11656 chr1 184033421 184034884 + 0 NA promoter-TSS (ENSMUSG00000039384.8) protein_coding-promoter-TSS (ENSMUSG00000039384.8) 149 ENSMUSG00000044854.7 ENSMUSG00000044854 ENSMUST00000050306 1700056E22Rik protein_coding Interval_160474 chr8 109801495 109801791 + 0 NA intron (ENSMUSG00000031731.16, intron 1 of 2) protein_coding-intron (ENSMUSG00000031731.16, intron 1 of 22) -37652 ENSMUSG00000077549.1 ENSMUSG00000077549 ENSMUST00000104361 Snord71 snoRNA Interval_86422 chr19 40366307 40366823 + 0 NA intron (ENSMUSG00000025006.18, intron 3 of 3) protein_coding-intron (ENSMUSG00000025006.18, intron 6 of 21) 10309 ENSMUSG00000025006.18 ENSMUSG00000025006 ENSMUST00000225293 Sorbs1 protein_coding Interval_83410 chr18 84967533 84968223 + 0 NA intron (ENSMUSG00000034391.12, intron 8 of 9) protein_coding-intron (ENSMUSG00000034391.12, intron 8 of 9) -16354 ENSMUSG00000024645.5 ENSMUSG00000024645 ENSMUST00000235591 Timm21 protein_coding Interval_21585 chr10 130302132 130303283 + 0 NA Intergenic Intergenic -22467 ENSMUSG00000048015.4 ENSMUSG00000048015 ENSMUST00000061571 Neurod4 protein_coding Interval_163543 chr9 22010757 22012556 + 0 NA intron (ENSMUSG00000003402.14, intron 11 of 17) protein_coding-intron (ENSMUSG00000003402.14, intron 11 of 17) 8850 ENSMUSG00000003402.14 ENSMUSG00000003402 ENSMUST00000214565 Prkcsh protein_coding Interval_41384 chr12 113207485 113207709 + 0 NA Intergenic Intergenic -6552 ENSMUSG00000087842.1 ENSMUSG00000087842 ENSMUST00000157217 Gm25622 snRNA Interval_47881 chr13 94132122 94132788 + 0 NA intron (ENSMUSG00000045312.12, intron 2 of 2) protein_coding-intron (ENSMUSG00000045312.12, intron 2 of 3) 7662 ENSMUSG00000087319.1 ENSMUSG00000087319 ENSMUST00000134284 Gm15907 lincRNA Interval_118742 chr4 133484021 133484876 + 0 NA intron (ENSMUSG00000046694.6, intron 1 of 1) protein_coding-intron (ENSMUSG00000046694.6, intron 1 of 1) -1922 ENSMUSG00000086850.1 ENSMUSG00000086850 ENSMUST00000132840 Gm13257 antisense Interval_113577 chr4 56801817 56803006 + 0 NA promoter-TSS (ENSMUSG00000028431.11) protein_coding-promoter-TSS (ENSMUSG00000028431.11) 66 ENSMUSG00000038827.11 ENSMUSG00000038827 ENSMUST00000147763 Abitram protein_coding Interval_48408 chr13 98844350 98844540 + 0 NA exon (ENSMUSG00000009470.17, exon 24 of 24) protein_coding-exon (ENSMUSG00000009470.17, exon 24 of 24) 25878 ENSMUSG00000009470.17 ENSMUSG00000009470 ENSMUST00000179271 Tnpo1 protein_coding Interval_20660 chr10 120089531 120089916 + 0 NA exon (ENSMUSG00000020228.11, exon 12 of 13) protein_coding-exon (ENSMUSG00000020228.11, exon 12 of 13) 23142 ENSMUSG00000020228.11 ENSMUSG00000020228 ENSMUST00000154501 Helb protein_coding Interval_22416 chr11 9873944 9874812 + 0 NA Intergenic Intergenic -136757 ENSMUSG00000081629.1 ENSMUSG00000081629 ENSMUST00000117907 Eif3s6-ps1 processed_pseudogene Interval_43332 chr13 29313635 29313932 + 0 NA intron (ENSMUSG00000006191.17, intron 15 of 16) protein_coding-intron (ENSMUSG00000006191.17, intron 15 of 16) -77163 ENSMUSG00000086423.1 ENSMUSG00000086423 ENSMUST00000137593 Gm11364 sense_intronic Interval_75277 chr17 65650802 65652164 + 0 NA TTS (ENSMUSG00000056515.9) protein_coding-TTS (ENSMUSG00000056515.9) 10095 ENSMUSG00000117114.1 ENSMUSG00000117114 ENSMUST00000233942 Gm49867 processed_pseudogene Interval_105059 chr3 80695096 80695683 + 0 NA intron (ENSMUSG00000033981.14, intron 12 of 12) protein_coding-intron (ENSMUSG00000033981.14, intron 12 of 15) -3076 ENSMUSG00000093226.1 ENSMUSG00000093226 ENSMUST00000175485 Gm25749 miRNA Interval_4883 chr1 81316767 81317217 + 0 NA intron (ENSMUSG00000054976.14, intron 6 of 6) protein_coding-intron (ENSMUSG00000054976.14, intron 6 of 6) 205349 ENSMUSG00000104029.1 ENSMUSG00000104029 ENSMUST00000192484 Gm37210 TEC Interval_122237 chr5 20547993 20548181 + 0 NA intron (ENSMUSG00000040003.18, intron 2 of 4) protein_coding-intron (ENSMUSG00000040003.18, intron 13 of 22) -40509 ENSMUSG00000106240.1 ENSMUSG00000106240 ENSMUST00000196129 Gm3544 processed_pseudogene Interval_55213 chr14 79356728 79357392 + 0 NA intron (ENSMUSG00000022020.15, intron 9 of 15) protein_coding-intron (ENSMUSG00000022020.15, intron 10 of 19) -6239 ENSMUSG00000022020.15 ENSMUSG00000022020 ENSMUST00000165337 Naa16 protein_coding Interval_26702 chr11 59838891 59840174 + 0 NA promoter-TSS (ENSMUSG00000032615.14) protein_coding-promoter-TSS (ENSMUSG00000032615.14) 85 ENSMUSG00000032615.14 ENSMUSG00000032615 ENSMUST00000137695 Nt5m protein_coding Interval_56796 chr14 122138384 122138665 + 0 NA intron (ENSMUSG00000025544.13, intron 5 of 16) protein_coding-intron (ENSMUSG00000025544.13, intron 5 of 16) 16971 ENSMUSG00000090674.1 ENSMUSG00000090674 ENSMUST00000166043 Gm17082 processed_pseudogene Interval_23530 chr11 23163669 23164099 + 0 NA intron (ENSMUSG00000086366.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000086366.1, intron 1 of 2) 9022 ENSMUSG00000088495.1 ENSMUSG00000088495 ENSMUST00000157870 Gm24398 snoRNA Interval_60044 chr15 64200657 64200867 + 0 NA intron (ENSMUSG00000022377.16, intron 4 of 30) protein_coding-intron (ENSMUSG00000022377.16, intron 4 of 30) -76956 ENSMUSG00000022377.16 ENSMUSG00000022377 ENSMUST00000175963 Asap1 protein_coding Interval_153501 chr7 145252543 145253843 + 0 NA TTS (ENSMUSG00000048677.9) protein_coding-TTS (ENSMUSG00000048677.9) 30729 ENSMUSG00000048677.9 ENSMUSG00000048677 ENSMUST00000209156 Tpcn2 protein_coding Interval_32093 chr11 105217606 105217814 + 0 NA intron (ENSMUSG00000020694.17, intron 3 of 6) protein_coding-intron (ENSMUSG00000020694.17, intron 5 of 20) 8857 ENSMUSG00000020694.17 ENSMUSG00000020694 ENSMUST00000146910 Tlk2 protein_coding Interval_38636 chr12 80728387 80729016 + 0 NA Intergenic Intergenic 6969 ENSMUSG00000066438.6 ENSMUSG00000066438 ENSMUST00000153762 Plekhd1 protein_coding Interval_74853 chr17 56876107 56878107 + 0 NA intron (ENSMUSG00000024209.9, intron 2 of 2) protein_coding-intron (ENSMUSG00000024209.9, intron 2 of 13) 1604 ENSMUSG00000024209.9 ENSMUSG00000024209 ENSMUST00000125425 Acsbg3 protein_coding Interval_64074 chr16 7246513 7246724 + 0 NA intron (ENSMUSG00000008658.16, intron 2 of 12) protein_coding-intron (ENSMUSG00000008658.16, intron 4 of 14) 52871 ENSMUSG00000008658.16 ENSMUSG00000008658 ENSMUST00000231031 Rbfox1 protein_coding Interval_65075 chr16 18884061 18884649 + 0 NA intron (ENSMUSG00000022702.16, intron 1 of 15) protein_coding-intron (ENSMUSG00000022702.16, intron 1 of 24) -7746 ENSMUSG00000022706.16 ENSMUSG00000022706 ENSMUST00000232123 Mrpl40 protein_coding Interval_87209 chr19 46908957 46909751 + 0 NA intron (ENSMUSG00000025041.17, intron 3 of 3) protein_coding-intron (ENSMUSG00000025041.17, intron 3 of 18) 27859 ENSMUSG00000117814.1 ENSMUSG00000117814 ENSMUST00000236822 Gm50431 lincRNA Interval_19473 chr10 99841250 99842649 + 0 NA intron (ENSMUSG00000113032.1, intron 1 of 1) antisense-intron (ENSMUSG00000113032.1, intron 1 of 1) 24071 ENSMUSG00000112463.1 ENSMUSG00000112463 ENSMUST00000219892 Gm47579 processed_pseudogene Interval_50186 chr14 8935173 8935604 + 0 NA Intergenic Intergenic -9208 ENSMUSG00000114464.1 ENSMUSG00000114464 ENSMUST00000225474 Gm18071 processed_pseudogene Interval_148506 chr7 81933232 81935074 + 0 NA promoter-TSS (ENSMUSG00000025104.13) protein_coding-promoter-TSS (ENSMUSG00000025104.13) -130 ENSMUSG00000025104.13 ENSMUSG00000025104 ENSMUST00000149288 Hdgfl3 protein_coding Interval_2122 chr1 36573700 36574436 + 0 NA intron (ENSMUSG00000046337.17, intron 4 of 5) protein_coding-intron (ENSMUSG00000046337.17, intron 12 of 14) 16367 ENSMUSG00000087589.3 ENSMUSG00000087589 ENSMUST00000149224 D430040D24Rik processed_transcript Interval_35166 chr12 17727620 17728272 + 0 NA promoter-TSS (ENSMUSG00000071379.2) protein_coding-promoter-TSS (ENSMUSG00000071379.2) -280 ENSMUSG00000071379.2 ENSMUSG00000071379 ENSMUST00000222944 Hpcal1 protein_coding Interval_73527 chr17 39128953 39129804 + 0 NA Intergenic Intergenic -9375 ENSMUSG00000117240.1 ENSMUSG00000117240 ENSMUST00000233660 Gm49827 unprocessed_pseudogene Interval_120994 chr4 152115645 152116534 + 0 NA promoter-TSS (ENSMUSG00000024793.14) protein_coding-promoter-TSS (ENSMUSG00000024793.14) -1882 ENSMUSG00000024793.14 ENSMUSG00000024793 ENSMUST00000153619 Tnfrsf25 protein_coding Interval_174534 chrX 157282815 157283893 + 0 NA intron (ENSMUSG00000057457.11, intron 12 of 14) protein_coding-intron (ENSMUSG00000057457.11, intron 12 of 21) 16267 ENSMUSG00000077609.1 ENSMUSG00000077609 ENSMUST00000104421 Gm25795 snoRNA Interval_77584 chr17 92456658 92457030 + 0 NA Intergenic Intergenic 71666 ENSMUSG00000098122.1 ENSMUSG00000098122 ENSMUST00000182438 Gm27039 processed_pseudogene Interval_82485 chr18 74414969 74416441 + 0 NA Intergenic Intergenic -5100 ENSMUSG00000118303.1 ENSMUSG00000118303 ENSMUST00000235981 Gm50168 processed_pseudogene Interval_136249 chr6 52268453 52269075 + 0 NA Intergenic Intergenic 2180 ENSMUSG00000098538.1 ENSMUSG00000098538 ENSMUST00000184459 Gm27866 misc_RNA Interval_89251 chr2 18453312 18454807 + 0 NA Intergenic Intergenic -114067 ENSMUSG00000081181.1 ENSMUSG00000081181 ENSMUST00000120891 Gm13353 processed_pseudogene Interval_114194 chr4 66735782 66736013 + 0 NA Intergenic Intergenic -10353 ENSMUSG00000082053.1 ENSMUSG00000082053 ENSMUST00000118844 Gm11220 processed_pseudogene Interval_26731 chr11 60070371 60071166 + 0 NA Intergenic Intergenic -28779 ENSMUSG00000098502.1 ENSMUSG00000098502 ENSMUST00000183502 Gm27511 misc_RNA Interval_27718 chr11 69654473 69657905 + 0 NA TTS (ENSMUSG00000018761.14) protein_coding-TTS (ENSMUSG00000018761.14) 875 ENSMUSG00000041287.5 ENSMUSG00000041287 ENSMUST00000047373 Sox15 protein_coding Interval_138220 chr6 86401058 86401406 + 0 NA Intergenic Intergenic -4091 ENSMUSG00000029998.14 ENSMUSG00000029998 ENSMUST00000203960 Pcyox1 protein_coding Interval_122737 chr5 24983470 24983849 + 0 NA intron (ENSMUSG00000028944.14, intron 3 of 15) protein_coding-intron (ENSMUSG00000028944.14, intron 3 of 15) -2183 ENSMUSG00000059631.6 ENSMUSG00000059631 ENSMUST00000075081 1500035N22Rik lincRNA Interval_49935 chr13 118494400 118495619 + 0 NA Intergenic Intergenic 15904 ENSMUSG00000114668.1 ENSMUSG00000114668 ENSMUST00000225301 Gm47563 processed_pseudogene Interval_66367 chr16 33435325 33436152 + 0 NA TTS (ENSMUSG00000022811.17) protein_coding-TTS (ENSMUSG00000022811.17) 54875 ENSMUSG00000022811.17 ENSMUSG00000022811 ENSMUST00000089677 Zfp148 protein_coding Interval_159254 chr8 92365527 92365770 + 0 NA intron (ENSMUSG00000031737.11, intron 4 of 4) protein_coding-intron (ENSMUSG00000031737.11, intron 4 of 4) 8023 ENSMUSG00000031737.11 ENSMUSG00000031737 ENSMUST00000034184 Irx5 protein_coding Interval_54392 chr14 68197226 68199784 + 0 NA Intergenic Intergenic -19748 ENSMUSG00000114925.1 ENSMUSG00000114925 ENSMUST00000223651 Gm47212 lincRNA Interval_675 chr1 9788116 9788769 + 0 NA intron (ENSMUSG00000097893.8, intron 1 of 2) antisense-intron (ENSMUSG00000097893.8, intron 5 of 6) 14111 ENSMUSG00000046334.4 ENSMUSG00000046334 ENSMUST00000063059 Gm6195 processed_pseudogene Interval_120507 chr4 149057051 149057795 + 0 NA intron (ENSMUSG00000028975.16, intron 2 of 3) protein_coding-intron (ENSMUSG00000028975.16, intron 2 of 8) -38960 ENSMUSG00000081086.1 ENSMUSG00000081086 ENSMUST00000118516 Gm9506 processed_pseudogene Interval_13916 chr10 24622628 24622830 + 0 NA Intergenic Intergenic 27003 ENSMUSG00000019997.11 ENSMUSG00000019997 ENSMUST00000129142 Ccn2 protein_coding Interval_123584 chr5 33635438 33636026 + 0 NA intron (ENSMUSG00000004642.13, intron 7 of 7) protein_coding-intron (ENSMUSG00000004642.13, intron 7 of 7) 5807 ENSMUSG00000097271.1 ENSMUSG00000097271 ENSMUST00000181102 Gm9903 protein_coding Interval_19256 chr10 95828592 95828944 + 0 NA intron (ENSMUSG00000110353.1, intron 1 of 3) protein_coding-intron (ENSMUSG00000110353.1, intron 1 of 2) -10873 ENSMUSG00000112771.1 ENSMUSG00000112771 ENSMUST00000218099 Gm47718 lincRNA Interval_138103 chr6 85193804 85194324 + 0 NA exon (ENSMUSG00000033726.8, exon 2 of 3) protein_coding-exon (ENSMUSG00000033726.8, exon 2 of 3) 545 ENSMUSG00000033726.8 ENSMUSG00000033726 ENSMUST00000173919 Emx1 protein_coding Interval_122296 chr5 21012806 21013085 + 0 NA intron (ENSMUSG00000028771.13, intron 4 of 9) protein_coding-intron (ENSMUSG00000028771.13, intron 6 of 17) -18807 ENSMUSG00000106158.1 ENSMUSG00000106158 ENSMUST00000196295 Gm43216 TEC Interval_44489 chr13 45345590 45346243 + 0 NA Intergenic Intergenic -45011 ENSMUSG00000038175.10 ENSMUSG00000038175 ENSMUST00000222178 Mylip protein_coding Interval_95862 chr2 117342004 117343610 + 0 NA promoter-TSS (ENSMUSG00000027347.18) protein_coding-promoter-TSS (ENSMUSG00000027347.18) 70 ENSMUSG00000027347.18 ENSMUSG00000027347 ENSMUST00000110898 Rasgrp1 protein_coding Interval_41347 chr12 112976147 112977506 + 0 NA promoter-TSS (ENSMUSG00000002803.14) protein_coding-promoter-TSS (ENSMUSG00000002803.14) -120 ENSMUSG00000002803.14 ENSMUSG00000002803 ENSMUST00000223508 Btbd6 protein_coding Interval_149385 chr7 97984312 97985083 + 0 NA intron (ENSMUSG00000035582.13, intron 10 of 16) protein_coding-intron (ENSMUSG00000035582.13, intron 11 of 17) 26876 ENSMUSG00000035582.13 ENSMUSG00000035582 ENSMUST00000170049 Gdpd4 protein_coding Interval_135907 chr6 48596736 48597877 + 0 NA TTS (ENSMUSG00000052751.16) protein_coding-TTS (ENSMUSG00000052751.16) 3365 ENSMUSG00000107789.1 ENSMUSG00000107789 ENSMUST00000204121 Gm44965 protein_coding Interval_124782 chr5 53955661 53956155 + 0 NA Intergenic Intergenic 37464 ENSMUSG00000107173.1 ENSMUSG00000107173 ENSMUST00000201049 Gm43266 TEC Interval_11302 chr1 180841974 180842207 + 0 NA Intergenic Intergenic 9321 ENSMUSG00000084558.1 ENSMUSG00000084558 ENSMUST00000122609 Gm24836 snRNA Interval_85167 chr19 23281828 23283446 + 0 NA intron (ENSMUSG00000117837.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000117837.1, intron 1 of 2) 541 ENSMUSG00000117837.1 ENSMUSG00000117837 ENSMUST00000236341 Gm41821 lincRNA Interval_51984 chr14 34434418 34435365 + 0 NA intron (ENSMUSG00000021796.15, intron 4 of 10) protein_coding-intron (ENSMUSG00000021796.15, intron 5 of 12) 59170 ENSMUSG00000041445.9 ENSMUSG00000041445 ENSMUST00000227130 Mmrn2 protein_coding Interval_24466 chr11 33475731 33476289 + 0 NA intron (ENSMUSG00000040594.19, intron 11 of 20) protein_coding-intron (ENSMUSG00000040594.19, intron 11 of 11) -23496 ENSMUSG00000040594.19 ENSMUSG00000040594 ENSMUST00000147751 Ranbp17 protein_coding Interval_163885 chr9 27571748 27572122 + 0 NA Intergenic Intergenic 11457 ENSMUSG00000110892.1 ENSMUSG00000110892 ENSMUST00000215197 Gm18585 processed_pseudogene Interval_74699 chr17 56040073 56040994 + 0 NA promoter-TSS (ENSMUSG00000002835.9) protein_coding-promoter-TSS (ENSMUSG00000002835.9) -3957 ENSMUSG00000003200.10 ENSMUSG00000003200 ENSMUST00000233034 Sh3gl1 protein_coding Interval_85184 chr19 23496410 23498751 + 0 NA Intergenic Intergenic -49138 ENSMUSG00000033207.7 ENSMUSG00000033207 ENSMUST00000236349 Mamdc2 protein_coding Interval_81091 chr18 53810049 53810561 + 0 NA Intergenic Intergenic -51883 ENSMUSG00000073563.3 ENSMUSG00000073563 ENSMUST00000236399 Csnk1g3 protein_coding Interval_110941 chr4 10639112 10639463 + 0 NA intron (ENSMUSG00000086080.7, intron 1 of 3) lincRNA-intron (ENSMUSG00000086080.7, intron 1 of 3) 58475 ENSMUSG00000081361.1 ENSMUSG00000081361 ENSMUST00000118586 Gm11813 processed_pseudogene Interval_166053 chr9 56120881 56121586 + 0 NA promoter-TSS (ENSMUSG00000032322.14) protein_coding-promoter-TSS (ENSMUSG00000032322.14) 31257 ENSMUSG00000032322.14 ENSMUSG00000032322 ENSMUST00000132800 Pstpip1 protein_coding Interval_85034 chr19 21698118 21698376 + 0 NA Intergenic Intergenic 17613 ENSMUSG00000047368.4 ENSMUSG00000047368 ENSMUST00000236549 Abhd17b protein_coding Interval_131015 chr5 134560172 134561073 + 0 NA promoter-TSS (ENSMUSG00000085957.4) protein_coding-promoter-TSS (ENSMUSG00000085957.4) -451 ENSMUSG00000085957.4 ENSMUSG00000085957 ENSMUST00000149604 Syna protein_coding Interval_131160 chr5 135488684 135489882 + 0 NA promoter-TSS (ENSMUSG00000039959.13) protein_coding-promoter-TSS (ENSMUSG00000039959.13) -15864 ENSMUSG00000106758.1 ENSMUSG00000106758 ENSMUST00000201839 Gm42731 TEC Interval_164386 chr9 36626390 36626944 + 0 NA Intergenic Intergenic 16709 ENSMUSG00000070313.8 ENSMUSG00000070313 ENSMUST00000184901 Pate14 protein_coding Interval_96196 chr2 120476200 120476506 + 0 NA promoter-TSS (ENSMUSG00000079110.12) protein_coding-promoter-TSS (ENSMUSG00000079110.12) 12700 ENSMUSG00000079110.12 ENSMUSG00000079110 ENSMUST00000151342 Capn3 protein_coding Interval_30039 chr11 88842475 88844178 + 0 NA intron (ENSMUSG00000018428.15, intron 3 of 6) protein_coding-intron (ENSMUSG00000018428.15, intron 2 of 10) -1786 ENSMUSG00000018428.15 ENSMUSG00000018428 ENSMUST00000153787 Akap1 protein_coding Interval_139036 chr6 94451979 94452219 + 0 NA Intergenic Intergenic 32299 ENSMUSG00000107781.1 ENSMUSG00000107781 ENSMUST00000203041 Gm44315 processed_pseudogene Interval_172565 chrX 36816520 36817700 + 0 NA TTS (ENSMUSG00000084990.1) antisense-TTS (ENSMUSG00000084990.1) 2339 ENSMUSG00000084990.1 ENSMUSG00000084990 ENSMUST00000154993 Gm14549 antisense Interval_145256 chr7 30986976 30987177 + 0 NA intron (ENSMUSG00000046826.7, intron 1 of 1) protein_coding-intron (ENSMUSG00000046826.7, intron 1 of 1) 13286 ENSMUSG00000046826.7 ENSMUSG00000046826 ENSMUST00000128384 Fam187b protein_coding Interval_64396 chr16 11087298 11087731 + 0 NA promoter-TSS (ENSMUSG00000022498.16) protein_coding-promoter-TSS (ENSMUSG00000022498.16) -21392 ENSMUSG00000022500.15 ENSMUSG00000022500 ENSMUST00000230709 Litaf protein_coding Interval_34319 chr12 3364724 3366422 + 0 NA exon (ENSMUSG00000020668.10, exon 1 of 8) protein_coding-exon (ENSMUSG00000020668.10, exon 1 of 8) 441 ENSMUSG00000020668.10 ENSMUSG00000020668 ENSMUST00000217891 Kif3c protein_coding Interval_130721 chr5 129983099 129983323 + 0 NA TTS (ENSMUSG00000066735.8) protein_coding-TTS (ENSMUSG00000066735.8) 6217 ENSMUSG00000066735.8 ENSMUSG00000066735 ENSMUST00000202486 Vkorc1l1 protein_coding Interval_50242 chr14 11119929 11121124 + 0 NA intron (ENSMUSG00000060579.13, intron 1 of 7) protein_coding-intron (ENSMUSG00000060579.13, intron 2 of 9) -41664 ENSMUSG00000089785.2 ENSMUSG00000089785 ENSMUST00000162199 Slc25a5-ps transcribed_processed_pseudogene Interval_68703 chr16 84819732 84820416 + 0 NA intron (ENSMUSG00000053062.16, intron 8 of 9) protein_coding-intron (ENSMUSG00000053062.16, intron 8 of 9) 1977 ENSMUSG00000088249.1 ENSMUSG00000088249 ENSMUST00000157624 Gm25908 rRNA Interval_74758 chr17 56350486 56351305 + 0 NA intron (ENSMUSG00000024201.12, intron 2 of 5) protein_coding-intron (ENSMUSG00000024201.12, intron 1 of 22) -42622 ENSMUSG00000024201.12 ENSMUSG00000024201 ENSMUST00000141507 Kdm4b protein_coding Interval_171468 chr9 118571145 118572283 + 0 NA exon (ENSMUSG00000110627.1, exon 1 of 1) processed_pseudogene-exon (ENSMUSG00000110627.1, exon 1 of 1) 557 ENSMUSG00000110627.1 ENSMUSG00000110627 ENSMUST00000212692 Gm18935 processed_pseudogene Interval_79646 chr18 34231304 34232183 + 0 NA intron (ENSMUSG00000005871.15, intron 1 of 13) protein_coding-intron (ENSMUSG00000005871.15, intron 1 of 15) 10819 ENSMUSG00000005871.15 ENSMUSG00000005871 ENSMUST00000167136 Apc protein_coding Interval_119647 chr4 138980678 138981573 + 0 NA intron (ENSMUSG00000041143.16, intron 2 of 4) protein_coding-intron (ENSMUSG00000041143.16, intron 1 of 15) 8216 ENSMUSG00000041143.16 ENSMUSG00000041143 ENSMUST00000124835 Tmco4 protein_coding Interval_12312 chr1 191612848 191613073 + 0 NA intron (ENSMUSG00000037461.10, intron 12 of 18) protein_coding-intron (ENSMUSG00000037461.10, intron 13 of 19) 15313 ENSMUSG00000102970.1 ENSMUSG00000102970 ENSMUST00000194205 Gm37349 TEC Interval_34576 chr12 5275305 5275586 + 0 NA intron (ENSMUSG00000020627.10, intron 1 of 11) protein_coding-intron (ENSMUSG00000020627.10, intron 2 of 13) 15936 ENSMUSG00000020627.10 ENSMUSG00000020627 ENSMUST00000218384 Klhl29 protein_coding Interval_165971 chr9 55091941 55092187 + 0 NA Intergenic Intergenic 3306 ENSMUSG00000110793.1 ENSMUSG00000110793 ENSMUST00000216059 Gm7395 processed_pseudogene Interval_70526 chr17 11536498 11536841 + 0 NA intron (ENSMUSG00000023826.16, intron 5 of 10) protein_coding-intron (ENSMUSG00000023826.16, intron 6 of 6) 9129 ENSMUSG00000099618.1 ENSMUSG00000099618 ENSMUST00000185957 Gm28118 processed_pseudogene Interval_79769 chr18 35033873 35034710 + 0 NA intron (ENSMUSG00000118380.1, intron 3 of 3) processed_transcript-intron (ENSMUSG00000118380.1, intron 4 of 5) 51321 ENSMUSG00000118380.1 ENSMUSG00000118380 ENSMUST00000238090 Gm36037 processed_transcript Interval_25472 chr11 48806584 48808126 + 0 NA TTS (ENSMUSG00000020372.15) protein_coding-TTS (ENSMUSG00000020372.15) 4216 ENSMUSG00000064780.1 ENSMUSG00000064780 ENSMUST00000082846 Snord95 snoRNA Interval_37282 chr12 64752653 64753794 + 0 NA Intergenic Intergenic 16821 ENSMUSG00000077703.1 ENSMUSG00000077703 ENSMUST00000104515 Gm24066 snoRNA Interval_134207 chr6 22874741 22876266 + 0 NA promoter-TSS (ENSMUSG00000068748.7) protein_coding-promoter-TSS (ENSMUSG00000068748.7) -219 ENSMUSG00000068748.7 ENSMUSG00000068748 ENSMUST00000200769 Ptprz1 protein_coding Interval_152219 chr7 130719613 130720527 + 0 NA intron (ENSMUSG00000030852.18, intron 2 of 6) protein_coding-intron (ENSMUSG00000030852.18, intron 2 of 17) 6393 ENSMUSG00000030852.18 ENSMUSG00000030852 ENSMUST00000207230 Tacc2 protein_coding Interval_102712 chr3 30526381 30526687 + 0 NA intron (ENSMUSG00000027684.16, intron 2 of 8) protein_coding-intron (ENSMUSG00000027684.16, intron 2 of 8) -22721 ENSMUSG00000103738.1 ENSMUSG00000103738 ENSMUST00000195290 Gm37652 TEC Interval_8278 chr1 136906473 136906873 + 0 NA intron (ENSMUSG00000026398.14, intron 6 of 8) protein_coding-intron (ENSMUSG00000026398.14, intron 6 of 8) 42500 ENSMUSG00000026398.14 ENSMUSG00000026398 ENSMUST00000195428 Nr5a2 protein_coding Interval_63782 chr15 103382596 103384020 + 0 NA Intergenic Intergenic 5237 ENSMUSG00000104327.1 ENSMUSG00000104327 ENSMUST00000193409 Gm37322 TEC Interval_167275 chr9 66966235 66966455 + 0 NA intron (ENSMUSG00000032370.8, intron 4 of 4) protein_coding-intron (ENSMUSG00000032370.8, intron 5 of 5) 9075 ENSMUSG00000032370.8 ENSMUSG00000032370 ENSMUST00000034929 Lactb protein_coding Interval_119221 chr4 136285202 136286461 + 0 NA promoter-TSS (ENSMUSG00000051351.14) protein_coding-promoter-TSS (ENSMUSG00000051351.14) 1148 ENSMUSG00000051351.14 ENSMUSG00000051351 ENSMUST00000130658 Zfp46 protein_coding Interval_72389 chr17 29539061 29539457 + 0 NA intron (ENSMUSG00000079580.9, intron 1 of 1) protein_coding-intron (ENSMUSG00000079580.9, intron 2 of 2) 10379 ENSMUSG00000091614.2 ENSMUSG00000091614 ENSMUST00000168877 Gm17657 protein_coding Interval_112347 chr4 40734844 40736068 + 0 NA TTS (ENSMUSG00000028410.13) protein_coding-TTS (ENSMUSG00000028410.13) 12534 ENSMUSG00000028410.13 ENSMUSG00000028410 ENSMUST00000148976 Dnaja1 protein_coding Interval_45460 chr13 55265911 55266148 + 0 NA intron (ENSMUSG00000021488.8, intron 6 of 20) protein_coding-intron (ENSMUSG00000021488.8, intron 8 of 22) -11628 ENSMUSG00000114359.1 ENSMUSG00000114359 ENSMUST00000224833 Gm47816 processed_pseudogene Interval_150660 chr7 113149761 113150728 + 0 NA Intergenic Intergenic -8229 ENSMUSG00000110009.1 ENSMUSG00000110009 ENSMUST00000210408 4930543E12Rik lincRNA Interval_157176 chr8 66985459 66985976 + 0 NA Intergenic Intergenic -66939 ENSMUSG00000077485.1 ENSMUSG00000077485 ENSMUST00000104297 Gm25275 snoRNA Interval_21985 chr11 5569454 5570481 + 0 NA exon (ENSMUSG00000020481.15, exon 1 of 7) protein_coding-exon (ENSMUSG00000020481.15, exon 1 of 7) -4116 ENSMUSG00000020481.15 ENSMUSG00000020481 ENSMUST00000137933 Ankrd36 protein_coding Interval_46641 chr13 67857019 67858061 + 0 NA Intergenic Intergenic -5786 ENSMUSG00000064063.6 ENSMUSG00000064063 ENSMUST00000078471 BC048507 protein_coding Interval_153757 chr8 7040554 7040988 + 0 NA exon (ENSMUSG00000108852.1, exon 1 of 1) processed_pseudogene-exon (ENSMUSG00000108852.1, exon 1 of 1) 614 ENSMUSG00000108852.1 ENSMUSG00000108852 ENSMUST00000208436 Gm44911 processed_pseudogene Interval_92092 chr2 53138687 53138944 + 0 NA TTS (ENSMUSG00000061136.16) protein_coding-TTS (ENSMUSG00000061136.16) 52372 ENSMUSG00000061136.16 ENSMUSG00000061136 ENSMUST00000132031 Prpf40a protein_coding Interval_133589 chr6 7246286 7247007 + 0 NA Intergenic Intergenic 52374 ENSMUSG00000099178.1 ENSMUSG00000099178 ENSMUST00000183839 Gm8669 processed_pseudogene Interval_135526 chr6 39990494 39992127 + 0 NA intron (ENSMUSG00000057716.7, intron 1 of 3) protein_coding-intron (ENSMUSG00000057716.7, intron 1 of 3) -35584 ENSMUSG00000103331.1 ENSMUSG00000103331 ENSMUST00000194958 Gm37995 TEC Interval_17699 chr10 79626324 79626766 + 0 NA intron (ENSMUSG00000020312.12, intron 7 of 12) protein_coding-intron (ENSMUSG00000020312.12, intron 7 of 12) -3821 ENSMUSG00000020312.12 ENSMUSG00000020312 ENSMUST00000166450 Shc2 protein_coding Interval_108562 chr3 129032777 129032974 + 0 NA Intergenic Intergenic 37669 ENSMUSG00000099640.1 ENSMUSG00000099640 ENSMUST00000188986 Gm28543 lincRNA Interval_39625 chr12 91645330 91645793 + 0 NA intron (ENSMUSG00000020961.15, intron 4 of 4) protein_coding-intron (ENSMUSG00000020961.15, intron 5 of 6) -27884 ENSMUSG00000113943.1 ENSMUSG00000113943 ENSMUST00000222304 Gm47804 lincRNA Interval_144830 chr7 28496242 28497199 + 0 NA promoter-TSS (ENSMUSG00000099417.1) transcribed_processed_pseudogene-promoter-TSS (ENSMUSG00000099417.1) 4170 ENSMUSG00000099417.1 ENSMUSG00000099417 ENSMUST00000186274 1700028B04Rik transcribed_processed_pseudogene Interval_90937 chr2 33592931 33593292 + 0 NA intron (ENSMUSG00000038765.14, intron 2 of 7) protein_coding-intron (ENSMUSG00000038765.14, intron 2 of 7) -21287 ENSMUSG00000104403.1 ENSMUSG00000104403 ENSMUST00000193312 Gm38011 TEC Interval_21527 chr10 129229600 129230114 + 0 NA Intergenic Intergenic -6347 ENSMUSG00000096229.3 ENSMUSG00000096229 ENSMUST00000097164 Olfr774 protein_coding Interval_107675 chr3 110105713 110106450 + 0 NA intron (ENSMUSG00000059857.15, intron 1 of 4) protein_coding-intron (ENSMUSG00000059857.15, intron 1 of 6) 138547 ENSMUSG00000105639.1 ENSMUSG00000105639 ENSMUST00000198691 Gm42516 TEC Interval_138070 chr6 84962853 84963523 + 0 NA intron (ENSMUSG00000033769.16, intron 6 of 6) protein_coding-intron (ENSMUSG00000033769.16, intron 6 of 16) 42065 ENSMUSG00000108012.1 ENSMUSG00000108012 ENSMUST00000204154 Gm44012 antisense Interval_162268 chr8 126556888 126559334 + 0 NA Intergenic Intergenic -8859 ENSMUSG00000097060.1 ENSMUSG00000097060 ENSMUST00000181773 Gm26759 antisense Interval_59606 chr15 55945347 55945787 + 0 NA intron (ENSMUSG00000115200.1, intron 2 of 3) lincRNA-intron (ENSMUSG00000115200.1, intron 2 of 3) 14865 ENSMUSG00000115150.1 ENSMUSG00000115150 ENSMUST00000226930 Gm10370 TEC Interval_12360 chr1 192525553 192526306 + 0 NA intron (ENSMUSG00000037375.16, intron 11 of 11) protein_coding-intron (ENSMUSG00000037375.16, intron 11 of 11) 91189 ENSMUSG00000058248.12 ENSMUSG00000058248 ENSMUST00000151152 Kcnh1 protein_coding Interval_119019 chr4 135034370 135034870 + 0 NA Intergenic Intergenic 85827 ENSMUSG00000086884.1 ENSMUSG00000086884 ENSMUST00000146152 Gm16225 lincRNA Interval_157305 chr8 69163958 69165661 + 0 NA TTS (ENSMUSG00000036306.13) protein_coding-TTS (ENSMUSG00000036306.13) 17421 ENSMUSG00000036306.13 ENSMUSG00000036306 ENSMUST00000184961 Lzts1 protein_coding Interval_67528 chr16 50360619 50361003 + 0 NA intron (ENSMUSG00000022641.15, intron 2 of 16) protein_coding-intron (ENSMUSG00000022641.15, intron 2 of 15) 71498 ENSMUSG00000022641.15 ENSMUSG00000022641 ENSMUST00000130210 Bbx protein_coding Interval_133459 chr6 5324870 5325726 + 0 NA Intergenic Intergenic -44964 ENSMUSG00000032667.17 ENSMUSG00000032667 ENSMUST00000203882 Pon2 protein_coding Interval_168562 chr9 83596074 83596498 + 0 NA intron (ENSMUSG00000032261.16, intron 3 of 3) protein_coding-intron (ENSMUSG00000032261.16, intron 3 of 3) -22997 ENSMUSG00000110950.1 ENSMUSG00000110950 ENSMUST00000213703 Gm39384 lincRNA Interval_134027 chr6 17829433 17830754 + 0 NA intron (ENSMUSG00000029534.17, intron 3 of 16) protein_coding-intron (ENSMUSG00000029534.17, intron 2 of 14) 5092 ENSMUSG00000097700.1 ENSMUSG00000097700 ENSMUST00000181312 Gm26738 antisense Interval_13838 chr10 23671349 23671748 + 0 NA Intergenic Intergenic -49400 ENSMUSG00000112868.1 ENSMUSG00000112868 ENSMUST00000219522 4930520K02Rik lincRNA Interval_5012 chr1 84198662 84199878 + 0 NA intron (ENSMUSG00000045658.16, intron 2 of 4) protein_coding-intron (ENSMUSG00000045658.16, intron 1 of 2) 19691 ENSMUSG00000098851.1 ENSMUSG00000098851 ENSMUST00000183596 Mir6353 miRNA Interval_13584 chr10 19957297 19957784 + 0 NA intron (ENSMUSG00000071369.11, intron 1 of 3) protein_coding-intron (ENSMUSG00000071369.11, intron 1 of 29) -49889 ENSMUSG00000020003.16 ENSMUSG00000020003 ENSMUST00000214951 Pex7 protein_coding Interval_140747 chr6 121013533 121013918 + 0 NA intron (ENSMUSG00000051586.17, intron 7 of 10) protein_coding-intron (ENSMUSG00000051586.17, intron 16 of 17) -50871 ENSMUSG00000097011.2 ENSMUSG00000097011 ENSMUST00000203697 Gm4651 processed_transcript Interval_82327 chr18 70705630 70706128 + 0 NA intron (ENSMUSG00000118309.1, intron 2 of 3) lincRNA-intron (ENSMUSG00000118309.1, intron 2 of 3) 618 ENSMUSG00000118309.1 ENSMUSG00000118309 ENSMUST00000237754 Gm50261 lincRNA Interval_3620 chr1 60047302 60047845 + 0 NA Intergenic Intergenic -4451 ENSMUSG00000026018.12 ENSMUSG00000026018 ENSMUST00000186970 Ica1l protein_coding Interval_155874 chr8 40533725 40534037 + 0 NA intron (ENSMUSG00000031600.11, intron 4 of 7) protein_coding-intron (ENSMUSG00000031600.11, intron 4 of 11) -9543 ENSMUSG00000031600.11 ENSMUSG00000031600 ENSMUST00000238628 Vps37a protein_coding Interval_1104 chr1 15761026 15761778 + 0 NA promoter-TSS (ENSMUSG00000101652.1) processed_pseudogene-promoter-TSS (ENSMUSG00000101652.1) 641 ENSMUSG00000100814.1 ENSMUSG00000100814 ENSMUST00000188400 Gm28669 processed_pseudogene Interval_166975 chr9 64272193 64272893 + 0 NA Intergenic Intergenic -9060 ENSMUSG00000032397.7 ENSMUSG00000032397 ENSMUST00000034964 Tipin protein_coding Interval_19286 chr10 96105114 96105528 + 0 NA Intergenic Intergenic -9316 ENSMUSG00000117008.1 ENSMUSG00000117008 ENSMUST00000233655 Gm49817 unitary_pseudogene Interval_22767 chr11 15088317 15090315 + 0 NA Intergenic Intergenic 40158 ENSMUSG00000084183.1 ENSMUSG00000084183 ENSMUST00000121361 Gm12009 processed_pseudogene Interval_94454 chr2 91328123 91328599 + 0 NA intron (ENSMUSG00000040591.18, intron 3 of 3) protein_coding-intron (ENSMUSG00000040591.18, intron 3 of 8) 15828 ENSMUSG00000081248.1 ENSMUSG00000081248 ENSMUST00000120422 Gm13787 processed_pseudogene Interval_49325 chr13 110842453 110843029 + 0 NA TTS (ENSMUSG00000114587.1) processed_pseudogene-TTS (ENSMUSG00000114587.1) 380 ENSMUSG00000114587.1 ENSMUSG00000114587 ENSMUST00000225026 Gm48533 processed_pseudogene Interval_61614 chr15 82962541 82964573 + 0 NA promoter-TSS (ENSMUSG00000041852.15) protein_coding-promoter-TSS (ENSMUSG00000041852.15) -4261 ENSMUSG00000092751.1 ENSMUSG00000092751 ENSMUST00000175010 Mir3080 miRNA Interval_170354 chr9 107357371 107358091 + 0 NA Intergenic Intergenic -3745 ENSMUSG00000102144.1 ENSMUSG00000102144 ENSMUST00000194547 4930429P21Rik lincRNA Interval_79055 chr18 24195264 24195490 + 0 NA Intergenic Intergenic -37220 ENSMUSG00000000420.15 ENSMUSG00000000420 ENSMUST00000170191 Galnt1 protein_coding Interval_149878 chr7 102178780 102178980 + 0 NA exon (ENSMUSG00000063550.8, exon 8 of 8) protein_coding-exon (ENSMUSG00000063550.8, exon 8 of 8) 4685 ENSMUSG00000063550.8 ENSMUSG00000063550 ENSMUST00000211375 Nup98 protein_coding Interval_63399 chr15 100817275 100817628 + 0 NA exon (ENSMUSG00000023032.12, exon 25 of 25) protein_coding-exon (ENSMUSG00000023032.12, exon 25 of 25) 14703 ENSMUSG00000023032.12 ENSMUSG00000023032 ENSMUST00000162744 Slc4a8 protein_coding Interval_101857 chr3 10159280 10159778 + 0 NA Intergenic Intergenic 24400 ENSMUSG00000052468.7 ENSMUSG00000052468 ENSMUST00000029034 Pmp2 protein_coding Interval_69806 chr16 96723493 96723929 + 0 NA intron (ENSMUSG00000117000.1, intron 1 of 1) protein_coding-intron (ENSMUSG00000050272.10, intron 11 of 32) 199 ENSMUSG00000117000.1 ENSMUSG00000117000 ENSMUST00000233368 Gm32509 processed_transcript Interval_113067 chr4 47468026 47468947 + 0 NA intron (ENSMUSG00000039740.6, intron 1 of 2) protein_coding-intron (ENSMUSG00000039740.6, intron 1 of 2) 5491 ENSMUSG00000039740.6 ENSMUSG00000039740 ENSMUST00000143104 Alg2 protein_coding Interval_53001 chr14 53132262 53133029 + 0 NA promoter-TSS (ENSMUSG00000076802.3) TR_V_gene-promoter-TSS (ENSMUSG00000076802.3) -34 ENSMUSG00000076802.3 ENSMUSG00000076802 ENSMUST00000103613 Trav6n-6 TR_V_gene Interval_135293 chr6 38107128 38107763 + 0 NA intron (ENSMUSG00000038600.12, intron 1 of 21) protein_coding-intron (ENSMUSG00000038600.12, intron 1 of 20) -1810 ENSMUSG00000029829.4 ENSMUSG00000029829 ENSMUST00000031851 Tmem213 protein_coding Interval_112374 chr4 40907846 40909154 + 0 NA Intergenic Intergenic 4855 ENSMUSG00000081309.3 ENSMUSG00000081309 ENSMUST00000117674 Gm12397 processed_pseudogene Interval_128245 chr5 112001512 112002714 + 0 NA Intergenic Intergenic -57878 ENSMUSG00000106060.1 ENSMUSG00000106060 ENSMUST00000197648 Gm42488 lincRNA Interval_118273 chr4 129970113 129970780 + 0 NA Intergenic Intergenic 10072 ENSMUSG00000085389.7 ENSMUSG00000085389 ENSMUST00000139884 1700003M07Rik lincRNA Interval_77054 chr17 86111949 86112175 + 0 NA intron (ENSMUSG00000024135.10, intron 10 of 20) protein_coding-intron (ENSMUSG00000024135.10, intron 10 of 20) -63513 ENSMUSG00000117546.1 ENSMUSG00000117546 ENSMUST00000234087 AC154542.1 TEC Interval_92704 chr2 63277908 63278127 + 0 NA Intergenic Intergenic -93755 ENSMUSG00000059742.10 ENSMUSG00000059742 ENSMUST00000131799 Kcnh7 protein_coding Interval_35369 chr12 21116993 21117370 + 0 NA intron (ENSMUSG00000052632.16, intron 1 of 27) protein_coding-intron (ENSMUSG00000052632.16, intron 1 of 26) 74222 ENSMUSG00000092229.3 ENSMUSG00000092229 ENSMUST00000174304 Gm5977 transcribed_unprocessed_pseudogene Interval_9937 chr1 164248004 164249731 + 0 NA promoter-TSS (ENSMUSG00000040918.12) protein_coding-promoter-TSS (ENSMUSG00000040918.12) -386 ENSMUSG00000040918.12 ENSMUSG00000040918 ENSMUST00000160773 Slc19a2 protein_coding Interval_169632 chr9 99563575 99564079 + 0 NA intron (ENSMUSG00000032468.11, intron 1 of 1) protein_coding-intron (ENSMUSG00000032468.11, intron 1 of 21) 4836 ENSMUSG00000032468.11 ENSMUSG00000032468 ENSMUST00000191370 Armc8 protein_coding Interval_165015 chr9 43919973 43920809 + 0 NA Intergenic Intergenic -14389 ENSMUSG00000088044.1 ENSMUSG00000088044 ENSMUST00000157419 Gm23326 snRNA Interval_32036 chr11 104600361 104601416 + 0 NA Intergenic Intergenic 18849 ENSMUSG00000061086.12 ENSMUSG00000061086 ENSMUST00000136244 Myl4 protein_coding Interval_98331 chr2 151559111 151559316 + 0 NA intron (ENSMUSG00000032966.14, intron 2 of 3) protein_coding-intron (ENSMUSG00000032966.14, intron 3 of 4) -13409 ENSMUSG00000027456.8 ENSMUSG00000027456 ENSMUST00000028950 Sdcbp2 protein_coding Interval_31047 chr11 97857974 97858320 + 0 NA intron (ENSMUSG00000070336.3, intron 7 of 10) protein_coding-intron (ENSMUSG00000070336.3, intron 7 of 10) -2595 ENSMUSG00000070336.3 ENSMUSG00000070336 ENSMUST00000093939 Fbxo47 protein_coding Interval_172555 chrX 36743307 36745483 + 0 NA intron (ENSMUSG00000037636.6, intron 1 of 2) protein_coding-intron (ENSMUSG00000037636.6, intron 1 of 4) 684 ENSMUSG00000037636.6 ENSMUSG00000037636 ENSMUST00000133699 Slc25a43 protein_coding Interval_134614 chr6 29987445 29988803 + 0 NA promoter-TSS (ENSMUSG00000095989.1) miRNA-promoter-TSS (ENSMUSG00000095989.1) -264 ENSMUSG00000095989.1 ENSMUSG00000095989 ENSMUST00000178068 Gm23049 miRNA Interval_101635 chr3 8308201 8308789 + 0 NA Intergenic Intergenic -19036 ENSMUSG00000103921.1 ENSMUSG00000103921 ENSMUST00000195307 Gm5841 processed_pseudogene Interval_51450 chr14 27653856 27654146 + 0 NA TTS (ENSMUSG00000040640.11) protein_coding-TTS (ENSMUSG00000040640.11) -60376 ENSMUSG00000114653.1 ENSMUSG00000114653 ENSMUST00000224481 Gm18398 processed_pseudogene Interval_101563 chr3 6135520 6137799 + 0 NA Intergenic Intergenic 1585 ENSMUSG00000103848.1 ENSMUSG00000103848 ENSMUST00000192818 Gm17934 processed_pseudogene Interval_117214 chr4 120649209 120650359 + 0 NA Intergenic Intergenic -1647 ENSMUSG00000110389.1 ENSMUSG00000110389 ENSMUST00000209367 Gm45579 lincRNA Interval_172500 chrX 21701433 21702004 + 0 NA Intergenic Intergenic -13178 ENSMUSG00000031089.7 ENSMUSG00000031089 ENSMUST00000033414 Slc6a14 protein_coding Interval_33209 chr11 115235583 115236453 + 0 NA intron (ENSMUSG00000045980.13, intron 9 of 9) protein_coding-intron (ENSMUSG00000045980.13, intron 9 of 9) -17260 ENSMUSG00000089544.1 ENSMUSG00000089544 ENSMUST00000158919 Gm25837 miRNA Interval_47204 chr13 78016930 78017129 + 0 NA intron (ENSMUSG00000064138.14, intron 10 of 10) protein_coding-intron (ENSMUSG00000064138.14, intron 9 of 9) -7873 ENSMUSG00000093668.3 ENSMUSG00000093668 ENSMUST00000175955 Pou5f2 protein_coding Interval_3441 chr1 58378263 58378703 + 0 NA intron (ENSMUSG00000079554.2, intron 35 of 35) protein_coding-intron (ENSMUSG00000079554.2, intron 35 of 35) 7651 ENSMUSG00000103839.1 ENSMUSG00000103839 ENSMUST00000194925 Gm37607 TEC Interval_38207 chr12 76361959 76362779 + 0 NA intron (ENSMUSG00000056459.14, intron 1 of 2) protein_coding-intron (ENSMUSG00000056459.14, intron 1 of 2) 7095 ENSMUSG00000056459.14 ENSMUSG00000056459 ENSMUST00000176967 Zbtb25 protein_coding Interval_30996 chr11 97628369 97630041 + 0 NA exon (ENSMUSG00000043439.5, exon 1 of 1) protein_coding-exon (ENSMUSG00000043439.5, exon 1 of 1) 497 ENSMUSG00000043439.5 ENSMUSG00000043439 ENSMUST00000052281 Epop protein_coding Interval_63162 chr15 99469046 99469529 + 0 NA TTS (ENSMUSG00000037525.5) protein_coding-TTS (ENSMUSG00000037525.5) 5421 ENSMUSG00000037525.5 ENSMUSG00000037525 ENSMUST00000229827 Bcdin3d protein_coding Interval_84600 chr19 14240619 14240873 + 0 NA Intergenic Intergenic -222375 ENSMUSG00000098074.1 ENSMUSG00000098074 ENSMUST00000182766 Gm26993 processed_pseudogene Interval_42434 chr13 13516271 13517490 + 0 NA Intergenic Intergenic 2142 ENSMUSG00000114068.1 ENSMUSG00000114068 ENSMUST00000221249 Gm48783 TEC Interval_26727 chr11 60033743 60034576 + 0 NA intron (ENSMUSG00000000301.16, intron 1 of 6) protein_coding-intron (ENSMUSG00000000301.16, intron 1 of 6) -62649 ENSMUSG00000000301.16 ENSMUSG00000000301 ENSMUST00000133028 Pemt protein_coding Interval_85796 chr19 31722271 31722861 + 0 NA intron (ENSMUSG00000052920.16, intron 1 of 17) protein_coding-intron (ENSMUSG00000052920.16, intron 1 of 17) -146215 ENSMUSG00000052595.8 ENSMUSG00000052595 ENSMUST00000225165 A1cf protein_coding Interval_132947 chr5 148909017 148909943 + 0 NA intron (ENSMUSG00000041298.15, intron 3 of 3) protein_coding-intron (ENSMUSG00000041298.15, intron 3 of 10) -17208 ENSMUSG00000106810.1 ENSMUSG00000106810 ENSMUST00000202134 Gm43600 unprocessed_pseudogene Interval_87434 chr19 50439561 50440855 + 0 NA intron (ENSMUSG00000043531.16, intron 2 of 25) protein_coding-intron (ENSMUSG00000043531.16, intron 3 of 26) -237198 ENSMUSG00000097446.1 ENSMUSG00000097446 ENSMUST00000180848 Gm26629 antisense Interval_37133 chr12 58802210 58802842 + 0 NA Intergenic Intergenic -11357 ENSMUSG00000112785.1 ENSMUSG00000112785 ENSMUST00000220177 Gm47645 lincRNA Interval_35687 chr12 27500664 27500863 + 0 NA Intergenic Intergenic -97438 ENSMUSG00000113421.1 ENSMUSG00000113421 ENSMUST00000220893 Gm4166 lincRNA Interval_168271 chr9 78358040 78358640 + 0 NA Intergenic Intergenic 9837 ENSMUSG00000060461.5 ENSMUSG00000060461 ENSMUST00000071991 Dppa5a protein_coding Interval_107309 chr3 105695476 105696881 + 0 NA Intergenic Intergenic -8726 ENSMUSG00000027905.15 ENSMUSG00000027905 ENSMUST00000132008 Ddx20 protein_coding Interval_64219 chr16 9264731 9265450 + 0 NA Intergenic Intergenic 106320 ENSMUSG00000116123.1 ENSMUSG00000116123 ENSMUST00000229655 Gm49451 lincRNA Interval_31790 chr11 102880504 102881812 + 0 NA promoter-TSS (ENSMUSG00000020929.14) protein_coding-promoter-TSS (ENSMUSG00000020929.14) -87 ENSMUSG00000020930.9 ENSMUSG00000020930 ENSMUST00000159834 Ccdc103 protein_coding Interval_28159 chr11 73310737 73311527 + 0 NA intron (ENSMUSG00000020774.9, intron 5 of 6) protein_coding-intron (ENSMUSG00000020774.9, intron 4 of 5) 18464 ENSMUSG00000020774.9 ENSMUSG00000020774 ENSMUST00000141898 Aspa protein_coding Interval_116836 chr4 117587403 117587614 + 0 NA intron (ENSMUSG00000033423.16, intron 1 of 3) protein_coding-intron (ENSMUSG00000033423.16, intron 4 of 8) 17374 ENSMUSG00000087807.1 ENSMUSG00000087807 ENSMUST00000157182 Gm25559 miRNA Interval_44150 chr13 41264302 41264537 + 0 NA intron (ENSMUSG00000091264.3, intron 1 of 1) protein_coding-intron (ENSMUSG00000091264.3, intron 1 of 1) 9558 ENSMUSG00000090853.1 ENSMUSG00000090853 ENSMUST00000163881 Gm17364 protein_coding Interval_153811 chr8 8871709 8872812 + 0 NA Intergenic Intergenic 60439 ENSMUSG00000109346.1 ENSMUSG00000109346 ENSMUST00000209045 Gm44515 lincRNA Interval_94800 chr2 94424244 94424579 + 0 NA intron (ENSMUSG00000027193.12, intron 6 of 7) protein_coding-intron (ENSMUSG00000027193.12, intron 7 of 13) 13725 ENSMUSG00000027193.12 ENSMUSG00000027193 ENSMUST00000150930 Api5 protein_coding Interval_59313 chr15 51345997 51346499 + 0 NA intron (ENSMUSG00000115654.1, intron 1 of 5) lincRNA-intron (ENSMUSG00000115654.1, intron 1 of 5) 49362 ENSMUSG00000115654.1 ENSMUSG00000115654 ENSMUST00000226948 Gm19303 lincRNA Interval_90340 chr2 29858850 29859352 + 0 NA Intergenic Intergenic 11216 ENSMUSG00000039798.2 ENSMUSG00000039798 ENSMUST00000047607 2600006K01Rik antisense Interval_155745 chr8 36639433 36641119 + 0 NA intron (ENSMUSG00000031523.16, intron 5 of 17) protein_coding-intron (ENSMUSG00000031523.16, intron 1 of 13) 151085 ENSMUSG00000039620.17 ENSMUSG00000039620 ENSMUST00000125492 Trmt9b protein_coding Interval_39196 chr12 85752844 85755104 + 0 NA intron (ENSMUSG00000034258.4, intron 1 of 9) protein_coding-intron (ENSMUSG00000034258.4, intron 1 of 9) -20856 ENSMUSG00000034258.4 ENSMUSG00000034258 ENSMUST00000221585 Flvcr2 protein_coding Interval_116783 chr4 117278701 117279265 + 0 NA intron (ENSMUSG00000028677.19, intron 3 of 3) protein_coding-intron (ENSMUSG00000028677.19, intron 8 of 14) -5200 ENSMUSG00000028677.19 ENSMUSG00000028677 ENSMUST00000123222 Rnf220 protein_coding Interval_1025 chr1 14185591 14185898 + 0 NA intron (ENSMUSG00000025932.14, intron 11 of 16) protein_coding-intron (ENSMUSG00000025932.14, intron 12 of 17) 3166 ENSMUSG00000095853.1 ENSMUSG00000095853 ENSMUST00000179783 Gm22616 miRNA Interval_124048 chr5 37823544 37824873 + 0 NA exon (ENSMUSG00000048450.10, exon 1 of 2) protein_coding-exon (ENSMUSG00000048450.10, exon 1 of 2) 374 ENSMUSG00000048450.10 ENSMUSG00000048450 ENSMUST00000183013 Msx1 protein_coding Interval_145177 chr7 30475852 30476576 + 0 NA intron (ENSMUSG00000006649.17, intron 22 of 28) protein_coding-intron (ENSMUSG00000006649.17, intron 22 of 29) -1651 ENSMUSG00000006649.17 ENSMUSG00000006649 ENSMUST00000131004 Nphs1 protein_coding Interval_72242 chr17 28774474 28775344 + 0 NA intron (ENSMUSG00000004864.13, intron 3 of 11) protein_coding-intron (ENSMUSG00000004864.13, intron 3 of 9) 5612 ENSMUSG00000004864.13 ENSMUSG00000004864 ENSMUST00000004986 Mapk13 protein_coding Interval_100644 chr2 170689596 170690119 + 0 NA Intergenic Intergenic -27392 ENSMUSG00000085158.1 ENSMUSG00000085158 ENSMUST00000147141 Gm14264 lincRNA Interval_43716 chr13 35754221 35754769 + 0 NA intron (ENSMUSG00000059288.14, intron 1 of 6) protein_coding-intron (ENSMUSG00000059288.14, intron 3 of 9) -8317 ENSMUSG00000059288.14 ENSMUSG00000059288 ENSMUST00000226071 Cdyl protein_coding Interval_118548 chr4 132432546 132433538 + 0 NA Intergenic Intergenic -8992 ENSMUSG00000064739.1 ENSMUSG00000064739 ENSMUST00000082805 Gm23055 snRNA Interval_123540 chr5 33349325 33350087 + 0 NA intron (ENSMUSG00000079562.7, intron 2 of 3) protein_coding-intron (ENSMUSG00000079562.7, intron 1 of 8) -12865 ENSMUSG00000079562.7 ENSMUSG00000079562 ENSMUST00000202839 Maea protein_coding Interval_54205 chr14 66224336 66224560 + 0 NA intron (ENSMUSG00000059456.13, intron 1 of 14) protein_coding-intron (ENSMUSG00000059456.13, intron 1 of 30) -10896 ENSMUSG00000059456.13 ENSMUSG00000059456 ENSMUST00000127083 Ptk2b protein_coding Interval_29850 chr11 87264131 87264655 + 0 NA intron (ENSMUSG00000046442.4, intron 1 of 3) protein_coding-intron (ENSMUSG00000046442.4, intron 1 of 6) -40280 ENSMUSG00000080976.1 ENSMUSG00000080976 ENSMUST00000118128 Gm11490 processed_pseudogene Interval_54777 chr14 74974584 74975040 + 0 NA promoter-TSS (ENSMUSG00000115019.1) lincRNA-promoter-TSS (ENSMUSG00000115019.1) -274 ENSMUSG00000115019.1 ENSMUSG00000115019 ENSMUST00000228599 Gm4278 lincRNA Interval_55699 chr14 99119807 99120270 + 0 NA intron (ENSMUSG00000022064.10, intron 5 of 13) protein_coding-intron (ENSMUSG00000022064.10, intron 5 of 17) 8361 ENSMUSG00000115071.1 ENSMUSG00000115071 ENSMUST00000226897 Gm49026 TEC Interval_117025 chr4 119079990 119080673 + 0 NA Intergenic Intergenic -11220 ENSMUSG00000066060.5 ENSMUSG00000066060 ENSMUST00000128998 Gm12866 lincRNA Interval_64047 chr16 6413140 6413534 + 0 NA intron (ENSMUSG00000008658.16, intron 1 of 14) protein_coding-intron (ENSMUSG00000008658.16, intron 1 of 14) 437752 ENSMUSG00000101481.1 ENSMUSG00000101481 ENSMUST00000190515 1700123O21Rik sense_intronic Interval_36033 chr12 33449786 33451018 + 0 NA Intergenic Intergenic 2441 ENSMUSG00000077750.1 ENSMUSG00000077750 ENSMUST00000104562 Gm23529 snoRNA Interval_106567 chr3 97300933 97301798 + 0 NA Intergenic Intergenic -3448 ENSMUSG00000038256.15 ENSMUSG00000038256 ENSMUST00000127319 Bcl9 protein_coding Interval_160490 chr8 109961540 109962687 + 0 NA promoter-TSS (ENSMUSG00000001672.14) protein_coding-promoter-TSS (ENSMUSG00000001672.14) -60 ENSMUSG00000001672.14 ENSMUSG00000001672 ENSMUST00000155052 Marveld3 protein_coding Interval_164435 chr9 37006104 37006603 + 0 NA intron (ENSMUSG00000035934.16, intron 2 of 4) protein_coding-intron (ENSMUSG00000035934.16, intron 2 of 12) -9405 ENSMUSG00000093721.1 ENSMUSG00000093721 ENSMUST00000176020 Gm3896 antisense Interval_173598 chrX 100625510 100627019 + 0 NA promoter-TSS (ENSMUSG00000015668.13) protein_coding-promoter-TSS (ENSMUSG00000015668.13) 7 ENSMUSG00000015668.13 ENSMUSG00000015668 ENSMUST00000151548 Pdzd11 protein_coding Interval_165204 chr9 45299673 45302253 + 0 NA promoter-TSS (ENSMUSG00000111075.1) processed_pseudogene-promoter-TSS (ENSMUSG00000111075.1) -999 ENSMUSG00000111075.1 ENSMUSG00000111075 ENSMUST00000214313 Gm47964 processed_pseudogene Interval_162940 chr9 13595992 13596293 + 0 NA intron (ENSMUSG00000031925.17, intron 1 of 4) protein_coding-intron (ENSMUSG00000031925.17, intron 1 of 4) -25084 ENSMUSG00000093092.1 ENSMUSG00000093092 ENSMUST00000175351 Gm22643 miRNA Interval_5117 chr1 85793130 85794652 + 0 NA promoter-TSS (ENSMUSG00000036707.16) protein_coding-promoter-TSS (ENSMUSG00000036707.16) 9178 ENSMUSG00000092932.2 ENSMUSG00000092932 ENSMUST00000175191 Gm22906 misc_RNA Interval_30394 chr11 94092579 94092892 + 0 NA exon (ENSMUSG00000020859.16, exon 9 of 10) protein_coding-exon (ENSMUSG00000020859.16, exon 9 of 10) -40767 ENSMUSG00000086003.7 ENSMUSG00000086003 ENSMUST00000125406 B230206L02Rik processed_transcript Interval_140496 chr6 118827827 118828655 + 0 NA intron (ENSMUSG00000051331.16, intron 3 of 47) protein_coding-intron (ENSMUSG00000051331.16, intron 3 of 46) -6659 ENSMUSG00000089115.1 ENSMUSG00000089115 ENSMUST00000158490 Gm25905 snRNA Interval_123705 chr5 34626765 34627228 + 0 NA intron (ENSMUSG00000029106.14, intron 5 of 6) protein_coding-intron (ENSMUSG00000029106.14, intron 13 of 15) 8529 ENSMUSG00000001082.12 ENSMUSG00000001082 ENSMUST00000124668 Mfsd10 protein_coding Interval_70117 chr17 5439877 5441092 + 0 NA promoter-TSS (ENSMUSG00000004945.15) protein_coding-promoter-TSS (ENSMUSG00000004945.15) -225 ENSMUSG00000004945.15 ENSMUSG00000004945 ENSMUST00000185896 Tmem242 protein_coding Interval_62613 chr15 95598583 95599711 + 0 NA Intergenic Intergenic 7518 ENSMUSG00000089560.1 ENSMUSG00000089560 ENSMUST00000158935 Gm24668 snRNA Interval_162200 chr8 125909478 125911557 + 0 NA promoter-TSS (ENSMUSG00000031853.5) protein_coding-promoter-TSS (ENSMUSG00000031853.5) 67 ENSMUSG00000031853.5 ENSMUSG00000031853 ENSMUST00000034316 Map3k21 protein_coding Interval_159723 chr8 99415224 99416914 + 0 NA promoter-TSS (ENSMUSG00000052479.5) lincRNA-promoter-TSS (ENSMUSG00000052479.5) 358 ENSMUSG00000036510.17 ENSMUSG00000036510 ENSMUST00000142475 Cdh8 protein_coding Interval_40523 chr12 105483456 105484310 + 0 NA intron (ENSMUSG00000094910.1, intron 1 of 1) protein_coding-intron (ENSMUSG00000094910.1, intron 1 of 1) -29597 ENSMUSG00000113535.1 ENSMUSG00000113535 ENSMUST00000223443 AU015791 lincRNA Interval_32401 chr11 107356431 107356675 + 0 NA intron (ENSMUSG00000040430.18, intron 1 of 9) protein_coding-intron (ENSMUSG00000040430.18, intron 1 of 9) 18503 ENSMUSG00000086298.1 ENSMUSG00000086298 ENSMUST00000154414 Gm11716 antisense Interval_32135 chr11 105469117 105470119 + 0 NA Intergenic Intergenic 35173 ENSMUSG00000086089.1 ENSMUSG00000086089 ENSMUST00000155987 Gm11640 antisense Interval_16530 chr10 63386494 63387231 + 0 NA intron (ENSMUSG00000036764.12, intron 1 of 3) protein_coding-intron (ENSMUSG00000036764.12, intron 1 of 4) 291 ENSMUSG00000036764.12 ENSMUSG00000036764 ENSMUST00000136832 Dnajc12 protein_coding Interval_119909 chr4 140837881 140838490 + 0 NA intron (ENSMUSG00000025329.3, intron 1 of 15) protein_coding-intron (ENSMUSG00000025329.3, intron 1 of 15) 7593 ENSMUSG00000025329.3 ENSMUSG00000025329 ENSMUST00000026378 Padi1 protein_coding Interval_35506 chr12 24053710 24054715 + 0 NA intron (ENSMUSG00000073158.4, intron 3 of 3) protein_coding-intron (ENSMUSG00000073158.4, intron 3 of 3) -37215 ENSMUSG00000112987.1 ENSMUSG00000112987 ENSMUST00000222563 Gm5954 unprocessed_pseudogene Interval_88224 chr19 60810803 60812292 + 0 NA promoter-TSS (ENSMUSG00000024993.15) protein_coding-promoter-TSS (ENSMUSG00000024993.15) -64 ENSMUSG00000024993.15 ENSMUSG00000024993 ENSMUST00000142375 Fam45a protein_coding Interval_122621 chr5 24266170 24267055 + 0 NA Intergenic Intergenic 9790 ENSMUSG00000081071.1 ENSMUSG00000081071 ENSMUST00000117132 Gm9836 processed_pseudogene Interval_18261 chr10 84404842 84405767 + 0 NA intron (ENSMUSG00000020032.14, intron 2 of 6) protein_coding-intron (ENSMUSG00000020032.14, intron 2 of 6) -12916 ENSMUSG00000020032.14 ENSMUSG00000020032 ENSMUST00000129355 Nuak1 protein_coding Interval_112572 chr4 43334533 43335192 + 0 NA intron (ENSMUSG00000028457.18, intron 13 of 28) protein_coding-intron (ENSMUSG00000028457.18, intron 13 of 14) 67677 ENSMUSG00000028457.18 ENSMUSG00000028457 ENSMUST00000102953 Atp8b5 protein_coding Interval_12442 chr1 193503903 193505096 + 0 NA Intergenic Intergenic 3031 ENSMUSG00000065533.1 ENSMUSG00000065533 ENSMUST00000083599 Mir205 miRNA Interval_34148 chr11 120914357 120915178 + 0 NA intron (ENSMUSG00000048445.6, intron 3 of 18) protein_coding-intron (ENSMUSG00000048445.6, intron 3 of 18) -34314 ENSMUSG00000025161.16 ENSMUSG00000025161 ENSMUST00000134540 Slc16a3 protein_coding Interval_77907 chr18 5342507 5342790 + 0 NA Intergenic Intergenic -8235 ENSMUSG00000050945.8 ENSMUSG00000050945 ENSMUST00000234411 Zfp438 protein_coding Interval_50931 chr14 20831163 20831466 + 0 NA Intergenic Intergenic -5410 ENSMUSG00000021822.3 ENSMUSG00000021822 ENSMUST00000224141 Plau protein_coding Interval_122528 chr5 23605357 23605550 + 0 NA intron (ENSMUSG00000062604.11, intron 2 of 5) protein_coding-intron (ENSMUSG00000062604.11, intron 1 of 14) -63335 ENSMUSG00000062604.11 ENSMUSG00000062604 ENSMUST00000196592 Srpk2 protein_coding Interval_52744 chr14 49283936 49284620 + 0 NA Intergenic Intergenic 14995 ENSMUSG00000021852.14 ENSMUSG00000021852 ENSMUST00000146164 Slc35f4 protein_coding Interval_69586 chr16 94447177 94447705 + 0 NA intron (ENSMUSG00000040785.19, intron 33 of 44) protein_coding-intron (ENSMUSG00000040785.19, intron 34 of 45) 18368 ENSMUSG00000075829.1 ENSMUSG00000075829 ENSMUST00000101881 Gm23692 snRNA Interval_32839 chr11 111535834 111536269 + 0 NA Intergenic Intergenic 77255 ENSMUSG00000082448.1 ENSMUSG00000082448 ENSMUST00000120443 Gm11676 processed_pseudogene Interval_57955 chr15 25732897 25733221 + 0 NA intron (ENSMUSG00000022272.17, intron 9 of 21) protein_coding-intron (ENSMUSG00000022272.17, intron 10 of 40) -35497 ENSMUSG00000022272.17 ENSMUSG00000022272 ENSMUST00000145587 Myo10 protein_coding Interval_75179 chr17 64435283 64436634 + 0 NA Intergenic Intergenic -4848 ENSMUSG00000098984.1 ENSMUSG00000098984 ENSMUST00000185032 Mir6420 miRNA Interval_73883 chr17 45214566 45215486 + 0 NA Intergenic Intergenic 5060 ENSMUSG00000096425.1 ENSMUSG00000096425 ENSMUST00000178626 Gm24979 miRNA Interval_109585 chr3 144719363 144720845 + 0 NA promoter-TSS (ENSMUSG00000037062.13) protein_coding-promoter-TSS (ENSMUSG00000037062.13) -7780 ENSMUSG00000106089.1 ENSMUSG00000106089 ENSMUST00000200672 Gm9419 processed_pseudogene Interval_140543 chr6 119413720 119415063 + 0 NA intron (ENSMUSG00000030168.13, intron 1 of 3) protein_coding-intron (ENSMUSG00000030168.13, intron 1 of 7) 3084 ENSMUSG00000030168.13 ENSMUSG00000030168 ENSMUST00000189710 Adipor2 protein_coding Interval_128517 chr5 113778860 113779146 + 0 NA TTS (ENSMUSG00000025825.12) protein_coding-TTS (ENSMUSG00000025825.12) 5998 ENSMUSG00000025825.12 ENSMUSG00000025825 ENSMUST00000145592 Iscu protein_coding Interval_64301 chr16 10349964 10350161 + 0 NA Intergenic Intergenic -18777 ENSMUSG00000116270.1 ENSMUSG00000116270 ENSMUST00000229862 Gm1600 lincRNA Interval_138558 chr6 89302335 89303198 + 0 NA Intergenic Intergenic -1864 ENSMUSG00000097816.1 ENSMUSG00000097816 ENSMUST00000181258 Gm26811 antisense Interval_9489 chr1 157718696 157718927 + 0 NA Intergenic Intergenic -96675 ENSMUSG00000103962.1 ENSMUSG00000103962 ENSMUST00000193203 Gm38213 processed_pseudogene Interval_24654 chr11 35677198 35677448 + 0 NA intron (ENSMUSG00000056427.10, intron 28 of 35) protein_coding-intron (ENSMUSG00000056427.10, intron 28 of 35) 60507 ENSMUSG00000065583.1 ENSMUSG00000065583 ENSMUST00000083649 Mir218-2 miRNA Interval_143349 chr7 6049544 6049747 + 0 NA intron (ENSMUSG00000034690.13, intron 1 of 9) protein_coding-intron (ENSMUSG00000034690.13, intron 1 of 9) -6695 ENSMUSG00000109283.1 ENSMUSG00000109283 ENSMUST00000208067 Gm44733 lincRNA Interval_36080 chr12 35264056 35265238 + 0 NA Intergenic Intergenic -44244 ENSMUSG00000105488.1 ENSMUSG00000105488 ENSMUST00000199843 Gm44396 miRNA Interval_15467 chr10 47517059 47518336 + 0 NA Intergenic Intergenic -122426 ENSMUSG00000112702.1 ENSMUSG00000112702 ENSMUST00000217715 Gm47571 TEC Interval_162162 chr8 125618797 125620032 + 0 NA intron (ENSMUSG00000110629.1, intron 2 of 3) lincRNA-intron (ENSMUSG00000110629.1, intron 2 of 3) 34767 ENSMUSG00000110629.1 ENSMUSG00000110629 ENSMUST00000212530 4930567H12Rik lincRNA Interval_31826 chr11 103168653 103168910 + 0 NA Intergenic Intergenic -2326 ENSMUSG00000055805.15 ENSMUSG00000055805 ENSMUST00000129726 Fmnl1 protein_coding Interval_2375 chr1 38767185 38768131 + 0 NA TTS (ENSMUSG00000103531.1) TEC-TTS (ENSMUSG00000103531.1) 474 ENSMUSG00000103531.1 ENSMUSG00000103531 ENSMUST00000192930 2610300A13Rik TEC Interval_99914 chr2 165782133 165782944 + 0 NA Intergenic Intergenic -75146 ENSMUSG00000085274.1 ENSMUSG00000085274 ENSMUST00000155786 BC046401 processed_transcript Interval_153019 chr7 140907831 140909256 + 0 NA TTS (ENSMUSG00000109628.1) processed_transcript-TTS (ENSMUSG00000109628.1) 2495 ENSMUSG00000109628.1 ENSMUSG00000109628 ENSMUST00000209496 BC024386 processed_transcript Interval_9728 chr1 161321472 161321876 + 0 NA Intergenic Intergenic -22660 ENSMUSG00000104163.1 ENSMUSG00000104163 ENSMUST00000194329 Gm19057 processed_pseudogene Interval_3215 chr1 54934875 54935117 + 0 NA Intergenic Intergenic -18402 ENSMUSG00000102642.1 ENSMUSG00000102642 ENSMUST00000193052 A130048G24Rik TEC Interval_64067 chr16 7074176 7076124 + 0 NA intron (ENSMUSG00000008658.16, intron 1 of 12) protein_coding-intron (ENSMUSG00000008658.16, intron 3 of 14) -118597 ENSMUSG00000008658.16 ENSMUSG00000008658 ENSMUST00000231031 Rbfox1 protein_coding Interval_66052 chr16 31274712 31275473 + 0 NA promoter-TSS (ENSMUSG00000047714.14) protein_coding-promoter-TSS (ENSMUSG00000047714.14) -100 ENSMUSG00000047714.14 ENSMUSG00000047714 ENSMUST00000115233 Ppp1r2 protein_coding Interval_173602 chrX 100741840 100742261 + 0 NA intron (ENSMUSG00000086736.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000086736.1, intron 1 of 2) 957 ENSMUSG00000086736.1 ENSMUSG00000086736 ENSMUST00000145576 Gm14902 lincRNA Interval_27728 chr11 69703201 69705235 + 0 NA Intergenic Intergenic -8120 ENSMUSG00000018752.19 ENSMUSG00000018752 ENSMUST00000108649 Tnfsfm13 protein_coding Interval_64404 chr16 11157852 11158228 + 0 NA intron (ENSMUSG00000037965.14, intron 2 of 3) protein_coding-intron (ENSMUSG00000037965.14, intron 7 of 22) -6818 ENSMUSG00000037965.14 ENSMUSG00000037965 ENSMUST00000155255 Zc3h7a protein_coding Interval_10824 chr1 175624950 175626251 + 0 NA promoter-TSS (ENSMUSG00000026526.14) protein_coding-promoter-TSS (ENSMUSG00000026526.14) -6426 ENSMUSG00000039783.15 ENSMUSG00000039783 ENSMUST00000137174 Kmo protein_coding Interval_67070 chr16 42554535 42554740 + 0 NA Intergenic Intergenic -109289 ENSMUSG00000116679.1 ENSMUSG00000116679 ENSMUST00000232064 Gm49739 processed_pseudogene Interval_97747 chr2 143714543 143715360 + 0 NA intron (ENSMUSG00000027419.9, intron 5 of 11) protein_coding-intron (ENSMUSG00000027419.9, intron 5 of 11) 81014 ENSMUSG00000087115.7 ENSMUSG00000087115 ENSMUST00000156362 Pcsk2os2 antisense Interval_162386 chr8 127703509 127703959 + 0 NA Intergenic Intergenic 106028 ENSMUSG00000088580.1 ENSMUSG00000088580 ENSMUST00000157955 Gm22968 rRNA Interval_124251 chr5 42422570 42422964 + 0 NA Intergenic Intergenic 77647 ENSMUSG00000106813.1 ENSMUSG00000106813 ENSMUST00000202197 Gm7181 processed_pseudogene Interval_122501 chr5 23459955 23460177 + 0 NA intron (ENSMUSG00000029004.15, intron 2 of 12) protein_coding-intron (ENSMUSG00000029004.15, intron 2 of 25) -18489 ENSMUSG00000029004.15 ENSMUSG00000029004 ENSMUST00000194010 Kmt2e protein_coding Interval_97648 chr2 141994987 141995450 + 0 NA intron (ENSMUSG00000068205.14, intron 3 of 13) protein_coding-intron (ENSMUSG00000068205.14, intron 8 of 17) 156429 ENSMUSG00000082412.1 ENSMUSG00000082412 ENSMUST00000119675 Fau-ps1 processed_pseudogene Interval_110458 chr3 158478531 158479104 + 0 NA intron (ENSMUSG00000028176.13, intron 1 of 24) protein_coding-intron (ENSMUSG00000028176.13, intron 1 of 27) -10174 ENSMUSG00000105683.1 ENSMUSG00000105683 ENSMUST00000200331 Gm43487 TEC Interval_48385 chr13 98653817 98654292 + 0 NA Intergenic Intergenic -16644 ENSMUSG00000046082.4 ENSMUSG00000046082 ENSMUST00000050389 Tmem174 protein_coding Interval_119936 chr4 141017520 141018294 + 0 NA exon (ENSMUSG00000040860.16, exon 34 of 35) protein_coding-exon (ENSMUSG00000040860.16, exon 34 of 35) 7489 ENSMUSG00000060572.17 ENSMUSG00000060572 ENSMUST00000071977 Mfap2 protein_coding Interval_86976 chr19 45293531 45294067 + 0 NA Intergenic Intergenic 10384 ENSMUSG00000100417.2 ENSMUSG00000100417 ENSMUST00000235311 Gm28578 lincRNA Interval_23065 chr11 19592952 19593385 + 0 NA Intergenic Intergenic 34893 ENSMUSG00000086911.1 ENSMUSG00000086911 ENSMUST00000146531 Gm12027 lincRNA Interval_89616 chr2 23315012 23315262 + 0 NA Intergenic Intergenic -6109 ENSMUSG00000069132.3 ENSMUSG00000069132 ENSMUST00000102945 Nxph2 protein_coding Interval_83143 chr18 82097738 82097984 + 0 NA Intergenic Intergenic 102027 ENSMUSG00000118278.1 ENSMUSG00000118278 ENSMUST00000236169 Gm50293 TEC Interval_157585 chr8 71552734 71552994 + 0 NA Intergenic Intergenic 6007 ENSMUSG00000043664.7 ENSMUSG00000043664 ENSMUST00000052072 Tmem221 protein_coding Interval_166932 chr9 63998567 63999511 + 0 NA intron (ENSMUSG00000036867.7, intron 3 of 4) protein_coding-intron (ENSMUSG00000036867.7, intron 3 of 3) 22993 ENSMUSG00000036867.7 ENSMUSG00000036867 ENSMUST00000179458 Smad6 protein_coding Interval_72140 chr17 28244379 28245491 + 0 NA intron (ENSMUSG00000002250.16, intron 2 of 6) protein_coding-intron (ENSMUSG00000002250.16, intron 2 of 7) 12161 ENSMUSG00000002250.16 ENSMUSG00000002250 ENSMUST00000233383 Ppard protein_coding Interval_71032 chr17 17308306 17308548 + 0 NA intron (ENSMUSG00000072761.10, intron 1 of 3) lincRNA-intron (ENSMUSG00000072761.10, intron 1 of 3) 13984 ENSMUSG00000072761.10 ENSMUSG00000072761 ENSMUST00000105311 Gm6712 lincRNA Interval_109663 chr3 145815934 145817572 + 0 NA intron (ENSMUSG00000028194.15, intron 1 of 4) protein_coding-intron (ENSMUSG00000028194.15, intron 1 of 5) 6274 ENSMUSG00000028194.15 ENSMUSG00000028194 ENSMUST00000127193 Ddah1 protein_coding Interval_46726 chr13 69655548 69656252 + 0 NA promoter-TSS (ENSMUSG00000113790.1) processed_pseudogene-promoter-TSS (ENSMUSG00000113790.1) -388 ENSMUSG00000113790.1 ENSMUSG00000113790 ENSMUST00000222550 Gm17872 processed_pseudogene Interval_22120 chr11 6462671 6463769 + 0 NA Intergenic Intergenic -7315 ENSMUSG00000084280.1 ENSMUSG00000084280 ENSMUST00000118514 Gm11972 processed_pseudogene Interval_173661 chrX 101626887 101627092 + 0 NA Intergenic Intergenic -13151 ENSMUSG00000034160.13 ENSMUSG00000034160 ENSMUST00000147635 Ogt protein_coding Interval_52059 chr14 34947753 34948083 + 0 NA intron (ENSMUSG00000041078.7, intron 3 of 15) protein_coding-intron (ENSMUSG00000041078.7, intron 3 of 15) 53309 ENSMUSG00000065481.1 ENSMUSG00000065481 ENSMUST00000083547 Mir346 miRNA Interval_5087 chr1 84866506 84867278 + 0 NA intron (ENSMUSG00000073633.9, intron 1 of 3) protein_coding-intron (ENSMUSG00000073633.9, intron 1 of 3) -2259 ENSMUSG00000073633.9 ENSMUSG00000073633 ENSMUST00000151737 Fbxo36 protein_coding Interval_137273 chr6 70956142 70957754 + 0 NA exon (ENSMUSG00000055874.6, exon 1 of 2) protein_coding-exon (ENSMUSG00000055874.6, exon 1 of 2) 417 ENSMUSG00000055874.6 ENSMUSG00000055874 ENSMUST00000069634 Foxi3 protein_coding Interval_105744 chr3 89114951 89116702 + 0 NA promoter-TSS (ENSMUSG00000105654.1) processed_pseudogene-promoter-TSS (ENSMUSG00000105654.1) -898 ENSMUSG00000105654.1 ENSMUSG00000105654 ENSMUST00000196011 Gm29704 processed_pseudogene Interval_53829 chr14 62379490 62380985 + 0 NA Intergenic Intergenic 48112 ENSMUSG00000021932.13 ENSMUSG00000021932 ENSMUST00000156608 Rnaseh2b protein_coding Interval_8840 chr1 151466143 151467457 + 0 NA intron (ENSMUSG00000026484.13, intron 3 of 3) protein_coding-intron (ENSMUSG00000026484.13, intron 3 of 3) 9362 ENSMUSG00000026484.13 ENSMUSG00000026484 ENSMUST00000187991 Rnf2 protein_coding Interval_145547 chr7 35536043 35536346 + 0 NA intron (ENSMUSG00000030491.16, intron 1 of 29) protein_coding-intron (ENSMUSG00000030491.16, intron 1 of 11) 19000 ENSMUSG00000034875.5 ENSMUSG00000034875 ENSMUST00000123469 Nudt19 protein_coding Interval_122693 chr5 24698153 24698386 + 0 NA intron (ENSMUSG00000028954.11, intron 6 of 13) protein_coding-intron (ENSMUSG00000028954.11, intron 7 of 14) 6421 ENSMUSG00000097275.1 ENSMUSG00000097275 ENSMUST00000181925 Gm26648 antisense Interval_168322 chr9 78700496 78701237 + 0 NA intron (ENSMUSG00000046186.8, intron 26 of 32) protein_coding-intron (ENSMUSG00000046186.8, intron 26 of 32) 64734 ENSMUSG00000111139.1 ENSMUSG00000111139 ENSMUST00000217312 Gm47497 processed_pseudogene Interval_151240 chr7 120079867 120080282 + 0 NA intron (ENSMUSG00000052273.4, intron 6 of 60) protein_coding-intron (ENSMUSG00000052273.4, intron 7 of 60) 15206 ENSMUSG00000052273.4 ENSMUSG00000052273 ENSMUST00000213993 Dnah3 protein_coding Interval_42636 chr13 17457612 17459233 + 0 NA intron (ENSMUSG00000055137.7, intron 8 of 13) protein_coding-intron (ENSMUSG00000055137.7, intron 8 of 13) 17632 ENSMUSG00000094665.1 ENSMUSG00000094665 ENSMUST00000179101 Gm24873 snRNA Interval_161469 chr8 120595916 120596286 + 0 NA intron (ENSMUSG00000092329.1, intron 1 of 15) protein_coding-intron (ENSMUSG00000092329.1, intron 1 of 15) 1462 ENSMUSG00000110601.1 ENSMUSG00000110601 ENSMUST00000212445 Gm45834 processed_pseudogene Interval_119527 chr4 138141573 138142346 + 0 NA intron (ENSMUSG00000028760.16, intron 11 of 33) protein_coding-intron (ENSMUSG00000028760.16, intron 12 of 34) -3441 ENSMUSG00000084804.1 ENSMUSG00000084804 ENSMUST00000124620 1700095J12Rik antisense Interval_79731 chr18 34778704 34779546 + 0 NA intron (ENSMUSG00000038773.11, intron 1 of 22) protein_coding-intron (ENSMUSG00000038773.11, intron 1 of 23) -17770 ENSMUSG00000038773.11 ENSMUSG00000038773 ENSMUST00000223567 Kdm3b protein_coding Interval_8407 chr1 138919794 138920127 + 0 NA Intergenic Intergenic -3917 ENSMUSG00000103850.1 ENSMUSG00000103850 ENSMUST00000195391 Gm3933 processed_pseudogene Interval_115384 chr4 98436044 98436240 + 0 NA promoter-TSS (ENSMUSG00000061859.17) protein_coding-promoter-TSS (ENSMUSG00000061859.17) 40351 ENSMUSG00000061859.17 ENSMUSG00000061859 ENSMUST00000030290 Patj protein_coding Interval_148665 chr7 83970204 83971093 + 0 NA intron (ENSMUSG00000052353.13, intron 13 of 23) protein_coding-intron (ENSMUSG00000052353.13, intron 13 of 28) 75595 ENSMUSG00000038503.15 ENSMUSG00000038503 ENSMUST00000207373 Mesd protein_coding Interval_106052 chr3 91963670 91965119 + 0 NA Intergenic Intergenic 46471 ENSMUSG00000077085.1 ENSMUSG00000077085 ENSMUST00000103897 Gm23697 miRNA Interval_49607 chr13 113496951 113497655 + 0 NA intron (ENSMUSG00000114790.1, intron 1 of 6) lincRNA-intron (ENSMUSG00000114790.1, intron 1 of 6) 5541 ENSMUSG00000114790.1 ENSMUSG00000114790 ENSMUST00000223835 4921509O07Rik lincRNA Interval_14323 chr10 30875069 30875423 + 0 NA Intergenic Intergenic -5271 ENSMUSG00000110918.1 ENSMUSG00000110918 ENSMUST00000215584 Gm48862 processed_pseudogene Interval_12629 chr10 4013733 4013945 + 0 NA intron (ENSMUSG00000040675.17, intron 8 of 27) protein_coding-intron (ENSMUSG00000040675.17, intron 8 of 27) -18441 ENSMUSG00000040675.17 ENSMUSG00000040675 ENSMUST00000154517 Mthfd1l protein_coding Interval_23603 chr11 23730074 23730286 + 0 NA intron (ENSMUSG00000020280.12, intron 5 of 5) protein_coding-intron (ENSMUSG00000020280.12, intron 17 of 17) 40790 ENSMUSG00000020275.9 ENSMUSG00000020275 ENSMUST00000102864 Rel protein_coding Interval_45150 chr13 52754143 52755358 + 0 NA intron (ENSMUSG00000113737.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000113737.1, intron 1 of 2) 2455 ENSMUSG00000113737.1 ENSMUSG00000113737 ENSMUST00000223209 BB123696 lincRNA Interval_12333 chr1 192149393 192149739 + 0 NA exon (ENSMUSG00000097316.2, exon 4 of 4) antisense-exon (ENSMUSG00000097316.2, exon 4 of 4) 12221 ENSMUSG00000097316.2 ENSMUSG00000097316 ENSMUST00000195083 Gm10516 antisense Interval_128214 chr5 111792270 111794034 + 0 NA promoter-TSS (ENSMUSG00000105376.4) lincRNA-promoter-TSS (ENSMUSG00000105376.4) -235 ENSMUSG00000105376.4 ENSMUSG00000105376 ENSMUST00000200641 Gm36535 lincRNA Interval_41346 chr12 112964208 112964568 + 0 NA intron (ENSMUSG00000011158.8, intron 11 of 17) protein_coding-intron (ENSMUSG00000011158.8, intron 11 of 17) 7757 ENSMUSG00000113519.1 ENSMUSG00000113519 ENSMUST00000222117 Gm47541 sense_intronic Interval_45435 chr13 55159765 55160425 + 0 NA exon (ENSMUSG00000005320.9, exon 7 of 18) protein_coding-exon (ENSMUSG00000005320.9, exon 7 of 18) 4412 ENSMUSG00000005320.9 ENSMUSG00000005320 ENSMUST00000162167 Fgfr4 protein_coding Interval_103411 chr3 41386173 41386417 + 0 NA intron (ENSMUSG00000105297.1, intron 1 of 3) lincRNA-intron (ENSMUSG00000105297.1, intron 1 of 3) 32148 ENSMUSG00000105297.1 ENSMUSG00000105297 ENSMUST00000196142 1700052H01Rik lincRNA Interval_161710 chr8 122228742 122231185 + 0 NA intron (ENSMUSG00000092329.1, intron 1 of 15) protein_coding-intron (ENSMUSG00000092329.1, intron 1 of 15) -28657 ENSMUSG00000043903.4 ENSMUSG00000043903 ENSMUST00000055537 Zfp469 protein_coding Interval_29579 chr11 85103728 85103921 + 0 NA exon (ENSMUSG00000000804.14, exon 2 of 2) protein_coding-exon (ENSMUSG00000000804.14, exon 2 of 2) 7969 ENSMUSG00000082806.1 ENSMUSG00000082806 ENSMUST00000121801 Rpl13-ps1 processed_pseudogene Interval_60635 chr15 75843851 75845413 + 0 NA Intergenic Intergenic 11596 ENSMUSG00000098203.1 ENSMUSG00000098203 ENSMUST00000182514 Gm9568 processed_pseudogene Interval_107299 chr3 105559487 105560390 + 0 NA intron (ENSMUSG00000040896.16, intron 2 of 4) protein_coding-intron (ENSMUSG00000040896.16, intron 1 of 6) 57031 ENSMUSG00000105753.1 ENSMUSG00000105753 ENSMUST00000200070 Gm43847 sense_intronic Interval_131452 chr5 137321697 137322976 + 0 NA intron (ENSMUSG00000037344.14, intron 1 of 1) protein_coding-intron (ENSMUSG00000037344.14, intron 12 of 13) -8129 ENSMUSG00000023348.11 ENSMUSG00000023348 ENSMUST00000199564 Trip6 protein_coding Interval_27249 chr11 64908804 64909133 + 0 NA Intergenic Intergenic -65215 ENSMUSG00000086490.1 ENSMUSG00000086490 ENSMUST00000122911 Gm12292 lincRNA Interval_134195 chr6 22584097 22585357 + 0 NA Intergenic Intergenic -38191 ENSMUSG00000107282.1 ENSMUSG00000107282 ENSMUST00000201550 Gm43630 processed_pseudogene Interval_139091 chr6 94985972 94986832 + 0 NA Intergenic Intergenic 42568 ENSMUSG00000108187.1 ENSMUSG00000108187 ENSMUST00000203778 4930511E03Rik lincRNA Interval_22075 chr11 6178665 6179704 + 0 NA intron (ENSMUSG00000053838.14, intron 1 of 2) protein_coding-intron (ENSMUSG00000053838.14, intron 2 of 5) 3850 ENSMUSG00000083209.1 ENSMUSG00000083209 ENSMUST00000118848 Gm11969 processed_pseudogene Interval_107234 chr3 104794081 104795110 + 0 NA TTS (ENSMUSG00000002227.15) protein_coding-TTS (ENSMUSG00000002227.15) 5367 ENSMUSG00000002233.13 ENSMUSG00000002233 ENSMUST00000132721 Rhoc protein_coding Interval_133136 chr5 150097285 150098038 + 0 NA Intergenic Intergenic -14866 ENSMUSG00000107384.1 ENSMUSG00000107384 ENSMUST00000202037 Gm42557 antisense Interval_149910 chr7 102499050 102499601 + 0 NA intron (ENSMUSG00000044824.8, intron 1 of 2) protein_coding-intron (ENSMUSG00000044824.8, intron 1 of 1) 240 ENSMUSG00000044824.8 ENSMUSG00000044824 ENSMUST00000058750 Olfr545 protein_coding Interval_102014 chr3 14993744 14994383 + 0 NA intron (ENSMUSG00000098008.1, intron 3 of 3) lincRNA-intron (ENSMUSG00000098008.1, intron 3 of 3) -19511 ENSMUSG00000098186.1 ENSMUSG00000098186 ENSMUST00000182302 Gm7132 processed_pseudogene Interval_114707 chr4 84108193 84110000 + 0 NA Intergenic Intergenic 4201 ENSMUSG00000083044.1 ENSMUSG00000083044 ENSMUST00000120911 Gm12416 processed_pseudogene Interval_121320 chr4 154963992 154964933 + 0 NA intron (ENSMUSG00000029056.13, intron 1 of 19) protein_coding-intron (ENSMUSG00000029056.13, intron 1 of 18) -2784 ENSMUSG00000092483.1 ENSMUSG00000092483 ENSMUST00000153344 Gm20421 processed_transcript Interval_35783 chr12 29527127 29528277 + 0 NA promoter-TSS (ENSMUSG00000061911.15) protein_coding-promoter-TSS (ENSMUSG00000061911.15) 3413 ENSMUSG00000112390.1 ENSMUSG00000112390 ENSMUST00000218104 Gm20208 processed_transcript Interval_141369 chr6 127735267 127736003 + 0 NA intron (ENSMUSG00000030350.8, intron 1 of 9) protein_coding-intron (ENSMUSG00000030350.8, intron 1 of 9) -28113 ENSMUSG00000106833.1 ENSMUSG00000106833 ENSMUST00000200687 Gm42739 processed_pseudogene Interval_50410 chr14 12578385 12579121 + 0 NA intron (ENSMUSG00000054423.14, intron 6 of 28) protein_coding-intron (ENSMUSG00000054423.14, intron 6 of 28) -39915 ENSMUSG00000114453.1 ENSMUSG00000114453 ENSMUST00000225784 Gm17805 processed_pseudogene Interval_103265 chr3 37648374 37648977 + 0 NA TTS (ENSMUSG00000106062.1) TEC-TTS (ENSMUSG00000106062.1) 4068 ENSMUSG00000106062.1 ENSMUSG00000106062 ENSMUST00000199414 Gm43820 TEC Interval_91649 chr2 45328531 45328712 + 0 NA promoter-TSS (ENSMUSG00000081830.1) processed_pseudogene-promoter-TSS (ENSMUSG00000081830.1) -611 ENSMUSG00000081830.1 ENSMUSG00000081830 ENSMUST00000119290 Gm13475 processed_pseudogene Interval_128487 chr5 113607359 113607688 + 0 NA Intergenic Intergenic 28735 ENSMUSG00000063430.9 ENSMUSG00000063430 ENSMUST00000198673 Wscd2 protein_coding Interval_147047 chr7 59995778 59996331 + 0 NA intron (ENSMUSG00000102627.1, intron 2 of 2) protein_coding-intron (ENSMUSG00000102252.5, intron 2 of 9) 8995 ENSMUSG00000102627.1 ENSMUSG00000102627 ENSMUST00000194059 Snurf protein_coding Interval_171821 chr9 121448009 121448952 + 0 NA intron (ENSMUSG00000032536.12, intron 10 of 16) protein_coding-intron (ENSMUSG00000032536.12, intron 9 of 15) 46030 ENSMUSG00000032532.7 ENSMUSG00000032532 ENSMUST00000217581 Cck protein_coding Interval_77208 chr17 87360209 87361817 + 0 NA intron (ENSMUSG00000036918.16, intron 15 of 18) protein_coding-intron (ENSMUSG00000036918.16, intron 16 of 19) 3449 ENSMUSG00000089755.1 ENSMUSG00000089755 ENSMUST00000159031 0610012D04Rik antisense Interval_71690 chr17 25453247 25453470 + 0 NA Intergenic Intergenic -18239 ENSMUSG00000024175.2 ENSMUSG00000024175 ENSMUST00000234436 Tekt4 protein_coding Interval_159992 chr8 105647223 105647430 + 0 NA intron (ENSMUSG00000005698.15, intron 2 of 9) protein_coding-intron (ENSMUSG00000005698.15, intron 2 of 11) -9976 ENSMUSG00000098120.1 ENSMUSG00000098120 ENSMUST00000182046 Gm5914 lincRNA Interval_159438 chr8 94686025 94686259 + 0 NA intron (ENSMUSG00000031775.5, intron 1 of 3) protein_coding-intron (ENSMUSG00000031775.5, intron 1 of 3) -7536 ENSMUSG00000031775.5 ENSMUSG00000031775 ENSMUST00000213043 Pllp protein_coding Interval_77729 chr17 94734877 94736362 + 0 NA intron (ENSMUSG00000055660.9, intron 5 of 8) protein_coding-intron (ENSMUSG00000055660.9, intron 4 of 7) 14273 ENSMUSG00000055660.9 ENSMUSG00000055660 ENSMUST00000234593 Mettl4 protein_coding Interval_19266 chr10 95894279 95895102 + 0 NA intron (ENSMUSG00000112400.1, intron 2 of 2) lincRNA-intron (ENSMUSG00000112400.1, intron 2 of 2) 1247 ENSMUSG00000112400.1 ENSMUSG00000112400 ENSMUST00000218392 Gm47725 lincRNA Interval_45618 chr13 56278156 56280560 + 0 NA Intergenic Intergenic 16947 ENSMUSG00000021508.11 ENSMUSG00000021508 ENSMUST00000021970 Cxcl14 protein_coding Interval_94333 chr2 89423218 89423621 + 0 NA Intergenic Intergenic -3052 ENSMUSG00000075088.2 ENSMUSG00000075088 ENSMUST00000099780 Olfr1239 protein_coding Interval_152851 chr7 138827796 138828348 + 0 NA Intergenic Intergenic 7327 ENSMUSG00000110241.1 ENSMUSG00000110241 ENSMUST00000211620 Gm45506 processed_pseudogene Interval_105196 chr3 83765798 83767157 + 0 NA promoter-TSS (ENSMUSG00000027996.13) protein_coding-promoter-TSS (ENSMUSG00000027996.13) -376 ENSMUSG00000027996.13 ENSMUSG00000027996 ENSMUST00000154794 Sfrp2 protein_coding Interval_46140 chr13 61969674 61970207 + 0 NA Intergenic Intergenic -36728 ENSMUSG00000113014.1 ENSMUSG00000113014 ENSMUST00000221926 Selenok-ps8 processed_pseudogene Interval_109389 chr3 141549404 141549623 + 0 NA intron (ENSMUSG00000059921.15, intron 1 of 15) protein_coding-intron (ENSMUSG00000059921.15, intron 1 of 16) 83914 ENSMUSG00000059921.15 ENSMUSG00000059921 ENSMUST00000123631 Unc5c protein_coding Interval_122352 chr5 21638401 21640202 + 0 NA intron (ENSMUSG00000048520.16, intron 1 of 18) protein_coding-intron (ENSMUSG00000048520.16, intron 1 of 19) 6333 ENSMUSG00000048520.16 ENSMUSG00000048520 ENSMUST00000200168 Fbxl13 protein_coding Interval_50695 chr14 18294932 18295310 + 0 NA intron (ENSMUSG00000021774.13, intron 3 of 5) protein_coding-intron (ENSMUSG00000021774.13, intron 3 of 5) 23857 ENSMUSG00000021772.15 ENSMUSG00000021772 ENSMUST00000156186 Nkiras1 protein_coding Interval_122954 chr5 27813077 27814643 + 0 NA Intergenic Intergenic -3630 ENSMUSG00000105223.1 ENSMUSG00000105223 ENSMUST00000196573 Gm43433 processed_pseudogene Interval_115730 chr4 103119098 103120215 + 0 NA TTS (ENSMUSG00000028522.16) protein_coding-intron (ENSMUSG00000028522.16, intron 1 of 5) 266 ENSMUSG00000028522.16 ENSMUSG00000028522 ENSMUST00000128536 Mier1 protein_coding Interval_53470 chr14 57709270 57709598 + 0 NA intron (ENSMUSG00000114942.1, intron 2 of 8) protein_coding-intron (ENSMUSG00000021959.16, intron 2 of 7) 11421 ENSMUSG00000092358.1 ENSMUSG00000092358 ENSMUST00000172474 Gm20430 processed_pseudogene Interval_173111 chrX 72022880 72023361 + 0 NA Intergenic Intergenic 31265 ENSMUSG00000005864.7 ENSMUSG00000005864 ENSMUST00000145642 Cnga2 protein_coding Interval_140840 chr6 122286770 122287399 + 0 NA Intergenic Intergenic -4202 ENSMUSG00000030114.8 ENSMUSG00000030114 ENSMUST00000032207 Klrg1 protein_coding Interval_25798 chr11 51794709 51795606 + 0 NA Intergenic Intergenic 31463 ENSMUSG00000020386.5 ENSMUSG00000020386 ENSMUST00000136363 Sar1b protein_coding Interval_126928 chr5 97344248 97344486 + 0 NA intron (ENSMUSG00000104717.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000104717.1, intron 1 of 2) 18463 ENSMUSG00000104717.1 ENSMUSG00000104717 ENSMUST00000197615 Gm33969 lincRNA Interval_67001 chr16 39257037 39257265 + 0 NA Intergenic Intergenic -68245 ENSMUSG00000116965.1 ENSMUSG00000116965 ENSMUST00000231748 Gm36742 lincRNA Interval_77533 chr17 90935095 90935383 + 0 NA intron (ENSMUSG00000024109.18, intron 1 of 12) protein_coding-intron (ENSMUSG00000024109.18, intron 4 of 20) 74070 ENSMUSG00000090160.1 ENSMUSG00000090160 ENSMUST00000162121 4930480K15Rik antisense Interval_34596 chr12 6555161 6555355 + 0 NA Intergenic Intergenic -56643 ENSMUSG00000111967.1 ENSMUSG00000111967 ENSMUST00000218888 Gm3678 processed_pseudogene Interval_86676 chr19 42484111 42484349 + 0 NA Intergenic Intergenic -52445 ENSMUSG00000042401.8 ENSMUSG00000042401 ENSMUST00000238182 Crtac1 protein_coding Interval_118715 chr4 133332647 133333101 + 0 NA intron (ENSMUSG00000037622.14, intron 2 of 5) protein_coding-intron (ENSMUSG00000037622.14, intron 1 of 15) -10644 ENSMUSG00000037622.14 ENSMUSG00000037622 ENSMUST00000140976 Wdtc1 protein_coding Interval_28618 chr11 77209980 77210263 + 0 NA Intergenic Intergenic -9302 ENSMUSG00000109010.1 ENSMUSG00000109010 ENSMUST00000207081 Gm45027 lincRNA Interval_85775 chr19 30905540 30905886 + 0 NA intron (ENSMUSG00000052920.16, intron 4 of 17) protein_coding-intron (ENSMUSG00000052920.16, intron 4 of 17) -175131 ENSMUSG00000052920.16 ENSMUSG00000052920 ENSMUST00000182685 Prkg1 protein_coding Interval_170668 chr9 109975207 109975850 + 0 NA intron (ENSMUSG00000032479.15, intron 1 of 3) protein_coding-intron (ENSMUSG00000032479.15, intron 1 of 18) 5095 ENSMUSG00000106208.1 ENSMUSG00000106208 ENSMUST00000200117 Gm4734 processed_pseudogene Interval_42005 chr13 6442589 6443045 + 0 NA Intergenic Intergenic 46645 ENSMUSG00000101540.2 ENSMUSG00000101540 ENSMUST00000220779 Gm28465 lincRNA Interval_43767 chr13 36219801 36220574 + 0 NA intron (ENSMUSG00000021420.13, intron 2 of 7) protein_coding-intron (ENSMUSG00000021420.13, intron 2 of 6) -30464 ENSMUSG00000114407.1 ENSMUSG00000114407 ENSMUST00000223888 Gm48765 antisense Interval_169861 chr9 102555634 102556034 + 0 NA promoter-TSS (ENSMUSG00000102126.1) processed_pseudogene-promoter-TSS (ENSMUSG00000102126.1) -274 ENSMUSG00000102126.1 ENSMUSG00000102126 ENSMUST00000189462 Gm29143 processed_pseudogene Interval_145028 chr7 29505171 29506107 + 0 NA promoter-TSS (ENSMUSG00000030583.16) protein_coding-promoter-TSS (ENSMUSG00000030583.16) -18904 ENSMUSG00000074224.3 ENSMUSG00000074224 ENSMUST00000098602 4932431P20Rik transcribed_unitary_pseudogene Interval_97727 chr2 143491697 143491874 + 0 NA Intergenic Intergenic 15274 ENSMUSG00000080895.1 ENSMUSG00000080895 ENSMUST00000121589 Gm11645 processed_pseudogene Interval_106996 chr3 102701684 102702397 + 0 NA Intergenic Intergenic -12212 ENSMUSG00000105570.1 ENSMUSG00000105570 ENSMUST00000198349 Gm42682 lincRNA Interval_94685 chr2 93333231 93335070 + 0 NA intron (ENSMUSG00000027217.13, intron 1 of 2) protein_coding-intron (ENSMUSG00000027217.13, intron 1 of 9) -21635 ENSMUSG00000027217.13 ENSMUSG00000027217 ENSMUST00000152141 Tspan18 protein_coding Interval_94419 chr2 91083179 91083534 + 0 NA intron (ENSMUSG00000002111.8, intron 1 of 3) protein_coding-intron (ENSMUSG00000002111.8, intron 1 of 1) 966 ENSMUSG00000002111.8 ENSMUSG00000002111 ENSMUST00000132741 Spi1 protein_coding Interval_4655 chr1 75732336 75733725 + 0 NA Intergenic Intergenic 96640 ENSMUSG00000082012.1 ENSMUSG00000082012 ENSMUST00000121823 Gm5257 processed_pseudogene Interval_119271 chr4 136580471 136580771 + 0 NA intron (ENSMUSG00000036940.15, intron 2 of 18) protein_coding-intron (ENSMUSG00000036940.15, intron 2 of 16) 4039 ENSMUSG00000082711.1 ENSMUSG00000082711 ENSMUST00000118562 Gm12987 processed_pseudogene Interval_83591 chr18 90367744 90368150 + 0 NA Intergenic Intergenic 25461 ENSMUSG00000118372.1 ENSMUSG00000118372 ENSMUST00000236347 Gm50434 processed_pseudogene Interval_112278 chr4 39851813 39852570 + 0 NA Intergenic Intergenic -7317 ENSMUSG00000082022.1 ENSMUSG00000082022 ENSMUST00000117380 Gm12386 processed_pseudogene Interval_86430 chr19 40428204 40428738 + 0 NA intron (ENSMUSG00000025006.18, intron 1 of 21) protein_coding-intron (ENSMUSG00000025006.18, intron 2 of 3) -51597 ENSMUSG00000025006.18 ENSMUSG00000025006 ENSMUST00000225293 Sorbs1 protein_coding Interval_54360 chr14 67923679 67924727 + 0 NA intron (ENSMUSG00000044447.5, intron 1 of 17) protein_coding-intron (ENSMUSG00000044447.5, intron 1 of 51) -64458 ENSMUSG00000098866.1 ENSMUSG00000098866 ENSMUST00000183732 Mir6539 miRNA Interval_47521 chr13 86237966 86238262 + 0 NA TTS (ENSMUSG00000098152.1) processed_pseudogene-TTS (ENSMUSG00000098152.1) 2287 ENSMUSG00000098152.1 ENSMUSG00000098152 ENSMUST00000182392 Gm27025 processed_pseudogene Interval_7957 chr1 134849497 134850071 + 0 NA intron (ENSMUSG00000073557.12, intron 13 of 24) protein_coding-intron (ENSMUSG00000073557.12, intron 13 of 23) 15642 ENSMUSG00000101168.1 ENSMUSG00000101168 ENSMUST00000188123 Gm28892 antisense Interval_102732 chr3 30658394 30659211 + 0 NA intron (ENSMUSG00000027703.16, intron 4 of 6) protein_coding-intron (ENSMUSG00000027703.16, intron 3 of 5) -10933 ENSMUSG00000027702.7 ENSMUSG00000027702 ENSMUST00000029252 Lrrc34 protein_coding Interval_98539 chr2 153084539 153084758 + 0 NA Intergenic Intergenic 18693 ENSMUSG00000027474.13 ENSMUSG00000027474 ENSMUST00000109800 Ccm2l protein_coding Interval_124513 chr5 49960945 49962265 + 0 NA intron (ENSMUSG00000029090.12, intron 18 of 18) protein_coding-intron (ENSMUSG00000029090.12, intron 18 of 18) -17047 ENSMUSG00000104634.1 ENSMUSG00000104634 ENSMUST00000198627 Gm42461 TEC Interval_134183 chr6 22404464 22404694 + 0 NA Intergenic Intergenic -60666 ENSMUSG00000029672.16 ENSMUSG00000029672 ENSMUST00000168965 Fam3c protein_coding Interval_20699 chr10 120359489 120359901 + 0 NA Intergenic Intergenic -4518 ENSMUSG00000034764.15 ENSMUSG00000034764 ENSMUST00000161511 1700006J14Rik antisense Interval_174415 chrX 151918556 151918770 + 0 NA exon (ENSMUSG00000025261.18, exon 66 of 83) protein_coding-exon (ENSMUSG00000025261.18, exon 66 of 83) 5449 ENSMUSG00000065536.2 ENSMUSG00000065536 ENSMUST00000083602 Mir98 miRNA Interval_48015 chr13 95228851 95229383 + 0 NA intron (ENSMUSG00000021684.17, intron 1 of 12) protein_coding-intron (ENSMUSG00000021684.17, intron 1 of 4) -6304 ENSMUSG00000021684.17 ENSMUSG00000021684 ENSMUST00000162716 Pde8b protein_coding Interval_126821 chr5 93167188 93167417 + 0 NA intron (ENSMUSG00000058013.11, intron 8 of 9) protein_coding-intron (ENSMUSG00000058013.11, intron 8 of 9) -9668 ENSMUSG00000107019.1 ENSMUSG00000107019 ENSMUST00000202150 Gm43682 TEC Interval_47344 chr13 81703163 81703835 + 0 NA intron (ENSMUSG00000035834.11, intron 1 of 2) protein_coding-intron (ENSMUSG00000035834.11, intron 1 of 7) -8031 ENSMUSG00000051098.6 ENSMUSG00000051098 ENSMUST00000224299 Mblac2 protein_coding Interval_89879 chr2 26182388 26183640 + 0 NA Intergenic Intergenic 8664 ENSMUSG00000085545.1 ENSMUSG00000085545 ENSMUST00000133025 Gm13553 lincRNA Interval_161408 chr8 120297988 120299161 + 0 NA intron (ENSMUSG00000031822.20, intron 1 of 2) protein_coding-intron (ENSMUSG00000092329.1, intron 1 of 15) -70344 ENSMUSG00000097960.1 ENSMUSG00000097960 ENSMUST00000183235 A330074K22Rik lincRNA Interval_117721 chr4 125780103 125780497 + 0 NA Intergenic Intergenic 142117 ENSMUSG00000085562.7 ENSMUSG00000085562 ENSMUST00000144539 2610028E06Rik lincRNA Interval_166590 chr9 61138595 61139049 + 0 NA exon (ENSMUSG00000110998.1, exon 1 of 3) lincRNA-exon (ENSMUSG00000110998.1, exon 1 of 3) 307 ENSMUSG00000110998.1 ENSMUSG00000110998 ENSMUST00000216012 I730028E13Rik lincRNA Interval_130600 chr5 129111272 129112468 + 0 NA intron (ENSMUSG00000044017.16, intron 3 of 24) protein_coding-intron (ENSMUSG00000044017.16, intron 3 of 25) 15113 ENSMUSG00000044017.16 ENSMUSG00000044017 ENSMUST00000156437 Adgrd1 protein_coding Interval_134741 chr6 31121083 31121436 + 0 NA intron (ENSMUSG00000044471.12, intron 2 of 5) lincRNA-intron (ENSMUSG00000044471.12, intron 3 of 3) -10339 ENSMUSG00000104030.1 ENSMUSG00000104030 ENSMUST00000195672 5330406M23Rik TEC Interval_109134 chr3 136525996 136526201 + 0 NA Intergenic Intergenic -76749 ENSMUSG00000099508.1 ENSMUSG00000099508 ENSMUST00000189233 1700030L20Rik lincRNA Interval_49762 chr13 114742178 114742392 + 0 NA Intergenic Intergenic -76009 ENSMUSG00000015536.14 ENSMUSG00000015536 ENSMUST00000164871 Mocs2 protein_coding Interval_36832 chr12 54520067 54520739 + 0 NA Intergenic Intergenic -3324 ENSMUSG00000113947.1 ENSMUSG00000113947 ENSMUST00000223133 Gm10465 lincRNA Interval_128952 chr5 116273686 116274151 + 0 NA intron (ENSMUSG00000043913.14, intron 1 of 5) protein_coding-intron (ENSMUSG00000043913.14, intron 1 of 13) 15045 ENSMUSG00000043913.14 ENSMUSG00000043913 ENSMUST00000086483 Ccdc60 protein_coding Interval_75386 chr17 66291141 66292091 + 0 NA Intergenic Intergenic 27896 ENSMUSG00000117010.1 ENSMUSG00000117010 ENSMUST00000233050 Gm49933 processed_pseudogene Interval_127810 chr5 107979115 107979418 + 0 NA intron (ENSMUSG00000029270.10, intron 1 of 4) protein_coding-intron (ENSMUSG00000029270.10, intron 1 of 4) -6268 ENSMUSG00000029270.10 ENSMUSG00000029270 ENSMUST00000153172 Dipk1a protein_coding Interval_39581 chr12 91063564 91063920 + 0 NA promoter-TSS (ENSMUSG00000061533.16) protein_coding-promoter-TSS (ENSMUSG00000061533.16) 17894 ENSMUSG00000085004.2 ENSMUSG00000085004 ENSMUST00000129932 5430427M07Rik antisense Interval_126404 chr5 88112078 88112915 + 0 NA promoter-TSS (ENSMUSG00000079439.1) protein_coding-promoter-TSS (ENSMUSG00000079439.1) -966 ENSMUSG00000079439.1 ENSMUSG00000079439 ENSMUST00000113257 Gm11116 protein_coding Interval_134040 chr6 17939341 17939789 + 0 NA intron (ENSMUSG00000029534.17, intron 15 of 15) protein_coding-intron (ENSMUSG00000029534.17, intron 14 of 14) 24569 ENSMUSG00000106858.1 ENSMUSG00000106858 ENSMUST00000202926 Gm43844 TEC Interval_118175 chr4 129361758 129362571 + 0 NA intron (ENSMUSG00000028807.2, intron 2 of 4) protein_coding-intron (ENSMUSG00000028807.2, intron 2 of 4) 15952 ENSMUSG00000028807.2 ENSMUSG00000028807 ENSMUST00000030610 Zbtb8a protein_coding Interval_29844 chr11 87213797 87214465 + 0 NA intron (ENSMUSG00000018548.15, intron 5 of 6) protein_coding-intron (ENSMUSG00000018548.15, intron 22 of 23) 24057 ENSMUSG00000018548.15 ENSMUSG00000018548 ENSMUST00000154138 Trim37 protein_coding Interval_89770 chr2 25322924 25323474 + 0 NA Intergenic Intergenic -4073 ENSMUSG00000026959.13 ENSMUSG00000026959 ENSMUST00000144402 Grin1 protein_coding Interval_4314 chr1 72645258 72645737 + 0 NA intron (ENSMUSG00000039342.5, intron 21 of 22) protein_coding-intron (ENSMUSG00000039342.5, intron 22 of 23) 4309 ENSMUSG00000110712.1 ENSMUSG00000110712 ENSMUST00000211909 Gm39662 antisense Interval_5138 chr1 85965666 85967165 + 0 NA Intergenic Intergenic -5408 ENSMUSG00000049608.8 ENSMUSG00000049608 ENSMUST00000086975 Gpr55 protein_coding Interval_159078 chr8 89724297 89724709 + 0 NA Intergenic Intergenic -57199 ENSMUSG00000088883.1 ENSMUSG00000088883 ENSMUST00000158258 Gm24212 snoRNA Interval_10490 chr1 171294296 171295257 + 0 NA exon (ENSMUSG00000062963.10, exon 2 of 7) protein_coding-exon (ENSMUSG00000062963.10, exon 2 of 7) 164 ENSMUSG00000062963.10 ENSMUSG00000062963 ENSMUST00000152621 Ufc1 protein_coding Interval_15345 chr10 44873806 44874226 + 0 NA Intergenic Intergenic -7230 ENSMUSG00000111868.1 ENSMUSG00000111868 ENSMUST00000215415 Gm47398 lincRNA Interval_105661 chr3 88442765 88443150 + 0 NA intron (ENSMUSG00000028064.17, intron 10 of 14) protein_coding-intron (ENSMUSG00000028064.17, intron 10 of 14) -2006 ENSMUSG00000098655.1 ENSMUSG00000098655 ENSMUST00000183768 Mir7011 miRNA Interval_84035 chr19 6871291 6872323 + 0 NA Intergenic Intergenic -23454 ENSMUSG00000047810.9 ENSMUSG00000047810 ENSMUST00000237252 Ccdc88b protein_coding Interval_40437 chr12 104888124 104888725 + 0 NA Intergenic Intergenic -23348 ENSMUSG00000021097.15 ENSMUSG00000021097 ENSMUST00000222412 Clmn protein_coding Interval_5564 chr1 89837675 89838482 + 0 NA intron (ENSMUSG00000055013.16, intron 14 of 16) protein_coding-intron (ENSMUSG00000055013.16, intron 15 of 17) 12597 ENSMUSG00000103252.1 ENSMUSG00000103252 ENSMUST00000193177 Gm37521 TEC Interval_105341 chr3 85145514 85146054 + 0 NA intron (ENSMUSG00000102805.5, intron 3 of 9) protein_coding-intron (ENSMUSG00000102805.5, intron 3 of 9) 6912 ENSMUSG00000104290.1 ENSMUSG00000104290 ENSMUST00000194445 Gm38041 processed_pseudogene Interval_36211 chr12 39539109 39539317 + 0 NA Intergenic Intergenic -12258 ENSMUSG00000113343.1 ENSMUSG00000113343 ENSMUST00000222673 Gm34923 lincRNA Interval_53986 chr14 64103083 64103469 + 0 NA intron (ENSMUSG00000091686.1, intron 2 of 3) lincRNA-intron (ENSMUSG00000091686.1, intron 2 of 3) 959 ENSMUSG00000091686.1 ENSMUSG00000091686 ENSMUST00000166038 4930471C04Rik lincRNA Interval_6451 chr1 109457813 109459069 + 0 NA Intergenic Intergenic 116688 ENSMUSG00000100884.1 ENSMUSG00000100884 ENSMUST00000185658 Gm28281 processed_pseudogene Interval_124386 chr5 45424211 45426461 + 0 NA promoter-TSS (ENSMUSG00000029092.9) lincRNA-promoter-TSS (ENSMUSG00000029092.9) -9053 ENSMUSG00000105255.1 ENSMUSG00000105255 ENSMUST00000196216 Gm42413 antisense Interval_126035 chr5 76998342 76999005 + 0 NA TTS (ENSMUSG00000036323.14) protein_coding-TTS (ENSMUSG00000036323.14) -7799 ENSMUSG00000063820.11 ENSMUSG00000063820 ENSMUST00000134197 Arl9 protein_coding Interval_50199 chr14 9535547 9536015 + 0 NA Intergenic Intergenic -66226 ENSMUSG00000114298.1 ENSMUSG00000114298 ENSMUST00000224617 Gm48371 lincRNA Interval_6206 chr1 101749703 101750078 + 0 NA Intergenic Intergenic 4653 ENSMUSG00000100065.1 ENSMUSG00000100065 ENSMUST00000189423 Gm18969 processed_pseudogene Interval_128675 chr5 114657840 114659105 + 0 NA promoter-TSS (ENSMUSG00000014158.12) protein_coding-promoter-TSS (ENSMUSG00000014158.12) -13573 ENSMUSG00000014158.12 ENSMUSG00000014158 ENSMUST00000212469 Trpv4 protein_coding Interval_70764 chr17 14232382 14232887 + 0 NA Intergenic Intergenic -17217 ENSMUSG00000117254.1 ENSMUSG00000117254 ENSMUST00000233271 Gm34567 lincRNA Interval_174294 chrX 144149847 144151276 + 0 NA Intergenic Intergenic -3134 ENSMUSG00000085139.1 ENSMUSG00000085139 ENSMUST00000135687 A730046J19Rik protein_coding Interval_136899 chr6 63667413 63668054 + 0 NA intron (ENSMUSG00000071424.10, intron 2 of 8) protein_coding-intron (ENSMUSG00000071424.10, intron 2 of 15) 116334 ENSMUSG00000108068.1 ENSMUSG00000108068 ENSMUST00000204208 Gm44075 processed_pseudogene Interval_76138 chr17 75453766 75454217 + 0 NA intron (ENSMUSG00000071042.12, intron 1 of 16) protein_coding-intron (ENSMUSG00000071042.12, intron 1 of 16) 18095 ENSMUSG00000071042.12 ENSMUSG00000071042 ENSMUST00000234011 Rasgrp3 protein_coding Interval_11325 chr1 180965194 180965860 + 0 NA intron (ENSMUSG00000026519.16, intron 14 of 22) protein_coding-intron (ENSMUSG00000026519.16, intron 14 of 22) -7378 ENSMUSG00000085563.2 ENSMUSG00000085563 ENSMUST00000128545 2210411M09Rik antisense Interval_126390 chr5 87850301 87850888 + 0 NA promoter-TSS (ENSMUSG00000067156.5) transcribed_processed_pseudogene-promoter-TSS (ENSMUSG00000067156.5) 235 ENSMUSG00000067156.5 ENSMUSG00000067156 ENSMUST00000180954 Gm7337 transcribed_processed_pseudogene Interval_20905 chr10 121893178 121893378 + 0 NA intron (ENSMUSG00000020121.15, intron 4 of 21) protein_coding-intron (ENSMUSG00000020121.15, intron 4 of 21) -61220 ENSMUSG00000112596.1 ENSMUSG00000112596 ENSMUST00000218664 Gm48804 TEC Interval_5053 chr1 84708375 84708571 + 0 NA Intergenic Intergenic 12634 ENSMUSG00000093254.1 ENSMUSG00000093254 ENSMUST00000175513 Mir5126 miRNA Interval_84666 chr19 14848919 14849307 + 0 NA Intergenic Intergenic 111653 ENSMUSG00000063586.1 ENSMUSG00000063586 ENSMUST00000072982 Gm5513 processed_pseudogene Interval_35652 chr12 26645461 26646882 + 0 NA TTS (ENSMUSG00000113524.1) lincRNA-TTS (ENSMUSG00000113524.1) -43862 ENSMUSG00000113628.1 ENSMUSG00000113628 ENSMUST00000221140 1700020D12Rik lincRNA Interval_9699 chr1 161142581 161143233 + 0 NA intron (ENSMUSG00000044835.15, intron 1 of 4) protein_coding-intron (ENSMUSG00000044835.15, intron 1 of 5) 184 ENSMUSG00000044835.15 ENSMUSG00000044835 ENSMUST00000052245 Ankrd45 protein_coding Interval_5953 chr1 93477992 93479472 + 0 NA promoter-TSS (ENSMUSG00000026276.20) protein_coding-promoter-TSS (ENSMUSG00000026276.20) -261 ENSMUSG00000116048.1 ENSMUSG00000116048 ENSMUST00000168776 Septin2 protein_coding Interval_171366 chr9 117106072 117107570 + 0 NA intron (ENSMUSG00000039607.17, intron 4 of 15) protein_coding-intron (ENSMUSG00000039607.17, intron 2 of 12) 41294 ENSMUSG00000092516.1 ENSMUSG00000092516 ENSMUST00000174520 Gm20397 processed_pseudogene Interval_84290 chr19 9878039 9878441 + 0 NA exon (ENSMUSG00000024660.9, exon 12 of 18) protein_coding-exon (ENSMUSG00000024660.9, exon 12 of 18) -9245 ENSMUSG00000118138.1 ENSMUSG00000118138 ENSMUST00000235839 Gm50322 lincRNA Interval_34250 chr11 121614420 121615288 + 0 NA intron (ENSMUSG00000039230.14, intron 9 of 9) protein_coding-intron (ENSMUSG00000039230.14, intron 38 of 38) 16538 ENSMUSG00000039230.14 ENSMUSG00000039230 ENSMUST00000151666 Tbcd protein_coding Interval_124572 chr5 51450809 51451032 + 0 NA Intergenic Intergenic 33385 ENSMUSG00000105442.1 ENSMUSG00000105442 ENSMUST00000198724 Gm42614 TEC Interval_65968 chr16 30597034 30597474 + 0 NA Intergenic Intergenic -2469 ENSMUSG00000046546.3 ENSMUSG00000046546 ENSMUST00000059078 Fam43a protein_coding Interval_110196 chr3 154175770 154176526 + 0 NA intron (ENSMUSG00000028360.10, intron 2 of 21) protein_coding-intron (ENSMUSG00000028360.10, intron 2 of 21) 37051 ENSMUSG00000104622.1 ENSMUSG00000104622 ENSMUST00000199871 Gm42541 TEC Interval_123416 chr5 32384171 32384447 + 0 NA Intergenic Intergenic 8997 ENSMUSG00000107036.1 ENSMUSG00000107036 ENSMUST00000202171 Gm7596 lincRNA Interval_84826 chr19 17157393 17157626 + 0 NA intron (ENSMUSG00000039126.10, intron 1 of 8) protein_coding-intron (ENSMUSG00000039126.10, intron 9 of 19) 31862 ENSMUSG00000039126.10 ENSMUSG00000039126 ENSMUST00000224117 Prune2 protein_coding Interval_29179 chr11 81133779 81135209 + 0 NA intron (ENSMUSG00000020704.13, intron 1 of 9) protein_coding-intron (ENSMUSG00000020704.13, intron 1 of 9) 62091 ENSMUSG00000085130.1 ENSMUSG00000085130 ENSMUST00000150536 Gm11417 antisense Interval_101663 chr3 8690031 8690606 + 0 NA Intergenic Intergenic -10841 ENSMUSG00000088094.1 ENSMUSG00000088094 ENSMUST00000157469 Gm23670 snoRNA Interval_163613 chr9 22544807 22545097 + 0 NA intron (ENSMUSG00000035919.16, intron 2 of 5) protein_coding-intron (ENSMUSG00000035919.16, intron 5 of 21) 32495 ENSMUSG00000035919.16 ENSMUSG00000035919 ENSMUST00000124076 Bbs9 protein_coding Interval_82449 chr18 74103798 74104208 + 0 NA Intergenic Intergenic 38901 ENSMUSG00000053861.1 ENSMUSG00000053861 ENSMUST00000066583 Gm9925 protein_coding Interval_167909 chr9 74110034 74110912 + 0 NA promoter-TSS (ENSMUSG00000044976.17) protein_coding-promoter-TSS (ENSMUSG00000044976.17) 117 ENSMUSG00000044976.17 ENSMUSG00000044976 ENSMUST00000149439 Wdr72 protein_coding Interval_141373 chr6 127777387 127777568 + 0 NA exon (ENSMUSG00000107042.1, exon 1 of 1) TEC-exon (ENSMUSG00000107042.1, exon 1 of 1) 844 ENSMUSG00000107042.1 ENSMUSG00000107042 ENSMUST00000201403 4921513H07Rik TEC Interval_79872 chr18 35675311 35676634 + 0 NA intron (ENSMUSG00000024350.6, intron 3 of 3) protein_coding-intron (ENSMUSG00000024350.6, intron 7 of 7) -13809 ENSMUSG00000117874.1 ENSMUSG00000117874 ENSMUST00000235292 Gm50318 protein_coding Interval_15810 chr10 57469309 57469523 + 0 NA Intergenic Intergenic 16935 ENSMUSG00000097370.2 ENSMUSG00000097370 ENSMUST00000180831 4930467K11Rik lincRNA Interval_135091 chr6 35326130 35326416 + 0 NA promoter-TSS (ENSMUSG00000047420.8) protein_coding-promoter-TSS (ENSMUSG00000047420.8) -132 ENSMUSG00000047420.8 ENSMUSG00000047420 ENSMUST00000051176 Fam180a protein_coding Interval_54307 chr14 67481828 67482114 + 0 NA intron (ENSMUSG00000114744.1, intron 2 of 3) lincRNA-intron (ENSMUSG00000114744.1, intron 2 of 3) 5098 ENSMUSG00000114744.1 ENSMUSG00000114744 ENSMUST00000223991 Gm38409 lincRNA Interval_1013 chr1 14052850 14053075 + 0 NA Intergenic Intergenic 59857 ENSMUSG00000104209.1 ENSMUSG00000104209 ENSMUST00000193148 Gm37400 TEC Interval_41742 chr12 118605263 118605923 + 0 NA Intergenic Intergenic 2916 ENSMUSG00000114034.1 ENSMUSG00000114034 ENSMUST00000222831 Gm9267 processed_pseudogene Interval_37659 chr12 70898683 70899656 + 0 NA intron (ENSMUSG00000048285.9, intron 12 of 12) protein_coding-intron (ENSMUSG00000048285.9, intron 13 of 13) 12982 ENSMUSG00000113584.1 ENSMUSG00000113584 ENSMUST00000221434 Gm46355 lincRNA Interval_171890 chr9 122137622 122138181 + 0 NA TTS (ENSMUSG00000038145.17) protein_coding-TTS (ENSMUSG00000038145.17) -4548 ENSMUSG00000111434.1 ENSMUSG00000111434 ENSMUST00000213905 Gm47121 sense_intronic Interval_140162 chr6 114937024 114937225 + 0 NA intron (ENSMUSG00000030315.15, intron 2 of 5) protein_coding-intron (ENSMUSG00000030315.15, intron 2 of 4) -15308 ENSMUSG00000030315.15 ENSMUSG00000030315 ENSMUST00000204693 Vgll4 protein_coding Interval_24251 chr11 31801583 31801851 + 0 NA intron (ENSMUSG00000085772.7, intron 3 of 4) lincRNA-intron (ENSMUSG00000085772.7, intron 2 of 3) 22807 ENSMUSG00000085772.7 ENSMUSG00000085772 ENSMUST00000126265 D630024D03Rik lincRNA Interval_71908 chr17 26938844 26940179 + 0 NA promoter-TSS (ENSMUSG00000024194.16) protein_coding-promoter-TSS (ENSMUSG00000024194.16) -88 ENSMUSG00000024194.16 ENSMUSG00000024194 ENSMUST00000235460 Cuta protein_coding Interval_90158 chr2 28621848 28623110 + 0 NA promoter-TSS (ENSMUSG00000026815.14) protein_coding-promoter-TSS (ENSMUSG00000026815.14) -497 ENSMUSG00000026815.14 ENSMUSG00000026815 ENSMUST00000145690 Gfi1b protein_coding Interval_78437 chr18 12861663 12863785 + 0 NA promoter-TSS (ENSMUSG00000044252.18) protein_coding-promoter-TSS (ENSMUSG00000044252.18) 295 ENSMUSG00000117494.1 ENSMUSG00000117494 ENSMUST00000234213 Gm49970 antisense Interval_78835 chr18 20894823 20896335 + 0 NA intron (ENSMUSG00000033382.15, intron 1 of 28) protein_coding-intron (ENSMUSG00000033382.15, intron 1 of 15) 514 ENSMUSG00000033382.15 ENSMUSG00000033382 ENSMUST00000224530 Trappc8 protein_coding Interval_139626 chr6 103746025 103746710 + 0 NA intron (ENSMUSG00000030077.11, intron 26 of 26) protein_coding-intron (ENSMUSG00000030077.11, intron 26 of 26) 48617 ENSMUSG00000030077.11 ENSMUSG00000030077 ENSMUST00000205098 Chl1 protein_coding Interval_174001 chrX 127762066 127762596 + 0 NA Intergenic Intergenic -25777 ENSMUSG00000043569.7 ENSMUSG00000043569 ENSMUST00000052500 Cldn34c4 protein_coding Interval_154308 chr8 14272631 14273463 + 0 NA TTS (ENSMUSG00000088311.1) snoRNA-TTS (ENSMUSG00000088311.1) 264 ENSMUSG00000088311.1 ENSMUSG00000088311 ENSMUST00000157686 Gm26184 snoRNA Interval_82039 chr18 67312086 67312748 + 0 NA intron (ENSMUSG00000024525.7, intron 3 of 4) protein_coding-intron (ENSMUSG00000024525.7, intron 5 of 7) 3828 ENSMUSG00000024525.7 ENSMUSG00000024525 ENSMUST00000237149 Impa2 protein_coding Interval_110671 chr4 6159222 6159729 + 0 NA Intergenic Intergenic -31623 ENSMUSG00000028243.5 ENSMUSG00000028243 ENSMUST00000029907 Ubxn2b protein_coding Interval_151831 chr7 126986227 126986636 + 0 NA TTS (ENSMUSG00000030681.18) protein_coding-TTS (ENSMUSG00000030681.18) 8198 ENSMUSG00000030682.4 ENSMUSG00000030682 ENSMUST00000206964 Cdipt protein_coding Interval_90991 chr2 33975851 33976330 + 0 NA Intergenic Intergenic -2156 ENSMUSG00000086904.1 ENSMUSG00000086904 ENSMUST00000156633 Gm13404 lincRNA Interval_43919 chr13 38050450 38051194 + 0 NA TTS (ENSMUSG00000021428.9) protein_coding-TTS (ENSMUSG00000021428.9) 11775 ENSMUSG00000021428.9 ENSMUSG00000021428 ENSMUST00000225174 Riok1 protein_coding Interval_38598 chr12 80364963 80366519 + 0 NA TTS (ENSMUSG00000049106.7) protein_coding-TTS (ENSMUSG00000049106.7) 10951 ENSMUSG00000049106.7 ENSMUSG00000049106 ENSMUST00000218498 Dcaf5 protein_coding Interval_28919 chr11 79278273 79279478 + 0 NA Intergenic Intergenic -4982 ENSMUSG00000108822.1 ENSMUSG00000108822 ENSMUST00000208268 Gm44787 lincRNA Interval_21789 chr11 4349054 4349883 + 0 NA intron (ENSMUSG00000020419.11, intron 10 of 10) protein_coding-intron (ENSMUSG00000020419.11, intron 11 of 11) -25213 ENSMUSG00000065627.1 ENSMUSG00000065627 ENSMUST00000083693 Gm24803 snRNA Interval_17917 chr10 80817762 80819041 + 0 NA Intergenic Intergenic -4906 ENSMUSG00000020216.13 ENSMUSG00000020216 ENSMUST00000180438 Jsrp1 protein_coding Interval_77346 chr17 88106469 88108063 + 0 NA Intergenic Intergenic -18246 ENSMUSG00000058869.9 ENSMUSG00000058869 ENSMUST00000182679 Gm4832 transcribed_processed_pseudogene Interval_14091 chr10 26884809 26885190 + 0 NA intron (ENSMUSG00000039031.16, intron 6 of 10) protein_coding-intron (ENSMUSG00000039031.16, intron 10 of 14) -64741 ENSMUSG00000112751.1 ENSMUSG00000112751 ENSMUST00000220276 Gm48084 antisense Interval_48854 chr13 104062232 104062854 + 0 NA promoter-TSS (ENSMUSG00000021710.11) protein_coding-promoter-TSS (ENSMUSG00000021710.11) -27970 ENSMUSG00000021710.11 ENSMUSG00000021710 ENSMUST00000224086 Nln protein_coding Interval_120550 chr4 149301536 149302322 + 0 NA intron (ENSMUSG00000063077.15, intron 1 of 49) protein_coding-intron (ENSMUSG00000063077.15, intron 1 of 20) 5763 ENSMUSG00000063077.15 ENSMUSG00000063077 ENSMUST00000132072 Kif1b protein_coding Interval_171787 chr9 121132941 121133341 + 0 NA intron (ENSMUSG00000040936.15, intron 30 of 36) protein_coding-intron (ENSMUSG00000040936.15, intron 30 of 33) -109201 ENSMUSG00000084706.1 ENSMUSG00000084706 ENSMUST00000122757 Gm22987 misc_RNA Interval_58385 chr15 34053301 34054724 + 0 NA TTS (ENSMUSG00000115440.1) processed_pseudogene-TTS (ENSMUSG00000115440.1) 894 ENSMUSG00000115440.1 ENSMUSG00000115440 ENSMUST00000227515 Gm49091 processed_pseudogene Interval_80285 chr18 38832172 38832961 + 0 NA intron (ENSMUSG00000118193.1, intron 1 of 5) protein_coding-intron (ENSMUSG00000118193.1, intron 1 of 5) 34437 ENSMUSG00000036585.16 ENSMUSG00000036585 ENSMUST00000134864 Fgf1 protein_coding Interval_111114 chr4 12136037 12137171 + 0 NA Intergenic Intergenic -3660 ENSMUSG00000046667.14 ENSMUSG00000046667 ENSMUST00000069128 Rbm12b1 protein_coding Interval_126107 chr5 77431446 77431650 + 0 NA Intergenic Intergenic -2486 ENSMUSG00000106906.1 ENSMUSG00000106906 ENSMUST00000201510 Gm34728 lincRNA Interval_117851 chr4 126614004 126614179 + 0 NA exon (ENSMUSG00000073755.4, exon 2 of 2) protein_coding-exon (ENSMUSG00000073755.4, exon 2 of 2) 4237 ENSMUSG00000073755.4 ENSMUSG00000073755 ENSMUST00000164362 5730409E04Rik protein_coding Interval_64912 chr16 17163976 17164542 + 0 NA intron (ENSMUSG00000038965.17, intron 1 of 2) protein_coding-intron (ENSMUSG00000038965.17, intron 2 of 3) 17322 ENSMUSG00000041774.16 ENSMUSG00000041774 ENSMUST00000231539 Ydjc protein_coding Interval_5527 chr1 89576995 89577304 + 0 NA TTS (ENSMUSG00000101662.1) sense_intronic-TTS (ENSMUSG00000101662.1) 8384 ENSMUSG00000101662.1 ENSMUSG00000101662 ENSMUST00000191576 Gm28499 sense_intronic Interval_113811 chr4 58986589 58987620 + 0 NA promoter-TSS (ENSMUSG00000028378.6) protein_coding-promoter-TSS (ENSMUSG00000028378.6) 15 ENSMUSG00000028378.6 ENSMUSG00000028378 ENSMUST00000030069 Ptgr1 protein_coding Interval_108670 chr3 129976077 129976893 + 0 NA Intergenic Intergenic -6409 ENSMUSG00000027994.14 ENSMUSG00000027994 ENSMUST00000122961 Mcub protein_coding Interval_41950 chr13 5185063 5186313 + 0 NA Intergenic Intergenic 4246 ENSMUSG00000077473.1 ENSMUSG00000077473 ENSMUST00000104285 Gm24790 snoRNA Interval_159990 chr8 105622321 105623793 + 0 NA TTS (ENSMUSG00000038604.9) protein_coding-TTS (ENSMUSG00000038604.9) 7591 ENSMUSG00000089432.1 ENSMUSG00000089432 ENSMUST00000158807 Mir1966 miRNA Interval_173418 chrX 93037768 93037992 + 0 NA Intergenic Intergenic -48685 ENSMUSG00000093329.1 ENSMUSG00000093329 ENSMUST00000175588 Gm24973 miRNA Interval_3821 chr1 63261172 63261493 + 0 NA Intergenic Intergenic 11783 ENSMUSG00000087561.7 ENSMUSG00000087561 ENSMUST00000151616 Gm11608 lincRNA Interval_47239 chr13 78965279 78966134 + 0 NA Intergenic Intergenic -10914 ENSMUSG00000114557.1 ENSMUSG00000114557 ENSMUST00000225033 Gm8345 processed_pseudogene Interval_62144 chr15 88072210 88073161 + 0 NA Intergenic Intergenic -1059 ENSMUSG00000116350.1 ENSMUSG00000116350 ENSMUST00000230760 Gm35772 lincRNA Interval_95580 chr2 112463291 112463531 + 0 NA intron (ENSMUSG00000055943.5, intron 3 of 4) protein_coding-intron (ENSMUSG00000055943.5, intron 3 of 4) 5955 ENSMUSG00000077705.1 ENSMUSG00000077705 ENSMUST00000104517 n-R5s202 rRNA Interval_114424 chr4 76006695 76006999 + 0 NA intron (ENSMUSG00000028399.18, intron 21 of 30) protein_coding-intron (ENSMUSG00000028399.18, intron 20 of 29) 77610 ENSMUSG00000028399.18 ENSMUSG00000028399 ENSMUST00000134604 Ptprd protein_coding Interval_139788 chr6 108704356 108704738 + 0 NA Intergenic Intergenic 41501 ENSMUSG00000030103.11 ENSMUSG00000030103 ENSMUST00000204550 Bhlhe40 protein_coding Interval_166252 chr9 57804883 57805947 + 0 NA intron (ENSMUSG00000004661.15, intron 4 of 8) protein_coding-intron (ENSMUSG00000004661.15, intron 3 of 7) -9194 ENSMUSG00000004661.15 ENSMUSG00000004661 ENSMUST00000167670 Arid3b protein_coding Interval_159257 chr8 92387479 92388321 + 0 NA Intergenic Intergenic 30275 ENSMUSG00000031737.11 ENSMUSG00000031737 ENSMUST00000034184 Irx5 protein_coding Interval_157329 chr8 69395076 69395943 + 0 NA promoter-TSS (ENSMUSG00000110444.2) protein_coding-promoter-TSS (ENSMUSG00000110444.2) -4216 ENSMUSG00000088329.1 ENSMUSG00000088329 ENSMUST00000157704 Gm25661 ribozyme Interval_24560 chr11 34447895 34448293 + 0 NA intron (ENSMUSG00000020143.15, intron 26 of 26) protein_coding-intron (ENSMUSG00000020143.15, intron 26 of 51) 133336 ENSMUSG00000069911.11 ENSMUSG00000069911 ENSMUST00000093192 Insyn2b protein_coding Interval_107584 chr3 108687584 108687807 + 0 NA intron (ENSMUSG00000027883.15, intron 11 of 14) protein_coding-intron (ENSMUSG00000027883.15, intron 11 of 14) 14818 ENSMUSG00000027883.15 ENSMUSG00000027883 ENSMUST00000124043 Gpsm2 protein_coding Interval_146242 chr7 44929147 44930186 + 0 NA promoter-TSS (ENSMUSG00000060279.14) protein_coding-promoter-TSS (ENSMUSG00000060279.14) -24648 ENSMUSG00000059891.14 ENSMUSG00000059891 ENSMUST00000208475 Tsks protein_coding Interval_20268 chr10 116540419 116541188 + 0 NA intron (ENSMUSG00000020166.15, intron 2 of 16) protein_coding-intron (ENSMUSG00000020166.15, intron 2 of 4) -9063 ENSMUSG00000093404.1 ENSMUSG00000093404 ENSMUST00000176664 Gm25190 miRNA Interval_148271 chr7 80214969 80216531 + 0 NA intron (ENSMUSG00000030539.13, intron 4 of 13) protein_coding-intron (ENSMUSG00000030539.13, intron 5 of 14) 6356 ENSMUSG00000108389.1 ENSMUSG00000108389 ENSMUST00000206885 Gm45206 TEC Interval_137999 chr6 84062549 84063818 + 0 NA intron (ENSMUSG00000033788.15, intron 4 of 55) protein_coding-intron (ENSMUSG00000033788.15, intron 4 of 54) 31595 ENSMUSG00000108142.1 ENSMUSG00000108142 ENSMUST00000203282 Gm7498 processed_pseudogene Interval_85770 chr19 30673309 30673542 + 0 NA intron (ENSMUSG00000052920.16, intron 3 of 10) protein_coding-intron (ENSMUSG00000052920.16, intron 9 of 17) -30656 ENSMUSG00000084432.1 ENSMUSG00000084432 ENSMUST00000122483 Gm23426 misc_RNA Interval_131339 chr5 136565423 136569003 + 0 NA promoter-TSS (ENSMUSG00000029705.17) protein_coding-promoter-TSS (ENSMUSG00000029705.17) 277 ENSMUSG00000029705.17 ENSMUSG00000029705 ENSMUST00000177305 Cux1 protein_coding Interval_69071 chr16 90418758 90419054 + 0 NA intron (ENSMUSG00000053414.8, intron 1 of 10) protein_coding-intron (ENSMUSG00000053414.8, intron 1 of 10) 18362 ENSMUSG00000053414.8 ENSMUSG00000053414 ENSMUST00000231603 Hunk protein_coding Interval_61466 chr15 81792351 81793298 + 0 NA exon (ENSMUSG00000022390.11, exon 21 of 23) protein_coding-exon (ENSMUSG00000022390.11, exon 21 of 23) 9789 ENSMUSG00000097613.1 ENSMUSG00000097613 ENSMUST00000181220 Gm17597 antisense Interval_167951 chr9 74889879 74890068 + 0 NA exon (ENSMUSG00000043013.10, exon 2 of 2) protein_coding-exon (ENSMUSG00000043013.10, exon 2 of 2) 23489 ENSMUSG00000043013.10 ENSMUSG00000043013 ENSMUST00000160499 Onecut1 protein_coding Interval_130279 chr5 125382466 125384474 + 0 NA Intergenic Intergenic -5852 ENSMUSG00000072612.3 ENSMUSG00000072612 ENSMUST00000238478 Gm10382 antisense Interval_106801 chr3 100954436 100955838 + 0 NA promoter-TSS (ENSMUSG00000082000.1) processed_pseudogene-promoter-TSS (ENSMUSG00000082000.1) -304 ENSMUSG00000082000.1 ENSMUSG00000082000 ENSMUST00000122449 Gm12488 processed_pseudogene Interval_87655 chr19 54017599 54018365 + 0 NA intron (ENSMUSG00000024976.14, intron 2 of 6) protein_coding-intron (ENSMUSG00000024976.14, intron 4 of 8) -16575 ENSMUSG00000117981.1 ENSMUSG00000117981 ENSMUST00000237905 4930484I04Rik antisense Interval_91995 chr2 52387875 52388081 + 0 NA intron (ENSMUSG00000086447.2, intron 5 of 5) antisense-intron (ENSMUSG00000086447.2, intron 3 of 3) 3230 ENSMUSG00000086447.2 ENSMUSG00000086447 ENSMUST00000124622 Gm13522 antisense Interval_65694 chr16 25493009 25493319 + 0 NA Intergenic Intergenic -49891 ENSMUSG00000116828.1 ENSMUSG00000116828 ENSMUST00000232460 Gm18896 processed_pseudogene Interval_101237 chr2 179720000 179720884 + 0 NA intron (ENSMUSG00000000305.12, intron 2 of 2) protein_coding-intron (ENSMUSG00000000305.12, intron 2 of 15) -56721 ENSMUSG00000000305.12 ENSMUSG00000000305 ENSMUST00000098996 Cdh4 protein_coding Interval_152531 chr7 133922458 133922689 + 0 NA intron (ENSMUSG00000054555.11, intron 4 of 12) protein_coding-intron (ENSMUSG00000054555.11, intron 14 of 22) 17168 ENSMUSG00000093032.1 ENSMUSG00000093032 ENSMUST00000175291 Gm23631 miRNA Interval_27878 chr11 70579730 70580169 + 0 NA intron (ENSMUSG00000020827.18, intron 1 of 31) protein_coding-intron (ENSMUSG00000020827.18, intron 1 of 32) -24251 ENSMUSG00000020827.18 ENSMUSG00000020827 ENSMUST00000132208 Mink1 protein_coding Interval_29365 chr11 83451447 83451677 + 0 NA exon (ENSMUSG00000020682.17, exon 3 of 8) protein_coding-exon (ENSMUSG00000020682.17, exon 3 of 8) 11431 ENSMUSG00000035085.5 ENSMUSG00000035085 ENSMUST00000188702 1700020L24Rik protein_coding Interval_66841 chr16 38012442 38013764 + 0 NA Intergenic Intergenic 33016 ENSMUSG00000065188.1 ENSMUSG00000065188 ENSMUST00000083254 Gm25140 snRNA Interval_13924 chr10 24684187 24684608 + 0 NA intron (ENSMUSG00000037370.13, intron 1 of 21) protein_coding-intron (ENSMUSG00000037370.13, intron 1 of 24) 27600 ENSMUSG00000037370.13 ENSMUSG00000037370 ENSMUST00000142974 Enpp1 protein_coding Interval_167965 chr9 75025633 75026291 + 0 NA intron (ENSMUSG00000034858.16, intron 12 of 12) protein_coding-intron (ENSMUSG00000034858.16, intron 11 of 11) -26015 ENSMUSG00000007656.13 ENSMUSG00000007656 ENSMUST00000166549 Arpp19 protein_coding Interval_148333 chr7 80560132 80560479 + 0 NA Intergenic Intergenic 43478 ENSMUSG00000108643.1 ENSMUSG00000108643 ENSMUST00000206056 Gm44931 TEC Interval_154518 chr8 18894307 18896058 + 0 NA intron (ENSMUSG00000110530.1, intron 1 of 2) antisense-intron (ENSMUSG00000110530.1, intron 1 of 2) 7134 ENSMUSG00000110530.1 ENSMUSG00000110530 ENSMUST00000213002 Gm35934 antisense Interval_37947 chr12 73251277 73251530 + 0 NA intron (ENSMUSG00000021103.12, intron 6 of 6) protein_coding-intron (ENSMUSG00000021103.12, intron 7 of 7) 35307 ENSMUSG00000034442.11 ENSMUSG00000034442 ENSMUST00000221189 Trmt5 protein_coding Interval_12214 chr1 190885119 190885482 + 0 NA TTS (ENSMUSG00000089872.10) protein_coding-TTS (ENSMUSG00000089872.10) 14417 ENSMUSG00000089872.10 ENSMUSG00000089872 ENSMUST00000159066 Rps6kc1 protein_coding Interval_57594 chr15 12667072 12668400 + 0 NA intron (ENSMUSG00000022197.16, intron 2 of 4) protein_coding-intron (ENSMUSG00000022197.16, intron 2 of 4) -27388 ENSMUSG00000095842.1 ENSMUSG00000095842 ENSMUST00000178350 Gm24302 miRNA Interval_153464 chr7 144971105 144972423 + 0 NA Intergenic Intergenic -31839 ENSMUSG00000070348.5 ENSMUSG00000070348 ENSMUST00000135985 Ccnd1 protein_coding Interval_130934 chr5 134135924 134136241 + 0 NA intron (ENSMUSG00000015944.9, intron 2 of 4) protein_coding-intron (ENSMUSG00000015944.9, intron 4 of 8) 32178 ENSMUSG00000061979.8 ENSMUSG00000061979 ENSMUST00000156574 Rcc1l protein_coding Interval_71218 chr17 21272192 21273175 + 0 NA Intergenic Intergenic -3213 ENSMUSG00000093449.1 ENSMUSG00000093449 ENSMUST00000176997 Vmn1r-ps149 unprocessed_pseudogene Interval_142375 chr6 141135744 141135959 + 0 NA Intergenic Intergenic -2196 ENSMUSG00000107462.1 ENSMUSG00000107462 ENSMUST00000203682 Gm7384 processed_pseudogene Interval_93932 chr2 79535819 79536124 + 0 NA Intergenic Intergenic -79220 ENSMUSG00000034701.9 ENSMUSG00000034701 ENSMUST00000041099 Neurod1 protein_coding Interval_45019 chr13 51511874 51512155 + 0 NA intron (ENSMUSG00000021448.8, intron 2 of 11) protein_coding-intron (ENSMUSG00000021448.8, intron 2 of 11) 57473 ENSMUSG00000021448.8 ENSMUSG00000021448 ENSMUST00000221850 Shc3 protein_coding Interval_78370 chr18 12228598 12229233 + 0 NA intron (ENSMUSG00000024413.14, intron 1 of 2) protein_coding-intron (ENSMUSG00000024413.14, intron 1 of 24) -34645 ENSMUSG00000024413.14 ENSMUSG00000024413 ENSMUST00000144435 Npc1 protein_coding Interval_77767 chr18 3359657 3360695 + 0 NA intron (ENSMUSG00000097746.2, intron 1 of 1) processed_transcript-intron (ENSMUSG00000097746.2, intron 1 of 1) -22587 ENSMUSG00000063889.16 ENSMUSG00000063889 ENSMUST00000132334 Crem protein_coding Interval_21828 chr11 4613961 4614585 + 0 NA Intergenic Intergenic -5794 ENSMUSG00000079010.1 ENSMUSG00000079010 ENSMUST00000109941 Gm11032 protein_coding Interval_513 chr1 6812304 6812546 + 0 NA intron (ENSMUSG00000033740.17, intron 9 of 21) protein_coding-intron (ENSMUSG00000033740.17, intron 11 of 23) 51726 ENSMUSG00000103329.2 ENSMUSG00000103329 ENSMUST00000195780 Gm42492 TEC Interval_134333 chr6 25328432 25328762 + 0 NA Intergenic Intergenic -128546 ENSMUSG00000089442.1 ENSMUSG00000089442 ENSMUST00000158817 Gm22529 snoRNA Interval_167427 chr9 69092328 69092612 + 0 NA intron (ENSMUSG00000032238.17, intron 1 of 5) protein_coding-intron (ENSMUSG00000032238.17, intron 1 of 10) 271777 ENSMUSG00000086648.1 ENSMUSG00000086648 ENSMUST00000152570 Gm15511 antisense Interval_125157 chr5 64982485 64982850 + 0 NA intron (ENSMUSG00000029185.14, intron 2 of 3) protein_coding-intron (ENSMUSG00000029185.14, intron 2 of 13) 10017 ENSMUSG00000106186.1 ENSMUSG00000106186 ENSMUST00000197119 Gm43627 TEC Interval_30430 chr11 94311404 94312403 + 0 NA intron (ENSMUSG00000020863.15, intron 1 of 11) protein_coding-intron (ENSMUSG00000020863.15, intron 1 of 10) -13685 ENSMUSG00000020863.15 ENSMUSG00000020863 ENSMUST00000165620 Luc7l3 protein_coding Interval_140801 chr6 121447774 121448529 + 0 NA intron (ENSMUSG00000040797.16, intron 1 of 12) protein_coding-intron (ENSMUSG00000040797.16, intron 1 of 13) 25514 ENSMUSG00000040797.16 ENSMUSG00000040797 ENSMUST00000151397 Iqsec3 protein_coding Interval_18546 chr10 87427291 87427542 + 0 NA Intergenic Intergenic -63270 ENSMUSG00000096692.1 ENSMUSG00000096692 ENSMUST00000179147 Gm23191 snRNA Interval_161353 chr8 119912781 119913089 + 0 NA intron (ENSMUSG00000092329.1, intron 1 of 15) protein_coding-intron (ENSMUSG00000031826.20, intron 1 of 6) 2094 ENSMUSG00000092329.1 ENSMUSG00000092329 ENSMUST00000127664 Galnt2l protein_coding Interval_66946 chr16 38689893 38691343 + 0 NA intron (ENSMUSG00000022799.4, intron 1 of 1) protein_coding-intron (ENSMUSG00000022799.4, intron 1 of 11) -4749 ENSMUSG00000081651.1 ENSMUSG00000081651 ENSMUST00000122206 Gm15530 processed_pseudogene Interval_102491 chr3 27175019 27175218 + 0 NA Intergenic Intergenic -13323 ENSMUSG00000027698.14 ENSMUSG00000027698 ENSMUST00000140872 Nceh1 protein_coding Interval_29178 chr11 81115776 81116661 + 0 NA intron (ENSMUSG00000020704.13, intron 1 of 9) protein_coding-intron (ENSMUSG00000020704.13, intron 1 of 9) 43815 ENSMUSG00000085130.1 ENSMUSG00000085130 ENSMUST00000150536 Gm11417 antisense Interval_106221 chr3 94744830 94746227 + 0 NA intron (ENSMUSG00000081355.1, intron 1 of 5) unprocessed_pseudogene-intron (ENSMUSG00000081355.1, intron 1 of 5) 8185 ENSMUSG00000104881.1 ENSMUSG00000104881 ENSMUST00000195994 Gm43711 processed_pseudogene Interval_24326 chr11 32387349 32387560 + 0 NA intron (ENSMUSG00000040711.8, intron 3 of 13) protein_coding-intron (ENSMUSG00000040711.8, intron 3 of 12) 39634 ENSMUSG00000040711.8 ENSMUSG00000040711 ENSMUST00000138771 Sh3pxd2b protein_coding Interval_123802 chr5 35616877 35617143 + 0 NA Intergenic Intergenic -28247 ENSMUSG00000055061.5 ENSMUSG00000055061 ENSMUST00000124643 4931431C16Rik antisense Interval_98829 chr2 155367296 155368049 + 0 NA Intergenic Intergenic -10248 ENSMUSG00000038383.16 ENSMUSG00000038383 ENSMUST00000124419 Pigu protein_coding Interval_59610 chr15 56046694 56047525 + 0 NA intron (ENSMUSG00000115678.1, intron 2 of 2) lincRNA-intron (ENSMUSG00000115678.1, intron 2 of 2) 2723 ENSMUSG00000115678.1 ENSMUSG00000115678 ENSMUST00000228202 Gm49212 lincRNA Interval_72153 chr17 28304418 28305594 + 0 NA Intergenic Intergenic -8571 ENSMUSG00000007570.16 ENSMUSG00000007570 ENSMUST00000156569 Fance protein_coding Interval_109518 chr3 143615600 143616062 + 0 NA intron (ENSMUSG00000105511.1, intron 3 of 3) lincRNA-intron (ENSMUSG00000105511.1, intron 3 of 3) 12026 ENSMUSG00000105511.1 ENSMUSG00000105511 ENSMUST00000199230 Gm33758 lincRNA Interval_49294 chr13 110368128 110369082 + 0 NA Intergenic Intergenic -11406 ENSMUSG00000046006.6 ENSMUSG00000046006 ENSMUST00000224534 Gapt protein_coding Interval_108809 chr3 131642276 131643145 + 0 NA intron (ENSMUSG00000028032.13, intron 14 of 14) protein_coding-intron (ENSMUSG00000028032.13, intron 11 of 11) -28930 ENSMUSG00000105973.1 ENSMUSG00000105973 ENSMUST00000198636 Gm42881 TEC Interval_143346 chr7 6005445 6005856 + 0 NA Intergenic Intergenic 5360 ENSMUSG00000066850.2 ENSMUSG00000066850 ENSMUST00000086338 Vmn1r65 protein_coding Interval_89338 chr2 19451894 19452787 + 0 NA promoter-TSS (ENSMUSG00000056329.3) processed_transcript-promoter-TSS (ENSMUSG00000056329.3) -130 ENSMUSG00000056329.3 ENSMUSG00000056329 ENSMUST00000149577 1810010K12Rik processed_transcript Interval_100614 chr2 170476177 170476993 + 0 NA Intergenic Intergenic -12766 ENSMUSG00000084067.3 ENSMUSG00000084067 ENSMUST00000120455 Gm14269 processed_pseudogene Interval_77050 chr17 86034723 86035807 + 0 NA intron (ENSMUSG00000024135.10, intron 16 of 20) protein_coding-intron (ENSMUSG00000024135.10, intron 16 of 20) 5099 ENSMUSG00000024135.10 ENSMUSG00000024135 ENSMUST00000234595 Srbd1 protein_coding Interval_128790 chr5 115271780 115273904 + 0 NA promoter-TSS (ENSMUSG00000041740.16) protein_coding-promoter-TSS (ENSMUSG00000041740.16) -6853 ENSMUSG00000041733.10 ENSMUSG00000041733 ENSMUST00000129024 Coq5 protein_coding Interval_17462 chr10 77032091 77033956 + 0 NA promoter-TSS (ENSMUSG00000001436.15) protein_coding-promoter-TSS (ENSMUSG00000001436.15) 339 ENSMUSG00000001436.15 ENSMUSG00000001436 ENSMUST00000131031 Slc19a1 protein_coding Interval_170685 chr9 110085926 110086519 + 0 NA promoter-TSS (ENSMUSG00000032480.17) protein_coding-promoter-TSS (ENSMUSG00000032480.17) -707 ENSMUSG00000032480.17 ENSMUSG00000032480 ENSMUST00000197979 Dhx30 protein_coding Interval_13661 chr10 20641498 20641690 + 0 NA intron (ENSMUSG00000019990.15, intron 1 of 2) protein_coding-intron (ENSMUSG00000019990.15, intron 1 of 12) 15959 ENSMUSG00000091730.1 ENSMUSG00000091730 ENSMUST00000171194 Gm17230 processed_pseudogene Interval_103884 chr3 54421792 54422091 + 0 NA Intergenic Intergenic 38834 ENSMUSG00000027750.16 ENSMUSG00000027750 ENSMUST00000150868 Postn protein_coding Interval_27838 chr11 70339320 70339759 + 0 NA Intergenic Intergenic 6157 ENSMUSG00000018924.6 ENSMUSG00000018924 ENSMUST00000130000 Alox15 protein_coding Interval_61315 chr15 80797475 80799970 + 0 NA promoter-TSS (ENSMUSG00000047888.10) protein_coding-promoter-TSS (ENSMUSG00000047888.10) 86451 ENSMUSG00000116480.1 ENSMUSG00000116480 ENSMUST00000230620 Gm49512 sense_intronic Interval_173921 chrX 111787463 111788399 + 0 NA Intergenic Intergenic -42690 ENSMUSG00000082546.1 ENSMUSG00000082546 ENSMUST00000120202 Gm14898 processed_pseudogene Interval_96262 chr2 121039379 121039868 + 0 NA Intergenic Intergenic -2878 ENSMUSG00000023216.13 ENSMUSG00000023216 ENSMUST00000152217 Epb42 protein_coding Interval_91744 chr2 49025737 49025967 + 0 NA intron (ENSMUSG00000036792.12, intron 2 of 3) protein_coding-intron (ENSMUSG00000036792.12, intron 2 of 10) -115839 ENSMUSG00000026761.12 ENSMUSG00000026761 ENSMUST00000123271 Orc4 protein_coding Interval_80560 chr18 44169624 44169946 + 0 NA intron (ENSMUSG00000053729.4, intron 2 of 4) protein_coding-intron (ENSMUSG00000053729.4, intron 2 of 4) 5288 ENSMUSG00000053729.4 ENSMUSG00000053729 ENSMUST00000237958 Spinkl protein_coding Interval_140780 chr6 121271880 121272802 + 0 NA intron (ENSMUSG00000107736.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000107736.1, intron 1 of 1) 344 ENSMUSG00000107736.1 ENSMUSG00000107736 ENSMUST00000203718 Gm44148 lincRNA Interval_128024 chr5 110342202 110343579 + 0 NA promoter-TSS (ENSMUSG00000029503.16) protein_coding-promoter-TSS (ENSMUSG00000029503.16) 259 ENSMUSG00000029503.16 ENSMUSG00000029503 ENSMUST00000200214 P2rx2 protein_coding Interval_167223 chr9 66283158 66284173 + 0 NA Intergenic Intergenic -66785 ENSMUSG00000038664.16 ENSMUSG00000038664 ENSMUST00000130854 Herc1 protein_coding Interval_116924 chr4 118252040 118253483 + 0 NA intron (ENSMUSG00000033295.14, intron 6 of 9) protein_coding-intron (ENSMUSG00000033295.14, intron 6 of 32) 38513 ENSMUSG00000033295.14 ENSMUSG00000033295 ENSMUST00000222620 Ptprf protein_coding Interval_128536 chr5 113887871 113889480 + 0 NA intron (ENSMUSG00000004530.12, intron 1 of 1) protein_coding-intron (ENSMUSG00000004530.12, intron 1 of 10) 16223 ENSMUSG00000105071.1 ENSMUSG00000105071 ENSMUST00000200487 Gm43336 TEC Interval_118572 chr4 132569052 132569835 + 0 NA intron (ENSMUSG00000056529.7, intron 1 of 1) protein_coding-intron (ENSMUSG00000056529.7, intron 1 of 1) 5376 ENSMUSG00000056529.7 ENSMUSG00000056529 ENSMUST00000070690 Ptafr protein_coding Interval_58797 chr15 38122618 38123155 + 0 NA Intergenic Intergenic 43784 ENSMUSG00000115771.1 ENSMUSG00000115771 ENSMUST00000228698 Gm49312 bidirectional_promoter_lncRNA Interval_22918 chr11 17374677 17374990 + 0 NA Intergenic Intergenic -76414 ENSMUSG00000082797.3 ENSMUSG00000082797 ENSMUST00000117065 Gm12015 processed_pseudogene Interval_69607 chr16 94586475 94587062 + 0 NA intron (ENSMUSG00000022897.15, intron 1 of 5) protein_coding-intron (ENSMUSG00000022897.15, intron 1 of 11) 15861 ENSMUSG00000022897.15 ENSMUSG00000022897 ENSMUST00000134383 Dyrk1a protein_coding Interval_147563 chr7 68294487 68294887 + 0 NA intron (ENSMUSG00000074071.11, intron 1 of 4) protein_coding-intron (ENSMUSG00000074071.11, intron 1 of 8) 18692 ENSMUSG00000074071.11 ENSMUSG00000074071 ENSMUST00000153458 Fam169b protein_coding Interval_121134 chr4 153357648 153358722 + 0 NA Intergenic Intergenic 123994 ENSMUSG00000039546.9 ENSMUSG00000039546 ENSMUST00000149177 Ajap1 protein_coding Interval_88409 chr2 4881059 4882906 + 0 NA promoter-TSS (ENSMUSG00000026662.13) protein_coding-promoter-TSS (ENSMUSG00000026662.13) -2075 ENSMUSG00000026662.13 ENSMUSG00000026662 ENSMUST00000140045 Sephs1 protein_coding Interval_17399 chr10 76362611 76362849 + 0 NA intron (ENSMUSG00000001151.10, intron 24 of 29) protein_coding-intron (ENSMUSG00000001151.10, intron 36 of 41) -17498 ENSMUSG00000020231.15 ENSMUSG00000020231 ENSMUST00000162766 Dip2a protein_coding Interval_156680 chr8 57104312 57105340 + 0 NA Intergenic Intergenic 151997 ENSMUSG00000110043.1 ENSMUSG00000110043 ENSMUST00000211123 Gm7328 processed_pseudogene Interval_28417 chr11 75738158 75738483 + 0 NA intron (ENSMUSG00000020849.13, intron 1 of 3) protein_coding-intron (ENSMUSG00000020849.13, intron 1 of 5) -13284 ENSMUSG00000020849.13 ENSMUSG00000020849 ENSMUST00000155057 Ywhae protein_coding Interval_29875 chr11 87461573 87463076 + 0 NA promoter-TSS (ENSMUSG00000098641.1) snoRNA-promoter-TSS (ENSMUSG00000098641.1) 38 ENSMUSG00000104896.1 ENSMUSG00000104896 ENSMUST00000199460 Rnu3b4 snoRNA Interval_128825 chr5 115479408 115480464 + 0 NA promoter-TSS (ENSMUSG00000029524.16) protein_coding-promoter-TSS (ENSMUSG00000029524.16) 2 ENSMUSG00000029524.16 ENSMUSG00000029524 ENSMUST00000127479 Sirt4 protein_coding Interval_43615 chr13 34123874 34124283 + 0 NA Intergenic Intergenic 4377 ENSMUSG00000113645.1 ENSMUSG00000113645 ENSMUST00000221366 Gm47076 lincRNA Interval_61701 chr15 83488044 83488236 + 0 NA intron (ENSMUSG00000022442.16, intron 11 of 11) protein_coding-intron (ENSMUSG00000022442.16, intron 11 of 11) 22653 ENSMUSG00000022442.16 ENSMUSG00000022442 ENSMUST00000154401 Ttll1 protein_coding Interval_28264 chr11 74770294 74771469 + 0 NA promoter-TSS (ENSMUSG00000010554.14) protein_coding-promoter-TSS (ENSMUSG00000010554.14) -32443 ENSMUSG00000010554.14 ENSMUSG00000010554 ENSMUST00000134571 Mettl16 protein_coding Interval_21163 chr10 126995420 126996067 + 0 NA TTS (ENSMUSG00000065430.1) miRNA-TTS (ENSMUSG00000065430.1) 213 ENSMUSG00000065430.1 ENSMUSG00000065430 ENSMUST00000083496 Mir26a-2 miRNA Interval_113699 chr4 57723583 57724184 + 0 NA intron (ENSMUSG00000038729.24, intron 1 of 2) protein_coding-intron (ENSMUSG00000038729.24, intron 1 of 2) -38724 ENSMUSG00000089286.1 ENSMUSG00000089286 ENSMUST00000158661 Gm24277 snRNA Interval_49166 chr13 108972154 108972349 + 0 NA intron (ENSMUSG00000021699.17, intron 1 of 15) protein_coding-intron (ENSMUSG00000021699.17, intron 2 of 16) 112085 ENSMUSG00000021699.17 ENSMUSG00000021699 ENSMUST00000155459 Pde4d protein_coding Interval_121292 chr4 154765919 154766768 + 0 NA Intergenic Intergenic -71116 ENSMUSG00000046637.3 ENSMUSG00000046637 ENSMUST00000137684 Ttc34 protein_coding Interval_83008 chr18 80331494 80332530 + 0 NA intron (ENSMUSG00000059852.7, intron 1 of 1) protein_coding-intron (ENSMUSG00000059852.7, intron 2 of 3) 8677 ENSMUSG00000097593.2 ENSMUSG00000097593 ENSMUST00000181877 Gm26676 antisense Interval_105916 chr3 90077133 90077618 + 0 NA intron (ENSMUSG00000027940.18, intron 2 of 9) protein_coding-intron (ENSMUSG00000027940.18, intron 2 of 8) 7355 ENSMUSG00000077996.1 ENSMUSG00000077996 ENSMUST00000104803 Mir190b miRNA Interval_87396 chr19 48630699 48631245 + 0 NA intron (ENSMUSG00000063434.6, intron 5 of 6) protein_coding-intron (ENSMUSG00000063434.6, intron 5 of 26) -180164 ENSMUSG00000117930.1 ENSMUSG00000117930 ENSMUST00000236384 Gm50436 TEC Interval_108781 chr3 131245882 131246797 + 0 NA exon (ENSMUSG00000027984.8, exon 3 of 3) protein_coding-exon (ENSMUSG00000027984.8, exon 3 of 3) 25685 ENSMUSG00000027984.8 ENSMUSG00000027984 ENSMUST00000152427 Hadh protein_coding Interval_148930 chr7 90152479 90152703 + 0 NA intron (ENSMUSG00000039361.11, intron 1 of 3) protein_coding-intron (ENSMUSG00000039361.11, intron 1 of 20) 6643 ENSMUSG00000109498.1 ENSMUSG00000109498 ENSMUST00000207029 Gm45222 TEC Interval_21228 chr10 127324639 127324972 + 0 NA exon (ENSMUSG00000040345.10, exon 1 of 12) protein_coding-exon (ENSMUSG00000040345.10, exon 1 of 12) 2841 ENSMUSG00000040345.10 ENSMUSG00000040345 ENSMUST00000218656 Arhgap9 protein_coding Interval_165093 chr9 44515355 44515931 + 0 NA intron (ENSMUSG00000047880.15, intron 1 of 1) protein_coding-intron (ENSMUSG00000047880.15, intron 1 of 1) 10939 ENSMUSG00000047880.15 ENSMUSG00000047880 ENSMUST00000213357 Cxcr5 protein_coding Interval_139472 chr6 100401808 100403029 + 0 NA Intergenic Intergenic 92396 ENSMUSG00000087929.1 ENSMUSG00000087929 ENSMUST00000157304 Gm23234 snoRNA Interval_122728 chr5 24927580 24927895 + 0 NA intron (ENSMUSG00000028944.14, intron 2 of 13) protein_coding-intron (ENSMUSG00000028944.14, intron 4 of 15) -19228 ENSMUSG00000028944.14 ENSMUSG00000028944 ENSMUST00000148531 Prkag2 protein_coding Interval_23610 chr11 23770287 23771810 + 0 NA promoter-TSS (ENSMUSG00000020275.9) protein_coding-promoter-TSS (ENSMUSG00000020275.9) -78 ENSMUSG00000020275.9 ENSMUSG00000020275 ENSMUST00000102864 Rel protein_coding Interval_118152 chr4 129250806 129252693 + 0 NA intron (ENSMUSG00000050390.12, intron 1 of 3) protein_coding-intron (ENSMUSG00000050390.12, intron 1 of 3) -10216 ENSMUSG00000087575.7 ENSMUSG00000087575 ENSMUST00000150171 Gm12976 lincRNA Interval_172327 chrX 13041649 13042338 + 0 NA promoter-TSS (ENSMUSG00000087424.1) processed_transcript-promoter-TSS (ENSMUSG00000087424.1) -58 ENSMUSG00000087424.1 ENSMUSG00000087424 ENSMUST00000130099 5730405O15Rik processed_transcript Interval_38973 chr12 84207906 84208600 + 0 NA intron (ENSMUSG00000042507.15, intron 1 of 12) protein_coding-intron (ENSMUSG00000042507.15, intron 1 of 12) 7884 ENSMUSG00000113094.1 ENSMUSG00000113094 ENSMUST00000220851 Gm47447 sense_intronic Interval_46601 chr13 67491699 67491917 + 0 NA exon (ENSMUSG00000097565.1, exon 6 of 6) protein_coding-exon (ENSMUSG00000097565.1, exon 6 of 6) -7596 ENSMUSG00000059839.9 ENSMUSG00000059839 ENSMUST00000223868 Zfp874b protein_coding Interval_43208 chr13 25208699 25208891 + 0 NA exon (ENSMUSG00000035910.15, exon 10 of 10) protein_coding-exon (ENSMUSG00000035910.15, exon 10 of 10) 21341 ENSMUSG00000035910.15 ENSMUSG00000035910 ENSMUST00000160363 Dcdc2a protein_coding Interval_56405 chr14 118542637 118543533 + 0 NA intron (ENSMUSG00000032849.14, intron 19 of 29) protein_coding-intron (ENSMUSG00000032849.14, intron 20 of 30) -20987 ENSMUSG00000115075.1 ENSMUSG00000115075 ENSMUST00000227627 Gm49033 processed_pseudogene Interval_2191 chr1 36929953 36930298 + 0 NA intron (ENSMUSG00000026116.11, intron 1 of 5) protein_coding-intron (ENSMUSG00000026116.11, intron 1 of 40) -3777 ENSMUSG00000103159.1 ENSMUSG00000103159 ENSMUST00000194249 F830112A20Rik TEC Interval_142108 chr6 137185691 137185937 + 0 NA Intergenic Intergenic -38885 ENSMUSG00000107567.1 ENSMUSG00000107567 ENSMUST00000203679 4930480K02Rik TEC Interval_129476 chr5 120447368 120448485 + 0 NA Intergenic Intergenic -16159 ENSMUSG00000098649.2 ENSMUSG00000098649 ENSMUST00000185026 Gm27199 antisense Interval_121263 chr4 154506865 154507340 + 0 NA intron (ENSMUSG00000039410.16, intron 2 of 2) protein_coding-intron (ENSMUSG00000039410.16, intron 2 of 16) -43180 ENSMUSG00000086565.1 ENSMUSG00000086565 ENSMUST00000143888 Gm13133 antisense Interval_27626 chr11 69109773 69111266 + 0 NA TTS (ENSMUSG00000020893.17) protein_coding-TTS (ENSMUSG00000020893.17) -9885 ENSMUSG00000023781.2 ENSMUSG00000023781 ENSMUST00000024543 Hes7 protein_coding Interval_128145 chr5 111276975 111277559 + 0 NA exon (ENSMUSG00000033209.17, exon 17 of 24) protein_coding-exon (ENSMUSG00000033209.17, exon 17 of 24) -2173 ENSMUSG00000099130.1 ENSMUSG00000099130 ENSMUST00000183861 Gm27602 misc_RNA Interval_68653 chr16 83608805 83609001 + 0 NA Intergenic Intergenic 43376 ENSMUSG00000116533.1 ENSMUSG00000116533 ENSMUST00000232058 Gm49561 processed_pseudogene Interval_1231 chr1 17686850 17687391 + 0 NA intron (ENSMUSG00000085125.7, intron 6 of 6) antisense-intron (ENSMUSG00000085125.7, intron 6 of 6) -39939 ENSMUSG00000025776.13 ENSMUSG00000025776 ENSMUST00000095075 Crispld1 protein_coding Interval_109045 chr3 135444702 135445066 + 0 NA exon (ENSMUSG00000078578.9, exon 1 of 1) protein_coding-exon (ENSMUSG00000078578.9, exon 1 of 1) -6219 ENSMUSG00000097032.2 ENSMUSG00000097032 ENSMUST00000181619 4930539J05Rik antisense Interval_92137 chr2 53863133 53863357 + 0 NA Intergenic Intergenic -162290 ENSMUSG00000088628.1 ENSMUSG00000088628 ENSMUST00000158003 Gm23315 snoRNA Interval_161861 chr8 123267575 123269215 + 0 NA TTS (ENSMUSG00000032815.16) protein_coding-TTS (ENSMUSG00000032815.16) 1901 ENSMUSG00000032815.16 ENSMUSG00000032815 ENSMUST00000150318 Fanca protein_coding Interval_117264 chr4 121114840 121115519 + 0 NA exon (ENSMUSG00000081423.1, exon 1 of 1) processed_pseudogene-exon (ENSMUSG00000081423.1, exon 1 of 1) 126 ENSMUSG00000081423.1 ENSMUSG00000081423 ENSMUST00000121696 Gm12882 processed_pseudogene Interval_95194 chr2 104682982 104683296 + 0 NA intron (ENSMUSG00000027175.10, intron 9 of 9) protein_coding-intron (ENSMUSG00000027175.10, intron 9 of 9) 23328 ENSMUSG00000027175.10 ENSMUSG00000027175 ENSMUST00000132600 Tcp11l1 protein_coding Interval_90835 chr2 32895715 32898446 + 0 NA intron (ENSMUSG00000026796.16, intron 1 of 2) protein_coding-intron (ENSMUSG00000026796.16, intron 1 of 13) -17631 ENSMUSG00000026796.16 ENSMUSG00000026796 ENSMUST00000151607 Fam129b protein_coding Interval_58450 chr15 34618318 34618582 + 0 NA intron (ENSMUSG00000038879.8, intron 3 of 4) protein_coding-intron (ENSMUSG00000038879.8, intron 4 of 10) -35679 ENSMUSG00000038879.8 ENSMUSG00000038879 ENSMUST00000227126 Nipal2 protein_coding Interval_56744 chr14 121824508 121825958 + 0 NA Intergenic Intergenic -5781 ENSMUSG00000115443.1 ENSMUSG00000115443 ENSMUST00000228932 Gm9395 processed_pseudogene Interval_42566 chr13 15517592 15517877 + 0 NA intron (ENSMUSG00000021318.15, intron 2 of 9) protein_coding-intron (ENSMUSG00000021318.15, intron 2 of 14) -53998 ENSMUSG00000097806.3 ENSMUSG00000097806 ENSMUST00000193256 Gm6556 processed_transcript Interval_117586 chr4 124856431 124857043 + 0 NA exon (ENSMUSG00000042763.9, exon 4 of 4) protein_coding-exon (ENSMUSG00000042763.9, exon 4 of 4) 4842 ENSMUSG00000028889.17 ENSMUSG00000028889 ENSMUST00000173434 Yrdc protein_coding Interval_37137 chr12 58852395 58853154 + 0 NA Intergenic Intergenic 38891 ENSMUSG00000112785.1 ENSMUSG00000112785 ENSMUST00000220177 Gm47645 lincRNA Interval_149129 chr7 94385607 94386019 + 0 NA intron (ENSMUSG00000108532.1, intron 2 of 2) lincRNA-intron (ENSMUSG00000108532.1, intron 2 of 2) -13241 ENSMUSG00000108315.1 ENSMUSG00000108315 ENSMUST00000206678 Gm44601 lincRNA Interval_157609 chr8 71687349 71687982 + 0 NA intron (ENSMUSG00000031805.17, intron 20 of 21) protein_coding-intron (ENSMUSG00000031805.17, intron 23 of 24) -1549 ENSMUSG00000079019.2 ENSMUSG00000079019 ENSMUST00000034261 Insl3 protein_coding Interval_58396 chr15 34134779 34135774 + 0 NA TTS (ENSMUSG00000022255.16) protein_coding-TTS (ENSMUSG00000022255.16) 4100 ENSMUSG00000089072.1 ENSMUSG00000089072 ENSMUST00000158447 Gm24500 snoRNA Interval_29048 chr11 80052365 80052950 + 0 NA intron (ENSMUSG00000017561.16, intron 5 of 6) protein_coding-intron (ENSMUSG00000017561.16, intron 6 of 7) 28204 ENSMUSG00000017561.16 ENSMUSG00000017561 ENSMUST00000178280 Crlf3 protein_coding Interval_4456 chr1 74303548 74304423 + 0 NA exon (ENSMUSG00000006301.17, exon 1 of 11) protein_coding-exon (ENSMUSG00000006301.17, exon 1 of 11) 230 ENSMUSG00000006301.17 ENSMUSG00000006301 ENSMUST00000141560 Tmbim1 protein_coding Interval_24296 chr11 32161581 32162896 + 0 NA Intergenic Intergenic -22767 ENSMUSG00000081613.1 ENSMUSG00000081613 ENSMUST00000121140 Gm12109 processed_pseudogene Interval_119361 chr4 137164028 137165120 + 0 NA exon (ENSMUSG00000085833.2, exon 1 of 4) lincRNA-exon (ENSMUSG00000085833.2, exon 1 of 4) 492 ENSMUSG00000085833.2 ENSMUSG00000085833 ENSMUST00000151040 Gm13003 lincRNA Interval_39356 chr12 86888003 86889173 + 0 NA Intergenic Intergenic -3790 ENSMUSG00000034168.7 ENSMUSG00000034168 ENSMUST00000038422 Irf2bpl protein_coding Interval_170085 chr9 104315385 104316801 + 0 NA intron (ENSMUSG00000032561.15, intron 6 of 8) protein_coding-intron (ENSMUSG00000032561.15, intron 6 of 10) 21655 ENSMUSG00000032561.15 ENSMUSG00000032561 ENSMUST00000215852 Acpp protein_coding Interval_80294 chr18 38913984 38914500 + 0 NA intron (ENSMUSG00000117994.1, intron 2 of 2) protein_coding-intron (ENSMUSG00000036585.16, intron 1 of 3) 21525 ENSMUSG00000117994.1 ENSMUSG00000117994 ENSMUST00000156167 Gm5820 lincRNA Interval_16580 chr10 64224144 64224498 + 0 NA intron (ENSMUSG00000060843.11, intron 7 of 17) protein_coding-intron (ENSMUSG00000060843.11, intron 6 of 16) 80423 ENSMUSG00000089003.1 ENSMUSG00000089003 ENSMUST00000158378 Gm23854 snRNA Interval_47636 chr13 90515991 90516190 + 0 NA Intergenic Intergenic -67239 ENSMUSG00000094277.2 ENSMUSG00000094277 ENSMUST00000179654 Gm21726 processed_pseudogene Interval_67130 chr16 43707670 43707914 + 0 NA intron (ENSMUSG00000116684.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000116684.1, intron 1 of 2) 3040 ENSMUSG00000116684.1 ENSMUSG00000116684 ENSMUST00000232267 Gm49735 lincRNA Interval_10940 chr1 177346623 177347403 + 0 NA Intergenic Intergenic 77661 ENSMUSG00000103633.1 ENSMUSG00000103633 ENSMUST00000195582 Gm38328 processed_pseudogene Interval_132767 chr5 147749752 147750346 + 0 NA TTS (ENSMUSG00000106845.1) lincRNA-TTS (ENSMUSG00000106845.1) 4533 ENSMUSG00000106845.1 ENSMUSG00000106845 ENSMUST00000202338 Gm43156 lincRNA Interval_114722 chr4 84384500 84385387 + 0 NA intron (ENSMUSG00000028487.18, intron 5 of 5) protein_coding-intron (ENSMUSG00000028487.18, intron 6 of 7) 44181 ENSMUSG00000083743.1 ENSMUSG00000083743 ENSMUST00000119071 Gm12421 processed_pseudogene Interval_107418 chr3 107462246 107462461 + 0 NA Intergenic Intergenic -2801 ENSMUSG00000027895.10 ENSMUSG00000027895 ENSMUST00000238670 Kcnc4 protein_coding Interval_25892 chr11 52364079 52364771 + 0 NA intron (ENSMUSG00000020402.11, intron 1 of 9) protein_coding-intron (ENSMUSG00000020402.11, intron 1 of 8) -9675 ENSMUSG00000020402.11 ENSMUSG00000020402 ENSMUST00000153339 Vdac1 protein_coding Interval_142612 chr6 144264218 144264881 + 0 NA intron (ENSMUSG00000041540.16, intron 4 of 6) protein_coding-intron (ENSMUSG00000041540.16, intron 4 of 13) -54981 ENSMUSG00000041540.16 ENSMUSG00000041540 ENSMUST00000150087 Sox5 protein_coding Interval_98730 chr2 154549231 154550102 + 0 NA exon (ENSMUSG00000038523.10, exon 3 of 3) protein_coding-exon (ENSMUSG00000038523.10, exon 3 of 3) -2110 ENSMUSG00000078129.3 ENSMUSG00000078129 ENSMUST00000104928 Actl10 protein_coding Interval_90428 chr2 30383566 30383756 + 0 NA exon (ENSMUSG00000026858.18, exon 15 of 16) protein_coding-exon (ENSMUSG00000026858.18, exon 15 of 16) 1717 ENSMUSG00000026858.18 ENSMUSG00000026858 ENSMUST00000176517 Miga2 protein_coding Interval_22196 chr11 7076810 7077226 + 0 NA intron (ENSMUSG00000020431.5, intron 1 of 19) protein_coding-intron (ENSMUSG00000020431.5, intron 1 of 19) -82864 ENSMUSG00000020431.5 ENSMUSG00000020431 ENSMUST00000135398 Adcy1 protein_coding Interval_13605 chr10 20156654 20157700 + 0 NA intron (ENSMUSG00000019996.17, intron 1 of 6) protein_coding-intron (ENSMUSG00000019996.17, intron 1 of 17) -13811 ENSMUSG00000019996.17 ENSMUSG00000019996 ENSMUST00000216308 Map7 protein_coding Interval_156742 chr8 57767673 57767935 + 0 NA Intergenic Intergenic 68030 ENSMUSG00000110162.1 ENSMUSG00000110162 ENSMUST00000209274 Gm45356 lincRNA Interval_174083 chrX 134533817 134534267 + 0 NA Intergenic Intergenic 7823 ENSMUSG00000048007.4 ENSMUSG00000048007 ENSMUST00000054213 Timm8a1 protein_coding Interval_162444 chr8 128771813 128772054 + 0 NA TTS (ENSMUSG00000087870.1) snoRNA-TTS (ENSMUSG00000087870.1) 763 ENSMUSG00000087870.1 ENSMUSG00000087870 ENSMUST00000157245 Gm26100 snoRNA Interval_146017 chr7 43232281 43232557 + 0 NA Intergenic Intergenic 18380 ENSMUSG00000074887.4 ENSMUSG00000074887 ENSMUST00000163106 EU599041 lincRNA Interval_3517 chr1 59247559 59248413 + 0 NA Intergenic Intergenic -28860 ENSMUSG00000026024.14 ENSMUSG00000026024 ENSMUST00000188469 Als2 protein_coding Interval_168242 chr9 78136059 78136399 + 0 NA intron (ENSMUSG00000009828.15, intron 3 of 13) protein_coding-intron (ENSMUSG00000009828.15, intron 3 of 13) 23386 ENSMUSG00000009828.15 ENSMUSG00000009828 ENSMUST00000142402 Cilk1 protein_coding Interval_74054 chr17 46307683 46308653 + 0 NA intron (ENSMUSG00000032842.13, intron 13 of 20) protein_coding-intron (ENSMUSG00000032842.13, intron 13 of 19) 10747 ENSMUSG00000047428.14 ENSMUSG00000047428 ENSMUST00000170271 Dlk2 protein_coding Interval_111218 chr4 14929426 14931191 + 0 NA promoter-TSS (ENSMUSG00000086587.7) antisense-promoter-TSS (ENSMUSG00000086587.7) -368 ENSMUSG00000086587.7 ENSMUSG00000086587 ENSMUST00000152024 Gm11837 antisense Interval_62604 chr15 95401404 95402363 + 0 NA intron (ENSMUSG00000022454.17, intron 9 of 20) protein_coding-intron (ENSMUSG00000022454.17, intron 10 of 20) 126295 ENSMUSG00000022454.17 ENSMUSG00000022454 ENSMUST00000075275 Nell2 protein_coding Interval_114070 chr4 62999784 63000131 + 0 NA intron (ENSMUSG00000028358.15, intron 1 of 14) protein_coding-intron (ENSMUSG00000028358.15, intron 1 of 11) 60045 ENSMUSG00000083635.1 ENSMUSG00000083635 ENSMUST00000120214 Gm11480 processed_pseudogene Interval_54457 chr14 69897548 69898039 + 0 NA intron (ENSMUSG00000022085.4, intron 3 of 6) protein_coding-intron (ENSMUSG00000022085.4, intron 3 of 6) 57373 ENSMUSG00000022085.4 ENSMUSG00000022085 ENSMUST00000022678 Pebp4 protein_coding Interval_136510 chr6 55066970 55067335 + 0 NA intron (ENSMUSG00000029777.10, intron 10 of 16) protein_coding-intron (ENSMUSG00000029777.10, intron 10 of 16) 19089 ENSMUSG00000029777.10 ENSMUSG00000029777 ENSMUST00000203334 Gars protein_coding Interval_144365 chr7 24693189 24693779 + 0 NA Intergenic Intergenic 9178 ENSMUSG00000108768.1 ENSMUSG00000108768 ENSMUST00000206192 Gm44971 processed_pseudogene Interval_155356 chr8 32220703 32222078 + 0 NA intron (ENSMUSG00000062991.9, intron 1 of 12) protein_coding-intron (ENSMUSG00000062991.9, intron 1 of 8) 35261 ENSMUSG00000089370.1 ENSMUSG00000089370 ENSMUST00000158745 Gm22140 snRNA Interval_85721 chr19 30028698 30031245 + 0 NA promoter-TSS (ENSMUSG00000024817.13) protein_coding-promoter-TSS (ENSMUSG00000024817.13) 26181 ENSMUSG00000024815.5 ENSMUSG00000024815 ENSMUST00000025727 Trpd52l3 protein_coding Interval_141019 chr6 124424306 124425861 + 0 NA Intergenic Intergenic 8417 ENSMUSG00000008153.12 ENSMUSG00000008153 ENSMUST00000150774 Clstn3 protein_coding Interval_27912 chr11 70808343 70809879 + 0 NA intron (ENSMUSG00000057135.12, intron 1 of 4) protein_coding-intron (ENSMUSG00000057135.12, intron 1 of 4) 3475 ENSMUSG00000057135.12 ENSMUSG00000057135 ENSMUST00000074572 Scimp protein_coding Interval_138866 chr6 92749331 92749614 + 0 NA Intergenic Intergenic -78160 ENSMUSG00000048636.7 ENSMUSG00000048636 ENSMUST00000133858 A730049H05Rik protein_coding Interval_128186 chr5 111592952 111593548 + 0 NA promoter-TSS (ENSMUSG00000104833.1) lincRNA-promoter-TSS (ENSMUSG00000104833.1) -366 ENSMUSG00000104833.1 ENSMUSG00000104833 ENSMUST00000198964 Gm42489 lincRNA Interval_153124 chr7 141491003 141491541 + 0 NA promoter-TSS (ENSMUSG00000025511.15) protein_coding-promoter-TSS (ENSMUSG00000025511.15) 9208 ENSMUSG00000025511.15 ENSMUSG00000025511 ENSMUST00000130402 Tspan4 protein_coding Interval_77119 chr17 86697979 86698170 + 0 NA Intergenic Intergenic 5333 ENSMUSG00000087710.1 ENSMUSG00000087710 ENSMUST00000157085 Gm22235 snRNA Interval_61226 chr15 80097385 80098567 + 0 NA exon (ENSMUSG00000022415.12, exon 1 of 3) protein_coding-exon (ENSMUSG00000022415.12, exon 1 of 3) 106 ENSMUSG00000022415.12 ENSMUSG00000022415 ENSMUST00000135727 Syngr1 protein_coding Interval_27135 chr11 63228657 63228897 + 0 NA Intergenic Intergenic 12698 ENSMUSG00000083052.1 ENSMUSG00000083052 ENSMUST00000117347 Gm12285 processed_pseudogene Interval_81366 chr18 59387540 59388278 + 0 NA intron (ENSMUSG00000058152.8, intron 2 of 8) protein_coding-intron (ENSMUSG00000058152.8, intron 2 of 2) -191721 ENSMUSG00000098287.1 ENSMUSG00000098287 ENSMUST00000183687 Mir6355 miRNA Interval_109826 chr3 148497385 148497635 + 0 NA Intergenic Intergenic 42569 ENSMUSG00000105718.1 ENSMUSG00000105718 ENSMUST00000197937 Gm43576 TEC Interval_157998 chr8 77754657 77755196 + 0 NA intron (ENSMUSG00000086451.8, intron 2 of 4) processed_transcript-intron (ENSMUSG00000086451.8, intron 5 of 7) -30462 ENSMUSG00000031616.7 ENSMUSG00000031616 ENSMUST00000146561 Ednra protein_coding Interval_144702 chr7 27621277 27623459 + 0 NA intron (ENSMUSG00000004056.15, intron 4 of 14) protein_coding-intron (ENSMUSG00000004056.15, intron 4 of 13) -20730 ENSMUSG00000118518.1 ENSMUSG00000118518 ENSMUST00000239103 AC074312.1 unitary_pseudogene Interval_49280 chr13 110131533 110132257 + 0 NA intron (ENSMUSG00000021700.10, intron 3 of 4) protein_coding-intron (ENSMUSG00000021700.10, intron 3 of 4) 148255 ENSMUSG00000021700.10 ENSMUSG00000021700 ENSMUST00000226040 Rab3c protein_coding Interval_55852 chr14 101506987 101507618 + 0 NA promoter-TSS (ENSMUSG00000033083.16) protein_coding-promoter-TSS (ENSMUSG00000033083.16) 65712 ENSMUSG00000115319.1 ENSMUSG00000115319 ENSMUST00000228293 Gm34417 processed_pseudogene Interval_16575 chr10 64111533 64111741 + 0 NA intron (ENSMUSG00000060843.11, intron 7 of 17) protein_coding-intron (ENSMUSG00000060843.11, intron 6 of 16) -21390 ENSMUSG00000042846.8 ENSMUSG00000042846 ENSMUST00000133588 Lrrtm3 protein_coding Interval_57836 chr15 22811478 22812256 + 0 NA intron (ENSMUSG00000040420.15, intron 1 of 6) protein_coding-intron (ENSMUSG00000040420.15, intron 1 of 6) -97037 ENSMUSG00000021927.7 ENSMUSG00000021927 ENSMUST00000022493 Hnrnpa1l2-ps2 processed_pseudogene Interval_26970 chr11 61967458 61967766 + 0 NA intron (ENSMUSG00000042331.13, intron 1 of 14) protein_coding-intron (ENSMUSG00000042331.13, intron 1 of 2) 6738 ENSMUSG00000083212.3 ENSMUSG00000083212 ENSMUST00000120062 Gm12274 processed_pseudogene Interval_52466 chr14 46745570 46746456 + 0 NA exon (ENSMUSG00000115690.1, exon 1 of 2) lincRNA-exon (ENSMUSG00000115690.1, exon 1 of 2) 386 ENSMUSG00000115690.1 ENSMUSG00000115690 ENSMUST00000226531 Gm48924 lincRNA Interval_166688 chr9 61946099 61947146 + 0 NA exon (ENSMUSG00000032254.10, exon 1 of 23) protein_coding-exon (ENSMUSG00000032254.10, exon 1 of 23) -21501 ENSMUSG00000032254.10 ENSMUSG00000032254 ENSMUST00000215404 Kif23 protein_coding Interval_99595 chr2 163438289 163439628 + 0 NA intron (ENSMUSG00000017943.15, intron 1 of 4) protein_coding-intron (ENSMUSG00000017943.15, intron 1 of 5) 425 ENSMUSG00000017943.15 ENSMUSG00000017943 ENSMUST00000137070 Gdap1l1 protein_coding Interval_66894 chr16 38385236 38385560 + 0 NA Intergenic Intergenic 13400 ENSMUSG00000022803.12 ENSMUSG00000022803 ENSMUST00000146342 Popdc2 protein_coding Interval_54926 chr14 76279043 76280001 + 0 NA Intergenic Intergenic 28065 ENSMUSG00000115625.1 ENSMUSG00000115625 ENSMUST00000227933 2900040C04Rik lincRNA Interval_101022 chr2 174294503 174296286 + 0 NA promoter-TSS (ENSMUSG00000086537.7) antisense-promoter-TSS (ENSMUSG00000086537.7) 42 ENSMUSG00000086537.7 ENSMUSG00000086537 ENSMUST00000143738 Gnasas1 antisense Interval_172701 chrX 43584435 43584709 + 0 NA Intergenic Intergenic 5453 ENSMUSG00000083598.1 ENSMUSG00000083598 ENSMUST00000117068 Gm14579 processed_pseudogene Interval_88327 chr2 3798889 3800480 + 0 NA Intergenic Intergenic -44507 ENSMUSG00000085205.1 ENSMUSG00000085205 ENSMUST00000131044 Gm13185 antisense Interval_113488 chr4 55314564 55316902 + 0 NA Intergenic Intergenic -15888 ENSMUSG00000077403.2 ENSMUSG00000077403 ENSMUST00000104215 Gm25419 snoRNA Interval_94808 chr2 94524333 94524708 + 0 NA Intergenic Intergenic 13549 ENSMUSG00000106196.1 ENSMUSG00000106196 ENSMUST00000116740 Gm44461 miRNA Interval_127751 chr5 107359070 107360175 + 0 NA promoter-TSS (ENSMUSG00000029279.15) protein_coding-promoter-TSS (ENSMUSG00000029279.15) -215 ENSMUSG00000029279.15 ENSMUSG00000029279 ENSMUST00000162804 Brdt protein_coding Interval_11286 chr1 180757618 180757852 + 0 NA Intergenic Intergenic -1899 ENSMUSG00000103649.1 ENSMUSG00000103649 ENSMUST00000192748 Gm37768 antisense Interval_113743 chr4 58017930 58018507 + 0 NA Intergenic Intergenic -9094 ENSMUSG00000038709.15 ENSMUSG00000038709 ENSMUST00000239406 Txndc8 protein_coding Interval_134749 chr6 31197571 31198670 + 0 NA intron (ENSMUSG00000044471.12, intron 1 of 3) lincRNA-intron (ENSMUSG00000044471.12, intron 1 of 3) 18246 ENSMUSG00000044471.12 ENSMUSG00000044471 ENSMUST00000229779 Lncpint lincRNA Interval_15007 chr10 41880910 41882164 + 0 NA intron (ENSMUSG00000038332.13, intron 1 of 9) protein_coding-intron (ENSMUSG00000038332.13, intron 1 of 9) -16836 ENSMUSG00000038332.13 ENSMUSG00000038332 ENSMUST00000214835 Sesn1 protein_coding Interval_57007 chr15 4005253 4005515 + 0 NA intron (ENSMUSG00000097662.1, intron 2 of 2) lincRNA-intron (ENSMUSG00000097662.1, intron 2 of 2) 9345 ENSMUSG00000097662.1 ENSMUSG00000097662 ENSMUST00000180518 Gm2093 lincRNA Interval_112211 chr4 35810026 35810269 + 0 NA intron (ENSMUSG00000045083.14, intron 1 of 2) protein_coding-intron (ENSMUSG00000045083.14, intron 1 of 2) 35057 ENSMUSG00000045083.14 ENSMUSG00000045083 ENSMUST00000125128 Lingo2 protein_coding Interval_93306 chr2 71812578 71814333 + 0 NA intron (ENSMUSG00000027111.16, intron 1 of 25) protein_coding-intron (ENSMUSG00000027111.16, intron 1 of 25) 26316 ENSMUSG00000027111.16 ENSMUSG00000027111 ENSMUST00000139760 Itga6 protein_coding Interval_169600 chr9 99389231 99390090 + 0 NA TTS (ENSMUSG00000032470.17) protein_coding-TTS (ENSMUSG00000032470.17) 5035 ENSMUSG00000032470.17 ENSMUSG00000032470 ENSMUST00000123771 Mras protein_coding Interval_39556 chr12 90564256 90565243 + 0 NA Intergenic Intergenic 23896 ENSMUSG00000114032.1 ENSMUSG00000114032 ENSMUST00000222569 Gm2139 processed_pseudogene Interval_156892 chr8 61506622 61506884 + 0 NA TTS (ENSMUSG00000031641.14) protein_coding-TTS (ENSMUSG00000031641.14) 9147 ENSMUSG00000058056.16 ENSMUSG00000058056 ENSMUST00000123523 Palld protein_coding Interval_127187 chr5 100919231 100920069 + 0 NA Intergenic Intergenic -5943 ENSMUSG00000106255.1 ENSMUSG00000106255 ENSMUST00000199211 Gm36793 lincRNA Interval_81164 chr18 55259941 55261731 + 0 NA Intergenic Intergenic -78676 ENSMUSG00000104455.1 ENSMUSG00000104455 ENSMUST00000192496 Gm37828 TEC Interval_84448 chr19 10979314 10980279 + 0 NA intron (ENSMUSG00000067571.4, intron 6 of 6) protein_coding-intron (ENSMUSG00000067571.4, intron 6 of 6) -5151 ENSMUSG00000024731.15 ENSMUSG00000024731 ENSMUST00000190246 Ms4a10 protein_coding Interval_159548 chr8 95387518 95387973 + 0 NA Intergenic Intergenic 17874 ENSMUSG00000031790.8 ENSMUSG00000031790 ENSMUST00000212235 Mmp15 protein_coding Interval_117393 chr4 123426637 123427515 + 0 NA intron (ENSMUSG00000028649.21, intron 53 of 93) protein_coding-intron (ENSMUSG00000028649.21, intron 52 of 92) -8541 ENSMUSG00000081528.1 ENSMUSG00000081528 ENSMUST00000121747 Gm12924 processed_pseudogene Interval_144874 chr7 28716699 28717313 + 0 NA exon (ENSMUSG00000030598.15, exon 1 of 7) protein_coding-exon (ENSMUSG00000030598.15, exon 1 of 7) -15494 ENSMUSG00000030598.15 ENSMUSG00000030598 ENSMUST00000167118 Fbxo17 protein_coding Interval_68523 chr16 78364709 78365075 + 0 NA TTS (ENSMUSG00000022863.15) protein_coding-TTS (ENSMUSG00000022863.15) 8444 ENSMUSG00000022863.15 ENSMUSG00000022863 ENSMUST00000148124 Btg3 protein_coding Interval_99932 chr2 165987030 165987629 + 0 NA intron (ENSMUSG00000087351.1, intron 2 of 2) lincRNA-intron (ENSMUSG00000087351.1, intron 2 of 2) -1405 ENSMUSG00000084816.1 ENSMUSG00000084816 ENSMUST00000130022 Platr29 lincRNA Interval_83080 chr18 81109684 81109874 + 0 NA Intergenic Intergenic 26715 ENSMUSG00000118262.1 ENSMUSG00000118262 ENSMUST00000237649 Gm50423 lincRNA Interval_129920 chr5 123066476 123066907 + 0 NA TTS (ENSMUSG00000080836.1) processed_pseudogene-TTS (ENSMUSG00000080836.1) 449 ENSMUSG00000080836.1 ENSMUSG00000080836 ENSMUST00000119611 Gm6444 processed_pseudogene Interval_124698 chr5 53389972 53390224 + 0 NA Intergenic Intergenic -18324 ENSMUSG00000106808.1 ENSMUSG00000106808 ENSMUST00000200904 Gm42745 lincRNA Interval_142094 chr6 137117765 137118625 + 0 NA intron (ENSMUSG00000030222.13, intron 2 of 4) protein_coding-intron (ENSMUSG00000030222.13, intron 2 of 4) 21868 ENSMUSG00000030222.13 ENSMUSG00000030222 ENSMUST00000149100 Rerg protein_coding Interval_133582 chr6 7090147 7090780 + 0 NA Intergenic Intergenic 103709 ENSMUSG00000098421.1 ENSMUSG00000098421 ENSMUST00000184890 Gm27190 processed_pseudogene Interval_84278 chr19 9426660 9426892 + 0 NA Intergenic Intergenic -86790 ENSMUSG00000101398.1 ENSMUSG00000101398 ENSMUST00000185690 Gm2617 unprocessed_pseudogene Interval_153212 chr7 142481158 142482226 + 0 NA intron (ENSMUSG00000018819.10, intron 1 of 10) protein_coding-intron (ENSMUSG00000018819.10, intron 1 of 10) -1712 ENSMUSG00000018819.10 ENSMUSG00000018819 ENSMUST00000142408 Lsp1 protein_coding Interval_149662 chr7 100492773 100494425 + 0 NA promoter-TSS (ENSMUSG00000033685.13) protein_coding-promoter-TSS (ENSMUSG00000033685.13) 245 ENSMUSG00000033685.13 ENSMUSG00000033685 ENSMUST00000149808 Ucp2 protein_coding Interval_158975 chr8 88361048 88362767 + 0 NA exon (ENSMUSG00000031660.13, exon 1 of 17) protein_coding-exon (ENSMUSG00000031660.13, exon 1 of 17) -19073 ENSMUSG00000031660.13 ENSMUSG00000031660 ENSMUST00000135471 Brd7 protein_coding Interval_79050 chr18 24175807 24176027 + 0 NA Intergenic Intergenic -53964 ENSMUSG00000047989.11 ENSMUSG00000047989 ENSMUST00000125169 Ino80c protein_coding Interval_65278 chr16 21194948 21195734 + 0 NA Intergenic Intergenic -15183 ENSMUSG00000005958.15 ENSMUSG00000005958 ENSMUST00000160053 Ephb3 protein_coding Interval_56366 chr14 118115168 118115784 + 0 NA intron (ENSMUSG00000022130.10, intron 9 of 11) protein_coding-intron (ENSMUSG00000022130.10, intron 9 of 11) 17279 ENSMUSG00000022130.10 ENSMUSG00000022130 ENSMUST00000228085 Tgds protein_coding Interval_161683 chr8 122013334 122013620 + 0 NA intron (ENSMUSG00000025316.16, intron 5 of 6) protein_coding-intron (ENSMUSG00000025316.16, intron 10 of 12) 35453 ENSMUSG00000099140.1 ENSMUSG00000099140 ENSMUST00000184699 Mir7237 miRNA Interval_87383 chr19 48168507 48168717 + 0 NA Intergenic Intergenic 51264 ENSMUSG00000117690.1 ENSMUSG00000117690 ENSMUST00000237618 Gm50430 lincRNA Interval_74707 chr17 56081107 56081478 + 0 NA promoter-TSS (ENSMUSG00000002833.11) protein_coding-promoter-TSS (ENSMUSG00000002833.11) 1658 ENSMUSG00000002833.11 ENSMUSG00000002833 ENSMUST00000225731 Hdgfl2 protein_coding Interval_95082 chr2 103760542 103761744 + 0 NA promoter-TSS (ENSMUSG00000027185.15) protein_coding-promoter-TSS (ENSMUSG00000027185.15) 52 ENSMUSG00000027185.15 ENSMUSG00000027185 ENSMUST00000148798 Nat10 protein_coding Interval_147828 chr7 73865095 73865872 + 0 NA Intergenic Intergenic 45893 ENSMUSG00000105381.1 ENSMUSG00000105381 ENSMUST00000199151 Mir7234 miRNA Interval_121575 chr5 3542091 3542619 + 0 NA Intergenic Intergenic -1682 ENSMUSG00000105656.1 ENSMUSG00000105656 ENSMUST00000198296 Gm43017 sense_intronic Interval_99505 chr2 162779209 162779550 + 0 NA Intergenic Intergenic 22070 ENSMUSG00000077143.1 ENSMUSG00000077143 ENSMUST00000103955 Gm22936 snoRNA Interval_86939 chr19 45105309 45105496 + 0 NA TTS (ENSMUSG00000117848.1) lincRNA-TTS (ENSMUSG00000117848.1) 18351 ENSMUSG00000117848.1 ENSMUSG00000117848 ENSMUST00000237139 Gm35867 lincRNA Interval_61187 chr15 79846779 79848545 + 0 NA TTS (ENSMUSG00000115971.1) lincRNA-TTS (ENSMUSG00000115971.1) 4499 ENSMUSG00000115971.1 ENSMUSG00000115971 ENSMUST00000230701 Gm10856 lincRNA Interval_35272 chr12 19310941 19311346 + 0 NA Intergenic Intergenic 9490 ENSMUSG00000113959.1 ENSMUSG00000113959 ENSMUST00000222720 Gm46339 TEC Interval_56348 chr14 117940086 117940981 + 0 NA intron (ENSMUSG00000058571.11, intron 7 of 9) protein_coding-intron (ENSMUSG00000058571.11, intron 6 of 8) 13314 ENSMUSG00000098648.1 ENSMUSG00000098648 ENSMUST00000183564 Mir6239 miRNA Interval_25859 chr11 52206409 52206668 + 0 NA Intergenic Intergenic 7449 ENSMUSG00000060170.3 ENSMUSG00000060170 ENSMUST00000075844 Olfr1371 protein_coding Interval_134006 chr6 17671007 17672245 + 0 NA Intergenic Intergenic -21800 ENSMUSG00000098767.1 ENSMUSG00000098767 ENSMUST00000184623 Gm27755 misc_RNA Interval_44855 chr13 49127368 49127566 + 0 NA intron (ENSMUSG00000037989.15, intron 2 of 27) protein_coding-intron (ENSMUSG00000037989.15, intron 2 of 27) 20545 ENSMUSG00000037989.15 ENSMUSG00000037989 ENSMUST00000159633 Wnk2 protein_coding Interval_3906 chr1 64677519 64677709 + 0 NA Intergenic Intergenic 13014 ENSMUSG00000087213.2 ENSMUSG00000087213 ENSMUST00000186325 2810408I11Rik processed_transcript Interval_42927 chr13 21447815 21448779 + 0 NA exon (ENSMUSG00000022228.14, exon 4 of 6) protein_coding-exon (ENSMUSG00000022228.14, exon 4 of 6) 3137 ENSMUSG00000084590.1 ENSMUSG00000084590 ENSMUST00000122641 Mir1896 miRNA Interval_62473 chr15 93274657 93275984 + 0 NA promoter-TSS (ENSMUSG00000036197.16) protein_coding-promoter-TSS (ENSMUSG00000036197.16) -141 ENSMUSG00000036197.16 ENSMUSG00000036197 ENSMUST00000057896 Gxylt1 protein_coding Interval_5715 chr1 91172660 91172982 + 0 NA promoter-TSS (ENSMUSG00000100018.1) processed_pseudogene-promoter-TSS (ENSMUSG00000100018.1) -673 ENSMUSG00000100018.1 ENSMUSG00000100018 ENSMUST00000191211 Gm7776 processed_pseudogene Interval_135561 chr6 40423708 40424041 + 0 NA intron (ENSMUSG00000037172.14, intron 1 of 1) protein_coding-intron (ENSMUSG00000037172.14, intron 1 of 7) 7534 ENSMUSG00000037172.14 ENSMUSG00000037172 ENSMUST00000200994 Dennd11 protein_coding Interval_86788 chr19 43893409 43895091 + 0 NA intron (ENSMUSG00000025195.9, intron 4 of 15) protein_coding-intron (ENSMUSG00000025195.9, intron 3 of 14) -14482 ENSMUSG00000025195.9 ENSMUSG00000025195 ENSMUST00000212157 Dnmbp protein_coding Interval_150797 chr7 114718497 114720217 + 0 NA promoter-TSS (ENSMUSG00000030666.11) protein_coding-promoter-TSS (ENSMUSG00000030666.11) 682 ENSMUSG00000030666.11 ENSMUSG00000030666 ENSMUST00000182044 Calcb protein_coding Interval_61696 chr15 83455502 83456259 + 0 NA intron (ENSMUSG00000016664.16, intron 1 of 4) protein_coding-intron (ENSMUSG00000016664.16, intron 1 of 11) -49817 ENSMUSG00000049414.7 ENSMUSG00000049414 ENSMUST00000079706 Gm5417 processed_pseudogene Interval_174407 chrX 151653676 151654076 + 0 NA Intergenic Intergenic -1312 ENSMUSG00000082342.1 ENSMUSG00000082342 ENSMUST00000121650 Gm5395 processed_pseudogene Interval_121464 chr4 155980533 155980983 + 0 NA Intergenic Intergenic 11891 ENSMUSG00000050796.4 ENSMUSG00000050796 ENSMUST00000052185 B3galt6 protein_coding Interval_172561 chrX 36784553 36785239 + 0 NA Intergenic Intergenic 8277 ENSMUSG00000064530.1 ENSMUSG00000064530 ENSMUST00000082596 Gm23613 snoRNA Interval_35647 chr12 26571686 26571973 + 0 NA TTS (ENSMUSG00000113628.1) lincRNA-TTS (ENSMUSG00000113628.1) -25430 ENSMUSG00000113524.1 ENSMUSG00000113524 ENSMUST00000223018 Gm47847 lincRNA Interval_173804 chrX 104612854 104613201 + 0 NA intron (ENSMUSG00000033906.5, intron 2 of 11) protein_coding-intron (ENSMUSG00000033906.5, intron 2 of 11) -3838 ENSMUSG00000089171.1 ENSMUSG00000089171 ENSMUST00000158546 Gm22430 snoRNA Interval_149542 chr7 99463198 99463639 + 0 NA Intergenic Intergenic -5545 ENSMUSG00000035298.8 ENSMUSG00000035298 ENSMUST00000152424 Klhl35 protein_coding Interval_117950 chr4 127282048 127282301 + 0 NA Intergenic Intergenic 2659 ENSMUSG00000087987.1 ENSMUSG00000087987 ENSMUST00000157362 Gm22221 snRNA Interval_131559 chr5 138126422 138126637 + 0 NA TTS (ENSMUSG00000037017.15) protein_coding-TTS (ENSMUSG00000037017.15) 9549 ENSMUSG00000037017.15 ENSMUSG00000037017 ENSMUST00000110959 Zscan21 protein_coding Interval_39060 chr12 84753807 84754007 + 0 NA TTS (ENSMUSG00000021242.9) protein_coding-TTS (ENSMUSG00000021242.9) 8633 ENSMUSG00000021242.9 ENSMUSG00000021242 ENSMUST00000221056 Npc2 protein_coding Interval_77354 chr17 88164998 88166055 + 0 NA Intergenic Intergenic -2961 ENSMUSG00000117369.1 ENSMUSG00000117369 ENSMUST00000233989 Gm31499 lincRNA Interval_40926 chr12 109935784 109936679 + 0 NA Intergenic Intergenic 24446 ENSMUSG00000112940.1 ENSMUSG00000112940 ENSMUST00000223541 4930511J24Rik lincRNA Interval_161245 chr8 119168939 119169370 + 0 NA intron (ENSMUSG00000031841.19, intron 1 of 3) protein_coding-intron (ENSMUSG00000031841.19, intron 7 of 13) 17689 ENSMUSG00000031841.19 ENSMUSG00000031841 ENSMUST00000151842 Cdh13 protein_coding Interval_146573 chr7 46941481 46942599 + 0 NA intron (ENSMUSG00000043262.16, intron 7 of 11) protein_coding-intron (ENSMUSG00000043262.16, intron 7 of 11) -12616 ENSMUSG00000109231.1 ENSMUSG00000109231 ENSMUST00000208344 Gm45737 TEC Interval_48817 chr13 103645647 103646655 + 0 NA intron (ENSMUSG00000114206.1, intron 1 of 3) lincRNA-intron (ENSMUSG00000114206.1, intron 1 of 3) 4225 ENSMUSG00000096642.1 ENSMUSG00000096642 ENSMUST00000179897 Gm24870 snRNA Interval_171930 chr9 122669597 122670138 + 0 NA intron (ENSMUSG00000097736.8, intron 4 of 5) lincRNA-intron (ENSMUSG00000097736.8, intron 2 of 3) -13009 ENSMUSG00000065414.1 ENSMUSG00000065414 ENSMUST00000083480 Mir138-1 miRNA Interval_137484 chr6 72710934 72712171 + 0 NA intron (ENSMUSG00000055799.13, intron 2 of 5) protein_coding-intron (ENSMUSG00000055799.13, intron 3 of 11) 12338 ENSMUSG00000079524.2 ENSMUSG00000079524 ENSMUST00000114051 Gm15402 antisense Interval_59612 chr15 56076723 56078142 + 0 NA Intergenic Intergenic -27600 ENSMUSG00000115678.1 ENSMUSG00000115678 ENSMUST00000228202 Gm49212 lincRNA Interval_18821 chr10 91116960 91117475 + 0 NA TTS (ENSMUSG00000061904.12) protein_coding-TTS (ENSMUSG00000061904.12) 1319 ENSMUSG00000077167.1 ENSMUSG00000077167 ENSMUST00000103979 Gm24119 snoRNA Interval_124117 chr5 38477151 38478032 + 0 NA intron (ENSMUSG00000005107.13, intron 3 of 13) protein_coding-intron (ENSMUSG00000005107.13, intron 2 of 10) 2591 ENSMUSG00000005107.13 ENSMUSG00000005107 ENSMUST00000156076 Slc2a9 protein_coding Interval_114970 chr4 87806284 87806972 + 0 NA promoter-TSS (ENSMUSG00000028496.17) protein_coding-promoter-TSS (ENSMUSG00000028496.17) -305 ENSMUSG00000028496.17 ENSMUSG00000028496 ENSMUST00000142454 Mllt3 protein_coding Interval_92931 chr2 68765166 68765936 + 0 NA Intergenic Intergenic 49260 ENSMUSG00000079324.11 ENSMUSG00000079324 ENSMUST00000135023 4932414N04Rik protein_coding Interval_8074 chr1 135568266 135568646 + 0 NA intron (ENSMUSG00000009418.16, intron 4 of 30) protein_coding-intron (ENSMUSG00000009418.16, intron 1 of 29) -16317 ENSMUSG00000054412.5 ENSMUSG00000054412 ENSMUST00000067468 Gm4793 antisense Interval_18249 chr10 84283893 84284848 + 0 NA Intergenic Intergenic -24516 ENSMUSG00000111875.1 ENSMUSG00000111875 ENSMUST00000214125 Gm5425 processed_pseudogene Interval_54885 chr14 75982556 75983083 + 0 NA intron (ENSMUSG00000067995.4, intron 4 of 7) protein_coding-intron (ENSMUSG00000067995.4, intron 4 of 7) -10200 ENSMUSG00000065799.1 ENSMUSG00000065799 ENSMUST00000083865 Gm25517 snoRNA Interval_151373 chr7 121911413 121912445 + 0 NA TTS (ENSMUSG00000030873.9) protein_coding-TTS (ENSMUSG00000030873.9) 12701 ENSMUSG00000030873.9 ENSMUSG00000030873 ENSMUST00000206079 Scnn1b protein_coding Interval_146952 chr7 56201316 56202229 + 0 NA intron (ENSMUSG00000030451.16, intron 69 of 90) protein_coding-intron (ENSMUSG00000030451.16, intron 70 of 92) 15481 ENSMUSG00000108347.1 ENSMUSG00000108347 ENSMUST00000206781 Gm19187 processed_pseudogene Interval_84698 chr19 15478920 15479092 + 0 NA Intergenic Intergenic -200998 ENSMUSG00000094850.1 ENSMUSG00000094850 ENSMUST00000083389 Gm24319 snRNA Interval_115782 chr4 104195501 104195690 + 0 NA intron (ENSMUSG00000028519.16, intron 3 of 9) protein_coding-intron (ENSMUSG00000028519.16, intron 3 of 9) 254636 ENSMUSG00000081696.2 ENSMUSG00000081696 ENSMUST00000118427 Gm12717 processed_pseudogene Interval_15559 chr10 51451922 51452354 + 0 NA Intergenic Intergenic -3842 ENSMUSG00000112212.1 ENSMUSG00000112212 ENSMUST00000219395 Gm46189 lincRNA Interval_16220 chr10 61510838 61511120 + 0 NA promoter-TSS (ENSMUSG00000112710.1) processed_pseudogene-promoter-TSS (ENSMUSG00000112710.1) -394 ENSMUSG00000112710.1 ENSMUSG00000112710 ENSMUST00000219782 Gm17829 processed_pseudogene Interval_97198 chr2 132201340 132201597 + 0 NA intron (ENSMUSG00000086756.1, intron 2 of 2) antisense-intron (ENSMUSG00000086756.1, intron 2 of 2) 46320 ENSMUSG00000027341.10 ENSMUSG00000027341 ENSMUST00000141813 Tmem230 protein_coding Interval_118600 chr4 132713743 132714023 + 0 NA intron (ENSMUSG00000028886.15, intron 14 of 15) protein_coding-intron (ENSMUSG00000028886.15, intron 13 of 14) 18645 ENSMUSG00000037752.4 ENSMUSG00000037752 ENSMUST00000143642 Xkr8 protein_coding Interval_76328 chr17 79095081 79095697 + 0 NA Intergenic Intergenic 8355 ENSMUSG00000117054.1 ENSMUSG00000117054 ENSMUST00000232888 Gm49869 processed_pseudogene Interval_102553 chr3 27702233 27703981 + 0 NA intron (ENSMUSG00000039286.12, intron 1 of 26) protein_coding-intron (ENSMUSG00000039286.12, intron 1 of 25) 7291 ENSMUSG00000039286.12 ENSMUSG00000039286 ENSMUST00000193779 Fndc3b protein_coding Interval_40562 chr12 105748137 105748381 + 0 NA TTS (ENSMUSG00000041323.6) protein_coding-TTS (ENSMUSG00000041323.6) 29403 ENSMUSG00000041323.6 ENSMUSG00000041323 ENSMUST00000220702 Ak7 protein_coding Interval_35995 chr12 33175749 33176665 + 0 NA intron (ENSMUSG00000020564.17, intron 2 of 12) protein_coding-intron (ENSMUSG00000020564.17, intron 1 of 2) -28611 ENSMUSG00000052125.16 ENSMUSG00000052125 ENSMUST00000172344 F730043M19Rik bidirectional_promoter_lncRNA Interval_149273 chr7 96865002 96865603 + 0 NA intron (ENSMUSG00000048078.16, intron 25 of 32) protein_coding-intron (ENSMUSG00000048078.16, intron 25 of 32) -1923 ENSMUSG00000089259.1 ENSMUSG00000089259 ENSMUST00000158634 Gm25712 rRNA Interval_157805 chr8 73438590 73438849 + 0 NA Intergenic Intergenic -1115 ENSMUSG00000110450.1 ENSMUSG00000110450 ENSMUST00000212078 Gm7943 processed_pseudogene Interval_131087 chr5 135012845 135013304 + 0 NA promoter-TSS (ENSMUSG00000085042.8) transcribed_unitary_pseudogene-promoter-TSS (ENSMUSG00000085042.8) -286 ENSMUSG00000085042.8 ENSMUSG00000085042 ENSMUST00000222613 Abhd11os transcribed_unitary_pseudogene Interval_170061 chr9 104140283 104141027 + 0 NA Intergenic Intergenic 17905 ENSMUSG00000090150.10 ENSMUSG00000090150 ENSMUST00000128714 Acad11 protein_coding Interval_124935 chr5 61112393 61112843 + 0 NA Intergenic Intergenic -166969 ENSMUSG00000105903.1 ENSMUSG00000105903 ENSMUST00000199566 1700014F14Rik lincRNA Interval_40292 chr12 103241401 103243346 + 0 NA promoter-TSS (ENSMUSG00000041669.15) protein_coding-promoter-TSS (ENSMUSG00000041669.15) -245 ENSMUSG00000041669.15 ENSMUSG00000041669 ENSMUST00000155547 Prima1 protein_coding Interval_97140 chr2 131594102 131594418 + 0 NA Intergenic Intergenic -31977 ENSMUSG00000027335.9 ENSMUSG00000027335 ENSMUST00000103184 Adra1d protein_coding Interval_9309 chr1 156076168 156076939 + 0 NA exon (ENSMUSG00000015484.3, exon 5 of 5) protein_coding-exon (ENSMUSG00000015484.3, exon 5 of 5) 40781 ENSMUSG00000050565.16 ENSMUSG00000050565 ENSMUST00000125371 Tor1aip2 protein_coding Interval_107350 chr3 106413979 106415171 + 0 NA Intergenic Intergenic -8393 ENSMUSG00000027902.8 ENSMUSG00000027902 ENSMUST00000029510 Chil6 protein_coding Interval_14911 chr10 41018706 41019373 + 0 NA Intergenic Intergenic -16156 ENSMUSG00000111098.1 ENSMUSG00000111098 ENSMUST00000214667 Gm48057 lincRNA Interval_7913 chr1 134549198 134550385 + 0 NA promoter-TSS (ENSMUSG00000046367.10) protein_coding-promoter-TSS (ENSMUSG00000046367.10) -2841 ENSMUSG00000046367.10 ENSMUSG00000046367 ENSMUST00000185836 Mgat4e protein_coding Interval_99793 chr2 164942603 164943044 + 0 NA intron (ENSMUSG00000017737.2, intron 1 of 2) protein_coding-intron (ENSMUSG00000017737.2, intron 1 of 2) -11563 ENSMUSG00000017737.2 ENSMUSG00000017737 ENSMUST00000144917 Mmp9 protein_coding Interval_59470 chr15 53359267 53360341 + 0 NA Intergenic Intergenic -24115 ENSMUSG00000087805.2 ENSMUSG00000087805 ENSMUST00000157180 Gm27926 snRNA Interval_110422 chr3 157944776 157945293 + 0 NA Intergenic Intergenic 19814 ENSMUSG00000028177.13 ENSMUSG00000028177 ENSMUST00000196971 1810013D15Rik antisense Interval_129557 chr5 120913998 120915045 + 0 NA promoter-TSS (ENSMUSG00000032623.9) protein_coding-promoter-TSS (ENSMUSG00000032623.9) -15 ENSMUSG00000032623.9 ENSMUSG00000032623 ENSMUST00000044224 Oas1d protein_coding Interval_157850 chr8 74934907 74935647 + 0 NA Intergenic Intergenic 61737 ENSMUSG00000031621.9 ENSMUSG00000031621 ENSMUST00000174427 Isx protein_coding Interval_83212 chr18 82796502 82797165 + 0 NA Intergenic Intergenic -37792 ENSMUSG00000101773.1 ENSMUSG00000101773 ENSMUST00000188435 2210420H20Rik lincRNA Interval_131232 chr5 135926127 135926497 + 0 NA intron (ENSMUSG00000051391.9, intron 1 of 2) protein_coding-intron (ENSMUSG00000051391.9, intron 1 of 1) 8242 ENSMUSG00000051391.9 ENSMUSG00000051391 ENSMUST00000126192 Ywhag protein_coding Interval_156944 chr8 62079065 62079613 + 0 NA intron (ENSMUSG00000031635.14, intron 3 of 7) protein_coding-intron (ENSMUSG00000031635.14, intron 3 of 11) 43811 ENSMUSG00000031635.14 ENSMUSG00000031635 ENSMUST00000210799 Anxa10 protein_coding Interval_33107 chr11 114478541 114479425 + 0 NA Intergenic Intergenic -30123 ENSMUSG00000062391.3 ENSMUSG00000062391 ENSMUST00000141088 4932435O22Rik lincRNA Interval_32420 chr11 107454619 107455548 + 0 NA intron (ENSMUSG00000040430.18, intron 1 of 9) protein_coding-intron (ENSMUSG00000040430.18, intron 1 of 9) -24445 ENSMUSG00000020720.13 ENSMUSG00000020720 ENSMUST00000106750 Psmd12 protein_coding Interval_65068 chr16 18819327 18820736 + 0 NA intron (ENSMUSG00000005262.13, intron 4 of 10) protein_coding-intron (ENSMUSG00000005262.13, intron 4 of 11) 8207 ENSMUSG00000005262.13 ENSMUSG00000005262 ENSMUST00000170325 Ufd1 protein_coding Interval_90771 chr2 32514169 32515006 + 0 NA Intergenic Intergenic -10444 ENSMUSG00000085017.1 ENSMUSG00000085017 ENSMUST00000150621 Gm13412 lincRNA Interval_72305 chr17 29067782 29069524 + 0 NA intron (ENSMUSG00000085912.2, intron 1 of 1) lincRNA-intron (ENSMUSG00000085912.2, intron 1 of 1) 3689 ENSMUSG00000085912.2 ENSMUSG00000085912 ENSMUST00000233713 Trp53cor1 lincRNA Interval_108250 chr3 122983839 122985119 + 0 NA promoter-TSS (ENSMUSG00000039701.11) protein_coding-promoter-TSS (ENSMUSG00000039701.11) -586 ENSMUSG00000039701.11 ENSMUSG00000039701 ENSMUST00000200188 Usp53 protein_coding Interval_167020 chr9 64593190 64594309 + 0 NA intron (ENSMUSG00000036466.17, intron 1 of 1) protein_coding-intron (ENSMUSG00000036466.17, intron 5 of 24) 131971 ENSMUSG00000004771.12 ENSMUSG00000004771 ENSMUST00000165083 Rab11a protein_coding Interval_68044 chr16 64666576 64667362 + 0 NA Intergenic Intergenic -64561 ENSMUSG00000068167.6 ENSMUSG00000068167 ENSMUST00000089279 Csnka2ip protein_coding Interval_50887 chr14 20478617 20480277 + 0 NA intron (ENSMUSG00000021814.17, intron 1 of 3) protein_coding-intron (ENSMUSG00000021814.17, intron 1 of 12) 17454 ENSMUSG00000021815.4 ENSMUSG00000021815 ENSMUST00000022353 Mss51 protein_coding Interval_21982 chr11 5541552 5542624 + 0 NA promoter-TSS (ENSMUSG00000020482.4) protein_coding-promoter-TSS (ENSMUSG00000020482.4) 99 ENSMUSG00000020482.4 ENSMUSG00000020482 ENSMUST00000020776 Ccdc117 protein_coding Interval_85438 chr19 26237347 26237733 + 0 NA Intergenic Intergenic 12390 ENSMUSG00000117950.1 ENSMUSG00000117950 ENSMUST00000237746 Gm50376 lincRNA Interval_24902 chr11 41028806 41029320 + 0 NA Intergenic Intergenic 6060 ENSMUSG00000065916.1 ENSMUSG00000065916 ENSMUST00000083982 Gm24446 snRNA Interval_118838 chr4 133966972 133969268 + 0 NA promoter-TSS (ENSMUSG00000003038.15) protein_coding-promoter-TSS (ENSMUSG00000003038.15) -229 ENSMUSG00000003038.15 ENSMUSG00000003038 ENSMUST00000136859 Hmgn2 protein_coding Interval_147020 chr7 58447454 58447673 + 0 NA Intergenic Intergenic -70599 ENSMUSG00000109348.1 ENSMUSG00000109348 ENSMUST00000207950 Gm44852 processed_pseudogene Interval_1934 chr1 34684270 34684638 + 0 NA intron (ENSMUSG00000037509.21, intron 1 of 13) protein_coding-intron (ENSMUSG00000037509.21, intron 1 of 13) -48265 ENSMUSG00000104098.1 ENSMUSG00000104098 ENSMUST00000195095 AA619741 processed_pseudogene Interval_68278 chr16 72215458 72216093 + 0 NA Intergenic Intergenic 18552 ENSMUSG00000116769.1 ENSMUSG00000116769 ENSMUST00000231977 8030451O07Rik lincRNA Interval_141808 chr6 134631961 134633077 + 0 NA promoter-TSS (ENSMUSG00000032718.4) protein_coding-promoter-TSS (ENSMUSG00000032718.4) -31 ENSMUSG00000032718.4 ENSMUSG00000032718 ENSMUST00000047443 Mansc1 protein_coding Interval_55536 chr14 91230883 91231485 + 0 NA Intergenic Intergenic -31306 ENSMUSG00000115225.1 ENSMUSG00000115225 ENSMUST00000226887 Gm7272 processed_pseudogene Interval_1504 chr1 24330488 24330923 + 0 NA intron (ENSMUSG00000026141.13, intron 8 of 39) protein_coding-intron (ENSMUSG00000026141.13, intron 19 of 47) 101188 ENSMUSG00000026147.16 ENSMUSG00000026147 ENSMUST00000147902 Col9a1 protein_coding Interval_115224 chr4 94564580 94564962 + 0 NA Intergenic Intergenic -8005 ENSMUSG00000028578.8 ENSMUSG00000028578 ENSMUST00000153294 Caap1 protein_coding Interval_101627 chr3 8110406 8111273 + 0 NA Intergenic Intergenic -103493 ENSMUSG00000103725.1 ENSMUSG00000103725 ENSMUST00000195642 Gm7103 processed_pseudogene Interval_76603 chr17 82311888 82312669 + 0 NA Intergenic Intergenic -43115 ENSMUSG00000117643.1 ENSMUSG00000117643 ENSMUST00000234825 Gm9390 processed_pseudogene Interval_172417 chrX 18433771 18434027 + 0 NA intron (ENSMUSG00000037358.6, intron 3 of 7) protein_coding-intron (ENSMUSG00000037358.6, intron 2 of 4) 27498 ENSMUSG00000037358.6 ENSMUSG00000037358 ENSMUST00000044188 Dipk2b protein_coding Interval_4759 chr1 78442315 78442608 + 0 NA intron (ENSMUSG00000026245.16, intron 16 of 16) protein_coding-intron (ENSMUSG00000026245.16, intron 16 of 16) 9109 ENSMUSG00000101798.1 ENSMUSG00000101798 ENSMUST00000186625 Gm28995 unprocessed_pseudogene Interval_107901 chr3 116688829 116689875 + 0 NA intron (ENSMUSG00000027957.13, intron 3 of 5) protein_coding-intron (ENSMUSG00000027957.13, intron 2 of 7) -8092 ENSMUSG00000105103.1 ENSMUSG00000105103 ENSMUST00000140672 Gm43191 protein_coding Interval_73149 chr17 35099922 35100703 + 0 NA promoter-TSS (ENSMUSG00000007036.15) protein_coding-promoter-TSS (ENSMUSG00000007036.15) -7967 ENSMUSG00000034482.2 ENSMUSG00000034482 ENSMUST00000037849 Ly6g5c protein_coding Interval_56482 chr14 119059640 119060893 + 0 NA exon (ENSMUSG00000042104.18, exon 12 of 12) protein_coding-exon (ENSMUSG00000042104.18, exon 12 of 12) -24227 ENSMUSG00000042104.18 ENSMUSG00000042104 ENSMUST00000136924 Uggt2 protein_coding Interval_122771 chr5 25275391 25276577 + 0 NA exon (ENSMUSG00000038056.15, exon 2 of 3) protein_coding-exon (ENSMUSG00000038056.15, exon 2 of 3) 24091 ENSMUSG00000038056.15 ENSMUSG00000038056 ENSMUST00000172626 Kmt2c protein_coding Interval_5092 chr1 84881186 84882638 + 0 NA intron (ENSMUSG00000073633.9, intron 2 of 3) protein_coding-intron (ENSMUSG00000073633.9, intron 2 of 3) 12761 ENSMUSG00000073633.9 ENSMUSG00000073633 ENSMUST00000151737 Fbxo36 protein_coding Interval_66104 chr16 31630442 31631701 + 0 NA intron (ENSMUSG00000116597.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000116597.1, intron 1 of 1) 13336 ENSMUSG00000116597.1 ENSMUSG00000116597 ENSMUST00000232209 Gm536 lincRNA Interval_164557 chr9 38636518 38636963 + 0 NA Intergenic Intergenic 10782 ENSMUSG00000057444.3 ENSMUSG00000057444 ENSMUST00000215191 Olfr915 polymorphic_pseudogene Interval_96457 chr2 123754554 123754933 + 0 NA Intergenic Intergenic 375213 ENSMUSG00000085496.1 ENSMUSG00000085496 ENSMUST00000129584 4930517E11Rik lincRNA Interval_41388 chr12 113221930 113223257 + 0 NA Intergenic Intergenic 8444 ENSMUSG00000087842.1 ENSMUSG00000087842 ENSMUST00000157217 Gm25622 snRNA Interval_2040 chr1 36059988 36061673 + 0 NA Intergenic Intergenic -29812 ENSMUSG00000102434.1 ENSMUSG00000102434 ENSMUST00000195698 Gm38049 TEC Interval_67510 chr16 50032588 50033358 + 0 NA Intergenic Intergenic -78100 ENSMUSG00000098028.1 ENSMUSG00000098028 ENSMUST00000182962 Gm8824 processed_pseudogene Interval_164491 chr9 37459939 37460927 + 0 NA Intergenic Intergenic 18210 ENSMUSG00000111702.1 ENSMUSG00000111702 ENSMUST00000214167 Gm47945 unprocessed_pseudogene Interval_87900 chr19 56990066 56991250 + 0 NA intron (ENSMUSG00000025083.18, intron 3 of 12) protein_coding-intron (ENSMUSG00000025083.18, intron 2 of 19) -53420 ENSMUSG00000025083.18 ENSMUSG00000025083 ENSMUST00000132851 Afap1l2 protein_coding Interval_82281 chr18 69939117 69939372 + 0 NA TTS (ENSMUSG00000038903.13) protein_coding-TTS (ENSMUSG00000038903.13) 13818 ENSMUSG00000038903.13 ENSMUSG00000038903 ENSMUST00000080050 Ccdc68 protein_coding Interval_3066 chr1 52830603 52830819 + 0 NA Intergenic Intergenic -14218 ENSMUSG00000041426.12 ENSMUSG00000041426 ENSMUST00000162609 Hibch protein_coding Interval_59599 chr15 55854493 55854949 + 0 NA intron (ENSMUSG00000060429.12, intron 1 of 1) protein_coding-intron (ENSMUSG00000060429.12, intron 1 of 6) 51589 ENSMUSG00000060429.12 ENSMUSG00000060429 ENSMUST00000140574 Sntb1 protein_coding Interval_63781 chr15 103377925 103378230 + 0 NA promoter-TSS (ENSMUSG00000104327.1) TEC-promoter-TSS (ENSMUSG00000104327.1) 6 ENSMUSG00000104327.1 ENSMUSG00000104327 ENSMUST00000193409 Gm37322 TEC Interval_117028 chr4 119094595 119095640 + 0 NA Intergenic Intergenic -13752 ENSMUSG00000028645.11 ENSMUSG00000028645 ENSMUST00000174372 Slc2a1 protein_coding Interval_90309 chr2 29702163 29702376 + 0 NA promoter-TSS (ENSMUSG00000039844.20) protein_coding-promoter-TSS (ENSMUSG00000039844.20) 36396 ENSMUSG00000048316.3 ENSMUSG00000048316 ENSMUST00000051212 Gm9823 pseudogene Interval_106081 chr3 92694524 92695383 + 0 NA Intergenic Intergenic 5527 ENSMUSG00000091421.3 ENSMUSG00000091421 ENSMUST00000169025 Gm4202 processed_pseudogene Interval_116649 chr4 116330112 116330376 + 0 NA intron (ENSMUSG00000003810.13, intron 4 of 25) protein_coding-intron (ENSMUSG00000003810.13, intron 7 of 28) 41488 ENSMUSG00000003810.13 ENSMUSG00000003810 ENSMUST00000151347 Mast2 protein_coding Interval_27318 chr11 66159816 66160019 + 0 NA exon (ENSMUSG00000056752.16, exon 2 of 69) protein_coding-exon (ENSMUSG00000056752.16, exon 2 of 69) -8118 ENSMUSG00000084967.1 ENSMUSG00000084967 ENSMUST00000144922 Gm12296 processed_transcript Interval_62581 chr15 94871737 94872242 + 0 NA intron (ENSMUSG00000063296.5, intron 3 of 7) protein_coding-intron (ENSMUSG00000063296.5, intron 3 of 7) 115149 ENSMUSG00000077447.1 ENSMUSG00000077447 ENSMUST00000104259 Gm23129 snoRNA Interval_44617 chr13 46745899 46746104 + 0 NA Intergenic Intergenic 21648 ENSMUSG00000064558.1 ENSMUSG00000064558 ENSMUST00000082624 Gm24620 snoRNA Interval_118387 chr4 131036119 131037760 + 0 NA Intergenic Intergenic -26465 ENSMUSG00000086262.7 ENSMUSG00000086262 ENSMUST00000153810 A930031H19Rik lincRNA Interval_72618 chr17 31094489 31096199 + 0 NA intron (ENSMUSG00000024030.7, intron 4 of 5) protein_coding-intron (ENSMUSG00000024030.7, intron 4 of 14) 34302 ENSMUSG00000024029.4 ENSMUSG00000024029 ENSMUST00000024827 Tff3 protein_coding Interval_93474 chr2 73356652 73357348 + 0 NA promoter-TSS (ENSMUSG00000085519.1) antisense-promoter-TSS (ENSMUSG00000085519.1) -268 ENSMUSG00000085519.1 ENSMUSG00000085519 ENSMUST00000150705 Gm13703 antisense Interval_90679 chr2 31845008 31847040 + 0 NA promoter-TSS (ENSMUSG00000026841.7) protein_coding-promoter-TSS (ENSMUSG00000026841.7) -19 ENSMUSG00000026841.7 ENSMUSG00000026841 ENSMUST00000028188 Fibcd1 protein_coding Interval_78054 chr18 7565367 7565810 + 0 NA intron (ENSMUSG00000057440.8, intron 1 of 2) protein_coding-intron (ENSMUSG00000057440.8, intron 1 of 16) -15928 ENSMUSG00000094334.2 ENSMUSG00000094334 ENSMUST00000072582 Fabp5l2 processed_pseudogene Interval_23888 chr11 27709810 27710042 + 0 NA Intergenic Intergenic -173186 ENSMUSG00000084064.1 ENSMUSG00000084064 ENSMUST00000112483 Gm12079 processed_pseudogene Interval_65657 chr16 24884026 24884445 + 0 NA promoter-TSS (ENSMUSG00000077602.1) snoRNA-promoter-TSS (ENSMUSG00000077602.1) 62 ENSMUSG00000077602.1 ENSMUSG00000077602 ENSMUST00000104414 Gm22672 snoRNA Interval_173512 chrX 97141769 97142428 + 0 NA Intergenic Intergenic 20828 ENSMUSG00000081135.1 ENSMUSG00000081135 ENSMUST00000122084 Gm14800 processed_pseudogene Interval_76467 chr17 80410654 80411813 + 0 NA intron (ENSMUSG00000024241.7, intron 17 of 19) protein_coding-intron (ENSMUSG00000024241.7, intron 17 of 21) 29869 ENSMUSG00000054901.7 ENSMUSG00000054901 ENSMUST00000226013 Arhgef33 protein_coding Interval_16609 chr10 65238185 65238407 + 0 NA Intergenic Intergenic -117929 ENSMUSG00000100528.1 ENSMUSG00000100528 ENSMUST00000187710 Gm28881 lincRNA Interval_104789 chr3 73361276 73361804 + 0 NA intron (ENSMUSG00000102362.1, intron 6 of 7) lincRNA-intron (ENSMUSG00000102820.1, intron 4 of 4) 32106 ENSMUSG00000102820.1 ENSMUSG00000102820 ENSMUST00000192351 Gm38353 lincRNA Interval_19319 chr10 96655806 96656498 + 0 NA Intergenic Intergenic 38598 ENSMUSG00000036478.8 ENSMUSG00000036478 ENSMUST00000218953 Btg1 protein_coding Interval_100222 chr2 167764805 167765863 + 0 NA Intergenic Intergenic -12133 ENSMUSG00000084797.1 ENSMUSG00000084797 ENSMUST00000127441 Gm14321 lincRNA Interval_162823 chr9 9595646 9595849 + 0 NA Intergenic Intergenic -12440 ENSMUSG00000111061.1 ENSMUSG00000111061 ENSMUST00000217005 Gm46102 lincRNA Interval_103238 chr3 37312007 37313337 + 0 NA promoter-TSS (ENSMUSG00000045031.18) protein_coding-promoter-TSS (ENSMUSG00000045031.18) 116 ENSMUSG00000051444.9 ENSMUSG00000051444 ENSMUST00000108121 Bbs12 protein_coding Interval_34369 chr12 3654629 3655104 + 0 NA intron (ENSMUSG00000071454.13, intron 8 of 8) protein_coding-intron (ENSMUSG00000071454.13, intron 8 of 18) -44312 ENSMUSG00000077830.1 ENSMUSG00000077830 ENSMUST00000104640 Gm26050 miRNA Interval_102422 chr3 25249805 25250860 + 0 NA Intergenic Intergenic -37727 ENSMUSG00000069083.4 ENSMUSG00000069083 ENSMUST00000091289 Gm10259 processed_pseudogene Interval_171048 chr9 113980621 113981620 + 0 NA intron (ENSMUSG00000032507.15, intron 14 of 15) protein_coding-intron (ENSMUSG00000032507.15, intron 13 of 14) -10122 ENSMUSG00000111793.1 ENSMUSG00000111793 ENSMUST00000214534 Gm47950 antisense Interval_110356 chr3 157358914 157359467 + 0 NA Intergenic Intergenic -6808 ENSMUSG00000064510.1 ENSMUSG00000064510 ENSMUST00000082576 Gm22458 snRNA Interval_135845 chr6 47877318 47878369 + 0 NA intron (ENSMUSG00000025821.9, intron 1 of 3) protein_coding-intron (ENSMUSG00000025821.9, intron 1 of 7) 187 ENSMUSG00000025821.9 ENSMUSG00000025821 ENSMUST00000125957 Zfp282 protein_coding Interval_76938 chr17 85059801 85060069 + 0 NA intron (ENSMUSG00000024131.8, intron 8 of 9) protein_coding-intron (ENSMUSG00000024131.8, intron 8 of 9) 17539 ENSMUSG00000024127.15 ENSMUSG00000024127 ENSMUST00000234393 Prepl protein_coding Interval_76317 chr17 78994664 78995461 + 0 NA intron (ENSMUSG00000024070.15, intron 2 of 18) protein_coding-intron (ENSMUSG00000024070.15, intron 1 of 17) 25754 ENSMUSG00000024070.15 ENSMUSG00000024070 ENSMUST00000130070 Prkd3 protein_coding Interval_109608 chr3 145101847 145102410 + 0 NA Intergenic Intergenic -3022 ENSMUSG00000036960.10 ENSMUSG00000036960 ENSMUST00000197121 Clca2 protein_coding Interval_53545 chr14 58818512 58818723 + 0 NA Intergenic Intergenic 60698 ENSMUSG00000098157.1 ENSMUSG00000098157 ENSMUST00000182482 Gm9022 transcribed_processed_pseudogene Interval_87663 chr19 54080944 54081977 + 0 NA Intergenic Intergenic -3099 ENSMUSG00000117921.1 ENSMUSG00000117921 ENSMUST00000236398 Gm50186 lincRNA Interval_145353 chr7 34167997 34170942 + 0 NA promoter-TSS (ENSMUSG00000052997.15) protein_coding-promoter-TSS (ENSMUSG00000052997.15) -5128 ENSMUSG00000052997.15 ENSMUSG00000052997 ENSMUST00000206651 Uba2 protein_coding Interval_171045 chr9 113952301 113952489 + 0 NA intron (ENSMUSG00000009741.15, intron 3 of 13) protein_coding-intron (ENSMUSG00000009741.15, intron 4 of 15) 18603 ENSMUSG00000111793.1 ENSMUSG00000111793 ENSMUST00000214534 Gm47950 antisense Interval_68305 chr16 72898430 72899280 + 0 NA intron (ENSMUSG00000022883.11, intron 2 of 28) protein_coding-intron (ENSMUSG00000022883.11, intron 2 of 28) -77494 ENSMUSG00000022883.11 ENSMUSG00000022883 ENSMUST00000232432 Robo1 protein_coding Interval_138918 chr6 93539904 93540552 + 0 NA Intergenic Intergenic 30655 ENSMUSG00000088630.1 ENSMUSG00000088630 ENSMUST00000158005 Gm22312 snoRNA Interval_19447 chr10 99360512 99361204 + 0 NA intron (ENSMUSG00000044633.4, intron 1 of 2) lincRNA-intron (ENSMUSG00000044633.4, intron 1 of 2) 61692 ENSMUSG00000044633.4 ENSMUSG00000044633 ENSMUST00000060657 B530045E10Rik lincRNA Interval_173854 chrX 105978417 105978631 + 0 NA intron (ENSMUSG00000031232.17, intron 8 of 8) protein_coding-intron (ENSMUSG00000031232.17, intron 8 of 10) 33375 ENSMUSG00000031232.17 ENSMUSG00000031232 ENSMUST00000139421 Magt1 protein_coding Interval_174510 chrX 154673090 154673463 + 0 NA Intergenic Intergenic 37725 ENSMUSG00000084367.3 ENSMUSG00000084367 ENSMUST00000121013 Gm15142 unprocessed_pseudogene Interval_105904 chr3 89989246 89989479 + 0 NA Intergenic Intergenic 9000 ENSMUSG00000027944.13 ENSMUSG00000027944 ENSMUST00000199740 Hax1 protein_coding Interval_165306 chr9 46169089 46169489 + 0 NA intron (ENSMUSG00000034135.15, intron 1 of 20) protein_coding-intron (ENSMUSG00000034135.15, intron 4 of 22) 46159 ENSMUSG00000034135.15 ENSMUSG00000034135 ENSMUST00000138338 Sik3 protein_coding Interval_138403 chr6 87900372 87900710 + 0 NA intron (ENSMUSG00000030058.17, intron 4 of 4) protein_coding-intron (ENSMUSG00000030058.17, intron 13 of 23) 6598 ENSMUSG00000030058.17 ENSMUSG00000030058 ENSMUST00000127614 Copg1 protein_coding Interval_168125 chr9 77381259 77381813 + 0 NA intron (ENSMUSG00000099170.1, intron 3 of 3) lincRNA-intron (ENSMUSG00000099170.1, intron 3 of 3) 17882 ENSMUSG00000099170.1 ENSMUSG00000099170 ENSMUST00000183878 5730403I07Rik lincRNA Interval_57393 chr15 10534291 10534829 + 0 NA intron (ENSMUSG00000022249.14, intron 5 of 11) protein_coding-intron (ENSMUSG00000022249.14, intron 5 of 10) -7679 ENSMUSG00000091615.2 ENSMUSG00000091615 ENSMUST00000168549 Gm17044 processed_pseudogene Interval_160485 chr8 109916900 109917930 + 0 NA intron (ENSMUSG00000031732.12, intron 9 of 18) protein_coding-intron (ENSMUSG00000031732.12, intron 9 of 18) -7973 ENSMUSG00000085678.1 ENSMUSG00000085678 ENSMUST00000149990 Gm16349 processed_transcript Interval_19628 chr10 106093649 106094354 + 0 NA Intergenic Intergenic 19774 ENSMUSG00000112034.1 ENSMUSG00000112034 ENSMUST00000219276 Gm48363 TEC Interval_92500 chr2 60134868 60136235 + 0 NA TTS (ENSMUSG00000082330.1) processed_pseudogene-TTS (ENSMUSG00000082330.1) 1496 ENSMUSG00000082330.1 ENSMUSG00000082330 ENSMUST00000119390 Ldha-ps processed_pseudogene Interval_109500 chr3 142968267 142969948 + 0 NA Intergenic Intergenic 6496 ENSMUSG00000078162.6 ENSMUSG00000078162 ENSMUST00000181051 Gm2574 processed_pseudogene Interval_162426 chr8 128639672 128640312 + 0 NA Intergenic Intergenic 6056 ENSMUSG00000110562.1 ENSMUSG00000110562 ENSMUST00000212641 Gm9204 processed_pseudogene Interval_160464 chr8 109731817 109732627 + 0 NA promoter-TSS (ENSMUSG00000069895.4) protein_coding-promoter-TSS (ENSMUSG00000069895.4) -109 ENSMUSG00000069895.4 ENSMUSG00000069895 ENSMUST00000212726 Atxn1l protein_coding Interval_55605 chr14 95477125 95477490 + 0 NA Intergenic Intergenic 57521 ENSMUSG00000115243.1 ENSMUSG00000115243 ENSMUST00000228617 Gm5207 processed_pseudogene Interval_155219 chr8 27852589 27853755 + 0 NA Intergenic Intergenic -92061 ENSMUSG00000064882.1 ENSMUSG00000064882 ENSMUST00000082948 Gm24202 snRNA Interval_147953 chr7 75835638 75836392 + 0 NA Intergenic Intergenic -12382 ENSMUSG00000055652.14 ENSMUSG00000055652 ENSMUST00000205887 Klhl25 protein_coding Interval_62352 chr15 90940160 90940545 + 0 NA intron (ENSMUSG00000022629.17, intron 4 of 4) protein_coding-intron (ENSMUSG00000022629.17, intron 32 of 35) 10954 ENSMUSG00000022629.17 ENSMUSG00000022629 ENSMUST00000229801 Kif21a protein_coding Interval_108358 chr3 125540659 125540909 + 0 NA intron (ENSMUSG00000027971.16, intron 2 of 13) protein_coding-intron (ENSMUSG00000027971.16, intron 1 of 5) -169302 ENSMUSG00000027971.16 ENSMUSG00000027971 ENSMUST00000198101 Ndst4 protein_coding Interval_154978 chr8 25454628 25456041 + 0 NA TTS (ENSMUSG00000074412.4) processed_pseudogene-TTS (ENSMUSG00000074412.4) 1061 ENSMUSG00000074412.4 ENSMUSG00000074412 ENSMUST00000098864 Gm10689 processed_pseudogene Interval_139700 chr6 107386342 107386772 + 0 NA Intergenic Intergenic -40556 ENSMUSG00000107697.1 ENSMUSG00000107697 ENSMUST00000205043 Gm44399 processed_pseudogene Interval_170506 chr9 108370767 108371035 + 0 NA TTS (ENSMUSG00000032612.14) protein_coding-TTS (ENSMUSG00000032612.14) -10470 ENSMUSG00000032612.14 ENSMUSG00000032612 ENSMUST00000194939 Usp4 protein_coding Interval_106802 chr3 100963814 100964628 + 0 NA intron (ENSMUSG00000033222.16, intron 3 of 16) protein_coding-intron (ENSMUSG00000033222.16, intron 3 of 22) -4226 ENSMUSG00000033222.16 ENSMUSG00000033222 ENSMUST00000200506 Ttf2 protein_coding Interval_162996 chr9 14354608 14355170 + 0 NA exon (ENSMUSG00000037419.9, exon 2 of 2) protein_coding-exon (ENSMUSG00000037419.9, exon 2 of 2) 19277 ENSMUSG00000111555.1 ENSMUSG00000111555 ENSMUST00000216728 Gm47326 lincRNA Interval_68004 chr16 63014659 63015016 + 0 NA intron (ENSMUSG00000116574.1, intron 3 of 4) lincRNA-intron (ENSMUSG00000116574.1, intron 3 of 4) 11399 ENSMUSG00000116574.1 ENSMUSG00000116574 ENSMUST00000231727 Gm18870 lincRNA Interval_149166 chr7 95688902 95689095 + 0 NA Intergenic Intergenic 214052 ENSMUSG00000108429.1 ENSMUSG00000108429 ENSMUST00000206820 Gm44603 processed_pseudogene Interval_23426 chr11 22565352 22565782 + 0 NA Intergenic Intergenic -51841 ENSMUSG00000086256.1 ENSMUSG00000086256 ENSMUST00000142151 Gm12052 lincRNA Interval_168876 chr9 88290325 88290605 + 0 NA Intergenic Intergenic 3741 ENSMUSG00000111795.1 ENSMUSG00000111795 ENSMUST00000215074 Gm47620 processed_pseudogene Interval_102333 chr3 21969841 21970411 + 0 NA Intergenic Intergenic 28342 ENSMUSG00000106321.1 ENSMUSG00000106321 ENSMUST00000196313 Gm43674 lincRNA Interval_89058 chr2 15136114 15136330 + 0 NA Intergenic Intergenic 8622 ENSMUSG00000083860.2 ENSMUSG00000083860 ENSMUST00000118938 Gm13313 processed_pseudogene Interval_106320 chr3 95343344 95344469 + 0 NA intron (ENSMUSG00000015697.14, intron 8 of 11) protein_coding-intron (ENSMUSG00000015697.14, intron 8 of 21) -8878 ENSMUSG00000105860.1 ENSMUSG00000105860 ENSMUST00000199960 Gm42578 processed_pseudogene Interval_134143 chr6 21804728 21805605 + 0 NA intron (ENSMUSG00000029669.14, intron 5 of 5) protein_coding-intron (ENSMUSG00000029669.14, intron 6 of 8) 46662 ENSMUSG00000029669.14 ENSMUSG00000029669 ENSMUST00000202353 Tspan12 protein_coding Interval_169623 chr9 99504087 99504376 + 0 NA intron (ENSMUSG00000032468.11, intron 14 of 21) protein_coding-intron (ENSMUSG00000032468.11, intron 14 of 21) 52756 ENSMUSG00000046242.8 ENSMUSG00000046242 ENSMUST00000056103 Nme9 protein_coding Interval_119005 chr4 134955929 134956589 + 0 NA Intergenic Intergenic 25357 ENSMUSG00000028821.8 ENSMUSG00000028821 ENSMUST00000144037 Syf2 protein_coding Interval_26284 chr11 55726064 55726296 + 0 NA Intergenic Intergenic -45908 ENSMUSG00000086020.1 ENSMUSG00000086020 ENSMUST00000134285 Gm12239 antisense Interval_14098 chr10 26958439 26959122 + 0 NA intron (ENSMUSG00000112751.1, intron 2 of 3) antisense-intron (ENSMUSG00000112751.1, intron 2 of 3) -7305 ENSMUSG00000112804.1 ENSMUSG00000112804 ENSMUST00000217928 Gm30534 processed_pseudogene Interval_52472 chr14 46795129 46795398 + 0 NA Intergenic Intergenic 7630 ENSMUSG00000115003.1 ENSMUSG00000115003 ENSMUST00000226700 Gm48933 antisense Interval_126414 chr5 88291057 88291867 + 0 NA Intergenic Intergenic 22543 ENSMUSG00000090302.1 ENSMUSG00000090302 ENSMUST00000169154 Gm7714 protein_coding Interval_133951 chr6 16365491 16365866 + 0 NA Intergenic Intergenic 104272 ENSMUSG00000108295.2 ENSMUSG00000108295 ENSMUST00000203052 Gm36406 processed_transcript Interval_47669 chr13 90987128 90987354 + 0 NA intron (ENSMUSG00000021619.6, intron 4 of 6) protein_coding-intron (ENSMUSG00000021619.6, intron 5 of 7) 64024 ENSMUSG00000049517.8 ENSMUSG00000049517 ENSMUST00000224430 Rps23 protein_coding Interval_68067 chr16 64833302 64834096 + 0 NA intron (ENSMUSG00000047141.5, intron 1 of 8) protein_coding-intron (ENSMUSG00000047141.5, intron 1 of 8) 17953 ENSMUSG00000047141.5 ENSMUSG00000047141 ENSMUST00000052588 Zfp654 protein_coding Interval_15735 chr10 55376810 55377034 + 0 NA Intergenic Intergenic 252560 ENSMUSG00000112755.1 ENSMUSG00000112755 ENSMUST00000219650 Gm46190 processed_pseudogene Interval_18287 chr10 84590362 84592693 + 0 NA intron (ENSMUSG00000020034.7, intron 5 of 5) protein_coding-intron (ENSMUSG00000020034.7, intron 5 of 9) 14630 ENSMUSG00000020034.7 ENSMUSG00000020034 ENSMUST00000160057 Tcp11l2 protein_coding Interval_60071 chr15 64528502 64529489 + 0 NA Intergenic Intergenic 104513 ENSMUSG00000115328.1 ENSMUSG00000115328 ENSMUST00000227641 Gm30691 lincRNA Interval_67053 chr16 42207422 42207822 + 0 NA Intergenic Intergenic -10220 ENSMUSG00000116990.1 ENSMUSG00000116990 ENSMUST00000231310 Gm49738 processed_pseudogene Interval_142061 chr6 136857358 136857811 + 0 NA exon (ENSMUSG00000030217.2, exon 1 of 3) protein_coding-exon (ENSMUSG00000030217.2, exon 1 of 3) 149 ENSMUSG00000030217.2 ENSMUSG00000030217 ENSMUST00000032341 Art4 protein_coding Interval_111199 chr4 14693056 14693653 + 0 NA intron (ENSMUSG00000023151.9, intron 3 of 3) protein_coding-intron (ENSMUSG00000023151.9, intron 7 of 8) 63491 ENSMUSG00000023151.9 ENSMUSG00000023151 ENSMUST00000108276 Lrrc69 protein_coding Interval_1328 chr1 20705127 20705839 + 0 NA Intergenic Intergenic 22714 ENSMUSG00000065480.1 ENSMUSG00000065480 ENSMUST00000083546 Mir133b miRNA Interval_118694 chr4 133226529 133226734 + 0 NA Intergenic Intergenic 13725 ENSMUSG00000028865.14 ENSMUSG00000028865 ENSMUST00000134713 Cd164l2 protein_coding Interval_11002 chr1 177987530 177988225 + 0 NA intron (ENSMUSG00000091476.8, intron 1 of 19) protein_coding-intron (ENSMUSG00000091476.8, intron 1 of 19) -3559 ENSMUSG00000091476.8 ENSMUSG00000091476 ENSMUST00000239155 Catspere2 protein_coding Interval_82792 chr18 77093062 77093713 + 0 NA intron (ENSMUSG00000025423.16, intron 1 of 13) protein_coding-intron (ENSMUSG00000025423.16, intron 1 of 12) 28142 ENSMUSG00000025423.16 ENSMUSG00000025423 ENSMUST00000168882 Pias2 protein_coding Interval_41767 chr12 118876321 118876603 + 0 NA intron (ENSMUSG00000072791.11, intron 24 of 27) protein_coding-intron (ENSMUSG00000072791.11, intron 24 of 27) 14297 ENSMUSG00000072791.11 ENSMUSG00000072791 ENSMUST00000100982 Abcb5 protein_coding Interval_80112 chr18 37691412 37692124 + 0 NA exon (ENSMUSG00000102748.1, exon 1 of 1) protein_coding-exon (ENSMUSG00000102748.1, exon 1 of 1) 1940 ENSMUSG00000102748.1 ENSMUSG00000102748 ENSMUST00000193631 Pcdhgb2 protein_coding Interval_150314 chr7 109552873 109553162 + 0 NA TTS (ENSMUSG00000031024.13) protein_coding-TTS (ENSMUSG00000031024.13) 31737 ENSMUSG00000077575.1 ENSMUSG00000077575 ENSMUST00000104387 Gm24888 snoRNA Interval_72351 chr17 29360692 29362409 + 0 NA intron (ENSMUSG00000024013.15, intron 1 of 4) protein_coding-intron (ENSMUSG00000024013.15, intron 1 of 15) -11801 ENSMUSG00000024013.15 ENSMUSG00000024013 ENSMUST00000144616 Fgd2 protein_coding Interval_88972 chr2 13792660 13794031 + 0 NA promoter-TSS (ENSMUSG00000003418.11) protein_coding-promoter-TSS (ENSMUSG00000003418.11) -52 ENSMUSG00000003418.11 ENSMUSG00000003418 ENSMUST00000150781 St8sia6 protein_coding Interval_96971 chr2 130169755 130169948 + 0 NA Intergenic Intergenic 9483 ENSMUSG00000027404.15 ENSMUSG00000027404 ENSMUST00000150835 Snrpb protein_coding Interval_126256 chr5 84415981 84417916 + 0 NA promoter-TSS (ENSMUSG00000029245.16) protein_coding-promoter-TSS (ENSMUSG00000029245.16) -11857 ENSMUSG00000106598.1 ENSMUSG00000106598 ENSMUST00000199389 Gm43532 lincRNA Interval_65948 chr16 30442935 30445505 + 0 NA Intergenic Intergenic -8368 ENSMUSG00000116960.1 ENSMUSG00000116960 ENSMUST00000231864 Gm49679 processed_pseudogene Interval_148495 chr7 81762199 81763800 + 0 NA promoter-TSS (ENSMUSG00000038646.13) protein_coding-promoter-TSS (ENSMUSG00000038646.13) -51 ENSMUSG00000038646.13 ENSMUSG00000038646 ENSMUST00000118190 Ramac protein_coding Interval_554 chr1 7291028 7291880 + 0 NA Intergenic Intergenic -23997 ENSMUSG00000102768.1 ENSMUSG00000102768 ENSMUST00000192649 Gm19002 processed_pseudogene Interval_6670 chr1 118650360 118650892 + 0 NA TTS (ENSMUSG00000101624.1) processed_pseudogene-TTS (ENSMUSG00000101624.1) 1169 ENSMUSG00000101624.1 ENSMUSG00000101624 ENSMUST00000185504 Gm28882 processed_pseudogene Interval_44497 chr13 45402123 45402550 + 0 NA intron (ENSMUSG00000038175.10, intron 2 of 6) protein_coding-intron (ENSMUSG00000038175.10, intron 2 of 6) 11409 ENSMUSG00000038175.10 ENSMUSG00000038175 ENSMUST00000222178 Mylip protein_coding Interval_134038 chr6 17925182 17925434 + 0 NA intron (ENSMUSG00000029534.17, intron 12 of 12) protein_coding-intron (ENSMUSG00000029534.17, intron 12 of 14) 10312 ENSMUSG00000106858.1 ENSMUSG00000106858 ENSMUST00000202926 Gm43844 TEC Interval_126273 chr5 85848438 85848776 + 0 NA Intergenic Intergenic 18980 ENSMUSG00000064555.1 ENSMUSG00000064555 ENSMUST00000082621 Gm24626 snRNA Interval_58935 chr15 40176487 40178105 + 0 NA Intergenic Intergenic 8803 ENSMUSG00000092855.1 ENSMUSG00000092855 ENSMUST00000175114 Gm25958 miRNA Interval_164494 chr9 37469347 37469530 + 0 NA Intergenic Intergenic 9205 ENSMUSG00000111702.1 ENSMUSG00000111702 ENSMUST00000214167 Gm47945 unprocessed_pseudogene Interval_4784 chr1 78616089 78616555 + 0 NA intron (ENSMUSG00000100562.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000100562.1, intron 1 of 1) 855 ENSMUSG00000100562.1 ENSMUSG00000100562 ENSMUST00000186132 Gm29611 lincRNA Interval_38680 chr12 80991137 80991678 + 0 NA Intergenic Intergenic -23329 ENSMUSG00000021135.8 ENSMUSG00000021135 ENSMUST00000220266 Slc10a1 protein_coding Interval_116856 chr4 117729257 117729961 + 0 NA promoter-TSS (ENSMUSG00000084260.1) processed_pseudogene-promoter-TSS (ENSMUSG00000084260.1) -310 ENSMUSG00000084260.1 ENSMUSG00000084260 ENSMUST00000119463 Gm12844 processed_pseudogene Interval_164613 chr9 40052495 40053031 + 0 NA exon (ENSMUSG00000101963.2, exon 1 of 1) transcribed_processed_pseudogene-exon (ENSMUSG00000101963.2, exon 1 of 1) 2197 ENSMUSG00000101963.2 ENSMUSG00000101963 ENSMUST00000190330 1700001J11Rik transcribed_processed_pseudogene Interval_111411 chr4 21287605 21288353 + 0 NA Intergenic Intergenic 17904 ENSMUSG00000088073.1 ENSMUSG00000088073 ENSMUST00000157448 Gm22817 ribozyme Interval_24050 chr11 29788813 29789191 + 0 NA intron (ENSMUSG00000044072.14, intron 24 of 41) protein_coding-intron (ENSMUSG00000044072.14, intron 24 of 41) 14097 ENSMUSG00000044072.14 ENSMUSG00000044072 ENSMUST00000109452 Eml6 protein_coding Interval_52065 chr14 35008904 35009491 + 0 NA intron (ENSMUSG00000041078.7, intron 3 of 15) protein_coding-intron (ENSMUSG00000041078.7, intron 3 of 15) 114588 ENSMUSG00000065481.1 ENSMUSG00000065481 ENSMUST00000083547 Mir346 miRNA Interval_146703 chr7 49556193 49557661 + 0 NA TTS (ENSMUSG00000052512.17) protein_coding-TTS (ENSMUSG00000052512.17) 79922 ENSMUSG00000030507.6 ENSMUSG00000030507 ENSMUST00000032717 Dbx1 protein_coding Interval_2916 chr1 49879198 49879773 + 0 NA Intergenic Intergenic -177297 ENSMUSG00000101760.1 ENSMUSG00000101760 ENSMUST00000190905 Gm8384 processed_pseudogene Interval_167926 chr9 74368863 74370141 + 0 NA Intergenic Intergenic -4439 ENSMUSG00000098313.1 ENSMUSG00000098313 ENSMUST00000183844 Nr1h2-ps processed_pseudogene Interval_25456 chr11 48706685 48707965 + 0 NA Intergenic Intergenic 22616 ENSMUSG00000088425.1 ENSMUSG00000088425 ENSMUST00000157800 Gm24422 snoRNA Interval_138488 chr6 88592170 88592507 + 0 NA intron (ENSMUSG00000033182.12, intron 3 of 4) protein_coding-intron (ENSMUSG00000033182.12, intron 4 of 5) 26184 ENSMUSG00000033182.12 ENSMUSG00000033182 ENSMUST00000184664 Kbtbd12 protein_coding Interval_34605 chr12 7543404 7544239 + 0 NA intron (ENSMUSG00000112323.1, intron 4 of 5) lincRNA-intron (ENSMUSG00000112323.1, intron 4 of 5) -125697 ENSMUSG00000112754.1 ENSMUSG00000112754 ENSMUST00000218817 Gm9139 processed_pseudogene Interval_137754 chr6 82098346 82098899 + 0 NA Intergenic Intergenic -46041 ENSMUSG00000087136.1 ENSMUSG00000087136 ENSMUST00000145950 Gm15864 antisense Interval_98741 chr2 154624361 154624790 + 0 NA intron (ENSMUSG00000059842.12, intron 2 of 13) protein_coding-intron (ENSMUSG00000059842.12, intron 2 of 14) 8061 ENSMUSG00000085483.1 ENSMUSG00000085483 ENSMUST00000153208 Gm14198 antisense Interval_163227 chr9 18713481 18713724 + 0 NA Intergenic Intergenic 34474 ENSMUSG00000089277.1 ENSMUSG00000089277 ENSMUST00000158652 Gm24546 snRNA Interval_42506 chr13 14253288 14254222 + 0 NA intron (ENSMUSG00000021301.9, intron 15 of 17) protein_coding-intron (ENSMUSG00000021301.9, intron 23 of 28) -31817 ENSMUSG00000113563.1 ENSMUSG00000113563 ENSMUST00000221355 Gm2492 processed_pseudogene Interval_129417 chr5 119893095 119893446 + 0 NA Intergenic Intergenic -21668 ENSMUSG00000107084.1 ENSMUSG00000107084 ENSMUST00000202075 Gm43269 lincRNA Interval_145707 chr7 37567645 37567834 + 0 NA intron (ENSMUSG00000043456.17, intron 1 of 3) protein_coding-intron (ENSMUSG00000043456.17, intron 4 of 5) 651 ENSMUSG00000043456.17 ENSMUSG00000043456 ENSMUST00000206332 Zfp536 protein_coding Interval_131759 chr5 139708181 139708528 + 0 NA intron (ENSMUSG00000036718.17, intron 15 of 16) protein_coding-intron (ENSMUSG00000036718.17, intron 15 of 16) 6707 ENSMUSG00000104637.1 ENSMUSG00000104637 ENSMUST00000198319 Gm42424 processed_pseudogene Interval_6735 chr1 119063915 119065837 + 0 NA Intergenic Intergenic 6407 ENSMUSG00000097408.1 ENSMUSG00000097408 ENSMUST00000181458 Gm26831 lincRNA Interval_50060 chr14 6888513 6890511 + 0 NA intron (ENSMUSG00000090691.3, intron 1 of 6) protein_coding-intron (ENSMUSG00000090691.3, intron 1 of 6) 450 ENSMUSG00000090691.3 ENSMUSG00000090691 ENSMUST00000171906 Gm3667 protein_coding Interval_69088 chr16 90537513 90537765 + 0 NA Intergenic Intergenic 12970 ENSMUSG00000116753.1 ENSMUSG00000116753 ENSMUST00000232652 Gm36001 lincRNA Interval_51171 chr14 24440322 24440564 + 0 NA exon (ENSMUSG00000114575.1, exon 2 of 3) lincRNA-exon (ENSMUSG00000114575.1, exon 2 of 3) 5960 ENSMUSG00000114575.1 ENSMUSG00000114575 ENSMUST00000224174 Gm47814 lincRNA Interval_87973 chr19 57473172 57473518 + 0 NA intron (ENSMUSG00000025086.13, intron 3 of 3) protein_coding-intron (ENSMUSG00000025086.13, intron 4 of 6) 20388 ENSMUSG00000025086.13 ENSMUSG00000025086 ENSMUST00000238107 Trub1 protein_coding Interval_110942 chr4 10667895 10668113 + 0 NA intron (ENSMUSG00000086080.7, intron 1 of 3) lincRNA-intron (ENSMUSG00000086080.7, intron 1 of 3) 87192 ENSMUSG00000081361.1 ENSMUSG00000081361 ENSMUST00000118586 Gm11813 processed_pseudogene Interval_95986 chr2 118962643 118963068 + 0 NA Intergenic Intergenic -34213 ENSMUSG00000084802.1 ENSMUSG00000084802 ENSMUST00000130025 Gm14089 antisense Interval_168732 chr9 86521444 86521672 + 0 NA exon (ENSMUSG00000034973.16, exon 19 of 37) protein_coding-exon (ENSMUSG00000034973.16, exon 19 of 37) 25237 ENSMUSG00000103731.1 ENSMUSG00000103731 ENSMUST00000194336 Gm17530 TEC Interval_92651 chr2 62000542 62001967 + 0 NA Intergenic Intergenic -30582 ENSMUSG00000083018.1 ENSMUSG00000083018 ENSMUST00000121668 Gm13555 processed_pseudogene Interval_4934 chr1 82795050 82796796 + 0 NA Intergenic Intergenic 11545 ENSMUSG00000102280.1 ENSMUSG00000102280 ENSMUST00000192756 Gm36999 TEC Interval_135836 chr6 47803079 47803424 + 0 NA TTS (ENSMUSG00000076060.1) miRNA-TTS (ENSMUSG00000076060.1) 401 ENSMUSG00000076060.1 ENSMUSG00000076060 ENSMUST00000102106 Mir704 miRNA Interval_123553 chr5 33464730 33465328 + 0 NA Intergenic Intergenic -27565 ENSMUSG00000107248.1 ENSMUSG00000107248 ENSMUST00000200726 Gm43851 lincRNA Interval_81232 chr18 56657071 56657988 + 0 NA Intergenic Intergenic -10249 ENSMUSG00000118275.1 ENSMUSG00000118275 ENSMUST00000235398 Gm50289 processed_pseudogene Interval_2693 chr1 43483784 43484810 + 0 NA intron (ENSMUSG00000066877.11, intron 1 of 4) protein_coding-intron (ENSMUSG00000066877.11, intron 1 of 4) -4150 ENSMUSG00000103422.1 ENSMUSG00000103422 ENSMUST00000194710 Gm37536 TEC Interval_159984 chr8 105585940 105586832 + 0 NA promoter-TSS (ENSMUSG00000110686.1) processed_pseudogene-promoter-TSS (ENSMUSG00000110686.1) -186 ENSMUSG00000110686.1 ENSMUSG00000110686 ENSMUST00000212546 Gm45855 processed_pseudogene Interval_80647 chr18 45207350 45207783 + 0 NA Intergenic Intergenic 8743 ENSMUSG00000118143.1 ENSMUSG00000118143 ENSMUST00000237199 Gm50124 processed_pseudogene Interval_85582 chr19 28806469 28807431 + 0 NA Intergenic Intergenic 6252 ENSMUSG00000098069.1 ENSMUSG00000098069 ENSMUST00000182854 Gm26942 processed_pseudogene Interval_148388 chr7 80964879 80965281 + 0 NA Intergenic Intergenic -14813 ENSMUSG00000109367.1 ENSMUSG00000109367 ENSMUST00000209023 Gm18782 processed_pseudogene Interval_110738 chr4 7744458 7744711 + 0 NA Intergenic Intergenic -15086 ENSMUSG00000085630.1 ENSMUSG00000085630 ENSMUST00000127180 Gm11795 lincRNA Interval_158648 chr8 84949843 84950183 + 0 NA exon (ENSMUSG00000048617.16, exon 2 of 6) protein_coding-exon (ENSMUSG00000048617.16, exon 2 of 6) -1168 ENSMUSG00000048617.16 ENSMUSG00000048617 ENSMUST00000152378 Rtbdn protein_coding Interval_63754 chr15 103250187 103250611 + 0 NA intron (ENSMUSG00000058794.12, intron 2 of 2) protein_coding-intron (ENSMUSG00000058794.12, intron 2 of 2) 1117 ENSMUSG00000058794.12 ENSMUSG00000058794 ENSMUST00000132438 Nfe2 protein_coding Interval_174421 chrX 152015737 152017136 + 0 NA promoter-TSS (ENSMUSG00000025257.5) protein_coding-promoter-TSS (ENSMUSG00000025257.5) 8 ENSMUSG00000041133.11 ENSMUSG00000041133 ENSMUST00000141457 Smc1a protein_coding Interval_168712 chr9 86221970 86222334 + 0 NA Intergenic Intergenic -46137 ENSMUSG00000111418.1 ENSMUSG00000111418 ENSMUST00000216119 Gm18016 processed_pseudogene Interval_65625 chr16 24351660 24351954 + 0 NA intron (ENSMUSG00000115852.2, intron 2 of 4) transcribed_processed_pseudogene-intron (ENSMUSG00000115852.2, intron 2 of 4) 18425 ENSMUSG00000116785.1 ENSMUSG00000116785 ENSMUST00000231939 Gm41434 processed_pseudogene Interval_114898 chr4 86785118 86785352 + 0 NA intron (ENSMUSG00000038024.17, intron 4 of 30) protein_coding-intron (ENSMUSG00000038024.17, intron 5 of 25) 10980 ENSMUSG00000038024.17 ENSMUSG00000038024 ENSMUST00000128710 Dennd4c protein_coding Interval_110355 chr3 157344197 157344848 + 0 NA Intergenic Intergenic -21476 ENSMUSG00000064510.1 ENSMUSG00000064510 ENSMUST00000082576 Gm22458 snRNA Interval_51735 chr14 31781205 31781949 + 0 NA promoter-TSS (ENSMUSG00000014496.8) protein_coding-promoter-TSS (ENSMUSG00000014496.8) -21292 ENSMUSG00000115812.1 ENSMUSG00000115812 ENSMUST00000228722 Gm49309 transcribed_processed_pseudogene Interval_42610 chr13 16761129 16761743 + 0 NA Intergenic Intergenic 98036 ENSMUSG00000087872.1 ENSMUSG00000087872 ENSMUST00000157247 Gm26098 misc_RNA Interval_60509 chr15 74538072 74538656 + 0 NA exon (ENSMUSG00000034730.17, exon 3 of 31) protein_coding-exon (ENSMUSG00000034730.17, exon 3 of 31) -25457 ENSMUSG00000093340.1 ENSMUSG00000093340 ENSMUST00000175599 Gm26117 miRNA Interval_170563 chr9 108723543 108724249 + 0 NA intron (ENSMUSG00000032601.13, intron 4 of 9) protein_coding-intron (ENSMUSG00000032601.13, intron 4 of 10) 14962 ENSMUSG00000065674.1 ENSMUSG00000065674 ENSMUST00000083740 Gm24259 snRNA Interval_3191 chr1 54606720 54607594 + 0 NA Intergenic Intergenic 40454 ENSMUSG00000101130.1 ENSMUSG00000101130 ENSMUST00000185933 Gm19637 processed_pseudogene Interval_46803 chr13 70839715 70840422 + 0 NA promoter-TSS (ENSMUSG00000113771.1) antisense-promoter-TSS (ENSMUSG00000113771.1) -383 ENSMUSG00000113771.1 ENSMUSG00000113771 ENSMUST00000222495 Gm36529 antisense Interval_140333 chr6 116644373 116644889 + 0 NA TTS (ENSMUSG00000042129.8) protein_coding-TTS (ENSMUSG00000042129.8) 1416 ENSMUSG00000098334.1 ENSMUSG00000098334 ENSMUST00000184219 Mir7043 miRNA Interval_145151 chr7 30308203 30309649 + 0 NA promoter-TSS (ENSMUSG00000042831.13) protein_coding-promoter-TSS (ENSMUSG00000042831.13) -2201 ENSMUSG00000042831.13 ENSMUSG00000042831 ENSMUST00000135882 Alkbh6 protein_coding Interval_23027 chr11 19073447 19074594 + 0 NA intron (ENSMUSG00000086025.1, intron 4 of 4) lincRNA-intron (ENSMUSG00000086025.1, intron 4 of 4) 8744 ENSMUSG00000086025.1 ENSMUSG00000086025 ENSMUST00000144854 4933406G16Rik lincRNA Interval_88052 chr19 58448508 58448958 + 0 NA intron (ENSMUSG00000025089.15, intron 3 of 9) protein_coding-intron (ENSMUSG00000025089.15, intron 4 of 10) 5733 ENSMUSG00000025089.15 ENSMUSG00000025089 ENSMUST00000135730 Gfra1 protein_coding Interval_44190 chr13 41760599 41760845 + 0 NA Intergenic Intergenic -40061 ENSMUSG00000085759.1 ENSMUSG00000085759 ENSMUST00000154159 1700061E18Rik antisense Interval_100844 chr2 172848337 172849118 + 0 NA Intergenic Intergenic 15614 ENSMUSG00000093160.1 ENSMUSG00000093160 ENSMUST00000175419 Gm22773 miRNA Interval_89781 chr2 25402314 25403575 + 0 NA promoter-TSS (ENSMUSG00000015094.16) protein_coding-promoter-TSS (ENSMUSG00000015094.16) -504 ENSMUSG00000015094.16 ENSMUSG00000015094 ENSMUST00000138651 Npdc1 protein_coding Interval_119450 chr4 137692223 137692944 + 0 NA intron (ENSMUSG00000041351.16, intron 1 of 6) protein_coding-intron (ENSMUSG00000041351.16, intron 2 of 24) 14023 ENSMUSG00000087476.1 ENSMUSG00000087476 ENSMUST00000135358 Rap1gapos antisense Interval_142070 chr6 136937156 136937497 + 0 NA intron (ENSMUSG00000030220.13, intron 1 of 2) protein_coding-intron (ENSMUSG00000030220.13, intron 1 of 5) 4542 ENSMUSG00000030220.13 ENSMUSG00000030220 ENSMUST00000154440 Arhgdib protein_coding Interval_112866 chr4 45629737 45630508 + 0 NA Intergenic Intergenic -9622 ENSMUSG00000085980.2 ENSMUSG00000085980 ENSMUST00000211200 Gm12408 lincRNA Interval_26093 chr11 54100271 54101769 + 0 NA promoter-TSS (ENSMUSG00000018906.14) protein_coding-promoter-TSS (ENSMUSG00000018906.14) 45 ENSMUSG00000018906.14 ENSMUSG00000018906 ENSMUST00000139315 P4ha2 protein_coding Interval_29116 chr11 80419664 80420396 + 0 NA Intergenic Intergenic -8656 ENSMUSG00000017428.16 ENSMUSG00000017428 ENSMUST00000125591 Psmd11 protein_coding Interval_65564 chr16 23348974 23349887 + 0 NA intron (ENSMUSG00000022885.16, intron 5 of 7) protein_coding-intron (ENSMUSG00000022885.16, intron 5 of 7) 74305 ENSMUSG00000084439.1 ENSMUSG00000084439 ENSMUST00000122490 Gm23430 misc_RNA Interval_120373 chr4 148174101 148174638 + 0 NA Intergenic Intergenic 13748 ENSMUSG00000041556.8 ENSMUSG00000041556 ENSMUST00000047951 Fbxo2 protein_coding Interval_46035 chr13 60466310 60466916 + 0 NA intron (ENSMUSG00000114566.1, intron 2 of 2) lincRNA-intron (ENSMUSG00000114566.1, intron 2 of 2) 14685 ENSMUSG00000114566.1 ENSMUSG00000114566 ENSMUST00000225097 Gm48500 lincRNA Interval_11678 chr1 184614841 184615328 + 0 NA intron (ENSMUSG00000103308.5, intron 2 of 2) lincRNA-intron (ENSMUSG00000103308.5, intron 2 of 2) -2164 ENSMUSG00000102606.1 ENSMUSG00000102606 ENSMUST00000193804 Rpl21-ps1 processed_pseudogene Interval_19772 chr10 108641779 108642080 + 0 NA intron (ENSMUSG00000035864.14, intron 6 of 11) protein_coding-intron (ENSMUSG00000035864.14, intron 5 of 10) 58231 ENSMUSG00000112039.1 ENSMUSG00000112039 ENSMUST00000218023 Gm5136 protein_coding Interval_24038 chr11 29692147 29694320 + 0 NA promoter-TSS (ENSMUSG00000020458.16) protein_coding-promoter-TSS (ENSMUSG00000020458.16) 285 ENSMUSG00000020458.16 ENSMUSG00000020458 ENSMUST00000126162 Rtn4 protein_coding Interval_26051 chr11 53769457 53770873 + 0 NA promoter-TSS (ENSMUSG00000018899.16) protein_coding-promoter-TSS (ENSMUSG00000018899.16) -2988 ENSMUSG00000018899.16 ENSMUSG00000018899 ENSMUST00000153054 Irf1 protein_coding Interval_164286 chr9 35019376 35020144 + 0 NA intron (ENSMUSG00000032036.15, intron 10 of 13) protein_coding-intron (ENSMUSG00000032036.15, intron 11 of 16) 52871 ENSMUSG00000032038.7 ENSMUSG00000032038 ENSMUST00000215463 St3gal4 protein_coding Interval_98260 chr2 150608101 150609571 + 0 NA promoter-TSS (ENSMUSG00000033096.7) protein_coding-promoter-TSS (ENSMUSG00000033096.7) -292 ENSMUSG00000033096.7 ENSMUSG00000033096 ENSMUST00000145325 Apmap protein_coding Interval_19115 chr10 94706175 94707352 + 0 NA intron (ENSMUSG00000020024.7, intron 1 of 3) protein_coding-intron (ENSMUSG00000020024.7, intron 1 of 15) 18045 ENSMUSG00000020024.7 ENSMUSG00000020024 ENSMUST00000218076 Cep83 protein_coding Interval_16758 chr10 67995201 67996383 + 0 NA intron (ENSMUSG00000037846.18, intron 2 of 11) protein_coding-intron (ENSMUSG00000037846.18, intron 2 of 14) 16094 ENSMUSG00000037846.18 ENSMUSG00000037846 ENSMUST00000123147 Rtkn2 protein_coding Interval_126252 chr5 84359653 84360789 + 0 NA exon (ENSMUSG00000029245.16, exon 1 of 1) protein_coding-exon (ENSMUSG00000029245.16, exon 1 of 1) 1845 ENSMUSG00000029245.16 ENSMUSG00000029245 ENSMUST00000200076 Epha5 protein_coding Interval_27605 chr11 69007299 69008854 + 0 NA intron (ENSMUSG00000020899.16, intron 1 of 10) protein_coding-intron (ENSMUSG00000020899.16, intron 1 of 27) 12074 ENSMUSG00000084522.1 ENSMUSG00000084522 ENSMUST00000122573 Gm25819 snRNA Interval_102561 chr3 27780013 27780521 + 0 NA Intergenic Intergenic -69869 ENSMUSG00000039286.12 ENSMUSG00000039286 ENSMUST00000193779 Fndc3b protein_coding Interval_30380 chr11 93988153 93988969 + 0 NA Intergenic Intergenic -20040 ENSMUSG00000037601.11 ENSMUSG00000037601 ENSMUST00000107844 Nme1 protein_coding Interval_100448 chr2 169057974 169058223 + 0 NA Intergenic Intergenic -3022 ENSMUSG00000080415.1 ENSMUSG00000080415 ENSMUST00000116765 Gm26469 miRNA Interval_90640 chr2 31617652 31621048 + 0 NA Intergenic Intergenic 6929 ENSMUSG00000098904.1 ENSMUSG00000098904 ENSMUST00000183343 Mir6998 miRNA Interval_165929 chr9 54740447 54741164 + 0 NA Intergenic Intergenic -16448 ENSMUSG00000061559.15 ENSMUSG00000061559 ENSMUST00000127451 Wdr61 protein_coding Interval_15408 chr10 45632606 45633514 + 0 NA intron (ENSMUSG00000038822.15, intron 5 of 6) protein_coding-intron (ENSMUSG00000038822.15, intron 6 of 23) -23895 ENSMUSG00000111491.1 ENSMUSG00000111491 ENSMUST00000215636 Gm47503 TEC Interval_50054 chr13 120290002 120291092 + 0 NA Intergenic Intergenic -9845 ENSMUSG00000094796.2 ENSMUSG00000094796 ENSMUST00000081558 BC147527 protein_coding Interval_152879 chr7 139426665 139427000 + 0 NA intron (ENSMUSG00000025477.14, intron 1 of 15) protein_coding-intron (ENSMUSG00000025477.14, intron 1 of 15) -89827 ENSMUSG00000025477.14 ENSMUSG00000025477 ENSMUST00000152475 Inpp5a protein_coding Interval_49044 chr13 107287974 107288480 + 0 NA Intergenic Intergenic -8036 ENSMUSG00000114475.1 ENSMUSG00000114475 ENSMUST00000223896 Gm2726 processed_pseudogene Interval_106096 chr3 93018015 93018443 + 0 NA TTS (ENSMUSG00000027912.8) protein_coding-TTS (ENSMUSG00000027912.8) 830 ENSMUSG00000027912.8 ENSMUSG00000027912 ENSMUST00000193944 Lce1m protein_coding Interval_37146 chr12 58958097 58958428 + 0 NA TTS (ENSMUSG00000020986.13) protein_coding-TTS (ENSMUSG00000020986.13) 5173 ENSMUSG00000097443.2 ENSMUSG00000097443 ENSMUST00000180738 Gm17529 antisense Interval_80755 chr18 46849248 46850792 + 0 NA promoter-TSS (ENSMUSG00000024481.5) protein_coding-promoter-TSS (ENSMUSG00000024481.5) -19 ENSMUSG00000024481.5 ENSMUSG00000024481 ENSMUST00000234519 Lvrn protein_coding Interval_117305 chr4 122869801 122870479 + 0 NA TTS (ENSMUSG00000028656.14) protein_coding-TTS (ENSMUSG00000028656.14) 15724 ENSMUSG00000028656.14 ENSMUSG00000028656 ENSMUST00000151041 Cap1 protein_coding Interval_17269 chr10 75446427 75447097 + 0 NA intron (ENSMUSG00000033416.15, intron 2 of 3) protein_coding-intron (ENSMUSG00000033416.15, intron 5 of 8) 4142 ENSMUSG00000084622.1 ENSMUSG00000084622 ENSMUST00000122673 Gm25545 misc_RNA Interval_155324 chr8 31253800 31254227 + 0 NA intron (ENSMUSG00000046152.16, intron 5 of 5) protein_coding-intron (ENSMUSG00000046152.16, intron 4 of 4) 26801 ENSMUSG00000110133.1 ENSMUSG00000110133 ENSMUST00000209631 Gm8168 processed_pseudogene Interval_139554 chr6 100975249 100976481 + 0 NA Intergenic Intergenic 14876 ENSMUSG00000108056.1 ENSMUSG00000108056 ENSMUST00000203303 Gm43941 processed_pseudogene Interval_137071 chr6 67152996 67153302 + 0 NA intron (ENSMUSG00000097603.3, intron 4 of 5) processed_transcript-intron (ENSMUSG00000097603.3, intron 4 of 5) 37472 ENSMUSG00000097603.3 ENSMUSG00000097603 ENSMUST00000054470 A430010J10Rik processed_transcript Interval_123264 chr5 30985344 30986428 + 0 NA Intergenic Intergenic 17224 ENSMUSG00000006642.3 ENSMUSG00000006642 ENSMUST00000006818 Tcf23 protein_coding Interval_96328 chr2 121679883 121680627 + 0 NA intron (ENSMUSG00000027238.17, intron 1 of 7) protein_coding-intron (ENSMUSG00000027238.17, intron 1 of 13) 21470 ENSMUSG00000081264.1 ENSMUSG00000081264 ENSMUST00000117683 Gm14021 processed_pseudogene Interval_37847 chr12 72496612 72497112 + 0 NA intron (ENSMUSG00000021090.16, intron 24 of 32) protein_coding-intron (ENSMUSG00000021090.16, intron 24 of 24) -20895 ENSMUSG00000106138.1 ENSMUSG00000106138 ENSMUST00000196758 Gm44392 miRNA Interval_32088 chr11 105196932 105197444 + 0 NA intron (ENSMUSG00000020694.17, intron 2 of 5) protein_coding-intron (ENSMUSG00000020694.17, intron 2 of 20) -11665 ENSMUSG00000020694.17 ENSMUSG00000020694 ENSMUST00000146910 Tlk2 protein_coding Interval_167635 chr9 71453515 71454292 + 0 NA Intergenic Intergenic 32002 ENSMUSG00000032199.13 ENSMUSG00000032199 ENSMUST00000233263 Polr2m protein_coding Interval_174657 chrX 162679172 162680266 + 0 NA TTS (ENSMUSG00000083963.1) processed_pseudogene-TTS (ENSMUSG00000083963.1) 712 ENSMUSG00000083963.1 ENSMUSG00000083963 ENSMUST00000117668 Gm15203 processed_pseudogene Interval_173139 chrX 73353402 73354348 + 0 NA exon (ENSMUSG00000031365.13, exon 6 of 6) protein_coding-exon (ENSMUSG00000031365.13, exon 6 of 6) 9407 ENSMUSG00000031365.13 ENSMUSG00000031365 ENSMUST00000139996 Zfp275 protein_coding Interval_154393 chr8 15545782 15545987 + 0 NA Intergenic Intergenic 8302 ENSMUSG00000109839.1 ENSMUSG00000109839 ENSMUST00000209975 Gm45677 TEC Interval_126478 chr5 88819441 88819633 + 0 NA Intergenic Intergenic -14314 ENSMUSG00000106305.1 ENSMUSG00000106305 ENSMUST00000199360 Gm42911 processed_pseudogene Interval_155706 chr8 36289277 36289561 + 0 NA Intergenic Intergenic -39903 ENSMUSG00000039633.7 ENSMUSG00000039633 ENSMUST00000065297 Lonrf1 protein_coding Interval_120483 chr4 148890582 148892123 + 0 NA exon (ENSMUSG00000028977.17, exon 3 of 3) protein_coding-exon (ENSMUSG00000028977.17, exon 3 of 3) 22972 ENSMUSG00000086766.1 ENSMUSG00000086766 ENSMUST00000151967 Gm15969 antisense Interval_133283 chr5 151141572 151143022 + 0 NA intron (ENSMUSG00000107011.1, intron 2 of 5) protein_coding-intron (ENSMUSG00000016128.14, intron 1 of 13) -33562 ENSMUSG00000016128.14 ENSMUSG00000016128 ENSMUST00000202866 Stard13 protein_coding Interval_143071 chr6 149069030 149070886 + 0 NA intron (ENSMUSG00000030313.15, intron 2 of 13) protein_coding-intron (ENSMUSG00000030313.15, intron 2 of 20) -2746 ENSMUSG00000082829.1 ENSMUSG00000082829 ENSMUST00000121283 Gm15780 processed_pseudogene Interval_94006 chr2 80638187 80640099 + 0 NA promoter-TSS (ENSMUSG00000026999.14) protein_coding-promoter-TSS (ENSMUSG00000026999.14) -121 ENSMUSG00000026999.14 ENSMUSG00000026999 ENSMUST00000127926 Nup35 protein_coding Interval_23986 chr11 29195309 29195669 + 0 NA intron (ENSMUSG00000020463.15, intron 5 of 11) protein_coding-intron (ENSMUSG00000020463.15, intron 5 of 15) 21742 ENSMUSG00000020463.15 ENSMUSG00000020463 ENSMUST00000148759 Ppp4r3b protein_coding Interval_10038 chr1 165281502 165282885 + 0 NA Intergenic Intergenic -13596 ENSMUSG00000040836.15 ENSMUSG00000040836 ENSMUST00000111450 Gpr161 protein_coding Interval_114887 chr4 86713651 86713862 + 0 NA Intergenic Intergenic -55073 ENSMUSG00000028494.12 ENSMUSG00000028494 ENSMUST00000134094 Plin2 protein_coding Interval_36785 chr12 53925498 53925724 + 0 NA intron (ENSMUSG00000021010.9, intron 4 of 10) protein_coding-intron (ENSMUSG00000021010.9, intron 5 of 11) 153781 ENSMUSG00000099407.1 ENSMUSG00000099407 ENSMUST00000185390 1700060O08Rik antisense Interval_160739 chr8 111898440 111899103 + 0 NA intron (ENSMUSG00000031952.5, intron 1 of 1) protein_coding-intron (ENSMUSG00000031952.5, intron 1 of 1) 11676 ENSMUSG00000031952.5 ENSMUSG00000031952 ENSMUST00000034430 Chst5 protein_coding Interval_132335 chr5 144263159 144264415 + 0 NA TTS (ENSMUSG00000038859.7) protein_coding-TTS (ENSMUSG00000038859.7) -7601 ENSMUSG00000087484.1 ENSMUSG00000087484 ENSMUST00000153130 2900089D17Rik antisense Interval_133353 chr6 3612651 3612842 + 0 NA Intergenic Intergenic 24695 ENSMUSG00000001376.17 ENSMUSG00000001376 ENSMUST00000184411 Vps50 protein_coding Interval_78723 chr18 19084246 19084976 + 0 NA Intergenic Intergenic -48606 ENSMUSG00000117378.1 ENSMUSG00000117378 ENSMUST00000234128 Gm31086 lincRNA Interval_26203 chr11 55066784 55067141 + 0 NA intron (ENSMUSG00000049588.13, intron 1 of 5) protein_coding-intron (ENSMUSG00000049588.13, intron 1 of 6) 11169 ENSMUSG00000049588.13 ENSMUSG00000049588 ENSMUST00000108880 Ccdc69 protein_coding Interval_142701 chr6 145057875 145058275 + 0 NA intron (ENSMUSG00000086643.1, intron 1 of 1) protein_coding-intron (ENSMUSG00000030268.17, intron 1 of 9) 1686 ENSMUSG00000086643.1 ENSMUSG00000086643 ENSMUST00000141440 Gm15687 antisense Interval_3845 chr1 63530910 63531158 + 0 NA exon (ENSMUSG00000025964.15, exon 6 of 6) protein_coding-exon (ENSMUSG00000025964.15, exon 6 of 6) 44556 ENSMUSG00000087823.1 ENSMUSG00000087823 ENSMUST00000157198 Gm22281 snRNA Interval_47461 chr13 84685885 84686158 + 0 NA Intergenic Intergenic 4920 ENSMUSG00000098081.1 ENSMUSG00000098081 ENSMUST00000182391 Gm26913 processed_pseudogene Interval_101807 chr3 9641840 9642526 + 0 NA Intergenic Intergenic -14337 ENSMUSG00000103876.1 ENSMUSG00000103876 ENSMUST00000195844 Gm17806 processed_pseudogene Interval_1449 chr1 23610220 23610451 + 0 NA Intergenic Intergenic 35748 ENSMUSG00000099503.1 ENSMUSG00000099503 ENSMUST00000191140 Gm28822 lincRNA Interval_44760 chr13 48323996 48324933 + 0 NA Intergenic Intergenic 11794 ENSMUSG00000114881.1 ENSMUSG00000114881 ENSMUST00000225756 Gm8588 processed_pseudogene Interval_32161 chr11 105819585 105820218 + 0 NA intron (ENSMUSG00000053580.16, intron 8 of 25) protein_coding-intron (ENSMUSG00000053580.16, intron 8 of 25) 46383 ENSMUSG00000083465.1 ENSMUSG00000083465 ENSMUST00000117842 Gm11652 processed_pseudogene Interval_143747 chr7 16033632 16034413 + 0 NA intron (ENSMUSG00000070808.4, intron 1 of 14) protein_coding-intron (ENSMUSG00000070808.4, intron 1 of 14) 13899 ENSMUSG00000070808.4 ENSMUSG00000070808 ENSMUST00000209251 Bicra protein_coding Interval_90370 chr2 30044061 30044781 + 0 NA intron (ENSMUSG00000039715.8, intron 1 of 8) protein_coding-intron (ENSMUSG00000039715.8, intron 1 of 8) 4440 ENSMUSG00000039715.8 ENSMUSG00000039715 ENSMUST00000146275 Wdr34 protein_coding Interval_9971 chr1 164457620 164459227 + 0 NA promoter-TSS (ENSMUSG00000026576.12) protein_coding-promoter-TSS (ENSMUSG00000026576.12) -4019 ENSMUSG00000104011.1 ENSMUSG00000104011 ENSMUST00000191839 Gm32391 lincRNA Interval_11074 chr1 179177162 179177782 + 0 NA intron (ENSMUSG00000055067.15, intron 5 of 11) protein_coding-intron (ENSMUSG00000055067.15, intron 2 of 8) -259858 ENSMUSG00000089713.1 ENSMUSG00000089713 ENSMUST00000162545 Gm16564 antisense Interval_5248 chr1 86757941 86758608 + 0 NA intron (ENSMUSG00000053333.15, intron 4 of 20) protein_coding-intron (ENSMUSG00000053333.15, intron 4 of 20) 7091 ENSMUSG00000100225.1 ENSMUSG00000100225 ENSMUST00000190273 Gm29097 processed_pseudogene Interval_111879 chr4 32218589 32218928 + 0 NA Intergenic Intergenic 11610 ENSMUSG00000083564.1 ENSMUSG00000083564 ENSMUST00000118175 Gm11929 processed_pseudogene Interval_52394 chr14 45573609 45573848 + 0 NA intron (ENSMUSG00000115553.1, intron 1 of 1) antisense-intron (ENSMUSG00000085913.2, intron 1 of 2) 8197 ENSMUSG00000115553.1 ENSMUSG00000115553 ENSMUST00000228948 Gm49124 lincRNA Interval_142057 chr6 136827401 136828819 + 0 NA promoter-TSS (ENSMUSG00000047515.8) protein_coding-promoter-TSS (ENSMUSG00000047515.8) 26 ENSMUSG00000030216.12 ENSMUSG00000030216 ENSMUST00000146348 Wbp11 protein_coding Interval_99321 chr2 158934117 158934331 + 0 NA Intergenic Intergenic 106806 ENSMUSG00000027655.14 ENSMUSG00000027655 ENSMUST00000143195 Dhx35 protein_coding Interval_10021 chr1 165119722 165120957 + 0 NA Intergenic Intergenic -28411 ENSMUSG00000102408.1 ENSMUSG00000102408 ENSMUST00000195635 4930568G15Rik lincRNA Interval_105192 chr3 83714720 83715016 + 0 NA Intergenic Intergenic 12616 ENSMUSG00000088597.1 ENSMUSG00000088597 ENSMUST00000157972 Gm24584 snRNA Interval_31389 chr11 100382795 100383247 + 0 NA promoter-TSS (ENSMUSG00000001552.14) protein_coding-promoter-TSS (ENSMUSG00000001552.14) 14742 ENSMUSG00000001552.14 ENSMUSG00000001552 ENSMUST00000123903 Jup protein_coding Interval_10654 chr1 172481299 172482441 + 0 NA promoter-TSS (ENSMUSG00000037995.15) protein_coding-promoter-TSS (ENSMUSG00000037995.15) 6512 ENSMUSG00000026548.4 ENSMUSG00000026548 ENSMUST00000027830 Slamf9 protein_coding Interval_40588 chr12 105863700 105865082 + 0 NA intron (ENSMUSG00000113537.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000113537.1, intron 1 of 2) 129 ENSMUSG00000113537.1 ENSMUSG00000113537 ENSMUST00000221840 Gm48807 lincRNA Interval_40723 chr12 107937420 107937647 + 0 NA intron (ENSMUSG00000048251.15, intron 1 of 1) protein_coding-intron (ENSMUSG00000048251.15, intron 3 of 3) 65881 ENSMUSG00000048251.15 ENSMUSG00000048251 ENSMUST00000109891 Bcl11b protein_coding Interval_84362 chr19 10374873 10375604 + 0 NA Intergenic Intergenic -14245 ENSMUSG00000024743.16 ENSMUSG00000024743 ENSMUST00000235717 Syt7 protein_coding Interval_114023 chr4 62561154 62561670 + 0 NA intron (ENSMUSG00000059810.18, intron 1 of 19) protein_coding-intron (ENSMUSG00000059810.18, intron 1 of 19) 36043 ENSMUSG00000058046.1 ENSMUSG00000058046 ENSMUST00000062145 4933430I17Rik protein_coding Interval_44458 chr13 44939244 44940771 + 0 NA intron (ENSMUSG00000057531.14, intron 6 of 9) protein_coding-intron (ENSMUSG00000057531.14, intron 7 of 9) 62045 ENSMUSG00000057531.14 ENSMUSG00000057531 ENSMUST00000223524 Dtnbp1 protein_coding Interval_149372 chr7 97783238 97783862 + 0 NA Intergenic Intergenic -45261 ENSMUSG00000042797.9 ENSMUSG00000042797 ENSMUST00000205932 Aqp11 protein_coding Interval_138824 chr6 92228931 92230046 + 0 NA Intergenic Intergenic 15162 ENSMUSG00000005892.4 ENSMUSG00000005892 ENSMUST00000006046 Trh protein_coding Interval_126382 chr5 87694488 87695317 + 0 NA exon (ENSMUSG00000063157.9, exon 7 of 9) protein_coding-exon (ENSMUSG00000063157.9, exon 7 of 9) 1754 ENSMUSG00000063157.9 ENSMUSG00000063157 ENSMUST00000199716 Csn2 protein_coding Interval_133597 chr6 7405326 7406116 + 0 NA Intergenic Intergenic 29754 ENSMUSG00000107517.1 ENSMUSG00000107517 ENSMUST00000203145 Gm44046 TEC Interval_83680 chr19 3687705 3688099 + 0 NA Intergenic Intergenic -1341 ENSMUSG00000024913.16 ENSMUSG00000024913 ENSMUST00000176867 Lrp5 protein_coding Interval_87157 chr19 46503489 46504543 + 0 NA intron (ENSMUSG00000025034.9, intron 1 of 5) protein_coding-intron (ENSMUSG00000025034.9, intron 1 of 5) -10644 ENSMUSG00000025034.9 ENSMUSG00000025034 ENSMUST00000235934 Trim8 protein_coding Interval_91070 chr2 34812372 34812906 + 0 NA TTS (ENSMUSG00000035949.15) protein_coding-TTS (ENSMUSG00000035949.15) -12727 ENSMUSG00000070953.13 ENSMUSG00000070953 ENSMUST00000144113 Rabepk protein_coding Interval_72637 chr17 31238405 31238788 + 0 NA intron (ENSMUSG00000042345.15, intron 3 of 4) protein_coding-intron (ENSMUSG00000042345.15, intron 11 of 11) 3113 ENSMUSG00000042345.15 ENSMUSG00000042345 ENSMUST00000237216 Ubash3a protein_coding Interval_121047 chr4 152424545 152425779 + 0 NA intron (ENSMUSG00000028931.12, intron 2 of 14) protein_coding-intron (ENSMUSG00000028931.12, intron 2 of 14) 14362 ENSMUSG00000090057.1 ENSMUSG00000090057 ENSMUST00000161416 Gm16333 antisense Interval_74976 chr17 58764022 58764456 + 0 NA intron (ENSMUSG00000117100.1, intron 3 of 3) lincRNA-intron (ENSMUSG00000117100.1, intron 3 of 3) 39387 ENSMUSG00000117298.1 ENSMUSG00000117298 ENSMUST00000232925 Gm9284 processed_pseudogene Interval_60865 chr15 77229553 77230383 + 0 NA intron (ENSMUSG00000033565.18, intron 1 of 3) protein_coding-intron (ENSMUSG00000033565.18, intron 2 of 12) 12583 ENSMUSG00000089242.1 ENSMUSG00000089242 ENSMUST00000158617 Gm24056 snRNA Interval_78045 chr18 7433369 7434050 + 0 NA intron (ENSMUSG00000057440.8, intron 11 of 14) protein_coding-intron (ENSMUSG00000057440.8, intron 11 of 16) -115278 ENSMUSG00000117556.1 ENSMUSG00000117556 ENSMUST00000234527 Gm18948 processed_pseudogene Interval_8503 chr1 140299866 140300217 + 0 NA intron (ENSMUSG00000052726.16, intron 1 of 27) protein_coding-intron (ENSMUSG00000052726.16, intron 1 of 26) 33554 ENSMUSG00000102698.1 ENSMUSG00000102698 ENSMUST00000195546 Gm37777 TEC Interval_140405 chr6 117890844 117891816 + 0 NA Intergenic Intergenic -7871 ENSMUSG00000099810.1 ENSMUSG00000099810 ENSMUST00000185716 Gm29509 lincRNA Interval_20019 chr10 112059906 112060655 + 0 NA promoter-TSS (ENSMUSG00000020213.6) protein_coding-promoter-TSS (ENSMUSG00000020213.6) 91 ENSMUSG00000020213.6 ENSMUSG00000020213 ENSMUST00000073617 Glipr1l1 protein_coding Interval_133220 chr5 150648854 150649350 + 0 NA promoter-TSS (ENSMUSG00000029655.17) protein_coding-promoter-TSS (ENSMUSG00000029655.17) 17081 ENSMUSG00000029655.17 ENSMUSG00000029655 ENSMUST00000201390 N4bp2l2 protein_coding Interval_18469 chr10 86418394 86418763 + 0 NA intron (ENSMUSG00000059602.14, intron 3 of 8) protein_coding-intron (ENSMUSG00000059602.14, intron 3 of 13) 73319 ENSMUSG00000059602.14 ENSMUSG00000059602 ENSMUST00000139197 Syn3 protein_coding Interval_52456 chr14 46634410 46635551 + 0 NA promoter-TSS (ENSMUSG00000115665.1) lincRNA-promoter-TSS (ENSMUSG00000115665.1) -387 ENSMUSG00000115665.1 ENSMUSG00000115665 ENSMUST00000228452 4933425B07Rik lincRNA Interval_26740 chr11 60122352 60122595 + 0 NA intron (ENSMUSG00000062115.15, intron 1 of 4) protein_coding-intron (ENSMUSG00000062115.15, intron 1 of 5) -7243 ENSMUSG00000051008.5 ENSMUSG00000051008 ENSMUST00000130746 4930412M03Rik lincRNA Interval_63178 chr15 99579115 99579763 + 0 NA exon (ENSMUSG00000023013.5, exon 1 of 4) protein_coding-exon (ENSMUSG00000023013.5, exon 1 of 4) 384 ENSMUSG00000023013.5 ENSMUSG00000023013 ENSMUST00000023752 Aqp2 protein_coding Interval_134420 chr6 28520494 28521055 + 0 NA intron (ENSMUSG00000001424.14, intron 3 of 16) protein_coding-intron (ENSMUSG00000001424.14, intron 3 of 23) 40345 ENSMUSG00000001424.14 ENSMUSG00000001424 ENSMUST00000165151 Snd1 protein_coding Interval_88270 chr2 3146529 3146850 + 0 NA intron (ENSMUSG00000050530.14, intron 1 of 7) protein_coding-intron (ENSMUSG00000050530.14, intron 1 of 7) 28307 ENSMUSG00000050530.14 ENSMUSG00000050530 ENSMUST00000062934 Fam171a1 protein_coding Interval_17846 chr10 80369933 80370241 + 0 NA Intergenic Intergenic -1811 ENSMUSG00000087432.1 ENSMUSG00000087432 ENSMUST00000138988 Gm15123 antisense Interval_126624 chr5 91044234 91044404 + 0 NA Intergenic Intergenic 16855 ENSMUSG00000035020.11 ENSMUSG00000035020 ENSMUST00000041516 Epgn protein_coding Interval_23486 chr11 22897877 22898474 + 0 NA exon (ENSMUSG00000051355.18, exon 3 of 3) protein_coding-exon (ENSMUSG00000051355.18, exon 3 of 3) 29274 ENSMUSG00000065869.1 ENSMUSG00000065869 ENSMUST00000083935 Gm24917 snRNA Interval_68032 chr16 64336195 64336700 + 0 NA Intergenic Intergenic 265961 ENSMUSG00000068167.6 ENSMUSG00000068167 ENSMUST00000089279 Csnka2ip protein_coding Interval_126568 chr5 90325343 90325529 + 0 NA intron (ENSMUSG00000055204.15, intron 1 of 26) protein_coding-intron (ENSMUSG00000055204.15, intron 1 of 33) 40749 ENSMUSG00000055204.15 ENSMUSG00000055204 ENSMUST00000202226 Ankrd17 protein_coding Interval_78864 chr18 21035453 21036299 + 0 NA Intergenic Intergenic 33781 ENSMUSG00000024317.15 ENSMUSG00000024317 ENSMUST00000234169 Rnf138 protein_coding Interval_24597 chr11 35024301 35024772 + 0 NA Intergenic Intergenic 125519 ENSMUSG00000064577.1 ENSMUSG00000064577 ENSMUST00000082643 Gm25799 snRNA Interval_140276 chr6 115993351 115995346 + 0 NA exon (ENSMUSG00000030123.15, exon 1 of 36) protein_coding-exon (ENSMUSG00000030123.15, exon 1 of 36) -37510 ENSMUSG00000030123.15 ENSMUSG00000030123 ENSMUST00000131590 Plxnd1 protein_coding Interval_174068 chrX 134260881 134261590 + 0 NA intron (ENSMUSG00000067369.12, intron 6 of 11) protein_coding-intron (ENSMUSG00000067369.12, intron 6 of 12) 15692 ENSMUSG00000067369.12 ENSMUSG00000067369 ENSMUST00000087540 Trmt2b protein_coding Interval_54000 chr14 64239338 64239611 + 0 NA intron (ENSMUSG00000054733.9, intron 3 of 5) protein_coding-intron (ENSMUSG00000054733.9, intron 8 of 10) 123160 ENSMUSG00000114284.1 ENSMUSG00000114284 ENSMUST00000225122 9630015K15Rik antisense Interval_53024 chr14 53614489 53614931 + 0 NA promoter-TSS (ENSMUSG00000104815.1) TR_V_pseudogene-promoter-TSS (ENSMUSG00000104815.1) -235 ENSMUSG00000104815.1 ENSMUSG00000104815 ENSMUST00000199855 Trav5-2 TR_V_pseudogene Interval_131692 chr5 139331219 139332140 + 0 NA Intergenic Intergenic 19255 ENSMUSG00000098690.1 ENSMUSG00000098690 ENSMUST00000184884 Gm27316 misc_RNA Interval_44040 chr13 40387363 40388473 + 0 NA Intergenic Intergenic -99907 ENSMUSG00000047094.9 ENSMUSG00000047094 ENSMUST00000224813 Ofcc1 protein_coding Interval_115844 chr4 105203386 105204307 + 0 NA intron (ENSMUSG00000028517.8, intron 2 of 5) protein_coding-intron (ENSMUSG00000028517.8, intron 2 of 5) 46499 ENSMUSG00000028517.8 ENSMUSG00000028517 ENSMUST00000064139 Plpp3 protein_coding Interval_34141 chr11 120873396 120873889 + 0 NA promoter-TSS (ENSMUSG00000048445.6) protein_coding-promoter-TSS (ENSMUSG00000048445.6) 29 ENSMUSG00000048445.6 ENSMUSG00000048445 ENSMUST00000143895 Ccdc57 protein_coding Interval_154696 chr8 22652903 22653773 + 0 NA promoter-TSS (ENSMUSG00000031536.6) protein_coding-promoter-TSS (ENSMUSG00000031536.6) 97 ENSMUSG00000031536.6 ENSMUSG00000031536 ENSMUST00000210950 Polb protein_coding Interval_129181 chr5 118032854 118033184 + 0 NA intron (ENSMUSG00000029359.13, intron 1 of 6) protein_coding-intron (ENSMUSG00000029359.13, intron 1 of 7) -3012 ENSMUSG00000029359.13 ENSMUSG00000029359 ENSMUST00000145526 Tesc protein_coding Interval_136668 chr6 57459046 57459417 + 0 NA Intergenic Intergenic -11023 ENSMUSG00000093398.1 ENSMUSG00000093398 ENSMUST00000176097 Vmn1r-ps11 unprocessed_pseudogene Interval_44042 chr13 40426900 40427904 + 0 NA Intergenic Intergenic -68786 ENSMUSG00000114248.1 ENSMUSG00000114248 ENSMUST00000226074 Gm8352 processed_pseudogene Interval_50959 chr14 21120708 21121040 + 0 NA intron (ENSMUSG00000039197.10, intron 3 of 6) protein_coding-intron (ENSMUSG00000039197.10, intron 3 of 10) 68257 ENSMUSG00000039197.10 ENSMUSG00000039197 ENSMUST00000224974 Adk protein_coding Interval_70839 chr17 15228946 15229865 + 0 NA Intergenic Intergenic 18512 ENSMUSG00000097624.2 ENSMUSG00000097624 ENSMUST00000181658 Gm5091 lincRNA Interval_40875 chr12 109016885 109018081 + 0 NA intron (ENSMUSG00000040877.16, intron 4 of 6) protein_coding-intron (ENSMUSG00000040877.16, intron 5 of 7) -25832 ENSMUSG00000113478.1 ENSMUSG00000113478 ENSMUST00000220743 Gm18405 processed_pseudogene Interval_70079 chr17 5163237 5163662 + 0 NA intron (ENSMUSG00000069729.14, intron 4 of 19) protein_coding-intron (ENSMUSG00000069729.14, intron 4 of 18) -51339 ENSMUSG00000081783.2 ENSMUSG00000081783 ENSMUST00000122283 Gm15599 processed_pseudogene Interval_14137 chr10 28008536 28009003 + 0 NA Intergenic Intergenic 57421 ENSMUSG00000112432.1 ENSMUSG00000112432 ENSMUST00000218855 Gm18507 processed_pseudogene Interval_149375 chr7 97803045 97805280 + 0 NA intron (ENSMUSG00000030774.13, intron 1 of 14) protein_coding-intron (ENSMUSG00000030774.13, intron 1 of 1) -65873 ENSMUSG00000042797.9 ENSMUSG00000042797 ENSMUST00000205932 Aqp11 protein_coding Interval_5501 chr1 89313987 89314211 + 0 NA intron (ENSMUSG00000101288.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000101288.1, intron 1 of 2) 44045 ENSMUSG00000101288.1 ENSMUSG00000101288 ENSMUST00000190308 Gm28342 lincRNA Interval_46256 chr13 63074609 63074854 + 0 NA intron (ENSMUSG00000021458.17, intron 1 of 7) protein_coding-intron (ENSMUSG00000021458.17, intron 4 of 15) -59320 ENSMUSG00000113257.1 ENSMUSG00000113257 ENSMUST00000223302 Gm30409 sense_intronic Interval_85140 chr19 23124175 23124492 + 0 NA Intergenic Intergenic -10567 ENSMUSG00000044387.5 ENSMUSG00000044387 ENSMUST00000142712 2410080I02Rik lincRNA Interval_146907 chr7 55767951 55768327 + 0 NA promoter-TSS (ENSMUSG00000051504.18) protein_coding-promoter-TSS (ENSMUSG00000051504.18) -97 ENSMUSG00000051504.18 ENSMUSG00000051504 ENSMUST00000154933 Siglech protein_coding Interval_147889 chr7 75127224 75128600 + 0 NA intron (ENSMUSG00000053025.13, intron 5 of 7) protein_coding-intron (ENSMUSG00000053025.13, intron 9 of 12) 19814 ENSMUSG00000053025.13 ENSMUSG00000053025 ENSMUST00000206236 Sv2b protein_coding Interval_131945 chr5 140981413 140981763 + 0 NA intron (ENSMUSG00000036526.8, intron 1 of 2) protein_coding-intron (ENSMUSG00000036526.8, intron 1 of 24) 18883 ENSMUSG00000036526.8 ENSMUSG00000036526 ENSMUST00000199091 Card11 protein_coding Interval_129785 chr5 122331826 122332532 + 0 NA intron (ENSMUSG00000038569.13, intron 9 of 12) protein_coding-intron (ENSMUSG00000038569.13, intron 9 of 10) 22041 ENSMUSG00000038569.13 ENSMUSG00000038569 ENSMUST00000200653 Rad9b protein_coding Interval_99260 chr2 158498214 158498610 + 0 NA TTS (ENSMUSG00000027652.15) protein_coding-TTS (ENSMUSG00000027652.15) -4327 ENSMUSG00000044405.4 ENSMUSG00000044405 ENSMUST00000148187 Adig protein_coding Interval_47996 chr13 94941400 94941712 + 0 NA Intergenic Intergenic 58956 ENSMUSG00000021685.11 ENSMUSG00000021685 ENSMUST00000184985 Otp protein_coding Interval_116728 chr4 116943906 116944238 + 0 NA intron (ENSMUSG00000033948.3, intron 1 of 13) protein_coding-intron (ENSMUSG00000033948.3, intron 1 of 13) 2462 ENSMUSG00000082207.1 ENSMUSG00000082207 ENSMUST00000122445 Gm12998 processed_pseudogene Interval_3641 chr1 60274677 60274881 + 0 NA intron (ENSMUSG00000073664.11, intron 22 of 27) protein_coding-intron (ENSMUSG00000073664.11, intron 8 of 23) -7151 ENSMUSG00000100516.1 ENSMUSG00000100516 ENSMUST00000190829 Gm29332 processed_pseudogene Interval_80218 chr18 38355693 38355946 + 0 NA promoter-TSS (ENSMUSG00000088384.1) rRNA-promoter-TSS (ENSMUSG00000088384.1) -759 ENSMUSG00000088384.1 ENSMUSG00000088384 ENSMUST00000157759 Gm24690 rRNA Interval_149745 chr7 101096807 101097635 + 0 NA intron (ENSMUSG00000030691.15, intron 1 of 6) protein_coding-intron (ENSMUSG00000030691.15, intron 1 of 6) -35746 ENSMUSG00000109171.1 ENSMUSG00000109171 ENSMUST00000207053 Gm5735 processed_pseudogene Interval_164740 chr9 40937208 40937944 + 0 NA intron (ENSMUSG00000032023.7, intron 3 of 8) protein_coding-intron (ENSMUSG00000032023.7, intron 3 of 8) -7150 ENSMUSG00000111346.1 ENSMUSG00000111346 ENSMUST00000217265 Gm18586 processed_pseudogene Interval_10402 chr1 170446066 170446792 + 0 NA intron (ENSMUSG00000038473.14, intron 2 of 7) protein_coding-intron (ENSMUSG00000038473.14, intron 2 of 3) -125649 ENSMUSG00000038473.14 ENSMUSG00000038473 ENSMUST00000159665 Nos1ap protein_coding Interval_153778 chr8 8457218 8457717 + 0 NA intron (ENSMUSG00000109127.1, intron 1 of 3) lincRNA-intron (ENSMUSG00000109127.1, intron 1 of 3) -2038 ENSMUSG00000108913.1 ENSMUSG00000108913 ENSMUST00000207080 Gm2448 processed_pseudogene Interval_119963 chr4 141132686 141132874 + 0 NA intron (ENSMUSG00000040842.17, intron 1 of 3) protein_coding-intron (ENSMUSG00000040842.17, intron 1 of 2) 6947 ENSMUSG00000040842.17 ENSMUSG00000040842 ENSMUST00000128444 Szrd1 protein_coding Interval_169902 chr9 102840548 102841297 + 0 NA intron (ENSMUSG00000032547.12, intron 1 of 13) protein_coding-intron (ENSMUSG00000032547.12, intron 1 of 14) -10913 ENSMUSG00000110877.1 ENSMUSG00000110877 ENSMUST00000214076 Gm47427 TEC Interval_116331 chr4 109891041 109891522 + 0 NA intron (ENSMUSG00000010517.7, intron 5 of 5) protein_coding-intron (ENSMUSG00000010517.7, intron 15 of 18) 50496 ENSMUSG00000010517.7 ENSMUSG00000010517 ENSMUST00000155204 Faf1 protein_coding Interval_105667 chr3 88473089 88473408 + 0 NA Intergenic Intergenic -1336 ENSMUSG00000103304.1 ENSMUSG00000103304 ENSMUST00000193850 Gm5979 unprocessed_pseudogene Interval_21444 chr10 128636755 128637256 + 0 NA intron (ENSMUSG00000002578.18, intron 6 of 8) protein_coding-intron (ENSMUSG00000002578.18, intron 5 of 7) -8879 ENSMUSG00000097372.1 ENSMUSG00000097372 ENSMUST00000180875 Gm26876 lincRNA Interval_40494 chr12 105224288 105225374 + 0 NA Intergenic Intergenic -2135 ENSMUSG00000041359.14 ENSMUSG00000041359 ENSMUST00000176952 Tcl1 protein_coding Interval_114167 chr4 65591677 65592020 + 0 NA intron (ENSMUSG00000028373.16, intron 15 of 21) protein_coding-intron (ENSMUSG00000028373.16, intron 16 of 22) -13401 ENSMUSG00000051675.13 ENSMUSG00000051675 ENSMUST00000156922 Trim32 protein_coding Interval_31953 chr11 104072542 104073499 + 0 NA Intergenic Intergenic -59835 ENSMUSG00000018634.10 ENSMUSG00000018634 ENSMUST00000093925 Crhr1 protein_coding Interval_157396 chr8 70110525 70112670 + 0 NA intron (ENSMUSG00000002341.8, intron 6 of 14) protein_coding-intron (ENSMUSG00000002341.8, intron 6 of 14) -9011 ENSMUSG00000099042.1 ENSMUSG00000099042 ENSMUST00000184696 Mir7066 miRNA Interval_25374 chr11 46848117 46848605 + 0 NA Intergenic Intergenic -26052 ENSMUSG00000082818.1 ENSMUSG00000082818 ENSMUST00000122081 Gm12175 processed_pseudogene Interval_157648 chr8 72019372 72020239 + 0 NA Intergenic Intergenic -15440 ENSMUSG00000110546.1 ENSMUSG00000110546 ENSMUST00000211916 Gm45734 processed_pseudogene Interval_83621 chr19 3261663 3261980 + 0 NA intron (ENSMUSG00000024831.14, intron 13 of 13) protein_coding-intron (ENSMUSG00000024831.14, intron 14 of 14) -6754 ENSMUSG00000117886.1 ENSMUSG00000117886 ENSMUST00000237524 Gm2106 processed_pseudogene Interval_168404 chr9 80084306 80085680 + 0 NA intron (ENSMUSG00000034252.14, intron 1 of 1) protein_coding-intron (ENSMUSG00000034252.14, intron 1 of 22) -11237 ENSMUSG00000093779.1 ENSMUSG00000093779 ENSMUST00000175815 Gm20648 processed_pseudogene Interval_91477 chr2 39139897 39140291 + 0 NA intron (ENSMUSG00000035236.17, intron 2 of 17) protein_coding-intron (ENSMUSG00000035236.17, intron 2 of 17) -13870 ENSMUSG00000107833.1 ENSMUSG00000107833 ENSMUST00000204611 Gm18791 processed_pseudogene Interval_24737 chr11 36480835 36481111 + 0 NA intron (ENSMUSG00000049336.16, intron 2 of 28) protein_coding-intron (ENSMUSG00000049336.16, intron 2 of 28) 202932 ENSMUSG00000086375.1 ENSMUSG00000086375 ENSMUST00000123278 Gm12127 antisense Interval_162663 chr9 7633609 7634696 + 0 NA intron (ENSMUSG00000018620.3, intron 1 of 9) protein_coding-intron (ENSMUSG00000018620.3, intron 1 of 9) 5921 ENSMUSG00000018620.3 ENSMUSG00000018620 ENSMUST00000034487 Mmp20 protein_coding Interval_23716 chr11 25259512 25259723 + 0 NA intron (ENSMUSG00000033015.16, intron 1 of 1) lincRNA-intron (ENSMUSG00000033015.16, intron 1 of 1) -20902 ENSMUSG00000077669.1 ENSMUSG00000077669 ENSMUST00000104481 Gm24255 snoRNA Interval_68219 chr16 69208486 69209326 + 0 NA Intergenic Intergenic 209460 ENSMUSG00000116931.1 ENSMUSG00000116931 ENSMUST00000232625 Gm18496 processed_pseudogene Interval_669 chr1 9747665 9748845 + 0 NA promoter-TSS (ENSMUSG00000097893.8) antisense-promoter-TSS (ENSMUSG00000097893.8) 127 ENSMUSG00000045210.8 ENSMUSG00000045210 ENSMUST00000057438 Vcpip1 protein_coding Interval_78933 chr18 22030604 22031345 + 0 NA intron (ENSMUSG00000024306.13, intron 16 of 23) protein_coding-intron (ENSMUSG00000024306.13, intron 15 of 22) 140468 ENSMUSG00000024306.13 ENSMUSG00000024306 ENSMUST00000234661 Ccdc178 protein_coding Interval_934 chr1 13289209 13289454 + 0 NA TTS (ENSMUSG00000102639.1) TEC-TTS (ENSMUSG00000102639.1) 1175 ENSMUSG00000102639.1 ENSMUSG00000102639 ENSMUST00000194484 Gm38223 TEC Interval_72519 chr17 30389833 30390098 + 0 NA intron (ENSMUSG00000062202.14, intron 6 of 6) protein_coding-intron (ENSMUSG00000062202.14, intron 6 of 11) 6068 ENSMUSG00000117962.1 ENSMUSG00000117962 ENSMUST00000235315 Gm6402 processed_pseudogene Interval_39863 chr12 99198634 99199288 + 0 NA intron (ENSMUSG00000033713.12, intron 3 of 3) protein_coding-intron (ENSMUSG00000033713.12, intron 5 of 5) -36153 ENSMUSG00000113210.1 ENSMUSG00000113210 ENSMUST00000223511 4930474N09Rik lincRNA Interval_98152 chr2 148825807 148826741 + 0 NA intron (ENSMUSG00000036924.3, intron 2 of 3) protein_coding-intron (ENSMUSG00000036924.3, intron 2 of 3) 6193 ENSMUSG00000036924.3 ENSMUSG00000036924 ENSMUST00000046589 Cst13 protein_coding Interval_42185 chr13 9667637 9668032 + 0 NA TTS (ENSMUSG00000048264.16) protein_coding-TTS (ENSMUSG00000048264.16) -16459 ENSMUSG00000114138.1 ENSMUSG00000114138 ENSMUST00000222421 Gm36423 antisense Interval_101533 chr3 4170691 4171283 + 0 NA Intergenic Intergenic -40731 ENSMUSG00000091223.2 ENSMUSG00000091223 ENSMUST00000170943 Gm8775 processed_pseudogene Interval_32868 chr11 112571735 112571939 + 0 NA Intergenic Intergenic 139503 ENSMUSG00000041674.16 ENSMUSG00000041674 ENSMUST00000148724 BC006965 processed_transcript Interval_154242 chr8 13689582 13689822 + 0 NA Intergenic Intergenic -12251 ENSMUSG00000031453.16 ENSMUSG00000031453 ENSMUST00000132439 Rasa3 protein_coding Interval_121740 chr5 6222444 6223295 + 0 NA Intergenic Intergenic 91122 ENSMUSG00000105370.1 ENSMUSG00000105370 ENSMUST00000197319 Gm42718 processed_pseudogene Interval_103226 chr3 37181031 37181426 + 0 NA Intergenic Intergenic -1657 ENSMUSG00000084754.1 ENSMUSG00000084754 ENSMUST00000148448 Gm12532 lincRNA Interval_64979 chr16 17650068 17650478 + 0 NA TTS (ENSMUSG00000012114.17) protein_coding-TTS (ENSMUSG00000012114.17) 3573 ENSMUSG00000041617.10 ENSMUSG00000041617 ENSMUST00000183279 Ccdc74a protein_coding Interval_160401 chr8 108961830 108962375 + 0 NA TTS (ENSMUSG00000038872.10) protein_coding-TTS (ENSMUSG00000038872.10) 25242 ENSMUSG00000093241.1 ENSMUSG00000093241 ENSMUST00000175500 Mir3108 miRNA Interval_52476 chr14 46819549 46819779 + 0 NA promoter-TSS (ENSMUSG00000062014.13) protein_coding-promoter-TSS (ENSMUSG00000062014.13) -3525 ENSMUSG00000062014.13 ENSMUSG00000062014 ENSMUST00000226842 Gmfb protein_coding Interval_34119 chr11 120741269 120741516 + 0 NA Intergenic Intergenic -9448 ENSMUSG00000025150.10 ENSMUSG00000025150 ENSMUST00000149450 Cbr2 protein_coding Interval_47806 chr13 93191641 93192867 + 0 NA promoter-TSS (ENSMUSG00000042167.6) protein_coding-promoter-TSS (ENSMUSG00000042167.6) -23825 ENSMUSG00000042167.6 ENSMUSG00000042167 ENSMUST00000224464 Tent2 protein_coding Interval_5195 chr1 86404509 86405658 + 0 NA intron (ENSMUSG00000026237.6, intron 2 of 3) protein_coding-intron (ENSMUSG00000026237.6, intron 2 of 3) -6893 ENSMUSG00000026237.6 ENSMUSG00000026237 ENSMUST00000212614 Nmur1 protein_coding Interval_128293 chr5 112333195 112333778 + 0 NA exon (ENSMUSG00000029345.13, exon 8 of 14) protein_coding-exon (ENSMUSG00000029345.13, exon 8 of 14) 7065 ENSMUSG00000029345.13 ENSMUSG00000029345 ENSMUST00000126736 Tfip11 protein_coding Interval_110194 chr3 154153614 154154279 + 0 NA intron (ENSMUSG00000028360.10, intron 1 of 21) protein_coding-intron (ENSMUSG00000028360.10, intron 1 of 21) 14849 ENSMUSG00000104622.1 ENSMUSG00000104622 ENSMUST00000199871 Gm42541 TEC Interval_35473 chr12 22939424 22939686 + 0 NA Intergenic Intergenic 20751 ENSMUSG00000113670.1 ENSMUSG00000113670 ENSMUST00000222206 Gm49686 transcribed_unprocessed_pseudogene Interval_43800 chr13 36612560 36612962 + 0 NA promoter-TSS (ENSMUSG00000114851.1) sense_intronic-promoter-TSS (ENSMUSG00000114851.1) -211 ENSMUSG00000114851.1 ENSMUSG00000114851 ENSMUST00000226032 Gm46409 sense_intronic Interval_147768 chr7 73454287 73454713 + 0 NA intron (ENSMUSG00000078671.11, intron 30 of 38) protein_coding-intron (ENSMUSG00000078671.11, intron 3 of 5) 6133 ENSMUSG00000108741.1 ENSMUSG00000108741 ENSMUST00000206316 Gm44553 TEC Interval_115809 chr4 104786216 104786527 + 0 NA intron (ENSMUSG00000029656.13, intron 5 of 10) protein_coding-intron (ENSMUSG00000029656.13, intron 5 of 11) -12837 ENSMUSG00000029656.13 ENSMUSG00000029656 ENSMUST00000123892 C8b protein_coding Interval_98521 chr2 152954553 152954994 + 0 NA Intergenic Intergenic -10217 ENSMUSG00000042662.16 ENSMUSG00000042662 ENSMUST00000109811 Dusp15 protein_coding Interval_98042 chr2 147072218 147072516 + 0 NA intron (ENSMUSG00000027433.5, intron 28 of 29) protein_coding-intron (ENSMUSG00000027433.5, intron 28 of 29) 13078 ENSMUSG00000054160.2 ENSMUSG00000054160 ENSMUST00000067020 Nkx2-4 protein_coding Interval_39429 chr12 87347567 87348290 + 0 NA intron (ENSMUSG00000021036.10, intron 4 of 4) protein_coding-intron (ENSMUSG00000021036.10, intron 5 of 11) -19315 ENSMUSG00000021036.10 ENSMUSG00000021036 ENSMUST00000167911 Sptlc2 protein_coding Interval_135111 chr6 35506998 35507751 + 0 NA Intergenic Intergenic 17264 ENSMUSG00000095986.1 ENSMUSG00000095986 ENSMUST00000175136 Gm23053 miRNA Interval_170948 chr9 113112520 113113862 + 0 NA intron (ENSMUSG00000110996.1, intron 1 of 6) lincRNA-intron (ENSMUSG00000110996.1, intron 1 of 6) 9838 ENSMUSG00000110996.1 ENSMUSG00000110996 ENSMUST00000214620 Gm36251 lincRNA Interval_60249 chr15 69104032 69104207 + 0 NA Intergenic Intergenic 130880 ENSMUSG00000115935.1 ENSMUSG00000115935 ENSMUST00000229754 4930573C08Rik TEC Interval_8240 chr1 136674201 136675584 + 0 NA intron (ENSMUSG00000097113.7, intron 2 of 4) lincRNA-intron (ENSMUSG00000097113.7, intron 2 of 4) -8504 ENSMUSG00000097113.7 ENSMUSG00000097113 ENSMUST00000180962 Gm19705 lincRNA Interval_143020 chr6 148456178 148456544 + 0 NA Intergenic Intergenic -14726 ENSMUSG00000030306.14 ENSMUSG00000030306 ENSMUST00000203991 Tmtc1 protein_coding Interval_81974 chr18 66542501 66543156 + 0 NA Intergenic Intergenic -6185 ENSMUSG00000118148.1 ENSMUSG00000118148 ENSMUST00000238141 Gm50158 processed_pseudogene Interval_167114 chr9 65424388 65425675 + 0 NA Intergenic Intergenic -2076 ENSMUSG00000053862.6 ENSMUSG00000053862 ENSMUST00000065894 Slc51b protein_coding Interval_9811 chr1 162589545 162589921 + 0 NA intron (ENSMUSG00000026696.15, intron 6 of 7) protein_coding-intron (ENSMUSG00000026696.15, intron 6 of 7) 18964 ENSMUSG00000026696.15 ENSMUSG00000026696 ENSMUST00000138499 Vamp4 protein_coding Interval_16344 chr10 62367085 62367538 + 0 NA intron (ENSMUSG00000037012.18, intron 1 of 4) protein_coding-intron (ENSMUSG00000037012.18, intron 1 of 21) 26704 ENSMUSG00000085347.1 ENSMUSG00000085347 ENSMUST00000142968 Hk1os antisense Interval_146189 chr7 44597219 44597433 + 0 NA intron (ENSMUSG00000062785.14, intron 2 of 4) protein_coding-intron (ENSMUSG00000062785.14, intron 2 of 3) -1447 ENSMUSG00000108832.1 ENSMUSG00000108832 ENSMUST00000208849 Gm44832 antisense Interval_16553 chr10 63595510 63595841 + 0 NA intron (ENSMUSG00000060843.11, intron 5 of 17) protein_coding-intron (ENSMUSG00000060843.11, intron 4 of 16) -173886 ENSMUSG00000048185.5 ENSMUSG00000048185 ENSMUST00000054760 Gm7075 protein_coding Interval_59710 chr15 58798080 58798638 + 0 NA intron (ENSMUSG00000062373.8, intron 1 of 6) protein_coding-intron (ENSMUSG00000062373.8, intron 1 of 6) -16408 ENSMUSG00000093677.1 ENSMUSG00000093677 ENSMUST00000176387 Gm20712 sense_overlapping Interval_26925 chr11 61602934 61603144 + 0 NA Intergenic Intergenic -23352 ENSMUSG00000001036.17 ENSMUSG00000001036 ENSMUST00000137525 Epn2 protein_coding Interval_155100 chr8 26476790 26477786 + 0 NA intron (ENSMUSG00000109961.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000109961.1, intron 1 of 2) -8448 ENSMUSG00000109961.1 ENSMUSG00000109961 ENSMUST00000209999 Gm31983 lincRNA Interval_105997 chr3 90513071 90515351 + 0 NA promoter-TSS (ENSMUSG00000042312.10) protein_coding-promoter-TSS (ENSMUSG00000042312.10) 67 ENSMUSG00000044080.9 ENSMUSG00000044080 ENSMUST00000107340 S100a1 protein_coding Interval_153618 chr8 3862434 3863464 + 0 NA Intergenic Intergenic -8640 ENSMUSG00000040197.4 ENSMUSG00000040197 ENSMUST00000033888 Cd209e protein_coding Interval_75441 chr17 66558902 66559722 + 0 NA intron (ENSMUSG00000024105.3, intron 3 of 3) protein_coding-intron (ENSMUSG00000024105.3, intron 3 of 3) 27209 ENSMUSG00000117235.1 ENSMUSG00000117235 ENSMUST00000233785 Gm49938 lincRNA Interval_170921 chr9 112174342 112175480 + 0 NA TTS (ENSMUSG00000032503.18) protein_coding-TTS (ENSMUSG00000032503.18) 13015 ENSMUSG00000032503.18 ENSMUSG00000032503 ENSMUST00000162050 Arpp21 protein_coding Interval_73642 chr17 42203800 42204242 + 0 NA Intergenic Intergenic -111968 ENSMUSG00000042256.5 ENSMUSG00000042256 ENSMUST00000232968 Ptchd4 protein_coding Interval_37706 chr12 71274475 71274856 + 0 NA Intergenic Intergenic -4308 ENSMUSG00000113572.1 ENSMUSG00000113572 ENSMUST00000221823 Gm7959 processed_pseudogene Interval_13589 chr10 19994424 19994798 + 0 NA intron (ENSMUSG00000071369.11, intron 1 of 3) protein_coding-intron (ENSMUSG00000071369.11, intron 1 of 29) -86960 ENSMUSG00000020003.16 ENSMUSG00000020003 ENSMUST00000214951 Pex7 protein_coding Interval_11882 chr1 186719647 186720456 + 0 NA TTS (ENSMUSG00000001305.5) protein_coding-TTS (ENSMUSG00000001305.5) -6953 ENSMUSG00000102619.1 ENSMUSG00000102619 ENSMUST00000194722 Gm37849 TEC Interval_108591 chr3 129384701 129384966 + 0 NA Intergenic Intergenic 10723 ENSMUSG00000105278.1 ENSMUSG00000105278 ENSMUST00000195908 Gm42630 TEC Interval_114289 chr4 70871160 70871918 + 0 NA Intergenic Intergenic -201134 ENSMUSG00000083549.1 ENSMUSG00000083549 ENSMUST00000119774 Gm11227 processed_pseudogene Interval_74130 chr17 46680246 46681549 + 0 NA promoter-TSS (ENSMUSG00000002768.8) protein_coding-promoter-TSS (ENSMUSG00000002768.8) -94 ENSMUSG00000063576.12 ENSMUSG00000063576 ENSMUST00000233524 Klhdc3 protein_coding Interval_109100 chr3 135754299 135754469 + 0 NA Intergenic Intergenic -71273 ENSMUSG00000053897.15 ENSMUSG00000053897 ENSMUST00000133810 Slc39a8 protein_coding Interval_7110 chr1 126045271 126045625 + 0 NA intron (ENSMUSG00000049690.15, intron 8 of 14) protein_coding-intron (ENSMUSG00000049690.15, intron 7 of 12) 26013 ENSMUSG00000102723.1 ENSMUSG00000102723 ENSMUST00000194647 Gm37936 TEC Interval_114327 chr4 73111593 73111801 + 0 NA Intergenic Intergenic -2960 ENSMUSG00000089194.1 ENSMUSG00000089194 ENSMUST00000158569 Gm25769 snoRNA Interval_532 chr1 7045023 7045809 + 0 NA Intergenic Intergenic 9501 ENSMUSG00000103629.1 ENSMUSG00000103629 ENSMUST00000195648 Gm5694 processed_pseudogene Interval_76436 chr17 80191049 80191398 + 0 NA Intergenic Intergenic 5181 ENSMUSG00000088453.1 ENSMUSG00000088453 ENSMUST00000157828 Gm25706 misc_RNA Interval_54382 chr14 68116242 68117344 + 0 NA intron (ENSMUSG00000022054.11, intron 2 of 3) protein_coding-intron (ENSMUSG00000022054.11, intron 2 of 3) 2860 ENSMUSG00000114466.1 ENSMUSG00000114466 ENSMUST00000224875 Gm19216 processed_pseudogene Interval_133238 chr5 150781468 150781860 + 0 NA intron (ENSMUSG00000034021.15, intron 23 of 34) protein_coding-intron (ENSMUSG00000034021.15, intron 23 of 34) 29571 ENSMUSG00000107048.1 ENSMUSG00000107048 ENSMUST00000200678 Gm43807 sense_intronic Interval_26954 chr11 61815676 61816188 + 0 NA intron (ENSMUSG00000004798.14, intron 11 of 24) protein_coding-intron (ENSMUSG00000004798.14, intron 13 of 26) -11911 ENSMUSG00000004798.14 ENSMUSG00000004798 ENSMUST00000157049 Ulk2 protein_coding Interval_163365 chr9 21095861 21096366 + 0 NA intron (ENSMUSG00000086016.1, intron 1 of 1) antisense-intron (ENSMUSG00000086016.1, intron 1 of 1) -4105 ENSMUSG00000010205.11 ENSMUSG00000010205 ENSMUST00000115487 Raver1 protein_coding Interval_73058 chr17 34530911 34531171 + 0 NA Intergenic Intergenic -9137 ENSMUSG00000083441.1 ENSMUSG00000083441 ENSMUST00000121408 Gm15329 unprocessed_pseudogene Interval_120256 chr4 144968960 144969893 + 0 NA Intergenic Intergenic -10578 ENSMUSG00000103911.1 ENSMUSG00000103911 ENSMUST00000193467 Gm38074 TEC Interval_138178 chr6 85942461 85943652 + 0 NA exon (ENSMUSG00000030002.15, exon 9 of 9) protein_coding-exon (ENSMUSG00000030002.15, exon 9 of 9) 4617 ENSMUSG00000107203.1 ENSMUSG00000107203 ENSMUST00000201140 Gm7542 processed_pseudogene Interval_120823 chr4 150836390 150837162 + 0 NA intron (ENSMUSG00000085097.1, intron 2 of 2) antisense-intron (ENSMUSG00000078492.3, intron 3 of 3) -10337 ENSMUSG00000084314.1 ENSMUSG00000084314 ENSMUST00000121072 Rps15a-ps3 processed_pseudogene Interval_92087 chr2 53119904 53120119 + 0 NA exon (ENSMUSG00000036053.17, exon 21 of 27) protein_coding-exon (ENSMUSG00000036053.17, exon 21 of 27) 71176 ENSMUSG00000061136.16 ENSMUSG00000061136 ENSMUST00000132031 Prpf40a protein_coding Interval_81341 chr18 58511667 58511978 + 0 NA Intergenic Intergenic -44435 ENSMUSG00000024600.8 ENSMUSG00000024600 ENSMUST00000025500 Slc27a6 protein_coding Interval_94598 chr2 92529064 92529973 + 0 NA TTS (ENSMUSG00000085293.2) lincRNA-TTS (ENSMUSG00000085293.2) 11462 ENSMUSG00000085293.2 ENSMUSG00000085293 ENSMUST00000142249 Gm13817 lincRNA Interval_156963 chr8 62548647 62549148 + 0 NA Intergenic Intergenic -1066 ENSMUSG00000109740.1 ENSMUSG00000109740 ENSMUST00000211203 Gm7561 processed_pseudogene Interval_79857 chr18 35598169 35599297 + 0 NA promoter-TSS (ENSMUSG00000037058.16) protein_coding-promoter-TSS (ENSMUSG00000037058.16) -160 ENSMUSG00000118030.1 ENSMUSG00000118030 ENSMUST00000237282 Gm50163 antisense Interval_123265 chr5 30992877 30993121 + 0 NA Intergenic Intergenic 24337 ENSMUSG00000006642.3 ENSMUSG00000006642 ENSMUST00000006818 Tcf23 protein_coding Interval_109504 chr3 143099038 143099612 + 0 NA Intergenic Intergenic -8623 ENSMUSG00000106052.1 ENSMUSG00000106052 ENSMUST00000197030 Gm43614 lincRNA Interval_131717 chr5 139470937 139471800 + 0 NA exon (ENSMUSG00000053581.13, exon 7 of 7) protein_coding-exon (ENSMUSG00000053581.13, exon 7 of 7) -10841 ENSMUSG00000053553.11 ENSMUSG00000053553 ENSMUST00000197512 3110082I17Rik protein_coding Interval_152606 chr7 135138531 135140043 + 0 NA intron (ENSMUSG00000058325.6, intron 42 of 51) protein_coding-intron (ENSMUSG00000058325.6, intron 42 of 51) -7641 ENSMUSG00000077150.1 ENSMUSG00000077150 ENSMUST00000103962 Gm24581 snoRNA Interval_64153 chr16 8747869 8749164 + 0 NA intron (ENSMUSG00000022710.17, intron 2 of 31) protein_coding-intron (ENSMUSG00000022710.17, intron 2 of 31) 17760 ENSMUSG00000084737.1 ENSMUSG00000084737 ENSMUST00000122788 Gm25805 snRNA Interval_63572 chr15 102115448 102116123 + 0 NA TTS (ENSMUSG00000036966.15) protein_coding-TTS (ENSMUSG00000036966.15) 11360 ENSMUSG00000037003.16 ENSMUSG00000037003 ENSMUST00000229800 Tns2 protein_coding Interval_80659 chr18 45643982 45645030 + 0 NA intron (ENSMUSG00000054477.16, intron 3 of 7) protein_coding-intron (ENSMUSG00000054477.16, intron 6 of 10) -10747 ENSMUSG00000054477.16 ENSMUSG00000054477 ENSMUST00000236405 Kcnn2 protein_coding Interval_7208 chr1 127808789 127810266 + 0 NA Intergenic Intergenic 12956 ENSMUSG00000026349.14 ENSMUSG00000026349 ENSMUST00000153359 Ccnt2 protein_coding Interval_163313 chr9 20798861 20799537 + 0 NA intron (ENSMUSG00000004098.7, intron 18 of 41) protein_coding-intron (ENSMUSG00000004098.7, intron 18 of 66) -7835 ENSMUSG00000087728.1 ENSMUSG00000087728 ENSMUST00000157103 Gm26274 misc_RNA Interval_34955 chr12 15440932 15442416 + 0 NA Intergenic Intergenic -41369 ENSMUSG00000113069.1 ENSMUSG00000113069 ENSMUST00000222638 Gm48541 processed_pseudogene Interval_158890 chr8 87752773 87753900 + 0 NA intron (ENSMUSG00000045333.15, intron 3 of 5) protein_coding-intron (ENSMUSG00000045333.15, intron 4 of 6) 116679 ENSMUSG00000089301.1 ENSMUSG00000089301 ENSMUST00000158676 Gm24841 misc_RNA Interval_130589 chr5 129063055 129063913 + 0 NA Intergenic Intergenic -33273 ENSMUSG00000044017.16 ENSMUSG00000044017 ENSMUST00000156437 Adgrd1 protein_coding Interval_46655 chr13 68198045 68198972 + 0 NA Intergenic Intergenic 17214 ENSMUSG00000113342.1 ENSMUSG00000113342 ENSMUST00000221571 AA414992 TEC Interval_50344 chr14 11947064 11948330 + 0 NA intron (ENSMUSG00000021745.14, intron 2 of 3) protein_coding-intron (ENSMUSG00000021745.14, intron 2 of 29) 33511 ENSMUSG00000085883.2 ENSMUSG00000085883 ENSMUST00000151564 Gm3848 antisense Interval_92563 chr2 60717262 60717969 + 0 NA intron (ENSMUSG00000026971.15, intron 1 of 16) protein_coding-intron (ENSMUSG00000026971.15, intron 1 of 17) -43889 ENSMUSG00000026971.15 ENSMUSG00000026971 ENSMUST00000142696 Itgb6 protein_coding Interval_4799 chr1 78976964 78977249 + 0 NA intron (ENSMUSG00000099706.1, intron 2 of 3) lincRNA-intron (ENSMUSG00000099706.1, intron 2 of 3) -9027 ENSMUSG00000072978.3 ENSMUSG00000072978 ENSMUST00000049117 Gm5830 processed_pseudogene Interval_51198 chr14 24793600 24794564 + 0 NA Intergenic Intergenic -39553 ENSMUSG00000114965.1 ENSMUSG00000114965 ENSMUST00000223735 Gm47906 lincRNA Interval_72792 chr17 32207640 32207890 + 0 NA intron (ENSMUSG00000024002.18, intron 12 of 12) protein_coding-intron (ENSMUSG00000024002.18, intron 12 of 19) -18216 ENSMUSG00000037577.13 ENSMUSG00000037577 ENSMUST00000162117 Ephx3 protein_coding Interval_6632 chr1 118416328 118416606 + 0 NA intron (ENSMUSG00000064302.13, intron 1 of 38) protein_coding-intron (ENSMUSG00000064302.13, intron 1 of 39) 37018 ENSMUSG00000077257.1 ENSMUSG00000077257 ENSMUST00000104069 Gm26080 snoRNA Interval_147216 chr7 64704342 64704685 + 0 NA intron (ENSMUSG00000030519.14, intron 2 of 11) protein_coding-intron (ENSMUSG00000030519.14, intron 4 of 14) -40070 ENSMUSG00000030519.14 ENSMUSG00000030519 ENSMUST00000206630 Apba2 protein_coding Interval_80464 chr18 42393918 42396327 + 0 NA promoter-TSS (ENSMUSG00000024497.4) protein_coding-promoter-TSS (ENSMUSG00000024497.4) 47 ENSMUSG00000024497.4 ENSMUSG00000024497 ENSMUST00000237247 Pou4f3 protein_coding Interval_73639 chr17 42148453 42148775 + 0 NA Intergenic Intergenic -167375 ENSMUSG00000042256.5 ENSMUSG00000042256 ENSMUST00000232968 Ptchd4 protein_coding Interval_67288 chr16 45532809 45533748 + 0 NA exon (ENSMUSG00000089630.1, exon 1 of 1) processed_pseudogene-exon (ENSMUSG00000089630.1, exon 1 of 1) 1211 ENSMUSG00000089630.1 ENSMUSG00000089630 ENSMUST00000160509 Gm6903 processed_pseudogene Interval_30952 chr11 97393342 97394445 + 0 NA exon (ENSMUSG00000038485.6, exon 10 of 10) protein_coding-exon (ENSMUSG00000038485.6, exon 10 of 10) 31458 ENSMUSG00000038485.6 ENSMUSG00000038485 ENSMUST00000149212 Socs7 protein_coding Interval_165622 chr9 50470595 50471746 + 0 NA Intergenic Intergenic -23357 ENSMUSG00000032068.14 ENSMUSG00000032068 ENSMUST00000188047 Plet1 protein_coding Interval_16212 chr10 61457198 61457976 + 0 NA Intergenic Intergenic -4929 ENSMUSG00000020091.15 ENSMUSG00000020091 ENSMUST00000167087 Eif4ebp2 protein_coding Interval_50744 chr14 18838781 18840102 + 0 NA intron (ENSMUSG00000058317.12, intron 3 of 4) protein_coding-intron (ENSMUSG00000058317.12, intron 2 of 4) 8145 ENSMUSG00000083606.3 ENSMUSG00000083606 ENSMUST00000118355 Gm15916 processed_pseudogene Interval_85679 chr19 29641339 29641633 + 0 NA intron (ENSMUSG00000046324.12, intron 1 of 12) protein_coding-intron (ENSMUSG00000046324.12, intron 2 of 13) 4541 ENSMUSG00000046324.12 ENSMUSG00000046324 ENSMUST00000160907 Ermp1 protein_coding Interval_102846 chr3 32118788 32120637 + 0 NA intron (ENSMUSG00000037610.15, intron 3 of 6) protein_coding-intron (ENSMUSG00000037610.15, intron 1 of 4) -36402 ENSMUSG00000037610.15 ENSMUSG00000037610 ENSMUST00000194796 Kcnmb2 protein_coding Interval_113381 chr4 53976011 53976260 + 0 NA Intergenic Intergenic -27922 ENSMUSG00000089552.1 ENSMUSG00000089552 ENSMUST00000158927 Gm24177 snoRNA Interval_46410 chr13 64910203 64911020 + 0 NA Intergenic Intergenic -3361 ENSMUSG00000114179.1 ENSMUSG00000114179 ENSMUST00000221990 Eif1-ps2 processed_pseudogene Interval_12130 chr1 189927796 189928070 + 0 NA Intergenic Intergenic -5680 ENSMUSG00000026603.13 ENSMUSG00000026603 ENSMUST00000144452 Smyd2 protein_coding Interval_56108 chr14 105851023 105852122 + 0 NA Intergenic Intergenic 10929 ENSMUSG00000115796.1 ENSMUSG00000115796 ENSMUST00000226354 Gm48970 lincRNA Interval_75873 chr17 72410322 72410562 + 0 NA intron (ENSMUSG00000055471.7, intron 1 of 3) protein_coding-intron (ENSMUSG00000055471.7, intron 1 of 28) 88976 ENSMUSG00000089487.1 ENSMUSG00000089487 ENSMUST00000158862 Gm24736 snRNA Interval_33597 chr11 117413810 117415288 + 0 NA exon (ENSMUSG00000086588.1, exon 1 of 3) lincRNA-exon (ENSMUSG00000086588.1, exon 1 of 3) 160 ENSMUSG00000086588.1 ENSMUSG00000086588 ENSMUST00000124901 Gm11729 lincRNA Interval_86756 chr19 43646108 43647261 + 0 NA intron (ENSMUSG00000118236.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000118236.1, intron 1 of 2) 934 ENSMUSG00000118236.1 ENSMUSG00000118236 ENSMUST00000237632 Gm34922 lincRNA Interval_143083 chr6 149141232 149142177 + 0 NA promoter-TSS (ENSMUSG00000039958.17) protein_coding-promoter-TSS (ENSMUSG00000039958.17) 191 ENSMUSG00000039958.17 ENSMUSG00000039958 ENSMUST00000111551 Etfbkmt protein_coding Interval_99099 chr2 157186086 157187434 + 0 NA intron (ENSMUSG00000027641.13, intron 11 of 15) protein_coding-intron (ENSMUSG00000027641.13, intron 11 of 21) 17774 ENSMUSG00000027641.13 ENSMUSG00000027641 ENSMUST00000141296 Rbl1 protein_coding Interval_111644 chr4 25091752 25093479 + 0 NA intron (ENSMUSG00000085885.1, intron 2 of 4) processed_transcript-intron (ENSMUSG00000085885.1, intron 2 of 4) -125166 ENSMUSG00000046219.9 ENSMUSG00000046219 ENSMUST00000139588 C230012O17Rik processed_transcript Interval_69077 chr16 90461323 90461889 + 0 NA promoter-TSS (ENSMUSG00000053414.8) protein_coding-promoter-TSS (ENSMUSG00000053414.8) 61062 ENSMUSG00000053414.8 ENSMUSG00000053414 ENSMUST00000231603 Hunk protein_coding Interval_136756 chr6 59130077 59130619 + 0 NA Intergenic Intergenic 31095 ENSMUSG00000096371.1 ENSMUSG00000096371 ENSMUST00000178930 Gm22367 snoRNA Interval_48399 chr13 98778729 98779014 + 0 NA intron (ENSMUSG00000041685.16, intron 6 of 8) protein_coding-intron (ENSMUSG00000041685.16, intron 6 of 25) -22301 ENSMUSG00000114458.1 ENSMUSG00000114458 ENSMUST00000225263 Gm47551 antisense Interval_79983 chr18 36426984 36427191 + 0 NA intron (ENSMUSG00000024346.6, intron 2 of 2) protein_coding-intron (ENSMUSG00000024346.6, intron 3 of 3) 27437 ENSMUSG00000024346.6 ENSMUSG00000024346 ENSMUST00000237499 Pfdn1 protein_coding Interval_14919 chr10 41098374 41098616 + 0 NA intron (ENSMUSG00000111576.1, intron 5 of 7) lincRNA-intron (ENSMUSG00000111576.1, intron 5 of 7) 23127 ENSMUSG00000111576.1 ENSMUSG00000111576 ENSMUST00000213704 Gm32284 lincRNA Interval_136218 chr6 52115585 52116956 + 0 NA Intergenic Intergenic -1972 ENSMUSG00000081979.1 ENSMUSG00000081979 ENSMUST00000121011 Rps8-ps3 processed_pseudogene Interval_46662 chr13 68443793 68444894 + 0 NA Intergenic Intergenic 25489 ENSMUSG00000113382.1 ENSMUSG00000113382 ENSMUST00000221113 Gm48429 unprocessed_pseudogene Interval_136005 chr6 49395101 49396195 + 0 NA promoter-TSS (ENSMUSG00000023403.14) protein_coding-promoter-TSS (ENSMUSG00000023403.14) 13 ENSMUSG00000023403.14 ENSMUSG00000023403 ENSMUST00000167846 Stk31 protein_coding Interval_69164 chr16 91072062 91073879 + 0 NA intron (ENSMUSG00000039851.11, intron 1 of 1) protein_coding-intron (ENSMUSG00000039851.11, intron 1 of 1) 22152 ENSMUSG00000039851.11 ENSMUSG00000039851 ENSMUST00000146047 4932438H23Rik protein_coding Interval_120863 chr4 151132064 151132301 + 0 NA intron (ENSMUSG00000014592.21, intron 10 of 24) protein_coding-intron (ENSMUSG00000014592.21, intron 10 of 23) 42612 ENSMUSG00000078491.2 ENSMUSG00000078491 ENSMUST00000105667 Gm13090 protein_coding Interval_152385 chr7 132655774 132657076 + 0 NA TTS (ENSMUSG00000087348.1) antisense-TTS (ENSMUSG00000087348.1) 3459 ENSMUSG00000087348.1 ENSMUSG00000087348 ENSMUST00000132849 Gm15582 antisense Interval_8116 chr1 135807425 135808298 + 0 NA intron (ENSMUSG00000026418.16, intron 7 of 9) protein_coding-intron (ENSMUSG00000026418.16, intron 3 of 4) -22134 ENSMUSG00000041782.14 ENSMUSG00000041782 ENSMUST00000185756 Lad1 protein_coding Interval_58840 chr15 38508217 38508518 + 0 NA intron (ENSMUSG00000037458.15, intron 2 of 4) protein_coding-intron (ENSMUSG00000037458.15, intron 2 of 11) -10419 ENSMUSG00000115546.1 ENSMUSG00000115546 ENSMUST00000228225 Gm49077 antisense Interval_90447 chr2 30495642 30496600 + 0 NA Intergenic Intergenic -21902 ENSMUSG00000089762.3 ENSMUSG00000089762 ENSMUST00000065134 Ier5l protein_coding Interval_45855 chr13 58566886 58567744 + 0 NA intron (ENSMUSG00000021553.14, intron 11 of 17) protein_coding-intron (ENSMUSG00000021553.14, intron 11 of 17) 21287 ENSMUSG00000114234.1 ENSMUSG00000114234 ENSMUST00000223882 Gm3131 processed_pseudogene Interval_31693 chr11 102284151 102285372 + 0 NA promoter-TSS (ENSMUSG00000034757.15) protein_coding-promoter-TSS (ENSMUSG00000034757.15) -435 ENSMUSG00000034757.15 ENSMUSG00000034757 ENSMUST00000156326 Tmub2 protein_coding Interval_39790 chr12 98346245 98346486 + 0 NA Intergenic Intergenic -66704 ENSMUSG00000112510.1 ENSMUSG00000112510 ENSMUST00000218404 Gm47566 antisense Interval_81983 chr18 66818308 66818588 + 0 NA Intergenic Intergenic 42058 ENSMUSG00000047259.3 ENSMUSG00000047259 ENSMUST00000057942 Mc4r protein_coding Interval_77396 chr17 88431417 88432810 + 0 NA Intergenic Intergenic -8622 ENSMUSG00000034998.18 ENSMUSG00000034998 ENSMUST00000141052 Foxn2 protein_coding Interval_154068 chr8 12452080 12452306 + 0 NA Intergenic Intergenic 14771 ENSMUSG00000109921.1 ENSMUSG00000109921 ENSMUST00000209741 Gm33326 lincRNA Interval_8728 chr1 150132591 150132839 + 0 NA Intergenic Intergenic -13253 ENSMUSG00000101199.1 ENSMUSG00000101199 ENSMUST00000189312 Gm9687 processed_pseudogene Interval_28283 chr11 74876736 74877345 + 0 NA intron (ENSMUSG00000038351.14, intron 2 of 23) protein_coding-intron (ENSMUSG00000038351.14, intron 2 of 22) -7948 ENSMUSG00000038351.14 ENSMUSG00000038351 ENSMUST00000148421 Sgsm2 protein_coding Interval_26903 chr11 61453916 61454457 + 0 NA promoter-TSS (ENSMUSG00000010086.17) protein_coding-promoter-TSS (ENSMUSG00000010086.17) -55 ENSMUSG00000010086.17 ENSMUSG00000010086 ENSMUST00000130648 Rnf112 protein_coding Interval_85313 chr19 24586243 24586667 + 0 NA Intergenic Intergenic 30103 ENSMUSG00000117979.1 ENSMUSG00000117979 ENSMUST00000235982 Gm50341 lincRNA Interval_2647 chr1 42906888 42907830 + 0 NA Intergenic Intergenic 4302 ENSMUSG00000060679.14 ENSMUSG00000060679 ENSMUST00000202358 Mrps9 protein_coding Interval_120064 chr4 141616746 141619093 + 0 NA promoter-TSS (ENSMUSG00000043085.14) protein_coding-promoter-TSS (ENSMUSG00000043085.14) 62 ENSMUSG00000043085.14 ENSMUSG00000043085 ENSMUST00000156246 Tmem82 protein_coding Interval_127063 chr5 100031763 100033490 + 0 NA TTS (ENSMUSG00000029328.15) protein_coding-TTS (ENSMUSG00000029328.15) 6243 ENSMUSG00000029328.15 ENSMUSG00000029328 ENSMUST00000151323 Hnrnpdl protein_coding Interval_112232 chr4 37170009 37170383 + 0 NA Intergenic Intergenic -30322 ENSMUSG00000080969.1 ENSMUSG00000080969 ENSMUST00000121654 Taf9-ps processed_pseudogene Interval_82693 chr18 75989017 75989239 + 0 NA intron (ENSMUSG00000044646.15, intron 2 of 5) protein_coding-intron (ENSMUSG00000044646.15, intron 2 of 4) 26549 ENSMUSG00000118311.1 ENSMUSG00000118311 ENSMUST00000238127 1700003O11Rik antisense Interval_170870 chr9 111391270 111392974 + 0 NA exon (ENSMUSG00000062296.8, exon 20 of 22) protein_coding-exon (ENSMUSG00000062296.8, exon 20 of 22) 17234 ENSMUSG00000062296.8 ENSMUSG00000062296 ENSMUST00000197650 Trank1 protein_coding Interval_121279 chr4 154679397 154679715 + 0 NA Intergenic Intergenic -11689 ENSMUSG00000051276.4 ENSMUSG00000051276 ENSMUST00000060062 Actrt2 protein_coding Interval_62474 chr15 93283281 93283655 + 0 NA TTS (ENSMUSG00000022634.9) protein_coding-TTS (ENSMUSG00000022634.9) -8289 ENSMUSG00000036197.16 ENSMUSG00000036197 ENSMUST00000057896 Gxylt1 protein_coding Interval_103719 chr3 52007468 52008108 + 0 NA intron (ENSMUSG00000061143.15, intron 1 of 4) protein_coding-intron (ENSMUSG00000061143.15, intron 1 of 4) -3763 ENSMUSG00000102423.1 ENSMUSG00000102423 ENSMUST00000192845 Gm37465 TEC Interval_24235 chr11 31692140 31692450 + 0 NA Intergenic Intergenic -6353 ENSMUSG00000103635.1 ENSMUSG00000103635 ENSMUST00000192490 Gm38061 TEC Interval_125284 chr5 65942244 65944014 + 0 NA intron (ENSMUSG00000029205.12, intron 2 of 2) protein_coding-intron (ENSMUSG00000029205.12, intron 1 of 3) -8176 ENSMUSG00000106768.1 ENSMUSG00000106768 ENSMUST00000200913 4930480C01Rik TEC Interval_161939 chr8 123902866 123903083 + 0 NA intron (ENSMUSG00000039509.8, intron 24 of 25) protein_coding-intron (ENSMUSG00000039509.8, intron 24 of 25) 6701 ENSMUSG00000110547.1 ENSMUSG00000110547 ENSMUST00000212751 Gm29773 antisense Interval_82860 chr18 77563427 77564119 + 0 NA exon (ENSMUSG00000025427.15, exon 1 of 1) protein_coding-intron (ENSMUSG00000025427.15, intron 1 of 1) 50333 ENSMUSG00000117855.1 ENSMUSG00000117855 ENSMUST00000236419 Gm50197 processed_pseudogene Interval_51155 chr14 24228100 24229090 + 0 NA intron (ENSMUSG00000021782.14, intron 1 of 31) protein_coding-intron (ENSMUSG00000021782.14, intron 1 of 30) 14796 ENSMUSG00000091079.1 ENSMUSG00000091079 ENSMUST00000163715 Gm17105 sense_intronic Interval_151153 chr7 118850341 118851244 + 0 NA intron (ENSMUSG00000030980.17, intron 1 of 3) protein_coding-intron (ENSMUSG00000030980.17, intron 1 of 3) 4839 ENSMUSG00000030980.17 ENSMUSG00000030980 ENSMUST00000152309 Knop1 protein_coding Interval_88354 chr2 4337928 4338875 + 0 NA intron (ENSMUSG00000026657.17, intron 1 of 16) protein_coding-intron (ENSMUSG00000026657.17, intron 1 of 22) 21922 ENSMUSG00000102494.1 ENSMUSG00000102494 ENSMUST00000194090 Gm36988 sense_intronic Interval_165844 chr9 53768411 53768788 + 0 NA Intergenic Intergenic 22530 ENSMUSG00000111084.1 ENSMUSG00000111084 ENSMUST00000213450 Gm48292 processed_pseudogene Interval_29929 chr11 87811579 87811931 + 0 NA intron (ENSMUSG00000009356.12, intron 9 of 12) protein_coding-intron (ENSMUSG00000009356.12, intron 9 of 12) 5750 ENSMUSG00000009356.12 ENSMUSG00000009356 ENSMUST00000136446 Lpo protein_coding Interval_57663 chr15 14123906 14124722 + 0 NA Intergenic Intergenic -18641 ENSMUSG00000115551.1 ENSMUSG00000115551 ENSMUST00000228924 Gm49115 processed_pseudogene Interval_151672 chr7 125936983 125937186 + 0 NA intron (ENSMUSG00000046182.8, intron 3 of 6) protein_coding-intron (ENSMUSG00000046182.8, intron 3 of 6) 127363 ENSMUSG00000108376.1 ENSMUSG00000108376 ENSMUST00000206586 Gm44874 TEC Interval_144736 chr7 27910984 27911887 + 0 NA TTS (ENSMUSG00000070709.12) protein_coding-TTS (ENSMUSG00000070709.12) -16289 ENSMUSG00000097455.1 ENSMUSG00000097455 ENSMUST00000181644 Gm26891 antisense Interval_23892 chr11 27799790 27800799 + 0 NA Intergenic Intergenic -82818 ENSMUSG00000084064.1 ENSMUSG00000084064 ENSMUST00000112483 Gm12079 processed_pseudogene Interval_90040 chr2 27463876 27464597 + 0 NA promoter-TSS (ENSMUSG00000026918.16) protein_coding-promoter-TSS (ENSMUSG00000026918.16) -120 ENSMUSG00000026918.16 ENSMUSG00000026918 ENSMUST00000126059 Brd3 protein_coding Interval_149628 chr7 100159136 100160479 + 0 NA intron (ENSMUSG00000030725.4, intron 1 of 1) protein_coding-intron (ENSMUSG00000030725.4, intron 1 of 1) 448 ENSMUSG00000030725.4 ENSMUSG00000030725 ENSMUST00000207825 Lipt2 protein_coding Interval_124036 chr5 37697352 37697569 + 0 NA intron (ENSMUSG00000029123.8, intron 1 of 11) protein_coding-intron (ENSMUSG00000029123.8, intron 1 of 11) 19711 ENSMUSG00000029123.8 ENSMUSG00000029123 ENSMUST00000094836 Stk32b protein_coding Interval_31942 chr11 103979494 103980802 + 0 NA intron (ENSMUSG00000062421.13, intron 1 of 2) protein_coding-intron (ENSMUSG00000062421.13, intron 3 of 4) 559 ENSMUSG00000062421.13 ENSMUSG00000062421 ENSMUST00000154089 Arf2 protein_coding Interval_161883 chr8 123422185 123422996 + 0 NA promoter-TSS (ENSMUSG00000001482.15) protein_coding-promoter-TSS (ENSMUSG00000001482.15) -937 ENSMUSG00000001482.15 ENSMUSG00000001482 ENSMUST00000212827 Def8 protein_coding Interval_6219 chr1 102378508 102378867 + 0 NA Intergenic Intergenic 35334 ENSMUSG00000088510.1 ENSMUSG00000088510 ENSMUST00000157885 Gm23036 snoRNA Interval_16594 chr10 64735898 64737664 + 0 NA intron (ENSMUSG00000060843.11, intron 13 of 17) protein_coding-intron (ENSMUSG00000060843.11, intron 12 of 16) 383586 ENSMUSG00000100528.1 ENSMUSG00000100528 ENSMUST00000187710 Gm28881 lincRNA Interval_3955 chr1 65062954 65063568 + 0 NA promoter-TSS (ENSMUSG00000067299.11) protein_coding-promoter-TSS (ENSMUSG00000067299.11) 40 ENSMUSG00000067299.11 ENSMUSG00000067299 ENSMUST00000127762 Crygd protein_coding Interval_69976 chr17 3740653 3741781 + 0 NA Intergenic Intergenic -44956 ENSMUSG00000023802.4 ENSMUSG00000023802 ENSMUST00000115800 Nox3 protein_coding Interval_80282 chr18 38801983 38802817 + 0 NA intron (ENSMUSG00000118193.1, intron 1 of 5) protein_coding-intron (ENSMUSG00000118193.1, intron 1 of 5) -30053 ENSMUSG00000081773.1 ENSMUSG00000081773 ENSMUST00000119217 Gm8302 processed_pseudogene Interval_139735 chr6 108248216 108249720 + 0 NA intron (ENSMUSG00000030102.11, intron 4 of 61) protein_coding-intron (ENSMUSG00000030102.11, intron 4 of 61) -63412 ENSMUSG00000030101.15 ENSMUSG00000030101 ENSMUST00000171697 Sumf1 protein_coding Interval_25145 chr11 44540142 44540950 + 0 NA intron (ENSMUSG00000019189.13, intron 3 of 4) protein_coding-intron (ENSMUSG00000019189.13, intron 3 of 10) -16285 ENSMUSG00000019189.13 ENSMUSG00000019189 ENSMUST00000129676 Rnf145 protein_coding Interval_90511 chr2 30875786 30876508 + 0 NA intron (ENSMUSG00000039476.13, intron 1 of 1) protein_coding-intron (ENSMUSG00000039476.13, intron 1 of 3) 30703 ENSMUSG00000039476.13 ENSMUSG00000039476 ENSMUST00000137924 Prrx2 protein_coding Interval_136981 chr6 65448640 65449320 + 0 NA intron (ENSMUSG00000029917.15, intron 3 of 5) protein_coding-intron (ENSMUSG00000029917.15, intron 2 of 2) 16820 ENSMUSG00000107596.1 ENSMUSG00000107596 ENSMUST00000204311 Gm18913 processed_pseudogene Interval_113893 chr4 59643094 59644052 + 0 NA intron (ENSMUSG00000045071.14, intron 1 of 3) protein_coding-intron (ENSMUSG00000045071.14, intron 1 of 2) 49263 ENSMUSG00000028383.17 ENSMUSG00000028383 ENSMUST00000128792 Hsdl2 protein_coding Interval_146934 chr7 55994939 55995369 + 0 NA promoter-TSS (ENSMUSG00000108640.1) TEC-promoter-TSS (ENSMUSG00000108640.1) 16 ENSMUSG00000108640.1 ENSMUSG00000108640 ENSMUST00000206943 Gm44508 TEC Interval_164276 chr9 34912755 34913438 + 0 NA intron (ENSMUSG00000032036.15, intron 2 of 13) protein_coding-intron (ENSMUSG00000032036.15, intron 3 of 16) 16413 ENSMUSG00000053889.5 ENSMUSG00000053889 ENSMUST00000066604 Kirrel3os antisense Interval_29438 chr11 84022646 84022908 + 0 NA intron (ENSMUSG00000034940.15, intron 1 of 6) protein_coding-intron (ENSMUSG00000034940.15, intron 15 of 21) 3576 ENSMUSG00000034940.15 ENSMUSG00000034940 ENSMUST00000132887 Synrg protein_coding Interval_44369 chr13 44346389 44347092 + 0 NA Intergenic Intergenic 44377 ENSMUSG00000112936.1 ENSMUSG00000112936 ENSMUST00000222879 Gm33958 lincRNA Interval_155212 chr8 27597588 27598784 + 0 NA intron (ENSMUSG00000110333.1, intron 59 of 65) protein_coding-intron (ENSMUSG00000110333.1, intron 61 of 69) -6191 ENSMUSG00000074404.6 ENSMUSG00000074404 ENSMUST00000211230 Gm1698 lincRNA Interval_121424 chr4 155714542 155715684 + 0 NA intron (ENSMUSG00000029038.9, intron 1 of 1) protein_coding-intron (ENSMUSG00000029038.9, intron 1 of 4) 5028 ENSMUSG00000064916.1 ENSMUSG00000064916 ENSMUST00000082982 Gm22573 snRNA Interval_41149 chr12 111504616 111505175 + 0 NA Intergenic Intergenic -5273 ENSMUSG00000113029.1 ENSMUSG00000113029 ENSMUST00000220837 Gm40578 antisense Interval_31312 chr11 99627811 99627994 + 0 NA exon (ENSMUSG00000063251.6, exon 1 of 1) protein_coding-exon (ENSMUSG00000063251.6, exon 1 of 1) 336 ENSMUSG00000063251.6 ENSMUSG00000063251 ENSMUST00000081007 Krtap4-1 protein_coding Interval_111673 chr4 25684965 25685457 + 0 NA intron (ENSMUSG00000055373.8, intron 1 of 1) protein_coding-intron (ENSMUSG00000055373.8, intron 2 of 2) 114644 ENSMUSG00000055373.8 ENSMUSG00000055373 ENSMUST00000149875 Fut9 protein_coding Interval_11435 chr1 181923464 181924056 + 0 NA promoter-TSS (ENSMUSG00000022995.16) protein_coding-promoter-TSS (ENSMUSG00000022995.16) 29615 ENSMUSG00000103722.1 ENSMUSG00000103722 ENSMUST00000194331 2700078F05Rik TEC Interval_40071 chr12 100995869 100997951 + 0 NA intron (ENSMUSG00000113634.1, intron 1 of 1) protein_coding-intron (ENSMUSG00000021182.16, intron 3 of 29) -10077 ENSMUSG00000113634.1 ENSMUSG00000113634 ENSMUST00000223241 Gm36756 antisense Interval_115754 chr4 103359041 103359437 + 0 NA intron (ENSMUSG00000035069.3, intron 3 of 3) protein_coding-intron (ENSMUSG00000035069.3, intron 8 of 8) -23261 ENSMUSG00000086136.1 ENSMUSG00000086136 ENSMUST00000150345 Gm12718 lincRNA Interval_16535 chr10 63421617 63423033 + 0 NA promoter-TSS (ENSMUSG00000048185.5) protein_coding-promoter-TSS (ENSMUSG00000048185.5) -536 ENSMUSG00000048185.5 ENSMUSG00000048185 ENSMUST00000054760 Gm7075 protein_coding Interval_147009 chr7 58077673 58077953 + 0 NA Intergenic Intergenic 70414 ENSMUSG00000077356.1 ENSMUSG00000077356 ENSMUST00000104168 Gm26288 snoRNA Interval_139614 chr6 103102198 103102472 + 0 NA Intergenic Intergenic -65466 ENSMUSG00000107445.1 ENSMUSG00000107445 ENSMUST00000203610 Gm44449 processed_pseudogene Interval_128432 chr5 113286718 113288467 + 0 NA intron (ENSMUSG00000042216.13, intron 3 of 17) protein_coding-intron (ENSMUSG00000042216.13, intron 3 of 24) -8256 ENSMUSG00000042216.13 ENSMUSG00000042216 ENSMUST00000140981 Sgsm1 protein_coding Interval_174166 chrX 137034192 137034816 + 0 NA intron (ENSMUSG00000044348.14, intron 1 of 6) protein_coding-intron (ENSMUSG00000044348.14, intron 1 of 6) -15090 ENSMUSG00000042595.7 ENSMUSG00000042595 ENSMUST00000047852 Fam199x protein_coding Interval_126479 chr5 88830832 88831043 + 0 NA Intergenic Intergenic 8462 ENSMUSG00000082389.2 ENSMUSG00000082389 ENSMUST00000122035 Mkrn1-ps1 processed_pseudogene Interval_171289 chr9 116087533 116089429 + 0 NA TTS (ENSMUSG00000032440.13) protein_coding-TTS (ENSMUSG00000032440.13) -47417 ENSMUSG00000080848.3 ENSMUSG00000080848 ENSMUST00000117563 Gm9385 processed_pseudogene Interval_162667 chr9 7661368 7662161 + 0 NA intron (ENSMUSG00000018620.3, intron 8 of 9) protein_coding-intron (ENSMUSG00000018620.3, intron 8 of 9) 28072 ENSMUSG00000110936.1 ENSMUSG00000110936 ENSMUST00000216642 Gm19212 processed_pseudogene Interval_124723 chr5 53562999 53563457 + 0 NA intron (ENSMUSG00000039191.12, intron 1 of 10) protein_coding-intron (ENSMUSG00000039191.12, intron 1 of 10) -15906 ENSMUSG00000107111.1 ENSMUSG00000107111 ENSMUST00000202154 Gm40304 antisense Interval_161395 chr8 120207543 120208132 + 0 NA intron (ENSMUSG00000097960.1, intron 2 of 2) protein_coding-intron (ENSMUSG00000092329.1, intron 1 of 15) 20393 ENSMUSG00000097960.1 ENSMUSG00000097960 ENSMUST00000183235 A330074K22Rik lincRNA Interval_34563 chr12 5166085 5166727 + 0 NA intron (ENSMUSG00000020627.10, intron 2 of 11) protein_coding-intron (ENSMUSG00000020627.10, intron 3 of 13) 69558 ENSMUSG00000112020.1 ENSMUSG00000112020 ENSMUST00000219031 Gm48532 TEC Interval_8636 chr1 145521748 145521957 + 0 NA Intergenic Intergenic -195161 ENSMUSG00000103055.1 ENSMUSG00000103055 ENSMUST00000194549 Gm38269 TEC Interval_122727 chr5 24914371 24914711 + 0 NA intron (ENSMUSG00000028944.14, intron 2 of 13) protein_coding-intron (ENSMUSG00000028944.14, intron 4 of 15) -6032 ENSMUSG00000028944.14 ENSMUSG00000028944 ENSMUST00000148531 Prkag2 protein_coding Interval_55307 chr14 82043645 82043868 + 0 NA Intergenic Intergenic -77675 ENSMUSG00000115731.1 ENSMUSG00000115731 ENSMUST00000226942 Gm19050 processed_pseudogene Interval_96561 chr2 125722757 125725206 + 0 NA promoter-TSS (ENSMUSG00000035109.14) protein_coding-promoter-TSS (ENSMUSG00000035109.14) 167 ENSMUSG00000035109.14 ENSMUSG00000035109 ENSMUST00000157002 Shc4 protein_coding Interval_59762 chr15 59092186 59093001 + 0 NA Intergenic Intergenic -10588 ENSMUSG00000022353.10 ENSMUSG00000022353 ENSMUST00000227797 Mtss1 protein_coding Interval_148577 chr7 82785111 82786232 + 0 NA Intergenic Intergenic -30027 ENSMUSG00000086690.1 ENSMUSG00000086690 ENSMUST00000144828 4933406J10Rik antisense Interval_110907 chr4 9929536 9929824 + 0 NA Intergenic Intergenic -12283 ENSMUSG00000082843.2 ENSMUSG00000082843 ENSMUST00000120570 4930448K20Rik transcribed_processed_pseudogene Interval_100683 chr2 171493749 171494161 + 0 NA Intergenic Intergenic -187524 ENSMUSG00000088505.1 ENSMUSG00000088505 ENSMUST00000157880 Gm26489 scaRNA Interval_150151 chr7 107409812 107410173 + 0 NA intron (ENSMUSG00000062542.11, intron 1 of 1) protein_coding-intron (ENSMUSG00000062542.11, intron 1 of 6) 43920 ENSMUSG00000109078.1 ENSMUSG00000109078 ENSMUST00000208516 Gm19033 processed_pseudogene Interval_174553 chrX 157597371 157598993 + 0 NA intron (ENSMUSG00000046873.18, intron 1 of 5) protein_coding-intron (ENSMUSG00000046873.18, intron 1 of 10) 468 ENSMUSG00000046873.18 ENSMUSG00000046873 ENSMUST00000152826 Mbtps2 protein_coding Interval_39486 chr12 88376903 88377261 + 0 NA exon (ENSMUSG00000113434.1, exon 1 of 3) antisense-exon (ENSMUSG00000113434.1, exon 1 of 3) 241 ENSMUSG00000113434.1 ENSMUSG00000113434 ENSMUST00000221603 3200001D21Rik antisense Interval_169657 chr9 99807857 99808055 + 0 NA Intergenic Intergenic 50357 ENSMUSG00000110929.1 ENSMUSG00000110929 ENSMUST00000216324 Gm47757 lincRNA Interval_72286 chr17 28982778 28983002 + 0 NA promoter-TSS (ENSMUSG00000024006.17) protein_coding-promoter-TSS (ENSMUSG00000024006.17) 7258 ENSMUSG00000084632.1 ENSMUSG00000084632 ENSMUST00000122683 Gm23887 snRNA Interval_121221 chr4 154147868 154148781 + 0 NA intron (ENSMUSG00000029029.14, intron 3 of 9) protein_coding-intron (ENSMUSG00000029029.14, intron 3 of 11) -3368 ENSMUSG00000029029.14 ENSMUSG00000029029 ENSMUST00000132562 Wrap73 protein_coding Interval_134166 chr6 22297809 22298309 + 0 NA TTS (ENSMUSG00000029671.15) protein_coding-TTS (ENSMUSG00000029671.15) 9198 ENSMUSG00000029671.15 ENSMUSG00000029671 ENSMUST00000176681 Wnt16 protein_coding Interval_163709 chr9 24773820 24774847 + 0 NA promoter-TSS (ENSMUSG00000031965.15) protein_coding-promoter-TSS (ENSMUSG00000031965.15) -49 ENSMUSG00000031965.15 ENSMUSG00000031965 ENSMUST00000216564 Tbx20 protein_coding Interval_123329 chr5 31488586 31489759 + 0 NA TTS (ENSMUSG00000029138.4) protein_coding-TTS (ENSMUSG00000029138.4) -1224 ENSMUSG00000107142.1 ENSMUSG00000107142 ENSMUST00000201177 4930566F21Rik antisense Interval_151992 chr7 127999296 127999736 + 0 NA Intergenic Intergenic -4433 ENSMUSG00000042828.12 ENSMUSG00000042828 ENSMUST00000081042 Trim72 protein_coding Interval_41025 chr12 110677299 110678004 + 0 NA intron (ENSMUSG00000056508.6, intron 1 of 4) protein_coding-intron (ENSMUSG00000056508.6, intron 1 of 5) 3551 ENSMUSG00000098618.1 ENSMUSG00000098618 ENSMUST00000184593 Gm27299 miRNA Interval_140549 chr6 119443962 119444388 + 0 NA intron (ENSMUSG00000030170.14, intron 3 of 4) protein_coding-intron (ENSMUSG00000030170.14, intron 3 of 4) -26700 ENSMUSG00000030168.13 ENSMUSG00000030168 ENSMUST00000189710 Adipor2 protein_coding Interval_156910 chr8 61606823 61607380 + 0 NA intron (ENSMUSG00000058056.16, intron 10 of 21) protein_coding-intron (ENSMUSG00000058056.16, intron 10 of 19) -91201 ENSMUSG00000058056.16 ENSMUSG00000058056 ENSMUST00000123523 Palld protein_coding Interval_41202 chr12 111758035 111759899 + 0 NA promoter-TSS (ENSMUSG00000021288.19) protein_coding-promoter-TSS (ENSMUSG00000021288.19) 118 ENSMUSG00000021288.19 ENSMUSG00000021288 ENSMUST00000147203 Klc1 protein_coding Interval_161698 chr8 122135670 122135908 + 0 NA intron (ENSMUSG00000092329.1, intron 1 of 15) protein_coding-intron (ENSMUSG00000092329.1, intron 1 of 15) -122831 ENSMUSG00000043903.4 ENSMUSG00000043903 ENSMUST00000055537 Zfp469 protein_coding Interval_73966 chr17 45733555 45734243 + 0 NA promoter-TSS (ENSMUSG00000094690.2) protein_coding-promoter-TSS (ENSMUSG00000094690.2) -55 ENSMUSG00000094690.2 ENSMUSG00000094690 ENSMUST00000178179 1600014C23Rik protein_coding Interval_157140 chr8 66283613 66284126 + 0 NA intron (ENSMUSG00000036469.16, intron 2 of 5) protein_coding-intron (ENSMUSG00000036469.16, intron 2 of 5) 103666 ENSMUSG00000086156.1 ENSMUSG00000086156 ENSMUST00000132019 Gm15354 antisense Interval_66826 chr16 37931618 37931843 + 0 NA intron (ENSMUSG00000046961.8, intron 1 of 9) protein_coding-intron (ENSMUSG00000046961.8, intron 1 of 9) 15234 ENSMUSG00000046961.8 ENSMUSG00000046961 ENSMUST00000061274 Gpr156 protein_coding Interval_38191 chr12 76278589 76280087 + 0 NA intron (ENSMUSG00000021048.7, intron 2 of 27) protein_coding-intron (ENSMUSG00000021048.7, intron 2 of 27) -1622 ENSMUSG00000112138.1 ENSMUSG00000112138 ENSMUST00000218456 Gm47526 processed_pseudogene Interval_101408 chr2 181102259 181103175 + 0 NA intron (ENSMUSG00000016346.17, intron 3 of 8) protein_coding-intron (ENSMUSG00000016346.17, intron 8 of 16) 7039 ENSMUSG00000016346.17 ENSMUSG00000016346 ENSMUST00000140789 Kcnq2 protein_coding Interval_24603 chr11 35113471 35113711 + 0 NA Intergenic Intergenic -58038 ENSMUSG00000056427.10 ENSMUSG00000056427 ENSMUST00000124438 Slit3 protein_coding Interval_124107 chr5 38355061 38355270 + 0 NA intron (ENSMUSG00000005107.13, intron 13 of 13) protein_coding-intron (ENSMUSG00000005107.13, intron 10 of 10) 10730 ENSMUSG00000106932.1 ENSMUSG00000106932 ENSMUST00000201983 4930487D11Rik lincRNA Interval_51216 chr14 25108217 25109217 + 0 NA promoter-TSS (ENSMUSG00000114288.1) lincRNA-promoter-TSS (ENSMUSG00000114288.1) -667 ENSMUSG00000114288.1 ENSMUSG00000114288 ENSMUST00000225462 Gm32123 lincRNA Interval_121196 chr4 153963182 153963566 + 0 NA Intergenic Intergenic 6108 ENSMUSG00000047613.10 ENSMUSG00000047613 ENSMUST00000128457 A430005L14Rik protein_coding Interval_163993 chr9 30555267 30556138 + 0 NA Intergenic Intergenic 42762 ENSMUSG00000111438.1 ENSMUSG00000111438 ENSMUST00000214262 Rps2-ps12 processed_pseudogene Interval_154464 chr8 18387803 18388919 + 0 NA Intergenic Intergenic -54023 ENSMUSG00000110056.1 ENSMUSG00000110056 ENSMUST00000211704 1700014L14Rik lincRNA Interval_40264 chr12 102885685 102886403 + 0 NA Intergenic Intergenic -7638 ENSMUSG00000041702.7 ENSMUSG00000041702 ENSMUST00000221914 Btbd7 protein_coding Interval_138339 chr6 87385879 87386470 + 0 NA intron (ENSMUSG00000030048.5, intron 3 of 5) protein_coding-intron (ENSMUSG00000030048.5, intron 3 of 5) 2761 ENSMUSG00000030048.5 ENSMUSG00000030048 ENSMUST00000032127 Gkn3 protein_coding Interval_25944 chr11 52903911 52904245 + 0 NA intron (ENSMUSG00000036264.9, intron 3 of 15) protein_coding-intron (ENSMUSG00000036264.9, intron 3 of 15) 139444 ENSMUSG00000036264.9 ENSMUSG00000036264 ENSMUST00000036796 Fstl4 protein_coding Interval_78613 chr18 15253618 15253989 + 0 NA Intergenic Intergenic -46012 ENSMUSG00000117404.1 ENSMUSG00000117404 ENSMUST00000234417 Gm50035 lincRNA Interval_16911 chr10 69813716 69814786 + 0 NA intron (ENSMUSG00000069601.14, intron 5 of 42) protein_coding-intron (ENSMUSG00000069601.14, intron 1 of 16) -247890 ENSMUSG00000112729.1 ENSMUSG00000112729 ENSMUST00000220152 Gm46231 processed_pseudogene Interval_8203 chr1 136473520 136474245 + 0 NA intron (ENSMUSG00000041498.13, intron 3 of 28) protein_coding-intron (ENSMUSG00000041498.13, intron 4 of 29) 5947 ENSMUSG00000041498.13 ENSMUSG00000041498 ENSMUST00000195274 Kif14 protein_coding Interval_108152 chr3 122018097 122019139 + 0 NA Intergenic Intergenic -5212 ENSMUSG00000104869.1 ENSMUSG00000104869 ENSMUST00000197868 Gm42544 TEC Interval_46683 chr13 68998625 69000029 + 0 NA exon (ENSMUSG00000021536.7, exon 1 of 25) protein_coding-exon (ENSMUSG00000021536.7, exon 1 of 25) 214 ENSMUSG00000021536.7 ENSMUSG00000021536 ENSMUST00000022013 Adcy2 protein_coding Interval_103160 chr3 36095079 36095859 + 0 NA Intergenic Intergenic -1708 ENSMUSG00000105419.1 ENSMUSG00000105419 ENSMUST00000198622 Gm43205 TEC Interval_174856 chrY 872774 873152 + 0 NA promoter-TSS (ENSMUSG00000101666.1) processed_pseudogene-promoter-TSS (ENSMUSG00000101666.1) 346 ENSMUSG00000101107.1 ENSMUSG00000101107 ENSMUST00000187181 Gm28587 lincRNA Interval_83188 chr18 82650494 82650719 + 0 NA promoter-TSS (ENSMUSG00000118160.1) unprocessed_pseudogene-promoter-TSS (ENSMUSG00000118160.1) -447 ENSMUSG00000118160.1 ENSMUSG00000118160 ENSMUST00000237388 Gm50347 unprocessed_pseudogene Interval_13367 chr10 17237726 17237978 + 0 NA Intergenic Intergenic 83759 ENSMUSG00000112478.1 ENSMUSG00000112478 ENSMUST00000219259 Gm47761 lincRNA Interval_164154 chr9 32021647 32022006 + 0 NA Intergenic Intergenic -16366 ENSMUSG00000111771.1 ENSMUSG00000111771 ENSMUST00000216368 Gm47465 lincRNA Interval_22708 chr11 13614675 13616565 + 0 NA Intergenic Intergenic -546459 ENSMUSG00000081631.1 ENSMUSG00000081631 ENSMUST00000121451 Gm12005 processed_pseudogene Interval_142791 chr6 145726699 145728003 + 0 NA Intergenic Intergenic 18922 ENSMUSG00000085658.1 ENSMUSG00000085658 ENSMUST00000144757 Gm15704 lincRNA Interval_8745 chr1 150368057 150368409 + 0 NA intron (ENSMUSG00000006010.14, intron 12 of 13) protein_coding-intron (ENSMUSG00000006010.14, intron 11 of 12) -21462 ENSMUSG00000099447.1 ENSMUSG00000099447 ENSMUST00000186460 2310030A07Rik antisense Interval_89231 chr2 18215005 18215279 + 0 NA exon (ENSMUSG00000026740.12, exon 12 of 12) protein_coding-exon (ENSMUSG00000026740.12, exon 12 of 12) 1760 ENSMUSG00000026740.12 ENSMUSG00000026740 ENSMUST00000165793 Dnajc1 protein_coding Interval_21274 chr10 127590268 127591909 + 0 NA intron (ENSMUSG00000040249.15, intron 11 of 14) protein_coding-intron (ENSMUSG00000040249.15, intron 11 of 88) -5460 ENSMUSG00000086499.1 ENSMUSG00000086499 ENSMUST00000124182 Gm16217 antisense Interval_16587 chr10 64623036 64623699 + 0 NA intron (ENSMUSG00000060843.11, intron 12 of 17) protein_coding-intron (ENSMUSG00000060843.11, intron 11 of 16) -318623 ENSMUSG00000089003.1 ENSMUSG00000089003 ENSMUST00000158378 Gm23854 snRNA Interval_13069 chr10 11064978 11065359 + 0 NA intron (ENSMUSG00000019828.13, intron 2 of 9) protein_coding-intron (ENSMUSG00000019828.13, intron 2 of 8) 17082 ENSMUSG00000019828.13 ENSMUSG00000019828 ENSMUST00000156826 Grm1 protein_coding Interval_168691 chr9 85965198 85965639 + 0 NA Intergenic Intergenic -22218 ENSMUSG00000110946.1 ENSMUSG00000110946 ENSMUST00000213921 Gm47604 lincRNA Interval_46787 chr13 70486000 70486314 + 0 NA Intergenic Intergenic -63376 ENSMUSG00000114054.1 ENSMUSG00000114054 ENSMUST00000220989 Gm47706 processed_pseudogene Interval_74329 chr17 49006978 49007249 + 0 NA intron (ENSMUSG00000040490.4, intron 1 of 2) protein_coding-intron (ENSMUSG00000040490.4, intron 1 of 2) 74734 ENSMUSG00000040490.4 ENSMUSG00000040490 ENSMUST00000046254 Lrfn2 protein_coding Interval_74297 chr17 48636254 48636723 + 0 NA Intergenic Intergenic 18665 ENSMUSG00000077708.1 ENSMUSG00000077708 ENSMUST00000104520 Gm24071 snoRNA Interval_4209 chr1 71628092 71628415 + 0 NA intron (ENSMUSG00000026193.15, intron 16 of 43) protein_coding-intron (ENSMUSG00000026193.15, intron 16 of 45) -24635 ENSMUSG00000073652.10 ENSMUSG00000073652 ENSMUST00000125934 Apol7d antisense Interval_57610 chr15 12811177 12811625 + 0 NA intron (ENSMUSG00000022195.7, intron 7 of 7) protein_coding-intron (ENSMUSG00000022195.7, intron 8 of 8) -6228 ENSMUSG00000115024.1 ENSMUSG00000115024 ENSMUST00000228527 Gm49277 processed_pseudogene Interval_6895 chr1 120466791 120467271 + 0 NA Intergenic Intergenic 31226 ENSMUSG00000101275.1 ENSMUSG00000101275 ENSMUST00000186237 1700012E03Rik lincRNA Interval_44448 chr13 44885699 44886417 + 0 NA intron (ENSMUSG00000038518.15, intron 5 of 15) protein_coding-intron (ENSMUSG00000038518.15, intron 6 of 18) -47775 ENSMUSG00000088189.1 ENSMUSG00000088189 ENSMUST00000157564 Gm22213 snoRNA Interval_27229 chr11 64448055 64448776 + 0 NA intron (ENSMUSG00000047759.6, intron 1 of 1) protein_coding-intron (ENSMUSG00000047759.6, intron 1 of 1) 13083 ENSMUSG00000047759.6 ENSMUSG00000047759 ENSMUST00000058652 Hs3st3a1 protein_coding Interval_9744 chr1 161695436 161696342 + 0 NA Intergenic Intergenic -17816 ENSMUSG00000102860.1 ENSMUSG00000102860 ENSMUST00000194337 Gm37638 TEC Interval_24518 chr11 33944030 33944991 + 0 NA intron (ENSMUSG00000053519.17, intron 1 of 7) protein_coding-intron (ENSMUSG00000053519.17, intron 1 of 3) -18503 ENSMUSG00000020155.2 ENSMUSG00000020155 ENSMUST00000020362 Kcnmb1 protein_coding Interval_159781 chr8 103051239 103051499 + 0 NA Intergenic Intergenic 93577 ENSMUSG00000109848.1 ENSMUSG00000109848 ENSMUST00000211563 Gm45391 lincRNA Interval_89122 chr2 16867095 16867336 + 0 NA Intergenic Intergenic 92803 ENSMUSG00000076950.1 ENSMUSG00000076950 ENSMUST00000103762 Gm24933 miRNA Interval_66341 chr16 33246327 33247411 + 0 NA Intergenic Intergenic -4573 ENSMUSG00000022808.5 ENSMUSG00000022808 ENSMUST00000231242 Snx4 protein_coding Interval_44519 chr13 45613485 45613780 + 0 NA intron (ENSMUSG00000046876.16, intron 5 of 6) protein_coding-intron (ENSMUSG00000046876.16, intron 6 of 7) 67479 ENSMUSG00000000253.13 ENSMUSG00000000253 ENSMUST00000222227 Gmpr protein_coding Interval_147793 chr7 73576598 73576813 + 0 NA Intergenic Intergenic -18558 ENSMUSG00000101970.8 ENSMUSG00000101970 ENSMUST00000184655 1810026B05Rik processed_transcript Interval_37697 chr12 71169686 71171096 + 0 NA intron (ENSMUSG00000034601.17, intron 15 of 29) protein_coding-intron (ENSMUSG00000034601.17, intron 15 of 27) 33543 ENSMUSG00000034601.17 ENSMUSG00000034601 ENSMUST00000134748 2700049A03Rik protein_coding Interval_48420 chr13 98908979 98910076 + 0 NA intron (ENSMUSG00000009470.17, intron 1 of 6) protein_coding-intron (ENSMUSG00000009470.17, intron 1 of 23) 5303 ENSMUSG00000062461.7 ENSMUSG00000062461 ENSMUST00000080866 Rpl27a-ps4 processed_pseudogene Interval_11903 chr1 186929037 186929815 + 0 NA TTS (ENSMUSG00000103503.1) lincRNA-TTS (ENSMUSG00000103503.1) 2464 ENSMUSG00000103503.1 ENSMUSG00000103503 ENSMUST00000194671 1700023G09Rik lincRNA Interval_45606 chr13 56208138 56209534 + 0 NA Intergenic Intergenic -5899 ENSMUSG00000114341.1 ENSMUSG00000114341 ENSMUST00000225940 Gm47104 processed_pseudogene Interval_7937 chr1 134653794 134654315 + 0 NA intron (ENSMUSG00000026452.15, intron 1 of 2) protein_coding-intron (ENSMUSG00000026452.15, intron 1 of 2) 7373 ENSMUSG00000026452.15 ENSMUSG00000026452 ENSMUST00000187702 Syt2 protein_coding Interval_13683 chr10 20992631 20995477 + 0 NA intron (ENSMUSG00000019986.17, intron 14 of 23) protein_coding-intron (ENSMUSG00000019986.17, intron 15 of 23) 39739 ENSMUSG00000111006.1 ENSMUSG00000111006 ENSMUST00000215366 Gm10826 TEC Interval_155480 chr8 33844622 33845015 + 0 NA promoter-TSS (ENSMUSG00000031586.17) protein_coding-promoter-TSS (ENSMUSG00000031586.17) 31615 ENSMUSG00000097442.1 ENSMUSG00000097442 ENSMUST00000181120 Gm26632 antisense Interval_161896 chr8 123518493 123519423 + 0 NA promoter-TSS (ENSMUSG00000040220.10) protein_coding-promoter-TSS (ENSMUSG00000040220.10) 102 ENSMUSG00000040220.10 ENSMUSG00000040220 ENSMUST00000212809 Gas8 protein_coding Interval_130648 chr5 129454904 129455715 + 0 NA Intergenic Intergenic 45692 ENSMUSG00000104873.1 ENSMUSG00000104873 ENSMUST00000199847 Gm40332 TEC Interval_58897 chr15 39816264 39817586 + 0 NA intron (ENSMUSG00000022304.13, intron 7 of 9) protein_coding-intron (ENSMUSG00000022304.13, intron 7 of 9) 19880 ENSMUSG00000087695.1 ENSMUSG00000087695 ENSMUST00000147378 Gm16291 antisense Interval_30981 chr11 97568668 97569456 + 0 NA intron (ENSMUSG00000038453.17, intron 1 of 1) protein_coding-intron (ENSMUSG00000038453.17, intron 1 of 17) 6164 ENSMUSG00000038453.17 ENSMUSG00000038453 ENSMUST00000145845 Srcin1 protein_coding Interval_31786 chr11 102851655 102852486 + 0 NA intron (ENSMUSG00000020929.14, intron 12 of 26) protein_coding-intron (ENSMUSG00000020929.14, intron 13 of 27) 13899 ENSMUSG00000020929.14 ENSMUSG00000020929 ENSMUST00000148209 Eftud2 protein_coding Interval_151749 chr7 126402949 126404150 + 0 NA Intergenic Intergenic 7691 ENSMUSG00000108420.1 ENSMUSG00000108420 ENSMUST00000206502 Gm45141 TEC Interval_123408 chr5 32321875 32322774 + 0 NA TTS (ENSMUSG00000029134.14) protein_coding-TTS (ENSMUSG00000029134.14) -10205 ENSMUSG00000081200.1 ENSMUSG00000081200 ENSMUST00000118876 Gm15615 processed_pseudogene Interval_109771 chr3 146796467 146797461 + 0 NA intron (ENSMUSG00000005034.15, intron 1 of 9) protein_coding-intron (ENSMUSG00000005034.15, intron 1 of 9) -6199 ENSMUSG00000104946.1 ENSMUSG00000104946 ENSMUST00000198392 Gm19104 processed_pseudogene Interval_111325 chr4 18807946 18808121 + 0 NA intron (ENSMUSG00000087402.1, intron 4 of 10) processed_transcript-intron (ENSMUSG00000087402.1, intron 4 of 10) 37646 ENSMUSG00000050550.7 ENSMUSG00000050550 ENSMUST00000121594 Gm11868 processed_pseudogene Interval_22656 chr11 12579173 12579360 + 0 NA Intergenic Intergenic -97667 ENSMUSG00000089034.1 ENSMUSG00000089034 ENSMUST00000158409 Gm22156 snoRNA Interval_134954 chr6 34098360 34098679 + 0 NA intron (ENSMUSG00000056215.13, intron 15 of 19) protein_coding-intron (ENSMUSG00000056215.13, intron 15 of 19) -53410 ENSMUSG00000087356.1 ENSMUSG00000087356 ENSMUST00000126498 Gm13856 antisense Interval_118327 chr4 130314673 130315005 + 0 NA TTS (ENSMUSG00000028772.19) protein_coding-TTS (ENSMUSG00000028772.19) -6166 ENSMUSG00000073752.2 ENSMUSG00000073752 ENSMUST00000097865 Gm10570 antisense Interval_45941 chr13 59503471 59503856 + 0 NA intron (ENSMUSG00000021557.15, intron 13 of 17) protein_coding-intron (ENSMUSG00000021557.15, intron 13 of 25) -38375 ENSMUSG00000021557.15 ENSMUSG00000021557 ENSMUST00000163284 Agtpbp1 protein_coding Interval_4363 chr1 73109881 73110558 + 0 NA Intergenic Intergenic 94183 ENSMUSG00000101968.6 ENSMUSG00000101968 ENSMUST00000190525 1700027A15Rik antisense Interval_321 chr1 3953455 3954379 + 0 NA intron (ENSMUSG00000102343.1, intron 2 of 2) lincRNA-intron (ENSMUSG00000102343.1, intron 2 of 2) 32298 ENSMUSG00000102343.1 ENSMUSG00000102343 ENSMUST00000192427 Gm37381 lincRNA Interval_98039 chr2 147058681 147059108 + 0 NA intron (ENSMUSG00000027433.5, intron 24 of 29) protein_coding-intron (ENSMUSG00000027433.5, intron 24 of 29) 26551 ENSMUSG00000054160.2 ENSMUSG00000054160 ENSMUST00000067020 Nkx2-4 protein_coding Interval_138721 chr6 91409332 91412162 + 0 NA promoter-TSS (ENSMUSG00000108804.1) TEC-promoter-TSS (ENSMUSG00000108804.1) -766 ENSMUSG00000108804.1 ENSMUSG00000108804 ENSMUST00000206086 Gm30437 TEC Interval_36700 chr12 52246920 52247288 + 0 NA intron (ENSMUSG00000035142.18, intron 5 of 5) protein_coding-intron (ENSMUSG00000035142.18, intron 6 of 10) 71017 ENSMUSG00000035142.18 ENSMUSG00000035142 ENSMUST00000162111 Nubpl protein_coding Interval_67354 chr16 47304687 47305726 + 0 NA Intergenic Intergenic 92836 ENSMUSG00000116928.1 ENSMUSG00000116928 ENSMUST00000232587 Gm18169 processed_pseudogene Interval_40913 chr12 109840401 109840771 + 0 NA Intergenic Intergenic 13583 ENSMUSG00000113711.1 ENSMUSG00000113711 ENSMUST00000221611 Gm9661 processed_pseudogene Interval_160946 chr8 115965924 115966147 + 0 NA Intergenic Intergenic 6036 ENSMUSG00000110620.1 ENSMUSG00000110620 ENSMUST00000212988 Gm45733 lincRNA Interval_77754 chr18 3178157 3179668 + 0 NA Intergenic Intergenic -6980 ENSMUSG00000117464.1 ENSMUSG00000117464 ENSMUST00000234747 Gm50075 processed_pseudogene Interval_111138 chr4 12934214 12934715 + 0 NA intron (ENSMUSG00000055963.12, intron 1 of 2) protein_coding-intron (ENSMUSG00000055963.12, intron 2 of 4) 27606 ENSMUSG00000055963.12 ENSMUSG00000055963 ENSMUST00000156536 Triqk protein_coding Interval_61432 chr15 81576753 81578189 + 0 NA Intergenic Intergenic 7557 ENSMUSG00000103520.1 ENSMUSG00000103520 ENSMUST00000192082 1110025M09Rik TEC Interval_112061 chr4 33845580 33846363 + 0 NA Intergenic Intergenic -78622 ENSMUSG00000044288.6 ENSMUSG00000044288 ENSMUST00000084736 Cnr1 protein_coding Interval_41374 chr12 113148580 113148862 + 0 NA promoter-TSS (ENSMUSG00000006360.11) protein_coding-promoter-TSS (ENSMUSG00000006360.11) -3332 ENSMUSG00000006360.11 ENSMUSG00000006360 ENSMUST00000198909 Crip1 protein_coding Interval_138172 chr6 85885475 85885852 + 0 NA Intergenic Intergenic -3663 ENSMUSG00000106784.1 ENSMUSG00000106784 ENSMUST00000200837 Gm43309 processed_pseudogene Interval_50713 chr14 18474389 18474679 + 0 NA Intergenic Intergenic 28659 ENSMUSG00000065858.1 ENSMUSG00000065858 ENSMUST00000083924 Gm22350 snRNA Interval_122760 chr5 25184532 25184875 + 0 NA intron (ENSMUSG00000028938.9, intron 1 of 8) protein_coding-intron (ENSMUSG00000028938.9, intron 1 of 8) 3201 ENSMUSG00000028938.9 ENSMUSG00000028938 ENSMUST00000114965 Galntl5 protein_coding Interval_6585 chr1 117650055 117650877 + 0 NA Intergenic Intergenic -11825 ENSMUSG00000099615.1 ENSMUSG00000099615 ENSMUST00000189430 Gm28362 unprocessed_pseudogene Interval_44026 chr13 39938089 39939691 + 0 NA Intergenic Intergenic -54509 ENSMUSG00000114957.1 ENSMUSG00000114957 ENSMUST00000224937 Gm47316 lincRNA Interval_31112 chr11 98215255 98215570 + 0 NA intron (ENSMUSG00000003119.14, intron 2 of 13) protein_coding-intron (ENSMUSG00000003119.14, intron 2 of 12) -23206 ENSMUSG00000098827.1 ENSMUSG00000098827 ENSMUST00000184250 Gm27399 miRNA Interval_160184 chr8 106995669 106996166 + 0 NA intron (ENSMUSG00000041308.6, intron 3 of 6) protein_coding-intron (ENSMUSG00000041308.6, intron 3 of 5) 13694 ENSMUSG00000088969.1 ENSMUSG00000088969 ENSMUST00000158344 Gm22085 snRNA Interval_86473 chr19 40866711 40868127 + 0 NA promoter-TSS (ENSMUSG00000097740.2) lincRNA-promoter-TSS (ENSMUSG00000097740.2) -897 ENSMUSG00000097740.2 ENSMUSG00000097740 ENSMUST00000181195 E030044B06Rik lincRNA Interval_75751 chr17 71010287 71011605 + 0 NA intron (ENSMUSG00000024049.15, intron 3 of 7) protein_coding-intron (ENSMUSG00000024049.15, intron 2 of 2) 8313 ENSMUSG00000024049.15 ENSMUSG00000024049 ENSMUST00000233790 Myom1 protein_coding Interval_30011 chr11 88677176 88678228 + 0 NA intron (ENSMUSG00000069769.13, intron 5 of 5) protein_coding-intron (ENSMUSG00000069769.13, intron 5 of 13) -40943 ENSMUSG00000087574.1 ENSMUSG00000087574 ENSMUST00000125967 C030037D09Rik lincRNA Interval_28262 chr11 74763429 74765379 + 0 NA Intergenic Intergenic -32034 ENSMUSG00000081252.1 ENSMUSG00000081252 ENSMUST00000118534 Gm16032 processed_pseudogene Interval_128785 chr5 115246151 115247088 + 0 NA promoter-TSS (ENSMUSG00000041740.16) protein_coding-promoter-TSS (ENSMUSG00000041740.16) 8640 ENSMUSG00000060152.14 ENSMUSG00000060152 ENSMUST00000140083 Pop5 protein_coding Interval_115944 chr4 106463279 106465180 + 0 NA promoter-TSS (ENSMUSG00000044254.6) protein_coding-promoter-TSS (ENSMUSG00000044254.6) 100 ENSMUSG00000044254.6 ENSMUSG00000044254 ENSMUST00000049507 Pcsk9 protein_coding Interval_36769 chr12 53466772 53468505 + 0 NA intron (ENSMUSG00000021010.9, intron 2 of 11) protein_coding-intron (ENSMUSG00000021010.9, intron 2 of 11) -157792 ENSMUSG00000113179.1 ENSMUSG00000113179 ENSMUST00000221214 1700030L22Rik antisense Interval_156304 chr8 47242550 47243155 + 0 NA promoter-TSS (ENSMUSG00000038143.16) protein_coding-promoter-TSS (ENSMUSG00000038143.16) -15686 ENSMUSG00000109606.1 ENSMUSG00000109606 ENSMUST00000211539 Gm45537 TEC Interval_102839 chr3 32002990 32003618 + 0 NA intron (ENSMUSG00000037610.15, intron 2 of 6) protein_coding-intron (ENSMUSG00000037610.15, intron 1 of 4) 48540 ENSMUSG00000103539.1 ENSMUSG00000103539 ENSMUST00000194517 Gm37834 TEC Interval_73911 chr17 45447193 45447977 + 0 NA intron (ENSMUSG00000023935.10, intron 6 of 6) protein_coding-intron (ENSMUSG00000023935.10, intron 5 of 5) 13754 ENSMUSG00000097119.2 ENSMUSG00000097119 ENSMUST00000233673 B230354K17Rik bidirectional_promoter_lncRNA Interval_119829 chr4 140248508 140249659 + 0 NA Intergenic Intergenic -2299 ENSMUSG00000040972.8 ENSMUSG00000040972 ENSMUST00000039331 Igsf21 protein_coding Interval_136960 chr6 65091381 65093608 + 0 NA intron (ENSMUSG00000029920.9, intron 9 of 21) protein_coding-intron (ENSMUSG00000029920.9, intron 11 of 23) 30433 ENSMUSG00000029919.5 ENSMUSG00000029919 ENSMUST00000170252 Hpgds protein_coding Interval_132426 chr5 144861300 144862125 + 0 NA Intergenic Intergenic 35104 ENSMUSG00000098822.1 ENSMUSG00000098822 ENSMUST00000183852 Mir7039 miRNA Interval_119006 chr4 134962903 134963631 + 0 NA Intergenic Intergenic 32365 ENSMUSG00000028821.8 ENSMUSG00000028821 ENSMUST00000144037 Syf2 protein_coding Interval_23113 chr11 20003798 20003999 + 0 NA intron (ENSMUSG00000045671.17, intron 3 of 5) protein_coding-intron (ENSMUSG00000045671.17, intron 2 of 5) 49328 ENSMUSG00000045671.17 ENSMUSG00000045671 ENSMUST00000123036 Spred2 protein_coding Interval_161802 chr8 122890343 122892021 + 0 NA exon (ENSMUSG00000035569.17, exon 9 of 13) protein_coding-exon (ENSMUSG00000035569.17, exon 9 of 13) 20633 ENSMUSG00000110440.1 ENSMUSG00000110440 ENSMUST00000212728 Gm45894 antisense Interval_106951 chr3 102152092 102153299 + 0 NA TTS (ENSMUSG00000027860.15) protein_coding-TTS (ENSMUSG00000027860.15) 18080 ENSMUSG00000106296.1 ENSMUSG00000106296 ENSMUST00000197326 4632404M16Rik sense_intronic Interval_139495 chr6 100539861 100540104 + 0 NA Intergenic Intergenic 12582 ENSMUSG00000101553.1 ENSMUSG00000101553 ENSMUST00000187986 1700049E22Rik lincRNA Interval_63943 chr16 4689146 4689965 + 0 NA intron (ENSMUSG00000004069.17, intron 2 of 10) protein_coding-intron (ENSMUSG00000004069.17, intron 2 of 11) 5440 ENSMUSG00000004069.17 ENSMUSG00000004069 ENSMUST00000229529 Dnaja3 protein_coding Interval_138891 chr6 93009883 93010080 + 0 NA intron (ENSMUSG00000097462.7, intron 2 of 3) antisense-intron (ENSMUSG00000097462.7, intron 1 of 9) -69127 ENSMUSG00000108286.1 ENSMUSG00000108286 ENSMUST00000204131 Gm44224 TEC Interval_70335 chr17 8597765 8598242 + 0 NA intron (ENSMUSG00000023868.17, intron 1 of 3) protein_coding-intron (ENSMUSG00000023868.17, intron 1 of 21) -29143 ENSMUSG00000084390.1 ENSMUSG00000084390 ENSMUST00000119013 Gm15425 processed_pseudogene Interval_135348 chr6 38544236 38544588 + 0 NA exon (ENSMUSG00000081670.1, exon 1 of 4) unprocessed_pseudogene-exon (ENSMUSG00000081670.1, exon 1 of 4) 1662 ENSMUSG00000081670.1 ENSMUSG00000081670 ENSMUST00000121946 Gm15697 unprocessed_pseudogene Interval_113225 chr4 50527829 50528517 + 0 NA Intergenic Intergenic 241427 ENSMUSG00000095394.1 ENSMUSG00000095394 ENSMUST00000104120 Gm25485 snoRNA Interval_42223 chr13 10141836 10142029 + 0 NA intron (ENSMUSG00000046159.16, intron 2 of 2) protein_coding-intron (ENSMUSG00000046159.16, intron 2 of 4) 23842 ENSMUSG00000113695.1 ENSMUSG00000113695 ENSMUST00000221530 9330159N22Rik TEC Interval_139828 chr6 109443651 109443872 + 0 NA exon (ENSMUSG00000107551.1, exon 1 of 1) processed_pseudogene-exon (ENSMUSG00000107551.1, exon 1 of 1) 464 ENSMUSG00000107551.1 ENSMUSG00000107551 ENSMUST00000203148 Gm4605 processed_pseudogene Interval_139295 chr6 98003215 98003626 + 0 NA intron (ENSMUSG00000035158.15, intron 4 of 8) protein_coding-intron (ENSMUSG00000035158.15, intron 4 of 8) 11499 ENSMUSG00000035158.15 ENSMUSG00000035158 ENSMUST00000203938 Mitf protein_coding Interval_19451 chr10 99443946 99445477 + 0 NA exon (ENSMUSG00000090665.2, exon 1 of 1) processed_pseudogene-exon (ENSMUSG00000090665.2, exon 1 of 1) 667 ENSMUSG00000090665.2 ENSMUSG00000090665 ENSMUST00000167243 Gad1-ps processed_pseudogene Interval_166228 chr9 57629066 57629677 + 0 NA promoter-TSS (ENSMUSG00000032312.7) protein_coding-promoter-TSS (ENSMUSG00000032312.7) 4696 ENSMUSG00000032312.7 ENSMUSG00000032312 ENSMUST00000213943 Csk protein_coding Interval_91812 chr2 49811279 49812340 + 0 NA intron (ENSMUSG00000085357.1, intron 1 of 2) protein_coding-intron (ENSMUSG00000026765.12, intron 1 of 9) 1139 ENSMUSG00000085357.1 ENSMUSG00000085357 ENSMUST00000125095 Gm13480 lincRNA Interval_117359 chr4 123223460 123223695 + 0 NA Intergenic Intergenic -10276 ENSMUSG00000032744.4 ENSMUSG00000032744 ENSMUST00000127172 Heyl protein_coding Interval_87867 chr19 56687443 56688577 + 0 NA Intergenic Intergenic 15391 ENSMUSG00000117859.1 ENSMUSG00000117859 ENSMUST00000237417 Gm32492 processed_transcript Interval_10177 chr1 166424283 166424997 + 0 NA Intergenic Intergenic 7235 ENSMUSG00000084093.1 ENSMUSG00000084093 ENSMUST00000118577 Gm16418 processed_pseudogene Interval_138890 chr6 93005461 93006269 + 0 NA intron (ENSMUSG00000097462.7, intron 2 of 3) antisense-intron (ENSMUSG00000097462.7, intron 1 of 9) 65287 ENSMUSG00000097462.7 ENSMUSG00000097462 ENSMUST00000204609 9530026P05Rik antisense Interval_25 GL456211.1 119668 120195 + 0 NA NA NA NA NA Interval_54221 chr14 66478490 66478793 + 0 NA Intergenic Intergenic 113054 ENSMUSG00000088737.1 ENSMUSG00000088737 ENSMUST00000158112 Gm23899 rRNA Interval_165475 chr9 48533133 48534020 + 0 NA Intergenic Intergenic -26516 ENSMUSG00000080401.1 ENSMUSG00000080401 ENSMUST00000116751 Gm23653 miRNA Interval_134320 chr6 25085335 25086600 + 0 NA Intergenic Intergenic -7064 ENSMUSG00000087867.1 ENSMUSG00000087867 ENSMUST00000157242 Gm24443 snoRNA Interval_33550 chr11 117156242 117157490 + 0 NA TTS (ENSMUSG00000020823.16) protein_coding-TTS (ENSMUSG00000020823.16) 1797 ENSMUSG00000020823.16 ENSMUSG00000020823 ENSMUST00000153437 Sec14l1 protein_coding Interval_122614 chr5 24214202 24215181 + 0 NA Intergenic Intergenic -4967 ENSMUSG00000099891.1 ENSMUSG00000099891 ENSMUST00000190879 Gm5575 processed_pseudogene Interval_89584 chr2 23005582 23006707 + 0 NA intron (ENSMUSG00000058835.14, intron 1 of 10) protein_coding-intron (ENSMUSG00000058835.14, intron 1 of 9) 13523 ENSMUSG00000083650.1 ENSMUSG00000083650 ENSMUST00000120528 Gm13357 processed_pseudogene Interval_65868 chr16 29915403 29915706 + 0 NA intron (ENSMUSG00000097313.2, intron 1 of 3) processed_transcript-intron (ENSMUSG00000097313.2, intron 1 of 3) 31200 ENSMUSG00000097313.2 ENSMUSG00000097313 ENSMUST00000232356 Gm26569 processed_transcript Interval_56547 chr14 120275133 120276058 + 0 NA promoter-TSS (ENSMUSG00000022139.17) protein_coding-promoter-TSS (ENSMUSG00000022139.17) -103646 ENSMUSG00000022139.17 ENSMUSG00000022139 ENSMUST00000227153 Mbnl2 protein_coding Interval_37359 chr12 65473762 65474561 + 0 NA Intergenic Intergenic -56091 ENSMUSG00000088441.1 ENSMUSG00000088441 ENSMUST00000157816 Gm25599 snRNA Interval_30655 chr11 95703889 95705452 + 0 NA intron (ENSMUSG00000086191.1, intron 1 of 1) antisense-intron (ENSMUSG00000086191.1, intron 1 of 1) -5527 ENSMUSG00000045075.3 ENSMUSG00000045075 ENSMUST00000191115 Gm9796 lincRNA Interval_689 chr1 9940620 9941506 + 0 NA TTS (ENSMUSG00000046101.16) protein_coding-TTS (ENSMUSG00000046101.16) 1486 ENSMUSG00000093178.1 ENSMUSG00000093178 ENSMUST00000175437 Snord87 snoRNA Interval_173251 chrX 75232842 75233105 + 0 NA promoter-TSS (ENSMUSG00000083736.1) processed_pseudogene-promoter-TSS (ENSMUSG00000083736.1) -90 ENSMUSG00000083736.1 ENSMUSG00000083736 ENSMUST00000121667 Gm6039 processed_pseudogene Interval_8331 chr1 137390116 137391364 + 0 NA Intergenic Intergenic -23493 ENSMUSG00000088164.1 ENSMUSG00000088164 ENSMUST00000157539 Gm23534 snoRNA Interval_163673 chr9 23741277 23741487 + 0 NA Intergenic Intergenic -35110 ENSMUSG00000111041.1 ENSMUSG00000111041 ENSMUST00000215669 Gm3011 processed_pseudogene Interval_27914 chr11 70821677 70822361 + 0 NA Intergenic Intergenic -9433 ENSMUSG00000057135.12 ENSMUSG00000057135 ENSMUST00000074572 Scimp protein_coding Interval_169651 chr9 99709812 99710225 + 0 NA promoter-TSS (ENSMUSG00000032473.13) protein_coding-promoter-TSS (ENSMUSG00000032473.13) -9 ENSMUSG00000032473.13 ENSMUSG00000032473 ENSMUST00000131922 Cldn18 protein_coding Interval_58234 chr15 31264064 31265898 + 0 NA intron (ENSMUSG00000039168.15, intron 2 of 3) protein_coding-intron (ENSMUSG00000039168.15, intron 2 of 3) -11510 ENSMUSG00000055416.6 ENSMUSG00000055416 ENSMUST00000068987 Fam136b-ps processed_pseudogene Interval_64445 chr16 11431394 11431630 + 0 NA intron (ENSMUSG00000071669.14, intron 11 of 20) protein_coding-intron (ENSMUSG00000071669.14, intron 4 of 13) 64794 ENSMUSG00000082653.1 ENSMUSG00000082653 ENSMUST00000117770 Gm15897 processed_pseudogene Interval_127904 chr5 108784251 108784638 + 0 NA intron (ENSMUSG00000004821.1, intron 2 of 4) protein_coding-intron (ENSMUSG00000004821.1, intron 2 of 4) -9462 ENSMUSG00000055385.12 ENSMUSG00000055385 ENSMUST00000068946 Rnf212 protein_coding Interval_50441 chr14 13248939 13249334 + 0 NA intron (ENSMUSG00000051729.12, intron 2 of 3) processed_transcript-intron (ENSMUSG00000051729.12, intron 2 of 3) -35705 ENSMUSG00000056296.17 ENSMUSG00000056296 ENSMUST00000112656 Synpr protein_coding Interval_39914 chr12 99738200 99738867 + 0 NA intron (ENSMUSG00000021176.6, intron 6 of 6) protein_coding-intron (ENSMUSG00000021176.6, intron 5 of 5) 23721 ENSMUSG00000113877.1 ENSMUSG00000113877 ENSMUST00000220762 Gm47208 TEC Interval_139248 chr6 97529363 97529611 + 0 NA intron (ENSMUSG00000030064.16, intron 1 of 7) protein_coding-intron (ENSMUSG00000030064.16, intron 1 of 23) 18080 ENSMUSG00000064724.1 ENSMUSG00000064724 ENSMUST00000082790 Gm25852 snoRNA Interval_99685 chr2 164184109 164184791 + 0 NA intron (ENSMUSG00000085649.7, intron 1 of 3) antisense-intron (ENSMUSG00000085649.7, intron 1 of 3) -1852 ENSMUSG00000040154.11 ENSMUSG00000040154 ENSMUST00000131974 Wfdc5 protein_coding Interval_94270 chr2 87264593 87264876 + 0 NA promoter-TSS (ENSMUSG00000084043.1) processed_pseudogene-promoter-TSS (ENSMUSG00000084043.1) -181 ENSMUSG00000084043.1 ENSMUSG00000084043 ENSMUST00000117753 Gm13732 processed_pseudogene Interval_129084 chr5 117322343 117322847 + 0 NA intron (ENSMUSG00000066894.14, intron 1 of 8) protein_coding-intron (ENSMUSG00000066894.14, intron 1 of 8) -1051 ENSMUSG00000066894.14 ENSMUSG00000066894 ENSMUST00000139026 Vsig10 protein_coding Interval_134836 chr6 32062229 32063220 + 0 NA Intergenic Intergenic 12478 ENSMUSG00000029766.7 ENSMUSG00000029766 ENSMUST00000156267 1700012A03Rik protein_coding Interval_11568 chr1 182787191 182788108 + 0 NA intron (ENSMUSG00000038576.15, intron 2 of 2) protein_coding-intron (ENSMUSG00000038576.15, intron 1 of 7) 23093 ENSMUSG00000038576.15 ENSMUSG00000038576 ENSMUST00000085724 Susd4 protein_coding Interval_12467 chr1 193742665 193742887 + 0 NA Intergenic Intergenic -124233 ENSMUSG00000104182.1 ENSMUSG00000104182 ENSMUST00000194272 Gm21362 processed_pseudogene Interval_80296 chr18 38930044 38931052 + 0 NA intron (ENSMUSG00000117994.1, intron 2 of 2) lincRNA-intron (ENSMUSG00000117994.1, intron 3 of 4) 37831 ENSMUSG00000117994.1 ENSMUSG00000117994 ENSMUST00000156167 Gm5820 lincRNA Interval_21580 chr10 130228208 130230211 + 0 NA Intergenic Intergenic -14806 ENSMUSG00000045559.6 ENSMUSG00000045559 ENSMUST00000058123 Olfr827 protein_coding Interval_16185 chr10 61309653 61309952 + 0 NA promoter-TSS (ENSMUSG00000061488.5) processed_pseudogene-promoter-TSS (ENSMUSG00000061488.5) -28 ENSMUSG00000061488.5 ENSMUSG00000061488 ENSMUST00000075382 Rpl27a-ps1 processed_pseudogene Interval_126609 chr5 90899846 90900728 + 0 NA Intergenic Intergenic -3586 ENSMUSG00000058427.10 ENSMUSG00000058427 ENSMUST00000075433 Cxcl2 protein_coding Interval_122295 chr5 21003006 21003650 + 0 NA intron (ENSMUSG00000028771.13, intron 7 of 9) protein_coding-intron (ENSMUSG00000028771.13, intron 9 of 17) -28424 ENSMUSG00000106158.1 ENSMUSG00000106158 ENSMUST00000196295 Gm43216 TEC Interval_58676 chr15 36961992 36963026 + 0 NA Intergenic Intergenic 23645 ENSMUSG00000115333.1 ENSMUSG00000115333 ENSMUST00000227227 Gm34590 lincRNA Interval_137452 chr6 72538312 72539188 + 0 NA Intergenic Intergenic -10708 ENSMUSG00000056737.14 ENSMUSG00000056737 ENSMUST00000127770 Capg protein_coding Interval_136060 chr6 50386449 50386782 + 0 NA intron (ENSMUSG00000029822.15, intron 1 of 5) protein_coding-intron (ENSMUSG00000029822.15, intron 2 of 21) -34658 ENSMUSG00000029822.15 ENSMUSG00000029822 ENSMUST00000154333 Osbpl3 protein_coding Interval_74959 chr17 58284302 58284683 + 0 NA intron (ENSMUSG00000038048.8, intron 13 of 23) protein_coding-intron (ENSMUSG00000038048.8, intron 13 of 23) -177833 ENSMUSG00000117281.1 ENSMUSG00000117281 ENSMUST00000233462 Gm49848 processed_pseudogene Interval_76991 chr17 85433139 85435284 + 0 NA intron (ENSMUSG00000071037.6, intron 8 of 10) protein_coding-intron (ENSMUSG00000071037.6, intron 8 of 10) -64422 ENSMUSG00000097803.1 ENSMUSG00000097803 ENSMUST00000181130 Rpl31-ps16 processed_pseudogene Interval_135850 chr6 47925895 47926550 + 0 NA promoter-TSS (ENSMUSG00000052763.7) protein_coding-promoter-TSS (ENSMUSG00000052763.7) -84 ENSMUSG00000052763.7 ENSMUSG00000052763 ENSMUST00000156500 Zfp212 protein_coding Interval_35263 chr12 19192392 19193560 + 0 NA Intergenic Intergenic 16873 ENSMUSG00000113205.1 ENSMUSG00000113205 ENSMUST00000222931 Gm48525 processed_pseudogene Interval_44709 chr13 47348727 47349210 + 0 NA Intergenic Intergenic -8029 ENSMUSG00000114958.1 ENSMUSG00000114958 ENSMUST00000224746 Gm48612 lincRNA Interval_56323 chr14 117361549 117362125 + 0 NA intron (ENSMUSG00000058571.11, intron 2 of 9) protein_coding-intron (ENSMUSG00000058571.11, intron 2 of 8) 436306 ENSMUSG00000058571.11 ENSMUSG00000058571 ENSMUST00000078849 Gpc6 protein_coding Interval_19421 chr10 99118882 99119101 + 0 NA intron (ENSMUSG00000019952.15, intron 2 of 12) protein_coding-intron (ENSMUSG00000019952.15, intron 2 of 11) 7334 ENSMUSG00000055108.6 ENSMUSG00000055108 ENSMUST00000060761 Phxr2 protein_coding Interval_165086 chr9 44489243 44491034 + 0 NA intron (ENSMUSG00000063382.6, intron 2 of 9) protein_coding-intron (ENSMUSG00000063382.6, intron 2 of 3) -6335 ENSMUSG00000111312.1 ENSMUSG00000111312 ENSMUST00000215551 Gm47205 TEC Interval_118036 chr4 128543025 128544805 + 0 NA intron (ENSMUSG00000028804.20, intron 57 of 70) protein_coding-intron (ENSMUSG00000028804.20, intron 57 of 70) -8660 ENSMUSG00000028804.20 ENSMUSG00000028804 ENSMUST00000221199 Csmd2 protein_coding Interval_89549 chr2 22621925 22624092 + 0 NA promoter-TSS (ENSMUSG00000026787.3) protein_coding-promoter-TSS (ENSMUSG00000026787.3) -296 ENSMUSG00000026787.3 ENSMUSG00000026787 ENSMUST00000156728 Gad2 protein_coding Interval_76849 chr17 84502910 84504033 + 0 NA Intergenic Intergenic 47772 ENSMUSG00000117391.1 ENSMUSG00000117391 ENSMUST00000234072 4930500A05Rik antisense Interval_14760 chr10 39640629 39641339 + 0 NA promoter-TSS (ENSMUSG00000019842.6) protein_coding-promoter-TSS (ENSMUSG00000019842.6) -5730 ENSMUSG00000019842.6 ENSMUSG00000019842 ENSMUST00000155945 Traf3ip2 protein_coding Interval_27443 chr11 67818525 67818811 + 0 NA Intergenic Intergenic 20381 ENSMUSG00000033044.12 ENSMUSG00000033044 ENSMUST00000168612 Dhrs7c protein_coding Interval_131801 chr5 139970262 139971577 + 0 NA intron (ENSMUSG00000048988.8, intron 1 of 1) protein_coding-intron (ENSMUSG00000048988.8, intron 1 of 1) -7128 ENSMUSG00000106090.1 ENSMUSG00000106090 ENSMUST00000196164 Gm43704 processed_pseudogene Interval_3350 chr1 57345165 57345731 + 0 NA Intergenic Intergenic 32096 ENSMUSG00000097519.2 ENSMUSG00000097519 ENSMUST00000181949 4930558J18Rik lincRNA Interval_1431 chr1 23255913 23257339 + 0 NA promoter-TSS (ENSMUSG00000102766.1) TEC-promoter-TSS (ENSMUSG00000102766.1) -220 ENSMUSG00000102766.1 ENSMUSG00000102766 ENSMUST00000195365 Gm6420 TEC Interval_81770 chr18 64526829 64527824 + 0 NA Intergenic Intergenic -15449 ENSMUSG00000024587.10 ENSMUSG00000024587 ENSMUST00000237027 Nars protein_coding Interval_53082 chr14 54328550 54330666 + 0 NA Intergenic Intergenic -4609 ENSMUSG00000105667.1 ENSMUSG00000105667 ENSMUST00000196637 Gm3945 processed_pseudogene Interval_81260 chr18 56824511 56825250 + 0 NA intron (ENSMUSG00000032656.14, intron 1 of 2) protein_coding-intron (ENSMUSG00000032656.14, intron 1 of 4) 55163 ENSMUSG00000087597.1 ENSMUSG00000087597 ENSMUST00000128240 Gm15345 antisense Interval_72081 chr17 27907460 27907826 + 0 NA promoter-TSS (ENSMUSG00000024218.13) protein_coding-promoter-TSS (ENSMUSG00000024218.13) -160 ENSMUSG00000117216.1 ENSMUSG00000117216 ENSMUST00000233056 Gm49801 antisense Interval_97284 chr2 132970504 132971053 + 0 NA Intergenic Intergenic 10390 ENSMUSG00000084393.1 ENSMUSG00000084393 ENSMUST00000121502 Gm14101 processed_pseudogene Interval_75493 chr17 67353081 67355071 + 0 NA promoter-TSS (ENSMUSG00000033278.10) protein_coding-promoter-TSS (ENSMUSG00000033278.10) -197531 ENSMUSG00000087829.1 ENSMUSG00000087829 ENSMUST00000157204 Gm22277 misc_RNA Interval_132853 chr5 148331619 148333076 + 0 NA exon (ENSMUSG00000041313.14, exon 13 of 13) protein_coding-exon (ENSMUSG00000041313.14, exon 13 of 13) 67444 ENSMUSG00000041313.14 ENSMUSG00000041313 ENSMUST00000201348 Slc7a1 protein_coding Interval_88076 chr19 58859475 58861403 + 0 NA exon (ENSMUSG00000025092.7, exon 1 of 2) protein_coding-exon (ENSMUSG00000025092.7, exon 1 of 2) -38318 ENSMUSG00000025092.7 ENSMUSG00000025092 ENSMUST00000237786 Hspa12a protein_coding Interval_40003 chr12 100414970 100415169 + 0 NA intron (ENSMUSG00000033530.8, intron 5 of 7) protein_coding-intron (ENSMUSG00000033530.8, intron 7 of 19) 29591 ENSMUSG00000113864.1 ENSMUSG00000113864 ENSMUST00000222952 Gm48381 TEC Interval_30469 chr11 94574418 94574674 + 0 NA intron (ENSMUSG00000076435.3, intron 1 of 6) protein_coding-intron (ENSMUSG00000076435.3, intron 1 of 15) 9499 ENSMUSG00000039084.8 ENSMUSG00000039084 ENSMUST00000040418 Chad protein_coding Interval_124669 chr5 53028510 53028999 + 0 NA Intergenic Intergenic -9327 ENSMUSG00000029188.14 ENSMUSG00000029188 ENSMUST00000147243 Slc34a2 protein_coding Interval_38477 chr12 79313889 79314207 + 0 NA intron (ENSMUSG00000059060.15, intron 4 of 10) protein_coding-intron (ENSMUSG00000059060.15, intron 4 of 7) -13305 ENSMUSG00000059060.15 ENSMUSG00000059060 ENSMUST00000221257 Rad51b protein_coding Interval_41318 chr12 112678229 112680090 + 0 NA intron (ENSMUSG00000037638.5, intron 1 of 2) protein_coding-intron (ENSMUSG00000037638.5, intron 1 of 1) 331 ENSMUSG00000037638.5 ENSMUSG00000037638 ENSMUST00000173942 Zbtb42 protein_coding Interval_28527 chr11 76510955 76511454 + 0 NA intron (ENSMUSG00000017631.19, intron 1 of 22) protein_coding-intron (ENSMUSG00000017631.19, intron 1 of 22) -2865 ENSMUSG00000080763.2 ENSMUSG00000080763 ENSMUST00000119724 Gm12341 processed_pseudogene Interval_18093 chr10 82319958 82320823 + 0 NA Intergenic Intergenic -3808 ENSMUSG00000044581.8 ENSMUSG00000044581 ENSMUST00000217661 4932415D10Rik protein_coding Interval_30308 chr11 93458768 93458935 + 0 NA intron (ENSMUSG00000056158.14, intron 4 of 9) protein_coding-intron (ENSMUSG00000056158.14, intron 4 of 9) -45527 ENSMUSG00000064743.1 ENSMUSG00000064743 ENSMUST00000082809 Gm24856 snRNA Interval_159054 chr8 89130255 89130649 + 0 NA Intergenic Intergenic 16606 ENSMUSG00000094790.2 ENSMUSG00000094790 ENSMUST00000177870 Gm6625 processed_pseudogene Interval_48368 chr13 98556728 98557164 + 0 NA promoter-TSS (ENSMUSG00000114912.1) processed_pseudogene-promoter-TSS (ENSMUSG00000114912.1) -815 ENSMUSG00000114912.1 ENSMUSG00000114912 ENSMUST00000224425 Gm48049 processed_pseudogene Interval_93398 chr2 72812565 72812923 + 0 NA intron (ENSMUSG00000085427.7, intron 1 of 5) lincRNA-intron (ENSMUSG00000085427.7, intron 1 of 5) 973 ENSMUSG00000085427.7 ENSMUSG00000085427 ENSMUST00000125746 6430710C18Rik lincRNA Interval_91321 chr2 37766291 37768013 + 0 NA Intergenic Intergenic -24019 ENSMUSG00000035403.10 ENSMUSG00000035403 ENSMUST00000137693 Crb2 protein_coding Interval_77835 chr18 4320986 4321657 + 0 NA Intergenic Intergenic -26839 ENSMUSG00000117482.1 ENSMUSG00000117482 ENSMUST00000234061 Gm7400 processed_pseudogene Interval_125549 chr5 70071242 70071444 + 0 NA Intergenic Intergenic 115503 ENSMUSG00000088863.1 ENSMUSG00000088863 ENSMUST00000158238 Gm23067 snRNA Interval_93266 chr2 71563211 71564100 + 0 NA Intergenic Intergenic -17705 ENSMUSG00000023391.8 ENSMUSG00000023391 ENSMUST00000134249 Dlx2 protein_coding Interval_83265 chr18 83113356 83113716 + 0 NA Intergenic Intergenic -5676 ENSMUSG00000100430.2 ENSMUSG00000100430 ENSMUST00000236396 1700095A13Rik lincRNA Interval_12002 chr1 188694043 188694251 + 0 NA intron (ENSMUSG00000026609.15, intron 37 of 70) protein_coding-intron (ENSMUSG00000026609.15, intron 37 of 70) -66329 ENSMUSG00000084550.1 ENSMUSG00000084550 ENSMUST00000122601 Gm25269 snRNA Interval_125768 chr5 74010442 74011950 + 0 NA intron (ENSMUSG00000054814.14, intron 4 of 7) protein_coding-intron (ENSMUSG00000054814.14, intron 5 of 8) -3019 ENSMUSG00000087250.2 ENSMUSG00000087250 ENSMUST00000129275 Usp46os1 antisense Interval_8053 chr1 135460277 135461579 + 0 NA exon (ENSMUSG00000009418.16, exon 1 of 1) protein_coding-exon (ENSMUSG00000009418.16, exon 1 of 1) 261 ENSMUSG00000009418.16 ENSMUSG00000009418 ENSMUST00000112103 Nav1 protein_coding Interval_4762 chr1 78475467 78475892 + 0 NA intron (ENSMUSG00000026245.16, intron 4 of 5) protein_coding-intron (ENSMUSG00000026245.16, intron 5 of 16) -8753 ENSMUSG00000104018.1 ENSMUSG00000104018 ENSMUST00000195509 4833412K13Rik TEC Interval_94163 chr2 84779085 84779968 + 0 NA Intergenic Intergenic -4398 ENSMUSG00000023224.12 ENSMUSG00000023224 ENSMUST00000131456 Serping1 protein_coding Interval_174324 chrX 144379426 144380335 + 0 NA Intergenic Intergenic -58625 ENSMUSG00000080922.1 ENSMUSG00000080922 ENSMUST00000121333 Gm2214 processed_pseudogene Interval_55918 chr14 102288527 102288847 + 0 NA Intergenic Intergenic 40974 ENSMUSG00000095037.1 ENSMUSG00000095037 ENSMUST00000180276 Gm22347 snoRNA Interval_102240 chr3 19815041 19816101 + 0 NA Intergenic Intergenic 46698 ENSMUSG00000106182.1 ENSMUSG00000106182 ENSMUST00000197778 Gm7442 processed_pseudogene Interval_111562 chr4 23440145 23440698 + 0 NA Intergenic Intergenic -44399 ENSMUSG00000083785.1 ENSMUSG00000083785 ENSMUST00000120471 Gm11888 processed_pseudogene Interval_46111 chr13 61811444 61811892 + 0 NA intron (ENSMUSG00000113626.1, intron 1 of 2) transcribed_processed_pseudogene-intron (ENSMUSG00000113626.1, intron 1 of 1) 7402 ENSMUSG00000113626.1 ENSMUSG00000113626 ENSMUST00000220769 Gm7240 transcribed_processed_pseudogene Interval_134567 chr6 29637624 29640227 + 0 NA Intergenic Intergenic -67406 ENSMUSG00000012535.14 ENSMUSG00000012535 ENSMUST00000166844 Tnpo3 protein_coding Interval_46239 chr13 62879632 62880777 + 0 NA intron (ENSMUSG00000069805.10, intron 1 of 6) protein_coding-intron (ENSMUSG00000069805.10, intron 1 of 6) -7446 ENSMUSG00000069805.10 ENSMUSG00000069805 ENSMUST00000134814 Fbp1 protein_coding Interval_71788 chr17 26099027 26099524 + 0 NA promoter-TSS (ENSMUSG00000049124.4) processed_pseudogene-promoter-TSS (ENSMUSG00000049124.4) -54 ENSMUSG00000049124.4 ENSMUSG00000049124 ENSMUST00000053575 Gm8186 processed_pseudogene Interval_144908 chr7 28871155 28871903 + 0 NA intron (ENSMUSG00000108930.1, intron 1 of 2) antisense-intron (ENSMUSG00000108930.1, intron 1 of 2) 4802 ENSMUSG00000108930.1 ENSMUSG00000108930 ENSMUST00000207552 Gm10648 antisense Interval_12099 chr1 189740332 189740989 + 0 NA intron (ENSMUSG00000026604.17, intron 1 of 9) protein_coding-intron (ENSMUSG00000026604.17, intron 1 of 18) 55332 ENSMUSG00000103374.1 ENSMUSG00000103374 ENSMUST00000193510 Gm37239 processed_pseudogene Interval_19694 chr10 108155203 108155480 + 0 NA Intergenic Intergenic -12909 ENSMUSG00000112401.1 ENSMUSG00000112401 ENSMUST00000219675 Gm47999 processed_pseudogene Interval_7621 chr1 132557233 132557708 + 0 NA Intergenic Intergenic -14605 ENSMUSG00000053024.14 ENSMUSG00000053024 ENSMUST00000186530 Cntn2 protein_coding Interval_112173 chr4 35175479 35176370 + 0 NA Intergenic Intergenic -18440 ENSMUSG00000073910.10 ENSMUSG00000073910 ENSMUST00000155725 Mob3b protein_coding Interval_94901 chr2 101481294 101482132 + 0 NA Intergenic Intergenic -88911 ENSMUSG00000093614.1 ENSMUSG00000093614 ENSMUST00000177431 Gm20693 processed_pseudogene Interval_66755 chr16 37045659 37045995 + 0 NA exon (ENSMUSG00000034206.15, exon 14 of 30) protein_coding-exon (ENSMUSG00000034206.15, exon 14 of 30) 34041 ENSMUSG00000034206.15 ENSMUSG00000034206 ENSMUST00000182717 Polq protein_coding Interval_80955 chr18 51003043 51003267 + 0 NA promoter-TSS (ENSMUSG00000118088.1) processed_pseudogene-promoter-TSS (ENSMUSG00000118088.1) 51 ENSMUSG00000118088.1 ENSMUSG00000118088 ENSMUST00000236182 Gm3815 processed_pseudogene Interval_129080 chr5 117303629 117305432 + 0 NA Intergenic Intergenic 4641 ENSMUSG00000106714.1 ENSMUSG00000106714 ENSMUST00000201584 Gm42546 TEC Interval_56511 chr14 119558755 119559018 + 0 NA intron (ENSMUSG00000053465.6, intron 1 of 1) protein_coding-intron (ENSMUSG00000053465.6, intron 1 of 1) -85126 ENSMUSG00000115196.1 ENSMUSG00000115196 ENSMUST00000226465 Gm6212 processed_pseudogene Interval_52561 chr14 47514993 47516289 + 0 NA intron (ENSMUSG00000037536.14, intron 4 of 5) protein_coding-intron (ENSMUSG00000037536.14, intron 1 of 1) -7454 ENSMUSG00000115145.1 ENSMUSG00000115145 ENSMUST00000228204 Gm35166 antisense Interval_92423 chr2 59647861 59648854 + 0 NA exon (ENSMUSG00000035168.16, exon 2 of 2) protein_coding-exon (ENSMUSG00000035168.16, exon 2 of 2) -83673 ENSMUSG00000081157.1 ENSMUSG00000081157 ENSMUST00000118837 Gm13552 processed_pseudogene Interval_146936 chr7 56013718 56014170 + 0 NA promoter-TSS (ENSMUSG00000078087.5) processed_pseudogene-promoter-TSS (ENSMUSG00000078087.5) -72 ENSMUSG00000078087.5 ENSMUSG00000078087 ENSMUST00000183090 Rps12l1 processed_pseudogene Interval_150521 chr7 111829850 111830394 + 0 NA Intergenic Intergenic 28433 ENSMUSG00000110065.1 ENSMUSG00000110065 ENSMUST00000211213 Gm45588 processed_pseudogene Interval_36267 chr12 40478916 40479450 + 0 NA intron (ENSMUSG00000035954.10, intron 1 of 5) protein_coding-intron (ENSMUSG00000035954.10, intron 1 of 52) 33100 ENSMUSG00000035954.10 ENSMUSG00000035954 ENSMUST00000220850 Dock4 protein_coding Interval_30614 chr11 95489998 95490242 + 0 NA intron (ENSMUSG00000057522.15, intron 6 of 6) protein_coding-intron (ENSMUSG00000057522.15, intron 8 of 9) 15801 ENSMUSG00000057522.15 ENSMUSG00000057522 ENSMUST00000150922 Spop protein_coding Interval_125543 chr5 69601254 69601495 + 0 NA Intergenic Intergenic -9100 ENSMUSG00000029209.15 ENSMUSG00000029209 ENSMUST00000153536 Gnpda2 protein_coding Interval_132254 chr5 143633856 143634077 + 0 NA promoter-TSS (ENSMUSG00000018001.18) protein_coding-promoter-TSS (ENSMUSG00000018001.18) 11465 ENSMUSG00000018001.18 ENSMUSG00000018001 ENSMUST00000110727 Cyth3 protein_coding Interval_168212 chr9 77975260 77975560 + 0 NA intron (ENSMUSG00000032349.13, intron 3 of 5) protein_coding-intron (ENSMUSG00000032349.13, intron 3 of 7) -17189 ENSMUSG00000111610.1 ENSMUSG00000111610 ENSMUST00000216017 Gm34829 lincRNA Interval_24025 chr11 29602078 29604263 + 0 NA promoter-TSS (ENSMUSG00000085893.1) processed_pseudogene-promoter-TSS (ENSMUSG00000085893.1) -557 ENSMUSG00000085893.1 ENSMUSG00000085893 ENSMUST00000146791 Gm12091 processed_pseudogene Interval_102911 chr3 32730652 32731357 + 0 NA intron (ENSMUSG00000037531.8, intron 2 of 4) protein_coding-intron (ENSMUSG00000037531.8, intron 4 of 6) -6072 ENSMUSG00000027673.12 ENSMUSG00000027673 ENSMUST00000122290 Ndufb5 protein_coding Interval_151530 chr7 123314112 123314330 + 0 NA intron (ENSMUSG00000030766.15, intron 8 of 19) protein_coding-intron (ENSMUSG00000030766.15, intron 9 of 18) 49032 ENSMUSG00000030769.15 ENSMUSG00000030769 ENSMUST00000206180 Slc5a11 protein_coding Interval_110974 chr4 10982304 10982661 + 0 NA Intergenic Intergenic 25445 ENSMUSG00000049969.3 ENSMUSG00000049969 ENSMUST00000137891 Plekhf2 protein_coding Interval_55482 chr14 88399124 88399514 + 0 NA Intergenic Intergenic 3379 ENSMUSG00000115202.1 ENSMUSG00000115202 ENSMUST00000228811 Gm9275 processed_pseudogene Interval_15099 chr10 42572478 42573531 + 0 NA intron (ENSMUSG00000019803.11, intron 3 of 3) protein_coding-intron (ENSMUSG00000019803.11, intron 3 of 8) 7770 ENSMUSG00000019803.11 ENSMUSG00000019803 ENSMUST00000143891 Nr2e1 protein_coding Interval_17421 chr10 76513260 76514705 + 0 NA intron (ENSMUSG00000001150.7, intron 2 of 2) protein_coding-intron (ENSMUSG00000001150.7, intron 28 of 28) -27900 ENSMUSG00000033105.12 ENSMUSG00000033105 ENSMUST00000162282 Lss protein_coding Interval_92282 chr2 58108168 58108367 + 0 NA exon (ENSMUSG00000053472.3, exon 1 of 1) processed_pseudogene-exon (ENSMUSG00000053472.3, exon 1 of 1) 207 ENSMUSG00000053472.3 ENSMUSG00000053472 ENSMUST00000121169 Gm13534 processed_pseudogene Interval_101747 chr3 9356010 9356605 + 0 NA Intergenic Intergenic -45868 ENSMUSG00000088229.1 ENSMUSG00000088229 ENSMUST00000157604 Gm22604 misc_RNA Interval_150992 chr7 117436811 117437089 + 0 NA intron (ENSMUSG00000030657.11, intron 1 of 6) protein_coding-intron (ENSMUSG00000030657.11, intron 1 of 11) -38542 ENSMUSG00000030657.11 ENSMUSG00000030657 ENSMUST00000161889 Xylt1 protein_coding Interval_94883 chr2 100034930 100035203 + 0 NA Intergenic Intergenic -23867 ENSMUSG00000082259.1 ENSMUSG00000082259 ENSMUST00000121353 Gm13808 processed_pseudogene Interval_166631 chr9 61404136 61405364 + 0 NA exon (ENSMUSG00000032280.16, exon 1 of 11) protein_coding-exon (ENSMUSG00000032280.16, exon 1 of 11) 32384 ENSMUSG00000032280.16 ENSMUSG00000032280 ENSMUST00000162281 Tle3 protein_coding Interval_67390 chr16 48281127 48282029 + 0 NA Intergenic Intergenic -2155 ENSMUSG00000058550.15 ENSMUSG00000058550 ENSMUST00000050705 Dppa4 protein_coding Interval_140599 chr6 119983258 119983651 + 0 NA intron (ENSMUSG00000045962.16, intron 1 of 7) protein_coding-intron (ENSMUSG00000045962.16, intron 4 of 27) -22544 ENSMUSG00000089936.1 ENSMUSG00000089936 ENSMUST00000160032 Gm16199 processed_pseudogene Interval_82869 chr18 77609420 77609736 + 0 NA Intergenic Intergenic -73036 ENSMUSG00000077593.1 ENSMUSG00000077593 ENSMUST00000104405 Gm26014 snoRNA Interval_35605 chr12 25269022 25269405 + 0 NA Intergenic Intergenic -13382 ENSMUSG00000113745.1 ENSMUSG00000113745 ENSMUST00000221995 Gm19340 processed_pseudogene Interval_118382 chr4 130999911 131000343 + 0 NA TTS (ENSMUSG00000086262.7) lincRNA-TTS (ENSMUSG00000086262.7) 10347 ENSMUSG00000086262.7 ENSMUSG00000086262 ENSMUST00000153810 A930031H19Rik lincRNA Interval_67303 chr16 45767471 45767902 + 0 NA intron (ENSMUSG00000033149.17, intron 2 of 2) protein_coding-intron (ENSMUSG00000033149.17, intron 12 of 17) 4597 ENSMUSG00000033149.17 ENSMUSG00000033149 ENSMUST00000136317 Phldb2 protein_coding Interval_158620 chr8 84810763 84811451 + 0 NA Intergenic Intergenic -20415 ENSMUSG00000033751.5 ENSMUSG00000033751 ENSMUST00000036734 Gadd45gip1 protein_coding Interval_73099 chr17 34800559 34800900 + 0 NA TTS (ENSMUSG00000024365.9) protein_coding-TTS (ENSMUSG00000024365.9) 2673 ENSMUSG00000024365.9 ENSMUSG00000024365 ENSMUST00000173394 Cyp21a1 protein_coding Interval_154130 chr8 12937527 12937754 + 0 NA intron (ENSMUSG00000031442.21, intron 1 of 2) protein_coding-intron (ENSMUSG00000031442.21, intron 2 of 29) 5978 ENSMUSG00000031442.21 ENSMUSG00000031442 ENSMUST00000134989 Mcf2l protein_coding Interval_433 chr1 5206807 5207903 + 0 NA Intergenic Intergenic 69982 ENSMUSG00000104352.1 ENSMUSG00000104352 ENSMUST00000193351 Gm7182 processed_pseudogene Interval_108791 chr3 131291046 131291516 + 0 NA exon (ENSMUSG00000027983.13, exon 5 of 5) protein_coding-exon (ENSMUSG00000027983.13, exon 5 of 5) -6137 ENSMUSG00000106268.1 ENSMUSG00000106268 ENSMUST00000198141 Gm18492 processed_pseudogene Interval_3003 chr1 52079796 52080980 + 0 NA intron (ENSMUSG00000062939.11, intron 11 of 24) protein_coding-intron (ENSMUSG00000062939.11, intron 10 of 23) 3127 ENSMUSG00000101628.1 ENSMUSG00000101628 ENSMUST00000185516 Gm28177 processed_transcript Interval_68603 chr16 80888195 80888424 + 0 NA Intergenic Intergenic -61340 ENSMUSG00000116566.1 ENSMUSG00000116566 ENSMUST00000232298 Fkbp1a-ps3 processed_pseudogene Interval_168617 chr9 84239536 84241375 + 0 NA Intergenic Intergenic 52100 ENSMUSG00000077666.1 ENSMUSG00000077666 ENSMUST00000104478 Gm26146 snRNA Interval_99390 chr2 160537170 160538145 + 0 NA Intergenic Intergenic -45700 ENSMUSG00000078955.3 ENSMUSG00000078955 ENSMUST00000128681 Gm14222 sense_intronic Interval_20069 chr10 113113181 113114224 + 0 NA intron (ENSMUSG00000112228.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000112228.1, intron 1 of 2) 313 ENSMUSG00000112228.1 ENSMUSG00000112228 ENSMUST00000220016 Gm47524 lincRNA Interval_108382 chr3 126459501 126460036 + 0 NA Intergenic Intergenic 12025 ENSMUSG00000105233.1 ENSMUSG00000105233 ENSMUST00000197129 Gm20568 processed_pseudogene Interval_112414 chr4 41118456 41119371 + 0 NA exon (ENSMUSG00000028430.14, exon 16 of 26) protein_coding-exon (ENSMUSG00000028430.14, exon 16 of 26) 4386 ENSMUSG00000028430.14 ENSMUSG00000028430 ENSMUST00000135059 Nol6 protein_coding Interval_65575 chr16 23484381 23485011 + 0 NA intron (ENSMUSG00000022887.9, intron 6 of 8) protein_coding-intron (ENSMUSG00000022887.9, intron 6 of 15) -29574 ENSMUSG00000116481.1 ENSMUSG00000116481 ENSMUST00000229821 Gm49514 processed_pseudogene Interval_23731 chr11 25490464 25490655 + 0 NA Intergenic Intergenic 189296 ENSMUSG00000086439.1 ENSMUSG00000086439 ENSMUST00000145127 Gm12069 lincRNA Interval_83429 chr18 85284882 85285274 + 0 NA Intergenic Intergenic 213242 ENSMUSG00000118198.1 ENSMUSG00000118198 ENSMUST00000237500 Gm50370 lincRNA Interval_163675 chr9 23981435 23982337 + 0 NA Intergenic Intergenic 36273 ENSMUSG00000111477.1 ENSMUSG00000111477 ENSMUST00000215011 Gm47668 processed_pseudogene Interval_96965 chr2 130068014 130068826 + 0 NA Intergenic Intergenic -3304 ENSMUSG00000089152.1 ENSMUSG00000089152 ENSMUST00000158527 Gm22424 snoRNA Interval_116713 chr4 116788947 116789401 + 0 NA intron (ENSMUSG00000033985.17, intron 1 of 5) protein_coding-intron (ENSMUSG00000033985.17, intron 4 of 10) 16018 ENSMUSG00000028688.13 ENSMUSG00000028688 ENSMUST00000146246 Toe1 protein_coding Interval_166664 chr9 61697202 61698266 + 0 NA Intergenic Intergenic -65350 ENSMUSG00000111739.1 ENSMUSG00000111739 ENSMUST00000213572 Gm47241 processed_pseudogene Interval_110425 chr3 157993068 157993276 + 0 NA promoter-TSS (ENSMUSG00000039988.14) protein_coding-promoter-TSS (ENSMUSG00000039988.14) 4651 ENSMUSG00000039988.14 ENSMUSG00000039988 ENSMUST00000199574 Ankrd13c protein_coding Interval_138430 chr6 88139957 88140474 + 0 NA Intergenic Intergenic -35957 ENSMUSG00000099095.1 ENSMUSG00000099095 ENSMUST00000185149 Mir6376 miRNA Interval_113494 chr4 55349405 55350774 + 0 NA promoter-TSS (ENSMUSG00000028426.10) protein_coding-promoter-TSS (ENSMUSG00000028426.10) -1 ENSMUSG00000028426.10 ENSMUSG00000028426 ENSMUST00000156263 Rad23b protein_coding Interval_164191 chr9 32357062 32357522 + 0 NA intron (ENSMUSG00000111056.1, intron 2 of 2) lincRNA-intron (ENSMUSG00000111056.1, intron 2 of 2) 8610 ENSMUSG00000111056.1 ENSMUSG00000111056 ENSMUST00000213360 Gm39317 lincRNA Interval_90882 chr2 33190261 33190976 + 0 NA intron (ENSMUSG00000038831.16, intron 8 of 17) protein_coding-intron (ENSMUSG00000038831.16, intron 7 of 16) 12716 ENSMUSG00000085087.1 ENSMUSG00000085087 ENSMUST00000139288 Gm13528 antisense Interval_102867 chr3 32396464 32397978 + 0 NA promoter-TSS (ENSMUSG00000027665.13) protein_coding-promoter-TSS (ENSMUSG00000027665.13) -24232 ENSMUSG00000102825.1 ENSMUSG00000102825 ENSMUST00000191961 Gm36990 TEC Interval_174778 chrX 166509706 166510886 + 0 NA exon (ENSMUSG00000051224.13, exon 1 of 5) protein_coding-exon (ENSMUSG00000051224.13, exon 1 of 5) -6899 ENSMUSG00000051224.13 ENSMUSG00000051224 ENSMUST00000112187 Tceanc protein_coding Interval_174268 chrX 142698283 142698583 + 0 NA intron (ENSMUSG00000047045.17, intron 2 of 8) protein_coding-intron (ENSMUSG00000047045.17, intron 2 of 6) -40567 ENSMUSG00000076011.1 ENSMUSG00000076011 ENSMUST00000102057 Mir652 miRNA Interval_139970 chr6 113117602 113117781 + 0 NA TTS (ENSMUSG00000034269.12) protein_coding-TTS (ENSMUSG00000034269.12) 7274 ENSMUSG00000034269.12 ENSMUSG00000034269 ENSMUST00000156048 Setd5 protein_coding Interval_162185 chr8 125772420 125773996 + 0 NA intron (ENSMUSG00000060212.13, intron 11 of 18) protein_coding-intron (ENSMUSG00000060212.13, intron 26 of 33) 37373 ENSMUSG00000031851.14 ENSMUSG00000031851 ENSMUST00000152189 Ntpcr protein_coding Interval_130796 chr5 130635480 130635716 + 0 NA intron (ENSMUSG00000060371.12, intron 3 of 5) protein_coding-intron (ENSMUSG00000060371.12, intron 4 of 6) -17047 ENSMUSG00000106849.1 ENSMUSG00000106849 ENSMUST00000201334 Gm43418 TEC Interval_115752 chr4 103349342 103349845 + 0 NA intron (ENSMUSG00000035069.3, intron 2 of 3) protein_coding-intron (ENSMUSG00000035069.3, intron 7 of 8) 25109 ENSMUSG00000035069.3 ENSMUSG00000035069 ENSMUST00000133178 Oma1 protein_coding Interval_106913 chr3 101830188 101830743 + 0 NA intron (ENSMUSG00000044313.13, intron 2 of 6) protein_coding-intron (ENSMUSG00000044313.13, intron 2 of 6) 18494 ENSMUSG00000044313.13 ENSMUSG00000044313 ENSMUST00000118411 Mab21l3 protein_coding Interval_11120 chr1 179501108 179501448 + 0 NA intron (ENSMUSG00000055067.15, intron 1 of 11) protein_coding-intron (ENSMUSG00000055067.15, intron 1 of 5) 16727 ENSMUSG00000055067.15 ENSMUSG00000055067 ENSMUST00000194237 Smyd3 protein_coding Interval_123473 chr5 32746111 32746652 + 0 NA promoter-TSS (ENSMUSG00000023452.19) protein_coding-promoter-TSS (ENSMUSG00000023452.19) -5527 ENSMUSG00000023452.19 ENSMUSG00000023452 ENSMUST00000145759 Pisd protein_coding Interval_92442 chr2 59745404 59746490 + 0 NA intron (ENSMUSG00000035168.16, intron 1 of 15) protein_coding-intron (ENSMUSG00000035168.16, intron 4 of 26) -60121 ENSMUSG00000035168.16 ENSMUSG00000035168 ENSMUST00000147650 Tanc1 protein_coding Interval_4870 chr1 80622518 80623367 + 0 NA intron (ENSMUSG00000038608.15, intron 3 of 13) protein_coding-intron (ENSMUSG00000038608.15, intron 3 of 55) 46622 ENSMUSG00000103192.1 ENSMUSG00000103192 ENSMUST00000194285 Gm37645 TEC Interval_90642 chr2 31626603 31627908 + 0 NA Intergenic Intergenic -12782 ENSMUSG00000079466.2 ENSMUSG00000079466 ENSMUST00000113470 Prdm12 protein_coding Interval_64874 chr16 16870417 16871268 + 0 NA promoter-TSS (ENSMUSG00000022779.16) protein_coding-promoter-TSS (ENSMUSG00000022779.16) 1 ENSMUSG00000059305.12 ENSMUSG00000059305 ENSMUST00000231345 Vpreb1 protein_coding Interval_164084 chr9 31378302 31378746 + 0 NA TTS (ENSMUSG00000042496.18) protein_coding-TTS (ENSMUSG00000042496.18) -17627 ENSMUSG00000042185.14 ENSMUSG00000042185 ENSMUST00000143558 Nfrkb protein_coding Interval_172794 chrX 49351598 49352061 + 0 NA intron (ENSMUSG00000086948.1, intron 1 of 3) antisense-intron (ENSMUSG00000086948.1, intron 1 of 3) -6592 ENSMUSG00000087369.1 ENSMUSG00000087369 ENSMUST00000144294 Gm14696 lincRNA Interval_155554 chr8 34372282 34373432 + 0 NA Intergenic Intergenic -10015 ENSMUSG00000109964.1 ENSMUSG00000109964 ENSMUST00000210560 Gm45350 lincRNA Interval_86644 chr19 42255467 42256507 + 0 NA exon (ENSMUSG00000042532.14, exon 1 of 5) protein_coding-exon (ENSMUSG00000042532.14, exon 1 of 5) 8413 ENSMUSG00000042532.14 ENSMUSG00000042532 ENSMUST00000087123 Golga7b protein_coding Interval_91533 chr2 41472969 41474005 + 0 NA intron (ENSMUSG00000049252.17, intron 9 of 62) protein_coding-intron (ENSMUSG00000049252.17, intron 12 of 90) 474630 ENSMUSG00000083260.1 ENSMUSG00000083260 ENSMUST00000121274 Gm13460 processed_pseudogene Interval_87907 chr19 57031389 57033119 + 0 NA TTS (ENSMUSG00000025085.16) protein_coding-TTS (ENSMUSG00000025085.16) -95016 ENSMUSG00000025083.18 ENSMUSG00000025083 ENSMUST00000132851 Afap1l2 protein_coding Interval_167366 chr9 67839918 67840904 + 0 NA promoter-TSS (ENSMUSG00000035284.10) protein_coding-promoter-TSS (ENSMUSG00000035284.10) -1 ENSMUSG00000035284.10 ENSMUSG00000035284 ENSMUST00000215524 Vps13c protein_coding Interval_117978 chr4 127435180 127435728 + 0 NA Intergenic Intergenic -26656 ENSMUSG00000079998.2 ENSMUSG00000079998 ENSMUST00000116114 Gm12947 processed_pseudogene Interval_6737 chr1 119082112 119084100 + 0 NA Intergenic Intergenic 24637 ENSMUSG00000097408.1 ENSMUSG00000097408 ENSMUST00000181458 Gm26831 lincRNA Interval_163588 chr9 22364927 22365722 + 0 NA intron (ENSMUSG00000036777.8, intron 8 of 23) protein_coding-intron (ENSMUSG00000036777.8, intron 8 of 23) 6455 ENSMUSG00000111069.1 ENSMUSG00000111069 ENSMUST00000214468 Gm48646 sense_intronic Interval_88435 chr2 5042061 5042574 + 0 NA intron (ENSMUSG00000026672.11, intron 5 of 13) protein_coding-intron (ENSMUSG00000026672.11, intron 5 of 14) 5037 ENSMUSG00000086430.1 ENSMUSG00000086430 ENSMUST00000145585 4930551O13Rik antisense Interval_82062 chr18 67443769 67444031 + 0 NA TTS (ENSMUSG00000024527.10) protein_coding-TTS (ENSMUSG00000024527.10) -7952 ENSMUSG00000024527.10 ENSMUSG00000024527 ENSMUST00000236810 Afg3l2 protein_coding Interval_118405 chr4 131173719 131174177 + 0 NA Intergenic Intergenic -65329 ENSMUSG00000088041.1 ENSMUSG00000088041 ENSMUST00000157416 Gm25261 snoRNA Interval_172479 chrX 20945882 20946217 + 0 NA intron (ENSMUSG00000001134.9, intron 4 of 4) protein_coding-intron (ENSMUSG00000009406.13, intron 1 of 5) 4559 ENSMUSG00000009406.13 ENSMUSG00000009406 ENSMUST00000148133 Elk1 protein_coding Interval_155545 chr8 34224624 34225203 + 0 NA intron (ENSMUSG00000100605.1, intron 3 of 3) lincRNA-intron (ENSMUSG00000100605.1, intron 3 of 3) 8054 ENSMUSG00000100605.1 ENSMUSG00000100605 ENSMUST00000188318 Gm29243 lincRNA Interval_89314 chr2 19263553 19263833 + 0 NA intron (ENSMUSG00000037683.14, intron 8 of 19) protein_coding-intron (ENSMUSG00000037683.14, intron 8 of 18) 64391 ENSMUSG00000037683.14 ENSMUSG00000037683 ENSMUST00000049255 Armc3 protein_coding Interval_17716 chr10 79724677 79724982 + 0 NA intron (ENSMUSG00000020331.9, intron 2 of 7) protein_coding-intron (ENSMUSG00000020331.9, intron 2 of 8) 8195 ENSMUSG00000020331.9 ENSMUSG00000020331 ENSMUST00000020581 Hcn2 protein_coding Interval_156422 chr8 48033759 48033953 + 0 NA Intergenic Intergenic -24723 ENSMUSG00000110624.1 ENSMUSG00000110624 ENSMUST00000212073 Gm32052 lincRNA Interval_110555 chr4 3843794 3844042 + 0 NA Intergenic Intergenic -8253 ENSMUSG00000028234.6 ENSMUSG00000028234 ENSMUST00000103009 Rps20 protein_coding Interval_37492 chr12 69347625 69348280 + 0 NA intron (ENSMUSG00000020982.9, intron 7 of 13) protein_coding-intron (ENSMUSG00000020982.9, intron 7 of 32) 9186 ENSMUSG00000020982.9 ENSMUSG00000020982 ENSMUST00000222065 Nemf protein_coding Interval_17009 chr10 70396594 70397297 + 0 NA Intergenic Intergenic 18636 ENSMUSG00000112884.1 ENSMUSG00000112884 ENSMUST00000219437 Gm47946 lincRNA Interval_91416 chr2 38647315 38647581 + 0 NA Intergenic Intergenic -3528 ENSMUSG00000026750.6 ENSMUSG00000026750 ENSMUST00000151981 Psmb7 protein_coding Interval_81171 chr18 55627080 55627293 + 0 NA Intergenic Intergenic -4266 ENSMUSG00000092702.2 ENSMUSG00000092702 ENSMUST00000174961 Gm24514 misc_RNA Interval_151581 chr7 124126536 124126744 + 0 NA intron (ENSMUSG00000078591.1, intron 1 of 1) protein_coding-intron (ENSMUSG00000078591.1, intron 1 of 1) -19641 ENSMUSG00000077176.1 ENSMUSG00000077176 ENSMUST00000103988 Gm25759 snoRNA Interval_24053 chr11 29810502 29810733 + 0 NA intron (ENSMUSG00000044072.14, intron 3 of 3) protein_coding-intron (ENSMUSG00000044072.14, intron 16 of 41) -7518 ENSMUSG00000044072.14 ENSMUSG00000044072 ENSMUST00000109452 Eml6 protein_coding Interval_103499 chr3 45237437 45238086 + 0 NA Intergenic Intergenic 34806 ENSMUSG00000103082.1 ENSMUSG00000103082 ENSMUST00000191710 Gm38124 TEC Interval_162723 chr9 8003332 8005136 + 0 NA promoter-TSS (ENSMUSG00000053110.13) protein_coding-promoter-TSS (ENSMUSG00000053110.13) -596 ENSMUSG00000110161.1 ENSMUSG00000110161 ENSMUST00000211167 Gm45494 bidirectional_promoter_lncRNA Interval_120837 chr4 150937356 150938363 + 0 NA intron (ENSMUSG00000028965.13, intron 7 of 7) protein_coding-intron (ENSMUSG00000028965.13, intron 7 of 7) 9860 ENSMUSG00000028965.13 ENSMUSG00000028965 ENSMUST00000126707 Tnfrsf9 protein_coding Interval_43143 chr13 24627294 24627501 + 0 NA intron (ENSMUSG00000036006.20, intron 1 of 12) protein_coding-intron (ENSMUSG00000036006.20, intron 1 of 13) -22630 ENSMUSG00000085603.3 ENSMUSG00000085603 ENSMUST00000127863 Gm11346 transcribed_processed_pseudogene Interval_37765 chr12 71839730 71840755 + 0 NA intron (ENSMUSG00000034574.10, intron 1 of 14) protein_coding-intron (ENSMUSG00000034574.10, intron 1 of 25) 7049 ENSMUSG00000098224.1 ENSMUSG00000098224 ENSMUST00000183329 Gm7985 processed_pseudogene Interval_26202 chr11 55057625 55058293 + 0 NA intron (ENSMUSG00000049588.13, intron 2 of 5) protein_coding-intron (ENSMUSG00000049588.13, intron 2 of 6) 20172 ENSMUSG00000049588.13 ENSMUSG00000049588 ENSMUST00000108880 Ccdc69 protein_coding Interval_140128 chr6 114645217 114645438 + 0 NA intron (ENSMUSG00000030314.16, intron 1 of 16) protein_coding-intron (ENSMUSG00000030314.16, intron 1 of 18) -37957 ENSMUSG00000030314.16 ENSMUSG00000030314 ENSMUST00000182934 Atg7 protein_coding Interval_68792 chr16 86725165 86725889 + 0 NA Intergenic Intergenic -33372 ENSMUSG00000116906.1 ENSMUSG00000116906 ENSMUST00000232053 Gm49572 processed_pseudogene Interval_52187 chr14 39471795 39474140 + 0 NA promoter-TSS (ENSMUSG00000041014.17) protein_coding-promoter-TSS (ENSMUSG00000041014.17) -301 ENSMUSG00000041014.17 ENSMUSG00000041014 ENSMUST00000176122 Nrg3 protein_coding Interval_40982 chr12 110419727 110420300 + 0 NA Intergenic Intergenic -27294 ENSMUSG00000017843.14 ENSMUSG00000017843 ENSMUST00000221074 Ppp2r5c protein_coding Interval_128179 chr5 111557916 111558362 + 0 NA Intergenic Intergenic -23422 ENSMUSG00000052848.7 ENSMUSG00000052848 ENSMUST00000198458 C130026L21Rik lincRNA Interval_4451 chr1 74275258 74275455 + 0 NA Intergenic Intergenic -3194 ENSMUSG00000064272.3 ENSMUSG00000064272 ENSMUST00000077985 Gpbar1 protein_coding Interval_32216 chr11 106222400 106223418 + 0 NA intron (ENSMUSG00000020705.6, intron 1 of 17) protein_coding-intron (ENSMUSG00000020705.6, intron 1 of 17) -14087 ENSMUSG00000020705.6 ENSMUSG00000020705 ENSMUST00000152860 Ddx42 protein_coding Interval_62996 chr15 98549720 98550222 + 0 NA intron (ENSMUSG00000011960.12, intron 2 of 5) protein_coding-intron (ENSMUSG00000011960.12, intron 5 of 8) 4714 ENSMUSG00000011960.12 ENSMUSG00000011960 ENSMUST00000130921 Ccnt1 protein_coding Interval_145075 chr7 29905969 29907043 + 0 NA promoter-TSS (ENSMUSG00000062040.14) protein_coding-promoter-TSS (ENSMUSG00000062040.14) -3 ENSMUSG00000098873.1 ENSMUSG00000098873 ENSMUST00000183679 Mir7668 miRNA Interval_112285 chr4 40016720 40017082 + 0 NA Intergenic Intergenic -35343 ENSMUSG00000088526.1 ENSMUSG00000088526 ENSMUST00000157901 Gm26087 snRNA Interval_153432 chr7 144738297 144739027 + 0 NA promoter-TSS (ENSMUSG00000031075.19) protein_coding-promoter-TSS (ENSMUSG00000031075.19) -96 ENSMUSG00000031075.19 ENSMUSG00000031075 ENSMUST00000131731 Ano1 protein_coding Interval_60998 chr15 78597489 78598354 + 0 NA intron (ENSMUSG00000018008.8, intron 1 of 3) protein_coding-intron (ENSMUSG00000018008.8, intron 1 of 12) 868 ENSMUSG00000018008.8 ENSMUSG00000018008 ENSMUST00000230583 Cyth4 protein_coding Interval_29353 chr11 83402700 83403214 + 0 NA TTS (ENSMUSG00000035152.14) protein_coding-TTS (ENSMUSG00000035152.14) -6731 ENSMUSG00000020684.14 ENSMUSG00000020684 ENSMUST00000164425 Rasl10b protein_coding Interval_140429 chr6 118018916 118019901 + 0 NA intron (ENSMUSG00000030134.11, intron 1 of 12) protein_coding-intron (ENSMUSG00000030134.11, intron 1 of 12) 22201 ENSMUSG00000082791.3 ENSMUSG00000082791 ENSMUST00000118257 Gm4875 processed_pseudogene Interval_93697 chr2 75964236 75965275 + 0 NA Intergenic Intergenic 13415 ENSMUSG00000075272.4 ENSMUSG00000075272 ENSMUST00000099995 Ttc30a2 protein_coding Interval_98906 chr2 155929254 155930685 + 0 NA promoter-TSS (ENSMUSG00000005882.18) protein_coding-promoter-TSS (ENSMUSG00000005882.18) 307 ENSMUSG00000005882.18 ENSMUSG00000005882 ENSMUST00000142655 Uqcc1 protein_coding Interval_50739 chr14 18777365 18778713 + 0 NA intron (ENSMUSG00000058317.12, intron 3 of 4) protein_coding-intron (ENSMUSG00000058317.12, intron 2 of 4) -36130 ENSMUSG00000077689.1 ENSMUSG00000077689 ENSMUST00000104501 Gm22499 snoRNA Interval_14694 chr10 39102287 39102633 + 0 NA intron (ENSMUSG00000019846.11, intron 34 of 37) protein_coding-intron (ENSMUSG00000019846.11, intron 34 of 37) -3321 ENSMUSG00000019846.11 ENSMUSG00000019846 ENSMUST00000163036 Lama4 protein_coding Interval_76745 chr17 83792199 83793413 + 0 NA TTS (ENSMUSG00000055817.18) protein_coding-TTS (ENSMUSG00000055817.18) 53983 ENSMUSG00000000673.9 ENSMUSG00000000673 ENSMUST00000234312 Haao protein_coding Interval_131708 chr5 139437316 139438047 + 0 NA intron (ENSMUSG00000053553.11, intron 1 of 2) protein_coding-intron (ENSMUSG00000053553.11, intron 2 of 4) -5918 ENSMUSG00000095016.1 ENSMUSG00000095016 ENSMUST00000177923 Gm26285 snRNA Interval_24587 chr11 34832848 34834133 + 0 NA exon (ENSMUSG00000069910.2, exon 1 of 12) protein_coding-exon (ENSMUSG00000069910.2, exon 1 of 12) 8864 ENSMUSG00000077543.1 ENSMUSG00000077543 ENSMUST00000104355 Gm22022 snoRNA Interval_140252 chr6 115808269 115810048 + 0 NA promoter-TSS (ENSMUSG00000057841.5) protein_coding-promoter-TSS (ENSMUSG00000057841.5) -810 ENSMUSG00000057841.5 ENSMUSG00000057841 ENSMUST00000203816 Rpl32 protein_coding Interval_96885 chr2 129217556 129218497 + 0 NA promoter-TSS (ENSMUSG00000056738.11) lincRNA-promoter-TSS (ENSMUSG00000056738.11) -1002 ENSMUSG00000056738.11 ENSMUSG00000056738 ENSMUST00000148548 A730036I17Rik lincRNA Interval_97835 chr2 144348143 144349304 + 0 NA Intergenic Intergenic -7194 ENSMUSG00000081450.1 ENSMUSG00000081450 ENSMUST00000119409 Gm11700 processed_pseudogene Interval_117864 chr4 126714119 126714305 + 0 NA Intergenic Intergenic 22028 ENSMUSG00000042477.7 ENSMUSG00000042477 ENSMUST00000048194 Tfap2e protein_coding Interval_37079 chr12 57515596 57516654 + 0 NA Intergenic Intergenic 4499 ENSMUSG00000084793.1 ENSMUSG00000084793 ENSMUST00000146126 Gm2568 processed_pseudogene Interval_173532 chrX 98909912 98910804 + 0 NA Intergenic Intergenic -19749 ENSMUSG00000031214.13 ENSMUSG00000031214 ENSMUST00000156634 Ophn1 protein_coding Interval_109264 chr3 138481692 138482523 + 0 NA promoter-TSS (ENSMUSG00000005813.12) protein_coding-promoter-TSS (ENSMUSG00000005813.12) -6922 ENSMUSG00000005813.12 ENSMUSG00000005813 ENSMUST00000198492 Metap1 protein_coding Interval_38541 chr12 79995439 79996088 + 0 NA Intergenic Intergenic -15912 ENSMUSG00000112292.1 ENSMUSG00000112292 ENSMUST00000219732 Gm8275 processed_pseudogene Interval_53717 chr14 61134049 61135323 + 0 NA Intergenic Intergenic -58787 ENSMUSG00000048279.19 ENSMUSG00000048279 ENSMUST00000229692 Sacs protein_coding Interval_123024 chr5 28586917 28587131 + 0 NA intron (ENSMUSG00000097726.7, intron 2 of 6) antisense-intron (ENSMUSG00000097726.7, intron 2 of 6) 9751 ENSMUSG00000104587.1 ENSMUSG00000104587 ENSMUST00000197020 Gm43161 TEC Interval_26758 chr11 60259098 60259818 + 0 NA intron (ENSMUSG00000000538.18, intron 6 of 8) protein_coding-intron (ENSMUSG00000000538.18, intron 6 of 12) 18648 ENSMUSG00000085132.1 ENSMUSG00000085132 ENSMUST00000139025 Gm12265 antisense Interval_7654 chr1 132843311 132844498 + 0 NA Intergenic Intergenic -29556 ENSMUSG00000088911.1 ENSMUSG00000088911 ENSMUST00000158286 Gm22609 snoRNA Interval_132677 chr5 147107575 147108908 + 0 NA intron (ENSMUSG00000029642.11, intron 1 of 1) protein_coding-intron (ENSMUSG00000029642.11, intron 2 of 2) -7188 ENSMUSG00000083988.1 ENSMUSG00000083988 ENSMUST00000120308 Rps10-ps4 processed_pseudogene Interval_121971 chr5 12804674 12804886 + 0 NA Intergenic Intergenic -134052 ENSMUSG00000105237.1 ENSMUSG00000105237 ENSMUST00000197223 Gm42580 processed_pseudogene Interval_174610 chrX 160054700 160055016 + 0 NA intron (ENSMUSG00000031303.8, intron 6 of 28) protein_coding-intron (ENSMUSG00000031303.8, intron 6 of 28) 18537 ENSMUSG00000082810.1 ENSMUSG00000082810 ENSMUST00000121310 Gm8682 processed_pseudogene Interval_161727 chr8 122376163 122377281 + 0 NA promoter-TSS (ENSMUSG00000017478.15) protein_coding-promoter-TSS (ENSMUSG00000017478.15) 74 ENSMUSG00000017478.15 ENSMUSG00000017478 ENSMUST00000177049 Zc3h18 protein_coding Interval_127875 chr5 108476833 108478025 + 0 NA intron (ENSMUSG00000033623.13, intron 2 of 2) protein_coding-intron (ENSMUSG00000033623.13, intron 5 of 10) -8791 ENSMUSG00000033623.13 ENSMUSG00000033623 ENSMUST00000151897 Pcgf3 protein_coding Interval_115178 chr4 93476717 93477167 + 0 NA intron (ENSMUSG00000084833.1, intron 2 of 2) lincRNA-intron (ENSMUSG00000084833.1, intron 2 of 2) 68335 ENSMUSG00000064850.1 ENSMUSG00000064850 ENSMUST00000082916 Gm23443 snoRNA Interval_86755 chr19 43642799 43643334 + 0 NA Intergenic Intergenic -2684 ENSMUSG00000118236.1 ENSMUSG00000118236 ENSMUST00000237632 Gm34922 lincRNA Interval_127985 chr5 110094128 110095007 + 0 NA promoter-TSS (ENSMUSG00000109771.1) protein_coding-promoter-TSS (ENSMUSG00000109771.1) -166 ENSMUSG00000109771.1 ENSMUSG00000109771 ENSMUST00000211397 Gm35315 protein_coding Interval_71136 chr17 19482257 19482644 + 0 NA intron (ENSMUSG00000116984.1, intron 6 of 7) lincRNA-intron (ENSMUSG00000116984.1, intron 6 of 7) -22350 ENSMUSG00000091859.2 ENSMUSG00000091859 ENSMUST00000231465 Vmn2r100 protein_coding Interval_5139 chr1 85977358 85978172 + 0 NA intron (ENSMUSG00000100108.1, intron 1 of 3) lincRNA-intron (ENSMUSG00000100108.1, intron 1 of 3) 9152 ENSMUSG00000100108.1 ENSMUSG00000100108 ENSMUST00000186560 Gm28100 lincRNA Interval_150390 chr7 110096903 110098386 + 0 NA intron (ENSMUSG00000101585.6, intron 2 of 3) antisense-intron (ENSMUSG00000101585.6, intron 2 of 3) -22346 ENSMUSG00000109904.1 ENSMUSG00000109904 ENSMUST00000210940 Gm45819 TEC Interval_130271 chr5 125339132 125341499 + 0 NA promoter-TSS (ENSMUSG00000037936.15) protein_coding-promoter-TSS (ENSMUSG00000037936.15) -12596 ENSMUSG00000037936.15 ENSMUSG00000037936 ENSMUST00000197310 Scarb1 protein_coding Interval_51474 chr14 27886112 27887069 + 0 NA intron (ENSMUSG00000040640.11, intron 3 of 4) protein_coding-intron (ENSMUSG00000040640.11, intron 4 of 15) -10373 ENSMUSG00000109849.1 ENSMUSG00000109849 ENSMUST00000211470 Gm45645 antisense Interval_101904 chr3 10759499 10760392 + 0 NA Intergenic Intergenic -5517 ENSMUSG00000104185.1 ENSMUSG00000104185 ENSMUST00000193047 Gm18692 processed_pseudogene Interval_129954 chr5 123284962 123286486 + 0 NA intron (ENSMUSG00000029442.18, intron 5 of 11) protein_coding-intron (ENSMUSG00000029442.18, intron 10 of 21) 7596 ENSMUSG00000029442.18 ENSMUSG00000029442 ENSMUST00000125979 Wdr66 protein_coding Interval_80904 chr18 50034942 50035797 + 0 NA intron (ENSMUSG00000062210.13, intron 1 of 1) protein_coding-intron (ENSMUSG00000062210.13, intron 1 of 1) -11371 ENSMUSG00000062210.13 ENSMUSG00000062210 ENSMUST00000148159 Tnfaip8 protein_coding Interval_35468 chr12 22827025 22827227 + 0 NA Intergenic Intergenic 6235 ENSMUSG00000114139.1 ENSMUSG00000114139 ENSMUST00000222057 Gm20336 unprocessed_pseudogene Interval_17912 chr10 80784558 80784878 + 0 NA promoter-TSS (ENSMUSG00000061589.14) protein_coding-promoter-TSS (ENSMUSG00000061589.14) -446 ENSMUSG00000061589.14 ENSMUSG00000061589 ENSMUST00000138505 Dot1l protein_coding Interval_17932 chr10 80888037 80888509 + 0 NA intron (ENSMUSG00000059406.8, intron 8 of 18) protein_coding-intron (ENSMUSG00000059406.8, intron 7 of 17) 12512 ENSMUSG00000020219.7 ENSMUSG00000020219 ENSMUST00000218149 Timm13 protein_coding Interval_150551 chr7 112353716 112354612 + 0 NA TTS (ENSMUSG00000038244.14) protein_coding-TTS (ENSMUSG00000038244.14) 4770 ENSMUSG00000038244.14 ENSMUSG00000038244 ENSMUST00000140202 Mical2 protein_coding Interval_116681 chr4 116633405 116634013 + 0 NA Intergenic Intergenic 15765 ENSMUSG00000028692.14 ENSMUSG00000028692 ENSMUST00000128059 Akr1a1 protein_coding Interval_85450 chr19 26621181 26621783 + 0 NA intron (ENSMUSG00000093628.1, intron 2 of 2) protein_coding-intron (ENSMUSG00000024921.17, intron 2 of 32) 1928 ENSMUSG00000093628.1 ENSMUSG00000093628 ENSMUST00000177453 Gm20616 antisense Interval_35723 chr12 28653357 28654525 + 0 NA exon (ENSMUSG00000020630.9, exon 1 of 6) protein_coding-exon (ENSMUSG00000020630.9, exon 1 of 6) 4317 ENSMUSG00000020630.9 ENSMUSG00000020630 ENSMUST00000221496 Rnaseh1 protein_coding Interval_3600 chr1 59912476 59913965 + 0 NA exon (ENSMUSG00000041040.12, exon 1 of 8) protein_coding-exon (ENSMUSG00000041040.12, exon 1 of 8) -16468 ENSMUSG00000103696.1 ENSMUSG00000103696 ENSMUST00000191628 Gm37531 TEC Interval_78006 chr18 6632420 6632701 + 0 NA intron (ENSMUSG00000039540.9, intron 6 of 7) protein_coding-intron (ENSMUSG00000039540.9, intron 8 of 9) 28931 ENSMUSG00000039540.9 ENSMUSG00000039540 ENSMUST00000234337 4921524L21Rik protein_coding Interval_19769 chr10 108610208 108611351 + 0 NA intron (ENSMUSG00000035864.14, intron 9 of 11) protein_coding-intron (ENSMUSG00000035864.14, intron 8 of 10) 89381 ENSMUSG00000112039.1 ENSMUSG00000112039 ENSMUST00000218023 Gm5136 protein_coding Interval_94528 chr2 91958966 91959301 + 0 NA intron (ENSMUSG00000040479.12, intron 1 of 30) protein_coding-intron (ENSMUSG00000040479.12, intron 1 of 30) 6467 ENSMUSG00000040479.12 ENSMUSG00000040479 ENSMUST00000126473 Dgkz protein_coding Interval_27493 chr11 68218648 68219365 + 0 NA intron (ENSMUSG00000020902.12, intron 7 of 7) protein_coding-intron (ENSMUSG00000020902.12, intron 6 of 6) -1886 ENSMUSG00000099174.1 ENSMUSG00000099174 ENSMUST00000183592 Mir6406 miRNA Interval_23867 chr11 27332476 27332764 + 0 NA Intergenic Intergenic -13642 ENSMUSG00000088438.1 ENSMUSG00000088438 ENSMUST00000157813 Gm25387 snoRNA Interval_162232 chr8 126266943 126267779 + 0 NA intron (ENSMUSG00000057060.8, intron 1 of 5) protein_coding-intron (ENSMUSG00000057060.8, intron 1 of 5) 128366 ENSMUSG00000057060.8 ENSMUSG00000057060 ENSMUST00000108759 Slc35f3 protein_coding Interval_159924 chr8 105217983 105219119 + 0 NA TTS (ENSMUSG00000031885.14) protein_coding-TTS (ENSMUSG00000031885.14) -6655 ENSMUSG00000031889.9 ENSMUSG00000031889 ENSMUST00000133035 D230025D16Rik protein_coding Interval_58341 chr15 32718436 32719203 + 0 NA Intergenic Intergenic 54333 ENSMUSG00000115749.1 ENSMUSG00000115749 ENSMUST00000227504 Gm41289 lincRNA Interval_144998 chr7 29341103 29343450 + 0 NA promoter-TSS (ENSMUSG00000030583.16) protein_coding-promoter-TSS (ENSMUSG00000030583.16) -22874 ENSMUSG00000109351.1 ENSMUSG00000109351 ENSMUST00000207245 Gm44632 antisense Interval_42174 chr13 9494339 9495332 + 0 NA exon (ENSMUSG00000048264.16, exon 3 of 36) protein_coding-exon (ENSMUSG00000048264.16, exon 3 of 36) 48935 ENSMUSG00000112948.1 ENSMUSG00000112948 ENSMUST00000223468 Gm48871 TEC Interval_54949 chr14 76442038 76442595 + 0 NA TTS (ENSMUSG00000022010.19) protein_coding-TTS (ENSMUSG00000022010.19) 23488 ENSMUSG00000022010.19 ENSMUSG00000022010 ENSMUST00000133224 Tsc22d1 protein_coding Interval_139246 chr6 97523221 97523582 + 0 NA intron (ENSMUSG00000030064.16, intron 2 of 7) protein_coding-intron (ENSMUSG00000030064.16, intron 2 of 23) 24166 ENSMUSG00000064724.1 ENSMUSG00000064724 ENSMUST00000082790 Gm25852 snoRNA Interval_94489 chr2 91628309 91628721 + 0 NA intron (ENSMUSG00000027249.15, intron 11 of 13) protein_coding-intron (ENSMUSG00000027249.15, intron 11 of 13) 7880 ENSMUSG00000027249.15 ENSMUSG00000027249 ENSMUST00000153182 F2 protein_coding Interval_23522 chr11 23105256 23106185 + 0 NA Intergenic Intergenic 37722 ENSMUSG00000085665.1 ENSMUSG00000085665 ENSMUST00000128996 Gm12059 processed_transcript Interval_147209 chr7 64538740 64539892 + 0 NA intron (ENSMUSG00000030519.14, intron 1 of 2) protein_coding-intron (ENSMUSG00000030519.14, intron 1 of 14) 9891 ENSMUSG00000108721.1 ENSMUSG00000108721 ENSMUST00000206978 Gm44721 TEC Interval_17572 chr10 77848987 77849389 + 0 NA intron (ENSMUSG00000069581.12, intron 2 of 11) protein_coding-intron (ENSMUSG00000069581.12, intron 2 of 11) 2385 ENSMUSG00000112653.1 ENSMUSG00000112653 ENSMUST00000218749 Gm36176 protein_coding Interval_151284 chr7 120667856 120668318 + 0 NA intron (ENSMUSG00000030887.4, intron 2 of 3) protein_coding-intron (ENSMUSG00000030887.4, intron 2 of 3) -2209 ENSMUSG00000108935.1 ENSMUSG00000108935 ENSMUST00000208075 4930588G17Rik antisense Interval_118853 chr4 134067569 134068500 + 0 NA promoter-TSS (ENSMUSG00000012123.17) protein_coding-promoter-TSS (ENSMUSG00000012123.17) 7219 ENSMUSG00000012123.17 ENSMUSG00000012123 ENSMUST00000143295 Crybg2 protein_coding Interval_172211 chrX 9474633 9476056 + 0 NA intron (ENSMUSG00000015340.10, intron 1 of 4) protein_coding-intron (ENSMUSG00000015340.10, intron 1 of 4) 12427 ENSMUSG00000015340.10 ENSMUSG00000015340 ENSMUST00000131591 Cybb protein_coding Interval_16305 chr10 62087896 62088098 + 0 NA Intergenic Intergenic 16874 ENSMUSG00000046687.6 ENSMUSG00000046687 ENSMUST00000053865 Gm5424 processed_pseudogene Interval_30215 chr11 90686822 90688234 + 0 NA promoter-TSS (ENSMUSG00000020541.12) protein_coding-promoter-TSS (ENSMUSG00000020541.12) 60 ENSMUSG00000020541.12 ENSMUSG00000020541 ENSMUST00000131055 Tom1l1 protein_coding Interval_47552 chr13 88136894 88138191 + 0 NA Intergenic Intergenic 47914 ENSMUSG00000098213.1 ENSMUSG00000098213 ENSMUST00000183033 Gm27044 processed_pseudogene Interval_90599 chr2 31381082 31381866 + 0 NA intron (ENSMUSG00000055632.18, intron 25 of 97) protein_coding-intron (ENSMUSG00000055632.18, intron 25 of 97) 67059 ENSMUSG00000055632.18 ENSMUSG00000055632 ENSMUST00000141294 Hmcn2 protein_coding Interval_170346 chr9 107307750 107308137 + 0 NA Intergenic Intergenic -6105 ENSMUSG00000090570.1 ENSMUSG00000090570 ENSMUST00000163196 Gm17041 antisense Interval_102565 chr3 27859175 27859447 + 0 NA Intergenic Intergenic -8802 ENSMUSG00000088772.1 ENSMUSG00000088772 ENSMUST00000158147 Gm26040 snoRNA Interval_115244 chr4 94764225 94764476 + 0 NA intron (ENSMUSG00000006386.15, intron 1 of 22) protein_coding-intron (ENSMUSG00000006386.15, intron 1 of 22) -40493 ENSMUSG00000006386.15 ENSMUSG00000006386 ENSMUST00000131958 Tek protein_coding Interval_4526 chr1 74794207 74795274 + 0 NA intron (ENSMUSG00000026167.14, intron 1 of 1) protein_coding-intron (ENSMUSG00000026167.14, intron 2 of 3) 1377 ENSMUSG00000026167.14 ENSMUSG00000026167 ENSMUST00000187238 Wnt10a protein_coding Interval_147210 chr7 64551956 64553150 + 0 NA intron (ENSMUSG00000030519.14, intron 1 of 2) protein_coding-intron (ENSMUSG00000030519.14, intron 1 of 14) 23128 ENSMUSG00000108721.1 ENSMUSG00000108721 ENSMUST00000206978 Gm44721 TEC Interval_86035 chr19 35179976 35180593 + 0 NA Intergenic Intergenic -22951 ENSMUSG00000089087.1 ENSMUSG00000089087 ENSMUST00000158462 Gm24006 snoRNA Interval_112868 chr4 45647184 45647708 + 0 NA Intergenic Intergenic 7702 ENSMUSG00000085980.2 ENSMUSG00000085980 ENSMUST00000211200 Gm12408 lincRNA Interval_159939 chr8 105289020 105291180 + 0 NA promoter-TSS (ENSMUSG00000014837.15) protein_coding-promoter-TSS (ENSMUSG00000014837.15) 111 ENSMUSG00000110611.1 ENSMUSG00000110611 ENSMUST00000212288 Gm20163 antisense Interval_153780 chr8 8484634 8485046 + 0 NA promoter-TSS (ENSMUSG00000109127.1) lincRNA-promoter-TSS (ENSMUSG00000109127.1) -119 ENSMUSG00000109127.1 ENSMUSG00000109127 ENSMUST00000208460 Gm31135 lincRNA Interval_72536 chr17 30559513 30560215 + 0 NA intron (ENSMUSG00000118341.1, intron 1 of 6) protein_coding-intron (ENSMUSG00000062202.14, intron 1 of 11) -16604 ENSMUSG00000117725.1 ENSMUSG00000117725 ENSMUST00000237645 Gm50240 antisense Interval_96795 chr2 128334476 128334680 + 0 NA promoter-TSS (ENSMUSG00000074813.14) lincRNA-promoter-TSS (ENSMUSG00000074813.14) -89076 ENSMUSG00000079053.3 ENSMUSG00000079053 ENSMUST00000131961 Gm14010 lincRNA Interval_105954 chr3 90284345 90284528 + 0 NA Intergenic Intergenic 9547 ENSMUSG00000105350.1 ENSMUSG00000105350 ENSMUST00000200437 4930537H20Rik antisense Interval_114616 chr4 83239105 83239618 + 0 NA TTS (ENSMUSG00000038172.14) protein_coding-TTS (ENSMUSG00000038172.14) 45373 ENSMUSG00000083245.1 ENSMUSG00000083245 ENSMUST00000117732 Gm11185 processed_pseudogene Interval_104671 chr3 69282956 69283563 + 0 NA Intergenic Intergenic 37326 ENSMUSG00000091315.1 ENSMUSG00000091315 ENSMUST00000164501 Gm17214 processed_pseudogene Interval_76683 chr17 83466718 83467912 + 0 NA intron (ENSMUSG00000032624.16, intron 4 of 6) protein_coding-intron (ENSMUSG00000032624.16, intron 17 of 20) 11014 ENSMUSG00000032624.16 ENSMUSG00000032624 ENSMUST00000235121 Eml4 protein_coding Interval_30249 chr11 91926542 91927387 + 0 NA Intergenic Intergenic -95574 ENSMUSG00000081630.1 ENSMUSG00000081630 ENSMUST00000120660 Gm11498 processed_pseudogene Interval_11774 chr1 185341038 185341279 + 0 NA intron (ENSMUSG00000026617.16, intron 2 of 9) protein_coding-intron (ENSMUSG00000026617.16, intron 2 of 8) 8986 ENSMUSG00000026617.16 ENSMUSG00000026617 ENSMUST00000137757 Bpnt1 protein_coding Interval_164655 chr9 40350500 40350908 + 0 NA intron (ENSMUSG00000040111.17, intron 2 of 20) protein_coding-intron (ENSMUSG00000040111.17, intron 2 of 19) -7766 ENSMUSG00000111271.1 ENSMUSG00000111271 ENSMUST00000217414 Gm48127 sense_intronic Interval_54557 chr14 70668674 70668967 + 0 NA intron (ENSMUSG00000022100.14, intron 25 of 27) protein_coding-intron (ENSMUSG00000022100.14, intron 25 of 27) -5630 ENSMUSG00000115387.1 ENSMUSG00000115387 ENSMUST00000228317 Gm49244 processed_pseudogene Interval_117263 chr4 121113640 121113967 + 0 NA TTS (ENSMUSG00000081423.1) processed_pseudogene-TTS (ENSMUSG00000081423.1) 1502 ENSMUSG00000081423.1 ENSMUSG00000081423 ENSMUST00000121696 Gm12882 processed_pseudogene Interval_127105 chr5 100333685 100335153 + 0 NA intron (ENSMUSG00000085915.1, intron 1 of 4) unprocessed_pseudogene-intron (ENSMUSG00000085915.1, intron 1 of 4) 20700 ENSMUSG00000085915.1 ENSMUSG00000085915 ENSMUST00000150506 Gm8091 unprocessed_pseudogene Interval_133499 chr6 5864354 5864572 + 0 NA intron (ENSMUSG00000029757.16, intron 6 of 16) protein_coding-intron (ENSMUSG00000029757.16, intron 5 of 15) 107044 ENSMUSG00000029757.16 ENSMUSG00000029757 ENSMUST00000203520 Dync1i1 protein_coding Interval_36739 chr12 52818581 52819236 + 0 NA intron (ENSMUSG00000061603.8, intron 1 of 11) protein_coding-intron (ENSMUSG00000061603.8, intron 2 of 13) 23072 ENSMUSG00000061603.8 ENSMUSG00000061603 ENSMUST00000219786 Akap6 protein_coding Interval_120427 chr4 148557355 148559668 + 0 NA promoter-TSS (ENSMUSG00000017264.16) protein_coding-promoter-TSS (ENSMUSG00000017264.16) 2814 ENSMUSG00000088625.1 ENSMUSG00000088625 ENSMUST00000158000 Gm23318 snRNA Interval_9601 chr1 160108141 160108389 + 0 NA intron (ENSMUSG00000026725.17, intron 11 of 17) protein_coding-intron (ENSMUSG00000026725.17, intron 15 of 21) -30323 ENSMUSG00000026729.9 ENSMUSG00000026729 ENSMUST00000169600 4930562F07Rik lincRNA Interval_172284 chrX 12312713 12312970 + 0 NA Intergenic Intergenic 42155 ENSMUSG00000087591.7 ENSMUSG00000087591 ENSMUST00000137281 Gm14635 lincRNA Interval_161567 chr8 121260886 121261105 + 0 NA intron (ENSMUSG00000097384.1, intron 1 of 1) protein_coding-intron (ENSMUSG00000092329.1, intron 1 of 15) -57393 ENSMUSG00000097097.2 ENSMUSG00000097097 ENSMUST00000212635 5033426O07Rik lincRNA Interval_125143 chr5 64832138 64832371 + 0 NA exon (ENSMUSG00000029178.14, exon 6 of 6) protein_coding-exon (ENSMUSG00000029178.14, exon 6 of 6) 28240 ENSMUSG00000106205.1 ENSMUSG00000106205 ENSMUST00000198074 C230096K16Rik TEC Interval_59462 chr15 53322172 53322827 + 0 NA intron (ENSMUSG00000061731.9, intron 1 of 10) protein_coding-intron (ENSMUSG00000061731.9, intron 1 of 10) -61420 ENSMUSG00000087805.2 ENSMUSG00000087805 ENSMUST00000157180 Gm27926 snRNA Interval_82310 chr18 70547865 70548169 + 0 NA Intergenic Intergenic 31231 ENSMUSG00000098721.1 ENSMUSG00000098721 ENSMUST00000184246 Mir6357 miRNA Interval_79187 chr18 25532339 25533411 + 0 NA intron (ENSMUSG00000024268.16, intron 3 of 11) protein_coding-intron (ENSMUSG00000024268.16, intron 3 of 12) -31636 ENSMUSG00000024268.16 ENSMUSG00000024268 ENSMUST00000224143 Celf4 protein_coding Interval_83206 chr18 82763913 82765484 + 0 NA Intergenic Intergenic -5657 ENSMUSG00000101773.1 ENSMUSG00000101773 ENSMUST00000188435 2210420H20Rik lincRNA Interval_169964 chr9 103286302 103287211 + 0 NA intron (ENSMUSG00000033688.10, intron 1 of 1) protein_coding-intron (ENSMUSG00000033688.10, intron 1 of 16) -20531 ENSMUSG00000033688.10 ENSMUSG00000033688 ENSMUST00000142540 1300017J02Rik protein_coding Interval_57277 chr15 8376766 8377967 + 0 NA intron (ENSMUSG00000022141.7, intron 1 of 46) protein_coding-intron (ENSMUSG00000022141.7, intron 1 of 46) 67097 ENSMUSG00000022141.7 ENSMUSG00000022141 ENSMUST00000052965 Nipbl protein_coding Interval_24473 chr11 33527236 33528596 + 0 NA Intergenic Intergenic 51043 ENSMUSG00000020159.8 ENSMUSG00000020159 ENSMUST00000135350 Gabrp protein_coding Interval_131453 chr5 137333243 137334175 + 0 NA promoter-TSS (ENSMUSG00000037344.14) protein_coding-promoter-TSS (ENSMUSG00000037344.14) -699 ENSMUSG00000037344.14 ENSMUSG00000037344 ENSMUST00000156646 Slc12a9 protein_coding Interval_11453 chr1 181989425 181991296 + 0 NA promoter-TSS (ENSMUSG00000102950.1) TEC-promoter-TSS (ENSMUSG00000102950.1) -156 ENSMUSG00000102950.1 ENSMUSG00000102950 ENSMUST00000192441 Gm37018 TEC Interval_84961 chr19 20362120 20363511 + 0 NA intron (ENSMUSG00000094732.2, intron 2 of 7) lincRNA-intron (ENSMUSG00000094732.2, intron 1 of 7) 27858 ENSMUSG00000024659.15 ENSMUSG00000024659 ENSMUST00000164587 Anxa1 protein_coding Interval_57608 chr15 12805875 12806363 + 0 NA promoter-TSS (ENSMUSG00000115024.1) processed_pseudogene-promoter-TSS (ENSMUSG00000115024.1) -946 ENSMUSG00000115024.1 ENSMUSG00000115024 ENSMUST00000228527 Gm49277 processed_pseudogene Interval_66282 chr16 32846920 32847649 + 0 NA exon (ENSMUSG00000035629.19, exon 5 of 19) protein_coding-exon (ENSMUSG00000035629.19, exon 5 of 19) -10713 ENSMUSG00000035629.19 ENSMUSG00000035629 ENSMUST00000149621 Rubcn protein_coding Interval_139741 chr6 108272036 108273915 + 0 NA intron (ENSMUSG00000030102.11, intron 1 of 22) protein_coding-intron (ENSMUSG00000030102.11, intron 4 of 61) -87419 ENSMUSG00000030101.15 ENSMUSG00000030101 ENSMUST00000171697 Sumf1 protein_coding Interval_12052 chr1 189141876 189143232 + 0 NA Intergenic Intergenic -62850 ENSMUSG00000104464.1 ENSMUSG00000104464 ENSMUST00000192327 Gm18698 processed_pseudogene Interval_91429 chr2 38755202 38755447 + 0 NA intron (ENSMUSG00000063972.13, intron 1 of 2) protein_coding-intron (ENSMUSG00000063972.13, intron 4 of 10) 3362 ENSMUSG00000108124.1 ENSMUSG00000108124 ENSMUST00000203508 Gm44146 TEC Interval_42050 chr13 6888730 6890000 + 0 NA Intergenic Intergenic 36486 ENSMUSG00000113932.1 ENSMUSG00000113932 ENSMUST00000220700 2900024D18Rik TEC Interval_16366 chr10 62507559 62509325 + 0 NA promoter-TSS (ENSMUSG00000020077.14) protein_coding-promoter-TSS (ENSMUSG00000020077.14) 18983 ENSMUSG00000020077.14 ENSMUSG00000020077 ENSMUST00000162956 Srgn protein_coding Interval_104564 chr3 68252158 68252986 + 0 NA intron (ENSMUSG00000027777.15, intron 1 of 6) protein_coding-intron (ENSMUSG00000027777.15, intron 1 of 7) -80624 ENSMUSG00000102846.1 ENSMUSG00000102846 ENSMUST00000193165 Gm10292 processed_pseudogene Interval_102462 chr3 26967599 26967890 + 0 NA intron (ENSMUSG00000039335.11, intron 10 of 10) protein_coding-intron (ENSMUSG00000039335.11, intron 10 of 10) -45020 ENSMUSG00000103712.1 ENSMUSG00000103712 ENSMUST00000194574 Gm37659 processed_pseudogene Interval_123001 chr5 28316349 28317634 + 0 NA promoter-TSS (ENSMUSG00000048271.14) protein_coding-promoter-TSS (ENSMUSG00000048271.14) -71185 ENSMUSG00000044681.19 ENSMUSG00000044681 ENSMUST00000141196 Cnpy1 protein_coding Interval_133518 chr6 6115976 6116187 + 0 NA intron (ENSMUSG00000015112.15, intron 3 of 3) protein_coding-intron (ENSMUSG00000015112.15, intron 6 of 17) 57870 ENSMUSG00000015112.15 ENSMUSG00000015112 ENSMUST00000177698 Slc25a13 protein_coding Interval_64036 chr16 5926783 5927422 + 0 NA intron (ENSMUSG00000008658.16, intron 1 of 11) protein_coding-intron (ENSMUSG00000008658.16, intron 1 of 11) -48483 ENSMUSG00000101481.1 ENSMUSG00000101481 ENSMUST00000190515 1700123O21Rik sense_intronic Interval_131852 chr5 140367886 140368678 + 0 NA intron (ENSMUSG00000029560.12, intron 1 of 10) protein_coding-intron (ENSMUSG00000029560.12, intron 1 of 10) -1172 ENSMUSG00000029560.12 ENSMUSG00000029560 ENSMUST00000196020 Snx8 protein_coding Interval_85497 chr19 27537152 27537365 + 0 NA Intergenic Intergenic 24750 ENSMUSG00000118072.1 ENSMUSG00000118072 ENSMUST00000235994 Gm50101 processed_pseudogene Interval_14186 chr10 28492504 28494492 + 0 NA intron (ENSMUSG00000019889.10, intron 12 of 14) protein_coding-intron (ENSMUSG00000019889.10, intron 12 of 31) -93495 ENSMUSG00000019889.10 ENSMUSG00000019889 ENSMUST00000220404 Ptprk protein_coding Interval_21888 chr11 4999441 4999764 + 0 NA intron (ENSMUSG00000009090.17, intron 1 of 2) protein_coding-intron (ENSMUSG00000009090.17, intron 1 of 20) -31375 ENSMUSG00000009090.17 ENSMUSG00000009090 ENSMUST00000133007 Ap1b1 protein_coding Interval_172075 chrX 6171991 6173221 + 0 NA exon (ENSMUSG00000073293.4, exon 1 of 2) protein_coding-exon (ENSMUSG00000073293.4, exon 1 of 2) 409 ENSMUSG00000073293.4 ENSMUSG00000073293 ENSMUST00000103006 Nudt10 protein_coding Interval_77752 chr17 94884197 94884453 + 0 NA Intergenic Intergenic -14337 ENSMUSG00000065658.1 ENSMUSG00000065658 ENSMUST00000083724 Gm23102 snRNA Interval_144108 chr7 19458019 19459257 + 0 NA exon (ENSMUSG00000030397.11, exon 1 of 17) protein_coding-exon (ENSMUSG00000030397.11, exon 1 of 17) 183 ENSMUSG00000030397.11 ENSMUSG00000030397 ENSMUST00000209011 Mark4 protein_coding Interval_98303 chr2 150895966 150896229 + 0 NA intron (ENSMUSG00000032046.15, intron 1 of 12) protein_coding-intron (ENSMUSG00000032046.15, intron 1 of 12) -9303 ENSMUSG00000027454.10 ENSMUSG00000027454 ENSMUST00000123217 Gins1 protein_coding Interval_150587 chr7 112659914 112661052 + 0 NA intron (ENSMUSG00000085945.3, intron 2 of 3) bidirectional_promoter_lncRNA-intron (ENSMUSG00000085945.3, intron 2 of 3) 7701 ENSMUSG00000109611.1 ENSMUSG00000109611 ENSMUST00000211452 Gm45473 processed_pseudogene Interval_125491 chr5 67619743 67620089 + 0 NA TTS (ENSMUSG00000037685.15) protein_coding-TTS (ENSMUSG00000037685.15) 11947 ENSMUSG00000050010.8 ENSMUSG00000050010 ENSMUST00000142843 Shisa3 protein_coding Interval_155402 chr8 33318263 33318499 + 0 NA intron (ENSMUSG00000031583.13, intron 6 of 27) protein_coding-intron (ENSMUSG00000031583.13, intron 12 of 33) 12169 ENSMUSG00000031583.13 ENSMUSG00000031583 ENSMUST00000209293 Wrn protein_coding Interval_14209 chr10 28894183 28894598 + 0 NA intron (ENSMUSG00000090126.1, intron 1 of 1) transcribed_processed_pseudogene-intron (ENSMUSG00000090126.1, intron 1 of 1) -26107 ENSMUSG00000111991.1 ENSMUSG00000111991 ENSMUST00000219942 Gm47835 unprocessed_pseudogene Interval_45438 chr13 55168838 55169276 + 0 NA TTS (ENSMUSG00000005320.9) protein_coding-TTS (ENSMUSG00000005320.9) 13374 ENSMUSG00000005320.9 ENSMUSG00000005320 ENSMUST00000162167 Fgfr4 protein_coding Interval_159595 chr8 95713211 95714035 + 0 NA TTS (ENSMUSG00000036564.17) protein_coding-TTS (ENSMUSG00000036564.17) -3386 ENSMUSG00000031671.11 ENSMUSG00000031671 ENSMUST00000154593 Setd6 protein_coding Interval_149603 chr7 99988860 99989369 + 0 NA Intergenic Intergenic -7662 ENSMUSG00000109384.1 ENSMUSG00000109384 ENSMUST00000208132 Gm17931 processed_pseudogene Interval_21880 chr11 4931370 4933743 + 0 NA Intergenic Intergenic 14046 ENSMUSG00000084381.1 ENSMUSG00000084381 ENSMUST00000121125 AA413626 processed_pseudogene Interval_150652 chr7 113107558 113107948 + 0 NA intron (ENSMUSG00000110009.1, intron 3 of 5) lincRNA-intron (ENSMUSG00000110009.1, intron 3 of 4) -11945 ENSMUSG00000088671.1 ENSMUSG00000088671 ENSMUST00000158046 Gm23662 rRNA Interval_103327 chr3 38827510 38827739 + 0 NA Intergenic Intergenic 60635 ENSMUSG00000086181.1 ENSMUSG00000086181 ENSMUST00000153659 C230034O21Rik antisense Interval_58780 chr15 38037695 38038558 + 0 NA intron (ENSMUSG00000037487.7, intron 8 of 58) protein_coding-intron (ENSMUSG00000037487.7, intron 8 of 58) -20159 ENSMUSG00000065852.1 ENSMUSG00000065852 ENSMUST00000083918 Gm22353 snoRNA Interval_38293 chr12 76954849 76955478 + 0 NA promoter-TSS (ENSMUSG00000059436.13) protein_coding-promoter-TSS (ENSMUSG00000059436.13) -754 ENSMUSG00000059436.13 ENSMUSG00000059436 ENSMUST00000219538 Max protein_coding Interval_104153 chr3 59170460 59170744 + 0 NA intron (ENSMUSG00000056476.13, intron 15 of 43) protein_coding-intron (ENSMUSG00000056476.13, intron 14 of 42) 24502 ENSMUSG00000051431.7 ENSMUSG00000051431 ENSMUST00000056898 Gpr87 protein_coding Interval_158945 chr8 88171859 88173464 + 0 NA TTS (ENSMUSG00000031657.16) protein_coding-TTS (ENSMUSG00000031657.16) -1899 ENSMUSG00000062704.3 ENSMUSG00000062704 ENSMUST00000185395 9430002A10Rik lincRNA Interval_146688 chr7 49447898 49450605 + 0 NA intron (ENSMUSG00000052512.17, intron 6 of 38) protein_coding-intron (ENSMUSG00000052512.17, intron 5 of 5) -20461 ENSMUSG00000102148.1 ENSMUSG00000102148 ENSMUST00000193746 Gm38059 TEC Interval_41629 chr12 117196834 117197189 + 0 NA intron (ENSMUSG00000056553.14, intron 14 of 22) protein_coding-intron (ENSMUSG00000056553.14, intron 14 of 22) -45796 ENSMUSG00000099907.1 ENSMUSG00000099907 ENSMUST00000186114 Gm10421 processed_transcript Interval_74617 chr17 53833041 53833826 + 0 NA intron (ENSMUSG00000023122.6, intron 4 of 7) protein_coding-intron (ENSMUSG00000023122.6, intron 4 of 7) 12906 ENSMUSG00000023122.6 ENSMUSG00000023122 ENSMUST00000023886 Sult1c2 protein_coding Interval_25882 chr11 52321701 52322098 + 0 NA Intergenic Intergenic 45844 ENSMUSG00000086395.1 ENSMUSG00000086395 ENSMUST00000150973 A630014C17Rik antisense Interval_26887 chr11 61307308 61308410 + 0 NA intron (ENSMUSG00000069855.9, intron 13 of 14) protein_coding-intron (ENSMUSG00000069855.9, intron 13 of 16) -26902 ENSMUSG00000064718.1 ENSMUSG00000064718 ENSMUST00000082784 Gm25929 snRNA Interval_19316 chr10 96632362 96633103 + 0 NA Intergenic Intergenic 15178 ENSMUSG00000036478.8 ENSMUSG00000036478 ENSMUST00000218953 Btg1 protein_coding Interval_125414 chr5 66822773 66823150 + 0 NA intron (ENSMUSG00000037736.20, intron 1 of 31) protein_coding-intron (ENSMUSG00000037736.20, intron 1 of 25) -67405 ENSMUSG00000082420.2 ENSMUSG00000082420 ENSMUST00000121056 Gm6517 processed_pseudogene Interval_104200 chr3 60499582 60501936 + 0 NA promoter-TSS (ENSMUSG00000027763.13) protein_coding-promoter-TSS (ENSMUSG00000027763.13) -506 ENSMUSG00000027763.13 ENSMUSG00000027763 ENSMUST00000193175 Mbnl1 protein_coding Interval_31444 chr11 100711198 100714780 + 0 NA promoter-TSS (ENSMUSG00000020918.14) protein_coding-promoter-TSS (ENSMUSG00000020918.14) -816 ENSMUSG00000020918.14 ENSMUSG00000020918 ENSMUST00000103118 Kat2a protein_coding Interval_114753 chr4 84769636 84769927 + 0 NA Intergenic Intergenic 28306 ENSMUSG00000086413.1 ENSMUSG00000086413 ENSMUST00000141637 Gm12415 lincRNA Interval_85233 chr19 24064173 24065298 + 0 NA promoter-TSS (ENSMUSG00000096796.1) lincRNA-promoter-TSS (ENSMUSG00000096796.1) -58 ENSMUSG00000096796.1 ENSMUSG00000096796 ENSMUST00000178667 1700021P04Rik lincRNA Interval_50617 chr14 16605912 16606186 + 0 NA intron (ENSMUSG00000017491.9, intron 1 of 1) protein_coding-intron (ENSMUSG00000017491.9, intron 2 of 3) -30222 ENSMUSG00000017491.9 ENSMUSG00000017491 ENSMUST00000225245 Rarb protein_coding Interval_41038 chr12 110758626 110759053 + 0 NA intron (ENSMUSG00000037957.14, intron 1 of 4) protein_coding-intron (ENSMUSG00000037957.14, intron 1 of 2) 20630 ENSMUSG00000037957.14 ENSMUSG00000037957 ENSMUST00000194118 Wdr20 protein_coding Interval_116937 chr4 118319720 118320515 + 0 NA Intergenic Intergenic -28843 ENSMUSG00000033295.14 ENSMUSG00000033295 ENSMUST00000222620 Ptprf protein_coding Interval_4257 chr1 72211696 72212642 + 0 NA exon (ENSMUSG00000039395.8, exon 1 of 5) protein_coding-exon (ENSMUSG00000039395.8, exon 1 of 5) 138 ENSMUSG00000039395.8 ENSMUSG00000039395 ENSMUST00000048860 Mreg protein_coding Interval_62369 chr15 91254802 91255002 + 0 NA intron (ENSMUSG00000078932.8, intron 11 of 12) protein_coding-intron (ENSMUSG00000078932.8, intron 10 of 11) 55408 ENSMUSG00000078932.8 ENSMUSG00000078932 ENSMUST00000109284 CN725425 protein_coding Interval_94698 chr2 93469233 93471485 + 0 NA TTS (ENSMUSG00000075025.10) lincRNA-TTS (ENSMUSG00000075025.10) 1920 ENSMUSG00000075025.10 ENSMUSG00000075025 ENSMUST00000167654 Gm10804 lincRNA Interval_64848 chr16 16522483 16523704 + 0 NA intron (ENSMUSG00000022788.16, intron 1 of 8) protein_coding-intron (ENSMUSG00000022788.16, intron 1 of 16) -19230 ENSMUSG00000089861.1 ENSMUSG00000089861 ENSMUST00000160015 Gm16139 processed_pseudogene Interval_125063 chr5 64202277 64202886 + 0 NA intron (ENSMUSG00000029174.18, intron 3 of 20) protein_coding-intron (ENSMUSG00000029174.18, intron 2 of 21) -11594 ENSMUSG00000083435.2 ENSMUSG00000083435 ENSMUST00000119516 Gm15824 processed_pseudogene Interval_1675 chr1 30948531 30950399 + 0 NA promoter-TSS (ENSMUSG00000026064.16) protein_coding-promoter-TSS (ENSMUSG00000026064.16) -156 ENSMUSG00000026064.16 ENSMUSG00000026064 ENSMUST00000130934 Ptp4a1 protein_coding Interval_59627 chr15 56708295 56708568 + 0 NA intron (ENSMUSG00000086541.8, intron 2 of 2) processed_transcript-intron (ENSMUSG00000086541.8, intron 1 of 2) -13892 ENSMUSG00000022367.7 ENSMUSG00000022367 ENSMUST00000050544 Has2 protein_coding Interval_115106 chr4 90012853 90013146 + 0 NA Intergenic Intergenic -172528 ENSMUSG00000085690.1 ENSMUSG00000085690 ENSMUST00000145751 Gm12629 lincRNA Interval_127971 chr5 109980310 109981953 + 0 NA Intergenic Intergenic 15267 ENSMUSG00000097863.1 ENSMUSG00000097863 ENSMUST00000181488 1010001B22Rik lincRNA Interval_49421 chr13 111868113 111868462 + 0 NA intron (ENSMUSG00000086111.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000086111.1, intron 1 of 2) 351 ENSMUSG00000086111.1 ENSMUSG00000086111 ENSMUST00000127817 Gm15326 lincRNA Interval_126913 chr5 97081496 97081724 + 0 NA TTS (ENSMUSG00000055725.11) protein_coding-TTS (ENSMUSG00000055725.11) 29833 ENSMUSG00000055725.11 ENSMUSG00000055725 ENSMUST00000132127 Paqr3 protein_coding Interval_75024 chr17 61320690 61321307 + 0 NA Intergenic Intergenic -39575 ENSMUSG00000093761.1 ENSMUSG00000093761 ENSMUST00000176658 Obox6-ps1 processed_pseudogene Interval_100209 chr2 167646414 167647169 + 0 NA intron (ENSMUSG00000090213.1, intron 3 of 5) protein_coding-intron (ENSMUSG00000090213.1, intron 3 of 5) -2332 ENSMUSG00000093476.1 ENSMUSG00000093476 ENSMUST00000175531 Gm22355 miRNA Interval_132377 chr5 144590638 144591392 + 0 NA Intergenic Intergenic 45113 ENSMUSG00000059991.7 ENSMUSG00000059991 ENSMUST00000071782 Nptx2 protein_coding Interval_160960 chr8 116383410 116384506 + 0 NA Intergenic Intergenic 26897 ENSMUSG00000110709.1 ENSMUSG00000110709 ENSMUST00000212522 1700018P08Rik lincRNA Interval_151047 chr7 118159654 118159962 + 0 NA promoter-TSS (ENSMUSG00000030655.15) protein_coding-promoter-TSS (ENSMUSG00000030655.15) 6328 ENSMUSG00000065874.1 ENSMUSG00000065874 ENSMUST00000083940 Gm25683 snoRNA Interval_38426 chr12 78980501 78980906 + 0 NA promoter-TSS (ENSMUSG00000046157.13) protein_coding-promoter-TSS (ENSMUSG00000046157.13) 26637 ENSMUSG00000046157.13 ENSMUSG00000046157 ENSMUST00000173095 Tmem229b protein_coding Interval_109073 chr3 135576041 135576406 + 0 NA Intergenic Intergenic 13032 ENSMUSG00000028164.15 ENSMUSG00000028164 ENSMUST00000153412 Manba protein_coding Interval_113616 chr4 57016419 57017663 + 0 NA intron (ENSMUSG00000028434.12, intron 21 of 25) protein_coding-intron (ENSMUSG00000028434.12, intron 3 of 5) -26905 ENSMUSG00000045589.7 ENSMUSG00000045589 ENSMUST00000128276 Frrs1l protein_coding Interval_158465 chr8 83874489 83877065 + 0 NA Intergenic Intergenic -24958 ENSMUSG00000013033.16 ENSMUSG00000013033 ENSMUST00000131018 Adgrl1 protein_coding Interval_10179 chr1 166475007 166476092 + 0 NA Intergenic Intergenic 22039 ENSMUSG00000086056.1 ENSMUSG00000086056 ENSMUST00000143922 Gm4846 protein_coding Interval_29121 chr11 80456356 80456603 + 0 NA TTS (ENSMUSG00000017428.16) protein_coding-TTS (ENSMUSG00000017428.16) -20577 ENSMUSG00000048895.13 ENSMUSG00000048895 ENSMUST00000147694 Cdk5r1 protein_coding Interval_60856 chr15 77185713 77186680 + 0 NA intron (ENSMUSG00000033565.18, intron 1 of 3) protein_coding-intron (ENSMUSG00000033565.18, intron 2 of 12) -7932 ENSMUSG00000116185.1 ENSMUSG00000116185 ENSMUST00000230993 Gm49411 TEC Interval_14427 chr10 33491740 33492183 + 0 NA Intergenic Intergenic -14489 ENSMUSG00000112329.1 ENSMUSG00000112329 ENSMUST00000220089 Gm47908 TEC Interval_28274 chr11 74829903 74832959 + 0 NA intron (ENSMUSG00000000282.12, intron 1 of 5) protein_coding-intron (ENSMUSG00000000282.12, intron 1 of 5) -4895 ENSMUSG00000000282.12 ENSMUSG00000000282 ENSMUST00000132150 Mnt protein_coding Interval_84084 chr19 7112848 7114066 + 0 NA intron (ENSMUSG00000036278.7, intron 3 of 10) protein_coding-intron (ENSMUSG00000036278.7, intron 3 of 10) -7728 ENSMUSG00000047787.8 ENSMUSG00000047787 ENSMUST00000113383 Flrt1 protein_coding Interval_1718 chr1 32519492 32519907 + 0 NA exon (ENSMUSG00000102865.1, exon 1 of 1) TEC-exon (ENSMUSG00000102865.1, exon 1 of 1) 1300 ENSMUSG00000102865.1 ENSMUSG00000102865 ENSMUST00000195252 Gm9839 TEC Interval_38624 chr12 80625975 80627962 + 0 NA intron (ENSMUSG00000021130.8, intron 3 of 3) protein_coding-intron (ENSMUSG00000021130.8, intron 3 of 3) 2590 ENSMUSG00000112047.1 ENSMUSG00000112047 ENSMUST00000219205 Gm47852 processed_pseudogene Interval_161292 chr8 119565329 119567163 + 0 NA TTS (ENSMUSG00000034189.5) protein_coding-TTS (ENSMUSG00000034189.5) 3749 ENSMUSG00000034189.5 ENSMUSG00000034189 ENSMUST00000212198 Hsdl1 protein_coding Interval_49067 chr13 107675911 107677316 + 0 NA Intergenic Intergenic -10784 ENSMUSG00000102000.6 ENSMUSG00000102000 ENSMUST00000188490 1700006H21Rik lincRNA Interval_120261 chr4 145005728 145007109 + 0 NA intron (ENSMUSG00000020220.16, intron 21 of 23) protein_coding-intron (ENSMUSG00000020220.16, intron 65 of 67) -47570 ENSMUSG00000103911.1 ENSMUSG00000103911 ENSMUST00000193467 Gm38074 TEC Interval_134984 chr6 34331231 34332463 + 0 NA Intergenic Intergenic -24268 ENSMUSG00000029762.6 ENSMUSG00000029762 ENSMUST00000133370 Akr1b8 protein_coding Interval_43982 chr13 38670441 38670867 + 0 NA Intergenic Intergenic 3912 ENSMUSG00000114651.1 ENSMUSG00000114651 ENSMUST00000224206 Gm6200 processed_pseudogene Interval_13858 chr10 23979156 23979699 + 0 NA Intergenic Intergenic 6219 ENSMUSG00000045111.5 ENSMUSG00000045111 ENSMUST00000057080 Taar6 protein_coding Interval_145582 chr7 35713340 35713551 + 0 NA TTS (ENSMUSG00000043671.14) protein_coding-TTS (ENSMUSG00000043671.14) -4880 ENSMUSG00000043671.14 ENSMUSG00000043671 ENSMUST00000124116 Dpy19l3 protein_coding Interval_14202 chr10 28805170 28805403 + 0 NA intron (ENSMUSG00000049109.15, intron 5 of 5) protein_coding-intron (ENSMUSG00000049109.15, intron 4 of 5) 1470 ENSMUSG00000112111.1 ENSMUSG00000112111 ENSMUST00000218178 Gm47834 processed_pseudogene Interval_49883 chr13 117602049 117603303 + 0 NA exon (ENSMUSG00000021730.8, exon 1 of 8) protein_coding-exon (ENSMUSG00000021730.8, exon 1 of 8) 356 ENSMUSG00000021730.8 ENSMUSG00000021730 ENSMUST00000006991 Hcn1 protein_coding Interval_13075 chr10 11174031 11174347 + 0 NA intron (ENSMUSG00000090112.8, intron 14 of 20) protein_coding-intron (ENSMUSG00000090112.8, intron 14 of 29) -30830 ENSMUSG00000090112.8 ENSMUSG00000090112 ENSMUST00000161910 Shprh protein_coding Interval_174175 chrX 137136514 137137616 + 0 NA Intergenic Intergenic 6149 ENSMUSG00000081349.1 ENSMUSG00000081349 ENSMUST00000119048 Gm15041 processed_pseudogene Interval_151745 chr7 126376955 126378129 + 0 NA promoter-TSS (ENSMUSG00000030741.15) protein_coding-promoter-TSS (ENSMUSG00000030741.15) -121 ENSMUSG00000030741.15 ENSMUSG00000030741 ENSMUST00000206377 Spns1 protein_coding Interval_102894 chr3 32599347 32599801 + 0 NA TTS (ENSMUSG00000027669.14) protein_coding-TTS (ENSMUSG00000027669.14) -11287 ENSMUSG00000102862.1 ENSMUSG00000102862 ENSMUST00000195407 Gm37640 antisense Interval_39171 chr12 85577606 85577796 + 0 NA Intergenic Intergenic 21490 ENSMUSG00000113165.1 ENSMUSG00000113165 ENSMUST00000223391 Gm47863 bidirectional_promoter_lncRNA Interval_73943 chr17 45600918 45603166 + 0 NA promoter-TSS (ENSMUSG00000079471.4) protein_coding-promoter-TSS (ENSMUSG00000079471.4) -72 ENSMUSG00000079471.4 ENSMUSG00000079471 ENSMUST00000208801 Mymx protein_coding Interval_5185 chr1 86339346 86339858 + 0 NA Intergenic Intergenic 11563 ENSMUSG00000101853.1 ENSMUSG00000101853 ENSMUST00000186141 Gm28627 processed_pseudogene Interval_72904 chr17 33113152 33113649 + 0 NA TTS (ENSMUSG00000048602.9) protein_coding-TTS (ENSMUSG00000048602.9) 23836 ENSMUSG00000067424.13 ENSMUSG00000067424 ENSMUST00000140829 Zfp563 protein_coding Interval_142031 chr6 136625963 136626150 + 0 NA intron (ENSMUSG00000030214.7, intron 6 of 8) protein_coding-intron (ENSMUSG00000030214.7, intron 6 of 10) 5424 ENSMUSG00000107760.1 ENSMUSG00000107760 ENSMUST00000204462 Gm44401 TEC Interval_162132 chr8 125408466 125408976 + 0 NA Intergenic Intergenic 161087 ENSMUSG00000001995.9 ENSMUSG00000001995 ENSMUST00000212604 Sipa1l2 protein_coding Interval_103932 chr3 55106754 55107055 + 0 NA Intergenic Intergenic -5234 ENSMUSG00000036580.15 ENSMUSG00000036580 ENSMUST00000146109 Spg20 protein_coding Interval_18540 chr10 87208820 87208990 + 0 NA intron (ENSMUSG00000047129.11, intron 1 of 1) protein_coding-intron (ENSMUSG00000047129.11, intron 4 of 5) 2926 ENSMUSG00000047129.11 ENSMUSG00000047129 ENSMUST00000189775 1700113H08Rik protein_coding Interval_113656 chr4 57289834 57290685 + 0 NA intron (ENSMUSG00000038764.14, intron 1 of 2) protein_coding-intron (ENSMUSG00000038764.14, intron 1 of 25) -9837 ENSMUSG00000085654.1 ENSMUSG00000085654 ENSMUST00000129102 Gm12536 lincRNA Interval_112316 chr4 40313430 40313650 + 0 NA exon (ENSMUSG00000087137.1, exon 1 of 3) lincRNA-exon (ENSMUSG00000087137.1, exon 1 of 3) 308 ENSMUSG00000087137.1 ENSMUSG00000087137 ENSMUST00000144039 4930509K18Rik lincRNA Interval_127450 chr5 104030867 104031895 + 0 NA Intergenic Intergenic -9543 ENSMUSG00000029311.16 ENSMUSG00000029311 ENSMUST00000119025 Hsd17b11 protein_coding Interval_150997 chr7 117495904 117496161 + 0 NA intron (ENSMUSG00000030657.11, intron 1 of 1) protein_coding-intron (ENSMUSG00000030657.11, intron 2 of 11) 20540 ENSMUSG00000030657.11 ENSMUSG00000030657 ENSMUST00000161889 Xylt1 protein_coding Interval_124891 chr5 59654446 59654760 + 0 NA Intergenic Intergenic -80361 ENSMUSG00000106634.1 ENSMUSG00000106634 ENSMUST00000198676 Gm43042 lincRNA Interval_137258 chr6 70811823 70812064 + 0 NA Intergenic Intergenic -19940 ENSMUSG00000053604.5 ENSMUSG00000053604 ENSMUST00000129244 Rpia protein_coding Interval_105499 chr3 87079607 87080236 + 0 NA exon (ENSMUSG00000041734.15, exon 16 of 16) protein_coding-exon (ENSMUSG00000041734.15, exon 16 of 16) 13028 ENSMUSG00000077672.1 ENSMUSG00000077672 ENSMUST00000104484 Gm24472 snoRNA Interval_40184 chr12 102391882 102392350 + 0 NA Intergenic Intergenic 14030 ENSMUSG00000021190.14 ENSMUSG00000021190 ENSMUST00000146499 Lgmn protein_coding Interval_135354 chr6 38574883 38575247 + 0 NA intron (ENSMUSG00000029823.16, intron 6 of 12) protein_coding-intron (ENSMUSG00000029823.16, intron 2 of 9) 23731 ENSMUSG00000029823.16 ENSMUSG00000029823 ENSMUST00000160430 Luc7l2 protein_coding Interval_157165 chr8 66782715 66783973 + 0 NA intron (ENSMUSG00000110454.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000110454.1, intron 1 of 2) 3264 ENSMUSG00000110454.1 ENSMUSG00000110454 ENSMUST00000211844 Gm45911 lincRNA Interval_11980 chr1 188241762 188241999 + 0 NA Intergenic Intergenic -4260 ENSMUSG00000104482.1 ENSMUSG00000104482 ENSMUST00000194032 Gm38064 lincRNA Interval_44590 chr13 46559600 46560797 + 0 NA intron (ENSMUSG00000021373.16, intron 2 of 11) protein_coding-intron (ENSMUSG00000021373.16, intron 3 of 12) 41514 ENSMUSG00000087913.1 ENSMUSG00000087913 ENSMUST00000157288 Gm24915 rRNA Interval_137192 chr6 69505298 69505548 + 0 NA Intergenic Intergenic -4637 ENSMUSG00000095633.2 ENSMUSG00000095633 ENSMUST00000197448 Igkv4-58 IG_V_gene Interval_131599 chr5 138622595 138623311 + 0 NA promoter-TSS (ENSMUSG00000056014.15) protein_coding-promoter-TSS (ENSMUSG00000056014.15) 94 ENSMUSG00000056014.15 ENSMUSG00000056014 ENSMUST00000069862 A430033K04Rik protein_coding Interval_93230 chr2 71333787 71335172 + 0 NA intron (ENSMUSG00000027010.16, intron 3 of 17) protein_coding-intron (ENSMUSG00000027010.16, intron 1 of 2) 14696 ENSMUSG00000082190.1 ENSMUSG00000082190 ENSMUST00000117993 Gm13641 processed_pseudogene Interval_90282 chr2 29525929 29526591 + 0 NA Intergenic Intergenic 28048 ENSMUSG00000082413.1 ENSMUSG00000082413 ENSMUST00000117074 Gm13401 processed_pseudogene Interval_45823 chr13 58358646 58359824 + 0 NA promoter-TSS (ENSMUSG00000060176.4) protein_coding-promoter-TSS (ENSMUSG00000060176.4) 25990 ENSMUSG00000021550.6 ENSMUSG00000021550 ENSMUST00000022032 2210016F16Rik protein_coding Interval_53725 chr14 61226275 61226603 + 0 NA intron (ENSMUSG00000035296.14, intron 2 of 3) protein_coding-intron (ENSMUSG00000035296.14, intron 6 of 7) 6001 ENSMUSG00000035296.14 ENSMUSG00000035296 ENSMUST00000129886 Sgcg protein_coding Interval_25538 chr11 49658775 49660214 + 0 NA Intergenic Intergenic -4116 ENSMUSG00000064057.12 ENSMUSG00000064057 ENSMUST00000076006 Scgb3a1 protein_coding Interval_30321 chr11 93601213 93602718 + 0 NA TTS (ENSMUSG00000056158.14) protein_coding-TTS (ENSMUSG00000056158.14) -48794 ENSMUSG00000082453.1 ENSMUSG00000082453 ENSMUST00000120917 Gm11502 processed_pseudogene Interval_170071 chr9 104237203 104237482 + 0 NA TTS (ENSMUSG00000032560.14) protein_coding-TTS (ENSMUSG00000032560.14) -24763 ENSMUSG00000104040.1 ENSMUSG00000104040 ENSMUST00000192580 Gm37563 TEC Interval_41698 chr12 117842756 117844224 + 0 NA promoter-TSS (ENSMUSG00000021175.15) protein_coding-promoter-TSS (ENSMUSG00000021175.15) -398 ENSMUSG00000021175.15 ENSMUSG00000021175 ENSMUST00000177339 Cdca7l protein_coding Interval_3654 chr1 60432065 60433095 + 0 NA intron (ENSMUSG00000026782.15, intron 1 of 4) protein_coding-intron (ENSMUSG00000026782.15, intron 1 of 8) 22799 ENSMUSG00000026782.15 ENSMUSG00000026782 ENSMUST00000190158 Abi2 protein_coding Interval_86315 chr19 38645349 38645809 + 0 NA intron (ENSMUSG00000024998.17, intron 2 of 2) protein_coding-intron (ENSMUSG00000024998.17, intron 2 of 31) 58745 ENSMUSG00000117935.1 ENSMUSG00000117935 ENSMUST00000237606 Gm8717 processed_pseudogene Interval_107504 chr3 108172701 108173549 + 0 NA intron (ENSMUSG00000085318.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000085318.1, intron 1 of 1) 6682 ENSMUSG00000085318.1 ENSMUSG00000085318 ENSMUST00000143109 Gm12524 lincRNA Interval_144369 chr7 24720397 24722013 + 0 NA intron (ENSMUSG00000058717.8, intron 4 of 4) protein_coding-intron (ENSMUSG00000058717.8, intron 4 of 4) 3346 ENSMUSG00000058717.8 ENSMUSG00000058717 ENSMUST00000206243 Lypd11 protein_coding Interval_91237 chr2 36230392 36230946 + 0 NA exon (ENSMUSG00000047250.13, exon 2 of 11) protein_coding-exon (ENSMUSG00000047250.13, exon 2 of 11) -10044 ENSMUSG00000047250.13 ENSMUSG00000047250 ENSMUST00000133777 Ptgs1 protein_coding Interval_113228 chr4 50630737 50631214 + 0 NA Intergenic Intergenic 344229 ENSMUSG00000095394.1 ENSMUSG00000095394 ENSMUST00000104120 Gm25485 snoRNA Interval_122106 chr5 17112220 17112431 + 0 NA Intergenic Intergenic 115609 ENSMUSG00000091273.1 ENSMUSG00000091273 ENSMUST00000166114 Gm6673 unprocessed_pseudogene Interval_101868 chr3 10286840 10287074 + 0 NA intron (ENSMUSG00000027530.15, intron 1 of 5) protein_coding-intron (ENSMUSG00000027530.15, intron 1 of 5) -17834 ENSMUSG00000104092.2 ENSMUSG00000104092 ENSMUST00000194572 A930014E01Rik TEC Interval_66800 chr16 37744807 37745014 + 0 NA Intergenic Intergenic -32145 ENSMUSG00000022816.11 ENSMUSG00000022816 ENSMUST00000123077 Fstl1 protein_coding Interval_43757 chr13 36112129 36112354 + 0 NA intron (ENSMUSG00000046573.7, intron 1 of 2) protein_coding-intron (ENSMUSG00000046573.7, intron 1 of 2) 5285 ENSMUSG00000046573.7 ENSMUSG00000046573 ENSMUST00000053265 Lyrm4 protein_coding Interval_46208 chr13 62510213 62511536 + 0 NA intron (ENSMUSG00000074865.11, intron 1 of 5) protein_coding-intron (ENSMUSG00000055228.8, intron 1 of 2) 18086 ENSMUSG00000113428.1 ENSMUSG00000113428 ENSMUST00000221988 Gm7664 processed_pseudogene Interval_142706 chr6 145073705 145074083 + 0 NA intron (ENSMUSG00000030268.17, intron 1 of 10) protein_coding-intron (ENSMUSG00000030268.17, intron 1 of 9) 17505 ENSMUSG00000086643.1 ENSMUSG00000086643 ENSMUST00000141440 Gm15687 antisense Interval_120170 chr4 143172809 143173434 + 0 NA intron (ENSMUSG00000057637.13, intron 4 of 5) protein_coding-intron (ENSMUSG00000057637.13, intron 4 of 9) 6518 ENSMUSG00000083826.1 ENSMUSG00000083826 ENSMUST00000118638 Gm13039 processed_pseudogene Interval_172200 chrX 9060898 9061195 + 0 NA Intergenic Intergenic -1969 ENSMUSG00000072249.3 ENSMUSG00000072249 ENSMUST00000097029 Fthl17f protein_coding Interval_30145 chr11 89680637 89681387 + 0 NA intron (ENSMUSG00000047773.15, intron 3 of 21) protein_coding-intron (ENSMUSG00000047773.15, intron 1 of 16) 160254 ENSMUSG00000047773.15 ENSMUSG00000047773 ENSMUST00000207171 Ankfn1 protein_coding Interval_94382 chr2 90645258 90646578 + 0 NA Intergenic Intergenic -39253 ENSMUSG00000051329.13 ENSMUSG00000051329 ENSMUST00000126503 Nup160 protein_coding Interval_35807 chr12 30109533 30110460 + 0 NA intron (ENSMUSG00000020673.14, intron 5 of 16) protein_coding-intron (ENSMUSG00000020673.14, intron 5 of 16) 21903 ENSMUSG00000020673.14 ENSMUSG00000020673 ENSMUST00000155263 Tpo protein_coding Interval_134112 chr6 20550697 20551699 + 0 NA Intergenic Intergenic 419792 ENSMUSG00000106763.1 ENSMUSG00000106763 ENSMUST00000201133 Gm19102 processed_pseudogene Interval_55620 chr14 96205739 96206056 + 0 NA intron (ENSMUSG00000022076.10, intron 6 of 10) protein_coding-intron (ENSMUSG00000022076.10, intron 6 of 10) -26056 ENSMUSG00000083933.1 ENSMUSG00000083933 ENSMUST00000117827 Gm15515 processed_pseudogene Interval_54659 chr14 72996578 72997167 + 0 NA Intergenic Intergenic -16968 ENSMUSG00000115085.1 ENSMUSG00000115085 ENSMUST00000226196 Gm9198 processed_pseudogene Interval_143681 chr7 14399031 14400331 + 0 NA Intergenic Intergenic -29474 ENSMUSG00000107673.1 ENSMUSG00000107673 ENSMUST00000203723 Crs-ps unprocessed_pseudogene Interval_48545 chr13 100008325 100009396 + 0 NA intron (ENSMUSG00000021646.9, intron 1 of 5) protein_coding-intron (ENSMUSG00000021646.9, intron 1 of 16) -33544 ENSMUSG00000021646.9 ENSMUSG00000021646 ENSMUST00000221846 Mccc2 protein_coding Interval_124060 chr5 37920233 37921075 + 0 NA Intergenic Intergenic 26304 ENSMUSG00000106718.1 ENSMUSG00000106718 ENSMUST00000201327 Gm20052 lincRNA Interval_128623 chr5 114356630 114357440 + 0 NA promoter-TSS (ENSMUSG00000066952.11) protein_coding-promoter-TSS (ENSMUSG00000066952.11) 13172 ENSMUSG00000001098.15 ENSMUSG00000001098 ENSMUST00000123538 Kctd10 protein_coding Interval_154223 chr8 13568012 13568738 + 0 NA exon (ENSMUSG00000031453.16, exon 24 of 24) protein_coding-exon (ENSMUSG00000031453.16, exon 24 of 24) -5914 ENSMUSG00000031452.15 ENSMUSG00000031452 ENSMUST00000132787 1700029H14Rik protein_coding Interval_117693 chr4 125585086 125585408 + 0 NA intron (ENSMUSG00000001985.9, intron 1 of 15) protein_coding-intron (ENSMUSG00000001985.9, intron 1 of 15) 80498 ENSMUSG00000094403.1 ENSMUSG00000094403 ENSMUST00000102081 Mir692-2 miRNA Interval_4613 chr1 75447032 75448254 + 0 NA Intergenic Intergenic -2793 ENSMUSG00000033007.15 ENSMUSG00000033007 ENSMUST00000037708 Asic4 protein_coding Interval_96403 chr2 122227937 122228217 + 0 NA Intergenic Intergenic -6672 ENSMUSG00000027227.7 ENSMUSG00000027227 ENSMUST00000110551 Sord protein_coding Interval_145771 chr7 38190463 38192154 + 0 NA intron (ENSMUSG00000054676.15, intron 2 of 2) protein_coding-intron (ENSMUSG00000054676.15, intron 2 of 3) 7410 ENSMUSG00000054676.15 ENSMUSG00000054676 ENSMUST00000179503 1600014C10Rik protein_coding Interval_31687 chr11 102257304 102259186 + 0 NA intron (ENSMUSG00000034773.16, intron 2 of 4) protein_coding-intron (ENSMUSG00000034773.16, intron 2 of 4) 2589 ENSMUSG00000034773.16 ENSMUSG00000034773 ENSMUST00000140040 Hrob protein_coding Interval_19874 chr10 110775006 110775247 + 0 NA TTS (ENSMUSG00000020185.16) protein_coding-TTS (ENSMUSG00000020185.16) -21047 ENSMUSG00000089461.1 ENSMUSG00000089461 ENSMUST00000158836 Gm23698 snoRNA Interval_9756 chr1 161787991 161788873 + 0 NA promoter-TSS (ENSMUSG00000000817.10) protein_coding-promoter-TSS (ENSMUSG00000000817.10) -74 ENSMUSG00000000817.10 ENSMUSG00000000817 ENSMUST00000193648 Fasl protein_coding Interval_122855 chr5 26149090 26149850 + 0 NA Intergenic Intergenic -28049 ENSMUSG00000067698.4 ENSMUSG00000067698 ENSMUST00000088236 Gm10220 protein_coding Interval_98859 chr2 155618612 155620085 + 0 NA intron (ENSMUSG00000074652.3, intron 11 of 41) protein_coding-intron (ENSMUSG00000074652.3, intron 11 of 41) -3532 ENSMUSG00000076312.1 ENSMUSG00000076312 ENSMUST00000102357 Mir499 miRNA Interval_102331 chr3 21960345 21961096 + 0 NA Intergenic Intergenic 37748 ENSMUSG00000106321.1 ENSMUSG00000106321 ENSMUST00000196313 Gm43674 lincRNA Interval_46928 chr13 73494184 73495389 + 0 NA intron (ENSMUSG00000021608.15, intron 3 of 13) protein_coding-intron (ENSMUSG00000021608.15, intron 3 of 13) 23035 ENSMUSG00000021608.15 ENSMUSG00000021608 ENSMUST00000222881 Lpcat1 protein_coding Interval_15006 chr10 41879844 41880368 + 0 NA intron (ENSMUSG00000038332.13, intron 1 of 9) protein_coding-intron (ENSMUSG00000038332.13, intron 1 of 9) -18267 ENSMUSG00000038332.13 ENSMUSG00000038332 ENSMUST00000214835 Sesn1 protein_coding Interval_108723 chr3 130723486 130723934 + 0 NA Intergenic Intergenic 6636 ENSMUSG00000062006.12 ENSMUSG00000062006 ENSMUST00000200517 Rpl34 protein_coding Interval_49106 chr13 108099647 108101335 + 0 NA intron (ENSMUSG00000068184.7, intron 1 of 3) protein_coding-intron (ENSMUSG00000068184.7, intron 1 of 3) 56005 ENSMUSG00000071180.5 ENSMUSG00000071180 ENSMUST00000224390 Smim15 protein_coding Interval_113750 chr4 58082279 58083172 + 0 NA exon (ENSMUSG00000028369.15, exon 36 of 48) protein_coding-exon (ENSMUSG00000028369.15, exon 36 of 48) -73601 ENSMUSG00000038709.15 ENSMUSG00000038709 ENSMUST00000239406 Txndc8 protein_coding Interval_43432 chr13 30884801 30885061 + 0 NA intron (ENSMUSG00000021357.14, intron 13 of 28) protein_coding-intron (ENSMUSG00000021357.14, intron 12 of 27) 62828 ENSMUSG00000076430.1 ENSMUSG00000076430 ENSMUST00000102943 Hus1b protein_coding Interval_103314 chr3 38519855 38520691 + 0 NA Intergenic Intergenic -37182 ENSMUSG00000044864.16 ENSMUSG00000044864 ENSMUST00000127837 Ankrd50 protein_coding Interval_133585 chr6 7190263 7190490 + 0 NA Intergenic Intergenic 3796 ENSMUSG00000098421.1 ENSMUSG00000098421 ENSMUST00000184890 Gm27190 processed_pseudogene Interval_158642 chr8 84924728 84925463 + 0 NA promoter-TSS (ENSMUSG00000053693.16) protein_coding-promoter-TSS (ENSMUSG00000053693.16) 538 ENSMUSG00000092826.1 ENSMUSG00000092826 ENSMUST00000175085 Gm24197 miRNA Interval_66754 chr16 37042173 37043226 + 0 NA intron (ENSMUSG00000034206.15, intron 8 of 25) protein_coding-intron (ENSMUSG00000034206.15, intron 12 of 29) 30913 ENSMUSG00000034206.15 ENSMUSG00000034206 ENSMUST00000182717 Polq protein_coding Interval_2011 chr1 35881283 35882128 + 0 NA TTS (ENSMUSG00000102531.1) lincRNA-TTS (ENSMUSG00000102531.1) 1860 ENSMUSG00000102531.1 ENSMUSG00000102531 ENSMUST00000194261 1110002O04Rik lincRNA Interval_169500 chr9 98507601 98507910 + 0 NA intron (ENSMUSG00000032454.9, intron 3 of 4) protein_coding-intron (ENSMUSG00000032454.9, intron 2 of 3) 13787 ENSMUSG00000103579.1 ENSMUSG00000103579 ENSMUST00000195675 Gm37113 TEC Interval_65966 chr16 30581158 30582206 + 0 NA TTS (ENSMUSG00000022538.20) protein_coding-TTS (ENSMUSG00000022538.20) -6439 ENSMUSG00000022538.20 ENSMUSG00000022538 ENSMUST00000129004 Lsg1 protein_coding Interval_128479 chr5 113570060 113570921 + 0 NA promoter-TSS (ENSMUSG00000063430.9) protein_coding-promoter-TSS (ENSMUSG00000063430.9) -8298 ENSMUSG00000063430.9 ENSMUSG00000063430 ENSMUST00000198673 Wscd2 protein_coding Interval_18852 chr10 91286691 91286880 + 0 NA Intergenic Intergenic -23560 ENSMUSG00000111525.1 ENSMUSG00000111525 ENSMUST00000214371 Gm47082 lincRNA Interval_66662 chr16 35938363 35940023 + 0 NA promoter-TSS (ENSMUSG00000049502.17) protein_coding-promoter-TSS (ENSMUSG00000049502.17) -42 ENSMUSG00000049502.17 ENSMUSG00000049502 ENSMUST00000114885 Dtx3l protein_coding Interval_153182 chr7 142169007 142170627 + 0 NA Intergenic Intergenic -4078 ENSMUSG00000090471.2 ENSMUSG00000090471 ENSMUST00000168049 Gm4553 protein_coding Interval_30286 chr11 92896476 92897246 + 0 NA Intergenic Intergenic -13436 ENSMUSG00000087810.1 ENSMUSG00000087810 ENSMUST00000157185 Gm25113 snoRNA Interval_112963 chr4 46488990 46489806 + 0 NA promoter-TSS (ENSMUSG00000028334.10) protein_coding-promoter-TSS (ENSMUSG00000028334.10) 24 ENSMUSG00000028334.10 ENSMUSG00000028334 ENSMUST00000137874 Nans protein_coding Interval_100654 chr2 170826330 170827372 + 0 NA intron (ENSMUSG00000027560.4, intron 2 of 7) protein_coding-intron (ENSMUSG00000027560.4, intron 2 of 7) 95044 ENSMUSG00000027560.4 ENSMUSG00000027560 ENSMUST00000029075 Dok5 protein_coding Interval_166699 chr9 62049681 62051110 + 0 NA Intergenic Intergenic 20445 ENSMUSG00000032252.14 ENSMUSG00000032252 ENSMUST00000185510 Glce protein_coding Interval_82764 chr18 76907984 76908485 + 0 NA Intergenic Intergenic -21892 ENSMUSG00000117732.1 ENSMUSG00000117732 ENSMUST00000142456 Gm50364 protein_coding Interval_4754 chr1 78387671 78389307 + 0 NA intron (ENSMUSG00000032908.9, intron 2 of 4) protein_coding-intron (ENSMUSG00000032908.9, intron 2 of 4) 12875 ENSMUSG00000102945.1 ENSMUSG00000102945 ENSMUST00000191857 Gm37884 TEC Interval_158154 chr8 79272257 79272695 + 0 NA intron (ENSMUSG00000037022.3, intron 5 of 7) protein_coding-intron (ENSMUSG00000037022.3, intron 4 of 6) 22204 ENSMUSG00000037022.3 ENSMUSG00000037022 ENSMUST00000210231 Mmaa protein_coding Interval_149743 chr7 101073993 101074359 + 0 NA Intergenic Intergenic -12701 ENSMUSG00000109171.1 ENSMUSG00000109171 ENSMUST00000207053 Gm5735 processed_pseudogene Interval_172862 chrX 52276658 52279319 + 0 NA intron (ENSMUSG00000055653.13, intron 7 of 7) protein_coding-intron (ENSMUSG00000055653.13, intron 7 of 7) -18193 ENSMUSG00000086704.1 ENSMUSG00000086704 ENSMUST00000141697 Gm14582 antisense Interval_68870 chr16 87714780 87715362 + 0 NA intron (ENSMUSG00000025612.5, intron 1 of 2) protein_coding-intron (ENSMUSG00000025612.5, intron 1 of 4) 16067 ENSMUSG00000025612.5 ENSMUSG00000025612 ENSMUST00000156958 Bach1 protein_coding Interval_93447 chr2 73117413 73118089 + 0 NA TTS (ENSMUSG00000082455.3) processed_pseudogene-TTS (ENSMUSG00000082455.3) 1003 ENSMUSG00000082455.3 ENSMUSG00000082455 ENSMUST00000120830 Gm13665 processed_pseudogene Interval_124796 chr5 54154199 54155088 + 0 NA Intergenic Intergenic 38786 ENSMUSG00000039156.19 ENSMUSG00000039156 ENSMUST00000202342 Stim2 protein_coding Interval_5072 chr1 84804123 84804534 + 0 NA intron (ENSMUSG00000026219.14, intron 2 of 5) protein_coding-intron (ENSMUSG00000026219.14, intron 2 of 40) 4862 ENSMUSG00000103505.1 ENSMUSG00000103505 ENSMUST00000194417 Gm38374 TEC Interval_35492 chr12 23024542 23025252 + 0 NA Intergenic Intergenic -6085 ENSMUSG00000112996.1 ENSMUSG00000112996 ENSMUST00000223360 Gm48064 processed_pseudogene Interval_1626 chr1 30402219 30403347 + 0 NA Intergenic Intergenic -69386 ENSMUSG00000098883.1 ENSMUSG00000098883 ENSMUST00000184585 Gm27430 miRNA Interval_35660 chr12 27064874 27065525 + 0 NA intron (ENSMUSG00000094002.3, intron 3 of 4) lincRNA-intron (ENSMUSG00000094002.3, intron 3 of 4) 95304 ENSMUSG00000094002.3 ENSMUSG00000094002 ENSMUST00000183238 Gm9866 lincRNA Interval_85414 chr19 25597375 25598276 + 0 NA intron (ENSMUSG00000024837.15, intron 3 of 3) protein_coding-intron (ENSMUSG00000024837.15, intron 4 of 4) -12476 ENSMUSG00000042372.5 ENSMUSG00000042372 ENSMUST00000048935 Dmrt3 protein_coding Interval_37085 chr12 57563883 57564717 + 0 NA intron (ENSMUSG00000046782.14, intron 1 of 4) protein_coding-intron (ENSMUSG00000046782.14, intron 1 of 4) -11517 ENSMUSG00000046782.14 ENSMUSG00000046782 ENSMUST00000172852 Ttc6 protein_coding Interval_71159 chr17 20506691 20506887 + 0 NA TTS (ENSMUSG00000043537.2) protein_coding-TTS (ENSMUSG00000043537.2) 8631 ENSMUSG00000043537.2 ENSMUSG00000043537 ENSMUST00000061660 Vmn1r225 protein_coding Interval_155349 chr8 32071674 32071949 + 0 NA intron (ENSMUSG00000062991.9, intron 1 of 12) protein_coding-intron (ENSMUSG00000062991.9, intron 1 of 8) -62702 ENSMUSG00000062991.9 ENSMUSG00000062991 ENSMUST00000208206 Nrg1 protein_coding Interval_117146 chr4 120011113 120011350 + 0 NA intron (ENSMUSG00000028634.17, intron 2 of 8) protein_coding-intron (ENSMUSG00000028634.17, intron 2 of 8) -21535 ENSMUSG00000028634.17 ENSMUSG00000028634 ENSMUST00000166542 Hivep3 protein_coding Interval_70567 chr17 12058087 12058310 + 0 NA intron (ENSMUSG00000023826.16, intron 10 of 10) protein_coding-intron (ENSMUSG00000023826.16, intron 2 of 2) -61131 ENSMUSG00000023827.8 ENSMUSG00000023827 ENSMUST00000167905 Agpat4 protein_coding Interval_104668 chr3 69262064 69262376 + 0 NA Intergenic Intergenic 39801 ENSMUSG00000098207.1 ENSMUSG00000098207 ENSMUST00000183126 Arl14 protein_coding Interval_78351 chr18 12105450 12105880 + 0 NA intron (ENSMUSG00000049411.15, intron 2 of 3) protein_coding-intron (ENSMUSG00000049411.15, intron 3 of 12) 15815 ENSMUSG00000049411.15 ENSMUSG00000049411 ENSMUST00000234833 Tmem241 protein_coding Interval_25937 chr11 52752764 52752983 + 0 NA Intergenic Intergenic -11761 ENSMUSG00000036264.9 ENSMUSG00000036264 ENSMUST00000036796 Fstl4 protein_coding Interval_9190 chr1 154956942 154958419 + 0 NA Intergenic Intergenic -74059 ENSMUSG00000101433.1 ENSMUSG00000101433 ENSMUST00000191584 Gm29441 processed_pseudogene Interval_61088 chr15 79162804 79164497 + 0 NA exon (ENSMUSG00000033006.10, exon 2 of 4) protein_coding-exon (ENSMUSG00000033006.10, exon 2 of 4) 836 ENSMUSG00000033006.10 ENSMUSG00000033006 ENSMUST00000230891 Sox10 protein_coding Interval_144177 chr7 19811234 19811534 + 0 NA TTS (ENSMUSG00000053175.17) protein_coding-TTS (ENSMUSG00000053175.17) 505 ENSMUSG00000053175.17 ENSMUSG00000053175 ENSMUST00000139680 Bcl3 protein_coding Interval_6294 chr1 105618389 105618670 + 0 NA intron (ENSMUSG00000056536.14, intron 14 of 25) protein_coding-intron (ENSMUSG00000056536.14, intron 12 of 28) 2787 ENSMUSG00000101656.1 ENSMUSG00000101656 ENSMUST00000187782 Gm8004 processed_pseudogene Interval_29159 chr11 80820972 80822026 + 0 NA exon (ENSMUSG00000035413.8, exon 7 of 7) protein_coding-exon (ENSMUSG00000035413.8, exon 7 of 7) 1694 ENSMUSG00000081663.1 ENSMUSG00000081663 ENSMUST00000117824 Gm11207 processed_pseudogene Interval_40189 chr12 102416455 102416938 + 0 NA intron (ENSMUSG00000021190.14, intron 1 of 12) protein_coding-intron (ENSMUSG00000021190.14, intron 2 of 13) -10550 ENSMUSG00000021190.14 ENSMUSG00000021190 ENSMUST00000146499 Lgmn protein_coding Interval_79629 chr18 34092678 34094005 + 0 NA promoter-TSS (ENSMUSG00000077263.1) snoRNA-promoter-TSS (ENSMUSG00000077263.1) -104 ENSMUSG00000077263.1 ENSMUSG00000077263 ENSMUST00000104075 Gm24432 snoRNA Interval_35904 chr12 31798960 31801151 + 0 NA intron (ENSMUSG00000035933.5, intron 8 of 22) protein_coding-intron (ENSMUSG00000035933.5, intron 8 of 22) 49571 ENSMUSG00000111987.1 ENSMUSG00000111987 ENSMUST00000220137 Gm48809 antisense Interval_75468 chr17 66854293 66854765 + 0 NA intron (ENSMUSG00000033278.10, intron 5 of 6) protein_coding-intron (ENSMUSG00000033278.10, intron 15 of 32) -7711 ENSMUSG00000117224.1 ENSMUSG00000117224 ENSMUST00000233778 Gm49940 processed_pseudogene Interval_37590 chr12 70113654 70113894 + 0 NA promoter-TSS (ENSMUSG00000021068.17) protein_coding-promoter-TSS (ENSMUSG00000021068.17) 200 ENSMUSG00000114099.1 ENSMUSG00000114099 ENSMUST00000221641 Gm48695 bidirectional_promoter_lncRNA Interval_136286 chr6 52530592 52531237 + 0 NA Intergenic Intergenic 21025 ENSMUSG00000108062.1 ENSMUSG00000108062 ENSMUST00000205205 Gm44028 lincRNA Interval_148341 chr7 80611175 80612711 + 0 NA intron (ENSMUSG00000030527.15, intron 3 of 7) protein_coding-intron (ENSMUSG00000030527.15, intron 6 of 14) -8160 ENSMUSG00000108643.1 ENSMUSG00000108643 ENSMUST00000206056 Gm44931 TEC Interval_137725 chr6 81771899 81772373 + 0 NA Intergenic Intergenic -34655 ENSMUSG00000089445.1 ENSMUSG00000089445 ENSMUST00000158820 Gm22530 snoRNA Interval_95687 chr2 114164523 114164995 + 0 NA intron (ENSMUSG00000040383.16, intron 4 of 8) protein_coding-intron (ENSMUSG00000040383.16, intron 4 of 34) -14189 ENSMUSG00000098464.1 ENSMUSG00000098464 ENSMUST00000184524 Mir7002 miRNA Interval_130117 chr5 124386299 124386713 + 0 NA exon (ENSMUSG00000038095.15, exon 1 of 1) protein_coding-exon (ENSMUSG00000038095.15, exon 1 of 1) 19223 ENSMUSG00000038095.15 ENSMUSG00000038095 ENSMUST00000197974 Sbno1 protein_coding Interval_106804 chr3 100982400 100982649 + 0 NA Intergenic Intergenic -22529 ENSMUSG00000033222.16 ENSMUSG00000033222 ENSMUST00000200506 Ttf2 protein_coding Interval_83292 chr18 83804771 83804968 + 0 NA Intergenic Intergenic 22737 ENSMUSG00000118024.1 ENSMUSG00000118024 ENSMUST00000237374 Gm50419 lincRNA Interval_22662 chr11 12647570 12648133 + 0 NA Intergenic Intergenic -29082 ENSMUSG00000089034.1 ENSMUSG00000089034 ENSMUST00000158409 Gm22156 snoRNA Interval_157086 chr8 65056502 65057278 + 0 NA Intergenic Intergenic -18143 ENSMUSG00000074302.1 ENSMUSG00000074302 ENSMUST00000098716 Gm10663 protein_coding Interval_14704 chr10 39182059 39182672 + 0 NA Intergenic Intergenic -9113 ENSMUSG00000111055.1 ENSMUSG00000111055 ENSMUST00000215835 D030034A15Rik lincRNA Interval_100610 chr2 170442481 170442976 + 0 NA Intergenic Intergenic 21091 ENSMUSG00000084067.3 ENSMUSG00000084067 ENSMUST00000120455 Gm14269 processed_pseudogene Interval_90567 chr2 31193600 31194765 + 0 NA intron (ENSMUSG00000000194.13, intron 2 of 3) protein_coding-intron (ENSMUSG00000000194.13, intron 14 of 17) 4491 ENSMUSG00000088891.1 ENSMUSG00000088891 ENSMUST00000158266 Gm22516 snoRNA Interval_61543 chr15 82251162 82251531 + 0 NA Intergenic Intergenic -4677 ENSMUSG00000068099.5 ENSMUSG00000068099 ENSMUST00000143238 1500009C09Rik protein_coding Interval_28828 chr11 78569138 78569423 + 0 NA promoter-TSS (ENSMUSG00000017376.15) protein_coding-promoter-TSS (ENSMUSG00000017376.15) 3119 ENSMUSG00000017376.15 ENSMUSG00000017376 ENSMUST00000165271 Nlk protein_coding Interval_130415 chr5 127457007 127457255 + 0 NA intron (ENSMUSG00000034324.16, intron 2 of 8) protein_coding-intron (ENSMUSG00000034324.16, intron 2 of 8) -96123 ENSMUSG00000034324.16 ENSMUSG00000034324 ENSMUST00000145748 Tmem132c protein_coding Interval_151932 chr7 127630834 127631753 + 0 NA Intergenic Intergenic -16928 ENSMUSG00000045639.14 ENSMUSG00000045639 ENSMUST00000152315 Zfp629 protein_coding Interval_110058 chr3 152846377 152846816 + 0 NA exon (ENSMUSG00000039037.5, exon 3 of 5) protein_coding-exon (ENSMUSG00000039037.5, exon 3 of 5) 29621 ENSMUSG00000090040.1 ENSMUSG00000090040 ENSMUST00000162856 Gm16232 processed_pseudogene Interval_69939 chr17 3350159 3350358 + 0 NA intron (ENSMUSG00000023800.15, intron 1 of 26) protein_coding-intron (ENSMUSG00000023800.15, intron 1 of 26) -3191 ENSMUSG00000115330.1 ENSMUSG00000115330 ENSMUST00000226386 Gm49221 processed_pseudogene Interval_114978 chr4 87970631 87971288 + 0 NA intron (ENSMUSG00000028496.17, intron 2 of 4) protein_coding-intron (ENSMUSG00000028496.17, intron 2 of 10) -62542 ENSMUSG00000084809.1 ENSMUSG00000084809 ENSMUST00000130576 Gm12631 antisense Interval_59644 chr15 57309180 57309763 + 0 NA intron (ENSMUSG00000022366.12, intron 2 of 11) protein_coding-intron (ENSMUSG00000022366.12, intron 2 of 11) -38278 ENSMUSG00000115226.1 ENSMUSG00000115226 ENSMUST00000226272 Gm49229 processed_pseudogene Interval_95441 chr2 109365677 109365969 + 0 NA Intergenic Intergenic 73800 ENSMUSG00000027115.14 ENSMUSG00000027115 ENSMUST00000162515 Kif18a protein_coding Interval_51460 chr14 27709427 27710332 + 0 NA intron (ENSMUSG00000040640.11, intron 1 of 15) protein_coding-intron (ENSMUSG00000040640.11, intron 2 of 15) -4498 ENSMUSG00000114653.1 ENSMUSG00000114653 ENSMUST00000224481 Gm18398 processed_pseudogene Interval_163198 chr9 17973410 17973814 + 0 NA Intergenic Intergenic -48612 ENSMUSG00000111263.1 ENSMUSG00000111263 ENSMUST00000216198 Gm7680 processed_pseudogene Interval_18343 chr10 85060907 85061829 + 0 NA Intergenic Intergenic 41127 ENSMUSG00000050035.7 ENSMUSG00000050035 ENSMUST00000216889 Fhl4 protein_coding Interval_159594 chr8 95702396 95704166 + 0 NA intron (ENSMUSG00000036564.17, intron 1 of 7) protein_coding-intron (ENSMUSG00000036564.17, intron 3 of 16) 211 ENSMUSG00000036564.17 ENSMUSG00000036564 ENSMUST00000161314 Ndrg4 protein_coding Interval_93629 chr2 75152569 75152962 + 0 NA intron (ENSMUSG00000086044.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000086044.1, intron 1 of 1) 13885 ENSMUSG00000100303.3 ENSMUSG00000100303 ENSMUST00000229575 2600014E21Rik lincRNA Interval_158547 chr8 84387245 84387583 + 0 NA intron (ENSMUSG00000034656.18, intron 2 of 48) protein_coding-intron (ENSMUSG00000034656.18, intron 2 of 48) -6833 ENSMUSG00000064392.1 ENSMUSG00000064392 ENSMUST00000082458 Gm23626 snoRNA Interval_174264 chrX 142490028 142490271 + 0 NA Intergenic Intergenic -4702 ENSMUSG00000077453.1 ENSMUSG00000077453 ENSMUST00000104265 Gm25915 snoRNA Interval_55746 chr14 99521893 99522177 + 0 NA promoter-TSS (ENSMUSG00000115580.1) lincRNA-promoter-TSS (ENSMUSG00000115580.1) -510 ENSMUSG00000115580.1 ENSMUSG00000115580 ENSMUST00000228876 Gm41230 lincRNA Interval_126259 chr5 84753626 84754465 + 0 NA Intergenic Intergenic 112800 ENSMUSG00000106389.1 ENSMUSG00000106389 ENSMUST00000196930 Gm21006 processed_pseudogene Interval_140316 chr6 116413501 116414826 + 0 NA promoter-TSS (ENSMUSG00000025701.12) protein_coding-promoter-TSS (ENSMUSG00000025701.12) 24701 ENSMUSG00000107556.1 ENSMUSG00000107556 ENSMUST00000205183 Gm44237 TEC Interval_141841 chr6 134860577 134861809 + 0 NA Intergenic Intergenic 10035 ENSMUSG00000032652.13 ENSMUSG00000032652 ENSMUST00000203742 Crebl2 protein_coding Interval_156265 chr8 46639054 46640261 + 0 NA TTS (ENSMUSG00000031628.9) protein_coding-TTS (ENSMUSG00000031628.9) 22366 ENSMUSG00000031628.9 ENSMUSG00000031628 ENSMUST00000210534 Casp3 protein_coding Interval_173457 chrX 94108154 94108637 + 0 NA intron (ENSMUSG00000079509.10, intron 2 of 5) protein_coding-intron (ENSMUSG00000079509.10, intron 2 of 8) 14980 ENSMUSG00000079509.10 ENSMUSG00000079509 ENSMUST00000130312 Zfx protein_coding Interval_160561 chr8 110684512 110685071 + 0 NA intron (ENSMUSG00000010936.11, intron 14 of 14) protein_coding-intron (ENSMUSG00000010936.11, intron 14 of 18) 39211 ENSMUSG00000010936.11 ENSMUSG00000010936 ENSMUST00000213015 Vac14 protein_coding Interval_151505 chr7 123138345 123138547 + 0 NA intron (ENSMUSG00000052707.8, intron 2 of 3) protein_coding-intron (ENSMUSG00000052707.8, intron 2 of 23) -33200 ENSMUSG00000052707.8 ENSMUSG00000052707 ENSMUST00000206126 Tnrc6a protein_coding Interval_106860 chr3 101357038 101357746 + 0 NA Intergenic Intergenic -19691 ENSMUSG00000042035.11 ENSMUSG00000042035 ENSMUST00000195164 Igsf3 protein_coding Interval_93824 chr2 77247597 77247860 + 0 NA intron (ENSMUSG00000042272.17, intron 1 of 11) protein_coding-intron (ENSMUSG00000042272.17, intron 1 of 17) 8695 ENSMUSG00000084087.1 ENSMUSG00000084087 ENSMUST00000117729 Gm13650 processed_pseudogene Interval_102801 chr3 31149823 31150019 + 0 NA promoter-TSS (ENSMUSG00000037625.7) protein_coding-promoter-TSS (ENSMUSG00000037625.7) 1 ENSMUSG00000037625.7 ENSMUSG00000037625 ENSMUST00000046174 Cldn11 protein_coding Interval_149495 chr7 99102345 99102607 + 0 NA intron (ENSMUSG00000035354.9, intron 3 of 11) protein_coding-intron (ENSMUSG00000035354.9, intron 3 of 14) 12244 ENSMUSG00000109492.1 ENSMUSG00000109492 ENSMUST00000208990 Gm33882 processed_pseudogene Interval_18235 chr10 84056433 84056877 + 0 NA intron (ENSMUSG00000111049.1, intron 2 of 4) lincRNA-intron (ENSMUSG00000111049.1, intron 2 of 4) -5103 ENSMUSG00000104317.1 ENSMUSG00000104317 ENSMUST00000195828 Gm37908 TEC Interval_111153 chr4 13296350 13296945 + 0 NA Intergenic Intergenic -29597 ENSMUSG00000080359.2 ENSMUSG00000080359 ENSMUST00000116709 Gm26250 miRNA Interval_172081 chrX 6412098 6412344 + 0 NA intron (ENSMUSG00000068270.15, intron 1 of 8) protein_coding-intron (ENSMUSG00000068270.15, intron 1 of 8) -3521 ENSMUSG00000068270.15 ENSMUSG00000068270 ENSMUST00000089520 Shroom4 protein_coding Interval_45422 chr13 55087635 55088411 + 0 NA intron (ENSMUSG00000025878.16, intron 2 of 13) protein_coding-intron (ENSMUSG00000025878.16, intron 2 of 14) 2246 ENSMUSG00000094446.1 ENSMUSG00000094446 ENSMUST00000075962 Gm6344 processed_pseudogene Interval_61269 chr15 80371716 80372984 + 0 NA exon (ENSMUSG00000022416.15, exon 17 of 37) protein_coding-exon (ENSMUSG00000022416.15, exon 17 of 37) -16978 ENSMUSG00000022416.15 ENSMUSG00000022416 ENSMUST00000160175 Cacna1i protein_coding Interval_48840 chr13 103962144 103962614 + 0 NA intron (ENSMUSG00000114276.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000114276.1, intron 1 of 1) 7745 ENSMUSG00000114276.1 ENSMUSG00000114276 ENSMUST00000225228 Gm47849 lincRNA Interval_104823 chr3 75517184 75518523 + 0 NA intron (ENSMUSG00000027835.11, intron 7 of 7) protein_coding-intron (ENSMUSG00000027835.11, intron 7 of 7) -35697 ENSMUSG00000104301.3 ENSMUSG00000104301 ENSMUST00000204982 Wdr49 protein_coding Interval_24527 chr11 34013772 34014327 + 0 NA intron (ENSMUSG00000085684.2, intron 4 of 4) protein_coding-intron (ENSMUSG00000085684.2, intron 4 of 4) -21061 ENSMUSG00000053519.17 ENSMUSG00000053519 ENSMUST00000135034 Kcnip1 protein_coding Interval_125261 chr5 65737248 65737959 + 0 NA Intergenic Intergenic 26263 ENSMUSG00000106978.1 ENSMUSG00000106978 ENSMUST00000202069 N4bp2os processed_transcript Interval_20059 chr10 112888357 112889115 + 0 NA Intergenic Intergenic -39765 ENSMUSG00000097185.1 ENSMUSG00000097185 ENSMUST00000180464 Gm26596 TEC Interval_143431 chr7 6753336 6753916 + 0 NA exon (ENSMUSG00000109416.1, exon 1 of 1) TEC-exon (ENSMUSG00000109416.1, exon 1 of 1) 583 ENSMUSG00000109416.1 ENSMUSG00000109416 ENSMUST00000207613 Gm44863 TEC Interval_131146 chr5 135420198 135420435 + 0 NA exon (ENSMUSG00000039959.13, exon 27 of 31) protein_coding-exon (ENSMUSG00000039959.13, exon 27 of 31) -25770 ENSMUSG00000053293.9 ENSMUSG00000053293 ENSMUST00000111171 Pom121 protein_coding Interval_17316 chr10 75818459 75818852 + 0 NA intron (ENSMUSG00000009093.7, intron 2 of 4) protein_coding-intron (ENSMUSG00000009093.7, intron 2 of 4) 3888 ENSMUSG00000009093.7 ENSMUSG00000009093 ENSMUST00000159241 Gstt4 protein_coding Interval_130824 chr5 131007779 131008754 + 0 NA intron (ENSMUSG00000034040.16, intron 5 of 5) protein_coding-intron (ENSMUSG00000034040.16, intron 5 of 10) 34704 ENSMUSG00000106729.1 ENSMUSG00000106729 ENSMUST00000200842 Gm43165 TEC Interval_87262 chr19 47264419 47264923 + 0 NA exon (ENSMUSG00000053617.12, exon 15 of 15) protein_coding-exon (ENSMUSG00000053617.12, exon 15 of 15) 8918 ENSMUSG00000098786.1 ENSMUSG00000098786 ENSMUST00000183658 Mir6995 miRNA Interval_9876 chr1 163698350 163698834 + 0 NA Intergenic Intergenic 26640 ENSMUSG00000040113.14 ENSMUSG00000040113 ENSMUST00000160495 Mettl11b protein_coding Interval_127727 chr5 107114685 107114929 + 0 NA intron (ENSMUSG00000029287.14, intron 14 of 14) protein_coding-intron (ENSMUSG00000029287.14, intron 16 of 16) 20881 ENSMUSG00000106643.1 ENSMUSG00000106643 ENSMUST00000199780 Gm43422 TEC Interval_152301 chr7 131567976 131568195 + 0 NA intron (ENSMUSG00000066979.6, intron 3 of 5) protein_coding-intron (ENSMUSG00000066979.6, intron 5 of 7) 7678 ENSMUSG00000066979.6 ENSMUSG00000066979 ENSMUST00000207442 Bub3 protein_coding Interval_131534 chr5 137785431 137788122 + 0 NA promoter-TSS (ENSMUSG00000029726.16) protein_coding-promoter-TSS (ENSMUSG00000029726.16) -85 ENSMUSG00000029726.16 ENSMUSG00000029726 ENSMUST00000196936 Mepce protein_coding Interval_170373 chr9 107533454 107534601 + 0 NA promoter-TSS (ENSMUSG00000010045.2) protein_coding-promoter-TSS (ENSMUSG00000010045.2) 82 ENSMUSG00000010045.2 ENSMUSG00000010045 ENSMUST00000010189 Tmem115 protein_coding Interval_123746 chr5 35131397 35132211 + 0 NA Intergenic Intergenic -29290 ENSMUSG00000029103.16 ENSMUSG00000029103 ENSMUST00000132754 Lrpap1 protein_coding Interval_110260 chr3 155069350 155069527 + 0 NA Intergenic Intergenic -14088 ENSMUSG00000040086.13 ENSMUSG00000040086 ENSMUST00000146952 Tnni3k protein_coding Interval_8078 chr1 135588163 135589541 + 0 NA intron (ENSMUSG00000054412.5, intron 1 of 5) antisense-intron (ENSMUSG00000054412.5, intron 1 of 5) 4079 ENSMUSG00000054412.5 ENSMUSG00000054412 ENSMUST00000067468 Gm4793 antisense Interval_36828 chr12 54465056 54465388 + 0 NA Intergenic Intergenic -34824 ENSMUSG00000114047.1 ENSMUSG00000114047 ENSMUST00000221935 Gm7557 processed_pseudogene Interval_67386 chr16 48268184 48268631 + 0 NA Intergenic Intergenic 6593 ENSMUSG00000116756.1 ENSMUSG00000116756 ENSMUST00000232184 Gm49770 processed_pseudogene Interval_42991 chr13 22474935 22475128 + 0 NA exon (ENSMUSG00000094898.2, exon 1 of 1) protein_coding-exon (ENSMUSG00000094898.2, exon 1 of 1) 3015 ENSMUSG00000094898.2 ENSMUSG00000094898 ENSMUST00000091730 Vmn1r201 protein_coding Interval_110449 chr3 158267405 158267815 + 0 NA intron (ENSMUSG00000028176.13, intron 7 of 24) protein_coding-intron (ENSMUSG00000028176.13, intron 8 of 27) -26804 ENSMUSG00000106448.1 ENSMUSG00000106448 ENSMUST00000196431 Gm43486 TEC Interval_121194 chr4 153943402 153943830 + 0 NA Intergenic Intergenic 6887 ENSMUSG00000086272.1 ENSMUSG00000086272 ENSMUST00000141582 BC039966 antisense Interval_23029 chr11 19092782 19093122 + 0 NA Intergenic Intergenic 24482 ENSMUSG00000102585.1 ENSMUSG00000102585 ENSMUST00000193150 Gm37439 TEC Interval_163475 chr9 21614938 21616798 + 0 NA promoter-TSS (ENSMUSG00000032187.16) protein_coding-promoter-TSS (ENSMUSG00000032187.16) -396 ENSMUSG00000032187.16 ENSMUSG00000032187 ENSMUST00000172996 Smarca4 protein_coding Interval_149618 chr7 100085212 100086664 + 0 NA intron (ENSMUSG00000030726.16, intron 7 of 7) protein_coding-intron (ENSMUSG00000030726.16, intron 11 of 11) 15522 ENSMUSG00000030726.16 ENSMUSG00000030726 ENSMUST00000156202 Pold3 protein_coding Interval_160723 chr8 111815191 111815587 + 0 NA intron (ENSMUSG00000031954.6, intron 5 of 6) protein_coding-intron (ENSMUSG00000031954.6, intron 5 of 6) 38902 ENSMUSG00000031954.6 ENSMUSG00000031954 ENSMUST00000034432 Cfdp1 protein_coding Interval_93111 chr2 70318018 70318560 + 0 NA intron (ENSMUSG00000042064.13, intron 28 of 33) protein_coding-intron (ENSMUSG00000042064.13, intron 29 of 34) -140693 ENSMUSG00000047965.9 ENSMUSG00000047965 ENSMUST00000140507 Rpl9-ps7 processed_pseudogene Interval_26650 chr11 59471495 59472822 + 0 NA intron (ENSMUSG00000054519.8, intron 1 of 3) protein_coding-intron (ENSMUSG00000054519.8, intron 1 of 3) 316 ENSMUSG00000054519.8 ENSMUSG00000054519 ENSMUST00000057799 Zfp867 protein_coding Interval_6792 chr1 119494494 119494891 + 0 NA intron (ENSMUSG00000004451.14, intron 1 of 1) protein_coding-intron (ENSMUSG00000004451.14, intron 1 of 4) -4785 ENSMUSG00000101437.1 ENSMUSG00000101437 ENSMUST00000190805 Gm29454 processed_pseudogene Interval_81155 chr18 55040524 55040864 + 0 NA intron (ENSMUSG00000096948.2, intron 1 of 4) antisense-intron (ENSMUSG00000096948.2, intron 1 of 4) 44963 ENSMUSG00000084521.1 ENSMUSG00000084521 ENSMUST00000122572 Gm24183 snoRNA Interval_108361 chr3 125766813 125767016 + 0 NA Intergenic Intergenic 56828 ENSMUSG00000027971.16 ENSMUSG00000027971 ENSMUST00000198101 Ndst4 protein_coding Interval_75964 chr17 73917843 73918315 + 0 NA intron (ENSMUSG00000024066.9, intron 2 of 3) protein_coding-intron (ENSMUSG00000024066.9, intron 14 of 35) 831 ENSMUSG00000024066.9 ENSMUSG00000024066 ENSMUST00000232957 Xdh protein_coding Interval_111586 chr4 23989699 23990013 + 0 NA Intergenic Intergenic -55902 ENSMUSG00000100395.1 ENSMUSG00000100395 ENSMUST00000188547 Gm28448 lincRNA Interval_137243 chr6 70696023 70696316 + 0 NA Intergenic Intergenic -2280 ENSMUSG00000095351.2 ENSMUSG00000095351 ENSMUST00000103403 Igkv3-2 IG_V_gene Interval_76568 chr17 81189492 81190615 + 0 NA Intergenic Intergenic 56685 ENSMUSG00000117496.1 ENSMUSG00000117496 ENSMUST00000234904 Gm50042 processed_pseudogene Interval_68907 chr16 88371907 88372420 + 0 NA intron (ENSMUSG00000116754.1, intron 2 of 2) lincRNA-intron (ENSMUSG00000116754.1, intron 2 of 2) -4446 ENSMUSG00000116885.1 ENSMUSG00000116885 ENSMUST00000231479 4930420G21Rik lincRNA Interval_130854 chr5 132621067 132621301 + 0 NA Intergenic Intergenic 75128 ENSMUSG00000105809.1 ENSMUSG00000105809 ENSMUST00000196866 Gm42626 lincRNA Interval_107514 chr3 108239419 108240362 + 0 NA promoter-TSS (ENSMUSG00000083462.1) processed_pseudogene-promoter-TSS (ENSMUSG00000083462.1) 21 ENSMUSG00000083462.1 ENSMUSG00000083462 ENSMUST00000119163 Gm12501 processed_pseudogene Interval_11984 chr1 188270534 188270893 + 0 NA intron (ENSMUSG00000026609.15, intron 2 of 4) protein_coding-intron (ENSMUSG00000026609.15, intron 2 of 70) 8690 ENSMUSG00000026609.15 ENSMUSG00000026609 ENSMUST00000127077 Ush2a protein_coding Interval_67434 chr16 48613688 48614321 + 0 NA intron (ENSMUSG00000022652.7, intron 2 of 5) protein_coding-intron (ENSMUSG00000022652.7, intron 21 of 26) 134372 ENSMUSG00000022652.7 ENSMUSG00000022652 ENSMUST00000232195 Morc1 protein_coding Interval_138917 chr6 93534288 93534507 + 0 NA Intergenic Intergenic 24824 ENSMUSG00000088630.1 ENSMUSG00000088630 ENSMUST00000158005 Gm22312 snoRNA Interval_90550 chr2 31101073 31101645 + 0 NA intron (ENSMUSG00000075415.13, intron 2 of 6) protein_coding-intron (ENSMUSG00000075415.13, intron 2 of 13) 14953 ENSMUSG00000075415.13 ENSMUSG00000075415 ENSMUST00000136085 Fnbp1 protein_coding Interval_80046 chr18 36945987 36946711 + 0 NA exon (ENSMUSG00000102312.1, exon 1 of 4) protein_coding-exon (ENSMUSG00000102312.1, exon 1 of 4) 244 ENSMUSG00000102312.1 ENSMUSG00000102312 ENSMUST00000192503 Pcdha3 protein_coding Interval_72992 chr17 34022493 34022942 + 0 NA exon (ENSMUSG00000024325.8, exon 2 of 3) protein_coding-exon (ENSMUSG00000024325.8, exon 2 of 3) 1215 ENSMUSG00000024325.8 ENSMUSG00000024325 ENSMUST00000172739 Ring1 protein_coding Interval_63528 chr15 101786133 101786519 + 0 NA exon (ENSMUSG00000056605.7, exon 1 of 9) protein_coding-exon (ENSMUSG00000056605.7, exon 1 of 9) -7633 ENSMUSG00000056605.7 ENSMUSG00000056605 ENSMUST00000127671 Krt72 protein_coding Interval_102910 chr3 32728031 32728420 + 0 NA intron (ENSMUSG00000037531.8, intron 4 of 4) protein_coding-intron (ENSMUSG00000037531.8, intron 6 of 6) -6136 ENSMUSG00000103590.1 ENSMUSG00000103590 ENSMUST00000194497 Gm37353 TEC Interval_26082 chr11 54026652 54029122 + 0 NA promoter-TSS (ENSMUSG00000020334.6) protein_coding-promoter-TSS (ENSMUSG00000020334.6) 65 ENSMUSG00000020334.6 ENSMUSG00000020334 ENSMUST00000154369 Slc22a4 protein_coding Interval_174486 chrX 153323123 153323333 + 0 NA intron (ENSMUSG00000041649.13, intron 2 of 6) protein_coding-intron (ENSMUSG00000041649.13, intron 2 of 6) 80842 ENSMUSG00000080743.2 ENSMUSG00000080743 ENSMUST00000122032 Gm7150 processed_pseudogene Interval_67207 chr16 44423441 44423705 + 0 NA intron (ENSMUSG00000071550.14, intron 13 of 13) protein_coding-intron (ENSMUSG00000071550.14, intron 17 of 34) 28777 ENSMUSG00000071550.14 ENSMUSG00000071550 ENSMUST00000127303 Cfap44 protein_coding Interval_139583 chr6 101650599 101651003 + 0 NA Intergenic Intergenic -1433 ENSMUSG00000107738.1 ENSMUSG00000107738 ENSMUST00000204183 Gm32453 processed_pseudogene Interval_131675 chr5 139214751 139215559 + 0 NA TTS (ENSMUSG00000106127.1) antisense-TTS (ENSMUSG00000106127.1) 1201 ENSMUSG00000106127.1 ENSMUSG00000106127 ENSMUST00000196947 4930520M14Rik antisense Interval_123563 chr5 33506777 33507005 + 0 NA Intergenic Intergenic -69427 ENSMUSG00000107248.1 ENSMUSG00000107248 ENSMUST00000200726 Gm43851 lincRNA Interval_15501 chr10 49788226 49789228 + 0 NA promoter-TSS (ENSMUSG00000111934.1) TEC-promoter-TSS (ENSMUSG00000111934.1) -100 ENSMUSG00000111934.1 ENSMUSG00000111934 ENSMUST00000218448 Gm48123 TEC Interval_22156 chr11 6692571 6692847 + 0 NA Intergenic Intergenic 6885 ENSMUSG00000083075.1 ENSMUSG00000083075 ENSMUST00000121445 Gm11980 processed_pseudogene Interval_48680 chr13 101103090 101103295 + 0 NA Intergenic Intergenic -63946 ENSMUSG00000096722.2 ENSMUSG00000096722 ENSMUST00000179479 Hmgb1-ps9 processed_pseudogene Interval_148861 chr7 89391784 89392239 + 0 NA promoter-TSS (ENSMUSG00000109199.1) TEC-promoter-TSS (ENSMUSG00000109199.1) -688 ENSMUSG00000109199.1 ENSMUSG00000109199 ENSMUST00000208787 Gm44996 TEC Interval_48915 chr13 104791749 104792391 + 0 NA promoter-TSS (ENSMUSG00000021716.14) protein_coding-promoter-TSS (ENSMUSG00000021716.14) 25072 ENSMUSG00000021715.12 ENSMUSG00000021715 ENSMUST00000154165 Cwc27 protein_coding Interval_97925 chr2 145809920 145811362 + 0 NA intron (ENSMUSG00000001768.16, intron 1 of 2) protein_coding-intron (ENSMUSG00000001768.16, intron 2 of 12) -67645 ENSMUSG00000092758.1 ENSMUSG00000092758 ENSMUST00000175017 Gm25026 miRNA Interval_8381 chr1 138560945 138561402 + 0 NA intron (ENSMUSG00000026393.10, intron 2 of 6) protein_coding-intron (ENSMUSG00000026393.10, intron 2 of 7) -6465 ENSMUSG00000102651.1 ENSMUSG00000102651 ENSMUST00000194804 Gm37080 TEC Interval_64720 chr16 14450510 14450740 + 0 NA intron (ENSMUSG00000023088.17, intron 19 of 30) protein_coding-intron (ENSMUSG00000023088.17, intron 19 of 30) 33121 ENSMUSG00000116439.1 ENSMUSG00000116439 ENSMUST00000231182 Gm49528 unprocessed_pseudogene Interval_87947 chr19 57323226 57324022 + 0 NA promoter-TSS (ENSMUSG00000117670.1) lincRNA-promoter-TSS (ENSMUSG00000117670.1) 22 ENSMUSG00000117670.1 ENSMUSG00000117670 ENSMUST00000235809 Gm50270 lincRNA Interval_84912 chr19 18719409 18720953 + 0 NA Intergenic Intergenic 6988 ENSMUSG00000047044.7 ENSMUSG00000047044 ENSMUST00000055792 D030056L22Rik protein_coding Interval_107013 chr3 102970195 102970651 + 0 NA Intergenic Intergenic -12040 ENSMUSG00000048938.12 ENSMUSG00000048938 ENSMUST00000196135 Nr1h5 protein_coding Interval_82615 chr18 75441522 75442836 + 0 NA intron (ENSMUSG00000052928.9, intron 10 of 11) protein_coding-intron (ENSMUSG00000052928.9, intron 10 of 11) -72466 ENSMUSG00000097712.1 ENSMUSG00000097712 ENSMUST00000181913 Gm10532 antisense Interval_38616 chr12 80574716 80575621 + 0 NA intron (ENSMUSG00000021130.8, intron 3 of 15) protein_coding-intron (ENSMUSG00000021130.8, intron 2 of 14) 21972 ENSMUSG00000112421.1 ENSMUSG00000112421 ENSMUST00000220065 4933406B15Rik antisense Interval_128695 chr5 114764982 114765617 + 0 NA TTS (ENSMUSG00000041890.17) protein_coding-TTS (ENSMUSG00000041890.17) -3608 ENSMUSG00000041890.17 ENSMUSG00000041890 ENSMUST00000133096 Git2 protein_coding Interval_137563 chr6 73247546 73249235 + 0 NA promoter-TSS (ENSMUSG00000052738.14) protein_coding-promoter-TSS (ENSMUSG00000052738.14) -270 ENSMUSG00000052738.14 ENSMUSG00000052738 ENSMUST00000173409 Suclg1 protein_coding Interval_29333 chr11 83237195 83237697 + 0 NA intron (ENSMUSG00000083161.2, intron 2 of 4) transcribed_unprocessed_pseudogene-intron (ENSMUSG00000083161.2, intron 2 of 4) 12992 ENSMUSG00000083161.2 ENSMUSG00000083161 ENSMUST00000215482 Gm11427 transcribed_unprocessed_pseudogene Interval_118142 chr4 129206036 129206402 + 0 NA intron (ENSMUSG00000028811.12, intron 3 of 4) protein_coding-intron (ENSMUSG00000028811.12, intron 5 of 12) -6025 ENSMUSG00000028811.12 ENSMUSG00000028811 ENSMUST00000147248 Yars protein_coding Interval_160338 chr8 108573876 108574824 + 0 NA intron (ENSMUSG00000110613.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000110613.1, intron 1 of 1) 10245 ENSMUSG00000110613.1 ENSMUSG00000110613 ENSMUST00000211953 Lncbate1 lincRNA Interval_102496 chr3 27207231 27207661 + 0 NA exon (ENSMUSG00000027698.14, exon 2 of 3) protein_coding-exon (ENSMUSG00000027698.14, exon 2 of 3) 19005 ENSMUSG00000027698.14 ENSMUSG00000027698 ENSMUST00000140872 Nceh1 protein_coding Interval_34892 chr12 13036862 13037212 + 0 NA Intergenic Intergenic 17692 ENSMUSG00000113928.1 ENSMUSG00000113928 ENSMUST00000220969 Gm48209 lincRNA Interval_21626 chr11 3313819 3314732 + 0 NA intron (ENSMUSG00000084941.1, intron 3 of 5) processed_transcript-intron (ENSMUSG00000084941.1, intron 3 of 5) 5279 ENSMUSG00000084941.1 ENSMUSG00000084941 ENSMUST00000152576 Gm11944 processed_transcript Interval_161505 chr8 120800421 120800936 + 0 NA intron (ENSMUSG00000092329.1, intron 1 of 15) protein_coding-intron (ENSMUSG00000092329.1, intron 1 of 15) 64319 ENSMUSG00000041515.10 ENSMUSG00000041515 ENSMUST00000160594 Irf8 protein_coding Interval_142415 chr6 141778055 141778273 + 0 NA Intergenic Intergenic -4354 ENSMUSG00000084927.1 ENSMUSG00000084927 ENSMUST00000148411 Gm5724 protein_coding Interval_96174 chr2 120294446 120294665 + 0 NA Intergenic Intergenic -5358 ENSMUSG00000070719.4 ENSMUSG00000070719 ENSMUST00000094665 Pla2g4d protein_coding Interval_140391 chr6 117810646 117812091 + 0 NA Intergenic Intergenic 2648 ENSMUSG00000071237.4 ENSMUSG00000071237 ENSMUST00000120444 Gemin6-ps processed_pseudogene Interval_76690 chr17 83513782 83514827 + 0 NA promoter-TSS (ENSMUSG00000024248.14) protein_coding-promoter-TSS (ENSMUSG00000024248.14) -9798 ENSMUSG00000024248.14 ENSMUSG00000024248 ENSMUST00000234258 Cox7a2l protein_coding Interval_106721 chr3 99938624 99939333 + 0 NA intron (ENSMUSG00000027867.10, intron 1 of 48) protein_coding-intron (ENSMUSG00000027867.10, intron 1 of 3) 53561 ENSMUSG00000027867.10 ENSMUSG00000027867 ENSMUST00000143050 Spag17 protein_coding Interval_132456 chr5 145068714 145068981 + 0 NA intron (ENSMUSG00000038770.17, intron 4 of 7) protein_coding-intron (ENSMUSG00000038770.17, intron 4 of 7) 1330 ENSMUSG00000118480.1 ENSMUSG00000118480 ENSMUST00000238523 Gm50458 unitary_pseudogene Interval_141529 chr6 128889492 128889706 + 0 NA intron (ENSMUSG00000030365.11, intron 2 of 6) protein_coding-intron (ENSMUSG00000030365.11, intron 1 of 5) 1525 ENSMUSG00000090164.8 ENSMUSG00000090164 ENSMUST00000178918 BC035044 protein_coding Interval_3882 chr1 64302898 64303476 + 0 NA promoter-TSS (ENSMUSG00000101895.1) lincRNA-promoter-TSS (ENSMUSG00000101895.1) -144 ENSMUSG00000101895.1 ENSMUSG00000101895 ENSMUST00000190863 Gm28981 lincRNA Interval_23162 chr11 20242755 20243729 + 0 NA intron (ENSMUSG00000044066.14, intron 1 of 2) protein_coding-intron (ENSMUSG00000044066.14, intron 1 of 6) 6187 ENSMUSG00000044066.14 ENSMUSG00000044066 ENSMUST00000161218 Cep68 protein_coding Interval_151377 chr7 121947598 121948108 + 0 NA intron (ENSMUSG00000034951.10, intron 9 of 16) protein_coding-intron (ENSMUSG00000034951.10, intron 9 of 16) -33908 ENSMUSG00000108511.1 ENSMUSG00000108511 ENSMUST00000206578 Gm44987 antisense Interval_118449 chr4 131694243 131694743 + 0 NA TTS (ENSMUSG00000086856.1) lincRNA-TTS (ENSMUSG00000086856.1) 16015 ENSMUSG00000086856.1 ENSMUSG00000086856 ENSMUST00000152128 Gm16080 lincRNA Interval_151572 chr7 123971631 123972179 + 0 NA intron (ENSMUSG00000098129.1, intron 3 of 3) antisense-intron (ENSMUSG00000098129.1, intron 3 of 3) -4020 ENSMUSG00000098160.3 ENSMUSG00000098160 ENSMUST00000194314 Gm26974 processed_transcript Interval_172091 chrX 7320515 7320846 + 0 NA Intergenic Intergenic 55146 ENSMUSG00000046269.17 ENSMUSG00000046269 ENSMUST00000115744 Usp27x protein_coding Interval_154839 chr8 24181472 24181769 + 0 NA intron (ENSMUSG00000053979.4, intron 1 of 1) lincRNA-intron (ENSMUSG00000053979.4, intron 1 of 1) 7716 ENSMUSG00000053979.4 ENSMUSG00000053979 ENSMUST00000066740 A730045E13Rik lincRNA Interval_151809 chr7 126791865 126792949 + 0 NA promoter-TSS (ENSMUSG00000030697.7) protein_coding-promoter-TSS (ENSMUSG00000030697.7) -67 ENSMUSG00000030697.7 ENSMUSG00000030697 ENSMUST00000205879 Ppp4c protein_coding Interval_99809 chr2 165055063 165056155 + 0 NA promoter-TSS (ENSMUSG00000017652.16) protein_coding-promoter-TSS (ENSMUSG00000017652.16) -95 ENSMUSG00000017652.16 ENSMUSG00000017652 ENSMUST00000153105 Cd40 protein_coding Interval_100164 chr2 167429198 167429848 + 0 NA intron (ENSMUSG00000039463.14, intron 2 of 16) protein_coding-intron (ENSMUSG00000039463.14, intron 2 of 16) -21532 ENSMUSG00000039463.14 ENSMUSG00000039463 ENSMUST00000148454 Slc9a8 protein_coding Interval_41470 chr12 114764271 114765188 + 0 NA exon (ENSMUSG00000103290.1, exon 2 of 2) IG_V_gene-exon (ENSMUSG00000103290.1, exon 2 of 2) 154 ENSMUSG00000103290.1 ENSMUSG00000103290 ENSMUST00000194625 Ighv1-23 IG_V_gene Interval_154889 chr8 24823532 24824542 + 0 NA promoter-TSS (ENSMUSG00000031554.18) protein_coding-promoter-TSS (ENSMUSG00000031554.18) 29 ENSMUSG00000031554.18 ENSMUSG00000031554 ENSMUST00000118419 Adam5 protein_coding Interval_118539 chr4 132356181 132356929 + 0 NA exon (ENSMUSG00000066043.13, exon 13 of 13) protein_coding-exon (ENSMUSG00000066043.13, exon 13 of 13) -2892 ENSMUSG00000085241.7 ENSMUSG00000085241 ENSMUST00000136127 Snhg3 processed_transcript Interval_157592 chr8 71591337 71592859 + 0 NA promoter-TSS (ENSMUSG00000031807.10) protein_coding-promoter-TSS (ENSMUSG00000031807.10) -193 ENSMUSG00000031807.10 ENSMUSG00000031807 ENSMUST00000143441 Pgls protein_coding Interval_71928 chr17 27055989 27057856 + 0 NA promoter-TSS (ENSMUSG00000042644.9) protein_coding-promoter-TSS (ENSMUSG00000042644.9) -5508 ENSMUSG00000117799.1 ENSMUSG00000117799 ENSMUST00000236359 Gm50295 lincRNA Interval_56829 chr14 122312441 122312893 + 0 NA intron (ENSMUSG00000025545.10, intron 2 of 7) protein_coding-intron (ENSMUSG00000025545.10, intron 2 of 7) 54626 ENSMUSG00000025545.10 ENSMUSG00000025545 ENSMUST00000226136 Clybl protein_coding Interval_22567 chr11 11828416 11829759 + 0 NA intron (ENSMUSG00000020182.16, intron 10 of 14) protein_coding-intron (ENSMUSG00000020182.16, intron 10 of 14) -20125 ENSMUSG00000035455.12 ENSMUSG00000035455 ENSMUST00000150714 Fignl1 protein_coding Interval_46765 chr13 70073583 70075715 + 0 NA intron (ENSMUSG00000113074.1, intron 2 of 2) lincRNA-intron (ENSMUSG00000113074.1, intron 2 of 2) 13091 ENSMUSG00000112998.1 ENSMUSG00000112998 ENSMUST00000221477 Gm47656 TEC Interval_137691 chr6 79425215 79425882 + 0 NA Intergenic Intergenic -115660 ENSMUSG00000107618.1 ENSMUSG00000107618 ENSMUST00000204707 Gm6261 processed_pseudogene Interval_166945 chr9 64078117 64078798 + 0 NA Intergenic Intergenic -2304 ENSMUSG00000093759.1 ENSMUSG00000093759 ENSMUST00000176950 Scarletltr processed_transcript Interval_18003 chr10 81314179 81314470 + 0 NA TTS (ENSMUSG00000034902.17) protein_coding-TTS (ENSMUSG00000034902.17) -9178 ENSMUSG00000034889.8 ENSMUSG00000034889 ENSMUST00000219285 Cactin protein_coding Interval_124092 chr5 38219837 38220991 + 0 NA promoter-TSS (ENSMUSG00000067367.9) protein_coding-promoter-TSS (ENSMUSG00000067367.9) -114 ENSMUSG00000067367.9 ENSMUSG00000067367 ENSMUST00000131492 Lyar protein_coding Interval_15355 chr10 45051059 45051856 + 0 NA Intergenic Intergenic -15746 ENSMUSG00000019849.11 ENSMUSG00000019849 ENSMUST00000099858 Prep protein_coding Interval_100323 chr2 168395606 168395922 + 0 NA Intergenic Intergenic 22810 ENSMUSG00000082239.1 ENSMUSG00000082239 ENSMUST00000119539 Gm14234 processed_pseudogene Interval_48962 chr13 106185791 106186071 + 0 NA Intergenic Intergenic 11840 ENSMUSG00000108515.1 ENSMUSG00000108515 ENSMUST00000205589 Olfr717-ps1 unprocessed_pseudogene Interval_90139 chr2 28469494 28471384 + 0 NA exon (ENSMUSG00000035772.11, exon 4 of 4) protein_coding-exon (ENSMUSG00000035772.11, exon 4 of 4) 2349 ENSMUSG00000035772.11 ENSMUSG00000035772 ENSMUST00000146332 Mrps2 protein_coding Interval_22854 chr11 16760921 16761491 + 0 NA intron (ENSMUSG00000020122.16, intron 1 of 15) protein_coding-intron (ENSMUSG00000020122.16, intron 1 of 27) 8976 ENSMUSG00000020122.16 ENSMUSG00000020122 ENSMUST00000138518 Egfr protein_coding Interval_58543 chr15 35937320 35938286 + 0 NA promoter-TSS (ENSMUSG00000014313.15) protein_coding-promoter-TSS (ENSMUSG00000014313.15) -634 ENSMUSG00000014313.15 ENSMUSG00000014313 ENSMUST00000227231 Cox6c protein_coding Interval_54959 chr14 76494271 76495782 + 0 NA intron (ENSMUSG00000022010.19, intron 1 of 2) protein_coding-intron (ENSMUSG00000022010.19, intron 1 of 2) -31566 ENSMUSG00000115092.1 ENSMUSG00000115092 ENSMUST00000227784 E130202H07Rik lincRNA Interval_10191 chr1 166987486 166988114 + 0 NA intron (ENSMUSG00000102548.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000102548.1, intron 1 of 2) 11928 ENSMUSG00000102548.1 ENSMUSG00000102548 ENSMUST00000180995 Gm16701 lincRNA Interval_17364 chr10 76086971 76087265 + 0 NA intron (ENSMUSG00000020226.9, intron 7 of 14) protein_coding-intron (ENSMUSG00000020226.9, intron 7 of 14) 8501 ENSMUSG00000086798.1 ENSMUSG00000086798 ENSMUST00000124320 Gm16222 antisense Interval_36721 chr12 52496707 52497706 + 0 NA intron (ENSMUSG00000112437.1, intron 3 of 3) lincRNA-intron (ENSMUSG00000112437.1, intron 3 of 3) -6810 ENSMUSG00000035133.9 ENSMUSG00000035133 ENSMUST00000110725 Arhgap5 protein_coding Interval_19051 chr10 94087292 94087748 + 0 NA intron (ENSMUSG00000020021.4, intron 2 of 2) protein_coding-intron (ENSMUSG00000020021.4, intron 3 of 20) 10620 ENSMUSG00000110753.1 ENSMUSG00000110753 ENSMUST00000217189 Gm18391 processed_pseudogene Interval_34451 chr12 4243375 4243733 + 0 NA intron (ENSMUSG00000111916.1, intron 1 of 2) antisense-intron (ENSMUSG00000111916.1, intron 1 of 2) 2421 ENSMUSG00000111916.1 ENSMUSG00000111916 ENSMUST00000220337 4921501I09Rik antisense Interval_96757 chr2 127783390 127783646 + 0 NA intron (ENSMUSG00000027378.16, intron 1 of 19) protein_coding-intron (ENSMUSG00000027378.16, intron 1 of 19) 8970 ENSMUSG00000051319.6 ENSMUSG00000051319 ENSMUST00000135091 Mtln protein_coding Interval_3921 chr1 64793475 64793989 + 0 NA TTS (ENSMUSG00000051344.13) protein_coding-TTS (ENSMUSG00000051344.13) 43032 ENSMUSG00000051344.13 ENSMUSG00000051344 ENSMUST00000134097 Plekhm3 protein_coding Interval_139055 chr6 94630637 94632102 + 0 NA intron (ENSMUSG00000030029.14, intron 3 of 19) protein_coding-intron (ENSMUSG00000030029.14, intron 3 of 19) -24954 ENSMUSG00000098531.1 ENSMUSG00000098531 ENSMUST00000183891 Mir7041 miRNA Interval_154409 chr8 15830251 15831210 + 0 NA Intergenic Intergenic -46934 ENSMUSG00000109757.1 ENSMUSG00000109757 ENSMUST00000211639 Gm7128 processed_pseudogene Interval_91326 chr2 37786271 37787293 + 0 NA exon (ENSMUSG00000035403.10, exon 4 of 13) protein_coding-exon (ENSMUSG00000035403.10, exon 4 of 13) -4389 ENSMUSG00000035403.10 ENSMUSG00000035403 ENSMUST00000137693 Crb2 protein_coding Interval_75355 chr17 66092651 66092944 + 0 NA promoter-TSS (ENSMUSG00000024099.15) protein_coding-promoter-TSS (ENSMUSG00000024099.15) -2136 ENSMUSG00000117321.1 ENSMUSG00000117321 ENSMUST00000233843 Gm49927 processed_pseudogene Interval_146182 chr7 44568663 44569222 + 0 NA Intergenic Intergenic -13412 ENSMUSG00000002204.9 ENSMUSG00000002204 ENSMUST00000207302 Napsa protein_coding Interval_161386 chr8 120152313 120153330 + 0 NA TTS (ENSMUSG00000031824.15) protein_coding-TTS (ENSMUSG00000031824.15) 24542 ENSMUSG00000042269.15 ENSMUSG00000042269 ENSMUST00000142478 Fam92b protein_coding Interval_106468 chr3 96547173 96547923 + 0 NA Intergenic Intergenic -11963 ENSMUSG00000038393.14 ENSMUSG00000038393 ENSMUST00000128221 Txnip protein_coding Interval_12651 chr10 4151309 4151595 + 0 NA intron (ENSMUSG00000040675.17, intron 27 of 27) protein_coding-intron (ENSMUSG00000040675.17, intron 27 of 27) -18435 ENSMUSG00000089473.1 ENSMUSG00000089473 ENSMUST00000158848 Gm25369 snoRNA Interval_82187 chr18 68570868 68571140 + 0 NA Intergenic Intergenic -2260 ENSMUSG00000118041.1 ENSMUSG00000118041 ENSMUST00000236766 Gm50259 processed_pseudogene Interval_38089 chr12 75583982 75584398 + 0 NA intron (ENSMUSG00000021051.10, intron 2 of 12) protein_coding-intron (ENSMUSG00000021051.10, intron 2 of 13) 4325 ENSMUSG00000112459.1 ENSMUSG00000112459 ENSMUST00000219909 Gm47689 antisense Interval_42265 chr13 11304490 11304685 + 0 NA Intergenic Intergenic 122311 ENSMUSG00000077618.1 ENSMUSG00000077618 ENSMUST00000104430 Gm25496 snoRNA Interval_172532 chrX 35855225 35855633 + 0 NA Intergenic Intergenic 17302 ENSMUSG00000087847.1 ENSMUSG00000087847 ENSMUST00000157222 Gm25624 scaRNA Interval_144158 chr7 19700552 19702044 + 0 NA TTS (ENSMUSG00000002984.17) protein_coding-TTS (ENSMUSG00000002984.17) 2279 ENSMUSG00000002984.17 ENSMUSG00000002984 ENSMUST00000173966 Tomm40 protein_coding Interval_95032 chr2 103338632 103339154 + 0 NA exon (ENSMUSG00000087278.1, exon 3 of 3) lincRNA-exon (ENSMUSG00000087278.1, exon 3 of 3) 25845 ENSMUSG00000102686.1 ENSMUSG00000102686 ENSMUST00000195179 Gm37220 TEC Interval_34233 chr11 121485612 121485870 + 0 NA intron (ENSMUSG00000039230.14, intron 7 of 38) protein_coding-intron (ENSMUSG00000039230.14, intron 7 of 38) 33592 ENSMUSG00000039238.6 ENSMUSG00000039238 ENSMUST00000092298 Zfp750 protein_coding Interval_66994 chr16 39117510 39118323 + 0 NA Intergenic Intergenic 70990 ENSMUSG00000116965.1 ENSMUSG00000116965 ENSMUST00000231748 Gm36742 lincRNA Interval_35042 chr12 16830866 16831784 + 0 NA intron (ENSMUSG00000057469.8, intron 9 of 9) protein_coding-intron (ENSMUSG00000057469.8, intron 9 of 9) 11064 ENSMUSG00000057469.8 ENSMUSG00000057469 ENSMUST00000221600 E2f6 protein_coding Interval_114331 chr4 73444788 73445445 + 0 NA Intergenic Intergenic -21797 ENSMUSG00000082566.1 ENSMUSG00000082566 ENSMUST00000120048 Gm11485 processed_pseudogene Interval_158565 chr8 84539087 84540219 + 0 NA intron (ENSMUSG00000034656.18, intron 12 of 48) protein_coding-intron (ENSMUSG00000034656.18, intron 10 of 46) 77531 ENSMUSG00000086067.1 ENSMUSG00000086067 ENSMUST00000127527 Gm16183 antisense Interval_172342 chrX 13224939 13225402 + 0 NA Intergenic Intergenic -6568 ENSMUSG00000083364.4 ENSMUSG00000083364 ENSMUST00000122000 Llph-ps2 processed_pseudogene Interval_147155 chr7 63904122 63904350 + 0 NA intron (ENSMUSG00000052040.10, intron 1 of 1) protein_coding-intron (ENSMUSG00000052040.10, intron 1 of 1) 6262 ENSMUSG00000098708.7 ENSMUSG00000098708 ENSMUST00000184360 Gm27252 processed_transcript Interval_6862 chr1 120171123 120172100 + 0 NA intron (ENSMUSG00000026388.15, intron 5 of 5) protein_coding-intron (ENSMUSG00000026388.15, intron 4 of 4) 21012 ENSMUSG00000026388.15 ENSMUSG00000026388 ENSMUST00000128578 3110009E18Rik protein_coding Interval_14571 chr10 36135920 36136567 + 0 NA Intergenic Intergenic 40367 ENSMUSG00000110987.1 ENSMUSG00000110987 ENSMUST00000215218 Gm47048 processed_pseudogene Interval_38761 chr12 82072581 82072903 + 0 NA Intergenic Intergenic 72474 ENSMUSG00000113622.1 ENSMUSG00000113622 ENSMUST00000223212 Gm49749 lincRNA Interval_114605 chr4 83058435 83058962 + 0 NA Intergenic Intergenic -6531 ENSMUSG00000059049.14 ENSMUSG00000059049 ENSMUST00000131102 Frem1 protein_coding Interval_149591 chr7 99891997 99892251 + 0 NA intron (ENSMUSG00000035211.9, intron 7 of 9) protein_coding-intron (ENSMUSG00000035211.9, intron 8 of 18) -2789 ENSMUSG00000109002.1 ENSMUSG00000109002 ENSMUST00000208321 Gm38405 antisense Interval_145731 chr7 37893881 37894177 + 0 NA Intergenic Intergenic -69682 ENSMUSG00000064591.1 ENSMUSG00000064591 ENSMUST00000082657 Gm22302 snRNA Interval_149353 chr7 97647323 97648293 + 0 NA intron (ENSMUSG00000035623.14, intron 4 of 14) protein_coding-intron (ENSMUSG00000035623.14, intron 4 of 15) -2696 ENSMUSG00000086433.1 ENSMUSG00000086433 ENSMUST00000126902 Rsf1os1 antisense Interval_98102 chr2 148072877 148073107 + 0 NA Intergenic Intergenic -1153 ENSMUSG00000083750.1 ENSMUSG00000083750 ENSMUST00000122234 Gm14108 processed_pseudogene Interval_20713 chr10 120432391 120433058 + 0 NA intron (ENSMUSG00000056758.14, intron 3 of 5) protein_coding-intron (ENSMUSG00000056758.14, intron 3 of 4) 15386 ENSMUSG00000076448.1 ENSMUSG00000076448 ENSMUST00000103249 Mir763 miRNA Interval_121191 chr4 153922310 153922537 + 0 NA Intergenic Intergenic 15037 ENSMUSG00000085390.1 ENSMUSG00000085390 ENSMUST00000156438 Gm13115 lincRNA Interval_114035 chr4 62645694 62647133 + 0 NA intron (ENSMUSG00000059810.18, intron 2 of 9) protein_coding-intron (ENSMUSG00000059810.18, intron 17 of 19) -12701 ENSMUSG00000085177.1 ENSMUSG00000085177 ENSMUST00000130206 Gm11209 antisense Interval_65106 chr16 19375948 19376167 + 0 NA Intergenic Intergenic 32021 ENSMUSG00000050158.7 ENSMUSG00000050158 ENSMUST00000206410 Olfr165 protein_coding Interval_123425 chr5 32434353 32434742 + 0 NA Intergenic Intergenic 14544 ENSMUSG00000107211.1 ENSMUSG00000107211 ENSMUST00000202263 Gm5864 processed_pseudogene Interval_138075 chr6 85002854 85003836 + 0 NA intron (ENSMUSG00000033769.16, intron 2 of 13) protein_coding-intron (ENSMUSG00000033769.16, intron 3 of 16) -59229 ENSMUSG00000107629.1 ENSMUSG00000107629 ENSMUST00000203336 Gm44011 processed_pseudogene Interval_62125 chr15 87543409 87543672 + 0 NA promoter-TSS (ENSMUSG00000054863.9) protein_coding-promoter-TSS (ENSMUSG00000054863.9) -759 ENSMUSG00000054863.9 ENSMUSG00000054863 ENSMUST00000068088 Tafa5 protein_coding Interval_26719 chr11 59963893 59965668 + 0 NA exon (ENSMUSG00000049892.7, exon 1 of 2) protein_coding-exon (ENSMUSG00000049892.7, exon 1 of 2) 164 ENSMUSG00000049892.7 ENSMUSG00000049892 ENSMUST00000062405 Rasd1 protein_coding Interval_106094 chr3 92998513 92999507 + 0 NA Intergenic Intergenic 6784 ENSMUSG00000068885.4 ENSMUSG00000068885 ENSMUST00000090863 Lce3f protein_coding Interval_122996 chr5 28269438 28270432 + 0 NA Intergenic Intergenic -24129 ENSMUSG00000044681.19 ENSMUSG00000044681 ENSMUST00000141196 Cnpy1 protein_coding Interval_164134 chr9 31858264 31859234 + 0 NA exon (ENSMUSG00000032033.11, exon 2 of 4) protein_coding-exon (ENSMUSG00000032033.11, exon 2 of 4) -47244 ENSMUSG00000110813.1 ENSMUSG00000110813 ENSMUST00000216981 Gm31497 antisense Interval_114029 chr4 62621749 62622378 + 0 NA intron (ENSMUSG00000059810.18, intron 1 of 10) protein_coding-intron (ENSMUSG00000059810.18, intron 10 of 19) -1646 ENSMUSG00000059810.18 ENSMUSG00000059810 ENSMUST00000153875 Rgs3 protein_coding Interval_105319 chr3 84875095 84876008 + 0 NA exon (ENSMUSG00000102919.1, exon 1 of 1) TEC-exon (ENSMUSG00000102919.1, exon 1 of 1) 1660 ENSMUSG00000102919.1 ENSMUSG00000102919 ENSMUST00000193246 Gm37726 TEC Interval_54489 chr14 70191465 70192542 + 0 NA intron (ENSMUSG00000022091.6, intron 14 of 21) protein_coding-intron (ENSMUSG00000022091.6, intron 12 of 20) -13321 ENSMUSG00000115186.1 ENSMUSG00000115186 ENSMUST00000226259 Gm49417 antisense Interval_97701 chr2 142935263 142935707 + 0 NA Intergenic Intergenic 32520 ENSMUSG00000086504.1 ENSMUSG00000086504 ENSMUST00000124774 Kif16bos antisense Interval_73990 chr17 45885913 45887465 + 0 NA exon (ENSMUSG00000117048.1, exon 1 of 2) lincRNA-exon (ENSMUSG00000117048.1, exon 1 of 2) 1343 ENSMUSG00000117048.1 ENSMUSG00000117048 ENSMUST00000233085 Gm41584 lincRNA Interval_99137 chr2 157423984 157424701 + 0 NA promoter-TSS (ENSMUSG00000027646.15) protein_coding-promoter-TSS (ENSMUSG00000027646.15) 226 ENSMUSG00000027646.15 ENSMUSG00000027646 ENSMUST00000109529 Src protein_coding Interval_135005 chr6 34494353 34494722 + 0 NA intron (ENSMUSG00000038871.5, intron 2 of 2) protein_coding-intron (ENSMUSG00000038871.5, intron 2 of 2) 17395 ENSMUSG00000038871.5 ENSMUSG00000038871 ENSMUST00000149131 Bpgm protein_coding Interval_78329 chr18 12017335 12018133 + 0 NA intron (ENSMUSG00000049411.15, intron 14 of 15) protein_coding-intron (ENSMUSG00000049411.15, intron 11 of 12) 103746 ENSMUSG00000049411.15 ENSMUSG00000049411 ENSMUST00000234833 Tmem241 protein_coding Interval_8462 chr1 139586563 139587797 + 0 NA intron (ENSMUSG00000090623.3, intron 5 of 5) unprocessed_pseudogene-intron (ENSMUSG00000090623.3, intron 5 of 5) -33581 ENSMUSG00000057037.8 ENSMUSG00000057037 ENSMUST00000161224 Cfhr1 protein_coding Interval_24175 chr11 30921098 30921770 + 0 NA intron (ENSMUSG00000020305.13, intron 1 of 9) protein_coding-intron (ENSMUSG00000020305.13, intron 1 of 9) -13514 ENSMUSG00000084146.1 ENSMUSG00000084146 ENSMUST00000120359 Gm12104 processed_pseudogene Interval_118090 chr4 128908672 128909510 + 0 NA exon (ENSMUSG00000041000.8, exon 5 of 5) protein_coding-exon (ENSMUSG00000041000.8, exon 5 of 5) 25511 ENSMUSG00000041000.8 ENSMUSG00000041000 ENSMUST00000035667 Trim62 protein_coding Interval_103785 chr3 52925133 52925781 + 0 NA intron (ENSMUSG00000104401.1, intron 1 of 4) lincRNA-intron (ENSMUSG00000104401.1, intron 1 of 4) 2209 ENSMUSG00000104401.1 ENSMUSG00000104401 ENSMUST00000194274 Gm20750 lincRNA Interval_32487 chr11 107857044 107857992 + 0 NA Intergenic Intergenic 5773 ENSMUSG00000098991.1 ENSMUSG00000098991 ENSMUST00000184579 Gm27595 rRNA Interval_152110 chr7 129447280 129447512 + 0 NA Intergenic Intergenic -44306 ENSMUSG00000108713.1 ENSMUSG00000108713 ENSMUST00000206093 Gm33027 lincRNA Interval_113972 chr4 62167729 62167967 + 0 NA Intergenic Intergenic -16985 ENSMUSG00000066153.2 ENSMUSG00000066153 ENSMUST00000077719 Mup21 protein_coding Interval_5921 chr1 93235313 93236830 + 0 NA exon (ENSMUSG00000047793.13, exon 1 of 31) protein_coding-exon (ENSMUSG00000047793.13, exon 1 of 31) 220 ENSMUSG00000047793.13 ENSMUSG00000047793 ENSMUST00000165883 Sned1 protein_coding Interval_101710 chr3 9067189 9067729 + 0 NA intron (ENSMUSG00000103116.1, intron 2 of 2) lincRNA-intron (ENSMUSG00000103116.1, intron 2 of 2) -5308 ENSMUSG00000103011.1 ENSMUSG00000103011 ENSMUST00000193160 Gm8860 processed_pseudogene Interval_73262 chr17 35847774 35848600 + 0 NA promoter-TSS (ENSMUSG00000061607.15) protein_coding-promoter-TSS (ENSMUSG00000061607.15) -314 ENSMUSG00000061607.15 ENSMUSG00000061607 ENSMUST00000225192 Mdc1 protein_coding Interval_14018 chr10 25575998 25576286 + 0 NA intron (ENSMUSG00000101537.1, intron 3 of 3) antisense-intron (ENSMUSG00000101537.1, intron 3 of 3) 39756 ENSMUSG00000101537.1 ENSMUSG00000101537 ENSMUST00000191547 Gm29571 antisense Interval_123367 chr5 31870791 31871102 + 0 NA TTS (ENSMUSG00000088514.1) misc_RNA-TTS (ENSMUSG00000088514.1) 900 ENSMUSG00000088514.1 ENSMUSG00000088514 ENSMUST00000157889 Gm24436 misc_RNA Interval_116070 chr4 107386922 107387666 + 0 NA TTS (ENSMUSG00000028614.14) protein_coding-TTS (ENSMUSG00000028614.14) 6209 ENSMUSG00000028614.14 ENSMUSG00000028614 ENSMUST00000132950 Ndc1 protein_coding Interval_165906 chr9 54552152 54552929 + 0 NA intron (ENSMUSG00000037493.6, intron 2 of 5) protein_coding-intron (ENSMUSG00000037493.6, intron 2 of 5) 7678 ENSMUSG00000037493.6 ENSMUSG00000037493 ENSMUST00000041901 Cib2 protein_coding Interval_23294 chr11 21222094 21222390 + 0 NA Intergenic Intergenic -5413 ENSMUSG00000082898.1 ENSMUSG00000082898 ENSMUST00000121606 Gm12041 processed_pseudogene Interval_138707 chr6 91311377 91313222 + 0 NA Intergenic Intergenic 52798 ENSMUSG00000030093.7 ENSMUSG00000030093 ENSMUST00000132936 Wnt7a protein_coding Interval_60156 chr15 66669659 66669851 + 0 NA promoter-TSS (ENSMUSG00000053469.14) protein_coding-promoter-TSS (ENSMUSG00000053469.14) 38867 ENSMUSG00000072501.5 ENSMUSG00000072501 ENSMUST00000231177 Phf20l1 protein_coding Interval_131368 chr5 136755276 136755962 + 0 NA promoter-TSS (ENSMUSG00000004415.15) protein_coding-promoter-TSS (ENSMUSG00000004415.15) 57840 ENSMUSG00000005474.9 ENSMUSG00000005474 ENSMUST00000197849 Myl10 protein_coding Interval_172085 chrX 7070836 7072398 + 0 NA intron (ENSMUSG00000050089.13, intron 2 of 5) protein_coding-intron (ENSMUSG00000050089.13, intron 2 of 5) 3404 ENSMUSG00000050089.13 ENSMUSG00000050089 ENSMUST00000115751 Akap4 protein_coding Interval_74191 chr17 47009696 47011199 + 0 NA promoter-TSS (ENSMUSG00000023977.15) protein_coding-promoter-TSS (ENSMUSG00000023977.15) 6508 ENSMUSG00000091775.2 ENSMUSG00000091775 ENSMUST00000165525 Gm16494 processed_pseudogene Interval_126539 chr5 89981037 89981848 + 0 NA Intergenic Intergenic -98108 ENSMUSG00000043635.12 ENSMUSG00000043635 ENSMUST00000196507 Adamts3 protein_coding Interval_75406 chr17 66394589 66396201 + 0 NA intron (ENSMUSG00000052105.17, intron 3 of 15) protein_coding-intron (ENSMUSG00000052105.17, intron 3 of 13) 18589 ENSMUSG00000093686.1 ENSMUSG00000093686 ENSMUST00000177415 Gm4705 processed_pseudogene Interval_41994 chr13 6100999 6101239 + 0 NA Intergenic Intergenic -27337 ENSMUSG00000113483.1 ENSMUSG00000113483 ENSMUST00000221918 Gm47548 lincRNA Interval_4999 chr1 84055380 84055556 + 0 NA intron (ENSMUSG00000045658.16, intron 2 of 2) protein_coding-intron (ENSMUSG00000045658.16, intron 2 of 2) 79042 ENSMUSG00000102750.1 ENSMUSG00000102750 ENSMUST00000193393 Gm37058 TEC Interval_59545 chr15 55183330 55183849 + 0 NA intron (ENSMUSG00000022419.16, intron 4 of 4) protein_coding-intron (ENSMUSG00000022419.16, intron 4 of 8) 50136 ENSMUSG00000022419.16 ENSMUSG00000022419 ENSMUST00000226687 Deptor protein_coding Interval_31309 chr11 99580767 99581276 + 0 NA promoter-TSS (ENSMUSG00000047253.4) protein_coding-promoter-TSS (ENSMUSG00000047253.4) -5 ENSMUSG00000047253.4 ENSMUSG00000047253 ENSMUST00000054532 Krtap1-5 protein_coding Interval_102323 chr3 21917278 21917568 + 0 NA Intergenic Intergenic 81045 ENSMUSG00000106321.1 ENSMUSG00000106321 ENSMUST00000196313 Gm43674 lincRNA Interval_8720 chr1 149931259 149932034 + 0 NA TTS (ENSMUSG00000056220.14) protein_coding-TTS (ENSMUSG00000056220.14) 29612 ENSMUSG00000056220.14 ENSMUSG00000056220 ENSMUST00000134676 Pla2g4a protein_coding Interval_115431 chr4 98882706 98883593 + 0 NA Intergenic Intergenic 27535 ENSMUSG00000084188.1 ENSMUSG00000084188 ENSMUST00000117920 Gm12851 processed_pseudogene Interval_131614 chr5 138819367 138821468 + 0 NA intron (ENSMUSG00000094504.3, intron 1 of 2) protein_coding-intron (ENSMUSG00000094504.3, intron 1 of 2) 337 ENSMUSG00000094504.3 ENSMUSG00000094504 ENSMUST00000179205 Gm5294 protein_coding Interval_96931 chr2 129631789 129633650 + 0 NA TTS (ENSMUSG00000037902.18) protein_coding-TTS (ENSMUSG00000037902.18) 39880 ENSMUSG00000037902.18 ENSMUSG00000037902 ENSMUST00000162764 Sirpa protein_coding Interval_103654 chr3 51421826 51422055 + 0 NA intron (ENSMUSG00000063273.11, intron 1 of 4) protein_coding-intron (ENSMUSG00000063273.11, intron 1 of 19) -1673 ENSMUSG00000103191.1 ENSMUSG00000103191 ENSMUST00000191756 Gm37646 TEC Interval_109072 chr3 135574162 135574515 + 0 NA Intergenic Intergenic 11147 ENSMUSG00000028164.15 ENSMUSG00000028164 ENSMUST00000153412 Manba protein_coding Interval_60749 chr15 76511304 76512416 + 0 NA promoter-TSS (ENSMUSG00000022555.12) protein_coding-promoter-TSS (ENSMUSG00000022555.12) -186 ENSMUSG00000022555.12 ENSMUSG00000022555 ENSMUST00000229569 Dgat1 protein_coding Interval_5091 chr1 84879608 84880586 + 0 NA intron (ENSMUSG00000073633.9, intron 1 of 3) protein_coding-intron (ENSMUSG00000073633.9, intron 1 of 3) 10946 ENSMUSG00000073633.9 ENSMUSG00000073633 ENSMUST00000151737 Fbxo36 protein_coding Interval_93788 chr2 76885698 76885943 + 0 NA intron (ENSMUSG00000051747.15, intron 8 of 50) protein_coding-intron (ENSMUSG00000051747.15, intron 46 of 190) -49006 ENSMUSG00000051747.15 ENSMUSG00000051747 ENSMUST00000147048 Ttn protein_coding Interval_126074 chr5 77234631 77235375 + 0 NA Intergenic Intergenic 7625 ENSMUSG00000107034.1 ENSMUSG00000107034 ENSMUST00000201959 Gm19060 processed_pseudogene Interval_80978 chr18 52005277 52005695 + 0 NA Intergenic Intergenic -56301 ENSMUSG00000118351.1 ENSMUSG00000118351 ENSMUST00000236725 Gm50447 processed_pseudogene Interval_30732 chr11 96172394 96173506 + 0 NA Intergenic Intergenic -4601 ENSMUSG00000086337.1 ENSMUSG00000086337 ENSMUST00000145517 Gm11535 lincRNA Interval_1080 chr1 15219670 15219887 + 0 NA Intergenic Intergenic 50019 ENSMUSG00000073737.3 ENSMUSG00000073737 ENSMUST00000086739 Gm10566 processed_pseudogene Interval_127770 chr5 107624853 107625229 + 0 NA intron (ENSMUSG00000033773.14, intron 9 of 11) protein_coding-intron (ENSMUSG00000033773.14, intron 9 of 12) 8809 ENSMUSG00000085900.1 ENSMUSG00000085900 ENSMUST00000149156 A930041C12Rik antisense Interval_137328 chr6 71387769 71388114 + 0 NA TTS (ENSMUSG00000002222.14) protein_coding-TTS (ENSMUSG00000002222.14) 11352 ENSMUSG00000002222.14 ENSMUSG00000002222 ENSMUST00000123947 Rmnd5a protein_coding Interval_29024 chr11 79953306 79953965 + 0 NA exon (ENSMUSG00000035575.11, exon 8 of 19) protein_coding-exon (ENSMUSG00000035575.11, exon 8 of 19) 8732 ENSMUSG00000035575.11 ENSMUSG00000035575 ENSMUST00000146127 Utp6 protein_coding Interval_100419 chr2 168919927 168920827 + 0 NA intron (ENSMUSG00000027551.15, intron 5 of 8) protein_coding-intron (ENSMUSG00000027551.15, intron 5 of 8) 34889 ENSMUSG00000027551.15 ENSMUSG00000027551 ENSMUST00000136242 Zfp64 protein_coding Interval_163120 chr9 15414618 15414834 + 0 NA Intergenic Intergenic 9888 ENSMUSG00000111823.1 ENSMUSG00000111823 ENSMUST00000215651 Gm2517 processed_pseudogene Interval_12699 chr10 4371961 4372507 + 0 NA exon (ENSMUSG00000075327.10, exon 1 of 1) protein_coding-exon (ENSMUSG00000075327.10, exon 1 of 1) 1641 ENSMUSG00000075327.10 ENSMUSG00000075327 ENSMUST00000215860 Zbtb2 protein_coding Interval_7337 chr1 129540076 129541065 + 0 NA intron (ENSMUSG00000042581.14, intron 1 of 3) protein_coding-intron (ENSMUSG00000042581.14, intron 2 of 15) -72705 ENSMUSG00000042581.14 ENSMUSG00000042581 ENSMUST00000143130 Thsd7b protein_coding Interval_25878 chr11 52303884 52304076 + 0 NA Intergenic Intergenic 27925 ENSMUSG00000086395.1 ENSMUSG00000086395 ENSMUST00000150973 A630014C17Rik antisense Interval_139533 chr6 100846540 100847312 + 0 NA intron (ENSMUSG00000052144.8, intron 2 of 8) protein_coding-intron (ENSMUSG00000052144.8, intron 2 of 8) -5559 ENSMUSG00000052144.8 ENSMUSG00000052144 ENSMUST00000203067 Ppp4r2 protein_coding Interval_22932 chr11 17549709 17550014 + 0 NA Intergenic Intergenic 1575 ENSMUSG00000087833.1 ENSMUSG00000087833 ENSMUST00000157208 Gm23959 misc_RNA Interval_92216 chr2 56900942 56901108 + 0 NA Intergenic Intergenic 115214 ENSMUSG00000098437.1 ENSMUSG00000098437 ENSMUST00000184814 Mir195b miRNA Interval_146580 chr7 47015538 47016225 + 0 NA Intergenic Intergenic -7646 ENSMUSG00000049516.9 ENSMUSG00000049516 ENSMUST00000208588 Spty2d1 protein_coding Interval_82477 chr18 74331043 74331703 + 0 NA intron (ENSMUSG00000035394.11, intron 8 of 8) protein_coding-intron (ENSMUSG00000035394.11, intron 7 of 7) -17613 ENSMUSG00000035394.11 ENSMUSG00000035394 ENSMUST00000177407 Cfap53 protein_coding Interval_40474 chr12 105075578 105078237 + 0 NA Intergenic Intergenic 44219 ENSMUSG00000021102.4 ENSMUSG00000021102 ENSMUST00000220494 Glrx5 protein_coding Interval_96888 chr2 129234251 129234592 + 0 NA intron (ENSMUSG00000056738.11, intron 4 of 4) lincRNA-intron (ENSMUSG00000056738.11, intron 4 of 4) -7983 ENSMUSG00000087528.1 ENSMUSG00000087528 ENSMUST00000126080 9830144P21Rik processed_transcript Interval_149900 chr7 102441214 102442431 + 0 NA promoter-TSS (ENSMUSG00000030978.10) protein_coding-promoter-TSS (ENSMUSG00000030978.10) -14648 ENSMUSG00000030978.10 ENSMUSG00000030978 ENSMUST00000209630 Rrm1 protein_coding Interval_144859 chr7 28644749 28646187 + 0 NA exon (ENSMUSG00000108865.1, exon 2 of 2) processed_transcript-exon (ENSMUSG00000108865.1, exon 2 of 2) 3081 ENSMUSG00000108865.1 ENSMUSG00000108865 ENSMUST00000209122 Gm44617 processed_transcript Interval_139494 chr6 100538073 100539000 + 0 NA Intergenic Intergenic 11136 ENSMUSG00000101553.1 ENSMUSG00000101553 ENSMUST00000187986 1700049E22Rik lincRNA Interval_39450 chr12 87481498 87482981 + 0 NA exon (ENSMUSG00000112943.1, exon 1 of 1) processed_pseudogene-exon (ENSMUSG00000112943.1, exon 1 of 1) 2131 ENSMUSG00000112943.1 ENSMUSG00000112943 ENSMUST00000222884 Gm18983 processed_pseudogene Interval_58474 chr15 34948639 34948906 + 0 NA intron (ENSMUSG00000022329.15, intron 9 of 10) protein_coding-intron (ENSMUSG00000022329.15, intron 9 of 10) 11465 ENSMUSG00000022329.15 ENSMUSG00000022329 ENSMUST00000138841 Stk3 protein_coding Interval_90407 chr2 30251476 30252712 + 0 NA intron (ENSMUSG00000099041.1, intron 1 of 12) protein_coding-intron (ENSMUSG00000007476.18, intron 2 of 3) 11527 ENSMUSG00000099041.1 ENSMUSG00000099041 ENSMUST00000139454 Gm28035 protein_coding Interval_79313 chr18 30364907 30366389 + 0 NA Intergenic Intergenic 54412 ENSMUSG00000117345.1 ENSMUSG00000117345 ENSMUST00000234753 Gm7926 processed_pseudogene Interval_21069 chr10 125874162 125874439 + 0 NA Intergenic Intergenic -91934 ENSMUSG00000020105.9 ENSMUSG00000020105 ENSMUST00000219974 Lrig3 protein_coding Interval_42905 chr13 21259222 21260423 + 0 NA Intergenic Intergenic 32909 ENSMUSG00000004344.12 ENSMUSG00000004344 ENSMUST00000110491 Gpx5 protein_coding Interval_12506 chr1 194605519 194605809 + 0 NA Intergenic Intergenic -12554 ENSMUSG00000026640.12 ENSMUSG00000026640 ENSMUST00000124785 Plxna2 protein_coding Interval_66245 chr16 32608282 32609638 + 0 NA promoter-TSS (ENSMUSG00000022797.16) protein_coding-promoter-TSS (ENSMUSG00000022797.16) -11429 ENSMUSG00000022797.16 ENSMUSG00000022797 ENSMUST00000128285 Tfrc protein_coding Interval_168120 chr9 77251110 77252374 + 0 NA promoter-TSS (ENSMUSG00000032355.16) protein_coding-promoter-TSS (ENSMUSG00000032355.16) 43497 ENSMUSG00000098668.1 ENSMUSG00000098668 ENSMUST00000184263 Gm27210 processed_pseudogene Interval_113672 chr4 57451707 57452363 + 0 NA intron (ENSMUSG00000090053.9, intron 1 of 6) protein_coding-intron (ENSMUSG00000090053.9, intron 1 of 6) 5514 ENSMUSG00000081615.1 ENSMUSG00000081615 ENSMUST00000121549 Gm12539 processed_pseudogene Interval_95753 chr2 115852278 115853104 + 0 NA Intergenic Intergenic 16176 ENSMUSG00000027210.20 ENSMUSG00000027210 ENSMUST00000138526 Meis2 protein_coding Interval_104365 chr3 64205030 64206543 + 0 NA intron (ENSMUSG00000093416.1, intron 1 of 3) unprocessed_pseudogene-intron (ENSMUSG00000093416.1, intron 1 of 3) 7891 ENSMUSG00000093416.1 ENSMUSG00000093416 ENSMUST00000176980 Gm18294 unprocessed_pseudogene Interval_10993 chr1 177808142 177808411 + 0 NA promoter-TSS (ENSMUSG00000102483.2) protein_coding-promoter-TSS (ENSMUSG00000102483.2) -155 ENSMUSG00000102483.2 ENSMUSG00000102483 ENSMUST00000194528 Catspere1 protein_coding Interval_45930 chr13 59397310 59397813 + 0 NA Intergenic Intergenic 11740 ENSMUSG00000114200.1 ENSMUSG00000114200 ENSMUST00000225350 Gm34721 lincRNA Interval_72436 chr17 29797994 29798810 + 0 NA Intergenic Intergenic 20985 ENSMUSG00000117489.1 ENSMUSG00000117489 ENSMUST00000234919 Gm50016 lincRNA Interval_108644 chr3 129732731 129733463 + 0 NA intron (ENSMUSG00000106120.1, intron 1 of 1) protein_coding-intron (ENSMUSG00000028017.7, intron 5 of 23) 4252 ENSMUSG00000106120.1 ENSMUSG00000106120 ENSMUST00000198992 Gm42697 antisense Interval_148225 chr7 79974268 79976285 + 0 NA Intergenic Intergenic 26089 ENSMUSG00000077059.1 ENSMUSG00000077059 ENSMUST00000103871 Gm24541 miRNA Interval_84048 chr19 6950336 6952601 + 0 NA TTS (ENSMUSG00000024959.14) protein_coding-TTS (ENSMUSG00000024959.14) 6245 ENSMUSG00000024960.9 ENSMUSG00000024960 ENSMUST00000237446 Plcb3 protein_coding Interval_83608 chr18 90544404 90544627 + 0 NA Intergenic Intergenic 13579 ENSMUSG00000117747.1 ENSMUSG00000117747 ENSMUST00000236589 Gm50438 transcribed_processed_pseudogene Interval_137739 chr6 81957231 81957603 + 0 NA TTS (ENSMUSG00000030045.10) protein_coding-TTS (ENSMUSG00000030045.10) 8224 ENSMUSG00000030045.10 ENSMUSG00000030045 ENSMUST00000148025 Mrpl19 protein_coding Interval_18016 chr10 81376658 81377126 + 0 NA intron (ENSMUSG00000020235.16, intron 1 of 1) protein_coding-intron (ENSMUSG00000020235.16, intron 1 of 13) -7351 ENSMUSG00000020235.16 ENSMUSG00000020235 ENSMUST00000127203 Fzr1 protein_coding Interval_18923 chr10 93174688 93175221 + 0 NA intron (ENSMUSG00000020015.10, intron 1 of 6) protein_coding-intron (ENSMUSG00000020015.10, intron 1 of 16) 12169 ENSMUSG00000089214.1 ENSMUSG00000089214 ENSMUST00000158589 Mir1931 miRNA Interval_102917 chr3 32758000 32759577 + 0 NA Intergenic Intergenic -21183 ENSMUSG00000037531.8 ENSMUSG00000037531 ENSMUST00000192021 Mrpl47 protein_coding Interval_32704 chr11 109852546 109852778 + 0 NA Intergenic Intergenic 6784 ENSMUSG00000087393.1 ENSMUSG00000087393 ENSMUST00000143247 1700023C21Rik lincRNA Interval_12890 chr10 7780042 7781589 + 0 NA promoter-TSS (ENSMUSG00000040006.13) protein_coding-promoter-TSS (ENSMUSG00000040006.13) 630 ENSMUSG00000085211.2 ENSMUSG00000085211 ENSMUST00000147230 B430219N15Rik antisense Interval_120704 chr4 150193683 150194210 + 0 NA intron (ENSMUSG00000028972.11, intron 1 of 4) protein_coding-intron (ENSMUSG00000028972.11, intron 4 of 7) 2177 ENSMUSG00000028972.11 ENSMUSG00000028972 ENSMUST00000126449 Car6 protein_coding Interval_70660 chr17 12874940 12875149 + 0 NA promoter-TSS (ENSMUSG00000059408.3) protein_coding-promoter-TSS (ENSMUSG00000059408.3) -990 ENSMUSG00000059408.3 ENSMUSG00000059408 ENSMUST00000075296 Mrgprh protein_coding Interval_22599 chr11 12176697 12177786 + 0 NA Intergenic Intergenic -49243 ENSMUSG00000083527.1 ENSMUSG00000083527 ENSMUST00000121727 Gm12001 processed_pseudogene Interval_6043 chr1 94778827 94779036 + 0 NA Intergenic Intergenic -18152 ENSMUSG00000100518.1 ENSMUSG00000100518 ENSMUST00000185490 4930440C22Rik lincRNA Interval_167122 chr9 65502234 65503683 + 0 NA promoter-TSS (ENSMUSG00000066510.5) protein_coding-promoter-TSS (ENSMUSG00000066510.5) 17235 ENSMUSG00000066510.5 ENSMUSG00000066510 ENSMUST00000217646 Ankdd1a protein_coding Interval_137023 chr6 66516289 66516966 + 0 NA TTS (ENSMUSG00000107775.1) processed_pseudogene-TTS (ENSMUSG00000107775.1) 734 ENSMUSG00000107775.1 ENSMUSG00000107775 ENSMUST00000203630 Gm19764 processed_pseudogene Interval_118758 chr4 133569896 133570447 + 0 NA Intergenic Intergenic -9533 ENSMUSG00000028850.2 ENSMUSG00000028850 ENSMUST00000154648 Gpatch3 protein_coding Interval_11906 chr1 186959294 186959663 + 0 NA Intergenic Intergenic -1030 ENSMUSG00000097935.1 ENSMUSG00000097935 ENSMUST00000180973 Gm3809 processed_pseudogene Interval_8628 chr1 144776799 144777599 + 0 NA Intergenic Intergenic -1764 ENSMUSG00000026357.3 ENSMUSG00000026357 ENSMUST00000027603 Rgs18 protein_coding Interval_150114 chr7 106796498 106796722 + 0 NA Intergenic Intergenic -3412 ENSMUSG00000096714.2 ENSMUSG00000096714 ENSMUST00000065024 Olfr699 protein_coding Interval_130149 chr5 124540326 124541465 + 0 NA promoter-TSS (ENSMUSG00000029390.13) protein_coding-promoter-TSS (ENSMUSG00000029390.13) -60 ENSMUSG00000029390.13 ENSMUSG00000029390 ENSMUST00000135464 Tmed2 protein_coding Interval_163236 chr9 18961979 18962360 + 0 NA Intergenic Intergenic 8737 ENSMUSG00000066912.3 ENSMUSG00000066912 ENSMUST00000086493 Olfr833-ps1 unprocessed_pseudogene Interval_6625 chr1 118382668 118383588 + 0 NA Intergenic Intergenic 25816 ENSMUSG00000099936.1 ENSMUSG00000099936 ENSMUST00000190194 Gm28867 lincRNA Interval_84858 chr19 17657714 17658068 + 0 NA intron (ENSMUSG00000024713.16, intron 7 of 18) protein_coding-intron (ENSMUSG00000024713.16, intron 7 of 37) -34872 ENSMUSG00000118270.1 ENSMUSG00000118270 ENSMUST00000237894 Gm17819 processed_pseudogene Interval_50753 chr14 19138239 19138657 + 0 NA Intergenic Intergenic 10648 ENSMUSG00000091929.2 ENSMUSG00000091929 ENSMUST00000164061 Gm8582 unprocessed_pseudogene Interval_89119 chr2 16811333 16812420 + 0 NA Intergenic Intergenic 148142 ENSMUSG00000076950.1 ENSMUSG00000076950 ENSMUST00000103762 Gm24933 miRNA Interval_149036 chr7 92560897 92562009 + 0 NA exon (ENSMUSG00000030613.13, exon 1 of 9) protein_coding-exon (ENSMUSG00000030613.13, exon 1 of 9) 304 ENSMUSG00000030613.13 ENSMUSG00000030613 ENSMUST00000085017 Ccdc90b protein_coding Interval_35892 chr12 31654312 31655876 + 0 NA promoter-TSS (ENSMUSG00000020648.3) protein_coding-promoter-TSS (ENSMUSG00000020648.3) -318 ENSMUSG00000020648.3 ENSMUSG00000020648 ENSMUST00000219855 Dus4l protein_coding Interval_30313 chr11 93502976 93503924 + 0 NA intron (ENSMUSG00000056158.14, intron 4 of 8) protein_coding-intron (ENSMUSG00000056158.14, intron 5 of 9) -90126 ENSMUSG00000064743.1 ENSMUSG00000064743 ENSMUST00000082809 Gm24856 snRNA Interval_292 KZ289089.1 180067 180863 + 0 NA NA NA NA NA Interval_129318 chr5 119037527 119037892 + 0 NA Intergenic Intergenic -40713 ENSMUSG00000107371.1 ENSMUSG00000107371 ENSMUST00000202922 Gm43784 TEC Interval_74762 chr17 56371991 56372548 + 0 NA promoter-TSS (ENSMUSG00000024201.12) protein_coding-promoter-TSS (ENSMUSG00000024201.12) -21248 ENSMUSG00000024201.12 ENSMUSG00000024201 ENSMUST00000141507 Kdm4b protein_coding Interval_117787 chr4 126226748 126227729 + 0 NA Intergenic Intergenic 6310 ENSMUSG00000028849.17 ENSMUSG00000028849 ENSMUST00000131579 Map7d1 protein_coding Interval_65370 chr16 21955663 21956756 + 0 NA intron (ENSMUSG00000044626.13, intron 9 of 9) protein_coding-intron (ENSMUSG00000044626.13, intron 9 of 9) -8678 ENSMUSG00000022856.9 ENSMUSG00000022856 ENSMUST00000232635 Tmem41a protein_coding Interval_137266 chr6 70905875 70906144 + 0 NA TTS (ENSMUSG00000031668.14) protein_coding-TTS (ENSMUSG00000031668.14) 12918 ENSMUSG00000051896.4 ENSMUSG00000051896 ENSMUST00000063456 Tex37 protein_coding Interval_91232 chr2 36198271 36199133 + 0 NA Intergenic Intergenic -4120 ENSMUSG00000085141.1 ENSMUSG00000085141 ENSMUST00000128242 Gm13429 processed_transcript Interval_150005 chr7 104544897 104545745 + 0 NA Intergenic Intergenic -4812 ENSMUSG00000073928.5 ENSMUSG00000073928 ENSMUST00000098176 Olfr651 protein_coding Interval_30821 chr11 96696389 96697801 + 0 NA intron (ENSMUSG00000057058.16, intron 4 of 7) protein_coding-intron (ENSMUSG00000057058.16, intron 4 of 11) -69707 ENSMUSG00000085242.1 ENSMUSG00000085242 ENSMUST00000124865 Gm11537 antisense Interval_145792 chr7 38339398 38339684 + 0 NA Intergenic Intergenic -24682 ENSMUSG00000101548.1 ENSMUSG00000101548 ENSMUST00000190721 Gm9220 unprocessed_pseudogene Interval_71979 chr17 27407383 27407579 + 0 NA Intergenic Intergenic 9334 ENSMUSG00000116970.1 ENSMUSG00000116970 ENSMUST00000232032 Gm49796 lincRNA Interval_94502 chr2 91710075 91711472 + 0 NA promoter-TSS (ENSMUSG00000027244.14) protein_coding-promoter-TSS (ENSMUSG00000027244.14) -144 ENSMUSG00000027243.8 ENSMUSG00000027243 ENSMUST00000111322 Harbi1 protein_coding Interval_100912 chr2 173304914 173305622 + 0 NA Intergenic Intergenic 28570 ENSMUSG00000087600.1 ENSMUSG00000087600 ENSMUST00000150185 Pmepa1os antisense Interval_38564 chr12 80157552 80157919 + 0 NA Intergenic Intergenic -25139 ENSMUSG00000097729.2 ENSMUSG00000097729 ENSMUST00000180643 2310015A10Rik processed_transcript Interval_64200 chr16 9083427 9084784 + 0 NA intron (ENSMUSG00000116469.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000116469.1, intron 1 of 2) 3960 ENSMUSG00000116469.1 ENSMUSG00000116469 ENSMUST00000229166 Gm49448 lincRNA Interval_151054 chr7 118212510 118213390 + 0 NA promoter-TSS (ENSMUSG00000030655.15) protein_coding-promoter-TSS (ENSMUSG00000030655.15) 18407 ENSMUSG00000109045.1 ENSMUSG00000109045 ENSMUST00000207096 Gm45084 TEC Interval_158166 chr8 79398081 79399951 + 0 NA intron (ENSMUSG00000031681.16, intron 1 of 5) protein_coding-intron (ENSMUSG00000031681.16, intron 1 of 3) -5132 ENSMUSG00000109945.1 ENSMUSG00000109945 ENSMUST00000211483 Gm45601 lincRNA Interval_16674 chr10 66968015 66970726 + 0 NA Intergenic Intergenic -35705 ENSMUSG00000112925.1 ENSMUSG00000112925 ENSMUST00000218205 Gm31763 antisense Interval_144643 chr7 27306003 27306603 + 0 NA TTS (ENSMUSG00000040488.18) protein_coding-TTS (ENSMUSG00000040488.18) 27345 ENSMUSG00000040488.18 ENSMUSG00000040488 ENSMUST00000206413 Ltbp4 protein_coding Interval_70520 chr17 11486499 11486688 + 0 NA intron (ENSMUSG00000023826.16, intron 5 of 10) protein_coding-intron (ENSMUSG00000023826.16, intron 5 of 6) 59205 ENSMUSG00000099618.1 ENSMUSG00000099618 ENSMUST00000185957 Gm28118 processed_pseudogene Interval_24752 chr11 36678965 36679337 + 0 NA intron (ENSMUSG00000049336.16, intron 2 of 28) protein_coding-intron (ENSMUSG00000049336.16, intron 2 of 28) -43731 ENSMUSG00000065173.1 ENSMUSG00000065173 ENSMUST00000083239 Gm22127 snRNA Interval_122634 chr5 24364646 24364933 + 0 NA promoter-TSS (ENSMUSG00000028978.12) protein_coding-promoter-TSS (ENSMUSG00000028978.12) -21 ENSMUSG00000028978.12 ENSMUSG00000028978 ENSMUST00000030834 Nos3 protein_coding Interval_34845 chr12 12622894 12623715 + 0 NA Intergenic Intergenic 46613 ENSMUSG00000118614.1 ENSMUSG00000118614 ENSMUST00000239228 AC107703.1 lincRNA Interval_140979 chr6 123710442 123710629 + 0 NA intron (ENSMUSG00000091620.3, intron 3 of 6) protein_coding-intron (ENSMUSG00000091620.3, intron 2 of 5) 7865 ENSMUSG00000091620.3 ENSMUSG00000091620 ENSMUST00000233395 Vmn2r23 protein_coding Interval_75914 chr17 73008846 73009593 + 0 NA Intergenic Intergenic 19859 ENSMUSG00000117096.1 ENSMUSG00000117096 ENSMUST00000233236 Gm30420 lincRNA Interval_89872 chr2 26132314 26133809 + 0 NA Intergenic Intergenic -5485 ENSMUSG00000087595.1 ENSMUSG00000087595 ENSMUST00000155199 1810012K08Rik lincRNA Interval_62691 chr15 96297134 96298239 + 0 NA intron (ENSMUSG00000033237.19, intron 3 of 4) protein_coding-intron (ENSMUSG00000033237.19, intron 3 of 20) -13191 ENSMUSG00000097536.2 ENSMUSG00000097536 ENSMUST00000185067 2610037D02Rik lincRNA Interval_2726 chr1 43933442 43934571 + 0 NA promoter-TSS (ENSMUSG00000041763.14) protein_coding-promoter-TSS (ENSMUSG00000041763.14) -8 ENSMUSG00000041763.14 ENSMUSG00000041763 ENSMUST00000187115 Tpp2 protein_coding Interval_159644 chr8 95979066 95979381 + 0 NA Intergenic Intergenic 57694 ENSMUSG00000110506.1 ENSMUSG00000110506 ENSMUST00000212919 Gm8637 processed_pseudogene Interval_143248 chr7 4733279 4733563 + 0 NA Intergenic Intergenic -5411 ENSMUSG00000088575.1 ENSMUSG00000088575 ENSMUST00000157950 Gm24537 snRNA Interval_125537 chr5 69464627 69464835 + 0 NA Intergenic Intergenic 3579 ENSMUSG00000043484.3 ENSMUSG00000043484 ENSMUST00000063197 Gm5867 processed_pseudogene Interval_113436 chr4 54981346 54981566 + 0 NA intron (ENSMUSG00000060206.11, intron 1 of 12) protein_coding-intron (ENSMUSG00000060206.11, intron 1 of 12) 36408 ENSMUSG00000060206.11 ENSMUSG00000060206 ENSMUST00000079605 Zfp462 protein_coding Interval_25990 chr11 53358187 53358515 + 0 NA intron (ENSMUSG00000049470.13, intron 1 of 20) protein_coding-intron (ENSMUSG00000049470.13, intron 1 of 20) -12674 ENSMUSG00000082263.1 ENSMUSG00000082263 ENSMUST00000122382 Gm11188 processed_pseudogene Interval_111998 chr4 33117627 33119354 + 0 NA Intergenic Intergenic -14031 ENSMUSG00000028280.9 ENSMUSG00000028280 ENSMUST00000029947 Gabrr1 protein_coding Interval_99265 chr2 158546510 158547379 + 0 NA intron (ENSMUSG00000074625.10, intron 12 of 14) protein_coding-intron (ENSMUSG00000074625.10, intron 12 of 14) 34148 ENSMUSG00000074625.10 ENSMUSG00000074625 ENSMUST00000135838 Arhgap40 protein_coding Interval_118335 chr4 130337901 130338095 + 0 NA intron (ENSMUSG00000028772.19, intron 2 of 5) protein_coding-intron (ENSMUSG00000028772.19, intron 1 of 2) 21918 ENSMUSG00000028772.19 ENSMUSG00000028772 ENSMUST00000167964 Zcchc17 protein_coding Interval_171604 chr9 119480809 119481014 + 0 NA Intergenic Intergenic 35935 ENSMUSG00000042787.15 ENSMUSG00000042787 ENSMUST00000214462 Exog protein_coding Interval_15764 chr10 56338993 56339959 + 0 NA Intergenic Intergenic 15598 ENSMUSG00000071303.4 ENSMUSG00000071303 ENSMUST00000172445 Rps8-ps1 processed_pseudogene Interval_138601 chr6 90308912 90310088 + 0 NA exon (ENSMUSG00000056643.5, exon 3 of 3) protein_coding-exon (ENSMUSG00000056643.5, exon 3 of 3) 7384 ENSMUSG00000049694.13 ENSMUSG00000049694 ENSMUST00000167550 BC048671 protein_coding Interval_172611 chrX 38400534 38400723 + 0 NA TTS (ENSMUSG00000016534.15) protein_coding-TTS (ENSMUSG00000016534.15) 3693 ENSMUSG00000081473.3 ENSMUSG00000081473 ENSMUST00000119359 Gm4853 processed_pseudogene Interval_136623 chr6 56776640 56776878 + 0 NA TTS (ENSMUSG00000059486.11) protein_coding-TTS (ENSMUSG00000059486.11) 20520 ENSMUSG00000059486.11 ENSMUSG00000059486 ENSMUST00000124994 Kbtbd2 protein_coding Interval_160788 chr8 112272208 112272579 + 0 NA Intergenic Intergenic -35427 ENSMUSG00000110435.1 ENSMUSG00000110435 ENSMUST00000212314 Gm3635 processed_pseudogene Interval_140484 chr6 118690046 118690257 + 0 NA intron (ENSMUSG00000051331.16, intron 11 of 44) protein_coding-intron (ENSMUSG00000051331.16, intron 13 of 46) -70927 ENSMUSG00000100867.1 ENSMUSG00000100867 ENSMUST00000185373 Gm18981 processed_pseudogene Interval_144048 chr7 19190306 19190707 + 0 NA intron (ENSMUSG00000040811.15, intron 6 of 16) protein_coding-intron (ENSMUSG00000040811.15, intron 6 of 18) 9041 ENSMUSG00000065543.1 ENSMUSG00000065543 ENSMUST00000083609 Mir330 miRNA Interval_104300 chr3 63074090 63074487 + 0 NA Intergenic Intergenic -77929 ENSMUSG00000089175.1 ENSMUSG00000089175 ENSMUST00000158550 Gm22433 scaRNA Interval_20715 chr10 120460912 120462865 + 0 NA intron (ENSMUSG00000056758.14, intron 3 of 5) protein_coding-intron (ENSMUSG00000056758.14, intron 3 of 4) -13778 ENSMUSG00000076448.1 ENSMUSG00000076448 ENSMUST00000103249 Mir763 miRNA Interval_83549 chr18 89180526 89180788 + 0 NA intron (ENSMUSG00000034028.16, intron 1 of 1) protein_coding-intron (ENSMUSG00000034028.16, intron 1 of 7) -16825 ENSMUSG00000034028.16 ENSMUSG00000034028 ENSMUST00000236835 Cd226 protein_coding Interval_137635 chr6 76978087 76978796 + 0 NA intron (ENSMUSG00000063063.12, intron 4 of 7) protein_coding-intron (ENSMUSG00000063063.12, intron 11 of 17) 165502 ENSMUSG00000063063.12 ENSMUSG00000063063 ENSMUST00000160252 Ctnna2 protein_coding Interval_74632 chr17 53987906 53988156 + 0 NA intron (ENSMUSG00000023943.7, intron 1 of 7) protein_coding-intron (ENSMUSG00000023943.7, intron 1 of 7) 2643 ENSMUSG00000023943.7 ENSMUSG00000023943 ENSMUST00000024738 Sult1c1 protein_coding Interval_14772 chr10 39726099 39726331 + 0 NA intron (ENSMUSG00000087177.7, intron 1 of 1) antisense-intron (ENSMUSG00000087177.7, intron 1 of 3) 5791 ENSMUSG00000087177.7 ENSMUSG00000087177 ENSMUST00000153113 E130307A14Rik antisense Interval_88019 chr19 57954110 57954467 + 0 NA intron (ENSMUSG00000054843.9, intron 27 of 28) protein_coding-intron (ENSMUSG00000054843.9, intron 27 of 28) -96879 ENSMUSG00000093757.1 ENSMUSG00000093757 ENSMUST00000176631 Mir5623 miRNA Interval_84699 chr19 15495188 15496248 + 0 NA Intergenic Intergenic -184286 ENSMUSG00000094850.1 ENSMUSG00000094850 ENSMUST00000083389 Gm24319 snRNA Interval_170867 chr9 111355161 111355734 + 0 NA intron (ENSMUSG00000062296.8, intron 8 of 21) protein_coding-intron (ENSMUSG00000062296.8, intron 8 of 21) -19441 ENSMUSG00000062296.8 ENSMUSG00000062296 ENSMUST00000197650 Trank1 protein_coding Interval_97331 chr2 134539185 134539368 + 0 NA intron (ENSMUSG00000027261.2, intron 3 of 3) protein_coding-intron (ENSMUSG00000027261.2, intron 2 of 7) 15031 ENSMUSG00000027261.2 ENSMUSG00000027261 ENSMUST00000140794 Hao1 protein_coding Interval_64253 chr16 9844958 9845169 + 0 NA intron (ENSMUSG00000059003.12, intron 3 of 13) protein_coding-intron (ENSMUSG00000059003.12, intron 1 of 11) 149860 ENSMUSG00000059003.12 ENSMUSG00000059003 ENSMUST00000197242 Grin2a protein_coding Interval_68788 chr16 86481266 86481434 + 0 NA Intergenic Intergenic 245179 ENSMUSG00000116799.1 ENSMUSG00000116799 ENSMUST00000231827 Gm32357 lincRNA Interval_16889 chr10 69527762 69527977 + 0 NA intron (ENSMUSG00000069601.14, intron 2 of 42) protein_coding-intron (ENSMUSG00000069601.14, intron 2 of 2) 38492 ENSMUSG00000112729.1 ENSMUSG00000112729 ENSMUST00000220152 Gm46231 processed_pseudogene Interval_88106 chr19 59171626 59172322 + 0 NA Intergenic Intergenic -4994 ENSMUSG00000006270.7 ENSMUSG00000006270 ENSMUST00000173710 Vax1 protein_coding Interval_161562 chr8 121228928 121229675 + 0 NA intron (ENSMUSG00000092329.1, intron 1 of 15) protein_coding-intron (ENSMUSG00000092329.1, intron 1 of 15) -25699 ENSMUSG00000097097.2 ENSMUSG00000097097 ENSMUST00000212635 5033426O07Rik lincRNA Interval_105419 chr3 86119186 86120036 + 0 NA intron (ENSMUSG00000028082.14, intron 8 of 12) protein_coding-intron (ENSMUSG00000028082.14, intron 10 of 14) 19077 ENSMUSG00000065847.1 ENSMUSG00000065847 ENSMUST00000083913 Gm25188 snoRNA Interval_60364 chr15 73182423 73185681 + 0 NA intron (ENSMUSG00000036698.11, intron 1 of 18) protein_coding-intron (ENSMUSG00000036698.11, intron 1 of 18) -6205 ENSMUSG00000036698.11 ENSMUSG00000036698 ENSMUST00000230464 Ago2 protein_coding Interval_103582 chr3 50381624 50382100 + 0 NA intron (ENSMUSG00000027737.10, intron 8 of 11) protein_coding-intron (ENSMUSG00000027737.10, intron 8 of 11) 22421 ENSMUSG00000103907.1 ENSMUSG00000103907 ENSMUST00000193524 Gm37498 TEC Interval_61121 chr15 79367871 79369213 + 0 NA TTS (ENSMUSG00000009035.15) protein_coding-TTS (ENSMUSG00000009035.15) 6758 ENSMUSG00000088901.1 ENSMUSG00000088901 ENSMUST00000158276 Mir1943 miRNA Interval_168234 chr9 78095911 78096821 + 0 NA intron (ENSMUSG00000001366.14, intron 5 of 5) protein_coding-intron (ENSMUSG00000001366.14, intron 5 of 12) 12221 ENSMUSG00000001366.14 ENSMUSG00000001366 ENSMUST00000162625 Fbxo9 protein_coding Interval_118722 chr4 133378103 133379002 + 0 NA intron (ENSMUSG00000028854.9, intron 1 of 11) protein_coding-intron (ENSMUSG00000028854.9, intron 1 of 11) 8776 ENSMUSG00000092745.1 ENSMUSG00000092745 ENSMUST00000175004 Mir5122 miRNA Interval_135331 chr6 38369375 38370150 + 0 NA Intergenic Intergenic -3860 ENSMUSG00000106836.1 ENSMUSG00000106836 ENSMUST00000201250 Gm43578 processed_pseudogene Interval_71838 chr17 26438470 26439612 + 0 NA exon (ENSMUSG00000034413.14, exon 3 of 5) protein_coding-exon (ENSMUSG00000034413.14, exon 3 of 5) 24212 ENSMUSG00000034413.14 ENSMUSG00000034413 ENSMUST00000053020 Neurl1b protein_coding Interval_147692 chr7 72088497 72088957 + 0 NA intron (ENSMUSG00000032776.9, intron 21 of 22) protein_coding-intron (ENSMUSG00000032776.9, intron 21 of 22) -22034 ENSMUSG00000108427.1 ENSMUSG00000108427 ENSMUST00000205418 Gm36696 antisense Interval_43770 chr13 36263275 36264612 + 0 NA intron (ENSMUSG00000021420.13, intron 4 of 7) protein_coding-intron (ENSMUSG00000021420.13, intron 4 of 6) 11584 ENSMUSG00000114617.1 ENSMUSG00000114617 ENSMUST00000225563 Gm48766 TEC Interval_128239 chr5 111945831 111946374 + 0 NA Intergenic Intergenic -1867 ENSMUSG00000106060.1 ENSMUSG00000106060 ENSMUST00000197648 Gm42488 lincRNA Interval_16623 chr10 66468355 66469380 + 0 NA Intergenic Intergenic -14686 ENSMUSG00000077439.1 ENSMUSG00000077439 ENSMUST00000104251 Gm22594 snoRNA Interval_93468 chr2 73312044 73313392 + 0 NA promoter-TSS (ENSMUSG00000041777.12) protein_coding-promoter-TSS (ENSMUSG00000041777.12) 59 ENSMUSG00000008226.14 ENSMUSG00000008226 ENSMUST00000123621 Scrn3 protein_coding Interval_43967 chr13 38511875 38513678 + 0 NA intron (ENSMUSG00000038991.17, intron 4 of 9) protein_coding-intron (ENSMUSG00000038991.17, intron 4 of 9) -1320 ENSMUSG00000114399.1 ENSMUSG00000114399 ENSMUST00000225109 Gm47994 processed_pseudogene Interval_96607 chr2 126450143 126450945 + 0 NA intron (ENSMUSG00000060131.11, intron 6 of 18) protein_coding-intron (ENSMUSG00000060131.11, intron 6 of 27) 49445 ENSMUSG00000060131.11 ENSMUSG00000060131 ENSMUST00000129187 Atp8b4 protein_coding Interval_153679 chr8 4511091 4511425 + 0 NA intron (ENSMUSG00000008206.16, intron 2 of 4) protein_coding-intron (ENSMUSG00000008206.16, intron 1 of 10) 10867 ENSMUSG00000102201.1 ENSMUSG00000102201 ENSMUST00000193830 Gm36956 TEC Interval_96919 chr2 129528589 129528831 + 0 NA intron (ENSMUSG00000043727.5, intron 1 of 6) protein_coding-intron (ENSMUSG00000043727.5, intron 1 of 6) 7892 ENSMUSG00000043727.5 ENSMUSG00000043727 ENSMUST00000050309 F830045P16Rik protein_coding Interval_14646 chr10 37626095 37626901 + 0 NA Intergenic Intergenic -173818 ENSMUSG00000111549.1 ENSMUSG00000111549 ENSMUST00000215235 Gm48172 processed_pseudogene Interval_95309 chr2 106113144 106113344 + 0 NA intron (ENSMUSG00000074981.13, intron 8 of 8) transcribed_unitary_pseudogene-intron (ENSMUSG00000074981.13, intron 6 of 35) -72748 ENSMUSG00000100156.1 ENSMUSG00000100156 ENSMUST00000187484 Gm29053 lincRNA Interval_28108 chr11 72882579 72882833 + 0 NA TTS (ENSMUSG00000065298.1) snRNA-TTS (ENSMUSG00000065298.1) 914 ENSMUSG00000065298.1 ENSMUSG00000065298 ENSMUST00000083364 Gm26121 snRNA Interval_20403 chr10 117362732 117363616 + 0 NA promoter-TSS (ENSMUSG00000055531.12) protein_coding-promoter-TSS (ENSMUSG00000055531.12) 13754 ENSMUSG00000055531.12 ENSMUSG00000055531 ENSMUST00000175924 Cpsf6 protein_coding Interval_106977 chr3 102355908 102357153 + 0 NA intron (ENSMUSG00000105891.4, intron 2 of 4) lincRNA-intron (ENSMUSG00000105891.4, intron 2 of 4) -12632 ENSMUSG00000105966.1 ENSMUSG00000105966 ENSMUST00000199507 Gm43242 lincRNA Interval_39140 chr12 85385655 85386299 + 0 NA Intergenic Intergenic -11287 ENSMUSG00000021248.9 ENSMUSG00000021248 ENSMUST00000223375 Tmed10 protein_coding Interval_147038 chr7 59080103 59080720 + 0 NA Intergenic Intergenic -28728 ENSMUSG00000108838.1 ENSMUSG00000108838 ENSMUST00000208567 Gm45189 processed_pseudogene Interval_28028 chr11 72352802 72353020 + 0 NA intron (ENSMUSG00000020799.16, intron 5 of 7) protein_coding-intron (ENSMUSG00000020799.16, intron 5 of 7) 8962 ENSMUSG00000020799.16 ENSMUSG00000020799 ENSMUST00000021155 Tekt1 protein_coding Interval_24151 chr11 30754787 30756223 + 0 NA promoter-TSS (ENSMUSG00000083990.1) processed_pseudogene-promoter-TSS (ENSMUSG00000083990.1) -544 ENSMUSG00000083990.1 ENSMUSG00000083990 ENSMUST00000121590 Gm12101 processed_pseudogene Interval_123386 chr5 32092135 32092502 + 0 NA Intergenic Intergenic 40853 ENSMUSG00000102759.1 ENSMUSG00000102759 ENSMUST00000195772 Gm10463 TEC Interval_126377 chr5 87642453 87642984 + 0 NA Intergenic Intergenic -23490 ENSMUSG00000070702.9 ENSMUSG00000070702 ENSMUST00000197788 Csn1s1 protein_coding Interval_158852 chr8 87235787 87236165 + 0 NA intron (ENSMUSG00000098257.1, intron 2 of 4) lincRNA-intron (ENSMUSG00000098257.1, intron 2 of 4) 32950 ENSMUSG00000098257.1 ENSMUSG00000098257 ENSMUST00000183344 Gm27169 lincRNA Interval_158552 chr8 84424269 84424807 + 0 NA intron (ENSMUSG00000034656.18, intron 3 of 48) protein_coding-intron (ENSMUSG00000034656.18, intron 1 of 46) -43957 ENSMUSG00000064392.1 ENSMUSG00000064392 ENSMUST00000082458 Gm23626 snoRNA Interval_166919 chr9 63936963 63937284 + 0 NA promoter-TSS (ENSMUSG00000111058.1) lincRNA-promoter-TSS (ENSMUSG00000111058.1) -9374 ENSMUSG00000111058.1 ENSMUSG00000111058 ENSMUST00000214827 Gm36033 lincRNA Interval_16656 chr10 66864150 66865536 + 0 NA Intergenic Intergenic 26769 ENSMUSG00000112267.1 ENSMUSG00000112267 ENSMUST00000217953 Gm47903 lincRNA Interval_32993 chr11 113565077 113566080 + 0 NA intron (ENSMUSG00000041654.15, intron 1 of 5) protein_coding-intron (ENSMUSG00000041654.15, intron 1 of 10) 201 ENSMUSG00000041654.15 ENSMUSG00000041654 ENSMUST00000123153 Slc39a11 protein_coding Interval_29990 chr11 88566779 88567469 + 0 NA intron (ENSMUSG00000069769.13, intron 1 of 5) protein_coding-intron (ENSMUSG00000069769.13, intron 6 of 13) 23023 ENSMUSG00000069769.13 ENSMUSG00000069769 ENSMUST00000126293 Msi2 protein_coding Interval_138302 chr6 87042082 87043270 + 0 NA promoter-TSS (ENSMUSG00000029992.14) protein_coding-promoter-TSS (ENSMUSG00000029992.14) -174 ENSMUSG00000029992.14 ENSMUSG00000029992 ENSMUST00000146410 Gfpt1 protein_coding Interval_162652 chr9 7362056 7363025 + 0 NA intron (ENSMUSG00000049723.14, intron 5 of 5) protein_coding-intron (ENSMUSG00000049723.14, intron 5 of 5) 18159 ENSMUSG00000049723.14 ENSMUSG00000049723 ENSMUST00000127722 Mmp12 protein_coding Interval_125715 chr5 73502503 73503849 + 0 NA intron (ENSMUSG00000051674.15, intron 2 of 7) protein_coding-intron (ENSMUSG00000051674.15, intron 1 of 10) 10520 ENSMUSG00000051674.15 ENSMUSG00000051674 ENSMUST00000136268 Dcun1d4 protein_coding Interval_86555 chr19 41676158 41676724 + 0 NA intron (ENSMUSG00000025020.11, intron 3 of 11) protein_coding-intron (ENSMUSG00000025020.11, intron 4 of 36) 67045 ENSMUSG00000025020.11 ENSMUSG00000025020 ENSMUST00000171586 Slit1 protein_coding Interval_102457 chr3 26835933 26836242 + 0 NA intron (ENSMUSG00000039335.11, intron 4 of 9) protein_coding-intron (ENSMUSG00000039335.11, intron 4 of 10) -176677 ENSMUSG00000103712.1 ENSMUSG00000103712 ENSMUST00000194574 Gm37659 processed_pseudogene Interval_143336 chr7 5843177 5843529 + 0 NA Intergenic Intergenic 36340 ENSMUSG00000109012.1 ENSMUSG00000109012 ENSMUST00000207420 Gm44820 processed_pseudogene Interval_148921 chr7 90083945 90085670 + 0 NA Intergenic Intergenic 23161 ENSMUSG00000062235.6 ENSMUSG00000062235 ENSMUST00000058881 Gm5341 processed_pseudogene Interval_104239 chr3 61501076 61501354 + 0 NA Intergenic Intergenic -38354 ENSMUSG00000098208.1 ENSMUSG00000098208 ENSMUST00000182720 Gm8349 processed_pseudogene Interval_127894 chr5 108671277 108671709 + 0 NA TTS (ENSMUSG00000046959.16) protein_coding-TTS (ENSMUSG00000046959.16) 2034 ENSMUSG00000033540.18 ENSMUSG00000033540 ENSMUST00000133482 Idua protein_coding Interval_60465 chr15 73998443 73999044 + 0 NA intron (ENSMUSG00000116256.1, intron 2 of 4) lincRNA-intron (ENSMUSG00000116256.1, intron 2 of 4) 2170 ENSMUSG00000116256.1 ENSMUSG00000116256 ENSMUST00000230277 Gm32405 lincRNA Interval_61645 chr15 83121720 83123141 + 0 NA promoter-TSS (ENSMUSG00000018040.9) protein_coding-promoter-TSS (ENSMUSG00000018040.9) -4084 ENSMUSG00000018040.9 ENSMUSG00000018040 ENSMUST00000167483 Rrp7a protein_coding Interval_46870 chr13 72888786 72889001 + 0 NA Intergenic Intergenic -72130 ENSMUSG00000113082.1 ENSMUSG00000113082 ENSMUST00000223149 D730050B12Rik lincRNA Interval_30225 chr11 91132950 91133237 + 0 NA Intergenic Intergenic -271745 ENSMUSG00000083764.1 ENSMUSG00000083764 ENSMUST00000118450 Gm11516 processed_pseudogene Interval_76881 chr17 84709666 84709854 + 0 NA intron (ENSMUSG00000024120.12, intron 34 of 37) protein_coding-intron (ENSMUSG00000024120.12, intron 34 of 37) 21424 ENSMUSG00000024120.12 ENSMUSG00000024120 ENSMUST00000159222 Lrpprc protein_coding Interval_2413 chr1 39111910 39112160 + 0 NA Intergenic Intergenic -28697 ENSMUSG00000103182.1 ENSMUSG00000103182 ENSMUST00000195455 Gm37091 TEC Interval_103751 chr3 52338694 52339416 + 0 NA intron (ENSMUSG00000044167.6, intron 1 of 2) protein_coding-intron (ENSMUSG00000044167.6, intron 1 of 2) 56814 ENSMUSG00000102844.1 ENSMUSG00000102844 ENSMUST00000193915 Gm38034 TEC Interval_31326 chr11 99980444 99980684 + 0 NA Intergenic Intergenic -1511 ENSMUSG00000078254.1 ENSMUSG00000078254 ENSMUST00000105051 Krtap29-1 protein_coding Interval_98217 chr2 150002006 150002401 + 0 NA intron (ENSMUSG00000074736.10, intron 3 of 3) protein_coding-intron (ENSMUSG00000074736.10, intron 4 of 4) 109373 ENSMUSG00000083055.1 ENSMUSG00000083055 ENSMUST00000119999 Gm14140 processed_pseudogene Interval_38905 chr12 83713590 83714296 + 0 NA intron (ENSMUSG00000019969.14, intron 3 of 3) protein_coding-intron (ENSMUSG00000019969.14, intron 4 of 11) 17514 ENSMUSG00000114050.1 ENSMUSG00000114050 ENSMUST00000222646 Gm47666 antisense Interval_139230 chr6 97352681 97353313 + 0 NA exon (ENSMUSG00000030064.16, exon 8 of 8) protein_coding-exon (ENSMUSG00000030064.16, exon 8 of 8) -61736 ENSMUSG00000030064.16 ENSMUSG00000030064 ENSMUST00000124050 Frmd4b protein_coding Interval_124024 chr5 37338008 37338986 + 0 NA promoter-TSS (ENSMUSG00000050248.11) protein_coding-promoter-TSS (ENSMUSG00000050248.11) -20125 ENSMUSG00000029122.11 ENSMUSG00000029122 ENSMUST00000133376 Evc protein_coding Interval_88011 chr19 57869000 57869317 + 0 NA intron (ENSMUSG00000054843.9, intron 26 of 28) protein_coding-intron (ENSMUSG00000054843.9, intron 26 of 28) -182009 ENSMUSG00000093757.1 ENSMUSG00000093757 ENSMUST00000176631 Mir5623 miRNA Interval_50291 chr14 11682118 11683198 + 0 NA intron (ENSMUSG00000021745.14, intron 1 of 3) protein_coding-intron (ENSMUSG00000021745.14, intron 1 of 29) -85285 ENSMUSG00000114310.1 ENSMUSG00000114310 ENSMUST00000225152 Gm48602 TEC Interval_81036 chr18 53221233 53221730 + 0 NA TTS (ENSMUSG00000034484.8) protein_coding-TTS (ENSMUSG00000034484.8) 405 ENSMUSG00000118240.1 ENSMUSG00000118240 ENSMUST00000235759 Gm1859 processed_pseudogene Interval_113178 chr4 48971592 48972924 + 0 NA promoter-TSS (ENSMUSG00000083869.1) processed_pseudogene-promoter-TSS (ENSMUSG00000083869.1) -720 ENSMUSG00000083869.1 ENSMUSG00000083869 ENSMUST00000118372 Gm12442 processed_pseudogene Interval_132203 chr5 143314489 143315746 + 0 NA promoter-TSS (ENSMUSG00000039244.10) protein_coding-promoter-TSS (ENSMUSG00000039244.10) 223 ENSMUSG00000039244.10 ENSMUSG00000039244 ENSMUST00000162332 E130309D02Rik protein_coding Interval_92223 chr2 57114186 57117743 + 0 NA promoter-TSS (ENSMUSG00000026826.13) protein_coding-promoter-TSS (ENSMUSG00000026826.13) 8039 ENSMUSG00000026826.13 ENSMUSG00000026826 ENSMUST00000128776 Nr4a2 protein_coding Interval_75733 chr17 70921826 70922120 + 0 NA intron (ENSMUSG00000097154.2, intron 1 of 2) lincRNA-intron (ENSMUSG00000097154.2, intron 1 of 2) 4559 ENSMUSG00000117156.1 ENSMUSG00000117156 ENSMUST00000233140 Gm49904 processed_pseudogene Interval_36851 chr12 54675403 54675614 + 0 NA intron (ENSMUSG00000054302.15, intron 4 of 4) protein_coding-intron (ENSMUSG00000054302.15, intron 2 of 2) 4301 ENSMUSG00000113392.1 ENSMUSG00000113392 ENSMUST00000223274 Gm36262 processed_pseudogene Interval_94001 chr2 80609346 80609553 + 0 NA Intergenic Intergenic 6716 ENSMUSG00000083284.1 ENSMUSG00000083284 ENSMUST00000121557 Gm13688 processed_pseudogene Interval_148820 chr7 88556915 88558103 + 0 NA Intergenic Intergenic 15340 ENSMUSG00000098174.1 ENSMUSG00000098174 ENSMUST00000183134 Gm8183 processed_pseudogene Interval_130139 chr5 124482739 124484177 + 0 NA promoter-TSS (ENSMUSG00000029402.8) protein_coding-promoter-TSS (ENSMUSG00000029402.8) 256 ENSMUSG00000029402.8 ENSMUSG00000029402 ENSMUST00000111453 Snrnp35 protein_coding Interval_20039 chr10 112424991 112425983 + 0 NA intron (ENSMUSG00000035681.7, intron 2 of 4) protein_coding-intron (ENSMUSG00000035681.7, intron 2 of 4) -30769 ENSMUSG00000035681.7 ENSMUSG00000035681 ENSMUST00000218827 Kcnc2 protein_coding Interval_120968 chr4 151982971 151983360 + 0 NA exon (ENSMUSG00000039759.10, exon 4 of 4) protein_coding-exon (ENSMUSG00000039759.10, exon 4 of 4) 4181 ENSMUSG00000039768.16 ENSMUSG00000039768 ENSMUST00000124955 Dnajc11 protein_coding Interval_14157 chr10 28164817 28165048 + 0 NA intron (ENSMUSG00000019889.10, intron 1 of 2) protein_coding-intron (ENSMUSG00000019889.10, intron 1 of 31) 49189 ENSMUSG00000076377.1 ENSMUSG00000076377 ENSMUST00000102422 Gm22370 miRNA Interval_95679 chr2 114057241 114058571 + 0 NA intron (ENSMUSG00000092397.7, intron 2 of 2) processed_transcript-intron (ENSMUSG00000092201.7, intron 5 of 7) 2659 ENSMUSG00000092397.7 ENSMUSG00000092397 ENSMUST00000155185 C130080G10Rik antisense Interval_144174 chr7 19800765 19800963 + 0 NA Intergenic Intergenic -8745 ENSMUSG00000087206.1 ENSMUSG00000087206 ENSMUST00000128181 Gm16175 antisense Interval_167557 chr9 70455105 70455293 + 0 NA TTS (ENSMUSG00000032217.13) protein_coding-TTS (ENSMUSG00000032217.13) -1353 ENSMUSG00000032217.13 ENSMUSG00000032217 ENSMUST00000213694 Rnf111 protein_coding Interval_53100 chr14 54443033 54443861 + 0 NA intron (ENSMUSG00000000957.11, intron 9 of 9) protein_coding-intron (ENSMUSG00000000957.11, intron 9 of 9) -2871 ENSMUSG00000115270.1 ENSMUSG00000115270 ENSMUST00000226138 5430430K15Rik TEC Interval_55458 chr14 87502457 87502777 + 0 NA intron (ENSMUSG00000022019.16, intron 10 of 13) protein_coding-intron (ENSMUSG00000022019.16, intron 10 of 13) 9664 ENSMUSG00000115184.1 ENSMUSG00000115184 ENSMUST00000226795 Gm49197 TEC Interval_93603 chr2 74752613 74754323 + 0 NA promoter-TSS (ENSMUSG00000086559.1) lincRNA-promoter-TSS (ENSMUSG00000086559.1) 574 ENSMUSG00000075277.5 ENSMUSG00000075277 ENSMUST00000230540 Haglr bidirectional_promoter_lncRNA Interval_71982 chr17 27421679 27422692 + 0 NA TTS (ENSMUSG00000063239.17) protein_coding-TTS (ENSMUSG00000063239.17) -15344 ENSMUSG00000116682.1 ENSMUSG00000116682 ENSMUST00000231804 Gm49789 TEC Interval_119552 chr4 138339669 138340549 + 0 NA intron (ENSMUSG00000028755.3, intron 1 of 1) protein_coding-intron (ENSMUSG00000028755.3, intron 3 of 3) 3540 ENSMUSG00000028755.3 ENSMUSG00000028755 ENSMUST00000030535 Cda protein_coding Interval_144336 chr7 24546405 24547633 + 0 NA promoter-TSS (ENSMUSG00000011632.7) protein_coding-promoter-TSS (ENSMUSG00000011632.7) -182 ENSMUSG00000051768.9 ENSMUSG00000051768 ENSMUST00000205453 Xrcc1 protein_coding Interval_6266 chr1 104993793 104994695 + 0 NA exon (ENSMUSG00000050840.8, exon 12 of 12) protein_coding-exon (ENSMUSG00000050840.8, exon 12 of 12) -81911 ENSMUSG00000089866.1 ENSMUSG00000089866 ENSMUST00000159213 Gm15699 antisense Interval_29296 chr11 82758842 82759344 + 0 NA intron (ENSMUSG00000020698.11, intron 3 of 13) protein_coding-intron (ENSMUSG00000020698.11, intron 3 of 13) 5228 ENSMUSG00000020698.11 ENSMUSG00000020698 ENSMUST00000100722 Cct6b protein_coding Interval_121158 chr4 153631143 153633933 + 0 NA Intergenic Intergenic -150359 ENSMUSG00000039546.9 ENSMUSG00000039546 ENSMUST00000149177 Ajap1 protein_coding Interval_79721 chr18 34721319 34721691 + 0 NA Intergenic Intergenic -1118 ENSMUSG00000024366.8 ENSMUSG00000024366 ENSMUST00000025224 Gfra3 protein_coding Interval_28818 chr11 78515724 78516134 + 0 NA promoter-TSS (ENSMUSG00000001100.10) protein_coding-promoter-TSS (ENSMUSG00000001100.10) -890 ENSMUSG00000001100.10 ENSMUSG00000001100 ENSMUST00000151499 Poldip2 protein_coding Interval_78563 chr18 14732484 14732969 + 0 NA intron (ENSMUSG00000036743.4, intron 4 of 5) protein_coding-intron (ENSMUSG00000036743.4, intron 4 of 6) 6180 ENSMUSG00000036743.4 ENSMUSG00000036743 ENSMUST00000235037 Psma8 protein_coding Interval_91385 chr2 38429340 38430616 + 0 NA intron (ENSMUSG00000085950.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000085950.1, intron 1 of 1) 5976 ENSMUSG00000085950.1 ENSMUSG00000085950 ENSMUST00000146404 Gm13589 lincRNA Interval_115983 chr4 106799315 106800557 + 0 NA promoter-TSS (ENSMUSG00000034853.16) protein_coding-promoter-TSS (ENSMUSG00000034853.16) -93 ENSMUSG00000034853.16 ENSMUSG00000034853 ENSMUST00000148688 Acot11 protein_coding Interval_17616 chr10 78218665 78218919 + 0 NA intron (ENSMUSG00000000374.8, intron 4 of 4) protein_coding-intron (ENSMUSG00000000374.8, intron 5 of 22) -19693 ENSMUSG00000000374.8 ENSMUSG00000000374 ENSMUST00000217980 Trappc10 protein_coding Interval_172426 chrX 19264045 19264660 + 0 NA Intergenic Intergenic -39089 ENSMUSG00000097497.1 ENSMUSG00000097497 ENSMUST00000180592 Gm26652 lincRNA Interval_170619 chr9 109576047 109576642 + 0 NA Intergenic Intergenic -2120 ENSMUSG00000106495.1 ENSMUSG00000106495 ENSMUST00000198533 Gm42755 TEC Interval_118487 chr4 131981730 131982199 + 0 NA intron (ENSMUSG00000028906.17, intron 8 of 14) protein_coding-intron (ENSMUSG00000028906.17, intron 8 of 20) 10325 ENSMUSG00000098577.1 ENSMUSG00000098577 ENSMUST00000184484 Gm27445 miRNA Interval_143718 chr7 15901128 15901845 + 0 NA promoter-TSS (ENSMUSG00000074365.13) protein_coding-promoter-TSS (ENSMUSG00000074365.13) 4080 ENSMUSG00000074365.13 ENSMUSG00000074365 ENSMUST00000171280 Crxos protein_coding Interval_120996 chr4 152125187 152126660 + 0 NA exon (ENSMUSG00000028943.18, exon 12 of 12) protein_coding-exon (ENSMUSG00000028943.18, exon 12 of 12) 7952 ENSMUSG00000024793.14 ENSMUSG00000024793 ENSMUST00000153619 Tnfrsf25 protein_coding Interval_5886 chr1 92956548 92957367 + 0 NA intron (ENSMUSG00000026271.15, intron 1 of 2) protein_coding-intron (ENSMUSG00000026271.15, intron 1 of 1) 793 ENSMUSG00000026271.15 ENSMUSG00000026271 ENSMUST00000169198 Gpr35 protein_coding Interval_152900 chr7 139584627 139586419 + 0 NA Intergenic Intergenic -2733 ENSMUSG00000041309.17 ENSMUSG00000041309 ENSMUST00000106095 Nkx6-2 protein_coding Interval_87547 chr19 53371587 53373392 + 0 NA promoter-TSS (ENSMUSG00000067085.1) protein_coding-promoter-TSS (ENSMUSG00000067085.1) -723 ENSMUSG00000067085.1 ENSMUSG00000067085 ENSMUST00000086887 Gm10197 protein_coding Interval_93323 chr2 71932895 71933078 + 0 NA Intergenic Intergenic -23067 ENSMUSG00000087345.1 ENSMUSG00000087345 ENSMUST00000133981 Gm13746 lincRNA Interval_89357 chr2 19715586 19716218 + 0 NA Intergenic Intergenic 24614 ENSMUSG00000077342.1 ENSMUSG00000077342 ENSMUST00000104154 Gm24670 snoRNA Interval_158403 chr8 83514365 83515043 + 0 NA Intergenic Intergenic -21076 ENSMUSG00000047286.7 ENSMUSG00000047286 ENSMUST00000058609 Olfr370 protein_coding Interval_40091 chr12 101105043 101106113 + 0 NA promoter-TSS (ENSMUSG00000113817.1) transcribed_unprocessed_pseudogene-promoter-TSS (ENSMUSG00000113817.1) 11533 ENSMUSG00000113817.1 ENSMUSG00000113817 ENSMUST00000223122 Gm21056 transcribed_unprocessed_pseudogene Interval_5588 chr1 90006515 90006784 + 0 NA intron (ENSMUSG00000067081.13, intron 1 of 5) protein_coding-intron (ENSMUSG00000067081.13, intron 1 of 5) -10197 ENSMUSG00000067081.13 ENSMUSG00000067081 ENSMUST00000151330 Asb18 protein_coding Interval_95485 chr2 110037333 110038158 + 0 NA promoter-TSS (ENSMUSG00000027160.16) protein_coding-promoter-TSS (ENSMUSG00000027160.16) -3150 ENSMUSG00000027160.16 ENSMUSG00000027160 ENSMUST00000155110 Ccdc34 protein_coding Interval_131409 chr5 136986529 136988033 + 0 NA promoter-TSS (ENSMUSG00000059518.14) protein_coding-promoter-TSS (ENSMUSG00000059518.14) 740 ENSMUSG00000059518.14 ENSMUSG00000059518 ENSMUST00000137272 Znhit1 protein_coding Interval_91880 chr2 50980336 50980541 + 0 NA Intergenic Intergenic 70754 ENSMUSG00000083270.1 ENSMUSG00000083270 ENSMUST00000119159 Gm13498 processed_pseudogene Interval_59628 chr15 56742181 56743786 + 0 NA intron (ENSMUSG00000086541.8, intron 2 of 2) processed_transcript-intron (ENSMUSG00000086541.8, intron 1 of 2) 40445 ENSMUSG00000115493.1 ENSMUSG00000115493 ENSMUST00000228866 Gm5673 processed_pseudogene Interval_39145 chr12 85429706 85431154 + 0 NA intron (ENSMUSG00000113940.1, intron 2 of 2) lincRNA-intron (ENSMUSG00000113940.1, intron 1 of 1) 5819 ENSMUSG00000113940.1 ENSMUSG00000113940 ENSMUST00000220805 Gm40477 lincRNA Interval_98845 chr2 155512484 155512694 + 0 NA intron (ENSMUSG00000027603.15, intron 3 of 5) protein_coding-intron (ENSMUSG00000027603.15, intron 1 of 14) -5635 ENSMUSG00000027603.15 ENSMUSG00000027603 ENSMUST00000147601 Ggt7 protein_coding Interval_79921 chr18 35937064 35940100 + 0 NA Intergenic Intergenic -14242 ENSMUSG00000080529.1 ENSMUSG00000080529 ENSMUST00000116879 Gm23882 miRNA Interval_65747 chr16 26967607 26968379 + 0 NA exon (ENSMUSG00000068428.7, exon 1 of 5) protein_coding-exon (ENSMUSG00000068428.7, exon 1 of 5) 252 ENSMUSG00000068428.7 ENSMUSG00000068428 ENSMUST00000231299 Gmnc protein_coding Interval_13531 chr10 19196007 19196201 + 0 NA intron (ENSMUSG00000111052.1, intron 3 of 3) lincRNA-intron (ENSMUSG00000111052.1, intron 3 of 3) 28866 ENSMUSG00000111052.1 ENSMUSG00000111052 ENSMUST00000216683 Gm20139 lincRNA Interval_69894 chr16 97976431 97977932 + 0 NA Intergenic Intergenic -14588 ENSMUSG00000046962.16 ENSMUSG00000046962 ENSMUST00000231560 Zbtb21 protein_coding Interval_24516 chr11 33934212 33934675 + 0 NA intron (ENSMUSG00000053519.17, intron 1 of 7) protein_coding-intron (ENSMUSG00000053519.17, intron 1 of 3) -28570 ENSMUSG00000020155.2 ENSMUSG00000020155 ENSMUST00000020362 Kcnmb1 protein_coding Interval_101994 chr3 14618586 14619011 + 0 NA Intergenic Intergenic -7555 ENSMUSG00000078784.8 ENSMUSG00000078784 ENSMUST00000190064 Rbis protein_coding Interval_123172 chr5 30353390 30353756 + 0 NA promoter-TSS (ENSMUSG00000073102.7) protein_coding-promoter-TSS (ENSMUSG00000073102.7) 11793 ENSMUSG00000073102.7 ENSMUSG00000073102 ENSMUST00000198023 Drc1 protein_coding Interval_139207 chr6 97205094 97205942 + 0 NA promoter-TSS (ENSMUSG00000030061.16) protein_coding-promoter-TSS (ENSMUSG00000030061.16) -5171 ENSMUSG00000035199.6 ENSMUSG00000035199 ENSMUST00000044681 Arl6ip5 protein_coding Interval_97728 chr2 143536488 143536719 + 0 NA exon (ENSMUSG00000086171.7, exon 3 of 3) antisense-exon (ENSMUSG00000086171.7, exon 3 of 3) 9374 ENSMUSG00000086171.7 ENSMUSG00000086171 ENSMUST00000156780 Pcsk2os1 antisense Interval_104987 chr3 79531299 79532514 + 0 NA promoter-TSS (ENSMUSG00000061175.12) protein_coding-promoter-TSS (ENSMUSG00000061175.12) -30 ENSMUSG00000061175.12 ENSMUSG00000061175 ENSMUST00000139171 Fnip2 protein_coding Interval_132638 chr5 146895470 146896153 + 0 NA Intergenic Intergenic 50046 ENSMUSG00000029641.8 ENSMUSG00000029641 ENSMUST00000198570 Rasl11a protein_coding Interval_165036 chr9 44071949 44072377 + 0 NA promoter-TSS (ENSMUSG00000032010.15) protein_coding-promoter-TSS (ENSMUSG00000032010.15) -695 ENSMUSG00000111415.1 ENSMUSG00000111415 ENSMUST00000216448 Gm39325 antisense Interval_49698 chr13 114064203 114065600 + 0 NA intron (ENSMUSG00000042348.10, intron 5 of 5) protein_coding-intron (ENSMUSG00000042348.10, intron 4 of 4) 55515 ENSMUSG00000114696.1 ENSMUSG00000114696 ENSMUST00000223997 Gm47479 TEC Interval_45199 chr13 53156429 53156672 + 0 NA intron (ENSMUSG00000021464.14, intron 1 of 8) protein_coding-intron (ENSMUSG00000021464.14, intron 1 of 8) 119108 ENSMUSG00000021464.14 ENSMUSG00000021464 ENSMUST00000149299 Ror2 protein_coding Interval_101278 chr2 180144356 180144879 + 0 NA intron (ENSMUSG00000039050.8, intron 4 of 12) protein_coding-intron (ENSMUSG00000039050.8, intron 4 of 13) 25213 ENSMUSG00000039050.8 ENSMUSG00000039050 ENSMUST00000124225 Osbpl2 protein_coding Interval_82661 chr18 75723988 75724712 + 0 NA Intergenic Intergenic -42793 ENSMUSG00000118164.1 ENSMUSG00000118164 ENSMUST00000237826 Gm20570 processed_pseudogene Interval_78200 chr18 10082547 10082838 + 0 NA intron (ENSMUSG00000024290.9, intron 24 of 32) protein_coding-intron (ENSMUSG00000024290.9, intron 25 of 32) 29686 ENSMUSG00000024290.9 ENSMUSG00000024290 ENSMUST00000235075 Rock1 protein_coding Interval_100940 chr2 173522598 173522904 + 0 NA intron (ENSMUSG00000027518.3, intron 1 of 3) protein_coding-intron (ENSMUSG00000027518.3, intron 1 of 3) 165 ENSMUSG00000027518.3 ENSMUSG00000027518 ENSMUST00000029023 1700021F07Rik protein_coding Interval_47969 chr13 94745063 94745454 + 0 NA Intergenic Intergenic -7012 ENSMUSG00000113006.1 ENSMUSG00000113006 ENSMUST00000221997 Gm48316 processed_pseudogene Interval_25377 chr11 46904013 46904932 + 0 NA intron (ENSMUSG00000020354.15, intron 6 of 6) protein_coding-intron (ENSMUSG00000020354.15, intron 6 of 6) 30059 ENSMUSG00000082818.1 ENSMUSG00000082818 ENSMUST00000122081 Gm12175 processed_pseudogene Interval_45080 chr13 51919027 51921710 + 0 NA Intergenic Intergenic -52846 ENSMUSG00000097495.1 ENSMUSG00000097495 ENSMUST00000181851 Gm26651 lincRNA Interval_60992 chr15 78571879 78572192 + 0 NA intron (ENSMUSG00000033220.7, intron 1 of 3) protein_coding-intron (ENSMUSG00000033220.7, intron 1 of 6) -7063 ENSMUSG00000033220.7 ENSMUSG00000033220 ENSMUST00000229394 Rac2 protein_coding Interval_97403 chr2 135789290 135789617 + 0 NA intron (ENSMUSG00000039943.16, intron 1 of 4) protein_coding-intron (ENSMUSG00000039943.16, intron 1 of 36) 23474 ENSMUSG00000086928.1 ENSMUSG00000086928 ENSMUST00000140949 Gm14210 lincRNA Interval_124126 chr5 38520462 38521884 + 0 NA Intergenic Intergenic 13710 ENSMUSG00000089646.1 ENSMUSG00000089646 ENSMUST00000162135 Gm15796 processed_pseudogene Interval_10860 chr1 176211952 176212251 + 0 NA intron (ENSMUSG00000055214.15, intron 1 of 5) protein_coding-intron (ENSMUSG00000055214.15, intron 1 of 9) 1740 ENSMUSG00000055214.15 ENSMUSG00000055214 ENSMUST00000111166 Pld5 protein_coding Interval_173243 chrX 75118958 75119171 + 0 NA intron (ENSMUSG00000031402.12, intron 1 of 5) protein_coding-intron (ENSMUSG00000031402.12, intron 5 of 11) 11922 ENSMUSG00000031402.12 ENSMUSG00000031402 ENSMUST00000127023 Mpp1 protein_coding Interval_136597 chr6 56441820 56442016 + 0 NA intron (ENSMUSG00000004347.17, intron 4 of 19) protein_coding-intron (ENSMUSG00000004347.17, intron 3 of 18) 141928 ENSMUSG00000096087.1 ENSMUSG00000096087 ENSMUST00000104123 Gm24709 snoRNA Interval_112294 chr4 40160595 40160992 + 0 NA intron (ENSMUSG00000028405.9, intron 1 of 20) protein_coding-intron (ENSMUSG00000028405.9, intron 1 of 20) -2926 ENSMUSG00000028405.9 ENSMUSG00000028405 ENSMUST00000135787 Aco1 protein_coding Interval_112111 chr4 34771141 34772384 + 0 NA intron (ENSMUSG00000028295.14, intron 1 of 2) protein_coding-intron (ENSMUSG00000028295.14, intron 1 of 2) 6593 ENSMUSG00000028295.14 ENSMUSG00000028295 ENSMUST00000131295 Smim8 protein_coding Interval_171082 chr9 114442732 114443032 + 0 NA intron (ENSMUSG00000045594.10, intron 8 of 14) protein_coding-intron (ENSMUSG00000045594.10, intron 9 of 15) 41774 ENSMUSG00000045594.10 ENSMUSG00000045594 ENSMUST00000217583 Glb1 protein_coding Interval_28601 chr11 77070926 77071326 + 0 NA intron (ENSMUSG00000037958.13, intron 2 of 2) protein_coding-intron (ENSMUSG00000037958.13, intron 2 of 6) 7046 ENSMUSG00000065518.2 ENSMUSG00000065518 ENSMUST00000083584 Mir423 miRNA Interval_45654 chr13 56593959 56594161 + 0 NA Intergenic Intergenic -1477 ENSMUSG00000114604.1 ENSMUSG00000114604 ENSMUST00000224345 2010203P06Rik lincRNA Interval_8412 chr1 138979266 138980102 + 0 NA TTS (ENSMUSG00000104900.1) sense_intronic-TTS (ENSMUSG00000104900.1) 2028 ENSMUSG00000104900.1 ENSMUSG00000104900 ENSMUST00000200494 4930596I21Rik sense_intronic Interval_134908 chr6 33454110 33454597 + 0 NA intron (ENSMUSG00000029763.17, intron 9 of 12) protein_coding-intron (ENSMUSG00000029763.17, intron 9 of 17) 21345 ENSMUSG00000107358.1 ENSMUSG00000107358 ENSMUST00000201039 Gm43168 TEC Interval_27171 chr11 63690945 63691339 + 0 NA Intergenic Intergenic -90219 ENSMUSG00000082256.1 ENSMUSG00000082256 ENSMUST00000119770 Gm12287 processed_pseudogene Interval_81391 chr18 60425898 60427154 + 0 NA exon (ENSMUSG00000073554.3, exon 1 of 2) pseudogene-exon (ENSMUSG00000073554.3, exon 1 of 2) 234 ENSMUSG00000073554.3 ENSMUSG00000073554 ENSMUST00000051629 Gm6960 pseudogene Interval_163403 chr9 21274954 21276280 + 0 NA promoter-TSS (ENSMUSG00000035047.9) protein_coding-promoter-TSS (ENSMUSG00000035047.9) 7539 ENSMUSG00000002820.6 ENSMUSG00000002820 ENSMUST00000217591 Atg4d protein_coding Interval_98875 chr2 155716170 155716472 + 0 NA promoter-TSS (ENSMUSG00000038312.10) protein_coding-promoter-TSS (ENSMUSG00000038312.10) -3003 ENSMUSG00000038312.10 ENSMUSG00000038312 ENSMUST00000139868 Edem2 protein_coding Interval_74551 chr17 53279784 53280610 + 0 NA Intergenic Intergenic 24210 ENSMUSG00000117089.1 ENSMUSG00000117089 ENSMUST00000233402 Gm49914 processed_pseudogene Interval_162487 chr9 3174847 3175988 + 0 NA intron (ENSMUSG00000042360.12, intron 4 of 5) processed_transcript-intron (ENSMUSG00000042360.12, intron 4 of 5) -11693 ENSMUSG00000110587.1 ENSMUSG00000110587 ENSMUST00000212122 Gm7344 processed_pseudogene Interval_106493 chr3 96679221 96681146 + 0 NA promoter-TSS (ENSMUSG00000038354.13) protein_coding-promoter-TSS (ENSMUSG00000038354.13) 90 ENSMUSG00000038354.13 ENSMUSG00000038354 ENSMUST00000130429 Ankrd35 protein_coding Interval_50102 chr14 7997290 7997665 + 0 NA Intergenic Intergenic -5442 ENSMUSG00000025277.14 ENSMUSG00000025277 ENSMUST00000026313 Abhd6 protein_coding Interval_37734 chr12 71494472 71494698 + 0 NA intron (ENSMUSG00000113630.1, intron 1 of 5) lincRNA-intron (ENSMUSG00000113441.1, intron 5 of 5) 6300 ENSMUSG00000113630.1 ENSMUSG00000113630 ENSMUST00000220948 4930404H11Rik lincRNA Interval_141370 chr6 127740690 127741258 + 0 NA intron (ENSMUSG00000030350.8, intron 1 of 9) protein_coding-intron (ENSMUSG00000030350.8, intron 1 of 9) -22774 ENSMUSG00000106833.1 ENSMUSG00000106833 ENSMUST00000200687 Gm42739 processed_pseudogene Interval_77512 chr17 90571245 90572163 + 0 NA intron (ENSMUSG00000024109.18, intron 1 of 3) protein_coding-intron (ENSMUSG00000024109.18, intron 13 of 20) -3947 ENSMUSG00000093716.1 ENSMUSG00000093716 ENSMUST00000175818 Gm19815 processed_pseudogene Interval_99419 chr2 160887213 160888547 + 0 NA promoter-TSS (ENSMUSG00000027412.12) protein_coding-promoter-TSS (ENSMUSG00000027412.12) 148 ENSMUSG00000085303.3 ENSMUSG00000085303 ENSMUST00000142212 Gm16751 antisense Interval_7744 chr1 133385439 133386772 + 0 NA promoter-TSS (ENSMUSG00000070643.11) protein_coding-promoter-TSS (ENSMUSG00000070643.11) 20341 ENSMUSG00000070644.13 ENSMUSG00000070644 ENSMUST00000131450 Etnk2 protein_coding Interval_129878 chr5 122888501 122888760 + 0 NA promoter-TSS (ENSMUSG00000029475.17) protein_coding-promoter-TSS (ENSMUSG00000029475.17) 19770 ENSMUSG00000105979.1 ENSMUSG00000105979 ENSMUST00000196235 Gm43411 TEC Interval_162541 chr9 4046423 4046594 + 0 NA Intergenic Intergenic -167414 ENSMUSG00000110691.1 ENSMUSG00000110691 ENSMUST00000211927 Gm5363 processed_pseudogene Interval_44346 chr13 43938587 43939525 + 0 NA Intergenic Intergenic -9823 ENSMUSG00000113671.1 ENSMUSG00000113671 ENSMUST00000222566 Gm2233 lincRNA Interval_9361 chr1 156584176 156584482 + 0 NA exon (ENSMUSG00000104293.1, exon 1 of 1) TEC-exon (ENSMUSG00000104293.1, exon 1 of 1) 1221 ENSMUSG00000104293.1 ENSMUSG00000104293 ENSMUST00000195501 Gm38043 TEC Interval_38311 chr12 77056684 77057284 + 0 NA Intergenic Intergenic -14783 ENSMUSG00000112030.1 ENSMUSG00000112030 ENSMUST00000219319 Gm35189 lincRNA Interval_153011 chr7 140855909 140858420 + 0 NA promoter-TSS (ENSMUSG00000025484.9) protein_coding-promoter-TSS (ENSMUSG00000025484.9) 198 ENSMUSG00000025484.9 ENSMUSG00000025484 ENSMUST00000209318 Bet1l protein_coding Interval_156549 chr8 50878359 50878643 + 0 NA intron (ENSMUSG00000110246.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000110246.1, intron 2 of 6) 38496 ENSMUSG00000110246.1 ENSMUSG00000110246 ENSMUST00000211313 C130073E24Rik lincRNA Interval_96330 chr2 121688000 121688203 + 0 NA intron (ENSMUSG00000027238.17, intron 1 of 7) protein_coding-intron (ENSMUSG00000027238.17, intron 1 of 13) 13624 ENSMUSG00000081264.1 ENSMUSG00000081264 ENSMUST00000117683 Gm14021 processed_pseudogene Interval_91991 chr2 52335504 52336201 + 0 NA promoter-TSS (ENSMUSG00000026950.18) protein_coding-promoter-TSS (ENSMUSG00000026950.18) -90 ENSMUSG00000026950.18 ENSMUSG00000026950 ENSMUST00000136769 Neb protein_coding Interval_37160 chr12 59074670 59075068 + 0 NA TTS (ENSMUSG00000020994.5) protein_coding-TTS (ENSMUSG00000020994.5) -6150 ENSMUSG00000066487.3 ENSMUSG00000066487 ENSMUST00000085368 Gm5786 processed_pseudogene Interval_84148 chr19 7528975 7529410 + 0 NA intron (ENSMUSG00000024759.14, intron 10 of 12) protein_coding-intron (ENSMUSG00000024759.14, intron 9 of 12) -28285 ENSMUSG00000060675.13 ENSMUSG00000060675 ENSMUST00000136756 Plaat3 protein_coding Interval_9460 chr1 157386953 157387145 + 0 NA intron (ENSMUSG00000070565.11, intron 1 of 2) protein_coding-intron (ENSMUSG00000070565.11, intron 1 of 17) -2720 ENSMUSG00000087632.1 ENSMUSG00000087632 ENSMUST00000154261 Gm6058 processed_pseudogene Interval_150299 chr7 109446708 109447669 + 0 NA Intergenic Intergenic -8107 ENSMUSG00000031027.15 ENSMUSG00000031027 ENSMUST00000121378 Stk33 protein_coding Interval_43099 chr13 23993654 23994717 + 0 NA Intergenic Intergenic 28371 ENSMUSG00000021338.17 ENSMUSG00000021338 ENSMUST00000136517 Carmil1 protein_coding Interval_982 chr1 13631233 13632646 + 0 NA intron (ENSMUSG00000025937.6, intron 1 of 1) protein_coding-intron (ENSMUSG00000025937.6, intron 4 of 6) 6472 ENSMUSG00000025937.6 ENSMUSG00000025937 ENSMUST00000156222 Lactb2 protein_coding Interval_165542 chr9 49203527 49203718 + 0 NA Intergenic Intergenic -46909 ENSMUSG00000054156.8 ENSMUSG00000054156 ENSMUST00000067007 Gm4894 protein_coding Interval_90235 chr2 29194307 29195810 + 0 NA intron (ENSMUSG00000035513.19, intron 5 of 5) protein_coding-intron (ENSMUSG00000035513.19, intron 8 of 8) 53067 ENSMUSG00000035513.19 ENSMUSG00000035513 ENSMUST00000149096 Ntng2 protein_coding Interval_153104 chr7 141379708 141381655 + 0 NA Intergenic Intergenic 5943 ENSMUSG00000077716.1 ENSMUSG00000077716 ENSMUST00000104528 Gm25725 snoRNA Interval_37572 chr12 69961906 69963224 + 0 NA promoter-TSS (ENSMUSG00000079076.2) transcribed_processed_pseudogene-promoter-TSS (ENSMUSG00000079076.2) -6729 ENSMUSG00000079076.2 ENSMUSG00000079076 ENSMUST00000221248 Gm3086 transcribed_processed_pseudogene Interval_174057 chrX 133687118 133689459 + 0 NA exon (ENSMUSG00000051323.16, exon 1 of 6) protein_coding-exon (ENSMUSG00000051323.16, exon 1 of 6) -3297 ENSMUSG00000051323.16 ENSMUSG00000051323 ENSMUST00000193485 Pcdh19 protein_coding Interval_155368 chr8 32599588 32599806 + 0 NA intron (ENSMUSG00000062991.9, intron 1 of 12) protein_coding-intron (ENSMUSG00000062991.9, intron 1 of 8) 342785 ENSMUSG00000079070.10 ENSMUSG00000079070 ENSMUST00000180220 Gm3985 lincRNA Interval_125547 chr5 69856282 69856561 + 0 NA Intergenic Intergenic -62674 ENSMUSG00000084579.1 ENSMUSG00000084579 ENSMUST00000122630 Gm23661 snRNA Interval_31777 chr11 102795224 102795417 + 0 NA Intergenic Intergenic 10468 ENSMUSG00000034520.14 ENSMUSG00000034520 ENSMUST00000131164 Gjc1 protein_coding Interval_141941 chr6 135689951 135690426 + 0 NA Intergenic Intergenic 31275 ENSMUSG00000107396.2 ENSMUSG00000107396 ENSMUST00000203439 4930425L21Rik lincRNA Interval_45993 chr13 59852751 59853055 + 0 NA Intergenic Intergenic -20739 ENSMUSG00000114669.1 ENSMUSG00000114669 ENSMUST00000225895 Gm48384 lincRNA Interval_118182 chr4 129399663 129401893 + 0 NA Intergenic Intergenic 20934 ENSMUSG00000082468.1 ENSMUSG00000082468 ENSMUST00000118912 Gm12980 processed_pseudogene Interval_135278 chr6 37990266 37991675 + 0 NA intron (ENSMUSG00000029830.15, intron 9 of 10) protein_coding-intron (ENSMUSG00000029830.15, intron 14 of 15) 27641 ENSMUSG00000029830.15 ENSMUSG00000029830 ENSMUST00000040486 Svopl protein_coding Interval_151723 chr7 126260572 126261268 + 0 NA intron (ENSMUSG00000042978.11, intron 1 of 3) protein_coding-intron (ENSMUSG00000042978.11, intron 1 of 3) 12058 ENSMUSG00000042978.11 ENSMUSG00000042978 ENSMUST00000206541 Sbk1 protein_coding Interval_98727 chr2 154530375 154530866 + 0 NA promoter-TSS (ENSMUSG00000038533.15) protein_coding-promoter-TSS (ENSMUSG00000038533.15) -16465 ENSMUSG00000038523.10 ENSMUSG00000038523 ENSMUST00000109709 1700003F12Rik protein_coding Interval_52696 chr14 48673584 48675195 + 0 NA promoter-TSS (ENSMUSG00000021848.16) protein_coding-promoter-TSS (ENSMUSG00000021848.16) -490 ENSMUSG00000115599.1 ENSMUSG00000115599 ENSMUST00000227889 Gm49154 TEC Interval_80228 chr18 38395912 38396238 + 0 NA Intergenic Intergenic 17209 ENSMUSG00000117986.1 ENSMUSG00000117986 ENSMUST00000235696 Gm50344 processed_pseudogene Interval_71869 chr17 26628500 26629103 + 0 NA intron (ENSMUSG00000001576.15, intron 4 of 11) protein_coding-intron (ENSMUSG00000001576.15, intron 5 of 8) -3701 ENSMUSG00000091078.1 ENSMUSG00000091078 ENSMUST00000165911 Gm17218 antisense Interval_70318 chr17 8444079 8444756 + 0 NA Intergenic Intergenic 9006 ENSMUSG00000062327.10 ENSMUSG00000062327 ENSMUST00000177118 T protein_coding Interval_45745 chr13 57553820 57554153 + 0 NA intron (ENSMUSG00000056222.15, intron 6 of 10) protein_coding-intron (ENSMUSG00000056222.15, intron 4 of 9) 277308 ENSMUSG00000114411.1 ENSMUSG00000114411 ENSMUST00000224461 Gm48176 processed_pseudogene Interval_42061 chr13 7130236 7131829 + 0 NA Intergenic Intergenic -10529 ENSMUSG00000076407.1 ENSMUSG00000076407 ENSMUST00000102452 Gm22689 miRNA Interval_24871 chr11 40670839 40671450 + 0 NA Intergenic Intergenic 2712 ENSMUSG00000082087.4 ENSMUSG00000082087 ENSMUST00000122180 Gm12138 processed_pseudogene Interval_81304 chr18 57731931 57732194 + 0 NA TTS (ENSMUSG00000058925.11) protein_coding-TTS (ENSMUSG00000058925.11) 50248 ENSMUSG00000105951.1 ENSMUSG00000105951 ENSMUST00000196794 Gm44491 miRNA Interval_62864 chr15 97491583 97492599 + 0 NA Intergenic Intergenic 66199 ENSMUSG00000116131.1 ENSMUSG00000116131 ENSMUST00000230522 Gm49506 processed_pseudogene Interval_70583 chr17 12135270 12135735 + 0 NA intron (ENSMUSG00000023827.8, intron 1 of 3) protein_coding-intron (ENSMUSG00000023827.8, intron 1 of 8) 16173 ENSMUSG00000023827.8 ENSMUSG00000023827 ENSMUST00000167905 Agpat4 protein_coding Interval_3 GL456210.1 7194 7511 + 0 NA NA NA NA NA Interval_124803 chr5 54246214 54246679 + 0 NA Intergenic Intergenic -103545 ENSMUSG00000105912.1 ENSMUSG00000105912 ENSMUST00000197424 Gm10440 lincRNA Interval_91042 chr2 34642265 34642660 + 0 NA Intergenic Intergenic 7778 ENSMUSG00000087635.3 ENSMUSG00000087635 ENSMUST00000117516 Gm13414 processed_pseudogene Interval_15616 chr10 52327606 52328455 + 0 NA Intergenic Intergenic 15627 ENSMUSG00000112550.1 ENSMUSG00000112550 ENSMUST00000218299 Gm6627 processed_pseudogene Interval_163339 chr9 20951592 20953463 + 0 NA promoter-TSS (ENSMUSG00000004099.16) protein_coding-promoter-TSS (ENSMUSG00000004099.16) 78 ENSMUSG00000004099.16 ENSMUSG00000004099 ENSMUST00000216135 Dnmt1 protein_coding Interval_154573 chr8 20979258 20980410 + 0 NA Intergenic Intergenic -35124 ENSMUSG00000079120.3 ENSMUSG00000079120 ENSMUST00000110758 AY761185 protein_coding Interval_153762 chr8 7541843 7542722 + 0 NA intron (ENSMUSG00000109260.1, intron 2 of 2) lincRNA-intron (ENSMUSG00000109260.1, intron 2 of 2) 17026 ENSMUSG00000098978.1 ENSMUSG00000098978 ENSMUST00000184755 Gm27545 misc_RNA Interval_141725 chr6 134051172 134052111 + 0 NA intron (ENSMUSG00000030199.16, intron 1 of 4) protein_coding-intron (ENSMUSG00000030199.16, intron 1 of 7) -21713 ENSMUSG00000108214.1 ENSMUSG00000108214 ENSMUST00000204995 Gm43982 TEC Interval_137660 chr6 78114954 78115657 + 0 NA Intergenic Intergenic -45718 ENSMUSG00000097964.1 ENSMUSG00000097964 ENSMUST00000183058 Gm21045 processed_pseudogene Interval_101299 chr2 180244284 180244704 + 0 NA Intergenic Intergenic -12885 ENSMUSG00000039001.12 ENSMUSG00000039001 ENSMUST00000145043 Rps21 protein_coding Interval_141876 chr6 135064759 135067414 + 0 NA intron (ENSMUSG00000046733.7, intron 1 of 3) protein_coding-intron (ENSMUSG00000046733.7, intron 1 of 3) 435 ENSMUSG00000046733.7 ENSMUSG00000046733 ENSMUST00000050104 Gprc5a protein_coding Interval_58627 chr15 36669383 36671065 + 0 NA intron (ENSMUSG00000115127.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000115127.1, intron 1 of 1) -19879 ENSMUSG00000115834.1 ENSMUSG00000115834 ENSMUST00000226323 Gm10385 lincRNA Interval_59257 chr15 50143437 50143976 + 0 NA Intergenic Intergenic -143192 ENSMUSG00000115478.1 ENSMUSG00000115478 ENSMUST00000227182 Gm49198 lincRNA Interval_37905 chr12 72967778 72968267 + 0 NA Intergenic Intergenic 17127 ENSMUSG00000102197.1 ENSMUSG00000102197 ENSMUST00000195404 Gm38170 TEC Interval_114571 chr4 82587668 82587924 + 0 NA promoter-TSS (ENSMUSG00000084851.1) sense_intronic-promoter-TSS (ENSMUSG00000084851.1) -477 ENSMUSG00000084851.1 ENSMUSG00000084851 ENSMUST00000137477 Gm11267 sense_intronic Interval_60649 chr15 75921068 75921859 + 0 NA promoter-TSS (ENSMUSG00000022571.9) protein_coding-promoter-TSS (ENSMUSG00000022571.9) 97 ENSMUSG00000022571.9 ENSMUSG00000022571 ENSMUST00000053918 Pycrl protein_coding Interval_130164 chr5 124635084 124635793 + 0 NA intron (ENSMUSG00000038023.12, intron 2 of 3) protein_coding-intron (ENSMUSG00000038023.12, intron 2 of 19) 6862 ENSMUSG00000038023.12 ENSMUSG00000038023 ENSMUST00000197161 Atp6v0a2 protein_coding Interval_125712 chr5 73479918 73480804 + 0 NA promoter-TSS (ENSMUSG00000051674.15) protein_coding-promoter-TSS (ENSMUSG00000051674.15) -3008 ENSMUSG00000082039.2 ENSMUSG00000082039 ENSMUST00000119247 Gm15653 processed_pseudogene Interval_12562 chr10 3180681 3181480 + 0 NA Intergenic Intergenic 5060 ENSMUSG00000111625.1 ENSMUSG00000111625 ENSMUST00000213719 Gm48097 processed_pseudogene Interval_90191 chr2 28917398 28918322 + 0 NA Intergenic Intergenic -2355 ENSMUSG00000026805.14 ENSMUSG00000026805 ENSMUST00000174027 Barhl1 protein_coding Interval_96411 chr2 122286285 122286712 + 0 NA promoter-TSS (ENSMUSG00000068452.8) protein_coding-promoter-TSS (ENSMUSG00000068452.8) 11951 ENSMUSG00000068452.8 ENSMUSG00000068452 ENSMUST00000155820 Duox2 protein_coding Interval_62055 chr15 86126673 86127336 + 0 NA exon (ENSMUSG00000035900.18, exon 8 of 19) protein_coding-exon (ENSMUSG00000035900.18, exon 8 of 19) -22580 ENSMUSG00000088357.1 ENSMUSG00000088357 ENSMUST00000157732 Gm24011 misc_RNA Interval_29135 chr11 80527520 80527914 + 0 NA intron (ENSMUSG00000035441.14, intron 21 of 21) protein_coding-intron (ENSMUSG00000035441.14, intron 21 of 21) -18611 ENSMUSG00000085078.1 ENSMUSG00000085078 ENSMUST00000133400 C030013C21Rik sense_intronic Interval_106222 chr3 94748650 94749029 + 0 NA intron (ENSMUSG00000081355.1, intron 1 of 5) unprocessed_pseudogene-intron (ENSMUSG00000081355.1, intron 1 of 5) 9277 ENSMUSG00000081355.1 ENSMUSG00000081355 ENSMUST00000118050 Gm15264 unprocessed_pseudogene Interval_141376 chr6 127793860 127796212 + 0 NA Intergenic Intergenic -6893 ENSMUSG00000104804.1 ENSMUSG00000104804 ENSMUST00000198609 Mir7233 miRNA Interval_38741 chr12 81779844 81781877 + 0 NA promoter-TSS (ENSMUSG00000113303.1) bidirectional_promoter_lncRNA-promoter-TSS (ENSMUSG00000113303.1) 149 ENSMUSG00000042724.8 ENSMUSG00000042724 ENSMUST00000223292 Map3k9 protein_coding Interval_118245 chr4 129781969 129783178 + 0 NA Intergenic Intergenic -20137 ENSMUSG00000099322.1 ENSMUSG00000099322 ENSMUST00000183434 Gm28017 miRNA Interval_174839 chrX 169319899 169321023 + 0 NA promoter-TSS (ENSMUSG00000031352.10) protein_coding-promoter-TSS (ENSMUSG00000031352.10) -89 ENSMUSG00000031352.10 ENSMUSG00000031352 ENSMUST00000112115 Hccs protein_coding Interval_58436 chr15 34508237 34508709 + 0 NA intron (ENSMUSG00000022325.14, intron 6 of 15) protein_coding-intron (ENSMUSG00000022325.14, intron 6 of 16) -5697 ENSMUSG00000022325.14 ENSMUSG00000022325 ENSMUST00000153061 Pop1 protein_coding Interval_5765 chr1 91584926 91585165 + 0 NA Intergenic Intergenic -26361 ENSMUSG00000101705.1 ENSMUSG00000101705 ENSMUST00000188800 Gm28380 lincRNA Interval_94317 chr2 88437350 88437934 + 0 NA Intergenic Intergenic -11471 ENSMUSG00000075125.2 ENSMUSG00000075125 ENSMUST00000102619 Olfr1181 protein_coding Interval_112705 chr4 44252036 44253237 + 0 NA Intergenic Intergenic -31369 ENSMUSG00000092677.1 ENSMUSG00000092677 ENSMUST00000174936 Mir5106 miRNA Interval_74798 chr17 56603276 56604973 + 0 NA promoter-TSS (ENSMUSG00000071054.12) protein_coding-promoter-TSS (ENSMUSG00000071054.12) -1616 ENSMUSG00000071054.12 ENSMUSG00000071054 ENSMUST00000183318 Safb protein_coding Interval_73599 chr17 40934020 40935225 + 0 NA promoter-TSS (ENSMUSG00000023921.9) protein_coding-promoter-TSS (ENSMUSG00000023921.9) -71 ENSMUSG00000023919.8 ENSMUSG00000023919 ENSMUST00000130890 Cenpq protein_coding Interval_41291 chr12 112516580 112517652 + 0 NA promoter-TSS (ENSMUSG00000054013.6) protein_coding-promoter-TSS (ENSMUSG00000054013.6) -369 ENSMUSG00000054013.6 ENSMUSG00000054013 ENSMUST00000222836 Tmem179 protein_coding Interval_38302 chr12 76991256 76992129 + 0 NA intron (ENSMUSG00000112857.1, intron 2 of 3) lincRNA-intron (ENSMUSG00000112857.1, intron 2 of 3) 19232 ENSMUSG00000112857.1 ENSMUSG00000112857 ENSMUST00000219581 Gm35041 lincRNA Interval_103151 chr3 35992729 35993227 + 0 NA intron (ENSMUSG00000027709.9, intron 2 of 5) protein_coding-intron (ENSMUSG00000027709.9, intron 4 of 18) -6935 ENSMUSG00000086392.9 ENSMUSG00000086392 ENSMUST00000124469 Mccc1os antisense Interval_84497 chr19 11888270 11888805 + 0 NA intron (ENSMUSG00000060878.4, intron 1 of 2) protein_coding-intron (ENSMUSG00000060878.4, intron 1 of 3) 1972 ENSMUSG00000060878.4 ENSMUSG00000060878 ENSMUST00000072784 Olfr1420 protein_coding Interval_1002 chr1 13789338 13790441 + 0 NA Intergenic Intergenic -3010 ENSMUSG00000097711.1 ENSMUSG00000097711 ENSMUST00000180415 Gm5523 processed_pseudogene Interval_30980 chr11 97567154 97567489 + 0 NA intron (ENSMUSG00000038453.17, intron 1 of 1) protein_coding-intron (ENSMUSG00000038453.17, intron 1 of 17) 7905 ENSMUSG00000038453.17 ENSMUSG00000038453 ENSMUST00000145845 Srcin1 protein_coding Interval_165624 chr9 50485396 50486053 + 0 NA Intergenic Intergenic -8803 ENSMUSG00000032068.14 ENSMUSG00000032068 ENSMUST00000188047 Plet1 protein_coding Interval_62574 chr15 94801406 94801947 + 0 NA intron (ENSMUSG00000063296.5, intron 3 of 7) protein_coding-intron (ENSMUSG00000063296.5, intron 3 of 7) -120290 ENSMUSG00000095169.1 ENSMUSG00000095169 ENSMUST00000103977 Gm25546 snoRNA Interval_137195 chr6 69732878 69733235 + 0 NA Intergenic Intergenic -5918 ENSMUSG00000076563.2 ENSMUSG00000076563 ENSMUST00000103364 Igkv5-48 IG_V_gene Interval_133639 chr6 7925016 7925207 + 0 NA Intergenic Intergenic 45548 ENSMUSG00000084418.1 ENSMUSG00000084418 ENSMUST00000122469 Gm22276 snoRNA Interval_123551 chr5 33449751 33450654 + 0 NA Intergenic Intergenic -12738 ENSMUSG00000107248.1 ENSMUSG00000107248 ENSMUST00000200726 Gm43851 lincRNA Interval_168197 chr9 77916806 77918110 + 0 NA promoter-TSS (ENSMUSG00000032349.13) protein_coding-promoter-TSS (ENSMUSG00000032349.13) 24 ENSMUSG00000032349.13 ENSMUSG00000032349 ENSMUST00000134072 Elovl5 protein_coding Interval_85733 chr19 30174154 30175782 + 0 NA intron (ENSMUSG00000024827.10, intron 1 of 18) protein_coding-intron (ENSMUSG00000024827.10, intron 1 of 24) 14348 ENSMUSG00000058607.4 ENSMUSG00000058607 ENSMUST00000080982 Rpl31-ps20 processed_pseudogene Interval_104910 chr3 78954484 78954778 + 0 NA Intergenic Intergenic 12168 ENSMUSG00000037096.6 ENSMUSG00000037096 ENSMUST00000036976 Gm9762 processed_pseudogene Interval_96621 chr2 126585843 126587105 + 0 NA intron (ENSMUSG00000027359.16, intron 9 of 9) protein_coding-intron (ENSMUSG00000027359.16, intron 9 of 9) 21714 ENSMUSG00000027359.16 ENSMUSG00000027359 ENSMUST00000150947 Slc27a2 protein_coding Interval_83744 chr19 4332632 4334383 + 0 NA intron (ENSMUSG00000054611.17, intron 1 of 3) protein_coding-intron (ENSMUSG00000054611.17, intron 12 of 20) -5096 ENSMUSG00000054611.17 ENSMUSG00000054611 ENSMUST00000176495 Kdm2a protein_coding Interval_20016 chr10 111996768 111997224 + 0 NA exon (ENSMUSG00000056888.11, exon 1 of 6) protein_coding-exon (ENSMUSG00000056888.11, exon 1 of 6) -1181 ENSMUSG00000056888.11 ENSMUSG00000056888 ENSMUST00000174201 Glipr1 protein_coding Interval_21854 chr11 4761834 4762417 + 0 NA Intergenic Intergenic -15347 ENSMUSG00000009075.2 ENSMUSG00000009075 ENSMUST00000009219 Cabp7 protein_coding Interval_163661 chr9 23533597 23534425 + 0 NA Intergenic Intergenic -242481 ENSMUSG00000111041.1 ENSMUSG00000111041 ENSMUST00000215669 Gm3011 processed_pseudogene Interval_169012 chr9 90194968 90195194 + 0 NA promoter-TSS (ENSMUSG00000032363.15) protein_coding-promoter-TSS (ENSMUSG00000032363.15) 26544 ENSMUSG00000081520.1 ENSMUSG00000081520 ENSMUST00000120385 Gm16200 processed_pseudogene Interval_29886 chr11 87509636 87510172 + 0 NA intron (ENSMUSG00000010342.16, intron 11 of 30) protein_coding-intron (ENSMUSG00000010342.16, intron 11 of 30) 38536 ENSMUSG00000105115.1 ENSMUSG00000105115 ENSMUST00000196353 Rnu3b2 snoRNA Interval_65448 chr16 22395001 22395578 + 0 NA intron (ENSMUSG00000013089.15, intron 9 of 12) protein_coding-intron (ENSMUSG00000013089.15, intron 9 of 12) 6540 ENSMUSG00000013089.15 ENSMUSG00000013089 ENSMUST00000170393 Etv5 protein_coding Interval_129714 chr5 121925769 121926978 + 0 NA intron (ENSMUSG00000042589.18, intron 1 of 6) protein_coding-intron (ENSMUSG00000042589.18, intron 2 of 22) -60310 ENSMUSG00000042589.18 ENSMUSG00000042589 ENSMUST00000125267 Cux2 protein_coding Interval_57193 chr15 7288786 7289776 + 0 NA intron (ENSMUSG00000042961.13, intron 6 of 15) protein_coding-intron (ENSMUSG00000042961.13, intron 6 of 21) -34513 ENSMUSG00000042961.13 ENSMUSG00000042961 ENSMUST00000159726 Egflam protein_coding Interval_144698 chr7 27591102 27593129 + 0 NA promoter-TSS (ENSMUSG00000004056.15) protein_coding-promoter-TSS (ENSMUSG00000004056.15) 369 ENSMUSG00000004056.15 ENSMUSG00000004056 ENSMUST00000136981 Akt2 protein_coding Interval_83335 chr18 84313354 84314120 + 0 NA intron (ENSMUSG00000048410.17, intron 5 of 5) protein_coding-intron (ENSMUSG00000048410.17, intron 2 of 2) 62409 ENSMUSG00000102951.1 ENSMUSG00000102951 ENSMUST00000193817 Gm37216 TEC Interval_111331 chr4 19131043 19131529 + 0 NA Intergenic Intergenic -8760 ENSMUSG00000073991.4 ENSMUSG00000073991 ENSMUST00000137780 Cnbd1 protein_coding Interval_115288 chr4 95355510 95355755 + 0 NA Intergenic Intergenic 47158 ENSMUSG00000100129.1 ENSMUSG00000100129 ENSMUST00000187014 Gm29064 lincRNA Interval_108284 chr3 123305377 123306731 + 0 NA intron (ENSMUSG00000039234.11, intron 5 of 19) protein_coding-intron (ENSMUSG00000039234.11, intron 8 of 22) 38564 ENSMUSG00000039234.11 ENSMUSG00000039234 ENSMUST00000196482 Sec24d protein_coding Interval_119400 chr4 137476128 137477044 + 0 NA intron (ENSMUSG00000028763.18, intron 1 of 96) protein_coding-intron (ENSMUSG00000028763.18, intron 1 of 96) 23302 ENSMUSG00000041399.3 ENSMUSG00000041399 ENSMUST00000048893 1700013G24Rik protein_coding Interval_170564 chr9 108725089 108725463 + 0 NA intron (ENSMUSG00000032601.13, intron 4 of 9) protein_coding-intron (ENSMUSG00000032601.13, intron 4 of 10) 13582 ENSMUSG00000065674.1 ENSMUSG00000065674 ENSMUST00000083740 Gm24259 snRNA Interval_170966 chr9 113360913 113361394 + 0 NA Intergenic Intergenic -8784 ENSMUSG00000110784.1 ENSMUSG00000110784 ENSMUST00000215648 Gm39436 lincRNA Interval_120760 chr4 150500771 150501162 + 0 NA intron (ENSMUSG00000039852.17, intron 8 of 22) protein_coding-intron (ENSMUSG00000039852.17, intron 2 of 16) 67578 ENSMUSG00000085213.1 ENSMUSG00000085213 ENSMUST00000128800 Gm13091 antisense Interval_169470 chr9 97823272 97823777 + 0 NA intron (ENSMUSG00000032452.12, intron 1 of 16) protein_coding-intron (ENSMUSG00000032452.12, intron 1 of 17) 106631 ENSMUSG00000104462.1 ENSMUSG00000104462 ENSMUST00000191863 Gm37661 TEC Interval_91250 chr2 36428697 36429352 + 0 NA Intergenic Intergenic 10077 ENSMUSG00000094464.2 ENSMUSG00000094464 ENSMUST00000071437 Olfr339 protein_coding Interval_156535 chr8 50056673 50057628 + 0 NA Intergenic Intergenic -43766 ENSMUSG00000110375.1 ENSMUSG00000110375 ENSMUST00000209853 Gm45323 lincRNA Interval_107036 chr3 103085819 103086845 + 0 NA intron (ENSMUSG00000070385.12, intron 4 of 4) protein_coding-intron (ENSMUSG00000070385.12, intron 5 of 15) 3456 ENSMUSG00000089075.1 ENSMUSG00000089075 ENSMUST00000158450 Gm23820 misc_RNA Interval_46262 chr13 63186250 63187871 + 0 NA intron (ENSMUSG00000021458.17, intron 3 of 3) protein_coding-intron (ENSMUSG00000021458.17, intron 6 of 15) -23890 ENSMUSG00000113853.1 ENSMUSG00000113853 ENSMUST00000221858 Gm47583 TEC Interval_88037 chr19 58186551 58186833 + 0 NA Intergenic Intergenic -17447 ENSMUSG00000087002.1 ENSMUSG00000087002 ENSMUST00000143595 Gm16277 antisense Interval_79656 chr18 34289669 34290079 + 0 NA exon (ENSMUSG00000005871.15, exon 8 of 9) protein_coding-exon (ENSMUSG00000005871.15, exon 8 of 9) -41302 ENSMUSG00000014504.16 ENSMUSG00000014504 ENSMUST00000142010 Srp19 protein_coding Interval_161712 chr8 122268726 122269961 + 0 NA promoter-TSS (ENSMUSG00000043903.4) protein_coding-promoter-TSS (ENSMUSG00000043903.4) 10723 ENSMUSG00000043903.4 ENSMUSG00000043903 ENSMUST00000055537 Zfp469 protein_coding Interval_159244 chr8 92125525 92125886 + 0 NA Intergenic Intergenic 32561 ENSMUSG00000110380.1 ENSMUSG00000110380 ENSMUST00000210508 Gm45332 lincRNA Interval_160659 chr8 111393293 111394207 + 0 NA promoter-TSS (ENSMUSG00000033579.16) protein_coding-promoter-TSS (ENSMUSG00000033579.16) 68 ENSMUSG00000033579.16 ENSMUSG00000033579 ENSMUST00000162463 Fa2h protein_coding Interval_101320 chr2 180428447 180428752 + 0 NA Intergenic Intergenic -27735 ENSMUSG00000038963.15 ENSMUSG00000038963 ENSMUST00000128367 Slco4a1 protein_coding Interval_76364 chr17 79580337 79581008 + 0 NA Intergenic Intergenic -91728 ENSMUSG00000036368.8 ENSMUSG00000036368 ENSMUST00000224097 Rmdn2 protein_coding Interval_168507 chr9 82843196 82844162 + 0 NA intron (ENSMUSG00000032251.12, intron 2 of 3) protein_coding-intron (ENSMUSG00000032251.12, intron 1 of 2) 14139 ENSMUSG00000032251.12 ENSMUSG00000032251 ENSMUST00000034783 Irak1bp1 protein_coding Interval_93205 chr2 71155600 71156500 + 0 NA Intergenic Intergenic 38127 ENSMUSG00000027015.4 ENSMUSG00000027015 ENSMUST00000028403 Cybrd1 protein_coding Interval_32512 chr11 108031089 108031519 + 0 NA intron (ENSMUSG00000050965.14, intron 5 of 16) protein_coding-intron (ENSMUSG00000050965.14, intron 5 of 16) -18499 ENSMUSG00000050965.14 ENSMUSG00000050965 ENSMUST00000134725 Prkca protein_coding Interval_172658 chrX 41310890 41311341 + 0 NA Intergenic Intergenic -61144 ENSMUSG00000083515.1 ENSMUSG00000083515 ENSMUST00000121134 Gm14577 processed_pseudogene Interval_149982 chr7 104199571 104200406 + 0 NA Intergenic Intergenic -3449 ENSMUSG00000081859.3 ENSMUSG00000081859 ENSMUST00000121432 Olfr650-ps1 polymorphic_pseudogene Interval_445 chr1 5349887 5351339 + 0 NA Intergenic Intergenic 42874 ENSMUSG00000104046.1 ENSMUSG00000104046 ENSMUST00000193241 Gm37567 TEC Interval_34025 chr11 120079265 120079466 + 0 NA intron (ENSMUSG00000039781.14, intron 3 of 25) protein_coding-intron (ENSMUSG00000039781.14, intron 3 of 25) 7462 ENSMUSG00000039781.14 ENSMUSG00000039781 ENSMUST00000144128 Cep131 protein_coding Interval_166935 chr9 64007700 64008108 + 0 NA intron (ENSMUSG00000036867.7, intron 2 of 4) protein_coding-intron (ENSMUSG00000036867.7, intron 2 of 3) 14128 ENSMUSG00000036867.7 ENSMUSG00000036867 ENSMUST00000179458 Smad6 protein_coding Interval_152486 chr7 133391510 133391731 + 0 NA Intergenic Intergenic -58419 ENSMUSG00000109619.1 ENSMUSG00000109619 ENSMUST00000209700 Gm45672 lincRNA Interval_60053 chr15 64267153 64267398 + 0 NA intron (ENSMUSG00000022377.16, intron 2 of 4) protein_coding-intron (ENSMUSG00000022377.16, intron 3 of 30) -47222 ENSMUSG00000115752.1 ENSMUSG00000115752 ENSMUST00000226773 1700010G06Rik antisense Interval_46732 chr13 69696103 69696820 + 0 NA intron (ENSMUSG00000113299.1, intron 2 of 5) lincRNA-intron (ENSMUSG00000113299.1, intron 2 of 5) 1215 ENSMUSG00000113299.1 ENSMUSG00000113299 ENSMUST00000223164 Gm35618 lincRNA Interval_6640 chr1 118472499 118472861 + 0 NA intron (ENSMUSG00000064302.13, intron 1 of 6) protein_coding-intron (ENSMUSG00000064302.13, intron 8 of 39) 6911 ENSMUSG00000100770.1 ENSMUSG00000100770 ENSMUST00000190678 Gm28466 processed_pseudogene Interval_172334 chrX 13095411 13095658 + 0 NA intron (ENSMUSG00000031010.17, intron 3 of 16) protein_coding-intron (ENSMUSG00000031010.17, intron 2 of 44) -33526 ENSMUSG00000031010.17 ENSMUSG00000031010 ENSMUST00000133997 Usp9x protein_coding Interval_52452 chr14 46569402 46569647 + 0 NA exon (ENSMUSG00000085123.2, exon 4 of 5) lincRNA-exon (ENSMUSG00000085123.2, exon 4 of 5) 13221 ENSMUSG00000085380.1 ENSMUSG00000085380 ENSMUST00000129910 E130120K24Rik lincRNA Interval_146044 chr7 43450396 43451037 + 0 NA intron (ENSMUSG00000004610.4, intron 1 of 5) protein_coding-intron (ENSMUSG00000004610.4, intron 1 of 5) 2643 ENSMUSG00000108618.1 ENSMUSG00000108618 ENSMUST00000206666 Gm44816 TEC Interval_116862 chr4 117799610 117800310 + 0 NA Intergenic Intergenic 25696 ENSMUSG00000083507.1 ENSMUSG00000083507 ENSMUST00000117298 Gm12842 processed_pseudogene Interval_41756 chr12 118728494 118728846 + 0 NA Intergenic Intergenic 4385 ENSMUSG00000113546.1 ENSMUSG00000113546 ENSMUST00000223539 Gm18441 processed_pseudogene Interval_26722 chr11 60000760 60001930 + 0 NA intron (ENSMUSG00000000301.16, intron 1 of 3) protein_coding-intron (ENSMUSG00000000301.16, intron 2 of 6) -29835 ENSMUSG00000000301.16 ENSMUSG00000000301 ENSMUST00000133028 Pemt protein_coding Interval_102411 chr3 24984499 24984748 + 0 NA intron (ENSMUSG00000102758.3, intron 1 of 2) protein_coding-intron (ENSMUSG00000102758.3, intron 1 of 2) 23082 ENSMUSG00000105009.1 ENSMUSG00000105009 ENSMUST00000198854 Gm42774 processed_pseudogene Interval_159331 chr8 93634645 93635380 + 0 NA Intergenic Intergenic -6388 ENSMUSG00000110534.1 ENSMUSG00000110534 ENSMUST00000212213 Gm45708 lincRNA Interval_85146 chr19 23162153 23163867 + 0 NA intron (ENSMUSG00000033863.2, intron 1 of 1) protein_coding-intron (ENSMUSG00000033863.2, intron 1 of 1) 13579 ENSMUSG00000080626.1 ENSMUSG00000080626 ENSMUST00000116976 Mir1192 miRNA Interval_66808 chr16 37796999 37797236 + 0 NA intron (ENSMUSG00000022816.11, intron 1 of 2) protein_coding-intron (ENSMUSG00000022816.11, intron 2 of 10) 20062 ENSMUSG00000022816.11 ENSMUSG00000022816 ENSMUST00000123077 Fstl1 protein_coding Interval_56338 chr14 117837436 117838341 + 0 NA intron (ENSMUSG00000058571.11, intron 4 of 9) protein_coding-intron (ENSMUSG00000058571.11, intron 4 of 8) 115959 ENSMUSG00000098648.1 ENSMUSG00000098648 ENSMUST00000183564 Mir6239 miRNA Interval_139862 chr6 111862910 111863594 + 0 NA Intergenic Intergenic -128858 ENSMUSG00000089490.1 ENSMUSG00000089490 ENSMUST00000158865 Gm26362 misc_RNA Interval_31245 chr11 99104910 99107236 + 0 NA Intergenic Intergenic -30732 ENSMUSG00000017607.9 ENSMUSG00000017607 ENSMUST00000123303 Tns4 protein_coding Interval_129137 chr5 117669907 117670591 + 0 NA intron (ENSMUSG00000061578.8, intron 6 of 20) protein_coding-intron (ENSMUSG00000061578.8, intron 6 of 20) 149550 ENSMUSG00000107199.1 ENSMUSG00000107199 ENSMUST00000201553 Gm42550 TEC Interval_104469 chr3 66043719 66044018 + 0 NA Intergenic Intergenic -12349 ENSMUSG00000103369.1 ENSMUSG00000103369 ENSMUST00000192096 Gm6546 processed_pseudogene Interval_148783 chr7 87246169 87247318 + 0 NA promoter-TSS (ENSMUSG00000030562.17) protein_coding-promoter-TSS (ENSMUSG00000030562.17) -69 ENSMUSG00000030562.17 ENSMUSG00000030562 ENSMUST00000144267 Nox4 protein_coding Interval_41339 chr12 112928343 112930513 + 0 NA promoter-TSS (ENSMUSG00000002799.6) protein_coding-promoter-TSS (ENSMUSG00000002799.6) -8887 ENSMUSG00000098338.1 ENSMUSG00000098338 ENSMUST00000184711 Mir6941 miRNA Interval_109590 chr3 144811999 144812305 + 0 NA intron (ENSMUSG00000105900.1, intron 3 of 3) protein_coding-intron (ENSMUSG00000028262.13, intron 6 of 13) 3776 ENSMUSG00000105900.1 ENSMUSG00000105900 ENSMUST00000198543 Gm43240 antisense Interval_133809 chr6 12549612 12552041 + 0 NA intron (ENSMUSG00000032625.14, intron 2 of 27) protein_coding-intron (ENSMUSG00000032625.14, intron 1 of 5) -14692 ENSMUSG00000083794.1 ENSMUSG00000083794 ENSMUST00000118647 Gm16123 processed_pseudogene Interval_108066 chr3 121313182 121313639 + 0 NA intron (ENSMUSG00000039887.11, intron 2 of 2) protein_coding-intron (ENSMUSG00000039887.11, intron 2 of 3) 21583 ENSMUSG00000039887.11 ENSMUSG00000039887 ENSMUST00000198341 Alg14 protein_coding Interval_42476 chr13 13983063 13984089 + 0 NA intron (ENSMUSG00000039242.10, intron 4 of 10) protein_coding-intron (ENSMUSG00000039242.10, intron 5 of 11) -12239 ENSMUSG00000096192.2 ENSMUSG00000096192 ENSMUST00000221021 Gm18856 transcribed_processed_pseudogene Interval_146599 chr7 47229129 47229693 + 0 NA Intergenic Intergenic 23417 ENSMUSG00000074111.4 ENSMUSG00000074111 ENSMUST00000098436 Mrgpra9 protein_coding Interval_17068 chr10 71050681 71051951 + 0 NA intron (ENSMUSG00000014329.14, intron 2 of 20) protein_coding-intron (ENSMUSG00000014329.14, intron 2 of 21) -31560 ENSMUSG00000090212.1 ENSMUSG00000090212 ENSMUST00000160178 Gm15647 antisense Interval_96310 chr2 121533166 121534442 + 0 NA TTS (ENSMUSG00000027242.14) protein_coding-TTS (ENSMUSG00000027242.14) 17547 ENSMUSG00000027238.17 ENSMUSG00000027238 ENSMUST00000153704 Frmd5 protein_coding Interval_143092 chr6 149266586 149266797 + 0 NA Intergenic Intergenic 20082 ENSMUSG00000107894.1 ENSMUSG00000107894 ENSMUST00000205001 Gm10388 TEC Interval_83822 chr19 4889808 4890242 + 0 NA TTS (ENSMUSG00000006464.9) protein_coding-TTS (ENSMUSG00000006464.9) 10258 ENSMUSG00000006463.13 ENSMUSG00000006463 ENSMUST00000162754 Zdhhc24 protein_coding Interval_34126 chr11 120783666 120785404 + 0 NA promoter-TSS (ENSMUSG00000025158.7) protein_coding-promoter-TSS (ENSMUSG00000025158.7) 250 ENSMUSG00000025156.17 ENSMUSG00000025156 ENSMUST00000156723 Gps1 protein_coding Interval_65180 chr16 20381663 20382453 + 0 NA intron (ENSMUSG00000022822.16, intron 5 of 6) protein_coding-intron (ENSMUSG00000022822.16, intron 12 of 29) 16890 ENSMUSG00000022822.16 ENSMUSG00000022822 ENSMUST00000231522 Abcc5 protein_coding Interval_69046 chr16 90290836 90291979 + 0 NA Intergenic Intergenic -6904 ENSMUSG00000022983.16 ENSMUSG00000022983 ENSMUST00000231776 Scaf4 protein_coding Interval_32654 chr11 109444572 109446061 + 0 NA intron (ENSMUSG00000020610.17, intron 1 of 1) protein_coding-intron (ENSMUSG00000020610.17, intron 8 of 8) -7171 ENSMUSG00000085326.1 ENSMUSG00000085326 ENSMUST00000148057 Gm15642 antisense Interval_173559 chrX 99403042 99403269 + 0 NA Intergenic Intergenic 15740 ENSMUSG00000085053.1 ENSMUSG00000085053 ENSMUST00000152025 Gm14809 lincRNA Interval_136244 chr6 52248398 52249693 + 0 NA promoter-TSS (ENSMUSG00000099248.1) misc_RNA-promoter-TSS (ENSMUSG00000099248.1) -254 ENSMUSG00000099248.1 ENSMUSG00000099248 ENSMUST00000183562 Gm27543 misc_RNA Interval_79873 chr18 35678911 35679403 + 0 NA intron (ENSMUSG00000024350.6, intron 3 of 3) protein_coding-intron (ENSMUSG00000024350.6, intron 7 of 7) -16994 ENSMUSG00000117874.1 ENSMUSG00000117874 ENSMUST00000235292 Gm50318 protein_coding Interval_41219 chr12 111896374 111897402 + 0 NA intron (ENSMUSG00000021285.15, intron 1 of 3) protein_coding-intron (ENSMUSG00000021285.15, intron 1 of 16) 10731 ENSMUSG00000021285.15 ENSMUSG00000021285 ENSMUST00000220927 Ppp1r13b protein_coding Interval_130108 chr5 124327130 124328583 + 0 NA promoter-TSS (ENSMUSG00000047635.6) protein_coding-promoter-TSS (ENSMUSG00000047635.6) -4 ENSMUSG00000038126.17 ENSMUSG00000038126 ENSMUST00000156013 Mphosph9 protein_coding Interval_144188 chr7 19864702 19866572 + 0 NA Intergenic Intergenic 5801 ENSMUSG00000109214.1 ENSMUSG00000109214 ENSMUST00000207269 Gm44659 lincRNA Interval_163493 chr9 21706344 21707296 + 0 NA Intergenic Intergenic 16630 ENSMUSG00000097155.1 ENSMUSG00000097155 ENSMUST00000181400 Gm26511 lincRNA Interval_136283 chr6 52490407 52490787 + 0 NA Intergenic Intergenic -1854 ENSMUSG00000107895.1 ENSMUSG00000107895 ENSMUST00000203771 1700094M24Rik lincRNA Interval_170500 chr9 108325435 108326060 + 0 NA intron (ENSMUSG00000007815.13, intron 2 of 5) protein_coding-intron (ENSMUSG00000007815.13, intron 2 of 5) -5499 ENSMUSG00000102554.1 ENSMUSG00000102554 ENSMUST00000191755 Gm37568 processed_pseudogene Interval_78464 chr18 13027031 13027661 + 0 NA Intergenic Intergenic 20309 ENSMUSG00000037346.5 ENSMUSG00000037346 ENSMUST00000234565 Hrh4 protein_coding Interval_21146 chr10 126888849 126890070 + 0 NA exon (ENSMUSG00000025436.12, exon 6 of 6) protein_coding-exon (ENSMUSG00000025436.12, exon 6 of 6) -3654 ENSMUSG00000112423.1 ENSMUSG00000112423 ENSMUST00000218775 Gm6333 processed_pseudogene Interval_136824 chr6 61012615 61012933 + 0 NA Intergenic Intergenic 4962 ENSMUSG00000108098.1 ENSMUSG00000108098 ENSMUST00000204855 Gm18838 processed_pseudogene Interval_166514 chr9 60288939 60289385 + 0 NA intron (ENSMUSG00000032289.15, intron 5 of 16) protein_coding-intron (ENSMUSG00000032289.15, intron 6 of 17) -44980 ENSMUSG00000111296.1 ENSMUSG00000111296 ENSMUST00000214235 2010001M07Rik antisense Interval_4423 chr1 74063212 74064178 + 0 NA intron (ENSMUSG00000055322.16, intron 3 of 32) protein_coding-intron (ENSMUSG00000055322.16, intron 3 of 34) 34981 ENSMUSG00000055322.16 ENSMUSG00000055322 ENSMUST00000190599 Tns1 protein_coding Interval_146055 chr7 43562051 43563286 + 0 NA TTS (ENSMUSG00000108411.1) lincRNA-TTS (ENSMUSG00000108411.1) 412 ENSMUSG00000056592.14 ENSMUSG00000056592 ENSMUST00000005597 Zfp658 protein_coding Interval_156883 chr8 61427217 61428193 + 0 NA Intergenic Intergenic -46318 ENSMUSG00000109610.1 ENSMUSG00000109610 ENSMUST00000210343 Gm7432 processed_pseudogene Interval_159877 chr8 104564754 104565502 + 0 NA Intergenic Intergenic -8141 ENSMUSG00000110607.1 ENSMUSG00000110607 ENSMUST00000212317 Gm45843 lincRNA Interval_115371 chr4 98254610 98255076 + 0 NA Intergenic Intergenic 13732 ENSMUSG00000083644.1 ENSMUSG00000083644 ENSMUST00000119234 Gm12787 processed_pseudogene Interval_19889 chr10 110942074 110943150 + 0 NA TTS (ENSMUSG00000035798.14) protein_coding-TTS (ENSMUSG00000035798.14) 22422 ENSMUSG00000020186.7 ENSMUSG00000020186 ENSMUST00000220301 Csrp2 protein_coding Interval_13501 chr10 18788151 18789658 + 0 NA intron (ENSMUSG00000111474.1, intron 3 of 4) antisense-intron (ENSMUSG00000111474.1, intron 3 of 4) -2111 ENSMUSG00000044624.7 ENSMUSG00000044624 ENSMUST00000055107 Gm4922 protein_coding Interval_157996 chr8 77723708 77724919 + 0 NA exon (ENSMUSG00000031616.7, exon 1 of 8) protein_coding-exon (ENSMUSG00000031616.7, exon 1 of 8) 151 ENSMUSG00000031616.7 ENSMUSG00000031616 ENSMUST00000146561 Ednra protein_coding Interval_7730 chr1 133325749 133327348 + 0 NA promoter-TSS (ENSMUSG00000116158.1) protein_coding-promoter-TSS (ENSMUSG00000116158.1) -664 ENSMUSG00000116158.1 ENSMUSG00000116158 ENSMUST00000178033 Kiss1 protein_coding Interval_24111 chr11 30440708 30440877 + 0 NA intron (ENSMUSG00000040919.13, intron 4 of 5) protein_coding-intron (ENSMUSG00000040919.13, intron 3 of 4) 31035 ENSMUSG00000040919.13 ENSMUSG00000040919 ENSMUST00000152718 4930505A04Rik protein_coding Interval_133506 chr6 6005593 6006471 + 0 NA promoter-TSS (ENSMUSG00000029757.16) protein_coding-promoter-TSS (ENSMUSG00000029757.16) -28639 ENSMUSG00000085416.1 ENSMUSG00000085416 ENSMUST00000130004 1700019G24Rik antisense Interval_57025 chr15 4479501 4481172 + 0 NA intron (ENSMUSG00000049148.8, intron 2 of 2) protein_coding-intron (ENSMUSG00000049148.8, intron 1 of 2) 104845 ENSMUSG00000049148.8 ENSMUSG00000049148 ENSMUST00000061925 Plcxd3 protein_coding Interval_71772 chr17 25985169 25986438 + 0 NA promoter-TSS (ENSMUSG00000037326.10) protein_coding-promoter-TSS (ENSMUSG00000037326.10) -123 ENSMUSG00000037326.10 ENSMUSG00000037326 ENSMUST00000212702 Capn15 protein_coding Interval_2632 chr1 42686034 42687166 + 0 NA intron (ENSMUSG00000060424.14, intron 1 of 2) lincRNA-intron (ENSMUSG00000060424.14, intron 1 of 3) 8225 ENSMUSG00000060424.14 ENSMUSG00000060424 ENSMUST00000177136 Pantr1 lincRNA Interval_37023 chr12 56528190 56529559 + 0 NA exon (ENSMUSG00000112343.1, exon 1 of 7) processed_transcript-exon (ENSMUSG00000112343.1, exon 1 of 7) 553 ENSMUSG00000112343.1 ENSMUSG00000112343 ENSMUST00000219423 Sfta3-ps processed_transcript Interval_26305 chr11 55957054 55958691 + 0 NA intron (ENSMUSG00000086020.1, intron 1 of 4) antisense-intron (ENSMUSG00000086020.1, intron 1 of 4) 83138 ENSMUSG00000037393.2 ENSMUSG00000037393 ENSMUST00000037682 Nmur2 protein_coding Interval_92067 chr2 52968067 52969354 + 0 NA intron (ENSMUSG00000036053.17, intron 1 of 26) protein_coding-intron (ENSMUSG00000036053.17, intron 1 of 26) 110850 ENSMUSG00000036053.17 ENSMUSG00000036053 ENSMUST00000050719 Fmnl2 protein_coding Interval_57599 chr15 12707987 12709152 + 0 NA intron (ENSMUSG00000022197.16, intron 2 of 4) protein_coding-intron (ENSMUSG00000022197.16, intron 2 of 4) 13445 ENSMUSG00000095842.1 ENSMUSG00000095842 ENSMUST00000178350 Gm24302 miRNA Interval_88408 chr2 4872757 4873729 + 0 NA Intergenic Intergenic -10814 ENSMUSG00000026662.13 ENSMUSG00000026662 ENSMUST00000140045 Sephs1 protein_coding Interval_18677 chr10 89205437 89206378 + 0 NA intron (ENSMUSG00000035189.17, intron 3 of 6) protein_coding-intron (ENSMUSG00000035189.17, intron 1 of 7) 51683 ENSMUSG00000035189.17 ENSMUSG00000035189 ENSMUST00000180843 Ano4 protein_coding Interval_101886 chr3 10381097 10381983 + 0 NA intron (ENSMUSG00000027536.6, intron 1 of 4) protein_coding-intron (ENSMUSG00000027536.6, intron 1 of 4) 14582 ENSMUSG00000027536.6 ENSMUSG00000027536 ENSMUST00000191826 Chmp4c protein_coding Interval_71357 chr17 22635553 22635831 + 0 NA Intergenic Intergenic 34741 ENSMUSG00000094921.2 ENSMUSG00000094921 ENSMUST00000234826 Vmn2r112 protein_coding Interval_85947 chr19 33849593 33851339 + 0 NA Intergenic Intergenic -7868 ENSMUSG00000085934.1 ENSMUSG00000085934 ENSMUST00000155015 Gm8988 unprocessed_pseudogene Interval_140386 chr6 117739548 117739984 + 0 NA intron (ENSMUSG00000099869.6, intron 2 of 4) lincRNA-intron (ENSMUSG00000099869.6, intron 2 of 3) -22503 ENSMUSG00000099869.6 ENSMUSG00000099869 ENSMUST00000187642 1700030F04Rik lincRNA Interval_75173 chr17 64331362 64332663 + 0 NA promoter-TSS (ENSMUSG00000024083.16) protein_coding-promoter-TSS (ENSMUSG00000024083.16) -125 ENSMUSG00000024083.16 ENSMUSG00000024083 ENSMUST00000232842 Pja2 protein_coding Interval_110175 chr3 153964787 153964992 + 0 NA Intergenic Intergenic -27080 ENSMUSG00000062908.12 ENSMUSG00000062908 ENSMUST00000135724 Acadm protein_coding Interval_66881 chr16 38324314 38324992 + 0 NA intron (ENSMUSG00000022805.17, intron 7 of 8) protein_coding-intron (ENSMUSG00000022805.17, intron 7 of 16) 17159 ENSMUSG00000022805.17 ENSMUSG00000022805 ENSMUST00000114740 Maats1 protein_coding Interval_32843 chr11 111818054 111820027 + 0 NA Intergenic Intergenic -18164 ENSMUSG00000086752.1 ENSMUSG00000086752 ENSMUST00000124855 Gm11674 lincRNA Interval_44427 chr13 44775174 44775946 + 0 NA intron (ENSMUSG00000038518.15, intron 2 of 4) protein_coding-intron (ENSMUSG00000038518.15, intron 2 of 18) 44190 ENSMUSG00000038518.15 ENSMUSG00000038518 ENSMUST00000173003 Jarid2 protein_coding Interval_62693 chr15 96319413 96319636 + 0 NA intron (ENSMUSG00000033237.19, intron 3 of 4) protein_coding-intron (ENSMUSG00000033237.19, intron 3 of 20) -35029 ENSMUSG00000097536.2 ENSMUSG00000097536 ENSMUST00000185067 2610037D02Rik lincRNA Interval_31311 chr11 99620176 99620397 + 0 NA exon (ENSMUSG00000062278.2, exon 1 of 1) protein_coding-exon (ENSMUSG00000062278.2, exon 1 of 1) 149 ENSMUSG00000062278.2 ENSMUSG00000062278 ENSMUST00000073853 Gm11562 protein_coding Interval_42832 chr13 20123258 20124262 + 0 NA intron (ENSMUSG00000041112.17, intron 1 of 13) protein_coding-intron (ENSMUSG00000041112.17, intron 1 of 21) -127956 ENSMUSG00000050243.6 ENSMUSG00000050243 ENSMUST00000091762 Gm5446 processed_pseudogene Interval_13846 chr10 23804618 23807748 + 0 NA TTS (ENSMUSG00000037455.16) protein_coding-TTS (ENSMUSG00000037455.16) 9197 ENSMUSG00000037455.16 ENSMUSG00000037455 ENSMUST00000143931 Slc18b1 protein_coding Interval_33278 chr11 115674052 115674740 + 0 NA intron (ENSMUSG00000059923.13, intron 2 of 3) protein_coding-intron (ENSMUSG00000059923.13, intron 2 of 5) -16837 ENSMUSG00000084277.1 ENSMUSG00000084277 ENSMUST00000118223 Gm11702 processed_pseudogene Interval_169947 chr9 103137435 103137645 + 0 NA intron (ENSMUSG00000032549.7, intron 1 of 3) protein_coding-intron (ENSMUSG00000032549.7, intron 1 of 7) 17172 ENSMUSG00000102461.1 ENSMUSG00000102461 ENSMUST00000195473 Gm37166 TEC Interval_66490 chr16 34262493 34263462 + 0 NA promoter-TSS (ENSMUSG00000061751.16) protein_coding-promoter-TSS (ENSMUSG00000061751.16) -166949 ENSMUSG00000061751.16 ENSMUSG00000061751 ENSMUST00000132569 Kalrn protein_coding Interval_11908 chr1 186975210 186975580 + 0 NA Intergenic Intergenic -7792 ENSMUSG00000104312.1 ENSMUSG00000104312 ENSMUST00000191895 Gm37912 antisense Interval_52314 chr14 44742383 44743270 + 0 NA intron (ENSMUSG00000091923.8, intron 1 of 5) protein_coding-intron (ENSMUSG00000091923.8, intron 1 of 5) -7614 ENSMUSG00000115321.1 ENSMUSG00000115321 ENSMUST00000228539 Gm34060 lincRNA Interval_4229 chr1 71795475 71795759 + 0 NA Intergenic Intergenic 50993 ENSMUSG00000102689.1 ENSMUSG00000102689 ENSMUST00000194017 Gm37217 TEC Interval_76930 chr17 85010860 85011509 + 0 NA intron (ENSMUSG00000061130.13, intron 5 of 5) protein_coding-intron (ENSMUSG00000061130.13, intron 5 of 5) -17192 ENSMUSG00000024131.8 ENSMUSG00000024131 ENSMUST00000024944 Slc3a1 protein_coding Interval_85746 chr19 30247084 30247738 + 0 NA Intergenic Intergenic 14106 ENSMUSG00000093236.1 ENSMUSG00000093236 ENSMUST00000175495 Gm24108 miRNA Interval_157225 chr8 68194055 68194871 + 0 NA intron (ENSMUSG00000030465.19, intron 2 of 2) protein_coding-intron (ENSMUSG00000030465.19, intron 1 of 16) 17564 ENSMUSG00000030465.19 ENSMUSG00000030465 ENSMUST00000178529 Psd3 protein_coding Interval_16427 chr10 62832287 62833974 + 0 NA intron (ENSMUSG00000047146.17, intron 5 of 12) protein_coding-intron (ENSMUSG00000047146.17, intron 4 of 10) 26864 ENSMUSG00000112309.1 ENSMUSG00000112309 ENSMUST00000220243 Gm48353 TEC Interval_10739 chr1 173853895 173854124 + 0 NA intron (ENSMUSG00000090272.9, intron 3 of 4) protein_coding-intron (ENSMUSG00000090272.9, intron 3 of 4) -3229 ENSMUSG00000102433.1 ENSMUSG00000102433 ENSMUST00000191904 Gm38050 unprocessed_pseudogene Interval_163610 chr9 22510841 22511130 + 0 NA intron (ENSMUSG00000035919.16, intron 5 of 22) protein_coding-intron (ENSMUSG00000035919.16, intron 4 of 21) -1472 ENSMUSG00000035919.16 ENSMUSG00000035919 ENSMUST00000124076 Bbs9 protein_coding Interval_77944 chr18 5974278 5974558 + 0 NA Intergenic Intergenic 29235 ENSMUSG00000117508.1 ENSMUSG00000117508 ENSMUST00000234953 Gm34804 lincRNA Interval_28994 chr11 79783704 79784638 + 0 NA intron (ENSMUSG00000086474.2, intron 1 of 1) lincRNA-intron (ENSMUSG00000086474.2, intron 4 of 4) 21001 ENSMUSG00000086474.2 ENSMUSG00000086474 ENSMUST00000162268 9130204K15Rik lincRNA Interval_94841 chr2 96317949 96318143 + 0 NA promoter-TSS (ENSMUSG00000050587.14) protein_coding-promoter-TSS (ENSMUSG00000050587.14) 184611 ENSMUSG00000082327.1 ENSMUSG00000082327 ENSMUST00000120750 Gm13801 processed_pseudogene Interval_127027 chr5 99708686 99708984 + 0 NA intron (ENSMUSG00000089743.7, intron 2 of 2) protein_coding-intron (ENSMUSG00000089809.9, intron 1 of 1) 19977 ENSMUSG00000089809.9 ENSMUSG00000089809 ENSMUST00000161148 Rasgef1b protein_coding Interval_83850 chr19 5085301 5085505 + 0 NA promoter-TSS (ENSMUSG00000061451.13) protein_coding-promoter-TSS (ENSMUSG00000061451.13) 84 ENSMUSG00000061451.13 ENSMUSG00000061451 ENSMUST00000136372 Tmem151a protein_coding Interval_3495 chr1 58961189 58961837 + 0 NA intron (ENSMUSG00000026028.12, intron 1 of 1) protein_coding-intron (ENSMUSG00000026028.12, intron 1 of 15) -12009 ENSMUSG00000026027.13 ENSMUSG00000026027 ENSMUST00000152318 Stradb protein_coding Interval_64138 chr16 8677018 8677445 + 0 NA Intergenic Intergenic -5076 ENSMUSG00000008393.9 ENSMUSG00000008393 ENSMUST00000008537 Carhsp1 protein_coding Interval_154461 chr8 18333427 18333697 + 0 NA intron (ENSMUSG00000110056.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000110056.1, intron 1 of 1) 776 ENSMUSG00000110056.1 ENSMUSG00000110056 ENSMUST00000211704 1700014L14Rik lincRNA Interval_105445 chr3 86566254 86566797 + 0 NA intron (ENSMUSG00000028080.16, intron 1 of 17) protein_coding-intron (ENSMUSG00000028080.16, intron 40 of 56) -17896 ENSMUSG00000057777.4 ENSMUSG00000057777 ENSMUST00000191695 Mab21l2 protein_coding Interval_6097 chr1 96846735 96847323 + 0 NA intron (ENSMUSG00000040693.7, intron 2 of 12) protein_coding-intron (ENSMUSG00000040693.7, intron 2 of 12) 25142 ENSMUSG00000040693.7 ENSMUSG00000040693 ENSMUST00000071985 Slco4c1 protein_coding Interval_94583 chr2 92433595 92434444 + 0 NA promoter-TSS (ENSMUSG00000068742.11) protein_coding-promoter-TSS (ENSMUSG00000068742.11) -1627 ENSMUSG00000068742.11 ENSMUSG00000068742 ENSMUST00000144842 Cry2 protein_coding Interval_49309 chr13 110555284 110555834 + 0 NA Intergenic Intergenic -72437 ENSMUSG00000109853.1 ENSMUSG00000109853 ENSMUST00000211420 Gm33045 lincRNA Interval_64522 chr16 13045047 13045525 + 0 NA Intergenic Intergenic -87105 ENSMUSG00000022545.13 ENSMUSG00000022545 ENSMUST00000156393 Ercc4 protein_coding Interval_37188 chr12 59280197 59280593 + 0 NA Intergenic Intergenic -11569 ENSMUSG00000098229.1 ENSMUSG00000098229 ENSMUST00000182374 Gm7719 processed_pseudogene Interval_32324 chr11 106959237 106959550 + 0 NA Intergenic Intergenic 13697 ENSMUSG00000086481.1 ENSMUSG00000086481 ENSMUST00000150366 Gm11707 lincRNA Interval_87965 chr19 57417704 57418729 + 0 NA TTS (ENSMUSG00000117927.1) lincRNA-TTS (ENSMUSG00000117927.1) 5278 ENSMUSG00000117927.1 ENSMUSG00000117927 ENSMUST00000237878 Gm50271 lincRNA Interval_138660 chr6 90905087 90905983 + 0 NA promoter-TSS (ENSMUSG00000099662.1) processed_pseudogene-promoter-TSS (ENSMUSG00000099662.1) -284 ENSMUSG00000099662.1 ENSMUSG00000099662 ENSMUST00000117103 Ppp1r2-ps2 processed_pseudogene Interval_4150 chr1 70825278 70825493 + 0 NA intron (ENSMUSG00000045648.15, intron 5 of 5) protein_coding-intron (ENSMUSG00000045648.15, intron 3 of 3) 99462 ENSMUSG00000045648.15 ENSMUSG00000045648 ENSMUST00000162182 Vwc2l protein_coding Interval_112450 chr4 41348613 41349594 + 0 NA promoter-TSS (ENSMUSG00000028437.14) protein_coding-promoter-TSS (ENSMUSG00000028437.14) -3152 ENSMUSG00000088528.1 ENSMUSG00000088528 ENSMUST00000157903 Gm26084 snRNA Interval_31434 chr11 100639736 100640913 + 0 NA exon (ENSMUSG00000109112.1, exon 2 of 2) unitary_pseudogene-exon (ENSMUSG00000109112.1, exon 2 of 2) 2793 ENSMUSG00000109112.1 ENSMUSG00000109112 ENSMUST00000207052 Gm44544 unitary_pseudogene Interval_155150 chr8 27075900 27076402 + 0 NA Intergenic Intergenic 25377 ENSMUSG00000031485.15 ENSMUSG00000031485 ENSMUST00000211756 Plpbp protein_coding Interval_5452 chr1 88957166 88958070 + 0 NA Intergenic Intergenic 25299 ENSMUSG00000101333.1 ENSMUSG00000101333 ENSMUST00000188327 Gm4753 processed_pseudogene Interval_34772 chr12 10804112 10804690 + 0 NA Intergenic Intergenic -79895 ENSMUSG00000112515.1 ENSMUSG00000112515 ENSMUST00000219622 Gm4928 processed_pseudogene Interval_154337 chr8 14726865 14727918 + 0 NA exon (ENSMUSG00000047495.15, exon 5 of 15) protein_coding-exon (ENSMUSG00000047495.15, exon 5 of 15) 20036 ENSMUSG00000084945.1 ENSMUSG00000084945 ENSMUST00000155211 C030037F17Rik antisense Interval_2979 chr1 51845277 51846653 + 0 NA intron (ENSMUSG00000018417.14, intron 3 of 6) protein_coding-intron (ENSMUSG00000018417.14, intron 3 of 30) 3153 ENSMUSG00000101724.1 ENSMUSG00000101724 ENSMUST00000186428 Gm29453 sense_intronic Interval_160826 chr8 112933967 112934262 + 0 NA intron (ENSMUSG00000110455.1, intron 1 of 4) antisense-intron (ENSMUSG00000110455.1, intron 1 of 4) 70883 ENSMUSG00000110455.1 ENSMUSG00000110455 ENSMUST00000213082 Gm45904 antisense Interval_74934 chr17 57512679 57513023 + 0 NA exon (ENSMUSG00000090655.2, exon 6 of 6) protein_coding-exon (ENSMUSG00000090655.2, exon 6 of 6) 32654 ENSMUSG00000090655.2 ENSMUSG00000090655 ENSMUST00000234162 Vmn2r120 protein_coding Interval_154334 chr8 14704561 14704879 + 0 NA intron (ENSMUSG00000047495.15, intron 4 of 14) protein_coding-intron (ENSMUSG00000047495.15, intron 4 of 14) 42707 ENSMUSG00000084945.1 ENSMUSG00000084945 ENSMUST00000155211 C030037F17Rik antisense Interval_32677 chr11 109581428 109582796 + 0 NA TTS (ENSMUSG00000041895.15) protein_coding-TTS (ENSMUSG00000041895.15) 29855 ENSMUSG00000041895.15 ENSMUSG00000041895 ENSMUST00000153738 Wipi1 protein_coding Interval_121142 chr4 153470045 153470929 + 0 NA intron (ENSMUSG00000039546.9, intron 1 of 5) protein_coding-intron (ENSMUSG00000039546.9, intron 1 of 5) 11692 ENSMUSG00000039546.9 ENSMUSG00000039546 ENSMUST00000149177 Ajap1 protein_coding Interval_88723 chr2 10002855 10003454 + 0 NA intron (ENSMUSG00000025782.12, intron 2 of 6) protein_coding-intron (ENSMUSG00000025782.12, intron 2 of 6) -44684 ENSMUSG00000103570.1 ENSMUSG00000103570 ENSMUST00000194765 C630004M23Rik TEC Interval_53596 chr14 59704361 59704616 + 0 NA intron (ENSMUSG00000021983.16, intron 32 of 35) protein_coding-intron (ENSMUSG00000021983.16, intron 32 of 35) 61940 ENSMUSG00000114593.1 ENSMUSG00000114593 ENSMUST00000224256 Gm19716 transcribed_processed_pseudogene Interval_154386 chr8 15189606 15190038 + 0 NA promoter-TSS (ENSMUSG00000109886.1) lincRNA-promoter-TSS (ENSMUSG00000109886.1) -210 ENSMUSG00000109886.1 ENSMUSG00000109886 ENSMUST00000211017 Gm45271 lincRNA Interval_131218 chr5 135877162 135878529 + 0 NA Intergenic Intergenic 2188 ENSMUSG00000095502.1 ENSMUSG00000095502 ENSMUST00000179641 Gm22450 snRNA Interval_3450 chr1 58444850 58445824 + 0 NA promoter-TSS (ENSMUSG00000026036.17) protein_coding-promoter-TSS (ENSMUSG00000026036.17) 102 ENSMUSG00000026035.15 ENSMUSG00000026035 ENSMUST00000188896 Ppil3 protein_coding Interval_97897 chr2 145149447 145149763 + 0 NA Intergenic Intergenic -18314 ENSMUSG00000063873.10 ENSMUSG00000063873 ENSMUST00000131123 Slc24a3 protein_coding Interval_16138 chr10 60979260 60979520 + 0 NA Intergenic Intergenic 18667 ENSMUSG00000080526.1 ENSMUSG00000080526 ENSMUST00000116876 Mir466j miRNA Interval_110573 chr4 4054255 4055397 + 0 NA Intergenic Intergenic 22696 ENSMUSG00000071019.11 ENSMUSG00000071019 ENSMUST00000108383 Sdr16c6 protein_coding Interval_146567 chr7 46870988 46871831 + 0 NA intron (ENSMUSG00000030851.15, intron 4 of 4) protein_coding-intron (ENSMUSG00000030851.15, intron 4 of 7) 10123 ENSMUSG00000030851.15 ENSMUSG00000030851 ENSMUST00000126004 Ldhc protein_coding Interval_89805 chr2 25563880 25565289 + 0 NA exon (ENSMUSG00000026941.16, exon 25 of 29) protein_coding-exon (ENSMUSG00000026941.16, exon 25 of 29) 5670 ENSMUSG00000026941.16 ENSMUSG00000026941 ENSMUST00000142811 Mamdc4 protein_coding Interval_17092 chr10 71308140 71308584 + 0 NA Intergenic Intergenic -2383 ENSMUSG00000093732.1 ENSMUSG00000093732 ENSMUST00000177104 Gm20609 lincRNA Interval_116194 chr4 108603091 108603364 + 0 NA promoter-TSS (ENSMUSG00000028587.18) protein_coding-promoter-TSS (ENSMUSG00000028587.18) 15205 ENSMUSG00000028587.18 ENSMUSG00000028587 ENSMUST00000129931 Orc1 protein_coding Interval_95933 chr2 118536566 118537630 + 0 NA intron (ENSMUSG00000040093.16, intron 1 of 1) protein_coding-intron (ENSMUSG00000040093.16, intron 4 of 4) 8218 ENSMUSG00000040093.16 ENSMUSG00000040093 ENSMUST00000138342 Bmf protein_coding Interval_23239 chr11 20793941 20795294 + 0 NA Intergenic Intergenic 36439 ENSMUSG00000042363.14 ENSMUSG00000042363 ENSMUST00000132928 Lgalsl protein_coding Interval_93157 chr2 70708924 70710612 + 0 NA intron (ENSMUSG00000014959.12, intron 8 of 9) protein_coding-intron (ENSMUSG00000014959.12, intron 8 of 9) 8136 ENSMUSG00000041997.16 ENSMUSG00000041997 ENSMUST00000124629 Tlk1 protein_coding Interval_156812 chr8 60719010 60719284 + 0 NA promoter-TSS (ENSMUSG00000109992.1) lincRNA-promoter-TSS (ENSMUSG00000109992.1) -144 ENSMUSG00000109992.1 ENSMUSG00000109992 ENSMUST00000211162 Gm45650 lincRNA Interval_106419 chr3 96084202 96084877 + 0 NA Intergenic Intergenic -2332 ENSMUSG00000105995.1 ENSMUSG00000105995 ENSMUST00000199987 Gm43554 processed_pseudogene Interval_95794 chr2 116399798 116400841 + 0 NA Intergenic Intergenic 128171 ENSMUSG00000081787.1 ENSMUSG00000081787 ENSMUST00000120190 Gm13991 processed_pseudogene Interval_7445 chr1 131403921 131404246 + 0 NA intron (ENSMUSG00000026425.15, intron 4 of 4) protein_coding-intron (ENSMUSG00000026425.15, intron 4 of 22) 5130 ENSMUSG00000101778.1 ENSMUSG00000101778 ENSMUST00000191427 Gm29488 sense_intronic Interval_769 chr1 10833735 10834264 + 0 NA Intergenic Intergenic 28718 ENSMUSG00000100212.1 ENSMUSG00000100212 ENSMUST00000189483 Gm5522 processed_pseudogene Interval_104799 chr3 73707745 73708778 + 0 NA promoter-TSS (ENSMUSG00000027792.11) protein_coding-promoter-TSS (ENSMUSG00000027792.11) 6 ENSMUSG00000027792.11 ENSMUSG00000027792 ENSMUST00000153917 Bche protein_coding Interval_139191 chr6 97059604 97061113 + 0 NA promoter-TSS (ENSMUSG00000046500.8) protein_coding-promoter-TSS (ENSMUSG00000046500.8) 35 ENSMUSG00000046500.8 ENSMUSG00000046500 ENSMUST00000203930 Tafa4 protein_coding Interval_11005 chr1 178072638 178073592 + 0 NA intron (ENSMUSG00000091476.8, intron 8 of 23) protein_coding-intron (ENSMUSG00000091476.8, intron 8 of 19) -44976 ENSMUSG00000095731.1 ENSMUSG00000095731 ENSMUST00000178972 Gm25312 snRNA Interval_86069 chr19 36226766 36229023 + 0 NA intron (ENSMUSG00000117990.1, intron 1 of 2) processed_transcript-intron (ENSMUSG00000117990.1, intron 1 of 2) -23833 ENSMUSG00000118032.1 ENSMUSG00000118032 ENSMUST00000236788 Gm50147 lincRNA Interval_129220 chr5 118268818 118269490 + 0 NA Intergenic Intergenic 2705 ENSMUSG00000095477.1 ENSMUSG00000095477 ENSMUST00000104098 Gm25076 snoRNA Interval_76969 chr17 85256697 85257792 + 0 NA intron (ENSMUSG00000071037.6, intron 3 of 10) protein_coding-intron (ENSMUSG00000071037.6, intron 3 of 10) 166638 ENSMUSG00000071037.6 ENSMUSG00000071037 ENSMUST00000234501 Camkmt protein_coding Interval_89107 chr2 16451781 16452955 + 0 NA intron (ENSMUSG00000026748.13, intron 1 of 12) protein_coding-intron (ENSMUSG00000026748.13, intron 1 of 13) -186328 ENSMUSG00000026748.13 ENSMUSG00000026748 ENSMUST00000126173 Plxdc2 protein_coding Interval_87280 chr19 47358726 47359980 + 0 NA intron (ENSMUSG00000053617.12, intron 5 of 13) protein_coding-intron (ENSMUSG00000053617.12, intron 5 of 14) 51006 ENSMUSG00000053617.12 ENSMUSG00000053617 ENSMUST00000237828 Sh3pxd2a protein_coding Interval_13262 chr10 13693786 13694040 + 0 NA intron (ENSMUSG00000019806.13, intron 3 of 5) protein_coding-intron (ENSMUSG00000019806.13, intron 3 of 5) 66715 ENSMUSG00000112055.1 ENSMUSG00000112055 ENSMUST00000219684 Gm48773 lincRNA Interval_57439 chr15 10920847 10922010 + 0 NA Intergenic Intergenic 3991 ENSMUSG00000115042.1 ENSMUSG00000115042 ENSMUST00000228657 Gm29742 processed_pseudogene Interval_97114 chr2 131392313 131393212 + 0 NA Intergenic Intergenic 21200 ENSMUSG00000089113.1 ENSMUSG00000089113 ENSMUST00000158488 Gm22902 ribozyme Interval_12353 chr1 192403142 192403962 + 0 NA intron (ENSMUSG00000058248.12, intron 7 of 10) protein_coding-intron (ENSMUSG00000058248.12, intron 7 of 10) -31188 ENSMUSG00000058248.12 ENSMUSG00000058248 ENSMUST00000151152 Kcnh1 protein_coding Interval_72220 chr17 28648599 28649173 + 0 NA TTS (ENSMUSG00000036196.16) protein_coding-TTS (ENSMUSG00000036196.16) -26403 ENSMUSG00000004865.16 ENSMUSG00000004865 ENSMUST00000114767 Srpk1 protein_coding Interval_149248 chr7 96660906 96662197 + 0 NA intron (ENSMUSG00000048078.16, intron 1 of 4) protein_coding-intron (ENSMUSG00000048078.16, intron 7 of 32) -32482 ENSMUSG00000085792.2 ENSMUSG00000085792 ENSMUST00000155217 Gm15414 antisense Interval_110215 chr3 154381399 154383952 + 0 NA Intergenic Intergenic 50678 ENSMUSG00000093738.2 ENSMUSG00000093738 ENSMUST00000181234 AI606473 processed_transcript Interval_39965 chr12 100137393 100138558 + 0 NA intron (ENSMUSG00000021179.8, intron 7 of 13) protein_coding-intron (ENSMUSG00000021179.8, intron 7 of 13) -8203 ENSMUSG00000021179.8 ENSMUSG00000021179 ENSMUST00000221954 Nrde2 protein_coding Interval_143224 chr7 4611676 4612477 + 0 NA TTS (ENSMUSG00000108582.1) processed_pseudogene-TTS (ENSMUSG00000108582.1) 441 ENSMUSG00000108392.1 ENSMUSG00000108392 ENSMUST00000206707 Gm9463 processed_pseudogene Interval_128848 chr5 115570415 115571463 + 0 NA intron (ENSMUSG00000041638.18, intron 1 of 14) protein_coding-intron (ENSMUSG00000041638.18, intron 1 of 57) 5636 ENSMUSG00000041638.18 ENSMUSG00000041638 ENSMUST00000137523 Gcn1 protein_coding Interval_49015 chr13 106925147 106926593 + 0 NA promoter-TSS (ENSMUSG00000042590.17) protein_coding-promoter-TSS (ENSMUSG00000042590.17) 19659 ENSMUSG00000114572.1 ENSMUSG00000114572 ENSMUST00000225875 Gm48457 processed_pseudogene Interval_166888 chr9 63696784 63697130 + 0 NA intron (ENSMUSG00000032402.12, intron 1 of 8) protein_coding-intron (ENSMUSG00000032402.12, intron 1 of 8) 15012 ENSMUSG00000032402.12 ENSMUSG00000032402 ENSMUST00000137065 Smad3 protein_coding Interval_134190 chr6 22485912 22486801 + 0 NA Intergenic Intergenic -136562 ENSMUSG00000107282.1 ENSMUSG00000107282 ENSMUST00000201550 Gm43630 processed_pseudogene Interval_5748 chr1 91423526 91423927 + 0 NA exon (ENSMUSG00000055866.9, exon 19 of 23) protein_coding-exon (ENSMUSG00000055866.9, exon 19 of 23) -10518 ENSMUSG00000067071.8 ENSMUSG00000067071 ENSMUST00000150520 Hes6 protein_coding Interval_90363 chr2 29998258 30000017 + 0 NA exon (ENSMUSG00000057738.14, exon 21 of 55) protein_coding-exon (ENSMUSG00000057738.14, exon 21 of 55) 3187 ENSMUSG00000098453.1 ENSMUSG00000098453 ENSMUST00000184313 Mir6997 miRNA Interval_9437 chr1 157086087 157086923 + 0 NA Intergenic Intergenic 22144 ENSMUSG00000026592.13 ENSMUSG00000026592 ENSMUST00000148649 Tex35 protein_coding Interval_42570 chr13 15556538 15556837 + 0 NA intron (ENSMUSG00000021318.15, intron 3 of 9) protein_coding-intron (ENSMUSG00000021318.15, intron 3 of 14) -92951 ENSMUSG00000097806.3 ENSMUSG00000097806 ENSMUST00000193256 Gm6556 processed_transcript Interval_46455 chr13 66304875 66305564 + 0 NA exon (ENSMUSG00000114616.1, exon 3 of 3) lincRNA-exon (ENSMUSG00000114616.1, exon 3 of 3) 4077 ENSMUSG00000114776.1 ENSMUSG00000114776 ENSMUST00000224087 Gm18260 processed_pseudogene Interval_153496 chr7 145211703 145212792 + 0 NA intron (ENSMUSG00000048677.9, intron 19 of 20) protein_coding-intron (ENSMUSG00000048677.9, intron 19 of 20) -4167 ENSMUSG00000109305.1 ENSMUSG00000109305 ENSMUST00000207841 Smim38 protein_coding Interval_87455 chr19 51778088 51778278 + 0 NA Intergenic Intergenic -14043 ENSMUSG00000097719.1 ENSMUSG00000097719 ENSMUST00000180885 Rpl31-ps18 processed_pseudogene Interval_57576 chr15 12498531 12498768 + 0 NA intron (ENSMUSG00000022197.16, intron 3 of 4) protein_coding-intron (ENSMUSG00000022197.16, intron 1 of 23) 73881 ENSMUSG00000095516.1 ENSMUSG00000095516 ENSMUST00000179085 Gm24135 miRNA Interval_35483 chr12 22976349 22977207 + 0 NA intron (ENSMUSG00000073164.11, intron 3 of 4) lincRNA-intron (ENSMUSG00000073164.11, intron 2 of 3) -16472 ENSMUSG00000113670.1 ENSMUSG00000113670 ENSMUST00000222206 Gm49686 transcribed_unprocessed_pseudogene Interval_104487 chr3 66590699 66591022 + 0 NA Intergenic Intergenic -27309 ENSMUSG00000103600.1 ENSMUSG00000103600 ENSMUST00000193914 Gm17952 processed_pseudogene Interval_126262 chr5 85173304 85174906 + 0 NA Intergenic Intergenic -307260 ENSMUSG00000106389.1 ENSMUSG00000106389 ENSMUST00000196930 Gm21006 processed_pseudogene Interval_121018 chr4 152241249 152241500 + 0 NA intron (ENSMUSG00000028937.14, intron 6 of 8) protein_coding-intron (ENSMUSG00000028937.14, intron 6 of 8) 37448 ENSMUSG00000085724.1 ENSMUSG00000085724 ENSMUST00000127752 Gm13096 sense_intronic Interval_75574 chr17 68310433 68310709 + 0 NA intron (ENSMUSG00000041565.17, intron 1 of 6) protein_coding-intron (ENSMUSG00000041565.17, intron 1 of 19) 61239 ENSMUSG00000090224.1 ENSMUSG00000090224 ENSMUST00000159103 Gm15974 processed_pseudogene Interval_45571 chr13 55952753 55953298 + 0 NA intron (ENSMUSG00000114493.2, intron 3 of 5) antisense-intron (ENSMUSG00000114493.2, intron 3 of 5) 77209 ENSMUSG00000114229.1 ENSMUSG00000114229 ENSMUST00000225745 Gm47072 processed_pseudogene Interval_54876 chr14 75939804 75940020 + 0 NA intron (ENSMUSG00000067995.4, intron 5 of 7) protein_coding-intron (ENSMUSG00000067995.4, intron 5 of 7) -15097 ENSMUSG00000046523.5 ENSMUSG00000046523 ENSMUST00000050120 Kctd4 protein_coding Interval_78533 chr18 14553757 14553939 + 0 NA Intergenic Intergenic -16299 ENSMUSG00000053740.8 ENSMUSG00000053740 ENSMUST00000066378 Gm6457 processed_pseudogene Interval_155129 chr8 26868504 26868836 + 0 NA intron (ENSMUSG00000100335.2, intron 2 of 2) lincRNA-intron (ENSMUSG00000100335.2, intron 1 of 2) 14025 ENSMUSG00000100335.2 ENSMUSG00000100335 ENSMUST00000210263 2310008N11Rik lincRNA Interval_148218 chr7 79947740 79948059 + 0 NA Intergenic Intergenic -1288 ENSMUSG00000077059.1 ENSMUSG00000077059 ENSMUST00000103871 Gm24541 miRNA Interval_20702 chr10 120383629 120384054 + 0 NA TTS (ENSMUSG00000034764.15) antisense-TTS (ENSMUSG00000034764.15) -5682 ENSMUSG00000090191.1 ENSMUSG00000090191 ENSMUST00000161291 9230105E05Rik antisense Interval_104863 chr3 76195710 76195938 + 0 NA intron (ENSMUSG00000034098.14, intron 2 of 15) protein_coding-intron (ENSMUSG00000034098.14, intron 2 of 15) -154101 ENSMUSG00000104223.1 ENSMUSG00000104223 ENSMUST00000194986 Gm18428 processed_pseudogene Interval_46583 chr13 67378039 67378670 + 0 NA Intergenic Intergenic -2621 ENSMUSG00000098692.1 ENSMUSG00000098692 ENSMUST00000166080 Gm28041 protein_coding Interval_132031 chr5 142393492 142395659 + 0 NA Intergenic Intergenic -6922 ENSMUSG00000056493.9 ENSMUSG00000056493 ENSMUST00000072837 Foxk1 protein_coding Interval_14744 chr10 39543650 39544352 + 0 NA intron (ENSMUSG00000019843.14, intron 11 of 12) protein_coding-intron (ENSMUSG00000019843.14, intron 12 of 13) 14061 ENSMUSG00000087014.1 ENSMUSG00000087014 ENSMUST00000153722 Gm16364 antisense Interval_94493 chr2 91649418 91650593 + 0 NA promoter-TSS (ENSMUSG00000027247.16) protein_coding-promoter-TSS (ENSMUSG00000027247.16) -1493 ENSMUSG00000027247.16 ENSMUSG00000027247 ENSMUST00000149426 Arhgap1 protein_coding Interval_15701 chr10 53750365 53751905 + 0 NA promoter-TSS (ENSMUSG00000019856.14) protein_coding-promoter-TSS (ENSMUSG00000019856.14) 52394 ENSMUSG00000112809.1 ENSMUSG00000112809 ENSMUST00000217870 Gm47915 lincRNA Interval_26592 chr11 59090338 59090609 + 0 NA intron (ENSMUSG00000061462.18, intron 16 of 81) protein_coding-intron (ENSMUSG00000061462.18, intron 19 of 89) 45902 ENSMUSG00000061462.18 ENSMUSG00000061462 ENSMUST00000133040 Obscn protein_coding Interval_115907 chr4 106176383 106177744 + 0 NA Intergenic Intergenic -39285 ENSMUSG00000081189.1 ENSMUSG00000081189 ENSMUST00000121815 Hspd1-ps4 processed_pseudogene Interval_43119 chr13 24318379 24318904 + 0 NA Intergenic Intergenic -1661 ENSMUSG00000081909.1 ENSMUSG00000081909 ENSMUST00000122316 Gm11341 processed_pseudogene Interval_77868 chr18 4860047 4861318 + 0 NA Intergenic Intergenic 48196 ENSMUSG00000097043.1 ENSMUSG00000097043 ENSMUST00000180904 Gm10556 lincRNA Interval_62175 chr15 88567739 88567956 + 0 NA Intergenic Intergenic -32455 ENSMUSG00000054117.8 ENSMUSG00000054117 ENSMUST00000066949 Zdhhc25 protein_coding Interval_36802 chr12 54174791 54175484 + 0 NA Intergenic Intergenic 28723 ENSMUSG00000035105.5 ENSMUSG00000035105 ENSMUST00000039516 Egln3 protein_coding Interval_30402 chr11 94148847 94151463 + 0 NA intron (ENSMUSG00000086003.7, intron 3 of 5) processed_transcript-intron (ENSMUSG00000086003.7, intron 3 of 5) 16653 ENSMUSG00000086003.7 ENSMUSG00000086003 ENSMUST00000125406 B230206L02Rik processed_transcript Interval_147124 chr7 63555385 63556490 + 0 NA intron (ENSMUSG00000033510.14, intron 1 of 2) protein_coding-intron (ENSMUSG00000033510.14, intron 1 of 13) 13458 ENSMUSG00000081788.2 ENSMUSG00000081788 ENSMUST00000121016 Gm5898 processed_pseudogene Interval_82740 chr18 76326323 76326761 + 0 NA Intergenic Intergenic 4718 ENSMUSG00000117816.1 ENSMUSG00000117816 ENSMUST00000235901 Gm50360 processed_pseudogene Interval_45450 chr13 55230146 55231087 + 0 NA intron (ENSMUSG00000021488.8, intron 2 of 20) protein_coding-intron (ENSMUSG00000021488.8, intron 2 of 22) 18546 ENSMUSG00000021488.8 ENSMUSG00000021488 ENSMUST00000225405 Nsd1 protein_coding Interval_32830 chr11 111306291 111306570 + 0 NA Intergenic Intergenic 30330 ENSMUSG00000082272.1 ENSMUSG00000082272 ENSMUST00000121873 Gm11675 processed_pseudogene Interval_11011 chr1 178358095 178358762 + 0 NA Intergenic Intergenic 5093 ENSMUSG00000099303.1 ENSMUSG00000099303 ENSMUST00000185108 Gm27458 miRNA Interval_97397 chr2 135752301 135752559 + 0 NA intron (ENSMUSG00000039943.16, intron 2 of 2) protein_coding-intron (ENSMUSG00000039943.16, intron 1 of 36) 10600 ENSMUSG00000039943.16 ENSMUSG00000039943 ENSMUST00000147122 Plcb4 protein_coding Interval_95139 chr2 104199893 104201663 + 0 NA intron (ENSMUSG00000068373.15, intron 15 of 20) protein_coding-intron (ENSMUSG00000068373.15, intron 15 of 20) 27460 ENSMUSG00000089606.1 ENSMUSG00000089606 ENSMUST00000158981 Gm22501 snoRNA Interval_28936 chr11 79371934 79372167 + 0 NA exon (ENSMUSG00000082304.1, exon 1 of 1) processed_pseudogene-exon (ENSMUSG00000082304.1, exon 1 of 1) 180 ENSMUSG00000082304.1 ENSMUSG00000082304 ENSMUST00000119771 Gm11198 processed_pseudogene Interval_5973 chr1 93648566 93650010 + 0 NA intron (ENSMUSG00000026277.14, intron 2 of 4) protein_coding-intron (ENSMUSG00000026277.14, intron 2 of 4) 9371 ENSMUSG00000026277.14 ENSMUSG00000026277 ENSMUST00000186287 Stk25 protein_coding Interval_118973 chr4 134793116 134793720 + 0 NA Intergenic Intergenic 17795 ENSMUSG00000028826.14 ENSMUSG00000028826 ENSMUST00000136113 Maco1 protein_coding Interval_63351 chr15 100494482 100495753 + 0 NA exon (ENSMUSG00000044636.6, exon 1 of 5) protein_coding-exon (ENSMUSG00000044636.6, exon 1 of 5) 371 ENSMUSG00000044636.6 ENSMUSG00000044636 ENSMUST00000061457 Csrnp2 protein_coding Interval_21299 chr10 127727650 127728383 + 0 NA exon (ENSMUSG00000025400.11, exon 1 of 3) protein_coding-exon (ENSMUSG00000025400.11, exon 1 of 3) 169 ENSMUSG00000025400.11 ENSMUSG00000025400 ENSMUST00000218048 Tac2 protein_coding Interval_135954 chr6 49073471 49074804 + 0 NA promoter-TSS (ENSMUSG00000029815.12) protein_coding-promoter-TSS (ENSMUSG00000029815.12) 63 ENSMUSG00000029815.12 ENSMUSG00000029815 ENSMUST00000139726 Malsu1 protein_coding Interval_19847 chr10 110336495 110336734 + 0 NA intron (ENSMUSG00000020181.18, intron 1 of 40) protein_coding-intron (ENSMUSG00000020181.18, intron 1 of 4) -42894 ENSMUSG00000112548.1 ENSMUSG00000112548 ENSMUST00000219876 Gm47338 TEC Interval_20067 chr10 113052903 113053126 + 0 NA Intergenic Intergenic 27513 ENSMUSG00000111979.1 ENSMUSG00000111979 ENSMUST00000219265 Gm47522 TEC Interval_12547 chr1 195113752 195113972 + 0 NA TTS (ENSMUSG00000016481.15) protein_coding-TTS (ENSMUSG00000016481.15) 15600 ENSMUSG00000016481.15 ENSMUSG00000016481 ENSMUST00000192405 Cr1l protein_coding Interval_156874 chr8 61386700 61386957 + 0 NA TTS (ENSMUSG00000031642.9) protein_coding-TTS (ENSMUSG00000031642.9) -5441 ENSMUSG00000109610.1 ENSMUSG00000109610 ENSMUST00000210343 Gm7432 processed_pseudogene Interval_81801 chr18 64886019 64889019 + 0 NA promoter-TSS (ENSMUSG00000024589.18) protein_coding-promoter-TSS (ENSMUSG00000024589.18) 972 ENSMUSG00000114210.2 ENSMUSG00000114210 ENSMUST00000224731 A330084C13Rik antisense Interval_135173 chr6 37212602 37213112 + 0 NA intron (ENSMUSG00000038665.15, intron 1 of 32) protein_coding-intron (ENSMUSG00000038665.15, intron 2 of 32) 87327 ENSMUSG00000038665.15 ENSMUSG00000038665 ENSMUST00000136457 Dgki protein_coding Interval_100564 chr2 170147735 170148210 + 0 NA exon (ENSMUSG00000052056.14, exon 1 of 3) protein_coding-exon (ENSMUSG00000052056.14, exon 1 of 3) 131 ENSMUSG00000052056.14 ENSMUSG00000052056 ENSMUST00000149318 Zfp217 protein_coding Interval_48791 chr13 103320123 103320373 + 0 NA intron (ENSMUSG00000034751.17, intron 1 of 3) protein_coding-intron (ENSMUSG00000034751.17, intron 1 of 4) -36004 ENSMUSG00000047643.5 ENSMUSG00000047643 ENSMUST00000052030 Gm5454 processed_pseudogene Interval_168496 chr9 82547934 82549045 + 0 NA Intergenic Intergenic 23498 ENSMUSG00000098420.1 ENSMUSG00000098420 ENSMUST00000185049 Gm27249 processed_pseudogene Interval_61156 chr15 79529138 79530442 + 0 NA exon (ENSMUSG00000055065.7, exon 13 of 13) protein_coding-exon (ENSMUSG00000055065.7, exon 13 of 13) 13379 ENSMUSG00000010830.8 ENSMUSG00000010830 ENSMUST00000010974 Kdelr3 protein_coding Interval_13906 chr10 24534629 24536183 + 0 NA Intergenic Intergenic 14934 ENSMUSG00000087400.8 ENSMUSG00000087400 ENSMUST00000125158 Gm15270 processed_transcript Interval_106135 chr3 93546956 93548056 + 0 NA Intergenic Intergenic -13221 ENSMUSG00000041959.14 ENSMUSG00000041959 ENSMUST00000170612 S100a10 protein_coding Interval_15360 chr10 45081032 45081267 + 0 NA intron (ENSMUSG00000019849.11, intron 2 of 14) protein_coding-intron (ENSMUSG00000019849.11, intron 2 of 14) 13946 ENSMUSG00000019849.11 ENSMUSG00000019849 ENSMUST00000099858 Prep protein_coding Interval_87119 chr19 46275193 46276205 + 0 NA intron (ENSMUSG00000025224.16, intron 26 of 36) protein_coding-intron (ENSMUSG00000025224.16, intron 29 of 39) -8030 ENSMUSG00000086816.1 ENSMUSG00000086816 ENSMUST00000130184 Gm16726 antisense Interval_72853 chr17 32685531 32685917 + 0 NA promoter-TSS (ENSMUSG00000073424.9) protein_coding-promoter-TSS (ENSMUSG00000073424.9) 97 ENSMUSG00000073424.9 ENSMUSG00000073424 ENSMUST00000008801 Cyp4f15 protein_coding Interval_114322 chr4 72712577 72714039 + 0 NA Intergenic Intergenic 139324 ENSMUSG00000059343.4 ENSMUSG00000059343 ENSMUST00000078617 Aldoart1 protein_coding Interval_20464 chr10 117765744 117766273 + 0 NA exon (ENSMUSG00000052798.13, exon 19 of 28) protein_coding-exon (ENSMUSG00000052798.13, exon 19 of 28) -21066 ENSMUSG00000060181.6 ENSMUSG00000060181 ENSMUST00000219482 Slc35e3 protein_coding Interval_99713 chr2 164442627 164443799 + 0 NA promoter-TSS (ENSMUSG00000017009.3) protein_coding-promoter-TSS (ENSMUSG00000017009.3) 674 ENSMUSG00000017009.3 ENSMUSG00000017009 ENSMUST00000142909 Sdc4 protein_coding Interval_48409 chr13 98852944 98853316 + 0 NA intron (ENSMUSG00000009470.17, intron 12 of 15) protein_coding-intron (ENSMUSG00000009470.17, intron 18 of 23) 17193 ENSMUSG00000009470.17 ENSMUSG00000009470 ENSMUST00000179271 Tnpo1 protein_coding Interval_160534 chr8 110484728 110485032 + 0 NA intron (ENSMUSG00000059854.8, intron 24 of 25) protein_coding-intron (ENSMUSG00000059854.8, intron 24 of 86) -13972 ENSMUSG00000093112.2 ENSMUSG00000093112 ENSMUST00000175371 Gm22701 misc_RNA Interval_149518 chr7 99300459 99300894 + 0 NA intron (ENSMUSG00000055407.14, intron 1 of 3) protein_coding-intron (ENSMUSG00000055407.14, intron 1 of 3) -20524 ENSMUSG00000109460.1 ENSMUSG00000109460 ENSMUST00000129058 Gm45591 sense_intronic Interval_31992 chr11 104334493 104335256 + 0 NA TTS (ENSMUSG00000018412.16) protein_coding-TTS (ENSMUSG00000018412.16) -75513 ENSMUSG00000085134.1 ENSMUSG00000085134 ENSMUST00000137561 Gm11659 antisense Interval_170307 chr9 106828055 106828292 + 0 NA promoter-TSS (ENSMUSG00000040325.16) protein_coding-promoter-TSS (ENSMUSG00000040325.16) -15575 ENSMUSG00000088812.1 ENSMUSG00000088812 ENSMUST00000158187 Gm22384 snRNA Interval_124430 chr5 46401249 46401535 + 0 NA Intergenic Intergenic -12952 ENSMUSG00000067321.5 ENSMUSG00000067321 ENSMUST00000121537 Gm7931 processed_pseudogene Interval_13112 chr10 11495923 11496138 + 0 NA Intergenic Intergenic -9266 ENSMUSG00000111949.1 ENSMUSG00000111949 ENSMUST00000219639 Gm48679 processed_pseudogene Interval_157464 chr8 70527235 70528477 + 0 NA promoter-TSS (ENSMUSG00000055553.16) protein_coding-promoter-TSS (ENSMUSG00000055553.16) 94 ENSMUSG00000019428.16 ENSMUSG00000019428 ENSMUST00000134893 Fkbp8 protein_coding Interval_160420 chr8 109353067 109353594 + 0 NA Intergenic Intergenic -12466 ENSMUSG00000110528.1 ENSMUSG00000110528 ENSMUST00000211890 Gm1943 processed_pseudogene Interval_104835 chr3 75661058 75661248 + 0 NA Intergenic Intergenic -12496 ENSMUSG00000099370.1 ENSMUSG00000099370 ENSMUST00000191479 Platr10 lincRNA Interval_108254 chr3 123039792 123040092 + 0 NA Intergenic Intergenic 3793 ENSMUSG00000106114.1 ENSMUSG00000106114 ENSMUST00000197420 Gm43286 processed_pseudogene Interval_141923 chr6 135398790 135399565 + 0 NA Intergenic Intergenic 36632 ENSMUSG00000030208.15 ENSMUSG00000030208 ENSMUST00000111907 Emp1 protein_coding Interval_23226 chr11 20671971 20673116 + 0 NA Intergenic Intergenic -56877 ENSMUSG00000084252.1 ENSMUSG00000084252 ENSMUST00000120008 Gm12036 processed_pseudogene Interval_60820 chr15 76952483 76952734 + 0 NA Intergenic Intergenic 4079 ENSMUSG00000063236.6 ENSMUSG00000063236 ENSMUST00000229229 1110038F14Rik protein_coding Interval_123195 chr5 30525748 30526678 + 0 NA intron (ENSMUSG00000053194.2, intron 3 of 6) protein_coding-intron (ENSMUSG00000053194.2, intron 3 of 6) -3287 ENSMUSG00000106300.1 ENSMUSG00000106300 ENSMUST00000200017 Gm42765 antisense Interval_149928 chr7 102733434 102733639 + 0 NA Intergenic Intergenic 1178 ENSMUSG00000088888.1 ENSMUSG00000088888 ENSMUST00000158263 Gm24210 snoRNA Interval_119438 chr4 137635940 137636737 + 0 NA intron (ENSMUSG00000043411.15, intron 6 of 10) protein_coding-intron (ENSMUSG00000043411.15, intron 6 of 10) -13963 ENSMUSG00000043411.15 ENSMUSG00000043411 ENSMUST00000125151 Usp48 protein_coding Interval_103486 chr3 44191612 44192765 + 0 NA Intergenic Intergenic 236467 ENSMUSG00000103148.1 ENSMUSG00000103148 ENSMUST00000193249 Gm37746 TEC Interval_173551 chrX 99216615 99217629 + 0 NA Intergenic Intergenic 78991 ENSMUSG00000031217.8 ENSMUSG00000031217 ENSMUST00000151750 Efnb1 protein_coding Interval_28650 chr11 77559319 77559784 + 0 NA intron (ENSMUSG00000017291.13, intron 12 of 19) protein_coding-intron (ENSMUSG00000017291.13, intron 11 of 18) 17418 ENSMUSG00000081451.1 ENSMUSG00000081451 ENSMUST00000120228 Gm12734 processed_pseudogene Interval_118146 chr4 129220989 129223888 + 0 NA exon (ENSMUSG00000050390.12, exon 6 of 7) protein_coding-exon (ENSMUSG00000050390.12, exon 6 of 7) 5042 ENSMUSG00000050390.12 ENSMUSG00000050390 ENSMUST00000146376 C77080 protein_coding Interval_1954 chr1 34883242 34884680 + 0 NA Intergenic Intergenic 6305 ENSMUSG00000026123.11 ENSMUSG00000026123 ENSMUST00000191722 Plekhb2 protein_coding Interval_84688 chr19 15199200 15199465 + 0 NA Intergenic Intergenic -238566 ENSMUSG00000063586.1 ENSMUSG00000063586 ENSMUST00000072982 Gm5513 processed_pseudogene Interval_139116 chr6 95446274 95446942 + 0 NA Intergenic Intergenic -112631 ENSMUSG00000068180.13 ENSMUSG00000068180 ENSMUST00000171594 AY512915 lincRNA Interval_104346 chr3 63841608 63843243 + 0 NA promoter-TSS (ENSMUSG00000085290.1) processed_pseudogene-promoter-TSS (ENSMUSG00000085290.1) -691 ENSMUSG00000085290.1 ENSMUSG00000085290 ENSMUST00000152628 Gm16129 processed_pseudogene Interval_18682 chr10 89275561 89275847 + 0 NA intron (ENSMUSG00000035189.17, intron 3 of 6) protein_coding-intron (ENSMUSG00000035189.17, intron 3 of 10) -18114 ENSMUSG00000035189.17 ENSMUSG00000035189 ENSMUST00000180843 Ano4 protein_coding Interval_84199 chr19 8712849 8714198 + 0 NA promoter-TSS (ENSMUSG00000010095.13) protein_coding-promoter-TSS (ENSMUSG00000010095.13) 9675 ENSMUSG00000010095.13 ENSMUSG00000010095 ENSMUST00000205538 Slc3a2 protein_coding Interval_70127 chr17 5535320 5536026 + 0 NA intron (ENSMUSG00000034265.8, intron 1 of 8) protein_coding-intron (ENSMUSG00000034265.8, intron 1 of 8) 43116 ENSMUSG00000034265.8 ENSMUSG00000034265 ENSMUST00000089185 Zdhhc14 protein_coding Interval_46349 chr13 64131608 64132308 + 0 NA Intergenic Intergenic -2622 ENSMUSG00000033114.11 ENSMUSG00000033114 ENSMUST00000222168 Slc35d2 protein_coding Interval_23505 chr11 23013450 23014139 + 0 NA intron (ENSMUSG00000049811.17, intron 1 of 3) protein_coding-intron (ENSMUSG00000049811.17, intron 1 of 3) 407 ENSMUSG00000049811.17 ENSMUSG00000049811 ENSMUST00000151877 Fam161a protein_coding Interval_37479 chr12 69235340 69235567 + 0 NA intron (ENSMUSG00000113190.1, intron 1 of 1) antisense-intron (ENSMUSG00000113190.1, intron 1 of 1) -6465 ENSMUSG00000051890.13 ENSMUSG00000051890 ENSMUST00000173419 Klhdc1 protein_coding Interval_57575 chr15 12490430 12490984 + 0 NA intron (ENSMUSG00000022197.16, intron 3 of 4) protein_coding-intron (ENSMUSG00000022197.16, intron 1 of 23) -78327 ENSMUSG00000022197.16 ENSMUSG00000022197 ENSMUST00000189746 Pdzd2 protein_coding Interval_130219 chr5 125027145 125027681 + 0 NA promoter-TSS (ENSMUSG00000029478.16) protein_coding-promoter-TSS (ENSMUSG00000029478.16) -2352 ENSMUSG00000029478.16 ENSMUSG00000029478 ENSMUST00000199561 Ncor2 protein_coding Interval_173014 chrX 63016779 63017094 + 0 NA Intergenic Intergenic 18170 ENSMUSG00000082965.1 ENSMUSG00000082965 ENSMUST00000117124 Gm6754 processed_pseudogene Interval_67136 chr16 43816349 43817087 + 0 NA intron (ENSMUSG00000022705.5, intron 4 of 7) protein_coding-intron (ENSMUSG00000022705.5, intron 3 of 6) 17093 ENSMUSG00000077251.1 ENSMUSG00000077251 ENSMUST00000104063 Gm26074 snoRNA Interval_35754 chr12 28889205 28889720 + 0 NA Intergenic Intergenic -3080 ENSMUSG00000113325.1 ENSMUSG00000113325 ENSMUST00000220624 Gm48080 processed_pseudogene Interval_82600 chr18 75378473 75381125 + 0 NA intron (ENSMUSG00000025880.11, intron 3 of 3) protein_coding-intron (ENSMUSG00000025880.11, intron 3 of 3) 10809 ENSMUSG00000025880.11 ENSMUSG00000025880 ENSMUST00000172718 Smad7 protein_coding Interval_42260 chr13 11210127 11210584 + 0 NA Intergenic Intergenic 216543 ENSMUSG00000077618.1 ENSMUSG00000077618 ENSMUST00000104430 Gm25496 snoRNA Interval_101894 chr3 10465795 10466088 + 0 NA Intergenic Intergenic -25841 ENSMUSG00000027534.16 ENSMUSG00000027534 ENSMUST00000195822 Snx16 protein_coding Interval_137367 chr6 71735074 71736519 + 0 NA intron (ENSMUSG00000052852.8, intron 1 of 8) protein_coding-intron (ENSMUSG00000052852.8, intron 1 of 6) 27926 ENSMUSG00000052852.8 ENSMUSG00000052852 ENSMUST00000212631 Reep1 protein_coding Interval_63873 chr16 4153393 4154015 + 0 NA intron (ENSMUSG00000022521.10, intron 3 of 29) protein_coding-intron (ENSMUSG00000022521.10, intron 3 of 30) 19932 ENSMUSG00000103937.1 ENSMUSG00000103937 ENSMUST00000195629 Gm37186 TEC Interval_8839 chr1 151465246 151465454 + 0 NA intron (ENSMUSG00000026484.13, intron 3 of 3) protein_coding-intron (ENSMUSG00000026484.13, intron 3 of 3) 10812 ENSMUSG00000026484.13 ENSMUSG00000026484 ENSMUST00000187991 Rnf2 protein_coding Interval_85141 chr19 23132848 23136881 + 0 NA promoter-TSS (ENSMUSG00000044387.5) lincRNA-promoter-TSS (ENSMUSG00000044387.5) -36 ENSMUSG00000044387.5 ENSMUSG00000044387 ENSMUST00000142712 2410080I02Rik lincRNA Interval_119922 chr4 140951967 140952897 + 0 NA exon (ENSMUSG00000028927.6, exon 16 of 16) protein_coding-exon (ENSMUSG00000028927.6, exon 16 of 16) 5470 ENSMUSG00000087698.1 ENSMUSG00000087698 ENSMUST00000140501 Gm13031 antisense Interval_135276 chr6 37983300 37983672 + 0 NA TTS (ENSMUSG00000029830.15) protein_coding-TTS (ENSMUSG00000029830.15) 35125 ENSMUSG00000029830.15 ENSMUSG00000029830 ENSMUST00000040486 Svopl protein_coding Interval_117008 chr4 118988464 118989780 + 0 NA intron (ENSMUSG00000087238.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000087238.1, intron 1 of 1) 2108 ENSMUSG00000082143.1 ENSMUSG00000082143 ENSMUST00000122207 Gm12864 processed_pseudogene Interval_137362 chr6 71698707 71699170 + 0 NA Intergenic Intergenic -8932 ENSMUSG00000052852.8 ENSMUSG00000052852 ENSMUST00000212631 Reep1 protein_coding Interval_104656 chr3 69171106 69171641 + 0 NA Intergenic Intergenic 40140 ENSMUSG00000094763.3 ENSMUSG00000094763 ENSMUST00000195406 Gm1647 lincRNA Interval_101075 chr2 174943231 174943694 + 0 NA Intergenic Intergenic -66857 ENSMUSG00000078906.9 ENSMUSG00000078906 ENSMUST00000109070 Gm14444 protein_coding Interval_57370 chr15 10116131 10116403 + 0 NA Intergenic Intergenic 64441 ENSMUSG00000088156.1 ENSMUSG00000088156 ENSMUST00000157531 Gm26350 misc_RNA Interval_169925 chr9 102999706 103001900 + 0 NA intron (ENSMUSG00000032548.14, intron 1 of 3) protein_coding-intron (ENSMUSG00000032548.14, intron 1 of 3) -7351 ENSMUSG00000032548.14 ENSMUSG00000032548 ENSMUST00000188664 Slco2a1 protein_coding Interval_21099 chr10 126340332 126341030 + 0 NA Intergenic Intergenic -31294 ENSMUSG00000112482.1 ENSMUSG00000112482 ENSMUST00000218075 1700025K04Rik lincRNA Interval_17314 chr10 75797628 75798775 + 0 NA promoter-TSS (ENSMUSG00000001663.10) protein_coding-promoter-TSS (ENSMUSG00000001663.10) -470 ENSMUSG00000001663.10 ENSMUSG00000001663 ENSMUST00000139724 Gstt1 protein_coding Interval_100074 chr2 166945497 166945767 + 0 NA TTS (ENSMUSG00000002718.14) protein_coding-TTS (ENSMUSG00000002718.14) 2093 ENSMUSG00000090397.1 ENSMUSG00000090397 ENSMUST00000172037 Gm17096 antisense Interval_74732 chr17 56203643 56204182 + 0 NA intron (ENSMUSG00000001229.9, intron 7 of 10) protein_coding-intron (ENSMUSG00000001229.9, intron 8 of 20) 14993 ENSMUSG00000001229.9 ENSMUSG00000001229 ENSMUST00000233586 Dpp9 protein_coding Interval_75706 chr17 70779182 70781995 + 0 NA intron (ENSMUSG00000117231.1, intron 3 of 4) protein_coding-intron (ENSMUSG00000003279.17, intron 11 of 14) -25006 ENSMUSG00000097282.1 ENSMUSG00000097282 ENSMUST00000181546 5031415H12Rik antisense Interval_18535 chr10 87057954 87058895 + 0 NA intron (ENSMUSG00000047129.11, intron 1 of 4) protein_coding-intron (ENSMUSG00000047129.11, intron 1 of 5) 58127 ENSMUSG00000089666.1 ENSMUSG00000089666 ENSMUST00000160532 Gm16269 processed_pseudogene Interval_73168 chr17 35232127 35232424 + 0 NA intron (ENSMUSG00000042419.8, intron 2 of 3) protein_coding-intron (ENSMUSG00000042419.8, intron 2 of 3) -1385 ENSMUSG00000024403.16 ENSMUSG00000024403 ENSMUST00000142415 Atp6v1g2 protein_coding Interval_3166 chr1 54373944 54374432 + 0 NA Intergenic Intergenic 44196 ENSMUSG00000025983.11 ENSMUSG00000025983 ENSMUST00000159682 Ccdc150 protein_coding Interval_73961 chr17 45693938 45697242 + 0 NA intron (ENSMUSG00000023939.7, intron 1 of 1) protein_coding-intron (ENSMUSG00000023939.7, intron 2 of 2) -8685 ENSMUSG00000036026.15 ENSMUSG00000036026 ENSMUST00000131089 Tmem63b protein_coding Interval_135732 chr6 45833400 45833923 + 0 NA intron (ENSMUSG00000039419.17, intron 3 of 23) protein_coding-intron (ENSMUSG00000039419.17, intron 3 of 23) -68277 ENSMUSG00000107515.1 ENSMUSG00000107515 ENSMUST00000205039 Gm43886 TEC Interval_866 chr1 12795038 12796812 + 0 NA intron (ENSMUSG00000016918.15, intron 4 of 11) protein_coding-intron (ENSMUSG00000016918.15, intron 4 of 21) 76461 ENSMUSG00000016918.15 ENSMUSG00000016918 ENSMUST00000185780 Sulf1 protein_coding Interval_62553 chr15 94589231 94590201 + 0 NA intron (ENSMUSG00000022451.12, intron 1 of 8) protein_coding-intron (ENSMUSG00000022451.12, intron 1 of 8) -4241 ENSMUSG00000022451.12 ENSMUSG00000022451 ENSMUST00000152590 Twf1 protein_coding Interval_165702 chr9 51151846 51152696 + 0 NA intron (ENSMUSG00000110266.1, intron 13 of 30) protein_coding-intron (ENSMUSG00000110266.1, intron 13 of 30) 13246 ENSMUSG00000110266.1 ENSMUSG00000110266 ENSMUST00000210433 Gm32742 protein_coding Interval_117503 chr4 124217392 124217613 + 0 NA Intergenic Intergenic 61675 ENSMUSG00000103541.1 ENSMUSG00000103541 ENSMUST00000193103 Gm37667 TEC Interval_99453 chr2 161262996 161263215 + 0 NA Intergenic Intergenic -7648 ENSMUSG00000081099.2 ENSMUSG00000081099 ENSMUST00000121506 Gm5270 processed_pseudogene Interval_36303 chr12 40950642 40950836 + 0 NA Intergenic Intergenic 33451 ENSMUSG00000114166.1 ENSMUSG00000114166 ENSMUST00000221023 Gm18246 processed_pseudogene Interval_113246 chr4 52053619 52054020 + 0 NA Intergenic Intergenic -2709 ENSMUSG00000085515.1 ENSMUSG00000085515 ENSMUST00000141452 C630028M04Rik lincRNA Interval_31242 chr11 99091759 99091947 + 0 NA Intergenic Intergenic -16512 ENSMUSG00000017607.9 ENSMUSG00000017607 ENSMUST00000123303 Tns4 protein_coding Interval_46382 chr13 64360695 64361281 + 0 NA promoter-TSS (ENSMUSG00000113683.1) antisense-promoter-TSS (ENSMUSG00000113683.1) -64 ENSMUSG00000113683.1 ENSMUSG00000113683 ENSMUST00000221233 Gm47123 antisense Interval_69352 chr16 92402237 92403135 + 0 NA intron (ENSMUSG00000022951.16, intron 1 of 3) protein_coding-intron (ENSMUSG00000022951.16, intron 1 of 3) -2708 ENSMUSG00000022951.16 ENSMUSG00000022951 ENSMUST00000232457 Rcan1 protein_coding Interval_76366 chr17 79613613 79615898 + 0 NA promoter-TSS (ENSMUSG00000036368.8) protein_coding-promoter-TSS (ENSMUSG00000036368.8) -57645 ENSMUSG00000036368.8 ENSMUSG00000036368 ENSMUST00000224097 Rmdn2 protein_coding Interval_159062 chr8 89244972 89245837 + 0 NA Intergenic Intergenic -57844 ENSMUSG00000069962.3 ENSMUSG00000069962 ENSMUST00000093326 Gm5356 processed_pseudogene Interval_10797 chr1 175028324 175029315 + 0 NA Intergenic Intergenic 57361 ENSMUSG00000026527.13 ENSMUSG00000026527 ENSMUST00000193798 Rgs7 protein_coding Interval_141994 chr6 136429169 136430029 + 0 NA Intergenic Intergenic 11787 ENSMUSG00000088409.1 ENSMUSG00000088409 ENSMUST00000157784 Gm25882 snRNA Interval_34928 chr12 13602385 13602938 + 0 NA Intergenic Intergenic 24985 ENSMUSG00000113666.1 ENSMUSG00000113666 ENSMUST00000221862 Gm35725 lincRNA Interval_171850 chr9 121768064 121768626 + 0 NA TTS (ENSMUSG00000013419.7) protein_coding-TTS (ENSMUSG00000013419.7) 4328 ENSMUSG00000013419.7 ENSMUSG00000013419 ENSMUST00000213743 Zfp651 protein_coding Interval_18929 chr10 93201805 93202054 + 0 NA intron (ENSMUSG00000020015.10, intron 1 of 2) protein_coding-intron (ENSMUSG00000020015.10, intron 1 of 16) -37094 ENSMUSG00000020015.10 ENSMUSG00000020015 ENSMUST00000216729 Cdk17 protein_coding Interval_157210 chr8 67930913 67931471 + 0 NA intron (ENSMUSG00000030465.19, intron 5 of 16) protein_coding-intron (ENSMUSG00000030465.19, intron 3 of 14) -25577 ENSMUSG00000087266.2 ENSMUSG00000087266 ENSMUST00000127631 Gm15991 antisense Interval_80595 chr18 44506693 44507573 + 0 NA intron (ENSMUSG00000071856.10, intron 4 of 16) protein_coding-intron (ENSMUSG00000071856.10, intron 6 of 18) 126631 ENSMUSG00000024472.9 ENSMUSG00000024472 ENSMUST00000025350 Dcp2 protein_coding Interval_152812 chr7 138152828 138154309 + 0 NA Intergenic Intergenic -52029 ENSMUSG00000064575.1 ENSMUSG00000064575 ENSMUST00000082641 Gm25798 snRNA Interval_92214 chr2 56824984 56825284 + 0 NA Intergenic Intergenic 39323 ENSMUSG00000098437.1 ENSMUSG00000098437 ENSMUST00000184814 Mir195b miRNA Interval_121751 chr5 6623289 6623462 + 0 NA Intergenic Intergenic 23433 ENSMUSG00000105487.1 ENSMUSG00000105487 ENSMUST00000197482 Gm43324 processed_pseudogene Interval_117077 chr4 119390130 119390680 + 0 NA TTS (ENSMUSG00000028637.16) protein_coding-TTS (ENSMUSG00000028637.16) -3095 ENSMUSG00000118403.1 ENSMUSG00000118403 ENSMUST00000238574 Gm50484 antisense Interval_122600 chr5 24107252 24108204 + 0 NA intron (ENSMUSG00000028986.12, intron 1 of 11) protein_coding-intron (ENSMUSG00000028986.12, intron 1 of 10) 7122 ENSMUSG00000028986.12 ENSMUSG00000028986 ENSMUST00000199530 Klhl7 protein_coding Interval_107449 chr3 107776147 107777110 + 0 NA Intergenic Intergenic -5228 ENSMUSG00000106531.1 ENSMUSG00000106531 ENSMUST00000200491 Gm43233 processed_pseudogene Interval_34031 chr11 120119601 120119833 + 0 NA intron (ENSMUSG00000061306.16, intron 10 of 10) protein_coding-intron (ENSMUSG00000061306.16, intron 10 of 15) 20618 ENSMUSG00000078572.3 ENSMUSG00000078572 ENSMUST00000186913 Ndufaf8 protein_coding Interval_96947 chr2 129806609 129806959 + 0 NA intron (ENSMUSG00000037885.18, intron 2 of 2) protein_coding-intron (ENSMUSG00000037885.18, intron 2 of 3) 6267 ENSMUSG00000037885.18 ENSMUSG00000037885 ENSMUST00000166282 Stk35 protein_coding Interval_33679 chr11 117878543 117879254 + 0 NA intron (ENSMUSG00000085434.1, intron 3 of 3) antisense-intron (ENSMUSG00000085434.1, intron 3 of 3) -5417 ENSMUSG00000017713.9 ENSMUSG00000017713 ENSMUST00000138354 Tha1 protein_coding Interval_112071 chr4 34311368 34311582 + 0 NA Intergenic Intergenic -42568 ENSMUSG00000062554.7 ENSMUSG00000062554 ENSMUST00000122336 Gm12751 processed_pseudogene Interval_106307 chr3 95272819 95273406 + 0 NA intron (ENSMUSG00000015711.8, intron 1 of 7) protein_coding-intron (ENSMUSG00000015711.8, intron 1 of 7) -4168 ENSMUSG00000015711.8 ENSMUSG00000015711 ENSMUST00000148959 Prune1 protein_coding Interval_99393 chr2 160569031 160569811 + 0 NA intron (ENSMUSG00000078956.3, intron 2 of 2) lincRNA-intron (ENSMUSG00000078956.3, intron 2 of 2) -13936 ENSMUSG00000078955.3 ENSMUSG00000078955 ENSMUST00000128681 Gm14222 sense_intronic Interval_147424 chr7 66866826 66867244 + 0 NA intron (ENSMUSG00000058145.16, intron 3 of 10) protein_coding-intron (ENSMUSG00000058145.16, intron 3 of 22) 27300 ENSMUSG00000058145.16 ENSMUSG00000058145 ENSMUST00000154103 Adamts17 protein_coding Interval_154182 chr8 13250952 13251416 + 0 NA intron (ENSMUSG00000031448.12, intron 1 of 4) protein_coding-intron (ENSMUSG00000031448.12, intron 1 of 6) 2978 ENSMUSG00000031448.12 ENSMUSG00000031448 ENSMUST00000171619 Adprhl1 protein_coding Interval_29897 chr11 87591586 87592642 + 0 NA promoter-TSS (ENSMUSG00000018401.17) protein_coding-promoter-TSS (ENSMUSG00000018401.17) -112 ENSMUSG00000018401.17 ENSMUSG00000018401 ENSMUST00000134216 Mtmr4 protein_coding Interval_58342 chr15 32730815 32731324 + 0 NA Intergenic Intergenic 42083 ENSMUSG00000115749.1 ENSMUSG00000115749 ENSMUST00000227504 Gm41289 lincRNA Interval_113486 chr4 55308473 55309250 + 0 NA Intergenic Intergenic -9016 ENSMUSG00000077403.2 ENSMUSG00000077403 ENSMUST00000104215 Gm25419 snoRNA Interval_28949 chr11 79491252 79492014 + 0 NA intron (ENSMUSG00000020716.16, intron 35 of 56) protein_coding-intron (ENSMUSG00000020716.16, intron 36 of 57) -7602 ENSMUSG00000091523.1 ENSMUSG00000091523 ENSMUST00000165610 AU040972 antisense Interval_109583 chr3 144679211 144681381 + 0 NA Intergenic Intergenic 26337 ENSMUSG00000037062.13 ENSMUSG00000037062 ENSMUST00000200532 Sh3glb1 protein_coding Interval_35906 chr12 31818043 31818274 + 0 NA intron (ENSMUSG00000035933.5, intron 10 of 22) protein_coding-intron (ENSMUSG00000035933.5, intron 10 of 22) 31468 ENSMUSG00000111987.1 ENSMUSG00000111987 ENSMUST00000220137 Gm48809 antisense Interval_16043 chr10 60263478 60263792 + 0 NA Intergenic Intergenic -13993 ENSMUSG00000004207.14 ENSMUSG00000004207 ENSMUST00000165878 Psap protein_coding Interval_147022 chr7 58584307 58584812 + 0 NA Intergenic Intergenic 29639 ENSMUSG00000108877.1 ENSMUSG00000108877 ENSMUST00000208729 Gm45157 processed_pseudogene Interval_98148 chr2 148763502 148764256 + 0 NA Intergenic Intergenic 7618 ENSMUSG00000036958.5 ENSMUSG00000036958 ENSMUST00000028934 Cst11 protein_coding Interval_33877 chr11 119146061 119146987 + 0 NA TTS (ENSMUSG00000039976.4) protein_coding-TTS (ENSMUSG00000039976.4) 7613 ENSMUSG00000098704.1 ENSMUSG00000098704 ENSMUST00000183965 Mir6934 miRNA Interval_135913 chr6 48629187 48630012 + 0 NA TTS (ENSMUSG00000053297.14) protein_coding-TTS (ENSMUSG00000053297.14) 2318 ENSMUSG00000053297.14 ENSMUSG00000053297 ENSMUST00000154570 AI854703 protein_coding Interval_142852 chr6 146457963 146458979 + 0 NA intron (ENSMUSG00000030287.15, intron 1 of 18) protein_coding-intron (ENSMUSG00000030287.15, intron 2 of 56) 5136 ENSMUSG00000082120.1 ENSMUSG00000082120 ENSMUST00000117133 Gm15720 processed_pseudogene Interval_36313 chr12 41063228 41063470 + 0 NA intron (ENSMUSG00000056899.10, intron 2 of 2) protein_coding-intron (ENSMUSG00000056899.10, intron 2 of 6) -18410 ENSMUSG00000113994.1 ENSMUSG00000113994 ENSMUST00000220956 Gm47375 antisense Interval_15279 chr10 44056316 44056624 + 0 NA intron (ENSMUSG00000019866.15, intron 2 of 21) protein_coding-intron (ENSMUSG00000019866.15, intron 2 of 21) 2308 ENSMUSG00000019866.15 ENSMUSG00000019866 ENSMUST00000239010 Crybg1 protein_coding Interval_67069 chr16 42549405 42550233 + 0 NA Intergenic Intergenic -114107 ENSMUSG00000116679.1 ENSMUSG00000116679 ENSMUST00000232064 Gm49739 processed_pseudogene Interval_157360 chr8 69860585 69861422 + 0 NA intron (ENSMUSG00000031860.17, intron 2 of 2) protein_coding-intron (ENSMUSG00000031860.17, intron 2 of 7) 26684 ENSMUSG00000044006.8 ENSMUSG00000044006 ENSMUST00000057831 Cilp2 protein_coding Interval_2793 chr1 45313907 45314210 + 0 NA intron (ENSMUSG00000026043.18, intron 1 of 3) protein_coding-intron (ENSMUSG00000026043.18, intron 1 of 50) 2385 ENSMUSG00000105211.1 ENSMUSG00000105211 ENSMUST00000198698 Gm47302 miRNA Interval_146053 chr7 43547075 43548454 + 0 NA Intergenic Intergenic -13555 ENSMUSG00000108411.1 ENSMUSG00000108411 ENSMUST00000206608 Gm44818 lincRNA Interval_113826 chr4 59171916 59173969 + 0 NA Intergenic Intergenic -9786 ENSMUSG00000082978.1 ENSMUSG00000082978 ENSMUST00000118446 Rpsa-ps11 processed_pseudogene Interval_87686 chr19 54787130 54788177 + 0 NA Intergenic Intergenic 149071 ENSMUSG00000118207.1 ENSMUSG00000118207 ENSMUST00000237661 Gm50191 lincRNA Interval_157138 chr8 66273603 66273852 + 0 NA intron (ENSMUSG00000036469.16, intron 1 of 5) protein_coding-intron (ENSMUSG00000036469.16, intron 1 of 5) 113808 ENSMUSG00000086156.1 ENSMUSG00000086156 ENSMUST00000132019 Gm15354 antisense Interval_96272 chr2 121128458 121129690 + 0 NA intron (ENSMUSG00000074890.4, intron 1 of 1) protein_coding-intron (ENSMUSG00000074890.4, intron 1 of 1) 6222 ENSMUSG00000089009.1 ENSMUSG00000089009 ENSMUST00000158384 Gm23858 snRNA Interval_23412 chr11 22445511 22445745 + 0 NA Intergenic Intergenic -5853 ENSMUSG00000085856.1 ENSMUSG00000085856 ENSMUST00000127483 Gm12050 lincRNA Interval_105502 chr3 87097128 87097847 + 0 NA intron (ENSMUSG00000041734.15, intron 3 of 15) protein_coding-intron (ENSMUSG00000041734.15, intron 3 of 13) 30594 ENSMUSG00000077672.1 ENSMUSG00000077672 ENSMUST00000104484 Gm24472 snoRNA Interval_108729 chr3 130760686 130761520 + 0 NA TTS (ENSMUSG00000105716.1) lincRNA-TTS (ENSMUSG00000105716.1) 1838 ENSMUSG00000105716.1 ENSMUSG00000105716 ENSMUST00000196697 Gm43522 lincRNA Interval_158570 chr8 84565840 84566557 + 0 NA exon (ENSMUSG00000034656.18, exon 20 of 47) protein_coding-exon (ENSMUSG00000034656.18, exon 20 of 47) 50986 ENSMUSG00000086067.1 ENSMUSG00000086067 ENSMUST00000127527 Gm16183 antisense Interval_154458 chr8 18107882 18108345 + 0 NA Intergenic Intergenic 166708 ENSMUSG00000088320.1 ENSMUSG00000088320 ENSMUST00000157695 Gm25665 snoRNA Interval_12438 chr1 193476580 193476802 + 0 NA TTS (ENSMUSG00000102648.1) processed_pseudogene-TTS (ENSMUSG00000102648.1) 1401 ENSMUSG00000102648.1 ENSMUSG00000102648 ENSMUST00000191762 Gm38022 processed_pseudogene Interval_108841 chr3 132470640 132471678 + 0 NA Intergenic Intergenic -25611 ENSMUSG00000106280.1 ENSMUSG00000106280 ENSMUST00000198028 Gm42880 lincRNA Interval_141517 chr6 128829172 128829638 + 0 NA Intergenic Intergenic -3115 ENSMUSG00000079298.9 ENSMUSG00000079298 ENSMUST00000174544 Klrb1b protein_coding Interval_143306 chr7 5056773 5057144 + 0 NA promoter-TSS (ENSMUSG00000035228.15) protein_coding-promoter-TSS (ENSMUSG00000035228.15) 68 ENSMUSG00000086604.2 ENSMUSG00000086604 ENSMUST00000145534 Gm15510 antisense Interval_21007 chr10 123196189 123197590 + 0 NA promoter-TSS (ENSMUSG00000020124.10) protein_coding-promoter-TSS (ENSMUSG00000020124.10) 82 ENSMUSG00000099088.1 ENSMUSG00000099088 ENSMUST00000183953 Gm27920 miRNA Interval_129268 chr5 118567598 118567824 + 0 NA intron (ENSMUSG00000018076.12, intron 1 of 1) protein_coding-intron (ENSMUSG00000018076.12, intron 1 of 30) -4610 ENSMUSG00000106912.1 ENSMUSG00000106912 ENSMUST00000201036 Gm43785 TEC Interval_71372 chr17 22756410 22757969 + 0 NA Intergenic Intergenic 17244 ENSMUSG00000098164.2 ENSMUSG00000098164 ENSMUST00000182063 Gm5493 lincRNA Interval_130312 chr5 125581541 125582003 + 0 NA intron (ENSMUSG00000070498.3, intron 1 of 8) protein_coding-intron (ENSMUSG00000070498.3, intron 1 of 8) 49998 ENSMUSG00000070498.3 ENSMUSG00000070498 ENSMUST00000184422 Tmem132b protein_coding Interval_117738 chr4 125931037 125932276 + 0 NA Intergenic Intergenic -9239 ENSMUSG00000085562.7 ENSMUSG00000085562 ENSMUST00000144539 2610028E06Rik lincRNA Interval_162878 chr9 11169176 11169444 + 0 NA Intergenic Intergenic 20710 ENSMUSG00000111691.1 ENSMUSG00000111691 ENSMUST00000213828 Gm47002 lincRNA Interval_69808 chr16 96750615 96750814 + 0 NA intron (ENSMUSG00000117000.1, intron 2 of 4) protein_coding-intron (ENSMUSG00000050272.10, intron 11 of 32) 27202 ENSMUSG00000117000.1 ENSMUSG00000117000 ENSMUST00000233368 Gm32509 processed_transcript Interval_79951 chr18 36196017 36198000 + 0 NA exon (ENSMUSG00000060275.14, exon 1 of 10) protein_coding-exon (ENSMUSG00000060275.14, exon 1 of 10) -84089 ENSMUSG00000043991.5 ENSMUSG00000043991 ENSMUST00000051301 Pura protein_coding Interval_61355 chr15 81027368 81028068 + 0 NA intron (ENSMUSG00000042292.18, intron 2 of 2) protein_coding-intron (ENSMUSG00000042292.18, intron 2 of 12) -11925 ENSMUSG00000064587.1 ENSMUSG00000064587 ENSMUST00000082653 Gm25131 snRNA Interval_160630 chr8 111193271 111194497 + 0 NA intron (ENSMUSG00000003316.14, intron 4 of 25) protein_coding-intron (ENSMUSG00000003316.14, intron 3 of 24) -1080 ENSMUSG00000076382.1 ENSMUSG00000076382 ENSMUST00000102427 Gm23193 miRNA Interval_17366 chr10 76093500 76094058 + 0 NA intron (ENSMUSG00000020226.9, intron 5 of 14) protein_coding-intron (ENSMUSG00000020226.9, intron 5 of 14) 15162 ENSMUSG00000086798.1 ENSMUSG00000086798 ENSMUST00000124320 Gm16222 antisense Interval_61870 chr15 84784788 84786567 + 0 NA TTS (ENSMUSG00000016624.15) protein_coding-TTS (ENSMUSG00000016624.15) 1772 ENSMUSG00000016624.15 ENSMUSG00000016624 ENSMUST00000160389 Phf21b protein_coding Interval_88649 chr2 8720285 8720630 + 0 NA Intergenic Intergenic 86520 ENSMUSG00000084374.1 ENSMUSG00000084374 ENSMUST00000117255 Gm13255 processed_pseudogene Interval_139589 chr6 101761171 101762314 + 0 NA Intergenic Intergenic -12507 ENSMUSG00000052236.7 ENSMUSG00000052236 ENSMUST00000064002 Gm9871 lincRNA Interval_145625 chr7 36318372 36318583 + 0 NA Intergenic Intergenic 15962 ENSMUSG00000093359.1 ENSMUSG00000093359 ENSMUST00000175618 Gm23292 miRNA Interval_82243 chr18 69560196 69561000 + 0 NA intron (ENSMUSG00000053477.17, intron 1 of 5) protein_coding-intron (ENSMUSG00000053477.17, intron 7 of 20) 8635 ENSMUSG00000088659.1 ENSMUSG00000088659 ENSMUST00000158034 Gm24845 rRNA Interval_172638 chrX 38771517 38771694 + 0 NA Intergenic Intergenic 8862 ENSMUSG00000082723.1 ENSMUSG00000082723 ENSMUST00000122159 Gm14564 processed_pseudogene Interval_8275 chr1 136893366 136893655 + 0 NA intron (ENSMUSG00000026398.14, intron 6 of 8) protein_coding-intron (ENSMUSG00000026398.14, intron 6 of 8) 55663 ENSMUSG00000026398.14 ENSMUSG00000026398 ENSMUST00000195428 Nr5a2 protein_coding Interval_94899 chr2 101436859 101437646 + 0 NA Intergenic Intergenic -133372 ENSMUSG00000093614.1 ENSMUSG00000093614 ENSMUST00000177431 Gm20693 processed_pseudogene Interval_137645 chr6 77502722 77503072 + 0 NA intron (ENSMUSG00000063063.12, intron 8 of 18) protein_coding-intron (ENSMUSG00000063063.12, intron 7 of 17) -28702 ENSMUSG00000107917.1 ENSMUSG00000107917 ENSMUST00000204312 Gm44235 TEC Interval_81466 chr18 60934919 60936139 + 0 NA intron (ENSMUSG00000024617.16, intron 1 of 6) protein_coding-intron (ENSMUSG00000024617.16, intron 1 of 18) 8580 ENSMUSG00000024617.16 ENSMUSG00000024617 ENSMUST00000039904 Camk2a protein_coding Interval_122491 chr5 23415830 23416493 + 0 NA intron (ENSMUSG00000073147.3, intron 1 of 4) lincRNA-intron (ENSMUSG00000073147.3, intron 1 of 6) 17148 ENSMUSG00000073147.3 ENSMUSG00000073147 ENSMUST00000189045 5031425E22Rik lincRNA Interval_37180 chr12 59211460 59212647 + 0 NA intron (ENSMUSG00000035329.7, intron 1 of 3) protein_coding-intron (ENSMUSG00000035329.7, intron 1 of 3) -7617 ENSMUSG00000035329.7 ENSMUSG00000035329 ENSMUST00000161351 Fbxo33 protein_coding Interval_151926 chr7 127572761 127574238 + 0 NA promoter-TSS (ENSMUSG00000030815.11) protein_coding-promoter-TSS (ENSMUSG00000030815.11) -383 ENSMUSG00000101845.1 ENSMUSG00000101845 ENSMUST00000190938 Gm28198 antisense Interval_48096 chr13 95986284 95986768 + 0 NA intron (ENSMUSG00000051111.16, intron 6 of 10) protein_coding-intron (ENSMUSG00000051111.16, intron 7 of 12) 3700 ENSMUSG00000051111.16 ENSMUSG00000051111 ENSMUST00000220740 Sv2c protein_coding Interval_118118 chr4 129051008 129052166 + 0 NA intron (ENSMUSG00000085085.2, intron 1 of 1) lincRNA-intron (ENSMUSG00000085085.2, intron 1 of 1) 6396 ENSMUSG00000085085.2 ENSMUSG00000085085 ENSMUST00000149472 1700086P04Rik lincRNA Interval_149567 chr7 99632062 99632532 + 0 NA TTS (ENSMUSG00000097974.1) lincRNA-TTS (ENSMUSG00000097974.1) -5194 ENSMUSG00000096606.2 ENSMUSG00000096606 ENSMUST00000178124 Tpbgl protein_coding Interval_79151 chr18 25061431 25062020 + 0 NA intron (ENSMUSG00000034295.10, intron 13 of 24) protein_coding-intron (ENSMUSG00000034295.10, intron 15 of 26) 106969 ENSMUSG00000024269.11 ENSMUSG00000024269 ENSMUST00000115817 Tpgs2 protein_coding Interval_140428 chr6 118010982 118012120 + 0 NA exon (ENSMUSG00000030134.11, exon 1 of 13) protein_coding-exon (ENSMUSG00000030134.11, exon 1 of 13) 14344 ENSMUSG00000082791.3 ENSMUSG00000082791 ENSMUST00000118257 Gm4875 processed_pseudogene Interval_26387 chr11 57559537 57561639 + 0 NA Intergenic Intergenic -11924 ENSMUSG00000086028.1 ENSMUSG00000086028 ENSMUST00000128521 Gm12243 lincRNA Interval_169373 chr9 96764847 96766168 + 0 NA promoter-TSS (ENSMUSG00000101581.6) processed_transcript-promoter-TSS (ENSMUSG00000101581.6) -78 ENSMUSG00000101581.6 ENSMUSG00000101581 ENSMUST00000190054 C430002N11Rik processed_transcript Interval_20529 chr10 118592531 118592789 + 0 NA Intergenic Intergenic -37308 ENSMUSG00000112230.2 ENSMUSG00000112230 ENSMUST00000220034 Ifngas1 lincRNA Interval_61987 chr15 85664207 85664399 + 0 NA intron (ENSMUSG00000116305.1, intron 1 of 6) lincRNA-intron (ENSMUSG00000116004.1, intron 1 of 1) 10687 ENSMUSG00000116305.1 ENSMUSG00000116305 ENSMUST00000230286 Lncppara processed_transcript Interval_39147 chr12 85441210 85441809 + 0 NA Intergenic Intergenic -5260 ENSMUSG00000113940.1 ENSMUSG00000113940 ENSMUST00000220805 Gm40477 lincRNA Interval_134324 chr6 25111714 25112018 + 0 NA Intergenic Intergenic -32963 ENSMUSG00000087867.1 ENSMUSG00000087867 ENSMUST00000157242 Gm24443 snoRNA Interval_48234 chr13 97346074 97346265 + 0 NA Intergenic Intergenic -30065 ENSMUSG00000114425.1 ENSMUSG00000114425 ENSMUST00000223964 Gm33447 lincRNA Interval_18827 chr10 91142774 91144401 + 0 NA Intergenic Intergenic -19565 ENSMUSG00000061904.12 ENSMUSG00000061904 ENSMUST00000172442 Slc25a3 protein_coding Interval_12700 chr10 4374920 4376000 + 0 NA intron (ENSMUSG00000075327.10, intron 1 of 2) protein_coding-intron (ENSMUSG00000075327.10, intron 1 of 2) -1585 ENSMUSG00000075327.10 ENSMUSG00000075327 ENSMUST00000215860 Zbtb2 protein_coding Interval_138892 chr6 93013459 93013782 + 0 NA intron (ENSMUSG00000097462.7, intron 2 of 3) antisense-intron (ENSMUSG00000097462.7, intron 1 of 9) -65488 ENSMUSG00000108286.1 ENSMUSG00000108286 ENSMUST00000204131 Gm44224 TEC Interval_18162 chr10 83110686 83111225 + 0 NA intron (ENSMUSG00000034612.7, intron 2 of 2) protein_coding-intron (ENSMUSG00000034612.7, intron 2 of 2) 31083 ENSMUSG00000090200.1 ENSMUSG00000090200 ENSMUST00000160997 1700025N21Rik antisense Interval_80728 chr18 46620973 46622128 + 0 NA Intergenic Intergenic -9257 ENSMUSG00000117780.1 ENSMUSG00000117780 ENSMUST00000236340 Gm3734 lincRNA Interval_128064 chr5 110620497 110622050 + 0 NA exon (ENSMUSG00000033316.14, exon 11 of 11) protein_coding-exon (ENSMUSG00000033316.14, exon 11 of 11) 17752 ENSMUSG00000033316.14 ENSMUSG00000033316 ENSMUST00000165856 Galnt9 protein_coding Interval_71548 chr17 24494726 24495236 + 0 NA intron (ENSMUSG00000033597.9, intron 1 of 17) protein_coding-intron (ENSMUSG00000033597.9, intron 1 of 19) -6697 ENSMUSG00000033597.9 ENSMUSG00000033597 ENSMUST00000235032 Caskin1 protein_coding Interval_27635 chr11 69192771 69193590 + 0 NA intron (ENSMUSG00000020891.11, intron 1 of 1) protein_coding-intron (ENSMUSG00000020891.11, intron 3 of 13) 4204 ENSMUSG00000020891.11 ENSMUSG00000020891 ENSMUST00000156157 Alox8 protein_coding Interval_13419 chr10 18061637 18062013 + 0 NA intron (ENSMUSG00000019854.17, intron 1 of 5) protein_coding-intron (ENSMUSG00000019854.17, intron 1 of 19) -38735 ENSMUSG00000078453.3 ENSMUSG00000078453 ENSMUST00000220433 Abracl protein_coding Interval_58571 chr15 36223090 36223473 + 0 NA intron (ENSMUSG00000037617.12, intron 4 of 8) protein_coding-intron (ENSMUSG00000037617.12, intron 14 of 18) -8294 ENSMUSG00000037617.12 ENSMUSG00000037617 ENSMUST00000227849 Spag1 protein_coding Interval_95277 chr2 105510763 105511822 + 0 NA Intergenic Intergenic 26190 ENSMUSG00000081701.1 ENSMUSG00000081701 ENSMUST00000117578 Gm13890 transcribed_processed_pseudogene Interval_158989 chr8 88499713 88500268 + 0 NA Intergenic Intergenic -60043 ENSMUSG00000110187.1 ENSMUSG00000110187 ENSMUST00000209918 Gm45496 TEC Interval_72375 chr17 29466959 29468110 + 0 NA promoter-TSS (ENSMUSG00000097125.2) antisense-promoter-TSS (ENSMUSG00000097125.2) 2097 ENSMUSG00000097125.2 ENSMUSG00000097125 ENSMUST00000234684 Gm26885 antisense Interval_14722 chr10 39378235 39378481 + 0 NA intron (ENSMUSG00000019843.14, intron 1 of 12) protein_coding-intron (ENSMUSG00000019843.14, intron 1 of 13) -41651 ENSMUSG00000019843.14 ENSMUSG00000019843 ENSMUST00000123205 Fyn protein_coding Interval_130722 chr5 129987398 129987892 + 0 NA TTS (ENSMUSG00000066735.8) protein_coding-TTS (ENSMUSG00000066735.8) 10651 ENSMUSG00000066735.8 ENSMUSG00000066735 ENSMUST00000202486 Vkorc1l1 protein_coding Interval_83276 chr18 83355544 83355814 + 0 NA promoter-TSS (ENSMUSG00000088143.1) snRNA-promoter-TSS (ENSMUSG00000088143.1) 94 ENSMUSG00000117783.1 ENSMUSG00000117783 ENSMUST00000236106 Gm31265 lincRNA Interval_55659 chr14 98424830 98425074 + 0 NA Intergenic Intergenic 94748 ENSMUSG00000115486.1 ENSMUSG00000115486 ENSMUST00000226609 Gm49017 processed_pseudogene Interval_97319 chr2 133863407 133863635 + 0 NA Intergenic Intergenic -279100 ENSMUSG00000064983.1 ENSMUSG00000064983 ENSMUST00000083049 Gm25258 snRNA Interval_156330 chr8 47480267 47480982 + 0 NA Intergenic Intergenic 40206 ENSMUSG00000092710.1 ENSMUSG00000092710 ENSMUST00000174969 Gm22857 snoRNA Interval_114268 chr4 70355900 70356719 + 0 NA intron (ENSMUSG00000039298.16, intron 7 of 36) protein_coding-intron (ENSMUSG00000039298.16, intron 5 of 33) 54134 ENSMUSG00000039298.16 ENSMUSG00000039298 ENSMUST00000126416 Cdk5rap2 protein_coding Interval_18794 chr10 90873082 90873526 + 0 NA intron (ENSMUSG00000058589.14, intron 1 of 2) protein_coding-intron (ENSMUSG00000058589.14, intron 3 of 11) 22205 ENSMUSG00000112601.1 ENSMUSG00000112601 ENSMUST00000218261 Gm47590 TEC Interval_72165 chr17 28373610 28376159 + 0 NA Intergenic Intergenic -18710 ENSMUSG00000037446.14 ENSMUSG00000037446 ENSMUST00000150341 Tulp1 protein_coding Interval_162827 chr9 9783612 9784224 + 0 NA intron (ENSMUSG00000039488.15, intron 9 of 18) protein_coding-intron (ENSMUSG00000039488.15, intron 13 of 22) -110513 ENSMUSG00000098408.1 ENSMUSG00000098408 ENSMUST00000183808 Mir6237 miRNA Interval_55812 chr14 100437508 100437868 + 0 NA Intergenic Intergenic 19205 ENSMUSG00000094585.1 ENSMUSG00000094585 ENSMUST00000104165 Gm26367 snoRNA Interval_77438 chr17 88752224 88753888 + 0 NA intron (ENSMUSG00000024107.7, intron 5 of 6) protein_coding-intron (ENSMUSG00000024107.7, intron 9 of 10) 21000 ENSMUSG00000024107.7 ENSMUSG00000024107 ENSMUST00000234269 Lhcgr protein_coding Interval_76934 chr17 85030442 85031319 + 0 NA intron (ENSMUSG00000024131.8, intron 1 of 9) protein_coding-intron (ENSMUSG00000024131.8, intron 1 of 9) 2504 ENSMUSG00000024131.8 ENSMUSG00000024131 ENSMUST00000024944 Slc3a1 protein_coding Interval_139635 chr6 104033279 104033613 + 0 NA Intergenic Intergenic -68807 ENSMUSG00000108172.1 ENSMUSG00000108172 ENSMUST00000203981 Gm21054 processed_pseudogene Interval_63 GL456212.1 120399 120825 + 0 NA NA NA NA NA Interval_63219 chr15 99792190 99793417 + 0 NA intron (ENSMUSG00000023022.14, intron 6 of 7) protein_coding-intron (ENSMUSG00000023022.14, intron 9 of 10) 10323 ENSMUSG00000065643.1 ENSMUSG00000065643 ENSMUST00000083709 Gm25897 snRNA Interval_55449 chr14 87434295 87434808 + 0 NA intron (ENSMUSG00000022019.16, intron 1 of 11) protein_coding-intron (ENSMUSG00000022019.16, intron 1 of 13) 6201 ENSMUSG00000115564.1 ENSMUSG00000115564 ENSMUST00000226140 Gm49199 TEC Interval_9299 chr1 156024204 156024464 + 0 NA intron (ENSMUSG00000026466.16, intron 4 of 9) protein_coding-intron (ENSMUSG00000026466.16, intron 4 of 6) 5673 ENSMUSG00000102964.1 ENSMUSG00000102964 ENSMUST00000193532 9430034N14Rik TEC Interval_116110 chr4 107760075 107760679 + 0 NA promoter-TSS (ENSMUSG00000084874.4) processed_pseudogene-promoter-TSS (ENSMUSG00000084874.4) 88 ENSMUSG00000084874.4 ENSMUSG00000084874 ENSMUST00000154610 Gm12906 processed_pseudogene Interval_121160 chr4 153655692 153655999 + 0 NA Intergenic Intergenic -173666 ENSMUSG00000039546.9 ENSMUSG00000039546 ENSMUST00000149177 Ajap1 protein_coding Interval_115444 chr4 98980248 98981463 + 0 NA intron (ENSMUSG00000028556.15, intron 28 of 47) protein_coding-intron (ENSMUSG00000028556.15, intron 29 of 48) -52324 ENSMUSG00000028553.12 ENSMUSG00000028553 ENSMUST00000125546 Angptl3 protein_coding Interval_98817 chr2 155276093 155277447 + 0 NA promoter-TSS (ENSMUSG00000027602.9) protein_coding-promoter-TSS (ENSMUSG00000027602.9) -119 ENSMUSG00000027602.9 ENSMUSG00000027602 ENSMUST00000154596 Map1lc3a protein_coding Interval_133948 chr6 16316384 16318142 + 0 NA Intergenic Intergenic 79636 ENSMUSG00000108089.1 ENSMUSG00000108089 ENSMUST00000203594 Gm3148 processed_pseudogene Interval_140263 chr6 115886639 115887364 + 0 NA promoter-TSS (ENSMUSG00000030323.13) protein_coding-promoter-TSS (ENSMUSG00000030323.13) 33413 ENSMUSG00000030323.13 ENSMUSG00000030323 ENSMUST00000155565 Ift122 protein_coding Interval_89934 chr2 26586172 26587387 + 0 NA promoter-TSS (ENSMUSG00000026921.20) protein_coding-promoter-TSS (ENSMUSG00000026921.20) 140 ENSMUSG00000092356.2 ENSMUSG00000092356 ENSMUST00000174066 Gm20532 protein_coding Interval_28227 chr11 74529510 74531948 + 0 NA intron (ENSMUSG00000038807.19, intron 3 of 25) protein_coding-intron (ENSMUSG00000038807.19, intron 3 of 25) 80186 ENSMUSG00000038807.19 ENSMUSG00000038807 ENSMUST00000145524 Rap1gap2 protein_coding Interval_71552 chr17 24513553 24516365 + 0 NA promoter-TSS (ENSMUSG00000052752.15) protein_coding-promoter-TSS (ENSMUSG00000052752.15) -221 ENSMUSG00000052752.15 ENSMUSG00000052752 ENSMUST00000176361 Traf7 protein_coding Interval_146986 chr7 57175439 57176870 + 0 NA intron (ENSMUSG00000055026.13, intron 3 of 9) protein_coding-intron (ENSMUSG00000055026.13, intron 3 of 9) 150073 ENSMUSG00000108377.1 ENSMUSG00000108377 ENSMUST00000206642 Gm18642 processed_pseudogene Interval_150055 chr7 105446739 105447109 + 0 NA intron (ENSMUSG00000030898.15, intron 4 of 4) protein_coding-intron (ENSMUSG00000030898.15, intron 4 of 4) 21107 ENSMUSG00000030898.15 ENSMUSG00000030898 ENSMUST00000181339 Cckbr protein_coding Interval_35735 chr12 28732673 28734281 + 0 NA intron (ENSMUSG00000020628.16, intron 3 of 6) protein_coding-intron (ENSMUSG00000020628.16, intron 3 of 11) 16952 ENSMUSG00000020628.16 ENSMUSG00000020628 ENSMUST00000221335 Trappc12 protein_coding Interval_57391 chr15 10501004 10501440 + 0 NA intron (ENSMUSG00000022249.14, intron 11 of 11) protein_coding-intron (ENSMUSG00000022249.14, intron 11 of 11) 15173 ENSMUSG00000022248.14 ENSMUSG00000022248 ENSMUST00000170100 Rad1 protein_coding Interval_26904 chr11 61477031 61478273 + 0 NA Intergenic Intergenic -7839 ENSMUSG00000042436.12 ENSMUSG00000042436 ENSMUST00000126308 Mfap4 protein_coding Interval_158853 chr8 87243080 87243267 + 0 NA intron (ENSMUSG00000098257.1, intron 2 of 4) lincRNA-intron (ENSMUSG00000098257.1, intron 2 of 4) 40147 ENSMUSG00000098257.1 ENSMUSG00000098257 ENSMUST00000183344 Gm27169 lincRNA Interval_65470 chr16 22544894 22545655 + 0 NA intron (ENSMUSG00000022861.17, intron 20 of 24) protein_coding-intron (ENSMUSG00000022861.17, intron 19 of 23) -3279 ENSMUSG00000089663.1 ENSMUSG00000089663 ENSMUST00000159953 Gm15651 antisense Interval_127002 chr5 99416806 99417650 + 0 NA intron (ENSMUSG00000089809.9, intron 3 of 16) protein_coding-intron (ENSMUSG00000089809.9, intron 2 of 3) -91161 ENSMUSG00000104753.1 ENSMUSG00000104753 ENSMUST00000196037 Gm35172 lincRNA Interval_37262 chr12 63691369 63692428 + 0 NA Intergenic Intergenic 82030 ENSMUSG00000064958.1 ENSMUSG00000064958 ENSMUST00000083024 Gm24921 snRNA Interval_45379 chr13 54765652 54766907 + 0 NA promoter-TSS (ENSMUSG00000034891.13) protein_coding-promoter-TSS (ENSMUSG00000034891.13) -3212 ENSMUSG00000034891.13 ENSMUSG00000034891 ENSMUST00000138067 Sncb protein_coding Interval_168017 chr9 75426151 75426585 + 0 NA Intergenic Intergenic -15156 ENSMUSG00000042487.6 ENSMUSG00000042487 ENSMUST00000213248 Leo1 protein_coding Interval_126399 chr5 87969219 87970259 + 0 NA intron (ENSMUSG00000100704.1, intron 1 of 4) protein_coding-intron (ENSMUSG00000007457.3, intron 1 of 2) 222 ENSMUSG00000100704.1 ENSMUSG00000100704 ENSMUST00000187738 Gm28434 protein_coding Interval_15514 chr10 50436234 50436424 + 0 NA Intergenic Intergenic -10999 ENSMUSG00000111202.1 ENSMUSG00000111202 ENSMUST00000213811 Gm48275 lincRNA Interval_13517 chr10 18999348 18999779 + 0 NA Intergenic Intergenic 9282 ENSMUSG00000019850.11 ENSMUSG00000019850 ENSMUST00000146388 Tnfaip3 protein_coding Interval_148162 chr7 79562380 79562600 + 0 NA Intergenic Intergenic 16578 ENSMUSG00000108373.1 ENSMUSG00000108373 ENSMUST00000205591 Gm45168 lincRNA Interval_173676 chrX 101793618 101795122 + 0 NA promoter-TSS (ENSMUSG00000045010.14) protein_coding-promoter-TSS (ENSMUSG00000045010.14) 53 ENSMUSG00000045010.14 ENSMUSG00000045010 ENSMUST00000056225 Gm4779 protein_coding Interval_22295 chr11 8586556 8587856 + 0 NA intron (ENSMUSG00000020422.14, intron 3 of 30) protein_coding-intron (ENSMUSG00000020422.14, intron 3 of 30) 77475 ENSMUSG00000020422.14 ENSMUSG00000020422 ENSMUST00000134823 Tns3 protein_coding Interval_63838 chr16 3895228 3895921 + 0 NA exon (ENSMUSG00000005982.14, exon 3 of 4) protein_coding-exon (ENSMUSG00000005982.14, exon 3 of 4) 10891 ENSMUSG00000005982.14 ENSMUSG00000005982 ENSMUST00000150655 Naa60 protein_coding Interval_150373 chr7 109993351 109994012 + 0 NA Intergenic Intergenic 5603 ENSMUSG00000089306.1 ENSMUSG00000089306 ENSMUST00000158681 Gm24842 snRNA Interval_20216 chr10 116079171 116079837 + 0 NA intron (ENSMUSG00000020151.16, intron 2 of 13) protein_coding-intron (ENSMUSG00000020151.16, intron 2 of 13) 34198 ENSMUSG00000074734.3 ENSMUSG00000074734 ENSMUST00000219858 Taf7l2 protein_coding Interval_129566 chr5 120974501 120974786 + 0 NA intron (ENSMUSG00000029608.10, intron 4 of 21) protein_coding-intron (ENSMUSG00000029608.10, intron 4 of 21) -2296 ENSMUSG00000106841.1 ENSMUSG00000106841 ENSMUST00000201506 Gm42656 TEC Interval_15684 chr10 53518425 53519031 + 0 NA intron (ENSMUSG00000112739.1, intron 2 of 3) lincRNA-intron (ENSMUSG00000112739.1, intron 2 of 3) 261 ENSMUSG00000112739.1 ENSMUSG00000112739 ENSMUST00000218774 Gm20597 lincRNA Interval_58646 chr15 36786308 36786588 + 0 NA intron (ENSMUSG00000022285.17, intron 2 of 3) protein_coding-intron (ENSMUSG00000022285.17, intron 3 of 6) 10481 ENSMUSG00000022285.17 ENSMUSG00000022285 ENSMUST00000227067 Ywhaz protein_coding Interval_139969 chr6 113115594 113115811 + 0 NA intron (ENSMUSG00000034269.12, intron 9 of 17) protein_coding-intron (ENSMUSG00000034269.12, intron 8 of 21) 5285 ENSMUSG00000034269.12 ENSMUSG00000034269 ENSMUST00000156048 Setd5 protein_coding Interval_84533 chr19 12460466 12460867 + 0 NA promoter-TSS (ENSMUSG00000046805.10) protein_coding-promoter-TSS (ENSMUSG00000046805.10) -113 ENSMUSG00000046805.10 ENSMUSG00000046805 ENSMUST00000081035 Mpeg1 protein_coding Interval_19324 chr10 96718832 96719505 + 0 NA Intergenic Intergenic 7361 ENSMUSG00000112362.1 ENSMUSG00000112362 ENSMUST00000219424 Gm48507 processed_pseudogene Interval_159042 chr8 89025017 89026502 + 0 NA TTS (ENSMUSG00000099078.1) miRNA-TTS (ENSMUSG00000099078.1) 1024 ENSMUSG00000099078.1 ENSMUSG00000099078 ENSMUST00000183771 Mir8110 miRNA Interval_138593 chr6 89867452 89868152 + 0 NA exon (ENSMUSG00000068231.5, exon 3 of 3) protein_coding-exon (ENSMUSG00000068231.5, exon 3 of 3) 8611 ENSMUSG00000068231.5 ENSMUSG00000068231 ENSMUST00000089418 Vmn1r43 protein_coding Interval_53411 chr14 57092797 57093642 + 0 NA Intergenic Intergenic 11483 ENSMUSG00000046352.7 ENSMUSG00000046352 ENSMUST00000055698 Gjb2 protein_coding Interval_77733 chr17 94758400 94759181 + 0 NA intron (ENSMUSG00000098090.8, intron 3 of 9) transcribed_unprocessed_pseudogene-intron (ENSMUSG00000098090.8, intron 3 of 9) -1918 ENSMUSG00000098121.1 ENSMUSG00000098121 ENSMUST00000182794 Gm27038 processed_pseudogene Interval_148862 chr7 89403353 89405237 + 0 NA promoter-TSS (ENSMUSG00000049791.4) protein_coding-promoter-TSS (ENSMUSG00000049791.4) -60 ENSMUSG00000049791.4 ENSMUSG00000049791 ENSMUST00000058755 Fzd4 protein_coding Interval_169233 chr9 95684597 95684966 + 0 NA intron (ENSMUSG00000015354.8, intron 2 of 4) protein_coding-intron (ENSMUSG00000015354.8, intron 5 of 8) 4475 ENSMUSG00000015354.8 ENSMUSG00000015354 ENSMUST00000151210 Pcolce2 protein_coding Interval_51293 chr14 25799954 25800658 + 0 NA Intergenic Intergenic 9575 ENSMUSG00000099057.1 ENSMUSG00000099057 ENSMUST00000184296 Gm27185 processed_pseudogene Interval_6573 chr1 117301638 117302032 + 0 NA Intergenic Intergenic 91697 ENSMUSG00000101154.1 ENSMUSG00000101154 ENSMUST00000189740 Gm17777 processed_pseudogene Interval_160380 chr8 108847177 108848236 + 0 NA intron (ENSMUSG00000038872.10, intron 9 of 15) protein_coding-intron (ENSMUSG00000038872.10, intron 3 of 9) -19856 ENSMUSG00000102989.1 ENSMUSG00000102989 ENSMUST00000195769 Gm38318 TEC Interval_71969 chr17 27304096 27305379 + 0 NA Intergenic Intergenic 12358 ENSMUSG00000105142.1 ENSMUSG00000105142 ENSMUST00000198396 Mir7214 miRNA Interval_153220 chr7 142542752 142543098 + 0 NA Intergenic Intergenic 9764 ENSMUSG00000037772.13 ENSMUSG00000037772 ENSMUST00000141098 Mrpl23 protein_coding Interval_21070 chr10 125895914 125896112 + 0 NA Intergenic Intergenic -70221 ENSMUSG00000020105.9 ENSMUSG00000020105 ENSMUST00000219974 Lrig3 protein_coding Interval_44501 chr13 45477115 45477723 + 0 NA Intergenic Intergenic 8911 ENSMUSG00000089211.1 ENSMUSG00000089211 ENSMUST00000158586 Gm23387 snRNA Interval_55597 chr14 94735216 94736013 + 0 NA promoter-TSS (ENSMUSG00000115822.1) lincRNA-promoter-TSS (ENSMUSG00000115822.1) -149 ENSMUSG00000115822.1 ENSMUSG00000115822 ENSMUST00000227716 Gm33450 lincRNA Interval_60337 chr15 72996734 72996982 + 0 NA intron (ENSMUSG00000047921.17, intron 8 of 8) protein_coding-intron (ENSMUSG00000047921.17, intron 8 of 21) 64187 ENSMUSG00000047921.17 ENSMUSG00000047921 ENSMUST00000228960 Trappc9 protein_coding Interval_155614 chr8 35183354 35184594 + 0 NA promoter-TSS (ENSMUSG00000110314.1) lincRNA-promoter-TSS (ENSMUSG00000110314.1) -88 ENSMUSG00000110314.1 ENSMUSG00000110314 ENSMUST00000209412 Gm45625 lincRNA Interval_52465 chr14 46725775 46726216 + 0 NA Intergenic Intergenic 20404 ENSMUSG00000115690.1 ENSMUSG00000115690 ENSMUST00000226531 Gm48924 lincRNA Interval_118072 chr4 128776563 128777742 + 0 NA TTS (ENSMUSG00000028799.15) protein_coding-TTS (ENSMUSG00000028799.15) 21788 ENSMUSG00000028794.13 ENSMUSG00000028794 ENSMUST00000030585 A3galt2 protein_coding Interval_104040 chr3 57619858 57620249 + 0 NA TTS (ENSMUSG00000097339.5) lincRNA-TTS (ENSMUSG00000097339.5) 3444 ENSMUSG00000098401.1 ENSMUSG00000098401 ENSMUST00000183760 Mir6377 miRNA Interval_91863 chr2 50555293 50555548 + 0 NA Intergenic Intergenic 7506 ENSMUSG00000085429.1 ENSMUSG00000085429 ENSMUST00000146690 Gm13485 lincRNA Interval_79336 chr18 30687913 30688399 + 0 NA Intergenic Intergenic -79266 ENSMUSG00000117526.1 ENSMUSG00000117526 ENSMUST00000235078 Gm41780 processed_pseudogene Interval_3784 chr1 63080008 63080606 + 0 NA intron (ENSMUSG00000040865.15, intron 5 of 11) protein_coding-intron (ENSMUSG00000040865.15, intron 4 of 10) 6533 ENSMUSG00000081429.1 ENSMUSG00000081429 ENSMUST00000118179 Rps27-ps1 processed_pseudogene Interval_49187 chr13 109260209 109261387 + 0 NA exon (ENSMUSG00000021699.17, exon 1 of 15) protein_coding-exon (ENSMUSG00000021699.17, exon 1 of 15) -63946 ENSMUSG00000076946.2 ENSMUSG00000076946 ENSMUST00000103758 Mir582 miRNA Interval_89862 chr2 26074849 26076319 + 0 NA intron (ENSMUSG00000026932.14, intron 2 of 2) protein_coding-intron (ENSMUSG00000026932.14, intron 2 of 5) 16235 ENSMUSG00000026932.14 ENSMUSG00000026932 ENSMUST00000149408 Nacc2 protein_coding Interval_144119 chr7 19514222 19514585 + 0 NA promoter-TSS (ENSMUSG00000002043.17) protein_coding-promoter-TSS (ENSMUSG00000002043.17) -4328 ENSMUSG00000060621.6 ENSMUSG00000060621 ENSMUST00000214205 Nkpd1 protein_coding Interval_165612 chr9 50421030 50421265 + 0 NA Intergenic Intergenic -73380 ENSMUSG00000032068.14 ENSMUSG00000032068 ENSMUST00000188047 Plet1 protein_coding Interval_62834 chr15 97327050 97328076 + 0 NA intron (ENSMUSG00000044250.8, intron 3 of 5) protein_coding-intron (ENSMUSG00000044250.8, intron 3 of 5) -24589 ENSMUSG00000116291.1 ENSMUSG00000116291 ENSMUST00000229443 Gm4383 processed_pseudogene Interval_45834 chr13 58443688 58444281 + 0 NA exon (ENSMUSG00000114654.1, exon 2 of 4) lincRNA-exon (ENSMUSG00000114654.1, exon 2 of 4) 963 ENSMUSG00000114654.1 ENSMUSG00000114654 ENSMUST00000225848 Gm47918 lincRNA Interval_78869 chr18 21054949 21055648 + 0 NA Intergenic Intergenic -17046 ENSMUSG00000024313.8 ENSMUSG00000024313 ENSMUST00000082235 Mep1b protein_coding Interval_143369 chr7 6178597 6179941 + 0 NA promoter-TSS (ENSMUSG00000109165.1) sense_intronic-promoter-TSS (ENSMUSG00000109165.1) -706 ENSMUSG00000109165.1 ENSMUSG00000109165 ENSMUST00000208578 Gm45148 sense_intronic Interval_129999 chr5 123622354 123622901 + 0 NA intron (ENSMUSG00000049550.17, intron 12 of 13) protein_coding-intron (ENSMUSG00000049550.17, intron 13 of 24) -5574 ENSMUSG00000084552.1 ENSMUSG00000084552 ENSMUST00000122603 Gm24840 snRNA Interval_18340 chr10 85038425 85039140 + 0 NA Intergenic Intergenic 63713 ENSMUSG00000050035.7 ENSMUSG00000050035 ENSMUST00000216889 Fhl4 protein_coding Interval_131923 chr5 140810508 140811984 + 0 NA intron (ENSMUSG00000000149.10, intron 1 of 2) protein_coding-intron (ENSMUSG00000000149.10, intron 1 of 3) 18911 ENSMUSG00000000149.10 ENSMUSG00000000149 ENSMUST00000198447 Gna12 protein_coding Interval_105362 chr3 85507873 85508500 + 0 NA intron (ENSMUSG00000102805.5, intron 3 of 9) protein_coding-intron (ENSMUSG00000102805.5, intron 3 of 9) 40809 ENSMUSG00000080424.1 ENSMUSG00000080424 ENSMUST00000116774 Mir466k miRNA Interval_22376 chr11 9250792 9250979 + 0 NA intron (ENSMUSG00000004668.14, intron 4 of 5) protein_coding-intron (ENSMUSG00000004668.14, intron 4 of 61) 57434 ENSMUSG00000004668.14 ENSMUSG00000004668 ENSMUST00000151522 Abca13 protein_coding Interval_165022 chr9 43984236 43985287 + 0 NA Intergenic Intergenic -5284 ENSMUSG00000111637.1 ENSMUSG00000111637 ENSMUST00000214985 Gm10688 lincRNA Interval_26375 chr11 57474264 57475388 + 0 NA Intergenic Intergenic 25719 ENSMUSG00000082476.1 ENSMUSG00000082476 ENSMUST00000118824 Gm12242 processed_pseudogene Interval_71917 chr17 26997567 26998038 + 0 NA intron (ENSMUSG00000117819.1, intron 2 of 8) protein_coding-intron (ENSMUSG00000117819.1, intron 2 of 8) -19176 ENSMUSG00000118007.1 ENSMUSG00000118007 ENSMUST00000237254 Gm50254 antisense Interval_6730 chr1 119036441 119036771 + 0 NA intron (ENSMUSG00000048402.14, intron 1 of 6) protein_coding-intron (ENSMUSG00000048402.14, intron 1 of 13) 16733 ENSMUSG00000048402.14 ENSMUSG00000048402 ENSMUST00000159678 Gli2 protein_coding Interval_134447 chr6 28815171 28815476 + 0 NA intron (ENSMUSG00000001424.14, intron 16 of 16) protein_coding-intron (ENSMUSG00000001424.14, intron 16 of 23) 15022 ENSMUSG00000049939.6 ENSMUSG00000049939 ENSMUST00000062304 Lrrc4 protein_coding Interval_32283 chr11 106679751 106680057 + 0 NA intron (ENSMUSG00000020717.19, intron 11 of 14) protein_coding-intron (ENSMUSG00000020717.19, intron 13 of 15) -16578 ENSMUSG00000020717.19 ENSMUSG00000020717 ENSMUST00000124958 Pecam1 protein_coding Interval_27701 chr11 69557376 69557852 + 0 NA intron (ENSMUSG00000003934.5, intron 1 of 4) protein_coding-intron (ENSMUSG00000003934.5, intron 1 of 4) 2591 ENSMUSG00000003934.5 ENSMUSG00000003934 ENSMUST00000004036 Efnb3 protein_coding Interval_107484 chr3 108027323 108027558 + 0 NA Intergenic Intergenic -2191 ENSMUSG00000087357.1 ENSMUSG00000087357 ENSMUST00000138374 Gm12498 lincRNA Interval_110938 chr4 10587962 10588164 + 0 NA intron (ENSMUSG00000086080.7, intron 1 of 3) lincRNA-intron (ENSMUSG00000086080.7, intron 1 of 3) 7251 ENSMUSG00000081361.1 ENSMUSG00000081361 ENSMUST00000118586 Gm11813 processed_pseudogene Interval_8906 chr1 151977475 151979319 + 0 NA intron (ENSMUSG00000032666.16, intron 3 of 6) protein_coding-intron (ENSMUSG00000032666.16, intron 3 of 5) 102978 ENSMUSG00000100685.1 ENSMUSG00000100685 ENSMUST00000187716 Gm28610 antisense Interval_117627 chr4 125127395 125128443 + 0 NA promoter-TSS (ENSMUSG00000042677.7) protein_coding-promoter-TSS (ENSMUSG00000042677.7) -5399 ENSMUSG00000042677.7 ENSMUSG00000042677 ENSMUST00000131685 Zc3h12a protein_coding Interval_67372 chr16 48194635 48194907 + 0 NA Intergenic Intergenic -23834 ENSMUSG00000048164.9 ENSMUSG00000048164 ENSMUST00000062591 Gm7204 processed_pseudogene Interval_154326 chr8 14532957 14533846 + 0 NA intron (ENSMUSG00000047495.15, intron 3 of 14) protein_coding-intron (ENSMUSG00000047495.15, intron 3 of 14) 183223 ENSMUSG00000106670.1 ENSMUSG00000106670 ENSMUST00000199602 Gm44347 miRNA Interval_151544 chr7 123411298 123411702 + 0 NA intron (ENSMUSG00000030763.7, intron 6 of 10) protein_coding-intron (ENSMUSG00000030763.7, intron 6 of 10) -16360 ENSMUSG00000030763.7 ENSMUSG00000030763 ENSMUST00000206727 Lcmt1 protein_coding Interval_52501 chr14 47107213 47107613 + 0 NA intron (ENSMUSG00000072589.4, intron 3 of 3) antisense-intron (ENSMUSG00000072589.4, intron 3 of 3) 8658 ENSMUSG00000072589.4 ENSMUSG00000072589 ENSMUST00000228010 Gm10371 antisense Interval_154356 chr8 14949509 14950727 + 0 NA intron (ENSMUSG00000071176.10, intron 2 of 18) protein_coding-intron (ENSMUSG00000071176.10, intron 11 of 28) 4817 ENSMUSG00000071176.10 ENSMUSG00000071176 ENSMUST00000162636 Arhgef10 protein_coding Interval_15090 chr10 42501397 42502852 + 0 NA promoter-TSS (ENSMUSG00000019804.12) protein_coding-promoter-TSS (ENSMUSG00000019804.12) 94 ENSMUSG00000019804.12 ENSMUSG00000019804 ENSMUST00000105499 Snx3 protein_coding Interval_81488 chr18 61076857 61077568 + 0 NA intron (ENSMUSG00000024620.11, intron 16 of 23) protein_coding-intron (ENSMUSG00000024620.11, intron 15 of 22) -23386 ENSMUSG00000024621.16 ENSMUSG00000024621 ENSMUST00000237485 Csf1r protein_coding Interval_157149 chr8 66456641 66457780 + 0 NA intron (ENSMUSG00000036469.16, intron 5 of 5) protein_coding-intron (ENSMUSG00000036469.16, intron 3 of 3) -14401 ENSMUSG00000085109.1 ENSMUSG00000085109 ENSMUST00000140669 Gm15356 antisense Interval_66950 chr16 38729663 38730204 + 0 NA Intergenic Intergenic -17035 ENSMUSG00000022799.4 ENSMUSG00000022799 ENSMUST00000132697 Arhgap31 protein_coding Interval_159353 chr8 94000540 94001469 + 0 NA intron (ENSMUSG00000031751.14, intron 2 of 3) protein_coding-intron (ENSMUSG00000031751.14, intron 2 of 13) 11123 ENSMUSG00000031751.14 ENSMUSG00000031751 ENSMUST00000143265 Amfr protein_coding Interval_29507 chr11 84519628 84520548 + 0 NA intron (ENSMUSG00000018698.15, intron 3 of 3) protein_coding-intron (ENSMUSG00000018698.15, intron 4 of 4) 2243 ENSMUSG00000018698.15 ENSMUSG00000018698 ENSMUST00000092827 Lhx1 protein_coding Interval_141696 chr6 133706663 133707339 + 0 NA exon (ENSMUSG00000107635.1, exon 1 of 1) TEC-exon (ENSMUSG00000107635.1, exon 1 of 1) 131 ENSMUSG00000107635.1 ENSMUSG00000107635 ENSMUST00000203875 Gm44247 TEC Interval_51252 chr14 25549673 25550334 + 0 NA intron (ENSMUSG00000007817.15, intron 3 of 3) protein_coding-intron (ENSMUSG00000007817.15, intron 3 of 23) 15564 ENSMUSG00000093081.1 ENSMUSG00000093081 ENSMUST00000175340 Mir3075 miRNA Interval_128351 chr5 112681998 112683689 + 0 NA Intergenic Intergenic 7468 ENSMUSG00000104807.1 ENSMUSG00000104807 ENSMUST00000197981 Gm42865 lincRNA Interval_144487 chr7 25412799 25413352 + 0 NA promoter-TSS (ENSMUSG00000060188.6) protein_coding-promoter-TSS (ENSMUSG00000060188.6) -189 ENSMUSG00000060188.6 ENSMUSG00000060188 ENSMUST00000074040 Cxcl17 protein_coding Interval_140867 chr6 122468795 122469821 + 0 NA intron (ENSMUSG00000040649.15, intron 2 of 2) protein_coding-intron (ENSMUSG00000040649.15, intron 2 of 5) 12404 ENSMUSG00000055093.10 ENSMUSG00000055093 ENSMUST00000119780 Gm8430 processed_pseudogene Interval_118486 chr4 131977308 131977821 + 0 NA intron (ENSMUSG00000028906.17, intron 9 of 14) protein_coding-intron (ENSMUSG00000028906.17, intron 9 of 20) 14725 ENSMUSG00000098577.1 ENSMUSG00000098577 ENSMUST00000184484 Gm27445 miRNA Interval_52944 chr14 52173660 52173909 + 0 NA exon (ENSMUSG00000035726.8, exon 17 of 26) protein_coding-exon (ENSMUSG00000035726.8, exon 17 of 26) -10654 ENSMUSG00000035726.8 ENSMUSG00000035726 ENSMUST00000227577 Supt16 protein_coding Interval_51157 chr14 24238228 24238766 + 0 NA intron (ENSMUSG00000091079.1, intron 1 of 1) protein_coding-intron (ENSMUSG00000021782.14, intron 1 of 30) 4894 ENSMUSG00000091079.1 ENSMUSG00000091079 ENSMUST00000163715 Gm17105 sense_intronic Interval_124968 chr5 62707207 62707432 + 0 NA intron (ENSMUSG00000037999.13, intron 1 of 1) protein_coding-intron (ENSMUSG00000037999.13, intron 7 of 32) -23758 ENSMUSG00000037999.13 ENSMUSG00000037999 ENSMUST00000159470 Arap2 protein_coding Interval_168301 chr9 78525319 78526140 + 0 NA Intergenic Intergenic 5183 ENSMUSG00000111417.1 ENSMUSG00000111417 ENSMUST00000214586 Gm47430 lincRNA Interval_11245 chr1 180428130 180428664 + 0 NA Intergenic Intergenic 37484 ENSMUSG00000053963.7 ENSMUSG00000053963 ENSMUST00000211782 Stum protein_coding Interval_3267 chr1 55263740 55264101 + 0 NA intron (ENSMUSG00000025977.15, intron 2 of 2) protein_coding-intron (ENSMUSG00000025977.15, intron 2 of 2) 26743 ENSMUSG00000046994.9 ENSMUSG00000046994 ENSMUST00000061334 Mars2 protein_coding Interval_95869 chr2 117499608 117500315 + 0 NA Intergenic Intergenic -82264 ENSMUSG00000085681.1 ENSMUSG00000085681 ENSMUST00000138372 Gm13982 lincRNA Interval_10300 chr1 168288046 168288331 + 0 NA intron (ENSMUSG00000052534.15, intron 2 of 7) protein_coding-intron (ENSMUSG00000052534.15, intron 2 of 6) 49483 ENSMUSG00000103780.1 ENSMUSG00000103780 ENSMUST00000192272 Gm37524 TEC Interval_160317 chr8 108193708 108195334 + 0 NA intron (ENSMUSG00000038872.10, intron 3 of 4) protein_coding-intron (ENSMUSG00000038872.10, intron 2 of 15) 199962 ENSMUSG00000038872.10 ENSMUSG00000038872 ENSMUST00000043896 Zfhx3 protein_coding Interval_42034 chr13 6658949 6659856 + 0 NA Intergenic Intergenic 3492 ENSMUSG00000068324.5 ENSMUSG00000068324 ENSMUST00000089635 Gm10029 processed_pseudogene Interval_65246 chr16 20822482 20823048 + 0 NA promoter-TSS (ENSMUSG00000099764.1) processed_pseudogene-promoter-TSS (ENSMUSG00000099764.1) -125 ENSMUSG00000099764.1 ENSMUSG00000099764 ENSMUST00000127484 Rps10-ps2 processed_pseudogene Interval_12141 chr1 190055959 190056274 + 0 NA Intergenic Intergenic -112554 ENSMUSG00000099404.1 ENSMUSG00000099404 ENSMUST00000189880 Gm28172 antisense Interval_76855 chr17 84546400 84546674 + 0 NA TTS (ENSMUSG00000117391.1) antisense-TTS (ENSMUSG00000117391.1) 4706 ENSMUSG00000117391.1 ENSMUSG00000117391 ENSMUST00000234072 4930500A05Rik antisense Interval_128403 chr5 113132831 113133579 + 0 NA intron (ENSMUSG00000051339.10, intron 6 of 12) protein_coding-intron (ENSMUSG00000051339.10, intron 1 of 7) 4781 ENSMUSG00000051339.10 ENSMUSG00000051339 ENSMUST00000211733 2900026A02Rik protein_coding Interval_85526 chr19 28090422 28091056 + 0 NA TTS (ENSMUSG00000101084.1) lincRNA-TTS (ENSMUSG00000101084.1) 1883 ENSMUSG00000101084.1 ENSMUSG00000101084 ENSMUST00000186880 Gm28228 lincRNA Interval_119821 chr4 140205482 140206510 + 0 NA intron (ENSMUSG00000040972.8, intron 1 of 9) protein_coding-intron (ENSMUSG00000040972.8, intron 1 of 9) 40788 ENSMUSG00000040972.8 ENSMUSG00000040972 ENSMUST00000039331 Igsf21 protein_coding Interval_106807 chr3 100998907 100999481 + 0 NA intron (ENSMUSG00000086564.9, intron 8 of 8) protein_coding-intron (ENSMUSG00000086564.9, intron 8 of 8) 22982 ENSMUSG00000086564.9 ENSMUSG00000086564 ENSMUST00000167086 Cd101 protein_coding Interval_65510 chr16 22930975 22932101 + 0 NA intron (ENSMUSG00000022871.13, intron 4 of 8) protein_coding-intron (ENSMUSG00000022871.13, intron 3 of 7) 11222 ENSMUSG00000022871.13 ENSMUSG00000022871 ENSMUST00000167399 Fetub protein_coding Interval_152307 chr7 131598028 131599133 + 0 NA intron (ENSMUSG00000030849.18, intron 2 of 6) protein_coding-intron (ENSMUSG00000030849.18, intron 2 of 6) 16408 ENSMUSG00000062758.6 ENSMUSG00000062758 ENSMUST00000085365 Gm16477 processed_pseudogene Interval_10989 chr1 177786868 177789722 + 0 NA TTS (ENSMUSG00000089657.1) processed_pseudogene-TTS (ENSMUSG00000089657.1) 1439 ENSMUSG00000089657.1 ENSMUSG00000089657 ENSMUST00000161442 Gm16585 processed_pseudogene Interval_109398 chr3 141792238 141793070 + 0 NA TTS (ENSMUSG00000059921.15) protein_coding-TTS (ENSMUSG00000059921.15) 106101 ENSMUSG00000106071.1 ENSMUSG00000106071 ENSMUST00000199604 Gm43826 TEC Interval_55148 chr14 78665240 78665626 + 0 NA intron (ENSMUSG00000034731.11, intron 2 of 29) protein_coding-intron (ENSMUSG00000034731.11, intron 1 of 28) -36159 ENSMUSG00000034731.11 ENSMUSG00000034731 ENSMUST00000227820 Dgkh protein_coding Interval_83310 chr18 84080390 84080634 + 0 NA intron (ENSMUSG00000046982.11, intron 1 of 1) protein_coding-intron (ENSMUSG00000046982.11, intron 1 of 1) 7194 ENSMUSG00000046982.11 ENSMUSG00000046982 ENSMUST00000237918 Tshz1 protein_coding Interval_136261 chr6 52370425 52371416 + 0 NA Intergenic Intergenic -13096 ENSMUSG00000084282.1 ENSMUSG00000084282 ENSMUST00000117393 Gm15054 processed_pseudogene Interval_171527 chr9 119029598 119029945 + 0 NA intron (ENSMUSG00000047409.13, intron 4 of 5) protein_coding-intron (ENSMUSG00000047409.13, intron 4 of 7) -2025 ENSMUSG00000065513.1 ENSMUSG00000065513 ENSMUST00000083579 Mir26a-1 miRNA Interval_109827 chr3 148515932 148516124 + 0 NA Intergenic Intergenic -53036 ENSMUSG00000103566.1 ENSMUSG00000103566 ENSMUST00000192546 Gm38068 TEC Interval_99397 chr2 160592830 160593544 + 0 NA intron (ENSMUSG00000078956.3, intron 1 of 2) lincRNA-intron (ENSMUSG00000078956.3, intron 1 of 2) 9830 ENSMUSG00000078955.3 ENSMUSG00000078955 ENSMUST00000128681 Gm14222 sense_intronic Interval_97871 chr2 144616518 144617417 + 0 NA intron (ENSMUSG00000027430.12, intron 1 of 4) protein_coding-intron (ENSMUSG00000027430.12, intron 2 of 5) 349 ENSMUSG00000027430.12 ENSMUSG00000027430 ENSMUST00000145602 Dtd1 protein_coding Interval_108647 chr3 129757323 129758049 + 0 NA intron (ENSMUSG00000105960.1, intron 3 of 4) antisense-intron (ENSMUSG00000105960.1, intron 3 of 4) 3928 ENSMUSG00000105960.1 ENSMUSG00000105960 ENSMUST00000199846 6330410L21Rik antisense Interval_47536 chr13 86996063 86996428 + 0 NA Intergenic Intergenic 238349 ENSMUSG00000114856.1 ENSMUSG00000114856 ENSMUST00000224195 Gm47642 processed_pseudogene Interval_106566 chr3 97297022 97298439 + 0 NA intron (ENSMUSG00000038256.15, intron 1 of 3) protein_coding-intron (ENSMUSG00000038256.15, intron 1 of 3) 187 ENSMUSG00000038256.15 ENSMUSG00000038256 ENSMUST00000127319 Bcl9 protein_coding Interval_62080 chr15 86252725 86252932 + 0 NA intron (ENSMUSG00000051864.10, intron 4 of 12) protein_coding-intron (ENSMUSG00000051864.10, intron 4 of 12) 17323 ENSMUSG00000051864.10 ENSMUSG00000051864 ENSMUST00000229242 Tbc1d22a protein_coding Interval_34635 chr12 8243401 8243754 + 0 NA intron (ENSMUSG00000037669.15, intron 3 of 4) protein_coding-intron (ENSMUSG00000037669.15, intron 4 of 6) -34412 ENSMUSG00000112694.1 ENSMUSG00000112694 ENSMUST00000217927 Gm33037 antisense Interval_112872 chr4 45700098 45700470 + 0 NA intron (ENSMUSG00000073860.12, intron 1 of 2) lincRNA-intron (ENSMUSG00000073860.12, intron 1 of 2) -14885 ENSMUSG00000085305.1 ENSMUSG00000085305 ENSMUST00000124989 Gm12410 lincRNA Interval_85924 chr19 33286063 33286815 + 0 NA intron (ENSMUSG00000071573.14, intron 2 of 4) polymorphic_pseudogene-intron (ENSMUSG00000071573.14, intron 4 of 6) 105856 ENSMUSG00000071573.14 ENSMUSG00000071573 ENSMUST00000163093 Rnls polymorphic_pseudogene Interval_154001 chr8 11777228 11777614 + 0 NA intron (ENSMUSG00000031511.16, intron 1 of 5) protein_coding-intron (ENSMUSG00000031511.16, intron 2 of 17) -20033 ENSMUSG00000031511.16 ENSMUSG00000031511 ENSMUST00000151225 Arhgef7 protein_coding Interval_116468 chr4 113825660 113826168 + 0 NA intron (ENSMUSG00000078598.11, intron 18 of 57) protein_coding-intron (ENSMUSG00000078598.11, intron 18 of 58) 173589 ENSMUSG00000078598.11 ENSMUSG00000078598 ENSMUST00000153413 Skint5 protein_coding Interval_131769 chr5 139764070 139764953 + 0 NA TTS (ENSMUSG00000029547.10) protein_coding-TTS (ENSMUSG00000029547.10) 3432 ENSMUSG00000098574.1 ENSMUSG00000098574 ENSMUST00000184414 Mir7037 miRNA Interval_26761 chr11 60292788 60295121 + 0 NA intron (ENSMUSG00000000538.18, intron 1 of 8) protein_coding-intron (ENSMUSG00000000538.18, intron 1 of 12) 8870 ENSMUSG00000098349.1 ENSMUSG00000098349 ENSMUST00000183802 Gm27711 miRNA Interval_104820 chr3 75465986 75466974 + 0 NA intron (ENSMUSG00000104301.3, intron 1 of 6) protein_coding-intron (ENSMUSG00000104301.3, intron 1 of 14) 15676 ENSMUSG00000104301.3 ENSMUSG00000104301 ENSMUST00000204982 Wdr49 protein_coding Interval_144134 chr7 19579400 19581449 + 0 NA TTS (ENSMUSG00000061028.7) protein_coding-TTS (ENSMUSG00000061028.7) 2595 ENSMUSG00000011267.8 ENSMUSG00000011267 ENSMUST00000208314 Zfp296 protein_coding Interval_125518 chr5 67916109 67916628 + 0 NA Intergenic Intergenic -25301 ENSMUSG00000094719.4 ENSMUSG00000094719 ENSMUST00000201798 Gm5108 protein_coding Interval_19672 chr10 107672919 107673347 + 0 NA intron (ENSMUSG00000035916.8, intron 14 of 20) protein_coding-intron (ENSMUSG00000035916.8, intron 14 of 44) 46894 ENSMUSG00000035916.8 ENSMUSG00000035916 ENSMUST00000218399 Ptprq protein_coding Interval_36490 chr12 46024290 46026303 + 0 NA Intergenic Intergenic 40953 ENSMUSG00000064800.1 ENSMUSG00000064800 ENSMUST00000082866 Gm24948 snoRNA Interval_85227 chr19 24016709 24018065 + 0 NA intron (ENSMUSG00000071604.5, intron 2 of 10) protein_coding-intron (ENSMUSG00000071604.5, intron 2 of 10) 12607 ENSMUSG00000117820.1 ENSMUSG00000117820 ENSMUST00000235965 Gm50305 processed_pseudogene Interval_171940 chr9 122767592 122768154 + 0 NA intron (ENSMUSG00000094985.2, intron 4 of 4) protein_coding-intron (ENSMUSG00000094985.2, intron 5 of 19) 17270 ENSMUSG00000094985.2 ENSMUSG00000094985 ENSMUST00000213519 Topaz1 protein_coding Interval_28223 chr11 74481577 74482160 + 0 NA intron (ENSMUSG00000038807.19, intron 4 of 25) protein_coding-intron (ENSMUSG00000038807.19, intron 4 of 25) 119799 ENSMUSG00000058275.3 ENSMUSG00000058275 ENSMUST00000077794 Olfr412 protein_coding Interval_56805 chr14 122202853 122203350 + 0 NA intron (ENSMUSG00000025545.10, intron 1 of 7) protein_coding-intron (ENSMUSG00000025545.10, intron 1 of 7) 30553 ENSMUSG00000100585.1 ENSMUSG00000100585 ENSMUST00000187423 1700108J01Rik antisense Interval_28188 chr11 73871538 73872014 + 0 NA Intergenic Intergenic -2116 ENSMUSG00000108735.1 ENSMUSG00000108735 ENSMUST00000206645 Gm44638 unprocessed_pseudogene Interval_154989 chr8 25531482 25532174 + 0 NA promoter-TSS (ENSMUSG00000031565.18) protein_coding-promoter-TSS (ENSMUSG00000031565.18) 21732 ENSMUSG00000086134.1 ENSMUSG00000086134 ENSMUST00000140451 Gm16159 antisense Interval_163887 chr9 27628462 27628658 + 0 NA Intergenic Intergenic 12375 ENSMUSG00000110851.1 ENSMUSG00000110851 ENSMUST00000213224 Gm48902 lincRNA Interval_71776 chr17 26011836 26012407 + 0 NA exon (ENSMUSG00000037098.18, exon 6 of 15) protein_coding-exon (ENSMUSG00000037098.18, exon 6 of 15) 6339 ENSMUSG00000037098.18 ENSMUSG00000037098 ENSMUST00000126306 Rab11fip3 protein_coding Interval_145369 chr7 34270379 34270745 + 0 NA intron (ENSMUSG00000066571.13, intron 2 of 13) protein_coding-intron (ENSMUSG00000066571.13, intron 1 of 12) -19207 ENSMUSG00000108737.1 ENSMUSG00000108737 ENSMUST00000207005 BC060293 TEC Interval_10601 chr1 172147561 172148901 + 0 NA promoter-TSS (ENSMUSG00000026554.15) protein_coding-promoter-TSS (ENSMUSG00000026554.15) 142 ENSMUSG00000026554.15 ENSMUSG00000026554 ENSMUST00000191891 Dcaf8 protein_coding Interval_103688 chr3 51646141 51646452 + 0 NA Intergenic Intergenic -9368 ENSMUSG00000104166.1 ENSMUSG00000104166 ENSMUST00000194675 Gm38247 processed_pseudogene Interval_73052 chr17 34417381 34417586 + 0 NA promoter-TSS (ENSMUSG00000057246.16) protein_coding-promoter-TSS (ENSMUSG00000057246.16) -15465 ENSMUSG00000082103.2 ENSMUSG00000082103 ENSMUST00000118085 Gm15320 transcribed_unprocessed_pseudogene Interval_72061 chr17 27789781 27789967 + 0 NA intron (ENSMUSG00000056692.13, intron 2 of 4) protein_coding-intron (ENSMUSG00000056692.13, intron 2 of 3) 5495 ENSMUSG00000080731.2 ENSMUSG00000080731 ENSMUST00000121414 Rps2-ps9 transcribed_processed_pseudogene Interval_127675 chr5 106537042 106537696 + 0 NA intron (ENSMUSG00000099061.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000099061.1, intron 1 of 2) 37346 ENSMUSG00000099061.1 ENSMUSG00000099061 ENSMUST00000124394 Gm28050 lincRNA Interval_9865 chr1 163443935 163444475 + 0 NA Intergenic Intergenic -40549 ENSMUSG00000040124.5 ENSMUSG00000040124 ENSMUST00000185299 Gorab protein_coding Interval_142891 chr6 146750489 146750721 + 0 NA intron (ENSMUSG00000001630.13, intron 1 of 1) protein_coding-intron (ENSMUSG00000001630.13, intron 1 of 13) -11976 ENSMUSG00000108108.1 ENSMUSG00000108108 ENSMUST00000203084 Gm44270 TEC Interval_47118 chr13 75914056 75914339 + 0 NA promoter-TSS (ENSMUSG00000021589.13) protein_coding-promoter-TSS (ENSMUSG00000021589.13) 9050 ENSMUSG00000070170.1 ENSMUSG00000070170 ENSMUST00000093660 Gm24163 snoRNA Interval_43888 chr13 37857397 37858737 + 0 NA exon (ENSMUSG00000039087.17, exon 1 of 4) protein_coding-exon (ENSMUSG00000039087.17, exon 1 of 4) -58277 ENSMUSG00000114370.1 ENSMUSG00000114370 ENSMUST00000224624 Gm46411 antisense Interval_152070 chr7 128766610 128766802 + 0 NA intron (ENSMUSG00000055319.8, intron 11 of 18) protein_coding-intron (ENSMUSG00000055319.8, intron 11 of 18) 8257 ENSMUSG00000077283.1 ENSMUSG00000077283 ENSMUST00000104095 n-R5s158 rRNA Interval_105831 chr3 89587591 89587805 + 0 NA intron (ENSMUSG00000000794.9, intron 2 of 7) protein_coding-intron (ENSMUSG00000000794.9, intron 2 of 7) -74820 ENSMUSG00000000794.9 ENSMUSG00000000794 ENSMUST00000124584 Kcnn3 protein_coding Interval_58936 chr15 40181929 40182388 + 0 NA Intergenic Intergenic 3941 ENSMUSG00000092855.1 ENSMUSG00000092855 ENSMUST00000175114 Gm25958 miRNA Interval_19240 chr10 95699358 95701640 + 0 NA Intergenic Intergenic 2963 ENSMUSG00000112025.1 ENSMUSG00000112025 ENSMUST00000218734 Gm47669 processed_pseudogene Interval_151783 chr7 126637039 126637616 + 0 NA Intergenic Intergenic -6466 ENSMUSG00000030717.9 ENSMUSG00000030717 ENSMUST00000191413 Nupr1 protein_coding Interval_10094 chr1 165757609 165757880 + 0 NA Intergenic Intergenic -6002 ENSMUSG00000040713.12 ENSMUSG00000040713 ENSMUST00000040298 Creg1 protein_coding Interval_101399 chr2 181050396 181050672 + 0 NA Intergenic Intergenic -22206 ENSMUSG00000027577.14 ENSMUSG00000027577 ENSMUST00000124400 Chrna4 protein_coding Interval_94960 chr2 102183549 102184118 + 0 NA intron (ENSMUSG00000048058.17, intron 1 of 5) protein_coding-intron (ENSMUSG00000048058.17, intron 1 of 5) 9543 ENSMUSG00000082328.1 ENSMUSG00000082328 ENSMUST00000119411 Gm13921 processed_pseudogene Interval_131285 chr5 136170166 136171359 + 0 NA promoter-TSS (ENSMUSG00000039747.11) protein_coding-promoter-TSS (ENSMUSG00000039747.11) -129 ENSMUSG00000039747.11 ENSMUSG00000039747 ENSMUST00000198268 Orai2 protein_coding Interval_139704 chr6 107676999 107678045 + 0 NA Intergenic Intergenic 49748 ENSMUSG00000107496.1 ENSMUSG00000107496 ENSMUST00000203905 4933431M02Rik lincRNA Interval_157004 chr8 64318618 64318846 + 0 NA Intergenic Intergenic 98368 ENSMUSG00000109579.1 ENSMUSG00000109579 ENSMUST00000211285 Gm35521 lincRNA Interval_147036 chr7 59003143 59003875 + 0 NA Intergenic Intergenic 33272 ENSMUSG00000109221.1 ENSMUSG00000109221 ENSMUST00000208899 Gm9375 processed_pseudogene Interval_98531 chr2 153038592 153038920 + 0 NA intron (ENSMUSG00000042631.7, intron 1 of 2) protein_coding-intron (ENSMUSG00000042631.7, intron 1 of 2) 6904 ENSMUSG00000042631.7 ENSMUSG00000042631 ENSMUST00000037235 Xkr7 protein_coding Interval_45949 chr13 59584575 59585886 + 0 NA promoter-TSS (ENSMUSG00000021555.15) protein_coding-promoter-TSS (ENSMUSG00000021555.15) -190 ENSMUSG00000021555.15 ENSMUSG00000021555 ENSMUST00000172118 Naa35 protein_coding Interval_85087 chr19 22560799 22560993 + 0 NA intron (ENSMUSG00000052387.16, intron 1 of 24) protein_coding-intron (ENSMUSG00000052387.16, intron 1 of 26) -112031 ENSMUSG00000098739.1 ENSMUSG00000098739 ENSMUST00000185015 Gm27151 antisense Interval_74092 chr17 46545877 46547176 + 0 NA promoter-TSS (ENSMUSG00000040327.16) protein_coding-promoter-TSS (ENSMUSG00000040327.16) 5267 ENSMUSG00000015605.6 ENSMUSG00000015605 ENSMUST00000233797 Srf protein_coding Interval_170331 chr9 107164997 107165500 + 0 NA TTS (ENSMUSG00000077494.1) snoRNA-TTS (ENSMUSG00000077494.1) 271 ENSMUSG00000077494.1 ENSMUSG00000077494 ENSMUST00000104306 Gm23595 snoRNA Interval_118929 chr4 134510822 134511519 + 0 NA TTS (ENSMUSG00000037348.15) protein_coding-TTS (ENSMUSG00000037348.15) 171 ENSMUSG00000078521.2 ENSMUSG00000078521 ENSMUST00000105866 Aunip protein_coding Interval_779 chr1 10970455 10971027 + 0 NA Intergenic Intergenic -22777 ENSMUSG00000048960.13 ENSMUSG00000048960 ENSMUST00000188154 Prex2 protein_coding Interval_170502 chr9 108331329 108331654 + 0 NA TTS (ENSMUSG00000007815.13) protein_coding-TTS (ENSMUSG00000007815.13) 245 ENSMUSG00000102554.1 ENSMUSG00000102554 ENSMUST00000191755 Gm37568 processed_pseudogene Interval_81769 chr18 64516143 64517251 + 0 NA promoter-TSS (ENSMUSG00000024587.10) protein_coding-promoter-TSS (ENSMUSG00000024587.10) -4820 ENSMUSG00000024587.10 ENSMUSG00000024587 ENSMUST00000237027 Nars protein_coding Interval_62977 chr15 98440543 98440840 + 0 NA Intergenic Intergenic 9466 ENSMUSG00000063780.7 ENSMUSG00000063780 ENSMUST00000075851 Olfr282 protein_coding Interval_171194 chr9 115114158 115114609 + 0 NA intron (ENSMUSG00000040875.12, intron 4 of 4) protein_coding-intron (ENSMUSG00000040875.12, intron 2 of 9) 71675 ENSMUSG00000098127.1 ENSMUSG00000098127 ENSMUST00000183244 Gm4665 antisense Interval_6315 chr1 105813358 105814044 + 0 NA exon (ENSMUSG00000026321.7, exon 4 of 10) protein_coding-exon (ENSMUSG00000026321.7, exon 4 of 10) 32951 ENSMUSG00000026321.7 ENSMUSG00000026321 ENSMUST00000187658 Tnfrsf11a protein_coding Interval_163385 chr9 21195216 21197100 + 0 NA promoter-TSS (ENSMUSG00000032177.17) protein_coding-promoter-TSS (ENSMUSG00000032177.17) 12057 ENSMUSG00000032177.17 ENSMUSG00000032177 ENSMUST00000003395 Pde4a protein_coding Interval_152799 chr7 137765041 137765671 + 0 NA Intergenic Intergenic 31090 ENSMUSG00000110090.1 ENSMUSG00000110090 ENSMUST00000209434 Gm45682 lincRNA Interval_172912 chrX 53283070 53284208 + 0 NA intron (ENSMUSG00000036013.12, intron 3 of 9) protein_coding-intron (ENSMUSG00000036013.12, intron 3 of 7) 10206 ENSMUSG00000036013.12 ENSMUSG00000036013 ENSMUST00000186314 Fam122c protein_coding Interval_37245 chr12 62790079 62791202 + 0 NA Intergenic Intergenic 63423 ENSMUSG00000113590.1 ENSMUSG00000113590 ENSMUST00000223154 Gm48378 processed_pseudogene Interval_72650 chr17 31307119 31309524 + 0 NA TTS (ENSMUSG00000024036.16) protein_coding-TTS (ENSMUSG00000024036.16) -11632 ENSMUSG00000118295.1 ENSMUSG00000118295 ENSMUST00000236752 Gm8437 transcribed_processed_pseudogene Interval_120238 chr4 144738551 144738810 + 0 NA Intergenic Intergenic -23375 ENSMUSG00000041735.8 ENSMUSG00000041735 ENSMUST00000036876 AAdacl4fm3 protein_coding Interval_138129 chr6 85361007 85361378 + 0 NA intron (ENSMUSG00000051343.11, intron 1 of 5) protein_coding-intron (ENSMUSG00000051343.11, intron 1 of 4) -19555 ENSMUSG00000051343.11 ENSMUSG00000051343 ENSMUST00000204504 Rab11fip5 protein_coding Interval_94207 chr2 85089994 85090248 + 0 NA Intergenic Intergenic -3660 ENSMUSG00000086969.1 ENSMUSG00000086969 ENSMUST00000135659 4930443O20Rik processed_transcript Interval_68030 chr16 64241174 64241474 + 0 NA Intergenic Intergenic -286194 ENSMUSG00000116722.1 ENSMUSG00000116722 ENSMUST00000231945 Gm49627 processed_pseudogene Interval_101709 chr3 9066914 9067173 + 0 NA intron (ENSMUSG00000103116.1, intron 2 of 2) lincRNA-intron (ENSMUSG00000103116.1, intron 2 of 2) 5079 ENSMUSG00000103116.1 ENSMUSG00000103116 ENSMUST00000194792 4930539M17Rik lincRNA Interval_45730 chr13 57330084 57331517 + 0 NA Intergenic Intergenic 54122 ENSMUSG00000114411.1 ENSMUSG00000114411 ENSMUST00000224461 Gm48176 processed_pseudogene Interval_165888 chr9 54286159 54287201 + 0 NA exon (ENSMUSG00000046167.5, exon 1 of 10) protein_coding-exon (ENSMUSG00000046167.5, exon 1 of 10) 194 ENSMUSG00000046167.5 ENSMUSG00000046167 ENSMUST00000056740 Gldn protein_coding Interval_45635 chr13 56410624 56410866 + 0 NA Intergenic Intergenic -15849 ENSMUSG00000110477.1 ENSMUSG00000110477 ENSMUST00000212844 Gm3045 protein_coding Interval_2505 chr1 39843233 39843477 + 0 NA intron (ENSMUSG00000101634.6, intron 2 of 2) lincRNA-intron (ENSMUSG00000101634.6, intron 2 of 2) 3975 ENSMUSG00000101634.6 ENSMUSG00000101634 ENSMUST00000186683 1700066B17Rik lincRNA Interval_30262 chr11 92318350 92318865 + 0 NA Intergenic Intergenic -294194 ENSMUSG00000093113.1 ENSMUSG00000093113 ENSMUST00000175372 Gm22702 miRNA Interval_165836 chr9 53673451 53673822 + 0 NA intron (ENSMUSG00000086914.1, intron 1 of 1) antisense-intron (ENSMUSG00000086914.1, intron 1 of 1) -6129 ENSMUSG00000032030.16 ENSMUSG00000032030 ENSMUST00000133872 Cul5 protein_coding Interval_121956 chr5 12507694 12508210 + 0 NA intron (ENSMUSG00000040254.11, intron 6 of 16) protein_coding-intron (ENSMUSG00000040254.11, intron 6 of 17) -28324 ENSMUSG00000105854.1 ENSMUSG00000105854 ENSMUST00000197212 Gm8925 processed_pseudogene Interval_160599 chr8 110940965 110941705 + 0 NA intron (ENSMUSG00000031749.12, intron 1 of 1) protein_coding-intron (ENSMUSG00000031749.12, intron 1 of 6) 9414 ENSMUSG00000031749.12 ENSMUSG00000031749 ENSMUST00000138332 St3gal2 protein_coding Interval_91402 chr2 38567258 38567540 + 0 NA intron (ENSMUSG00000026749.11, intron 5 of 9) protein_coding-intron (ENSMUSG00000026749.11, intron 5 of 9) -1045 ENSMUSG00000107535.1 ENSMUSG00000107535 ENSMUST00000203964 Gm44183 TEC Interval_89919 chr2 26485894 26486155 + 0 NA intron (ENSMUSG00000026923.15, intron 2 of 33) protein_coding-intron (ENSMUSG00000026923.15, intron 2 of 33) -15905 ENSMUSG00000098548.1 ENSMUSG00000098548 ENSMUST00000183922 Mir6996 miRNA Interval_97573 chr2 140000419 140000615 + 0 NA intron (ENSMUSG00000039033.11, intron 2 of 4) protein_coding-intron (ENSMUSG00000039033.11, intron 5 of 13) 41697 ENSMUSG00000039033.11 ENSMUSG00000039033 ENSMUST00000124949 Tasp1 protein_coding Interval_143210 chr7 4513345 4513686 + 0 NA TTS (ENSMUSG00000064179.13) protein_coding-TTS (ENSMUSG00000064179.13) 2460 ENSMUSG00000064179.13 ENSMUSG00000064179 ENSMUST00000163560 Tnnt1 protein_coding Interval_139465 chr6 100348283 100349337 + 0 NA Intergenic Intergenic -62062 ENSMUSG00000072872.3 ENSMUSG00000072872 ENSMUST00000205164 Rybp protein_coding Interval_44834 chr13 48981425 48982697 + 0 NA Intergenic Intergenic -14044 ENSMUSG00000038014.7 ENSMUSG00000038014 ENSMUST00000060805 Fam120a protein_coding Interval_106280 chr3 95106148 95107231 + 0 NA promoter-TSS (ENSMUSG00000028126.16) protein_coding-promoter-TSS (ENSMUSG00000028126.16) 7189 ENSMUSG00000064590.1 ENSMUSG00000064590 ENSMUST00000082656 Gm22301 snRNA Interval_2918 chr1 49934220 49935222 + 0 NA Intergenic Intergenic -122061 ENSMUSG00000101760.1 ENSMUSG00000101760 ENSMUST00000190905 Gm8384 processed_pseudogene Interval_48473 chr13 99304351 99305265 + 0 NA Intergenic Intergenic 39897 ENSMUSG00000021650.7 ENSMUSG00000021650 ENSMUST00000022153 Ptcd2 protein_coding Interval_134098 chr6 19926319 19927697 + 0 NA Intergenic Intergenic 138955 ENSMUSG00000107067.1 ENSMUSG00000107067 ENSMUST00000201774 Gm42581 processed_pseudogene Interval_152512 chr7 133703623 133704441 + 0 NA intron (ENSMUSG00000030979.13, intron 1 of 2) protein_coding-intron (ENSMUSG00000030979.13, intron 1 of 9) -1494 ENSMUSG00000030979.13 ENSMUSG00000030979 ENSMUST00000151348 Uros protein_coding Interval_85124 chr19 23035632 23037935 + 0 NA TTS (ENSMUSG00000097930.2) lincRNA-TTS (ENSMUSG00000097930.2) -24671 ENSMUSG00000118155.1 ENSMUSG00000118155 ENSMUST00000235686 Gm50136 lincRNA Interval_70783 chr17 14475529 14476091 + 0 NA intron (ENSMUSG00000116801.1, intron 1 of 4) lincRNA-intron (ENSMUSG00000116801.1, intron 1 of 4) 26239 ENSMUSG00000116801.1 ENSMUSG00000116801 ENSMUST00000232609 Gm38551 lincRNA Interval_122766 chr5 25251300 25251548 + 0 NA intron (ENSMUSG00000038072.14, intron 4 of 11) protein_coding-intron (ENSMUSG00000038072.14, intron 4 of 11) -28271 ENSMUSG00000054116.1 ENSMUSG00000054116 ENSMUST00000066954 E130116L18Rik protein_coding Interval_138062 chr6 84923129 84924238 + 0 NA intron (ENSMUSG00000108012.1, intron 3 of 3) protein_coding-intron (ENSMUSG00000033769.16, intron 6 of 16) 2560 ENSMUSG00000108012.1 ENSMUSG00000108012 ENSMUST00000204154 Gm44012 antisense Interval_66857 chr16 38159258 38159538 + 0 NA intron (ENSMUSG00000022812.14, intron 2 of 5) protein_coding-intron (ENSMUSG00000022812.14, intron 2 of 10) 1390 ENSMUSG00000105863.1 ENSMUSG00000105863 ENSMUST00000198387 Gm25617 snoRNA Interval_141861 chr6 134972397 134972621 + 0 NA Intergenic Intergenic -9209 ENSMUSG00000090698.2 ENSMUSG00000090698 ENSMUST00000167323 Apold1 protein_coding Interval_161031 chr8 117049570 117050040 + 0 NA intron (ENSMUSG00000034416.18, intron 17 of 42) protein_coding-intron (ENSMUSG00000034416.18, intron 17 of 42) 13308 ENSMUSG00000085688.1 ENSMUSG00000085688 ENSMUST00000153724 Gm15395 antisense Interval_64943 chr16 17422861 17423694 + 0 NA intron (ENSMUSG00000022765.10, intron 3 of 4) protein_coding-intron (ENSMUSG00000022765.10, intron 3 of 4) 17291 ENSMUSG00000022765.10 ENSMUSG00000022765 ENSMUST00000023449 Snap29 protein_coding Interval_24493 chr11 33708955 33709278 + 0 NA intron (ENSMUSG00000087328.1, intron 1 of 1) protein_coding-intron (ENSMUSG00000053519.17, intron 1 of 7) 3566 ENSMUSG00000087328.1 ENSMUSG00000087328 ENSMUST00000125068 Gm12120 antisense Interval_146021 chr7 43258956 43259482 + 0 NA Intergenic Intergenic 45180 ENSMUSG00000074887.4 ENSMUSG00000074887 ENSMUST00000163106 EU599041 lincRNA Interval_74800 chr17 56611689 56615741 + 0 NA TTS (ENSMUSG00000041168.10) protein_coding-TTS (ENSMUSG00000041168.10) 299 ENSMUSG00000057863.6 ENSMUSG00000057863 ENSMUST00000080492 Rpl36 protein_coding Interval_61258 chr15 80294976 80295263 + 0 NA intron (ENSMUSG00000022416.15, intron 1 of 36) protein_coding-intron (ENSMUSG00000022416.15, intron 1 of 36) -30873 ENSMUSG00000051518.8 ENSMUSG00000051518 ENSMUST00000229962 Rps19bp1 protein_coding Interval_31582 chr11 101513565 101514608 + 0 NA intron (ENSMUSG00000017146.12, intron 2 of 2) protein_coding-intron (ENSMUSG00000017146.12, intron 12 of 22) 10772 ENSMUSG00000017146.12 ENSMUSG00000017146 ENSMUST00000190862 Brca1 protein_coding Interval_30251 chr11 91965191 91965538 + 0 NA Intergenic Intergenic 59049 ENSMUSG00000093113.1 ENSMUSG00000093113 ENSMUST00000175372 Gm22702 miRNA Interval_109556 chr3 144434329 144436169 + 0 NA intron (ENSMUSG00000040151.9, intron 6 of 6) protein_coding-intron (ENSMUSG00000040151.9, intron 6 of 6) -7577 ENSMUSG00000106416.1 ENSMUSG00000106416 ENSMUST00000198953 Gm5857 processed_pseudogene Interval_94309 chr2 88063281 88064120 + 0 NA Intergenic Intergenic 8130 ENSMUSG00000075137.4 ENSMUSG00000075137 ENSMUST00000099835 Olfr1163 protein_coding Interval_109444 chr3 142476100 142476448 + 0 NA Intergenic Intergenic -26522 ENSMUSG00000105504.4 ENSMUSG00000105504 ENSMUST00000199578 Gbp5 protein_coding Interval_165394 chr9 47350827 47351057 + 0 NA intron (ENSMUSG00000109844.2, intron 2 of 6) lincRNA-intron (ENSMUSG00000109844.2, intron 2 of 5) -80199 ENSMUSG00000109844.2 ENSMUSG00000109844 ENSMUST00000209906 Gm31816 lincRNA Interval_77939 chr18 5934313 5934538 + 0 NA Intergenic Intergenic -10758 ENSMUSG00000117508.1 ENSMUSG00000117508 ENSMUST00000234953 Gm34804 lincRNA Interval_106294 chr3 95207189 95207430 + 0 NA intron (ENSMUSG00000038766.16, intron 2 of 4) protein_coding-intron (ENSMUSG00000038766.16, intron 3 of 8) -10148 ENSMUSG00000097167.1 ENSMUSG00000097167 ENSMUST00000181819 Gm16740 antisense Interval_6512 chr1 113852723 113852947 + 0 NA Intergenic Intergenic 111299 ENSMUSG00000097648.1 ENSMUSG00000097648 ENSMUST00000180837 9330185C12Rik lincRNA Interval_111416 chr4 21399663 21400183 + 0 NA Intergenic Intergenic 71403 ENSMUSG00000089322.1 ENSMUSG00000089322 ENSMUST00000158697 Gm25977 snoRNA Interval_86381 chr19 39744300 39744728 + 0 NA Intergenic Intergenic -3460 ENSMUSG00000074882.3 ENSMUSG00000074882 ENSMUST00000099472 Cyp2c68 protein_coding Interval_87780 chr19 55819312 55819811 + 0 NA intron (ENSMUSG00000024985.20, intron 5 of 14) protein_coding-intron (ENSMUSG00000024985.20, intron 4 of 11) -22111 ENSMUSG00000099746.1 ENSMUSG00000099746 ENSMUST00000190974 Ppnr sense_intronic Interval_70871 chr17 15499554 15500350 + 0 NA promoter-TSS (ENSMUSG00000014767.17) protein_coding-promoter-TSS (ENSMUSG00000014767.17) -201 ENSMUSG00000014769.10 ENSMUSG00000014769 ENSMUST00000231341 Psmb1 protein_coding Interval_10930 chr1 177129046 177129235 + 0 NA intron (ENSMUSG00000019699.16, intron 2 of 12) protein_coding-intron (ENSMUSG00000019699.16, intron 2 of 12) 6313 ENSMUSG00000103163.1 ENSMUSG00000103163 ENSMUST00000194121 Gm38146 TEC Interval_158396 chr8 83408543 83409288 + 0 NA intron (ENSMUSG00000002190.13, intron 6 of 14) protein_coding-intron (ENSMUSG00000002190.13, intron 6 of 14) 19037 ENSMUSG00000002190.13 ENSMUSG00000002190 ENSMUST00000109831 Clgn protein_coding Interval_57643 chr15 13121732 13122157 + 0 NA intron (ENSMUSG00000039385.5, intron 1 of 3) protein_coding-intron (ENSMUSG00000039385.5, intron 1 of 11) 51731 ENSMUSG00000039385.5 ENSMUSG00000039385 ENSMUST00000226917 Cdh6 protein_coding Interval_38639 chr12 80736689 80737133 + 0 NA Intergenic Intergenic 15179 ENSMUSG00000066438.6 ENSMUSG00000066438 ENSMUST00000153762 Plekhd1 protein_coding Interval_6036 chr1 94287277 94287674 + 0 NA Intergenic Intergenic 83058 ENSMUSG00000100990.1 ENSMUSG00000100990 ENSMUST00000190284 Gm7891 processed_pseudogene Interval_108828 chr3 132070171 132071397 + 0 NA Intergenic Intergenic 11608 ENSMUSG00000064992.1 ENSMUSG00000064992 ENSMUST00000083058 Gm22421 snRNA Interval_74966 chr17 58429438 58430496 + 0 NA Intergenic Intergenic -32358 ENSMUSG00000117281.1 ENSMUSG00000117281 ENSMUST00000233462 Gm49848 processed_pseudogene Interval_51502 chr14 28769439 28769657 + 0 NA Intergenic Intergenic 28873 ENSMUSG00000114577.1 ENSMUSG00000114577 ENSMUST00000225272 Gm35217 lincRNA Interval_124667 chr5 52997075 52997281 + 0 NA Intergenic Intergenic -4886 ENSMUSG00000106352.4 ENSMUSG00000106352 ENSMUST00000196858 5033403H07Rik processed_transcript Interval_54421 chr14 69204233 69204748 + 0 NA Intergenic Intergenic 8639 ENSMUSG00000102999.1 ENSMUSG00000102999 ENSMUST00000194515 Gm37762 TEC Interval_167147 chr9 65640850 65641846 + 0 NA intron (ENSMUSG00000032387.15, intron 1 of 4) protein_coding-intron (ENSMUSG00000032387.15, intron 1 of 7) -17629 ENSMUSG00000032387.15 ENSMUSG00000032387 ENSMUST00000216769 Rbpms2 protein_coding Interval_91483 chr2 39212036 39213495 + 0 NA intron (ENSMUSG00000026753.5, intron 1 of 5) protein_coding-intron (ENSMUSG00000026753.5, intron 1 of 6) 4529 ENSMUSG00000083157.1 ENSMUSG00000083157 ENSMUST00000121167 Gm13511 processed_pseudogene Interval_7602 chr1 132450475 132451323 + 0 NA intron (ENSMUSG00000042046.15, intron 3 of 11) protein_coding-intron (ENSMUSG00000042046.15, intron 3 of 12) -11510 ENSMUSG00000042046.15 ENSMUSG00000042046 ENSMUST00000191494 Dstyk protein_coding Interval_153523 chr8 3100244 3101006 + 0 NA Intergenic Intergenic -1119 ENSMUSG00000080366.1 ENSMUSG00000080366 ENSMUST00000116716 Gm25775 miRNA Interval_109354 chr3 139598204 139599249 + 0 NA intron (ENSMUSG00000047940.13, intron 12 of 13) protein_coding-intron (ENSMUSG00000047940.13, intron 12 of 13) -50653 ENSMUSG00000106574.1 ENSMUSG00000106574 ENSMUST00000199447 Gm2451 processed_pseudogene Interval_152202 chr7 130624772 130625479 + 0 NA exon (ENSMUSG00000030852.18, exon 3 of 22) protein_coding-exon (ENSMUSG00000030852.18, exon 3 of 22) 29267 ENSMUSG00000109225.1 ENSMUSG00000109225 ENSMUST00000207466 4930513N20Rik TEC Interval_115183 chr4 93693327 93693823 + 0 NA Intergenic Intergenic -22505 ENSMUSG00000084833.1 ENSMUSG00000084833 ENSMUST00000137509 Gm12649 lincRNA Interval_140437 chr6 118083579 118084007 + 0 NA intron (ENSMUSG00000030134.11, intron 3 of 12) protein_coding-intron (ENSMUSG00000030134.11, intron 3 of 12) -1399 ENSMUSG00000098583.1 ENSMUSG00000098583 ENSMUST00000184597 Mir7044 miRNA Interval_65476 chr16 22593586 22594143 + 0 NA intron (ENSMUSG00000022861.17, intron 5 of 19) protein_coding-intron (ENSMUSG00000022861.17, intron 5 of 23) -1165 ENSMUSG00000084511.1 ENSMUSG00000084511 ENSMUST00000122562 Gm22481 misc_RNA Interval_99844 chr2 165266820 165267367 + 0 NA Intergenic Intergenic 3083 ENSMUSG00000087800.1 ENSMUSG00000087800 ENSMUST00000157175 Gm25569 snoRNA Interval_11174 chr1 179853419 179853752 + 0 NA Intergenic Intergenic 50209 ENSMUSG00000073486.2 ENSMUSG00000073486 ENSMUST00000097454 Gm10518 antisense Interval_126387 chr5 87798213 87798391 + 0 NA Intergenic Intergenic -13045 ENSMUSG00000061388.11 ENSMUSG00000061388 ENSMUST00000200098 Csn1s2b protein_coding Interval_102924 chr3 32837436 32838905 + 0 NA intron (ENSMUSG00000056900.13, intron 2 of 20) protein_coding-intron (ENSMUSG00000056900.13, intron 2 of 20) 20459 ENSMUSG00000056900.13 ENSMUSG00000056900 ENSMUST00000156769 Usp13 protein_coding Interval_19076 chr10 94262530 94263887 + 0 NA Intergenic Intergenic 35495 ENSMUSG00000053420.6 ENSMUSG00000053420 ENSMUST00000065826 Gm4792 protein_coding Interval_101772 chr3 9499951 9501652 + 0 NA TTS (ENSMUSG00000103485.1) TEC-TTS (ENSMUSG00000103485.1) 4633 ENSMUSG00000103485.1 ENSMUSG00000103485 ENSMUST00000192900 Gm38001 TEC Interval_153557 chr8 3408747 3409085 + 0 NA intron (ENSMUSG00000004568.13, intron 1 of 3) protein_coding-intron (ENSMUSG00000004568.13, intron 1 of 19) -49123 ENSMUSG00000108955.1 ENSMUSG00000108955 ENSMUST00000207266 Gm44775 TEC Interval_149926 chr7 102694813 102696141 + 0 NA promoter-TSS (ENSMUSG00000073967.3) protein_coding-promoter-TSS (ENSMUSG00000073967.3) -433 ENSMUSG00000073967.3 ENSMUSG00000073967 ENSMUST00000098218 Olfr557 protein_coding Interval_56920 chr14 123352583 123353594 + 0 NA intron (ENSMUSG00000000197.8, intron 16 of 29) protein_coding-intron (ENSMUSG00000000197.8, intron 17 of 43) 36282 ENSMUSG00000115674.1 ENSMUSG00000115674 ENSMUST00000227636 Gm49297 TEC Interval_161146 chr8 117785795 117786131 + 0 NA Intergenic Intergenic 7254 ENSMUSG00000031843.2 ENSMUSG00000031843 ENSMUST00000211818 Mphosph6 protein_coding Interval_85608 chr19 29053196 29053445 + 0 NA Intergenic Intergenic 7075 ENSMUSG00000100075.1 ENSMUSG00000100075 ENSMUST00000187897 1700018L02Rik antisense Interval_57243 chr15 8097721 8099500 + 0 NA intron (ENSMUSG00000039828.7, intron 2 of 3) protein_coding-intron (ENSMUSG00000039828.7, intron 2 of 17) 599 ENSMUSG00000039828.7 ENSMUSG00000039828 ENSMUST00000227371 Wdr70 protein_coding Interval_137031 chr6 66692464 66692707 + 0 NA Intergenic Intergenic -6679 ENSMUSG00000060699.2 ENSMUSG00000060699 ENSMUST00000071414 Vmn1r35 protein_coding Interval_151949 chr7 127717077 127717474 + 0 NA TTS (ENSMUSG00000060034.5) protein_coding-TTS (ENSMUSG00000060034.5) 4338 ENSMUSG00000042340.6 ENSMUSG00000042340 ENSMUST00000205655 Ctf1 protein_coding Interval_143862 chr7 16809867 16811678 + 0 NA TTS (ENSMUSG00000048920.8) protein_coding-TTS (ENSMUSG00000048920.8) 4749 ENSMUSG00000048920.8 ENSMUSG00000048920 ENSMUST00000205368 Fkrp protein_coding Interval_143390 chr7 6321898 6322558 + 0 NA TTS (ENSMUSG00000030443.16) protein_coding-TTS (ENSMUSG00000030443.16) 7035 ENSMUSG00000030443.16 ENSMUSG00000030443 ENSMUST00000127658 Zfp583 protein_coding Interval_36670 chr12 51896041 51896240 + 0 NA intron (ENSMUSG00000035181.6, intron 15 of 24) protein_coding-intron (ENSMUSG00000035181.6, intron 26 of 35) 43810 ENSMUSG00000035181.6 ENSMUSG00000035181 ENSMUST00000219277 Heatr5a protein_coding Interval_30069 chr11 88989486 88990246 + 0 NA intron (ENSMUSG00000033983.14, intron 1 of 1) protein_coding-intron (ENSMUSG00000033983.14, intron 6 of 6) 2287 ENSMUSG00000033983.14 ENSMUSG00000033983 ENSMUST00000140549 Coil protein_coding Interval_73655 chr17 42475862 42476143 + 0 NA intron (ENSMUSG00000042256.5, intron 2 of 2) protein_coding-intron (ENSMUSG00000042256.5, intron 3 of 3) 135393 ENSMUSG00000043972.8 ENSMUSG00000043972 ENSMUST00000068355 Opn5 protein_coding Interval_80875 chr18 49793676 49794356 + 0 NA Intergenic Intergenic 23942 ENSMUSG00000100134.1 ENSMUSG00000100134 ENSMUST00000186872 1700065O20Rik lincRNA Interval_33836 chr11 118890842 118891887 + 0 NA intron (ENSMUSG00000025576.17, intron 1 of 13) protein_coding-intron (ENSMUSG00000025576.17, intron 1 of 14) -24144 ENSMUSG00000084887.1 ENSMUSG00000084887 ENSMUST00000127327 Gm11749 sense_intronic Interval_20158 chr10 115329557 115329760 + 0 NA Intergenic Intergenic 14012 ENSMUSG00000112301.1 ENSMUSG00000112301 ENSMUST00000218348 Gm10752 TEC Interval_121654 chr5 4393351 4393567 + 0 NA Intergenic Intergenic 201092 ENSMUSG00000053178.5 ENSMUSG00000053178 ENSMUST00000177258 Mterf1b protein_coding Interval_109159 chr3 137113326 137113796 + 0 NA Intergenic Intergenic 45669 ENSMUSG00000065906.1 ENSMUSG00000065906 ENSMUST00000083972 Gm26107 snRNA Interval_85886 chr19 32749274 32750228 + 0 NA Intergenic Intergenic -54881 ENSMUSG00000013662.6 ENSMUSG00000013662 ENSMUST00000237933 Atad1 protein_coding Interval_59946 chr15 62144849 62145431 + 0 NA intron (ENSMUSG00000097039.8, intron 2 of 6) lincRNA-intron (ENSMUSG00000097039.8, intron 2 of 8) -30282 ENSMUSG00000098595.1 ENSMUSG00000098595 ENSMUST00000184054 Gm27957 misc_RNA Interval_13828 chr10 23348441 23351070 + 0 NA intron (ENSMUSG00000010461.15, intron 2 of 19) protein_coding-intron (ENSMUSG00000010461.15, intron 1 of 18) 1031 ENSMUSG00000010461.15 ENSMUSG00000010461 ENSMUST00000218956 Eya4 protein_coding Interval_108035 chr3 120823305 120824324 + 0 NA intron (ENSMUSG00000098097.7, intron 1 of 11) lincRNA-intron (ENSMUSG00000098097.7, intron 1 of 3) 62918 ENSMUSG00000098097.7 ENSMUSG00000098097 ENSMUST00000182099 6530403H02Rik lincRNA Interval_104280 chr3 62573349 62574047 + 0 NA intron (ENSMUSG00000043441.5, intron 3 of 3) protein_coding-intron (ENSMUSG00000043441.5, intron 3 of 3) 29076 ENSMUSG00000043441.5 ENSMUSG00000043441 ENSMUST00000149007 Gpr149 protein_coding Interval_40234 chr12 102673492 102673758 + 0 NA exon (ENSMUSG00000096751.3, exon 3 of 3) processed_transcript-exon (ENSMUSG00000096751.3, exon 3 of 3) 11395 ENSMUSG00000089324.1 ENSMUSG00000089324 ENSMUST00000158699 Mir1936 miRNA Interval_123247 chr5 30881729 30882063 + 0 NA Intergenic Intergenic -7060 ENSMUSG00000029165.17 ENSMUSG00000029165 ENSMUST00000201014 Agbl5 protein_coding Interval_154999 chr8 25577681 25579570 + 0 NA exon (ENSMUSG00000037363.9, exon 11 of 11) protein_coding-exon (ENSMUSG00000037363.9, exon 11 of 11) 11759 ENSMUSG00000031565.18 ENSMUSG00000031565 ENSMUST00000133936 Fgfr1 protein_coding Interval_75881 chr17 72603008 72605082 + 0 NA promoter-TSS (ENSMUSG00000055471.7) protein_coding-promoter-TSS (ENSMUSG00000055471.7) 262 ENSMUSG00000055471.7 ENSMUSG00000055471 ENSMUST00000232804 Alk protein_coding Interval_3351 chr1 57351847 57352424 + 0 NA Intergenic Intergenic 25409 ENSMUSG00000097519.2 ENSMUSG00000097519 ENSMUST00000181949 4930558J18Rik lincRNA Interval_170860 chr9 111284652 111285795 + 0 NA Intergenic Intergenic 11121 ENSMUSG00000046785.8 ENSMUSG00000046785 ENSMUST00000200053 Epm2aip1 protein_coding Interval_89494 chr2 21046643 21046939 + 0 NA intron (ENSMUSG00000086821.3, intron 7 of 8) unprocessed_pseudogene-intron (ENSMUSG00000086821.3, intron 7 of 8) -50308 ENSMUSG00000087219.1 ENSMUSG00000087219 ENSMUST00000128743 Gm13376 lincRNA Interval_128306 chr5 112448348 112449745 + 0 NA promoter-TSS (ENSMUSG00000072722.2) protein_coding-promoter-TSS (ENSMUSG00000072722.2) -380 ENSMUSG00000072722.2 ENSMUSG00000072722 ENSMUST00000100882 Gm6588 protein_coding Interval_112326 chr4 40511063 40511481 + 0 NA intron (ENSMUSG00000086355.1, intron 3 of 6) lincRNA-intron (ENSMUSG00000086355.1, intron 3 of 6) 14276 ENSMUSG00000086355.1 ENSMUSG00000086355 ENSMUST00000146043 4933428C19Rik lincRNA Interval_12128 chr1 189921058 189922706 + 0 NA intron (ENSMUSG00000026603.13, intron 1 of 9) protein_coding-intron (ENSMUSG00000026603.13, intron 1 of 11) 371 ENSMUSG00000026603.13 ENSMUSG00000026603 ENSMUST00000144452 Smyd2 protein_coding Interval_21898 chr11 5057865 5058550 + 0 NA promoter-TSS (ENSMUSG00000034209.4) protein_coding-promoter-TSS (ENSMUSG00000034209.4) -759 ENSMUSG00000034209.4 ENSMUSG00000034209 ENSMUST00000126974 Rasl10a protein_coding Interval_166613 chr9 61315730 61316660 + 0 NA Intergenic Intergenic -22386 ENSMUSG00000111658.1 ENSMUSG00000111658 ENSMUST00000213377 B930092H01Rik lincRNA Interval_101970 chr3 13869907 13870601 + 0 NA intron (ENSMUSG00000039717.16, intron 2 of 5) protein_coding-intron (ENSMUSG00000039717.16, intron 2 of 8) 24568 ENSMUSG00000088546.1 ENSMUSG00000088546 ENSMUST00000157921 Gm25981 misc_RNA Interval_43855 chr13 37616322 37616608 + 0 NA TTS (ENSMUSG00000114404.1) lincRNA-TTS (ENSMUSG00000114404.1) 11138 ENSMUSG00000114404.1 ENSMUSG00000114404 ENSMUST00000225437 Gm40915 lincRNA Interval_59436 chr15 53145271 53146448 + 0 NA intron (ENSMUSG00000061731.9, intron 1 of 10) protein_coding-intron (ENSMUSG00000061731.9, intron 1 of 10) -37991 ENSMUSG00000061731.9 ENSMUSG00000061731 ENSMUST00000140798 Ext1 protein_coding Interval_40637 chr12 106185685 106186727 + 0 NA Intergenic Intergenic -34869 ENSMUSG00000077640.1 ENSMUSG00000077640 ENSMUST00000104452 Gm24986 snoRNA Interval_48966 chr13 106281120 106281351 + 0 NA Intergenic Intergenic -83464 ENSMUSG00000108515.1 ENSMUSG00000108515 ENSMUST00000205589 Olfr717-ps1 unprocessed_pseudogene Interval_24735 chr11 36401632 36401847 + 0 NA intron (ENSMUSG00000049336.16, intron 2 of 28) protein_coding-intron (ENSMUSG00000049336.16, intron 2 of 28) 123698 ENSMUSG00000086375.1 ENSMUSG00000086375 ENSMUST00000123278 Gm12127 antisense Interval_160172 chr8 106924903 106926214 + 0 NA Intergenic Intergenic 2855 ENSMUSG00000074108.1 ENSMUSG00000074108 ENSMUST00000098432 Rpl10-ps2 processed_pseudogene Interval_98455 chr2 152500712 152501313 + 0 NA Intergenic Intergenic 10680 ENSMUSG00000074680.1 ENSMUSG00000074680 ENSMUST00000099205 Defb26 protein_coding Interval_54088 chr14 65149457 65150436 + 0 NA promoter-TSS (ENSMUSG00000021978.9) protein_coding-promoter-TSS (ENSMUSG00000021978.9) -16968 ENSMUSG00000114944.1 ENSMUSG00000114944 ENSMUST00000224037 Gm48299 processed_pseudogene Interval_14432 chr10 33642708 33643093 + 0 NA intron (ENSMUSG00000090087.1, intron 1 of 4) antisense-intron (ENSMUSG00000090087.1, intron 1 of 4) -18281 ENSMUSG00000019785.14 ENSMUSG00000019785 ENSMUST00000160299 Clvs2 protein_coding Interval_55696 chr14 99083050 99083593 + 0 NA intron (ENSMUSG00000033166.11, intron 13 of 19) protein_coding-intron (ENSMUSG00000033166.11, intron 14 of 20) -4638 ENSMUSG00000033166.11 ENSMUSG00000033166 ENSMUST00000227001 Dis3 protein_coding Interval_167475 chr9 69713890 69714689 + 0 NA Intergenic Intergenic 46651 ENSMUSG00000059246.4 ENSMUSG00000059246 ENSMUST00000071281 Foxb1 protein_coding Interval_55892 chr14 101840085 101840575 + 0 NA promoter-TSS (ENSMUSG00000033060.16) protein_coding-promoter-TSS (ENSMUSG00000033060.16) -177 ENSMUSG00000033060.16 ENSMUSG00000033060 ENSMUST00000160038 Lmo7 protein_coding Interval_24866 chr11 40573213 40574118 + 0 NA Intergenic Intergenic -3140 ENSMUSG00000082390.1 ENSMUSG00000082390 ENSMUST00000120460 Gm12136 processed_pseudogene Interval_52894 chr14 51900708 51901665 + 0 NA Intergenic Intergenic 8297 ENSMUSG00000072572.9 ENSMUSG00000072572 ENSMUST00000047726 Slc39a2 protein_coding Interval_86610 chr19 42034104 42036288 + 0 NA promoter-TSS (ENSMUSG00000025172.3) protein_coding-promoter-TSS (ENSMUSG00000025172.3) -804 ENSMUSG00000025172.3 ENSMUSG00000025172 ENSMUST00000026172 Ankrd2 protein_coding Interval_143706 chr7 15848351 15851311 + 0 NA Intergenic Intergenic -10153 ENSMUSG00000041583.8 ENSMUSG00000041583 ENSMUST00000108513 Obox6 protein_coding Interval_107585 chr3 108701323 108702418 + 0 NA TTS (ENSMUSG00000027883.15) protein_coding-TTS (ENSMUSG00000027883.15) 643 ENSMUSG00000027883.15 ENSMUSG00000027883 ENSMUST00000124043 Gpsm2 protein_coding Interval_127897 chr5 108693892 108695167 + 0 NA promoter-TSS (ENSMUSG00000008090.14) protein_coding-promoter-TSS (ENSMUSG00000008090.14) -10545 ENSMUSG00000008090.14 ENSMUSG00000008090 ENSMUST00000199802 Fgfrl1 protein_coding Interval_171684 chr9 120140524 120141277 + 0 NA Intergenic Intergenic -5885 ENSMUSG00000111028.1 ENSMUSG00000111028 ENSMUST00000216043 Gm5922 lincRNA Interval_60991 chr15 78570455 78570928 + 0 NA exon (ENSMUSG00000033220.7, exon 2 of 4) protein_coding-exon (ENSMUSG00000033220.7, exon 2 of 4) -5719 ENSMUSG00000033220.7 ENSMUSG00000033220 ENSMUST00000229394 Rac2 protein_coding Interval_172761 chrX 48422424 48423135 + 0 NA intron (ENSMUSG00000031103.12, intron 2 of 7) protein_coding-intron (ENSMUSG00000031103.12, intron 2 of 8) 40353 ENSMUSG00000031103.12 ENSMUSG00000031103 ENSMUST00000140486 Elf4 protein_coding Interval_48620 chr13 100695286 100696847 + 0 NA intron (ENSMUSG00000048924.14, intron 11 of 11) protein_coding-intron (ENSMUSG00000048924.14, intron 11 of 11) 26349 ENSMUSG00000048924.14 ENSMUSG00000048924 ENSMUST00000057325 Ccdc125 protein_coding Interval_130604 chr5 129154715 129156258 + 0 NA intron (ENSMUSG00000044017.16, intron 13 of 24) protein_coding-intron (ENSMUSG00000044017.16, intron 14 of 25) -26969 ENSMUSG00000060419.8 ENSMUSG00000060419 ENSMUST00000140155 Rps16-ps2 processed_pseudogene Interval_71465 chr17 23954494 23954834 + 0 NA exon (ENSMUSG00000024125.2, exon 2 of 3) protein_coding-exon (ENSMUSG00000024125.2, exon 2 of 3) 610 ENSMUSG00000024125.2 ENSMUSG00000024125 ENSMUST00000024939 Sbpl protein_coding Interval_24563 chr11 34475148 34475361 + 0 NA intron (ENSMUSG00000020143.15, intron 25 of 26) protein_coding-intron (ENSMUSG00000020143.15, intron 25 of 51) 160496 ENSMUSG00000069911.11 ENSMUSG00000069911 ENSMUST00000093192 Insyn2b protein_coding Interval_173406 chrX 89488035 89488794 + 0 NA Intergenic Intergenic -47519 ENSMUSG00000082422.1 ENSMUSG00000082422 ENSMUST00000117080 Gm6973 processed_pseudogene Interval_101029 chr2 174327183 174330857 + 0 NA promoter-TSS (ENSMUSG00000027523.20) protein_coding-promoter-TSS (ENSMUSG00000027523.20) -15292 ENSMUSG00000027523.20 ENSMUSG00000027523 ENSMUST00000129534 Gnas protein_coding Interval_44260 chr13 43158225 43158479 + 0 NA intron (ENSMUSG00000021368.15, intron 1 of 2) protein_coding-intron (ENSMUSG00000021368.15, intron 5 of 7) 1200 ENSMUSG00000021368.15 ENSMUSG00000021368 ENSMUST00000221095 Tbc1d7 protein_coding Interval_49122 chr13 108229054 108229888 + 0 NA intron (ENSMUSG00000021696.9, intron 1 of 7) protein_coding-intron (ENSMUSG00000021696.9, intron 1 of 7) 4084 ENSMUSG00000114507.1 ENSMUSG00000114507 ENSMUST00000225536 Gm30747 processed_pseudogene Interval_172311 chrX 12859900 12860498 + 0 NA Intergenic Intergenic 10163 ENSMUSG00000077858.1 ENSMUSG00000077858 ENSMUST00000104666 Gm25063 miRNA Interval_3556 chr1 59562649 59563932 + 0 NA TTS (ENSMUSG00000047361.16) protein_coding-TTS (ENSMUSG00000047361.16) -14502 ENSMUSG00000099811.6 ENSMUSG00000099811 ENSMUST00000189864 Gm28411 antisense Interval_151372 chr7 121899257 121900264 + 0 NA intron (ENSMUSG00000030873.9, intron 1 of 2) protein_coding-intron (ENSMUSG00000030873.9, intron 2 of 12) 532 ENSMUSG00000030873.9 ENSMUSG00000030873 ENSMUST00000206079 Scnn1b protein_coding Interval_2797 chr1 45439036 45439504 + 0 NA intron (ENSMUSG00000026042.16, intron 2 of 15) protein_coding-intron (ENSMUSG00000026042.16, intron 2 of 53) -45636 ENSMUSG00000026042.16 ENSMUSG00000026042 ENSMUST00000131535 Col5a2 protein_coding Interval_53373 chr14 56734935 56736069 + 0 NA intron (ENSMUSG00000021938.12, intron 6 of 7) protein_coding-intron (ENSMUSG00000021938.12, intron 6 of 8) -36141 ENSMUSG00000097743.1 ENSMUSG00000097743 ENSMUST00000180682 Gm16973 lincRNA Interval_82542 chr18 75027061 75027414 + 0 NA intron (ENSMUSG00000035765.10, intron 1 of 8) protein_coding-intron (ENSMUSG00000035765.10, intron 1 of 16) 3381 ENSMUSG00000098305.1 ENSMUSG00000098305 ENSMUST00000185185 Gm27781 rRNA Interval_26812 chr11 60776445 60778011 + 0 NA promoter-TSS (ENSMUSG00000049323.8) protein_coding-promoter-TSS (ENSMUSG00000049323.8) 71 ENSMUSG00000002814.15 ENSMUSG00000002814 ENSMUST00000130068 Top3a protein_coding Interval_2090 chr1 36335141 36335533 + 0 NA TTS (ENSMUSG00000010453.12) protein_coding-TTS (ENSMUSG00000010453.12) 2629 ENSMUSG00000102762.1 ENSMUSG00000102762 ENSMUST00000192234 4930403P22Rik lincRNA Interval_51468 chr14 27798700 27799091 + 0 NA intron (ENSMUSG00000040640.11, intron 1 of 4) protein_coding-intron (ENSMUSG00000040640.11, intron 3 of 15) 77322 ENSMUSG00000109849.1 ENSMUSG00000109849 ENSMUST00000211470 Gm45645 antisense Interval_45549 chr13 55774559 55774895 + 0 NA TTS (ENSMUSG00000069223.10) antisense-TTS (ENSMUSG00000069223.10) 9767 ENSMUSG00000069223.10 ENSMUSG00000069223 ENSMUST00000152292 4930451E10Rik antisense Interval_60766 chr15 76619589 76620390 + 0 NA Intergenic Intergenic -2605 ENSMUSG00000063354.7 ENSMUSG00000063354 ENSMUST00000230317 Slc39a4 protein_coding Interval_43842 chr13 37519709 37520556 + 0 NA Intergenic Intergenic 10414 ENSMUSG00000100022.2 ENSMUSG00000100022 ENSMUST00000224398 Gm29590 lincRNA Interval_108531 chr3 128088308 128088717 + 0 NA Intergenic Intergenic 44848 ENSMUSG00000105816.4 ENSMUSG00000105816 ENSMUST00000198275 D030025E07Rik processed_transcript Interval_167606 chr9 71057374 71058125 + 0 NA Intergenic Intergenic -69093 ENSMUSG00000111618.1 ENSMUSG00000111618 ENSMUST00000213527 Gm47268 processed_pseudogene Interval_111166 chr4 13742762 13744522 + 0 NA exon (ENSMUSG00000006586.15, exon 1 of 11) protein_coding-exon (ENSMUSG00000006586.15, exon 1 of 11) -7655 ENSMUSG00000006586.15 ENSMUSG00000006586 ENSMUST00000139736 Runx1t1 protein_coding Interval_77056 chr17 86118057 86118383 + 0 NA intron (ENSMUSG00000024135.10, intron 2 of 6) protein_coding-intron (ENSMUSG00000024135.10, intron 9 of 20) -57355 ENSMUSG00000117546.1 ENSMUSG00000117546 ENSMUST00000234087 AC154542.1 TEC Interval_41398 chr12 113317389 113317864 + 0 NA intron (ENSMUSG00000102962.1, intron 2 of 2) IG_C_pseudogene-intron (ENSMUSG00000102962.1, intron 2 of 2) 1914 ENSMUSG00000102962.1 ENSMUSG00000102962 ENSMUST00000194233 Gm37944 IG_C_pseudogene Interval_159904 chr8 105059820 105061084 + 0 NA Intergenic Intergenic -8984 ENSMUSG00000110488.1 ENSMUSG00000110488 ENSMUST00000213031 Gm45724 TEC Interval_20396 chr10 117328784 117330998 + 0 NA Intergenic Intergenic -37023 ENSMUSG00000069515.6 ENSMUSG00000069515 ENSMUST00000092162 Lyz1 protein_coding Interval_39967 chr12 100149038 100149493 + 0 NA intron (ENSMUSG00000021179.8, intron 3 of 4) protein_coding-intron (ENSMUSG00000021179.8, intron 3 of 13) -19493 ENSMUSG00000021179.8 ENSMUSG00000021179 ENSMUST00000221954 Nrde2 protein_coding Interval_153777 chr8 8438769 8439119 + 0 NA intron (ENSMUSG00000109127.1, intron 3 of 3) lincRNA-intron (ENSMUSG00000109127.1, intron 3 of 3) 16485 ENSMUSG00000108913.1 ENSMUSG00000108913 ENSMUST00000207080 Gm2448 processed_pseudogene Interval_27049 chr11 62560315 62561007 + 0 NA Intergenic Intergenic 5722 ENSMUSG00000085748.1 ENSMUSG00000085748 ENSMUST00000155836 Gm12280 antisense Interval_20778 chr10 120910395 120910619 + 0 NA Intergenic Intergenic 11350 ENSMUSG00000086522.1 ENSMUSG00000086522 ENSMUST00000145987 Gm4473 bidirectional_promoter_lncRNA Interval_119742 chr4 139616157 139617066 + 0 NA exon (ENSMUSG00000041025.15, exon 11 of 11) protein_coding-exon (ENSMUSG00000041025.15, exon 11 of 11) -6283 ENSMUSG00000028737.15 ENSMUSG00000028737 ENSMUST00000124987 Aldh4a1 protein_coding Interval_15578 chr10 51770513 51770774 + 0 NA Intergenic Intergenic 13386 ENSMUSG00000112270.1 ENSMUSG00000112270 ENSMUST00000220412 Gm47613 lincRNA Interval_132925 chr5 148770600 148770973 + 0 NA Intergenic Intergenic -7177 ENSMUSG00000085740.1 ENSMUSG00000085740 ENSMUST00000155504 4930505K14Rik lincRNA Interval_502 chr1 6477625 6478055 + 0 NA Intergenic Intergenic -36544 ENSMUSG00000103845.1 ENSMUSG00000103845 ENSMUST00000194240 Gm19026 processed_pseudogene Interval_30828 chr11 96741969 96743690 + 0 NA intron (ENSMUSG00000057058.16, intron 10 of 10) protein_coding-intron (ENSMUSG00000057058.16, intron 10 of 11) -23973 ENSMUSG00000085242.1 ENSMUSG00000085242 ENSMUST00000124865 Gm11537 antisense Interval_49999 chr13 119462019 119463255 + 0 NA promoter-TSS (ENSMUSG00000062822.8) protein_coding-promoter-TSS (ENSMUSG00000062822.8) -139 ENSMUSG00000062822.8 ENSMUSG00000062822 ENSMUST00000224312 4833420G17Rik protein_coding Interval_173572 chrX 99591056 99591553 + 0 NA Intergenic Intergenic 96470 ENSMUSG00000082505.1 ENSMUSG00000082505 ENSMUST00000117174 Gm14816 processed_pseudogene Interval_162331 chr8 127161554 127162087 + 0 NA intron (ENSMUSG00000025812.18, intron 2 of 15) protein_coding-intron (ENSMUSG00000025812.18, intron 2 of 23) -9584 ENSMUSG00000025812.18 ENSMUSG00000025812 ENSMUST00000159940 Pard3 protein_coding Interval_48377 chr13 98613005 98613647 + 0 NA promoter-TSS (ENSMUSG00000114733.1) processed_pseudogene-promoter-TSS (ENSMUSG00000114733.1) -175 ENSMUSG00000114733.1 ENSMUSG00000114733 ENSMUST00000223936 Gm4815 processed_pseudogene Interval_53761 chr14 61571330 61571554 + 0 NA Intergenic Intergenic 12644 ENSMUSG00000114902.1 ENSMUSG00000114902 ENSMUST00000225750 Gm4118 processed_pseudogene Interval_49241 chr13 109767846 109768931 + 0 NA intron (ENSMUSG00000021699.17, intron 4 of 15) protein_coding-intron (ENSMUSG00000021699.17, intron 3 of 14) -135421 ENSMUSG00000084651.1 ENSMUSG00000084651 ENSMUST00000122702 Mir1904 miRNA Interval_34303 chr12 3245415 3246951 + 0 NA intron (ENSMUSG00000079179.9, intron 6 of 7) antisense-intron (ENSMUSG00000079179.9, intron 5 of 6) 10268 ENSMUSG00000079179.9 ENSMUSG00000079179 ENSMUST00000049684 Rab10os antisense Interval_168292 chr9 78471006 78471226 + 0 NA TTS (ENSMUSG00000032342.13) protein_coding-TTS (ENSMUSG00000032342.13) 6417 ENSMUSG00000032342.13 ENSMUSG00000032342 ENSMUST00000136478 Mto1 protein_coding Interval_170454 chr9 108081711 108083436 + 0 NA TTS (ENSMUSG00000032591.15) protein_coding-TTS (ENSMUSG00000032591.15) 1075 ENSMUSG00000098787.1 ENSMUSG00000098787 ENSMUST00000184227 Mir7088 miRNA Interval_167548 chr9 70391833 70392874 + 0 NA intron (ENSMUSG00000032220.10, intron 27 of 28) protein_coding-intron (ENSMUSG00000032220.10, intron 26 of 27) 13400 ENSMUSG00000093763.1 ENSMUSG00000093763 ENSMUST00000176002 Mir5626 miRNA Interval_62374 chr15 91298511 91298861 + 0 NA intron (ENSMUSG00000036298.10, intron 7 of 9) protein_coding-intron (ENSMUSG00000036298.10, intron 7 of 9) 99192 ENSMUSG00000078932.8 ENSMUSG00000078932 ENSMUST00000109284 CN725425 protein_coding Interval_47270 chr13 80285335 80286100 + 0 NA Intergenic Intergenic 124389 ENSMUSG00000114462.1 ENSMUSG00000114462 ENSMUST00000226097 Gm8371 processed_pseudogene Interval_12111 chr1 189812066 189813275 + 0 NA intron (ENSMUSG00000026604.17, intron 3 of 9) protein_coding-intron (ENSMUSG00000026604.17, intron 2 of 17) -14560 ENSMUSG00000102248.1 ENSMUSG00000102248 ENSMUST00000192214 Gm30280 processed_pseudogene Interval_140582 chr6 119817987 119818888 + 0 NA intron (ENSMUSG00000030172.15, intron 2 of 19) protein_coding-intron (ENSMUSG00000030172.15, intron 1 of 18) -74483 ENSMUSG00000080719.1 ENSMUSG00000080719 ENSMUST00000121192 Gm15532 processed_pseudogene Interval_83841 chr19 5037896 5039239 + 0 NA promoter-TSS (ENSMUSG00000047379.7) protein_coding-promoter-TSS (ENSMUSG00000047379.7) -324 ENSMUSG00000117789.1 ENSMUSG00000117789 ENSMUST00000236560 Gm50388 protein_coding Interval_109591 chr3 144825273 144825909 + 0 NA intron (ENSMUSG00000037033.9, intron 12 of 13) protein_coding-intron (ENSMUSG00000037033.9, intron 12 of 13) 17215 ENSMUSG00000105900.1 ENSMUSG00000105900 ENSMUST00000198543 Gm43240 antisense Interval_52666 chr14 48388425 48388643 + 0 NA promoter-TSS (ENSMUSG00000115687.1) processed_pseudogene-promoter-TSS (ENSMUSG00000115687.1) -529 ENSMUSG00000115687.1 ENSMUSG00000115687 ENSMUST00000228744 Gm18962 processed_pseudogene Interval_25505 chr11 49341256 49341526 + 0 NA TTS (ENSMUSG00000045421.2) protein_coding-TTS (ENSMUSG00000045421.2) 6203 ENSMUSG00000045421.2 ENSMUSG00000045421 ENSMUST00000062719 Olfr1390 protein_coding Interval_104158 chr3 59260170 59260865 + 0 NA intron (ENSMUSG00000056476.13, intron 31 of 43) protein_coding-intron (ENSMUSG00000056476.13, intron 30 of 42) -9269 ENSMUSG00000104550.1 ENSMUSG00000104550 ENSMUST00000199400 Gm43589 TEC Interval_19492 chr10 100212337 100212984 + 0 NA Intergenic Intergenic -8318 ENSMUSG00000112633.1 ENSMUSG00000112633 ENSMUST00000220057 Gm47627 TEC Interval_16206 chr10 61424549 61424745 + 0 NA exon (ENSMUSG00000037171.6, exon 3 of 3) protein_coding-exon (ENSMUSG00000037171.6, exon 3 of 3) 6675 ENSMUSG00000037171.6 ENSMUSG00000037171 ENSMUST00000049339 Nodal protein_coding Interval_71586 chr17 24695544 24696829 + 0 NA promoter-TSS (ENSMUSG00000019320.14) protein_coding-promoter-TSS (ENSMUSG00000019320.14) -480 ENSMUSG00000040888.10 ENSMUSG00000040888 ENSMUST00000234235 Gfer protein_coding Interval_27383 chr11 67112137 67113115 + 0 NA exon (ENSMUSG00000087410.7, exon 5 of 5) lincRNA-exon (ENSMUSG00000087410.7, exon 5 of 5) 4215 ENSMUSG00000087410.7 ENSMUSG00000087410 ENSMUST00000153497 2310065F04Rik lincRNA Interval_159164 chr8 91312955 91313840 + 0 NA promoter-TSS (ENSMUSG00000033282.14) protein_coding-promoter-TSS (ENSMUSG00000033282.14) -217 ENSMUSG00000055932.15 ENSMUSG00000055932 ENSMUST00000140276 Fto protein_coding Interval_83461 chr18 85963510 85963999 + 0 NA Intergenic Intergenic -115025 ENSMUSG00000118241.1 ENSMUSG00000118241 ENSMUST00000237360 Gm5824 processed_pseudogene Interval_10454 chr1 170992356 170992870 + 0 NA Intergenic Intergenic 10669 ENSMUSG00000104340.1 ENSMUSG00000104340 ENSMUST00000194503 Gm10522 lincRNA Interval_143766 chr7 16192049 16192669 + 0 NA Intergenic Intergenic 14613 ENSMUSG00000041420.18 ENSMUSG00000041420 ENSMUST00000176714 Meis3 protein_coding Interval_121490 chr4 156161728 156162867 + 0 NA Intergenic Intergenic 23810 ENSMUSG00000041936.18 ENSMUSG00000041936 ENSMUST00000144749 Agrn protein_coding Interval_100483 chr2 169414193 169414688 + 0 NA Intergenic Intergenic -8990 ENSMUSG00000085350.1 ENSMUSG00000085350 ENSMUST00000131509 4930529I22Rik lincRNA Interval_91315 chr2 37723876 37724096 + 0 NA Intergenic Intergenic -35702 ENSMUSG00000092958.1 ENSMUSG00000092958 ENSMUST00000175217 Mir5128 miRNA Interval_77357 chr17 88195566 88196153 + 0 NA Intergenic Intergenic 27372 ENSMUSG00000117369.1 ENSMUSG00000117369 ENSMUST00000233989 Gm31499 lincRNA Interval_145076 chr7 29908187 29908852 + 0 NA promoter-TSS (ENSMUSG00000099689.6) protein_coding-promoter-TSS (ENSMUSG00000099689.6) 296 ENSMUSG00000099689.6 ENSMUSG00000099689 ENSMUST00000186475 Zfp383 protein_coding Interval_161871 chr8 123340987 123342338 + 0 NA intron (ENSMUSG00000010154.7, intron 1 of 14) protein_coding-intron (ENSMUSG00000010154.7, intron 1 of 14) -8589 ENSMUSG00000010154.7 ENSMUSG00000010154 ENSMUST00000212404 Spire2 protein_coding Interval_56573 chr14 120414024 120414329 + 0 NA intron (ENSMUSG00000022139.17, intron 8 of 8) protein_coding-intron (ENSMUSG00000022139.17, intron 8 of 8) -25191 ENSMUSG00000097903.2 ENSMUSG00000097903 ENSMUST00000181685 Gm26679 antisense Interval_23305 chr11 21279759 21280933 + 0 NA promoter-TSS (ENSMUSG00000081868.1) processed_pseudogene-promoter-TSS (ENSMUSG00000081868.1) -122 ENSMUSG00000081868.1 ENSMUSG00000081868 ENSMUST00000118219 Gm12039 processed_pseudogene Interval_61476 chr15 81851612 81851878 + 0 NA exon (ENSMUSG00000048546.8, exon 2 of 2) protein_coding-exon (ENSMUSG00000048546.8, exon 2 of 2) -5996 ENSMUSG00000116075.1 ENSMUSG00000116075 ENSMUST00000230781 Gm49476 antisense Interval_131775 chr5 139800244 139800567 + 0 NA TTS (ENSMUSG00000018143.10) protein_coding-TTS (ENSMUSG00000018143.10) 8871 ENSMUSG00000018143.10 ENSMUSG00000018143 ENSMUST00000110836 Mafk protein_coding Interval_161210 chr8 118667729 118668157 + 0 NA intron (ENSMUSG00000031841.19, intron 2 of 7) protein_coding-intron (ENSMUSG00000031841.19, intron 2 of 13) -52064 ENSMUSG00000110667.1 ENSMUSG00000110667 ENSMUST00000211881 Gm45720 antisense Interval_7588 chr1 132355467 132356143 + 0 NA TTS (ENSMUSG00000042066.16) protein_coding-TTS (ENSMUSG00000042066.16) 12082 ENSMUSG00000042066.16 ENSMUSG00000042066 ENSMUST00000125439 Tmcc2 protein_coding Interval_21216 chr10 127264984 127266925 + 0 NA promoter-TSS (ENSMUSG00000025410.10) protein_coding-promoter-TSS (ENSMUSG00000025410.10) -2859 ENSMUSG00000074657.5 ENSMUSG00000074657 ENSMUST00000218298 Kif5a protein_coding Interval_143039 chr6 148813547 148814248 + 0 NA intron (ENSMUSG00000040029.15, intron 5 of 10) protein_coding-intron (ENSMUSG00000040029.15, intron 5 of 24) -14065 ENSMUSG00000040029.15 ENSMUSG00000040029 ENSMUST00000205196 Ipo8 protein_coding Interval_105718 chr3 88905828 88906046 + 0 NA promoter-TSS (ENSMUSG00000065236.1) rRNA-promoter-TSS (ENSMUSG00000065236.1) -573 ENSMUSG00000065236.1 ENSMUSG00000065236 ENSMUST00000083302 n-R5s197 rRNA Interval_165820 chr9 53507896 53508925 + 0 NA intron (ENSMUSG00000034218.16, intron 14 of 63) protein_coding-intron (ENSMUSG00000034218.16, intron 13 of 61) 28330 ENSMUSG00000034218.16 ENSMUSG00000034218 ENSMUST00000150244 Atm protein_coding Interval_2884 chr1 47488576 47488997 + 0 NA Intergenic Intergenic 9918 ENSMUSG00000100530.1 ENSMUSG00000100530 ENSMUST00000187720 Gm18117 processed_pseudogene Interval_148854 chr7 89322583 89323336 + 0 NA intron (ENSMUSG00000039428.11, intron 1 of 8) protein_coding-intron (ENSMUSG00000039428.11, intron 1 of 14) -15411 ENSMUSG00000109327.1 ENSMUSG00000109327 ENSMUST00000207056 Gm44995 antisense Interval_24678 chr11 35839998 35842380 + 0 NA intron (ENSMUSG00000018849.6, intron 21 of 22) protein_coding-intron (ENSMUSG00000018849.6, intron 21 of 22) 12365 ENSMUSG00000018849.6 ENSMUSG00000018849 ENSMUST00000127086 Wwc1 protein_coding Interval_20921 chr10 122032381 122033802 + 0 NA intron (ENSMUSG00000020121.15, intron 1 of 3) protein_coding-intron (ENSMUSG00000020121.15, intron 1 of 21) 14224 ENSMUSG00000020121.15 ENSMUSG00000020121 ENSMUST00000162710 Srgap1 protein_coding Interval_144203 chr7 19935447 19935931 + 0 NA Intergenic Intergenic 13883 ENSMUSG00000109281.1 ENSMUSG00000109281 ENSMUST00000207343 Gm44651 processed_pseudogene Interval_133289 chr5 151223606 151224389 + 0 NA intron (ENSMUSG00000107011.1, intron 2 of 5) protein_coding-intron (ENSMUSG00000016128.14, intron 1 of 3) -28308 ENSMUSG00000107387.1 ENSMUSG00000107387 ENSMUST00000202597 5430435K18Rik lincRNA Interval_49946 chr13 118657023 118658609 + 0 NA intron (ENSMUSG00000114613.1, intron 1 of 6) lincRNA-intron (ENSMUSG00000114613.1, intron 1 of 6) 927 ENSMUSG00000114613.1 ENSMUSG00000114613 ENSMUST00000224103 Gm10732 lincRNA Interval_171476 chr9 118645275 118645972 + 0 NA intron (ENSMUSG00000039115.13, intron 4 of 27) protein_coding-intron (ENSMUSG00000039115.13, intron 4 of 27) -55428 ENSMUSG00000110676.1 ENSMUSG00000110676 ENSMUST00000212679 Gm45897 lincRNA Interval_143625 chr7 13320248 13320958 + 0 NA Intergenic Intergenic -4052 ENSMUSG00000033847.15 ENSMUSG00000033847 ENSMUST00000043612 Pla2g4c protein_coding Interval_96338 chr2 121760308 121761059 + 0 NA intron (ENSMUSG00000027238.17, intron 1 of 7) protein_coding-intron (ENSMUSG00000027238.17, intron 1 of 13) 42153 ENSMUSG00000084244.1 ENSMUSG00000084244 ENSMUST00000118165 Gm14020 processed_pseudogene Interval_150229 chr7 108601751 108602523 + 0 NA Intergenic Intergenic -8650 ENSMUSG00000058244.4 ENSMUSG00000058244 ENSMUST00000077343 Olfr506 protein_coding Interval_135708 chr6 44006650 44007541 + 0 NA Intergenic Intergenic 76260 ENSMUSG00000107598.1 ENSMUSG00000107598 ENSMUST00000203777 Gm35216 lincRNA Interval_5813 chr1 92099780 92100121 + 0 NA intron (ENSMUSG00000026313.16, intron 1 of 3) protein_coding-intron (ENSMUSG00000026313.16, intron 1 of 25) -77853 ENSMUSG00000102565.1 ENSMUSG00000102565 ENSMUST00000192836 Gm37036 TEC Interval_163208 chr9 18291710 18292873 + 0 NA promoter-TSS (ENSMUSG00000001774.8) protein_coding-promoter-TSS (ENSMUSG00000001774.8) -97 ENSMUSG00000001774.8 ENSMUSG00000001774 ENSMUST00000215421 Chordc1 protein_coding Interval_83773 chr19 4601918 4602888 + 0 NA TTS (ENSMUSG00000024892.17) protein_coding-TTS (ENSMUSG00000024892.17) 7995 ENSMUSG00000024892.17 ENSMUSG00000024892 ENSMUST00000238089 Pcx protein_coding Interval_148667 chr7 83975292 83975592 + 0 NA intron (ENSMUSG00000052353.13, intron 11 of 23) protein_coding-intron (ENSMUSG00000052353.13, intron 11 of 28) 80389 ENSMUSG00000038503.15 ENSMUSG00000038503 ENSMUST00000207373 Mesd protein_coding Interval_147893 chr7 75176265 75176584 + 0 NA intron (ENSMUSG00000053025.13, intron 2 of 12) protein_coding-intron (ENSMUSG00000053025.13, intron 2 of 12) -28698 ENSMUSG00000053025.13 ENSMUSG00000053025 ENSMUST00000206236 Sv2b protein_coding Interval_10520 chr1 171450258 171450512 + 0 NA intron (ENSMUSG00000038235.4, intron 1 of 2) protein_coding-intron (ENSMUSG00000038235.4, intron 1 of 9) -12465 ENSMUSG00000038235.4 ENSMUSG00000038235 ENSMUST00000155913 F11r protein_coding Interval_129896 chr5 122967757 122968775 + 0 NA intron (ENSMUSG00000029475.17, intron 4 of 10) protein_coding-intron (ENSMUSG00000029475.17, intron 4 of 22) -21088 ENSMUSG00000056735.5 ENSMUSG00000056735 ENSMUST00000148466 A930024E05Rik antisense Interval_145796 chr7 38396011 38396445 + 0 NA intron (ENSMUSG00000101708.6, intron 2 of 5) transcribed_processed_pseudogene-intron (ENSMUSG00000101708.6, intron 2 of 6) 6540 ENSMUSG00000102073.1 ENSMUSG00000102073 ENSMUST00000190556 Gm6818 unprocessed_pseudogene Interval_3809 chr1 63210037 63210633 + 0 NA intron (ENSMUSG00000046856.13, intron 1 of 2) protein_coding-intron (ENSMUSG00000046856.13, intron 1 of 2) 3888 ENSMUSG00000046856.13 ENSMUSG00000046856 ENSMUST00000187533 Gpr1 protein_coding Interval_6216 chr1 102263163 102265193 + 0 NA Intergenic Intergenic 102811 ENSMUSG00000099770.1 ENSMUSG00000099770 ENSMUST00000187219 Gm28623 unprocessed_pseudogene Interval_82016 chr18 67219645 67220468 + 0 NA intron (ENSMUSG00000024524.17, intron 12 of 12) protein_coding-intron (ENSMUSG00000024524.17, intron 11 of 11) -14086 ENSMUSG00000117757.1 ENSMUSG00000117757 ENSMUST00000209359 Gm50169 antisense Interval_104087 chr3 58503213 58505222 + 0 NA Intergenic Intergenic 21675 ENSMUSG00000027808.8 ENSMUSG00000027808 ENSMUST00000029385 Serp1 protein_coding Interval_63962 chr16 4865680 4867024 + 0 NA intron (ENSMUSG00000022518.16, intron 7 of 7) protein_coding-intron (ENSMUSG00000022518.16, intron 15 of 15) 2029 ENSMUSG00000022518.16 ENSMUSG00000022518 ENSMUST00000180939 4930562C15Rik protein_coding Interval_99655 chr2 163974278 163974523 + 0 NA Intergenic Intergenic -21103 ENSMUSG00000018326.9 ENSMUSG00000018326 ENSMUST00000131288 Ywhab protein_coding Interval_155684 chr8 36142220 36143190 + 0 NA intron (ENSMUSG00000050271.12, intron 5 of 5) protein_coding-intron (ENSMUSG00000050271.12, intron 5 of 5) -16774 ENSMUSG00000109704.1 ENSMUSG00000109704 ENSMUST00000211253 Gm38414 lincRNA Interval_18921 chr10 93165596 93166799 + 0 NA intron (ENSMUSG00000020015.10, intron 1 of 6) protein_coding-intron (ENSMUSG00000020015.10, intron 1 of 16) 3412 ENSMUSG00000089214.1 ENSMUSG00000089214 ENSMUST00000158589 Mir1931 miRNA Interval_115385 chr4 98436242 98437242 + 0 NA promoter-TSS (ENSMUSG00000061859.17) protein_coding-promoter-TSS (ENSMUSG00000061859.17) 40951 ENSMUSG00000061859.17 ENSMUSG00000061859 ENSMUST00000030290 Patj protein_coding Interval_88986 chr2 14040978 14041974 + 0 NA intron (ENSMUSG00000063275.15, intron 4 of 6) protein_coding-intron (ENSMUSG00000063275.15, intron 5 of 7) -1053 ENSMUSG00000103926.1 ENSMUSG00000103926 ENSMUST00000195416 Gm37894 TEC Interval_148587 chr7 82854108 82855211 + 0 NA intron (ENSMUSG00000030636.15, intron 2 of 4) lincRNA-intron (ENSMUSG00000030636.15, intron 2 of 4) 3060 ENSMUSG00000030636.15 ENSMUSG00000030636 ENSMUST00000032872 1700010L04Rik lincRNA Interval_127882 chr5 108554418 108554757 + 0 NA Intergenic Intergenic -1233 ENSMUSG00000105590.1 ENSMUSG00000105590 ENSMUST00000196046 Gm43364 TEC Interval_132832 chr5 148199930 148200855 + 0 NA intron (ENSMUSG00000029651.16, intron 2 of 3) protein_coding-intron (ENSMUSG00000029651.16, intron 4 of 14) -5836 ENSMUSG00000107033.1 ENSMUSG00000107033 ENSMUST00000200900 Gm43553 TEC Interval_97913 chr2 145641556 145642280 + 0 NA exon (ENSMUSG00000063873.10, exon 17 of 17) protein_coding-exon (ENSMUSG00000063873.10, exon 17 of 17) -33297 ENSMUSG00000001768.16 ENSMUSG00000001768 ENSMUST00000145874 Rin2 protein_coding Interval_55893 chr14 101843340 101844692 + 0 NA intron (ENSMUSG00000033060.16, intron 2 of 5) protein_coding-intron (ENSMUSG00000033060.16, intron 4 of 30) 3509 ENSMUSG00000033060.16 ENSMUSG00000033060 ENSMUST00000160038 Lmo7 protein_coding Interval_138915 chr6 93493885 93494200 + 0 NA Intergenic Intergenic -15531 ENSMUSG00000088630.1 ENSMUSG00000088630 ENSMUST00000158005 Gm22312 snoRNA Interval_40236 chr12 102681422 102682036 + 0 NA intron (ENSMUSG00000096751.3, intron 2 of 2) protein_coding-intron (ENSMUSG00000057963.9, intron 1 of 9) 3291 ENSMUSG00000089324.1 ENSMUSG00000089324 ENSMUST00000158699 Mir1936 miRNA Interval_28681 chr11 77724191 77725484 + 0 NA intron (ENSMUSG00000000724.10, intron 1 of 5) protein_coding-intron (ENSMUSG00000000724.10, intron 1 of 5) -3003 ENSMUSG00000000724.10 ENSMUSG00000000724 ENSMUST00000078623 Cryba1 protein_coding Interval_34463 chr12 4396327 4397043 + 0 NA intron (ENSMUSG00000020647.10, intron 1 of 22) protein_coding-intron (ENSMUSG00000020647.10, intron 2 of 22) 2203 ENSMUSG00000084597.1 ENSMUSG00000084597 ENSMUST00000122648 Gm22343 misc_RNA Interval_20493 chr10 117925213 117926462 + 0 NA intron (ENSMUSG00000112500.1, intron 1 of 3) lincRNA-intron (ENSMUSG00000112500.1, intron 1 of 3) 378 ENSMUSG00000112500.1 ENSMUSG00000112500 ENSMUST00000217950 4933411E08Rik lincRNA Interval_11934 chr1 187305597 187307214 + 0 NA intron (ENSMUSG00000039210.16, intron 6 of 7) protein_coding-intron (ENSMUSG00000039210.16, intron 6 of 9) 69948 ENSMUSG00000104394.2 ENSMUSG00000104394 ENSMUST00000193542 Gm37254 TEC Interval_66810 chr16 37804029 37804280 + 0 NA intron (ENSMUSG00000022816.11, intron 1 of 2) protein_coding-intron (ENSMUSG00000022816.11, intron 2 of 10) 27099 ENSMUSG00000022816.11 ENSMUSG00000022816 ENSMUST00000123077 Fstl1 protein_coding Interval_85661 chr19 29422395 29423168 + 0 NA intron (ENSMUSG00000016498.10, intron 1 of 4) protein_coding-intron (ENSMUSG00000016498.10, intron 2 of 5) 722 ENSMUSG00000016498.10 ENSMUSG00000016498 ENSMUST00000235164 Pdcd1lg2 protein_coding Interval_141042 chr6 124580351 124580805 + 0 NA exon (ENSMUSG00000098470.1, exon 11 of 11) protein_coding-exon (ENSMUSG00000098470.1, exon 11 of 11) 10284 ENSMUSG00000098470.1 ENSMUSG00000098470 ENSMUST00000184647 C1rb protein_coding Interval_107332 chr3 105932411 105932858 + 0 NA promoter-TSS (ENSMUSG00000074342.3) protein_coding-promoter-TSS (ENSMUSG00000074342.3) -4618 ENSMUSG00000074342.3 ENSMUSG00000074342 ENSMUST00000126230 I830077J02Rik protein_coding Interval_172827 chrX 50632333 50632808 + 0 NA intron (ENSMUSG00000085396.7, intron 1 of 19) processed_transcript-intron (ENSMUSG00000085396.7, intron 1 of 6) -67687 ENSMUSG00000085396.7 ENSMUSG00000085396 ENSMUST00000148530 Firre processed_transcript Interval_53624 chr14 60217325 60218901 + 0 NA TTS (ENSMUSG00000114797.1) protein_coding-TTS (ENSMUSG00000114797.1) -1694 ENSMUSG00000114584.1 ENSMUSG00000114584 ENSMUST00000225931 Gm47694 TEC Interval_9741 chr1 161612592 161612800 + 0 NA Intergenic Intergenic -60030 ENSMUSG00000089353.1 ENSMUSG00000089353 ENSMUST00000158728 Gm25488 rRNA Interval_160878 chr8 114468574 114469645 + 0 NA intron (ENSMUSG00000004637.15, intron 1 of 2) protein_coding-intron (ENSMUSG00000004637.15, intron 4 of 8) 51023 ENSMUSG00000008874.3 ENSMUSG00000008874 ENSMUST00000009018 Clec3a protein_coding Interval_20697 chr10 120319529 120320131 + 0 NA Intergenic Intergenic 9552 ENSMUSG00000102382.1 ENSMUSG00000102382 ENSMUST00000192540 Gm38141 TEC Interval_114266 chr4 70326805 70327015 + 0 NA intron (ENSMUSG00000039298.16, intron 9 of 33) protein_coding-intron (ENSMUSG00000039298.16, intron 9 of 33) -77537 ENSMUSG00000080902.1 ENSMUSG00000080902 ENSMUST00000120944 Ywhaq-ps3 transcribed_processed_pseudogene Interval_143000 chr6 148241958 148242521 + 0 NA intron (ENSMUSG00000030306.14, intron 18 of 18) protein_coding-intron (ENSMUSG00000030306.14, intron 19 of 19) -18911 ENSMUSG00000082199.1 ENSMUSG00000082199 ENSMUST00000120136 Gm15763 processed_pseudogene Interval_131563 chr5 138137842 138138581 + 0 NA Intergenic Intergenic 14688 ENSMUSG00000037007.17 ENSMUSG00000037007 ENSMUST00000132318 Zfp113 protein_coding Interval_116738 chr4 117013417 117013941 + 0 NA Intergenic Intergenic 2087 ENSMUSG00000082249.1 ENSMUSG00000082249 ENSMUST00000120207 Gm12997 processed_pseudogene Interval_57969 chr15 25785530 25786140 + 0 NA exon (ENSMUSG00000022272.17, exon 7 of 21) protein_coding-exon (ENSMUSG00000022272.17, exon 7 of 21) 17279 ENSMUSG00000022272.17 ENSMUSG00000022272 ENSMUST00000145587 Myo10 protein_coding Interval_11353 chr1 181171551 181171998 + 0 NA Intergenic Intergenic 27081 ENSMUSG00000062169.13 ENSMUSG00000062169 ENSMUST00000111057 Cnih4 protein_coding Interval_64010 chr16 5233197 5234348 + 0 NA exon (ENSMUSG00000039427.14, exon 1 of 12) protein_coding-exon (ENSMUSG00000039427.14, exon 1 of 12) 134 ENSMUSG00000039427.14 ENSMUSG00000039427 ENSMUST00000142902 Alg1 protein_coding Interval_25863 chr11 52230765 52232610 + 0 NA promoter-TSS (ENSMUSG00000036309.14) protein_coding-promoter-TSS (ENSMUSG00000036309.14) -350 ENSMUSG00000036309.14 ENSMUSG00000036309 ENSMUST00000116595 Skp1a protein_coding Interval_120495 chr4 148978179 148979909 + 0 NA intron (ENSMUSG00000086740.1, intron 2 of 2) protein_coding-intron (ENSMUSG00000028975.16, intron 4 of 8) 18684 ENSMUSG00000086740.1 ENSMUSG00000086740 ENSMUST00000153443 Gm17029 antisense Interval_136227 chr6 52172118 52173305 + 0 NA promoter-TSS (ENSMUSG00000087626.1) antisense-promoter-TSS (ENSMUSG00000087626.1) -170 ENSMUSG00000087626.1 ENSMUSG00000087626 ENSMUST00000133723 Gm15050 antisense Interval_116774 chr4 117229300 117230892 + 0 NA intron (ENSMUSG00000060268.12, intron 5 of 12) protein_coding-intron (ENSMUSG00000060268.12, intron 5 of 7) -16314 ENSMUSG00000086482.1 ENSMUSG00000086482 ENSMUST00000141554 1700012C08Rik processed_transcript Interval_155370 chr8 32713897 32714572 + 0 NA intron (ENSMUSG00000062991.9, intron 1 of 12) protein_coding-intron (ENSMUSG00000062991.9, intron 1 of 8) 228248 ENSMUSG00000079070.10 ENSMUSG00000079070 ENSMUST00000180220 Gm3985 lincRNA Interval_173462 chrX 94177642 94178656 + 0 NA Intergenic Intergenic 34713 ENSMUSG00000035150.15 ENSMUSG00000035150 ENSMUST00000127963 Eif2s3x protein_coding Interval_54938 chr14 76361407 76361707 + 0 NA Intergenic Intergenic -57271 ENSMUSG00000022010.19 ENSMUSG00000022010 ENSMUST00000133224 Tsc22d1 protein_coding Interval_153350 chr7 143822390 143823509 + 0 NA promoter-TSS (ENSMUSG00000031090.14) protein_coding-promoter-TSS (ENSMUSG00000031090.14) -144 ENSMUSG00000031090.14 ENSMUSG00000031090 ENSMUST00000142749 Nadsyn1 protein_coding Interval_162808 chr9 9310852 9311692 + 0 NA Intergenic Intergenic 9881 ENSMUSG00000088076.1 ENSMUSG00000088076 ENSMUST00000157451 Gm22815 snRNA Interval_102802 chr3 31158455 31158917 + 0 NA intron (ENSMUSG00000037625.7, intron 2 of 2) protein_coding-intron (ENSMUSG00000037625.7, intron 2 of 2) 8766 ENSMUSG00000037625.7 ENSMUSG00000037625 ENSMUST00000046174 Cldn11 protein_coding Interval_24994 chr11 42701789 42702215 + 0 NA Intergenic Intergenic -195493 ENSMUSG00000084627.1 ENSMUSG00000084627 ENSMUST00000122678 Gm25543 misc_RNA Interval_107017 chr3 102991143 102991376 + 0 NA Intergenic Intergenic -4917 ENSMUSG00000027854.12 ENSMUSG00000027854 ENSMUST00000196827 Sike1 protein_coding Interval_58070 chr15 27612578 27613655 + 0 NA intron (ENSMUSG00000046034.8, intron 3 of 4) protein_coding-intron (ENSMUSG00000046034.8, intron 4 of 6) 17562 ENSMUSG00000046034.8 ENSMUSG00000046034 ENSMUST00000228439 Otulin protein_coding Interval_121781 chr5 8055768 8057154 + 0 NA promoter-TSS (ENSMUSG00000003161.15) protein_coding-promoter-TSS (ENSMUSG00000003161.15) 1322 ENSMUSG00000082867.1 ENSMUSG00000082867 ENSMUST00000121828 Gm15730 processed_pseudogene Interval_132235 chr5 143509810 143510114 + 0 NA intron (ENSMUSG00000001847.14, intron 3 of 6) protein_coding-intron (ENSMUSG00000001847.14, intron 3 of 5) 8220 ENSMUSG00000001847.14 ENSMUSG00000001847 ENSMUST00000131513 Rac1 protein_coding Interval_160954 chr8 116336048 116336647 + 0 NA Intergenic Intergenic -20714 ENSMUSG00000110709.1 ENSMUSG00000110709 ENSMUST00000212522 1700018P08Rik lincRNA Interval_124231 chr5 41781240 41781573 + 0 NA Intergenic Intergenic -16905 ENSMUSG00000049691.8 ENSMUSG00000049691 ENSMUST00000060820 Nkx3-2 protein_coding Interval_39743 chr12 96426224 96426599 + 0 NA Intergenic Intergenic 133989 ENSMUSG00000112658.1 ENSMUSG00000112658 ENSMUST00000218908 Gm47395 processed_pseudogene Interval_153224 chr7 142580190 142582050 + 0 NA Intergenic Intergenic 3271 ENSMUSG00000098816.1 ENSMUSG00000098816 ENSMUST00000184337 Gm27786 misc_RNA Interval_11343 chr1 181090148 181092524 + 0 NA TTS (ENSMUSG00000026516.8) protein_coding-TTS (ENSMUSG00000026516.8) 207 ENSMUSG00000103178.1 ENSMUSG00000103178 ENSMUST00000195511 Fgfr3-ps processed_pseudogene Interval_48390 chr13 98697152 98698164 + 0 NA Intergenic Intergenic -2890 ENSMUSG00000052485.7 ENSMUSG00000052485 ENSMUST00000148950 Tmem171 protein_coding Interval_66949 chr16 38725107 38725578 + 0 NA Intergenic Intergenic -12444 ENSMUSG00000022799.4 ENSMUSG00000022799 ENSMUST00000132697 Arhgap31 protein_coding Interval_72798 chr17 32237995 32238208 + 0 NA intron (ENSMUSG00000024002.18, intron 1 of 8) protein_coding-intron (ENSMUSG00000024002.18, intron 2 of 19) -4062 ENSMUSG00000116414.2 ENSMUSG00000116414 ENSMUST00000230961 Gm4432 processed_pseudogene Interval_58006 chr15 25975674 25975844 + 0 NA Intergenic Intergenic -8607 ENSMUSG00000052253.6 ENSMUSG00000052253 ENSMUST00000227093 Zfp622 protein_coding Interval_115945 chr4 106473971 106474867 + 0 NA Intergenic Intergenic -10090 ENSMUSG00000044254.6 ENSMUSG00000044254 ENSMUST00000049507 Pcsk9 protein_coding Interval_71409 chr17 23585793 23588214 + 0 NA promoter-TSS (ENSMUSG00000062012.14) protein_coding-promoter-TSS (ENSMUSG00000062012.14) -6708 ENSMUSG00000062012.14 ENSMUSG00000062012 ENSMUST00000228298 Zfp13 protein_coding Interval_84857 chr19 17590596 17591850 + 0 NA intron (ENSMUSG00000024713.16, intron 11 of 18) protein_coding-intron (ENSMUSG00000024713.16, intron 12 of 37) -101540 ENSMUSG00000118270.1 ENSMUSG00000118270 ENSMUST00000237894 Gm17819 processed_pseudogene Interval_33528 chr11 117052811 117053078 + 0 NA Intergenic Intergenic -5481 ENSMUSG00000085104.1 ENSMUSG00000085104 ENSMUST00000139704 Gm11731 lincRNA Interval_40760 chr12 108208982 108209570 + 0 NA intron (ENSMUSG00000084883.2, intron 3 of 5) protein_coding-intron (ENSMUSG00000084883.2, intron 4 of 6) 10191 ENSMUSG00000021258.10 ENSMUSG00000021258 ENSMUST00000223363 Ccnk protein_coding Interval_118832 chr4 133940505 133941797 + 0 NA Intergenic Intergenic 26740 ENSMUSG00000003038.15 ENSMUSG00000003038 ENSMUST00000136859 Hmgn2 protein_coding Interval_21501 chr10 128946724 128948232 + 0 NA intron (ENSMUSG00000025348.9, intron 15 of 24) protein_coding-intron (ENSMUSG00000025348.9, intron 15 of 24) 2573 ENSMUSG00000088768.1 ENSMUSG00000088768 ENSMUST00000158143 Gm25494 snRNA Interval_65481 chr16 22630365 22630589 + 0 NA intron (ENSMUSG00000022861.17, intron 1 of 5) protein_coding-intron (ENSMUSG00000022861.17, intron 1 of 23) 25151 ENSMUSG00000098448.1 ENSMUSG00000098448 ENSMUST00000184329 Mir6362 miRNA Interval_127536 chr5 104906024 104907226 + 0 NA Intergenic Intergenic -30026 ENSMUSG00000096561.1 ENSMUSG00000096561 ENSMUST00000178720 Gm24097 snRNA Interval_109640 chr3 145641168 145641493 + 0 NA Intergenic Intergenic 8651 ENSMUSG00000028195.4 ENSMUSG00000028195 ENSMUST00000029846 Ccn1 protein_coding Interval_146775 chr7 50529571 50530657 + 0 NA intron (ENSMUSG00000085265.1, intron 3 of 3) protein_coding-intron (ENSMUSG00000055409.14, intron 13 of 19) 45857 ENSMUSG00000085265.1 ENSMUSG00000085265 ENSMUST00000136672 Nell1os antisense Interval_70676 chr17 12967529 12968216 + 0 NA exon (ENSMUSG00000060475.13, exon 8 of 8) protein_coding-exon (ENSMUSG00000060475.13, exon 8 of 8) 5104 ENSMUSG00000089695.2 ENSMUSG00000089695 ENSMUST00000160654 Gm15946 processed_pseudogene Interval_57661 chr15 14108350 14108808 + 0 NA Intergenic Intergenic -34376 ENSMUSG00000115551.1 ENSMUSG00000115551 ENSMUST00000228924 Gm49115 processed_pseudogene Interval_172507 chrX 22099154 22099633 + 0 NA Intergenic Intergenic 106130 ENSMUSG00000082175.1 ENSMUSG00000082175 ENSMUST00000120571 Gm14563 processed_pseudogene Interval_38351 chr12 77660156 77660382 + 0 NA Intergenic Intergenic -22792 ENSMUSG00000111903.1 ENSMUSG00000111903 ENSMUST00000219952 4930458K08Rik lincRNA Interval_16662 chr10 66911214 66911968 + 0 NA TTS (ENSMUSG00000097134.2) lincRNA-TTS (ENSMUSG00000097134.2) 6148 ENSMUSG00000097134.2 ENSMUSG00000097134 ENSMUST00000219021 1110002J07Rik lincRNA Interval_65314 chr16 21460713 21461400 + 0 NA intron (ENSMUSG00000033653.18, intron 11 of 46) protein_coding-intron (ENSMUSG00000033653.18, intron 10 of 43) -72056 ENSMUSG00000033653.18 ENSMUSG00000033653 ENSMUST00000127903 Vps8 protein_coding Interval_137435 chr6 72276307 72276546 + 0 NA Intergenic Intergenic -28199 ENSMUSG00000056370.15 ENSMUSG00000056370 ENSMUST00000182765 Sftpb protein_coding Interval_80492 chr18 42708670 42709082 + 0 NA intron (ENSMUSG00000024500.20, intron 5 of 9) protein_coding-intron (ENSMUSG00000024500.20, intron 4 of 8) -86417 ENSMUSG00000117926.1 ENSMUSG00000117926 ENSMUST00000236808 C030004G16Rik lincRNA Interval_136966 chr6 65126175 65126517 + 0 NA intron (ENSMUSG00000029919.5, intron 4 of 5) protein_coding-intron (ENSMUSG00000029919.5, intron 4 of 5) -2225 ENSMUSG00000090939.1 ENSMUSG00000090939 ENSMUST00000164176 Gm17147 processed_pseudogene Interval_103686 chr3 51634410 51634654 + 0 NA Intergenic Intergenic 2396 ENSMUSG00000104166.1 ENSMUSG00000104166 ENSMUST00000194675 Gm38247 processed_pseudogene Interval_70688 chr17 13479423 13479791 + 0 NA Intergenic Intergenic -21347 ENSMUSG00000090211.3 ENSMUSG00000090211 ENSMUST00000160626 Gm16050 lincRNA Interval_37097 chr12 57945107 57945768 + 0 NA Intergenic Intergenic -5774 ENSMUSG00000112704.1 ENSMUSG00000112704 ENSMUST00000218373 Gm46329 lincRNA Interval_53058 chr14 54090829 54091037 + 0 NA intron (ENSMUSG00000104658.4, intron 2 of 2) antisense-intron (ENSMUSG00000104658.4, intron 2 of 2) 16028 ENSMUSG00000076867.2 ENSMUSG00000076867 ENSMUST00000103679 Trdv4 TR_V_gene Interval_167678 chr9 71861436 71861815 + 0 NA intron (ENSMUSG00000032228.16, intron 15 of 19) protein_coding-intron (ENSMUSG00000032228.16, intron 15 of 19) -6422 ENSMUSG00000102143.1 ENSMUSG00000102143 ENSMUST00000195551 Gm38057 TEC Interval_93189 chr2 71022888 71023347 + 0 NA intron (ENSMUSG00000041975.17, intron 1 of 10) protein_coding-intron (ENSMUSG00000041975.17, intron 1 of 5) -32627 ENSMUSG00000041966.18 ENSMUSG00000041966 ENSMUST00000132619 Dcaf17 protein_coding Interval_75750 chr17 71001654 71002884 + 0 NA promoter-TSS (ENSMUSG00000024048.15) protein_coding-promoter-TSS (ENSMUSG00000024048.15) -61 ENSMUSG00000117098.1 ENSMUSG00000117098 ENSMUST00000233417 Gm49909 protein_coding Interval_57051 chr15 5143311 5144644 + 0 NA promoter-TSS (ENSMUSG00000050697.9) protein_coding-promoter-TSS (ENSMUSG00000050697.9) 86 ENSMUSG00000050697.9 ENSMUSG00000050697 ENSMUST00000228218 Prkaa1 protein_coding Interval_1452 chr1 23654111 23654806 + 0 NA Intergenic Intergenic 79871 ENSMUSG00000099503.1 ENSMUSG00000099503 ENSMUST00000191140 Gm28822 lincRNA Interval_31973 chr11 104261506 104261936 + 0 NA intron (ENSMUSG00000018411.17, intron 1 of 5) protein_coding-intron (ENSMUSG00000018411.17, intron 1 of 11) -2360 ENSMUSG00000085134.1 ENSMUSG00000085134 ENSMUST00000137561 Gm11659 antisense Interval_65489 chr16 22717444 22717767 + 0 NA Intergenic Intergenic -31411 ENSMUSG00000116603.1 ENSMUSG00000116603 ENSMUST00000232508 Gm8118 processed_pseudogene Interval_160641 chr8 111266259 111266506 + 0 NA Intergenic Intergenic -7166 ENSMUSG00000003316.14 ENSMUSG00000003316 ENSMUST00000003404 Glg1 protein_coding Interval_122636 chr5 24377407 24378053 + 0 NA intron (ENSMUSG00000028978.12, intron 15 of 24) protein_coding-intron (ENSMUSG00000028978.12, intron 15 of 25) 5884 ENSMUSG00000086769.7 ENSMUSG00000086769 ENSMUST00000156403 Gm15587 antisense Interval_104944 chr3 79196830 79197656 + 0 NA TTS (ENSMUSG00000064693.1) snRNA-TTS (ENSMUSG00000064693.1) 869 ENSMUSG00000064693.1 ENSMUSG00000064693 ENSMUST00000082759 Gm24150 snRNA Interval_94180 chr2 84883066 84883358 + 0 NA intron (ENSMUSG00000050896.12, intron 1 of 2) protein_coding-intron (ENSMUSG00000050896.12, intron 1 of 2) 3498 ENSMUSG00000050896.12 ENSMUSG00000050896 ENSMUST00000151759 Rtn4rl2 protein_coding Interval_45317 chr13 54320194 54321183 + 0 NA intron (ENSMUSG00000113404.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000113404.1, intron 1 of 1) 7192 ENSMUSG00000113404.1 ENSMUSG00000113404 ENSMUST00000220818 Gm48622 lincRNA Interval_45020 chr13 51517894 51518488 + 0 NA intron (ENSMUSG00000021448.8, intron 1 of 11) protein_coding-intron (ENSMUSG00000021448.8, intron 1 of 11) 51296 ENSMUSG00000021448.8 ENSMUSG00000021448 ENSMUST00000221850 Shc3 protein_coding Interval_135742 chr6 46280148 46280509 + 0 NA intron (ENSMUSG00000039419.17, intron 2 of 4) protein_coding-intron (ENSMUSG00000039419.17, intron 10 of 23) -133428 ENSMUSG00000107442.1 ENSMUSG00000107442 ENSMUST00000203051 Gm43881 TEC Interval_157342 chr8 69701468 69702379 + 0 NA TTS (ENSMUSG00000054648.8) protein_coding-TTS (ENSMUSG00000054648.8) 14540 ENSMUSG00000054648.8 ENSMUSG00000054648 ENSMUST00000238311 Zfp869 protein_coding Interval_73910 chr17 45441063 45442326 + 0 NA TTS (ENSMUSG00000097119.2) bidirectional_promoter_lncRNA-TTS (ENSMUSG00000097119.2) 7863 ENSMUSG00000097119.2 ENSMUSG00000097119 ENSMUST00000233673 B230354K17Rik bidirectional_promoter_lncRNA Interval_163347 chr9 20988161 20988593 + 0 NA Intergenic Intergenic -14399 ENSMUSG00000043895.6 ENSMUSG00000043895 ENSMUST00000214333 S1pr2 protein_coding Interval_108980 chr3 133859832 133860584 + 0 NA intron (ENSMUSG00000097911.2, intron 1 of 2) antisense-intron (ENSMUSG00000097911.2, intron 1 of 2) -41690 ENSMUSG00000104645.1 ENSMUSG00000104645 ENSMUST00000200327 Gm30484 lincRNA Interval_74662 chr17 55758683 55758995 + 0 NA intron (ENSMUSG00000032915.6, intron 1 of 16) protein_coding-intron (ENSMUSG00000032915.6, intron 1 of 16) 8855 ENSMUSG00000032915.6 ENSMUSG00000032915 ENSMUST00000025004 Adgre4 protein_coding Interval_29561 chr11 84916098 84916844 + 0 NA promoter-TSS (ENSMUSG00000020526.12) protein_coding-promoter-TSS (ENSMUSG00000020526.12) -147 ENSMUSG00000020526.12 ENSMUSG00000020526 ENSMUST00000156046 Znhit3 protein_coding Interval_170622 chr9 109596942 109597396 + 0 NA Intergenic Intergenic -22945 ENSMUSG00000106495.1 ENSMUSG00000106495 ENSMUST00000198533 Gm42755 TEC Interval_147278 chr7 65430080 65431827 + 0 NA intron (ENSMUSG00000030516.14, intron 2 of 4) protein_coding-intron (ENSMUSG00000030516.14, intron 2 of 4) 29106 ENSMUSG00000108541.1 ENSMUSG00000108541 ENSMUST00000205496 Gm44795 processed_pseudogene Interval_74593 chr17 53583801 53584478 + 0 NA promoter-TSS (ENSMUSG00000000708.14) protein_coding-promoter-TSS (ENSMUSG00000000708.14) 14524 ENSMUSG00000096517.1 ENSMUSG00000096517 ENSMUST00000180049 Gm6919 processed_pseudogene Interval_44472 chr13 45097497 45098328 + 0 NA Intergenic Intergenic -2045 ENSMUSG00000113553.1 ENSMUSG00000113553 ENSMUST00000221244 Gm40932 lincRNA Interval_70080 chr17 5163775 5163978 + 0 NA intron (ENSMUSG00000069729.14, intron 4 of 19) protein_coding-intron (ENSMUSG00000069729.14, intron 4 of 18) -51766 ENSMUSG00000081783.2 ENSMUSG00000081783 ENSMUST00000122283 Gm15599 processed_pseudogene Interval_112914 chr4 46018379 46018612 + 0 NA intron (ENSMUSG00000035517.17, intron 11 of 16) protein_coding-intron (ENSMUSG00000035517.17, intron 11 of 16) -7606 ENSMUSG00000035517.17 ENSMUSG00000035517 ENSMUST00000155936 Tdrd7 protein_coding Interval_151045 chr7 118147664 118148317 + 0 NA intron (ENSMUSG00000030655.15, intron 49 of 60) protein_coding-intron (ENSMUSG00000030655.15, intron 51 of 62) -5490 ENSMUSG00000065874.1 ENSMUSG00000065874 ENSMUST00000083940 Gm25683 snoRNA Interval_54855 chr14 75850769 75851321 + 0 NA Intergenic Intergenic 3140 ENSMUSG00000065147.1 ENSMUSG00000065147 ENSMUST00000083213 Snora31 snoRNA Interval_17563 chr10 77795524 77795782 + 0 NA promoter-TSS (ENSMUSG00000096131.3) protein_coding-promoter-TSS (ENSMUSG00000096131.3) -577 ENSMUSG00000096131.3 ENSMUSG00000096131 ENSMUST00000172205 Gm9639 protein_coding Interval_11520 chr1 182408481 182409622 + 0 NA promoter-TSS (ENSMUSG00000073482.2) TEC-promoter-TSS (ENSMUSG00000073482.2) -30 ENSMUSG00000073482.2 ENSMUSG00000073482 ENSMUST00000097444 Gm10517 TEC Interval_150525 chr7 111911021 111911770 + 0 NA Intergenic Intergenic 35935 ENSMUSG00000065751.1 ENSMUSG00000065751 ENSMUST00000083817 Gm23345 snRNA Interval_80572 chr18 44336828 44337296 + 0 NA exon (ENSMUSG00000024471.12, exon 2 of 10) protein_coding-exon (ENSMUSG00000024471.12, exon 2 of 10) 2988 ENSMUSG00000024471.12 ENSMUSG00000024471 ENSMUST00000115498 Myot protein_coding Interval_98855 chr2 155604073 155605571 + 0 NA Intergenic Intergenic -10347 ENSMUSG00000087616.1 ENSMUSG00000087616 ENSMUST00000144649 Gm14257 antisense Interval_6854 chr1 120105422 120106158 + 0 NA Intergenic Intergenic 15147 ENSMUSG00000026385.16 ENSMUSG00000026385 ENSMUST00000149628 Dbi protein_coding Interval_106058 chr3 92080475 92082058 + 0 NA exon (ENSMUSG00000043165.7, exon 2 of 2) protein_coding-exon (ENSMUSG00000043165.7, exon 2 of 2) 1876 ENSMUSG00000043165.7 ENSMUSG00000043165 ENSMUST00000058150 Lor protein_coding Interval_150995 chr7 117478882 117479741 + 0 NA intron (ENSMUSG00000030657.11, intron 1 of 1) protein_coding-intron (ENSMUSG00000030657.11, intron 2 of 11) 3819 ENSMUSG00000030657.11 ENSMUSG00000030657 ENSMUST00000161889 Xylt1 protein_coding Interval_140151 chr6 114882283 114884230 + 0 NA intron (ENSMUSG00000030315.15, intron 3 of 5) protein_coding-intron (ENSMUSG00000030315.15, intron 2 of 4) 38560 ENSMUSG00000030315.15 ENSMUSG00000030315 ENSMUST00000204693 Vgll4 protein_coding Interval_140693 chr6 120615902 120616110 + 0 NA Intergenic Intergenic -35830 ENSMUSG00000107580.1 ENSMUSG00000107580 ENSMUST00000204159 Gm44124 TEC Interval_38526 chr12 79879058 79880023 + 0 NA Intergenic Intergenic 45954 ENSMUSG00000112765.1 ENSMUSG00000112765 ENSMUST00000219857 9430078K24Rik lincRNA Interval_104218 chr3 60837459 60837759 + 0 NA Intergenic Intergenic -23098 ENSMUSG00000102490.1 ENSMUSG00000102490 ENSMUST00000195595 Gm36985 processed_pseudogene Interval_134777 chr6 31412457 31412719 + 0 NA intron (ENSMUSG00000025609.15, intron 1 of 5) protein_coding-intron (ENSMUSG00000025609.15, intron 1 of 17) 13743 ENSMUSG00000025609.15 ENSMUSG00000025609 ENSMUST00000149859 Mkln1 protein_coding Interval_131829 chr5 140173841 140175327 + 0 NA promoter-TSS (ENSMUSG00000029554.15) protein_coding-promoter-TSS (ENSMUSG00000029554.15) 334 ENSMUSG00000029554.15 ENSMUSG00000029554 ENSMUST00000132832 Mad1l1 protein_coding Interval_116806 chr4 117373427 117374595 + 0 NA intron (ENSMUSG00000028677.19, intron 2 of 2) protein_coding-intron (ENSMUSG00000028677.19, intron 2 of 14) -71939 ENSMUSG00000086876.1 ENSMUSG00000086876 ENSMUST00000136115 Gm12828 antisense Interval_149596 chr7 99931486 99933099 + 0 NA intron (ENSMUSG00000058761.5, intron 4 of 5) protein_coding-intron (ENSMUSG00000058761.5, intron 4 of 5) -12770 ENSMUSG00000108823.1 ENSMUSG00000108823 ENSMUST00000208954 Gm18959 processed_pseudogene Interval_93225 chr2 71312065 71312328 + 0 NA TTS (ENSMUSG00000027010.16) protein_coding-TTS (ENSMUSG00000027010.16) -7587 ENSMUSG00000082190.1 ENSMUSG00000082190 ENSMUST00000117993 Gm13641 processed_pseudogene Interval_166535 chr9 60699278 60699828 + 0 NA Intergenic Intergenic -12019 ENSMUSG00000047766.15 ENSMUSG00000047766 ENSMUST00000132366 Lrrc49 protein_coding Interval_149871 chr7 102117185 102118640 + 0 NA Intergenic Intergenic -1084 ENSMUSG00000066279.3 ENSMUSG00000066279 ENSMUST00000211408 Chrna10 protein_coding Interval_149744 chr7 101089147 101089468 + 0 NA Intergenic Intergenic -27832 ENSMUSG00000109171.1 ENSMUSG00000109171 ENSMUST00000207053 Gm5735 processed_pseudogene Interval_13919 chr10 24630618 24631310 + 0 NA Intergenic Intergenic 35238 ENSMUSG00000019997.11 ENSMUSG00000019997 ENSMUST00000129142 Ccn2 protein_coding Interval_157508 chr8 71009020 71009268 + 0 NA intron (ENSMUSG00000101854.2, intron 4 of 4) lincRNA-intron (ENSMUSG00000101854.2, intron 2 of 2) -17648 ENSMUSG00000110554.1 ENSMUSG00000110554 ENSMUST00000212780 Gm35256 lincRNA Interval_67140 chr16 43864472 43865017 + 0 NA intron (ENSMUSG00000022704.16, intron 7 of 7) protein_coding-intron (ENSMUSG00000022704.16, intron 7 of 7) 16469 ENSMUSG00000022704.16 ENSMUSG00000022704 ENSMUST00000124674 Qtrt2 protein_coding Interval_125999 chr5 76751818 76752065 + 0 NA promoter-TSS (ENSMUSG00000036377.19) protein_coding-promoter-TSS (ENSMUSG00000036377.19) -9428 ENSMUSG00000083874.1 ENSMUSG00000083874 ENSMUST00000121248 Gm7494 processed_pseudogene Interval_58128 chr15 28208889 28210216 + 0 NA intron (ENSMUSG00000022262.8, intron 1 of 78) protein_coding-intron (ENSMUSG00000022262.8, intron 1 of 78) 5800 ENSMUSG00000022262.8 ENSMUSG00000022262 ENSMUST00000067048 Dnah5 protein_coding Interval_152641 chr7 135641480 135642258 + 0 NA intron (ENSMUSG00000097471.8, intron 4 of 4) protein_coding-intron (ENSMUSG00000041836.10, intron 2 of 20) 10414 ENSMUSG00000097471.8 ENSMUSG00000097471 ENSMUST00000210953 5830432E09Rik antisense Interval_52367 chr14 45433502 45434617 + 0 NA Intergenic Intergenic 10930 ENSMUSG00000115209.1 ENSMUSG00000115209 ENSMUST00000228291 Gm34250 lincRNA Interval_137833 chr6 82824140 82824499 + 0 NA intron (ENSMUSG00000108015.3, intron 1 of 3) lincRNA-intron (ENSMUSG00000108015.3, intron 1 of 3) -7115 ENSMUSG00000108015.3 ENSMUSG00000108015 ENSMUST00000203038 Gm32591 lincRNA Interval_83169 chr18 82512774 82514082 + 0 NA exon (ENSMUSG00000041607.17, exon 3 of 3) protein_coding-exon (ENSMUSG00000041607.17, exon 3 of 3) 10593 ENSMUSG00000061684.6 ENSMUSG00000061684 ENSMUST00000130005 Rpl21-ps8 processed_pseudogene Interval_149604 chr7 99990195 99991615 + 0 NA Intergenic Intergenic -5871 ENSMUSG00000109384.1 ENSMUSG00000109384 ENSMUST00000208132 Gm17931 processed_pseudogene Interval_129556 chr5 120906943 120909171 + 0 NA promoter-TSS (ENSMUSG00000052776.10) protein_coding-promoter-TSS (ENSMUSG00000052776.10) -536 ENSMUSG00000052776.10 ENSMUSG00000052776 ENSMUST00000080322 Oas1a protein_coding Interval_25221 chr11 45539172 45539686 + 0 NA Intergenic Intergenic -99954 ENSMUSG00000077320.1 ENSMUSG00000077320 ENSMUST00000104132 Gm22284 snoRNA Interval_28690 chr11 77765370 77767159 + 0 NA promoter-TSS (ENSMUSG00000000631.20) protein_coding-promoter-TSS (ENSMUSG00000000631.20) 19223 ENSMUSG00000081924.1 ENSMUSG00000081924 ENSMUST00000117231 Gm11191 processed_pseudogene Interval_35138 chr12 17523810 17524547 + 0 NA Intergenic Intergenic -20794 ENSMUSG00000011179.8 ENSMUSG00000011179 ENSMUST00000222250 Odc1 protein_coding Interval_160951 chr8 116125120 116125363 + 0 NA Intergenic Intergenic 62128 ENSMUSG00000110476.1 ENSMUSG00000110476 ENSMUST00000212419 4930422C21Rik lincRNA Interval_9324 chr1 156240951 156242575 + 0 NA Intergenic Intergenic -14470 ENSMUSG00000102932.1 ENSMUSG00000102932 ENSMUST00000193704 Gm38113 processed_pseudogene Interval_105365 chr3 85561876 85562299 + 0 NA intron (ENSMUSG00000085527.1, intron 1 of 1) sense_intronic-intron (ENSMUSG00000085527.1, intron 1 of 1) -8698 ENSMUSG00000106422.1 ENSMUSG00000106422 ENSMUST00000199844 Gm42812 lincRNA Interval_128495 chr5 113650164 113650921 + 0 NA promoter-TSS (ENSMUSG00000042190.12) protein_coding-promoter-TSS (ENSMUSG00000042190.12) -146 ENSMUSG00000042190.12 ENSMUSG00000042190 ENSMUST00000151460 Cmklr1 protein_coding Interval_78131 chr18 9001400 9001763 + 0 NA Intergenic Intergenic 33837 ENSMUSG00000117549.1 ENSMUSG00000117549 ENSMUST00000234292 Gm7523 processed_pseudogene Interval_174146 chrX 136269701 136271475 + 0 NA promoter-TSS (ENSMUSG00000046432.12) protein_coding-promoter-TSS (ENSMUSG00000046432.12) 335 ENSMUSG00000046432.12 ENSMUSG00000046432 ENSMUST00000113113 Bex3 protein_coding Interval_38389 chr12 78537504 78538278 + 0 NA intron (ENSMUSG00000047454.12, intron 10 of 23) protein_coding-intron (ENSMUSG00000047454.12, intron 10 of 23) 96296 ENSMUSG00000112391.1 ENSMUSG00000112391 ENSMUST00000218041 Gm48230 TEC Interval_92551 chr2 60542964 60543876 + 0 NA intron (ENSMUSG00000054580.14, intron 1 of 1) protein_coding-intron (ENSMUSG00000054580.14, intron 1 of 29) -7339 ENSMUSG00000086578.2 ENSMUSG00000086578 ENSMUST00000126361 Gm13583 antisense Interval_170449 chr9 108048677 108049715 + 0 NA promoter-TSS (ENSMUSG00000070284.10) protein_coding-promoter-TSS (ENSMUSG00000070284.10) -73 ENSMUSG00000070284.10 ENSMUSG00000070284 ENSMUST00000145330 Gmppb protein_coding Interval_168741 chr9 86583841 86584134 + 0 NA intron (ENSMUSG00000032418.15, intron 7 of 7) protein_coding-intron (ENSMUSG00000032418.15, intron 13 of 13) 11996 ENSMUSG00000032417.10 ENSMUSG00000032417 ENSMUST00000179212 Rwdd2a protein_coding Interval_48040 chr13 95512541 95513451 + 0 NA exon (ENSMUSG00000021678.9, exon 2 of 2) protein_coding-exon (ENSMUSG00000021678.9, exon 2 of 2) 12231 ENSMUSG00000021678.9 ENSMUSG00000021678 ENSMUST00000022185 F2rl1 protein_coding Interval_44683 chr13 47134298 47135036 + 0 NA intron (ENSMUSG00000038068.15, intron 1 of 7) protein_coding-intron (ENSMUSG00000038068.15, intron 1 of 7) 14003 ENSMUSG00000114961.1 ENSMUSG00000114961 ENSMUST00000224519 A930002C04Rik antisense Interval_149085 chr7 92990307 92990535 + 0 NA intron (ENSMUSG00000108994.1, intron 2 of 3) transcribed_unprocessed_pseudogene-intron (ENSMUSG00000108994.1, intron 2 of 3) 10545 ENSMUSG00000108994.1 ENSMUSG00000108994 ENSMUST00000207656 Gm31663 transcribed_unprocessed_pseudogene Interval_54293 chr14 67228915 67229831 + 0 NA Intergenic Intergenic 3756 ENSMUSG00000093744.1 ENSMUSG00000093744 ENSMUST00000175861 Gm20675 lincRNA Interval_82212 chr18 69196164 69197323 + 0 NA promoter-TSS (ENSMUSG00000110211.1) lincRNA-promoter-TSS (ENSMUSG00000110211.1) -999 ENSMUSG00000110211.1 ENSMUSG00000110211 ENSMUST00000211216 Gm31294 lincRNA Interval_70417 chr17 9982842 9983304 + 0 NA Intergenic Intergenic 35236 ENSMUSG00000117206.1 ENSMUSG00000117206 ENSMUST00000233132 Gm49809 processed_pseudogene Interval_28261 chr11 74760943 74761473 + 0 NA Intergenic Intergenic -28838 ENSMUSG00000081252.1 ENSMUSG00000081252 ENSMUST00000118534 Gm16032 processed_pseudogene Interval_17008 chr10 70393061 70393276 + 0 NA Intergenic Intergenic 22413 ENSMUSG00000112884.1 ENSMUSG00000112884 ENSMUST00000219437 Gm47946 lincRNA Interval_95073 chr2 103718664 103719634 + 0 NA TTS (ENSMUSG00000032724.5) protein_coding-TTS (ENSMUSG00000032724.5) 4114 ENSMUSG00000032724.5 ENSMUSG00000032724 ENSMUST00000131122 Abtb2 protein_coding Interval_1648 chr1 30778638 30780752 + 0 NA Intergenic Intergenic 10008 ENSMUSG00000100261.1 ENSMUSG00000100261 ENSMUST00000188572 Gm6473 unprocessed_pseudogene Interval_2577 chr1 40767885 40768940 + 0 NA exon (ENSMUSG00000026062.12, exon 12 of 12) protein_coding-exon (ENSMUSG00000026062.12, exon 12 of 12) -2973 ENSMUSG00000103270.1 ENSMUSG00000103270 ENSMUST00000195134 Gm37915 antisense Interval_10471 chr1 171187860 171188550 + 0 NA intron (ENSMUSG00000038370.6, intron 1 of 2) protein_coding-intron (ENSMUSG00000038370.6, intron 1 of 2) 8063 ENSMUSG00000038370.6 ENSMUSG00000038370 ENSMUST00000111332 Pcp4l1 protein_coding Interval_28209 chr11 74391408 74391594 + 0 NA intron (ENSMUSG00000038807.19, intron 23 of 25) protein_coding-intron (ENSMUSG00000038807.19, intron 23 of 25) 29432 ENSMUSG00000058275.3 ENSMUSG00000058275 ENSMUST00000077794 Olfr412 protein_coding Interval_166906 chr9 63843867 63844385 + 0 NA Intergenic Intergenic -42329 ENSMUSG00000111137.1 ENSMUSG00000111137 ENSMUST00000215986 Gm2553 processed_pseudogene Interval_47005 chr13 74245426 74246149 + 0 NA intron (ENSMUSG00000021575.16, intron 1 of 3) protein_coding-intron (ENSMUSG00000021575.16, intron 4 of 10) 19678 ENSMUSG00000021575.16 ENSMUSG00000021575 ENSMUST00000222032 Ahrr protein_coding Interval_117639 chr4 125200520 125201063 + 0 NA Intergenic Intergenic -27806 ENSMUSG00000087010.1 ENSMUSG00000087010 ENSMUST00000130055 1700041M05Rik lincRNA Interval_107725 chr3 112088293 112089169 + 0 NA Intergenic Intergenic 110310 ENSMUSG00000089017.1 ENSMUSG00000089017 ENSMUST00000158392 Gm25519 snoRNA Interval_259 KZ289068.1 352465 353351 + 0 NA NA NA NA NA Interval_160647 chr8 111291486 111291825 + 0 NA intron (ENSMUSG00000033596.5, intron 3 of 8) protein_coding-intron (ENSMUSG00000033596.5, intron 3 of 12) 8536 ENSMUSG00000033596.5 ENSMUSG00000033596 ENSMUST00000212958 Rfwd3 protein_coding Interval_99877 chr2 165470112 165470613 + 0 NA intron (ENSMUSG00000018459.15, intron 1 of 2) protein_coding-intron (ENSMUSG00000018459.15, intron 1 of 12) 2837 ENSMUSG00000018459.15 ENSMUSG00000018459 ENSMUST00000147107 Slc13a3 protein_coding Interval_16794 chr10 68206275 68206577 + 0 NA intron (ENSMUSG00000019947.10, intron 3 of 9) protein_coding-intron (ENSMUSG00000019947.10, intron 3 of 10) 72314 ENSMUSG00000019947.10 ENSMUSG00000019947 ENSMUST00000218425 Arid5b protein_coding Interval_59784 chr15 59221705 59222627 + 0 NA Intergenic Intergenic 11258 ENSMUSG00000025922.9 ENSMUSG00000025922 ENSMUST00000027054 Rpl7-ps8 processed_pseudogene Interval_134939 chr6 33950350 33950689 + 0 NA intron (ENSMUSG00000029763.17, intron 17 of 17) protein_coding-intron (ENSMUSG00000029763.17, intron 17 of 17) 41892 ENSMUSG00000087441.1 ENSMUSG00000087441 ENSMUST00000155496 Gm13853 lincRNA Interval_14828 chr10 40332727 40333731 + 0 NA promoter-TSS (ENSMUSG00000111788.1) processed_pseudogene-promoter-TSS (ENSMUSG00000111788.1) -722 ENSMUSG00000111788.1 ENSMUSG00000111788 ENSMUST00000216371 Gm8948 processed_pseudogene Interval_64167 chr16 8797467 8798624 + 0 NA Intergenic Intergenic -31769 ENSMUSG00000084737.1 ENSMUSG00000084737 ENSMUST00000122788 Gm25805 snRNA Interval_139811 chr6 108954237 108955421 + 0 NA Intergenic Intergenic 72825 ENSMUSG00000107751.1 ENSMUSG00000107751 ENSMUST00000203838 Gm6749 processed_pseudogene Interval_122330 chr5 21389961 21390348 + 0 NA intron (ENSMUSG00000064280.14, intron 2 of 18) protein_coding-intron (ENSMUSG00000064280.14, intron 2 of 7) 17512 ENSMUSG00000039899.5 ENSMUSG00000039899 ENSMUST00000035799 Fgl2 protein_coding Interval_160764 chr8 112010871 112012389 + 0 NA promoter-TSS (ENSMUSG00000031948.14) protein_coding-promoter-TSS (ENSMUSG00000031948.14) 228 ENSMUSG00000033430.10 ENSMUSG00000033430 ENSMUST00000212732 Terf2ip protein_coding Interval_97343 chr2 135067147 135067590 + 0 NA intron (ENSMUSG00000051177.16, intron 3 of 6) protein_coding-intron (ENSMUSG00000051177.16, intron 3 of 31) 148248 ENSMUSG00000085247.1 ENSMUSG00000085247 ENSMUST00000138303 4930545L23Rik antisense Interval_92580 chr2 60850369 60851490 + 0 NA intron (ENSMUSG00000026970.16, intron 1 of 13) protein_coding-intron (ENSMUSG00000026970.16, intron 1 of 13) 30509 ENSMUSG00000026970.16 ENSMUSG00000026970 ENSMUST00000128866 Rbms1 protein_coding Interval_104173 chr3 59563209 59564194 + 0 NA Intergenic Intergenic -28475 ENSMUSG00000103598.1 ENSMUSG00000103598 ENSMUST00000192696 Gm4856 unprocessed_pseudogene Interval_21751 chr11 4117884 4119062 + 0 NA intron (ENSMUSG00000003585.13, intron 1 of 1) protein_coding-intron (ENSMUSG00000003585.13, intron 1 of 11) 4942 ENSMUSG00000003585.13 ENSMUSG00000003585 ENSMUST00000136420 Sec14l2 protein_coding Interval_144869 chr7 28692502 28694700 + 0 NA promoter-TSS (ENSMUSG00000037463.14) protein_coding-promoter-TSS (ENSMUSG00000037463.14) 562 ENSMUSG00000037463.14 ENSMUSG00000037463 ENSMUST00000127368 Fbxo27 protein_coding Interval_105515 chr3 87173759 87175762 + 0 NA promoter-TSS (ENSMUSG00000041734.15) protein_coding-promoter-TSS (ENSMUSG00000041734.15) -60 ENSMUSG00000041734.15 ENSMUSG00000041734 ENSMUST00000041732 Kirrel protein_coding Interval_123573 chr5 33571266 33571478 + 0 NA Intergenic Intergenic 57690 ENSMUSG00000037339.17 ENSMUSG00000037339 ENSMUST00000140043 Fam53a protein_coding Interval_170060 chr9 104131157 104131747 + 0 NA Intergenic Intergenic 8702 ENSMUSG00000090150.10 ENSMUSG00000090150 ENSMUST00000128714 Acad11 protein_coding Interval_47847 chr13 93728049 93728646 + 0 NA promoter-TSS (ENSMUSG00000085202.1) processed_pseudogene-promoter-TSS (ENSMUSG00000085202.1) -645 ENSMUSG00000085202.1 ENSMUSG00000085202 ENSMUST00000122949 Gm15620 processed_pseudogene Interval_13764 chr10 21896812 21897039 + 0 NA intron (ENSMUSG00000019970.15, intron 1 of 13) protein_coding-intron (ENSMUSG00000019970.15, intron 1 of 13) -18033 ENSMUSG00000080607.1 ENSMUSG00000080607 ENSMUST00000116957 Gm23839 snoRNA Interval_37348 chr12 65346535 65347889 + 0 NA Intergenic Intergenic 58758 ENSMUSG00000077590.1 ENSMUSG00000077590 ENSMUST00000104402 Gm26015 snoRNA Interval_27142 chr11 63270849 63272679 + 0 NA Intergenic Intergenic -30289 ENSMUSG00000083052.1 ENSMUSG00000083052 ENSMUST00000117347 Gm12285 processed_pseudogene Interval_149508 chr7 99229408 99229610 + 0 NA intron (ENSMUSG00000052396.7, intron 2 of 2) protein_coding-intron (ENSMUSG00000052396.7, intron 2 of 5) 9085 ENSMUSG00000052396.7 ENSMUSG00000052396 ENSMUST00000132343 Mogat2 protein_coding Interval_59706 chr15 58765486 58765984 + 0 NA Intergenic Intergenic 16216 ENSMUSG00000093677.1 ENSMUSG00000093677 ENSMUST00000176387 Gm20712 sense_overlapping Interval_80766 chr18 46927967 46928224 + 0 NA intron (ENSMUSG00000073568.2, intron 3 of 4) protein_coding-intron (ENSMUSG00000073568.2, intron 2 of 3) 6280 ENSMUSG00000073568.2 ENSMUSG00000073568 ENSMUST00000097580 Arl14epl protein_coding Interval_89051 chr2 15054481 15055774 + 0 NA promoter-TSS (ENSMUSG00000017418.14) protein_coding-promoter-TSS (ENSMUSG00000017418.14) -196 ENSMUSG00000017418.14 ENSMUSG00000017418 ENSMUST00000193883 Arl5b protein_coding Interval_94795 chr2 94390747 94391555 + 0 NA intron (ENSMUSG00000027194.16, intron 1 of 24) protein_coding-intron (ENSMUSG00000027194.16, intron 1 of 19) -6053 ENSMUSG00000081476.1 ENSMUSG00000081476 ENSMUST00000117207 Itpa-ps1 processed_pseudogene Interval_135996 chr6 49324581 49325035 + 0 NA intron (ENSMUSG00000050786.8, intron 1 of 3) protein_coding-intron (ENSMUSG00000050786.8, intron 1 of 2) 5501 ENSMUSG00000050786.8 ENSMUSG00000050786 ENSMUST00000114491 Ccdc126 protein_coding Interval_160129 chr8 106617380 106620354 + 0 NA intron (ENSMUSG00000000303.12, intron 2 of 16) protein_coding-intron (ENSMUSG00000000303.12, intron 2 of 15) 15488 ENSMUSG00000000303.12 ENSMUSG00000000303 ENSMUST00000136580 Cdh1 protein_coding Interval_4024 chr1 66681041 66681353 + 0 NA intron (ENSMUSG00000055567.18, intron 58 of 63) protein_coding-intron (ENSMUSG00000055567.18, intron 59 of 64) 11159 ENSMUSG00000103375.1 ENSMUSG00000103375 ENSMUST00000192513 Gm37181 TEC Interval_75064 chr17 62788434 62789221 + 0 NA intron (ENSMUSG00000048915.12, intron 1 of 3) protein_coding-intron (ENSMUSG00000048915.12, intron 1 of 4) 92317 ENSMUSG00000048915.12 ENSMUSG00000048915 ENSMUST00000078839 Efna5 protein_coding Interval_132573 chr5 146406322 146406540 + 0 NA intron (ENSMUSG00000029636.11, intron 1 of 9) protein_coding-intron (ENSMUSG00000029636.11, intron 1 of 9) -49178 ENSMUSG00000029636.11 ENSMUSG00000029636 ENSMUST00000238592 Wasf3 protein_coding Interval_122582 chr5 23923069 23923870 + 0 NA promoter-TSS (ENSMUSG00000028995.14) protein_coding-promoter-TSS (ENSMUSG00000028995.14) -47026 ENSMUSG00000118576.1 ENSMUSG00000118576 ENSMUST00000239129 AC117663.1 unprocessed_pseudogene Interval_10111 chr1 165868869 165869295 + 0 NA TTS (ENSMUSG00000005763.15) protein_coding-TTS (ENSMUSG00000005763.15) 11078 ENSMUSG00000026565.18 ENSMUSG00000026565 ENSMUST00000176800 Pou2f1 protein_coding Interval_48949 chr13 105493587 105494069 + 0 NA Intergenic Intergenic 50189 ENSMUSG00000021721.5 ENSMUSG00000021721 ENSMUST00000022235 Htr1a protein_coding Interval_95890 chr2 118110442 118112195 + 0 NA promoter-TSS (ENSMUSG00000040152.8) protein_coding-promoter-TSS (ENSMUSG00000040152.8) -116 ENSMUSG00000087203.7 ENSMUSG00000087203 ENSMUST00000138764 Gm13986 processed_transcript Interval_165251 chr9 45784884 45785170 + 0 NA exon (ENSMUSG00000043987.18, exon 13 of 32) protein_coding-exon (ENSMUSG00000043987.18, exon 13 of 32) 9239 ENSMUSG00000043987.18 ENSMUSG00000043987 ENSMUST00000214868 Cep164 protein_coding Interval_156278 chr8 46874085 46874314 + 0 NA Intergenic Intergenic -40287 ENSMUSG00000110414.1 ENSMUSG00000110414 ENSMUST00000209717 Gm45481 TEC Interval_90112 chr2 28164989 28165458 + 0 NA Intergenic Intergenic -27769 ENSMUSG00000026833.18 ENSMUSG00000026833 ENSMUST00000028177 Olfm1 protein_coding Interval_137633 chr6 76954503 76954818 + 0 NA intron (ENSMUSG00000063063.12, intron 14 of 18) protein_coding-intron (ENSMUSG00000063063.12, intron 13 of 17) 189283 ENSMUSG00000063063.12 ENSMUSG00000063063 ENSMUST00000160252 Ctnna2 protein_coding Interval_171445 chr9 118397041 118398260 + 0 NA Intergenic Intergenic 5652 ENSMUSG00000103968.1 ENSMUSG00000103968 ENSMUST00000193035 2610509F24Rik TEC Interval_4404 chr1 73940760 73941095 + 0 NA promoter-TSS (ENSMUSG00000055322.16) protein_coding-promoter-TSS (ENSMUSG00000055322.16) -85352 ENSMUSG00000098504.1 ENSMUSG00000098504 ENSMUST00000183826 Mir6351 miRNA Interval_76979 chr17 85349018 85349869 + 0 NA intron (ENSMUSG00000071037.6, intron 3 of 10) protein_coding-intron (ENSMUSG00000071037.6, intron 3 of 10) -149190 ENSMUSG00000097803.1 ENSMUSG00000097803 ENSMUST00000181130 Rpl31-ps16 processed_pseudogene Interval_169946 chr9 103133607 103135221 + 0 NA intron (ENSMUSG00000032549.7, intron 1 of 3) protein_coding-intron (ENSMUSG00000032549.7, intron 1 of 7) 14046 ENSMUSG00000102461.1 ENSMUSG00000102461 ENSMUST00000195473 Gm37166 TEC Interval_93381 chr2 72529687 72530101 + 0 NA Intergenic Intergenic -15318 ENSMUSG00000081538.1 ENSMUSG00000081538 ENSMUST00000118906 Rps13-ps8 processed_pseudogene Interval_89310 chr2 19198867 19199677 + 0 NA promoter-TSS (ENSMUSG00000037683.14) protein_coding-promoter-TSS (ENSMUSG00000037683.14) -30 ENSMUSG00000037683.14 ENSMUSG00000037683 ENSMUST00000049255 Armc3 protein_coding Interval_133529 chr6 6172812 6174781 + 0 NA intron (ENSMUSG00000015112.15, intron 3 of 17) protein_coding-intron (ENSMUSG00000015112.15, intron 3 of 17) 155 ENSMUSG00000015112.15 ENSMUSG00000015112 ENSMUST00000177698 Slc25a13 protein_coding Interval_60111 chr15 65836922 65837563 + 0 NA intron (ENSMUSG00000015002.18, intron 6 of 22) protein_coding-intron (ENSMUSG00000015002.18, intron 6 of 22) -13879 ENSMUSG00000015002.18 ENSMUSG00000015002 ENSMUST00000174749 Efr3a protein_coding Interval_96730 chr2 127530114 127531452 + 0 NA intron (ENSMUSG00000027376.15, intron 17 of 23) protein_coding-intron (ENSMUSG00000027376.15, intron 17 of 23) -8689 ENSMUSG00000079056.12 ENSMUSG00000079056 ENSMUST00000137625 Kcnip3 protein_coding Interval_139871 chr6 112179430 112179914 + 0 NA Intergenic Intergenic -31036 ENSMUSG00000100219.1 ENSMUSG00000100219 ENSMUST00000186102 1700054K19Rik lincRNA Interval_161174 chr8 118155047 118155450 + 0 NA Intergenic Intergenic 34294 ENSMUSG00000065028.1 ENSMUSG00000065028 ENSMUST00000083094 Gm25200 snoRNA Interval_25138 chr11 44489242 44490109 + 0 NA Intergenic Intergenic 10468 ENSMUSG00000082750.1 ENSMUSG00000082750 ENSMUST00000119188 Gm12156 processed_pseudogene Interval_131758 chr5 139702547 139703529 + 0 NA Intergenic Intergenic 1391 ENSMUSG00000104637.1 ENSMUSG00000104637 ENSMUST00000198319 Gm42424 processed_pseudogene Interval_45334 chr13 54506744 54507147 + 0 NA intron (ENSMUSG00000043183.18, intron 1 of 2) protein_coding-intron (ENSMUSG00000043183.18, intron 1 of 8) 3141 ENSMUSG00000043183.18 ENSMUSG00000043183 ENSMUST00000126506 Simc1 protein_coding Interval_88427 chr2 5003351 5003547 + 0 NA TTS (ENSMUSG00000026669.14) protein_coding-TTS (ENSMUSG00000026669.14) -8611 ENSMUSG00000026669.14 ENSMUSG00000026669 ENSMUST00000125851 Mcm10 protein_coding Interval_2616 chr1 42261853 42262073 + 0 NA exon (ENSMUSG00000101299.2, exon 1 of 1) lincRNA-exon (ENSMUSG00000101299.2, exon 1 of 1) 106 ENSMUSG00000101299.2 ENSMUSG00000101299 ENSMUST00000209336 Gm28175 lincRNA Interval_85807 chr19 31972016 31972483 + 0 NA Intergenic Intergenic 22165 ENSMUSG00000118366.1 ENSMUSG00000118366 ENSMUST00000237398 9130016M20Rik lincRNA Interval_89080 chr2 15906687 15907974 + 0 NA intron (ENSMUSG00000075520.5, intron 25 of 38) protein_coding-intron (ENSMUSG00000075520.5, intron 25 of 38) -49595 ENSMUSG00000081245.2 ENSMUSG00000081245 ENSMUST00000120219 Gm6587 processed_pseudogene Interval_150502 chr7 111265656 111265878 + 0 NA Intergenic Intergenic -100531 ENSMUSG00000109808.1 ENSMUSG00000109808 ENSMUST00000211799 5430402P08Rik lincRNA Interval_93356 chr2 72298432 72298857 + 0 NA intron (ENSMUSG00000004085.14, intron 2 of 9) protein_coding-intron (ENSMUSG00000004085.14, intron 2 of 19) 12867 ENSMUSG00000004085.14 ENSMUSG00000004085 ENSMUST00000144111 Map3k20 protein_coding Interval_163546 chr9 22018142 22018765 + 0 NA exon (ENSMUSG00000003410.8, exon 7 of 7) protein_coding-exon (ENSMUSG00000003410.8, exon 7 of 7) 15647 ENSMUSG00000003402.14 ENSMUSG00000003402 ENSMUST00000214565 Prkcsh protein_coding Interval_78611 chr18 15171612 15171807 + 0 NA Intergenic Intergenic -23073 ENSMUSG00000117613.1 ENSMUSG00000117613 ENSMUST00000235045 Gm2629 lincRNA Interval_85478 chr19 27216536 27219179 + 0 NA intron (ENSMUSG00000024924.14, intron 1 of 17) protein_coding-intron (ENSMUSG00000024924.14, intron 1 of 17) 837 ENSMUSG00000024924.14 ENSMUSG00000024924 ENSMUST00000165761 Vldlr protein_coding Interval_126002 chr5 76766080 76766341 + 0 NA intron (ENSMUSG00000036377.19, intron 2 of 3) protein_coding-intron (ENSMUSG00000036377.19, intron 2 of 10) -23697 ENSMUSG00000083874.1 ENSMUSG00000083874 ENSMUST00000121248 Gm7494 processed_pseudogene Interval_53767 chr14 61619981 61620567 + 0 NA promoter-TSS (ENSMUSG00000097589.9) processed_transcript-promoter-TSS (ENSMUSG00000097589.9) 7063 ENSMUSG00000098183.1 ENSMUSG00000098183 ENSMUST00000182727 Gm27010 lincRNA Interval_10299 chr1 168281930 168282203 + 0 NA intron (ENSMUSG00000052534.15, intron 2 of 7) protein_coding-intron (ENSMUSG00000052534.15, intron 2 of 6) 55605 ENSMUSG00000103780.1 ENSMUSG00000103780 ENSMUST00000192272 Gm37524 TEC Interval_12621 chr10 3948750 3949796 + 0 NA intron (ENSMUSG00000040624.18, intron 12 of 15) protein_coding-intron (ENSMUSG00000040624.18, intron 12 of 15) -2182 ENSMUSG00000082605.1 ENSMUSG00000082605 ENSMUST00000119653 Gm16148 processed_pseudogene Interval_161370 chr8 120006396 120007114 + 0 NA intron (ENSMUSG00000031825.16, intron 1 of 14) protein_coding-intron (ENSMUSG00000031825.16, intron 1 of 14) -6453 ENSMUSG00000031825.16 ENSMUSG00000031825 ENSMUST00000144801 Crispld2 protein_coding Interval_85226 chr19 23972946 23973597 + 0 NA TTS (ENSMUSG00000071604.5) protein_coding-TTS (ENSMUSG00000071604.5) 3164 ENSMUSG00000071604.5 ENSMUSG00000071604 ENSMUST00000236123 Fam189a2 protein_coding Interval_124560 chr5 50762056 50762841 + 0 NA Intergenic Intergenic -75869 ENSMUSG00000105931.1 ENSMUSG00000105931 ENSMUST00000198568 Gm43014 TEC Interval_20674 chr10 120165788 120166383 + 0 NA intron (ENSMUSG00000020227.10, intron 7 of 11) protein_coding-intron (ENSMUSG00000020227.10, intron 7 of 11) -2564 ENSMUSG00000112894.1 ENSMUSG00000112894 ENSMUST00000220425 Gm47009 antisense Interval_164578 chr9 39230882 39231356 + 0 NA Intergenic Intergenic 18875 ENSMUSG00000096109.2 ENSMUSG00000096109 ENSMUST00000073248 Olfr1537 protein_coding Interval_28640 chr11 77492931 77494230 + 0 NA promoter-TSS (ENSMUSG00000011877.13) protein_coding-promoter-TSS (ENSMUSG00000011877.13) -5511 ENSMUSG00000011877.13 ENSMUSG00000011877 ENSMUST00000128796 Git1 protein_coding Interval_166706 chr9 62165463 62166255 + 0 NA Intergenic Intergenic -43265 ENSMUSG00000092696.1 ENSMUSG00000092696 ENSMUST00000174955 Mir5133 miRNA Interval_36923 chr12 55376090 55378212 + 0 NA exon (ENSMUSG00000021023.14, exon 5 of 7) protein_coding-exon (ENSMUSG00000021023.14, exon 5 of 7) -7071 ENSMUSG00000021024.14 ENSMUSG00000021024 ENSMUST00000162972 Psma6 protein_coding Interval_31912 chr11 103794768 103795823 + 0 NA intron (ENSMUSG00000000125.5, intron 1 of 4) protein_coding-intron (ENSMUSG00000000125.5, intron 1 of 4) 21145 ENSMUSG00000000125.5 ENSMUSG00000000125 ENSMUST00000000127 Wnt3 protein_coding Interval_78928 chr18 21945765 21946492 + 0 NA intron (ENSMUSG00000024306.13, intron 21 of 23) protein_coding-intron (ENSMUSG00000024306.13, intron 20 of 22) 225314 ENSMUSG00000024306.13 ENSMUSG00000024306 ENSMUST00000234661 Ccdc178 protein_coding Interval_73054 chr17 34450140 34450409 + 0 NA intron (ENSMUSG00000057246.16, intron 21 of 23) protein_coding-intron (ENSMUSG00000057246.16, intron 17 of 19) 1507 ENSMUSG00000057246.16 ENSMUSG00000057246 ENSMUST00000235202 BC051142 protein_coding Interval_5435 chr1 88756799 88757235 + 0 NA Intergenic Intergenic 2127 ENSMUSG00000097398.2 ENSMUSG00000097398 ENSMUST00000180596 Platr5 lincRNA Interval_20363 chr10 117124398 117125625 + 0 NA intron (ENSMUSG00000020170.4, intron 1 of 5) protein_coding-intron (ENSMUSG00000020170.4, intron 1 of 9) 23484 ENSMUSG00000020170.4 ENSMUSG00000020170 ENSMUST00000219104 Frs2 protein_coding Interval_68765 chr16 85813440 85813986 + 0 NA Intergenic Intergenic -5498 ENSMUSG00000116586.1 ENSMUSG00000116586 ENSMUST00000231357 4930556C24Rik lincRNA Interval_126868 chr5 96209496 96210937 + 0 NA promoter-TSS (ENSMUSG00000029486.13) protein_coding-promoter-TSS (ENSMUSG00000029486.13) 72 ENSMUSG00000029486.13 ENSMUSG00000029486 ENSMUST00000121477 Mrpl1 protein_coding Interval_126467 chr5 88726183 88726631 + 0 NA intron (ENSMUSG00000006262.15, intron 1 of 1) protein_coding-intron (ENSMUSG00000006262.15, intron 1 of 5) 5552 ENSMUSG00000006262.15 ENSMUSG00000006262 ENSMUST00000125171 Mob1b protein_coding Interval_167024 chr9 64638069 64638935 + 0 NA TTS (ENSMUSG00000036466.17) protein_coding-TTS (ENSMUSG00000036466.17) 87218 ENSMUSG00000004771.12 ENSMUSG00000004771 ENSMUST00000165083 Rab11a protein_coding Interval_85105 chr19 22883353 22884634 + 0 NA intron (ENSMUSG00000052387.16, intron 10 of 24) protein_coding-intron (ENSMUSG00000052387.16, intron 10 of 26) 133388 ENSMUSG00000065507.3 ENSMUSG00000065507 ENSMUST00000083573 Mir204 miRNA Interval_21613 chr11 3241994 3242431 + 0 NA intron (ENSMUSG00000020454.17, intron 16 of 18) protein_coding-intron (ENSMUSG00000020454.17, intron 15 of 17) 24180 ENSMUSG00000020457.13 ENSMUSG00000020457 ENSMUST00000132159 Drg1 protein_coding Interval_19985 chr10 111679761 111680443 + 0 NA Intergenic Intergenic -30290 ENSMUSG00000112357.1 ENSMUSG00000112357 ENSMUST00000217989 Gm47864 processed_pseudogene Interval_32721 chr11 109995019 109996210 + 0 NA exon (ENSMUSG00000020620.14, exon 1 of 39) protein_coding-exon (ENSMUSG00000020620.14, exon 1 of 39) 129 ENSMUSG00000020620.14 ENSMUSG00000020620 ENSMUST00000106669 Abca8b protein_coding Interval_137791 chr6 82531464 82531723 + 0 NA intron (ENSMUSG00000030043.11, intron 2 of 4) protein_coding-intron (ENSMUSG00000030043.11, intron 3 of 5) 129259 ENSMUSG00000030043.11 ENSMUSG00000030043 ENSMUST00000203775 Tacr1 protein_coding Interval_14810 chr10 40141481 40142523 + 0 NA exon (ENSMUSG00000019838.11, exon 1 of 6) protein_coding-exon (ENSMUSG00000019838.11, exon 1 of 6) 256 ENSMUSG00000019838.11 ENSMUSG00000019838 ENSMUST00000217252 Slc16a10 protein_coding Interval_161807 chr8 122933742 122934198 + 0 NA intron (ENSMUSG00000035569.17, intron 2 of 2) protein_coding-intron (ENSMUSG00000035569.17, intron 2 of 12) 48973 ENSMUSG00000065915.1 ENSMUSG00000065915 ENSMUST00000083981 Gm24445 snRNA Interval_6445 chr1 109034387 109035557 + 0 NA Intergenic Intergenic -36212 ENSMUSG00000100831.1 ENSMUSG00000100831 ENSMUST00000188261 Gm17847 processed_pseudogene Interval_145126 chr7 30188830 30189423 + 0 NA intron (ENSMUSG00000001794.13, intron 7 of 8) protein_coding-intron (ENSMUSG00000001794.13, intron 10 of 11) 3846 ENSMUSG00000001794.13 ENSMUSG00000001794 ENSMUST00000146852 Capns1 protein_coding Interval_74569 chr17 53491725 53492114 + 0 NA intron (ENSMUSG00000017831.8, intron 2 of 5) protein_coding-intron (ENSMUSG00000017831.8, intron 2 of 5) 9027 ENSMUSG00000117128.1 ENSMUSG00000117128 ENSMUST00000232747 Gm49915 antisense Interval_89935 chr2 26593745 26595346 + 0 NA TTS (ENSMUSG00000026922.13) protein_coding-TTS (ENSMUSG00000026922.13) -3125 ENSMUSG00000105799.1 ENSMUSG00000105799 ENSMUST00000199077 Mir126b miRNA Interval_75605 chr17 69255284 69255804 + 0 NA intron (ENSMUSG00000024044.19, intron 9 of 21) protein_coding-intron (ENSMUSG00000024044.19, intron 9 of 21) 21664 ENSMUSG00000100572.1 ENSMUSG00000100572 ENSMUST00000187090 2410021H03Rik antisense Interval_1841 chr1 34093681 34094269 + 0 NA intron (ENSMUSG00000026131.20, intron 1 of 3) protein_coding-intron (ENSMUSG00000026131.20, intron 2 of 97) 16748 ENSMUSG00000026131.20 ENSMUSG00000026131 ENSMUST00000182507 Dst protein_coding Interval_61507 chr15 82044082 82045223 + 0 NA intron (ENSMUSG00000063480.8, intron 1 of 2) protein_coding-intron (ENSMUSG00000063480.8, intron 1 of 1) 2867 ENSMUSG00000063480.8 ENSMUSG00000063480 ENSMUST00000166578 Snu13 protein_coding Interval_74967 chr17 58443121 58443460 + 0 NA Intergenic Intergenic -19035 ENSMUSG00000117281.1 ENSMUSG00000117281 ENSMUST00000233462 Gm49848 processed_pseudogene Interval_63724 chr15 103050485 103050943 + 0 NA Intergenic Intergenic 8592 ENSMUSG00000102297.1 ENSMUSG00000102297 ENSMUST00000193457 5730585A16Rik TEC Interval_159587 chr8 95661097 95661742 + 0 NA Intergenic Intergenic 13975 ENSMUSG00000110701.1 ENSMUSG00000110701 ENSMUST00000212264 Gm6013 processed_pseudogene Interval_44022 chr13 39907485 39908120 + 0 NA Intergenic Intergenic -23421 ENSMUSG00000114957.1 ENSMUSG00000114957 ENSMUST00000224937 Gm47316 lincRNA Interval_25446 chr11 48635884 48636215 + 0 NA Intergenic Intergenic 40770 ENSMUSG00000082250.1 ENSMUSG00000082250 ENSMUST00000121448 Gm12181 processed_pseudogene Interval_167469 chr9 69662164 69662638 + 0 NA Intergenic Intergenic -62647 ENSMUSG00000111096.1 ENSMUSG00000111096 ENSMUST00000215589 Gm47203 processed_pseudogene Interval_140992 chr6 123940756 123941044 + 0 NA intron (ENSMUSG00000093385.3, intron 7 of 7) transcribed_unprocessed_pseudogene-intron (ENSMUSG00000093385.3, intron 7 of 7) -1407 ENSMUSG00000108198.1 ENSMUSG00000108198 ENSMUST00000204775 Gm44823 unprocessed_pseudogene Interval_35999 chr12 33193570 33193846 + 0 NA TTS (ENSMUSG00000079143.3) antisense-TTS (ENSMUSG00000079143.3) 35146 ENSMUSG00000079143.3 ENSMUSG00000079143 ENSMUST00000155877 Atxn7l1os1 antisense Interval_119049 chr4 135229158 135229363 + 0 NA intron (ENSMUSG00000037242.8, intron 2 of 2) protein_coding-intron (ENSMUSG00000037242.8, intron 2 of 5) 43554 ENSMUSG00000037242.8 ENSMUSG00000037242 ENSMUST00000143370 Clic4 protein_coding Interval_116518 chr4 114979260 114979460 + 0 NA intron (ENSMUSG00000028719.8, intron 1 of 2) protein_coding-intron (ENSMUSG00000028719.8, intron 1 of 5) 7789 ENSMUSG00000028719.8 ENSMUSG00000028719 ENSMUST00000131014 Cmpk1 protein_coding Interval_83342 chr18 84396530 84396914 + 0 NA intron (ENSMUSG00000048410.17, intron 4 of 8) protein_coding-intron (ENSMUSG00000048410.17, intron 2 of 2) -20576 ENSMUSG00000102951.1 ENSMUSG00000102951 ENSMUST00000193817 Gm37216 TEC Interval_15424 chr10 46011868 46012586 + 0 NA Intergenic Intergenic 136922 ENSMUSG00000110841.1 ENSMUSG00000110841 ENSMUST00000217344 Gpx4-ps2 transcribed_processed_pseudogene Interval_145009 chr7 29399471 29399672 + 0 NA exon (ENSMUSG00000030583.16, exon 4 of 23) protein_coding-exon (ENSMUSG00000030583.16, exon 4 of 23) -21966 ENSMUSG00000030583.16 ENSMUSG00000030583 ENSMUST00000183085 Sipa1l3 protein_coding Interval_77897 chr18 5126184 5126944 + 0 NA Intergenic Intergenic 39167 ENSMUSG00000097888.2 ENSMUSG00000097888 ENSMUST00000180850 Gm26682 lincRNA Interval_101333 chr2 180522566 180523375 + 0 NA intron (ENSMUSG00000027568.9, intron 1 of 4) protein_coding-intron (ENSMUSG00000027568.9, intron 1 of 3) 22743 ENSMUSG00000027568.9 ENSMUSG00000027568 ENSMUST00000170448 Ntsr1 protein_coding Interval_74495 chr17 51986401 51987126 + 0 NA intron (ENSMUSG00000100150.2, intron 1 of 2) lincRNA-intron (ENSMUSG00000100150.2, intron 1 of 2) 348 ENSMUSG00000100150.2 ENSMUSG00000100150 ENSMUST00000191539 Gm19585 lincRNA Interval_86461 chr19 40730238 40730426 + 0 NA intron (ENSMUSG00000048120.16, intron 7 of 9) protein_coding-intron (ENSMUSG00000048120.16, intron 7 of 9) -18421 ENSMUSG00000108929.2 ENSMUSG00000108929 ENSMUST00000207791 Cc2d2b protein_coding Interval_19498 chr10 100512999 100513194 + 0 NA TTS (ENSMUSG00000019971.10) protein_coding-TTS (ENSMUSG00000019971.10) 25538 ENSMUSG00000019971.10 ENSMUSG00000019971 ENSMUST00000219889 Cep290 protein_coding Interval_64594 chr16 13563562 13564293 + 0 NA intron (ENSMUSG00000022685.9, intron 23 of 23) protein_coding-intron (ENSMUSG00000022685.9, intron 22 of 23) -32376 ENSMUSG00000077488.1 ENSMUSG00000077488 ENSMUST00000104300 Gm25276 snoRNA Interval_162102 chr8 125116491 125117040 + 0 NA intron (ENSMUSG00000043051.17, intron 4 of 13) protein_coding-intron (ENSMUSG00000043051.17, intron 3 of 12) 28778 ENSMUSG00000043051.17 ENSMUSG00000043051 ENSMUST00000126111 Disc1 protein_coding Interval_161280 chr8 119471460 119472340 + 0 NA TTS (ENSMUSG00000031837.14) protein_coding-TTS (ENSMUSG00000031837.14) 19468 ENSMUSG00000031837.14 ENSMUSG00000031837 ENSMUST00000148328 Necab2 protein_coding Interval_112573 chr4 43336296 43336695 + 0 NA intron (ENSMUSG00000028457.18, intron 13 of 28) protein_coding-intron (ENSMUSG00000028457.18, intron 13 of 14) 69310 ENSMUSG00000028457.18 ENSMUSG00000028457 ENSMUST00000102953 Atp8b5 protein_coding Interval_128457 chr5 113420081 113422951 + 0 NA Intergenic Intergenic 64222 ENSMUSG00000053873.1 ENSMUSG00000053873 ENSMUST00000066573 Aym1 protein_coding Interval_116012 chr4 106969135 106969872 + 0 NA intron (ENSMUSG00000061887.14, intron 1 of 4) protein_coding-intron (ENSMUSG00000061887.14, intron 4 of 17) 52996 ENSMUSG00000085581.1 ENSMUSG00000085581 ENSMUST00000129617 Gm12786 antisense Interval_82458 chr18 74207049 74208256 + 0 NA promoter-TSS (ENSMUSG00000036223.16) protein_coding-promoter-TSS (ENSMUSG00000036223.16) 95 ENSMUSG00000036223.16 ENSMUSG00000036223 ENSMUST00000237276 Ska1 protein_coding Interval_68779 chr16 86145940 86146242 + 0 NA intron (ENSMUSG00000116556.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000116556.1, intron 1 of 1) 4585 ENSMUSG00000116556.1 ENSMUSG00000116556 ENSMUST00000231250 1700007H22Rik lincRNA Interval_132024 chr5 142351531 142353473 + 0 NA Intergenic Intergenic -48995 ENSMUSG00000056493.9 ENSMUSG00000056493 ENSMUST00000072837 Foxk1 protein_coding Interval_123681 chr5 34480900 34481858 + 0 NA TTS (ENSMUSG00000098062.1) processed_pseudogene-TTS (ENSMUSG00000098062.1) 1143 ENSMUSG00000098062.1 ENSMUSG00000098062 ENSMUST00000182273 Gm26931 processed_pseudogene Interval_130011 chr5 123700340 123700935 + 0 NA exon (ENSMUSG00000029427.11, exon 14 of 14) protein_coding-exon (ENSMUSG00000029427.11, exon 14 of 14) 15862 ENSMUSG00000104694.1 ENSMUSG00000104694 ENSMUST00000198221 Gm43797 TEC Interval_112894 chr4 45855890 45856446 + 0 NA intron (ENSMUSG00000028327.14, intron 3 of 4) protein_coding-intron (ENSMUSG00000028327.14, intron 1 of 17) -18043 ENSMUSG00000028327.14 ENSMUSG00000028327 ENSMUST00000165478 Stra6l protein_coding Interval_13246 chr10 13552646 13555423 + 0 NA promoter-TSS (ENSMUSG00000019809.16) protein_coding-promoter-TSS (ENSMUSG00000019809.16) -892 ENSMUSG00000019809.16 ENSMUSG00000019809 ENSMUST00000145337 Pex3 protein_coding Interval_39747 chr12 96605096 96605336 + 0 NA Intergenic Intergenic -57098 ENSMUSG00000112040.1 ENSMUSG00000112040 ENSMUST00000218365 Gm47396 lincRNA Interval_71175 chr17 20843128 20843458 + 0 NA intron (ENSMUSG00000045417.2, intron 1 of 1) protein_coding-intron (ENSMUSG00000045417.2, intron 1 of 1) 2843 ENSMUSG00000045417.2 ENSMUSG00000045417 ENSMUST00000053974 Vmn1r230 protein_coding Interval_130923 chr5 134072148 134072430 + 0 NA Intergenic Intergenic 19162 ENSMUSG00000106800.1 ENSMUSG00000106800 ENSMUST00000202497 1700030N18Rik TEC Interval_74202 chr17 47436346 47437296 + 0 NA promoter-TSS (ENSMUSG00000034382.14) protein_coding-promoter-TSS (ENSMUSG00000034382.14) 16 ENSMUSG00000034382.14 ENSMUSG00000034382 ENSMUST00000150819 AI661453 protein_coding Interval_126645 chr5 91603916 91604574 + 0 NA intron (ENSMUSG00000034981.9, intron 2 of 3) protein_coding-intron (ENSMUSG00000034981.9, intron 2 of 3) 86630 ENSMUSG00000034981.9 ENSMUSG00000034981 ENSMUST00000040576 Parm1 protein_coding Interval_115002 chr4 88350329 88351384 + 0 NA intron (ENSMUSG00000038368.16, intron 26 of 41) protein_coding-intron (ENSMUSG00000038368.16, intron 28 of 43) -49494 ENSMUSG00000038368.16 ENSMUSG00000038368 ENSMUST00000107147 Focad protein_coding Interval_156818 chr8 60838613 60838826 + 0 NA Intergenic Intergenic -7593 ENSMUSG00000110261.1 ENSMUSG00000110261 ENSMUST00000211229 Gm45485 processed_pseudogene Interval_138106 chr6 85223481 85224789 + 0 NA intron (ENSMUSG00000033720.12, intron 13 of 13) protein_coding-intron (ENSMUSG00000033720.12, intron 13 of 13) 30616 ENSMUSG00000033726.8 ENSMUSG00000033726 ENSMUST00000173919 Emx1 protein_coding Interval_724 chr1 10162597 10163022 + 0 NA intron (ENSMUSG00000067851.11, intron 22 of 37) protein_coding-intron (ENSMUSG00000067851.11, intron 22 of 37) -3730 ENSMUSG00000088153.1 ENSMUSG00000088153 ENSMUST00000157528 Gm26348 misc_RNA Interval_142417 chr6 141802607 141803474 + 0 NA Intergenic Intergenic -29230 ENSMUSG00000084927.1 ENSMUSG00000084927 ENSMUST00000148411 Gm5724 protein_coding Interval_131470 chr5 137425749 137426792 + 0 NA exon (ENSMUSG00000079173.11, exon 39 of 88) protein_coding-exon (ENSMUSG00000079173.11, exon 39 of 88) -6717 ENSMUSG00000106476.1 ENSMUSG00000106476 ENSMUST00000196458 Rpl36-ps9 processed_pseudogene Interval_44033 chr13 40231252 40231508 + 0 NA intron (ENSMUSG00000047094.9, intron 5 of 18) protein_coding-intron (ENSMUSG00000047094.9, intron 5 of 18) 56631 ENSMUSG00000047094.9 ENSMUSG00000047094 ENSMUST00000224813 Ofcc1 protein_coding Interval_103801 chr3 53063502 53063807 + 0 NA intron (ENSMUSG00000048332.13, intron 2 of 3) protein_coding-intron (ENSMUSG00000048332.13, intron 2 of 3) 11583 ENSMUSG00000104828.1 ENSMUSG00000104828 ENSMUST00000200370 Gm42898 TEC Interval_69219 chr16 91432124 91433736 + 0 NA Intergenic Intergenic -25491 ENSMUSG00000116782.1 ENSMUSG00000116782 ENSMUST00000231789 Gm46562 processed_pseudogene Interval_139702 chr6 107528899 107531372 + 0 NA exon (ENSMUSG00000034648.9, exon 1 of 2) protein_coding-exon (ENSMUSG00000034648.9, exon 1 of 2) 367 ENSMUSG00000034648.9 ENSMUSG00000034648 ENSMUST00000049285 Lrrn1 protein_coding Interval_152490 chr7 133437875 133438395 + 0 NA Intergenic Intergenic -104934 ENSMUSG00000109619.1 ENSMUSG00000109619 ENSMUST00000209700 Gm45672 lincRNA Interval_107032 chr3 103068959 103069452 + 0 NA Intergenic Intergenic -1969 ENSMUSG00000104671.1 ENSMUSG00000104671 ENSMUST00000196302 Gm43062 lincRNA Interval_78687 chr18 17352454 17353039 + 0 NA Intergenic Intergenic -117293 ENSMUSG00000117460.1 ENSMUSG00000117460 ENSMUST00000234739 4921533I20Rik transcribed_processed_pseudogene Interval_21724 chr11 3954527 3955765 + 0 NA intron (ENSMUSG00000034493.1, intron 1 of 1) protein_coding-intron (ENSMUSG00000034493.1, intron 1 of 1) 3432 ENSMUSG00000082816.1 ENSMUSG00000082816 ENSMUST00000122352 Gm11953 processed_pseudogene Interval_60341 chr15 73022623 73023382 + 0 NA intron (ENSMUSG00000047921.17, intron 6 of 16) protein_coding-intron (ENSMUSG00000047921.17, intron 6 of 21) 38043 ENSMUSG00000047921.17 ENSMUSG00000047921 ENSMUST00000228960 Trappc9 protein_coding Interval_103919 chr3 54996731 54997356 + 0 NA Intergenic Intergenic 57994 ENSMUSG00000027793.6 ENSMUSG00000027793 ENSMUST00000199352 Ccna1 protein_coding Interval_121805 chr5 8394266 8394771 + 0 NA Intergenic Intergenic 28151 ENSMUSG00000002297.16 ENSMUSG00000002297 ENSMUST00000198785 Dbf4 protein_coding Interval_13368 chr10 17254945 17255148 + 0 NA Intergenic Intergenic 66565 ENSMUSG00000112478.1 ENSMUSG00000112478 ENSMUST00000219259 Gm47761 lincRNA Interval_41932 chr13 4759919 4760462 + 0 NA Intergenic Intergenic -11461 ENSMUSG00000053499.4 ENSMUSG00000053499 ENSMUST00000065956 Gm5444 lincRNA Interval_30575 chr11 95201952 95202760 + 0 NA Intergenic Intergenic 23276 ENSMUSG00000085992.1 ENSMUSG00000085992 ENSMUST00000150818 Gm11515 lincRNA Interval_2641 chr1 42856292 42856959 + 0 NA intron (ENSMUSG00000060679.14, intron 1 of 3) protein_coding-intron (ENSMUSG00000060679.14, intron 1 of 10) 10193 ENSMUSG00000077448.1 ENSMUSG00000077448 ENSMUST00000104260 Gm23126 snoRNA Interval_84064 chr19 7020159 7020944 + 0 NA TTS (ENSMUSG00000024966.9) protein_coding-TTS (ENSMUSG00000024966.9) -1206 ENSMUSG00000024965.9 ENSMUSG00000024965 ENSMUST00000238171 Fermt3 protein_coding Interval_94108 chr2 84315994 84316834 + 0 NA TTS (ENSMUSG00000084198.1) unprocessed_pseudogene-TTS (ENSMUSG00000084198.1) 1897 ENSMUSG00000084198.1 ENSMUSG00000084198 ENSMUST00000119708 Gm13711 unprocessed_pseudogene Interval_148999 chr7 91226402 91227122 + 0 NA intron (ENSMUSG00000052572.19, intron 1 of 13) protein_coding-intron (ENSMUSG00000052572.19, intron 1 of 22) -16233 ENSMUSG00000089271.1 ENSMUSG00000089271 ENSMUST00000158646 Gm24552 snRNA Interval_37865 chr12 72681198 72682003 + 0 NA Intergenic Intergenic -16846 ENSMUSG00000021094.10 ENSMUSG00000021094 ENSMUST00000221674 Dhrs7 protein_coding Interval_167376 chr9 67930677 67930846 + 0 NA exon (ENSMUSG00000035284.10, exon 47 of 85) protein_coding-exon (ENSMUSG00000035284.10, exon 47 of 85) 90349 ENSMUSG00000035284.10 ENSMUSG00000035284 ENSMUST00000215524 Vps13c protein_coding Interval_67663 chr16 55810013 55810313 + 0 NA Intergenic Intergenic 8352 ENSMUSG00000035356.17 ENSMUSG00000035356 ENSMUST00000139373 Nfkbiz protein_coding Interval_167228 chr9 66329518 66329718 + 0 NA Intergenic Intergenic -20832 ENSMUSG00000038664.16 ENSMUSG00000038664 ENSMUST00000130854 Herc1 protein_coding Interval_60677 chr15 76112268 76112505 + 0 NA exon (ENSMUSG00000115388.2, exon 2 of 2) protein_coding-exon (ENSMUSG00000115388.2, exon 2 of 2) 7809 ENSMUSG00000115388.2 ENSMUSG00000115388 ENSMUST00000226781 Eppk1 protein_coding Interval_24014 chr11 29503469 29504251 + 0 NA TTS (ENSMUSG00000032740.17) protein_coding-TTS (ENSMUSG00000032740.17) 11171 ENSMUSG00000032673.5 ENSMUSG00000032673 ENSMUST00000039900 Prorsd1 protein_coding Interval_162065 chr8 124841741 124842190 + 0 NA intron (ENSMUSG00000031984.8, intron 3 of 6) protein_coding-intron (ENSMUSG00000031984.8, intron 3 of 6) 10267 ENSMUSG00000090118.1 ENSMUSG00000090118 ENSMUST00000161868 Gm16163 processed_transcript Interval_104849 chr3 75892898 75893221 + 0 NA promoter-TSS (ENSMUSG00000034109.15) protein_coding-promoter-TSS (ENSMUSG00000034109.15) -59065 ENSMUSG00000103024.1 ENSMUSG00000103024 ENSMUST00000193507 Gm37685 TEC Interval_143177 chr7 4178347 4178902 + 0 NA Intergenic Intergenic 1257 ENSMUSG00000108641.1 ENSMUSG00000108641 ENSMUST00000206115 Gm44807 processed_pseudogene Interval_146852 chr7 53370645 53371219 + 0 NA Intergenic Intergenic 443862 ENSMUSG00000070203.1 ENSMUSG00000070203 ENSMUST00000093693 Gm22444 snRNA Interval_134691 chr6 30419270 30419652 + 0 NA intron (ENSMUSG00000029775.14, intron 1 of 5) protein_coding-intron (ENSMUSG00000029775.14, intron 1 of 8) -24309 ENSMUSG00000029775.14 ENSMUSG00000029775 ENSMUST00000150854 Klhdc10 protein_coding Interval_135595 chr6 41147410 41148117 + 0 NA Intergenic Intergenic -3977 ENSMUSG00000076473.3 ENSMUSG00000076473 ENSMUST00000103274 Trbv16 TR_V_gene Interval_73340 chr17 36285207 36285465 + 0 NA intron (ENSMUSG00000023083.7, intron 3 of 4) protein_coding-intron (ENSMUSG00000023083.7, intron 3 of 4) 1154 ENSMUSG00000023083.7 ENSMUSG00000023083 ENSMUST00000023845 H2-M10.2 protein_coding Interval_57702 chr15 16151621 16151903 + 0 NA Intergenic Intergenic 56191 ENSMUSG00000115434.1 ENSMUSG00000115434 ENSMUST00000227564 Gm6479 processed_pseudogene Interval_129995 chr5 123606776 123607022 + 0 NA intron (ENSMUSG00000049550.17, intron 5 of 11) protein_coding-intron (ENSMUSG00000049550.17, intron 18 of 24) -21302 ENSMUSG00000084552.1 ENSMUSG00000084552 ENSMUST00000122603 Gm24840 snRNA Interval_165074 chr9 44408835 44413286 + 0 NA TTS (ENSMUSG00000009927.9) protein_coding-TTS (ENSMUSG00000009927.9) 3049 ENSMUSG00000009927.9 ENSMUSG00000009927 ENSMUST00000217620 Rps25 protein_coding Interval_147078 chr7 61569619 61570353 + 0 NA intron (ENSMUSG00000109006.2, intron 2 of 4) lincRNA-intron (ENSMUSG00000109006.2, intron 2 of 4) -20285 ENSMUSG00000059585.4 ENSMUSG00000059585 ENSMUST00000085228 Ube2nl processed_pseudogene Interval_117494 chr4 124149866 124150443 + 0 NA Intergenic Intergenic 129023 ENSMUSG00000103541.1 ENSMUSG00000103541 ENSMUST00000193103 Gm37667 TEC Interval_63283 chr15 100091890 100092572 + 0 NA promoter-TSS (ENSMUSG00000116021.1) TEC-promoter-TSS (ENSMUSG00000116021.1) -474 ENSMUSG00000116021.1 ENSMUSG00000116021 ENSMUST00000230449 Gm49474 TEC Interval_35819 chr12 30450794 30451203 + 0 NA intron (ENSMUSG00000102098.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000102098.1, intron 1 of 2) 7073 ENSMUSG00000088872.1 ENSMUSG00000088872 ENSMUST00000158247 Gm25865 miRNA Interval_122840 chr5 25995925 25997517 + 0 NA Intergenic Intergenic 6876 ENSMUSG00000091049.8 ENSMUSG00000091049 ENSMUST00000170224 Gm1979 protein_coding Interval_167892 chr9 73603845 73604265 + 0 NA intron (ENSMUSG00000062151.13, intron 19 of 32) protein_coding-intron (ENSMUSG00000062151.13, intron 18 of 31) -50185 ENSMUSG00000103832.1 ENSMUSG00000103832 ENSMUST00000195250 Gm37611 TEC Interval_86683 chr19 42587930 42588608 + 0 NA intron (ENSMUSG00000025184.10, intron 5 of 5) protein_coding-intron (ENSMUSG00000025184.10, intron 6 of 6) 7108 ENSMUSG00000025184.10 ENSMUSG00000025184 ENSMUST00000162238 R3hcc1l protein_coding Interval_144851 chr7 28607708 28608426 + 0 NA intron (ENSMUSG00000037469.11, intron 12 of 12) protein_coding-intron (ENSMUSG00000037469.11, intron 12 of 12) -9981 ENSMUSG00000030602.13 ENSMUSG00000030602 ENSMUST00000150454 Pak4 protein_coding Interval_112518 chr4 41754943 41756323 + 0 NA promoter-TSS (ENSMUSG00000036073.17) protein_coding-promoter-TSS (ENSMUSG00000036073.17) -621 ENSMUSG00000036073.17 ENSMUSG00000036073 ENSMUST00000133106 Galt protein_coding Interval_60207 chr15 68087002 68087245 + 0 NA intron (ENSMUSG00000022335.17, intron 13 of 13) protein_coding-intron (ENSMUSG00000022335.17, intron 15 of 15) -144319 ENSMUSG00000116519.1 ENSMUSG00000116519 ENSMUST00000230045 Gm49409 processed_pseudogene Interval_90676 chr2 31822622 31824367 + 0 NA intron (ENSMUSG00000026841.7, intron 4 of 6) protein_coding-intron (ENSMUSG00000026841.7, intron 4 of 6) -12914 ENSMUSG00000043102.2 ENSMUSG00000043102 ENSMUST00000057407 Qrfp protein_coding Interval_77695 chr17 94371024 94371264 + 0 NA Intergenic Intergenic -42281 ENSMUSG00000077433.1 ENSMUSG00000077433 ENSMUST00000104245 Gm22593 snRNA Interval_153720 chr8 5206248 5206490 + 0 NA Intergenic Intergenic 89008 ENSMUSG00000109181.1 ENSMUSG00000109181 ENSMUST00000208940 Gm5605 processed_pseudogene Interval_92523 chr2 60283489 60284645 + 0 NA exon (ENSMUSG00000060703.12, exon 1 of 5) protein_coding-exon (ENSMUSG00000060703.12, exon 1 of 5) 421 ENSMUSG00000060703.12 ENSMUSG00000060703 ENSMUST00000074606 Cd302 protein_coding Interval_169987 chr9 103450685 103451072 + 0 NA intron (ENSMUSG00000032556.11, intron 2 of 6) protein_coding-intron (ENSMUSG00000032556.11, intron 2 of 6) -1782 ENSMUSG00000032556.11 ENSMUSG00000032556 ENSMUST00000124310 Bfsp2 protein_coding Interval_66267 chr16 32739664 32740578 + 0 NA intron (ENSMUSG00000079620.13, intron 1 of 24) protein_coding-intron (ENSMUSG00000079620.13, intron 1 of 26) 13455 ENSMUSG00000098225.1 ENSMUSG00000098225 ENSMUST00000182938 Gm9556 processed_pseudogene Interval_86989 chr19 45377994 45378890 + 0 NA intron (ENSMUSG00000025217.15, intron 1 of 2) protein_coding-intron (ENSMUSG00000025217.15, intron 1 of 14) 14685 ENSMUSG00000025217.15 ENSMUSG00000025217 ENSMUST00000224478 Btrc protein_coding Interval_28294 chr11 74960124 74960715 + 0 NA intron (ENSMUSG00000038290.15, intron 7 of 16) protein_coding-intron (ENSMUSG00000038290.15, intron 8 of 18) -24268 ENSMUSG00000088719.1 ENSMUSG00000088719 ENSMUST00000158094 Gm22733 snRNA Interval_6579 chr1 117485517 117487745 + 0 NA Intergenic Intergenic -49670 ENSMUSG00000065865.1 ENSMUSG00000065865 ENSMUST00000083931 Gm24030 snRNA Interval_121626 chr5 4035459 4035915 + 0 NA exon (ENSMUSG00000040407.18, exon 1 of 1) protein_coding-exon (ENSMUSG00000040407.18, exon 1 of 1) 12272 ENSMUSG00000040407.18 ENSMUSG00000040407 ENSMUST00000196837 Akap9 protein_coding Interval_22503 chr11 11209313 11209573 + 0 NA intron (ENSMUSG00000050830.17, intron 3 of 4) protein_coding-intron (ENSMUSG00000050830.17, intron 2 of 3) 68929 ENSMUSG00000088861.1 ENSMUSG00000088861 ENSMUST00000158236 Gm23065 rRNA Interval_29524 chr11 84676486 84677141 + 0 NA Intergenic Intergenic 43619 ENSMUSG00000085044.1 ENSMUSG00000085044 ENSMUST00000150735 1700109G15Rik lincRNA Interval_45824 chr13 58367469 58368347 + 0 NA Intergenic Intergenic 17317 ENSMUSG00000021550.6 ENSMUSG00000021550 ENSMUST00000022032 2210016F16Rik protein_coding Interval_107133 chr3 103783301 103784711 + 0 NA intron (ENSMUSG00000085754.7, intron 6 of 6) protein_coding-intron (ENSMUSG00000008730.17, intron 1 of 15) -1027 ENSMUSG00000104874.1 ENSMUSG00000104874 ENSMUST00000196896 Gm43387 sense_intronic Interval_90789 chr2 32617774 32618057 + 0 NA intron (ENSMUSG00000026811.18, intron 4 of 4) protein_coding-intron (ENSMUSG00000026811.18, intron 4 of 5) -7523 ENSMUSG00000026817.14 ENSMUSG00000026817 ENSMUST00000135392 Ak1 protein_coding Interval_15294 chr10 44288464 44289193 + 0 NA intron (ENSMUSG00000038160.7, intron 2 of 2) protein_coding-intron (ENSMUSG00000038160.7, intron 2 of 7) 20413 ENSMUSG00000038160.7 ENSMUSG00000038160 ENSMUST00000217412 Atg5 protein_coding Interval_10073 chr1 165615035 165615967 + 0 NA intron (ENSMUSG00000026566.15, intron 1 of 2) protein_coding-intron (ENSMUSG00000026566.15, intron 1 of 4) -1611 ENSMUSG00000103098.1 ENSMUSG00000103098 ENSMUST00000193556 Gm37559 processed_pseudogene Interval_49083 chr13 107826647 107826966 + 0 NA intron (ENSMUSG00000032846.10, intron 1 of 12) protein_coding-intron (ENSMUSG00000032846.10, intron 2 of 14) 2474 ENSMUSG00000093334.2 ENSMUSG00000093334 ENSMUST00000175593 Gm22118 miRNA Interval_114021 chr4 62530752 62531626 + 0 NA intron (ENSMUSG00000058046.1, intron 2 of 14) protein_coding-intron (ENSMUSG00000058046.1, intron 2 of 14) 5820 ENSMUSG00000058046.1 ENSMUSG00000058046 ENSMUST00000062145 4933430I17Rik protein_coding Interval_55950 chr14 103093024 103093804 + 0 NA intron (ENSMUSG00000022124.15, intron 2 of 4) protein_coding-intron (ENSMUSG00000022124.15, intron 2 of 4) 6092 ENSMUSG00000022124.15 ENSMUSG00000022124 ENSMUST00000123043 Fbxl3 protein_coding Interval_70243 chr17 7197308 7197535 + 0 NA intron (ENSMUSG00000023809.10, intron 1 of 20) protein_coding-intron (ENSMUSG00000023809.10, intron 1 of 20) 27294 ENSMUSG00000023809.10 ENSMUSG00000023809 ENSMUST00000231530 Rps6ka2 protein_coding Interval_128541 chr5 113918685 113919850 + 0 NA Intergenic Intergenic 9537 ENSMUSG00000065320.1 ENSMUSG00000065320 ENSMUST00000083386 Gm22056 snRNA Interval_145681 chr7 37336504 37337153 + 0 NA intron (ENSMUSG00000043456.17, intron 3 of 3) protein_coding-intron (ENSMUSG00000043456.17, intron 3 of 3) 29802 ENSMUSG00000108507.1 ENSMUSG00000108507 ENSMUST00000206785 6720469O03Rik TEC Interval_160297 chr8 107833714 107834572 + 0 NA Intergenic Intergenic -6814 ENSMUSG00000095727.1 ENSMUSG00000095727 ENSMUST00000178119 Gm23646 miRNA Interval_1968 chr1 35213638 35215086 + 0 NA Intergenic Intergenic -35278 ENSMUSG00000077231.1 ENSMUSG00000077231 ENSMUST00000104043 Gm25096 snoRNA Interval_94688 chr2 93389584 93389875 + 0 NA Intergenic Intergenic -2900 ENSMUSG00000089073.1 ENSMUSG00000089073 ENSMUST00000158448 Gm23380 rRNA Interval_74205 chr17 47458377 47458591 + 0 NA intron (ENSMUSG00000034382.14, intron 2 of 4) protein_coding-intron (ENSMUSG00000034382.14, intron 2 of 4) -21108 ENSMUSG00000047150.8 ENSMUSG00000047150 ENSMUST00000160678 1700001C19Rik protein_coding Interval_105204 chr3 83801476 83801881 + 0 NA intron (ENSMUSG00000104082.2, intron 1 of 6) unprocessed_pseudogene-intron (ENSMUSG00000104082.2, intron 1 of 6) 1710 ENSMUSG00000104082.2 ENSMUSG00000104082 ENSMUST00000193706 Gm7115 unprocessed_pseudogene Interval_127617 chr5 105819424 105820493 + 0 NA promoter-TSS (ENSMUSG00000084878.1) antisense-promoter-TSS (ENSMUSG00000084878.1) -970 ENSMUSG00000084878.1 ENSMUSG00000084878 ENSMUST00000135958 Lrrc8dos antisense Interval_130263 chr5 125278223 125278754 + 0 NA intron (ENSMUSG00000037936.15, intron 5 of 5) protein_coding-intron (ENSMUSG00000037936.15, intron 12 of 12) -5673 ENSMUSG00000105039.1 ENSMUSG00000105039 ENSMUST00000198586 Gm32585 lincRNA Interval_100641 chr2 170668691 170669964 + 0 NA Intergenic Intergenic -6862 ENSMUSG00000085158.1 ENSMUSG00000085158 ENSMUST00000147141 Gm14264 lincRNA Interval_9638 chr1 160624488 160625566 + 0 NA intron (ENSMUSG00000026721.16, intron 13 of 20) protein_coding-intron (ENSMUSG00000026721.16, intron 13 of 20) -12577 ENSMUSG00000103432.1 ENSMUSG00000103432 ENSMUST00000193946 6720464F23Rik TEC Interval_138805 chr6 92057938 92058270 + 0 NA intron (ENSMUSG00000034037.14, intron 9 of 19) protein_coding-intron (ENSMUSG00000034037.14, intron 10 of 20) -9325 ENSMUSG00000034037.14 ENSMUSG00000034037 ENSMUST00000130369 Fgd5 protein_coding Interval_167736 chr9 72378313 72379117 + 0 NA intron (ENSMUSG00000097211.2, intron 1 of 1) antisense-intron (ENSMUSG00000097211.2, intron 1 of 1) -5674 ENSMUSG00000102925.1 ENSMUSG00000102925 ENSMUST00000193900 Gm37150 TEC Interval_19916 chr10 111189917 111190248 + 0 NA intron (ENSMUSG00000020189.15, intron 1 of 5) protein_coding-intron (ENSMUSG00000020189.15, intron 1 of 22) 10130 ENSMUSG00000112642.1 ENSMUSG00000112642 ENSMUST00000219788 Gm17849 processed_pseudogene Interval_105379 chr3 85753204 85753676 + 0 NA intron (ENSMUSG00000051000.17, intron 2 of 11) protein_coding-intron (ENSMUSG00000051000.17, intron 2 of 11) -79452 ENSMUSG00000051000.17 ENSMUSG00000051000 ENSMUST00000094148 Fam160a1 protein_coding Interval_25008 chr11 42989986 42990392 + 0 NA Intergenic Intergenic -45557 ENSMUSG00000055456.1 ENSMUSG00000055456 ENSMUST00000069051 Gm9972 TEC Interval_2652 chr1 42950352 42950802 + 0 NA Intergenic Intergenic -2295 ENSMUSG00000041907.9 ENSMUSG00000041907 ENSMUST00000114761 Gpr45 protein_coding Interval_146132 chr7 44246035 44247453 + 0 NA promoter-TSS (ENSMUSG00000045411.16) protein_coding-promoter-TSS (ENSMUSG00000045411.16) 18 ENSMUSG00000101166.6 ENSMUSG00000101166 ENSMUST00000125318 Gm28496 processed_transcript Interval_42695 chr13 18040223 18040854 + 0 NA Intergenic Intergenic 1977 ENSMUSG00000113496.1 ENSMUSG00000113496 ENSMUST00000222946 Gm6575 processed_pseudogene Interval_1039 chr1 14291463 14292852 + 0 NA intron (ENSMUSG00000025932.14, intron 1 of 6) protein_coding-intron (ENSMUSG00000025932.14, intron 3 of 17) 12413 ENSMUSG00000025932.14 ENSMUSG00000025932 ENSMUST00000185329 Eya1 protein_coding Interval_61873 chr15 84811739 84812956 + 0 NA intron (ENSMUSG00000016624.15, intron 2 of 11) protein_coding-intron (ENSMUSG00000016624.15, intron 2 of 12) -24898 ENSMUSG00000016624.15 ENSMUSG00000016624 ENSMUST00000160389 Phf21b protein_coding Interval_17055 chr10 70905363 70906140 + 0 NA intron (ENSMUSG00000047692.6, intron 3 of 5) antisense-intron (ENSMUSG00000047692.6, intron 3 of 6) 23647 ENSMUSG00000094703.1 ENSMUSG00000094703 ENSMUST00000178420 Gm24486 snRNA Interval_148049 chr7 78846600 78847642 + 0 NA promoter-TSS (ENSMUSG00000108791.1) lincRNA-promoter-TSS (ENSMUSG00000108791.1) -133 ENSMUSG00000108791.1 ENSMUSG00000108791 ENSMUST00000205762 1700011D18Rik lincRNA Interval_156600 chr8 54196151 54196553 + 0 NA Intergenic Intergenic 118573 ENSMUSG00000031520.6 ENSMUSG00000031520 ENSMUST00000210831 Vegfc protein_coding Interval_68094 chr16 64976154 64976359 + 0 NA intron (ENSMUSG00000050783.5, intron 2 of 2) protein_coding-intron (ENSMUSG00000050783.5, intron 2 of 2) -57172 ENSMUSG00000116811.1 ENSMUSG00000116811 ENSMUST00000232275 Gm16385 processed_pseudogene Interval_116990 chr4 118746300 118747070 + 0 NA Intergenic Intergenic 12052 ENSMUSG00000095218.3 ENSMUSG00000095218 ENSMUST00000084315 Olfr1338 protein_coding Interval_143382 chr7 6258094 6260285 + 0 NA intron (ENSMUSG00000053367.15, intron 1 of 13) protein_coding-intron (ENSMUSG00000053367.15, intron 3 of 15) -1347 ENSMUSG00000053367.15 ENSMUSG00000053367 ENSMUST00000155248 Epp13 protein_coding Interval_167237 chr9 66511159 66512796 + 0 NA exon (ENSMUSG00000050503.9, exon 2 of 2) protein_coding-exon (ENSMUSG00000050503.9, exon 2 of 2) 2632 ENSMUSG00000050503.9 ENSMUSG00000050503 ENSMUST00000056890 Fbxl22 protein_coding Interval_17138 chr10 72116869 72117210 + 0 NA Intergenic Intergenic 90057 ENSMUSG00000112414.1 ENSMUSG00000112414 ENSMUST00000219284 Gm34609 lincRNA Interval_9219 chr1 155169569 155169967 + 0 NA intron (ENSMUSG00000026470.14, intron 1 of 7) protein_coding-intron (ENSMUSG00000026470.14, intron 1 of 7) -10033 ENSMUSG00000104181.1 ENSMUSG00000104181 ENSMUST00000195316 Gm8850 processed_pseudogene Interval_63521 chr15 101708637 101708871 + 0 NA intron (ENSMUSG00000061527.7, intron 7 of 8) protein_coding-intron (ENSMUSG00000061527.7, intron 7 of 8) -1520 ENSMUSG00000105682.1 ENSMUSG00000105682 ENSMUST00000198689 Gm44323 miRNA Interval_3642 chr1 60293620 60293865 + 0 NA intron (ENSMUSG00000073664.11, intron 19 of 23) protein_coding-intron (ENSMUSG00000073664.11, intron 19 of 23) 9807 ENSMUSG00000073664.11 ENSMUSG00000073664 ENSMUST00000190958 Nbeal1 protein_coding Interval_125364 chr5 66470797 66471305 + 0 NA intron (ENSMUSG00000029207.16, intron 2 of 3) protein_coding-intron (ENSMUSG00000029207.16, intron 3 of 17) 21121 ENSMUSG00000029207.16 ENSMUSG00000029207 ENSMUST00000159847 Apbb2 protein_coding Interval_60988 chr15 78539563 78540131 + 0 NA TTS (ENSMUSG00000044933.3) protein_coding-TTS (ENSMUSG00000044933.3) 3194 ENSMUSG00000044933.3 ENSMUSG00000044933 ENSMUST00000230400 Sstr3 protein_coding Interval_55905 chr14 101942702 101943679 + 0 NA Intergenic Intergenic 39573 ENSMUSG00000115584.1 ENSMUSG00000115584 ENSMUST00000226515 Gm5854 processed_pseudogene Interval_120445 chr4 148657710 148658041 + 0 NA intron (ENSMUSG00000070577.5, intron 3 of 10) protein_coding-intron (ENSMUSG00000070577.5, intron 3 of 10) 14558 ENSMUSG00000070577.5 ENSMUSG00000070577 ENSMUST00000105698 Gm572 protein_coding Interval_44652 chr13 46935083 46935860 + 0 NA Intergenic Intergenic 10222 ENSMUSG00000114449.1 ENSMUSG00000114449 ENSMUST00000224563 Gm48325 processed_pseudogene Interval_131436 chr5 137185873 137186183 + 0 NA TTS (ENSMUSG00000106190.1) processed_pseudogene-TTS (ENSMUSG00000106190.1) 3139 ENSMUSG00000106190.1 ENSMUSG00000106190 ENSMUST00000199527 Gm20768 processed_pseudogene Interval_166678 chr9 61868899 61870222 + 0 NA Intergenic Intergenic 17856 ENSMUSG00000110968.1 ENSMUSG00000110968 ENSMUST00000213861 Gm19208 processed_pseudogene Interval_17157 chr10 72957074 72958274 + 0 NA Intergenic Intergenic -7882 ENSMUSG00000112168.1 ENSMUSG00000112168 ENSMUST00000219415 Gm34776 lincRNA Interval_44102 chr13 40904171 40905072 + 0 NA intron (ENSMUSG00000021360.16, intron 1 of 2) protein_coding-intron (ENSMUSG00000021360.16, intron 1 of 2) 7586 ENSMUSG00000114601.1 ENSMUSG00000114601 ENSMUST00000225964 Gm48188 processed_pseudogene Interval_88691 chr2 9794034 9794288 + 0 NA Intergenic Intergenic 81238 ENSMUSG00000015619.10 ENSMUSG00000015619 ENSMUST00000142305 Gata3 protein_coding Interval_37050 chr12 56980500 56980740 + 0 NA promoter-TSS (ENSMUSG00000035472.14) protein_coding-promoter-TSS (ENSMUSG00000035472.14) 180023 ENSMUSG00000035472.14 ENSMUSG00000035472 ENSMUST00000160892 Slc25a21 protein_coding Interval_143870 chr7 16858252 16858615 + 0 NA exon (ENSMUSG00000041187.16, exon 14 of 18) protein_coding-exon (ENSMUSG00000041187.16, exon 14 of 18) -4914 ENSMUSG00000041187.16 ENSMUSG00000041187 ENSMUST00000205798 Prkd2 protein_coding Interval_155552 chr8 34325566 34326048 + 0 NA Intergenic Intergenic -2103 ENSMUSG00000056797.6 ENSMUSG00000056797 ENSMUST00000075321 Gm4889 processed_pseudogene Interval_142307 chr6 140564558 140565335 + 0 NA intron (ENSMUSG00000030231.11, intron 10 of 19) protein_coding-intron (ENSMUSG00000030231.11, intron 10 of 19) 1378 ENSMUSG00000030231.11 ENSMUSG00000030231 ENSMUST00000204528 Plekha5 protein_coding Interval_169570 chr9 99208516 99208967 + 0 NA Intergenic Intergenic 11826 ENSMUSG00000101498.1 ENSMUSG00000101498 ENSMUST00000185530 Gm2950 processed_pseudogene Interval_83025 chr18 80580529 80581314 + 0 NA intron (ENSMUSG00000118379.1, intron 2 of 3) lincRNA-intron (ENSMUSG00000118379.1, intron 2 of 3) 24890 ENSMUSG00000118379.1 ENSMUSG00000118379 ENSMUST00000237693 Gm41790 lincRNA Interval_161270 chr8 119422184 119422558 + 0 NA Intergenic Intergenic -14778 ENSMUSG00000074063.10 ENSMUSG00000074063 ENSMUST00000144381 Osgin1 protein_coding Interval_143517 chr7 11582191 11583095 + 0 NA Intergenic Intergenic 11551 ENSMUSG00000110024.1 ENSMUSG00000110024 ENSMUST00000209309 Gm7210 unprocessed_pseudogene Interval_29475 chr11 84231026 84231321 + 0 NA intron (ENSMUSG00000020532.18, intron 8 of 8) protein_coding-intron (ENSMUSG00000020532.18, intron 7 of 53) 41580 ENSMUSG00000103122.1 ENSMUSG00000103122 ENSMUST00000194891 Gm37391 TEC Interval_150191 chr7 107757314 107758629 + 0 NA promoter-TSS (ENSMUSG00000048065.8) protein_coding-promoter-TSS (ENSMUSG00000048065.8) 25 ENSMUSG00000048065.8 ENSMUSG00000048065 ENSMUST00000208217 Cyb5r2 protein_coding Interval_142994 chr6 148152175 148153103 + 0 NA intron (ENSMUSG00000030303.15, intron 4 of 12) protein_coding-intron (ENSMUSG00000030303.15, intron 4 of 11) 30569 ENSMUSG00000030304.11 ENSMUSG00000030304 ENSMUST00000132413 Ergic2 protein_coding Interval_103571 chr3 49866121 49866436 + 0 NA Intergenic Intergenic -85391 ENSMUSG00000102943.1 ENSMUSG00000102943 ENSMUST00000193230 Gm37550 processed_pseudogene Interval_13917 chr10 24624835 24625516 + 0 NA Intergenic Intergenic 29449 ENSMUSG00000019997.11 ENSMUSG00000019997 ENSMUST00000129142 Ccn2 protein_coding Interval_89426 chr2 20618557 20618946 + 0 NA intron (ENSMUSG00000036617.17, intron 1 of 2) protein_coding-intron (ENSMUSG00000036617.17, intron 3 of 18) 58947 ENSMUSG00000098575.1 ENSMUSG00000098575 ENSMUST00000183963 Gm27446 misc_RNA Interval_69337 chr16 92313750 92314951 + 0 NA Intergenic Intergenic -1882 ENSMUSG00000085637.2 ENSMUSG00000085637 ENSMUST00000132861 1700048M11Rik antisense Interval_58299 chr15 32005647 32006324 + 0 NA Intergenic Intergenic -43966 ENSMUSG00000115561.1 ENSMUSG00000115561 ENSMUST00000227417 Gm49285 TEC Interval_121693 chr5 5358744 5359494 + 0 NA intron (ENSMUSG00000028926.15, intron 2 of 2) protein_coding-intron (ENSMUSG00000028926.15, intron 2 of 14) 21074 ENSMUSG00000028926.15 ENSMUSG00000028926 ENSMUST00000200637 Cdk14 protein_coding Interval_54327 chr14 67700495 67701006 + 0 NA intron (ENSMUSG00000048922.18, intron 7 of 14) protein_coding-intron (ENSMUSG00000048922.18, intron 7 of 7) 14860 ENSMUSG00000048922.18 ENSMUSG00000048922 ENSMUST00000124045 Cdca2 protein_coding Interval_48873 chr13 104204136 104204922 + 0 NA TTS (ENSMUSG00000021713.9) protein_coding-TTS (ENSMUSG00000021713.9) 24314 ENSMUSG00000021713.9 ENSMUSG00000021713 ENSMUST00000223755 Ppwd1 protein_coding Interval_62540 chr15 94517533 94518936 + 0 NA Intergenic Intergenic 25259 ENSMUSG00000033356.3 ENSMUSG00000033356 ENSMUST00000134061 Pus7l protein_coding Interval_39690 chr12 92542725 92543289 + 0 NA Intergenic Intergenic -69046 ENSMUSG00000113499.1 ENSMUSG00000113499 ENSMUST00000223493 Gm18500 processed_pseudogene Interval_26394 chr11 57599120 57601183 + 0 NA Intergenic Intergenic 27639 ENSMUSG00000086028.1 ENSMUSG00000086028 ENSMUST00000128521 Gm12243 lincRNA Interval_161510 chr8 120823083 120824052 + 0 NA intron (ENSMUSG00000092329.1, intron 1 of 15) protein_coding-intron (ENSMUSG00000092329.1, intron 1 of 15) -56639 ENSMUSG00000097087.1 ENSMUSG00000097087 ENSMUST00000181778 Gm26878 lincRNA Interval_115449 chr4 99043592 99043786 + 0 NA intron (ENSMUSG00000028553.12, intron 3 of 4) protein_coding-intron (ENSMUSG00000028556.15, intron 14 of 48) 10510 ENSMUSG00000028553.12 ENSMUSG00000028553 ENSMUST00000125546 Angptl3 protein_coding Interval_58326 chr15 32395565 32396777 + 0 NA intron (ENSMUSG00000022231.10, intron 2 of 7) protein_coding-intron (ENSMUSG00000022231.10, intron 2 of 22) 151346 ENSMUSG00000022231.10 ENSMUSG00000022231 ENSMUST00000227429 Sema5a protein_coding Interval_27869 chr11 70523193 70523477 + 0 NA Intergenic Intergenic -2775 ENSMUSG00000018286.6 ENSMUSG00000018286 ENSMUST00000128870 Psmb6 protein_coding Interval_18586 chr10 88187504 88188125 + 0 NA Intergenic Intergenic -13449 ENSMUSG00000020056.16 ENSMUSG00000020056 ENSMUST00000182211 Washc3 protein_coding Interval_43316 chr13 29022433 29022861 + 0 NA intron (ENSMUSG00000086363.7, intron 1 of 4) lincRNA-intron (ENSMUSG00000086363.7, intron 1 of 3) 8248 ENSMUSG00000086363.7 ENSMUSG00000086363 ENSMUST00000145801 A330102I10Rik lincRNA Interval_24517 chr11 33940080 33940564 + 0 NA intron (ENSMUSG00000053519.17, intron 1 of 7) protein_coding-intron (ENSMUSG00000053519.17, intron 1 of 3) -22691 ENSMUSG00000020155.2 ENSMUSG00000020155 ENSMUST00000020362 Kcnmb1 protein_coding Interval_57504 chr15 11903181 11907470 + 0 NA exon (ENSMUSG00000022206.7, exon 1 of 8) protein_coding-exon (ENSMUSG00000022206.7, exon 1 of 8) 349 ENSMUSG00000022206.7 ENSMUSG00000022206 ENSMUST00000226878 Npr3 protein_coding Interval_167900 chr9 73895128 73895487 + 0 NA intron (ENSMUSG00000062151.13, intron 2 of 32) protein_coding-intron (ENSMUSG00000062151.13, intron 1 of 31) -35129 ENSMUSG00000103202.1 ENSMUSG00000103202 ENSMUST00000192828 Gm37326 TEC Interval_44782 chr13 48585893 48586427 + 0 NA exon (ENSMUSG00000038042.11, exon 7 of 10) protein_coding-exon (ENSMUSG00000038042.11, exon 7 of 10) 7200 ENSMUSG00000038042.11 ENSMUSG00000038042 ENSMUST00000223025 Ptpdc1 protein_coding Interval_68593 chr16 80167792 80168073 + 0 NA Intergenic Intergenic 30580 ENSMUSG00000088476.1 ENSMUSG00000088476 ENSMUST00000157851 Gm23083 snoRNA Interval_174285 chrX 143290091 143290420 + 0 NA intron (ENSMUSG00000031283.16, intron 11 of 11) protein_coding-intron (ENSMUSG00000031283.16, intron 10 of 10) 103646 ENSMUSG00000031283.16 ENSMUSG00000031283 ENSMUST00000207415 Chrdl1 protein_coding Interval_108783 chr3 131249257 131249717 + 0 NA intron (ENSMUSG00000027984.8, intron 2 of 2) protein_coding-intron (ENSMUSG00000027984.8, intron 2 of 7) 22537 ENSMUSG00000027984.8 ENSMUSG00000027984 ENSMUST00000152427 Hadh protein_coding Interval_93887 chr2 77997443 77998259 + 0 NA Intergenic Intergenic -34789 ENSMUSG00000081719.1 ENSMUSG00000081719 ENSMUST00000121278 Gm13726 processed_pseudogene Interval_138082 chr6 85029195 85029996 + 0 NA intron (ENSMUSG00000033769.16, intron 1 of 2) protein_coding-intron (ENSMUSG00000033769.16, intron 1 of 16) -32979 ENSMUSG00000107629.1 ENSMUSG00000107629 ENSMUST00000203336 Gm44011 processed_pseudogene Interval_15252 chr10 43778170 43778396 + 0 NA Intergenic Intergenic 32427 ENSMUSG00000111422.1 ENSMUSG00000111422 ENSMUST00000215747 1700027J07Rik lincRNA Interval_27852 chr11 70394871 70395440 + 0 NA exon (ENSMUSG00000018921.11, exon 16 of 17) protein_coding-exon (ENSMUSG00000018921.11, exon 16 of 17) 14876 ENSMUSG00000018921.11 ENSMUSG00000018921 ENSMUST00000135148 Pelp1 protein_coding Interval_168252 chr9 78209932 78210157 + 0 NA TTS (ENSMUSG00000032348.6) protein_coding-TTS (ENSMUSG00000032348.6) 4801 ENSMUSG00000111015.1 ENSMUSG00000111015 ENSMUST00000216513 Gm3126 processed_pseudogene Interval_15082 chr10 42453853 42454902 + 0 NA exon (ENSMUSG00000038302.14, exon 2 of 13) protein_coding-exon (ENSMUSG00000038302.14, exon 2 of 13) 18488 ENSMUSG00000083429.2 ENSMUSG00000083429 ENSMUST00000117283 Gm15198 processed_pseudogene Interval_63398 chr15 100811907 100812257 + 0 NA promoter-TSS (ENSMUSG00000023032.12) protein_coding-promoter-TSS (ENSMUSG00000023032.12) 9334 ENSMUSG00000023032.12 ENSMUSG00000023032 ENSMUST00000162744 Slc4a8 protein_coding Interval_36062 chr12 34744894 34745174 + 0 NA intron (ENSMUSG00000004698.11, intron 2 of 11) protein_coding-intron (ENSMUSG00000004698.11, intron 3 of 4) -116396 ENSMUSG00000113386.1 ENSMUSG00000113386 ENSMUST00000222121 Gm47357 sense_intronic Interval_124738 chr5 53620121 53620655 + 0 NA intron (ENSMUSG00000039191.12, intron 1 of 4) protein_coding-intron (ENSMUSG00000039191.12, intron 1 of 10) -18244 ENSMUSG00000039191.12 ENSMUSG00000039191 ENSMUST00000202092 Rbpj protein_coding Interval_122253 chr5 20692047 20692548 + 0 NA intron (ENSMUSG00000040003.18, intron 5 of 5) protein_coding-intron (ENSMUSG00000040003.18, intron 22 of 22) -9980 ENSMUSG00000073174.6 ENSMUSG00000073174 ENSMUST00000189302 Gm29254 3prime_overlapping_ncRNA Interval_123300 chr5 31208500 31208768 + 0 NA promoter-TSS (ENSMUSG00000029147.11) protein_coding-promoter-TSS (ENSMUSG00000029147.11) -3551 ENSMUSG00000029147.11 ENSMUSG00000029147 ENSMUST00000200740 Ppm1g protein_coding Interval_137895 chr6 83185508 83186461 + 0 NA promoter-TSS (ENSMUSG00000031865.16) protein_coding-promoter-TSS (ENSMUSG00000031865.16) -8559 ENSMUSG00000031865.16 ENSMUSG00000031865 ENSMUST00000153793 Dctn1 protein_coding Interval_87443 chr19 51032626 51032985 + 0 NA Intergenic Intergenic -111944 ENSMUSG00000118338.1 ENSMUSG00000118338 ENSMUST00000235635 Gm50317 TEC Interval_16894 chr10 69573550 69574741 + 0 NA intron (ENSMUSG00000069601.14, intron 1 of 17) protein_coding-intron (ENSMUSG00000069601.14, intron 1 of 16) -7784 ENSMUSG00000112729.1 ENSMUSG00000112729 ENSMUST00000220152 Gm46231 processed_pseudogene Interval_145674 chr7 37247090 37247323 + 0 NA Intergenic Intergenic -52059 ENSMUSG00000099715.2 ENSMUSG00000099715 ENSMUST00000190250 Gm28077 lincRNA Interval_163641 chr9 23009538 23010205 + 0 NA Intergenic Intergenic -213415 ENSMUSG00000031963.8 ENSMUSG00000031963 ENSMUST00000214050 Bmper protein_coding Interval_84862 chr19 17903864 17904158 + 0 NA Intergenic Intergenic -11960 ENSMUSG00000076305.1 ENSMUSG00000076305 ENSMUST00000102350 Gm23063 miRNA Interval_65251 chr16 20860447 20861587 + 0 NA Intergenic Intergenic 32542 ENSMUSG00000116850.1 ENSMUSG00000116850 ENSMUST00000232124 Gm49742 lincRNA Interval_166779 chr9 62590649 62591039 + 0 NA Intergenic Intergenic 75815 ENSMUSG00000084540.1 ENSMUSG00000084540 ENSMUST00000122591 n-R5s84 rRNA Interval_165962 chr9 55010464 55010763 + 0 NA TTS (ENSMUSG00000032303.8) protein_coding-TTS (ENSMUSG00000032303.8) 15946 ENSMUSG00000032303.8 ENSMUSG00000032303 ENSMUST00000214204 Chrna3 protein_coding Interval_155097 chr8 26456612 26457077 + 0 NA TTS (ENSMUSG00000109961.1) lincRNA-TTS (ENSMUSG00000109961.1) 11996 ENSMUSG00000109961.1 ENSMUSG00000109961 ENSMUST00000209999 Gm31983 lincRNA Interval_5628 chr1 90404588 90405822 + 0 NA Intergenic Intergenic 49296 ENSMUSG00000101997.1 ENSMUSG00000101997 ENSMUST00000187630 Gm28722 lincRNA Interval_44121 chr13 41021546 41022421 + 0 NA intron (ENSMUSG00000021361.7, intron 5 of 5) protein_coding-intron (ENSMUSG00000021361.7, intron 5 of 5) 5691 ENSMUSG00000021361.7 ENSMUSG00000021361 ENSMUST00000021790 Tmem14c protein_coding Interval_67003 chr16 39272752 39273686 + 0 NA Intergenic Intergenic -84313 ENSMUSG00000116965.1 ENSMUSG00000116965 ENSMUST00000231748 Gm36742 lincRNA Interval_41763 chr12 118842728 118843411 + 0 NA Intergenic Intergenic -4517 ENSMUSG00000048562.7 ENSMUSG00000048562 ENSMUST00000223305 Sp8 protein_coding Interval_11672 chr1 184519846 184520173 + 0 NA Intergenic Intergenic 37682 ENSMUSG00000101574.1 ENSMUSG00000101574 ENSMUST00000188766 1700112H15Rik lincRNA Interval_130141 chr5 124500361 124501086 + 0 NA intron (ENSMUSG00000029392.12, intron 3 of 4) protein_coding-intron (ENSMUSG00000029392.12, intron 6 of 6) 3248 ENSMUSG00000029392.12 ENSMUSG00000029392 ENSMUST00000199125 Rilpl1 protein_coding Interval_152225 chr7 130750139 130751564 + 0 NA intron (ENSMUSG00000030852.18, intron 11 of 17) protein_coding-intron (ENSMUSG00000030852.18, intron 11 of 17) -16102 ENSMUSG00000109104.1 ENSMUSG00000109104 ENSMUST00000208365 Gm6108 processed_pseudogene Interval_139256 chr6 97595163 97595421 + 0 NA intron (ENSMUSG00000030064.16, intron 1 of 7) protein_coding-intron (ENSMUSG00000030064.16, intron 1 of 23) -14200 ENSMUSG00000108093.1 ENSMUSG00000108093 ENSMUST00000204031 Gm44102 TEC Interval_142686 chr6 145004293 145004632 + 0 NA TTS (ENSMUSG00000030268.17) protein_coding-TTS (ENSMUSG00000030268.17) 33726 ENSMUSG00000088867.1 ENSMUSG00000088867 ENSMUST00000158242 Gm23071 rRNA Interval_152043 chr7 128530837 128532018 + 0 NA intron (ENSMUSG00000030847.8, intron 1 of 3) protein_coding-intron (ENSMUSG00000030847.8, intron 1 of 3) -7505 ENSMUSG00000108614.1 ENSMUSG00000108614 ENSMUST00000206512 2610306O10Rik TEC Interval_40359 chr12 104280956 104281721 + 0 NA Intergenic Intergenic 18181 ENSMUSG00000079014.4 ENSMUSG00000079014 ENSMUST00000109960 Serpina3i protein_coding Interval_94624 chr2 92774154 92774407 + 0 NA Intergenic Intergenic 32050 ENSMUSG00000085976.1 ENSMUSG00000085976 ENSMUST00000152230 Gm13816 lincRNA Interval_52055 chr14 34910807 34911067 + 0 NA intron (ENSMUSG00000041078.7, intron 2 of 15) protein_coding-intron (ENSMUSG00000041078.7, intron 2 of 15) 16328 ENSMUSG00000065481.1 ENSMUSG00000065481 ENSMUST00000083547 Mir346 miRNA Interval_129428 chr5 120114366 120114771 + 0 NA Intergenic Intergenic 24695 ENSMUSG00000097368.2 ENSMUSG00000097368 ENSMUST00000181905 Gm10390 antisense Interval_53556 chr14 59164496 59165492 + 0 NA intron (ENSMUSG00000053868.4, intron 1 of 1) protein_coding-intron (ENSMUSG00000053868.4, intron 1 of 1) 13755 ENSMUSG00000053868.4 ENSMUSG00000053868 ENSMUST00000066558 Gm5142 protein_coding Interval_164796 chr9 41953535 41954091 + 0 NA Intergenic Intergenic 30757 ENSMUSG00000049313.8 ENSMUSG00000049313 ENSMUST00000139133 Sorl1 protein_coding Interval_81135 chr18 54747878 54748163 + 0 NA Intergenic Intergenic -18112 ENSMUSG00000118307.1 ENSMUSG00000118307 ENSMUST00000235369 Gm5821 processed_pseudogene Interval_89199 chr2 18005072 18005856 + 0 NA Intergenic Intergenic -6959 ENSMUSG00000081116.1 ENSMUSG00000081116 ENSMUST00000117063 Gm13329 processed_pseudogene Interval_95505 chr2 110508357 110508542 + 0 NA Intergenic Intergenic 88188 ENSMUSG00000074970.1 ENSMUSG00000074970 ENSMUST00000099624 Gm10794 pseudogene Interval_17333 chr10 75935576 75936326 + 0 NA exon (ENSMUSG00000049422.7, exon 1 of 4) protein_coding-exon (ENSMUSG00000049422.7, exon 1 of 4) 545 ENSMUSG00000000901.17 ENSMUSG00000000901 ENSMUST00000219728 Mmp11 protein_coding Interval_125725 chr5 73620532 73621062 + 0 NA intron (ENSMUSG00000067206.3, intron 2 of 4) protein_coding-intron (ENSMUSG00000067206.3, intron 2 of 4) 9515 ENSMUSG00000067206.3 ENSMUSG00000067206 ENSMUST00000152215 Lrrc66 protein_coding Interval_83215 chr18 82811281 82813318 + 0 NA Intergenic Intergenic -43595 ENSMUSG00000097738.2 ENSMUSG00000097738 ENSMUST00000180631 4930445N18Rik lincRNA Interval_101411 chr2 181134022 181135589 + 0 NA exon (ENSMUSG00000016346.17, exon 1 of 17) protein_coding-exon (ENSMUSG00000016346.17, exon 1 of 17) 22209 ENSMUSG00000016349.10 ENSMUSG00000016349 ENSMUST00000055990 Eef1a2 protein_coding Interval_127310 chr5 102481047 102482189 + 0 NA promoter-TSS (ENSMUSG00000057315.14) protein_coding-promoter-TSS (ENSMUSG00000057315.14) -1622 ENSMUSG00000106586.1 ENSMUSG00000106586 ENSMUST00000200080 1700013M08Rik antisense Interval_42329 chr13 12149144 12149489 + 0 NA Intergenic Intergenic -11438 ENSMUSG00000113347.1 ENSMUSG00000113347 ENSMUST00000220496 Gm47323 processed_pseudogene Interval_169924 chr9 102995103 102995397 + 0 NA intron (ENSMUSG00000032548.14, intron 1 of 3) protein_coding-intron (ENSMUSG00000032548.14, intron 1 of 3) 3355 ENSMUSG00000084539.1 ENSMUSG00000084539 ENSMUST00000122590 Gm25842 misc_RNA Interval_103881 chr3 54377611 54378143 + 0 NA promoter-TSS (ENSMUSG00000027750.16) protein_coding-promoter-TSS (ENSMUSG00000027750.16) -5230 ENSMUSG00000027750.16 ENSMUSG00000027750 ENSMUST00000150868 Postn protein_coding Interval_66872 chr16 38239673 38240342 + 0 NA intron (ENSMUSG00000022812.14, intron 11 of 11) protein_coding-intron (ENSMUSG00000022812.14, intron 10 of 10) 31969 ENSMUSG00000022812.14 ENSMUSG00000022812 ENSMUST00000231437 Gsk3b protein_coding Interval_155578 chr8 34749742 34750064 + 0 NA Intergenic Intergenic -57394 ENSMUSG00000031530.6 ENSMUSG00000031530 ENSMUST00000033930 Dusp4 protein_coding Interval_33778 chr11 118445818 118446300 + 0 NA intron (ENSMUSG00000086514.1, intron 2 of 2) protein_coding-intron (ENSMUSG00000017446.14, intron 2 of 3) 2588 ENSMUSG00000017446.14 ENSMUSG00000017446 ENSMUST00000133558 C1qtnf1 protein_coding Interval_159667 chr8 96378113 96378584 + 0 NA intron (ENSMUSG00000110633.1, intron 3 of 5) lincRNA-intron (ENSMUSG00000110633.1, intron 3 of 5) 25514 ENSMUSG00000110633.1 ENSMUSG00000110633 ENSMUST00000212119 Gm32122 lincRNA Interval_59763 chr15 59097918 59098401 + 0 NA Intergenic Intergenic -16154 ENSMUSG00000022353.10 ENSMUSG00000022353 ENSMUST00000227797 Mtss1 protein_coding Interval_166756 chr9 62450984 62453620 + 0 NA TTS (ENSMUSG00000041729.15) protein_coding-TTS (ENSMUSG00000041729.15) -3154 ENSMUSG00000041729.15 ENSMUSG00000041729 ENSMUST00000123379 Coro2b protein_coding Interval_7352 chr1 130370317 130371340 + 0 NA Intergenic Intergenic 51912 ENSMUSG00000026401.15 ENSMUSG00000026401 ENSMUST00000136497 Cd55b protein_coding Interval_5533 chr1 89627396 89627872 + 0 NA intron (ENSMUSG00000055013.16, intron 4 of 17) protein_coding-intron (ENSMUSG00000055013.16, intron 3 of 17) 56260 ENSMUSG00000102009.6 ENSMUSG00000102009 ENSMUST00000187011 4933400F21Rik processed_transcript Interval_111300 chr4 18069185 18069695 + 0 NA intron (ENSMUSG00000028226.15, intron 7 of 11) protein_coding-intron (ENSMUSG00000028226.15, intron 6 of 9) -59213 ENSMUSG00000083387.1 ENSMUSG00000083387 ENSMUST00000122346 Gm11860 processed_pseudogene Interval_28247 chr11 74670964 74671263 + 0 NA TTS (ENSMUSG00000020741.17) protein_coding-TTS (ENSMUSG00000020741.17) 21573 ENSMUSG00000020741.17 ENSMUSG00000020741 ENSMUST00000128155 Cluh protein_coding Interval_5979 chr1 93693725 93694731 + 0 NA TTS (ENSMUSG00000026278.14) protein_coding-TTS (ENSMUSG00000026278.14) 8526 ENSMUSG00000026278.14 ENSMUSG00000026278 ENSMUST00000185685 Bok protein_coding Interval_75891 chr17 72805541 72806107 + 0 NA Intergenic Intergenic -31712 ENSMUSG00000039770.6 ENSMUSG00000039770 ENSMUST00000233662 Ypel5 protein_coding Interval_65335 chr16 21643915 21644807 + 0 NA TTS (ENSMUSG00000033653.18) protein_coding-TTS (ENSMUSG00000033653.18) 50219 ENSMUSG00000043391.10 ENSMUSG00000043391 ENSMUST00000232634 2510009E07Rik protein_coding Interval_38342 chr12 77540021 77540495 + 0 NA Intergenic Intergenic -13089 ENSMUSG00000112392.1 ENSMUSG00000112392 ENSMUST00000218335 Gm35240 lincRNA Interval_67195 chr16 44292162 44293441 + 0 NA intron (ENSMUSG00000022696.17, intron 1 of 4) protein_coding-intron (ENSMUSG00000022696.17, intron 3 of 25) -10303 ENSMUSG00000022696.17 ENSMUSG00000022696 ENSMUST00000124651 Sidt1 protein_coding Interval_157841 chr8 74859129 74859393 + 0 NA Intergenic Intergenic -14279 ENSMUSG00000031621.9 ENSMUSG00000031621 ENSMUST00000174427 Isx protein_coding Interval_34150 chr11 120921559 120922087 + 0 NA exon (ENSMUSG00000048445.6, exon 2 of 19) protein_coding-exon (ENSMUSG00000048445.6, exon 2 of 19) -27258 ENSMUSG00000025161.16 ENSMUSG00000025161 ENSMUST00000134540 Slc16a3 protein_coding Interval_64198 chr16 9036855 9037838 + 0 NA Intergenic Intergenic -12626 ENSMUSG00000116426.1 ENSMUSG00000116426 ENSMUST00000229201 Gm30567 lincRNA Interval_114347 chr4 74041721 74041890 + 0 NA intron (ENSMUSG00000049122.17, intron 1 of 14) protein_coding-intron (ENSMUSG00000049122.17, intron 1 of 13) -2583 ENSMUSG00000081048.1 ENSMUSG00000081048 ENSMUST00000122355 Gm11760 processed_pseudogene Interval_87334 chr19 47784142 47784765 + 0 NA intron (ENSMUSG00000044948.17, intron 15 of 37) protein_coding-intron (ENSMUSG00000044948.17, intron 15 of 37) -20873 ENSMUSG00000044948.17 ENSMUSG00000044948 ENSMUST00000159204 Cfap43 protein_coding Interval_138372 chr6 87705273 87707107 + 0 NA intron (ENSMUSG00000089997.2, intron 8 of 15) protein_coding-intron (ENSMUSG00000089997.2, intron 8 of 15) 16611 ENSMUSG00000089997.2 ENSMUSG00000089997 ENSMUST00000238521 1810020O05Rik protein_coding Interval_43404 chr13 30127423 30127675 + 0 NA Intergenic Intergenic 15075 ENSMUSG00000083676.2 ENSMUSG00000083676 ENSMUST00000117802 Gm11367 processed_pseudogene Interval_152499 chr7 133579469 133579736 + 0 NA Intergenic Intergenic 22556 ENSMUSG00000030976.3 ENSMUSG00000030976 ENSMUST00000033275 Tex36 protein_coding Interval_125757 chr5 73922785 73923306 + 0 NA Intergenic Intergenic 10149 ENSMUSG00000107027.1 ENSMUSG00000107027 ENSMUST00000202487 1700019F05Rik lincRNA Interval_124820 chr5 55567148 55567553 + 0 NA Intergenic Intergenic 17000 ENSMUSG00000105384.1 ENSMUSG00000105384 ENSMUST00000197506 Gm43396 processed_pseudogene Interval_13580 chr10 19913317 19914310 + 0 NA Intergenic Intergenic -6162 ENSMUSG00000020003.16 ENSMUSG00000020003 ENSMUST00000214951 Pex7 protein_coding Interval_122174 chr5 18793914 18794634 + 0 NA Intergenic Intergenic -19930 ENSMUSG00000105930.1 ENSMUSG00000105930 ENSMUST00000198410 Gm17889 processed_pseudogene Interval_61891 chr15 84981619 84981895 + 0 NA intron (ENSMUSG00000036046.14, intron 1 of 3) protein_coding-intron (ENSMUSG00000036046.14, intron 1 of 9) 6794 ENSMUSG00000036046.14 ENSMUSG00000036046 ENSMUST00000170863 5031439G07Rik protein_coding Interval_53314 chr14 56008149 56008377 + 0 NA Intergenic Intergenic 3052 ENSMUSG00000058581.7 ENSMUSG00000058581 ENSMUST00000182247 Gm5801 processed_pseudogene Interval_141280 chr6 126806928 126808583 + 0 NA intron (ENSMUSG00000118420.1, intron 1 of 5) transcribed_unitary_pseudogene-intron (ENSMUSG00000118420.1, intron 1 of 5) 2889 ENSMUSG00000118420.1 ENSMUSG00000118420 ENSMUST00000238440 Gm29788 transcribed_unitary_pseudogene Interval_76261 chr17 78580845 78581119 + 0 NA intron (ENSMUSG00000024076.10, intron 5 of 12) protein_coding-intron (ENSMUSG00000024076.10, intron 6 of 13) 7054 ENSMUSG00000024076.10 ENSMUSG00000024076 ENSMUST00000232864 Vit protein_coding Interval_65928 chr16 30297749 30298016 + 0 NA Intergenic Intergenic 12897 ENSMUSG00000047953.7 ENSMUSG00000047953 ENSMUST00000061190 Gp5 protein_coding Interval_84834 chr19 17309279 17309677 + 0 NA Intergenic Intergenic -43140 ENSMUSG00000117946.1 ENSMUSG00000117946 ENSMUST00000237419 Gm50280 processed_pseudogene Interval_54177 chr14 65987613 65988403 + 0 NA intron (ENSMUSG00000034450.8, intron 11 of 11) protein_coding-intron (ENSMUSG00000034450.8, intron 11 of 11) 18290 ENSMUSG00000022037.15 ENSMUSG00000022037 ENSMUST00000152903 Clu protein_coding Interval_133180 chr5 150377620 150379025 + 0 NA intron (ENSMUSG00000056602.12, intron 14 of 60) protein_coding-intron (ENSMUSG00000056602.12, intron 14 of 60) 63982 ENSMUSG00000118543.1 ENSMUSG00000118543 ENSMUST00000239092 AC154885.1 unprocessed_pseudogene Interval_91319 chr2 37758122 37758478 + 0 NA Intergenic Intergenic -32871 ENSMUSG00000035403.10 ENSMUSG00000035403 ENSMUST00000137693 Crb2 protein_coding Interval_68300 chr16 72711345 72711871 + 0 NA intron (ENSMUSG00000022883.11, intron 1 of 1) protein_coding-intron (ENSMUSG00000022883.11, intron 1 of 28) -264741 ENSMUSG00000022883.11 ENSMUSG00000022883 ENSMUST00000232432 Robo1 protein_coding Interval_159748 chr8 100734090 100734357 + 0 NA Intergenic Intergenic -7868 ENSMUSG00000109769.1 ENSMUSG00000109769 ENSMUST00000210760 Gm39232 lincRNA Interval_140544 chr6 119417270 119419629 + 0 NA promoter-TSS (ENSMUSG00000030168.13) protein_coding-promoter-TSS (ENSMUSG00000030168.13) -974 ENSMUSG00000030168.13 ENSMUSG00000030168 ENSMUST00000189710 Adipor2 protein_coding Interval_48829 chr13 103773783 103774903 + 0 NA promoter-TSS (ENSMUSG00000032621.8) protein_coding-promoter-TSS (ENSMUSG00000032621.8) -4995 ENSMUSG00000032621.8 ENSMUSG00000032621 ENSMUST00000211139 Srek1 protein_coding Interval_113445 chr4 55035057 55035531 + 0 NA intron (ENSMUSG00000060206.11, intron 7 of 12) protein_coding-intron (ENSMUSG00000060206.11, intron 5 of 10) -81269 ENSMUSG00000082704.1 ENSMUSG00000082704 ENSMUST00000120116 Gm12515 processed_pseudogene Interval_152474 chr7 133212389 133214012 + 0 NA Intergenic Intergenic 84949 ENSMUSG00000109816.1 ENSMUSG00000109816 ENSMUST00000209850 4930483O08Rik lincRNA Interval_174134 chrX 136045311 136046057 + 0 NA Intergenic Intergenic 12317 ENSMUSG00000048355.2 ENSMUSG00000048355 ENSMUST00000057625 Arxes1 protein_coding Interval_21020 chr10 123372032 123372572 + 0 NA intron (ENSMUSG00000044071.9, intron 1 of 4) protein_coding-intron (ENSMUSG00000044071.9, intron 1 of 5) -60264 ENSMUSG00000084461.1 ENSMUSG00000084461 ENSMUST00000122512 Gm22958 snRNA Interval_133629 chr6 7791278 7791991 + 0 NA Intergenic Intergenic 25240 ENSMUSG00000107394.1 ENSMUSG00000107394 ENSMUST00000203458 1700012J15Rik lincRNA Interval_22289 chr11 8556883 8557596 + 0 NA intron (ENSMUSG00000020422.14, intron 4 of 30) protein_coding-intron (ENSMUSG00000020422.14, intron 4 of 30) 107442 ENSMUSG00000020422.14 ENSMUSG00000020422 ENSMUST00000134823 Tns3 protein_coding Interval_167449 chr9 69439885 69440300 + 0 NA Intergenic Intergenic -2845 ENSMUSG00000111621.1 ENSMUSG00000111621 ENSMUST00000216464 Gm7802 processed_pseudogene Interval_2869 chr1 46970671 46971228 + 0 NA Intergenic Intergenic -74070 ENSMUSG00000100160.1 ENSMUSG00000100160 ENSMUST00000185210 Gm28527 processed_pseudogene Interval_134645 chr6 30135220 30136662 + 0 NA intron (ENSMUSG00000058440.14, intron 9 of 9) protein_coding-intron (ENSMUSG00000058440.14, intron 9 of 9) 8186 ENSMUSG00000065343.1 ENSMUSG00000065343 ENSMUST00000083409 Gm25580 misc_RNA Interval_28397 chr11 75651404 75652434 + 0 NA promoter-TSS (ENSMUSG00000017774.19) protein_coding-promoter-TSS (ENSMUSG00000017774.19) -18357 ENSMUSG00000017774.19 ENSMUSG00000017774 ENSMUST00000155027 Myo1c protein_coding Interval_124658 chr5 52902460 52902847 + 0 NA Intergenic Intergenic 16556 ENSMUSG00000105054.1 ENSMUSG00000105054 ENSMUST00000196038 Gm43664 processed_pseudogene Interval_167349 chr9 67683206 67684264 + 0 NA Intergenic Intergenic -16446 ENSMUSG00000111819.1 ENSMUSG00000111819 ENSMUST00000216655 Gm47110 processed_pseudogene Interval_148160 chr7 79552815 79553321 + 0 NA intron (ENSMUSG00000108616.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000108616.1, intron 1 of 1) 17025 ENSMUSG00000108616.1 ENSMUSG00000108616 ENSMUST00000206829 Gm35040 lincRNA Interval_56990 chr15 3272714 3273294 + 0 NA intron (ENSMUSG00000064373.12, intron 2 of 3) protein_coding-intron (ENSMUSG00000064373.12, intron 1 of 4) 919 ENSMUSG00000064373.12 ENSMUSG00000064373 ENSMUST00000160930 Selenop protein_coding Interval_144596 chr7 26738741 26739316 + 0 NA exon (ENSMUSG00000108692.1, exon 2 of 3) unprocessed_pseudogene-exon (ENSMUSG00000108692.1, exon 2 of 3) 445 ENSMUSG00000108692.1 ENSMUSG00000108692 ENSMUST00000206831 Gm45034 unprocessed_pseudogene Interval_140037 chr6 113564111 113564407 + 0 NA TTS (ENSMUSG00000107786.1) processed_pseudogene-TTS (ENSMUSG00000107786.1) 606 ENSMUSG00000107786.1 ENSMUSG00000107786 ENSMUST00000204537 Gm44232 processed_pseudogene Interval_116933 chr4 118300786 118301010 + 0 NA Intergenic Intergenic -9624 ENSMUSG00000033295.14 ENSMUSG00000033295 ENSMUST00000222620 Ptprf protein_coding Interval_12009 chr1 188784811 188785834 + 0 NA intron (ENSMUSG00000026609.15, intron 48 of 70) protein_coding-intron (ENSMUSG00000026609.15, intron 48 of 70) 24846 ENSMUSG00000084550.1 ENSMUSG00000084550 ENSMUST00000122601 Gm25269 snRNA Interval_153290 chr7 143355858 143356547 + 0 NA intron (ENSMUSG00000101360.2, intron 1 of 3) protein_coding-intron (ENSMUSG00000009545.14, intron 11 of 15) -2290 ENSMUSG00000104485.1 ENSMUSG00000104485 ENSMUST00000193147 Gm38065 TEC Interval_156426 chr8 48068009 48068258 + 0 NA Intergenic Intergenic 2495 ENSMUSG00000110544.1 ENSMUSG00000110544 ENSMUST00000212389 Gm2607 processed_pseudogene Interval_139352 chr6 99263291 99263957 + 0 NA intron (ENSMUSG00000030067.17, intron 3 of 3) protein_coding-intron (ENSMUSG00000030067.17, intron 1 of 3) 124875 ENSMUSG00000093559.1 ENSMUSG00000093559 ENSMUST00000177278 Gm20705 sense_intronic Interval_107466 chr3 107905586 107906582 + 0 NA TTS (ENSMUSG00000105872.1) unprocessed_pseudogene-TTS (ENSMUSG00000105872.1) 5165 ENSMUSG00000105872.1 ENSMUSG00000105872 ENSMUST00000200276 Gm9515 unprocessed_pseudogene Interval_85625 chr19 29145019 29145280 + 0 NA Intergenic Intergenic 9870 ENSMUSG00000065556.1 ENSMUSG00000065556 ENSMUST00000083622 Mir101b miRNA Interval_86149 chr19 37075690 37075936 + 0 NA intron (ENSMUSG00000039652.16, intron 7 of 10) protein_coding-intron (ENSMUSG00000039652.16, intron 7 of 10) 73349 ENSMUSG00000080544.1 ENSMUSG00000080544 ENSMUST00000116894 Gm22714 ribozyme Interval_101096 chr2 177925196 177926400 + 0 NA promoter-TSS (ENSMUSG00000074529.10) protein_coding-promoter-TSS (ENSMUSG00000074529.10) -3983 ENSMUSG00000074529.10 ENSMUSG00000074529 ENSMUST00000108986 Zfp972 protein_coding Interval_122654 chr5 24484895 24486291 + 0 NA intron (ENSMUSG00000023353.14, intron 2 of 8) protein_coding-intron (ENSMUSG00000023353.14, intron 9 of 17) 33386 ENSMUSG00000023353.14 ENSMUSG00000023353 ENSMUST00000199250 Agap3 protein_coding Interval_167121 chr9 65496156 65496861 + 0 NA intron (ENSMUSG00000066510.5, intron 1 of 2) protein_coding-intron (ENSMUSG00000066510.5, intron 1 of 2) 23685 ENSMUSG00000066510.5 ENSMUSG00000066510 ENSMUST00000217646 Ankdd1a protein_coding Interval_170045 chr9 104034972 104036230 + 0 NA promoter-TSS (ENSMUSG00000032558.19) protein_coding-promoter-TSS (ENSMUSG00000032558.19) -5021 ENSMUSG00000032558.19 ENSMUSG00000032558 ENSMUST00000216593 Nphp3 protein_coding Interval_158000 chr8 77782414 77782653 + 0 NA Intergenic Intergenic -25002 ENSMUSG00000087761.1 ENSMUSG00000087761 ENSMUST00000157136 Gm23981 snRNA Interval_132208 chr5 143356271 143358116 + 0 NA promoter-TSS (ENSMUSG00000010825.17) protein_coding-promoter-TSS (ENSMUSG00000010825.17) -15781 ENSMUSG00000010825.17 ENSMUSG00000010825 ENSMUST00000138948 Grid2ip protein_coding Interval_137332 chr6 71426902 71427098 + 0 NA intron (ENSMUSG00000002222.14, intron 2 of 8) protein_coding-intron (ENSMUSG00000002222.14, intron 2 of 8) 8107 ENSMUSG00000108211.1 ENSMUSG00000108211 ENSMUST00000205157 Gm44130 TEC Interval_158744 chr8 85769831 85770041 + 0 NA intron (ENSMUSG00000031703.8, intron 8 of 17) protein_coding-intron (ENSMUSG00000031703.8, intron 8 of 17) 39120 ENSMUSG00000109754.1 ENSMUSG00000109754 ENSMUST00000210912 Gm39214 lincRNA Interval_92016 chr2 52592763 52593086 + 0 NA intron (ENSMUSG00000017412.15, intron 2 of 13) protein_coding-intron (ENSMUSG00000017412.15, intron 2 of 13) -26830 ENSMUSG00000025201.7 ENSMUSG00000025201 ENSMUST00000183232 Bloc1s2-ps processed_pseudogene Interval_58629 chr15 36687684 36688937 + 0 NA intron (ENSMUSG00000115127.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000115127.1, intron 1 of 1) -1793 ENSMUSG00000115834.1 ENSMUSG00000115834 ENSMUST00000226323 Gm10385 lincRNA Interval_159647 chr8 95991802 95992532 + 0 NA Intergenic Intergenic 70638 ENSMUSG00000110506.1 ENSMUSG00000110506 ENSMUST00000212919 Gm8637 processed_pseudogene Interval_107600 chr3 108809212 108809464 + 0 NA TTS (ENSMUSG00000027882.18) protein_coding-TTS (ENSMUSG00000027882.18) 31177 ENSMUSG00000027882.18 ENSMUSG00000027882 ENSMUST00000106596 Stxbp3 protein_coding Interval_17053 chr10 70890287 70890750 + 0 NA intron (ENSMUSG00000047692.6, intron 3 of 5) antisense-intron (ENSMUSG00000047692.6, intron 3 of 6) 8414 ENSMUSG00000094703.1 ENSMUSG00000094703 ENSMUST00000178420 Gm24486 snRNA Interval_64722 chr16 14472982 14473231 + 0 NA intron (ENSMUSG00000023088.17, intron 30 of 30) protein_coding-intron (ENSMUSG00000023088.17, intron 30 of 30) 10640 ENSMUSG00000116439.1 ENSMUSG00000116439 ENSMUST00000231182 Gm49528 unprocessed_pseudogene Interval_6026 chr1 94079028 94079459 + 0 NA Intergenic Intergenic -26690 ENSMUSG00000026285.7 ENSMUSG00000026285 ENSMUST00000027507 Pdcd1 protein_coding Interval_43243 chr13 26691775 26692042 + 0 NA Intergenic Intergenic -11215 ENSMUSG00000114225.1 ENSMUSG00000114225 ENSMUST00000224183 Gm47883 processed_pseudogene Interval_130844 chr5 131239844 131240324 + 0 NA intron (ENSMUSG00000034040.16, intron 1 of 1) protein_coding-intron (ENSMUSG00000034040.16, intron 1 of 10) 67994 ENSMUSG00000034040.16 ENSMUSG00000034040 ENSMUST00000162966 Galnt17 protein_coding Interval_31011 chr11 97697881 97700634 + 0 NA exon (ENSMUSG00000018537.16, exon 3 of 13) protein_coding-exon (ENSMUSG00000018537.16, exon 3 of 13) 127 ENSMUSG00000018537.16 ENSMUSG00000018537 ENSMUST00000126185 Pcgf2 protein_coding Interval_27345 chr11 66815837 66816132 + 0 NA Intergenic Intergenic -95997 ENSMUSG00000048070.4 ENSMUSG00000048070 ENSMUST00000123434 Pirt protein_coding Interval_117514 chr4 124319215 124319445 + 0 NA Intergenic Intergenic -7869 ENSMUSG00000086955.1 ENSMUSG00000086955 ENSMUST00000153719 1700021L23Rik lincRNA Interval_112824 chr4 45312871 45313141 + 0 NA intron (ENSMUSG00000035601.9, intron 5 of 6) protein_coding-intron (ENSMUSG00000035601.9, intron 7 of 8) -1092 ENSMUSG00000035601.9 ENSMUSG00000035601 ENSMUST00000145756 Trmt10b protein_coding Interval_75621 chr17 69421744 69423346 + 0 NA TTS (ENSMUSG00000073374.3) lincRNA-TTS (ENSMUSG00000073374.3) 5143 ENSMUSG00000073374.3 ENSMUSG00000073374 ENSMUST00000097289 C030034I22Rik lincRNA Interval_163211 chr9 18329358 18329917 + 0 NA intron (ENSMUSG00000043943.14, intron 19 of 21) protein_coding-intron (ENSMUSG00000043943.14, intron 18 of 20) -28986 ENSMUSG00000110816.1 ENSMUSG00000110816 ENSMUST00000217524 Gm19178 processed_pseudogene Interval_167396 chr9 68664373 68664646 + 0 NA TTS (ENSMUSG00000032238.17) protein_coding-TTS (ENSMUSG00000032238.17) 10618 ENSMUSG00000032238.17 ENSMUSG00000032238 ENSMUST00000113624 Rora protein_coding Interval_95012 chr2 103012771 103013042 + 0 NA Intergenic Intergenic 60429 ENSMUSG00000010914.10 ENSMUSG00000010914 ENSMUST00000111183 Pdhx protein_coding Interval_149270 chr7 96835935 96836475 + 0 NA intron (ENSMUSG00000048078.16, intron 4 of 5) protein_coding-intron (ENSMUSG00000048078.16, intron 19 of 32) -17899 ENSMUSG00000108635.1 ENSMUSG00000108635 ENSMUST00000205925 Gm44633 antisense Interval_78978 chr18 23515175 23516858 + 0 NA intron (ENSMUSG00000024302.16, intron 2 of 4) protein_coding-intron (ENSMUSG00000024302.16, intron 2 of 11) 19181 ENSMUSG00000024302.16 ENSMUSG00000024302 ENSMUST00000222726 Dtna protein_coding Interval_130396 chr5 127301883 127302073 + 0 NA intron (ENSMUSG00000034324.16, intron 1 of 8) protein_coding-intron (ENSMUSG00000034324.16, intron 1 of 8) -7039 ENSMUSG00000104971.1 ENSMUSG00000104971 ENSMUST00000196548 9430087B13Rik TEC Interval_17600 chr10 78096369 78097397 + 0 NA Intergenic Intergenic 23544 ENSMUSG00000000732.9 ENSMUSG00000000732 ENSMUST00000219633 Icosl protein_coding Interval_38826 chr12 83027077 83027399 + 0 NA intron (ENSMUSG00000021219.16, intron 3 of 16) protein_coding-intron (ENSMUSG00000021219.16, intron 2 of 14) -66081 ENSMUSG00000102249.1 ENSMUSG00000102249 ENSMUST00000193863 4930423C22Rik TEC Interval_125408 chr5 66745135 66747085 + 0 NA exon (ENSMUSG00000037736.20, exon 1 of 1) protein_coding-exon (ENSMUSG00000037736.20, exon 1 of 1) 27740 ENSMUSG00000107284.1 ENSMUSG00000107284 ENSMUST00000202958 Gm43280 TEC Interval_86813 chr19 44042505 44042743 + 0 NA intron (ENSMUSG00000025198.16, intron 8 of 10) protein_coding-intron (ENSMUSG00000025198.16, intron 9 of 11) -13416 ENSMUSG00000025197.9 ENSMUSG00000025197 ENSMUST00000211830 Cyp2c23 protein_coding Interval_141630 chr6 131478046 131478491 + 0 NA Intergenic Intergenic -8132 ENSMUSG00000095577.2 ENSMUSG00000095577 ENSMUST00000159229 Gm6619 protein_coding Interval_148968 chr7 90502216 90502409 + 0 NA intron (ENSMUSG00000052572.19, intron 2 of 27) protein_coding-intron (ENSMUSG00000052572.19, intron 2 of 2) -26317 ENSMUSG00000030614.8 ENSMUSG00000030614 ENSMUST00000123622 Tmem126b protein_coding Interval_3783 chr1 63074458 63075275 + 0 NA TTS (ENSMUSG00000081429.1) processed_pseudogene-TTS (ENSMUSG00000081429.1) 1092 ENSMUSG00000081429.1 ENSMUSG00000081429 ENSMUST00000118179 Rps27-ps1 processed_pseudogene Interval_30281 chr11 92840795 92841009 + 0 NA Intergenic Intergenic -47623 ENSMUSG00000081141.1 ENSMUSG00000081141 ENSMUST00000118039 Gm11501 processed_pseudogene Interval_94630 chr2 92829641 92830184 + 0 NA Intergenic Intergenic 43397 ENSMUSG00000082700.1 ENSMUSG00000082700 ENSMUST00000121350 Gm13792 processed_pseudogene Interval_35157 chr12 17652615 17652851 + 0 NA Intergenic Intergenic -7528 ENSMUSG00000088939.1 ENSMUSG00000088939 ENSMUST00000158314 Gm25925 misc_RNA Interval_58665 chr15 36892284 36893393 + 0 NA Intergenic Intergenic -13022 ENSMUSG00000072618.2 ENSMUSG00000072618 ENSMUST00000100713 Gm10384 lincRNA Interval_142978 chr6 147952248 147952510 + 0 NA Intergenic Intergenic 94960 ENSMUSG00000086777.3 ENSMUSG00000086777 ENSMUST00000149815 Far2os2 antisense Interval_65074 chr16 18876080 18878339 + 0 NA promoter-TSS (ENSMUSG00000022706.16) protein_coding-promoter-TSS (ENSMUSG00000022706.16) -600 ENSMUSG00000022706.16 ENSMUSG00000022706 ENSMUST00000232123 Mrpl40 protein_coding Interval_125673 chr5 73182889 73183643 + 0 NA intron (ENSMUSG00000070733.13, intron 3 of 11) protein_coding-intron (ENSMUSG00000070733.13, intron 3 of 62) 7151 ENSMUSG00000107109.1 ENSMUSG00000107109 ENSMUST00000201197 Gm42571 TEC Interval_116154 chr4 108195801 108196690 + 0 NA exon (ENSMUSG00000034645.14, exon 5 of 14) protein_coding-exon (ENSMUSG00000034645.14, exon 5 of 14) 21677 ENSMUSG00000034645.14 ENSMUSG00000034645 ENSMUST00000106690 Zyg11a protein_coding Interval_112960 chr4 46473868 46476119 + 0 NA Intergenic Intergenic -14381 ENSMUSG00000028334.10 ENSMUSG00000028334 ENSMUST00000137874 Nans protein_coding Interval_5467 chr1 89063145 89063435 + 0 NA Intergenic Intergenic -7163 ENSMUSG00000036206.12 ENSMUSG00000036206 ENSMUST00000123745 Sh3bp4 protein_coding Interval_96288 chr2 121314999 121316044 + 0 NA intron (ENSMUSG00000033526.16, intron 29 of 29) protein_coding-intron (ENSMUSG00000033526.16, intron 29 of 29) -19513 ENSMUSG00000087704.1 ENSMUSG00000087704 ENSMUST00000129000 Gm14978 antisense Interval_138689 chr6 91186517 91186993 + 0 NA Intergenic Intergenic -12737 ENSMUSG00000108158.1 ENSMUSG00000108158 ENSMUST00000205134 Gm44002 TEC Interval_92258 chr2 57378383 57379269 + 0 NA Intergenic Intergenic 46883 ENSMUSG00000084338.5 ENSMUSG00000084338 ENSMUST00000121893 Gm13531 processed_pseudogene Interval_100693 chr2 171675599 171675803 + 0 NA Intergenic Intergenic 286430 ENSMUSG00000086823.7 ENSMUSG00000086823 ENSMUST00000125465 1700028P15Rik processed_transcript Interval_52252 chr14 41034945 41035704 + 0 NA Intergenic Intergenic -18329 ENSMUSG00000114196.1 ENSMUSG00000114196 ENSMUST00000224095 Gm47547 antisense Interval_144326 chr7 24496381 24496634 + 0 NA intron (ENSMUSG00000054793.8, intron 1 of 8) protein_coding-intron (ENSMUSG00000054793.8, intron 1 of 8) -3454 ENSMUSG00000054793.8 ENSMUSG00000054793 ENSMUST00000205820 Cadm4 protein_coding Interval_71657 chr17 25183524 25185149 + 0 NA promoter-TSS (ENSMUSG00000067722.4) protein_coding-promoter-TSS (ENSMUSG00000067722.4) -218 ENSMUSG00000067722.4 ENSMUSG00000067722 ENSMUST00000232784 BC003965 protein_coding Interval_35931 chr12 32111054 32111739 + 0 NA intron (ENSMUSG00000112071.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000112071.1, intron 1 of 1) 12306 ENSMUSG00000112071.1 ENSMUSG00000112071 ENSMUST00000218836 5430401H09Rik lincRNA Interval_109788 chr3 147048364 147048678 + 0 NA Intergenic Intergenic -47663 ENSMUSG00000103334.1 ENSMUSG00000103334 ENSMUST00000193142 Gm29771 lincRNA Interval_128015 chr5 110292543 110293161 + 0 NA intron (ENSMUSG00000007080.14, intron 6 of 23) protein_coding-intron (ENSMUSG00000007080.14, intron 6 of 48) -6831 ENSMUSG00000029499.11 ENSMUSG00000029499 ENSMUST00000126882 Pxmp2 protein_coding Interval_114603 chr4 83021402 83021991 + 0 NA promoter-TSS (ENSMUSG00000059049.14) protein_coding-promoter-TSS (ENSMUSG00000059049.14) 30471 ENSMUSG00000059049.14 ENSMUSG00000059049 ENSMUST00000131102 Frem1 protein_coding Interval_118347 chr4 130791777 130793257 + 0 NA promoter-TSS (ENSMUSG00000025743.14) protein_coding-promoter-TSS (ENSMUSG00000025743.14) 6448 ENSMUSG00000086548.1 ENSMUSG00000086548 ENSMUST00000152986 Gm12972 lincRNA Interval_138794 chr6 91916523 91917019 + 0 NA intron (ENSMUSG00000034063.8, intron 5 of 19) protein_coding-intron (ENSMUSG00000034063.8, intron 2 of 16) 13962 ENSMUSG00000034063.8 ENSMUSG00000034063 ENSMUST00000205569 4930590J08Rik protein_coding Interval_21037 chr10 124749562 124749790 + 0 NA Intergenic Intergenic 95805 ENSMUSG00000112130.1 ENSMUSG00000112130 ENSMUST00000217909 Gm47839 lincRNA Interval_107287 chr3 105450483 105453184 + 0 NA promoter-TSS (ENSMUSG00000040896.16) protein_coding-promoter-TSS (ENSMUSG00000040896.16) -106 ENSMUSG00000074346.6 ENSMUSG00000074346 ENSMUST00000130683 Kcnd3os antisense Interval_72750 chr17 31915829 31916701 + 0 NA Intergenic Intergenic 3599 ENSMUSG00000117980.1 ENSMUSG00000117980 ENSMUST00000237005 Gm30571 TEC Interval_61756 chr15 83870702 83871180 + 0 NA exon (ENSMUSG00000022441.17, exon 13 of 15) protein_coding-exon (ENSMUSG00000022441.17, exon 13 of 15) 75658 ENSMUSG00000022441.17 ENSMUSG00000022441 ENSMUST00000122836 Efcab6 protein_coding Interval_79036 chr18 24099082 24101819 + 0 NA Intergenic Intergenic -18526 ENSMUSG00000117500.1 ENSMUSG00000117500 ENSMUST00000234749 Gm18085 processed_pseudogene Interval_75776 chr17 71255932 71256875 + 0 NA promoter-TSS (ENSMUSG00000024053.11) protein_coding-promoter-TSS (ENSMUSG00000024053.11) 53878 ENSMUSG00000024053.11 ENSMUSG00000024053 ENSMUST00000233659 Emilin2 protein_coding Interval_23921 chr11 28353421 28354249 + 0 NA Intergenic Intergenic -6527 ENSMUSG00000084905.1 ENSMUSG00000084905 ENSMUST00000152849 Gm12081 antisense Interval_26819 chr11 60836619 60837566 + 0 NA intron (ENSMUSG00000042569.13, intron 1 of 6) protein_coding-intron (ENSMUSG00000042569.13, intron 1 of 6) 6413 ENSMUSG00000042569.13 ENSMUSG00000042569 ENSMUST00000108718 Dhrs7b protein_coding Interval_131216 chr5 135867582 135870285 + 0 NA TTS (ENSMUSG00000039860.19) protein_coding-TTS (ENSMUSG00000039860.19) 2316 ENSMUSG00000039860.19 ENSMUSG00000039860 ENSMUST00000150566 Srrm3 protein_coding Interval_133642 chr6 7941656 7941860 + 0 NA Intergenic Intergenic 41625 ENSMUSG00000096403.2 ENSMUSG00000096403 ENSMUST00000178598 Rnps1-ps processed_pseudogene Interval_50926 chr14 20793344 20794638 + 0 NA promoter-TSS (ENSMUSG00000021820.18) protein_coding-promoter-TSS (ENSMUSG00000021820.18) -25 ENSMUSG00000021820.18 ENSMUSG00000021820 ENSMUST00000225635 Camk2g protein_coding Interval_46594 chr13 67437361 67437900 + 0 NA intron (ENSMUSG00000069206.14, intron 3 of 4) protein_coding-intron (ENSMUSG00000069206.14, intron 3 of 4) 11848 ENSMUSG00000069206.14 ENSMUSG00000069206 ENSMUST00000225414 Zfp874a protein_coding Interval_167944 chr9 74847420 74849764 + 0 NA promoter-TSS (ENSMUSG00000066477.13) processed_transcript-promoter-TSS (ENSMUSG00000066477.13) 89 ENSMUSG00000066477.13 ENSMUSG00000066477 ENSMUST00000160842 Gm16551 processed_transcript Interval_66688 chr16 36154173 36154467 + 0 NA Intergenic Intergenic -2491 ENSMUSG00000059657.5 ENSMUSG00000059657 ENSMUST00000079184 Stfa2l1 protein_coding Interval_161604 chr8 121531197 121532976 + 0 NA intron (ENSMUSG00000031809.10, intron 5 of 6) protein_coding-intron (ENSMUSG00000031809.10, intron 5 of 6) 9783 ENSMUSG00000031809.10 ENSMUSG00000031809 ENSMUST00000182460 1700018B08Rik protein_coding Interval_57432 chr15 10749906 10750427 + 0 NA intron (ENSMUSG00000096971.2, intron 2 of 6) processed_transcript-intron (ENSMUSG00000096971.2, intron 2 of 6) 35266 ENSMUSG00000096971.2 ENSMUSG00000096971 ENSMUST00000181739 4930556M19Rik processed_transcript Interval_109237 chr3 138162587 138163048 + 0 NA Intergenic Intergenic -17849 ENSMUSG00000028158.14 ENSMUSG00000028158 ENSMUST00000197680 Mttp protein_coding Interval_23913 chr11 28239724 28240393 + 0 NA Intergenic Intergenic 99756 ENSMUSG00000032889.7 ENSMUSG00000032889 ENSMUST00000042595 Gm6685 processed_pseudogene Interval_3408 chr1 58051993 58052278 + 0 NA intron (ENSMUSG00000063558.4, intron 5 of 14) protein_coding-intron (ENSMUSG00000063558.4, intron 5 of 34) 22171 ENSMUSG00000063558.4 ENSMUSG00000063558 ENSMUST00000160168 Aox1 protein_coding Interval_62170 chr15 88498005 88498269 + 0 NA Intergenic Intergenic -102165 ENSMUSG00000054117.8 ENSMUSG00000054117 ENSMUST00000066949 Zdhhc25 protein_coding Interval_2206 chr1 37028993 37029760 + 0 NA promoter-TSS (ENSMUSG00000050122.19) protein_coding-promoter-TSS (ENSMUSG00000050122.19) 43 ENSMUSG00000050122.19 ENSMUSG00000050122 ENSMUST00000194320 Vwa3b protein_coding Interval_29882 chr11 87490245 87490972 + 0 NA intron (ENSMUSG00000010342.16, intron 5 of 30) protein_coding-intron (ENSMUSG00000010342.16, intron 5 of 30) 19240 ENSMUSG00000105115.1 ENSMUSG00000105115 ENSMUST00000196353 Rnu3b2 snoRNA Interval_133429 chr6 4979943 4980783 + 0 NA intron (ENSMUSG00000032827.15, intron 1 of 17) protein_coding-intron (ENSMUSG00000032827.15, intron 2 of 15) 21380 ENSMUSG00000097396.1 ENSMUSG00000097396 ENSMUST00000180645 Gm26556 TEC Interval_121909 chr5 9446309 9446641 + 0 NA intron (ENSMUSG00000056004.16, intron 16 of 21) protein_coding-intron (ENSMUSG00000056004.16, intron 16 of 21) 70771 ENSMUSG00000077896.1 ENSMUSG00000077896 ENSMUST00000104703 Mir879 miRNA Interval_127877 chr5 108502659 108503876 + 0 NA exon (ENSMUSG00000033623.13, exon 11 of 11) protein_coding-exon (ENSMUSG00000033623.13, exon 11 of 11) -13912 ENSMUSG00000060730.8 ENSMUSG00000060730 ENSMUST00000136334 Gm10086 processed_pseudogene Interval_156961 chr8 62514370 62514571 + 0 NA Intergenic Intergenic -25180 ENSMUSG00000109895.1 ENSMUSG00000109895 ENSMUST00000209710 Gm2975 processed_pseudogene Interval_68472 chr16 77500024 77500515 + 0 NA promoter-TSS (ENSMUSG00000090386.10) processed_transcript-promoter-TSS (ENSMUSG00000090386.10) 14223 ENSMUSG00000102575.1 ENSMUSG00000102575 ENSMUST00000191736 Gm37241 TEC Interval_70302 chr17 8359401 8359807 + 0 NA intron (ENSMUSG00000058159.14, intron 1 of 9) processed_transcript-intron (ENSMUSG00000117569.1, intron 1 of 5) 2841 ENSMUSG00000116860.1 ENSMUSG00000116860 ENSMUST00000231491 Gm46593 processed_pseudogene Interval_39984 chr12 100235161 100236084 + 0 NA Intergenic Intergenic 4630 ENSMUSG00000113362.1 ENSMUSG00000113362 ENSMUST00000220782 Gm40557 lincRNA Interval_157916 chr8 75755262 75756085 + 0 NA intron (ENSMUSG00000031620.16, intron 11 of 13) protein_coding-intron (ENSMUSG00000031620.16, intron 10 of 12) -42477 ENSMUSG00000101431.1 ENSMUSG00000101431 ENSMUST00000120430 Gm7901 processed_pseudogene Interval_100026 chr2 166599440 166599808 + 0 NA TTS (ENSMUSG00000039621.13) protein_coding-TTS (ENSMUSG00000039621.13) 55518 ENSMUSG00000093063.1 ENSMUSG00000093063 ENSMUST00000175322 Gm23152 rRNA Interval_145476 chr7 35064171 35065528 + 0 NA intron (ENSMUSG00000108739.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000108739.1, intron 1 of 1) 1884 ENSMUSG00000108739.1 ENSMUSG00000108739 ENSMUST00000205833 Gm45096 lincRNA Interval_141754 chr6 134240915 134241458 + 0 NA intron (ENSMUSG00000092134.1, intron 2 of 3) protein_coding-intron (ENSMUSG00000030199.16, intron 4 of 7) 2525 ENSMUSG00000092134.1 ENSMUSG00000092134 ENSMUST00000171098 Gm17089 antisense Interval_99498 chr2 162621663 162621938 + 0 NA intron (ENSMUSG00000053141.16, intron 1 of 29) protein_coding-intron (ENSMUSG00000053141.16, intron 1 of 30) -39363 ENSMUSG00000054457.5 ENSMUSG00000054457 ENSMUST00000145985 9430021M05Rik processed_transcript Interval_31418 chr11 100564246 100564835 + 0 NA intron (ENSMUSG00000006784.14, intron 9 of 9) protein_coding-intron (ENSMUSG00000006784.14, intron 9 of 10) 5083 ENSMUSG00000118532.1 ENSMUSG00000118532 ENSMUST00000239071 BX842667.1 unprocessed_pseudogene Interval_135659 chr6 42450741 42451084 + 0 NA Intergenic Intergenic -6981 ENSMUSG00000108150.1 ENSMUSG00000108150 ENSMUST00000203913 Gm44470 unprocessed_pseudogene Interval_93528 chr2 73818613 73819456 + 0 NA exon (ENSMUSG00000027104.18, exon 14 of 14) protein_coding-exon (ENSMUSG00000027104.18, exon 14 of 14) 8797 ENSMUSG00000099302.1 ENSMUSG00000099302 ENSMUST00000184729 Gm27421 misc_RNA Interval_2203 chr1 37001536 37002353 + 0 NA Intergenic Intergenic -3495 ENSMUSG00000095944.1 ENSMUSG00000095944 ENSMUST00000177688 n-R5s210 rRNA Interval_54622 chr14 72305211 72305414 + 0 NA Intergenic Intergenic -109616 ENSMUSG00000115061.1 ENSMUSG00000115061 ENSMUST00000228357 Gm49290 processed_pseudogene Interval_38330 chr12 77300382 77300784 + 0 NA intron (ENSMUSG00000021065.16, intron 3 of 12) protein_coding-intron (ENSMUSG00000021065.16, intron 2 of 11) -61920 ENSMUSG00000112150.1 ENSMUSG00000112150 ENSMUST00000219513 9530018F02Rik bidirectional_promoter_lncRNA Interval_83954 chr19 5796721 5796918 + 0 NA exon (ENSMUSG00000092341.3, exon 1 of 1) lincRNA-exon (ENSMUSG00000092341.3, exon 1 of 1) 133 ENSMUSG00000092341.3 ENSMUSG00000092341 ENSMUST00000173499 Malat1 lincRNA Interval_10427 chr1 170791641 170792105 + 0 NA TTS (ENSMUSG00000026663.6) protein_coding-TTS (ENSMUSG00000026663.6) 2498 ENSMUSG00000026663.6 ENSMUSG00000026663 ENSMUST00000182787 Atf6 protein_coding Interval_63839 chr16 3908354 3909532 + 0 NA promoter-TSS (ENSMUSG00000005983.15) protein_coding-promoter-TSS (ENSMUSG00000005983.15) 142 ENSMUSG00000014232.14 ENSMUSG00000014232 ENSMUST00000124849 Cluap1 protein_coding Interval_5676 chr1 90841471 90841682 + 0 NA intron (ENSMUSG00000048126.16, intron 1 of 40) protein_coding-intron (ENSMUSG00000048126.16, intron 1 of 43) 2395 ENSMUSG00000048126.16 ENSMUSG00000048126 ENSMUST00000187753 Col6a3 protein_coding Interval_138616 chr6 90461866 90464318 + 0 NA intron (ENSMUSG00000030087.11, intron 1 of 2) protein_coding-intron (ENSMUSG00000030087.11, intron 1 of 2) -1624 ENSMUSG00000107605.1 ENSMUSG00000107605 ENSMUST00000204442 Gm44117 lincRNA Interval_111619 chr4 24661044 24661503 + 0 NA intron (ENSMUSG00000040387.16, intron 6 of 10) protein_coding-intron (ENSMUSG00000040387.16, intron 5 of 9) 82692 ENSMUSG00000040387.16 ENSMUSG00000040387 ENSMUST00000144062 Klhl32 protein_coding Interval_133895 chr6 14499392 14500924 + 0 NA Intergenic Intergenic -43008 ENSMUSG00000077334.1 ENSMUSG00000077334 ENSMUST00000104146 Gm23013 snRNA Interval_130522 chr5 128552332 128553215 + 0 NA Intergenic Intergenic 32552 ENSMUSG00000105172.1 ENSMUSG00000105172 ENSMUST00000196193 Gm42499 TEC Interval_165389 chr9 47280544 47281291 + 0 NA intron (ENSMUSG00000109844.2, intron 3 of 5) lincRNA-intron (ENSMUSG00000109844.2, intron 3 of 5) -10174 ENSMUSG00000109844.2 ENSMUSG00000109844 ENSMUST00000209906 Gm31816 lincRNA Interval_19653 chr10 107169234 107169497 + 0 NA Intergenic Intergenic 32391 ENSMUSG00000088465.1 ENSMUSG00000088465 ENSMUST00000157840 Gm24745 snoRNA Interval_65310 chr16 21422800 21423796 + 0 NA promoter-TSS (ENSMUSG00000033653.18) protein_coding-promoter-TSS (ENSMUSG00000033653.18) -90169 ENSMUSG00000116632.1 ENSMUSG00000116632 ENSMUST00000231972 Magef1 transcribed_processed_pseudogene Interval_128448 chr5 113367618 113368183 + 0 NA Intergenic Intergenic 10606 ENSMUSG00000053873.1 ENSMUSG00000053873 ENSMUST00000066573 Aym1 protein_coding Interval_77606 chr17 92975157 92975427 + 0 NA Intergenic Intergenic -1229 ENSMUSG00000117409.1 ENSMUSG00000117409 ENSMUST00000234475 Gm49996 processed_pseudogene Interval_77314 chr17 87985769 87986623 + 0 NA exon (ENSMUSG00000005370.4, exon 4 of 10) protein_coding-exon (ENSMUSG00000005370.4, exon 4 of 10) 11101 ENSMUSG00000005370.4 ENSMUSG00000005370 ENSMUST00000234756 Msh6 protein_coding Interval_124203 chr5 40430495 40430927 + 0 NA Intergenic Intergenic -24782 ENSMUSG00000089393.1 ENSMUSG00000089393 ENSMUST00000158768 Gm23022 snRNA Interval_162369 chr8 127495221 127495858 + 0 NA intron (ENSMUSG00000025812.18, intron 22 of 24) protein_coding-intron (ENSMUSG00000025812.18, intron 21 of 23) -65896 ENSMUSG00000090074.1 ENSMUSG00000090074 ENSMUST00000161478 Gm6921 processed_pseudogene Interval_32998 chr11 113588514 113589902 + 0 NA intron (ENSMUSG00000041654.15, intron 2 of 2) protein_coding-intron (ENSMUSG00000041654.15, intron 2 of 2) -23429 ENSMUSG00000041654.15 ENSMUSG00000041654 ENSMUST00000123153 Slc39a11 protein_coding Interval_172913 chrX 53341512 53342041 + 0 NA Intergenic Intergenic 27243 ENSMUSG00000081145.2 ENSMUSG00000081145 ENSMUST00000120713 Gm14585 processed_pseudogene Interval_80111 chr18 37689760 37690156 + 0 NA exon (ENSMUSG00000102748.1, exon 1 of 1) protein_coding-exon (ENSMUSG00000102748.1, exon 1 of 1) 130 ENSMUSG00000102748.1 ENSMUSG00000102748 ENSMUST00000193631 Pcdhgb2 protein_coding Interval_46875 chr13 72947029 72948643 + 0 NA Intergenic Intergenic -131073 ENSMUSG00000113082.1 ENSMUSG00000113082 ENSMUST00000223149 D730050B12Rik lincRNA Interval_151795 chr7 126718768 126719060 + 0 NA Intergenic Intergenic -5022 ENSMUSG00000108357.1 ENSMUSG00000108357 ENSMUST00000205464 Snrp1c-ps1 processed_pseudogene Interval_132837 chr5 148241718 148242201 + 0 NA intron (ENSMUSG00000029651.16, intron 7 of 14) protein_coding-intron (ENSMUSG00000029651.16, intron 7 of 14) 5967 ENSMUSG00000029651.16 ENSMUSG00000029651 ENSMUST00000085554 Mtus2 protein_coding Interval_41735 chr12 118521548 118522022 + 0 NA intron (ENSMUSG00000113875.1, intron 3 of 3) lincRNA-intron (ENSMUSG00000113875.1, intron 3 of 3) 8408 ENSMUSG00000113875.1 ENSMUSG00000113875 ENSMUST00000222459 D230030E09Rik lincRNA Interval_118438 chr4 131587540 131588122 + 0 NA Intergenic Intergenic 84310 ENSMUSG00000087171.1 ENSMUSG00000087171 ENSMUST00000138697 Gm12962 lincRNA Interval_54037 chr14 64656851 64657692 + 0 NA intron (ENSMUSG00000060012.9, intron 1 of 2) protein_coding-intron (ENSMUSG00000060012.9, intron 1 of 39) 4711 ENSMUSG00000060012.9 ENSMUSG00000060012 ENSMUST00000224677 Kif13b protein_coding Interval_16853 chr10 69271012 69271199 + 0 NA TTS (ENSMUSG00000019944.14) protein_coding-TTS (ENSMUSG00000019944.14) -41034 ENSMUSG00000112798.1 ENSMUSG00000112798 ENSMUST00000217861 Gm40685 lincRNA Interval_61509 chr15 82061696 82061890 + 0 NA intron (ENSMUSG00000075524.3, intron 1 of 1) protein_coding-intron (ENSMUSG00000075524.3, intron 1 of 1) 2642 ENSMUSG00000075524.3 ENSMUSG00000075524 ENSMUST00000100396 4930407I10Rik protein_coding Interval_93676 chr2 75772408 75772860 + 0 NA Intergenic Intergenic -4554 ENSMUSG00000086813.1 ENSMUSG00000086813 ENSMUST00000135682 Gm13657 processed_transcript Interval_82872 chr18 77623716 77624407 + 0 NA Intergenic Intergenic -58553 ENSMUSG00000077593.1 ENSMUSG00000077593 ENSMUST00000104405 Gm26014 snoRNA Interval_20088 chr10 114049684 114050371 + 0 NA Intergenic Intergenic -45700 ENSMUSG00000112921.1 ENSMUSG00000112921 ENSMUST00000218197 Gm48104 TEC Interval_26065 chr11 53871852 53872525 + 0 NA promoter-TSS (ENSMUSG00000018900.7) protein_coding-promoter-TSS (ENSMUSG00000018900.7) -511 ENSMUSG00000018900.7 ENSMUSG00000018900 ENSMUST00000136307 Slc22a5 protein_coding Interval_154782 chr8 23319771 23320281 + 0 NA Intergenic Intergenic -29862 ENSMUSG00000077399.1 ENSMUSG00000077399 ENSMUST00000104211 Gm24335 snoRNA Interval_37519 chr12 69530391 69531793 + 0 NA Intergenic Intergenic 30245 ENSMUSG00000095776.1 ENSMUSG00000095776 ENSMUST00000177928 Gm23018 miRNA Interval_171148 chr9 114772338 114772909 + 0 NA intron (ENSMUSG00000032436.17, intron 1 of 1) protein_coding-intron (ENSMUSG00000032436.17, intron 1 of 4) 2828 ENSMUSG00000032436.17 ENSMUSG00000032436 ENSMUST00000216760 Cmtm7 protein_coding Interval_19233 chr10 95659325 95661053 + 0 NA Intergenic Intergenic 13200 ENSMUSG00000074780.2 ENSMUSG00000074780 ENSMUST00000099328 Anapc15-ps protein_coding Interval_154742 chr8 23027755 23028783 + 0 NA intron (ENSMUSG00000031543.18, intron 1 of 43) protein_coding-intron (ENSMUSG00000031543.18, intron 1 of 42) -69828 ENSMUSG00000109793.1 ENSMUSG00000109793 ENSMUST00000210691 Gm10043 processed_pseudogene Interval_41 GL456212.1 51359 51612 + 0 NA NA NA NA NA Interval_130674 chr5 129653579 129654000 + 0 NA TTS (ENSMUSG00000051034.7) protein_coding-TTS (ENSMUSG00000051034.7) 16310 ENSMUSG00000051034.7 ENSMUSG00000051034 ENSMUST00000049778 Zfp11 protein_coding Interval_94978 chr2 102437561 102437886 + 0 NA Intergenic Intergenic 14776 ENSMUSG00000075012.4 ENSMUSG00000075012 ENSMUST00000099678 Fjx1 protein_coding Interval_47716 chr13 91687207 91687762 + 0 NA intron (ENSMUSG00000003992.15, intron 12 of 12) protein_coding-intron (ENSMUSG00000003992.15, intron 12 of 16) -35772 ENSMUSG00000077278.1 ENSMUSG00000077278 ENSMUST00000104090 Gm22778 snoRNA Interval_32735 chr11 110180127 110181141 + 0 NA exon (ENSMUSG00000044749.13, exon 35 of 39) protein_coding-exon (ENSMUSG00000044749.13, exon 35 of 39) -12579 ENSMUSG00000041797.7 ENSMUSG00000041797 ENSMUST00000126499 Abca9 protein_coding Interval_155555 chr8 34392363 34392953 + 0 NA Intergenic Intergenic -6830 ENSMUSG00000110178.1 ENSMUSG00000110178 ENSMUST00000211696 Gm33831 lincRNA Interval_102614 chr3 28409155 28410391 + 0 NA intron (ENSMUSG00000027692.16, intron 1 of 12) protein_coding-intron (ENSMUSG00000027692.16, intron 2 of 30) -10170 ENSMUSG00000092990.1 ENSMUSG00000092990 ENSMUST00000175249 Mir466q miRNA Interval_161749 chr8 122536719 122537839 + 0 NA intron (ENSMUSG00000014444.17, intron 1 of 50) protein_coding-intron (ENSMUSG00000014444.17, intron 1 of 50) 14050 ENSMUSG00000014444.17 ENSMUSG00000014444 ENSMUST00000148497 Piezo1 protein_coding Interval_117888 chr4 126887116 126887336 + 0 NA intron (ENSMUSG00000042446.16, intron 17 of 23) protein_coding-intron (ENSMUSG00000042446.16, intron 23 of 29) -26114 ENSMUSG00000088984.1 ENSMUSG00000088984 ENSMUST00000158359 Gm25604 snoRNA Interval_102165 chr3 19061387 19062689 + 0 NA Intergenic Intergenic 81861 ENSMUSG00000103135.1 ENSMUSG00000103135 ENSMUST00000193065 Gm37979 TEC Interval_152863 chr7 138892946 138893866 + 0 NA TTS (ENSMUSG00000078566.8) protein_coding-TTS (ENSMUSG00000078566.8) 2442 ENSMUSG00000109881.1 ENSMUSG00000109881 ENSMUST00000210611 Gm45507 antisense Interval_163500 chr9 21736864 21737482 + 0 NA exon (ENSMUSG00000032193.9, exon 1 of 1) protein_coding-exon (ENSMUSG00000032193.9, exon 1 of 1) 1066 ENSMUSG00000032193.9 ENSMUSG00000032193 ENSMUST00000214549 Ldlr protein_coding Interval_60132 chr15 66018000 66018387 + 0 NA intron (ENSMUSG00000056258.9, intron 8 of 14) protein_coding-intron (ENSMUSG00000056258.9, intron 8 of 14) -41389 ENSMUSG00000072511.3 ENSMUSG00000072511 ENSMUST00000100584 Hhla1 protein_coding Interval_123778 chr5 35444834 35445529 + 0 NA Intergenic Intergenic 49083 ENSMUSG00000106970.1 ENSMUSG00000106970 ENSMUST00000201640 Gm43377 TEC Interval_113332 chr4 53513354 53513688 + 0 NA intron (ENSMUSG00000028412.17, intron 3 of 15) protein_coding-intron (ENSMUSG00000028412.17, intron 3 of 15) 51176 ENSMUSG00000084970.1 ENSMUSG00000084970 ENSMUST00000138377 1700060J05Rik antisense Interval_140182 chr6 115049132 115049603 + 0 NA Intergenic Intergenic -11512 ENSMUSG00000030316.13 ENSMUSG00000030316 ENSMUST00000144445 Tamm41 protein_coding Interval_102822 chr3 31491833 31492233 + 0 NA Intergenic Intergenic 151021 ENSMUSG00000103998.1 ENSMUSG00000103998 ENSMUST00000193926 Gm38025 lincRNA Interval_38261 chr12 76768253 76768638 + 0 NA promoter-TSS (ENSMUSG00000090258.7) protein_coding-promoter-TSS (ENSMUSG00000090258.7) -43 ENSMUSG00000090258.7 ENSMUSG00000090258 ENSMUST00000152917 Churc1 protein_coding Interval_139027 chr6 94282205 94284745 + 0 NA promoter-TSS (ENSMUSG00000045095.16) protein_coding-promoter-TSS (ENSMUSG00000045095.16) 40559 ENSMUSG00000107545.1 ENSMUSG00000107545 ENSMUST00000204466 Gm44307 processed_pseudogene Interval_66192 chr16 32246347 32247469 + 0 NA promoter-TSS (ENSMUSG00000022787.10) protein_coding-promoter-TSS (ENSMUSG00000022787.10) 250 ENSMUSG00000035764.5 ENSMUSG00000035764 ENSMUST00000042732 Fbxo45 protein_coding Interval_8497 chr1 140180674 140181216 + 0 NA intron (ENSMUSG00000026365.15, intron 1 of 12) protein_coding-intron (ENSMUSG00000026365.15, intron 1 of 21) 2819 ENSMUSG00000026365.15 ENSMUSG00000026365 ENSMUST00000194688 Cfh protein_coding Interval_61469 chr15 81804440 81805196 + 0 NA intron (ENSMUSG00000022389.15, intron 1 of 1) protein_coding-intron (ENSMUSG00000022389.15, intron 1 of 3) -2205 ENSMUSG00000097613.1 ENSMUSG00000097613 ENSMUST00000181220 Gm17597 antisense Interval_50356 chr14 12025552 12025828 + 0 NA intron (ENSMUSG00000021745.14, intron 4 of 29) protein_coding-intron (ENSMUSG00000021745.14, intron 4 of 29) -44482 ENSMUSG00000085883.2 ENSMUSG00000085883 ENSMUST00000151564 Gm3848 antisense Interval_139779 chr6 108638310 108638809 + 0 NA intron (ENSMUSG00000087341.4, intron 1 of 6) antisense-intron (ENSMUSG00000087341.4, intron 1 of 6) -18486 ENSMUSG00000090576.2 ENSMUSG00000090576 ENSMUST00000204397 Gm17055 processed_transcript Interval_29391 chr11 83621406 83621632 + 0 NA promoter-TSS (ENSMUSG00000051832.7) processed_transcript-promoter-TSS (ENSMUSG00000051832.7) -143 ENSMUSG00000051832.7 ENSMUSG00000051832 ENSMUST00000171408 E230016K23Rik processed_transcript Interval_61945 chr15 85403392 85403632 + 0 NA intron (ENSMUSG00000016541.10, intron 9 of 11) protein_coding-intron (ENSMUSG00000016541.10, intron 9 of 11) -52258 ENSMUSG00000064764.1 ENSMUSG00000064764 ENSMUST00000082830 Gm23517 snRNA Interval_16132 chr10 60914361 60914962 + 0 NA Intergenic Intergenic -8362 ENSMUSG00000099279.1 ENSMUSG00000099279 ENSMUST00000183643 Mir6408 miRNA Interval_72343 chr17 29321894 29323076 + 0 NA promoter-TSS (ENSMUSG00000117592.1) antisense-promoter-TSS (ENSMUSG00000117592.1) -68 ENSMUSG00000117592.1 ENSMUSG00000117592 ENSMUST00000234239 Gm46603 antisense Interval_541 chr1 7105186 7106200 + 0 NA intron (ENSMUSG00000051285.17, intron 1 of 1) protein_coding-intron (ENSMUSG00000051285.17, intron 1 of 5) 30893 ENSMUSG00000098201.1 ENSMUSG00000098201 ENSMUST00000182051 Gm26983 processed_pseudogene Interval_64386 chr16 11033988 11034702 + 0 NA intron (ENSMUSG00000115992.1, intron 1 of 2) protein_coding-intron (ENSMUSG00000022500.15, intron 1 of 2) 2389 ENSMUSG00000115992.1 ENSMUSG00000115992 ENSMUST00000229764 Gm10832 lincRNA Interval_143888 chr7 16949894 16951788 + 0 NA Intergenic Intergenic 2660 ENSMUSG00000064689.1 ENSMUSG00000064689 ENSMUST00000082755 Gm25815 snRNA Interval_88042 chr19 58314550 58316057 + 0 NA intron (ENSMUSG00000025089.15, intron 3 of 8) protein_coding-intron (ENSMUSG00000025089.15, intron 5 of 10) 111164 ENSMUSG00000087002.1 ENSMUSG00000087002 ENSMUST00000143595 Gm16277 antisense Interval_142439 chr6 142324097 142325217 + 0 NA Intergenic Intergenic -21010 ENSMUSG00000041671.13 ENSMUSG00000041671 ENSMUST00000153912 Pyroxd1 protein_coding Interval_49535 chr13 112785643 112788071 + 0 NA Intergenic Intergenic -14006 ENSMUSG00000021759.14 ENSMUSG00000021759 ENSMUST00000070951 Plpp1 protein_coding Interval_71620 chr17 24903072 24903922 + 0 NA promoter-TSS (ENSMUSG00000024163.17) protein_coding-promoter-TSS (ENSMUSG00000024163.17) 6746 ENSMUSG00000073435.10 ENSMUSG00000073435 ENSMUST00000154321 Nme3 protein_coding Interval_152388 chr7 132683193 132683408 + 0 NA intron (ENSMUSG00000030946.13, intron 7 of 7) protein_coding-intron (ENSMUSG00000030946.13, intron 6 of 6) -23416 ENSMUSG00000087348.1 ENSMUSG00000087348 ENSMUST00000132849 Gm15582 antisense Interval_69530 chr16 94064099 94064592 + 0 NA Intergenic Intergenic 19521 ENSMUSG00000116569.1 ENSMUSG00000116569 ENSMUST00000231710 Gm49620 bidirectional_promoter_lncRNA Interval_68968 chr16 89801389 89802491 + 0 NA intron (ENSMUSG00000002489.16, intron 7 of 12) protein_coding-intron (ENSMUSG00000002489.16, intron 22 of 27) -6658 ENSMUSG00000002489.16 ENSMUSG00000002489 ENSMUST00000136760 Tiam1 protein_coding Interval_41351 chr12 113000045 113001306 + 0 NA promoter-TSS (ENSMUSG00000011158.8) protein_coding-promoter-TSS (ENSMUSG00000011158.8) 711 ENSMUSG00000097100.1 ENSMUSG00000097100 ENSMUST00000180971 9230104M06Rik antisense Interval_69544 chr16 94148236 94148837 + 0 NA intron (ENSMUSG00000040820.16, intron 2 of 6) protein_coding-intron (ENSMUSG00000040820.16, intron 5 of 9) 20875 ENSMUSG00000076304.1 ENSMUSG00000076304 ENSMUST00000102349 Gm23062 miRNA Interval_130178 chr5 124774332 124775495 + 0 NA intron (ENSMUSG00000038011.15, intron 29 of 77) protein_coding-intron (ENSMUSG00000038011.15, intron 30 of 78) -11640 ENSMUSG00000038011.15 ENSMUSG00000038011 ENSMUST00000196708 Dnah10 protein_coding Interval_152859 chr7 138863663 138864661 + 0 NA intron (ENSMUSG00000041769.13, intron 1 of 5) protein_coding-intron (ENSMUSG00000041769.13, intron 2 of 8) 3325 ENSMUSG00000041769.13 ENSMUSG00000041769 ENSMUST00000172764 Ppp2r2d protein_coding Interval_107417 chr3 107458239 107460631 + 0 NA exon (ENSMUSG00000027895.10, exon 1 of 4) protein_coding-exon (ENSMUSG00000027895.10, exon 1 of 4) 117 ENSMUSG00000027895.10 ENSMUSG00000027895 ENSMUST00000238670 Kcnc4 protein_coding Interval_51241 chr14 25486916 25487088 + 0 NA intron (ENSMUSG00000007817.15, intron 1 of 23) protein_coding-intron (ENSMUSG00000007817.15, intron 1 of 23) 6948 ENSMUSG00000114539.1 ENSMUSG00000114539 ENSMUST00000224666 Gm47921 sense_intronic Interval_81937 chr18 66023752 66025324 + 0 NA Intergenic Intergenic -12289 ENSMUSG00000117907.1 ENSMUSG00000117907 ENSMUST00000235539 Gm50142 lincRNA Interval_8698 chr1 149032720 149033375 + 0 NA Intergenic Intergenic -4537 ENSMUSG00000100917.1 ENSMUSG00000100917 ENSMUST00000185777 Gm18751 processed_pseudogene Interval_42227 chr13 10301925 10302458 + 0 NA intron (ENSMUSG00000046159.16, intron 1 of 2) protein_coding-intron (ENSMUSG00000046159.16, intron 1 of 4) 58656 ENSMUSG00000046159.16 ENSMUSG00000046159 ENSMUST00000190395 Chrm3 protein_coding Interval_93642 chr2 75527200 75527393 + 0 NA Intergenic Intergenic -62508 ENSMUSG00000086576.1 ENSMUSG00000086576 ENSMUST00000142828 Gm13660 lincRNA Interval_38196 chr12 76306457 76307234 + 0 NA promoter-TSS (ENSMUSG00000021048.7) protein_coding-promoter-TSS (ENSMUSG00000021048.7) 138 ENSMUSG00000112784.1 ENSMUSG00000112784 ENSMUST00000218341 Gm34868 antisense Interval_60011 chr15 63810965 63811503 + 0 NA Intergenic Intergenic -2475 ENSMUSG00000079025.9 ENSMUSG00000079025 ENSMUST00000173503 Gsdmc protein_coding Interval_35117 chr12 17407895 17408107 + 0 NA intron (ENSMUSG00000061458.9, intron 17 of 20) protein_coding-intron (ENSMUSG00000061458.9, intron 17 of 20) -28617 ENSMUSG00000113246.1 ENSMUSG00000113246 ENSMUST00000220527 Gm36752 lincRNA Interval_7105 chr1 125872395 125872716 + 0 NA TTS (ENSMUSG00000026344.9) protein_coding-TTS (ENSMUSG00000026344.9) 32552 ENSMUSG00000026343.6 ENSMUSG00000026343 ENSMUST00000159359 Gpr39 protein_coding Interval_157347 chr8 69755858 69756106 + 0 NA intron (ENSMUSG00000092544.8, intron 4 of 5) protein_coding-intron (ENSMUSG00000092544.8, intron 1 of 3) -6012 ENSMUSG00000092260.7 ENSMUSG00000092260 ENSMUST00000154063 Zfp963 protein_coding Interval_130267 chr5 125293211 125293471 + 0 NA intron (ENSMUSG00000037936.15, intron 7 of 10) protein_coding-intron (ENSMUSG00000037936.15, intron 7 of 12) -20526 ENSMUSG00000105039.1 ENSMUSG00000105039 ENSMUST00000198586 Gm32585 lincRNA Interval_30044 chr11 88862333 88862803 + 0 NA intron (ENSMUSG00000092399.1, intron 3 of 4) protein_coding-intron (ENSMUSG00000018428.15, intron 1 of 10) 10964 ENSMUSG00000092399.1 ENSMUSG00000092399 ENSMUST00000173677 4930556N13Rik antisense Interval_91287 chr2 37430502 37432020 + 0 NA promoter-TSS (ENSMUSG00000066798.3) protein_coding-promoter-TSS (ENSMUSG00000066798.3) 11874 ENSMUSG00000050714.9 ENSMUSG00000050714 ENSMUST00000203522 Zbtb26 protein_coding Interval_124205 chr5 40736080 40736536 + 0 NA Intergenic Intergenic -330379 ENSMUSG00000089393.1 ENSMUSG00000089393 ENSMUST00000158768 Gm23022 snRNA Interval_52114 chr14 36731230 36731485 + 0 NA Intergenic Intergenic -36068 ENSMUSG00000064777.1 ENSMUSG00000064777 ENSMUST00000082843 Gm25204 snRNA Interval_141048 chr6 124672048 124672709 + 0 NA intron (ENSMUSG00000004270.13, intron 1 of 2) protein_coding-intron (ENSMUSG00000004270.13, intron 1 of 12) -29879 ENSMUSG00000004270.13 ENSMUSG00000004270 ENSMUST00000150597 Lpcat3 protein_coding Interval_152977 chr7 140222071 140222260 + 0 NA exon (ENSMUSG00000025461.11, exon 3 of 14) protein_coding-exon (ENSMUSG00000025461.11, exon 3 of 14) 3898 ENSMUSG00000025461.11 ENSMUSG00000025461 ENSMUST00000209840 Cd163l1 protein_coding Interval_8787 chr1 151086346 151088356 + 0 NA Intergenic Intergenic 6901 ENSMUSG00000102628.1 ENSMUSG00000102628 ENSMUST00000193198 Gm37671 TEC Interval_87953 chr19 57358082 57358999 + 0 NA intron (ENSMUSG00000097785.2, intron 1 of 2) processed_transcript-intron (ENSMUSG00000097785.2, intron 1 of 2) 2199 ENSMUSG00000097785.2 ENSMUSG00000097785 ENSMUST00000181921 B230217O12Rik processed_transcript Interval_119117 chr4 135654889 135656540 + 0 NA Intergenic Intergenic 28896 ENSMUSG00000086788.2 ENSMUSG00000086788 ENSMUST00000148529 1700029M20Rik lincRNA Interval_161616 chr8 121590131 121591927 + 0 NA exon (ENSMUSG00000031812.16, exon 1 of 1) protein_coding-exon (ENSMUSG00000031812.16, exon 1 of 1) 545 ENSMUSG00000031812.16 ENSMUSG00000031812 ENSMUST00000181521 Map1lc3b protein_coding Interval_170437 chr9 107971391 107972482 + 0 NA TTS (ENSMUSG00000032586.9) protein_coding-TTS (ENSMUSG00000032586.9) -3670 ENSMUSG00000032596.14 ENSMUSG00000032596 ENSMUST00000176340 Uba7 protein_coding Interval_151205 chr7 119598827 119599051 + 0 NA exon (ENSMUSG00000030945.17, exon 14 of 14) protein_coding-exon (ENSMUSG00000030945.17, exon 14 of 14) 5841 ENSMUSG00000109478.1 ENSMUSG00000109478 ENSMUST00000207973 Gm39078 lincRNA Interval_4548 chr1 74948034 74952209 + 0 NA intron (ENSMUSG00000006538.12, intron 1 of 1) protein_coding-intron (ENSMUSG00000006538.12, intron 1 of 2) 1321 ENSMUSG00000006538.12 ENSMUSG00000006538 ENSMUST00000189364 Ihh protein_coding Interval_78260 chr18 10885684 10886498 + 0 NA Intergenic Intergenic 26411 ENSMUSG00000117593.1 ENSMUSG00000117593 ENSMUST00000235066 Gm18764 processed_pseudogene Interval_21758 chr11 4167883 4168252 + 0 NA intron (ENSMUSG00000002129.11, intron 4 of 4) protein_coding-intron (ENSMUSG00000002129.11, intron 4 of 15) -7849 ENSMUSG00000051427.14 ENSMUSG00000051427 ENSMUST00000132712 Ccdc157 protein_coding Interval_62235 chr15 89067571 89069824 + 0 NA promoter-TSS (ENSMUSG00000058441.7) protein_coding-promoter-TSS (ENSMUSG00000058441.7) 5600 ENSMUSG00000087331.8 ENSMUSG00000087331 ENSMUST00000150364 1810021B22Rik antisense Interval_44271 chr13 43234899 43235205 + 0 NA intron (ENSMUSG00000051335.6, intron 1 of 1) protein_coding-intron (ENSMUSG00000051335.6, intron 1 of 1) 68353 ENSMUSG00000051335.6 ENSMUSG00000051335 ENSMUST00000222779 Gfod1 protein_coding Interval_7343 chr1 129977413 129977983 + 0 NA intron (ENSMUSG00000042581.14, intron 3 of 9) protein_coding-intron (ENSMUSG00000042581.14, intron 15 of 15) 34536 ENSMUSG00000103281.1 ENSMUSG00000103281 ENSMUST00000191619 Gm37278 TEC Interval_109670 chr3 145892150 145892792 + 0 NA exon (ENSMUSG00000028194.15, exon 6 of 6) protein_coding-exon (ENSMUSG00000028194.15, exon 6 of 6) 13451 ENSMUSG00000105388.1 ENSMUSG00000105388 ENSMUST00000197973 Rpl36a-ps2 processed_pseudogene Interval_119539 chr4 138249648 138251076 + 0 NA promoter-TSS (ENSMUSG00000028758.12) protein_coding-promoter-TSS (ENSMUSG00000028758.12) -6373 ENSMUSG00000045349.15 ENSMUSG00000045349 ENSMUST00000154421 Sh2d5 protein_coding Interval_123981 chr5 36997577 36998460 + 0 NA Intergenic Intergenic -21062 ENSMUSG00000039474.13 ENSMUSG00000039474 ENSMUST00000167937 Wfs1 protein_coding Interval_32521 chr11 108101439 108101729 + 0 NA intron (ENSMUSG00000050965.14, intron 3 of 16) protein_coding-intron (ENSMUSG00000050965.14, intron 3 of 16) -80266 ENSMUSG00000084978.1 ENSMUSG00000084978 ENSMUST00000153899 Gm11655 antisense Interval_102905 chr3 32699958 32701027 + 0 NA Intergenic Intergenic -5806 ENSMUSG00000027671.14 ENSMUSG00000027671 ENSMUST00000153779 Actl6a protein_coding Interval_168016 chr9 75424738 75425254 + 0 NA Intergenic Intergenic 14812 ENSMUSG00000097021.7 ENSMUSG00000097021 ENSMUST00000180533 4933433G15Rik lincRNA Interval_113796 chr4 58669917 58672653 + 0 NA Intergenic Intergenic -12693 ENSMUSG00000086470.1 ENSMUSG00000086470 ENSMUST00000127456 Gm12580 lincRNA Interval_79369 chr18 31322026 31322223 + 0 NA Intergenic Intergenic 28080 ENSMUSG00000117502.1 ENSMUSG00000117502 ENSMUST00000234093 Gm7941 processed_pseudogene Interval_50587 chr14 16110232 16111391 + 0 NA Intergenic Intergenic -60586 ENSMUSG00000114484.1 ENSMUSG00000114484 ENSMUST00000225492 Gm8517 processed_pseudogene Interval_59516 chr15 54904542 54904932 + 0 NA intron (ENSMUSG00000022425.16, intron 4 of 7) protein_coding-intron (ENSMUSG00000022425.16, intron 4 of 24) -42051 ENSMUSG00000022425.16 ENSMUSG00000022425 ENSMUST00000226339 Enpp2 protein_coding Interval_89289 chr2 18872175 18873138 + 0 NA intron (ENSMUSG00000026737.12, intron 2 of 4) protein_coding-intron (ENSMUSG00000026737.12, intron 4 of 9) 33618 ENSMUSG00000026737.12 ENSMUSG00000026737 ENSMUST00000152981 Pip4k2a protein_coding Interval_23646 chr11 24060488 24061205 + 0 NA intron (ENSMUSG00000055010.1, intron 1 of 2) protein_coding-intron (ENSMUSG00000055010.1, intron 1 of 2) 14208 ENSMUSG00000055010.1 ENSMUSG00000055010 ENSMUST00000068360 A830031A19Rik protein_coding Interval_82627 chr18 75511135 75511851 + 0 NA intron (ENSMUSG00000052928.9, intron 9 of 11) protein_coding-intron (ENSMUSG00000052928.9, intron 9 of 11) -3152 ENSMUSG00000097712.1 ENSMUSG00000097712 ENSMUST00000181913 Gm10532 antisense Interval_20382 chr10 117208605 117210928 + 0 NA Intergenic Intergenic 7592 ENSMUSG00000020171.8 ENSMUSG00000020171 ENSMUST00000219609 Yeats4 protein_coding Interval_106284 chr3 95127043 95127288 + 0 NA promoter-TSS (ENSMUSG00000005628.12) protein_coding-promoter-TSS (ENSMUSG00000005628.12) -488 ENSMUSG00000005628.12 ENSMUSG00000005628 ENSMUST00000149898 Tmod4 protein_coding Interval_68482 chr16 77995710 77996031 + 0 NA Intergenic Intergenic 2856 ENSMUSG00000116886.1 ENSMUSG00000116886 ENSMUST00000232575 Gm49589 processed_pseudogene Interval_130790 chr5 130516155 130516537 + 0 NA intron (ENSMUSG00000060371.12, intron 2 of 2) protein_coding-intron (ENSMUSG00000060371.12, intron 3 of 6) 102205 ENSMUSG00000106849.1 ENSMUSG00000106849 ENSMUST00000201334 Gm43418 TEC Interval_120255 chr4 144960447 144961302 + 0 NA Intergenic Intergenic -2026 ENSMUSG00000103911.1 ENSMUSG00000103911 ENSMUST00000193467 Gm38074 TEC Interval_152130 chr7 129774233 129774841 + 0 NA Intergenic Intergenic -58509 ENSMUSG00000108576.1 ENSMUSG00000108576 ENSMUST00000206447 Gm44778 lincRNA Interval_6114 chr1 97512868 97513052 + 0 NA intron (ENSMUSG00000101348.6, intron 3 of 4) transcribed_unprocessed_pseudogene-intron (ENSMUSG00000101348.6, intron 3 of 4) 32488 ENSMUSG00000103179.1 ENSMUSG00000103179 ENSMUST00000192636 Gm37171 TEC Interval_49942 chr13 118596079 118597151 + 0 NA Intergenic Intergenic 2303 ENSMUSG00000114831.1 ENSMUSG00000114831 ENSMUST00000224199 Gm18361 processed_pseudogene Interval_164128 chr9 31719479 31719731 + 0 NA Intergenic Intergenic -41579 ENSMUSG00000110853.1 ENSMUSG00000110853 ENSMUST00000217207 Gm47436 lincRNA Interval_93397 chr2 72779468 72779913 + 0 NA intron (ENSMUSG00000085427.7, intron 4 of 5) lincRNA-intron (ENSMUSG00000085427.7, intron 4 of 5) 34027 ENSMUSG00000085427.7 ENSMUSG00000085427 ENSMUST00000125746 6430710C18Rik lincRNA Interval_43563 chr13 33561576 33563817 + 0 NA exon (ENSMUSG00000112963.1, exon 3 of 3) lincRNA-exon (ENSMUSG00000112963.1, exon 3 of 3) -5098 ENSMUSG00000089229.1 ENSMUSG00000089229 ENSMUST00000158604 Gm25043 ribozyme Interval_87144 chr19 46431418 46431791 + 0 NA intron (ENSMUSG00000025231.17, intron 2 of 5) protein_coding-intron (ENSMUSG00000025231.17, intron 3 of 11) 30480 ENSMUSG00000025231.17 ENSMUSG00000025231 ENSMUST00000144341 Sufu protein_coding Interval_161985 chr8 124265468 124265904 + 0 NA intron (ENSMUSG00000089704.9, intron 1 of 4) protein_coding-intron (ENSMUSG00000089704.9, intron 1 of 15) -29680 ENSMUSG00000089704.9 ENSMUSG00000089704 ENSMUST00000147911 Galnt2 protein_coding Interval_16855 chr10 69281953 69282576 + 0 NA intron (ENSMUSG00000019944.14, intron 8 of 10) protein_coding-intron (ENSMUSG00000019944.14, intron 8 of 10) -29875 ENSMUSG00000112798.1 ENSMUSG00000112798 ENSMUST00000217861 Gm40685 lincRNA Interval_170700 chr9 110170799 110171193 + 0 NA exon (ENSMUSG00000032481.17, exon 10 of 28) protein_coding-exon (ENSMUSG00000032481.17, exon 10 of 28) -49180 ENSMUSG00000105187.1 ENSMUSG00000105187 ENSMUST00000196828 Gm23377 snoRNA Interval_49664 chr13 113861070 113861847 + 0 NA intron (ENSMUSG00000042348.10, intron 1 of 3) protein_coding-intron (ENSMUSG00000042348.10, intron 1 of 4) 66865 ENSMUSG00000042348.10 ENSMUSG00000042348 ENSMUST00000224068 Arl15 protein_coding Interval_54867 chr14 75899361 75899872 + 0 NA intron (ENSMUSG00000067995.4, intron 7 of 7) protein_coding-intron (ENSMUSG00000067995.4, intron 7 of 7) 51711 ENSMUSG00000065147.1 ENSMUSG00000065147 ENSMUST00000083213 Snora31 snoRNA Interval_155049 chr8 25951916 25952129 + 0 NA exon (ENSMUSG00000037260.8, exon 14 of 18) protein_coding-exon (ENSMUSG00000037260.8, exon 14 of 18) 22031 ENSMUSG00000037260.8 ENSMUSG00000037260 ENSMUST00000209420 Hgsnat protein_coding Interval_72008 chr17 27562335 27563679 + 0 NA TTS (ENSMUSG00000062753.14) protein_coding-TTS (ENSMUSG00000062753.14) -2105 ENSMUSG00000116884.1 ENSMUSG00000116884 ENSMUST00000231648 C130040N14Rik antisense Interval_150006 chr7 104559939 104560106 + 0 NA promoter-TSS (ENSMUSG00000073927.6) protein_coding-promoter-TSS (ENSMUSG00000073927.6) -879 ENSMUSG00000073927.6 ENSMUSG00000073927 ENSMUST00000098175 Olfr652 protein_coding Interval_43374 chr13 29835366 29835643 + 0 NA intron (ENSMUSG00000006191.17, intron 4 of 5) protein_coding-intron (ENSMUSG00000006191.17, intron 4 of 15) -104779 ENSMUSG00000086893.1 ENSMUSG00000086893 ENSMUST00000144277 Gm11365 antisense Interval_117826 chr4 126452049 126452261 + 0 NA intron (ENSMUSG00000041530.17, intron 11 of 18) protein_coding-intron (ENSMUSG00000041530.17, intron 11 of 18) 16266 ENSMUSG00000041530.17 ENSMUSG00000041530 ENSMUST00000149425 Ago1 protein_coding Interval_31324 chr11 99937573 99938215 + 0 NA TTS (ENSMUSG00000051481.5) protein_coding-TTS (ENSMUSG00000051481.5) 1603 ENSMUSG00000051481.5 ENSMUSG00000051481 ENSMUST00000058761 Krtap31-2 protein_coding Interval_49729 chr13 114297105 114298430 + 0 NA intron (ENSMUSG00000021764.8, intron 3 of 3) protein_coding-intron (ENSMUSG00000021764.8, intron 4 of 4) -13386 ENSMUSG00000114707.1 ENSMUSG00000114707 ENSMUST00000224003 Gm47558 TEC Interval_33724 chr11 118093551 118094187 + 0 NA promoter-TSS (ENSMUSG00000033987.16) protein_coding-promoter-TSS (ENSMUSG00000033987.16) -4675 ENSMUSG00000033987.16 ENSMUSG00000033987 ENSMUST00000018719 Dnah17 protein_coding Interval_58843 chr15 38546116 38547569 + 0 NA Intergenic Intergenic -27154 ENSMUSG00000115587.1 ENSMUSG00000115587 ENSMUST00000226494 Gm29697 processed_pseudogene Interval_140062 chr6 113719672 113720765 + 0 NA promoter-TSS (ENSMUSG00000064177.8) protein_coding-promoter-TSS (ENSMUSG00000064177.8) 1634 ENSMUSG00000108154.1 ENSMUSG00000108154 ENSMUST00000203699 Gm44033 TEC Interval_31682 chr11 102229409 102230628 + 0 NA TTS (ENSMUSG00000098863.1) miRNA-TTS (ENSMUSG00000098863.1) 124 ENSMUSG00000008855.17 ENSMUSG00000008855 ENSMUST00000125072 Hdac5 protein_coding Interval_147710 chr7 72362360 72364344 + 0 NA Intergenic Intergenic -133992 ENSMUSG00000032776.9 ENSMUSG00000032776 ENSMUST00000206755 Mctp2 protein_coding Interval_55340 chr14 83884138 83884651 + 0 NA Intergenic Intergenic 55347 ENSMUSG00000115006.1 ENSMUSG00000115006 ENSMUST00000228928 Gm49054 lincRNA Interval_52787 chr14 50026220 50026787 + 0 NA Intergenic Intergenic 13872 ENSMUSG00000068437.4 ENSMUSG00000068437 ENSMUST00000089844 Olfr725 protein_coding Interval_72398 chr17 29602980 29603742 + 0 NA intron (ENSMUSG00000042203.8, intron 12 of 12) protein_coding-intron (ENSMUSG00000042203.8, intron 12 of 12) -7056 ENSMUSG00000089900.2 ENSMUSG00000089900 ENSMUST00000159875 Tbc1d22bos antisense Interval_20636 chr10 119814036 119814529 + 0 NA intron (ENSMUSG00000034813.18, intron 1 of 3) protein_coding-intron (ENSMUSG00000034813.18, intron 1 of 22) 37995 ENSMUSG00000085418.1 ENSMUSG00000085418 ENSMUST00000135940 Grip1os1 antisense Interval_57155 chr15 7056260 7057215 + 0 NA Intergenic Intergenic -33877 ENSMUSG00000054263.12 ENSMUSG00000054263 ENSMUST00000171588 Lifr protein_coding Interval_30972 chr11 97521549 97524221 + 0 NA promoter-TSS (ENSMUSG00000087042.1) sense_intronic-promoter-TSS (ENSMUSG00000087042.1) -990 ENSMUSG00000087042.1 ENSMUSG00000087042 ENSMUST00000134289 Gm11611 sense_intronic Interval_12382 chr1 192800643 192801023 + 0 NA Intergenic Intergenic 20294 ENSMUSG00000103874.1 ENSMUSG00000103874 ENSMUST00000195130 Gm38360 processed_pseudogene Interval_93273 chr2 71622932 71623516 + 0 NA Intergenic Intergenic -77274 ENSMUSG00000023391.8 ENSMUSG00000023391 ENSMUST00000134249 Dlx2 protein_coding Interval_107341 chr3 105989276 105990636 + 0 NA Intergenic Intergenic 11541 ENSMUSG00000010136.14 ENSMUSG00000010136 ENSMUST00000066319 Pifo protein_coding Interval_144905 chr7 28862981 28863354 + 0 NA promoter-TSS (ENSMUSG00000053522.11) protein_coding-promoter-TSS (ENSMUSG00000053522.11) -686 ENSMUSG00000053522.11 ENSMUSG00000053522 ENSMUST00000128001 Lgals7 protein_coding Interval_106660 chr3 98226900 98227663 + 0 NA intron (ENSMUSG00000027876.4, intron 2 of 5) protein_coding-intron (ENSMUSG00000027876.4, intron 2 of 5) 5125 ENSMUSG00000027876.4 ENSMUSG00000027876 ENSMUST00000029469 Reg4 protein_coding Interval_37170 chr12 59155397 59155728 + 0 NA intron (ENSMUSG00000021000.17, intron 15 of 29) protein_coding-intron (ENSMUSG00000021000.17, intron 10 of 24) 21490 ENSMUSG00000077505.1 ENSMUSG00000077505 ENSMUST00000104317 Gm24233 snoRNA Interval_88927 chr2 13040012 13040764 + 0 NA TTS (ENSMUSG00000103143.1) TEC-TTS (ENSMUSG00000103143.1) 4262 ENSMUSG00000103143.1 ENSMUSG00000103143 ENSMUST00000193263 Gm37742 TEC Interval_29755 chr11 86590483 86590820 + 0 NA intron (ENSMUSG00000018171.9, intron 1 of 2) protein_coding-intron (ENSMUSG00000018171.9, intron 10 of 11) -6493 ENSMUSG00000065455.1 ENSMUSG00000065455 ENSMUST00000083521 Mir21a miRNA Interval_33638 chr11 117678966 117679282 + 0 NA intron (ENSMUSG00000025571.13, intron 1 of 21) protein_coding-intron (ENSMUSG00000025571.13, intron 1 of 21) 67877 ENSMUSG00000054418.6 ENSMUSG00000054418 ENSMUST00000155384 2900041M22Rik processed_transcript Interval_136956 chr6 65070721 65071663 + 0 NA intron (ENSMUSG00000029920.9, intron 4 of 21) protein_coding-intron (ENSMUSG00000029920.9, intron 6 of 23) 28525 ENSMUSG00000029920.9 ENSMUSG00000029920 ENSMUST00000203104 Smarcad1 protein_coding Interval_129773 chr5 122249242 122249882 + 0 NA intron (ENSMUSG00000038593.18, intron 2 of 5) protein_coding-intron (ENSMUSG00000038593.18, intron 7 of 13) -3440 ENSMUSG00000082645.3 ENSMUSG00000082645 ENSMUST00000120264 Gm15481 processed_pseudogene Interval_123291 chr5 31160224 31160959 + 0 NA intron (ENSMUSG00000106864.3, intron 14 of 20) protein_coding-intron (ENSMUSG00000106864.3, intron 12 of 18) -2438 ENSMUSG00000101678.3 ENSMUSG00000101678 ENSMUST00000101411 Gm29609 protein_coding Interval_82629 chr18 75519346 75520094 + 0 NA exon (ENSMUSG00000097712.1, exon 3 of 4) antisense-exon (ENSMUSG00000097712.1, exon 3 of 4) 5075 ENSMUSG00000097712.1 ENSMUSG00000097712 ENSMUST00000181913 Gm10532 antisense Interval_135952 chr6 49057270 49057895 + 0 NA exon (ENSMUSG00000029816.10, exon 11 of 11) protein_coding-exon (ENSMUSG00000029816.10, exon 11 of 11) -14048 ENSMUSG00000107758.1 ENSMUSG00000107758 ENSMUST00000204279 Gm19253 processed_pseudogene Interval_15386 chr10 45302384 45302858 + 0 NA intron (ENSMUSG00000019848.14, intron 1 of 3) protein_coding-intron (ENSMUSG00000019848.14, intron 1 of 3) -4350 ENSMUSG00000111526.1 ENSMUSG00000111526 ENSMUST00000213575 Gm47433 processed_pseudogene Interval_154106 chr8 12745193 12746262 + 0 NA Intergenic Intergenic -26600 ENSMUSG00000074469.6 ENSMUSG00000074469 ENSMUST00000151188 Gm15348 lincRNA Interval_160326 chr8 108406678 108407460 + 0 NA intron (ENSMUSG00000038872.10, intron 3 of 15) protein_coding-intron (ENSMUSG00000038872.10, intron 3 of 15) 130152 ENSMUSG00000109868.1 ENSMUSG00000109868 ENSMUST00000211262 Gm39244 lincRNA Interval_103823 chr3 53421775 53423367 + 0 NA Intergenic Intergenic -20374 ENSMUSG00000105397.1 ENSMUSG00000105397 ENSMUST00000197550 Gm43471 processed_pseudogene Interval_73458 chr17 37472236 37472583 + 0 NA TTS (ENSMUSG00000029184.5) protein_coding-TTS (ENSMUSG00000029184.5) 11143 ENSMUSG00000016283.13 ENSMUSG00000016283 ENSMUST00000171139 H2-M2 protein_coding Interval_134220 chr6 23160302 23160644 + 0 NA promoter-TSS (ENSMUSG00000106989.1) processed_pseudogene-promoter-TSS (ENSMUSG00000106989.1) -412 ENSMUSG00000106989.1 ENSMUSG00000106989 ENSMUST00000096092 Gm5989 processed_pseudogene Interval_121486 chr4 156109010 156110368 + 0 NA promoter-TSS (ENSMUSG00000059939.13) protein_coding-promoter-TSS (ENSMUSG00000059939.13) -309 ENSMUSG00000059939.13 ENSMUSG00000059939 ENSMUST00000141882 9430015G10Rik protein_coding Interval_2266 chr1 37540414 37541531 + 0 NA promoter-TSS (ENSMUSG00000026110.15) protein_coding-promoter-TSS (ENSMUSG00000026110.15) -4721 ENSMUSG00000026110.15 ENSMUSG00000026110 ENSMUST00000195598 Mgat4a protein_coding Interval_51383 chr14 27122779 27123216 + 0 NA intron (ENSMUSG00000021895.10, intron 1 of 13) protein_coding-intron (ENSMUSG00000021895.10, intron 1 of 13) 8098 ENSMUSG00000021895.10 ENSMUSG00000021895 ENSMUST00000225494 Arhgef3 protein_coding Interval_39708 chr12 94190662 94191160 + 0 NA Intergenic Intergenic -131210 ENSMUSG00000113215.1 ENSMUSG00000113215 ENSMUST00000222410 Gm18749 processed_pseudogene Interval_32685 chr11 109626861 109628412 + 0 NA intron (ENSMUSG00000086733.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000086733.1, intron 1 of 1) 11316 ENSMUSG00000086733.1 ENSMUSG00000086733 ENSMUST00000141559 Gm11685 lincRNA Interval_174525 chrX 156303378 156304417 + 0 NA intron (ENSMUSG00000055109.5, intron 5 of 6) protein_coding-intron (ENSMUSG00000055109.5, intron 5 of 6) 152198 ENSMUSG00000064477.1 ENSMUSG00000064477 ENSMUST00000082543 Gm23404 snoRNA Interval_135421 chr6 39276422 39277729 + 0 NA Intergenic Intergenic -11133 ENSMUSG00000089422.1 ENSMUSG00000089422 ENSMUST00000158797 Gm26008 snRNA Interval_1734 chr1 33244066 33244942 + 0 NA Intergenic Intergenic 8565 ENSMUSG00000101754.2 ENSMUSG00000101754 ENSMUST00000187673 Gm2987 processed_pseudogene Interval_51514 chr14 29320581 29320991 + 0 NA intron (ENSMUSG00000021991.9, intron 1 of 4) protein_coding-intron (ENSMUSG00000021991.9, intron 9 of 37) 12949 ENSMUSG00000021991.9 ENSMUSG00000021991 ENSMUST00000224128 Cacna2d3 protein_coding Interval_170323 chr9 107027195 107027899 + 0 NA intron (ENSMUSG00000039716.12, intron 10 of 52) protein_coding-intron (ENSMUSG00000039716.12, intron 10 of 52) -20256 ENSMUSG00000075469.3 ENSMUSG00000075469 ENSMUST00000168370 Gm17205 processed_pseudogene Interval_95540 chr2 112025776 112027173 + 0 NA Intergenic Intergenic -2077 ENSMUSG00000109403.2 ENSMUSG00000109403 ENSMUST00000208536 Olfr1311 protein_coding Interval_145645 chr7 36690021 36691073 + 0 NA Intergenic Intergenic -4891 ENSMUSG00000104330.1 ENSMUSG00000104330 ENSMUST00000192928 Gm38285 TEC Interval_159109 chr8 90740700 90741812 + 0 NA promoter-TSS (ENSMUSG00000109870.1) lincRNA-promoter-TSS (ENSMUSG00000109870.1) -2626 ENSMUSG00000109870.1 ENSMUSG00000109870 ENSMUST00000211705 Gm35850 lincRNA Interval_51387 chr14 27151514 27152131 + 0 NA intron (ENSMUSG00000021895.10, intron 2 of 13) protein_coding-intron (ENSMUSG00000021895.10, intron 2 of 13) 36923 ENSMUSG00000021895.10 ENSMUSG00000021895 ENSMUST00000225494 Arhgef3 protein_coding Interval_9725 chr1 161289618 161289980 + 0 NA Intergenic Intergenic 9215 ENSMUSG00000104163.1 ENSMUSG00000104163 ENSMUST00000194329 Gm19057 processed_pseudogene Interval_27193 chr11 63977594 63978425 + 0 NA intron (ENSMUSG00000042148.8, intron 5 of 6) protein_coding-intron (ENSMUSG00000042148.8, intron 5 of 6) 13783 ENSMUSG00000086359.1 ENSMUSG00000086359 ENSMUST00000146915 9630013K17Rik antisense Interval_62852 chr15 97421190 97422152 + 0 NA Intergenic Intergenic 60469 ENSMUSG00000044250.8 ENSMUSG00000044250 ENSMUST00000226495 Pced1b protein_coding Interval_90271 chr2 29461697 29462177 + 0 NA intron (ENSMUSG00000026799.15, intron 3 of 4) protein_coding-intron (ENSMUSG00000026799.15, intron 3 of 7) 2743 ENSMUSG00000089597.1 ENSMUSG00000089597 ENSMUST00000158972 Gm24976 rRNA Interval_146734 chr7 49807978 49808442 + 0 NA intron (ENSMUSG00000030505.17, intron 10 of 11) protein_coding-intron (ENSMUSG00000030505.17, intron 10 of 15) -5992 ENSMUSG00000109154.1 ENSMUSG00000109154 ENSMUST00000208559 Gm44822 TEC Interval_134904 chr6 33391887 33392236 + 0 NA intron (ENSMUSG00000029763.17, intron 2 of 4) protein_coding-intron (ENSMUSG00000029763.17, intron 7 of 17) -14615 ENSMUSG00000083728.1 ENSMUSG00000083728 ENSMUST00000121183 Gm13854 processed_pseudogene Interval_76019 chr17 74413496 74413781 + 0 NA TTS (ENSMUSG00000024069.14) protein_coding-TTS (ENSMUSG00000024069.14) 17993 ENSMUSG00000024069.14 ENSMUSG00000024069 ENSMUST00000233180 Slc30a6 protein_coding Interval_39217 chr12 85943574 85944069 + 0 NA intron (ENSMUSG00000012609.19, intron 3 of 6) protein_coding-intron (ENSMUSG00000012609.19, intron 28 of 33) -18180 ENSMUSG00000012609.19 ENSMUSG00000012609 ENSMUST00000220906 Ttll5 protein_coding Interval_152016 chr7 128284420 128284653 + 0 NA intron (ENSMUSG00000030780.15, intron 6 of 11) protein_coding-intron (ENSMUSG00000030780.15, intron 6 of 12) 3899 ENSMUSG00000093215.1 ENSMUSG00000093215 ENSMUST00000175474 Mir3103 miRNA Interval_82839 chr18 77360614 77361145 + 0 NA intron (ENSMUSG00000032818.16, intron 14 of 39) protein_coding-intron (ENSMUSG00000032818.16, intron 11 of 20) -62201 ENSMUSG00000118108.1 ENSMUSG00000118108 ENSMUST00000238018 Gm50284 antisense Interval_33367 chr11 116146415 116146637 + 0 NA exon (ENSMUSG00000020776.18, exon 25 of 30) protein_coding-exon (ENSMUSG00000020776.18, exon 25 of 30) 10964 ENSMUSG00000020776.18 ENSMUSG00000020776 ENSMUST00000136073 Fbf1 protein_coding Interval_155076 chr8 26184361 26184692 + 0 NA Intergenic Intergenic 25733 ENSMUSG00000037214.12 ENSMUSG00000037214 ENSMUST00000209926 Thap1 protein_coding Interval_37884 chr12 72786251 72786610 + 0 NA promoter-TSS (ENSMUSG00000021096.11) protein_coding-promoter-TSS (ENSMUSG00000021096.11) 25115 ENSMUSG00000021096.11 ENSMUSG00000021096 ENSMUST00000222920 Ppm1a protein_coding Interval_3566 chr1 59626904 59627572 + 0 NA TTS (ENSMUSG00000089276.1) misc_RNA-TTS (ENSMUSG00000089276.1) 658 ENSMUSG00000089276.1 ENSMUSG00000089276 ENSMUST00000158651 Gm24545 misc_RNA Interval_126416 chr5 88294414 88295541 + 0 NA Intergenic Intergenic -22335 ENSMUSG00000064156.8 ENSMUSG00000064156 ENSMUST00000170832 Prol1 protein_coding Interval_34559 chr12 5119501 5120641 + 0 NA intron (ENSMUSG00000020627.10, intron 4 of 11) protein_coding-intron (ENSMUSG00000020627.10, intron 5 of 13) -52623 ENSMUSG00000112723.1 ENSMUSG00000112723 ENSMUST00000219035 Gm9110 processed_pseudogene Interval_8917 chr1 152118921 152119179 + 0 NA Intergenic Intergenic -9535 ENSMUSG00000102090.1 ENSMUSG00000102090 ENSMUST00000165944 Gm8964 processed_pseudogene Interval_43554 chr13 33096792 33097186 + 0 NA Intergenic Intergenic 18414 ENSMUSG00000051029.8 ENSMUSG00000051029 ENSMUST00000016951 Serpinb1b protein_coding Interval_85212 chr19 23857869 23858068 + 0 NA intron (ENSMUSG00000024897.9, intron 1 of 12) protein_coding-intron (ENSMUSG00000024897.9, intron 1 of 12) -46489 ENSMUSG00000024897.9 ENSMUSG00000024897 ENSMUST00000237688 Apba1 protein_coding Interval_145109 chr7 30077753 30078569 + 0 NA exon (ENSMUSG00000078768.2, exon 4 of 4) protein_coding-exon (ENSMUSG00000078768.2, exon 4 of 4) -5342 ENSMUSG00000098022.7 ENSMUSG00000098022 ENSMUST00000183190 Zfp82 protein_coding Interval_102978 chr3 33960186 33960673 + 0 NA Intergenic Intergenic -1229 ENSMUSG00000077559.1 ENSMUSG00000077559 ENSMUST00000104371 Gm23175 snoRNA Interval_159741 chr8 100023773 100023981 + 0 NA Intergenic Intergenic -6681 ENSMUSG00000071041.4 ENSMUSG00000071041 ENSMUST00000120826 Impdh2-ps processed_pseudogene Interval_7786 chr1 133669849 133672030 + 0 NA Intergenic Intergenic -9559 ENSMUSG00000116275.1 ENSMUSG00000116275 ENSMUST00000027736 Zc3h11a protein_coding Interval_166938 chr9 64020360 64020898 + 0 NA exon (ENSMUSG00000036867.7, exon 1 of 4) protein_coding-exon (ENSMUSG00000036867.7, exon 1 of 4) 1403 ENSMUSG00000036867.7 ENSMUSG00000036867 ENSMUST00000179458 Smad6 protein_coding Interval_16428 chr10 62840533 62840893 + 0 NA intron (ENSMUSG00000047146.17, intron 3 of 12) protein_coding-intron (ENSMUSG00000047146.17, intron 2 of 10) 19281 ENSMUSG00000112309.1 ENSMUSG00000112309 ENSMUST00000220243 Gm48353 TEC Interval_36361 chr12 41991346 41991803 + 0 NA intron (ENSMUSG00000113370.1, intron 2 of 6) lincRNA-intron (ENSMUSG00000113370.1, intron 2 of 6) 25182 ENSMUSG00000113370.1 ENSMUSG00000113370 ENSMUST00000222917 Gm46348 lincRNA Interval_46303 chr13 63555961 63557154 + 0 NA intron (ENSMUSG00000021466.12, intron 2 of 6) protein_coding-intron (ENSMUSG00000021466.12, intron 2 of 22) 11497 ENSMUSG00000102282.1 ENSMUSG00000102282 ENSMUST00000195845 A930032L01Rik TEC Interval_173414 chrX 91858610 91858909 + 0 NA TTS (ENSMUSG00000082807.1) processed_pseudogene-TTS (ENSMUSG00000082807.1) 933 ENSMUSG00000082807.1 ENSMUSG00000082807 ENSMUST00000120151 Gm14782 processed_pseudogene Interval_115486 chr4 99328540 99328743 + 0 NA Intergenic Intergenic 32741 ENSMUSG00000070891.2 ENSMUSG00000070891 ENSMUST00000094955 Gm12689 protein_coding Interval_62173 chr15 88554958 88556123 + 0 NA Intergenic Intergenic -44762 ENSMUSG00000054117.8 ENSMUSG00000054117 ENSMUST00000066949 Zdhhc25 protein_coding Interval_45201 chr13 53163739 53164038 + 0 NA intron (ENSMUSG00000021464.14, intron 1 of 8) protein_coding-intron (ENSMUSG00000021464.14, intron 1 of 8) 111770 ENSMUSG00000021464.14 ENSMUSG00000021464 ENSMUST00000149299 Ror2 protein_coding Interval_169121 chr9 92890826 92891103 + 0 NA Intergenic Intergenic -4868 ENSMUSG00000099823.1 ENSMUSG00000099823 ENSMUST00000187280 Gm28054 lincRNA Interval_48555 chr13 100142347 100142710 + 0 NA Intergenic Intergenic 11977 ENSMUSG00000113292.1 ENSMUSG00000113292 ENSMUST00000221573 Gm18413 processed_pseudogene Interval_150536 chr7 112138621 112139908 + 0 NA intron (ENSMUSG00000030772.6, intron 4 of 7) protein_coding-intron (ENSMUSG00000030772.6, intron 4 of 7) 19793 ENSMUSG00000030772.6 ENSMUSG00000030772 ENSMUST00000033036 Dkk3 protein_coding Interval_138127 chr6 85357130 85357470 + 0 NA intron (ENSMUSG00000051343.11, intron 1 of 5) protein_coding-intron (ENSMUSG00000051343.11, intron 1 of 4) -15663 ENSMUSG00000051343.11 ENSMUSG00000051343 ENSMUST00000204504 Rab11fip5 protein_coding Interval_64630 chr16 13760863 13761121 + 0 NA Intergenic Intergenic 6426 ENSMUSG00000118559.2 ENSMUSG00000118559 ENSMUST00000239037 A930007A09Rik protein_coding Interval_24126 chr11 30596793 30597520 + 0 NA intron (ENSMUSG00000060923.5, intron 3 of 3) protein_coding-intron (ENSMUSG00000060923.5, intron 3 of 3) -22702 ENSMUSG00000081887.1 ENSMUSG00000081887 ENSMUST00000121523 Gm12097 processed_pseudogene Interval_49505 chr13 112499292 112499821 + 0 NA intron (ENSMUSG00000021756.12, intron 11 of 13) protein_coding-intron (ENSMUSG00000021756.12, intron 12 of 14) 24510 ENSMUSG00000021756.12 ENSMUSG00000021756 ENSMUST00000184949 Il6st protein_coding Interval_47200 chr13 77919103 77919367 + 0 NA intron (ENSMUSG00000064138.14, intron 5 of 5) protein_coding-intron (ENSMUSG00000064138.14, intron 6 of 9) -105667 ENSMUSG00000093668.3 ENSMUSG00000093668 ENSMUST00000175955 Pou5f2 protein_coding Interval_44267 chr13 43208680 43209927 + 0 NA intron (ENSMUSG00000051335.6, intron 1 of 1) protein_coding-intron (ENSMUSG00000051335.6, intron 1 of 1) -49751 ENSMUSG00000021368.15 ENSMUSG00000021368 ENSMUST00000221095 Tbc1d7 protein_coding Interval_161645 chr8 121783824 121784124 + 0 NA intron (ENSMUSG00000025318.13, intron 3 of 4) protein_coding-intron (ENSMUSG00000025318.13, intron 3 of 4) -22441 ENSMUSG00000092418.1 ENSMUSG00000092418 ENSMUST00000173993 Gm20406 antisense Interval_171693 chr9 120187013 120187248 + 0 NA intron (ENSMUSG00000111219.1, intron 1 of 2) processed_transcript-intron (ENSMUSG00000111219.1, intron 1 of 2) 4566 ENSMUSG00000104494.1 ENSMUSG00000104494 ENSMUST00000193250 Gm37111 TEC Interval_73268 chr17 35879387 35880381 + 0 NA promoter-TSS (ENSMUSG00000024422.14) protein_coding-promoter-TSS (ENSMUSG00000024422.14) -8052 ENSMUSG00000024422.14 ENSMUSG00000024422 ENSMUST00000174308 Dhx16 protein_coding Interval_61003 chr15 78671532 78674379 + 0 NA exon (ENSMUSG00000043460.7, exon 2 of 2) protein_coding-exon (ENSMUSG00000043460.7, exon 2 of 2) 2170 ENSMUSG00000116260.1 ENSMUSG00000116260 ENSMUST00000230183 1700041B01Rik antisense Interval_156399 chr8 47914853 47915963 + 0 NA intron (ENSMUSG00000031563.8, intron 2 of 22) protein_coding-intron (ENSMUSG00000031563.8, intron 2 of 22) 16226 ENSMUSG00000064519.1 ENSMUSG00000064519 ENSMUST00000082585 n-R5s97 rRNA Interval_67705 chr16 56096919 56097303 + 0 NA promoter-TSS (ENSMUSG00000116999.1) processed_pseudogene-promoter-TSS (ENSMUSG00000116999.1) -272 ENSMUSG00000116999.1 ENSMUSG00000116999 ENSMUST00000232486 Gm18723 processed_pseudogene Interval_134242 chr6 23462714 23463256 + 0 NA intron (ENSMUSG00000017978.18, intron 9 of 29) protein_coding-intron (ENSMUSG00000017978.18, intron 8 of 29) -56761 ENSMUSG00000098877.1 ENSMUSG00000098877 ENSMUST00000185172 Gm27959 rRNA Interval_93915 chr2 79241241 79242485 + 0 NA Intergenic Intergenic -13563 ENSMUSG00000027009.18 ENSMUSG00000027009 ENSMUST00000126312 Itga4 protein_coding Interval_93351 chr2 72235044 72236109 + 0 NA intron (ENSMUSG00000049044.16, intron 16 of 21) protein_coding-intron (ENSMUSG00000049044.16, intron 22 of 27) -3274 ENSMUSG00000085001.1 ENSMUSG00000085001 ENSMUST00000128165 Rapgef4os2 antisense Interval_26664 chr11 59548000 59548898 + 0 NA TTS (ENSMUSG00000032691.14) protein_coding-TTS (ENSMUSG00000032691.14) 5693 ENSMUSG00000032691.14 ENSMUSG00000032691 ENSMUST00000149126 Nlrp3 protein_coding Interval_92256 chr2 57372530 57372701 + 0 NA Intergenic Intergenic 53094 ENSMUSG00000084338.5 ENSMUSG00000084338 ENSMUST00000121893 Gm13531 processed_pseudogene Interval_110335 chr3 157034846 157035071 + 0 NA intron (ENSMUSG00000040037.13, intron 3 of 6) protein_coding-intron (ENSMUSG00000040037.13, intron 3 of 6) 34541 ENSMUSG00000106018.1 ENSMUSG00000106018 ENSMUST00000198749 Gm43527 TEC Interval_68389 chr16 75516350 75516550 + 0 NA Intergenic Intergenic 51232 ENSMUSG00000032948.10 ENSMUSG00000032948 ENSMUST00000186809 Lipi protein_coding Interval_128942 chr5 116221613 116222412 + 0 NA intron (ENSMUSG00000043913.14, intron 2 of 5) protein_coding-intron (ENSMUSG00000043913.14, intron 2 of 13) -21694 ENSMUSG00000086122.1 ENSMUSG00000086122 ENSMUST00000156169 Gm14507 antisense Interval_169772 chr9 101134176 101134526 + 0 NA intron (ENSMUSG00000043154.15, intron 9 of 11) protein_coding-intron (ENSMUSG00000043154.15, intron 9 of 12) -15961 ENSMUSG00000104061.1 ENSMUSG00000104061 ENSMUST00000195293 Gm37953 TEC Interval_172606 chrX 38249566 38250932 + 0 NA intron (ENSMUSG00000036502.14, intron 1 of 7) protein_coding-intron (ENSMUSG00000036502.14, intron 1 of 9) 2190 ENSMUSG00000036502.14 ENSMUSG00000036502 ENSMUST00000139358 Tmem255a protein_coding Interval_126299 chr5 86262536 86262892 + 0 NA intron (ENSMUSG00000061184.8, intron 3 of 8) protein_coding-intron (ENSMUSG00000061184.8, intron 3 of 9) -25753 ENSMUSG00000094833.1 ENSMUSG00000094833 ENSMUST00000180191 Gm25473 snRNA Interval_1163 chr1 16453058 16453304 + 0 NA intron (ENSMUSG00000025920.19, intron 2 of 3) protein_coding-intron (ENSMUSG00000025920.19, intron 3 of 12) 66125 ENSMUSG00000025920.19 ENSMUSG00000025920 ENSMUST00000144138 Stau2 protein_coding Interval_7663 chr1 132908566 132909061 + 0 NA intron (ENSMUSG00000026443.3, intron 1 of 1) protein_coding-intron (ENSMUSG00000026443.3, intron 1 of 1) 14931 ENSMUSG00000106377.1 ENSMUSG00000106377 ENSMUST00000196792 Gm44300 miRNA Interval_68313 chr16 73000165 73001926 + 0 NA intron (ENSMUSG00000022883.11, intron 6 of 6) protein_coding-intron (ENSMUSG00000022883.11, intron 19 of 28) 24696 ENSMUSG00000022883.11 ENSMUSG00000022883 ENSMUST00000232432 Robo1 protein_coding Interval_64515 chr16 12960290 12961917 + 0 NA Intergenic Intergenic -9640 ENSMUSG00000116170.1 ENSMUSG00000116170 ENSMUST00000230534 Gm6332 processed_pseudogene Interval_81158 chr18 55133724 55134285 + 0 NA Intergenic Intergenic -9570 ENSMUSG00000104521.1 ENSMUSG00000104521 ENSMUST00000195736 Gm34073 TEC Interval_135493 chr6 39628296 39628695 + 0 NA intron (ENSMUSG00000002413.15, intron 14 of 17) protein_coding-intron (ENSMUSG00000002413.15, intron 17 of 21) 25470 ENSMUSG00000091313.1 ENSMUSG00000091313 ENSMUST00000168364 Fth-ps2 processed_pseudogene Interval_153313 chr7 143548426 143549768 + 0 NA promoter-TSS (ENSMUSG00000059119.9) protein_coding-promoter-TSS (ENSMUSG00000059119.9) -269 ENSMUSG00000059119.9 ENSMUSG00000059119 ENSMUST00000207870 Nap1l4 protein_coding Interval_140355 chr6 117087006 117087402 + 0 NA Intergenic Intergenic -57121 ENSMUSG00000107903.1 ENSMUSG00000107903 ENSMUST00000203868 Gm43930 TEC Interval_169272 chr9 96028054 96029313 + 0 NA promoter-TSS (ENSMUSG00000103507.1) TEC-promoter-TSS (ENSMUSG00000103507.1) 59 ENSMUSG00000103507.1 ENSMUSG00000103507 ENSMUST00000194610 Gm38375 TEC Interval_122747 chr5 25080771 25081182 + 0 NA intron (ENSMUSG00000028944.14, intron 1 of 15) protein_coding-intron (ENSMUSG00000028944.14, intron 1 of 15) -20007 ENSMUSG00000043833.6 ENSMUSG00000043833 ENSMUST00000128569 2900005J15Rik processed_transcript Interval_117550 chr4 124631601 124631823 + 0 NA intron (ENSMUSG00000098760.1, intron 1 of 1) antisense-intron (ENSMUSG00000098760.1, intron 1 of 1) -25095 ENSMUSG00000090125.3 ENSMUSG00000090125 ENSMUST00000053491 Pou3f1 protein_coding Interval_36444 chr12 44703095 44703786 + 0 NA Intergenic Intergenic -80778 ENSMUSG00000112823.1 ENSMUSG00000112823 ENSMUST00000217983 Gm6125 processed_pseudogene Interval_96961 chr2 130047909 130048377 + 0 NA intron (ENSMUSG00000027401.9, intron 12 of 12) protein_coding-intron (ENSMUSG00000027401.9, intron 12 of 12) -23581 ENSMUSG00000089152.1 ENSMUSG00000089152 ENSMUST00000158527 Gm22424 snoRNA Interval_161429 chr8 120423468 120423964 + 0 NA intron (ENSMUSG00000031822.20, intron 2 of 2) protein_coding-intron (ENSMUSG00000092329.1, intron 1 of 15) 19833 ENSMUSG00000080549.2 ENSMUSG00000080549 ENSMUST00000116899 Gm22715 miRNA Interval_137442 chr6 72481994 72482612 + 0 NA Intergenic Intergenic 37733 ENSMUSG00000052631.15 ENSMUSG00000052631 ENSMUST00000159577 Sh2d6 protein_coding Interval_98729 chr2 154539512 154539973 + 0 NA TTS (ENSMUSG00000038533.15) protein_coding-TTS (ENSMUSG00000038533.15) -7343 ENSMUSG00000038523.10 ENSMUSG00000038523 ENSMUST00000109709 1700003F12Rik protein_coding Interval_53246 chr14 55554326 55554880 + 0 NA Intergenic Intergenic 5805 ENSMUSG00000053588.4 ENSMUSG00000053588 ENSMUST00000066106 A730061H03Rik bidirectional_promoter_lncRNA Interval_163353 chr9 21024790 21025751 + 0 NA intron (ENSMUSG00000037405.8, intron 2 of 6) protein_coding-intron (ENSMUSG00000037405.8, intron 2 of 6) -4184 ENSMUSG00000001014.6 ENSMUSG00000001014 ENSMUST00000215077 Icam4 protein_coding Interval_59445 chr15 53214247 53214838 + 0 NA intron (ENSMUSG00000061731.9, intron 1 of 10) protein_coding-intron (ENSMUSG00000061731.9, intron 1 of 10) -106674 ENSMUSG00000061731.9 ENSMUSG00000061731 ENSMUST00000140798 Ext1 protein_coding Interval_122055 chr5 14833189 14833700 + 0 NA intron (ENSMUSG00000061601.15, intron 20 of 22) protein_coding-intron (ENSMUSG00000061601.15, intron 22 of 24) 28543 ENSMUSG00000104672.1 ENSMUSG00000104672 ENSMUST00000198672 Gm43665 TEC Interval_47072 chr13 75313437 75313779 + 0 NA Intergenic Intergenic 114394 ENSMUSG00000113264.1 ENSMUSG00000113264 ENSMUST00000220533 Gm19095 processed_pseudogene Interval_23678 chr11 24401621 24402279 + 0 NA Intergenic Intergenic -24296 ENSMUSG00000087085.1 ENSMUSG00000087085 ENSMUST00000153153 Gm12068 lincRNA Interval_40376 chr12 104507598 104508370 + 0 NA Intergenic Intergenic -11984 ENSMUSG00000112954.1 ENSMUSG00000112954 ENSMUST00000222329 Gm49732 lincRNA Interval_164394 chr9 36736178 36736574 + 0 NA intron (ENSMUSG00000032116.18, intron 15 of 17) protein_coding-intron (ENSMUSG00000032116.18, intron 15 of 17) -13631 ENSMUSG00000032113.16 ENSMUSG00000032113 ENSMUST00000172742 Chek1 protein_coding Interval_146192 chr7 44617220 44617515 + 0 NA intron (ENSMUSG00000030739.18, intron 32 of 40) protein_coding-intron (ENSMUSG00000030739.18, intron 33 of 41) 15418 ENSMUSG00000030739.18 ENSMUSG00000030739 ENSMUST00000208131 Myh14 protein_coding Interval_139545 chr6 100897718 100898106 + 0 NA Intergenic Intergenic 25244 ENSMUSG00000108074.1 ENSMUSG00000108074 ENSMUST00000205099 4930595O18Rik TEC Interval_27457 chr11 67964092 67964410 + 0 NA intron (ENSMUSG00000020904.11, intron 1 of 7) protein_coding-intron (ENSMUSG00000020904.11, intron 1 of 13) -2241 ENSMUSG00000020903.13 ENSMUSG00000020903 ENSMUST00000142649 Stx8 protein_coding Interval_131432 chr5 137157721 137158342 + 0 NA intron (ENSMUSG00000079174.3, intron 1 of 1) lincRNA-intron (ENSMUSG00000079174.3, intron 1 of 1) 8039 ENSMUSG00000079174.3 ENSMUSG00000079174 ENSMUST00000111075 Gm3054 lincRNA Interval_139092 chr6 95013097 95013531 + 0 NA Intergenic Intergenic 69480 ENSMUSG00000108187.1 ENSMUSG00000108187 ENSMUST00000203778 4930511E03Rik lincRNA Interval_62965 chr15 98284045 98284639 + 0 NA Intergenic Intergenic 11819 ENSMUSG00000022987.12 ENSMUSG00000022987 ENSMUST00000023722 Zfp641 protein_coding Interval_25453 chr11 48686431 48686643 + 0 NA Intergenic Intergenic 1828 ENSMUSG00000088425.1 ENSMUSG00000088425 ENSMUST00000157800 Gm24422 snoRNA Interval_50062 chr14 6980511 6981050 + 0 NA Intergenic Intergenic -6962 ENSMUSG00000091400.1 ENSMUSG00000091400 ENSMUST00000166618 Gm6356 protein_coding Interval_29777 chr11 86731196 86731944 + 0 NA intron (ENSMUSG00000047126.17, intron 4 of 31) protein_coding-intron (ENSMUSG00000047126.17, intron 4 of 31) -5087 ENSMUSG00000047126.17 ENSMUSG00000047126 ENSMUST00000133501 Cltc protein_coding Interval_162459 chr8 129029646 129030762 + 0 NA intron (ENSMUSG00000025808.17, intron 5 of 55) protein_coding-intron (ENSMUSG00000025808.17, intron 5 of 13) 12314 ENSMUSG00000077538.1 ENSMUSG00000077538 ENSMUST00000104350 Gm22545 snoRNA Interval_157437 chr8 70360731 70361875 + 0 NA Intergenic Intergenic -8092 ENSMUSG00000058301.8 ENSMUSG00000058301 ENSMUST00000075666 Upf1 protein_coding Interval_124104 chr5 38328710 38328913 + 0 NA Intergenic Intergenic -7914 ENSMUSG00000097029.2 ENSMUSG00000097029 ENSMUST00000181240 Gm26560 antisense Interval_42353 chr13 12296038 12296954 + 0 NA exon (ENSMUSG00000052374.16, exon 8 of 21) protein_coding-exon (ENSMUSG00000052374.16, exon 8 of 21) -22400 ENSMUSG00000052374.16 ENSMUSG00000052374 ENSMUST00000110616 Actn2 protein_coding Interval_120050 chr4 141536362 141537035 + 0 NA intron (ENSMUSG00000040761.16, intron 1 of 1) protein_coding-intron (ENSMUSG00000040761.16, intron 1 of 14) -9491 ENSMUSG00000048406.5 ENSMUSG00000048406 ENSMUST00000049927 B330016D10Rik pseudogene Interval_46709 chr13 69525222 69525642 + 0 NA intron (ENSMUSG00000034575.13, intron 1 of 12) protein_coding-intron (ENSMUSG00000034575.13, intron 1 of 12) 7000 ENSMUSG00000034575.13 ENSMUSG00000034575 ENSMUST00000222497 Tent4a protein_coding Interval_14191 chr10 28584415 28584819 + 0 NA intron (ENSMUSG00000019889.10, intron 1 of 6) protein_coding-intron (ENSMUSG00000019889.10, intron 24 of 31) -2376 ENSMUSG00000019889.10 ENSMUSG00000019889 ENSMUST00000220404 Ptprk protein_coding Interval_163018 chr9 14568147 14568436 + 0 NA intron (ENSMUSG00000013076.17, intron 7 of 13) protein_coding-intron (ENSMUSG00000013076.17, intron 6 of 12) -42530 ENSMUSG00000111612.1 ENSMUSG00000111612 ENSMUST00000213361 Gm47090 processed_pseudogene Interval_72543 chr17 30606591 30608339 + 0 NA exon (ENSMUSG00000117749.1, exon 1 of 1) TEC-exon (ENSMUSG00000117749.1, exon 1 of 1) 409 ENSMUSG00000117749.1 ENSMUSG00000117749 ENSMUST00000236095 Gm50245 TEC Interval_136978 chr6 65318221 65318565 + 0 NA Intergenic Intergenic -9712 ENSMUSG00000108052.1 ENSMUSG00000108052 ENSMUST00000203825 Gm8479 transcribed_processed_pseudogene Interval_28991 chr11 79760294 79761622 + 0 NA Intergenic Intergenic 34558 ENSMUSG00000065489.1 ENSMUSG00000065489 ENSMUST00000083555 Mir365-2 miRNA Interval_122983 chr5 28165310 28167310 + 0 NA exon (ENSMUSG00000039095.8, exon 1 of 2) protein_coding-exon (ENSMUSG00000039095.8, exon 1 of 2) 616 ENSMUSG00000039095.8 ENSMUSG00000039095 ENSMUST00000036177 En2 protein_coding Interval_140275 chr6 115985653 115987003 + 0 NA intron (ENSMUSG00000030123.15, intron 1 of 35) protein_coding-intron (ENSMUSG00000030123.15, intron 1 of 35) -29490 ENSMUSG00000030123.15 ENSMUSG00000030123 ENSMUST00000131590 Plxnd1 protein_coding Interval_11776 chr1 185346160 185346913 + 0 NA intron (ENSMUSG00000026617.16, intron 4 of 4) protein_coding-intron (ENSMUSG00000026617.16, intron 4 of 8) 14364 ENSMUSG00000026617.16 ENSMUSG00000026617 ENSMUST00000137757 Bpnt1 protein_coding Interval_98818 chr2 155283928 155284533 + 0 NA intron (ENSMUSG00000038383.16, intron 3 of 3) protein_coding-intron (ENSMUSG00000038383.16, intron 11 of 11) 7341 ENSMUSG00000027602.9 ENSMUSG00000027602 ENSMUST00000154596 Map1lc3a protein_coding Interval_24726 chr11 36266462 36267279 + 0 NA intron (ENSMUSG00000049336.16, intron 5 of 28) protein_coding-intron (ENSMUSG00000049336.16, intron 5 of 28) -11171 ENSMUSG00000086375.1 ENSMUSG00000086375 ENSMUST00000123278 Gm12127 antisense Interval_103292 chr3 38217227 38217632 + 0 NA Intergenic Intergenic -6022 ENSMUSG00000105943.1 ENSMUSG00000105943 ENSMUST00000198365 Gm2965 processed_pseudogene Interval_29322 chr11 82930051 82932747 + 0 NA intron (ENSMUSG00000018845.14, intron 13 of 19) protein_coding-intron (ENSMUSG00000018845.14, intron 13 of 19) 1983 ENSMUSG00000086058.1 ENSMUSG00000086058 ENSMUST00000156395 Unc45bos processed_transcript Interval_165600 chr9 50141666 50142056 + 0 NA Intergenic Intergenic 45184 ENSMUSG00000098012.1 ENSMUSG00000098012 ENSMUST00000182240 Gm8907 processed_pseudogene Interval_76672 chr17 83361045 83361898 + 0 NA intron (ENSMUSG00000032624.16, intron 1 of 22) protein_coding-intron (ENSMUSG00000032624.16, intron 1 of 20) 72925 ENSMUSG00000094256.2 ENSMUSG00000094256 ENSMUST00000077420 Rpl21-ps7 processed_pseudogene Interval_35823 chr12 30596555 30597287 + 0 NA Intergenic Intergenic 10007 ENSMUSG00000043061.10 ENSMUSG00000043061 ENSMUST00000218826 Tmem18 protein_coding Interval_1537 chr1 25049476 25050348 + 0 NA Intergenic Intergenic -22680 ENSMUSG00000099392.1 ENSMUSG00000099392 ENSMUST00000185379 Gm29414 lincRNA Interval_170996 chr9 113601270 113601598 + 0 NA intron (ENSMUSG00000109890.2, intron 1 of 4) lincRNA-intron (ENSMUSG00000109890.2, intron 1 of 4) 40620 ENSMUSG00000111364.1 ENSMUSG00000111364 ENSMUST00000213455 Gm36745 lincRNA Interval_115132 chr4 91316744 91317159 + 0 NA intron (ENSMUSG00000008489.18, intron 1 of 7) protein_coding-intron (ENSMUSG00000008489.18, intron 1 of 6) 39731 ENSMUSG00000008489.18 ENSMUSG00000008489 ENSMUST00000176151 Elavl2 protein_coding Interval_145327 chr7 33656304 33656560 + 0 NA intron (ENSMUSG00000085312.1, intron 3 of 3) lincRNA-intron (ENSMUSG00000085312.1, intron 3 of 3) 2992 ENSMUSG00000085312.1 ENSMUSG00000085312 ENSMUST00000151344 Gm12763 lincRNA Interval_82886 chr18 78237493 78238261 + 0 NA intron (ENSMUSG00000024552.16, intron 3 of 21) protein_coding-intron (ENSMUSG00000024552.16, intron 3 of 11) -95758 ENSMUSG00000059336.14 ENSMUSG00000059336 ENSMUST00000160639 Slc14a1 protein_coding Interval_107632 chr3 109030665 109031082 + 0 NA Intergenic Intergenic -3266 ENSMUSG00000040339.10 ENSMUSG00000040339 ENSMUST00000171143 Fam102b protein_coding Interval_69412 chr16 93020000 93020782 + 0 NA Intergenic Intergenic -52364 ENSMUSG00000098983.1 ENSMUSG00000098983 ENSMUST00000184529 Gm28003 miRNA Interval_14053 chr10 26280109 26280452 + 0 NA exon (ENSMUSG00000039089.15, exon 20 of 22) protein_coding-exon (ENSMUSG00000039089.15, exon 20 of 22) 35994 ENSMUSG00000039089.15 ENSMUSG00000039089 ENSMUST00000217699 L3mbtl3 protein_coding Interval_47132 chr13 76157749 76158773 + 0 NA intron (ENSMUSG00000033991.9, intron 38 of 44) protein_coding-intron (ENSMUSG00000033991.9, intron 38 of 43) 20416 ENSMUSG00000033991.9 ENSMUSG00000033991 ENSMUST00000225147 Ttc37 protein_coding Interval_20627 chr10 119691468 119692719 + 0 NA promoter-TSS (ENSMUSG00000034813.18) protein_coding-promoter-TSS (ENSMUSG00000034813.18) 39 ENSMUSG00000034813.18 ENSMUSG00000034813 ENSMUST00000081260 Grip1 protein_coding Interval_89541 chr2 22196678 22196897 + 0 NA Intergenic Intergenic -44270 ENSMUSG00000025716.14 ENSMUSG00000025716 ENSMUST00000149423 Myo3a protein_coding Interval_81771 chr18 64531423 64531632 + 0 NA exon (ENSMUSG00000039529.9, exon 28 of 28) protein_coding-exon (ENSMUSG00000039529.9, exon 28 of 28) -19650 ENSMUSG00000024587.10 ENSMUSG00000024587 ENSMUST00000237027 Nars protein_coding Interval_81694 chr18 63608426 63608664 + 0 NA Intergenic Intergenic 23809 ENSMUSG00000088656.1 ENSMUSG00000088656 ENSMUST00000158031 Gm24848 snRNA Interval_75136 chr17 63839547 63840268 + 0 NA Intergenic Intergenic -23155 ENSMUSG00000000127.15 ENSMUSG00000000127 ENSMUST00000038080 Fer protein_coding Interval_15691 chr10 53598819 53599129 + 0 NA TTS (ENSMUSG00000019857.7) protein_coding-TTS (ENSMUSG00000019857.7) 1522 ENSMUSG00000019857.7 ENSMUSG00000019857 ENSMUST00000218025 Asf1a protein_coding Interval_85856 chr19 32425824 32426296 + 0 NA Intergenic Intergenic 2868 ENSMUSG00000118355.1 ENSMUSG00000118355 ENSMUST00000237441 Gm38616 processed_pseudogene Interval_145206 chr7 30639150 30640213 + 0 NA Intergenic Intergenic -3829 ENSMUSG00000006311.8 ENSMUSG00000006311 ENSMUST00000108147 Etv2 protein_coding Interval_141125 chr6 125144758 125145926 + 0 NA promoter-TSS (ENSMUSG00000038271.17) protein_coding-promoter-TSS (ENSMUSG00000038271.17) -4186 ENSMUSG00000038271.17 ENSMUSG00000038271 ENSMUST00000150474 Iffo1 protein_coding Interval_3399 chr1 57979159 57979437 + 0 NA intron (ENSMUSG00000054770.16, intron 4 of 9) protein_coding-intron (ENSMUSG00000054770.16, intron 4 of 9) -16317 ENSMUSG00000054770.16 ENSMUSG00000054770 ENSMUST00000160130 Kctd18 protein_coding Interval_146345 chr7 45437221 45438141 + 0 NA intron (ENSMUSG00000003865.16, intron 2 of 14) protein_coding-intron (ENSMUSG00000003865.16, intron 2 of 15) 2804 ENSMUSG00000003865.16 ENSMUSG00000003865 ENSMUST00000209230 Gys1 protein_coding Interval_24344 chr11 32580311 32581338 + 0 NA intron (ENSMUSG00000020272.8, intron 4 of 18) protein_coding-intron (ENSMUSG00000020272.8, intron 4 of 18) -7771 ENSMUSG00000020272.8 ENSMUSG00000020272 ENSMUST00000143397 Stk10 protein_coding Interval_170058 chr9 104124338 104124726 + 0 NA intron (ENSMUSG00000090150.10, intron 2 of 2) protein_coding-intron (ENSMUSG00000090150.10, intron 19 of 19) 1782 ENSMUSG00000090150.10 ENSMUSG00000090150 ENSMUST00000128714 Acad11 protein_coding Interval_72925 chr17 33544358 33545075 + 0 NA intron (ENSMUSG00000024299.17, intron 2 of 12) protein_coding-intron (ENSMUSG00000024299.17, intron 14 of 24) 20506 ENSMUSG00000024299.17 ENSMUSG00000024299 ENSMUST00000174666 Adamts10 protein_coding Interval_50326 chr14 11865072 11866075 + 0 NA intron (ENSMUSG00000021745.14, intron 2 of 3) protein_coding-intron (ENSMUSG00000021745.14, intron 2 of 29) -2021 ENSMUSG00000114431.1 ENSMUSG00000114431 ENSMUST00000224051 Gm48601 TEC Interval_93872 chr2 77795882 77796603 + 0 NA intron (ENSMUSG00000027016.17, intron 1 of 3) protein_coding-intron (ENSMUSG00000027016.17, intron 1 of 3) -44374 ENSMUSG00000087102.1 ENSMUSG00000087102 ENSMUST00000154297 Gm13661 lincRNA Interval_136259 chr6 52335521 52336276 + 0 NA Intergenic Intergenic 11044 ENSMUSG00000059159.6 ENSMUSG00000059159 ENSMUST00000118230 Gm8129 processed_pseudogene Interval_170172 chr9 105884417 105884858 + 0 NA intron (ENSMUSG00000091345.9, intron 33 of 40) protein_coding-intron (ENSMUSG00000091345.9, intron 32 of 39) -56552 ENSMUSG00000043719.14 ENSMUSG00000043719 ENSMUST00000060896 Col6a6 protein_coding Interval_87883 chr19 56866849 56867178 + 0 NA intron (ENSMUSG00000025081.13, intron 25 of 25) protein_coding-intron (ENSMUSG00000025081.13, intron 25 of 25) -7236 ENSMUSG00000025082.8 ENSMUSG00000025082 ENSMUST00000026068 Vwa2 protein_coding Interval_46711 chr13 69544372 69545518 + 0 NA promoter-TSS (ENSMUSG00000051805.1) antisense-promoter-TSS (ENSMUSG00000051805.1) -922 ENSMUSG00000051805.1 ENSMUSG00000051805 ENSMUST00000070942 A530095I07Rik antisense Interval_167301 chr9 67153908 67154101 + 0 NA intron (ENSMUSG00000111556.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000111556.1, intron 1 of 2) 20443 ENSMUSG00000111556.1 ENSMUSG00000111556 ENSMUST00000215724 Gm19299 lincRNA Interval_127162 chr5 100729439 100729755 + 0 NA Intergenic Intergenic -9892 ENSMUSG00000035273.14 ENSMUSG00000035273 ENSMUST00000112908 Hpse protein_coding Interval_155434 chr8 33593769 33594545 + 0 NA Intergenic Intergenic -5468 ENSMUSG00000009630.10 ENSMUSG00000009630 ENSMUST00000009774 Ppp2cb protein_coding Interval_94299 chr2 87659752 87659955 + 0 NA Intergenic Intergenic -2911 ENSMUSG00000111747.2 ENSMUSG00000111747 ENSMUST00000099857 Olfr1134 protein_coding Interval_8465 chr1 139649803 139650725 + 0 NA intron (ENSMUSG00000090623.3, intron 1 of 5) unprocessed_pseudogene-intron (ENSMUSG00000090623.3, intron 1 of 5) 10635 ENSMUSG00000090623.3 ENSMUSG00000090623 ENSMUST00000170441 Cfhr3 unprocessed_pseudogene Interval_49133 chr13 108341056 108342022 + 0 NA intron (ENSMUSG00000021697.12, intron 1 of 4) protein_coding-intron (ENSMUSG00000021697.12, intron 2 of 10) -15887 ENSMUSG00000021697.12 ENSMUSG00000021697 ENSMUST00000172402 Depdc1b protein_coding Interval_19819 chr10 109664688 109665607 + 0 NA Intergenic Intergenic 16368 ENSMUSG00000112260.1 ENSMUSG00000112260 ENSMUST00000219153 3110043J17Rik TEC Interval_80846 chr18 49229002 49229570 + 0 NA Intergenic Intergenic -98969 ENSMUSG00000117724.1 ENSMUSG00000117724 ENSMUST00000235797 Gm50231 processed_pseudogene Interval_53192 chr14 55028828 55029665 + 0 NA Intergenic Intergenic 8357 ENSMUSG00000022204.9 ENSMUSG00000022204 ENSMUST00000226258 Ngdn protein_coding Interval_101734 chr3 9265860 9266120 + 0 NA intron (ENSMUSG00000069114.8, intron 2 of 5) protein_coding-intron (ENSMUSG00000069114.8, intron 2 of 5) 15388 ENSMUSG00000069114.8 ENSMUSG00000069114 ENSMUST00000155203 Zbtb10 protein_coding Interval_98692 chr2 154348489 154349274 + 0 NA intron (ENSMUSG00000027487.11, intron 11 of 14) protein_coding-intron (ENSMUSG00000027487.11, intron 10 of 13) 5463 ENSMUSG00000027487.11 ENSMUSG00000027487 ENSMUST00000137918 Cdk5rap1 protein_coding Interval_10903 chr1 176813407 176815084 + 0 NA promoter-TSS (ENSMUSG00000026504.17) protein_coding-promoter-TSS (ENSMUSG00000026504.17) -178 ENSMUSG00000057335.11 ENSMUSG00000057335 ENSMUST00000194263 Cep170 protein_coding Interval_53394 chr14 56885196 56888257 + 0 NA promoter-TSS (ENSMUSG00000021945.9) protein_coding-promoter-TSS (ENSMUSG00000021945.9) 21313 ENSMUSG00000114500.1 ENSMUSG00000114500 ENSMUST00000224747 Gm8983 processed_pseudogene Interval_73711 chr17 42917164 42917350 + 0 NA Intergenic Intergenic -86227 ENSMUSG00000061665.7 ENSMUSG00000061665 ENSMUST00000233626 Cd2ap protein_coding Interval_12133 chr1 189936336 189936790 + 0 NA Intergenic Intergenic -14310 ENSMUSG00000026603.13 ENSMUSG00000026603 ENSMUST00000144452 Smyd2 protein_coding Interval_73418 chr17 37084785 37085095 + 0 NA TTS (ENSMUSG00000056600.4) protein_coding-TTS (ENSMUSG00000056600.4) 3545 ENSMUSG00000056600.4 ENSMUSG00000056600 ENSMUST00000207101 Olfr90 protein_coding Interval_58617 chr15 36597897 36598557 + 0 NA promoter-TSS (ENSMUSG00000022283.15) protein_coding-promoter-TSS (ENSMUSG00000022283.15) 7239 ENSMUSG00000022283.15 ENSMUSG00000022283 ENSMUST00000226496 Pabpc1 protein_coding Interval_55304 chr14 81781175 81781387 + 0 NA Intergenic Intergenic -57889 ENSMUSG00000115175.1 ENSMUSG00000115175 ENSMUST00000228131 Gm18525 processed_pseudogene Interval_150921 chr7 116347396 116347959 + 0 NA intron (ENSMUSG00000030660.9, intron 12 of 17) protein_coding-intron (ENSMUSG00000030660.9, intron 27 of 32) -7048 ENSMUSG00000030660.9 ENSMUSG00000030660 ENSMUST00000205767 Pik3c2a protein_coding Interval_43326 chr13 29199687 29199998 + 0 NA intron (ENSMUSG00000006191.17, intron 15 of 16) protein_coding-intron (ENSMUSG00000006191.17, intron 15 of 16) 36778 ENSMUSG00000086423.1 ENSMUSG00000086423 ENSMUST00000137593 Gm11364 sense_intronic Interval_26291 chr11 55842704 55843373 + 0 NA intron (ENSMUSG00000086020.1, intron 1 of 4) antisense-intron (ENSMUSG00000086020.1, intron 1 of 4) 70950 ENSMUSG00000086020.1 ENSMUSG00000086020 ENSMUST00000134285 Gm12239 antisense Interval_19714 chr10 108264418 108265359 + 0 NA intron (ENSMUSG00000019907.10, intron 9 of 14) protein_coding-intron (ENSMUSG00000019907.10, intron 19 of 25) 15294 ENSMUSG00000019907.10 ENSMUSG00000019907 ENSMUST00000219559 Ppp1r12a protein_coding Interval_8533 chr1 140912360 140913066 + 0 NA Intergenic Intergenic 89386 ENSMUSG00000102500.1 ENSMUSG00000102500 ENSMUST00000194837 Gm37371 TEC Interval_48125 chr13 96431810 96432213 + 0 NA intron (ENSMUSG00000047117.13, intron 9 of 13) protein_coding-intron (ENSMUSG00000047117.13, intron 10 of 14) 27508 ENSMUSG00000021671.9 ENSMUSG00000021671 ENSMUST00000222792 Poc5 protein_coding Interval_13340 chr10 15791403 15794543 + 0 NA intron (ENSMUSG00000112227.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000112227.1, intron 1 of 2) 1196 ENSMUSG00000112227.1 ENSMUSG00000112227 ENSMUST00000218833 C330004P14Rik lincRNA Interval_44911 chr13 49701894 49702325 + 0 NA intron (ENSMUSG00000037851.13, intron 8 of 33) protein_coding-intron (ENSMUSG00000037851.13, intron 8 of 33) -12010 ENSMUSG00000077360.1 ENSMUSG00000077360 ENSMUST00000104172 Gm23482 snoRNA Interval_95737 chr2 115531497 115532400 + 0 NA Intergenic Intergenic -4204 ENSMUSG00000085582.7 ENSMUSG00000085582 ENSMUST00000125147 3110099E03Rik lincRNA Interval_147668 chr7 71421272 71421616 + 0 NA Intergenic Intergenic 69993 ENSMUSG00000099558.1 ENSMUSG00000099558 ENSMUST00000190004 Gm29295 lincRNA Interval_22875 chr11 16966007 16966281 + 0 NA Intergenic Intergenic 14769 ENSMUSG00000044966.4 ENSMUSG00000044966 ENSMUST00000061327 Fbxo48 protein_coding Interval_142784 chr6 145638641 145639400 + 0 NA Intergenic Intergenic 23263 ENSMUSG00000067338.6 ENSMUSG00000067338 ENSMUST00000087445 Tuba3b protein_coding Interval_26886 chr11 61300449 61301284 + 0 NA TTS (ENSMUSG00000069855.9) protein_coding-TTS (ENSMUSG00000069855.9) -33895 ENSMUSG00000064718.1 ENSMUSG00000064718 ENSMUST00000082784 Gm25929 snRNA Interval_147305 chr7 65704475 65705293 + 0 NA Intergenic Intergenic 11408 ENSMUSG00000078681.10 ENSMUSG00000078681 ENSMUST00000206361 Tm2d3 protein_coding Interval_54241 chr14 66814161 66814721 + 0 NA intron (ENSMUSG00000022048.8, intron 10 of 13) protein_coding-intron (ENSMUSG00000022048.8, intron 10 of 13) -16063 ENSMUSG00000114829.1 ENSMUSG00000114829 ENSMUST00000223821 Gm9130 processed_pseudogene Interval_87344 chr19 47849461 47849647 + 0 NA intron (ENSMUSG00000044948.17, intron 1 of 13) protein_coding-intron (ENSMUSG00000044948.17, intron 1 of 13) -5484 ENSMUSG00000025068.8 ENSMUSG00000025068 ENSMUST00000143694 Gsto1 protein_coding Interval_60780 chr15 76710075 76711032 + 0 NA promoter-TSS (ENSMUSG00000033728.14) protein_coding-promoter-TSS (ENSMUSG00000033728.14) -5 ENSMUSG00000033762.8 ENSMUSG00000033762 ENSMUST00000229360 Recql4 protein_coding Interval_163980 chr9 30264580 30265073 + 0 NA Intergenic Intergenic 27148 ENSMUSG00000096018.1 ENSMUSG00000096018 ENSMUST00000179026 Gm26435 snRNA Interval_90759 chr2 32350380 32350887 + 0 NA intron (ENSMUSG00000026825.17, intron 1 of 4) protein_coding-intron (ENSMUSG00000026825.17, intron 1 of 22) 2669 ENSMUSG00000026825.17 ENSMUSG00000026825 ENSMUST00000139238 Dnm1 protein_coding Interval_138876 chr6 92816290 92816960 + 0 NA exon (ENSMUSG00000048636.7, exon 1 of 5) protein_coding-exon (ENSMUSG00000048636.7, exon 1 of 5) -11007 ENSMUSG00000048636.7 ENSMUSG00000048636 ENSMUST00000133858 A730049H05Rik protein_coding Interval_49525 chr13 112711270 112712221 + 0 NA intron (ENSMUSG00000047789.5, intron 10 of 14) protein_coding-intron (ENSMUSG00000047789.5, intron 10 of 14) 12066 ENSMUSG00000114418.1 ENSMUSG00000114418 ENSMUST00000224669 Gm18883 processed_pseudogene Interval_3644 chr1 60342933 60343973 + 0 NA exon (ENSMUSG00000049439.13, exon 1 of 13) protein_coding-exon (ENSMUSG00000049439.13, exon 1 of 13) 130 ENSMUSG00000049439.13 ENSMUSG00000049439 ENSMUST00000148443 Cyp20a1 protein_coding Interval_137204 chr6 69952085 69952663 + 0 NA Intergenic Intergenic -8726 ENSMUSG00000076570.6 ENSMUSG00000076570 ENSMUST00000103371 Igkv12-38 IG_V_gene Interval_78071 chr18 7665039 7665240 + 0 NA Intergenic Intergenic 27587 ENSMUSG00000117542.1 ENSMUSG00000117542 ENSMUST00000234387 Gm18763 processed_pseudogene Interval_43122 chr13 24374500 24374683 + 0 NA intron (ENSMUSG00000084788.2, intron 2 of 5) protein_coding-intron (ENSMUSG00000016756.17, intron 2 of 17) 35849 ENSMUSG00000083165.1 ENSMUSG00000083165 ENSMUST00000122011 Gm11344 processed_pseudogene Interval_122027 chr5 14222534 14224681 + 0 NA intron (ENSMUSG00000063531.7, intron 5 of 15) protein_coding-intron (ENSMUSG00000063531.7, intron 5 of 16) -6500 ENSMUSG00000063531.7 ENSMUSG00000063531 ENSMUST00000199698 Sema3e protein_coding Interval_167707 chr9 72191955 72193159 + 0 NA Intergenic Intergenic -12799 ENSMUSG00000099020.1 ENSMUSG00000099020 ENSMUST00000185132 Gm27159 lincRNA Interval_85991 chr19 34788134 34789398 + 0 NA Intergenic Intergenic -7412 ENSMUSG00000088212.1 ENSMUSG00000088212 ENSMUST00000157587 Gm22082 snRNA Interval_161719 chr8 122318874 122321007 + 0 NA intron (ENSMUSG00000049577.15, intron 2 of 2) protein_coding-intron (ENSMUSG00000049577.15, intron 3 of 9) -14691 ENSMUSG00000049577.15 ENSMUSG00000049577 ENSMUST00000212315 Zfpm1 protein_coding Interval_120758 chr4 150482378 150484714 + 0 NA intron (ENSMUSG00000039852.17, intron 7 of 22) protein_coding-intron (ENSMUSG00000039852.17, intron 7 of 22) 84998 ENSMUSG00000085213.1 ENSMUSG00000085213 ENSMUST00000128800 Gm13091 antisense Interval_14686 chr10 39000666 39001207 + 0 NA intron (ENSMUSG00000019846.11, intron 1 of 9) protein_coding-intron (ENSMUSG00000019846.11, intron 1 of 37) 72647 ENSMUSG00000111431.1 ENSMUSG00000111431 ENSMUST00000213395 Gm17779 processed_pseudogene Interval_58195 chr15 30650053 30650421 + 0 NA intron (ENSMUSG00000022240.10, intron 1 of 1) protein_coding-intron (ENSMUSG00000022240.10, intron 7 of 22) -23616 ENSMUSG00000115337.1 ENSMUSG00000115337 ENSMUST00000228499 4930570B17Rik antisense Interval_134727 chr6 31006024 31006217 + 0 NA Intergenic Intergenic -47042 ENSMUSG00000073209.4 ENSMUSG00000073209 ENSMUST00000101589 Klf14 protein_coding Interval_28156 chr11 73301715 73302220 + 0 NA Intergenic Intergenic 27629 ENSMUSG00000020774.9 ENSMUSG00000020774 ENSMUST00000141898 Aspa protein_coding Interval_173634 chrX 101314057 101314236 + 0 NA promoter-TSS (ENSMUSG00000031302.16) protein_coding-promoter-TSS (ENSMUSG00000031302.16) 14952 ENSMUSG00000031302.16 ENSMUSG00000031302 ENSMUST00000144860 Nlgn3 protein_coding Interval_5869 chr1 92831117 92832922 + 0 NA promoter-TSS (ENSMUSG00000034220.7) protein_coding-promoter-TSS (ENSMUSG00000034220.7) 50 ENSMUSG00000034220.7 ENSMUSG00000034220 ENSMUST00000190215 Gpc1 protein_coding Interval_97869 chr2 144593117 144594697 + 0 NA promoter-TSS (ENSMUSG00000074754.4) protein_coding-promoter-TSS (ENSMUSG00000074754.4) -147 ENSMUSG00000074754.4 ENSMUSG00000074754 ENSMUST00000136628 Smim26 protein_coding Interval_121237 chr4 154290779 154291750 + 0 NA exon (ENSMUSG00000029032.12, exon 2 of 15) protein_coding-exon (ENSMUSG00000029032.12, exon 2 of 15) 10399 ENSMUSG00000029032.12 ENSMUSG00000029032 ENSMUST00000152947 Arhgef16 protein_coding Interval_121015 chr4 152221027 152222015 + 0 NA intron (ENSMUSG00000028937.14, intron 3 of 8) protein_coding-intron (ENSMUSG00000028937.14, intron 3 of 8) 17595 ENSMUSG00000085724.1 ENSMUSG00000085724 ENSMUST00000127752 Gm13096 sense_intronic Interval_135089 chr6 35307677 35308717 + 0 NA promoter-TSS (ENSMUSG00000029843.4) protein_coding-promoter-TSS (ENSMUSG00000029843.4) 17944 ENSMUSG00000047420.8 ENSMUSG00000047420 ENSMUST00000051176 Fam180a protein_coding Interval_166713 chr9 62214528 62215936 + 0 NA Intergenic Intergenic -26438 ENSMUSG00000110826.1 ENSMUSG00000110826 ENSMUST00000217557 Gm47262 lincRNA Interval_165354 chr9 46541070 46541634 + 0 NA intron (ENSMUSG00000110767.1, intron 2 of 2) lincRNA-intron (ENSMUSG00000110767.1, intron 2 of 2) 8595 ENSMUSG00000110767.1 ENSMUSG00000110767 ENSMUST00000214727 Gm31432 lincRNA Interval_134992 chr6 34374679 34375774 + 0 NA intron (ENSMUSG00000081991.1, intron 2 of 2) unprocessed_pseudogene-intron (ENSMUSG00000081991.1, intron 2 of 2) 5219 ENSMUSG00000081196.1 ENSMUSG00000081196 ENSMUST00000118862 Gm13858 unprocessed_pseudogene Interval_128177 chr5 111541711 111542527 + 0 NA Intergenic Intergenic -39442 ENSMUSG00000052848.7 ENSMUSG00000052848 ENSMUST00000198458 C130026L21Rik lincRNA Interval_26027 chr11 53549835 53550161 + 0 NA TTS (ENSMUSG00000018398.18) protein_coding-TTS (ENSMUSG00000018398.18) 17307 ENSMUSG00000086851.1 ENSMUSG00000086851 ENSMUST00000153461 A430108G06Rik processed_transcript Interval_75006 chr17 59825981 59826830 + 0 NA Intergenic Intergenic -28812 ENSMUSG00000117191.1 ENSMUSG00000117191 ENSMUST00000233598 Gm49853 lincRNA Interval_138610 chr6 90422292 90423402 + 0 NA intron (ENSMUSG00000048794.14, intron 2 of 3) protein_coding-intron (ENSMUSG00000048794.14, intron 1 of 14) 5566 ENSMUSG00000048794.14 ENSMUSG00000048794 ENSMUST00000128124 Cfap100 protein_coding Interval_98837 chr2 155441250 155441805 + 0 NA promoter-TSS (ENSMUSG00000038369.14) protein_coding-promoter-TSS (ENSMUSG00000038369.14) 19365 ENSMUSG00000080237.2 ENSMUSG00000080237 ENSMUST00000116491 Gm14239 processed_pseudogene Interval_28560 chr11 76710253 76710445 + 0 NA Intergenic Intergenic 30541 ENSMUSG00000046275.2 ENSMUSG00000046275 ENSMUST00000062024 Trarg1 protein_coding Interval_103746 chr3 52289943 52290821 + 0 NA intron (ENSMUSG00000044167.6, intron 1 of 2) protein_coding-intron (ENSMUSG00000044167.6, intron 1 of 2) 8141 ENSMUSG00000102844.1 ENSMUSG00000102844 ENSMUST00000193915 Gm38034 TEC Interval_165628 chr9 50500683 50501864 + 0 NA intron (ENSMUSG00000032068.14, intron 3 of 3) protein_coding-intron (ENSMUSG00000032068.14, intron 3 of 3) 3532 ENSMUSG00000101304.1 ENSMUSG00000101304 ENSMUST00000190941 Plet1os antisense Interval_17707 chr10 79671550 79673607 + 0 NA intron (ENSMUSG00000020308.7, intron 1 of 1) protein_coding-intron (ENSMUSG00000020308.7, intron 1 of 1) 3168 ENSMUSG00000020308.7 ENSMUSG00000020308 ENSMUST00000220175 Tpgs1 protein_coding Interval_45426 chr13 55101949 55102351 + 0 NA Intergenic Intergenic -1896 ENSMUSG00000025878.16 ENSMUSG00000025878 ENSMUST00000124561 Uimc1 protein_coding Interval_13258 chr10 13682434 13682807 + 0 NA intron (ENSMUSG00000019806.13, intron 4 of 5) protein_coding-intron (ENSMUSG00000019806.13, intron 4 of 5) 55422 ENSMUSG00000112055.1 ENSMUSG00000112055 ENSMUST00000219684 Gm48773 lincRNA Interval_95247 chr2 105172241 105172506 + 0 NA TTS (ENSMUSG00000016458.15) protein_coding-TTS (ENSMUSG00000016458.15) 9565 ENSMUSG00000016458.15 ENSMUSG00000016458 ENSMUST00000153944 Wt1 protein_coding Interval_68202 chr16 67990085 67990489 + 0 NA Intergenic Intergenic 17074 ENSMUSG00000116666.1 ENSMUSG00000116666 ENSMUST00000232463 Gm49649 processed_pseudogene Interval_50694 chr14 18293738 18294435 + 0 NA intron (ENSMUSG00000021774.13, intron 3 of 5) protein_coding-intron (ENSMUSG00000021774.13, intron 3 of 5) 22822 ENSMUSG00000021772.15 ENSMUSG00000021772 ENSMUST00000156186 Nkiras1 protein_coding Interval_98680 chr2 154223139 154224515 + 0 NA promoter-TSS (ENSMUSG00000038572.7) protein_coding-promoter-TSS (ENSMUSG00000038572.7) 85 ENSMUSG00000038572.7 ENSMUSG00000038572 ENSMUST00000045959 Bpifb5 protein_coding Interval_172855 chrX 52167341 52168376 + 0 NA Intergenic Intergenic -2606 ENSMUSG00000031119.4 ENSMUSG00000031119 ENSMUST00000033450 Gpc4 protein_coding Interval_114530 chr4 82310928 82311735 + 0 NA intron (ENSMUSG00000008575.17, intron 8 of 9) protein_coding-intron (ENSMUSG00000008575.17, intron 8 of 9) -128079 ENSMUSG00000084595.1 ENSMUSG00000084595 ENSMUST00000122646 n-R5s188 rRNA Interval_57918 chr15 25387726 25388185 + 0 NA intron (ENSMUSG00000045763.8, intron 1 of 1) protein_coding-intron (ENSMUSG00000045763.8, intron 1 of 1) 25743 ENSMUSG00000045763.8 ENSMUSG00000045763 ENSMUST00000228597 Basp1 protein_coding Interval_80632 chr18 44869817 44870238 + 0 NA intron (ENSMUSG00000034653.11, intron 10 of 16) protein_coding-intron (ENSMUSG00000034653.11, intron 23 of 29) 14792 ENSMUSG00000034653.11 ENSMUSG00000034653 ENSMUST00000202176 Ythdc2 protein_coding Interval_102191 chr3 19305579 19305970 + 0 NA intron (ENSMUSG00000069094.12, intron 1 of 8) protein_coding-intron (ENSMUSG00000069094.12, intron 1 of 12) 5278 ENSMUSG00000069094.12 ENSMUSG00000069094 ENSMUST00000143120 Pde7a protein_coding Interval_148913 chr7 90006496 90007805 + 0 NA intron (ENSMUSG00000097585.2, intron 6 of 8) processed_transcript-intron (ENSMUSG00000097585.2, intron 6 of 8) -22010 ENSMUSG00000097585.2 ENSMUSG00000097585 ENSMUST00000208266 E230029C05Rik processed_transcript Interval_153733 chr8 5639576 5639782 + 0 NA promoter-TSS (ENSMUSG00000043192.4) processed_pseudogene-promoter-TSS (ENSMUSG00000043192.4) 99 ENSMUSG00000043192.4 ENSMUSG00000043192 ENSMUST00000051687 Gpi-ps processed_pseudogene Interval_69423 chr16 93188844 93189183 + 0 NA Intergenic Intergenic 116258 ENSMUSG00000098983.1 ENSMUSG00000098983 ENSMUST00000184529 Gm28003 miRNA Interval_154677 chr8 22522509 22522793 + 0 NA intron (ENSMUSG00000037656.9, intron 2 of 2) protein_coding-intron (ENSMUSG00000037656.9, intron 1 of 10) 16425 ENSMUSG00000037656.9 ENSMUSG00000037656 ENSMUST00000210388 Slc20a2 protein_coding Interval_108825 chr3 132037118 132038131 + 0 NA Intergenic Intergenic 44768 ENSMUSG00000064992.1 ENSMUSG00000064992 ENSMUST00000083058 Gm22421 snRNA Interval_173657 chrX 101527112 101527947 + 0 NA Intergenic Intergenic 8544 ENSMUSG00000081674.1 ENSMUSG00000081674 ENSMUST00000120403 Gm6184 processed_pseudogene Interval_7704 chr1 133168634 133169135 + 0 NA intron (ENSMUSG00000041757.17, intron 1 of 9) protein_coding-intron (ENSMUSG00000041757.17, intron 1 of 9) -37102 ENSMUSG00000102425.1 ENSMUSG00000102425 ENSMUST00000193049 Gm26616 TEC Interval_127613 chr5 105779511 105779850 + 0 NA intron (ENSMUSG00000046079.16, intron 1 of 2) protein_coding-intron (ENSMUSG00000046079.16, intron 2 of 2) 18033 ENSMUSG00000067058.7 ENSMUSG00000067058 ENSMUST00000132586 Rps15a-ps5 processed_pseudogene Interval_72158 chr17 28330994 28333665 + 0 NA TTS (ENSMUSG00000002249.21) protein_coding-TTS (ENSMUSG00000002249.21) 3759 ENSMUSG00000037805.15 ENSMUSG00000037805 ENSMUST00000141049 Rpl10a protein_coding Interval_43557 chr13 33177029 33177307 + 0 NA Intergenic Intergenic -15791 ENSMUSG00000054266.2 ENSMUSG00000054266 ENSMUST00000067198 Serpinb9d protein_coding Interval_22029 chr11 5868498 5868775 + 0 NA promoter-TSS (ENSMUSG00000020473.13) protein_coding-promoter-TSS (ENSMUSG00000020473.13) -512 ENSMUSG00000020473.13 ENSMUSG00000020473 ENSMUST00000138103 Aebp1 protein_coding Interval_88219 chr19 60765880 60766842 + 0 NA exon (ENSMUSG00000024991.8, exon 19 of 22) protein_coding-exon (ENSMUSG00000024991.8, exon 19 of 22) 8036 ENSMUSG00000105118.1 ENSMUSG00000105118 ENSMUST00000199618 Mir3084-2 miRNA Interval_81883 chr18 65599526 65600423 + 0 NA intron (ENSMUSG00000042439.13, intron 3 of 3) protein_coding-intron (ENSMUSG00000042439.13, intron 2 of 5) -3860 ENSMUSG00000103194.1 ENSMUSG00000103194 ENSMUST00000195369 Gm37643 TEC Interval_29652 chr11 85831152 85833548 + 0 NA promoter-TSS (ENSMUSG00000000093.6) protein_coding-promoter-TSS (ENSMUSG00000000093.6) -141 ENSMUSG00000087013.7 ENSMUSG00000087013 ENSMUST00000128213 2610027K06Rik processed_transcript Interval_96197 chr2 120478527 120479057 + 0 NA intron (ENSMUSG00000079110.12, intron 1 of 20) protein_coding-intron (ENSMUSG00000079110.12, intron 1 of 20) 15139 ENSMUSG00000079110.12 ENSMUSG00000079110 ENSMUST00000151342 Capn3 protein_coding Interval_8768 chr1 150770728 150771867 + 0 NA intron (ENSMUSG00000066842.18, intron 13 of 105) protein_coding-intron (ENSMUSG00000066842.18, intron 13 of 106) 145998 ENSMUSG00000093650.2 ENSMUSG00000093650 ENSMUST00000177268 Gm20631 antisense Interval_89743 chr2 25172689 25173086 + 0 NA intron (ENSMUSG00000118563.1, intron 13 of 13) unitary_pseudogene-intron (ENSMUSG00000118563.1, intron 13 of 13) -7871 ENSMUSG00000078202.3 ENSMUSG00000078202 ENSMUST00000104999 Nrarp protein_coding Interval_23995 chr11 29241437 29241776 + 0 NA intron (ENSMUSG00000020462.14, intron 3 of 6) protein_coding-intron (ENSMUSG00000020462.14, intron 3 of 9) 5462 ENSMUSG00000020462.14 ENSMUSG00000020462 ENSMUST00000127940 Cfap36 protein_coding Interval_154629 chr8 22145439 22146382 + 0 NA intron (ENSMUSG00000031478.16, intron 9 of 14) protein_coding-intron (ENSMUSG00000031478.16, intron 10 of 15) 16584 ENSMUSG00000031478.16 ENSMUSG00000031478 ENSMUST00000151371 Nek3 protein_coding Interval_57375 chr15 10299385 10299891 + 0 NA intron (ENSMUSG00000005268.20, intron 2 of 9) protein_coding-intron (ENSMUSG00000005268.20, intron 2 of 8) -25742 ENSMUSG00000094814.1 ENSMUSG00000094814 ENSMUST00000157020 Gm21973 protein_coding Interval_138260 chr6 86683903 86684975 + 0 NA promoter-TSS (ENSMUSG00000001158.13) protein_coding-promoter-TSS (ENSMUSG00000001158.13) 78 ENSMUSG00000001158.13 ENSMUSG00000001158 ENSMUST00000133404 Snrnp27 protein_coding Interval_145387 chr7 34374042 34374806 + 0 NA intron (ENSMUSG00000066568.12, intron 2 of 9) protein_coding-intron (ENSMUSG00000066568.12, intron 2 of 10) -9093 ENSMUSG00000108447.1 ENSMUSG00000108447 ENSMUST00000205645 Gm44567 TEC Interval_22105 chr11 6368143 6368473 + 0 NA Intergenic Intergenic -28421 ENSMUSG00000041164.15 ENSMUSG00000041164 ENSMUST00000124588 Zmiz2 protein_coding Interval_48685 chr13 101213825 101214046 + 0 NA Intergenic Intergenic -18192 ENSMUSG00000114590.1 ENSMUSG00000114590 ENSMUST00000223648 5930438M14Rik lincRNA Interval_3511 chr1 59212853 59213189 + 0 NA intron (ENSMUSG00000026024.14, intron 4 of 33) protein_coding-intron (ENSMUSG00000026024.14, intron 4 of 33) 6105 ENSMUSG00000026024.14 ENSMUSG00000026024 ENSMUST00000188469 Als2 protein_coding Interval_88196 chr19 60580111 60581771 + 0 NA promoter-TSS (ENSMUSG00000033417.16) protein_coding-promoter-TSS (ENSMUSG00000033417.16) 412 ENSMUSG00000092655.1 ENSMUSG00000092655 ENSMUST00000174914 Gm25238 miRNA Interval_140908 chr6 122702035 122703518 + 0 NA Intergenic Intergenic -3748 ENSMUSG00000080932.3 ENSMUSG00000080932 ENSMUST00000119496 Gm10224 processed_pseudogene Interval_174280 chrX 143080479 143080970 + 0 NA Intergenic Intergenic -18870 ENSMUSG00000085584.3 ENSMUSG00000085584 ENSMUST00000165829 Rtl9 protein_coding Interval_79573 chr18 33833528 33833977 + 0 NA promoter-TSS (ENSMUSG00000024376.7) protein_coding-promoter-TSS (ENSMUSG00000024376.7) 38588 ENSMUSG00000092819.1 ENSMUSG00000092819 ENSMUST00000175078 Gm23639 snoRNA Interval_103198 chr3 36599788 36600011 + 0 NA intron (ENSMUSG00000037325.10, intron 8 of 18) protein_coding-intron (ENSMUSG00000037325.10, intron 8 of 18) -22614 ENSMUSG00000037325.10 ENSMUSG00000037325 ENSMUST00000142333 Bbs7 protein_coding Interval_68894 chr16 87950156 87950457 + 0 NA intron (ENSMUSG00000022935.16, intron 8 of 12) protein_coding-intron (ENSMUSG00000022935.16, intron 8 of 15) 162734 ENSMUSG00000055972.5 ENSMUSG00000055972 ENSMUST00000189929 2810407A14Rik lincRNA Interval_166667 chr9 61724201 61724810 + 0 NA Intergenic Intergenic -38579 ENSMUSG00000111739.1 ENSMUSG00000111739 ENSMUST00000213572 Gm47241 processed_pseudogene Interval_11284 chr1 180719364 180720777 + 0 NA Intergenic Intergenic -1544 ENSMUSG00000104202.1 ENSMUSG00000104202 ENSMUST00000192796 Gm8101 processed_pseudogene Interval_114856 chr4 86406642 86407221 + 0 NA intron (ENSMUSG00000066113.16, intron 23 of 28) protein_coding-intron (ENSMUSG00000066113.16, intron 10 of 15) 35410 ENSMUSG00000083272.1 ENSMUSG00000083272 ENSMUST00000118478 Gm12550 processed_pseudogene Interval_58969 chr15 41138056 41138259 + 0 NA Intergenic Intergenic -35330 ENSMUSG00000048559.5 ENSMUSG00000048559 ENSMUST00000060066 4930555K19Rik processed_pseudogene Interval_49964 chr13 118988501 118989210 + 0 NA Intergenic Intergenic -130441 ENSMUSG00000114868.1 ENSMUSG00000114868 ENSMUST00000224309 Gm47335 processed_pseudogene Interval_172041 chr9 123806104 123806329 + 0 NA promoter-TSS (ENSMUSG00000048521.8) protein_coding-promoter-TSS (ENSMUSG00000048521.8) -283 ENSMUSG00000048521.8 ENSMUSG00000048521 ENSMUST00000216072 Cxcr6 protein_coding Interval_89026 chr2 14720251 14720604 + 0 NA promoter-TSS (ENSMUSG00000083305.2) processed_pseudogene-promoter-TSS (ENSMUSG00000083305.2) -707 ENSMUSG00000083305.2 ENSMUSG00000083305 ENSMUST00000120376 Gm13315 processed_pseudogene Interval_21563 chr10 129943362 129943661 + 0 NA TTS (ENSMUSG00000058071.4) protein_coding-TTS (ENSMUSG00000058071.4) 5576 ENSMUSG00000058071.4 ENSMUSG00000058071 ENSMUST00000205227 Olfr818 protein_coding Interval_13914 chr10 24615543 24616934 + 0 NA Intergenic Intergenic 20512 ENSMUSG00000019997.11 ENSMUSG00000019997 ENSMUST00000129142 Ccn2 protein_coding Interval_60270 chr15 71799234 71800332 + 0 NA intron (ENSMUSG00000079022.10, intron 52 of 52) protein_coding-intron (ENSMUSG00000079022.10, intron 63 of 63) 5213 ENSMUSG00000115868.1 ENSMUSG00000115868 ENSMUST00000230974 Gm2999 processed_pseudogene Interval_59388 chr15 52039856 52040827 + 0 NA exon (ENSMUSG00000068522.4, exon 1 of 2) protein_coding-exon (ENSMUSG00000068522.4, exon 1 of 2) 234 ENSMUSG00000068522.4 ENSMUSG00000068522 ENSMUST00000090025 Aard protein_coding Interval_28756 chr11 78123352 78124296 + 0 NA intron (ENSMUSG00000037750.16, intron 1 of 2) protein_coding-intron (ENSMUSG00000037750.16, intron 1 of 2) 8218 ENSMUSG00000037750.16 ENSMUSG00000037750 ENSMUST00000155571 Fam222b protein_coding Interval_124678 chr5 53176469 53177201 + 0 NA intron (ENSMUSG00000029189.10, intron 6 of 11) protein_coding-intron (ENSMUSG00000029189.10, intron 6 of 23) 33675 ENSMUSG00000077316.1 ENSMUSG00000077316 ENSMUST00000104128 n-R5s171 rRNA Interval_90683 chr2 31870264 31870967 + 0 NA Intergenic Intergenic -16676 ENSMUSG00000026840.14 ENSMUSG00000026840 ENSMUST00000135995 Lamc3 protein_coding Interval_11148 chr1 179664534 179665010 + 0 NA Intergenic Intergenic -19073 ENSMUSG00000038936.13 ENSMUSG00000038936 ENSMUST00000192611 Sccpdh protein_coding Interval_97287 chr2 133045006 133045517 + 0 NA Intergenic Intergenic 2291 ENSMUSG00000082940.1 ENSMUSG00000082940 ENSMUST00000119075 Gm14103 processed_pseudogene Interval_36868 chr12 54824999 54826045 + 0 NA Intergenic Intergenic -29835 ENSMUSG00000005656.9 ENSMUSG00000005656 ENSMUST00000219865 Snx6 protein_coding Interval_11362 chr1 181230352 181231247 + 0 NA Intergenic Intergenic 4813 ENSMUSG00000054135.2 ENSMUSG00000054135 ENSMUST00000066988 A430110L20Rik lincRNA Interval_139347 chr6 99203202 99205167 + 0 NA intron (ENSMUSG00000030067.17, intron 4 of 4) protein_coding-intron (ENSMUSG00000030067.17, intron 2 of 3) -128127 ENSMUSG00000105902.1 ENSMUSG00000105902 ENSMUST00000200105 Gm49348 miRNA Interval_29974 chr11 88479550 88479896 + 0 NA exon (ENSMUSG00000069769.13, exon 7 of 7) protein_coding-exon (ENSMUSG00000069769.13, exon 7 of 7) -46209 ENSMUSG00000084411.2 ENSMUSG00000084411 ENSMUST00000120278 Gm11510 processed_pseudogene Interval_4285 chr1 72388789 72389015 + 0 NA intron (ENSMUSG00000026187.9, intron 19 of 20) protein_coding-intron (ENSMUSG00000026187.9, intron 19 of 20) -70597 ENSMUSG00000085812.1 ENSMUSG00000085812 ENSMUST00000146593 Gm15843 processed_pseudogene Interval_20378 chr10 117184380 117185083 + 0 NA Intergenic Intergenic -1320 ENSMUSG00000088397.1 ENSMUSG00000088397 ENSMUST00000157772 Gm26311 snoRNA Interval_158559 chr8 84470973 84471865 + 0 NA intron (ENSMUSG00000034656.18, intron 5 of 48) protein_coding-intron (ENSMUSG00000034656.18, intron 3 of 46) -90838 ENSMUSG00000064392.1 ENSMUSG00000064392 ENSMUST00000082458 Gm23626 snoRNA Interval_124876 chr5 58685736 58685931 + 0 NA Intergenic Intergenic 232794 ENSMUSG00000100557.1 ENSMUSG00000100557 ENSMUST00000189036 1700029E06Rik lincRNA Interval_6855 chr1 120111632 120112823 + 0 NA Intergenic Intergenic 8710 ENSMUSG00000026385.16 ENSMUSG00000026385 ENSMUST00000149628 Dbi protein_coding Interval_118717 chr4 133338704 133339868 + 0 NA promoter-TSS (ENSMUSG00000037622.14) protein_coding-promoter-TSS (ENSMUSG00000037622.14) -17056 ENSMUSG00000037622.14 ENSMUSG00000037622 ENSMUST00000140976 Wdtc1 protein_coding Interval_76566 chr17 81183517 81183868 + 0 NA Intergenic Intergenic 63046 ENSMUSG00000117496.1 ENSMUSG00000117496 ENSMUST00000234904 Gm50042 processed_pseudogene Interval_62223 chr15 88921179 88922065 + 0 NA intron (ENSMUSG00000022388.14, intron 8 of 11) protein_coding-intron (ENSMUSG00000022388.14, intron 8 of 11) -30097 ENSMUSG00000093394.1 ENSMUSG00000093394 ENSMUST00000176338 Gm20621 sense_overlapping Interval_170579 chr9 108991435 108992306 + 0 NA promoter-TSS (ENSMUSG00000025648.18) protein_coding-promoter-TSS (ENSMUSG00000025648.18) -300 ENSMUSG00000103811.1 ENSMUSG00000103811 ENSMUST00000192972 Gm38004 lincRNA Interval_98344 chr2 151631547 151632855 + 0 NA exon (ENSMUSG00000027457.15, exon 2 of 6) protein_coding-exon (ENSMUSG00000027457.15, exon 2 of 6) 360 ENSMUSG00000027457.15 ENSMUSG00000027457 ENSMUST00000133378 Snph protein_coding Interval_83957 chr19 5806014 5807028 + 0 NA Intergenic Intergenic 4580 ENSMUSG00000102349.1 ENSMUSG00000102349 ENSMUST00000192176 Gm37376 TEC Interval_78473 chr18 13305238 13306365 + 0 NA intron (ENSMUSG00000117536.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000117536.1, intron 1 of 2) 537 ENSMUSG00000117536.1 ENSMUSG00000117536 ENSMUST00000234045 Gm41669 lincRNA Interval_98122 chr2 148406238 148409413 + 0 NA exon (ENSMUSG00000074743.4, exon 1 of 1) protein_coding-exon (ENSMUSG00000074743.4, exon 1 of 1) 363 ENSMUSG00000074743.4 ENSMUSG00000074743 ENSMUST00000099270 Thbd protein_coding Interval_156764 chr8 58289887 58290203 + 0 NA intron (ENSMUSG00000096914.3, intron 5 of 12) protein_coding-intron (ENSMUSG00000096914.3, intron 5 of 12) 43458 ENSMUSG00000109963.1 ENSMUSG00000109963 ENSMUST00000211516 Gm45635 TEC Interval_89677 chr2 24479840 24480249 + 0 NA intron (ENSMUSG00000085057.7, intron 3 of 5) processed_transcript-intron (ENSMUSG00000085057.7, intron 3 of 5) -3451 ENSMUSG00000099120.1 ENSMUSG00000099120 ENSMUST00000184217 Gm27193 transcribed_processed_pseudogene Interval_77001 chr17 85533640 85533982 + 0 NA Intergenic Intergenic 8892 ENSMUSG00000117344.1 ENSMUSG00000117344 ENSMUST00000234073 Gm5231 processed_pseudogene Interval_134263 chr6 24068926 24069553 + 0 NA Intergenic Intergenic 39332 ENSMUSG00000029700.11 ENSMUSG00000029700 ENSMUST00000176692 Slc13a1 protein_coding Interval_66309 chr16 33049866 33050277 + 0 NA promoter-TSS (ENSMUSG00000035578.16) protein_coding-promoter-TSS (ENSMUSG00000035578.16) -201 ENSMUSG00000035578.16 ENSMUSG00000035578 ENSMUST00000126793 Iqcg protein_coding Interval_108656 chr3 129837923 129838497 + 0 NA intron (ENSMUSG00000058952.12, intron 2 of 3) protein_coding-intron (ENSMUSG00000058952.12, intron 1 of 13) 2326 ENSMUSG00000058952.12 ENSMUSG00000058952 ENSMUST00000077918 Cfi protein_coding Interval_93293 chr2 71731915 71732632 + 0 NA Intergenic Intergenic -5542 ENSMUSG00000087570.1 ENSMUSG00000087570 ENSMUST00000154654 Gm13647 lincRNA Interval_29059 chr11 80103620 80103820 + 0 NA intron (ENSMUSG00000017550.14, intron 1 of 2) protein_coding-intron (ENSMUSG00000017550.14, intron 6 of 22) 717 ENSMUSG00000017550.14 ENSMUSG00000017550 ENSMUST00000154168 Atad5 protein_coding Interval_95502 chr2 110374188 110374521 + 0 NA Intergenic Intergenic -11171 ENSMUSG00000074971.4 ENSMUSG00000074971 ENSMUST00000099626 Fibin protein_coding Interval_68827 chr16 87421929 87422524 + 0 NA intron (ENSMUSG00000052299.9, intron 6 of 11) protein_coding-intron (ENSMUSG00000052299.9, intron 6 of 29) -3182 ENSMUSG00000065647.1 ENSMUSG00000065647 ENSMUST00000083713 Gm25896 snoRNA Interval_153344 chr7 143775876 143776695 + 0 NA Intergenic Intergenic -1172 ENSMUSG00000109421.1 ENSMUSG00000109421 ENSMUST00000207091 Gm44998 TEC Interval_75838 chr17 71721662 71722128 + 0 NA intron (ENSMUSG00000045761.16, intron 18 of 19) protein_coding-intron (ENSMUSG00000045761.16, intron 18 of 19) -4078 ENSMUSG00000089779.1 ENSMUSG00000089779 ENSMUST00000161407 Gm15641 antisense Interval_28923 chr11 79290652 79291213 + 0 NA Intergenic Intergenic 5974 ENSMUSG00000055072.2 ENSMUSG00000055072 ENSMUST00000068448 Gm9964 TEC Interval_106269 chr3 95032166 95032974 + 0 NA TTS (ENSMUSG00000005625.15) protein_coding-TTS (ENSMUSG00000005625.15) 1346 ENSMUSG00000005625.15 ENSMUSG00000005625 ENSMUST00000143688 Psmd4 protein_coding Interval_435 chr1 5232042 5233484 + 0 NA Intergenic Intergenic 44574 ENSMUSG00000104352.1 ENSMUSG00000104352 ENSMUST00000193351 Gm7182 processed_pseudogene Interval_35600 chr12 25183777 25184150 + 0 NA intron (ENSMUSG00000114033.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000114033.1, intron 1 of 1) 2195 ENSMUSG00000114033.1 ENSMUSG00000114033 ENSMUST00000222804 Gm47705 lincRNA Interval_39668 chr12 91942128 91944582 + 0 NA Intergenic Intergenic 26222 ENSMUSG00000098159.1 ENSMUSG00000098159 ENSMUST00000183260 Gm21614 processed_pseudogene Interval_142471 chr6 142665463 142665672 + 0 NA intron (ENSMUSG00000030249.15, intron 14 of 38) protein_coding-intron (ENSMUSG00000030249.15, intron 14 of 39) 36706 ENSMUSG00000030249.15 ENSMUSG00000030249 ENSMUST00000204870 Abcc9 protein_coding Interval_127632 chr5 105973967 105974938 + 0 NA Intergenic Intergenic 6730 ENSMUSG00000105129.1 ENSMUSG00000105129 ENSMUST00000199576 Gm19566 processed_pseudogene Interval_53403 chr14 56997949 56999195 + 0 NA Intergenic Intergenic -16562 ENSMUSG00000096144.3 ENSMUSG00000096144 ENSMUST00000225045 B020004C17Rik lincRNA Interval_31294 chr11 99391690 99392543 + 0 NA Intergenic Intergenic 4776 ENSMUSG00000087692.1 ENSMUSG00000087692 ENSMUST00000153599 Gm11940 antisense Interval_32133 chr11 105456122 105457112 + 0 NA exon (ENSMUSG00000078627.9, exon 1 of 12) protein_coding-exon (ENSMUSG00000078627.9, exon 1 of 12) 22172 ENSMUSG00000086089.1 ENSMUSG00000086089 ENSMUST00000155987 Gm11640 antisense Interval_65652 chr16 24833626 24833876 + 0 NA intron (ENSMUSG00000033306.15, intron 3 of 7) protein_coding-intron (ENSMUSG00000033306.15, intron 8 of 12) 5896 ENSMUSG00000065494.1 ENSMUSG00000065494 ENSMUST00000083560 Mir28a miRNA Interval_14932 chr10 41257027 41257789 + 0 NA intron (ENSMUSG00000038417.4, intron 11 of 22) protein_coding-intron (ENSMUSG00000038417.4, intron 11 of 22) 41363 ENSMUSG00000093933.1 ENSMUSG00000093933 ENSMUST00000104332 Gm25526 snoRNA Interval_46427 chr13 65175716 65176938 + 0 NA TTS (ENSMUSG00000032999.10) protein_coding-TTS (ENSMUSG00000032999.10) 18069 ENSMUSG00000089161.1 ENSMUSG00000089161 ENSMUST00000158536 Gm24130 snoRNA Interval_143310 chr7 5092999 5093447 + 0 NA TTS (ENSMUSG00000035203.16) protein_coding-TTS (ENSMUSG00000035203.16) 9468 ENSMUSG00000035203.16 ENSMUSG00000035203 ENSMUST00000155436 Epn1 protein_coding Interval_94636 chr2 92903925 92905042 + 0 NA intron (ENSMUSG00000086980.1, intron 1 of 1) processed_transcript-intron (ENSMUSG00000086980.1, intron 1 of 1) 9180 ENSMUSG00000086980.1 ENSMUSG00000086980 ENSMUST00000123263 Gm13791 processed_transcript Interval_75339 chr17 65956228 65957681 + 0 NA Intergenic Intergenic -5817 ENSMUSG00000024098.6 ENSMUSG00000024098 ENSMUST00000233855 Twsg1 protein_coding Interval_17655 chr10 78525048 78526308 + 0 NA promoter-TSS (ENSMUSG00000099247.1) miRNA-promoter-TSS (ENSMUSG00000099247.1) -311 ENSMUSG00000099247.1 ENSMUSG00000099247 ENSMUST00000184078 Gm27541 miRNA Interval_172320 chrX 12960091 12960331 + 0 NA Intergenic Intergenic -15245 ENSMUSG00000083751.1 ENSMUSG00000083751 ENSMUST00000120045 Gm14534 processed_pseudogene Interval_50480 chr14 13948120 13948856 + 0 NA TTS (ENSMUSG00000053453.9) protein_coding-TTS (ENSMUSG00000053453.9) 9143 ENSMUSG00000053453.9 ENSMUSG00000053453 ENSMUST00000226008 Thoc7 protein_coding Interval_152954 chr7 140029021 140030327 + 0 NA TTS (ENSMUSG00000025474.9) protein_coding-TTS (ENSMUSG00000025474.9) -6731 ENSMUSG00000025470.11 ENSMUSG00000025470 ENSMUST00000210936 Zfp511 protein_coding Interval_27326 chr11 66384163 66384386 + 0 NA intron (ENSMUSG00000053930.13, intron 1 of 1) protein_coding-intron (ENSMUSG00000053930.13, intron 2 of 4) 118540 ENSMUSG00000053930.13 ENSMUSG00000053930 ENSMUST00000134562 Shisa6 protein_coding Interval_87073 chr19 45971245 45971520 + 0 NA intron (ENSMUSG00000039901.10, intron 5 of 20) protein_coding-intron (ENSMUSG00000039901.10, intron 5 of 25) -26823 ENSMUSG00000097690.2 ENSMUSG00000097690 ENSMUST00000236194 4930505N22Rik bidirectional_promoter_lncRNA Interval_14134 chr10 27986797 27987565 + 0 NA Intergenic Intergenic 50817 ENSMUSG00000064208.6 ENSMUSG00000064208 ENSMUST00000077776 Gm10145 processed_pseudogene Interval_132011 chr5 142258617 142259075 + 0 NA Intergenic Intergenic -24260 ENSMUSG00000097947.1 ENSMUSG00000097947 ENSMUST00000182990 Gm26970 processed_pseudogene Interval_37128 chr12 58713204 58713686 + 0 NA Intergenic Intergenic -50461 ENSMUSG00000112487.1 ENSMUSG00000112487 ENSMUST00000219517 Gm18873 processed_pseudogene Interval_112062 chr4 33894172 33894441 + 0 NA Intergenic Intergenic -30287 ENSMUSG00000044288.6 ENSMUSG00000044288 ENSMUST00000084736 Cnr1 protein_coding Interval_95508 chr2 110702531 110703166 + 0 NA intron (ENSMUSG00000074968.11, intron 14 of 17) protein_coding-intron (ENSMUSG00000074968.11, intron 14 of 26) -18763 ENSMUSG00000050808.13 ENSMUSG00000050808 ENSMUST00000090332 Muc15 protein_coding Interval_92294 chr2 58480485 58481066 + 0 NA intron (ENSMUSG00000026836.15, intron 2 of 10) protein_coding-intron (ENSMUSG00000026836.15, intron 3 of 10) 10659 ENSMUSG00000091922.1 ENSMUSG00000091922 ENSMUST00000167423 Gm17409 TEC Interval_96326 chr2 121632393 121633442 + 0 NA intron (ENSMUSG00000027238.17, intron 1 of 7) protein_coding-intron (ENSMUSG00000027238.17, intron 1 of 13) 68808 ENSMUSG00000081264.1 ENSMUSG00000081264 ENSMUST00000117683 Gm14021 processed_pseudogene Interval_21091 chr10 126168444 126170159 + 0 NA Intergenic Intergenic 17022 ENSMUSG00000112632.1 ENSMUSG00000112632 ENSMUST00000218265 Gm4510 processed_pseudogene Interval_97409 chr2 135873467 135873957 + 0 NA intron (ENSMUSG00000039943.16, intron 2 of 36) protein_coding-intron (ENSMUSG00000039943.16, intron 1 of 35) -60785 ENSMUSG00000086928.1 ENSMUSG00000086928 ENSMUST00000140949 Gm14210 lincRNA Interval_29611 chr11 85381930 85382619 + 0 NA intron (ENSMUSG00000059439.15, intron 5 of 26) protein_coding-intron (ENSMUSG00000059439.15, intron 5 of 24) 70110 ENSMUSG00000020525.17 ENSMUSG00000020525 ENSMUST00000127717 Ppm1d protein_coding Interval_6521 chr1 114134564 114134752 + 0 NA Intergenic Intergenic -170524 ENSMUSG00000097648.1 ENSMUSG00000097648 ENSMUST00000180837 9330185C12Rik lincRNA Interval_125463 chr5 67355574 67355954 + 0 NA TTS (ENSMUSG00000029221.15) protein_coding-TTS (ENSMUSG00000029221.15) -9741 ENSMUSG00000107266.1 ENSMUSG00000107266 ENSMUST00000202864 Gm43698 lincRNA Interval_173324 chrX 79650777 79651797 + 0 NA intron (ENSMUSG00000046942.17, intron 1 of 3) protein_coding-intron (ENSMUSG00000046942.17, intron 1 of 3) -15705 ENSMUSG00000046942.17 ENSMUSG00000046942 ENSMUST00000052283 Mageb16 protein_coding Interval_163952 chr9 29610954 29612679 + 0 NA intron (ENSMUSG00000059974.10, intron 1 of 2) protein_coding-intron (ENSMUSG00000059974.10, intron 1 of 7) -19306 ENSMUSG00000085638.1 ENSMUSG00000085638 ENSMUST00000141752 Gm15521 sense_intronic Interval_46698 chr13 69475646 69475840 + 0 NA Intergenic Intergenic -38257 ENSMUSG00000113486.1 ENSMUSG00000113486 ENSMUST00000221578 Gm48676 processed_pseudogene Interval_170120 chr9 104934298 104934507 + 0 NA intron (ENSMUSG00000032564.16, intron 7 of 12) protein_coding-intron (ENSMUSG00000032564.16, intron 7 of 15) -60514 ENSMUSG00000088204.1 ENSMUSG00000088204 ENSMUST00000157579 Gm23391 miRNA Interval_165986 chr9 55215256 55217373 + 0 NA intron (ENSMUSG00000032309.15, intron 4 of 6) protein_coding-intron (ENSMUSG00000032309.15, intron 4 of 6) 7328 ENSMUSG00000032309.15 ENSMUSG00000032309 ENSMUST00000133795 Fbxo22 protein_coding Interval_143031 chr6 148734008 148734469 + 0 NA Intergenic Intergenic 32240 ENSMUSG00000107405.1 ENSMUSG00000107405 ENSMUST00000203917 Gm44115 lincRNA Interval_130942 chr5 134175732 134176938 + 0 NA promoter-TSS (ENSMUSG00000104195.1) TEC-promoter-TSS (ENSMUSG00000104195.1) -11 ENSMUSG00000104195.1 ENSMUSG00000104195 ENSMUST00000192229 B230377A18Rik TEC Interval_64326 chr16 10521016 10521692 + 0 NA intron (ENSMUSG00000022504.10, intron 16 of 19) protein_coding-intron (ENSMUSG00000022504.10, intron 15 of 18) 21700 ENSMUSG00000038055.12 ENSMUSG00000038055 ENSMUST00000038281 Dexi protein_coding Interval_53916 chr14 63378180 63378375 + 0 NA intron (ENSMUSG00000014453.4, intron 10 of 12) protein_coding-intron (ENSMUSG00000014453.4, intron 10 of 12) -1859 ENSMUSG00000014453.4 ENSMUSG00000014453 ENSMUST00000224965 Blk protein_coding Interval_38444 chr12 79068301 79068538 + 0 NA exon (ENSMUSG00000060716.7, exon 16 of 29) protein_coding-exon (ENSMUSG00000060716.7, exon 16 of 29) 21226 ENSMUSG00000021120.11 ENSMUSG00000021120 ENSMUST00000217979 Pigh protein_coding Interval_7432 chr1 131279912 131280970 + 0 NA promoter-TSS (ENSMUSG00000042349.13) protein_coding-promoter-TSS (ENSMUSG00000042349.13) -9897 ENSMUSG00000042349.13 ENSMUSG00000042349 ENSMUST00000159195 Ikbke protein_coding Interval_148469 chr7 81515972 81516751 + 0 NA Intergenic Intergenic -7189 ENSMUSG00000097277.7 ENSMUSG00000097277 ENSMUST00000181492 2900076A07Rik lincRNA Interval_33975 chr11 119783944 119784131 + 0 NA intron (ENSMUSG00000025583.15, intron 7 of 32) protein_coding-intron (ENSMUSG00000025583.15, intron 7 of 33) 37636 ENSMUSG00000088670.1 ENSMUSG00000088670 ENSMUST00000158045 Gm23663 snoRNA Interval_13167 chr10 12749747 12750069 + 0 NA intron (ENSMUSG00000019820.11, intron 6 of 17) protein_coding-intron (ENSMUSG00000019820.11, intron 5 of 73) 44066 ENSMUSG00000088516.1 ENSMUSG00000088516 ENSMUST00000157891 Gm23044 snRNA Interval_141013 chr6 124378067 124378736 + 0 NA Intergenic Intergenic 5759 ENSMUSG00000108026.1 ENSMUSG00000108026 ENSMUST00000203845 Gm44007 TEC Interval_47284 chr13 80705142 80706357 + 0 NA Intergenic Intergenic 179775 ENSMUSG00000089827.1 ENSMUSG00000089827 ENSMUST00000161006 1700023H06Rik processed_transcript Interval_78910 chr18 21442538 21442827 + 0 NA Intergenic Intergenic 51417 ENSMUSG00000117386.1 ENSMUSG00000117386 ENSMUST00000234227 Gm4837 processed_pseudogene Interval_129112 chr5 117472748 117473211 + 0 NA intron (ENSMUSG00000061578.8, intron 1 of 20) protein_coding-intron (ENSMUSG00000061578.8, intron 1 of 3) -47720 ENSMUSG00000107199.1 ENSMUSG00000107199 ENSMUST00000201553 Gm42550 TEC Interval_112391 chr4 41018944 41019221 + 0 NA intron (ENSMUSG00000028423.15, intron 4 of 5) protein_coding-intron (ENSMUSG00000028423.15, intron 19 of 23) 16572 ENSMUSG00000028423.15 ENSMUSG00000028423 ENSMUST00000131305 Nfx1 protein_coding Interval_128766 chr5 115144247 115145955 + 0 NA exon (ENSMUSG00000048578.11, exon 5 of 5) protein_coding-exon (ENSMUSG00000048578.11, exon 5 of 5) 5945 ENSMUSG00000048578.11 ENSMUSG00000048578 ENSMUST00000124678 Mlec protein_coding Interval_69189 chr16 91219822 91223019 + 0 NA TTS (ENSMUSG00000116882.1) TEC-TTS (ENSMUSG00000116882.1) 1506 ENSMUSG00000116882.1 ENSMUSG00000116882 ENSMUST00000231709 Gm49614 TEC Interval_119894 chr4 140723545 140724438 + 0 NA TTS (ENSMUSG00000040945.13) protein_coding-TTS (ENSMUSG00000040945.13) 6948 ENSMUSG00000093071.1 ENSMUSG00000093071 ENSMUST00000175330 Gm25951 miRNA Interval_71412 chr17 23600703 23601768 + 0 NA intron (ENSMUSG00000023902.18, intron 1 of 6) protein_coding-intron (ENSMUSG00000023902.18, intron 1 of 5) 373 ENSMUSG00000023902.18 ENSMUSG00000023902 ENSMUST00000133749 Zscan10 protein_coding Interval_101526 chr3 3961260 3962336 + 0 NA Intergenic Intergenic 22654 ENSMUSG00000103224.1 ENSMUSG00000103224 ENSMUST00000195017 Gm2077 processed_pseudogene Interval_73735 chr17 43076151 43077996 + 0 NA intron (ENSMUSG00000023915.5, intron 4 of 5) protein_coding-intron (ENSMUSG00000023915.5, intron 4 of 5) 60505 ENSMUSG00000023915.5 ENSMUSG00000023915 ENSMUST00000233482 Tnfrsf21 protein_coding Interval_46343 chr13 64092170 64093747 + 0 NA Intergenic Intergenic -3757 ENSMUSG00000033122.14 ENSMUSG00000033122 ENSMUST00000222810 Hsd17b3 protein_coding Interval_76020 chr17 74416623 74417227 + 0 NA intron (ENSMUSG00000024069.14, intron 11 of 12) protein_coding-intron (ENSMUSG00000024069.14, intron 11 of 13) 21280 ENSMUSG00000024069.14 ENSMUSG00000024069 ENSMUST00000233180 Slc30a6 protein_coding Interval_98396 chr2 152047261 152049916 + 0 NA Intergenic Intergenic 28220 ENSMUSG00000085946.1 ENSMUSG00000085946 ENSMUST00000147463 AA387200 antisense Interval_54998 chr14 76753876 76754069 + 0 NA Intergenic Intergenic -6159 ENSMUSG00000115709.1 ENSMUSG00000115709 ENSMUST00000228541 4930431P22Rik lincRNA Interval_6267 chr1 105012055 105013886 + 0 NA Intergenic Intergenic -100637 ENSMUSG00000089866.1 ENSMUSG00000089866 ENSMUST00000159213 Gm15699 antisense Interval_90925 chr2 33500431 33501217 + 0 NA intron (ENSMUSG00000086939.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000086939.1, intron 1 of 1) 11042 ENSMUSG00000086939.1 ENSMUSG00000086939 ENSMUST00000134014 Gm13530 lincRNA Interval_17006 chr10 70384571 70385152 + 0 NA Intergenic Intergenic 30720 ENSMUSG00000112884.1 ENSMUSG00000112884 ENSMUST00000219437 Gm47946 lincRNA Interval_109693 chr3 146028391 146028787 + 0 NA Intergenic Intergenic -9856 ENSMUSG00000105146.1 ENSMUSG00000105146 ENSMUST00000196412 Gm35409 lincRNA Interval_9007 chr1 153052007 153052766 + 0 NA intron (ENSMUSG00000042751.14, intron 1 of 1) protein_coding-intron (ENSMUSG00000042751.14, intron 1 of 10) 37121 ENSMUSG00000099969.1 ENSMUSG00000099969 ENSMUST00000190117 Gm28960 antisense Interval_51806 chr14 32331815 32332512 + 0 NA intron (ENSMUSG00000021913.8, intron 4 of 23) protein_coding-intron (ENSMUSG00000021913.8, intron 4 of 23) 10144 ENSMUSG00000021913.8 ENSMUSG00000021913 ENSMUST00000228286 Ogdhl protein_coding Interval_103275 chr3 37747393 37748265 + 0 NA Intergenic Intergenic 13099 ENSMUSG00000097304.1 ENSMUSG00000097304 ENSMUST00000181857 Rpl31-ps15 processed_pseudogene Interval_56616 chr14 120875009 120876306 + 0 NA Intergenic Intergenic -40190 ENSMUSG00000030662.10 ENSMUSG00000030662 ENSMUST00000228277 Ipo5 protein_coding Interval_117680 chr4 125516636 125517103 + 0 NA intron (ENSMUSG00000001985.9, intron 1 of 15) protein_coding-intron (ENSMUSG00000001985.9, intron 1 of 15) 12120 ENSMUSG00000094403.1 ENSMUSG00000094403 ENSMUST00000102081 Mir692-2 miRNA Interval_79830 chr18 35437043 35437527 + 0 NA intron (ENSMUSG00000024357.10, intron 2 of 3) protein_coding-intron (ENSMUSG00000024357.10, intron 2 of 9) -51819 ENSMUSG00000117731.1 ENSMUSG00000117731 ENSMUST00000237123 Gm50145 antisense Interval_28778 chr11 78271580 78271797 + 0 NA promoter-TSS (ENSMUSG00000010277.7) protein_coding-promoter-TSS (ENSMUSG00000010277.7) 7378 ENSMUSG00000086586.1 ENSMUSG00000086586 ENSMUST00000127017 Gm11192 antisense Interval_43117 chr13 24306145 24306339 + 0 NA Intergenic Intergenic 10610 ENSMUSG00000089580.1 ENSMUSG00000089580 ENSMUST00000158955 Gm23340 snoRNA Interval_41220 chr12 111900909 111901463 + 0 NA intron (ENSMUSG00000021285.15, intron 1 of 3) protein_coding-intron (ENSMUSG00000021285.15, intron 1 of 16) 6433 ENSMUSG00000021285.15 ENSMUSG00000021285 ENSMUST00000220927 Ppp1r13b protein_coding Interval_100947 chr2 173566345 173566536 + 0 NA Intergenic Intergenic 11840 ENSMUSG00000027517.14 ENSMUSG00000027517 ENSMUST00000147693 Ankrd60 protein_coding Interval_164956 chr9 43376799 43376995 + 0 NA exon (ENSMUSG00000110823.1, exon 3 of 4) lincRNA-exon (ENSMUSG00000110823.1, exon 3 of 4) 272 ENSMUSG00000110823.1 ENSMUSG00000110823 ENSMUST00000216190 Gm36799 lincRNA Interval_67971 chr16 62257900 62258135 + 0 NA Intergenic Intergenic 160556 ENSMUSG00000116619.1 ENSMUSG00000116619 ENSMUST00000232249 Gm49615 lincRNA Interval_18954 chr10 93360269 93360972 + 0 NA Intergenic Intergenic 25227 ENSMUSG00000110647.2 ENSMUSG00000110647 ENSMUST00000212186 Gm17745 lincRNA Interval_117112 chr4 119636591 119637606 + 0 NA promoter-TSS (ENSMUSG00000023247.2) protein_coding-promoter-TSS (ENSMUSG00000023247.2) -606 ENSMUSG00000023247.2 ENSMUSG00000023247 ENSMUST00000024015 Guca2a protein_coding Interval_171011 chr9 113707069 113708685 + 0 NA intron (ENSMUSG00000032504.15, intron 1 of 17) protein_coding-intron (ENSMUSG00000032504.15, intron 1 of 17) -10300 ENSMUSG00000032504.15 ENSMUSG00000032504 ENSMUST00000156425 Pdcd6ip protein_coding Interval_148595 chr7 82938393 82938821 + 0 NA intron (ENSMUSG00000109106.1, intron 2 of 2) lincRNA-intron (ENSMUSG00000109106.1, intron 2 of 2) 2081 ENSMUSG00000109106.1 ENSMUSG00000109106 ENSMUST00000209078 4933430H16Rik lincRNA Interval_73864 chr17 44791847 44792226 + 0 NA intron (ENSMUSG00000038954.14, intron 2 of 2) protein_coding-intron (ENSMUSG00000038954.14, intron 2 of 11) 14711 ENSMUSG00000038954.14 ENSMUSG00000038954 ENSMUST00000129416 Supt3 protein_coding Interval_164320 chr9 35316887 35318993 + 0 NA Intergenic Intergenic -10341 ENSMUSG00000111059.1 ENSMUSG00000111059 ENSMUST00000214038 Gm33838 lincRNA Interval_165351 chr9 46511448 46512095 + 0 NA Intergenic Intergenic -6698 ENSMUSG00000111115.1 ENSMUSG00000111115 ENSMUST00000214085 Gm47144 lincRNA Interval_130655 chr5 129506880 129507672 + 0 NA intron (ENSMUSG00000029439.14, intron 2 of 2) protein_coding-intron (ENSMUSG00000029439.14, intron 4 of 17) 2935 ENSMUSG00000029439.14 ENSMUSG00000029439 ENSMUST00000196873 Sfswap protein_coding Interval_47933 chr13 94459066 94459349 + 0 NA intron (ENSMUSG00000021686.6, intron 14 of 26) protein_coding-intron (ENSMUSG00000021686.6, intron 14 of 26) -13656 ENSMUSG00000021686.6 ENSMUSG00000021686 ENSMUST00000220505 Ap3b1 protein_coding Interval_16793 chr10 68202625 68202845 + 0 NA intron (ENSMUSG00000019947.10, intron 3 of 9) protein_coding-intron (ENSMUSG00000019947.10, intron 3 of 10) 76005 ENSMUSG00000019947.10 ENSMUSG00000019947 ENSMUST00000218425 Arid5b protein_coding Interval_113814 chr4 59000752 59001094 + 0 NA intron (ENSMUSG00000070972.13, intron 2 of 3) protein_coding-intron (ENSMUSG00000070972.13, intron 2 of 3) -2270 ENSMUSG00000070972.13 ENSMUSG00000070972 ENSMUST00000153467 Dnajc25 protein_coding Interval_21311 chr10 127890278 127890794 + 0 NA Intergenic Intergenic -2206 ENSMUSG00000040134.8 ENSMUSG00000040134 ENSMUST00000130374 Rdh7 protein_coding Interval_128050 chr5 110528660 110529681 + 0 NA Intergenic Intergenic 14226 ENSMUSG00000048215.14 ENSMUSG00000048215 ENSMUST00000129007 A630023P12Rik lincRNA Interval_78180 chr18 9865799 9866559 + 0 NA intron (ENSMUSG00000036103.9, intron 7 of 9) protein_coding-intron (ENSMUSG00000036103.9, intron 8 of 10) -39060 ENSMUSG00000092816.1 ENSMUSG00000092816 ENSMUST00000175075 Gm23637 miRNA Interval_73499 chr17 38060233 38060604 + 0 NA promoter-TSS (ENSMUSG00000081724.4) protein_coding-promoter-TSS (ENSMUSG00000081724.4) -339 ENSMUSG00000081724.4 ENSMUSG00000081724 ENSMUST00000122318 Olfr129 protein_coding Interval_61044 chr15 78931510 78931919 + 0 NA Intergenic Intergenic -3472 ENSMUSG00000033099.10 ENSMUSG00000033099 ENSMUST00000123013 Nol12 protein_coding Interval_166736 chr9 62340794 62341879 + 0 NA promoter-TSS (ENSMUSG00000032249.14) protein_coding-promoter-TSS (ENSMUSG00000032249.14) -1128 ENSMUSG00000032249.14 ENSMUSG00000032249 ENSMUST00000145679 Anp32a protein_coding Interval_135146 chr6 36857687 36859082 + 0 NA intron (ENSMUSG00000038665.15, intron 30 of 32) protein_coding-intron (ENSMUSG00000038665.15, intron 30 of 32) -48205 ENSMUSG00000029838.11 ENSMUSG00000029838 ENSMUST00000201321 Ptn protein_coding Interval_65097 chr16 19082907 19083996 + 0 NA intron (ENSMUSG00000106567.1, intron 2 of 3) antisense-intron (ENSMUSG00000106567.1, intron 2 of 3) 2049 ENSMUSG00000076934.2 ENSMUSG00000076934 ENSMUST00000103746 Iglv1 IG_V_gene Interval_74522 chr17 52865674 52865867 + 0 NA intron (ENSMUSG00000035580.10, intron 7 of 15) protein_coding-intron (ENSMUSG00000035580.10, intron 7 of 15) -84290 ENSMUSG00000035580.10 ENSMUSG00000035580 ENSMUST00000184279 Kcnh8 protein_coding Interval_149833 chr7 101895905 101897188 + 0 NA promoter-TSS (ENSMUSG00000030649.18) protein_coding-promoter-TSS (ENSMUSG00000030649.18) 9813 ENSMUSG00000078630.8 ENSMUSG00000078630 ENSMUST00000106970 Tomt protein_coding Interval_146073 chr7 43671403 43672837 + 0 NA promoter-TSS (ENSMUSG00000108783.1) lincRNA-promoter-TSS (ENSMUSG00000108783.1) 104 ENSMUSG00000038888.8 ENSMUSG00000038888 ENSMUST00000038332 Ctu1 protein_coding Interval_143059 chr6 148982560 148983796 + 0 NA Intergenic Intergenic 15862 ENSMUSG00000080536.1 ENSMUSG00000080536 ENSMUST00000116886 Gm25539 snoRNA Interval_107807 chr3 115635540 115635814 + 0 NA Intergenic Intergenic 79395 ENSMUSG00000045092.8 ENSMUSG00000045092 ENSMUST00000055676 S1pr1 protein_coding Interval_50500 chr14 14196918 14197384 + 0 NA promoter-TSS (ENSMUSG00000114909.1) processed_pseudogene-promoter-TSS (ENSMUSG00000114909.1) -155 ENSMUSG00000114909.1 ENSMUSG00000114909 ENSMUST00000225081 Csnk2a1-ps1 processed_pseudogene Interval_3010 chr1 52146497 52147032 + 0 NA intron (ENSMUSG00000101628.1, intron 26 of 33) protein_coding-intron (ENSMUSG00000026104.14, intron 15 of 24) -11434 ENSMUSG00000099569.1 ENSMUSG00000099569 ENSMUST00000185261 Gm18301 unprocessed_pseudogene Interval_9530 chr1 158669621 158670939 + 0 NA intron (ENSMUSG00000026587.15, intron 20 of 21) protein_coding-intron (ENSMUSG00000026587.15, intron 20 of 22) -115981 ENSMUSG00000103971.1 ENSMUSG00000103971 ENSMUST00000192868 Gm37679 antisense Interval_160159 chr8 106807338 106808012 + 0 NA intron (ENSMUSG00000041949.6, intron 16 of 17) protein_coding-intron (ENSMUSG00000041949.6, intron 16 of 17) -63161 ENSMUSG00000031910.14 ENSMUSG00000031910 ENSMUST00000175987 Has3 protein_coding Interval_53279 chr14 55755877 55756299 + 0 NA TTS (ENSMUSG00000019297.9) protein_coding-TTS (ENSMUSG00000019297.9) 2291 ENSMUSG00000022219.10 ENSMUSG00000022219 ENSMUST00000136270 Cideb protein_coding Interval_60437 chr15 73747679 73749968 + 0 NA exon (ENSMUSG00000059895.13, exon 1 of 4) protein_coding-exon (ENSMUSG00000059895.13, exon 1 of 4) 1105 ENSMUSG00000059895.13 ENSMUSG00000059895 ENSMUST00000053232 Ptp4a3 protein_coding Interval_32432 chr11 107516516 107518008 + 0 NA intron (ENSMUSG00000085864.1, intron 4 of 4) lincRNA-intron (ENSMUSG00000085864.1, intron 4 of 4) 9958 ENSMUSG00000085864.1 ENSMUSG00000085864 ENSMUST00000149428 C330019F10Rik lincRNA Interval_172737 chrX 48108576 48108968 + 0 NA promoter-TSS (ENSMUSG00000037005.16) protein_coding-promoter-TSS (ENSMUSG00000037005.16) -18972 ENSMUSG00000037005.16 ENSMUSG00000037005 ENSMUST00000156654 Xpnpep2 protein_coding Interval_84781 chr19 16601575 16602592 + 0 NA intron (ENSMUSG00000024697.4, intron 3 of 6) protein_coding-intron (ENSMUSG00000024697.4, intron 3 of 6) -29615 ENSMUSG00000118023.1 ENSMUSG00000118023 ENSMUST00000237942 Gm50363 processed_pseudogene Interval_173827 chrX 105762928 105765338 + 0 NA promoter-TSS (ENSMUSG00000031230.3) protein_coding-promoter-TSS (ENSMUSG00000031230.3) -146 ENSMUSG00000031230.3 ENSMUSG00000031230 ENSMUST00000033581 Fgf16 protein_coding Interval_25838 chr11 52062600 52062784 + 0 NA intron (ENSMUSG00000020389.19, intron 5 of 5) protein_coding-intron (ENSMUSG00000020389.19, intron 13 of 13) -23221 ENSMUSG00000084800.1 ENSMUSG00000084800 ENSMUST00000133940 Gm12205 antisense Interval_132736 chr5 147468258 147468481 + 0 NA intron (ENSMUSG00000029647.15, intron 4 of 18) protein_coding-intron (ENSMUSG00000029647.15, intron 4 of 18) 28979 ENSMUSG00000107085.1 ENSMUSG00000107085 ENSMUST00000202594 Gm42883 processed_pseudogene Interval_9883 chr1 163783603 163784028 + 0 NA intron (ENSMUSG00000026585.13, intron 2 of 20) protein_coding-intron (ENSMUSG00000026585.13, intron 2 of 19) 4232 ENSMUSG00000026585.13 ENSMUSG00000026585 ENSMUST00000027877 Kifap3 protein_coding Interval_152205 chr7 130644286 130644691 + 0 NA promoter-TSS (ENSMUSG00000030852.18) protein_coding-promoter-TSS (ENSMUSG00000030852.18) 9904 ENSMUSG00000109225.1 ENSMUSG00000109225 ENSMUST00000207466 4930513N20Rik TEC Interval_97484 chr2 137179417 137179599 + 0 NA Intergenic Intergenic -19475 ENSMUSG00000099683.1 ENSMUSG00000099683 ENSMUST00000185663 Gm28214 lincRNA Interval_112997 chr4 46688586 46689866 + 0 NA promoter-TSS (ENSMUSG00000039809.10) protein_coding-promoter-TSS (ENSMUSG00000039809.10) -39017 ENSMUSG00000039813.14 ENSMUSG00000039813 ENSMUST00000107750 Tbc1d2 protein_coding Interval_72049 chr17 27719769 27719970 + 0 NA TTS (ENSMUSG00000024215.14) protein_coding-TTS (ENSMUSG00000024215.14) -1520 ENSMUSG00000024215.14 ENSMUSG00000024215 ENSMUST00000138970 Spdef protein_coding Interval_11613 chr1 183296103 183298192 + 0 NA promoter-TSS (ENSMUSG00000046836.13) protein_coding-promoter-TSS (ENSMUSG00000046836.13) 81 ENSMUSG00000046836.13 ENSMUSG00000046836 ENSMUST00000192829 Brox protein_coding Interval_124465 chr5 48385752 48386039 + 0 NA intron (ENSMUSG00000029089.8, intron 5 of 5) protein_coding-intron (ENSMUSG00000029089.8, intron 8 of 8) 13462 ENSMUSG00000029089.8 ENSMUSG00000029089 ENSMUST00000199818 5730480H06Rik protein_coding Interval_127003 chr5 99431241 99431447 + 0 NA intron (ENSMUSG00000089809.9, intron 3 of 16) protein_coding-intron (ENSMUSG00000089809.9, intron 2 of 3) -77045 ENSMUSG00000104753.1 ENSMUSG00000104753 ENSMUST00000196037 Gm35172 lincRNA Interval_163829 chr9 26977142 26977913 + 0 NA intron (ENSMUSG00000031969.16, intron 1 of 1) protein_coding-intron (ENSMUSG00000031969.16, intron 10 of 10) -14968 ENSMUSG00000111151.1 ENSMUSG00000111151 ENSMUST00000215231 Gm5120 processed_pseudogene Interval_57886 chr15 24724674 24725017 + 0 NA promoter-TSS (ENSMUSG00000115607.1) processed_pseudogene-promoter-TSS (ENSMUSG00000115607.1) -52 ENSMUSG00000115607.1 ENSMUSG00000115607 ENSMUST00000226163 Gm2803 processed_pseudogene Interval_95295 chr2 105869466 105870294 + 0 NA intron (ENSMUSG00000027167.11, intron 3 of 3) protein_coding-intron (ENSMUSG00000027167.11, intron 2 of 9) -34758 ENSMUSG00000042670.5 ENSMUSG00000042670 ENSMUST00000037499 Immp1l protein_coding Interval_25565 chr11 49805983 49806763 + 0 NA exon (ENSMUSG00000020363.6, exon 2 of 2) protein_coding-exon (ENSMUSG00000020363.6, exon 2 of 2) 12195 ENSMUSG00000020363.6 ENSMUSG00000020363 ENSMUST00000020629 Gfpt2 protein_coding Interval_169655 chr9 99770751 99771205 + 0 NA Intergenic Intergenic -20461 ENSMUSG00000077215.1 ENSMUSG00000077215 ENSMUST00000104027 Gm23949 snoRNA Interval_107125 chr3 103737114 103738705 + 0 NA promoter-TSS (ENSMUSG00000027848.12) protein_coding-promoter-TSS (ENSMUSG00000027848.12) -1457 ENSMUSG00000078620.1 ENSMUSG00000078620 ENSMUST00000106852 Gm10964 protein_coding Interval_172999 chrX 60891928 60894586 + 0 NA promoter-TSS (ENSMUSG00000087565.1) antisense-promoter-TSS (ENSMUSG00000087565.1) 173 ENSMUSG00000045179.9 ENSMUSG00000045179 ENSMUST00000135107 Sox3 protein_coding Interval_148591 chr7 82880635 82880888 + 0 NA Intergenic Intergenic 13428 ENSMUSG00000057706.7 ENSMUSG00000057706 ENSMUST00000082237 Mex3b protein_coding Interval_111771 chr4 28321262 28321610 + 0 NA Intergenic Intergenic -32347 ENSMUSG00000082703.1 ENSMUSG00000082703 ENSMUST00000118918 Gm11907 processed_pseudogene Interval_49477 chr13 112311184 112311512 + 0 NA intron (ENSMUSG00000049985.15, intron 1 of 5) protein_coding-intron (ENSMUSG00000049985.15, intron 1 of 10) 20227 ENSMUSG00000088991.1 ENSMUSG00000088991 ENSMUST00000158366 Gm22768 snRNA Interval_71426 chr17 23677005 23677595 + 0 NA promoter-TSS (ENSMUSG00000023905.15) protein_coding-promoter-TSS (ENSMUSG00000023905.15) 127 ENSMUSG00000023905.15 ENSMUSG00000023905 ENSMUST00000233754 Tnfrsf12a protein_coding Interval_150242 chr7 108926289 108926524 + 0 NA intron (ENSMUSG00000049709.4, intron 2 of 2) protein_coding-intron (ENSMUSG00000049709.4, intron 2 of 2) 3772 ENSMUSG00000049709.4 ENSMUSG00000049709 ENSMUST00000055745 Nlrp10 protein_coding Interval_119331 chr4 136906975 136907298 + 0 NA Intergenic Intergenic -8333 ENSMUSG00000036887.5 ENSMUSG00000036887 ENSMUST00000046285 C1qa protein_coding Interval_140112 chr6 114315087 114316249 + 0 NA TTS (ENSMUSG00000030310.10) protein_coding-TTS (ENSMUSG00000030310.10) 32878 ENSMUSG00000030310.10 ENSMUSG00000030310 ENSMUST00000204540 Slc6a1 protein_coding Interval_39949 chr12 100050457 100050697 + 0 NA intron (ENSMUSG00000045404.16, intron 2 of 2) protein_coding-intron (ENSMUSG00000045404.16, intron 2 of 2) 30240 ENSMUSG00000112999.1 ENSMUSG00000112999 ENSMUST00000221663 9530050K03Rik processed_pseudogene Interval_47477 chr13 85091272 85091778 + 0 NA Intergenic Intergenic -2810 ENSMUSG00000114614.1 ENSMUSG00000114614 ENSMUST00000224450 Gm47745 processed_pseudogene Interval_148513 chr7 81991521 81993213 + 0 NA promoter-TSS (ENSMUSG00000025105.10) protein_coding-promoter-TSS (ENSMUSG00000025105.10) -60 ENSMUSG00000025105.10 ENSMUSG00000025105 ENSMUST00000026096 Bnc1 protein_coding Interval_122272 chr5 20866325 20866651 + 0 NA intron (ENSMUSG00000039987.15, intron 1 of 5) protein_coding-intron (ENSMUSG00000039987.15, intron 1 of 17) 15557 ENSMUSG00000039987.15 ENSMUSG00000039987 ENSMUST00000156044 Phtf2 protein_coding Interval_45687 chr13 56930666 56930873 + 0 NA TTS (ENSMUSG00000077279.1) snoRNA-TTS (ENSMUSG00000077279.1) 179 ENSMUSG00000077279.1 ENSMUSG00000077279 ENSMUST00000104091 Gm22777 snoRNA Interval_61986 chr15 85660733 85661771 + 0 NA intron (ENSMUSG00000116305.1, intron 1 of 6) lincRNA-intron (ENSMUSG00000116004.1, intron 1 of 1) 7636 ENSMUSG00000116305.1 ENSMUSG00000116305 ENSMUST00000230286 Lncppara processed_transcript Interval_14463 chr10 34095588 34096991 + 0 NA exon (ENSMUSG00000049872.8, exon 1 of 2) protein_coding-exon (ENSMUSG00000049872.8, exon 1 of 2) 230 ENSMUSG00000049872.8 ENSMUSG00000049872 ENSMUST00000069125 Calhm5 protein_coding Interval_20106 chr10 114800411 114802661 + 0 NA promoter-TSS (ENSMUSG00000050663.8) protein_coding-promoter-TSS (ENSMUSG00000050663.8) -190 ENSMUSG00000084865.1 ENSMUSG00000084865 ENSMUST00000139331 Gm15723 antisense Interval_109399 chr3 141811197 141811972 + 0 NA intron (ENSMUSG00000059921.15, intron 13 of 17) protein_coding-intron (ENSMUSG00000059921.15, intron 13 of 16) 119924 ENSMUSG00000052430.15 ENSMUSG00000052430 ENSMUST00000106230 Bmpr1b protein_coding Interval_44724 chr13 47843270 47843478 + 0 NA Intergenic Intergenic -67061 ENSMUSG00000114959.1 ENSMUSG00000114959 ENSMUST00000223677 G630093K05Rik lincRNA Interval_61159 chr15 79563995 79564216 + 0 NA intron (ENSMUSG00000022429.11, intron 3 of 3) protein_coding-intron (ENSMUSG00000022429.11, intron 13 of 13) -17550 ENSMUSG00000055065.7 ENSMUSG00000055065 ENSMUST00000229431 Ddx17 protein_coding Interval_64617 chr16 13698853 13699491 + 0 NA exon (ENSMUSG00000022684.15, exon 6 of 6) protein_coding-exon (ENSMUSG00000022684.15, exon 6 of 6) 27185 ENSMUSG00000022684.15 ENSMUSG00000022684 ENSMUST00000154568 Bfar protein_coding Interval_2655 chr1 42968584 42968839 + 0 NA intron (ENSMUSG00000041907.9, intron 1 of 1) protein_coding-intron (ENSMUSG00000041907.9, intron 1 of 1) 15839 ENSMUSG00000041907.9 ENSMUSG00000041907 ENSMUST00000114761 Gpr45 protein_coding Interval_116571 chr4 115791433 115791641 + 0 NA intron (ENSMUSG00000028710.18, intron 4 of 8) protein_coding-intron (ENSMUSG00000028710.18, intron 4 of 8) 6553 ENSMUSG00000028710.18 ENSMUSG00000028710 ENSMUST00000137401 Atpaf1 protein_coding Interval_105044 chr3 80078174 80078386 + 0 NA intron (ENSMUSG00000103181.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000103181.1, intron 1 of 2) 10879 ENSMUSG00000103193.1 ENSMUSG00000103193 ENSMUST00000193232 Gm19066 processed_pseudogene Interval_67181 chr16 44178697 44179267 + 0 NA intron (ENSMUSG00000068284.14, intron 1 of 7) protein_coding-intron (ENSMUSG00000068284.14, intron 1 of 6) 5585 ENSMUSG00000068284.14 ENSMUSG00000068284 ENSMUST00000169582 Usf3 protein_coding Interval_38149 chr12 75973155 75973722 + 0 NA exon (ENSMUSG00000063450.14, exon 51 of 116) protein_coding-exon (ENSMUSG00000063450.14, exon 51 of 116) 64335 ENSMUSG00000092922.1 ENSMUSG00000092922 ENSMUST00000175181 Mir5101 miRNA Interval_135967 chr6 49141003 49141414 + 0 NA intron (ENSMUSG00000029814.10, intron 3 of 9) protein_coding-intron (ENSMUSG00000029814.10, intron 3 of 14) -31551 ENSMUSG00000107727.1 ENSMUSG00000107727 ENSMUST00000203553 Gm18010 processed_pseudogene Interval_140722 chr6 120861808 120862350 + 0 NA intron (ENSMUSG00000009112.4, intron 2 of 2) protein_coding-intron (ENSMUSG00000009112.4, intron 2 of 6) 25867 ENSMUSG00000009112.4 ENSMUSG00000009112 ENSMUST00000009256 Bcl2l13 protein_coding Interval_39861 chr12 99175362 99175655 + 0 NA Intergenic Intergenic -12700 ENSMUSG00000113210.1 ENSMUSG00000113210 ENSMUST00000223511 4930474N09Rik lincRNA Interval_68256 chr16 71314269 71314492 + 0 NA Intergenic Intergenic 64496 ENSMUSG00000116982.1 ENSMUSG00000116982 ENSMUST00000231541 4930567J20Rik lincRNA Interval_49426 chr13 111902610 111905803 + 0 NA Intergenic Intergenic -20029 ENSMUSG00000082433.2 ENSMUSG00000082433 ENSMUST00000122415 Gm9025 processed_pseudogene Interval_43019 chr13 23171453 23172025 + 0 NA Intergenic Intergenic 12427 ENSMUSG00000061376.2 ENSMUSG00000061376 ENSMUST00000076180 Vmn1r219 protein_coding Interval_38732 chr12 81698110 81698394 + 0 NA Intergenic Intergenic 21800 ENSMUSG00000113184.1 ENSMUSG00000113184 ENSMUST00000221438 Gm49654 lincRNA Interval_72845 chr17 32535579 32537046 + 0 NA promoter-TSS (ENSMUSG00000048440.16) protein_coding-promoter-TSS (ENSMUSG00000048440.16) -274 ENSMUSG00000048440.16 ENSMUSG00000048440 ENSMUST00000168285 Cyp4f16 protein_coding Interval_27283 chr11 65236545 65236913 + 0 NA intron (ENSMUSG00000020542.18, intron 1 of 3) protein_coding-intron (ENSMUSG00000020542.18, intron 1 of 12) -54572 ENSMUSG00000020542.18 ENSMUSG00000020542 ENSMUST00000150823 Myocd protein_coding Interval_85928 chr19 33382105 33383304 + 0 NA intron (ENSMUSG00000071573.14, intron 1 of 4) polymorphic_pseudogene-intron (ENSMUSG00000071573.14, intron 3 of 6) 9591 ENSMUSG00000071573.14 ENSMUSG00000071573 ENSMUST00000163093 Rnls polymorphic_pseudogene Interval_22805 chr11 16041019 16041303 + 0 NA Intergenic Intergenic 3368 ENSMUSG00000104323.1 ENSMUSG00000104323 ENSMUST00000193500 Gm37319 TEC Interval_90827 chr2 32854162 32854448 + 0 NA Intergenic Intergenic -7099 ENSMUSG00000026797.16 ENSMUSG00000026797 ENSMUST00000208840 Stxbp1 protein_coding Interval_117979 chr4 127436578 127436921 + 0 NA Intergenic Intergenic -27951 ENSMUSG00000079998.2 ENSMUSG00000079998 ENSMUST00000116114 Gm12947 processed_pseudogene Interval_67989 chr16 62805477 62805677 + 0 NA intron (ENSMUSG00000022911.11, intron 6 of 9) protein_coding-intron (ENSMUSG00000022911.11, intron 6 of 9) -2772 ENSMUSG00000076424.1 ENSMUSG00000076424 ENSMUST00000102469 Gm25986 miRNA Interval_111841 chr4 31825209 31827440 + 0 NA Intergenic Intergenic -159343 ENSMUSG00000028284.13 ENSMUSG00000028284 ENSMUST00000131310 Map3k7 protein_coding Interval_106578 chr3 97489115 97489901 + 0 NA Intergenic Intergenic -67488 ENSMUSG00000051392.5 ENSMUSG00000051392 ENSMUST00000060912 Olfr1402 protein_coding Interval_111979 chr4 32938764 32939233 + 0 NA intron (ENSMUSG00000040183.13, intron 1 of 15) protein_coding-intron (ENSMUSG00000040183.13, intron 1 of 14) -25890 ENSMUSG00000094344.1 ENSMUSG00000094344 ENSMUST00000180255 Gm11942 processed_pseudogene Interval_79149 chr18 25037428 25037988 + 0 NA intron (ENSMUSG00000034295.10, intron 11 of 24) protein_coding-intron (ENSMUSG00000034295.10, intron 13 of 26) 130986 ENSMUSG00000024269.11 ENSMUSG00000024269 ENSMUST00000115817 Tpgs2 protein_coding Interval_156962 chr8 62545050 62545317 + 0 NA Intergenic Intergenic 2648 ENSMUSG00000109740.1 ENSMUSG00000109740 ENSMUST00000211203 Gm7561 processed_pseudogene Interval_166606 chr9 61280829 61281978 + 0 NA intron (ENSMUSG00000111658.1, intron 3 of 4) lincRNA-intron (ENSMUSG00000111658.1, intron 3 of 4) 12406 ENSMUSG00000111658.1 ENSMUSG00000111658 ENSMUST00000213377 B930092H01Rik lincRNA Interval_139038 chr6 94466666 94467207 + 0 NA Intergenic Intergenic 17462 ENSMUSG00000107781.1 ENSMUSG00000107781 ENSMUST00000203041 Gm44315 processed_pseudogene Interval_148421 chr7 81151007 81153173 + 0 NA intron (ENSMUSG00000025726.11, intron 10 of 17) protein_coding-intron (ENSMUSG00000025726.11, intron 10 of 17) 9654 ENSMUSG00000083820.1 ENSMUSG00000083820 ENSMUST00000118488 Ndufs6b processed_pseudogene Interval_58348 chr15 32991673 32992105 + 0 NA intron (ENSMUSG00000022261.6, intron 1 of 4) protein_coding-intron (ENSMUSG00000022261.6, intron 1 of 4) 71166 ENSMUSG00000022261.6 ENSMUSG00000022261 ENSMUST00000022871 Sdc2 protein_coding Interval_155286 chr8 30839872 30840406 + 0 NA Intergenic Intergenic -163769 ENSMUSG00000109614.1 ENSMUSG00000109614 ENSMUST00000211579 Gm45252 processed_pseudogene Interval_113926 chr4 59895077 59896505 + 0 NA promoter-TSS (ENSMUSG00000073843.3) antisense-promoter-TSS (ENSMUSG00000073843.3) -867 ENSMUSG00000073843.3 ENSMUSG00000073843 ENSMUST00000133015 Gm12542 antisense Interval_64707 chr16 14369983 14370430 + 0 NA intron (ENSMUSG00000023088.17, intron 1 of 2) protein_coding-intron (ENSMUSG00000023088.17, intron 1 of 30) 8639 ENSMUSG00000023088.17 ENSMUSG00000023088 ENSMUST00000146032 Abcc1 protein_coding Interval_151828 chr7 126948764 126950521 + 0 NA promoter-TSS (ENSMUSG00000046378.11) protein_coding-promoter-TSS (ENSMUSG00000046378.11) -483 ENSMUSG00000046378.11 ENSMUSG00000046378 ENSMUST00000106339 Asphd1 protein_coding Interval_22444 chr11 10193868 10194100 + 0 NA Intergenic Intergenic -45353 ENSMUSG00000082312.1 ENSMUSG00000082312 ENSMUST00000117538 Gm11996 processed_pseudogene Interval_68355 chr16 74053095 74053699 + 0 NA intron (ENSMUSG00000052516.19, intron 2 of 21) protein_coding-intron (ENSMUSG00000052516.19, intron 2 of 25) 5636 ENSMUSG00000089033.1 ENSMUSG00000089033 ENSMUST00000158408 Gm22163 snoRNA Interval_166382 chr9 58789429 58789655 + 0 NA Intergenic Intergenic -33870 ENSMUSG00000032338.9 ENSMUSG00000032338 ENSMUST00000034889 Hcn4 protein_coding Interval_66315 chr16 33102521 33103223 + 0 NA intron (ENSMUSG00000022802.2, intron 2 of 2) protein_coding-intron (ENSMUSG00000022802.2, intron 12 of 16) -2489 ENSMUSG00000088860.1 ENSMUSG00000088860 ENSMUST00000158235 Mir1947 miRNA Interval_27294 chr11 65603708 65603965 + 0 NA Intergenic Intergenic -22558 ENSMUSG00000065104.1 ENSMUSG00000065104 ENSMUST00000083170 Gm26128 snRNA Interval_120511 chr4 149073316 149073861 + 0 NA intron (ENSMUSG00000028975.16, intron 2 of 3) protein_coding-intron (ENSMUSG00000028975.16, intron 2 of 8) -22795 ENSMUSG00000081086.1 ENSMUSG00000081086 ENSMUST00000118516 Gm9506 processed_pseudogene Interval_88505 chr2 5673720 5674770 + 0 NA intron (ENSMUSG00000039145.16, intron 1 of 1) protein_coding-intron (ENSMUSG00000039145.16, intron 1 of 10) 40258 ENSMUSG00000039145.16 ENSMUSG00000039145 ENSMUST00000155927 Camk1d protein_coding Interval_82018 chr18 67227951 67228831 + 0 NA exon (ENSMUSG00000062526.4, exon 6 of 9) protein_coding-exon (ENSMUSG00000062526.4, exon 6 of 9) 17050 ENSMUSG00000062526.4 ENSMUSG00000062526 ENSMUST00000237631 Mppe1 protein_coding Interval_13137 chr10 12218717 12219134 + 0 NA Intergenic Intergenic 105736 ENSMUSG00000112156.1 ENSMUSG00000112156 ENSMUST00000219252 Gm48723 lincRNA Interval_68232 chr16 70028498 70028990 + 0 NA Intergenic Intergenic 85973 ENSMUSG00000116588.1 ENSMUSG00000116588 ENSMUST00000231343 Gm49655 lincRNA Interval_51100 chr14 23046558 23046745 + 0 NA intron (ENSMUSG00000068680.1, intron 2 of 3) protein_coding-intron (ENSMUSG00000063458.13, intron 6 of 6) 47920 ENSMUSG00000068680.1 ENSMUSG00000068680 ENSMUST00000090409 Gm10248 antisense Interval_102957 chr3 33618724 33619087 + 0 NA Intergenic Intergenic -2703 ENSMUSG00000103423.1 ENSMUSG00000103423 ENSMUST00000195812 Gm5845 processed_pseudogene Interval_29297 chr11 82762292 82762612 + 0 NA intron (ENSMUSG00000020698.11, intron 1 of 13) protein_coding-intron (ENSMUSG00000020698.11, intron 1 of 13) 1869 ENSMUSG00000020698.11 ENSMUSG00000020698 ENSMUST00000100722 Cct6b protein_coding Interval_22967 chr11 18122457 18123315 + 0 NA Intergenic Intergenic 26900 ENSMUSG00000085453.1 ENSMUSG00000085453 ENSMUST00000150694 Gm12018 lincRNA Interval_38437 chr12 79027583 79030120 + 0 NA promoter-TSS (ENSMUSG00000060716.7) protein_coding-promoter-TSS (ENSMUSG00000060716.7) -6785 ENSMUSG00000060716.7 ENSMUSG00000060716 ENSMUST00000219946 Plekhh1 protein_coding Interval_173145 chrX 73458435 73459526 + 0 NA promoter-TSS (ENSMUSG00000031371.14) protein_coding-promoter-TSS (ENSMUSG00000031371.14) -11701 ENSMUSG00000031371.14 ENSMUSG00000031371 ENSMUST00000131140 Haus7 protein_coding Interval_99108 chr2 157259530 157260586 + 0 NA intron (ENSMUSG00000074627.11, intron 1 of 5) protein_coding-intron (ENSMUSG00000074627.11, intron 4 of 24) 19491 ENSMUSG00000074627.11 ENSMUSG00000074627 ENSMUST00000150035 Mroh8 protein_coding Interval_22339 chr11 8955445 8955992 + 0 NA intron (ENSMUSG00000046634.12, intron 6 of 49) protein_coding-intron (ENSMUSG00000046634.12, intron 6 of 49) -5179 ENSMUSG00000046634.12 ENSMUSG00000046634 ENSMUST00000155886 Pkd1l1 protein_coding Interval_17140 chr10 72391124 72391984 + 0 NA Intergenic Intergenic 82233 ENSMUSG00000053830.4 ENSMUSG00000053830 ENSMUST00000217785 Gm9923 processed_pseudogene Interval_2679 chr1 43269125 43270135 + 0 NA intron (ENSMUSG00000099576.1, intron 2 of 5) lincRNA-intron (ENSMUSG00000099576.1, intron 2 of 5) -1053 ENSMUSG00000099694.1 ENSMUSG00000099694 ENSMUST00000187749 Gm29610 processed_pseudogene Interval_143265 chr7 4856872 4857731 + 0 NA intron (ENSMUSG00000052605.12, intron 1 of 5) protein_coding-intron (ENSMUSG00000052605.12, intron 1 of 5) 12957 ENSMUSG00000052605.12 ENSMUSG00000052605 ENSMUST00000208173 Isoc2b protein_coding Interval_115005 chr4 88360330 88361642 + 0 NA intron (ENSMUSG00000038368.16, intron 31 of 41) protein_coding-intron (ENSMUSG00000038368.16, intron 33 of 43) -39364 ENSMUSG00000038368.16 ENSMUSG00000038368 ENSMUST00000107147 Focad protein_coding Interval_79982 chr18 36420969 36421944 + 0 NA intron (ENSMUSG00000024346.6, intron 2 of 2) protein_coding-intron (ENSMUSG00000024346.6, intron 3 of 3) 33068 ENSMUSG00000024346.6 ENSMUSG00000024346 ENSMUST00000237499 Pfdn1 protein_coding Interval_94749 chr2 93982615 93982977 + 0 NA intron (ENSMUSG00000027196.11, intron 3 of 3) antisense-intron (ENSMUSG00000027196.11, intron 4 of 4) 2762 ENSMUSG00000027196.11 ENSMUSG00000027196 ENSMUST00000028621 Alkbh3os1 antisense Interval_144191 chr7 19876064 19877731 + 0 NA exon (ENSMUSG00000049848.7, exon 7 of 7) protein_coding-exon (ENSMUSG00000049848.7, exon 7 of 7) -5459 ENSMUSG00000109214.1 ENSMUSG00000109214 ENSMUST00000207269 Gm44659 lincRNA Interval_156431 chr8 48126185 48127443 + 0 NA intron (ENSMUSG00000031562.15, intron 3 of 3) protein_coding-intron (ENSMUSG00000031562.15, intron 3 of 5) 16652 ENSMUSG00000031562.15 ENSMUSG00000031562 ENSMUST00000174379 Dctd protein_coding Interval_47386 chr13 82820322 82820982 + 0 NA Intergenic Intergenic -122319 ENSMUSG00000106655.1 ENSMUSG00000106655 ENSMUST00000198795 Mir3961 miRNA Interval_79648 chr18 34240699 34241183 + 0 NA intron (ENSMUSG00000005871.15, intron 1 of 13) protein_coding-intron (ENSMUSG00000005871.15, intron 1 of 15) 20017 ENSMUSG00000005871.15 ENSMUSG00000005871 ENSMUST00000167136 Apc protein_coding Interval_107613 chr3 108884708 108885051 + 0 NA intron (ENSMUSG00000045326.13, intron 1 of 12) protein_coding-intron (ENSMUSG00000045326.13, intron 2 of 11) 3056 ENSMUSG00000105175.1 ENSMUSG00000105175 ENSMUST00000196867 Gm43097 processed_pseudogene Interval_98876 chr2 155721250 155721582 + 0 NA intron (ENSMUSG00000038312.10, intron 4 of 10) protein_coding-intron (ENSMUSG00000038312.10, intron 4 of 10) -8098 ENSMUSG00000038312.10 ENSMUSG00000038312 ENSMUST00000139868 Edem2 protein_coding Interval_76309 chr17 78948427 78948981 + 0 NA TTS (ENSMUSG00000024070.15) protein_coding-TTS (ENSMUSG00000024070.15) 3677 ENSMUSG00000024082.5 ENSMUSG00000024082 ENSMUST00000232821 Ndufaf7 protein_coding Interval_40634 chr12 106139581 106141043 + 0 NA intron (ENSMUSG00000114149.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000114149.1, intron 1 of 1) 5088 ENSMUSG00000114149.1 ENSMUSG00000114149 ENSMUST00000223462 Gm47646 lincRNA Interval_39428 chr12 87343873 87345752 + 0 NA promoter-TSS (ENSMUSG00000021036.10) protein_coding-promoter-TSS (ENSMUSG00000021036.10) -16199 ENSMUSG00000021036.10 ENSMUSG00000021036 ENSMUST00000167911 Sptlc2 protein_coding Interval_97017 chr2 130557640 130558416 + 0 NA intron (ENSMUSG00000060029.13, intron 2 of 8) antisense-intron (ENSMUSG00000060029.13, intron 4 of 10) -5714 ENSMUSG00000037740.8 ENSMUSG00000037740 ENSMUST00000145614 Mrps26 protein_coding Interval_157626 chr8 71893748 71894232 + 0 NA exon (ENSMUSG00000056019.12, exon 4 of 4) protein_coding-exon (ENSMUSG00000056019.12, exon 4 of 4) 11623 ENSMUSG00000056019.12 ENSMUSG00000056019 ENSMUST00000034259 Zfp709 protein_coding Interval_108387 chr3 126509556 126509959 + 0 NA Intergenic Intergenic 62014 ENSMUSG00000105233.1 ENSMUSG00000105233 ENSMUST00000197129 Gm20568 processed_pseudogene Interval_79655 chr18 34280746 34281206 + 0 NA intron (ENSMUSG00000005871.15, intron 7 of 10) protein_coding-intron (ENSMUSG00000005871.15, intron 7 of 8) -50200 ENSMUSG00000014504.16 ENSMUSG00000014504 ENSMUST00000142010 Srp19 protein_coding Interval_69913 chr17 3150922 3151941 + 0 NA exon (ENSMUSG00000046201.9, exon 4 of 4) protein_coding-exon (ENSMUSG00000046201.9, exon 4 of 4) -20919 ENSMUSG00000116941.1 ENSMUSG00000116941 ENSMUST00000232579 Gm46578 processed_pseudogene Interval_6394 chr1 106855336 106855937 + 0 NA Intergenic Intergenic -5538 ENSMUSG00000067006.12 ENSMUSG00000067006 ENSMUST00000112729 Serpinb5 protein_coding Interval_86448 chr19 40587833 40589517 + 0 NA promoter-TSS (ENSMUSG00000025007.13) protein_coding-promoter-TSS (ENSMUSG00000025007.13) -291 ENSMUSG00000025007.13 ENSMUSG00000025007 ENSMUST00000175932 Aldh18a1 protein_coding Interval_97462 chr2 136790445 136790978 + 0 NA Intergenic Intergenic -46096 ENSMUSG00000082849.1 ENSMUSG00000082849 ENSMUST00000121662 Gm14053 processed_pseudogene Interval_93125 chr2 70442901 70444766 + 0 NA Intergenic Intergenic -15149 ENSMUSG00000047965.9 ENSMUSG00000047965 ENSMUST00000140507 Rpl9-ps7 processed_pseudogene Interval_9132 chr1 153922755 153923127 + 0 NA Intergenic Intergenic -16285 ENSMUSG00000100014.1 ENSMUSG00000100014 ENSMUST00000185385 Gm29290 lincRNA Interval_13498 chr10 18749893 18751268 + 0 NA intron (ENSMUSG00000111474.1, intron 1 of 4) antisense-intron (ENSMUSG00000111474.1, intron 1 of 4) -6631 ENSMUSG00000019852.7 ENSMUSG00000019852 ENSMUST00000019999 Arfgef3 protein_coding Interval_146296 chr7 45181537 45183013 + 0 NA TTS (ENSMUSG00000038300.6) protein_coding-TTS (ENSMUSG00000038300.6) 1093 ENSMUSG00000038300.6 ENSMUSG00000038300 ENSMUST00000210086 Pth2 protein_coding Interval_152154 chr7 130219508 130219973 + 0 NA intron (ENSMUSG00000030849.18, intron 5 of 16) protein_coding-intron (ENSMUSG00000030849.18, intron 2 of 14) 46515 ENSMUSG00000030849.18 ENSMUSG00000030849 ENSMUST00000208844 Fgfr2 protein_coding Interval_167859 chr9 73118194 73118615 + 0 NA TTS (ENSMUSG00000092310.2) protein_coding-TTS (ENSMUSG00000092310.2) 4978 ENSMUSG00000032215.15 ENSMUSG00000032215 ENSMUST00000165177 Rsl24d1 protein_coding Interval_70708 chr17 13708248 13708514 + 0 NA intron (ENSMUSG00000117063.1, intron 1 of 4) lincRNA-intron (ENSMUSG00000117063.1, intron 1 of 4) -24894 ENSMUSG00000085705.1 ENSMUSG00000085705 ENSMUST00000128138 Gm16046 lincRNA Interval_90581 chr2 31245360 31247007 + 0 NA promoter-TSS (ENSMUSG00000062661.6) protein_coding-promoter-TSS (ENSMUSG00000062661.6) 17 ENSMUSG00000062661.6 ENSMUSG00000062661 ENSMUST00000150670 Ncs1 protein_coding Interval_99014 chr2 156676673 156677482 + 0 NA intron (ENSMUSG00000061689.15, intron 2 of 12) protein_coding-intron (ENSMUSG00000061689.15, intron 2 of 12) -43609 ENSMUSG00000083498.1 ENSMUSG00000083498 ENSMUST00000118255 Gm14172 processed_pseudogene Interval_70472 chr17 10447248 10447512 + 0 NA intron (ENSMUSG00000037196.6, intron 4 of 4) protein_coding-intron (ENSMUSG00000037196.6, intron 4 of 4) -8836 ENSMUSG00000089633.2 ENSMUSG00000089633 ENSMUST00000160738 A230009B12Rik antisense Interval_2973 chr1 51746459 51748619 + 0 NA promoter-TSS (ENSMUSG00000101741.1) lincRNA-promoter-TSS (ENSMUSG00000101741.1) -49639 ENSMUSG00000101741.1 ENSMUSG00000101741 ENSMUST00000186769 Gm28055 lincRNA Interval_109508 chr3 143158439 143159107 + 0 NA TTS (ENSMUSG00000106052.1) lincRNA-TTS (ENSMUSG00000106052.1) 50825 ENSMUSG00000106052.1 ENSMUSG00000106052 ENSMUST00000197030 Gm43614 lincRNA Interval_123352 chr5 31628569 31629332 + 0 NA intron (ENSMUSG00000029136.9, intron 7 of 7) protein_coding-intron (ENSMUSG00000029136.9, intron 7 of 7) 14978 ENSMUSG00000105617.4 ENSMUSG00000105617 ENSMUST00000202033 Gm43809 processed_transcript Interval_116209 chr4 108696864 108697537 + 0 NA intron (ENSMUSG00000034557.14, intron 1 of 15) protein_coding-intron (ENSMUSG00000034557.14, intron 1 of 15) -22449 ENSMUSG00000094958.1 ENSMUSG00000094958 ENSMUST00000178992 3110021N24Rik protein_coding Interval_88810 chr2 11340610 11340850 + 0 NA intron (ENSMUSG00000086006.2, intron 1 of 3) lincRNA-intron (ENSMUSG00000086006.2, intron 1 of 3) 1242 ENSMUSG00000086006.2 ENSMUSG00000086006 ENSMUST00000131188 Gm13293 lincRNA Interval_104294 chr3 62962829 62963450 + 0 NA Intergenic Intergenic -38906 ENSMUSG00000063001.10 ENSMUSG00000063001 ENSMUST00000077976 Gm9701 processed_pseudogene Interval_31239 chr11 99075281 99076024 + 0 NA promoter-TSS (ENSMUSG00000017607.9) protein_coding-promoter-TSS (ENSMUSG00000017607.9) -311 ENSMUSG00000017607.9 ENSMUSG00000017607 ENSMUST00000123303 Tns4 protein_coding Interval_65526 chr16 23087758 23088944 + 0 NA Intergenic Intergenic -4592 ENSMUSG00000116625.1 ENSMUSG00000116625 ENSMUST00000231398 Gm8134 processed_pseudogene Interval_62300 chr15 89569214 89569639 + 0 NA exon (ENSMUSG00000022622.5, exon 2 of 5) protein_coding-exon (ENSMUSG00000022622.5, exon 2 of 5) 1063 ENSMUSG00000022622.5 ENSMUSG00000022622 ENSMUST00000230978 Acr protein_coding Interval_107151 chr3 103942941 103943228 + 0 NA intron (ENSMUSG00000044098.14, intron 3 of 7) protein_coding-intron (ENSMUSG00000044098.14, intron 2 of 7) 14466 ENSMUSG00000044098.14 ENSMUSG00000044098 ENSMUST00000185731 Rsbn1 protein_coding Interval_169715 chr9 100605168 100607132 + 0 NA intron (ENSMUSG00000037286.15, intron 1 of 3) protein_coding-intron (ENSMUSG00000037286.15, intron 1 of 3) -1162 ENSMUSG00000111164.1 ENSMUSG00000111164 ENSMUST00000215061 Gm47803 processed_pseudogene Interval_1151 chr1 16162979 16163238 + 0 NA Intergenic Intergenic 32606 ENSMUSG00000025921.7 ENSMUSG00000025921 ENSMUST00000152626 Rdh10 protein_coding Interval_100756 chr2 172380618 172381544 + 0 NA exon (ENSMUSG00000027498.14, exon 6 of 6) protein_coding-exon (ENSMUSG00000027498.14, exon 6 of 6) 10400 ENSMUSG00000027498.14 ENSMUSG00000027498 ENSMUST00000116375 Cstf1 protein_coding Interval_88940 chr2 13264990 13265351 + 0 NA intron (ENSMUSG00000026727.10, intron 2 of 8) protein_coding-intron (ENSMUSG00000026727.10, intron 2 of 8) 6126 ENSMUSG00000026727.10 ENSMUSG00000026727 ENSMUST00000195538 Rsu1 protein_coding Interval_11779 chr1 185369664 185369857 + 0 NA intron (ENSMUSG00000026615.14, intron 2 of 4) protein_coding-intron (ENSMUSG00000026615.14, intron 3 of 31) 2170 ENSMUSG00000026615.14 ENSMUSG00000026615 ENSMUST00000192049 Eprs protein_coding Interval_72858 chr17 32724810 32726241 + 0 NA Intergenic Intergenic -5485 ENSMUSG00000117651.1 ENSMUSG00000117651 ENSMUST00000233998 Gm6452 processed_pseudogene Interval_7880 chr1 134339685 134340404 + 0 NA Intergenic Intergenic 21897 ENSMUSG00000042305.12 ENSMUSG00000042305 ENSMUST00000185903 Tmem183a protein_coding Interval_106489 chr3 96667503 96667729 + 0 NA promoter-TSS (ENSMUSG00000105144.1) processed_pseudogene-promoter-TSS (ENSMUSG00000105144.1) -634 ENSMUSG00000105144.1 ENSMUSG00000105144 ENSMUST00000077278 Rpl21-ps11 processed_pseudogene Interval_13786 chr10 22113595 22114125 + 0 NA TTS (ENSMUSG00000097214.1) unprocessed_pseudogene-TTS (ENSMUSG00000097214.1) 3239 ENSMUSG00000097214.1 ENSMUSG00000097214 ENSMUST00000180398 Gm19791 unprocessed_pseudogene Interval_96825 chr2 128640802 128641831 + 0 NA TTS (ENSMUSG00000014355.10) protein_coding-TTS (ENSMUSG00000014355.10) -12677 ENSMUSG00000014355.10 ENSMUSG00000014355 ENSMUST00000110332 Anapc1 protein_coding Interval_8532 chr1 140909753 140910430 + 0 NA Intergenic Intergenic 86764 ENSMUSG00000102500.1 ENSMUSG00000102500 ENSMUST00000194837 Gm37371 TEC Interval_110591 chr4 4324797 4325053 + 0 NA Intergenic Intergenic -186106 ENSMUSG00000045573.9 ENSMUSG00000045573 ENSMUST00000133567 Penk protein_coding Interval_34712 chr12 8877660 8878434 + 0 NA promoter-TSS (ENSMUSG00000042976.6) lincRNA-promoter-TSS (ENSMUSG00000042976.6) -665 ENSMUSG00000042976.6 ENSMUSG00000042976 ENSMUST00000218928 9930038B18Rik lincRNA Interval_50905 chr14 20694519 20695905 + 0 NA TTS (ENSMUSG00000039367.11) protein_coding-TTS (ENSMUSG00000039367.11) 235 ENSMUSG00000039357.2 ENSMUSG00000039357 ENSMUST00000225804 Fut11 protein_coding Interval_107089 chr3 103419802 103420184 + 0 NA Intergenic Intergenic -7444 ENSMUSG00000065789.1 ENSMUSG00000065789 ENSMUST00000083855 Gm25869 snRNA Interval_91179 chr2 35690973 35692476 + 0 NA promoter-TSS (ENSMUSG00000026883.17) protein_coding-promoter-TSS (ENSMUSG00000026883.17) -18603 ENSMUSG00000026883.17 ENSMUSG00000026883 ENSMUST00000156669 Dab2ip protein_coding Interval_51721 chr14 31630633 31631624 + 0 NA intron (ENSMUSG00000021884.18, intron 4 of 14) protein_coding-intron (ENSMUSG00000021884.18, intron 4 of 14) 9750 ENSMUSG00000115022.1 ENSMUSG00000115022 ENSMUST00000167175 Gm49387 protein_coding Interval_79732 chr18 34782623 34783966 + 0 NA intron (ENSMUSG00000038773.11, intron 1 of 22) protein_coding-intron (ENSMUSG00000038773.11, intron 1 of 23) -13601 ENSMUSG00000038773.11 ENSMUSG00000038773 ENSMUST00000223567 Kdm3b protein_coding Interval_100073 chr2 166937672 166938147 + 0 NA TTS (ENSMUSG00000002718.14) protein_coding-TTS (ENSMUSG00000002718.14) -5630 ENSMUSG00000090397.1 ENSMUSG00000090397 ENSMUST00000172037 Gm17096 antisense Interval_121806 chr5 8397554 8398486 + 0 NA TTS (ENSMUSG00000002297.16) protein_coding-TTS (ENSMUSG00000002297.16) 24649 ENSMUSG00000002297.16 ENSMUSG00000002297 ENSMUST00000198785 Dbf4 protein_coding Interval_149151 chr7 95350153 95350552 + 0 NA Intergenic Intergenic 92105 ENSMUSG00000065875.1 ENSMUSG00000065875 ENSMUST00000083941 Gm25684 snRNA Interval_105251 chr3 84208522 84208797 + 0 NA exon (ENSMUSG00000027993.16, exon 2 of 2) protein_coding-exon (ENSMUSG00000027993.16, exon 2 of 2) 34555 ENSMUSG00000104043.1 ENSMUSG00000104043 ENSMUST00000193882 Gm6525 protein_coding Interval_64090 chr16 7740640 7740915 + 0 NA Intergenic Intergenic -31711 ENSMUSG00000115989.1 ENSMUSG00000115989 ENSMUST00000229672 Gm49533 processed_pseudogene Interval_27572 chr11 68785563 68786233 + 0 NA exon (ENSMUSG00000020900.15, exon 23 of 43) protein_coding-exon (ENSMUSG00000020900.15, exon 23 of 43) 74098 ENSMUSG00000018736.14 ENSMUSG00000018736 ENSMUST00000127469 Ndel1 protein_coding Interval_111232 chr4 15301142 15301764 + 0 NA Intergenic Intergenic 35622 ENSMUSG00000043252.8 ENSMUSG00000043252 ENSMUST00000062684 Tmem64 protein_coding Interval_157651 chr8 72068570 72069043 + 0 NA Intergenic Intergenic 10286 ENSMUSG00000110522.1 ENSMUSG00000110522 ENSMUST00000212779 Gm45735 processed_pseudogene Interval_83727 chr19 3979444 3981025 + 0 NA intron (ENSMUSG00000075296.5, intron 8 of 9) protein_coding-intron (ENSMUSG00000075296.5, intron 8 of 9) -6337 ENSMUSG00000024866.10 ENSMUSG00000024866 ENSMUST00000235592 Acy3 protein_coding Interval_165165 chr9 44929755 44930014 + 0 NA intron (ENSMUSG00000059890.16, intron 18 of 19) protein_coding-intron (ENSMUSG00000059890.16, intron 18 of 19) 9685 ENSMUSG00000111082.1 ENSMUSG00000111082 ENSMUST00000215803 Gm30934 antisense Interval_21465 chr10 128758841 128760097 + 0 NA intron (ENSMUSG00000064030.15, intron 2 of 3) protein_coding-intron (ENSMUSG00000064030.15, intron 1 of 2) 10941 ENSMUSG00000064030.15 ENSMUSG00000064030 ENSMUST00000218218 Pym1 protein_coding Interval_32142 chr11 105541602 105542213 + 0 NA Intergenic Intergenic -55718 ENSMUSG00000080681.1 ENSMUSG00000080681 ENSMUST00000117031 Gm23990 miRNA Interval_95818 chr2 116899714 116900765 + 0 NA promoter-TSS (ENSMUSG00000085316.1) lincRNA-promoter-TSS (ENSMUSG00000085316.1) 45 ENSMUSG00000085316.1 ENSMUSG00000085316 ENSMUST00000155323 D330050G23Rik lincRNA Interval_115305 chr4 95658461 95659378 + 0 NA intron (ENSMUSG00000028573.18, intron 1 of 6) protein_coding-intron (ENSMUSG00000028573.18, intron 5 of 10) -96760 ENSMUSG00000093492.1 ENSMUSG00000093492 ENSMUST00000177219 Gm20651 processed_pseudogene Interval_22535 chr11 11573426 11574027 + 0 NA intron (ENSMUSG00000087452.1, intron 1 of 2) antisense-intron (ENSMUSG00000087452.1, intron 1 of 2) 16305 ENSMUSG00000087452.1 ENSMUSG00000087452 ENSMUST00000146304 Gm11998 antisense Interval_60853 chr15 77163102 77164474 + 0 NA intron (ENSMUSG00000033565.18, intron 1 of 3) protein_coding-intron (ENSMUSG00000033565.18, intron 2 of 12) 14476 ENSMUSG00000116185.1 ENSMUSG00000116185 ENSMUST00000230993 Gm49411 TEC Interval_140708 chr6 120753088 120753346 + 0 NA intron (ENSMUSG00000071226.11, intron 6 of 7) protein_coding-intron (ENSMUSG00000071226.11, intron 10 of 18) 17461 ENSMUSG00000071226.11 ENSMUSG00000071226 ENSMUST00000143563 Cecr2 protein_coding Interval_11610 chr1 183272932 183273643 + 0 NA Intergenic Intergenic -3713 ENSMUSG00000118599.1 ENSMUSG00000118599 ENSMUST00000239174 AC122792.1 unitary_pseudogene Interval_145049 chr7 29725403 29727145 + 0 NA promoter-TSS (ENSMUSG00000049123.10) protein_coding-promoter-TSS (ENSMUSG00000049123.10) -805 ENSMUSG00000049123.10 ENSMUSG00000049123 ENSMUST00000207130 Catsperg2 protein_coding Interval_54759 chr14 74824795 74825154 + 0 NA intron (ENSMUSG00000068015.8, intron 4 of 18) protein_coding-intron (ENSMUSG00000068015.8, intron 4 of 19) -29669 ENSMUSG00000068015.8 ENSMUSG00000068015 ENSMUST00000227433 Lrch1 protein_coding Interval_52654 chr14 48302652 48304366 + 0 NA Intergenic Intergenic 59106 ENSMUSG00000114991.1 ENSMUSG00000114991 ENSMUST00000228144 1700128I11Rik lincRNA Interval_76778 chr17 83988832 83991238 + 0 NA Intergenic Intergenic -18859 ENSMUSG00000117431.1 ENSMUSG00000117431 ENSMUST00000235072 8430430B14Rik lincRNA Interval_161295 chr8 119585877 119586173 + 0 NA intron (ENSMUSG00000031831.6, intron 5 of 11) protein_coding-intron (ENSMUSG00000031831.6, intron 5 of 11) 10790 ENSMUSG00000031831.6 ENSMUSG00000031831 ENSMUST00000093100 Dnaaf1 protein_coding Interval_20374 chr10 117166655 117167517 + 0 NA Intergenic Intergenic -10546 ENSMUSG00000112753.1 ENSMUSG00000112753 ENSMUST00000219785 4930423D24Rik lincRNA Interval_42691 chr13 17982986 17984175 + 0 NA exon (ENSMUSG00000075054.5, exon 3 of 3) protein_coding-exon (ENSMUSG00000075054.5, exon 3 of 3) 8953 ENSMUSG00000113030.1 ENSMUSG00000113030 ENSMUST00000223489 Gm48778 processed_transcript Interval_149594 chr7 99916611 99917973 + 0 NA intron (ENSMUSG00000035211.9, intron 7 of 7) protein_coding-intron (ENSMUSG00000035211.9, intron 18 of 18) 11130 ENSMUSG00000035211.9 ENSMUSG00000035211 ENSMUST00000208449 Xrra1 protein_coding Interval_74169 chr17 46878511 46878880 + 0 NA Intergenic Intergenic -11989 ENSMUSG00000036430.8 ENSMUSG00000036430 ENSMUST00000040434 Tbcc protein_coding Interval_167982 chr9 75243898 75244795 + 0 NA intron (ENSMUSG00000033590.8, intron 2 of 29) protein_coding-intron (ENSMUSG00000033590.8, intron 2 of 40) 12270 ENSMUSG00000033590.8 ENSMUSG00000033590 ENSMUST00000216529 Myo5c protein_coding Interval_83888 chr19 5375056 5375408 + 0 NA Intergenic Intergenic 8014 ENSMUSG00000039148.5 ENSMUSG00000039148 ENSMUST00000235908 Sart1 protein_coding Interval_120571 chr4 149445113 149446983 + 0 NA Intergenic Intergenic 7376 ENSMUSG00000028996.9 ENSMUSG00000028996 ENSMUST00000132103 Rbp7 protein_coding Interval_22192 chr11 7049150 7049500 + 0 NA Intergenic Intergenic -110557 ENSMUSG00000020431.5 ENSMUSG00000020431 ENSMUST00000135398 Adcy1 protein_coding Interval_108754 chr3 131064644 131065483 + 0 NA Intergenic Intergenic -38693 ENSMUSG00000104859.1 ENSMUSG00000104859 ENSMUST00000197848 A430072C10Rik TEC Interval_86160 chr19 37178008 37178562 + 0 NA promoter-TSS (ENSMUSG00000039652.16) protein_coding-promoter-TSS (ENSMUSG00000039652.16) -901 ENSMUSG00000092994.1 ENSMUSG00000092994 ENSMUST00000175253 Gm23918 rRNA Interval_157249 chr8 68460771 68461732 + 0 NA TTS (ENSMUSG00000036356.15) protein_coding-TTS (ENSMUSG00000036356.15) 4103 ENSMUSG00000087489.1 ENSMUSG00000087489 ENSMUST00000132076 Gm15656 antisense Interval_82137 chr18 67966635 67967430 + 0 NA intron (ENSMUSG00000024544.9, intron 1 of 5) protein_coding-intron (ENSMUSG00000024544.9, intron 1 of 5) 59404 ENSMUSG00000118326.1 ENSMUSG00000118326 ENSMUST00000235570 Gm8887 processed_pseudogene Interval_36810 chr12 54265279 54265615 + 0 NA Intergenic Intergenic -24547 ENSMUSG00000088386.1 ENSMUSG00000088386 ENSMUST00000157761 Gm24692 snRNA Interval_135489 chr6 39600519 39600960 + 0 NA exon (ENSMUSG00000002416.13, exon 4 of 4) protein_coding-exon (ENSMUSG00000002416.13, exon 4 of 4) -7955 ENSMUSG00000086582.1 ENSMUSG00000086582 ENSMUST00000128218 Gm16272 antisense Interval_80340 chr18 39488902 39491894 + 0 NA promoter-TSS (ENSMUSG00000024431.15) protein_coding-promoter-TSS (ENSMUSG00000024431.15) 29023 ENSMUSG00000024431.15 ENSMUSG00000024431 ENSMUST00000150483 Nr3c1 protein_coding Interval_14488 chr10 34265193 34265399 + 0 NA Intergenic Intergenic -16894 ENSMUSG00000047514.6 ENSMUSG00000047514 ENSMUST00000061372 Tspyl1 protein_coding Interval_27513 chr11 68341357 68342563 + 0 NA intron (ENSMUSG00000020902.12, intron 3 of 7) protein_coding-intron (ENSMUSG00000020902.12, intron 2 of 6) 45052 ENSMUSG00000020902.12 ENSMUSG00000020902 ENSMUST00000135141 Ntn1 protein_coding Interval_172672 chrX 41995718 41995997 + 0 NA Intergenic Intergenic 47025 ENSMUSG00000104879.1 ENSMUSG00000104879 ENSMUST00000198566 Gm44490 miRNA Interval_40309 chr12 103484191 103484581 + 0 NA intron (ENSMUSG00000113383.1, intron 2 of 3) lincRNA-intron (ENSMUSG00000113383.1, intron 2 of 3) 944 ENSMUSG00000113383.1 ENSMUSG00000113383 ENSMUST00000221223 Gm47267 lincRNA Interval_9481 chr1 157537939 157538228 + 0 NA promoter-TSS (ENSMUSG00000026589.14) protein_coding-promoter-TSS (ENSMUSG00000026589.14) 32 ENSMUSG00000026589.14 ENSMUSG00000026589 ENSMUST00000155665 Sec16b protein_coding Interval_139850 chr6 111154086 111154523 + 0 NA intron (ENSMUSG00000056755.13, intron 5 of 9) protein_coding-intron (ENSMUSG00000056755.13, intron 4 of 10) -341440 ENSMUSG00000056755.13 ENSMUSG00000056755 ENSMUST00000174310 Grm7 protein_coding Interval_94157 chr2 84741982 84744596 + 0 NA intron (ENSMUSG00000097187.1, intron 1 of 1) protein_coding-intron (ENSMUSG00000097187.1, intron 1 of 1) 366 ENSMUSG00000097187.1 ENSMUSG00000097187 ENSMUST00000181711 Gm19426 protein_coding Interval_1430 chr1 23220203 23220958 + 0 NA intron (ENSMUSG00000101227.1, intron 1 of 3) sense_overlapping-intron (ENSMUSG00000101227.1, intron 1 of 3) 15093 ENSMUSG00000101227.1 ENSMUSG00000101227 ENSMUST00000191045 Gm29506 sense_overlapping Interval_68265 chr16 71584453 71584643 + 0 NA Intergenic Intergenic -79240 ENSMUSG00000065924.1 ENSMUSG00000065924 ENSMUST00000083990 Gm22797 snoRNA Interval_125852 chr5 75031264 75031514 + 0 NA intron (ENSMUSG00000029229.8, intron 1 of 4) protein_coding-intron (ENSMUSG00000029229.8, intron 1 of 5) -8308 ENSMUSG00000107205.1 ENSMUSG00000107205 ENSMUST00000202336 Gm42576 TEC Interval_114168 chr4 65604353 65605565 + 0 NA promoter-TSS (ENSMUSG00000051675.13) protein_coding-promoter-TSS (ENSMUSG00000051675.13) -290 ENSMUSG00000051675.13 ENSMUSG00000051675 ENSMUST00000156922 Trim32 protein_coding Interval_125831 chr5 74803748 74803935 + 0 NA Intergenic Intergenic 53959 ENSMUSG00000106987.1 ENSMUSG00000106987 ENSMUST00000202942 Gm42575 lincRNA Interval_2974 chr1 51758673 51759344 + 0 NA intron (ENSMUSG00000018417.14, intron 25 of 28) protein_coding-intron (ENSMUSG00000018417.14, intron 27 of 30) -61108 ENSMUSG00000101741.1 ENSMUSG00000101741 ENSMUST00000186769 Gm28055 lincRNA Interval_136470 chr6 54759870 54760745 + 0 NA Intergenic Intergenic -56963 ENSMUSG00000058446.14 ENSMUSG00000058446 ENSMUST00000127331 Znrf2 protein_coding Interval_163201 chr9 18078532 18079647 + 0 NA Intergenic Intergenic -8956 ENSMUSG00000111728.1 ENSMUSG00000111728 ENSMUST00000216330 Gm48850 processed_pseudogene Interval_135379 chr6 38720580 38720907 + 0 NA intron (ENSMUSG00000061436.15, intron 10 of 14) protein_coding-intron (ENSMUSG00000061436.15, intron 10 of 14) 56864 ENSMUSG00000079598.4 ENSMUSG00000079598 ENSMUST00000238216 Clec2l protein_coding Interval_154477 chr8 18564353 18565090 + 0 NA Intergenic Intergenic -30855 ENSMUSG00000039842.15 ENSMUSG00000039842 ENSMUST00000141244 Mcph1 protein_coding Interval_24417 chr11 33106577 33108051 + 0 NA Intergenic Intergenic 38763 ENSMUSG00000087318.1 ENSMUSG00000087318 ENSMUST00000147896 Gm12114 lincRNA Interval_63738 chr15 103168644 103169305 + 0 NA Intergenic Intergenic -5656 ENSMUSG00000036061.10 ENSMUSG00000036061 ENSMUST00000230529 Smug1 protein_coding Interval_1427 chr1 23061761 23062659 + 0 NA intron (ENSMUSG00000101227.1, intron 3 of 3) sense_overlapping-intron (ENSMUSG00000101227.1, intron 3 of 3) 40043 ENSMUSG00000073730.2 ENSMUSG00000073730 ENSMUST00000073179 Ppp1r14bl protein_coding Interval_94134 chr2 84607057 84608710 + 0 NA intron (ENSMUSG00000101645.1, intron 18 of 20) protein_coding-intron (ENSMUSG00000034101.14, intron 17 of 18) 1814 ENSMUSG00000034101.14 ENSMUSG00000034101 ENSMUST00000149317 Ctnnd1 protein_coding Interval_88454 chr2 5249099 5250232 + 0 NA Intergenic Intergenic 10450 ENSMUSG00000084606.1 ENSMUSG00000084606 ENSMUST00000122657 Gm23118 snRNA Interval_146557 chr7 46816227 46816514 + 0 NA TTS (ENSMUSG00000006599.13) protein_coding-TTS (ENSMUSG00000006599.13) 5047 ENSMUSG00000087298.3 ENSMUSG00000087298 ENSMUST00000119337 Gm9392 processed_pseudogene Interval_113163 chr4 48779153 48779356 + 0 NA Intergenic Intergenic -16292 ENSMUSG00000093240.1 ENSMUSG00000093240 ENSMUST00000175499 Gm24573 rRNA Interval_27261 chr11 65081187 65081465 + 0 NA intron (ENSMUSG00000033389.16, intron 1 of 20) protein_coding-intron (ENSMUSG00000033389.16, intron 1 of 20) -13519 ENSMUSG00000076394.1 ENSMUSG00000076394 ENSMUST00000102439 Gm25991 miRNA Interval_137782 chr6 82400922 82403541 + 0 NA promoter-TSS (ENSMUSG00000030043.11) protein_coding-promoter-TSS (ENSMUSG00000030043.11) -103 ENSMUSG00000030043.11 ENSMUSG00000030043 ENSMUST00000203775 Tacr1 protein_coding Interval_13907 chr10 24541053 24541373 + 0 NA Intergenic Intergenic 9127 ENSMUSG00000087400.8 ENSMUSG00000087400 ENSMUST00000125158 Gm15270 processed_transcript Interval_32162 chr11 105834779 105835622 + 0 NA exon (ENSMUSG00000053580.16, exon 9 of 26) protein_coding-exon (ENSMUSG00000053580.16, exon 9 of 26) -40705 ENSMUSG00000081270.1 ENSMUSG00000081270 ENSMUST00000119992 Gm11653 processed_pseudogene Interval_86540 chr19 41587640 41588205 + 0 NA promoter-TSS (ENSMUSG00000098286.1) miRNA-promoter-TSS (ENSMUSG00000098286.1) -729 ENSMUSG00000098286.1 ENSMUSG00000098286 ENSMUST00000183602 Mir8091 miRNA Interval_78232 chr18 10518680 10519008 + 0 NA intron (ENSMUSG00000042942.18, intron 3 of 13) protein_coding-intron (ENSMUSG00000042942.18, intron 15 of 32) 32562 ENSMUSG00000084693.1 ENSMUSG00000084693 ENSMUST00000122744 Gm24894 snoRNA Interval_88694 chr2 9827468 9828245 + 0 NA Intergenic Intergenic 47543 ENSMUSG00000015619.10 ENSMUSG00000015619 ENSMUST00000142305 Gata3 protein_coding Interval_163138 chr9 15588859 15589272 + 0 NA promoter-TSS (ENSMUSG00000039977.16) protein_coding-promoter-TSS (ENSMUSG00000039977.16) -30792 ENSMUSG00000111299.1 ENSMUSG00000111299 ENSMUST00000216952 4930540M03Rik antisense Interval_31215 chr11 98940416 98942495 + 0 NA intron (ENSMUSG00000037992.16, intron 1 of 8) protein_coding-intron (ENSMUSG00000037992.16, intron 1 of 8) 1744 ENSMUSG00000037992.16 ENSMUSG00000037992 ENSMUST00000107473 Rara protein_coding Interval_102973 chr3 33916344 33916595 + 0 NA Intergenic Intergenic -18885 ENSMUSG00000105475.1 ENSMUSG00000105475 ENSMUST00000197426 4930431L21Rik lincRNA Interval_122942 chr5 27686099 27686324 + 0 NA intron (ENSMUSG00000061576.15, intron 12 of 12) protein_coding-intron (ENSMUSG00000061576.15, intron 16 of 25) 105480 ENSMUSG00000002221.11 ENSMUSG00000002221 ENSMUST00000199714 Paxip1 protein_coding Interval_144915 chr7 28910305 28910535 + 0 NA intron (ENSMUSG00000054808.15, intron 7 of 12) protein_coding-intron (ENSMUSG00000054808.15, intron 8 of 20) 19468 ENSMUSG00000054083.8 ENSMUSG00000054083 ENSMUST00000208299 Capn12 protein_coding Interval_33348 chr11 116057253 116059196 + 0 NA intron (ENSMUSG00000020770.13, intron 1 of 1) protein_coding-intron (ENSMUSG00000020770.13, intron 13 of 15) 19366 ENSMUSG00000057948.12 ENSMUSG00000057948 ENSMUST00000156545 Unc13d protein_coding Interval_84649 chr19 14654872 14656643 + 0 NA Intergenic Intergenic -2910 ENSMUSG00000103488.1 ENSMUSG00000103488 ENSMUST00000193515 Gm37997 TEC Interval_66146 chr16 31940719 31941043 + 0 NA intron (ENSMUSG00000045625.5, intron 1 of 2) protein_coding-intron (ENSMUSG00000045625.5, intron 1 of 2) 6938 ENSMUSG00000045625.5 ENSMUSG00000045625 ENSMUST00000134666 Pigz protein_coding Interval_158512 chr8 84183647 84184122 + 0 NA intron (ENSMUSG00000056155.6, intron 1 of 1) protein_coding-intron (ENSMUSG00000056155.6, intron 1 of 1) 1333 ENSMUSG00000056155.6 ENSMUSG00000056155 ENSMUST00000210202 Nanos3 protein_coding Interval_89025 chr2 14716225 14716805 + 0 NA intron (ENSMUSG00000104106.1, intron 1 of 2) protein_coding-intron (ENSMUSG00000057914.15, intron 2 of 13) -4619 ENSMUSG00000083305.2 ENSMUSG00000083305 ENSMUST00000120376 Gm13315 processed_pseudogene Interval_22949 chr11 17890541 17891022 + 0 NA Intergenic Intergenic 63094 ENSMUSG00000016984.7 ENSMUSG00000016984 ENSMUST00000076661 Etaa1 protein_coding Interval_99210 chr2 158079771 158080379 + 0 NA intron (ENSMUSG00000100860.1, intron 3 of 3) protein_coding-intron (ENSMUSG00000027651.16, intron 5 of 5) 11722 ENSMUSG00000100860.1 ENSMUSG00000100860 ENSMUST00000186977 2010009K17Rik antisense Interval_149482 chr7 98986138 98987338 + 0 NA intron (ENSMUSG00000035354.9, intron 5 of 10) protein_coding-intron (ENSMUSG00000035354.9, intron 11 of 14) 29906 ENSMUSG00000035354.9 ENSMUSG00000035354 ENSMUST00000208502 Uvrag protein_coding Interval_91811 chr2 49786892 49788303 + 0 NA promoter-TSS (ENSMUSG00000026765.12) protein_coding-promoter-TSS (ENSMUSG00000026765.12) -134 ENSMUSG00000026765.12 ENSMUSG00000026765 ENSMUST00000129867 Lypd6b protein_coding Interval_73109 chr17 34879095 34880453 + 0 NA intron (ENSMUSG00000049823.9, intron 1 of 2) protein_coding-intron (ENSMUSG00000024371.14, intron 3 of 17) 291 ENSMUSG00000049823.9 ENSMUSG00000049823 ENSMUST00000052778 Zbtb12 protein_coding Interval_100461 chr2 169134555 169134790 + 0 NA Intergenic Intergenic 28219 ENSMUSG00000086238.1 ENSMUSG00000086238 ENSMUST00000144607 Gm14258 lincRNA Interval_150506 chr7 111301942 111302753 + 0 NA Intergenic Intergenic -63951 ENSMUSG00000109808.1 ENSMUSG00000109808 ENSMUST00000211799 5430402P08Rik lincRNA Interval_21770 chr11 4252257 4253424 + 0 NA Intergenic Intergenic -13956 ENSMUSG00000034394.14 ENSMUSG00000034394 ENSMUST00000040750 Lif protein_coding Interval_75858 chr17 71917460 71918065 + 0 NA intron (ENSMUSG00000055471.7, intron 12 of 28) protein_coding-intron (ENSMUSG00000055471.7, intron 12 of 28) 9268 ENSMUSG00000117126.1 ENSMUSG00000117126 ENSMUST00000233690 Gm49924 TEC Interval_131671 chr5 139188848 139189514 + 0 NA Intergenic Intergenic 27175 ENSMUSG00000106127.1 ENSMUSG00000106127 ENSMUST00000196947 4930520M14Rik antisense Interval_115862 chr4 105291229 105291906 + 0 NA Intergenic Intergenic 83379 ENSMUSG00000081819.1 ENSMUSG00000081819 ENSMUST00000118507 Gm12722 processed_pseudogene Interval_114784 chr4 85245983 85246638 + 0 NA promoter-TSS (ENSMUSG00000081862.1) processed_pseudogene-promoter-TSS (ENSMUSG00000081862.1) -548 ENSMUSG00000081862.1 ENSMUSG00000081862 ENSMUST00000121508 Gm12413 processed_pseudogene Interval_156829 chr8 60906201 60906410 + 0 NA TTS (ENSMUSG00000038005.15) protein_coding-TTS (ENSMUSG00000038005.15) 274 ENSMUSG00000038005.15 ENSMUSG00000038005 ENSMUST00000211016 Hpf1 protein_coding Interval_171802 chr9 121291929 121292366 + 0 NA Intergenic Intergenic -5365 ENSMUSG00000032536.12 ENSMUSG00000032536 ENSMUST00000209446 Trak1 protein_coding Interval_47988 chr13 94876771 94877660 + 0 NA exon (ENSMUSG00000021685.11, exon 2 of 3) protein_coding-exon (ENSMUSG00000021685.11, exon 2 of 3) -5385 ENSMUSG00000021685.11 ENSMUSG00000021685 ENSMUST00000184985 Otp protein_coding Interval_1031 chr1 14231446 14231972 + 0 NA promoter-TSS (ENSMUSG00000025932.14) protein_coding-promoter-TSS (ENSMUSG00000025932.14) 24281 ENSMUSG00000102588.1 ENSMUSG00000102588 ENSMUST00000193605 Gm37444 TEC Interval_18799 chr10 90959186 90959360 + 0 NA intron (ENSMUSG00000058589.14, intron 24 of 25) protein_coding-intron (ENSMUSG00000058589.14, intron 10 of 11) -46468 ENSMUSG00000087966.1 ENSMUSG00000087966 ENSMUST00000157341 Gm25390 snRNA Interval_91366 chr2 38313267 38313457 + 0 NA Intergenic Intergenic 28055 ENSMUSG00000087294.2 ENSMUSG00000087294 ENSMUST00000132692 Gm13556 antisense Interval_90412 chr2 30285736 30287241 + 0 NA promoter-TSS (ENSMUSG00000052533.14) protein_coding-promoter-TSS (ENSMUSG00000052533.14) 71 ENSMUSG00000052533.14 ENSMUSG00000052533 ENSMUST00000133421 Nup188 protein_coding Interval_157487 chr8 70846257 70847047 + 0 NA intron (ENSMUSG00000002908.17, intron 6 of 7) protein_coding-intron (ENSMUSG00000002908.17, intron 8 of 9) -10065 ENSMUSG00000002910.11 ENSMUSG00000002910 ENSMUST00000212855 Arrdc2 protein_coding Interval_41563 chr12 116315501 116315827 + 0 NA intron (ENSMUSG00000021171.8, intron 1 of 22) protein_coding-intron (ENSMUSG00000021171.8, intron 1 of 21) -32088 ENSMUSG00000021171.8 ENSMUSG00000021171 ENSMUST00000223150 Esyt2 protein_coding Interval_161934 chr8 123858617 123860153 + 0 NA exon (ENSMUSG00000031971.15, exon 1 of 3) protein_coding-exon (ENSMUSG00000031971.15, exon 1 of 3) 824 ENSMUSG00000031971.15 ENSMUSG00000031971 ENSMUST00000122421 Ccsap protein_coding Interval_82402 chr18 73714485 73716148 + 0 NA intron (ENSMUSG00000117985.1, intron 2 of 2) lincRNA-intron (ENSMUSG00000117985.1, intron 2 of 2) 3988 ENSMUSG00000117985.1 ENSMUSG00000117985 ENSMUST00000237598 Gm32548 lincRNA Interval_13699 chr10 21144720 21145587 + 0 NA promoter-TSS (ENSMUSG00000097923.1) antisense-promoter-TSS (ENSMUSG00000097923.1) 59 ENSMUSG00000097923.1 ENSMUSG00000097923 ENSMUST00000180680 Gm26577 antisense Interval_9351 chr1 156514141 156514473 + 0 NA Intergenic Intergenic -9705 ENSMUSG00000101523.2 ENSMUSG00000101523 ENSMUST00000190422 Csnk2a3 processed_pseudogene Interval_48572 chr13 100406570 100407665 + 0 NA TTS (ENSMUSG00000021640.6) protein_coding-TTS (ENSMUSG00000021640.6) -8448 ENSMUSG00000051723.7 ENSMUSG00000051723 ENSMUST00000060994 Rpl31-ps13 processed_pseudogene Interval_79910 chr18 35856819 35857509 + 0 NA intron (ENSMUSG00000046668.9, intron 2 of 2) protein_coding-intron (ENSMUSG00000046668.9, intron 1 of 2) -5087 ENSMUSG00000117840.1 ENSMUSG00000117840 ENSMUST00000236587 Gm50399 lincRNA Interval_117539 chr4 124503300 124503640 + 0 NA Intergenic Intergenic -52185 ENSMUSG00000084757.7 ENSMUSG00000084757 ENSMUST00000156566 1700057H15Rik lincRNA Interval_32807 chr11 110924960 110925214 + 0 NA Intergenic Intergenic -42946 ENSMUSG00000051497.15 ENSMUSG00000051497 ENSMUST00000178798 Kcnj16 protein_coding Interval_173796 chrX 104364539 104365012 + 0 NA intron (ENSMUSG00000031333.7, intron 1 of 2) protein_coding-intron (ENSMUSG00000031333.7, intron 1 of 15) -16541 ENSMUSG00000083327.1 ENSMUSG00000083327 ENSMUST00000120233 Vcp-rs processed_pseudogene Interval_154972 chr8 25384595 25385474 + 0 NA Intergenic Intergenic -13986 ENSMUSG00000110172.1 ENSMUSG00000110172 ENSMUST00000211376 Gm39147 transcribed_processed_pseudogene Interval_117910 chr4 127000495 127001448 + 0 NA Intergenic Intergenic 17532 ENSMUSG00000081609.1 ENSMUSG00000081609 ENSMUST00000117303 Gm12939 processed_pseudogene Interval_50546 chr14 14893813 14894877 + 0 NA intron (ENSMUSG00000042567.20, intron 23 of 35) protein_coding-intron (ENSMUSG00000042567.20, intron 5 of 12) 90930 ENSMUSG00000042567.20 ENSMUSG00000042567 ENSMUST00000136826 Nek10 protein_coding Interval_48683 chr13 101160152 101160375 + 0 NA Intergenic Intergenic -71864 ENSMUSG00000114590.1 ENSMUSG00000114590 ENSMUST00000223648 5930438M14Rik lincRNA Interval_171232 chr9 115445437 115447210 + 0 NA Intergenic Intergenic -7742 ENSMUSG00000074034.1 ENSMUSG00000074034 ENSMUST00000075898 Gm5921 processed_pseudogene Interval_68498 chr16 78245817 78246205 + 0 NA Intergenic Intergenic -5042 ENSMUSG00000116798.1 ENSMUSG00000116798 ENSMUST00000231924 Gm49591 processed_pseudogene Interval_113590 chr4 56878929 56879678 + 0 NA TTS (ENSMUSG00000055296.14) protein_coding-TTS (ENSMUSG00000055296.14) 15995 ENSMUSG00000065544.1 ENSMUSG00000065544 ENSMUST00000083610 Mir32 miRNA Interval_164760 chr9 41228652 41229611 + 0 NA exon (ENSMUSG00000111308.1, exon 1 of 1) TEC-exon (ENSMUSG00000111308.1, exon 1 of 1) 249 ENSMUSG00000111308.1 ENSMUSG00000111308 ENSMUST00000213107 Gm48710 TEC Interval_164314 chr9 35257336 35258208 + 0 NA intron (ENSMUSG00000050471.17, intron 1 of 6) protein_coding-intron (ENSMUSG00000050471.17, intron 1 of 7) 9983 ENSMUSG00000050471.17 ENSMUSG00000050471 ENSMUST00000125124 Fam118b protein_coding Interval_4814 chr1 79664811 79665530 + 0 NA intron (ENSMUSG00000054702.14, intron 1 of 4) protein_coding-intron (ENSMUSG00000054702.14, intron 1 of 4) 6802 ENSMUSG00000054702.14 ENSMUSG00000054702 ENSMUST00000160706 Ap1s3 protein_coding Interval_165653 chr9 50707774 50708386 + 0 NA intron (ENSMUSG00000032064.17, intron 2 of 19) protein_coding-intron (ENSMUSG00000032064.17, intron 2 of 19) -10309 ENSMUSG00000032064.17 ENSMUSG00000032064 ENSMUST00000118707 Dixdc1 protein_coding Interval_75616 chr17 69348878 69349581 + 0 NA Intergenic Intergenic 33235 ENSMUSG00000117323.1 ENSMUSG00000117323 ENSMUST00000232963 Gm36487 lincRNA Interval_136385 chr6 54017781 54018439 + 0 NA TTS (ENSMUSG00000108060.2) processed_transcript-TTS (ENSMUSG00000108060.2) 39381 ENSMUSG00000108060.2 ENSMUSG00000108060 ENSMUST00000203047 4921529L05Rik processed_transcript Interval_167956 chr9 74952405 74953749 + 0 NA promoter-TSS (ENSMUSG00000034858.16) protein_coding-promoter-TSS (ENSMUSG00000034858.16) 193 ENSMUSG00000034858.16 ENSMUSG00000034858 ENSMUST00000081746 Fam214a protein_coding Interval_39415 chr12 87278152 87280218 + 0 NA TTS (ENSMUSG00000050671.12) protein_coding-TTS (ENSMUSG00000050671.12) 7888 ENSMUSG00000050671.12 ENSMUSG00000050671 ENSMUST00000145714 Ism2 protein_coding Interval_99858 chr2 165354844 165355240 + 0 NA intron (ENSMUSG00000056824.15, intron 5 of 5) protein_coding-intron (ENSMUSG00000056824.15, intron 3 of 3) 13681 ENSMUSG00000056824.15 ENSMUSG00000056824 ENSMUST00000141140 Zfp663 protein_coding Interval_159502 chr8 95121568 95122021 + 0 NA intron (ENSMUSG00000110517.1, intron 1 of 1) protein_coding-intron (ENSMUSG00000031788.14, intron 3 of 19) -4872 ENSMUSG00000110428.1 ENSMUSG00000110428 ENSMUST00000212199 Gm45812 antisense Interval_149424 chr7 98395270 98396071 + 0 NA intron (ENSMUSG00000108449.1, intron 3 of 4) lincRNA-intron (ENSMUSG00000108449.1, intron 3 of 4) 19954 ENSMUSG00000108449.1 ENSMUSG00000108449 ENSMUST00000206249 Gm44507 lincRNA Interval_65931 chr16 30320801 30321472 + 0 NA intron (ENSMUSG00000022533.14, intron 4 of 4) protein_coding-intron (ENSMUSG00000022533.14, intron 32 of 32) -10357 ENSMUSG00000047953.7 ENSMUSG00000047953 ENSMUST00000061190 Gp5 protein_coding Interval_157983 chr8 77538206 77538911 + 0 NA Intergenic Intergenic -10896 ENSMUSG00000037134.17 ENSMUSG00000037134 ENSMUST00000156753 Prmt9 protein_coding Interval_125105 chr5 64504964 64506663 + 0 NA Intergenic Intergenic 28805 ENSMUSG00000105352.4 ENSMUSG00000105352 ENSMUST00000196829 C030018K13Rik lincRNA Interval_75783 chr17 71334989 71335227 + 0 NA intron (ENSMUSG00000117199.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000117199.1, intron 2 of 2) 6658 ENSMUSG00000117199.1 ENSMUSG00000117199 ENSMUST00000232737 Gm4566 lincRNA Interval_43726 chr13 35782666 35783512 + 0 NA intron (ENSMUSG00000059288.14, intron 1 of 2) protein_coding-intron (ENSMUSG00000059288.14, intron 3 of 9) -6193 ENSMUSG00000114373.1 ENSMUSG00000114373 ENSMUST00000224745 Gm48708 antisense Interval_95983 chr2 118925913 118927303 + 0 NA promoter-TSS (ENSMUSG00000074916.5) protein_coding-promoter-TSS (ENSMUSG00000074916.5) 94 ENSMUSG00000074916.5 ENSMUSG00000074916 ENSMUST00000110837 Chst14 protein_coding Interval_157924 chr8 76206103 76206391 + 0 NA intron (ENSMUSG00000110485.1, intron 1 of 9) lincRNA-intron (ENSMUSG00000110485.1, intron 1 of 9) 68203 ENSMUSG00000064709.1 ENSMUSG00000064709 ENSMUST00000082775 Gm22509 snRNA Interval_45891 chr13 58843629 58843976 + 0 NA intron (ENSMUSG00000055254.15, intron 4 of 11) protein_coding-intron (ENSMUSG00000055254.15, intron 5 of 17) 7987 ENSMUSG00000055254.15 ENSMUSG00000055254 ENSMUST00000223636 Ntrk2 protein_coding Interval_42645 chr13 17686263 17687218 + 0 NA intron (ENSMUSG00000055137.7, intron 1 of 1) protein_coding-intron (ENSMUSG00000055137.7, intron 1 of 13) 7997 ENSMUSG00000055137.7 ENSMUSG00000055137 ENSMUST00000221467 Sugct protein_coding Interval_25255 chr11 45909444 45909681 + 0 NA exon (ENSMUSG00000006169.20, exon 12 of 12) protein_coding-exon (ENSMUSG00000006169.20, exon 12 of 12) 27165 ENSMUSG00000006169.20 ENSMUSG00000006169 ENSMUST00000133715 Clint1 protein_coding Interval_13511 chr10 18904197 18904519 + 0 NA Intergenic Intergenic -17329 ENSMUSG00000111318.1 ENSMUSG00000111318 ENSMUST00000214387 Gm48483 lincRNA Interval_52213 chr14 40679080 40679856 + 0 NA Intergenic Intergenic -67759 ENSMUSG00000114933.1 ENSMUSG00000114933 ENSMUST00000225171 Gm48040 processed_pseudogene Interval_105673 chr3 88501792 88503629 + 0 NA TTS (ENSMUSG00000028063.15) protein_coding-TTS (ENSMUSG00000028063.15) -19846 ENSMUSG00000028063.15 ENSMUSG00000028063 ENSMUST00000149068 Lmna protein_coding Interval_159020 chr8 88862412 88862676 + 0 NA exon (ENSMUSG00000109778.1, exon 1 of 1) TEC-exon (ENSMUSG00000109778.1, exon 1 of 1) 530 ENSMUSG00000109778.1 ENSMUSG00000109778 ENSMUST00000211407 Gm45504 TEC Interval_79091 chr18 24459244 24460067 + 0 NA Intergenic Intergenic -11195 ENSMUSG00000024273.8 ENSMUSG00000024273 ENSMUST00000097646 2700062C07Rik protein_coding Interval_165481 chr9 48593698 48594104 + 0 NA intron (ENSMUSG00000032271.13, intron 2 of 3) protein_coding-intron (ENSMUSG00000032271.13, intron 2 of 2) 3474 ENSMUSG00000032271.13 ENSMUSG00000032271 ENSMUST00000128076 Nnmt protein_coding Interval_90852 chr2 32965964 32968230 + 0 NA Intergenic Intergenic 3806 ENSMUSG00000065124.1 ENSMUSG00000065124 ENSMUST00000083190 Snora65 snoRNA Interval_172733 chrX 48054190 48054858 + 0 NA Intergenic Intergenic -19671 ENSMUSG00000037010.7 ENSMUSG00000037010 ENSMUST00000039026 Apln protein_coding Interval_101500 chr2 182002971 182003157 + 0 NA exon (ENSMUSG00000098505.3, exon 6 of 6) protein_coding-exon (ENSMUSG00000098505.3, exon 6 of 6) 11935 ENSMUSG00000098505.3 ENSMUSG00000098505 ENSMUST00000184507 Gm14496 protein_coding Interval_78936 chr18 22186328 22186776 + 0 NA Intergenic Intergenic -15110 ENSMUSG00000024306.13 ENSMUSG00000024306 ENSMUST00000234661 Ccdc178 protein_coding Interval_105055 chr3 80527145 80527329 + 0 NA Intergenic Intergenic -127571 ENSMUSG00000087123.1 ENSMUSG00000087123 ENSMUST00000145087 Gm6706 processed_pseudogene Interval_79511 chr18 32559397 32560488 + 0 NA promoter-TSS (ENSMUSG00000090523.2) protein_coding-promoter-TSS (ENSMUSG00000090523.2) 92 ENSMUSG00000090523.2 ENSMUSG00000090523 ENSMUST00000172434 Gypc protein_coding Interval_121355 chr4 155201879 155202474 + 0 NA intron (ENSMUSG00000029050.15, intron 2 of 7) protein_coding-intron (ENSMUSG00000029050.15, intron 1 of 6) -13880 ENSMUSG00000029050.15 ENSMUSG00000029050 ENSMUST00000030917 Ski protein_coding Interval_46533 chr13 66899448 66900151 + 0 NA TTS (ENSMUSG00000021520.4) protein_coding-TTS (ENSMUSG00000021520.4) 2987 ENSMUSG00000021520.4 ENSMUSG00000021520 ENSMUST00000174606 Uqcrb protein_coding Interval_83879 chr19 5302554 5302913 + 0 NA intron (ENSMUSG00000047658.6, intron 2 of 2) protein_coding-intron (ENSMUSG00000047658.6, intron 2 of 2) 4402 ENSMUSG00000047658.6 ENSMUSG00000047658 ENSMUST00000061169 Gal3st3 protein_coding Interval_97588 chr2 140176765 140177038 + 0 NA intron (ENSMUSG00000027384.6, intron 2 of 10) protein_coding-intron (ENSMUSG00000027384.6, intron 2 of 10) 5871 ENSMUSG00000027384.6 ENSMUSG00000027384 ENSMUST00000125913 Ndufaf5 protein_coding Interval_172474 chrX 20875360 20875861 + 0 NA TTS (ENSMUSG00000001131.11) protein_coding-TTS (ENSMUSG00000001131.11) 5444 ENSMUSG00000001131.11 ENSMUSG00000001131 ENSMUST00000009530 Timp1 protein_coding Interval_150246 chr7 108948657 108951682 + 0 NA promoter-TSS (ENSMUSG00000031028.14) protein_coding-promoter-TSS (ENSMUSG00000031028.14) -488 ENSMUSG00000031028.14 ENSMUSG00000031028 ENSMUST00000147943 Tub protein_coding Interval_351 chr1 4447516 4448651 + 0 NA Intergenic Intergenic -38842 ENSMUSG00000025900.13 ENSMUSG00000025900 ENSMUST00000027032 Rp1 protein_coding Interval_6755 chr1 119255466 119256468 + 0 NA Intergenic Intergenic -13214 ENSMUSG00000100767.1 ENSMUSG00000100767 ENSMUST00000186012 Gm3508 processed_pseudogene Interval_59888 chr15 60839497 60840430 + 0 NA intron (ENSMUSG00000072568.4, intron 1 of 1) protein_coding-intron (ENSMUSG00000072568.4, intron 1 of 1) 13815 ENSMUSG00000072568.4 ENSMUSG00000072568 ENSMUST00000186536 Lratd2 protein_coding Interval_57273 chr15 8279219 8280472 + 0 NA Intergenic Intergenic 56702 ENSMUSG00000039801.7 ENSMUSG00000039801 ENSMUST00000128772 Cplane1 protein_coding Interval_59342 chr15 51790218 51790524 + 0 NA intron (ENSMUSG00000022312.11, intron 3 of 4) protein_coding-intron (ENSMUSG00000022312.11, intron 5 of 7) 45886 ENSMUSG00000022312.11 ENSMUSG00000022312 ENSMUST00000228583 Eif3h protein_coding Interval_167630 chr9 71361219 71362852 + 0 NA Intergenic Intergenic -82850 ENSMUSG00000111181.1 ENSMUSG00000111181 ENSMUST00000214975 Gm48124 processed_pseudogene Interval_90559 chr2 31141045 31142738 + 0 NA promoter-TSS (ENSMUSG00000075415.13) protein_coding-promoter-TSS (ENSMUSG00000075415.13) 10400 ENSMUSG00000087269.1 ENSMUSG00000087269 ENSMUST00000133550 D330023K18Rik processed_transcript Interval_174332 chrX 144557126 144557933 + 0 NA intron (ENSMUSG00000041710.4, intron 1 of 5) protein_coding-intron (ENSMUSG00000041710.4, intron 1 of 10) -1192 ENSMUSG00000082106.3 ENSMUSG00000082106 ENSMUST00000117991 Mageb16-ps1 processed_pseudogene Interval_96934 chr2 129674812 129675600 + 0 NA Intergenic Intergenic 24638 ENSMUSG00000027400.11 ENSMUSG00000027400 ENSMUST00000152113 Pdyn protein_coding Interval_84665 chr19 14846835 14847284 + 0 NA Intergenic Intergenic 113707 ENSMUSG00000063586.1 ENSMUSG00000063586 ENSMUST00000072982 Gm5513 processed_pseudogene Interval_64583 chr16 13486421 13486681 + 0 NA Intergenic Intergenic -15371 ENSMUSG00000099214.1 ENSMUSG00000099214 ENSMUST00000183990 Mir6365 miRNA Interval_27992 chr11 72029109 72029580 + 0 NA exon (ENSMUSG00000040554.10, exon 6 of 6) protein_coding-exon (ENSMUSG00000040554.10, exon 6 of 6) 6589 ENSMUSG00000080577.1 ENSMUSG00000080577 ENSMUST00000116927 Gm23226 snRNA Interval_54917 chr14 76221137 76222926 + 0 NA Intergenic Intergenic 15514 ENSMUSG00000095427.2 ENSMUSG00000095427 ENSMUST00000095471 Rps2-ps6 processed_pseudogene Interval_29316 chr11 82889971 82890790 + 0 NA exon (ENSMUSG00000018841.17, exon 1 of 10) protein_coding-exon (ENSMUSG00000018841.17, exon 1 of 10) 209 ENSMUSG00000018841.17 ENSMUSG00000018841 ENSMUST00000100718 Rad51d protein_coding Interval_47094 chr13 75685198 75686406 + 0 NA Intergenic Intergenic -6170 ENSMUSG00000077337.1 ENSMUSG00000077337 ENSMUST00000104149 Gm23012 snoRNA Interval_77677 chr17 94072196 94072535 + 0 NA Intergenic Intergenic 59906 ENSMUSG00000117543.1 ENSMUSG00000117543 ENSMUST00000235005 Gm50004 processed_pseudogene Interval_163407 chr9 21290698 21291809 + 0 NA promoter-TSS (ENSMUSG00000096472.2) protein_coding-promoter-TSS (ENSMUSG00000096472.2) 55 ENSMUSG00000096472.2 ENSMUSG00000096472 ENSMUST00000213407 Cdkn2d protein_coding Interval_105721 chr3 88913387 88914666 + 0 NA promoter-TSS (ENSMUSG00000068922.14) protein_coding-promoter-TSS (ENSMUSG00000068922.14) -123 ENSMUSG00000068922.14 ENSMUSG00000068922 ENSMUST00000128988 Msto1 protein_coding Interval_113430 chr4 54958060 54958308 + 0 NA intron (ENSMUSG00000060206.11, intron 1 of 12) protein_coding-intron (ENSMUSG00000060206.11, intron 1 of 12) 13136 ENSMUSG00000060206.11 ENSMUSG00000060206 ENSMUST00000079605 Zfp462 protein_coding Interval_146164 chr7 44455970 44457269 + 0 NA intron (ENSMUSG00000047085.14, intron 2 of 2) protein_coding-intron (ENSMUSG00000047085.14, intron 2 of 2) -10699 ENSMUSG00000038704.12 ENSMUSG00000038704 ENSMUST00000207591 Aspdh protein_coding Interval_169676 chr9 100282408 100282791 + 0 NA Intergenic Intergenic 40925 ENSMUSG00000101042.1 ENSMUSG00000101042 ENSMUST00000187644 Gm28167 lincRNA Interval_67015 chr16 40400183 40400532 + 0 NA intron (ENSMUSG00000061080.11, intron 2 of 2) protein_coding-intron (ENSMUSG00000061080.11, intron 1 of 8) -32420 ENSMUSG00000098472.1 ENSMUSG00000098472 ENSMUST00000184367 Gm27887 miRNA Interval_147064 chr7 60487922 60488260 + 0 NA Intergenic Intergenic -155800 ENSMUSG00000109447.1 ENSMUSG00000109447 ENSMUST00000208725 Gm3198 processed_pseudogene Interval_70107 chr17 5377799 5378313 + 0 NA Intergenic Intergenic -10707 ENSMUSG00000101133.1 ENSMUSG00000101133 ENSMUST00000190732 Gm29050 antisense Interval_137417 chr6 72136435 72136806 + 0 NA intron (ENSMUSG00000056091.12, intron 3 of 3) protein_coding-intron (ENSMUSG00000056091.12, intron 3 of 6) -13680 ENSMUSG00000108709.1 ENSMUSG00000108709 ENSMUST00000205571 4933431G14Rik antisense Interval_137278 chr6 70986287 70987634 + 0 NA Intergenic Intergenic 30429 ENSMUSG00000055874.6 ENSMUSG00000055874 ENSMUST00000069634 Foxi3 protein_coding Interval_62318 chr15 90072230 90072830 + 0 NA Intergenic Intergenic -1981 ENSMUSG00000116231.1 ENSMUSG00000116231 ENSMUST00000230688 Gm36330 lincRNA Interval_151299 chr7 120811710 120811909 + 0 NA promoter-TSS (ENSMUSG00000109392.1) protein_coding-promoter-TSS (ENSMUSG00000109392.1) -556 ENSMUSG00000109392.1 ENSMUSG00000109392 ENSMUST00000208668 Gm5737 protein_coding Interval_66519 chr16 34725715 34726730 + 0 NA Intergenic Intergenic 35512 ENSMUSG00000022833.7 ENSMUSG00000022833 ENSMUST00000232341 Ccdc14 protein_coding Interval_153685 chr8 4594062 4594930 + 0 NA Intergenic Intergenic -18671 ENSMUSG00000058748.9 ENSMUSG00000058748 ENSMUST00000073201 Zfp958 protein_coding Interval_166074 chr9 56368475 56369165 + 0 NA intron (ENSMUSG00000074305.9, intron 2 of 6) protein_coding-intron (ENSMUSG00000074305.9, intron 2 of 6) 47246 ENSMUSG00000102419.1 ENSMUSG00000102419 ENSMUST00000194281 Gm36940 TEC Interval_7608 chr1 132492189 132493110 + 0 NA exon (ENSMUSG00000026439.14, exon 7 of 15) protein_coding-exon (ENSMUSG00000026439.14, exon 7 of 15) -14240 ENSMUSG00000048174.2 ENSMUSG00000048174 ENSMUST00000188789 Tmem81 protein_coding Interval_30260 chr11 92249361 92250488 + 0 NA Intergenic Intergenic -225511 ENSMUSG00000093113.1 ENSMUSG00000093113 ENSMUST00000175372 Gm22702 miRNA Interval_118151 chr4 129247880 129249048 + 0 NA promoter-TSS (ENSMUSG00000050390.12) protein_coding-promoter-TSS (ENSMUSG00000050390.12) -13501 ENSMUSG00000087575.7 ENSMUSG00000087575 ENSMUST00000150171 Gm12976 lincRNA Interval_82922 chr18 79220419 79221097 + 0 NA exon (ENSMUSG00000117936.1, exon 4 of 4) transcribed_processed_pseudogene-exon (ENSMUSG00000117936.1, exon 4 of 4) 23125 ENSMUSG00000117936.1 ENSMUSG00000117936 ENSMUST00000236903 Gm18978 transcribed_processed_pseudogene Interval_127545 chr5 105022212 105022403 + 0 NA promoter-TSS (ENSMUSG00000034438.16) protein_coding-promoter-TSS (ENSMUSG00000034438.16) -243 ENSMUSG00000034438.16 ENSMUSG00000034438 ENSMUST00000112718 Gbp8 protein_coding Interval_102660 chr3 29033232 29033760 + 0 NA Intergenic Intergenic -48804 ENSMUSG00000063600.14 ENSMUSG00000063600 ENSMUST00000140288 Egfem1 protein_coding Interval_79208 chr18 25667987 25668516 + 0 NA intron (ENSMUSG00000024268.16, intron 2 of 5) protein_coding-intron (ENSMUSG00000024268.16, intron 2 of 12) -45519 ENSMUSG00000114511.1 ENSMUSG00000114511 ENSMUST00000224766 0710001A04Rik antisense Interval_74330 chr17 49013981 49014593 + 0 NA intron (ENSMUSG00000040490.4, intron 1 of 2) protein_coding-intron (ENSMUSG00000040490.4, intron 1 of 2) 81908 ENSMUSG00000040490.4 ENSMUSG00000040490 ENSMUST00000046254 Lrfn2 protein_coding Interval_42911 chr13 21300846 21301221 + 0 NA Intergenic Intergenic -4315 ENSMUSG00000084414.3 ENSMUSG00000084414 ENSMUST00000117685 Gm11270 processed_pseudogene Interval_14949 chr10 41403724 41404262 + 0 NA promoter-TSS (ENSMUSG00000111315.1) processed_pseudogene-promoter-TSS (ENSMUSG00000111315.1) -162 ENSMUSG00000111315.1 ENSMUSG00000111315 ENSMUST00000214384 Gm47473 processed_pseudogene Interval_73631 chr17 41806648 41806939 + 0 NA Intergenic Intergenic -143105 ENSMUSG00000117001.1 ENSMUSG00000117001 ENSMUST00000232972 Gm49858 processed_pseudogene Interval_99149 chr2 157498415 157498676 + 0 NA Intergenic Intergenic 23483 ENSMUSG00000081740.3 ENSMUSG00000081740 ENSMUST00000117142 Gm14279 processed_pseudogene Interval_165722 chr9 51776834 51777827 + 0 NA intron (ENSMUSG00000053199.13, intron 1 of 14) protein_coding-intron (ENSMUSG00000053199.13, intron 1 of 14) -54442 ENSMUSG00000053199.13 ENSMUSG00000053199 ENSMUST00000149754 Arhgap20 protein_coding Interval_36234 chr12 40082269 40083067 + 0 NA intron (ENSMUSG00000002565.16, intron 5 of 13) protein_coding-intron (ENSMUSG00000002565.16, intron 5 of 15) 44569 ENSMUSG00000086315.1 ENSMUSG00000086315 ENSMUST00000135883 Arl4aos antisense Interval_163807 chr9 26519425 26519918 + 0 NA exon (ENSMUSG00000111066.1, exon 4 of 4) lincRNA-exon (ENSMUSG00000111066.1, exon 4 of 4) 30282 ENSMUSG00000111066.1 ENSMUSG00000111066 ENSMUST00000216806 Gm30313 lincRNA Interval_116047 chr4 107218337 107218546 + 0 NA TTS (ENSMUSG00000070877.4) protein_coding-TTS (ENSMUSG00000070877.4) 9261 ENSMUSG00000070877.4 ENSMUSG00000070877 ENSMUST00000094916 Ldlrad1 protein_coding Interval_113685 chr4 57607416 57608065 + 0 NA intron (ENSMUSG00000090053.9, intron 1 of 6) protein_coding-intron (ENSMUSG00000089945.13, intron 1 of 10) -30083 ENSMUSG00000089945.13 ENSMUSG00000089945 ENSMUST00000150412 Pakap protein_coding Interval_98177 chr2 149387914 149388120 + 0 NA Intergenic Intergenic -17316 ENSMUSG00000033156.9 ENSMUSG00000033156 ENSMUST00000109939 Cst10 protein_coding Interval_139413 chr6 99950550 99951103 + 0 NA intron (ENSMUSG00000107528.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000107528.1, intron 1 of 2) -19277 ENSMUSG00000107528.1 ENSMUSG00000107528 ENSMUST00000204919 Gm44442 lincRNA Interval_59066 chr15 42951781 42952670 + 0 NA Intergenic Intergenic 218601 ENSMUSG00000051920.7 ENSMUSG00000051920 ENSMUST00000226402 Rspo2 protein_coding Interval_144599 chr7 26778260 26778764 + 0 NA Intergenic Intergenic 11957 ENSMUSG00000066704.6 ENSMUSG00000066704 ENSMUST00000138018 Cyp2b19 protein_coding Interval_136599 chr6 56452000 56452772 + 0 NA intron (ENSMUSG00000004347.17, intron 3 of 19) protein_coding-intron (ENSMUSG00000004347.17, intron 2 of 18) 131460 ENSMUSG00000096087.1 ENSMUSG00000096087 ENSMUST00000104123 Gm24709 snoRNA Interval_130118 chr5 124388079 124388507 + 0 NA intron (ENSMUSG00000038095.15, intron 21 of 31) protein_coding-intron (ENSMUSG00000038095.15, intron 21 of 31) 17436 ENSMUSG00000038095.15 ENSMUSG00000038095 ENSMUST00000197974 Sbno1 protein_coding Interval_122348 chr5 21602754 21603808 + 0 NA intron (ENSMUSG00000048520.16, intron 7 of 18) protein_coding-intron (ENSMUSG00000048520.16, intron 7 of 19) 4541 ENSMUSG00000106135.1 ENSMUSG00000106135 ENSMUST00000197353 Gm6543 processed_pseudogene Interval_43487 chr13 31800674 31802141 + 0 NA TTS (ENSMUSG00000086144.2) antisense-TTS (ENSMUSG00000086144.2) 3868 ENSMUSG00000086144.2 ENSMUSG00000086144 ENSMUST00000154678 Gm11379 antisense Interval_135438 chr6 39368656 39368855 + 0 NA intron (ENSMUSG00000029924.12, intron 1 of 2) protein_coding-intron (ENSMUSG00000029924.12, intron 1 of 14) 8902 ENSMUSG00000029924.12 ENSMUSG00000029924 ENSMUST00000202785 Slc37a3 protein_coding Interval_103071 chr3 34924237 34926006 + 0 NA Intergenic Intergenic -2470 ENSMUSG00000098862.1 ENSMUSG00000098862 ENSMUST00000183357 Mir6378 miRNA Interval_63359 chr15 100533126 100533502 + 0 NA intron (ENSMUSG00000009733.9, intron 1 of 2) protein_coding-intron (ENSMUSG00000009733.9, intron 2 of 15) -21070 ENSMUSG00000009733.9 ENSMUSG00000009733 ENSMUST00000231138 Tfcp2 protein_coding Interval_74990 chr17 59087309 59087996 + 0 NA Intergenic Intergenic 70338 ENSMUSG00000086594.2 ENSMUSG00000086594 ENSMUST00000167453 Nudt12os antisense Interval_9772 chr1 162008729 162008931 + 0 NA intron (ENSMUSG00000040265.16, intron 8 of 8) protein_coding-intron (ENSMUSG00000040265.16, intron 19 of 19) 3861 ENSMUSG00000090260.1 ENSMUSG00000090260 ENSMUST00000160555 2810442N19Rik antisense Interval_123807 chr5 35678589 35679854 + 0 NA promoter-TSS (ENSMUSG00000029096.15) protein_coding-promoter-TSS (ENSMUSG00000029096.15) -127 ENSMUSG00000029096.15 ENSMUSG00000029096 ENSMUST00000200810 Htra3 protein_coding Interval_111519 chr4 22371657 22371955 + 0 NA intron (ENSMUSG00000040410.14, intron 1 of 8) protein_coding-intron (ENSMUSG00000040410.14, intron 1 of 8) 14246 ENSMUSG00000040410.14 ENSMUSG00000040410 ENSMUST00000184582 Fbxl4 protein_coding Interval_30883 chr11 97050193 97051064 + 0 NA promoter-TSS (ENSMUSG00000038534.19) protein_coding-promoter-TSS (ENSMUSG00000038534.19) -192 ENSMUSG00000038534.19 ENSMUSG00000038534 ENSMUST00000143360 Osbpl7 protein_coding Interval_47321 chr13 81308252 81308529 + 0 NA intron (ENSMUSG00000069170.14, intron 21 of 27) protein_coding-intron (ENSMUSG00000069170.14, intron 83 of 89) 43236 ENSMUSG00000069170.14 ENSMUSG00000069170 ENSMUST00000132045 Adgrv1 protein_coding Interval_162282 chr8 126735247 126736632 + 0 NA Intergenic Intergenic 22395 ENSMUSG00000110626.1 ENSMUSG00000110626 ENSMUST00000212695 Gm45805 lincRNA Interval_25090 chr11 43783678 43784632 + 0 NA intron (ENSMUSG00000050541.14, intron 1 of 1) protein_coding-intron (ENSMUSG00000050541.14, intron 4 of 4) -36163 ENSMUSG00000041278.10 ENSMUSG00000041278 ENSMUST00000147984 Ttc1 protein_coding Interval_82519 chr18 74850326 74850599 + 0 NA Intergenic Intergenic 55972 ENSMUSG00000088144.1 ENSMUSG00000088144 ENSMUST00000157519 Gm24559 snoRNA Interval_105769 chr3 89242653 89243920 + 0 NA intron (ENSMUSG00000042766.17, intron 3 of 10) protein_coding-intron (ENSMUSG00000042766.17, intron 3 of 9) 2586 ENSMUSG00000042766.17 ENSMUSG00000042766 ENSMUST00000125952 Trim46 protein_coding Interval_151338 chr7 121203897 121204728 + 0 NA Intergenic Intergenic 19682 ENSMUSG00000108502.1 ENSMUSG00000108502 ENSMUST00000206527 Gm9240 processed_pseudogene Interval_60420 chr15 73639970 73640831 + 0 NA intron (ENSMUSG00000079020.9, intron 1 of 1) protein_coding-intron (ENSMUSG00000079020.9, intron 1 of 1) -5452 ENSMUSG00000099958.1 ENSMUSG00000099958 ENSMUST00000188278 1700010B13Rik processed_transcript Interval_30012 chr11 88683023 88683806 + 0 NA intron (ENSMUSG00000069769.13, intron 5 of 5) protein_coding-intron (ENSMUSG00000069769.13, intron 5 of 13) -35231 ENSMUSG00000087574.1 ENSMUSG00000087574 ENSMUST00000125967 C030037D09Rik lincRNA Interval_88992 chr2 14085763 14087244 + 0 NA intron (ENSMUSG00000026718.17, intron 1 of 6) protein_coding-intron (ENSMUSG00000026718.17, intron 1 of 12) 12281 ENSMUSG00000026718.17 ENSMUSG00000026718 ENSMUST00000131734 Stam protein_coding Interval_50875 chr14 20388392 20389194 + 0 NA promoter-TSS (ENSMUSG00000021811.7) protein_coding-promoter-TSS (ENSMUSG00000021811.7) 83 ENSMUSG00000021811.7 ENSMUSG00000021811 ENSMUST00000223844 Dnajc9 protein_coding Interval_84044 chr19 6931580 6932860 + 0 NA intron (ENSMUSG00000024957.9, intron 1 of 1) protein_coding-intron (ENSMUSG00000024957.9, intron 2 of 6) -5183 ENSMUSG00000024957.9 ENSMUSG00000024957 ENSMUST00000236443 Kcnk4 protein_coding Interval_6297 chr1 105630460 105630938 + 0 NA intron (ENSMUSG00000056536.14, intron 2 of 2) protein_coding-intron (ENSMUSG00000056536.14, intron 12 of 28) 14957 ENSMUSG00000101656.1 ENSMUSG00000101656 ENSMUST00000187782 Gm8004 processed_pseudogene Interval_104081 chr3 58427085 58427349 + 0 NA intron (ENSMUSG00000027806.9, intron 1 of 2) protein_coding-intron (ENSMUSG00000027806.9, intron 1 of 3) 11339 ENSMUSG00000027806.9 ENSMUSG00000027806 ENSMUST00000196049 Tsc22d2 protein_coding Interval_66224 chr16 32419267 32420461 + 0 NA promoter-TSS (ENSMUSG00000014075.15) protein_coding-promoter-TSS (ENSMUSG00000014075.15) 69 ENSMUSG00000014075.15 ENSMUSG00000014075 ENSMUST00000131204 Tctex1d2 protein_coding Interval_60418 chr15 73632856 73633080 + 0 NA intron (ENSMUSG00000079020.9, intron 1 of 1) protein_coding-intron (ENSMUSG00000079020.9, intron 1 of 1) -12884 ENSMUSG00000099958.1 ENSMUSG00000099958 ENSMUST00000188278 1700010B13Rik processed_transcript Interval_88878 chr2 11977777 11978301 + 0 NA Intergenic Intergenic 77957 ENSMUSG00000103542.1 ENSMUSG00000103542 ENSMUST00000193884 Gm34768 unprocessed_pseudogene Interval_138252 chr6 86623623 86625180 + 0 NA Intergenic Intergenic -3763 ENSMUSG00000033508.7 ENSMUSG00000033508 ENSMUST00000043400 Asprv1 protein_coding Interval_150327 chr7 109628942 109630530 + 0 NA intron (ENSMUSG00000031024.13, intron 1 of 3) protein_coding-intron (ENSMUSG00000031024.13, intron 1 of 3) -12983 ENSMUSG00000031024.13 ENSMUSG00000031024 ENSMUST00000208734 Denn2b protein_coding Interval_88367 chr2 4492162 4493469 + 0 NA intron (ENSMUSG00000026657.17, intron 5 of 24) protein_coding-intron (ENSMUSG00000026657.17, intron 4 of 23) -26145 ENSMUSG00000086874.1 ENSMUSG00000086874 ENSMUST00000139479 Gm13175 antisense Interval_47328 chr13 81452121 81453355 + 0 NA intron (ENSMUSG00000069170.14, intron 59 of 89) protein_coding-intron (ENSMUSG00000069170.14, intron 59 of 89) -48064 ENSMUSG00000114454.1 ENSMUSG00000114454 ENSMUST00000224788 Gm48567 processed_pseudogene Interval_154432 chr8 16686058 16686469 + 0 NA intron (ENSMUSG00000060924.15, intron 5 of 10) protein_coding-intron (ENSMUSG00000060924.15, intron 5 of 69) -65056 ENSMUSG00000110132.1 ENSMUSG00000110132 ENSMUST00000209240 Gm45394 TEC Interval_106840 chr3 101243803 101244911 + 0 NA Intergenic Intergenic 10897 ENSMUSG00000083546.1 ENSMUSG00000083546 ENSMUST00000120257 Tpt1-ps1 processed_pseudogene Interval_55191 chr14 79212681 79213910 + 0 NA exon (ENSMUSG00000071262.10, exon 2 of 2) protein_coding-exon (ENSMUSG00000071262.10, exon 2 of 2) -14105 ENSMUSG00000115111.1 ENSMUSG00000115111 ENSMUST00000228380 Gm4632 antisense Interval_19030 chr10 93915119 93915335 + 0 NA TTS (ENSMUSG00000087798.1) snoRNA-TTS (ENSMUSG00000087798.1) 1109 ENSMUSG00000087798.1 ENSMUSG00000087798 ENSMUST00000157173 Gm25962 snoRNA Interval_83029 chr18 80608528 80609718 + 0 NA promoter-TSS (ENSMUSG00000033016.16) protein_coding-promoter-TSS (ENSMUSG00000033016.16) -148 ENSMUSG00000033016.16 ENSMUSG00000033016 ENSMUST00000236711 Nfatc1 protein_coding Interval_12561 chr10 3172285 3173997 + 0 NA Intergenic Intergenic -2879 ENSMUSG00000111625.1 ENSMUSG00000111625 ENSMUST00000213719 Gm48097 processed_pseudogene Interval_90451 chr2 30537054 30537457 + 0 NA intron (ENSMUSG00000085275.1, intron 2 of 2) lincRNA-intron (ENSMUSG00000085275.1, intron 2 of 2) 2526 ENSMUSG00000085275.1 ENSMUSG00000085275 ENSMUST00000145413 Gm14487 lincRNA Interval_8395 chr1 138787682 138789753 + 0 NA Intergenic Intergenic 53737 ENSMUSG00000019230.14 ENSMUSG00000019230 ENSMUST00000194557 Lhx9 protein_coding Interval_82781 chr18 77046766 77047655 + 0 NA promoter-TSS (ENSMUSG00000025420.13) protein_coding-promoter-TSS (ENSMUSG00000025420.13) 77 ENSMUSG00000025420.13 ENSMUSG00000025420 ENSMUST00000123650 Katnal2 protein_coding Interval_65100 chr16 19120631 19120871 + 0 NA Intergenic Intergenic -35251 ENSMUSG00000076934.2 ENSMUSG00000076934 ENSMUST00000103746 Iglv1 IG_V_gene Interval_65793 chr16 28893089 28893914 + 0 NA intron (ENSMUSG00000051065.9, intron 1 of 1) protein_coding-intron (ENSMUSG00000051065.9, intron 1 of 1) -57134 ENSMUSG00000051065.9 ENSMUSG00000051065 ENSMUST00000232571 Mb21d2 protein_coding Interval_146402 chr7 45700010 45701227 + 0 NA promoter-TSS (ENSMUSG00000003273.14) protein_coding-promoter-TSS (ENSMUSG00000003273.14) -417 ENSMUSG00000003273.14 ENSMUSG00000003273 ENSMUST00000210027 Car11 protein_coding Interval_157749 chr8 72737656 72737897 + 0 NA intron (ENSMUSG00000031622.16, intron 5 of 5) protein_coding-intron (ENSMUSG00000031622.16, intron 5 of 18) -3075 ENSMUSG00000031622.16 ENSMUSG00000031622 ENSMUST00000212677 Sin3b protein_coding Interval_38558 chr12 80126703 80127766 + 0 NA intron (ENSMUSG00000097729.2, intron 3 of 5) processed_transcript-intron (ENSMUSG00000097729.2, intron 2 of 2) 5362 ENSMUSG00000097729.2 ENSMUSG00000097729 ENSMUST00000180643 2310015A10Rik processed_transcript Interval_140329 chr6 116626531 116626732 + 0 NA promoter-TSS (ENSMUSG00000059878.12) protein_coding-promoter-TSS (ENSMUSG00000059878.12) 68 ENSMUSG00000059878.12 ENSMUSG00000059878 ENSMUST00000204557 Zfp422 protein_coding Interval_4327 chr1 72739115 72740101 + 0 NA Intergenic Intergenic 28294 ENSMUSG00000046330.10 ENSMUSG00000046330 ENSMUST00000211963 Rpl37a protein_coding Interval_7033 chr1 122950951 122951184 + 0 NA Intergenic Intergenic 85025 ENSMUSG00000104180.1 ENSMUSG00000104180 ENSMUST00000193865 Gm37970 TEC Interval_146513 chr7 46529882 46531117 + 0 NA intron (ENSMUSG00000030839.12, intron 9 of 11) protein_coding-intron (ENSMUSG00000030839.12, intron 9 of 10) -17719 ENSMUSG00000110316.1 ENSMUSG00000110316 ENSMUST00000211086 Gm45311 sense_intronic Interval_118014 chr4 128126300 128127259 + 0 NA intron (ENSMUSG00000028804.20, intron 3 of 70) protein_coding-intron (ENSMUSG00000028804.20, intron 3 of 12) 40188 ENSMUSG00000087459.8 ENSMUSG00000087459 ENSMUST00000179945 Csmd2os antisense Interval_88218 chr19 60764281 60765195 + 0 NA intron (ENSMUSG00000024991.8, intron 19 of 21) protein_coding-intron (ENSMUSG00000024991.8, intron 19 of 21) 8751 ENSMUSG00000072437.4 ENSMUSG00000072437 ENSMUST00000088237 Nanos1 protein_coding Interval_34966 chr12 15827238 15827574 + 0 NA intron (ENSMUSG00000097580.1, intron 1 of 2) bidirectional_promoter_lncRNA-intron (ENSMUSG00000097580.1, intron 1 of 2) 10403 ENSMUSG00000097580.1 ENSMUSG00000097580 ENSMUST00000180759 Gm5432 bidirectional_promoter_lncRNA Interval_24950 chr11 41859952 41860191 + 0 NA intron (ENSMUSG00000087306.7, intron 3 of 8) processed_transcript-intron (ENSMUSG00000087306.7, intron 3 of 8) 56552 ENSMUSG00000020436.17 ENSMUSG00000020436 ENSMUST00000109290 Gabrg2 protein_coding Interval_168881 chr9 88326995 88328061 + 0 NA promoter-TSS (ENSMUSG00000032420.8) protein_coding-promoter-TSS (ENSMUSG00000032420.8) -28159 ENSMUSG00000032420.8 ENSMUSG00000032420 ENSMUST00000217134 Nt5e protein_coding Interval_115612 chr4 101388152 101389499 + 0 NA intron (ENSMUSG00000087361.7, intron 3 of 3) lincRNA-intron (ENSMUSG00000087361.7, intron 3 of 3) -14256 ENSMUSG00000084758.1 ENSMUSG00000084758 ENSMUST00000124786 Gm12798 lincRNA Interval_116844 chr4 117645054 117645662 + 0 NA intron (ENSMUSG00000033423.16, intron 1 of 2) protein_coding-intron (ENSMUSG00000033423.16, intron 7 of 8) 36895 ENSMUSG00000009640.11 ENSMUSG00000009640 ENSMUST00000127750 Dmap1 protein_coding Interval_97158 chr2 131842447 131843140 + 0 NA TTS (ENSMUSG00000086822.2) lincRNA-TTS (ENSMUSG00000086822.2) 2802 ENSMUSG00000081422.1 ENSMUSG00000081422 ENSMUST00000119484 Gm14282 transcribed_processed_pseudogene Interval_40400 chr12 104642899 104643181 + 0 NA Intergenic Intergenic 79012 ENSMUSG00000041415.10 ENSMUSG00000041415 ENSMUST00000222002 Dicer1 protein_coding Interval_81649 chr18 62843335 62844457 + 0 NA Intergenic Intergenic 78205 ENSMUSG00000117671.1 ENSMUSG00000117671 ENSMUST00000237856 Gm50128 bidirectional_promoter_lncRNA Interval_172288 chrX 12347460 12348589 + 0 NA intron (ENSMUSG00000087591.7, intron 1 of 3) lincRNA-intron (ENSMUSG00000087591.7, intron 1 of 3) 6972 ENSMUSG00000087591.7 ENSMUSG00000087591 ENSMUST00000137281 Gm14635 lincRNA Interval_15238 chr10 43589199 43589620 + 0 NA Intergenic Intergenic -4030 ENSMUSG00000075184.3 ENSMUSG00000075184 ENSMUST00000215845 F930017D23Rik lincRNA Interval_174328 chrX 144387840 144388121 + 0 NA intron (ENSMUSG00000041710.4, intron 8 of 10) protein_coding-intron (ENSMUSG00000041710.4, intron 8 of 10) -66725 ENSMUSG00000080922.1 ENSMUSG00000080922 ENSMUST00000121333 Gm2214 processed_pseudogene Interval_75697 chr17 70729308 70729834 + 0 NA intron (ENSMUSG00000003279.17, intron 5 of 10) protein_coding-intron (ENSMUSG00000003279.17, intron 9 of 14) 26011 ENSMUSG00000097282.1 ENSMUSG00000097282 ENSMUST00000181546 5031415H12Rik antisense Interval_25000 chr11 42883949 42884213 + 0 NA Intergenic Intergenic -13414 ENSMUSG00000084627.1 ENSMUSG00000084627 ENSMUST00000122678 Gm25543 misc_RNA Interval_145642 chr7 36662109 36662308 + 0 NA Intergenic Intergenic -33230 ENSMUSG00000104330.1 ENSMUSG00000104330 ENSMUST00000192928 Gm38285 TEC Interval_154121 chr8 12883671 12884117 + 0 NA promoter-TSS (ENSMUSG00000079146.2) antisense-promoter-TSS (ENSMUSG00000079146.2) -178 ENSMUSG00000079146.2 ENSMUSG00000079146 ENSMUST00000149938 Gm15353 antisense Interval_96130 chr2 119940976 119941264 + 0 NA promoter-TSS (ENSMUSG00000033943.15) protein_coding-promoter-TSS (ENSMUSG00000033943.15) -31783 ENSMUSG00000033902.12 ENSMUSG00000033902 ENSMUST00000148161 Mapkbp1 protein_coding Interval_146908 chr7 55769220 55769639 + 0 NA intron (ENSMUSG00000051504.18, intron 2 of 4) protein_coding-intron (ENSMUSG00000051504.18, intron 3 of 5) 1193 ENSMUSG00000051504.18 ENSMUSG00000051504 ENSMUST00000154933 Siglech protein_coding Interval_124592 chr5 52132011 52132892 + 0 NA Intergenic Intergenic 3566 ENSMUSG00000098726.1 ENSMUSG00000098726 ENSMUST00000183815 Mir6417 miRNA Interval_70785 chr17 14497354 14497731 + 0 NA Intergenic Intergenic 47971 ENSMUSG00000116801.1 ENSMUSG00000116801 ENSMUST00000232609 Gm38551 lincRNA Interval_121647 chr5 4262628 4263451 + 0 NA Intergenic Intergenic 70672 ENSMUSG00000053178.5 ENSMUSG00000053178 ENSMUST00000177258 Mterf1b protein_coding Interval_50941 chr14 20928547 20930039 + 0 NA promoter-TSS (ENSMUSG00000021823.10) protein_coding-promoter-TSS (ENSMUSG00000021823.10) -105 ENSMUSG00000021823.10 ENSMUSG00000021823 ENSMUST00000224380 Vcl protein_coding Interval_24619 chr11 35326174 35327171 + 0 NA intron (ENSMUSG00000056427.10, intron 2 of 3) protein_coding-intron (ENSMUSG00000056427.10, intron 4 of 35) -3002 ENSMUSG00000082309.3 ENSMUSG00000082309 ENSMUST00000120348 Gm12123 processed_pseudogene Interval_99070 chr2 157006402 157007658 + 0 NA promoter-TSS (ENSMUSG00000027635.15) protein_coding-promoter-TSS (ENSMUSG00000027635.15) -456 ENSMUSG00000027635.15 ENSMUSG00000027635 ENSMUST00000154213 Dsn1 protein_coding Interval_159124 chr8 90851463 90852388 + 0 NA intron (ENSMUSG00000056608.14, intron 2 of 39) protein_coding-intron (ENSMUSG00000056608.14, intron 2 of 39) -2079 ENSMUSG00000110166.1 ENSMUSG00000110166 ENSMUST00000209775 Gm45641 antisense Interval_170714 chr9 110257476 110258512 + 0 NA exon (ENSMUSG00000032482.9, exon 4 of 4) protein_coding-exon (ENSMUSG00000032482.9, exon 4 of 4) -3850 ENSMUSG00000104988.1 ENSMUSG00000104988 ENSMUST00000200140 Gm43622 TEC Interval_64081 chr16 7413035 7413222 + 0 NA Intergenic Intergenic 219381 ENSMUSG00000008658.16 ENSMUSG00000008658 ENSMUST00000231031 Rbfox1 protein_coding Interval_154351 chr8 14917159 14917384 + 0 NA intron (ENSMUSG00000071176.10, intron 1 of 15) protein_coding-intron (ENSMUSG00000071176.10, intron 1 of 28) -28030 ENSMUSG00000071176.10 ENSMUSG00000071176 ENSMUST00000162636 Arhgef10 protein_coding Interval_116213 chr4 108764053 108764631 + 0 NA intron (ENSMUSG00000034557.14, intron 1 of 17) protein_coding-intron (ENSMUSG00000034557.14, intron 1 of 18) 16161 ENSMUSG00000034557.14 ENSMUSG00000034557 ENSMUST00000042185 Zfyve9 protein_coding Interval_90437 chr2 30445188 30445934 + 0 NA promoter-TSS (ENSMUSG00000039515.11) protein_coding-promoter-TSS (ENSMUSG00000039515.11) 28658 ENSMUSG00000089762.3 ENSMUSG00000089762 ENSMUST00000065134 Ier5l protein_coding Interval_140005 chr6 113361430 113362251 + 0 NA Intergenic Intergenic -6675 ENSMUSG00000108162.1 ENSMUSG00000108162 ENSMUST00000204099 Gm20589 processed_pseudogene Interval_93014 chr2 69599609 69600322 + 0 NA Intergenic Intergenic -47265 ENSMUSG00000063145.10 ENSMUSG00000063145 ENSMUST00000127806 Bbs5 protein_coding Interval_37442 chr12 68880213 68880535 + 0 NA Intergenic Intergenic -68077 ENSMUSG00000112933.1 ENSMUSG00000112933 ENSMUST00000223294 Gm47491 processed_pseudogene Interval_92120 chr2 53440070 53440627 + 0 NA Intergenic Intergenic -41861 ENSMUSG00000082472.1 ENSMUSG00000082472 ENSMUST00000118477 Gm13501 processed_pseudogene Interval_90684 chr2 31880619 31881554 + 0 NA Intergenic Intergenic -6205 ENSMUSG00000026840.14 ENSMUSG00000026840 ENSMUST00000135995 Lamc3 protein_coding Interval_131348 chr5 136636318 136637152 + 0 NA Intergenic Intergenic -61044 ENSMUSG00000005474.9 ENSMUSG00000005474 ENSMUST00000197849 Myl10 protein_coding Interval_145124 chr7 30183908 30184621 + 0 NA promoter-TSS (ENSMUSG00000074218.3) protein_coding-promoter-TSS (ENSMUSG00000074218.3) 70 ENSMUSG00000074218.3 ENSMUSG00000074218 ENSMUST00000208441 Cox7a1 protein_coding Interval_99063 chr2 156953212 156953405 + 0 NA promoter-TSS (ENSMUSG00000027634.14) protein_coding-promoter-TSS (ENSMUSG00000027634.14) 10985 ENSMUSG00000098750.1 ENSMUSG00000098750 ENSMUST00000185037 Gm27653 scaRNA Interval_18528 chr10 86984379 86985287 + 0 NA intron (ENSMUSG00000035459.18, intron 3 of 68) protein_coding-intron (ENSMUSG00000035459.18, intron 3 of 68) 12617 ENSMUSG00000089656.1 ENSMUSG00000089656 ENSMUST00000162837 Gm16271 antisense Interval_142989 chr6 148085518 148085904 + 0 NA intron (ENSMUSG00000030303.15, intron 1 of 12) protein_coding-intron (ENSMUSG00000030303.15, intron 1 of 11) -17838 ENSMUSG00000089948.1 ENSMUSG00000089948 ENSMUST00000162391 Far2os1 antisense Interval_166708 chr9 62186165 62186465 + 0 NA Intergenic Intergenic -55355 ENSMUSG00000110826.1 ENSMUSG00000110826 ENSMUST00000217557 Gm47262 lincRNA Interval_123221 chr5 30734853 30735281 + 0 NA intron (ENSMUSG00000029168.14, intron 1 of 12) protein_coding-intron (ENSMUSG00000029168.14, intron 1 of 12) -23965 ENSMUSG00000106173.1 ENSMUSG00000106173 ENSMUST00000197835 Gm42764 sense_intronic Interval_150947 chr7 116607923 116608946 + 0 NA Intergenic Intergenic 16808 ENSMUSG00000084492.1 ENSMUSG00000084492 ENSMUST00000122543 n-R5s157 rRNA Interval_66091 chr16 31550703 31550914 + 0 NA Intergenic Intergenic 42412 ENSMUSG00000116793.1 ENSMUSG00000116793 ENSMUST00000232216 Gm34256 lincRNA Interval_69427 chr16 93305775 93306756 + 0 NA Intergenic Intergenic 59125 ENSMUSG00000100277.8 ENSMUSG00000100277 ENSMUST00000231338 1810053B23Rik processed_transcript Interval_86072 chr19 36242459 36243563 + 0 NA intron (ENSMUSG00000117990.1, intron 2 of 3) processed_transcript-intron (ENSMUSG00000117990.1, intron 2 of 3) -8716 ENSMUSG00000118032.1 ENSMUSG00000118032 ENSMUST00000236788 Gm50147 lincRNA Interval_158761 chr8 85977650 85978098 + 0 NA intron (ENSMUSG00000036879.15, intron 15 of 31) protein_coding-intron (ENSMUSG00000036879.15, intron 15 of 31) -16371 ENSMUSG00000098439.1 ENSMUSG00000098439 ENSMUST00000183645 Hm629797 sense_intronic Interval_9996 chr1 164790180 164790617 + 0 NA Intergenic Intergenic -6246 ENSMUSG00000026574.5 ENSMUSG00000026574 ENSMUST00000027861 Dpt protein_coding Interval_143679 chr7 14353395 14353720 + 0 NA Intergenic Intergenic -11227 ENSMUSG00000098782.2 ENSMUSG00000098782 ENSMUST00000183899 Mrps36-ps3 processed_pseudogene Interval_92203 chr2 56119272 56119720 + 0 NA Intergenic Intergenic 79643 ENSMUSG00000082142.1 ENSMUSG00000082142 ENSMUST00000120018 Gm13518 processed_pseudogene Interval_134407 chr6 28402544 28403146 + 0 NA Intergenic Intergenic -20864 ENSMUSG00000020440.13 ENSMUSG00000020440 ENSMUST00000202028 Arf5 protein_coding Interval_104756 chr3 70718378 70719080 + 0 NA Intergenic Intergenic 29637 ENSMUSG00000074877.3 ENSMUSG00000074877 ENSMUST00000099459 Gm10780 pseudogene Interval_83056 chr18 80885953 80887408 + 0 NA intron (ENSMUSG00000024566.10, intron 2 of 8) protein_coding-intron (ENSMUSG00000024566.10, intron 5 of 29) 32371 ENSMUSG00000114756.1 ENSMUSG00000114756 ENSMUST00000225547 Gm47273 processed_pseudogene Interval_95246 chr2 105153102 105153709 + 0 NA intron (ENSMUSG00000016458.15, intron 5 of 9) protein_coding-intron (ENSMUSG00000016458.15, intron 4 of 8) -9403 ENSMUSG00000016458.15 ENSMUSG00000016458 ENSMUST00000153944 Wt1 protein_coding Interval_154774 chr8 23258597 23259252 + 0 NA TTS (ENSMUSG00000110256.1) TEC-TTS (ENSMUSG00000110256.1) -1858 ENSMUSG00000015341.17 ENSMUSG00000015341 ENSMUST00000211602 Golga7 protein_coding Interval_103004 chr3 34198276 34198486 + 0 NA intron (ENSMUSG00000105265.4, intron 2 of 2) processed_transcript-intron (ENSMUSG00000105265.4, intron 2 of 4) 1517 ENSMUSG00000105265.4 ENSMUSG00000105265 ENSMUST00000197697 Sox2ot processed_transcript Interval_52946 chr14 52180522 52181383 + 0 NA intron (ENSMUSG00000035726.8, intron 6 of 25) protein_coding-intron (ENSMUSG00000035726.8, intron 6 of 25) -17822 ENSMUSG00000035726.8 ENSMUSG00000035726 ENSMUST00000227577 Supt16 protein_coding Interval_92373 chr2 59348001 59348847 + 0 NA TTS (ENSMUSG00000026991.20) protein_coding-TTS (ENSMUSG00000026991.20) 39047 ENSMUSG00000087455.7 ENSMUSG00000087455 ENSMUST00000155111 5330411J11Rik processed_transcript Interval_19262 chr10 95880011 95881145 + 0 NA Intergenic Intergenic -9779 ENSMUSG00000111992.1 ENSMUSG00000111992 ENSMUST00000218412 Gm47724 processed_pseudogene Interval_105692 chr3 88593960 88594713 + 0 NA Intergenic Intergenic 14728 ENSMUSG00000041355.13 ENSMUSG00000041355 ENSMUST00000035785 Ssr2 protein_coding Interval_133959 chr6 16626840 16628441 + 0 NA Intergenic Intergenic 77253 ENSMUSG00000108025.1 ENSMUSG00000108025 ENSMUST00000204284 Gm36503 lincRNA Interval_43139 chr13 24603728 24605954 + 0 NA promoter-TSS (ENSMUSG00000085603.3) transcribed_processed_pseudogene-promoter-TSS (ENSMUSG00000085603.3) -74 ENSMUSG00000085603.3 ENSMUSG00000085603 ENSMUST00000127863 Gm11346 transcribed_processed_pseudogene Interval_162581 chr9 5049600 5050057 + 0 NA Intergenic Intergenic -61571 ENSMUSG00000084690.1 ENSMUSG00000084690 ENSMUST00000122741 Gm24896 snoRNA Interval_33685 chr11 117915571 117916094 + 0 NA Intergenic Intergenic -6073 ENSMUSG00000082562.1 ENSMUSG00000082562 ENSMUST00000121028 Gm11726 processed_pseudogene Interval_99896 chr2 165682668 165683126 + 0 NA intron (ENSMUSG00000017897.18, intron 4 of 7) protein_coding-intron (ENSMUSG00000017897.18, intron 3 of 15) -16040 ENSMUSG00000081758.1 ENSMUSG00000081758 ENSMUST00000118200 Gm11460 processed_pseudogene Interval_154338 chr8 14773271 14773484 + 0 NA exon (ENSMUSG00000047495.15, exon 7 of 15) protein_coding-exon (ENSMUSG00000047495.15, exon 7 of 15) -25950 ENSMUSG00000084945.1 ENSMUSG00000084945 ENSMUST00000155211 C030037F17Rik antisense Interval_135280 chr6 38006119 38006484 + 0 NA intron (ENSMUSG00000029830.15, intron 9 of 10) protein_coding-intron (ENSMUSG00000029830.15, intron 14 of 15) 12310 ENSMUSG00000029830.15 ENSMUSG00000029830 ENSMUST00000040486 Svopl protein_coding Interval_304 chr1 3343860 3344953 + 0 NA intron (ENSMUSG00000051951.5, intron 2 of 2) protein_coding-intron (ENSMUSG00000051951.5, intron 2 of 2) 24143 ENSMUSG00000103377.1 ENSMUSG00000103377 ENSMUST00000195335 Gm37180 TEC Interval_96102 chr2 119771178 119772192 + 0 NA intron (ENSMUSG00000034032.15, intron 15 of 23) protein_coding-intron (ENSMUSG00000034032.15, intron 15 of 24) -13160 ENSMUSG00000027297.14 ENSMUSG00000027297 ENSMUST00000134295 Ltk protein_coding Interval_39323 chr12 86705526 86706280 + 0 NA promoter-TSS (ENSMUSG00000021257.14) protein_coding-promoter-TSS (ENSMUSG00000021257.14) -9083 ENSMUSG00000091942.1 ENSMUSG00000091942 ENSMUST00000165702 Gm17138 processed_pseudogene Interval_21212 chr10 127248157 127248869 + 0 NA intron (ENSMUSG00000074657.5, intron 1 of 4) protein_coding-intron (ENSMUSG00000074657.5, intron 1 of 28) 14582 ENSMUSG00000074657.5 ENSMUSG00000074657 ENSMUST00000218298 Kif5a protein_coding Interval_88122 chr19 59387072 59387657 + 0 NA Intergenic Intergenic -2420 ENSMUSG00000110210.1 ENSMUSG00000110210 ENSMUST00000211358 Gm33756 lincRNA Interval_105377 chr3 85710357 85711111 + 0 NA intron (ENSMUSG00000051000.17, intron 4 of 11) protein_coding-intron (ENSMUSG00000051000.17, intron 4 of 10) -36746 ENSMUSG00000051000.17 ENSMUSG00000051000 ENSMUST00000094148 Fam160a1 protein_coding Interval_72066 chr17 27815209 27815426 + 0 NA intron (ENSMUSG00000056692.13, intron 1 of 4) protein_coding-intron (ENSMUSG00000056692.13, intron 1 of 3) 5249 ENSMUSG00000056692.13 ENSMUSG00000056692 ENSMUST00000233035 Ilrun protein_coding Interval_144942 chr7 29028733 29029192 + 0 NA promoter-TSS (ENSMUSG00000109017.1) antisense-promoter-TSS (ENSMUSG00000109017.1) -61 ENSMUSG00000109017.1 ENSMUSG00000109017 ENSMUST00000207099 Gm38979 antisense Interval_70781 chr17 14457283 14457476 + 0 NA intron (ENSMUSG00000116801.1, intron 1 of 4) lincRNA-intron (ENSMUSG00000116801.1, intron 1 of 4) 7808 ENSMUSG00000116801.1 ENSMUSG00000116801 ENSMUST00000232609 Gm38551 lincRNA Interval_172696 chrX 43246504 43246746 + 0 NA intron (ENSMUSG00000016150.15, intron 2 of 9) protein_coding-intron (ENSMUSG00000016150.15, intron 1 of 32) -7421 ENSMUSG00000065622.1 ENSMUSG00000065622 ENSMUST00000083688 Gm24763 snRNA Interval_123813 chr5 35700946 35701529 + 0 NA intron (ENSMUSG00000036553.16, intron 14 of 17) protein_coding-intron (ENSMUSG00000036553.16, intron 14 of 17) -21318 ENSMUSG00000087703.1 ENSMUSG00000087703 ENSMUST00000135451 Gm15650 antisense Interval_34196 chr11 121209526 121210383 + 0 NA intron (ENSMUSG00000039307.16, intron 1 of 11) protein_coding-intron (ENSMUSG00000039307.16, intron 2 of 12) 2251 ENSMUSG00000039307.16 ENSMUSG00000039307 ENSMUST00000124761 Hexdc protein_coding Interval_140466 chr6 118444035 118444449 + 0 NA intron (ENSMUSG00000030145.14, intron 2 of 4) protein_coding-intron (ENSMUSG00000030145.14, intron 3 of 5) 11260 ENSMUSG00000030145.14 ENSMUSG00000030145 ENSMUST00000159254 Zfp248 protein_coding Interval_5244 chr1 86719175 86719795 + 0 NA intron (ENSMUSG00000053333.15, intron 1 of 20) protein_coding-intron (ENSMUSG00000053333.15, intron 1 of 20) 15657 ENSMUSG00000053333.15 ENSMUSG00000053333 ENSMUST00000186682 Dis3l2 protein_coding Interval_167992 chr9 75303295 75304687 + 0 NA exon (ENSMUSG00000033590.8, exon 41 of 41) protein_coding-exon (ENSMUSG00000033590.8, exon 41 of 41) 10880 ENSMUSG00000111348.1 ENSMUSG00000111348 ENSMUST00000216737 Gm19531 antisense Interval_4379 chr1 73525435 73526091 + 0 NA promoter-TSS (ENSMUSG00000100444.1) lincRNA-promoter-TSS (ENSMUSG00000100444.1) -303 ENSMUSG00000100444.1 ENSMUSG00000100444 ENSMUST00000186453 C530043A13Rik lincRNA Interval_159151 chr8 91117540 91118422 + 0 NA intron (ENSMUSG00000031666.15, intron 20 of 20) protein_coding-intron (ENSMUSG00000031666.15, intron 21 of 21) -1310 ENSMUSG00000109727.1 ENSMUSG00000109727 ENSMUST00000210728 Gm45464 sense_intronic Interval_17733 chr10 79803603 79804848 + 0 NA intron (ENSMUSG00000035863.14, intron 1 of 6) protein_coding-intron (ENSMUSG00000035863.14, intron 1 of 8) -9569 ENSMUSG00000112828.1 ENSMUSG00000112828 ENSMUST00000219552 Gm48495 antisense Interval_78345 chr18 12083193 12083770 + 0 NA TTS (ENSMUSG00000049411.15) protein_coding-TTS (ENSMUSG00000049411.15) 37999 ENSMUSG00000049411.15 ENSMUSG00000049411 ENSMUST00000234833 Tmem241 protein_coding Interval_18258 chr10 84386339 84387417 + 0 NA intron (ENSMUSG00000020032.14, intron 1 of 3) protein_coding-intron (ENSMUSG00000020032.14, intron 4 of 6) 5510 ENSMUSG00000020032.14 ENSMUSG00000020032 ENSMUST00000129355 Nuak1 protein_coding Interval_76982 chr17 85372221 85372639 + 0 NA intron (ENSMUSG00000071037.6, intron 3 of 10) protein_coding-intron (ENSMUSG00000071037.6, intron 3 of 10) -126203 ENSMUSG00000097803.1 ENSMUSG00000097803 ENSMUST00000181130 Rpl31-ps16 processed_pseudogene Interval_129485 chr5 120505402 120505827 + 0 NA Intergenic Intergenic -2002 ENSMUSG00000029598.12 ENSMUSG00000029598 ENSMUST00000151361 Plbd2 protein_coding Interval_16910 chr10 69792809 69794275 + 0 NA intron (ENSMUSG00000069601.14, intron 1 of 7) protein_coding-intron (ENSMUSG00000069601.14, intron 1 of 16) -227181 ENSMUSG00000112729.1 ENSMUSG00000112729 ENSMUST00000220152 Gm46231 processed_pseudogene Interval_145806 chr7 39464377 39465186 + 0 NA intron (ENSMUSG00000030424.15, intron 2 of 5) transcribed_unprocessed_pseudogene-intron (ENSMUSG00000030424.15, intron 1 of 2) 15263 ENSMUSG00000030424.15 ENSMUSG00000030424 ENSMUST00000061201 Zfp939 transcribed_unprocessed_pseudogene Interval_56594 chr14 120677458 120677746 + 0 NA Intergenic Intergenic -35476 ENSMUSG00000115630.1 ENSMUSG00000115630 ENSMUST00000226406 Rpl19-ps5 processed_pseudogene Interval_155345 chr8 32008418 32010240 + 0 NA promoter-TSS (ENSMUSG00000062991.9) protein_coding-promoter-TSS (ENSMUSG00000062991.9) -220 ENSMUSG00000062991.9 ENSMUSG00000062991 ENSMUST00000208206 Nrg1 protein_coding Interval_1210 chr1 17145281 17145876 + 0 NA exon (ENSMUSG00000025777.8, exon 1 of 6) protein_coding-exon (ENSMUSG00000025777.8, exon 1 of 6) 110 ENSMUSG00000025777.8 ENSMUSG00000025777 ENSMUST00000189465 Gdap1 protein_coding Interval_65852 chr16 29795270 29795901 + 0 NA Intergenic Intergenic -15473 ENSMUSG00000097307.1 ENSMUSG00000097307 ENSMUST00000181815 Gm26834 lincRNA Interval_33422 chr11 116469644 116470122 + 0 NA TTS (ENSMUSG00000015869.16) protein_coding-TTS (ENSMUSG00000015869.16) 3564 ENSMUSG00000086826.1 ENSMUSG00000086826 ENSMUST00000125269 Gm11739 antisense Interval_141068 chr6 124788289 124790378 + 0 NA Intergenic Intergenic -9629 ENSMUSG00000030125.11 ENSMUSG00000030125 ENSMUST00000147669 Lrrc23 protein_coding Interval_32982 chr11 113501110 113501576 + 0 NA intron (ENSMUSG00000041654.15, intron 4 of 4) protein_coding-intron (ENSMUSG00000041654.15, intron 5 of 10) 33366 ENSMUSG00000078251.2 ENSMUSG00000078251 ENSMUST00000105048 Gm16487 pseudogene Interval_25188 chr11 44982132 44982364 + 0 NA intron (ENSMUSG00000057098.14, intron 11 of 15) protein_coding-intron (ENSMUSG00000057098.14, intron 11 of 15) 134680 ENSMUSG00000084773.1 ENSMUSG00000084773 ENSMUST00000143869 Gm12159 lincRNA Interval_49855 chr13 117220058 117221369 + 0 NA promoter-TSS (ENSMUSG00000021728.8) protein_coding-promoter-TSS (ENSMUSG00000021728.8) 359 ENSMUSG00000091423.2 ENSMUSG00000091423 ENSMUST00000238456 Gm17509 antisense Interval_105040 chr3 79995402 79996255 + 0 NA Intergenic Intergenic -59064 ENSMUSG00000103181.1 ENSMUSG00000103181 ENSMUST00000194077 A330069K06Rik lincRNA Interval_63921 chr16 4575717 4577162 + 0 NA Intergenic Intergenic -17656 ENSMUSG00000005718.8 ENSMUSG00000005718 ENSMUST00000229956 Tfap4 protein_coding Interval_140522 chr6 119220414 119220676 + 0 NA TTS (ENSMUSG00000041477.14) protein_coding-TTS (ENSMUSG00000041477.14) -15981 ENSMUSG00000041460.16 ENSMUSG00000041460 ENSMUST00000185965 Cacna2d4 protein_coding Interval_137631 chr6 76728198 76728905 + 0 NA Intergenic Intergenic -230767 ENSMUSG00000072476.6 ENSMUSG00000072476 ENSMUST00000097218 Gm9008 protein_coding Interval_121615 chr5 3927670 3928974 + 0 NA promoter-TSS (ENSMUSG00000040407.18) protein_coding-promoter-TSS (ENSMUSG00000040407.18) -34426 ENSMUSG00000040429.6 ENSMUSG00000040429 ENSMUST00000196417 Mterf1a protein_coding Interval_51736 chr14 31790789 31791331 + 0 NA intron (ENSMUSG00000014496.8, intron 1 of 27) protein_coding-intron (ENSMUSG00000014496.8, intron 1 of 27) -11809 ENSMUSG00000115812.1 ENSMUSG00000115812 ENSMUST00000228722 Gm49309 transcribed_processed_pseudogene Interval_157379 chr8 69977379 69978156 + 0 NA intron (ENSMUSG00000036180.15, intron 1 of 12) protein_coding-intron (ENSMUSG00000036180.15, intron 1 of 12) 18617 ENSMUSG00000036180.15 ENSMUSG00000036180 ENSMUST00000211960 Gatad2a protein_coding Interval_131857 chr5 140408674 140409020 + 0 NA Intergenic Intergenic -18492 ENSMUSG00000098319.1 ENSMUSG00000098319 ENSMUST00000184833 Mir7038 miRNA Interval_166925 chr9 63965738 63966036 + 0 NA intron (ENSMUSG00000036867.7, intron 3 of 3) protein_coding-intron (ENSMUSG00000036867.7, intron 3 of 3) -38138 ENSMUSG00000111058.1 ENSMUSG00000111058 ENSMUST00000214827 Gm36033 lincRNA Interval_115625 chr4 101457480 101458800 + 0 NA intron (ENSMUSG00000028527.18, intron 1 of 3) protein_coding-intron (ENSMUSG00000028527.18, intron 3 of 5) 10917 ENSMUSG00000028527.18 ENSMUSG00000028527 ENSMUST00000155749 Ak4 protein_coding Interval_158997 chr8 88574239 88574918 + 0 NA intron (ENSMUSG00000031661.12, intron 2 of 7) protein_coding-intron (ENSMUSG00000031661.12, intron 4 of 9) -8227 ENSMUSG00000031661.12 ENSMUSG00000031661 ENSMUST00000211113 Nkd1 protein_coding Interval_117631 chr4 125144598 125146308 + 0 NA Intergenic Intergenic -22933 ENSMUSG00000042677.7 ENSMUSG00000042677 ENSMUST00000131685 Zc3h12a protein_coding Interval_22613 chr11 12279090 12279908 + 0 NA intron (ENSMUSG00000020173.17, intron 4 of 4) protein_coding-intron (ENSMUSG00000020173.17, intron 9 of 14) -42776 ENSMUSG00000086584.8 ENSMUSG00000086584 ENSMUST00000174550 Gm12002 antisense Interval_58294 chr15 31902894 31903174 + 0 NA Intergenic Intergenic -146917 ENSMUSG00000115561.1 ENSMUSG00000115561 ENSMUST00000227417 Gm49285 TEC Interval_131024 chr5 134620398 134621560 + 0 NA exon (ENSMUSG00000040731.13, exon 6 of 6) protein_coding-exon (ENSMUSG00000040731.13, exon 6 of 6) -17059 ENSMUSG00000040751.12 ENSMUSG00000040751 ENSMUST00000201832 Lat2 protein_coding Interval_76605 chr17 82348428 82349704 + 0 NA Intergenic Intergenic -6327 ENSMUSG00000117643.1 ENSMUSG00000117643 ENSMUST00000234825 Gm9390 processed_pseudogene Interval_1650 chr1 30799478 30799822 + 0 NA Intergenic Intergenic -4775 ENSMUSG00000101180.1 ENSMUSG00000101180 ENSMUST00000186120 Gm2914 processed_pseudogene Interval_75920 chr17 73068328 73069299 + 0 NA Intergenic Intergenic -39735 ENSMUSG00000117096.1 ENSMUSG00000117096 ENSMUST00000233236 Gm30420 lincRNA Interval_61195 chr15 79910765 79911030 + 0 NA intron (ENSMUSG00000009585.18, intron 7 of 8) protein_coding-intron (ENSMUSG00000009585.18, intron 7 of 8) 10555 ENSMUSG00000009585.18 ENSMUSG00000009585 ENSMUST00000175827 Apobec3 protein_coding Interval_150625 chr7 112900998 112901766 + 0 NA exon (ENSMUSG00000055320.18, exon 14 of 14) protein_coding-exon (ENSMUSG00000055320.18, exon 14 of 14) -52580 ENSMUSG00000098132.1 ENSMUSG00000098132 ENSMUST00000182858 Rassf10 protein_coding Interval_75701 chr17 70750680 70751616 + 0 NA intron (ENSMUSG00000097282.1, intron 2 of 2) protein_coding-intron (ENSMUSG00000003279.17, intron 9 of 14) 4434 ENSMUSG00000097282.1 ENSMUSG00000097282 ENSMUST00000181546 5031415H12Rik antisense Interval_10746 chr1 174053348 174055202 + 0 NA exon (ENSMUSG00000047048.4, exon 2 of 2) protein_coding-exon (ENSMUSG00000047048.4, exon 2 of 2) 2277 ENSMUSG00000102603.2 ENSMUSG00000102603 ENSMUST00000192435 Olfr431-ps1 unprocessed_pseudogene Interval_51287 chr14 25747095 25748093 + 0 NA intron (ENSMUSG00000055538.7, intron 2 of 3) protein_coding-intron (ENSMUSG00000055538.7, intron 2 of 3) -27802 ENSMUSG00000055538.7 ENSMUSG00000055538 ENSMUST00000184642 Zcchc24 protein_coding Interval_40259 chr12 102819472 102819912 + 0 NA intron (ENSMUSG00000041702.7, intron 4 of 11) protein_coding-intron (ENSMUSG00000041702.7, intron 3 of 10) -18416 ENSMUSG00000113907.1 ENSMUSG00000113907 ENSMUST00000220987 Gm47167 antisense Interval_46006 chr13 59980637 59980966 + 0 NA Intergenic Intergenic 61363 ENSMUSG00000114308.1 ENSMUSG00000114308 ENSMUST00000225115 Gm48390 processed_pseudogene Interval_89281 chr2 18782698 18782920 + 0 NA Intergenic Intergenic 19009 ENSMUSG00000097638.1 ENSMUSG00000097638 ENSMUST00000181515 Carlr protein_coding Interval_37916 chr12 73034731 73035739 + 0 NA Intergenic Intergenic 7580 ENSMUSG00000051367.8 ENSMUSG00000051367 ENSMUST00000175677 Six1 protein_coding Interval_60570 chr15 75175104 75175823 + 0 NA Intergenic Intergenic 20223 ENSMUSG00000022582.4 ENSMUSG00000022582 ENSMUST00000023246 Ly6g protein_coding Interval_147973 chr7 75995877 75997168 + 0 NA Intergenic Intergenic -4302 ENSMUSG00000108495.1 ENSMUSG00000108495 ENSMUST00000206543 Gm45139 TEC Interval_46400 chr13 64573865 64574548 + 0 NA Intergenic Intergenic -37654 ENSMUSG00000113850.1 ENSMUSG00000113850 ENSMUST00000222525 Gm47191 transcribed_processed_pseudogene Interval_165957 chr9 54950288 54951361 + 0 NA promoter-TSS (ENSMUSG00000032301.13) protein_coding-promoter-TSS (ENSMUSG00000032301.13) 9 ENSMUSG00000032301.13 ENSMUSG00000032301 ENSMUST00000171900 Psma4 protein_coding Interval_156869 chr8 61328026 61328955 + 0 NA intron (ENSMUSG00000031642.9, intron 2 of 10) protein_coding-intron (ENSMUSG00000031642.9, intron 2 of 11) -33099 ENSMUSG00000031642.9 ENSMUSG00000031642 ENSMUST00000210210 Sh3rf1 protein_coding Interval_141311 chr6 127109061 127109992 + 0 NA promoter-TSS (ENSMUSG00000038028.9) protein_coding-promoter-TSS (ENSMUSG00000038028.9) 31 ENSMUSG00000038028.9 ENSMUSG00000038028 ENSMUST00000200988 Tigar protein_coding Interval_145653 chr7 36770230 36771804 + 0 NA exon (ENSMUSG00000021217.7, exon 2 of 2) protein_coding-exon (ENSMUSG00000021217.7, exon 2 of 2) -19544 ENSMUSG00000089273.1 ENSMUSG00000089273 ENSMUST00000158648 Gm24550 misc_RNA Interval_39281 chr12 86442108 86442549 + 0 NA intron (ENSMUSG00000021255.17, intron 1 of 6) protein_coding-intron (ENSMUSG00000021255.17, intron 1 of 6) -27789 ENSMUSG00000021255.17 ENSMUSG00000021255 ENSMUST00000136464 Esrrb protein_coding Interval_66929 chr16 38583570 38583825 + 0 NA intron (ENSMUSG00000002845.14, intron 5 of 8) protein_coding-intron (ENSMUSG00000002845.14, intron 5 of 8) -10397 ENSMUSG00000091238.1 ENSMUSG00000091238 ENSMUST00000168897 Gm17103 antisense Interval_166387 chr9 58834772 58835037 + 0 NA intron (ENSMUSG00000032338.9, intron 1 of 7) protein_coding-intron (ENSMUSG00000032338.9, intron 1 of 7) 11492 ENSMUSG00000032338.9 ENSMUSG00000032338 ENSMUST00000034889 Hcn4 protein_coding Interval_44253 chr13 43016710 43017148 + 0 NA intron (ENSMUSG00000054728.17, intron 2 of 4) protein_coding-intron (ENSMUSG00000054728.17, intron 2 of 11) 18418 ENSMUSG00000090135.1 ENSMUSG00000090135 ENSMUST00000159361 Gm15809 sense_intronic Interval_160257 chr8 107504998 107505639 + 0 NA promoter-TSS (ENSMUSG00000031930.11) protein_coding-promoter-TSS (ENSMUSG00000031930.11) -45926 ENSMUSG00000065439.1 ENSMUSG00000065439 ENSMUST00000083505 Mir140 miRNA Interval_154940 chr8 25192496 25192920 + 0 NA intron (ENSMUSG00000065954.11, intron 1 of 1) protein_coding-intron (ENSMUSG00000065954.11, intron 1 of 1) 8741 ENSMUSG00000065954.11 ENSMUSG00000065954 ENSMUST00000211218 Tacc1 protein_coding Interval_31213 chr11 98932119 98933033 + 0 NA intron (ENSMUSG00000037992.16, intron 1 of 8) protein_coding-intron (ENSMUSG00000037992.16, intron 1 of 8) -7135 ENSMUSG00000037992.16 ENSMUSG00000037992 ENSMUST00000107473 Rara protein_coding Interval_51286 chr14 25743591 25743945 + 0 NA intron (ENSMUSG00000055538.7, intron 2 of 3) protein_coding-intron (ENSMUSG00000055538.7, intron 2 of 3) -23976 ENSMUSG00000055538.7 ENSMUSG00000055538 ENSMUST00000184642 Zcchc24 protein_coding Interval_1632 chr1 30542075 30542576 + 0 NA Intergenic Intergenic 177637 ENSMUSG00000053185.2 ENSMUSG00000053185 ENSMUST00000065469 Gm9898 lincRNA Interval_82604 chr18 75394797 75395391 + 0 NA TTS (ENSMUSG00000025880.11) protein_coding-TTS (ENSMUSG00000025880.11) 26104 ENSMUSG00000025880.11 ENSMUSG00000025880 ENSMUST00000172718 Smad7 protein_coding Interval_134016 chr6 17720576 17720821 + 0 NA TTS (ENSMUSG00000106822.1) TEC-TTS (ENSMUSG00000106822.1) 3120 ENSMUSG00000106822.1 ENSMUSG00000106822 ENSMUST00000202933 Gm43533 TEC Interval_91854 chr2 50317451 50317845 + 0 NA intron (ENSMUSG00000085862.2, intron 1 of 2) lincRNA-intron (ENSMUSG00000085862.2, intron 1 of 2) 20743 ENSMUSG00000085862.2 ENSMUSG00000085862 ENSMUST00000228816 Gm13483 lincRNA Interval_110428 chr3 158019890 158020220 + 0 NA intron (ENSMUSG00000055436.18, intron 4 of 7) protein_coding-intron (ENSMUSG00000055436.18, intron 6 of 12) 11699 ENSMUSG00000055436.18 ENSMUSG00000055436 ENSMUST00000197292 Srsf11 protein_coding Interval_124323 chr5 43923788 43924452 + 0 NA Intergenic Intergenic 7367 ENSMUSG00000093859.2 ENSMUSG00000093859 ENSMUST00000177915 Gm7882 processed_pseudogene Interval_140211 chr6 115568350 115568794 + 0 NA intron (ENSMUSG00000042389.13, intron 7 of 11) protein_coding-intron (ENSMUSG00000042389.13, intron 7 of 11) -5876 ENSMUSG00000042389.13 ENSMUSG00000042389 ENSMUST00000143520 Tsen2 protein_coding Interval_112283 chr4 39951289 39951473 + 0 NA Intergenic Intergenic 30177 ENSMUSG00000088526.1 ENSMUSG00000088526 ENSMUST00000157901 Gm26087 snRNA Interval_54035 chr14 64649619 64650517 + 0 NA intron (ENSMUSG00000060012.9, intron 1 of 7) protein_coding-intron (ENSMUSG00000060012.9, intron 1 of 7) -2492 ENSMUSG00000060012.9 ENSMUSG00000060012 ENSMUST00000224677 Kif13b protein_coding Interval_6042 chr1 94729350 94729892 + 0 NA Intergenic Intergenic -67462 ENSMUSG00000100518.1 ENSMUSG00000100518 ENSMUST00000185490 4930440C22Rik lincRNA Interval_136472 chr6 54809667 54810314 + 0 NA Intergenic Intergenic -7280 ENSMUSG00000058446.14 ENSMUSG00000058446 ENSMUST00000127331 Znrf2 protein_coding Interval_56392 chr14 118393779 118394116 + 0 NA intron (ENSMUSG00000099911.1, intron 4 of 5) lincRNA-intron (ENSMUSG00000099911.1, intron 4 of 5) -17753 ENSMUSG00000115515.1 ENSMUSG00000115515 ENSMUST00000226188 Gm5672 processed_pseudogene Interval_42162 chr13 9381747 9382054 + 0 NA intron (ENSMUSG00000048264.16, intron 1 of 36) protein_coding-intron (ENSMUSG00000048264.16, intron 1 of 38) 29872 ENSMUSG00000113869.1 ENSMUSG00000113869 ENSMUST00000222099 Gm48869 processed_pseudogene Interval_60417 chr15 73630110 73631272 + 0 NA intron (ENSMUSG00000079020.9, intron 1 of 1) protein_coding-intron (ENSMUSG00000079020.9, intron 1 of 1) -15161 ENSMUSG00000099958.1 ENSMUSG00000099958 ENSMUST00000188278 1700010B13Rik processed_transcript Interval_56029 chr14 104818440 104818677 + 0 NA intron (ENSMUSG00000115432.1, intron 3 of 4) lincRNA-intron (ENSMUSG00000115432.1, intron 2 of 4) -152869 ENSMUSG00000077425.1 ENSMUSG00000077425 ENSMUST00000104237 Gm24280 snoRNA Interval_134996 chr6 34413539 34413916 + 0 NA intron (ENSMUSG00000052131.7, intron 1 of 9) protein_coding-intron (ENSMUSG00000052131.7, intron 1 of 9) 1393 ENSMUSG00000052131.7 ENSMUSG00000052131 ENSMUST00000007449 Akr1b7 protein_coding Interval_155648 chr8 35599817 35600131 + 0 NA intron (ENSMUSG00000070056.6, intron 1 of 2) protein_coding-intron (ENSMUSG00000070056.6, intron 1 of 2) -11002 ENSMUSG00000097357.2 ENSMUSG00000097357 ENSMUST00000181322 Gm16793 bidirectional_promoter_lncRNA Interval_142741 chr6 145275686 145277366 + 0 NA Intergenic Intergenic 10126 ENSMUSG00000067344.7 ENSMUSG00000067344 ENSMUST00000119876 Rps25-ps1 processed_pseudogene Interval_56473 chr14 118986781 118988455 + 0 NA intron (ENSMUSG00000042104.18, intron 38 of 38) protein_coding-intron (ENSMUSG00000042104.18, intron 4 of 4) -3858 ENSMUSG00000115220.1 ENSMUSG00000115220 ENSMUST00000227218 Gm49768 lincRNA Interval_128455 chr5 113402889 113403743 + 0 NA Intergenic Intergenic 46022 ENSMUSG00000053873.1 ENSMUSG00000053873 ENSMUST00000066573 Aym1 protein_coding Interval_15949 chr10 59564716 59565476 + 0 NA intron (ENSMUSG00000009647.13, intron 3 of 3) protein_coding-intron (ENSMUSG00000009647.13, intron 1 of 7) -50968 ENSMUSG00000071280.2 ENSMUSG00000071280 ENSMUST00000238281 Gm10322 antisense Interval_161289 chr8 119544248 119545838 + 0 NA intron (ENSMUSG00000031835.16, intron 3 of 21) protein_coding-intron (ENSMUSG00000031835.16, intron 3 of 22) 13398 ENSMUSG00000031835.16 ENSMUSG00000031835 ENSMUST00000212813 Mbtps1 protein_coding Interval_155312 chr8 31158383 31159988 + 0 NA TTS (ENSMUSG00000031578.5) protein_coding-TTS (ENSMUSG00000031578.5) 8858 ENSMUSG00000031577.10 ENSMUSG00000031577 ENSMUST00000209986 Tti2 protein_coding Interval_11671 chr1 184496878 184498151 + 0 NA Intergenic Intergenic 54534 ENSMUSG00000104419.1 ENSMUSG00000104419 ENSMUST00000191770 2900092O11Rik TEC Interval_9456 chr1 157320631 157321278 + 0 NA intron (ENSMUSG00000070565.11, intron 1 of 2) protein_coding-intron (ENSMUSG00000070565.11, intron 1 of 17) 29089 ENSMUSG00000102326.1 ENSMUSG00000102326 ENSMUST00000193958 Gm37788 TEC Interval_157238 chr8 68313739 68314420 + 0 NA intron (ENSMUSG00000053886.4, intron 3 of 7) protein_coding-intron (ENSMUSG00000053886.4, intron 4 of 8) 4001 ENSMUSG00000110650.1 ENSMUSG00000110650 ENSMUST00000212440 Gm19170 processed_pseudogene Interval_145774 chr7 38209927 38210298 + 0 NA Intergenic Intergenic 17904 ENSMUSG00000074170.5 ENSMUSG00000074170 ENSMUST00000098513 Plekhf1 protein_coding Interval_117988 chr4 127484577 127485584 + 0 NA intron (ENSMUSG00000087470.2, intron 2 of 5) lincRNA-intron (ENSMUSG00000087470.2, intron 2 of 5) 10178 ENSMUSG00000087470.2 ENSMUSG00000087470 ENSMUST00000146587 A630031M04Rik lincRNA Interval_123579 chr5 33599136 33599359 + 0 NA Intergenic Intergenic 29815 ENSMUSG00000037339.17 ENSMUSG00000037339 ENSMUST00000140043 Fam53a protein_coding Interval_57996 chr15 25915148 25916244 + 0 NA intron (ENSMUSG00000022270.16, intron 1 of 2) protein_coding-intron (ENSMUSG00000022270.16, intron 3 of 8) 5272 ENSMUSG00000022270.16 ENSMUSG00000022270 ENSMUST00000228306 Retreg1 protein_coding Interval_5168 chr1 86201066 86202255 + 0 NA promoter-TSS (ENSMUSG00000062590.13) protein_coding-promoter-TSS (ENSMUSG00000062590.13) 46861 ENSMUSG00000062590.13 ENSMUSG00000062590 ENSMUST00000126579 Armc9 protein_coding Interval_147466 chr7 67523264 67524138 + 0 NA intron (ENSMUSG00000030556.13, intron 5 of 5) protein_coding-intron (ENSMUSG00000030556.13, intron 9 of 9) 47002 ENSMUSG00000087926.1 ENSMUSG00000087926 ENSMUST00000157301 Gm23233 snoRNA Interval_47305 chr13 80940810 80941058 + 0 NA promoter-TSS (ENSMUSG00000114554.1) lincRNA-promoter-TSS (ENSMUSG00000114554.1) 523 ENSMUSG00000114554.1 ENSMUSG00000114554 ENSMUST00000224509 5430425K12Rik lincRNA Interval_165981 chr9 55174355 55175239 + 0 NA intron (ENSMUSG00000032307.16, intron 3 of 12) protein_coding-intron (ENSMUSG00000032307.16, intron 3 of 12) -20048 ENSMUSG00000032307.16 ENSMUSG00000032307 ENSMUST00000148468 Ube2q2 protein_coding Interval_143051 chr6 148927953 148928156 + 0 NA TTS (ENSMUSG00000039985.14) protein_coding-TTS (ENSMUSG00000039985.14) -7519 ENSMUSG00000108258.1 ENSMUSG00000108258 ENSMUST00000203924 Gm43913 lincRNA Interval_115639 chr4 101533539 101533889 + 0 NA intron (ENSMUSG00000028528.17, intron 2 of 6) protein_coding-intron (ENSMUSG00000028528.17, intron 1 of 18) -21381 ENSMUSG00000089446.1 ENSMUSG00000089446 ENSMUST00000158821 Gm22533 misc_RNA Interval_141618 chr6 131381902 131382895 + 0 NA intron (ENSMUSG00000030189.15, intron 3 of 8) protein_coding-intron (ENSMUSG00000030189.15, intron 3 of 9) -1992 ENSMUSG00000065036.1 ENSMUSG00000065036 ENSMUST00000083102 Gm22362 snoRNA Interval_70571 chr17 12079133 12079637 + 0 NA Intergenic Intergenic -39944 ENSMUSG00000023827.8 ENSMUSG00000023827 ENSMUST00000167905 Agpat4 protein_coding Interval_82132 chr18 67921037 67922083 + 0 NA Intergenic Intergenic 13932 ENSMUSG00000118326.1 ENSMUSG00000118326 ENSMUST00000235570 Gm8887 processed_pseudogene Interval_45247 chr13 53475530 53476664 + 0 NA Intergenic Intergenic -3023 ENSMUSG00000021469.9 ENSMUSG00000021469 ENSMUST00000188606 Msx2 protein_coding Interval_62048 chr15 86085220 86086302 + 0 NA intron (ENSMUSG00000035900.18, intron 1 of 1) protein_coding-intron (ENSMUSG00000035900.18, intron 1 of 18) 4299 ENSMUSG00000089680.1 ENSMUSG00000089680 ENSMUST00000159271 Gm15722 antisense Interval_5698 chr1 91024412 91025028 + 0 NA intron (ENSMUSG00000026305.15, intron 1 of 12) protein_coding-intron (ENSMUSG00000026305.15, intron 1 of 12) -28866 ENSMUSG00000026305.15 ENSMUSG00000026305 ENSMUST00000187532 Lrrfip1 protein_coding Interval_15721 chr10 54671537 54672172 + 0 NA promoter-TSS (ENSMUSG00000112882.1) processed_pseudogene-promoter-TSS (ENSMUSG00000112882.1) -150 ENSMUSG00000112882.1 ENSMUSG00000112882 ENSMUST00000218122 Gm47970 processed_pseudogene Interval_169534 chr9 98954755 98957438 + 0 NA promoter-TSS (ENSMUSG00000097072.7) processed_transcript-promoter-TSS (ENSMUSG00000097072.7) 808 ENSMUSG00000050397.4 ENSMUSG00000050397 ENSMUST00000051312 Foxl2 protein_coding Interval_115585 chr4 101118415 101118862 + 0 NA intron (ENSMUSG00000035275.14, intron 4 of 7) protein_coding-intron (ENSMUSG00000035275.14, intron 4 of 11) -14988 ENSMUSG00000088551.1 ENSMUSG00000088551 ENSMUST00000157926 Gm22100 snRNA Interval_14573 chr10 36177478 36177725 + 0 NA Intergenic Intergenic 81725 ENSMUSG00000110987.1 ENSMUSG00000110987 ENSMUST00000215218 Gm47048 processed_pseudogene Interval_39014 chr12 84468297 84469137 + 0 NA intron (ENSMUSG00000085793.2, intron 4 of 4) protein_coding-intron (ENSMUSG00000085793.2, intron 5 of 5) -17769 ENSMUSG00000021238.11 ENSMUSG00000021238 ENSMUST00000222656 Aldh6a1 protein_coding Interval_68174 chr16 66837206 66837426 + 0 NA intron (ENSMUSG00000064115.13, intron 2 of 3) protein_coding-intron (ENSMUSG00000064115.13, intron 3 of 9) -55187 ENSMUSG00000045178.10 ENSMUSG00000045178 ENSMUST00000050665 4933411O13Rik antisense Interval_36877 chr12 54878811 54880420 + 0 NA Intergenic Intergenic -16817 ENSMUSG00000062929.8 ENSMUSG00000062929 ENSMUST00000223095 Cfl2 protein_coding Interval_145147 chr7 30299265 30299584 + 0 NA TTS (ENSMUSG00000013921.15) protein_coding-TTS (ENSMUSG00000013921.15) 7695 ENSMUSG00000013921.15 ENSMUSG00000013921 ENSMUST00000132844 Clip3 protein_coding Interval_22547 chr11 11693959 11694233 + 0 NA intron (ENSMUSG00000018654.17, intron 1 of 7) protein_coding-intron (ENSMUSG00000018654.17, intron 1 of 6) 2343 ENSMUSG00000073145.6 ENSMUSG00000073145 ENSMUST00000132007 Gm12000 antisense Interval_96744 chr2 127649452 127650380 + 0 NA intron (ENSMUSG00000027375.14, intron 1 of 3) protein_coding-intron (ENSMUSG00000027375.14, intron 1 of 2) 6779 ENSMUSG00000027375.14 ENSMUSG00000027375 ENSMUST00000028853 Mal protein_coding Interval_24267 chr11 31959389 31960313 + 0 NA Intergenic Intergenic -5741 ENSMUSG00000020299.6 ENSMUSG00000020299 ENSMUST00000102829 4930524B15Rik protein_coding Interval_22086 chr11 6261655 6262177 + 0 NA intron (ENSMUSG00000004393.10, intron 11 of 13) protein_coding-intron (ENSMUSG00000004393.10, intron 11 of 13) 5830 ENSMUSG00000004393.10 ENSMUSG00000004393 ENSMUST00000155874 Ddx56 protein_coding Interval_121625 chr5 4024017 4024587 + 0 NA intron (ENSMUSG00000040407.18, intron 1 of 3) protein_coding-intron (ENSMUSG00000040407.18, intron 21 of 47) 887 ENSMUSG00000040407.18 ENSMUSG00000040407 ENSMUST00000196837 Akap9 protein_coding Interval_12536 chr1 194962001 194962782 + 0 NA intron (ENSMUSG00000097325.2, intron 2 of 4) antisense-intron (ENSMUSG00000097325.2, intron 2 of 4) 14569 ENSMUSG00000097325.2 ENSMUSG00000097325 ENSMUST00000180780 Gm16897 antisense Interval_19503 chr10 100629672 100629905 + 0 NA Intergenic Intergenic -21842 ENSMUSG00000112328.1 ENSMUSG00000112328 ENSMUST00000219685 Gm47325 processed_pseudogene Interval_165711 chr9 51298510 51298855 + 0 NA intron (ENSMUSG00000036027.13, intron 2 of 4) protein_coding-intron (ENSMUSG00000036027.13, intron 2 of 4) -19031 ENSMUSG00000079559.5 ENSMUSG00000079559 ENSMUST00000239415 Colca2 protein_coding Interval_33150 chr11 114781174 114781435 + 0 NA exon (ENSMUSG00000010021.13, exon 7 of 20) protein_coding-exon (ENSMUSG00000010021.13, exon 7 of 20) 14606 ENSMUSG00000000202.9 ENSMUSG00000000202 ENSMUST00000137965 Btbd17 protein_coding Interval_75494 chr17 67358736 67359019 + 0 NA Intergenic Intergenic -192730 ENSMUSG00000087829.1 ENSMUSG00000087829 ENSMUST00000157204 Gm22277 misc_RNA Interval_70997 chr17 17061462 17062117 + 0 NA Intergenic Intergenic -2324 ENSMUSG00000096696.1 ENSMUSG00000096696 ENSMUST00000127027 Zfp960 protein_coding Interval_45997 chr13 59871380 59871667 + 0 NA Intergenic Intergenic -2119 ENSMUSG00000114669.1 ENSMUSG00000114669 ENSMUST00000225895 Gm48384 lincRNA Interval_25210 chr11 45423702 45424663 + 0 NA Intergenic Intergenic -3398 ENSMUSG00000085476.1 ENSMUSG00000085476 ENSMUST00000123422 Gm12162 lincRNA Interval_26386 chr11 57552881 57555893 + 0 NA Intergenic Intergenic -18125 ENSMUSG00000086028.1 ENSMUSG00000086028 ENSMUST00000128521 Gm12243 lincRNA Interval_25153 chr11 44580902 44582023 + 0 NA Intergenic Intergenic -4855 ENSMUSG00000086501.1 ENSMUSG00000086501 ENSMUST00000128652 4930597A21Rik lincRNA Interval_118101 chr4 128956926 128957638 + 0 NA intron (ENSMUSG00000028789.16, intron 2 of 8) protein_coding-intron (ENSMUSG00000028789.16, intron 4 of 10) 5146 ENSMUSG00000028789.16 ENSMUSG00000028789 ENSMUST00000156739 Azin2 protein_coding Interval_97493 chr2 137682915 137683169 + 0 NA intron (ENSMUSG00000085640.1, intron 2 of 4) lincRNA-intron (ENSMUSG00000085640.1, intron 2 of 4) 19607 ENSMUSG00000085640.1 ENSMUSG00000085640 ENSMUST00000134833 Gm14064 lincRNA Interval_170935 chr9 112489470 112489840 + 0 NA promoter-TSS (ENSMUSG00000098345.1) miRNA-promoter-TSS (ENSMUSG00000098345.1) 39 ENSMUSG00000098345.1 ENSMUSG00000098345 ENSMUST00000183711 Gm27847 miRNA Interval_79866 chr18 35638566 35640782 + 0 NA Intergenic Intergenic 8695 ENSMUSG00000024353.5 ENSMUSG00000024353 ENSMUST00000237462 Mzb1 protein_coding Interval_164596 chr9 39740143 39741576 + 0 NA Intergenic Intergenic -5390 ENSMUSG00000055820.2 ENSMUSG00000055820 ENSMUST00000069561 Olfr967 protein_coding Interval_116686 chr4 116650959 116652099 + 0 NA promoter-TSS (ENSMUSG00000028692.14) protein_coding-promoter-TSS (ENSMUSG00000028692.14) -2055 ENSMUSG00000028692.14 ENSMUSG00000028692 ENSMUST00000128059 Akr1a1 protein_coding Interval_27560 chr11 68706773 68707022 + 0 NA intron (ENSMUSG00000020900.15, intron 2 of 12) protein_coding-intron (ENSMUSG00000020900.15, intron 2 of 42) 14743 ENSMUSG00000020900.15 ENSMUSG00000020900 ENSMUST00000139059 Myh10 protein_coding Interval_150909 chr7 116292704 116293853 + 0 NA intron (ENSMUSG00000045659.18, intron 3 of 18) protein_coding-intron (ENSMUSG00000045659.18, intron 3 of 26) -10535 ENSMUSG00000108650.1 ENSMUSG00000108650 ENSMUST00000205675 Gm44867 sense_intronic Interval_60983 chr15 78509388 78510214 + 0 NA Intergenic Intergenic -16045 ENSMUSG00000068227.9 ENSMUSG00000068227 ENSMUST00000163494 Il2rb protein_coding Interval_124334 chr5 44100342 44102082 + 0 NA exon (ENSMUSG00000072962.3, exon 1 of 1) antisense-exon (ENSMUSG00000072962.3, exon 1 of 1) 770 ENSMUSG00000072962.3 ENSMUSG00000072962 ENSMUST00000197463 Gm16401 antisense Interval_100967 chr2 173709863 173710467 + 0 NA Intergenic Intergenic -9017 ENSMUSG00000098588.1 ENSMUSG00000098588 ENSMUST00000183857 Mir6340 miRNA Interval_126092 chr5 77329451 77330822 + 0 NA intron (ENSMUSG00000029250.5, intron 10 of 24) protein_coding-intron (ENSMUSG00000029250.5, intron 10 of 24) -10232 ENSMUSG00000029250.5 ENSMUSG00000029250 ENSMUST00000150191 Polr2b protein_coding Interval_58980 chr15 41260482 41261828 + 0 NA Intergenic Intergenic -17997 ENSMUSG00000116178.1 ENSMUSG00000116178 ENSMUST00000229823 Gm49529 processed_pseudogene Interval_105860 chr3 89788655 89790173 + 0 NA Intergenic Intergenic -3104 ENSMUSG00000118654.1 ENSMUSG00000118654 ENSMUST00000239422 AC102392.1 unitary_pseudogene Interval_52081 chr14 35384951 35385195 + 0 NA intron (ENSMUSG00000041078.7, intron 8 of 15) protein_coding-intron (ENSMUSG00000041078.7, intron 8 of 15) -65275 ENSMUSG00000041078.7 ENSMUSG00000041078 ENSMUST00000173307 Grid1 protein_coding Interval_95328 chr2 106623456 106624321 + 0 NA Intergenic Intergenic 26446 ENSMUSG00000085218.7 ENSMUSG00000085218 ENSMUST00000139514 BB218582 processed_transcript Interval_95536 chr2 111745319 111745547 + 0 NA Intergenic Intergenic 5328 ENSMUSG00000084134.1 ENSMUSG00000084134 ENSMUST00000118569 Gm13930 processed_pseudogene Interval_41949 chr13 5178448 5178751 + 0 NA Intergenic Intergenic 11335 ENSMUSG00000077473.1 ENSMUSG00000077473 ENSMUST00000104285 Gm24790 snoRNA Interval_60982 chr15 78491835 78492162 + 0 NA intron (ENSMUSG00000068227.9, intron 1 of 9) protein_coding-intron (ENSMUSG00000068227.9, intron 1 of 9) 1758 ENSMUSG00000068227.9 ENSMUSG00000068227 ENSMUST00000163494 Il2rb protein_coding Interval_101087 chr2 177504418 177505622 + 0 NA intron (ENSMUSG00000094786.1, intron 2 of 3) protein_coding-intron (ENSMUSG00000094786.1, intron 1 of 3) 6805 ENSMUSG00000094786.1 ENSMUSG00000094786 ENSMUST00000108940 Gm14403 protein_coding Interval_167090 chr9 65188606 65189234 + 0 NA Intergenic Intergenic -6433 ENSMUSG00000032392.11 ENSMUSG00000032392 ENSMUST00000213766 Parp16 protein_coding Interval_121353 chr4 155189446 155190606 + 0 NA intron (ENSMUSG00000029050.15, intron 2 of 7) protein_coding-intron (ENSMUSG00000029050.15, intron 1 of 6) -1730 ENSMUSG00000029050.15 ENSMUSG00000029050 ENSMUST00000030917 Ski protein_coding Interval_159823 chr8 104093381 104094071 + 0 NA intron (ENSMUSG00000110053.1, intron 1 of 2) antisense-intron (ENSMUSG00000110053.1, intron 1 of 2) 12147 ENSMUSG00000110053.1 ENSMUSG00000110053 ENSMUST00000210896 Gm29682 antisense Interval_80672 chr18 46153828 46154360 + 0 NA Intergenic Intergenic 21520 ENSMUSG00000033949.12 ENSMUSG00000033949 ENSMUST00000237526 Trim36 protein_coding Interval_72349 chr17 29350980 29351416 + 0 NA Intergenic Intergenic -14060 ENSMUSG00000024012.18 ENSMUSG00000024012 ENSMUST00000132753 Mtch1 protein_coding Interval_121568 chr5 3514967 3515756 + 0 NA intron (ENSMUSG00000040274.11, intron 5 of 7) protein_coding-intron (ENSMUSG00000040274.11, intron 4 of 6) -15289 ENSMUSG00000105534.1 ENSMUSG00000105534 ENSMUST00000196630 Gm42435 antisense Interval_54822 chr14 75505212 75505997 + 0 NA intron (ENSMUSG00000091722.2, intron 1 of 1) protein_coding-intron (ENSMUSG00000091722.2, intron 1 of 1) 49622 ENSMUSG00000091722.2 ENSMUSG00000091722 ENSMUST00000164848 Siah3 protein_coding Interval_155571 chr8 34698873 34699148 + 0 NA Intergenic Intergenic -39641 ENSMUSG00000109846.1 ENSMUSG00000109846 ENSMUST00000210130 Gm45627 lincRNA Interval_9830 chr1 162739535 162741161 + 0 NA promoter-TSS (ENSMUSG00000040225.15) protein_coding-promoter-TSS (ENSMUSG00000040225.15) -9627 ENSMUSG00000040225.15 ENSMUSG00000040225 ENSMUST00000183286 Prrc2c protein_coding Interval_164720 chr9 40793708 40795512 + 0 NA Intergenic Intergenic -8973 ENSMUSG00000096263.1 ENSMUSG00000096263 ENSMUST00000101927 Snord14c snoRNA Interval_47201 chr13 77934628 77934868 + 0 NA intron (ENSMUSG00000064138.14, intron 5 of 5) protein_coding-intron (ENSMUSG00000064138.14, intron 6 of 9) -90154 ENSMUSG00000093668.3 ENSMUSG00000093668 ENSMUST00000175955 Pou5f2 protein_coding Interval_59991 chr15 63351143 63351457 + 0 NA intron (ENSMUSG00000115520.2, intron 6 of 8) lincRNA-intron (ENSMUSG00000115520.2, intron 6 of 8) 95396 ENSMUSG00000115369.1 ENSMUSG00000115369 ENSMUST00000226449 Gm49014 lincRNA Interval_155889 chr8 40652792 40653783 + 0 NA Intergenic Intergenic -18490 ENSMUSG00000039431.16 ENSMUSG00000039431 ENSMUST00000174537 Mtmr7 protein_coding Interval_164445 chr9 37076273 37077188 + 0 NA intron (ENSMUSG00000035934.16, intron 2 of 4) protein_coding-intron (ENSMUSG00000035934.16, intron 2 of 12) -41926 ENSMUSG00000110722.1 ENSMUSG00000110722 ENSMUST00000215174 Gm48716 antisense Interval_119791 chr4 140011002 140011323 + 0 NA Intergenic Intergenic -43136 ENSMUSG00000078234.6 ENSMUSG00000078234 ENSMUST00000105031 Klhdc7a protein_coding Interval_54500 chr14 70287187 70287428 + 0 NA intron (ENSMUSG00000022092.11, intron 1 of 14) protein_coding-intron (ENSMUSG00000022092.11, intron 1 of 13) 1970 ENSMUSG00000022092.11 ENSMUSG00000022092 ENSMUST00000228265 Ppp3cc protein_coding Interval_62774 chr15 96781349 96781949 + 0 NA Intergenic Intergenic -14571 ENSMUSG00000095638.2 ENSMUSG00000095638 ENSMUST00000177677 Gm8888 processed_pseudogene Interval_52646 chr14 48211281 48211799 + 0 NA intron (ENSMUSG00000021846.9, intron 2 of 2) protein_coding-intron (ENSMUSG00000021846.9, intron 2 of 5) 14780 ENSMUSG00000115555.1 ENSMUSG00000115555 ENSMUST00000227419 Gm49307 TEC Interval_157241 chr8 68334741 68336807 + 0 NA intron (ENSMUSG00000053886.4, intron 6 of 7) protein_coding-intron (ENSMUSG00000053886.4, intron 7 of 8) -17694 ENSMUSG00000110650.1 ENSMUSG00000110650 ENSMUST00000212440 Gm19170 processed_pseudogene Interval_89045 chr2 14988186 14988807 + 0 NA TTS (ENSMUSG00000057914.15) protein_coding-TTS (ENSMUSG00000057914.15) 22298 ENSMUSG00000104271.1 ENSMUSG00000104271 ENSMUST00000195585 Gm37891 TEC Interval_37569 chr12 69932191 69932926 + 0 NA TTS (ENSMUSG00000021066.9) protein_coding-TTS (ENSMUSG00000021066.9) 1654 ENSMUSG00000065327.1 ENSMUSG00000065327 ENSMUST00000083393 Gm22058 misc_RNA Interval_122967 chr5 28037236 28038614 + 0 NA intron (ENSMUSG00000097673.1, intron 2 of 2) lincRNA-intron (ENSMUSG00000097673.1, intron 2 of 2) -1519 ENSMUSG00000106030.1 ENSMUSG00000106030 ENSMUST00000196656 Gm43611 TEC Interval_146906 chr7 55759646 55760354 + 0 NA Intergenic Intergenic -8236 ENSMUSG00000051504.18 ENSMUSG00000051504 ENSMUST00000154933 Siglech protein_coding Interval_164996 chr9 43772957 43774504 + 0 NA intron (ENSMUSG00000032012.9, intron 1 of 7) protein_coding-intron (ENSMUSG00000032012.9, intron 1 of 5) 29086 ENSMUSG00000032012.9 ENSMUSG00000032012 ENSMUST00000180221 Nectin1 protein_coding Interval_17429 chr10 76577421 76578220 + 0 NA intron (ENSMUSG00000001155.13, intron 2 of 11) protein_coding-intron (ENSMUSG00000001155.13, intron 2 of 13) -7288 ENSMUSG00000085468.1 ENSMUSG00000085468 ENSMUST00000136382 Gm15343 antisense Interval_42852 chr13 20427255 20428147 + 0 NA intron (ENSMUSG00000041112.17, intron 15 of 21) protein_coding-intron (ENSMUSG00000041112.17, intron 15 of 21) 45789 ENSMUSG00000113313.1 ENSMUSG00000113313 ENSMUST00000221484 Gm32036 antisense Interval_19405 chr10 98973347 98973676 + 0 NA intron (ENSMUSG00000019943.10, intron 2 of 8) protein_coding-intron (ENSMUSG00000019943.10, intron 2 of 20) -17369 ENSMUSG00000019943.10 ENSMUSG00000019943 ENSMUST00000218419 Atp2b1 protein_coding Interval_155588 chr8 34920126 34920537 + 0 NA intron (ENSMUSG00000031529.5, intron 2 of 26) protein_coding-intron (ENSMUSG00000031529.5, intron 2 of 26) -1563 ENSMUSG00000031529.5 ENSMUSG00000031529 ENSMUST00000211065 Tnks protein_coding Interval_174406 chrX 151520249 151521445 + 0 NA promoter-TSS (ENSMUSG00000041229.15) protein_coding-promoter-TSS (ENSMUSG00000041229.15) 175 ENSMUSG00000041229.15 ENSMUSG00000041229 ENSMUST00000138318 Phf8 protein_coding Interval_2917 chr1 49885223 49886169 + 0 NA Intergenic Intergenic -171086 ENSMUSG00000101760.1 ENSMUSG00000101760 ENSMUST00000190905 Gm8384 processed_pseudogene Interval_102255 chr3 20023464 20024618 + 0 NA intron (ENSMUSG00000027615.14, intron 5 of 6) protein_coding-intron (ENSMUSG00000027615.14, intron 5 of 16) 11253 ENSMUSG00000027615.14 ENSMUSG00000027615 ENSMUST00000133094 Hps3 protein_coding Interval_45380 chr13 54782863 54783876 + 0 NA promoter-TSS (ENSMUSG00000074895.10) protein_coding-promoter-TSS (ENSMUSG00000074895.10) -278 ENSMUSG00000084949.1 ENSMUSG00000084949 ENSMUST00000124055 Gm16249 antisense Interval_137440 chr6 72467101 72468562 + 0 NA Intergenic Intergenic -28288 ENSMUSG00000053907.10 ENSMUSG00000053907 ENSMUST00000206783 Mat2a protein_coding Interval_50091 chr14 7931917 7932570 + 0 NA intron (ENSMUSG00000025278.9, intron 38 of 45) protein_coding-intron (ENSMUSG00000025278.9, intron 38 of 45) -25045 ENSMUSG00000109649.1 ENSMUSG00000109649 ENSMUST00000211339 Gm45521 protein_coding Interval_15096 chr10 42545385 42546924 + 0 NA Intergenic Intergenic 34620 ENSMUSG00000019803.11 ENSMUSG00000019803 ENSMUST00000143891 Nr2e1 protein_coding Interval_123587 chr5 33638988 33639467 + 0 NA TTS (ENSMUSG00000004642.13) protein_coding-TTS (ENSMUSG00000004642.13) 9302 ENSMUSG00000097271.1 ENSMUSG00000097271 ENSMUST00000181102 Gm9903 protein_coding Interval_136590 chr6 56215393 56215666 + 0 NA intron (ENSMUSG00000004347.17, intron 4 of 19) protein_coding-intron (ENSMUSG00000004347.17, intron 2 of 18) -42498 ENSMUSG00000106152.1 ENSMUSG00000106152 ENSMUST00000198921 Gm44413 miRNA Interval_122814 chr5 25705181 25706411 + 0 NA promoter-TSS (ENSMUSG00000028933.11) protein_coding-promoter-TSS (ENSMUSG00000028933.11) -23 ENSMUSG00000028933.11 ENSMUSG00000028933 ENSMUST00000131308 Xrcc2 protein_coding Interval_91833 chr2 50004556 50004803 + 0 NA Intergenic Intergenic -97799 ENSMUSG00000088825.1 ENSMUSG00000088825 ENSMUST00000158200 Gm25223 misc_RNA Interval_65352 chr16 21787391 21788870 + 0 NA promoter-TSS (ENSMUSG00000022853.7) protein_coding-promoter-TSS (ENSMUSG00000022853.7) -323 ENSMUSG00000022853.7 ENSMUSG00000022853 ENSMUST00000023559 Ehhadh protein_coding Interval_160746 chr8 111924747 111925608 + 0 NA TTS (ENSMUSG00000031951.8) protein_coding-TTS (ENSMUSG00000031951.8) 2983 ENSMUSG00000031951.8 ENSMUSG00000031951 ENSMUST00000213050 Tmem231 protein_coding Interval_3985 chr1 65436911 65437698 + 0 NA Intergenic Intergenic 1681 ENSMUSG00000100340.1 ENSMUSG00000100340 ENSMUST00000187755 Gm28923 processed_pseudogene Interval_66937 chr16 38622430 38624152 + 0 NA exon (ENSMUSG00000022799.4, exon 6 of 6) protein_coding-exon (ENSMUSG00000022799.4, exon 6 of 6) -49991 ENSMUSG00000091238.1 ENSMUSG00000091238 ENSMUST00000168897 Gm17103 antisense Interval_52786 chr14 50018465 50019197 + 0 NA Intergenic Intergenic 21544 ENSMUSG00000068437.4 ENSMUSG00000068437 ENSMUST00000089844 Olfr725 protein_coding Interval_29559 chr11 84906541 84907908 + 0 NA exon (ENSMUSG00000020527.14, exon 18 of 22) protein_coding-exon (ENSMUSG00000020527.14, exon 18 of 22) 9100 ENSMUSG00000020526.12 ENSMUSG00000020526 ENSMUST00000156046 Znhit3 protein_coding Interval_163074 chr9 15029011 15029885 + 0 NA intron (ENSMUSG00000031934.14, intron 1 of 4) protein_coding-intron (ENSMUSG00000031934.14, intron 1 of 3) 14349 ENSMUSG00000031934.14 ENSMUSG00000031934 ENSMUST00000169288 Panx1 protein_coding Interval_69816 chr16 96896659 96896951 + 0 NA intron (ENSMUSG00000050272.10, intron 3 of 32) protein_coding-intron (ENSMUSG00000050272.10, intron 3 of 32) -21927 ENSMUSG00000117324.1 ENSMUSG00000117324 ENSMUST00000232718 Gm32432 antisense Interval_53494 chr14 57831888 57832084 + 0 NA promoter-TSS (ENSMUSG00000065374.1) snRNA-promoter-TSS (ENSMUSG00000065374.1) -777 ENSMUSG00000065374.1 ENSMUSG00000065374 ENSMUST00000083440 Gm22738 snRNA Interval_99354 chr2 160029390 160029639 + 0 NA intron (ENSMUSG00000086653.1, intron 3 of 3) lincRNA-intron (ENSMUSG00000086653.1, intron 3 of 3) 12861 ENSMUSG00000086653.1 ENSMUSG00000086653 ENSMUST00000140319 9130015L21Rik lincRNA Interval_99767 chr2 164785493 164786476 + 0 NA promoter-TSS (ENSMUSG00000050373.13) protein_coding-promoter-TSS (ENSMUSG00000050373.13) -5668 ENSMUSG00000050373.13 ENSMUSG00000050373 ENSMUST00000174342 Snx21 protein_coding Interval_127574 chr5 105485847 105486129 + 0 NA exon (ENSMUSG00000070639.5, exon 5 of 5) protein_coding-exon (ENSMUSG00000070639.5, exon 5 of 5) -9482 ENSMUSG00000105826.1 ENSMUSG00000105826 ENSMUST00000196534 Gm42141 TEC Interval_77622 chr17 93250727 93251021 + 0 NA Intergenic Intergenic -4060 ENSMUSG00000094473.1 ENSMUSG00000094473 ENSMUST00000178746 Gm25935 snRNA Interval_44428 chr13 44778830 44779205 + 0 NA intron (ENSMUSG00000038518.15, intron 2 of 4) protein_coding-intron (ENSMUSG00000038518.15, intron 2 of 18) 47647 ENSMUSG00000038518.15 ENSMUSG00000038518 ENSMUST00000173003 Jarid2 protein_coding Interval_37837 chr12 72407283 72409137 + 0 NA intron (ENSMUSG00000021087.18, intron 1 of 8) protein_coding-intron (ENSMUSG00000021087.18, intron 1 of 8) -33825 ENSMUSG00000021090.16 ENSMUSG00000021090 ENSMUST00000221282 Lrrc9 protein_coding Interval_171085 chr9 114460514 114461005 + 0 NA intron (ENSMUSG00000045594.10, intron 13 of 14) protein_coding-intron (ENSMUSG00000045594.10, intron 14 of 15) 44157 ENSMUSG00000047898.7 ENSMUSG00000047898 ENSMUST00000215959 Ccr4 protein_coding Interval_128124 chr5 111135494 111135964 + 0 NA intron (ENSMUSG00000033209.17, intron 5 of 22) protein_coding-intron (ENSMUSG00000033209.17, intron 5 of 23) -22582 ENSMUSG00000106153.1 ENSMUSG00000106153 ENSMUST00000198098 Gm43677 TEC Interval_65890 chr16 30080956 30084073 + 0 NA Intergenic Intergenic 10368 ENSMUSG00000116997.1 ENSMUSG00000116997 ENSMUST00000232024 Gm20040 processed_pseudogene Interval_130807 chr5 130844467 130844774 + 0 NA exon (ENSMUSG00000060371.12, exon 6 of 6) protein_coding-exon (ENSMUSG00000060371.12, exon 6 of 6) 23217 ENSMUSG00000106694.1 ENSMUSG00000106694 ENSMUST00000200788 Gm42894 TEC Interval_87932 chr19 57182246 57182807 + 0 NA promoter-TSS (ENSMUSG00000025085.16) protein_coding-promoter-TSS (ENSMUSG00000025085.16) -91434 ENSMUSG00000117684.1 ENSMUSG00000117684 ENSMUST00000237596 4930449E18Rik antisense Interval_41360 chr12 113062243 113062529 + 0 NA TTS (ENSMUSG00000104729.1) miRNA-TTS (ENSMUSG00000104729.1) 1052 ENSMUSG00000104729.1 ENSMUSG00000104729 ENSMUST00000197963 Gm44471 miRNA Interval_127555 chr5 105195055 105196607 + 0 NA Intergenic Intergenic 26145 ENSMUSG00000105096.1 ENSMUSG00000105096 ENSMUST00000196634 Gbp10 protein_coding Interval_801 chr1 11458943 11459156 + 0 NA intron (ENSMUSG00000057715.13, intron 1 of 1) protein_coding-intron (ENSMUSG00000057715.13, intron 1 of 13) 42131 ENSMUSG00000103825.1 ENSMUSG00000103825 ENSMUST00000194502 Gm38178 TEC Interval_73981 chr17 45829206 45830766 + 0 NA Intergenic Intergenic -7663 ENSMUSG00000117139.1 ENSMUSG00000117139 ENSMUST00000233237 Gm35692 lincRNA Interval_44773 chr13 48512637 48513636 + 0 NA promoter-TSS (ENSMUSG00000053181.1) protein_coding-promoter-TSS (ENSMUSG00000053181.1) 258 ENSMUSG00000050954.15 ENSMUSG00000050954 ENSMUST00000177474 Zfp169 protein_coding Interval_52991 chr14 52810224 52811220 + 0 NA promoter-TSS (ENSMUSG00000094792.3) TR_V_gene-promoter-TSS (ENSMUSG00000094792.3) -212 ENSMUSG00000094792.3 ENSMUSG00000094792 ENSMUST00000103646 Trav10d TR_V_gene Interval_18909 chr10 93034133 93034554 + 0 NA intron (ENSMUSG00000020014.17, intron 14 of 67) protein_coding-intron (ENSMUSG00000020014.17, intron 14 of 17) -1381 ENSMUSG00000020014.17 ENSMUSG00000020014 ENSMUST00000171781 Cfap54 protein_coding Interval_86967 chr19 45248556 45249216 + 0 NA Intergenic Intergenic -13074 ENSMUSG00000025216.9 ENSMUSG00000025216 ENSMUST00000099401 Lbx1 protein_coding Interval_147407 chr7 66516235 66517321 + 0 NA Intergenic Intergenic 48847 ENSMUSG00000109330.1 ENSMUSG00000109330 ENSMUST00000208155 Gm44754 processed_pseudogene Interval_162993 chr9 14330745 14330985 + 0 NA exon (ENSMUSG00000032009.8, exon 10 of 10) protein_coding-exon (ENSMUSG00000032009.8, exon 10 of 10) -4747 ENSMUSG00000111555.1 ENSMUSG00000111555 ENSMUST00000216728 Gm47326 lincRNA Interval_100986 chr2 173867608 173867818 + 0 NA Intergenic Intergenic -20043 ENSMUSG00000085938.1 ENSMUSG00000085938 ENSMUST00000138925 Gm14371 unprocessed_pseudogene Interval_148811 chr7 88383125 88383399 + 0 NA Intergenic Intergenic 39293 ENSMUSG00000077693.1 ENSMUSG00000077693 ENSMUST00000104505 Gm25345 snoRNA Interval_91620 chr2 44866199 44866554 + 0 NA intron (ENSMUSG00000036890.13, intron 1 of 5) protein_coding-intron (ENSMUSG00000036890.13, intron 1 of 4) -4101 ENSMUSG00000036890.13 ENSMUSG00000036890 ENSMUST00000133442 Gtdc1 protein_coding Interval_169523 chr9 98856086 98857119 + 0 NA exon (ENSMUSG00000063058.2, exon 1 of 1) protein_coding-exon (ENSMUSG00000063058.2, exon 1 of 1) 108 ENSMUSG00000063058.2 ENSMUSG00000063058 ENSMUST00000071302 Prr23a2 protein_coding Interval_48531 chr13 99868177 99868860 + 0 NA Intergenic Intergenic 32573 ENSMUSG00000021647.7 ENSMUSG00000021647 ENSMUST00000224142 Cartpt protein_coding Interval_54130 chr14 65573620 65573823 + 0 NA intron (ENSMUSG00000022031.6, intron 7 of 14) protein_coding-intron (ENSMUSG00000022031.6, intron 7 of 14) 19331 ENSMUSG00000022031.6 ENSMUSG00000022031 ENSMUST00000224743 Elp3 protein_coding Interval_140677 chr6 120492223 120494300 + 0 NA exon (ENSMUSG00000094626.1, exon 1 of 1) protein_coding-exon (ENSMUSG00000094626.1, exon 1 of 1) 546 ENSMUSG00000094626.1 ENSMUSG00000094626 ENSMUST00000178687 Tmem121b protein_coding Interval_163789 chr9 25757881 25759281 + 0 NA TTS (ENSMUSG00000111416.1) processed_pseudogene-TTS (ENSMUSG00000111416.1) 1026 ENSMUSG00000111416.1 ENSMUSG00000111416 ENSMUST00000215068 Gm48331 processed_pseudogene Interval_154431 chr8 16326330 16326651 + 0 NA intron (ENSMUSG00000060924.15, intron 10 of 10) protein_coding-intron (ENSMUSG00000060924.15, intron 10 of 69) 100487 ENSMUSG00000085150.1 ENSMUSG00000085150 ENSMUST00000129158 Gm16346 antisense Interval_149930 chr7 102750425 102750726 + 0 NA intron (ENSMUSG00000043366.16, intron 1 of 2) protein_coding-intron (ENSMUSG00000043366.16, intron 2 of 3) -4405 ENSMUSG00000043366.16 ENSMUSG00000043366 ENSMUST00000209365 Olfr78 protein_coding Interval_17526 chr10 77515295 77517531 + 0 NA promoter-TSS (ENSMUSG00000032977.9) protein_coding-promoter-TSS (ENSMUSG00000032977.9) -841 ENSMUSG00000032977.9 ENSMUSG00000032977 ENSMUST00000217681 Fam207a protein_coding Interval_110164 chr3 153904467 153906652 + 0 NA promoter-TSS (ENSMUSG00000005493.15) protein_coding-promoter-TSS (ENSMUSG00000005493.15) 5074 ENSMUSG00000064731.1 ENSMUSG00000064731 ENSMUST00000082797 Snord45b snoRNA Interval_89100 chr2 16344360 16345108 + 0 NA Intergenic Intergenic -293962 ENSMUSG00000026748.13 ENSMUSG00000026748 ENSMUST00000126173 Plxdc2 protein_coding Interval_16411 chr10 62780694 62780878 + 0 NA TTS (ENSMUSG00000112806.1) TEC-TTS (ENSMUSG00000112806.1) 2401 ENSMUSG00000112806.1 ENSMUSG00000112806 ENSMUST00000218355 Gm48146 TEC Interval_9520 chr1 158361983 158363555 + 0 NA exon (ENSMUSG00000026587.15, exon 1 of 23) protein_coding-exon (ENSMUSG00000026587.15, exon 1 of 23) 219 ENSMUSG00000026587.15 ENSMUSG00000026587 ENSMUST00000194658 Astn1 protein_coding Interval_13416 chr10 18040554 18041722 + 0 NA Intergenic Intergenic -18048 ENSMUSG00000078453.3 ENSMUSG00000078453 ENSMUST00000220433 Abracl protein_coding Interval_134803 chr6 31664434 31665089 + 0 NA intron (ENSMUSG00000084973.2, intron 1 of 3) lincRNA-intron (ENSMUSG00000086804.8, intron 1 of 2) 1281 ENSMUSG00000084973.2 ENSMUSG00000084973 ENSMUST00000130777 Gm13848 lincRNA Interval_30226 chr11 91144354 91144581 + 0 NA Intergenic Intergenic -283119 ENSMUSG00000083764.1 ENSMUSG00000083764 ENSMUST00000118450 Gm11516 processed_pseudogene Interval_122167 chr5 18535244 18535814 + 0 NA Intergenic Intergenic -45335 ENSMUSG00000104718.1 ENSMUSG00000104718 ENSMUST00000199456 Gm31752 lincRNA Interval_52516 chr14 47251166 47251365 + 0 NA intron (ENSMUSG00000037572.17, intron 1 of 1) protein_coding-intron (ENSMUSG00000037572.17, intron 16 of 24) -5995 ENSMUSG00000037572.17 ENSMUSG00000037572 ENSMUST00000139124 Wdhd1 protein_coding Interval_103905 chr3 54782342 54784357 + 0 NA intron (ENSMUSG00000027796.2, intron 2 of 5) protein_coding-intron (ENSMUSG00000027796.2, intron 2 of 5) 22417 ENSMUSG00000036615.7 ENSMUSG00000036615 ENSMUST00000182084 Rfxap protein_coding Interval_25821 chr11 51936134 51936376 + 0 NA Intergenic Intergenic -28127 ENSMUSG00000093325.1 ENSMUSG00000093325 ENSMUST00000175584 Gm26061 snRNA Interval_123022 chr5 28521490 28521678 + 0 NA intron (ENSMUSG00000097726.7, intron 1 of 6) antisense-intron (ENSMUSG00000097726.7, intron 1 of 6) -16986 ENSMUSG00000105775.1 ENSMUSG00000105775 ENSMUST00000200451 Gm10290 processed_pseudogene Interval_3409 chr1 58079696 58080488 + 0 NA intron (ENSMUSG00000063558.4, intron 23 of 34) protein_coding-intron (ENSMUSG00000063558.4, intron 23 of 34) -33094 ENSMUSG00000064294.12 ENSMUSG00000064294 ENSMUST00000160815 Aox3 protein_coding Interval_57902 chr15 25245995 25246269 + 0 NA Intergenic Intergenic -7302 ENSMUSG00000051237.7 ENSMUSG00000051237 ENSMUST00000228644 9230109A22Rik lincRNA Interval_2934 chr1 51271454 51272088 + 0 NA intron (ENSMUSG00000101799.1, intron 2 of 4) antisense-intron (ENSMUSG00000101799.1, intron 2 of 4) -17355 ENSMUSG00000045954.7 ENSMUSG00000045954 ENSMUST00000051572 Cavin2 protein_coding Interval_65213 chr16 20562802 20563368 + 0 NA Intergenic Intergenic 2943 ENSMUSG00000116942.1 ENSMUSG00000116942 ENSMUST00000231625 Gm49744 processed_pseudogene Interval_84008 chr19 6070765 6071598 + 0 NA TTS (ENSMUSG00000024797.14) protein_coding-TTS (ENSMUSG00000024797.14) -1493 ENSMUSG00000024797.14 ENSMUSG00000024797 ENSMUST00000160590 Vps51 protein_coding Interval_163387 chr9 21210799 21211398 + 0 NA exon (ENSMUSG00000032177.17, exon 10 of 10) protein_coding-exon (ENSMUSG00000032177.17, exon 10 of 10) -14273 ENSMUSG00000097439.6 ENSMUSG00000097439 ENSMUST00000193429 Gm16754 antisense Interval_145726 chr7 37825419 37826427 + 0 NA Intergenic Intergenic -1576 ENSMUSG00000064591.1 ENSMUSG00000064591 ENSMUST00000082657 Gm22302 snRNA Interval_119711 chr4 139395023 139395761 + 0 NA intron (ENSMUSG00000066036.14, intron 8 of 105) protein_coding-intron (ENSMUSG00000066036.14, intron 8 of 105) 14733 ENSMUSG00000066036.14 ENSMUSG00000066036 ENSMUST00000135534 Ubr4 protein_coding Interval_61538 chr15 82231420 82232649 + 0 NA intron (ENSMUSG00000116009.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000116009.1, intron 1 of 1) 1497 ENSMUSG00000116009.1 ENSMUSG00000116009 ENSMUST00000230791 Gm49503 lincRNA Interval_68324 chr16 73120246 73121184 + 0 NA intron (ENSMUSG00000116976.1, intron 2 of 2) processed_transcript-intron (ENSMUSG00000116976.1, intron 2 of 2) 48340 ENSMUSG00000116976.1 ENSMUSG00000116976 ENSMUST00000231486 4930500H12Rik processed_transcript Interval_113793 chr4 58646867 58647573 + 0 NA Intergenic Intergenic 11372 ENSMUSG00000086470.1 ENSMUSG00000086470 ENSMUST00000127456 Gm12580 lincRNA Interval_54859 chr14 75871918 75872258 + 0 NA Intergenic Intergenic 24183 ENSMUSG00000065147.1 ENSMUSG00000065147 ENSMUST00000083213 Snora31 snoRNA Interval_36208 chr12 39510059 39511380 + 0 NA intron (ENSMUSG00000113343.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000113343.1, intron 1 of 1) 10676 ENSMUSG00000113384.1 ENSMUSG00000113384 ENSMUST00000220472 Gm47859 lincRNA Interval_126884 chr5 96716292 96716650 + 0 NA intron (ENSMUSG00000034687.8, intron 47 of 73) protein_coding-intron (ENSMUSG00000034687.8, intron 47 of 73) 22893 ENSMUSG00000106526.1 ENSMUSG00000106526 ENSMUST00000200077 Gm42604 antisense Interval_35968 chr12 32932142 32932441 + 0 NA promoter-TSS (ENSMUSG00000112887.1) processed_pseudogene-promoter-TSS (ENSMUSG00000112887.1) -559 ENSMUSG00000112887.1 ENSMUSG00000112887 ENSMUST00000219303 Gm47961 processed_pseudogene Interval_130190 chr5 124827755 124828155 + 0 NA intron (ENSMUSG00000038011.15, intron 17 of 26) protein_coding-intron (ENSMUSG00000038011.15, intron 69 of 78) -9643 ENSMUSG00000105583.1 ENSMUSG00000105583 ENSMUST00000197269 Gm43777 antisense Interval_137366 chr6 71732250 71732608 + 0 NA intron (ENSMUSG00000052852.8, intron 1 of 8) protein_coding-intron (ENSMUSG00000052852.8, intron 1 of 6) 24559 ENSMUSG00000052852.8 ENSMUSG00000052852 ENSMUST00000212631 Reep1 protein_coding Interval_111582 chr4 23935434 23935741 + 0 NA Intergenic Intergenic -1633 ENSMUSG00000100395.1 ENSMUSG00000100395 ENSMUST00000188547 Gm28448 lincRNA Interval_67026 chr16 41060261 41061142 + 0 NA intron (ENSMUSG00000061080.11, intron 2 of 8) protein_coding-intron (ENSMUSG00000061080.11, intron 2 of 8) 5875 ENSMUSG00000099168.1 ENSMUSG00000099168 ENSMUST00000183933 Gm27717 misc_RNA Interval_129718 chr5 121943280 121944026 + 0 NA intron (ENSMUSG00000042589.18, intron 1 of 6) protein_coding-intron (ENSMUSG00000042589.18, intron 2 of 22) -77590 ENSMUSG00000042589.18 ENSMUSG00000042589 ENSMUST00000125267 Cux2 protein_coding Interval_107411 chr3 107378870 107379735 + 0 NA Intergenic Intergenic 36347 ENSMUSG00000105532.1 ENSMUSG00000105532 ENSMUST00000199575 Gm5279 processed_pseudogene Interval_90277 chr2 29493173 29493796 + 0 NA intron (ENSMUSG00000026799.15, intron 4 of 4) protein_coding-intron (ENSMUSG00000026799.15, intron 4 of 7) -3027 ENSMUSG00000026799.15 ENSMUSG00000026799 ENSMUST00000147547 Med27 protein_coding Interval_82143 chr18 68017042 68017236 + 0 NA intron (ENSMUSG00000024544.9, intron 1 of 5) protein_coding-intron (ENSMUSG00000024544.9, intron 1 of 5) 101235 ENSMUSG00000117891.1 ENSMUSG00000117891 ENSMUST00000236198 Gm41764 antisense Interval_33179 chr11 115010535 115010811 + 0 NA intron (ENSMUSG00000089753.9, intron 3 of 3) protein_coding-intron (ENSMUSG00000089753.9, intron 3 of 3) 5520 ENSMUSG00000089753.9 ENSMUSG00000089753 ENSMUST00000092463 Cd300ld2 protein_coding Interval_37326 chr12 65130874 65131142 + 0 NA TTS (ENSMUSG00000055884.8) protein_coding-TTS (ENSMUSG00000055884.8) -31002 ENSMUSG00000112992.1 ENSMUSG00000112992 ENSMUST00000223249 Gm47869 processed_pseudogene Interval_72454 chr17 29895471 29896698 + 0 NA exon (ENSMUSG00000086534.2, exon 5 of 6) antisense-exon (ENSMUSG00000086534.2, exon 5 of 6) 6000 ENSMUSG00000086534.2 ENSMUSG00000086534 ENSMUST00000149552 Gm16758 antisense Interval_32192 chr11 106037355 106038247 + 0 NA intron (ENSMUSG00000049354.8, intron 1 of 3) protein_coding-intron (ENSMUSG00000049354.8, intron 1 of 6) 901 ENSMUSG00000049354.8 ENSMUSG00000049354 ENSMUST00000106891 Dcaf7 protein_coding Interval_25616 chr11 50219839 50220147 + 0 NA intron (ENSMUSG00000036620.14, intron 1 of 2) protein_coding-intron (ENSMUSG00000036620.14, intron 1 of 2) -10747 ENSMUSG00000036620.14 ENSMUSG00000036620 ENSMUST00000122977 Mgat4b protein_coding Interval_64065 chr16 7038746 7039053 + 0 NA intron (ENSMUSG00000008658.16, intron 4 of 11) protein_coding-intron (ENSMUSG00000008658.16, intron 3 of 14) -154848 ENSMUSG00000008658.16 ENSMUSG00000008658 ENSMUST00000231031 Rbfox1 protein_coding Interval_123432 chr5 32490345 32490746 + 0 NA intron (ENSMUSG00000014956.15, intron 2 of 3) protein_coding-intron (ENSMUSG00000014956.15, intron 7 of 7) -10660 ENSMUSG00000080753.1 ENSMUSG00000080753 ENSMUST00000118396 Gm15613 processed_pseudogene Interval_158966 chr8 88288882 88289367 + 0 NA promoter-TSS (ENSMUSG00000031659.13) protein_coding-promoter-TSS (ENSMUSG00000031659.13) -11255 ENSMUSG00000031659.13 ENSMUSG00000031659 ENSMUST00000210688 Adcy7 protein_coding Interval_135961 chr6 49110850 49111394 + 0 NA promoter-TSS (ENSMUSG00000029814.10) protein_coding-promoter-TSS (ENSMUSG00000029814.10) -16911 ENSMUSG00000029814.10 ENSMUSG00000029814 ENSMUST00000203680 Igf2bp3 protein_coding Interval_109295 chr3 138733057 138733640 + 0 NA Intergenic Intergenic -6364 ENSMUSG00000105838.1 ENSMUSG00000105838 ENSMUST00000197761 4930425O10Rik lincRNA Interval_12254 chr1 191149459 191150116 + 0 NA Intergenic Intergenic 15030 ENSMUSG00000091017.1 ENSMUSG00000091017 ENSMUST00000171798 Fam71a protein_coding Interval_120620 chr4 149725880 149726270 + 0 NA exon (ENSMUSG00000044700.15, exon 6 of 6) protein_coding-exon (ENSMUSG00000044700.15, exon 6 of 6) 11695 ENSMUSG00000044700.15 ENSMUSG00000044700 ENSMUST00000145405 Tmem201 protein_coding Interval_118141 chr4 129194344 129195619 + 0 NA intron (ENSMUSG00000028811.12, intron 1 of 2) protein_coding-intron (ENSMUSG00000028811.12, intron 1 of 12) -5404 ENSMUSG00000040928.15 ENSMUSG00000040928 ENSMUST00000142490 S100pbp protein_coding Interval_173140 chrX 73400729 73401936 + 0 NA TTS (ENSMUSG00000097110.1) antisense-TTS (ENSMUSG00000097110.1) -2596 ENSMUSG00000096966.2 ENSMUSG00000096966 ENSMUST00000180787 Gm18336 protein_coding Interval_92960 chr2 68978805 68979418 + 0 NA intron (ENSMUSG00000027035.10, intron 1 of 3) protein_coding-intron (ENSMUSG00000027035.10, intron 3 of 9) -10270 ENSMUSG00000104262.1 ENSMUSG00000104262 ENSMUST00000193717 Gm37747 TEC Interval_145238 chr7 30846748 30846955 + 0 NA Intergenic Intergenic 9316 ENSMUSG00000019429.7 ENSMUSG00000019429 ENSMUST00000185748 Ffar3 protein_coding Interval_13356 chr10 16877806 16878679 + 0 NA Intergenic Intergenic 81269 ENSMUSG00000112499.1 ENSMUSG00000112499 ENSMUST00000220087 Gm47736 processed_pseudogene Interval_13890 chr10 24317426 24317653 + 0 NA Intergenic Intergenic 93994 ENSMUSG00000020000.7 ENSMUSG00000020000 ENSMUST00000154916 Moxd1 protein_coding Interval_88561 chr2 6157084 6157519 + 0 NA Intergenic Intergenic -23345 ENSMUSG00000082332.2 ENSMUSG00000082332 ENSMUST00000117166 Gm13384 processed_pseudogene Interval_14277 chr10 30295944 30296209 + 0 NA Intergenic Intergenic -76842 ENSMUSG00000111047.1 ENSMUSG00000111047 ENSMUST00000213206 Gm4780 transcribed_processed_pseudogene Interval_94373 chr2 90571319 90571533 + 0 NA intron (ENSMUSG00000025314.16, intron 1 of 23) protein_coding-intron (ENSMUSG00000025314.16, intron 1 of 23) 9221 ENSMUSG00000025314.16 ENSMUSG00000025314 ENSMUST00000168621 Ptprj protein_coding Interval_3883 chr1 64305258 64305941 + 0 NA Intergenic Intergenic -2556 ENSMUSG00000101895.1 ENSMUSG00000101895 ENSMUST00000190863 Gm28981 lincRNA Interval_60216 chr15 68237307 68237600 + 0 NA intron (ENSMUSG00000022335.17, intron 1 of 13) protein_coding-intron (ENSMUSG00000022335.17, intron 1 of 4) 21334 ENSMUSG00000022335.17 ENSMUSG00000022335 ENSMUST00000161139 Zfat protein_coding Interval_38874 chr12 83534974 83536526 + 0 NA promoter-TSS (ENSMUSG00000021222.9) protein_coding-promoter-TSS (ENSMUSG00000021222.9) 9750 ENSMUSG00000021222.9 ENSMUSG00000021222 ENSMUST00000221944 Dcaf4 protein_coding Interval_65812 chr16 29198349 29199851 + 0 NA Intergenic Intergenic -11008 ENSMUSG00000022525.13 ENSMUSG00000022525 ENSMUST00000161294 Plaat1 protein_coding Interval_113994 chr4 62332044 62332787 + 0 NA promoter-TSS (ENSMUSG00000066151.12) protein_coding-promoter-TSS (ENSMUSG00000066151.12) 6080 ENSMUSG00000066151.12 ENSMUSG00000066151 ENSMUST00000131977 Fkbp15 protein_coding Interval_19458 chr10 99577245 99577544 + 0 NA Intergenic Intergenic -31777 ENSMUSG00000111962.1 ENSMUSG00000111962 ENSMUST00000218263 Gm20110 lincRNA Interval_128227 chr5 111873950 111874382 + 0 NA Intergenic Intergenic 70069 ENSMUSG00000106060.1 ENSMUSG00000106060 ENSMUST00000197648 Gm42488 lincRNA Interval_125350 chr5 66362611 66363000 + 0 NA exon (ENSMUSG00000029207.16, exon 11 of 18) protein_coding-exon (ENSMUSG00000029207.16, exon 11 of 18) 5887 ENSMUSG00000106910.1 ENSMUSG00000106910 ENSMUST00000202238 Gm16273 processed_pseudogene Interval_11900 chr1 186918529 186918783 + 0 NA Intergenic Intergenic -8306 ENSMUSG00000103503.1 ENSMUSG00000103503 ENSMUST00000194671 1700023G09Rik lincRNA Interval_163081 chr9 15068758 15070023 + 0 NA intron (ENSMUSG00000031936.9, intron 13 of 19) protein_coding-intron (ENSMUSG00000031936.9, intron 13 of 19) -25593 ENSMUSG00000031934.14 ENSMUSG00000031934 ENSMUST00000169288 Panx1 protein_coding Interval_40917 chr12 109880568 109882097 + 0 NA Intergenic Intergenic 13761 ENSMUSG00000113625.1 ENSMUSG00000113625 ENSMUST00000222259 Gm3379 processed_pseudogene Interval_38716 chr12 81511965 81512791 + 0 NA promoter-TSS (ENSMUSG00000090935.10) protein_coding-promoter-TSS (ENSMUSG00000090935.10) 11138 ENSMUSG00000088651.1 ENSMUSG00000088651 ENSMUST00000158026 Gm24853 snoRNA Interval_145615 chr7 36035863 36036461 + 0 NA Intergenic Intergenic -61216 ENSMUSG00000108711.1 ENSMUSG00000108711 ENSMUST00000205504 Gm38991 lincRNA Interval_77276 chr17 87714772 87716205 + 0 NA intron (ENSMUSG00000024151.13, intron 3 of 3) protein_coding-intron (ENSMUSG00000024151.13, intron 11 of 15) 18947 ENSMUSG00000024151.13 ENSMUSG00000024151 ENSMUST00000174703 Msh2 protein_coding Interval_125556 chr5 70842240 70843666 + 0 NA promoter-TSS (ENSMUSG00000001260.10) protein_coding-promoter-TSS (ENSMUSG00000001260.10) -639 ENSMUSG00000001260.10 ENSMUSG00000001260 ENSMUST00000200126 Gabrg1 protein_coding Interval_146576 chr7 46963062 46963688 + 0 NA Intergenic Intergenic -3873 ENSMUSG00000110416.1 ENSMUSG00000110416 ENSMUST00000209404 Gm19248 processed_pseudogene Interval_108046 chr3 121025768 121025961 + 0 NA Intergenic Intergenic 3918 ENSMUSG00000104749.1 ENSMUSG00000104749 ENSMUST00000200496 Gm42926 TEC Interval_54048 chr14 64764713 64765544 + 0 NA exon (ENSMUSG00000060012.9, exon 25 of 40) protein_coding-exon (ENSMUSG00000060012.9, exon 25 of 40) 11210 ENSMUSG00000064442.1 ENSMUSG00000064442 ENSMUST00000082508 Gm26225 snoRNA Interval_97495 chr2 137794896 137795359 + 0 NA intron (ENSMUSG00000085640.1, intron 4 of 4) lincRNA-intron (ENSMUSG00000085640.1, intron 4 of 4) 81704 ENSMUSG00000086214.1 ENSMUSG00000086214 ENSMUST00000134795 Gm14062 lincRNA Interval_134525 chr6 29330526 29330710 + 0 NA intron (ENSMUSG00000039742.15, intron 4 of 6) protein_coding-intron (ENSMUSG00000039742.15, intron 4 of 6) -7412 ENSMUSG00000090692.1 ENSMUSG00000090692 ENSMUST00000171782 Gm17172 antisense Interval_63622 chr15 102398739 102400383 + 0 NA Intergenic Intergenic -6582 ENSMUSG00000001280.13 ENSMUSG00000001280 ENSMUST00000168802 Sp1 protein_coding Interval_133200 chr5 150501776 150502875 + 0 NA promoter-TSS (ENSMUSG00000106738.1) lincRNA-promoter-TSS (ENSMUSG00000106738.1) -192 ENSMUSG00000106738.1 ENSMUSG00000106738 ENSMUST00000202066 Gm5 lincRNA Interval_134501 chr6 29169875 29171503 + 0 NA exon (ENSMUSG00000079654.3, exon 5 of 5) protein_coding-exon (ENSMUSG00000079654.3, exon 5 of 5) 8895 ENSMUSG00000079654.3 ENSMUSG00000079654 ENSMUST00000159200 Prrt4 protein_coding Interval_11186 chr1 179971586 179972026 + 0 NA intron (ENSMUSG00000026490.18, intron 1 of 37) protein_coding-intron (ENSMUSG00000026490.18, intron 1 of 34) 10696 ENSMUSG00000026490.18 ENSMUSG00000026490 ENSMUST00000129754 Cdc42bpa protein_coding Interval_75688 chr17 70675879 70677667 + 0 NA intron (ENSMUSG00000003279.17, intron 4 of 9) protein_coding-intron (ENSMUSG00000003279.17, intron 9 of 14) 78809 ENSMUSG00000097282.1 ENSMUSG00000097282 ENSMUST00000181546 5031415H12Rik antisense Interval_80335 chr18 39381187 39382183 + 0 NA intron (ENSMUSG00000085289.1, intron 2 of 3) antisense-intron (ENSMUSG00000085289.1, intron 2 of 3) 7740 ENSMUSG00000085289.1 ENSMUSG00000085289 ENSMUST00000135378 Gm15337 antisense Interval_165837 chr9 53676393 53677726 + 0 NA intron (ENSMUSG00000086914.1, intron 1 of 1) antisense-intron (ENSMUSG00000086914.1, intron 1 of 1) -9552 ENSMUSG00000032030.16 ENSMUSG00000032030 ENSMUST00000133872 Cul5 protein_coding Interval_171357 chr9 116965382 116965946 + 0 NA intron (ENSMUSG00000039607.17, intron 5 of 15) protein_coding-intron (ENSMUSG00000039607.17, intron 3 of 12) -93494 ENSMUSG00000092184.1 ENSMUSG00000092184 ENSMUST00000172565 Gm18489 processed_pseudogene Interval_162749 chr9 8433380 8434541 + 0 NA Intergenic Intergenic -42313 ENSMUSG00000110828.1 ENSMUSG00000110828 ENSMUST00000216605 Gm47517 processed_pseudogene Interval_111863 chr4 32074514 32075813 + 0 NA Intergenic Intergenic 23425 ENSMUSG00000082398.1 ENSMUSG00000082398 ENSMUST00000118472 Gm11927 processed_pseudogene Interval_77823 chr18 4127219 4128551 + 0 NA Intergenic Intergenic -37977 ENSMUSG00000024233.10 ENSMUSG00000024233 ENSMUST00000120837 Lyzl1 protein_coding Interval_151589 chr7 124493223 124493489 + 0 NA TTS (ENSMUSG00000087781.1) snoRNA-TTS (ENSMUSG00000087781.1) 450 ENSMUSG00000087781.1 ENSMUSG00000087781 ENSMUST00000157156 Gm23168 snoRNA Interval_39457 chr12 87581937 87584340 + 0 NA Intergenic Intergenic -19579 ENSMUSG00000096576.2 ENSMUSG00000096576 ENSMUST00000222332 Oog1 protein_coding Interval_27215 chr11 64169764 64170399 + 0 NA intron (ENSMUSG00000087622.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000087622.1, intron 1 of 2) 5508 ENSMUSG00000087622.1 ENSMUSG00000087622 ENSMUST00000145095 Gm12290 lincRNA Interval_151904 chr7 127448366 127449743 + 0 NA promoter-TSS (ENSMUSG00000048921.11) protein_coding-promoter-TSS (ENSMUSG00000048921.11) -61 ENSMUSG00000048921.11 ENSMUSG00000048921 ENSMUST00000106299 Zfp689 protein_coding Interval_21752 chr11 4122922 4124386 + 0 NA promoter-TSS (ENSMUSG00000003585.13) protein_coding-promoter-TSS (ENSMUSG00000003585.13) -239 ENSMUSG00000003585.13 ENSMUSG00000003585 ENSMUST00000136420 Sec14l2 protein_coding Interval_75037 chr17 61902786 61903682 + 0 NA Intergenic Intergenic 30859 ENSMUSG00000117160.1 ENSMUSG00000117160 ENSMUST00000232834 Gm49859 processed_pseudogene Interval_77032 chr17 85824027 85824415 + 0 NA promoter-TSS (ENSMUSG00000100345.1) lincRNA-promoter-TSS (ENSMUSG00000100345.1) -177 ENSMUSG00000100345.1 ENSMUSG00000100345 ENSMUST00000186162 Gm29418 lincRNA Interval_68457 chr16 77058726 77060731 + 0 NA intron (ENSMUSG00000022867.11, intron 7 of 25) protein_coding-intron (ENSMUSG00000022867.11, intron 7 of 23) 46022 ENSMUSG00000022867.11 ENSMUSG00000022867 ENSMUST00000232351 Usp25 protein_coding Interval_76936 chr17 85044888 85045644 + 0 NA intron (ENSMUSG00000024131.8, intron 4 of 9) protein_coding-intron (ENSMUSG00000024131.8, intron 4 of 9) 16890 ENSMUSG00000024131.8 ENSMUSG00000024131 ENSMUST00000024944 Slc3a1 protein_coding Interval_164798 chr9 41980710 41982489 + 0 NA intron (ENSMUSG00000049313.8, intron 2 of 4) protein_coding-intron (ENSMUSG00000049313.8, intron 41 of 47) 2971 ENSMUSG00000049313.8 ENSMUSG00000049313 ENSMUST00000139133 Sorl1 protein_coding Interval_8914 chr1 152089459 152091380 + 0 NA promoter-TSS (ENSMUSG00000032666.16) protein_coding-promoter-TSS (ENSMUSG00000032666.16) -449 ENSMUSG00000032666.16 ENSMUSG00000032666 ENSMUST00000121533 1700025G04Rik protein_coding Interval_20107 chr10 114852786 114853691 + 0 NA Intergenic Intergenic -21769 ENSMUSG00000111883.1 ENSMUSG00000111883 ENSMUST00000219061 Gm31182 lincRNA Interval_33860 chr11 119052692 119053581 + 0 NA Intergenic Intergenic -12225 ENSMUSG00000025578.9 ENSMUSG00000025578 ENSMUST00000143831 Cbx8 protein_coding Interval_20541 chr10 118721929 118722827 + 0 NA Intergenic Intergenic -2950 ENSMUSG00000112535.1 ENSMUSG00000112535 ENSMUST00000219645 Gm47425 lincRNA Interval_157899 chr8 75320680 75321003 + 0 NA Intergenic Intergenic 26271 ENSMUSG00000110432.1 ENSMUSG00000110432 ENSMUST00000213023 Gm45907 processed_pseudogene Interval_46296 chr13 63511513 63512013 + 0 NA exon (ENSMUSG00000021466.12, exon 23 of 23) protein_coding-exon (ENSMUSG00000021466.12, exon 23 of 23) 27915 ENSMUSG00000021466.12 ENSMUSG00000021466 ENSMUST00000220588 Ptch1 protein_coding Interval_11007 chr1 178144093 178144362 + 0 NA TTS (ENSMUSG00000102493.1) unprocessed_pseudogene-TTS (ENSMUSG00000102493.1) 926 ENSMUSG00000102493.1 ENSMUSG00000102493 ENSMUST00000194128 Gm8010 unprocessed_pseudogene Interval_75169 chr17 64267913 64268164 + 0 NA Intergenic Intergenic 53577 ENSMUSG00000080455.1 ENSMUSG00000080455 ENSMUST00000116805 Gm24194 miRNA Interval_103866 chr3 53868971 53869786 + 0 NA Intergenic Intergenic -5616 ENSMUSG00000027746.13 ENSMUSG00000027746 ENSMUST00000152414 Ufm1 protein_coding Interval_5774 chr1 91720267 91721256 + 0 NA Intergenic Intergenic -80709 ENSMUSG00000007805.4 ENSMUSG00000007805 ENSMUST00000186075 Twist2 protein_coding Interval_124214 chr5 41477882 41478114 + 0 NA Intergenic Intergenic -55954 ENSMUSG00000107135.1 ENSMUSG00000107135 ENSMUST00000201766 Gm43806 processed_pseudogene Interval_110919 chr4 10165340 10165796 + 0 NA Intergenic Intergenic 206214 ENSMUSG00000082501.1 ENSMUSG00000082501 ENSMUST00000120635 Gm11835 processed_pseudogene Interval_165072 chr9 44292627 44292889 + 0 NA promoter-TSS (ENSMUSG00000111291.1) lincRNA-promoter-TSS (ENSMUSG00000111291.1) -295 ENSMUSG00000111291.1 ENSMUSG00000111291 ENSMUST00000217413 Gm48604 lincRNA Interval_24889 chr11 40763155 40764011 + 0 NA Intergenic Intergenic -9645 ENSMUSG00000020326.7 ENSMUSG00000020326 ENSMUST00000151359 Ccng1 protein_coding Interval_100242 chr2 167891918 167892498 + 0 NA Intergenic Intergenic 33623 ENSMUSG00000085411.1 ENSMUSG00000085411 ENSMUST00000142937 Gm14319 lincRNA Interval_76202 chr17 77035905 77036146 + 0 NA Intergenic Intergenic 99385 ENSMUSG00000117388.1 ENSMUSG00000117388 ENSMUST00000235006 Gm6496 processed_pseudogene Interval_56543 chr14 120242414 120243147 + 0 NA Intergenic Intergenic -101151 ENSMUSG00000115146.1 ENSMUSG00000115146 ENSMUST00000226598 Gm4681 lincRNA Interval_51999 chr14 34523133 34523616 + 0 NA promoter-TSS (ENSMUSG00000021797.2) protein_coding-promoter-TSS (ENSMUSG00000021797.2) -573 ENSMUSG00000021797.2 ENSMUSG00000021797 ENSMUST00000022325 9230112D13Rik protein_coding Interval_83829 chr19 4945307 4946114 + 0 NA Intergenic Intergenic -2612 ENSMUSG00000024901.15 ENSMUSG00000024901 ENSMUST00000143930 Peli3 protein_coding Interval_158265 chr8 80710472 80711483 + 0 NA promoter-TSS (ENSMUSG00000031715.14) protein_coding-promoter-TSS (ENSMUSG00000031715.14) -116 ENSMUSG00000031715.14 ENSMUSG00000031715 ENSMUST00000148455 Smarca5 protein_coding Interval_2422 chr1 39196628 39197243 + 0 NA intron (ENSMUSG00000026077.15, intron 1 of 20) protein_coding-intron (ENSMUSG00000026077.15, intron 1 of 20) 3204 ENSMUSG00000026077.15 ENSMUSG00000026077 ENSMUST00000172825 Npas2 protein_coding Interval_89729 chr2 25035736 25037593 + 0 NA intron (ENSMUSG00000036833.16, intron 21 of 21) protein_coding-intron (ENSMUSG00000036833.16, intron 21 of 34) -5211 ENSMUSG00000089513.1 ENSMUSG00000089513 ENSMUST00000158888 Gm24875 snRNA Interval_35365 chr12 21061957 21063602 + 0 NA intron (ENSMUSG00000052632.16, intron 3 of 9) protein_coding-intron (ENSMUSG00000052632.16, intron 3 of 9) 19820 ENSMUSG00000092229.3 ENSMUSG00000092229 ENSMUST00000174304 Gm5977 transcribed_unprocessed_pseudogene Interval_65037 chr16 18626097 18627030 + 0 NA promoter-TSS (ENSMUSG00000116594.1) protein_coding-promoter-TSS (ENSMUSG00000116594.1) -92 ENSMUSG00000072214.7 ENSMUSG00000072214 ENSMUST00000231622 Septin5 protein_coding Interval_146746 chr7 49877454 49877778 + 0 NA Intergenic Intergenic -32683 ENSMUSG00000039728.15 ENSMUSG00000039728 ENSMUST00000107605 Slc6a5 protein_coding Interval_146413 chr7 45757881 45758786 + 0 NA TTS (ENSMUSG00000003271.17) protein_coding-TTS (ENSMUSG00000003271.17) 16284 ENSMUSG00000109602.1 ENSMUSG00000109602 ENSMUST00000211176 Gm31597 antisense Interval_15262 chr10 43908592 43909047 + 0 NA intron (ENSMUSG00000019864.14, intron 2 of 8) protein_coding-intron (ENSMUSG00000019864.14, intron 2 of 8) -13278 ENSMUSG00000019863.7 ENSMUSG00000019863 ENSMUST00000217541 Qrsl1 protein_coding Interval_167282 chr9 67024917 67025310 + 0 NA intron (ENSMUSG00000032366.15, intron 8 of 8) protein_coding-intron (ENSMUSG00000032366.15, intron 9 of 9) 7712 ENSMUSG00000032366.15 ENSMUSG00000032366 ENSMUST00000131279 Tpm1 protein_coding Interval_8995 chr1 152989468 152989755 + 0 NA intron (ENSMUSG00000042751.14, intron 2 of 8) protein_coding-intron (ENSMUSG00000042751.14, intron 1 of 10) -39514 ENSMUSG00000100702.1 ENSMUSG00000100702 ENSMUST00000187136 Gm8976 processed_pseudogene Interval_17804 chr10 80179031 80180116 + 0 NA promoter-TSS (ENSMUSG00000003070.6) protein_coding-promoter-TSS (ENSMUSG00000003070.6) 91 ENSMUSG00000003070.6 ENSMUSG00000003070 ENSMUST00000003154 Efna2 protein_coding Interval_148200 chr7 79780483 79781616 + 0 NA intron (ENSMUSG00000039099.7, intron 17 of 17) protein_coding-intron (ENSMUSG00000039099.7, intron 17 of 17) 9576 ENSMUSG00000108506.1 ENSMUSG00000108506 ENSMUST00000206719 Gm44705 processed_pseudogene Interval_158201 chr8 79733934 79734743 + 0 NA intron (ENSMUSG00000036977.8, intron 4 of 4) protein_coding-intron (ENSMUSG00000036977.8, intron 4 of 4) 18075 ENSMUSG00000110202.1 ENSMUSG00000110202 ENSMUST00000211147 Gm45435 antisense Interval_17499 chr10 77258660 77259736 + 0 NA promoter-TSS (ENSMUSG00000020260.9) protein_coding-promoter-TSS (ENSMUSG00000020260.9) 25 ENSMUSG00000078444.3 ENSMUSG00000078444 ENSMUST00000105408 Gm10941 bidirectional_promoter_lncRNA Interval_74190 chr17 46997865 46998264 + 0 NA intron (ENSMUSG00000023977.15, intron 2 of 28) protein_coding-intron (ENSMUSG00000023977.15, intron 2 of 46) -5148 ENSMUSG00000084572.1 ENSMUSG00000084572 ENSMUST00000122623 Gm23657 misc_RNA Interval_16921 chr10 69908234 69909138 + 0 NA intron (ENSMUSG00000069601.14, intron 24 of 42) protein_coding-intron (ENSMUSG00000069601.14, intron 1 of 16) -266325 ENSMUSG00000048701.13 ENSMUSG00000048701 ENSMUST00000135607 Ccdc6 protein_coding Interval_112522 chr4 41803513 41803990 + 0 NA Intergenic Intergenic -5332 ENSMUSG00000082962.3 ENSMUSG00000082962 ENSMUST00000120436 Gm10601 unprocessed_pseudogene Interval_89008 chr2 14358394 14358644 + 0 NA Intergenic Intergenic 12842 ENSMUSG00000103475.1 ENSMUSG00000103475 ENSMUST00000195680 Gm37697 TEC Interval_4874 chr1 80757191 80759099 + 0 NA intron (ENSMUSG00000038608.15, intron 1 of 13) protein_coding-intron (ENSMUSG00000038608.15, intron 1 of 55) 382 ENSMUSG00000038608.15 ENSMUSG00000038608 ENSMUST00000187698 Dock10 protein_coding Interval_155742 chr8 36613251 36614445 + 0 NA promoter-TSS (ENSMUSG00000031523.16) protein_coding-promoter-TSS (ENSMUSG00000031523.16) 124657 ENSMUSG00000039620.17 ENSMUSG00000039620 ENSMUST00000125492 Trmt9b protein_coding Interval_155229 chr8 28317111 28317320 + 0 NA Intergenic Intergenic 131375 ENSMUSG00000098056.1 ENSMUSG00000098056 ENSMUST00000182906 Gm8100 processed_pseudogene Interval_102681 chr3 29812630 29813091 + 0 NA intron (ENSMUSG00000102574.1, intron 3 of 3) lincRNA-intron (ENSMUSG00000102574.1, intron 3 of 3) 41576 ENSMUSG00000103095.1 ENSMUSG00000103095 ENSMUST00000191640 Gm37557 processed_pseudogene Interval_80331 chr18 39341045 39341771 + 0 NA TTS (ENSMUSG00000082287.1) processed_pseudogene-TTS (ENSMUSG00000082287.1) 556 ENSMUSG00000082287.1 ENSMUSG00000082287 ENSMUST00000118825 Gm15333 processed_pseudogene Interval_90780 chr2 32575076 32576363 + 0 NA promoter-TSS (ENSMUSG00000046854.16) protein_coding-promoter-TSS (ENSMUSG00000046854.16) -35 ENSMUSG00000075405.3 ENSMUSG00000075405 ENSMUST00000100190 9430097D07Rik antisense Interval_21339 chr10 128061063 128061293 + 0 NA intron (ENSMUSG00000071072.12, intron 1 of 6) protein_coding-intron (ENSMUSG00000071072.12, intron 1 of 7) -8094 ENSMUSG00000071072.12 ENSMUSG00000071072 ENSMUST00000148943 Ptges3 protein_coding Interval_54979 chr14 76632606 76633519 + 0 NA Intergenic Intergenic 3802 ENSMUSG00000115143.1 ENSMUSG00000115143 ENSMUST00000227724 Fkbp1a-ps1 processed_pseudogene Interval_69288 chr16 91935211 91936997 + 0 NA intron (ENSMUSG00000087190.2, intron 1 of 5) antisense-intron (ENSMUSG00000087190.2, intron 1 of 5) -4558 ENSMUSG00000022956.11 ENSMUSG00000022956 ENSMUST00000132049 Atp5o protein_coding Interval_126050 chr5 77114887 77115567 + 0 NA promoter-TSS (ENSMUSG00000059325.14) protein_coding-promoter-TSS (ENSMUSG00000059325.14) 7121 ENSMUSG00000085858.1 ENSMUSG00000085858 ENSMUST00000156195 Gm15831 lincRNA Interval_22455 chr11 10386308 10386497 + 0 NA Intergenic Intergenic -9320 ENSMUSG00000084045.1 ENSMUSG00000084045 ENSMUST00000118697 Gm11997 processed_pseudogene Interval_136712 chr6 58333207 58333518 + 0 NA Intergenic Intergenic 31813 ENSMUSG00000091734.2 ENSMUSG00000091734 ENSMUST00000168416 Vmn1r29 protein_coding Interval_145103 chr7 30033789 30034933 + 0 NA Intergenic Intergenic 17019 ENSMUSG00000053985.10 ENSMUSG00000053985 ENSMUST00000077787 Zfp14 protein_coding Interval_142116 chr6 137289767 137290120 + 0 NA intron (ENSMUSG00000030223.14, intron 1 of 2) protein_coding-intron (ENSMUSG00000030223.14, intron 1 of 26) -120816 ENSMUSG00000030223.14 ENSMUSG00000030223 ENSMUST00000203127 Ptpro protein_coding Interval_20629 chr10 119757158 119757889 + 0 NA intron (ENSMUSG00000084764.1, intron 2 of 2) protein_coding-intron (ENSMUSG00000034813.18, intron 1 of 22) 4176 ENSMUSG00000084764.1 ENSMUSG00000084764 ENSMUST00000153898 Grip1os2 antisense Interval_167040 chr9 64765899 64766334 + 0 NA Intergenic Intergenic -39386 ENSMUSG00000104953.1 ENSMUSG00000104953 ENSMUST00000197528 Gm47308 miRNA Interval_143664 chr7 14097174 14097536 + 0 NA intron (ENSMUSG00000074375.3, intron 3 of 5) protein_coding-intron (ENSMUSG00000074375.3, intron 3 of 5) 25689 ENSMUSG00000074375.3 ENSMUSG00000074375 ENSMUST00000098809 Sult2a3 protein_coding Interval_91692 chr2 48001468 48002346 + 0 NA Intergenic Intergenic -138239 ENSMUSG00000082278.1 ENSMUSG00000082278 ENSMUST00000122057 Gm13471 processed_pseudogene Interval_45960 chr13 59661604 59662574 + 0 NA intron (ENSMUSG00000021556.12, intron 3 of 5) protein_coding-intron (ENSMUSG00000021556.12, intron 3 of 9) 13683 ENSMUSG00000021556.12 ENSMUSG00000021556 ENSMUST00000224160 Golm1 protein_coding Interval_57548 chr15 12257692 12259037 + 0 NA intron (ENSMUSG00000039458.15, intron 9 of 15) protein_coding-intron (ENSMUSG00000039458.15, intron 9 of 15) -28305 ENSMUSG00000115594.1 ENSMUSG00000115594 ENSMUST00000227442 Gm46497 processed_pseudogene Interval_70 GL456212.1 139034 139353 + 0 NA NA NA NA NA Interval_46031 chr13 60434058 60434973 + 0 NA intron (ENSMUSG00000114274.1, intron 1 of 3) lincRNA-intron (ENSMUSG00000114274.1, intron 1 of 3) 216 ENSMUSG00000114274.1 ENSMUSG00000114274 ENSMUST00000225281 Gm35333 lincRNA Interval_161291 chr8 119557980 119559302 + 0 NA promoter-TSS (ENSMUSG00000031835.16) protein_coding-promoter-TSS (ENSMUSG00000031835.16) -200 ENSMUSG00000031835.16 ENSMUSG00000031835 ENSMUST00000212813 Mbtps1 protein_coding Interval_61576 chr15 82569339 82570373 + 0 NA Intergenic Intergenic -4545 ENSMUSG00000116319.1 ENSMUSG00000116319 ENSMUST00000229062 Gm49429 TEC Interval_117399 chr4 123464694 123465326 + 0 NA intron (ENSMUSG00000028649.21, intron 39 of 97) protein_coding-intron (ENSMUSG00000028649.21, intron 35 of 92) -25221 ENSMUSG00000089588.1 ENSMUSG00000089588 ENSMUST00000158963 Gm23548 misc_RNA Interval_51875 chr14 33250203 33251086 + 0 NA exon (ENSMUSG00000063506.14, exon 1 of 4) protein_coding-exon (ENSMUSG00000063506.14, exon 1 of 4) -29713 ENSMUSG00000115597.1 ENSMUSG00000115597 ENSMUST00000226933 Gm49030 antisense Interval_33338 chr11 116004645 116007067 + 0 NA intron (ENSMUSG00000020758.15, intron 34 of 39) protein_coding-intron (ENSMUSG00000020758.15, intron 34 of 40) 6863 ENSMUSG00000020766.4 ENSMUSG00000020766 ENSMUST00000021114 Galk1 protein_coding Interval_139981 chr6 113176579 113176829 + 0 NA intron (ENSMUSG00000042873.11, intron 1 of 1) protein_coding-intron (ENSMUSG00000042873.11, intron 2 of 3) 17239 ENSMUSG00000042873.11 ENSMUSG00000042873 ENSMUST00000203665 Lhfpl4 protein_coding Interval_2791 chr1 45256238 45256736 + 0 NA Intergenic Intergenic -55186 ENSMUSG00000105211.1 ENSMUSG00000105211 ENSMUST00000198698 Gm47302 miRNA Interval_7153 chr1 127257523 127258340 + 0 NA intron (ENSMUSG00000036155.13, intron 2 of 10) protein_coding-intron (ENSMUSG00000036155.13, intron 2 of 17) -12593 ENSMUSG00000104378.1 ENSMUSG00000104378 ENSMUST00000194151 Gm37510 TEC Interval_149157 chr7 95489582 95490023 + 0 NA Intergenic Intergenic 14856 ENSMUSG00000108429.1 ENSMUSG00000108429 ENSMUST00000206820 Gm44603 processed_pseudogene Interval_144280 chr7 24253939 24255805 + 0 NA promoter-TSS (ENSMUSG00000030486.9) protein_coding-promoter-TSS (ENSMUSG00000030486.9) 78 ENSMUSG00000030486.9 ENSMUSG00000030486 ENSMUST00000072713 Zfp108 protein_coding Interval_152022 chr7 128321099 128321583 + 0 NA intron (ENSMUSG00000108608.1, intron 1 of 1) transcribed_processed_pseudogene-intron (ENSMUSG00000108608.1, intron 1 of 1) -8467 ENSMUSG00000108636.1 ENSMUSG00000108636 ENSMUST00000206929 Gm44650 unprocessed_pseudogene Interval_101205 chr2 179476550 179476812 + 0 NA intron (ENSMUSG00000000305.12, intron 2 of 2) protein_coding-intron (ENSMUSG00000000305.12, intron 2 of 15) 61745 ENSMUSG00000039138.1 ENSMUSG00000039138 ENSMUST00000041998 4930591A17Rik lincRNA Interval_134440 chr6 28729188 28730056 + 0 NA intron (ENSMUSG00000001424.14, intron 14 of 16) protein_coding-intron (ENSMUSG00000001424.14, intron 14 of 23) -66841 ENSMUSG00000103899.1 ENSMUSG00000103899 ENSMUST00000194243 Gm37940 TEC Interval_88509 chr2 5724258 5725815 + 0 NA Intergenic Intergenic -10533 ENSMUSG00000039145.16 ENSMUSG00000039145 ENSMUST00000155927 Camk1d protein_coding Interval_149305 chr7 97313320 97314398 + 0 NA intron (ENSMUSG00000035713.15, intron 3 of 7) protein_coding-intron (ENSMUSG00000035713.15, intron 7 of 10) 2135 ENSMUSG00000035713.15 ENSMUSG00000035713 ENSMUST00000181354 Usp35 protein_coding Interval_165360 chr9 46602805 46603063 + 0 NA Intergenic Intergenic -4321 ENSMUSG00000111649.1 ENSMUSG00000111649 ENSMUST00000217349 Gm48945 lincRNA Interval_171801 chr9 121285573 121286650 + 0 NA TTS (ENSMUSG00000110863.1) bidirectional_promoter_lncRNA-TTS (ENSMUSG00000110863.1) 8335 ENSMUSG00000110863.1 ENSMUSG00000110863 ENSMUST00000215259 Gm34655 bidirectional_promoter_lncRNA Interval_154936 chr8 25173178 25173944 + 0 NA intron (ENSMUSG00000065954.11, intron 6 of 8) protein_coding-intron (ENSMUSG00000065954.11, intron 5 of 12) -14328 ENSMUSG00000099142.1 ENSMUSG00000099142 ENSMUST00000184998 Mir8108 miRNA Interval_21735 chr11 4022762 4023478 + 0 NA Intergenic Intergenic -8345 ENSMUSG00000019368.13 ENSMUSG00000019368 ENSMUST00000134482 Sec14l4 protein_coding Interval_10513 chr1 171416804 171417422 + 0 NA promoter-TSS (ENSMUSG00000026641.13) protein_coding-promoter-TSS (ENSMUSG00000026641.13) -2606 ENSMUSG00000103711.1 ENSMUSG00000103711 ENSMUST00000194029 Tstd1 protein_coding Interval_89685 chr2 24568320 24569065 + 0 NA Intergenic Intergenic -1995 ENSMUSG00000085330.1 ENSMUSG00000085330 ENSMUST00000155475 Gm13417 lincRNA Interval_126898 chr5 96857561 96858262 + 0 NA Intergenic Intergenic 8406 ENSMUSG00000104955.1 ENSMUSG00000104955 ENSMUST00000198159 1700016F12Rik lincRNA Interval_103715 chr3 51952352 51953456 + 0 NA intron (ENSMUSG00000061143.15, intron 1 of 4) protein_coding-intron (ENSMUSG00000061143.15, intron 1 of 4) -28037 ENSMUSG00000104161.1 ENSMUSG00000104161 ENSMUST00000192391 Gm20089 antisense Interval_65997 chr16 30789922 30790883 + 0 NA intron (ENSMUSG00000116570.1, intron 2 of 2) lincRNA-intron (ENSMUSG00000116570.1, intron 2 of 2) 2853 ENSMUSG00000116570.1 ENSMUSG00000116570 ENSMUST00000231445 Gm49754 lincRNA Interval_153916 chr8 11001064 11001589 + 0 NA intron (ENSMUSG00000038894.7, intron 1 of 1) protein_coding-intron (ENSMUSG00000038894.7, intron 1 of 1) 7132 ENSMUSG00000038894.7 ENSMUSG00000038894 ENSMUST00000040514 Irs2 protein_coding Interval_101765 chr3 9466254 9466974 + 0 NA intron (ENSMUSG00000040209.12, intron 3 of 9) protein_coding-intron (ENSMUSG00000040209.12, intron 4 of 8) -29554 ENSMUSG00000103485.1 ENSMUSG00000103485 ENSMUST00000192900 Gm38001 TEC Interval_57180 chr15 7178911 7179284 + 0 NA intron (ENSMUSG00000054263.12, intron 13 of 15) protein_coding-intron (ENSMUSG00000054263.12, intron 13 of 19) 75671 ENSMUSG00000042961.13 ENSMUSG00000042961 ENSMUST00000159726 Egflam protein_coding Interval_170157 chr9 105664045 105666025 + 0 NA intron (ENSMUSG00000032571.14, intron 9 of 19) protein_coding-intron (ENSMUSG00000032571.14, intron 9 of 19) 8516 ENSMUSG00000084659.1 ENSMUSG00000084659 ENSMUST00000122710 Gm22720 snRNA Interval_129841 chr5 122690705 122691023 + 0 NA intron (ENSMUSG00000029468.17, intron 12 of 12) protein_coding-intron (ENSMUSG00000029468.17, intron 12 of 12) 6736 ENSMUSG00000059352.5 ENSMUSG00000059352 ENSMUST00000071235 Gm10064 processed_pseudogene Interval_105604 chr3 88038155 88038539 + 0 NA Intergenic Intergenic -4762 ENSMUSG00000028069.16 ENSMUSG00000028069 ENSMUST00000193398 Gpatch4 protein_coding Interval_142019 chr6 136570517 136570840 + 0 NA intron (ENSMUSG00000030213.12, intron 4 of 4) protein_coding-intron (ENSMUSG00000030213.12, intron 5 of 14) -49954 ENSMUSG00000107760.1 ENSMUSG00000107760 ENSMUST00000204462 Gm44401 TEC Interval_12736 chr10 4596056 4596727 + 0 NA Intergenic Intergenic -15202 ENSMUSG00000019768.16 ENSMUSG00000019768 ENSMUST00000137012 Esr1 protein_coding Interval_146530 chr7 46667189 46667777 + 0 NA promoter-TSS (ENSMUSG00000040046.14) protein_coding-promoter-TSS (ENSMUSG00000040046.14) -2195 ENSMUSG00000040046.14 ENSMUSG00000040046 ENSMUST00000168335 Tph1 protein_coding Interval_90704 chr2 32016983 32017587 + 0 NA promoter-TSS (ENSMUSG00000086192.1) antisense-promoter-TSS (ENSMUSG00000086192.1) 59 ENSMUSG00000086192.1 ENSMUSG00000086192 ENSMUST00000141023 Gm13609 antisense Interval_67347 chr16 46956081 46956453 + 0 NA Intergenic Intergenic -117931 ENSMUSG00000081624.1 ENSMUSG00000081624 ENSMUST00000117218 Gm6912 processed_pseudogene Interval_156441 chr8 48222292 48222914 + 0 NA Intergenic Intergenic 48382 ENSMUSG00000110480.1 ENSMUSG00000110480 ENSMUST00000212653 Gm32842 processed_pseudogene Interval_158659 chr8 85002747 85003135 + 0 NA exon (ENSMUSG00000052566.8, exon 22 of 22) protein_coding-exon (ENSMUSG00000052566.8, exon 22 of 22) 11590 ENSMUSG00000052819.6 ENSMUSG00000052819 ENSMUST00000209421 Best2 protein_coding Interval_57809 chr15 21148149 21148526 + 0 NA intron (ENSMUSG00000040452.9, intron 2 of 12) protein_coding-intron (ENSMUSG00000040452.9, intron 1 of 11) -31820 ENSMUSG00000103296.1 ENSMUSG00000103296 ENSMUST00000195204 Gm38234 TEC Interval_2872 chr1 47014500 47014822 + 0 NA Intergenic Intergenic -53127 ENSMUSG00000101921.1 ENSMUSG00000101921 ENSMUST00000186233 Gm28825 processed_pseudogene Interval_149109 chr7 93489802 93490012 + 0 NA Intergenic Intergenic -33153 ENSMUSG00000109195.1 ENSMUSG00000109195 ENSMUST00000207537 Gm45038 processed_pseudogene Interval_173202 chrX 74077127 74077482 + 0 NA intron (ENSMUSG00000031393.16, intron 1 of 3) protein_coding-intron (ENSMUSG00000031393.16, intron 1 of 2) 8293 ENSMUSG00000031393.16 ENSMUSG00000031393 ENSMUST00000198358 Mecp2 protein_coding Interval_99004 chr2 156583779 156584736 + 0 NA Intergenic Intergenic 12465 ENSMUSG00000055494.5 ENSMUSG00000055494 ENSMUST00000144818 Gm14168 lincRNA Interval_100429 chr2 168960919 168963044 + 0 NA Intergenic Intergenic -6715 ENSMUSG00000027551.15 ENSMUSG00000027551 ENSMUST00000136242 Zfp64 protein_coding Interval_10092 chr1 165743036 165744020 + 0 NA Intergenic Intergenic -7867 ENSMUSG00000103242.1 ENSMUSG00000103242 ENSMUST00000191813 Gm34767 processed_pseudogene Interval_3287 chr1 55706496 55706758 + 0 NA intron (ENSMUSG00000038349.10, intron 1 of 3) protein_coding-intron (ENSMUSG00000038349.10, intron 3 of 5) 4602 ENSMUSG00000038349.10 ENSMUSG00000038349 ENSMUST00000187059 Plcl1 protein_coding Interval_59621 chr15 56519947 56521068 + 0 NA Intergenic Intergenic 105494 ENSMUSG00000115064.1 ENSMUSG00000115064 ENSMUST00000228801 Gm49213 processed_pseudogene Interval_47497 chr13 85555958 85556333 + 0 NA Intergenic Intergenic 17433 ENSMUSG00000114506.1 ENSMUSG00000114506 ENSMUST00000224841 Gm5666 processed_pseudogene Interval_74763 chr17 56389538 56390270 + 0 NA intron (ENSMUSG00000024201.12, intron 11 of 21) protein_coding-intron (ENSMUSG00000024201.12, intron 11 of 22) -3613 ENSMUSG00000024201.12 ENSMUSG00000024201 ENSMUST00000141507 Kdm4b protein_coding Interval_71024 chr17 17256385 17256779 + 0 NA intron (ENSMUSG00000116802.1, intron 1 of 3) lincRNA-intron (ENSMUSG00000116802.1, intron 1 of 3) -5768 ENSMUSG00000116802.1 ENSMUSG00000116802 ENSMUST00000231376 Gm5165 lincRNA Interval_156725 chr8 57616629 57617690 + 0 NA intron (ENSMUSG00000031608.13, intron 1 of 5) protein_coding-intron (ENSMUSG00000031608.13, intron 1 of 11) -10003 ENSMUSG00000110405.1 ENSMUSG00000110405 ENSMUST00000211449 Gm45534 TEC Interval_101769 chr3 9479530 9480137 + 0 NA intron (ENSMUSG00000040209.12, intron 1 of 9) protein_coding-intron (ENSMUSG00000040209.12, intron 2 of 8) -16335 ENSMUSG00000103485.1 ENSMUSG00000103485 ENSMUST00000192900 Gm38001 TEC Interval_90762 chr2 32375209 32375445 + 0 NA promoter-TSS (ENSMUSG00000039205.16) protein_coding-promoter-TSS (ENSMUSG00000039205.16) 6535 ENSMUSG00000039195.4 ENSMUSG00000039195 ENSMUST00000048792 1110008P14Rik protein_coding Interval_44847 chr13 49050756 49052889 + 0 NA intron (ENSMUSG00000037989.15, intron 22 of 25) protein_coding-intron (ENSMUSG00000037989.15, intron 24 of 27) -83805 ENSMUSG00000038014.7 ENSMUSG00000038014 ENSMUST00000060805 Fam120a protein_coding Interval_21747 chr11 4094168 4095389 + 0 NA intron (ENSMUSG00000004748.5, intron 1 of 3) protein_coding-intron (ENSMUSG00000004748.5, intron 1 of 3) 362 ENSMUSG00000004748.5 ENSMUSG00000004748 ENSMUST00000123607 Mtfp1 protein_coding Interval_12894 chr10 7830395 7830882 + 0 NA Intergenic Intergenic -1832 ENSMUSG00000039981.6 ENSMUSG00000039981 ENSMUST00000039484 Zc3h12d protein_coding Interval_42944 chr13 21721254 21723327 + 0 NA promoter-TSS (ENSMUSG00000080076.4) unprocessed_pseudogene-promoter-TSS (ENSMUSG00000080076.4) 246 ENSMUSG00000114279.1 ENSMUSG00000114279 ENSMUST00000224651 H2bc14 protein_coding Interval_32618 chr11 109205948 109206145 + 0 NA Intergenic Intergenic 40919 ENSMUSG00000020599.13 ENSMUSG00000020599 ENSMUST00000106704 Rgs9 protein_coding Interval_48890 chr13 104445394 104445656 + 0 NA exon (ENSMUSG00000046169.10, exon 20 of 21) protein_coding-exon (ENSMUSG00000046169.10, exon 20 of 21) 157690 ENSMUSG00000046169.10 ENSMUSG00000046169 ENSMUST00000224504 Adamts6 protein_coding Interval_41068 chr12 110945715 110946108 + 0 NA intron (ENSMUSG00000021275.16, intron 14 of 19) protein_coding-intron (ENSMUSG00000021275.16, intron 14 of 19) 32344 ENSMUSG00000037904.14 ENSMUSG00000037904 ENSMUST00000144882 Ankrd9 protein_coding Interval_116499 chr4 114780086 114781591 + 0 NA Intergenic Intergenic -40884 ENSMUSG00000055198.3 ENSMUSG00000055198 ENSMUST00000137570 Gm12830 protein_coding Interval_126075 chr5 77239363 77239836 + 0 NA Intergenic Intergenic 12221 ENSMUSG00000107034.1 ENSMUSG00000107034 ENSMUST00000201959 Gm19060 processed_pseudogene Interval_41608 chr12 116907241 116907572 + 0 NA intron (ENSMUSG00000056553.14, intron 11 of 22) protein_coding-intron (ENSMUSG00000056553.14, intron 11 of 22) -54304 ENSMUSG00000113795.1 ENSMUSG00000113795 ENSMUST00000220994 Gm48119 processed_pseudogene Interval_89150 chr2 17436897 17437100 + 0 NA intron (ENSMUSG00000053702.16, intron 8 of 9) protein_coding-intron (ENSMUSG00000053702.16, intron 4 of 6) -45990 ENSMUSG00000053702.16 ENSMUSG00000053702 ENSMUST00000130725 Nebl protein_coding Interval_86996 chr19 45438885 45439359 + 0 NA exon (ENSMUSG00000025217.15, exon 4 of 4) protein_coding-exon (ENSMUSG00000025217.15, exon 4 of 4) 12073 ENSMUSG00000057605.4 ENSMUSG00000057605 ENSMUST00000077435 Gm6807 processed_pseudogene Interval_98242 chr2 150328167 150329039 + 0 NA intron (ENSMUSG00000095315.2, intron 2 of 3) protein_coding-intron (ENSMUSG00000063364.10, intron 3 of 3) 17172 ENSMUSG00000095315.2 ENSMUSG00000095315 ENSMUST00000133235 Gm10130 protein_coding Interval_21920 chr11 5201722 5202317 + 0 NA exon (ENSMUSG00000020393.16, exon 6 of 9) protein_coding-exon (ENSMUSG00000020393.16, exon 6 of 9) 36429 ENSMUSG00000020393.16 ENSMUSG00000020393 ENSMUST00000151978 Kremen1 protein_coding Interval_157530 chr8 71236231 71236467 + 0 NA Intergenic Intergenic 12400 ENSMUSG00000110664.1 ENSMUSG00000110664 ENSMUST00000212311 Aprt-ps processed_pseudogene Interval_165591 chr9 49989962 49990159 + 0 NA Intergenic Intergenic 35182 ENSMUSG00000111682.1 ENSMUSG00000111682 ENSMUST00000215094 Gm47543 lincRNA Interval_125116 chr5 64625979 64626884 + 0 NA Intergenic Intergenic -9409 ENSMUSG00000104928.1 ENSMUSG00000104928 ENSMUST00000197839 Gm42565 lincRNA Interval_77455 chr17 88960512 88960851 + 0 NA Intergenic Intergenic -104059 ENSMUSG00000117566.1 ENSMUSG00000117566 ENSMUST00000234561 Gm9407 processed_pseudogene Interval_284 KZ289085.1 81264 81682 + 0 NA NA NA NA NA Interval_126945 chr5 98030194 98031887 + 0 NA promoter-TSS (ENSMUSG00000029338.13) protein_coding-promoter-TSS (ENSMUSG00000029338.13) -527 ENSMUSG00000106518.1 ENSMUSG00000106518 ENSMUST00000195915 Gm42759 TEC Interval_165647 chr9 50658742 50660265 + 0 NA exon (ENSMUSG00000000168.9, exon 1 of 14) protein_coding-exon (ENSMUSG00000000168.9, exon 1 of 14) -9608 ENSMUSG00000000168.9 ENSMUSG00000000168 ENSMUST00000155417 Dlat protein_coding Interval_81447 chr18 60806165 60806947 + 0 NA intron (ENSMUSG00000024610.15, intron 1 of 5) protein_coding-intron (ENSMUSG00000024610.15, intron 1 of 7) 2651 ENSMUSG00000024610.15 ENSMUSG00000024610 ENSMUST00000238179 Cd74 protein_coding Interval_58241 chr15 31297081 31298257 + 0 NA exon (ENSMUSG00000022237.17, exon 3 of 3) protein_coding-exon (ENSMUSG00000022237.17, exon 3 of 3) 10525 ENSMUSG00000022237.17 ENSMUSG00000022237 ENSMUST00000227391 Ankrd33b protein_coding Interval_98196 chr2 149755263 149755610 + 0 NA intron (ENSMUSG00000087029.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000087029.1, intron 1 of 1) 12261 ENSMUSG00000081494.1 ENSMUSG00000081494 ENSMUST00000118417 Gm14130 processed_pseudogene Interval_92864 chr2 67090642 67091076 + 0 NA Intergenic Intergenic 103876 ENSMUSG00000086908.1 ENSMUSG00000086908 ENSMUST00000147939 Gm13598 lincRNA Interval_20327 chr10 116911937 116913247 + 0 NA intron (ENSMUSG00000064181.6, intron 8 of 10) protein_coding-intron (ENSMUSG00000064181.6, intron 7 of 9) -15673 ENSMUSG00000034057.8 ENSMUSG00000034057 ENSMUST00000048229 Myrfl protein_coding Interval_70555 chr17 11981553 11982300 + 0 NA intron (ENSMUSG00000023826.16, intron 8 of 10) protein_coding-intron (ENSMUSG00000023826.16, intron 9 of 11) -137403 ENSMUSG00000023827.8 ENSMUSG00000023827 ENSMUST00000167905 Agpat4 protein_coding Interval_153139 chr7 141609090 141609351 + 0 NA TTS (ENSMUSG00000097170.1) antisense-TTS (ENSMUSG00000097170.1) 4527 ENSMUSG00000097170.1 ENSMUSG00000097170 ENSMUST00000181275 Gm16982 antisense Interval_91757 chr2 49308683 49309321 + 0 NA exon (ENSMUSG00000081272.1, exon 1 of 1) processed_pseudogene-exon (ENSMUSG00000081272.1, exon 1 of 1) 847 ENSMUSG00000081272.1 ENSMUSG00000081272 ENSMUST00000119733 Ap2m1-ps processed_pseudogene Interval_114864 chr4 86524491 86525085 + 0 NA intron (ENSMUSG00000028492.13, intron 1 of 2) protein_coding-intron (ENSMUSG00000028492.13, intron 1 of 3) 14329 ENSMUSG00000028492.13 ENSMUSG00000028492 ENSMUST00000139694 Saxo1 protein_coding Interval_137748 chr6 82054818 82055052 + 0 NA intron (ENSMUSG00000035104.14, intron 1 of 2) protein_coding-intron (ENSMUSG00000035104.14, intron 1 of 2) -2354 ENSMUSG00000087136.1 ENSMUSG00000087136 ENSMUST00000145950 Gm15864 antisense Interval_56261 chr14 115213749 115215069 + 0 NA intron (ENSMUSG00000022112.14, intron 2 of 7) protein_coding-intron (ENSMUSG00000022112.14, intron 2 of 7) 122194 ENSMUSG00000022112.14 ENSMUSG00000022112 ENSMUST00000022707 Gpc5 protein_coding Interval_148302 chr7 80379372 80380064 + 0 NA promoter-TSS (ENSMUSG00000053158.10) protein_coding-promoter-TSS (ENSMUSG00000053158.10) 8153 ENSMUSG00000053158.10 ENSMUSG00000053158 ENSMUST00000206271 Fes protein_coding Interval_116855 chr4 117726342 117726676 + 0 NA intron (ENSMUSG00000108127.1, intron 3 of 3) protein_coding-intron (ENSMUSG00000108127.1, intron 1 of 1) 2034 ENSMUSG00000108127.1 ENSMUSG00000108127 ENSMUST00000204276 Gm12845 protein_coding Interval_95518 chr2 111179865 111180948 + 0 NA intron (ENSMUSG00000027157.10, intron 9 of 15) protein_coding-intron (ENSMUSG00000027157.10, intron 9 of 15) -2229 ENSMUSG00000084094.1 ENSMUSG00000084094 ENSMUST00000119282 Gm13961 processed_pseudogene Interval_47696 chr13 91380010 91380692 + 0 NA intron (ENSMUSG00000097182.2, intron 1 of 2) lincRNA-intron (ENSMUSG00000097182.2, intron 1 of 2) -6057 ENSMUSG00000099340.1 ENSMUSG00000099340 ENSMUST00000188207 Gm29540 sense_intronic Interval_56220 chr14 113372897 113373797 + 0 NA Intergenic Intergenic 58739 ENSMUSG00000058126.7 ENSMUSG00000058126 ENSMUST00000072359 Tpm3-rs7 protein_coding Interval_123790 chr5 35536218 35536784 + 0 NA Intergenic Intergenic -10930 ENSMUSG00000036596.6 ENSMUSG00000036596 ENSMUST00000132959 Cpz protein_coding Interval_68880 chr16 87757656 87758702 + 0 NA Intergenic Intergenic 3464 ENSMUSG00000088684.1 ENSMUSG00000088684 ENSMUST00000158059 Gm23994 snoRNA Interval_45507 chr13 55528490 55528692 + 0 NA promoter-TSS (ENSMUSG00000035711.5) protein_coding-promoter-TSS (ENSMUSG00000035711.5) -37 ENSMUSG00000035711.5 ENSMUSG00000035711 ENSMUST00000223563 Dok3 protein_coding Interval_129516 chr5 120677579 120678012 + 0 NA promoter-TSS (ENSMUSG00000029602.11) protein_coding-promoter-TSS (ENSMUSG00000029602.11) 4284 ENSMUSG00000029603.15 ENSMUSG00000029603 ENSMUST00000124079 Dtx1 protein_coding Interval_100752 chr2 172350739 172351379 + 0 NA intron (ENSMUSG00000027495.4, intron 1 of 2) protein_coding-intron (ENSMUSG00000027495.4, intron 1 of 2) 5494 ENSMUSG00000027495.4 ENSMUSG00000027495 ENSMUST00000028995 Fam210b protein_coding Interval_36964 chr12 55682183 55682384 + 0 NA intron (ENSMUSG00000021027.17, intron 32 of 39) protein_coding-intron (ENSMUSG00000021027.17, intron 32 of 40) 82856 ENSMUSG00000045440.4 ENSMUSG00000045440 ENSMUST00000051857 Insm2 protein_coding Interval_913 chr1 13125346 13128863 + 0 NA promoter-TSS (ENSMUSG00000042414.7) protein_coding-promoter-TSS (ENSMUSG00000042414.7) 59 ENSMUSG00000042414.7 ENSMUSG00000042414 ENSMUST00000047577 Prdm14 protein_coding Interval_170474 chr9 108214606 108215281 + 0 NA intron (ENSMUSG00000039952.15, intron 3 of 3) protein_coding-intron (ENSMUSG00000039952.15, intron 3 of 3) -23595 ENSMUSG00000102538.1 ENSMUSG00000102538 ENSMUST00000194491 Gm37230 TEC Interval_70110 chr17 5401840 5403121 + 0 NA intron (ENSMUSG00000101133.1, intron 2 of 3) antisense-intron (ENSMUSG00000101133.1, intron 2 of 3) 13717 ENSMUSG00000101133.1 ENSMUSG00000101133 ENSMUST00000190732 Gm29050 antisense Interval_159114 chr8 90793931 90794135 + 0 NA Intergenic Intergenic -3086 ENSMUSG00000105321.1 ENSMUSG00000105321 ENSMUST00000198683 Gm44382 miRNA Interval_129285 chr5 118680187 118681141 + 0 NA intron (ENSMUSG00000018076.12, intron 3 of 4) protein_coding-intron (ENSMUSG00000018076.12, intron 3 of 30) -6954 ENSMUSG00000107115.1 ENSMUSG00000107115 ENSMUST00000201451 Gm43052 TEC Interval_16304 chr10 62074229 62075195 + 0 NA Intergenic Intergenic 3589 ENSMUSG00000046687.6 ENSMUSG00000046687 ENSMUST00000053865 Gm5424 processed_pseudogene Interval_21857 chr11 4772951 4773479 + 0 NA intron (ENSMUSG00000009073.16, intron 16 of 16) protein_coding-intron (ENSMUSG00000009073.16, intron 16 of 16) -26437 ENSMUSG00000009075.2 ENSMUSG00000009075 ENSMUST00000009219 Cabp7 protein_coding Interval_50776 chr14 19774203 19774818 + 0 NA intron (ENSMUSG00000021806.4, intron 4 of 16) protein_coding-intron (ENSMUSG00000021806.4, intron 4 of 20) 23226 ENSMUSG00000021806.4 ENSMUSG00000021806 ENSMUST00000224057 Nid2 protein_coding Interval_60110 chr15 65825349 65825580 + 0 NA TTS (ENSMUSG00000015002.18) protein_coding-TTS (ENSMUSG00000015002.18) -25657 ENSMUSG00000015002.18 ENSMUSG00000015002 ENSMUST00000174749 Efr3a protein_coding Interval_47802 chr13 93102005 93103062 + 0 NA intron (ENSMUSG00000047419.5, intron 1 of 12) protein_coding-intron (ENSMUSG00000047419.5, intron 1 of 12) 7700 ENSMUSG00000114968.1 ENSMUSG00000114968 ENSMUST00000224009 A630019I02Rik antisense Interval_97230 chr2 132407047 132407264 + 0 NA Intergenic Intergenic -17586 ENSMUSG00000027345.6 ENSMUSG00000027345 ENSMUST00000124095 4921508D12Rik lincRNA Interval_11521 chr1 182416371 182417150 + 0 NA intron (ENSMUSG00000026510.10, intron 1 of 17) protein_coding-intron (ENSMUSG00000026510.10, intron 1 of 17) -7739 ENSMUSG00000073482.2 ENSMUSG00000073482 ENSMUST00000097444 Gm10517 TEC Interval_61038 chr15 78903308 78903809 + 0 NA promoter-TSS (ENSMUSG00000022436.16) protein_coding-promoter-TSS (ENSMUSG00000022436.16) -2860 ENSMUSG00000022436.16 ENSMUSG00000022436 ENSMUST00000229803 Sh3bp1 protein_coding Interval_165171 chr9 44985302 44986678 + 0 NA promoter-TSS (ENSMUSG00000032094.8) protein_coding-promoter-TSS (ENSMUSG00000032094.8) 38 ENSMUSG00000032094.8 ENSMUSG00000032094 ENSMUST00000214800 Cd3d protein_coding Interval_15336 chr10 44714674 44714964 + 0 NA promoter-TSS (ENSMUSG00000111362.1) lincRNA-promoter-TSS (ENSMUSG00000111362.1) -739 ENSMUSG00000111362.1 ENSMUSG00000111362 ENSMUST00000216787 Gm47389 lincRNA Interval_51911 chr14 33786094 33786285 + 0 NA Intergenic Intergenic 20852 ENSMUSG00000115134.1 ENSMUSG00000115134 ENSMUST00000227984 Gm49108 lincRNA Interval_112520 chr4 41767737 41768013 + 0 NA promoter-TSS (ENSMUSG00000073889.10) protein_coding-promoter-TSS (ENSMUSG00000073889.10) 76 ENSMUSG00000073889.10 ENSMUSG00000073889 ENSMUST00000142059 Il11ra1 protein_coding Interval_120674 chr4 150033107 150033919 + 0 NA Intergenic Intergenic -15500 ENSMUSG00000086665.1 ENSMUSG00000086665 ENSMUST00000134236 Gm13067 lincRNA Interval_122140 chr5 18036199 18036475 + 0 NA Intergenic Intergenic 73788 ENSMUSG00000028777.8 ENSMUSG00000028777 ENSMUST00000030561 Gnat3 protein_coding Interval_102353 chr3 22107560 22108703 + 0 NA intron (ENSMUSG00000027630.13, intron 2 of 4) protein_coding-intron (ENSMUSG00000027630.13, intron 1 of 15) -27016 ENSMUSG00000103293.1 ENSMUSG00000103293 ENSMUST00000195073 Gm5842 processed_pseudogene Interval_153696 chr8 4677281 4679180 + 0 NA promoter-TSS (ENSMUSG00000097308.1) lincRNA-promoter-TSS (ENSMUSG00000097308.1) 135 ENSMUSG00000048484.4 ENSMUSG00000048484 ENSMUST00000058918 Gm7461 TEC Interval_9763 chr1 161929472 161929961 + 0 NA Intergenic Intergenic 37569 ENSMUSG00000103158.5 ENSMUSG00000103158 ENSMUST00000194266 Gm31925 lincRNA Interval_112728 chr4 44448602 44448804 + 0 NA Intergenic Intergenic -36108 ENSMUSG00000077587.1 ENSMUSG00000077587 ENSMUST00000104399 Gm24376 snoRNA Interval_81397 chr18 60491005 60491727 + 0 NA intron (ENSMUSG00000038059.7, intron 1 of 1) protein_coding-intron (ENSMUSG00000038059.7, intron 1 of 1) 10210 ENSMUSG00000038059.7 ENSMUSG00000038059 ENSMUST00000237270 Smim3 protein_coding Interval_169285 chr9 96156002 96156255 + 0 NA intron (ENSMUSG00000041440.18, intron 10 of 15) protein_coding-intron (ENSMUSG00000041440.18, intron 11 of 15) -14788 ENSMUSG00000041440.18 ENSMUSG00000041440 ENSMUST00000189249 Gk5 protein_coding Interval_103607 chr3 51153613 51154032 + 0 NA Intergenic Intergenic 50162 ENSMUSG00000103464.1 ENSMUSG00000103464 ENSMUST00000194318 Gm38246 lincRNA Interval_16617 chr10 66072590 66073175 + 0 NA Intergenic Intergenic 51182 ENSMUSG00000100000.6 ENSMUSG00000100000 ENSMUST00000188279 1700023F02Rik lincRNA Interval_167695 chr9 72091134 72091517 + 0 NA intron (ENSMUSG00000032228.16, intron 3 of 19) protein_coding-intron (ENSMUSG00000032228.16, intron 3 of 19) 20326 ENSMUSG00000032228.16 ENSMUSG00000032228 ENSMUST00000184806 Tcf12 protein_coding Interval_126591 chr5 90553965 90554878 + 0 NA TTS (ENSMUSG00000029369.17) protein_coding-TTS (ENSMUSG00000029369.17) -4428 ENSMUSG00000106705.1 ENSMUSG00000106705 ENSMUST00000202112 Gm2602 processed_pseudogene Interval_88237 chr19 60953200 60953905 + 0 NA intron (ENSMUSG00000003228.9, intron 1 of 4) protein_coding-intron (ENSMUSG00000003228.9, intron 1 of 15) 13700 ENSMUSG00000096578.2 ENSMUSG00000096578 ENSMUST00000177598 Gm9529 processed_pseudogene Interval_58573 chr15 36253036 36253273 + 0 NA exon (ENSMUSG00000022280.9, exon 5 of 10) protein_coding-exon (ENSMUSG00000022280.9, exon 5 of 10) -12990 ENSMUSG00000098457.1 ENSMUSG00000098457 ENSMUST00000185150 Mir8097 miRNA Interval_60230 chr15 68534756 68535006 + 0 NA Intergenic Intergenic 76826 ENSMUSG00000116367.1 ENSMUSG00000116367 ENSMUST00000230783 Gm49414 processed_pseudogene Interval_66589 chr16 35449016 35449970 + 0 NA intron (ENSMUSG00000022844.8, intron 6 of 16) protein_coding-intron (ENSMUSG00000022844.8, intron 6 of 16) -9130 ENSMUSG00000095160.1 ENSMUSG00000095160 ENSMUST00000178681 Gm25548 miRNA Interval_169476 chr9 98016446 98016788 + 0 NA intron (ENSMUSG00000032452.12, intron 1 of 16) protein_coding-intron (ENSMUSG00000032452.12, intron 1 of 17) 13197 ENSMUSG00000090255.7 ENSMUSG00000090255 ENSMUST00000162911 4921534H16Rik antisense Interval_27694 chr11 69527096 69527818 + 0 NA intron (ENSMUSG00000005237.14, intron 4 of 13) protein_coding-intron (ENSMUSG00000005237.14, intron 3 of 84) -9068 ENSMUSG00000005237.14 ENSMUSG00000005237 ENSMUST00000154985 Dnah2 protein_coding Interval_164340 chr9 35484713 35485602 + 0 NA intron (ENSMUSG00000038119.15, intron 15 of 19) protein_coding-intron (ENSMUSG00000038119.15, intron 14 of 18) 10272 ENSMUSG00000065934.1 ENSMUSG00000065934 ENSMUST00000084000 Gm25630 snRNA Interval_100907 chr2 173273855 173277126 + 0 NA intron (ENSMUSG00000038400.15, intron 1 of 4) protein_coding-intron (ENSMUSG00000038400.15, intron 1 of 3) 699 ENSMUSG00000038400.15 ENSMUSG00000038400 ENSMUST00000124124 Pmepa1 protein_coding Interval_148718 chr7 84579033 84579574 + 0 NA exon (ENSMUSG00000097789.2, exon 3 of 3) protein_coding-exon (ENSMUSG00000097789.2, exon 3 of 3) -3461 ENSMUSG00000109513.1 ENSMUSG00000109513 ENSMUST00000208098 Gm44928 TEC Interval_122085 chr5 16684016 16684837 + 0 NA Intergenic Intergenic 46644 ENSMUSG00000059179.6 ENSMUSG00000059179 ENSMUST00000073014 Gm8991 processed_pseudogene Interval_159753 chr8 100940840 100941448 + 0 NA Intergenic Intergenic -214789 ENSMUSG00000109769.1 ENSMUSG00000109769 ENSMUST00000210760 Gm39232 lincRNA Interval_128570 chr5 114084650 114085786 + 0 NA intron (ENSMUSG00000042078.14, intron 1 of 6) protein_coding-intron (ENSMUSG00000042078.14, intron 1 of 15) 6149 ENSMUSG00000042078.14 ENSMUSG00000042078 ENSMUST00000150106 Svop protein_coding Interval_9004 chr1 153039906 153040845 + 0 NA intron (ENSMUSG00000042751.14, intron 1 of 1) protein_coding-intron (ENSMUSG00000042751.14, intron 1 of 10) 49132 ENSMUSG00000099969.1 ENSMUSG00000099969 ENSMUST00000190117 Gm28960 antisense Interval_57847 chr15 23089259 23090166 + 0 NA intron (ENSMUSG00000040420.15, intron 1 of 1) protein_coding-intron (ENSMUSG00000040420.15, intron 1 of 9) -65022 ENSMUSG00000094031.1 ENSMUSG00000094031 ENSMUST00000177548 Gm24656 snoRNA Interval_11957 chr1 187651225 187652659 + 0 NA promoter-TSS (ENSMUSG00000103961.1) antisense-promoter-TSS (ENSMUSG00000103961.1) -118 ENSMUSG00000103961.1 ENSMUSG00000103961 ENSMUST00000191663 Gm36388 antisense Interval_61014 chr15 78778082 78779475 + 0 NA intron (ENSMUSG00000033170.14, intron 16 of 19) protein_coding-intron (ENSMUSG00000033170.14, intron 17 of 20) -11614 ENSMUSG00000018169.12 ENSMUSG00000018169 ENSMUST00000128389 Mfng protein_coding Interval_140500 chr6 118849451 118849860 + 0 NA intron (ENSMUSG00000051331.16, intron 3 of 47) protein_coding-intron (ENSMUSG00000051331.16, intron 3 of 46) 14755 ENSMUSG00000089115.1 ENSMUSG00000089115 ENSMUST00000158490 Gm25905 snRNA Interval_15339 chr10 44738113 44738413 + 0 NA exon (ENSMUSG00000111494.1, exon 1 of 2) lincRNA-exon (ENSMUSG00000111494.1, exon 1 of 2) 637 ENSMUSG00000111494.1 ENSMUSG00000111494 ENSMUST00000213122 4930431F10Rik lincRNA Interval_146700 chr7 49521647 49523880 + 0 NA intron (ENSMUSG00000052512.17, intron 11 of 38) protein_coding-intron (ENSMUSG00000052512.17, intron 11 of 37) 53051 ENSMUSG00000102148.1 ENSMUSG00000102148 ENSMUST00000193746 Gm38059 TEC Interval_161925 chr8 123805377 123807549 + 0 NA intron (ENSMUSG00000019478.16, intron 1 of 7) protein_coding-intron (ENSMUSG00000019478.16, intron 1 of 6) -20866 ENSMUSG00000019478.16 ENSMUSG00000019478 ENSMUST00000212846 Rab4a protein_coding Interval_8579 chr1 143265236 143265647 + 0 NA Intergenic Intergenic -170825 ENSMUSG00000101795.2 ENSMUSG00000101795 ENSMUST00000185806 Gm5835 processed_pseudogene Interval_693 chr1 9957163 9957513 + 0 NA Intergenic Intergenic -9976 ENSMUSG00000104025.1 ENSMUSG00000104025 ENSMUST00000192299 E330040D14Rik TEC Interval_36475 chr12 45507728 45508053 + 0 NA intron (ENSMUSG00000112054.1, intron 4 of 4) lincRNA-intron (ENSMUSG00000112054.1, intron 4 of 4) 41594 ENSMUSG00000112054.1 ENSMUSG00000112054 ENSMUST00000219610 Gm33680 lincRNA Interval_160255 chr8 107498120 107499529 + 0 NA intron (ENSMUSG00000031930.11, intron 6 of 7) protein_coding-intron (ENSMUSG00000031930.11, intron 6 of 23) -52420 ENSMUSG00000065439.1 ENSMUSG00000065439 ENSMUST00000083505 Mir140 miRNA Interval_130147 chr5 124529484 124532706 + 0 NA promoter-TSS (ENSMUSG00000106662.1) TEC-promoter-TSS (ENSMUSG00000106662.1) -38 ENSMUSG00000106662.1 ENSMUSG00000106662 ENSMUST00000198678 Gm43034 TEC Interval_77722 chr17 94684624 94688077 + 0 NA Intergenic Intergenic -6539 ENSMUSG00000117586.1 ENSMUSG00000117586 ENSMUST00000234452 Gm50006 processed_pseudogene Interval_10061 chr1 165518457 165518963 + 0 NA TTS (ENSMUSG00000026567.16) protein_coding-TTS (ENSMUSG00000026567.16) 8799 ENSMUSG00000026567.16 ENSMUSG00000026567 ENSMUST00000124037 Adcy10 protein_coding Interval_116133 chr4 108001983 108002240 + 0 NA intron (ENSMUSG00000008932.10, intron 3 of 10) protein_coding-intron (ENSMUSG00000008932.10, intron 3 of 10) 28875 ENSMUSG00000028600.15 ENSMUSG00000028600 ENSMUST00000124265 Podn protein_coding Interval_51038 chr14 21734824 21735390 + 0 NA exon (ENSMUSG00000021768.15, exon 7 of 8) protein_coding-exon (ENSMUSG00000021768.15, exon 7 of 8) -6436 ENSMUSG00000084940.2 ENSMUSG00000084940 ENSMUST00000141656 Gm15935 antisense Interval_9025 chr1 153143978 153144889 + 0 NA intron (ENSMUSG00000026479.13, intron 9 of 22) protein_coding-intron (ENSMUSG00000026479.13, intron 10 of 23) -17199 ENSMUSG00000026479.13 ENSMUSG00000026479 ENSMUST00000188831 Lamc2 protein_coding Interval_53855 chr14 62798221 62799207 + 0 NA Intergenic Intergenic 19017 ENSMUSG00000115371.1 ENSMUSG00000115371 ENSMUST00000226895 Gm18146 processed_pseudogene Interval_33902 chr11 119272659 119273886 + 0 NA exon (ENSMUSG00000025579.14, exon 3 of 3) protein_coding-exon (ENSMUSG00000025579.14, exon 3 of 3) -1584 ENSMUSG00000025579.14 ENSMUSG00000025579 ENSMUST00000138510 Gaa protein_coding Interval_52337 chr14 45219037 45220761 + 0 NA promoter-TSS (ENSMUSG00000021830.14) protein_coding-promoter-TSS (ENSMUSG00000021830.14) 182 ENSMUSG00000049092.11 ENSMUSG00000049092 ENSMUST00000151749 Gpr137c protein_coding Interval_93879 chr2 77892622 77893010 + 0 NA intron (ENSMUSG00000027014.14, intron 19 of 19) protein_coding-intron (ENSMUSG00000027014.14, intron 19 of 19) -11349 ENSMUSG00000087353.1 ENSMUSG00000087353 ENSMUST00000154480 Gm13727 processed_transcript Interval_83771 chr19 4569191 4569714 + 0 NA intron (ENSMUSG00000024892.17, intron 1 of 2) protein_coding-intron (ENSMUSG00000024892.17, intron 2 of 20) -24956 ENSMUSG00000024892.17 ENSMUSG00000024892 ENSMUST00000238089 Pcx protein_coding Interval_42665 chr13 17789619 17790461 + 0 NA intron (ENSMUSG00000041297.8, intron 1 of 13) protein_coding-intron (ENSMUSG00000041297.8, intron 1 of 13) 15057 ENSMUSG00000041297.8 ENSMUSG00000041297 ENSMUST00000221775 Cdk13 protein_coding Interval_59222 chr15 49086762 49086988 + 0 NA Intergenic Intergenic 44089 ENSMUSG00000114976.1 ENSMUSG00000114976 ENSMUST00000227927 Gm2333 processed_pseudogene Interval_141305 chr6 127091570 127091989 + 0 NA intron (ENSMUSG00000038028.9, intron 2 of 4) protein_coding-intron (ENSMUSG00000038028.9, intron 3 of 5) -8518 ENSMUSG00000097525.2 ENSMUSG00000097525 ENSMUST00000180653 Platr31 antisense Interval_53578 chr14 59535690 59536011 + 0 NA intron (ENSMUSG00000021981.10, intron 9 of 10) protein_coding-intron (ENSMUSG00000021981.10, intron 9 of 10) 62089 ENSMUSG00000021982.14 ENSMUSG00000021982 ENSMUST00000223842 Cdadc1 protein_coding Interval_26253 chr11 55439644 55440452 + 0 NA Intergenic Intergenic -19723 ENSMUSG00000018593.13 ENSMUSG00000018593 ENSMUST00000125787 Sparc protein_coding Interval_56843 chr14 122378259 122378487 + 0 NA intron (ENSMUSG00000025545.10, intron 5 of 7) protein_coding-intron (ENSMUSG00000025545.10, intron 5 of 7) 9787 ENSMUSG00000095311.1 ENSMUSG00000095311 ENSMUST00000175481 Gm25464 snRNA Interval_109650 chr3 145738334 145739120 + 0 NA TTS (ENSMUSG00000105608.1) processed_pseudogene-TTS (ENSMUSG00000105608.1) 439 ENSMUSG00000105608.1 ENSMUSG00000105608 ENSMUST00000198263 Gm43408 processed_pseudogene Interval_108161 chr3 122077863 122078068 + 0 NA intron (ENSMUSG00000028125.14, intron 1 of 6) protein_coding-intron (ENSMUSG00000028125.14, intron 6 of 49) 54135 ENSMUSG00000104869.1 ENSMUSG00000104869 ENSMUST00000197868 Gm42544 TEC Interval_24487 chr11 33645216 33646302 + 0 NA exon (ENSMUSG00000053519.17, exon 2 of 8) protein_coding-exon (ENSMUSG00000053519.17, exon 2 of 8) 37779 ENSMUSG00000073052.4 ENSMUSG00000073052 ENSMUST00000238565 D130052B06Rik lincRNA Interval_125167 chr5 65035841 65037244 + 0 NA intron (ENSMUSG00000029185.14, intron 12 of 13) protein_coding-intron (ENSMUSG00000029185.14, intron 12 of 13) 55590 ENSMUSG00000037913.12 ENSMUSG00000037913 ENSMUST00000203117 Tmem156 protein_coding Interval_142597 chr6 143821221 143821441 + 0 NA Intergenic Intergenic 169536 ENSMUSG00000107796.1 ENSMUSG00000107796 ENSMUST00000204049 Gm44068 TEC Interval_167837 chr9 72985569 72986720 + 0 NA promoter-TSS (ENSMUSG00000086158.2) protein_coding-promoter-TSS (ENSMUSG00000086158.2) 558 ENSMUSG00000034563.16 ENSMUSG00000034563 ENSMUST00000138466 Ccpg1 protein_coding Interval_30499 chr11 94772420 94773102 + 0 NA Intergenic Intergenic 9739 ENSMUSG00000075610.9 ENSMUSG00000075610 ENSMUST00000162809 Tmem92 protein_coding Interval_155101 chr8 26477862 26478255 + 0 NA intron (ENSMUSG00000109961.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000109961.1, intron 1 of 2) -9218 ENSMUSG00000109961.1 ENSMUSG00000109961 ENSMUST00000209999 Gm31983 lincRNA Interval_57399 chr15 10578739 10579251 + 0 NA intron (ENSMUSG00000022246.14, intron 12 of 16) protein_coding-intron (ENSMUSG00000022246.14, intron 13 of 17) -17471 ENSMUSG00000052482.6 ENSMUSG00000052482 ENSMUST00000064353 Gm8174 processed_pseudogene Interval_151460 chr7 122760505 122761466 + 0 NA intron (ENSMUSG00000066189.9, intron 2 of 2) protein_coding-intron (ENSMUSG00000066189.9, intron 2 of 3) -59067 ENSMUSG00000108718.1 ENSMUSG00000108718 ENSMUST00000206285 Gm44749 TEC Interval_8961 chr1 152751953 152752335 + 0 NA promoter-TSS (ENSMUSG00000099868.1) sense_intronic-promoter-TSS (ENSMUSG00000099868.1) -320 ENSMUSG00000099868.1 ENSMUSG00000099868 ENSMUST00000191482 Gm28792 sense_intronic Interval_91472 chr2 39126781 39127058 + 0 NA intron (ENSMUSG00000035236.17, intron 4 of 17) protein_coding-intron (ENSMUSG00000035236.17, intron 3 of 17) -27045 ENSMUSG00000107833.1 ENSMUSG00000107833 ENSMUST00000204611 Gm18791 processed_pseudogene Interval_23120 chr11 20040808 20041993 + 0 NA Intergenic Intergenic 71509 ENSMUSG00000020152.7 ENSMUSG00000020152 ENSMUST00000134779 Actr2 protein_coding Interval_111538 chr4 22687428 22687758 + 0 NA Intergenic Intergenic -16464 ENSMUSG00000080762.1 ENSMUSG00000080762 ENSMUST00000121885 Gm11879 processed_pseudogene Interval_141780 chr6 134424847 134425698 + 0 NA promoter-TSS (ENSMUSG00000107767.1) lincRNA-promoter-TSS (ENSMUSG00000107767.1) -919 ENSMUSG00000107767.1 ENSMUSG00000107767 ENSMUST00000205104 Gm44448 lincRNA Interval_15663 chr10 53265794 53266005 + 0 NA Intergenic Intergenic -14382 ENSMUSG00000112709.1 ENSMUSG00000112709 ENSMUST00000219618 Gm19395 antisense Interval_152861 chr7 138879604 138879941 + 0 NA intron (ENSMUSG00000041769.13, intron 7 of 7) protein_coding-intron (ENSMUSG00000041769.13, intron 8 of 8) -11192 ENSMUSG00000109881.1 ENSMUSG00000109881 ENSMUST00000210611 Gm45507 antisense Interval_122962 chr5 27890086 27890581 + 0 NA Intergenic Intergenic 29884 ENSMUSG00000106390.1 ENSMUSG00000106390 ENSMUST00000199720 Gm5551 processed_pseudogene Interval_143748 chr7 16046094 16048796 + 0 NA intron (ENSMUSG00000070808.4, intron 1 of 14) protein_coding-intron (ENSMUSG00000070808.4, intron 1 of 14) 476 ENSMUSG00000070808.4 ENSMUSG00000070808 ENSMUST00000209251 Bicra protein_coding Interval_94394 chr2 90721337 90721543 + 0 NA intron (ENSMUSG00000051329.13, intron 29 of 36) protein_coding-intron (ENSMUSG00000051329.13, intron 29 of 36) -23930 ENSMUSG00000008200.15 ENSMUSG00000008200 ENSMUST00000123955 Fnbp4 protein_coding Interval_9419 chr1 156955843 156957084 + 0 NA Intergenic Intergenic 16625 ENSMUSG00000101905.1 ENSMUSG00000101905 ENSMUST00000186765 4930439D14Rik antisense Interval_115370 chr4 98253286 98253515 + 0 NA Intergenic Intergenic 15175 ENSMUSG00000083644.1 ENSMUSG00000083644 ENSMUST00000119234 Gm12787 processed_pseudogene Interval_13363 chr10 17187554 17187806 + 0 NA Intergenic Intergenic 70876 ENSMUSG00000088436.1 ENSMUSG00000088436 ENSMUST00000157811 Gm25382 snRNA Interval_87300 chr19 47463695 47466078 + 0 NA promoter-TSS (ENSMUSG00000053617.12) protein_coding-promoter-TSS (ENSMUSG00000053617.12) -48096 ENSMUSG00000097990.1 ENSMUSG00000097990 ENSMUST00000182109 Gm19557 antisense Interval_148103 chr7 79241926 79242397 + 0 NA Intergenic Intergenic 30650 ENSMUSG00000108387.1 ENSMUSG00000108387 ENSMUST00000206434 Gm31510 bidirectional_promoter_lncRNA Interval_129501 chr5 120590380 120590862 + 0 NA intron (ENSMUSG00000029601.13, intron 1 of 4) protein_coding-intron (ENSMUSG00000029601.13, intron 1 of 4) 1598 ENSMUSG00000029601.13 ENSMUSG00000029601 ENSMUST00000094391 Iqcd protein_coding Interval_96311 chr2 121542607 121543193 + 0 NA exon (ENSMUSG00000027242.14, exon 13 of 13) protein_coding-exon (ENSMUSG00000027242.14, exon 13 of 13) 8451 ENSMUSG00000027238.17 ENSMUSG00000027238 ENSMUST00000153704 Frmd5 protein_coding Interval_168384 chr9 79888286 79889170 + 0 NA intron (ENSMUSG00000034898.17, intron 2 of 6) protein_coding-intron (ENSMUSG00000034898.17, intron 2 of 5) -24472 ENSMUSG00000092581.1 ENSMUSG00000092581 ENSMUST00000172721 Gm3211 processed_transcript Interval_28069 chr11 72615932 72616147 + 0 NA TTS (ENSMUSG00000064567.1) snoRNA-TTS (ENSMUSG00000064567.1) 111 ENSMUSG00000064567.1 ENSMUSG00000064567 ENSMUST00000082633 Gm24143 snoRNA Interval_12080 chr1 189627965 189628820 + 0 NA Intergenic Intergenic 11842 ENSMUSG00000103087.1 ENSMUSG00000103087 ENSMUST00000192679 Gm38122 TEC Interval_26461 chr11 57992846 57993767 + 0 NA Intergenic Intergenic -15758 ENSMUSG00000037331.15 ENSMUSG00000037331 ENSMUST00000140500 Larp1 protein_coding Interval_167524 chr9 70234817 70235399 + 0 NA intron (ENSMUSG00000032220.10, intron 1 of 17) protein_coding-intron (ENSMUSG00000032220.10, intron 1 of 27) 27758 ENSMUSG00000032220.10 ENSMUSG00000032220 ENSMUST00000034745 Myo1e protein_coding Interval_160220 chr8 107226311 107226653 + 0 NA Intergenic Intergenic 36766 ENSMUSG00000057657.4 ENSMUSG00000057657 ENSMUST00000080443 Rps18-ps3 processed_pseudogene Interval_31515 chr11 101126064 101126277 + 0 NA TTS (ENSMUSG00000035198.9) protein_coding-TTS (ENSMUSG00000035198.9) 1670 ENSMUSG00000035198.9 ENSMUSG00000035198 ENSMUST00000137844 Tubg1 protein_coding Interval_80741 chr18 46733628 46734902 + 0 NA exon (ENSMUSG00000032905.5, exon 4 of 4) protein_coding-exon (ENSMUSG00000032905.5, exon 4 of 4) -5910 ENSMUSG00000033022.8 ENSMUSG00000033022 ENSMUST00000234222 Cdo1 protein_coding Interval_218 KV575232.1 131376 132004 + 0 NA NA NA NA NA Interval_24664 chr11 35751124 35751506 + 0 NA Intergenic Intergenic -18169 ENSMUSG00000018846.8 ENSMUSG00000018846 ENSMUST00000018990 Pank3 protein_coding Interval_150648 chr7 113079966 113081186 + 0 NA Intergenic Intergenic -39122 ENSMUSG00000088671.1 ENSMUSG00000088671 ENSMUST00000158046 Gm23662 rRNA Interval_169636 chr9 99587657 99588428 + 0 NA Intergenic Intergenic 11962 ENSMUSG00000032469.12 ENSMUSG00000032469 ENSMUST00000136884 Dbr1 protein_coding Interval_156242 chr8 46483714 46485106 + 0 NA intron (ENSMUSG00000018796.13, intron 2 of 5) protein_coding-intron (ENSMUSG00000018796.13, intron 1 of 20) -10820 ENSMUSG00000109807.1 ENSMUSG00000109807 ENSMUST00000211328 Gm45244 TEC Interval_145820 chr7 39579955 39581413 + 0 NA TTS (ENSMUSG00000108621.1) lincRNA-TTS (ENSMUSG00000108621.1) 3074 ENSMUSG00000099934.1 ENSMUSG00000099934 ENSMUST00000190766 Gm17983 processed_pseudogene Interval_16282 chr10 61928461 61929873 + 0 NA intron (ENSMUSG00000058806.15, intron 2 of 40) protein_coding-intron (ENSMUSG00000058806.15, intron 2 of 33) -30457 ENSMUSG00000112574.1 ENSMUSG00000112574 ENSMUST00000218711 Gm5750 processed_pseudogene Interval_59092 chr15 43607826 43608205 + 0 NA Intergenic Intergenic 130774 ENSMUSG00000022337.7 ENSMUSG00000022337 ENSMUST00000227055 Emc2 protein_coding Interval_144255 chr7 24044299 24044524 + 0 NA Intergenic Intergenic -8843 ENSMUSG00000118318.1 ENSMUSG00000118318 ENSMUST00000086012 Vmn1r183 protein_coding Interval_159095 chr8 90347428 90350403 + 0 NA promoter-TSS (ENSMUSG00000043668.13) protein_coding-promoter-TSS (ENSMUSG00000043668.13) -784 ENSMUSG00000043668.13 ENSMUSG00000043668 ENSMUST00000176034 Tox3 protein_coding Interval_78785 chr18 20611236 20611662 + 0 NA intron (ENSMUSG00000085595.1, intron 1 of 2) antisense-intron (ENSMUSG00000085595.1, intron 1 of 2) 53203 ENSMUSG00000044393.15 ENSMUSG00000044393 ENSMUST00000121837 Dsg2 protein_coding Interval_121049 chr4 152434760 152435675 + 0 NA intron (ENSMUSG00000028931.12, intron 2 of 16) protein_coding-intron (ENSMUSG00000028931.12, intron 2 of 14) 24417 ENSMUSG00000090057.1 ENSMUSG00000090057 ENSMUST00000161416 Gm16333 antisense Interval_56091 chr14 105589086 105589839 + 0 NA promoter-TSS (ENSMUSG00000115149.1) processed_transcript-promoter-TSS (ENSMUSG00000115149.1) -14 ENSMUSG00000115149.1 ENSMUSG00000115149 ENSMUST00000227651 9330188P03Rik processed_transcript Interval_132662 chr5 147016825 147017034 + 0 NA exon (ENSMUSG00000016520.7, exon 10 of 10) protein_coding-exon (ENSMUSG00000016520.7, exon 10 of 10) 2106 ENSMUSG00000016520.7 ENSMUSG00000016520 ENSMUST00000123092 Lnx2 protein_coding Interval_164179 chr9 32223302 32224491 + 0 NA promoter-TSS (ENSMUSG00000041444.14) protein_coding-promoter-TSS (ENSMUSG00000041444.14) -696 ENSMUSG00000041444.14 ENSMUSG00000041444 ENSMUST00000174730 Arhgap32 protein_coding Interval_94378 chr2 90619614 90621004 + 0 NA Intergenic Intergenic -39662 ENSMUSG00000025314.16 ENSMUSG00000025314 ENSMUST00000168621 Ptprj protein_coding Interval_116363 chr4 110286514 110286788 + 0 NA promoter-TSS (ENSMUSG00000028546.17) protein_coding-promoter-TSS (ENSMUSG00000028546.17) 876 ENSMUSG00000028546.17 ENSMUSG00000028546 ENSMUST00000142722 Elavl4 protein_coding Interval_114360 chr4 74269152 74269392 + 0 NA exon (ENSMUSG00000028397.13, exon 2 of 2) protein_coding-exon (ENSMUSG00000028397.13, exon 2 of 2) 6463 ENSMUSG00000028397.13 ENSMUSG00000028397 ENSMUST00000150439 Kdm4c protein_coding Interval_45830 chr13 58401305 58403356 + 0 NA promoter-TSS (ENSMUSG00000035367.9) protein_coding-promoter-TSS (ENSMUSG00000035367.9) 82 ENSMUSG00000035367.9 ENSMUSG00000035367 ENSMUST00000224479 Rmi1 protein_coding Interval_41101 chr12 111178927 111179477 + 0 NA intron (ENSMUSG00000083193.1, intron 1 of 3) protein_coding-intron (ENSMUSG00000021277.16, intron 1 of 11) 5289 ENSMUSG00000083193.1 ENSMUSG00000083193 ENSMUST00000121608 4930595D18Rik protein_coding Interval_24340 chr11 32524446 32524764 + 0 NA intron (ENSMUSG00000044056.3, intron 1 of 2) protein_coding-intron (ENSMUSG00000044056.3, intron 1 of 3) 7476 ENSMUSG00000044056.3 ENSMUSG00000044056 ENSMUST00000109377 Efcab9 protein_coding Interval_60099 chr15 65537939 65538472 + 0 NA Intergenic Intergenic 149943 ENSMUSG00000115402.1 ENSMUSG00000115402 ENSMUST00000227091 Gm49243 processed_pseudogene Interval_151150 chr7 118827995 118828341 + 0 NA exon (ENSMUSG00000030982.19, exon 1 of 1) protein_coding-exon (ENSMUSG00000030982.19, exon 1 of 1) 2464 ENSMUSG00000030982.19 ENSMUSG00000030982 ENSMUST00000209103 Vps35l protein_coding Interval_79862 chr18 35620760 35620970 + 0 NA intron (ENSMUSG00000024354.13, intron 3 of 3) protein_coding-intron (ENSMUSG00000024354.13, intron 13 of 14) 6331 ENSMUSG00000024354.13 ENSMUSG00000024354 ENSMUST00000236196 Slc23a1 protein_coding Interval_12508 chr1 194610640 194610918 + 0 NA Intergenic Intergenic -7439 ENSMUSG00000026640.12 ENSMUSG00000026640 ENSMUST00000124785 Plxna2 protein_coding Interval_146552 chr7 46779808 46780032 + 0 NA intron (ENSMUSG00000014418.16, intron 8 of 22) protein_coding-intron (ENSMUSG00000014418.16, intron 8 of 22) 5626 ENSMUSG00000110087.1 ENSMUSG00000110087 ENSMUST00000211528 Gm45309 sense_intronic Interval_145255 chr7 30972803 30974293 + 0 NA promoter-TSS (ENSMUSG00000001247.16) protein_coding-promoter-TSS (ENSMUSG00000001247.16) -226 ENSMUSG00000001247.16 ENSMUSG00000001247 ENSMUST00000147431 Lsr protein_coding Interval_52949 chr14 52206585 52207707 + 0 NA promoter-TSS (ENSMUSG00000053754.14) protein_coding-promoter-TSS (ENSMUSG00000053754.14) 2748 ENSMUSG00000093044.1 ENSMUSG00000093044 ENSMUST00000175303 Snord8 snoRNA Interval_59501 chr15 54677031 54678091 + 0 NA Intergenic Intergenic -68141 ENSMUSG00000037362.8 ENSMUSG00000037362 ENSMUST00000050027 Ccn3 protein_coding Interval_128233 chr5 111907833 111908391 + 0 NA Intergenic Intergenic 36123 ENSMUSG00000106060.1 ENSMUSG00000106060 ENSMUST00000197648 Gm42488 lincRNA Interval_147686 chr7 71991335 71993181 + 0 NA intron (ENSMUSG00000108800.1, intron 2 of 2) lincRNA-intron (ENSMUSG00000108800.1, intron 2 of 2) -30240 ENSMUSG00000108480.1 ENSMUSG00000108480 ENSMUST00000205873 Gm36633 lincRNA Interval_24278 chr11 32050950 32052030 + 0 NA intron (ENSMUSG00000020297.10, intron 3 of 4) protein_coding-intron (ENSMUSG00000020297.10, intron 3 of 4) 49738 ENSMUSG00000086386.1 ENSMUSG00000086386 ENSMUST00000145338 Gm12108 lincRNA Interval_92217 chr2 56908592 56910136 + 0 NA Intergenic Intergenic 123553 ENSMUSG00000098437.1 ENSMUSG00000098437 ENSMUST00000184814 Mir195b miRNA Interval_35428 chr12 21565158 21565489 + 0 NA Intergenic Intergenic 22016 ENSMUSG00000109975.1 ENSMUSG00000109975 ENSMUST00000209258 Gm19196 transcribed_unprocessed_pseudogene Interval_88389 chr2 4651597 4652313 + 0 NA exon (ENSMUSG00000039449.14, exon 1 of 10) protein_coding-exon (ENSMUSG00000039449.14, exon 1 of 10) 126 ENSMUSG00000039449.14 ENSMUSG00000039449 ENSMUST00000144650 Prpf18 protein_coding Interval_145360 chr7 34227038 34227276 + 0 NA TTS (ENSMUSG00000036427.5) protein_coding-TTS (ENSMUSG00000036427.5) 3106 ENSMUSG00000036427.5 ENSMUSG00000036427 ENSMUST00000138773 Gpi1 protein_coding Interval_88870 chr2 11893706 11894012 + 0 NA Intergenic Intergenic -6223 ENSMUSG00000103542.1 ENSMUSG00000103542 ENSMUST00000193884 Gm34768 unprocessed_pseudogene Interval_127294 chr5 102166170 102166572 + 0 NA Intergenic Intergenic 4080 ENSMUSG00000106189.1 ENSMUSG00000106189 ENSMUST00000196547 Gm42933 processed_pseudogene Interval_112224 chr4 36775276 36775664 + 0 NA intron (ENSMUSG00000045083.14, intron 1 of 2) protein_coding-intron (ENSMUSG00000045083.14, intron 1 of 7) 19422 ENSMUSG00000087843.1 ENSMUSG00000087843 ENSMUST00000157218 Gm23314 snRNA Interval_111202 chr4 14801300 14801907 + 0 NA Intergenic Intergenic 24984 ENSMUSG00000040550.17 ENSMUSG00000040550 ENSMUST00000151012 Otud6b protein_coding Interval_11183 chr1 179928691 179929289 + 0 NA Intergenic Intergenic -3579 ENSMUSG00000104418.1 ENSMUSG00000104418 ENSMUST00000193272 Gm37070 processed_pseudogene Interval_99712 chr2 164435269 164436236 + 0 NA intron (ENSMUSG00000017009.3, intron 1 of 4) protein_coding-intron (ENSMUSG00000017009.3, intron 1 of 4) 8135 ENSMUSG00000017009.3 ENSMUSG00000017009 ENSMUST00000142909 Sdc4 protein_coding Interval_59103 chr15 43869496 43870342 + 0 NA exon (ENSMUSG00000054409.5, exon 1 of 2) protein_coding-exon (ENSMUSG00000054409.5, exon 1 of 2) 117 ENSMUSG00000054409.5 ENSMUSG00000054409 ENSMUST00000067469 Tmem74 protein_coding Interval_143100 chr6 149339834 149340228 + 0 NA Intergenic Intergenic 13795 ENSMUSG00000084083.1 ENSMUSG00000084083 ENSMUST00000121073 Gm15782 processed_pseudogene Interval_7260 chr1 128295213 128295447 + 0 NA exon (ENSMUSG00000026354.8, exon 10 of 17) protein_coding-exon (ENSMUSG00000026354.8, exon 10 of 17) -3066 ENSMUSG00000026354.8 ENSMUSG00000026354 ENSMUST00000162067 Lct protein_coding Interval_150662 chr7 113166749 113167482 + 0 NA Intergenic Intergenic -25100 ENSMUSG00000110009.1 ENSMUSG00000110009 ENSMUST00000210408 4930543E12Rik lincRNA Interval_114673 chr4 83656598 83657139 + 0 NA intron (ENSMUSG00000052407.17, intron 12 of 25) protein_coding-intron (ENSMUSG00000052407.17, intron 12 of 25) -44216 ENSMUSG00000080793.1 ENSMUSG00000080793 ENSMUST00000118595 Cbx3-ps3 processed_pseudogene Interval_15679 chr10 53461295 53461735 + 0 NA Intergenic Intergenic -13449 ENSMUSG00000056219.7 ENSMUSG00000056219 ENSMUST00000168554 Tmem229b-ps processed_pseudogene Interval_3299 chr1 55890842 55891051 + 0 NA Intergenic Intergenic -40295 ENSMUSG00000099950.1 ENSMUSG00000099950 ENSMUST00000188040 9130227L01Rik lincRNA Interval_64192 chr16 8947927 8948517 + 0 NA intron (ENSMUSG00000116525.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000116525.1, intron 1 of 2) 3309 ENSMUSG00000116525.1 ENSMUSG00000116525 ENSMUST00000230927 Gm30371 lincRNA Interval_75878 chr17 72515887 72516115 + 0 NA intron (ENSMUSG00000055471.7, intron 1 of 3) protein_coding-intron (ENSMUSG00000055471.7, intron 1 of 28) 6642 ENSMUSG00000117247.1 ENSMUSG00000117247 ENSMUST00000233448 Gm49923 TEC Interval_166396 chr9 58928140 58928929 + 0 NA intron (ENSMUSG00000032340.8, intron 8 of 14) protein_coding-intron (ENSMUSG00000032340.8, intron 8 of 28) -50717 ENSMUSG00000111846.1 ENSMUSG00000111846 ENSMUST00000216941 Gm47271 antisense Interval_34069 chr11 120295960 120298333 + 0 NA Intergenic Intergenic 7353 ENSMUSG00000039741.15 ENSMUSG00000039741 ENSMUST00000143667 Bahcc1 protein_coding Interval_114245 chr4 69892395 69893454 + 0 NA Intergenic Intergenic 33155 ENSMUSG00000046341.5 ENSMUSG00000046341 ENSMUST00000120560 Gm11223 processed_pseudogene Interval_80535 chr18 43508430 43509118 + 0 NA Intergenic Intergenic 21106 ENSMUSG00000118018.1 ENSMUSG00000118018 ENSMUST00000235649 AC156546.1 lincRNA Interval_58371 chr15 33867240 33868229 + 0 NA Intergenic Intergenic 36286 ENSMUSG00000115318.1 ENSMUSG00000115318 ENSMUST00000227474 Gm49089 TEC Interval_21118 chr10 126660938 126661644 + 0 NA Intergenic Intergenic -2707 ENSMUSG00000112208.1 ENSMUSG00000112208 ENSMUST00000219762 Gm40797 lincRNA Interval_33945 chr11 119584005 119585340 + 0 NA Intergenic Intergenic 36042 ENSMUSG00000087675.1 ENSMUSG00000087675 ENSMUST00000135630 Gm11762 processed_transcript Interval_164148 chr9 31989053 31990307 + 0 NA intron (ENSMUSG00000111771.1, intron 2 of 3) lincRNA-intron (ENSMUSG00000111771.1, intron 2 of 3) 15780 ENSMUSG00000111771.1 ENSMUSG00000111771 ENSMUST00000216368 Gm47465 lincRNA Interval_125553 chr5 70429757 70430396 + 0 NA Intergenic Intergenic 120871 ENSMUSG00000094803.1 ENSMUSG00000094803 ENSMUST00000083135 Gm26072 snRNA Interval_26113 chr11 54405732 54406508 + 0 NA intron (ENSMUSG00000020332.7, intron 9 of 12) protein_coding-intron (ENSMUSG00000020332.7, intron 10 of 13) 1980 ENSMUSG00000084212.1 ENSMUSG00000084212 ENSMUST00000117995 Gm12225 processed_pseudogene Interval_29149 chr11 80703941 80704172 + 0 NA intron (ENSMUSG00000035441.14, intron 1 of 9) protein_coding-intron (ENSMUSG00000035441.14, intron 1 of 21) 75947 ENSMUSG00000035441.14 ENSMUSG00000035441 ENSMUST00000125944 Myo1d protein_coding Interval_144003 chr7 18904634 18905435 + 0 NA intron (ENSMUSG00000074358.9, intron 1 of 3) protein_coding-intron (ENSMUSG00000074358.9, intron 1 of 13) -12682 ENSMUSG00000074358.9 ENSMUSG00000074358 ENSMUST00000139077 Ccdc61 protein_coding Interval_151446 chr7 122551985 122552279 + 0 NA intron (ENSMUSG00000052889.11, intron 9 of 17) protein_coding-intron (ENSMUSG00000052889.11, intron 9 of 16) -38803 ENSMUSG00000108341.1 ENSMUSG00000108341 ENSMUST00000205565 Gm44746 TEC Interval_2055 chr1 36143043 36143239 + 0 NA TTS (ENSMUSG00000037470.14) protein_coding-TTS (ENSMUSG00000037470.14) 1172 ENSMUSG00000098752.1 ENSMUSG00000098752 ENSMUST00000184790 Mir6897 miRNA Interval_21260 chr10 127533828 127535364 + 0 NA promoter-TSS (ENSMUSG00000040258.6) protein_coding-promoter-TSS (ENSMUSG00000040258.6) -37 ENSMUSG00000040258.6 ENSMUSG00000040258 ENSMUST00000095266 Nxph4 protein_coding Interval_24138 chr11 30674436 30674663 + 0 NA Intergenic Intergenic -24962 ENSMUSG00000060923.5 ENSMUSG00000060923 ENSMUST00000074613 Acyp2 protein_coding Interval_28740 chr11 78008478 78008724 + 0 NA intron (ENSMUSG00000037791.15, intron 3 of 10) protein_coding-intron (ENSMUSG00000037791.15, intron 3 of 14) -15028 ENSMUSG00000037791.15 ENSMUSG00000037791 ENSMUST00000125079 Phf12 protein_coding Interval_103378 chr3 41042234 41042437 + 0 NA Intergenic Intergenic 28335 ENSMUSG00000049940.7 ENSMUSG00000049940 ENSMUST00000124636 Pgrmc2 protein_coding Interval_121732 chr5 5940218 5940549 + 0 NA Intergenic Intergenic 74641 ENSMUSG00000088692.1 ENSMUSG00000088692 ENSMUST00000158067 Gm23838 snRNA Interval_118266 chr4 129928395 129928916 + 0 NA promoter-TSS (ENSMUSG00000028784.14) protein_coding-promoter-TSS (ENSMUSG00000028784.14) -18892 ENSMUSG00000028784.14 ENSMUSG00000028784 ENSMUST00000128007 Spocd1 protein_coding Interval_89987 chr2 27079348 27079641 + 0 NA exon (ENSMUSG00000036040.14, exon 1 of 19) protein_coding-exon (ENSMUSG00000036040.14, exon 1 of 19) -11626 ENSMUSG00000009214.9 ENSMUSG00000009214 ENSMUST00000163967 Mymk protein_coding Interval_126051 chr5 77118546 77120192 + 0 NA intron (ENSMUSG00000085858.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000085858.1, intron 1 of 2) 2979 ENSMUSG00000085858.1 ENSMUSG00000085858 ENSMUST00000156195 Gm15831 lincRNA Interval_67451 chr16 48821469 48821705 + 0 NA Intergenic Intergenic 4731 ENSMUSG00000022650.7 ENSMUSG00000022650 ENSMUST00000023328 Retnlb protein_coding Interval_26791 chr11 60512642 60513373 + 0 NA intron (ENSMUSG00000042678.17, intron 6 of 11) protein_coding-intron (ENSMUSG00000042678.17, intron 56 of 65) -23374 ENSMUSG00000042650.3 ENSMUSG00000042650 ENSMUST00000044250 Alkbh5 protein_coding Interval_73175 chr17 35274372 35275436 + 0 NA Intergenic Intergenic 4327 ENSMUSG00000092444.1 ENSMUSG00000092444 ENSMUST00000173950 Gm18733 transcribed_unprocessed_pseudogene Interval_104428 chr3 65558375 65558748 + 0 NA Intergenic Intergenic 12521 ENSMUSG00000034640.9 ENSMUSG00000034640 ENSMUST00000154094 Tiparp protein_coding Interval_23881 chr11 27578889 27579181 + 0 NA Intergenic Intergenic -70935 ENSMUSG00000082243.1 ENSMUSG00000082243 ENSMUST00000122413 Gm3810 processed_pseudogene Interval_86449 chr19 40599528 40600103 + 0 NA intron (ENSMUSG00000025008.15, intron 13 of 13) protein_coding-intron (ENSMUSG00000025008.15, intron 13 of 13) 10380 ENSMUSG00000097792.2 ENSMUSG00000097792 ENSMUST00000181109 Gm27042 lincRNA Interval_157432 chr8 70322293 70323467 + 0 NA TTS (ENSMUSG00000087408.10) protein_coding-TTS (ENSMUSG00000087408.10) -6937 ENSMUSG00000109523.1 ENSMUSG00000109523 ENSMUST00000207684 Gdf1 protein_coding Interval_108085 chr3 121433866 121434476 + 0 NA intron (ENSMUSG00000053931.11, intron 1 of 2) protein_coding-intron (ENSMUSG00000053931.11, intron 1 of 6) 6125 ENSMUSG00000106022.1 ENSMUSG00000106022 ENSMUST00000198374 Gm42929 TEC Interval_161644 chr8 121771117 121771996 + 0 NA intron (ENSMUSG00000025318.13, intron 1 of 1) protein_coding-intron (ENSMUSG00000025318.13, intron 2 of 4) 18080 ENSMUSG00000025318.13 ENSMUSG00000025318 ENSMUST00000172209 Jph3 protein_coding Interval_91893 chr2 51066039 51066779 + 0 NA Intergenic Intergenic 82701 ENSMUSG00000017144.8 ENSMUSG00000017144 ENSMUST00000140864 Rnd3 protein_coding Interval_114139 chr4 64207290 64208600 + 0 NA Intergenic Intergenic 59392 ENSMUSG00000073821.11 ENSMUSG00000073821 ENSMUST00000166003 8030451A03Rik processed_transcript Interval_167411 chr9 68797931 68799077 + 0 NA intron (ENSMUSG00000032238.17, intron 1 of 5) protein_coding-intron (ENSMUSG00000032238.17, intron 1 of 10) 144613 ENSMUSG00000032238.17 ENSMUSG00000032238 ENSMUST00000113624 Rora protein_coding Interval_52120 chr14 36866933 36867423 + 0 NA Intergenic Intergenic -11134 ENSMUSG00000065894.1 ENSMUSG00000065894 ENSMUST00000083960 n-R5s46 rRNA Interval_146174 chr7 44521558 44522186 + 0 NA intron (ENSMUSG00000038670.11, intron 4 of 27) protein_coding-intron (ENSMUSG00000038670.11, intron 4 of 27) 9404 ENSMUSG00000008193.13 ENSMUSG00000008193 ENSMUST00000098483 Spib protein_coding Interval_110049 chr3 152761175 152761779 + 0 NA intron (ENSMUSG00000039047.17, intron 9 of 13) protein_coding-intron (ENSMUSG00000039047.17, intron 10 of 11) 20584 ENSMUSG00000090095.1 ENSMUSG00000090095 ENSMUST00000161849 Rpl29-ps1 processed_pseudogene Interval_81748 chr18 64356266 64357687 + 0 NA intron (ENSMUSG00000045991.19, intron 1 of 1) protein_coding-intron (ENSMUSG00000045991.19, intron 1 of 1) 16956 ENSMUSG00000045991.19 ENSMUSG00000045991 ENSMUST00000175965 Onecut2 protein_coding Interval_148775 chr7 86887569 86887846 + 0 NA Intergenic Intergenic 20227 ENSMUSG00000092376.1 ENSMUSG00000092376 ENSMUST00000174049 Gm19203 processed_pseudogene Interval_4779 chr1 78569587 78569811 + 0 NA Intergenic Intergenic 39809 ENSMUSG00000099364.1 ENSMUSG00000099364 ENSMUST00000190504 5730419F03Rik lincRNA Interval_145885 chr7 41400248 41400475 + 0 NA exon (ENSMUSG00000092592.1, exon 8 of 8) protein_coding-exon (ENSMUSG00000092592.1, exon 8 of 8) 6663 ENSMUSG00000091864.1 ENSMUSG00000091864 ENSMUST00000170929 Gm17102 lincRNA Interval_155935 chr8 41114246 41115299 + 0 NA promoter-TSS (ENSMUSG00000045636.16) protein_coding-promoter-TSS (ENSMUSG00000045636.16) 61662 ENSMUSG00000085672.1 ENSMUSG00000085672 ENSMUST00000125903 Gm16193 antisense Interval_37120 chr12 58601757 58602089 + 0 NA Intergenic Intergenic -161983 ENSMUSG00000112487.1 ENSMUSG00000112487 ENSMUST00000219517 Gm18873 processed_pseudogene Interval_158856 chr8 87373635 87373878 + 0 NA promoter-TSS (ENSMUSG00000098768.1) lincRNA-promoter-TSS (ENSMUSG00000098768.1) -681 ENSMUSG00000098768.1 ENSMUSG00000098768 ENSMUST00000184995 Gm27207 lincRNA Interval_93434 chr2 73041693 73041880 + 0 NA Intergenic Intergenic -55070 ENSMUSG00000079286.1 ENSMUSG00000079286 ENSMUST00000112062 Gm11084 protein_coding Interval_78774 chr18 20559646 20560363 + 0 NA intron (ENSMUSG00000044393.15, intron 1 of 6) protein_coding-intron (ENSMUSG00000044393.15, intron 1 of 14) 1758 ENSMUSG00000044393.15 ENSMUSG00000044393 ENSMUST00000121837 Dsg2 protein_coding Interval_159797 chr8 103760934 103761509 + 0 NA Intergenic Intergenic 157422 ENSMUSG00000110336.1 ENSMUSG00000110336 ENSMUST00000211119 4933400L20Rik lincRNA Interval_61774 chr15 84053734 84054799 + 0 NA intron (ENSMUSG00000022441.17, intron 2 of 31) protein_coding-intron (ENSMUSG00000022441.17, intron 1 of 2) 23927 ENSMUSG00000081925.1 ENSMUSG00000081925 ENSMUST00000117961 Rpl31-ps22 processed_pseudogene Interval_69735 chr16 95942844 95944002 + 0 NA Intergenic Intergenic 43025 ENSMUSG00000085903.1 ENSMUSG00000085903 ENSMUST00000144984 Gm15340 lincRNA Interval_96993 chr2 130329873 130330624 + 0 NA intron (ENSMUSG00000053552.14, intron 6 of 16) protein_coding-intron (ENSMUSG00000053552.14, intron 6 of 16) 34309 ENSMUSG00000053552.14 ENSMUSG00000053552 ENSMUST00000110287 Ebf4 protein_coding Interval_90733 chr2 32179752 32180731 + 0 NA intron (ENSMUSG00000039262.16, intron 1 of 31) protein_coding-intron (ENSMUSG00000039262.16, intron 1 of 29) 7070 ENSMUSG00000099155.1 ENSMUSG00000099155 ENSMUST00000184513 Gm27805 miRNA Interval_34714 chr12 8884703 8886021 + 0 NA intron (ENSMUSG00000042976.6, intron 1 of 2) lincRNA-intron (ENSMUSG00000042976.6, intron 1 of 2) -7980 ENSMUSG00000042976.6 ENSMUSG00000042976 ENSMUST00000218928 9930038B18Rik lincRNA Interval_14792 chr10 39959671 39960896 + 0 NA promoter-TSS (ENSMUSG00000071335.5) transcribed_unprocessed_pseudogene-promoter-TSS (ENSMUSG00000071335.5) -193 ENSMUSG00000071335.5 ENSMUSG00000071335 ENSMUST00000239163 Mfsd4b3-ps transcribed_unprocessed_pseudogene Interval_167268 chr9 66913305 66914262 + 0 NA intron (ENSMUSG00000036943.9, intron 1 of 7) protein_coding-intron (ENSMUSG00000036943.9, intron 1 of 7) 5904 ENSMUSG00000036943.9 ENSMUSG00000036943 ENSMUST00000041139 Rab8b protein_coding Interval_94725 chr2 93804891 93805348 + 0 NA intron (ENSMUSG00000027198.16, intron 5 of 11) protein_coding-intron (ENSMUSG00000027198.16, intron 4 of 13) 10549 ENSMUSG00000081353.2 ENSMUSG00000081353 ENSMUST00000119441 Gm13818 processed_pseudogene Interval_13755 chr10 21834983 21835256 + 0 NA intron (ENSMUSG00000097107.1, intron 3 of 4) lincRNA-intron (ENSMUSG00000097107.1, intron 3 of 4) 9732 ENSMUSG00000097107.1 ENSMUSG00000097107 ENSMUST00000180731 Platr6 lincRNA Interval_19589 chr10 104383568 104384181 + 0 NA Intergenic Intergenic 87333 ENSMUSG00000089182.1 ENSMUSG00000089182 ENSMUST00000158557 Gm22945 snRNA Interval_146976 chr7 56716623 56717066 + 0 NA exon (ENSMUSG00000055026.13, exon 10 of 10) protein_coding-exon (ENSMUSG00000055026.13, exon 10 of 10) -31430 ENSMUSG00000108488.1 ENSMUSG00000108488 ENSMUST00000206218 Gm44979 processed_pseudogene Interval_36939 chr12 55483966 55485123 + 0 NA Intergenic Intergenic 7266 ENSMUSG00000021025.8 ENSMUSG00000021025 ENSMUST00000219869 Nfkbia protein_coding Interval_97698 chr2 142894759 142895129 + 0 NA intron (ENSMUSG00000038844.10, intron 1 of 26) protein_coding-intron (ENSMUSG00000038844.10, intron 1 of 25) 6575 ENSMUSG00000038844.10 ENSMUSG00000038844 ENSMUST00000212106 Kif16b protein_coding Interval_133613 chr6 7669075 7672978 + 0 NA Intergenic Intergenic 21846 ENSMUSG00000029752.12 ENSMUSG00000029752 ENSMUST00000148349 Asns protein_coding Interval_100090 chr2 167014520 167016007 + 0 NA promoter-TSS (ENSMUSG00000017999.16) protein_coding-promoter-TSS (ENSMUSG00000017999.16) -47 ENSMUSG00000017999.16 ENSMUSG00000017999 ENSMUST00000127468 Ddx27 protein_coding Interval_84353 chr19 10303924 10305579 + 0 NA intron (ENSMUSG00000035735.10, intron 1 of 19) protein_coding-intron (ENSMUSG00000035735.10, intron 1 of 19) 13825 ENSMUSG00000118330.1 ENSMUSG00000118330 ENSMUST00000237496 Gm30042 antisense Interval_135154 chr6 37007139 37007835 + 0 NA intron (ENSMUSG00000038665.15, intron 19 of 32) protein_coding-intron (ENSMUSG00000038665.15, intron 19 of 32) 50637 ENSMUSG00000107310.1 ENSMUSG00000107310 ENSMUST00000202891 Gm7452 transcribed_processed_pseudogene Interval_90069 chr2 27704641 27704890 + 0 NA intron (ENSMUSG00000015846.15, intron 2 of 10) protein_coding-intron (ENSMUSG00000015846.15, intron 1 of 9) -20454 ENSMUSG00000015846.15 ENSMUSG00000015846 ENSMUST00000148756 Rxra protein_coding Interval_164896 chr9 42884927 42886075 + 0 NA intron (ENSMUSG00000032017.14, intron 1 of 20) protein_coding-intron (ENSMUSG00000032017.14, intron 1 of 20) -23372 ENSMUSG00000076355.2 ENSMUSG00000076355 ENSMUST00000102400 Gm27509 miRNA Interval_119725 chr4 139497538 139498260 + 0 NA Intergenic Intergenic -76821 ENSMUSG00000041025.15 ENSMUSG00000041025 ENSMUST00000174078 Iffo2 protein_coding Interval_53478 chr14 57753523 57754293 + 0 NA intron (ENSMUSG00000021959.16, intron 1 of 2) protein_coding-intron (ENSMUSG00000021959.16, intron 1 of 2) -7787 ENSMUSG00000021959.16 ENSMUSG00000021959 ENSMUST00000173077 Lats2 protein_coding Interval_49817 chr13 116457974 116458417 + 0 NA Intergenic Intergenic -96501 ENSMUSG00000114451.1 ENSMUSG00000114451 ENSMUST00000225190 Gm47912 processed_pseudogene Interval_121632 chr5 4079060 4079284 + 0 NA intron (ENSMUSG00000040407.18, intron 47 of 47) protein_coding-intron (ENSMUSG00000040407.18, intron 47 of 47) 5601 ENSMUSG00000106535.1 ENSMUSG00000106535 ENSMUST00000198500 Gm43031 sense_intronic Interval_120881 chr4 151259846 151261826 + 0 NA intron (ENSMUSG00000014592.21, intron 6 of 24) protein_coding-intron (ENSMUSG00000014592.21, intron 6 of 23) -115634 ENSMUSG00000085593.1 ENSMUSG00000085593 ENSMUST00000129097 4930589P08Rik antisense Interval_95669 chr2 113885385 113885679 + 0 NA Intergenic Intergenic 35030 ENSMUSG00000096006.1 ENSMUSG00000096006 ENSMUST00000178049 Gm21596 processed_pseudogene Interval_126231 chr5 83450947 83452222 + 0 NA Intergenic Intergenic -13210 ENSMUSG00000104537.1 ENSMUSG00000104537 ENSMUST00000196348 Gm44303 miRNA Interval_29626 chr11 85555409 85556347 + 0 NA intron (ENSMUSG00000059439.15, intron 8 of 14) protein_coding-intron (ENSMUSG00000059439.15, intron 18 of 24) 62119 ENSMUSG00000087779.1 ENSMUSG00000087779 ENSMUST00000157154 Gm23765 snRNA Interval_23387 chr11 22095479 22095744 + 0 NA exon (ENSMUSG00000042302.14, exon 13 of 24) protein_coding-exon (ENSMUSG00000042302.14, exon 13 of 24) -93901 ENSMUSG00000005917.15 ENSMUSG00000005917 ENSMUST00000147486 Otx1 protein_coding Interval_29215 chr11 81604612 81605433 + 0 NA intron (ENSMUSG00000020704.13, intron 1 of 9) protein_coding-intron (ENSMUSG00000020704.13, intron 1 of 9) 17661 ENSMUSG00000087534.1 ENSMUSG00000087534 ENSMUST00000156193 Gm11418 antisense Interval_14067 chr10 26441656 26442008 + 0 NA Intergenic Intergenic -51266 ENSMUSG00000112797.1 ENSMUSG00000112797 ENSMUST00000219589 Gm30034 lincRNA Interval_6044 chr1 94805980 94806956 + 0 NA Intergenic Intergenic 9385 ENSMUSG00000100518.1 ENSMUSG00000100518 ENSMUST00000185490 4930440C22Rik lincRNA Interval_44917 chr13 49736666 49736870 + 0 NA Intergenic Intergenic -13697 ENSMUSG00000118398.1 ENSMUSG00000118398 ENSMUST00000238441 Gm19334 processed_pseudogene Interval_7923 chr1 134596426 134597778 + 0 NA intron (ENSMUSG00000042207.17, intron 6 of 25) protein_coding-intron (ENSMUSG00000042207.17, intron 6 of 26) -25698 ENSMUSG00000042207.17 ENSMUSG00000042207 ENSMUST00000191572 Kdm5b protein_coding Interval_106169 chr3 94303283 94303503 + 0 NA Intergenic Intergenic -6743 ENSMUSG00000028145.9 ENSMUSG00000028145 ENSMUST00000198494 Them4 protein_coding Interval_65348 chr16 21762695 21762953 + 0 NA exon (ENSMUSG00000022853.7, exon 7 of 7) protein_coding-exon (ENSMUSG00000022853.7, exon 7 of 7) -11289 ENSMUSG00000088758.1 ENSMUSG00000088758 ENSMUST00000158133 Gm24898 snRNA Interval_128913 chr5 116040403 116040782 + 0 NA TTS (ENSMUSG00000079278.2) protein_coding-TTS (ENSMUSG00000079278.2) -8279 ENSMUSG00000090728.1 ENSMUSG00000090728 ENSMUST00000164753 Gm17420 pseudogene Interval_94105 chr2 84211122 84211361 + 0 NA Intergenic Intergenic 61186 ENSMUSG00000093115.1 ENSMUSG00000093115 ENSMUST00000175374 Gm25972 miRNA Interval_154364 chr8 14996034 14997021 + 0 NA intron (ENSMUSG00000071176.10, intron 1 of 2) protein_coding-intron (ENSMUSG00000071176.10, intron 27 of 28) -14779 ENSMUSG00000055675.6 ENSMUSG00000055675 ENSMUST00000184243 Kbtbd11 protein_coding Interval_156845 chr8 61041922 61042519 + 0 NA intron (ENSMUSG00000031644.19, intron 11 of 34) protein_coding-intron (ENSMUSG00000031644.19, intron 11 of 32) -7829 ENSMUSG00000109708.1 ENSMUSG00000109708 ENSMUST00000211661 Gm45809 TEC Interval_116096 chr4 107637662 107638648 + 0 NA Intergenic Intergenic 45425 ENSMUSG00000028610.16 ENSMUSG00000028610 ENSMUST00000131508 Dmrtb1 protein_coding Interval_36129 chr12 36181263 36181534 + 0 NA intron (ENSMUSG00000036188.4, intron 2 of 7) protein_coding-intron (ENSMUSG00000036188.4, intron 4 of 9) 9030 ENSMUSG00000113511.1 ENSMUSG00000113511 ENSMUST00000221263 Gm19046 processed_pseudogene Interval_29307 chr11 82826907 82829012 + 0 NA intron (ENSMUSG00000020696.18, intron 1 of 6) protein_coding-intron (ENSMUSG00000020696.18, intron 1 of 5) 18133 ENSMUSG00000020696.18 ENSMUSG00000020696 ENSMUST00000126660 Rffl protein_coding Interval_51407 chr14 27288802 27289280 + 0 NA intron (ENSMUSG00000021895.10, intron 5 of 13) protein_coding-intron (ENSMUSG00000021895.10, intron 2 of 10) 50979 ENSMUSG00000114888.1 ENSMUSG00000114888 ENSMUST00000225718 Gm49616 TEC Interval_99377 chr2 160421229 160421928 + 0 NA Intergenic Intergenic -54513 ENSMUSG00000074622.4 ENSMUSG00000074622 ENSMUST00000099126 Mafb protein_coding Interval_92141 chr2 54023237 54024227 + 0 NA Intergenic Intergenic 61820 ENSMUSG00000075334.2 ENSMUSG00000075334 ENSMUST00000100089 Rprm protein_coding Interval_171837 chr9 121641507 121643262 + 0 NA promoter-TSS (ENSMUSG00000032528.5) protein_coding-promoter-TSS (ENSMUSG00000032528.5) -377 ENSMUSG00000032528.5 ENSMUSG00000032528 ENSMUST00000149959 Vipr1 protein_coding Interval_92502 chr2 60152271 60153612 + 0 NA intron (ENSMUSG00000026987.16, intron 2 of 3) protein_coding-intron (ENSMUSG00000026987.16, intron 2 of 3) 18886 ENSMUSG00000082330.1 ENSMUSG00000082330 ENSMUST00000119390 Ldha-ps processed_pseudogene Interval_137046 chr6 66940560 66940790 + 0 NA intron (ENSMUSG00000036402.13, intron 2 of 3) protein_coding-intron (ENSMUSG00000036402.13, intron 2 of 4) 43784 ENSMUSG00000036402.13 ENSMUSG00000036402 ENSMUST00000204862 Gng12 protein_coding Interval_132657 chr5 146986142 146986430 + 0 NA Intergenic Intergenic -22486 ENSMUSG00000016510.11 ENSMUSG00000016510 ENSMUST00000140526 Mtif3 protein_coding Interval_139087 chr6 94923229 94924011 + 0 NA Intergenic Intergenic -20214 ENSMUSG00000108187.1 ENSMUSG00000108187 ENSMUST00000203778 4930511E03Rik lincRNA Interval_9264 chr1 155658393 155658616 + 0 NA intron (ENSMUSG00000033701.13, intron 6 of 7) protein_coding-intron (ENSMUSG00000033701.13, intron 6 of 7) 93180 ENSMUSG00000026468.14 ENSMUSG00000026468 ENSMUST00000195275 Lhx4 protein_coding Interval_134535 chr6 29396016 29397201 + 0 NA promoter-TSS (ENSMUSG00000029769.16) protein_coding-promoter-TSS (ENSMUSG00000029769.16) -9 ENSMUSG00000092956.1 ENSMUSG00000092956 ENSMUST00000175215 Gm26220 miRNA Interval_57551 chr15 12280909 12281178 + 0 NA Intergenic Intergenic -5626 ENSMUSG00000115594.1 ENSMUSG00000115594 ENSMUST00000227442 Gm46497 processed_pseudogene Interval_17677 chr10 79091398 79092020 + 0 NA intron (ENSMUSG00000060301.6, intron 3 of 4) protein_coding-intron (ENSMUSG00000060301.6, intron 3 of 5) 5816 ENSMUSG00000060301.6 ENSMUSG00000060301 ENSMUST00000219729 2610008E11Rik protein_coding Interval_159131 chr8 90891959 90893209 + 0 NA promoter-TSS (ENSMUSG00000109863.1) TEC-promoter-TSS (ENSMUSG00000109863.1) -571 ENSMUSG00000109863.1 ENSMUSG00000109863 ENSMUST00000211364 Gm45643 TEC Interval_112470 chr4 41436557 41437473 + 0 NA intron (ENSMUSG00000028438.16, intron 1 of 2) protein_coding-intron (ENSMUSG00000028438.16, intron 1 of 9) 27831 ENSMUSG00000028438.16 ENSMUSG00000028438 ENSMUST00000131532 Kif24 protein_coding Interval_27524 chr11 68393622 68395064 + 0 NA intron (ENSMUSG00000020902.12, intron 2 of 7) protein_coding-intron (ENSMUSG00000020902.12, intron 2 of 7) -7331 ENSMUSG00000020902.12 ENSMUSG00000020902 ENSMUST00000135141 Ntn1 protein_coding Interval_143961 chr7 18577844 18578166 + 0 NA intron (ENSMUSG00000109525.1, intron 1 of 1) processed_pseudogene-intron (ENSMUSG00000109525.1, intron 1 of 1) 1017 ENSMUSG00000109525.1 ENSMUSG00000109525 ENSMUST00000208120 Gm19091 processed_pseudogene Interval_12671 chr10 4250734 4251912 + 0 NA Intergenic Intergenic -38209 ENSMUSG00000111266.1 ENSMUSG00000111266 ENSMUST00000213553 Gm30570 lincRNA Interval_88519 chr2 5797019 5798859 + 0 NA TTS (ENSMUSG00000039128.13) protein_coding-TTS (ENSMUSG00000039128.13) 25180 ENSMUSG00000039128.13 ENSMUSG00000039128 ENSMUST00000150876 Cdc123 protein_coding Interval_43128 chr13 24501247 24501620 + 0 NA promoter-TSS (ENSMUSG00000036006.20) protein_coding-promoter-TSS (ENSMUSG00000036006.20) -92 ENSMUSG00000036006.20 ENSMUSG00000036006 ENSMUST00000177489 Ripor2 protein_coding Interval_47998 chr13 94958122 94958566 + 0 NA Intergenic Intergenic -44014 ENSMUSG00000113871.1 ENSMUSG00000113871 ENSMUST00000221950 Gm48349 processed_pseudogene Interval_146796 chr7 51626921 51627980 + 0 NA intron (ENSMUSG00000030500.6, intron 3 of 8) protein_coding-intron (ENSMUSG00000030500.6, intron 3 of 11) -2030 ENSMUSG00000030500.6 ENSMUSG00000030500 ENSMUST00000208597 Slc17a6 protein_coding Interval_87627 chr19 53809636 53810379 + 0 NA intron (ENSMUSG00000043639.15, intron 1 of 1) protein_coding-intron (ENSMUSG00000043639.15, intron 1 of 1) 15121 ENSMUSG00000089679.1 ENSMUSG00000089679 ENSMUST00000162724 Gm16299 antisense Interval_73466 chr17 37573756 37575071 + 0 NA exon (ENSMUSG00000092292.3, exon 2 of 2) protein_coding-exon (ENSMUSG00000092292.3, exon 2 of 2) 3250 ENSMUSG00000092292.3 ENSMUSG00000092292 ENSMUST00000216181 Olfr113 protein_coding Interval_82148 chr18 68048578 68048944 + 0 NA intron (ENSMUSG00000024544.9, intron 1 of 5) protein_coding-intron (ENSMUSG00000024544.9, intron 1 of 5) 69613 ENSMUSG00000117891.1 ENSMUSG00000117891 ENSMUST00000236198 Gm41764 antisense Interval_63760 chr15 103277902 103278176 + 0 NA intron (ENSMUSG00000060992.9, intron 1 of 7) protein_coding-intron (ENSMUSG00000060992.9, intron 1 of 8) 5127 ENSMUSG00000060992.9 ENSMUSG00000060992 ENSMUST00000230893 Copz1 protein_coding Interval_56426 chr14 118672696 118673986 + 0 NA intron (ENSMUSG00000032849.14, intron 1 of 29) protein_coding-intron (ENSMUSG00000032849.14, intron 1 of 30) 26151 ENSMUSG00000032849.14 ENSMUSG00000032849 ENSMUST00000227480 Abcc4 protein_coding Interval_9473 chr1 157480048 157481019 + 0 NA intron (ENSMUSG00000033488.11, intron 1 of 3) protein_coding-intron (ENSMUSG00000033488.11, intron 9 of 9) 18581 ENSMUSG00000033488.11 ENSMUSG00000033488 ENSMUST00000194220 Cryzl2 protein_coding Interval_54888 chr14 76004515 76005371 + 0 NA intron (ENSMUSG00000067995.4, intron 2 of 7) protein_coding-intron (ENSMUSG00000067995.4, intron 2 of 7) 5922 ENSMUSG00000067995.4 ENSMUSG00000067995 ENSMUST00000088922 Gtf2f2 protein_coding Interval_64286 chr16 10231476 10231949 + 0 NA intron (ENSMUSG00000039200.16, intron 1 of 5) protein_coding-intron (ENSMUSG00000039200.16, intron 6 of 10) -4188 ENSMUSG00000115943.1 ENSMUSG00000115943 ENSMUST00000230210 Gm49455 antisense Interval_82014 chr18 67204564 67206109 + 0 NA promoter-TSS (ENSMUSG00000109901.2) protein_coding-promoter-TSS (ENSMUSG00000109901.2) -30 ENSMUSG00000109901.2 ENSMUSG00000109901 ENSMUST00000210564 Chmp1b protein_coding Interval_46084 chr13 61397287 61397797 + 0 NA Intergenic Intergenic -39345 ENSMUSG00000021440.7 ENSMUSG00000021440 ENSMUST00000225321 Cts7 protein_coding Interval_86131 chr19 36936281 36936910 + 0 NA intron (ENSMUSG00000040565.8, intron 1 of 37) protein_coding-intron (ENSMUSG00000040565.8, intron 1 of 37) -16996 ENSMUSG00000047632.11 ENSMUSG00000047632 ENSMUST00000057337 Fgfbp3 protein_coding Interval_90361 chr2 29979229 29979546 + 0 NA promoter-TSS (ENSMUSG00000057738.14) protein_coding-promoter-TSS (ENSMUSG00000057738.14) -690 ENSMUSG00000057738.14 ENSMUSG00000057738 ENSMUST00000201758 Sptan1 protein_coding Interval_67907 chr16 59403598 59403947 + 0 NA Intergenic Intergenic -3560 ENSMUSG00000074991.5 ENSMUSG00000074991 ENSMUST00000114341 Gabrr3 protein_coding Interval_40912 chr12 109837150 109837422 + 0 NA Intergenic Intergenic 10283 ENSMUSG00000113711.1 ENSMUSG00000113711 ENSMUST00000221611 Gm9661 processed_pseudogene Interval_28186 chr11 73858119 73858345 + 0 NA Intergenic Intergenic -6778 ENSMUSG00000094488.2 ENSMUSG00000094488 ENSMUST00000102523 Olfr393 protein_coding Interval_64790 chr16 15832742 15833035 + 0 NA intron (ENSMUSG00000022672.8, intron 78 of 85) protein_coding-intron (ENSMUSG00000022672.8, intron 78 of 85) 30422 ENSMUSG00000022671.13 ENSMUSG00000022671 ENSMUST00000117136 Mzt2 protein_coding Interval_137214 chr6 70118661 70118935 + 0 NA Intergenic Intergenic -1178 ENSMUSG00000076577.2 ENSMUSG00000076577 ENSMUST00000103378 Igkv8-30 IG_V_gene Interval_109308 chr3 138814290 138815794 + 0 NA intron (ENSMUSG00000028152.10, intron 1 of 7) protein_coding-intron (ENSMUSG00000028152.10, intron 1 of 7) 14120 ENSMUSG00000086123.3 ENSMUSG00000086123 ENSMUST00000153140 Gm16060 processed_pseudogene Interval_7904 chr1 134494413 134495368 + 0 NA intron (ENSMUSG00000042229.9, intron 1 of 1) protein_coding-intron (ENSMUSG00000042229.9, intron 1 of 1) 242 ENSMUSG00000042229.9 ENSMUSG00000042229 ENSMUST00000047978 Rabif protein_coding Interval_95778 chr2 116101353 116101933 + 0 NA Intergenic Intergenic -25547 ENSMUSG00000103562.1 ENSMUSG00000103562 ENSMUST00000195368 2810405F15Rik TEC Interval_29327 chr11 82965000 82965629 + 0 NA TTS (ENSMUSG00000054404.13) protein_coding-TTS (ENSMUSG00000054404.13) -4688 ENSMUSG00000086327.2 ENSMUSG00000086327 ENSMUST00000216469 Slfn5os antisense Interval_124246 chr5 42070181 42071019 + 0 NA intron (ENSMUSG00000067285.4, intron 1 of 2) protein_coding-intron (ENSMUSG00000067285.4, intron 1 of 2) 2640 ENSMUSG00000067285.4 ENSMUSG00000067285 ENSMUST00000087332 Gm16223 protein_coding Interval_144898 chr7 28821419 28821859 + 0 NA TTS (ENSMUSG00000015165.16) protein_coding-TTS (ENSMUSG00000015165.16) -3578 ENSMUSG00000053898.12 ENSMUSG00000053898 ENSMUST00000137834 Ech1 protein_coding Interval_90798 chr2 32665592 32666014 + 0 NA intron (ENSMUSG00000026814.16, intron 2 of 14) protein_coding-intron (ENSMUSG00000026814.16, intron 2 of 14) -7040 ENSMUSG00000026814.16 ENSMUSG00000026814 ENSMUST00000156306 Eng protein_coding Interval_172363 chrX 13757410 13757850 + 0 NA intron (ENSMUSG00000031012.17, intron 1 of 23) protein_coding-intron (ENSMUSG00000031012.17, intron 2 of 24) 28400 ENSMUSG00000031012.17 ENSMUSG00000031012 ENSMUST00000155989 Cask protein_coding Interval_25703 chr11 50896957 50897866 + 0 NA Intergenic Intergenic -9910 ENSMUSG00000048728.15 ENSMUSG00000048728 ENSMUST00000136599 Zfp454 protein_coding Interval_58781 chr15 38042983 38043676 + 0 NA intron (ENSMUSG00000037487.7, intron 5 of 58) protein_coding-intron (ENSMUSG00000037487.7, intron 5 of 58) -14956 ENSMUSG00000065852.1 ENSMUSG00000065852 ENSMUST00000083918 Gm22353 snoRNA Interval_57929 chr15 25536465 25537551 + 0 NA exon (ENSMUSG00000115204.1, exon 4 of 6) lincRNA-exon (ENSMUSG00000115204.1, exon 4 of 6) 56083 ENSMUSG00000115204.1 ENSMUSG00000115204 ENSMUST00000228618 Gm36642 lincRNA Interval_89068 chr2 15388858 15389354 + 0 NA Intergenic Intergenic 3488 ENSMUSG00000083631.2 ENSMUSG00000083631 ENSMUST00000122198 Gm13366 processed_pseudogene Interval_67879 chr16 58541758 58542115 + 0 NA Intergenic Intergenic 13769 ENSMUSG00000116914.1 ENSMUSG00000116914 ENSMUST00000231586 Gm20942 processed_pseudogene Interval_54237 chr14 66779378 66780020 + 0 NA Intergenic Intergenic -4809 ENSMUSG00000057913.3 ENSMUSG00000057913 ENSMUST00000225384 Gm10032 lincRNA Interval_4425 chr1 74077236 74077706 + 0 NA intron (ENSMUSG00000055322.16, intron 2 of 32) protein_coding-intron (ENSMUSG00000055322.16, intron 2 of 34) 21205 ENSMUSG00000055322.16 ENSMUSG00000055322 ENSMUST00000190599 Tns1 protein_coding Interval_5047 chr1 84667396 84667899 + 0 NA exon (ENSMUSG00000102481.1, exon 1 of 1) TEC-exon (ENSMUSG00000102481.1, exon 1 of 1) 1796 ENSMUSG00000102481.1 ENSMUSG00000102481 ENSMUST00000195352 Gm37925 TEC Interval_143387 chr7 6285998 6287112 + 0 NA promoter-TSS (ENSMUSG00000054893.15) protein_coding-promoter-TSS (ENSMUSG00000054893.15) -59 ENSMUSG00000054893.15 ENSMUSG00000054893 ENSMUST00000147784 Zfp667 protein_coding Interval_58118 chr15 28070680 28072091 + 0 NA intron (ENSMUSG00000115773.1, intron 1 of 5) lincRNA-intron (ENSMUSG00000115773.1, intron 1 of 5) 30376 ENSMUSG00000115058.1 ENSMUSG00000115058 ENSMUST00000227963 Gm19883 processed_pseudogene Interval_126431 chr5 88542787 88543474 + 0 NA Intergenic Intergenic 2026 ENSMUSG00000106322.1 ENSMUSG00000106322 ENSMUST00000196352 Gm43432 processed_pseudogene Interval_37818 chr12 72252226 72252831 + 0 NA intron (ENSMUSG00000021087.18, intron 3 of 8) protein_coding-intron (ENSMUSG00000021087.18, intron 3 of 8) -15980 ENSMUSG00000021087.18 ENSMUSG00000021087 ENSMUST00000221756 Rtn1 protein_coding Interval_140890 chr6 122617172 122618203 + 0 NA Intergenic Intergenic -5860 ENSMUSG00000065721.1 ENSMUSG00000065721 ENSMUST00000083787 Gm26168 misc_RNA Interval_146002 chr7 43037086 43037438 + 0 NA intron (ENSMUSG00000091528.9, intron 6 of 6) protein_coding-intron (ENSMUSG00000091528.9, intron 6 of 6) 18497 ENSMUSG00000091528.9 ENSMUSG00000091528 ENSMUST00000166914 Vmn2r126 protein_coding Interval_45223 chr13 53267742 53268120 + 0 NA intron (ENSMUSG00000021464.14, intron 1 of 8) protein_coding-intron (ENSMUSG00000021464.14, intron 1 of 8) 7727 ENSMUSG00000021464.14 ENSMUSG00000021464 ENSMUST00000149299 Ror2 protein_coding Interval_23873 chr11 27376027 27376363 + 0 NA Intergenic Intergenic 42191 ENSMUSG00000080735.1 ENSMUSG00000080735 ENSMUST00000117426 Gm12075 processed_pseudogene Interval_174470 chrX 152920325 152920780 + 0 NA Intergenic Intergenic 3208 ENSMUSG00000064999.1 ENSMUSG00000064999 ENSMUST00000083065 Gm26035 misc_RNA Interval_64611 chr16 13652255 13653203 + 0 NA intron (ENSMUSG00000022685.9, intron 7 of 23) protein_coding-intron (ENSMUSG00000022685.9, intron 7 of 23) 15409 ENSMUSG00000022685.9 ENSMUSG00000022685 ENSMUST00000229251 Parn protein_coding Interval_110895 chr4 9668494 9669707 + 0 NA promoter-TSS (ENSMUSG00000028207.18) protein_coding-promoter-TSS (ENSMUSG00000028207.18) -179 ENSMUSG00000092724.1 ENSMUSG00000092724 ENSMUST00000174983 Gm25677 miRNA Interval_97102 chr2 131244029 131244232 + 0 NA intron (ENSMUSG00000037523.13, intron 3 of 3) protein_coding-intron (ENSMUSG00000037523.13, intron 5 of 6) 2196 ENSMUSG00000037523.13 ENSMUSG00000037523 ENSMUST00000132694 Mavs protein_coding Interval_18462 chr10 86328568 86328894 + 0 NA intron (ENSMUSG00000020044.13, intron 1 of 2) protein_coding-intron (ENSMUSG00000020044.13, intron 1 of 4) 28177 ENSMUSG00000020044.13 ENSMUSG00000020044 ENSMUST00000132307 Timp3 protein_coding Interval_162366 chr8 127449486 127450034 + 0 NA intron (ENSMUSG00000025812.18, intron 1 of 2) protein_coding-intron (ENSMUSG00000025812.18, intron 19 of 23) -111675 ENSMUSG00000090074.1 ENSMUSG00000090074 ENSMUST00000161478 Gm6921 processed_pseudogene Interval_93639 chr2 75412345 75413366 + 0 NA Intergenic Intergenic -23202 ENSMUSG00000087504.1 ENSMUSG00000087504 ENSMUST00000135329 Gm13658 lincRNA Interval_93484 chr2 73457615 73457959 + 0 NA intron (ENSMUSG00000075284.10, intron 1 of 7) protein_coding-intron (ENSMUSG00000075284.10, intron 1 of 7) -1918 ENSMUSG00000086069.1 ENSMUSG00000086069 ENSMUST00000145170 Gm13708 lincRNA Interval_53287 chr14 55787956 55789180 + 0 NA promoter-TSS (ENSMUSG00000022221.14) protein_coding-promoter-TSS (ENSMUSG00000022221.14) -2216 ENSMUSG00000022221.14 ENSMUSG00000022221 ENSMUST00000226203 Ripk3 protein_coding Interval_116240 chr4 108977919 108978625 + 0 NA Intergenic Intergenic -6195 ENSMUSG00000086483.1 ENSMUSG00000086483 ENSMUST00000140919 8030443G20Rik antisense Interval_74944 chr17 57672150 57672576 + 0 NA Intergenic Intergenic -69436 ENSMUSG00000117082.1 ENSMUSG00000117082 ENSMUST00000233731 Gm18139 processed_pseudogene Interval_148217 chr7 79943513 79943763 + 0 NA Intergenic Intergenic -5549 ENSMUSG00000077059.1 ENSMUSG00000077059 ENSMUST00000103871 Gm24541 miRNA Interval_1667 chr1 30898398 30899452 + 0 NA Intergenic Intergenic -30387 ENSMUSG00000104315.1 ENSMUSG00000104315 ENSMUST00000192050 Gm37906 TEC Interval_84817 chr19 17028573 17030999 + 0 NA intron (ENSMUSG00000039126.10, intron 6 of 19) protein_coding-intron (ENSMUSG00000039126.10, intron 6 of 19) 27401 ENSMUSG00000098298.1 ENSMUSG00000098298 ENSMUST00000184854 Gm27970 misc_RNA Interval_124128 chr5 38531184 38531993 + 0 NA intron (ENSMUSG00000005103.12, intron 11 of 14) protein_coding-intron (ENSMUSG00000005103.12, intron 11 of 14) -14870 ENSMUSG00000064419.1 ENSMUSG00000064419 ENSMUST00000082485 Gm22249 snRNA Interval_87741 chr19 55554855 55555058 + 0 NA intron (ENSMUSG00000024983.10, intron 8 of 8) protein_coding-intron (ENSMUSG00000024983.10, intron 7 of 7) -187308 ENSMUSG00000024985.20 ENSMUSG00000024985 ENSMUST00000148666 Tcf7l2 protein_coding Interval_51869 chr14 33189518 33190922 + 0 NA Intergenic Intergenic -4712 ENSMUSG00000051506.17 ENSMUSG00000051506 ENSMUST00000159606 Wdfy4 protein_coding Interval_6816 chr1 119849126 119849853 + 0 NA Intergenic Intergenic -25292 ENSMUSG00000100042.1 ENSMUSG00000100042 ENSMUST00000185404 Gm29658 processed_pseudogene Interval_28253 chr11 74705403 74705645 + 0 NA intron (ENSMUSG00000020745.15, intron 1 of 9) protein_coding-intron (ENSMUSG00000020745.15, intron 1 of 10) 18794 ENSMUSG00000020745.15 ENSMUSG00000020745 ENSMUST00000155493 Pafah1b1 protein_coding Interval_13736 chr10 21592998 21593471 + 0 NA promoter-TSS (ENSMUSG00000050844.5) protein_coding-promoter-TSS (ENSMUSG00000050844.5) -23086 ENSMUSG00000050844.5 ENSMUSG00000050844 ENSMUST00000186635 1700020N01Rik protein_coding Interval_62039 chr15 86054001 86054323 + 0 NA Intergenic Intergenic -20571 ENSMUSG00000035900.18 ENSMUSG00000035900 ENSMUST00000147286 Gramd4 protein_coding Interval_15321 chr10 44482918 44483797 + 0 NA intron (ENSMUSG00000038151.13, intron 1 of 3) protein_coding-intron (ENSMUSG00000038151.13, intron 1 of 3) -26147 ENSMUSG00000038151.13 ENSMUSG00000038151 ENSMUST00000167340 Prdm1 protein_coding Interval_28190 chr11 74060437 74061213 + 0 NA Intergenic Intergenic -4210 ENSMUSG00000043692.6 ENSMUSG00000043692 ENSMUST00000059440 Olfr399 protein_coding Interval_168184 chr9 77816499 77817329 + 0 NA Intergenic Intergenic -7121 ENSMUSG00000111253.1 ENSMUSG00000111253 ENSMUST00000217012 Gm34654 lincRNA Interval_85466 chr19 26759603 26760205 + 0 NA exon (ENSMUSG00000024921.17, exon 29 of 33) protein_coding-exon (ENSMUSG00000024921.17, exon 29 of 33) 11502 ENSMUSG00000024921.17 ENSMUSG00000024921 ENSMUST00000208984 Smarca2 protein_coding Interval_113454 chr4 55092364 55092563 + 0 NA Intergenic Intergenic -24100 ENSMUSG00000082704.1 ENSMUSG00000082704 ENSMUST00000120116 Gm12515 processed_pseudogene Interval_152174 chr7 130394540 130395437 + 0 NA intron (ENSMUSG00000030850.17, intron 12 of 12) protein_coding-intron (ENSMUSG00000030850.17, intron 11 of 11) -40626 ENSMUSG00000082988.3 ENSMUSG00000082988 ENSMUST00000121836 Gm5903 processed_pseudogene Interval_130692 chr5 129786767 129787698 + 0 NA promoter-TSS (ENSMUSG00000029447.11) protein_coding-promoter-TSS (ENSMUSG00000029447.11) -25 ENSMUSG00000029446.14 ENSMUSG00000029446 ENSMUST00000202374 Psph protein_coding Interval_47071 chr13 75308307 75308516 + 0 NA Intergenic Intergenic 109197 ENSMUSG00000113264.1 ENSMUSG00000113264 ENSMUST00000220533 Gm19095 processed_pseudogene Interval_2995 chr1 51946052 51946412 + 0 NA Intergenic Intergenic -4971 ENSMUSG00000072324.4 ENSMUSG00000072324 ENSMUST00000097103 Gm8420 processed_pseudogene Interval_98611 chr2 153573175 153573382 + 0 NA Intergenic Intergenic 59453 ENSMUSG00000056941.17 ENSMUSG00000056941 ENSMUST00000109782 Commd7 protein_coding Interval_120207 chr4 144292355 144292573 + 0 NA Intergenic Intergenic -4228 ENSMUSG00000095960.1 ENSMUSG00000095960 ENSMUST00000117343 Gm13120 processed_pseudogene Interval_13222 chr10 13184678 13185342 + 0 NA intron (ENSMUSG00000019814.5, intron 4 of 5) protein_coding-intron (ENSMUSG00000019814.5, intron 4 of 10) -6987 ENSMUSG00000019815.7 ENSMUSG00000019815 ENSMUST00000219970 Zc2hc1b protein_coding Interval_115434 chr4 98903358 98903750 + 0 NA Intergenic Intergenic -20410 ENSMUSG00000028560.11 ENSMUSG00000028560 ENSMUST00000125104 Usp1 protein_coding Interval_161992 chr8 124295188 124295408 + 0 NA promoter-TSS (ENSMUSG00000089704.9) protein_coding-promoter-TSS (ENSMUSG00000089704.9) -68 ENSMUSG00000089704.9 ENSMUSG00000089704 ENSMUST00000147911 Galnt2 protein_coding Interval_91713 chr2 48586977 48588151 + 0 NA Intergenic Intergenic -130319 ENSMUSG00000086353.1 ENSMUSG00000086353 ENSMUST00000127672 Gm13481 lincRNA Interval_95779 chr2 116106410 116107279 + 0 NA Intergenic Intergenic -30748 ENSMUSG00000103562.1 ENSMUSG00000103562 ENSMUST00000195368 2810405F15Rik TEC Interval_107103 chr3 103573246 103574360 + 0 NA Intergenic Intergenic -1575 ENSMUSG00000027849.19 ENSMUSG00000027849 ENSMUST00000118563 Syt6 protein_coding Interval_135327 chr6 38353652 38355548 + 0 NA promoter-TSS (ENSMUSG00000029826.14) protein_coding-promoter-TSS (ENSMUSG00000029826.14) -327 ENSMUSG00000029826.14 ENSMUSG00000029826 ENSMUST00000114898 Zc3hav1 protein_coding Interval_4356 chr1 72944684 72946470 + 0 NA Intergenic Intergenic 70332 ENSMUSG00000026182.6 ENSMUSG00000026182 ENSMUST00000027374 Tnp1 protein_coding Interval_44416 chr13 44721692 44722910 + 0 NA Intergenic Intergenic -9069 ENSMUSG00000038518.15 ENSMUSG00000038518 ENSMUST00000173003 Jarid2 protein_coding Interval_92485 chr2 60062855 60063066 + 0 NA intron (ENSMUSG00000026987.16, intron 1 of 34) protein_coding-intron (ENSMUSG00000026987.16, intron 1 of 34) 25819 ENSMUSG00000085975.1 ENSMUSG00000085975 ENSMUST00000153675 Gm13572 lincRNA Interval_1714 chr1 32221133 32221373 + 0 NA intron (ENSMUSG00000026058.11, intron 1 of 1) protein_coding-intron (ENSMUSG00000026058.11, intron 1 of 8) -8014 ENSMUSG00000064688.1 ENSMUSG00000064688 ENSMUST00000082754 Gm25814 snRNA Interval_7257 chr1 128281636 128281957 + 0 NA Intergenic Intergenic 10468 ENSMUSG00000026354.8 ENSMUSG00000026354 ENSMUST00000162067 Lct protein_coding Interval_43249 chr13 27133900 27134098 + 0 NA Intergenic Intergenic 12257 ENSMUSG00000062737.13 ENSMUSG00000062737 ENSMUST00000164964 Prl3d2 protein_coding Interval_100351 chr2 168580258 168580649 + 0 NA intron (ENSMUSG00000027544.16, intron 1 of 6) protein_coding-intron (ENSMUSG00000027544.16, intron 1 of 6) 21202 ENSMUSG00000027544.16 ENSMUSG00000027544 ENSMUST00000138546 Nfatc2 protein_coding Interval_81664 chr18 62987814 62988520 + 0 NA promoter-TSS (ENSMUSG00000024581.13) protein_coding-promoter-TSS (ENSMUSG00000024581.13) 10320 ENSMUSG00000024581.13 ENSMUSG00000024581 ENSMUST00000236914 Napg protein_coding Interval_149265 chr7 96796248 96797730 + 0 NA intron (ENSMUSG00000048078.16, intron 1 of 5) protein_coding-intron (ENSMUSG00000048078.16, intron 16 of 32) 348 ENSMUSG00000048078.16 ENSMUSG00000048078 ENSMUST00000147659 Tenm4 protein_coding Interval_61070 chr15 79062447 79063275 + 0 NA promoter-TSS (ENSMUSG00000033055.12) protein_coding-promoter-TSS (ENSMUSG00000033055.12) -239 ENSMUSG00000033055.12 ENSMUSG00000033055 ENSMUST00000128631 Ankrd54 protein_coding Interval_99097 chr2 157178780 157179000 + 0 NA intron (ENSMUSG00000027641.13, intron 11 of 15) protein_coding-intron (ENSMUSG00000027641.13, intron 11 of 21) 10070 ENSMUSG00000084113.1 ENSMUSG00000084113 ENSMUST00000121195 Gm14277 processed_pseudogene Interval_144966 chr7 29155379 29156383 + 0 NA promoter-TSS (ENSMUSG00000030590.15) protein_coding-promoter-TSS (ENSMUSG00000030590.15) 201 ENSMUSG00000099098.4 ENSMUSG00000099098 ENSMUST00000184073 1110035H17Rik antisense Interval_170212 chr9 106234945 106235657 + 0 NA TTS (ENSMUSG00000032786.16) protein_coding-TTS (ENSMUSG00000032786.16) 12569 ENSMUSG00000032786.16 ENSMUSG00000032786 ENSMUST00000215222 Alas1 protein_coding Interval_88190 chr19 60545483 60546017 + 0 NA exon (ENSMUSG00000033417.16, exon 1 of 2) protein_coding-exon (ENSMUSG00000033417.16, exon 1 of 2) -8201 ENSMUSG00000033417.16 ENSMUSG00000033417 ENSMUST00000237682 Cacul1 protein_coding Interval_54980 chr14 76652422 76653458 + 0 NA Intergenic Intergenic -16076 ENSMUSG00000115143.1 ENSMUSG00000115143 ENSMUST00000227724 Fkbp1a-ps1 processed_pseudogene Interval_20152 chr10 115294092 115295363 + 0 NA intron (ENSMUSG00000020132.10, intron 6 of 6) protein_coding-intron (ENSMUSG00000020132.10, intron 6 of 6) 20867 ENSMUSG00000020132.10 ENSMUSG00000020132 ENSMUST00000218831 Rab21 protein_coding Interval_18987 chr10 93592342 93592773 + 0 NA intron (ENSMUSG00000097407.1, intron 1 of 3) lincRNA-intron (ENSMUSG00000097407.1, intron 1 of 3) -2851 ENSMUSG00000020018.6 ENSMUSG00000020018 ENSMUST00000020203 Snrpf protein_coding Interval_74084 chr17 46501801 46502469 + 0 NA exon (ENSMUSG00000040327.16, exon 38 of 42) protein_coding-exon (ENSMUSG00000040327.16, exon 38 of 42) -1064 ENSMUSG00000040327.16 ENSMUSG00000040327 ENSMUST00000183163 Cul9 protein_coding Interval_167811 chr9 72825425 72826851 + 0 NA intron (ENSMUSG00000036030.9, intron 2 of 19) protein_coding-intron (ENSMUSG00000036030.9, intron 2 of 19) 1425 ENSMUSG00000098471.1 ENSMUSG00000098471 ENSMUST00000183677 Gm27203 processed_pseudogene Interval_5346 chr1 87766194 87766690 + 0 NA promoter-TSS (ENSMUSG00000026289.15) protein_coding-promoter-TSS (ENSMUSG00000026289.15) 10354 ENSMUSG00000026289.15 ENSMUSG00000026289 ENSMUST00000127884 Atg16l1 protein_coding Interval_30296 chr11 93144482 93144970 + 0 NA intron (ENSMUSG00000056158.14, intron 1 of 8) protein_coding-intron (ENSMUSG00000056158.14, intron 2 of 9) 46698 ENSMUSG00000056158.14 ENSMUSG00000056158 ENSMUST00000107863 Car10 protein_coding Interval_50402 chr14 12515281 12515585 + 0 NA intron (ENSMUSG00000054423.14, intron 11 of 30) protein_coding-intron (ENSMUSG00000054423.14, intron 11 of 28) -87792 ENSMUSG00000084541.1 ENSMUSG00000084541 ENSMUST00000122592 n-R5s45 rRNA Interval_69163 chr16 91062921 91063458 + 0 NA intron (ENSMUSG00000039851.11, intron 1 of 2) protein_coding-intron (ENSMUSG00000039851.11, intron 1 of 2) 18533 ENSMUSG00000085398.1 ENSMUSG00000085398 ENSMUST00000147848 4931406G06Rik antisense Interval_139121 chr6 95519495 95520241 + 0 NA intron (ENSMUSG00000061838.7, intron 9 of 10) protein_coding-intron (ENSMUSG00000061838.7, intron 9 of 10) 137600 ENSMUSG00000061838.7 ENSMUSG00000061838 ENSMUST00000203109 Suclg2 protein_coding Interval_42145 chr13 9153985 9156384 + 0 NA intron (ENSMUSG00000033499.14, intron 11 of 15) protein_coding-intron (ENSMUSG00000033499.14, intron 11 of 16) -14303 ENSMUSG00000099428.1 ENSMUSG00000099428 ENSMUST00000191066 Gm28155 processed_pseudogene Interval_44836 chr13 48988812 48989650 + 0 NA Intergenic Intergenic -21214 ENSMUSG00000038014.7 ENSMUSG00000038014 ENSMUST00000060805 Fam120a protein_coding Interval_69835 chr16 97304380 97305224 + 0 NA Intergenic Intergenic -100467 ENSMUSG00000116686.1 ENSMUSG00000116686 ENSMUST00000232315 Gm49681 processed_pseudogene Interval_89624 chr2 23502077 23502558 + 0 NA Intergenic Intergenic -6543 ENSMUSG00000081519.1 ENSMUSG00000081519 ENSMUST00000117500 Gm13331 processed_pseudogene Interval_53378 chr14 56771947 56772385 + 0 NA intron (ENSMUSG00000021938.12, intron 1 of 7) protein_coding-intron (ENSMUSG00000021938.12, intron 1 of 8) 5761 ENSMUSG00000021938.12 ENSMUSG00000021938 ENSMUST00000168575 Pspc1 protein_coding Interval_155931 chr8 41103262 41104387 + 0 NA intron (ENSMUSG00000045636.16, intron 1 of 1) protein_coding-intron (ENSMUSG00000045636.16, intron 1 of 13) 50714 ENSMUSG00000085672.1 ENSMUSG00000085672 ENSMUST00000125903 Gm16193 antisense Interval_171910 chr9 122457866 122458060 + 0 NA Intergenic Intergenic -19798 ENSMUSG00000111146.1 ENSMUSG00000111146 ENSMUST00000213143 Gm35454 lincRNA Interval_15723 chr10 54760668 54760876 + 0 NA Intergenic Intergenic -47735 ENSMUSG00000088987.1 ENSMUSG00000088987 ENSMUST00000158362 Gm25602 snRNA Interval_24634 chr11 35479802 35480787 + 0 NA intron (ENSMUSG00000056427.10, intron 2 of 3) protein_coding-intron (ENSMUSG00000056427.10, intron 4 of 35) 130225 ENSMUSG00000086311.1 ENSMUSG00000086311 ENSMUST00000124503 Gm12122 sense_intronic Interval_99938 chr2 166012201 166012592 + 0 NA intron (ENSMUSG00000027678.17, intron 1 of 22) protein_coding-intron (ENSMUSG00000027678.17, intron 1 of 22) -19879 ENSMUSG00000087351.1 ENSMUSG00000087351 ENSMUST00000146963 Gm11464 lincRNA Interval_77690 chr17 94319784 94320100 + 0 NA Intergenic Intergenic 8921 ENSMUSG00000077433.1 ENSMUSG00000077433 ENSMUST00000104245 Gm22593 snRNA Interval_38285 chr12 76910159 76911415 + 0 NA TTS (ENSMUSG00000033373.16) protein_coding-TTS (ENSMUSG00000033373.16) 23729 ENSMUSG00000033373.16 ENSMUSG00000033373 ENSMUST00000130605 Fntb protein_coding Interval_155857 chr8 40320905 40321615 + 0 NA intron (ENSMUSG00000039478.15, intron 1 of 14) protein_coding-intron (ENSMUSG00000039478.15, intron 1 of 14) -12929 ENSMUSG00000031603.14 ENSMUSG00000031603 ENSMUST00000118639 Fgf20 protein_coding Interval_121494 chr4 156173067 156173672 + 0 NA exon (ENSMUSG00000041936.18, exon 2 of 6) protein_coding-exon (ENSMUSG00000041936.18, exon 2 of 6) 12738 ENSMUSG00000041936.18 ENSMUSG00000041936 ENSMUST00000144749 Agrn protein_coding Interval_8556 chr1 142035542 142035915 + 0 NA Intergenic Intergenic 420086 ENSMUSG00000099671.2 ENSMUSG00000099671 ENSMUST00000191024 Gm18183 processed_pseudogene Interval_81473 chr18 60981852 60982196 + 0 NA intron (ENSMUSG00000024617.16, intron 5 of 6) protein_coding-intron (ENSMUSG00000024617.16, intron 17 of 18) 23951 ENSMUSG00000098475.1 ENSMUSG00000098475 ENSMUST00000184354 Mir6982 miRNA Interval_116898 chr4 118071362 118072289 + 0 NA intron (ENSMUSG00000028538.12, intron 2 of 11) protein_coding-intron (ENSMUSG00000028538.12, intron 2 of 11) -39943 ENSMUSG00000028538.12 ENSMUSG00000028538 ENSMUST00000126336 St3gal3 protein_coding Interval_158883 chr8 87689870 87691168 + 0 NA intron (ENSMUSG00000045333.15, intron 3 of 5) protein_coding-intron (ENSMUSG00000045333.15, intron 4 of 6) 53862 ENSMUSG00000089301.1 ENSMUSG00000089301 ENSMUST00000158676 Gm24841 misc_RNA Interval_6338 chr1 106036913 106037669 + 0 NA Intergenic Intergenic 33154 ENSMUSG00000038866.15 ENSMUSG00000038866 ENSMUST00000131830 Zcchc2 protein_coding Interval_169116 chr9 92823800 92824140 + 0 NA Intergenic Intergenic -71862 ENSMUSG00000099823.1 ENSMUSG00000099823 ENSMUST00000187280 Gm28054 lincRNA Interval_109645 chr3 145684587 145685429 + 0 NA Intergenic Intergenic 32914 ENSMUSG00000097183.2 ENSMUSG00000097183 ENSMUST00000197148 Gm17501 lincRNA Interval_148826 chr7 89115357 89115732 + 0 NA Intergenic Intergenic 29953 ENSMUSG00000039428.11 ENSMUSG00000039428 ENSMUST00000137723 Tmem135 protein_coding Interval_171065 chr9 114073313 114074034 + 0 NA intron (ENSMUSG00000086596.2, intron 3 of 4) protein_coding-intron (ENSMUSG00000086596.2, intron 3 of 4) 16533 ENSMUSG00000086596.2 ENSMUSG00000086596 ENSMUST00000135338 Susd5 protein_coding Interval_154071 chr8 12467400 12468448 + 0 NA promoter-TSS (ENSMUSG00000109921.1) lincRNA-promoter-TSS (ENSMUSG00000109921.1) -960 ENSMUSG00000109921.1 ENSMUSG00000109921 ENSMUST00000209741 Gm33326 lincRNA Interval_108335 chr3 124288869 124289153 + 0 NA intron (ENSMUSG00000104531.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000104531.1, intron 1 of 2) -3065 ENSMUSG00000090474.3 ENSMUSG00000090474 ENSMUST00000168454 Gm9372 transcribed_processed_pseudogene Interval_10295 chr1 168213736 168214998 + 0 NA intron (ENSMUSG00000052534.15, intron 2 of 7) protein_coding-intron (ENSMUSG00000052534.15, intron 2 of 6) 123304 ENSMUSG00000103780.1 ENSMUSG00000103780 ENSMUST00000192272 Gm37524 TEC Interval_157565 chr8 71456895 71458293 + 0 NA intron (ENSMUSG00000007950.9, intron 2 of 2) protein_coding-intron (ENSMUSG00000007950.9, intron 4 of 4) 6028 ENSMUSG00000007950.9 ENSMUSG00000007950 ENSMUST00000212503 Abhd8 protein_coding Interval_137723 chr6 81759462 81759705 + 0 NA Intergenic Intergenic -44351 ENSMUSG00000107419.1 ENSMUSG00000107419 ENSMUST00000203833 Gm38839 lincRNA Interval_42551 chr13 15251635 15252524 + 0 NA Intergenic Intergenic -123545 ENSMUSG00000113410.1 ENSMUSG00000113410 ENSMUST00000222267 Gm20043 lincRNA Interval_126286 chr5 86079775 86080725 + 0 NA TTS (ENSMUSG00000064859.1) snRNA-TTS (ENSMUSG00000064859.1) 484 ENSMUSG00000064859.1 ENSMUSG00000064859 ENSMUST00000082925 Gm24524 snRNA Interval_162173 chr8 125689615 125689855 + 0 NA Intergenic Intergenic 19917 ENSMUSG00000050930.5 ENSMUSG00000050930 ENSMUST00000053078 Map10 protein_coding Interval_52598 chr14 47799453 47800037 + 0 NA TTS (ENSMUSG00000115046.1) lincRNA-TTS (ENSMUSG00000115046.1) 1720 ENSMUSG00000115046.1 ENSMUSG00000115046 ENSMUST00000228127 Gm49302 lincRNA Interval_82847 chr18 77458764 77459595 + 0 NA exon (ENSMUSG00000025427.15, exon 8 of 8) protein_coding-exon (ENSMUSG00000025427.15, exon 8 of 8) 7969 ENSMUSG00000025427.15 ENSMUSG00000025427 ENSMUST00000182146 Rnf165 protein_coding Interval_94269 chr2 87258533 87258843 + 0 NA Intergenic Intergenic -1784 ENSMUSG00000098776.1 ENSMUSG00000098776 ENSMUST00000183480 Gm27438 miRNA Interval_117070 chr4 119359189 119359967 + 0 NA exon (ENSMUSG00000028637.16, exon 4 of 7) protein_coding-exon (ENSMUSG00000028637.16, exon 4 of 7) 14175 ENSMUSG00000028637.16 ENSMUSG00000028637 ENSMUST00000238559 Ccdc30 protein_coding Interval_171370 chr9 117115454 117115894 + 0 NA intron (ENSMUSG00000039607.17, intron 1 of 13) protein_coding-intron (ENSMUSG00000039607.17, intron 1 of 12) 50147 ENSMUSG00000092516.1 ENSMUSG00000092516 ENSMUST00000174520 Gm20397 processed_pseudogene Interval_50568 chr14 15724232 15724487 + 0 NA intron (ENSMUSG00000114794.1, intron 3 of 3) lincRNA-intron (ENSMUSG00000114794.1, intron 3 of 3) -49330 ENSMUSG00000114586.1 ENSMUSG00000114586 ENSMUST00000225565 Gm31804 lincRNA Interval_112829 chr4 45341522 45342940 + 0 NA promoter-TSS (ENSMUSG00000035572.16) protein_coding-promoter-TSS (ENSMUSG00000035572.16) 130 ENSMUSG00000035572.16 ENSMUSG00000035572 ENSMUST00000153803 Dcaf10 protein_coding Interval_96647 chr2 126772135 126772564 + 0 NA intron (ENSMUSG00000027364.14, intron 5 of 8) protein_coding-intron (ENSMUSG00000027364.14, intron 5 of 6) 11109 ENSMUSG00000027364.14 ENSMUSG00000027364 ENSMUST00000151140 Usp50 protein_coding Interval_174003 chrX 128602177 128602400 + 0 NA Intergenic Intergenic -79479 ENSMUSG00000080419.1 ENSMUSG00000080419 ENSMUST00000116769 Gm26475 miRNA Interval_57210 chr15 7809853 7811804 + 0 NA promoter-TSS (ENSMUSG00000022144.4) protein_coding-promoter-TSS (ENSMUSG00000022144.4) -18 ENSMUSG00000022144.4 ENSMUSG00000022144 ENSMUST00000022744 Gdnf protein_coding Interval_122223 chr5 20281344 20281552 + 0 NA intron (ENSMUSG00000040003.18, intron 2 of 15) protein_coding-intron (ENSMUSG00000040003.18, intron 6 of 22) 17107 ENSMUSG00000087768.1 ENSMUSG00000087768 ENSMUST00000157143 Gm22755 snRNA Interval_144279 chr7 24236464 24238161 + 0 NA promoter-TSS (ENSMUSG00000074283.5) protein_coding-promoter-TSS (ENSMUSG00000074283.5) -87 ENSMUSG00000074283.5 ENSMUSG00000074283 ENSMUST00000037448 Zfp109 protein_coding Interval_22580 chr11 11913510 11915081 + 0 NA promoter-TSS (ENSMUSG00000087990.2) scaRNA-promoter-TSS (ENSMUSG00000087990.2) -547 ENSMUSG00000087990.2 ENSMUSG00000087990 ENSMUST00000157365 Gm25058 scaRNA Interval_9033 chr1 153198623 153200091 + 0 NA Intergenic Intergenic 39969 ENSMUSG00000026478.14 ENSMUSG00000026478 ENSMUST00000159251 Lamc1 protein_coding Interval_62791 chr15 97002434 97003439 + 0 NA intron (ENSMUSG00000022464.14, intron 12 of 14) protein_coding-intron (ENSMUSG00000022464.14, intron 13 of 15) 17015 ENSMUSG00000022464.14 ENSMUSG00000022464 ENSMUST00000230907 Slc38a4 protein_coding Interval_15827 chr10 57615298 57615635 + 0 NA Intergenic Intergenic 14073 ENSMUSG00000093406.1 ENSMUSG00000093406 ENSMUST00000177147 Rpl48-ps1 processed_pseudogene Interval_64394 chr16 11072799 11073672 + 0 NA TTS (ENSMUSG00000037972.7) protein_coding-TTS (ENSMUSG00000037972.7) -7113 ENSMUSG00000022500.15 ENSMUSG00000022500 ENSMUST00000230709 Litaf protein_coding Interval_68058 chr16 64794489 64794759 + 0 NA intron (ENSMUSG00000047141.5, intron 3 of 8) protein_coding-intron (ENSMUSG00000047141.5, intron 3 of 8) -27968 ENSMUSG00000059920.9 ENSMUSG00000059920 ENSMUST00000076991 4930453N24Rik protein_coding Interval_67760 chr16 56909681 56910560 + 0 NA promoter-TSS (ENSMUSG00000083467.1) processed_pseudogene-promoter-TSS (ENSMUSG00000083467.1) -67 ENSMUSG00000083467.1 ENSMUSG00000083467 ENSMUST00000122099 Gm15840 processed_pseudogene Interval_46914 chr13 73368549 73369512 + 0 NA Intergenic Intergenic -21646 ENSMUSG00000113346.2 ENSMUSG00000113346 ENSMUST00000223470 Eprn lincRNA Interval_79065 chr18 24280381 24280582 + 0 NA intron (ENSMUSG00000000420.15, intron 10 of 11) protein_coding-intron (ENSMUSG00000000420.15, intron 11 of 12) 23103 ENSMUSG00000091363.1 ENSMUSG00000091363 ENSMUST00000163185 Gm7701 processed_pseudogene Interval_13766 chr10 21905858 21906163 + 0 NA intron (ENSMUSG00000019970.15, intron 1 of 13) protein_coding-intron (ENSMUSG00000019970.15, intron 1 of 13) -27118 ENSMUSG00000080607.1 ENSMUSG00000080607 ENSMUST00000116957 Gm23839 snoRNA Interval_172610 chrX 38334851 38335126 + 0 NA exon (ENSMUSG00000016327.9, exon 8 of 8) protein_coding-exon (ENSMUSG00000016327.9, exon 8 of 8) 18804 ENSMUSG00000016327.9 ENSMUSG00000016327 ENSMUST00000115134 Atp1b4 protein_coding Interval_118076 chr4 128795178 128796248 + 0 NA promoter-TSS (ENSMUSG00000028799.15) protein_coding-promoter-TSS (ENSMUSG00000028799.15) 10332 ENSMUSG00000028799.15 ENSMUSG00000028799 ENSMUST00000138371 Zfp362 protein_coding Interval_112657 chr4 43875018 43876327 + 0 NA exon (ENSMUSG00000028476.13, exon 1 of 21) protein_coding-exon (ENSMUSG00000028476.13, exon 1 of 21) 24107 ENSMUSG00000071000.3 ENSMUSG00000071000 ENSMUST00000095108 Olfr155 protein_coding Interval_125185 chr5 65165734 65167267 + 0 NA intron (ENSMUSG00000054920.12, intron 9 of 9) protein_coding-intron (ENSMUSG00000054920.12, intron 10 of 10) 30198 ENSMUSG00000087748.1 ENSMUSG00000087748 ENSMUST00000157123 Gm25154 rRNA Interval_7915 chr1 134560068 134561540 + 0 NA intron (ENSMUSG00000042207.17, intron 1 of 25) protein_coding-intron (ENSMUSG00000042207.17, intron 1 of 26) -13854 ENSMUSG00000046367.10 ENSMUSG00000046367 ENSMUST00000185836 Mgat4e protein_coding Interval_113582 chr4 56845195 56846276 + 0 NA intron (ENSMUSG00000038816.14, intron 2 of 11) protein_coding-intron (ENSMUSG00000038816.14, intron 2 of 18) -7151 ENSMUSG00000038816.14 ENSMUSG00000038816 ENSMUST00000132764 Ctnnal1 protein_coding Interval_75196 chr17 64570207 64570492 + 0 NA Intergenic Intergenic -14689 ENSMUSG00000073377.9 ENSMUSG00000073377 ENSMUST00000168379 AU016765 lincRNA Interval_31110 chr11 98201690 98203594 + 0 NA promoter-TSS (ENSMUSG00000003119.14) protein_coding-promoter-TSS (ENSMUSG00000003119.14) 17276 ENSMUSG00000085897.2 ENSMUSG00000085897 ENSMUST00000121487 Gm11604 processed_pseudogene Interval_100228 chr2 167788624 167789030 + 0 NA Intergenic Intergenic 6774 ENSMUSG00000087624.1 ENSMUSG00000087624 ENSMUST00000124850 9230111E07Rik lincRNA Interval_41075 chr12 111007388 111009323 + 0 NA intron (ENSMUSG00000113056.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000113056.1, intron 1 of 2) 10047 ENSMUSG00000113597.1 ENSMUSG00000113597 ENSMUST00000223165 Gm48631 TEC Interval_20096 chr10 114455742 114456180 + 0 NA intron (ENSMUSG00000050663.8, intron 12 of 18) protein_coding-intron (ENSMUSG00000050663.8, intron 12 of 18) 105487 ENSMUSG00000104335.1 ENSMUSG00000104335 ENSMUST00000192301 Gm38281 TEC Interval_104383 chr3 64943442 64943869 + 0 NA Intergenic Intergenic -33763 ENSMUSG00000027827.17 ENSMUSG00000027827 ENSMUST00000161956 Kcnab1 protein_coding Interval_62031 chr15 86004197 86006206 + 0 NA intron (ENSMUSG00000016028.11, intron 1 of 34) protein_coding-intron (ENSMUSG00000016028.11, intron 1 of 34) -69532 ENSMUSG00000035900.18 ENSMUSG00000035900 ENSMUST00000147286 Gramd4 protein_coding Interval_167318 chr9 67315023 67315613 + 0 NA intron (ENSMUSG00000052698.15, intron 5 of 31) protein_coding-intron (ENSMUSG00000052698.15, intron 31 of 57) 15329 ENSMUSG00000052698.15 ENSMUSG00000052698 ENSMUST00000213584 Tln2 protein_coding Interval_76948 chr17 85116577 85117100 + 0 NA intron (ENSMUSG00000071037.6, intron 3 of 10) protein_coding-intron (ENSMUSG00000071037.6, intron 3 of 10) 26232 ENSMUSG00000071037.6 ENSMUSG00000071037 ENSMUST00000234501 Camkmt protein_coding Interval_107373 chr3 106970480 106971010 + 0 NA intron (ENSMUSG00000098108.7, intron 2 of 5) antisense-intron (ENSMUSG00000098108.7, intron 2 of 5) -65424 ENSMUSG00000047959.4 ENSMUSG00000047959 ENSMUST00000052718 Kcna3 protein_coding Interval_76377 chr17 79728067 79729557 + 0 NA Intergenic Intergenic -5062 ENSMUSG00000117426.1 ENSMUSG00000117426 ENSMUST00000234743 Gm33055 lincRNA Interval_18509 chr10 86813962 86815406 + 0 NA intron (ENSMUSG00000112743.1, intron 4 of 13) protein_coding-intron (ENSMUSG00000054027.8, intron 4 of 13) -10419 ENSMUSG00000054027.8 ENSMUSG00000054027 ENSMUST00000218792 Nt5dc3 protein_coding Interval_26559 chr11 58889746 58890001 + 0 NA exon (ENSMUSG00000037001.10, exon 5 of 5) protein_coding-exon (ENSMUSG00000037001.10, exon 5 of 5) 163 ENSMUSG00000087654.1 ENSMUSG00000087654 ENSMUST00000132394 Gm12256 antisense Interval_82879 chr18 78167122 78167586 + 0 NA intron (ENSMUSG00000024552.16, intron 12 of 21) protein_coding-intron (ENSMUSG00000024552.16, intron 9 of 18) -25235 ENSMUSG00000059336.14 ENSMUSG00000059336 ENSMUST00000160639 Slc14a1 protein_coding Interval_91053 chr2 34710697 34710893 + 0 NA intron (ENSMUSG00000026867.18, intron 1 of 1) protein_coding-intron (ENSMUSG00000026867.18, intron 10 of 25) -9696 ENSMUSG00000026867.18 ENSMUSG00000026867 ENSMUST00000142436 Gapvd1 protein_coding Interval_26614 chr11 59241965 59242173 + 0 NA Intergenic Intergenic -13907 ENSMUSG00000048076.14 ENSMUSG00000048076 ENSMUST00000061242 Arf1 protein_coding Interval_66036 chr16 31088603 31090202 + 0 NA Intergenic Intergenic 15481 ENSMUSG00000049076.12 ENSMUSG00000049076 ENSMUST00000239132 Acap2 protein_coding Interval_155391 chr8 33178820 33179175 + 0 NA Intergenic Intergenic 13299 ENSMUSG00000083557.1 ENSMUSG00000083557 ENSMUST00000119347 Gm6877 processed_pseudogene Interval_132425 chr5 144855693 144856370 + 0 NA exon (ENSMUSG00000045482.16, exon 1 of 2) protein_coding-exon (ENSMUSG00000045482.16, exon 1 of 2) 40785 ENSMUSG00000098822.1 ENSMUSG00000098822 ENSMUST00000183852 Mir7039 miRNA Interval_31072 chr11 97987459 97989359 + 0 NA Intergenic Intergenic -1976 ENSMUSG00000017417.14 ENSMUSG00000017417 ENSMUST00000107564 Plxdc1 protein_coding Interval_137528 chr6 72898425 72901825 + 0 NA promoter-TSS (ENSMUSG00000055239.10) protein_coding-promoter-TSS (ENSMUSG00000055239.10) -422 ENSMUSG00000055239.10 ENSMUSG00000055239 ENSMUST00000204708 Kcmf1 protein_coding Interval_123159 chr5 30192157 30192572 + 0 NA Intergenic Intergenic 12223 ENSMUSG00000067642.11 ENSMUSG00000067642 ENSMUST00000135322 Adgrf3 protein_coding Interval_98422 chr2 152243489 152244734 + 0 NA intron (ENSMUSG00000074698.10, intron 1 of 3) protein_coding-intron (ENSMUSG00000074698.10, intron 1 of 12) 17198 ENSMUSG00000074698.10 ENSMUSG00000074698 ENSMUST00000141597 Csnk2a1 protein_coding Interval_78897 chr18 21254396 21254774 + 0 NA intron (ENSMUSG00000042680.8, intron 1 of 4) protein_coding-intron (ENSMUSG00000042680.8, intron 1 of 5) 45538 ENSMUSG00000042680.8 ENSMUSG00000042680 ENSMUST00000234115 Garem1 protein_coding Interval_92798 chr2 65497184 65497966 + 0 NA TTS (ENSMUSG00000057182.15) protein_coding-TTS (ENSMUSG00000057182.15) -11690 ENSMUSG00000086701.1 ENSMUSG00000086701 ENSMUST00000145994 Gm13595 antisense Interval_42097 chr13 8744146 8745778 + 0 NA intron (ENSMUSG00000052551.16, intron 8 of 10) protein_coding-intron (ENSMUSG00000052551.16, intron 8 of 9) 53440 ENSMUSG00000113391.1 ENSMUSG00000113391 ENSMUST00000221553 Gm48327 TEC Interval_155990 chr8 41524252 41524729 + 0 NA Intergenic Intergenic 85179 ENSMUSG00000098149.1 ENSMUSG00000098149 ENSMUST00000183246 Gapdh-ps14 processed_pseudogene Interval_95265 chr2 105372498 105372977 + 0 NA intron (ENSMUSG00000055312.2, intron 2 of 2) protein_coding-intron (ENSMUSG00000055312.2, intron 3 of 3) 22611 ENSMUSG00000005973.6 ENSMUSG00000005973 ENSMUST00000127019 Rcn1 protein_coding Interval_103858 chr3 53735078 53735415 + 0 NA promoter-TSS (ENSMUSG00000105444.1) TEC-promoter-TSS (ENSMUSG00000105444.1) -979 ENSMUSG00000105444.1 ENSMUSG00000105444 ENSMUST00000197107 Gm10727 TEC Interval_62937 chr15 98017835 98018382 + 0 NA Intergenic Intergenic -13617 ENSMUSG00000022483.17 ENSMUSG00000022483 ENSMUST00000230148 Col2a1 protein_coding Interval_87728 chr19 55462429 55463351 + 0 NA intron (ENSMUSG00000024983.10, intron 5 of 7) protein_coding-intron (ENSMUSG00000024983.10, intron 5 of 7) 146563 ENSMUSG00000024983.10 ENSMUSG00000024983 ENSMUST00000224396 Vti1a protein_coding Interval_71242 chr17 21523831 21524194 + 0 NA intron (ENSMUSG00000117037.1, intron 2 of 3) transcribed_processed_pseudogene-intron (ENSMUSG00000117037.1, intron 2 of 3) -6268 ENSMUSG00000117037.1 ENSMUSG00000117037 ENSMUST00000233488 Gm50433 transcribed_processed_pseudogene Interval_61239 chr15 80158876 80160380 + 0 NA intron (ENSMUSG00000022414.8, intron 10 of 10) protein_coding-intron (ENSMUSG00000022414.8, intron 10 of 10) -14093 ENSMUSG00000042428.6 ENSMUSG00000042428 ENSMUST00000044970 Mgat3 protein_coding Interval_95975 chr2 118861611 118862446 + 0 NA promoter-TSS (ENSMUSG00000027332.11) protein_coding-promoter-TSS (ENSMUSG00000027332.11) -14405 ENSMUSG00000027332.11 ENSMUSG00000027332 ENSMUST00000154104 Ivd protein_coding Interval_79995 chr18 36534574 36535422 + 0 NA exon (ENSMUSG00000024485.16, exon 12 of 12) protein_coding-exon (ENSMUSG00000024485.16, exon 12 of 12) 6847 ENSMUSG00000024485.16 ENSMUSG00000024485 ENSMUST00000235382 Slc4a9 protein_coding Interval_72002 chr17 27526657 27526863 + 0 NA Intergenic Intergenic -3307 ENSMUSG00000082741.2 ENSMUSG00000082741 ENSMUST00000119573 Gm9703 processed_pseudogene Interval_138212 chr6 86335463 86336590 + 0 NA Intergenic Intergenic 1995 ENSMUSG00000072940.5 ENSMUSG00000072940 ENSMUST00000119024 Gm10443 processed_pseudogene Interval_5749 chr1 91427933 91429069 + 0 NA intron (ENSMUSG00000055866.9, intron 17 of 22) protein_coding-intron (ENSMUSG00000055866.9, intron 17 of 22) -15293 ENSMUSG00000067071.8 ENSMUSG00000067071 ENSMUST00000150520 Hes6 protein_coding Interval_19170 chr10 95275598 95275960 + 0 NA intron (ENSMUSG00000045867.10, intron 2 of 2) protein_coding-intron (ENSMUSG00000045867.10, intron 2 of 2) 39074 ENSMUSG00000112744.1 ENSMUSG00000112744 ENSMUST00000219461 Gm48880 TEC Interval_81936 chr18 66017303 66017814 + 0 NA intron (ENSMUSG00000041891.16, intron 1 of 7) protein_coding-intron (ENSMUSG00000041891.16, intron 1 of 7) -14919 ENSMUSG00000041891.16 ENSMUSG00000041891 ENSMUST00000236070 Lman1 protein_coding Interval_119498 chr4 137945404 137945652 + 0 NA intron (ENSMUSG00000057530.14, intron 10 of 19) protein_coding-intron (ENSMUSG00000057530.14, intron 10 of 19) 32057 ENSMUSG00000057530.14 ENSMUSG00000057530 ENSMUST00000129607 Ece1 protein_coding Interval_28626 chr11 77381453 77381627 + 0 NA intron (ENSMUSG00000037926.15, intron 1 of 13) protein_coding-intron (ENSMUSG00000037926.15, intron 2 of 14) 33258 ENSMUSG00000037926.15 ENSMUSG00000037926 ENSMUST00000180545 Ssh2 protein_coding Interval_101355 chr2 180731950 180732418 + 0 NA exon (ENSMUSG00000023393.15, exon 2 of 5) protein_coding-exon (ENSMUSG00000023393.15, exon 2 of 5) -4234 ENSMUSG00000023393.15 ENSMUSG00000023393 ENSMUST00000140955 Slc17a9 protein_coding Interval_93148 chr2 70628303 70630177 + 0 NA Intergenic Intergenic -10364 ENSMUSG00000086699.3 ENSMUSG00000086699 ENSMUST00000153501 Gm16510 processed_pseudogene Interval_147566 chr7 68302556 68303216 + 0 NA intron (ENSMUSG00000074071.11, intron 2 of 8) protein_coding-intron (ENSMUSG00000074071.11, intron 2 of 8) 14146 ENSMUSG00000109453.1 ENSMUSG00000109453 ENSMUST00000207912 4930405G09Rik TEC Interval_95771 chr2 116059646 116061638 + 0 NA intron (ENSMUSG00000027210.20, intron 2 of 5) protein_coding-intron (ENSMUSG00000027210.20, intron 4 of 11) 6802 ENSMUSG00000086328.1 ENSMUSG00000086328 ENSMUST00000140185 2700033N17Rik lincRNA Interval_34280 chr11 121947923 121948742 + 0 NA Intergenic Intergenic 22353 ENSMUSG00000082831.1 ENSMUSG00000082831 ENSMUST00000122407 Gm12591 unprocessed_pseudogene Interval_32204 chr11 106134350 106135924 + 0 NA intron (ENSMUSG00000020700.11, intron 6 of 15) protein_coding-intron (ENSMUSG00000020700.11, intron 6 of 15) -7786 ENSMUSG00000085229.1 ENSMUSG00000085229 ENSMUST00000140380 Gm11672 antisense Interval_24308 chr11 32243195 32244061 + 0 NA intron (ENSMUSG00000020289.15, intron 2 of 3) protein_coding-intron (ENSMUSG00000020289.15, intron 6 of 12) 17098 ENSMUSG00000020287.15 ENSMUSG00000020287 ENSMUST00000138050 Mpg protein_coding Interval_115984 chr4 106803950 106805476 + 0 NA intron (ENSMUSG00000034853.16, intron 1 of 15) protein_coding-intron (ENSMUSG00000034853.16, intron 1 of 15) -4870 ENSMUSG00000034853.16 ENSMUSG00000034853 ENSMUST00000148688 Acot11 protein_coding Interval_172373 chrX 14632703 14632925 + 0 NA Intergenic Intergenic -163921 ENSMUSG00000084907.1 ENSMUSG00000084907 ENSMUST00000145383 Gm14505 lincRNA Interval_130481 chr5 128232961 128233718 + 0 NA intron (ENSMUSG00000034310.8, intron 2 of 8) protein_coding-intron (ENSMUSG00000034310.8, intron 2 of 8) 8000 ENSMUSG00000104581.1 ENSMUSG00000104581 ENSMUST00000197363 Gm42497 TEC Interval_171280 chr9 116027125 116027320 + 0 NA intron (ENSMUSG00000056880.12, intron 12 of 13) protein_coding-intron (ENSMUSG00000056880.12, intron 13 of 14) 13842 ENSMUSG00000080848.3 ENSMUSG00000080848 ENSMUST00000117563 Gm9385 processed_pseudogene Interval_56861 chr14 122485481 122485752 + 0 NA Intergenic Intergenic -4970 ENSMUSG00000075465.2 ENSMUSG00000075465 ENSMUST00000100294 Gm10837 lincRNA Interval_50164 chr14 8405773 8406407 + 0 NA Intergenic Intergenic -2827 ENSMUSG00000114533.1 ENSMUSG00000114533 ENSMUST00000224382 Gm8416 processed_pseudogene Interval_167651 chr9 71543275 71544057 + 0 NA intron (ENSMUSG00000041361.13, intron 9 of 11) protein_coding-intron (ENSMUSG00000041361.13, intron 10 of 12) 36219 ENSMUSG00000041361.13 ENSMUSG00000041361 ENSMUST00000166112 Myzap protein_coding Interval_59068 chr15 42960728 42960942 + 0 NA Intergenic Intergenic 209991 ENSMUSG00000051920.7 ENSMUSG00000051920 ENSMUST00000226402 Rspo2 protein_coding Interval_87413 chr19 49283416 49283657 + 0 NA Intergenic Intergenic 192863 ENSMUSG00000118111.1 ENSMUSG00000118111 ENSMUST00000236912 Gm50442 lincRNA Interval_69333 chr16 92291935 92292137 + 0 NA promoter-TSS (ENSMUSG00000039672.12) protein_coding-promoter-TSS (ENSMUSG00000039672.12) -3580 ENSMUSG00000039672.12 ENSMUSG00000039672 ENSMUST00000113971 Kcne2 protein_coding Interval_25947 chr11 53017267 53017593 + 0 NA intron (ENSMUSG00000036264.9, intron 4 of 15) protein_coding-intron (ENSMUSG00000036264.9, intron 4 of 15) 102626 ENSMUSG00000087668.1 ENSMUSG00000087668 ENSMUST00000137096 Gm11186 antisense Interval_171664 chr9 120019676 120021618 + 0 NA promoter-TSS (ENSMUSG00000079243.4) protein_coding-promoter-TSS (ENSMUSG00000079243.4) -832 ENSMUSG00000079243.4 ENSMUSG00000079243 ENSMUST00000238557 Xirp1 protein_coding Interval_82129 chr18 67904874 67906488 + 0 NA Intergenic Intergenic -1947 ENSMUSG00000118326.1 ENSMUSG00000118326 ENSMUST00000235570 Gm8887 processed_pseudogene Interval_78079 chr18 7708015 7708485 + 0 NA Intergenic Intergenic -15524 ENSMUSG00000117542.1 ENSMUSG00000117542 ENSMUST00000234387 Gm18763 processed_pseudogene Interval_69049 chr16 90309592 90311022 + 0 NA Intergenic Intergenic -4565 ENSMUSG00000116600.1 ENSMUSG00000116600 ENSMUST00000232142 Gm49707 lincRNA Interval_125911 chr5 75639884 75641321 + 0 NA promoter-TSS (ENSMUSG00000005672.12) protein_coding-promoter-TSS (ENSMUSG00000005672.12) -8492 ENSMUSG00000005672.12 ENSMUSG00000005672 ENSMUST00000201240 Kit protein_coding Interval_34323 chr12 3387665 3388416 + 0 NA intron (ENSMUSG00000020668.10, intron 3 of 8) protein_coding-intron (ENSMUSG00000020668.10, intron 2 of 7) 16026 ENSMUSG00000112308.1 ENSMUSG00000112308 ENSMUST00000217965 Gm48512 antisense Interval_51436 chr14 27493301 27494211 + 0 NA intron (ENSMUSG00000046753.10, intron 8 of 17) protein_coding-intron (ENSMUSG00000046753.10, intron 6 of 15) 4487 ENSMUSG00000088615.1 ENSMUSG00000088615 ENSMUST00000157990 Gm22485 snRNA Interval_31013 chr11 97710575 97712218 + 0 NA promoter-TSS (ENSMUSG00000069744.7) protein_coding-promoter-TSS (ENSMUSG00000069744.7) 7962 ENSMUSG00000069744.7 ENSMUSG00000069744 ENSMUST00000129197 Psmb3 protein_coding Interval_168210 chr9 77971805 77972018 + 0 NA intron (ENSMUSG00000032349.13, intron 3 of 5) protein_coding-intron (ENSMUSG00000032349.13, intron 3 of 7) -20688 ENSMUSG00000111610.1 ENSMUSG00000111610 ENSMUST00000216017 Gm34829 lincRNA Interval_56070 chr14 105298685 105298948 + 0 NA exon (ENSMUSG00000053253.16, exon 3 of 4) protein_coding-exon (ENSMUSG00000053253.16, exon 3 of 4) -5832 ENSMUSG00000086260.1 ENSMUSG00000086260 ENSMUST00000145241 Gm16259 processed_pseudogene Interval_51666 chr14 31221913 31222617 + 0 NA intron (ENSMUSG00000021904.6, intron 7 of 15) protein_coding-intron (ENSMUSG00000021904.6, intron 7 of 15) 4405 ENSMUSG00000021904.6 ENSMUSG00000021904 ENSMUST00000090180 Sema3g protein_coding Interval_21757 chr11 4159829 4161196 + 0 NA promoter-TSS (ENSMUSG00000051427.14) protein_coding-promoter-TSS (ENSMUSG00000051427.14) -294 ENSMUSG00000051427.14 ENSMUSG00000051427 ENSMUST00000132712 Ccdc157 protein_coding Interval_107867 chr3 116408323 116410668 + 0 NA intron (ENSMUSG00000033502.15, intron 2 of 14) protein_coding-intron (ENSMUSG00000033502.15, intron 2 of 15) 19250 ENSMUSG00000033502.15 ENSMUSG00000033502 ENSMUST00000136994 Cdc14a protein_coding Interval_28066 chr11 72595008 72595961 + 0 NA Intergenic Intergenic -11799 ENSMUSG00000020794.13 ENSMUSG00000020794 ENSMUST00000126046 Ube2g1 protein_coding Interval_140462 chr6 118408294 118408720 + 0 NA intron (ENSMUSG00000030138.8, intron 7 of 12) protein_coding-intron (ENSMUSG00000030138.8, intron 8 of 22) 10897 ENSMUSG00000030138.8 ENSMUSG00000030138 ENSMUST00000203444 Bms1 protein_coding Interval_13333 chr10 15387008 15387466 + 0 NA intron (ENSMUSG00000112928.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000112928.1, intron 1 of 1) 87006 ENSMUSG00000112928.1 ENSMUSG00000112928 ENSMUST00000217695 Gm47710 lincRNA Interval_41372 chr12 113139822 113140958 + 0 NA promoter-TSS (ENSMUSG00000006356.10) protein_coding-promoter-TSS (ENSMUSG00000006356.10) -182 ENSMUSG00000006356.10 ENSMUSG00000006356 ENSMUST00000200177 Crip2 protein_coding Interval_116648 chr4 116307281 116308253 + 0 NA TTS (ENSMUSG00000003810.13) protein_coding-TTS (ENSMUSG00000003810.13) 63965 ENSMUSG00000003810.13 ENSMUSG00000003810 ENSMUST00000151347 Mast2 protein_coding Interval_106829 chr3 101152850 101154877 + 0 NA Intergenic Intergenic 53536 ENSMUSG00000082415.1 ENSMUSG00000082415 ENSMUST00000120887 Gm12486 processed_pseudogene Interval_118154 chr4 129263110 129264085 + 0 NA promoter-TSS (ENSMUSG00000087575.7) lincRNA-promoter-TSS (ENSMUSG00000087575.7) 1632 ENSMUSG00000087575.7 ENSMUSG00000087575 ENSMUST00000150171 Gm12976 lincRNA Interval_45734 chr13 57494854 57495514 + 0 NA intron (ENSMUSG00000056222.15, intron 7 of 10) protein_coding-intron (ENSMUSG00000056222.15, intron 5 of 9) 218506 ENSMUSG00000114411.1 ENSMUSG00000114411 ENSMUST00000224461 Gm48176 processed_pseudogene Interval_38560 chr12 80138983 80139184 + 0 NA Intergenic Intergenic -6487 ENSMUSG00000097729.2 ENSMUSG00000097729 ENSMUST00000180643 2310015A10Rik processed_transcript Interval_47605 chr13 89892100 89892397 + 0 NA intron (ENSMUSG00000021615.13, intron 7 of 7) protein_coding-intron (ENSMUSG00000021615.13, intron 7 of 7) 35295 ENSMUSG00000089070.1 ENSMUSG00000089070 ENSMUST00000158445 Gm24498 snRNA Interval_20450 chr10 117684276 117684474 + 0 NA exon (ENSMUSG00000020183.11, exon 9 of 9) protein_coding-exon (ENSMUSG00000020183.11, exon 9 of 9) 8482 ENSMUSG00000020183.11 ENSMUSG00000020183 ENSMUST00000141991 Cpm protein_coding Interval_147926 chr7 75627384 75627655 + 0 NA intron (ENSMUSG00000066406.16, intron 2 of 3) protein_coding-intron (ENSMUSG00000066406.16, intron 8 of 36) -41354 ENSMUSG00000087896.1 ENSMUSG00000087896 ENSMUST00000157271 Gm25282 snRNA Interval_4537 chr1 74858185 74858918 + 0 NA TTS (ENSMUSG00000090071.4) protein_coding-TTS (ENSMUSG00000090071.4) 3617 ENSMUSG00000090071.4 ENSMUSG00000090071 ENSMUST00000160379 Cdk5r2 protein_coding Interval_85972 chr19 34448131 34449790 + 0 NA Intergenic Intergenic -25848 ENSMUSG00000097558.1 ENSMUSG00000097558 ENSMUST00000181307 Gm26902 bidirectional_promoter_lncRNA Interval_96644 chr2 126752124 126752412 + 0 NA intron (ENSMUSG00000027363.15, intron 12 of 16) protein_coding-intron (ENSMUSG00000027363.15, intron 14 of 18) 31190 ENSMUSG00000027364.14 ENSMUSG00000027364 ENSMUST00000151140 Usp50 protein_coding Interval_150011 chr7 104695677 104696083 + 0 NA Intergenic Intergenic -2448 ENSMUSG00000109821.1 ENSMUSG00000109821 ENSMUST00000211165 Gm6593 processed_pseudogene Interval_173426 chrX 93288475 93290136 + 0 NA TTS (ENSMUSG00000035277.15) protein_coding-TTS (ENSMUSG00000035277.15) 2860 ENSMUSG00000035277.15 ENSMUSG00000035277 ENSMUST00000113947 Arx protein_coding Interval_166510 chr9 60256080 60256247 + 0 NA intron (ENSMUSG00000032289.15, intron 5 of 16) protein_coding-intron (ENSMUSG00000032289.15, intron 6 of 17) -77979 ENSMUSG00000111296.1 ENSMUSG00000111296 ENSMUST00000214235 2010001M07Rik antisense Interval_73152 chr17 35120818 35122236 + 0 NA promoter-TSS (ENSMUSG00000024387.13) protein_coding-promoter-TSS (ENSMUSG00000024387.13) -91 ENSMUSG00000024387.13 ENSMUSG00000024387 ENSMUST00000174855 Csnk2b protein_coding Interval_168373 chr9 79779626 79779845 + 0 NA intron (ENSMUSG00000032328.12, intron 1 of 5) protein_coding-intron (ENSMUSG00000032328.12, intron 2 of 6) 13695 ENSMUSG00000032328.12 ENSMUSG00000032328 ENSMUST00000130419 Tmem30a protein_coding Interval_80877 chr18 49816612 49817085 + 0 NA intron (ENSMUSG00000100134.1, intron 1 of 4) lincRNA-intron (ENSMUSG00000100134.1, intron 1 of 4) 1110 ENSMUSG00000100134.1 ENSMUSG00000100134 ENSMUST00000186872 1700065O20Rik lincRNA Interval_63968 chr16 4901443 4901727 + 0 NA intron (ENSMUSG00000022517.17, intron 1 of 16) protein_coding-intron (ENSMUSG00000022517.17, intron 1 of 15) 15199 ENSMUSG00000022517.17 ENSMUSG00000022517 ENSMUST00000230108 Mgrn1 protein_coding Interval_47682 chr13 91197140 91198470 + 0 NA intron (ENSMUSG00000021619.6, intron 2 of 6) protein_coding-intron (ENSMUSG00000021619.6, intron 2 of 7) -22647 ENSMUSG00000091419.2 ENSMUSG00000091419 ENSMUST00000164671 Gm17450 pseudogene Interval_106093 chr3 92966992 92967318 + 0 NA promoter-TSS (ENSMUSG00000074433.4) protein_coding-promoter-TSS (ENSMUSG00000074433.4) 94 ENSMUSG00000074433.4 ENSMUSG00000074433 ENSMUST00000098886 Lce3e protein_coding Interval_143433 chr7 6769945 6771458 + 0 NA TTS (ENSMUSG00000051527.11) protein_coding-TTS (ENSMUSG00000051527.11) 17658 ENSMUSG00000109416.1 ENSMUSG00000109416 ENSMUST00000207613 Gm44863 TEC Interval_76611 chr17 82437280 82437698 + 0 NA Intergenic Intergenic -26670 ENSMUSG00000117438.1 ENSMUSG00000117438 ENSMUST00000234808 Rpsa-ps7 processed_pseudogene Interval_6642 chr1 118481357 118482260 + 0 NA promoter-TSS (ENSMUSG00000064302.13) protein_coding-promoter-TSS (ENSMUSG00000064302.13) -2217 ENSMUSG00000100770.1 ENSMUSG00000100770 ENSMUST00000190678 Gm28466 processed_pseudogene Interval_4600 chr1 75371359 75371613 + 0 NA intron (ENSMUSG00000085653.7, intron 2 of 3) antisense-intron (ENSMUSG00000085653.7, intron 2 of 3) 3526 ENSMUSG00000085653.7 ENSMUSG00000085653 ENSMUST00000130095 Gm15179 antisense Interval_68969 chr16 89817905 89818953 + 0 NA promoter-TSS (ENSMUSG00000002489.16) protein_coding-promoter-TSS (ENSMUSG00000002489.16) -23147 ENSMUSG00000002489.16 ENSMUSG00000002489 ENSMUST00000136760 Tiam1 protein_coding Interval_113963 chr4 61967864 61968817 + 0 NA Intergenic Intergenic -8429 ENSMUSG00000082644.1 ENSMUSG00000082644 ENSMUST00000120390 Mup-ps19 unprocessed_pseudogene Interval_126876 chr5 96431384 96431642 + 0 NA intron (ENSMUSG00000034687.8, intron 2 of 5) protein_coding-intron (ENSMUSG00000034687.8, intron 2 of 73) 26230 ENSMUSG00000106263.1 ENSMUSG00000106263 ENSMUST00000198132 Gm33050 antisense Interval_60752 chr15 76532691 76534758 + 0 NA intron (ENSMUSG00000116376.1, intron 4 of 4) protein_coding-intron (ENSMUSG00000116376.1, intron 6 of 6) 1207 ENSMUSG00000116376.1 ENSMUSG00000116376 ENSMUST00000229074 Tmem249 protein_coding Interval_91468 chr2 39097697 39098662 + 0 NA intron (ENSMUSG00000035236.17, intron 1 of 6) protein_coding-intron (ENSMUSG00000035236.17, intron 13 of 17) 1231 ENSMUSG00000035236.17 ENSMUSG00000035236 ENSMUST00000142872 Scai protein_coding Interval_46741 chr13 69768605 69769142 + 0 NA Intergenic Intergenic 3759 ENSMUSG00000112957.1 ENSMUSG00000112957 ENSMUST00000222281 4930547H16Rik lincRNA Interval_448 chr1 5443112 5443309 + 0 NA Intergenic Intergenic 39663 ENSMUSG00000102907.1 ENSMUSG00000102907 ENSMUST00000194850 Gm38264 TEC Interval_100360 chr2 168630502 168630796 + 0 NA Intergenic Intergenic 10110 ENSMUSG00000105496.1 ENSMUSG00000105496 ENSMUST00000200215 Mir7004 miRNA Interval_69932 chr17 3285561 3286741 + 0 NA intron (ENSMUSG00000116858.1, intron 1 of 3) lincRNA-intron (ENSMUSG00000116858.1, intron 1 of 3) -2944 ENSMUSG00000116874.1 ENSMUSG00000116874 ENSMUST00000231652 Gm34035 lincRNA Interval_83070 chr18 81047584 81048879 + 0 NA intron (ENSMUSG00000118268.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000118268.1, intron 1 of 2) 1407 ENSMUSG00000118268.1 ENSMUSG00000118268 ENSMUST00000237569 Gm50424 lincRNA Interval_23594 chr11 23644618 23645612 + 0 NA Intergenic Intergenic -11484 ENSMUSG00000042208.15 ENSMUSG00000042208 ENSMUST00000131612 0610010F05Rik protein_coding Interval_21155 chr10 126956928 126958523 + 0 NA promoter-TSS (ENSMUSG00000112035.1) lincRNA-promoter-TSS (ENSMUSG00000112035.1) -298 ENSMUSG00000112035.1 ENSMUSG00000112035 ENSMUST00000217769 Gm49335 lincRNA Interval_10115 chr1 165886303 165887444 + 0 NA intron (ENSMUSG00000026565.18, intron 13 of 16) protein_coding-intron (ENSMUSG00000026565.18, intron 12 of 14) -6713 ENSMUSG00000026565.18 ENSMUSG00000026565 ENSMUST00000176800 Pou2f1 protein_coding Interval_135024 chr6 34754397 34754834 + 0 NA intron (ENSMUSG00000029761.16, intron 4 of 12) protein_coding-intron (ENSMUSG00000029761.16, intron 5 of 12) -8245 ENSMUSG00000029761.16 ENSMUSG00000029761 ENSMUST00000132331 Cald1 protein_coding Interval_14840 chr10 40400420 40401011 + 0 NA intron (ENSMUSG00000038481.13, intron 2 of 11) protein_coding-intron (ENSMUSG00000038481.13, intron 2 of 12) -50612 ENSMUSG00000038491.9 ENSMUSG00000038491 ENSMUST00000044774 Cdk19os antisense Interval_111628 chr4 24836882 24837721 + 0 NA intron (ENSMUSG00000040387.16, intron 1 of 8) protein_coding-intron (ENSMUSG00000040387.16, intron 1 of 9) 44621 ENSMUSG00000087399.1 ENSMUSG00000087399 ENSMUST00000142373 Gm11899 antisense Interval_107453 chr3 107811974 107812746 + 0 NA Intergenic Intergenic 21179 ENSMUSG00000106426.1 ENSMUSG00000106426 ENSMUST00000198171 Gm36211 lincRNA Interval_167175 chr9 65856098 65856716 + 0 NA intron (ENSMUSG00000032386.15, intron 12 of 14) protein_coding-intron (ENSMUSG00000032386.15, intron 9 of 12) 18240 ENSMUSG00000079915.2 ENSMUSG00000079915 ENSMUST00000116032 Gm16073 processed_pseudogene Interval_150016 chr7 104842295 104842642 + 0 NA promoter-TSS (ENSMUSG00000062369.2) protein_coding-promoter-TSS (ENSMUSG00000062369.2) 135 ENSMUSG00000062369.2 ENSMUSG00000062369 ENSMUST00000076501 Usp17lb protein_coding Interval_19138 chr10 94978027 94978556 + 0 NA Intergenic Intergenic 21151 ENSMUSG00000112277.1 ENSMUSG00000112277 ENSMUST00000218192 Gm48867 lincRNA Interval_110881 chr4 9480132 9480438 + 0 NA intron (ENSMUSG00000028207.18, intron 20 of 22) protein_coding-intron (ENSMUSG00000028207.18, intron 21 of 23) -33086 ENSMUSG00000087564.1 ENSMUSG00000087564 ENSMUST00000155578 Gm11817 antisense Interval_104580 chr3 68492218 68495747 + 0 NA promoter-TSS (ENSMUSG00000027777.15) protein_coding-promoter-TSS (ENSMUSG00000027777.15) 491 ENSMUSG00000027777.15 ENSMUSG00000027777 ENSMUST00000182360 Schip1 protein_coding Interval_61840 chr15 84593542 84593827 + 0 NA Intergenic Intergenic -16567 ENSMUSG00000116409.1 ENSMUSG00000116409 ENSMUST00000229199 Gm34095 lincRNA Interval_165655 chr9 50715037 50715228 + 0 NA intron (ENSMUSG00000032064.17, intron 2 of 20) protein_coding-intron (ENSMUSG00000032064.17, intron 1 of 19) -17361 ENSMUSG00000032064.17 ENSMUSG00000032064 ENSMUST00000118707 Dixdc1 protein_coding Interval_129068 chr5 117217015 117217758 + 0 NA intron (ENSMUSG00000061288.13, intron 6 of 6) protein_coding-intron (ENSMUSG00000061288.13, intron 10 of 19) 20831 ENSMUSG00000084587.1 ENSMUSG00000084587 ENSMUST00000122638 n-R5s174 rRNA Interval_106658 chr3 98222206 98222956 + 0 NA intron (ENSMUSG00000027876.4, intron 1 of 5) protein_coding-intron (ENSMUSG00000027876.4, intron 1 of 5) 425 ENSMUSG00000027876.4 ENSMUSG00000027876 ENSMUST00000029469 Reg4 protein_coding Interval_160901 chr8 114801477 114802163 + 0 NA intron (ENSMUSG00000004637.15, intron 8 of 8) protein_coding-intron (ENSMUSG00000004637.15, intron 8 of 8) 89653 ENSMUSG00000004637.15 ENSMUSG00000004637 ENSMUST00000162052 Wwox protein_coding Interval_55732 chr14 99374975 99375919 + 0 NA Intergenic Intergenic -9430 ENSMUSG00000115746.1 ENSMUSG00000115746 ENSMUST00000227310 Gm49218 processed_pseudogene Interval_131905 chr5 140723717 140724457 + 0 NA promoter-TSS (ENSMUSG00000050022.16) protein_coding-promoter-TSS (ENSMUSG00000050022.16) -51 ENSMUSG00000050022.16 ENSMUSG00000050022 ENSMUST00000176035 Amz1 protein_coding Interval_30784 chr11 96438602 96439397 + 0 NA Intergenic Intergenic 25548 ENSMUSG00000075586.4 ENSMUSG00000075586 ENSMUST00000153012 Gm11529 processed_transcript Interval_137485 chr6 72713933 72714162 + 0 NA intron (ENSMUSG00000055799.13, intron 2 of 5) protein_coding-intron (ENSMUSG00000055799.13, intron 3 of 11) 14833 ENSMUSG00000079524.2 ENSMUSG00000079524 ENSMUST00000114051 Gm15402 antisense Interval_1891 chr1 34367599 34368888 + 0 NA intron (ENSMUSG00000101206.1, intron 1 of 1) processed_pseudogene-intron (ENSMUSG00000101206.1, intron 1 of 1) 872 ENSMUSG00000101206.1 ENSMUSG00000101206 ENSMUST00000187302 Gm5266 processed_pseudogene Interval_135766 chr6 47175306 47176759 + 0 NA intron (ENSMUSG00000039419.17, intron 20 of 23) protein_coding-intron (ENSMUSG00000039419.17, intron 20 of 23) 130876 ENSMUSG00000107952.1 ENSMUSG00000107952 ENSMUST00000203583 Gm6352 processed_pseudogene Interval_152528 chr7 133889486 133889756 + 0 NA intron (ENSMUSG00000054555.11, intron 12 of 12) protein_coding-intron (ENSMUSG00000054555.11, intron 22 of 22) 50120 ENSMUSG00000093032.1 ENSMUSG00000093032 ENSMUST00000175291 Gm23631 miRNA Interval_97207 chr2 132247324 132248242 + 0 NA promoter-TSS (ENSMUSG00000027341.10) protein_coding-promoter-TSS (ENSMUSG00000027341.10) 5 ENSMUSG00000027341.10 ENSMUSG00000027341 ENSMUST00000141813 Tmem230 protein_coding Interval_92378 chr2 59369945 59370198 + 0 NA Intergenic Intergenic 17400 ENSMUSG00000087455.7 ENSMUSG00000087455 ENSMUST00000155111 5330411J11Rik processed_transcript Interval_168438 chr9 80385971 80386728 + 0 NA intron (ENSMUSG00000032343.15, intron 7 of 7) protein_coding-intron (ENSMUSG00000032343.15, intron 7 of 15) -64899 ENSMUSG00000111267.1 ENSMUSG00000111267 ENSMUST00000216673 Gm18292 processed_pseudogene Interval_157107 chr8 65272271 65272496 + 0 NA Intergenic Intergenic 6804 ENSMUSG00000110226.1 ENSMUSG00000110226 ENSMUST00000209702 Gm7624 processed_pseudogene Interval_83371 chr18 84663679 84665268 + 0 NA Intergenic Intergenic -4629 ENSMUSG00000092056.2 ENSMUSG00000092056 ENSMUST00000168993 Gm7289 processed_pseudogene Interval_16589 chr10 64668163 64669041 + 0 NA intron (ENSMUSG00000060843.11, intron 12 of 17) protein_coding-intron (ENSMUSG00000060843.11, intron 11 of 16) -363858 ENSMUSG00000089003.1 ENSMUSG00000089003 ENSMUST00000158378 Gm23854 snRNA Interval_171043 chr9 113939254 113939556 + 0 NA intron (ENSMUSG00000009741.15, intron 1 of 13) protein_coding-intron (ENSMUSG00000009741.15, intron 2 of 15) 7776 ENSMUSG00000009741.15 ENSMUSG00000009741 ENSMUST00000216293 Ubp1 protein_coding Interval_143139 chr7 3616819 3617914 + 0 NA promoter-TSS (ENSMUSG00000035674.13) protein_coding-promoter-TSS (ENSMUSG00000035674.13) -19 ENSMUSG00000035674.13 ENSMUSG00000035674 ENSMUST00000134683 Ndufa3 protein_coding Interval_168067 chr9 75822874 75823138 + 0 NA intron (ENSMUSG00000032179.7, intron 1 of 6) protein_coding-intron (ENSMUSG00000032179.7, intron 1 of 6) -5016 ENSMUSG00000032179.7 ENSMUSG00000032179 ENSMUST00000137213 Bmp5 protein_coding Interval_71467 chr17 23968525 23969976 + 0 NA Intergenic Intergenic 11316 ENSMUSG00000024124.10 ENSMUSG00000024124 ENSMUST00000147626 Prss30 protein_coding Interval_110217 chr3 154412310 154412704 + 0 NA Intergenic Intergenic 80510 ENSMUSG00000093738.2 ENSMUSG00000093738 ENSMUST00000181234 AI606473 processed_transcript Interval_140671 chr6 120446493 120447007 + 0 NA Intergenic Intergenic -16497 ENSMUSG00000002897.5 ENSMUSG00000002897 ENSMUST00000204078 Il17ra protein_coding Interval_140238 chr6 115734891 115735189 + 0 NA promoter-TSS (ENSMUSG00000059900.14) protein_coding-promoter-TSS (ENSMUSG00000059900.14) -11208 ENSMUSG00000088358.1 ENSMUSG00000088358 ENSMUST00000157733 Gm24008 snoRNA Interval_123233 chr5 30785273 30785492 + 0 NA intron (ENSMUSG00000029168.14, intron 8 of 12) protein_coding-intron (ENSMUSG00000029168.14, intron 8 of 12) -2808 ENSMUSG00000029168.14 ENSMUSG00000029168 ENSMUST00000138625 Dpysl5 protein_coding Interval_67144 chr16 43881654 43882247 + 0 NA promoter-TSS (ENSMUSG00000022704.16) protein_coding-promoter-TSS (ENSMUSG00000022704.16) -737 ENSMUSG00000022704.16 ENSMUSG00000022704 ENSMUST00000124674 Qtrt2 protein_coding Interval_89724 chr2 25008246 25008678 + 0 NA intron (ENSMUSG00000036833.16, intron 5 of 5) protein_coding-intron (ENSMUSG00000036833.16, intron 14 of 34) -2204 ENSMUSG00000065798.1 ENSMUSG00000065798 ENSMUST00000083864 Gm25518 snRNA Interval_172838 chrX 51171566 51171787 + 0 NA intron (ENSMUSG00000036109.17, intron 1 of 1) protein_coding-intron (ENSMUSG00000036109.17, intron 1 of 6) 34856 ENSMUSG00000036109.17 ENSMUSG00000036109 ENSMUST00000156028 Mbnl3 protein_coding Interval_83064 chr18 80979536 80982923 + 0 NA intron (ENSMUSG00000024565.10, intron 1 of 2) protein_coding-intron (ENSMUSG00000024565.10, intron 1 of 3) 5307 ENSMUSG00000024565.10 ENSMUSG00000024565 ENSMUST00000235746 Sall3 protein_coding Interval_97832 chr2 144329274 144332336 + 0 NA promoter-TSS (ENSMUSG00000084837.1) antisense-promoter-TSS (ENSMUSG00000084837.1) 521 ENSMUSG00000037279.13 ENSMUSG00000037279 ENSMUST00000138582 Ovol2 protein_coding Interval_169799 chr9 101523209 101523488 + 0 NA Intergenic Intergenic -73995 ENSMUSG00000061486.7 ENSMUSG00000061486 ENSMUST00000075243 Gm5161 processed_pseudogene Interval_4841 chr1 80174775 80175077 + 0 NA Intergenic Intergenic -9793 ENSMUSG00000099552.1 ENSMUSG00000099552 ENSMUST00000185548 9830004L10Rik lincRNA Interval_83681 chr19 3690838 3691072 + 0 NA intron (ENSMUSG00000118249.1, intron 2 of 2) lincRNA-intron (ENSMUSG00000118249.1, intron 2 of 2) -4394 ENSMUSG00000024913.16 ENSMUSG00000024913 ENSMUST00000176867 Lrp5 protein_coding Interval_70404 chr17 9824602 9825546 + 0 NA Intergenic Intergenic 24114 ENSMUSG00000117290.1 ENSMUSG00000117290 ENSMUST00000232698 Gm34883 TEC Interval_26020 chr11 53514423 53514705 + 0 NA Intergenic Intergenic -5363 ENSMUSG00000018398.18 ENSMUSG00000018398 ENSMUST00000145927 Septin8 protein_coding Interval_137710 chr6 81071540 81071997 + 0 NA Intergenic Intergenic 244630 ENSMUSG00000108040.1 ENSMUSG00000108040 ENSMUST00000204868 Gm43900 TEC Interval_149263 chr7 96788034 96788274 + 0 NA intron (ENSMUSG00000048078.16, intron 1 of 1) protein_coding-intron (ENSMUSG00000048078.16, intron 16 of 32) -8487 ENSMUSG00000048078.16 ENSMUSG00000048078 ENSMUST00000147659 Tenm4 protein_coding Interval_28779 chr11 78273837 78274280 + 0 NA TTS (ENSMUSG00000010277.7) protein_coding-TTS (ENSMUSG00000010277.7) 5008 ENSMUSG00000086586.1 ENSMUSG00000086586 ENSMUST00000127017 Gm11192 antisense Interval_51156 chr14 24233923 24235388 + 0 NA intron (ENSMUSG00000021782.14, intron 1 of 31) protein_coding-intron (ENSMUSG00000021782.14, intron 1 of 30) 8736 ENSMUSG00000091079.1 ENSMUSG00000091079 ENSMUST00000163715 Gm17105 sense_intronic Interval_27310 chr11 65975852 65976134 + 0 NA intron (ENSMUSG00000056752.16, intron 6 of 30) protein_coding-intron (ENSMUSG00000056752.16, intron 43 of 68) 29202 ENSMUSG00000056752.16 ENSMUSG00000056752 ENSMUST00000142836 Dnah9 protein_coding Interval_85860 chr19 32469817 32471202 + 0 NA Intergenic Intergenic -3931 ENSMUSG00000062456.4 ENSMUSG00000062456 ENSMUST00000078034 Rpl9-ps6 protein_coding Interval_26825 chr11 60878207 60879758 + 0 NA promoter-TSS (ENSMUSG00000043284.12) protein_coding-promoter-TSS (ENSMUSG00000043284.12) 56 ENSMUSG00000043284.12 ENSMUSG00000043284 ENSMUST00000155031 Tmem11 protein_coding Interval_140034 chr6 113554879 113555457 + 0 NA exon (ENSMUSG00000034023.16, exon 17 of 44) protein_coding-exon (ENSMUSG00000034023.16, exon 17 of 44) 9697 ENSMUSG00000107786.1 ENSMUSG00000107786 ENSMUST00000204537 Gm44232 processed_pseudogene Interval_152763 chr7 137321271 137323307 + 0 NA Intergenic Intergenic -8303 ENSMUSG00000010476.14 ENSMUSG00000010476 ENSMUST00000209864 Ebf3 protein_coding Interval_58765 chr15 37952910 37953171 + 0 NA intron (ENSMUSG00000022292.16, intron 1 of 7) protein_coding-intron (ENSMUSG00000022292.16, intron 2 of 8) -4598 ENSMUSG00000022292.16 ENSMUSG00000022292 ENSMUST00000145155 Rrm2b protein_coding Interval_166034 chr9 55637939 55638497 + 0 NA intron (ENSMUSG00000034007.10, intron 26 of 32) protein_coding-intron (ENSMUSG00000034007.10, intron 24 of 30) -82506 ENSMUSG00000064472.1 ENSMUSG00000064472 ENSMUST00000082538 Gm23407 snRNA Interval_104936 chr3 79143480 79145336 + 0 NA intron (ENSMUSG00000062232.14, intron 3 of 4) protein_coding-intron (ENSMUSG00000062232.14, intron 1 of 23) -51966 ENSMUSG00000064693.1 ENSMUSG00000064693 ENSMUST00000082759 Gm24150 snRNA Interval_170795 chr9 110834400 110835241 + 0 NA intron (ENSMUSG00000047257.13, intron 1 of 4) protein_coding-intron (ENSMUSG00000047257.13, intron 1 of 5) 232 ENSMUSG00000047257.13 ENSMUSG00000047257 ENSMUST00000146794 Prss45 protein_coding Interval_21291 chr10 127692672 127693752 + 0 NA intron (ENSMUSG00000040195.11, intron 7 of 10) protein_coding-intron (ENSMUSG00000040195.11, intron 5 of 8) -16488 ENSMUSG00000087163.1 ENSMUSG00000087163 ENSMUST00000155550 Gm16230 antisense Interval_31874 chr11 103507245 103507659 + 0 NA Intergenic Intergenic -2855 ENSMUSG00000078632.4 ENSMUSG00000078632 ENSMUST00000153273 Lrrc37a protein_coding Interval_79421 chr18 31788515 31789691 + 0 NA promoter-TSS (ENSMUSG00000024258.4) protein_coding-promoter-TSS (ENSMUSG00000024258.4) -57 ENSMUSG00000024258.4 ENSMUSG00000024258 ENSMUST00000234146 Polr2d protein_coding Interval_107874 chr3 116493581 116494083 + 0 NA TTS (ENSMUSG00000000339.14) protein_coding-TTS (ENSMUSG00000000339.14) 14233 ENSMUSG00000000339.14 ENSMUSG00000000339 ENSMUST00000143425 Rtca protein_coding Interval_24066 chr11 29910079 29910321 + 0 NA intron (ENSMUSG00000044072.14, intron 2 of 41) protein_coding-intron (ENSMUSG00000044072.14, intron 2 of 41) 60739 ENSMUSG00000088135.1 ENSMUSG00000088135 ENSMUST00000157510 Gm22588 snoRNA Interval_133733 chr6 10677926 10678424 + 0 NA Intergenic Intergenic 96839 ENSMUSG00000108222.1 ENSMUSG00000108222 ENSMUST00000203205 Gm2691 processed_pseudogene Interval_56626 chr14 120930206 120930426 + 0 NA intron (ENSMUSG00000030662.10, intron 10 of 25) protein_coding-intron (ENSMUSG00000030662.10, intron 10 of 25) 14469 ENSMUSG00000030662.10 ENSMUSG00000030662 ENSMUST00000228277 Ipo5 protein_coding Interval_169449 chr9 97439378 97440026 + 0 NA promoter-TSS (ENSMUSG00000077208.1) snoRNA-promoter-TSS (ENSMUSG00000077208.1) -75 ENSMUSG00000077208.1 ENSMUSG00000077208 ENSMUST00000104020 Gm25607 snoRNA Interval_58427 chr15 34442800 34444440 + 0 NA promoter-TSS (ENSMUSG00000058600.13) protein_coding-promoter-TSS (ENSMUSG00000058600.13) 640 ENSMUSG00000115685.1 ENSMUSG00000115685 ENSMUST00000228100 D730044K07Rik TEC Interval_48916 chr13 104805303 104806251 + 0 NA intron (ENSMUSG00000021715.12, intron 4 of 13) protein_coding-intron (ENSMUSG00000021715.12, intron 4 of 13) 11365 ENSMUSG00000021715.12 ENSMUSG00000021715 ENSMUST00000154165 Cwc27 protein_coding Interval_129811 chr5 122486335 122487016 + 0 NA intron (ENSMUSG00000029467.15, intron 5 of 20) protein_coding-intron (ENSMUSG00000029467.15, intron 5 of 19) -1676 ENSMUSG00000105434.1 ENSMUSG00000105434 ENSMUST00000197944 Gm43359 TEC Interval_75440 chr17 66550058 66551038 + 0 NA Intergenic Intergenic 18445 ENSMUSG00000117235.1 ENSMUSG00000117235 ENSMUST00000233785 Gm49938 lincRNA Interval_54407 chr14 68693261 68693663 + 0 NA Intergenic Intergenic -38492 ENSMUSG00000114641.1 ENSMUSG00000114641 ENSMUST00000224710 Gm46476 processed_pseudogene Interval_91748 chr2 49116738 49117128 + 0 NA intron (ENSMUSG00000036792.12, intron 4 of 4) protein_coding-intron (ENSMUSG00000036792.12, intron 4 of 10) -68085 ENSMUSG00000080937.1 ENSMUSG00000080937 ENSMUST00000118659 Gm13510 processed_pseudogene Interval_124082 chr5 38168540 38168788 + 0 NA Intergenic Intergenic -9191 ENSMUSG00000029126.7 ENSMUSG00000029126 ENSMUST00000201134 Nsg1 protein_coding Interval_45836 chr13 58456321 58457336 + 0 NA Intergenic Intergenic 13807 ENSMUSG00000114654.1 ENSMUSG00000114654 ENSMUST00000225848 Gm47918 lincRNA Interval_39865 chr12 99205898 99206333 + 0 NA intron (ENSMUSG00000033713.12, intron 3 of 3) protein_coding-intron (ENSMUSG00000033713.12, intron 5 of 5) -39556 ENSMUSG00000093419.1 ENSMUSG00000093419 ENSMUST00000177490 Gm19898 processed_pseudogene Interval_105249 chr3 84200907 84201253 + 0 NA intron (ENSMUSG00000027993.16, intron 3 of 3) protein_coding-intron (ENSMUSG00000027993.16, intron 3 of 11) 26976 ENSMUSG00000104043.1 ENSMUSG00000104043 ENSMUST00000193882 Gm6525 protein_coding Interval_151092 chr7 118498898 118500328 + 0 NA Intergenic Intergenic -7638 ENSMUSG00000095115.2 ENSMUSG00000095115 ENSMUST00000178344 Itpripl2 protein_coding Interval_1799 chr1 33861151 33861398 + 0 NA intron (ENSMUSG00000042182.16, intron 2 of 2) protein_coding-intron (ENSMUSG00000042182.16, intron 6 of 6) 22206 ENSMUSG00000042182.16 ENSMUSG00000042182 ENSMUST00000139700 Bend6 protein_coding Interval_155507 chr8 33981690 33982110 + 0 NA Intergenic Intergenic -4014 ENSMUSG00000110663.1 ENSMUSG00000110663 ENSMUST00000212322 Gm39157 lincRNA Interval_16686 chr10 67033716 67035002 + 0 NA TTS (ENSMUSG00000019873.8) protein_coding-TTS (ENSMUSG00000019873.8) 2963 ENSMUSG00000019873.8 ENSMUSG00000019873 ENSMUST00000219431 Reep3 protein_coding Interval_64749 chr16 15076563 15076775 + 0 NA Intergenic Intergenic 76347 ENSMUSG00000116317.1 ENSMUSG00000116317 ENSMUST00000230174 Gm49536 processed_pseudogene Interval_139652 chr6 105548203 105550093 + 0 NA Intergenic Intergenic 17628 ENSMUSG00000108270.1 ENSMUSG00000108270 ENSMUST00000203198 Gm4602 processed_pseudogene Interval_103142 chr3 35893048 35893391 + 0 NA TTS (ENSMUSG00000027708.14) protein_coding-TTS (ENSMUSG00000027708.14) 29342 ENSMUSG00000097713.1 ENSMUSG00000097713 ENSMUST00000181445 Gm7741 processed_pseudogene Interval_43476 chr13 31705194 31706227 + 0 NA Intergenic Intergenic 32030 ENSMUSG00000065843.1 ENSMUSG00000065843 ENSMUST00000083909 Gm25186 snRNA Interval_124388 chr5 45441178 45441372 + 0 NA intron (ENSMUSG00000015806.12, intron 1 of 3) protein_coding-intron (ENSMUSG00000015806.12, intron 4 of 6) 2321 ENSMUSG00000015806.12 ENSMUSG00000015806 ENSMUST00000127562 Qdpr protein_coding Interval_164022 chr9 30995294 30995539 + 0 NA intron (ENSMUSG00000111673.1, intron 1 of 2) antisense-intron (ENSMUSG00000111673.1, intron 1 of 2) 14647 ENSMUSG00000111673.1 ENSMUSG00000111673 ENSMUST00000216803 Gm29724 antisense Interval_6838 chr1 119996968 119997941 + 0 NA promoter-TSS (ENSMUSG00000036962.12) protein_coding-promoter-TSS (ENSMUSG00000036962.12) -220 ENSMUSG00000036962.12 ENSMUSG00000036962 ENSMUST00000174458 Cfap221 protein_coding Interval_4798 chr1 78967270 78967613 + 0 NA TTS (ENSMUSG00000072978.3) processed_pseudogene-TTS (ENSMUSG00000072978.3) 638 ENSMUSG00000072978.3 ENSMUSG00000072978 ENSMUST00000049117 Gm5830 processed_pseudogene Interval_147519 chr7 67989049 67990073 + 0 NA intron (ENSMUSG00000005533.10, intron 1 of 20) protein_coding-intron (ENSMUSG00000005533.10, intron 1 of 20) -102976 ENSMUSG00000109152.1 ENSMUSG00000109152 ENSMUST00000208544 Gm44666 processed_pseudogene Interval_142432 chr6 142191473 142191804 + 0 NA intron (ENSMUSG00000118597.1, intron 1 of 2) protein_coding-intron (ENSMUSG00000079262.3, intron 1 of 2) 16883 ENSMUSG00000079262.3 ENSMUSG00000079262 ENSMUST00000174455 Slco1a6 protein_coding Interval_16053 chr10 60361593 60362300 + 0 NA intron (ENSMUSG00000020101.14, intron 3 of 6) protein_coding-intron (ENSMUSG00000020101.14, intron 3 of 6) 14934 ENSMUSG00000020101.14 ENSMUSG00000020101 ENSMUST00000105459 Vsir protein_coding Interval_50078 chr14 7841199 7841965 + 0 NA intron (ENSMUSG00000025278.9, intron 1 of 45) protein_coding-intron (ENSMUSG00000025278.9, intron 1 of 45) 40374 ENSMUSG00000049460.7 ENSMUSG00000049460 ENSMUST00000057361 Gm8396 processed_pseudogene Interval_78328 chr18 12000778 12000983 + 0 NA intron (ENSMUSG00000049411.15, intron 14 of 15) protein_coding-intron (ENSMUSG00000049411.15, intron 11 of 12) 87749 ENSMUSG00000117430.1 ENSMUSG00000117430 ENSMUST00000234828 Gm49968 TEC Interval_97457 chr2 136749335 136749747 + 0 NA intron (ENSMUSG00000027273.13, intron 1 of 2) protein_coding-intron (ENSMUSG00000027273.13, intron 1 of 7) -4926 ENSMUSG00000082849.1 ENSMUSG00000082849 ENSMUST00000121662 Gm14053 processed_pseudogene Interval_171920 chr9 122571553 122573103 + 0 NA promoter-TSS (ENSMUSG00000097736.8) lincRNA-promoter-TSS (ENSMUSG00000097736.8) -174 ENSMUSG00000097736.8 ENSMUSG00000097736 ENSMUST00000181719 9530059O14Rik lincRNA Interval_2539 chr1 40052074 40052655 + 0 NA Intergenic Intergenic -1996 ENSMUSG00000102985.1 ENSMUSG00000102985 ENSMUST00000193054 4930456G14Rik TEC Interval_91723 chr2 48865031 48865954 + 0 NA intron (ENSMUSG00000052155.5, intron 1 of 10) protein_coding-intron (ENSMUSG00000052155.5, intron 1 of 10) -24897 ENSMUSG00000052155.5 ENSMUSG00000052155 ENSMUST00000156681 Acvr2a protein_coding Interval_56005 chr14 104033082 104033796 + 0 NA Intergenic Intergenic -6297 ENSMUSG00000115727.1 ENSMUSG00000115727 ENSMUST00000227414 4930432J09Rik lincRNA Interval_88781 chr2 10649395 10649562 + 0 NA Intergenic Intergenic 131323 ENSMUSG00000080594.1 ENSMUSG00000080594 ENSMUST00000116944 Mir669h miRNA Interval_72601 chr17 30955918 30956249 + 0 NA intron (ENSMUSG00000054134.14, intron 1 of 22) protein_coding-intron (ENSMUSG00000054134.14, intron 1 of 22) 1404 ENSMUSG00000054134.14 ENSMUSG00000054134 ENSMUST00000235827 Umodl1 protein_coding Interval_150729 chr7 113901945 113902346 + 0 NA intron (ENSMUSG00000038156.16, intron 5 of 5) protein_coding-intron (ENSMUSG00000038156.16, intron 5 of 15) 135971 ENSMUSG00000038156.16 ENSMUSG00000038156 ENSMUST00000084696 Spon1 protein_coding Interval_47378 chr13 82449865 82450385 + 0 NA Intergenic Intergenic -70482 ENSMUSG00000114932.1 ENSMUSG00000114932 ENSMUST00000224376 Gm4936 processed_pseudogene Interval_21431 chr10 128565293 128566697 + 0 NA promoter-TSS (ENSMUSG00000025364.13) protein_coding-promoter-TSS (ENSMUSG00000025364.13) -126 ENSMUSG00000025364.13 ENSMUSG00000025364 ENSMUST00000147068 Pa2g4 protein_coding Interval_74869 chr17 56982028 56982238 + 0 NA promoter-TSS (ENSMUSG00000045019.4) protein_coding-promoter-TSS (ENSMUSG00000045019.4) -7 ENSMUSG00000045019.4 ENSMUSG00000045019 ENSMUST00000056113 Acer1 protein_coding Interval_105500 chr3 87082124 87083424 + 0 NA exon (ENSMUSG00000041734.15, exon 16 of 16) protein_coding-exon (ENSMUSG00000041734.15, exon 16 of 16) 15881 ENSMUSG00000077672.1 ENSMUSG00000077672 ENSMUST00000104484 Gm24472 snoRNA Interval_99430 chr2 160997719 160998041 + 0 NA TTS (ENSMUSG00000077795.1) snoRNA-TTS (ENSMUSG00000077795.1) 1103 ENSMUSG00000077795.1 ENSMUSG00000077795 ENSMUST00000104607 Gm25561 snoRNA Interval_4085 chr1 67893329 67893887 + 0 NA Intergenic Intergenic -9622 ENSMUSG00000104395.1 ENSMUSG00000104395 ENSMUST00000192182 Gm37957 TEC Interval_135676 chr6 43204794 43206120 + 0 NA Intergenic Intergenic -4876 ENSMUSG00000096158.1 ENSMUSG00000096158 ENSMUST00000178247 Gm21827 processed_pseudogene Interval_74914 chr17 57261689 57262228 + 0 NA TTS (ENSMUSG00000019487.11) protein_coding-TTS (ENSMUSG00000019487.11) 5964 ENSMUSG00000118457.1 ENSMUSG00000118457 ENSMUST00000238696 Gm46575 unitary_pseudogene Interval_124886 chr5 59260910 59261136 + 0 NA Intergenic Intergenic -45971 ENSMUSG00000096124.1 ENSMUSG00000096124 ENSMUST00000177609 Gm22308 snRNA Interval_168477 chr9 81799028 81799286 + 0 NA intron (ENSMUSG00000097241.2, intron 2 of 2) antisense-intron (ENSMUSG00000097241.2, intron 2 of 2) 59734 ENSMUSG00000097241.2 ENSMUSG00000097241 ENSMUST00000181794 Gm26907 antisense Interval_30055 chr11 88918473 88918908 + 0 NA intron (ENSMUSG00000087338.2, intron 2 of 4) antisense-intron (ENSMUSG00000087338.2, intron 2 of 4) 12762 ENSMUSG00000087338.2 ENSMUSG00000087338 ENSMUST00000139592 Scpep1os antisense Interval_115238 chr4 94725714 94725953 + 0 NA Intergenic Intergenic 46653 ENSMUSG00000028576.12 ENSMUSG00000028576 ENSMUST00000152289 Ift74 protein_coding Interval_29901 chr11 87622900 87623924 + 0 NA intron (ENSMUSG00000070345.3, intron 2 of 5) protein_coding-intron (ENSMUSG00000070345.3, intron 2 of 5) 6248 ENSMUSG00000070345.3 ENSMUSG00000070345 ENSMUST00000093956 Hsf5 protein_coding Interval_62863 chr15 97471301 97472520 + 0 NA Intergenic Intergenic 86380 ENSMUSG00000116131.1 ENSMUSG00000116131 ENSMUST00000230522 Gm49506 processed_pseudogene Interval_136896 chr6 63496954 63497161 + 0 NA intron (ENSMUSG00000071424.10, intron 1 of 8) protein_coding-intron (ENSMUSG00000071424.10, intron 1 of 15) -168616 ENSMUSG00000107525.1 ENSMUSG00000107525 ENSMUST00000204180 Gm44071 antisense Interval_114927 chr4 87065042 87066507 + 0 NA intron (ENSMUSG00000037996.17, intron 3 of 5) protein_coding-intron (ENSMUSG00000037996.17, intron 3 of 9) 135083 ENSMUSG00000038007.14 ENSMUSG00000038007 ENSMUST00000135874 Acer2 protein_coding Interval_45181 chr13 52982884 52983184 + 0 NA Intergenic Intergenic -1961 ENSMUSG00000056749.7 ENSMUSG00000056749 ENSMUST00000071065 Nfil3 protein_coding Interval_29767 chr11 86660334 86660634 + 0 NA intron (ENSMUSG00000018171.9, intron 2 of 2) protein_coding-intron (ENSMUSG00000018171.9, intron 5 of 11) -23501 ENSMUSG00000072582.9 ENSMUSG00000072582 ENSMUST00000108021 Ptrh2 protein_coding Interval_148041 chr7 78770808 78771589 + 0 NA Intergenic Intergenic 7168 ENSMUSG00000108536.1 ENSMUSG00000108536 ENSMUST00000205558 Gm45059 TEC Interval_60275 chr15 72024675 72026505 + 0 NA intron (ENSMUSG00000079022.10, intron 1 of 63) protein_coding-intron (ENSMUSG00000079022.10, intron 1 of 63) -71191 ENSMUSG00000079022.10 ENSMUSG00000079022 ENSMUST00000162081 Col22a1 protein_coding Interval_105492 chr3 86998620 86999535 + 0 NA promoter-TSS (ENSMUSG00000028076.12) protein_coding-promoter-TSS (ENSMUSG00000028076.12) 264 ENSMUSG00000028076.12 ENSMUSG00000028076 ENSMUST00000142793 Cd1d1 protein_coding Interval_60064 chr15 64362264 64362780 + 0 NA intron (ENSMUSG00000022377.16, intron 1 of 30) protein_coding-intron (ENSMUSG00000022377.16, intron 1 of 30) -33505 ENSMUSG00000115646.1 ENSMUSG00000115646 ENSMUST00000228336 Gm10926 TEC Interval_118536 chr4 132349599 132351552 + 0 NA intron (ENSMUSG00000028896.13, intron 2 of 5) protein_coding-intron (ENSMUSG00000028896.13, intron 1 of 10) -1197 ENSMUSG00000091021.1 ENSMUSG00000091021 ENSMUST00000172202 Gm17300 lincRNA Interval_23223 chr11 20649474 20650423 + 0 NA TTS (ENSMUSG00000049800.13) protein_coding-TTS (ENSMUSG00000049800.13) -74759 ENSMUSG00000083555.1 ENSMUSG00000083555 ENSMUST00000121890 Gm12035 processed_pseudogene Interval_116827 chr4 117527804 117528947 + 0 NA Intergenic Intergenic -14174 ENSMUSG00000083446.1 ENSMUSG00000083446 ENSMUST00000121841 Gm12826 processed_pseudogene Interval_131930 chr5 140859885 140860190 + 0 NA Intergenic Intergenic -29880 ENSMUSG00000000149.10 ENSMUSG00000000149 ENSMUST00000198447 Gna12 protein_coding Interval_170991 chr9 113557833 113558469 + 0 NA intron (ENSMUSG00000109890.2, intron 1 of 4) lincRNA-intron (ENSMUSG00000109890.2, intron 1 of 4) 27922 ENSMUSG00000111388.1 ENSMUSG00000111388 ENSMUST00000213870 Gm7183 processed_pseudogene Interval_84396 chr19 10612983 10613449 + 0 NA intron (ENSMUSG00000024740.10, intron 3 of 4) protein_coding-intron (ENSMUSG00000024740.10, intron 7 of 26) -5778 ENSMUSG00000024740.10 ENSMUSG00000024740 ENSMUST00000236279 Ddb1 protein_coding Interval_161581 chr8 121374424 121375156 + 0 NA intron (ENSMUSG00000092329.1, intron 1 of 15) protein_coding-intron (ENSMUSG00000092329.1, intron 1 of 15) -17954 ENSMUSG00000097384.1 ENSMUSG00000097384 ENSMUST00000181200 Gm26815 lincRNA Interval_84478 chr19 11733400 11733624 + 0 NA Intergenic Intergenic -14042 ENSMUSG00000024682.3 ENSMUSG00000024682 ENSMUST00000025585 Cblif protein_coding Interval_146886 chr7 54835192 54836591 + 0 NA exon (ENSMUSG00000063297.7, exon 1 of 12) protein_coding-exon (ENSMUSG00000063297.7, exon 1 of 12) 393 ENSMUSG00000063297.7 ENSMUSG00000063297 ENSMUST00000082373 Luzp2 protein_coding Interval_27409 chr11 67431840 67432505 + 0 NA Intergenic Intergenic 67387 ENSMUSG00000060180.12 ENSMUSG00000060180 ENSMUST00000181027 Myh13 protein_coding Interval_106976 chr3 102338246 102338532 + 0 NA intron (ENSMUSG00000105891.4, intron 2 of 4) lincRNA-intron (ENSMUSG00000105891.4, intron 2 of 4) -30773 ENSMUSG00000105966.1 ENSMUSG00000105966 ENSMUST00000199507 Gm43242 lincRNA Interval_53386 chr14 56830041 56831722 + 0 NA Intergenic Intergenic 6155 ENSMUSG00000114420.1 ENSMUSG00000114420 ENSMUST00000225694 Gm48906 processed_pseudogene Interval_106351 chr3 95559162 95560601 + 0 NA intron (ENSMUSG00000028109.14, intron 1 of 14) protein_coding-intron (ENSMUSG00000028109.14, intron 1 of 14) 203 ENSMUSG00000028109.14 ENSMUSG00000028109 ENSMUST00000107154 Hormad1 protein_coding Interval_96677 chr2 127089160 127089772 + 0 NA intron (ENSMUSG00000001999.15, intron 5 of 5) protein_coding-intron (ENSMUSG00000001999.15, intron 5 of 7) 18801 ENSMUSG00000001999.15 ENSMUSG00000001999 ENSMUST00000142737 Blvra protein_coding Interval_65518 chr16 23030319 23032003 + 0 NA Intergenic Intergenic -1679 ENSMUSG00000060459.14 ENSMUSG00000060459 ENSMUST00000231835 Kng2 protein_coding Interval_111617 chr4 24610692 24611212 + 0 NA Intergenic Intergenic 114501 ENSMUSG00000045751.16 ENSMUSG00000045751 ENSMUST00000123984 Mms22l protein_coding Interval_104414 chr3 65434746 65435594 + 0 NA Intergenic Intergenic 41833 ENSMUSG00000048916.7 ENSMUSG00000048916 ENSMUST00000131852 Gm5540 processed_pseudogene Interval_128118 chr5 111097396 111098347 + 0 NA intron (ENSMUSG00000033209.17, intron 3 of 22) protein_coding-intron (ENSMUSG00000033209.17, intron 3 of 23) -60440 ENSMUSG00000106153.1 ENSMUSG00000106153 ENSMUST00000198098 Gm43677 TEC Interval_107885 chr3 116584823 116585210 + 0 NA TTS (ENSMUSG00000033439.12) protein_coding-TTS (ENSMUSG00000033439.12) -1540 ENSMUSG00000033439.12 ENSMUSG00000033439 ENSMUST00000198103 Trmt13 protein_coding Interval_94810 chr2 94556415 94556601 + 0 NA Intergenic Intergenic -18439 ENSMUSG00000106196.1 ENSMUSG00000106196 ENSMUST00000116740 Gm44461 miRNA Interval_58290 chr15 31695235 31695645 + 0 NA Intergenic Intergenic 38198 ENSMUSG00000115589.1 ENSMUSG00000115589 ENSMUST00000228855 Gm18003 processed_pseudogene Interval_110004 chr3 152420469 152420933 + 0 NA intron (ENSMUSG00000039068.16, intron 2 of 11) protein_coding-intron (ENSMUSG00000039068.16, intron 2 of 13) 24569 ENSMUSG00000039068.16 ENSMUSG00000039068 ENSMUST00000135044 Zzz3 protein_coding Interval_50387 chr14 12343554 12346782 + 0 NA exon (ENSMUSG00000021743.6, exon 2 of 5) protein_coding-exon (ENSMUSG00000021743.6, exon 2 of 5) 676 ENSMUSG00000021743.6 ENSMUSG00000021743 ENSMUST00000224023 Fezf2 protein_coding Interval_12187 chr1 190697572 190698278 + 0 NA Intergenic Intergenic 103599 ENSMUSG00000103963.1 ENSMUSG00000103963 ENSMUST00000191893 Gm30932 lincRNA Interval_167564 chr9 70491187 70491814 + 0 NA intron (ENSMUSG00000032217.13, intron 1 of 4) protein_coding-intron (ENSMUSG00000032217.13, intron 2 of 14) 16016 ENSMUSG00000065202.1 ENSMUSG00000065202 ENSMUST00000083268 Gm24615 snoRNA Interval_143796 chr7 16364600 16365587 + 0 NA intron (ENSMUSG00000052833.9, intron 5 of 8) protein_coding-intron (ENSMUSG00000052833.9, intron 5 of 8) 22713 ENSMUSG00000052833.9 ENSMUSG00000052833 ENSMUST00000209749 Sae1 protein_coding Interval_159461 chr8 94864394 94865066 + 0 NA TTS (ENSMUSG00000031783.10) protein_coding-TTS (ENSMUSG00000031783.10) 3014 ENSMUSG00000031783.10 ENSMUSG00000031783 ENSMUST00000212848 Polr2c protein_coding Interval_58135 chr15 28360364 28360842 + 0 NA intron (ENSMUSG00000022262.8, intron 47 of 78) protein_coding-intron (ENSMUSG00000022262.8, intron 47 of 78) 144588 ENSMUSG00000115473.1 ENSMUSG00000115473 ENSMUST00000228335 Gm49278 processed_pseudogene Interval_89160 chr2 17717233 17717915 + 0 NA intron (ENSMUSG00000053702.16, intron 2 of 6) protein_coding-intron (ENSMUSG00000053702.16, intron 2 of 6) 80410 ENSMUSG00000081851.1 ENSMUSG00000081851 ENSMUST00000120245 Gm13323 processed_pseudogene Interval_74474 chr17 51498975 51499248 + 0 NA Intergenic Intergenic -14390 ENSMUSG00000117041.1 ENSMUSG00000117041 ENSMUST00000233844 Gm46574 processed_pseudogene Interval_3864 chr1 63944724 63946075 + 0 NA Intergenic Intergenic -19328 ENSMUSG00000044689.5 ENSMUSG00000044689 ENSMUST00000133244 Gm13749 lincRNA Interval_140389 chr6 117789029 117789695 + 0 NA Intergenic Intergenic -19358 ENSMUSG00000071237.4 ENSMUSG00000071237 ENSMUST00000120444 Gemin6-ps processed_pseudogene Interval_112594 chr4 43459500 43459883 + 0 NA Intergenic Intergenic -5368 ENSMUSG00000028459.11 ENSMUSG00000028459 ENSMUST00000141198 Cd72 protein_coding Interval_30048 chr11 88882676 88883683 + 0 NA Intergenic Intergenic -21942 ENSMUSG00000065012.1 ENSMUSG00000065012 ENSMUST00000083078 Gm23507 snRNA Interval_157392 chr8 70089524 70089902 + 0 NA exon (ENSMUSG00000007594.10, exon 5 of 5) protein_coding-exon (ENSMUSG00000007594.10, exon 5 of 5) 5569 ENSMUSG00000007594.10 ENSMUSG00000007594 ENSMUST00000213092 Hapln4 protein_coding Interval_29392 chr11 83627529 83627974 + 0 NA Intergenic Intergenic 6089 ENSMUSG00000051832.7 ENSMUSG00000051832 ENSMUST00000171408 E230016K23Rik processed_transcript Interval_28538 chr11 76592881 76593371 + 0 NA intron (ENSMUSG00000017631.19, intron 1 of 22) protein_coding-intron (ENSMUSG00000017631.19, intron 1 of 3) -8193 ENSMUSG00000024205.7 ENSMUSG00000024205 ENSMUST00000136893 Rpl36-ps2 processed_pseudogene Interval_2588 chr1 40908006 40908341 + 0 NA Intergenic Intergenic -43941 ENSMUSG00000094136.2 ENSMUSG00000094136 ENSMUST00000178542 Gm5973 processed_pseudogene Interval_10736 chr1 173812162 173812696 + 0 NA Intergenic Intergenic -14159 ENSMUSG00000090222.2 ENSMUSG00000090222 ENSMUST00000155076 Ifi203-ps unprocessed_pseudogene Interval_130845 chr5 131251928 131252362 + 0 NA intron (ENSMUSG00000034040.16, intron 1 of 1) protein_coding-intron (ENSMUSG00000034040.16, intron 1 of 10) 55933 ENSMUSG00000034040.16 ENSMUSG00000034040 ENSMUST00000162966 Galnt17 protein_coding Interval_37268 chr12 64020380 64020881 + 0 NA Intergenic Intergenic -49881 ENSMUSG00000113602.1 ENSMUSG00000113602 ENSMUST00000223393 Gm5653 processed_pseudogene Interval_107910 chr3 116733742 116734038 + 0 NA Intergenic Intergenic -21678 ENSMUSG00000027957.13 ENSMUSG00000027957 ENSMUST00000169530 Slc35a3 protein_coding Interval_23760 chr11 25993682 25994512 + 0 NA intron (ENSMUSG00000032985.15, intron 1 of 5) protein_coding-intron (ENSMUSG00000032985.15, intron 1 of 6) -208143 ENSMUSG00000099015.1 ENSMUSG00000099015 ENSMUST00000185114 Mir6372 miRNA Interval_155607 chr8 35118817 35119096 + 0 NA Intergenic Intergenic 14576 ENSMUSG00000097106.1 ENSMUSG00000097106 ENSMUST00000180440 Rpl31-ps23 processed_pseudogene Interval_133160 chr5 150251848 150252077 + 0 NA intron (ENSMUSG00000056602.12, intron 1 of 3) protein_coding-intron (ENSMUSG00000056602.12, intron 2 of 4) 8099 ENSMUSG00000107082.1 ENSMUSG00000107082 ENSMUST00000201709 Gm36378 processed_pseudogene Interval_171158 chr9 114823376 114823869 + 0 NA intron (ENSMUSG00000041012.4, intron 1 of 1) protein_coding-intron (ENSMUSG00000041012.4, intron 1 of 3) -14551 ENSMUSG00000084638.1 ENSMUSG00000084638 ENSMUST00000122689 Gm23889 snRNA Interval_18662 chr10 88884976 88886752 + 0 NA promoter-TSS (ENSMUSG00000020062.7) protein_coding-promoter-TSS (ENSMUSG00000020062.7) -128 ENSMUSG00000020062.7 ENSMUSG00000020062 ENSMUST00000020255 Slc5a8 protein_coding Interval_55066 chr14 77635171 77635949 + 0 NA intron (ENSMUSG00000022012.9, intron 11 of 16) protein_coding-intron (ENSMUSG00000022012.9, intron 13 of 18) -1700 ENSMUSG00000115363.1 ENSMUSG00000115363 ENSMUST00000227098 Gm49003 antisense Interval_169236 chr9 95696376 95696610 + 0 NA exon (ENSMUSG00000015354.8, exon 9 of 9) protein_coding-exon (ENSMUSG00000015354.8, exon 9 of 9) 16187 ENSMUSG00000015354.8 ENSMUSG00000015354 ENSMUST00000151210 Pcolce2 protein_coding Interval_75991 chr17 74213349 74214269 + 0 NA exon (ENSMUSG00000117262.1, exon 1 of 1) processed_pseudogene-exon (ENSMUSG00000117262.1, exon 1 of 1) 1851 ENSMUSG00000117262.1 ENSMUSG00000117262 ENSMUST00000233585 Gm9316 processed_pseudogene Interval_15662 chr10 53251281 53251734 + 0 NA intron (ENSMUSG00000112835.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000112835.1, intron 1 of 2) 16320 ENSMUSG00000112835.1 ENSMUSG00000112835 ENSMUST00000219101 Gm36173 lincRNA Interval_42928 chr13 21453261 21454000 + 0 NA promoter-TSS (ENSMUSG00000022228.14) protein_coding-promoter-TSS (ENSMUSG00000022228.14) 100 ENSMUSG00000022228.14 ENSMUSG00000022228 ENSMUST00000110485 Zscan26 protein_coding Interval_76645 chr17 83086590 83086920 + 0 NA Intergenic Intergenic -8329 ENSMUSG00000117399.1 ENSMUSG00000117399 ENSMUST00000234397 Gm19689 processed_transcript Interval_100399 chr2 168825410 168825943 + 0 NA Intergenic Intergenic 56492 ENSMUSG00000077761.1 ENSMUSG00000077761 ENSMUST00000104573 Gm25214 snoRNA Interval_145099 chr7 30012247 30013619 + 0 NA intron (ENSMUSG00000074221.12, intron 4 of 7) protein_coding-intron (ENSMUSG00000074221.12, intron 4 of 7) 27677 ENSMUSG00000074221.12 ENSMUSG00000074221 ENSMUST00000177931 Zfp568 protein_coding Interval_18407 chr10 85578926 85580157 + 0 NA intron (ENSMUSG00000020042.15, intron 3 of 16) protein_coding-intron (ENSMUSG00000020042.15, intron 3 of 9) -65662 ENSMUSG00000020042.15 ENSMUSG00000020042 ENSMUST00000145433 Btbd11 protein_coding Interval_90087 chr2 27865562 27865913 + 0 NA Intergenic Intergenic 21315 ENSMUSG00000085766.1 ENSMUSG00000085766 ENSMUST00000154246 2810430I11Rik processed_transcript Interval_117057 chr4 119261243 119261492 + 0 NA exon (ENSMUSG00000066058.11, exon 4 of 4) protein_coding-exon (ENSMUSG00000066058.11, exon 4 of 4) -4392 ENSMUSG00000085203.1 ENSMUSG00000085203 ENSMUST00000150252 Gm12927 antisense Interval_44473 chr13 45111163 45111588 + 0 NA intron (ENSMUSG00000113553.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000113553.1, intron 1 of 1) 11418 ENSMUSG00000113553.1 ENSMUSG00000113553 ENSMUST00000221244 Gm40932 lincRNA Interval_62702 chr15 96365612 96365830 + 0 NA intron (ENSMUSG00000033237.19, intron 11 of 20) protein_coding-intron (ENSMUSG00000033237.19, intron 11 of 20) -13093 ENSMUSG00000033237.19 ENSMUSG00000033237 ENSMUST00000176739 Arid2 protein_coding Interval_5932 chr1 93298643 93300377 + 0 NA exon (ENSMUSG00000047793.13, exon 31 of 31) protein_coding-exon (ENSMUSG00000047793.13, exon 31 of 31) 6369 ENSMUSG00000026273.13 ENSMUSG00000026273 ENSMUST00000152307 Mterf4 protein_coding Interval_130511 chr5 128491174 128491588 + 0 NA Intergenic Intergenic 26253 ENSMUSG00000104980.1 ENSMUSG00000104980 ENSMUST00000199120 4930573I07Rik lincRNA Interval_87431 chr19 50270519 50270978 + 0 NA intron (ENSMUSG00000043531.16, intron 6 of 25) protein_coding-intron (ENSMUSG00000043531.16, intron 7 of 26) 123810 ENSMUSG00000110007.2 ENSMUSG00000110007 ENSMUST00000210140 Gm45352 antisense Interval_57474 chr15 11583875 11584626 + 0 NA Intergenic Intergenic -46479 ENSMUSG00000115804.1 ENSMUSG00000115804 ENSMUST00000228129 Gm49107 lincRNA Interval_166769 chr9 62519553 62519791 + 0 NA intron (ENSMUSG00000041729.15, intron 1 of 2) protein_coding-intron (ENSMUSG00000041729.15, intron 1 of 11) 4643 ENSMUSG00000084540.1 ENSMUSG00000084540 ENSMUST00000122591 n-R5s84 rRNA Interval_67208 chr16 44429865 44430914 + 0 NA TTS (ENSMUSG00000071550.14) protein_coding-TTS (ENSMUSG00000071550.14) 35593 ENSMUSG00000071550.14 ENSMUSG00000071550 ENSMUST00000127303 Cfap44 protein_coding Interval_120915 chr4 151595158 151595390 + 0 NA intron (ENSMUSG00000014592.21, intron 3 of 24) protein_coding-intron (ENSMUSG00000014592.21, intron 3 of 23) 218804 ENSMUSG00000085593.1 ENSMUSG00000085593 ENSMUST00000129097 4930589P08Rik antisense Interval_111691 chr4 25896021 25896404 + 0 NA Intergenic Intergenic -27757 ENSMUSG00000084018.1 ENSMUSG00000084018 ENSMUST00000122165 Gm11895 processed_pseudogene Interval_56862 chr14 122490366 122491789 + 0 NA exon (ENSMUSG00000075465.2, exon 1 of 1) lincRNA-exon (ENSMUSG00000075465.2, exon 1 of 1) 491 ENSMUSG00000075465.2 ENSMUSG00000075465 ENSMUST00000100294 Gm10837 lincRNA Interval_31658 chr11 102068607 102069791 + 0 NA intron (ENSMUSG00000017314.12, intron 2 of 2) protein_coding-intron (ENSMUSG00000017314.12, intron 3 of 12) 16539 ENSMUSG00000017314.12 ENSMUSG00000017314 ENSMUST00000132687 Mpp2 protein_coding Interval_5920 chr1 93227306 93228434 + 0 NA intron (ENSMUSG00000084989.3, intron 31 of 31) protein_coding-intron (ENSMUSG00000084989.3, intron 31 of 31) -7981 ENSMUSG00000047793.13 ENSMUSG00000047793 ENSMUST00000165883 Sned1 protein_coding Interval_147321 chr7 65835365 65835699 + 0 NA Intergenic Intergenic 26460 ENSMUSG00000093405.1 ENSMUSG00000093405 ENSMUST00000176744 Gm20684 bidirectional_promoter_lncRNA Interval_3951 chr1 65040615 65041194 + 0 NA Intergenic Intergenic -8157 ENSMUSG00000025955.13 ENSMUSG00000025955 ENSMUST00000160283 Akr1cl protein_coding Interval_166728 chr9 62296763 62296985 + 0 NA Intergenic Intergenic -1628 ENSMUSG00000111193.1 ENSMUSG00000111193 ENSMUST00000216565 Gm35288 lincRNA Interval_108585 chr3 129294751 129295279 + 0 NA intron (ENSMUSG00000028024.14, intron 5 of 8) protein_coding-intron (ENSMUSG00000028024.14, intron 10 of 19) 9746 ENSMUSG00000106417.1 ENSMUSG00000106417 ENSMUST00000198498 Gm42628 processed_pseudogene Interval_107073 chr3 103308083 103310074 + 0 NA intron (ENSMUSG00000033014.12, intron 1 of 18) protein_coding-intron (ENSMUSG00000033014.12, intron 1 of 19) -17008 ENSMUSG00000033014.12 ENSMUSG00000033014 ENSMUST00000197365 Trim33 protein_coding Interval_77829 chr18 4283578 4283925 + 0 NA Intergenic Intergenic 10731 ENSMUSG00000117482.1 ENSMUSG00000117482 ENSMUST00000234061 Gm7400 processed_pseudogene Interval_60015 chr15 63958536 63959078 + 0 NA exon (ENSMUSG00000022378.14, exon 1 of 1) protein_coding-exon (ENSMUSG00000022378.14, exon 1 of 1) 44359 ENSMUSG00000100127.6 ENSMUSG00000100127 ENSMUST00000188344 Gsdmcl-ps transcribed_unprocessed_pseudogene Interval_43150 chr13 24721601 24722082 + 0 NA intron (ENSMUSG00000036006.20, intron 20 of 22) protein_coding-intron (ENSMUSG00000036006.20, intron 20 of 22) -19391 ENSMUSG00000085861.1 ENSMUSG00000085861 ENSMUST00000136906 Armh2 protein_coding Interval_138771 chr6 91732482 91732783 + 0 NA intron (ENSMUSG00000030096.8, intron 2 of 5) protein_coding-intron (ENSMUSG00000030096.8, intron 5 of 14) -17552 ENSMUSG00000030096.8 ENSMUSG00000030096 ENSMUST00000206988 Slc6a6 protein_coding Interval_145863 chr7 40776375 40777458 + 0 NA Intergenic Intergenic 44194 ENSMUSG00000108672.1 ENSMUSG00000108672 ENSMUST00000206420 Gm45008 TEC Interval_110536 chr4 3703637 3703995 + 0 NA intron (ENSMUSG00000042228.14, intron 1 of 1) protein_coding-intron (ENSMUSG00000042228.14, intron 1 of 12) 17210 ENSMUSG00000083186.1 ENSMUSG00000083186 ENSMUST00000121238 Gm11805 processed_pseudogene Interval_127411 chr5 103781530 103782312 + 0 NA intron (ENSMUSG00000029313.18, intron 1 of 12) protein_coding-intron (ENSMUSG00000029313.18, intron 1 of 19) 27357 ENSMUSG00000029313.18 ENSMUSG00000029313 ENSMUST00000152145 Aff1 protein_coding Interval_6704 chr1 118881800 118882006 + 0 NA intron (ENSMUSG00000048402.14, intron 2 of 7) protein_coding-intron (ENSMUSG00000048402.14, intron 3 of 13) 71767 ENSMUSG00000100040.1 ENSMUSG00000100040 ENSMUST00000190981 Gm28467 processed_pseudogene Interval_84479 chr19 11743471 11743804 + 0 NA Intergenic Intergenic -3917 ENSMUSG00000024682.3 ENSMUSG00000024682 ENSMUST00000025585 Cblif protein_coding Interval_65005 chr16 17804032 17805128 + 0 NA promoter-TSS (ENSMUSG00000012017.4) protein_coding-promoter-TSS (ENSMUSG00000012017.4) 7265 ENSMUSG00000012017.4 ENSMUSG00000012017 ENSMUST00000231301 Scarf2 protein_coding Interval_152805 chr7 137909625 137909994 + 0 NA Intergenic Intergenic -152197 ENSMUSG00000109834.1 ENSMUSG00000109834 ENSMUST00000209641 Gm5650 processed_pseudogene Interval_7709 chr1 133201117 133201422 + 0 NA intron (ENSMUSG00000041757.17, intron 1 of 22) protein_coding-intron (ENSMUSG00000041757.17, intron 1 of 22) -55273 ENSMUSG00000041757.17 ENSMUSG00000041757 ENSMUST00000190208 Plekha6 protein_coding Interval_155763 chr8 37031090 37031519 + 0 NA Intergenic Intergenic 4211 ENSMUSG00000110158.1 ENSMUSG00000110158 ENSMUST00000210775 Gm45690 processed_pseudogene Interval_5970 chr1 93618763 93619278 + 0 NA TTS (ENSMUSG00000026277.14) protein_coding-TTS (ENSMUSG00000026277.14) -16173 ENSMUSG00000100927.1 ENSMUSG00000100927 ENSMUST00000190971 Gm28536 antisense Interval_36341 chr12 41667580 41668534 + 0 NA intron (ENSMUSG00000056899.10, intron 4 of 5) protein_coding-intron (ENSMUSG00000056899.10, intron 5 of 6) -16337 ENSMUSG00000113438.1 ENSMUSG00000113438 ENSMUST00000221651 Gm47369 processed_pseudogene Interval_66410 chr16 33708105 33708478 + 0 NA intron (ENSMUSG00000075254.12, intron 2 of 16) protein_coding-intron (ENSMUSG00000075254.12, intron 2 of 16) 23921 ENSMUSG00000075254.12 ENSMUSG00000075254 ENSMUST00000146518 Heg1 protein_coding Interval_9506 chr1 158208600 158209404 + 0 NA Intergenic Intergenic 147227 ENSMUSG00000004031.13 ENSMUSG00000004031 ENSMUST00000192709 Brinp2 protein_coding Interval_144357 chr7 24655572 24655852 + 0 NA Intergenic Intergenic -5582 ENSMUSG00000108470.1 ENSMUSG00000108470 ENSMUST00000206756 Gm4598 lincRNA Interval_108378 chr3 126402325 126403124 + 0 NA intron (ENSMUSG00000046561.9, intron 1 of 1) protein_coding-intron (ENSMUSG00000046561.9, intron 1 of 1) 36545 ENSMUSG00000090427.1 ENSMUSG00000090427 ENSMUST00000172051 Gm17225 antisense Interval_126504 chr5 89244524 89245304 + 0 NA Intergenic Intergenic 190714 ENSMUSG00000035540.12 ENSMUSG00000035540 ENSMUST00000200534 Gc protein_coding Interval_84491 chr19 11818192 11820490 + 0 NA promoter-TSS (ENSMUSG00000041488.16) protein_coding-promoter-TSS (ENSMUSG00000041488.16) -448 ENSMUSG00000041488.16 ENSMUSG00000041488 ENSMUST00000209304 Stx3 protein_coding Interval_154421 chr8 16082936 16083316 + 0 NA intron (ENSMUSG00000060924.15, intron 31 of 33) protein_coding-intron (ENSMUSG00000060924.15, intron 31 of 69) 85712 ENSMUSG00000093142.1 ENSMUSG00000093142 ENSMUST00000175401 Mir3106 miRNA Interval_144334 chr7 24533123 24534686 + 0 NA exon (ENSMUSG00000041037.8, exon 3 of 3) protein_coding-exon (ENSMUSG00000041037.8, exon 3 of 3) 3215 ENSMUSG00000041037.8 ENSMUSG00000041037 ENSMUST00000049020 Irgq protein_coding Interval_146708 chr7 49600974 49601873 + 0 NA intron (ENSMUSG00000052512.17, intron 37 of 38) protein_coding-intron (ENSMUSG00000052512.17, intron 36 of 37) 35426 ENSMUSG00000030507.6 ENSMUSG00000030507 ENSMUST00000032717 Dbx1 protein_coding Interval_5205 chr1 86447768 86448318 + 0 NA Intergenic Intergenic 21714 ENSMUSG00000036574.5 ENSMUSG00000036574 ENSMUST00000046004 Tex44 protein_coding Interval_148358 chr7 80745309 80746968 + 0 NA intron (ENSMUSG00000030536.10, intron 15 of 37) protein_coding-intron (ENSMUSG00000030536.10, intron 15 of 37) -5684 ENSMUSG00000108321.1 ENSMUSG00000108321 ENSMUST00000205608 Gm44649 antisense Interval_3927 chr1 64876239 64876513 + 0 NA intron (ENSMUSG00000051344.13, intron 4 of 4) protein_coding-intron (ENSMUSG00000051344.13, intron 5 of 7) -39612 ENSMUSG00000051344.13 ENSMUSG00000051344 ENSMUST00000134097 Plekhm3 protein_coding Interval_118214 chr4 129568577 129568802 + 0 NA intron (ENSMUSG00000000409.14, intron 1 of 12) protein_coding-intron (ENSMUSG00000000409.14, intron 1 of 12) 8768 ENSMUSG00000050493.8 ENSMUSG00000050493 ENSMUST00000052835 Fam167b protein_coding Interval_118845 chr4 134016375 134019412 + 0 NA promoter-TSS (ENSMUSG00000087288.1) processed_transcript-promoter-TSS (ENSMUSG00000087288.1) -254 ENSMUSG00000087288.1 ENSMUSG00000087288 ENSMUST00000137962 Gm13061 processed_transcript Interval_76816 chr17 84264159 84264539 + 0 NA intron (ENSMUSG00000024251.10, intron 5 of 12) protein_coding-intron (ENSMUSG00000024251.10, intron 30 of 37) 23398 ENSMUSG00000065732.1 ENSMUSG00000065732 ENSMUST00000083798 Gm24492 snRNA Interval_134837 chr6 32093108 32094464 + 0 NA Intergenic Intergenic -18357 ENSMUSG00000085616.1 ENSMUSG00000085616 ENSMUST00000140465 Gm13850 lincRNA Interval_16269 chr10 61830902 61832069 + 0 NA Intergenic Intergenic 17726 ENSMUSG00000058806.15 ENSMUSG00000058806 ENSMUST00000153120 Col13a1 protein_coding Interval_79557 chr18 33753447 33754298 + 0 NA Intergenic Intergenic -41067 ENSMUSG00000087590.2 ENSMUSG00000087590 ENSMUST00000179138 Epb41l4aos lincRNA Interval_125786 chr5 74159393 74159825 + 0 NA Intergenic Intergenic 16441 ENSMUSG00000106735.1 ENSMUSG00000106735 ENSMUST00000200757 A330058E17Rik TEC Interval_65334 chr16 21638244 21639149 + 0 NA intron (ENSMUSG00000033653.18, intron 1 of 2) protein_coding-intron (ENSMUSG00000033653.18, intron 44 of 45) 55884 ENSMUSG00000043391.10 ENSMUSG00000043391 ENSMUST00000232634 2510009E07Rik protein_coding Interval_21657 chr11 3502106 3502736 + 0 NA promoter-TSS (ENSMUSG00000034570.12) protein_coding-promoter-TSS (ENSMUSG00000034570.12) 2378 ENSMUSG00000034570.12 ENSMUSG00000034570 ENSMUST00000183684 Inpp5j protein_coding Interval_127668 chr5 106453269 106454208 + 0 NA intron (ENSMUSG00000034384.11, intron 2 of 2) protein_coding-intron (ENSMUSG00000034384.11, intron 2 of 2) 4428 ENSMUSG00000034384.11 ENSMUSG00000034384 ENSMUST00000086795 Barhl2 protein_coding Interval_92752 chr2 65130834 65131474 + 0 NA intron (ENSMUSG00000034903.18, intron 5 of 14) protein_coding-intron (ENSMUSG00000034903.18, intron 4 of 12) -107602 ENSMUSG00000086881.1 ENSMUSG00000086881 ENSMUST00000137582 Gm13594 antisense Interval_73472 chr17 37728218 37728502 + 0 NA Intergenic Intergenic 6552 ENSMUSG00000063994.5 ENSMUSG00000063994 ENSMUST00000077498 Olfr120 protein_coding Interval_157550 chr8 71375007 71376177 + 0 NA TTS (ENSMUSG00000002393.14) protein_coding-TTS (ENSMUSG00000002393.14) 198 ENSMUSG00000002393.14 ENSMUSG00000002393 ENSMUST00000137058 Nr2f6 protein_coding Interval_99608 chr2 163510105 163511497 + 0 NA intron (ENSMUSG00000017950.16, intron 1 of 2) antisense-intron (ENSMUSG00000046840.16, intron 1 of 2) -3715 ENSMUSG00000088408.1 ENSMUSG00000088408 ENSMUST00000157783 Gm25881 snRNA Interval_138142 chr6 85445580 85445786 + 0 NA TTS (ENSMUSG00000033706.13) protein_coding-TTS (ENSMUSG00000033706.13) 5573 ENSMUSG00000030008.9 ENSMUSG00000030008 ENSMUST00000122907 Pradc1 protein_coding Interval_64152 chr16 8744194 8745151 + 0 NA intron (ENSMUSG00000022710.17, intron 2 of 31) protein_coding-intron (ENSMUSG00000022710.17, intron 2 of 31) 21604 ENSMUSG00000084737.1 ENSMUSG00000084737 ENSMUST00000122788 Gm25805 snRNA Interval_95128 chr2 104109246 104110742 + 0 NA intron (ENSMUSG00000032679.12, intron 3 of 4) protein_coding-intron (ENSMUSG00000032679.12, intron 2 of 3) -12775 ENSMUSG00000032671.5 ENSMUSG00000032671 ENSMUST00000040374 A930018P22Rik protein_coding Interval_68617 chr16 81480561 81482163 + 0 NA intron (ENSMUSG00000022762.18, intron 1 of 3) protein_coding-intron (ENSMUSG00000022762.18, intron 8 of 15) 15739 ENSMUSG00000022762.18 ENSMUSG00000022762 ENSMUST00000232550 Ncam2 protein_coding Interval_152169 chr7 130340748 130341758 + 0 NA intron (ENSMUSG00000030849.18, intron 2 of 6) protein_coding-intron (ENSMUSG00000030849.18, intron 2 of 6) 13109 ENSMUSG00000082988.3 ENSMUSG00000082988 ENSMUST00000121836 Gm5903 processed_pseudogene Interval_112945 chr4 46328808 46329589 + 0 NA intron (ENSMUSG00000087383.7, intron 2 of 2) antisense-intron (ENSMUSG00000087383.7, intron 2 of 4) 1902 ENSMUSG00000080816.1 ENSMUSG00000080816 ENSMUST00000119110 Gm12447 processed_pseudogene Interval_140198 chr6 115335195 115337260 + 0 NA Intergenic Intergenic -47472 ENSMUSG00000000440.12 ENSMUSG00000000440 ENSMUST00000203896 Pparg protein_coding Interval_46588 chr13 67413770 67414279 + 0 NA intron (ENSMUSG00000055560.8, intron 1 of 2) protein_coding-intron (ENSMUSG00000055560.8, intron 1 of 3) 7384 ENSMUSG00000055560.8 ENSMUSG00000055560 ENSMUST00000224496 Zfp459 protein_coding Interval_154253 chr8 13823188 13824491 + 0 NA Intergenic Intergenic 14550 ENSMUSG00000057116.5 ENSMUSG00000057116 ENSMUST00000071308 AF366264 protein_coding Interval_59144 chr15 44753441 44754389 + 0 NA intron (ENSMUSG00000060530.2, intron 1 of 9) protein_coding-intron (ENSMUSG00000022340.15, intron 1 of 7) 1635 ENSMUSG00000060530.2 ENSMUSG00000060530 ENSMUST00000081361 A930017M01Rik transcribed_processed_pseudogene Interval_95712 chr2 114587483 114587871 + 0 NA intron (ENSMUSG00000057147.13, intron 3 of 6) protein_coding-intron (ENSMUSG00000057147.13, intron 3 of 7) -66748 ENSMUSG00000084785.1 ENSMUSG00000084785 ENSMUST00000153726 Gm13972 processed_transcript Interval_94501 chr2 91705305 91707081 + 0 NA promoter-TSS (ENSMUSG00000027244.14) protein_coding-promoter-TSS (ENSMUSG00000027244.14) -4724 ENSMUSG00000027243.8 ENSMUSG00000027243 ENSMUST00000111322 Harbi1 protein_coding Interval_105385 chr3 85886923 85888552 + 0 NA promoter-TSS (ENSMUSG00000031286.6) protein_coding-promoter-TSS (ENSMUSG00000031286.6) 46 ENSMUSG00000106508.1 ENSMUSG00000106508 ENSMUST00000195991 4933425M03Rik TEC Interval_105236 chr3 84071336 84072000 + 0 NA Intergenic Intergenic -8216 ENSMUSG00000103261.1 ENSMUSG00000103261 ENSMUST00000192340 Gm36981 TEC Interval_112935 chr4 46185274 46187036 + 0 NA promoter-TSS (ENSMUSG00000028329.13) protein_coding-promoter-TSS (ENSMUSG00000028329.13) 10149 ENSMUSG00000028329.13 ENSMUSG00000028329 ENSMUST00000130051 Xpa protein_coding Interval_33375 chr11 116190272 116190471 + 0 NA promoter-TSS (ENSMUSG00000020777.16) protein_coding-promoter-TSS (ENSMUSG00000020777.16) -8588 ENSMUSG00000020778.12 ENSMUSG00000020778 ENSMUST00000135460 Ten1 protein_coding Interval_96201 chr2 120506725 120508888 + 0 NA exon (ENSMUSG00000027288.16, exon 22 of 22) protein_coding-exon (ENSMUSG00000027288.16, exon 22 of 22) 32054 ENSMUSG00000027288.16 ENSMUSG00000027288 ENSMUST00000147353 Zfp106 protein_coding Interval_127052 chr5 99958413 99960355 + 0 NA exon (ENSMUSG00000000568.15, exon 9 of 9) protein_coding-exon (ENSMUSG00000000568.15, exon 9 of 9) -18302 ENSMUSG00000091623.2 ENSMUSG00000091623 ENSMUST00000046721 Gm17092 antisense Interval_31307 chr11 99549510 99549734 + 0 NA TTS (ENSMUSG00000069722.4) protein_coding-TTS (ENSMUSG00000069722.4) 1243 ENSMUSG00000069722.4 ENSMUSG00000069722 ENSMUST00000092700 Krtap3-3 protein_coding Interval_7875 chr1 134325200 134325703 + 0 NA intron (ENSMUSG00000026458.13, intron 8 of 27) protein_coding-intron (ENSMUSG00000026458.13, intron 8 of 28) -20643 ENSMUSG00000026458.13 ENSMUSG00000026458 ENSMUST00000186553 Ppfia4 protein_coding Interval_107180 chr3 104376924 104377423 + 0 NA Intergenic Intergenic -10560 ENSMUSG00000022187.2 ENSMUSG00000022187 ENSMUST00000056145 Gm5546 lincRNA Interval_115963 chr4 106628154 106629589 + 0 NA intron (ENSMUSG00000034919.2, intron 1 of 6) protein_coding-intron (ENSMUSG00000034919.2, intron 1 of 6) -7106 ENSMUSG00000034919.2 ENSMUSG00000034919 ENSMUST00000136505 Ttc22 protein_coding Interval_101074 chr2 174936482 174936910 + 0 NA Intergenic Intergenic -73623 ENSMUSG00000078906.9 ENSMUSG00000078906 ENSMUST00000109070 Gm14444 protein_coding Interval_48567 chr13 100375644 100375851 + 0 NA intron (ENSMUSG00000082956.4, intron 2 of 12) unprocessed_pseudogene-intron (ENSMUSG00000082956.4, intron 2 of 12) 3213 ENSMUSG00000082956.4 ENSMUSG00000082956 ENSMUST00000118082 Naip3 unprocessed_pseudogene Interval_161724 chr8 122351220 122351466 + 0 NA intron (ENSMUSG00000092329.1, intron 1 of 15) protein_coding-intron (ENSMUSG00000092329.1, intron 1 of 15) 9403 ENSMUSG00000039079.1 ENSMUSG00000039079 ENSMUST00000044123 Trhr2 protein_coding Interval_161915 chr8 123737212 123737528 + 0 NA intron (ENSMUSG00000110599.1, intron 3 of 3) protein_coding-intron (ENSMUSG00000092329.1, intron 1 of 15) -2228 ENSMUSG00000110467.1 ENSMUSG00000110467 ENSMUST00000212860 Gm45781 lincRNA Interval_71911 chr17 26951622 26952640 + 0 NA promoter-TSS (ENSMUSG00000067629.13) protein_coding-promoter-TSS (ENSMUSG00000067629.13) -755 ENSMUSG00000067629.13 ENSMUSG00000067629 ENSMUST00000202208 Syngap1 protein_coding Interval_7924 chr1 134604035 134604499 + 0 NA intron (ENSMUSG00000042207.17, intron 10 of 25) protein_coding-intron (ENSMUSG00000042207.17, intron 10 of 26) -18533 ENSMUSG00000042207.17 ENSMUSG00000042207 ENSMUST00000191572 Kdm5b protein_coding Interval_159956 chr8 105397072 105398182 + 0 NA intron (ENSMUSG00000051648.13, intron 2 of 15) protein_coding-intron (ENSMUSG00000051648.13, intron 2 of 16) 15829 ENSMUSG00000051648.13 ENSMUSG00000051648 ENSMUST00000168888 Kctd19 protein_coding Interval_127212 chr5 101381155 101381933 + 0 NA Intergenic Intergenic 75966 ENSMUSG00000105965.1 ENSMUSG00000105965 ENSMUST00000197114 Cycs-ps2 processed_pseudogene Interval_52261 chr14 41121060 41121661 + 0 NA exon (ENSMUSG00000037798.7, exon 7 of 9) protein_coding-exon (ENSMUSG00000037798.7, exon 7 of 9) -10428 ENSMUSG00000021789.14 ENSMUSG00000021789 ENSMUST00000170719 Sftpa1 protein_coding Interval_83641 chr19 3419321 3419688 + 0 NA Intergenic Intergenic -4960 ENSMUSG00000024907.7 ENSMUSG00000024907 ENSMUST00000025842 Gal protein_coding Interval_160774 chr8 112072130 112073016 + 0 NA Intergenic Intergenic 10068 ENSMUSG00000065700.1 ENSMUSG00000065700 ENSMUST00000083766 Gm22827 snRNA Interval_20557 chr10 118977886 118978589 + 0 NA Intergenic Intergenic 43433 ENSMUSG00000112540.1 ENSMUSG00000112540 ENSMUST00000217840 Gm47461 lincRNA Interval_113022 chr4 46975592 46975849 + 0 NA intron (ENSMUSG00000039809.10, intron 1 of 18) protein_coding-intron (ENSMUSG00000039809.10, intron 1 of 18) 35061 ENSMUSG00000048824.7 ENSMUSG00000048824 ENSMUST00000135777 Gm568 lincRNA Interval_108384 chr3 126462829 126463580 + 0 NA Intergenic Intergenic 15461 ENSMUSG00000105233.1 ENSMUSG00000105233 ENSMUST00000197129 Gm20568 processed_pseudogene Interval_70945 chr17 16614449 16614690 + 0 NA Intergenic Intergenic 55617 ENSMUSG00000116864.1 ENSMUSG00000116864 ENSMUST00000231447 Gm3320 processed_pseudogene Interval_60067 chr15 64421388 64422103 + 0 NA intron (ENSMUSG00000115169.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000115169.1, intron 1 of 2) 25366 ENSMUSG00000115169.1 ENSMUSG00000115169 ENSMUST00000226656 Gm30563 lincRNA Interval_132146 chr5 142947604 142948080 + 0 NA Intergenic Intergenic -12534 ENSMUSG00000029581.14 ENSMUSG00000029581 ENSMUST00000135293 Fscn1 protein_coding Interval_130656 chr5 129510026 129510227 + 0 NA intron (ENSMUSG00000029439.14, intron 2 of 2) protein_coding-intron (ENSMUSG00000029439.14, intron 4 of 17) 5785 ENSMUSG00000029439.14 ENSMUSG00000029439 ENSMUST00000196873 Sfswap protein_coding Interval_120430 chr4 148572517 148572911 + 0 NA intron (ENSMUSG00000017264.16, intron 4 of 8) protein_coding-intron (ENSMUSG00000017264.16, intron 14 of 24) -2838 ENSMUSG00000082860.1 ENSMUSG00000082860 ENSMUST00000120110 Gm13204 processed_pseudogene Interval_52688 chr14 48608798 48609010 + 0 NA Intergenic Intergenic 18305 ENSMUSG00000115636.1 ENSMUSG00000115636 ENSMUST00000228323 Gm49120 lincRNA Interval_10716 chr1 173437930 173438130 + 0 NA intron (ENSMUSG00000037860.15, intron 2 of 5) protein_coding-intron (ENSMUSG00000037860.15, intron 5 of 11) -17324 ENSMUSG00000037860.15 ENSMUSG00000037860 ENSMUST00000135370 Aim2 protein_coding Interval_78170 chr18 9718691 9718918 + 0 NA exon (ENSMUSG00000117597.1, exon 1 of 1) TEC-exon (ENSMUSG00000117597.1, exon 1 of 1) 2365 ENSMUSG00000117597.1 ENSMUSG00000117597 ENSMUST00000234755 Gm50078 TEC Interval_98505 chr2 152842275 152843064 + 0 NA Intergenic Intergenic -5295 ENSMUSG00000027469.16 ENSMUSG00000027469 ENSMUST00000143740 Tpx2 protein_coding Interval_57400 chr15 10596202 10596871 + 0 NA intron (ENSMUSG00000022246.14, intron 5 of 16) protein_coding-intron (ENSMUSG00000022246.14, intron 5 of 17) -3801 ENSMUSG00000115667.1 ENSMUSG00000115667 ENSMUST00000228059 Gm10389 antisense Interval_124578 chr5 51591634 51592071 + 0 NA Intergenic Intergenic -37961 ENSMUSG00000029167.13 ENSMUSG00000029167 ENSMUST00000127135 Ppargc1a protein_coding Interval_156999 chr8 64183480 64183741 + 0 NA intron (ENSMUSG00000053626.5, intron 1 of 8) protein_coding-intron (ENSMUSG00000053626.5, intron 1 of 20) 22205 ENSMUSG00000088132.1 ENSMUSG00000088132 ENSMUST00000157507 Gm22586 rRNA Interval_111440 chr4 21678198 21680120 + 0 NA TTS (ENSMUSG00000040478.14) protein_coding-TTS (ENSMUSG00000040478.14) 6622 ENSMUSG00000040478.14 ENSMUSG00000040478 ENSMUST00000139568 Prdm13 protein_coding Interval_47446 chr13 84347631 84349564 + 0 NA Intergenic Intergenic -8484 ENSMUSG00000098245.1 ENSMUSG00000098245 ENSMUST00000182385 Gm26927 processed_pseudogene Interval_101464 chr2 181580752 181582393 + 0 NA promoter-TSS (ENSMUSG00000089917.7) protein_coding-promoter-TSS (ENSMUSG00000089917.7) 3092 ENSMUSG00000010492.10 ENSMUSG00000010492 ENSMUST00000136759 Uckl1os antisense Interval_39326 chr12 86748743 86749893 + 0 NA intron (ENSMUSG00000059114.8, intron 9 of 13) protein_coding-intron (ENSMUSG00000059114.8, intron 9 of 14) 14949 ENSMUSG00000059114.8 ENSMUSG00000059114 ENSMUST00000223197 Lrrc74a protein_coding Interval_165868 chr9 53959160 53959388 + 0 NA intron (ENSMUSG00000041986.16, intron 1 of 8) protein_coding-intron (ENSMUSG00000041986.16, intron 1 of 10) -32248 ENSMUSG00000041986.16 ENSMUSG00000041986 ENSMUST00000213111 Elmod1 protein_coding Interval_128898 chr5 115944032 115946151 + 0 NA promoter-TSS (ENSMUSG00000029516.19) protein_coding-promoter-TSS (ENSMUSG00000029516.19) 42661 ENSMUSG00000107263.1 ENSMUSG00000107263 ENSMUST00000201457 Gm42471 TEC Interval_146118 chr7 44082660 44083146 + 0 NA Intergenic Intergenic -3853 ENSMUSG00000108498.1 ENSMUSG00000108498 ENSMUST00000205292 Gm45026 unprocessed_pseudogene Interval_86945 chr19 45127376 45127595 + 0 NA Intergenic Intergenic -23984 ENSMUSG00000025215.10 ENSMUSG00000025215 ENSMUST00000174617 Tlx1 protein_coding Interval_28014 chr11 72220924 72221775 + 0 NA Intergenic Intergenic 6177 ENSMUSG00000053574.5 ENSMUSG00000053574 ENSMUST00000124762 4930563E22Rik protein_coding Interval_122364 chr5 21708717 21709463 + 0 NA Intergenic Intergenic -7696 ENSMUSG00000044968.16 ENSMUSG00000044968 ENSMUST00000060899 Napepld protein_coding Interval_157408 chr8 70178576 70179524 + 0 NA TTS (ENSMUSG00000002342.17) protein_coding-TTS (ENSMUSG00000002342.17) 6642 ENSMUSG00000002342.17 ENSMUSG00000002342 ENSMUST00000143543 Tmem161a protein_coding Interval_126112 chr5 77474217 77474601 + 0 NA Intergenic Intergenic 8921 ENSMUSG00000107232.1 ENSMUSG00000107232 ENSMUST00000201654 1700017L05Rik lincRNA Interval_122400 chr5 22009573 22009830 + 0 NA intron (ENSMUSG00000042453.14, intron 24 of 24) protein_coding-intron (ENSMUSG00000042453.14, intron 24 of 63) -51715 ENSMUSG00000105766.1 ENSMUSG00000105766 ENSMUST00000198176 Gm19666 TEC Interval_47975 chr13 94803328 94803773 + 0 NA intron (ENSMUSG00000042043.6, intron 1 of 3) protein_coding-intron (ENSMUSG00000042043.6, intron 1 of 3) -14184 ENSMUSG00000042043.6 ENSMUSG00000042043 ENSMUST00000220561 Tbca protein_coding Interval_21884 chr11 4973190 4973767 + 0 NA Intergenic Intergenic -25414 ENSMUSG00000020396.8 ENSMUSG00000020396 ENSMUST00000093369 Nefh protein_coding Interval_88350 chr2 4277224 4277599 + 0 NA intron (ENSMUSG00000026657.17, intron 1 of 22) protein_coding-intron (ENSMUSG00000026657.17, intron 1 of 22) -8149 ENSMUSG00000026657.17 ENSMUSG00000026657 ENSMUST00000176864 Frmd4a protein_coding Interval_76823 chr17 84331148 84332376 + 0 NA intron (ENSMUSG00000024251.10, intron 13 of 14) protein_coding-intron (ENSMUSG00000024251.10, intron 28 of 37) -18083 ENSMUSG00000024251.10 ENSMUSG00000024251 ENSMUST00000234313 Thada protein_coding Interval_70328 chr17 8524178 8526535 + 0 NA promoter-TSS (ENSMUSG00000023868.17) protein_coding-promoter-TSS (ENSMUSG00000023868.17) 41594 ENSMUSG00000099104.1 ENSMUSG00000099104 ENSMUST00000184183 Gm17087 protein_coding Interval_49319 chr13 110715970 110716469 + 0 NA Intergenic Intergenic 32307 ENSMUSG00000114775.1 ENSMUSG00000114775 ENSMUST00000225669 Gm33172 lincRNA Interval_47560 chr13 88612783 88613804 + 0 NA Intergenic Intergenic 66077 ENSMUSG00000114915.1 ENSMUSG00000114915 ENSMUST00000225215 Gm5667 processed_pseudogene Interval_20329 chr10 116919856 116921218 + 0 NA promoter-TSS (ENSMUSG00000064181.6) protein_coding-promoter-TSS (ENSMUSG00000064181.6) -23618 ENSMUSG00000034057.8 ENSMUSG00000034057 ENSMUST00000048229 Myrfl protein_coding Interval_41954 chr13 5440514 5440887 + 0 NA Intergenic Intergenic -14209 ENSMUSG00000114098.1 ENSMUSG00000114098 ENSMUST00000223343 Gm40660 lincRNA Interval_150320 chr7 109579001 109580164 + 0 NA intron (ENSMUSG00000031024.13, intron 2 of 2) protein_coding-intron (ENSMUSG00000031024.13, intron 1 of 19) 37171 ENSMUSG00000031024.13 ENSMUSG00000031024 ENSMUST00000208734 Denn2b protein_coding Interval_112033 chr4 33363589 33364580 + 0 NA intron (ENSMUSG00000028274.17, intron 10 of 15) protein_coding-intron (ENSMUSG00000028274.17, intron 10 of 15) 39186 ENSMUSG00000028274.17 ENSMUSG00000028274 ENSMUST00000146870 Rngtt protein_coding Interval_96514 chr2 125214566 125214912 + 0 NA intron (ENSMUSG00000027202.12, intron 21 of 26) protein_coding-intron (ENSMUSG00000027202.12, intron 21 of 26) 2773 ENSMUSG00000086416.1 ENSMUSG00000086416 ENSMUST00000123574 Gm14002 antisense Interval_30746 chr11 96240192 96240816 + 0 NA Intergenic Intergenic -8129 ENSMUSG00000083337.1 ENSMUSG00000083337 ENSMUST00000119837 Gm11539 processed_pseudogene Interval_128340 chr5 112628850 112629066 + 0 NA Intergenic Intergenic -11377 ENSMUSG00000105735.1 ENSMUSG00000105735 ENSMUST00000195895 4933415J04Rik TEC Interval_76557 chr17 81064278 81065401 + 0 NA intron (ENSMUSG00000024246.9, intron 1 of 10) protein_coding-intron (ENSMUSG00000024246.9, intron 1 of 9) 243 ENSMUSG00000024246.9 ENSMUSG00000024246 ENSMUST00000234801 Thumpd2 protein_coding Interval_106822 chr3 101109005 101112414 + 0 NA promoter-TSS (ENSMUSG00000027864.9) protein_coding-promoter-TSS (ENSMUSG00000027864.9) -23316 ENSMUSG00000105717.1 ENSMUSG00000105717 ENSMUST00000200367 Gm43465 sense_intronic Interval_9891 chr1 163849104 163849724 + 0 NA intron (ENSMUSG00000026585.13, intron 11 of 20) protein_coding-intron (ENSMUSG00000026585.13, intron 11 of 19) 69831 ENSMUSG00000026585.13 ENSMUSG00000026585 ENSMUST00000027877 Kifap3 protein_coding Interval_78956 chr18 22877519 22878444 + 0 NA intron (ENSMUSG00000041923.15, intron 5 of 9) protein_coding-intron (ENSMUSG00000041923.15, intron 5 of 10) 160958 ENSMUSG00000041923.15 ENSMUSG00000041923 ENSMUST00000097652 Nol4 protein_coding Interval_79730 chr18 34776666 34777874 + 0 NA exon (ENSMUSG00000038773.11, exon 1 of 24) protein_coding-exon (ENSMUSG00000038773.11, exon 1 of 24) 17697 ENSMUSG00000034300.17 ENSMUSG00000034300 ENSMUST00000235929 Fam53c protein_coding Interval_159629 chr8 95862608 95865329 + 0 NA TTS (ENSMUSG00000031672.8) protein_coding-TTS (ENSMUSG00000031672.8) -6846 ENSMUSG00000110711.1 ENSMUSG00000110711 ENSMUST00000212190 Gm45760 TEC Interval_41455 chr12 114343956 114344177 + 0 NA Intergenic Intergenic 7929 ENSMUSG00000103340.1 ENSMUSG00000103340 ENSMUST00000194912 Ighv1-1 IG_V_pseudogene Interval_113340 chr4 53573120 53573482 + 0 NA intron (ENSMUSG00000028412.17, intron 10 of 10) protein_coding-intron (ENSMUSG00000028412.17, intron 15 of 15) -8604 ENSMUSG00000084970.1 ENSMUSG00000084970 ENSMUST00000138377 1700060J05Rik antisense Interval_79741 chr18 34827628 34827857 + 0 NA intron (ENSMUSG00000038773.11, intron 15 of 22) protein_coding-intron (ENSMUSG00000038773.11, intron 16 of 23) -12847 ENSMUSG00000038555.7 ENSMUSG00000038555 ENSMUST00000043484 Reep2 protein_coding Interval_29937 chr11 87883157 87884108 + 0 NA Intergenic Intergenic 8636 ENSMUSG00000093839.2 ENSMUSG00000093839 ENSMUST00000049743 Olfr462 protein_coding Interval_75538 chr17 67869637 67870624 + 0 NA intron (ENSMUSG00000024043.13, intron 3 of 7) protein_coding-intron (ENSMUSG00000024043.13, intron 9 of 17) 2918 ENSMUSG00000024043.13 ENSMUSG00000024043 ENSMUST00000170581 Arhgap28 protein_coding Interval_38100 chr12 75647875 75649606 + 0 NA intron (ENSMUSG00000045690.8, intron 1 of 2) protein_coding-intron (ENSMUSG00000045690.8, intron 1 of 1) -17422 ENSMUSG00000118552.1 ENSMUSG00000118552 ENSMUST00000238938 AC124742.1 protein_coding Interval_135560 chr6 40415959 40416192 + 0 NA intron (ENSMUSG00000037172.14, intron 4 of 8) protein_coding-intron (ENSMUSG00000037172.14, intron 4 of 7) 15333 ENSMUSG00000037172.14 ENSMUSG00000037172 ENSMUST00000200994 Dennd11 protein_coding Interval_71905 chr17 26916572 26917552 + 0 NA promoter-TSS (ENSMUSG00000024301.10) protein_coding-promoter-TSS (ENSMUSG00000024301.10) -29 ENSMUSG00000024301.10 ENSMUSG00000024301 ENSMUST00000235206 Kifc5b protein_coding Interval_30561 chr11 95119918 95121830 + 0 NA intron (ENSMUSG00000001510.8, intron 1 of 2) protein_coding-intron (ENSMUSG00000001510.8, intron 1 of 2) 755 ENSMUSG00000001510.8 ENSMUSG00000001510 ENSMUST00000092768 Dlx3 protein_coding Interval_98267 chr2 150660335 150661363 + 0 NA intron (ENSMUSG00000027452.11, intron 1 of 4) protein_coding-intron (ENSMUSG00000027452.11, intron 1 of 13) -6645 ENSMUSG00000087406.1 ENSMUSG00000087406 ENSMUST00000145525 E130215H24Rik processed_transcript Interval_16859 chr10 69314329 69314980 + 0 NA exon (ENSMUSG00000112798.1, exon 3 of 4) lincRNA-exon (ENSMUSG00000112798.1, exon 3 of 4) 2515 ENSMUSG00000112798.1 ENSMUSG00000112798 ENSMUST00000217861 Gm40685 lincRNA Interval_91536 chr2 41672018 41672301 + 0 NA intron (ENSMUSG00000049252.17, intron 3 of 62) protein_coding-intron (ENSMUSG00000049252.17, intron 6 of 90) 316670 ENSMUSG00000081999.3 ENSMUSG00000081999 ENSMUST00000120980 Gm13461 processed_pseudogene Interval_91228 chr2 36093879 36094110 + 0 NA TTS (ENSMUSG00000026890.19) protein_coding-TTS (ENSMUSG00000026890.19) -6496 ENSMUSG00000098312.1 ENSMUSG00000098312 ENSMUST00000185171 Gm27953 misc_RNA Interval_61001 chr15 78629012 78629690 + 0 NA Intergenic Intergenic 32298 ENSMUSG00000018008.8 ENSMUSG00000018008 ENSMUST00000230583 Cyth4 protein_coding Interval_97358 chr2 135361619 135362543 + 0 NA intron (ENSMUSG00000051177.16, intron 24 of 32) protein_coding-intron (ENSMUSG00000051177.16, intron 24 of 31) -146465 ENSMUSG00000085247.1 ENSMUSG00000085247 ENSMUST00000138303 4930545L23Rik antisense Interval_93241 chr2 71388887 71389966 + 0 NA intron (ENSMUSG00000027018.11, intron 1 of 10) protein_coding-intron (ENSMUSG00000027018.11, intron 1 of 10) -21893 ENSMUSG00000027010.16 ENSMUSG00000027010 ENSMUST00000146653 Slc25a12 protein_coding Interval_49993 chr13 119408036 119409934 + 0 NA promoter-TSS (ENSMUSG00000025453.18) protein_coding-promoter-TSS (ENSMUSG00000025453.18) 12 ENSMUSG00000025453.18 ENSMUSG00000025453 ENSMUST00000144599 Nnt protein_coding Interval_120189 chr4 143894305 143895411 + 0 NA TTS (ENSMUSG00000078512.8) protein_coding-TTS (ENSMUSG00000078512.8) 3123 ENSMUSG00000078512.8 ENSMUSG00000078512 ENSMUST00000105767 Pramef6 protein_coding Interval_129520 chr5 120688477 120689199 + 0 NA intron (ENSMUSG00000029603.15, intron 1 of 7) protein_coding-intron (ENSMUSG00000029603.15, intron 3 of 9) -6759 ENSMUSG00000029603.15 ENSMUSG00000029603 ENSMUST00000124079 Dtx1 protein_coding Interval_14279 chr10 30305805 30306056 + 0 NA Intergenic Intergenic -66988 ENSMUSG00000111047.1 ENSMUSG00000111047 ENSMUST00000213206 Gm4780 transcribed_processed_pseudogene Interval_20397 chr10 117336452 117336829 + 0 NA Intergenic Intergenic 40288 ENSMUSG00000055531.12 ENSMUSG00000055531 ENSMUST00000175924 Cpsf6 protein_coding Interval_170118 chr9 104928830 104929191 + 0 NA intron (ENSMUSG00000032564.16, intron 7 of 12) protein_coding-intron (ENSMUSG00000032564.16, intron 7 of 15) 56331 ENSMUSG00000032564.16 ENSMUSG00000032564 ENSMUST00000213452 Cpne4 protein_coding Interval_117318 chr4 122982022 122982366 + 0 NA Intergenic Intergenic -17145 ENSMUSG00000028654.13 ENSMUSG00000028654 ENSMUST00000147259 Mycl protein_coding Interval_89995 chr2 27155776 27156472 + 0 NA intron (ENSMUSG00000085008.1, intron 5 of 6) antisense-intron (ENSMUSG00000085008.1, intron 5 of 6) 6579 ENSMUSG00000085008.1 ENSMUSG00000085008 ENSMUST00000150024 Dbhos antisense Interval_162277 chr8 126615845 126616214 + 0 NA Intergenic Intergenic -22043 ENSMUSG00000051495.7 ENSMUSG00000051495 ENSMUST00000054960 Irf2bp2 protein_coding Interval_59512 chr15 54826904 54827249 + 0 NA Intergenic Intergenic 35610 ENSMUSG00000022425.16 ENSMUSG00000022425 ENSMUST00000226339 Enpp2 protein_coding Interval_23697 chr11 24712435 24712621 + 0 NA intron (ENSMUSG00000087085.1, intron 3 of 3) lincRNA-intron (ENSMUSG00000087085.1, intron 3 of 3) 18194 ENSMUSG00000073103.2 ENSMUSG00000073103 ENSMUST00000101450 Gm10466 lincRNA Interval_36304 chr12 40974211 40975149 + 0 NA Intergenic Intergenic 45572 ENSMUSG00000114130.1 ENSMUSG00000114130 ENSMUST00000222200 Gm18954 processed_pseudogene Interval_148549 chr7 82350663 82351072 + 0 NA intron (ENSMUSG00000070469.12, intron 1 of 10) protein_coding-intron (ENSMUSG00000070469.12, intron 2 of 29) 8599 ENSMUSG00000109479.1 ENSMUSG00000109479 ENSMUST00000208587 Gm44919 TEC Interval_64002 chr16 5168296 5168565 + 0 NA intron (ENSMUSG00000091712.2, intron 5 of 15) protein_coding-intron (ENSMUSG00000091712.2, intron 5 of 15) 21321 ENSMUSG00000091712.2 ENSMUSG00000091712 ENSMUST00000230616 Sec14l5 protein_coding Interval_79745 chr18 34854629 34855636 + 0 NA Intergenic Intergenic -6075 ENSMUSG00000038418.7 ENSMUSG00000038418 ENSMUST00000165033 Egr1 protein_coding Interval_108570 chr3 129202823 129203048 + 0 NA intron (ENSMUSG00000028023.16, intron 1 of 4) protein_coding-intron (ENSMUSG00000028023.16, intron 1 of 3) -7071 ENSMUSG00000098515.1 ENSMUSG00000098515 ENSMUST00000184283 Gm27195 sense_intronic Interval_60873 chr15 77277506 77277767 + 0 NA intron (ENSMUSG00000033565.18, intron 1 of 13) protein_coding-intron (ENSMUSG00000033565.18, intron 1 of 12) -35085 ENSMUSG00000089242.1 ENSMUSG00000089242 ENSMUST00000158617 Gm24056 snRNA Interval_135601 chr6 41303004 41303254 + 0 NA intron (ENSMUSG00000054106.7, intron 1 of 4) protein_coding-intron (ENSMUSG00000054106.7, intron 1 of 4) 860 ENSMUSG00000054106.7 ENSMUSG00000054106 ENSMUST00000031913 Try4 protein_coding Interval_106709 chr3 99256853 99258052 + 0 NA intron (ENSMUSG00000105689.1, intron 2 of 2) protein_coding-intron (ENSMUSG00000027868.11, intron 1 of 7) 3833 ENSMUSG00000105689.1 ENSMUSG00000105689 ENSMUST00000196228 Gm43120 antisense Interval_16075 chr10 60566650 60567132 + 0 NA intron (ENSMUSG00000012819.15, intron 5 of 65) protein_coding-intron (ENSMUSG00000012819.15, intron 5 of 66) 166987 ENSMUSG00000090439.3 ENSMUSG00000090439 ENSMUST00000218360 Gm17455 protein_coding Interval_89998 chr2 27226517 27226880 + 0 NA intron (ENSMUSG00000009614.16, intron 12 of 20) protein_coding-intron (ENSMUSG00000009614.16, intron 5 of 12) -16761 ENSMUSG00000009614.16 ENSMUSG00000009614 ENSMUST00000129975 Sardh protein_coding Interval_113359 chr4 53825828 53826692 + 0 NA intron (ENSMUSG00000028420.13, intron 1 of 2) protein_coding-intron (ENSMUSG00000028420.13, intron 1 of 5) 203 ENSMUSG00000028420.13 ENSMUSG00000028420 ENSMUST00000144167 Tmem38b protein_coding Interval_44566 chr13 46171108 46171434 + 0 NA Intergenic Intergenic 19775 ENSMUSG00000062282.4 ENSMUSG00000062282 ENSMUST00000072437 Gm10113 lincRNA Interval_174785 chrX 166566123 166566493 + 0 NA intron (ENSMUSG00000000402.2, intron 2 of 11) protein_coding-intron (ENSMUSG00000000402.2, intron 2 of 11) 19412 ENSMUSG00000000402.2 ENSMUSG00000000402 ENSMUST00000000412 Egfl6 protein_coding Interval_174710 chrX 163934345 163934880 + 0 NA TTS (ENSMUSG00000031367.15) protein_coding-TTS (ENSMUSG00000031367.15) 23211 ENSMUSG00000031367.15 ENSMUSG00000031367 ENSMUST00000140845 Ap1s2 protein_coding Interval_157701 chr8 72376408 72376631 + 0 NA TTS (ENSMUSG00000006276.10) protein_coding-TTS (ENSMUSG00000006276.10) 44919 ENSMUSG00000006276.10 ENSMUSG00000006276 ENSMUST00000211977 Eps15l1 protein_coding Interval_135910 chr6 48619353 48620897 + 0 NA TTS (ENSMUSG00000007216.6) protein_coding-TTS (ENSMUSG00000007216.6) 2232 ENSMUSG00000107640.1 ENSMUSG00000107640 ENSMUST00000203998 Gm38804 antisense Interval_159404 chr8 94361876 94363746 + 0 NA intron (ENSMUSG00000031766.4, intron 24 of 24) protein_coding-intron (ENSMUSG00000031766.4, intron 24 of 24) -15061 ENSMUSG00000089712.2 ENSMUSG00000089712 ENSMUST00000159142 Gm15889 lincRNA Interval_76791 chr17 84081985 84082307 + 0 NA intron (ENSMUSG00000117571.1, intron 2 of 5) lincRNA-intron (ENSMUSG00000117571.1, intron 2 of 5) 3486 ENSMUSG00000117571.1 ENSMUSG00000117571 ENSMUST00000234076 4933433H22Rik lincRNA Interval_36998 chr12 56171945 56172137 + 0 NA Intergenic Intergenic -17373 ENSMUSG00000112650.1 ENSMUSG00000112650 ENSMUST00000220417 Gm5184 processed_pseudogene Interval_128154 chr5 111357068 111357282 + 0 NA intron (ENSMUSG00000050017.11, intron 7 of 10) protein_coding-intron (ENSMUSG00000050017.11, intron 7 of 11) 26368 ENSMUSG00000050017.11 ENSMUSG00000050017 ENSMUST00000198137 Pitpnb protein_coding Interval_21781 chr11 4307742 4309318 + 0 NA Intergenic Intergenic 15725 ENSMUSG00000065627.1 ENSMUSG00000065627 ENSMUST00000083693 Gm24803 snRNA Interval_18320 chr10 84885698 84886833 + 0 NA intron (ENSMUSG00000020037.15, intron 12 of 14) protein_coding-intron (ENSMUSG00000020037.15, intron 15 of 17) -51128 ENSMUSG00000035620.15 ENSMUSG00000035620 ENSMUST00000214820 Ric8b protein_coding Interval_122388 chr5 21900626 21902008 + 0 NA intron (ENSMUSG00000042453.14, intron 60 of 64) protein_coding-intron (ENSMUSG00000042453.14, intron 60 of 63) -2271 ENSMUSG00000042453.14 ENSMUSG00000042453 ENSMUST00000161782 Reln protein_coding Interval_44896 chr13 49453428 49453647 + 0 NA intron (ENSMUSG00000021385.10, intron 12 of 13) protein_coding-intron (ENSMUSG00000021385.10, intron 11 of 12) 32259 ENSMUSG00000021385.10 ENSMUSG00000021385 ENSMUST00000021817 Ippk protein_coding Interval_37235 chr12 61949932 61950619 + 0 NA Intergenic Intergenic 29701 ENSMUSG00000088468.1 ENSMUSG00000088468 ENSMUST00000157843 Gm24750 snRNA Interval_174686 chrX 162915232 162916143 + 0 NA intron (ENSMUSG00000031360.14, intron 3 of 3) protein_coding-intron (ENSMUSG00000031360.14, intron 4 of 18) 13902 ENSMUSG00000031360.14 ENSMUSG00000031360 ENSMUST00000112300 Ctps2 protein_coding Interval_86983 chr19 45338146 45338382 + 0 NA promoter-TSS (ENSMUSG00000100417.2) lincRNA-promoter-TSS (ENSMUSG00000100417.2) 20371 ENSMUSG00000102057.1 ENSMUSG00000102057 ENSMUST00000191181 Gm29594 lincRNA Interval_157023 chr8 64578421 64578958 + 0 NA Intergenic Intergenic 43308 ENSMUSG00000037852.8 ENSMUSG00000037852 ENSMUST00000211312 Cpe protein_coding Interval_37816 chr12 72229706 72229940 + 0 NA intron (ENSMUSG00000021087.18, intron 3 of 8) protein_coding-intron (ENSMUSG00000021087.18, intron 1 of 6) 6725 ENSMUSG00000021087.18 ENSMUSG00000021087 ENSMUST00000221756 Rtn1 protein_coding Interval_18338 chr10 85027549 85028057 + 0 NA Intergenic Intergenic 74692 ENSMUSG00000050035.7 ENSMUSG00000050035 ENSMUST00000216889 Fhl4 protein_coding Interval_86373 chr19 39169806 39170467 + 0 NA intron (ENSMUSG00000067229.3, intron 4 of 7) protein_coding-intron (ENSMUSG00000067229.3, intron 5 of 8) 56226 ENSMUSG00000067229.3 ENSMUSG00000067229 ENSMUST00000146494 Cyp2c66 protein_coding Interval_39474 chr12 88182162 88182495 + 0 NA promoter-TSS (ENSMUSG00000066027.7) protein_coding-promoter-TSS (ENSMUSG00000066027.7) -532 ENSMUSG00000066027.7 ENSMUSG00000066027 ENSMUST00000223172 Gm10436 protein_coding Interval_118121 chr4 129067678 129068522 + 0 NA intron (ENSMUSG00000028793.15, intron 1 of 8) protein_coding-intron (ENSMUSG00000028793.15, intron 1 of 9) 9829 ENSMUSG00000028793.15 ENSMUSG00000028793 ENSMUST00000147238 Rnf19b protein_coding Interval_74919 chr17 57299054 57299325 + 0 NA exon (ENSMUSG00000034116.17, exon 8 of 27) protein_coding-exon (ENSMUSG00000034116.17, exon 8 of 27) -3875 ENSMUSG00000034116.17 ENSMUSG00000034116 ENSMUST00000008847 Vav1 protein_coding Interval_95292 chr2 105764929 105765867 + 0 NA intron (ENSMUSG00000027167.11, intron 7 of 7) protein_coding-intron (ENSMUSG00000027167.11, intron 7 of 7) 48924 ENSMUSG00000027167.11 ENSMUSG00000027167 ENSMUST00000148441 Elp4 protein_coding Interval_55858 chr14 101597085 101597719 + 0 NA intron (ENSMUSG00000033083.16, intron 1 of 20) protein_coding-intron (ENSMUSG00000033083.16, intron 1 of 13) 11084 ENSMUSG00000033083.16 ENSMUSG00000033083 ENSMUST00000160473 Tbc1d4 protein_coding Interval_18358 chr10 85183572 85186087 + 0 NA exon (ENSMUSG00000020038.10, exon 1 of 13) protein_coding-exon (ENSMUSG00000020038.10, exon 1 of 13) -33473 ENSMUSG00000020038.10 ENSMUSG00000020038 ENSMUST00000214675 Cry1 protein_coding Interval_153281 chr7 143254069 143254350 + 0 NA exon (ENSMUSG00000101609.2, exon 1 of 1) antisense-exon (ENSMUSG00000101609.2, exon 1 of 1) 2842 ENSMUSG00000098857.1 ENSMUSG00000098857 ENSMUST00000183938 Gm27395 misc_RNA Interval_48059 chr13 95629032 95630387 + 0 NA intron (ENSMUSG00000021676.10, intron 34 of 35) protein_coding-intron (ENSMUSG00000021676.10, intron 34 of 35) -11222 ENSMUSG00000048376.6 ENSMUSG00000048376 ENSMUST00000059193 F2r protein_coding Interval_161918 chr8 123753193 123755210 + 0 NA promoter-TSS (ENSMUSG00000110684.1) lincRNA-promoter-TSS (ENSMUSG00000110684.1) -169 ENSMUSG00000110684.1 ENSMUSG00000110684 ENSMUST00000212425 Gm45866 lincRNA Interval_64096 chr16 8177145 8177632 + 0 NA Intergenic Intergenic -26587 ENSMUSG00000089506.1 ENSMUSG00000089506 ENSMUST00000158881 Gm23476 misc_RNA Interval_69298 chr16 92007646 92008872 + 0 NA Intergenic Intergenic 2152 ENSMUSG00000116834.1 ENSMUSG00000116834 ENSMUST00000232327 Gm18020 processed_pseudogene Interval_162201 chr8 125916742 125917465 + 0 NA intron (ENSMUSG00000031853.5, intron 1 of 9) protein_coding-intron (ENSMUSG00000031853.5, intron 1 of 9) 6653 ENSMUSG00000031853.5 ENSMUSG00000031853 ENSMUST00000034316 Map3k21 protein_coding Interval_34353 chr12 3560529 3561123 + 0 NA Intergenic Intergenic -11644 ENSMUSG00000071454.13 ENSMUSG00000071454 ENSMUST00000174293 Dtnb protein_coding Interval_72171 chr17 28404224 28404528 + 0 NA intron (ENSMUSG00000024222.17, intron 5 of 6) protein_coding-intron (ENSMUSG00000024222.17, intron 9 of 10) 22054 ENSMUSG00000117313.1 ENSMUSG00000117313 ENSMUST00000233201 Gm49838 sense_intronic Interval_94038 chr2 81746247 81747497 + 0 NA Intergenic Intergenic -203530 ENSMUSG00000088194.1 ENSMUSG00000088194 ENSMUST00000157569 Gm23900 rRNA Interval_154172 chr8 13204199 13204858 + 0 NA intron (ENSMUSG00000099338.1, intron 2 of 2) bidirectional_promoter_lncRNA-intron (ENSMUSG00000099338.1, intron 1 of 1) 3808 ENSMUSG00000099338.1 ENSMUSG00000099338 ENSMUST00000187595 2810030D12Rik bidirectional_promoter_lncRNA Interval_138073 chr6 84980251 84980432 + 0 NA intron (ENSMUSG00000033769.16, intron 6 of 6) protein_coding-intron (ENSMUSG00000033769.16, intron 6 of 16) 59218 ENSMUSG00000108012.1 ENSMUSG00000108012 ENSMUST00000204154 Gm44012 antisense Interval_9114 chr1 153704290 153705437 + 0 NA Intergenic Intergenic -9791 ENSMUSG00000102404.1 ENSMUSG00000102404 ENSMUST00000193511 5530400K19Rik TEC Interval_75487 chr17 67252118 67252654 + 0 NA intron (ENSMUSG00000033278.10, intron 1 of 19) protein_coding-intron (ENSMUSG00000033278.10, intron 1 of 32) -226151 ENSMUSG00000093508.1 ENSMUSG00000093508 ENSMUST00000176783 Mir5709 miRNA Interval_151675 chr7 125954917 125955403 + 0 NA intron (ENSMUSG00000046182.8, intron 3 of 6) protein_coding-intron (ENSMUSG00000046182.8, intron 3 of 6) 109287 ENSMUSG00000108376.1 ENSMUSG00000108376 ENSMUST00000206586 Gm44874 TEC Interval_45271 chr13 53777049 53777812 + 0 NA intron (ENSMUSG00000114143.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000114143.1, intron 1 of 1) 803 ENSMUSG00000114143.1 ENSMUSG00000114143 ENSMUST00000221931 Gm48548 lincRNA Interval_132682 chr5 147131570 147131869 + 0 NA Intergenic Intergenic -30666 ENSMUSG00000083988.1 ENSMUSG00000083988 ENSMUST00000120308 Rps10-ps4 processed_pseudogene Interval_29505 chr11 84513075 84514116 + 0 NA promoter-TSS (ENSMUSG00000018697.14) protein_coding-promoter-TSS (ENSMUSG00000018697.14) -73 ENSMUSG00000018697.14 ENSMUSG00000018697 ENSMUST00000148434 Aatf protein_coding Interval_86959 chr19 45220697 45221692 + 0 NA Intergenic Intergenic 14618 ENSMUSG00000025216.9 ENSMUSG00000025216 ENSMUST00000099401 Lbx1 protein_coding Interval_154628 chr8 22143467 22143827 + 0 NA intron (ENSMUSG00000031478.16, intron 9 of 14) protein_coding-intron (ENSMUSG00000031478.16, intron 10 of 15) 18847 ENSMUSG00000031478.16 ENSMUSG00000031478 ENSMUST00000151371 Nek3 protein_coding Interval_78750 chr18 20228141 20228979 + 0 NA Intergenic Intergenic -18780 ENSMUSG00000034774.6 ENSMUSG00000034774 ENSMUST00000054128 Dsg1c protein_coding Interval_106163 chr3 94128508 94128968 + 0 NA Intergenic Intergenic -5724 ENSMUSG00000102949.1 ENSMUSG00000102949 ENSMUST00000195254 Gm37882 unprocessed_pseudogene Interval_5755 chr1 91507737 91508003 + 0 NA intron (ENSMUSG00000034292.13, intron 7 of 14) protein_coding-intron (ENSMUSG00000034292.13, intron 7 of 14) 13223 ENSMUSG00000034292.13 ENSMUSG00000034292 ENSMUST00000187588 Traf3ip1 protein_coding Interval_129459 chr5 120325518 120326364 + 0 NA Intergenic Intergenic 20027 ENSMUSG00000107141.1 ENSMUSG00000107141 ENSMUST00000200789 Gm42654 lincRNA Interval_74267 chr17 47797150 47797604 + 0 NA Intergenic Intergenic 9467 ENSMUSG00000023990.18 ENSMUSG00000023990 ENSMUST00000140715 Tfeb protein_coding Interval_59629 chr15 56760604 56760845 + 0 NA intron (ENSMUSG00000086541.8, intron 2 of 2) processed_transcript-intron (ENSMUSG00000086541.8, intron 2 of 2) 22704 ENSMUSG00000115493.1 ENSMUSG00000115493 ENSMUST00000228866 Gm5673 processed_pseudogene Interval_106 GL456233.1 159565 159904 + 0 NA NA NA NA NA Interval_173482 chrX 95038063 95038387 + 0 NA Intergenic Intergenic -11543 ENSMUSG00000071722.4 ENSMUSG00000071722 ENSMUST00000096367 Spin4 protein_coding Interval_120077 chr4 141674802 141675745 + 0 NA Intergenic Intergenic 10326 ENSMUSG00000040715.12 ENSMUSG00000040715 ENSMUST00000105782 Rsc1a1 protein_coding Interval_109216 chr3 137961629 137962165 + 0 NA intron (ENSMUSG00000028159.14, intron 1 of 7) protein_coding-intron (ENSMUSG00000028159.14, intron 2 of 8) -7184 ENSMUSG00000028159.14 ENSMUSG00000028159 ENSMUST00000199541 Dapp1 protein_coding Interval_78638 chr18 16088045 16089091 + 0 NA Intergenic Intergenic 54822 ENSMUSG00000088818.1 ENSMUSG00000088818 ENSMUST00000158193 Gm22389 misc_RNA Interval_58881 chr15 39674294 39676196 + 0 NA intron (ENSMUSG00000037386.16, intron 20 of 23) protein_coding-intron (ENSMUSG00000037386.16, intron 23 of 26) -70689 ENSMUSG00000022303.9 ENSMUSG00000022303 ENSMUST00000227792 Dcstamp protein_coding Interval_100049 chr2 166746192 166747276 + 0 NA Intergenic Intergenic -22011 ENSMUSG00000088063.1 ENSMUSG00000088063 ENSMUST00000157438 Gm24477 snRNA Interval_14494 chr10 34328133 34328723 + 0 NA intron (ENSMUSG00000039480.14, intron 5 of 10) protein_coding-intron (ENSMUSG00000039480.14, intron 6 of 11) 29172 ENSMUSG00000039485.8 ENSMUSG00000039485 ENSMUST00000213791 Tspyl4 protein_coding Interval_155186 chr8 27270423 27271499 + 0 NA intron (ENSMUSG00000031490.6, intron 3 of 4) protein_coding-intron (ENSMUSG00000031490.6, intron 1 of 2) 6547 ENSMUSG00000031490.6 ENSMUSG00000031490 ENSMUST00000210959 Eif4ebp1 protein_coding Interval_13299 chr10 14322921 14323881 + 0 NA intron (ENSMUSG00000112679.1, intron 2 of 2) lincRNA-intron (ENSMUSG00000112679.1, intron 2 of 2) -4010 ENSMUSG00000112225.1 ENSMUSG00000112225 ENSMUST00000218527 Gm48854 lincRNA Interval_82049 chr18 67363894 67364901 + 0 NA intron (ENSMUSG00000024526.9, intron 3 of 4) protein_coding-intron (ENSMUSG00000024526.9, intron 3 of 4) -20294 ENSMUSG00000046415.11 ENSMUSG00000046415 ENSMUST00000138236 B430212C06Rik processed_transcript Interval_91542 chr2 42097168 42097451 + 0 NA intron (ENSMUSG00000049252.17, intron 2 of 2) protein_coding-intron (ENSMUSG00000049252.17, intron 2 of 90) -27312 ENSMUSG00000081085.1 ENSMUSG00000081085 ENSMUST00000119020 Gm13463 processed_pseudogene Interval_7063 chr1 124986633 124986845 + 0 NA Intergenic Intergenic -140700 ENSMUSG00000036815.17 ENSMUSG00000036815 ENSMUST00000187286 Dpp10 protein_coding Interval_90046 chr2 27504742 27506313 + 0 NA intron (ENSMUSG00000026918.16, intron 1 of 11) protein_coding-intron (ENSMUSG00000026918.16, intron 1 of 11) -9630 ENSMUSG00000026917.15 ENSMUSG00000026917 ENSMUST00000125088 Wdr5 protein_coding Interval_87944 chr19 57291394 57291746 + 0 NA intron (ENSMUSG00000025085.16, intron 1 of 20) protein_coding-intron (ENSMUSG00000025085.16, intron 1 of 6) 17610 ENSMUSG00000117684.1 ENSMUSG00000117684 ENSMUST00000237596 4930449E18Rik antisense Interval_71794 chr17 26130884 26132398 + 0 NA Intergenic Intergenic 8121 ENSMUSG00000024181.9 ENSMUSG00000024181 ENSMUST00000123132 Mrpl28 protein_coding Interval_167382 chr9 68015111 68015627 + 0 NA Intergenic Intergenic 10345 ENSMUSG00000111841.1 ENSMUSG00000111841 ENSMUST00000216827 Gm20745 lincRNA Interval_100083 chr2 166969969 166970178 + 0 NA intron (ENSMUSG00000039536.16, intron 1 of 11) protein_coding-intron (ENSMUSG00000039536.16, intron 1 of 11) -5357 ENSMUSG00000039536.16 ENSMUSG00000039536 ENSMUST00000130104 Stau1 protein_coding Interval_172013 chr9 123504336 123504812 + 0 NA intron (ENSMUSG00000025239.3, intron 2 of 3) protein_coding-intron (ENSMUSG00000025239.3, intron 2 of 7) 23964 ENSMUSG00000025239.3 ENSMUSG00000025239 ENSMUST00000214309 Limd1 protein_coding Interval_101182 chr2 179069714 179071062 + 0 NA Intergenic Intergenic -49255 ENSMUSG00000082215.3 ENSMUSG00000082215 ENSMUST00000118225 Gm14314 processed_pseudogene Interval_66110 chr16 31663113 31664610 + 0 NA promoter-TSS (ENSMUSG00000022770.17) protein_coding-promoter-TSS (ENSMUSG00000022770.17) -15380 ENSMUSG00000116781.1 ENSMUSG00000116781 ENSMUST00000232316 Gm49712 TEC Interval_49404 chr13 111760753 111761472 + 0 NA intron (ENSMUSG00000021754.17, intron 9 of 19) protein_coding-intron (ENSMUSG00000021754.17, intron 9 of 19) -9739 ENSMUSG00000021754.17 ENSMUSG00000021754 ENSMUST00000145055 Map3k1 protein_coding Interval_62926 chr15 97952224 97953461 + 0 NA Intergenic Intergenic -11414 ENSMUSG00000052369.8 ENSMUSG00000052369 ENSMUST00000231079 Tmem106c protein_coding Interval_98359 chr2 151756860 151758199 + 0 NA Intergenic Intergenic -7551 ENSMUSG00000086800.1 ENSMUSG00000086800 ENSMUST00000134422 4930556L07Rik lincRNA Interval_5286 chr1 87245835 87246780 + 0 NA Intergenic Intergenic -4841 ENSMUSG00000088318.1 ENSMUSG00000088318 ENSMUST00000157693 Gm26187 snRNA Interval_115456 chr4 99100823 99101036 + 0 NA intron (ENSMUSG00000028556.15, intron 1 of 47) protein_coding-intron (ENSMUSG00000028556.15, intron 1 of 48) 2849 ENSMUSG00000081733.1 ENSMUSG00000081733 ENSMUST00000119478 Gm12852 processed_pseudogene Interval_159769 chr8 102147522 102148778 + 0 NA Intergenic Intergenic -375744 ENSMUSG00000088596.1 ENSMUSG00000088596 ENSMUST00000157971 Gm24602 snRNA Interval_97508 chr2 138226411 138226768 + 0 NA Intergenic Intergenic -30073 ENSMUSG00000062098.11 ENSMUSG00000062098 ENSMUST00000075410 Btbd3 protein_coding Interval_23299 chr11 21256455 21256986 + 0 NA intron (ENSMUSG00000020128.15, intron 1 of 22) protein_coding-intron (ENSMUSG00000020128.15, intron 1 of 22) -7160 ENSMUSG00000089155.1 ENSMUSG00000089155 ENSMUST00000158530 Gm23582 snoRNA Interval_63164 chr15 99474021 99475078 + 0 NA exon (ENSMUSG00000037525.5, exon 1 of 2) protein_coding-exon (ENSMUSG00000037525.5, exon 1 of 2) 159 ENSMUSG00000037525.5 ENSMUSG00000037525 ENSMUST00000229827 Bcdin3d protein_coding Interval_112838 chr4 45435789 45436952 + 0 NA intron (ENSMUSG00000044813.15, intron 4 of 4) protein_coding-intron (ENSMUSG00000044813.15, intron 5 of 5) -27724 ENSMUSG00000045973.18 ENSMUSG00000045973 ENSMUST00000134714 Slc25a51 protein_coding Interval_72114 chr17 28122876 28123892 + 0 NA Intergenic Intergenic 16722 ENSMUSG00000117189.1 ENSMUSG00000117189 ENSMUST00000232878 Gm49897 TEC Interval_135325 chr6 38339343 38339629 + 0 NA intron (ENSMUSG00000029826.14, intron 2 of 11) protein_coding-intron (ENSMUSG00000029826.14, intron 2 of 8) 14787 ENSMUSG00000029826.14 ENSMUSG00000029826 ENSMUST00000114898 Zc3hav1 protein_coding Interval_161458 chr8 120562065 120562299 + 0 NA promoter-TSS (ENSMUSG00000031822.20) protein_coding-promoter-TSS (ENSMUSG00000031822.20) -441 ENSMUSG00000031822.20 ENSMUSG00000031822 ENSMUST00000141113 Gse1 protein_coding Interval_127965 chr5 109906113 109906302 + 0 NA Intergenic Intergenic 19976 ENSMUSG00000097140.1 ENSMUSG00000097140 ENSMUST00000181101 Gm26779 lincRNA Interval_122325 chr5 21326172 21326762 + 0 NA intron (ENSMUSG00000064280.14, intron 2 of 4) protein_coding-intron (ENSMUSG00000064280.14, intron 4 of 7) 4652 ENSMUSG00000064280.14 ENSMUSG00000064280 ENSMUST00000132473 Ccdc146 protein_coding Interval_75977 chr17 74046729 74049012 + 0 NA promoter-TSS (ENSMUSG00000038541.8) protein_coding-promoter-TSS (ENSMUSG00000038541.8) 46 ENSMUSG00000038541.8 ENSMUSG00000038541 ENSMUST00000043458 Srd5a2 protein_coding Interval_59350 chr15 51819932 51820267 + 0 NA intron (ENSMUSG00000022312.11, intron 2 of 2) protein_coding-intron (ENSMUSG00000022312.11, intron 2 of 7) 16158 ENSMUSG00000022312.11 ENSMUSG00000022312 ENSMUST00000228583 Eif3h protein_coding Interval_76830 chr17 84375275 84375924 + 0 NA intron (ENSMUSG00000024251.10, intron 11 of 14) protein_coding-intron (ENSMUSG00000024251.10, intron 26 of 37) -15830 ENSMUSG00000096415.1 ENSMUSG00000096415 ENSMUST00000179017 Gm24722 snRNA Interval_91856 chr2 50366230 50366661 + 0 NA intron (ENSMUSG00000085862.2, intron 1 of 2) lincRNA-intron (ENSMUSG00000085862.2, intron 1 of 2) -13955 ENSMUSG00000115545.1 ENSMUSG00000115545 ENSMUST00000227437 Gm48908 lincRNA Interval_88832 chr2 11523621 11524126 + 0 NA intron (ENSMUSG00000102329.1, intron 1 of 2) antisense-intron (ENSMUSG00000102329.1, intron 1 of 2) 2167 ENSMUSG00000102329.1 ENSMUSG00000102329 ENSMUST00000192087 Gm10851 antisense Interval_42155 chr13 9233501 9234610 + 0 NA Intergenic Intergenic 10518 ENSMUSG00000113936.1 ENSMUSG00000113936 ENSMUST00000222096 Gm8784 processed_pseudogene Interval_83246 chr18 82975111 82976171 + 0 NA intron (ENSMUSG00000058881.13, intron 2 of 5) protein_coding-intron (ENSMUSG00000058881.13, intron 2 of 5) -36262 ENSMUSG00000118094.1 ENSMUSG00000118094 ENSMUST00000236941 AC142100.1 processed_transcript Interval_148035 chr7 78595677 78596506 + 0 NA intron (ENSMUSG00000059146.12, intron 6 of 7) protein_coding-intron (ENSMUSG00000059146.12, intron 6 of 7) 17261 ENSMUSG00000052629.5 ENSMUSG00000052629 ENSMUST00000186234 Gm9885 antisense Interval_19210 chr10 95524054 95525388 + 0 NA intron (ENSMUSG00000074781.5, intron 1 of 2) protein_coding-intron (ENSMUSG00000074781.5, intron 1 of 3) 9067 ENSMUSG00000074781.5 ENSMUSG00000074781 ENSMUST00000217757 Ube2n protein_coding Interval_133184 chr5 150402616 150403536 + 0 NA TTS (ENSMUSG00000056602.12) protein_coding-TTS (ENSMUSG00000056602.12) 39228 ENSMUSG00000118543.1 ENSMUSG00000118543 ENSMUST00000239092 AC154885.1 unprocessed_pseudogene Interval_16443 chr10 62895516 62900445 + 0 NA intron (ENSMUSG00000047146.17, intron 2 of 2) protein_coding-intron (ENSMUSG00000047146.17, intron 1 of 12) -4466 ENSMUSG00000084569.1 ENSMUSG00000084569 ENSMUST00000122620 Gm26479 snRNA Interval_12784 chr10 5329260 5329926 + 0 NA intron (ENSMUSG00000096054.3, intron 36 of 145) protein_coding-intron (ENSMUSG00000096054.3, intron 36 of 145) -27580 ENSMUSG00000094906.1 ENSMUSG00000094906 ENSMUST00000104408 Gm23573 snRNA Interval_42460 chr13 13777916 13778308 + 0 NA exon (ENSMUSG00000019726.12, exon 53 of 53) protein_coding-exon (ENSMUSG00000019726.12, exon 53 of 53) -11232 ENSMUSG00000087898.1 ENSMUSG00000087898 ENSMUST00000157273 Gm25271 misc_RNA Interval_31767 chr11 102728521 102729173 + 0 NA Intergenic Intergenic 3216 ENSMUSG00000084375.1 ENSMUSG00000084375 ENSMUST00000120601 Gm11637 processed_pseudogene Interval_131275 chr5 136122587 136123166 + 0 NA TTS (ENSMUSG00000039771.13) protein_coding-TTS (ENSMUSG00000039771.13) -1206 ENSMUSG00000105349.1 ENSMUSG00000105349 ENSMUST00000199799 Gm43604 antisense Interval_66859 chr16 38164845 38165548 + 0 NA intron (ENSMUSG00000022812.14, intron 2 of 5) protein_coding-intron (ENSMUSG00000022812.14, intron 2 of 10) 7188 ENSMUSG00000105863.1 ENSMUSG00000105863 ENSMUST00000198387 Gm25617 snoRNA Interval_109949 chr3 152116239 152117188 + 0 NA intron (ENSMUSG00000039131.15, intron 3 of 5) protein_coding-intron (ENSMUSG00000039131.15, intron 3 of 5) 10274 ENSMUSG00000105698.1 ENSMUSG00000105698 ENSMUST00000198961 Gm31881 antisense Interval_58705 chr15 37231661 37234618 + 0 NA promoter-TSS (ENSMUSG00000089804.2) antisense-promoter-TSS (ENSMUSG00000089804.2) 20 ENSMUSG00000089804.2 ENSMUSG00000089804 ENSMUST00000159411 Gm16136 antisense Interval_77371 chr17 88297198 88297447 + 0 NA intron (ENSMUSG00000117497.1, intron 3 of 3) lincRNA-intron (ENSMUSG00000117497.1, intron 4 of 4) 8056 ENSMUSG00000117497.1 ENSMUSG00000117497 ENSMUST00000234925 1700116H05Rik lincRNA Interval_152877 chr7 139413402 139413619 + 0 NA intron (ENSMUSG00000025477.14, intron 1 of 15) protein_coding-intron (ENSMUSG00000025477.14, intron 1 of 15) -103149 ENSMUSG00000025477.14 ENSMUSG00000025477 ENSMUST00000152475 Inpp5a protein_coding Interval_170599 chr9 109140360 109140846 + 0 NA intron (ENSMUSG00000047237.13, intron 9 of 9) protein_coding-intron (ENSMUSG00000047237.13, intron 9 of 9) 21417 ENSMUSG00000047237.13 ENSMUSG00000047237 ENSMUST00000199540 Fbxw21 protein_coding Interval_73799 chr17 43800628 43802429 + 0 NA promoter-TSS (ENSMUSG00000039601.16) protein_coding-promoter-TSS (ENSMUSG00000039601.16) 103165 ENSMUSG00000084474.1 ENSMUSG00000084474 ENSMUST00000122525 Gm25783 snRNA Interval_26517 chr11 58322810 58324245 + 0 NA promoter-TSS (ENSMUSG00000049755.14) protein_coding-promoter-TSS (ENSMUSG00000049755.14) 539 ENSMUSG00000087347.1 ENSMUSG00000087347 ENSMUST00000145068 1700047K16Rik processed_transcript Interval_64485 chr16 12060524 12061623 + 0 NA intron (ENSMUSG00000022494.15, intron 2 of 4) protein_coding-intron (ENSMUSG00000022494.15, intron 2 of 3) 76615 ENSMUSG00000022494.15 ENSMUSG00000022494 ENSMUST00000229804 Shisa9 protein_coding Interval_36499 chr12 46609772 46610118 + 0 NA Intergenic Intergenic 55764 ENSMUSG00000112174.1 ENSMUSG00000112174 ENSMUST00000217951 Gm48535 lincRNA Interval_68480 chr16 77917960 77918596 + 0 NA Intergenic Intergenic 71674 ENSMUSG00000091193.2 ENSMUSG00000091193 ENSMUST00000169531 Gm17333 lincRNA Interval_143776 chr7 16241791 16242188 + 0 NA intron (ENSMUSG00000074361.11, intron 1 of 1) protein_coding-intron (ENSMUSG00000074361.11, intron 1 of 1) 342 ENSMUSG00000074361.11 ENSMUSG00000074361 ENSMUST00000171425 C5ar2 protein_coding Interval_140219 chr6 115639390 115639634 + 0 NA promoter-TSS (ENSMUSG00000081805.1) processed_pseudogene-promoter-TSS (ENSMUSG00000081805.1) -453 ENSMUSG00000081805.1 ENSMUSG00000081805 ENSMUST00000119165 Gm14335 processed_pseudogene Interval_137208 chr6 70077040 70077312 + 0 NA Intergenic Intergenic -2573 ENSMUSG00000076576.2 ENSMUSG00000076576 ENSMUST00000103377 Igkv6-32 IG_V_gene Interval_2705 chr1 43591007 43591374 + 0 NA Intergenic Intergenic 30917 ENSMUSG00000103945.1 ENSMUSG00000103945 ENSMUST00000193169 Gm38228 TEC Interval_122008 chr5 13798719 13798988 + 0 NA intron (ENSMUSG00000104638.1, intron 2 of 2) lincRNA-intron (ENSMUSG00000104638.1, intron 2 of 2) 7234 ENSMUSG00000067855.7 ENSMUSG00000067855 ENSMUST00000124677 Speer3 protein_coding Interval_148466 chr7 81503022 81503225 + 0 NA Intergenic Intergenic -4852 ENSMUSG00000061877.13 ENSMUSG00000061877 ENSMUST00000207871 BC048679 protein_coding Interval_90749 chr2 32277777 32278376 + 0 NA TTS (ENSMUSG00000044627.11) protein_coding-TTS (ENSMUSG00000044627.11) 6231 ENSMUSG00000066068.5 ENSMUSG00000066068 ENSMUST00000118269 Gm13611 processed_pseudogene Interval_63963 chr16 4867232 4867432 + 0 NA TTS (ENSMUSG00000022518.16) protein_coding-TTS (ENSMUSG00000022518.16) 3009 ENSMUSG00000022518.16 ENSMUSG00000022518 ENSMUST00000180939 4930562C15Rik protein_coding Interval_11461 chr1 182012170 182012443 + 0 NA intron (ENSMUSG00000022995.16, intron 1 of 13) protein_coding-intron (ENSMUSG00000022995.16, intron 1 of 14) -4620 ENSMUSG00000102760.1 ENSMUSG00000102760 ENSMUST00000191734 Gm37258 TEC Interval_45110 chr13 52283775 52285246 + 0 NA Intergenic Intergenic 104099 ENSMUSG00000113399.1 ENSMUSG00000113399 ENSMUST00000222876 Gm48199 lincRNA Interval_103930 chr3 55080235 55081082 + 0 NA intron (ENSMUSG00000106589.1, intron 6 of 7) antisense-intron (ENSMUSG00000106589.1, intron 6 of 7) -23002 ENSMUSG00000105977.1 ENSMUSG00000105977 ENSMUST00000196588 Gm43555 processed_pseudogene Interval_50270 chr14 11560586 11561607 + 0 NA intron (ENSMUSG00000021745.14, intron 1 of 3) protein_coding-intron (ENSMUSG00000021745.14, intron 1 of 29) -40326 ENSMUSG00000114849.1 ENSMUSG00000114849 ENSMUST00000224543 Gm48595 lincRNA Interval_115690 chr4 102234507 102235992 + 0 NA intron (ENSMUSG00000028525.16, intron 3 of 6) protein_coding-intron (ENSMUSG00000028525.16, intron 3 of 16) -19981 ENSMUSG00000028525.16 ENSMUSG00000028525 ENSMUST00000106901 Pde4b protein_coding Interval_4037 chr1 66758029 66758425 + 0 NA intron (ENSMUSG00000026004.15, intron 5 of 13) protein_coding-intron (ENSMUSG00000026004.15, intron 6 of 13) 10504 ENSMUSG00000102559.1 ENSMUSG00000102559 ENSMUST00000195411 Gm37570 TEC Interval_58198 chr15 30661532 30665174 + 0 NA intron (ENSMUSG00000022240.10, intron 1 of 1) protein_coding-intron (ENSMUSG00000022240.10, intron 7 of 22) -36732 ENSMUSG00000115337.1 ENSMUSG00000115337 ENSMUST00000228499 4930570B17Rik antisense Interval_54422 chr14 69236062 69236559 + 0 NA Intergenic Intergenic -22836 ENSMUSG00000098248.1 ENSMUSG00000098248 ENSMUST00000183398 Gm27222 antisense Interval_3810 chr1 63213679 63214898 + 0 NA promoter-TSS (ENSMUSG00000046856.13) protein_coding-promoter-TSS (ENSMUSG00000046856.13) -65 ENSMUSG00000046856.13 ENSMUSG00000046856 ENSMUST00000187533 Gpr1 protein_coding Interval_51396 chr14 27203400 27203626 + 0 NA intron (ENSMUSG00000021895.10, intron 3 of 13) protein_coding-intron (ENSMUSG00000021895.10, intron 3 of 13) -6884 ENSMUSG00000114349.1 ENSMUSG00000114349 ENSMUST00000225776 Gm7591 processed_pseudogene Interval_133026 chr5 149369746 149370019 + 0 NA intron (ENSMUSG00000107314.1, intron 1 of 8) lincRNA-intron (ENSMUSG00000107271.3, intron 1 of 3) 834 ENSMUSG00000107271.3 ENSMUSG00000107271 ENSMUST00000202340 BC028471 lincRNA Interval_26352 chr11 57160678 57160884 + 0 NA intron (ENSMUSG00000020524.16, intron 2 of 15) protein_coding-intron (ENSMUSG00000020524.16, intron 2 of 15) -15737 ENSMUSG00000020524.16 ENSMUSG00000020524 ENSMUST00000173531 Gria1 protein_coding Interval_71147 chr17 20096797 20097809 + 0 NA Intergenic Intergenic 16923 ENSMUSG00000071276.1 ENSMUSG00000071276 ENSMUST00000095637 Fpr-rs7 protein_coding Interval_6014 chr1 93942317 93942603 + 0 NA exon (ENSMUSG00000093805.7, exon 4 of 4) protein_coding-exon (ENSMUSG00000093805.7, exon 4 of 4) 24149 ENSMUSG00000093805.7 ENSMUSG00000093805 ENSMUST00000177958 Gal3st2b protein_coding Interval_160415 chr8 109278866 109279602 + 0 NA Intergenic Intergenic 61630 ENSMUSG00000110528.1 ENSMUSG00000110528 ENSMUST00000211890 Gm1943 processed_pseudogene Interval_171646 chr9 119927176 119927762 + 0 NA TTS (ENSMUSG00000032512.7) protein_coding-TTS (ENSMUSG00000032512.7) 5383 ENSMUSG00000032513.8 ENSMUSG00000032513 ENSMUST00000213409 Gorasp1 protein_coding Interval_23562 chr11 23371286 23371970 + 0 NA intron (ENSMUSG00000056342.16, intron 18 of 79) protein_coding-intron (ENSMUSG00000056342.16, intron 18 of 79) 64733 ENSMUSG00000056342.16 ENSMUSG00000056342 ENSMUST00000125701 Usp34 protein_coding Interval_108178 chr3 122190349 122191274 + 0 NA intron (ENSMUSG00000104887.1, intron 5 of 5) unprocessed_pseudogene-intron (ENSMUSG00000104887.1, intron 5 of 5) -5807 ENSMUSG00000104799.1 ENSMUSG00000104799 ENSMUST00000198695 Gm9361 processed_pseudogene Interval_77572 chr17 92049830 92050331 + 0 NA Intergenic Intergenic -130985 ENSMUSG00000117584.1 ENSMUSG00000117584 ENSMUST00000234894 Gm49994 processed_pseudogene Interval_147189 chr7 64267769 64268995 + 0 NA TTS (ENSMUSG00000030523.18) protein_coding-TTS (ENSMUSG00000030523.18) -15418 ENSMUSG00000108422.1 ENSMUSG00000108422 ENSMUST00000206927 Gm44765 TEC Interval_113413 chr4 54722850 54723475 + 0 NA Intergenic Intergenic 12538 ENSMUSG00000084710.1 ENSMUSG00000084710 ENSMUST00000122761 Gm24628 misc_RNA Interval_109422 chr3 142236157 142236388 + 0 NA Intergenic Intergenic -51521 ENSMUSG00000105015.1 ENSMUSG00000105015 ENSMUST00000196903 Gm6059 processed_pseudogene Interval_12694 chr10 4355664 4356201 + 0 NA exon (ENSMUSG00000038587.10, exon 3 of 4) protein_coding-exon (ENSMUSG00000038587.10, exon 3 of 4) 17943 ENSMUSG00000075327.10 ENSMUSG00000075327 ENSMUST00000215860 Zbtb2 protein_coding Interval_18360 chr10 85205360 85205817 + 0 NA Intergenic Intergenic -54232 ENSMUSG00000020038.10 ENSMUSG00000020038 ENSMUST00000214675 Cry1 protein_coding Interval_81606 chr18 62045639 62046283 + 0 NA Intergenic Intergenic 68002 ENSMUSG00000045629.8 ENSMUSG00000045629 ENSMUST00000236759 Sh3tc2 protein_coding Interval_53117 chr14 54546887 54548198 + 0 NA intron (ENSMUSG00000022177.9, intron 2 of 2) protein_coding-intron (ENSMUSG00000022177.9, intron 5 of 9) 6903 ENSMUSG00000022177.9 ENSMUSG00000022177 ENSMUST00000228043 Haus4 protein_coding Interval_46273 chr13 63299858 63301517 + 0 NA promoter-TSS (ENSMUSG00000065475.2) miRNA-promoter-TSS (ENSMUSG00000065475.2) -25 ENSMUSG00000065475.2 ENSMUSG00000065475 ENSMUST00000083541 Mir27b miRNA Interval_146226 chr7 44839316 44841106 + 0 NA TTS (ENSMUSG00000074141.13) protein_coding-TTS (ENSMUSG00000074141.13) 8323 ENSMUSG00000038520.15 ENSMUSG00000038520 ENSMUST00000133846 Tbc1d17 protein_coding Interval_60593 chr15 75565536 75568014 + 0 NA promoter-TSS (ENSMUSG00000022577.17) protein_coding-promoter-TSS (ENSMUSG00000022577.17) 271 ENSMUSG00000022577.17 ENSMUSG00000022577 ENSMUST00000228961 Ly6h protein_coding Interval_135446 chr6 39395041 39395325 + 0 NA Intergenic Intergenic 9547 ENSMUSG00000029922.15 ENSMUSG00000029922 ENSMUST00000114822 Mkrn1 protein_coding Interval_63028 chr15 98720627 98720890 + 0 NA exon (ENSMUSG00000003354.6, exon 5 of 8) protein_coding-exon (ENSMUSG00000003354.6, exon 5 of 8) 7394 ENSMUSG00000003355.7 ENSMUSG00000003355 ENSMUST00000229562 Fkbp11 protein_coding Interval_154879 chr8 24572836 24573527 + 0 NA intron (ENSMUSG00000031549.16, intron 1 of 9) protein_coding-intron (ENSMUSG00000031549.16, intron 1 of 9) -18584 ENSMUSG00000031549.16 ENSMUSG00000031549 ENSMUST00000138155 Ido2 protein_coding Interval_88210 chr19 60699174 60699694 + 0 NA Intergenic Intergenic -56553 ENSMUSG00000072437.4 ENSMUSG00000072437 ENSMUST00000088237 Nanos1 protein_coding Interval_128072 chr5 110700244 110700772 + 0 NA intron (ENSMUSG00000029505.17, intron 21 of 50) protein_coding-intron (ENSMUSG00000029505.17, intron 22 of 51) -8327 ENSMUSG00000077254.1 ENSMUSG00000077254 ENSMUST00000104066 Gm26079 snoRNA Interval_106204 chr3 94593494 94593802 + 0 NA Intergenic Intergenic 4182 ENSMUSG00000105522.1 ENSMUSG00000105522 ENSMUST00000200572 Gm15235 processed_pseudogene Interval_33171 chr11 114923934 114924679 + 0 NA exon (ENSMUSG00000063193.9, exon 4 of 4) protein_coding-exon (ENSMUSG00000063193.9, exon 4 of 4) -8565 ENSMUSG00000083677.1 ENSMUSG00000083677 ENSMUST00000119016 Gm11699 processed_pseudogene Interval_106323 chr3 95369862 95370757 + 0 NA Intergenic Intergenic -13220 ENSMUSG00000015697.14 ENSMUSG00000015697 ENSMUST00000152260 Setdb1 protein_coding Interval_38981 chr12 84256887 84259020 + 0 NA TTS (ENSMUSG00000042962.5) processed_pseudogene-TTS (ENSMUSG00000042962.5) 1020 ENSMUSG00000042962.5 ENSMUSG00000042962 ENSMUST00000058103 Gm5436 processed_pseudogene Interval_138581 chr6 89569514 89569712 + 0 NA intron (ENSMUSG00000030086.16, intron 2 of 2) protein_coding-intron (ENSMUSG00000030086.16, intron 2 of 7) 25991 ENSMUSG00000030086.16 ENSMUSG00000030086 ENSMUST00000204654 Chchd6 protein_coding Interval_7087 chr1 125639016 125639471 + 0 NA Intergenic Intergenic 29373 ENSMUSG00000101015.1 ENSMUSG00000101015 ENSMUST00000191239 Gm18444 processed_pseudogene Interval_47265 chr13 80106988 80107538 + 0 NA intron (ENSMUSG00000100168.2, intron 1 of 2) lincRNA-intron (ENSMUSG00000100168.2, intron 1 of 2) -7845 ENSMUSG00000114287.1 ENSMUSG00000114287 ENSMUST00000224279 Gm5197 processed_pseudogene Interval_142833 chr6 146285477 146285712 + 0 NA intron (ENSMUSG00000030287.15, intron 36 of 55) protein_coding-intron (ENSMUSG00000030287.15, intron 37 of 56) -14614 ENSMUSG00000107801.1 ENSMUSG00000107801 ENSMUST00000203251 Gm44086 TEC Interval_18481 chr10 86492221 86492421 + 0 NA promoter-TSS (ENSMUSG00000059602.14) protein_coding-promoter-TSS (ENSMUSG00000059602.14) -424 ENSMUSG00000059602.14 ENSMUSG00000059602 ENSMUST00000139197 Syn3 protein_coding Interval_105471 chr3 86847236 86848183 + 0 NA intron (ENSMUSG00000028078.14, intron 2 of 15) protein_coding-intron (ENSMUSG00000028078.14, intron 2 of 15) -16783 ENSMUSG00000104074.1 ENSMUSG00000104074 ENSMUST00000195159 Gm37025 processed_pseudogene Interval_53881 chr14 63105391 63105758 + 0 NA Intergenic Intergenic 6038 ENSMUSG00000064399.1 ENSMUSG00000064399 ENSMUST00000082465 Gm23629 snRNA Interval_33816 chr11 118722112 118722310 + 0 NA intron (ENSMUSG00000025576.17, intron 2 of 14) protein_coding-intron (ENSMUSG00000025576.17, intron 2 of 14) -69161 ENSMUSG00000085059.1 ENSMUSG00000085059 ENSMUST00000146016 Gm11750 lincRNA Interval_108734 chr3 130794263 130794862 + 0 NA Intergenic Intergenic 35297 ENSMUSG00000105716.1 ENSMUSG00000105716 ENSMUST00000196697 Gm43522 lincRNA Interval_17848 chr10 80376250 80377048 + 0 NA TTS (ENSMUSG00000112648.1) processed_pseudogene-TTS (ENSMUSG00000112648.1) 903 ENSMUSG00000112648.1 ENSMUSG00000112648 ENSMUST00000218129 Gm47793 processed_pseudogene Interval_9680 chr1 160991544 160991841 + 0 NA intron (ENSMUSG00000026715.12, intron 2 of 4) protein_coding-intron (ENSMUSG00000026715.12, intron 3 of 7) 5934 ENSMUSG00000103222.1 ENSMUSG00000103222 ENSMUST00000194761 Gm37729 TEC Interval_172745 chrX 48222726 48223293 + 0 NA Intergenic Intergenic -7277 ENSMUSG00000064806.2 ENSMUSG00000064806 ENSMUST00000082872 Gm24038 snRNA Interval_158270 chr8 80731583 80732621 + 0 NA intron (ENSMUSG00000031715.14, intron 3 of 19) protein_coding-intron (ENSMUSG00000031715.14, intron 3 of 23) -2965 ENSMUSG00000110142.1 ENSMUSG00000110142 ENSMUST00000209804 Gm45872 TEC Interval_101641 chr3 8453524 8454143 + 0 NA Intergenic Intergenic 9202 ENSMUSG00000102463.1 ENSMUSG00000102463 ENSMUST00000194834 1700003N22Rik processed_pseudogene Interval_59256 chr15 50128778 50129752 + 0 NA Intergenic Intergenic -157633 ENSMUSG00000115478.1 ENSMUSG00000115478 ENSMUST00000227182 Gm49198 lincRNA Interval_143558 chr7 12793443 12795254 + 0 NA exon (ENSMUSG00000110124.1, exon 1 of 1) processed_pseudogene-exon (ENSMUSG00000110124.1, exon 1 of 1) 521 ENSMUSG00000110124.1 ENSMUSG00000110124 ENSMUST00000211441 Gm4247 processed_pseudogene Interval_27485 chr11 68150864 68152054 + 0 NA intron (ENSMUSG00000020903.13, intron 6 of 6) protein_coding-intron (ENSMUSG00000020903.13, intron 7 of 7) 44694 ENSMUSG00000087242.2 ENSMUSG00000087242 ENSMUST00000152781 C78197 antisense Interval_27756 chr11 69802680 69804379 + 0 NA TTS (ENSMUSG00000089876.3) protein_coding-TTS (ENSMUSG00000089876.3) -1672 ENSMUSG00000042826.13 ENSMUSG00000042826 ENSMUST00000102585 Fgf11 protein_coding Interval_45916 chr13 59226035 59226297 + 0 NA Intergenic Intergenic -8994 ENSMUSG00000114478.1 ENSMUSG00000114478 ENSMUST00000225924 Gm34558 lincRNA Interval_137619 chr6 76115628 76116377 + 0 NA Intergenic Intergenic -5625 ENSMUSG00000107685.1 ENSMUSG00000107685 ENSMUST00000204107 Gm5995 processed_pseudogene Interval_22888 chr11 17135161 17135364 + 0 NA Intergenic Intergenic -39618 ENSMUSG00000082099.1 ENSMUSG00000082099 ENSMUST00000121971 Gm12013 processed_pseudogene Interval_55499 chr14 89253491 89253775 + 0 NA Intergenic Intergenic -97392 ENSMUSG00000102164.1 ENSMUSG00000102164 ENSMUST00000192706 Gm36946 TEC Interval_133756 chr6 11666717 11667103 + 0 NA Intergenic Intergenic 240573 ENSMUSG00000029632.7 ENSMUSG00000029632 ENSMUST00000204714 Ndufa4 protein_coding Interval_107099 chr3 103526354 103527696 + 0 NA Intergenic Intergenic -48353 ENSMUSG00000027849.19 ENSMUSG00000027849 ENSMUST00000118563 Syt6 protein_coding Interval_65904 chr16 30143118 30143400 + 0 NA Intergenic Intergenic -1314 ENSMUSG00000084444.1 ENSMUSG00000084444 ENSMUST00000122495 n-R5s32 rRNA Interval_106612 chr3 97750561 97752420 + 0 NA intron (ENSMUSG00000038170.15, intron 10 of 16) protein_coding-intron (ENSMUSG00000038170.15, intron 10 of 16) 20961 ENSMUSG00000105245.1 ENSMUSG00000105245 ENSMUST00000200435 Gm31305 antisense Interval_141199 chr6 125559572 125559785 + 0 NA intron (ENSMUSG00000001930.17, intron 3 of 14) protein_coding-intron (ENSMUSG00000001930.17, intron 4 of 10) 6715 ENSMUSG00000001930.17 ENSMUSG00000001930 ENSMUST00000146264 Vwf protein_coding Interval_135098 chr6 35350825 35351078 + 0 NA Intergenic Intergenic 20105 ENSMUSG00000107341.1 ENSMUSG00000107341 ENSMUST00000201560 1700065J11Rik lincRNA Interval_38931 chr12 83897815 83898149 + 0 NA intron (ENSMUSG00000021224.15, intron 1 of 8) protein_coding-intron (ENSMUSG00000021224.15, intron 1 of 12) -22100 ENSMUSG00000113423.1 ENSMUSG00000113423 ENSMUST00000220790 Gm3791 processed_pseudogene Interval_151202 chr7 119519607 119520074 + 0 NA exon (ENSMUSG00000030972.6, exon 2 of 18) protein_coding-exon (ENSMUSG00000030972.6, exon 2 of 18) -5538 ENSMUSG00000098014.1 ENSMUSG00000098014 ENSMUST00000182878 Gm26967 sense_intronic Interval_102625 chr3 28636360 28637717 + 0 NA intron (ENSMUSG00000027692.16, intron 20 of 30) protein_coding-intron (ENSMUSG00000027692.16, intron 20 of 30) -84479 ENSMUSG00000027690.13 ENSMUSG00000027690 ENSMUST00000169047 Slc2a2 protein_coding Interval_53920 chr14 63392829 63393162 + 0 NA intron (ENSMUSG00000014453.4, intron 1 of 12) protein_coding-intron (ENSMUSG00000014453.4, intron 1 of 12) -16577 ENSMUSG00000014453.4 ENSMUSG00000014453 ENSMUST00000224965 Blk protein_coding Interval_121163 chr4 153682907 153683933 + 0 NA Intergenic Intergenic -192964 ENSMUSG00000077519.1 ENSMUSG00000077519 ENSMUST00000104331 Gm25880 snoRNA Interval_161868 chr8 123325671 123326526 + 0 NA intron (ENSMUSG00000092329.1, intron 1 of 15) protein_coding-intron (ENSMUSG00000092329.1, intron 1 of 15) -24153 ENSMUSG00000010154.7 ENSMUSG00000010154 ENSMUST00000212404 Spire2 protein_coding Interval_26831 chr11 60924503 60924978 + 0 NA intron (ENSMUSG00000042549.10, intron 1 of 1) antisense-intron (ENSMUSG00000042549.10, intron 1 of 1) 7127 ENSMUSG00000042549.10 ENSMUSG00000042549 ENSMUST00000123544 Map2k3os antisense Interval_146985 chr7 57149088 57149759 + 0 NA intron (ENSMUSG00000055026.13, intron 3 of 9) protein_coding-intron (ENSMUSG00000055026.13, intron 3 of 9) 123342 ENSMUSG00000108377.1 ENSMUSG00000108377 ENSMUST00000206642 Gm18642 processed_pseudogene Interval_172554 chrX 36741186 36741402 + 0 NA Intergenic Intergenic -2417 ENSMUSG00000037636.6 ENSMUSG00000037636 ENSMUST00000133699 Slc25a43 protein_coding Interval_89896 chr2 26300467 26301125 + 0 NA Intergenic Intergenic -6358 ENSMUSG00000048038.8 ENSMUSG00000048038 ENSMUST00000057224 Ccdc187 protein_coding Interval_123017 chr5 28466697 28467176 + 0 NA promoter-TSS (ENSMUSG00000097726.7) antisense-promoter-TSS (ENSMUSG00000097726.7) -48 ENSMUSG00000097726.7 ENSMUSG00000097726 ENSMUST00000181202 9530036O11Rik antisense Interval_84967 chr19 20573186 20574041 + 0 NA intron (ENSMUSG00000053279.8, intron 4 of 7) protein_coding-intron (ENSMUSG00000053279.8, intron 4 of 7) 13144 ENSMUSG00000047168.6 ENSMUSG00000047168 ENSMUST00000053717 Gm6684 processed_pseudogene Interval_31292 chr11 99379653 99380241 + 0 NA Intergenic Intergenic -5044 ENSMUSG00000055937.1 ENSMUSG00000055937 ENSMUST00000006963 Krt28 protein_coding Interval_55920 chr14 102423784 102423995 + 0 NA Intergenic Intergenic -13134 ENSMUSG00000115696.1 ENSMUSG00000115696 ENSMUST00000228104 Gm49292 lincRNA Interval_44937 chr13 50354315 50354512 + 0 NA intron (ENSMUSG00000101136.1, intron 1 of 1) antisense-intron (ENSMUSG00000101136.1, intron 1 of 1) -76708 ENSMUSG00000037816.10 ENSMUSG00000037816 ENSMUST00000176543 Fbxw17 protein_coding Interval_81378 chr18 59872843 59873028 + 0 NA Intergenic Intergenic -17473 ENSMUSG00000117701.1 ENSMUSG00000117701 ENSMUST00000237574 Gm38695 lincRNA Interval_96957 chr2 129908691 129909675 + 0 NA Intergenic Intergenic -39385 ENSMUSG00000100255.1 ENSMUSG00000100255 ENSMUST00000187719 Gm28196 lincRNA Interval_32726 chr11 110088269 110088615 + 0 NA intron (ENSMUSG00000041828.15, intron 3 of 38) protein_coding-intron (ENSMUSG00000041828.15, intron 3 of 38) -23069 ENSMUSG00000041828.15 ENSMUSG00000041828 ENSMUST00000106662 Abca8a protein_coding Interval_93071 chr2 69924982 69925190 + 0 NA intron (ENSMUSG00000044308.17, intron 5 of 7) protein_coding-intron (ENSMUSG00000044308.17, intron 5 of 38) 39358 ENSMUSG00000085735.1 ENSMUSG00000085735 ENSMUST00000129114 Mettl5os antisense Interval_69596 chr16 94525983 94527433 + 0 NA promoter-TSS (ENSMUSG00000022898.13) protein_coding-promoter-TSS (ENSMUSG00000022898.13) -22321 ENSMUSG00000022898.13 ENSMUSG00000022898 ENSMUST00000142988 Vps26c protein_coding Interval_164892 chr9 42861892 42862327 + 0 NA promoter-TSS (ENSMUSG00000076355.2) miRNA-promoter-TSS (ENSMUSG00000076355.2) 20 ENSMUSG00000076355.2 ENSMUSG00000076355 ENSMUST00000102400 Gm27509 miRNA Interval_21242 chr10 127425837 127427413 + 0 NA intron (ENSMUSG00000025404.15, intron 1 of 23) protein_coding-intron (ENSMUSG00000025404.15, intron 1 of 23) -22233 ENSMUSG00000089369.1 ENSMUSG00000089369 ENSMUST00000158744 Gm23819 snRNA Interval_130975 chr5 134350483 134351660 + 0 NA Intergenic Intergenic 24617 ENSMUSG00000093311.1 ENSMUSG00000093311 ENSMUST00000175570 Mir3965 miRNA Interval_60323 chr15 72874143 72874459 + 0 NA intron (ENSMUSG00000047921.17, intron 16 of 16) protein_coding-intron (ENSMUSG00000047921.17, intron 16 of 21) -39056 ENSMUSG00000096173.2 ENSMUSG00000096173 ENSMUST00000166418 Gm3150 processed_pseudogene Interval_53457 chr14 57656248 57657000 + 0 NA intron (ENSMUSG00000114942.1, intron 6 of 8) protein_coding-intron (ENSMUSG00000021952.16, intron 1 of 22) 8806 ENSMUSG00000021952.16 ENSMUSG00000021952 ENSMUST00000173638 Xpo4 protein_coding Interval_146811 chr7 52084434 52085015 + 0 NA Intergenic Intergenic -9145 ENSMUSG00000088722.1 ENSMUSG00000088722 ENSMUST00000158097 Gm22211 snRNA Interval_29137 chr11 80562435 80563457 + 0 NA intron (ENSMUSG00000035441.14, intron 20 of 21) protein_coding-intron (ENSMUSG00000035441.14, intron 20 of 21) -53840 ENSMUSG00000085078.1 ENSMUSG00000085078 ENSMUST00000133400 C030013C21Rik sense_intronic Interval_149902 chr7 102458511 102459809 + 0 NA promoter-TSS (ENSMUSG00000030978.10) protein_coding-promoter-TSS (ENSMUSG00000030978.10) 915 ENSMUSG00000109940.1 ENSMUSG00000109940 ENSMUST00000209955 Gm45399 TEC Interval_113801 chr4 58911152 58912944 + 0 NA promoter-TSS (ENSMUSG00000050812.18) protein_coding-promoter-TSS (ENSMUSG00000050812.18) -25977 ENSMUSG00000092753.1 ENSMUSG00000092753 ENSMUST00000175012 Gm26400 rRNA Interval_113012 chr4 46845797 46846599 + 0 NA intron (ENSMUSG00000039809.10, intron 2 of 4) protein_coding-intron (ENSMUSG00000039809.10, intron 3 of 18) 13704 ENSMUSG00000039809.10 ENSMUSG00000039809 ENSMUST00000206773 Gabbr2 protein_coding Interval_158371 chr8 83100202 83100948 + 0 NA Intergenic Intergenic -13618 ENSMUSG00000109876.1 ENSMUSG00000109876 ENSMUST00000211485 Gm45449 antisense Interval_138990 chr6 94049178 94049466 + 0 NA intron (ENSMUSG00000045095.16, intron 1 of 24) protein_coding-intron (ENSMUSG00000045095.16, intron 1 of 21) -136818 ENSMUSG00000045095.16 ENSMUSG00000045095 ENSMUST00000203034 Magi1 protein_coding Interval_93796 chr2 76954647 76955507 + 0 NA exon (ENSMUSG00000051747.15, exon 13 of 191) protein_coding-exon (ENSMUSG00000051747.15, exon 13 of 191) 67619 ENSMUSG00000044033.16 ENSMUSG00000044033 ENSMUST00000111833 Ccdc141 protein_coding Interval_150340 chr7 109720530 109721155 + 0 NA intron (ENSMUSG00000031022.15, intron 2 of 5) protein_coding-intron (ENSMUSG00000031022.15, intron 2 of 5) 174 ENSMUSG00000031022.15 ENSMUSG00000031022 ENSMUST00000145211 BC051019 protein_coding Interval_107798 chr3 115283755 115284349 + 0 NA Intergenic Intergenic -107502 ENSMUSG00000088346.1 ENSMUSG00000088346 ENSMUST00000157721 Gm22337 snoRNA Interval_73267 chr17 35873673 35874455 + 0 NA exon (ENSMUSG00000034595.17, exon 3 of 3) protein_coding-exon (ENSMUSG00000034595.17, exon 3 of 3) 5661 ENSMUSG00000034595.17 ENSMUSG00000034595 ENSMUST00000190496 Ppp1r18 protein_coding Interval_71260 chr17 21717127 21717809 + 0 NA intron (ENSMUSG00000067928.6, intron 3 of 5) protein_coding-intron (ENSMUSG00000067928.6, intron 3 of 5) 9727 ENSMUSG00000067928.6 ENSMUSG00000067928 ENSMUST00000073312 Zfp760 protein_coding Interval_173467 chrX 94206651 94207089 + 0 NA intron (ENSMUSG00000035150.15, intron 4 of 6) protein_coding-intron (ENSMUSG00000035150.15, intron 4 of 11) 5992 ENSMUSG00000035150.15 ENSMUSG00000035150 ENSMUST00000127963 Eif2s3x protein_coding Interval_141709 chr6 133931803 133932486 + 0 NA exon (ENSMUSG00000107771.1, exon 1 of 1) processed_pseudogene-exon (ENSMUSG00000107771.1, exon 1 of 1) 265 ENSMUSG00000107771.1 ENSMUSG00000107771 ENSMUST00000203939 Gm8956 processed_pseudogene Interval_128719 chr5 114908555 114909329 + 0 NA intron (ENSMUSG00000029561.17, intron 4 of 4) protein_coding-intron (ENSMUSG00000029561.17, intron 5 of 5) 11410 ENSMUSG00000029561.17 ENSMUSG00000029561 ENSMUST00000129707 Oasl2 protein_coding Interval_46393 chr13 64457381 64459412 + 0 NA promoter-TSS (ENSMUSG00000113109.1) transcribed_processed_pseudogene-promoter-TSS (ENSMUSG00000113109.1) 527 ENSMUSG00000113109.1 ENSMUSG00000113109 ENSMUST00000222331 Gm7712 transcribed_processed_pseudogene Interval_50013 chr13 119724723 119725087 + 0 NA exon (ENSMUSG00000095930.1, exon 2 of 2) protein_coding-exon (ENSMUSG00000095930.1, exon 2 of 2) 13489 ENSMUSG00000095930.1 ENSMUSG00000095930 ENSMUST00000178973 Nim1k protein_coding Interval_137271 chr6 70931386 70931986 + 0 NA Intergenic Intergenic -12759 ENSMUSG00000051896.4 ENSMUSG00000051896 ENSMUST00000063456 Tex37 protein_coding Interval_78854 chr18 20981657 20982012 + 0 NA intron (ENSMUSG00000033107.6, intron 5 of 5) protein_coding-intron (ENSMUSG00000033107.6, intron 5 of 5) -20261 ENSMUSG00000024317.15 ENSMUSG00000024317 ENSMUST00000234169 Rnf138 protein_coding Interval_13568 chr10 19821328 19822068 + 0 NA Intergenic Intergenic 29761 ENSMUSG00000050473.5 ENSMUSG00000050473 ENSMUST00000059805 Slc35d3 protein_coding Interval_17807 chr10 80192122 80193551 + 0 NA Intergenic Intergenic 13354 ENSMUSG00000003070.6 ENSMUSG00000003070 ENSMUST00000003154 Efna2 protein_coding Interval_159864 chr8 104432759 104435319 + 0 NA intron (ENSMUSG00000035770.8, intron 4 of 13) protein_coding-intron (ENSMUSG00000035770.8, intron 4 of 12) -4221 ENSMUSG00000110689.1 ENSMUSG00000110689 ENSMUST00000211988 Gm45731 TEC Interval_100097 chr2 167058649 167059208 + 0 NA intron (ENSMUSG00000039501.14, intron 2 of 7) protein_coding-intron (ENSMUSG00000039501.14, intron 2 of 13) 1497 ENSMUSG00000039501.14 ENSMUSG00000039501 ENSMUST00000135967 Znfx1 protein_coding Interval_132699 chr5 147248803 147249195 + 0 NA intron (ENSMUSG00000092570.7, intron 1 of 5) antisense-intron (ENSMUSG00000092570.7, intron 1 of 3) -20960 ENSMUSG00000029644.7 ENSMUSG00000029644 ENSMUST00000085591 Pdx1 protein_coding Interval_24350 chr11 32613233 32613626 + 0 NA intron (ENSMUSG00000020272.8, intron 14 of 18) protein_coding-intron (ENSMUSG00000020272.8, intron 14 of 18) 24834 ENSMUSG00000020272.8 ENSMUSG00000020272 ENSMUST00000143397 Stk10 protein_coding Interval_171018 chr9 113757967 113759941 + 0 NA intron (ENSMUSG00000033392.16, intron 1 of 10) protein_coding-intron (ENSMUSG00000033392.16, intron 1 of 15) 17344 ENSMUSG00000087992.1 ENSMUSG00000087992 ENSMUST00000157367 Gm25059 snoRNA Interval_29930 chr11 87816808 87817824 + 0 NA TTS (ENSMUSG00000009356.12) protein_coding-TTS (ENSMUSG00000009356.12) 189 ENSMUSG00000009356.12 ENSMUSG00000009356 ENSMUST00000136446 Lpo protein_coding Interval_97922 chr2 145785308 145786641 + 0 NA promoter-TSS (ENSMUSG00000001768.16) protein_coding-promoter-TSS (ENSMUSG00000001768.16) -84249 ENSMUSG00000081722.1 ENSMUSG00000081722 ENSMUST00000119964 Gm11763 processed_pseudogene Interval_12138 chr1 190019424 190019686 + 0 NA Intergenic Intergenic -97302 ENSMUSG00000026603.13 ENSMUSG00000026603 ENSMUST00000144452 Smyd2 protein_coding Interval_31164 chr11 98568504 98570169 + 0 NA Intergenic Intergenic 13893 ENSMUSG00000017195.15 ENSMUSG00000017195 ENSMUST00000126236 Zpbp2 protein_coding Interval_138367 chr6 87652727 87653005 + 0 NA exon (ENSMUSG00000030051.10, exon 6 of 6) protein_coding-exon (ENSMUSG00000030051.10, exon 6 of 6) -4888 ENSMUSG00000107593.1 ENSMUSG00000107593 ENSMUST00000204112 Gm44097 antisense Interval_150610 chr7 112788126 112788874 + 0 NA intron (ENSMUSG00000055320.18, intron 2 of 13) protein_coding-intron (ENSMUSG00000055320.18, intron 2 of 13) 74549 ENSMUSG00000106046.1 ENSMUSG00000106046 ENSMUST00000199696 Gm44462 miRNA Interval_55494 chr14 88947918 88948120 + 0 NA Intergenic Intergenic 311986 ENSMUSG00000115623.1 ENSMUSG00000115623 ENSMUST00000227074 Gm41225 lincRNA Interval_162006 chr8 124379506 124379745 + 0 NA intron (ENSMUSG00000050751.14, intron 3 of 6) protein_coding-intron (ENSMUSG00000050751.14, intron 3 of 6) 22387 ENSMUSG00000064664.1 ENSMUSG00000064664 ENSMUST00000082730 Gm24459 snRNA Interval_88293 chr2 3444685 3446093 + 0 NA intron (ENSMUSG00000026648.18, intron 3 of 6) protein_coding-intron (ENSMUSG00000026648.18, intron 11 of 15) -7560 ENSMUSG00000026648.18 ENSMUSG00000026648 ENSMUST00000152468 Dclre1c protein_coding Interval_54884 chr14 75980447 75980672 + 0 NA intron (ENSMUSG00000067995.4, intron 4 of 7) protein_coding-intron (ENSMUSG00000067995.4, intron 4 of 7) -7940 ENSMUSG00000065799.1 ENSMUSG00000065799 ENSMUST00000083865 Gm25517 snoRNA Interval_43736 chr13 35870037 35870708 + 0 NA intron (ENSMUSG00000059288.14, intron 5 of 6) protein_coding-intron (ENSMUSG00000059288.14, intron 8 of 9) -35085 ENSMUSG00000114270.1 ENSMUSG00000114270 ENSMUST00000225277 Gm48746 lincRNA Interval_89735 chr2 25099346 25100008 + 0 NA Intergenic Intergenic -4546 ENSMUSG00000036805.13 ENSMUSG00000036805 ENSMUST00000044018 Noxa1 protein_coding Interval_174576 chrX 159269007 159269309 + 0 NA intron (ENSMUSG00000031309.15, intron 1 of 5) protein_coding-intron (ENSMUSG00000031309.15, intron 1 of 21) -7118 ENSMUSG00000031309.15 ENSMUSG00000031309 ENSMUST00000149939 Rps6ka3 protein_coding Interval_145876 chr7 41125770 41125941 + 0 NA TTS (ENSMUSG00000101650.1) unprocessed_pseudogene-TTS (ENSMUSG00000101650.1) 4633 ENSMUSG00000101650.1 ENSMUSG00000101650 ENSMUST00000188803 Gm6820 unprocessed_pseudogene Interval_122723 chr5 24894389 24895012 + 0 NA intron (ENSMUSG00000028944.14, intron 1 of 9) protein_coding-intron (ENSMUSG00000028944.14, intron 5 of 15) -7869 ENSMUSG00000086446.1 ENSMUSG00000086446 ENSMUST00000134633 Prkag2os1 antisense Interval_112021 chr4 33290248 33291165 + 0 NA promoter-TSS (ENSMUSG00000040128.9) protein_coding-promoter-TSS (ENSMUSG00000040128.9) 19431 ENSMUSG00000086127.1 ENSMUSG00000086127 ENSMUST00000132553 Gm11934 processed_transcript Interval_13869 chr10 24106901 24107557 + 0 NA Intergenic Intergenic 2305 ENSMUSG00000037424.6 ENSMUSG00000037424 ENSMUST00000041180 Taar9 protein_coding Interval_164277 chr9 34953404 34954477 + 0 NA intron (ENSMUSG00000032036.15, intron 4 of 13) protein_coding-intron (ENSMUSG00000032036.15, intron 5 of 16) -6079 ENSMUSG00000089465.1 ENSMUSG00000089465 ENSMUST00000158840 Gm23702 rRNA Interval_4277 chr1 72346006 72346665 + 0 NA exon (ENSMUSG00000026187.9, exon 14 of 21) protein_coding-exon (ENSMUSG00000026187.9, exon 14 of 21) 38908 ENSMUSG00000026187.9 ENSMUSG00000026187 ENSMUST00000027379 Xrcc5 protein_coding Interval_121807 chr5 8400725 8401409 + 0 NA promoter-TSS (ENSMUSG00000002297.16) protein_coding-promoter-TSS (ENSMUSG00000002297.16) 21602 ENSMUSG00000002297.16 ENSMUSG00000002297 ENSMUST00000198785 Dbf4 protein_coding Interval_173186 chrX 73948647 73950136 + 0 NA promoter-TSS (ENSMUSG00000031386.14) protein_coding-promoter-TSS (ENSMUSG00000031386.14) -1959 ENSMUSG00000031386.14 ENSMUSG00000031386 ENSMUST00000128325 Hcfc1 protein_coding Interval_161542 chr8 121092584 121093162 + 0 NA exon (ENSMUSG00000031816.15, exon 8 of 8) protein_coding-exon (ENSMUSG00000031816.15, exon 8 of 8) -8167 ENSMUSG00000098560.1 ENSMUSG00000098560 ENSMUST00000184096 Gm27530 miRNA Interval_107749 chr3 113053887 113054138 + 0 NA exon (ENSMUSG00000045952.3, exon 1 of 1) processed_pseudogene-exon (ENSMUSG00000045952.3, exon 1 of 1) 273 ENSMUSG00000045952.3 ENSMUSG00000045952 ENSMUST00000055878 Gm5548 processed_pseudogene Interval_52898 chr14 51920031 51920742 + 0 NA TTS (ENSMUSG00000068392.3) protein_coding-TTS (ENSMUSG00000068392.3) 1625 ENSMUSG00000008813.13 ENSMUSG00000008813 ENSMUST00000177625 Tppp2 protein_coding Interval_84810 chr19 16970430 16971433 + 0 NA intron (ENSMUSG00000039126.10, intron 1 of 6) protein_coding-intron (ENSMUSG00000039126.10, intron 1 of 19) 51598 ENSMUSG00000118126.1 ENSMUSG00000118126 ENSMUST00000236072 Gm32341 lincRNA Interval_122690 chr5 24678081 24679419 + 0 NA Intergenic Intergenic -7237 ENSMUSG00000028954.11 ENSMUSG00000028954 ENSMUST00000200337 Nub1 protein_coding Interval_120090 chr4 141758258 141759004 + 0 NA intron (ENSMUSG00000040706.4, intron 6 of 6) protein_coding-intron (ENSMUSG00000040706.4, intron 6 of 6) 11959 ENSMUSG00000040706.4 ENSMUSG00000040706 ENSMUST00000038161 Agmat protein_coding Interval_84447 chr19 10972302 10973826 + 0 NA intron (ENSMUSG00000024731.15, intron 1 of 7) protein_coding-intron (ENSMUSG00000024731.15, intron 1 of 8) 1581 ENSMUSG00000024731.15 ENSMUSG00000024731 ENSMUST00000190246 Ms4a10 protein_coding Interval_103298 chr3 38257412 38258197 + 0 NA Intergenic Intergenic 10280 ENSMUSG00000092986.2 ENSMUSG00000092986 ENSMUST00000175245 Gm25574 misc_RNA Interval_106399 chr3 95938725 95939268 + 0 NA TTS (ENSMUSG00000015749.12) protein_coding-TTS (ENSMUSG00000015749.12) -1090 ENSMUSG00000106262.1 ENSMUSG00000106262 ENSMUST00000196705 Gm43375 TEC Interval_142925 chr6 147008183 147008817 + 0 NA intron (ENSMUSG00000016487.15, intron 2 of 7) protein_coding-intron (ENSMUSG00000016487.15, intron 12 of 26) -14476 ENSMUSG00000107969.1 ENSMUSG00000107969 ENSMUST00000205056 Gm44085 antisense Interval_171167 chr9 114913179 114913577 + 0 NA intron (ENSMUSG00000050627.13, intron 4 of 7) protein_coding-intron (ENSMUSG00000050627.13, intron 4 of 6) 20609 ENSMUSG00000050627.13 ENSMUSG00000050627 ENSMUST00000146266 Gpd1l protein_coding Interval_3816 chr1 63237662 63238161 + 0 NA Intergenic Intergenic 10588 ENSMUSG00000102536.1 ENSMUSG00000102536 ENSMUST00000194370 1700039I01Rik TEC Interval_51745 chr14 31896589 31897113 + 0 NA Intergenic Intergenic -9677 ENSMUSG00000046005.4 ENSMUSG00000046005 ENSMUST00000143315 D830044D21Rik lincRNA Interval_165860 chr9 53883060 53885219 + 0 NA promoter-TSS (ENSMUSG00000059830.3) processed_pseudogene-promoter-TSS (ENSMUSG00000059830.3) 55 ENSMUSG00000059830.3 ENSMUSG00000059830 ENSMUST00000077997 Gm16380 processed_pseudogene Interval_127595 chr5 105681848 105682535 + 0 NA Intergenic Intergenic -49198 ENSMUSG00000046079.16 ENSMUSG00000046079 ENSMUST00000134605 Lrrc8d protein_coding Interval_44432 chr13 44805035 44806757 + 0 NA intron (ENSMUSG00000038518.15, intron 2 of 4) protein_coding-intron (ENSMUSG00000038518.15, intron 2 of 18) 32387 ENSMUSG00000088189.1 ENSMUSG00000088189 ENSMUST00000157564 Gm22213 snoRNA Interval_18709 chr10 89533021 89533919 + 0 NA exon (ENSMUSG00000047638.15, exon 1 of 10) protein_coding-exon (ENSMUSG00000047638.15, exon 1 of 10) 115 ENSMUSG00000047638.15 ENSMUSG00000047638 ENSMUST00000105297 Nr1h4 protein_coding Interval_138468 chr6 88464864 88465967 + 0 NA promoter-TSS (ENSMUSG00000030079.15) protein_coding-promoter-TSS (ENSMUSG00000030079.15) -312 ENSMUSG00000030079.15 ENSMUSG00000030079 ENSMUST00000129035 Ruvbl1 protein_coding Interval_143529 chr7 12118779 12119027 + 0 NA Intergenic Intergenic -4738 ENSMUSG00000109914.1 ENSMUSG00000109914 ENSMUST00000210346 Gm45498 processed_pseudogene Interval_55253 chr14 79683622 79684289 + 0 NA Intergenic Intergenic 18455 ENSMUSG00000115740.1 ENSMUSG00000115740 ENSMUST00000226962 Gm49042 lincRNA Interval_15480 chr10 48490744 48491023 + 0 NA Intergenic Intergenic 45473 ENSMUSG00000111262.1 ENSMUSG00000111262 ENSMUST00000217071 Gm47354 lincRNA Interval_145887 chr7 41413539 41413727 + 0 NA intron (ENSMUSG00000066537.5, intron 5 of 6) protein_coding-intron (ENSMUSG00000092592.1, intron 6 of 7) 19935 ENSMUSG00000091864.1 ENSMUSG00000091864 ENSMUST00000170929 Gm17102 lincRNA Interval_77431 chr17 88644584 88645344 + 0 NA intron (ENSMUSG00000033855.15, intron 3 of 3) protein_coding-intron (ENSMUSG00000033855.15, intron 3 of 4) 18409 ENSMUSG00000033855.15 ENSMUSG00000033855 ENSMUST00000112216 Ston1 protein_coding Interval_54266 chr14 67008041 67009464 + 0 NA exon (ENSMUSG00000022051.15, exon 1 of 6) protein_coding-exon (ENSMUSG00000022051.15, exon 1 of 6) -8847 ENSMUSG00000022051.15 ENSMUSG00000022051 ENSMUST00000129605 Bnip3l protein_coding Interval_127669 chr5 106457408 106459494 + 0 NA promoter-TSS (ENSMUSG00000034384.11) protein_coding-promoter-TSS (ENSMUSG00000034384.11) -285 ENSMUSG00000034384.11 ENSMUSG00000034384 ENSMUST00000086795 Barhl2 protein_coding Interval_46893 chr13 73254592 73254789 + 0 NA Intergenic Intergenic -5789 ENSMUSG00000021604.15 ENSMUSG00000021604 ENSMUST00000022095 Irx4 protein_coding Interval_85252 chr19 24173799 24174715 + 0 NA promoter-TSS (ENSMUSG00000024812.11) protein_coding-promoter-TSS (ENSMUSG00000024812.11) 20187 ENSMUSG00000118371.1 ENSMUSG00000118371 ENSMUST00000237530 Gm50308 processed_pseudogene Interval_68469 chr16 77438009 77438259 + 0 NA intron (ENSMUSG00000090386.10, intron 3 of 5) processed_transcript-intron (ENSMUSG00000090386.10, intron 2 of 4) -16314 ENSMUSG00000102344.1 ENSMUSG00000102344 ENSMUST00000192654 9430053O09Rik TEC Interval_169999 chr9 103513778 103514584 + 0 NA intron (ENSMUSG00000042757.16, intron 3 of 3) protein_coding-intron (ENSMUSG00000042757.16, intron 2 of 4) -7606 ENSMUSG00000111278.1 ENSMUSG00000111278 ENSMUST00000214196 Gm32743 antisense Interval_59285 chr15 50753348 50754076 + 0 NA intron (ENSMUSG00000038679.16, intron 7 of 8) protein_coding-intron (ENSMUSG00000038679.16, intron 5 of 6) 135402 ENSMUSG00000084458.1 ENSMUSG00000084458 ENSMUST00000122509 Mir1907 miRNA Interval_93252 chr2 71489420 71489659 + 0 NA intron (ENSMUSG00000041921.16, intron 1 of 8) protein_coding-intron (ENSMUSG00000041921.16, intron 1 of 9) -5732 ENSMUSG00000088066.1 ENSMUSG00000088066 ENSMUST00000157441 Gm23253 snRNA Interval_22556 chr11 11754925 11755738 + 0 NA intron (ENSMUSG00000018654.17, intron 5 of 7) protein_coding-intron (ENSMUSG00000018654.17, intron 4 of 6) 53631 ENSMUSG00000035455.12 ENSMUSG00000035455 ENSMUST00000150714 Fignl1 protein_coding Interval_90124 chr2 28361153 28361448 + 0 NA Intergenic Intergenic -37250 ENSMUSG00000087196.1 ENSMUSG00000087196 ENSMUST00000144634 Gm13373 lincRNA Interval_169282 chr9 96131694 96131905 + 0 NA intron (ENSMUSG00000041440.18, intron 2 of 3) protein_coding-intron (ENSMUSG00000041440.18, intron 2 of 15) -39117 ENSMUSG00000041440.18 ENSMUSG00000041440 ENSMUST00000189249 Gk5 protein_coding Interval_1114 chr1 15822330 15822838 + 0 NA TTS (ENSMUSG00000025925.14) protein_coding-TTS (ENSMUSG00000025925.14) 14943 ENSMUSG00000025925.14 ENSMUSG00000025925 ENSMUST00000188684 Terf1 protein_coding Interval_102245 chr3 19904590 19905428 + 0 NA Intergenic Intergenic -8787 ENSMUSG00000103781.1 ENSMUSG00000103781 ENSMUST00000194901 Gm37523 processed_pseudogene Interval_38733 chr12 81701905 81702457 + 0 NA Intergenic Intergenic 17871 ENSMUSG00000113184.1 ENSMUSG00000113184 ENSMUST00000221438 Gm49654 lincRNA Interval_41734 chr12 118519777 118521475 + 0 NA intron (ENSMUSG00000113875.1, intron 3 of 3) lincRNA-intron (ENSMUSG00000113875.1, intron 3 of 3) 9567 ENSMUSG00000113875.1 ENSMUSG00000113875 ENSMUST00000222459 D230030E09Rik lincRNA Interval_58024 chr15 26429737 26429935 + 0 NA Intergenic Intergenic 42117 ENSMUSG00000022269.13 ENSMUSG00000022269 ENSMUST00000155819 Marchf11 protein_coding Interval_172523 chrX 23924302 23924806 + 0 NA Intergenic Intergenic 31770 ENSMUSG00000068113.6 ENSMUSG00000068113 ENSMUST00000163718 Gm4907 protein_coding Interval_14347 chr10 31297315 31299412 + 0 NA Intergenic Intergenic -15042 ENSMUSG00000000295.13 ENSMUSG00000000295 ENSMUST00000159659 Hddc2 protein_coding Interval_37172 chr12 59172925 59174021 + 0 NA intron (ENSMUSG00000021000.17, intron 4 of 7) protein_coding-intron (ENSMUSG00000021000.17, intron 18 of 24) 30963 ENSMUSG00000035329.7 ENSMUSG00000035329 ENSMUST00000161351 Fbxo33 protein_coding Interval_113898 chr4 59712610 59713302 + 0 NA intron (ENSMUSG00000045071.14, intron 2 of 3) protein_coding-intron (ENSMUSG00000045071.14, intron 2 of 2) -20302 ENSMUSG00000045071.14 ENSMUSG00000045071 ENSMUST00000221633 E130308A19Rik protein_coding Interval_43848 chr13 37547933 37548953 + 0 NA TTS (ENSMUSG00000114665.1) lincRNA-TTS (ENSMUSG00000114665.1) 665 ENSMUSG00000114665.1 ENSMUSG00000114665 ENSMUST00000225390 Lncbate6 lincRNA Interval_13844 chr10 23786276 23787839 + 0 NA promoter-TSS (ENSMUSG00000077440.1) snoRNA-promoter-TSS (ENSMUSG00000077440.1) 145 ENSMUSG00000061983.7 ENSMUSG00000061983 ENSMUST00000217883 Rps12 protein_coding Interval_41284 chr12 112429365 112429603 + 0 NA exon (ENSMUSG00000113189.1, exon 3 of 3) lincRNA-exon (ENSMUSG00000113189.1, exon 3 of 3) 5854 ENSMUSG00000113189.1 ENSMUSG00000113189 ENSMUST00000223085 B020018J22Rik lincRNA Interval_66401 chr16 33643425 33645016 + 0 NA intron (ENSMUSG00000035506.16, intron 9 of 10) protein_coding-intron (ENSMUSG00000035506.16, intron 9 of 12) 27830 ENSMUSG00000035506.16 ENSMUSG00000035506 ENSMUST00000149291 Slc12a8 protein_coding Interval_118932 chr4 134527468 134528480 + 0 NA TTS (ENSMUSG00000046671.18) protein_coding-TTS (ENSMUSG00000046671.18) 7122 ENSMUSG00000046671.18 ENSMUSG00000046671 ENSMUST00000129836 Mtfr1l protein_coding Interval_35308 chr12 20351176 20351426 + 0 NA Intergenic Intergenic 31696 ENSMUSG00000116715.1 ENSMUSG00000116715 ENSMUST00000232034 Gm40881 unprocessed_pseudogene Interval_85953 chr19 34163324 34163512 + 0 NA intron (ENSMUSG00000024774.16, intron 1 of 5) protein_coding-intron (ENSMUSG00000024774.16, intron 1 of 5) -8501 ENSMUSG00000024774.16 ENSMUSG00000024774 ENSMUST00000159887 Ankrd22 protein_coding Interval_17242 chr10 75237378 75237731 + 0 NA intron (ENSMUSG00000033444.14, intron 2 of 3) protein_coding-intron (ENSMUSG00000033444.14, intron 2 of 15) -23413 ENSMUSG00000033444.14 ENSMUSG00000033444 ENSMUST00000218644 Specc1l protein_coding Interval_2393 chr1 38936747 38937151 + 0 NA Intergenic Intergenic -2254 ENSMUSG00000067604.8 ENSMUSG00000067604 ENSMUST00000160214 Nms protein_coding Interval_137110 chr6 67494424 67494823 + 0 NA Intergenic Intergenic -2768 ENSMUSG00000049093.9 ENSMUSG00000049093 ENSMUST00000118364 Il23r protein_coding Interval_76723 chr17 83697602 83697856 + 0 NA Intergenic Intergenic -31435 ENSMUSG00000055817.18 ENSMUSG00000055817 ENSMUST00000175920 Mta3 protein_coding Interval_168795 chr9 87152362 87153728 + 0 NA intron (ENSMUSG00000042761.14, intron 2 of 4) protein_coding-intron (ENSMUSG00000042761.14, intron 1 of 3) 8702 ENSMUSG00000042761.14 ENSMUSG00000042761 ENSMUST00000179313 Mrap2 protein_coding Interval_128391 chr5 113082911 113083187 + 0 NA Intergenic Intergenic -2658 ENSMUSG00000029352.14 ENSMUSG00000029352 ENSMUST00000136352 Crybb3 protein_coding Interval_70463 chr17 10386587 10386800 + 0 NA Intergenic Intergenic 62091 ENSMUSG00000099384.6 ENSMUSG00000099384 ENSMUST00000188715 1700110C19Rik lincRNA Interval_48760 chr13 102874408 102875896 + 0 NA intron (ENSMUSG00000034751.17, intron 3 of 27) protein_coding-intron (ENSMUSG00000034751.17, intron 2 of 27) 112717 ENSMUSG00000090329.1 ENSMUSG00000090329 ENSMUST00000170645 Gm17160 antisense Interval_159686 chr8 97195812 97196623 + 0 NA Intergenic Intergenic -19778 ENSMUSG00000110552.1 ENSMUSG00000110552 ENSMUST00000213049 Gm45788 lincRNA Interval_42544 chr13 15026096 15027866 + 0 NA Intergenic Intergenic 83837 ENSMUSG00000114176.1 ENSMUSG00000114176 ENSMUST00000221755 Gm48329 processed_pseudogene Interval_78498 chr18 13712182 13713118 + 0 NA intron (ENSMUSG00000024420.9, intron 4 of 5) protein_coding-intron (ENSMUSG00000024420.9, intron 7 of 7) -111250 ENSMUSG00000117608.1 ENSMUSG00000117608 ENSMUST00000234112 AC103362.1 lincRNA Interval_80097 chr18 37496909 37497242 + 0 NA promoter-TSS (ENSMUSG00000043313.6) protein_coding-promoter-TSS (ENSMUSG00000043313.6) 84 ENSMUSG00000043313.6 ENSMUSG00000043313 ENSMUST00000059571 Pcdhb19 protein_coding Interval_5796 chr1 91916106 91916549 + 0 NA promoter-TSS (ENSMUSG00000102745.1) TEC-promoter-TSS (ENSMUSG00000102745.1) 67 ENSMUSG00000102745.1 ENSMUSG00000102745 ENSMUST00000193764 Gm37600 TEC Interval_128836 chr5 115523868 115524643 + 0 NA intron (ENSMUSG00000029528.19, intron 1 of 10) protein_coding-intron (ENSMUSG00000029528.19, intron 1 of 10) 8992 ENSMUSG00000086849.1 ENSMUSG00000086849 ENSMUST00000149608 Gm13840 sense_intronic Interval_143833 chr7 16623232 16623963 + 0 NA TTS (ENSMUSG00000064745.1) snRNA-TTS (ENSMUSG00000064745.1) 1080 ENSMUSG00000064745.1 ENSMUSG00000064745 ENSMUST00000082811 Gm24708 snRNA Interval_18556 chr10 87552208 87553235 + 0 NA intron (ENSMUSG00000020051.17, intron 1 of 4) protein_coding-intron (ENSMUSG00000020051.17, intron 3 of 12) 30791 ENSMUSG00000020051.17 ENSMUSG00000020051 ENSMUST00000217864 Pah protein_coding Interval_13398 chr10 17770423 17770590 + 0 NA Intergenic Intergenic 24822 ENSMUSG00000093672.2 ENSMUSG00000093672 ENSMUST00000176132 Gm20655 antisense Interval_121083 chr4 152733632 152733875 + 0 NA Intergenic Intergenic 36213 ENSMUSG00000073699.3 ENSMUSG00000073699 ENSMUST00000143133 Gm833 lincRNA Interval_14050 chr10 26139221 26139862 + 0 NA Intergenic Intergenic 31752 ENSMUSG00000112808.1 ENSMUSG00000112808 ENSMUST00000218296 Gm4739 processed_pseudogene Interval_35676 chr12 27341179 27343719 + 0 NA exon (ENSMUSG00000063632.6, exon 1 of 1) protein_coding-exon (ENSMUSG00000063632.6, exon 1 of 1) 125 ENSMUSG00000063632.6 ENSMUSG00000063632 ENSMUST00000079063 Sox11 protein_coding Interval_60449 chr15 73820979 73821564 + 0 NA intron (ENSMUSG00000072487.11, intron 2 of 29) protein_coding-intron (ENSMUSG00000072487.11, intron 1 of 10) 9712 ENSMUSG00000072487.11 ENSMUSG00000072487 ENSMUST00000136698 Mroh5 protein_coding Interval_171536 chr9 119080086 119080450 + 0 NA intron (ENSMUSG00000010660.3, intron 3 of 14) protein_coding-intron (ENSMUSG00000010660.3, intron 3 of 14) -5965 ENSMUSG00000010660.3 ENSMUSG00000010660 ENSMUST00000214491 Plcd1 protein_coding Interval_99445 chr2 161177248 161178383 + 0 NA Intergenic Intergenic -1249 ENSMUSG00000067745.4 ENSMUSG00000067745 ENSMUST00000131401 Gm14243 lincRNA Interval_2200 chr1 36985753 36988844 + 0 NA Intergenic Intergenic -18141 ENSMUSG00000095944.1 ENSMUSG00000095944 ENSMUST00000177688 n-R5s210 rRNA Interval_4074 chr1 67411620 67411889 + 0 NA Intergenic Intergenic 154530 ENSMUSG00000077745.1 ENSMUSG00000077745 ENSMUST00000104557 Gm26342 snoRNA Interval_62538 chr15 94495637 94495823 + 0 NA Intergenic Intergenic 47763 ENSMUSG00000033356.3 ENSMUSG00000033356 ENSMUST00000134061 Pus7l protein_coding Interval_127503 chr5 104589760 104590605 + 0 NA Intergenic Intergenic 63724 ENSMUSG00000118625.1 ENSMUSG00000118625 ENSMUST00000239343 AC123687.1 transcribed_unprocessed_pseudogene Interval_172529 chrX 26431033 26431443 + 0 NA Intergenic Intergenic 61424 ENSMUSG00000080819.1 ENSMUSG00000080819 ENSMUST00000120759 Gm2005 unprocessed_pseudogene Interval_167668 chr9 71735115 71735301 + 0 NA intron (ENSMUSG00000032232.14, intron 1 of 17) protein_coding-intron (ENSMUSG00000032232.14, intron 1 of 18) 92329 ENSMUSG00000099220.1 ENSMUSG00000099220 ENSMUST00000183453 Gm27220 processed_pseudogene Interval_148059 chr7 78924216 78924911 + 0 NA promoter-TSS (ENSMUSG00000108670.1) TEC-promoter-TSS (ENSMUSG00000108670.1) -677 ENSMUSG00000108670.1 ENSMUSG00000108670 ENSMUST00000206812 Gm44815 TEC Interval_57614 chr15 12832541 12834801 + 0 NA intron (ENSMUSG00000022191.16, intron 4 of 4) protein_coding-intron (ENSMUSG00000022191.16, intron 3 of 34) -8425 ENSMUSG00000104911.1 ENSMUSG00000104911 ENSMUST00000198820 Gm47288 miRNA Interval_61914 chr15 85205670 85207152 + 0 NA intron (ENSMUSG00000006369.14, intron 1 of 14) protein_coding-intron (ENSMUSG00000006369.14, intron 1 of 16) -50279 ENSMUSG00000115924.1 ENSMUSG00000115924 ENSMUST00000229478 Gm19277 lincRNA Interval_54185 chr14 66048159 66048513 + 0 NA intron (ENSMUSG00000022039.6, intron 12 of 12) protein_coding-intron (ENSMUSG00000022039.6, intron 12 of 20) 3256 ENSMUSG00000068165.3 ENSMUSG00000068165 ENSMUST00000089275 Gm10233 processed_pseudogene Interval_124533 chr5 50113739 50114189 + 0 NA Intergenic Intergenic -37369 ENSMUSG00000104870.1 ENSMUSG00000104870 ENSMUST00000197958 4930448I18Rik lincRNA Interval_138744 chr6 91585582 91585845 + 0 NA Intergenic Intergenic -9045 ENSMUSG00000108335.1 ENSMUSG00000108335 ENSMUST00000206407 Gm45215 processed_pseudogene Interval_150823 chr7 115169388 115169821 + 0 NA Intergenic Intergenic -2452 ENSMUSG00000108401.1 ENSMUSG00000108401 ENSMUST00000205555 Rpl19-ps10 processed_pseudogene Interval_57593 chr15 12665832 12666477 + 0 NA intron (ENSMUSG00000022197.16, intron 2 of 4) protein_coding-intron (ENSMUSG00000022197.16, intron 2 of 4) -28970 ENSMUSG00000095842.1 ENSMUSG00000095842 ENSMUST00000178350 Gm24302 miRNA Interval_74026 chr17 46141867 46142540 + 0 NA intron (ENSMUSG00000023966.8, intron 1 of 4) protein_coding-intron (ENSMUSG00000023966.8, intron 1 of 4) -5408 ENSMUSG00000023966.8 ENSMUSG00000023966 ENSMUST00000152354 Rsph9 protein_coding Interval_29961 chr11 88394283 88395077 + 0 NA intron (ENSMUSG00000069769.13, intron 3 of 5) protein_coding-intron (ENSMUSG00000069769.13, intron 8 of 13) 38389 ENSMUSG00000085246.1 ENSMUSG00000085246 ENSMUST00000143208 Gm15893 antisense Interval_52852 chr14 51097755 51099501 + 0 NA intron (ENSMUSG00000021876.15, intron 1 of 1) protein_coding-intron (ENSMUSG00000021876.15, intron 1 of 1) 2269 ENSMUSG00000021876.15 ENSMUSG00000021876 ENSMUST00000169895 Rnase4 protein_coding Interval_31247 chr11 99115948 99116868 + 0 NA Intergenic Intergenic 38669 ENSMUSG00000037944.8 ENSMUSG00000037944 ENSMUST00000103134 Ccr7 protein_coding Interval_114555 chr4 82464233 82464645 + 0 NA intron (ENSMUSG00000008575.17, intron 2 of 4) protein_coding-intron (ENSMUSG00000008575.17, intron 2 of 11) 25029 ENSMUSG00000084595.1 ENSMUSG00000084595 ENSMUST00000122646 n-R5s188 rRNA Interval_9960 chr1 164389415 164389895 + 0 NA intron (ENSMUSG00000026575.15, intron 13 of 15) protein_coding-intron (ENSMUSG00000026575.15, intron 11 of 12) -35058 ENSMUSG00000103493.1 ENSMUSG00000103493 ENSMUST00000194180 Gm37411 TEC Interval_88657 chr2 8902957 8903359 + 0 NA Intergenic Intergenic 139326 ENSMUSG00000082953.3 ENSMUSG00000082953 ENSMUST00000120466 Gm13217 unprocessed_pseudogene Interval_144246 chr7 23871167 23871813 + 0 NA exon (ENSMUSG00000109210.1, exon 1 of 1) processed_pseudogene-exon (ENSMUSG00000109210.1, exon 1 of 1) 637 ENSMUSG00000109210.1 ENSMUSG00000109210 ENSMUST00000207027 Gm18206 processed_pseudogene Interval_88466 chr2 5363692 5364381 + 0 NA intron (ENSMUSG00000039145.16, intron 3 of 10) protein_coding-intron (ENSMUSG00000039145.16, intron 3 of 10) 80386 ENSMUSG00000080820.1 ENSMUSG00000080820 ENSMUST00000117204 Gm13197 processed_pseudogene Interval_53704 chr14 61004900 61005874 + 0 NA intron (ENSMUSG00000060548.13, intron 3 of 5) protein_coding-intron (ENSMUSG00000060548.13, intron 3 of 9) 32504 ENSMUSG00000060548.13 ENSMUSG00000060548 ENSMUST00000225730 Tnfrsf19 protein_coding Interval_69144 chr16 90933976 90935360 + 0 NA promoter-TSS (ENSMUSG00000022972.10) protein_coding-promoter-TSS (ENSMUSG00000022972.10) -299 ENSMUSG00000116607.1 ENSMUSG00000116607 ENSMUST00000232326 4930534H18Rik bidirectional_promoter_lncRNA Interval_130660 chr5 129574770 129575296 + 0 NA Intergenic Intergenic 18886 ENSMUSG00000104814.1 ENSMUSG00000104814 ENSMUST00000196287 Gm42979 TEC Interval_59958 chr15 62222658 62224224 + 0 NA intron (ENSMUSG00000097039.8, intron 1 of 2) lincRNA-intron (ENSMUSG00000097039.8, intron 5 of 8) -4109 ENSMUSG00000101167.1 ENSMUSG00000101167 ENSMUST00000151919 Macroh2a3 processed_pseudogene Interval_41669 chr12 117597136 117597314 + 0 NA intron (ENSMUSG00000041992.9, intron 6 of 8) protein_coding-intron (ENSMUSG00000041992.9, intron 8 of 27) -4814 ENSMUSG00000113575.1 ENSMUSG00000113575 ENSMUST00000223270 A930023M06Rik sense_intronic Interval_59853 chr15 59805163 59805506 + 0 NA Intergenic Intergenic -10375 ENSMUSG00000115426.1 ENSMUSG00000115426 ENSMUST00000228865 Gm19510 lincRNA Interval_8994 chr1 152982808 152983058 + 0 NA intron (ENSMUSG00000042751.14, intron 2 of 8) protein_coding-intron (ENSMUSG00000042751.14, intron 1 of 10) -32836 ENSMUSG00000100702.1 ENSMUSG00000100702 ENSMUST00000187136 Gm8976 processed_pseudogene Interval_172099 chrX 7563136 7563339 + 0 NA intron (ENSMUSG00000039556.16, intron 2 of 2) protein_coding-intron (ENSMUSG00000039556.16, intron 3 of 3) 11046 ENSMUSG00000039556.16 ENSMUSG00000039556 ENSMUST00000123090 Ppp1r3f protein_coding Interval_140066 chr6 113748142 113749490 + 0 NA exon (ENSMUSG00000030302.16, exon 20 of 20) protein_coding-exon (ENSMUSG00000030302.16, exon 20 of 20) -8089 ENSMUSG00000030298.10 ENSMUSG00000030298 ENSMUST00000205135 Sec13 protein_coding Interval_107497 chr3 108132251 108132601 + 0 NA intron (ENSMUSG00000000001.4, intron 1 of 8) protein_coding-intron (ENSMUSG00000000001.4, intron 1 of 8) 13720 ENSMUSG00000000001.4 ENSMUSG00000000001 ENSMUST00000000001 Gnai3 protein_coding Interval_45633 chr13 56385856 56386889 + 0 NA Intergenic Intergenic 23472 ENSMUSG00000074885.4 ENSMUSG00000074885 ENSMUST00000099476 Gm10782 lincRNA Interval_161321 chr8 119725941 119726148 + 0 NA intron (ENSMUSG00000034112.9, intron 4 of 5) protein_coding-intron (ENSMUSG00000034112.9, intron 4 of 26) 11590 ENSMUSG00000110445.1 ENSMUSG00000110445 ENSMUST00000212203 Gm45747 TEC Interval_122145 chr5 18089721 18090193 + 0 NA Intergenic Intergenic 127408 ENSMUSG00000028777.8 ENSMUSG00000028777 ENSMUST00000030561 Gnat3 protein_coding Interval_155778 chr8 37467719 37467944 + 0 NA Intergenic Intergenic -66811 ENSMUSG00000109820.1 ENSMUSG00000109820 ENSMUST00000210980 Gm45654 processed_pseudogene Interval_170595 chr9 109125479 109125734 + 0 NA Intergenic Intergenic 20105 ENSMUSG00000053646.13 ENSMUSG00000053646 ENSMUST00000194734 Plxnb1 protein_coding Interval_53306 chr14 55917377 55917649 + 0 NA Intergenic Intergenic -17533 ENSMUSG00000022223.9 ENSMUSG00000022223 ENSMUST00000227677 Sdr39u1 protein_coding Interval_19177 chr10 95312916 95313792 + 0 NA exon (ENSMUSG00000112744.1, exon 1 of 1) TEC-exon (ENSMUSG00000112744.1, exon 1 of 1) 1499 ENSMUSG00000112744.1 ENSMUSG00000112744 ENSMUST00000219461 Gm48880 TEC Interval_98496 chr2 152781451 152781864 + 0 NA exon (ENSMUSG00000007659.18, exon 3 of 3) protein_coding-exon (ENSMUSG00000007659.18, exon 3 of 3) -8768 ENSMUSG00000093306.1 ENSMUSG00000093306 ENSMUST00000175565 Gm23802 miRNA Interval_92495 chr2 60118938 60119161 + 0 NA intron (ENSMUSG00000026987.16, intron 1 of 2) protein_coding-intron (ENSMUSG00000026987.16, intron 1 of 34) -6047 ENSMUSG00000086603.1 ENSMUSG00000086603 ENSMUST00000131198 Gm13620 lincRNA Interval_63349 chr15 100482389 100482672 + 0 NA exon (ENSMUSG00000044636.6, exon 5 of 5) protein_coding-exon (ENSMUSG00000044636.6, exon 5 of 5) 10123 ENSMUSG00000037353.9 ENSMUSG00000037353 ENSMUST00000229372 Letmd1 protein_coding Interval_131500 chr5 137595422 137597488 + 0 NA TTS (ENSMUSG00000037221.13) protein_coding-TTS (ENSMUSG00000037221.13) 4236 ENSMUSG00000037221.13 ENSMUSG00000037221 ENSMUST00000196366 Mospd3 protein_coding Interval_22669 chr11 12702746 12703220 + 0 NA Intergenic Intergenic 10170 ENSMUSG00000088509.1 ENSMUSG00000088509 ENSMUST00000157884 Gm22789 snoRNA Interval_111831 chr4 31642636 31642825 + 0 NA Intergenic Intergenic 262258 ENSMUSG00000082254.1 ENSMUSG00000082254 ENSMUST00000118967 Gm11922 processed_pseudogene Interval_128411 chr5 113181601 113181945 + 0 NA intron (ENSMUSG00000051339.10, intron 5 of 12) protein_coding-intron (ENSMUSG00000051339.10, intron 5 of 12) -15539 ENSMUSG00000106206.1 ENSMUSG00000106206 ENSMUST00000196549 Gm43094 TEC Interval_125780 chr5 74094715 74096306 + 0 NA TTS (ENSMUSG00000106943.2) processed_transcript-TTS (ENSMUSG00000106943.2) 1980 ENSMUSG00000093355.1 ENSMUSG00000093355 ENSMUST00000175614 Snora26 snoRNA Interval_115973 chr4 106699780 106700496 + 0 NA promoter-TSS (ENSMUSG00000047502.14) protein_coding-promoter-TSS (ENSMUSG00000047502.14) -21452 ENSMUSG00000025413.13 ENSMUSG00000025413 ENSMUST00000132572 Ttc4 protein_coding Interval_59608 chr15 56016959 56017131 + 0 NA Intergenic Intergenic 13001 ENSMUSG00000115361.1 ENSMUSG00000115361 ENSMUST00000226266 Gm49211 lincRNA Interval_39752 chr12 96863745 96864019 + 0 NA Intergenic Intergenic 59176 ENSMUSG00000043483.4 ENSMUSG00000043483 ENSMUST00000052882 Gm6863 processed_pseudogene Interval_67491 chr16 49854958 49856291 + 0 NA promoter-TSS (ENSMUSG00000055447.19) protein_coding-promoter-TSS (ENSMUSG00000055447.19) -21 ENSMUSG00000055447.19 ENSMUSG00000055447 ENSMUST00000229104 Cd47 protein_coding Interval_71696 chr17 25489103 25489320 + 0 NA TTS (ENSMUSG00000050824.12) protein_coding-TTS (ENSMUSG00000050824.12) 8004 ENSMUSG00000050824.12 ENSMUSG00000050824 ENSMUST00000165183 Sstr5 protein_coding Interval_102719 chr3 30565502 30567264 + 0 NA Intergenic Intergenic -2140 ENSMUSG00000102256.1 ENSMUSG00000102256 ENSMUST00000191792 Gm38258 lincRNA Interval_155654 chr8 35692865 35693156 + 0 NA Intergenic Intergenic 26939 ENSMUSG00000110335.1 ENSMUSG00000110335 ENSMUST00000209585 1700015I17Rik lincRNA Interval_30185 chr11 90317245 90317656 + 0 NA Intergenic Intergenic 67994 ENSMUSG00000003948.17 ENSMUSG00000003948 ENSMUST00000004050 Mmd protein_coding Interval_77078 chr17 86299301 86300218 + 0 NA intron (ENSMUSG00000045038.14, intron 1 of 14) protein_coding-intron (ENSMUSG00000045038.14, intron 2 of 15) -12581 ENSMUSG00000100738.1 ENSMUSG00000100738 ENSMUST00000191222 2010106C02Rik antisense Interval_11335 chr1 181022157 181022754 + 0 NA TTS (ENSMUSG00000103516.1) unprocessed_pseudogene-TTS (ENSMUSG00000103516.1) 318 ENSMUSG00000103516.1 ENSMUSG00000103516 ENSMUST00000195102 Gm37431 unprocessed_pseudogene Interval_111068 chr4 11604648 11605139 + 0 NA exon (ENSMUSG00000078773.11, exon 9 of 15) protein_coding-exon (ENSMUSG00000078773.11, exon 9 of 15) 10114 ENSMUSG00000086103.1 ENSMUSG00000086103 ENSMUST00000148576 Gm11832 antisense Interval_106583 chr3 97524464 97525541 + 0 NA Intergenic Intergenic -84930 ENSMUSG00000105004.1 ENSMUSG00000105004 ENSMUST00000198613 Gm43075 TEC Interval_57292 chr15 8506164 8506695 + 0 NA Intergenic Intergenic 14043 ENSMUSG00000095663.2 ENSMUSG00000095663 ENSMUST00000179217 Gm2310 lincRNA Interval_103755 chr3 52381534 52382522 + 0 NA Intergenic Intergenic -43380 ENSMUSG00000103454.1 ENSMUSG00000103454 ENSMUST00000194115 Gm38098 processed_pseudogene Interval_164447 chr9 37089333 37090993 + 0 NA intron (ENSMUSG00000035934.16, intron 1 of 4) protein_coding-intron (ENSMUSG00000035934.16, intron 1 of 12) -28493 ENSMUSG00000110722.1 ENSMUSG00000110722 ENSMUST00000215174 Gm48716 antisense Interval_100875 chr2 173049595 173050211 + 0 NA Intergenic Intergenic -15323 ENSMUSG00000087442.1 ENSMUSG00000087442 ENSMUST00000139677 Gm14453 antisense Interval_55464 chr14 87547234 87548298 + 0 NA Intergenic Intergenic 8667 ENSMUSG00000022019.16 ENSMUSG00000022019 ENSMUST00000227304 Tdrd3 protein_coding Interval_163045 chr9 14778356 14779011 + 0 NA TTS (ENSMUSG00000031931.4) protein_coding-TTS (ENSMUSG00000031931.4) 6173 ENSMUSG00000031931.4 ENSMUSG00000031931 ENSMUST00000214882 Ankrd49 protein_coding Interval_112923 chr4 46097179 46097724 + 0 NA intron (ENSMUSG00000028328.13, intron 8 of 9) protein_coding-intron (ENSMUSG00000028328.13, intron 8 of 9) -20729 ENSMUSG00000088069.1 ENSMUSG00000088069 ENSMUST00000157444 Gm23250 misc_RNA Interval_167523 chr9 70229854 70230959 + 0 NA intron (ENSMUSG00000032220.10, intron 1 of 17) protein_coding-intron (ENSMUSG00000032220.10, intron 1 of 27) 23056 ENSMUSG00000032220.10 ENSMUSG00000032220 ENSMUST00000034745 Myo1e protein_coding Interval_29247 chr11 82210254 82210515 + 0 NA intron (ENSMUSG00000020702.13, intron 7 of 10) protein_coding-intron (ENSMUSG00000020702.13, intron 7 of 10) 95199 ENSMUSG00000009185.2 ENSMUSG00000009185 ENSMUST00000009329 Ccl8 protein_coding Interval_136832 chr6 61126681 61127451 + 0 NA Intergenic Intergenic 20841 ENSMUSG00000107652.1 ENSMUSG00000107652 ENSMUST00000203274 Gm43894 lincRNA Interval_117786 chr4 126222394 126223086 + 0 NA Intergenic Intergenic 10808 ENSMUSG00000028849.17 ENSMUSG00000028849 ENSMUST00000131579 Map7d1 protein_coding Interval_98096 chr2 148036811 148037237 + 0 NA intron (ENSMUSG00000086141.7, intron 1 of 4) lincRNA-intron (ENSMUSG00000086141.7, intron 1 of 4) 3179 ENSMUSG00000086141.7 ENSMUSG00000086141 ENSMUST00000132070 9030622O22Rik lincRNA Interval_5962 chr1 93563165 93563439 + 0 NA intron (ENSMUSG00000034066.13, intron 4 of 12) protein_coding-intron (ENSMUSG00000034066.13, intron 4 of 26) 31487 ENSMUSG00000103854.1 ENSMUSG00000103854 ENSMUST00000194919 Gm37250 TEC Interval_89708 chr2 24888831 24891470 + 0 NA exon (ENSMUSG00000102875.1, exon 1 of 1) TEC-exon (ENSMUSG00000102875.1, exon 1 of 1) 3716 ENSMUSG00000102875.1 ENSMUSG00000102875 ENSMUST00000192134 Gm37139 TEC Interval_98638 chr2 153722983 153723474 + 0 NA intron (ENSMUSG00000082079.2, intron 15 of 18) protein_coding-intron (ENSMUSG00000082079.2, intron 15 of 18) -18374 ENSMUSG00000027479.14 ENSMUSG00000027479 ENSMUST00000123570 Mapre1 protein_coding Interval_169766 chr9 101063652 101063878 + 0 NA Intergenic Intergenic 10223 ENSMUSG00000100563.1 ENSMUSG00000100563 ENSMUST00000185770 Gm3096 processed_pseudogene Interval_172552 chrX 36644554 36646114 + 0 NA promoter-TSS (ENSMUSG00000059708.12) protein_coding-promoter-TSS (ENSMUSG00000059708.12) -238 ENSMUSG00000059708.12 ENSMUSG00000059708 ENSMUST00000133980 Akap17b protein_coding Interval_132786 chr5 147865784 147866225 + 0 NA intron (ENSMUSG00000029649.10, intron 2 of 4) protein_coding-intron (ENSMUSG00000029649.10, intron 2 of 5) 2544 ENSMUSG00000107079.1 ENSMUSG00000107079 ENSMUST00000202304 Gm35648 processed_pseudogene Interval_86851 chr19 44344900 44346811 + 0 NA exon (ENSMUSG00000050195.8, exon 6 of 6) protein_coding-exon (ENSMUSG00000050195.8, exon 6 of 6) 12763 ENSMUSG00000050195.8 ENSMUSG00000050195 ENSMUST00000058856 Scd4 protein_coding Interval_953 chr1 13372185 13374790 + 0 NA intron (ENSMUSG00000005886.14, intron 1 of 12) protein_coding-intron (ENSMUSG00000005886.14, intron 1 of 22) -2583 ENSMUSG00000101476.1 ENSMUSG00000101476 ENSMUST00000185813 Gm29570 antisense Interval_36811 chr12 54283539 54284762 + 0 NA Intergenic Intergenic 32865 ENSMUSG00000112705.1 ENSMUSG00000112705 ENSMUST00000217997 Gm47552 lincRNA Interval_158061 chr8 78477391 78477981 + 0 NA Intergenic Intergenic 8724 ENSMUSG00000110057.1 ENSMUSG00000110057 ENSMUST00000209570 Gm2225 processed_pseudogene Interval_89234 chr2 18258903 18259638 + 0 NA intron (ENSMUSG00000026740.12, intron 6 of 9) protein_coding-intron (ENSMUSG00000026740.12, intron 7 of 10) -9427 ENSMUSG00000083070.2 ENSMUSG00000083070 ENSMUST00000120519 Gm13350 processed_pseudogene Interval_135282 chr6 38036613 38036920 + 0 NA exon (ENSMUSG00000029830.15, exon 4 of 11) protein_coding-exon (ENSMUSG00000029830.15, exon 4 of 11) -18155 ENSMUSG00000029830.15 ENSMUSG00000029830 ENSMUST00000040486 Svopl protein_coding Interval_171677 chr9 120098401 120099194 + 0 NA TTS (ENSMUSG00000111546.1) TEC-TTS (ENSMUSG00000111546.1) 3134 ENSMUSG00000111546.1 ENSMUSG00000111546 ENSMUST00000217495 Gm47050 TEC Interval_81872 chr18 65545611 65546038 + 0 NA promoter-TSS (ENSMUSG00000118179.1) processed_pseudogene-promoter-TSS (ENSMUSG00000118179.1) -284 ENSMUSG00000118179.1 ENSMUSG00000118179 ENSMUST00000237213 Gm50247 processed_pseudogene Interval_7752 chr1 133434175 133435525 + 0 NA Intergenic Intergenic -10473 ENSMUSG00000070643.11 ENSMUSG00000070643 ENSMUST00000126530 Sox13 protein_coding Interval_66133 chr16 31878328 31879260 + 0 NA promoter-TSS (ENSMUSG00000022780.5) protein_coding-promoter-TSS (ENSMUSG00000022780.5) -16 ENSMUSG00000022780.5 ENSMUSG00000022780 ENSMUST00000023464 Meltf protein_coding Interval_9331 chr1 156310441 156311250 + 0 NA promoter-TSS (ENSMUSG00000026602.9) protein_coding-promoter-TSS (ENSMUSG00000026602.9) -168 ENSMUSG00000026602.9 ENSMUSG00000026602 ENSMUST00000193020 Nphs2 protein_coding Interval_1044 chr1 14363263 14363484 + 0 NA Intergenic Intergenic -58803 ENSMUSG00000025932.14 ENSMUSG00000025932 ENSMUST00000185329 Eya1 protein_coding Interval_52220 chr14 40788785 40789685 + 0 NA Intergenic Intergenic 42008 ENSMUSG00000114933.1 ENSMUSG00000114933 ENSMUST00000225171 Gm48040 processed_pseudogene Interval_90229 chr2 29151628 29153622 + 0 NA intron (ENSMUSG00000043535.13, intron 11 of 25) protein_coding-intron (ENSMUSG00000043535.13, intron 11 of 25) 26739 ENSMUSG00000043535.13 ENSMUSG00000043535 ENSMUST00000145422 Setx protein_coding Interval_35379 chr12 21178599 21178841 + 0 NA intron (ENSMUSG00000052632.16, intron 7 of 9) protein_coding-intron (ENSMUSG00000052632.16, intron 2 of 26) 68603 ENSMUSG00000118655.1 ENSMUSG00000118655 ENSMUST00000172962 AC156032.1 processed_transcript Interval_5284 chr1 87232049 87233981 + 0 NA exon (ENSMUSG00000026254.17, exon 7 of 7) protein_coding-exon (ENSMUSG00000026254.17, exon 7 of 7) -18133 ENSMUSG00000088318.1 ENSMUSG00000088318 ENSMUST00000157693 Gm26187 snRNA Interval_3967 chr1 65150950 65151486 + 0 NA Intergenic Intergenic -28104 ENSMUSG00000044816.10 ENSMUSG00000044816 ENSMUST00000153330 D630023F18Rik protein_coding Interval_160541 chr8 110512864 110513217 + 0 NA exon (ENSMUSG00000059854.8, exon 39 of 87) protein_coding-exon (ENSMUSG00000059854.8, exon 39 of 87) 14055 ENSMUSG00000105131.1 ENSMUSG00000105131 ENSMUST00000197243 Gm47306 miRNA Interval_114152 chr4 65238379 65239097 + 0 NA intron (ENSMUSG00000028370.7, intron 9 of 21) protein_coding-intron (ENSMUSG00000028370.7, intron 9 of 21) 114564 ENSMUSG00000028370.7 ENSMUSG00000028370 ENSMUST00000084501 Pappa protein_coding Interval_144080 chr7 19342273 19343675 + 0 NA promoter-TSS (ENSMUSG00000108854.1) lincRNA-promoter-TSS (ENSMUSG00000108854.1) -459 ENSMUSG00000108854.1 ENSMUSG00000108854 ENSMUST00000208263 D830036C21Rik lincRNA Interval_4019 chr1 66644264 66644946 + 0 NA intron (ENSMUSG00000055567.18, intron 42 of 63) protein_coding-intron (ENSMUSG00000055567.18, intron 43 of 64) 47751 ENSMUSG00000103375.1 ENSMUSG00000103375 ENSMUST00000192513 Gm37181 TEC Interval_150186 chr7 107691379 107691897 + 0 NA intron (ENSMUSG00000036528.16, intron 3 of 6) protein_coding-intron (ENSMUSG00000036528.16, intron 5 of 24) 26327 ENSMUSG00000036528.16 ENSMUSG00000036528 ENSMUST00000208159 Ppfibp2 protein_coding Interval_98332 chr2 151560352 151560539 + 0 NA TTS (ENSMUSG00000032966.14) protein_coding-TTS (ENSMUSG00000032966.14) -12177 ENSMUSG00000027456.8 ENSMUSG00000027456 ENSMUST00000028950 Sdcbp2 protein_coding Interval_153343 chr7 143766647 143767176 + 0 NA promoter-TSS (ENSMUSG00000050276.7) protein_coding-promoter-TSS (ENSMUSG00000050276.7) -1335 ENSMUSG00000050276.7 ENSMUSG00000050276 ENSMUST00000208986 Mrgprg protein_coding Interval_113665 chr4 57388811 57389211 + 0 NA Intergenic Intergenic -17057 ENSMUSG00000095042.1 ENSMUSG00000095042 ENSMUST00000119266 Gm12537 processed_pseudogene Interval_119932 chr4 141000260 141001051 + 0 NA promoter-TSS (ENSMUSG00000036622.15) protein_coding-promoter-TSS (ENSMUSG00000036622.15) -56 ENSMUSG00000036622.15 ENSMUSG00000036622 ENSMUST00000137630 Atp13a2 protein_coding Interval_67305 chr16 45791315 45791628 + 0 NA promoter-TSS (ENSMUSG00000033149.17) protein_coding-promoter-TSS (ENSMUSG00000033149.17) -19188 ENSMUSG00000033149.17 ENSMUSG00000033149 ENSMUST00000136317 Phldb2 protein_coding Interval_51479 chr14 28052077 28052483 + 0 NA intron (ENSMUSG00000040640.11, intron 11 of 15) protein_coding-intron (ENSMUSG00000040640.11, intron 11 of 15) -176063 ENSMUSG00000109849.1 ENSMUSG00000109849 ENSMUST00000211470 Gm45645 antisense Interval_51097 chr14 22783602 22784083 + 0 NA intron (ENSMUSG00000063458.13, intron 6 of 6) protein_coding-intron (ENSMUSG00000063458.13, intron 5 of 6) -8598 ENSMUSG00000114967.1 ENSMUSG00000114967 ENSMUST00000224513 Gm7473 processed_pseudogene Interval_166333 chr9 58390697 58390920 + 0 NA Intergenic Intergenic 20304 ENSMUSG00000100487.1 ENSMUSG00000100487 ENSMUST00000191141 1700072B07Rik lincRNA Interval_146500 chr7 46449122 46449408 + 0 NA intron (ENSMUSG00000030839.12, intron 3 of 3) protein_coding-intron (ENSMUSG00000030839.12, intron 10 of 10) -1148 ENSMUSG00000094229.1 ENSMUSG00000094229 ENSMUST00000179018 Gm22969 snRNA Interval_15555 chr10 51334273 51335136 + 0 NA Intergenic Intergenic 95875 ENSMUSG00000111880.1 ENSMUSG00000111880 ENSMUST00000218609 Gm5040 processed_pseudogene Interval_87636 chr19 53852455 53853138 + 0 NA intron (ENSMUSG00000043639.15, intron 4 of 6) protein_coding-intron (ENSMUSG00000043639.15, intron 4 of 6) -27668 ENSMUSG00000089679.1 ENSMUSG00000089679 ENSMUST00000162724 Gm16299 antisense Interval_145977 chr7 42805044 42806070 + 0 NA Intergenic Intergenic -12032 ENSMUSG00000091926.3 ENSMUSG00000091926 ENSMUST00000169130 Vmn2r62 protein_coding Interval_54866 chr14 75894636 75895239 + 0 NA Intergenic Intergenic 47032 ENSMUSG00000065147.1 ENSMUSG00000065147 ENSMUST00000083213 Snora31 snoRNA Interval_47496 chr13 85481000 85481458 + 0 NA Intergenic Intergenic -35173 ENSMUSG00000114211.1 ENSMUSG00000114211 ENSMUST00000224871 Gm47635 processed_pseudogene Interval_9602 chr1 160124837 160125591 + 0 NA intron (ENSMUSG00000026725.17, intron 8 of 17) protein_coding-intron (ENSMUSG00000026725.17, intron 9 of 21) 22674 ENSMUSG00000026725.17 ENSMUSG00000026725 ENSMUST00000131919 Tnn protein_coding Interval_45917 chr13 59279088 59279582 + 0 NA Intergenic Intergenic -23924 ENSMUSG00000114743.1 ENSMUSG00000114743 ENSMUST00000224640 Gm34672 lincRNA Interval_43382 chr13 29930921 29931274 + 0 NA intron (ENSMUSG00000016477.18, intron 1 of 6) protein_coding-intron (ENSMUSG00000016477.18, intron 1 of 6) -9186 ENSMUSG00000086893.1 ENSMUSG00000086893 ENSMUST00000144277 Gm11365 antisense Interval_76278 chr17 78695332 78695788 + 0 NA intron (ENSMUSG00000024077.15, intron 2 of 17) protein_coding-intron (ENSMUSG00000024077.15, intron 2 of 17) 41636 ENSMUSG00000024077.15 ENSMUSG00000024077 ENSMUST00000145480 Strn protein_coding Interval_22725 chr11 14005163 14005365 + 0 NA Intergenic Intergenic -156815 ENSMUSG00000081631.1 ENSMUSG00000081631 ENSMUST00000121451 Gm12005 processed_pseudogene Interval_23969 chr11 29004604 29004814 + 0 NA Intergenic Intergenic 47985 ENSMUSG00000081695.1 ENSMUSG00000081695 ENSMUST00000121462 Rpsa-ps5 processed_pseudogene Interval_70692 chr17 13558721 13559412 + 0 NA intron (ENSMUSG00000117063.1, intron 1 of 4) lincRNA-intron (ENSMUSG00000117063.1, intron 1 of 4) -24897 ENSMUSG00000095184.1 ENSMUSG00000095184 ENSMUST00000101829 Gm26375 snRNA Interval_122014 chr5 13974585 13975629 + 0 NA Intergenic Intergenic -52787 ENSMUSG00000105528.1 ENSMUSG00000105528 ENSMUST00000197239 Gm43519 TEC Interval_56047 chr14 105134126 105134906 + 0 NA intron (ENSMUSG00000022119.15, intron 13 of 20) protein_coding-intron (ENSMUSG00000022119.15, intron 14 of 21) -4179 ENSMUSG00000022119.15 ENSMUSG00000022119 ENSMUST00000163499 Rbm26 protein_coding Interval_136140 chr6 51451987 51452500 + 0 NA intron (ENSMUSG00000029832.16, intron 2 of 2) protein_coding-intron (ENSMUSG00000029832.16, intron 2 of 3) 17641 ENSMUSG00000004980.16 ENSMUSG00000004980 ENSMUST00000205204 Hnrnpa2b1 protein_coding Interval_129313 chr5 118966987 118967416 + 0 NA Intergenic Intergenic 14862 ENSMUSG00000107144.1 ENSMUSG00000107144 ENSMUST00000202500 4930413E15Rik lincRNA Interval_30662 chr11 95755306 95755513 + 0 NA intron (ENSMUSG00000075595.9, intron 5 of 6) protein_coding-intron (ENSMUSG00000075595.9, intron 4 of 4) -6082 ENSMUSG00000082981.1 ENSMUSG00000082981 ENSMUST00000120170 Polr2k-ps processed_pseudogene Interval_86706 chr19 42779084 42780411 + 0 NA exon (ENSMUSG00000090235.1, exon 2 of 2) processed_transcript-exon (ENSMUSG00000090235.1, exon 2 of 2) 637 ENSMUSG00000090235.1 ENSMUSG00000090235 ENSMUST00000160001 Gm16244 processed_transcript Interval_108989 chr3 134119749 134120113 + 0 NA intron (ENSMUSG00000097911.2, intron 1 of 2) antisense-intron (ENSMUSG00000097911.2, intron 1 of 2) -17866 ENSMUSG00000097911.2 ENSMUSG00000097911 ENSMUST00000180471 Gm26691 antisense Interval_97502 chr2 137957770 137957982 + 0 NA Intergenic Intergenic -81045 ENSMUSG00000086214.1 ENSMUSG00000086214 ENSMUST00000134795 Gm14062 lincRNA Interval_29538 chr11 84764076 84765252 + 0 NA intron (ENSMUSG00000087407.1, intron 2 of 2) lincRNA-intron (ENSMUSG00000087407.1, intron 2 of 2) 13165 ENSMUSG00000087407.1 ENSMUSG00000087407 ENSMUST00000155046 Gm11431 lincRNA Interval_21775 chr11 4283384 4284189 + 0 NA Intergenic Intergenic -1674 ENSMUSG00000085512.1 ENSMUSG00000085512 ENSMUST00000127224 Gm11958 lincRNA Interval_7189 chr1 127624108 127624793 + 0 NA intron (ENSMUSG00000026347.13, intron 2 of 7) protein_coding-intron (ENSMUSG00000026347.13, intron 2 of 8) 55098 ENSMUSG00000026347.13 ENSMUSG00000026347 ENSMUST00000162406 Tmem163 protein_coding Interval_45817 chr13 58287846 58289267 + 0 NA intron (ENSMUSG00000097399.7, intron 2 of 4) protein_coding-intron (ENSMUSG00000060176.4, intron 16 of 16) 7365 ENSMUSG00000097399.7 ENSMUSG00000097399 ENSMUST00000190479 Gm26555 antisense Interval_17704 chr10 79661731 79662300 + 0 NA Intergenic Intergenic -2572 ENSMUSG00000020310.9 ENSMUSG00000020310 ENSMUST00000217748 Madcam1 protein_coding Interval_72716 chr17 31724290 31725441 + 0 NA Intergenic Intergenic -34440 ENSMUSG00000117656.1 ENSMUSG00000117656 ENSMUST00000237283 Gm50225 lincRNA Interval_83845 chr19 5058119 5059662 + 0 NA Intergenic Intergenic 8064 ENSMUSG00000024883.8 ENSMUSG00000024883 ENSMUST00000224032 Rin1 protein_coding Interval_159500 chr8 95109565 95110435 + 0 NA TTS (ENSMUSG00000031788.14) protein_coding-TTS (ENSMUSG00000031788.14) 3342 ENSMUSG00000031788.14 ENSMUSG00000031788 ENSMUST00000212842 Kifc3 protein_coding Interval_72996 chr17 34038124 34039819 + 0 NA promoter-TSS (ENSMUSG00000024330.17) protein_coding-promoter-TSS (ENSMUSG00000024330.17) -501 ENSMUSG00000024330.17 ENSMUSG00000024330 ENSMUST00000144927 Col11a2 protein_coding Interval_159945 chr8 105331302 105331556 + 0 NA exon (ENSMUSG00000014778.10, exon 16 of 22) protein_coding-exon (ENSMUSG00000014778.10, exon 16 of 22) 5067 ENSMUSG00000014856.12 ENSMUSG00000014856 ENSMUST00000109372 Tmem208 protein_coding Interval_135587 chr6 41055736 41056019 + 0 NA promoter-TSS (ENSMUSG00000103586.5) lincRNA-promoter-TSS (ENSMUSG00000103586.5) -6 ENSMUSG00000103586.5 ENSMUSG00000103586 ENSMUST00000192753 5830405F06Rik lincRNA Interval_155541 chr8 34187507 34187800 + 0 NA Intergenic Intergenic -20941 ENSMUSG00000098785.1 ENSMUSG00000098785 ENSMUST00000183885 Mir6395 miRNA Interval_120229 chr4 144559960 144560205 + 0 NA intron (ENSMUSG00000078506.1, intron 2 of 3) protein_coding-intron (ENSMUSG00000078506.1, intron 2 of 3) 5052 ENSMUSG00000078506.1 ENSMUSG00000078506 ENSMUST00000105748 Aadacl4fm2 protein_coding Interval_113862 chr4 59413607 59413967 + 0 NA intron (ENSMUSG00000038578.15, intron 3 of 16) protein_coding-intron (ENSMUSG00000038578.15, intron 3 of 16) -44921 ENSMUSG00000083979.1 ENSMUSG00000083979 ENSMUST00000117967 Gm12527 processed_pseudogene Interval_123290 chr5 31153714 31154838 + 0 NA promoter-TSS (ENSMUSG00000107283.3) protein_coding-promoter-TSS (ENSMUSG00000107283.3) 3877 ENSMUSG00000101678.3 ENSMUSG00000101678 ENSMUST00000101411 Gm29609 protein_coding Interval_122441 chr5 22676707 22676904 + 0 NA intron (ENSMUSG00000097207.7, intron 4 of 5) lincRNA-intron (ENSMUSG00000097207.7, intron 3 of 4) 17914 ENSMUSG00000106181.1 ENSMUSG00000106181 ENSMUST00000199146 Gm9523 processed_pseudogene Interval_129699 chr5 121848106 121849419 + 0 NA promoter-TSS (ENSMUSG00000044134.9) protein_coding-promoter-TSS (ENSMUSG00000044134.9) 82 ENSMUSG00000104719.1 ENSMUSG00000104719 ENSMUST00000197910 4933437G19Rik TEC Interval_22430 chr11 9996623 9997769 + 0 NA Intergenic Intergenic -242141 ENSMUSG00000082312.1 ENSMUSG00000082312 ENSMUST00000117538 Gm11996 processed_pseudogene Interval_163799 chr9 26248921 26249308 + 0 NA Intergenic Intergenic 119544 ENSMUSG00000111238.1 ENSMUSG00000111238 ENSMUST00000217552 Gm19113 processed_pseudogene Interval_69261 chr16 91752014 91753319 + 0 NA intron (ENSMUSG00000022957.20, intron 1 of 5) protein_coding-intron (ENSMUSG00000022957.20, intron 1 of 28) -24069 ENSMUSG00000058240.14 ENSMUSG00000058240 ENSMUST00000123751 Cryzl1 protein_coding Interval_53417 chr14 57173375 57173664 + 0 NA Intergenic Intergenic 5641 ENSMUSG00000114530.1 ENSMUSG00000114530 ENSMUST00000225618 Gm48725 processed_pseudogene Interval_122205 chr5 19675912 19676222 + 0 NA intron (ENSMUSG00000040003.18, intron 1 of 2) protein_coding-intron (ENSMUSG00000040003.18, intron 1 of 22) -160560 ENSMUSG00000088668.1 ENSMUSG00000088668 ENSMUST00000158043 Gm25335 snRNA Interval_45800 chr13 58169052 58169275 + 0 NA Intergenic Intergenic 11514 ENSMUSG00000050002.14 ENSMUSG00000050002 ENSMUST00000225236 Idnk protein_coding Interval_113449 chr4 55058286 55058711 + 0 NA intron (ENSMUSG00000060206.11, intron 9 of 12) protein_coding-intron (ENSMUSG00000060206.11, intron 7 of 10) -58065 ENSMUSG00000082704.1 ENSMUSG00000082704 ENSMUST00000120116 Gm12515 processed_pseudogene Interval_129683 chr5 121720813 121722309 + 0 NA intron (ENSMUSG00000089729.1, intron 1 of 1) protein_coding-intron (ENSMUSG00000042605.16, intron 1 of 24) 5842 ENSMUSG00000089729.1 ENSMUSG00000089729 ENSMUST00000162348 Gm16552 antisense Interval_101353 chr2 180724755 180725664 + 0 NA promoter-TSS (ENSMUSG00000023393.15) protein_coding-promoter-TSS (ENSMUSG00000023393.15) -11209 ENSMUSG00000023393.15 ENSMUSG00000023393 ENSMUST00000140955 Slc17a9 protein_coding Interval_15801 chr10 57093255 57093437 + 0 NA Intergenic Intergenic -23876 ENSMUSG00000112345.1 ENSMUSG00000112345 ENSMUST00000218944 Gm40652 lincRNA Interval_153775 chr8 8392622 8393330 + 0 NA intron (ENSMUSG00000109127.1, intron 2 of 5) lincRNA-intron (ENSMUSG00000109127.1, intron 2 of 5) 15886 ENSMUSG00000109515.1 ENSMUSG00000109515 ENSMUST00000207967 Gm31343 lincRNA Interval_79328 chr18 30575663 30576037 + 0 NA Intergenic Intergenic 33040 ENSMUSG00000117526.1 ENSMUSG00000117526 ENSMUST00000235078 Gm41780 processed_pseudogene Interval_112015 chr4 33254704 33255275 + 0 NA intron (ENSMUSG00000040128.9, intron 1 of 1) protein_coding-intron (ENSMUSG00000040128.9, intron 1 of 1) -7414 ENSMUSG00000040128.9 ENSMUSG00000040128 ENSMUST00000137589 Pnrc1 protein_coding Interval_54801 chr14 75218972 75219771 + 0 NA intron (ENSMUSG00000021998.16, intron 14 of 16) protein_coding-intron (ENSMUSG00000021998.16, intron 13 of 15) -20100 ENSMUSG00000090054.1 ENSMUSG00000090054 ENSMUST00000161819 Gm15629 antisense Interval_59684 chr15 57951632 57952376 + 0 NA intron (ENSMUSG00000022364.14, intron 12 of 13) protein_coding-intron (ENSMUSG00000022364.14, intron 13 of 20) 35991 ENSMUSG00000022364.14 ENSMUSG00000022364 ENSMUST00000161329 Tbc1d31 protein_coding Interval_86806 chr19 43985896 43986636 + 0 NA exon (ENSMUSG00000025196.4, exon 1 of 9) protein_coding-exon (ENSMUSG00000025196.4, exon 1 of 9) -17573 ENSMUSG00000025196.4 ENSMUSG00000025196 ENSMUST00000131882 Cpn1 protein_coding Interval_100936 chr2 173465672 173466499 + 0 NA Intergenic Intergenic -56501 ENSMUSG00000027518.3 ENSMUSG00000027518 ENSMUST00000029023 1700021F07Rik protein_coding Interval_139200 chr6 97131117 97131441 + 0 NA intron (ENSMUSG00000035245.12, intron 9 of 17) protein_coding-intron (ENSMUSG00000035245.12, intron 9 of 17) -16915 ENSMUSG00000107502.1 ENSMUSG00000107502 ENSMUST00000203184 Gm44065 TEC Interval_135555 chr6 40381754 40382146 + 0 NA intron (ENSMUSG00000029916.11, intron 2 of 7) protein_coding-intron (ENSMUSG00000029916.11, intron 10 of 15) 49458 ENSMUSG00000037172.14 ENSMUSG00000037172 ENSMUST00000200994 Dennd11 protein_coding Interval_168594 chr9 83978586 83979181 + 0 NA intron (ENSMUSG00000032263.14, intron 3 of 10) protein_coding-intron (ENSMUSG00000032263.14, intron 3 of 10) -11876 ENSMUSG00000101077.1 ENSMUSG00000101077 ENSMUST00000185454 Gm29164 processed_pseudogene Interval_40826 chr12 108696354 108696982 + 0 NA TTS (ENSMUSG00000113396.1) antisense-TTS (ENSMUSG00000113396.1) 1182 ENSMUSG00000113396.1 ENSMUSG00000113396 ENSMUST00000221885 Gm33467 antisense Interval_97828 chr2 144305389 144306388 + 0 NA exon (ENSMUSG00000037279.13, exon 4 of 4) protein_coding-exon (ENSMUSG00000037279.13, exon 4 of 4) 25438 ENSMUSG00000037279.13 ENSMUSG00000037279 ENSMUST00000138582 Ovol2 protein_coding Interval_137106 chr6 67445478 67445714 + 0 NA intron (ENSMUSG00000049093.9, intron 7 of 10) protein_coding-intron (ENSMUSG00000049093.9, intron 7 of 10) -27545 ENSMUSG00000107508.1 ENSMUSG00000107508 ENSMUST00000203114 Gm44083 processed_pseudogene Interval_103926 chr3 55026958 55027160 + 0 NA Intergenic Intergenic 27978 ENSMUSG00000027793.6 ENSMUSG00000027793 ENSMUST00000199352 Ccna1 protein_coding Interval_148816 chr7 88526975 88527535 + 0 NA Intergenic Intergenic 3643 ENSMUSG00000069972.6 ENSMUSG00000069972 ENSMUST00000182017 Rps13-ps2 processed_pseudogene Interval_12299 chr1 191519935 191520161 + 0 NA Intergenic Intergenic 16844 ENSMUSG00000102246.1 ENSMUSG00000102246 ENSMUST00000192556 9430037O13Rik TEC Interval_149670 chr7 100529719 100530441 + 0 NA Intergenic Intergenic 6064 ENSMUSG00000109560.1 ENSMUSG00000109560 ENSMUST00000208573 Gm8463 processed_pseudogene Interval_126850 chr5 94377519 94377896 + 0 NA intron (ENSMUSG00000073497.6, intron 1 of 2) protein_coding-intron (ENSMUSG00000073497.6, intron 1 of 2) 390 ENSMUSG00000073497.6 ENSMUSG00000073497 ENSMUST00000202253 AA792892 protein_coding Interval_76053 chr17 74602500 74603475 + 0 NA exon (ENSMUSG00000024073.16, exon 5 of 18) protein_coding-exon (ENSMUSG00000024073.16, exon 5 of 18) 14132 ENSMUSG00000097546.1 ENSMUSG00000097546 ENSMUST00000181387 Gm26749 antisense Interval_129189 chr5 118069106 118069878 + 0 NA exon (ENSMUSG00000029360.3, exon 3 of 3) antisense-exon (ENSMUSG00000029360.3, exon 3 of 3) 4132 ENSMUSG00000029360.3 ENSMUSG00000029360 ENSMUST00000031305 Gm9754 antisense Interval_4362 chr1 73085063 73085666 + 0 NA Intergenic Intergenic 69328 ENSMUSG00000101968.6 ENSMUSG00000101968 ENSMUST00000190525 1700027A15Rik antisense Interval_71633 chr17 25002945 25003398 + 0 NA TTS (ENSMUSG00000038002.9) protein_coding-TTS (ENSMUSG00000038002.9) 12617 ENSMUSG00000038002.9 ENSMUSG00000038002 ENSMUST00000233169 Cramp1l protein_coding Interval_63015 chr15 98652858 98653175 + 0 NA intron (ENSMUSG00000003360.15, intron 3 of 4) protein_coding-intron (ENSMUSG00000003360.15, intron 3 of 16) 9878 ENSMUSG00000003360.15 ENSMUSG00000003360 ENSMUST00000228973 Ddx23 protein_coding Interval_147770 chr7 73468032 73468305 + 0 NA intron (ENSMUSG00000078671.11, intron 1 of 14) protein_coding-intron (ENSMUSG00000078671.11, intron 26 of 38) -7535 ENSMUSG00000108741.1 ENSMUSG00000108741 ENSMUST00000206316 Gm44553 TEC Interval_91410 chr2 38615926 38616588 + 0 NA intron (ENSMUSG00000026750.6, intron 5 of 5) protein_coding-intron (ENSMUSG00000026750.6, intron 5 of 7) -6544 ENSMUSG00000082931.1 ENSMUSG00000082931 ENSMUST00000121784 Gm13586 processed_pseudogene Interval_110143 chr3 153682658 153682933 + 0 NA intron (ENSMUSG00000052544.9, intron 1 of 4) protein_coding-intron (ENSMUSG00000052544.9, intron 1 of 2) -26116 ENSMUSG00000089237.1 ENSMUSG00000089237 ENSMUST00000158612 Gm22206 snoRNA Interval_44944 chr13 50445480 50445765 + 0 NA intron (ENSMUSG00000101136.1, intron 1 of 1) antisense-intron (ENSMUSG00000101136.1, intron 1 of 1) -1710 ENSMUSG00000114559.1 ENSMUSG00000114559 ENSMUST00000225905 Gm47429 protein_coding Interval_45235 chr13 53376935 53377872 + 0 NA promoter-TSS (ENSMUSG00000021468.8) protein_coding-promoter-TSS (ENSMUSG00000021468.8) -38 ENSMUSG00000021468.8 ENSMUSG00000021468 ENSMUST00000221709 Sptlc1 protein_coding Interval_99023 chr2 156711015 156711767 + 0 NA intron (ENSMUSG00000061689.15, intron 7 of 12) protein_coding-intron (ENSMUSG00000061689.15, intron 5 of 10) 9518 ENSMUSG00000086638.7 ENSMUSG00000086638 ENSMUST00000130089 4930405A21Rik processed_transcript Interval_118511 chr4 132187411 132187940 + 0 NA intron (ENSMUSG00000040025.17, intron 3 of 3) protein_coding-intron (ENSMUSG00000040025.17, intron 3 of 3) 23134 ENSMUSG00000040025.17 ENSMUSG00000040025 ENSMUST00000102570 Ythdf2 protein_coding Interval_11496 chr1 182226169 182227755 + 0 NA Intergenic Intergenic 55262 ENSMUSG00000038633.5 ENSMUSG00000038633 ENSMUST00000133052 Degs1 protein_coding Interval_97617 chr2 140676541 140677445 + 0 NA intron (ENSMUSG00000068205.14, intron 3 of 3) protein_coding-intron (ENSMUSG00000068205.14, intron 3 of 17) -5543 ENSMUSG00000051379.12 ENSMUSG00000051379 ENSMUST00000056760 Flrt3 protein_coding Interval_108934 chr3 133487127 133487537 + 0 NA exon (ENSMUSG00000040943.12, exon 3 of 11) protein_coding-exon (ENSMUSG00000040943.12, exon 3 of 11) -6650 ENSMUSG00000040943.12 ENSMUSG00000040943 ENSMUST00000195913 Tet2 protein_coding Interval_29183 chr11 81193500 81194120 + 0 NA intron (ENSMUSG00000020704.13, intron 1 of 9) protein_coding-intron (ENSMUSG00000020704.13, intron 1 of 9) 121407 ENSMUSG00000085130.1 ENSMUSG00000085130 ENSMUST00000150536 Gm11417 antisense Interval_2196 chr1 36960580 36960899 + 0 NA Intergenic Intergenic -2312 ENSMUSG00000080054.3 ENSMUSG00000080054 ENSMUST00000116168 Rpl12-ps1 processed_pseudogene Interval_163479 chr9 21630798 21631314 + 0 NA intron (ENSMUSG00000032187.16, intron 1 of 33) protein_coding-intron (ENSMUSG00000032187.16, intron 1 of 33) 14792 ENSMUSG00000032187.16 ENSMUSG00000032187 ENSMUST00000172996 Smarca4 protein_coding Interval_122885 chr5 26894276 26894776 + 0 NA intron (ENSMUSG00000061576.15, intron 1 of 3) protein_coding-intron (ENSMUSG00000061576.15, intron 1 of 25) -34425 ENSMUSG00000080941.1 ENSMUSG00000080941 ENSMUST00000119293 Gm16056 processed_pseudogene Interval_43156 chr13 24753300 24753619 + 0 NA TTS (ENSMUSG00000006715.11) protein_coding-TTS (ENSMUSG00000006715.11) 8438 ENSMUSG00000006715.11 ENSMUSG00000006715 ENSMUST00000177253 Gmnn protein_coding Interval_92132 chr2 53709533 53710127 + 0 NA Intergenic Intergenic -8875 ENSMUSG00000088628.1 ENSMUSG00000088628 ENSMUST00000158003 Gm23315 snoRNA Interval_94226 chr2 85472071 85472555 + 0 NA Intergenic Intergenic -28674 ENSMUSG00000075218.3 ENSMUSG00000075218 ENSMUST00000099924 Olfr995 protein_coding Interval_53546 chr14 58825723 58825944 + 0 NA Intergenic Intergenic 53482 ENSMUSG00000098157.1 ENSMUSG00000098157 ENSMUST00000182482 Gm9022 transcribed_processed_pseudogene Interval_13241 chr10 13482329 13483736 + 0 NA Intergenic Intergenic -23005 ENSMUSG00000019810.15 ENSMUSG00000019810 ENSMUST00000166466 Fuca2 protein_coding Interval_58512 chr15 35347397 35347659 + 0 NA Intergenic Intergenic -18993 ENSMUSG00000115453.1 ENSMUSG00000115453 ENSMUST00000227345 BC048602 lincRNA Interval_8236 chr1 136653606 136654071 + 0 NA Intergenic Intergenic 28937 ENSMUSG00000041483.14 ENSMUSG00000041483 ENSMUST00000112046 Zfp281 protein_coding Interval_87002 chr19 45469554 45470173 + 0 NA intron (ENSMUSG00000025217.15, intron 4 of 13) protein_coding-intron (ENSMUSG00000025217.15, intron 3 of 14) -18668 ENSMUSG00000057605.4 ENSMUSG00000057605 ENSMUST00000077435 Gm6807 processed_pseudogene Interval_65938 chr16 30382470 30383115 + 0 NA intron (ENSMUSG00000022533.14, intron 3 of 4) protein_coding-intron (ENSMUSG00000022533.14, intron 2 of 32) -48944 ENSMUSG00000022533.14 ENSMUSG00000022533 ENSMUST00000136065 Atp13a3 protein_coding Interval_35560 chr12 24795764 24796468 + 0 NA TTS (ENSMUSG00000113621.1) bidirectional_promoter_lncRNA-TTS (ENSMUSG00000113621.1) 16943 ENSMUSG00000114084.1 ENSMUSG00000114084 ENSMUST00000223420 Gm48897 processed_pseudogene Interval_10018 chr1 165103041 165103351 + 0 NA Intergenic Intergenic -11268 ENSMUSG00000102408.1 ENSMUSG00000102408 ENSMUST00000195635 4930568G15Rik lincRNA Interval_145296 chr7 31189006 31189265 + 0 NA Intergenic Intergenic 7098 ENSMUSG00000099536.1 ENSMUSG00000099536 ENSMUST00000187492 Gm9569 processed_pseudogene Interval_4961 chr1 82975850 82976427 + 0 NA Intergenic Intergenic 15852 ENSMUSG00000114011.1 ENSMUSG00000114011 ENSMUST00000223536 Gm47955 protein_coding Interval_93785 chr2 76878689 76879037 + 0 NA exon (ENSMUSG00000051747.15, exon 93 of 347) protein_coding-exon (ENSMUSG00000051747.15, exon 93 of 347) -42049 ENSMUSG00000051747.15 ENSMUSG00000051747 ENSMUST00000147048 Ttn protein_coding Interval_128400 chr5 113121076 113121884 + 0 NA intron (ENSMUSG00000051339.10, intron 6 of 12) protein_coding-intron (ENSMUSG00000051339.10, intron 1 of 7) -2016 ENSMUSG00000104576.1 ENSMUSG00000104576 ENSMUST00000197638 F830115B05Rik TEC Interval_139790 chr6 108709352 108710891 + 0 NA Intergenic Intergenic 47075 ENSMUSG00000030103.11 ENSMUSG00000030103 ENSMUST00000204550 Bhlhe40 protein_coding Interval_144502 chr7 25515088 25516053 + 0 NA TTS (ENSMUSG00000054385.14) protein_coding-TTS (ENSMUSG00000054385.14) 21523 ENSMUSG00000054385.14 ENSMUSG00000054385 ENSMUST00000145681 Ceacam2 protein_coding Interval_24984 chr11 42489603 42489819 + 0 NA intron (ENSMUSG00000007653.12, intron 4 of 9) protein_coding-intron (ENSMUSG00000007653.12, intron 5 of 9) 68361 ENSMUSG00000007653.12 ENSMUSG00000007653 ENSMUST00000192403 Gabrb2 protein_coding Interval_108012 chr3 119805272 119805510 + 0 NA Intergenic Intergenic -21587 ENSMUSG00000028134.11 ENSMUSG00000028134 ENSMUST00000198403 Ptbp2 protein_coding Interval_99672 chr2 164103519 164104236 + 0 NA intron (ENSMUSG00000018209.15, intron 2 of 2) protein_coding-intron (ENSMUSG00000018209.15, intron 9 of 10) 22280 ENSMUSG00000018209.15 ENSMUSG00000018209 ENSMUST00000088291 Stk4 protein_coding Interval_37733 chr12 71489269 71489541 + 0 NA intron (ENSMUSG00000113630.1, intron 1 of 5) lincRNA-intron (ENSMUSG00000113441.1, intron 5 of 5) 1120 ENSMUSG00000113630.1 ENSMUSG00000113630 ENSMUST00000220948 4930404H11Rik lincRNA Interval_23192 chr11 20454904 20456666 + 0 NA Intergenic Intergenic 9373 ENSMUSG00000083878.3 ENSMUSG00000083878 ENSMUST00000119032 Gm12034 processed_pseudogene Interval_166280 chr9 57997508 57998607 + 0 NA promoter-TSS (ENSMUSG00000097604.1) lincRNA-promoter-TSS (ENSMUSG00000097604.1) 16 ENSMUSG00000097604.1 ENSMUSG00000097604 ENSMUST00000181289 Gm17322 lincRNA Interval_29310 chr11 82849745 82850372 + 0 NA intron (ENSMUSG00000020696.18, intron 1 of 7) protein_coding-intron (ENSMUSG00000020696.18, intron 1 of 7) -3966 ENSMUSG00000020696.18 ENSMUSG00000020696 ENSMUST00000126660 Rffl protein_coding Interval_19937 chr10 111381736 111382401 + 0 NA Intergenic Intergenic 44944 ENSMUSG00000112246.1 ENSMUSG00000112246 ENSMUST00000219123 Gm40761 lincRNA Interval_147641 chr7 70516469 70517127 + 0 NA Intergenic Intergenic -14424 ENSMUSG00000108899.1 ENSMUSG00000108899 ENSMUST00000209120 Gm44811 TEC Interval_149076 chr7 92908517 92908905 + 0 NA intron (ENSMUSG00000061119.7, intron 3 of 8) protein_coding-intron (ENSMUSG00000061119.7, intron 3 of 8) 6532 ENSMUSG00000109268.1 ENSMUSG00000109268 ENSMUST00000208883 9530078K11Rik TEC Interval_19428 chr10 99171702 99173181 + 0 NA intron (ENSMUSG00000019952.15, intron 1 of 2) protein_coding-intron (ENSMUSG00000019952.15, intron 10 of 11) 12169 ENSMUSG00000089994.1 ENSMUSG00000089994 ENSMUST00000160182 Gm16239 antisense Interval_135277 chr6 37985163 37985395 + 0 NA intron (ENSMUSG00000029830.15, intron 10 of 10) protein_coding-intron (ENSMUSG00000029830.15, intron 15 of 15) 33332 ENSMUSG00000029830.15 ENSMUSG00000029830 ENSMUST00000040486 Svopl protein_coding Interval_16736 chr10 67766097 67767128 + 0 NA Intergenic Intergenic -19123 ENSMUSG00000112537.1 ENSMUSG00000112537 ENSMUST00000219006 4930543I11Rik TEC Interval_9799 chr1 162489272 162490199 + 0 NA Intergenic Intergenic 12055 ENSMUSG00000066752.4 ENSMUSG00000066752 ENSMUST00000159707 Gm10176 TEC Interval_41320 chr12 112699329 112701359 + 0 NA Intergenic Intergenic -6756 ENSMUSG00000103898.1 ENSMUSG00000103898 ENSMUST00000195528 Gm30238 TEC Interval_167375 chr9 67900498 67900887 + 0 NA intron (ENSMUSG00000035284.10, intron 24 of 84) protein_coding-intron (ENSMUSG00000035284.10, intron 24 of 84) 60280 ENSMUSG00000035284.10 ENSMUSG00000035284 ENSMUST00000215524 Vps13c protein_coding Interval_14720 chr10 39369334 39370624 + 0 NA exon (ENSMUSG00000019843.14, exon 1 of 14) protein_coding-exon (ENSMUSG00000019843.14, exon 1 of 14) -46562 ENSMUSG00000111183.1 ENSMUSG00000111183 ENSMUST00000215530 Gm48486 lincRNA Interval_100667 chr2 170965234 170965486 + 0 NA Intergenic Intergenic -10536 ENSMUSG00000080955.1 ENSMUSG00000080955 ENSMUST00000117955 Gm14263 processed_pseudogene Interval_153602 chr8 3654905 3655996 + 0 NA promoter-TSS (ENSMUSG00000012705.16) protein_coding-promoter-TSS (ENSMUSG00000012705.16) -320 ENSMUSG00000012705.16 ENSMUSG00000012705 ENSMUST00000012849 Retn protein_coding Interval_100266 chr2 168057064 168057490 + 0 NA Intergenic Intergenic 7620 ENSMUSG00000092849.1 ENSMUSG00000092849 ENSMUST00000175108 Gm24327 miRNA Interval_170380 chr9 107568295 107569622 + 0 NA promoter-TSS (ENSMUSG00000010047.12) protein_coding-promoter-TSS (ENSMUSG00000010047.12) 1013 ENSMUSG00000010047.12 ENSMUSG00000010047 ENSMUST00000195667 Hyal2 protein_coding Interval_79309 chr18 30347000 30347614 + 0 NA intron (ENSMUSG00000033628.15, intron 24 of 24) protein_coding-intron (ENSMUSG00000033628.15, intron 24 of 24) 72753 ENSMUSG00000117345.1 ENSMUSG00000117345 ENSMUST00000234753 Gm7926 processed_pseudogene Interval_29905 chr11 87662032 87663111 + 0 NA promoter-TSS (ENSMUSG00000034177.15) protein_coding-promoter-TSS (ENSMUSG00000034177.15) -516 ENSMUSG00000034177.15 ENSMUSG00000034177 ENSMUST00000150866 Rnf43 protein_coding Interval_138691 chr6 91202499 91202876 + 0 NA Intergenic Intergenic 7357 ENSMUSG00000107397.1 ENSMUSG00000107397 ENSMUST00000203115 4930402H05Rik TEC Interval_62882 chr15 97687562 97687849 + 0 NA intron (ENSMUSG00000022466.6, intron 9 of 16) protein_coding-intron (ENSMUSG00000022466.6, intron 9 of 16) -7352 ENSMUSG00000022466.6 ENSMUSG00000022466 ENSMUST00000229008 Rpap3 protein_coding Interval_82798 chr18 77102877 77103362 + 0 NA intron (ENSMUSG00000025423.16, intron 2 of 14) protein_coding-intron (ENSMUSG00000025423.16, intron 2 of 12) 37874 ENSMUSG00000025423.16 ENSMUSG00000025423 ENSMUST00000168882 Pias2 protein_coding Interval_174126 chrX 135866386 135867207 + 0 NA intron (ENSMUSG00000072964.14, intron 7 of 10) protein_coding-intron (ENSMUSG00000072964.14, intron 7 of 10) 27762 ENSMUSG00000072966.11 ENSMUSG00000072966 ENSMUST00000138251 Gprasp2 protein_coding Interval_128958 chr5 116317008 116317273 + 0 NA intron (ENSMUSG00000086715.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000086715.1, intron 1 of 2) 4780 ENSMUSG00000086715.1 ENSMUSG00000086715 ENSMUST00000128473 B230112J18Rik lincRNA Interval_23520 chr11 23095041 23097774 + 0 NA Intergenic Intergenic 28409 ENSMUSG00000085665.1 ENSMUSG00000085665 ENSMUST00000128996 Gm12059 processed_transcript Interval_58878 chr15 39646105 39647606 + 0 NA intron (ENSMUSG00000037386.16, intron 19 of 23) protein_coding-intron (ENSMUSG00000037386.16, intron 22 of 26) -99079 ENSMUSG00000022303.9 ENSMUSG00000022303 ENSMUST00000227792 Dcstamp protein_coding Interval_31653 chr11 102026260 102027572 + 0 NA promoter-TSS (ENSMUSG00000052373.14) protein_coding-promoter-TSS (ENSMUSG00000052373.14) -1059 ENSMUSG00000052373.14 ENSMUSG00000052373 ENSMUST00000141403 Mpp3 protein_coding Interval_166188 chr9 57334253 57334466 + 0 NA exon (ENSMUSG00000066626.5, exon 1 of 1) processed_pseudogene-exon (ENSMUSG00000066626.5, exon 1 of 1) 231 ENSMUSG00000066626.5 ENSMUSG00000066626 ENSMUST00000085711 Gm5121 processed_pseudogene Interval_28611 chr11 77140995 77141196 + 0 NA intron (ENSMUSG00000050944.14, intron 1 of 11) protein_coding-intron (ENSMUSG00000050944.14, intron 3 of 17) -8533 ENSMUSG00000102038.1 ENSMUSG00000102038 ENSMUST00000119288 Gm12345 processed_pseudogene Interval_71196 chr17 21066840 21067840 + 0 NA Intergenic Intergenic -6564 ENSMUSG00000101511.1 ENSMUSG00000101511 ENSMUST00000189217 Gm5681 unprocessed_pseudogene Interval_80654 chr18 45501982 45502353 + 0 NA exon (ENSMUSG00000118074.1, exon 4 of 4) transcribed_processed_pseudogene-exon (ENSMUSG00000118074.1, exon 4 of 4) 57963 ENSMUSG00000118074.1 ENSMUSG00000118074 ENSMUST00000235309 Gm31907 transcribed_processed_pseudogene Interval_126250 chr5 84302917 84303328 + 0 NA intron (ENSMUSG00000029245.16, intron 3 of 3) protein_coding-intron (ENSMUSG00000029245.16, intron 3 of 15) 58944 ENSMUSG00000029245.16 ENSMUSG00000029245 ENSMUST00000200076 Epha5 protein_coding Interval_115383 chr4 98414429 98415930 + 0 NA intron (ENSMUSG00000061859.17, intron 6 of 44) protein_coding-intron (ENSMUSG00000061859.17, intron 6 of 43) 19388 ENSMUSG00000061859.17 ENSMUSG00000061859 ENSMUST00000030290 Patj protein_coding Interval_172625 chrX 38505018 38505422 + 0 NA Intergenic Intergenic 28759 ENSMUSG00000087390.1 ENSMUSG00000087390 ENSMUST00000130251 Gm7598 lincRNA Interval_101442 chr2 181453269 181453902 + 0 NA intron (ENSMUSG00000027583.13, intron 1 of 2) protein_coding-intron (ENSMUSG00000027583.13, intron 1 of 4) -27548 ENSMUSG00000089612.1 ENSMUSG00000089612 ENSMUST00000158987 Gm22708 snRNA Interval_36812 chr12 54289019 54290166 + 0 NA Intergenic Intergenic 27423 ENSMUSG00000112705.1 ENSMUSG00000112705 ENSMUST00000217997 Gm47552 lincRNA Interval_12453 chr1 193579759 193580671 + 0 NA Intergenic Intergenic -70041 ENSMUSG00000097850.2 ENSMUSG00000097850 ENSMUST00000180420 Mir205hg lincRNA Interval_158290 chr8 80869667 80871464 + 0 NA intron (ENSMUSG00000031714.9, intron 1 of 10) protein_coding-intron (ENSMUSG00000031714.9, intron 1 of 9) -9375 ENSMUSG00000109587.1 ENSMUSG00000109587 ENSMUST00000211421 Gm31105 antisense Interval_140948 chr6 122934538 122937964 + 0 NA Intergenic Intergenic 14403 ENSMUSG00000049037.8 ENSMUSG00000049037 ENSMUST00000060484 Clec4a1 protein_coding Interval_31815 chr11 103101367 103103344 + 0 NA promoter-TSS (ENSMUSG00000020937.14) protein_coding-promoter-TSS (ENSMUSG00000020937.14) 629 ENSMUSG00000056938.16 ENSMUSG00000056938 ENSMUST00000124965 Acbd4 protein_coding Interval_39858 chr12 99148447 99150768 + 0 NA Intergenic Intergenic 13201 ENSMUSG00000113210.1 ENSMUSG00000113210 ENSMUST00000223511 4930474N09Rik lincRNA Interval_94647 chr2 92987694 92988850 + 0 NA intron (ENSMUSG00000075028.12, intron 5 of 5) protein_coding-intron (ENSMUSG00000075028.12, intron 5 of 5) -42172 ENSMUSG00000075027.10 ENSMUSG00000075027 ENSMUST00000145926 4631405J19Rik antisense Interval_164706 chr9 40709664 40710393 + 0 NA intron (ENSMUSG00000032024.10, intron 1 of 1) protein_coding-intron (ENSMUSG00000032024.10, intron 1 of 6) -5130 ENSMUSG00000111794.1 ENSMUSG00000111794 ENSMUST00000215601 Gm48294 sense_intronic Interval_159525 chr8 95233740 95234697 + 0 NA Intergenic Intergenic 66448 ENSMUSG00000031789.17 ENSMUSG00000031789 ENSMUST00000212237 Cngb1 protein_coding Interval_170241 chr9 106409249 106409505 + 0 NA Intergenic Intergenic -20185 ENSMUSG00000048758.14 ENSMUSG00000048758 ENSMUST00000214067 Rpl29 protein_coding Interval_36791 chr12 54060576 54061200 + 0 NA intron (ENSMUSG00000021010.9, intron 8 of 10) protein_coding-intron (ENSMUSG00000021010.9, intron 9 of 11) 18504 ENSMUSG00000099407.1 ENSMUSG00000099407 ENSMUST00000185390 1700060O08Rik antisense Interval_112133 chr4 34882380 34883436 + 0 NA promoter-TSS (ENSMUSG00000039967.14) protein_coding-promoter-TSS (ENSMUSG00000039967.14) 22 ENSMUSG00000039967.14 ENSMUSG00000039967 ENSMUST00000047950 Zfp292 protein_coding Interval_49765 chr13 114795771 114796351 + 0 NA Intergenic Intergenic -22233 ENSMUSG00000015536.14 ENSMUSG00000015536 ENSMUST00000164871 Mocs2 protein_coding Interval_157682 chr8 72270753 72273438 + 0 NA Intergenic Intergenic 12059 ENSMUSG00000110443.1 ENSMUSG00000110443 ENSMUST00000212069 Gm39197 processed_pseudogene Interval_82255 chr18 69676858 69678146 + 0 NA intron (ENSMUSG00000053477.17, intron 11 of 14) protein_coding-intron (ENSMUSG00000053477.17, intron 17 of 20) 100543 ENSMUSG00000064706.1 ENSMUSG00000064706 ENSMUST00000082772 Gm22508 misc_RNA Interval_8421 chr1 139122255 139123270 + 0 NA intron (ENSMUSG00000056268.15, intron 1 of 8) protein_coding-intron (ENSMUSG00000056268.15, intron 13 of 20) 11903 ENSMUSG00000085481.1 ENSMUSG00000085481 ENSMUST00000129972 Gm16304 processed_pseudogene Interval_76063 chr17 74652709 74652953 + 0 NA intron (ENSMUSG00000024073.16, intron 56 of 72) protein_coding-intron (ENSMUSG00000024073.16, intron 56 of 72) 17109 ENSMUSG00000024073.16 ENSMUSG00000024073 ENSMUST00000182157 Birc6 protein_coding Interval_67043 chr16 42064853 42065574 + 0 NA intron (ENSMUSG00000061080.11, intron 5 of 8) protein_coding-intron (ENSMUSG00000061080.11, intron 3 of 5) 119704 ENSMUSG00000116841.1 ENSMUSG00000116841 ENSMUST00000232237 Gm49737 processed_pseudogene Interval_159715 chr8 98845253 98845469 + 0 NA Intergenic Intergenic 33536 ENSMUSG00000110011.1 ENSMUSG00000110011 ENSMUST00000210098 Gm29817 processed_pseudogene Interval_131957 chr5 141084069 141085377 + 0 NA Intergenic Intergenic 4292 ENSMUSG00000093344.1 ENSMUSG00000093344 ENSMUST00000175603 Gm26113 miRNA Interval_79233 chr18 26545950 26547223 + 0 NA Intergenic Intergenic 51151 ENSMUSG00000088098.1 ENSMUSG00000088098 ENSMUST00000157473 Gm23674 snoRNA Interval_3619 chr1 60042442 60043515 + 0 NA exon (ENSMUSG00000026018.12, exon 1 of 11) protein_coding-exon (ENSMUSG00000026018.12, exon 1 of 11) 144 ENSMUSG00000026018.12 ENSMUSG00000026018 ENSMUST00000186970 Ica1l protein_coding Interval_104244 chr3 61816333 61816640 + 0 NA Intergenic Intergenic 253308 ENSMUSG00000104489.1 ENSMUSG00000104489 ENSMUST00000193786 Gm9700 processed_pseudogene Interval_165026 chr9 44007602 44008339 + 0 NA Intergenic Intergenic -9377 ENSMUSG00000110815.1 ENSMUSG00000110815 ENSMUST00000214791 Gm47345 TEC Interval_28012 chr11 72206326 72207899 + 0 NA promoter-TSS (ENSMUSG00000020803.3) protein_coding-promoter-TSS (ENSMUSG00000020803.3) -86 ENSMUSG00000107877.2 ENSMUSG00000107877 ENSMUST00000204457 Gm43951 protein_coding Interval_160939 chr8 115632236 115632411 + 0 NA Intergenic Intergenic -41050 ENSMUSG00000065090.1 ENSMUSG00000065090 ENSMUST00000083156 Gm23677 snRNA Interval_29431 chr11 83973899 83975094 + 0 NA intron (ENSMUSG00000034940.15, intron 2 of 20) protein_coding-intron (ENSMUSG00000034940.15, intron 2 of 21) 28241 ENSMUSG00000020677.7 ENSMUSG00000020677 ENSMUST00000130982 Ddx52 protein_coding Interval_146838 chr7 52911178 52911768 + 0 NA Intergenic Intergenic -15597 ENSMUSG00000070203.1 ENSMUSG00000070203 ENSMUST00000093693 Gm22444 snRNA Interval_154619 chr8 22091308 22092014 + 0 NA intron (ENSMUSG00000037738.11, intron 11 of 15) protein_coding-intron (ENSMUSG00000037738.11, intron 13 of 19) 16232 ENSMUSG00000037738.11 ENSMUSG00000037738 ENSMUST00000213644 Nek5 protein_coding Interval_174460 chrX 152740264 152741351 + 0 NA intron (ENSMUSG00000045180.13, intron 1 of 9) protein_coding-intron (ENSMUSG00000045180.13, intron 1 of 9) -41114 ENSMUSG00000025333.10 ENSMUSG00000025333 ENSMUST00000139310 Gpr143 protein_coding Interval_114549 chr4 82435606 82437303 + 0 NA intron (ENSMUSG00000008575.17, intron 2 of 4) protein_coding-intron (ENSMUSG00000008575.17, intron 2 of 11) -2956 ENSMUSG00000084595.1 ENSMUSG00000084595 ENSMUST00000122646 n-R5s188 rRNA Interval_82776 chr18 77021551 77022063 + 0 NA intron (ENSMUSG00000025420.13, intron 1 of 5) protein_coding-intron (ENSMUSG00000025420.13, intron 1 of 13) 25480 ENSMUSG00000025420.13 ENSMUSG00000025420 ENSMUST00000123650 Katnal2 protein_coding Interval_64637 chr16 13803679 13805253 + 0 NA intron (ENSMUSG00000022682.8, intron 12 of 17) protein_coding-intron (ENSMUSG00000022682.8, intron 12 of 17) -14379 ENSMUSG00000022681.15 ENSMUSG00000022681 ENSMUST00000139161 Ntan1 protein_coding Interval_152873 chr7 139388287 139389617 + 0 NA promoter-TSS (ENSMUSG00000025477.14) protein_coding-promoter-TSS (ENSMUSG00000025477.14) -92087 ENSMUSG00000110115.1 ENSMUSG00000110115 ENSMUST00000209810 Gm32486 lincRNA Interval_39469 chr12 88069985 88070184 + 0 NA Intergenic Intergenic 3111 ENSMUSG00000113783.1 ENSMUSG00000113783 ENSMUST00000222311 Gm18617 processed_pseudogene Interval_35285 chr12 19827018 19827249 + 0 NA intron (ENSMUSG00000113332.1, intron 2 of 2) unprocessed_pseudogene-intron (ENSMUSG00000113332.1, intron 2 of 2) 3239 ENSMUSG00000113332.1 ENSMUSG00000113332 ENSMUST00000223533 Gm9259 unprocessed_pseudogene Interval_12558 chr1 195275863 195276242 + 0 NA Intergenic Intergenic -16204 ENSMUSG00000104297.1 ENSMUSG00000104297 ENSMUST00000192733 Gm38046 TEC Interval_116524 chr4 115029006 115029200 + 0 NA intron (ENSMUSG00000028718.16, intron 13 of 17) protein_coding-intron (ENSMUSG00000028718.16, intron 12 of 16) 22342 ENSMUSG00000028718.16 ENSMUSG00000028718 ENSMUST00000144316 Stil protein_coding Interval_11742 chr1 185091885 185092809 + 0 NA exon (ENSMUSG00000104461.1, exon 2 of 3) lincRNA-exon (ENSMUSG00000104461.1, exon 2 of 3) 356 ENSMUSG00000104461.1 ENSMUSG00000104461 ENSMUST00000195649 Gm37662 lincRNA Interval_157 JH584304.1 15831 17998 + 0 NA NA NA NA NA Interval_131890 chr5 140619282 140620376 + 0 NA TTS (ENSMUSG00000036565.7) protein_coding-TTS (ENSMUSG00000036565.7) 8320 ENSMUSG00000029570.5 ENSMUSG00000029570 ENSMUST00000199848 Lfng protein_coding Interval_142722 chr6 145158148 145159027 + 0 NA TTS (ENSMUSG00000030263.13) protein_coding-TTS (ENSMUSG00000030263.13) 13113 ENSMUSG00000030263.13 ENSMUSG00000030263 ENSMUST00000135191 Lrmp protein_coding Interval_99082 chr2 157053789 157054899 + 0 NA intron (ENSMUSG00000055485.6, intron 2 of 14) protein_coding-intron (ENSMUSG00000055485.6, intron 2 of 14) -26872 ENSMUSG00000055485.6 ENSMUSG00000055485 ENSMUST00000133571 Soga1 protein_coding Interval_37940 chr12 73173205 73173978 + 0 NA intron (ENSMUSG00000021103.12, intron 3 of 6) protein_coding-intron (ENSMUSG00000021103.12, intron 3 of 7) -27686 ENSMUSG00000077785.1 ENSMUSG00000077785 ENSMUST00000104597 Gm23910 snoRNA Interval_102555 chr3 27734463 27734820 + 0 NA Intergenic Intergenic -24243 ENSMUSG00000039286.12 ENSMUSG00000039286 ENSMUST00000193779 Fndc3b protein_coding Interval_5426 chr1 88700544 88702768 + 0 NA exon (ENSMUSG00000049866.12, exon 1 of 3) protein_coding-exon (ENSMUSG00000049866.12, exon 1 of 3) 220 ENSMUSG00000049866.12 ENSMUSG00000049866 ENSMUST00000159814 Arl4c protein_coding Interval_27507 chr11 68298490 68299671 + 0 NA intron (ENSMUSG00000020902.12, intron 3 of 7) protein_coding-intron (ENSMUSG00000020902.12, intron 2 of 6) -28201 ENSMUSG00000084993.1 ENSMUSG00000084993 ENSMUST00000151817 Gm12305 sense_intronic Interval_135665 chr6 42760927 42761728 + 0 NA promoter-TSS (ENSMUSG00000095236.2) protein_coding-promoter-TSS (ENSMUSG00000095236.2) 4923 ENSMUSG00000095236.2 ENSMUSG00000095236 ENSMUST00000074499 Olfr38 protein_coding Interval_58917 chr15 40007570 40008692 + 0 NA Intergenic Intergenic 6647 ENSMUSG00000115739.1 ENSMUSG00000115739 ENSMUST00000228464 Gm49254 TEC Interval_12580 chr10 3534285 3534934 + 0 NA Intergenic Intergenic -5679 ENSMUSG00000019762.4 ENSMUSG00000019762 ENSMUST00000141745 Iyd protein_coding Interval_11184 chr1 179942075 179942352 + 0 NA Intergenic Intergenic -16802 ENSMUSG00000104418.1 ENSMUSG00000104418 ENSMUST00000193272 Gm37070 processed_pseudogene Interval_49903 chr13 118047415 118047599 + 0 NA exon (ENSMUSG00000114713.1, exon 1 of 1) processed_pseudogene-exon (ENSMUSG00000114713.1, exon 1 of 1) 187 ENSMUSG00000114713.1 ENSMUSG00000114713 ENSMUST00000225643 Gm9633 processed_pseudogene Interval_145194 chr7 30572745 30573338 + 0 NA TTS (ENSMUSG00000006307.16) protein_coding-TTS (ENSMUSG00000006307.16) 4123 ENSMUSG00000006307.16 ENSMUSG00000006307 ENSMUST00000125372 Kmt2b protein_coding Interval_44963 chr13 50981881 50982146 + 0 NA Intergenic Intergenic -32073 ENSMUSG00000084609.2 ENSMUSG00000084609 ENSMUST00000122660 Gm22199 misc_RNA Interval_17945 chr10 81007148 81008022 + 0 NA intron (ENSMUSG00000048240.14, intron 1 of 4) protein_coding-intron (ENSMUSG00000048240.14, intron 1 of 3) 7328 ENSMUSG00000048240.14 ENSMUSG00000048240 ENSMUST00000126317 Gng7 protein_coding Interval_164535 chr9 37932313 37932984 + 0 NA Intergenic Intergenic -8767 ENSMUSG00000110675.1 ENSMUSG00000110675 ENSMUST00000212455 Olfr879-ps1 unprocessed_pseudogene Interval_26114 chr11 54410575 54411188 + 0 NA intron (ENSMUSG00000020332.7, intron 10 of 12) protein_coding-intron (ENSMUSG00000020332.7, intron 11 of 13) 6741 ENSMUSG00000084212.1 ENSMUSG00000084212 ENSMUST00000117995 Gm12225 processed_pseudogene Interval_27498 chr11 68250170 68250521 + 0 NA intron (ENSMUSG00000020902.12, intron 6 of 7) protein_coding-intron (ENSMUSG00000020902.12, intron 5 of 6) 20534 ENSMUSG00000084993.1 ENSMUSG00000084993 ENSMUST00000151817 Gm12305 sense_intronic Interval_158732 chr8 85601894 85602106 + 0 NA exon (ENSMUSG00000110341.1, exon 1 of 1) TEC-exon (ENSMUSG00000110341.1, exon 1 of 1) 2168 ENSMUSG00000110341.1 ENSMUSG00000110341 ENSMUST00000210575 Gm45424 TEC Interval_129167 chr5 117949290 117949877 + 0 NA intron (ENSMUSG00000029361.18, intron 25 of 27) protein_coding-intron (ENSMUSG00000029361.18, intron 26 of 28) -10065 ENSMUSG00000098072.1 ENSMUSG00000098072 ENSMUST00000182216 Gm26995 antisense Interval_172213 chrX 9631583 9632325 + 0 NA Intergenic Intergenic 31049 ENSMUSG00000031176.8 ENSMUSG00000031176 ENSMUST00000140019 Dynlt3 protein_coding Interval_131485 chr5 137509544 137511424 + 0 NA exon (ENSMUSG00000106237.1, exon 1 of 2) lincRNA-exon (ENSMUSG00000106237.1, exon 1 of 2) 231 ENSMUSG00000106237.1 ENSMUSG00000106237 ENSMUST00000197762 Gm8066 lincRNA Interval_115353 chr4 97868180 97869444 + 0 NA intron (ENSMUSG00000028565.18, intron 2 of 6) protein_coding-intron (ENSMUSG00000028565.18, intron 2 of 9) 96078 ENSMUSG00000028565.18 ENSMUSG00000028565 ENSMUST00000133011 Nfia protein_coding Interval_173488 chrX 95373170 95373512 + 0 NA Intergenic Intergenic 9139 ENSMUSG00000080283.2 ENSMUSG00000080283 ENSMUST00000116606 Gm14806 processed_pseudogene Interval_61770 chr15 83997701 83998401 + 0 NA intron (ENSMUSG00000022441.17, intron 6 of 31) protein_coding-intron (ENSMUSG00000022441.17, intron 6 of 31) -32288 ENSMUSG00000081925.1 ENSMUSG00000081925 ENSMUST00000117961 Rpl31-ps22 processed_pseudogene Interval_127006 chr5 99442584 99443210 + 0 NA intron (ENSMUSG00000089809.9, intron 3 of 16) protein_coding-intron (ENSMUSG00000089809.9, intron 2 of 3) -65492 ENSMUSG00000104753.1 ENSMUSG00000104753 ENSMUST00000196037 Gm35172 lincRNA Interval_131609 chr5 138761613 138762669 + 0 NA intron (ENSMUSG00000025854.15, intron 3 of 10) protein_coding-intron (ENSMUSG00000025854.15, intron 2 of 9) 7054 ENSMUSG00000025854.15 ENSMUSG00000025854 ENSMUST00000161641 Fam20c protein_coding Interval_127370 chr5 103480990 103481300 + 0 NA intron (ENSMUSG00000034573.14, intron 3 of 17) protein_coding-intron (ENSMUSG00000034573.14, intron 3 of 47) -48421 ENSMUSG00000034573.14 ENSMUSG00000034573 ENSMUST00000200581 Ptpn13 protein_coding Interval_45524 chr13 55657454 55657825 + 0 NA intron (ENSMUSG00000021500.17, intron 11 of 15) protein_coding-intron (ENSMUSG00000021500.17, intron 11 of 21) -12125 ENSMUSG00000021500.17 ENSMUSG00000021500 ENSMUST00000231097 Ddx46 protein_coding Interval_32479 chr11 107759549 107759944 + 0 NA intron (ENSMUSG00000020723.3, intron 1 of 3) protein_coding-intron (ENSMUSG00000020723.3, intron 1 of 3) -17667 ENSMUSG00000020723.3 ENSMUSG00000020723 ENSMUST00000134076 Cacng4 protein_coding Interval_123402 chr5 32230393 32230832 + 0 NA Intergenic Intergenic -2096 ENSMUSG00000029134.14 ENSMUSG00000029134 ENSMUST00000202687 Plb1 protein_coding Interval_134739 chr6 31112617 31112961 + 0 NA intron (ENSMUSG00000044471.12, intron 2 of 5) lincRNA-intron (ENSMUSG00000044471.12, intron 3 of 3) -1869 ENSMUSG00000104030.1 ENSMUSG00000104030 ENSMUST00000195672 5330406M23Rik TEC Interval_108485 chr3 127566657 127566843 + 0 NA intron (ENSMUSG00000051278.12, intron 6 of 24) protein_coding-intron (ENSMUSG00000051278.12, intron 6 of 25) -9189 ENSMUSG00000105104.1 ENSMUSG00000105104 ENSMUST00000196949 Gm43729 antisense Interval_119262 chr4 136534288 136534481 + 0 NA intron (ENSMUSG00000001089.14, intron 2 of 3) protein_coding-intron (ENSMUSG00000001089.14, intron 1 of 3) 18158 ENSMUSG00000036940.15 ENSMUSG00000036940 ENSMUST00000170979 Kdm1a protein_coding Interval_89807 chr2 25574366 25575301 + 0 NA promoter-TSS (ENSMUSG00000026941.16) protein_coding-promoter-TSS (ENSMUSG00000026941.16) 45 ENSMUSG00000036504.6 ENSMUSG00000036504 ENSMUST00000147096 Phpt1 protein_coding Interval_18401 chr10 85543232 85544224 + 0 NA intron (ENSMUSG00000020042.15, intron 1 of 16) protein_coding-intron (ENSMUSG00000020042.15, intron 1 of 9) -101475 ENSMUSG00000020042.15 ENSMUSG00000020042 ENSMUST00000145433 Btbd11 protein_coding Interval_147250 chr7 65073416 65074936 + 0 NA intron (ENSMUSG00000030518.17, intron 1 of 3) protein_coding-intron (ENSMUSG00000030518.17, intron 1 of 9) -96466 ENSMUSG00000108745.1 ENSMUSG00000108745 ENSMUST00000205552 Gm17908 processed_pseudogene Interval_149648 chr7 100381103 100382221 + 0 NA promoter-TSS (ENSMUSG00000109046.1) processed_pseudogene-promoter-TSS (ENSMUSG00000109046.1) 68 ENSMUSG00000109046.1 ENSMUSG00000109046 ENSMUST00000208092 Gm44571 processed_pseudogene Interval_155038 chr8 25862844 25863985 + 0 NA intron (ENSMUSG00000031576.16, intron 1 of 4) protein_coding-intron (ENSMUSG00000031576.16, intron 6 of 26) 978 ENSMUSG00000031576.16 ENSMUSG00000031576 ENSMUST00000126226 Kcnu1 protein_coding Interval_59383 chr15 52001217 52003438 + 0 NA Intergenic Intergenic -10817 ENSMUSG00000022314.10 ENSMUSG00000022314 ENSMUST00000226529 Rad21 protein_coding Interval_66973 chr16 38947534 38948137 + 0 NA intron (ENSMUSG00000022790.14, intron 1 of 6) protein_coding-intron (ENSMUSG00000022790.14, intron 1 of 6) 20626 ENSMUSG00000089607.1 ENSMUSG00000089607 ENSMUST00000158982 Gm22500 snRNA Interval_67164 chr16 44084013 44084362 + 0 NA Intergenic Intergenic -22642 ENSMUSG00000036292.14 ENSMUSG00000036292 ENSMUST00000214764 Gramd1c protein_coding Interval_35179 chr12 17828557 17828812 + 0 NA Intergenic Intergenic -53513 ENSMUSG00000113294.1 ENSMUSG00000113294 ENSMUST00000223226 Gm49326 unprocessed_pseudogene Interval_81661 chr18 62972848 62973315 + 0 NA Intergenic Intergenic -4766 ENSMUSG00000024581.13 ENSMUSG00000024581 ENSMUST00000236914 Napg protein_coding Interval_72555 chr17 30648958 30649186 + 0 NA intron (ENSMUSG00000033826.10, intron 6 of 10) protein_coding-intron (ENSMUSG00000033826.10, intron 6 of 92) -21568 ENSMUSG00000033826.10 ENSMUSG00000033826 ENSMUST00000235567 Dnah8 protein_coding Interval_7989 chr1 135079173 135079374 + 0 NA intron (ENSMUSG00000042793.13, intron 1 of 17) protein_coding-intron (ENSMUSG00000042793.13, intron 1 of 17) -29688 ENSMUSG00000097988.1 ENSMUSG00000097988 ENSMUST00000182275 Gm10535 antisense Interval_136221 chr6 52146920 52147216 + 0 NA Intergenic Intergenic 11249 ENSMUSG00000029844.9 ENSMUSG00000029844 ENSMUST00000120363 Hoxa1 protein_coding Interval_45648 chr13 56535094 56536027 + 0 NA intron (ENSMUSG00000035509.17, intron 6 of 6) protein_coding-intron (ENSMUSG00000035509.17, intron 6 of 6) 12849 ENSMUSG00000021539.9 ENSMUSG00000021539 ENSMUST00000225183 Lect2 protein_coding Interval_142334 chr6 140682867 140683053 + 0 NA Intergenic Intergenic 46222 ENSMUSG00000030232.18 ENSMUSG00000030232 ENSMUST00000160772 Aebp2 protein_coding Interval_167940 chr9 74803032 74803458 + 0 NA Intergenic Intergenic 21175 ENSMUSG00000088635.1 ENSMUSG00000088635 ENSMUST00000158010 Gm22315 snoRNA Interval_87902 chr19 57007785 57009286 + 0 NA promoter-TSS (ENSMUSG00000025083.18) protein_coding-promoter-TSS (ENSMUSG00000025083.18) -71297 ENSMUSG00000025083.18 ENSMUSG00000025083 ENSMUST00000132851 Afap1l2 protein_coding Interval_2645 chr1 42887934 42889639 + 0 NA intron (ENSMUSG00000060679.14, intron 1 of 6) protein_coding-intron (ENSMUSG00000060679.14, intron 5 of 10) -14271 ENSMUSG00000060679.14 ENSMUSG00000060679 ENSMUST00000202358 Mrps9 protein_coding Interval_106301 chr3 95250716 95250998 + 0 NA intron (ENSMUSG00000028115.16, intron 1 of 10) protein_coding-intron (ENSMUSG00000028115.16, intron 1 of 7) -2278 ENSMUSG00000028115.16 ENSMUSG00000028115 ENSMUST00000176070 Bnipl protein_coding Interval_105128 chr3 82061529 82062075 + 0 NA intron (ENSMUSG00000028005.13, intron 2 of 13) protein_coding-intron (ENSMUSG00000028005.13, intron 2 of 13) 12887 ENSMUSG00000028005.13 ENSMUSG00000028005 ENSMUST00000193085 Gucy1b1 protein_coding Interval_88622 chr2 7034795 7035373 + 0 NA intron (ENSMUSG00000002107.18, intron 2 of 11) protein_coding-intron (ENSMUSG00000002107.18, intron 2 of 15) 41330 ENSMUSG00000065824.1 ENSMUSG00000065824 ENSMUST00000083890 Gm26315 misc_RNA Interval_138751 chr6 91634850 91635074 + 0 NA Intergenic Intergenic 35730 ENSMUSG00000108308.1 ENSMUSG00000108308 ENSMUST00000205533 Gm45218 lincRNA Interval_106251 chr3 94917389 94919092 + 0 NA Intergenic Intergenic 2183 ENSMUSG00000087720.1 ENSMUSG00000087720 ENSMUST00000157095 Gm26279 snRNA Interval_35729 chr12 28694124 28694403 + 0 NA intron (ENSMUSG00000020628.16, intron 9 of 11) protein_coding-intron (ENSMUSG00000020628.16, intron 9 of 11) 14938 ENSMUSG00000098579.1 ENSMUSG00000098579 ENSMUST00000184974 Mir6937 miRNA Interval_55013 chr14 76907922 76908481 + 0 NA Intergenic Intergenic 46630 ENSMUSG00000115596.1 ENSMUSG00000115596 ENSMUST00000227341 Gm48969 lincRNA Interval_24166 chr11 30860738 30860973 + 0 NA intron (ENSMUSG00000040850.17, intron 41 of 46) protein_coding-intron (ENSMUSG00000040850.17, intron 41 of 46) -4614 ENSMUSG00000040850.17 ENSMUSG00000040850 ENSMUST00000155719 Psme4 protein_coding Interval_164370 chr9 36381962 36382929 + 0 NA TTS (ENSMUSG00000110812.1) unprocessed_pseudogene-TTS (ENSMUSG00000110812.1) 760 ENSMUSG00000110812.1 ENSMUSG00000110812 ENSMUST00000215264 Gm48407 unprocessed_pseudogene Interval_91279 chr2 37359311 37361327 + 0 NA promoter-TSS (ENSMUSG00000009030.14) protein_coding-promoter-TSS (ENSMUSG00000009030.14) -1123 ENSMUSG00000009030.14 ENSMUSG00000009030 ENSMUST00000147703 Pdcl protein_coding Interval_77738 chr17 94815973 94816458 + 0 NA promoter-TSS (ENSMUSG00000117499.1) TEC-promoter-TSS (ENSMUSG00000117499.1) -152 ENSMUSG00000117499.1 ENSMUSG00000117499 ENSMUST00000234240 Gm50010 TEC Interval_88451 chr2 5162830 5163400 + 0 NA intron (ENSMUSG00000026676.7, intron 2 of 2) protein_coding-intron (ENSMUSG00000026676.7, intron 2 of 2) 6723 ENSMUSG00000081005.1 ENSMUSG00000081005 ENSMUST00000119322 Gm13198 processed_pseudogene Interval_123810 chr5 35691874 35692951 + 0 NA Intergenic Intergenic -13318 ENSMUSG00000029096.15 ENSMUSG00000029096 ENSMUST00000200810 Htra3 protein_coding Interval_111909 chr4 32479313 32480422 + 0 NA intron (ENSMUSG00000040270.16, intron 1 of 4) protein_coding-intron (ENSMUSG00000040270.16, intron 3 of 7) -34920 ENSMUSG00000084611.1 ENSMUSG00000084611 ENSMUST00000122662 Gm24371 misc_RNA Interval_131259 chr5 136041158 136042262 + 0 NA intron (ENSMUSG00000042985.7, intron 3 of 5) protein_coding-intron (ENSMUSG00000042985.7, intron 3 of 5) 3214 ENSMUSG00000042985.7 ENSMUSG00000042985 ENSMUST00000062606 Upk3b protein_coding Interval_5337 chr1 87696450 87697200 + 0 NA intron (ENSMUSG00000026288.14, intron 6 of 22) protein_coding-intron (ENSMUSG00000026288.14, intron 11 of 26) 20586 ENSMUSG00000026288.14 ENSMUSG00000026288 ENSMUST00000163548 Inpp5d protein_coding Interval_122025 chr5 14179863 14181166 + 0 NA intron (ENSMUSG00000063531.7, intron 4 of 15) protein_coding-intron (ENSMUSG00000063531.7, intron 4 of 16) -49593 ENSMUSG00000063531.7 ENSMUSG00000063531 ENSMUST00000199698 Sema3e protein_coding Interval_169713 chr9 100596281 100598539 + 0 NA promoter-TSS (ENSMUSG00000037286.15) protein_coding-promoter-TSS (ENSMUSG00000037286.15) 7578 ENSMUSG00000111164.1 ENSMUSG00000111164 ENSMUST00000215061 Gm47803 processed_pseudogene Interval_33739 chr11 118220749 118221005 + 0 NA intron (ENSMUSG00000017132.17, intron 1 of 12) protein_coding-intron (ENSMUSG00000017132.17, intron 1 of 12) -8135 ENSMUSG00000017132.17 ENSMUSG00000017132 ENSMUST00000151165 Cyth1 protein_coding Interval_44331 chr13 43739458 43740459 + 0 NA Intergenic Intergenic 23167 ENSMUSG00000110016.1 ENSMUSG00000110016 ENSMUST00000210260 Gm20751 lincRNA Interval_67233 chr16 44626746 44627021 + 0 NA Intergenic Intergenic -67986 ENSMUSG00000022687.12 ENSMUSG00000022687 ENSMUST00000114634 Boc protein_coding Interval_65877 chr16 29990545 29990789 + 0 NA Intergenic Intergenic -11483 ENSMUSG00000075286.4 ENSMUSG00000075286 ENSMUST00000100016 Gm1968 lincRNA Interval_163328 chr9 20898102 20899003 + 0 NA promoter-TSS (ENSMUSG00000070319.6) protein_coding-promoter-TSS (ENSMUSG00000070319.6) 30 ENSMUSG00000070319.6 ENSMUSG00000070319 ENSMUST00000216133 Eif3g protein_coding Interval_68885 chr16 87784143 87785538 + 0 NA intron (ENSMUSG00000055972.5, intron 1 of 2) lincRNA-intron (ENSMUSG00000055972.5, intron 1 of 2) -2732 ENSMUSG00000055972.5 ENSMUSG00000055972 ENSMUST00000189929 2810407A14Rik lincRNA Interval_92429 chr2 59675555 59677025 + 0 NA intron (ENSMUSG00000035168.16, intron 1 of 25) protein_coding-intron (ENSMUSG00000035168.16, intron 2 of 26) -111606 ENSMUSG00000081157.1 ENSMUSG00000081157 ENSMUST00000118837 Gm13552 processed_pseudogene Interval_155917 chr8 41022187 41023190 + 0 NA exon (ENSMUSG00000084960.1, exon 3 of 3) antisense-exon (ENSMUSG00000084960.1, exon 3 of 3) 4950 ENSMUSG00000084960.1 ENSMUSG00000084960 ENSMUST00000152188 B430010I23Rik antisense Interval_159885 chr8 104641066 104642609 + 0 NA promoter-TSS (ENSMUSG00000031879.14) protein_coding-promoter-TSS (ENSMUSG00000031879.14) 30 ENSMUSG00000023737.14 ENSMUSG00000023737 ENSMUST00000067136 1700082M22Rik antisense Interval_163054 chr9 14854590 14855089 + 0 NA Intergenic Intergenic -9127 ENSMUSG00000059658.5 ENSMUSG00000059658 ENSMUST00000161469 Gm16379 processed_pseudogene Interval_59264 chr15 50328141 50328955 + 0 NA intron (ENSMUSG00000115478.1, intron 2 of 2) lincRNA-intron (ENSMUSG00000115478.1, intron 2 of 2) 41650 ENSMUSG00000115478.1 ENSMUSG00000115478 ENSMUST00000227182 Gm49198 lincRNA Interval_140735 chr6 120939827 120940703 + 0 NA intron (ENSMUSG00000051586.17, intron 31 of 33) protein_coding-intron (ENSMUSG00000051586.17, intron 13 of 15) -11636 ENSMUSG00000108232.1 ENSMUSG00000108232 ENSMUST00000205062 Gm43916 antisense Interval_3522 chr1 59314832 59315635 + 0 NA intron (ENSMUSG00000026023.16, intron 3 of 4) protein_coding-intron (ENSMUSG00000026023.16, intron 10 of 13) 16297 ENSMUSG00000026023.16 ENSMUSG00000026023 ENSMUST00000162906 Cdk15 protein_coding Interval_85159 chr19 23216223 23216489 + 0 NA promoter-TSS (ENSMUSG00000024943.9) protein_coding-promoter-TSS (ENSMUSG00000024943.9) 56243 ENSMUSG00000024943.9 ENSMUSG00000024943 ENSMUST00000224723 Smc5 protein_coding Interval_149430 chr7 98471161 98471845 + 0 NA promoter-TSS (ENSMUSG00000074003.4) protein_coding-promoter-TSS (ENSMUSG00000074003.4) -30 ENSMUSG00000074003.4 ENSMUSG00000074003 ENSMUST00000206524 Gucy2d protein_coding Interval_19555 chr10 103136730 103137004 + 0 NA TTS (ENSMUSG00000019892.13) protein_coding-TTS (ENSMUSG00000019892.13) 15631 ENSMUSG00000077528.1 ENSMUSG00000077528 ENSMUST00000104340 Gm25376 snoRNA Interval_66405 chr16 33684085 33685445 + 0 NA exon (ENSMUSG00000075254.12, exon 1 of 17) protein_coding-exon (ENSMUSG00000075254.12, exon 1 of 17) 395 ENSMUSG00000075254.12 ENSMUSG00000075254 ENSMUST00000146518 Heg1 protein_coding Interval_166824 chr9 63048996 63049250 + 0 NA Intergenic Intergenic 21563 ENSMUSG00000064855.1 ENSMUSG00000064855 ENSMUST00000082921 Gm24526 snRNA Interval_11786 chr1 185425836 185426865 + 0 NA intron (ENSMUSG00000026615.14, intron 30 of 31) protein_coding-intron (ENSMUSG00000026615.14, intron 30 of 31) -5663 ENSMUSG00000118510.1 ENSMUSG00000118510 ENSMUST00000238834 AC131980.1 processed_pseudogene Interval_114004 chr4 62391530 62392420 + 0 NA TTS (ENSMUSG00000066150.12) protein_coding-TTS (ENSMUSG00000066150.12) 6474 ENSMUSG00000066150.12 ENSMUSG00000066150 ENSMUST00000122092 Slc31a1 protein_coding Interval_66402 chr16 33659583 33660442 + 0 NA intron (ENSMUSG00000035506.16, intron 8 of 8) protein_coding-intron (ENSMUSG00000035506.16, intron 12 of 12) -24358 ENSMUSG00000075254.12 ENSMUSG00000075254 ENSMUST00000146518 Heg1 protein_coding Interval_96131 chr2 119946321 119947409 + 0 NA TTS (ENSMUSG00000033943.15) protein_coding-TTS (ENSMUSG00000033943.15) -26038 ENSMUSG00000033902.12 ENSMUSG00000033902 ENSMUST00000148161 Mapkbp1 protein_coding Interval_95230 chr2 105038094 105038359 + 0 NA Intergenic Intergenic -5939 ENSMUSG00000083487.1 ENSMUSG00000083487 ENSMUST00000119148 Gm13888 processed_pseudogene Interval_29706 chr11 86231266 86232534 + 0 NA intron (ENSMUSG00000018068.13, intron 1 of 3) protein_coding-intron (ENSMUSG00000018068.13, intron 15 of 24) 276 ENSMUSG00000018068.13 ENSMUSG00000018068 ENSMUST00000141756 Ints2 protein_coding Interval_59598 chr15 55845967 55846172 + 0 NA intron (ENSMUSG00000060429.12, intron 1 of 1) protein_coding-intron (ENSMUSG00000060429.12, intron 1 of 6) 60241 ENSMUSG00000060429.12 ENSMUSG00000060429 ENSMUST00000140574 Sntb1 protein_coding Interval_33869 chr11 119090329 119091982 + 0 NA Intergenic Intergenic -4934 ENSMUSG00000039989.7 ENSMUSG00000039989 ENSMUST00000145058 Cbx4 protein_coding Interval_130865 chr5 132737686 132738608 + 0 NA Intergenic Intergenic -58006 ENSMUSG00000103500.1 ENSMUSG00000103500 ENSMUST00000192042 Gm38373 TEC Interval_23563 chr11 23379139 23379845 + 0 NA intron (ENSMUSG00000056342.16, intron 21 of 79) protein_coding-intron (ENSMUSG00000056342.16, intron 21 of 79) 72597 ENSMUSG00000056342.16 ENSMUSG00000056342 ENSMUST00000125701 Usp34 protein_coding Interval_25209 chr11 45408331 45408646 + 0 NA TTS (ENSMUSG00000085476.1) lincRNA-TTS (ENSMUSG00000085476.1) 12296 ENSMUSG00000085476.1 ENSMUSG00000085476 ENSMUST00000123422 Gm12162 lincRNA Interval_77094 chr17 86484261 86484548 + 0 NA intron (ENSMUSG00000045038.14, intron 6 of 14) protein_coding-intron (ENSMUSG00000045038.14, intron 7 of 15) -6158 ENSMUSG00000045038.14 ENSMUSG00000045038 ENSMUST00000136986 Prkce protein_coding Interval_66159 chr16 32029021 32029976 + 0 NA intron (ENSMUSG00000022781.8, intron 11 of 14) protein_coding-intron (ENSMUSG00000022781.8, intron 11 of 14) 14502 ENSMUSG00000022781.8 ENSMUSG00000022781 ENSMUST00000125019 Pak2 protein_coding Interval_106328 chr3 95405236 95405747 + 0 NA Intergenic Intergenic -2650 ENSMUSG00000105734.1 ENSMUSG00000105734 ENSMUST00000196239 4930558C23Rik protein_coding Interval_80320 chr18 39171081 39171380 + 0 NA intron (ENSMUSG00000036452.18, intron 11 of 22) protein_coding-intron (ENSMUSG00000036452.18, intron 11 of 22) -120205 ENSMUSG00000036452.18 ENSMUSG00000036452 ENSMUST00000133247 Arhgap26 protein_coding Interval_116309 chr4 109601865 109602859 + 0 NA intron (ENSMUSG00000087641.1, intron 1 of 2) processed_transcript-intron (ENSMUSG00000087641.1, intron 1 of 2) -27220 ENSMUSG00000082771.1 ENSMUSG00000082771 ENSMUST00000118907 Gm12803 processed_pseudogene Interval_67838 chr16 57606172 57607586 + 0 NA promoter-TSS (ENSMUSG00000022748.8) protein_coding-promoter-TSS (ENSMUSG00000022748.8) -15 ENSMUSG00000022748.8 ENSMUSG00000022748 ENSMUST00000232413 Cmss1 protein_coding Interval_93810 chr2 77115040 77116617 + 0 NA intron (ENSMUSG00000044033.16, intron 5 of 23) protein_coding-intron (ENSMUSG00000044033.16, intron 5 of 11) -41476 ENSMUSG00000105724.1 ENSMUSG00000105724 ENSMUST00000200081 Gm44360 miRNA Interval_162706 chr9 7928990 7930153 + 0 NA Intergenic Intergenic -36267 ENSMUSG00000092185.1 ENSMUSG00000092185 ENSMUST00000174760 Gm20416 processed_transcript Interval_138732 chr6 91509277 91510701 + 0 NA intron (ENSMUSG00000030094.8, intron 1 of 2) protein_coding-intron (ENSMUSG00000030094.8, intron 2 of 15) 5895 ENSMUSG00000030094.8 ENSMUSG00000030094 ENSMUST00000206476 Xpc protein_coding Interval_9350 chr1 156512348 156513324 + 0 NA Intergenic Intergenic -11176 ENSMUSG00000101523.2 ENSMUSG00000101523 ENSMUST00000190422 Csnk2a3 processed_pseudogene Interval_112713 chr4 44340773 44341043 + 0 NA intron (ENSMUSG00000035683.13, intron 12 of 17) protein_coding-intron (ENSMUSG00000035683.13, intron 12 of 17) -26850 ENSMUSG00000081127.1 ENSMUSG00000081127 ENSMUST00000118668 Gm12677 processed_pseudogene Interval_17783 chr10 80053168 80054476 + 0 NA promoter-TSS (ENSMUSG00000075706.10) protein_coding-promoter-TSS (ENSMUSG00000075706.10) -643 ENSMUSG00000075706.10 ENSMUSG00000075706 ENSMUST00000136081 Gpx4 protein_coding Interval_38194 chr12 76292782 76293788 + 0 NA promoter-TSS (ENSMUSG00000021048.7) protein_coding-promoter-TSS (ENSMUSG00000021048.7) 13698 ENSMUSG00000112784.1 ENSMUSG00000112784 ENSMUST00000218341 Gm34868 antisense Interval_172564 chrX 36807605 36808330 + 0 NA Intergenic Intergenic -6804 ENSMUSG00000084990.1 ENSMUSG00000084990 ENSMUST00000154993 Gm14549 antisense Interval_149939 chr7 102967324 102967694 + 0 NA exon (ENSMUSG00000073962.9, exon 2 of 2) protein_coding-exon (ENSMUSG00000073962.9, exon 2 of 2) 2407 ENSMUSG00000073962.9 ENSMUSG00000073962 ENSMUST00000185326 Olfr576 protein_coding Interval_152543 chr7 134057465 134057687 + 0 NA intron (ENSMUSG00000054555.11, intron 3 of 6) protein_coding-intron (ENSMUSG00000054555.11, intron 3 of 22) 42702 ENSMUSG00000108478.1 ENSMUSG00000108478 ENSMUST00000206856 Gm19514 TEC Interval_91796 chr2 49695142 49695428 + 0 NA intron (ENSMUSG00000026764.15, intron 7 of 25) protein_coding-intron (ENSMUSG00000026764.15, intron 7 of 25) 14786 ENSMUSG00000082879.1 ENSMUSG00000082879 ENSMUST00000120607 Gm13525 processed_pseudogene Interval_456 chr1 5588238 5589200 + 0 NA promoter-TSS (ENSMUSG00000025905.14) protein_coding-promoter-TSS (ENSMUSG00000025905.14) 226 ENSMUSG00000025905.14 ENSMUSG00000025905 ENSMUST00000159083 Oprk1 protein_coding Interval_145412 chr7 34590424 34591794 + 0 NA Intergenic Intergenic 43903 ENSMUSG00000086631.2 ENSMUSG00000086631 ENSMUST00000206001 Gm12784 lincRNA Interval_75451 chr17 66627174 66627482 + 0 NA Intergenic Intergenic -2286 ENSMUSG00000117186.1 ENSMUSG00000117186 ENSMUST00000233257 Gm46576 processed_pseudogene Interval_109461 chr3 142677529 142678881 + 0 NA Intergenic Intergenic -12699 ENSMUSG00000105170.1 ENSMUSG00000105170 ENSMUST00000196041 Gm19166 processed_pseudogene Interval_105042 chr3 80014442 80015052 + 0 NA Intergenic Intergenic -40145 ENSMUSG00000103181.1 ENSMUSG00000103181 ENSMUST00000194077 A330069K06Rik lincRNA Interval_59237 chr15 49395731 49396214 + 0 NA Intergenic Intergenic -142223 ENSMUSG00000065760.1 ENSMUSG00000065760 ENSMUST00000083826 Gm23848 snRNA Interval_7092 chr1 125675713 125675968 + 0 NA Intergenic Intergenic -7224 ENSMUSG00000101015.1 ENSMUSG00000101015 ENSMUST00000191239 Gm18444 processed_pseudogene Interval_118580 chr4 132610769 132611973 + 0 NA Intergenic Intergenic -27675 ENSMUSG00000028886.15 ENSMUSG00000028886 ENSMUST00000130833 Eya3 protein_coding Interval_93638 chr2 75376811 75377111 + 0 NA Intergenic Intergenic -28256 ENSMUSG00000102473.1 ENSMUSG00000102473 ENSMUST00000193407 Gm37243 TEC Interval_158022 chr8 78109358 78111064 + 0 NA Intergenic Intergenic 2251 ENSMUSG00000109948.1 ENSMUSG00000109948 ENSMUST00000210236 Gm45288 processed_pseudogene Interval_13055 chr10 10667108 10667959 + 0 NA Intergenic Intergenic 4379 ENSMUSG00000087884.1 ENSMUSG00000087884 ENSMUST00000157259 Gm23601 snoRNA Interval_122078 chr5 16431149 16432017 + 0 NA Intergenic Intergenic 77600 ENSMUSG00000097941.1 ENSMUSG00000097941 ENSMUST00000183005 Gm8984 processed_pseudogene Interval_9009 chr1 153062699 153063153 + 0 NA intron (ENSMUSG00000042751.14, intron 1 of 1) protein_coding-intron (ENSMUSG00000042751.14, intron 1 of 10) 26581 ENSMUSG00000099969.1 ENSMUSG00000099969 ENSMUST00000190117 Gm28960 antisense Interval_16590 chr10 64675180 64675378 + 0 NA intron (ENSMUSG00000060843.11, intron 12 of 17) protein_coding-intron (ENSMUSG00000060843.11, intron 11 of 16) -370535 ENSMUSG00000089003.1 ENSMUSG00000089003 ENSMUST00000158378 Gm23854 snRNA Interval_100302 chr2 168274129 168275170 + 0 NA intron (ENSMUSG00000074575.4, intron 1 of 1) protein_coding-intron (ENSMUSG00000074575.4, intron 1 of 2) 7087 ENSMUSG00000074575.4 ENSMUSG00000074575 ENSMUST00000131749 Kcng1 protein_coding Interval_51989 chr14 34458788 34460513 + 0 NA intron (ENSMUSG00000021796.15, intron 3 of 4) protein_coding-intron (ENSMUSG00000021796.15, intron 2 of 12) -42065 ENSMUSG00000090779.1 ENSMUSG00000090779 ENSMUST00000171248 Gm17110 antisense Interval_37892 chr12 72831748 72832743 + 0 NA Intergenic Intergenic 14533 ENSMUSG00000113779.1 ENSMUSG00000113779 ENSMUST00000222961 Gm33785 lincRNA Interval_147208 chr7 64531123 64531433 + 0 NA intron (ENSMUSG00000030519.14, intron 1 of 2) protein_coding-intron (ENSMUSG00000030519.14, intron 1 of 14) 1853 ENSMUSG00000108721.1 ENSMUSG00000108721 ENSMUST00000206978 Gm44721 TEC Interval_57563 chr15 12380709 12380965 + 0 NA intron (ENSMUSG00000022197.16, intron 18 of 23) protein_coding-intron (ENSMUSG00000022197.16, intron 18 of 23) 31543 ENSMUSG00000022197.16 ENSMUSG00000022197 ENSMUST00000189746 Pdzd2 protein_coding Interval_142390 chr6 141372652 141372855 + 0 NA intron (ENSMUSG00000041741.10, intron 1 of 5) protein_coding-intron (ENSMUSG00000041741.10, intron 1 of 15) 32200 ENSMUSG00000107456.1 ENSMUSG00000107456 ENSMUST00000203920 Gm10400 TEC Interval_38292 chr12 76951537 76952151 + 0 NA TTS (ENSMUSG00000059436.13) protein_coding-TTS (ENSMUSG00000059436.13) 2565 ENSMUSG00000059436.13 ENSMUSG00000059436 ENSMUST00000219538 Max protein_coding Interval_149254 chr7 96716405 96716627 + 0 NA intron (ENSMUSG00000048078.16, intron 4 of 4) protein_coding-intron (ENSMUSG00000048078.16, intron 10 of 32) -80125 ENSMUSG00000048078.16 ENSMUSG00000048078 ENSMUST00000147659 Tenm4 protein_coding Interval_112908 chr4 45951822 45952205 + 0 NA Intergenic Intergenic 61710 ENSMUSG00000035539.14 ENSMUSG00000035539 ENSMUST00000151024 Ccdc180 protein_coding Interval_84105 chr19 7240280 7241651 + 0 NA promoter-TSS (ENSMUSG00000024764.10) protein_coding-promoter-TSS (ENSMUSG00000024764.10) 89 ENSMUSG00000024764.10 ENSMUSG00000024764 ENSMUST00000235323 Naa40 protein_coding Interval_128358 chr5 112760567 112760967 + 0 NA intron (ENSMUSG00000072720.9, intron 4 of 10) protein_coding-intron (ENSMUSG00000072720.9, intron 37 of 43) -32565 ENSMUSG00000098230.7 ENSMUSG00000098230 ENSMUST00000189887 1700095B10Rik antisense Interval_91577 chr2 43779529 43779757 + 0 NA intron (ENSMUSG00000049744.15, intron 1 of 5) protein_coding-intron (ENSMUSG00000049744.15, intron 1 of 13) 30774 ENSMUSG00000049744.15 ENSMUSG00000049744 ENSMUST00000128630 Arhgap15 protein_coding Interval_14872 chr10 40673558 40675070 + 0 NA exon (ENSMUSG00000063428.8, exon 5 of 5) protein_coding-exon (ENSMUSG00000063428.8, exon 5 of 5) -8968 ENSMUSG00000045555.3 ENSMUSG00000045555 ENSMUST00000058747 Mettl24 protein_coding Interval_41427 chr12 113769721 113770368 + 0 NA exon (ENSMUSG00000095565.2, exon 2 of 2) IG_V_gene-exon (ENSMUSG00000095565.2, exon 2 of 2) 258 ENSMUSG00000095565.2 ENSMUSG00000095565 ENSMUST00000180013 Ighv2-9-1 IG_V_gene Interval_173830 chrX 105815694 105816003 + 0 NA intron (ENSMUSG00000031229.16, intron 30 of 34) protein_coding-intron (ENSMUSG00000031229.16, intron 30 of 34) -4035 ENSMUSG00000084678.1 ENSMUSG00000084678 ENSMUST00000122729 Gm26020 snRNA Interval_37834 chr12 72361736 72362247 + 0 NA intron (ENSMUSG00000021087.18, intron 1 of 8) protein_coding-intron (ENSMUSG00000021087.18, intron 1 of 8) -80044 ENSMUSG00000021090.16 ENSMUSG00000021090 ENSMUST00000221282 Lrrc9 protein_coding Interval_24959 chr11 42067679 42068071 + 0 NA Intergenic Intergenic 114229 ENSMUSG00000010803.13 ENSMUSG00000010803 ENSMUST00000206085 Gabra1 protein_coding Interval_75544 chr17 67934408 67935380 + 0 NA intron (ENSMUSG00000024043.13, intron 1 of 17) protein_coding-intron (ENSMUSG00000024043.13, intron 1 of 17) -61846 ENSMUSG00000024043.13 ENSMUSG00000024043 ENSMUST00000170581 Arhgap28 protein_coding Interval_5229 chr1 86586882 86587461 + 0 NA promoter-TSS (ENSMUSG00000026240.12) protein_coding-promoter-TSS (ENSMUSG00000026240.12) 4233 ENSMUSG00000026240.12 ENSMUSG00000026240 ENSMUST00000127219 Cops7b protein_coding Interval_32708 chr11 109873274 109873928 + 0 NA Intergenic Intergenic 27723 ENSMUSG00000087393.1 ENSMUSG00000087393 ENSMUST00000143247 1700023C21Rik lincRNA Interval_161287 chr8 119515290 119516495 + 0 NA promoter-TSS (ENSMUSG00000031835.16) protein_coding-promoter-TSS (ENSMUSG00000031835.16) -14598 ENSMUSG00000034224.14 ENSMUSG00000034224 ENSMUST00000133821 Slc38a8 protein_coding Interval_163218 chr9 18406121 18406734 + 0 NA intron (ENSMUSG00000074502.4, intron 1 of 1) protein_coding-intron (ENSMUSG00000074502.4, intron 2 of 2) 2007 ENSMUSG00000074502.4 ENSMUSG00000074502 ENSMUST00000098973 Ubtfl1 protein_coding Interval_122713 chr5 24832071 24833018 + 0 NA intron (ENSMUSG00000028945.9, intron 1 of 2) protein_coding-intron (ENSMUSG00000028945.9, intron 1 of 7) 10065 ENSMUSG00000028945.9 ENSMUSG00000028945 ENSMUST00000196039 Rheb protein_coding Interval_109062 chr3 135527690 135528634 + 0 NA intron (ENSMUSG00000028164.15, intron 7 of 12) protein_coding-intron (ENSMUSG00000028164.15, intron 7 of 16) -1630 ENSMUSG00000083610.1 ENSMUSG00000083610 ENSMUST00000121735 Oaz2-ps processed_pseudogene Interval_34152 chr11 120932425 120933445 + 0 NA promoter-TSS (ENSMUSG00000048445.6) protein_coding-promoter-TSS (ENSMUSG00000048445.6) -16146 ENSMUSG00000025161.16 ENSMUSG00000025161 ENSMUST00000134540 Slc16a3 protein_coding Interval_29841 chr11 87200337 87200692 + 0 NA intron (ENSMUSG00000018548.15, intron 2 of 6) protein_coding-intron (ENSMUSG00000018548.15, intron 18 of 23) 10440 ENSMUSG00000018548.15 ENSMUSG00000018548 ENSMUST00000154138 Trim37 protein_coding Interval_53243 chr14 55536122 55536788 + 0 NA intron (ENSMUSG00000115778.1, intron 1 of 1) antisense-intron (ENSMUSG00000115778.1, intron 1 of 1) -1414 ENSMUSG00000115622.1 ENSMUSG00000115622 ENSMUST00000226714 Gm49117 processed_pseudogene Interval_35659 chr12 27061624 27062426 + 0 NA intron (ENSMUSG00000094002.3, intron 3 of 4) lincRNA-intron (ENSMUSG00000094002.3, intron 3 of 4) 98478 ENSMUSG00000094002.3 ENSMUSG00000094002 ENSMUST00000183238 Gm9866 lincRNA Interval_3868 chr1 64008622 64009689 + 0 NA Intergenic Intergenic 33346 ENSMUSG00000098487.1 ENSMUSG00000098487 ENSMUST00000184798 Mir6899 miRNA Interval_141984 chr6 136353511 136354208 + 0 NA Intergenic Intergenic 25329 ENSMUSG00000094973.2 ENSMUSG00000094973 ENSMUST00000077886 Eif4a3l1 protein_coding Interval_135542 chr6 40261690 40261983 + 0 NA Intergenic Intergenic 35617 ENSMUSG00000102287.1 ENSMUSG00000102287 ENSMUST00000194702 Gm37003 TEC Interval_14927 chr10 41221940 41222195 + 0 NA intron (ENSMUSG00000038417.4, intron 21 of 22) protein_coding-intron (ENSMUSG00000038417.4, intron 21 of 22) 6022 ENSMUSG00000093933.1 ENSMUSG00000093933 ENSMUST00000104332 Gm25526 snoRNA Interval_163794 chr9 25993433 25993629 + 0 NA Intergenic Intergenic 39948 ENSMUSG00000111240.1 ENSMUSG00000111240 ENSMUST00000213586 Gm39312 lincRNA Interval_148345 chr7 80649722 80650086 + 0 NA intron (ENSMUSG00000030527.15, intron 2 of 14) protein_coding-intron (ENSMUSG00000030527.15, intron 2 of 14) 13887 ENSMUSG00000084821.1 ENSMUSG00000084821 ENSMUST00000142678 Gm15880 antisense Interval_119236 chr4 136369621 136369940 + 0 NA Intergenic Intergenic -20339 ENSMUSG00000098155.1 ENSMUSG00000098155 ENSMUST00000183225 Gm27022 lincRNA Interval_49184 chr13 109239281 109241109 + 0 NA intron (ENSMUSG00000021699.17, intron 1 of 14) protein_coding-intron (ENSMUSG00000021699.17, intron 1 of 14) -84549 ENSMUSG00000076946.2 ENSMUSG00000076946 ENSMUST00000103758 Mir582 miRNA Interval_39993 chr12 100337364 100338356 + 0 NA intron (ENSMUSG00000033530.8, intron 17 of 19) protein_coding-intron (ENSMUSG00000033530.8, intron 17 of 19) 31892 ENSMUSG00000113917.1 ENSMUSG00000113917 ENSMUST00000220812 Gm48382 TEC Interval_131791 chr5 139898500 139898773 + 0 NA intron (ENSMUSG00000105335.1, intron 2 of 2) lincRNA-intron (ENSMUSG00000105335.1, intron 2 of 2) 2827 ENSMUSG00000105335.1 ENSMUSG00000105335 ENSMUST00000196396 Gm42423 lincRNA Interval_21425 chr10 128524378 128526467 + 0 NA promoter-TSS (ENSMUSG00000100548.1) antisense-promoter-TSS (ENSMUSG00000100548.1) 94 ENSMUSG00000100548.1 ENSMUSG00000100548 ENSMUST00000188089 Gm29585 antisense Interval_139672 chr6 106606194 106606581 + 0 NA intron (ENSMUSG00000064293.14, intron 4 of 15) protein_coding-intron (ENSMUSG00000064293.14, intron 11 of 15) -49116 ENSMUSG00000064293.14 ENSMUSG00000064293 ENSMUST00000142626 Cntn4 protein_coding Interval_107187 chr3 104440024 104440844 + 0 NA intron (ENSMUSG00000032913.13, intron 1 of 1) protein_coding-intron (ENSMUSG00000032913.13, intron 1 of 1) -22107 ENSMUSG00000106453.1 ENSMUSG00000106453 ENSMUST00000200606 Gm9273 processed_pseudogene Interval_139129 chr6 95678980 95679918 + 0 NA intron (ENSMUSG00000061838.7, intron 1 of 10) protein_coding-intron (ENSMUSG00000061838.7, intron 1 of 10) -21981 ENSMUSG00000061838.7 ENSMUSG00000061838 ENSMUST00000203109 Suclg2 protein_coding Interval_100020 chr2 166563885 166565717 + 0 NA Intergenic Intergenic -55627 ENSMUSG00000085682.2 ENSMUSG00000085682 ENSMUST00000123480 Gm14267 transcribed_processed_pseudogene Interval_45601 chr13 56183402 56183911 + 0 NA Intergenic Intergenic -4771 ENSMUSG00000049625.6 ENSMUSG00000049625 ENSMUST00000225063 Tifab protein_coding Interval_72552 chr17 30638751 30639500 + 0 NA intron (ENSMUSG00000033826.10, intron 2 of 90) protein_coding-intron (ENSMUSG00000033826.10, intron 3 of 92) -12220 ENSMUSG00000099474.1 ENSMUSG00000099474 ENSMUST00000188852 1700097N02Rik bidirectional_promoter_lncRNA Interval_74588 chr17 53559434 53562354 + 0 NA Intergenic Intergenic -21443 ENSMUSG00000044957.3 ENSMUSG00000044957 ENSMUST00000056198 Pp2d1 protein_coding Interval_39658 chr12 91837318 91837630 + 0 NA intron (ENSMUSG00000020964.14, intron 3 of 3) protein_coding-intron (ENSMUSG00000020964.14, intron 3 of 20) 11683 ENSMUSG00000020964.14 ENSMUSG00000020964 ENSMUST00000169843 Sel1l protein_coding Interval_157024 chr8 64580045 64580261 + 0 NA Intergenic Intergenic 41844 ENSMUSG00000037852.8 ENSMUSG00000037852 ENSMUST00000211312 Cpe protein_coding Interval_19625 chr10 106005395 106007182 + 0 NA Intergenic Intergenic 49791 ENSMUSG00000088084.1 ENSMUSG00000088084 ENSMUST00000157459 Gm25342 snoRNA Interval_159681 chr8 96842098 96842456 + 0 NA Intergenic Intergenic 186148 ENSMUSG00000077938.1 ENSMUSG00000077938 ENSMUST00000104745 Gm24132 miRNA Interval_167583 chr9 70665089 70665779 + 0 NA Intergenic Intergenic -8287 ENSMUSG00000042444.10 ENSMUSG00000042444 ENSMUST00000214293 Mindy2 protein_coding Interval_107605 chr3 108839998 108840917 + 0 NA promoter-TSS (ENSMUSG00000027882.18) protein_coding-promoter-TSS (ENSMUSG00000027882.18) 58 ENSMUSG00000027882.18 ENSMUSG00000027882 ENSMUST00000106596 Stxbp3 protein_coding Interval_141555 chr6 129232528 129233160 + 0 NA TTS (ENSMUSG00000097354.7) lincRNA-TTS (ENSMUSG00000097354.7) 5147 ENSMUSG00000097354.7 ENSMUSG00000097354 ENSMUST00000204328 2310001H17Rik lincRNA Interval_33030 chr11 113773388 113773898 + 0 NA Intergenic Intergenic 16941 ENSMUSG00000083090.1 ENSMUSG00000083090 ENSMUST00000121468 Gm11736 processed_pseudogene Interval_137242 chr6 70695542 70695986 + 0 NA Intergenic Intergenic -2685 ENSMUSG00000095351.2 ENSMUSG00000095351 ENSMUST00000103403 Igkv3-2 IG_V_gene Interval_61178 chr15 79777559 79777879 + 0 NA promoter-TSS (ENSMUSG00000022420.16) protein_coding-promoter-TSS (ENSMUSG00000022420.16) -12838 ENSMUSG00000022420.16 ENSMUSG00000022420 ENSMUST00000161646 Dnal4 protein_coding Interval_104528 chr3 67454860 67455274 + 0 NA intron (ENSMUSG00000027774.16, intron 11 of 13) protein_coding-intron (ENSMUSG00000027774.16, intron 11 of 17) 6567 ENSMUSG00000047557.2 ENSMUSG00000047557 ENSMUST00000160202 Lxn protein_coding Interval_64570 chr16 13395292 13395497 + 0 NA intron (ENSMUSG00000009569.14, intron 7 of 14) protein_coding-intron (ENSMUSG00000009569.14, intron 9 of 16) 36973 ENSMUSG00000009569.14 ENSMUSG00000009569 ENSMUST00000149359 Mrtfb protein_coding Interval_172123 chrX 7762395 7762955 + 0 NA promoter-TSS (ENSMUSG00000000134.17) protein_coding-promoter-TSS (ENSMUSG00000000134.17) -1268 ENSMUSG00000000134.17 ENSMUSG00000000134 ENSMUST00000133456 Tfe3 protein_coding Interval_4533 chr1 74830242 74830712 + 0 NA Intergenic Intergenic -20418 ENSMUSG00000089964.1 ENSMUSG00000089964 ENSMUST00000159627 Gm16582 processed_transcript Interval_120354 chr4 148074558 148077438 + 0 NA promoter-TSS (ENSMUSG00000078494.5) antisense-promoter-TSS (ENSMUSG00000078494.5) -2982 ENSMUSG00000078494.5 ENSMUSG00000078494 ENSMUST00000144031 Gm13201 antisense Interval_20040 chr10 112440381 112440584 + 0 NA intron (ENSMUSG00000035681.7, intron 2 of 4) protein_coding-intron (ENSMUSG00000035681.7, intron 2 of 4) -15774 ENSMUSG00000035681.7 ENSMUSG00000035681 ENSMUST00000218827 Kcnc2 protein_coding Interval_9292 chr1 155895682 155896532 + 0 NA intron (ENSMUSG00000033671.18, intron 26 of 37) protein_coding-intron (ENSMUSG00000033671.18, intron 26 of 37) -13561 ENSMUSG00000102837.1 ENSMUSG00000102837 ENSMUST00000191750 Gm37383 TEC Interval_64003 chr16 5178627 5179007 + 0 NA intron (ENSMUSG00000091712.2, intron 12 of 15) protein_coding-intron (ENSMUSG00000091712.2, intron 12 of 15) 18948 ENSMUSG00000023143.10 ENSMUSG00000023143 ENSMUST00000144490 Nagpa protein_coding Interval_23545 chr11 23288315 23288517 + 0 NA TTS (ENSMUSG00000020290.14) protein_coding-TTS (ENSMUSG00000020290.14) 3772 ENSMUSG00000020290.14 ENSMUSG00000020290 ENSMUST00000150750 Xpo1 protein_coding Interval_173728 chrX 103185897 103187010 + 0 NA exon (ENSMUSG00000082229.1, exon 1 of 1) protein_coding-exon (ENSMUSG00000082229.1, exon 1 of 1) 187 ENSMUSG00000082229.1 ENSMUSG00000082229 ENSMUST00000121720 Nap1l2 protein_coding Interval_69681 chr16 95434365 95434584 + 0 NA intron (ENSMUSG00000040732.20, intron 2 of 10) protein_coding-intron (ENSMUSG00000040732.20, intron 2 of 9) -78798 ENSMUSG00000116720.1 ENSMUSG00000116720 ENSMUST00000232605 Gm31641 antisense Interval_86388 chr19 39959366 39959837 + 0 NA Intergenic Intergenic 13201 ENSMUSG00000117738.1 ENSMUSG00000117738 ENSMUST00000237118 Cyp2c71-ps processed_pseudogene Interval_17148 chr10 72663342 72663983 + 0 NA intron (ENSMUSG00000019923.14, intron 7 of 7) protein_coding-intron (ENSMUSG00000019923.14, intron 7 of 7) 7418 ENSMUSG00000019923.14 ENSMUSG00000019923 ENSMUST00000219352 Zwint protein_coding Interval_139810 chr6 108940471 108940930 + 0 NA Intergenic Intergenic 58696 ENSMUSG00000107751.1 ENSMUSG00000107751 ENSMUST00000203838 Gm6749 processed_pseudogene Interval_154695 chr8 22632824 22633348 + 0 NA intron (ENSMUSG00000031536.6, intron 11 of 13) protein_coding-intron (ENSMUSG00000031536.6, intron 11 of 13) 9043 ENSMUSG00000031535.7 ENSMUSG00000031535 ENSMUST00000033936 Dkk4 protein_coding Interval_5937 chr1 93337256 93337478 + 0 NA TTS (ENSMUSG00000026274.11) protein_coding-TTS (ENSMUSG00000026274.11) -6288 ENSMUSG00000026275.13 ENSMUSG00000026275 ENSMUST00000127141 Ppp1r7 protein_coding Interval_41562 chr12 116314011 116314447 + 0 NA intron (ENSMUSG00000021171.8, intron 1 of 22) protein_coding-intron (ENSMUSG00000021171.8, intron 1 of 21) -33523 ENSMUSG00000021171.8 ENSMUSG00000021171 ENSMUST00000223150 Esyt2 protein_coding Interval_9814 chr1 162611233 162611456 + 0 NA Intergenic Intergenic 17723 ENSMUSG00000091743.2 ENSMUSG00000091743 ENSMUST00000066241 Gm5705 processed_pseudogene Interval_58408 chr15 34254659 34254880 + 0 NA intron (ENSMUSG00000022257.4, intron 1 of 5) protein_coding-intron (ENSMUSG00000022257.4, intron 1 of 6) 15060 ENSMUSG00000115808.1 ENSMUSG00000115808 ENSMUST00000226939 Gm18949 processed_pseudogene Interval_14329 chr10 30946120 30946351 + 0 NA Intergenic Intergenic -3750 ENSMUSG00000094008.1 ENSMUSG00000094008 ENSMUST00000178825 Gm24168 snRNA Interval_152390 chr7 132699883 132700208 + 0 NA intron (ENSMUSG00000030946.13, intron 7 of 7) protein_coding-intron (ENSMUSG00000030946.13, intron 6 of 6) -40161 ENSMUSG00000087348.1 ENSMUSG00000087348 ENSMUST00000132849 Gm15582 antisense Interval_71985 chr17 27441329 27441697 + 0 NA intron (ENSMUSG00000063239.17, intron 4 of 8) protein_coding-intron (ENSMUSG00000063239.17, intron 6 of 10) 3984 ENSMUSG00000116682.1 ENSMUSG00000116682 ENSMUST00000231804 Gm49789 TEC Interval_73691 chr17 42829343 42829757 + 0 NA exon (ENSMUSG00000061665.7, exon 1 of 1) protein_coding-exon (ENSMUSG00000061665.7, exon 1 of 1) 1480 ENSMUSG00000061665.7 ENSMUSG00000061665 ENSMUST00000233626 Cd2ap protein_coding Interval_137357 chr6 71676705 71677034 + 0 NA Intergenic Intergenic -4191 ENSMUSG00000108496.1 ENSMUSG00000108496 ENSMUST00000205719 Gm44768 processed_pseudogene Interval_62494 chr15 93478148 93478893 + 0 NA intron (ENSMUSG00000036167.16, intron 7 of 7) protein_coding-intron (ENSMUSG00000036167.16, intron 9 of 9) 41003 ENSMUSG00000036158.12 ENSMUSG00000036158 ENSMUST00000048982 Prickle1 protein_coding Interval_63114 chr15 99154974 99155816 + 0 NA intron (ENSMUSG00000051934.5, intron 2 of 3) protein_coding-intron (ENSMUSG00000051934.5, intron 2 of 3) 19542 ENSMUSG00000087991.1 ENSMUSG00000087991 ENSMUST00000157366 Gm25057 misc_RNA Interval_116739 chr4 117018890 117020028 + 0 NA promoter-TSS (ENSMUSG00000028683.14) protein_coding-promoter-TSS (ENSMUSG00000028683.14) -3693 ENSMUSG00000082249.1 ENSMUSG00000082249 ENSMUST00000120207 Gm12997 processed_pseudogene Interval_91652 chr2 45736256 45736802 + 0 NA intron (ENSMUSG00000086710.1, intron 2 of 2) lincRNA-intron (ENSMUSG00000086710.1, intron 2 of 2) 3072 ENSMUSG00000086710.1 ENSMUSG00000086710 ENSMUST00000129687 Gm13465 lincRNA Interval_140381 chr6 117691421 117692346 + 0 NA intron (ENSMUSG00000099869.6, intron 3 of 3) lincRNA-intron (ENSMUSG00000099869.6, intron 3 of 3) -24590 ENSMUSG00000104222.1 ENSMUSG00000104222 ENSMUST00000195277 Gm7292 lincRNA Interval_44918 chr13 49738362 49739162 + 0 NA Intergenic Intergenic -11703 ENSMUSG00000118398.1 ENSMUSG00000118398 ENSMUST00000238441 Gm19334 processed_pseudogene Interval_12409 chr1 193160146 193161146 + 0 NA intron (ENSMUSG00000026638.15, intron 1 of 2) protein_coding-intron (ENSMUSG00000026638.15, intron 2 of 7) -7857 ENSMUSG00000026638.15 ENSMUSG00000026638 ENSMUST00000193772 Irf6 protein_coding Interval_56938 chr14 123670734 123671841 + 0 NA intron (ENSMUSG00000032925.16, intron 2 of 10) protein_coding-intron (ENSMUSG00000032925.16, intron 2 of 10) 11162 ENSMUSG00000032925.16 ENSMUSG00000032925 ENSMUST00000132026 Itgbl1 protein_coding Interval_134562 chr6 29575789 29577158 + 0 NA intron (ENSMUSG00000012535.14, intron 8 of 23) protein_coding-intron (ENSMUSG00000012535.14, intron 7 of 22) -4954 ENSMUSG00000012535.14 ENSMUSG00000012535 ENSMUST00000166844 Tnpo3 protein_coding Interval_127546 chr5 105036553 105036811 + 0 NA intron (ENSMUSG00000034438.16, intron 3 of 10) protein_coding-intron (ENSMUSG00000034438.16, intron 3 of 9) -14618 ENSMUSG00000034438.16 ENSMUSG00000034438 ENSMUST00000112718 Gbp8 protein_coding Interval_113189 chr4 49360889 49361188 + 0 NA Intergenic Intergenic 10516 ENSMUSG00000081770.1 ENSMUSG00000081770 ENSMUST00000119456 Rbpj-ps1 processed_pseudogene Interval_63951 chr16 4732102 4732425 + 0 NA intron (ENSMUSG00000004070.15, intron 1 of 1) protein_coding-intron (ENSMUSG00000004070.15, intron 1 of 5) 2394 ENSMUSG00000086944.1 ENSMUSG00000086944 ENSMUST00000132069 Gm15859 antisense Interval_100764 chr2 172422941 172423329 + 0 NA intron (ENSMUSG00000074570.14, intron 2 of 5) protein_coding-intron (ENSMUSG00000074570.14, intron 2 of 4) 17425 ENSMUSG00000087633.1 ENSMUSG00000087633 ENSMUST00000138288 Gm14455 antisense Interval_57136 chr15 6864683 6865355 + 0 NA intron (ENSMUSG00000022146.12, intron 1 of 4) protein_coding-intron (ENSMUSG00000022146.12, intron 1 of 17) 9238 ENSMUSG00000022146.12 ENSMUSG00000022146 ENSMUST00000177263 Osmr protein_coding Interval_120461 chr4 148767760 148768959 + 0 NA Intergenic Intergenic 54656 ENSMUSG00000087273.1 ENSMUSG00000087273 ENSMUST00000139895 Gm13203 lincRNA Interval_107524 chr3 108303040 108304148 + 0 NA intron (ENSMUSG00000068747.14, intron 1 of 20) protein_coding-intron (ENSMUSG00000068747.14, intron 1 of 19) 15713 ENSMUSG00000105358.1 ENSMUSG00000105358 ENSMUST00000198943 Gm43099 TEC Interval_158407 chr8 83565457 83567365 + 0 NA promoter-TSS (ENSMUSG00000033938.5) protein_coding-promoter-TSS (ENSMUSG00000033938.5) -347 ENSMUSG00000033938.5 ENSMUSG00000033938 ENSMUST00000127162 Ndufb7 protein_coding Interval_66033 chr16 31066629 31067104 + 0 NA intron (ENSMUSG00000047434.14, intron 1 of 3) protein_coding-intron (ENSMUSG00000047434.14, intron 1 of 3) 2960 ENSMUSG00000047434.14 ENSMUSG00000047434 ENSMUST00000142870 Xxylt1 protein_coding Interval_76848 chr17 84496707 84497663 + 0 NA Intergenic Intergenic 54058 ENSMUSG00000117391.1 ENSMUSG00000117391 ENSMUST00000234072 4930500A05Rik antisense Interval_154539 chr8 19197968 19198388 + 0 NA promoter-TSS (ENSMUSG00000059230.2) protein_coding-promoter-TSS (ENSMUSG00000059230.2) -528 ENSMUSG00000059230.2 ENSMUSG00000059230 ENSMUST00000081017 Defb4 protein_coding Interval_118918 chr4 134450137 134450885 + 0 NA promoter-TSS (ENSMUSG00000087343.1) antisense-promoter-TSS (ENSMUSG00000087343.1) -340 ENSMUSG00000087343.1 ENSMUSG00000087343 ENSMUST00000131110 1700021N21Rik antisense Interval_131944 chr5 140963064 140964084 + 0 NA intron (ENSMUSG00000036526.8, intron 1 of 2) protein_coding-intron (ENSMUSG00000036526.8, intron 1 of 24) 36897 ENSMUSG00000036526.8 ENSMUSG00000036526 ENSMUST00000199091 Card11 protein_coding Interval_44680 chr13 47122253 47123174 + 0 NA promoter-TSS (ENSMUSG00000038068.15) protein_coding-promoter-TSS (ENSMUSG00000038068.15) 16294 ENSMUSG00000114681.1 ENSMUSG00000114681 ENSMUST00000224610 1700026N04Rik bidirectional_promoter_lncRNA Interval_40398 chr12 104635060 104635702 + 0 NA Intergenic Intergenic 86671 ENSMUSG00000041415.10 ENSMUSG00000041415 ENSMUST00000222002 Dicer1 protein_coding Interval_170264 chr9 106543695 106543976 + 0 NA exon (ENSMUSG00000118396.2, exon 8 of 8) protein_coding-exon (ENSMUSG00000118396.2, exon 8 of 8) 851 ENSMUSG00000118396.2 ENSMUSG00000118396 ENSMUST00000062917 Iqcf2 protein_coding Interval_174790 chrX 166629091 166629919 + 0 NA Intergenic Intergenic -7963 ENSMUSG00000087677.1 ENSMUSG00000087677 ENSMUST00000156526 Gm15226 lincRNA Interval_130917 chr5 134043166 134043973 + 0 NA Intergenic Intergenic 47882 ENSMUSG00000106800.1 ENSMUSG00000106800 ENSMUST00000202497 1700030N18Rik TEC Interval_74726 chr17 56173377 56175114 + 0 NA TTS (ENSMUSG00000044469.8) protein_coding-TTS (ENSMUSG00000044469.8) -2120 ENSMUSG00000106418.1 ENSMUSG00000106418 ENSMUST00000195950 Gm44397 miRNA Interval_6308 chr1 105765323 105765616 + 0 NA TTS (ENSMUSG00000101330.1) processed_pseudogene-TTS (ENSMUSG00000101330.1) 1025 ENSMUSG00000101330.1 ENSMUSG00000101330 ENSMUST00000188288 Gm10193 processed_pseudogene Interval_95022 chr2 103186188 103187671 + 0 NA TTS (ENSMUSG00000087032.1) lincRNA-TTS (ENSMUSG00000087032.1) 8758 ENSMUSG00000087032.1 ENSMUSG00000087032 ENSMUST00000135348 Gm13874 lincRNA Interval_21219 chr10 127282204 127283843 + 0 NA TTS (ENSMUSG00000025409.14) protein_coding-TTS (ENSMUSG00000025409.14) 1348 ENSMUSG00000025409.14 ENSMUSG00000025409 ENSMUST00000156208 Mbd6 protein_coding Interval_159794 chr8 103697178 103697755 + 0 NA Intergenic Intergenic 93667 ENSMUSG00000110336.1 ENSMUSG00000110336 ENSMUST00000211119 4933400L20Rik lincRNA Interval_99035 chr2 156780486 156782389 + 0 NA TTS (ENSMUSG00000067818.6) protein_coding-TTS (ENSMUSG00000067818.6) 5983 ENSMUSG00000067818.6 ENSMUSG00000067818 ENSMUST00000131622 Myl9 protein_coding Interval_12904 chr10 7906558 7907698 + 0 NA TTS (ENSMUSG00000015755.16) protein_coding-TTS (ENSMUSG00000015755.16) 48765 ENSMUSG00000015755.16 ENSMUSG00000015755 ENSMUST00000130322 Tab2 protein_coding Interval_121887 chr5 9154763 9155079 + 0 NA promoter-TSS (ENSMUSG00000079659.5) protein_coding-promoter-TSS (ENSMUSG00000079659.5) -812 ENSMUSG00000079659.5 ENSMUSG00000079659 ENSMUST00000200542 Tmem243 protein_coding Interval_49171 chr13 109091711 109092204 + 0 NA intron (ENSMUSG00000021699.17, intron 2 of 15) protein_coding-intron (ENSMUSG00000021699.17, intron 3 of 16) 231791 ENSMUSG00000021699.17 ENSMUSG00000021699 ENSMUST00000155459 Pde4d protein_coding Interval_90353 chr2 29932012 29932320 + 0 NA promoter-TSS (ENSMUSG00000088348.1) snRNA-promoter-TSS (ENSMUSG00000088348.1) -643 ENSMUSG00000088348.1 ENSMUSG00000088348 ENSMUST00000157723 Gm23865 snRNA Interval_55884 chr14 101778328 101778706 + 0 NA intron (ENSMUSG00000033060.16, intron 1 of 30) protein_coding-intron (ENSMUSG00000033060.16, intron 1 of 30) -48702 ENSMUSG00000053821.4 ENSMUSG00000053821 ENSMUST00000066461 Gm9922 bidirectional_promoter_lncRNA Interval_96622 chr2 126593727 126594611 + 0 NA TTS (ENSMUSG00000027360.5) protein_coding-TTS (ENSMUSG00000027360.5) 25130 ENSMUSG00000027360.5 ENSMUSG00000027360 ENSMUST00000148591 Hdc protein_coding Interval_71313 chr17 22117913 22119610 + 0 NA Intergenic Intergenic 47429 ENSMUSG00000063383.5 ENSMUSG00000063383 ENSMUST00000080249 Zfp947 protein_coding Interval_60888 chr15 77529333 77529539 + 0 NA intron (ENSMUSG00000044309.8, intron 3 of 3) protein_coding-intron (ENSMUSG00000044309.8, intron 3 of 4) 3880 ENSMUSG00000044309.8 ENSMUSG00000044309 ENSMUST00000230863 Apol7c protein_coding Interval_132721 chr5 147379371 147379901 + 0 NA intron (ENSMUSG00000042817.15, intron 2 of 9) protein_coding-intron (ENSMUSG00000042817.15, intron 2 of 23) -19918 ENSMUSG00000097228.1 ENSMUSG00000097228 ENSMUST00000181648 Gm26597 antisense Interval_40249 chr12 102742998 102744346 + 0 NA promoter-TSS (ENSMUSG00000046675.7) protein_coding-promoter-TSS (ENSMUSG00000046675.7) -11 ENSMUSG00000096458.7 ENSMUSG00000096458 ENSMUST00000178384 Moap1 protein_coding Interval_26234 chr11 55336567 55337030 + 0 NA promoter-TSS (ENSMUSG00000055333.14) protein_coding-promoter-TSS (ENSMUSG00000055333.14) -24541 ENSMUSG00000055333.14 ENSMUSG00000055333 ENSMUST00000108864 Fat2 protein_coding Interval_139292 chr6 97961676 97962589 + 0 NA intron (ENSMUSG00000035158.15, intron 2 of 9) protein_coding-intron (ENSMUSG00000035158.15, intron 2 of 9) -29789 ENSMUSG00000035158.15 ENSMUSG00000035158 ENSMUST00000203938 Mitf protein_coding Interval_103655 chr3 51422899 51423791 + 0 NA promoter-TSS (ENSMUSG00000103191.1) TEC-promoter-TSS (ENSMUSG00000103191.1) -268 ENSMUSG00000103191.1 ENSMUSG00000103191 ENSMUST00000191756 Gm37646 TEC Interval_31334 chr11 100039900 100040089 + 0 NA exon (ENSMUSG00000043485.2, exon 3 of 7) protein_coding-exon (ENSMUSG00000043485.2, exon 3 of 7) 1560 ENSMUSG00000043485.2 ENSMUSG00000043485 ENSMUST00000056362 Krt34 protein_coding Interval_25615 chr11 50217796 50218225 + 0 NA intron (ENSMUSG00000036620.14, intron 1 of 2) protein_coding-intron (ENSMUSG00000036620.14, intron 1 of 2) -10691 ENSMUSG00000015837.15 ENSMUSG00000015837 ENSMUST00000154805 Sqstm1 protein_coding Interval_97171 chr2 131993412 131993776 + 0 NA exon (ENSMUSG00000027339.15, exon 11 of 11) protein_coding-exon (ENSMUSG00000027339.15, exon 11 of 11) 27579 ENSMUSG00000027339.15 ENSMUSG00000027339 ENSMUST00000140791 Rassf2 protein_coding Interval_104653 chr3 69156664 69156967 + 0 NA exon (ENSMUSG00000094763.3, exon 3 of 3) lincRNA-exon (ENSMUSG00000094763.3, exon 3 of 3) 25582 ENSMUSG00000094763.3 ENSMUSG00000094763 ENSMUST00000195406 Gm1647 lincRNA Interval_7391 chr1 130838150 130838567 + 0 NA intron (ENSMUSG00000026417.13, intron 2 of 3) protein_coding-intron (ENSMUSG00000026417.13, intron 2 of 10) 9348 ENSMUSG00000026417.13 ENSMUSG00000026417 ENSMUST00000137782 Pigr protein_coding Interval_165353 chr9 46538038 46538237 + 0 NA intron (ENSMUSG00000110767.1, intron 2 of 2) lincRNA-intron (ENSMUSG00000110767.1, intron 2 of 2) 5380 ENSMUSG00000110767.1 ENSMUSG00000110767 ENSMUST00000214727 Gm31432 lincRNA Interval_120348 chr4 148052597 148053451 + 0 NA intron (ENSMUSG00000029009.17, intron 1 of 5) protein_coding-intron (ENSMUSG00000029009.17, intron 9 of 11) 346 ENSMUSG00000029009.17 ENSMUSG00000029009 ENSMUST00000156113 Mthfr protein_coding Interval_158126 chr8 79042640 79042850 + 0 NA intron (ENSMUSG00000071064.15, intron 1 of 13) protein_coding-intron (ENSMUSG00000071064.15, intron 1 of 2) 14158 ENSMUSG00000071064.15 ENSMUSG00000071064 ENSMUST00000129613 Zfp827 protein_coding Interval_9169 chr1 154472968 154473188 + 0 NA exon (ENSMUSG00000004110.17, exon 1 of 3) protein_coding-exon (ENSMUSG00000004110.17, exon 1 of 3) -149470 ENSMUSG00000100031.1 ENSMUSG00000100031 ENSMUST00000185981 Gm18727 processed_pseudogene Interval_90195 chr2 28958789 28959810 + 0 NA intron (ENSMUSG00000079502.8, intron 4 of 5) protein_coding-intron (ENSMUSG00000079502.8, intron 4 of 5) -24690 ENSMUSG00000083773.4 ENSMUSG00000083773 ENSMUST00000121658 Gm13394 processed_pseudogene Interval_41803 chr12 119644423 119644971 + 0 NA Intergenic Intergenic 34779 ENSMUSG00000113091.1 ENSMUSG00000113091 ENSMUST00000223175 Gm9279 processed_pseudogene Interval_135926 chr6 48771385 48772446 + 0 NA Intergenic Intergenic -1064 ENSMUSG00000039264.9 ENSMUSG00000039264 ENSMUST00000038811 Gimap3 protein_coding Interval_103964 chr3 55587570 55588566 + 0 NA Intergenic Intergenic -5338 ENSMUSG00000106334.1 ENSMUSG00000106334 ENSMUST00000198856 Gm43549 lincRNA Interval_39645 chr12 91763076 91763343 + 0 NA intron (ENSMUSG00000020961.15, intron 1 of 6) protein_coding-intron (ENSMUSG00000020961.15, intron 1 of 6) 7961 ENSMUSG00000020961.15 ENSMUSG00000020961 ENSMUST00000166008 Ston2 protein_coding Interval_943 chr1 13332589 13332861 + 0 NA intron (ENSMUSG00000005886.14, intron 1 of 12) protein_coding-intron (ENSMUSG00000005886.14, intron 1 of 22) 1884 ENSMUSG00000087782.1 ENSMUSG00000087782 ENSMUST00000157157 Gm23169 snRNA Interval_20759 chr10 120799233 120799749 + 0 NA intron (ENSMUSG00000051236.13, intron 1 of 2) protein_coding-intron (ENSMUSG00000051236.13, intron 5 of 6) -1186 ENSMUSG00000086444.2 ENSMUSG00000086444 ENSMUST00000156090 Gm15961 antisense Interval_27648 chr11 69271973 69272810 + 0 NA Intergenic Intergenic -21760 ENSMUSG00000087003.1 ENSMUSG00000087003 ENSMUST00000132834 Cntrobos antisense Interval_98854 chr2 155596077 155597108 + 0 NA Intergenic Intergenic -2117 ENSMUSG00000087616.1 ENSMUSG00000087616 ENSMUST00000144649 Gm14257 antisense Interval_121936 chr5 10298466 10298738 + 0 NA intron (ENSMUSG00000105157.1, intron 1 of 3) lincRNA-intron (ENSMUSG00000105157.1, intron 1 of 3) 49510 ENSMUSG00000105157.1 ENSMUSG00000105157 ENSMUST00000196240 Gm31831 lincRNA Interval_46771 chr13 70149310 70150504 + 0 NA intron (ENSMUSG00000113573.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000113573.1, intron 1 of 2) 107 ENSMUSG00000113573.1 ENSMUSG00000113573 ENSMUST00000222864 AU017674 lincRNA Interval_136511 chr6 55074083 55074349 + 0 NA intron (ENSMUSG00000029777.10, intron 13 of 16) protein_coding-intron (ENSMUSG00000029777.10, intron 13 of 16) 26153 ENSMUSG00000029777.10 ENSMUSG00000029777 ENSMUST00000203334 Gars protein_coding Interval_152875 chr7 139408854 139409554 + 0 NA intron (ENSMUSG00000025477.14, intron 1 of 15) protein_coding-intron (ENSMUSG00000025477.14, intron 1 of 15) -107455 ENSMUSG00000025477.14 ENSMUSG00000025477 ENSMUST00000152475 Inpp5a protein_coding Interval_141782 chr6 134443245 134443742 + 0 NA Intergenic Intergenic -19140 ENSMUSG00000107767.1 ENSMUSG00000107767 ENSMUST00000205104 Gm44448 lincRNA Interval_112030 chr4 33342260 33342860 + 0 NA intron (ENSMUSG00000028274.17, intron 3 of 4) protein_coding-intron (ENSMUSG00000028274.17, intron 8 of 15) 17662 ENSMUSG00000028274.17 ENSMUSG00000028274 ENSMUST00000146870 Rngtt protein_coding Interval_26391 chr11 57576206 57576697 + 0 NA Intergenic Intergenic 3939 ENSMUSG00000086028.1 ENSMUSG00000086028 ENSMUST00000128521 Gm12243 lincRNA Interval_108862 chr3 132814609 132814831 + 0 NA intron (ENSMUSG00000028030.12, intron 2 of 3) protein_coding-intron (ENSMUSG00000028030.12, intron 24 of 25) 8467 ENSMUSG00000105691.1 ENSMUSG00000105691 ENSMUST00000196989 Gm42876 TEC Interval_66764 chr16 37304652 37304937 + 0 NA intron (ENSMUSG00000022829.14, intron 5 of 27) protein_coding-intron (ENSMUSG00000022829.14, intron 5 of 22) -47958 ENSMUSG00000116854.1 ENSMUSG00000116854 ENSMUST00000232416 Gm49567 processed_pseudogene Interval_99668 chr2 164070459 164071713 + 0 NA promoter-TSS (ENSMUSG00000018322.10) protein_coding-promoter-TSS (ENSMUSG00000018322.10) -5371 ENSMUSG00000018322.10 ENSMUSG00000018322 ENSMUST00000109384 Tomm34 protein_coding Interval_167683 chr9 71896096 71896558 + 0 NA promoter-TSS (ENSMUSG00000032228.16) protein_coding-promoter-TSS (ENSMUSG00000032228.16) 3126 ENSMUSG00000102939.1 ENSMUSG00000102939 ENSMUST00000194817 Gm38111 TEC Interval_168511 chr9 82864630 82865268 + 0 NA Intergenic Intergenic 35409 ENSMUSG00000032251.12 ENSMUSG00000032251 ENSMUST00000034783 Irak1bp1 protein_coding Interval_44019 chr13 39823436 39824767 + 0 NA promoter-TSS (ENSMUSG00000114491.1) processed_transcript-promoter-TSS (ENSMUSG00000114491.1) -253 ENSMUSG00000114491.1 ENSMUSG00000114491 ENSMUST00000225918 A230103O09Rik processed_transcript Interval_33402 chr11 116361889 116362398 + 0 NA intron (ENSMUSG00000052949.14, intron 2 of 3) protein_coding-intron (ENSMUSG00000052949.14, intron 3 of 18) -14225 ENSMUSG00000052949.14 ENSMUSG00000052949 ENSMUST00000149682 Rnf157 protein_coding Interval_3655 chr1 60441574 60441851 + 0 NA intron (ENSMUSG00000026782.15, intron 3 of 3) protein_coding-intron (ENSMUSG00000026782.15, intron 3 of 8) 31931 ENSMUSG00000026782.15 ENSMUSG00000026782 ENSMUST00000190158 Abi2 protein_coding Interval_163089 chr9 15175519 15176484 + 0 NA Intergenic Intergenic 35784 ENSMUSG00000077384.1 ENSMUSG00000077384 ENSMUST00000104196 Gm22658 snRNA Interval_2508 chr1 39858540 39860316 + 0 NA Intergenic Intergenic -12098 ENSMUSG00000101634.6 ENSMUSG00000101634 ENSMUST00000186683 1700066B17Rik lincRNA Interval_71533 chr17 24389986 24390293 + 0 NA intron (ENSMUSG00000024130.16, intron 18 of 24) protein_coding-intron (ENSMUSG00000024130.16, intron 18 of 32) 24268 ENSMUSG00000073437.10 ENSMUSG00000073437 ENSMUST00000180579 D330041H03Rik processed_transcript Interval_56893 chr14 122912488 122913745 + 0 NA promoter-TSS (ENSMUSG00000041625.15) protein_coding-promoter-TSS (ENSMUSG00000041625.15) 41 ENSMUSG00000075463.3 ENSMUSG00000075463 ENSMUST00000162218 4930594M22Rik processed_transcript Interval_172207 chrX 9253907 9254299 + 0 NA intron (ENSMUSG00000079694.2, intron 1 of 2) protein_coding-intron (ENSMUSG00000047344.9, intron 3 of 4) 2796 ENSMUSG00000079694.2 ENSMUSG00000079694 ENSMUST00000115553 Gm14862 protein_coding Interval_99266 chr2 158550210 158550537 + 0 NA intron (ENSMUSG00000074625.10, intron 14 of 14) protein_coding-intron (ENSMUSG00000074625.10, intron 14 of 14) 37577 ENSMUSG00000074625.10 ENSMUSG00000074625 ENSMUST00000135838 Arhgap40 protein_coding Interval_96778 chr2 128148046 128148672 + 0 NA intron (ENSMUSG00000027381.16, intron 3 of 3) protein_coding-intron (ENSMUSG00000027381.16, intron 3 of 4) 22321 ENSMUSG00000027381.16 ENSMUSG00000027381 ENSMUST00000132201 Bcl2l11 protein_coding Interval_9959 chr1 164376800 164377593 + 0 NA intron (ENSMUSG00000026575.15, intron 1 of 5) protein_coding-intron (ENSMUSG00000026575.15, intron 8 of 12) -47517 ENSMUSG00000103493.1 ENSMUSG00000103493 ENSMUST00000194180 Gm37411 TEC Interval_32047 chr11 104685410 104686228 + 0 NA exon (ENSMUSG00000040838.10, exon 1 of 21) protein_coding-exon (ENSMUSG00000040838.10, exon 1 of 21) 112 ENSMUSG00000040838.10 ENSMUSG00000040838 ENSMUST00000175713 Gm11639 protein_coding Interval_79534 chr18 33043598 33044717 + 0 NA intron (ENSMUSG00000038128.7, intron 4 of 14) protein_coding-intron (ENSMUSG00000038128.7, intron 1 of 10) -39391 ENSMUSG00000088077.1 ENSMUSG00000088077 ENSMUST00000157452 Gm22814 snRNA Interval_126335 chr5 86786601 86787373 + 0 NA intron (ENSMUSG00000105704.1, intron 2 of 4) lincRNA-intron (ENSMUSG00000105704.1, intron 2 of 4) -3954 ENSMUSG00000104937.1 ENSMUSG00000104937 ENSMUST00000196789 Gm43057 lincRNA Interval_129942 chr5 123199109 123199408 + 0 NA intron (ENSMUSG00000029440.15, intron 2 of 3) protein_coding-intron (ENSMUSG00000029440.15, intron 2 of 3) -7670 ENSMUSG00000104606.1 ENSMUSG00000104606 ENSMUST00000195921 Gm43409 lincRNA Interval_93289 chr2 71709195 71709671 + 0 NA Intergenic Intergenic -9984 ENSMUSG00000064263.6 ENSMUSG00000064263 ENSMUST00000079720 Platr26 lincRNA Interval_120679 chr4 150061437 150061733 + 0 NA Intergenic Intergenic -6869 ENSMUSG00000065493.1 ENSMUSG00000065493 ENSMUST00000083559 Mir34a miRNA Interval_122928 chr5 27428505 27428780 + 0 NA intron (ENSMUSG00000061576.15, intron 3 of 3) protein_coding-intron (ENSMUSG00000061576.15, intron 3 of 25) 72720 ENSMUSG00000048703.9 ENSMUSG00000048703 ENSMUST00000124535 Speer4b protein_coding Interval_38537 chr12 79965260 79966909 + 0 NA Intergenic Intergenic 13767 ENSMUSG00000112292.1 ENSMUSG00000112292 ENSMUST00000219732 Gm8275 processed_pseudogene Interval_111681 chr4 25771398 25771732 + 0 NA intron (ENSMUSG00000055373.8, intron 1 of 2) protein_coding-intron (ENSMUSG00000055373.8, intron 1 of 2) 28290 ENSMUSG00000055373.8 ENSMUSG00000055373 ENSMUST00000149875 Fut9 protein_coding Interval_103269 chr3 37673364 37675145 + 0 NA Intergenic Intergenic 29647 ENSMUSG00000106062.1 ENSMUSG00000106062 ENSMUST00000199414 Gm43820 TEC Interval_70562 chr17 12042748 12042990 + 0 NA intron (ENSMUSG00000023826.16, intron 1 of 2) protein_coding-intron (ENSMUSG00000023826.16, intron 1 of 2) -76460 ENSMUSG00000023827.8 ENSMUSG00000023827 ENSMUST00000167905 Agpat4 protein_coding Interval_2159 chr1 36784554 36786356 + 0 NA Intergenic Intergenic 6471 ENSMUSG00000026117.10 ENSMUSG00000026117 ENSMUST00000190128 Zap70 protein_coding Interval_58880 chr15 39659230 39660494 + 0 NA exon (ENSMUSG00000037386.16, exon 1 of 6) protein_coding-exon (ENSMUSG00000037386.16, exon 1 of 6) -86072 ENSMUSG00000022303.9 ENSMUSG00000022303 ENSMUST00000227792 Dcstamp protein_coding Interval_104024 chr3 57487731 57488357 + 0 NA intron (ENSMUSG00000027803.14, intron 3 of 6) protein_coding-intron (ENSMUSG00000027803.14, intron 3 of 6) -40188 ENSMUSG00000083538.1 ENSMUSG00000083538 ENSMUST00000120831 Gm16016 processed_pseudogene Interval_166380 chr9 58762045 58762589 + 0 NA Intergenic Intergenic -61095 ENSMUSG00000032338.9 ENSMUSG00000032338 ENSMUST00000034889 Hcn4 protein_coding Interval_42924 chr13 21417623 21417822 + 0 NA exon (ENSMUSG00000118467.1, exon 3 of 3) unitary_pseudogene-exon (ENSMUSG00000118467.1, exon 3 of 3) 5671 ENSMUSG00000118467.1 ENSMUSG00000118467 ENSMUST00000238543 Gm50481 unitary_pseudogene Interval_11673 chr1 184525791 184526440 + 0 NA Intergenic Intergenic 31576 ENSMUSG00000101574.1 ENSMUSG00000101574 ENSMUST00000188766 1700112H15Rik lincRNA Interval_51416 chr14 27370996 27371831 + 0 NA intron (ENSMUSG00000021895.10, intron 6 of 13) protein_coding-intron (ENSMUSG00000021895.10, intron 3 of 10) 9437 ENSMUSG00000093034.1 ENSMUSG00000093034 ENSMUST00000175293 Gm23633 miRNA Interval_51338 chr14 26519826 26521208 + 0 NA intron (ENSMUSG00000021870.17, intron 1 of 22) protein_coding-intron (ENSMUSG00000021870.17, intron 1 of 22) 5963 ENSMUSG00000078128.1 ENSMUSG00000078128 ENSMUST00000104927 Gm2178 processed_pseudogene Interval_57687 chr15 15475977 15477641 + 0 NA Intergenic Intergenic -151614 ENSMUSG00000114972.1 ENSMUSG00000114972 ENSMUST00000226279 Gm49119 processed_pseudogene Interval_107546 chr3 108405662 108407377 + 0 NA intron (ENSMUSG00000068740.13, intron 2 of 33) protein_coding-intron (ENSMUSG00000068740.13, intron 2 of 33) -3930 ENSMUSG00000068740.13 ENSMUSG00000068740 ENSMUST00000147565 Celsr2 protein_coding Interval_119004 chr4 134954284 134955008 + 0 NA Intergenic Intergenic 23744 ENSMUSG00000028821.8 ENSMUSG00000028821 ENSMUST00000144037 Syf2 protein_coding Interval_143007 chr6 148309249 148309747 + 0 NA intron (ENSMUSG00000030306.14, intron 8 of 16) protein_coding-intron (ENSMUSG00000030306.14, intron 8 of 19) -45212 ENSMUSG00000063171.4 ENSMUSG00000063171 ENSMUST00000204242 Rps4l transcribed_processed_pseudogene Interval_21169 chr10 127022721 127023098 + 0 NA TTS (ENSMUSG00000040521.11) protein_coding-TTS (ENSMUSG00000040521.11) 7894 ENSMUSG00000040521.11 ENSMUSG00000040521 ENSMUST00000134917 Tsfm protein_coding Interval_134888 chr6 33172709 33173186 + 0 NA Intergenic Intergenic 75152 ENSMUSG00000082217.1 ENSMUSG00000082217 ENSMUST00000122048 Gm1401 processed_pseudogene Interval_122065 chr5 15862087 15862506 + 0 NA Intergenic Intergenic -7951 ENSMUSG00000105916.1 ENSMUSG00000105916 ENSMUST00000200477 Gm42453 processed_pseudogene Interval_64574 chr16 13415783 13416809 + 0 NA exon (ENSMUSG00000009569.14, exon 15 of 15) protein_coding-exon (ENSMUSG00000009569.14, exon 15 of 15) -33227 ENSMUSG00000076972.2 ENSMUSG00000076972 ENSMUST00000103784 Mir193b miRNA Interval_81390 chr18 60329538 60330352 + 0 NA intron (ENSMUSG00000118361.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000118361.1, intron 1 of 2) 26234 ENSMUSG00000118361.1 ENSMUSG00000118361 ENSMUST00000238180 Gm50237 lincRNA Interval_15225 chr10 43489204 43490934 + 0 NA intron (ENSMUSG00000038214.15, intron 1 of 3) protein_coding-intron (ENSMUSG00000038214.15, intron 1 of 4) 4835 ENSMUSG00000038214.15 ENSMUSG00000038214 ENSMUST00000214116 Bend3 protein_coding Interval_10259 chr1 167638084 167638672 + 0 NA intron (ENSMUSG00000015843.10, intron 10 of 10) protein_coding-intron (ENSMUSG00000015843.10, intron 9 of 9) 39918 ENSMUSG00000015843.10 ENSMUSG00000015843 ENSMUST00000111380 Rxrg protein_coding Interval_94494 chr2 91656101 91657277 + 0 NA intron (ENSMUSG00000027247.16, intron 4 of 5) protein_coding-intron (ENSMUSG00000027247.16, intron 4 of 13) 5191 ENSMUSG00000027247.16 ENSMUSG00000027247 ENSMUST00000149426 Arhgap1 protein_coding Interval_56837 chr14 122357148 122358241 + 0 NA intron (ENSMUSG00000025545.10, intron 2 of 7) protein_coding-intron (ENSMUSG00000025545.10, intron 2 of 7) 30466 ENSMUSG00000095311.1 ENSMUSG00000095311 ENSMUST00000175481 Gm25464 snRNA Interval_75108 chr17 63499013 63500974 + 0 NA promoter-TSS (ENSMUSG00000023965.13) protein_coding-promoter-TSS (ENSMUSG00000023965.13) -48282 ENSMUSG00000023965.13 ENSMUSG00000023965 ENSMUST00000090318 Fbxl17 protein_coding Interval_160359 chr8 108738224 108738531 + 0 NA exon (ENSMUSG00000104292.1, exon 1 of 1) TEC-exon (ENSMUSG00000104292.1, exon 1 of 1) 784 ENSMUSG00000104292.1 ENSMUSG00000104292 ENSMUST00000191614 Gm38042 TEC Interval_10342 chr1 169674315 169674872 + 0 NA intron (ENSMUSG00000026678.10, intron 1 of 3) protein_coding-intron (ENSMUSG00000026678.10, intron 1 of 4) 19071 ENSMUSG00000026678.10 ENSMUSG00000026678 ENSMUST00000152809 Rgs5 protein_coding Interval_85011 chr19 21381704 21382366 + 0 NA Intergenic Intergenic 58824 ENSMUSG00000058624.13 ENSMUSG00000058624 ENSMUST00000136258 Gda protein_coding Interval_100768 chr2 172439820 172441437 + 0 NA promoter-TSS (ENSMUSG00000027502.11) protein_coding-promoter-TSS (ENSMUSG00000027502.11) -68 ENSMUSG00000087633.1 ENSMUSG00000087633 ENSMUST00000138288 Gm14455 antisense Interval_41329 chr12 112873644 112874235 + 0 NA promoter-TSS (ENSMUSG00000113872.1) processed_pseudogene-promoter-TSS (ENSMUSG00000113872.1) -408 ENSMUSG00000113872.1 ENSMUSG00000113872 ENSMUST00000221247 Gm47474 processed_pseudogene Interval_124823 chr5 55725831 55726287 + 0 NA Intergenic Intergenic -2638 ENSMUSG00000106335.1 ENSMUSG00000106335 ENSMUST00000199932 Gm20223 processed_pseudogene Interval_134256 chr6 23838373 23840427 + 0 NA promoter-TSS (ENSMUSG00000017978.18) protein_coding-promoter-TSS (ENSMUSG00000017978.18) -263 ENSMUSG00000017978.18 ENSMUSG00000017978 ENSMUST00000115355 Cadps2 protein_coding Interval_118005 chr4 127819151 127819752 + 0 NA Intergenic Intergenic -7278 ENSMUSG00000087510.1 ENSMUSG00000087510 ENSMUST00000141892 1700112K13Rik lincRNA Interval_174675 chrX 162828579 162829944 + 0 NA exon (ENSMUSG00000038344.14, exon 1 of 10) protein_coding-exon (ENSMUSG00000038344.14, exon 1 of 10) 193 ENSMUSG00000038344.14 ENSMUSG00000038344 ENSMUST00000150080 Txlng protein_coding Interval_127202 chr5 101195425 101195633 + 0 NA Intergenic Intergenic -110049 ENSMUSG00000105965.1 ENSMUSG00000105965 ENSMUST00000197114 Cycs-ps2 processed_pseudogene Interval_122917 chr5 27330008 27330345 + 0 NA intron (ENSMUSG00000061576.15, intron 1 of 25) protein_coding-intron (ENSMUSG00000061576.15, intron 1 of 25) 111991 ENSMUSG00000106537.1 ENSMUSG00000106537 ENSMUST00000200263 Gm43502 TEC Interval_91676 chr2 47128656 47129464 + 0 NA Intergenic Intergenic -412924 ENSMUSG00000092853.1 ENSMUSG00000092853 ENSMUST00000175112 Gm25959 miRNA Interval_7277 chr1 128392010 128392903 + 0 NA intron (ENSMUSG00000026356.15, intron 4 of 15) protein_coding-intron (ENSMUSG00000026356.15, intron 4 of 15) -12969 ENSMUSG00000026356.15 ENSMUSG00000026356 ENSMUST00000064309 Dars protein_coding Interval_86818 chr19 44075016 44075693 + 0 NA intron (ENSMUSG00000025199.16, intron 1 of 1) protein_coding-intron (ENSMUSG00000025199.16, intron 20 of 20) 550 ENSMUSG00000025199.16 ENSMUSG00000025199 ENSMUST00000146861 Chuk protein_coding Interval_154517 chr8 18889428 18890083 + 0 NA exon (ENSMUSG00000031467.10, exon 8 of 8) protein_coding-exon (ENSMUSG00000031467.10, exon 8 of 8) 12561 ENSMUSG00000110530.1 ENSMUSG00000110530 ENSMUST00000213002 Gm35934 antisense Interval_38118 chr12 75750948 75751120 + 0 NA Intergenic Intergenic -15338 ENSMUSG00000021054.6 ENSMUSG00000021054 ENSMUST00000220285 Sgpp1 protein_coding Interval_168964 chr9 89802265 89803271 + 0 NA promoter-TSS (ENSMUSG00000065596.1) miRNA-promoter-TSS (ENSMUSG00000065596.1) -102 ENSMUSG00000098727.1 ENSMUSG00000098727 ENSMUST00000184823 1700017I07Rik lincRNA Interval_41601 chr12 116766303 116766665 + 0 NA intron (ENSMUSG00000056553.14, intron 3 of 4) protein_coding-intron (ENSMUSG00000056553.14, intron 3 of 22) 86618 ENSMUSG00000113795.1 ENSMUSG00000113795 ENSMUST00000220994 Gm48119 processed_pseudogene Interval_70282 chr17 8164847 8166193 + 0 NA promoter-TSS (ENSMUSG00000069135.11) protein_coding-promoter-TSS (ENSMUSG00000069135.11) 0 ENSMUSG00000069135.11 ENSMUSG00000069135 ENSMUST00000161898 Fgfr1op protein_coding Interval_173524 chrX 98497312 98497561 + 0 NA Intergenic Intergenic 13646 ENSMUSG00000082933.1 ENSMUSG00000082933 ENSMUST00000117070 Gm14811 processed_pseudogene Interval_137788 chr6 82491640 82491894 + 0 NA intron (ENSMUSG00000030043.11, intron 1 of 4) protein_coding-intron (ENSMUSG00000030043.11, intron 2 of 5) 89433 ENSMUSG00000030043.11 ENSMUSG00000030043 ENSMUST00000203775 Tacr1 protein_coding Interval_838 chr1 12422395 12422643 + 0 NA Intergenic Intergenic -3467 ENSMUSG00000098555.1 ENSMUSG00000098555 ENSMUST00000183490 Mir6341 miRNA Interval_21369 chr10 128203989 128205593 + 0 NA TTS (ENSMUSG00000044005.13) protein_coding-TTS (ENSMUSG00000044005.13) 7016 ENSMUSG00000051346.9 ENSMUSG00000051346 ENSMUST00000061995 Spryd4 protein_coding Interval_165011 chr9 43863603 43864494 + 0 NA Intergenic Intergenic 41954 ENSMUSG00000088044.1 ENSMUSG00000088044 ENSMUST00000157419 Gm23326 snRNA Interval_41215 chr12 111851381 111851910 + 0 NA intron (ENSMUSG00000021285.15, intron 4 of 16) protein_coding-intron (ENSMUSG00000021285.15, intron 4 of 16) 9491 ENSMUSG00000113357.1 ENSMUSG00000113357 ENSMUST00000222018 Gm19195 processed_pseudogene Interval_127907 chr5 108826792 108827132 + 0 NA Intergenic Intergenic 5241 ENSMUSG00000093756.1 ENSMUSG00000093756 ENSMUST00000175733 Gm18594 processed_pseudogene Interval_13927 chr10 24718970 24719171 + 0 NA Intergenic Intergenic -7073 ENSMUSG00000037370.13 ENSMUSG00000037370 ENSMUST00000142974 Enpp1 protein_coding Interval_108290 chr3 123359077 123360060 + 0 NA intron (ENSMUSG00000039234.11, intron 17 of 19) protein_coding-intron (ENSMUSG00000039234.11, intron 20 of 22) 26530 ENSMUSG00000028114.16 ENSMUSG00000028114 ENSMUST00000197628 Mettl14 protein_coding Interval_47214 chr13 78171042 78172392 + 0 NA promoter-TSS (ENSMUSG00000114649.1) lincRNA-promoter-TSS (ENSMUSG00000114649.1) 87 ENSMUSG00000114649.1 ENSMUSG00000114649 ENSMUST00000225503 3110006O06Rik lincRNA Interval_62239 chr15 89096131 89096365 + 0 NA intron (ENSMUSG00000035757.16, intron 4 of 4) protein_coding-intron (ENSMUSG00000035757.16, intron 4 of 8) 7164 ENSMUSG00000035757.16 ENSMUSG00000035757 ENSMUST00000082439 Selenoo protein_coding Interval_12107 chr1 189784534 189785339 + 0 NA intron (ENSMUSG00000026604.17, intron 1 of 9) protein_coding-intron (ENSMUSG00000026604.17, intron 1 of 18) -42294 ENSMUSG00000102248.1 ENSMUSG00000102248 ENSMUST00000192214 Gm30280 processed_pseudogene Interval_96031 chr2 119299877 119300715 + 0 NA Intergenic Intergenic 11509 ENSMUSG00000034216.12 ENSMUSG00000034216 ENSMUST00000151500 Vps18 protein_coding Interval_158719 chr8 85532524 85534579 + 0 NA Intergenic Intergenic 14142 ENSMUSG00000031700.11 ENSMUSG00000031700 ENSMUST00000143846 Gpt2 protein_coding Interval_134563 chr6 29591919 29592833 + 0 NA intron (ENSMUSG00000012535.14, intron 1 of 4) protein_coding-intron (ENSMUSG00000012535.14, intron 1 of 22) -20857 ENSMUSG00000012535.14 ENSMUSG00000012535 ENSMUST00000166844 Tnpo3 protein_coding Interval_170192 chr9 106099309 106100058 + 0 NA Intergenic Intergenic 4209 ENSMUSG00000103434.1 ENSMUSG00000103434 ENSMUST00000192983 Gm36993 TEC Interval_59570 chr15 55426170 55426672 + 0 NA intron (ENSMUSG00000022371.16, intron 22 of 47) protein_coding-intron (ENSMUSG00000022371.16, intron 22 of 47) 12599 ENSMUSG00000101568.1 ENSMUSG00000101568 ENSMUST00000187158 1700040F17Rik antisense Interval_150272 chr7 109174359 109176016 + 0 NA promoter-TSS (ENSMUSG00000036111.8) protein_coding-promoter-TSS (ENSMUSG00000036111.8) -4675 ENSMUSG00000036111.8 ENSMUSG00000036111 ENSMUST00000208136 Lmo1 protein_coding Interval_156223 chr8 46213790 46214650 + 0 NA Intergenic Intergenic -3190 ENSMUSG00000031633.4 ENSMUSG00000031633 ENSMUST00000155986 Slc25a4 protein_coding Interval_171576 chr9 119311271 119312090 + 0 NA intron (ENSMUSG00000036737.12, intron 1 of 18) protein_coding-intron (ENSMUSG00000036737.12, intron 1 of 17) -4923 ENSMUSG00000088713.1 ENSMUSG00000088713 ENSMUST00000158088 Gm22729 snoRNA Interval_130701 chr5 129878950 129879534 + 0 NA promoter-TSS (ENSMUSG00000025537.12) protein_coding-promoter-TSS (ENSMUSG00000025537.12) -154 ENSMUSG00000025537.12 ENSMUSG00000025537 ENSMUST00000200922 Phkg1 protein_coding Interval_105355 chr3 85397908 85399591 + 0 NA exon (ENSMUSG00000105012.1, exon 2 of 3) lincRNA-exon (ENSMUSG00000105012.1, exon 2 of 3) 29379 ENSMUSG00000105012.1 ENSMUSG00000105012 ENSMUST00000200057 Gm42813 lincRNA Interval_106322 chr3 95356009 95357443 + 0 NA exon (ENSMUSG00000103900.1, exon 1 of 1) TEC-exon (ENSMUSG00000103900.1, exon 1 of 1) 363 ENSMUSG00000015697.14 ENSMUSG00000015697 ENSMUST00000152260 Setdb1 protein_coding Interval_28635 chr11 77471267 77472210 + 0 NA TTS (ENSMUSG00000037907.16) protein_coding-TTS (ENSMUSG00000037907.16) 4698 ENSMUSG00000037907.16 ENSMUSG00000037907 ENSMUST00000127291 Ankrd13b protein_coding Interval_65061 chr16 18775792 18777839 + 0 NA promoter-TSS (ENSMUSG00000041378.2) protein_coding-promoter-TSS (ENSMUSG00000041378.2) -32 ENSMUSG00000041378.2 ENSMUSG00000041378 ENSMUST00000043577 Cldn5 protein_coding Interval_7958 chr1 134851432 134852159 + 0 NA intron (ENSMUSG00000073557.12, intron 13 of 24) protein_coding-intron (ENSMUSG00000073557.12, intron 13 of 23) 17653 ENSMUSG00000101168.1 ENSMUSG00000101168 ENSMUST00000188123 Gm28892 antisense Interval_61721 chr15 83576660 83577088 + 0 NA exon (ENSMUSG00000016757.11, exon 14 of 14) protein_coding-exon (ENSMUSG00000016757.11, exon 14 of 14) 12999 ENSMUSG00000041736.7 ENSMUSG00000041736 ENSMUST00000208463 Tspo protein_coding Interval_31951 chr11 104029480 104030669 + 0 NA Intergenic Intergenic 50485 ENSMUSG00000062421.13 ENSMUSG00000062421 ENSMUST00000154089 Arf2 protein_coding Interval_151260 chr7 120377494 120377748 + 0 NA intron (ENSMUSG00000054746.18, intron 19 of 30) protein_coding-intron (ENSMUSG00000054746.18, intron 19 of 30) 48951 ENSMUSG00000054746.18 ENSMUSG00000054746 ENSMUST00000076272 Abca15 protein_coding Interval_129131 chr5 117614465 117614901 + 0 NA intron (ENSMUSG00000061578.8, intron 4 of 20) protein_coding-intron (ENSMUSG00000061578.8, intron 4 of 20) 93984 ENSMUSG00000107199.1 ENSMUSG00000107199 ENSMUST00000201553 Gm42550 TEC Interval_84661 chr19 14808625 14808911 + 0 NA Intergenic Intergenic -90288 ENSMUSG00000084675.1 ENSMUSG00000084675 ENSMUST00000122726 Gm26026 snRNA Interval_169502 chr9 98544116 98544411 + 0 NA Intergenic Intergenic 19348 ENSMUSG00000051074.4 ENSMUSG00000051074 ENSMUST00000058992 4930579K19Rik processed_transcript Interval_99999 chr2 166339559 166339820 + 0 NA Intergenic Intergenic 58468 ENSMUSG00000087617.1 ENSMUSG00000087617 ENSMUST00000132465 Gm14268 lincRNA Interval_124812 chr5 54796815 54797252 + 0 NA Intergenic Intergenic -10301 ENSMUSG00000106126.1 ENSMUSG00000106126 ENSMUST00000197634 Gm43781 TEC Interval_155290 chr8 30923513 30924665 + 0 NA Intergenic Intergenic -79819 ENSMUSG00000109614.1 ENSMUSG00000109614 ENSMUST00000211579 Gm45252 processed_pseudogene Interval_33512 chr11 116970663 116971442 + 0 NA intron (ENSMUSG00000043857.16, intron 4 of 5) protein_coding-intron (ENSMUSG00000043857.16, intron 10 of 17) 23717 ENSMUSG00000043857.16 ENSMUSG00000043857 ENSMUST00000126757 Mgat5b protein_coding Interval_102860 chr3 32343352 32343656 + 0 NA intron (ENSMUSG00000027663.12, intron 4 of 6) protein_coding-intron (ENSMUSG00000027663.12, intron 4 of 5) 22510 ENSMUSG00000027663.12 ENSMUSG00000027663 ENSMUST00000195055 Zmat3 protein_coding Interval_19358 chr10 97712639 97712956 + 0 NA intron (ENSMUSG00000074776.4, intron 4 of 4) lincRNA-intron (ENSMUSG00000074776.4, intron 4 of 4) -1988 ENSMUSG00000112497.1 ENSMUSG00000112497 ENSMUST00000219383 4930525C09Rik lincRNA Interval_94354 chr2 90455582 90456357 + 0 NA intron (ENSMUSG00000025314.16, intron 10 of 23) protein_coding-intron (ENSMUSG00000025314.16, intron 8 of 21) -23281 ENSMUSG00000085471.1 ENSMUSG00000085471 ENSMUST00000126953 4933423P22Rik antisense Interval_65744 chr16 26949828 26950434 + 0 NA intron (ENSMUSG00000068428.7, intron 3 of 7) protein_coding-intron (ENSMUSG00000068428.7, intron 3 of 7) 18114 ENSMUSG00000068428.7 ENSMUSG00000068428 ENSMUST00000231299 Gmnc protein_coding Interval_96443 chr2 122825020 122825872 + 0 NA Intergenic Intergenic 53728 ENSMUSG00000005803.14 ENSMUSG00000005803 ENSMUST00000176343 Sqor protein_coding Interval_17388 chr10 76271386 76271661 + 0 NA promoter-TSS (ENSMUSG00000020231.15) protein_coding-promoter-TSS (ENSMUSG00000020231.15) 17670 ENSMUSG00000033208.7 ENSMUSG00000033208 ENSMUST00000036387 S100b protein_coding Interval_127645 chr5 106066776 106067743 + 0 NA Intergenic Intergenic 5174 ENSMUSG00000095052.1 ENSMUSG00000095052 ENSMUST00000180111 Gm25672 snRNA Interval_94874 chr2 99086511 99086863 + 0 NA Intergenic Intergenic 271042 ENSMUSG00000101186.1 ENSMUSG00000101186 ENSMUST00000185786 Gm29235 lincRNA Interval_165775 chr9 52629632 52629854 + 0 NA Intergenic Intergenic 50037 ENSMUSG00000078307.3 ENSMUSG00000078307 ENSMUST00000213843 AI593442 protein_coding Interval_144157 chr7 19698199 19699542 + 0 NA promoter-TSS (ENSMUSG00000002985.16) protein_coding-promoter-TSS (ENSMUSG00000002985.16) -1239 ENSMUSG00000002985.16 ENSMUSG00000002985 ENSMUST00000174191 Apoe protein_coding Interval_89582 chr2 22988954 22989547 + 0 NA intron (ENSMUSG00000058835.14, intron 2 of 10) protein_coding-intron (ENSMUSG00000058835.14, intron 2 of 9) 30417 ENSMUSG00000083650.1 ENSMUSG00000083650 ENSMUST00000120528 Gm13357 processed_pseudogene Interval_150046 chr7 105384066 105384440 + 0 NA promoter-TSS (ENSMUSG00000044465.19) protein_coding-promoter-TSS (ENSMUSG00000044465.19) 190 ENSMUSG00000044465.19 ENSMUSG00000044465 ENSMUST00000210341 Fam160a2 protein_coding Interval_163773 chr9 25543960 25544192 + 0 NA intron (ENSMUSG00000036611.5, intron 2 of 7) protein_coding-intron (ENSMUSG00000036611.5, intron 2 of 7) -4871 ENSMUSG00000088876.1 ENSMUSG00000088876 ENSMUST00000158251 Gm25861 snoRNA Interval_52269 chr14 41202051 41202998 + 0 NA Intergenic Intergenic -10871 ENSMUSG00000114927.1 ENSMUSG00000114927 ENSMUST00000224939 Gm47114 processed_pseudogene Interval_30075 chr11 89009159 89011463 + 0 NA intron (ENSMUSG00000000275.16, intron 3 of 8) protein_coding-intron (ENSMUSG00000000275.16, intron 3 of 7) 10935 ENSMUSG00000000275.16 ENSMUSG00000000275 ENSMUST00000000284 Trim25 protein_coding Interval_26676 chr11 59632979 59633625 + 0 NA Intergenic Intergenic 22717 ENSMUSG00000044061.7 ENSMUSG00000044061 ENSMUST00000055276 Olfr225 polymorphic_pseudogene Interval_111447 chr4 21722616 21723699 + 0 NA Intergenic Intergenic -4601 ENSMUSG00000028252.20 ENSMUSG00000028252 ENSMUST00000133712 Ccnc protein_coding Interval_153341 chr7 143763663 143763880 + 0 NA TTS (ENSMUSG00000050276.7) protein_coding-TTS (ENSMUSG00000050276.7) 1805 ENSMUSG00000050276.7 ENSMUSG00000050276 ENSMUST00000208986 Mrgprg protein_coding Interval_14296 chr10 30588132 30588353 + 0 NA intron (ENSMUSG00000019792.8, intron 5 of 6) protein_coding-intron (ENSMUSG00000019792.8, intron 6 of 12) 12435 ENSMUSG00000019792.8 ENSMUSG00000019792 ENSMUST00000216638 Trmt11 protein_coding Interval_27796 chr11 70043735 70044337 + 0 NA promoter-TSS (ENSMUSG00000020886.17) protein_coding-promoter-TSS (ENSMUSG00000020886.17) -10049 ENSMUSG00000020884.15 ENSMUSG00000020884 ENSMUST00000123369 Asgr1 protein_coding Interval_133304 chr5 151383087 151383335 + 0 NA intron (ENSMUSG00000097321.5, intron 2 of 3) processed_transcript-intron (ENSMUSG00000097321.5, intron 2 of 3) -16933 ENSMUSG00000097321.5 ENSMUSG00000097321 ENSMUST00000201853 1700028E10Rik processed_transcript Interval_44882 chr13 49341017 49342058 + 0 NA promoter-TSS (ENSMUSG00000037933.16) protein_coding-promoter-TSS (ENSMUSG00000037933.16) -32297 ENSMUSG00000037946.11 ENSMUSG00000037946 ENSMUST00000110086 Fgd3 protein_coding Interval_156960 chr8 62459116 62459416 + 0 NA Intergenic Intergenic 29222 ENSMUSG00000109687.1 ENSMUSG00000109687 ENSMUST00000210003 Hspd1-ps2 processed_pseudogene Interval_886 chr1 12998865 12999289 + 0 NA Intergenic Intergenic -7900 ENSMUSG00000025938.16 ENSMUSG00000025938 ENSMUST00000191566 Slco5a1 protein_coding Interval_138573 chr6 89469373 89470098 + 0 NA intron (ENSMUSG00000030086.16, intron 4 of 5) protein_coding-intron (ENSMUSG00000030086.16, intron 4 of 7) 57720 ENSMUSG00000107680.1 ENSMUSG00000107680 ENSMUST00000205126 Gm43903 TEC Interval_163882 chr9 27511890 27512741 + 0 NA Intergenic Intergenic -41165 ENSMUSG00000111694.1 ENSMUSG00000111694 ENSMUST00000214666 Gm48901 lincRNA Interval_163413 chr9 21331193 21331602 + 0 NA intron (ENSMUSG00000057193.8, intron 1 of 21) protein_coding-intron (ENSMUSG00000057193.8, intron 1 of 8) 10699 ENSMUSG00000057193.8 ENSMUSG00000057193 ENSMUST00000213535 Slc44a2 protein_coding Interval_76352 chr17 79364461 79365622 + 0 NA Intergenic Intergenic 10342 ENSMUSG00000118651.1 ENSMUSG00000118651 ENSMUST00000239444 CT030740.1 antisense Interval_17337 chr10 75954125 75954855 + 0 NA promoter-TSS (ENSMUSG00000033255.8) protein_coding-promoter-TSS (ENSMUSG00000033255.8) -8803 ENSMUSG00000082234.1 ENSMUSG00000082234 ENSMUST00000117331 Gm16221 processed_pseudogene Interval_98678 chr2 154206570 154207416 + 0 NA intron (ENSMUSG00000027485.15, intron 5 of 13) protein_coding-intron (ENSMUSG00000027485.15, intron 5 of 15) 16170 ENSMUSG00000027485.15 ENSMUSG00000027485 ENSMUST00000028987 Bpifb1 protein_coding Interval_48196 chr13 97120154 97120571 + 0 NA intron (ENSMUSG00000041817.14, intron 11 of 12) protein_coding-intron (ENSMUSG00000041817.14, intron 11 of 12) 17490 ENSMUSG00000060739.8 ENSMUSG00000060739 ENSMUST00000224980 Nsa2 protein_coding Interval_114521 chr4 82074742 82074961 + 0 NA intron (ENSMUSG00000085022.2, intron 1 of 1) lincRNA-intron (ENSMUSG00000085022.2, intron 1 of 2) 8894 ENSMUSG00000085022.2 ENSMUSG00000085022 ENSMUST00000161588 Gm5860 lincRNA Interval_156287 chr8 46975725 46976282 + 0 NA Intergenic Intergenic -27204 ENSMUSG00000109759.1 ENSMUSG00000109759 ENSMUST00000210613 1700011L03Rik lincRNA Interval_82142 chr18 68007767 68009120 + 0 NA intron (ENSMUSG00000024544.9, intron 1 of 5) protein_coding-intron (ENSMUSG00000024544.9, intron 1 of 5) 100815 ENSMUSG00000118326.1 ENSMUSG00000118326 ENSMUST00000235570 Gm8887 processed_pseudogene Interval_140625 chr6 120180525 120180825 + 0 NA intron (ENSMUSG00000041377.12, intron 1 of 3) protein_coding-intron (ENSMUSG00000041377.12, intron 1 of 3) -36925 ENSMUSG00000095086.1 ENSMUSG00000095086 ENSMUST00000180263 Gm25327 snRNA Interval_64653 chr16 13902130 13903246 + 0 NA promoter-TSS (ENSMUSG00000022679.13) protein_coding-promoter-TSS (ENSMUSG00000022679.13) 294 ENSMUSG00000022680.14 ENSMUSG00000022680 ENSMUST00000137715 Pdxdc1 protein_coding Interval_18029 chr10 81450117 81451132 + 0 NA intron (ENSMUSG00000055053.18, intron 1 of 9) protein_coding-intron (ENSMUSG00000055053.18, intron 1 of 9) 5011 ENSMUSG00000055053.18 ENSMUSG00000055053 ENSMUST00000221817 Nfic protein_coding Interval_88098 chr19 59096517 59097249 + 0 NA Intergenic Intergenic 9312 ENSMUSG00000118377.1 ENSMUSG00000118377 ENSMUST00000237392 Gm9276 processed_pseudogene Interval_127714 chr5 106995776 106996117 + 0 NA Intergenic Intergenic 21400 ENSMUSG00000029283.17 ENSMUSG00000029283 ENSMUST00000123546 Cdc7 protein_coding Interval_54074 chr14 65023856 65024205 + 0 NA intron (ENSMUSG00000021975.9, intron 10 of 16) protein_coding-intron (ENSMUSG00000021975.9, intron 10 of 16) 73985 ENSMUSG00000021975.9 ENSMUSG00000021975 ENSMUST00000225790 Ints9 protein_coding Interval_163278 chr9 20514066 20514272 + 0 NA intron (ENSMUSG00000060510.14, intron 1 of 4) protein_coding-intron (ENSMUSG00000060510.14, intron 2 of 8) 7248 ENSMUSG00000060510.14 ENSMUSG00000060510 ENSMUST00000213275 Zfp266 protein_coding Interval_39539 chr12 89611356 89611985 + 0 NA intron (ENSMUSG00000066392.12, intron 13 of 18) protein_coding-intron (ENSMUSG00000066392.12, intron 14 of 19) -44053 ENSMUSG00000114153.1 ENSMUSG00000114153 ENSMUST00000222398 Gm48692 TEC Interval_79532 chr18 33029790 33030537 + 0 NA intron (ENSMUSG00000038128.7, intron 4 of 14) protein_coding-intron (ENSMUSG00000038128.7, intron 1 of 10) -25397 ENSMUSG00000088077.1 ENSMUSG00000088077 ENSMUST00000157452 Gm22814 snRNA Interval_170397 chr9 107651261 107651904 + 0 NA exon (ENSMUSG00000010064.15, exon 16 of 16) protein_coding-exon (ENSMUSG00000010064.15, exon 16 of 16) 13879 ENSMUSG00000010064.15 ENSMUSG00000010064 ENSMUST00000193495 Slc38a3 protein_coding Interval_169498 chr9 98492438 98493234 + 0 NA intron (ENSMUSG00000032454.9, intron 1 of 1) protein_coding-intron (ENSMUSG00000032454.9, intron 1 of 3) -1132 ENSMUSG00000103579.1 ENSMUSG00000103579 ENSMUST00000195675 Gm37113 TEC Interval_60557 chr15 74923329 74923904 + 0 NA promoter-TSS (ENSMUSG00000100880.2) processed_pseudogene-promoter-TSS (ENSMUSG00000100880.2) -828 ENSMUSG00000100880.2 ENSMUSG00000100880 ENSMUST00000186324 Gm6610 processed_pseudogene Interval_80675 chr18 46211645 46213309 + 0 NA exon (ENSMUSG00000033949.12, exon 1 of 10) protein_coding-exon (ENSMUSG00000033949.12, exon 1 of 10) 13456 ENSMUSG00000103616.1 ENSMUSG00000103616 ENSMUST00000195587 1700018A14Rik TEC Interval_77595 chr17 92662055 92662244 + 0 NA Intergenic Intergenic 56927 ENSMUSG00000117625.1 ENSMUSG00000117625 ENSMUST00000234136 Gm21018 processed_pseudogene Interval_155921 chr8 41041259 41042021 + 0 NA exon (ENSMUSG00000045636.16, exon 1 of 10) protein_coding-exon (ENSMUSG00000045636.16, exon 1 of 10) 1884 ENSMUSG00000086773.1 ENSMUSG00000086773 ENSMUST00000148357 Gm16192 antisense Interval_145697 chr7 37482313 37483277 + 0 NA intron (ENSMUSG00000043456.17, intron 2 of 3) protein_coding-intron (ENSMUSG00000043456.17, intron 5 of 5) -15373 ENSMUSG00000108790.1 ENSMUSG00000108790 ENSMUST00000205574 Gm44806 TEC Interval_12847 chr10 6357988 6358696 + 0 NA Intergenic Intergenic -9334 ENSMUSG00000112179.1 ENSMUSG00000112179 ENSMUST00000219296 Gm3213 processed_pseudogene Interval_33353 chr11 116086683 116087863 + 0 NA promoter-TSS (ENSMUSG00000034341.17) protein_coding-promoter-TSS (ENSMUSG00000034341.17) -278 ENSMUSG00000034341.17 ENSMUSG00000034341 ENSMUST00000129532 Wbp2 protein_coding Interval_126031 chr5 76967810 76968532 + 0 NA TTS (ENSMUSG00000029247.17) protein_coding-TTS (ENSMUSG00000029247.17) 2014 ENSMUSG00000029247.17 ENSMUSG00000029247 ENSMUST00000154688 Paics protein_coding Interval_157747 chr8 72728906 72729377 + 0 NA intron (ENSMUSG00000031622.16, intron 3 of 3) protein_coding-intron (ENSMUSG00000031622.16, intron 3 of 18) -11710 ENSMUSG00000031622.16 ENSMUSG00000031622 ENSMUST00000212677 Sin3b protein_coding Interval_114990 chr4 88147775 88148089 + 0 NA intron (ENSMUSG00000038368.16, intron 4 of 8) protein_coding-intron (ENSMUSG00000038368.16, intron 4 of 43) -3764 ENSMUSG00000082597.1 ENSMUSG00000082597 ENSMUST00000117297 Gm12645 processed_pseudogene Interval_114408 chr4 75406015 75406226 + 0 NA Intergenic Intergenic 25360 ENSMUSG00000084026.1 ENSMUSG00000084026 ENSMUST00000120554 Gm11259 processed_pseudogene Interval_24231 chr11 31675238 31675652 + 0 NA Intergenic Intergenic -3718 ENSMUSG00000044502.16 ENSMUSG00000044502 ENSMUST00000109415 Bod1 protein_coding Interval_66796 chr16 37684649 37685396 + 0 NA Intergenic Intergenic 12318 ENSMUSG00000116529.1 ENSMUSG00000116529 ENSMUST00000231714 Gm4600 processed_pseudogene Interval_78844 chr18 20940287 20940517 + 0 NA Intergenic Intergenic -21070 ENSMUSG00000033107.6 ENSMUSG00000033107 ENSMUST00000234316 Rnf125 protein_coding Interval_155569 chr8 34680056 34680973 + 0 NA Intergenic Intergenic -21145 ENSMUSG00000109846.1 ENSMUSG00000109846 ENSMUST00000210130 Gm45627 lincRNA Interval_100696 chr2 171710052 171710474 + 0 NA Intergenic Intergenic 251868 ENSMUSG00000086823.7 ENSMUSG00000086823 ENSMUST00000125465 1700028P15Rik processed_transcript Interval_53769 chr14 61627385 61627964 + 0 NA promoter-TSS (ENSMUSG00000098183.1) lincRNA-promoter-TSS (ENSMUSG00000098183.1) -337 ENSMUSG00000098183.1 ENSMUSG00000098183 ENSMUST00000182727 Gm27010 lincRNA Interval_67044 chr16 42126225 42126613 + 0 NA intron (ENSMUSG00000061080.11, intron 5 of 8) protein_coding-intron (ENSMUSG00000061080.11, intron 3 of 5) 58498 ENSMUSG00000116841.1 ENSMUSG00000116841 ENSMUST00000232237 Gm49737 processed_pseudogene Interval_161670 chr8 121925425 121926163 + 0 NA intron (ENSMUSG00000025317.7, intron 2 of 4) protein_coding-intron (ENSMUSG00000025317.7, intron 3 of 6) 1680 ENSMUSG00000025317.7 ENSMUSG00000025317 ENSMUST00000151462 Car5a protein_coding Interval_55951 chr14 103098623 103100112 + 0 NA promoter-TSS (ENSMUSG00000022124.15) protein_coding-promoter-TSS (ENSMUSG00000022124.15) 139 ENSMUSG00000022124.15 ENSMUSG00000022124 ENSMUST00000123043 Fbxl3 protein_coding Interval_173404 chrX 89008050 89008410 + 0 NA Intergenic Intergenic 2860 ENSMUSG00000084060.3 ENSMUSG00000084060 ENSMUST00000121602 Gm16412 processed_pseudogene Interval_107474 chr3 107955326 107955601 + 0 NA Intergenic Intergenic -2342 ENSMUSG00000089664.2 ENSMUSG00000089664 ENSMUST00000121684 Gm12494 unprocessed_pseudogene Interval_128192 chr5 111621515 111622753 + 0 NA Intergenic Intergenic 28518 ENSMUSG00000104833.1 ENSMUSG00000104833 ENSMUST00000198964 Gm42489 lincRNA Interval_134404 chr6 28391942 28392171 + 0 NA intron (ENSMUSG00000039841.14, intron 1 of 6) protein_coding-intron (ENSMUSG00000039841.14, intron 1 of 6) -28891 ENSMUSG00000083107.1 ENSMUSG00000083107 ENSMUST00000117943 Gm5303 processed_pseudogene Interval_10916 chr1 176983126 176983623 + 0 NA intron (ENSMUSG00000026504.17, intron 17 of 18) protein_coding-intron (ENSMUSG00000026504.17, intron 16 of 17) 9138 ENSMUSG00000103251.1 ENSMUSG00000103251 ENSMUST00000191687 Gm37519 TEC Interval_106136 chr3 93554593 93556357 + 0 NA intron (ENSMUSG00000041959.14, intron 1 of 1) protein_coding-intron (ENSMUSG00000041959.14, intron 1 of 2) -5252 ENSMUSG00000041959.14 ENSMUSG00000041959 ENSMUST00000170612 S100a10 protein_coding Interval_12916 chr10 8114096 8115642 + 0 NA Intergenic Intergenic -61262 ENSMUSG00000112109.1 ENSMUSG00000112109 ENSMUST00000219578 Gm30906 lincRNA Interval_65 GL456212.1 124768 126517 + 0 NA NA NA NA NA Interval_111092 chr4 11950652 11951054 + 0 NA Intergenic Intergenic 1966 ENSMUSG00000080663.2 ENSMUSG00000080663 ENSMUST00000117013 Gm25002 miRNA Interval_139697 chr6 107237939 107238443 + 0 NA intron (ENSMUSG00000107714.1, intron 1 of 3) lincRNA-intron (ENSMUSG00000107714.1, intron 1 of 3) 38547 ENSMUSG00000107714.1 ENSMUSG00000107714 ENSMUST00000203245 Gm34933 lincRNA Interval_34740 chr12 9118528 9118976 + 0 NA Intergenic Intergenic 88725 ENSMUSG00000066637.2 ENSMUSG00000066637 ENSMUST00000219470 Ttc32 protein_coding Interval_23939 chr11 28611375 28613336 + 0 NA Intergenic Intergenic -69209 ENSMUSG00000084966.1 ENSMUSG00000084966 ENSMUST00000146554 2810471M01Rik lincRNA Interval_90745 chr2 32253855 32254258 + 0 NA TTS (ENSMUSG00000002550.16) protein_coding-TTS (ENSMUSG00000002550.16) 5393 ENSMUSG00000039254.16 ENSMUSG00000039254 ENSMUST00000151598 Pomt1 protein_coding Interval_32536 chr11 108239799 108241320 + 0 NA intron (ENSMUSG00000050965.14, intron 2 of 2) protein_coding-intron (ENSMUSG00000050965.14, intron 2 of 16) 58709 ENSMUSG00000084978.1 ENSMUSG00000084978 ENSMUST00000153899 Gm11655 antisense Interval_102706 chr3 30458092 30458617 + 0 NA intron (ENSMUSG00000027684.16, intron 2 of 8) protein_coding-intron (ENSMUSG00000027684.16, intron 1 of 11) -30072 ENSMUSG00000104079.1 ENSMUSG00000104079 ENSMUST00000192224 Gm37024 TEC Interval_163103 chr9 15288049 15288297 + 0 NA exon (ENSMUSG00000031938.15, exon 1 of 1) protein_coding-exon (ENSMUSG00000031938.15, exon 1 of 1) -8270 ENSMUSG00000031935.9 ENSMUSG00000031935 ENSMUST00000216406 Med17 protein_coding Interval_134261 chr6 24043228 24043785 + 0 NA Intergenic Intergenic 65065 ENSMUSG00000029700.11 ENSMUSG00000029700 ENSMUST00000176692 Slc13a1 protein_coding Interval_141057 chr6 124732050 124733524 + 0 NA promoter-TSS (ENSMUSG00000004266.15) protein_coding-promoter-TSS (ENSMUSG00000004266.15) 619 ENSMUSG00000092482.1 ENSMUSG00000092482 ENSMUST00000174861 Gm20531 antisense Interval_163783 chr9 25638078 25638762 + 0 NA Intergenic Intergenic 46943 ENSMUSG00000110857.1 ENSMUSG00000110857 ENSMUST00000215641 Gm48330 processed_pseudogene Interval_136990 chr6 65692674 65693125 + 0 NA intron (ENSMUSG00000049001.5, intron 1 of 3) protein_coding-intron (ENSMUSG00000049001.5, intron 1 of 3) -8531 ENSMUSG00000049001.5 ENSMUSG00000049001 ENSMUST00000169795 Ndnf protein_coding Interval_100204 chr2 167621406 167621763 + 0 NA intron (ENSMUSG00000089739.2, intron 5 of 7) protein_coding-intron (ENSMUSG00000078923.10, intron 1 of 2) 10403 ENSMUSG00000078923.10 ENSMUSG00000078923 ENSMUST00000144830 Ube2v1 protein_coding Interval_12898 chr10 7867025 7868328 + 0 NA exon (ENSMUSG00000039981.6, exon 6 of 6) protein_coding-exon (ENSMUSG00000039981.6, exon 6 of 6) -19195 ENSMUSG00000088857.1 ENSMUSG00000088857 ENSMUST00000158232 Gm24726 snoRNA Interval_131013 chr5 134551122 134552922 + 0 NA promoter-TSS (ENSMUSG00000107090.1) antisense-promoter-TSS (ENSMUSG00000107090.1) -35 ENSMUSG00000107090.1 ENSMUSG00000107090 ENSMUST00000200729 Gm42884 antisense Interval_106182 chr3 94387176 94387457 + 0 NA intron (ENSMUSG00000028150.14, intron 3 of 6) protein_coding-intron (ENSMUSG00000028150.14, intron 3 of 10) 9800 ENSMUSG00000028150.14 ENSMUSG00000028150 ENSMUST00000200009 Rorc protein_coding Interval_81693 chr18 63580350 63580561 + 0 NA Intergenic Intergenic -4281 ENSMUSG00000088656.1 ENSMUSG00000088656 ENSMUST00000158031 Gm24848 snRNA Interval_78921 chr18 21650833 21654094 + 0 NA promoter-TSS (ENSMUSG00000042514.11) protein_coding-promoter-TSS (ENSMUSG00000042514.11) 1015 ENSMUSG00000043168.12 ENSMUSG00000043168 ENSMUST00000139804 4930426D05Rik antisense Interval_157506 chr8 70963928 70964797 + 0 NA intron (ENSMUSG00000101854.2, intron 2 of 3) lincRNA-intron (ENSMUSG00000101854.2, intron 3 of 4) 32957 ENSMUSG00000074252.2 ENSMUSG00000074252 ENSMUST00000098653 Gm10654 TEC Interval_78658 chr18 16547995 16548862 + 0 NA Intergenic Intergenic -180305 ENSMUSG00000085575.1 ENSMUSG00000085575 ENSMUST00000149095 Gm15485 antisense Interval_166027 chr9 55556067 55557469 + 0 NA intron (ENSMUSG00000034007.10, intron 30 of 32) protein_coding-intron (ENSMUSG00000034007.10, intron 28 of 30) -1056 ENSMUSG00000064472.1 ENSMUSG00000064472 ENSMUST00000082538 Gm23407 snRNA Interval_160918 chr8 115035927 115036918 + 0 NA intron (ENSMUSG00000004637.15, intron 8 of 8) protein_coding-intron (ENSMUSG00000004637.15, intron 8 of 8) 16491 ENSMUSG00000088428.1 ENSMUSG00000088428 ENSMUST00000157803 Gm22556 rRNA Interval_2912 chr1 49571410 49572074 + 0 NA Intergenic Intergenic 7844 ENSMUSG00000099882.1 ENSMUSG00000099882 ENSMUST00000186262 Gm28388 processed_pseudogene Interval_168684 chr9 85841969 85844847 + 0 NA promoter-TSS (ENSMUSG00000056031.13) processed_transcript-promoter-TSS (ENSMUSG00000056031.13) 47 ENSMUSG00000035274.13 ENSMUSG00000035274 ENSMUST00000185559 Tpbg protein_coding Interval_15072 chr10 42340315 42340981 + 0 NA intron (ENSMUSG00000038302.14, intron 6 of 10) protein_coding-intron (ENSMUSG00000038302.14, intron 8 of 12) -9385 ENSMUSG00000081873.1 ENSMUSG00000081873 ENSMUST00000120526 Gm15197 processed_pseudogene Interval_90458 chr2 30594732 30595683 + 0 NA intron (ENSMUSG00000047363.4, intron 1 of 1) protein_coding-intron (ENSMUSG00000047363.4, intron 1 of 1) -10010 ENSMUSG00000047363.4 ENSMUSG00000047363 ENSMUST00000129719 Cstad protein_coding Interval_67834 chr16 57582987 57583436 + 0 NA intron (ENSMUSG00000022748.8, intron 1 of 1) protein_coding-intron (ENSMUSG00000022748.8, intron 1 of 9) 23653 ENSMUSG00000022748.8 ENSMUSG00000022748 ENSMUST00000232413 Cmss1 protein_coding Interval_9717 chr1 161247338 161249061 + 0 NA TTS (ENSMUSG00000026701.15) protein_coding-TTS (ENSMUSG00000026701.15) 2963 ENSMUSG00000026701.15 ENSMUSG00000026701 ENSMUST00000130867 Prdx6 protein_coding Interval_98810 chr2 155185887 155186935 + 0 NA intron (ENSMUSG00000027598.16, intron 11 of 15) protein_coding-intron (ENSMUSG00000027598.16, intron 11 of 24) 12849 ENSMUSG00000082596.1 ENSMUSG00000082596 ENSMUST00000119431 Gm14227 processed_pseudogene Interval_30315 chr11 93520407 93520603 + 0 NA intron (ENSMUSG00000056158.14, intron 4 of 8) protein_coding-intron (ENSMUSG00000056158.14, intron 5 of 9) -107181 ENSMUSG00000064743.1 ENSMUSG00000064743 ENSMUST00000082809 Gm24856 snRNA Interval_19199 chr10 95455814 95456682 + 0 NA intron (ENSMUSG00000112261.1, intron 2 of 2) lincRNA-intron (ENSMUSG00000112261.1, intron 2 of 2) -1282 ENSMUSG00000112725.1 ENSMUSG00000112725 ENSMUST00000220014 Gm47600 processed_pseudogene Interval_27972 chr11 71749824 71751951 + 0 NA promoter-TSS (ENSMUSG00000020811.16) protein_coding-promoter-TSS (ENSMUSG00000020811.16) 967 ENSMUSG00000020811.16 ENSMUSG00000020811 ENSMUST00000132095 Wscd1 protein_coding Interval_19113 chr10 94688001 94689376 + 0 NA promoter-TSS (ENSMUSG00000020024.7) protein_coding-promoter-TSS (ENSMUSG00000020024.7) -30 ENSMUSG00000020024.7 ENSMUSG00000020024 ENSMUST00000218076 Cep83 protein_coding Interval_60845 chr15 77113244 77114494 + 0 NA exon (ENSMUSG00000116298.1, exon 1 of 1) TEC-exon (ENSMUSG00000116298.1, exon 1 of 1) 1933 ENSMUSG00000116298.1 ENSMUSG00000116298 ENSMUST00000230697 4833412C15Rik TEC Interval_8441 chr1 139421691 139423106 + 0 NA promoter-TSS (ENSMUSG00000033964.12) protein_coding-promoter-TSS (ENSMUSG00000033964.12) 110 ENSMUSG00000033964.12 ENSMUSG00000033964 ENSMUST00000199011 Zbtb41 protein_coding Interval_136111 chr6 51122936 51123129 + 0 NA Intergenic Intergenic 146878 ENSMUSG00000065505.1 ENSMUSG00000065505 ENSMUST00000083571 Mir148a miRNA Interval_112998 chr4 46696224 46697372 + 0 NA intron (ENSMUSG00000039809.10, intron 13 of 18) protein_coding-intron (ENSMUSG00000039809.10, intron 13 of 18) -46589 ENSMUSG00000039813.14 ENSMUSG00000039813 ENSMUST00000107750 Tbc1d2 protein_coding Interval_52803 chr14 50771371 50772783 + 0 NA TTS (ENSMUSG00000006288.8) protein_coding-TTS (ENSMUSG00000006288.8) 2829 ENSMUSG00000078125.2 ENSMUSG00000078125 ENSMUST00000080330 Gm10916 processed_pseudogene Interval_54069 chr14 64977533 64977775 + 0 NA intron (ENSMUSG00000021975.9, intron 1 of 16) protein_coding-intron (ENSMUSG00000021975.9, intron 1 of 16) 27609 ENSMUSG00000021975.9 ENSMUSG00000021975 ENSMUST00000225790 Ints9 protein_coding Interval_51175 chr14 24472035 24472422 + 0 NA intron (ENSMUSG00000025280.8, intron 5 of 5) protein_coding-intron (ENSMUSG00000025280.8, intron 11 of 30) 7197 ENSMUSG00000025280.8 ENSMUSG00000025280 ENSMUST00000225014 Polr3a protein_coding Interval_1161 chr1 16433236 16433743 + 0 NA intron (ENSMUSG00000025920.19, intron 4 of 11) protein_coding-intron (ENSMUSG00000025920.19, intron 4 of 12) 85817 ENSMUSG00000025920.19 ENSMUSG00000025920 ENSMUST00000144138 Stau2 protein_coding Interval_64239 chr16 9639779 9640225 + 0 NA intron (ENSMUSG00000059003.12, intron 11 of 13) protein_coding-intron (ENSMUSG00000059003.12, intron 9 of 11) 354921 ENSMUSG00000059003.12 ENSMUSG00000059003 ENSMUST00000197242 Grin2a protein_coding Interval_171918 chr9 122559559 122560089 + 0 NA Intergenic Intergenic -12678 ENSMUSG00000097736.8 ENSMUSG00000097736 ENSMUST00000181719 9530059O14Rik lincRNA Interval_56324 chr14 117364840 117365154 + 0 NA intron (ENSMUSG00000058571.11, intron 2 of 9) protein_coding-intron (ENSMUSG00000058571.11, intron 2 of 8) 439466 ENSMUSG00000058571.11 ENSMUSG00000058571 ENSMUST00000078849 Gpc6 protein_coding Interval_19007 chr10 93756167 93756568 + 0 NA Intergenic Intergenic -22293 ENSMUSG00000090610.3 ENSMUSG00000090610 ENSMUST00000170703 Gm3571 processed_pseudogene Interval_104667 chr3 69260449 69261745 + 0 NA Intergenic Intergenic 38678 ENSMUSG00000098207.1 ENSMUSG00000098207 ENSMUST00000183126 Arl14 protein_coding Interval_32591 chr11 108943188 108944416 + 0 NA exon (ENSMUSG00000000142.15, exon 8 of 11) protein_coding-exon (ENSMUSG00000000142.15, exon 8 of 11) -1787 ENSMUSG00000086268.1 ENSMUSG00000086268 ENSMUST00000143435 Gm11670 antisense Interval_57147 chr15 6953268 6954578 + 0 NA Intergenic Intergenic -42114 ENSMUSG00000104334.1 ENSMUSG00000104334 ENSMUST00000192751 Gm38282 TEC Interval_143596 chr7 13033816 13035300 + 0 NA promoter-TSS (ENSMUSG00000033916.5) protein_coding-promoter-TSS (ENSMUSG00000033916.5) 181 ENSMUSG00000033916.5 ENSMUSG00000033916 ENSMUST00000211369 Chmp2a protein_coding Interval_108733 chr3 130789125 130789978 + 0 NA Intergenic Intergenic 30286 ENSMUSG00000105716.1 ENSMUSG00000105716 ENSMUST00000196697 Gm43522 lincRNA Interval_138006 chr6 84105384 84107246 + 0 NA promoter-TSS (ENSMUSG00000033788.15) protein_coding-promoter-TSS (ENSMUSG00000033788.15) 692 ENSMUSG00000087001.2 ENSMUSG00000087001 ENSMUST00000137673 Gm15475 antisense Interval_39044 chr12 84640293 84643062 + 0 NA promoter-TSS (ENSMUSG00000071235.12) protein_coding-promoter-TSS (ENSMUSG00000071235.12) -878 ENSMUSG00000071235.12 ENSMUSG00000071235 ENSMUST00000095551 Vrtn protein_coding Interval_39116 chr12 85189567 85190765 + 0 NA Intergenic Intergenic -2361 ENSMUSG00000113681.1 ENSMUSG00000113681 ENSMUST00000221330 Gm45930 processed_pseudogene Interval_63337 chr15 100422479 100423623 + 0 NA promoter-TSS (ENSMUSG00000023030.16) protein_coding-promoter-TSS (ENSMUSG00000023030.16) -142 ENSMUSG00000087444.1 ENSMUSG00000087444 ENSMUST00000148928 Gm5475 protein_coding Interval_138969 chr6 93892641 93893661 + 0 NA intron (ENSMUSG00000045095.16, intron 2 of 24) protein_coding-intron (ENSMUSG00000045095.16, intron 2 of 21) 2536 ENSMUSG00000089069.1 ENSMUSG00000089069 ENSMUST00000158444 Gm22840 snoRNA Interval_51864 chr14 33143538 33144606 + 0 NA intron (ENSMUSG00000051506.17, intron 9 of 61) protein_coding-intron (ENSMUSG00000051506.17, intron 9 of 58) 41436 ENSMUSG00000051506.17 ENSMUSG00000051506 ENSMUST00000159606 Wdfy4 protein_coding Interval_55280 chr14 80055193 80057494 + 0 NA Intergenic Intergenic 56092 ENSMUSG00000022026.7 ENSMUSG00000022026 ENSMUST00000088735 Olfm4 protein_coding Interval_65132 chr16 20072653 20073291 + 0 NA Intergenic Intergenic -24613 ENSMUSG00000062901.3 ENSMUSG00000062901 ENSMUST00000231842 Klhl24 protein_coding Interval_121026 chr4 152296795 152297916 + 0 NA promoter-TSS (ENSMUSG00000039662.16) protein_coding-promoter-TSS (ENSMUSG00000039662.16) 51 ENSMUSG00000039662.16 ENSMUSG00000039662 ENSMUST00000134242 Icmt protein_coding Interval_160536 chr8 110489496 110489904 + 0 NA intron (ENSMUSG00000059854.8, intron 26 of 86) protein_coding-intron (ENSMUSG00000059854.8, intron 26 of 86) -9152 ENSMUSG00000093112.2 ENSMUSG00000093112 ENSMUST00000175371 Gm22701 misc_RNA Interval_64456 chr16 11525991 11527176 + 0 NA intron (ENSMUSG00000071669.14, intron 14 of 20) protein_coding-intron (ENSMUSG00000071669.14, intron 7 of 13) -30277 ENSMUSG00000082653.1 ENSMUSG00000082653 ENSMUST00000117770 Gm15897 processed_pseudogene Interval_104313 chr3 63260901 63261127 + 0 NA intron (ENSMUSG00000027820.12, intron 1 of 5) protein_coding-intron (ENSMUSG00000027820.12, intron 1 of 5) -34252 ENSMUSG00000027820.12 ENSMUSG00000027820 ENSMUST00000193805 Mme protein_coding Interval_70132 chr17 5659725 5661718 + 0 NA intron (ENSMUSG00000034265.8, intron 2 of 8) protein_coding-intron (ENSMUSG00000034265.8, intron 2 of 8) -138770 ENSMUSG00000096965.7 ENSMUSG00000096965 ENSMUST00000181392 3300005D01Rik lincRNA Interval_7318 chr1 128854890 128855602 + 0 NA Intergenic Intergenic 30773 ENSMUSG00000064737.1 ENSMUSG00000064737 ENSMUST00000082803 Gm23056 snRNA Interval_150910 chr7 116293992 116295370 + 0 NA intron (ENSMUSG00000045659.18, intron 3 of 18) protein_coding-intron (ENSMUSG00000045659.18, intron 3 of 26) -11938 ENSMUSG00000108650.1 ENSMUSG00000108650 ENSMUST00000205675 Gm44867 sense_intronic Interval_104555 chr3 68013085 68013655 + 0 NA intron (ENSMUSG00000102422.1, intron 1 of 10) protein_coding-intron (ENSMUSG00000051777.6, intron 1 of 3) 121138 ENSMUSG00000102422.1 ENSMUSG00000102422 ENSMUST00000182006 Iqschfp protein_coding Interval_90602 chr2 31398511 31398775 + 0 NA intron (ENSMUSG00000055632.18, intron 43 of 97) protein_coding-intron (ENSMUSG00000055632.18, intron 43 of 97) 84228 ENSMUSG00000055632.18 ENSMUSG00000055632 ENSMUST00000141294 Hmcn2 protein_coding Interval_90790 chr2 32619370 32619696 + 0 NA TTS (ENSMUSG00000026811.18) protein_coding-TTS (ENSMUSG00000026811.18) -5905 ENSMUSG00000026817.14 ENSMUSG00000026817 ENSMUST00000135392 Ak1 protein_coding Interval_67796 chr16 57259885 57260353 + 0 NA Intergenic Intergenic 5686 ENSMUSG00000116675.1 ENSMUSG00000116675 ENSMUST00000231600 Gm49581 processed_pseudogene Interval_10752 chr1 174250632 174251040 + 0 NA exon (ENSMUSG00000050788.5, exon 1 of 1) protein_coding-exon (ENSMUSG00000050788.5, exon 1 of 1) 1225 ENSMUSG00000050788.5 ENSMUSG00000050788 ENSMUST00000061990 Olfr419 protein_coding Interval_172286 chrX 12345094 12345582 + 0 NA promoter-TSS (ENSMUSG00000087591.7) lincRNA-promoter-TSS (ENSMUSG00000087591.7) 9658 ENSMUSG00000087591.7 ENSMUSG00000087591 ENSMUST00000137281 Gm14635 lincRNA Interval_111123 chr4 12418890 12420216 + 0 NA Intergenic Intergenic 148154 ENSMUSG00000085909.1 ENSMUSG00000085909 ENSMUST00000155156 Gm11846 lincRNA Interval_10876 chr1 176570104 176570303 + 0 NA Intergenic Intergenic -42930 ENSMUSG00000104021.1 ENSMUSG00000104021 ENSMUST00000194241 Gm36536 lincRNA Interval_138708 chr6 91321269 91321649 + 0 NA Intergenic Intergenic 43638 ENSMUSG00000030093.7 ENSMUSG00000030093 ENSMUST00000132936 Wnt7a protein_coding Interval_16995 chr10 70328235 70328518 + 0 NA Intergenic Intergenic -9926 ENSMUSG00000112676.1 ENSMUSG00000112676 ENSMUST00000219977 Gm20108 processed_pseudogene Interval_98031 chr2 146920771 146921419 + 0 NA intron (ENSMUSG00000074749.10, intron 6 of 13) protein_coding-intron (ENSMUSG00000074749.10, intron 6 of 13) 65186 ENSMUSG00000074749.10 ENSMUSG00000074749 ENSMUST00000135595 Kiz protein_coding Interval_89892 chr2 26273526 26274033 + 0 NA intron (ENSMUSG00000048038.8, intron 10 of 26) protein_coding-intron (ENSMUSG00000048038.8, intron 9 of 9) 20659 ENSMUSG00000048038.8 ENSMUSG00000048038 ENSMUST00000057224 Ccdc187 protein_coding Interval_24823 chr11 39794049 39794668 + 0 NA Intergenic Intergenic -36298 ENSMUSG00000088603.1 ENSMUSG00000088603 ENSMUST00000157978 Gm24192 snRNA Interval_84293 chr19 9898906 9899990 + 0 NA promoter-TSS (ENSMUSG00000118100.1) processed_transcript-promoter-TSS (ENSMUSG00000118100.1) 13 ENSMUSG00000024660.9 ENSMUSG00000024660 ENSMUST00000237147 Incenp protein_coding Interval_57095 chr15 6237183 6239330 + 0 NA Intergenic Intergenic 71657 ENSMUSG00000089771.1 ENSMUSG00000089771 ENSMUST00000161939 Gm16311 antisense Interval_72463 chr17 29975628 29976781 + 0 NA Intergenic Intergenic -3116 ENSMUSG00000117528.1 ENSMUSG00000117528 ENSMUST00000234695 Gm50017 lincRNA Interval_36153 chr12 36600521 36600828 + 0 NA intron (ENSMUSG00000043153.6, intron 8 of 8) protein_coding-intron (ENSMUSG00000043153.6, intron 9 of 9) 61317 ENSMUSG00000114135.1 ENSMUSG00000114135 ENSMUST00000223284 Gm7252 processed_pseudogene Interval_115515 chr4 99621768 99622292 + 0 NA Intergenic Intergenic -5508 ENSMUSG00000083698.1 ENSMUSG00000083698 ENSMUST00000119752 Gm12687 processed_pseudogene Interval_10659 chr1 172512972 172514127 + 0 NA exon (ENSMUSG00000104351.1, exon 1 of 1) TEC-exon (ENSMUSG00000104351.1, exon 1 of 1) 300 ENSMUSG00000104351.1 ENSMUSG00000104351 ENSMUST00000195877 Gm37125 TEC Interval_124545 chr5 50253883 50254144 + 0 NA intron (ENSMUSG00000105020.1, intron 1 of 4) unprocessed_pseudogene-intron (ENSMUSG00000105020.1, intron 1 of 4) 1251 ENSMUSG00000099124.1 ENSMUSG00000099124 ENSMUST00000184773 Mir8117 miRNA Interval_146814 chr7 52123128 52123500 + 0 NA Intergenic Intergenic -47735 ENSMUSG00000088722.1 ENSMUSG00000088722 ENSMUST00000158097 Gm22211 snRNA Interval_3705 chr1 61376631 61377315 + 0 NA Intergenic Intergenic -1459 ENSMUSG00000085447.1 ENSMUSG00000085447 ENSMUST00000141000 9530026F06Rik lincRNA Interval_143912 chr7 17150175 17150470 + 0 NA promoter-TSS (ENSMUSG00000053228.12) protein_coding-promoter-TSS (ENSMUSG00000053228.12) 40 ENSMUSG00000053228.12 ENSMUSG00000053228 ENSMUST00000108491 Ceacam3 protein_coding Interval_33501 chr11 116901332 116901899 + 0 NA Intergenic Intergenic -45720 ENSMUSG00000043857.16 ENSMUSG00000043857 ENSMUST00000126757 Mgat5b protein_coding Interval_32683 chr11 109620913 109621688 + 0 NA intron (ENSMUSG00000086733.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000086733.1, intron 1 of 1) 4980 ENSMUSG00000086733.1 ENSMUSG00000086733 ENSMUST00000141559 Gm11685 lincRNA Interval_129906 chr5 123022256 123022531 + 0 NA intron (ENSMUSG00000049686.14, intron 1 of 1) protein_coding-intron (ENSMUSG00000049686.14, intron 1 of 2) 7055 ENSMUSG00000049686.14 ENSMUSG00000049686 ENSMUST00000152213 Orai1 protein_coding Interval_50217 chr14 10343310 10343745 + 0 NA intron (ENSMUSG00000060579.13, intron 1 of 5) protein_coding-intron (ENSMUSG00000060579.13, intron 5 of 9) 36421 ENSMUSG00000114749.1 ENSMUSG00000114749 ENSMUST00000223594 Gm48442 TEC Interval_35193 chr12 17941330 17941662 + 0 NA intron (ENSMUSG00000113642.1, intron 1 of 1) transcribed_unprocessed_pseudogene-intron (ENSMUSG00000113642.1, intron 1 of 1) 8332 ENSMUSG00000113536.1 ENSMUSG00000113536 ENSMUST00000221062 Gm49327 transcribed_unprocessed_pseudogene Interval_78107 chr18 8215557 8216475 + 0 NA Intergenic Intergenic 11990 ENSMUSG00000117385.1 ENSMUSG00000117385 ENSMUST00000234783 Gm20147 processed_pseudogene Interval_35680 chr12 27408312 27408890 + 0 NA Intergenic Intergenic -66027 ENSMUSG00000063632.6 ENSMUSG00000063632 ENSMUST00000079063 Sox11 protein_coding Interval_92454 chr2 59805941 59806295 + 0 NA promoter-TSS (ENSMUSG00000035168.16) protein_coding-promoter-TSS (ENSMUSG00000035168.16) 50 ENSMUSG00000035168.16 ENSMUSG00000035168 ENSMUST00000147650 Tanc1 protein_coding Interval_517 chr1 6903770 6903949 + 0 NA Intergenic Intergenic -6701 ENSMUSG00000104385.1 ENSMUSG00000104385 ENSMUST00000194393 Gm7449 processed_pseudogene Interval_82153 chr18 68095028 68096465 + 0 NA intron (ENSMUSG00000024544.9, intron 2 of 5) protein_coding-intron (ENSMUSG00000024544.9, intron 2 of 5) 22628 ENSMUSG00000117891.1 ENSMUSG00000117891 ENSMUST00000236198 Gm41764 antisense Interval_24030 chr11 29641913 29642777 + 0 NA intron (ENSMUSG00000084850.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000084850.1, intron 1 of 2) 3164 ENSMUSG00000084850.1 ENSMUSG00000084850 ENSMUST00000125194 Gm12092 lincRNA Interval_14468 chr10 34148732 34149516 + 0 NA Intergenic Intergenic -21140 ENSMUSG00000046031.7 ENSMUSG00000046031 ENSMUST00000062784 Calhm6 protein_coding Interval_7320 chr1 128872923 128873541 + 0 NA Intergenic Intergenic 12787 ENSMUSG00000064737.1 ENSMUSG00000064737 ENSMUST00000082803 Gm23056 snRNA Interval_120480 chr4 148878881 148879451 + 0 NA intron (ENSMUSG00000028977.17, intron 2 of 20) protein_coding-intron (ENSMUSG00000028977.17, intron 2 of 15) 35158 ENSMUSG00000086766.1 ENSMUSG00000086766 ENSMUST00000151967 Gm15969 antisense Interval_36633 chr12 51665846 51666181 + 0 NA intron (ENSMUSG00000020954.16, intron 1 of 15) protein_coding-intron (ENSMUSG00000020954.16, intron 1 of 17) -22215 ENSMUSG00000020954.16 ENSMUSG00000020954 ENSMUST00000218212 Strn3 protein_coding Interval_117577 chr4 124795079 124795304 + 0 NA promoter-TSS (ENSMUSG00000028894.18) protein_coding-promoter-TSS (ENSMUSG00000028894.18) -7487 ENSMUSG00000028890.13 ENSMUSG00000028890 ENSMUST00000175875 Mtf1 protein_coding Interval_124080 chr5 38124487 38125450 + 0 NA intron (ENSMUSG00000029125.14, intron 6 of 9) protein_coding-intron (ENSMUSG00000029125.14, intron 7 of 10) 11129 ENSMUSG00000107276.1 ENSMUSG00000107276 ENSMUST00000202512 Gm42858 TEC Interval_136694 chr6 57858731 57859942 + 0 NA TTS (ENSMUSG00000077717.1) snoRNA-TTS (ENSMUSG00000077717.1) 612 ENSMUSG00000077717.1 ENSMUSG00000077717 ENSMUST00000104529 Gm25726 snoRNA Interval_112266 chr4 39397296 39398500 + 0 NA TTS (ENSMUSG00000090839.1) antisense-TTS (ENSMUSG00000090839.1) 52351 ENSMUSG00000090839.1 ENSMUSG00000090839 ENSMUST00000169881 Gm17094 antisense Interval_91377 chr2 38378464 38379629 + 0 NA Intergenic Intergenic -15066 ENSMUSG00000087539.1 ENSMUSG00000087539 ENSMUST00000137134 Gm13584 antisense Interval_89843 chr2 25923547 25924442 + 0 NA Intergenic Intergenic 59288 ENSMUSG00000026933.17 ENSMUSG00000026933 ENSMUST00000127823 Camsap1 protein_coding Interval_85853 chr19 32387452 32389884 + 0 NA promoter-TSS (ENSMUSG00000040451.18) protein_coding-promoter-TSS (ENSMUSG00000040451.18) -548 ENSMUSG00000097787.2 ENSMUSG00000097787 ENSMUST00000181612 2700046G09Rik bidirectional_promoter_lncRNA Interval_121081 chr4 152723556 152724098 + 0 NA Intergenic Intergenic 26287 ENSMUSG00000073699.3 ENSMUSG00000073699 ENSMUST00000143133 Gm833 lincRNA Interval_77233 chr17 87501412 87502218 + 0 NA intron (ENSMUSG00000100847.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000100847.1, intron 1 of 1) 11067 ENSMUSG00000100847.1 ENSMUSG00000100847 ENSMUST00000188990 Gm28676 lincRNA Interval_153117 chr7 141451871 141452376 + 0 NA TTS (ENSMUSG00000025508.13) protein_coding-TTS (ENSMUSG00000025508.13) 3320 ENSMUSG00000064666.1 ENSMUSG00000064666 ENSMUST00000082732 Snora52 snoRNA Interval_155633 chr8 35413809 35414312 + 0 NA Intergenic Intergenic -4554 ENSMUSG00000110384.1 ENSMUSG00000110384 ENSMUST00000211359 Gm45301 lincRNA Interval_112234 chr4 37254792 37256881 + 0 NA intron (ENSMUSG00000086026.1, intron 1 of 7) lincRNA-intron (ENSMUSG00000086026.1, intron 1 of 7) 6433 ENSMUSG00000086026.1 ENSMUSG00000086026 ENSMUST00000147108 Gm12374 lincRNA Interval_115441 chr4 98957204 98957675 + 0 NA intron (ENSMUSG00000028556.15, intron 1 of 4) protein_coding-intron (ENSMUSG00000028556.15, intron 41 of 48) 33475 ENSMUSG00000028560.11 ENSMUSG00000028560 ENSMUST00000125104 Usp1 protein_coding Interval_165268 chr9 45935617 45937348 + 0 NA promoter-TSS (ENSMUSG00000032085.5) protein_coding-promoter-TSS (ENSMUSG00000032085.5) -609 ENSMUSG00000032085.5 ENSMUSG00000032085 ENSMUST00000215509 Tagln protein_coding Interval_147021 chr7 58577742 58578397 + 0 NA Intergenic Intergenic 23149 ENSMUSG00000108877.1 ENSMUSG00000108877 ENSMUST00000208729 Gm45157 processed_pseudogene Interval_43730 chr13 35828657 35828951 + 0 NA intron (ENSMUSG00000059288.14, intron 2 of 6) protein_coding-intron (ENSMUSG00000059288.14, intron 5 of 9) 30054 ENSMUSG00000114555.1 ENSMUSG00000114555 ENSMUST00000224988 Gm48706 TEC Interval_33099 chr11 114423369 114423708 + 0 NA exon (ENSMUSG00000062391.3, exon 1 of 2) lincRNA-exon (ENSMUSG00000062391.3, exon 1 of 2) 25322 ENSMUSG00000062391.3 ENSMUSG00000062391 ENSMUST00000141088 4932435O22Rik lincRNA Interval_100231 chr2 167811661 167811995 + 0 NA Intergenic Intergenic 21818 ENSMUSG00000087684.1 ENSMUSG00000087684 ENSMUST00000143649 1200007C13Rik lincRNA Interval_119216 chr4 136264749 136265291 + 0 NA TTS (ENSMUSG00000001604.14) protein_coding-TTS (ENSMUSG00000001604.14) 17047 ENSMUSG00000001604.14 ENSMUSG00000001604 ENSMUST00000143942 Tcea3 protein_coding Interval_67271 chr16 45196594 45197430 + 0 NA Intergenic Intergenic -8088 ENSMUSG00000062284.5 ENSMUSG00000062284 ENSMUST00000078768 Gm6030 processed_pseudogene Interval_82448 chr18 74070336 74070575 + 0 NA Intergenic Intergenic 5353 ENSMUSG00000053861.1 ENSMUSG00000053861 ENSMUST00000066583 Gm9925 protein_coding Interval_88746 chr2 10250539 10251734 + 0 NA intron (ENSMUSG00000025780.7, intron 13 of 13) protein_coding-intron (ENSMUSG00000025780.7, intron 13 of 13) 97565 ENSMUSG00000025780.7 ENSMUSG00000025780 ENSMUST00000026886 Itih5 protein_coding Interval_102008 chr3 14907161 14907914 + 0 NA Intergenic Intergenic 20898 ENSMUSG00000027562.12 ENSMUSG00000027562 ENSMUST00000195520 Car2 protein_coding Interval_61004 chr15 78683491 78684776 + 0 NA intron (ENSMUSG00000043460.7, intron 1 of 1) protein_coding-intron (ENSMUSG00000043460.7, intron 1 of 1) -8907 ENSMUSG00000043460.7 ENSMUSG00000043460 ENSMUST00000229550 Elfn2 protein_coding Interval_92728 chr2 64457966 64458599 + 0 NA Intergenic Intergenic 16667 ENSMUSG00000082127.2 ENSMUSG00000082127 ENSMUST00000121365 Gm13577 processed_pseudogene Interval_64537 chr16 13147666 13148476 + 0 NA exon (ENSMUSG00000022545.13, exon 11 of 11) protein_coding-exon (ENSMUSG00000022545.13, exon 11 of 11) 15680 ENSMUSG00000022545.13 ENSMUSG00000022545 ENSMUST00000156393 Ercc4 protein_coding Interval_4937 chr1 82810624 82810858 + 0 NA Intergenic Intergenic -3273 ENSMUSG00000102280.1 ENSMUSG00000102280 ENSMUST00000192756 Gm36999 TEC Interval_107645 chr3 109311300 109311901 + 0 NA Intergenic Intergenic -118733 ENSMUSG00000083717.1 ENSMUSG00000083717 ENSMUST00000120957 Gm13865 processed_pseudogene Interval_156945 chr8 62092685 62093092 + 0 NA intron (ENSMUSG00000031635.14, intron 2 of 7) protein_coding-intron (ENSMUSG00000031635.14, intron 2 of 11) 30262 ENSMUSG00000031635.14 ENSMUSG00000031635 ENSMUST00000210799 Anxa10 protein_coding Interval_55257 chr14 79716389 79716910 + 0 NA Intergenic Intergenic 12937 ENSMUSG00000115422.1 ENSMUSG00000115422 ENSMUST00000227328 4930452G13Rik lincRNA Interval_149935 chr7 102851334 102851614 + 0 NA Intergenic Intergenic 7281 ENSMUSG00000060888.4 ENSMUSG00000060888 ENSMUST00000209952 Olfr566 protein_coding Interval_103385 chr3 41082443 41083924 + 0 NA promoter-TSS (ENSMUSG00000049940.7) protein_coding-promoter-TSS (ENSMUSG00000049940.7) -12513 ENSMUSG00000049940.7 ENSMUSG00000049940 ENSMUST00000124636 Pgrmc2 protein_coding Interval_67756 chr16 56885797 56886679 + 0 NA promoter-TSS (ENSMUSG00000022754.6) protein_coding-promoter-TSS (ENSMUSG00000022754.6) -340 ENSMUSG00000084999.2 ENSMUSG00000084999 ENSMUST00000211219 Gm15839 antisense Interval_85863 chr19 32501344 32502126 + 0 NA intron (ENSMUSG00000024896.9, intron 4 of 4) protein_coding-intron (ENSMUSG00000024896.9, intron 4 of 4) 15812 ENSMUSG00000024896.9 ENSMUSG00000024896 ENSMUST00000236287 Minpp1 protein_coding Interval_125774 chr5 74050708 74051869 + 0 NA exon (ENSMUSG00000106993.1, exon 1 of 1) TEC-exon (ENSMUSG00000106993.1, exon 1 of 1) 2217 ENSMUSG00000106993.1 ENSMUSG00000106993 ENSMUST00000201586 Gm43417 TEC Interval_110817 chr4 8710045 8710375 + 0 NA promoter-TSS (ENSMUSG00000041235.12) protein_coding-promoter-TSS (ENSMUSG00000041235.12) -36628 ENSMUSG00000082122.1 ENSMUSG00000082122 ENSMUST00000120923 Gm11809 processed_pseudogene Interval_159197 chr8 91576882 91577074 + 0 NA intron (ENSMUSG00000055932.15, intron 5 of 5) protein_coding-intron (ENSMUSG00000055932.15, intron 8 of 8) -2310 ENSMUSG00000110068.1 ENSMUSG00000110068 ENSMUST00000210685 Gm45294 TEC Interval_16051 chr10 60346373 60347468 + 0 NA promoter-TSS (ENSMUSG00000020101.14) protein_coding-promoter-TSS (ENSMUSG00000020101.14) -92 ENSMUSG00000020101.14 ENSMUSG00000020101 ENSMUST00000105459 Vsir protein_coding Interval_126164 chr5 80775306 80775862 + 0 NA Intergenic Intergenic -118070 ENSMUSG00000065235.1 ENSMUSG00000065235 ENSMUST00000083301 Gm22974 snRNA Interval_148229 chr7 79991037 79991509 + 0 NA Intergenic Intergenic -36541 ENSMUSG00000048897.15 ENSMUSG00000048897 ENSMUST00000206104 Zfp710 protein_coding Interval_37033 chr12 56611680 56615086 + 0 NA promoter-TSS (ENSMUSG00000058669.7) protein_coding-promoter-TSS (ENSMUSG00000058669.7) -99 ENSMUSG00000058669.7 ENSMUSG00000058669 ENSMUST00000072631 Nkx2-9 protein_coding Interval_108529 chr3 128036136 128036370 + 0 NA Intergenic Intergenic -2440 ENSMUSG00000074237.3 ENSMUSG00000074237 ENSMUST00000098625 Gm10650 TEC Interval_16579 chr10 64209331 64209855 + 0 NA intron (ENSMUSG00000060843.11, intron 7 of 17) protein_coding-intron (ENSMUSG00000060843.11, intron 6 of 16) 95151 ENSMUSG00000089003.1 ENSMUSG00000089003 ENSMUST00000158378 Gm23854 snRNA Interval_64739 chr16 14677873 14678741 + 0 NA Intergenic Intergenic -27545 ENSMUSG00000022676.7 ENSMUSG00000022676 ENSMUST00000023356 Snai2 protein_coding Interval_20057 chr10 112879356 112879583 + 0 NA Intergenic Intergenic 41717 ENSMUSG00000112722.1 ENSMUSG00000112722 ENSMUST00000218495 Gm3942 lincRNA Interval_146313 chr7 45297368 45297739 + 0 NA Intergenic Intergenic 20040 ENSMUSG00000070568.12 ENSMUSG00000070568 ENSMUST00000210733 Slc6a21 protein_coding Interval_123616 chr5 33831028 33831251 + 0 NA intron (ENSMUSG00000057406.16, intron 2 of 9) protein_coding-intron (ENSMUSG00000057406.16, intron 2 of 22) -47076 ENSMUSG00000057406.16 ENSMUSG00000057406 ENSMUST00000201572 Nsd2 protein_coding Interval_135751 chr6 46861365 46861718 + 0 NA intron (ENSMUSG00000039419.17, intron 15 of 23) protein_coding-intron (ENSMUSG00000039419.17, intron 15 of 23) 75588 ENSMUSG00000108217.1 ENSMUSG00000108217 ENSMUST00000204002 Gm43883 TEC Interval_122053 chr5 14806940 14807635 + 0 NA TTS (ENSMUSG00000104672.1) TEC-TTS (ENSMUSG00000104672.1) 2386 ENSMUSG00000104672.1 ENSMUSG00000104672 ENSMUST00000198672 Gm43665 TEC Interval_137773 chr6 82283666 82284258 + 0 NA Intergenic Intergenic 39021 ENSMUSG00000107809.1 ENSMUSG00000107809 ENSMUST00000204556 Gm44209 TEC Interval_131139 chr5 135373879 135374108 + 0 NA promoter-TSS (ENSMUSG00000000916.15) protein_coding-promoter-TSS (ENSMUSG00000000916.15) 3416 ENSMUSG00000000916.15 ENSMUSG00000000916 ENSMUST00000124453 Nsun5 protein_coding Interval_133444 chr6 5099171 5099940 + 0 NA intron (ENSMUSG00000032827.15, intron 7 of 19) protein_coding-intron (ENSMUSG00000032827.15, intron 6 of 15) 94229 ENSMUSG00000002588.13 ENSMUSG00000002588 ENSMUST00000176933 Pon1 protein_coding Interval_160609 chr8 111031737 111032033 + 0 NA promoter-TSS (ENSMUSG00000033658.16) protein_coding-promoter-TSS (ENSMUSG00000033658.16) -134 ENSMUSG00000033658.16 ENSMUSG00000033658 ENSMUST00000065784 Ddx19b protein_coding Interval_68695 chr16 84793280 84795522 + 0 NA intron (ENSMUSG00000053062.16, intron 1 of 9) protein_coding-intron (ENSMUSG00000053062.16, intron 1 of 3) 843 ENSMUSG00000053062.16 ENSMUSG00000053062 ENSMUST00000138054 Jam2 protein_coding Interval_4944 chr1 82852752 82853104 + 0 NA intron (ENSMUSG00000026159.13, intron 1 of 5) protein_coding-intron (ENSMUSG00000026159.13, intron 1 of 12) 13259 ENSMUSG00000026159.13 ENSMUSG00000026159 ENSMUST00000186043 Agfg1 protein_coding Interval_96905 chr2 129379039 129380370 + 0 NA promoter-TSS (ENSMUSG00000081888.1) unprocessed_pseudogene-promoter-TSS (ENSMUSG00000081888.1) -308 ENSMUSG00000081888.1 ENSMUSG00000081888 ENSMUST00000122326 Spcs2-ps unprocessed_pseudogene Interval_119115 chr4 135634648 135634849 + 0 NA Intergenic Intergenic 7930 ENSMUSG00000086788.2 ENSMUSG00000086788 ENSMUST00000148529 1700029M20Rik lincRNA Interval_97268 chr2 132781166 132782080 + 0 NA exon (ENSMUSG00000027350.8, exon 1 of 5) protein_coding-exon (ENSMUSG00000027350.8, exon 1 of 5) 345 ENSMUSG00000027350.8 ENSMUSG00000027350 ENSMUST00000028826 Chgb protein_coding Interval_109129 chr3 136114920 136116256 + 0 NA intron (ENSMUSG00000037922.13, intron 6 of 15) protein_coding-intron (ENSMUSG00000037922.13, intron 7 of 16) -59485 ENSMUSG00000037922.13 ENSMUSG00000037922 ENSMUST00000198034 Bank1 protein_coding Interval_108667 chr3 129934466 129935221 + 0 NA intron (ENSMUSG00000027994.14, intron 1 of 6) protein_coding-intron (ENSMUSG00000027994.14, intron 1 of 7) 33342 ENSMUSG00000027997.9 ENSMUSG00000027997 ENSMUST00000152622 Casp6 protein_coding Interval_148904 chr7 89951260 89951491 + 0 NA Intergenic Intergenic -10176 ENSMUSG00000062797.14 ENSMUSG00000062797 ENSMUST00000207695 Hikeshi protein_coding Interval_111518 chr4 22367408 22368031 + 0 NA intron (ENSMUSG00000040410.14, intron 1 of 8) protein_coding-intron (ENSMUSG00000040410.14, intron 1 of 8) 10159 ENSMUSG00000040410.14 ENSMUSG00000040410 ENSMUST00000184582 Fbxl4 protein_coding Interval_47236 chr13 78874977 78875649 + 0 NA Intergenic Intergenic 79479 ENSMUSG00000114557.1 ENSMUSG00000114557 ENSMUST00000225033 Gm8345 processed_pseudogene Interval_88567 chr2 6212392 6213570 + 0 NA promoter-TSS (ENSMUSG00000039063.5) protein_coding-promoter-TSS (ENSMUSG00000039063.5) -16773 ENSMUSG00000039063.5 ENSMUSG00000039063 ENSMUST00000114941 Echdc3 protein_coding Interval_36405 chr12 43834656 43835128 + 0 NA intron (ENSMUSG00000112258.1, intron 2 of 2) lincRNA-intron (ENSMUSG00000112258.1, intron 2 of 2) 9301 ENSMUSG00000112258.1 ENSMUSG00000112258 ENSMUST00000217666 Gm10165 lincRNA Interval_138061 chr6 84922149 84922325 + 0 NA intron (ENSMUSG00000108012.1, intron 1 of 3) protein_coding-intron (ENSMUSG00000033769.16, intron 6 of 16) 1114 ENSMUSG00000108012.1 ENSMUSG00000108012 ENSMUST00000204154 Gm44012 antisense Interval_155908 chr8 40950977 40951205 + 0 NA intron (ENSMUSG00000031595.9, intron 2 of 5) protein_coding-intron (ENSMUSG00000031595.9, intron 2 of 5) 24879 ENSMUSG00000031595.9 ENSMUSG00000031595 ENSMUST00000034004 Pdgfrl protein_coding Interval_65485 chr16 22656421 22657547 + 0 NA promoter-TSS (ENSMUSG00000022861.17) protein_coding-promoter-TSS (ENSMUSG00000022861.17) 205 ENSMUSG00000022861.17 ENSMUSG00000022861 ENSMUST00000231249 Dgkg protein_coding Interval_167551 chr9 70408350 70409222 + 0 NA intron (ENSMUSG00000032218.7, intron 8 of 8) protein_coding-intron (ENSMUSG00000032218.7, intron 8 of 8) -3033 ENSMUSG00000093763.1 ENSMUSG00000093763 ENSMUST00000176002 Mir5626 miRNA Interval_56848 chr14 122415922 122417425 + 0 NA Intergenic Intergenic -9930 ENSMUSG00000115263.1 ENSMUSG00000115263 ENSMUST00000228409 Gm5089 antisense Interval_170190 chr9 106079981 106081129 + 0 NA intron (ENSMUSG00000032572.9, intron 2 of 37) protein_coding-intron (ENSMUSG00000032572.9, intron 2 of 37) -14919 ENSMUSG00000103434.1 ENSMUSG00000103434 ENSMUST00000192983 Gm36993 TEC Interval_96927 chr2 129592463 129594384 + 0 NA promoter-TSS (ENSMUSG00000037902.18) protein_coding-promoter-TSS (ENSMUSG00000037902.18) 584 ENSMUSG00000037902.18 ENSMUSG00000037902 ENSMUST00000162764 Sirpa protein_coding Interval_114559 chr4 82483775 82484130 + 0 NA intron (ENSMUSG00000008575.17, intron 2 of 4) protein_coding-intron (ENSMUSG00000008575.17, intron 2 of 11) -24064 ENSMUSG00000087413.1 ENSMUSG00000087413 ENSMUST00000139835 Gm11266 antisense Interval_1677 chr1 30973801 30974046 + 0 NA Intergenic Intergenic 4045 ENSMUSG00000117091.1 ENSMUSG00000117091 ENSMUST00000178317 Gm5698 protein_coding Interval_75348 chr17 66055697 66056183 + 0 NA intron (ENSMUSG00000034647.15, intron 1 of 8) protein_coding-intron (ENSMUSG00000034647.15, intron 1 of 12) -30154 ENSMUSG00000094158.1 ENSMUSG00000094158 ENSMUST00000083372 Gm23264 snRNA Interval_131665 chr5 139149440 139150901 + 0 NA promoter-TSS (ENSMUSG00000025857.10) protein_coding-promoter-TSS (ENSMUSG00000025857.10) -59 ENSMUSG00000025857.10 ENSMUSG00000025857 ENSMUST00000127542 Dnaaf5 protein_coding Interval_43946 chr13 38234692 38235872 + 0 NA Intergenic Intergenic 19346 ENSMUSG00000021431.15 ENSMUSG00000021431 ENSMUST00000223893 Snrnp48 protein_coding Interval_165 JH584304.1 52905 54408 + 0 NA NA NA NA NA Interval_156261 chr8 46600981 46601296 + 0 NA intron (ENSMUSG00000038225.15, intron 5 of 14) protein_coding-intron (ENSMUSG00000038225.15, intron 5 of 14) -3611 ENSMUSG00000110270.1 ENSMUSG00000110270 ENSMUST00000211143 Gm45607 antisense Interval_104161 chr3 59277723 59277972 + 0 NA intron (ENSMUSG00000056476.13, intron 38 of 43) protein_coding-intron (ENSMUSG00000056476.13, intron 37 of 42) 8061 ENSMUSG00000104550.1 ENSMUSG00000104550 ENSMUST00000199400 Gm43589 TEC Interval_96324 chr2 121620904 121621949 + 0 NA intron (ENSMUSG00000027238.17, intron 1 of 7) protein_coding-intron (ENSMUSG00000027238.17, intron 1 of 13) -70075 ENSMUSG00000027238.17 ENSMUSG00000027238 ENSMUST00000153704 Frmd5 protein_coding Interval_5975 chr1 93667675 93669528 + 0 NA Intergenic Intergenic -9942 ENSMUSG00000026277.14 ENSMUSG00000026277 ENSMUST00000186287 Stk25 protein_coding Interval_111115 chr4 12139840 12141071 + 0 NA exon (ENSMUSG00000046667.14, exon 1 of 3) protein_coding-exon (ENSMUSG00000046667.14, exon 1 of 3) 191 ENSMUSG00000046667.14 ENSMUSG00000046667 ENSMUST00000069128 Rbm12b1 protein_coding Interval_155531 chr8 34133551 34133916 + 0 NA Intergenic Intergenic 13300 ENSMUSG00000031513.8 ENSMUSG00000031513 ENSMUST00000033910 Leprotl1 protein_coding Interval_50711 chr14 18428359 18429692 + 0 NA Intergenic Intergenic -16850 ENSMUSG00000065858.1 ENSMUSG00000065858 ENSMUST00000083924 Gm22350 snRNA Interval_133188 chr5 150431440 150431728 + 0 NA intron (ENSMUSG00000056602.12, intron 40 of 60) protein_coding-intron (ENSMUSG00000056602.12, intron 40 of 60) 10720 ENSMUSG00000118543.1 ENSMUSG00000118543 ENSMUST00000239092 AC154885.1 unprocessed_pseudogene Interval_170357 chr9 107377993 107378539 + 0 NA Intergenic Intergenic -24280 ENSMUSG00000102144.1 ENSMUSG00000102144 ENSMUST00000194547 4930429P21Rik lincRNA Interval_164078 chr9 31331449 31333002 + 0 NA intron (ENSMUSG00000042496.18, intron 6 of 20) protein_coding-intron (ENSMUSG00000042496.18, intron 5 of 20) 18672 ENSMUSG00000042496.18 ENSMUSG00000042496 ENSMUST00000074510 Prdm10 protein_coding Interval_162623 chr9 6866180 6866373 + 0 NA Intergenic Intergenic 64433 ENSMUSG00000111464.1 ENSMUSG00000111464 ENSMUST00000213261 Gm48675 processed_pseudogene Interval_64079 chr16 7366195 7366629 + 0 NA intron (ENSMUSG00000008658.16, intron 10 of 12) protein_coding-intron (ENSMUSG00000008658.16, intron 12 of 14) 172665 ENSMUSG00000008658.16 ENSMUSG00000008658 ENSMUST00000231031 Rbfox1 protein_coding Interval_78361 chr18 12178798 12179773 + 0 NA promoter-TSS (ENSMUSG00000024410.15) protein_coding-promoter-TSS (ENSMUSG00000024410.15) -9886 ENSMUSG00000024410.15 ENSMUSG00000024410 ENSMUST00000234982 Rmc1 protein_coding Interval_82775 chr18 77019181 77020033 + 0 NA intron (ENSMUSG00000025420.13, intron 1 of 5) protein_coding-intron (ENSMUSG00000025420.13, intron 1 of 13) 27680 ENSMUSG00000025420.13 ENSMUSG00000025420 ENSMUST00000123650 Katnal2 protein_coding Interval_39542 chr12 89764732 89765382 + 0 NA intron (ENSMUSG00000066392.12, intron 13 of 18) protein_coding-intron (ENSMUSG00000066392.12, intron 14 of 19) -47351 ENSMUSG00000066392.12 ENSMUSG00000066392 ENSMUST00000110130 Nrxn3 protein_coding Interval_156237 chr8 46340663 46341241 + 0 NA Intergenic Intergenic -22299 ENSMUSG00000110035.1 ENSMUSG00000110035 ENSMUST00000210605 Gm30931 lincRNA Interval_141998 chr6 136463860 136464481 + 0 NA Intergenic Intergenic 23016 ENSMUSG00000091408.3 ENSMUSG00000091408 ENSMUST00000178117 Gm6728 processed_pseudogene Interval_15470 chr10 47758454 47758856 + 0 NA Intergenic Intergenic 118532 ENSMUSG00000112702.1 ENSMUSG00000112702 ENSMUST00000217715 Gm47571 TEC Interval_90929 chr2 33542852 33545020 + 0 NA Intergenic Intergenic 54154 ENSMUSG00000086939.1 ENSMUSG00000086939 ENSMUST00000134014 Gm13530 lincRNA Interval_114282 chr4 70579575 70580144 + 0 NA Intergenic Intergenic -44931 ENSMUSG00000039270.9 ENSMUSG00000039270 ENSMUST00000037881 Megf9 protein_coding Interval_164272 chr9 34857569 34858248 + 0 NA intron (ENSMUSG00000032036.15, intron 1 of 15) protein_coding-intron (ENSMUSG00000032036.15, intron 1 of 16) 71601 ENSMUSG00000053889.5 ENSMUSG00000053889 ENSMUST00000066604 Kirrel3os antisense Interval_170222 chr9 106290388 106291158 + 0 NA promoter-TSS (ENSMUSG00000023345.17) protein_coding-promoter-TSS (ENSMUSG00000023345.17) 9163 ENSMUSG00000023345.17 ENSMUSG00000023345 ENSMUST00000186366 Poc1a protein_coding Interval_172407 chrX 18169096 18169395 + 0 NA intron (ENSMUSG00000037369.17, intron 2 of 7) protein_coding-intron (ENSMUSG00000037369.17, intron 2 of 28) 23388 ENSMUSG00000025043.3 ENSMUSG00000025043 ENSMUST00000026018 Dusp21 protein_coding Interval_30498 chr11 94760302 94761328 + 0 NA Intergenic Intergenic -3052 ENSMUSG00000075611.5 ENSMUSG00000075611 ENSMUST00000146507 Gm11545 unprocessed_pseudogene Interval_29504 chr11 84504091 84504824 + 0 NA intron (ENSMUSG00000018697.14, intron 5 of 8) protein_coding-intron (ENSMUSG00000018697.14, intron 5 of 12) 9065 ENSMUSG00000018697.14 ENSMUSG00000018697 ENSMUST00000148434 Aatf protein_coding Interval_115280 chr4 95184364 95185368 + 0 NA Intergenic Intergenic -8447 ENSMUSG00000084918.1 ENSMUSG00000084918 ENSMUST00000126143 Gm12708 lincRNA Interval_62643 chr15 95906081 95906430 + 0 NA intron (ENSMUSG00000064210.7, intron 4 of 20) protein_coding-intron (ENSMUSG00000064210.7, intron 3 of 19) -26438 ENSMUSG00000092978.1 ENSMUSG00000092978 ENSMUST00000175237 Gm25070 miRNA Interval_65200 chr16 20477921 20480456 + 0 NA Intergenic Intergenic -9600 ENSMUSG00000093381.1 ENSMUSG00000093381 ENSMUST00000177503 Gm20615 unprocessed_pseudogene Interval_4387 chr1 73672003 73673114 + 0 NA intron (ENSMUSG00000100301.6, intron 2 of 3) lincRNA-intron (ENSMUSG00000100301.6, intron 7 of 8) 71389 ENSMUSG00000100301.6 ENSMUSG00000100301 ENSMUST00000189514 6030407O03Rik lincRNA Interval_39610 chr12 91545195 91545517 + 0 NA intron (ENSMUSG00000020963.15, intron 10 of 10) protein_coding-intron (ENSMUSG00000020963.15, intron 10 of 10) 28216 ENSMUSG00000080365.1 ENSMUSG00000080365 ENSMUST00000116715 Gm25776 snoRNA Interval_117704 chr4 125658455 125658754 + 0 NA intron (ENSMUSG00000001985.9, intron 8 of 15) protein_coding-intron (ENSMUSG00000001985.9, intron 8 of 15) 153855 ENSMUSG00000094403.1 ENSMUSG00000094403 ENSMUST00000102081 Mir692-2 miRNA Interval_107785 chr3 114823018 114823612 + 0 NA TTS (ENSMUSG00000077410.1) snoRNA-TTS (ENSMUSG00000077410.1) 970 ENSMUSG00000077410.1 ENSMUSG00000077410 ENSMUST00000104222 Gm23750 snoRNA Interval_171191 chr9 115088002 115089876 + 0 NA promoter-TSS (ENSMUSG00000040875.12) protein_coding-promoter-TSS (ENSMUSG00000040875.12) 90323 ENSMUSG00000040875.12 ENSMUSG00000040875 ENSMUST00000182413 Osbpl10 protein_coding Interval_131698 chr5 139363829 139365458 + 0 NA intron (ENSMUSG00000053553.11, intron 2 of 3) protein_coding-intron (ENSMUSG00000053553.11, intron 2 of 4) 5102 ENSMUSG00000065593.1 ENSMUSG00000065593 ENSMUST00000083659 Mir339 miRNA Interval_159356 chr8 94036630 94037683 + 0 NA promoter-TSS (ENSMUSG00000031754.10) protein_coding-promoter-TSS (ENSMUSG00000031754.10) -140 ENSMUSG00000033009.15 ENSMUSG00000033009 ENSMUST00000145717 Ogfod1 protein_coding Interval_166102 chr9 56619310 56621392 + 0 NA exon (ENSMUSG00000049556.5, exon 4 of 4) protein_coding-exon (ENSMUSG00000049556.5, exon 4 of 4) 13658 ENSMUSG00000097870.2 ENSMUSG00000097870 ENSMUST00000181927 Gm26868 lincRNA Interval_27527 chr11 68417605 68418340 + 0 NA Intergenic Intergenic -30960 ENSMUSG00000020902.12 ENSMUSG00000020902 ENSMUST00000135141 Ntn1 protein_coding Interval_124133 chr5 38578703 38579187 + 0 NA Intergenic Intergenic 3914 ENSMUSG00000086422.1 ENSMUSG00000086422 ENSMUST00000147322 4930421P07Rik processed_pseudogene Interval_166515 chr9 60316781 60317003 + 0 NA intron (ENSMUSG00000032289.15, intron 5 of 16) protein_coding-intron (ENSMUSG00000032289.15, intron 6 of 17) -17250 ENSMUSG00000111296.1 ENSMUSG00000111296 ENSMUST00000214235 2010001M07Rik antisense Interval_136040 chr6 50232865 50234462 + 0 NA intron (ENSMUSG00000029821.15, intron 3 of 9) protein_coding-intron (ENSMUSG00000029821.15, intron 4 of 10) 28312 ENSMUSG00000029821.15 ENSMUSG00000029821 ENSMUST00000204700 Gsdme protein_coding Interval_7859 chr1 134201685 134202350 + 0 NA TTS (ENSMUSG00000042451.12) protein_coding-TTS (ENSMUSG00000042451.12) 8560 ENSMUSG00000042451.12 ENSMUSG00000042451 ENSMUST00000191577 Mybph protein_coding Interval_126203 chr5 82253194 82254333 + 0 NA Intergenic Intergenic -83088 ENSMUSG00000106926.1 ENSMUSG00000106926 ENSMUST00000200912 Rpl7-ps7 processed_pseudogene Interval_169254 chr9 95844747 95845602 + 0 NA exon (ENSMUSG00000049493.13, exon 1 of 16) protein_coding-exon (ENSMUSG00000049493.13, exon 1 of 16) 137 ENSMUSG00000049493.13 ENSMUSG00000049493 ENSMUST00000135816 Pls1 protein_coding Interval_36202 chr12 38904356 38904584 + 0 NA Intergenic Intergenic 2483 ENSMUSG00000113933.1 ENSMUSG00000113933 ENSMUST00000223252 Gm34611 lincRNA Interval_115609 chr4 101366749 101367586 + 0 NA intron (ENSMUSG00000087361.7, intron 2 of 3) lincRNA-intron (ENSMUSG00000087361.7, intron 2 of 3) 516 ENSMUSG00000087361.7 ENSMUSG00000087361 ENSMUST00000142581 0610043K17Rik lincRNA Interval_103775 chr3 52644030 52645237 + 0 NA Intergenic Intergenic 31798 ENSMUSG00000070490.4 ENSMUSG00000070490 ENSMUST00000076317 Gm10293 processed_pseudogene Interval_120258 chr4 144992213 144993320 + 0 NA intron (ENSMUSG00000020220.16, intron 21 of 23) protein_coding-intron (ENSMUSG00000020220.16, intron 65 of 67) -33918 ENSMUSG00000103911.1 ENSMUSG00000103911 ENSMUST00000193467 Gm38074 TEC Interval_20602 chr10 119319954 119320439 + 0 NA promoter-TSS (ENSMUSG00000112155.1) lincRNA-promoter-TSS (ENSMUSG00000112155.1) -38 ENSMUSG00000112155.1 ENSMUSG00000112155 ENSMUST00000218762 4930477N07Rik lincRNA Interval_116387 chr4 111244762 111245348 + 0 NA intron (ENSMUSG00000061298.14, intron 1 of 6) protein_coding-intron (ENSMUSG00000061298.14, intron 5 of 12) -45063 ENSMUSG00000081068.1 ENSMUSG00000081068 ENSMUST00000121030 Gm12804 processed_pseudogene Interval_137847 chr6 82909069 82909964 + 0 NA Intergenic Intergenic -11416 ENSMUSG00000109076.1 ENSMUSG00000109076 ENSMUST00000208233 Gm45145 lincRNA Interval_54084 chr14 65097464 65098612 + 0 NA promoter-TSS (ENSMUSG00000021978.9) protein_coding-promoter-TSS (ENSMUSG00000021978.9) 67 ENSMUSG00000021978.9 ENSMUSG00000021978 ENSMUST00000223989 Extl3 protein_coding Interval_171694 chr9 120190955 120192144 + 0 NA intron (ENSMUSG00000111219.1, intron 1 of 2) processed_transcript-intron (ENSMUSG00000111219.1, intron 1 of 2) 8985 ENSMUSG00000104494.1 ENSMUSG00000104494 ENSMUST00000193250 Gm37111 TEC Interval_74718 chr17 56134232 56135232 + 0 NA promoter-TSS (ENSMUSG00000001227.12) protein_coding-promoter-TSS (ENSMUSG00000001227.12) -889 ENSMUSG00000001227.12 ENSMUSG00000001227 ENSMUST00000167545 Sema6b protein_coding Interval_17263 chr10 75423317 75424600 + 0 NA intron (ENSMUSG00000033416.15, intron 2 of 3) protein_coding-intron (ENSMUSG00000033427.14, intron 3 of 9) -18662 ENSMUSG00000084622.1 ENSMUSG00000084622 ENSMUST00000122673 Gm25545 misc_RNA Interval_15340 chr10 44767770 44768042 + 0 NA intron (ENSMUSG00000110893.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000110893.1, intron 1 of 1) -29006 ENSMUSG00000111494.1 ENSMUSG00000111494 ENSMUST00000213122 4930431F10Rik lincRNA Interval_117419 chr4 123599910 123600453 + 0 NA intron (ENSMUSG00000028649.21, intron 1 of 97) protein_coding-intron (ENSMUSG00000028649.21, intron 1 of 92) 13562 ENSMUSG00000028649.21 ENSMUSG00000028649 ENSMUST00000146000 Macf1 protein_coding Interval_150076 chr7 105639863 105641521 + 0 NA promoter-TSS (ENSMUSG00000030881.15) protein_coding-promoter-TSS (ENSMUSG00000030881.15) 115 ENSMUSG00000110234.2 ENSMUSG00000110234 ENSMUST00000210312 Gm45799 protein_coding Interval_33339 chr11 116011595 116013219 + 0 NA intron (ENSMUSG00000020766.4, intron 1 of 7) protein_coding-intron (ENSMUSG00000020766.4, intron 1 of 7) 312 ENSMUSG00000020766.4 ENSMUSG00000020766 ENSMUST00000021114 Galk1 protein_coding Interval_6137 chr1 97865624 97866455 + 0 NA intron (ENSMUSG00000026335.16, intron 14 of 25) protein_coding-intron (ENSMUSG00000026335.16, intron 14 of 25) 14026 ENSMUSG00000104140.1 ENSMUSG00000104140 ENSMUST00000192914 Gm37140 TEC Interval_29188 chr11 81238542 81238890 + 0 NA intron (ENSMUSG00000020704.13, intron 1 of 9) protein_coding-intron (ENSMUSG00000020704.13, intron 1 of 9) -146297 ENSMUSG00000086971.1 ENSMUSG00000086971 ENSMUST00000141593 4930527B05Rik antisense Interval_41957 chr13 5497695 5497971 + 0 NA intron (ENSMUSG00000114098.1, intron 3 of 5) lincRNA-intron (ENSMUSG00000114098.1, intron 3 of 3) 42924 ENSMUSG00000114098.1 ENSMUSG00000114098 ENSMUST00000223343 Gm40660 lincRNA Interval_66731 chr16 36727233 36727673 + 0 NA TTS (ENSMUSG00000022900.14) protein_coding-TTS (ENSMUSG00000022900.14) -8134 ENSMUSG00000116821.1 ENSMUSG00000116821 ENSMUST00000232393 Gm8538 processed_pseudogene Interval_1464 chr1 23792209 23793485 + 0 NA intron (ENSMUSG00000026156.8, intron 2 of 2) protein_coding-intron (ENSMUSG00000026156.8, intron 1 of 3) 31094 ENSMUSG00000026156.8 ENSMUSG00000026156 ENSMUST00000140583 B3gat2 protein_coding Interval_165463 chr9 48458887 48459620 + 0 NA Intergenic Intergenic 8853 ENSMUSG00000063543.5 ENSMUSG00000063543 ENSMUST00000165252 Gm5616 processed_pseudogene Interval_28642 chr11 77500795 77501608 + 0 NA intron (ENSMUSG00000011877.13, intron 7 of 18) protein_coding-intron (ENSMUSG00000011877.13, intron 7 of 19) 2110 ENSMUSG00000011877.13 ENSMUSG00000011877 ENSMUST00000128796 Git1 protein_coding Interval_25197 chr11 45144617 45144822 + 0 NA Intergenic Intergenic -16224 ENSMUSG00000087089.1 ENSMUSG00000087089 ENSMUST00000146372 Gm12160 lincRNA Interval_64163 chr16 8782833 8783775 + 0 NA intron (ENSMUSG00000022710.17, intron 1 of 31) protein_coding-intron (ENSMUSG00000022710.17, intron 1 of 31) -17028 ENSMUSG00000084737.1 ENSMUSG00000084737 ENSMUST00000122788 Gm25805 snRNA Interval_131002 chr5 134494191 134494845 + 0 NA intron (ENSMUSG00000063146.11, intron 13 of 16) protein_coding-intron (ENSMUSG00000063146.11, intron 12 of 15) -9072 ENSMUSG00000106802.1 ENSMUSG00000106802 ENSMUST00000200763 Gm42885 TEC Interval_53021 chr14 53581990 53582250 + 0 NA Intergenic Intergenic -4380 ENSMUSG00000104738.1 ENSMUSG00000104738 ENSMUST00000198999 Trav3-2 TR_V_pseudogene Interval_151063 chr7 118254153 118254603 + 0 NA Intergenic Intergenic 10513 ENSMUSG00000055159.7 ENSMUSG00000055159 ENSMUST00000138180 4930583K01Rik bidirectional_promoter_lncRNA Interval_4720 chr1 77629023 77630487 + 0 NA Intergenic Intergenic 59083 ENSMUSG00000101506.1 ENSMUSG00000101506 ENSMUST00000185671 Gm28385 processed_pseudogene Interval_135678 chr6 43254327 43254740 + 0 NA Intergenic Intergenic 11322 ENSMUSG00000108190.1 ENSMUSG00000108190 ENSMUST00000203086 Gm44731 antisense Interval_103390 chr3 41160391 41160889 + 0 NA Intergenic Intergenic 12023 ENSMUSG00000105258.1 ENSMUSG00000105258 ENSMUST00000197878 Gm40038 lincRNA Interval_139048 chr6 94588624 94589179 + 0 NA intron (ENSMUSG00000045100.11, intron 1 of 4) protein_coding-intron (ENSMUSG00000045100.11, intron 6 of 9) 17514 ENSMUSG00000098531.1 ENSMUSG00000098531 ENSMUST00000183891 Mir7041 miRNA Interval_154412 chr8 15896287 15897092 + 0 NA intron (ENSMUSG00000060924.15, intron 20 of 20) protein_coding-intron (ENSMUSG00000060924.15, intron 69 of 69) 19025 ENSMUSG00000109757.1 ENSMUSG00000109757 ENSMUST00000211639 Gm7128 processed_pseudogene Interval_79404 chr18 31696919 31697495 + 0 NA intron (ENSMUSG00000024260.14, intron 15 of 20) protein_coding-intron (ENSMUSG00000024260.14, intron 15 of 20) -41508 ENSMUSG00000117533.1 ENSMUSG00000117533 ENSMUST00000234849 Gm50060 processed_pseudogene Interval_30076 chr11 89020509 89022673 + 0 NA Intergenic Intergenic 22215 ENSMUSG00000000275.16 ENSMUSG00000000275 ENSMUST00000000284 Trim25 protein_coding Interval_31097 chr11 98120743 98122166 + 0 NA intron (ENSMUSG00000020883.18, intron 2 of 7) protein_coding-intron (ENSMUSG00000020883.18, intron 2 of 14) 28949 ENSMUSG00000020883.18 ENSMUSG00000020883 ENSMUST00000148473 Fbxl20 protein_coding Interval_118534 chr4 132337249 132337565 + 0 NA TTS (ENSMUSG00000028896.13) protein_coding-TTS (ENSMUSG00000028896.13) -7913 ENSMUSG00000028898.15 ENSMUSG00000028898 ENSMUST00000141317 Trnau1ap protein_coding Interval_93627 chr2 75117842 75119748 + 0 NA Intergenic Intergenic 19003 ENSMUSG00000087333.1 ENSMUSG00000087333 ENSMUST00000143898 Gm13652 lincRNA Interval_159766 chr8 101932255 101932532 + 0 NA Intergenic Intergenic -392685 ENSMUSG00000087985.1 ENSMUSG00000087985 ENSMUST00000157360 Gm22223 snoRNA Interval_170804 chr9 110873582 110874271 + 0 NA exon (ENSMUSG00000049555.10, exon 3 of 6) protein_coding-exon (ENSMUSG00000049555.10, exon 3 of 6) 2095 ENSMUSG00000049555.10 ENSMUSG00000049555 ENSMUST00000199189 Tmie protein_coding Interval_134513 chr6 29263705 29264336 + 0 NA Intergenic Intergenic -8468 ENSMUSG00000043421.8 ENSMUSG00000043421 ENSMUST00000054445 Hilpda protein_coding Interval_25582 chr11 49943592 49943863 + 0 NA intron (ENSMUSG00000020374.16, intron 1 of 13) protein_coding-intron (ENSMUSG00000020374.16, intron 1 of 13) -20058 ENSMUSG00000020374.16 ENSMUSG00000020374 ENSMUST00000109172 Rasgef1c protein_coding Interval_66258 chr16 32689462 32690190 + 0 NA Intergenic Intergenic 11895 ENSMUSG00000022791.19 ENSMUSG00000022791 ENSMUST00000232650 Tnk2 protein_coding Interval_170272 chr9 106607022 106608021 + 0 NA Intergenic Intergenic -18460 ENSMUSG00000091129.3 ENSMUSG00000091129 ENSMUST00000171091 Iqcf6 protein_coding Interval_36707 chr12 52300204 52300627 + 0 NA intron (ENSMUSG00000035142.18, intron 8 of 10) protein_coding-intron (ENSMUSG00000035142.18, intron 8 of 10) 124328 ENSMUSG00000035142.18 ENSMUSG00000035142 ENSMUST00000162111 Nubpl protein_coding Interval_114490 chr4 81148966 81150528 + 0 NA Intergenic Intergenic 182303 ENSMUSG00000099273.1 ENSMUSG00000099273 ENSMUST00000184920 Gm27452 miRNA Interval_39177 chr12 85625841 85626406 + 0 NA intron (ENSMUSG00000034271.16, intron 2 of 3) protein_coding-intron (ENSMUSG00000034271.16, intron 2 of 3) 23901 ENSMUSG00000034271.16 ENSMUSG00000034271 ENSMUST00000222689 Jdp2 protein_coding Interval_31492 chr11 100989772 100990176 + 0 NA Intergenic Intergenic -19423 ENSMUSG00000004044.9 ENSMUSG00000004044 ENSMUST00000132934 Cavin1 protein_coding Interval_108321 chr3 123722997 123723369 + 0 NA Intergenic Intergenic 20220 ENSMUSG00000065132.1 ENSMUSG00000065132 ENSMUST00000083198 Gm24456 snRNA Interval_132803 chr5 147966436 147966766 + 0 NA intron (ENSMUSG00000029651.16, intron 1 of 14) protein_coding-intron (ENSMUSG00000029651.16, intron 1 of 14) -9435 ENSMUSG00000085565.1 ENSMUSG00000085565 ENSMUST00000138406 Gm15721 lincRNA Interval_38058 chr12 75388751 75390120 + 0 NA intron (ENSMUSG00000046768.13, intron 2 of 3) protein_coding-intron (ENSMUSG00000046768.13, intron 2 of 4) 27346 ENSMUSG00000048982.3 ENSMUSG00000048982 ENSMUST00000051079 Gphb5 protein_coding Interval_50367 chr14 12112489 12115068 + 0 NA intron (ENSMUSG00000021745.14, intron 3 of 3) protein_coding-intron (ENSMUSG00000021745.14, intron 7 of 29) 38806 ENSMUSG00000114246.1 ENSMUSG00000114246 ENSMUST00000225204 Gm48603 TEC Interval_18375 chr10 85386350 85389836 + 0 NA exon (ENSMUSG00000020042.15, exon 1 of 10) protein_coding-exon (ENSMUSG00000020042.15, exon 1 of 10) 54192 ENSMUSG00000087895.1 ENSMUSG00000087895 ENSMUST00000157270 Gm25281 miRNA Interval_107248 chr3 104941858 104942309 + 0 NA Intergenic Intergenic 16290 ENSMUSG00000105925.1 ENSMUSG00000105925 ENSMUST00000200502 Gm43846 sense_intronic Interval_27968 chr11 71696743 71697788 + 0 NA exon (ENSMUSG00000111373.1, exon 1 of 1) processed_pseudogene-exon (ENSMUSG00000111373.1, exon 1 of 1) 251 ENSMUSG00000111373.1 ENSMUSG00000111373 ENSMUST00000215182 Gm48818 processed_pseudogene Interval_6471 chr1 110904015 110906373 + 0 NA intron (ENSMUSG00000047216.8, intron 9 of 11) protein_coding-intron (ENSMUSG00000047216.8, intron 9 of 11) 55632 ENSMUSG00000102788.1 ENSMUSG00000102788 ENSMUST00000194910 Gm38255 TEC Interval_132584 chr5 146461062 146461929 + 0 NA intron (ENSMUSG00000029636.11, intron 7 of 9) protein_coding-intron (ENSMUSG00000029636.11, intron 7 of 9) 5886 ENSMUSG00000029636.11 ENSMUSG00000029636 ENSMUST00000238592 Wasf3 protein_coding Interval_96955 chr2 129879641 129880966 + 0 NA Intergenic Intergenic -68265 ENSMUSG00000100255.1 ENSMUSG00000100255 ENSMUST00000187719 Gm28196 lincRNA Interval_100272 chr2 168103284 168104948 + 0 NA Intergenic Intergenic -10761 ENSMUSG00000118526.2 ENSMUSG00000118526 ENSMUST00000239040 AL831766.1 unitary_pseudogene Interval_24303 chr11 32216832 32217109 + 0 NA exon (ENSMUSG00000020282.18, exon 1 of 11) protein_coding-exon (ENSMUSG00000020282.18, exon 1 of 11) 5274 ENSMUSG00000020282.18 ENSMUSG00000020282 ENSMUST00000144902 Rhbdf1 protein_coding Interval_122222 chr5 20276153 20276383 + 0 NA intron (ENSMUSG00000040003.18, intron 2 of 15) protein_coding-intron (ENSMUSG00000040003.18, intron 6 of 22) 11927 ENSMUSG00000087768.1 ENSMUSG00000087768 ENSMUST00000157143 Gm22755 snRNA Interval_8881 chr1 151778618 151779299 + 0 NA intron (ENSMUSG00000043019.12, intron 6 of 20) protein_coding-intron (ENSMUSG00000043019.12, intron 6 of 19) 23498 ENSMUSG00000043019.12 ENSMUSG00000043019 ENSMUST00000191070 Edem3 protein_coding Interval_167558 chr9 70461024 70461600 + 0 NA intron (ENSMUSG00000032217.13, intron 4 of 14) protein_coding-intron (ENSMUSG00000032217.13, intron 4 of 14) -7466 ENSMUSG00000032217.13 ENSMUSG00000032217 ENSMUST00000213694 Rnf111 protein_coding Interval_58141 chr15 28811842 28812230 + 0 NA Intergenic Intergenic -42968 ENSMUSG00000115459.1 ENSMUSG00000115459 ENSMUST00000226719 Gm49280 TEC Interval_146330 chr7 45370173 45371170 + 0 NA promoter-TSS (ENSMUSG00000003872.9) protein_coding-promoter-TSS (ENSMUSG00000003872.9) -2069 ENSMUSG00000003872.9 ENSMUSG00000003872 ENSMUST00000209226 Lin7b protein_coding Interval_137552 chr6 73140208 73140507 + 0 NA intron (ENSMUSG00000052861.13, intron 29 of 75) protein_coding-intron (ENSMUSG00000052861.13, intron 30 of 76) 1323 ENSMUSG00000065072.1 ENSMUSG00000065072 ENSMUST00000083138 Gm24533 snoRNA Interval_150961 chr7 116763229 116763611 + 0 NA Intergenic Intergenic 41079 ENSMUSG00000108740.1 ENSMUSG00000108740 ENSMUST00000206542 Gm6008 processed_pseudogene Interval_131277 chr5 136125153 136125396 + 0 NA exon (ENSMUSG00000029703.10, exon 1 of 4) protein_coding-exon (ENSMUSG00000029703.10, exon 1 of 4) -3604 ENSMUSG00000105349.1 ENSMUSG00000105349 ENSMUST00000199799 Gm43604 antisense Interval_39473 chr12 88110932 88112797 + 0 NA promoter-TSS (ENSMUSG00000113677.1) processed_pseudogene-promoter-TSS (ENSMUSG00000113677.1) -703 ENSMUSG00000113677.1 ENSMUSG00000113677 ENSMUST00000220581 Gm48487 processed_pseudogene Interval_109065 chr3 135537116 135537882 + 0 NA intron (ENSMUSG00000028164.15, intron 7 of 12) protein_coding-intron (ENSMUSG00000028164.15, intron 7 of 16) -10967 ENSMUSG00000083610.1 ENSMUSG00000083610 ENSMUST00000121735 Oaz2-ps processed_pseudogene Interval_102494 chr3 27197703 27197948 + 0 NA intron (ENSMUSG00000027698.14, intron 1 of 3) protein_coding-intron (ENSMUSG00000027698.14, intron 1 of 4) 9384 ENSMUSG00000027698.14 ENSMUSG00000027698 ENSMUST00000140872 Nceh1 protein_coding Interval_48670 chr13 101032466 101033309 + 0 NA Intergenic Intergenic 6359 ENSMUSG00000096722.2 ENSMUSG00000096722 ENSMUST00000179479 Hmgb1-ps9 processed_pseudogene Interval_61917 chr15 85226485 85227378 + 0 NA intron (ENSMUSG00000006369.14, intron 3 of 14) protein_coding-intron (ENSMUSG00000006369.14, intron 3 of 16) -36523 ENSMUSG00000006369.14 ENSMUSG00000006369 ENSMUST00000160798 Fbln1 protein_coding Interval_10877 chr1 176583528 176583905 + 0 NA Intergenic Intergenic -56443 ENSMUSG00000104021.1 ENSMUSG00000104021 ENSMUST00000194241 Gm36536 lincRNA Interval_158796 chr8 86719501 86719730 + 0 NA intron (ENSMUSG00000047866.18, intron 12 of 12) protein_coding-intron (ENSMUSG00000047866.18, intron 12 of 12) -25838 ENSMUSG00000074178.3 ENSMUSG00000074178 ENSMUST00000098532 Gm10638 antisense Interval_57405 chr15 10618248 10618495 + 0 NA intron (ENSMUSG00000022246.14, intron 3 of 16) protein_coding-intron (ENSMUSG00000022246.14, intron 3 of 17) 18034 ENSMUSG00000115667.1 ENSMUSG00000115667 ENSMUST00000228059 Gm10389 antisense Interval_131935 chr5 140889176 140890342 + 0 NA intron (ENSMUSG00000036526.8, intron 13 of 24) protein_coding-intron (ENSMUSG00000036526.8, intron 13 of 24) -59602 ENSMUSG00000000149.10 ENSMUSG00000000149 ENSMUST00000198447 Gna12 protein_coding Interval_64094 chr16 7982738 7983098 + 0 NA Intergenic Intergenic 112816 ENSMUSG00000116450.1 ENSMUSG00000116450 ENSMUST00000230593 Gm49534 lincRNA Interval_40505 chr12 105327991 105328610 + 0 NA Intergenic Intergenic -5570 ENSMUSG00000097929.9 ENSMUSG00000097929 ENSMUST00000180503 Tunar protein_coding Interval_99511 chr2 162826445 162826689 + 0 NA Intergenic Intergenic -10099 ENSMUSG00000088064.1 ENSMUSG00000088064 ENSMUST00000157439 Gm24478 snRNA Interval_44791 chr13 48664868 48665567 + 0 NA exon (ENSMUSG00000021381.4, exon 2 of 4) protein_coding-exon (ENSMUSG00000021381.4, exon 2 of 4) 2219 ENSMUSG00000021381.4 ENSMUSG00000021381 ENSMUST00000021813 Barx1 protein_coding Interval_147286 chr7 65492124 65492419 + 0 NA intron (ENSMUSG00000030516.14, intron 2 of 4) protein_coding-intron (ENSMUSG00000030516.14, intron 2 of 4) -11050 ENSMUSG00000108533.1 ENSMUSG00000108533 ENSMUST00000207008 Gm44792 TEC Interval_90213 chr2 29060107 29060828 + 0 NA intron (ENSMUSG00000026803.17, intron 1 of 10) protein_coding-intron (ENSMUSG00000026803.17, intron 1 of 11) 201 ENSMUSG00000026803.17 ENSMUSG00000026803 ENSMUST00000130506 Ttf1 protein_coding Interval_137966 chr6 83788095 83788696 + 0 NA Intergenic Intergenic 4584 ENSMUSG00000108525.1 ENSMUSG00000108525 ENSMUST00000206355 Gm7443 processed_pseudogene Interval_39820 chr12 98723644 98724423 + 0 NA intron (ENSMUSG00000021009.15, intron 2 of 2) protein_coding-intron (ENSMUSG00000021009.15, intron 2 of 18) -35810 ENSMUSG00000021012.16 ENSMUSG00000021012 ENSMUST00000220660 Zc3h14 protein_coding Interval_326 chr1 3994343 3995086 + 0 NA Intergenic Intergenic -8499 ENSMUSG00000102343.1 ENSMUSG00000102343 ENSMUST00000192427 Gm37381 lincRNA Interval_92019 chr2 52619522 52620169 + 0 NA promoter-TSS (ENSMUSG00000025201.7) processed_pseudogene-promoter-TSS (ENSMUSG00000025201.7) 91 ENSMUSG00000025201.7 ENSMUSG00000025201 ENSMUST00000183232 Bloc1s2-ps processed_pseudogene Interval_144269 chr7 24141324 24141583 + 0 NA TTS (ENSMUSG00000047603.9) protein_coding-TTS (ENSMUSG00000047603.9) 7225 ENSMUSG00000047603.9 ENSMUSG00000047603 ENSMUST00000056549 Zfp235 protein_coding Interval_19837 chr10 110084779 110086209 + 0 NA intron (ENSMUSG00000020181.18, intron 3 of 40) protein_coding-intron (ENSMUSG00000020181.18, intron 3 of 4) 6803 ENSMUSG00000112197.1 ENSMUSG00000112197 ENSMUST00000220224 Gm47337 TEC Interval_47903 chr13 94271861 94272097 + 0 NA intron (ENSMUSG00000021687.14, intron 1 of 8) protein_coding-intron (ENSMUSG00000021687.14, intron 1 of 8) -22038 ENSMUSG00000113494.1 ENSMUSG00000113494 ENSMUST00000220853 Gm48102 lincRNA Interval_16160 chr10 61131201 61131610 + 0 NA intron (ENSMUSG00000020097.14, intron 2 of 6) protein_coding-intron (ENSMUSG00000020097.14, intron 2 of 14) -6170 ENSMUSG00000104762.1 ENSMUSG00000104762 ENSMUST00000197080 Gm44308 miRNA Interval_133975 chr6 17105636 17106140 + 0 NA TTS (ENSMUSG00000029552.19) protein_coding-TTS (ENSMUSG00000029552.19) 40728 ENSMUSG00000029552.19 ENSMUSG00000029552 ENSMUST00000076654 Tes protein_coding Interval_136774 chr6 59483701 59484050 + 0 NA Intergenic Intergenic -57581 ENSMUSG00000045441.5 ENSMUSG00000045441 ENSMUST00000051065 Gprin3 protein_coding Interval_163411 chr9 21320427 21321933 + 0 NA promoter-TSS (ENSMUSG00000111172.1) lincRNA-promoter-TSS (ENSMUSG00000111172.1) 482 ENSMUSG00000057193.8 ENSMUSG00000057193 ENSMUST00000213535 Slc44a2 protein_coding Interval_40491 chr12 105188666 105189514 + 0 NA Intergenic Intergenic -1953 ENSMUSG00000068940.7 ENSMUSG00000068940 ENSMUST00000090990 Tcl1b3 protein_coding Interval_134649 chr6 30153616 30153816 + 0 NA TTS (ENSMUSG00000058440.14) protein_coding-TTS (ENSMUSG00000058440.14) -9589 ENSMUSG00000065343.1 ENSMUSG00000065343 ENSMUST00000083409 Gm25580 misc_RNA Interval_125993 chr5 76687548 76688281 + 0 NA intron (ENSMUSG00000036377.19, intron 1 of 11) protein_coding-intron (ENSMUSG00000036377.19, intron 1 of 4) -29559 ENSMUSG00000103529.1 ENSMUSG00000103529 ENSMUST00000194526 A730089K16Rik TEC Interval_36497 chr12 46455544 46457243 + 0 NA Intergenic Intergenic 22934 ENSMUSG00000112811.1 ENSMUSG00000112811 ENSMUST00000220115 Gm7422 processed_pseudogene Interval_36698 chr12 52241004 52241229 + 0 NA intron (ENSMUSG00000035142.18, intron 3 of 3) protein_coding-intron (ENSMUSG00000035142.18, intron 6 of 10) 65029 ENSMUSG00000035142.18 ENSMUSG00000035142 ENSMUST00000162111 Nubpl protein_coding Interval_123890 chr5 36335320 36335539 + 0 NA intron (ENSMUSG00000029093.14, intron 1 of 4) protein_coding-intron (ENSMUSG00000029093.14, intron 1 of 26) 30489 ENSMUSG00000029093.14 ENSMUSG00000029093 ENSMUST00000141508 Sorcs2 protein_coding Interval_128202 chr5 111672572 111672770 + 0 NA Intergenic Intergenic -61253 ENSMUSG00000096949.1 ENSMUSG00000096949 ENSMUST00000180627 Gm26897 protein_coding Interval_122824 chr5 25801684 25801924 + 0 NA intron (ENSMUSG00000056367.14, intron 2 of 11) protein_coding-intron (ENSMUSG00000056367.14, intron 2 of 11) 41765 ENSMUSG00000056367.14 ENSMUSG00000056367 ENSMUST00000198693 Actr3b protein_coding Interval_7098 chr1 125729205 125730922 + 0 NA intron (ENSMUSG00000026343.6, intron 1 of 1) protein_coding-intron (ENSMUSG00000026343.6, intron 1 of 1) -61447 ENSMUSG00000101015.1 ENSMUSG00000101015 ENSMUST00000191239 Gm18444 processed_pseudogene Interval_172599 chrX 38042427 38043179 + 0 NA intron (ENSMUSG00000098348.7, intron 1 of 4) protein_coding-intron (ENSMUSG00000098348.7, intron 1 of 4) -2994 ENSMUSG00000098348.7 ENSMUSG00000098348 ENSMUST00000184977 Btg1c protein_coding Interval_117849 chr4 126602070 126602754 + 0 NA Intergenic Intergenic -7442 ENSMUSG00000073755.4 ENSMUSG00000073755 ENSMUST00000164362 5730409E04Rik protein_coding Interval_141175 chr6 125422252 125425621 + 0 NA Intergenic Intergenic 39088 ENSMUSG00000030342.8 ENSMUSG00000030342 ENSMUST00000140024 Cd9 protein_coding Interval_79773 chr18 35047570 35048005 + 0 NA intron (ENSMUSG00000118380.1, intron 3 of 3) processed_transcript-intron (ENSMUSG00000118380.1, intron 4 of 5) 39836 ENSMUSG00000117727.1 ENSMUSG00000117727 ENSMUST00000238134 Gm3587 lincRNA Interval_63426 chr15 100997158 100997776 + 0 NA intron (ENSMUSG00000023033.14, intron 9 of 9) protein_coding-intron (ENSMUSG00000023033.14, intron 12 of 26) 27345 ENSMUSG00000023033.14 ENSMUSG00000023033 ENSMUST00000201246 Scn8a protein_coding Interval_145952 chr7 42599697 42600784 + 0 NA Intergenic Intergenic 5025 ENSMUSG00000076180.1 ENSMUSG00000076180 ENSMUST00000102225 Gm24938 miRNA Interval_113238 chr4 51596868 51597468 + 0 NA Intergenic Intergenic 56421 ENSMUSG00000087958.1 ENSMUSG00000087958 ENSMUST00000157333 Gm22563 misc_RNA Interval_138067 chr6 84938209 84939012 + 0 NA intron (ENSMUSG00000033769.16, intron 5 of 13) protein_coding-intron (ENSMUSG00000033769.16, intron 6 of 16) 17487 ENSMUSG00000108012.1 ENSMUSG00000108012 ENSMUST00000204154 Gm44012 antisense Interval_86609 chr19 42026242 42026811 + 0 NA intron (ENSMUSG00000025171.2, intron 1 of 2) protein_coding-intron (ENSMUSG00000025171.2, intron 1 of 2) 9377 ENSMUSG00000025171.2 ENSMUSG00000025171 ENSMUST00000237817 Ubtd1 protein_coding Interval_12115 chr1 189844363 189844639 + 0 NA promoter-TSS (ENSMUSG00000026604.17) protein_coding-promoter-TSS (ENSMUSG00000026604.17) -542 ENSMUSG00000026604.17 ENSMUSG00000026604 ENSMUST00000148129 Ptpn14 protein_coding Interval_102394 chr3 23427019 23427611 + 0 NA Intergenic Intergenic -33735 ENSMUSG00000102203.1 ENSMUSG00000102203 ENSMUST00000194267 4930412E21Rik lincRNA Interval_69193 chr16 91241490 91242301 + 0 NA Intergenic Intergenic 16438 ENSMUSG00000039830.9 ENSMUSG00000039830 ENSMUST00000035608 Olig2 protein_coding Interval_24482 chr11 33588038 33588957 + 0 NA Intergenic Intergenic -9538 ENSMUSG00000020159.8 ENSMUSG00000020159 ENSMUST00000135350 Gabrp protein_coding Interval_90783 chr2 32586701 32587599 + 0 NA promoter-TSS (ENSMUSG00000079442.12) protein_coding-promoter-TSS (ENSMUSG00000079442.12) -431 ENSMUSG00000079442.12 ENSMUSG00000079442 ENSMUST00000146557 St6galnac4 protein_coding Interval_40462 chr12 105025437 105025701 + 0 NA intron (ENSMUSG00000113995.1, intron 2 of 3) lincRNA-intron (ENSMUSG00000113995.1, intron 2 of 3) 2394 ENSMUSG00000113125.1 ENSMUSG00000113125 ENSMUST00000222037 Gm47650 processed_pseudogene Interval_29853 chr11 87322270 87322754 + 0 NA intron (ENSMUSG00000046442.4, intron 1 of 3) protein_coding-intron (ENSMUSG00000046442.4, intron 1 of 6) -3713 ENSMUSG00000088001.1 ENSMUSG00000088001 ENSMUST00000157376 Gm22883 snRNA Interval_3022 chr1 52267846 52268110 + 0 NA Intergenic Intergenic 21117 ENSMUSG00000099648.1 ENSMUSG00000099648 ENSMUST00000185256 Gm5975 processed_pseudogene Interval_81566 chr18 61736955 61737642 + 0 NA intron (ENSMUSG00000033032.15, intron 12 of 15) protein_coding-intron (ENSMUSG00000033032.15, intron 15 of 18) 10865 ENSMUSG00000098702.1 ENSMUSG00000098702 ENSMUST00000184530 1500015A07Rik antisense Interval_42393 chr13 12605941 12606464 + 0 NA TTS (ENSMUSG00000057069.7) protein_coding-TTS (ENSMUSG00000057069.7) 13647 ENSMUSG00000097715.2 ENSMUSG00000097715 ENSMUST00000222447 Gpr137b-ps transcribed_unprocessed_pseudogene Interval_22732 chr11 14127472 14128702 + 0 NA intron (ENSMUSG00000085452.1, intron 2 of 3) lincRNA-intron (ENSMUSG00000085452.1, intron 2 of 3) -33992 ENSMUSG00000081631.1 ENSMUSG00000081631 ENSMUST00000121451 Gm12005 processed_pseudogene Interval_109502 chr3 142990696 142990897 + 0 NA Intergenic Intergenic -26864 ENSMUSG00000105652.1 ENSMUSG00000105652 ENSMUST00000197683 4930519L02Rik lincRNA Interval_26929 chr11 61637113 61637858 + 0 NA Intergenic Intergenic -31561 ENSMUSG00000004837.2 ENSMUSG00000004837 ENSMUST00000155380 Grap protein_coding Interval_46619 chr13 67636942 67638359 + 0 NA exon (ENSMUSG00000021510.11, exon 1 of 4) protein_coding-exon (ENSMUSG00000021510.11, exon 1 of 4) 103 ENSMUSG00000114923.1 ENSMUSG00000114923 ENSMUST00000225627 Gm49345 protein_coding Interval_4132 chr1 69875201 69876125 + 0 NA intron (ENSMUSG00000053153.14, intron 7 of 12) protein_coding-intron (ENSMUSG00000053153.14, intron 7 of 16) 46084 ENSMUSG00000089345.1 ENSMUSG00000089345 ENSMUST00000158720 Gm22665 misc_RNA Interval_168704 chr9 86147416 86147782 + 0 NA Intergenic Intergenic 28416 ENSMUSG00000111418.1 ENSMUSG00000111418 ENSMUST00000216119 Gm18016 processed_pseudogene Interval_171169 chr9 114924333 114925363 + 0 NA intron (ENSMUSG00000050627.13, intron 1 of 7) protein_coding-intron (ENSMUSG00000050627.13, intron 1 of 6) 9139 ENSMUSG00000050627.13 ENSMUSG00000050627 ENSMUST00000146266 Gpd1l protein_coding Interval_135911 chr6 48621920 48622763 + 0 NA promoter-TSS (ENSMUSG00000107640.1) antisense-promoter-TSS (ENSMUSG00000107640.1) 16 ENSMUSG00000107640.1 ENSMUSG00000107640 ENSMUST00000203998 Gm38804 antisense Interval_73851 chr17 44613619 44614517 + 0 NA intron (ENSMUSG00000039153.17, intron 3 of 4) protein_coding-intron (ENSMUSG00000039153.17, intron 6 of 7) 27075 ENSMUSG00000070209.1 ENSMUSG00000070209 ENSMUST00000093699 n-R5s27 rRNA Interval_47275 chr13 80428882 80429684 + 0 NA Intergenic Intergenic -63726 ENSMUSG00000114528.1 ENSMUSG00000114528 ENSMUST00000223876 Gm46388 processed_pseudogene Interval_127823 chr5 108042105 108044780 + 0 NA Intergenic Intergenic 12474 ENSMUSG00000096920.1 ENSMUSG00000096920 ENSMUST00000180714 Rps19-ps8 processed_pseudogene Interval_130801 chr5 130718457 130718977 + 0 NA intron (ENSMUSG00000060371.12, intron 4 of 5) protein_coding-intron (ENSMUSG00000060371.12, intron 5 of 6) -63984 ENSMUSG00000088972.2 ENSMUSG00000088972 ENSMUST00000158347 Gm23761 snRNA Interval_129379 chr5 119628400 119629166 + 0 NA intron (ENSMUSG00000085708.1, intron 1 of 3) antisense-intron (ENSMUSG00000087516.7, intron 2 of 2) -1478 ENSMUSG00000087516.7 ENSMUSG00000087516 ENSMUST00000129108 Tbx3os1 antisense Interval_27453 chr11 67921207 67923023 + 0 NA promoter-TSS (ENSMUSG00000020905.11) protein_coding-promoter-TSS (ENSMUSG00000020905.11) 611 ENSMUSG00000055134.5 ENSMUSG00000055134 ENSMUST00000068548 9130017K11Rik processed_transcript Interval_5312 chr1 87475044 87476238 + 0 NA TTS (ENSMUSG00000026258.5) protein_coding-TTS (ENSMUSG00000026258.5) 3102 ENSMUSG00000026258.5 ENSMUSG00000026258 ENSMUST00000191095 Snorc protein_coding Interval_154545 chr8 19273483 19273814 + 0 NA Intergenic Intergenic 6198 ENSMUSG00000081901.1 ENSMUSG00000081901 ENSMUST00000119160 Gm15357 unprocessed_pseudogene Interval_159737 chr8 99681847 99682016 + 0 NA intron (ENSMUSG00000052479.5, intron 4 of 4) lincRNA-intron (ENSMUSG00000052479.5, intron 4 of 4) 17912 ENSMUSG00000083586.2 ENSMUSG00000083586 ENSMUST00000118240 Gm8688 unprocessed_pseudogene Interval_7720 chr1 133265332 133265832 + 0 NA TTS (ENSMUSG00000041757.17) protein_coding-TTS (ENSMUSG00000041757.17) 4226 ENSMUSG00000101693.1 ENSMUSG00000101693 ENSMUST00000189590 Gm19461 antisense Interval_54182 chr14 66042297 66043238 + 0 NA intron (ENSMUSG00000022039.6, intron 14 of 20) protein_coding-intron (ENSMUSG00000022039.6, intron 14 of 20) -2313 ENSMUSG00000068165.3 ENSMUSG00000068165 ENSMUST00000089275 Gm10233 processed_pseudogene Interval_135303 chr6 38180829 38181037 + 0 NA intron (ENSMUSG00000063455.16, intron 6 of 19) protein_coding-intron (ENSMUSG00000063455.16, intron 6 of 19) 62550 ENSMUSG00000087924.1 ENSMUSG00000087924 ENSMUST00000157299 Gm23231 snRNA Interval_166334 chr9 58418898 58419141 + 0 NA Intergenic Intergenic -36103 ENSMUSG00000097651.2 ENSMUSG00000097651 ENSMUST00000181967 4930461G14Rik lincRNA Interval_165121 chr9 44666460 44666823 + 0 NA Intergenic Intergenic -1925 ENSMUSG00000111326.1 ENSMUSG00000111326 ENSMUST00000213963 Gm3953 processed_pseudogene Interval_55207 chr14 79326840 79327474 + 0 NA exon (ENSMUSG00000022020.15, exon 20 of 20) protein_coding-exon (ENSMUSG00000022020.15, exon 20 of 20) 23664 ENSMUSG00000022020.15 ENSMUSG00000022020 ENSMUST00000165337 Naa16 protein_coding Interval_66197 chr16 32276225 32278520 + 0 NA promoter-TSS (ENSMUSG00000014074.17) protein_coding-promoter-TSS (ENSMUSG00000014074.17) -89 ENSMUSG00000014074.17 ENSMUSG00000014074 ENSMUST00000171474 Rnf168 protein_coding Interval_107329 chr3 105907661 105908562 + 0 NA exon (ENSMUSG00000000562.5, exon 2 of 2) protein_coding-exon (ENSMUSG00000000562.5, exon 2 of 2) 3416 ENSMUSG00000000562.5 ENSMUSG00000000562 ENSMUST00000197613 Adora3 protein_coding Interval_140174 chr6 115007076 115008250 + 0 NA TTS (ENSMUSG00000030316.13) protein_coding-TTS (ENSMUSG00000030316.13) 30192 ENSMUSG00000030316.13 ENSMUSG00000030316 ENSMUST00000144445 Tamm41 protein_coding Interval_129819 chr5 122524466 122525405 + 0 NA Intergenic Intergenic 18146 ENSMUSG00000088583.1 ENSMUSG00000088583 ENSMUST00000157958 Gm22965 snRNA Interval_98620 chr2 153599996 153601581 + 0 NA Intergenic Intergenic 31943 ENSMUSG00000056941.17 ENSMUSG00000056941 ENSMUST00000109782 Commd7 protein_coding Interval_122911 chr5 27261361 27263004 + 0 NA exon (ENSMUSG00000061576.15, exon 1 of 26) protein_coding-exon (ENSMUSG00000061576.15, exon 1 of 26) 43997 ENSMUSG00000106537.1 ENSMUSG00000106537 ENSMUST00000200263 Gm43502 TEC Interval_173299 chrX 77528283 77528661 + 0 NA intron (ENSMUSG00000025246.13, intron 1 of 15) protein_coding-intron (ENSMUSG00000025246.13, intron 1 of 15) 17258 ENSMUSG00000025246.13 ENSMUSG00000025246 ENSMUST00000133893 Tbl1x protein_coding Interval_119658 chr4 139052481 139052908 + 0 NA intron (ENSMUSG00000041143.16, intron 15 of 16) protein_coding-intron (ENSMUSG00000041143.16, intron 14 of 15) 22876 ENSMUSG00000028747.10 ENSMUSG00000028747 ENSMUST00000068036 Htr6 protein_coding Interval_97816 chr2 144245348 144249838 + 0 NA Intergenic Intergenic 4352 ENSMUSG00000085127.1 ENSMUSG00000085127 ENSMUST00000146746 4930444E06Rik antisense Interval_118432 chr4 131479092 131479401 + 0 NA Intergenic Intergenic -7951 ENSMUSG00000078531.3 ENSMUSG00000078531 ENSMUST00000149942 Gm831 lincRNA Interval_52882 chr14 51789141 51789461 + 0 NA Intergenic Intergenic 4452 ENSMUSG00000092107.1 ENSMUSG00000092107 ENSMUST00000166834 Ear-ps4 unprocessed_pseudogene Interval_34281 chr11 121951397 121952391 + 0 NA Intergenic Intergenic 18791 ENSMUSG00000082831.1 ENSMUSG00000082831 ENSMUST00000122407 Gm12591 unprocessed_pseudogene Interval_31445 chr11 100719757 100720347 + 0 NA TTS (ENSMUSG00000019173.11) protein_coding-TTS (ENSMUSG00000019173.11) 6202 ENSMUSG00000017832.2 ENSMUSG00000017832 ENSMUST00000017976 Hspb9 protein_coding Interval_9524 chr1 158508803 158509595 + 0 NA promoter-TSS (ENSMUSG00000026587.15) protein_coding-promoter-TSS (ENSMUSG00000026587.15) 3574 ENSMUSG00000070103.2 ENSMUSG00000070103 ENSMUST00000093595 Mir488 miRNA Interval_76302 chr17 78912648 78914340 + 0 NA Intergenic Intergenic -3206 ENSMUSG00000062691.10 ENSMUSG00000062691 ENSMUST00000192288 Cebpzos protein_coding Interval_28185 chr11 73832469 73833025 + 0 NA Intergenic Intergenic 6794 ENSMUSG00000081698.1 ENSMUSG00000081698 ENSMUST00000120829 Gm12329 processed_pseudogene Interval_144489 chr7 25422088 25423295 + 0 NA exon (ENSMUSG00000108503.1, exon 1 of 1) processed_pseudogene-exon (ENSMUSG00000108503.1, exon 1 of 1) 101 ENSMUSG00000108503.1 ENSMUSG00000108503 ENSMUST00000206478 Gm20949 processed_pseudogene Interval_51863 chr14 33098806 33099616 + 0 NA intron (ENSMUSG00000051506.17, intron 23 of 61) protein_coding-intron (ENSMUSG00000051506.17, intron 22 of 58) 86297 ENSMUSG00000051506.17 ENSMUSG00000051506 ENSMUST00000159606 Wdfy4 protein_coding Interval_53754 chr14 61529224 61529891 + 0 NA Intergenic Intergenic -14170 ENSMUSG00000115802.1 ENSMUSG00000115802 ENSMUST00000226286 Vmn1r-ps136 unprocessed_pseudogene Interval_151167 chr7 118948710 118949101 + 0 NA intron (ENSMUSG00000073856.11, intron 7 of 7) protein_coding-intron (ENSMUSG00000073856.11, intron 8 of 8) 20781 ENSMUSG00000109517.1 ENSMUSG00000109517 ENSMUST00000208287 Gm44763 antisense Interval_20469 chr10 117792159 117794101 + 0 NA promoter-TSS (ENSMUSG00000052798.13) protein_coding-promoter-TSS (ENSMUSG00000052798.13) -479 ENSMUSG00000052798.13 ENSMUSG00000052798 ENSMUST00000220203 Nup107 protein_coding Interval_40261 chr12 102832538 102833101 + 0 NA intron (ENSMUSG00000041702.7, intron 4 of 11) protein_coding-intron (ENSMUSG00000041702.7, intron 3 of 10) -5289 ENSMUSG00000113907.1 ENSMUSG00000113907 ENSMUST00000220987 Gm47167 antisense Interval_78529 chr18 14473287 14473617 + 0 NA Intergenic Intergenic -18553 ENSMUSG00000117607.1 ENSMUSG00000117607 ENSMUST00000234589 Gm50098 processed_pseudogene Interval_935 chr1 13291029 13291729 + 0 NA promoter-TSS (ENSMUSG00000102639.1) TEC-promoter-TSS (ENSMUSG00000102639.1) -873 ENSMUSG00000102639.1 ENSMUSG00000102639 ENSMUST00000194484 Gm38223 TEC Interval_130347 chr5 126392540 126392763 + 0 NA Intergenic Intergenic -2997 ENSMUSG00000094875.1 ENSMUSG00000094875 ENSMUST00000178061 Gm23151 snRNA Interval_158707 chr8 85456314 85457325 + 0 NA Intergenic Intergenic -24005 ENSMUSG00000036934.9 ENSMUSG00000036934 ENSMUST00000210556 4921524J17Rik protein_coding Interval_27289 chr11 65386353 65387542 + 0 NA Intergenic Intergenic -21149 ENSMUSG00000085162.7 ENSMUSG00000085162 ENSMUST00000130362 Gm12295 lincRNA Interval_67431 chr16 48606218 48607155 + 0 NA intron (ENSMUSG00000022652.7, intron 1 of 5) protein_coding-intron (ENSMUSG00000022652.7, intron 20 of 26) 127054 ENSMUSG00000022652.7 ENSMUSG00000022652 ENSMUST00000232195 Morc1 protein_coding Interval_47217 chr13 78186454 78186931 + 0 NA Intergenic Intergenic -3524 ENSMUSG00000114401.1 ENSMUSG00000114401 ENSMUST00000225211 Gm38604 antisense Interval_88675 chr2 9594022 9594588 + 0 NA intron (ENSMUSG00000079603.3, intron 1 of 1) lincRNA-intron (ENSMUSG00000079603.3, intron 1 of 1) 3538 ENSMUSG00000079603.3 ENSMUSG00000079603 ENSMUST00000128180 Gm13218 lincRNA Interval_88411 chr2 4904930 4906739 + 0 NA TTS (ENSMUSG00000026662.13) protein_coding-TTS (ENSMUSG00000026662.13) -13246 ENSMUSG00000026664.7 ENSMUSG00000026664 ENSMUST00000128738 Phyh protein_coding Interval_164865 chr9 42591327 42591521 + 0 NA exon (ENSMUSG00000032017.14, exon 11 of 19) protein_coding-exon (ENSMUSG00000032017.14, exon 11 of 19) -70593 ENSMUSG00000093745.1 ENSMUSG00000093745 ENSMUST00000176676 Gm24420 misc_RNA Interval_162705 chr9 7926129 7926921 + 0 NA Intergenic Intergenic -39313 ENSMUSG00000092185.1 ENSMUSG00000092185 ENSMUST00000174760 Gm20416 processed_transcript Interval_137477 chr6 72677241 72678908 + 0 NA intron (ENSMUSG00000055799.13, intron 2 of 5) protein_coding-intron (ENSMUSG00000055799.13, intron 3 of 11) -6670 ENSMUSG00000055799.13 ENSMUSG00000055799 ENSMUST00000182651 Tcf7l1 protein_coding Interval_103366 chr3 40487307 40487893 + 0 NA Intergenic Intergenic 22174 ENSMUSG00000037884.6 ENSMUSG00000037884 ENSMUST00000202778 1700017G19Rik lincRNA Interval_166513 chr9 60275568 60276757 + 0 NA intron (ENSMUSG00000032289.15, intron 5 of 16) protein_coding-intron (ENSMUSG00000032289.15, intron 6 of 17) -57980 ENSMUSG00000111296.1 ENSMUSG00000111296 ENSMUST00000214235 2010001M07Rik antisense Interval_13743 chr10 21706711 21707080 + 0 NA intron (ENSMUSG00000056716.10, intron 2 of 2) lincRNA-intron (ENSMUSG00000056716.10, intron 2 of 2) 20484 ENSMUSG00000056716.10 ENSMUSG00000056716 ENSMUST00000071008 Gm5420 lincRNA Interval_166597 chr9 61207256 61208132 + 0 NA intron (ENSMUSG00000111449.1, intron 2 of 3) lincRNA-intron (ENSMUSG00000111449.1, intron 2 of 3) 1015 ENSMUSG00000111449.1 ENSMUSG00000111449 ENSMUST00000214812 Gm34105 lincRNA Interval_82761 chr18 76858689 76860795 + 0 NA exon (ENSMUSG00000091519.1, exon 2 of 9) protein_coding-exon (ENSMUSG00000091519.1, exon 2 of 9) 3337 ENSMUSG00000091519.1 ENSMUSG00000091519 ENSMUST00000166956 Skor2 protein_coding Interval_159315 chr8 93430602 93431177 + 0 NA TTS (ENSMUSG00000110718.1) antisense-TTS (ENSMUSG00000110718.1) -3546 ENSMUSG00000110670.1 ENSMUSG00000110670 ENSMUST00000212825 Gm30132 lincRNA Interval_144526 chr7 25699532 25701026 + 0 NA intron (ENSMUSG00000002603.15, intron 5 of 6) protein_coding-intron (ENSMUSG00000002603.15, intron 5 of 6) 12131 ENSMUSG00000002603.15 ENSMUSG00000002603 ENSMUST00000171757 Tgfb1 protein_coding Interval_140652 chr6 120316285 120317075 + 0 NA Intergenic Intergenic -22121 ENSMUSG00000041372.10 ENSMUSG00000041372 ENSMUST00000212457 B4galnt3 protein_coding Interval_65933 chr16 30325019 30325563 + 0 NA intron (ENSMUSG00000022533.14, intron 3 of 4) protein_coding-intron (ENSMUSG00000022533.14, intron 31 of 32) 8557 ENSMUSG00000022533.14 ENSMUSG00000022533 ENSMUST00000136065 Atp13a3 protein_coding Interval_142336 chr6 140689413 140689779 + 0 NA Intergenic Intergenic -39688 ENSMUSG00000079264.1 ENSMUSG00000079264 ENSMUST00000111844 Gm11077 protein_coding Interval_147130 chr7 63671123 63672450 + 0 NA intron (ENSMUSG00000033510.14, intron 1 of 10) protein_coding-intron (ENSMUSG00000033510.14, intron 4 of 13) 20971 ENSMUSG00000033510.14 ENSMUSG00000033510 ENSMUST00000177511 Otud7a protein_coding Interval_117952 chr4 127301195 127301680 + 0 NA Intergenic Intergenic -3972 ENSMUSG00000082047.1 ENSMUSG00000082047 ENSMUST00000119406 Gm12948 processed_pseudogene Interval_109457 chr3 142645906 142646106 + 0 NA Intergenic Intergenic -12942 ENSMUSG00000105317.2 ENSMUSG00000105317 ENSMUST00000198870 Gbp2-ps unprocessed_pseudogene Interval_38045 chr12 74889251 74889895 + 0 NA Intergenic Intergenic 46835 ENSMUSG00000113974.1 ENSMUSG00000113974 ENSMUST00000221473 4930442G10Rik lincRNA Interval_103070 chr3 34912571 34913458 + 0 NA Intergenic Intergenic 9637 ENSMUSG00000098862.1 ENSMUSG00000098862 ENSMUST00000183357 Mir6378 miRNA Interval_157972 chr8 77440338 77440737 + 0 NA intron (ENSMUSG00000037148.8, intron 3 of 21) protein_coding-intron (ENSMUSG00000037148.8, intron 3 of 22) -68021 ENSMUSG00000109873.1 ENSMUSG00000109873 ENSMUST00000209499 Gm45407 TEC Interval_149516 chr7 99290524 99290781 + 0 NA intron (ENSMUSG00000055407.14, intron 1 of 3) protein_coding-intron (ENSMUSG00000055407.14, intron 1 of 3) 21520 ENSMUSG00000055407.14 ENSMUSG00000055407 ENSMUST00000209094 Map6 protein_coding Interval_5171 chr1 86225225 86226818 + 0 NA intron (ENSMUSG00000062590.13, intron 7 of 8) protein_coding-intron (ENSMUSG00000062590.13, intron 19 of 24) 71222 ENSMUSG00000062590.13 ENSMUSG00000062590 ENSMUST00000126579 Armc9 protein_coding Interval_42428 chr13 13455914 13456236 + 0 NA intron (ENSMUSG00000005397.8, intron 1 of 13) protein_coding-intron (ENSMUSG00000005397.8, intron 1 of 19) 26330 ENSMUSG00000113380.1 ENSMUSG00000113380 ENSMUST00000220813 Gm48682 antisense Interval_68338 chr16 73459294 73459604 + 0 NA Intergenic Intergenic 5374 ENSMUSG00000116746.1 ENSMUSG00000116746 ENSMUST00000232227 Gm18825 processed_pseudogene Interval_119163 chr4 135931969 135932342 + 0 NA promoter-TSS (ENSMUSG00000028673.10) protein_coding-promoter-TSS (ENSMUSG00000028673.10) 2319 ENSMUSG00000028673.10 ENSMUSG00000028673 ENSMUST00000142111 Fuca1 protein_coding Interval_62556 chr15 94615403 94615919 + 0 NA Intergenic Intergenic -13571 ENSMUSG00000063296.5 ENSMUSG00000063296 ENSMUST00000080141 Tmem117 protein_coding Interval_23581 chr11 23553141 23553348 + 0 NA Intergenic Intergenic 5598 ENSMUSG00000085415.1 ENSMUSG00000085415 ENSMUST00000125204 Selenok-ps1 processed_transcript Interval_120262 chr4 145018694 145018972 + 0 NA intron (ENSMUSG00000020220.16, intron 48 of 51) protein_coding-intron (ENSMUSG00000020220.16, intron 64 of 67) -59985 ENSMUSG00000103911.1 ENSMUSG00000103911 ENSMUST00000193467 Gm38074 TEC Interval_62179 chr15 88617633 88618257 + 0 NA Intergenic Intergenic 17643 ENSMUSG00000054117.8 ENSMUSG00000054117 ENSMUST00000066949 Zdhhc25 protein_coding Interval_5395 chr1 88465854 88468608 + 0 NA Intergenic Intergenic -4623 ENSMUSG00000099553.1 ENSMUSG00000099553 ENSMUST00000190783 Gm29538 lincRNA Interval_170344 chr9 107301828 107302185 + 0 NA promoter-TSS (ENSMUSG00000090570.1) antisense-promoter-TSS (ENSMUSG00000090570.1) -168 ENSMUSG00000090570.1 ENSMUSG00000090570 ENSMUST00000163196 Gm17041 antisense Interval_143444 chr7 6851637 6851917 + 0 NA intron (ENSMUSG00000051527.11, intron 2 of 7) protein_coding-intron (ENSMUSG00000051527.11, intron 2 of 7) -11656 ENSMUSG00000092875.2 ENSMUSG00000092875 ENSMUST00000175134 Gm22649 misc_RNA Interval_86721 chr19 43134263 43134847 + 0 NA intron (ENSMUSG00000074852.4, intron 3 of 11) protein_coding-intron (ENSMUSG00000074852.4, intron 3 of 11) 26347 ENSMUSG00000089377.1 ENSMUSG00000089377 ENSMUST00000158752 Gm22135 rRNA Interval_95285 chr2 105666477 105669986 + 0 NA promoter-TSS (ENSMUSG00000027168.21) protein_coding-promoter-TSS (ENSMUSG00000027168.21) 2099 ENSMUSG00000086029.7 ENSMUSG00000086029 ENSMUST00000126948 Pax6os1 antisense Interval_159566 chr8 95487839 95489303 + 0 NA promoter-TSS (ENSMUSG00000046707.9) protein_coding-promoter-TSS (ENSMUSG00000046707.9) -992 ENSMUSG00000046707.9 ENSMUSG00000046707 ENSMUST00000212615 Csnk2a2 protein_coding Interval_154577 chr8 21001418 21001700 + 0 NA Intergenic Intergenic -23986 ENSMUSG00000074447.2 ENSMUSG00000074447 ENSMUST00000076754 Defa21 protein_coding Interval_139303 chr6 98116164 98116721 + 0 NA Intergenic Intergenic -5354 ENSMUSG00000107902.1 ENSMUSG00000107902 ENSMUST00000205146 Gm32592 antisense Interval_13590 chr10 19997445 19997651 + 0 NA intron (ENSMUSG00000071369.11, intron 1 of 3) protein_coding-intron (ENSMUSG00000071369.11, intron 1 of 29) -89897 ENSMUSG00000020003.16 ENSMUSG00000020003 ENSMUST00000214951 Pex7 protein_coding Interval_3192 chr1 54609765 54610325 + 0 NA Intergenic Intergenic 38568 ENSMUSG00000052331.14 ENSMUSG00000052331 ENSMUST00000177679 Ankrd44 protein_coding Interval_72492 chr17 30157713 30158993 + 0 NA intron (ENSMUSG00000044477.12, intron 2 of 3) protein_coding-intron (ENSMUSG00000044477.12, intron 3 of 4) -7153 ENSMUSG00000117947.1 ENSMUSG00000117947 ENSMUST00000237534 Gm50226 TEC Interval_132191 chr5 143247224 143247770 + 0 NA exon (ENSMUSG00000029587.16, exon 5 of 5) protein_coding-exon (ENSMUSG00000029587.16, exon 5 of 5) 8703 ENSMUSG00000046658.16 ENSMUSG00000046658 ENSMUST00000051665 Zfp316 protein_coding Interval_84504 chr19 11937958 11938311 + 0 NA intron (ENSMUSG00000046139.8, intron 16 of 19) protein_coding-intron (ENSMUSG00000046139.8, intron 15 of 18) -4506 ENSMUSG00000077227.1 ENSMUSG00000077227 ENSMUST00000104039 Gm22272 snoRNA Interval_57419 chr15 10672724 10673184 + 0 NA intron (ENSMUSG00000022246.14, intron 2 of 16) protein_coding-intron (ENSMUSG00000022246.14, intron 2 of 17) 41144 ENSMUSG00000022246.14 ENSMUSG00000022246 ENSMUST00000227366 Rai14 protein_coding Interval_42324 chr13 12099962 12100553 + 0 NA intron (ENSMUSG00000021313.16, intron 1 of 2) protein_coding-intron (ENSMUSG00000021313.16, intron 1 of 104) -48202 ENSMUSG00000112947.1 ENSMUSG00000112947 ENSMUST00000220599 Gm47493 TEC Interval_170973 chr9 113421430 113421781 + 0 NA exon (ENSMUSG00000111199.1, exon 2 of 2) lincRNA-exon (ENSMUSG00000111199.1, exon 2 of 2) 1494 ENSMUSG00000111199.1 ENSMUSG00000111199 ENSMUST00000216389 Gm47875 lincRNA Interval_128924 chr5 116126554 116126949 + 0 NA intron (ENSMUSG00000043913.14, intron 13 of 13) protein_coding-intron (ENSMUSG00000043913.14, intron 13 of 13) 3137 ENSMUSG00000086655.1 ENSMUSG00000086655 ENSMUST00000127792 C330018A13Rik antisense Interval_94277 chr2 87393317 87395819 + 0 NA TTS (ENSMUSG00000082028.1) processed_pseudogene-TTS (ENSMUSG00000082028.1) 1085 ENSMUSG00000082028.1 ENSMUSG00000082028 ENSMUST00000118646 Gm1826 processed_pseudogene Interval_98112 chr2 148171518 148171793 + 0 NA Intergenic Intergenic 20505 ENSMUSG00000089458.1 ENSMUSG00000089458 ENSMUST00000158833 Gm24221 snoRNA Interval_130120 chr5 124397160 124397624 + 0 NA promoter-TSS (ENSMUSG00000038095.15) protein_coding-promoter-TSS (ENSMUSG00000038095.15) 8337 ENSMUSG00000038095.15 ENSMUSG00000038095 ENSMUST00000197974 Sbno1 protein_coding Interval_157200 chr8 67597434 67597704 + 0 NA Intergenic Intergenic -12379 ENSMUSG00000110452.1 ENSMUSG00000110452 ENSMUST00000211834 Gm36247 processed_pseudogene Interval_22050 chr11 6000314 6000788 + 0 NA promoter-TSS (ENSMUSG00000057897.14) protein_coding-promoter-TSS (ENSMUSG00000057897.14) -16413 ENSMUSG00000057897.14 ENSMUSG00000057897 ENSMUST00000129098 Camk2b protein_coding Interval_111747 chr4 27173713 27173961 + 0 NA Intergenic Intergenic -47328 ENSMUSG00000083447.1 ENSMUSG00000083447 ENSMUST00000120562 Gm11904 processed_pseudogene Interval_127983 chr5 110082676 110083830 + 0 NA intron (ENSMUSG00000109771.1, intron 1 of 3) protein_coding-intron (ENSMUSG00000109771.1, intron 1 of 3) -10740 ENSMUSG00000090963.2 ENSMUSG00000090963 ENSMUST00000167969 Gm17655 protein_coding Interval_18560 chr10 87685481 87687865 + 0 NA Intergenic Intergenic -1905 ENSMUSG00000112536.1 ENSMUSG00000112536 ENSMUST00000218613 Gm48195 processed_pseudogene Interval_52996 chr14 53058203 53060246 + 0 NA Intergenic Intergenic 11937 ENSMUSG00000076796.1 ENSMUSG00000076796 ENSMUST00000103606 Trav16d-dv11 TR_V_gene Interval_104088 chr3 58511552 58512248 + 0 NA Intergenic Intergenic 13992 ENSMUSG00000027808.8 ENSMUSG00000027808 ENSMUST00000029385 Serp1 protein_coding Interval_129777 chr5 122284178 122285390 + 0 NA exon (ENSMUSG00000038582.15, exon 1 of 6) protein_coding-exon (ENSMUSG00000038582.15, exon 1 of 6) -10988 ENSMUSG00000038582.15 ENSMUSG00000038582 ENSMUST00000119015 Pptc7 protein_coding Interval_121900 chr5 9314981 9315233 + 0 NA intron (ENSMUSG00000056004.16, intron 1 of 19) protein_coding-intron (ENSMUSG00000056004.16, intron 1 of 21) -38652 ENSMUSG00000086115.1 ENSMUSG00000086115 ENSMUST00000132957 Gm15733 processed_pseudogene Interval_49130 chr13 108315931 108317031 + 0 NA promoter-TSS (ENSMUSG00000090358.1) processed_transcript-promoter-TSS (ENSMUSG00000090358.1) -208 ENSMUSG00000090358.1 ENSMUSG00000090358 ENSMUST00000164299 Gm2822 processed_transcript Interval_9307 chr1 156072073 156072376 + 0 NA Intergenic Intergenic 36452 ENSMUSG00000050565.16 ENSMUSG00000050565 ENSMUST00000125371 Tor1aip2 protein_coding Interval_17782 chr10 80050819 80052302 + 0 NA intron (ENSMUSG00000075706.10, intron 2 of 6) protein_coding-intron (ENSMUSG00000075706.10, intron 2 of 6) -2905 ENSMUSG00000075706.10 ENSMUSG00000075706 ENSMUST00000136081 Gpx4 protein_coding Interval_127685 chr5 106630486 106631211 + 0 NA intron (ENSMUSG00000098302.1, intron 1 of 2) protein_coding-intron (ENSMUSG00000049606.16, intron 5 of 6) 20556 ENSMUSG00000106142.1 ENSMUSG00000106142 ENSMUST00000197908 Gm17937 processed_pseudogene Interval_165601 chr9 50159528 50159978 + 0 NA Intergenic Intergenic 27292 ENSMUSG00000098012.1 ENSMUSG00000098012 ENSMUST00000182240 Gm8907 processed_pseudogene Interval_54239 chr14 66791551 66792350 + 0 NA intron (ENSMUSG00000057913.3, intron 1 of 1) lincRNA-intron (ENSMUSG00000057913.3, intron 1 of 1) 6428 ENSMUSG00000114829.1 ENSMUSG00000114829 ENSMUST00000223821 Gm9130 processed_pseudogene Interval_98954 chr2 156302630 156303044 + 0 NA exon (ENSMUSG00000038116.16, exon 16 of 18) protein_coding-exon (ENSMUSG00000038116.16, exon 16 of 18) 9910 ENSMUSG00000046229.10 ENSMUSG00000046229 ENSMUST00000079125 Scand1 protein_coding Interval_93379 chr2 72514833 72517006 + 0 NA Intergenic Intergenic -29293 ENSMUSG00000081538.1 ENSMUSG00000081538 ENSMUST00000118906 Rps13-ps8 processed_pseudogene Interval_58091 chr15 27810371 27811410 + 0 NA intron (ENSMUSG00000022263.10, intron 32 of 35) protein_coding-intron (ENSMUSG00000022263.10, intron 33 of 56) -45417 ENSMUSG00000115641.1 ENSMUSG00000115641 ENSMUST00000228765 Gm9891 TEC Interval_4391 chr1 73737233 73737647 + 0 NA intron (ENSMUSG00000100301.6, intron 6 of 8) lincRNA-intron (ENSMUSG00000100301.6, intron 6 of 8) 6507 ENSMUSG00000100301.6 ENSMUSG00000100301 ENSMUST00000189514 6030407O03Rik lincRNA Interval_71827 chr17 26370816 26371047 + 0 NA Intergenic Intergenic -43898 ENSMUSG00000034413.14 ENSMUSG00000034413 ENSMUST00000053020 Neurl1b protein_coding Interval_8963 chr1 152778466 152779533 + 0 NA Intergenic Intergenic 10500 ENSMUSG00000008475.13 ENSMUSG00000008475 ENSMUST00000143008 Arpc5 protein_coding Interval_37378 chr12 66048583 66049618 + 0 NA Intergenic Intergenic 80724 ENSMUSG00000113785.1 ENSMUSG00000113785 ENSMUST00000222655 Gm47975 TEC Interval_105879 chr3 89883667 89884382 + 0 NA intron (ENSMUSG00000027947.11, intron 6 of 9) protein_coding-intron (ENSMUSG00000027947.11, intron 6 of 9) -28892 ENSMUSG00000105941.1 ENSMUSG00000105941 ENSMUST00000198429 Gm42809 antisense Interval_64836 chr16 16309759 16310619 + 0 NA TTS (ENSMUSG00000022792.16) protein_coding-TTS (ENSMUSG00000022792.16) 5589 ENSMUSG00000022792.16 ENSMUSG00000022792 ENSMUST00000162734 Yars2 protein_coding Interval_59965 chr15 62295323 62295523 + 0 NA intron (ENSMUSG00000097039.8, intron 5 of 9) lincRNA-intron (ENSMUSG00000097039.8, intron 5 of 9) -76091 ENSMUSG00000101167.1 ENSMUSG00000101167 ENSMUST00000151919 Macroh2a3 processed_pseudogene Interval_153987 chr8 11648435 11650595 + 0 NA Intergenic Intergenic 12233 ENSMUSG00000109810.1 ENSMUSG00000109810 ENSMUST00000209605 Gm45592 TEC Interval_110289 chr3 155962095 155963204 + 0 NA Intergenic Intergenic -13705 ENSMUSG00000104553.1 ENSMUSG00000104553 ENSMUST00000196033 9330178D15Rik lincRNA Interval_34697 chr12 8754634 8754857 + 0 NA Intergenic Intergenic 16436 ENSMUSG00000096940.1 ENSMUSG00000096940 ENSMUST00000181803 Gm4755 bidirectional_promoter_lncRNA Interval_152677 chr7 136142642 136143256 + 0 NA Intergenic Intergenic 30347 ENSMUSG00000110396.1 ENSMUSG00000110396 ENSMUST00000209653 Gm36737 lincRNA Interval_126339 chr5 86822942 86823723 + 0 NA exon (ENSMUSG00000035851.14, exon 1 of 2) protein_coding-exon (ENSMUSG00000035851.14, exon 1 of 2) 16921 ENSMUSG00000035851.14 ENSMUSG00000035851 ENSMUST00000123625 Ythdc1 protein_coding Interval_93774 chr2 76767608 76768320 + 0 NA exon (ENSMUSG00000051747.15, exon 132 of 191) protein_coding-exon (ENSMUSG00000051747.15, exon 132 of 191) 45188 ENSMUSG00000086354.2 ENSMUSG00000086354 ENSMUST00000156809 Gm13938 antisense Interval_35552 chr12 24741377 24742037 + 0 NA Intergenic Intergenic -18518 ENSMUSG00000113062.1 ENSMUSG00000113062 ENSMUST00000221016 Gm48895 processed_pseudogene Interval_105308 chr3 84744412 84746078 + 0 NA intron (ENSMUSG00000102805.5, intron 3 of 9) protein_coding-intron (ENSMUSG00000102805.5, intron 3 of 9) -70521 ENSMUSG00000028086.15 ENSMUSG00000028086 ENSMUST00000029727 Fbxw7 protein_coding Interval_164714 chr9 40767609 40769146 + 0 NA intron (ENSMUSG00000032024.10, intron 2 of 6) protein_coding-intron (ENSMUSG00000032024.10, intron 2 of 6) -6122 ENSMUSG00000111189.1 ENSMUSG00000111189 ENSMUST00000216792 Gm48293 antisense Interval_127358 chr5 103383228 103383639 + 0 NA Intergenic Intergenic -26735 ENSMUSG00000104684.1 ENSMUSG00000104684 ENSMUST00000200007 5430427N15Rik lincRNA Interval_111666 chr4 25589160 25589404 + 0 NA Intergenic Intergenic -22460 ENSMUSG00000065040.1 ENSMUSG00000065040 ENSMUST00000083106 Gm24977 snRNA Interval_161655 chr8 121828855 121830137 + 0 NA promoter-TSS (ENSMUSG00000040263.16) protein_coding-promoter-TSS (ENSMUSG00000040263.16) -16 ENSMUSG00000040263.16 ENSMUSG00000040263 ENSMUST00000174255 Klhdc4 protein_coding Interval_125168 chr5 65043623 65044176 + 0 NA Intergenic Intergenic 48233 ENSMUSG00000037913.12 ENSMUSG00000037913 ENSMUST00000203117 Tmem156 protein_coding Interval_92644 chr2 61852478 61853773 + 0 NA Intergenic Intergenic 50195 ENSMUSG00000035033.15 ENSMUSG00000035033 ENSMUST00000131538 Tbr1 protein_coding Interval_173575 chrX 99657974 99658687 + 0 NA Intergenic Intergenic 29444 ENSMUSG00000082505.1 ENSMUSG00000082505 ENSMUST00000117174 Gm14816 processed_pseudogene Interval_55193 chr14 79237670 79238568 + 0 NA intron (ENSMUSG00000071262.10, intron 1 of 1) protein_coding-intron (ENSMUSG00000071262.10, intron 1 of 2) 9250 ENSMUSG00000071262.10 ENSMUSG00000071262 ENSMUST00000162937 Zfp957 protein_coding Interval_152976 chr7 140188356 140188834 + 0 NA Intergenic Intergenic 15360 ENSMUSG00000051051.7 ENSMUSG00000051051 ENSMUST00000055890 Olfr523 protein_coding Interval_223 KV575236.1 70775 70974 + 0 NA NA NA NA NA Interval_138286 chr6 86921620 86922385 + 0 NA intron (ENSMUSG00000057230.14, intron 1 of 2) protein_coding-intron (ENSMUSG00000057230.14, intron 1 of 19) -39639 ENSMUSG00000107576.1 ENSMUSG00000107576 ENSMUST00000204381 Gm44093 TEC Interval_8212 chr1 136534070 136535180 + 0 NA Intergenic Intergenic -6980 ENSMUSG00000104414.1 ENSMUSG00000104414 ENSMUST00000194018 Gm37799 lincRNA Interval_92978 chr2 69132053 69133139 + 0 NA Intergenic Intergenic -46709 ENSMUSG00000034738.8 ENSMUSG00000034738 ENSMUST00000141276 Nostrin protein_coding Interval_153243 chr7 142799211 142799681 + 0 NA Intergenic Intergenic -15806 ENSMUSG00000073781.4 ENSMUSG00000073781 ENSMUST00000097935 Gm6471 lincRNA Interval_64542 chr16 13188157 13188887 + 0 NA Intergenic Intergenic 56131 ENSMUSG00000022545.13 ENSMUSG00000022545 ENSMUST00000156393 Ercc4 protein_coding Interval_68481 chr16 77937957 77938552 + 0 NA Intergenic Intergenic -54760 ENSMUSG00000116886.1 ENSMUSG00000116886 ENSMUST00000232575 Gm49589 processed_pseudogene Interval_91706 chr2 48456138 48457361 + 0 NA intron (ENSMUSG00000086353.1, intron 1 of 5) lincRNA-intron (ENSMUSG00000086353.1, intron 1 of 5) 496 ENSMUSG00000086353.1 ENSMUSG00000086353 ENSMUST00000127672 Gm13481 lincRNA Interval_169168 chr9 94926863 94927227 + 0 NA intron (ENSMUSG00000031129.9, intron 6 of 15) protein_coding-intron (ENSMUSG00000031129.9, intron 6 of 15) 65639 ENSMUSG00000111087.1 ENSMUSG00000111087 ENSMUST00000214362 Gm47168 processed_pseudogene Interval_140810 chr6 121525719 121526696 + 0 NA Intergenic Intergenic -11989 ENSMUSG00000107923.1 ENSMUSG00000107923 ENSMUST00000205071 Gm43922 processed_pseudogene Interval_56139 chr14 106663788 106664543 + 0 NA Intergenic Intergenic 34133 ENSMUSG00000091723.2 ENSMUSG00000091723 ENSMUST00000167629 Gm17366 processed_pseudogene Interval_65902 chr16 30129335 30130352 + 0 NA Intergenic Intergenic -9616 ENSMUSG00000116887.1 ENSMUSG00000116887 ENSMUST00000231327 Gm6029 processed_pseudogene Interval_171505 chr9 118914226 118915715 + 0 NA intron (ENSMUSG00000086119.2, intron 1 of 3) antisense-intron (ENSMUSG00000086119.2, intron 1 of 3) -9903 ENSMUSG00000087041.1 ENSMUSG00000087041 ENSMUST00000139512 Gm16295 lincRNA Interval_72080 chr17 27898886 27899801 + 0 NA exon (ENSMUSG00000039512.12, exon 21 of 21) protein_coding-exon (ENSMUSG00000039512.12, exon 21 of 21) -8460 ENSMUSG00000117216.1 ENSMUSG00000117216 ENSMUST00000233056 Gm49801 antisense Interval_10144 chr1 166068119 166069024 + 0 NA Intergenic Intergenic -23844 ENSMUSG00000102484.1 ENSMUSG00000102484 ENSMUST00000191624 Gm37923 lincRNA Interval_28320 chr11 75178399 75179327 + 0 NA promoter-TSS (ENSMUSG00000038268.4) protein_coding-promoter-TSS (ENSMUSG00000038268.4) -76 ENSMUSG00000038268.4 ENSMUSG00000038268 ENSMUST00000123489 Ovca2 protein_coding Interval_81417 chr18 60643652 60644019 + 0 NA intron (ENSMUSG00000043079.17, intron 2 of 3) protein_coding-intron (ENSMUSG00000043079.17, intron 2 of 3) -19573 ENSMUSG00000043079.17 ENSMUSG00000043079 ENSMUST00000139236 Synpo protein_coding Interval_136929 chr6 64667524 64667791 + 0 NA exon (ENSMUSG00000071424.10, exon 16 of 16) protein_coding-exon (ENSMUSG00000071424.10, exon 16 of 16) 4469 ENSMUSG00000071424.10 ENSMUSG00000071424 ENSMUST00000210324 Grid2 protein_coding Interval_98997 chr2 156535426 156535911 + 0 NA intron (ENSMUSG00000027624.20, intron 2 of 4) protein_coding-intron (ENSMUSG00000027624.20, intron 19 of 21) -11942 ENSMUSG00000027628.10 ENSMUSG00000027628 ENSMUST00000126250 Aar2 protein_coding Interval_132463 chr5 145116553 145117427 + 0 NA intron (ENSMUSG00000029622.16, intron 1 of 2) protein_coding-intron (ENSMUSG00000029622.16, intron 1 of 9) 2678 ENSMUSG00000029622.16 ENSMUSG00000029622 ENSMUST00000144375 Arpc1b protein_coding Interval_153749 chr8 6373849 6374247 + 0 NA Intergenic Intergenic -63696 ENSMUSG00000109543.1 ENSMUSG00000109543 ENSMUST00000207242 Gm44844 processed_pseudogene Interval_14769 chr10 39703834 39704311 + 0 NA intron (ENSMUSG00000087177.7, intron 1 of 1) antisense-intron (ENSMUSG00000087177.7, intron 1 of 3) 27934 ENSMUSG00000087177.7 ENSMUSG00000087177 ENSMUST00000153113 E130307A14Rik antisense Interval_66152 chr16 31980905 31981773 + 0 NA promoter-TSS (ENSMUSG00000096112.1) miRNA-promoter-TSS (ENSMUSG00000096112.1) -770 ENSMUSG00000096112.1 ENSMUSG00000096112 ENSMUST00000180144 Gm26269 miRNA Interval_157066 chr8 64917637 64918107 + 0 NA Intergenic Intergenic -5895 ENSMUSG00000109613.1 ENSMUSG00000109613 ENSMUST00000211544 Gm45405 processed_pseudogene Interval_97299 chr2 133305798 133306002 + 0 NA Intergenic Intergenic -25024 ENSMUSG00000098578.1 ENSMUSG00000098578 ENSMUST00000184570 Gm27449 snRNA Interval_166406 chr9 59197501 59197911 + 0 NA intron (ENSMUSG00000110789.1, intron 4 of 4) lincRNA-intron (ENSMUSG00000110789.1, intron 4 of 4) 37365 ENSMUSG00000110789.1 ENSMUSG00000110789 ENSMUST00000215275 Gm33053 lincRNA Interval_72203 chr17 28567139 28568908 + 0 NA Intergenic Intergenic -7312 ENSMUSG00000024225.5 ENSMUSG00000024225 ENSMUST00000114785 Clps protein_coding Interval_77643 chr17 93513980 93514705 + 0 NA Intergenic Intergenic -122644 ENSMUSG00000117368.1 ENSMUSG00000117368 ENSMUST00000234726 Gm50001 processed_pseudogene Interval_153090 chr7 141291738 141292464 + 0 NA promoter-TSS (ENSMUSG00000025496.5) protein_coding-promoter-TSS (ENSMUSG00000025496.5) -1030 ENSMUSG00000025496.5 ENSMUSG00000025496 ENSMUST00000209649 Drd4 protein_coding Interval_96897 chr2 129278341 129278766 + 0 NA intron (ENSMUSG00000048327.6, intron 5 of 8) protein_coding-intron (ENSMUSG00000048327.6, intron 5 of 8) 18659 ENSMUSG00000048327.6 ENSMUSG00000048327 ENSMUST00000052708 Ckap2l protein_coding Interval_102070 chr3 16431255 16432002 + 0 NA Intergenic Intergenic 248392 ENSMUSG00000047213.14 ENSMUSG00000047213 ENSMUST00000108346 Ythdf3 protein_coding Interval_137600 chr6 74712985 74713360 + 0 NA Intergenic Intergenic -208008 ENSMUSG00000096282.1 ENSMUSG00000096282 ENSMUST00000179186 Gm22254 miRNA Interval_2103 chr1 36454585 36454817 + 0 NA Intergenic Intergenic -9444 ENSMUSG00000001143.13 ENSMUSG00000001143 ENSMUST00000193502 Lman2l protein_coding Interval_3380 chr1 57640305 57640538 + 0 NA Intergenic Intergenic -76370 ENSMUSG00000101151.1 ENSMUSG00000101151 ENSMUST00000186851 Gm17929 processed_pseudogene Interval_120117 chr4 141938742 141939390 + 0 NA exon (ENSMUSG00000051435.11, exon 15 of 32) protein_coding-exon (ENSMUSG00000051435.11, exon 15 of 32) -16640 ENSMUSG00000051435.11 ENSMUSG00000051435 ENSMUST00000125293 Fhad1 protein_coding Interval_81904 chr18 65739416 65740425 + 0 NA intron (ENSMUSG00000046610.15, intron 7 of 12) protein_coding-intron (ENSMUSG00000046610.15, intron 9 of 14) -24530 ENSMUSG00000118208.1 ENSMUSG00000118208 ENSMUST00000237991 Gm50234 processed_pseudogene Interval_163633 chr9 22830993 22831275 + 0 NA intron (ENSMUSG00000035919.16, intron 21 of 22) protein_coding-intron (ENSMUSG00000035919.16, intron 20 of 21) -58299 ENSMUSG00000098940.1 ENSMUSG00000098940 ENSMUST00000184937 Gm27639 snRNA Interval_23934 chr11 28559971 28560310 + 0 NA intron (ENSMUSG00000032878.16, intron 2 of 5) protein_coding-intron (ENSMUSG00000032878.16, intron 2 of 3) -121424 ENSMUSG00000084966.1 ENSMUSG00000084966 ENSMUST00000146554 2810471M01Rik lincRNA Interval_82849 chr18 77483853 77484543 + 0 NA exon (ENSMUSG00000025427.15, exon 2 of 8) protein_coding-exon (ENSMUSG00000025427.15, exon 2 of 8) -17050 ENSMUSG00000025427.15 ENSMUSG00000025427 ENSMUST00000182146 Rnf165 protein_coding Interval_42587 chr13 16017389 16017947 + 0 NA exon (ENSMUSG00000041324.14, exon 4 of 5) protein_coding-exon (ENSMUSG00000041324.14, exon 4 of 5) 3193 ENSMUSG00000041324.14 ENSMUSG00000041324 ENSMUST00000164993 Inhba protein_coding Interval_101587 chr3 7355095 7355286 + 0 NA Intergenic Intergenic 63269 ENSMUSG00000103274.1 ENSMUSG00000103274 ENSMUST00000192071 Gm37918 processed_pseudogene Interval_163358 chr9 21045273 21045772 + 0 NA Intergenic Intergenic -7740 ENSMUSG00000097535.1 ENSMUSG00000097535 ENSMUST00000180870 Gm26592 antisense Interval_136360 chr6 53781078 53781409 + 0 NA Intergenic Intergenic 3859 ENSMUSG00000107984.1 ENSMUSG00000107984 ENSMUST00000203325 Gm5306 processed_pseudogene Interval_129294 chr5 118734846 118735043 + 0 NA intron (ENSMUSG00000018076.12, intron 14 of 30) protein_coding-intron (ENSMUSG00000018076.12, intron 14 of 30) -15443 ENSMUSG00000018076.12 ENSMUSG00000018076 ENSMUST00000202787 Med13l protein_coding Interval_81354 chr18 58960982 58961361 + 0 NA intron (ENSMUSG00000053441.5, intron 10 of 22) protein_coding-intron (ENSMUSG00000053441.5, intron 10 of 22) -6237 ENSMUSG00000053441.5 ENSMUSG00000053441 ENSMUST00000237536 Adamts19 protein_coding Interval_105852 chr3 89714461 89715742 + 0 NA promoter-TSS (ENSMUSG00000027951.16) protein_coding-promoter-TSS (ENSMUSG00000027951.16) 79 ENSMUSG00000027951.16 ENSMUSG00000027951 ENSMUST00000131030 Adar protein_coding Interval_114826 chr4 85977720 85978484 + 0 NA intron (ENSMUSG00000066113.16, intron 2 of 3) protein_coding-intron (ENSMUSG00000066113.16, intron 2 of 3) 65392 ENSMUSG00000064687.1 ENSMUSG00000064687 ENSMUST00000082753 Gm25811 snRNA Interval_23139 chr11 20133896 20135359 + 0 NA Intergenic Intergenic -7941 ENSMUSG00000081346.1 ENSMUSG00000081346 ENSMUST00000121917 Gm12030 processed_pseudogene Interval_161854 chr8 123212252 123213424 + 0 NA promoter-TSS (ENSMUSG00000000743.9) protein_coding-promoter-TSS (ENSMUSG00000000743.9) -32 ENSMUSG00000048478.7 ENSMUSG00000048478 ENSMUST00000212271 Spata33 protein_coding Interval_96079 chr2 119653140 119653731 + 0 NA Intergenic Intergenic 9377 ENSMUSG00000027305.9 ENSMUSG00000027305 ENSMUST00000131596 Ndufaf1 protein_coding Interval_88824 chr2 11474493 11475629 + 0 NA TTS (ENSMUSG00000026773.19) protein_coding-TTS (ENSMUSG00000026773.19) -46645 ENSMUSG00000102329.1 ENSMUSG00000102329 ENSMUST00000192087 Gm10851 antisense Interval_81103 chr18 53891121 53891374 + 0 NA intron (ENSMUSG00000073563.3, intron 1 of 12) protein_coding-intron (ENSMUSG00000073563.3, intron 1 of 12) 29059 ENSMUSG00000073563.3 ENSMUSG00000073563 ENSMUST00000236399 Csnk1g3 protein_coding Interval_141243 chr6 126455869 126456708 + 0 NA Intergenic Intergenic 79124 ENSMUSG00000045534.4 ENSMUSG00000045534 ENSMUST00000060972 Kcna5 protein_coding Interval_172803 chrX 49945209 49945394 + 0 NA TTS (ENSMUSG00000083399.1) processed_pseudogene-TTS (ENSMUSG00000083399.1) 666 ENSMUSG00000083399.1 ENSMUSG00000083399 ENSMUST00000118188 Gm15033 processed_pseudogene Interval_133272 chr5 151003367 151003722 + 0 NA Intergenic Intergenic 5757 ENSMUSG00000106963.1 ENSMUSG00000106963 ENSMUST00000201408 Gm8675 processed_pseudogene Interval_4222 chr1 71703134 71704017 + 0 NA Intergenic Intergenic 6480 ENSMUSG00000101834.1 ENSMUSG00000101834 ENSMUST00000191383 Gm5829 processed_pseudogene Interval_143781 chr7 16272641 16274447 + 0 NA promoter-TSS (ENSMUSG00000091811.2) protein_coding-promoter-TSS (ENSMUSG00000091811.2) 73 ENSMUSG00000091811.2 ENSMUSG00000091811 ENSMUST00000169612 Inafm1 protein_coding Interval_68010 chr16 63468629 63469347 + 0 NA intron (ENSMUSG00000116752.1, intron 2 of 3) lincRNA-intron (ENSMUSG00000116752.1, intron 2 of 3) 23129 ENSMUSG00000116752.1 ENSMUSG00000116752 ENSMUST00000231817 Gm49622 lincRNA Interval_92925 chr2 68723903 68724111 + 0 NA intron (ENSMUSG00000079324.11, intron 18 of 28) protein_coding-intron (ENSMUSG00000079324.11, intron 17 of 27) 7716 ENSMUSG00000079324.11 ENSMUSG00000079324 ENSMUST00000135023 4932414N04Rik protein_coding Interval_137595 chr6 74340972 74341424 + 0 NA TTS (ENSMUSG00000093964.1) snoRNA-TTS (ENSMUSG00000093964.1) 248 ENSMUSG00000093964.1 ENSMUSG00000093964 ENSMUST00000177723 Gm26179 snoRNA Interval_72457 chr17 29925856 29926633 + 0 NA intron (ENSMUSG00000043557.16, intron 3 of 20) protein_coding-intron (ENSMUSG00000043557.16, intron 3 of 20) 36160 ENSMUSG00000086534.2 ENSMUSG00000086534 ENSMUST00000149552 Gm16758 antisense Interval_3506 chr1 59143859 59145119 + 0 NA intron (ENSMUSG00000079550.9, intron 9 of 19) protein_coding-intron (ENSMUSG00000079550.9, intron 10 of 21) -6558 ENSMUSG00000101586.1 ENSMUSG00000101586 ENSMUST00000190598 Gm29017 antisense Interval_171220 chr9 115301160 115301930 + 0 NA intron (ENSMUSG00000032437.10, intron 1 of 15) protein_coding-intron (ENSMUSG00000032437.10, intron 1 of 15) 8876 ENSMUSG00000032437.10 ENSMUSG00000032437 ENSMUST00000035010 Stt3b protein_coding Interval_82482 chr18 74374498 74374778 + 0 NA Intergenic Intergenic 25652 ENSMUSG00000035394.11 ENSMUSG00000035394 ENSMUST00000177407 Cfap53 protein_coding Interval_169720 chr9 100655744 100656198 + 0 NA intron (ENSMUSG00000037286.15, intron 1 of 8) protein_coding-intron (ENSMUSG00000037286.15, intron 1 of 32) -9868 ENSMUSG00000103657.1 ENSMUSG00000103657 ENSMUST00000192389 Gm37204 TEC Interval_165446 chr9 48161457 48162421 + 0 NA promoter-TSS (ENSMUSG00000044229.9) protein_coding-promoter-TSS (ENSMUSG00000044229.9) -2974 ENSMUSG00000110924.1 ENSMUSG00000110924 ENSMUST00000214538 Gm40518 lincRNA Interval_94986 chr2 102549526 102550431 + 0 NA promoter-TSS (ENSMUSG00000027188.8) protein_coding-promoter-TSS (ENSMUSG00000027188.8) -171 ENSMUSG00000027188.8 ENSMUSG00000027188 ENSMUST00000143071 Pamr1 protein_coding Interval_104373 chr3 64366048 64366787 + 0 NA Intergenic Intergenic -21790 ENSMUSG00000091967.5 ENSMUSG00000091967 ENSMUST00000175971 Vmn2r128 polymorphic_pseudogene Interval_157663 chr8 72148929 72149582 + 0 NA intron (ENSMUSG00000087502.1, intron 1 of 1) protein_coding-intron (ENSMUSG00000031799.10, intron 7 of 7) -8435 ENSMUSG00000097472.1 ENSMUSG00000097472 ENSMUST00000181918 Gm26586 antisense Interval_162697 chr9 7894156 7894596 + 0 NA Intergenic Intergenic -34050 ENSMUSG00000032000.17 ENSMUSG00000032000 ENSMUST00000159672 Birc3 protein_coding Interval_124222 chr5 41679143 41679767 + 0 NA intron (ENSMUSG00000029128.12, intron 4 of 6) protein_coding-intron (ENSMUSG00000029128.12, intron 4 of 6) 28702 ENSMUSG00000029128.12 ENSMUSG00000029128 ENSMUST00000201473 Rab28 protein_coding Interval_158569 chr8 84557888 84559885 + 0 NA intron (ENSMUSG00000034656.18, intron 20 of 48) protein_coding-intron (ENSMUSG00000034656.18, intron 18 of 46) 58298 ENSMUSG00000086067.1 ENSMUSG00000086067 ENSMUST00000127527 Gm16183 antisense Interval_94985 chr2 102544371 102544912 + 0 NA Intergenic Intergenic -5508 ENSMUSG00000027188.8 ENSMUSG00000027188 ENSMUST00000143071 Pamr1 protein_coding Interval_139421 chr6 99999675 100000987 + 0 NA Intergenic Intergenic -9116 ENSMUSG00000108151.1 ENSMUSG00000108151 ENSMUST00000204791 Gm33201 lincRNA Interval_40358 chr12 104274118 104274464 + 0 NA Intergenic Intergenic 11134 ENSMUSG00000079014.4 ENSMUSG00000079014 ENSMUST00000109960 Serpina3i protein_coding Interval_65613 chr16 24150988 24151218 + 0 NA intron (ENSMUSG00000115852.2, intron 2 of 3) transcribed_processed_pseudogene-intron (ENSMUSG00000115852.2, intron 2 of 3) 17458 ENSMUSG00000116173.1 ENSMUSG00000116173 ENSMUST00000230625 Gm32126 sense_intronic Interval_2701 chr1 43561777 43562611 + 0 NA TTS (ENSMUSG00000103945.1) TEC-TTS (ENSMUSG00000103945.1) 1921 ENSMUSG00000103945.1 ENSMUSG00000103945 ENSMUST00000193169 Gm38228 TEC Interval_165587 chr9 49935595 49936576 + 0 NA Intergenic Intergenic -18793 ENSMUSG00000111682.1 ENSMUSG00000111682 ENSMUST00000215094 Gm47543 lincRNA Interval_156239 chr8 46378527 46379021 + 0 NA intron (ENSMUSG00000109612.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000109612.1, intron 1 of 2) 7114 ENSMUSG00000109612.1 ENSMUSG00000109612 ENSMUST00000210694 Gm45253 lincRNA Interval_76067 chr17 74680961 74681218 + 0 NA exon (ENSMUSG00000024073.16, exon 2 of 2) protein_coding-exon (ENSMUSG00000024073.16, exon 2 of 2) 45367 ENSMUSG00000024073.16 ENSMUSG00000024073 ENSMUST00000182157 Birc6 protein_coding Interval_23280 chr11 21140508 21141406 + 0 NA exon (ENSMUSG00000020134.13, exon 3 of 7) protein_coding-exon (ENSMUSG00000020134.13, exon 3 of 7) 41423 ENSMUSG00000084362.1 ENSMUSG00000084362 ENSMUST00000121233 2610024D14Rik processed_pseudogene Interval_22393 chr11 9481464 9481916 + 0 NA intron (ENSMUSG00000004668.14, intron 41 of 61) protein_coding-intron (ENSMUSG00000004668.14, intron 41 of 61) 223933 ENSMUSG00000104137.1 ENSMUSG00000104137 ENSMUST00000195362 Gm36954 TEC Interval_13428 chr10 18138849 18139792 + 0 NA promoter-TSS (ENSMUSG00000071392.6) protein_coding-promoter-TSS (ENSMUSG00000071392.6) 7959 ENSMUSG00000071392.6 ENSMUSG00000071392 ENSMUST00000207148 Ect2l protein_coding Interval_131236 chr5 135933916 135936181 + 0 NA promoter-TSS (ENSMUSG00000051391.9) protein_coding-promoter-TSS (ENSMUSG00000051391.9) -494 ENSMUSG00000051391.9 ENSMUSG00000051391 ENSMUST00000126192 Ywhag protein_coding Interval_47098 chr13 75717331 75718174 + 0 NA intron (ENSMUSG00000001542.7, intron 1 of 3) protein_coding-intron (ENSMUSG00000001542.7, intron 1 of 11) -9527 ENSMUSG00000113041.1 ENSMUSG00000113041 ENSMUST00000222965 Gm48302 sense_intronic Interval_8129 chr1 135882466 135883428 + 0 NA intron (ENSMUSG00000026413.12, intron 6 of 13) protein_coding-intron (ENSMUSG00000026413.12, intron 6 of 13) 13165 ENSMUSG00000101482.1 ENSMUSG00000101482 ENSMUST00000189256 Gm28883 processed_pseudogene Interval_148755 chr7 85666836 85667554 + 0 NA Intergenic Intergenic -29161 ENSMUSG00000092567.2 ENSMUSG00000092567 ENSMUST00000173890 Vmn2r-ps73 unprocessed_pseudogene Interval_170613 chr9 109530146 109531791 + 0 NA intron (ENSMUSG00000104572.5, intron 1 of 2) transcribed_unprocessed_pseudogene-intron (ENSMUSG00000104572.5, intron 1 of 2) 3076 ENSMUSG00000104572.5 ENSMUSG00000104572 ENSMUST00000198015 Fbxw23 transcribed_unprocessed_pseudogene Interval_64472 chr16 11765405 11766314 + 0 NA Intergenic Intergenic -12570 ENSMUSG00000115936.1 ENSMUSG00000115936 ENSMUST00000229695 4833415N18Rik lincRNA Interval_44480 chr13 45240159 45240417 + 0 NA intron (ENSMUSG00000113772.1, intron 3 of 4) lincRNA-intron (ENSMUSG00000113772.1, intron 2 of 2) 3877 ENSMUSG00000113772.1 ENSMUSG00000113772 ENSMUST00000222925 Gm47448 lincRNA Interval_150238 chr7 108814805 108815242 + 0 NA Intergenic Intergenic 10974 ENSMUSG00000066241.2 ENSMUSG00000066241 ENSMUST00000084754 Olfr514 protein_coding Interval_75387 chr17 66294095 66294389 + 0 NA Intergenic Intergenic 25270 ENSMUSG00000117010.1 ENSMUSG00000117010 ENSMUST00000233050 Gm49933 processed_pseudogene Interval_79752 chr18 34900535 34901736 + 0 NA Intergenic Intergenic 30872 ENSMUSG00000024360.8 ENSMUSG00000024360 ENSMUST00000025218 Etf1 protein_coding Interval_112567 chr4 43274782 43275607 + 0 NA intron (ENSMUSG00000028457.18, intron 2 of 8) protein_coding-intron (ENSMUSG00000028457.18, intron 2 of 14) 8009 ENSMUSG00000028457.18 ENSMUSG00000028457 ENSMUST00000102953 Atp8b5 protein_coding Interval_144677 chr7 27481392 27481963 + 0 NA Intergenic Intergenic -5698 ENSMUSG00000008384.8 ENSMUSG00000008384 ENSMUST00000135881 Sertad1 protein_coding Interval_115188 chr4 93927693 93927891 + 0 NA Intergenic Intergenic 125459 ENSMUSG00000073797.5 ENSMUSG00000073797 ENSMUST00000121966 Gm12650 processed_pseudogene Interval_34296 chr12 3186570 3187214 + 0 NA intron (ENSMUSG00000110250.1, intron 7 of 12) unprocessed_pseudogene-intron (ENSMUSG00000110250.1, intron 7 of 12) 15018 ENSMUSG00000110250.1 ENSMUSG00000110250 ENSMUST00000210657 Gm9077 unprocessed_pseudogene Interval_4308 chr1 72610359 72611465 + 0 NA intron (ENSMUSG00000039354.16, intron 9 of 16) protein_coding-intron (ENSMUSG00000039354.16, intron 9 of 16) 27661 ENSMUSG00000039354.16 ENSMUSG00000039354 ENSMUST00000126832 Smarcal1 protein_coding Interval_117464 chr4 123904556 123905570 + 0 NA promoter-TSS (ENSMUSG00000028647.13) protein_coding-promoter-TSS (ENSMUSG00000028647.13) 22 ENSMUSG00000028647.13 ENSMUSG00000028647 ENSMUST00000137685 Mycbp protein_coding Interval_49282 chr13 110155039 110155413 + 0 NA intron (ENSMUSG00000021700.10, intron 3 of 4) protein_coding-intron (ENSMUSG00000021700.10, intron 3 of 4) 124924 ENSMUSG00000021700.10 ENSMUSG00000021700 ENSMUST00000226040 Rab3c protein_coding Interval_170279 chr9 106645711 106646198 + 0 NA intron (ENSMUSG00000023192.12, intron 5 of 6) protein_coding-intron (ENSMUSG00000023192.12, intron 4 of 5) 659 ENSMUSG00000023192.12 ENSMUSG00000023192 ENSMUST00000201955 Grm2 protein_coding Interval_63784 chr15 103395020 103395226 + 0 NA Intergenic Intergenic 17052 ENSMUSG00000104327.1 ENSMUSG00000104327 ENSMUST00000193409 Gm37322 TEC Interval_8310 chr1 137193465 137193752 + 0 NA Intergenic Intergenic 22039 ENSMUSG00000077207.1 ENSMUSG00000077207 ENSMUST00000104019 Gm25609 snRNA Interval_71943 chr17 27133260 27134281 + 0 NA promoter-TSS (ENSMUSG00000024208.16) protein_coding-promoter-TSS (ENSMUSG00000024208.16) -147 ENSMUSG00000024208.16 ENSMUSG00000024208 ENSMUST00000119227 Uqcc2 protein_coding Interval_28617 chr11 77200778 77201652 + 0 NA promoter-TSS (ENSMUSG00000109010.1) lincRNA-promoter-TSS (ENSMUSG00000109010.1) -396 ENSMUSG00000109010.1 ENSMUSG00000109010 ENSMUST00000207081 Gm45027 lincRNA Interval_156353 chr8 47627667 47627898 + 0 NA exon (ENSMUSG00000109960.1, exon 1 of 1) processed_pseudogene-exon (ENSMUSG00000109960.1, exon 1 of 1) 318 ENSMUSG00000109960.1 ENSMUSG00000109960 ENSMUST00000210283 Gm45575 processed_pseudogene Interval_20519 chr10 118370365 118371071 + 0 NA Intergenic Intergenic -16613 ENSMUSG00000112919.1 ENSMUSG00000112919 ENSMUST00000178998 Gm9049 protein_coding Interval_145418 chr7 34637385 34638026 + 0 NA promoter-TSS (ENSMUSG00000108723.1) lincRNA-promoter-TSS (ENSMUSG00000108723.1) 7 ENSMUSG00000108723.1 ENSMUSG00000108723 ENSMUST00000206863 Gm44837 lincRNA Interval_17668 chr10 78779787 78781249 + 0 NA promoter-TSS (ENSMUSG00000005357.9) protein_coding-promoter-TSS (ENSMUSG00000005357.9) -184 ENSMUSG00000005357.9 ENSMUSG00000005357 ENSMUST00000217717 Slc1a6 protein_coding Interval_121138 chr4 153432186 153432387 + 0 NA exon (ENSMUSG00000039546.9, exon 2 of 6) protein_coding-exon (ENSMUSG00000039546.9, exon 2 of 6) 49893 ENSMUSG00000039546.9 ENSMUSG00000039546 ENSMUST00000149177 Ajap1 protein_coding Interval_32300 chr11 106761408 106763135 + 0 NA intron (ENSMUSG00000040528.15, intron 6 of 9) protein_coding-intron (ENSMUSG00000040528.15, intron 4 of 6) 2470 ENSMUSG00000088400.1 ENSMUSG00000088400 ENSMUST00000157775 Gm25889 snRNA Interval_84158 chr19 7617120 7618105 + 0 NA intron (ENSMUSG00000024973.17, intron 3 of 5) protein_coding-intron (ENSMUSG00000024973.17, intron 3 of 5) 5043 ENSMUSG00000024973.17 ENSMUSG00000024973 ENSMUST00000148558 Plaat5 protein_coding Interval_174743 chrX 164505132 164505691 + 0 NA promoter-TSS (ENSMUSG00000031384.2) protein_coding-promoter-TSS (ENSMUSG00000031384.2) -916 ENSMUSG00000031384.2 ENSMUSG00000031384 ENSMUST00000033756 Asb9 protein_coding Interval_50816 chr14 19994001 19994272 + 0 NA Intergenic Intergenic -16952 ENSMUSG00000043004.13 ENSMUSG00000043004 ENSMUST00000161247 Gng2 protein_coding Interval_157316 chr8 69233340 69233588 + 0 NA Intergenic Intergenic 6566 ENSMUSG00000110657.1 ENSMUSG00000110657 ENSMUST00000211891 Gm7684 processed_pseudogene Interval_124680 chr5 53201140 53201946 + 0 NA intron (ENSMUSG00000029189.10, intron 1 of 2) protein_coding-intron (ENSMUSG00000029189.10, intron 1 of 23) 12384 ENSMUSG00000029189.10 ENSMUSG00000029189 ENSMUST00000199919 Sel1l3 protein_coding Interval_63641 chr15 102495088 102495444 + 0 NA intron (ENSMUSG00000056851.14, intron 8 of 8) protein_coding-intron (ENSMUSG00000056851.14, intron 14 of 14) -8456 ENSMUSG00000071586.4 ENSMUSG00000071586 ENSMUST00000096145 Gm10337 protein_coding Interval_26189 chr11 54973004 54974901 + 0 NA Intergenic Intergenic -17905 ENSMUSG00000020400.17 ENSMUSG00000020400 ENSMUST00000132776 Tnip1 protein_coding Interval_80102 chr18 37518231 37520700 + 0 NA exon (ENSMUSG00000073591.4, exon 2 of 2) protein_coding-exon (ENSMUSG00000073591.4, exon 2 of 2) 1594 ENSMUSG00000073591.4 ENSMUSG00000073591 ENSMUST00000097609 Pcdhb22 protein_coding Interval_128393 chr5 113090596 113091707 + 0 NA intron (ENSMUSG00000051339.10, intron 7 of 7) protein_coding-intron (ENSMUSG00000051339.10, intron 7 of 7) -9365 ENSMUSG00000106541.1 ENSMUSG00000106541 ENSMUST00000197597 Gm43246 TEC Interval_43419 chr13 30548809 30549400 + 0 NA Intergenic Intergenic -3742 ENSMUSG00000038462.3 ENSMUSG00000038462 ENSMUST00000042834 Uqcrfs1 protein_coding Interval_18138 chr10 82909218 82909894 + 0 NA Intergenic Intergenic 42930 ENSMUSG00000109864.1 ENSMUSG00000109864 ENSMUST00000211623 Eid3 protein_coding Interval_115476 chr4 99241448 99242432 + 0 NA intron (ENSMUSG00000028550.15, intron 10 of 10) protein_coding-intron (ENSMUSG00000028550.15, intron 10 of 10) -30731 ENSMUSG00000104479.1 ENSMUSG00000104479 ENSMUST00000195331 Gm10305 TEC Interval_118494 chr4 132048179 132049455 + 0 NA exon (ENSMUSG00000084869.1, exon 2 of 2) lincRNA-exon (ENSMUSG00000084869.1, exon 2 of 2) 274 ENSMUSG00000028906.17 ENSMUSG00000028906 ENSMUST00000131953 Epb41 protein_coding Interval_102826 chr3 31609090 31609293 + 0 NA Intergenic Intergenic 81394 ENSMUSG00000103499.5 ENSMUSG00000103499 ENSMUST00000192046 Gm6558 transcribed_unprocessed_pseudogene Interval_67062 chr16 42336798 42340630 + 0 NA intron (ENSMUSG00000047261.9, intron 1 of 2) protein_coding-intron (ENSMUSG00000047261.9, intron 1 of 2) -35245 ENSMUSG00000098300.1 ENSMUSG00000098300 ENSMUST00000184886 Mir6540 miRNA Interval_53827 chr14 62360690 62360899 + 0 NA intron (ENSMUSG00000021932.13, intron 6 of 7) protein_coding-intron (ENSMUSG00000021932.13, intron 6 of 10) 28669 ENSMUSG00000021932.13 ENSMUSG00000021932 ENSMUST00000156608 Rnaseh2b protein_coding Interval_34777 chr12 11052072 11053395 + 0 NA intron (ENSMUSG00000113620.1, intron 2 of 2) lincRNA-intron (ENSMUSG00000113620.1, intron 2 of 2) 4920 ENSMUSG00000113620.1 ENSMUSG00000113620 ENSMUST00000222157 7420701I03Rik lincRNA Interval_138517 chr6 88860785 88861511 + 0 NA intron (ENSMUSG00000033152.13, intron 2 of 7) protein_coding-intron (ENSMUSG00000033152.13, intron 2 of 7) -12305 ENSMUSG00000033152.13 ENSMUSG00000033152 ENSMUST00000135843 Podxl2 protein_coding Interval_143362 chr7 6131884 6133337 + 0 NA TTS (ENSMUSG00000046792.8) protein_coding-TTS (ENSMUSG00000046792.8) -3820 ENSMUSG00000108923.1 ENSMUSG00000108923 ENSMUST00000208973 4933431C10Rik TEC Interval_105546 chr3 87565664 87566631 + 0 NA Intergenic Intergenic 16048 ENSMUSG00000118505.1 ENSMUSG00000118505 ENSMUST00000238853 ETV3L protein_coding Interval_59957 chr15 62219090 62220026 + 0 NA promoter-TSS (ENSMUSG00000101167.1) processed_pseudogene-promoter-TSS (ENSMUSG00000101167.1) -226 ENSMUSG00000101167.1 ENSMUSG00000101167 ENSMUST00000151919 Macroh2a3 processed_pseudogene Interval_81724 chr18 63901214 63901788 + 0 NA intron (ENSMUSG00000040560.10, intron 20 of 26) protein_coding-intron (ENSMUSG00000040560.10, intron 21 of 27) -2470 ENSMUSG00000118258.1 ENSMUSG00000118258 ENSMUST00000237352 Gm19076 processed_pseudogene Interval_115347 chr4 97707551 97708114 + 0 NA intron (ENSMUSG00000048747.14, intron 1 of 2) protein_coding-intron (ENSMUSG00000048747.14, intron 2 of 5) -17096 ENSMUSG00000048747.14 ENSMUSG00000048747 ENSMUST00000147069 E130114P18Rik protein_coding Interval_138766 chr6 91706289 91706591 + 0 NA intron (ENSMUSG00000030096.8, intron 1 of 2) protein_coding-intron (ENSMUSG00000030096.8, intron 2 of 14) -2966 ENSMUSG00000108526.1 ENSMUSG00000108526 ENSMUST00000206938 Gm45828 TEC Interval_143649 chr7 13797376 13797635 + 0 NA intron (ENSMUSG00000078798.4, intron 5 of 5) protein_coding-intron (ENSMUSG00000078798.4, intron 5 of 5) 17537 ENSMUSG00000100660.1 ENSMUSG00000100660 ENSMUST00000188339 Kat6b-ps2 processed_pseudogene Interval_10688 chr1 172900334 172900890 + 0 NA Intergenic Intergenic -5571 ENSMUSG00000026542.6 ENSMUSG00000026542 ENSMUST00000027824 Apcs protein_coding Interval_142372 chr6 141097459 141097723 + 0 NA Intergenic Intergenic -40456 ENSMUSG00000107462.1 ENSMUSG00000107462 ENSMUST00000203682 Gm7384 processed_pseudogene Interval_130871 chr5 132832942 132833162 + 0 NA Intergenic Intergenic 31374 ENSMUSG00000088123.1 ENSMUSG00000088123 ENSMUST00000157498 Gm25722 misc_RNA Interval_8414 chr1 138990653 138990929 + 0 NA TTS (ENSMUSG00000085361.2) processed_pseudogene-TTS (ENSMUSG00000085361.2) 1278 ENSMUSG00000085361.2 ENSMUSG00000085361 ENSMUST00000140747 Gm16305 processed_pseudogene Interval_168768 chr9 86791602 86792799 + 0 NA TTS (ENSMUSG00000033419.16) protein_coding-TTS (ENSMUSG00000033419.16) -5345 ENSMUSG00000103891.1 ENSMUSG00000103891 ENSMUST00000192170 Gm37941 TEC Interval_4133 chr1 69968919 69969292 + 0 NA intron (ENSMUSG00000053153.14, intron 1 of 4) protein_coding-intron (ENSMUSG00000053153.14, intron 10 of 16) -13976 ENSMUSG00000080524.1 ENSMUSG00000080524 ENSMUST00000116874 Gm23879 snRNA Interval_54462 chr14 69944308 69945169 + 0 NA intron (ENSMUSG00000022085.4, intron 3 of 6) protein_coding-intron (ENSMUSG00000022085.4, intron 3 of 6) 104318 ENSMUSG00000022085.4 ENSMUSG00000022085 ENSMUST00000022678 Pebp4 protein_coding Interval_45755 chr13 57740381 57741035 + 0 NA intron (ENSMUSG00000056222.15, intron 2 of 10) protein_coding-intron (ENSMUSG00000056222.15, intron 1 of 9) 167624 ENSMUSG00000056222.15 ENSMUSG00000056222 ENSMUST00000185905 Spock1 protein_coding Interval_54232 chr14 66686635 66686868 + 0 NA intron (ENSMUSG00000045875.13, intron 2 of 2) protein_coding-intron (ENSMUSG00000045875.13, intron 2 of 3) 51420 ENSMUSG00000045875.13 ENSMUSG00000045875 ENSMUST00000161339 Adra1a protein_coding Interval_166351 chr9 58534496 58536069 + 0 NA TTS (ENSMUSG00000035914.11) protein_coding-TTS (ENSMUSG00000035914.11) 5432 ENSMUSG00000035914.11 ENSMUSG00000035914 ENSMUST00000213722 Cd276 protein_coding Interval_118899 chr4 134356007 134357952 + 0 NA exon (ENSMUSG00000028838.11, exon 11 of 11) protein_coding-exon (ENSMUSG00000028838.11, exon 11 of 11) 8445 ENSMUSG00000028838.11 ENSMUSG00000028838 ENSMUST00000142730 Extl1 protein_coding Interval_115670 chr4 101898597 101899691 + 0 NA Intergenic Intergenic -2162 ENSMUSG00000084208.1 ENSMUSG00000084208 ENSMUST00000117669 Gm12792 processed_pseudogene Interval_158665 chr8 85021389 85022258 + 0 NA intron (ENSMUSG00000052456.9, intron 2 of 4) protein_coding-intron (ENSMUSG00000052456.9, intron 2 of 6) 3045 ENSMUSG00000052456.9 ENSMUSG00000052456 ENSMUST00000211221 Asna1 protein_coding Interval_138941 chr6 93667923 93668133 + 0 NA Intergenic Intergenic -17803 ENSMUSG00000107739.1 ENSMUSG00000107739 ENSMUST00000203479 Gm7812 processed_pseudogene Interval_141561 chr6 129325811 129326112 + 0 NA intron (ENSMUSG00000047720.7, intron 1 of 2) protein_coding-intron (ENSMUSG00000047720.7, intron 3 of 4) 735 ENSMUSG00000047720.7 ENSMUSG00000047720 ENSMUST00000203159 Clec2m protein_coding Interval_80105 chr18 37661453 37662573 + 0 NA TTS (ENSMUSG00000073590.3) lincRNA-TTS (ENSMUSG00000073590.3) 220 ENSMUSG00000103144.1 ENSMUSG00000103144 ENSMUST00000194190 Pcdhga1 protein_coding Interval_104705 chr3 69557872 69558064 + 0 NA exon (ENSMUSG00000027784.10, exon 4 of 4) protein_coding-exon (ENSMUSG00000027784.10, exon 4 of 4) 9496 ENSMUSG00000098006.1 ENSMUSG00000098006 ENSMUST00000183259 Gm8565 processed_pseudogene Interval_64679 chr16 14122720 14124518 + 0 NA intron (ENSMUSG00000060657.8, intron 21 of 26) protein_coding-intron (ENSMUSG00000060657.8, intron 21 of 26) 5012 ENSMUSG00000098652.1 ENSMUSG00000098652 ENSMUST00000183739 Gm27671 miRNA Interval_147073 chr7 60740852 60741354 + 0 NA Intergenic Intergenic 12910 ENSMUSG00000109222.1 ENSMUSG00000109222 ENSMUST00000207136 Gm10297 processed_pseudogene Interval_135661 chr6 42612353 42612609 + 0 NA Intergenic Intergenic 16959 ENSMUSG00000029851.5 ENSMUSG00000029851 ENSMUST00000131341 Tcaf2 protein_coding Interval_116338 chr4 109974358 109974833 + 0 NA Intergenic Intergenic 3218 ENSMUSG00000085256.1 ENSMUSG00000085256 ENSMUST00000124754 Dmrta2os antisense Interval_68844 chr16 87535610 87536965 + 0 NA Intergenic Intergenic -8122 ENSMUSG00000077579.1 ENSMUSG00000077579 ENSMUST00000104391 Gm24891 snoRNA Interval_57645 chr15 13132808 13134345 + 0 NA intron (ENSMUSG00000039385.5, intron 1 of 3) protein_coding-intron (ENSMUSG00000039385.5, intron 1 of 11) 40099 ENSMUSG00000039385.5 ENSMUSG00000039385 ENSMUST00000226917 Cdh6 protein_coding Interval_137829 chr6 82806090 82806791 + 0 NA Intergenic Intergenic -1357 ENSMUSG00000109556.1 ENSMUSG00000109556 ENSMUST00000209189 Gm38843 lincRNA Interval_43704 chr13 35432570 35432902 + 0 NA intron (ENSMUSG00000114838.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000114838.1, intron 1 of 1) 37353 ENSMUSG00000114838.1 ENSMUSG00000114838 ENSMUST00000226101 Gm48703 lincRNA Interval_50805 chr14 19944786 19945839 + 0 NA intron (ENSMUSG00000043004.13, intron 3 of 5) protein_coding-intron (ENSMUSG00000043004.13, intron 3 of 5) 31872 ENSMUSG00000043004.13 ENSMUSG00000043004 ENSMUST00000161247 Gng2 protein_coding Interval_49933 chr13 118456933 118457147 + 0 NA Intergenic Intergenic 53873 ENSMUSG00000114668.1 ENSMUSG00000114668 ENSMUST00000225301 Gm47563 processed_pseudogene Interval_73742 chr17 43130836 43131147 + 0 NA Intergenic Intergenic 27275 ENSMUSG00000117011.1 ENSMUSG00000117011 ENSMUST00000232795 E130008D07Rik lincRNA Interval_11748 chr1 185172067 185172336 + 0 NA Intergenic Intergenic -70706 ENSMUSG00000077571.1 ENSMUSG00000077571 ENSMUST00000104383 Snora36b snoRNA Interval_29124 chr11 80468729 80468960 + 0 NA intron (ENSMUSG00000017428.16, intron 8 of 8) protein_coding-intron (ENSMUSG00000017428.16, intron 9 of 13) -8212 ENSMUSG00000048895.13 ENSMUSG00000048895 ENSMUST00000147694 Cdk5r1 protein_coding Interval_75927 chr17 73112635 73113487 + 0 NA intron (ENSMUSG00000054469.14, intron 1 of 5) protein_coding-intron (ENSMUSG00000054469.14, intron 1 of 5) -13366 ENSMUSG00000054469.14 ENSMUSG00000054469 ENSMUST00000134149 Lclat1 protein_coding Interval_163150 chr9 15797830 15798245 + 0 NA Intergenic Intergenic -25110 ENSMUSG00000111217.1 ENSMUSG00000111217 ENSMUST00000214799 Gm48711 processed_pseudogene Interval_138940 chr6 93666777 93666981 + 0 NA Intergenic Intergenic -16654 ENSMUSG00000107739.1 ENSMUSG00000107739 ENSMUST00000203479 Gm7812 processed_pseudogene Interval_119179 chr4 136035551 136035916 + 0 NA intron (ENSMUSG00000059291.15, intron 3 of 4) protein_coding-intron (ENSMUSG00000059291.15, intron 3 of 4) -13970 ENSMUSG00000028668.5 ENSMUSG00000028668 ENSMUST00000030427 Eloa protein_coding Interval_15179 chr10 43154909 43155749 + 0 NA exon (ENSMUSG00000099893.1, exon 1 of 1) TEC-exon (ENSMUSG00000099893.1, exon 1 of 1) 1113 ENSMUSG00000099893.1 ENSMUSG00000099893 ENSMUST00000187332 Gm29245 TEC Interval_92095 chr2 53162459 53163058 + 0 NA intron (ENSMUSG00000061136.16, intron 5 of 25) protein_coding-intron (ENSMUSG00000061136.16, intron 5 of 25) 28429 ENSMUSG00000061136.16 ENSMUSG00000061136 ENSMUST00000132031 Prpf40a protein_coding Interval_144187 chr7 19858947 19859587 + 0 NA TTS (ENSMUSG00000092216.3) protein_coding-TTS (ENSMUSG00000092216.3) -3031 ENSMUSG00000014686.8 ENSMUSG00000014686 ENSMUST00000208198 Ceacam16 protein_coding Interval_104408 chr3 65385912 65386236 + 0 NA intron (ENSMUSG00000027828.12, intron 3 of 3) protein_coding-intron (ENSMUSG00000027828.12, intron 3 of 4) -2693 ENSMUSG00000027828.12 ENSMUSG00000027828 ENSMUST00000119896 Ssr3 protein_coding Interval_63876 chr16 4177395 4177636 + 0 NA intron (ENSMUSG00000022521.10, intron 2 of 29) protein_coding-intron (ENSMUSG00000022521.10, intron 2 of 30) -3879 ENSMUSG00000103937.1 ENSMUSG00000103937 ENSMUST00000195629 Gm37186 TEC Interval_41298 chr12 112562361 112562576 + 0 NA Intergenic Intergenic -42189 ENSMUSG00000037679.9 ENSMUSG00000037679 ENSMUST00000222275 Inf2 protein_coding Interval_79192 chr18 25553165 25553883 + 0 NA intron (ENSMUSG00000024268.16, intron 2 of 5) protein_coding-intron (ENSMUSG00000024268.16, intron 2 of 12) -43966 ENSMUSG00000114306.1 ENSMUSG00000114306 ENSMUST00000223994 Gm3227 antisense Interval_163904 chr9 28171481 28172175 + 0 NA intron (ENSMUSG00000062257.13, intron 1 of 7) protein_coding-intron (ENSMUSG00000062257.13, intron 1 of 7) -26112 ENSMUSG00000087531.7 ENSMUSG00000087531 ENSMUST00000139851 Gm15606 sense_intronic Interval_23233 chr11 20733729 20734002 + 0 NA intron (ENSMUSG00000049659.15, intron 1 of 7) protein_coding-intron (ENSMUSG00000049659.15, intron 1 of 8) 4445 ENSMUSG00000084252.1 ENSMUSG00000084252 ENSMUST00000120008 Gm12036 processed_pseudogene Interval_81535 chr18 61535983 61537399 + 0 NA promoter-TSS (ENSMUSG00000045094.8) protein_coding-promoter-TSS (ENSMUSG00000045094.8) -116 ENSMUSG00000045094.8 ENSMUSG00000045094 ENSMUST00000237557 Arhgef37 protein_coding Interval_169753 chr9 100969429 100970144 + 0 NA Intergenic Intergenic 14017 ENSMUSG00000037286.15 ENSMUSG00000037286 ENSMUST00000191345 Stag1 protein_coding Interval_3015 chr1 52192104 52192290 + 0 NA intron (ENSMUSG00000026103.14, intron 6 of 9) protein_coding-intron (ENSMUSG00000026103.14, intron 4 of 7) -1288 ENSMUSG00000026103.14 ENSMUSG00000026103 ENSMUST00000142976 Gls protein_coding Interval_130005 chr5 123670697 123671800 + 0 NA intron (ENSMUSG00000049550.17, intron 1 of 23) protein_coding-intron (ENSMUSG00000049550.17, intron 1 of 25) 12220 ENSMUSG00000104877.1 ENSMUSG00000104877 ENSMUST00000199851 Gm42651 TEC Interval_36714 chr12 52394453 52396750 + 0 NA Intergenic Intergenic 52524 ENSMUSG00000112139.1 ENSMUSG00000112139 ENSMUST00000218097 Gm47431 lincRNA Interval_19019 chr10 93821900 93822226 + 0 NA Intergenic Intergenic -11755 ENSMUSG00000020020.8 ENSMUSG00000020020 ENSMUST00000216224 Usp44 protein_coding Interval_55224 chr14 79470914 79471132 + 0 NA exon (ENSMUSG00000022023.6, exon 1 of 4) protein_coding-exon (ENSMUSG00000022023.6, exon 1 of 4) 1214 ENSMUSG00000022023.6 ENSMUSG00000022023 ENSMUST00000228105 Wbp4 protein_coding Interval_89417 chr2 20562724 20563575 + 0 NA intron (ENSMUSG00000036617.17, intron 1 of 2) protein_coding-intron (ENSMUSG00000036617.17, intron 3 of 18) 3345 ENSMUSG00000098575.1 ENSMUSG00000098575 ENSMUST00000183963 Gm27446 misc_RNA Interval_151103 chr7 118562293 118562640 + 0 NA intron (ENSMUSG00000042246.5, intron 3 of 10) protein_coding-intron (ENSMUSG00000042246.5, intron 3 of 15) 22220 ENSMUSG00000042246.5 ENSMUSG00000042246 ENSMUST00000139693 Tmc7 protein_coding Interval_23548 chr11 23292420 23293244 + 0 NA intron (ENSMUSG00000020290.14, intron 22 of 25) protein_coding-intron (ENSMUSG00000020290.14, intron 22 of 25) 8188 ENSMUSG00000020290.14 ENSMUSG00000020290 ENSMUST00000150750 Xpo1 protein_coding Interval_104162 chr3 59297804 59298085 + 0 NA exon (ENSMUSG00000056476.13, exon 40 of 43) protein_coding-exon (ENSMUSG00000056476.13, exon 40 of 43) 28158 ENSMUSG00000104550.1 ENSMUSG00000104550 ENSMUST00000199400 Gm43589 TEC Interval_71659 chr17 25196667 25197527 + 0 NA intron (ENSMUSG00000015127.14, intron 2 of 14) protein_coding-intron (ENSMUSG00000015127.14, intron 2 of 14) 12543 ENSMUSG00000067722.4 ENSMUSG00000067722 ENSMUST00000232784 BC003965 protein_coding Interval_162239 chr8 126359890 126360107 + 0 NA intron (ENSMUSG00000057060.8, intron 3 of 7) protein_coding-intron (ENSMUSG00000057060.8, intron 2 of 6) -62530 ENSMUSG00000051671.7 ENSMUSG00000051671 ENSMUST00000211868 Coa6 protein_coding Interval_144659 chr7 27371828 27372435 + 0 NA exon (ENSMUSG00000011751.16, exon 23 of 36) protein_coding-exon (ENSMUSG00000011751.16, exon 23 of 36) -14712 ENSMUSG00000092367.1 ENSMUSG00000092367 ENSMUST00000126587 Gm20479 protein_coding Interval_150500 chr7 111253737 111254685 + 0 NA Intergenic Intergenic -112087 ENSMUSG00000109808.1 ENSMUSG00000109808 ENSMUST00000211799 5430402P08Rik lincRNA Interval_96878 chr2 129190638 129190991 + 0 NA Intergenic Intergenic 6312 ENSMUSG00000103532.1 ENSMUSG00000103532 ENSMUST00000193902 Gm4430 TEC Interval_7728 chr1 133314519 133314817 + 0 NA intron (ENSMUSG00000103421.1, intron 1 of 3) protein_coding-intron (ENSMUSG00000103421.1, intron 1 of 4) 4778 ENSMUSG00000103421.1 ENSMUSG00000103421 ENSMUST00000192465 Golt1a protein_coding Interval_125296 chr5 66019197 66019694 + 0 NA intron (ENSMUSG00000070780.11, intron 8 of 8) protein_coding-intron (ENSMUSG00000070780.11, intron 5 of 5) -18112 ENSMUSG00000054598.13 ENSMUSG00000054598 ENSMUST00000201302 9130230L23Rik protein_coding Interval_154217 chr8 13501372 13501753 + 0 NA Intergenic Intergenic -7072 ENSMUSG00000031451.6 ENSMUSG00000031451 ENSMUST00000033828 Gas6 protein_coding Interval_102110 chr3 17785586 17788016 + 0 NA Intergenic Intergenic -3156 ENSMUSG00000100252.6 ENSMUSG00000100252 ENSMUST00000185804 Mir124-2hg lincRNA Interval_122790 chr5 25525801 25526454 + 0 NA Intergenic Intergenic -3886 ENSMUSG00000101856.1 ENSMUSG00000101856 ENSMUST00000188465 1700096K18Rik lincRNA Interval_57721 chr15 16739172 16740016 + 0 NA intron (ENSMUSG00000025370.7, intron 1 of 11) protein_coding-intron (ENSMUSG00000025370.7, intron 1 of 11) 10838 ENSMUSG00000025370.7 ENSMUSG00000025370 ENSMUST00000026432 Cdh9 protein_coding Interval_20174 chr10 115406410 115406848 + 0 NA intron (ENSMUSG00000034163.10, intron 8 of 34) protein_coding-intron (ENSMUSG00000034163.10, intron 8 of 34) 11879 ENSMUSG00000112822.1 ENSMUSG00000112822 ENSMUST00000218674 A130012E19Rik TEC Interval_112189 chr4 35372511 35373334 + 0 NA Intergenic Intergenic -28136 ENSMUSG00000083934.1 ENSMUSG00000083934 ENSMUST00000122251 Gm12368 processed_pseudogene Interval_26398 chr11 57629180 57629764 + 0 NA intron (ENSMUSG00000085719.1, intron 2 of 3) antisense-intron (ENSMUSG00000085719.1, intron 2 of 3) -15993 ENSMUSG00000020520.14 ENSMUSG00000020520 ENSMUST00000108846 Galnt10 protein_coding Interval_89434 chr2 20665464 20666402 + 0 NA intron (ENSMUSG00000036617.17, intron 5 of 5) protein_coding-intron (ENSMUSG00000036617.17, intron 4 of 18) 47301 ENSMUSG00000086418.1 ENSMUSG00000086418 ENSMUST00000137186 Gm13362 antisense Interval_133249 chr5 150870105 150870357 + 0 NA intron (ENSMUSG00000107047.1, intron 2 of 3) lincRNA-intron (ENSMUSG00000107047.1, intron 2 of 3) 12411 ENSMUSG00000107047.1 ENSMUSG00000107047 ENSMUST00000200887 Gm43298 lincRNA Interval_85072 chr19 22150684 22150957 + 0 NA intron (ENSMUSG00000052387.16, intron 1 of 24) protein_coding-intron (ENSMUSG00000052387.16, intron 1 of 24) 84798 ENSMUSG00000088558.1 ENSMUSG00000088558 ENSMUST00000157933 Gm22506 snoRNA Interval_59120 chr15 44359283 44359916 + 0 NA Intergenic Intergenic -4486 ENSMUSG00000077181.1 ENSMUSG00000077181 ENSMUST00000103993 Gm25093 snoRNA Interval_142294 chr6 140490475 140491662 + 0 NA intron (ENSMUSG00000030231.11, intron 1 of 9) protein_coding-intron (ENSMUSG00000030231.11, intron 3 of 30) -39895 ENSMUSG00000084477.1 ENSMUSG00000084477 ENSMUST00000122528 Gm25780 misc_RNA Interval_165435 chr9 47882648 47883260 + 0 NA Intergenic Intergenic 65207 ENSMUSG00000111668.1 ENSMUSG00000111668 ENSMUST00000215015 Gm47213 processed_pseudogene Interval_75175 chr17 64375258 64376292 + 0 NA Intergenic Intergenic -43888 ENSMUSG00000024083.16 ENSMUSG00000024083 ENSMUST00000232842 Pja2 protein_coding Interval_20071 chr10 113184867 113185187 + 0 NA Intergenic Intergenic 71638 ENSMUSG00000112228.1 ENSMUSG00000112228 ENSMUST00000220016 Gm47524 lincRNA Interval_158854 chr8 87338881 87339197 + 0 NA Intergenic Intergenic 34036 ENSMUSG00000098768.1 ENSMUSG00000098768 ENSMUST00000184995 Gm27207 lincRNA Interval_133108 chr5 149861133 149861902 + 0 NA intron (ENSMUSG00000107214.3, intron 3 of 3) processed_transcript-intron (ENSMUSG00000107214.3, intron 2 of 2) 9892 ENSMUSG00000107279.1 ENSMUSG00000107279 ENSMUST00000202611 Gm43450 lincRNA Interval_60167 chr15 66904071 66904753 + 0 NA intron (ENSMUSG00000005124.10, intron 1 of 4) protein_coding-intron (ENSMUSG00000005124.10, intron 1 of 4) -4852 ENSMUSG00000005124.10 ENSMUSG00000005124 ENSMUST00000133863 Ccn4 protein_coding Interval_165577 chr9 49750816 49752485 + 0 NA intron (ENSMUSG00000039542.16, intron 1 of 1) protein_coding-intron (ENSMUSG00000039542.16, intron 1 of 15) 47272 ENSMUSG00000039542.16 ENSMUSG00000039542 ENSMUST00000217121 Ncam1 protein_coding Interval_99735 chr2 164562181 164564027 + 0 NA promoter-TSS (ENSMUSG00000017723.11) protein_coding-promoter-TSS (ENSMUSG00000017723.11) 691 ENSMUSG00000017723.11 ENSMUSG00000017723 ENSMUST00000125051 Wfdc2 protein_coding Interval_28766 chr11 78182986 78184074 + 0 NA promoter-TSS (ENSMUSG00000065676.1) snoRNA-promoter-TSS (ENSMUSG00000065676.1) -406 ENSMUSG00000065676.1 ENSMUSG00000065676 ENSMUST00000083742 Snord42b snoRNA Interval_145578 chr7 35699574 35699980 + 0 NA intron (ENSMUSG00000043671.14, intron 2 of 4) protein_coding-intron (ENSMUSG00000043671.14, intron 16 of 18) 8788 ENSMUSG00000043671.14 ENSMUSG00000043671 ENSMUST00000124116 Dpy19l3 protein_coding Interval_21143 chr10 126861736 126863833 + 0 NA Intergenic Intergenic -22283 ENSMUSG00000089550.1 ENSMUSG00000089550 ENSMUST00000158925 Gm24179 snoRNA Interval_132124 chr5 142851640 142852468 + 0 NA TTS (ENSMUSG00000082308.1) processed_pseudogene-TTS (ENSMUSG00000082308.1) 1145 ENSMUSG00000082308.1 ENSMUSG00000082308 ENSMUST00000117498 Gm15770 processed_pseudogene Interval_71406 chr17 23563812 23564719 + 0 NA promoter-TSS (ENSMUSG00000071256.4) protein_coding-promoter-TSS (ENSMUSG00000071256.4) -27 ENSMUSG00000071256.4 ENSMUSG00000071256 ENSMUST00000095606 Zfp213 protein_coding Interval_11010 chr1 178351404 178352237 + 0 NA Intergenic Intergenic 11701 ENSMUSG00000099303.1 ENSMUSG00000099303 ENSMUST00000185108 Gm27458 miRNA Interval_148995 chr7 91071880 91073006 + 0 NA intron (ENSMUSG00000052572.19, intron 6 of 27) protein_coding-intron (ENSMUSG00000052572.19, intron 6 of 27) 23444 ENSMUSG00000108956.1 ENSMUSG00000108956 ENSMUST00000208452 Gm45179 TEC Interval_39148 chr12 85444488 85444806 + 0 NA Intergenic Intergenic -8398 ENSMUSG00000113940.1 ENSMUSG00000113940 ENSMUST00000220805 Gm40477 lincRNA Interval_103615 chr3 51199089 51199386 + 0 NA Intergenic Intergenic -32680 ENSMUSG00000103313.1 ENSMUSG00000103313 ENSMUST00000195382 Gm38357 TEC Interval_54911 chr14 76175702 76176084 + 0 NA Intergenic Intergenic 61652 ENSMUSG00000095427.2 ENSMUSG00000095427 ENSMUST00000095471 Rps2-ps6 processed_pseudogene Interval_23828 chr11 26732471 26733485 + 0 NA Intergenic Intergenic 20073 ENSMUSG00000082038.1 ENSMUSG00000082038 ENSMUST00000121968 Gm12071 processed_pseudogene Interval_172495 chrX 21424871 21426438 + 0 NA Intergenic Intergenic -59068 ENSMUSG00000068122.10 ENSMUSG00000068122 ENSMUST00000131150 Agtr2 protein_coding Interval_154821 chr8 23698061 23698287 + 0 NA TTS (ENSMUSG00000109413.1) TEC-TTS (ENSMUSG00000109413.1) 2169 ENSMUSG00000109413.1 ENSMUSG00000109413 ENSMUST00000207763 Gm45165 TEC Interval_168896 chr9 88452553 88452965 + 0 NA exon (ENSMUSG00000032423.12, exon 9 of 9) protein_coding-exon (ENSMUSG00000032423.12, exon 9 of 9) 3857 ENSMUSG00000092541.7 ENSMUSG00000092541 ENSMUST00000154586 Gm20537 protein_coding Interval_107913 chr3 116741759 116743297 + 0 NA TTS (ENSMUSG00000033400.14) protein_coding-TTS (ENSMUSG00000033400.14) -30316 ENSMUSG00000027957.13 ENSMUSG00000027957 ENSMUST00000169530 Slc35a3 protein_coding Interval_47312 chr13 81131707 81132610 + 0 NA intron (ENSMUSG00000069170.14, intron 5 of 7) protein_coding-intron (ENSMUSG00000069170.14, intron 87 of 89) -44594 ENSMUSG00000114836.1 ENSMUSG00000114836 ENSMUST00000224010 Gm18517 transcribed_processed_pseudogene Interval_90335 chr2 29835097 29836311 + 0 NA intron (ENSMUSG00000069020.9, intron 2 of 4) protein_coding-intron (ENSMUSG00000069020.9, intron 2 of 4) 8362 ENSMUSG00000069020.9 ENSMUSG00000069020 ENSMUST00000123021 Urm1 protein_coding Interval_103187 chr3 36489077 36489282 + 0 NA Intergenic Intergenic 13242 ENSMUSG00000027713.6 ENSMUSG00000027713 ENSMUST00000029268 1810062G17Rik protein_coding Interval_82464 chr18 74231610 74231919 + 0 NA Intergenic Intergenic -9126 ENSMUSG00000118151.1 ENSMUSG00000118151 ENSMUST00000238110 Gm5690 processed_pseudogene Interval_106283 chr3 95123961 95124983 + 0 NA promoter-TSS (ENSMUSG00000005628.12) protein_coding-promoter-TSS (ENSMUSG00000005628.12) -3181 ENSMUSG00000005628.12 ENSMUSG00000005628 ENSMUST00000149898 Tmod4 protein_coding Interval_99351 chr2 160020584 160021765 + 0 NA intron (ENSMUSG00000086653.1, intron 1 of 3) lincRNA-intron (ENSMUSG00000086653.1, intron 1 of 3) 4521 ENSMUSG00000086653.1 ENSMUSG00000086653 ENSMUST00000140319 9130015L21Rik lincRNA Interval_154104 chr8 12710424 12712193 + 0 NA intron (ENSMUSG00000074469.6, intron 3 of 3) lincRNA-intron (ENSMUSG00000074469.6, intron 3 of 3) 7819 ENSMUSG00000074469.6 ENSMUSG00000074469 ENSMUST00000151188 Gm15348 lincRNA Interval_147691 chr7 72084378 72085047 + 0 NA intron (ENSMUSG00000032776.9, intron 21 of 22) protein_coding-intron (ENSMUSG00000032776.9, intron 21 of 22) -26049 ENSMUSG00000108427.1 ENSMUSG00000108427 ENSMUST00000205418 Gm36696 antisense Interval_37208 chr12 59791403 59792064 + 0 NA Intergenic Intergenic -71404 ENSMUSG00000112355.1 ENSMUSG00000112355 ENSMUST00000219078 Gm48285 TEC Interval_77153 chr17 86937938 86938171 + 0 NA intron (ENSMUSG00000117457.1, intron 2 of 2) lincRNA-intron (ENSMUSG00000117457.1, intron 2 of 2) 9081 ENSMUSG00000117457.1 ENSMUSG00000117457 ENSMUST00000234807 Gm50011 lincRNA Interval_166549 chr9 60821006 60822998 + 0 NA intron (ENSMUSG00000052143.8, intron 1 of 1) protein_coding-intron (ENSMUSG00000034485.10, intron 1 of 18) 16197 ENSMUSG00000052143.8 ENSMUSG00000052143 ENSMUST00000063858 Gm9869 antisense Interval_3937 chr1 64948827 64950119 + 0 NA intron (ENSMUSG00000051344.13, intron 1 of 8) protein_coding-intron (ENSMUSG00000051344.13, intron 1 of 7) 15071 ENSMUSG00000097264.1 ENSMUSG00000097264 ENSMUST00000181350 Rpl31-ps24 processed_pseudogene Interval_56590 chr14 120588348 120588557 + 0 NA Intergenic Intergenic -44510 ENSMUSG00000115648.1 ENSMUSG00000115648 ENSMUST00000226920 Gm49008 lincRNA Interval_31039 chr11 97830442 97831121 + 0 NA intron (ENSMUSG00000038366.15, intron 4 of 4) protein_coding-intron (ENSMUSG00000038366.15, intron 4 of 6) -10538 ENSMUSG00000050538.8 ENSMUSG00000050538 ENSMUST00000170806 B230217C12Rik protein_coding Interval_53187 chr14 55003769 55004652 + 0 NA Intergenic Intergenic -10519 ENSMUSG00000053093.16 ENSMUSG00000053093 ENSMUST00000226424 Myh7 protein_coding Interval_65443 chr16 22375054 22375314 + 0 NA Intergenic Intergenic 26645 ENSMUSG00000013089.15 ENSMUSG00000013089 ENSMUST00000170393 Etv5 protein_coding Interval_122208 chr5 19845936 19846612 + 0 NA intron (ENSMUSG00000040003.18, intron 2 of 20) protein_coding-intron (ENSMUSG00000040003.18, intron 2 of 22) -246341 ENSMUSG00000096882.1 ENSMUSG00000096882 ENSMUST00000083029 Gm23570 snRNA Interval_146909 chr7 55793253 55794784 + 0 NA promoter-TSS (ENSMUSG00000033790.11) protein_coding-promoter-TSS (ENSMUSG00000033790.11) -147 ENSMUSG00000033790.11 ENSMUSG00000033790 ENSMUST00000206133 Tubgcp5 protein_coding Interval_102509 chr3 27345614 27346141 + 0 NA Intergenic Intergenic -25474 ENSMUSG00000051136.1 ENSMUSG00000051136 ENSMUST00000057186 Ghsr protein_coding Interval_19294 chr10 96230427 96231405 + 0 NA intron (ENSMUSG00000112762.1, intron 2 of 5) lincRNA-intron (ENSMUSG00000112762.1, intron 1 of 2) 4896 ENSMUSG00000112762.1 ENSMUSG00000112762 ENSMUST00000218720 4930459C07Rik lincRNA Interval_48862 chr13 104135468 104135769 + 0 NA intron (ENSMUSG00000042743.13, intron 9 of 9) protein_coding-intron (ENSMUSG00000042743.13, intron 10 of 10) 25845 ENSMUSG00000042743.13 ENSMUSG00000042743 ENSMUST00000159574 Sgtb protein_coding Interval_31985 chr11 104309591 104312141 + 0 NA intron (ENSMUSG00000018411.17, intron 7 of 10) protein_coding-intron (ENSMUSG00000018411.17, intron 8 of 11) -51505 ENSMUSG00000085134.1 ENSMUSG00000085134 ENSMUST00000137561 Gm11659 antisense Interval_32779 chr11 110495504 110496356 + 0 NA intron (ENSMUSG00000020623.11, intron 7 of 9) protein_coding-intron (ENSMUSG00000020623.11, intron 7 of 11) 18553 ENSMUSG00000020623.11 ENSMUSG00000020623 ENSMUST00000133920 Map2k6 protein_coding Interval_83639 chr19 3388271 3389575 + 0 NA promoter-TSS (ENSMUSG00000024905.15) protein_coding-promoter-TSS (ENSMUSG00000024905.15) 38 ENSMUSG00000024905.15 ENSMUSG00000024905 ENSMUST00000142193 Tesmin protein_coding Interval_61057 chr15 78991311 78993466 + 0 NA TTS (ENSMUSG00000033088.19) protein_coding-TTS (ENSMUSG00000033088.19) -9835 ENSMUSG00000099180.1 ENSMUSG00000099180 ENSMUST00000183598 Mir6956 miRNA Interval_97055 chr2 130812461 130813021 + 0 NA TTS (ENSMUSG00000027309.18) protein_coding-TTS (ENSMUSG00000027309.18) -8759 ENSMUSG00000089662.1 ENSMUSG00000089662 ENSMUST00000120631 Gm14057 transcribed_processed_pseudogene Interval_116669 chr4 116563007 116563723 + 0 NA intron (ENSMUSG00000034042.16, intron 1 of 11) protein_coding-intron (ENSMUSG00000034042.16, intron 1 of 11) -10250 ENSMUSG00000055900.14 ENSMUSG00000055900 ENSMUST00000069674 Tmem69 protein_coding Interval_117153 chr4 120096557 120098444 + 0 NA exon (ENSMUSG00000028634.17, exon 4 of 9) protein_coding-exon (ENSMUSG00000028634.17, exon 4 of 9) 32504 ENSMUSG00000115115.1 ENSMUSG00000115115 ENSMUST00000226560 AL607142.1 protein_coding Interval_45880 chr13 58745925 58746834 + 0 NA intron (ENSMUSG00000114384.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000114384.1, intron 1 of 5) -10172 ENSMUSG00000114325.1 ENSMUSG00000114325 ENSMUST00000225684 Rpl13-ps2 processed_pseudogene Interval_70545 chr17 11875898 11876695 + 0 NA intron (ENSMUSG00000023826.16, intron 8 of 10) protein_coding-intron (ENSMUSG00000023826.16, intron 9 of 11) -143951 ENSMUSG00000104466.1 ENSMUSG00000104466 ENSMUST00000194203 Gm10513 TEC Interval_147051 chr7 60035532 60035844 + 0 NA intron (ENSMUSG00000102252.5, intron 2 of 10) protein_coding-intron (ENSMUSG00000102252.5, intron 2 of 10) -30639 ENSMUSG00000102627.1 ENSMUSG00000102627 ENSMUST00000194059 Snurf protein_coding Interval_40896 chr12 109240393 109240579 + 0 NA Intergenic Intergenic 79030 ENSMUSG00000092647.1 ENSMUSG00000092647 ENSMUST00000174906 Gm22234 miRNA Interval_23757 chr11 25938843 25939636 + 0 NA intron (ENSMUSG00000032985.15, intron 2 of 2) protein_coding-intron (ENSMUSG00000032985.15, intron 2 of 6) -170098 ENSMUSG00000032985.15 ENSMUSG00000032985 ENSMUST00000125987 5730522E02Rik protein_coding Interval_17994 chr10 81274358 81274589 + 0 NA exon (ENSMUSG00000034917.8, exon 18 of 21) protein_coding-exon (ENSMUSG00000034917.8, exon 18 of 21) 2876 ENSMUSG00000092781.1 ENSMUSG00000092781 ENSMUST00000175040 Mir3057 miRNA Interval_17350 chr10 76027421 76029468 + 0 NA Intergenic Intergenic -4206 ENSMUSG00000049764.8 ENSMUSG00000049764 ENSMUST00000061617 Zfp280b protein_coding Interval_55876 chr14 101729197 101730505 + 0 NA promoter-TSS (ENSMUSG00000053821.4) bidirectional_promoter_lncRNA-promoter-TSS (ENSMUSG00000053821.4) -36 ENSMUSG00000053821.4 ENSMUSG00000053821 ENSMUST00000066461 Gm9922 bidirectional_promoter_lncRNA Interval_141328 chr6 127268446 127270014 + 0 NA Intergenic Intergenic 13279 ENSMUSG00000081113.1 ENSMUSG00000081113 ENSMUST00000121087 Gm7308 processed_pseudogene Interval_132243 chr5 143565573 143566193 + 0 NA Intergenic Intergenic 17175 ENSMUSG00000083012.9 ENSMUSG00000083012 ENSMUST00000198994 Fam220a protein_coding Interval_73115 chr17 34898223 34900125 + 0 NA promoter-TSS (ENSMUSG00000013787.15) protein_coding-promoter-TSS (ENSMUSG00000013787.15) -3617 ENSMUSG00000024371.14 ENSMUSG00000024371 ENSMUST00000174279 C2 protein_coding Interval_13798 chr10 22594553 22594777 + 0 NA Intergenic Intergenic -54343 ENSMUSG00000037490.5 ENSMUSG00000037490 ENSMUST00000159174 Slc2a12 protein_coding Interval_132748 chr5 147563674 147564687 + 0 NA exon (ENSMUSG00000029648.13, exon 30 of 30) protein_coding-exon (ENSMUSG00000029648.13, exon 30 of 30) 82627 ENSMUSG00000029648.13 ENSMUSG00000029648 ENSMUST00000031652 Flt1 protein_coding Interval_33279 chr11 115679487 115679953 + 0 NA intron (ENSMUSG00000059923.13, intron 2 of 3) protein_coding-intron (ENSMUSG00000059923.13, intron 2 of 5) 20208 ENSMUSG00000059923.13 ENSMUSG00000059923 ENSMUST00000135065 Grb2 protein_coding Interval_25775 chr11 51637732 51638415 + 0 NA Intergenic Intergenic -12239 ENSMUSG00000001054.9 ENSMUSG00000001054 ENSMUST00000132854 Rmnd5b protein_coding Interval_75844 chr17 71750852 71752633 + 0 NA exon (ENSMUSG00000044375.8, exon 1 of 2) protein_coding-exon (ENSMUSG00000044375.8, exon 1 of 2) 1152 ENSMUSG00000044375.8 ENSMUSG00000044375 ENSMUST00000057405 Pcare protein_coding Interval_80881 chr18 49854407 49854644 + 0 NA intron (ENSMUSG00000037416.13, intron 7 of 42) protein_coding-intron (ENSMUSG00000037416.13, intron 7 of 42) -36567 ENSMUSG00000100134.1 ENSMUSG00000100134 ENSMUST00000186872 1700065O20Rik lincRNA Interval_117856 chr4 126655134 126655924 + 0 NA Intergenic Intergenic -9725 ENSMUSG00000081210.1 ENSMUSG00000081210 ENSMUST00000120203 Gm12933 processed_pseudogene Interval_133183 chr5 150394175 150394501 + 0 NA intron (ENSMUSG00000056602.12, intron 21 of 60) protein_coding-intron (ENSMUSG00000056602.12, intron 21 of 60) 47966 ENSMUSG00000118543.1 ENSMUSG00000118543 ENSMUST00000239092 AC154885.1 unprocessed_pseudogene Interval_139708 chr6 107749962 107750344 + 0 NA Intergenic Intergenic 122379 ENSMUSG00000107496.1 ENSMUSG00000107496 ENSMUST00000203905 4933431M02Rik lincRNA Interval_115924 chr4 106315599 106317714 + 0 NA exon (ENSMUSG00000028514.15, exon 1 of 68) protein_coding-exon (ENSMUSG00000028514.15, exon 1 of 68) 443 ENSMUSG00000028514.15 ENSMUSG00000028514 ENSMUST00000150521 Usp24 protein_coding Interval_160742 chr8 111912865 111913622 + 0 NA exon (ENSMUSG00000031951.8, exon 7 of 7) protein_coding-exon (ENSMUSG00000031951.8, exon 7 of 7) -2796 ENSMUSG00000031952.5 ENSMUSG00000031952 ENSMUST00000034430 Chst5 protein_coding Interval_105947 chr3 90242497 90243859 + 0 NA promoter-TSS (ENSMUSG00000027938.11) protein_coding-promoter-TSS (ENSMUSG00000027938.11) -35 ENSMUSG00000027938.11 ENSMUSG00000027938 ENSMUST00000107369 Creb3l4 protein_coding Interval_24621 chr11 35351156 35351667 + 0 NA TTS (ENSMUSG00000086311.1) sense_intronic-TTS (ENSMUSG00000086311.1) 1342 ENSMUSG00000086311.1 ENSMUSG00000086311 ENSMUST00000124503 Gm12122 sense_intronic Interval_126522 chr5 89543591 89543933 + 0 NA intron (ENSMUSG00000035528.4, intron 1 of 3) protein_coding-intron (ENSMUSG00000035528.4, intron 1 of 3) 16333 ENSMUSG00000035528.4 ENSMUSG00000035528 ENSMUST00000048557 Npffr2 protein_coding Interval_130310 chr5 125574651 125576016 + 0 NA intron (ENSMUSG00000070498.3, intron 1 of 8) protein_coding-intron (ENSMUSG00000070498.3, intron 1 of 8) 43559 ENSMUSG00000070498.3 ENSMUSG00000070498 ENSMUST00000184422 Tmem132b protein_coding Interval_36337 chr12 41558717 41560033 + 0 NA intron (ENSMUSG00000056899.10, intron 3 of 5) protein_coding-intron (ENSMUSG00000056899.10, intron 4 of 6) 13984 ENSMUSG00000113766.1 ENSMUSG00000113766 ENSMUST00000222596 Gm47374 TEC Interval_139476 chr6 100424754 100425361 + 0 NA Intergenic Intergenic 69757 ENSMUSG00000087929.1 ENSMUSG00000087929 ENSMUST00000157304 Gm23234 snoRNA Interval_108206 chr3 122473780 122476884 + 0 NA intron (ENSMUSG00000028121.8, intron 3 of 11) protein_coding-intron (ENSMUSG00000028121.8, intron 3 of 11) 10605 ENSMUSG00000087743.1 ENSMUSG00000087743 ENSMUST00000157118 Gm25153 snRNA Interval_27168 chr11 63646932 63647379 + 0 NA Intergenic Intergenic -46232 ENSMUSG00000082256.1 ENSMUSG00000082256 ENSMUST00000119770 Gm12287 processed_pseudogene Interval_108618 chr3 129590180 129592276 + 0 NA intron (ENSMUSG00000041220.10, intron 1 of 2) protein_coding-intron (ENSMUSG00000041220.10, intron 2 of 4) 53087 ENSMUSG00000106092.1 ENSMUSG00000106092 ENSMUST00000200283 Gm43072 TEC Interval_69670 chr16 95142384 95142623 + 0 NA Intergenic Intergenic 29007 ENSMUSG00000116601.1 ENSMUSG00000116601 ENSMUST00000231527 Gm49642 TEC Interval_51968 chr14 34337988 34338253 + 0 NA intron (ENSMUSG00000021794.16, intron 4 of 4) protein_coding-intron (ENSMUSG00000021794.16, intron 9 of 12) 3854 ENSMUSG00000021794.16 ENSMUSG00000021794 ENSMUST00000161593 Glud1 protein_coding Interval_172679 chrX 42057941 42058512 + 0 NA Intergenic Intergenic -1695 ENSMUSG00000025860.15 ENSMUSG00000025860 ENSMUST00000026978 Xiap protein_coding Interval_80873 chr18 49778547 49779056 + 0 NA Intergenic Intergenic 23007 ENSMUSG00000087020.1 ENSMUSG00000087020 ENSMUST00000149935 Gm16283 processed_transcript Interval_6765 chr1 119345471 119345947 + 0 NA intron (ENSMUSG00000101179.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000101179.1, intron 1 of 2) 16509 ENSMUSG00000101179.1 ENSMUSG00000101179 ENSMUST00000186504 Gm29455 lincRNA Interval_173545 chrX 99111343 99111584 + 0 NA Intergenic Intergenic -26668 ENSMUSG00000031217.8 ENSMUSG00000031217 ENSMUST00000151750 Efnb1 protein_coding Interval_67111 chr16 43309881 43310715 + 0 NA intron (ENSMUSG00000022708.16, intron 8 of 8) protein_coding-intron (ENSMUSG00000022708.16, intron 2 of 8) -2017 ENSMUSG00000102967.1 ENSMUSG00000102967 ENSMUST00000192064 Gm37946 TEC Interval_143836 chr7 16633300 16634137 + 0 NA Intergenic Intergenic -9041 ENSMUSG00000064745.1 ENSMUSG00000064745 ENSMUST00000082811 Gm24708 snRNA Interval_166217 chr9 57554150 57555077 + 0 NA Intergenic Intergenic -1904 ENSMUSG00000032306.14 ENSMUSG00000032306 ENSMUST00000124593 Mpi protein_coding Interval_54324 chr14 67689173 67689586 + 0 NA intron (ENSMUSG00000048922.18, intron 13 of 14) protein_coding-intron (ENSMUSG00000048922.18, intron 3 of 4) -14273 ENSMUSG00000093726.1 ENSMUSG00000093726 ENSMUST00000175674 Gm20667 sense_overlapping Interval_164569 chr9 38934683 38935381 + 0 NA Intergenic Intergenic 5070 ENSMUSG00000110964.1 ENSMUSG00000110964 ENSMUST00000216399 Gm20953 processed_pseudogene Interval_174212 chrX 139782207 139783348 + 0 NA promoter-TSS (ENSMUSG00000072945.3) protein_coding-promoter-TSS (ENSMUSG00000072945.3) -424 ENSMUSG00000072945.3 ENSMUSG00000072945 ENSMUST00000101217 Ripply1 protein_coding Interval_5323 chr1 87564603 87564803 + 0 NA intron (ENSMUSG00000026259.14, intron 1 of 14) protein_coding-intron (ENSMUSG00000026259.14, intron 1 of 14) -9324 ENSMUSG00000079434.8 ENSMUSG00000079434 ENSMUST00000070898 Neu2 protein_coding Interval_140968 chr6 123287969 123288202 + 0 NA exon (ENSMUSG00000030142.10, exon 2 of 4) protein_coding-exon (ENSMUSG00000030142.10, exon 2 of 4) 1785 ENSMUSG00000030142.10 ENSMUSG00000030142 ENSMUST00000175954 Clec4e protein_coding Interval_86357 chr19 38963008 38963547 + 0 NA intron (ENSMUSG00000025001.11, intron 19 of 21) protein_coding-intron (ENSMUSG00000025001.11, intron 19 of 21) -13370 ENSMUSG00000114610.1 ENSMUSG00000114610 ENSMUST00000225458 Cyp2c52-ps unprocessed_pseudogene Interval_145453 chr7 34848986 34850246 + 0 NA Intergenic Intergenic 94369 ENSMUSG00000077469.1 ENSMUSG00000077469 ENSMUST00000104281 Gm25922 snoRNA Interval_85936 chr19 33589513 33590494 + 0 NA promoter-TSS (ENSMUSG00000118513.1) unprocessed_pseudogene-promoter-TSS (ENSMUSG00000118513.1) 4 ENSMUSG00000118513.1 ENSMUSG00000118513 ENSMUST00000239059 AC141640.1 unprocessed_pseudogene Interval_75835 chr17 71698229 71698850 + 0 NA intron (ENSMUSG00000045761.16, intron 8 of 19) protein_coding-intron (ENSMUSG00000045761.16, intron 8 of 19) 13734 ENSMUSG00000045761.16 ENSMUSG00000045761 ENSMUST00000129072 Togaram2 protein_coding Interval_141078 chr6 124840982 124841512 + 0 NA promoter-TSS (ENSMUSG00000023439.11) protein_coding-promoter-TSS (ENSMUSG00000023439.11) -4950 ENSMUSG00000023439.11 ENSMUSG00000023439 ENSMUST00000135996 Gnb3 protein_coding Interval_162601 chr9 6058654 6059637 + 0 NA Intergenic Intergenic -11168 ENSMUSG00000111707.1 ENSMUSG00000111707 ENSMUST00000216748 Gm9662 processed_pseudogene Interval_78612 chr18 15171903 15172450 + 0 NA Intergenic Intergenic -22606 ENSMUSG00000117613.1 ENSMUSG00000117613 ENSMUST00000235045 Gm2629 lincRNA Interval_158219 chr8 79993428 79993657 + 0 NA intron (ENSMUSG00000064325.4, intron 7 of 12) protein_coding-intron (ENSMUSG00000064325.4, intron 7 of 12) -3193 ENSMUSG00000064325.4 ENSMUSG00000064325 ENSMUST00000079038 Hhip protein_coding Interval_111329 chr4 19035960 19036768 + 0 NA intron (ENSMUSG00000073991.4, intron 4 of 9) protein_coding-intron (ENSMUSG00000073991.4, intron 4 of 9) 71800 ENSMUSG00000083005.1 ENSMUSG00000083005 ENSMUST00000118014 Gm12392 processed_pseudogene Interval_9556 chr1 159383817 159384455 + 0 NA Intergenic Intergenic 5732 ENSMUSG00000103289.1 ENSMUSG00000103289 ENSMUST00000194705 Gm31256 processed_pseudogene Interval_86787 chr19 43889645 43890984 + 0 NA exon (ENSMUSG00000025195.9, exon 1 of 14) protein_coding-exon (ENSMUSG00000025195.9, exon 1 of 14) -10546 ENSMUSG00000025195.9 ENSMUSG00000025195 ENSMUST00000212157 Dnmbp protein_coding Interval_83803 chr19 4781881 4782373 + 0 NA intron (ENSMUSG00000096370.8, intron 2 of 2) protein_coding-intron (ENSMUSG00000096370.8, intron 2 of 2) 11753 ENSMUSG00000094936.8 ENSMUSG00000094936 ENSMUST00000179820 Rbm4 protein_coding Interval_78221 chr18 10290637 10290977 + 0 NA Intergenic Intergenic 17013 ENSMUSG00000117363.1 ENSMUSG00000117363 ENSMUST00000234780 Gm50033 TEC Interval_47800 chr13 93072681 93073523 + 0 NA promoter-TSS (ENSMUSG00000114382.1) antisense-promoter-TSS (ENSMUSG00000114382.1) -277 ENSMUSG00000114382.1 ENSMUSG00000114382 ENSMUST00000225665 Gm4814 antisense Interval_110517 chr4 3486113 3486480 + 0 NA Intergenic Intergenic 30219 ENSMUSG00000081660.1 ENSMUSG00000081660 ENSMUST00000121996 Gm11787 unprocessed_pseudogene Interval_143241 chr7 4702094 4703856 + 0 NA intron (ENSMUSG00000035390.16, intron 7 of 9) protein_coding-intron (ENSMUSG00000035390.16, intron 7 of 18) 11895 ENSMUSG00000035390.16 ENSMUSG00000035390 ENSMUST00000123637 Brsk1 protein_coding Interval_153820 chr8 8992192 8993011 + 0 NA Intergenic Intergenic -59902 ENSMUSG00000109346.1 ENSMUSG00000109346 ENSMUST00000209045 Gm44515 lincRNA Interval_130370 chr5 126803290 126803459 + 0 NA exon (ENSMUSG00000105316.1, exon 2 of 4) lincRNA-exon (ENSMUSG00000105316.1, exon 2 of 4) 12108 ENSMUSG00000105316.1 ENSMUSG00000105316 ENSMUST00000199363 Gm42953 lincRNA Interval_118963 chr4 134743545 134744571 + 0 NA exon (ENSMUSG00000037295.7, exon 9 of 9) protein_coding-exon (ENSMUSG00000037295.7, exon 9 of 9) 6049 ENSMUSG00000037295.7 ENSMUSG00000037295 ENSMUST00000140678 Ldlrap1 protein_coding Interval_61947 chr15 85414714 85415163 + 0 NA intron (ENSMUSG00000016541.10, intron 9 of 11) protein_coding-intron (ENSMUSG00000016541.10, intron 9 of 11) -63684 ENSMUSG00000064764.1 ENSMUSG00000064764 ENSMUST00000082830 Gm23517 snRNA Interval_92856 chr2 66815523 66815865 + 0 NA Intergenic Intergenic -30780 ENSMUSG00000034810.7 ENSMUSG00000034810 ENSMUST00000042792 Scn7a protein_coding Interval_136446 chr6 54559744 54559995 + 0 NA intron (ENSMUSG00000019124.10, intron 1 of 7) protein_coding-intron (ENSMUSG00000019124.10, intron 1 of 7) 33279 ENSMUSG00000038074.16 ENSMUSG00000038074 ENSMUST00000154907 Fkbp14 protein_coding Interval_60628 chr15 75798502 75799720 + 0 NA intron (ENSMUSG00000075600.3, intron 2 of 6) protein_coding-intron (ENSMUSG00000075600.3, intron 4 of 11) 29098 ENSMUSG00000075600.3 ENSMUSG00000075600 ENSMUST00000229000 Zc3h3 protein_coding Interval_42454 chr13 13718888 13719191 + 0 NA intron (ENSMUSG00000019726.12, intron 5 of 10) protein_coding-intron (ENSMUSG00000019726.12, intron 39 of 52) 34948 ENSMUSG00000019726.12 ENSMUSG00000019726 ENSMUST00000221587 Lyst protein_coding Interval_26681 chr11 59661705 59663172 + 0 NA promoter-TSS (ENSMUSG00000005417.17) protein_coding-promoter-TSS (ENSMUSG00000005417.17) 51853 ENSMUSG00000044061.7 ENSMUSG00000044061 ENSMUST00000055276 Olfr225 polymorphic_pseudogene Interval_43023 chr13 23279443 23279970 + 0 NA intron (ENSMUSG00000085122.1, intron 2 of 3) lincRNA-intron (ENSMUSG00000085488.1, intron 1 of 1) 1356 ENSMUSG00000085122.1 ENSMUSG00000085122 ENSMUST00000156977 4933404K08Rik lincRNA Interval_19667 chr10 107569347 107569877 + 0 NA intron (ENSMUSG00000035916.8, intron 33 of 44) protein_coding-intron (ENSMUSG00000035916.8, intron 33 of 44) -74875 ENSMUSG00000035923.4 ENSMUSG00000035923 ENSMUST00000044210 Myf6 protein_coding Interval_120327 chr4 147904136 147905327 + 0 NA promoter-TSS (ENSMUSG00000029020.13) protein_coding-promoter-TSS (ENSMUSG00000029020.13) -73 ENSMUSG00000029020.13 ENSMUSG00000029020 ENSMUST00000150881 Mfn2 protein_coding Interval_172230 chrX 11289237 11289767 + 0 NA Intergenic Intergenic -9755 ENSMUSG00000100626.1 ENSMUSG00000100626 ENSMUST00000188439 H2al1a protein_coding Interval_34321 chr12 3374738 3375013 + 0 NA intron (ENSMUSG00000020668.10, intron 2 of 8) protein_coding-intron (ENSMUSG00000020668.10, intron 1 of 7) 6446 ENSMUSG00000112655.1 ENSMUSG00000112655 ENSMUST00000220255 Gm48511 TEC Interval_160151 chr8 106742687 106743370 + 0 NA intron (ENSMUSG00000041949.6, intron 13 of 13) protein_coding-intron (ENSMUSG00000041949.6, intron 13 of 17) 59913 ENSMUSG00000041949.6 ENSMUSG00000041949 ENSMUST00000211979 Tango6 protein_coding Interval_78198 chr18 10066750 10067128 + 0 NA intron (ENSMUSG00000024290.9, intron 1 of 1) protein_coding-intron (ENSMUSG00000024290.9, intron 32 of 32) -21834 ENSMUSG00000047879.17 ENSMUSG00000047879 ENSMUST00000150321 Usp14 protein_coding Interval_124844 chr5 56350964 56351350 + 0 NA Intergenic Intergenic -63053 ENSMUSG00000106326.1 ENSMUSG00000106326 ENSMUST00000197497 Gm42977 transcribed_processed_pseudogene Interval_123732 chr5 34991143 34991454 + 0 NA intron (ENSMUSG00000029101.16, intron 1 of 15) protein_coding-intron (ENSMUSG00000029101.16, intron 3 of 16) -23022 ENSMUSG00000029101.16 ENSMUSG00000029101 ENSMUST00000150139 Rgs12 protein_coding Interval_140336 chr6 116668499 116668958 + 0 NA intron (ENSMUSG00000042129.8, intron 1 of 4) protein_coding-intron (ENSMUSG00000042129.8, intron 1 of 10) 5070 ENSMUSG00000042129.8 ENSMUSG00000042129 ENSMUST00000204576 Rassf4 protein_coding Interval_92473 chr2 59991774 59992661 + 0 NA exon (ENSMUSG00000081236.1, exon 1 of 1) processed_pseudogene-exon (ENSMUSG00000081236.1, exon 1 of 1) 127 ENSMUSG00000081236.1 ENSMUSG00000081236 ENSMUST00000120482 Gm13574 processed_pseudogene Interval_163422 chr9 21381526 21381852 + 0 NA intron (ENSMUSG00000032178.14, intron 1 of 20) protein_coding-intron (ENSMUSG00000032178.14, intron 1 of 19) -6863 ENSMUSG00000032178.14 ENSMUSG00000032178 ENSMUST00000214200 Ilf3 protein_coding Interval_103103 chr3 35341938 35342259 + 0 NA Intergenic Intergenic 16484 ENSMUSG00000093499.1 ENSMUSG00000093499 ENSMUST00000177270 Gm25442 miRNA Interval_82216 chr18 69300784 69301159 + 0 NA Intergenic Intergenic 44683 ENSMUSG00000098060.1 ENSMUSG00000098060 ENSMUST00000183237 Gm4842 processed_pseudogene Interval_35197 chr12 17998524 17998894 + 0 NA intron (ENSMUSG00000113642.1, intron 1 of 1) transcribed_unprocessed_pseudogene-intron (ENSMUSG00000113642.1, intron 1 of 1) 5576 ENSMUSG00000113234.1 ENSMUSG00000113234 ENSMUST00000223267 Gm49330 unprocessed_pseudogene Interval_149367 chr7 97747668 97749973 + 0 NA Intergenic Intergenic -10531 ENSMUSG00000042797.9 ENSMUSG00000042797 ENSMUST00000205932 Aqp11 protein_coding Interval_173944 chrX 114694585 114695195 + 0 NA Intergenic Intergenic 32693 ENSMUSG00000081354.1 ENSMUSG00000081354 ENSMUST00000117170 Gm14894 processed_pseudogene Interval_167789 chr9 72715076 72715703 + 0 NA intron (ENSMUSG00000032216.15, intron 9 of 29) protein_coding-intron (ENSMUSG00000032216.15, intron 9 of 28) -1571 ENSMUSG00000104066.1 ENSMUSG00000104066 ENSMUST00000195098 Gm37955 TEC Interval_52316 chr14 44761729 44761970 + 0 NA intron (ENSMUSG00000115321.1, intron 2 of 2) lincRNA-intron (ENSMUSG00000115321.1, intron 2 of 2) 8403 ENSMUSG00000114250.2 ENSMUSG00000114250 ENSMUST00000224861 Gm49142 unprocessed_pseudogene Interval_69023 chr16 90176284 90177672 + 0 NA Intergenic Intergenic 13798 ENSMUSG00000116553.1 ENSMUSG00000116553 ENSMUST00000231626 Gm7307 processed_pseudogene Interval_22642 chr11 12443648 12444525 + 0 NA intron (ENSMUSG00000020173.17, intron 1 of 11) protein_coding-intron (ENSMUSG00000020173.17, intron 1 of 14) -31942 ENSMUSG00000020173.17 ENSMUSG00000020173 ENSMUST00000146067 Cobl protein_coding Interval_118458 chr4 131782774 131783446 + 0 NA TTS (ENSMUSG00000028909.17) protein_coding-TTS (ENSMUSG00000028909.17) 15260 ENSMUSG00000028909.17 ENSMUSG00000028909 ENSMUST00000139641 Ptpru protein_coding Interval_9500 chr1 158031287 158031615 + 0 NA intron (ENSMUSG00000102789.1, intron 2 of 3) TEC-intron (ENSMUSG00000102789.1, intron 2 of 3) 91066 ENSMUSG00000102789.1 ENSMUSG00000102789 ENSMUST00000192097 Gm38256 TEC Interval_121323 chr4 154981514 154981981 + 0 NA TTS (ENSMUSG00000029056.13) protein_coding-TTS (ENSMUSG00000029056.13) 11748 ENSMUSG00000029056.13 ENSMUSG00000029056 ENSMUST00000129386 Pank4 protein_coding Interval_45083 chr13 51974607 51976485 + 0 NA exon (ENSMUSG00000097495.1, exon 3 of 3) lincRNA-exon (ENSMUSG00000097495.1, exon 3 of 3) 2332 ENSMUSG00000097495.1 ENSMUSG00000097495 ENSMUST00000181851 Gm26651 lincRNA Interval_19410 chr10 99020440 99020774 + 0 NA intron (ENSMUSG00000019943.10, intron 5 of 5) protein_coding-intron (ENSMUSG00000019943.10, intron 20 of 20) -18865 ENSMUSG00000112660.1 ENSMUSG00000112660 ENSMUST00000219298 Gm48761 TEC Interval_89895 chr2 26298093 26299701 + 0 NA Intergenic Intergenic -4459 ENSMUSG00000048038.8 ENSMUSG00000048038 ENSMUST00000057224 Ccdc187 protein_coding Interval_7165 chr1 127397002 127397667 + 0 NA intron (ENSMUSG00000036155.13, intron 10 of 10) protein_coding-intron (ENSMUSG00000036155.13, intron 10 of 17) -9442 ENSMUSG00000103390.1 ENSMUSG00000103390 ENSMUST00000195573 Gm38301 TEC Interval_125526 chr5 68295607 68296440 + 0 NA Intergenic Intergenic 18551 ENSMUSG00000107289.1 ENSMUSG00000107289 ENSMUST00000202972 Gm43026 processed_pseudogene Interval_48468 chr13 99238699 99239840 + 0 NA intron (ENSMUSG00000050919.9, intron 3 of 4) protein_coding-intron (ENSMUSG00000050919.9, intron 3 of 4) 54446 ENSMUSG00000050919.9 ENSMUSG00000050919 ENSMUST00000056558 Zfp366 protein_coding Interval_113531 chr4 55615601 55615912 + 0 NA intron (ENSMUSG00000085375.1, intron 4 of 4) lincRNA-intron (ENSMUSG00000085375.1, intron 4 of 4) 10607 ENSMUSG00000085375.1 ENSMUSG00000085375 ENSMUST00000123620 Gm12506 lincRNA Interval_33704 chr11 117995980 117996738 + 0 NA intron (ENSMUSG00000017715.11, intron 1 of 9) protein_coding-intron (ENSMUSG00000017715.11, intron 1 of 9) -5911 ENSMUSG00000098958.1 ENSMUSG00000098958 ENSMUST00000184982 Mir6933 miRNA Interval_103264 chr3 37642760 37643682 + 0 NA exon (ENSMUSG00000037211.12, exon 3 of 3) protein_coding-exon (ENSMUSG00000037211.12, exon 3 of 3) -1386 ENSMUSG00000106062.1 ENSMUSG00000106062 ENSMUST00000199414 Gm43820 TEC Interval_58925 chr15 40067319 40068283 + 0 NA intron (ENSMUSG00000115142.1, intron 2 of 2) lincRNA-intron (ENSMUSG00000115142.1, intron 2 of 2) 22610 ENSMUSG00000115142.1 ENSMUSG00000115142 ENSMUST00000227360 Gm33251 lincRNA Interval_38312 chr12 77060015 77061649 + 0 NA Intergenic Intergenic -18631 ENSMUSG00000112030.1 ENSMUSG00000112030 ENSMUST00000219319 Gm35189 lincRNA Interval_125899 chr5 75523028 75523783 + 0 NA Intergenic Intergenic 37745 ENSMUSG00000089078.1 ENSMUSG00000089078 ENSMUST00000158453 Gm24502 snRNA Interval_66583 chr16 35363122 35364624 + 0 NA promoter-TSS (ENSMUSG00000034473.14) protein_coding-promoter-TSS (ENSMUSG00000034473.14) -2112 ENSMUSG00000034473.14 ENSMUSG00000034473 ENSMUST00000141087 Sec22a protein_coding Interval_101365 chr2 180795900 180796907 + 0 NA Intergenic Intergenic -19503 ENSMUSG00000045493.4 ENSMUSG00000045493 ENSMUST00000108878 Bhlhe23 protein_coding Interval_154913 chr8 25011110 25012103 + 0 NA intron (ENSMUSG00000031555.15, intron 1 of 21) protein_coding-intron (ENSMUSG00000031555.15, intron 1 of 22) -5653 ENSMUSG00000031556.6 ENSMUSG00000031556 ENSMUST00000210536 Tm2d2 protein_coding Interval_62955 chr15 98153740 98156556 + 0 NA intron (ENSMUSG00000048175.13, intron 1 of 3) protein_coding-intron (ENSMUSG00000048175.13, intron 2 of 4) 10477 ENSMUSG00000048175.13 ENSMUSG00000048175 ENSMUST00000123922 Asb8 protein_coding Interval_5997 chr1 93803524 93804510 + 0 NA promoter-TSS (ENSMUSG00000026283.13) protein_coding-promoter-TSS (ENSMUSG00000026283.13) -328 ENSMUSG00000026283.13 ENSMUSG00000026283 ENSMUST00000190476 Ing5 protein_coding Interval_87108 chr19 46169801 46170336 + 0 NA intron (ENSMUSG00000025224.16, intron 2 of 2) protein_coding-intron (ENSMUSG00000025224.16, intron 2 of 39) 17488 ENSMUSG00000025224.16 ENSMUSG00000025224 ENSMUST00000176046 Gbf1 protein_coding Interval_11234 chr1 180358908 180359230 + 0 NA exon (ENSMUSG00000104388.1, exon 1 of 1) TEC-exon (ENSMUSG00000104388.1, exon 1 of 1) 1420 ENSMUSG00000104388.1 ENSMUSG00000104388 ENSMUST00000193199 Gm37033 TEC Interval_5705 chr1 91094991 91095579 + 0 NA intron (ENSMUSG00000026305.15, intron 12 of 24) protein_coding-intron (ENSMUSG00000026305.15, intron 2 of 12) 41699 ENSMUSG00000026305.15 ENSMUSG00000026305 ENSMUST00000187532 Lrrfip1 protein_coding Interval_162982 chr9 14157927 14158778 + 0 NA Intergenic Intergenic -45731 ENSMUSG00000111803.1 ENSMUSG00000111803 ENSMUST00000216569 Gm47564 lincRNA Interval_69548 chr16 94162043 94163023 + 0 NA intron (ENSMUSG00000040820.16, intron 2 of 6) protein_coding-intron (ENSMUSG00000040820.16, intron 5 of 9) 6878 ENSMUSG00000076304.1 ENSMUSG00000076304 ENSMUST00000102349 Gm23062 miRNA Interval_151857 chr7 127146637 127146976 + 0 NA Intergenic Intergenic -8263 ENSMUSG00000108362.1 ENSMUSG00000108362 ENSMUST00000206027 Gm18561 processed_pseudogene Interval_129418 chr5 119922249 119922654 + 0 NA Intergenic Intergenic 7513 ENSMUSG00000107084.1 ENSMUSG00000107084 ENSMUST00000202075 Gm43269 lincRNA Interval_91058 chr2 34742502 34743346 + 0 NA intron (ENSMUSG00000026867.18, intron 1 of 3) protein_coding-intron (ENSMUSG00000026867.18, intron 1 of 25) -30742 ENSMUSG00000026864.13 ENSMUSG00000026864 ENSMUST00000129333 Hspa5 protein_coding Interval_20955 chr10 122757824 122758111 + 0 NA exon (ENSMUSG00000112417.1, exon 1 of 1) protein_coding-intron (ENSMUSG00000034613.12, intron 1 of 3) 443 ENSMUSG00000112417.1 ENSMUSG00000112417 ENSMUST00000219095 A430028G04Rik TEC Interval_101005 chr2 174168347 174168768 + 0 NA intron (ENSMUSG00000074555.5, intron 1 of 3) antisense-intron (ENSMUSG00000074555.5, intron 1 of 3) -42669 ENSMUSG00000074555.5 ENSMUSG00000074555 ENSMUST00000166709 Gm10714 antisense Interval_18924 chr10 93179682 93180264 + 0 NA intron (ENSMUSG00000020015.10, intron 1 of 6) protein_coding-intron (ENSMUSG00000020015.10, intron 1 of 16) 17188 ENSMUSG00000089214.1 ENSMUSG00000089214 ENSMUST00000158589 Mir1931 miRNA Interval_173276 chrX 75843110 75843439 + 0 NA promoter-TSS (ENSMUSG00000016382.15) protein_coding-promoter-TSS (ENSMUSG00000016382.15) -89 ENSMUSG00000016382.15 ENSMUSG00000016382 ENSMUST00000126599 Pls3 protein_coding Interval_20577 chr10 119160753 119160947 + 0 NA intron (ENSMUSG00000112161.1, intron 1 of 5) lincRNA-intron (ENSMUSG00000112161.1, intron 1 of 5) 5535 ENSMUSG00000112161.1 ENSMUSG00000112161 ENSMUST00000217700 Gm34045 lincRNA Interval_100176 chr2 167478021 167478551 + 0 NA Intergenic Intergenic 14559 ENSMUSG00000047030.15 ENSMUSG00000047030 ENSMUST00000154770 Spata2 protein_coding Interval_125968 chr5 76333902 76334415 + 0 NA intron (ENSMUSG00000029236.4, intron 9 of 9) protein_coding-intron (ENSMUSG00000029236.4, intron 9 of 9) 2920 ENSMUSG00000087037.1 ENSMUSG00000087037 ENSMUST00000132154 4930432L08Rik processed_transcript Interval_18259 chr10 84388524 84389889 + 0 NA intron (ENSMUSG00000020032.14, intron 1 of 3) protein_coding-intron (ENSMUSG00000020032.14, intron 4 of 6) 3182 ENSMUSG00000020032.14 ENSMUSG00000020032 ENSMUST00000129355 Nuak1 protein_coding Interval_164694 chr9 40638123 40639197 + 0 NA Intergenic Intergenic -22274 ENSMUSG00000111504.1 ENSMUSG00000111504 ENSMUST00000216936 Gm48284 lincRNA Interval_166126 chr9 56886275 56886559 + 0 NA exon (ENSMUSG00000032911.6, exon 3 of 10) protein_coding-exon (ENSMUSG00000032911.6, exon 3 of 10) -9906 ENSMUSG00000032911.6 ENSMUSG00000032911 ENSMUST00000217052 Cspg4 protein_coding Interval_68119 chr16 65372452 65372932 + 0 NA Intergenic Intergenic 33574 ENSMUSG00000116687.1 ENSMUSG00000116687 ENSMUST00000232590 Gm49629 processed_pseudogene Interval_138175 chr6 85904256 85905152 + 0 NA intron (ENSMUSG00000068299.11, intron 1 of 3) protein_coding-intron (ENSMUSG00000068299.11, intron 1 of 3) -2171 ENSMUSG00000068299.11 ENSMUSG00000068299 ENSMUST00000095757 Nat8f4 protein_coding Interval_24435 chr11 33240728 33241036 + 0 NA intron (ENSMUSG00000040594.19, intron 25 of 27) protein_coding-intron (ENSMUSG00000040594.19, intron 25 of 27) 35855 ENSMUSG00000098456.1 ENSMUSG00000098456 ENSMUST00000183831 Gm12117 protein_coding Interval_74351 chr17 49275576 49275790 + 0 NA Intergenic Intergenic -17059 ENSMUSG00000064541.1 ENSMUSG00000064541 ENSMUST00000082607 Gm22978 snRNA Interval_52579 chr14 47648912 47650437 + 0 NA intron (ENSMUSG00000021843.17, intron 1 of 40) protein_coding-intron (ENSMUSG00000021843.17, intron 1 of 1) -14113 ENSMUSG00000021843.17 ENSMUSG00000021843 ENSMUST00000190857 Ktn1 protein_coding Interval_169930 chr9 103027347 103027833 + 0 NA intron (ENSMUSG00000032548.14, intron 1 of 13) protein_coding-intron (ENSMUSG00000032548.14, intron 1 of 13) -5124 ENSMUSG00000077438.1 ENSMUSG00000077438 ENSMUST00000104250 Gm22595 snoRNA Interval_79662 chr18 34322302 34323683 + 0 NA TTS (ENSMUSG00000005871.15) protein_coding-TTS (ENSMUSG00000005871.15) -8184 ENSMUSG00000014504.16 ENSMUSG00000014504 ENSMUST00000142010 Srp19 protein_coding Interval_151487 chr7 123029793 123031625 + 0 NA promoter-TSS (ENSMUSG00000109814.1) lincRNA-promoter-TSS (ENSMUSG00000109814.1) -665 ENSMUSG00000110230.1 ENSMUSG00000110230 ENSMUST00000211170 Gm45846 lincRNA Interval_9486 chr1 157612631 157612868 + 0 NA Intergenic Intergenic -8523 ENSMUSG00000102245.1 ENSMUSG00000102245 ENSMUST00000191746 Gm37713 processed_pseudogene Interval_76230 chr17 78237287 78238292 + 0 NA promoter-TSS (ENSMUSG00000024074.8) protein_coding-promoter-TSS (ENSMUSG00000024074.8) 17 ENSMUSG00000024074.8 ENSMUSG00000024074 ENSMUST00000234439 Crim1 protein_coding Interval_100486 chr2 169510449 169510994 + 0 NA Intergenic Intergenic 30104 ENSMUSG00000087074.1 ENSMUSG00000087074 ENSMUST00000156239 Gm14249 lincRNA Interval_37819 chr12 72253141 72253360 + 0 NA intron (ENSMUSG00000021087.18, intron 3 of 8) protein_coding-intron (ENSMUSG00000021087.18, intron 3 of 8) -16702 ENSMUSG00000021087.18 ENSMUSG00000021087 ENSMUST00000221756 Rtn1 protein_coding Interval_128938 chr5 116194232 116194798 + 0 NA intron (ENSMUSG00000043913.14, intron 2 of 5) protein_coding-intron (ENSMUSG00000043913.14, intron 2 of 13) -49191 ENSMUSG00000086122.1 ENSMUSG00000086122 ENSMUST00000156169 Gm14507 antisense Interval_90273 chr2 29481289 29482409 + 0 NA intron (ENSMUSG00000026799.15, intron 4 of 4) protein_coding-intron (ENSMUSG00000026799.15, intron 4 of 7) -6555 ENSMUSG00000098539.1 ENSMUSG00000098539 ENSMUST00000184068 Mir133c miRNA Interval_56339 chr14 117847114 117847417 + 0 NA intron (ENSMUSG00000058571.11, intron 4 of 9) protein_coding-intron (ENSMUSG00000058571.11, intron 4 of 8) 106582 ENSMUSG00000098648.1 ENSMUSG00000098648 ENSMUST00000183564 Mir6239 miRNA Interval_67599 chr16 52070101 52070341 + 0 NA intron (ENSMUSG00000022637.11, intron 1 of 16) protein_coding-intron (ENSMUSG00000022637.11, intron 3 of 17) 34926 ENSMUSG00000095977.1 ENSMUSG00000095977 ENSMUST00000158181 Gm23513 snoRNA Interval_148252 chr7 80098128 80099181 + 0 NA promoter-TSS (ENSMUSG00000030541.16) protein_coding-promoter-TSS (ENSMUSG00000030541.16) -8223 ENSMUSG00000108655.1 ENSMUSG00000108655 ENSMUST00000206423 Gm44949 antisense Interval_124492 chr5 49064382 49064748 + 0 NA intron (ENSMUSG00000029088.16, intron 1 of 8) protein_coding-intron (ENSMUSG00000029088.16, intron 1 of 8) -5438 ENSMUSG00000105620.1 ENSMUSG00000105620 ENSMUST00000200089 Gm43047 TEC Interval_64796 chr16 15862279 15863609 + 0 NA promoter-TSS (ENSMUSG00000022671.13) protein_coding-promoter-TSS (ENSMUSG00000022671.13) 366 ENSMUSG00000022671.13 ENSMUSG00000022671 ENSMUST00000117136 Mzt2 protein_coding Interval_145152 chr7 30314334 30315416 + 0 NA promoter-TSS (ENSMUSG00000019737.14) protein_coding-promoter-TSS (ENSMUSG00000019737.14) -2891 ENSMUSG00000019737.14 ENSMUSG00000019737 ENSMUST00000177395 Syne4 protein_coding Interval_139297 chr6 98034275 98035007 + 0 NA Intergenic Intergenic 42720 ENSMUSG00000035158.15 ENSMUSG00000035158 ENSMUST00000203938 Mitf protein_coding Interval_29288 chr11 82699366 82699592 + 0 NA Intergenic Intergenic -25664 ENSMUSG00000083203.1 ENSMUSG00000083203 ENSMUST00000122124 Gm11421 processed_pseudogene Interval_82718 chr18 76170675 76172512 + 0 NA TTS (ENSMUSG00000098276.1) miRNA-TTS (ENSMUSG00000098276.1) 1041 ENSMUSG00000098276.1 ENSMUSG00000098276 ENSMUST00000184549 Mir6358 miRNA Interval_83643 chr19 3429248 3429749 + 0 NA Intergenic Intergenic -14954 ENSMUSG00000024907.7 ENSMUSG00000024907 ENSMUST00000025842 Gal protein_coding Interval_91840 chr2 50159593 50160271 + 0 NA intron (ENSMUSG00000050447.15, intron 1 of 4) protein_coding-intron (ENSMUSG00000050447.15, intron 2 of 5) 31563 ENSMUSG00000050447.15 ENSMUSG00000050447 ENSMUST00000126337 Lypd6 protein_coding Interval_15791 chr10 56771440 56772286 + 0 NA Intergenic Intergenic 57444 ENSMUSG00000112191.1 ENSMUSG00000112191 ENSMUST00000219666 Gm31931 processed_pseudogene Interval_73078 chr17 34646534 34647673 + 0 NA promoter-TSS (ENSMUSG00000015461.15) protein_coding-promoter-TSS (ENSMUSG00000015461.15) -98 ENSMUSG00000015461.15 ENSMUSG00000015461 ENSMUST00000174156 Atf6b protein_coding Interval_25425 chr11 48131493 48131773 + 0 NA Intergenic Intergenic 158680 ENSMUSG00000081952.1 ENSMUSG00000081952 ENSMUST00000120545 Gm12178 processed_pseudogene Interval_130599 chr5 129109038 129109287 + 0 NA intron (ENSMUSG00000044017.16, intron 2 of 24) protein_coding-intron (ENSMUSG00000044017.16, intron 2 of 25) 12405 ENSMUSG00000044017.16 ENSMUSG00000044017 ENSMUST00000156437 Adgrd1 protein_coding Interval_120671 chr4 150015320 150016450 + 0 NA Intergenic Intergenic -14620 ENSMUSG00000028980.14 ENSMUSG00000028980 ENSMUST00000152907 H6pd protein_coding Interval_48028 chr13 95374519 95375773 + 0 NA exon (ENSMUSG00000021681.8, exon 1 of 14) protein_coding-exon (ENSMUSG00000021681.8, exon 1 of 14) 188 ENSMUSG00000021681.8 ENSMUSG00000021681 ENSMUST00000161671 Aggf1 protein_coding Interval_132710 chr5 147319739 147320840 + 0 NA intron (ENSMUSG00000075543.4, intron 1 of 1) protein_coding-intron (ENSMUSG00000075543.4, intron 1 of 1) 2151 ENSMUSG00000075543.4 ENSMUSG00000075543 ENSMUST00000100433 Urad protein_coding Interval_19043 chr10 94020664 94021012 + 0 NA promoter-TSS (ENSMUSG00000036099.16) protein_coding-promoter-TSS (ENSMUSG00000036099.16) -7243 ENSMUSG00000111349.1 ENSMUSG00000111349 ENSMUST00000216926 Gm48191 processed_pseudogene Interval_120266 chr4 145042600 145044127 + 0 NA intron (ENSMUSG00000020220.16, intron 47 of 51) protein_coding-intron (ENSMUSG00000020220.16, intron 63 of 67) -84515 ENSMUSG00000103911.1 ENSMUSG00000103911 ENSMUST00000193467 Gm38074 TEC Interval_62177 chr15 88600408 88601222 + 0 NA exon (ENSMUSG00000054117.8, exon 1 of 1) protein_coding-exon (ENSMUSG00000054117.8, exon 1 of 1) 513 ENSMUSG00000054117.8 ENSMUSG00000054117 ENSMUST00000066949 Zdhhc25 protein_coding Interval_73786 chr17 43639607 43640053 + 0 NA Intergenic Intergenic -9564 ENSMUSG00000040140.15 ENSMUSG00000040140 ENSMUST00000233077 Tdrd6 protein_coding Interval_98367 chr2 151874687 151875008 + 0 NA TTS (ENSMUSG00000032852.3) protein_coding-TTS (ENSMUSG00000032852.3) -7887 ENSMUSG00000086620.1 ENSMUSG00000086620 ENSMUST00000152229 Rspo4os antisense Interval_51120 chr14 23645341 23645905 + 0 NA intron (ENSMUSG00000063142.15, intron 3 of 16) protein_coding-intron (ENSMUSG00000063142.15, intron 2 of 28) 85375 ENSMUSG00000100100.1 ENSMUSG00000100100 ENSMUST00000187439 Gm29626 antisense Interval_90921 chr2 33482666 33482882 + 0 NA Intergenic Intergenic -7008 ENSMUSG00000086939.1 ENSMUSG00000086939 ENSMUST00000134014 Gm13530 lincRNA Interval_16860 chr10 69318420 69319073 + 0 NA Intergenic Intergenic 6607 ENSMUSG00000112798.1 ENSMUSG00000112798 ENSMUST00000217861 Gm40685 lincRNA Interval_131894 chr5 140648453 140649719 + 0 NA promoter-TSS (ENSMUSG00000036565.7) protein_coding-promoter-TSS (ENSMUSG00000036565.7) -89 ENSMUSG00000036565.7 ENSMUSG00000036565 ENSMUST00000200302 Ttyh3 protein_coding Interval_133250 chr5 150872975 150873370 + 0 NA intron (ENSMUSG00000107047.1, intron 2 of 3) lincRNA-intron (ENSMUSG00000107047.1, intron 2 of 3) 9470 ENSMUSG00000107047.1 ENSMUSG00000107047 ENSMUST00000200887 Gm43298 lincRNA Interval_71727 chr17 25716519 25718406 + 0 NA promoter-TSS (ENSMUSG00000025739.13) protein_coding-promoter-TSS (ENSMUSG00000025739.13) 291 ENSMUSG00000025739.13 ENSMUSG00000025739 ENSMUST00000115108 Gng13 protein_coding Interval_138356 chr6 87564207 87565544 + 0 NA Intergenic Intergenic 25868 ENSMUSG00000049409.9 ENSMUSG00000049409 ENSMUST00000203636 Prokr1 protein_coding Interval_17982 chr10 81229776 81231244 + 0 NA exon (ENSMUSG00000034958.11, exon 1 of 13) protein_coding-exon (ENSMUSG00000034958.11, exon 1 of 13) 275 ENSMUSG00000034958.11 ENSMUSG00000034958 ENSMUST00000133555 Atcay protein_coding Interval_57396 chr15 10572932 10573307 + 0 NA intron (ENSMUSG00000022246.14, intron 14 of 16) protein_coding-intron (ENSMUSG00000022246.14, intron 15 of 17) -11595 ENSMUSG00000052482.6 ENSMUSG00000052482 ENSMUST00000064353 Gm8174 processed_pseudogene Interval_99261 chr2 158510667 158511836 + 0 NA Intergenic Intergenic -1545 ENSMUSG00000074625.10 ENSMUSG00000074625 ENSMUST00000135838 Arhgap40 protein_coding Interval_136284 chr6 52501274 52501821 + 0 NA Intergenic Intergenic -8342 ENSMUSG00000108062.1 ENSMUSG00000108062 ENSMUST00000205205 Gm44028 lincRNA Interval_13361 chr10 17176979 17177458 + 0 NA Intergenic Intergenic 60414 ENSMUSG00000088436.1 ENSMUSG00000088436 ENSMUST00000157811 Gm25382 snRNA Interval_90439 chr2 30452314 30452559 + 0 NA Intergenic Intergenic 21783 ENSMUSG00000089762.3 ENSMUSG00000089762 ENSMUST00000065134 Ier5l protein_coding Interval_41587 chr12 116583767 116584456 + 0 NA intron (ENSMUSG00000056553.14, intron 2 of 4) protein_coding-intron (ENSMUSG00000056553.14, intron 2 of 22) -13142 ENSMUSG00000101814.1 ENSMUSG00000101814 ENSMUST00000186869 Gm17807 processed_pseudogene Interval_28741 chr11 78019523 78020120 + 0 NA intron (ENSMUSG00000037791.15, intron 7 of 10) protein_coding-intron (ENSMUSG00000037791.15, intron 7 of 14) -3808 ENSMUSG00000037791.15 ENSMUSG00000037791 ENSMUST00000125079 Phf12 protein_coding Interval_36426 chr12 44438886 44439269 + 0 NA promoter-TSS (ENSMUSG00000020598.16) protein_coding-promoter-TSS (ENSMUSG00000020598.16) 29287 ENSMUSG00000112448.1 ENSMUSG00000112448 ENSMUST00000218248 Gm48182 TEC Interval_62127 chr15 87602651 87602929 + 0 NA intron (ENSMUSG00000054863.9, intron 1 of 3) protein_coding-intron (ENSMUSG00000054863.9, intron 1 of 3) 58491 ENSMUSG00000054863.9 ENSMUSG00000054863 ENSMUST00000068088 Tafa5 protein_coding Interval_115905 chr4 106161467 106162046 + 0 NA Intergenic Intergenic -23978 ENSMUSG00000081189.1 ENSMUSG00000081189 ENSMUST00000121815 Hspd1-ps4 processed_pseudogene Interval_63190 chr15 99651177 99654231 + 0 NA Intergenic Intergenic -1092 ENSMUSG00000023015.14 ENSMUSG00000023015 ENSMUST00000109581 Racgap1 protein_coding Interval_126247 chr5 83994298 83994661 + 0 NA Intergenic Intergenic -128834 ENSMUSG00000079067.5 ENSMUSG00000079067 ENSMUST00000120716 Hmgn2-ps1 processed_pseudogene Interval_164000 chr9 30719908 30720295 + 0 NA Intergenic Intergenic 32781 ENSMUSG00000111249.1 ENSMUSG00000111249 ENSMUST00000215919 Gm47717 processed_pseudogene Interval_151165 chr7 118943021 118943806 + 0 NA intron (ENSMUSG00000073856.11, intron 7 of 7) protein_coding-intron (ENSMUSG00000073856.11, intron 8 of 8) 26273 ENSMUSG00000109517.1 ENSMUSG00000109517 ENSMUST00000208287 Gm44763 antisense Interval_161560 chr8 121215145 121215437 + 0 NA intron (ENSMUSG00000092329.1, intron 1 of 15) protein_coding-intron (ENSMUSG00000092329.1, intron 1 of 15) -11689 ENSMUSG00000097097.2 ENSMUSG00000097097 ENSMUST00000212635 5033426O07Rik lincRNA Interval_104682 chr3 69376548 69377595 + 0 NA intron (ENSMUSG00000027784.10, intron 1 of 3) protein_coding-intron (ENSMUSG00000027784.10, intron 1 of 3) -41311 ENSMUSG00000090941.1 ENSMUSG00000090941 ENSMUST00000166666 Gm17212 processed_pseudogene Interval_158094 chr8 78677958 78678163 + 0 NA intron (ENSMUSG00000031684.11, intron 6 of 10) protein_coding-intron (ENSMUSG00000031684.11, intron 6 of 11) 73766 ENSMUSG00000110244.1 ENSMUSG00000110244 ENSMUST00000211775 Gm2253 processed_pseudogene Interval_57267 chr15 8243443 8243837 + 0 NA intron (ENSMUSG00000039801.7, intron 39 of 52) protein_coding-intron (ENSMUSG00000039801.7, intron 39 of 52) 20497 ENSMUSG00000039801.7 ENSMUSG00000039801 ENSMUST00000128772 Cplane1 protein_coding Interval_63022 chr15 98688227 98688818 + 0 NA Intergenic Intergenic 7669 ENSMUSG00000116482.1 ENSMUSG00000116482 ENSMUST00000230172 Gm34152 lincRNA Interval_118881 chr4 134237728 134239391 + 0 NA promoter-TSS (ENSMUSG00000028841.14) protein_coding-promoter-TSS (ENSMUSG00000028841.14) -5204 ENSMUSG00000086322.7 ENSMUSG00000086322 ENSMUST00000134320 E130218I03Rik protein_coding Interval_104171 chr3 59539662 59541303 + 0 NA Intergenic Intergenic -5256 ENSMUSG00000103598.1 ENSMUSG00000103598 ENSMUST00000192696 Gm4856 unprocessed_pseudogene Interval_6396 chr1 106883880 106884290 + 0 NA TTS (ENSMUSG00000067006.12) protein_coding-TTS (ENSMUSG00000067006.12) 4812 ENSMUSG00000083613.1 ENSMUSG00000083613 ENSMUST00000120271 Pou2f3-rs1 processed_pseudogene Interval_136861 chr6 61674979 61675678 + 0 NA intron (ENSMUSG00000039578.17, intron 4 of 4) protein_coding-intron (ENSMUSG00000039578.17, intron 6 of 9) 274721 ENSMUSG00000107757.1 ENSMUSG00000107757 ENSMUST00000204456 Gm43898 processed_pseudogene Interval_82965 chr18 80046638 80048157 + 0 NA intron (ENSMUSG00000056214.9, intron 1 of 2) protein_coding-intron (ENSMUSG00000056214.9, intron 1 of 2) 507 ENSMUSG00000056214.9 ENSMUSG00000056214 ENSMUST00000070219 Pard6g protein_coding Interval_29418 chr11 83863834 83865632 + 0 NA TTS (ENSMUSG00000020679.11) protein_coding-TTS (ENSMUSG00000020679.11) 12491 ENSMUSG00000020679.11 ENSMUSG00000020679 ENSMUST00000108113 Hnf1b protein_coding Interval_70863 chr17 15459749 15459987 + 0 NA promoter-TSS (ENSMUSG00000116985.1) processed_pseudogene-promoter-TSS (ENSMUSG00000116985.1) 63 ENSMUSG00000116985.1 ENSMUSG00000116985 ENSMUST00000231639 Gm49669 processed_pseudogene Interval_34222 chr11 121378720 121379428 + 0 NA intron (ENSMUSG00000025170.13, intron 1 of 2) protein_coding-intron (ENSMUSG00000025170.13, intron 1 of 5) 8130 ENSMUSG00000098981.1 ENSMUSG00000098981 ENSMUST00000184435 Mir7236 miRNA Interval_154714 chr8 22794088 22795478 + 0 NA intron (ENSMUSG00000031539.6, intron 4 of 8) protein_coding-intron (ENSMUSG00000031539.6, intron 4 of 8) 10839 ENSMUSG00000031539.6 ENSMUSG00000031539 ENSMUST00000210476 Ap3m2 protein_coding Interval_85532 chr19 28156551 28157133 + 0 NA Intergenic Intergenic -10539 ENSMUSG00000117862.1 ENSMUSG00000117862 ENSMUST00000236360 Gm35781 processed_pseudogene Interval_151724 chr7 126265908 126266278 + 0 NA intron (ENSMUSG00000042978.11, intron 1 of 3) protein_coding-intron (ENSMUSG00000042978.11, intron 1 of 3) 17231 ENSMUSG00000042978.11 ENSMUSG00000042978 ENSMUST00000206541 Sbk1 protein_coding Interval_45465 chr13 55288498 55289100 + 0 NA intron (ENSMUSG00000021488.8, intron 10 of 20) protein_coding-intron (ENSMUSG00000021488.8, intron 12 of 22) 33147 ENSMUSG00000034789.8 ENSMUSG00000034789 ENSMUST00000223672 Rab24 protein_coding Interval_5131 chr1 85907658 85909367 + 0 NA TTS (ENSMUSG00000026223.15) protein_coding-TTS (ENSMUSG00000026223.15) 13893 ENSMUSG00000026223.15 ENSMUSG00000026223 ENSMUST00000139837 Itm2c protein_coding Interval_131198 chr5 135753860 135754891 + 0 NA intron (ENSMUSG00000019178.17, intron 7 of 8) protein_coding-intron (ENSMUSG00000019178.17, intron 7 of 8) -17139 ENSMUSG00000039886.8 ENSMUSG00000039886 ENSMUST00000153399 Tmem120a protein_coding Interval_89869 chr2 26110370 26110536 + 0 NA intron (ENSMUSG00000026932.14, intron 1 of 2) protein_coding-intron (ENSMUSG00000026932.14, intron 1 of 5) -18634 ENSMUSG00000026932.14 ENSMUSG00000026932 ENSMUST00000149408 Nacc2 protein_coding Interval_92680 chr2 62458358 62459072 + 0 NA intron (ENSMUSG00000087518.1, intron 1 of 4) antisense-intron (ENSMUSG00000087518.1, intron 1 of 4) -2067 ENSMUSG00000087422.1 ENSMUSG00000087422 ENSMUST00000131533 Gm13564 lincRNA Interval_119804 chr4 140086451 140086664 + 0 NA intron (ENSMUSG00000040972.8, intron 3 of 9) protein_coding-intron (ENSMUSG00000040972.8, intron 3 of 9) -45320 ENSMUSG00000085968.1 ENSMUSG00000085968 ENSMUST00000135858 Gm13027 antisense Interval_108665 chr3 129918328 129918912 + 0 NA exon (ENSMUSG00000027994.14, exon 5 of 8) protein_coding-exon (ENSMUSG00000027994.14, exon 5 of 8) 17119 ENSMUSG00000027997.9 ENSMUSG00000027997 ENSMUST00000152622 Casp6 protein_coding Interval_113017 chr4 46900339 46900680 + 0 NA intron (ENSMUSG00000039809.10, intron 1 of 18) protein_coding-intron (ENSMUSG00000039809.10, intron 1 of 18) -40607 ENSMUSG00000039809.10 ENSMUSG00000039809 ENSMUST00000206773 Gabbr2 protein_coding Interval_118220 chr4 129595265 129595480 + 0 NA exon (ENSMUSG00000028798.16, exon 5 of 11) protein_coding-exon (ENSMUSG00000028798.16, exon 5 of 11) 5227 ENSMUSG00000028798.16 ENSMUSG00000028798 ENSMUST00000143384 Eif3i protein_coding Interval_89927 chr2 26528412 26528741 + 0 NA Intergenic Intergenic -30049 ENSMUSG00000082864.1 ENSMUSG00000082864 ENSMUST00000121427 Gm13358 processed_pseudogene Interval_88608 chr2 6604025 6604222 + 0 NA TTS (ENSMUSG00000002107.18) protein_coding-TTS (ENSMUSG00000002107.18) 124433 ENSMUSG00000102599.1 ENSMUSG00000102599 ENSMUST00000194293 Gm38386 TEC Interval_39283 chr12 86454732 86456476 + 0 NA intron (ENSMUSG00000021255.17, intron 1 of 6) protein_coding-intron (ENSMUSG00000021255.17, intron 1 of 6) -14513 ENSMUSG00000021255.17 ENSMUSG00000021255 ENSMUST00000136464 Esrrb protein_coding Interval_931 chr1 13259225 13260506 + 0 NA intron (ENSMUSG00000005886.14, intron 1 of 3) protein_coding-intron (ENSMUSG00000005886.14, intron 2 of 22) -2333 ENSMUSG00000099183.1 ENSMUSG00000099183 ENSMUST00000183805 Gm27881 miRNA Interval_92430 chr2 59679306 59680263 + 0 NA intron (ENSMUSG00000035168.16, intron 1 of 25) protein_coding-intron (ENSMUSG00000035168.16, intron 2 of 26) -115100 ENSMUSG00000081157.1 ENSMUSG00000081157 ENSMUST00000118837 Gm13552 processed_pseudogene Interval_34299 chr12 3229755 3230259 + 0 NA promoter-TSS (ENSMUSG00000112719.1) transcribed_processed_pseudogene-promoter-TSS (ENSMUSG00000112719.1) -116 ENSMUSG00000112719.1 ENSMUSG00000112719 ENSMUST00000219904 Gm45925 transcribed_processed_pseudogene Interval_88209 chr19 60678619 60678912 + 0 NA Intergenic Intergenic 67478 ENSMUSG00000117790.1 ENSMUSG00000117790 ENSMUST00000236155 Gm46652 lincRNA Interval_49492 chr13 112416020 112417313 + 0 NA intron (ENSMUSG00000114656.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000114656.1, intron 1 of 1) 699 ENSMUSG00000114656.1 ENSMUSG00000114656 ENSMUST00000224082 2810403G07Rik lincRNA Interval_159608 chr8 95776503 95776745 + 0 NA exon (ENSMUSG00000110556.1, exon 1 of 1) TEC-exon (ENSMUSG00000110556.1, exon 1 of 1) 1906 ENSMUSG00000110556.1 ENSMUSG00000110556 ENSMUST00000212863 Gm45762 TEC Interval_83816 chr19 4847590 4848292 + 0 NA Intergenic Intergenic 8575 ENSMUSG00000067872.2 ENSMUSG00000067872 ENSMUST00000088653 Ccdc87 protein_coding Interval_40628 chr12 106101963 106102221 + 0 NA Intergenic Intergenic -3121 ENSMUSG00000113390.1 ENSMUSG00000113390 ENSMUST00000221493 Gm32635 lincRNA Interval_128535 chr5 113881070 113882769 + 0 NA exon (ENSMUSG00000004530.12, exon 2 of 2) protein_coding-exon (ENSMUSG00000004530.12, exon 2 of 2) 21758 ENSMUSG00000106623.1 ENSMUSG00000106623 ENSMUST00000198299 Gm43335 TEC Interval_66446 chr16 33891426 33893237 + 0 NA intron (ENSMUSG00000022817.15, intron 1 of 10) protein_coding-intron (ENSMUSG00000022817.15, intron 5 of 14) 390 ENSMUSG00000022817.15 ENSMUSG00000022817 ENSMUST00000231409 Itgb5 protein_coding Interval_172609 chrX 38330953 38331271 + 0 NA intron (ENSMUSG00000016327.9, intron 6 of 7) protein_coding-intron (ENSMUSG00000016327.9, intron 6 of 7) 14928 ENSMUSG00000016327.9 ENSMUSG00000016327 ENSMUST00000115134 Atp1b4 protein_coding Interval_107312 chr3 105713943 105714682 + 0 NA intron (ENSMUSG00000048458.8, intron 1 of 1) protein_coding-intron (ENSMUSG00000048458.8, intron 1 of 1) 8854 ENSMUSG00000048458.8 ENSMUSG00000048458 ENSMUST00000098273 Inka2 protein_coding Interval_143375 chr7 6220321 6220636 + 0 NA Intergenic Intergenic -9701 ENSMUSG00000058028.14 ENSMUSG00000058028 ENSMUST00000165445 Zscan5b protein_coding Interval_22323 chr11 8783975 8785121 + 0 NA Intergenic Intergenic 22300 ENSMUSG00000081539.1 ENSMUSG00000081539 ENSMUST00000121505 Gm11990 processed_pseudogene Interval_48606 chr13 100616154 100617065 + 0 NA promoter-TSS (ENSMUSG00000021636.15) protein_coding-promoter-TSS (ENSMUSG00000021636.15) 93 ENSMUSG00000021636.15 ENSMUSG00000021636 ENSMUST00000168772 Marveld2 protein_coding Interval_130284 chr5 125408117 125410180 + 0 NA Intergenic Intergenic 17584 ENSMUSG00000029480.13 ENSMUSG00000029480 ENSMUST00000198746 Dhx37 protein_coding Interval_136534 chr6 55239657 55240177 + 0 NA intron (ENSMUSG00000038022.11, intron 5 of 10) protein_coding-intron (ENSMUSG00000038022.11, intron 5 of 17) 36534 ENSMUSG00000038022.11 ENSMUSG00000038022 ENSMUST00000203225 Mindy4 protein_coding Interval_92953 chr2 68925554 68927577 + 0 NA intron (ENSMUSG00000027035.10, intron 1 of 10) protein_coding-intron (ENSMUSG00000027035.10, intron 1 of 9) 20562 ENSMUSG00000103747.1 ENSMUSG00000103747 ENSMUST00000192661 Gm38236 TEC Interval_153077 chr7 141215102 141216572 + 0 NA promoter-TSS (ENSMUSG00000038618.12) protein_coding-promoter-TSS (ENSMUSG00000038618.12) -125 ENSMUSG00000038618.12 ENSMUSG00000038618 ENSMUST00000209760 Rassf7 protein_coding Interval_41061 chr12 110870417 110870939 + 0 NA TTS (ENSMUSG00000021271.5) protein_coding-TTS (ENSMUSG00000021271.5) -11784 ENSMUSG00000091498.4 ENSMUSG00000091498 ENSMUST00000181662 Mpc1-ps processed_pseudogene Interval_106967 chr3 102242639 102243348 + 0 NA Intergenic Intergenic -6676 ENSMUSG00000105151.1 ENSMUSG00000105151 ENSMUST00000198375 Gm43241 lincRNA Interval_75907 chr17 72917200 72919490 + 0 NA promoter-TSS (ENSMUSG00000024063.13) protein_coding-promoter-TSS (ENSMUSG00000024063.13) -2843 ENSMUSG00000024063.13 ENSMUSG00000024063 ENSMUST00000148556 Lbh protein_coding Interval_92745 chr2 65027758 65027959 + 0 NA Intergenic Intergenic -52089 ENSMUSG00000026888.14 ENSMUSG00000026888 ENSMUST00000146807 Grb14 protein_coding Interval_164310 chr9 35217474 35217744 + 0 NA TTS (ENSMUSG00000032042.11) protein_coding-TTS (ENSMUSG00000032042.11) 5715 ENSMUSG00000032042.11 ENSMUSG00000032042 ENSMUST00000132799 Srpr protein_coding Interval_48597 chr13 100577426 100578225 + 0 NA Intergenic Intergenic -17793 ENSMUSG00000114332.1 ENSMUSG00000114332 ENSMUST00000223825 Gm8847 processed_pseudogene Interval_109358 chr3 139662367 139662569 + 0 NA intron (ENSMUSG00000047940.13, intron 12 of 13) protein_coding-intron (ENSMUSG00000047940.13, intron 12 of 13) 13089 ENSMUSG00000106574.1 ENSMUSG00000106574 ENSMUST00000199447 Gm2451 processed_pseudogene Interval_118780 chr4 133665254 133665483 + 0 NA exon (ENSMUSG00000043257.15, exon 3 of 4) protein_coding-exon (ENSMUSG00000043257.15, exon 3 of 4) 7279 ENSMUSG00000043257.15 ENSMUSG00000043257 ENSMUST00000151837 Pigv protein_coding Interval_25896 chr11 52395275 52397881 + 0 NA promoter-TSS (ENSMUSG00000036275.13) protein_coding-promoter-TSS (ENSMUSG00000036275.13) 150 ENSMUSG00000036275.13 ENSMUSG00000036275 ENSMUST00000136303 9530068E07Rik protein_coding Interval_72979 chr17 33925026 33926722 + 0 NA promoter-TSS (ENSMUSG00000024308.15) protein_coding-promoter-TSS (ENSMUSG00000024308.15) -5018 ENSMUSG00000041354.16 ENSMUSG00000041354 ENSMUST00000174442 Rgl2 protein_coding Interval_131041 chr5 134725507 134726495 + 0 NA promoter-TSS (ENSMUSG00000029675.12) protein_coding-promoter-TSS (ENSMUSG00000029675.12) 3105 ENSMUSG00000029675.12 ENSMUSG00000029675 ENSMUST00000201399 Eln protein_coding Interval_42335 chr13 12188415 12189489 + 0 NA TTS (ENSMUSG00000021311.9) protein_coding-TTS (ENSMUSG00000021311.9) -9671 ENSMUSG00000113789.1 ENSMUSG00000113789 ENSMUST00000221565 Gm47322 TEC Interval_85027 chr19 21664837 21665281 + 0 NA intron (ENSMUSG00000047368.4, intron 1 of 3) protein_coding-intron (ENSMUSG00000047368.4, intron 1 of 3) -12449 ENSMUSG00000035171.9 ENSMUSG00000035171 ENSMUST00000178781 1110059E24Rik protein_coding Interval_172604 chrX 38189267 38190601 + 0 NA promoter-TSS (ENSMUSG00000048047.3) protein_coding-promoter-TSS (ENSMUSG00000048047.3) 100 ENSMUSG00000048047.3 ENSMUSG00000048047 ENSMUST00000131124 Zbtb33 protein_coding Interval_104006 chr3 57138234 57138504 + 0 NA Intergenic Intergenic -1538 ENSMUSG00000097366.1 ENSMUSG00000097366 ENSMUST00000181591 Gm8177 processed_pseudogene Interval_141406 chr6 128066000 128066426 + 0 NA intron (ENSMUSG00000030352.15, intron 1 of 7) protein_coding-intron (ENSMUSG00000030352.15, intron 2 of 8) 28813 ENSMUSG00000076327.1 ENSMUSG00000076327 ENSMUST00000102372 Gm26338 miRNA Interval_122402 chr5 22090431 22092071 + 0 NA intron (ENSMUSG00000042453.14, intron 3 of 4) protein_coding-intron (ENSMUSG00000042453.14, intron 10 of 63) -133265 ENSMUSG00000105766.1 ENSMUSG00000105766 ENSMUST00000198176 Gm19666 TEC Interval_46112 chr13 61813022 61813735 + 0 NA intron (ENSMUSG00000113626.1, intron 1 of 2) transcribed_processed_pseudogene-intron (ENSMUSG00000113626.1, intron 1 of 1) 9112 ENSMUSG00000113626.1 ENSMUSG00000113626 ENSMUST00000220769 Gm7240 transcribed_processed_pseudogene Interval_129227 chr5 118321592 118322511 + 0 NA Intergenic Intergenic 55602 ENSMUSG00000095477.1 ENSMUSG00000095477 ENSMUST00000104098 Gm25076 snoRNA Interval_83634 chr19 3354999 3355430 + 0 NA intron (ENSMUSG00000024900.5, intron 3 of 6) protein_coding-intron (ENSMUSG00000024900.5, intron 3 of 18) -21130 ENSMUSG00000024900.5 ENSMUSG00000024900 ENSMUST00000238027 Cpt1a protein_coding Interval_145777 chr7 38221383 38222259 + 0 NA exon (ENSMUSG00000074170.5, exon 2 of 2) protein_coding-exon (ENSMUSG00000074170.5, exon 2 of 2) 6195 ENSMUSG00000074170.5 ENSMUSG00000074170 ENSMUST00000098513 Plekhf1 protein_coding Interval_15515 chr10 50483444 50484521 + 0 NA Intergenic Intergenic 2986 ENSMUSG00000112456.1 ENSMUSG00000112456 ENSMUST00000218475 Gm6991 processed_pseudogene Interval_54265 chr14 66983955 66984413 + 0 NA Intergenic Intergenic 13732 ENSMUSG00000065673.1 ENSMUSG00000065673 ENSMUST00000083739 Gm24258 snoRNA Interval_138157 chr6 85586899 85588327 + 0 NA promoter-TSS (ENSMUSG00000063810.7) protein_coding-promoter-TSS (ENSMUSG00000063810.7) -33 ENSMUSG00000063810.7 ENSMUSG00000063810 ENSMUST00000201221 Alms1 protein_coding Interval_127123 chr5 100436854 100438398 + 0 NA Intergenic Intergenic 7900 ENSMUSG00000106391.1 ENSMUSG00000106391 ENSMUST00000197921 Gm42690 TEC Interval_170460 chr9 108128109 108129027 + 0 NA intron (ENSMUSG00000032589.14, intron 2 of 11) protein_coding-intron (ENSMUSG00000032589.14, intron 2 of 11) -8760 ENSMUSG00000102224.5 ENSMUSG00000102224 ENSMUST00000195536 4930447F24Rik processed_transcript Interval_110112 chr3 153385834 153386196 + 0 NA intron (ENSMUSG00000052544.9, intron 3 of 4) protein_coding-intron (ENSMUSG00000052544.9, intron 2 of 2) 72302 ENSMUSG00000099114.1 ENSMUSG00000099114 ENSMUST00000184201 Gm27405 miRNA Interval_71462 chr17 23924505 23925662 + 0 NA intron (ENSMUSG00000117488.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000117488.1, intron 1 of 1) 414 ENSMUSG00000117488.1 ENSMUSG00000117488 ENSMUST00000234950 Gm41545 lincRNA Interval_164722 chr9 40805422 40808346 + 0 NA intron (ENSMUSG00000015656.17, intron 1 of 1) protein_coding-intron (ENSMUSG00000015656.17, intron 1 of 1) 2136 ENSMUSG00000064791.1 ENSMUSG00000064791 ENSMUST00000082857 Snord14e snoRNA Interval_120214 chr4 144330179 144330942 + 0 NA intron (ENSMUSG00000078508.1, intron 1 of 2) protein_coding-intron (ENSMUSG00000078508.1, intron 1 of 2) 311 ENSMUSG00000078508.1 ENSMUSG00000078508 ENSMUST00000105751 Gm13128 protein_coding Interval_92993 chr2 69300806 69301327 + 0 NA intron (ENSMUSG00000027048.15, intron 9 of 28) protein_coding-intron (ENSMUSG00000027048.15, intron 9 of 28) -28673 ENSMUSG00000083592.1 ENSMUSG00000083592 ENSMUST00000117306 Gm13614 processed_pseudogene Interval_111823 chr4 31549581 31549857 + 0 NA Intergenic Intergenic 169247 ENSMUSG00000082254.1 ENSMUSG00000082254 ENSMUST00000118967 Gm11922 processed_pseudogene Interval_172480 chrX 20950170 20951241 + 0 NA promoter-TSS (ENSMUSG00000009406.13) protein_coding-promoter-TSS (ENSMUSG00000009406.13) -97 ENSMUSG00000009406.13 ENSMUSG00000009406 ENSMUST00000148133 Elk1 protein_coding Interval_77086 chr17 86418075 86418746 + 0 NA intron (ENSMUSG00000045038.14, intron 2 of 14) protein_coding-intron (ENSMUSG00000045038.14, intron 3 of 15) -72152 ENSMUSG00000045038.14 ENSMUSG00000045038 ENSMUST00000136986 Prkce protein_coding Interval_84633 chr19 14546593 14546960 + 0 NA intron (ENSMUSG00000024642.17, intron 3 of 3) protein_coding-intron (ENSMUSG00000024642.17, intron 5 of 19) 48763 ENSMUSG00000024642.17 ENSMUSG00000024642 ENSMUST00000235975 Tle4 protein_coding Interval_110714 chr4 6794466 6794823 + 0 NA intron (ENSMUSG00000041272.11, intron 4 of 4) protein_coding-intron (ENSMUSG00000041272.11, intron 3 of 8) 106475 ENSMUSG00000086052.1 ENSMUSG00000086052 ENSMUST00000137749 Gm11802 antisense Interval_49809 chr13 116222421 116222690 + 0 NA Intergenic Intergenic 68774 ENSMUSG00000061669.6 ENSMUSG00000061669 ENSMUST00000081679 Rpl34-ps2 processed_pseudogene Interval_44530 chr13 45786107 45786973 + 0 NA intron (ENSMUSG00000046876.16, intron 4 of 7) protein_coding-intron (ENSMUSG00000046876.16, intron 4 of 7) 36968 ENSMUSG00000114131.1 ENSMUSG00000114131 ENSMUST00000221126 Gm47460 antisense Interval_171766 chr9 120893132 120894282 + 0 NA Intergenic Intergenic -11735 ENSMUSG00000111528.1 ENSMUSG00000111528 ENSMUST00000215728 Gm39460 lincRNA Interval_105158 chr3 82995086 82995695 + 0 NA intron (ENSMUSG00000102595.1, intron 1 of 3) lincRNA-intron (ENSMUSG00000102595.1, intron 1 of 3) 195 ENSMUSG00000102595.1 ENSMUSG00000102595 ENSMUST00000194580 Gm30097 lincRNA Interval_13193 chr10 12940830 12941896 + 0 NA TTS (ENSMUSG00000039232.12) protein_coding-TTS (ENSMUSG00000039232.12) -18273 ENSMUSG00000097378.8 ENSMUSG00000097378 ENSMUST00000180529 B230208H11Rik lincRNA Interval_158054 chr8 78419588 78420871 + 0 NA Intergenic Intergenic 16416 ENSMUSG00000031688.4 ENSMUSG00000031688 ENSMUST00000034115 Pou4f2 protein_coding Interval_72951 chr17 33780859 33782285 + 0 NA promoter-TSS (ENSMUSG00000002289.16) protein_coding-promoter-TSS (ENSMUSG00000002289.16) -2429 ENSMUSG00000002289.16 ENSMUSG00000002289 ENSMUST00000174872 Angptl4 protein_coding Interval_165004 chr9 43807591 43808838 + 0 NA TTS (ENSMUSG00000032012.9) protein_coding-TTS (ENSMUSG00000032012.9) 63570 ENSMUSG00000032012.9 ENSMUSG00000032012 ENSMUST00000180221 Nectin1 protein_coding Interval_89642 chr2 23908568 23908992 + 0 NA TTS (ENSMUSG00000083373.1) processed_pseudogene-TTS (ENSMUSG00000083373.1) 339 ENSMUSG00000083373.1 ENSMUSG00000083373 ENSMUST00000117708 Gm13392 processed_pseudogene Interval_157662 chr8 72146712 72147988 + 0 NA TTS (ENSMUSG00000087502.1) processed_transcript-TTS (ENSMUSG00000087502.1) -6530 ENSMUSG00000097472.1 ENSMUSG00000097472 ENSMUST00000181918 Gm26586 antisense Interval_166851 chr9 63196197 63196490 + 0 NA intron (ENSMUSG00000058444.8, intron 20 of 21) protein_coding-intron (ENSMUSG00000058444.8, intron 20 of 21) -49332 ENSMUSG00000022245.15 ENSMUSG00000022245 ENSMUST00000055281 Skor1 protein_coding Interval_25726 chr11 51158997 51159372 + 0 NA Intergenic Intergenic 16638 ENSMUSG00000081296.1 ENSMUSG00000081296 ENSMUST00000118235 Gm12203 processed_pseudogene Interval_96173 chr2 120279775 120281311 + 0 NA intron (ENSMUSG00000070719.4, intron 6 of 19) protein_coding-intron (ENSMUSG00000070719.4, intron 6 of 19) 8654 ENSMUSG00000070719.4 ENSMUSG00000070719 ENSMUST00000094665 Pla2g4d protein_coding Interval_31383 chr11 100357679 100358220 + 0 NA Intergenic Intergenic 4177 ENSMUSG00000091478.2 ENSMUSG00000091478 ENSMUST00000081241 Gm10039 processed_pseudogene Interval_14485 chr10 34247035 34248073 + 0 NA Intergenic Intergenic -1965 ENSMUSG00000111563.1 ENSMUSG00000111563 ENSMUST00000217423 Gm47485 TEC Interval_27699 chr11 69551393 69551651 + 0 NA Intergenic Intergenic 8683 ENSMUSG00000003934.5 ENSMUSG00000003934 ENSMUST00000004036 Efnb3 protein_coding Interval_3971 chr1 65178084 65179491 + 0 NA intron (ENSMUSG00000025950.16, intron 1 of 4) protein_coding-intron (ENSMUSG00000025950.16, intron 1 of 8) 7692 ENSMUSG00000025950.16 ENSMUSG00000025950 ENSMUST00000191459 Idh1 protein_coding Interval_32 GL456211.1 170025 171855 + 0 NA NA NA NA NA Interval_78256 chr18 10848846 10850094 + 0 NA Intergenic Intergenic -10210 ENSMUSG00000117593.1 ENSMUSG00000117593 ENSMUST00000235066 Gm18764 processed_pseudogene Interval_60652 chr15 75934235 75934859 + 0 NA Intergenic Intergenic -4803 ENSMUSG00000022570.7 ENSMUSG00000022570 ENSMUST00000230884 Tsta3 protein_coding Interval_172295 chrX 12559476 12559731 + 0 NA Intergenic Intergenic -28198 ENSMUSG00000031007.2 ENSMUSG00000031007 ENSMUST00000033313 Atp6ap2 protein_coding Interval_50144 chr14 8268354 8269916 + 0 NA Intergenic Intergenic -10981 ENSMUSG00000021751.13 ENSMUSG00000021751 ENSMUST00000171175 Acox2 protein_coding Interval_65128 chr16 20016300 20017397 + 0 NA Intergenic Intergenic -50529 ENSMUSG00000043008.9 ENSMUSG00000043008 ENSMUST00000165530 Klhl6 protein_coding Interval_60068 chr15 64434509 64435084 + 0 NA Intergenic Intergenic 38417 ENSMUSG00000115169.1 ENSMUSG00000115169 ENSMUST00000226656 Gm30563 lincRNA Interval_16501 chr10 63213603 63213813 + 0 NA Intergenic Intergenic 30445 ENSMUSG00000045391.4 ENSMUSG00000045391 ENSMUST00000054837 1700120B22Rik bidirectional_promoter_lncRNA Interval_163216 chr9 18385723 18386371 + 0 NA promoter-TSS (ENSMUSG00000043943.14) protein_coding-promoter-TSS (ENSMUSG00000043943.14) -14495 ENSMUSG00000110944.1 ENSMUSG00000110944 ENSMUST00000216944 Gm19174 processed_pseudogene Interval_151083 chr7 118434098 118435585 + 0 NA intron (ENSMUSG00000058420.8, intron 4 of 7) protein_coding-intron (ENSMUSG00000058420.8, intron 4 of 7) 13215 ENSMUSG00000058420.8 ENSMUSG00000058420 ENSMUST00000207650 Syt17 protein_coding Interval_30831 chr11 96759983 96760694 + 0 NA Intergenic Intergenic -6464 ENSMUSG00000085242.1 ENSMUSG00000085242 ENSMUST00000124865 Gm11537 antisense Interval_171176 chr9 114985618 114986495 + 0 NA intron (ENSMUSG00000040875.12, intron 1 of 11) protein_coding-intron (ENSMUSG00000040875.12, intron 1 of 11) -3317 ENSMUSG00000050621.7 ENSMUSG00000050621 ENSMUST00000053150 Rps27rt protein_coding Interval_49967 chr13 119034815 119035754 + 0 NA Intergenic Intergenic -176870 ENSMUSG00000114868.1 ENSMUSG00000114868 ENSMUST00000224309 Gm47335 processed_pseudogene Interval_105714 chr3 88884336 88884587 + 0 NA intron (ENSMUSG00000054199.17, intron 10 of 13) protein_coding-intron (ENSMUSG00000054199.17, intron 13 of 30) 15540 ENSMUSG00000106218.1 ENSMUSG00000106218 ENSMUST00000198251 Gm43713 antisense Interval_132092 chr5 142738717 142739287 + 0 NA intron (ENSMUSG00000039477.16, intron 16 of 24) protein_coding-intron (ENSMUSG00000039477.16, intron 16 of 24) 27020 ENSMUSG00000039477.16 ENSMUSG00000039477 ENSMUST00000198181 Tnrc18 protein_coding Interval_104685 chr3 69402230 69402569 + 0 NA intron (ENSMUSG00000027784.10, intron 1 of 3) protein_coding-intron (ENSMUSG00000027784.10, intron 1 of 3) 29969 ENSMUSG00000090743.1 ENSMUSG00000090743 ENSMUST00000165161 Gm17213 processed_pseudogene Interval_67229 chr16 44583366 44583949 + 0 NA Intergenic Intergenic -24760 ENSMUSG00000022687.12 ENSMUSG00000022687 ENSMUST00000114634 Boc protein_coding Interval_29062 chr11 80113535 80113955 + 0 NA intron (ENSMUSG00000017550.14, intron 9 of 18) protein_coding-intron (ENSMUSG00000017550.14, intron 13 of 22) 10742 ENSMUSG00000017550.14 ENSMUSG00000017550 ENSMUST00000154168 Atad5 protein_coding Interval_157959 chr8 77330991 77331905 + 0 NA promoter-TSS (ENSMUSG00000109732.1) antisense-promoter-TSS (ENSMUSG00000109732.1) -522 ENSMUSG00000109732.1 ENSMUSG00000109732 ENSMUST00000210418 Gm45285 antisense Interval_96747 chr2 127683394 127684507 + 0 NA Intergenic Intergenic -4455 ENSMUSG00000084006.1 ENSMUSG00000084006 ENSMUST00000118939 Gm14245 processed_pseudogene Interval_164543 chr9 38240359 38240893 + 0 NA Intergenic Intergenic -12148 ENSMUSG00000094778.3 ENSMUSG00000094778 ENSMUST00000093865 Olfr143 protein_coding Interval_78667 chr18 16665130 16666447 + 0 NA intron (ENSMUSG00000024304.14, intron 2 of 15) protein_coding-intron (ENSMUSG00000024304.14, intron 2 of 15) -62945 ENSMUSG00000085575.1 ENSMUSG00000085575 ENSMUST00000149095 Gm15485 antisense Interval_100300 chr2 168261875 168263304 + 0 NA exon (ENSMUSG00000074575.4, exon 2 of 2) protein_coding-exon (ENSMUSG00000074575.4, exon 2 of 2) 19147 ENSMUSG00000074575.4 ENSMUSG00000074575 ENSMUST00000131749 Kcng1 protein_coding Interval_41861 chr13 3626835 3628393 + 0 NA Intergenic Intergenic -6475 ENSMUSG00000033781.7 ENSMUSG00000033781 ENSMUST00000141967 Asb13 protein_coding Interval_123302 chr5 31219988 31221788 + 0 NA promoter-TSS (ENSMUSG00000029147.11) protein_coding-promoter-TSS (ENSMUSG00000029147.11) -6573 ENSMUSG00000106717.1 ENSMUSG00000106717 ENSMUST00000200853 Gm42798 TEC Interval_169032 chr9 90538219 90538666 + 0 NA Intergenic Intergenic 186447 ENSMUSG00000065881.1 ENSMUSG00000065881 ENSMUST00000083947 Gm22866 snRNA Interval_153945 chr8 11421046 11421887 + 0 NA TTS (ENSMUSG00000031503.13) protein_coding-TTS (ENSMUSG00000031503.13) -3574 ENSMUSG00000084783.1 ENSMUSG00000084783 ENSMUST00000148654 Gm15419 antisense Interval_62266 chr15 89314500 89316315 + 0 NA promoter-TSS (ENSMUSG00000036529.17) protein_coding-promoter-TSS (ENSMUSG00000036529.17) -7313 ENSMUSG00000054136.6 ENSMUSG00000054136 ENSMUST00000066991 Adm2 protein_coding Interval_114805 chr4 85402752 85403214 + 0 NA intron (ENSMUSG00000028488.15, intron 7 of 7) protein_coding-intron (ENSMUSG00000028488.15, intron 7 of 7) 26642 ENSMUSG00000028488.15 ENSMUSG00000028488 ENSMUST00000133109 Sh3gl2 protein_coding Interval_98797 chr2 155063682 155063977 + 0 NA exon (ENSMUSG00000027597.15, exon 8 of 10) protein_coding-exon (ENSMUSG00000027597.15, exon 8 of 10) 10618 ENSMUSG00000027597.15 ENSMUSG00000027597 ENSMUST00000146367 Ahcy protein_coding Interval_70113 chr17 5416433 5416845 + 0 NA TTS (ENSMUSG00000101959.1) protein_coding-TTS (ENSMUSG00000101959.1) 2128 ENSMUSG00000101959.1 ENSMUSG00000101959 ENSMUST00000189788 Ldhal6b protein_coding Interval_30064 chr11 88961799 88965840 + 0 NA TTS (ENSMUSG00000057534.13) protein_coding-TTS (ENSMUSG00000057534.13) 3112 ENSMUSG00000057534.13 ENSMUSG00000057534 ENSMUST00000082339 Elobl protein_coding Interval_147564 chr7 68296047 68296818 + 0 NA intron (ENSMUSG00000074071.11, intron 1 of 4) protein_coding-intron (ENSMUSG00000074071.11, intron 1 of 8) 20437 ENSMUSG00000074071.11 ENSMUSG00000074071 ENSMUST00000153458 Fam169b protein_coding Interval_152040 chr7 128499775 128500415 + 0 NA promoter-TSS (ENSMUSG00000108626.1) lincRNA-promoter-TSS (ENSMUSG00000108626.1) 92 ENSMUSG00000108626.1 ENSMUSG00000108626 ENSMUST00000205319 Gm40457 lincRNA Interval_142538 chr6 143148562 143149179 + 0 NA intron (ENSMUSG00000108094.1, intron 3 of 8) lincRNA-intron (ENSMUSG00000108094.1, intron 3 of 8) 5061 ENSMUSG00000108094.1 ENSMUSG00000108094 ENSMUST00000204101 Gm31108 lincRNA Interval_133324 chr5 151722623 151723012 + 0 NA Intergenic Intergenic -20349 ENSMUSG00000092806.2 ENSMUSG00000092806 ENSMUST00000175065 Gm26463 miRNA Interval_138486 chr6 88581916 88582110 + 0 NA intron (ENSMUSG00000033182.12, intron 4 of 4) protein_coding-intron (ENSMUSG00000033182.12, intron 5 of 5) 36509 ENSMUSG00000033182.12 ENSMUSG00000033182 ENSMUST00000184664 Kbtbd12 protein_coding Interval_130602 chr5 129142835 129144148 + 0 NA intron (ENSMUSG00000044017.16, intron 12 of 24) protein_coding-intron (ENSMUSG00000044017.16, intron 13 of 25) -14974 ENSMUSG00000060419.8 ENSMUSG00000060419 ENSMUST00000140155 Rps16-ps2 processed_pseudogene Interval_27281 chr11 65215410 65215662 + 0 NA intron (ENSMUSG00000020542.18, intron 5 of 13) protein_coding-intron (ENSMUSG00000020542.18, intron 1 of 9) -33379 ENSMUSG00000020542.18 ENSMUSG00000020542 ENSMUST00000150823 Myocd protein_coding Interval_58014 chr15 26112379 26112674 + 0 NA Intergenic Intergenic -50088 ENSMUSG00000115335.1 ENSMUSG00000115335 ENSMUST00000227975 Gm41279 lincRNA Interval_73629 chr17 41692730 41693331 + 0 NA Intergenic Intergenic -29342 ENSMUSG00000117001.1 ENSMUSG00000117001 ENSMUST00000232972 Gm49858 processed_pseudogene Interval_141965 chr6 136121770 136122529 + 0 NA intron (ENSMUSG00000030209.14, intron 1 of 1) protein_coding-intron (ENSMUSG00000030209.14, intron 2 of 13) -50912 ENSMUSG00000097496.1 ENSMUSG00000097496 ENSMUST00000181537 Gm26653 antisense Interval_79213 chr18 25715339 25715789 + 0 NA intron (ENSMUSG00000114511.1, intron 1 of 1) protein_coding-intron (ENSMUSG00000024268.16, intron 1 of 12) 1794 ENSMUSG00000114511.1 ENSMUSG00000114511 ENSMUST00000224766 0710001A04Rik antisense Interval_107721 chr3 111918886 111919251 + 0 NA intron (ENSMUSG00000104543.1, intron 1 of 3) lincRNA-intron (ENSMUSG00000104543.1, intron 1 of 3) 37165 ENSMUSG00000104543.1 ENSMUSG00000104543 ENSMUST00000198910 Gm6602 lincRNA Interval_53197 chr14 55064739 55066320 + 0 NA TTS (ENSMUSG00000040721.9) protein_coding-TTS (ENSMUSG00000040721.9) 10036 ENSMUSG00000100162.2 ENSMUSG00000100162 ENSMUST00000185121 Gm20687 antisense Interval_13942 chr10 24869678 24870393 + 0 NA promoter-TSS (ENSMUSG00000019984.16) protein_coding-promoter-TSS (ENSMUSG00000019984.16) -2 ENSMUSG00000019984.16 ENSMUSG00000019984 ENSMUST00000175786 Med23 protein_coding Interval_68351 chr16 73884010 73884567 + 0 NA Intergenic Intergenic 77572 ENSMUSG00000052516.19 ENSMUSG00000052516 ENSMUST00000156010 Robo2 protein_coding Interval_24220 chr11 31614636 31616117 + 0 NA Intergenic Intergenic 56351 ENSMUSG00000044502.16 ENSMUSG00000044502 ENSMUST00000109415 Bod1 protein_coding Interval_148528 chr7 82121874 82122088 + 0 NA intron (ENSMUSG00000108868.1, intron 2 of 3) lincRNA-intron (ENSMUSG00000108868.1, intron 1 of 1) -1549 ENSMUSG00000108987.1 ENSMUSG00000108987 ENSMUST00000208140 Gm45056 lincRNA Interval_58337 chr15 32586624 32587101 + 0 NA intron (ENSMUSG00000022231.10, intron 11 of 12) protein_coding-intron (ENSMUSG00000022231.10, intron 11 of 22) 36643 ENSMUSG00000115063.1 ENSMUSG00000115063 ENSMUST00000227807 4930465K09Rik antisense Interval_123780 chr5 35454028 35454416 + 0 NA Intergenic Intergenic 58124 ENSMUSG00000106970.1 ENSMUSG00000106970 ENSMUST00000201640 Gm43377 TEC Interval_87628 chr19 53815039 53815944 + 0 NA intron (ENSMUSG00000043639.15, intron 2 of 13) protein_coding-intron (ENSMUSG00000043639.15, intron 2 of 13) 9637 ENSMUSG00000089679.1 ENSMUSG00000089679 ENSMUST00000162724 Gm16299 antisense Interval_105817 chr3 89484842 89485653 + 0 NA Intergenic Intergenic 30706 ENSMUSG00000027952.16 ENSMUSG00000027952 ENSMUST00000184515 Pmvk protein_coding Interval_41685 chr12 117736605 117737277 + 0 NA intron (ENSMUSG00000041992.9, intron 10 of 15) protein_coding-intron (ENSMUSG00000041992.9, intron 22 of 27) 12969 ENSMUSG00000113840.1 ENSMUSG00000113840 ENSMUST00000223173 Gm18955 processed_pseudogene Interval_6331 chr1 105993721 105994095 + 0 NA intron (ENSMUSG00000038866.15, intron 1 of 12) protein_coding-intron (ENSMUSG00000038866.15, intron 1 of 13) -3656 ENSMUSG00000099843.1 ENSMUSG00000099843 ENSMUST00000188519 Gm7160 lincRNA Interval_143855 chr7 16771343 16772987 + 0 NA Intergenic Intergenic -10233 ENSMUSG00000001918.17 ENSMUSG00000001918 ENSMUST00000141349 Slc1a5 protein_coding Interval_23977 chr11 29135853 29136449 + 0 NA TTS (ENSMUSG00000020464.15) protein_coding-TTS (ENSMUSG00000020464.15) 5407 ENSMUSG00000020464.15 ENSMUSG00000020464 ENSMUST00000131527 Pnpt1 protein_coding Interval_87164 chr19 46547027 46549421 + 0 NA intron (ENSMUSG00000025035.9, intron 2 of 3) protein_coding-intron (ENSMUSG00000025035.9, intron 3 of 5) 10168 ENSMUSG00000025035.9 ENSMUSG00000025035 ENSMUST00000235489 Arl3 protein_coding Interval_149546 chr7 99481365 99481572 + 0 NA exon (ENSMUSG00000030744.13, exon 4 of 4) protein_coding-exon (ENSMUSG00000030744.13, exon 4 of 4) 1464 ENSMUSG00000065822.1 ENSMUSG00000065822 ENSMUST00000083888 Snord15a snoRNA Interval_169684 chr9 100371379 100371843 + 0 NA Intergenic Intergenic 20240 ENSMUSG00000111258.1 ENSMUSG00000111258 ENSMUST00000213192 Gm34397 lincRNA Interval_44099 chr13 40886190 40888076 + 0 NA promoter-TSS (ENSMUSG00000021360.16) protein_coding-promoter-TSS (ENSMUSG00000021360.16) -12944 ENSMUSG00000114672.1 ENSMUSG00000114672 ENSMUST00000225988 Gm48192 TEC Interval_158741 chr8 85700165 85701403 + 0 NA promoter-TSS (ENSMUSG00000098388.1) miRNA-promoter-TSS (ENSMUSG00000098388.1) -121 ENSMUSG00000098388.1 ENSMUSG00000098388 ENSMUST00000184375 Mir8109 miRNA Interval_35195 chr12 17946969 17947224 + 0 NA intron (ENSMUSG00000113642.1, intron 1 of 1) transcribed_unprocessed_pseudogene-intron (ENSMUSG00000113642.1, intron 1 of 1) 13932 ENSMUSG00000113536.1 ENSMUSG00000113536 ENSMUST00000221062 Gm49327 transcribed_unprocessed_pseudogene Interval_151350 chr7 121391178 121393263 + 0 NA promoter-TSS (ENSMUSG00000046321.8) protein_coding-promoter-TSS (ENSMUSG00000046321.8) 361 ENSMUSG00000046321.8 ENSMUSG00000046321 ENSMUST00000084628 Hs3st2 protein_coding Interval_26115 chr11 54416314 54416618 + 0 NA intron (ENSMUSG00000020332.7, intron 11 of 12) protein_coding-intron (ENSMUSG00000020332.7, intron 12 of 13) 12326 ENSMUSG00000084212.1 ENSMUSG00000084212 ENSMUST00000117995 Gm12225 processed_pseudogene Interval_148648 chr7 83813813 83814420 + 0 NA promoter-TSS (ENSMUSG00000109450.1) lincRNA-promoter-TSS (ENSMUSG00000109450.1) -591 ENSMUSG00000109450.1 ENSMUSG00000109450 ENSMUST00000207602 Gm39043 lincRNA Interval_111465 chr4 21840332 21840879 + 0 NA Intergenic Intergenic -7443 ENSMUSG00000028248.15 ENSMUSG00000028248 ENSMUST00000133241 Pnisr protein_coding Interval_132727 chr5 147418210 147418915 + 0 NA promoter-TSS (ENSMUSG00000106820.1) lincRNA-promoter-TSS (ENSMUSG00000106820.1) -39 ENSMUSG00000106820.1 ENSMUSG00000106820 ENSMUST00000201128 D5Ertd605e lincRNA Interval_65992 chr16 30767979 30769518 + 0 NA Intergenic Intergenic 24507 ENSMUSG00000116570.1 ENSMUSG00000116570 ENSMUST00000231445 Gm49754 lincRNA Interval_88684 chr2 9736924 9737400 + 0 NA Intergenic Intergenic -105821 ENSMUSG00000104276.1 ENSMUSG00000104276 ENSMUST00000191950 Gm37866 TEC Interval_41454 chr12 114287069 114288110 + 0 NA TTS (ENSMUSG00000076672.7) IG_V_gene-TTS (ENSMUSG00000076672.7) 993 ENSMUSG00000076672.7 ENSMUSG00000076672 ENSMUST00000103481 Ighv3-6 IG_V_gene Interval_57335 chr15 8882816 8883081 + 0 NA Intergenic Intergenic -31536 ENSMUSG00000107028.1 ENSMUSG00000107028 ENSMUST00000202103 Gm5043 processed_pseudogene Interval_10938 chr1 177321626 177323275 + 0 NA Intergenic Intergenic 53098 ENSMUSG00000103633.1 ENSMUSG00000103633 ENSMUST00000195582 Gm38328 processed_pseudogene Interval_63357 chr15 100519600 100520540 + 0 NA TTS (ENSMUSG00000009733.9) protein_coding-TTS (ENSMUSG00000009733.9) -7826 ENSMUSG00000009733.9 ENSMUSG00000009733 ENSMUST00000231138 Tfcp2 protein_coding Interval_80848 chr18 49344887 49345462 + 0 NA Intergenic Intergenic 16919 ENSMUSG00000117724.1 ENSMUSG00000117724 ENSMUST00000235797 Gm50231 processed_pseudogene Interval_24797 chr11 38137205 38137434 + 0 NA Intergenic Intergenic -81750 ENSMUSG00000082587.1 ENSMUSG00000082587 ENSMUST00000120104 Gm12129 processed_pseudogene Interval_73384 chr17 36914037 36915586 + 0 NA Intergenic Intergenic -8981 ENSMUSG00000092239.1 ENSMUSG00000092239 ENSMUST00000174380 1700031A10Rik antisense Interval_128547 chr5 113954443 113954730 + 0 NA intron (ENSMUSG00000042121.16, intron 10 of 14) protein_coding-intron (ENSMUSG00000042121.16, intron 9 of 13) 12170 ENSMUSG00000042121.16 ENSMUSG00000042121 ENSMUST00000162322 Ssh1 protein_coding Interval_83083 chr18 81131446 81131713 + 0 NA Intergenic Intergenic 48515 ENSMUSG00000118262.1 ENSMUSG00000118262 ENSMUST00000237649 Gm50423 lincRNA Interval_139543 chr6 100881738 100883679 + 0 NA Intergenic Intergenic 30223 ENSMUSG00000052144.8 ENSMUSG00000052144 ENSMUST00000203067 Ppp4r2 protein_coding Interval_81903 chr18 65729578 65729795 + 0 NA intron (ENSMUSG00000046610.15, intron 5 of 12) protein_coding-intron (ENSMUSG00000046610.15, intron 7 of 14) -14296 ENSMUSG00000118208.1 ENSMUSG00000118208 ENSMUST00000237991 Gm50234 processed_pseudogene Interval_133825 chr6 12834747 12835805 + 0 NA Intergenic Intergenic -22121 ENSMUSG00000083620.1 ENSMUSG00000083620 ENSMUST00000121833 Gm15529 processed_pseudogene Interval_164500 chr9 37500194 37500878 + 0 NA TTS (ENSMUSG00000110993.1) TEC-TTS (ENSMUSG00000110993.1) 2767 ENSMUSG00000110993.1 ENSMUSG00000110993 ENSMUST00000214783 Gm47963 TEC Interval_26590 chr11 59082109 59082798 + 0 NA exon (ENSMUSG00000061462.18, exon 23 of 90) protein_coding-exon (ENSMUSG00000061462.18, exon 23 of 90) 53922 ENSMUSG00000061462.18 ENSMUSG00000061462 ENSMUST00000133040 Obscn protein_coding Interval_92490 chr2 60083081 60083864 + 0 NA intron (ENSMUSG00000026987.16, intron 1 of 5) protein_coding-intron (ENSMUSG00000026987.16, intron 1 of 34) 15242 ENSMUSG00000087181.3 ENSMUSG00000087181 ENSMUST00000140763 Gm13570 processed_pseudogene Interval_96863 chr2 129085071 129086306 + 0 NA intron (ENSMUSG00000027394.13, intron 3 of 3) protein_coding-intron (ENSMUSG00000027394.13, intron 5 of 6) 19703 ENSMUSG00000027394.13 ENSMUSG00000027394 ENSMUST00000144120 Ttl protein_coding Interval_12726 chr10 4509625 4510107 + 0 NA promoter-TSS (ENSMUSG00000019767.12) protein_coding-promoter-TSS (ENSMUSG00000019767.12) -23129 ENSMUSG00000019767.12 ENSMUSG00000019767 ENSMUST00000157064 Ccdc170 protein_coding Interval_142495 chr6 142867451 142868236 + 0 NA intron (ENSMUSG00000030283.7, intron 4 of 4) protein_coding-intron (ENSMUSG00000030283.7, intron 4 of 4) 53458 ENSMUSG00000072683.3 ENSMUSG00000072683 ENSMUST00000159599 Gm7457 processed_transcript Interval_85646 chr19 29305836 29306068 + 0 NA intron (ENSMUSG00000024789.13, intron 21 of 23) protein_coding-intron (ENSMUSG00000024789.13, intron 21 of 23) 19404 ENSMUSG00000050957.4 ENSMUSG00000050957 ENSMUST00000052380 Insl6 protein_coding Interval_161268 chr8 119409966 119410322 + 0 NA exon (ENSMUSG00000074064.6, exon 5 of 5) protein_coding-exon (ENSMUSG00000074064.6, exon 5 of 5) 15246 ENSMUSG00000074064.6 ENSMUSG00000074064 ENSMUST00000145121 Mlycd protein_coding Interval_58487 chr15 35161661 35161929 + 0 NA intron (ENSMUSG00000022329.15, intron 1 of 10) protein_coding-intron (ENSMUSG00000022329.15, intron 1 of 10) -39009 ENSMUSG00000115345.1 ENSMUSG00000115345 ENSMUST00000228112 Gm33497 lincRNA Interval_34395 chr12 3839589 3841028 + 0 NA intron (ENSMUSG00000020661.15, intron 2 of 22) protein_coding-intron (ENSMUSG00000020661.15, intron 2 of 22) 21936 ENSMUSG00000073242.4 ENSMUSG00000073242 ENSMUST00000144896 Dnmt3aos antisense Interval_151470 chr7 122909119 122909544 + 0 NA Intergenic Intergenic 60719 ENSMUSG00000108452.1 ENSMUSG00000108452 ENSMUST00000205998 4930413G21Rik TEC Interval_100361 chr2 168639479 168640066 + 0 NA TTS (ENSMUSG00000105496.1) miRNA-TTS (ENSMUSG00000105496.1) 987 ENSMUSG00000105496.1 ENSMUSG00000105496 ENSMUST00000200215 Mir7004 miRNA Interval_135189 chr6 37388495 37389765 + 0 NA intron (ENSMUSG00000038648.5, intron 1 of 11) protein_coding-intron (ENSMUSG00000038648.5, intron 1 of 11) -52595 ENSMUSG00000038648.5 ENSMUSG00000038648 ENSMUST00000128534 Creb3l2 protein_coding Interval_95227 chr2 105009995 105010206 + 0 NA intron (ENSMUSG00000027170.12, intron 2 of 7) protein_coding-intron (ENSMUSG00000027170.12, intron 5 of 10) -3277 ENSMUSG00000027170.12 ENSMUSG00000027170 ENSMUST00000111110 Eif3m protein_coding Interval_86942 chr19 45112652 45112928 + 0 NA Intergenic Intergenic 25739 ENSMUSG00000117848.1 ENSMUSG00000117848 ENSMUST00000237139 Gm35867 lincRNA Interval_160500 chr8 110056545 110056892 + 0 NA exon (ENSMUSG00000110507.1, exon 3 of 3) lincRNA-exon (ENSMUSG00000110507.1, exon 3 of 3) 9286 ENSMUSG00000110507.1 ENSMUSG00000110507 ENSMUST00000213014 8030455M16Rik lincRNA Interval_88577 chr2 6338024 6338356 + 0 NA intron (ENSMUSG00000039046.15, intron 2 of 6) protein_coding-intron (ENSMUSG00000039046.15, intron 2 of 14) -15110 ENSMUSG00000118578.1 ENSMUSG00000118578 ENSMUST00000238876 AL845275.1 protein_coding Interval_101369 chr2 180832486 180833026 + 0 NA intron (ENSMUSG00000086166.1, intron 3 of 3) lincRNA-intron (ENSMUSG00000086166.1, intron 3 of 3) -3725 ENSMUSG00000085428.1 ENSMUSG00000085428 ENSMUST00000139338 Gm14344 lincRNA Interval_23124 chr11 20059200 20060546 + 0 NA Intergenic Intergenic 53036 ENSMUSG00000020152.7 ENSMUSG00000020152 ENSMUST00000134779 Actr2 protein_coding Interval_129591 chr5 121180450 121181701 + 0 NA TTS (ENSMUSG00000106940.1) TEC-TTS (ENSMUSG00000106940.1) 3921 ENSMUSG00000106940.1 ENSMUSG00000106940 ENSMUST00000200872 Gm42930 TEC Interval_108577 chr3 129238580 129239714 + 0 NA Intergenic Intergenic -13619 ENSMUSG00000106078.1 ENSMUSG00000106078 ENSMUST00000199637 Gm43697 TEC Interval_41956 chr13 5480455 5481235 + 0 NA intron (ENSMUSG00000114098.1, intron 3 of 5) lincRNA-intron (ENSMUSG00000114098.1, intron 3 of 3) 25936 ENSMUSG00000114098.1 ENSMUSG00000114098 ENSMUST00000223343 Gm40660 lincRNA Interval_100620 chr2 170517093 170517678 + 0 NA TTS (ENSMUSG00000052033.13) protein_coding-TTS (ENSMUSG00000052033.13) -5458 ENSMUSG00000085495.1 ENSMUSG00000085495 ENSMUST00000126086 Gm16796 antisense Interval_11323 chr1 180956973 180958037 + 0 NA intron (ENSMUSG00000026519.16, intron 8 of 22) protein_coding-intron (ENSMUSG00000026519.16, intron 8 of 22) 644 ENSMUSG00000085563.2 ENSMUSG00000085563 ENSMUST00000128545 2210411M09Rik antisense Interval_152463 chr7 133133294 133134839 + 0 NA intron (ENSMUSG00000109816.1, intron 2 of 2) lincRNA-intron (ENSMUSG00000109816.1, intron 2 of 2) 5815 ENSMUSG00000109816.1 ENSMUSG00000109816 ENSMUST00000209850 4930483O08Rik lincRNA Interval_21973 chr11 5495060 5497133 + 0 NA promoter-TSS (ENSMUSG00000085232.3) processed_pseudogene-promoter-TSS (ENSMUSG00000085232.3) -650 ENSMUSG00000085232.3 ENSMUSG00000085232 ENSMUST00000145746 Gm11962 processed_pseudogene Interval_59840 chr15 59652985 59653287 + 0 NA exon (ENSMUSG00000032501.9, exon 2 of 2) protein_coding-exon (ENSMUSG00000032501.9, exon 2 of 2) 4483 ENSMUSG00000032501.9 ENSMUSG00000032501 ENSMUST00000118228 Trib1 protein_coding Interval_98407 chr2 152131898 152133223 + 0 NA Intergenic Intergenic -11001 ENSMUSG00000068079.5 ENSMUSG00000068079 ENSMUST00000089112 Tcf15 protein_coding Interval_155759 chr8 36983914 36984144 + 0 NA Intergenic Intergenic -9575 ENSMUSG00000074384.4 ENSMUSG00000074384 ENSMUST00000098825 AI429214 protein_coding Interval_130059 chr5 123997136 123997770 + 0 NA TTS (ENSMUSG00000000915.15) protein_coding-TTS (ENSMUSG00000000915.15) 601 ENSMUSG00000098454.1 ENSMUSG00000098454 ENSMUST00000185154 Mir7032 miRNA Interval_9549 chr1 159286808 159286997 + 0 NA intron (ENSMUSG00000040782.12, intron 5 of 7) protein_coding-intron (ENSMUSG00000040782.12, intron 10 of 19) 50917 ENSMUSG00000103186.1 ENSMUSG00000103186 ENSMUST00000193887 Gm37088 TEC Interval_105337 chr3 85080443 85081391 + 0 NA intron (ENSMUSG00000102805.5, intron 3 of 9) protein_coding-intron (ENSMUSG00000102805.5, intron 3 of 9) 71779 ENSMUSG00000104290.1 ENSMUSG00000104290 ENSMUST00000194445 Gm38041 processed_pseudogene Interval_94221 chr2 85300572 85301197 + 0 NA Intergenic Intergenic -32651 ENSMUSG00000081014.1 ENSMUSG00000081014 ENSMUST00000117313 Gm13714 processed_pseudogene Interval_22365 chr11 9172719 9173154 + 0 NA Intergenic Intergenic -20515 ENSMUSG00000004668.14 ENSMUSG00000004668 ENSMUST00000151522 Abca13 protein_coding Interval_102907 chr3 32708128 32709351 + 0 NA promoter-TSS (ENSMUSG00000027671.14) protein_coding-promoter-TSS (ENSMUSG00000027671.14) 2441 ENSMUSG00000027671.14 ENSMUSG00000027671 ENSMUST00000153779 Actl6a protein_coding Interval_48340 chr13 98305432 98307660 + 0 NA intron (ENSMUSG00000096330.8, intron 3 of 3) protein_coding-intron (ENSMUSG00000096330.8, intron 6 of 6) 4042 ENSMUSG00000096330.8 ENSMUSG00000096330 ENSMUST00000186911 Gm21976 protein_coding Interval_127531 chr5 104854297 104854969 + 0 NA intron (ENSMUSG00000072774.10, intron 1 of 1) protein_coding-intron (ENSMUSG00000072774.10, intron 1 of 4) 5160 ENSMUSG00000072774.10 ENSMUSG00000072774 ENSMUST00000191135 Zfp951 protein_coding Interval_34475 chr12 4523433 4525250 + 0 NA intron (ENSMUSG00000112422.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000112422.1, intron 1 of 2) 228 ENSMUSG00000112422.1 ENSMUSG00000112422 ENSMUST00000218081 Gm31938 lincRNA Interval_48511 chr13 99579997 99580778 + 0 NA Intergenic Intergenic 18945 ENSMUSG00000114578.1 ENSMUSG00000114578 ENSMUST00000224215 Gm47158 processed_pseudogene Interval_98025 chr2 146872591 146872947 + 0 NA intron (ENSMUSG00000074749.10, intron 4 of 13) protein_coding-intron (ENSMUSG00000074749.10, intron 4 of 13) 16860 ENSMUSG00000074749.10 ENSMUSG00000074749 ENSMUST00000135595 Kiz protein_coding Interval_89285 chr2 18855394 18855590 + 0 NA intron (ENSMUSG00000026737.12, intron 3 of 4) protein_coding-intron (ENSMUSG00000026737.12, intron 6 of 9) 50782 ENSMUSG00000026737.12 ENSMUSG00000026737 ENSMUST00000152981 Pip4k2a protein_coding Interval_58582 chr15 36363008 36363320 + 0 NA intron (ENSMUSG00000115715.1, intron 1 of 2) processed_transcript-intron (ENSMUSG00000115715.1, intron 1 of 6) -11885 ENSMUSG00000115278.1 ENSMUSG00000115278 ENSMUST00000226399 Gm34150 lincRNA Interval_22183 chr11 6882825 6883787 + 0 NA Intergenic Intergenic -21002 ENSMUSG00000082333.1 ENSMUSG00000082333 ENSMUST00000118142 Gm11984 processed_pseudogene Interval_153609 chr8 3699451 3699824 + 0 NA Intergenic Intergenic -8810 ENSMUSG00000005540.10 ENSMUSG00000005540 ENSMUST00000207327 Fcer2a protein_coding Interval_66440 chr16 33866998 33868142 + 0 NA intron (ENSMUSG00000022817.15, intron 3 of 14) protein_coding-intron (ENSMUSG00000022817.15, intron 3 of 14) -24371 ENSMUSG00000022817.15 ENSMUSG00000022817 ENSMUST00000231409 Itgb5 protein_coding Interval_145415 chr7 34616220 34616758 + 0 NA Intergenic Intergenic 21223 ENSMUSG00000108723.1 ENSMUSG00000108723 ENSMUST00000206863 Gm44837 lincRNA Interval_138183 chr6 86003617 86004809 + 0 NA promoter-TSS (ENSMUSG00000106791.1) lincRNA-promoter-TSS (ENSMUSG00000106791.1) -167 ENSMUSG00000106791.1 ENSMUSG00000106791 ENSMUST00000201164 4930553P18Rik lincRNA Interval_171722 chr9 120501055 120502633 + 0 NA Intergenic Intergenic -9297 ENSMUSG00000111828.1 ENSMUSG00000111828 ENSMUST00000213677 D830035M03Rik antisense Interval_164071 chr9 31289886 31290901 + 0 NA intron (ENSMUSG00000042496.18, intron 1 of 21) protein_coding-intron (ENSMUSG00000042496.18, intron 1 of 6) -9401 ENSMUSG00000111246.1 ENSMUSG00000111246 ENSMUST00000214795 4930517E14Rik lincRNA Interval_82342 chr18 71422395 71423325 + 0 NA intron (ENSMUSG00000060534.16, intron 14 of 28) protein_coding-intron (ENSMUSG00000060534.16, intron 14 of 28) -515209 ENSMUSG00000118271.1 ENSMUSG00000118271 ENSMUST00000236972 Gm50262 processed_pseudogene Interval_20944 chr10 122573743 122573940 + 0 NA Intergenic Intergenic -3950 ENSMUSG00000112095.1 ENSMUSG00000112095 ENSMUST00000219429 A130077B15Rik lincRNA Interval_171741 chr9 120656751 120657107 + 0 NA Intergenic Intergenic -17476 ENSMUSG00000111533.1 ENSMUSG00000111533 ENSMUST00000214671 Gm39458 processed_transcript Interval_59681 chr15 57917647 57918214 + 0 NA intron (ENSMUSG00000022364.14, intron 2 of 13) protein_coding-intron (ENSMUSG00000022364.14, intron 2 of 20) 1917 ENSMUSG00000022364.14 ENSMUSG00000022364 ENSMUST00000161329 Tbc1d31 protein_coding Interval_152341 chr7 132034651 132035472 + 0 NA intron (ENSMUSG00000030862.13, intron 2 of 2) protein_coding-intron (ENSMUSG00000030849.18, intron 2 of 6) 14057 ENSMUSG00000030862.13 ENSMUSG00000030862 ENSMUST00000136188 Cpxm2 protein_coding Interval_30741 chr11 96218166 96218360 + 0 NA Intergenic Intergenic -17952 ENSMUSG00000099133.1 ENSMUSG00000099133 ENSMUST00000184648 Gm27605 misc_RNA Interval_141978 chr6 136302512 136302978 + 0 NA Intergenic Intergenic 21518 ENSMUSG00000087878.1 ENSMUSG00000087878 ENSMUST00000157253 Gm26105 snRNA Interval_112401 chr4 41050817 41052441 + 0 NA Intergenic Intergenic 1409 ENSMUSG00000088154.1 ENSMUSG00000088154 ENSMUST00000157529 Gm25637 snRNA Interval_109891 chr3 149594431 149595524 + 0 NA intron (ENSMUSG00000104785.1, intron 2 of 5) lincRNA-intron (ENSMUSG00000104785.1, intron 2 of 5) 65419 ENSMUSG00000104785.1 ENSMUSG00000104785 ENSMUST00000197948 Gm31121 lincRNA Interval_81281 chr18 57363036 57363536 + 0 NA exon (ENSMUSG00000024594.9, exon 3 of 9) protein_coding-exon (ENSMUSG00000024594.9, exon 3 of 9) 8396 ENSMUSG00000024594.9 ENSMUSG00000024594 ENSMUST00000236709 Prrc1 protein_coding Interval_8794 chr1 151213161 151213448 + 0 NA Intergenic Intergenic 3173 ENSMUSG00000114591.1 ENSMUSG00000114591 ENSMUST00000224757 Gm47996 protein_coding Interval_8872 chr1 151692825 151693783 + 0 NA intron (ENSMUSG00000026483.13, intron 6 of 13) protein_coding-intron (ENSMUSG00000026483.13, intron 2 of 9) 61714 ENSMUSG00000100594.1 ENSMUSG00000100594 ENSMUST00000186444 2810414N06Rik lincRNA Interval_41945 chr13 5049633 5049847 + 0 NA Intergenic Intergenic -106688 ENSMUSG00000113866.1 ENSMUSG00000113866 ENSMUST00000222131 Gm47450 lincRNA Interval_33612 chr11 117496532 117497394 + 0 NA Intergenic Intergenic 12595 ENSMUSG00000069588.3 ENSMUSG00000069588 ENSMUST00000092394 Gm11733 protein_coding Interval_44203 chr13 42051211 42053191 + 0 NA promoter-TSS (ENSMUSG00000021366.8) protein_coding-promoter-TSS (ENSMUSG00000021366.8) 2867 ENSMUSG00000100071.1 ENSMUSG00000100071 ENSMUST00000186134 Gm28707 lincRNA Interval_142773 chr6 145543976 145544884 + 0 NA intron (ENSMUSG00000054966.13, intron 1 of 10) protein_coding-intron (ENSMUSG00000054966.13, intron 1 of 1) -71327 ENSMUSG00000067338.6 ENSMUSG00000067338 ENSMUST00000087445 Tuba3b protein_coding Interval_33716 chr11 118049372 118050489 + 0 NA exon (ENSMUSG00000033987.16, exon 62 of 81) protein_coding-exon (ENSMUSG00000033987.16, exon 62 of 81) 37587 ENSMUSG00000017715.11 ENSMUSG00000017715 ENSMUST00000155507 Pgs1 protein_coding Interval_89931 chr2 26569830 26570715 + 0 NA Intergenic Intergenic 11647 ENSMUSG00000082864.1 ENSMUSG00000082864 ENSMUST00000121427 Gm13358 processed_pseudogene Interval_80264 chr18 38612052 38612243 + 0 NA intron (ENSMUSG00000118257.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000118257.1, intron 1 of 3) -10732 ENSMUSG00000024427.7 ENSMUSG00000024427 ENSMUST00000025295 Spry4 protein_coding Interval_66022 chr16 31003600 31004598 + 0 NA intron (ENSMUSG00000047434.14, intron 3 of 3) protein_coding-intron (ENSMUSG00000047434.14, intron 3 of 3) -30581 ENSMUSG00000087605.1 ENSMUSG00000087605 ENSMUST00000123905 Gm15742 sense_intronic Interval_78754 chr18 20378880 20379079 + 0 NA intron (ENSMUSG00000061928.6, intron 1 of 14) protein_coding-intron (ENSMUSG00000061928.6, intron 1 of 14) 2250 ENSMUSG00000061928.6 ENSMUSG00000061928 ENSMUST00000076737 Dsg1b protein_coding Interval_195 JH792829.1 179243 179660 + 0 NA NA NA NA NA Interval_58221 chr15 31155134 31155671 + 0 NA Intergenic Intergenic 38936 ENSMUSG00000077468.1 ENSMUSG00000077468 ENSMUST00000104280 Gm26416 snoRNA Interval_108454 chr3 127386201 127387004 + 0 NA intron (ENSMUSG00000032826.19, intron 1 of 1) protein_coding-intron (ENSMUSG00000032826.19, intron 1 of 14) 7104 ENSMUSG00000105822.1 ENSMUSG00000105822 ENSMUST00000199858 Gm42969 TEC Interval_142828 chr6 146256459 146257395 + 0 NA intron (ENSMUSG00000030287.15, intron 36 of 55) protein_coding-intron (ENSMUSG00000030287.15, intron 37 of 56) 14053 ENSMUSG00000107801.1 ENSMUSG00000107801 ENSMUST00000203251 Gm44086 TEC Interval_62969 chr15 98340458 98340646 + 0 NA exon (ENSMUSG00000051793.4, exon 1 of 1) protein_coding-exon (ENSMUSG00000051793.4, exon 1 of 1) 435 ENSMUSG00000051793.4 ENSMUSG00000051793 ENSMUST00000206647 Olfr284 protein_coding Interval_128326 chr5 112564647 112565369 + 0 NA intron (ENSMUSG00000058153.15, intron 1 of 14) protein_coding-intron (ENSMUSG00000058153.15, intron 1 of 16) 11860 ENSMUSG00000058153.15 ENSMUSG00000058153 ENSMUST00000212758 Sez6l protein_coding Interval_14522 chr10 34806147 34806452 + 0 NA Intergenic Intergenic -75109 ENSMUSG00000111042.1 ENSMUSG00000111042 ENSMUST00000215855 Gm18252 transcribed_processed_pseudogene Interval_131689 chr5 139306067 139306986 + 0 NA promoter-TSS (ENSMUSG00000056413.16) protein_coding-promoter-TSS (ENSMUSG00000056413.16) -3376 ENSMUSG00000056413.16 ENSMUSG00000056413 ENSMUST00000156815 Adap1 protein_coding Interval_120377 chr4 148198987 148199263 + 0 NA Intergenic Intergenic 38504 ENSMUSG00000041556.8 ENSMUSG00000041556 ENSMUST00000047951 Fbxo2 protein_coding Interval_7955 chr1 134829535 134829804 + 0 NA intron (ENSMUSG00000073557.12, intron 18 of 24) protein_coding-intron (ENSMUSG00000073557.12, intron 18 of 23) -2120 ENSMUSG00000103976.1 ENSMUSG00000103976 ENSMUST00000194520 Gm37677 TEC Interval_67497 chr16 49926802 49927327 + 0 NA Intergenic Intergenic 71419 ENSMUSG00000055447.19 ENSMUSG00000055447 ENSMUST00000229104 Cd47 protein_coding Interval_80842 chr18 48758382 48758788 + 0 NA Intergenic Intergenic 94861 ENSMUSG00000117885.1 ENSMUSG00000117885 ENSMUST00000235212 Gm50229 lincRNA Interval_25962 chr11 53186539 53186935 + 0 NA exon (ENSMUSG00000036264.9, exon 16 of 16) protein_coding-exon (ENSMUSG00000036264.9, exon 16 of 16) -13947 ENSMUSG00000058073.4 ENSMUSG00000058073 ENSMUST00000117979 Gm11189 processed_pseudogene Interval_73987 chr17 45872790 45873790 + 0 NA Intergenic Intergenic 8162 ENSMUSG00000117085.1 ENSMUSG00000117085 ENSMUST00000233801 4930542M03Rik lincRNA Interval_100561 chr2 170133423 170133657 + 0 NA intron (ENSMUSG00000052056.14, intron 1 of 2) protein_coding-intron (ENSMUSG00000052056.14, intron 1 of 6) 14563 ENSMUSG00000052056.14 ENSMUSG00000052056 ENSMUST00000149318 Zfp217 protein_coding Interval_24283 chr11 32102785 32103499 + 0 NA Intergenic Intergenic -1914 ENSMUSG00000086386.1 ENSMUSG00000086386 ENSMUST00000145338 Gm12108 lincRNA Interval_75974 chr17 74008465 74008688 + 0 NA Intergenic Intergenic 7716 ENSMUSG00000088060.1 ENSMUSG00000088060 ENSMUST00000157435 Gm24475 snoRNA Interval_699 chr1 10007171 10007895 + 0 NA intron (ENSMUSG00000025916.10, intron 1 of 4) protein_coding-intron (ENSMUSG00000025916.10, intron 1 of 8) 1597 ENSMUSG00000025916.10 ENSMUSG00000025916 ENSMUST00000155163 Ppp1r42 protein_coding Interval_167870 chr9 73181140 73181360 + 0 NA Intergenic Intergenic -5509 ENSMUSG00000066478.3 ENSMUSG00000066478 ENSMUST00000183748 Gm5745 processed_pseudogene Interval_124564 chr5 50953444 50953826 + 0 NA Intergenic Intergenic 32293 ENSMUSG00000105273.1 ENSMUSG00000105273 ENSMUST00000199087 Gm43015 processed_pseudogene Interval_24983 chr11 42485035 42485247 + 0 NA intron (ENSMUSG00000007653.12, intron 3 of 9) protein_coding-intron (ENSMUSG00000007653.12, intron 4 of 9) 63791 ENSMUSG00000007653.12 ENSMUSG00000007653 ENSMUST00000192403 Gabrb2 protein_coding Interval_164531 chr9 37842159 37842495 + 0 NA Intergenic Intergenic -11942 ENSMUSG00000066749.3 ENSMUSG00000066749 ENSMUST00000086063 Olfr877 protein_coding Interval_53796 chr14 61875326 61875622 + 0 NA Intergenic Intergenic -45902 ENSMUSG00000114706.1 ENSMUSG00000114706 ENSMUST00000224682 Gm47952 processed_pseudogene Interval_136135 chr6 51417757 51418501 + 0 NA Intergenic Intergenic -14620 ENSMUSG00000029832.16 ENSMUSG00000029832 ENSMUST00000160133 Nfe2l3 protein_coding Interval_68369 chr16 74752977 74753329 + 0 NA Intergenic Intergenic 122785 ENSMUSG00000116881.1 ENSMUSG00000116881 ENSMUST00000232678 Gm49674 TEC Interval_51278 chr14 25701737 25702521 + 0 NA promoter-TSS (ENSMUSG00000114922.1) antisense-promoter-TSS (ENSMUSG00000114922.1) -847 ENSMUSG00000114922.1 ENSMUSG00000114922 ENSMUST00000224137 Ppifos antisense Interval_172102 chrX 7573183 7575122 + 0 NA promoter-TSS (ENSMUSG00000039556.16) protein_coding-promoter-TSS (ENSMUSG00000039556.16) 131 ENSMUSG00000039556.16 ENSMUSG00000039556 ENSMUST00000123090 Ppp1r3f protein_coding Interval_129223 chr5 118293880 118295699 + 0 NA Intergenic Intergenic 28340 ENSMUSG00000095477.1 ENSMUSG00000095477 ENSMUST00000104098 Gm25076 snoRNA Interval_108217 chr3 122519320 122519558 + 0 NA intron (ENSMUSG00000028121.8, intron 3 of 3) protein_coding-intron (ENSMUSG00000028121.8, intron 8 of 11) 22242 ENSMUSG00000104773.1 ENSMUSG00000104773 ENSMUST00000196051 Mir7657 miRNA Interval_105837 chr3 89623118 89623844 + 0 NA intron (ENSMUSG00000000794.9, intron 3 of 7) protein_coding-intron (ENSMUSG00000000794.9, intron 3 of 7) -39037 ENSMUSG00000000794.9 ENSMUSG00000000794 ENSMUST00000124584 Kcnn3 protein_coding Interval_53487 chr14 57803905 57804718 + 0 NA exon (ENSMUSG00000021963.17, exon 4 of 4) protein_coding-exon (ENSMUSG00000021963.17, exon 4 of 4) 5885 ENSMUSG00000021963.17 ENSMUSG00000021963 ENSMUST00000111267 Sap18 protein_coding Interval_174005 chrX 129048161 129048641 + 0 NA Intergenic Intergenic -15896 ENSMUSG00000086244.1 ENSMUSG00000086244 ENSMUST00000122848 4930558G05Rik lincRNA Interval_32413 chr11 107405768 107406418 + 0 NA intron (ENSMUSG00000040430.18, intron 1 of 9) protein_coding-intron (ENSMUSG00000040430.18, intron 1 of 9) -4297 ENSMUSG00000085245.1 ENSMUSG00000085245 ENSMUST00000139941 Gm11713 antisense Interval_166693 chr9 61982808 61983756 + 0 NA intron (ENSMUSG00000032278.11, intron 2 of 7) protein_coding-intron (ENSMUSG00000032278.11, intron 2 of 7) -37312 ENSMUSG00000088743.1 ENSMUSG00000088743 ENSMUST00000158118 Gm23221 misc_RNA Interval_125268 chr5 65785225 65785543 + 0 NA TTS (ENSMUSG00000037795.14) protein_coding-TTS (ENSMUSG00000037795.14) 7370 ENSMUSG00000106682.1 ENSMUSG00000106682 ENSMUST00000200774 Gm42648 TEC Interval_324 chr1 3981775 3982833 + 0 NA intron (ENSMUSG00000102343.1, intron 2 of 2) lincRNA-intron (ENSMUSG00000102343.1, intron 2 of 2) 3911 ENSMUSG00000102343.1 ENSMUSG00000102343 ENSMUST00000192427 Gm37381 lincRNA Interval_132131 chr5 142877283 142877818 + 0 NA intron (ENSMUSG00000097559.1, intron 1 of 1) protein_coding-intron (ENSMUSG00000066640.11, intron 4 of 4) 823 ENSMUSG00000097559.1 ENSMUSG00000097559 ENSMUST00000181842 D430018E03Rik sense_intronic Interval_45820 chr13 58311491 58311749 + 0 NA intron (ENSMUSG00000060176.4, intron 1 of 2) protein_coding-intron (ENSMUSG00000060176.4, intron 11 of 16) 1529 ENSMUSG00000098258.1 ENSMUSG00000098258 ENSMUST00000183772 Mir6369 miRNA Interval_121055 chr4 152483877 152484182 + 0 NA promoter-TSS (ENSMUSG00000039577.17) protein_coding-promoter-TSS (ENSMUSG00000039577.17) 5851 ENSMUSG00000039577.17 ENSMUSG00000039577 ENSMUST00000123635 Nphp4 protein_coding Interval_79952 chr18 36205936 36206146 + 0 NA Intergenic Intergenic -75056 ENSMUSG00000043991.5 ENSMUSG00000043991 ENSMUST00000051301 Pura protein_coding Interval_169731 chr9 100754417 100754678 + 0 NA intron (ENSMUSG00000037286.15, intron 4 of 5) protein_coding-intron (ENSMUSG00000037286.15, intron 4 of 32) 51334 ENSMUSG00000104272.1 ENSMUSG00000104272 ENSMUST00000195122 Gm38297 TEC Interval_30737 chr11 96195852 96196329 + 0 NA exon (ENSMUSG00000049604.3, exon 2 of 2) protein_coding-exon (ENSMUSG00000049604.3, exon 2 of 2) 1774 ENSMUSG00000049604.3 ENSMUSG00000049604 ENSMUST00000062709 Hoxb13 protein_coding Interval_164353 chr9 35623591 35624356 + 0 NA intron (ENSMUSG00000074452.13, intron 4 of 10) protein_coding-intron (ENSMUSG00000074452.13, intron 4 of 10) -12032 ENSMUSG00000032099.3 ENSMUSG00000032099 ENSMUST00000034610 Pate4 protein_coding Interval_120573 chr4 149453789 149454972 + 0 NA promoter-TSS (ENSMUSG00000028996.9) protein_coding-promoter-TSS (ENSMUSG00000028996.9) -956 ENSMUSG00000028996.9 ENSMUSG00000028996 ENSMUST00000132103 Rbp7 protein_coding Interval_172954 chrX 57605089 57605345 + 0 NA Intergenic Intergenic 26737 ENSMUSG00000081100.1 ENSMUSG00000081100 ENSMUST00000118057 Gm14630 processed_pseudogene Interval_147784 chr7 73541443 73541969 + 0 NA promoter-TSS (ENSMUSG00000078671.11) protein_coding-promoter-TSS (ENSMUSG00000078671.11) 3693 ENSMUSG00000108563.1 ENSMUSG00000108563 ENSMUST00000206776 Gm44686 antisense Interval_72919 chr17 33484030 33484226 + 0 NA Intergenic Intergenic -15442 ENSMUSG00000117495.2 ENSMUSG00000117495 ENSMUST00000234517 Gm4125 protein_coding Interval_100125 chr2 167203958 167204966 + 0 NA intron (ENSMUSG00000017969.13, intron 9 of 9) protein_coding-intron (ENSMUSG00000017969.13, intron 9 of 9) 2886 ENSMUSG00000086098.1 ENSMUSG00000086098 ENSMUST00000143645 Gm14291 antisense Interval_121107 chr4 153097519 153097976 + 0 NA Intergenic Intergenic 49196 ENSMUSG00000085648.1 ENSMUSG00000085648 ENSMUST00000151703 Gm13173 lincRNA Interval_77550 chr17 91390048 91390346 + 0 NA Intergenic Intergenic -42625 ENSMUSG00000117471.1 ENSMUSG00000117471 ENSMUST00000233999 Gm49988 processed_pseudogene Interval_161047 chr8 117135570 117138001 + 0 NA Intergenic Intergenic 11450 ENSMUSG00000093446.1 ENSMUSG00000093446 ENSMUST00000176943 Gm20694 processed_pseudogene Interval_29224 chr11 81685221 81685576 + 0 NA intron (ENSMUSG00000020704.13, intron 1 of 9) protein_coding-intron (ENSMUSG00000020704.13, intron 1 of 9) 98037 ENSMUSG00000087534.1 ENSMUSG00000087534 ENSMUST00000156193 Gm11418 antisense Interval_174410 chrX 151800755 151801443 + 0 NA promoter-TSS (ENSMUSG00000025261.18) protein_coding-promoter-TSS (ENSMUSG00000025261.18) 17577 ENSMUSG00000083719.1 ENSMUSG00000083719 ENSMUST00000117340 Gm15161 processed_pseudogene Interval_148882 chr7 89796583 89796800 + 0 NA exon (ENSMUSG00000030621.17, exon 5 of 14) protein_coding-exon (ENSMUSG00000030621.17, exon 5 of 14) -30527 ENSMUSG00000109150.1 ENSMUSG00000109150 ENSMUST00000207900 Gm45793 TEC Interval_4541 chr1 74884344 74886084 + 0 NA promoter-TSS (ENSMUSG00000055197.4) protein_coding-promoter-TSS (ENSMUSG00000055197.4) -606 ENSMUSG00000055197.4 ENSMUSG00000055197 ENSMUST00000162938 Fev protein_coding Interval_15716 chr10 54548542 54549171 + 0 NA Intergenic Intergenic 122848 ENSMUSG00000112882.1 ENSMUSG00000112882 ENSMUST00000218122 Gm47970 processed_pseudogene Interval_34676 chr12 8555024 8556184 + 0 NA intron (ENSMUSG00000020600.13, intron 1 of 6) protein_coding-intron (ENSMUSG00000020600.13, intron 1 of 6) -16059 ENSMUSG00000020600.13 ENSMUSG00000020600 ENSMUST00000129465 Slc7a15 protein_coding Interval_86129 chr19 36918375 36919690 + 0 NA exon (ENSMUSG00000047632.11, exon 2 of 2) protein_coding-exon (ENSMUSG00000047632.11, exon 2 of 2) 567 ENSMUSG00000047632.11 ENSMUSG00000047632 ENSMUST00000057337 Fgfbp3 protein_coding Interval_94503 chr2 91721389 91722396 + 0 NA TTS (ENSMUSG00000027243.8) protein_coding-TTS (ENSMUSG00000027243.8) -4473 ENSMUSG00000082457.1 ENSMUSG00000082457 ENSMUST00000122236 Gm13776 processed_pseudogene Interval_159276 chr8 92721563 92721767 + 0 NA Intergenic Intergenic -4690 ENSMUSG00000078967.5 ENSMUSG00000078967 ENSMUST00000181181 Gapdh-ps16 processed_pseudogene Interval_122403 chr5 22112368 22112774 + 0 NA intron (ENSMUSG00000042453.14, intron 8 of 24) protein_coding-intron (ENSMUSG00000042453.14, intron 8 of 63) -154585 ENSMUSG00000105766.1 ENSMUSG00000105766 ENSMUST00000198176 Gm19666 TEC Interval_145304 chr7 31558957 31559316 + 0 NA Intergenic Intergenic -12329 ENSMUSG00000099598.1 ENSMUSG00000099598 ENSMUST00000188974 Scgb2b28-ps unprocessed_pseudogene Interval_152186 chr7 130509846 130510704 + 0 NA intron (ENSMUSG00000030850.17, intron 4 of 12) protein_coding-intron (ENSMUSG00000030850.17, intron 4 of 11) 9186 ENSMUSG00000030850.17 ENSMUSG00000030850 ENSMUST00000207141 Ate1 protein_coding Interval_3114 chr1 53606522 53606731 + 0 NA intron (ENSMUSG00000096141.2, intron 19 of 65) protein_coding-intron (ENSMUSG00000096141.2, intron 19 of 65) 100158 ENSMUSG00000096141.2 ENSMUSG00000096141 ENSMUST00000189677 Dnah7a protein_coding Interval_11607 chr1 183252007 183253281 + 0 NA Intergenic Intergenic 16930 ENSMUSG00000118599.1 ENSMUSG00000118599 ENSMUST00000239174 AC122792.1 unitary_pseudogene Interval_114782 chr4 85228192 85228811 + 0 NA intron (ENSMUSG00000028488.15, intron 1 of 7) protein_coding-intron (ENSMUSG00000028488.15, intron 1 of 8) 17261 ENSMUSG00000081862.1 ENSMUSG00000081862 ENSMUST00000121508 Gm12413 processed_pseudogene Interval_141161 chr6 125344237 125345011 + 0 NA TTS (ENSMUSG00000030340.16) protein_coding-TTS (ENSMUSG00000030340.16) -13141 ENSMUSG00000030341.17 ENSMUSG00000030341 ENSMUST00000134803 Tnfrsf1a protein_coding Interval_49787 chr13 115134670 115135489 + 0 NA Intergenic Intergenic 18952 ENSMUSG00000096021.1 ENSMUSG00000096021 ENSMUST00000122677 Gm25985 snRNA Interval_89653 chr2 24048062 24048473 + 0 NA intron (ENSMUSG00000026986.14, intron 2 of 6) protein_coding-intron (ENSMUSG00000026986.14, intron 2 of 6) 812 ENSMUSG00000026986.14 ENSMUSG00000026986 ENSMUST00000114497 Hnmt protein_coding Interval_39680 chr12 92115945 92116217 + 0 NA Intergenic Intergenic 45358 ENSMUSG00000113643.1 ENSMUSG00000113643 ENSMUST00000222953 Gm40598 processed_pseudogene Interval_86795 chr19 43922849 43923198 + 0 NA intron (ENSMUSG00000118000.1, intron 2 of 2) protein_coding-intron (ENSMUSG00000025195.9, intron 1 of 15) 2550 ENSMUSG00000118000.1 ENSMUSG00000118000 ENSMUST00000235838 Gm50217 lincRNA Interval_14378 chr10 31902685 31902904 + 0 NA intron (ENSMUSG00000069670.8, intron 4 of 6) protein_coding-intron (ENSMUSG00000069670.8, intron 4 of 6) 34882 ENSMUSG00000112866.1 ENSMUSG00000112866 ENSMUST00000219333 Gm47704 TEC Interval_68153 chr16 65884689 65884943 + 0 NA Intergenic Intergenic -30145 ENSMUSG00000116631.1 ENSMUSG00000116631 ENSMUST00000232112 Gm7366 processed_pseudogene Interval_161512 chr8 120833435 120834506 + 0 NA intron (ENSMUSG00000092329.1, intron 1 of 15) protein_coding-intron (ENSMUSG00000092329.1, intron 1 of 15) -46236 ENSMUSG00000097087.1 ENSMUSG00000097087 ENSMUST00000181778 Gm26878 lincRNA Interval_17727 chr10 79766427 79767818 + 0 NA promoter-TSS (ENSMUSG00000035890.9) protein_coding-promoter-TSS (ENSMUSG00000035890.9) -212 ENSMUSG00000035890.9 ENSMUSG00000035890 ENSMUST00000219189 Rnf126 protein_coding Interval_139051 chr6 94597018 94597406 + 0 NA intron (ENSMUSG00000045100.11, intron 9 of 11) protein_coding-intron (ENSMUSG00000045100.11, intron 7 of 9) 9203 ENSMUSG00000098531.1 ENSMUSG00000098531 ENSMUST00000183891 Mir7041 miRNA Interval_128002 chr5 110194132 110194457 + 0 NA intron (ENSMUSG00000029502.14, intron 9 of 23) protein_coding-intron (ENSMUSG00000029502.14, intron 9 of 23) -12286 ENSMUSG00000104720.1 ENSMUSG00000104720 ENSMUST00000199123 Gm43138 sense_intronic Interval_40191 chr12 102431939 102432931 + 0 NA intron (ENSMUSG00000021190.14, intron 1 of 13) protein_coding-intron (ENSMUSG00000021190.14, intron 1 of 13) -14893 ENSMUSG00000113265.1 ENSMUSG00000113265 ENSMUST00000222873 Gm30198 lincRNA Interval_110014 chr3 152469284 152470123 + 0 NA intron (ENSMUSG00000039058.11, intron 6 of 6) protein_coding-intron (ENSMUSG00000039058.11, intron 13 of 13) 57049 ENSMUSG00000039058.11 ENSMUSG00000039058 ENSMUST00000198552 Ak5 protein_coding Interval_9220 chr1 155171074 155171419 + 0 NA intron (ENSMUSG00000026470.14, intron 1 of 7) protein_coding-intron (ENSMUSG00000026470.14, intron 1 of 7) -8555 ENSMUSG00000104181.1 ENSMUSG00000104181 ENSMUST00000195316 Gm8850 processed_pseudogene Interval_86139 chr19 36985522 36985939 + 0 NA intron (ENSMUSG00000040565.8, intron 13 of 15) protein_coding-intron (ENSMUSG00000040565.8, intron 19 of 37) 25545 ENSMUSG00000040565.8 ENSMUSG00000040565 ENSMUST00000236343 Btaf1 protein_coding Interval_59756 chr15 59057854 59059213 + 0 NA intron (ENSMUSG00000022353.10, intron 1 of 2) protein_coding-intron (ENSMUSG00000022353.10, intron 1 of 14) 23472 ENSMUSG00000022353.10 ENSMUSG00000022353 ENSMUST00000227797 Mtss1 protein_coding Interval_168493 chr9 82494509 82494925 + 0 NA Intergenic Intergenic -30274 ENSMUSG00000098420.1 ENSMUSG00000098420 ENSMUST00000185049 Gm27249 processed_pseudogene Interval_144616 chr7 27155046 27155772 + 0 NA intron (ENSMUSG00000078787.9, intron 2 of 9) protein_coding-intron (ENSMUSG00000078787.9, intron 1 of 8) 1695 ENSMUSG00000078787.9 ENSMUSG00000078787 ENSMUST00000108385 Cyp2t4 protein_coding Interval_172977 chrX 59466315 59466628 + 0 NA intron (ENSMUSG00000031137.17, intron 2 of 2) protein_coding-intron (ENSMUSG00000031137.17, intron 2 of 5) 101577 ENSMUSG00000031137.17 ENSMUSG00000031137 ENSMUST00000150413 Fgf13 protein_coding Interval_127350 chr5 103356083 103356336 + 0 NA exon (ENSMUSG00000104684.1, exon 1 of 1) lincRNA-exon (ENSMUSG00000104684.1, exon 1 of 1) 489 ENSMUSG00000104684.1 ENSMUSG00000104684 ENSMUST00000200007 5430427N15Rik lincRNA Interval_166784 chr9 62649030 62649965 + 0 NA Intergenic Intergenic -28363 ENSMUSG00000032243.8 ENSMUSG00000032243 ENSMUST00000159012 Itga11 protein_coding Interval_24032 chr11 29663297 29663535 + 0 NA Intergenic Intergenic -17907 ENSMUSG00000084850.1 ENSMUSG00000084850 ENSMUST00000125194 Gm12092 lincRNA Interval_10880 chr1 176602240 176602462 + 0 NA Intergenic Intergenic 40207 ENSMUSG00000103471.1 ENSMUSG00000103471 ENSMUST00000193453 Gm17966 processed_pseudogene Interval_126966 chr5 98563551 98564149 + 0 NA TTS (ENSMUSG00000067101.5) lincRNA-TTS (ENSMUSG00000067101.5) 3076 ENSMUSG00000067101.5 ENSMUSG00000067101 ENSMUST00000086912 1700010H22Rik lincRNA Interval_70458 chr17 10365449 10367157 + 0 NA Intergenic Intergenic 41701 ENSMUSG00000099384.6 ENSMUSG00000099384 ENSMUST00000188715 1700110C19Rik lincRNA Interval_141435 chr6 128275524 128275960 + 0 NA promoter-TSS (ENSMUSG00000030353.15) protein_coding-promoter-TSS (ENSMUSG00000030353.15) -18360 ENSMUSG00000095262.2 ENSMUSG00000095262 ENSMUST00000179119 Gm21893 processed_pseudogene Interval_23011 chr11 18926999 18928006 + 0 NA intron (ENSMUSG00000020160.18, intron 6 of 9) protein_coding-intron (ENSMUSG00000020160.18, intron 8 of 12) -37662 ENSMUSG00000104244.1 ENSMUSG00000104244 ENSMUST00000195805 2900018N21Rik TEC Interval_38047 chr12 75161904 75162207 + 0 NA intron (ENSMUSG00000034402.3, intron 1 of 10) protein_coding-intron (ENSMUSG00000034402.3, intron 1 of 10) 15277 ENSMUSG00000034402.3 ENSMUSG00000034402 ENSMUST00000042299 Kcnh5 protein_coding Interval_171639 chr9 119806440 119806847 + 0 NA intron (ENSMUSG00000034115.10, intron 8 of 26) protein_coding-intron (ENSMUSG00000034115.10, intron 8 of 26) 17217 ENSMUSG00000034115.10 ENSMUSG00000034115 ENSMUST00000070617 Scn11a protein_coding Interval_85421 chr19 25646778 25647215 + 0 NA Intergenic Intergenic 25226 ENSMUSG00000101089.1 ENSMUSG00000101089 ENSMUST00000186768 2610016A17Rik antisense Interval_42870 chr13 20828281 20828795 + 0 NA TTS (ENSMUSG00000114070.1) processed_pseudogene-TTS (ENSMUSG00000114070.1) 702 ENSMUSG00000114070.1 ENSMUSG00000114070 ENSMUST00000221287 Gm47727 processed_pseudogene Interval_60801 chr15 76853218 76854471 + 0 NA exon (ENSMUSG00000022526.8, exon 4 of 4) protein_coding-exon (ENSMUSG00000022526.8, exon 4 of 4) 17141 ENSMUSG00000022526.8 ENSMUSG00000022526 ENSMUST00000230524 Zfp251 protein_coding Interval_136049 chr6 50323047 50323271 + 0 NA exon (ENSMUSG00000029822.15, exon 14 of 22) protein_coding-exon (ENSMUSG00000029822.15, exon 14 of 22) 28798 ENSMUSG00000029822.15 ENSMUSG00000029822 ENSMUST00000154333 Osbpl3 protein_coding Interval_58043 chr15 27169940 27170349 + 0 NA Intergenic Intergenic -108278 ENSMUSG00000088191.1 ENSMUSG00000088191 ENSMUST00000157566 Gm23903 snoRNA Interval_142271 chr6 140298074 140298721 + 0 NA Intergenic Intergenic -1941 ENSMUSG00000107572.1 ENSMUSG00000107572 ENSMUST00000204425 Gm3961 TEC Interval_96087 chr2 119684135 119684332 + 0 NA intron (ENSMUSG00000027304.9, intron 1 of 17) protein_coding-intron (ENSMUSG00000027304.9, intron 1 of 17) 15074 ENSMUSG00000081416.1 ENSMUSG00000081416 ENSMUST00000121637 Gm14383 processed_pseudogene Interval_41899 chr13 4046490 4047428 + 0 NA intron (ENSMUSG00000110055.1, intron 5 of 7) unprocessed_pseudogene-intron (ENSMUSG00000110055.1, intron 5 of 7) 11714 ENSMUSG00000110055.1 ENSMUSG00000110055 ENSMUST00000210421 Gm18857 unprocessed_pseudogene Interval_73526 chr17 39127344 39127691 + 0 NA Intergenic Intergenic -7514 ENSMUSG00000117240.1 ENSMUSG00000117240 ENSMUST00000233660 Gm49827 unprocessed_pseudogene Interval_83256 chr18 83043974 83044886 + 0 NA intron (ENSMUSG00000118094.1, intron 2 of 6) processed_transcript-intron (ENSMUSG00000118094.1, intron 2 of 6) -23275 ENSMUSG00000117976.1 ENSMUSG00000117976 ENSMUST00000238101 Gm50437 lincRNA Interval_69070 chr16 90416313 90417387 + 0 NA intron (ENSMUSG00000053414.8, intron 1 of 10) protein_coding-intron (ENSMUSG00000053414.8, intron 1 of 10) 16306 ENSMUSG00000053414.8 ENSMUSG00000053414 ENSMUST00000231603 Hunk protein_coding Interval_111713 chr4 26494883 26495418 + 0 NA Intergenic Intergenic 6509 ENSMUSG00000081985.1 ENSMUSG00000081985 ENSMUST00000120523 Gng2-ps1 processed_pseudogene Interval_134465 chr6 28931158 28933040 + 0 NA intron (ENSMUSG00000001424.14, intron 16 of 16) protein_coding-intron (ENSMUSG00000001424.14, intron 16 of 16) -49535 ENSMUSG00000092090.2 ENSMUSG00000092090 ENSMUST00000164104 Gm3294 lincRNA Interval_64869 chr16 16828869 16830714 + 0 NA promoter-TSS (ENSMUSG00000022783.11) protein_coding-promoter-TSS (ENSMUSG00000022783.11) -471 ENSMUSG00000022783.11 ENSMUSG00000022783 ENSMUST00000141835 Spag6l protein_coding Interval_33791 chr11 118534606 118535083 + 0 NA intron (ENSMUSG00000025576.17, intron 3 of 13) protein_coding-intron (ENSMUSG00000025576.17, intron 4 of 14) -27491 ENSMUSG00000025576.17 ENSMUSG00000025576 ENSMUST00000134774 Rbfox3 protein_coding Interval_116546 chr4 115350646 115352670 + 0 NA intron (ENSMUSG00000083190.1, intron 2 of 7) unprocessed_pseudogene-intron (ENSMUSG00000083190.1, intron 2 of 7) 7870 ENSMUSG00000083190.1 ENSMUSG00000083190 ENSMUST00000120813 Cyp4a30-ps unprocessed_pseudogene Interval_28348 chr11 75314470 75314884 + 0 NA intron (ENSMUSG00000000751.13, intron 7 of 16) protein_coding-intron (ENSMUSG00000000751.13, intron 9 of 17) 3931 ENSMUSG00000106179.1 ENSMUSG00000106179 ENSMUST00000198372 Gm47300 miRNA Interval_16688 chr10 67038975 67039363 + 0 NA intron (ENSMUSG00000112925.1, intron 4 of 6) antisense-intron (ENSMUSG00000112925.1, intron 4 of 6) -1847 ENSMUSG00000019873.8 ENSMUSG00000019873 ENSMUST00000219431 Reep3 protein_coding Interval_18758 chr10 90051797 90052206 + 0 NA intron (ENSMUSG00000058589.14, intron 4 of 25) protein_coding-intron (ENSMUSG00000058589.14, intron 4 of 17) 82816 ENSMUSG00000112140.1 ENSMUSG00000112140 ENSMUST00000217774 Gm5780 processed_pseudogene Interval_115222 chr4 94540833 94541091 + 0 NA intron (ENSMUSG00000028578.8, intron 4 of 5) protein_coding-intron (ENSMUSG00000028578.8, intron 4 of 5) 15804 ENSMUSG00000028578.8 ENSMUSG00000028578 ENSMUST00000153294 Caap1 protein_coding Interval_120203 chr4 144247942 144248988 + 0 NA TTS (ENSMUSG00000083708.1) processed_pseudogene-TTS (ENSMUSG00000083708.1) 688 ENSMUSG00000083708.1 ENSMUSG00000083708 ENSMUST00000122173 Gm13123 processed_pseudogene Interval_123020 chr5 28484526 28486138 + 0 NA intron (ENSMUSG00000097726.7, intron 1 of 6) antisense-intron (ENSMUSG00000097726.7, intron 1 of 6) -18076 ENSMUSG00000002633.4 ENSMUSG00000002633 ENSMUST00000002708 Shh protein_coding Interval_71234 chr17 21473308 21475097 + 0 NA Intergenic Intergenic -14796 ENSMUSG00000057409.7 ENSMUSG00000057409 ENSMUST00000076664 Zfp53 protein_coding Interval_102634 chr3 28726678 28727535 + 0 NA exon (ENSMUSG00000027690.13, exon 10 of 11) protein_coding-exon (ENSMUSG00000027690.13, exon 10 of 11) 5589 ENSMUSG00000027690.13 ENSMUSG00000027690 ENSMUST00000169047 Slc2a2 protein_coding Interval_164848 chr9 42428139 42428523 + 0 NA promoter-TSS (ENSMUSG00000037287.15) protein_coding-promoter-TSS (ENSMUSG00000037287.15) -14521 ENSMUSG00000104589.1 ENSMUSG00000104589 ENSMUST00000196448 Gm44311 miRNA Interval_167971 chr9 75084196 75086971 + 0 NA intron (ENSMUSG00000034593.16, intron 1 of 40) protein_coding-intron (ENSMUSG00000034593.16, intron 1 of 40) 13557 ENSMUSG00000090001.1 ENSMUSG00000090001 ENSMUST00000162765 Gm9719 processed_pseudogene Interval_53319 chr14 56130255 56130496 + 0 NA exon (ENSMUSG00000059256.6, exon 4 of 5) protein_coding-exon (ENSMUSG00000059256.6, exon 4 of 5) 2233 ENSMUSG00000059256.6 ENSMUSG00000059256 ENSMUST00000082093 Gzmd protein_coding Interval_25087 chr11 43768168 43768738 + 0 NA Intergenic Intergenic -20461 ENSMUSG00000041278.10 ENSMUSG00000041278 ENSMUST00000147984 Ttc1 protein_coding Interval_99032 chr2 156752304 156752547 + 0 NA intron (ENSMUSG00000061689.15, intron 4 of 6) protein_coding-intron (ENSMUSG00000061689.15, intron 4 of 6) -23029 ENSMUSG00000067818.6 ENSMUSG00000067818 ENSMUST00000131622 Myl9 protein_coding Interval_84472 chr19 11547739 11547939 + 0 NA intron (ENSMUSG00000024678.6, intron 1 of 6) protein_coding-intron (ENSMUSG00000024678.6, intron 1 of 6) 11038 ENSMUSG00000024678.6 ENSMUSG00000024678 ENSMUST00000025581 Ms4a4d protein_coding Interval_23951 chr11 28734783 28735764 + 0 NA Intergenic Intergenic -10918 ENSMUSG00000076318.1 ENSMUSG00000076318 ENSMUST00000102363 Mir216b miRNA Interval_122355 chr5 21658054 21659517 + 0 NA intron (ENSMUSG00000038525.16, intron 4 of 5) protein_coding-intron (ENSMUSG00000038525.16, intron 4 of 5) 12972 ENSMUSG00000038525.16 ENSMUSG00000038525 ENSMUST00000139521 Armc10 protein_coding Interval_164894 chr9 42872476 42872927 + 0 NA intron (ENSMUSG00000032017.14, intron 1 of 20) protein_coding-intron (ENSMUSG00000032017.14, intron 1 of 20) -10572 ENSMUSG00000076355.2 ENSMUSG00000076355 ENSMUST00000102400 Gm27509 miRNA Interval_74568 chr17 53488232 53488529 + 0 NA intron (ENSMUSG00000017831.8, intron 2 of 5) protein_coding-intron (ENSMUSG00000017831.8, intron 2 of 5) 9093 ENSMUSG00000017831.8 ENSMUSG00000017831 ENSMUST00000233347 Rab5a protein_coding Interval_174532 chrX 157031953 157032500 + 0 NA Intergenic Intergenic -14696 ENSMUSG00000085711.4 ENSMUSG00000085711 ENSMUST00000120749 Gm15163 processed_pseudogene Interval_131205 chr5 135803190 135803925 + 0 NA Intergenic Intergenic 24872 ENSMUSG00000019179.10 ENSMUSG00000019179 ENSMUST00000143747 Mdh2 protein_coding Interval_94582 chr2 92431126 92431863 + 0 NA intron (ENSMUSG00000068742.11, intron 1 of 1) protein_coding-intron (ENSMUSG00000068742.11, intron 1 of 11) 898 ENSMUSG00000068742.11 ENSMUSG00000068742 ENSMUST00000144842 Cry2 protein_coding Interval_163491 chr9 21696688 21697254 + 0 NA intron (ENSMUSG00000032187.16, intron 29 of 33) protein_coding-intron (ENSMUSG00000032187.16, intron 29 of 33) 19058 ENSMUSG00000099192.1 ENSMUSG00000099192 ENSMUST00000184017 Gm27373 misc_RNA Interval_85840 chr19 32271175 32272388 + 0 NA intron (ENSMUSG00000040451.18, intron 2 of 9) protein_coding-intron (ENSMUSG00000040451.18, intron 3 of 9) 5183 ENSMUSG00000040451.18 ENSMUSG00000040451 ENSMUST00000141252 Sgms1 protein_coding Interval_39864 chr12 99200995 99201783 + 0 NA intron (ENSMUSG00000033713.12, intron 3 of 3) protein_coding-intron (ENSMUSG00000033713.12, intron 5 of 5) -38581 ENSMUSG00000113210.1 ENSMUSG00000113210 ENSMUST00000223511 4930474N09Rik lincRNA Interval_44768 chr13 48431379 48432138 + 0 NA Intergenic Intergenic -23246 ENSMUSG00000114695.1 ENSMUSG00000114695 ENSMUST00000225569 Gm48648 lincRNA Interval_41337 chr12 112920384 112920777 + 0 NA promoter-TSS (ENSMUSG00000098338.1) miRNA-promoter-TSS (ENSMUSG00000098338.1) -39 ENSMUSG00000098338.1 ENSMUSG00000098338 ENSMUST00000184711 Mir6941 miRNA Interval_39005 chr12 84408138 84409580 + 0 NA promoter-TSS (ENSMUSG00000057265.13) protein_coding-promoter-TSS (ENSMUSG00000057265.13) 125 ENSMUSG00000021236.16 ENSMUSG00000021236 ENSMUST00000136511 Entpd5 protein_coding Interval_79500 chr18 32414295 32416753 + 0 NA intron (ENSMUSG00000024381.16, intron 7 of 18) protein_coding-intron (ENSMUSG00000024381.16, intron 7 of 18) -37246 ENSMUSG00000097413.2 ENSMUSG00000097413 ENSMUST00000234408 A830052D11Rik lincRNA Interval_78982 chr18 23565608 23567074 + 0 NA intron (ENSMUSG00000024302.16, intron 4 of 17) protein_coding-intron (ENSMUSG00000024302.16, intron 4 of 11) 69506 ENSMUSG00000024302.16 ENSMUSG00000024302 ENSMUST00000222726 Dtna protein_coding Interval_112622 chr4 43655939 43656934 + 0 NA promoter-TSS (ENSMUSG00000028470.10) protein_coding-promoter-TSS (ENSMUSG00000028470.10) -693 ENSMUSG00000028470.10 ENSMUSG00000028470 ENSMUST00000155985 Hint2 protein_coding Interval_121324 chr4 154982860 154984275 + 0 NA TTS (ENSMUSG00000029055.17) protein_coding-TTS (ENSMUSG00000029055.17) 13568 ENSMUSG00000029056.13 ENSMUSG00000029056 ENSMUST00000129386 Pank4 protein_coding Interval_28731 chr11 77970854 77971604 + 0 NA intron (ENSMUSG00000000632.13, intron 5 of 15) protein_coding-intron (ENSMUSG00000000632.13, intron 5 of 15) 40190 ENSMUSG00000000632.13 ENSMUSG00000000632 ENSMUST00000126866 Sez6 protein_coding Interval_146277 chr7 45093141 45094034 + 0 NA intron (ENSMUSG00000003420.8, intron 6 of 6) protein_coding-intron (ENSMUSG00000003420.8, intron 6 of 6) 2178 ENSMUSG00000109947.1 ENSMUSG00000109947 ENSMUST00000209808 Gm45669 antisense Interval_6161 chr1 98366366 98366819 + 0 NA Intergenic Intergenic -91176 ENSMUSG00000089791.1 ENSMUSG00000089791 ENSMUST00000160287 Gm3555 processed_pseudogene Interval_51844 chr14 32786738 32786985 + 0 NA intron (ENSMUSG00000041707.8, intron 1 of 1) protein_coding-intron (ENSMUSG00000041707.8, intron 1 of 4) -21373 ENSMUSG00000041707.8 ENSMUSG00000041707 ENSMUST00000228955 Tmem273 protein_coding Interval_100263 chr2 168038806 168039310 + 0 NA Intergenic Intergenic 25839 ENSMUSG00000092849.1 ENSMUSG00000092849 ENSMUST00000175108 Gm24327 miRNA Interval_28596 chr11 77049704 77049918 + 0 NA TTS (ENSMUSG00000037958.13) protein_coding-TTS (ENSMUSG00000037958.13) -3136 ENSMUSG00000077639.1 ENSMUSG00000077639 ENSMUST00000104451 Gm22772 snoRNA Interval_75092 chr17 63247216 63248363 + 0 NA intron (ENSMUSG00000023965.13, intron 3 of 5) protein_coding-intron (ENSMUSG00000023965.13, intron 6 of 8) 45051 ENSMUSG00000088853.1 ENSMUSG00000088853 ENSMUST00000158228 Gm24730 snoRNA Interval_147378 chr7 66272255 66273061 + 0 NA intron (ENSMUSG00000015133.17, intron 6 of 14) protein_coding-intron (ENSMUSG00000015133.17, intron 27 of 33) -10188 ENSMUSG00000015133.17 ENSMUSG00000015133 ENSMUST00000154893 Lrrk1 protein_coding Interval_117881 chr4 126852987 126854099 + 0 NA TTS (ENSMUSG00000028830.14) protein_coding-TTS (ENSMUSG00000028830.14) 7569 ENSMUSG00000088984.1 ENSMUSG00000088984 ENSMUST00000158359 Gm25604 snoRNA Interval_131269 chr5 136083437 136085657 + 0 NA promoter-TSS (ENSMUSG00000004952.13) protein_coding-promoter-TSS (ENSMUSG00000004952.13) -6555 ENSMUSG00000004952.13 ENSMUSG00000004952 ENSMUST00000130598 Rasa4 protein_coding Interval_63988 chr16 5056055 5056961 + 0 NA intron (ENSMUSG00000039473.8, intron 2 of 17) protein_coding-intron (ENSMUSG00000039473.8, intron 3 of 18) 4374 ENSMUSG00000077367.1 ENSMUSG00000077367 ENSMUST00000104179 Gm23483 snRNA Interval_124146 chr5 38658579 38659346 + 0 NA Intergenic Intergenic 25864 ENSMUSG00000046572.10 ENSMUSG00000046572 ENSMUST00000178760 Zfp518b protein_coding Interval_160934 chr8 115313101 115313523 + 0 NA intron (ENSMUSG00000004637.15, intron 2 of 2) protein_coding-intron (ENSMUSG00000004637.15, intron 8 of 8) -260399 ENSMUSG00000088428.1 ENSMUSG00000088428 ENSMUST00000157803 Gm22556 rRNA Interval_18080 chr10 82157741 82160686 + 0 NA exon (ENSMUSG00000112922.1, exon 1 of 1) TEC-exon (ENSMUSG00000112922.1, exon 1 of 1) 2112 ENSMUSG00000112922.1 ENSMUSG00000112922 ENSMUST00000219013 Gm47572 TEC Interval_35834 chr12 31043171 31043714 + 0 NA Intergenic Intergenic 12585 ENSMUSG00000112890.1 ENSMUSG00000112890 ENSMUST00000218679 Gm18502 processed_pseudogene Interval_120339 chr4 147996104 147997928 + 0 NA Intergenic Intergenic -3706 ENSMUSG00000041616.9 ENSMUSG00000041616 ENSMUST00000103230 Nppa protein_coding Interval_31154 chr11 98484918 98485978 + 0 NA intron (ENSMUSG00000018168.8, intron 2 of 2) protein_coding-intron (ENSMUSG00000018168.8, intron 6 of 7) -8045 ENSMUSG00000018168.8 ENSMUSG00000018168 ENSMUST00000152400 Ikzf3 protein_coding Interval_15518 chr10 50600616 50601135 + 0 NA intron (ENSMUSG00000038774.9, intron 1 of 5) protein_coding-intron (ENSMUSG00000038774.9, intron 1 of 41) 4059 ENSMUSG00000038774.9 ENSMUSG00000038774 ENSMUST00000217725 Ascc3 protein_coding Interval_9966 chr1 164435212 164436240 + 0 NA intron (ENSMUSG00000026575.15, intron 14 of 15) protein_coding-intron (ENSMUSG00000026575.15, intron 12 of 12) 7993 ENSMUSG00000026576.12 ENSMUSG00000026576 ENSMUST00000192522 Atp1b1 protein_coding Interval_89421 chr2 20584940 20585801 + 0 NA intron (ENSMUSG00000036617.17, intron 1 of 2) protein_coding-intron (ENSMUSG00000036617.17, intron 3 of 18) 25566 ENSMUSG00000098575.1 ENSMUSG00000098575 ENSMUST00000183963 Gm27446 misc_RNA Interval_168407 chr9 80100690 80100928 + 0 NA intron (ENSMUSG00000034252.14, intron 4 of 6) protein_coding-intron (ENSMUSG00000034252.14, intron 5 of 22) 21128 ENSMUSG00000084917.3 ENSMUSG00000084917 ENSMUST00000165458 Gm17477 antisense Interval_39376 chr12 86981065 86981419 + 0 NA exon (ENSMUSG00000048483.6, exon 3 of 3) protein_coding-exon (ENSMUSG00000048483.6, exon 3 of 3) 2593 ENSMUSG00000048483.6 ENSMUSG00000048483 ENSMUST00000095521 Zdhhc22 protein_coding Interval_76666 chr17 83312304 83313786 + 0 NA Intergenic Intergenic 24499 ENSMUSG00000094256.2 ENSMUSG00000094256 ENSMUST00000077420 Rpl21-ps7 processed_pseudogene Interval_165346 chr9 46467144 46467422 + 0 NA Intergenic Intergenic 37790 ENSMUSG00000111115.1 ENSMUSG00000111115 ENSMUST00000214085 Gm47144 lincRNA Interval_45784 chr13 58056578 58056900 + 0 NA intron (ENSMUSG00000014164.15, intron 5 of 14) protein_coding-intron (ENSMUSG00000014164.15, intron 7 of 16) -33539 ENSMUSG00000077962.1 ENSMUSG00000077962 ENSMUST00000104769 Mir874 miRNA Interval_75826 chr17 71661218 71661463 + 0 NA Intergenic Intergenic 18644 ENSMUSG00000041057.10 ENSMUSG00000041057 ENSMUST00000234339 Wdr43 protein_coding Interval_127521 chr5 104811305 104811617 + 0 NA Intergenic Intergenic 35682 ENSMUSG00000048334.8 ENSMUSG00000048334 ENSMUST00000055593 Gm8258 processed_pseudogene Interval_88784 chr2 10700910 10702278 + 0 NA Intergenic Intergenic 183439 ENSMUSG00000080594.1 ENSMUSG00000080594 ENSMUST00000116944 Mir669h miRNA Interval_103467 chr3 41862833 41863762 + 0 NA Intergenic Intergenic 90116 ENSMUSG00000103952.1 ENSMUSG00000103952 ENSMUST00000192254 Gm37268 TEC Interval_7949 chr1 134741594 134742752 + 0 NA TTS (ENSMUSG00000026452.15) protein_coding-TTS (ENSMUSG00000026452.15) 59812 ENSMUSG00000103614.1 ENSMUSG00000103614 ENSMUST00000192808 Gm37949 TEC Interval_163148 chr9 15772837 15773643 + 0 NA Intergenic Intergenic 46352 ENSMUSG00000043885.14 ENSMUSG00000043885 ENSMUST00000214954 Slc36a4 protein_coding Interval_43695 chr13 35155872 35156258 + 0 NA Intergenic Intergenic 11739 ENSMUSG00000113906.1 ENSMUSG00000113906 ENSMUST00000220538 4930529N20Rik lincRNA Interval_116851 chr4 117681140 117682589 + 0 NA exon (ENSMUSG00000009640.11, exon 2 of 11) protein_coding-exon (ENSMUSG00000009640.11, exon 2 of 11) 389 ENSMUSG00000009640.11 ENSMUSG00000009640 ENSMUST00000127750 Dmap1 protein_coding Interval_118160 chr4 129292627 129294594 + 0 NA exon (ENSMUSG00000001333.9, exon 2 of 5) protein_coding-exon (ENSMUSG00000001333.9, exon 2 of 5) 5979 ENSMUSG00000001333.9 ENSMUSG00000001333 ENSMUST00000146448 Sync protein_coding Interval_110231 chr3 154646614 154648403 + 0 NA Intergenic Intergenic -9193 ENSMUSG00000103204.1 ENSMUSG00000103204 ENSMUST00000195806 Gm38139 sense_overlapping Interval_80891 chr18 49958613 49958793 + 0 NA exon (ENSMUSG00000037416.13, exon 1 of 1) protein_coding-exon (ENSMUSG00000037416.13, exon 1 of 1) 35990 ENSMUSG00000037416.13 ENSMUSG00000037416 ENSMUST00000181042 Dmxl1 protein_coding Interval_61096 chr15 79209154 79210249 + 0 NA intron (ENSMUSG00000075555.12, intron 1 of 3) processed_transcript-intron (ENSMUSG00000075555.12, intron 3 of 4) -19690 ENSMUSG00000116121.1 ENSMUSG00000116121 ENSMUST00000053926 Gm49486 protein_coding Interval_31419 chr11 100570368 100571122 + 0 NA TTS (ENSMUSG00000006784.14) protein_coding-TTS (ENSMUSG00000006784.14) -4779 ENSMUSG00000006782.16 ENSMUSG00000006782 ENSMUST00000147403 Cnp protein_coding Interval_92923 chr2 68674578 68675005 + 0 NA intron (ENSMUSG00000079324.11, intron 7 of 28) protein_coding-intron (ENSMUSG00000079324.11, intron 6 of 27) -41500 ENSMUSG00000079324.11 ENSMUSG00000079324 ENSMUST00000135023 4932414N04Rik protein_coding Interval_92147 chr2 54157971 54159485 + 0 NA Intergenic Intergenic 58298 ENSMUSG00000064596.1 ENSMUSG00000064596 ENSMUST00000082662 Gm22298 snoRNA Interval_158749 chr8 85853784 85855465 + 0 NA promoter-TSS (ENSMUSG00000090043.1) processed_pseudogene-promoter-TSS (ENSMUSG00000090043.1) -187 ENSMUSG00000090043.1 ENSMUSG00000090043 ENSMUST00000160428 Gm16167 processed_pseudogene Interval_5374 chr1 88120409 88121211 + 0 NA intron (ENSMUSG00000090145.7, intron 2 of 5) protein_coding-intron (ENSMUSG00000090124.7, intron 1 of 4) -5966 ENSMUSG00000084195.2 ENSMUSG00000084195 ENSMUST00000239178 Gm15372 unprocessed_pseudogene Interval_98999 chr2 156542489 156542815 + 0 NA exon (ENSMUSG00000027624.20, exon 22 of 22) protein_coding-exon (ENSMUSG00000027624.20, exon 22 of 22) -4958 ENSMUSG00000027628.10 ENSMUSG00000027628 ENSMUST00000126250 Aar2 protein_coding Interval_160046 chr8 105997804 105998379 + 0 NA intron (ENSMUSG00000115768.1, intron 1 of 1) protein_coding-intron (ENSMUSG00000031901.12, intron 2 of 2) -1697 ENSMUSG00000115067.1 ENSMUSG00000115067 ENSMUST00000227363 Dpep2 protein_coding Interval_91191 chr2 35768043 35768371 + 0 NA intron (ENSMUSG00000026885.13, intron 7 of 7) protein_coding-intron (ENSMUSG00000026885.13, intron 9 of 9) -2328 ENSMUSG00000107106.1 ENSMUSG00000107106 ENSMUST00000202120 Gm43760 TEC Interval_146982 chr7 56946524 56947069 + 0 NA intron (ENSMUSG00000055026.13, intron 5 of 9) protein_coding-intron (ENSMUSG00000055026.13, intron 5 of 9) 67785 ENSMUSG00000108556.1 ENSMUSG00000108556 ENSMUST00000206902 Gm17987 processed_pseudogene Interval_79374 chr18 31411809 31412280 + 0 NA Intergenic Intergenic -21941 ENSMUSG00000095685.1 ENSMUSG00000095685 ENSMUST00000179362 Gm23283 miRNA Interval_143994 chr7 18851271 18851834 + 0 NA intron (ENSMUSG00000040987.15, intron 3 of 7) protein_coding-intron (ENSMUSG00000040987.15, intron 2 of 5) 11586 ENSMUSG00000040987.15 ENSMUSG00000040987 ENSMUST00000207014 Mill2 protein_coding Interval_65859 chr16 29848614 29849080 + 0 NA Intergenic Intergenic -14119 ENSMUSG00000116891.1 ENSMUSG00000116891 ENSMUST00000232318 Gm32679 lincRNA Interval_139876 chr6 112210649 112211055 + 0 NA intron (ENSMUSG00000100219.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000100219.1, intron 1 of 2) 144 ENSMUSG00000100219.1 ENSMUSG00000100219 ENSMUST00000186102 1700054K19Rik lincRNA Interval_74257 chr17 47759344 47759917 + 0 NA intron (ENSMUSG00000023990.18, intron 1 of 1) protein_coding-intron (ENSMUSG00000023990.18, intron 1 of 8) -28280 ENSMUSG00000023990.18 ENSMUSG00000023990 ENSMUST00000140715 Tfeb protein_coding Interval_34315 chr12 3341869 3342063 + 0 NA Intergenic Intergenic 15187 ENSMUSG00000097429.1 ENSMUSG00000097429 ENSMUST00000180719 Gm26520 lincRNA Interval_100014 chr2 166512404 166512961 + 0 NA intron (ENSMUSG00000085682.2, intron 2 of 5) transcribed_processed_pseudogene-intron (ENSMUSG00000085682.2, intron 2 of 5) -3508 ENSMUSG00000085682.2 ENSMUSG00000085682 ENSMUST00000123480 Gm14267 transcribed_processed_pseudogene Interval_20340 chr10 116992665 116994174 + 0 NA intron (ENSMUSG00000020169.4, intron 4 of 9) protein_coding-intron (ENSMUSG00000020169.4, intron 4 of 9) 7105 ENSMUSG00000020169.4 ENSMUSG00000020169 ENSMUST00000020378 Best3 protein_coding Interval_116159 chr4 108228785 108229178 + 0 NA TTS (ENSMUSG00000034636.9) protein_coding-TTS (ENSMUSG00000034636.9) -11059 ENSMUSG00000034645.14 ENSMUSG00000034645 ENSMUST00000106690 Zyg11a protein_coding Interval_173582 chrX 99885761 99886078 + 0 NA Intergenic Intergenic 64898 ENSMUSG00000071719.2 ENSMUSG00000071719 ENSMUST00000096363 Tmem28 protein_coding Interval_18780 chr10 90690115 90690875 + 0 NA intron (ENSMUSG00000058589.14, intron 4 of 11) protein_coding-intron (ENSMUSG00000058589.14, intron 3 of 11) -38465 ENSMUSG00000112153.1 ENSMUSG00000112153 ENSMUST00000218673 Gm47591 sense_intronic Interval_97794 chr2 144126994 144127796 + 0 NA intron (ENSMUSG00000074758.10, intron 1 of 2) lincRNA-intron (ENSMUSG00000074758.10, intron 2 of 3) 15978 ENSMUSG00000082480.1 ENSMUSG00000082480 ENSMUST00000118911 Gm11687 processed_pseudogene Interval_64226 chr16 9333488 9334195 + 0 NA Intergenic Intergenic 175071 ENSMUSG00000116123.1 ENSMUSG00000116123 ENSMUST00000229655 Gm49451 lincRNA Interval_100532 chr2 169976406 169976981 + 0 NA intron (ENSMUSG00000047907.11, intron 1 of 1) protein_coding-intron (ENSMUSG00000047907.11, intron 1 of 1) -13506 ENSMUSG00000103935.1 ENSMUSG00000103935 ENSMUST00000194482 AY702102 TEC Interval_85085 chr19 22552322 22553714 + 0 NA intron (ENSMUSG00000052387.16, intron 1 of 24) protein_coding-intron (ENSMUSG00000052387.16, intron 1 of 26) -104153 ENSMUSG00000098739.1 ENSMUSG00000098739 ENSMUST00000185015 Gm27151 antisense Interval_161650 chr8 121793820 121794966 + 0 NA TTS (ENSMUSG00000025318.13) protein_coding-TTS (ENSMUSG00000025318.13) -12022 ENSMUSG00000092418.1 ENSMUSG00000092418 ENSMUST00000173993 Gm20406 antisense Interval_57650 chr15 13212005 13213015 + 0 NA Intergenic Intergenic -38835 ENSMUSG00000039385.5 ENSMUSG00000039385 ENSMUST00000226917 Cdh6 protein_coding Interval_94609 chr2 92628852 92629152 + 0 NA Intergenic Intergenic 29295 ENSMUSG00000027221.5 ENSMUSG00000027221 ENSMUST00000065797 Chst1 protein_coding Interval_32080 chr11 105156727 105157426 + 0 NA Intergenic Intergenic 9544 ENSMUSG00000081965.1 ENSMUSG00000081965 ENSMUST00000118770 Gm11620 processed_pseudogene Interval_138341 chr6 87399073 87399685 + 0 NA Intergenic Intergenic -10444 ENSMUSG00000030048.5 ENSMUSG00000030048 ENSMUST00000032127 Gkn3 protein_coding Interval_51962 chr14 34297233 34298355 + 0 NA promoter-TSS (ENSMUSG00000041471.9) protein_coding-promoter-TSS (ENSMUSG00000041471.9) 12591 ENSMUSG00000041471.9 ENSMUSG00000041471 ENSMUST00000228132 Shld2 protein_coding Interval_116319 chr4 109700656 109700971 + 0 NA intron (ENSMUSG00000010517.7, intron 1 of 18) protein_coding-intron (ENSMUSG00000010517.7, intron 1 of 18) -33624 ENSMUSG00000028551.14 ENSMUSG00000028551 ENSMUST00000097921 Cdkn2c protein_coding Interval_46149 chr13 62029998 62030577 + 0 NA intron (ENSMUSG00000113836.1, intron 1 of 2) transcribed_processed_pseudogene-intron (ENSMUSG00000113836.1, intron 1 of 3) -5135 ENSMUSG00000074868.2 ENSMUSG00000074868 ENSMUST00000099450 Gm6478 processed_pseudogene Interval_13332 chr10 15345555 15346886 + 0 NA intron (ENSMUSG00000112928.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000112928.1, intron 1 of 1) 45989 ENSMUSG00000112928.1 ENSMUSG00000112928 ENSMUST00000217695 Gm47710 lincRNA Interval_138429 chr6 88136301 88136882 + 0 NA Intergenic Intergenic -32333 ENSMUSG00000099095.1 ENSMUSG00000099095 ENSMUST00000185149 Mir6376 miRNA Interval_131426 chr5 137111744 137112052 + 0 NA exon (ENSMUSG00000043279.9, exon 3 of 3) protein_coding-exon (ENSMUSG00000043279.9, exon 3 of 3) 4311 ENSMUSG00000043279.9 ENSMUSG00000043279 ENSMUST00000152207 Trim56 protein_coding Interval_168426 chr9 80208621 80208900 + 0 NA intron (ENSMUSG00000033577.18, intron 1 of 35) protein_coding-intron (ENSMUSG00000033577.18, intron 1 of 32) 43533 ENSMUSG00000033577.18 ENSMUSG00000033577 ENSMUST00000138650 Myo6 protein_coding Interval_115552 chr4 100728837 100729313 + 0 NA Intergenic Intergenic 147797 ENSMUSG00000082601.1 ENSMUSG00000082601 ENSMUST00000118145 Gm12700 processed_pseudogene Interval_74535 chr17 53107668 53108352 + 0 NA Intergenic Intergenic -88441 ENSMUSG00000117244.1 ENSMUSG00000117244 ENSMUST00000233156 Gm9210 processed_pseudogene Interval_122914 chr5 27295472 27296551 + 0 NA intron (ENSMUSG00000061576.15, intron 1 of 25) protein_coding-intron (ENSMUSG00000061576.15, intron 1 of 25) 77826 ENSMUSG00000106537.1 ENSMUSG00000106537 ENSMUST00000200263 Gm43502 TEC Interval_120040 chr4 141488492 141489152 + 0 NA promoter-TSS (ENSMUSG00000040761.16) protein_coding-promoter-TSS (ENSMUSG00000040761.16) -510 ENSMUSG00000040761.16 ENSMUSG00000040761 ENSMUST00000152081 Spen protein_coding Interval_71221 chr17 21352835 21353526 + 0 NA Intergenic Intergenic -13667 ENSMUSG00000116768.1 ENSMUSG00000116768 ENSMUST00000231877 Gm18269 processed_pseudogene Interval_56644 chr14 121106416 121106678 + 0 NA intron (ENSMUSG00000025555.14, intron 1 of 7) protein_coding-intron (ENSMUSG00000025555.14, intron 2 of 26) 4468 ENSMUSG00000025555.14 ENSMUSG00000025555 ENSMUST00000137971 Farp1 protein_coding Interval_128262 chr5 112126780 112127689 + 0 NA Intergenic Intergenic -29003 ENSMUSG00000104538.1 ENSMUSG00000104538 ENSMUST00000197688 1700016B01Rik lincRNA Interval_163484 chr9 21669601 21670492 + 0 NA intron (ENSMUSG00000032187.16, intron 21 of 33) protein_coding-intron (ENSMUSG00000032187.16, intron 21 of 33) -7867 ENSMUSG00000099192.1 ENSMUSG00000099192 ENSMUST00000184017 Gm27373 misc_RNA Interval_74348 chr17 49208481 49209005 + 0 NA Intergenic Intergenic -42985 ENSMUSG00000117115.1 ENSMUSG00000117115 ENSMUST00000233339 Gm9586 processed_pseudogene Interval_167408 chr9 68785714 68786023 + 0 NA intron (ENSMUSG00000032238.17, intron 1 of 5) protein_coding-intron (ENSMUSG00000032238.17, intron 1 of 10) 131977 ENSMUSG00000032238.17 ENSMUSG00000032238 ENSMUST00000113624 Rora protein_coding Interval_4249 chr1 72166031 72167809 + 0 NA intron (ENSMUSG00000039395.8, intron 2 of 4) protein_coding-intron (ENSMUSG00000039395.8, intron 2 of 4) -44919 ENSMUSG00000102123.1 ENSMUSG00000102123 ENSMUST00000191139 Gm4319 lincRNA Interval_141991 chr6 136413316 136413664 + 0 NA intron (ENSMUSG00000045291.8, intron 1 of 1) protein_coding-intron (ENSMUSG00000045291.8, intron 1 of 1) 2079 ENSMUSG00000045291.8 ENSMUSG00000045291 ENSMUST00000203392 E330021D16Rik protein_coding Interval_140260 chr6 115852810 115854260 + 0 NA promoter-TSS (ENSMUSG00000030322.12) protein_coding-promoter-TSS (ENSMUSG00000030322.12) -53 ENSMUSG00000030323.13 ENSMUSG00000030323 ENSMUST00000155565 Ift122 protein_coding Interval_72470 chr17 30024803 30025681 + 0 NA intron (ENSMUSG00000044477.12, intron 1 of 4) protein_coding-intron (ENSMUSG00000044477.12, intron 1 of 4) -20551 ENSMUSG00000117371.1 ENSMUSG00000117371 ENSMUST00000233996 Gm50019 bidirectional_promoter_lncRNA Interval_78962 chr18 23100017 23101460 + 0 NA Intergenic Intergenic -46356 ENSMUSG00000077680.1 ENSMUSG00000077680 ENSMUST00000104492 Gm22495 snoRNA Interval_109049 chr3 135460116 135460910 + 0 NA TTS (ENSMUSG00000078578.9) protein_coding-TTS (ENSMUSG00000078578.9) -21848 ENSMUSG00000097032.2 ENSMUSG00000097032 ENSMUST00000181619 4930539J05Rik antisense Interval_150683 chr7 113294734 113295966 + 0 NA promoter-TSS (ENSMUSG00000109959.1) antisense-promoter-TSS (ENSMUSG00000109959.1) -13 ENSMUSG00000109959.1 ENSMUSG00000109959 ENSMUST00000211342 Gm45355 antisense Interval_59513 chr15 54854547 54855267 + 0 NA intron (ENSMUSG00000022425.16, intron 19 of 25) protein_coding-intron (ENSMUSG00000022425.16, intron 19 of 24) 7779 ENSMUSG00000022425.16 ENSMUSG00000022425 ENSMUST00000226339 Enpp2 protein_coding Interval_87952 chr19 57355501 57356067 + 0 NA intron (ENSMUSG00000097785.2, intron 1 of 2) processed_transcript-intron (ENSMUSG00000097785.2, intron 1 of 2) 4955 ENSMUSG00000097785.2 ENSMUSG00000097785 ENSMUST00000181921 B230217O12Rik processed_transcript Interval_103367 chr3 40487950 40488273 + 0 NA Intergenic Intergenic 21663 ENSMUSG00000037884.6 ENSMUSG00000037884 ENSMUST00000202778 1700017G19Rik lincRNA Interval_55395 chr14 86573657 86574084 + 0 NA Intergenic Intergenic -61799 ENSMUSG00000115776.1 ENSMUSG00000115776 ENSMUST00000228733 Gm49158 processed_pseudogene Interval_52826 chr14 50903805 50904816 + 0 NA Intergenic Intergenic -6803 ENSMUSG00000090799.2 ENSMUSG00000090799 ENSMUST00000170855 Klhl33 protein_coding Interval_40672 chr12 106828907 106830124 + 0 NA Intergenic Intergenic -8467 ENSMUSG00000085801.1 ENSMUSG00000085801 ENSMUST00000156376 1700013N06Rik lincRNA Interval_9019 chr1 153108891 153110278 + 0 NA intron (ENSMUSG00000042751.14, intron 8 of 11) protein_coding-intron (ENSMUSG00000042751.14, intron 8 of 10) 16104 ENSMUSG00000042751.14 ENSMUSG00000042751 ENSMUST00000190960 Nmnat2 protein_coding Interval_46122 chr13 61853247 61853524 + 0 NA intron (ENSMUSG00000113626.1, intron 1 of 2) transcribed_processed_pseudogene-intron (ENSMUSG00000113626.1, intron 1 of 2) -29721 ENSMUSG00000080451.1 ENSMUSG00000080451 ENSMUST00000116801 Gm24193 miRNA Interval_88670 chr2 9469032 9469347 + 0 NA Intergenic Intergenic -106647 ENSMUSG00000081202.1 ENSMUSG00000081202 ENSMUST00000121535 Gm13220 processed_pseudogene Interval_23879 chr11 27550370 27550594 + 0 NA Intergenic Intergenic -42382 ENSMUSG00000082243.1 ENSMUSG00000082243 ENSMUST00000122413 Gm3810 processed_pseudogene Interval_139784 chr6 108685516 108688866 + 0 NA Intergenic Intergenic 24145 ENSMUSG00000030103.11 ENSMUSG00000030103 ENSMUST00000204550 Bhlhe40 protein_coding Interval_14757 chr10 39623700 39624002 + 0 NA intron (ENSMUSG00000087177.7, intron 2 of 2) protein_coding-intron (ENSMUSG00000019842.6, intron 1 of 8) -10169 ENSMUSG00000086915.7 ENSMUSG00000086915 ENSMUST00000143877 Gm16364 antisense Interval_130836 chr5 131104990 131105275 + 0 NA intron (ENSMUSG00000034040.16, intron 3 of 3) protein_coding-intron (ENSMUSG00000034040.16, intron 3 of 10) 29579 ENSMUSG00000106710.1 ENSMUSG00000106710 ENSMUST00000202871 Gm43166 sense_intronic Interval_60355 chr15 73139801 73140894 + 0 NA intron (ENSMUSG00000036698.11, intron 2 of 4) protein_coding-intron (ENSMUSG00000036698.11, intron 2 of 18) 37500 ENSMUSG00000036698.11 ENSMUSG00000036698 ENSMUST00000230464 Ago2 protein_coding Interval_51734 chr14 31775184 31775536 + 0 NA intron (ENSMUSG00000014496.8, intron 1 of 5) protein_coding-intron (ENSMUSG00000014496.8, intron 2 of 27) -20946 ENSMUSG00000115210.1 ENSMUSG00000115210 ENSMUST00000227034 Gm49308 TEC Interval_119421 chr4 137559055 137559475 + 0 NA intron (ENSMUSG00000028763.18, intron 79 of 96) protein_coding-intron (ENSMUSG00000028763.18, intron 79 of 96) 20979 ENSMUSG00000099134.1 ENSMUSG00000099134 ENSMUST00000184284 Mir7018 miRNA Interval_13316 chr10 14688229 14688443 + 0 NA intron (ENSMUSG00000019868.16, intron 1 of 7) protein_coding-intron (ENSMUSG00000019868.16, intron 1 of 6) -17255 ENSMUSG00000019865.9 ENSMUSG00000019865 ENSMUST00000190751 Nmbr protein_coding Interval_34816 chr12 12145075 12145634 + 0 NA Intergenic Intergenic 38617 ENSMUSG00000089047.1 ENSMUSG00000089047 ENSMUST00000158422 Gm26171 rRNA Interval_101400 chr2 181056853 181057977 + 0 NA Intergenic Intergenic -29087 ENSMUSG00000027577.14 ENSMUSG00000027577 ENSMUST00000124400 Chrna4 protein_coding Interval_108775 chr3 131203986 131204941 + 0 NA TTS (ENSMUSG00000027985.14) protein_coding-TTS (ENSMUSG00000027985.14) 67561 ENSMUSG00000027984.8 ENSMUSG00000027984 ENSMUST00000152427 Hadh protein_coding Interval_127825 chr5 108051854 108052914 + 0 NA Intergenic Intergenic 3532 ENSMUSG00000096920.1 ENSMUSG00000096920 ENSMUST00000180714 Rps19-ps8 processed_pseudogene Interval_3595 chr1 59840707 59840952 + 0 NA intron (ENSMUSG00000067336.6, intron 3 of 12) protein_coding-intron (ENSMUSG00000067336.6, intron 3 of 12) -9836 ENSMUSG00000067336.6 ENSMUSG00000067336 ENSMUST00000186246 Bmpr2 protein_coding Interval_124573 chr5 51473969 51474200 + 0 NA exon (ENSMUSG00000029167.13, exon 8 of 13) protein_coding-exon (ENSMUSG00000029167.13, exon 8 of 13) 10221 ENSMUSG00000105442.1 ENSMUSG00000105442 ENSMUST00000198724 Gm42614 TEC Interval_23831 chr11 26766837 26767069 + 0 NA Intergenic Intergenic -19680 ENSMUSG00000069939.8 ENSMUSG00000069939 ENSMUST00000119551 Gm12070 processed_pseudogene Interval_45338 chr13 54556664 54556913 + 0 NA intron (ENSMUSG00000025871.18, intron 1 of 4) protein_coding-intron (ENSMUSG00000025871.18, intron 5 of 8) 8545 ENSMUSG00000025871.18 ENSMUSG00000025871 ENSMUST00000126295 4833439L19Rik protein_coding Interval_44717 chr13 47693502 47693883 + 0 NA Intergenic Intergenic 26142 ENSMUSG00000114509.1 ENSMUSG00000114509 ENSMUST00000223996 4930471G24Rik lincRNA Interval_77741 chr17 94826114 94826722 + 0 NA intron (ENSMUSG00000066057.7, intron 1 of 4) processed_transcript-intron (ENSMUSG00000066057.7, intron 1 of 3) 8380 ENSMUSG00000066057.7 ENSMUSG00000066057 ENSMUST00000234446 Gm1976 processed_transcript Interval_147489 chr7 67700231 67701759 + 0 NA intron (ENSMUSG00000030555.16, intron 3 of 6) protein_coding-intron (ENSMUSG00000030555.16, intron 8 of 11) -19692 ENSMUSG00000109115.1 ENSMUSG00000109115 ENSMUST00000207774 Gm44669 TEC Interval_65817 chr16 29315037 29315313 + 0 NA intron (ENSMUSG00000048939.13, intron 10 of 28) protein_coding-intron (ENSMUSG00000048939.13, intron 11 of 29) -30816 ENSMUSG00000083141.1 ENSMUSG00000083141 ENSMUST00000117427 Gm15752 processed_pseudogene Interval_39709 chr12 94247053 94248048 + 0 NA Intergenic Intergenic -187849 ENSMUSG00000113215.1 ENSMUSG00000113215 ENSMUST00000222410 Gm18749 processed_pseudogene Interval_11556 chr1 182668675 182671031 + 0 NA Intergenic Intergenic -10086 ENSMUSG00000104376.1 ENSMUSG00000104376 ENSMUST00000192593 Gm37516 TEC Interval_84571 chr19 12802771 12803016 + 0 NA intron (ENSMUSG00000024696.9, intron 1 of 8) protein_coding-intron (ENSMUSG00000024696.9, intron 1 of 8) 6700 ENSMUSG00000024696.9 ENSMUSG00000024696 ENSMUST00000025601 Lpxn protein_coding Interval_166830 chr9 63082574 63083195 + 0 NA promoter-TSS (ENSMUSG00000111144.1) lincRNA-promoter-TSS (ENSMUSG00000111144.1) 89 ENSMUSG00000111144.1 ENSMUSG00000111144 ENSMUST00000214934 Gm48193 lincRNA Interval_70975 chr17 16956931 16957543 + 0 NA intron (ENSMUSG00000060149.7, intron 1 of 2) lincRNA-intron (ENSMUSG00000060149.7, intron 1 of 2) 5685 ENSMUSG00000060149.7 ENSMUSG00000060149 ENSMUST00000071374 BC002059 lincRNA Interval_166405 chr9 59172017 59172254 + 0 NA Intergenic Intergenic -25925 ENSMUSG00000066592.3 ENSMUSG00000066592 ENSMUST00000085631 Gm7589 processed_pseudogene Interval_48209 chr13 97188498 97188851 + 0 NA intron (ENSMUSG00000021665.9, intron 4 of 5) protein_coding-intron (ENSMUSG00000021665.9, intron 5 of 13) 9621 ENSMUSG00000021665.9 ENSMUSG00000021665 ENSMUST00000222700 Hexb protein_coding Interval_72352 chr17 29368160 29368380 + 0 NA promoter-TSS (ENSMUSG00000024013.15) protein_coding-promoter-TSS (ENSMUSG00000024013.15) -5081 ENSMUSG00000024013.15 ENSMUSG00000024013 ENSMUST00000144616 Fgd2 protein_coding Interval_108390 chr3 126565250 126565597 + 0 NA Intergenic Intergenic -31783 ENSMUSG00000053819.16 ENSMUSG00000053819 ENSMUST00000198637 Camk2d protein_coding Interval_78939 chr18 22235923 22236423 + 0 NA Intergenic Intergenic -64731 ENSMUSG00000024306.13 ENSMUSG00000024306 ENSMUST00000234661 Ccdc178 protein_coding Interval_32777 chr11 110482978 110483820 + 0 NA intron (ENSMUSG00000020623.11, intron 2 of 9) protein_coding-intron (ENSMUSG00000020623.11, intron 2 of 11) 6022 ENSMUSG00000020623.11 ENSMUSG00000020623 ENSMUST00000133920 Map2k6 protein_coding Interval_84181 chr19 8556628 8556892 + 0 NA Intergenic Intergenic -14962 ENSMUSG00000110298.1 ENSMUSG00000110298 ENSMUST00000211159 Gm8189 transcribed_unprocessed_pseudogene Interval_27464 chr11 68024049 68024286 + 0 NA intron (ENSMUSG00000020903.13, intron 5 of 6) protein_coding-intron (ENSMUSG00000020903.13, intron 6 of 7) 11543 ENSMUSG00000082266.1 ENSMUSG00000082266 ENSMUST00000119506 Gm12303 processed_pseudogene Interval_149513 chr7 99267213 99269827 + 0 NA promoter-TSS (ENSMUSG00000055407.14) protein_coding-promoter-TSS (ENSMUSG00000055407.14) -612 ENSMUSG00000055407.14 ENSMUSG00000055407 ENSMUST00000209094 Map6 protein_coding Interval_38051 chr12 75307998 75309163 + 0 NA promoter-TSS (ENSMUSG00000046768.13) protein_coding-promoter-TSS (ENSMUSG00000046768.13) -301 ENSMUSG00000046768.13 ENSMUSG00000046768 ENSMUST00000172981 Rhoj protein_coding Interval_82103 chr18 67742656 67742840 + 0 NA Intergenic Intergenic 32109 ENSMUSG00000097835.1 ENSMUSG00000097835 ENSMUST00000180450 Gm26910 bidirectional_promoter_lncRNA Interval_2310 chr1 37956540 37957321 + 0 NA intron (ENSMUSG00000026085.11, intron 1 of 5) protein_coding-intron (ENSMUSG00000026085.11, intron 1 of 5) -7931 ENSMUSG00000026085.11 ENSMUSG00000026085 ENSMUST00000114894 Lyg1 protein_coding Interval_32163 chr11 105837685 105838138 + 0 NA intron (ENSMUSG00000053580.16, intron 9 of 25) protein_coding-intron (ENSMUSG00000053580.16, intron 9 of 25) -37994 ENSMUSG00000081270.1 ENSMUSG00000081270 ENSMUST00000119992 Gm11653 processed_pseudogene Interval_120635 chr4 149808106 149808583 + 0 NA Intergenic Intergenic 6878 ENSMUSG00000083173.1 ENSMUSG00000083173 ENSMUST00000119125 Gm13064 processed_pseudogene Interval_65733 chr16 26317351 26317832 + 0 NA Intergenic Intergenic 43203 ENSMUSG00000022512.3 ENSMUSG00000022512 ENSMUST00000232215 Cldn1 protein_coding Interval_13894 chr10 24357696 24358104 + 0 NA Intergenic Intergenic -89590 ENSMUSG00000086148.1 ENSMUSG00000086148 ENSMUST00000134627 Gm15271 lincRNA Interval_27129 chr11 63180011 63181072 + 0 NA intron (ENSMUSG00000085532.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000085532.1, intron 1 of 1) 6627 ENSMUSG00000085532.1 ENSMUSG00000085532 ENSMUST00000123420 B430319H21Rik lincRNA Interval_115151 chr4 91640063 91640957 + 0 NA Intergenic Intergenic -5805 ENSMUSG00000086042.1 ENSMUSG00000086042 ENSMUST00000123606 Gm12670 lincRNA Interval_163806 chr9 26517590 26517859 + 0 NA Intergenic Intergenic 32229 ENSMUSG00000111066.1 ENSMUSG00000111066 ENSMUST00000216806 Gm30313 lincRNA Interval_64210 chr16 9217708 9217964 + 0 NA Intergenic Intergenic 59066 ENSMUSG00000116123.1 ENSMUSG00000116123 ENSMUST00000229655 Gm49451 lincRNA Interval_91491 chr2 39393630 39394033 + 0 NA Intergenic Intergenic -1582 ENSMUSG00000083401.1 ENSMUSG00000083401 ENSMUST00000120391 Gm13506 unprocessed_pseudogene Interval_111203 chr4 14807468 14808197 + 0 NA Intergenic Intergenic 18755 ENSMUSG00000040550.17 ENSMUSG00000040550 ENSMUST00000151012 Otud6b protein_coding Interval_42516 chr13 14369309 14369901 + 0 NA intron (ENSMUSG00000021301.9, intron 4 of 7) protein_coding-intron (ENSMUSG00000021301.9, intron 4 of 28) 9968 ENSMUSG00000113981.1 ENSMUSG00000113981 ENSMUST00000222578 Gm47011 TEC Interval_140553 chr6 119472166 119472610 + 0 NA intron (ENSMUSG00000030170.14, intron 1 of 4) protein_coding-intron (ENSMUSG00000030170.14, intron 1 of 4) -7280 ENSMUSG00000030019.6 ENSMUSG00000030019 ENSMUST00000032094 Fbxl14 protein_coding Interval_166210 chr9 57516800 57517343 + 0 NA Intergenic Intergenic -4262 ENSMUSG00000000088.7 ENSMUSG00000000088 ENSMUST00000214154 Cox5a protein_coding Interval_148867 chr7 89477549 89478049 + 0 NA Intergenic Intergenic -32208 ENSMUSG00000030623.4 ENSMUSG00000030623 ENSMUST00000208814 Prss23os antisense Interval_63735 chr15 103155738 103157533 + 0 NA exon (ENSMUSG00000036061.10, exon 2 of 2) protein_coding-exon (ENSMUSG00000036061.10, exon 2 of 2) 6683 ENSMUSG00000036061.10 ENSMUSG00000036061 ENSMUST00000230529 Smug1 protein_coding Interval_90647 chr2 31667486 31667748 + 0 NA Intergenic Intergenic 7147 ENSMUSG00000083143.2 ENSMUSG00000083143 ENSMUST00000122301 Gm13424 processed_pseudogene Interval_39607 chr12 91519574 91520225 + 0 NA intron (ENSMUSG00000020963.15, intron 9 of 10) protein_coding-intron (ENSMUSG00000020963.15, intron 8 of 8) 37846 ENSMUSG00000099750.1 ENSMUSG00000099750 ENSMUST00000188341 Gm18827 processed_pseudogene Interval_99787 chr2 164906026 164906335 + 0 NA intron (ENSMUSG00000039834.17, intron 6 of 26) protein_coding-intron (ENSMUSG00000039834.17, intron 6 of 27) 5577 ENSMUSG00000039834.17 ENSMUSG00000039834 ENSMUST00000139247 Zfp335 protein_coding Interval_114409 chr4 75423329 75423671 + 0 NA Intergenic Intergenic 42740 ENSMUSG00000084026.1 ENSMUSG00000084026 ENSMUST00000120554 Gm11259 processed_pseudogene Interval_106510 chr3 96788349 96788698 + 0 NA intron (ENSMUSG00000028098.13, intron 8 of 9) protein_coding-intron (ENSMUSG00000028098.13, intron 7 of 8) 4198 ENSMUSG00000105976.1 ENSMUSG00000105976 ENSMUST00000197286 Gm42782 TEC Interval_20414 chr10 117411032 117412490 + 0 NA intron (ENSMUSG00000112796.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000112796.1, intron 1 of 1) 2143 ENSMUSG00000112796.1 ENSMUSG00000112796 ENSMUST00000220040 Gm40770 lincRNA Interval_1142 chr1 16092797 16093862 + 0 NA promoter-TSS (ENSMUSG00000067795.13) protein_coding-promoter-TSS (ENSMUSG00000067795.13) -4 ENSMUSG00000067795.13 ENSMUSG00000067795 ENSMUST00000151004 4930444P10Rik protein_coding Interval_9711 chr1 161206567 161206898 + 0 NA intron (ENSMUSG00000102817.2, intron 11 of 25) transcribed_unprocessed_pseudogene-intron (ENSMUSG00000102817.2, intron 11 of 25) 5923 ENSMUSG00000102817.2 ENSMUSG00000102817 ENSMUST00000212885 Gm6185 transcribed_unprocessed_pseudogene Interval_148592 chr7 82896679 82897166 + 0 NA Intergenic Intergenic 29589 ENSMUSG00000057706.7 ENSMUSG00000057706 ENSMUST00000082237 Mex3b protein_coding Interval_69876 chr16 97804716 97805593 + 0 NA intron (ENSMUSG00000014039.18, intron 17 of 22) protein_coding-intron (ENSMUSG00000014039.18, intron 18 of 23) 4026 ENSMUSG00000116863.1 ENSMUSG00000116863 ENSMUST00000231602 Gm49592 processed_pseudogene Interval_35805 chr12 30090727 30091799 + 0 NA TTS (ENSMUSG00000020673.14) protein_coding-TTS (ENSMUSG00000020673.14) 31606 ENSMUSG00000085472.1 ENSMUSG00000085472 ENSMUST00000138626 Gm15691 antisense Interval_151046 chr7 118157683 118158145 + 0 NA exon (ENSMUSG00000030655.15, exon 1 of 1) protein_coding-exon (ENSMUSG00000030655.15, exon 1 of 1) 4434 ENSMUSG00000065874.1 ENSMUSG00000065874 ENSMUST00000083940 Gm25683 snoRNA Interval_42853 chr13 20432880 20434417 + 0 NA intron (ENSMUSG00000041112.17, intron 15 of 21) protein_coding-intron (ENSMUSG00000041112.17, intron 15 of 21) 39842 ENSMUSG00000113313.1 ENSMUSG00000113313 ENSMUST00000221484 Gm32036 antisense Interval_130319 chr5 125647873 125648146 + 0 NA intron (ENSMUSG00000070498.3, intron 2 of 2) protein_coding-intron (ENSMUSG00000070498.3, intron 3 of 8) 116235 ENSMUSG00000070498.3 ENSMUSG00000070498 ENSMUST00000184422 Tmem132b protein_coding Interval_70942 chr17 16468294 16468669 + 0 NA Intergenic Intergenic -88765 ENSMUSG00000116757.1 ENSMUSG00000116757 ENSMUST00000231695 Gm4786 processed_pseudogene Interval_118334 chr4 130336724 130337739 + 0 NA intron (ENSMUSG00000028772.19, intron 2 of 5) protein_coding-intron (ENSMUSG00000028772.19, intron 1 of 2) 22685 ENSMUSG00000028772.19 ENSMUSG00000028772 ENSMUST00000167964 Zcchc17 protein_coding Interval_131482 chr5 137489603 137489810 + 0 NA intron (ENSMUSG00000029711.13, intron 1 of 5) protein_coding-intron (ENSMUSG00000029711.13, intron 1 of 5) -3890 ENSMUSG00000029711.13 ENSMUSG00000029711 ENSMUST00000111039 Epo protein_coding Interval_109328 chr3 139005828 139006526 + 0 NA intron (ENSMUSG00000028149.12, intron 4 of 14) protein_coding-intron (ENSMUSG00000028149.12, intron 4 of 13) -28096 ENSMUSG00000104724.1 ENSMUSG00000104724 ENSMUST00000198292 Gm43162 TEC Interval_148283 chr7 80280357 80280711 + 0 NA intron (ENSMUSG00000030534.13, intron 6 of 22) protein_coding-intron (ENSMUSG00000030534.13, intron 6 of 22) -9474 ENSMUSG00000030534.13 ENSMUSG00000030534 ENSMUST00000135470 Vps33b protein_coding Interval_25458 chr11 48715859 48716218 + 0 NA Intergenic Intergenic 19523 ENSMUSG00000083460.1 ENSMUSG00000083460 ENSMUST00000118655 Gm12182 processed_pseudogene Interval_44012 chr13 39516058 39516728 + 0 NA Intergenic Intergenic 16710 ENSMUSG00000114221.1 ENSMUSG00000114221 ENSMUST00000224895 Gm47351 lincRNA Interval_35934 chr12 32138364 32138645 + 0 NA Intergenic Intergenic -14802 ENSMUSG00000112071.1 ENSMUSG00000112071 ENSMUST00000218836 5430401H09Rik lincRNA Interval_33139 chr11 114699425 114699902 + 0 NA intron (ENSMUSG00000034714.9, intron 4 of 13) protein_coding-intron (ENSMUSG00000034714.9, intron 4 of 13) 24147 ENSMUSG00000034714.9 ENSMUSG00000034714 ENSMUST00000141111 Ttyh2 protein_coding Interval_152162 chr7 130289495 130289758 + 0 NA intron (ENSMUSG00000030849.18, intron 2 of 6) protein_coding-intron (ENSMUSG00000030849.18, intron 2 of 6) -23371 ENSMUSG00000030849.18 ENSMUSG00000030849 ENSMUST00000208844 Fgfr2 protein_coding Interval_70884 chr17 15590796 15591670 + 0 NA Intergenic Intergenic -6695 ENSMUSG00000116550.1 ENSMUSG00000116550 ENSMUST00000232156 Gm3507 processed_pseudogene Interval_110005 chr3 152428471 152429088 + 0 NA TTS (ENSMUSG00000039068.16) protein_coding-TTS (ENSMUSG00000039068.16) 32647 ENSMUSG00000039068.16 ENSMUSG00000039068 ENSMUST00000135044 Zzz3 protein_coding Interval_168776 chr9 86933585 86933910 + 0 NA Intergenic Intergenic -53308 ENSMUSG00000033419.16 ENSMUSG00000033419 ENSMUST00000191290 Snap91 protein_coding Interval_117362 chr4 123239276 123240286 + 0 NA promoter-TSS (ENSMUSG00000032744.4) protein_coding-promoter-TSS (ENSMUSG00000032744.4) 5928 ENSMUSG00000032744.4 ENSMUSG00000032744 ENSMUST00000127172 Heyl protein_coding Interval_28418 chr11 75746166 75747845 + 0 NA intron (ENSMUSG00000020849.13, intron 1 of 3) protein_coding-intron (ENSMUSG00000020849.13, intron 1 of 5) -4599 ENSMUSG00000020849.13 ENSMUSG00000020849 ENSMUST00000155057 Ywhae protein_coding Interval_105983 chr3 90446074 90447421 + 0 NA Intergenic Intergenic -4836 ENSMUSG00000087411.1 ENSMUSG00000087411 ENSMUST00000134250 Gm16048 antisense Interval_7847 chr1 134106689 134107225 + 0 NA Intergenic Intergenic -2411 ENSMUSG00000073559.2 ENSMUSG00000073559 ENSMUST00000097570 Gm8618 processed_pseudogene Interval_84832 chr19 17282049 17282269 + 0 NA Intergenic Intergenic -15821 ENSMUSG00000117946.1 ENSMUSG00000117946 ENSMUST00000237419 Gm50280 processed_pseudogene Interval_50334 chr14 11892225 11892802 + 0 NA intron (ENSMUSG00000021745.14, intron 2 of 3) protein_coding-intron (ENSMUSG00000021745.14, intron 2 of 29) -12166 ENSMUSG00000114267.1 ENSMUSG00000114267 ENSMUST00000225771 Gm48600 TEC Interval_18724 chr10 89703002 89703257 + 0 NA Intergenic Intergenic 16758 ENSMUSG00000097383.1 ENSMUSG00000097383 ENSMUST00000181598 1500026H17Rik bidirectional_promoter_lncRNA Interval_64730 chr16 14556966 14558262 + 0 NA Intergenic Intergenic -22607 ENSMUSG00000075395.11 ENSMUSG00000075395 ENSMUST00000100165 A630010A05Rik protein_coding Interval_54510 chr14 70350723 70352621 + 0 NA promoter-TSS (ENSMUSG00000022094.15) protein_coding-promoter-TSS (ENSMUSG00000022094.15) -8515 ENSMUSG00000058745.4 ENSMUSG00000058745 ENSMUST00000078149 Gm9174 processed_pseudogene Interval_173844 chrX 105912529 105912730 + 0 NA intron (ENSMUSG00000031229.16, intron 1 of 2) protein_coding-intron (ENSMUSG00000031229.16, intron 1 of 5) -37324 ENSMUSG00000031229.16 ENSMUSG00000031229 ENSMUST00000126345 Atrx protein_coding Interval_76099 chr17 74961459 74962062 + 0 NA Intergenic Intergenic 11369 ENSMUSG00000117342.1 ENSMUSG00000117342 ENSMUST00000234138 Gm31818 processed_transcript Interval_29293 chr11 82739149 82739455 + 0 NA intron (ENSMUSG00000020698.11, intron 8 of 13) protein_coding-intron (ENSMUSG00000020698.11, intron 8 of 13) 6903 ENSMUSG00000081828.1 ENSMUSG00000081828 ENSMUST00000120047 Gm11420 processed_pseudogene Interval_58899 chr15 39829716 39830266 + 0 NA intron (ENSMUSG00000022304.13, intron 4 of 9) protein_coding-intron (ENSMUSG00000022304.13, intron 4 of 9) 32946 ENSMUSG00000087695.1 ENSMUSG00000087695 ENSMUST00000147378 Gm16291 antisense Interval_141135 chr6 125191329 125192767 + 0 NA promoter-TSS (ENSMUSG00000030335.6) protein_coding-promoter-TSS (ENSMUSG00000030335.6) -169 ENSMUSG00000030335.6 ENSMUSG00000030335 ENSMUST00000144380 Mrpl51 protein_coding Interval_159882 chr8 104601384 104603340 + 0 NA intron (ENSMUSG00000031881.6, intron 17 of 17) protein_coding-intron (ENSMUSG00000031881.6, intron 1 of 1) 10911 ENSMUSG00000048371.8 ENSMUSG00000048371 ENSMUST00000059588 Pdp2 protein_coding Interval_147556 chr7 68258146 68260153 + 0 NA intron (ENSMUSG00000030553.3, intron 1 of 3) protein_coding-intron (ENSMUSG00000030553.3, intron 1 of 3) 5084 ENSMUSG00000030553.3 ENSMUSG00000030553 ENSMUST00000207874 Pgpep1l protein_coding Interval_132489 chr5 145280320 145281077 + 0 NA intron (ENSMUSG00000070420.4, intron 1 of 2) protein_coding-intron (ENSMUSG00000070420.4, intron 1 of 2) 198 ENSMUSG00000070420.4 ENSMUSG00000070420 ENSMUST00000094116 Zscan25 protein_coding Interval_75916 chr17 73031676 73032905 + 0 NA Intergenic Intergenic -3212 ENSMUSG00000117096.1 ENSMUSG00000117096 ENSMUST00000233236 Gm30420 lincRNA Interval_54213 chr14 66312067 66312431 + 0 NA TTS (ENSMUSG00000022043.19) protein_coding-TTS (ENSMUSG00000022043.19) -15120 ENSMUSG00000085984.7 ENSMUSG00000085984 ENSMUST00000143392 1700001G11Rik processed_transcript Interval_138013 chr6 84134978 84135356 + 0 NA intron (ENSMUSG00000033788.15, intron 32 of 55) protein_coding-intron (ENSMUSG00000033788.15, intron 32 of 54) -28160 ENSMUSG00000087001.2 ENSMUSG00000087001 ENSMUST00000137673 Gm15475 antisense Interval_1980 chr1 35443224 35443494 + 0 NA Intergenic Intergenic 207938 ENSMUSG00000104417.1 ENSMUSG00000104417 ENSMUST00000195168 Gm37068 lincRNA Interval_10358 chr1 169934147 169934724 + 0 NA promoter-TSS (ENSMUSG00000089990.1) processed_transcript-promoter-TSS (ENSMUSG00000089990.1) -187 ENSMUSG00000089990.1 ENSMUSG00000089990 ENSMUST00000159701 Gm15852 processed_transcript Interval_145259 chr7 31017197 31017418 + 0 NA Intergenic Intergenic 20631 ENSMUSG00000009687.14 ENSMUSG00000009687 ENSMUST00000161259 Fxyd5 protein_coding Interval_47293 chr13 80819566 80820458 + 0 NA Intergenic Intergenic 65512 ENSMUSG00000089827.1 ENSMUSG00000089827 ENSMUST00000161006 1700023H06Rik processed_transcript Interval_6911 chr1 120602101 120604081 + 0 NA exon (ENSMUSG00000058665.8, exon 1 of 2) protein_coding-exon (ENSMUSG00000058665.8, exon 1 of 2) 673 ENSMUSG00000058665.8 ENSMUSG00000058665 ENSMUST00000079721 En1 protein_coding Interval_24086 chr11 30117461 30118934 + 0 NA intron (ENSMUSG00000020315.18, intron 25 of 30) protein_coding-intron (ENSMUSG00000020315.18, intron 25 of 35) 11803 ENSMUSG00000101872.1 ENSMUSG00000101872 ENSMUST00000186216 Gm29237 antisense Interval_101712 chr3 9076611 9077050 + 0 NA Intergenic Intergenic 4063 ENSMUSG00000103011.1 ENSMUSG00000103011 ENSMUST00000193160 Gm8860 processed_pseudogene Interval_85979 chr19 34547978 34548226 + 0 NA Intergenic Intergenic -1162 ENSMUSG00000118048.1 ENSMUSG00000118048 ENSMUST00000237722 Gm50257 processed_pseudogene Interval_57536 chr15 12181945 12182227 + 0 NA TTS (ENSMUSG00000115017.1) processed_pseudogene-TTS (ENSMUSG00000115017.1) 939 ENSMUSG00000115017.1 ENSMUSG00000115017 ENSMUST00000228426 Gm2573 processed_pseudogene Interval_1137 chr1 16026598 16026884 + 0 NA Intergenic Intergenic -26594 ENSMUSG00000100652.1 ENSMUSG00000100652 ENSMUST00000185778 Gm7634 processed_pseudogene Interval_107916 chr3 116768765 116768976 + 0 NA exon (ENSMUSG00000033400.14, exon 25 of 34) protein_coding-exon (ENSMUSG00000033400.14, exon 25 of 34) 38547 ENSMUSG00000033400.14 ENSMUSG00000033400 ENSMUST00000159670 Agl protein_coding Interval_172112 chrX 7673924 7675263 + 0 NA TTS (ENSMUSG00000031147.8) protein_coding-TTS (ENSMUSG00000031147.8) -3280 ENSMUSG00000031146.6 ENSMUSG00000031146 ENSMUST00000143854 Plp2 protein_coding Interval_33261 chr11 115526309 115526590 + 0 NA intron (ENSMUSG00000020738.16, intron 2 of 2) protein_coding-intron (ENSMUSG00000020738.16, intron 3 of 3) 9827 ENSMUSG00000020738.16 ENSMUSG00000020738 ENSMUST00000050672 Sumo2 protein_coding Interval_157231 chr8 68270184 68272251 + 0 NA Intergenic Intergenic -11090 ENSMUSG00000053886.4 ENSMUSG00000053886 ENSMUST00000212166 Sh2d4a protein_coding Interval_50746 chr14 18893095 18894408 + 0 NA promoter-TSS (ENSMUSG00000058317.12) protein_coding-promoter-TSS (ENSMUSG00000058317.12) -106 ENSMUSG00000058317.12 ENSMUSG00000058317 ENSMUST00000144873 Ube2e2 protein_coding Interval_102047 chr3 16115686 16115859 + 0 NA exon (ENSMUSG00000088874.1, exon 1 of 1) ribozyme-exon (ENSMUSG00000088874.1, exon 1 of 1) 171 ENSMUSG00000088874.1 ENSMUSG00000088874 ENSMUST00000158249 Gm25863 ribozyme Interval_32390 chr11 107309879 107311236 + 0 NA intron (ENSMUSG00000040430.18, intron 4 of 7) protein_coding-intron (ENSMUSG00000040430.18, intron 3 of 7) -20151 ENSMUSG00000081995.1 ENSMUSG00000081995 ENSMUST00000119399 Gm11719 processed_pseudogene Interval_115721 chr4 103011864 103012311 + 0 NA promoter-TSS (ENSMUSG00000085041.1) antisense-promoter-TSS (ENSMUSG00000085041.1) -122 ENSMUSG00000085041.1 ENSMUSG00000085041 ENSMUST00000148892 BB031773 antisense Interval_17680 chr10 79116456 79116798 + 0 NA Intergenic Intergenic -19102 ENSMUSG00000060301.6 ENSMUSG00000060301 ENSMUST00000219729 2610008E11Rik protein_coding Interval_19864 chr10 110705252 110706340 + 0 NA Intergenic Intergenic -39669 ENSMUSG00000020185.16 ENSMUSG00000020185 ENSMUST00000174593 E2f7 protein_coding Interval_105155 chr3 82902979 82904749 + 0 NA promoter-TSS (ENSMUSG00000086273.7) antisense-promoter-TSS (ENSMUSG00000086273.7) 109 ENSMUSG00000028003.6 ENSMUSG00000028003 ENSMUST00000029632 Lrat protein_coding Interval_30400 chr11 94143704 94144129 + 0 NA intron (ENSMUSG00000086003.7, intron 2 of 3) processed_transcript-intron (ENSMUSG00000086003.7, intron 2 of 5) 10414 ENSMUSG00000086003.7 ENSMUSG00000086003 ENSMUST00000125406 B230206L02Rik processed_transcript Interval_44011 chr13 39450537 39451040 + 0 NA Intergenic Intergenic 10223 ENSMUSG00000114512.1 ENSMUSG00000114512 ENSMUST00000226065 Gm47348 lincRNA Interval_98782 chr2 154905986 154906947 + 0 NA intron (ENSMUSG00000027596.10, intron 1 of 4) protein_coding-intron (ENSMUSG00000027596.10, intron 1 of 4) -13684 ENSMUSG00000074656.12 ENSMUSG00000074656 ENSMUST00000135524 Eif2s2 protein_coding Interval_19547 chr10 102959524 102959966 + 0 NA Intergenic Intergenic 69371 ENSMUSG00000036602.14 ENSMUSG00000036602 ENSMUST00000218508 Alx1 protein_coding Interval_170069 chr9 104205181 104205538 + 0 NA intron (ENSMUSG00000032560.14, intron 22 of 55) protein_coding-intron (ENSMUSG00000032560.14, intron 22 of 55) -18424 ENSMUSG00000032560.14 ENSMUSG00000032560 ENSMUST00000189299 Dnajc13 protein_coding Interval_157444 chr8 70408441 70408733 + 0 NA intron (ENSMUSG00000003575.13, intron 2 of 2) protein_coding-intron (ENSMUSG00000003575.13, intron 2 of 13) 22698 ENSMUSG00000003575.13 ENSMUSG00000003575 ENSMUST00000153632 Crtc1 protein_coding Interval_132058 chr5 142529621 142530670 + 0 NA promoter-TSS (ENSMUSG00000074817.2) protein_coding-promoter-TSS (ENSMUSG00000074817.2) -69 ENSMUSG00000074817.2 ENSMUSG00000074817 ENSMUST00000099400 Papolb protein_coding Interval_116061 chr4 107336428 107336816 + 0 NA TTS (ENSMUSG00000057375.13) protein_coding-TTS (ENSMUSG00000057375.13) -8123 ENSMUSG00000082279.1 ENSMUSG00000082279 ENSMUST00000121383 Gm12870 processed_pseudogene Interval_66043 chr16 31169202 31170740 + 0 NA intron (ENSMUSG00000049076.12, intron 1 of 23) protein_coding-intron (ENSMUSG00000049076.12, intron 1 of 21) 12101 ENSMUSG00000116943.1 ENSMUSG00000116943 ENSMUST00000231868 Gm18237 processed_pseudogene Interval_75305 chr17 65794155 65795283 + 0 NA intron (ENSMUSG00000061950.17, intron 1 of 6) protein_coding-intron (ENSMUSG00000061950.17, intron 2 of 19) -22079 ENSMUSG00000056515.9 ENSMUSG00000056515 ENSMUST00000233258 Rab31 protein_coding Interval_95495 chr2 110209151 110209437 + 0 NA exon (ENSMUSG00000082512.1, exon 1 of 1) processed_pseudogene-exon (ENSMUSG00000082512.1, exon 1 of 1) 871 ENSMUSG00000082512.1 ENSMUSG00000082512 ENSMUST00000121000 Gm13937 processed_pseudogene Interval_126828 chr5 93266847 93268573 + 0 NA promoter-TSS (ENSMUSG00000029385.14) protein_coding-promoter-TSS (ENSMUSG00000029385.14) 109 ENSMUSG00000029385.14 ENSMUSG00000029385 ENSMUST00000149329 Ccng2 protein_coding Interval_97877 chr2 144691924 144692996 + 0 NA intron (ENSMUSG00000027430.12, intron 2 of 2) protein_coding-intron (ENSMUSG00000027430.12, intron 4 of 5) -63869 ENSMUSG00000084306.1 ENSMUSG00000084306 ENSMUST00000117385 Gm11743 processed_pseudogene Interval_64431 chr16 11316413 11317537 + 0 NA intron (ENSMUSG00000022496.5, intron 2 of 2) protein_coding-intron (ENSMUSG00000022496.5, intron 2 of 2) 3163 ENSMUSG00000022496.5 ENSMUSG00000022496 ENSMUST00000023140 Tnfrsf17 protein_coding Interval_171673 chr9 120064966 120066185 + 0 NA intron (ENSMUSG00000052336.7, intron 2 of 2) protein_coding-intron (ENSMUSG00000052336.7, intron 1 of 1) -3421 ENSMUSG00000111792.1 ENSMUSG00000111792 ENSMUST00000216918 Gm33858 antisense Interval_130058 chr5 123996312 123996807 + 0 NA promoter-TSS (ENSMUSG00000098454.1) miRNA-promoter-TSS (ENSMUSG00000098454.1) -293 ENSMUSG00000098454.1 ENSMUSG00000098454 ENSMUST00000185154 Mir7032 miRNA Interval_167307 chr9 67191910 67192718 + 0 NA intron (ENSMUSG00000111556.1, intron 2 of 2) lincRNA-intron (ENSMUSG00000111556.1, intron 2 of 2) 44412 ENSMUSG00000076379.2 ENSMUSG00000076379 ENSMUST00000102424 Mir190a miRNA Interval_80816 chr18 47492761 47493747 + 0 NA exon (ENSMUSG00000118180.1, exon 2 of 2) lincRNA-exon (ENSMUSG00000118180.1, exon 2 of 2) 15750 ENSMUSG00000118180.1 ENSMUSG00000118180 ENSMUST00000236646 Gm50223 lincRNA Interval_112444 chr4 41313905 41315500 + 0 NA exon (ENSMUSG00000028436.8, exon 1 of 9) protein_coding-exon (ENSMUSG00000028436.8, exon 1 of 9) 187 ENSMUSG00000028436.8 ENSMUSG00000028436 ENSMUST00000030145 Dcaf12 protein_coding Interval_78589 chr18 14962418 14962627 + 0 NA Intergenic Intergenic -26473 ENSMUSG00000117450.1 ENSMUSG00000117450 ENSMUST00000234445 4933424G05Rik antisense Interval_44719 chr13 47739603 47740254 + 0 NA Intergenic Intergenic 72378 ENSMUSG00000114509.1 ENSMUSG00000114509 ENSMUST00000223996 4930471G24Rik lincRNA Interval_77193 chr17 87248875 87249593 + 0 NA Intergenic Intergenic 16646 ENSMUSG00000024150.12 ENSMUSG00000024150 ENSMUST00000139258 Mcfd2 protein_coding Interval_113828 chr4 59181930 59182831 + 0 NA Intergenic Intergenic -19224 ENSMUSG00000082978.1 ENSMUSG00000082978 ENSMUST00000118446 Rpsa-ps11 processed_pseudogene Interval_122276 chr5 20898905 20899334 + 0 NA intron (ENSMUSG00000039968.9, intron 6 of 6) protein_coding-intron (ENSMUSG00000039968.9, intron 6 of 7) 16612 ENSMUSG00000045435.9 ENSMUSG00000045435 ENSMUST00000196723 Tmem60 protein_coding Interval_45315 chr13 54282175 54283128 + 0 NA Intergenic Intergenic -19907 ENSMUSG00000112941.1 ENSMUSG00000112941 ENSMUST00000223430 Gm48623 lincRNA Interval_34803 chr12 11337934 11338216 + 0 NA intron (ENSMUSG00000054459.8, intron 2 of 3) protein_coding-intron (ENSMUSG00000054459.8, intron 2 of 3) 38188 ENSMUSG00000098879.1 ENSMUSG00000098879 ENSMUST00000184262 Mir7675 miRNA Interval_75416 chr17 66448306 66450240 + 0 NA promoter-TSS (ENSMUSG00000052105.17) protein_coding-promoter-TSS (ENSMUSG00000052105.17) -581 ENSMUSG00000117003.1 ENSMUSG00000117003 ENSMUST00000233518 Gm49937 bidirectional_promoter_lncRNA Interval_118753 chr4 133535667 133537505 + 0 NA promoter-TSS (ENSMUSG00000028851.6) protein_coding-promoter-TSS (ENSMUSG00000028851.6) -659 ENSMUSG00000028851.6 ENSMUSG00000028851 ENSMUST00000148612 Nudc protein_coding Interval_5393 chr1 88459034 88460008 + 0 NA promoter-TSS (ENSMUSG00000100908.1) lincRNA-promoter-TSS (ENSMUSG00000100908.1) -162 ENSMUSG00000100908.1 ENSMUSG00000100908 ENSMUST00000186556 Gm28888 lincRNA Interval_112864 chr4 45618627 45619431 + 0 NA Intergenic Intergenic -20715 ENSMUSG00000085980.2 ENSMUSG00000085980 ENSMUST00000211200 Gm12408 lincRNA Interval_110266 chr3 155151835 155152119 + 0 NA intron (ENSMUSG00000028182.14, intron 5 of 6) protein_coding-intron (ENSMUSG00000028182.14, intron 5 of 7) 57112 ENSMUSG00000104122.1 ENSMUSG00000104122 ENSMUST00000194899 Gm37482 TEC Interval_107536 chr3 108351839 108352353 + 0 NA intron (ENSMUSG00000068747.14, intron 16 of 20) protein_coding-intron (ENSMUSG00000068747.14, intron 16 of 19) -9455 ENSMUSG00000078601.4 ENSMUSG00000078601 ENSMUST00000125412 Gm12525 lincRNA Interval_9854 chr1 163189122 163189400 + 0 NA Intergenic Intergenic 71034 ENSMUSG00000089174.1 ENSMUSG00000089174 ENSMUST00000158549 Gm22434 snoRNA Interval_61063 chr15 79017411 79020035 + 0 NA intron (ENSMUSG00000115867.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000115867.1, intron 1 of 2) 4806 ENSMUSG00000115867.1 ENSMUSG00000115867 ENSMUST00000231015 Gm17753 lincRNA Interval_64378 chr16 10950287 10951908 + 0 NA Intergenic Intergenic -12733 ENSMUSG00000117309.1 ENSMUSG00000117309 ENSMUST00000233200 Gm49960 transcribed_unitary_pseudogene Interval_23460 chr11 22754790 22755805 + 0 NA Intergenic Intergenic 4728 ENSMUSG00000084081.3 ENSMUSG00000084081 ENSMUST00000117244 Gm12057 processed_pseudogene Interval_21902 chr11 5074826 5077559 + 0 NA intron (ENSMUSG00000009079.16, intron 1 of 2) protein_coding-intron (ENSMUSG00000009079.16, intron 9 of 14) -11341 ENSMUSG00000034201.13 ENSMUSG00000034201 ENSMUST00000151936 Gas2l1 protein_coding Interval_5860 chr1 92727605 92728075 + 0 NA Intergenic Intergenic -10638 ENSMUSG00000100546.1 ENSMUSG00000100546 ENSMUST00000188188 Gm29483 lincRNA Interval_140963 chr6 123201882 123202206 + 0 NA intron (ENSMUSG00000067767.5, intron 4 of 5) protein_coding-intron (ENSMUSG00000067767.5, intron 4 of 5) -6331 ENSMUSG00000089183.1 ENSMUSG00000089183 ENSMUST00000158558 Gm22946 snRNA Interval_135632 chr6 41926785 41927051 + 0 NA Intergenic Intergenic -24712 ENSMUSG00000029865.4 ENSMUSG00000029865 ENSMUST00000031898 Sval1 protein_coding Interval_119295 chr4 136702218 136703543 + 0 NA intron (ENSMUSG00000028664.14, intron 3 of 15) protein_coding-intron (ENSMUSG00000028664.14, intron 3 of 15) -8840 ENSMUSG00000028664.14 ENSMUSG00000028664 ENSMUST00000144573 Ephb2 protein_coding Interval_166308 chr9 58226025 58226842 + 0 NA intron (ENSMUSG00000036986.16, intron 7 of 7) protein_coding-intron (ENSMUSG00000036986.16, intron 7 of 8) 3694 ENSMUSG00000036986.16 ENSMUSG00000036986 ENSMUST00000124982 Pml protein_coding Interval_65234 chr16 20730058 20730915 + 0 NA promoter-TSS (ENSMUSG00000022847.15) protein_coding-promoter-TSS (ENSMUSG00000022847.15) 141 ENSMUSG00000022847.15 ENSMUSG00000022847 ENSMUST00000231826 Thpo protein_coding Interval_92613 chr2 61492187 61492667 + 0 NA promoter-TSS (ENSMUSG00000088340.1) snoRNA-promoter-TSS (ENSMUSG00000088340.1) -339 ENSMUSG00000088340.1 ENSMUSG00000088340 ENSMUST00000157715 Gm22338 snoRNA Interval_27231 chr11 64504424 64504808 + 0 NA intron (ENSMUSG00000047759.6, intron 1 of 1) protein_coding-intron (ENSMUSG00000047759.6, intron 1 of 1) 69284 ENSMUSG00000047759.6 ENSMUSG00000047759 ENSMUST00000058652 Hs3st3a1 protein_coding Interval_54747 chr14 74644944 74645209 + 0 NA exon (ENSMUSG00000034997.5, exon 2 of 3) protein_coding-exon (ENSMUSG00000034997.5, exon 2 of 3) 4236 ENSMUSG00000034997.5 ENSMUSG00000034997 ENSMUST00000036653 Htr2a protein_coding Interval_85281 chr19 24327022 24327266 + 0 NA intron (ENSMUSG00000024867.14, intron 12 of 13) protein_coding-intron (ENSMUSG00000024867.14, intron 13 of 14) 37428 ENSMUSG00000082107.1 ENSMUSG00000082107 ENSMUST00000118970 Gm16216 processed_pseudogene Interval_57894 chr15 25092392 25092726 + 0 NA Intergenic Intergenic 35845 ENSMUSG00000115174.1 ENSMUSG00000115174 ENSMUST00000226274 Gm35996 lincRNA Interval_63063 chr15 98897677 98898787 + 0 NA exon (ENSMUSG00000023000.5, exon 1 of 3) protein_coding-exon (ENSMUSG00000023000.5, exon 1 of 3) 274 ENSMUSG00000023000.5 ENSMUSG00000023000 ENSMUST00000229775 Dhh protein_coding Interval_128190 chr5 111607105 111607696 + 0 NA Intergenic Intergenic 13784 ENSMUSG00000104833.1 ENSMUSG00000104833 ENSMUST00000198964 Gm42489 lincRNA Interval_55294 chr14 80845698 80846140 + 0 NA Intergenic Intergenic 11587 ENSMUSG00000115346.1 ENSMUSG00000115346 ENSMUST00000228193 Gm19120 processed_pseudogene Interval_119048 chr4 135225754 135226738 + 0 NA intron (ENSMUSG00000037242.8, intron 2 of 2) protein_coding-intron (ENSMUSG00000037242.8, intron 2 of 5) 46568 ENSMUSG00000037242.8 ENSMUSG00000037242 ENSMUST00000143370 Clic4 protein_coding Interval_10807 chr1 175346598 175347115 + 0 NA intron (ENSMUSG00000026527.13, intron 2 of 17) protein_coding-intron (ENSMUSG00000026527.13, intron 1 of 15) 33820 ENSMUSG00000104343.1 ENSMUSG00000104343 ENSMUST00000194955 5730408A14Rik TEC Interval_113738 chr4 57934026 57935000 + 0 NA Intergenic Intergenic -18216 ENSMUSG00000052117.5 ENSMUSG00000052117 ENSMUST00000063816 D630039A03Rik protein_coding Interval_36185 chr12 38219767 38220213 + 0 NA intron (ENSMUSG00000036095.11, intron 18 of 22) protein_coding-intron (ENSMUSG00000036095.11, intron 18 of 24) 130088 ENSMUSG00000113941.1 ENSMUSG00000113941 ENSMUST00000222392 Gm35755 processed_pseudogene Interval_142275 chr6 140348121 140349171 + 0 NA Intergenic Intergenic 29016 ENSMUSG00000065882.1 ENSMUSG00000065882 ENSMUST00000083948 n-R5s168 rRNA Interval_139925 chr6 112781679 112782120 + 0 NA intron (ENSMUSG00000030257.16, intron 4 of 21) protein_coding-intron (ENSMUSG00000030257.16, intron 4 of 9) 47560 ENSMUSG00000030257.16 ENSMUSG00000030257 ENSMUST00000143475 Srgap3 protein_coding Interval_72642 chr17 31269778 31271486 + 0 NA intron (ENSMUSG00000024033.10, intron 3 of 8) protein_coding-intron (ENSMUSG00000024033.10, intron 3 of 8) 6329 ENSMUSG00000024033.10 ENSMUSG00000024033 ENSMUST00000235144 Rsph1 protein_coding Interval_119687 chr4 139221116 139222367 + 0 NA intron (ENSMUSG00000028745.18, intron 1 of 3) protein_coding-intron (ENSMUSG00000028745.18, intron 1 of 8) 27630 ENSMUSG00000028745.18 ENSMUSG00000028745 ENSMUST00000132385 Capzb protein_coding Interval_68379 chr16 75193376 75193666 + 0 NA Intergenic Intergenic 46288 ENSMUSG00000116698.1 ENSMUSG00000116698 ENSMUST00000232159 Gm49676 processed_pseudogene Interval_45384 chr13 54797499 54797758 + 0 NA TTS (ENSMUSG00000025875.14) protein_coding-TTS (ENSMUSG00000025875.14) 7983 ENSMUSG00000025875.14 ENSMUSG00000025875 ENSMUST00000139574 Tspan17 protein_coding Interval_72107 chr17 28075928 28076112 + 0 NA TTS (ENSMUSG00000117120.1) processed_transcript-TTS (ENSMUSG00000117120.1) 657 ENSMUSG00000085521.4 ENSMUSG00000085521 ENSMUST00000134228 4930526A20Rik transcribed_processed_pseudogene Interval_45480 chr13 55369449 55369850 + 0 NA promoter-TSS (ENSMUSG00000052087.14) protein_coding-promoter-TSS (ENSMUSG00000052087.14) -7038 ENSMUSG00000021484.8 ENSMUSG00000021484 ENSMUST00000225366 Lman2 protein_coding Interval_37368 chr12 65566212 65566740 + 0 NA TTS (ENSMUSG00000077270.1) snoRNA-TTS (ENSMUSG00000077270.1) 386 ENSMUSG00000077270.1 ENSMUSG00000077270 ENSMUST00000104082 Gm22782 snoRNA Interval_85494 chr19 27482112 27482573 + 0 NA Intergenic Intergenic -30166 ENSMUSG00000118072.1 ENSMUSG00000118072 ENSMUST00000235994 Gm50101 processed_pseudogene Interval_82996 chr18 80249712 80250555 + 0 NA Intergenic Intergenic -3209 ENSMUSG00000034006.17 ENSMUSG00000034006 ENSMUST00000155039 Slc66a2 protein_coding Interval_75463 chr17 66736134 66736798 + 0 NA intron (ENSMUSG00000033278.10, intron 20 of 30) protein_coding-intron (ENSMUSG00000033278.10, intron 22 of 32) -2288 ENSMUSG00000114291.1 ENSMUSG00000114291 ENSMUST00000223962 Gm47471 antisense Interval_135544 chr6 40303239 40303702 + 0 NA Intergenic Intergenic -22038 ENSMUSG00000029916.11 ENSMUSG00000029916 ENSMUST00000201751 Agk protein_coding Interval_170034 chr9 103879439 103879692 + 0 NA Intergenic Intergenic -8444 ENSMUSG00000100266.2 ENSMUSG00000100266 ENSMUST00000187540 Gm5372 processed_pseudogene Interval_113221 chr4 50380098 50381008 + 0 NA Intergenic Intergenic 93807 ENSMUSG00000095394.1 ENSMUSG00000095394 ENSMUST00000104120 Gm25485 snoRNA Interval_174844 chrX 169593827 169594149 + 0 NA Intergenic Intergenic 101911 ENSMUSG00000065716.1 ENSMUSG00000065716 ENSMUST00000083782 Gm25651 snoRNA Interval_5183 chr1 86310675 86312003 + 0 NA Intergenic Intergenic -7280 ENSMUSG00000099644.1 ENSMUSG00000099644 ENSMUST00000187004 Gm28626 antisense Interval_35541 chr12 24632046 24632670 + 0 NA Intergenic Intergenic 6652 ENSMUSG00000066553.5 ENSMUSG00000066553 ENSMUST00000140065 Gm6969 processed_pseudogene Interval_99530 chr2 162991304 162991976 + 0 NA exon (ENSMUSG00000017868.16, exon 2 of 14) protein_coding-exon (ENSMUSG00000017868.16, exon 2 of 14) -6472 ENSMUSG00000017868.16 ENSMUSG00000017868 ENSMUST00000139053 Sgk2 protein_coding Interval_88613 chr2 6730318 6730798 + 0 NA intron (ENSMUSG00000002107.18, intron 2 of 13) protein_coding-intron (ENSMUSG00000002107.18, intron 3 of 15) 142039 ENSMUSG00000002107.18 ENSMUSG00000002107 ENSMUST00000182037 Celf2 protein_coding Interval_174820 chrX 167636662 167637082 + 0 NA intron (ENSMUSG00000049176.16, intron 3 of 17) protein_coding-intron (ENSMUSG00000049176.16, intron 2 of 16) -139389 ENSMUSG00000084378.1 ENSMUSG00000084378 ENSMUST00000119938 Gm15238 processed_pseudogene Interval_32379 chr11 107238460 107239471 + 0 NA intron (ENSMUSG00000040430.18, intron 6 of 7) protein_coding-intron (ENSMUSG00000040430.18, intron 5 of 7) 47871 ENSMUSG00000081360.1 ENSMUSG00000081360 ENSMUST00000119942 Gm11718 processed_pseudogene Interval_83356 chr18 84532194 84532411 + 0 NA intron (ENSMUSG00000048410.17, intron 2 of 2) protein_coding-intron (ENSMUSG00000048410.17, intron 2 of 2) -93443 ENSMUSG00000117676.1 ENSMUSG00000117676 ENSMUST00000236074 Gm50314 antisense Interval_143333 chr7 5540354 5540915 + 0 NA exon (ENSMUSG00000118298.1, exon 1 of 1) protein_coding-exon (ENSMUSG00000118298.1, exon 1 of 1) 6683 ENSMUSG00000118298.1 ENSMUSG00000118298 ENSMUST00000173782 Vmn1r60 protein_coding Interval_15206 chr10 43369515 43369705 + 0 NA intron (ENSMUSG00000038240.13, intron 3 of 7) protein_coding-intron (ENSMUSG00000038240.13, intron 3 of 7) 4310 ENSMUSG00000089839.1 ENSMUSG00000089839 ENSMUST00000160308 Rps19-ps11 processed_pseudogene Interval_13162 chr10 12687971 12688222 + 0 NA intron (ENSMUSG00000019820.11, intron 1 of 11) protein_coding-intron (ENSMUSG00000019820.11, intron 27 of 73) 766 ENSMUSG00000019820.11 ENSMUSG00000019820 ENSMUST00000219135 Utrn protein_coding Interval_93557 chr2 74142909 74143090 + 0 NA intron (ENSMUSG00000084791.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000084791.1, intron 1 of 2) 7242 ENSMUSG00000084791.1 ENSMUSG00000084791 ENSMUST00000132332 Gm13667 lincRNA Interval_78265 chr18 11039119 11041144 + 0 NA intron (ENSMUSG00000097222.2, intron 1 of 3) processed_transcript-intron (ENSMUSG00000097222.2, intron 1 of 3) 7506 ENSMUSG00000097222.2 ENSMUSG00000097222 ENSMUST00000181316 Gata6os processed_transcript Interval_115925 chr4 106322435 106323124 + 0 NA intron (ENSMUSG00000028514.15, intron 1 of 67) protein_coding-intron (ENSMUSG00000028514.15, intron 1 of 67) 6566 ENSMUSG00000028514.15 ENSMUSG00000028514 ENSMUST00000150521 Usp24 protein_coding Interval_152323 chr7 131756437 131757468 + 0 NA intron (ENSMUSG00000030849.18, intron 2 of 6) protein_coding-intron (ENSMUSG00000030849.18, intron 2 of 6) 29627 ENSMUSG00000108839.1 ENSMUSG00000108839 ENSMUST00000207793 Gm44547 TEC Interval_53420 chr14 57313510 57314178 + 0 NA intron (ENSMUSG00000021947.11, intron 2 of 3) protein_coding-intron (ENSMUSG00000021947.11, intron 3 of 7) 19641 ENSMUSG00000077497.1 ENSMUSG00000077497 ENSMUST00000104309 Gm23593 snoRNA Interval_74487 chr17 51811646 51813845 + 0 NA promoter-TSS (ENSMUSG00000023927.15) protein_coding-promoter-TSS (ENSMUSG00000023927.15) -1826 ENSMUSG00000023927.15 ENSMUSG00000023927 ENSMUST00000156051 Satb1 protein_coding Interval_18367 chr10 85317709 85318670 + 0 NA Intergenic Intergenic 4701 ENSMUSG00000050490.7 ENSMUSG00000050490 ENSMUST00000079684 Psma5-ps processed_pseudogene Interval_2213 chr1 37076538 37078563 + 0 NA TTS (ENSMUSG00000050122.19) protein_coding-TTS (ENSMUSG00000050122.19) 48217 ENSMUSG00000050122.19 ENSMUSG00000050122 ENSMUST00000194320 Vwa3b protein_coding Interval_39809 chr12 98644313 98646307 + 0 NA intron (ENSMUSG00000021007.14, intron 3 of 10) protein_coding-intron (ENSMUSG00000021007.14, intron 4 of 11) 3085 ENSMUSG00000113656.1 ENSMUSG00000113656 ENSMUST00000221455 Gm47370 TEC Interval_93244 chr2 71404331 71404997 + 0 NA intron (ENSMUSG00000027018.11, intron 2 of 10) protein_coding-intron (ENSMUSG00000027018.11, intron 2 of 10) 8253 ENSMUSG00000086846.2 ENSMUSG00000086846 ENSMUST00000121697 Gm13642 processed_pseudogene Interval_65438 chr16 22355488 22355703 + 0 NA Intergenic Intergenic 46234 ENSMUSG00000013089.15 ENSMUSG00000013089 ENSMUST00000170393 Etv5 protein_coding Interval_80080 chr18 37354999 37355366 + 0 NA promoter-TSS (ENSMUSG00000045876.4) protein_coding-promoter-TSS (ENSMUSG00000045876.4) 61 ENSMUSG00000045876.4 ENSMUSG00000045876 ENSMUST00000051163 Pcdhb8 protein_coding Interval_76253 chr17 78508197 78509246 + 0 NA intron (ENSMUSG00000024076.10, intron 1 of 12) protein_coding-intron (ENSMUSG00000024076.10, intron 1 of 13) 17139 ENSMUSG00000061062.5 ENSMUSG00000061062 ENSMUST00000079363 Hdac1-ps processed_pseudogene Interval_14454 chr10 33977574 33977899 + 0 NA Intergenic Intergenic 3104 ENSMUSG00000112801.1 ENSMUSG00000112801 ENSMUST00000217878 Gm48034 processed_pseudogene Interval_149269 chr7 96825027 96825242 + 0 NA intron (ENSMUSG00000048078.16, intron 4 of 5) protein_coding-intron (ENSMUSG00000048078.16, intron 19 of 32) -6828 ENSMUSG00000108635.1 ENSMUSG00000108635 ENSMUST00000205925 Gm44633 antisense Interval_133739 chr6 10929886 10930172 + 0 NA intron (ENSMUSG00000107847.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000107847.1, intron 1 of 2) 34539 ENSMUSG00000107847.1 ENSMUSG00000107847 ENSMUST00000204954 Gm35822 lincRNA Interval_153411 chr7 144495598 144495816 + 0 NA intron (ENSMUSG00000037519.17, intron 9 of 17) protein_coding-intron (ENSMUSG00000037519.17, intron 20 of 30) -8693 ENSMUSG00000037519.17 ENSMUSG00000037519 ENSMUST00000183106 Ppfia1 protein_coding Interval_153081 chr7 141237056 141237384 + 0 NA exon (ENSMUSG00000038611.17, exon 1 of 1) protein_coding-exon (ENSMUSG00000038611.17, exon 1 of 1) 1797 ENSMUSG00000038611.17 ENSMUSG00000038611 ENSMUST00000144250 Phrf1 protein_coding Interval_23121 chr11 20043155 20043593 + 0 NA Intergenic Intergenic 69535 ENSMUSG00000020152.7 ENSMUSG00000020152 ENSMUST00000134779 Actr2 protein_coding Interval_118567 chr4 132545222 132546326 + 0 NA promoter-TSS (ENSMUSG00000054405.14) protein_coding-promoter-TSS (ENSMUSG00000054405.14) -885 ENSMUSG00000054405.14 ENSMUSG00000054405 ENSMUST00000105937 Dnajc8 protein_coding Interval_105940 chr3 90194353 90194896 + 0 NA intron (ENSMUSG00000027939.11, intron 32 of 39) protein_coding-intron (ENSMUSG00000027939.11, intron 32 of 39) -4058 ENSMUSG00000084527.1 ENSMUSG00000084527 ENSMUST00000122578 Gm24185 snRNA Interval_66844 chr16 38042958 38043339 + 0 NA Intergenic Intergenic 63061 ENSMUSG00000065188.1 ENSMUSG00000065188 ENSMUST00000083254 Gm25140 snRNA Interval_66975 chr16 38961725 38962883 + 0 NA intron (ENSMUSG00000022790.14, intron 1 of 6) protein_coding-intron (ENSMUSG00000022790.14, intron 1 of 6) 35095 ENSMUSG00000089607.1 ENSMUSG00000089607 ENSMUST00000158982 Gm22500 snRNA Interval_7978 chr1 135013374 135013688 + 0 NA intron (ENSMUSG00000042793.13, intron 2 of 4) protein_coding-intron (ENSMUSG00000042793.13, intron 6 of 17) 8560 ENSMUSG00000042793.13 ENSMUSG00000042793 ENSMUST00000139369 Lgr6 protein_coding Interval_136128 chr6 51381411 51382075 + 0 NA intron (ENSMUSG00000107660.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000107660.1, intron 1 of 2) 2033 ENSMUSG00000107660.1 ENSMUSG00000107660 ENSMUST00000204678 Gm6559 lincRNA Interval_86664 chr19 42394837 42395764 + 0 NA intron (ENSMUSG00000042401.8, intron 2 of 14) protein_coding-intron (ENSMUSG00000042401.8, intron 2 of 14) -15094 ENSMUSG00000117728.1 ENSMUSG00000117728 ENSMUST00000235253 Gm34299 antisense Interval_42597 chr13 16467114 16467329 + 0 NA Intergenic Intergenic -35441 ENSMUSG00000112969.1 ENSMUSG00000112969 ENSMUST00000221425 Gm48496 processed_pseudogene Interval_15243 chr10 43686157 43686381 + 0 NA intron (ENSMUSG00000111749.1, intron 1 of 3) lincRNA-intron (ENSMUSG00000075184.3, intron 3 of 4) 1033 ENSMUSG00000111749.1 ENSMUSG00000111749 ENSMUST00000217559 Gm47927 lincRNA Interval_58074 chr15 27642420 27643185 + 0 NA Intergenic Intergenic 6291 ENSMUSG00000115578.1 ENSMUSG00000115578 ENSMUST00000227140 Gm46506 processed_pseudogene Interval_91277 chr2 37334699 37335324 + 0 NA Intergenic Intergenic 8496 ENSMUSG00000049018.8 ENSMUSG00000049018 ENSMUST00000053990 Olfr368 protein_coding Interval_13714 chr10 21336993 21337423 + 0 NA TTS (ENSMUSG00000019977.16) protein_coding-TTS (ENSMUSG00000019977.16) 4849 ENSMUSG00000112654.1 ENSMUSG00000112654 ENSMUST00000218108 4930455C13Rik antisense Interval_29733 chr11 86464030 86464868 + 0 NA Intergenic Intergenic -20281 ENSMUSG00000020521.7 ENSMUSG00000020521 ENSMUST00000131246 Rnft1 protein_coding Interval_116260 chr4 109112953 109113561 + 0 NA intron (ENSMUSG00000028559.17, intron 4 of 23) protein_coding-intron (ENSMUSG00000028559.17, intron 4 of 23) 47940 ENSMUSG00000088014.1 ENSMUSG00000088014 ENSMUST00000157389 Gm23743 misc_RNA Interval_27786 chr11 70000409 70001145 + 0 NA promoter-TSS (ENSMUSG00000020888.16) protein_coding-promoter-TSS (ENSMUSG00000020888.16) 160 ENSMUSG00000020888.16 ENSMUSG00000020888 ENSMUST00000152732 Dvl2 protein_coding Interval_24521 chr11 33980800 33981242 + 0 NA intron (ENSMUSG00000085684.2, intron 4 of 4) protein_coding-intron (ENSMUSG00000053519.17, intron 1 of 3) 11967 ENSMUSG00000053519.17 ENSMUSG00000053519 ENSMUST00000135034 Kcnip1 protein_coding Interval_11960 chr1 187722832 187723123 + 0 NA intron (ENSMUSG00000026610.13, intron 1 of 1) protein_coding-intron (ENSMUSG00000026610.13, intron 1 of 7) 10172 ENSMUSG00000118492.1 ENSMUSG00000118492 ENSMUST00000238811 AC121143.1 processed_pseudogene Interval_165625 chr9 50490565 50492078 + 0 NA intron (ENSMUSG00000101304.1, intron 1 of 1) antisense-intron (ENSMUSG00000101304.1, intron 1 of 1) -3206 ENSMUSG00000032068.14 ENSMUSG00000032068 ENSMUST00000188047 Plet1 protein_coding Interval_130609 chr5 129175620 129176403 + 0 NA intron (ENSMUSG00000044017.16, intron 15 of 24) protein_coding-intron (ENSMUSG00000044017.16, intron 16 of 25) -47494 ENSMUSG00000060419.8 ENSMUSG00000060419 ENSMUST00000140155 Rps16-ps2 processed_pseudogene Interval_116152 chr4 108172883 108174374 + 0 NA promoter-TSS (ENSMUSG00000028601.18) protein_coding-promoter-TSS (ENSMUSG00000028601.18) 965 ENSMUSG00000028601.18 ENSMUSG00000028601 ENSMUST00000106691 Echdc2 protein_coding Interval_80664 chr18 45901456 45901729 + 0 NA intron (ENSMUSG00000098284.8, intron 2 of 3) antisense-intron (ENSMUSG00000098284.8, intron 2 of 3) -39415 ENSMUSG00000088649.1 ENSMUSG00000088649 ENSMUST00000158024 Gm26262 snoRNA Interval_104887 chr3 78339331 78340437 + 0 NA Intergenic Intergenic 66054 ENSMUSG00000104782.1 ENSMUSG00000104782 ENSMUST00000198459 Gm43326 TEC Interval_117115 chr4 119658383 119658649 + 0 NA exon (ENSMUSG00000032978.14, exon 1 of 3) protein_coding-exon (ENSMUSG00000032978.14, exon 1 of 3) 265 ENSMUSG00000032978.14 ENSMUSG00000032978 ENSMUST00000044426 Guca2b protein_coding Interval_17879 chr10 80557277 80557570 + 0 NA intron (ENSMUSG00000047417.18, intron 1 of 14) protein_coding-intron (ENSMUSG00000047417.18, intron 1 of 14) -10621 ENSMUSG00000047417.18 ENSMUSG00000047417 ENSMUST00000183139 Rexo1 protein_coding Interval_107327 chr3 105892932 105895498 + 0 NA intron (ENSMUSG00000074344.7, intron 1 of 5) protein_coding-intron (ENSMUSG00000074344.7, intron 1 of 6) -10268 ENSMUSG00000118531.1 ENSMUSG00000118531 ENSMUST00000196748 Tmigd3 protein_coding Interval_169239 chr9 95708715 95709303 + 0 NA intron (ENSMUSG00000032839.13, intron 8 of 10) protein_coding-intron (ENSMUSG00000032839.13, intron 9 of 11) 28703 ENSMUSG00000015354.8 ENSMUSG00000015354 ENSMUST00000151210 Pcolce2 protein_coding Interval_148113 chr7 79300674 79300936 + 0 NA exon (ENSMUSG00000108460.1, exon 1 of 1) TEC-exon (ENSMUSG00000108460.1, exon 1 of 1) 1780 ENSMUSG00000108460.1 ENSMUSG00000108460 ENSMUST00000205557 Gm39041 TEC Interval_21700 chr11 3786103 3787202 + 0 NA intron (ENSMUSG00000020435.17, intron 2 of 2) protein_coding-intron (ENSMUSG00000020435.17, intron 2 of 13) -2240 ENSMUSG00000088352.1 ENSMUSG00000088352 ENSMUST00000157727 Gm24013 snoRNA Interval_633 chr1 9298481 9300165 + 0 NA promoter-TSS (ENSMUSG00000025909.16) protein_coding-promoter-TSS (ENSMUSG00000025909.16) 12401 ENSMUSG00000102871.1 ENSMUSG00000102871 ENSMUST00000195180 Gm37143 TEC Interval_113040 chr4 47148081 47149420 + 0 NA Intergenic Intergenic -22919 ENSMUSG00000083491.1 ENSMUSG00000083491 ENSMUST00000118334 Gm12423 processed_pseudogene Interval_154090 chr8 12606386 12608035 + 0 NA Intergenic Intergenic -33890 ENSMUSG00000097421.2 ENSMUSG00000097421 ENSMUST00000180858 D630011A20Rik bidirectional_promoter_lncRNA Interval_35533 chr12 24571491 24572838 + 0 NA promoter-TSS (ENSMUSG00000020656.16) protein_coding-promoter-TSS (ENSMUSG00000020656.16) -8555 ENSMUSG00000020656.16 ENSMUSG00000020656 ENSMUST00000020985 Grhl1 protein_coding Interval_60855 chr15 77181275 77182248 + 0 NA intron (ENSMUSG00000033565.18, intron 1 of 3) protein_coding-intron (ENSMUSG00000033565.18, intron 2 of 12) -3497 ENSMUSG00000116185.1 ENSMUSG00000116185 ENSMUST00000230993 Gm49411 TEC Interval_62092 chr15 86430231 86430423 + 0 NA intron (ENSMUSG00000051864.10, intron 11 of 12) protein_coding-intron (ENSMUSG00000051864.10, intron 11 of 12) 44771 ENSMUSG00000115918.1 ENSMUSG00000115918 ENSMUST00000229685 A930001M01Rik antisense Interval_151961 chr7 127809400 127812071 + 0 NA intron (ENSMUSG00000030806.6, intron 1 of 3) protein_coding-intron (ENSMUSG00000030806.6, intron 6 of 9) 189 ENSMUSG00000030806.6 ENSMUSG00000030806 ENSMUST00000156135 Stx1b protein_coding Interval_157232 chr8 68276069 68277585 + 0 NA exon (ENSMUSG00000053886.4, exon 1 of 9) protein_coding-exon (ENSMUSG00000053886.4, exon 1 of 9) -5480 ENSMUSG00000053886.4 ENSMUSG00000053886 ENSMUST00000212166 Sh2d4a protein_coding Interval_74830 chr17 56771627 56771843 + 0 NA exon (ENSMUSG00000090273.3, exon 3 of 3) protein_coding-exon (ENSMUSG00000090273.3, exon 3 of 3) 1485 ENSMUSG00000090273.3 ENSMUSG00000090273 ENSMUST00000168666 Prr22 protein_coding Interval_89946 chr2 26638753 26640627 + 0 NA promoter-TSS (ENSMUSG00000077192.3) snoRNA-promoter-TSS (ENSMUSG00000077192.3) -369 ENSMUSG00000077192.3 ENSMUSG00000077192 ENSMUST00000104004 Snora17 snoRNA Interval_73315 chr17 36157908 36158307 + 0 NA exon (ENSMUSG00000092289.1, exon 1 of 1) processed_pseudogene-exon (ENSMUSG00000092289.1, exon 1 of 1) 119 ENSMUSG00000092289.1 ENSMUSG00000092289 ENSMUST00000174752 Gm6659 processed_pseudogene Interval_150523 chr7 111846375 111846738 + 0 NA Intergenic Intergenic 11999 ENSMUSG00000110065.1 ENSMUSG00000110065 ENSMUST00000211213 Gm45588 processed_pseudogene Interval_130969 chr5 134329255 134329627 + 0 NA Intergenic Intergenic 2987 ENSMUSG00000093311.1 ENSMUSG00000093311 ENSMUST00000175570 Mir3965 miRNA Interval_165640 chr9 50603350 50604720 + 0 NA promoter-TSS (ENSMUSG00000000171.5) protein_coding-promoter-TSS (ENSMUSG00000000171.5) 125 ENSMUSG00000039016.5 ENSMUSG00000039016 ENSMUST00000044051 Timm8b protein_coding Interval_166339 chr9 58438492 58439276 + 0 NA Intergenic Intergenic -16238 ENSMUSG00000097651.2 ENSMUSG00000097651 ENSMUST00000181967 4930461G14Rik lincRNA Interval_50987 chr14 21509244 21509963 + 0 NA intron (ENSMUSG00000021767.19, intron 1 of 1) protein_coding-intron (ENSMUSG00000021767.19, intron 1 of 16) -7272 ENSMUSG00000021767.19 ENSMUSG00000021767 ENSMUST00000226589 Kat6b protein_coding Interval_80640 chr18 45039534 45040001 + 0 NA Intergenic Intergenic -5095 ENSMUSG00000118013.1 ENSMUSG00000118013 ENSMUST00000238022 Gm31706 lincRNA Interval_32729 chr11 110098042 110098242 + 0 NA Intergenic Intergenic -32769 ENSMUSG00000041828.15 ENSMUSG00000041828 ENSMUST00000106662 Abca8a protein_coding Interval_12148 chr1 190131584 190131824 + 0 NA intron (ENSMUSG00000010175.13, intron 4 of 4) protein_coding-intron (ENSMUSG00000010175.13, intron 4 of 4) -36966 ENSMUSG00000099404.1 ENSMUSG00000099404 ENSMUST00000189880 Gm28172 antisense Interval_42624 chr13 17065132 17066313 + 0 NA intron (ENSMUSG00000055137.7, intron 12 of 13) protein_coding-intron (ENSMUSG00000055137.7, intron 12 of 13) 14801 ENSMUSG00000098218.1 ENSMUSG00000098218 ENSMUST00000182807 Gm27043 processed_pseudogene Interval_27095 chr11 62845244 62847116 + 0 NA promoter-TSS (ENSMUSG00000090173.8) protein_coding-promoter-TSS (ENSMUSG00000090173.8) -943 ENSMUSG00000090173.8 ENSMUSG00000090173 ENSMUST00000127646 Fbxw10 protein_coding Interval_169775 chr9 101152249 101152542 + 0 NA TTS (ENSMUSG00000104061.1) TEC-TTS (ENSMUSG00000104061.1) 2083 ENSMUSG00000104061.1 ENSMUSG00000104061 ENSMUST00000195293 Gm37953 TEC Interval_170101 chr9 104444677 104445321 + 0 NA Intergenic Intergenic 18886 ENSMUSG00000089406.1 ENSMUSG00000089406 ENSMUST00000158781 Mir2136 miRNA Interval_104981 chr3 79487751 79487981 + 0 NA intron (ENSMUSG00000061175.12, intron 12 of 12) protein_coding-intron (ENSMUSG00000061175.12, intron 12 of 16) 44010 ENSMUSG00000061175.12 ENSMUSG00000061175 ENSMUST00000139171 Fnip2 protein_coding Interval_169170 chr9 94968878 94969779 + 0 NA intron (ENSMUSG00000031129.9, intron 9 of 15) protein_coding-intron (ENSMUSG00000031129.9, intron 9 of 15) 23356 ENSMUSG00000111087.1 ENSMUSG00000111087 ENSMUST00000214362 Gm47168 processed_pseudogene Interval_115812 chr4 104813403 104814304 + 0 NA Intergenic Intergenic 14645 ENSMUSG00000029656.13 ENSMUSG00000029656 ENSMUST00000123892 C8b protein_coding Interval_134123 chr6 20908206 20908701 + 0 NA Intergenic Intergenic 62537 ENSMUSG00000106763.1 ENSMUSG00000106763 ENSMUST00000201133 Gm19102 processed_pseudogene Interval_94041 chr2 82013795 82014434 + 0 NA Intergenic Intergenic 108997 ENSMUSG00000082666.1 ENSMUSG00000082666 ENSMUST00000120739 Gm13677 processed_pseudogene Interval_141603 chr6 130755353 130756222 + 0 NA Intergenic Intergenic -9560 ENSMUSG00000098015.3 ENSMUSG00000098015 ENSMUST00000204519 Gm44527 transcribed_unprocessed_pseudogene Interval_169696 chr9 100460571 100460847 + 0 NA intron (ENSMUSG00000044244.18, intron 4 of 4) protein_coding-intron (ENSMUSG00000044244.18, intron 6 of 6) 9900 ENSMUSG00000044244.18 ENSMUSG00000044244 ENSMUST00000122880 Il20rb protein_coding Interval_142036 chr6 136661156 136662397 + 0 NA promoter-TSS (ENSMUSG00000030214.7) protein_coding-promoter-TSS (ENSMUSG00000030214.7) 97 ENSMUSG00000030214.7 ENSMUSG00000030214 ENSMUST00000133911 Plbd1 protein_coding Interval_164378 chr9 36538103 36538320 + 0 NA exon (ENSMUSG00000099274.1, exon 1 of 1) processed_pseudogene-exon (ENSMUSG00000099274.1, exon 1 of 1) 279 ENSMUSG00000099274.1 ENSMUSG00000099274 ENSMUST00000183745 Gm27218 processed_pseudogene Interval_38835 chr12 83114356 83114931 + 0 NA intron (ENSMUSG00000021219.16, intron 14 of 16) protein_coding-intron (ENSMUSG00000021219.16, intron 13 of 14) 7473 ENSMUSG00000104380.1 ENSMUSG00000104380 ENSMUST00000193468 4933436F18Rik TEC Interval_146741 chr7 49845203 49845479 + 0 NA intron (ENSMUSG00000030505.17, intron 13 of 15) protein_coding-intron (ENSMUSG00000030505.17, intron 13 of 15) 31139 ENSMUSG00000109154.1 ENSMUSG00000109154 ENSMUST00000208559 Gm44822 TEC Interval_95161 chr2 104444920 104445407 + 0 NA intron (ENSMUSG00000027177.14, intron 3 of 16) protein_coding-intron (ENSMUSG00000027177.14, intron 3 of 15) -5911 ENSMUSG00000027177.14 ENSMUSG00000027177 ENSMUST00000132622 Hipk3 protein_coding Interval_22511 chr11 11272523 11272739 + 0 NA Intergenic Intergenic -39802 ENSMUSG00000082875.1 ENSMUSG00000082875 ENSMUST00000117333 Gm12598 processed_pseudogene Interval_81868 chr18 65519126 65519470 + 0 NA Intergenic Intergenic 12503 ENSMUSG00000117860.1 ENSMUSG00000117860 ENSMUST00000236404 Gm30018 lincRNA Interval_96631 chr2 126663076 126663654 + 0 NA promoter-TSS (ENSMUSG00000027361.15) protein_coding-promoter-TSS (ENSMUSG00000027361.15) -75 ENSMUSG00000027361.15 ENSMUSG00000027361 ENSMUST00000137335 Gabpb1 protein_coding Interval_66443 chr16 33883104 33883776 + 0 NA intron (ENSMUSG00000022817.15, intron 4 of 14) protein_coding-intron (ENSMUSG00000022817.15, intron 4 of 14) -8501 ENSMUSG00000022817.15 ENSMUSG00000022817 ENSMUST00000231409 Itgb5 protein_coding Interval_112350 chr4 40749549 40750355 + 0 NA intron (ENSMUSG00000028409.11, intron 5 of 7) protein_coding-intron (ENSMUSG00000028409.11, intron 5 of 11) 7879 ENSMUSG00000028409.11 ENSMUSG00000028409 ENSMUST00000137415 Smu1 protein_coding Interval_39098 chr12 85024595 85024802 + 0 NA intron (ENSMUSG00000021244.15, intron 4 of 19) protein_coding-intron (ENSMUSG00000021244.15, intron 4 of 20) -17529 ENSMUSG00000021244.15 ENSMUSG00000021244 ENSMUST00000166605 Ylpm1 protein_coding Interval_61790 chr15 84178690 84178954 + 0 NA intron (ENSMUSG00000041653.5, intron 5 of 7) protein_coding-intron (ENSMUSG00000041653.5, intron 5 of 7) -3092 ENSMUSG00000116227.1 ENSMUSG00000116227 ENSMUST00000231124 Gm49513 processed_transcript Interval_49543 chr13 112827110 112827428 + 0 NA intron (ENSMUSG00000021759.14, intron 1 of 5) protein_coding-intron (ENSMUSG00000021759.14, intron 1 of 5) 26406 ENSMUSG00000021759.14 ENSMUSG00000021759 ENSMUST00000070951 Plpp1 protein_coding Interval_88842 chr2 11578522 11579751 + 0 NA Intergenic Intergenic 11722 ENSMUSG00000037197.11 ENSMUSG00000037197 ENSMUST00000156469 Rbm17 protein_coding Interval_88197 chr19 60588374 60589160 + 0 NA Intergenic Intergenic 8238 ENSMUSG00000092655.1 ENSMUSG00000092655 ENSMUST00000174914 Gm25238 miRNA Interval_29399 chr11 83738697 83740007 + 0 NA Intergenic Intergenic -7588 ENSMUSG00000051748.2 ENSMUSG00000051748 ENSMUST00000070832 Wfdc21 protein_coding Interval_147626 chr7 70330391 70332345 + 0 NA intron (ENSMUSG00000109097.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000109097.1, intron 1 of 1) 6475 ENSMUSG00000109097.1 ENSMUSG00000109097 ENSMUST00000207682 Gm29683 lincRNA Interval_25411 chr11 47813885 47814124 + 0 NA intron (ENSMUSG00000020354.15, intron 1 of 2) protein_coding-intron (ENSMUSG00000020354.15, intron 1 of 2) 98541 ENSMUSG00000065804.1 ENSMUSG00000065804 ENSMUST00000083870 Gm23039 snRNA Interval_344 chr1 4369006 4369366 + 0 NA intron (ENSMUSG00000025900.13, intron 1 of 3) protein_coding-intron (ENSMUSG00000025900.13, intron 1 of 29) -4357 ENSMUSG00000104123.1 ENSMUSG00000104123 ENSMUST00000194382 Gm37483 TEC Interval_123581 chr5 33618665 33619462 + 0 NA intron (ENSMUSG00000037339.17, intron 1 of 4) protein_coding-intron (ENSMUSG00000037339.17, intron 1 of 4) 9999 ENSMUSG00000037339.17 ENSMUSG00000037339 ENSMUST00000140043 Fam53a protein_coding Interval_40444 chr12 104922566 104923350 + 0 NA Intergenic Intergenic 3731 ENSMUSG00000100975.2 ENSMUSG00000100975 ENSMUST00000185486 Gm28875 lincRNA Interval_109962 chr3 152197239 152197671 + 0 NA intron (ENSMUSG00000028035.13, intron 2 of 3) protein_coding-intron (ENSMUSG00000028035.13, intron 2 of 5) 12602 ENSMUSG00000028035.13 ENSMUSG00000028035 ENSMUST00000196291 Dnajb4 protein_coding Interval_143932 chr7 18146003 18146699 + 0 NA intron (ENSMUSG00000108545.1, intron 1 of 3) antisense-intron (ENSMUSG00000108545.1, intron 1 of 4) -30143 ENSMUSG00000066756.5 ENSMUSG00000066756 ENSMUST00000152973 Igfl3 protein_coding Interval_163049 chr9 14813247 14813440 + 0 NA intron (ENSMUSG00000031928.15, intron 10 of 18) protein_coding-intron (ENSMUSG00000031928.15, intron 11 of 19) -5303 ENSMUSG00000111817.1 ENSMUSG00000111817 ENSMUST00000216810 Gm47154 processed_pseudogene Interval_170179 chr9 105970590 105972484 + 0 NA Intergenic Intergenic -10894 ENSMUSG00000091345.9 ENSMUSG00000091345 ENSMUST00000189127 Col6a5 protein_coding Interval_19700 chr10 108190872 108191274 + 0 NA intron (ENSMUSG00000019907.10, intron 1 of 24) protein_coding-intron (ENSMUSG00000019907.10, intron 1 of 25) -48641 ENSMUSG00000112401.1 ENSMUSG00000112401 ENSMUST00000219675 Gm47999 processed_pseudogene Interval_172820 chrX 50602462 50603254 + 0 NA intron (ENSMUSG00000085396.7, intron 8 of 19) processed_transcript-intron (ENSMUSG00000085396.7, intron 4 of 6) -37975 ENSMUSG00000085396.7 ENSMUSG00000085396 ENSMUST00000148530 Firre processed_transcript Interval_102524 chr3 27474030 27474303 + 0 NA intron (ENSMUSG00000039286.12, intron 12 of 26) protein_coding-intron (ENSMUSG00000039286.12, intron 11 of 25) -72475 ENSMUSG00000106625.1 ENSMUSG00000106625 ENSMUST00000198723 Gm43344 TEC Interval_53433 chr14 57407194 57408056 + 0 NA Intergenic Intergenic -9129 ENSMUSG00000021947.11 ENSMUSG00000021947 ENSMUST00000225765 Cryl1 protein_coding Interval_152736 chr7 137054281 137054785 + 0 NA intron (ENSMUSG00000054612.4, intron 2 of 4) protein_coding-intron (ENSMUSG00000054612.4, intron 2 of 4) -113287 ENSMUSG00000110174.1 ENSMUSG00000110174 ENSMUST00000211656 Gm45499 processed_pseudogene Interval_125454 chr5 67268736 67270131 + 0 NA TTS (ENSMUSG00000037720.16) protein_coding-TTS (ENSMUSG00000037720.16) -8171 ENSMUSG00000107319.1 ENSMUSG00000107319 ENSMUST00000201816 Gm42670 antisense Interval_13424 chr10 18107125 18107665 + 0 NA TTS (ENSMUSG00000019854.17) protein_coding-TTS (ENSMUSG00000019854.17) 3183 ENSMUSG00000019854.17 ENSMUSG00000019854 ENSMUST00000150533 Reps1 protein_coding Interval_139376 chr6 99622948 99623990 + 0 NA intron (ENSMUSG00000030068.4, intron 1 of 1) protein_coding-intron (ENSMUSG00000030068.4, intron 3 of 5) 8907 ENSMUSG00000030068.4 ENSMUSG00000030068 ENSMUST00000176255 Gm20696 protein_coding Interval_104859 chr3 76074063 76074745 + 0 NA promoter-TSS (ENSMUSG00000034098.14) protein_coding-promoter-TSS (ENSMUSG00000034098.14) -32681 ENSMUSG00000104223.1 ENSMUSG00000104223 ENSMUST00000194986 Gm18428 processed_pseudogene Interval_115081 chr4 89365842 89366873 + 0 NA Intergenic Intergenic -15600 ENSMUSG00000085147.1 ENSMUSG00000085147 ENSMUST00000129908 Gm12609 processed_transcript Interval_23577 chr11 23504780 23505941 + 0 NA Intergenic Intergenic -7521 ENSMUSG00000106362.1 ENSMUSG00000106362 ENSMUST00000197943 Gm47279 miRNA Interval_105734 chr3 89030868 89031419 + 0 NA intron (ENSMUSG00000028053.13, intron 7 of 27) protein_coding-intron (ENSMUSG00000028053.13, intron 6 of 26) 7960 ENSMUSG00000028053.13 ENSMUSG00000028053 ENSMUST00000189824 Ash1l protein_coding Interval_99979 chr2 166212907 166213180 + 0 NA Intergenic Intergenic -4416 ENSMUSG00000085046.1 ENSMUSG00000085046 ENSMUST00000129407 Gm11467 lincRNA Interval_6490 chr1 112042974 112043608 + 0 NA Intergenic Intergenic 13819 ENSMUSG00000099732.2 ENSMUSG00000099732 ENSMUST00000185787 Gm17752 processed_pseudogene Interval_22422 chr11 9939814 9940058 + 0 NA Intergenic Intergenic -202315 ENSMUSG00000081629.1 ENSMUSG00000081629 ENSMUST00000117907 Eif3s6-ps1 processed_pseudogene Interval_123980 chr5 36995997 36997343 + 0 NA Intergenic Intergenic -19714 ENSMUSG00000039474.13 ENSMUSG00000039474 ENSMUST00000167937 Wfs1 protein_coding Interval_163731 chr9 24982955 24983287 + 0 NA intron (ENSMUSG00000111866.1, intron 2 of 4) lincRNA-intron (ENSMUSG00000111866.1, intron 2 of 4) 8913 ENSMUSG00000111866.1 ENSMUSG00000111866 ENSMUST00000214469 E130101E03Rik lincRNA Interval_37840 chr12 72427735 72428349 + 0 NA Intergenic Intergenic -13993 ENSMUSG00000021090.16 ENSMUSG00000021090 ENSMUST00000221282 Lrrc9 protein_coding Interval_42618 chr13 16921050 16921312 + 0 NA intron (ENSMUSG00000055137.7, intron 13 of 13) protein_coding-intron (ENSMUSG00000055137.7, intron 13 of 13) -16428 ENSMUSG00000113851.1 ENSMUSG00000113851 ENSMUST00000223465 Gm48503 antisense Interval_131627 chr5 138913007 138913855 + 0 NA Intergenic Intergenic 80850 ENSMUSG00000025856.15 ENSMUSG00000025856 ENSMUST00000132051 Pdgfa protein_coding Interval_54912 chr14 76177395 76178691 + 0 NA Intergenic Intergenic 59502 ENSMUSG00000095427.2 ENSMUSG00000095427 ENSMUST00000095471 Rps2-ps6 processed_pseudogene Interval_144387 chr7 24850284 24851434 + 0 NA Intergenic Intergenic -10087 ENSMUSG00000108302.1 ENSMUSG00000108302 ENSMUST00000205486 Gm18207 processed_pseudogene Interval_168313 chr9 78615379 78616405 + 0 NA exon (ENSMUSG00000046186.8, exon 1 of 33) protein_coding-exon (ENSMUSG00000046186.8, exon 1 of 33) 129 ENSMUSG00000046186.8 ENSMUSG00000046186 ENSMUST00000163608 Cd109 protein_coding Interval_136893 chr6 63255882 63258095 + 0 NA exon (ENSMUSG00000108242.1, exon 1 of 1) processed_transcript-exon (ENSMUSG00000108242.1, exon 1 of 1) 637 ENSMUSG00000108242.1 ENSMUSG00000108242 ENSMUST00000203667 9330118I20Rik processed_transcript Interval_151921 chr7 127545825 127546057 + 0 NA intron (ENSMUSG00000053877.12, intron 22 of 30) protein_coding-intron (ENSMUSG00000053877.12, intron 21 of 29) -14144 ENSMUSG00000107023.2 ENSMUSG00000107023 ENSMUST00000206825 Gm42715 protein_coding Interval_12487 chr1 194219079 194219532 + 0 NA intron (ENSMUSG00000103692.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000103692.1, intron 1 of 2) 3454 ENSMUSG00000103692.1 ENSMUSG00000103692 ENSMUST00000193395 4930503O07Rik lincRNA Interval_108915 chr3 133328010 133328226 + 0 NA intron (ENSMUSG00000028013.16, intron 4 of 8) protein_coding-intron (ENSMUSG00000028013.16, intron 4 of 11) 6650 ENSMUSG00000028013.16 ENSMUSG00000028013 ENSMUST00000196807 Ppa2 protein_coding Interval_36627 chr12 51622960 51623475 + 0 NA exon (ENSMUSG00000020954.16, exon 14 of 18) protein_coding-exon (ENSMUSG00000020954.16, exon 14 of 18) 20581 ENSMUSG00000020954.16 ENSMUSG00000020954 ENSMUST00000218212 Strn3 protein_coding Interval_144421 chr7 25055274 25055741 + 0 NA intron (ENSMUSG00000003378.9, intron 12 of 20) protein_coding-intron (ENSMUSG00000003378.9, intron 11 of 19) 16839 ENSMUSG00000003378.9 ENSMUSG00000003378 ENSMUST00000205993 Grik5 protein_coding Interval_135572 chr6 40598313 40599164 + 0 NA Intergenic Intergenic -12948 ENSMUSG00000029915.14 ENSMUSG00000029915 ENSMUST00000177178 Clec5a protein_coding Interval_8334 chr1 137423655 137424199 + 0 NA Intergenic Intergenic -56680 ENSMUSG00000088164.1 ENSMUSG00000088164 ENSMUST00000157539 Gm23534 snoRNA Interval_9775 chr1 162053526 162053841 + 0 NA intron (ENSMUSG00000040265.16, intron 16 of 20) protein_coding-intron (ENSMUSG00000040265.16, intron 16 of 19) 34785 ENSMUSG00000102994.1 ENSMUSG00000102994 ENSMUST00000193239 Gm37767 TEC Interval_25946 chr11 53009340 53010143 + 0 NA intron (ENSMUSG00000036264.9, intron 4 of 15) protein_coding-intron (ENSMUSG00000036264.9, intron 4 of 15) 110315 ENSMUSG00000087668.1 ENSMUSG00000087668 ENSMUST00000137096 Gm11186 antisense Interval_17538 chr10 77599743 77600126 + 0 NA Intergenic Intergenic -6263 ENSMUSG00000112241.1 ENSMUSG00000112241 ENSMUST00000174113 Gm49325 protein_coding Interval_77261 chr17 87635779 87637270 + 0 NA promoter-TSS (ENSMUSG00000045394.9) protein_coding-promoter-TSS (ENSMUSG00000045394.9) 545 ENSMUSG00000045394.9 ENSMUSG00000045394 ENSMUST00000234623 Epcam protein_coding Interval_21994 chr11 5647083 5647466 + 0 NA intron (ENSMUSG00000020481.15, intron 25 of 25) protein_coding-intron (ENSMUSG00000020481.15, intron 23 of 26) 13135 ENSMUSG00000081021.1 ENSMUSG00000081021 ENSMUST00000120982 Gm11964 processed_pseudogene Interval_115210 chr4 94469534 94470643 + 0 NA intron (ENSMUSG00000087128.7, intron 1 of 4) processed_transcript-intron (ENSMUSG00000087128.7, intron 1 of 4) 7092 ENSMUSG00000087128.7 ENSMUSG00000087128 ENSMUST00000127678 Gm12655 processed_transcript Interval_126842 chr5 94229575 94229927 + 0 NA Intergenic Intergenic 11746 ENSMUSG00000096259.2 ENSMUSG00000096259 ENSMUST00000179743 Gm3106 protein_coding Interval_126634 chr5 91326825 91328224 + 0 NA Intergenic Intergenic -44103 ENSMUSG00000107198.1 ENSMUSG00000107198 ENSMUST00000200707 Gm19619 lincRNA Interval_168683 chr9 85823719 85824425 + 0 NA intron (ENSMUSG00000056031.13, intron 1 of 1) processed_transcript-intron (ENSMUSG00000056031.13, intron 2 of 3) -19289 ENSMUSG00000035274.13 ENSMUSG00000035274 ENSMUST00000185559 Tpbg protein_coding Interval_82359 chr18 72576672 72577821 + 0 NA Intergenic Intergenic 147821 ENSMUSG00000117984.1 ENSMUSG00000117984 ENSMUST00000235469 Gm31819 lincRNA Interval_25376 chr11 46873969 46874201 + 0 NA promoter-TSS (ENSMUSG00000082818.1) processed_pseudogene-promoter-TSS (ENSMUSG00000082818.1) -328 ENSMUSG00000082818.1 ENSMUSG00000082818 ENSMUST00000122081 Gm12175 processed_pseudogene Interval_43141 chr13 24621947 24622215 + 0 NA intron (ENSMUSG00000036006.20, intron 1 of 12) protein_coding-intron (ENSMUSG00000036006.20, intron 1 of 13) -17314 ENSMUSG00000085603.3 ENSMUSG00000085603 ENSMUST00000127863 Gm11346 transcribed_processed_pseudogene Interval_171859 chr9 121819368 121819922 + 0 NA promoter-TSS (ENSMUSG00000092042.1) antisense-promoter-TSS (ENSMUSG00000092042.1) -644 ENSMUSG00000092042.1 ENSMUSG00000092042 ENSMUST00000152043 Gm17163 antisense Interval_156860 chr8 61274748 61275051 + 0 NA intron (ENSMUSG00000031642.9, intron 2 of 10) protein_coding-intron (ENSMUSG00000031642.9, intron 2 of 11) 13973 ENSMUSG00000099419.1 ENSMUSG00000099419 ENSMUST00000188654 1700001D01Rik antisense Interval_174182 chrX 137877827 137878033 + 0 NA intron (ENSMUSG00000059203.10, intron 2 of 5) protein_coding-intron (ENSMUSG00000059203.10, intron 1 of 9) -62490 ENSMUSG00000087961.1 ENSMUSG00000087961 ENSMUST00000157336 Gm25393 misc_RNA Interval_97318 chr2 133855011 133855220 + 0 NA Intergenic Intergenic -270694 ENSMUSG00000064983.1 ENSMUSG00000064983 ENSMUST00000083049 Gm25258 snRNA Interval_20904 chr10 121886751 121886938 + 0 NA intron (ENSMUSG00000020121.15, intron 4 of 21) protein_coding-intron (ENSMUSG00000020121.15, intron 4 of 21) -54786 ENSMUSG00000112596.1 ENSMUSG00000112596 ENSMUST00000218664 Gm48804 TEC Interval_113721 chr4 57845007 57845876 + 0 NA intron (ENSMUSG00000038729.24, intron 1 of 3) protein_coding-intron (ENSMUSG00000038729.24, intron 2 of 2) 24391 ENSMUSG00000038729.24 ENSMUSG00000038729 ENSMUST00000102902 Pakap protein_coding Interval_39906 chr12 99573965 99574994 + 0 NA intron (ENSMUSG00000097917.2, intron 2 of 3) bidirectional_promoter_lncRNA-intron (ENSMUSG00000097917.2, intron 2 of 3) 4739 ENSMUSG00000114190.1 ENSMUSG00000114190 ENSMUST00000222451 4930556H04Rik TEC Interval_96351 chr2 121894852 121896071 + 0 NA intron (ENSMUSG00000060227.15, intron 1 of 9) protein_coding-intron (ENSMUSG00000060227.15, intron 1 of 9) -3346 ENSMUSG00000060227.15 ENSMUSG00000060227 ENSMUST00000136023 Casc4 protein_coding Interval_152653 chr7 135746883 135747217 + 0 NA intron (ENSMUSG00000109831.1, intron 1 of 3) lincRNA-intron (ENSMUSG00000109831.1, intron 1 of 3) 4374 ENSMUSG00000109831.1 ENSMUSG00000109831 ENSMUST00000209706 Gm36431 lincRNA Interval_167833 chr9 72939068 72939837 + 0 NA intron (ENSMUSG00000034910.5, intron 1 of 2) protein_coding-intron (ENSMUSG00000034910.5, intron 1 of 2) 13807 ENSMUSG00000034910.5 ENSMUSG00000034910 ENSMUST00000038489 Pygo1 protein_coding Interval_87956 chr19 57372648 57373583 + 0 NA intron (ENSMUSG00000033478.5, intron 4 of 14) protein_coding-intron (ENSMUSG00000033478.5, intron 4 of 16) 12085 ENSMUSG00000033478.5 ENSMUSG00000033478 ENSMUST00000237170 Fam160b1 protein_coding Interval_31303 chr11 99463095 99463406 + 0 NA Intergenic Intergenic -25100 ENSMUSG00000035775.2 ENSMUSG00000035775 ENSMUST00000017743 Krt20 protein_coding Interval_69102 chr16 90678116 90679280 + 0 NA Intergenic Intergenic -1698 ENSMUSG00000116582.1 ENSMUSG00000116582 ENSMUST00000232154 Gm36169 lincRNA Interval_31793 chr11 102903813 102905252 + 0 NA TTS (ENSMUSG00000051378.10) protein_coding-TTS (ENSMUSG00000051378.10) -3620 ENSMUSG00000020932.14 ENSMUSG00000020932 ENSMUST00000127909 Gfap protein_coding Interval_28517 chr11 76454436 76454755 + 0 NA TTS (ENSMUSG00000017631.19) protein_coding-TTS (ENSMUSG00000017631.19) 47390 ENSMUSG00000020843.15 ENSMUSG00000020843 ENSMUST00000164102 Timm22 protein_coding Interval_74494 chr17 51971495 51972122 + 0 NA Intergenic Intergenic -14607 ENSMUSG00000100150.2 ENSMUSG00000100150 ENSMUST00000191539 Gm19585 lincRNA Interval_29100 chr11 80332850 80333450 + 0 NA intron (ENSMUSG00000017692.8, intron 6 of 8) protein_coding-intron (ENSMUSG00000017692.8, intron 6 of 8) -13253 ENSMUSG00000017692.8 ENSMUSG00000017692 ENSMUST00000157016 Rhbdl3 protein_coding Interval_103034 chr3 34653692 34654151 + 0 NA TTS (ENSMUSG00000098254.1) processed_transcript-intron (ENSMUSG00000105265.4, intron 4 of 4) 743 ENSMUSG00000098254.1 ENSMUSG00000098254 ENSMUST00000184690 Gm27611 misc_RNA Interval_143016 chr6 148404186 148404923 + 0 NA intron (ENSMUSG00000030306.14, intron 5 of 16) protein_coding-intron (ENSMUSG00000030306.14, intron 5 of 19) -13225 ENSMUSG00000107706.1 ENSMUSG00000107706 ENSMUST00000203708 Gm44022 TEC Interval_35665 chr12 27139486 27140892 + 0 NA TTS (ENSMUSG00000094002.3) lincRNA-TTS (ENSMUSG00000094002.3) 20314 ENSMUSG00000094002.3 ENSMUSG00000094002 ENSMUST00000183238 Gm9866 lincRNA Interval_150448 chr7 110716620 110716968 + 0 NA Intergenic Intergenic -3397 ENSMUSG00000109749.1 ENSMUSG00000109749 ENSMUST00000209719 Gm18907 processed_pseudogene Interval_39917 chr12 99754626 99754840 + 0 NA intron (ENSMUSG00000021176.6, intron 6 of 6) protein_coding-intron (ENSMUSG00000021176.6, intron 5 of 5) 7521 ENSMUSG00000113877.1 ENSMUSG00000113877 ENSMUST00000220762 Gm47208 TEC Interval_49782 chr13 115088794 115090931 + 0 NA TTS (ENSMUSG00000114470.1) protein_coding-TTS (ENSMUSG00000114470.1) 324 ENSMUSG00000042275.9 ENSMUSG00000042275 ENSMUST00000109226 Pelo protein_coding Interval_67468 chr16 49164257 49164885 + 0 NA intron (ENSMUSG00000092009.1, intron 32 of 40) protein_coding-intron (ENSMUSG00000092009.1, intron 32 of 40) 91201 ENSMUSG00000073976.10 ENSMUSG00000073976 ENSMUST00000098226 1700026J12Rik lincRNA Interval_131112 chr5 135212002 135212199 + 0 NA TTS (ENSMUSG00000002748.7) protein_coding-TTS (ENSMUSG00000002748.7) 4112 ENSMUSG00000080473.1 ENSMUSG00000080473 ENSMUST00000116823 Gm25315 miRNA Interval_41271 chr12 112310910 112311487 + 0 NA Intergenic Intergenic 38869 ENSMUSG00000103080.1 ENSMUSG00000103080 ENSMUST00000194990 Gm38123 TEC Interval_123875 chr5 36207267 36207543 + 0 NA TTS (ENSMUSG00000043430.5) protein_coding-TTS (ENSMUSG00000043430.5) 3384 ENSMUSG00000043430.5 ENSMUSG00000043430 ENSMUST00000052224 Psapl1 protein_coding Interval_109490 chr3 142891180 142891487 + 0 NA intron (ENSMUSG00000097858.2, intron 1 of 1) lincRNA-intron (ENSMUSG00000097858.2, intron 1 of 1) -6742 ENSMUSG00000105671.1 ENSMUSG00000105671 ENSMUST00000197517 Gm31306 transcribed_processed_pseudogene Interval_111788 chr4 29090645 29092607 + 0 NA TTS (ENSMUSG00000086339.1) lincRNA-TTS (ENSMUSG00000086339.1) 1021 ENSMUSG00000086339.1 ENSMUSG00000086339 ENSMUST00000132759 Gm11916 lincRNA Interval_115558 chr4 100778495 100779607 + 0 NA intron (ENSMUSG00000028532.14, intron 1 of 26) protein_coding-intron (ENSMUSG00000028532.14, intron 1 of 26) 197773 ENSMUSG00000082601.1 ENSMUSG00000082601 ENSMUST00000118145 Gm12700 processed_pseudogene Interval_166721 chr9 62253842 62254297 + 0 NA Intergenic Intergenic -9969 ENSMUSG00000111232.1 ENSMUSG00000111232 ENSMUST00000215490 A730043L09Rik lincRNA Interval_16266 chr10 61814179 61814956 + 0 NA Intergenic Intergenic -30420 ENSMUSG00000020086.6 ENSMUSG00000020086 ENSMUST00000020283 Macroh2a2 protein_coding Interval_16919 chr10 69874968 69875262 + 0 NA intron (ENSMUSG00000069601.14, intron 12 of 42) protein_coding-intron (ENSMUSG00000069601.14, intron 1 of 16) -299896 ENSMUSG00000048701.13 ENSMUSG00000048701 ENSMUST00000135607 Ccdc6 protein_coding Interval_53817 chr14 62247262 62247971 + 0 NA Intergenic Intergenic -43264 ENSMUSG00000098096.1 ENSMUSG00000098096 ENSMUST00000183203 Gm26969 lincRNA Interval_38072 chr12 75492414 75493453 + 0 NA TTS (ENSMUSG00000021051.10) protein_coding-TTS (ENSMUSG00000021051.10) 15812 ENSMUSG00000112254.1 ENSMUSG00000112254 ENSMUST00000218033 Gm47690 TEC Interval_81140 chr18 54839159 54839719 + 0 NA TTS (ENSMUSG00000117825.1) processed_pseudogene-TTS (ENSMUSG00000117825.1) 1394 ENSMUSG00000117825.1 ENSMUSG00000117825 ENSMUST00000237299 Gm50365 processed_pseudogene Interval_122975 chr5 28093894 28095142 + 0 NA Intergenic Intergenic 19852 ENSMUSG00000045294.11 ENSMUSG00000045294 ENSMUST00000199728 Insig1 protein_coding Interval_132398 chr5 144703457 144703646 + 0 NA Intergenic Intergenic 20246 ENSMUSG00000082524.3 ENSMUSG00000082524 ENSMUST00000121256 Gm6272 processed_pseudogene Interval_2548 chr1 40228258 40228663 + 0 NA intron (ENSMUSG00000026072.12, intron 1 of 10) protein_coding-intron (ENSMUSG00000026072.12, intron 1 of 10) -9560 ENSMUSG00000103560.1 ENSMUSG00000103560 ENSMUST00000191850 Gm38070 TEC Interval_92033 chr2 52757983 52758868 + 0 NA Intergenic Intergenic -16235 ENSMUSG00000055371.17 ENSMUSG00000055371 ENSMUST00000138290 Stam2 protein_coding Interval_30144 chr11 89673399 89673690 + 0 NA intron (ENSMUSG00000047773.15, intron 3 of 21) protein_coding-intron (ENSMUSG00000047773.15, intron 1 of 16) 167722 ENSMUSG00000047773.15 ENSMUSG00000047773 ENSMUST00000207171 Ankfn1 protein_coding Interval_167465 chr9 69612970 69613177 + 0 NA Intergenic Intergenic -13319 ENSMUSG00000111096.1 ENSMUSG00000111096 ENSMUST00000215589 Gm47203 processed_pseudogene Interval_60256 chr15 70416261 70416682 + 0 NA Intergenic Intergenic -341582 ENSMUSG00000116449.1 ENSMUSG00000116449 ENSMUST00000229501 Gm18155 processed_pseudogene Interval_107778 chr3 113957827 113959328 + 0 NA Intergenic Intergenic 103841 ENSMUSG00000106084.1 ENSMUSG00000106084 ENSMUST00000197877 Gm18163 processed_pseudogene Interval_163776 chr9 25575019 25575220 + 0 NA intron (ENSMUSG00000036611.5, intron 3 of 7) protein_coding-intron (ENSMUSG00000036611.5, intron 3 of 7) -5314 ENSMUSG00000077697.1 ENSMUSG00000077697 ENSMUST00000104509 Gm25346 snoRNA Interval_153792 chr8 8649427 8650779 + 0 NA intron (ENSMUSG00000001300.16, intron 1 of 4) protein_coding-intron (ENSMUSG00000001300.16, intron 1 of 4) -3091 ENSMUSG00000109438.1 ENSMUSG00000109438 ENSMUST00000207688 Gm45073 TEC Interval_153004 chr7 140805152 140806342 + 0 NA Intergenic Intergenic 16399 ENSMUSG00000060314.13 ENSMUSG00000060314 ENSMUST00000150053 Zfp941 protein_coding Interval_143897 chr7 17002269 17002990 + 0 NA Intergenic Intergenic 9921 ENSMUSG00000041117.8 ENSMUSG00000041117 ENSMUST00000094805 Ccdc8 protein_coding Interval_105045 chr3 80079370 80080257 + 0 NA intron (ENSMUSG00000103181.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000103181.1, intron 1 of 2) 9346 ENSMUSG00000103193.1 ENSMUSG00000103193 ENSMUST00000193232 Gm19066 processed_pseudogene Interval_86426 chr19 40394714 40395991 + 0 NA intron (ENSMUSG00000025006.18, intron 4 of 29) protein_coding-intron (ENSMUSG00000025006.18, intron 2 of 21) -18478 ENSMUSG00000025006.18 ENSMUSG00000025006 ENSMUST00000225293 Sorbs1 protein_coding Interval_170650 chr9 109899513 109901198 + 0 NA Intergenic Intergenic 10712 ENSMUSG00000098490.1 ENSMUSG00000098490 ENSMUST00000184522 Mir7089 miRNA Interval_12789 chr10 5418458 5418685 + 0 NA intron (ENSMUSG00000096054.3, intron 9 of 145) protein_coding-intron (ENSMUSG00000096054.3, intron 9 of 31) 61398 ENSMUSG00000094906.1 ENSMUSG00000094906 ENSMUST00000104408 Gm23573 snRNA Interval_37544 chr12 69733310 69733734 + 0 NA intron (ENSMUSG00000054894.6, intron 1 of 1) protein_coding-intron (ENSMUSG00000054894.6, intron 1 of 4) 8532 ENSMUSG00000054894.6 ENSMUSG00000054894 ENSMUST00000222950 Dmac2l protein_coding Interval_136503 chr6 55002815 55003565 + 0 NA Intergenic Intergenic -10566 ENSMUSG00000002797.9 ENSMUSG00000002797 ENSMUST00000204770 Ggct protein_coding Interval_69167 chr16 91085324 91085670 + 0 NA intron (ENSMUSG00000039851.11, intron 1 of 1) protein_coding-intron (ENSMUSG00000039851.11, intron 1 of 1) 9625 ENSMUSG00000039851.11 ENSMUSG00000039851 ENSMUST00000146047 4932438H23Rik protein_coding Interval_41918 chr13 4376635 4376855 + 0 NA intron (ENSMUSG00000113175.1, intron 3 of 3) transcribed_unprocessed_pseudogene-intron (ENSMUSG00000113175.1, intron 2 of 2) 8064 ENSMUSG00000113004.1 ENSMUSG00000113004 ENSMUST00000221635 Gm47951 processed_pseudogene Interval_51510 chr14 29225305 29226430 + 0 NA intron (ENSMUSG00000021991.9, intron 7 of 15) protein_coding-intron (ENSMUSG00000021991.9, intron 11 of 37) 8228 ENSMUSG00000075245.4 ENSMUSG00000075245 ENSMUST00000099961 Gm6043 processed_pseudogene Interval_78402 chr18 12517462 12518327 + 0 NA intron (ENSMUSG00000024421.16, intron 5 of 37) protein_coding-intron (ENSMUSG00000024421.16, intron 42 of 74) -13468 ENSMUSG00000101406.1 ENSMUSG00000101406 ENSMUST00000188118 Gm29200 antisense Interval_28016 chr11 72226758 72227084 + 0 NA Intergenic Intergenic 11749 ENSMUSG00000053574.5 ENSMUSG00000053574 ENSMUST00000124762 4930563E22Rik protein_coding Interval_2473 chr1 39621957 39623522 + 0 NA exon (ENSMUSG00000050967.5, exon 4 of 4) protein_coding-exon (ENSMUSG00000050967.5, exon 4 of 4) -24734 ENSMUSG00000102471.1 ENSMUSG00000102471 ENSMUST00000195631 Gm5100 processed_pseudogene Interval_3648 chr1 60364571 60364844 + 0 NA intron (ENSMUSG00000049439.13, intron 4 of 11) protein_coding-intron (ENSMUSG00000049439.13, intron 5 of 12) 11588 ENSMUSG00000103822.1 ENSMUSG00000103822 ENSMUST00000191764 6030460B20Rik TEC Interval_151573 chr7 123981907 123984158 + 0 NA exon (ENSMUSG00000078591.1, exon 1 of 2) protein_coding-exon (ENSMUSG00000078591.1, exon 1 of 2) 163 ENSMUSG00000078591.1 ENSMUSG00000078591 ENSMUST00000106437 Hs3st4 protein_coding Interval_148915 chr7 90022962 90025690 + 0 NA intron (ENSMUSG00000097585.2, intron 7 of 8) processed_transcript-intron (ENSMUSG00000097585.2, intron 7 of 8) -4834 ENSMUSG00000097585.2 ENSMUSG00000097585 ENSMUST00000208266 E230029C05Rik processed_transcript Interval_11885 chr1 186735851 186736386 + 0 NA exon (ENSMUSG00000001305.5, exon 4 of 5) protein_coding-exon (ENSMUSG00000001305.5, exon 4 of 5) 13207 ENSMUSG00000001305.5 ENSMUSG00000001305 ENSMUST00000162336 Rrp15 protein_coding Interval_86366 chr19 38982127 38982671 + 0 NA intron (ENSMUSG00000114610.1, intron 3 of 8) unprocessed_pseudogene-intron (ENSMUSG00000114610.1, intron 3 of 8) 5752 ENSMUSG00000114610.1 ENSMUSG00000114610 ENSMUST00000225458 Cyp2c52-ps unprocessed_pseudogene Interval_64233 chr16 9396784 9397279 + 0 NA Intergenic Intergenic 238261 ENSMUSG00000116123.1 ENSMUSG00000116123 ENSMUST00000229655 Gm49451 lincRNA Interval_61868 chr15 84766305 84767388 + 0 NA intron (ENSMUSG00000078954.9, intron 9 of 11) protein_coding-intron (ENSMUSG00000078954.9, intron 10 of 12) 20603 ENSMUSG00000016624.15 ENSMUSG00000016624 ENSMUST00000160389 Phf21b protein_coding Interval_156519 chr8 49188142 49188357 + 0 NA Intergenic Intergenic 43720 ENSMUSG00000110465.1 ENSMUSG00000110465 ENSMUST00000212762 Gm45832 TEC Interval_17621 chr10 78259404 78261134 + 0 NA intron (ENSMUSG00000112433.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000112433.1, intron 1 of 1) -4158 ENSMUSG00000112433.1 ENSMUSG00000112433 ENSMUST00000218143 Gm30122 lincRNA Interval_170865 chr9 111342205 111342541 + 0 NA intron (ENSMUSG00000062296.8, intron 2 of 8) protein_coding-intron (ENSMUSG00000062296.8, intron 2 of 21) -32515 ENSMUSG00000062296.8 ENSMUSG00000062296 ENSMUST00000197650 Trank1 protein_coding Interval_144656 chr7 27361139 27361929 + 0 NA intron (ENSMUSG00000011751.16, intron 33 of 35) protein_coding-intron (ENSMUSG00000011751.16, intron 33 of 35) -4115 ENSMUSG00000092367.1 ENSMUSG00000092367 ENSMUST00000126587 Gm20479 protein_coding Interval_74905 chr17 57209276 57209475 + 0 NA intron (ENSMUSG00000024164.15, intron 4 of 7) protein_coding-intron (ENSMUSG00000024164.15, intron 32 of 40) 7853 ENSMUSG00000099066.1 ENSMUSG00000099066 ENSMUST00000184453 Mir6978 miRNA Interval_119884 chr4 140678772 140680434 + 0 NA promoter-TSS (ENSMUSG00000086159.1) lincRNA-promoter-TSS (ENSMUSG00000086159.1) -150 ENSMUSG00000086159.1 ENSMUSG00000086159 ENSMUST00000141469 Gm13025 lincRNA Interval_60045 chr15 64201261 64201491 + 0 NA intron (ENSMUSG00000022377.16, intron 4 of 30) protein_coding-intron (ENSMUSG00000022377.16, intron 4 of 30) -77570 ENSMUSG00000022377.16 ENSMUSG00000022377 ENSMUST00000175963 Asap1 protein_coding Interval_91017 chr2 34371141 34373563 + 0 NA promoter-TSS (ENSMUSG00000038718.15) protein_coding-promoter-TSS (ENSMUSG00000038718.15) -34520 ENSMUSG00000038696.14 ENSMUSG00000038696 ENSMUST00000129633 Mapkap1 protein_coding Interval_3731 chr1 62525468 62525655 + 0 NA intron (ENSMUSG00000052062.14, intron 20 of 22) protein_coding-intron (ENSMUSG00000052062.14, intron 19 of 21) 10381 ENSMUSG00000100750.1 ENSMUSG00000100750 ENSMUST00000185587 Gm29084 antisense Interval_72486 chr17 30115684 30116459 + 0 NA intron (ENSMUSG00000044477.12, intron 2 of 5) protein_coding-intron (ENSMUSG00000044477.12, intron 2 of 4) -20119 ENSMUSG00000044477.12 ENSMUSG00000044477 ENSMUST00000234091 Zfand3 protein_coding Interval_21512 chr10 129025613 129026767 + 0 NA Intergenic Intergenic 13706 ENSMUSG00000107648.4 ENSMUSG00000107648 ENSMUST00000204763 Olfr764-ps1 protein_coding Interval_120216 chr4 144340313 144341641 + 0 NA Intergenic Intergenic 5072 ENSMUSG00000084312.1 ENSMUSG00000084312 ENSMUST00000118380 Gm13122 unprocessed_pseudogene Interval_69267 chr16 91801367 91801563 + 0 NA intron (ENSMUSG00000022957.20, intron 3 of 4) protein_coding-intron (ENSMUSG00000022957.20, intron 5 of 28) -72868 ENSMUSG00000058240.14 ENSMUSG00000058240 ENSMUST00000123751 Cryzl1 protein_coding Interval_69446 chr16 93491963 93492187 + 0 NA Intergenic Intergenic -5001 ENSMUSG00000116595.1 ENSMUSG00000116595 ENSMUST00000231757 Gm30695 lincRNA Interval_110669 chr4 6115742 6116515 + 0 NA Intergenic Intergenic 46254 ENSMUSG00000084360.1 ENSMUSG00000084360 ENSMUST00000121336 Gm11797 processed_pseudogene Interval_60920 chr15 77851269 77851521 + 0 NA Intergenic Intergenic -10639 ENSMUSG00000084497.1 ENSMUSG00000084497 ENSMUST00000122548 Gm22107 snRNA Interval_141176 chr6 125426459 125426932 + 0 NA Intergenic Intergenic 36329 ENSMUSG00000030342.8 ENSMUSG00000030342 ENSMUST00000140024 Cd9 protein_coding Interval_19304 chr10 96403282 96403589 + 0 NA Intergenic Intergenic 5603 ENSMUSG00000094249.2 ENSMUSG00000094249 ENSMUST00000179683 Gm20091 processed_pseudogene Interval_32855 chr11 112132622 112132956 + 0 NA TTS (ENSMUSG00000085324.1) lincRNA-TTS (ENSMUSG00000085324.1) 25351 ENSMUSG00000085324.1 ENSMUSG00000085324 ENSMUST00000146550 Gm11680 lincRNA Interval_86425 chr19 40391478 40392182 + 0 NA exon (ENSMUSG00000025006.18, exon 4 of 4) protein_coding-exon (ENSMUSG00000025006.18, exon 4 of 4) -14956 ENSMUSG00000025006.18 ENSMUSG00000025006 ENSMUST00000225293 Sorbs1 protein_coding Interval_72169 chr17 28391205 28392477 + 0 NA Intergenic Intergenic 34589 ENSMUSG00000117313.1 ENSMUSG00000117313 ENSMUST00000233201 Gm49838 sense_intronic Interval_16029 chr10 60205735 60206544 + 0 NA intron (ENSMUSG00000057337.13, intron 1 of 3) protein_coding-intron (ENSMUSG00000057337.13, intron 1 of 3) 5112 ENSMUSG00000077090.1 ENSMUSG00000077090 ENSMUST00000103902 Gm22117 miRNA Interval_49998 chr13 119442160 119443168 + 0 NA intron (ENSMUSG00000025451.15, intron 4 of 9) protein_coding-intron (ENSMUSG00000025451.15, intron 4 of 10) 13506 ENSMUSG00000025451.15 ENSMUSG00000025451 ENSMUST00000173339 Paip1 protein_coding Interval_102774 chr3 30935970 30937054 + 0 NA exon (ENSMUSG00000037652.15, exon 8 of 17) protein_coding-exon (ENSMUSG00000037652.15, exon 8 of 17) 21126 ENSMUSG00000102369.1 ENSMUSG00000102369 ENSMUST00000194340 9530022L04Rik TEC Interval_79069 chr18 24304191 24305737 + 0 NA Intergenic Intergenic -34402 ENSMUSG00000117570.1 ENSMUSG00000117570 ENSMUST00000234938 Gm38410 lincRNA Interval_51777 chr14 32140302 32141244 + 0 NA Intergenic Intergenic -6814 ENSMUSG00000021907.13 ENSMUSG00000021907 ENSMUST00000130397 Msmb protein_coding Interval_102680 chr3 29783701 29784117 + 0 NA intron (ENSMUSG00000102574.1, intron 3 of 3) lincRNA-intron (ENSMUSG00000102574.1, intron 3 of 3) 12625 ENSMUSG00000103095.1 ENSMUSG00000103095 ENSMUST00000191640 Gm37557 processed_pseudogene Interval_99347 chr2 159866376 159867517 + 0 NA Intergenic Intergenic -7656 ENSMUSG00000081215.1 ENSMUSG00000081215 ENSMUST00000121319 Gm11446 processed_pseudogene Interval_140353 chr6 117021443 117021768 + 0 NA Intergenic Intergenic 39586 ENSMUSG00000107415.1 ENSMUSG00000107415 ENSMUST00000203025 Gm43929 processed_pseudogene Interval_102210 chr3 19500543 19501761 + 0 NA Intergenic Intergenic -30095 ENSMUSG00000027606.12 ENSMUSG00000027606 ENSMUST00000165693 Dnajc5b protein_coding Interval_36377 chr12 42745523 42746453 + 0 NA Intergenic Intergenic 269471 ENSMUSG00000112407.1 ENSMUSG00000112407 ENSMUST00000219475 Gm33340 lincRNA Interval_65679 chr16 25072151 25072364 + 0 NA Intergenic Intergenic 12618 ENSMUSG00000096960.1 ENSMUSG00000096960 ENSMUST00000181655 A230028O05Rik lincRNA Interval_144322 chr7 24473092 24475138 + 0 NA intron (ENSMUSG00000046223.10, intron 4 of 5) protein_coding-intron (ENSMUSG00000046223.10, intron 5 of 6) 11615 ENSMUSG00000046223.10 ENSMUSG00000046223 ENSMUST00000206636 Plaur protein_coding Interval_59452 chr15 53253621 53253819 + 0 NA intron (ENSMUSG00000061731.9, intron 1 of 10) protein_coding-intron (ENSMUSG00000061731.9, intron 1 of 10) -130199 ENSMUSG00000087805.2 ENSMUSG00000087805 ENSMUST00000157180 Gm27926 snRNA Interval_31352 chr11 100205441 100206523 + 0 NA promoter-TSS (ENSMUSG00000045545.8) protein_coding-promoter-TSS (ENSMUSG00000045545.8) 48 ENSMUSG00000045545.8 ENSMUSG00000045545 ENSMUST00000007272 Krt14 protein_coding Interval_31155 chr11 98488824 98489115 + 0 NA promoter-TSS (ENSMUSG00000018168.8) protein_coding-promoter-TSS (ENSMUSG00000018168.8) -11566 ENSMUSG00000018168.8 ENSMUSG00000018168 ENSMUST00000152400 Ikzf3 protein_coding Interval_129128 chr5 117571103 117571523 + 0 NA intron (ENSMUSG00000061578.8, intron 4 of 20) protein_coding-intron (ENSMUSG00000061578.8, intron 4 of 20) 50614 ENSMUSG00000107199.1 ENSMUSG00000107199 ENSMUST00000201553 Gm42550 TEC Interval_20610 chr10 119439108 119439517 + 0 NA exon (ENSMUSG00000085454.1, exon 2 of 2) antisense-exon (ENSMUSG00000085454.1, exon 2 of 2) 4312 ENSMUSG00000085592.1 ENSMUSG00000085592 ENSMUST00000155184 Gm16321 antisense Interval_78858 chr18 21008006 21009569 + 0 NA exon (ENSMUSG00000024317.15, exon 2 of 6) protein_coding-exon (ENSMUSG00000024317.15, exon 2 of 6) 6692 ENSMUSG00000024317.15 ENSMUSG00000024317 ENSMUST00000234169 Rnf138 protein_coding Interval_111265 chr4 16197565 16197927 + 0 NA intron (ENSMUSG00000085112.1, intron 2 of 6) processed_transcript-intron (ENSMUSG00000085112.1, intron 2 of 6) 33636 ENSMUSG00000085112.1 ENSMUSG00000085112 ENSMUST00000151122 A530072M11Rik processed_transcript Interval_47770 chr13 92504694 92504985 + 0 NA intron (ENSMUSG00000021706.14, intron 7 of 13) protein_coding-intron (ENSMUSG00000021706.14, intron 11 of 17) 12235 ENSMUSG00000021706.14 ENSMUSG00000021706 ENSMUST00000154850 Zfyve16 protein_coding Interval_160295 chr8 107824374 107824880 + 0 NA Intergenic Intergenic -16330 ENSMUSG00000095727.1 ENSMUSG00000095727 ENSMUST00000178119 Gm23646 miRNA Interval_120397 chr4 148358224 148359436 + 0 NA intron (ENSMUSG00000086326.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000086326.1, intron 1 of 1) 630 ENSMUSG00000086326.1 ENSMUSG00000086326 ENSMUST00000138802 Gm13200 lincRNA Interval_79423 chr18 31814795 31815534 + 0 NA intron (ENSMUSG00000024400.16, intron 1 of 7) protein_coding-intron (ENSMUSG00000024400.16, intron 1 of 21) 5355 ENSMUSG00000091561.3 ENSMUSG00000091561 ENSMUST00000165131 Gm6665 processed_pseudogene Interval_166786 chr9 62691642 62692319 + 0 NA intron (ENSMUSG00000032243.8, intron 1 of 27) protein_coding-intron (ENSMUSG00000032243.8, intron 1 of 29) 14120 ENSMUSG00000032243.8 ENSMUSG00000032243 ENSMUST00000159012 Itga11 protein_coding Interval_94840 chr2 96314899 96315787 + 0 NA Intergenic Intergenic 181908 ENSMUSG00000082327.1 ENSMUSG00000082327 ENSMUST00000120750 Gm13801 processed_pseudogene Interval_124779 chr5 53947366 53948834 + 0 NA Intergenic Intergenic 29656 ENSMUSG00000107173.1 ENSMUSG00000107173 ENSMUST00000201049 Gm43266 TEC Interval_5021 chr1 84322340 84322557 + 0 NA intron (ENSMUSG00000045658.16, intron 2 of 4) protein_coding-intron (ENSMUSG00000045658.16, intron 1 of 2) -37825 ENSMUSG00000045658.16 ENSMUSG00000045658 ENSMUST00000187992 Pid1 protein_coding Interval_103102 chr3 35340615 35341810 + 0 NA Intergenic Intergenic 15598 ENSMUSG00000093499.1 ENSMUSG00000093499 ENSMUST00000177270 Gm25442 miRNA Interval_34734 chr12 9029462 9031005 + 0 NA intron (ENSMUSG00000066637.2, intron 1 of 3) protein_coding-intron (ENSMUSG00000066637.2, intron 1 of 2) 206 ENSMUSG00000066637.2 ENSMUSG00000066637 ENSMUST00000219470 Ttc32 protein_coding Interval_23880 chr11 27569061 27569309 + 0 NA Intergenic Intergenic -61085 ENSMUSG00000082243.1 ENSMUSG00000082243 ENSMUST00000122413 Gm3810 processed_pseudogene Interval_138460 chr6 88415889 88416868 + 0 NA intron (ENSMUSG00000033216.9, intron 1 of 5) protein_coding-intron (ENSMUSG00000033216.9, intron 1 of 6) 10401 ENSMUSG00000084582.1 ENSMUSG00000084582 ENSMUST00000122633 Gm25178 misc_RNA Interval_174473 chrX 153037063 153039075 + 0 NA promoter-TSS (ENSMUSG00000047238.4) protein_coding-promoter-TSS (ENSMUSG00000047238.4) 440 ENSMUSG00000085982.1 ENSMUSG00000085982 ENSMUST00000127673 9530051G07Rik processed_transcript Interval_140947 chr6 122927412 122927829 + 0 NA intron (ENSMUSG00000049037.8, intron 2 of 5) protein_coding-intron (ENSMUSG00000049037.8, intron 2 of 5) 5772 ENSMUSG00000049037.8 ENSMUSG00000049037 ENSMUST00000060484 Clec4a1 protein_coding Interval_8224 chr1 136594254 136594771 + 0 NA Intergenic Intergenic 10956 ENSMUSG00000104366.1 ENSMUSG00000104366 ENSMUST00000193674 4933409D19Rik lincRNA Interval_120898 chr4 151411455 151411674 + 0 NA intron (ENSMUSG00000014592.21, intron 5 of 24) protein_coding-intron (ENSMUSG00000014592.21, intron 5 of 23) 35094 ENSMUSG00000085593.1 ENSMUSG00000085593 ENSMUST00000129097 4930589P08Rik antisense Interval_52166 chr14 37742324 37743727 + 0 NA Intergenic Intergenic 20908 ENSMUSG00000114766.1 ENSMUSG00000114766 ENSMUST00000225782 Gm5203 processed_pseudogene Interval_105258 chr3 84284921 84286805 + 0 NA intron (ENSMUSG00000027993.16, intron 1 of 4) protein_coding-intron (ENSMUSG00000027993.16, intron 1 of 11) 21014 ENSMUSG00000027993.16 ENSMUSG00000027993 ENSMUST00000197845 Trim2 protein_coding Interval_60802 chr15 76859460 76860137 + 0 NA intron (ENSMUSG00000022526.8, intron 2 of 2) protein_coding-intron (ENSMUSG00000022526.8, intron 3 of 3) 11187 ENSMUSG00000022526.8 ENSMUSG00000022526 ENSMUST00000230524 Zfp251 protein_coding Interval_68663 chr16 84044869 84046488 + 0 NA intron (ENSMUSG00000116745.1, intron 3 of 4) lincRNA-intron (ENSMUSG00000116745.1, intron 3 of 4) 11706 ENSMUSG00000116745.1 ENSMUSG00000116745 ENSMUST00000231610 Gm41481 lincRNA Interval_31943 chr11 103987397 103987716 + 0 NA Intergenic Intergenic 7967 ENSMUSG00000062421.13 ENSMUSG00000062421 ENSMUST00000154089 Arf2 protein_coding Interval_42149 chr13 9189262 9189670 + 0 NA Intergenic Intergenic -34071 ENSMUSG00000113936.1 ENSMUSG00000113936 ENSMUST00000222096 Gm8784 processed_pseudogene Interval_55830 chr14 101174463 101174989 + 0 NA Intergenic Intergenic 25604 ENSMUSG00000042888.10 ENSMUSG00000042888 ENSMUST00000187304 Prr30 protein_coding Interval_72648 chr17 31301963 31302597 + 0 NA intron (ENSMUSG00000024036.16, intron 1 of 6) protein_coding-intron (ENSMUSG00000024036.16, intron 2 of 19) -5591 ENSMUSG00000118295.1 ENSMUSG00000118295 ENSMUST00000236752 Gm8437 transcribed_processed_pseudogene Interval_32313 chr11 106832191 106832381 + 0 NA intron (ENSMUSG00000018363.16, intron 15 of 19) protein_coding-intron (ENSMUSG00000018363.16, intron 14 of 18) 14452 ENSMUSG00000018372.13 ENSMUSG00000018372 ENSMUST00000124898 Cep95 protein_coding Interval_100370 chr2 168683475 168684103 + 0 NA exon (ENSMUSG00000027546.15, exon 8 of 28) protein_coding-exon (ENSMUSG00000027546.15, exon 8 of 28) -43030 ENSMUSG00000105496.1 ENSMUSG00000105496 ENSMUST00000200215 Mir7004 miRNA Interval_33827 chr11 118788072 118788575 + 0 NA intron (ENSMUSG00000025576.17, intron 2 of 14) protein_coding-intron (ENSMUSG00000025576.17, intron 2 of 14) -3049 ENSMUSG00000085059.1 ENSMUSG00000085059 ENSMUST00000146016 Gm11750 lincRNA Interval_117635 chr4 125162561 125163349 + 0 NA Intergenic Intergenic -40435 ENSMUSG00000042677.7 ENSMUSG00000042677 ENSMUST00000131685 Zc3h12a protein_coding Interval_100794 chr2 172558787 172559329 + 0 NA TTS (ENSMUSG00000028640.11) protein_coding-TTS (ENSMUSG00000028640.11) 8067 ENSMUSG00000028640.11 ENSMUSG00000028640 ENSMUST00000142633 Tfap2c protein_coding Interval_28364 chr11 75394441 75394679 + 0 NA intron (ENSMUSG00000018809.2, intron 5 of 10) protein_coding-intron (ENSMUSG00000018809.2, intron 5 of 10) 23436 ENSMUSG00000000753.15 ENSMUSG00000000753 ENSMUST00000155009 Serpinf1 protein_coding Interval_76273 chr17 78655186 78655384 + 0 NA exon (ENSMUSG00000024077.15, exon 16 of 16) protein_coding-exon (ENSMUSG00000024077.15, exon 16 of 16) 81357 ENSMUSG00000024076.10 ENSMUSG00000024076 ENSMUST00000232864 Vit protein_coding Interval_84426 chr19 10821217 10822007 + 0 NA intron (ENSMUSG00000024670.17, intron 1 of 5) protein_coding-intron (ENSMUSG00000024670.17, intron 1 of 11) 8314 ENSMUSG00000024670.17 ENSMUSG00000024670 ENSMUST00000236355 Cd6 protein_coding Interval_82850 chr18 77487751 77488063 + 0 NA intron (ENSMUSG00000025427.15, intron 1 of 4) protein_coding-intron (ENSMUSG00000025427.15, intron 1 of 7) -20759 ENSMUSG00000025427.15 ENSMUSG00000025427 ENSMUST00000182146 Rnf165 protein_coding Interval_167243 chr9 66624704 66624905 + 0 NA Intergenic Intergenic -31798 ENSMUSG00000032376.12 ENSMUSG00000032376 ENSMUST00000139952 Usp3 protein_coding Interval_26700 chr11 59814343 59814859 + 0 NA intron (ENSMUSG00000087249.1, intron 1 of 1) antisense-intron (ENSMUSG00000087249.1, intron 1 of 1) 1464 ENSMUSG00000088950.1 ENSMUSG00000088950 ENSMUST00000158325 Gm24939 rRNA Interval_83515 chr18 88735628 88736317 + 0 NA intron (ENSMUSG00000056153.15, intron 6 of 7) protein_coding-intron (ENSMUSG00000056153.15, intron 6 of 7) -77358 ENSMUSG00000118247.1 ENSMUSG00000118247 ENSMUST00000235328 Gm7662 processed_pseudogene Interval_13365 chr10 17229886 17230844 + 0 NA Intergenic Intergenic 91246 ENSMUSG00000112478.1 ENSMUSG00000112478 ENSMUST00000219259 Gm47761 lincRNA Interval_62913 chr15 97849231 97850881 + 0 NA Intergenic Intergenic -18562 ENSMUSG00000022475.19 ENSMUSG00000022475 ENSMUST00000134258 Hdac7 protein_coding Interval_16723 chr10 67213660 67214869 + 0 NA intron (ENSMUSG00000037876.17, intron 3 of 25) protein_coding-intron (ENSMUSG00000037876.17, intron 3 of 25) 21697 ENSMUSG00000089498.1 ENSMUSG00000089498 ENSMUST00000158873 Gm26359 snRNA Interval_104219 chr3 60855153 60856600 + 0 NA Intergenic Intergenic -4831 ENSMUSG00000102490.1 ENSMUSG00000102490 ENSMUST00000195595 Gm36985 processed_pseudogene Interval_85914 chr19 33007713 33009161 + 0 NA Intergenic Intergenic -28374 ENSMUSG00000117664.1 ENSMUSG00000117664 ENSMUST00000236569 Gm36860 lincRNA Interval_173997 chrX 127542665 127543157 + 0 NA Intergenic Intergenic -95995 ENSMUSG00000082382.1 ENSMUSG00000082382 ENSMUST00000122289 Gm14970 processed_pseudogene Interval_24054 chr11 29812665 29813079 + 0 NA intron (ENSMUSG00000044072.14, intron 3 of 3) protein_coding-intron (ENSMUSG00000044072.14, intron 16 of 41) -9773 ENSMUSG00000044072.14 ENSMUSG00000044072 ENSMUST00000109452 Eml6 protein_coding Interval_140690 chr6 120601497 120601741 + 0 NA Intergenic Intergenic -21443 ENSMUSG00000107580.1 ENSMUSG00000107580 ENSMUST00000204159 Gm44124 TEC Interval_91010 chr2 34177804 34178142 + 0 NA intron (ENSMUSG00000038718.15, intron 5 of 5) protein_coding-intron (ENSMUSG00000038718.15, intron 6 of 8) -66529 ENSMUSG00000103413.1 ENSMUSG00000103413 ENSMUST00000147871 Gm38389 lincRNA Interval_15537 chr10 50900403 50901595 + 0 NA intron (ENSMUSG00000019913.4, intron 1 of 10) protein_coding-intron (ENSMUSG00000019913.4, intron 1 of 10) 6245 ENSMUSG00000019913.4 ENSMUSG00000019913 ENSMUST00000020071 Sim1 protein_coding Interval_380 chr1 4777773 4779352 + 0 NA exon (ENSMUSG00000102275.1, exon 1 of 1) TEC-exon (ENSMUSG00000102275.1, exon 1 of 1) 650 ENSMUSG00000102275.1 ENSMUSG00000102275 ENSMUST00000195445 Gm37144 TEC Interval_16483 chr10 63125459 63125754 + 0 NA intron (ENSMUSG00000020067.8, intron 15 of 19) protein_coding-intron (ENSMUSG00000020067.8, intron 15 of 19) -2922 ENSMUSG00000020067.8 ENSMUSG00000020067 ENSMUST00000218978 Mypn protein_coding Interval_105372 chr3 85618624 85619370 + 0 NA exon (ENSMUSG00000028085.12, exon 9 of 13) protein_coding-exon (ENSMUSG00000028085.12, exon 9 of 13) 44865 ENSMUSG00000028085.12 ENSMUSG00000028085 ENSMUST00000029726 Gatb protein_coding Interval_86845 chr19 44320144 44320386 + 0 NA Intergenic Intergenic 6493 ENSMUSG00000117957.1 ENSMUSG00000117957 ENSMUST00000238052 Gm50334 lincRNA Interval_156235 chr8 46311167 46311764 + 0 NA intron (ENSMUSG00000110179.1, intron 4 of 4) lincRNA-intron (ENSMUSG00000110179.1, intron 4 of 4) -2336 ENSMUSG00000109743.1 ENSMUSG00000109743 ENSMUST00000209943 Gm45255 TEC Interval_126579 chr5 90372409 90373018 + 0 NA Intergenic Intergenic 6093 ENSMUSG00000054945.4 ENSMUSG00000054945 ENSMUST00000068250 Gm9958 bidirectional_promoter_lncRNA Interval_10898 chr1 176730977 176731310 + 0 NA Intergenic Intergenic 15839 ENSMUSG00000103634.1 ENSMUSG00000103634 ENSMUST00000192113 3110062G12Rik TEC Interval_1388 chr1 21247557 21248695 + 0 NA intron (ENSMUSG00000025934.15, intron 2 of 7) protein_coding-intron (ENSMUSG00000025934.15, intron 1 of 6) -5395 ENSMUSG00000025934.15 ENSMUSG00000025934 ENSMUST00000190711 Gsta3 protein_coding Interval_76624 chr17 82880806 82881390 + 0 NA Intergenic Intergenic -74898 ENSMUSG00000117472.1 ENSMUSG00000117472 ENSMUST00000234284 Gm4601 processed_pseudogene Interval_79077 chr18 24375063 24376189 + 0 NA Intergenic Intergenic 36260 ENSMUSG00000117570.1 ENSMUSG00000117570 ENSMUST00000234938 Gm38410 lincRNA Interval_104573 chr3 68424867 68425375 + 0 NA intron (ENSMUSG00000027777.15, intron 1 of 6) protein_coding-intron (ENSMUSG00000027777.15, intron 1 of 7) 17338 ENSMUSG00000103345.1 ENSMUSG00000103345 ENSMUST00000195366 Gm10723 TEC Interval_76393 chr17 79880741 79881903 + 0 NA intron (ENSMUSG00000059811.13, intron 1 of 1) protein_coding-intron (ENSMUSG00000059811.13, intron 1 of 12) -25192 ENSMUSG00000059811.13 ENSMUSG00000059811 ENSMUST00000222243 Atl2 protein_coding Interval_122404 chr5 22120153 22121467 + 0 NA intron (ENSMUSG00000042453.14, intron 8 of 24) protein_coding-intron (ENSMUSG00000042453.14, intron 8 of 63) 160772 ENSMUSG00000089910.1 ENSMUSG00000089910 ENSMUST00000159629 Gm16113 processed_pseudogene Interval_119780 chr4 139944454 139945146 + 0 NA Intergenic Intergenic -1281 ENSMUSG00000085928.1 ENSMUSG00000085928 ENSMUST00000138672 4933427I22Rik lincRNA Interval_159302 chr8 93021796 93022007 + 0 NA intron (ENSMUSG00000071047.5, intron 12 of 13) protein_coding-intron (ENSMUSG00000071047.5, intron 12 of 13) 10282 ENSMUSG00000109651.1 ENSMUSG00000109651 ENSMUST00000209831 Gm45463 processed_transcript Interval_32875 chr11 112664406 112664675 + 0 NA TTS (ENSMUSG00000041674.16) processed_transcript-TTS (ENSMUSG00000041674.16) 46800 ENSMUSG00000041674.16 ENSMUSG00000041674 ENSMUST00000148724 BC006965 processed_transcript Interval_124367 chr5 44799240 44799620 + 0 NA exon (ENSMUSG00000039706.11, exon 1 of 8) protein_coding-exon (ENSMUSG00000039706.11, exon 1 of 8) 189 ENSMUSG00000039706.11 ENSMUSG00000039706 ENSMUST00000198894 Ldb2 protein_coding Interval_70965 chr17 16891266 16891518 + 0 NA TTS (ENSMUSG00000116621.1) unprocessed_pseudogene-TTS (ENSMUSG00000116621.1) 2037 ENSMUSG00000116621.1 ENSMUSG00000116621 ENSMUST00000232084 Gm7483 unprocessed_pseudogene Interval_34216 chr11 121345115 121345577 + 0 NA intron (ENSMUSG00000025173.13, intron 2 of 6) protein_coding-intron (ENSMUSG00000025173.13, intron 2 of 9) -4158 ENSMUSG00000025173.13 ENSMUSG00000025173 ENSMUST00000127373 Wdr45b protein_coding Interval_20188 chr10 115529919 115530211 + 0 NA intron (ENSMUSG00000020140.15, intron 1 of 16) protein_coding-intron (ENSMUSG00000020140.15, intron 1 of 17) -39921 ENSMUSG00000092210.1 ENSMUSG00000092210 ENSMUST00000173620 A930009A15Rik protein_coding Interval_56895 chr14 122927376 122927928 + 0 NA TTS (ENSMUSG00000075463.3) processed_transcript-TTS (ENSMUSG00000075463.3) -5730 ENSMUSG00000041594.18 ENSMUSG00000041594 ENSMUST00000141478 Tmtc4 protein_coding Interval_161798 chr8 122865063 122865512 + 0 NA intron (ENSMUSG00000031962.6, intron 11 of 13) protein_coding-intron (ENSMUSG00000031962.6, intron 11 of 13) -5262 ENSMUSG00000110440.1 ENSMUSG00000110440 ENSMUST00000212728 Gm45894 antisense Interval_95773 chr2 116063911 116064211 + 0 NA intron (ENSMUSG00000027210.20, intron 1 of 12) protein_coding-intron (ENSMUSG00000027210.20, intron 1 of 11) 3383 ENSMUSG00000086328.1 ENSMUSG00000086328 ENSMUST00000140185 2700033N17Rik lincRNA Interval_12439 chr1 193477290 193477628 + 0 NA Intergenic Intergenic 2169 ENSMUSG00000102648.1 ENSMUSG00000102648 ENSMUST00000191762 Gm38022 processed_pseudogene Interval_1192 chr1 16798120 16799160 + 0 NA Intergenic Intergenic -28502 ENSMUSG00000091020.3 ENSMUSG00000091020 ENSMUST00000071842 Gm5828 processed_pseudogene Interval_111445 chr4 21721461 21721698 + 0 NA Intergenic Intergenic -6179 ENSMUSG00000028252.20 ENSMUSG00000028252 ENSMUST00000133712 Ccnc protein_coding Interval_132717 chr5 147350132 147350339 + 0 NA intron (ENSMUSG00000042817.15, intron 16 of 23) protein_coding-intron (ENSMUSG00000042817.15, intron 16 of 23) -23901 ENSMUSG00000106939.1 ENSMUSG00000106939 ENSMUST00000201667 Gm29778 processed_pseudogene Interval_56949 chr14 123969018 123969258 + 0 NA intron (ENSMUSG00000032925.16, intron 9 of 10) protein_coding-intron (ENSMUSG00000032925.16, intron 9 of 10) -10072 ENSMUSG00000101445.1 ENSMUSG00000101445 ENSMUST00000186300 Gm28932 antisense Interval_51665 chr14 31221453 31221701 + 0 NA exon (ENSMUSG00000021904.6, exon 5 of 16) protein_coding-exon (ENSMUSG00000021904.6, exon 5 of 16) 3717 ENSMUSG00000021904.6 ENSMUSG00000021904 ENSMUST00000090180 Sema3g protein_coding Interval_8723 chr1 150008775 150011034 + 0 NA Intergenic Intergenic 14352 ENSMUSG00000099701.1 ENSMUSG00000099701 ENSMUST00000190706 Gm19136 processed_pseudogene Interval_108657 chr3 129847460 129847922 + 0 NA intron (ENSMUSG00000058952.12, intron 2 of 3) protein_coding-intron (ENSMUSG00000058952.12, intron 1 of 13) 11807 ENSMUSG00000058952.12 ENSMUSG00000058952 ENSMUST00000077918 Cfi protein_coding Interval_147385 chr7 66327485 66327763 + 0 NA intron (ENSMUSG00000015133.17, intron 6 of 33) protein_coding-intron (ENSMUSG00000015133.17, intron 6 of 33) 18429 ENSMUSG00000109119.1 ENSMUSG00000109119 ENSMUST00000207140 Gm44752 antisense Interval_151474 chr7 122935585 122936037 + 0 NA Intergenic Intergenic 34239 ENSMUSG00000108452.1 ENSMUSG00000108452 ENSMUST00000205998 4930413G21Rik TEC Interval_58620 chr15 36607925 36609949 + 0 NA promoter-TSS (ENSMUSG00000022283.15) protein_coding-promoter-TSS (ENSMUSG00000022283.15) -3471 ENSMUSG00000022283.15 ENSMUSG00000022283 ENSMUST00000226496 Pabpc1 protein_coding Interval_154576 chr8 20996942 20997536 + 0 NA Intergenic Intergenic -28306 ENSMUSG00000074447.2 ENSMUSG00000074447 ENSMUST00000076754 Defa21 protein_coding Interval_81112 chr18 53956643 53956928 + 0 NA Intergenic Intergenic -27536 ENSMUSG00000069376.2 ENSMUSG00000069376 ENSMUST00000091897 Gm5507 processed_pseudogene Interval_85690 chr19 29679566 29680903 + 0 NA Intergenic Intergenic -17700 ENSMUSG00000024806.4 ENSMUSG00000024806 ENSMUST00000235954 Mlana protein_coding Interval_9801 chr1 162529280 162529837 + 0 NA Intergenic Intergenic 18971 ENSMUSG00000026694.19 ENSMUSG00000026694 ENSMUST00000195027 Eef1aknmt protein_coding Interval_110613 chr4 4717622 4717941 + 0 NA Intergenic Intergenic -11792 ENSMUSG00000095971.1 ENSMUSG00000095971 ENSMUST00000180325 Gm26436 snoRNA Interval_134517 chr6 29294446 29295492 + 0 NA Intergenic Intergenic 13826 ENSMUSG00000079652.8 ENSMUSG00000079652 ENSMUST00000167608 Fam71f2 protein_coding Interval_117710 chr4 125704879 125705461 + 0 NA exon (ENSMUSG00000001985.9, exon 15 of 16) protein_coding-exon (ENSMUSG00000001985.9, exon 15 of 16) 200421 ENSMUSG00000094403.1 ENSMUSG00000094403 ENSMUST00000102081 Mir692-2 miRNA Interval_166920 chr9 63942794 63943036 + 0 NA Intergenic Intergenic -15166 ENSMUSG00000111058.1 ENSMUSG00000111058 ENSMUST00000214827 Gm36033 lincRNA Interval_150522 chr7 111834197 111835016 + 0 NA Intergenic Intergenic 23949 ENSMUSG00000110065.1 ENSMUSG00000110065 ENSMUST00000211213 Gm45588 processed_pseudogene Interval_40931 chr12 109993393 109993953 + 0 NA intron (ENSMUSG00000113063.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000113063.1, intron 1 of 2) 30200 ENSMUSG00000113063.1 ENSMUSG00000113063 ENSMUST00000222974 Gm34667 lincRNA Interval_82372 chr18 73216805 73217473 + 0 NA Intergenic Intergenic -296049 ENSMUSG00000118316.1 ENSMUSG00000118316 ENSMUST00000236243 Gm31908 lincRNA Interval_109334 chr3 139059273 139060722 + 0 NA intron (ENSMUSG00000028149.12, intron 1 of 12) protein_coding-intron (ENSMUSG00000028149.12, intron 1 of 13) 15151 ENSMUSG00000028149.12 ENSMUSG00000028149 ENSMUST00000195953 Rap1gds1 protein_coding Interval_90019 chr2 27373289 27373550 + 0 NA intron (ENSMUSG00000009621.18, intron 1 of 29) protein_coding-intron (ENSMUSG00000009621.18, intron 2 of 27) -28433 ENSMUSG00000076364.1 ENSMUSG00000076364 ENSMUST00000102409 Gm24049 miRNA Interval_47794 chr13 92896888 92897144 + 0 NA Intergenic Intergenic -1270 ENSMUSG00000114823.1 ENSMUSG00000114823 ENSMUST00000225872 Gm31630 processed_transcript Interval_167189 chr9 66049844 66050036 + 0 NA Intergenic Intergenic -10282 ENSMUSG00000032383.7 ENSMUSG00000032383 ENSMUST00000034947 Ppib protein_coding Interval_92139 chr2 53952005 53952226 + 0 NA Intergenic Intergenic 133437 ENSMUSG00000075334.2 ENSMUSG00000075334 ENSMUST00000100089 Rprm protein_coding Interval_25295 chr11 46164583 46164835 + 0 NA intron (ENSMUSG00000020411.2, intron 1 of 5) protein_coding-intron (ENSMUSG00000020411.2, intron 1 of 5) 1799 ENSMUSG00000020411.2 ENSMUSG00000020411 ENSMUST00000020679 Nipal4 protein_coding Interval_23680 chr11 24463836 24464115 + 0 NA intron (ENSMUSG00000087085.1, intron 2 of 3) lincRNA-intron (ENSMUSG00000087085.1, intron 2 of 3) -17934 ENSMUSG00000086892.1 ENSMUSG00000086892 ENSMUST00000152726 4933430M04Rik lincRNA Interval_41895 chr13 3982298 3983402 + 0 NA Intergenic Intergenic -25608 ENSMUSG00000093010.1 ENSMUSG00000093010 ENSMUST00000175269 Gm22460 miRNA Interval_36297 chr12 40887542 40889141 + 0 NA Intergenic Intergenic -3727 ENSMUSG00000113510.1 ENSMUSG00000113510 ENSMUST00000220981 Gm7239 processed_pseudogene Interval_20278 chr10 116622099 116622569 + 0 NA Intergenic Intergenic -9492 ENSMUSG00000111937.1 ENSMUSG00000111937 ENSMUST00000218130 Gm46203 processed_pseudogene Interval_131515 chr5 137667710 137668176 + 0 NA intron (ENSMUSG00000029722.15, intron 1 of 10) protein_coding-intron (ENSMUSG00000029722.15, intron 1 of 11) -3627 ENSMUSG00000029722.15 ENSMUSG00000029722 ENSMUST00000138604 Agfg2 protein_coding Interval_82235 chr18 69458132 69459272 + 0 NA intron (ENSMUSG00000053477.17, intron 1 of 17) protein_coding-intron (ENSMUSG00000053477.17, intron 4 of 20) -63748 ENSMUSG00000053477.17 ENSMUSG00000053477 ENSMUST00000136019 Tcf4 protein_coding Interval_92209 chr2 56510982 56511205 + 0 NA Intergenic Intergenic -274718 ENSMUSG00000098437.1 ENSMUSG00000098437 ENSMUST00000184814 Mir195b miRNA Interval_25203 chr11 45328598 45328836 + 0 NA Intergenic Intergenic -32327 ENSMUSG00000104099.1 ENSMUSG00000104099 ENSMUST00000195753 Gm37312 TEC Interval_62147 chr15 88174514 88174984 + 0 NA Intergenic Intergenic 101005 ENSMUSG00000116350.1 ENSMUSG00000116350 ENSMUST00000230760 Gm35772 lincRNA Interval_110607 chr4 4619535 4620771 + 0 NA Intergenic Intergenic -91434 ENSMUSG00000085155.3 ENSMUSG00000085155 ENSMUST00000136880 Gm11780 processed_pseudogene Interval_27233 chr11 64522840 64523079 + 0 NA TTS (ENSMUSG00000047759.6) protein_coding-TTS (ENSMUSG00000047759.6) 67681 ENSMUSG00000080430.1 ENSMUSG00000080430 ENSMUST00000116780 Gm24275 miRNA Interval_78392 chr18 12452748 12453392 + 0 NA intron (ENSMUSG00000024421.16, intron 18 of 74) protein_coding-intron (ENSMUSG00000024421.16, intron 18 of 74) 46392 ENSMUSG00000100090.1 ENSMUSG00000100090 ENSMUST00000187766 Gm29199 processed_pseudogene Interval_66474 chr16 34085953 34086378 + 0 NA intron (ENSMUSG00000061751.16, intron 33 of 48) protein_coding-intron (ENSMUSG00000061751.16, intron 34 of 59) 9863 ENSMUSG00000061751.16 ENSMUSG00000061751 ENSMUST00000132569 Kalrn protein_coding Interval_41110 chr12 111249827 111250072 + 0 NA intron (ENSMUSG00000021277.16, intron 6 of 9) protein_coding-intron (ENSMUSG00000021277.16, intron 7 of 11) 1466 ENSMUSG00000021277.16 ENSMUSG00000021277 ENSMUST00000143395 Traf3 protein_coding Interval_55912 chr14 102024325 102025502 + 0 NA Intergenic Intergenic -42150 ENSMUSG00000115584.1 ENSMUSG00000115584 ENSMUST00000226515 Gm5854 processed_pseudogene Interval_136651 chr6 57052327 57053365 + 0 NA Intergenic Intergenic -13941 ENSMUSG00000091541.2 ENSMUSG00000091541 ENSMUST00000171186 Vmn1r9 protein_coding Interval_151039 chr7 118102213 118106228 + 0 NA TTS (ENSMUSG00000008683.16) protein_coding-TTS (ENSMUSG00000008683.16) 11036 ENSMUSG00000008683.16 ENSMUSG00000008683 ENSMUST00000128482 Rps15a protein_coding Interval_31486 chr11 100962329 100962615 + 0 NA intron (ENSMUSG00000004044.9, intron 1 of 1) protein_coding-intron (ENSMUSG00000004044.9, intron 1 of 1) 8079 ENSMUSG00000004044.9 ENSMUSG00000004044 ENSMUST00000132934 Cavin1 protein_coding Interval_2346 chr1 38251459 38251761 + 0 NA intron (ENSMUSG00000037138.18, intron 11 of 22) protein_coding-intron (ENSMUSG00000037138.18, intron 11 of 22) 11910 ENSMUSG00000085391.1 ENSMUSG00000085391 ENSMUST00000133299 Gm16150 antisense Interval_56179 chr14 110979216 110979440 + 0 NA Intergenic Intergenic 200100 ENSMUSG00000115349.1 ENSMUSG00000115349 ENSMUST00000228159 Gm9348 processed_pseudogene Interval_1312 chr1 20302280 20303272 + 0 NA intron (ENSMUSG00000043760.16, intron 50 of 66) protein_coding-intron (ENSMUSG00000043760.16, intron 50 of 66) -53676 ENSMUSG00000089914.2 ENSMUSG00000089914 ENSMUST00000161509 4930486I03Rik antisense Interval_61794 chr15 84191835 84192879 + 0 NA exon (ENSMUSG00000022437.7, exon 1 of 15) protein_coding-exon (ENSMUSG00000022437.7, exon 1 of 15) 6343 ENSMUSG00000041653.5 ENSMUSG00000041653 ENSMUST00000230926 Pnpla3 protein_coding Interval_28707 chr11 77853126 77853933 + 0 NA promoter-TSS (ENSMUSG00000000631.20) protein_coding-promoter-TSS (ENSMUSG00000000631.20) 31015 ENSMUSG00000017453.4 ENSMUSG00000017453 ENSMUST00000155401 Pipox protein_coding Interval_31993 chr11 104342055 104342367 + 0 NA promoter-TSS (ENSMUSG00000018412.16) protein_coding-promoter-TSS (ENSMUSG00000018412.16) -82850 ENSMUSG00000085134.1 ENSMUSG00000085134 ENSMUST00000137561 Gm11659 antisense Interval_47631 chr13 90403225 90403513 + 0 NA intron (ENSMUSG00000114204.1, intron 2 of 3) lincRNA-intron (ENSMUSG00000114204.1, intron 2 of 3) 14731 ENSMUSG00000114204.1 ENSMUSG00000114204 ENSMUST00000225049 Gm47520 lincRNA Interval_105142 chr3 82433773 82434123 + 0 NA Intergenic Intergenic 53875 ENSMUSG00000033900.13 ENSMUSG00000033900 ENSMUST00000195793 Map9 protein_coding Interval_71572 chr17 24620318 24621154 + 0 NA intron (ENSMUSG00000002496.10, intron 14 of 39) protein_coding-intron (ENSMUSG00000002496.10, intron 14 of 39) -14226 ENSMUSG00000002496.10 ENSMUSG00000002496 ENSMUST00000227509 Tsc2 protein_coding Interval_80029 chr18 36734589 36735706 + 0 NA promoter-TSS (ENSMUSG00000006850.8) protein_coding-promoter-TSS (ENSMUSG00000006850.8) 72 ENSMUSG00000006850.8 ENSMUSG00000006850 ENSMUST00000237559 Tmco6 protein_coding Interval_89458 chr2 20770291 20770543 + 0 NA intron (ENSMUSG00000036617.17, intron 4 of 7) protein_coding-intron (ENSMUSG00000036617.17, intron 9 of 18) -57183 ENSMUSG00000086418.1 ENSMUSG00000086418 ENSMUST00000137186 Gm13362 antisense Interval_60746 chr15 76496387 76496727 + 0 NA exon (ENSMUSG00000022556.11, exon 3 of 12) protein_coding-exon (ENSMUSG00000022556.11, exon 3 of 12) -3090 ENSMUSG00000022556.11 ENSMUSG00000022556 ENSMUST00000228688 Hsf1 protein_coding Interval_67473 chr16 49330492 49330722 + 0 NA Intergenic Intergenic -32709 ENSMUSG00000058176.3 ENSMUSG00000058176 ENSMUST00000080694 Gm5407 processed_pseudogene Interval_101368 chr2 180830875 180831665 + 0 NA intron (ENSMUSG00000086166.1, intron 3 of 3) lincRNA-intron (ENSMUSG00000086166.1, intron 3 of 3) -5211 ENSMUSG00000085428.1 ENSMUSG00000085428 ENSMUST00000139338 Gm14344 lincRNA Interval_57734 chr15 17310074 17310341 + 0 NA Intergenic Intergenic -233268 ENSMUSG00000115182.1 ENSMUSG00000115182 ENSMUST00000227358 Gm49128 lincRNA Interval_132616 chr5 146764975 146765697 + 0 NA intron (ENSMUSG00000029640.17, intron 2 of 8) protein_coding-intron (ENSMUSG00000029640.17, intron 2 of 8) -6888 ENSMUSG00000029640.17 ENSMUSG00000029640 ENSMUST00000124009 Usp12 protein_coding Interval_58966 chr15 41120594 41120855 + 0 NA Intergenic Intergenic -52763 ENSMUSG00000048559.5 ENSMUSG00000048559 ENSMUST00000060066 4930555K19Rik processed_pseudogene Interval_159099 chr8 90520185 90520933 + 0 NA Intergenic Intergenic 154399 ENSMUSG00000109672.1 ENSMUSG00000109672 ENSMUST00000211205 Gm45639 lincRNA Interval_143537 chr7 12292715 12293276 + 0 NA Intergenic Intergenic -7435 ENSMUSG00000058132.5 ENSMUSG00000058132 ENSMUST00000191002 Vmn1r82 protein_coding Interval_15147 chr10 42901952 42902554 + 0 NA promoter-TSS (ENSMUSG00000044770.14) protein_coding-promoter-TSS (ENSMUSG00000044770.14) -13456 ENSMUSG00000111086.1 ENSMUSG00000111086 ENSMUST00000214070 Gm48671 lincRNA Interval_3770 chr1 62984197 62984958 + 0 NA intron (ENSMUSG00000040865.15, intron 9 of 12) protein_coding-intron (ENSMUSG00000040865.15, intron 9 of 12) -41165 ENSMUSG00000104991.1 ENSMUSG00000104991 ENSMUST00000199516 Gm44468 miRNA Interval_60871 chr15 77273730 77274813 + 0 NA intron (ENSMUSG00000033565.18, intron 1 of 13) protein_coding-intron (ENSMUSG00000033565.18, intron 1 of 12) -31720 ENSMUSG00000089242.1 ENSMUSG00000089242 ENSMUST00000158617 Gm24056 snRNA Interval_42205 chr13 9884577 9885297 + 0 NA intron (ENSMUSG00000046159.16, intron 4 of 4) protein_coding-intron (ENSMUSG00000046159.16, intron 4 of 4) -7973 ENSMUSG00000113146.1 ENSMUSG00000113146 ENSMUST00000221304 Gm47406 processed_pseudogene Interval_82645 chr18 75597820 75598387 + 0 NA intron (ENSMUSG00000052928.9, intron 6 of 11) protein_coding-intron (ENSMUSG00000052928.9, intron 6 of 11) 39170 ENSMUSG00000052928.9 ENSMUSG00000052928 ENSMUST00000235147 Ctif protein_coding Interval_10065 chr1 165567201 165568837 + 0 NA TTS (ENSMUSG00000026567.16) protein_coding-TTS (ENSMUSG00000026567.16) 3957 ENSMUSG00000089291.1 ENSMUSG00000089291 ENSMUST00000158666 Gm23208 snoRNA Interval_28023 chr11 72311430 72312089 + 0 NA intron (ENSMUSG00000040483.15, intron 5 of 5) protein_coding-intron (ENSMUSG00000040483.15, intron 3 of 3) -2685 ENSMUSG00000070388.3 ENSMUSG00000070388 ENSMUST00000108504 Fbxo39 protein_coding Interval_71165 chr17 20609293 20609482 + 0 NA Intergenic Intergenic -12964 ENSMUSG00000091259.2 ENSMUSG00000091259 ENSMUST00000233630 Vmn2r110 protein_coding Interval_42161 chr13 9371035 9371292 + 0 NA intron (ENSMUSG00000048264.16, intron 1 of 36) protein_coding-intron (ENSMUSG00000048264.16, intron 1 of 38) 19135 ENSMUSG00000113869.1 ENSMUSG00000113869 ENSMUST00000222099 Gm48869 processed_pseudogene Interval_115429 chr4 98876106 98876669 + 0 NA Intergenic Intergenic 20773 ENSMUSG00000084188.1 ENSMUSG00000084188 ENSMUST00000117920 Gm12851 processed_pseudogene Interval_90296 chr2 29636040 29636308 + 0 NA intron (ENSMUSG00000039844.20, intron 1 of 24) protein_coding-intron (ENSMUSG00000039844.20, intron 1 of 25) -7641 ENSMUSG00000039844.20 ENSMUSG00000039844 ENSMUST00000123953 Rapgef1 protein_coding Interval_39002 chr12 84388907 84389216 + 0 NA intron (ENSMUSG00000021236.16, intron 5 of 14) protein_coding-intron (ENSMUSG00000021236.16, intron 5 of 14) 18059 ENSMUSG00000021235.13 ENSMUSG00000021235 ENSMUST00000156592 Coq6 protein_coding Interval_106601 chr3 97642714 97642992 + 0 NA intron (ENSMUSG00000028088.14, intron 6 of 8) protein_coding-intron (ENSMUSG00000028088.14, intron 6 of 8) 13970 ENSMUSG00000028088.14 ENSMUSG00000028088 ENSMUST00000140283 Fmo5 protein_coding Interval_47941 chr13 94520061 94520300 + 0 NA intron (ENSMUSG00000021686.6, intron 6 of 11) protein_coding-intron (ENSMUSG00000021686.6, intron 22 of 26) 3018 ENSMUSG00000084423.1 ENSMUSG00000084423 ENSMUST00000122474 Gm25109 miRNA Interval_153838 chr8 9482764 9483068 + 0 NA intron (ENSMUSG00000079157.4, intron 3 of 3) protein_coding-intron (ENSMUSG00000079157.4, intron 1 of 2) 23824 ENSMUSG00000109551.1 ENSMUSG00000109551 ENSMUST00000208065 4930435N07Rik TEC Interval_136432 chr6 54402235 54402510 + 0 NA intron (ENSMUSG00000073067.10, intron 2 of 13) processed_transcript-intron (ENSMUSG00000073067.10, intron 2 of 13) -50511 ENSMUSG00000086040.8 ENSMUSG00000086040 ENSMUST00000131043 Wipf3 protein_coding Interval_69042 chr16 90271581 90271885 + 0 NA intron (ENSMUSG00000022983.16, intron 1 of 19) protein_coding-intron (ENSMUSG00000022983.16, intron 1 of 19) 12770 ENSMUSG00000022983.16 ENSMUSG00000022983 ENSMUST00000231776 Scaf4 protein_coding Interval_92379 chr2 59377681 59379504 + 0 NA Intergenic Intergenic 8879 ENSMUSG00000087455.7 ENSMUSG00000087455 ENSMUST00000155111 5330411J11Rik processed_transcript Interval_109381 chr3 141001061 141001782 + 0 NA Intergenic Intergenic 49545 ENSMUSG00000106540.1 ENSMUSG00000106540 ENSMUST00000196030 4930590L14Rik lincRNA Interval_83573 chr18 89958816 89959246 + 0 NA Intergenic Intergenic -14719 ENSMUSG00000098126.1 ENSMUSG00000098126 ENSMUST00000182270 Gm27037 processed_pseudogene Interval_171210 chr9 115235412 115235651 + 0 NA Intergenic Intergenic 35133 ENSMUSG00000097967.1 ENSMUSG00000097967 ENSMUST00000182789 Gm27002 sense_intronic Interval_51616 chr14 30743927 30744542 + 0 NA intron (ENSMUSG00000006527.16, intron 2 of 18) protein_coding-intron (ENSMUSG00000006527.16, intron 1 of 20) 27743 ENSMUSG00000006527.16 ENSMUSG00000006527 ENSMUST00000227445 Sfmbt1 protein_coding Interval_3747 chr1 62742203 62742450 + 0 NA intron (ENSMUSG00000025969.15, intron 3 of 16) protein_coding-intron (ENSMUSG00000025969.15, intron 3 of 15) -24253 ENSMUSG00000100811.1 ENSMUSG00000100811 ENSMUST00000189205 Gm29083 antisense Interval_74817 chr17 56708376 56710884 + 0 NA exon (ENSMUSG00000002372.9, exon 15 of 15) protein_coding-exon (ENSMUSG00000002372.9, exon 15 of 15) -8153 ENSMUSG00000002379.7 ENSMUSG00000002379 ENSMUST00000233233 Ndufa11 protein_coding Interval_18215 chr10 83738741 83739565 + 0 NA exon (ENSMUSG00000087651.3, exon 2 of 2) protein_coding-exon (ENSMUSG00000087651.3, exon 2 of 2) 1244 ENSMUSG00000087651.3 ENSMUSG00000087651 ENSMUST00000218623 1500009L16Rik protein_coding Interval_5141 chr1 86007495 86008095 + 0 NA Intergenic Intergenic 8091 ENSMUSG00000099342.1 ENSMUSG00000099342 ENSMUST00000187562 Gm18180 processed_pseudogene Interval_37507 chr12 69436546 69437726 + 0 NA Intergenic Intergenic 38411 ENSMUSG00000113035.1 ENSMUSG00000113035 ENSMUST00000222980 5830428M24Rik processed_transcript Interval_170560 chr9 108691704 108693216 + 0 NA promoter-TSS (ENSMUSG00000032601.13) protein_coding-promoter-TSS (ENSMUSG00000032601.13) 3 ENSMUSG00000032601.13 ENSMUSG00000032601 ENSMUST00000195263 Prkar2a protein_coding Interval_133381 chr6 4446007 4447164 + 0 NA Intergenic Intergenic 37613 ENSMUSG00000102946.2 ENSMUSG00000102946 ENSMUST00000194970 Gm37883 TEC Interval_96639 chr2 126714189 126715745 + 0 NA intron (ENSMUSG00000027364.14, intron 7 of 8) protein_coding-intron (ENSMUSG00000027363.15, intron 1 of 18) -5410 ENSMUSG00000074846.3 ENSMUSG00000074846 ENSMUST00000188689 Gm10774 processed_pseudogene Interval_40944 chr12 110077970 110078196 + 0 NA intron (ENSMUSG00000113868.1, intron 2 of 2) lincRNA-intron (ENSMUSG00000113868.1, intron 2 of 2) -5737 ENSMUSG00000113042.1 ENSMUSG00000113042 ENSMUST00000220902 Gm47188 TEC Interval_119145 chr4 135837319 135837535 + 0 NA Intergenic Intergenic -16251 ENSMUSG00000081672.1 ENSMUSG00000081672 ENSMUST00000120937 Gm13000 processed_pseudogene Interval_69280 chr16 91860728 91863645 + 0 NA exon (ENSMUSG00000022957.20, exon 1 of 4) protein_coding-exon (ENSMUSG00000022957.20, exon 1 of 4) -41877 ENSMUSG00000022957.20 ENSMUSG00000022957 ENSMUST00000137575 Itsn1 protein_coding Interval_5821 chr1 92187962 92188254 + 0 NA intron (ENSMUSG00000026313.16, intron 1 of 3) protein_coding-intron (ENSMUSG00000026313.16, intron 1 of 3) 7586 ENSMUSG00000026313.16 ENSMUSG00000026313 ENSMUST00000212408 Hdac4 protein_coding Interval_16933 chr10 69997375 69997974 + 0 NA intron (ENSMUSG00000069601.14, intron 37 of 42) protein_coding-intron (ENSMUSG00000069601.14, intron 12 of 16) -177337 ENSMUSG00000048701.13 ENSMUSG00000048701 ENSMUST00000135607 Ccdc6 protein_coding Interval_3760 chr1 62903008 62903544 + 0 NA Intergenic Intergenic -70906 ENSMUSG00000100426.1 ENSMUSG00000100426 ENSMUST00000189802 Gm4208 lincRNA Interval_169466 chr9 97757090 97757631 + 0 NA intron (ENSMUSG00000032452.12, intron 2 of 16) protein_coding-intron (ENSMUSG00000032452.12, intron 2 of 17) 172795 ENSMUSG00000104462.1 ENSMUSG00000104462 ENSMUST00000191863 Gm37661 TEC Interval_96220 chr2 120587674 120587879 + 0 NA intron (ENSMUSG00000027287.14, intron 6 of 7) protein_coding-intron (ENSMUSG00000027287.14, intron 5 of 7) 20053 ENSMUSG00000027287.14 ENSMUSG00000027287 ENSMUST00000130759 Snap23 protein_coding Interval_48634 chr13 100766839 100767437 + 0 NA intron (ENSMUSG00000045273.8, intron 4 of 8) protein_coding-intron (ENSMUSG00000045273.8, intron 4 of 8) -3326 ENSMUSG00000085340.1 ENSMUSG00000085340 ENSMUST00000077495 Gm16335 processed_pseudogene Interval_103436 chr3 41563248 41566355 + 0 NA promoter-TSS (ENSMUSG00000025764.14) protein_coding-promoter-TSS (ENSMUSG00000025764.14) -1103 ENSMUSG00000103843.1 ENSMUSG00000103843 ENSMUST00000192060 Gm31266 antisense Interval_110620 chr4 4792139 4793718 + 0 NA exon (ENSMUSG00000066324.2, exon 1 of 5) protein_coding-exon (ENSMUSG00000066324.2, exon 1 of 5) 427 ENSMUSG00000066324.2 ENSMUSG00000066324 ENSMUST00000084949 Impad1 protein_coding Interval_84836 chr19 17317245 17317590 + 0 NA Intergenic Intergenic -51079 ENSMUSG00000117946.1 ENSMUSG00000117946 ENSMUST00000237419 Gm50280 processed_pseudogene Interval_140366 chr6 117293557 117294627 + 0 NA Intergenic Intergenic -80026 ENSMUSG00000090549.2 ENSMUSG00000090549 ENSMUST00000170447 Rpl28-ps4 processed_pseudogene Interval_42973 chr13 21995435 21997440 + 0 NA Intergenic Intergenic 13305 ENSMUSG00000006179.9 ENSMUSG00000006179 ENSMUST00000130585 Prss16 protein_coding Interval_4208 chr1 71625930 71626122 + 0 NA exon (ENSMUSG00000026193.15, exon 19 of 46) protein_coding-exon (ENSMUSG00000026193.15, exon 19 of 46) -26862 ENSMUSG00000073652.10 ENSMUSG00000073652 ENSMUST00000125934 Apol7d antisense Interval_139197 chr6 97106948 97107220 + 0 NA Intergenic Intergenic -41110 ENSMUSG00000107502.1 ENSMUSG00000107502 ENSMUST00000203184 Gm44065 TEC Interval_102299 chr3 21356220 21356425 + 0 NA Intergenic Intergenic -87232 ENSMUSG00000101897.1 ENSMUSG00000101897 ENSMUST00000190301 Gm29137 lincRNA Interval_103550 chr3 48980349 48980653 + 0 NA Intergenic Intergenic 25779 ENSMUSG00000065018.1 ENSMUSG00000065018 ENSMUST00000083084 Gm23511 snRNA Interval_64540 chr16 13159290 13160898 + 0 NA Intergenic Intergenic 27703 ENSMUSG00000022545.13 ENSMUSG00000022545 ENSMUST00000156393 Ercc4 protein_coding Interval_8953 chr1 152687230 152687756 + 0 NA promoter-TSS (ENSMUSG00000086145.1) sense_intronic-promoter-TSS (ENSMUSG00000086145.1) 8 ENSMUSG00000086145.1 ENSMUSG00000086145 ENSMUST00000139309 Gm15479 sense_intronic Interval_3366 chr1 57476331 57477551 + 0 NA Intergenic Intergenic 9071 ENSMUSG00000088353.1 ENSMUSG00000088353 ENSMUST00000157728 Gm24014 snRNA Interval_159926 chr8 105231022 105234051 + 0 NA intron (ENSMUSG00000031889.9, intron 2 of 13) protein_coding-intron (ENSMUSG00000031889.9, intron 2 of 15) 7330 ENSMUSG00000031889.9 ENSMUSG00000031889 ENSMUST00000133035 D230025D16Rik protein_coding Interval_149795 chr7 101617862 101618075 + 0 NA Intergenic Intergenic -32368 ENSMUSG00000030651.5 ENSMUSG00000030651 ENSMUST00000063920 Art2b protein_coding Interval_141124 chr6 125136912 125137881 + 0 NA exon (ENSMUSG00000038279.10, exon 8 of 16) protein_coding-exon (ENSMUSG00000038279.10, exon 8 of 16) 5363 ENSMUSG00000038279.10 ENSMUSG00000038279 ENSMUST00000204185 Nop2 protein_coding Interval_66927 chr16 38572586 38572947 + 0 NA intron (ENSMUSG00000091238.1, intron 1 of 1) protein_coding-intron (ENSMUSG00000002845.14, intron 2 of 8) 534 ENSMUSG00000091238.1 ENSMUSG00000091238 ENSMUST00000168897 Gm17103 antisense Interval_166796 chr9 62767717 62768202 + 0 NA intron (ENSMUSG00000032243.8, intron 20 of 27) protein_coding-intron (ENSMUSG00000032243.8, intron 20 of 29) -21945 ENSMUSG00000111537.1 ENSMUSG00000111537 ENSMUST00000214567 Gm7653 processed_pseudogene Interval_158518 chr8 84200522 84201377 + 0 NA promoter-TSS (ENSMUSG00000103593.1) TEC-promoter-TSS (ENSMUSG00000103593.1) 80 ENSMUSG00000103593.1 ENSMUSG00000103593 ENSMUST00000193908 Gm37352 TEC Interval_97821 chr2 144270196 144271484 + 0 NA promoter-TSS (ENSMUSG00000027423.15) protein_coding-promoter-TSS (ENSMUSG00000027423.15) 177 ENSMUSG00000027424.11 ENSMUSG00000027424 ENSMUST00000110027 Mgme1 protein_coding Interval_163757 chr9 25349965 25350292 + 0 NA intron (ENSMUSG00000111558.1, intron 1 of 1) processed_pseudogene-intron (ENSMUSG00000111558.1, intron 1 of 1) 630 ENSMUSG00000111558.1 ENSMUSG00000111558 ENSMUST00000216734 Gm18891 processed_pseudogene Interval_141482 chr6 128539255 128540001 + 0 NA TTS (ENSMUSG00000047228.9) protein_coding-TTS (ENSMUSG00000047228.9) -8228 ENSMUSG00000057370.5 ENSMUSG00000057370 ENSMUST00000081668 Gm8724 processed_pseudogene Interval_131489 chr5 137523578 137524810 + 0 NA exon (ENSMUSG00000029714.11, exon 19 of 24) protein_coding-exon (ENSMUSG00000029714.11, exon 19 of 24) 5400 ENSMUSG00000098597.1 ENSMUSG00000098597 ENSMUST00000185075 Mir6418 miRNA Interval_172804 chrX 49997869 49998579 + 0 NA Intergenic Intergenic 21135 ENSMUSG00000050504.3 ENSMUSG00000050504 ENSMUST00000057071 Olfr1323 protein_coding Interval_94529 chr2 91963086 91964110 + 0 NA promoter-TSS (ENSMUSG00000040479.12) protein_coding-promoter-TSS (ENSMUSG00000040479.12) 2002 ENSMUSG00000040479.12 ENSMUSG00000040479 ENSMUST00000126473 Dgkz protein_coding Interval_158878 chr8 87660521 87661754 + 0 NA TTS (ENSMUSG00000045333.15) protein_coding-TTS (ENSMUSG00000045333.15) 24480 ENSMUSG00000089301.1 ENSMUSG00000089301 ENSMUST00000158676 Gm24841 misc_RNA Interval_137629 chr6 76628410 76629079 + 0 NA Intergenic Intergenic -130960 ENSMUSG00000072476.6 ENSMUSG00000072476 ENSMUST00000097218 Gm9008 protein_coding Interval_154862 chr8 24468278 24468506 + 0 NA Intergenic Intergenic 21295 ENSMUSG00000108820.1 ENSMUSG00000108820 ENSMUST00000209183 Gm44620 TEC Interval_7717 chr1 133251601 133252280 + 0 NA intron (ENSMUSG00000101693.1, intron 1 of 1) protein_coding-intron (ENSMUSG00000041757.17, intron 1 of 26) -4602 ENSMUSG00000041757.17 ENSMUSG00000041757 ENSMUST00000190208 Plekha6 protein_coding Interval_17657 chr10 78574106 78575451 + 0 NA promoter-TSS (ENSMUSG00000032763.11) protein_coding-promoter-TSS (ENSMUSG00000032763.11) -213 ENSMUSG00000032763.11 ENSMUSG00000032763 ENSMUST00000219971 Ilvbl protein_coding Interval_122022 chr5 14081023 14081769 + 0 NA intron (ENSMUSG00000063531.7, intron 1 of 15) protein_coding-intron (ENSMUSG00000063531.7, intron 1 of 16) -7239 ENSMUSG00000085352.1 ENSMUSG00000085352 ENSMUST00000154338 Gm4128 antisense Interval_29731 chr11 86453840 86454788 + 0 NA Intergenic Intergenic -16899 ENSMUSG00000064526.1 ENSMUSG00000064526 ENSMUST00000082592 Gm26439 snRNA Interval_72125 chr17 28176838 28177774 + 0 NA promoter-TSS (ENSMUSG00000024220.14) protein_coding-promoter-TSS (ENSMUSG00000024220.14) -152 ENSMUSG00000024220.14 ENSMUSG00000024220 ENSMUST00000151595 Zfp523 protein_coding Interval_137513 chr6 72831273 72831796 + 0 NA Intergenic Intergenic 64385 ENSMUSG00000107610.1 ENSMUSG00000107610 ENSMUST00000205107 D530018E20Rik TEC Interval_37760 chr12 71794499 71794802 + 0 NA Intergenic Intergenic -26650 ENSMUSG00000113422.1 ENSMUSG00000113422 ENSMUST00000221469 Gm47556 processed_pseudogene Interval_68897 chr16 88062279 88062549 + 0 NA intron (ENSMUSG00000022935.16, intron 1 of 16) protein_coding-intron (ENSMUSG00000022935.16, intron 1 of 15) 227450 ENSMUSG00000022935.16 ENSMUSG00000022935 ENSMUST00000210910 Grik1 protein_coding Interval_25394 chr11 47355387 47355610 + 0 NA intron (ENSMUSG00000020354.15, intron 2 of 2) protein_coding-intron (ENSMUSG00000020354.15, intron 1 of 7) -185934 ENSMUSG00000082792.1 ENSMUSG00000082792 ENSMUST00000121420 Gm12176 processed_pseudogene Interval_1247 chr1 18105273 18106995 + 0 NA Intergenic Intergenic 39762 ENSMUSG00000025774.14 ENSMUSG00000025774 ENSMUST00000115344 Crisp4 protein_coding Interval_68752 chr16 85517091 85517559 + 0 NA intron (ENSMUSG00000041134.15, intron 2 of 3) protein_coding-intron (ENSMUSG00000041134.15, intron 2 of 3) 33092 ENSMUSG00000041134.15 ENSMUSG00000041134 ENSMUST00000162621 Cyyr1 protein_coding Interval_157679 chr8 72263680 72263908 + 0 NA Intergenic Intergenic 20360 ENSMUSG00000110443.1 ENSMUSG00000110443 ENSMUST00000212069 Gm39197 processed_pseudogene Interval_10180 chr1 166547004 166547451 + 0 NA Intergenic Intergenic -49639 ENSMUSG00000086056.1 ENSMUSG00000086056 ENSMUST00000143922 Gm4846 protein_coding Interval_22988 chr11 18511717 18512220 + 0 NA Intergenic Intergenic -2028 ENSMUSG00000082852.2 ENSMUSG00000082852 ENSMUST00000121061 Gm12021 processed_pseudogene Interval_128974 chr5 116407382 116410882 + 0 NA exon (ENSMUSG00000041548.4, exon 3 of 3) protein_coding-exon (ENSMUSG00000041548.4, exon 3 of 3) 6760 ENSMUSG00000041548.4 ENSMUSG00000041548 ENSMUST00000133335 Hspb8 protein_coding Interval_134641 chr6 30109871 30110662 + 0 NA intron (ENSMUSG00000058440.14, intron 4 of 8) protein_coding-intron (ENSMUSG00000058440.14, intron 4 of 9) 20371 ENSMUSG00000058440.14 ENSMUSG00000058440 ENSMUST00000132866 Nrf1 protein_coding Interval_118516 chr4 132211306 132212621 + 0 NA exon (ENSMUSG00000040025.17, exon 1 of 4) protein_coding-exon (ENSMUSG00000040025.17, exon 1 of 4) -1154 ENSMUSG00000040025.17 ENSMUSG00000040025 ENSMUST00000102570 Ythdf2 protein_coding Interval_124127 chr5 38529463 38530278 + 0 NA promoter-TSS (ENSMUSG00000005103.12) protein_coding-promoter-TSS (ENSMUSG00000005103.12) -16588 ENSMUSG00000064419.1 ENSMUSG00000064419 ENSMUST00000082485 Gm22249 snRNA Interval_39150 chr12 85455000 85455881 + 0 NA Intergenic Intergenic -19191 ENSMUSG00000113940.1 ENSMUSG00000113940 ENSMUST00000220805 Gm40477 lincRNA Interval_105665 chr3 88464404 88464658 + 0 NA Intergenic Intergenic -10053 ENSMUSG00000103304.1 ENSMUSG00000103304 ENSMUST00000193850 Gm5979 unprocessed_pseudogene Interval_34876 chr12 12902353 12902956 + 0 NA promoter-TSS (ENSMUSG00000097627.2) lincRNA-promoter-TSS (ENSMUSG00000097627.2) -1896 ENSMUSG00000097627.2 ENSMUSG00000097627 ENSMUST00000221053 4930519A11Rik lincRNA Interval_2953 chr1 51596433 51597620 + 0 NA promoter-TSS (ENSMUSG00000099413.1) lincRNA-promoter-TSS (ENSMUSG00000099413.1) -67657 ENSMUSG00000103424.1 ENSMUSG00000103424 ENSMUST00000194442 Gm37535 TEC Interval_136248 chr6 52265809 52266198 + 0 NA promoter-TSS (ENSMUSG00000098538.1) misc_RNA-promoter-TSS (ENSMUSG00000098538.1) -581 ENSMUSG00000098538.1 ENSMUSG00000098538 ENSMUST00000184459 Gm27866 misc_RNA Interval_7944 chr1 134701095 134701629 + 0 NA intron (ENSMUSG00000026452.15, intron 2 of 9) protein_coding-intron (ENSMUSG00000026452.15, intron 1 of 2) 54681 ENSMUSG00000026452.15 ENSMUSG00000026452 ENSMUST00000187702 Syt2 protein_coding Interval_139551 chr6 100923183 100923494 + 0 NA promoter-TSS (ENSMUSG00000108074.1) TEC-promoter-TSS (ENSMUSG00000108074.1) -182 ENSMUSG00000108074.1 ENSMUSG00000108074 ENSMUST00000205099 4930595O18Rik TEC Interval_86685 chr19 42603149 42604830 + 0 NA promoter-TSS (ENSMUSG00000025185.14) protein_coding-promoter-TSS (ENSMUSG00000025185.14) 4542 ENSMUSG00000025185.14 ENSMUSG00000025185 ENSMUST00000166128 Loxl4 protein_coding Interval_150756 chr7 114133824 114134549 + 0 NA Intergenic Intergenic -16422 ENSMUSG00000055723.6 ENSMUSG00000055723 ENSMUST00000210075 Rras2 protein_coding Interval_95972 chr2 118821768 118823064 + 0 NA intron (ENSMUSG00000027331.15, intron 4 of 8) protein_coding-intron (ENSMUSG00000027331.15, intron 4 of 7) 8184 ENSMUSG00000027331.15 ENSMUSG00000027331 ENSMUST00000148877 Knstrn protein_coding Interval_174260 chrX 142377620 142378257 + 0 NA intron (ENSMUSG00000031278.12, intron 1 of 15) protein_coding-intron (ENSMUSG00000031278.12, intron 1 of 15) 28503 ENSMUSG00000082929.1 ENSMUSG00000082929 ENSMUST00000121648 Gm6067 processed_pseudogene Interval_40889 chr12 109114644 109114920 + 0 NA Intergenic Intergenic 16555 ENSMUSG00000113306.1 ENSMUSG00000113306 ENSMUST00000223357 Mif-ps7 processed_pseudogene Interval_49143 chr13 108439705 108440292 + 0 NA Intergenic Intergenic 58640 ENSMUSG00000098836.1 ENSMUSG00000098836 ENSMUST00000183702 Gm27572 misc_RNA Interval_109882 chr3 149381229 149381482 + 0 NA intron (ENSMUSG00000106515.4, intron 1 of 3) lincRNA-intron (ENSMUSG00000106515.4, intron 1 of 3) -40347 ENSMUSG00000089269.1 ENSMUSG00000089269 ENSMUST00000158644 Gm26468 snRNA Interval_28878 chr11 78984941 78985337 + 0 NA promoter-TSS (ENSMUSG00000001123.15) protein_coding-promoter-TSS (ENSMUSG00000001123.15) -14809 ENSMUSG00000001123.15 ENSMUSG00000001123 ENSMUST00000140073 Lgals9 protein_coding Interval_125316 chr5 66162151 66162611 + 0 NA intron (ENSMUSG00000097092.2, intron 4 of 5) antisense-intron (ENSMUSG00000097092.2, intron 4 of 5) 2281 ENSMUSG00000093258.1 ENSMUSG00000093258 ENSMUST00000175517 Gm22929 snRNA Interval_85405 chr19 25536740 25537683 + 0 NA intron (ENSMUSG00000024837.15, intron 2 of 3) protein_coding-intron (ENSMUSG00000024837.15, intron 2 of 4) 31504 ENSMUSG00000024837.15 ENSMUSG00000024837 ENSMUST00000160814 Dmrt1 protein_coding Interval_98526 chr2 152995700 152996189 + 0 NA intron (ENSMUSG00000074673.15, intron 5 of 9) protein_coding-intron (ENSMUSG00000074673.15, intron 10 of 14) -4313 ENSMUSG00000089898.2 ENSMUSG00000089898 ENSMUST00000130021 Gm14199 antisense Interval_116493 chr4 114665414 114667256 + 0 NA Intergenic Intergenic 7005 ENSMUSG00000100998.1 ENSMUSG00000100998 ENSMUST00000189251 Gm28864 lincRNA Interval_152358 chr7 132345440 132346199 + 0 NA intron (ENSMUSG00000030849.18, intron 2 of 6) protein_coding-intron (ENSMUSG00000030849.18, intron 2 of 6) 20044 ENSMUSG00000109137.1 ENSMUSG00000109137 ENSMUST00000207222 Gm34908 lincRNA Interval_73441 chr17 37296957 37297179 + 0 NA TTS (ENSMUSG00000092077.2) protein_coding-TTS (ENSMUSG00000092077.2) 5564 ENSMUSG00000092077.2 ENSMUSG00000092077 ENSMUST00000058046 Olfr101 protein_coding Interval_87532 chr19 53278254 53278526 + 0 NA Intergenic Intergenic 11759 ENSMUSG00000118350.1 ENSMUSG00000118350 ENSMUST00000237548 Gm36339 processed_pseudogene Interval_39779 chr12 98203629 98203857 + 0 NA TTS (ENSMUSG00000021003.10) protein_coding-TTS (ENSMUSG00000021003.10) 12785 ENSMUSG00000021003.10 ENSMUSG00000021003 ENSMUST00000221322 Galc protein_coding Interval_104284 chr3 62710157 62710419 + 0 NA Intergenic Intergenic -51155 ENSMUSG00000103764.1 ENSMUSG00000103764 ENSMUST00000194394 Gm18382 processed_pseudogene Interval_140088 chr6 113991213 113992154 + 0 NA intron (ENSMUSG00000030302.16, intron 1 of 3) protein_coding-intron (ENSMUSG00000030302.16, intron 1 of 21) -13106 ENSMUSG00000087083.2 ENSMUSG00000087083 ENSMUST00000138670 Gm15083 antisense Interval_7 GL456210.1 79680 80511 + 0 NA NA NA NA NA Interval_28947 chr11 79479881 79480102 + 0 NA intron (ENSMUSG00000020716.16, intron 35 of 56) protein_coding-intron (ENSMUSG00000020716.16, intron 36 of 57) 4040 ENSMUSG00000091523.1 ENSMUSG00000091523 ENSMUST00000165610 AU040972 antisense Interval_77297 chr17 87876024 87878211 + 0 NA Intergenic Intergenic -43860 ENSMUSG00000093922.1 ENSMUSG00000093922 ENSMUST00000179601 Rpl36-ps4 protein_coding Interval_143539 chr7 12326114 12326984 + 0 NA intron (ENSMUSG00000066804.3, intron 3 of 4) protein_coding-intron (ENSMUSG00000066804.3, intron 3 of 4) 2932 ENSMUSG00000066804.3 ENSMUSG00000066804 ENSMUST00000086229 Vmn1r83 protein_coding Interval_33667 chr11 117824769 117826460 + 0 NA promoter-TSS (ENSMUSG00000017718.15) protein_coding-promoter-TSS (ENSMUSG00000017718.15) 223 ENSMUSG00000025574.13 ENSMUSG00000025574 ENSMUST00000150027 Tk1 protein_coding Interval_2625 chr1 42590722 42592240 + 0 NA exon (ENSMUSG00000060424.14, exon 4 of 4) lincRNA-exon (ENSMUSG00000060424.14, exon 4 of 4) -60245 ENSMUSG00000104199.1 ENSMUSG00000104199 ENSMUST00000191831 4930420N18Rik TEC Interval_104422 chr3 65494432 65495181 + 0 NA exon (ENSMUSG00000103513.1, exon 1 of 1) TEC-exon (ENSMUSG00000103513.1, exon 1 of 1) 229 ENSMUSG00000103513.1 ENSMUSG00000103513 ENSMUST00000193896 Gm34780 TEC Interval_143115 chr6 149455402 149457049 + 0 NA intron (ENSMUSG00000003452.15, intron 1 of 9) protein_coding-intron (ENSMUSG00000003452.15, intron 1 of 9) -21752 ENSMUSG00000082072.1 ENSMUSG00000082072 ENSMUST00000119145 Gm15785 processed_pseudogene Interval_46774 chr13 70178147 70178626 + 0 NA intron (ENSMUSG00000113573.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000113573.1, intron 1 of 2) 9554 ENSMUSG00000077594.1 ENSMUSG00000077594 ENSMUST00000104406 Gm26018 snoRNA Interval_82287 chr18 70140962 70141647 + 0 NA exon (ENSMUSG00000024511.15, exon 2 of 2) protein_coding-exon (ENSMUSG00000024511.15, exon 2 of 2) 270 ENSMUSG00000024511.15 ENSMUSG00000024511 ENSMUST00000127217 Rab27b protein_coding Interval_15839 chr10 58322834 58323872 + 0 NA promoter-TSS (ENSMUSG00000019920.18) protein_coding-promoter-TSS (ENSMUSG00000019920.18) 26251 ENSMUSG00000070214.1 ENSMUSG00000070214 ENSMUST00000093703 Gm23058 snRNA Interval_143142 chr7 3638851 3639425 + 0 NA intron (ENSMUSG00000008373.16, intron 11 of 13) protein_coding-intron (ENSMUSG00000008373.16, intron 11 of 13) 5466 ENSMUSG00000085039.2 ENSMUSG00000085039 ENSMUST00000129971 Gm15927 processed_transcript Interval_58853 chr15 39207538 39208302 + 0 NA intron (ENSMUSG00000037386.16, intron 1 of 25) protein_coding-intron (ENSMUSG00000037386.16, intron 1 of 26) 27409 ENSMUSG00000098021.2 ENSMUSG00000098021 ENSMUST00000182394 Gm9522 processed_pseudogene Interval_35196 chr12 17992267 17993822 + 0 NA promoter-TSS (ENSMUSG00000113234.1) unprocessed_pseudogene-promoter-TSS (ENSMUSG00000113234.1) -89 ENSMUSG00000113234.1 ENSMUSG00000113234 ENSMUST00000223267 Gm49330 unprocessed_pseudogene Interval_57201 chr15 7530656 7531944 + 0 NA Intergenic Intergenic 44942 ENSMUSG00000115033.1 ENSMUSG00000115033 ENSMUST00000227603 Gm49206 processed_pseudogene Interval_13164 chr10 12703606 12704718 + 0 NA intron (ENSMUSG00000019820.11, intron 23 of 74) protein_coding-intron (ENSMUSG00000019820.11, intron 22 of 73) -15300 ENSMUSG00000019820.11 ENSMUSG00000019820 ENSMUST00000219135 Utrn protein_coding Interval_84747 chr19 16181445 16182479 + 0 NA intron (ENSMUSG00000024639.5, intron 1 of 2) protein_coding-intron (ENSMUSG00000024639.5, intron 1 of 6) -17157 ENSMUSG00000057990.4 ENSMUSG00000057990 ENSMUST00000075293 E030024N20Rik processed_pseudogene Interval_135881 chr6 48215286 48215544 + 0 NA Intergenic Intergenic -56135 ENSMUSG00000097434.2 ENSMUSG00000097434 ENSMUST00000180741 Gm16630 lincRNA Interval_23215 chr11 20600043 20600246 + 0 NA intron (ENSMUSG00000049800.13, intron 1 of 1) protein_coding-intron (ENSMUSG00000049800.13, intron 1 of 1) -24955 ENSMUSG00000083555.1 ENSMUSG00000083555 ENSMUST00000121890 Gm12035 processed_pseudogene Interval_112442 chr4 41302959 41303922 + 0 NA TTS (ENSMUSG00000065873.1) rRNA-TTS (ENSMUSG00000065873.1) 282 ENSMUSG00000065873.1 ENSMUSG00000065873 ENSMUST00000083939 n-R5s183 rRNA Interval_101011 chr2 174251872 174252363 + 0 NA Intergenic Intergenic 4189 ENSMUSG00000098467.1 ENSMUSG00000098467 ENSMUST00000184218 Gm27591 miRNA Interval_100080 chr2 166963477 166963708 + 0 NA promoter-TSS (ENSMUSG00000039536.16) protein_coding-promoter-TSS (ENSMUSG00000039536.16) 1124 ENSMUSG00000039536.16 ENSMUSG00000039536 ENSMUST00000130104 Stau1 protein_coding Interval_8075 chr1 135580744 135581401 + 0 NA intron (ENSMUSG00000009418.16, intron 4 of 30) protein_coding-intron (ENSMUSG00000009418.16, intron 1 of 29) -3701 ENSMUSG00000054412.5 ENSMUSG00000054412 ENSMUST00000067468 Gm4793 antisense Interval_56842 chr14 122375252 122375491 + 0 NA intron (ENSMUSG00000025545.10, intron 3 of 7) protein_coding-intron (ENSMUSG00000025545.10, intron 3 of 7) 12789 ENSMUSG00000095311.1 ENSMUSG00000095311 ENSMUST00000175481 Gm25464 snRNA Interval_33993 chr11 119894503 119895224 + 0 NA exon (ENSMUSG00000025583.15, exon 12 of 13) protein_coding-exon (ENSMUSG00000025583.15, exon 12 of 13) -19152 ENSMUSG00000025371.12 ENSMUSG00000025371 ENSMUST00000137055 Chmp6 protein_coding Interval_113960 chr4 61834941 61835139 + 0 NA exon (ENSMUSG00000058523.2, exon 1 of 7) protein_coding-exon (ENSMUSG00000058523.2, exon 1 of 7) 193 ENSMUSG00000058523.2 ENSMUSG00000058523 ENSMUST00000082287 Mup5 protein_coding Interval_125072 chr5 64256564 64256927 + 0 NA exon (ENSMUSG00000029174.18, exon 3 of 22) protein_coding-exon (ENSMUSG00000029174.18, exon 3 of 22) -3520 ENSMUSG00000081143.2 ENSMUSG00000081143 ENSMUST00000064305 Gm15823 processed_pseudogene Interval_1188 chr1 16722635 16722949 + 0 NA Intergenic Intergenic 34741 ENSMUSG00000025779.10 ENSMUSG00000025779 ENSMUST00000190366 Ly96 protein_coding Interval_51719 chr14 31618832 31619035 + 0 NA intron (ENSMUSG00000021884.18, intron 10 of 14) protein_coding-intron (ENSMUSG00000021884.18, intron 12 of 16) 21945 ENSMUSG00000115022.1 ENSMUSG00000115022 ENSMUST00000167175 Gm49387 protein_coding Interval_161127 chr8 117646153 117647150 + 0 NA Intergenic Intergenic 27038 ENSMUSG00000034308.13 ENSMUSG00000034308 ENSMUST00000174450 Sdr42e1 protein_coding Interval_128814 chr5 115423016 115423711 + 0 NA promoter-TSS (ENSMUSG00000106887.1) TEC-promoter-TSS (ENSMUSG00000106887.1) -863 ENSMUSG00000106887.1 ENSMUSG00000106887 ENSMUST00000201293 A930005G22Rik TEC Interval_44034 chr13 40236935 40238330 + 0 NA intron (ENSMUSG00000047094.9, intron 5 of 18) protein_coding-intron (ENSMUSG00000047094.9, intron 5 of 18) 50379 ENSMUSG00000047094.9 ENSMUSG00000047094 ENSMUST00000224813 Ofcc1 protein_coding Interval_59481 chr15 53901590 53902972 + 0 NA promoter-TSS (ENSMUSG00000058656.13) protein_coding-promoter-TSS (ENSMUSG00000058656.13) 256 ENSMUSG00000058656.13 ENSMUSG00000058656 ENSMUST00000132362 Samd12 protein_coding Interval_66166 chr16 32078558 32079731 + 0 NA exon (ENSMUSG00000022781.8, exon 1 of 15) protein_coding-exon (ENSMUSG00000022781.8, exon 1 of 15) 13234 ENSMUSG00000077460.1 ENSMUSG00000077460 ENSMUST00000104272 Gm26419 snoRNA Interval_126122 chr5 77668820 77669520 + 0 NA TTS (ENSMUSG00000089415.1) snoRNA-TTS (ENSMUSG00000089415.1) 676 ENSMUSG00000089415.1 ENSMUSG00000089415 ENSMUST00000158790 Gm22011 snoRNA Interval_63848 chr16 3965396 3966378 + 0 NA promoter-TSS (ENSMUSG00000049871.14) protein_coding-promoter-TSS (ENSMUSG00000049871.14) -247 ENSMUSG00000049871.14 ENSMUSG00000049871 ENSMUST00000163478 Nlrc3 protein_coding Interval_9326 chr1 156263234 156263767 + 0 NA promoter-TSS (ENSMUSG00000060985.15) protein_coding-promoter-TSS (ENSMUSG00000060985.15) 28 ENSMUSG00000060985.15 ENSMUSG00000060985 ENSMUST00000141760 Tdrd5 protein_coding Interval_109943 chr3 152089150 152089795 + 0 NA Intergenic Intergenic -16967 ENSMUSG00000105698.1 ENSMUSG00000105698 ENSMUST00000198961 Gm31881 antisense Interval_11055 chr1 178979654 178980411 + 0 NA intron (ENSMUSG00000055067.15, intron 6 of 7) protein_coding-intron (ENSMUSG00000055067.15, intron 7 of 8) -62418 ENSMUSG00000089713.1 ENSMUSG00000089713 ENSMUST00000162545 Gm16564 antisense Interval_77376 chr17 88316163 88316873 + 0 NA intron (ENSMUSG00000117351.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000117351.1, intron 1 of 1) -11140 ENSMUSG00000117497.1 ENSMUSG00000117497 ENSMUST00000234925 1700116H05Rik lincRNA Interval_35890 chr12 31634031 31635378 + 0 NA promoter-TSS (ENSMUSG00000020650.15) protein_coding-promoter-TSS (ENSMUSG00000020650.15) 20072 ENSMUSG00000020648.3 ENSMUSG00000020648 ENSMUST00000219855 Dus4l protein_coding Interval_14410 chr10 33087709 33089546 + 0 NA intron (ENSMUSG00000019787.9, intron 1 of 1) protein_coding-intron (ENSMUSG00000019787.9, intron 1 of 37) 8073 ENSMUSG00000019787.9 ENSMUSG00000019787 ENSMUST00000219000 Trdn protein_coding Interval_118736 chr4 133456067 133456280 + 0 NA Intergenic Intergenic -23959 ENSMUSG00000046694.6 ENSMUSG00000046694 ENSMUST00000051676 Tent5b protein_coding Interval_165075 chr9 44417551 44420557 + 0 NA promoter-TSS (ENSMUSG00000043923.8) protein_coding-promoter-TSS (ENSMUSG00000043923.8) -1017 ENSMUSG00000043923.8 ENSMUSG00000043923 ENSMUST00000216572 Ccdc84 protein_coding Interval_19891 chr10 110962391 110962801 + 0 NA intron (ENSMUSG00000035798.14, intron 1 of 4) protein_coding-intron (ENSMUSG00000035798.14, intron 7 of 16) 42406 ENSMUSG00000020186.7 ENSMUSG00000020186 ENSMUST00000220301 Csrp2 protein_coding Interval_80257 chr18 38579872 38581000 + 0 NA Intergenic Intergenic -2414 ENSMUSG00000118296.1 ENSMUSG00000118296 ENSMUST00000236625 Gm19100 processed_pseudogene Interval_121373 chr4 155320498 155321135 + 0 NA intron (ENSMUSG00000029053.16, intron 4 of 17) protein_coding-intron (ENSMUSG00000029053.16, intron 4 of 17) -22867 ENSMUSG00000098729.1 ENSMUSG00000098729 ENSMUST00000184626 Gm27200 antisense Interval_120728 chr4 150301608 150302248 + 0 NA intron (ENSMUSG00000039852.17, intron 1 of 22) protein_coding-intron (ENSMUSG00000039852.17, intron 1 of 22) 13508 ENSMUSG00000085787.3 ENSMUSG00000085787 ENSMUST00000136346 Gm13092 processed_pseudogene Interval_33991 chr11 119886454 119887220 + 0 NA intron (ENSMUSG00000025583.15, intron 24 of 32) protein_coding-intron (ENSMUSG00000025583.15, intron 25 of 33) -27178 ENSMUSG00000025371.12 ENSMUSG00000025371 ENSMUST00000137055 Chmp6 protein_coding Interval_161306 chr8 119644487 119645606 + 0 NA Intergenic Intergenic -9700 ENSMUSG00000045246.11 ENSMUSG00000045246 ENSMUST00000061828 Kcng4 protein_coding Interval_22367 chr11 9191457 9191693 + 0 NA promoter-TSS (ENSMUSG00000004668.14) protein_coding-promoter-TSS (ENSMUSG00000004668.14) -1876 ENSMUSG00000004668.14 ENSMUSG00000004668 ENSMUST00000151522 Abca13 protein_coding Interval_143705 chr7 15838590 15840892 + 0 NA promoter-TSS (ENSMUSG00000041583.8) protein_coding-promoter-TSS (ENSMUSG00000041583.8) -63 ENSMUSG00000041583.8 ENSMUSG00000041583 ENSMUST00000108513 Obox6 protein_coding Interval_129914 chr5 123040827 123041155 + 0 NA intron (ENSMUSG00000029477.14, intron 2 of 4) protein_coding-intron (ENSMUSG00000029477.14, intron 2 of 4) 4991 ENSMUSG00000105107.1 ENSMUSG00000105107 ENSMUST00000197455 Gm43412 TEC Interval_76460 chr17 80345063 80345981 + 0 NA intron (ENSMUSG00000054901.7, intron 4 of 6) protein_coding-intron (ENSMUSG00000054901.7, intron 3 of 17) 28019 ENSMUSG00000066938.1 ENSMUSG00000066938 ENSMUST00000086549 Gm10190 protein_coding Interval_78372 chr18 12238959 12239411 + 0 NA Intergenic Intergenic 43160 ENSMUSG00000057766.14 ENSMUSG00000057766 ENSMUST00000142066 Ankrd29 protein_coding Interval_69270 chr16 91824408 91825042 + 0 NA intron (ENSMUSG00000022957.20, intron 4 of 4) protein_coding-intron (ENSMUSG00000022957.20, intron 14 of 28) -79338 ENSMUSG00000022957.20 ENSMUSG00000022957 ENSMUST00000137575 Itsn1 protein_coding Interval_22753 chr11 14748122 14748950 + 0 NA Intergenic Intergenic 25919 ENSMUSG00000083427.1 ENSMUSG00000083427 ENSMUST00000120978 Gm12007 processed_pseudogene Interval_94676 chr2 93226698 93227235 + 0 NA intron (ENSMUSG00000027217.13, intron 2 of 9) protein_coding-intron (ENSMUSG00000027217.13, intron 1 of 8) 39418 ENSMUSG00000068735.14 ENSMUSG00000068735 ENSMUST00000143164 Trp53i11 protein_coding Interval_96983 chr2 130257332 130257537 + 0 NA intron (ENSMUSG00000060332.9, intron 16 of 18) protein_coding-intron (ENSMUSG00000060332.9, intron 17 of 19) -18072 ENSMUSG00000080610.1 ENSMUSG00000080610 ENSMUST00000116960 Snord110 snoRNA Interval_40126 chr12 101798154 101798435 + 0 NA intron (ENSMUSG00000021186.9, intron 4 of 10) protein_coding-intron (ENSMUSG00000021186.9, intron 4 of 10) 20174 ENSMUSG00000021186.9 ENSMUSG00000021186 ENSMUST00000221373 Fbln5 protein_coding Interval_174520 chrX 155370627 155370888 + 0 NA Intergenic Intergenic -30003 ENSMUSG00000025289.15 ENSMUSG00000025289 ENSMUST00000123915 Prdx4 protein_coding Interval_78922 chr18 21675466 21675670 + 0 NA Intergenic Intergenic -20850 ENSMUSG00000042514.11 ENSMUSG00000042514 ENSMUST00000122333 Klhl14 protein_coding Interval_114492 chr4 81173009 81173717 + 0 NA Intergenic Intergenic 165041 ENSMUSG00000077607.1 ENSMUSG00000077607 ENSMUST00000104419 Gm25803 snoRNA Interval_50435 chr14 13151672 13152237 + 0 NA Intergenic Intergenic 18764 ENSMUSG00000051729.12 ENSMUSG00000051729 ENSMUST00000140967 Gm5087 processed_transcript Interval_39471 chr12 88072404 88072768 + 0 NA TTS (ENSMUSG00000113783.1) processed_pseudogene-TTS (ENSMUSG00000113783.1) 609 ENSMUSG00000113783.1 ENSMUSG00000113783 ENSMUST00000222311 Gm18617 processed_pseudogene Interval_25626 chr11 50277111 50277350 + 0 NA intron (ENSMUSG00000050567.16, intron 1 of 3) protein_coding-intron (ENSMUSG00000050567.16, intron 1 of 4) 14574 ENSMUSG00000050567.16 ENSMUSG00000050567 ENSMUST00000059458 Maml1 protein_coding Interval_79881 chr18 35720649 35722784 + 0 NA promoter-TSS (ENSMUSG00000073599.10) protein_coding-promoter-TSS (ENSMUSG00000073599.10) 591 ENSMUSG00000073599.10 ENSMUSG00000073599 ENSMUST00000143684 Ecscr protein_coding Interval_64062 chr16 6895573 6896695 + 0 NA intron (ENSMUSG00000008658.16, intron 4 of 11) protein_coding-intron (ENSMUSG00000008658.16, intron 3 of 14) -297613 ENSMUSG00000008658.16 ENSMUSG00000008658 ENSMUST00000231031 Rbfox1 protein_coding Interval_125055 chr5 64141568 64141765 + 0 NA Intergenic Intergenic -2582 ENSMUSG00000087954.1 ENSMUSG00000087954 ENSMUST00000157329 Gm22559 snoRNA Interval_129350 chr5 119385091 119386131 + 0 NA Intergenic Intergenic 88366 ENSMUSG00000084548.1 ENSMUSG00000084548 ENSMUST00000122599 n-R5s175 rRNA Interval_174637 chrX 161162481 161163332 + 0 NA promoter-TSS (ENSMUSG00000000037.17) protein_coding-promoter-TSS (ENSMUSG00000000037.17) 80381 ENSMUSG00000000037.17 ENSMUSG00000000037 ENSMUST00000238361 Scml2 protein_coding Interval_102914 chr3 32748382 32750179 + 0 NA TTS (ENSMUSG00000027673.12) protein_coding-TTS (ENSMUSG00000027673.12) -11675 ENSMUSG00000037531.8 ENSMUSG00000037531 ENSMUST00000192021 Mrpl47 protein_coding Interval_107116 chr3 103681916 103684119 + 0 NA Intergenic Intergenic -11781 ENSMUSG00000081910.1 ENSMUSG00000081910 ENSMUST00000122153 Gm15986 processed_pseudogene Interval_28940 chr11 79403875 79404478 + 0 NA intron (ENSMUSG00000020716.16, intron 5 of 30) protein_coding-intron (ENSMUSG00000020716.16, intron 5 of 57) -31946 ENSMUSG00000082304.1 ENSMUSG00000082304 ENSMUST00000119771 Gm11198 processed_pseudogene Interval_168750 chr9 86686242 86686865 + 0 NA intron (ENSMUSG00000032418.15, intron 1 of 13) protein_coding-intron (ENSMUSG00000032418.15, intron 1 of 13) -1345 ENSMUSG00000102259.1 ENSMUSG00000102259 ENSMUST00000193572 Gm38230 TEC Interval_45014 chr13 51434338 51435198 + 0 NA intron (ENSMUSG00000021448.8, intron 10 of 10) protein_coding-intron (ENSMUSG00000021448.8, intron 11 of 11) -16082 ENSMUSG00000112959.1 ENSMUSG00000112959 ENSMUST00000220470 Gm32834 lincRNA Interval_81907 chr18 65759991 65760244 + 0 NA Intergenic Intergenic -40438 ENSMUSG00000024516.13 ENSMUSG00000024516 ENSMUST00000235765 Sec11c protein_coding Interval_68970 chr16 89830378 89831848 + 0 NA intron (ENSMUSG00000002489.16, intron 15 of 27) protein_coding-intron (ENSMUSG00000002489.16, intron 15 of 27) -35831 ENSMUSG00000002489.16 ENSMUSG00000002489 ENSMUST00000136760 Tiam1 protein_coding Interval_164626 chr9 40187188 40187405 + 0 NA exon (ENSMUSG00000051095.7, exon 1 of 1) protein_coding-exon (ENSMUSG00000051095.7, exon 1 of 1) -5033 ENSMUSG00000025602.13 ENSMUSG00000025602 ENSMUST00000168832 Zfp202 protein_coding Interval_117052 chr4 119238058 119239860 + 0 NA intron (ENSMUSG00000028641.16, intron 2 of 4) protein_coding-intron (ENSMUSG00000028641.16, intron 5 of 14) 6013 ENSMUSG00000028641.16 ENSMUSG00000028641 ENSMUST00000127087 P3h1 protein_coding Interval_162699 chr9 7899807 7902626 + 0 NA Intergenic Intergenic -40890 ENSMUSG00000032000.17 ENSMUSG00000032000 ENSMUST00000159672 Birc3 protein_coding Interval_91167 chr2 35621679 35622661 + 0 NA promoter-TSS (ENSMUSG00000026883.17) protein_coding-promoter-TSS (ENSMUSG00000026883.17) -63685 ENSMUSG00000086555.2 ENSMUSG00000086555 ENSMUST00000134679 Gm13446 processed_transcript Interval_174613 chrX 160126942 160128011 + 0 NA intron (ENSMUSG00000031299.10, intron 2 of 2) protein_coding-intron (ENSMUSG00000031299.10, intron 7 of 10) 1489 ENSMUSG00000031299.10 ENSMUSG00000031299 ENSMUST00000127535 Pdha1 protein_coding Interval_113187 chr4 49285972 49286193 + 0 NA intron (ENSMUSG00000063446.4, intron 3 of 3) protein_coding-intron (ENSMUSG00000063446.4, intron 3 of 7) -3216 ENSMUSG00000064782.1 ENSMUSG00000064782 ENSMUST00000082848 Gm22685 snRNA Interval_8721 chr1 149947992 149948605 + 0 NA intron (ENSMUSG00000056220.14, intron 1 of 5) protein_coding-intron (ENSMUSG00000056220.14, intron 1 of 17) 12960 ENSMUSG00000056220.14 ENSMUSG00000056220 ENSMUST00000134676 Pla2g4a protein_coding Interval_28494 chr11 76343327 76343695 + 0 NA intron (ENSMUSG00000020844.6, intron 1 of 7) protein_coding-intron (ENSMUSG00000020844.6, intron 1 of 7) 55557 ENSMUSG00000020844.6 ENSMUSG00000020844 ENSMUST00000131472 Nxn protein_coding Interval_143840 chr7 16648998 16649412 + 0 NA TTS (ENSMUSG00000108307.1) transcribed_unprocessed_pseudogene-TTS (ENSMUSG00000108307.1) -1416 ENSMUSG00000108610.1 ENSMUSG00000108610 ENSMUST00000206614 Gm29725 processed_pseudogene Interval_15373 chr10 45160090 45160817 + 0 NA exon (ENSMUSG00000019849.11, exon 15 of 15) protein_coding-exon (ENSMUSG00000019849.11, exon 15 of 15) -17645 ENSMUSG00000019848.14 ENSMUSG00000019848 ENSMUST00000161803 Popdc3 protein_coding Interval_14275 chr10 30250485 30251016 + 0 NA Intergenic Intergenic -50258 ENSMUSG00000075266.5 ENSMUSG00000075266 ENSMUST00000099985 Cenpw protein_coding Interval_42709 chr13 18337488 18337734 + 0 NA intron (ENSMUSG00000009734.18, intron 2 of 5) protein_coding-intron (ENSMUSG00000009734.18, intron 2 of 7) 60075 ENSMUSG00000009734.18 ENSMUSG00000009734 ENSMUST00000222900 Pou6f2 protein_coding Interval_116942 chr4 118343730 118343985 + 0 NA Intergenic Intergenic -16133 ENSMUSG00000006395.16 ENSMUSG00000006395 ENSMUST00000132882 Hyi polymorphic_pseudogene Interval_145622 chr7 36172420 36172687 + 0 NA Intergenic Intergenic 54279 ENSMUSG00000066543.8 ENSMUSG00000066543 ENSMUST00000119541 Rpl17-ps9 processed_pseudogene Interval_123668 chr5 34391347 34391630 + 0 NA intron (ENSMUSG00000037210.16, intron 1 of 20) protein_coding-intron (ENSMUSG00000037210.16, intron 1 of 20) -39731 ENSMUSG00000037210.16 ENSMUSG00000037210 ENSMUST00000181379 Fam193a protein_coding Interval_65853 chr16 29797278 29797779 + 0 NA Intergenic Intergenic -13530 ENSMUSG00000097307.1 ENSMUSG00000097307 ENSMUST00000181815 Gm26834 lincRNA Interval_137056 chr6 67015784 67016492 + 0 NA intron (ENSMUSG00000036402.13, intron 3 of 4) protein_coding-intron (ENSMUSG00000036402.13, intron 4 of 4) 3653 ENSMUSG00000084154.1 ENSMUSG00000084154 ENSMUST00000121764 Gm15644 processed_pseudogene Interval_4973 chr1 83094226 83094445 + 0 NA Intergenic Intergenic -22458 ENSMUSG00000026166.14 ENSMUSG00000026166 ENSMUST00000186832 Ccl20 protein_coding Interval_125115 chr5 64622760 64624396 + 0 NA Intergenic Intergenic -12262 ENSMUSG00000104928.1 ENSMUSG00000104928 ENSMUST00000197839 Gm42565 lincRNA Interval_76429 chr17 80137941 80139447 + 0 NA intron (ENSMUSG00000035473.10, intron 2 of 6) protein_coding-intron (ENSMUSG00000035473.10, intron 2 of 6) -6458 ENSMUSG00000035473.10 ENSMUSG00000035473 ENSMUST00000133955 Galm protein_coding Interval_162975 chr9 13946494 13946974 + 0 NA intron (ENSMUSG00000111871.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000111871.1, intron 1 of 1) 1453 ENSMUSG00000111871.1 ENSMUSG00000111871 ENSMUST00000214014 Gm47557 lincRNA Interval_102838 chr3 31979137 31980182 + 0 NA intron (ENSMUSG00000037610.15, intron 2 of 6) protein_coding-intron (ENSMUSG00000037610.15, intron 1 of 4) 24895 ENSMUSG00000103539.1 ENSMUSG00000103539 ENSMUST00000194517 Gm37834 TEC Interval_87983 chr19 57561760 57561968 + 0 NA Intergenic Intergenic -17641 ENSMUSG00000117770.1 ENSMUSG00000117770 ENSMUST00000235373 Gm50285 lincRNA Interval_151748 chr7 126396320 126397449 + 0 NA promoter-TSS (ENSMUSG00000030722.7) protein_coding-promoter-TSS (ENSMUSG00000030722.7) 1026 ENSMUSG00000108420.1 ENSMUSG00000108420 ENSMUST00000206502 Gm45141 TEC Interval_74460 chr17 50972395 50972735 + 0 NA intron (ENSMUSG00000023923.10, intron 4 of 16) protein_coding-intron (ENSMUSG00000023923.10, intron 4 of 21) -55524 ENSMUSG00000084583.1 ENSMUSG00000084583 ENSMUST00000122634 Gm25177 snRNA Interval_55762 chr14 99748243 99748608 + 0 NA intron (ENSMUSG00000103188.1, intron 1 of 1) TEC-intron (ENSMUSG00000103188.1, intron 1 of 1) 25383 ENSMUSG00000065238.1 ENSMUSG00000065238 ENSMUST00000083304 Gm22970 snRNA Interval_11283 chr1 180696370 180697655 + 0 NA promoter-TSS (ENSMUSG00000026497.7) protein_coding-promoter-TSS (ENSMUSG00000026497.7) 22 ENSMUSG00000026497.7 ENSMUSG00000026497 ENSMUST00000027778 Mixl1 protein_coding Interval_8679 chr1 147315550 147316461 + 0 NA Intergenic Intergenic -34063 ENSMUSG00000102134.1 ENSMUSG00000102134 ENSMUST00000193584 Gm9931 TEC Interval_164484 chr9 37420583 37421487 + 0 NA exon (ENSMUSG00000032128.15, exon 16 of 27) protein_coding-exon (ENSMUSG00000032128.15, exon 16 of 27) 1568 ENSMUSG00000032128.15 ENSMUSG00000032128 ENSMUST00000167216 Robo3 protein_coding Interval_136343 chr6 53517510 53518039 + 0 NA intron (ENSMUSG00000053007.9, intron 4 of 5) protein_coding-intron (ENSMUSG00000053007.9, intron 5 of 10) 83800 ENSMUSG00000096147.1 ENSMUSG00000096147 ENSMUST00000083282 Gm25818 snRNA Interval_11384 chr1 181439908 181440175 + 0 NA intron (ENSMUSG00000026514.14, intron 3 of 5) protein_coding-intron (ENSMUSG00000026514.14, intron 3 of 5) -7641 ENSMUSG00000089927.1 ENSMUSG00000089927 ENSMUST00000160086 Gm16539 unprocessed_pseudogene Interval_78983 chr18 23594168 23594494 + 0 NA intron (ENSMUSG00000024302.16, intron 8 of 17) protein_coding-intron (ENSMUSG00000024302.16, intron 8 of 11) 57506 ENSMUSG00000114088.1 ENSMUSG00000114088 ENSMUST00000220789 Gm47898 antisense Interval_158774 chr8 86285969 86286551 + 0 NA Intergenic Intergenic -6241 ENSMUSG00000065737.1 ENSMUSG00000065737 ENSMUST00000083803 Gm24490 snRNA Interval_154147 chr8 13053996 13054208 + 0 NA intron (ENSMUSG00000031444.16, intron 8 of 8) protein_coding-intron (ENSMUSG00000031444.16, intron 8 of 8) -6841 ENSMUSG00000031445.5 ENSMUSG00000031445 ENSMUST00000033822 Proz protein_coding Interval_32793 chr11 110685004 110685728 + 0 NA Intergenic Intergenic 140859 ENSMUSG00000085985.1 ENSMUSG00000085985 ENSMUST00000144689 Gm11682 lincRNA Interval_18620 chr10 88576809 88577951 + 0 NA intron (ENSMUSG00000020061.18, intron 2 of 26) protein_coding-intron (ENSMUSG00000020061.18, intron 2 of 28) -25092 ENSMUSG00000112841.1 ENSMUSG00000112841 ENSMUST00000217743 Gm48752 TEC Interval_113152 chr4 48646041 48646400 + 0 NA intron (ENSMUSG00000028347.14, intron 2 of 4) protein_coding-intron (ENSMUSG00000028347.14, intron 7 of 9) 9286 ENSMUSG00000028347.14 ENSMUSG00000028347 ENSMUST00000141720 Tmeff1 protein_coding Interval_52740 chr14 49237899 49238772 + 0 NA intron (ENSMUSG00000021850.14, intron 2 of 5) protein_coding-intron (ENSMUSG00000021850.14, intron 2 of 6) 7093 ENSMUSG00000021850.14 ENSMUSG00000021850 ENSMUST00000130853 ccdc198 protein_coding Interval_58537 chr15 35917051 35917661 + 0 NA intron (ENSMUSG00000037646.10, intron 58 of 61) protein_coding-intron (ENSMUSG00000037646.10, intron 58 of 61) 19813 ENSMUSG00000014313.15 ENSMUSG00000014313 ENSMUST00000227231 Cox6c protein_coding Interval_154692 chr8 22627407 22627702 + 0 NA TTS (ENSMUSG00000031535.7) protein_coding-TTS (ENSMUSG00000031535.7) 3511 ENSMUSG00000031535.7 ENSMUSG00000031535 ENSMUST00000033936 Dkk4 protein_coding Interval_1299 chr1 19344605 19344895 + 0 NA Intergenic Intergenic 13811 ENSMUSG00000100204.1 ENSMUSG00000100204 ENSMUST00000188428 Gm4849 processed_pseudogene Interval_36962 chr12 55666786 55668530 + 0 NA intron (ENSMUSG00000021027.17, intron 34 of 39) protein_coding-intron (ENSMUSG00000021027.17, intron 34 of 40) 68231 ENSMUSG00000045440.4 ENSMUSG00000045440 ENSMUST00000051857 Insm2 protein_coding Interval_149512 chr7 99261660 99262373 + 0 NA intron (ENSMUSG00000097015.2, intron 3 of 3) lincRNA-intron (ENSMUSG00000097015.2, intron 3 of 3) 5202 ENSMUSG00000097015.2 ENSMUSG00000097015 ENSMUST00000180761 Gm26705 lincRNA Interval_19274 chr10 95952190 95952424 + 0 NA intron (ENSMUSG00000036499.9, intron 1 of 1) protein_coding-intron (ENSMUSG00000036499.9, intron 1 of 28) 11657 ENSMUSG00000036499.9 ENSMUSG00000036499 ENSMUST00000218517 Eea1 protein_coding Interval_72939 chr17 33668649 33668951 + 0 NA TTS (ENSMUSG00000059208.15) protein_coding-TTS (ENSMUSG00000059208.15) 16601 ENSMUSG00000059208.15 ENSMUSG00000059208 ENSMUST00000127598 Hnrnpm protein_coding Interval_103783 chr3 52845377 52845779 + 0 NA Intergenic Intergenic -47793 ENSMUSG00000104109.1 ENSMUSG00000104109 ENSMUST00000194198 Gm30292 lincRNA Interval_91839 chr2 50151277 50151825 + 0 NA intron (ENSMUSG00000050447.15, intron 1 of 4) protein_coding-intron (ENSMUSG00000050447.15, intron 2 of 5) 23182 ENSMUSG00000050447.15 ENSMUSG00000050447 ENSMUST00000126337 Lypd6 protein_coding Interval_155380 chr8 33033929 33034296 + 0 NA intron (ENSMUSG00000110214.1, intron 3 of 3) lincRNA-intron (ENSMUSG00000110214.1, intron 3 of 3) 21979 ENSMUSG00000110214.1 ENSMUSG00000110214 ENSMUST00000211548 Gm45587 lincRNA Interval_37534 chr12 69651607 69651874 + 0 NA intron (ENSMUSG00000034801.13, intron 2 of 22) protein_coding-intron (ENSMUSG00000034801.13, intron 2 of 22) -34621 ENSMUSG00000034801.13 ENSMUSG00000034801 ENSMUST00000183306 Sos2 protein_coding Interval_141524 chr6 128868713 128869662 + 0 NA intron (ENSMUSG00000090164.8, intron 2 of 2) protein_coding-intron (ENSMUSG00000090164.8, intron 2 of 2) -3993 ENSMUSG00000107633.1 ENSMUSG00000107633 ENSMUST00000204652 Gm44078 TEC Interval_164329 chr9 35372152 35372988 + 0 NA Intergenic Intergenic -9457 ENSMUSG00000103259.1 ENSMUSG00000103259 ENSMUST00000193707 2610105M22Rik TEC Interval_48808 chr13 103572586 103573323 + 0 NA Intergenic Intergenic -68972 ENSMUSG00000096642.1 ENSMUSG00000096642 ENSMUST00000179897 Gm24870 snRNA Interval_2034 chr1 36016963 36017931 + 0 NA Intergenic Intergenic 6375 ENSMUSG00000104201.1 ENSMUSG00000104201 ENSMUST00000192017 4930535G08Rik lincRNA Interval_151151 chr7 118835906 118837176 + 0 NA intron (ENSMUSG00000030982.19, intron 3 of 5) protein_coding-intron (ENSMUSG00000030982.19, intron 21 of 23) 3976 ENSMUSG00000077667.1 ENSMUSG00000077667 ENSMUST00000104479 Gm26147 snoRNA Interval_94192 chr2 84999931 85000291 + 0 NA intron (ENSMUSG00000027071.14, intron 9 of 10) protein_coding-intron (ENSMUSG00000027071.14, intron 10 of 11) 11896 ENSMUSG00000027072.13 ENSMUSG00000027072 ENSMUST00000028466 Prg3 protein_coding Interval_41328 chr12 112870496 112871100 + 0 NA Intergenic Intergenic -2570 ENSMUSG00000021298.8 ENSMUSG00000021298 ENSMUST00000222776 Gpr132 protein_coding Interval_26947 chr11 61761661 61762543 + 0 NA promoter-TSS (ENSMUSG00000020528.14) protein_coding-promoter-TSS (ENSMUSG00000020528.14) -14 ENSMUSG00000020528.14 ENSMUSG00000020528 ENSMUST00000123575 Prpsap2 protein_coding Interval_122761 chr5 25188077 25189113 + 0 NA promoter-TSS (ENSMUSG00000088842.1) misc_RNA-promoter-TSS (ENSMUSG00000088842.1) 48 ENSMUSG00000088842.1 ENSMUSG00000088842 ENSMUST00000158217 Gm26356 misc_RNA Interval_108975 chr3 133797514 133797735 + 0 NA Intergenic Intergenic -6120 ENSMUSG00000106069.1 ENSMUSG00000106069 ENSMUST00000198726 Gm6135 lincRNA Interval_80725 chr18 46601539 46601985 + 0 NA intron (ENSMUSG00000057561.10, intron 3 of 3) protein_coding-intron (ENSMUSG00000057561.10, intron 2 of 2) 4061 ENSMUSG00000057561.10 ENSMUSG00000057561 ENSMUST00000236497 Eif1a protein_coding Interval_170493 chr9 108305640 108306900 + 0 NA promoter-TSS (ENSMUSG00000039461.12) protein_coding-promoter-TSS (ENSMUSG00000039461.12) -322 ENSMUSG00000039461.12 ENSMUSG00000039461 ENSMUST00000195615 Tcta protein_coding Interval_112614 chr4 43575280 43575780 + 0 NA intron (ENSMUSG00000028467.15, intron 1 of 14) protein_coding-intron (ENSMUSG00000028467.15, intron 1 of 16) 3007 ENSMUSG00000028467.15 ENSMUSG00000028467 ENSMUST00000130443 Gba2 protein_coding Interval_114008 chr4 62407315 62409267 + 0 NA promoter-TSS (ENSMUSG00000066148.3) protein_coding-promoter-TSS (ENSMUSG00000066148.3) -2777 ENSMUSG00000066149.11 ENSMUSG00000066149 ENSMUST00000156854 Cdc26 protein_coding Interval_92397 chr2 59521905 59524819 + 0 NA Intergenic Intergenic 38693 ENSMUSG00000026989.5 ENSMUSG00000026989 ENSMUST00000144415 Dapl1 protein_coding Interval_121454 chr4 155908665 155908860 + 0 NA Intergenic Intergenic -2868 ENSMUSG00000096174.1 ENSMUSG00000096174 ENSMUST00000178126 Gm22991 miRNA Interval_26776 chr11 60416647 60418287 + 0 NA promoter-TSS (ENSMUSG00000042709.15) protein_coding-promoter-TSS (ENSMUSG00000042709.15) 322 ENSMUSG00000018415.14 ENSMUSG00000018415 ENSMUST00000070681 Gid4 protein_coding Interval_94500 chr2 91704228 91704540 + 0 NA intron (ENSMUSG00000027244.14, intron 1 of 15) protein_coding-intron (ENSMUSG00000027244.14, intron 1 of 16) -6533 ENSMUSG00000027243.8 ENSMUSG00000027243 ENSMUST00000111322 Harbi1 protein_coding Interval_60029 chr15 64092838 64093435 + 0 NA intron (ENSMUSG00000022377.16, intron 29 of 30) protein_coding-intron (ENSMUSG00000022377.16, intron 29 of 30) -5181 ENSMUSG00000093695.2 ENSMUSG00000093695 ENSMUST00000228817 Gm20717 antisense Interval_152941 chr7 139943497 139946293 + 0 NA exon (ENSMUSG00000047751.9, exon 2 of 2) protein_coding-exon (ENSMUSG00000047751.9, exon 2 of 2) 1106 ENSMUSG00000047751.9 ENSMUSG00000047751 ENSMUST00000168457 Utf1 protein_coding Interval_23936 chr11 28576234 28577028 + 0 NA promoter-TSS (ENSMUSG00000032878.16) protein_coding-promoter-TSS (ENSMUSG00000032878.16) -104933 ENSMUSG00000084966.1 ENSMUSG00000084966 ENSMUST00000146554 2810471M01Rik lincRNA Interval_80422 chr18 42065320 42066682 + 0 NA intron (ENSMUSG00000057719.11, intron 1 of 7) protein_coding-intron (ENSMUSG00000057719.11, intron 1 of 8) -66952 ENSMUSG00000073574.4 ENSMUSG00000073574 ENSMUST00000097591 Grxcr2 protein_coding Interval_123644 chr5 34235995 34236535 + 0 NA intron (ENSMUSG00000037224.15, intron 2 of 3) protein_coding-intron (ENSMUSG00000037224.15, intron 2 of 12) -3709 ENSMUSG00000037224.15 ENSMUSG00000037224 ENSMUST00000114368 Zfyve28 protein_coding Interval_129827 chr5 122602406 122602631 + 0 NA intron (ENSMUSG00000029469.14, intron 6 of 6) protein_coding-intron (ENSMUSG00000029469.14, intron 6 of 18) 4851 ENSMUSG00000029469.14 ENSMUSG00000029469 ENSMUST00000136024 Ift81 protein_coding Interval_133551 chr6 6556115 6556369 + 0 NA Intergenic Intergenic 22421 ENSMUSG00000042541.10 ENSMUSG00000042541 ENSMUST00000205180 Sem1 protein_coding Interval_139369 chr6 99549451 99549838 + 0 NA intron (ENSMUSG00000030068.4, intron 1 of 1) protein_coding-intron (ENSMUSG00000030068.4, intron 3 of 5) -26247 ENSMUSG00000084547.1 ENSMUSG00000084547 ENSMUST00000122598 Gm24936 misc_RNA Interval_131129 chr5 135318794 135319405 + 0 NA intron (ENSMUSG00000040013.11, intron 7 of 7) protein_coding-intron (ENSMUSG00000040013.11, intron 8 of 8) 30915 ENSMUSG00000040013.11 ENSMUSG00000040013 ENSMUST00000201534 Fkbp6 protein_coding Interval_79541 chr18 33378107 33378431 + 0 NA Intergenic Intergenic 6686 ENSMUSG00000117730.1 ENSMUSG00000117730 ENSMUST00000237135 Gm5503 processed_pseudogene Interval_6961 chr1 121398122 121399174 + 0 NA Intergenic Intergenic -32427 ENSMUSG00000026339.18 ENSMUSG00000026339 ENSMUST00000152959 Ccdc93 protein_coding Interval_61776 chr15 84063155 84063354 + 0 NA intron (ENSMUSG00000022441.17, intron 1 of 31) protein_coding-intron (ENSMUSG00000022441.17, intron 1 of 2) 32915 ENSMUSG00000081925.1 ENSMUSG00000081925 ENSMUST00000117961 Rpl31-ps22 processed_pseudogene Interval_94892 chr2 100948584 100949212 + 0 NA Intergenic Intergenic -320855 ENSMUSG00000095203.1 ENSMUSG00000095203 ENSMUST00000118584 Gm13810 processed_pseudogene Interval_43426 chr13 30687912 30688284 + 0 NA intron (ENSMUSG00000069255.13, intron 3 of 5) protein_coding-intron (ENSMUSG00000069255.13, intron 3 of 7) 28026 ENSMUSG00000069255.13 ENSMUSG00000069255 ENSMUST00000095914 Dusp22 protein_coding Interval_101102 chr2 177956810 177957699 + 0 NA promoter-TSS (ENSMUSG00000078862.10) protein_coding-promoter-TSS (ENSMUSG00000078862.10) -3570 ENSMUSG00000078862.10 ENSMUSG00000078862 ENSMUST00000108928 Gm14326 protein_coding Interval_40453 chr12 104967561 104968159 + 0 NA intron (ENSMUSG00000054150.12, intron 4 of 17) protein_coding-intron (ENSMUSG00000054150.12, intron 3 of 16) 30817 ENSMUSG00000054150.12 ENSMUSG00000054150 ENSMUST00000095439 Syne3 protein_coding Interval_80962 chr18 51212881 51213193 + 0 NA intron (ENSMUSG00000073565.5, intron 1 of 2) protein_coding-intron (ENSMUSG00000073565.5, intron 1 of 1) 41238 ENSMUSG00000095482.1 ENSMUSG00000095482 ENSMUST00000082886 Gm25739 snRNA Interval_3710 chr1 61526002 61526574 + 0 NA Intergenic Intergenic -19594 ENSMUSG00000102168.1 ENSMUSG00000102168 ENSMUST00000194422 Gm36943 TEC Interval_169942 chr9 103110941 103113173 + 0 NA exon (ENSMUSG00000032549.7, exon 1 of 8) protein_coding-exon (ENSMUSG00000032549.7, exon 1 of 8) 270 ENSMUSG00000032549.7 ENSMUSG00000032549 ENSMUST00000035155 Rab6b protein_coding Interval_118775 chr4 133639771 133640245 + 0 NA intron (ENSMUSG00000037553.14, intron 1 of 1) protein_coding-intron (ENSMUSG00000037553.14, intron 1 of 1) -1325 ENSMUSG00000083885.1 ENSMUSG00000083885 ENSMUST00000119668 Gm13213 processed_pseudogene Interval_116557 chr4 115594389 115594747 + 0 NA Intergenic Intergenic -6401 ENSMUSG00000063929.6 ENSMUSG00000063929 ENSMUST00000084342 Cyp4a32 protein_coding Interval_101830 chr3 9817442 9817693 + 0 NA intron (ENSMUSG00000027508.15, intron 1 of 2) protein_coding-intron (ENSMUSG00000027508.15, intron 1 of 7) 12161 ENSMUSG00000088004.1 ENSMUSG00000088004 ENSMUST00000157379 Gm24786 rRNA Interval_172582 chrX 37076663 37077184 + 0 NA Intergenic Intergenic -4661 ENSMUSG00000093059.2 ENSMUSG00000093059 ENSMUST00000175318 Gm24809 misc_RNA Interval_114048 chr4 62743963 62744500 + 0 NA Intergenic Intergenic -16694 ENSMUSG00000086139.1 ENSMUSG00000086139 ENSMUST00000143618 Gm11211 lincRNA Interval_25319 chr11 46291035 46291387 + 0 NA TTS (ENSMUSG00000020340.16) protein_coding-TTS (ENSMUSG00000020340.16) 21147 ENSMUSG00000020340.16 ENSMUSG00000020340 ENSMUST00000129474 Cyfip2 protein_coding Interval_170696 chr9 110151586 110152838 + 0 NA intron (ENSMUSG00000032481.17, intron 5 of 24) protein_coding-intron (ENSMUSG00000032481.17, intron 5 of 27) -30396 ENSMUSG00000105187.1 ENSMUSG00000105187 ENSMUST00000196828 Gm23377 snoRNA Interval_152918 chr7 139725621 139726031 + 0 NA Intergenic Intergenic 6427 ENSMUSG00000056777.5 ENSMUSG00000056777 ENSMUST00000072532 Rpl21-ps13 processed_pseudogene Interval_421 chr1 5129260 5129821 + 0 NA intron (ENSMUSG00000033793.12, intron 8 of 10) protein_coding-intron (ENSMUSG00000033793.12, intron 9 of 13) 46408 ENSMUSG00000033793.12 ENSMUSG00000033793 ENSMUST00000192142 Atp6v1h protein_coding Interval_28031 chr11 72361528 72362413 + 0 NA promoter-TSS (ENSMUSG00000020799.16) protein_coding-promoter-TSS (ENSMUSG00000020799.16) -97 ENSMUSG00000020799.16 ENSMUSG00000020799 ENSMUST00000021155 Tekt1 protein_coding Interval_120375 chr4 148188721 148189105 + 0 NA Intergenic Intergenic 28292 ENSMUSG00000041556.8 ENSMUSG00000041556 ENSMUST00000047951 Fbxo2 protein_coding Interval_110434 chr3 158076586 158077268 + 0 NA promoter-TSS (ENSMUSG00000104597.1) antisense-promoter-TSS (ENSMUSG00000104597.1) -815 ENSMUSG00000104597.1 ENSMUSG00000104597 ENSMUST00000200255 B230334C09Rik antisense Interval_154618 chr8 22089485 22089751 + 0 NA TTS (ENSMUSG00000037738.11) protein_coding-TTS (ENSMUSG00000037738.11) 18275 ENSMUSG00000037738.11 ENSMUSG00000037738 ENSMUST00000213644 Nek5 protein_coding Interval_150589 chr7 112678501 112680103 + 0 NA promoter-TSS (ENSMUSG00000055320.18) protein_coding-promoter-TSS (ENSMUSG00000055320.18) -18 ENSMUSG00000055320.18 ENSMUSG00000055320 ENSMUST00000210510 Tead1 protein_coding Interval_1081 chr1 15264199 15265095 + 0 NA Intergenic Intergenic 5150 ENSMUSG00000073737.3 ENSMUSG00000073737 ENSMUST00000086739 Gm10566 processed_pseudogene Interval_98676 chr2 154190941 154191189 + 0 NA intron (ENSMUSG00000027485.15, intron 1 of 13) protein_coding-intron (ENSMUSG00000027485.15, intron 1 of 15) 242 ENSMUSG00000027485.15 ENSMUSG00000027485 ENSMUST00000028987 Bpifb1 protein_coding Interval_60281 chr15 72158382 72159104 + 0 NA Intergenic Intergenic -2603 ENSMUSG00000116068.1 ENSMUSG00000116068 ENSMUST00000229509 Gm49457 lincRNA Interval_172969 chrX 58041958 58043069 + 0 NA TTS (ENSMUSG00000067860.11) protein_coding-TTS (ENSMUSG00000067860.11) 19813 ENSMUSG00000067860.11 ENSMUSG00000067860 ENSMUST00000088629 Zic3 protein_coding Interval_49076 chr13 107755350 107755558 + 0 NA intron (ENSMUSG00000032846.10, intron 4 of 12) protein_coding-intron (ENSMUSG00000032846.10, intron 5 of 14) 68057 ENSMUSG00000102000.6 ENSMUSG00000102000 ENSMUST00000188490 1700006H21Rik lincRNA Interval_83464 chr18 86066391 86066638 + 0 NA Intergenic Intergenic 30730 ENSMUSG00000117906.1 ENSMUSG00000117906 ENSMUST00000237292 Gm50381 processed_pseudogene Interval_113969 chr4 62097287 62097529 + 0 NA Intergenic Intergenic 9120 ENSMUSG00000085404.1 ENSMUSG00000085404 ENSMUST00000134190 Gm12909 antisense Interval_106729 chr3 100142611 100142824 + 0 NA exon (ENSMUSG00000033285.15, exon 17 of 17) protein_coding-exon (ENSMUSG00000033285.15, exon 17 of 17) 19680 ENSMUSG00000033285.15 ENSMUSG00000033285 ENSMUST00000197602 Wdr3 protein_coding Interval_55992 chr14 103720519 103721111 + 0 NA Intergenic Intergenic -21373 ENSMUSG00000089707.1 ENSMUSG00000089707 ENSMUST00000160117 Slain1os antisense Interval_143890 chr7 16965899 16966552 + 0 NA Intergenic Intergenic 6546 ENSMUSG00000041141.7 ENSMUSG00000041141 ENSMUST00000038163 Pnmal1 protein_coding Interval_136447 chr6 54564594 54566771 + 0 NA intron (ENSMUSG00000019124.10, intron 1 of 7) protein_coding-intron (ENSMUSG00000019124.10, intron 1 of 7) 27466 ENSMUSG00000038074.16 ENSMUSG00000038074 ENSMUST00000154907 Fkbp14 protein_coding Interval_92941 chr2 68869892 68870541 + 0 NA intron (ENSMUSG00000027035.10, intron 1 of 10) protein_coding-intron (ENSMUSG00000027035.10, intron 1 of 9) 8774 ENSMUSG00000027035.10 ENSMUSG00000027035 ENSMUST00000141498 Cers6 protein_coding Interval_170207 chr9 106198973 106199923 + 0 NA promoter-TSS (ENSMUSG00000020253.15) protein_coding-promoter-TSS (ENSMUSG00000020253.15) -1650 ENSMUSG00000020253.15 ENSMUSG00000020253 ENSMUST00000152359 Ppm1m protein_coding Interval_79279 chr18 29638543 29639383 + 0 NA Intergenic Intergenic 18633 ENSMUSG00000117626.1 ENSMUSG00000117626 ENSMUST00000234976 Gm7917 processed_pseudogene Interval_49099 chr13 108017070 108018403 + 0 NA intron (ENSMUSG00000068184.7, intron 2 of 3) protein_coding-intron (ENSMUSG00000068184.7, intron 2 of 3) 21451 ENSMUSG00000114627.1 ENSMUSG00000114627 ENSMUST00000224800 B230220B15Rik lincRNA Interval_167327 chr9 67411134 67411764 + 0 NA intron (ENSMUSG00000052698.15, intron 1 of 5) protein_coding-intron (ENSMUSG00000052698.15, intron 2 of 57) -13054 ENSMUSG00000111412.1 ENSMUSG00000111412 ENSMUST00000216972 Gm47047 antisense Interval_75046 chr17 62247866 62248228 + 0 NA Intergenic Intergenic 188010 ENSMUSG00000117066.1 ENSMUSG00000117066 ENSMUST00000232942 Gm49860 lincRNA Interval_67007 chr16 39453268 39454106 + 0 NA intron (ENSMUSG00000116573.1, intron 2 of 3) lincRNA-intron (ENSMUSG00000116573.1, intron 2 of 3) -1328 ENSMUSG00000095894.1 ENSMUSG00000095894 ENSMUST00000116737 Gm24795 miRNA Interval_171135 chr9 114699501 114700136 + 0 NA intron (ENSMUSG00000032435.9, intron 2 of 2) protein_coding-intron (ENSMUSG00000032435.9, intron 2 of 12) 11028 ENSMUSG00000032435.9 ENSMUSG00000032435 ENSMUST00000047404 Dync1li1 protein_coding Interval_5531 chr1 89606521 89607274 + 0 NA intron (ENSMUSG00000055013.16, intron 2 of 16) protein_coding-intron (ENSMUSG00000055013.16, intron 2 of 17) 38132 ENSMUSG00000101662.1 ENSMUSG00000101662 ENSMUST00000191576 Gm28499 sense_intronic Interval_977 chr1 13606245 13607260 + 0 NA Intergenic Intergenic -16877 ENSMUSG00000025935.10 ENSMUSG00000025935 ENSMUST00000188377 Tram1 protein_coding Interval_8420 chr1 139070007 139070234 + 0 NA promoter-TSS (ENSMUSG00000105936.1) TEC-promoter-TSS (ENSMUSG00000105936.1) -93 ENSMUSG00000105936.1 ENSMUSG00000105936 ENSMUST00000196474 Gm43544 TEC Interval_98385 chr2 151996354 151997049 + 0 NA intron (ENSMUSG00000027463.14, intron 1 of 3) protein_coding-intron (ENSMUSG00000027463.14, intron 1 of 4) -3164 ENSMUSG00000027463.14 ENSMUSG00000027463 ENSMUST00000109858 Slc52a3 protein_coding Interval_12609 chr10 3886253 3886547 + 0 NA intron (ENSMUSG00000040624.18, intron 2 of 15) protein_coding-intron (ENSMUSG00000040624.18, intron 2 of 15) -16793 ENSMUSG00000082123.1 ENSMUSG00000082123 ENSMUST00000117631 Gm16149 processed_pseudogene Interval_167353 chr9 67735393 67736037 + 0 NA Intergenic Intergenic -6138 ENSMUSG00000098446.1 ENSMUSG00000098446 ENSMUST00000183710 Mir7242 miRNA Interval_167910 chr9 74117804 74118013 + 0 NA intron (ENSMUSG00000044976.17, intron 1 of 19) protein_coding-intron (ENSMUSG00000044976.17, intron 1 of 19) 7552 ENSMUSG00000044976.17 ENSMUSG00000044976 ENSMUST00000149439 Wdr72 protein_coding Interval_37682 chr12 71073089 71074195 + 0 NA intron (ENSMUSG00000048118.17, intron 9 of 9) protein_coding-intron (ENSMUSG00000048118.17, intron 19 of 23) 25301 ENSMUSG00000048118.17 ENSMUSG00000048118 ENSMUST00000135709 Arid4a protein_coding Interval_93993 chr2 80549745 80549951 + 0 NA exon (ENSMUSG00000081487.1, exon 1 of 1) processed_pseudogene-exon (ENSMUSG00000081487.1, exon 1 of 1) 548 ENSMUSG00000081487.1 ENSMUSG00000081487 ENSMUST00000119360 Gm13689 processed_pseudogene Interval_105857 chr3 89763812 89764997 + 0 NA exon (ENSMUSG00000027950.7, exon 1 of 6) protein_coding-exon (ENSMUSG00000027950.7, exon 1 of 6) 204 ENSMUSG00000027950.7 ENSMUSG00000027950 ENSMUST00000029562 Chrnb2 protein_coding Interval_87423 chr19 49958465 49958695 + 0 NA Intergenic Intergenic 72155 ENSMUSG00000062083.1 ENSMUSG00000062083 ENSMUST00000071866 Rpl13a-ps1 processed_pseudogene Interval_50299 chr14 11722179 11722474 + 0 NA intron (ENSMUSG00000021745.14, intron 2 of 3) protein_coding-intron (ENSMUSG00000021745.14, intron 2 of 29) -45617 ENSMUSG00000114310.1 ENSMUSG00000114310 ENSMUST00000225152 Gm48602 TEC Interval_168486 chr9 82279652 82279823 + 0 NA Intergenic Intergenic 19444 ENSMUSG00000099266.1 ENSMUSG00000099266 ENSMUST00000183678 1700063H06Rik lincRNA Interval_126328 chr5 86735841 86736068 + 0 NA intron (ENSMUSG00000105704.1, intron 1 of 4) protein_coding-intron (ENSMUSG00000054537.8, intron 1 of 9) 7048 ENSMUSG00000105704.1 ENSMUSG00000105704 ENSMUST00000198859 Gm43055 lincRNA Interval_126832 chr5 93381641 93382145 + 0 NA Intergenic Intergenic 11198 ENSMUSG00000053208.10 ENSMUSG00000053208 ENSMUST00000128468 Kat2b-ps processed_pseudogene Interval_166416 chr9 59281298 59282997 + 0 NA Intergenic Intergenic -9411 ENSMUSG00000025236.11 ENSMUSG00000025236 ENSMUST00000215994 Adpgk protein_coding Interval_22286 chr11 8544121 8544788 + 0 NA intron (ENSMUSG00000020422.14, intron 8 of 30) protein_coding-intron (ENSMUSG00000020422.14, intron 8 of 30) 120227 ENSMUSG00000020422.14 ENSMUSG00000020422 ENSMUST00000134823 Tns3 protein_coding Interval_162814 chr9 9393512 9395644 + 0 NA intron (ENSMUSG00000111061.1, intron 2 of 3) lincRNA-intron (ENSMUSG00000111061.1, intron 2 of 3) -40014 ENSMUSG00000111317.1 ENSMUSG00000111317 ENSMUST00000217395 Gm47333 processed_pseudogene Interval_18961 chr10 93425276 93426182 + 0 NA Intergenic Intergenic -7378 ENSMUSG00000098679.1 ENSMUSG00000098679 ENSMUST00000183565 Mir7688 miRNA Interval_96764 chr2 127889135 127890004 + 0 NA intron (ENSMUSG00000027380.10, intron 8 of 17) protein_coding-intron (ENSMUSG00000027380.10, intron 8 of 17) -2419 ENSMUSG00000093203.1 ENSMUSG00000093203 ENSMUST00000175462 Gm22411 miRNA Interval_25383 chr11 47017040 47017235 + 0 NA intron (ENSMUSG00000020354.15, intron 6 of 7) protein_coding-intron (ENSMUSG00000020354.15, intron 6 of 7) 142724 ENSMUSG00000082818.1 ENSMUSG00000082818 ENSMUST00000122081 Gm12175 processed_pseudogene Interval_3048 chr1 52656169 52657213 + 0 NA promoter-TSS (ENSMUSG00000103630.1) TEC-promoter-TSS (ENSMUSG00000103630.1) -799 ENSMUSG00000103630.1 ENSMUSG00000103630 ENSMUST00000191873 Gm37242 TEC Interval_53621 chr14 60176614 60177981 + 0 NA intron (ENSMUSG00000021983.16, intron 1 of 6) protein_coding-intron (ENSMUSG00000021983.16, intron 1 of 6) 19846 ENSMUSG00000021983.16 ENSMUSG00000021983 ENSMUST00000152688 Atp8a2 protein_coding Interval_151856 chr7 127139857 127141269 + 0 NA Intergenic Intergenic -3997 ENSMUSG00000051457.7 ENSMUSG00000051457 ENSMUST00000049931 Spn protein_coding Interval_10806 chr1 175345021 175345482 + 0 NA intron (ENSMUSG00000026527.13, intron 2 of 17) protein_coding-intron (ENSMUSG00000026527.13, intron 1 of 15) 35425 ENSMUSG00000104343.1 ENSMUSG00000104343 ENSMUST00000194955 5730408A14Rik TEC Interval_33357 chr11 116106363 116107085 + 0 NA intron (ENSMUSG00000020773.11, intron 1 of 1) protein_coding-intron (ENSMUSG00000020773.11, intron 5 of 5) 359 ENSMUSG00000020773.11 ENSMUSG00000020773 ENSMUST00000133039 Trim47 protein_coding Interval_136769 chr6 59457604 59458025 + 0 NA Intergenic Intergenic -31520 ENSMUSG00000045441.5 ENSMUSG00000045441 ENSMUST00000051065 Gprin3 protein_coding Interval_151833 chr7 126996143 126997893 + 0 NA intron (ENSMUSG00000030681.18, intron 5 of 14) protein_coding-intron (ENSMUSG00000030681.18, intron 5 of 14) 17532 ENSMUSG00000030681.18 ENSMUSG00000030681 ENSMUST00000206511 Mvp protein_coding Interval_91779 chr2 49493636 49494133 + 0 NA intron (ENSMUSG00000069495.12, intron 2 of 13) protein_coding-intron (ENSMUSG00000069495.12, intron 2 of 13) -34991 ENSMUSG00000069495.12 ENSMUSG00000069495 ENSMUST00000152485 Epc2 protein_coding Interval_30200 chr11 90500272 90500472 + 0 NA intron (ENSMUSG00000020546.14, intron 16 of 17) protein_coding-intron (ENSMUSG00000020546.14, intron 4 of 4) 16944 ENSMUSG00000083268.1 ENSMUSG00000083268 ENSMUST00000118146 Gm11511 processed_pseudogene Interval_57833 chr15 22699152 22700653 + 0 NA intron (ENSMUSG00000040420.15, intron 1 of 6) protein_coding-intron (ENSMUSG00000040420.15, intron 1 of 6) 14928 ENSMUSG00000021927.7 ENSMUSG00000021927 ENSMUST00000022493 Hnrnpa1l2-ps2 processed_pseudogene Interval_58317 chr15 32305526 32305805 + 0 NA intron (ENSMUSG00000022231.10, intron 1 of 7) protein_coding-intron (ENSMUSG00000022231.10, intron 1 of 22) 60840 ENSMUSG00000022231.10 ENSMUSG00000022231 ENSMUST00000227429 Sema5a protein_coding Interval_87007 chr19 45511153 45512172 + 0 NA intron (ENSMUSG00000025217.15, intron 7 of 13) protein_coding-intron (ENSMUSG00000025217.15, intron 6 of 14) 48869 ENSMUSG00000025218.6 ENSMUSG00000025218 ENSMUST00000026239 Poll protein_coding Interval_73180 chr17 35310470 35312020 + 0 NA Intergenic Intergenic -4928 ENSMUSG00000092438.1 ENSMUSG00000092438 ENSMUST00000172937 Gm18734 unprocessed_pseudogene Interval_80305 chr18 39022845 39023089 + 0 NA intron (ENSMUSG00000036452.18, intron 1 of 22) protein_coding-intron (ENSMUSG00000036452.18, intron 1 of 22) -28775 ENSMUSG00000086991.1 ENSMUSG00000086991 ENSMUST00000131421 Gm15334 antisense Interval_134842 chr6 32212251 32212530 + 0 NA intron (ENSMUSG00000029765.12, intron 12 of 31) protein_coding-intron (ENSMUSG00000029765.12, intron 12 of 31) 12809 ENSMUSG00000029765.12 ENSMUSG00000029765 ENSMUST00000200732 Plxna4 protein_coding Interval_136460 chr6 54672615 54674170 + 0 NA Intergenic Intergenic -8232 ENSMUSG00000038065.13 ENSMUSG00000038065 ENSMUST00000185518 Mturn protein_coding Interval_108906 chr3 133167885 133168080 + 0 NA intron (ENSMUSG00000040969.14, intron 3 of 3) protein_coding-intron (ENSMUSG00000040969.14, intron 3 of 13) 66967 ENSMUSG00000040969.14 ENSMUSG00000040969 ENSMUST00000161932 Arhgef38 protein_coding Interval_140237 chr6 115731150 115732864 + 0 NA intron (ENSMUSG00000059900.14, intron 7 of 10) protein_coding-intron (ENSMUSG00000059900.14, intron 8 of 11) -8175 ENSMUSG00000088358.1 ENSMUSG00000088358 ENSMUST00000157733 Gm24008 snoRNA Interval_107716 chr3 111868237 111869033 + 0 NA Intergenic Intergenic -13268 ENSMUSG00000104543.1 ENSMUSG00000104543 ENSMUST00000198910 Gm6602 lincRNA Interval_150796 chr7 114700091 114700277 + 0 NA promoter-TSS (ENSMUSG00000108349.1) processed_pseudogene-promoter-TSS (ENSMUSG00000108349.1) -540 ENSMUSG00000108349.1 ENSMUSG00000108349 ENSMUST00000206729 Gm18599 processed_pseudogene Interval_21010 chr10 123208248 123209737 + 0 NA Intergenic Intergenic -11997 ENSMUSG00000020124.10 ENSMUSG00000020124 ENSMUST00000219619 Usp15 protein_coding Interval_99358 chr2 160113409 160113909 + 0 NA Intergenic Intergenic 97006 ENSMUSG00000086653.1 ENSMUSG00000086653 ENSMUST00000140319 9130015L21Rik lincRNA Interval_109265 chr3 138488778 138490122 + 0 NA promoter-TSS (ENSMUSG00000005813.12) protein_coding-promoter-TSS (ENSMUSG00000005813.12) 6643 ENSMUSG00000105751.1 ENSMUSG00000105751 ENSMUST00000197516 Gm43724 processed_pseudogene Interval_63193 chr15 99663981 99665462 + 0 NA Intergenic Intergenic -13109 ENSMUSG00000023015.14 ENSMUSG00000023015 ENSMUST00000109581 Racgap1 protein_coding Interval_138943 chr6 93682730 93683261 + 0 NA TTS (ENSMUSG00000045095.16) protein_coding-TTS (ENSMUSG00000045095.16) -32770 ENSMUSG00000107739.1 ENSMUSG00000107739 ENSMUST00000203479 Gm7812 processed_pseudogene Interval_99688 chr2 164259094 164259356 + 0 NA Intergenic Intergenic -2585 ENSMUSG00000050383.5 ENSMUSG00000050383 ENSMUST00000063132 Svs3b protein_coding Interval_82260 chr18 69727344 69727627 + 0 NA Intergenic Intergenic 50560 ENSMUSG00000064706.1 ENSMUSG00000064706 ENSMUST00000082772 Gm22508 misc_RNA Interval_174841 chrX 169388760 169389003 + 0 NA Intergenic Intergenic 20692 ENSMUSG00000081137.3 ENSMUSG00000081137 ENSMUST00000119987 BC022960 transcribed_processed_pseudogene Interval_53684 chr14 60864033 60864468 + 0 NA exon (ENSMUSG00000021993.10, exon 17 of 17) protein_coding-exon (ENSMUSG00000021993.10, exon 17 of 17) 79668 ENSMUSG00000021993.10 ENSMUSG00000021993 ENSMUST00000223709 Mipep protein_coding Interval_112919 chr4 46063772 46064586 + 0 NA intron (ENSMUSG00000028328.13, intron 2 of 9) protein_coding-intron (ENSMUSG00000028328.13, intron 2 of 9) 24970 ENSMUSG00000028328.13 ENSMUSG00000028328 ENSMUST00000155730 Tmod1 protein_coding Interval_38672 chr12 80955506 80956642 + 0 NA exon (ENSMUSG00000021135.8, exon 4 of 5) protein_coding-exon (ENSMUSG00000021135.8, exon 4 of 5) 10542 ENSMUSG00000021134.17 ENSMUSG00000021134 ENSMUST00000151036 Srsf5 protein_coding Interval_129001 chr5 116556583 116557709 + 0 NA intron (ENSMUSG00000063919.11, intron 1 of 12) protein_coding-intron (ENSMUSG00000063919.11, intron 1 of 12) 16349 ENSMUSG00000106914.1 ENSMUSG00000106914 ENSMUST00000201262 Gm42854 sense_intronic Interval_111228 chr4 15179402 15179869 + 0 NA Intergenic Intergenic 25243 ENSMUSG00000083073.1 ENSMUSG00000083073 ENSMUST00000117886 Gm11845 processed_pseudogene Interval_16664 chr10 66917747 66919069 + 0 NA promoter-TSS (ENSMUSG00000097134.2) lincRNA-promoter-TSS (ENSMUSG00000097134.2) -669 ENSMUSG00000097134.2 ENSMUSG00000097134 ENSMUST00000219021 1110002J07Rik lincRNA Interval_150180 chr7 107654336 107654815 + 0 NA exon (ENSMUSG00000036528.16, exon 3 of 3) protein_coding-exon (ENSMUSG00000036528.16, exon 3 of 3) -10736 ENSMUSG00000036528.16 ENSMUSG00000036528 ENSMUST00000208159 Ppfibp2 protein_coding Interval_130085 chr5 124161989 124163003 + 0 NA intron (ENSMUSG00000029406.15, intron 2 of 24) protein_coding-intron (ENSMUSG00000029406.15, intron 1 of 23) -33146 ENSMUSG00000089842.2 ENSMUSG00000089842 ENSMUST00000198466 Pitpnm2os2 antisense Interval_91606 chr2 44535777 44536059 + 0 NA Intergenic Intergenic 106983 ENSMUSG00000088124.1 ENSMUSG00000088124 ENSMUST00000157499 Gm22867 snRNA Interval_14642 chr10 37551177 37551968 + 0 NA Intergenic Intergenic -98892 ENSMUSG00000111549.1 ENSMUSG00000111549 ENSMUST00000215235 Gm48172 processed_pseudogene Interval_78155 chr18 9449297 9450661 + 0 NA promoter-TSS (ENSMUSG00000024286.8) protein_coding-promoter-TSS (ENSMUSG00000024286.8) -293 ENSMUSG00000024286.8 ENSMUSG00000024286 ENSMUST00000234382 Ccny protein_coding Interval_48440 chr13 99040238 99040771 + 0 NA exon (ENSMUSG00000089488.1, exon 1 of 1) misc_RNA-exon (ENSMUSG00000089488.1, exon 1 of 1) 146 ENSMUSG00000089488.1 ENSMUSG00000089488 ENSMUST00000158863 Gm24733 misc_RNA Interval_127902 chr5 108758374 108758805 + 0 NA intron (ENSMUSG00000055385.12, intron 3 of 11) protein_coding-intron (ENSMUSG00000055385.12, intron 2 of 8) -5253 ENSMUSG00000101762.1 ENSMUSG00000101762 ENSMUST00000189659 1700047L14Rik antisense Interval_103065 chr3 34821155 34821561 + 0 NA Intergenic Intergenic -5258 ENSMUSG00000114832.2 ENSMUSG00000114832 ENSMUST00000238552 Gm21388 lincRNA Interval_66497 chr16 34332026 34333217 + 0 NA intron (ENSMUSG00000061751.16, intron 5 of 30) protein_coding-intron (ENSMUSG00000061751.16, intron 5 of 59) -236593 ENSMUSG00000061751.16 ENSMUSG00000061751 ENSMUST00000132569 Kalrn protein_coding Interval_110403 chr3 157841192 157841527 + 0 NA Intergenic Intergenic -23564 ENSMUSG00000106419.1 ENSMUSG00000106419 ENSMUST00000198658 Gm5550 processed_pseudogene Interval_138595 chr6 90034816 90036239 + 0 NA TTS (ENSMUSG00000057592.1) protein_coding-TTS (ENSMUSG00000057592.1) 1314 ENSMUSG00000057592.1 ENSMUSG00000057592 ENSMUST00000073415 Vmn1r48 protein_coding Interval_21910 chr11 5142907 5143285 + 0 NA intron (ENSMUSG00000034164.17, intron 3 of 14) protein_coding-intron (ENSMUSG00000034164.17, intron 3 of 14) 9144 ENSMUSG00000034164.17 ENSMUSG00000034164 ENSMUST00000138551 Emid1 protein_coding Interval_133890 chr6 14419904 14420471 + 0 NA Intergenic Intergenic -30136 ENSMUSG00000107403.1 ENSMUSG00000107403 ENSMUST00000204077 Gm8820 processed_pseudogene Interval_39461 chr12 87788689 87790174 + 0 NA Intergenic Intergenic 3148 ENSMUSG00000114101.1 ENSMUSG00000114101 ENSMUST00000222851 Gm48152 processed_pseudogene Interval_93851 chr2 77486473 77488083 + 0 NA intron (ENSMUSG00000027016.17, intron 2 of 4) protein_coding-intron (ENSMUSG00000027016.17, intron 2 of 7) 24609 ENSMUSG00000085845.7 ENSMUSG00000085845 ENSMUST00000126572 Gm13944 antisense Interval_88822 chr2 11459779 11460239 + 0 NA Intergenic Intergenic 39785 ENSMUSG00000082314.2 ENSMUSG00000082314 ENSMUST00000117854 Gm13296 processed_pseudogene Interval_103017 chr3 34482006 34482425 + 0 NA promoter-TSS (ENSMUSG00000099437.1) lincRNA-promoter-TSS (ENSMUSG00000099437.1) -8 ENSMUSG00000099437.1 ENSMUSG00000099437 ENSMUST00000188411 Gm29135 lincRNA Interval_127347 chr5 103322983 103323350 + 0 NA Intergenic Intergenic -20806 ENSMUSG00000104808.1 ENSMUSG00000104808 ENSMUST00000197564 Gm42619 TEC Interval_97853 chr2 144452256 144453035 + 0 NA Intergenic Intergenic -11750 ENSMUSG00000083674.3 ENSMUSG00000083674 ENSMUST00000137929 Zfp133-ps transcribed_unitary_pseudogene Interval_104485 chr3 66566144 66566898 + 0 NA Intergenic Intergenic -2970 ENSMUSG00000103600.1 ENSMUSG00000103600 ENSMUST00000193914 Gm17952 processed_pseudogene Interval_79591 chr18 33910498 33910762 + 0 NA intron (ENSMUSG00000024376.7, intron 3 of 23) protein_coding-intron (ENSMUSG00000024376.7, intron 3 of 23) 96336 ENSMUSG00000024376.7 ENSMUSG00000024376 ENSMUST00000237971 Epb41l4a protein_coding Interval_75010 chr17 60167764 60167966 + 0 NA Intergenic Intergenic -36990 ENSMUSG00000101606.1 ENSMUSG00000101606 ENSMUST00000190184 Gm29051 lincRNA Interval_146056 chr7 43572545 43573665 + 0 NA exon (ENSMUSG00000056592.14, exon 4 of 4) protein_coding-exon (ENSMUSG00000056592.14, exon 4 of 4) -6514 ENSMUSG00000030469.10 ENSMUSG00000030469 ENSMUST00000147075 Zfp719 protein_coding Interval_97825 chr2 144287342 144287676 + 0 NA Intergenic Intergenic 16846 ENSMUSG00000027424.11 ENSMUSG00000027424 ENSMUST00000110027 Mgme1 protein_coding Interval_54724 chr14 73597109 73597586 + 0 NA Intergenic Intergenic 44715 ENSMUSG00000022110.13 ENSMUSG00000022110 ENSMUST00000159165 Sucla2 protein_coding Interval_135441 chr6 39386704 39386976 + 0 NA intron (ENSMUSG00000029923.4, intron 2 of 3) protein_coding-intron (ENSMUSG00000029923.4, intron 2 of 3) 5665 ENSMUSG00000029923.4 ENSMUSG00000029923 ENSMUST00000031986 Rab19 protein_coding Interval_6706 chr1 118895274 118895904 + 0 NA intron (ENSMUSG00000048402.14, intron 2 of 6) protein_coding-intron (ENSMUSG00000048402.14, intron 2 of 13) -58631 ENSMUSG00000098273.1 ENSMUSG00000098273 ENSMUST00000183982 Mir6346 miRNA Interval_37179 chr12 59205198 59206919 + 0 NA promoter-TSS (ENSMUSG00000035329.7) protein_coding-promoter-TSS (ENSMUSG00000035329.7) -1622 ENSMUSG00000035329.7 ENSMUSG00000035329 ENSMUST00000161351 Fbxo33 protein_coding Interval_14699 chr10 39133419 39134573 + 0 NA promoter-TSS (ENSMUSG00000019845.8) protein_coding-promoter-TSS (ENSMUSG00000019845.8) -31 ENSMUSG00000019845.8 ENSMUSG00000019845 ENSMUST00000214493 Tube1 protein_coding Interval_164297 chr9 35116315 35117688 + 0 NA promoter-TSS (ENSMUSG00000032038.7) protein_coding-promoter-TSS (ENSMUSG00000032038.7) 247 ENSMUSG00000070315.12 ENSMUSG00000070315 ENSMUST00000161136 4930581F22Rik processed_transcript Interval_23669 chr11 24273623 24274115 + 0 NA Intergenic Intergenic -71245 ENSMUSG00000086117.1 ENSMUSG00000086117 ENSMUST00000149592 Gm12065 lincRNA Interval_149905 chr7 102477149 102477837 + 0 NA exon (ENSMUSG00000044814.6, exon 1 of 1) protein_coding-exon (ENSMUSG00000044814.6, exon 1 of 1) 4186 ENSMUSG00000044814.6 ENSMUSG00000044814 ENSMUST00000061482 Olfr543 protein_coding Interval_39817 chr12 98702772 98704647 + 0 NA intron (ENSMUSG00000021009.15, intron 8 of 13) protein_coding-intron (ENSMUSG00000021009.15, intron 8 of 18) -19959 ENSMUSG00000021009.15 ENSMUSG00000021009 ENSMUST00000222071 Ptpn21 protein_coding Interval_167576 chr9 70570604 70571289 + 0 NA intron (ENSMUSG00000032212.10, intron 5 of 19) protein_coding-intron (ENSMUSG00000032212.10, intron 5 of 20) 28066 ENSMUSG00000032212.10 ENSMUSG00000032212 ENSMUST00000216881 Sltm protein_coding Interval_110649 chr4 5714594 5715929 + 0 NA intron (ENSMUSG00000049119.14, intron 2 of 3) protein_coding-intron (ENSMUSG00000049119.14, intron 1 of 2) -27459 ENSMUSG00000077392.1 ENSMUSG00000077392 ENSMUST00000104204 Gm24337 snoRNA Interval_63687 chr15 102829789 102830022 + 0 NA Intergenic Intergenic 32410 ENSMUSG00000116500.1 ENSMUSG00000116500 ENSMUST00000229994 Gm36560 lincRNA Interval_18237 chr10 84060532 84060832 + 0 NA intron (ENSMUSG00000111049.1, intron 2 of 4) lincRNA-intron (ENSMUSG00000111049.1, intron 2 of 4) -1076 ENSMUSG00000104317.1 ENSMUSG00000104317 ENSMUST00000195828 Gm37908 TEC Interval_164662 chr9 40405576 40406612 + 0 NA intron (ENSMUSG00000040111.17, intron 2 of 20) protein_coding-intron (ENSMUSG00000040111.17, intron 2 of 19) -39192 ENSMUSG00000110928.1 ENSMUSG00000110928 ENSMUST00000214407 Gm48114 TEC Interval_147614 chr7 70005397 70005910 + 0 NA Intergenic Intergenic -47749 ENSMUSG00000077166.1 ENSMUSG00000077166 ENSMUST00000103978 Gm24120 snoRNA Interval_171575 chr9 119297986 119298679 + 0 NA intron (ENSMUSG00000036737.12, intron 2 of 18) protein_coding-intron (ENSMUSG00000036737.12, intron 2 of 17) 8425 ENSMUSG00000088713.1 ENSMUSG00000088713 ENSMUST00000158088 Gm22729 snoRNA Interval_15858 chr10 58459485 58460173 + 0 NA TTS (ENSMUSG00000003226.7) protein_coding-TTS (ENSMUSG00000003226.7) 12634 ENSMUSG00000003226.7 ENSMUSG00000003226 ENSMUST00000220131 Ranbp2 protein_coding Interval_64308 chr16 10376953 10377772 + 0 NA intron (ENSMUSG00000039179.13, intron 5 of 5) protein_coding-intron (ENSMUSG00000039179.13, intron 5 of 6) 18086 ENSMUSG00000039179.13 ENSMUSG00000039179 ENSMUST00000115831 Tekt5 protein_coding Interval_168889 chr9 88406079 88406497 + 0 NA intron (ENSMUSG00000032422.18, intron 8 of 27) protein_coding-intron (ENSMUSG00000032422.18, intron 7 of 24) 15451 ENSMUSG00000066443.5 ENSMUSG00000066443 ENSMUST00000155008 Gm10163 processed_pseudogene Interval_19988 chr10 111699832 111700099 + 0 NA Intergenic Intergenic -25219 ENSMUSG00000112430.1 ENSMUSG00000112430 ENSMUST00000220039 Gm30624 lincRNA Interval_119060 chr4 135271931 135273574 + 0 NA promoter-TSS (ENSMUSG00000037242.8) protein_coding-promoter-TSS (ENSMUSG00000037242.8) 62 ENSMUSG00000037242.8 ENSMUSG00000037242 ENSMUST00000143370 Clic4 protein_coding Interval_11522 chr1 182432656 182433078 + 0 NA intron (ENSMUSG00000026510.10, intron 3 of 17) protein_coding-intron (ENSMUSG00000026510.10, intron 3 of 17) -9209 ENSMUSG00000026510.10 ENSMUSG00000026510 ENSMUST00000191626 Trp53bp2 protein_coding Interval_138347 chr6 87469872 87470502 + 0 NA intron (ENSMUSG00000030047.14, intron 6 of 10) protein_coding-intron (ENSMUSG00000030047.14, intron 5 of 9) -6540 ENSMUSG00000030047.14 ENSMUSG00000030047 ENSMUST00000203559 Arhgap25 protein_coding Interval_42629 chr13 17212062 17212289 + 0 NA intron (ENSMUSG00000055137.7, intron 12 of 13) protein_coding-intron (ENSMUSG00000055137.7, intron 12 of 13) 6154 ENSMUSG00000094754.1 ENSMUSG00000094754 ENSMUST00000178071 Gm25020 snRNA Interval_153385 chr7 144254484 144255177 + 0 NA intron (ENSMUSG00000037541.22, intron 1 of 12) protein_coding-intron (ENSMUSG00000037541.22, intron 4 of 15) 16105 ENSMUSG00000037541.22 ENSMUSG00000037541 ENSMUST00000136979 Shank2 protein_coding Interval_7448 chr1 131427397 131427739 + 0 NA intron (ENSMUSG00000026425.15, intron 3 of 4) protein_coding-intron (ENSMUSG00000026425.15, intron 3 of 22) -18355 ENSMUSG00000101778.1 ENSMUSG00000101778 ENSMUST00000191427 Gm29488 sense_intronic Interval_106423 chr3 96103923 96105315 + 0 NA promoter-TSS (ENSMUSG00000038495.14) protein_coding-promoter-TSS (ENSMUSG00000038495.14) 73 ENSMUSG00000038495.14 ENSMUSG00000038495 ENSMUST00000135263 Otud7b protein_coding Interval_84287 chr19 9863131 9864561 + 0 NA Intergenic Intergenic 5149 ENSMUSG00000118138.1 ENSMUSG00000118138 ENSMUST00000235839 Gm50322 lincRNA Interval_71626 chr17 24959955 24961176 + 0 NA promoter-TSS (ENSMUSG00000024165.9) protein_coding-promoter-TSS (ENSMUSG00000024165.9) 80 ENSMUSG00000024165.9 ENSMUSG00000024165 ENSMUST00000233481 Jpt2 protein_coding Interval_161859 chr8 123253598 123254999 + 0 NA promoter-TSS (ENSMUSG00000001062.18) protein_coding-promoter-TSS (ENSMUSG00000001062.18) -189 ENSMUSG00000001062.18 ENSMUSG00000001062 ENSMUST00000129591 Vps9d1 protein_coding Interval_89252 chr2 18459494 18461596 + 0 NA Intergenic Intergenic -107581 ENSMUSG00000081181.1 ENSMUSG00000081181 ENSMUST00000120891 Gm13353 processed_pseudogene Interval_44919 chr13 49748462 49748666 + 0 NA Intergenic Intergenic -1901 ENSMUSG00000118398.1 ENSMUSG00000118398 ENSMUST00000238441 Gm19334 processed_pseudogene Interval_170670 chr9 109985009 109986448 + 0 NA intron (ENSMUSG00000032479.15, intron 2 of 3) protein_coding-intron (ENSMUSG00000032479.15, intron 2 of 18) 6106 ENSMUSG00000105856.1 ENSMUSG00000105856 ENSMUST00000200260 Gm43732 antisense Interval_124397 chr5 45506796 45507081 + 0 NA intron (ENSMUSG00000039682.12, intron 9 of 12) protein_coding-intron (ENSMUSG00000039682.12, intron 9 of 12) -13291 ENSMUSG00000015804.14 ENSMUSG00000015804 ENSMUST00000139586 Med28 protein_coding Interval_137577 chr6 73499868 73500091 + 0 NA Intergenic Intergenic -28958 ENSMUSG00000107408.1 ENSMUSG00000107408 ENSMUST00000204961 1700065L07Rik lincRNA Interval_119714 chr4 139417195 139418249 + 0 NA TTS (ENSMUSG00000066036.14) protein_coding-TTS (ENSMUSG00000066036.14) 37063 ENSMUSG00000066036.14 ENSMUSG00000066036 ENSMUST00000135534 Ubr4 protein_coding Interval_33748 chr11 118256486 118256695 + 0 NA Intergenic Intergenic 33482 ENSMUSG00000033909.17 ENSMUSG00000033909 ENSMUST00000151433 Usp36 protein_coding Interval_76011 chr17 74338341 74339703 + 0 NA promoter-TSS (ENSMUSG00000024068.8) protein_coding-promoter-TSS (ENSMUSG00000024068.8) -15 ENSMUSG00000024068.8 ENSMUSG00000024068 ENSMUST00000233554 Spast protein_coding Interval_135232 chr6 37680280 37680491 + 0 NA Intergenic Intergenic 6810 ENSMUSG00000107035.1 ENSMUSG00000107035 ENSMUST00000201305 Ybx1-ps2 processed_pseudogene Interval_109832 chr3 148793242 148794216 + 0 NA Intergenic Intergenic 140669 ENSMUSG00000105934.1 ENSMUSG00000105934 ENSMUST00000196420 Gm43575 processed_pseudogene Interval_72701 chr17 31631982 31632516 + 0 NA intron (ENSMUSG00000024039.15, intron 1 of 1) protein_coding-intron (ENSMUSG00000024039.15, intron 2 of 16) 915 ENSMUSG00000024039.15 ENSMUSG00000024039 ENSMUST00000236909 Cbs protein_coding Interval_119199 chr4 136152998 136153351 + 0 NA Intergenic Intergenic 9310 ENSMUSG00000007872.3 ENSMUSG00000007872 ENSMUST00000133946 Id3 protein_coding Interval_94472 chr2 91457110 91459454 + 0 NA intron (ENSMUSG00000027253.15, intron 1 of 11) protein_coding-intron (ENSMUSG00000027253.15, intron 1 of 37) -13639 ENSMUSG00000040591.18 ENSMUSG00000040591 ENSMUST00000141262 1110051M20Rik protein_coding Interval_141296 chr6 127011128 127011683 + 0 NA Intergenic Intergenic -4181 ENSMUSG00000000183.6 ENSMUSG00000000183 ENSMUST00000000187 Fgf6 protein_coding Interval_21235 chr10 127356945 127357129 + 0 NA exon (ENSMUSG00000025405.9, exon 2 of 2) protein_coding-exon (ENSMUSG00000025405.9, exon 2 of 2) -2626 ENSMUSG00000047492.5 ENSMUSG00000047492 ENSMUST00000059718 Inhbe protein_coding Interval_86340 chr19 38879297 38879568 + 0 NA intron (ENSMUSG00000048720.8, intron 2 of 10) protein_coding-intron (ENSMUSG00000048720.8, intron 2 of 12) -5810 ENSMUSG00000089545.1 ENSMUSG00000089545 ENSMUST00000158920 Gm25838 misc_RNA Interval_24520 chr11 33958517 33960262 + 0 NA intron (ENSMUSG00000053519.17, intron 1 of 7) protein_coding-intron (ENSMUSG00000053519.17, intron 1 of 3) -3624 ENSMUSG00000020155.2 ENSMUSG00000020155 ENSMUST00000020362 Kcnmb1 protein_coding Interval_17176 chr10 74108038 74108614 + 0 NA intron (ENSMUSG00000052613.16, intron 2 of 34) protein_coding-intron (ENSMUSG00000052613.16, intron 3 of 30) 161270 ENSMUSG00000052613.16 ENSMUSG00000052613 ENSMUST00000192370 Pcdh15 protein_coding Interval_104389 chr3 65108612 65109968 + 0 NA promoter-TSS (ENSMUSG00000027827.17) protein_coding-promoter-TSS (ENSMUSG00000027827.17) 131872 ENSMUSG00000027827.17 ENSMUSG00000027827 ENSMUST00000161956 Kcnab1 protein_coding Interval_89419 chr2 20576138 20576390 + 0 NA intron (ENSMUSG00000036617.17, intron 1 of 2) protein_coding-intron (ENSMUSG00000036617.17, intron 3 of 18) 16460 ENSMUSG00000098575.1 ENSMUSG00000098575 ENSMUST00000183963 Gm27446 misc_RNA Interval_118134 chr4 129136355 129137902 + 0 NA TTS (ENSMUSG00000087416.1) lincRNA-TTS (ENSMUSG00000087416.1) 129 ENSMUSG00000001334.9 ENSMUSG00000001334 ENSMUST00000102600 Fndc5 protein_coding Interval_43930 chr13 38123480 38124438 + 0 NA Intergenic Intergenic 27833 ENSMUSG00000103789.1 ENSMUSG00000103789 ENSMUST00000191991 Gm10129 TEC Interval_60827 chr15 77003800 77004339 + 0 NA Intergenic Intergenic -10024 ENSMUSG00000116272.1 ENSMUSG00000116272 ENSMUST00000230714 Gm49540 antisense Interval_113731 chr4 57889395 57889965 + 0 NA intron (ENSMUSG00000089945.13, intron 8 of 8) protein_coding-intron (ENSMUSG00000038729.24, intron 3 of 3) -12185 ENSMUSG00000096195.1 ENSMUSG00000096195 ENSMUST00000179236 Gm26138 snRNA Interval_6696 chr1 118852093 118852446 + 0 NA intron (ENSMUSG00000048402.14, intron 5 of 5) protein_coding-intron (ENSMUSG00000048402.14, intron 8 of 13) 42133 ENSMUSG00000100040.1 ENSMUSG00000100040 ENSMUST00000190981 Gm28467 processed_pseudogene Interval_45821 chr13 58313618 58314283 + 0 NA promoter-TSS (ENSMUSG00000098258.1) miRNA-promoter-TSS (ENSMUSG00000098258.1) -689 ENSMUSG00000060176.4 ENSMUSG00000060176 ENSMUST00000225680 Kif27 protein_coding Interval_38893 chr12 83652524 83652744 + 0 NA TTS (ENSMUSG00000010608.15) protein_coding-TTS (ENSMUSG00000010608.15) -10342 ENSMUSG00000010608.15 ENSMUSG00000010608 ENSMUST00000183181 Rbm25 protein_coding Interval_38692 chr12 81080905 81081155 + 0 NA intron (ENSMUSG00000021136.13, intron 1 of 11) protein_coding-intron (ENSMUSG00000021136.13, intron 1 of 12) 54202 ENSMUSG00000021136.13 ENSMUSG00000021136 ENSMUST00000129362 Smoc1 protein_coding Interval_41959 chr13 5583744 5584547 + 0 NA intron (ENSMUSG00000114053.1, intron 2 of 2) lincRNA-intron (ENSMUSG00000114053.1, intron 2 of 2) -13017 ENSMUSG00000114053.1 ENSMUSG00000114053 ENSMUST00000223254 Gm35330 lincRNA Interval_127945 chr5 109698414 109698756 + 0 NA Intergenic Intergenic -7544 ENSMUSG00000072763.2 ENSMUSG00000072763 ENSMUST00000092720 5430403G16Rik protein_coding Interval_96895 chr2 129262231 129262955 + 0 NA intron (ENSMUSG00000085485.1, intron 2 of 2) antisense-intron (ENSMUSG00000085485.1, intron 2 of 2) 16217 ENSMUSG00000085485.1 ENSMUSG00000085485 ENSMUST00000141964 Gm14024 antisense Interval_173109 chrX 71961915 71963505 + 0 NA promoter-TSS (ENSMUSG00000033361.13) protein_coding-promoter-TSS (ENSMUSG00000033361.13) 85 ENSMUSG00000033361.13 ENSMUSG00000033361 ENSMUST00000048790 Prrg3 protein_coding Interval_100112 chr2 167138756 167140056 + 0 NA intron (ENSMUSG00000050556.9, intron 1 of 1) protein_coding-intron (ENSMUSG00000050556.9, intron 2 of 2) 45847 ENSMUSG00000083436.1 ENSMUSG00000083436 ENSMUST00000121824 Gm11471 processed_pseudogene Interval_155041 chr8 25901129 25901755 + 0 NA intron (ENSMUSG00000031576.16, intron 18 of 26) protein_coding-intron (ENSMUSG00000031576.16, intron 18 of 26) 39006 ENSMUSG00000031576.16 ENSMUSG00000031576 ENSMUST00000126226 Kcnu1 protein_coding Interval_114821 chr4 85831324 85831941 + 0 NA intron (ENSMUSG00000066113.16, intron 2 of 3) protein_coding-intron (ENSMUSG00000066113.16, intron 2 of 3) -78279 ENSMUSG00000088122.2 ENSMUSG00000088122 ENSMUST00000157497 Gm26069 misc_RNA Interval_55412 chr14 86903523 86904204 + 0 NA intron (ENSMUSG00000022021.14, intron 20 of 26) protein_coding-intron (ENSMUSG00000022021.14, intron 20 of 27) 16848 ENSMUSG00000077948.2 ENSMUSG00000077948 ENSMUST00000104755 Gm23438 miRNA Interval_114377 chr4 74406590 74407098 + 0 NA TTS (ENSMUSG00000028397.13) protein_coding-TTS (ENSMUSG00000028397.13) 144035 ENSMUSG00000028397.13 ENSMUSG00000028397 ENSMUST00000150439 Kdm4c protein_coding Interval_68628 chr16 81837202 81837474 + 0 NA Intergenic Intergenic 15855 ENSMUSG00000116954.1 ENSMUSG00000116954 ENSMUST00000231902 Gm5676 processed_pseudogene Interval_44599 chr13 46621247 46622246 + 0 NA intron (ENSMUSG00000021373.16, intron 6 of 11) protein_coding-intron (ENSMUSG00000021373.16, intron 7 of 12) -1966 ENSMUSG00000114596.1 ENSMUSG00000114596 ENSMUST00000225040 Gm47523 antisense Interval_4855 chr1 80261428 80262695 + 0 NA Intergenic Intergenic -5864 ENSMUSG00000103404.1 ENSMUSG00000103404 ENSMUST00000192258 Gm37932 TEC Interval_23856 chr11 27175642 27176322 + 0 NA Intergenic Intergenic -88847 ENSMUSG00000088654.1 ENSMUSG00000088654 ENSMUST00000158029 Gm24850 snoRNA Interval_173024 chrX 64978806 64979659 + 0 NA Intergenic Intergenic 35103 ENSMUSG00000081514.2 ENSMUSG00000081514 ENSMUST00000121973 Gm14673 processed_pseudogene Interval_2098 chr1 36417189 36418160 + 0 NA intron (ENSMUSG00000037432.15, intron 43 of 52) protein_coding-intron (ENSMUSG00000037432.15, intron 2 of 11) 27583 ENSMUSG00000001143.13 ENSMUSG00000001143 ENSMUST00000193502 Lman2l protein_coding Interval_52411 chr14 45757307 45757950 + 0 NA intron (ENSMUSG00000085866.1, intron 1 of 3) lincRNA-intron (ENSMUSG00000085866.1, intron 1 of 3) 2939 ENSMUSG00000085866.1 ENSMUSG00000085866 ENSMUST00000131006 Gm15218 lincRNA Interval_69817 chr16 96931937 96933481 + 0 NA intron (ENSMUSG00000050272.10, intron 3 of 32) protein_coding-intron (ENSMUSG00000050272.10, intron 3 of 32) 13977 ENSMUSG00000117324.1 ENSMUSG00000117324 ENSMUST00000232718 Gm32432 antisense Interval_143048 chr6 148912002 148912485 + 0 NA Intergenic Intergenic 8292 ENSMUSG00000108258.1 ENSMUSG00000108258 ENSMUST00000203924 Gm43913 lincRNA Interval_91131 chr2 35336389 35337389 + 0 NA promoter-TSS (ENSMUSG00000026880.11) protein_coding-promoter-TSS (ENSMUSG00000026880.11) -3520 ENSMUSG00000075391.6 ENSMUSG00000075391 ENSMUST00000120770 Glo1-ps processed_pseudogene Interval_78614 chr18 15261085 15261776 + 0 NA Intergenic Intergenic 51269 ENSMUSG00000117380.1 ENSMUSG00000117380 ENSMUST00000234159 E430002N23Rik lincRNA Interval_99740 chr2 164600207 164600415 + 0 NA intron (ENSMUSG00000070533.11, intron 5 of 6) protein_coding-intron (ENSMUSG00000070533.11, intron 5 of 7) -1625 ENSMUSG00000065797.1 ENSMUSG00000065797 ENSMUST00000083863 Gm25512 snRNA Interval_61398 chr15 81344464 81344730 + 0 NA promoter-TSS (ENSMUSG00000022404.8) protein_coding-promoter-TSS (ENSMUSG00000022404.8) 16180 ENSMUSG00000022404.8 ENSMUSG00000022404 ENSMUST00000231078 Slc25a17 protein_coding Interval_165754 chr9 52185121 52185424 + 0 NA Intergenic Intergenic -16700 ENSMUSG00000035164.8 ENSMUSG00000035164 ENSMUST00000165519 Zc3h12c protein_coding Interval_128204 chr5 111694716 111695791 + 0 NA Intergenic Intergenic -38671 ENSMUSG00000096949.1 ENSMUSG00000096949 ENSMUST00000180627 Gm26897 protein_coding Interval_24624 chr11 35367411 35367599 + 0 NA intron (ENSMUSG00000056427.10, intron 2 of 3) protein_coding-intron (ENSMUSG00000056427.10, intron 4 of 35) 17436 ENSMUSG00000086311.1 ENSMUSG00000086311 ENSMUST00000124503 Gm12122 sense_intronic Interval_122938 chr5 27652104 27652702 + 0 NA intron (ENSMUSG00000061576.15, intron 7 of 12) protein_coding-intron (ENSMUSG00000061576.15, intron 11 of 25) -98528 ENSMUSG00000086505.1 ENSMUSG00000086505 ENSMUST00000124392 Gm16058 antisense Interval_105346 chr3 85238698 85239075 + 0 NA intron (ENSMUSG00000102805.5, intron 3 of 9) protein_coding-intron (ENSMUSG00000102805.5, intron 3 of 9) -42439 ENSMUSG00000102703.1 ENSMUSG00000102703 ENSMUST00000191953 Gm38313 TEC Interval_93015 chr2 69601589 69602767 + 0 NA Intergenic Intergenic -45052 ENSMUSG00000063145.10 ENSMUSG00000063145 ENSMUST00000127806 Bbs5 protein_coding Interval_42192 chr13 9732163 9733003 + 0 NA intron (ENSMUSG00000021156.17, intron 2 of 11) protein_coding-intron (ENSMUSG00000021156.17, intron 2 of 13) -1314 ENSMUSG00000113885.1 ENSMUSG00000113885 ENSMUST00000221766 Gm47802 antisense Interval_127143 chr5 100586074 100586401 + 0 NA Intergenic Intergenic 6519 ENSMUSG00000104993.1 ENSMUSG00000104993 ENSMUST00000197922 Gm43510 processed_pseudogene Interval_86825 chr19 44143625 44145540 + 0 NA intron (ENSMUSG00000057506.5, intron 1 of 3) protein_coding-intron (ENSMUSG00000057506.5, intron 2 of 4) 1817 ENSMUSG00000057506.5 ENSMUSG00000057506 ENSMUST00000236380 Bloc1s2 protein_coding Interval_52131 chr14 36948089 36948840 + 0 NA intron (ENSMUSG00000058690.14, intron 1 of 10) protein_coding-intron (ENSMUSG00000058690.14, intron 1 of 9) -39283 ENSMUSG00000058690.14 ENSMUSG00000058690 ENSMUST00000182635 Ccser2 protein_coding Interval_68160 chr16 66023152 66023609 + 0 NA Intergenic Intergenic 62155 ENSMUSG00000088181.1 ENSMUSG00000088181 ENSMUST00000157556 Gm22217 misc_RNA Interval_22088 chr11 6274058 6275648 + 0 NA promoter-TSS (ENSMUSG00000004394.12) protein_coding-promoter-TSS (ENSMUSG00000004394.12) 12 ENSMUSG00000004394.12 ENSMUSG00000004394 ENSMUST00000132147 Tmed4 protein_coding Interval_27575 chr11 68807706 68808111 + 0 NA intron (ENSMUSG00000020900.15, intron 34 of 40) protein_coding-intron (ENSMUSG00000020900.15, intron 36 of 42) 52088 ENSMUSG00000018736.14 ENSMUSG00000018736 ENSMUST00000127469 Ndel1 protein_coding Interval_62739 chr15 96566484 96567507 + 0 NA Intergenic Intergenic 69093 ENSMUSG00000116160.1 ENSMUSG00000116160 ENSMUST00000229356 Gm41392 lincRNA Interval_138739 chr6 91544940 91545193 + 0 NA Intergenic Intergenic 22657 ENSMUSG00000108584.1 ENSMUSG00000108584 ENSMUST00000205547 Gm45216 sense_overlapping Interval_122429 chr5 22541533 22541826 + 0 NA intron (ENSMUSG00000029012.11, intron 3 of 9) protein_coding-intron (ENSMUSG00000029012.11, intron 3 of 13) -6836 ENSMUSG00000096346.1 ENSMUSG00000096346 ENSMUST00000178586 Gm22887 snRNA Interval_34776 chr12 11041143 11042718 + 0 NA Intergenic Intergenic -5883 ENSMUSG00000113620.1 ENSMUSG00000113620 ENSMUST00000222157 7420701I03Rik lincRNA Interval_26016 chr11 53493063 53493962 + 0 NA Intergenic Intergenic -7672 ENSMUSG00000085718.2 ENSMUSG00000085718 ENSMUST00000119147 Rpl9-ps3 processed_pseudogene Interval_88580 chr2 6352574 6352921 + 0 NA promoter-TSS (ENSMUSG00000039046.15) protein_coding-promoter-TSS (ENSMUSG00000039046.15) -29667 ENSMUSG00000118578.1 ENSMUSG00000118578 ENSMUST00000238876 AL845275.1 protein_coding Interval_3996 chr1 65793857 65794123 + 0 NA Intergenic Intergenic -132548 ENSMUSG00000025945.11 ENSMUSG00000025945 ENSMUST00000114027 Crygf protein_coding Interval_90962 chr2 33736829 33737301 + 0 NA intron (ENSMUSG00000038740.9, intron 9 of 9) protein_coding-intron (ENSMUSG00000038740.9, intron 9 of 9) -18166 ENSMUSG00000085463.1 ENSMUSG00000085463 ENSMUST00000130532 9430024E24Rik lincRNA Interval_162435 chr8 128700293 128700665 + 0 NA intron (ENSMUSG00000025809.15, intron 1 of 3) protein_coding-intron (ENSMUSG00000025809.15, intron 1 of 15) -23854 ENSMUSG00000025809.15 ENSMUSG00000025809 ENSMUST00000149116 Itgb1 protein_coding Interval_160105 chr8 106460921 106461224 + 0 NA Intergenic Intergenic -39433 ENSMUSG00000054069.8 ENSMUSG00000054069 ENSMUST00000066875 6030452D12Rik lincRNA Interval_169384 chr9 96832747 96834107 + 0 NA intron (ENSMUSG00000043587.15, intron 5 of 6) protein_coding-intron (ENSMUSG00000043587.15, intron 4 of 5) -19093 ENSMUSG00000100922.1 ENSMUSG00000100922 ENSMUST00000186517 Gm8520 processed_pseudogene Interval_5968 chr1 93603879 93604722 + 0 NA exon (ENSMUSG00000034066.13, exon 16 of 27) protein_coding-exon (ENSMUSG00000034066.13, exon 16 of 27) -30893 ENSMUSG00000100927.1 ENSMUSG00000100927 ENSMUST00000190971 Gm28536 antisense Interval_166924 chr9 63962216 63963006 + 0 NA intron (ENSMUSG00000036867.7, intron 3 of 3) protein_coding-intron (ENSMUSG00000036867.7, intron 3 of 3) -34862 ENSMUSG00000111058.1 ENSMUSG00000111058 ENSMUST00000214827 Gm36033 lincRNA Interval_150307 chr7 109507027 109508109 + 0 NA intron (ENSMUSG00000031026.15, intron 1 of 19) protein_coding-intron (ENSMUSG00000031026.15, intron 1 of 19) -11702 ENSMUSG00000046364.14 ENSMUSG00000046364 ENSMUST00000174303 Rpl27a protein_coding Interval_59600 chr15 55856663 55856972 + 0 NA intron (ENSMUSG00000060429.12, intron 1 of 1) protein_coding-intron (ENSMUSG00000060429.12, intron 1 of 6) 49493 ENSMUSG00000060429.12 ENSMUSG00000060429 ENSMUST00000140574 Sntb1 protein_coding Interval_99077 chr2 157030423 157031605 + 0 NA exon (ENSMUSG00000055485.6, exon 8 of 15) protein_coding-exon (ENSMUSG00000055485.6, exon 8 of 15) -3542 ENSMUSG00000055485.6 ENSMUSG00000055485 ENSMUST00000133571 Soga1 protein_coding Interval_18557 chr10 87561075 87561387 + 0 NA intron (ENSMUSG00000020051.17, intron 2 of 4) protein_coding-intron (ENSMUSG00000020051.17, intron 4 of 12) 39301 ENSMUSG00000020051.17 ENSMUSG00000020051 ENSMUST00000217864 Pah protein_coding Interval_5211 chr1 86466978 86467917 + 0 NA Intergenic Intergenic -6212 ENSMUSG00000101328.1 ENSMUSG00000101328 ENSMUST00000163337 Rpl30-ps6 processed_pseudogene Interval_71247 chr17 21566318 21567950 + 0 NA exon (ENSMUSG00000067931.6, exon 1 of 6) protein_coding-exon (ENSMUSG00000067931.6, exon 1 of 6) 126 ENSMUSG00000067931.6 ENSMUSG00000067931 ENSMUST00000088787 Zfp948 protein_coding Interval_166807 chr9 62868544 62869145 + 0 NA promoter-TSS (ENSMUSG00000074250.11) transcribed_processed_pseudogene-promoter-TSS (ENSMUSG00000074250.11) -844 ENSMUSG00000074250.11 ENSMUSG00000074250 ENSMUST00000139570 Gm10653 transcribed_processed_pseudogene Interval_97768 chr2 143940199 143941318 + 0 NA intron (ENSMUSG00000015932.8, intron 3 of 3) protein_coding-intron (ENSMUSG00000015932.8, intron 3 of 3) 16887 ENSMUSG00000027422.15 ENSMUSG00000027422 ENSMUST00000037875 Rrbp1 protein_coding Interval_70774 chr17 14371906 14372751 + 0 NA intron (ENSMUSG00000023886.10, intron 8 of 12) protein_coding-intron (ENSMUSG00000023886.10, intron 8 of 12) 26614 ENSMUSG00000117328.1 ENSMUSG00000117328 ENSMUST00000233310 4930474M22Rik antisense Interval_44136 chr13 41134876 41135524 + 0 NA exon (ENSMUSG00000038651.15, exon 9 of 29) protein_coding-exon (ENSMUSG00000038651.15, exon 9 of 29) -18188 ENSMUSG00000038651.15 ENSMUSG00000038651 ENSMUST00000145810 Sycp2l protein_coding Interval_14444 chr10 33820778 33822010 + 0 NA Intergenic Intergenic -11896 ENSMUSG00000071343.2 ENSMUSG00000071343 ENSMUST00000105222 Gm10327 processed_pseudogene Interval_67084 chr16 42769779 42771155 + 0 NA intron (ENSMUSG00000075070.6, intron 1 of 3) lincRNA-intron (ENSMUSG00000075070.6, intron 1 of 3) 105273 ENSMUSG00000075070.6 ENSMUSG00000075070 ENSMUST00000130331 4932412D23Rik lincRNA Interval_55504 chr14 89451015 89451424 + 0 NA Intergenic Intergenic 58143 ENSMUSG00000088405.1 ENSMUSG00000088405 ENSMUST00000157780 Gm25886 snRNA Interval_106223 chr3 94757126 94757701 + 0 NA intron (ENSMUSG00000081355.1, intron 1 of 5) unprocessed_pseudogene-intron (ENSMUSG00000081355.1, intron 1 of 5) 703 ENSMUSG00000081355.1 ENSMUSG00000081355 ENSMUST00000118050 Gm15264 unprocessed_pseudogene Interval_9647 chr1 160721027 160721866 + 0 NA intron (ENSMUSG00000026721.16, intron 8 of 12) protein_coding-intron (ENSMUSG00000026721.16, intron 7 of 20) 5235 ENSMUSG00000103200.1 ENSMUSG00000103200 ENSMUST00000193191 Gm37328 sense_intronic Interval_61320 chr15 80828750 80830237 + 0 NA intron (ENSMUSG00000047888.10, intron 1 of 17) protein_coding-intron (ENSMUSG00000047888.10, intron 4 of 24) -93571 ENSMUSG00000047888.10 ENSMUSG00000047888 ENSMUST00000228525 Tnrc6b protein_coding Interval_7480 chr1 131728120 131728369 + 0 NA Intergenic Intergenic -15794 ENSMUSG00000042268.10 ENSMUSG00000042268 ENSMUST00000147800 Slc26a9 protein_coding Interval_122496 chr5 23442225 23442547 + 0 NA intron (ENSMUSG00000029004.15, intron 1 of 12) protein_coding-intron (ENSMUSG00000029004.15, intron 1 of 25) -9077 ENSMUSG00000073147.3 ENSMUSG00000073147 ENSMUST00000189045 5031425E22Rik lincRNA Interval_2443 chr1 39390930 39392809 + 0 NA intron (ENSMUSG00000003134.10, intron 1 of 1) protein_coding-intron (ENSMUSG00000003134.10, intron 7 of 19) 762 ENSMUSG00000003134.10 ENSMUSG00000003134 ENSMUST00000195854 Tbc1d8 protein_coding Interval_4199 chr1 71583162 71583814 + 0 NA Intergenic Intergenic 26309 ENSMUSG00000026192.13 ENSMUSG00000026192 ENSMUST00000154855 Atic protein_coding Interval_168105 chr9 76565861 76567597 + 0 NA intron (ENSMUSG00000032358.12, intron 1 of 4) protein_coding-intron (ENSMUSG00000032358.12, intron 1 of 4) 387 ENSMUSG00000032358.12 ENSMUSG00000032358 ENSMUST00000098546 Fam83b protein_coding Interval_63124 chr15 99221344 99221654 + 0 NA Intergenic Intergenic -16406 ENSMUSG00000037579.7 ENSMUSG00000037579 ENSMUST00000230552 Kcnh3 protein_coding Interval_31299 chr11 99437885 99439099 + 0 NA promoter-TSS (ENSMUSG00000035775.2) protein_coding-promoter-TSS (ENSMUSG00000035775.2) -342 ENSMUSG00000035775.2 ENSMUSG00000035775 ENSMUST00000017743 Krt20 protein_coding Interval_105133 chr3 82297597 82297805 + 0 NA Intergenic Intergenic -82372 ENSMUSG00000033900.13 ENSMUSG00000033900 ENSMUST00000195793 Map9 protein_coding Interval_74764 chr17 56393530 56393907 + 0 NA promoter-TSS (ENSMUSG00000024201.12) protein_coding-promoter-TSS (ENSMUSG00000024201.12) 201 ENSMUSG00000024201.12 ENSMUSG00000024201 ENSMUST00000141507 Kdm4b protein_coding Interval_41098 chr12 111162322 111162742 + 0 NA intron (ENSMUSG00000083193.1, intron 2 of 3) protein_coding-intron (ENSMUSG00000083193.1, intron 2 of 3) 21959 ENSMUSG00000083193.1 ENSMUSG00000083193 ENSMUST00000121608 4930595D18Rik protein_coding Interval_32906 chr11 112998646 112999525 + 0 NA Intergenic Intergenic 173906 ENSMUSG00000020624.3 ENSMUSG00000020624 ENSMUST00000153429 4933434M16Rik lincRNA Interval_57497 chr15 11843324 11843893 + 0 NA TTS (ENSMUSG00000022206.7) protein_coding-TTS (ENSMUSG00000022206.7) 62066 ENSMUSG00000022206.7 ENSMUSG00000022206 ENSMUST00000226878 Npr3 protein_coding Interval_26510 chr11 58248251 58248554 + 0 NA Intergenic Intergenic -16952 ENSMUSG00000118428.1 ENSMUSG00000118428 ENSMUST00000238359 Gm5038 unitary_pseudogene Interval_168633 chr9 84541725 84541942 + 0 NA Intergenic Intergenic -36127 ENSMUSG00000111245.1 ENSMUSG00000111245 ENSMUST00000214502 Gm39388 lincRNA Interval_148422 chr7 81155136 81155328 + 0 NA intron (ENSMUSG00000025726.11, intron 11 of 17) protein_coding-intron (ENSMUSG00000025726.11, intron 11 of 17) 6512 ENSMUSG00000083820.1 ENSMUSG00000083820 ENSMUST00000118488 Ndufs6b processed_pseudogene Interval_155033 chr8 25834372 25834931 + 0 NA intron (ENSMUSG00000031575.18, intron 4 of 14) protein_coding-intron (ENSMUSG00000031575.18, intron 5 of 15) -1106 ENSMUSG00000031575.18 ENSMUSG00000031575 ENSMUST00000211188 Ash2l protein_coding Interval_150765 chr7 114198257 114198530 + 0 NA Intergenic Intergenic 10695 ENSMUSG00000110407.1 ENSMUSG00000110407 ENSMUST00000211484 Gm45454 processed_pseudogene Interval_156332 chr8 47487216 47488160 + 0 NA Intergenic Intergenic 40342 ENSMUSG00000038102.15 ENSMUSG00000038102 ENSMUST00000131551 Trappc11 protein_coding Interval_125661 chr5 73124614 73124872 + 0 NA exon (ENSMUSG00000070733.13, exon 6 of 60) protein_coding-exon (ENSMUSG00000070733.13, exon 6 of 60) -32271 ENSMUSG00000086376.2 ENSMUSG00000086376 ENSMUST00000146728 1700071G01Rik antisense Interval_31250 chr11 99122867 99123180 + 0 NA Intergenic Intergenic 32054 ENSMUSG00000037944.8 ENSMUSG00000037944 ENSMUST00000103134 Ccr7 protein_coding Interval_161688 chr8 122065067 122065440 + 0 NA intron (ENSMUSG00000092329.1, intron 1 of 15) protein_coding-intron (ENSMUSG00000092329.1, intron 1 of 15) 87229 ENSMUSG00000099140.1 ENSMUSG00000099140 ENSMUST00000184699 Mir7237 miRNA Interval_26215 chr11 55158734 55159485 + 0 NA exon (ENSMUSG00000020264.5, exon 10 of 10) protein_coding-exon (ENSMUSG00000020264.5, exon 10 of 10) -7423 ENSMUSG00000049491.15 ENSMUSG00000049491 ENSMUST00000069816 Slc36a3 protein_coding Interval_164553 chr9 38551167 38552374 + 0 NA Intergenic Intergenic 13921 ENSMUSG00000060114.4 ENSMUSG00000060114 ENSMUST00000215122 Olfr910 protein_coding Interval_65962 chr16 30561166 30561436 + 0 NA TTS (ENSMUSG00000022538.20) protein_coding-TTS (ENSMUSG00000022538.20) 13942 ENSMUSG00000022538.20 ENSMUSG00000022538 ENSMUST00000129004 Lsg1 protein_coding Interval_107936 chr3 116999242 116999531 + 0 NA exon (ENSMUSG00000105221.1, exon 1 of 1) processed_pseudogene-exon (ENSMUSG00000105221.1, exon 1 of 1) 200 ENSMUSG00000105221.1 ENSMUSG00000105221 ENSMUST00000198431 Gm9332 processed_pseudogene Interval_154664 chr8 22453380 22454463 + 0 NA Intergenic Intergenic 22934 ENSMUSG00000031534.15 ENSMUSG00000031534 ENSMUST00000033935 Smim19 protein_coding Interval_145224 chr7 30776959 30777605 + 0 NA intron (ENSMUSG00000060962.12, intron 1 of 6) protein_coding-intron (ENSMUSG00000060962.12, intron 1 of 6) -10623 ENSMUSG00000074199.7 ENSMUSG00000074199 ENSMUST00000188036 Krtdap protein_coding Interval_58419 chr15 34369689 34370166 + 0 NA intron (ENSMUSG00000022324.15, intron 4 of 13) protein_coding-intron (ENSMUSG00000022324.15, intron 4 of 18) -12055 ENSMUSG00000094447.2 ENSMUSG00000094447 ENSMUST00000179647 9430069I07Rik protein_coding Interval_137431 chr6 72234165 72235792 + 0 NA promoter-TSS (ENSMUSG00000037621.8) protein_coding-promoter-TSS (ENSMUSG00000037621.8) 252 ENSMUSG00000037621.8 ENSMUSG00000037621 ENSMUST00000206553 Atoh8 protein_coding Interval_42658 chr13 17755140 17755944 + 0 NA exon (ENSMUSG00000113140.1, exon 1 of 1) TEC-exon (ENSMUSG00000113140.1, exon 1 of 1) 1783 ENSMUSG00000113140.1 ENSMUSG00000113140 ENSMUST00000220696 Gm48624 TEC Interval_35813 chr12 30187295 30187762 + 0 NA intron (ENSMUSG00000020672.14, intron 15 of 15) protein_coding-intron (ENSMUSG00000020672.14, intron 16 of 16) -55629 ENSMUSG00000020673.14 ENSMUSG00000020673 ENSMUST00000155263 Tpo protein_coding Interval_149223 chr7 96409222 96409446 + 0 NA intron (ENSMUSG00000048078.16, intron 2 of 2) protein_coding-intron (ENSMUSG00000048078.16, intron 2 of 32) 26683 ENSMUSG00000082780.2 ENSMUSG00000082780 ENSMUST00000117302 Rps11-ps5 processed_pseudogene Interval_129378 chr5 119625652 119627151 + 0 NA intron (ENSMUSG00000085708.1, intron 1 of 3) antisense-intron (ENSMUSG00000087516.7, intron 2 of 2) 459 ENSMUSG00000085708.1 ENSMUSG00000085708 ENSMUST00000156235 Gm16063 lincRNA Interval_151084 chr7 118436134 118436735 + 0 NA TTS (ENSMUSG00000058420.8) protein_coding-TTS (ENSMUSG00000058420.8) 11622 ENSMUSG00000058420.8 ENSMUSG00000058420 ENSMUST00000207650 Syt17 protein_coding Interval_58245 chr15 31323642 31323939 + 0 NA TTS (ENSMUSG00000022237.17) protein_coding-TTS (ENSMUSG00000022237.17) -15596 ENSMUSG00000022237.17 ENSMUSG00000022237 ENSMUST00000227391 Ankrd33b protein_coding Interval_121811 chr5 8430851 8431039 + 0 NA TTS (ENSMUSG00000054099.11) protein_coding-TTS (ENSMUSG00000054099.11) 8087 ENSMUSG00000054099.11 ENSMUSG00000054099 ENSMUST00000198119 Slc25a40 protein_coding Interval_33430 chr11 116500556 116501688 + 0 NA Intergenic Intergenic -3414 ENSMUSG00000081318.1 ENSMUSG00000081318 ENSMUST00000119508 Rpl36-ps1 processed_pseudogene Interval_110288 chr3 155937589 155938180 + 0 NA Intergenic Intergenic 33375 ENSMUSG00000104377.1 ENSMUSG00000104377 ENSMUST00000193321 Gm37515 processed_pseudogene Interval_79490 chr18 32292736 32293741 + 0 NA promoter-TSS (ENSMUSG00000089529.1) misc_RNA-promoter-TSS (ENSMUSG00000089529.1) -112 ENSMUSG00000089529.1 ENSMUSG00000089529 ENSMUST00000158904 Gm22325 misc_RNA Interval_163796 chr9 26049055 26049272 + 0 NA Intergenic Intergenic -15684 ENSMUSG00000111240.1 ENSMUSG00000111240 ENSMUST00000213586 Gm39312 lincRNA Interval_130508 chr5 128474934 128475879 + 0 NA Intergenic Intergenic 26502 ENSMUSG00000104727.1 ENSMUSG00000104727 ENSMUST00000199898 Gm42500 lincRNA Interval_35950 chr12 32621859 32622151 + 0 NA Intergenic Intergenic 51289 ENSMUSG00000112617.1 ENSMUSG00000112617 ENSMUST00000220414 Gm47937 processed_pseudogene Interval_10056 chr1 165433709 165434510 + 0 NA intron (ENSMUSG00000026571.12, intron 1 of 11) protein_coding-intron (ENSMUSG00000026571.12, intron 1 of 18) -6516 ENSMUSG00000089299.1 ENSMUSG00000089299 ENSMUST00000158674 Gm24637 snoRNA Interval_3485 chr1 58794661 58796357 + 0 NA promoter-TSS (ENSMUSG00000026029.14) protein_coding-promoter-TSS (ENSMUSG00000026029.14) 32 ENSMUSG00000026029.14 ENSMUSG00000026029 ENSMUST00000190213 Casp8 protein_coding Interval_57740 chr15 17933862 17934217 + 0 NA Intergenic Intergenic -1539 ENSMUSG00000088133.1 ENSMUSG00000088133 ENSMUST00000157508 Gm22895 misc_RNA Interval_23868 chr11 27334215 27334935 + 0 NA Intergenic Intergenic -15597 ENSMUSG00000088438.1 ENSMUSG00000088438 ENSMUST00000157813 Gm25387 snoRNA Interval_123776 chr5 35434202 35434439 + 0 NA Intergenic Intergenic 38222 ENSMUSG00000106970.1 ENSMUSG00000106970 ENSMUST00000201640 Gm43377 TEC Interval_12224 chr1 190944070 190944658 + 0 NA intron (ENSMUSG00000026634.16, intron 7 of 7) protein_coding-intron (ENSMUSG00000026634.16, intron 9 of 9) 7112 ENSMUSG00000026634.16 ENSMUSG00000026634 ENSMUST00000146048 Angel2 protein_coding Interval_408 chr1 4970292 4973105 + 0 NA exon (ENSMUSG00000085623.1, exon 2 of 3) antisense-exon (ENSMUSG00000085623.1, exon 2 of 3) 841 ENSMUSG00000085623.1 ENSMUSG00000085623 ENSMUST00000144339 Gm16041 antisense Interval_112951 chr4 46368985 46369303 + 0 NA Intergenic Intergenic 20274 ENSMUSG00000028331.12 ENSMUSG00000028331 ENSMUST00000030015 Trmo protein_coding Interval_126789 chr5 92941326 92943170 + 0 NA TTS (ENSMUSG00000029381.16) protein_coding-TTS (ENSMUSG00000029381.16) -61583 ENSMUSG00000106930.1 ENSMUSG00000106930 ENSMUST00000200896 Gm6450 processed_pseudogene Interval_68279 chr16 72217942 72218860 + 0 NA Intergenic Intergenic 15926 ENSMUSG00000116769.1 ENSMUSG00000116769 ENSMUST00000231977 8030451O07Rik lincRNA Interval_19671 chr10 107667824 107668012 + 0 NA intron (ENSMUSG00000035916.8, intron 14 of 20) protein_coding-intron (ENSMUSG00000035916.8, intron 14 of 44) 52109 ENSMUSG00000035916.8 ENSMUSG00000035916 ENSMUST00000218399 Ptprq protein_coding Interval_174617 chrX 160144560 160144997 + 0 NA Intergenic Intergenic -15813 ENSMUSG00000031299.10 ENSMUSG00000031299 ENSMUST00000127535 Pdha1 protein_coding Interval_157073 chr8 64962039 64963016 + 0 NA intron (ENSMUSG00000025521.15, intron 3 of 4) protein_coding-intron (ENSMUSG00000025521.15, intron 3 of 5) 2984 ENSMUSG00000025521.15 ENSMUSG00000025521 ENSMUST00000211405 Tmem192 protein_coding Interval_91357 chr2 38196408 38198536 + 0 NA intron (ENSMUSG00000035392.17, intron 2 of 5) protein_coding-intron (ENSMUSG00000035392.17, intron 2 of 21) 27650 ENSMUSG00000105046.1 ENSMUSG00000105046 ENSMUST00000200061 Gm44455 miRNA Interval_82904 chr18 78754915 78755599 + 0 NA exon (ENSMUSG00000024548.11, exon 6 of 6) protein_coding-exon (ENSMUSG00000024548.11, exon 6 of 6) 107129 ENSMUSG00000088733.1 ENSMUSG00000088733 ENSMUST00000158108 Gm23895 snRNA Interval_119213 chr4 136238273 136240024 + 0 NA intron (ENSMUSG00000036995.7, intron 16 of 24) protein_coding-intron (ENSMUSG00000036995.7, intron 16 of 24) -8825 ENSMUSG00000001604.14 ENSMUSG00000001604 ENSMUST00000143942 Tcea3 protein_coding Interval_41265 chr12 112264399 112264738 + 0 NA Intergenic Intergenic -59415 ENSMUSG00000113282.1 ENSMUSG00000113282 ENSMUST00000220716 Gm20368 processed_pseudogene Interval_69057 chr16 90355925 90356477 + 0 NA intron (ENSMUSG00000116849.1, intron 2 of 2) lincRNA-intron (ENSMUSG00000116989.1, intron 2 of 2) -6559 ENSMUSG00000116656.1 ENSMUSG00000116656 ENSMUST00000231405 Gm49708 processed_transcript Interval_141414 chr6 128102197 128102864 + 0 NA intron (ENSMUSG00000030352.15, intron 1 of 6) protein_coding-intron (ENSMUSG00000030352.15, intron 1 of 8) -7504 ENSMUSG00000076327.1 ENSMUSG00000076327 ENSMUST00000102372 Gm26338 miRNA Interval_15788 chr10 56651411 56651918 + 0 NA Intergenic Intergenic -4530 ENSMUSG00000045048.7 ENSMUSG00000045048 ENSMUST00000062156 Gm9795 processed_pseudogene Interval_113033 chr4 47097216 47097970 + 0 NA intron (ENSMUSG00000039774.12, intron 1 of 8) protein_coding-intron (ENSMUSG00000039774.12, intron 1 of 9) -3439 ENSMUSG00000094286.1 ENSMUSG00000094286 ENSMUST00000179673 Gm12424 processed_pseudogene Interval_1802 chr1 33875885 33876282 + 0 NA intron (ENSMUSG00000042182.16, intron 2 of 2) protein_coding-intron (ENSMUSG00000042182.16, intron 3 of 6) 7397 ENSMUSG00000042182.16 ENSMUSG00000042182 ENSMUST00000139700 Bend6 protein_coding Interval_2881 chr1 47338760 47339053 + 0 NA Intergenic Intergenic 27466 ENSMUSG00000081185.1 ENSMUSG00000081185 ENSMUST00000121202 Gm4852 processed_pseudogene Interval_135819 chr6 47550220 47550741 + 0 NA intron (ENSMUSG00000029687.16, intron 8 of 10) protein_coding-intron (ENSMUSG00000029687.16, intron 8 of 19) 30784 ENSMUSG00000029686.15 ENSMUSG00000029686 ENSMUST00000149531 Cul1 protein_coding Interval_28509 chr11 76406477 76407589 + 0 NA promoter-TSS (ENSMUSG00000020843.15) protein_coding-promoter-TSS (ENSMUSG00000020843.15) -172 ENSMUSG00000020843.15 ENSMUSG00000020843 ENSMUST00000164102 Timm22 protein_coding Interval_43904 chr13 37974953 37975238 + 0 NA exon (ENSMUSG00000021427.10, exon 8 of 8) protein_coding-exon (ENSMUSG00000021427.10, exon 8 of 8) 18988 ENSMUSG00000021427.10 ENSMUSG00000021427 ENSMUST00000224399 Ssr1 protein_coding Interval_97849 chr2 144416086 144418733 + 0 NA Intergenic Intergenic -46986 ENSMUSG00000083674.3 ENSMUSG00000083674 ENSMUST00000137929 Zfp133-ps transcribed_unitary_pseudogene Interval_126465 chr5 88711094 88712175 + 0 NA Intergenic Intergenic -9221 ENSMUSG00000006262.15 ENSMUSG00000006262 ENSMUST00000125171 Mob1b protein_coding Interval_56639 chr14 121058278 121058951 + 0 NA intron (ENSMUSG00000025555.14, intron 1 of 26) protein_coding-intron (ENSMUSG00000025555.14, intron 1 of 26) -43465 ENSMUSG00000025555.14 ENSMUSG00000025555 ENSMUST00000137971 Farp1 protein_coding Interval_78420 chr18 12701555 12702662 + 0 NA intron (ENSMUSG00000024424.15, intron 6 of 7) protein_coding-intron (ENSMUSG00000024424.15, intron 6 of 13) -12703 ENSMUSG00000087950.1 ENSMUSG00000087950 ENSMUST00000157325 Mir1948 miRNA Interval_95841 chr2 117180448 117180974 + 0 NA exon (ENSMUSG00000027351.14, exon 7 of 7) protein_coding-exon (ENSMUSG00000027351.14, exon 7 of 7) -4416 ENSMUSG00000076376.1 ENSMUSG00000076376 ENSMUST00000102421 Mir674 miRNA Interval_119231 chr4 136339685 136340114 + 0 NA TTS (ENSMUSG00000066037.14) protein_coding-TTS (ENSMUSG00000066037.14) 880 ENSMUSG00000066037.14 ENSMUSG00000066037 ENSMUST00000180855 Hnrnpr protein_coding Interval_125568 chr5 71657360 71658692 + 0 NA promoter-TSS (ENSMUSG00000029211.11) protein_coding-promoter-TSS (ENSMUSG00000029211.11) -45 ENSMUSG00000029211.11 ENSMUSG00000029211 ENSMUST00000199150 Gabra4 protein_coding Interval_140278 chr6 116002567 116002756 + 0 NA Intergenic Intergenic -45823 ENSMUSG00000030123.15 ENSMUSG00000030123 ENSMUST00000131590 Plxnd1 protein_coding Interval_131349 chr5 136646483 136646913 + 0 NA Intergenic Intergenic -51081 ENSMUSG00000005474.9 ENSMUSG00000005474 ENSMUST00000197849 Myl10 protein_coding Interval_144572 chr7 26200995 26201778 + 0 NA intron (ENSMUSG00000040660.6, intron 8 of 8) protein_coding-intron (ENSMUSG00000040660.6, intron 8 of 8) 27975 ENSMUSG00000040660.6 ENSMUSG00000040660 ENSMUST00000082214 Cyp2b9 protein_coding Interval_138628 chr6 90538061 90538369 + 0 NA intron (ENSMUSG00000030088.15, intron 1 of 2) protein_coding-intron (ENSMUSG00000030088.15, intron 1 of 2) -12633 ENSMUSG00000030088.15 ENSMUSG00000030088 ENSMUST00000137669 Aldh1l1 protein_coding Interval_2727 chr1 43941542 43942823 + 0 NA intron (ENSMUSG00000041763.14, intron 2 of 5) protein_coding-intron (ENSMUSG00000041763.14, intron 2 of 29) 8168 ENSMUSG00000041763.14 ENSMUSG00000041763 ENSMUST00000187115 Tpp2 protein_coding Interval_80522 chr18 43307774 43308224 + 0 NA intron (ENSMUSG00000039954.9, intron 7 of 11) protein_coding-intron (ENSMUSG00000039954.9, intron 8 of 12) 65224 ENSMUSG00000024501.20 ENSMUSG00000024501 ENSMUST00000118071 Dpysl3 protein_coding Interval_133419 chr6 4925809 4926576 + 0 NA intron (ENSMUSG00000032827.15, intron 1 of 17) protein_coding-intron (ENSMUSG00000032827.15, intron 2 of 15) -15955 ENSMUSG00000097385.1 ENSMUSG00000097385 ENSMUST00000181178 Gm26814 TEC Interval_10174 chr1 166378564 166380131 + 0 NA promoter-TSS (ENSMUSG00000026563.13) protein_coding-promoter-TSS (ENSMUSG00000026563.13) 23 ENSMUSG00000026563.13 ENSMUSG00000026563 ENSMUST00000132817 Tada1 protein_coding Interval_102533 chr3 27545777 27546389 + 0 NA promoter-TSS (ENSMUSG00000106625.1) TEC-promoter-TSS (ENSMUSG00000106625.1) -558 ENSMUSG00000106625.1 ENSMUSG00000106625 ENSMUST00000198723 Gm43344 TEC Interval_6354 chr1 106204045 106205046 + 0 NA intron (ENSMUSG00000044340.7, intron 1 of 16) protein_coding-intron (ENSMUSG00000044340.7, intron 1 of 16) -14769 ENSMUSG00000103291.1 ENSMUSG00000103291 ENSMUST00000194600 Gm38235 TEC Interval_121953 chr5 12382513 12384554 + 0 NA promoter-TSS (ENSMUSG00000040254.11) protein_coding-promoter-TSS (ENSMUSG00000040254.11) 27 ENSMUSG00000040254.11 ENSMUSG00000040254 ENSMUST00000195923 Sema3d protein_coding Interval_35926 chr12 32060503 32061854 + 0 NA promoter-TSS (ENSMUSG00000002997.15) protein_coding-promoter-TSS (ENSMUSG00000002997.15) -589 ENSMUSG00000002997.15 ENSMUSG00000002997 ENSMUST00000146865 Prkar2b protein_coding Interval_87703 chr19 55225138 55225497 + 0 NA intron (ENSMUSG00000055523.7, intron 9 of 20) protein_coding-intron (ENSMUSG00000055523.7, intron 9 of 20) 15919 ENSMUSG00000055523.7 ENSMUSG00000055523 ENSMUST00000069183 Gucy2g protein_coding Interval_148377 chr7 80873409 80873829 + 0 NA intron (ENSMUSG00000038797.13, intron 1 of 1) protein_coding-intron (ENSMUSG00000038797.13, intron 2 of 2) 12668 ENSMUSG00000038797.13 ENSMUSG00000038797 ENSMUST00000155128 Zscan2 protein_coding Interval_148806 chr7 88248589 88249529 + 0 NA Intergenic Intergenic -47793 ENSMUSG00000030560.17 ENSMUSG00000030560 ENSMUST00000152834 Ctsc protein_coding Interval_116454 chr4 112787458 112788199 + 0 NA Intergenic Intergenic -13001 ENSMUSG00000048766.6 ENSMUSG00000048766 ENSMUST00000137128 Skint10 protein_coding Interval_28579 chr11 76932895 76933635 + 0 NA intron (ENSMUSG00000020840.10, intron 2 of 4) protein_coding-intron (ENSMUSG00000020840.10, intron 2 of 4) -12586 ENSMUSG00000020840.10 ENSMUSG00000020840 ENSMUST00000145732 Blmh protein_coding Interval_90946 chr2 33639350 33641584 + 0 NA promoter-TSS (ENSMUSG00000052951.5) antisense-promoter-TSS (ENSMUSG00000052951.5) 44 ENSMUSG00000038765.14 ENSMUSG00000038765 ENSMUST00000137559 Lmx1b protein_coding Interval_56741 chr14 121786395 121787396 + 0 NA intron (ENSMUSG00000025558.19, intron 1 of 52) protein_coding-intron (ENSMUSG00000025558.19, intron 1 of 52) -44119 ENSMUSG00000115443.1 ENSMUSG00000115443 ENSMUST00000228932 Gm9395 processed_pseudogene Interval_80793 chr18 47150983 47151633 + 0 NA intron (ENSMUSG00000042705.9, intron 6 of 6) protein_coding-intron (ENSMUSG00000042705.9, intron 6 of 6) -2906 ENSMUSG00000117350.1 ENSMUSG00000117350 ENSMUST00000234752 Gm49975 processed_transcript Interval_3986 chr1 65439276 65439484 + 0 NA promoter-TSS (ENSMUSG00000100340.1) processed_pseudogene-promoter-TSS (ENSMUSG00000100340.1) -395 ENSMUSG00000100340.1 ENSMUSG00000100340 ENSMUST00000187755 Gm28923 processed_pseudogene Interval_89821 chr2 25686940 25687210 + 0 NA TTS (ENSMUSG00000047356.2) protein_coding-TTS (ENSMUSG00000047356.2) 4349 ENSMUSG00000047356.2 ENSMUSG00000047356 ENSMUST00000058912 Lcn10 protein_coding Interval_34169 chr11 121047849 121048417 + 0 NA intron (ENSMUSG00000086835.2, intron 2 of 2) antisense-intron (ENSMUSG00000086835.2, intron 2 of 2) 8230 ENSMUSG00000039364.13 ENSMUSG00000039364 ENSMUST00000150577 Sectm1b protein_coding Interval_62733 chr15 96533141 96533479 + 0 NA Intergenic Intergenic 35408 ENSMUSG00000116160.1 ENSMUSG00000116160 ENSMUST00000229356 Gm41392 lincRNA Interval_117395 chr4 123434528 123434827 + 0 NA promoter-TSS (ENSMUSG00000081528.1) processed_pseudogene-promoter-TSS (ENSMUSG00000081528.1) -940 ENSMUSG00000081528.1 ENSMUSG00000081528 ENSMUST00000121747 Gm12924 processed_pseudogene Interval_63867 chr16 4084271 4084929 + 0 NA exon (ENSMUSG00000022521.10, exon 31 of 31) protein_coding-exon (ENSMUSG00000022521.10, exon 31 of 31) -6825 ENSMUSG00000005981.11 ENSMUSG00000005981 ENSMUST00000138594 Trap1 protein_coding Interval_60808 chr15 76886570 76888388 + 0 NA intron (ENSMUSG00000033669.8, intron 3 of 3) protein_coding-intron (ENSMUSG00000033669.8, intron 3 of 4) 8045 ENSMUSG00000116024.1 ENSMUSG00000116024 ENSMUST00000230214 Gm49527 protein_coding Interval_20022 chr10 112109590 112109910 + 0 NA Intergenic Intergenic -8202 ENSMUSG00000089667.1 ENSMUSG00000089667 ENSMUST00000161922 Gm15914 processed_pseudogene Interval_66329 chr16 33184896 33186181 + 0 NA exon (ENSMUSG00000022807.9, exon 1 of 13) protein_coding-exon (ENSMUSG00000022807.9, exon 1 of 13) 467 ENSMUSG00000022807.9 ENSMUSG00000022807 ENSMUST00000231617 Osbpl11 protein_coding Interval_74079 chr17 46457922 46458938 + 0 NA exon (ENSMUSG00000015599.9, exon 13 of 13) protein_coding-exon (ENSMUSG00000015599.9, exon 13 of 13) -18077 ENSMUSG00000114244.1 ENSMUSG00000114244 ENSMUST00000224870 Gm47119 antisense Interval_37592 chr12 70134617 70134956 + 0 NA Intergenic Intergenic -19371 ENSMUSG00000090121.10 ENSMUSG00000090121 ENSMUST00000161541 Abhd12b protein_coding Interval_149386 chr7 98034042 98034260 + 0 NA intron (ENSMUSG00000035582.13, intron 15 of 16) protein_coding-intron (ENSMUSG00000035582.13, intron 16 of 17) 56977 ENSMUSG00000030761.16 ENSMUSG00000030761 ENSMUST00000131632 Myo7a protein_coding Interval_11694 chr1 184724172 184724948 + 0 NA Intergenic Intergenic 7038 ENSMUSG00000039377.7 ENSMUSG00000039377 ENSMUST00000174257 Hlx protein_coding Interval_13563 chr10 19711722 19712953 + 0 NA promoter-TSS (ENSMUSG00000020007.4) protein_coding-promoter-TSS (ENSMUSG00000020007.4) -297 ENSMUSG00000020007.4 ENSMUSG00000020007 ENSMUST00000217389 Il20ra protein_coding Interval_168721 chr9 86338561 86338833 + 0 NA intron (ENSMUSG00000032415.14, intron 7 of 7) protein_coding-intron (ENSMUSG00000032415.14, intron 9 of 9) -22013 ENSMUSG00000083731.1 ENSMUSG00000083731 ENSMUST00000117532 Gm16202 processed_pseudogene Interval_116793 chr4 117322058 117322459 + 0 NA intron (ENSMUSG00000028677.19, intron 2 of 2) protein_coding-intron (ENSMUSG00000028677.19, intron 2 of 14) 26114 ENSMUSG00000085749.1 ENSMUSG00000085749 ENSMUST00000139618 Gm12843 antisense Interval_81534 chr18 61529451 61529790 + 0 NA intron (ENSMUSG00000045094.8, intron 1 of 3) protein_coding-intron (ENSMUSG00000045094.8, intron 1 of 12) 6955 ENSMUSG00000045094.8 ENSMUSG00000045094 ENSMUST00000237557 Arhgef37 protein_coding Interval_106634 chr3 97946550 97947169 + 0 NA intron (ENSMUSG00000074388.3, intron 1 of 1) lincRNA-intron (ENSMUSG00000074388.3, intron 1 of 1) 16686 ENSMUSG00000074388.3 ENSMUSG00000074388 ENSMUST00000098828 Gm5544 lincRNA Interval_57289 chr15 8451025 8451723 + 0 NA Intergenic Intergenic -6911 ENSMUSG00000022141.7 ENSMUSG00000022141 ENSMUST00000052965 Nipbl protein_coding Interval_79130 chr18 24848903 24849422 + 0 NA intron (ENSMUSG00000034295.10, intron 3 of 24) protein_coding-intron (ENSMUSG00000034295.10, intron 3 of 26) 87999 ENSMUSG00000088920.1 ENSMUSG00000088920 ENSMUST00000158295 Gm24294 misc_RNA Interval_127459 chr5 104088578 104089890 + 0 NA intron (ENSMUSG00000029309.7, intron 6 of 10) protein_coding-intron (ENSMUSG00000029309.7, intron 6 of 10) -11642 ENSMUSG00000091034.8 ENSMUSG00000091034 ENSMUST00000178967 Gm17660 protein_coding Interval_154918 chr8 25043782 25044849 + 0 NA intron (ENSMUSG00000031557.16, intron 10 of 11) protein_coding-intron (ENSMUSG00000031557.16, intron 10 of 11) 6387 ENSMUSG00000086289.3 ENSMUSG00000086289 ENSMUST00000211059 Gm16933 lincRNA Interval_127551 chr5 105153874 105154215 + 0 NA Intergenic Intergenic -14500 ENSMUSG00000079363.7 ENSMUSG00000079363 ENSMUST00000198278 Gbp4 protein_coding Interval_96042 chr2 119384514 119385813 + 0 NA intron (ENSMUSG00000034154.15, intron 29 of 35) protein_coding-intron (ENSMUSG00000034154.15, intron 29 of 35) 33934 ENSMUSG00000027313.3 ENSMUSG00000027313 ENSMUST00000028780 Chac1 protein_coding Interval_110012 chr3 152454447 152455235 + 0 NA intron (ENSMUSG00000039068.16, intron 9 of 11) protein_coding-intron (ENSMUSG00000039068.16, intron 11 of 13) 58709 ENSMUSG00000039068.16 ENSMUSG00000039068 ENSMUST00000135044 Zzz3 protein_coding Interval_150456 chr7 110776819 110777615 + 0 NA promoter-TSS (ENSMUSG00000005686.17) protein_coding-promoter-TSS (ENSMUSG00000005686.17) -7872 ENSMUSG00000110062.1 ENSMUSG00000110062 ENSMUST00000209731 B430319F04Rik TEC Interval_60416 chr15 73627768 73628042 + 0 NA intron (ENSMUSG00000079020.9, intron 1 of 1) protein_coding-intron (ENSMUSG00000079020.9, intron 1 of 1) -17947 ENSMUSG00000099958.1 ENSMUSG00000099958 ENSMUST00000188278 1700010B13Rik processed_transcript Interval_84880 chr19 18586823 18587341 + 0 NA intron (ENSMUSG00000024725.13, intron 8 of 10) protein_coding-intron (ENSMUSG00000024725.13, intron 7 of 9) 5627 ENSMUSG00000080783.1 ENSMUSG00000080783 ENSMUST00000117398 Gm8250 processed_pseudogene Interval_15582 chr10 51812680 51812882 + 0 NA Intergenic Intergenic -25840 ENSMUSG00000112337.1 ENSMUSG00000112337 ENSMUST00000217696 Gm47614 lincRNA Interval_34139 chr11 120853792 120854404 + 0 NA intron (ENSMUSG00000048445.6, intron 5 of 5) protein_coding-intron (ENSMUSG00000048445.6, intron 18 of 18) 19573 ENSMUSG00000048445.6 ENSMUSG00000048445 ENSMUST00000143895 Ccdc57 protein_coding Interval_159556 chr8 95440243 95440561 + 0 NA Intergenic Intergenic -5558 ENSMUSG00000031796.7 ENSMUSG00000031796 ENSMUST00000212131 Cfap20 protein_coding Interval_165905 chr9 54547515 54547788 + 0 NA intron (ENSMUSG00000037493.6, intron 4 of 5) protein_coding-intron (ENSMUSG00000037493.6, intron 4 of 5) 8663 ENSMUSG00000046460.15 ENSMUSG00000046460 ENSMUST00000238614 Sh2d7 protein_coding Interval_136581 chr6 56038491 56038866 + 0 NA Intergenic Intergenic 21181 ENSMUSG00000002930.6 ENSMUSG00000002930 ENSMUST00000052827 Ppp1r17 protein_coding Interval_144875 chr7 28719235 28720032 + 0 NA intron (ENSMUSG00000030598.15, intron 1 of 1) protein_coding-intron (ENSMUSG00000030598.15, intron 1 of 6) -12867 ENSMUSG00000030598.15 ENSMUSG00000030598 ENSMUST00000167118 Fbxo17 protein_coding Interval_26152 chr11 54766949 54767168 + 0 NA intron (ENSMUSG00000052298.12, intron 1 of 4) protein_coding-intron (ENSMUSG00000052298.12, intron 1 of 5) -20234 ENSMUSG00000082503.1 ENSMUSG00000082503 ENSMUST00000120487 Gm12229 processed_pseudogene Interval_28685 chr11 77746783 77747603 + 0 NA intron (ENSMUSG00000081924.1, intron 1 of 2) processed_pseudogene-intron (ENSMUSG00000081924.1, intron 1 of 2) 152 ENSMUSG00000081924.1 ENSMUSG00000081924 ENSMUST00000117231 Gm11191 processed_pseudogene Interval_13738 chr10 21668482 21669491 + 0 NA Intergenic Intergenic -17425 ENSMUSG00000056716.10 ENSMUSG00000056716 ENSMUST00000071008 Gm5420 lincRNA Interval_46099 chr13 61712665 61713295 + 0 NA intron (ENSMUSG00000113295.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000113295.1, intron 1 of 2) -1609 ENSMUSG00000061330.8 ENSMUSG00000061330 ENSMUST00000077163 Gm6436 processed_pseudogene Interval_58268 chr15 31518900 31519344 + 0 NA intron (ENSMUSG00000039100.10, intron 1 of 4) protein_coding-intron (ENSMUSG00000039100.10, intron 1 of 25) 2151 ENSMUSG00000115224.1 ENSMUSG00000115224 ENSMUST00000226633 Gm49215 processed_pseudogene Interval_64158 chr16 8768737 8771349 + 0 NA intron (ENSMUSG00000022710.17, intron 1 of 31) protein_coding-intron (ENSMUSG00000022710.17, intron 1 of 31) -3767 ENSMUSG00000084737.1 ENSMUSG00000084737 ENSMUST00000122788 Gm25805 snRNA Interval_85395 chr19 25467244 25467429 + 0 NA Intergenic Intergenic -13273 ENSMUSG00000064843.1 ENSMUSG00000064843 ENSMUST00000082909 Gm26207 snRNA Interval_36892 chr12 55002114 55002339 + 0 NA intron (ENSMUSG00000035021.13, intron 1 of 3) protein_coding-intron (ENSMUSG00000035021.13, intron 1 of 3) 5154 ENSMUSG00000088922.1 ENSMUSG00000088922 ENSMUST00000158297 Gm24296 snRNA Interval_114922 chr4 86971876 86972162 + 0 NA Intergenic Intergenic 41328 ENSMUSG00000038007.14 ENSMUSG00000038007 ENSMUST00000135874 Acer2 protein_coding Interval_10915 chr1 176970449 176971292 + 0 NA intron (ENSMUSG00000026504.17, intron 17 of 18) protein_coding-intron (ENSMUSG00000026504.17, intron 16 of 17) -3366 ENSMUSG00000103251.1 ENSMUSG00000103251 ENSMUST00000191687 Gm37519 TEC Interval_42990 chr13 22422912 22423447 + 0 NA Intergenic Intergenic -18093 ENSMUSG00000084924.3 ENSMUSG00000084924 ENSMUST00000120171 Vmn1r-ps103 unprocessed_pseudogene Interval_66972 chr16 38945086 38945918 + 0 NA intron (ENSMUSG00000022790.14, intron 1 of 6) protein_coding-intron (ENSMUSG00000022790.14, intron 1 of 6) 18293 ENSMUSG00000089607.1 ENSMUSG00000089607 ENSMUST00000158982 Gm22500 snRNA Interval_100856 chr2 172922274 172922970 + 0 NA intron (ENSMUSG00000008999.7, intron 1 of 1) protein_coding-intron (ENSMUSG00000008999.7, intron 1 of 6) 17470 ENSMUSG00000008999.7 ENSMUSG00000008999 ENSMUST00000137247 Bmp7 protein_coding Interval_78494 chr18 13694437 13695438 + 0 NA intron (ENSMUSG00000024420.9, intron 4 of 5) protein_coding-intron (ENSMUSG00000024420.9, intron 7 of 7) -93537 ENSMUSG00000117608.1 ENSMUSG00000117608 ENSMUST00000234112 AC103362.1 lincRNA Interval_87592 chr19 53630074 53630883 + 0 NA intron (ENSMUSG00000024974.10, intron 17 of 28) protein_coding-intron (ENSMUSG00000024974.10, intron 17 of 28) -12880 ENSMUSG00000024974.10 ENSMUSG00000024974 ENSMUST00000171083 Smc3 protein_coding Interval_14998 chr10 41802559 41803410 + 0 NA intron (ENSMUSG00000019813.16, intron 1 of 1) protein_coding-intron (ENSMUSG00000019813.16, intron 1 of 10) 6646 ENSMUSG00000019813.16 ENSMUSG00000019813 ENSMUST00000215496 Cep57l1 protein_coding Interval_173270 chrX 75775545 75776495 + 0 NA Intergenic Intergenic 52348 ENSMUSG00000081996.1 ENSMUSG00000081996 ENSMUST00000117092 Gm7153 processed_pseudogene Interval_12296 chr1 191487352 191487631 + 0 NA Intergenic Intergenic 6414 ENSMUSG00000103517.1 ENSMUSG00000103517 ENSMUST00000195294 Gm37432 lincRNA Interval_22931 chr11 17545304 17545515 + 0 NA Intergenic Intergenic -2877 ENSMUSG00000087833.1 ENSMUSG00000087833 ENSMUST00000157208 Gm23959 misc_RNA Interval_139992 chr6 113266613 113267686 + 0 NA intron (ENSMUSG00000030269.14, intron 3 of 6) protein_coding-intron (ENSMUSG00000030269.14, intron 13 of 18) 9781 ENSMUSG00000090194.1 ENSMUSG00000090194 ENSMUST00000162239 Gm16161 antisense Interval_68715 chr16 84934402 84934997 + 0 NA Intergenic Intergenic -37515 ENSMUSG00000115518.1 ENSMUSG00000115518 ENSMUST00000227835 Gm10791 antisense Interval_142198 chr6 138171664 138172277 + 0 NA Intergenic Intergenic 31416 ENSMUSG00000008540.11 ENSMUSG00000008540 ENSMUST00000125810 Mgst1 protein_coding Interval_156877 chr8 61401728 61402038 + 0 NA Intergenic Intergenic -20496 ENSMUSG00000109610.1 ENSMUSG00000109610 ENSMUST00000210343 Gm7432 processed_pseudogene Interval_49973 chr13 119167475 119167717 + 0 NA Intergenic Intergenic 102008 ENSMUSG00000105411.1 ENSMUSG00000105411 ENSMUST00000199467 Gm44488 miRNA Interval_152380 chr7 132599121 132601770 + 0 NA promoter-TSS (ENSMUSG00000048528.7) protein_coding-promoter-TSS (ENSMUSG00000048528.7) -808 ENSMUSG00000048528.7 ENSMUSG00000048528 ENSMUST00000054562 Nkx1-2 protein_coding Interval_69856 chr16 97593061 97593938 + 0 NA intron (ENSMUSG00000000385.8, intron 3 of 3) protein_coding-intron (ENSMUSG00000000385.8, intron 3 of 13) -26162 ENSMUSG00000000385.8 ENSMUSG00000000385 ENSMUST00000232141 Tmprss2 protein_coding Interval_46193 chr13 62399068 62399659 + 0 NA Intergenic Intergenic 8515 ENSMUSG00000113623.1 ENSMUSG00000113623 ENSMUST00000221446 Gm48691 transcribed_processed_pseudogene Interval_153558 chr8 3411961 3412483 + 0 NA intron (ENSMUSG00000004568.13, intron 1 of 3) protein_coding-intron (ENSMUSG00000004568.13, intron 1 of 19) -45817 ENSMUSG00000108955.1 ENSMUSG00000108955 ENSMUST00000207266 Gm44775 TEC Interval_4607 chr1 75425109 75426038 + 0 NA intron (ENSMUSG00000026207.16, intron 2 of 4) protein_coding-intron (ENSMUSG00000026207.16, intron 31 of 40) -11369 ENSMUSG00000033021.16 ENSMUSG00000033021 ENSMUST00000124539 Gmppa protein_coding Interval_97387 chr2 135692442 135692977 + 0 NA intron (ENSMUSG00000085709.1, intron 1 of 1) protein_coding-intron (ENSMUSG00000039943.16, intron 1 of 28) 445 ENSMUSG00000085709.1 ENSMUSG00000085709 ENSMUST00000152250 Gm14211 lincRNA Interval_45204 chr13 53176528 53178888 + 0 NA intron (ENSMUSG00000021464.14, intron 1 of 8) protein_coding-intron (ENSMUSG00000021464.14, intron 1 of 8) 97950 ENSMUSG00000021464.14 ENSMUSG00000021464 ENSMUST00000149299 Ror2 protein_coding Interval_69168 chr16 91085994 91087197 + 0 NA intron (ENSMUSG00000039851.11, intron 1 of 1) protein_coding-intron (ENSMUSG00000039851.11, intron 1 of 1) 8527 ENSMUSG00000039851.11 ENSMUSG00000039851 ENSMUST00000146047 4932438H23Rik protein_coding Interval_83688 chr19 3741277 3741814 + 0 NA intron (ENSMUSG00000117773.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000117773.1, intron 1 of 1) 992 ENSMUSG00000117773.1 ENSMUSG00000117773 ENSMUST00000235154 Gm50375 lincRNA Interval_36463 chr12 45198022 45198190 + 0 NA Intergenic Intergenic 89099 ENSMUSG00000088852.1 ENSMUSG00000088852 ENSMUST00000158227 Gm24731 snoRNA Interval_171551 chr9 119149426 119150073 + 0 NA exon (ENSMUSG00000010651.4, exon 8 of 12) protein_coding-exon (ENSMUSG00000010651.4, exon 8 of 12) 314 ENSMUSG00000010651.4 ENSMUSG00000010651 ENSMUST00000127952 Acaa1b protein_coding Interval_31554 chr11 101333828 101336236 + 0 NA intron (ENSMUSG00000019326.14, intron 1 of 3) protein_coding-intron (ENSMUSG00000019326.14, intron 1 of 4) 4427 ENSMUSG00000019326.14 ENSMUSG00000019326 ENSMUST00000017316 Aoc3 protein_coding Interval_26703 chr11 59847249 59848752 + 0 NA promoter-TSS (ENSMUSG00000032615.14) protein_coding-promoter-TSS (ENSMUSG00000032615.14) 8553 ENSMUSG00000032615.14 ENSMUSG00000032615 ENSMUST00000137695 Nt5m protein_coding Interval_81496 chr18 61155834 61156152 + 0 NA intron (ENSMUSG00000024622.8, intron 7 of 17) protein_coding-intron (ENSMUSG00000024622.8, intron 8 of 20) 11636 ENSMUSG00000024622.8 ENSMUSG00000024622 ENSMUST00000237498 Hmgxb3 protein_coding Interval_35242 chr12 18725622 18727441 + 0 NA Intergenic Intergenic 1271 ENSMUSG00000113705.1 ENSMUSG00000113705 ENSMUST00000223042 Gm48411 processed_pseudogene Interval_129989 chr5 123555138 123556150 + 0 NA intron (ENSMUSG00000029434.12, intron 1 of 1) protein_coding-intron (ENSMUSG00000029434.12, intron 7 of 12) 3375 ENSMUSG00000029434.12 ENSMUSG00000029434 ENSMUST00000197467 Vps33a protein_coding Interval_26138 chr11 54702865 54704293 + 0 NA Intergenic Intergenic -25098 ENSMUSG00000086039.1 ENSMUSG00000086039 ENSMUST00000147847 Gm12227 antisense Interval_148327 chr7 80526693 80527285 + 0 NA intron (ENSMUSG00000030528.12, intron 1 of 21) protein_coding-intron (ENSMUSG00000030528.12, intron 1 of 21) 19202 ENSMUSG00000091989.1 ENSMUSG00000091989 ENSMUST00000166096 Ndufab1-ps processed_pseudogene Interval_163183 chr9 17324976 17325305 + 0 NA Intergenic Intergenic 177569 ENSMUSG00000111405.1 ENSMUSG00000111405 ENSMUST00000214774 Gm2594 processed_pseudogene Interval_1056 chr1 14614885 14615099 + 0 NA Intergenic Intergenic -137945 ENSMUSG00000054493.2 ENSMUSG00000054493 ENSMUST00000067599 Gm9947 antisense Interval_54038 chr14 64665322 64666819 + 0 NA intron (ENSMUSG00000060012.9, intron 1 of 2) protein_coding-intron (ENSMUSG00000060012.9, intron 1 of 39) 13510 ENSMUSG00000060012.9 ENSMUSG00000060012 ENSMUST00000224677 Kif13b protein_coding Interval_162050 chr8 124735537 124735815 + 0 NA Intergenic Intergenic 7273 ENSMUSG00000031982.5 ENSMUSG00000031982 ENSMUST00000212959 Arv1 protein_coding Interval_15459 chr10 47076017 47076267 + 0 NA intron (ENSMUSG00000110843.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000110843.1, intron 1 of 2) -4392 ENSMUSG00000111057.1 ENSMUSG00000111057 ENSMUST00000216808 Gm3442 processed_pseudogene Interval_156603 chr8 54370917 54371601 + 0 NA Intergenic Intergenic 142891 ENSMUSG00000110403.1 ENSMUSG00000110403 ENSMUST00000209929 Gm45553 TEC Interval_171079 chr9 114427606 114429749 + 0 NA intron (ENSMUSG00000045594.10, intron 4 of 14) protein_coding-intron (ENSMUSG00000045594.10, intron 5 of 15) 27569 ENSMUSG00000045594.10 ENSMUSG00000045594 ENSMUST00000217583 Glb1 protein_coding Interval_118627 chr4 132858817 132859203 + 0 NA intron (ENSMUSG00000028879.4, intron 3 of 4) protein_coding-intron (ENSMUSG00000028879.4, intron 6 of 8) 4250 ENSMUSG00000028879.4 ENSMUSG00000028879 ENSMUST00000137109 Stx12 protein_coding Interval_53402 chr14 56988459 56989280 + 0 NA Intergenic Intergenic -26265 ENSMUSG00000096144.3 ENSMUSG00000096144 ENSMUST00000225045 B020004C17Rik lincRNA Interval_169440 chr9 97315333 97316468 + 0 NA Intergenic Intergenic 26714 ENSMUSG00000104167.1 ENSMUSG00000104167 ENSMUST00000192385 A030012G06Rik TEC Interval_105773 chr3 89259098 89259510 + 0 NA promoter-TSS (ENSMUSG00000042737.9) protein_coding-promoter-TSS (ENSMUSG00000042737.9) -7335 ENSMUSG00000042737.9 ENSMUSG00000042737 ENSMUST00000137975 Dpm3 protein_coding Interval_125544 chr5 69613768 69613934 + 0 NA Intergenic Intergenic -21577 ENSMUSG00000029209.15 ENSMUSG00000029209 ENSMUST00000153536 Gnpda2 protein_coding Interval_51413 chr14 27347011 27349363 + 0 NA intron (ENSMUSG00000021895.10, intron 1 of 9) protein_coding-intron (ENSMUSG00000021895.10, intron 2 of 10) 32663 ENSMUSG00000093034.1 ENSMUSG00000093034 ENSMUST00000175293 Gm23633 miRNA Interval_49149 chr13 108599638 108599874 + 0 NA intron (ENSMUSG00000021699.17, intron 2 of 4) protein_coding-intron (ENSMUSG00000021699.17, intron 1 of 3) -70847 ENSMUSG00000059751.7 ENSMUSG00000059751 ENSMUST00000074680 Rps3a3 processed_pseudogene Interval_81239 chr18 56687522 56688915 + 0 NA Intergenic Intergenic 20440 ENSMUSG00000118275.1 ENSMUSG00000118275 ENSMUST00000235398 Gm50289 processed_pseudogene Interval_85032 chr19 21683030 21683276 + 0 NA intron (ENSMUSG00000047368.4, intron 1 of 1) protein_coding-intron (ENSMUSG00000047368.4, intron 3 of 3) 2519 ENSMUSG00000047368.4 ENSMUSG00000047368 ENSMUST00000236549 Abhd17b protein_coding Interval_74234 chr17 47610708 47611953 + 0 NA promoter-TSS (ENSMUSG00000092558.3) protein_coding-promoter-TSS (ENSMUSG00000092558.3) 162 ENSMUSG00000023988.8 ENSMUSG00000023988 ENSMUST00000024783 Bysl protein_coding Interval_19326 chr10 96724720 96725051 + 0 NA Intergenic Intergenic 13078 ENSMUSG00000112362.1 ENSMUSG00000112362 ENSMUST00000219424 Gm48507 processed_pseudogene Interval_92353 chr2 59214504 59215193 + 0 NA intron (ENSMUSG00000026991.20, intron 2 of 4) protein_coding-intron (ENSMUSG00000026991.20, intron 2 of 21) 52921 ENSMUSG00000026991.20 ENSMUSG00000026991 ENSMUST00000124127 Pkp4 protein_coding Interval_170691 chr9 110116604 110117991 + 0 NA promoter-TSS (ENSMUSG00000032481.17) protein_coding-promoter-TSS (ENSMUSG00000032481.17) 4508 ENSMUSG00000064877.3 ENSMUSG00000064877 ENSMUST00000082943 Gm23377 snoRNA Interval_173179 chrX 73895637 73896385 + 0 NA promoter-TSS (ENSMUSG00000031391.18) protein_coding-promoter-TSS (ENSMUSG00000031391.18) 3908 ENSMUSG00000031390.8 ENSMUSG00000031390 ENSMUST00000114395 Avpr2 protein_coding Interval_54573 chr14 70745624 70745915 + 0 NA intron (ENSMUSG00000022100.14, intron 1 of 21) protein_coding-intron (ENSMUSG00000022100.14, intron 1 of 27) -30110 ENSMUSG00000022102.13 ENSMUSG00000022102 ENSMUST00000164691 Dok2 protein_coding Interval_43452 chr13 31279862 31280597 + 0 NA Intergenic Intergenic -39143 ENSMUSG00000087460.2 ENSMUSG00000087460 ENSMUST00000153175 4930401O12Rik lincRNA Interval_86090 chr19 36496735 36496970 + 0 NA Intergenic Intergenic -45695 ENSMUSG00000114235.1 ENSMUSG00000114235 ENSMUST00000224716 F530104D19Rik antisense Interval_85508 chr19 27693472 27694166 + 0 NA Intergenic Intergenic 10188 ENSMUSG00000088266.1 ENSMUSG00000088266 ENSMUST00000157641 Gm24782 snoRNA Interval_19966 chr10 111559072 111560589 + 0 NA Intergenic Intergenic 34443 ENSMUSG00000097082.1 ENSMUSG00000097082 ENSMUST00000181547 4933440J02Rik lincRNA Interval_158259 chr8 80661959 80662205 + 0 NA intron (ENSMUSG00000042353.9, intron 2 of 7) protein_coding-intron (ENSMUSG00000042353.9, intron 2 of 7) 48779 ENSMUSG00000031715.14 ENSMUSG00000031715 ENSMUST00000148455 Smarca5 protein_coding Interval_69974 chr17 3665856 3666241 + 0 NA intron (ENSMUSG00000023802.4, intron 9 of 12) protein_coding-intron (ENSMUSG00000023802.4, intron 9 of 12) 30213 ENSMUSG00000023802.4 ENSMUSG00000023802 ENSMUST00000115800 Nox3 protein_coding Interval_10866 chr1 176331343 176331965 + 0 NA Intergenic Intergenic 7989 ENSMUSG00000102446.1 ENSMUSG00000102446 ENSMUST00000193904 Gm17965 processed_pseudogene Interval_97839 chr2 144378710 144378960 + 0 NA intron (ENSMUSG00000027425.18, intron 2 of 3) protein_coding-intron (ENSMUSG00000027425.18, intron 3 of 10) 9839 ENSMUSG00000098387.2 ENSMUSG00000098387 ENSMUST00000183618 Pet117 protein_coding Interval_168480 chr9 81968430 81969314 + 0 NA intron (ENSMUSG00000043289.12, intron 3 of 4) protein_coding-intron (ENSMUSG00000043289.12, intron 3 of 4) -59708 ENSMUSG00000103536.1 ENSMUSG00000103536 ENSMUST00000191743 Gm37837 TEC Interval_55360 chr14 84717503 84717734 + 0 NA Intergenic Intergenic 41465 ENSMUSG00000115743.1 ENSMUSG00000115743 ENSMUST00000227353 Gm7004 processed_pseudogene Interval_71263 chr17 21733245 21734493 + 0 NA exon (ENSMUSG00000061544.13, exon 1 of 6) protein_coding-exon (ENSMUSG00000061544.13, exon 1 of 6) 145 ENSMUSG00000061544.13 ENSMUSG00000061544 ENSMUST00000182603 Zfp229 protein_coding Interval_99825 chr2 165150824 165151323 + 0 NA intron (ENSMUSG00000053166.14, intron 3 of 10) protein_coding-intron (ENSMUSG00000053166.14, intron 4 of 11) -8339 ENSMUSG00000086630.1 ENSMUSG00000086630 ENSMUST00000124728 Gm14397 antisense Interval_17102 chr10 71362014 71362403 + 0 NA intron (ENSMUSG00000060733.13, intron 1 of 5) protein_coding-intron (ENSMUSG00000060733.13, intron 1 of 5) 14372 ENSMUSG00000060733.13 ENSMUSG00000060733 ENSMUST00000145521 Ipmk protein_coding Interval_611 chr1 8916027 8916975 + 0 NA intron (ENSMUSG00000025909.16, intron 3 of 20) protein_coding-intron (ENSMUSG00000025909.16, intron 3 of 19) 35921 ENSMUSG00000025909.16 ENSMUSG00000025909 ENSMUST00000126083 Sntg1 protein_coding Interval_132914 chr5 148715237 148715525 + 0 NA intron (ENSMUSG00000106733.1, intron 2 of 2) lincRNA-intron (ENSMUSG00000106733.1, intron 2 of 2) 3915 ENSMUSG00000106733.1 ENSMUSG00000106733 ENSMUST00000200820 Gm36186 lincRNA Interval_168877 chr9 88295040 88295543 + 0 NA Intergenic Intergenic 8567 ENSMUSG00000111795.1 ENSMUSG00000111795 ENSMUST00000215074 Gm47620 processed_pseudogene Interval_162103 chr8 125128457 125128727 + 0 NA intron (ENSMUSG00000043051.17, intron 5 of 13) protein_coding-intron (ENSMUSG00000043051.17, intron 4 of 12) 40605 ENSMUSG00000043051.17 ENSMUSG00000043051 ENSMUST00000126111 Disc1 protein_coding Interval_105281 chr3 84542449 84542924 + 0 NA intron (ENSMUSG00000102805.5, intron 3 of 9) protein_coding-intron (ENSMUSG00000074513.9, intron 2 of 7) 10766 ENSMUSG00000085625.1 ENSMUSG00000085625 ENSMUST00000155930 Gm8813 processed_pseudogene Interval_49775 chr13 114963377 114963622 + 0 NA intron (ENSMUSG00000042284.10, intron 28 of 28) protein_coding-intron (ENSMUSG00000042284.10, intron 28 of 28) -28431 ENSMUSG00000114703.1 ENSMUSG00000114703 ENSMUST00000225140 Gm47776 processed_pseudogene Interval_75695 chr17 70722739 70722958 + 0 NA intron (ENSMUSG00000003279.17, intron 5 of 10) protein_coding-intron (ENSMUSG00000003279.17, intron 9 of 14) 32734 ENSMUSG00000097282.1 ENSMUSG00000097282 ENSMUST00000181546 5031415H12Rik antisense Interval_58439 chr15 34532415 34533376 + 0 NA Intergenic Intergenic 1181 ENSMUSG00000084607.1 ENSMUSG00000084607 ENSMUST00000122658 Gm22208 snRNA Interval_38983 chr12 84277878 84278611 + 0 NA Intergenic Intergenic -7155 ENSMUSG00000072946.12 ENSMUSG00000072946 ENSMUST00000123693 Ptgr2 protein_coding Interval_96663 chr2 126989310 126990502 + 0 NA Intergenic Intergenic -18848 ENSMUSG00000001998.15 ENSMUSG00000001998 ENSMUST00000142740 Ap4e1 protein_coding Interval_20026 chr10 112173460 112173925 + 0 NA intron (ENSMUSG00000035694.15, intron 1 of 16) protein_coding-intron (ENSMUSG00000035694.15, intron 2 of 17) 8016 ENSMUSG00000035694.15 ENSMUSG00000035694 ENSMUST00000132994 Caps2 protein_coding Interval_56713 chr14 121579168 121579564 + 0 NA TTS (ENSMUSG00000025558.19) protein_coding-TTS (ENSMUSG00000025558.19) 55822 ENSMUSG00000115408.1 ENSMUSG00000115408 ENSMUST00000226518 Gm4529 processed_pseudogene Interval_61255 chr15 80279804 80281347 + 0 NA Intergenic Intergenic -16329 ENSMUSG00000051518.8 ENSMUSG00000051518 ENSMUST00000229962 Rps19bp1 protein_coding Interval_146387 chr7 45632364 45632941 + 0 NA exon (ENSMUSG00000044562.12, exon 5 of 12) protein_coding-exon (ENSMUSG00000044562.12, exon 5 of 12) 157 ENSMUSG00000109998.1 ENSMUSG00000109998 ENSMUST00000209998 Gm45437 antisense Interval_31871 chr11 103488617 103488916 + 0 NA intron (ENSMUSG00000078632.4, intron 5 of 13) protein_coding-intron (ENSMUSG00000078632.4, intron 5 of 13) 15831 ENSMUSG00000078632.4 ENSMUSG00000078632 ENSMUST00000153273 Lrrc37a protein_coding Interval_162461 chr8 129090387 129090760 + 0 NA intron (ENSMUSG00000056018.14, intron 2 of 10) protein_coding-intron (ENSMUSG00000056018.14, intron 2 of 14) 22853 ENSMUSG00000077771.1 ENSMUSG00000077771 ENSMUST00000104583 Gm22374 snoRNA Interval_106305 chr3 95268638 95268909 + 0 NA exon (ENSMUSG00000015711.8, exon 1 of 3) protein_coding-exon (ENSMUSG00000015711.8, exon 1 of 3) 171 ENSMUSG00000015711.8 ENSMUSG00000015711 ENSMUST00000148959 Prune1 protein_coding Interval_103605 chr3 51135417 51136753 + 0 NA Intergenic Intergenic 32425 ENSMUSG00000103464.1 ENSMUSG00000103464 ENSMUST00000194318 Gm38246 lincRNA Interval_2214 chr1 37083151 37085494 + 0 NA intron (ENSMUSG00000050122.19, intron 7 of 26) protein_coding-intron (ENSMUSG00000050122.19, intron 6 of 24) 48942 ENSMUSG00000103603.1 ENSMUSG00000103603 ENSMUST00000195303 Gm37020 antisense Interval_4832 chr1 79997902 79999260 + 0 NA Intergenic Intergenic 41001 ENSMUSG00000100397.1 ENSMUSG00000100397 ENSMUST00000190355 Gm28071 processed_pseudogene Interval_65972 chr16 30627475 30629028 + 0 NA Intergenic Intergenic 28528 ENSMUSG00000046546.3 ENSMUSG00000046546 ENSMUST00000059078 Fam43a protein_coding Interval_130408 chr5 127375117 127375433 + 0 NA intron (ENSMUSG00000034324.16, intron 2 of 8) protein_coding-intron (ENSMUSG00000034324.16, intron 2 of 8) 66258 ENSMUSG00000104971.1 ENSMUSG00000104971 ENSMUST00000196548 9430087B13Rik TEC Interval_69622 chr16 94666310 94667333 + 0 NA TTS (ENSMUSG00000022897.15) protein_coding-TTS (ENSMUSG00000022897.15) 46444 ENSMUSG00000081692.1 ENSMUSG00000081692 ENSMUST00000119372 Gm15971 processed_pseudogene Interval_166243 chr9 57750690 57750974 + 0 NA TTS (ENSMUSG00000032316.8) protein_coding-TTS (ENSMUSG00000032316.8) 14357 ENSMUSG00000032316.8 ENSMUSG00000032316 ENSMUST00000215158 Clk3 protein_coding Interval_140504 chr6 118977643 118978599 + 0 NA intron (ENSMUSG00000051331.16, intron 3 of 3) protein_coding-intron (ENSMUSG00000051331.16, intron 3 of 46) 143221 ENSMUSG00000089115.1 ENSMUSG00000089115 ENSMUST00000158490 Gm25905 snRNA Interval_126927 chr5 97305454 97305629 + 0 NA Intergenic Intergenic -20363 ENSMUSG00000104717.1 ENSMUSG00000104717 ENSMUST00000197615 Gm33969 lincRNA Interval_24999 chr11 42793393 42793724 + 0 NA Intergenic Intergenic -103937 ENSMUSG00000084627.1 ENSMUSG00000084627 ENSMUST00000122678 Gm25543 misc_RNA Interval_69834 chr16 97292151 97293786 + 0 NA Intergenic Intergenic -112301 ENSMUSG00000116686.1 ENSMUSG00000116686 ENSMUST00000232315 Gm49681 processed_pseudogene Interval_164929 chr9 43179257 43180010 + 0 NA intron (ENSMUSG00000032015.16, intron 2 of 12) protein_coding-intron (ENSMUSG00000032015.16, intron 2 of 12) -36429 ENSMUSG00000032015.16 ENSMUSG00000032015 ENSMUST00000213862 Pou2f3 protein_coding Interval_12074 chr1 189560152 189560804 + 0 NA Intergenic Intergenic 79756 ENSMUSG00000103087.1 ENSMUSG00000103087 ENSMUST00000192679 Gm38122 TEC Interval_64070 chr16 7148688 7150043 + 0 NA intron (ENSMUSG00000008658.16, intron 1 of 12) protein_coding-intron (ENSMUSG00000008658.16, intron 3 of 14) -44382 ENSMUSG00000008658.16 ENSMUSG00000008658 ENSMUST00000231031 Rbfox1 protein_coding Interval_1767 chr1 33648588 33648795 + 0 NA intron (ENSMUSG00000026134.11, intron 5 of 13) protein_coding-intron (ENSMUSG00000026134.11, intron 5 of 13) -9090 ENSMUSG00000102093.1 ENSMUSG00000102093 ENSMUST00000185377 Gm17813 processed_pseudogene Interval_174717 chrX 164042312 164042504 + 0 NA Intergenic Intergenic -14427 ENSMUSG00000031373.4 ENSMUSG00000031373 ENSMUST00000126650 Car5b protein_coding Interval_23592 chr11 23632978 23634130 + 0 NA promoter-TSS (ENSMUSG00000042208.15) protein_coding-promoter-TSS (ENSMUSG00000042208.15) 77 ENSMUSG00000042208.15 ENSMUSG00000042208 ENSMUST00000131612 0610010F05Rik protein_coding Interval_79854 chr18 35585827 35586049 + 0 NA intron (ENSMUSG00000037236.16, intron 12 of 14) protein_coding-intron (ENSMUSG00000037236.16, intron 12 of 14) 11031 ENSMUSG00000102496.1 ENSMUSG00000102496 ENSMUST00000193225 Gm36989 TEC Interval_55071 chr14 77706819 77707521 + 0 NA intron (ENSMUSG00000022012.9, intron 12 of 13) protein_coding-intron (ENSMUSG00000022012.9, intron 17 of 18) -73310 ENSMUSG00000115363.1 ENSMUSG00000115363 ENSMUST00000227098 Gm49003 antisense Interval_159010 chr8 88779647 88779921 + 0 NA Intergenic Intergenic -26607 ENSMUSG00000056772.3 ENSMUSG00000056772 ENSMUST00000079841 Rps6-ps2 processed_pseudogene Interval_132126 chr5 142856568 142856823 + 0 NA Intergenic Intergenic -3496 ENSMUSG00000082308.1 ENSMUSG00000082308 ENSMUST00000117498 Gm15770 processed_pseudogene Interval_108269 chr3 123158658 123159593 + 0 NA intron (ENSMUSG00000050315.14, intron 1 of 3) protein_coding-intron (ENSMUSG00000050315.14, intron 1 of 4) 5347 ENSMUSG00000105562.1 ENSMUSG00000105562 ENSMUST00000197747 Gm43287 TEC Interval_160209 chr8 107132740 107134268 + 0 NA Intergenic Intergenic 14394 ENSMUSG00000102271.1 ENSMUSG00000102271 ENSMUST00000193420 C630050I24Rik TEC Interval_169393 chr9 96905203 96905961 + 0 NA promoter-TSS (ENSMUSG00000101209.1) processed_pseudogene-promoter-TSS (ENSMUSG00000101209.1) 75 ENSMUSG00000101209.1 ENSMUSG00000101209 ENSMUST00000186232 Gm8524 processed_pseudogene Interval_5601 chr1 90123132 90123496 + 0 NA intron (ENSMUSG00000026301.16, intron 6 of 18) protein_coding-intron (ENSMUSG00000026301.16, intron 6 of 18) -30314 ENSMUSG00000100850.1 ENSMUSG00000100850 ENSMUST00000190254 4930434B07Rik lincRNA Interval_131383 chr5 136827923 136828194 + 0 NA intron (ENSMUSG00000004415.15, intron 3 of 3) protein_coding-intron (ENSMUSG00000004415.15, intron 3 of 12) 10251 ENSMUSG00000004415.15 ENSMUSG00000004415 ENSMUST00000140245 Col26a1 protein_coding Interval_151580 chr7 124089304 124089654 + 0 NA intron (ENSMUSG00000078591.1, intron 1 of 1) protein_coding-intron (ENSMUSG00000078591.1, intron 1 of 1) -56802 ENSMUSG00000077176.1 ENSMUSG00000077176 ENSMUST00000103988 Gm25759 snoRNA Interval_92824 chr2 65955860 65956056 + 0 NA intron (ENSMUSG00000044647.16, intron 3 of 4) protein_coding-intron (ENSMUSG00000044647.16, intron 3 of 5) -1888 ENSMUSG00000085160.1 ENSMUSG00000085160 ENSMUST00000155350 Gm13617 antisense Interval_14516 chr10 34624501 34624917 + 0 NA Intergenic Intergenic 141177 ENSMUSG00000019779.15 ENSMUSG00000019779 ENSMUST00000215594 Frk protein_coding Interval_17467 chr10 77069495 77070632 + 0 NA intron (ENSMUSG00000001435.15, intron 21 of 40) protein_coding-intron (ENSMUSG00000001435.15, intron 21 of 40) -10066 ENSMUSG00000001435.15 ENSMUSG00000001435 ENSMUST00000156009 Col18a1 protein_coding Interval_119167 chr4 135949888 135950229 + 0 NA intron (ENSMUSG00000028672.13, intron 1 of 5) protein_coding-intron (ENSMUSG00000028672.13, intron 1 of 8) 1528 ENSMUSG00000028672.13 ENSMUSG00000028672 ENSMUST00000135644 Hmgcl protein_coding Interval_66380 chr16 33493010 33493479 + 0 NA intron (ENSMUSG00000022811.17, intron 6 of 7) protein_coding-intron (ENSMUSG00000022811.17, intron 7 of 8) 112381 ENSMUSG00000022811.17 ENSMUSG00000022811 ENSMUST00000089677 Zfp148 protein_coding Interval_42897 chr13 21215146 21216075 + 0 NA Intergenic Intergenic -28054 ENSMUSG00000113104.1 ENSMUSG00000113104 ENSMUST00000220690 Gm47806 antisense Interval_4447 chr1 74253058 74253265 + 0 NA intron (ENSMUSG00000006304.14, intron 5 of 10) protein_coding-intron (ENSMUSG00000006304.14, intron 4 of 9) 17077 ENSMUSG00000006304.14 ENSMUSG00000006304 ENSMUST00000113819 Arpc2 protein_coding Interval_164126 chr9 31711917 31712917 + 0 NA Intergenic Intergenic -34391 ENSMUSG00000110853.1 ENSMUSG00000110853 ENSMUST00000217207 Gm47436 lincRNA Interval_131497 chr5 137574552 137575095 + 0 NA TTS (ENSMUSG00000029716.13) protein_coding-TTS (ENSMUSG00000029716.13) 4959 ENSMUSG00000029716.13 ENSMUSG00000029716 ENSMUST00000199069 Tfr2 protein_coding Interval_81057 chr18 53383762 53384040 + 0 NA intron (ENSMUSG00000024535.16, intron 4 of 6) protein_coding-intron (ENSMUSG00000024535.16, intron 4 of 7) 34214 ENSMUSG00000024538.8 ENSMUSG00000024538 ENSMUST00000025419 Ppic protein_coding Interval_113149 chr4 48629068 48629671 + 0 NA intron (ENSMUSG00000028347.14, intron 5 of 9) protein_coding-intron (ENSMUSG00000028347.14, intron 5 of 9) -7565 ENSMUSG00000028347.14 ENSMUSG00000028347 ENSMUST00000141720 Tmeff1 protein_coding Interval_151894 chr7 127384478 127385302 + 0 NA exon (ENSMUSG00000030823.6, exon 3 of 3) protein_coding-exon (ENSMUSG00000030823.6, exon 3 of 3) 2223 ENSMUSG00000030823.6 ENSMUSG00000030823 ENSMUST00000164345 9130019O22Rik protein_coding Interval_114502 chr4 81399754 81400462 + 0 NA intron (ENSMUSG00000028402.18, intron 3 of 47) protein_coding-intron (ENSMUSG00000028402.18, intron 3 of 46) 42536 ENSMUSG00000028402.18 ENSMUSG00000028402 ENSMUST00000142273 Mpdz protein_coding Interval_75052 chr17 62532098 62532660 + 0 NA Intergenic Intergenic -75259 ENSMUSG00000064570.1 ENSMUSG00000064570 ENSMUST00000082636 Gm25800 snoRNA Interval_79845 chr18 35545811 35546018 + 0 NA Intergenic Intergenic -7498 ENSMUSG00000117694.1 ENSMUSG00000117694 ENSMUST00000236097 Snhg4 protein_coding Interval_114020 chr4 62524535 62525587 + 0 NA promoter-TSS (ENSMUSG00000028394.9) protein_coding-promoter-TSS (ENSMUSG00000028394.9) -23 ENSMUSG00000028394.9 ENSMUSG00000028394 ENSMUST00000129930 Pole3 protein_coding Interval_3561 chr1 59603866 59604555 + 0 NA intron (ENSMUSG00000047361.16, intron 2 of 2) protein_coding-intron (ENSMUSG00000047361.16, intron 12 of 19) 21814 ENSMUSG00000047361.16 ENSMUSG00000047361 ENSMUST00000190490 Gm973 protein_coding Interval_60658 chr15 75987774 75988277 + 0 NA Intergenic Intergenic -5583 ENSMUSG00000098176.2 ENSMUSG00000098176 ENSMUST00000182172 Ccdc166 protein_coding Interval_91090 chr2 34970306 34970988 + 0 NA Intergenic Intergenic -5743 ENSMUSG00000083533.2 ENSMUSG00000083533 ENSMUST00000121107 Gm13450 processed_pseudogene Interval_148123 chr7 79369360 79370063 + 0 NA Intergenic Intergenic -16966 ENSMUSG00000089453.1 ENSMUSG00000089453 ENSMUST00000158828 Gm24224 misc_RNA Interval_42808 chr13 19895198 19895397 + 0 NA Intergenic Intergenic -71040 ENSMUSG00000053101.3 ENSMUSG00000053101 ENSMUST00000221268 Gpr141 protein_coding Interval_56766 chr14 121931274 121932399 + 0 NA intron (ENSMUSG00000041765.6, intron 1 of 3) protein_coding-intron (ENSMUSG00000041765.6, intron 4 of 8) -14478 ENSMUSG00000041765.6 ENSMUSG00000041765 ENSMUST00000227936 Ubac2 protein_coding Interval_69356 chr16 92425914 92427755 + 0 NA intron (ENSMUSG00000022951.16, intron 1 of 3) protein_coding-intron (ENSMUSG00000022951.16, intron 1 of 3) -26856 ENSMUSG00000022951.16 ENSMUSG00000022951 ENSMUST00000232457 Rcan1 protein_coding Interval_97642 chr2 141730176 141730713 + 0 NA intron (ENSMUSG00000068205.14, intron 2 of 13) protein_coding-intron (ENSMUSG00000068205.14, intron 7 of 17) 89954 ENSMUSG00000065347.1 ENSMUSG00000065347 ENSMUST00000083413 Gm25583 snRNA Interval_165554 chr9 49427033 49427438 + 0 NA promoter-TSS (ENSMUSG00000032257.6) protein_coding-promoter-TSS (ENSMUSG00000032257.6) -7799 ENSMUSG00000032257.6 ENSMUSG00000032257 ENSMUST00000216227 Ankk1 protein_coding Interval_34194 chr11 121200415 121200643 + 0 NA intron (ENSMUSG00000025169.6, intron 3 of 8) protein_coding-intron (ENSMUSG00000025169.6, intron 3 of 8) 4182 ENSMUSG00000025169.6 ENSMUSG00000025169 ENSMUST00000026169 Ogfod3 protein_coding Interval_140816 chr6 121556539 121557186 + 0 NA Intergenic Intergenic -3339 ENSMUSG00000107752.1 ENSMUSG00000107752 ENSMUST00000205095 Gm43934 processed_pseudogene Interval_133753 chr6 11560252 11560469 + 0 NA Intergenic Intergenic 347123 ENSMUSG00000029632.7 ENSMUSG00000029632 ENSMUST00000204714 Ndufa4 protein_coding Interval_100404 chr2 168851546 168851945 + 0 NA Intergenic Intergenic 30423 ENSMUSG00000077761.1 ENSMUSG00000077761 ENSMUST00000104573 Gm25214 snoRNA Interval_136251 chr6 52273540 52274810 + 0 NA Intergenic Intergenic 7591 ENSMUSG00000098538.1 ENSMUSG00000098538 ENSMUST00000184459 Gm27866 misc_RNA Interval_145164 chr7 30407623 30407826 + 0 NA Intergenic Intergenic -6128 ENSMUSG00000030579.10 ENSMUSG00000030579 ENSMUST00000208125 Tyrobp protein_coding Interval_160575 chr8 110792577 110793470 + 0 NA intron (ENSMUSG00000031750.15, intron 1 of 1) protein_coding-intron (ENSMUSG00000031750.15, intron 1 of 6) -12615 ENSMUSG00000085068.1 ENSMUSG00000085068 ENSMUST00000157018 Gm15895 antisense Interval_49185 chr13 109245245 109245505 + 0 NA intron (ENSMUSG00000021699.17, intron 1 of 14) protein_coding-intron (ENSMUSG00000021699.17, intron 1 of 14) -79369 ENSMUSG00000076946.2 ENSMUSG00000076946 ENSMUST00000103758 Mir582 miRNA Interval_107628 chr3 108986740 108987349 + 0 NA intron (ENSMUSG00000040339.10, intron 5 of 10) protein_coding-intron (ENSMUSG00000040339.10, intron 5 of 10) -12980 ENSMUSG00000106108.1 ENSMUSG00000106108 ENSMUST00000197612 Gm43221 antisense Interval_120807 chr4 150757284 150757836 + 0 NA Intergenic Intergenic -68173 ENSMUSG00000085097.1 ENSMUSG00000085097 ENSMUST00000133196 Gm13049 lincRNA Interval_103917 chr3 54981248 54982147 + 0 NA Intergenic Intergenic -66666 ENSMUSG00000056306.5 ENSMUSG00000056306 ENSMUST00000070342 Sertm1 protein_coding Interval_123025 chr5 28593533 28594578 + 0 NA intron (ENSMUSG00000097726.7, intron 2 of 6) antisense-intron (ENSMUSG00000097726.7, intron 2 of 6) 16782 ENSMUSG00000104587.1 ENSMUSG00000104587 ENSMUST00000197020 Gm43161 TEC Interval_120131 chr4 142828099 142828806 + 0 NA intron (ENSMUSG00000110067.2, intron 2 of 2) protein_coding-intron (ENSMUSG00000110067.2, intron 2 of 2) 37644 ENSMUSG00000103678.1 ENSMUSG00000103678 ENSMUST00000193751 Gm37624 TEC Interval_141412 chr6 128092731 128092924 + 0 NA intron (ENSMUSG00000030352.15, intron 1 of 6) protein_coding-intron (ENSMUSG00000030352.15, intron 1 of 8) 2199 ENSMUSG00000076327.1 ENSMUSG00000076327 ENSMUST00000102372 Gm26338 miRNA Interval_65807 chr16 29021567 29021945 + 0 NA Intergenic Intergenic -70401 ENSMUSG00000116861.1 ENSMUSG00000116861 ENSMUST00000232466 Gm8253 processed_pseudogene Interval_40925 chr12 109931037 109931239 + 0 NA Intergenic Intergenic 19353 ENSMUSG00000112940.1 ENSMUSG00000112940 ENSMUST00000223541 4930511J24Rik lincRNA Interval_54696 chr14 73415415 73415618 + 0 NA Intergenic Intergenic -46392 ENSMUSG00000022108.8 ENSMUSG00000022108 ENSMUST00000228637 Itm2b protein_coding Interval_62961 chr15 98225636 98226875 + 0 NA TTS (ENSMUSG00000059460.7) protein_coding-TTS (ENSMUSG00000059460.7) -5278 ENSMUSG00000108748.1 ENSMUSG00000108748 ENSMUST00000142443 Gm44579 protein_coding Interval_110964 chr4 10911374 10914017 + 0 NA Intergenic Intergenic -33913 ENSMUSG00000081715.1 ENSMUSG00000081715 ENSMUST00000117608 Rps11-ps3 processed_pseudogene Interval_25083 chr11 43752897 43753473 + 0 NA Intergenic Intergenic -5193 ENSMUSG00000041278.10 ENSMUSG00000041278 ENSMUST00000147984 Ttc1 protein_coding Interval_19488 chr10 100128308 100128701 + 0 NA Intergenic Intergenic -10997 ENSMUSG00000096586.1 ENSMUSG00000096586 ENSMUST00000103855 Gm22918 miRNA Interval_82152 chr18 68088044 68088425 + 0 NA intron (ENSMUSG00000024544.9, intron 2 of 5) protein_coding-intron (ENSMUSG00000024544.9, intron 2 of 5) 30140 ENSMUSG00000117891.1 ENSMUSG00000117891 ENSMUST00000236198 Gm41764 antisense Interval_50342 chr14 11934267 11936025 + 0 NA intron (ENSMUSG00000021745.14, intron 2 of 3) protein_coding-intron (ENSMUSG00000021745.14, intron 2 of 29) 30467 ENSMUSG00000114267.1 ENSMUSG00000114267 ENSMUST00000225771 Gm48600 TEC Interval_494 chr1 6407691 6408003 + 0 NA Intergenic Intergenic -24741 ENSMUSG00000102706.1 ENSMUSG00000102706 ENSMUST00000192950 Gm7417 processed_pseudogene Interval_8555 chr1 141883605 141884035 + 0 NA Intergenic Intergenic 337614 ENSMUSG00000103858.1 ENSMUSG00000103858 ENSMUST00000191749 Gm37604 TEC Interval_104540 chr3 67553100 67553688 + 0 NA promoter-TSS (ENSMUSG00000103718.1) lincRNA-promoter-TSS (ENSMUSG00000103718.1) 31 ENSMUSG00000103718.1 ENSMUSG00000103718 ENSMUST00000195865 Gm35299 lincRNA Interval_90051 chr2 27538954 27540806 + 0 NA promoter-TSS (ENSMUSG00000080538.1) snRNA-promoter-TSS (ENSMUSG00000080538.1) 50 ENSMUSG00000080538.1 ENSMUSG00000080538 ENSMUST00000116888 Gm25541 snRNA Interval_111039 chr4 11418005 11418443 + 0 NA Intergenic Intergenic 2540 ENSMUSG00000082255.1 ENSMUSG00000082255 ENSMUST00000119177 Gm11822 processed_pseudogene Interval_104725 chr3 69763637 69764554 + 0 NA Intergenic Intergenic 39859 ENSMUSG00000027787.14 ENSMUSG00000027787 ENSMUST00000150210 Nmd3 protein_coding Interval_138693 chr6 91212516 91213398 + 0 NA intron (ENSMUSG00000064080.12, intron 1 of 16) protein_coding-intron (ENSMUSG00000064080.12, intron 1 of 17) 130 ENSMUSG00000064080.12 ENSMUSG00000064080 ENSMUST00000137029 Fbln2 protein_coding Interval_158640 chr8 84917882 84918481 + 0 NA exon (ENSMUSG00000053693.16, exon 19 of 26) protein_coding-exon (ENSMUSG00000053693.16, exon 19 of 26) 5933 ENSMUSG00000053693.16 ENSMUSG00000053693 ENSMUST00000128356 Mast1 protein_coding Interval_144229 chr7 23362513 23362921 + 0 NA TTS (ENSMUSG00000045693.8) protein_coding-TTS (ENSMUSG00000045693.8) 5592 ENSMUSG00000109325.1 ENSMUSG00000109325 ENSMUST00000208495 Krt8-ps processed_pseudogene Interval_155494 chr8 33902398 33903936 + 0 NA intron (ENSMUSG00000031586.17, intron 1 of 8) protein_coding-intron (ENSMUSG00000031586.17, intron 1 of 7) -17420 ENSMUSG00000098166.1 ENSMUSG00000098166 ENSMUST00000182843 Gm26978 sense_intronic Interval_22079 chr11 6207322 6207514 + 0 NA Intergenic Intergenic 7389 ENSMUSG00000096923.1 ENSMUSG00000096923 ENSMUST00000181545 A730071L15Rik protein_coding Interval_32770 chr11 110438393 110439109 + 0 NA intron (ENSMUSG00000020623.11, intron 1 of 11) protein_coding-intron (ENSMUSG00000020623.11, intron 1 of 11) -38626 ENSMUSG00000020623.11 ENSMUSG00000020623 ENSMUST00000133920 Map2k6 protein_coding Interval_62988 chr15 98516603 98518460 + 0 NA TTS (ENSMUSG00000022992.17) protein_coding-TTS (ENSMUSG00000022992.17) 2322 ENSMUSG00000065336.1 ENSMUSG00000065336 ENSMUST00000083402 Snora34 snoRNA Interval_59161 chr15 45663237 45663869 + 0 NA Intergenic Intergenic -298973 ENSMUSG00000115549.1 ENSMUSG00000115549 ENSMUST00000228018 Gm2203 processed_pseudogene Interval_96274 chr2 121145861 121146703 + 0 NA TTS (ENSMUSG00000027259.15) protein_coding-TTS (ENSMUSG00000027259.15) -5629 ENSMUSG00000074890.4 ENSMUSG00000074890 ENSMUST00000110674 Lcmt2 protein_coding Interval_17088 chr10 71293395 71293696 + 0 NA Intergenic Intergenic 5816 ENSMUSG00000112813.1 ENSMUSG00000112813 ENSMUST00000218529 Gm34376 lincRNA Interval_13172 chr10 12798318 12798976 + 0 NA intron (ENSMUSG00000019820.11, intron 2 of 17) protein_coding-intron (ENSMUSG00000019820.11, intron 1 of 73) -4673 ENSMUSG00000088516.1 ENSMUSG00000088516 ENSMUST00000157891 Gm23044 snRNA Interval_164710 chr9 40750131 40750749 + 0 NA intron (ENSMUSG00000111189.1, intron 2 of 2) protein_coding-intron (ENSMUSG00000032024.10, intron 1 of 6) 11815 ENSMUSG00000111189.1 ENSMUSG00000111189 ENSMUST00000216792 Gm48293 antisense Interval_169421 chr9 97110588 97111757 + 0 NA promoter-TSS (ENSMUSG00000032449.13) protein_coding-promoter-TSS (ENSMUSG00000032449.13) -21145 ENSMUSG00000032449.13 ENSMUSG00000032449 ENSMUST00000152632 Slc25a36 protein_coding Interval_2504 chr1 39839582 39840966 + 0 NA intron (ENSMUSG00000101634.6, intron 3 of 3) lincRNA-intron (ENSMUSG00000101634.6, intron 3 of 3) 7056 ENSMUSG00000101634.6 ENSMUSG00000101634 ENSMUST00000186683 1700066B17Rik lincRNA Interval_105897 chr3 89966964 89967185 + 0 NA TTS (ENSMUSG00000065045.1) snRNA-TTS (ENSMUSG00000065045.1) 1089 ENSMUSG00000065045.1 ENSMUSG00000065045 ENSMUST00000083111 Gm24046 snRNA Interval_109427 chr3 142281920 142283113 + 0 NA intron (ENSMUSG00000028273.15, intron 6 of 12) protein_coding-intron (ENSMUSG00000028273.15, intron 7 of 12) 21463 ENSMUSG00000028273.15 ENSMUSG00000028273 ENSMUST00000058626 Pdlim5 protein_coding Interval_94436 chr2 91216931 91217222 + 0 NA exon (ENSMUSG00000002109.14, exon 6 of 10) protein_coding-exon (ENSMUSG00000002109.14, exon 6 of 10) 14164 ENSMUSG00000002103.16 ENSMUSG00000002103 ENSMUST00000127643 Acp2 protein_coding Interval_91539 chr2 41734573 41734801 + 0 NA intron (ENSMUSG00000049252.17, intron 2 of 62) protein_coding-intron (ENSMUSG00000049252.17, intron 5 of 90) 254142 ENSMUSG00000081999.3 ENSMUSG00000081999 ENSMUST00000120980 Gm13461 processed_pseudogene Interval_115735 chr4 103156355 103156634 + 0 NA intron (ENSMUSG00000028522.16, intron 13 of 14) protein_coding-intron (ENSMUSG00000028522.16, intron 12 of 13) 37104 ENSMUSG00000028522.16 ENSMUSG00000028522 ENSMUST00000128536 Mier1 protein_coding Interval_88778 chr2 10600349 10601593 + 0 NA Intergenic Intergenic 82816 ENSMUSG00000080594.1 ENSMUSG00000080594 ENSMUST00000116944 Mir669h miRNA Interval_164902 chr9 42980537 42981236 + 0 NA intron (ENSMUSG00000059495.14, intron 30 of 40) protein_coding-intron (ENSMUSG00000059495.14, intron 30 of 41) 16014 ENSMUSG00000111133.1 ENSMUSG00000111133 ENSMUST00000216016 Gm5831 processed_pseudogene Interval_97978 chr2 146337446 146338004 + 0 NA intron (ENSMUSG00000037110.20, intron 35 of 41) protein_coding-intron (ENSMUSG00000037110.20, intron 34 of 40) 32178 ENSMUSG00000042938.8 ENSMUSG00000042938 ENSMUST00000122417 Gm14117 processed_pseudogene Interval_21383 chr10 128290340 128290663 + 0 NA intron (ENSMUSG00000040033.16, intron 3 of 3) protein_coding-intron (ENSMUSG00000040033.16, intron 22 of 23) 6394 ENSMUSG00000040033.16 ENSMUSG00000040033 ENSMUST00000220277 Stat2 protein_coding Interval_57677 chr15 15031609 15031818 + 0 NA Intergenic Intergenic -106474 ENSMUSG00000115208.1 ENSMUSG00000115208 ENSMUST00000226940 Gm49118 processed_pseudogene Interval_36585 chr12 50974264 50975786 + 0 NA Intergenic Intergenic 29848 ENSMUSG00000112685.1 ENSMUSG00000112685 ENSMUST00000218991 Gm40421 lincRNA Interval_2447 chr1 39424062 39424750 + 0 NA intron (ENSMUSG00000003134.10, intron 2 of 18) protein_coding-intron (ENSMUSG00000003134.10, intron 2 of 19) -4474 ENSMUSG00000102607.1 ENSMUSG00000102607 ENSMUST00000191698 Gm37265 TEC Interval_81056 chr18 53372287 53372836 + 0 NA intron (ENSMUSG00000024535.16, intron 3 of 6) protein_coding-intron (ENSMUSG00000024535.16, intron 3 of 7) 45554 ENSMUSG00000024538.8 ENSMUSG00000024538 ENSMUST00000025419 Ppic protein_coding Interval_63957 chr16 4818114 4819469 + 0 NA Intergenic Intergenic -28856 ENSMUSG00000004071.13 ENSMUSG00000004071 ENSMUST00000229452 Cdip1 protein_coding Interval_41637 chr12 117260890 117261883 + 0 NA intron (ENSMUSG00000101930.1, intron 1 of 2) protein_coding-intron (ENSMUSG00000056553.14, intron 21 of 22) 10569 ENSMUSG00000065538.1 ENSMUSG00000065538 ENSMUST00000083604 Mir153 miRNA Interval_42323 chr13 12094659 12094998 + 0 NA intron (ENSMUSG00000021313.16, intron 1 of 2) protein_coding-intron (ENSMUSG00000021313.16, intron 1 of 104) -42773 ENSMUSG00000112947.1 ENSMUSG00000112947 ENSMUST00000220599 Gm47493 TEC Interval_82380 chr18 73537453 73538292 + 0 NA Intergenic Intergenic -4322 ENSMUSG00000065922.1 ENSMUSG00000065922 ENSMUST00000083988 n-R5-8s1 rRNA Interval_43985 chr13 38768618 38769842 + 0 NA intron (ENSMUSG00000114767.1, intron 3 of 3) lincRNA-intron (ENSMUSG00000114767.1, intron 3 of 3) -6594 ENSMUSG00000114845.1 ENSMUSG00000114845 ENSMUST00000224482 Gm47511 lincRNA Interval_150012 chr7 104711785 104713275 + 0 NA Intergenic Intergenic 8961 ENSMUSG00000109806.1 ENSMUSG00000109806 ENSMUST00000209914 Olfr663 polymorphic_pseudogene Interval_63702 chr15 102939477 102940335 + 0 NA Intergenic Intergenic 3149 ENSMUSG00000050328.2 ENSMUSG00000050328 ENSMUST00000055562 Hoxc12 protein_coding Interval_50708 chr14 18402515 18402779 + 0 NA Intergenic Intergenic -43228 ENSMUSG00000065858.1 ENSMUSG00000065858 ENSMUST00000083924 Gm22350 snRNA Interval_83500 chr18 88006022 88006388 + 0 NA Intergenic Intergenic -80641 ENSMUSG00000077641.1 ENSMUSG00000077641 ENSMUST00000104453 Gm24987 snoRNA Interval_141932 chr6 135526544 135528034 + 0 NA Intergenic Intergenic -56903 ENSMUSG00000065187.1 ENSMUSG00000065187 ENSMUST00000083253 Gm25136 snoRNA Interval_90091 chr2 27899882 27900670 + 0 NA intron (ENSMUSG00000026837.16, intron 1 of 65) protein_coding-intron (ENSMUSG00000026837.16, intron 1 of 65) -13224 ENSMUSG00000085766.1 ENSMUSG00000085766 ENSMUST00000154246 2810430I11Rik processed_transcript Interval_308 chr1 3460506 3460706 + 0 NA intron (ENSMUSG00000051951.5, intron 1 of 2) protein_coding-intron (ENSMUSG00000051951.5, intron 1 of 2) -5981 ENSMUSG00000089699.1 ENSMUSG00000089699 ENSMUST00000161581 Gm1992 antisense Interval_12971 chr10 8831951 8834374 + 0 NA intron (ENSMUSG00000015305.6, intron 2 of 3) protein_coding-intron (ENSMUSG00000015305.6, intron 2 of 19) -9015 ENSMUSG00000065692.1 ENSMUSG00000065692 ENSMUST00000083758 Gm25410 snoRNA Interval_137917 chr6 83348750 83350056 + 0 NA promoter-TSS (ENSMUSG00000045160.14) protein_coding-promoter-TSS (ENSMUSG00000045160.14) -1637 ENSMUSG00000045160.14 ENSMUSG00000045160 ENSMUST00000148875 Bola3 protein_coding Interval_36560 chr12 49732922 49733691 + 0 NA Intergenic Intergenic 43469 ENSMUSG00000112605.1 ENSMUSG00000112605 ENSMUST00000220112 Gm7476 processed_pseudogene Interval_170940 chr9 112688192 112688528 + 0 NA Intergenic Intergenic 165831 ENSMUSG00000096353.1 ENSMUSG00000096353 ENSMUST00000179604 Gm24957 snoRNA Interval_54620 chr14 72293684 72294215 + 0 NA Intergenic Intergenic -98253 ENSMUSG00000115061.1 ENSMUSG00000115061 ENSMUST00000228357 Gm49290 processed_pseudogene Interval_48625 chr13 100711552 100712404 + 0 NA promoter-TSS (ENSMUSG00000069089.8) protein_coding-promoter-TSS (ENSMUSG00000069089.8) 18922 ENSMUSG00000069089.8 ENSMUSG00000069089 ENSMUST00000225578 Cdk7 protein_coding Interval_148147 chr7 79490937 79491491 + 0 NA Intergenic Intergenic -8824 ENSMUSG00000097023.8 ENSMUSG00000097023 ENSMUST00000182125 Mir9-3hg lincRNA Interval_79478 chr18 32200959 32201202 + 0 NA intron (ENSMUSG00000024383.9, intron 5 of 6) protein_coding-intron (ENSMUSG00000024383.9, intron 5 of 16) 37987 ENSMUSG00000024383.9 ENSMUSG00000024383 ENSMUST00000096575 Map3k2 protein_coding Interval_42444 chr13 13604472 13604670 + 0 NA intron (ENSMUSG00000019726.12, intron 1 of 4) protein_coding-intron (ENSMUSG00000019726.12, intron 1 of 52) -79520 ENSMUSG00000019726.12 ENSMUSG00000019726 ENSMUST00000221587 Lyst protein_coding Interval_107681 chr3 110325736 110326641 + 0 NA Intergenic Intergenic -48716 ENSMUSG00000104944.1 ENSMUSG00000104944 ENSMUST00000198642 Gm43405 processed_pseudogene Interval_23170 chr11 20304010 20305621 + 0 NA intron (ENSMUSG00000020142.12, intron 7 of 7) protein_coding-intron (ENSMUSG00000020142.12, intron 7 of 7) -14432 ENSMUSG00000083792.1 ENSMUSG00000083792 ENSMUST00000121298 Rpl12-ps2 processed_pseudogene Interval_125803 chr5 74283686 74284001 + 0 NA intron (ENSMUSG00000062110.14, intron 5 of 7) protein_coding-intron (ENSMUSG00000062110.14, intron 5 of 8) 4767 ENSMUSG00000062110.14 ENSMUSG00000062110 ENSMUST00000123203 Scfd2 protein_coding Interval_83586 chr18 90269994 90271289 + 0 NA Intergenic Intergenic 41549 ENSMUSG00000091697.2 ENSMUSG00000091697 ENSMUST00000163304 Eif3s6-ps2 processed_pseudogene Interval_72883 chr17 32905321 32905919 + 0 NA exon (ENSMUSG00000024292.15, exon 12 of 12) protein_coding-exon (ENSMUSG00000024292.15, exon 12 of 12) 11708 ENSMUSG00000024292.15 ENSMUSG00000024292 ENSMUST00000234797 Cyp4f14 protein_coding Interval_173452 chrX 93999950 94000366 + 0 NA Intergenic Intergenic -11339 ENSMUSG00000080995.1 ENSMUSG00000080995 ENSMUST00000118140 Gm15165 processed_pseudogene Interval_88893 chr2 12216239 12216514 + 0 NA intron (ENSMUSG00000026768.10, intron 13 of 30) protein_coding-intron (ENSMUSG00000026768.10, intron 13 of 29) -84943 ENSMUSG00000086843.3 ENSMUSG00000086843 ENSMUST00000150037 E030013I19Rik antisense Interval_126844 chr5 94334227 94334430 + 0 NA Intergenic Intergenic 19859 ENSMUSG00000095718.2 ENSMUSG00000095718 ENSMUST00000097478 Gm6502 protein_coding Interval_43876 chr13 37784526 37784831 + 0 NA intron (ENSMUSG00000039087.17, intron 1 of 3) protein_coding-intron (ENSMUSG00000039087.17, intron 1 of 3) 15112 ENSMUSG00000114370.1 ENSMUSG00000114370 ENSMUST00000224624 Gm46411 antisense Interval_72438 chr17 29808332 29808668 + 0 NA Intergenic Intergenic 10887 ENSMUSG00000117489.1 ENSMUSG00000117489 ENSMUST00000234919 Gm50016 lincRNA Interval_90288 chr2 29573360 29574414 + 0 NA Intergenic Intergenic -69928 ENSMUSG00000039844.20 ENSMUSG00000039844 ENSMUST00000123953 Rapgef1 protein_coding Interval_19111 chr10 94662836 94663158 + 0 NA Intergenic Intergenic -9945 ENSMUSG00000112473.1 ENSMUSG00000112473 ENSMUST00000218051 Gm48658 processed_pseudogene Interval_16555 chr10 63605087 63605377 + 0 NA intron (ENSMUSG00000060843.11, intron 5 of 17) protein_coding-intron (ENSMUSG00000060843.11, intron 4 of 16) -183443 ENSMUSG00000048185.5 ENSMUSG00000048185 ENSMUST00000054760 Gm7075 protein_coding Interval_17554 chr10 77696394 77697479 + 0 NA exon (ENSMUSG00000112170.1, exon 1 of 1) protein_coding-exon (ENSMUSG00000112170.1, exon 1 of 1) 297 ENSMUSG00000112170.1 ENSMUSG00000112170 ENSMUST00000220084 Gm9508 protein_coding Interval_143144 chr7 3653142 3653508 + 0 NA exon (ENSMUSG00000035632.16, exon 8 of 18) protein_coding-exon (ENSMUSG00000035632.16, exon 8 of 18) -2637 ENSMUSG00000093290.1 ENSMUSG00000093290 ENSMUST00000175549 Mir3572 miRNA Interval_110697 chr4 6547131 6547347 + 0 NA Intergenic Intergenic 7678 ENSMUSG00000081388.1 ENSMUSG00000081388 ENSMUST00000117807 Gm11801 processed_pseudogene Interval_86533 chr19 41514769 41515032 + 0 NA intron (ENSMUSG00000025019.17, intron 2 of 7) protein_coding-intron (ENSMUSG00000025019.17, intron 2 of 7) 55087 ENSMUSG00000044065.3 ENSMUSG00000044065 ENSMUST00000057038 Gm9788 processed_pseudogene Interval_171876 chr9 121947392 121947715 + 0 NA TTS (ENSMUSG00000043773.5) lincRNA-TTS (ENSMUSG00000043773.5) -3482 ENSMUSG00000038233.10 ENSMUSG00000038233 ENSMUST00000213773 Gask1a protein_coding Interval_1827 chr1 34041035 34041597 + 0 NA intron (ENSMUSG00000026131.20, intron 1 of 97) protein_coding-intron (ENSMUSG00000026131.20, intron 1 of 97) 9216 ENSMUSG00000103364.1 ENSMUSG00000103364 ENSMUST00000194178 Gm38157 TEC Interval_159586 chr8 95632891 95634153 + 0 NA promoter-TSS (ENSMUSG00000031669.10) protein_coding-promoter-TSS (ENSMUSG00000031669.10) -32 ENSMUSG00000031669.10 ENSMUSG00000031669 ENSMUST00000212434 Gins3 protein_coding Interval_7755 chr1 133452041 133452812 + 0 NA Intergenic Intergenic -28049 ENSMUSG00000070643.11 ENSMUSG00000070643 ENSMUST00000126530 Sox13 protein_coding Interval_145769 chr7 38173631 38175067 + 0 NA Intergenic Intergenic 2322 ENSMUSG00000089230.1 ENSMUSG00000089230 ENSMUST00000158605 Gm22203 snRNA Interval_37985 chr12 73599743 73601053 + 0 NA intron (ENSMUSG00000021108.18, intron 2 of 14) protein_coding-intron (ENSMUSG00000021108.18, intron 1 of 13) 15602 ENSMUSG00000021108.18 ENSMUSG00000021108 ENSMUST00000220898 Prkch protein_coding Interval_10946 chr1 177441274 177443169 + 0 NA promoter-TSS (ENSMUSG00000063659.11) protein_coding-promoter-TSS (ENSMUSG00000063659.11) -2717 ENSMUSG00000063659.11 ENSMUSG00000063659 ENSMUST00000077225 Zbtb18 protein_coding Interval_90146 chr2 28523749 28523995 + 0 NA intron (ENSMUSG00000026821.16, intron 1 of 3) protein_coding-intron (ENSMUSG00000026821.16, intron 1 of 17) -3978 ENSMUSG00000026821.16 ENSMUSG00000026821 ENSMUST00000140704 Ralgds protein_coding Interval_116540 chr4 115200461 115201139 + 0 NA Intergenic Intergenic -17816 ENSMUSG00000118615.1 ENSMUSG00000118615 ENSMUST00000239272 AL645473.1 unprocessed_pseudogene Interval_79928 chr18 35991731 35992605 + 0 NA intron (ENSMUSG00000024347.16, intron 7 of 14) protein_coding-intron (ENSMUSG00000024347.16, intron 7 of 14) 27101 ENSMUSG00000024347.16 ENSMUSG00000024347 ENSMUST00000175720 Psd2 protein_coding Interval_89464 chr2 20807955 20808154 + 0 NA exon (ENSMUSG00000036617.17, exon 13 of 13) protein_coding-exon (ENSMUSG00000036617.17, exon 13 of 13) 51742 ENSMUSG00000036591.16 ENSMUSG00000036591 ENSMUST00000173654 Arhgap21 protein_coding Interval_88312 chr2 3593447 3593654 + 0 NA intron (ENSMUSG00000026655.15, intron 1 of 4) protein_coding-intron (ENSMUSG00000026655.15, intron 1 of 4) 23062 ENSMUSG00000026655.15 ENSMUSG00000026655 ENSMUST00000176254 Fam107b protein_coding Interval_100520 chr2 169859329 169859850 + 0 NA intron (ENSMUSG00000047907.11, intron 1 of 2) protein_coding-intron (ENSMUSG00000047907.11, intron 1 of 1) -25304 ENSMUSG00000047907.11 ENSMUSG00000047907 ENSMUST00000140699 Tshz2 protein_coding Interval_144012 chr7 18963480 18963954 + 0 NA exon (ENSMUSG00000030411.16, exon 4 of 4) protein_coding-exon (ENSMUSG00000030411.16, exon 4 of 4) -23683 ENSMUSG00000051965.8 ENSMUSG00000051965 ENSMUST00000063563 Nanos2 protein_coding Interval_51254 chr14 25565650 25566039 + 0 NA intron (ENSMUSG00000007817.15, intron 3 of 3) protein_coding-intron (ENSMUSG00000007817.15, intron 3 of 23) 31405 ENSMUSG00000093081.1 ENSMUSG00000093081 ENSMUST00000175340 Mir3075 miRNA Interval_29273 chr11 82576236 82576477 + 0 NA Intergenic Intergenic 19823 ENSMUSG00000065201.1 ENSMUSG00000065201 ENSMUST00000083267 Gm24612 snRNA Interval_139671 chr6 106593312 106594491 + 0 NA intron (ENSMUSG00000064293.14, intron 4 of 15) protein_coding-intron (ENSMUSG00000064293.14, intron 11 of 15) -61602 ENSMUSG00000064293.14 ENSMUSG00000064293 ENSMUST00000142626 Cntn4 protein_coding Interval_46137 chr13 61956680 61956884 + 0 NA Intergenic Intergenic 39233 ENSMUSG00000113887.1 ENSMUSG00000113887 ENSMUST00000222548 Gm35619 processed_pseudogene Interval_24736 chr11 36458701 36458975 + 0 NA intron (ENSMUSG00000049336.16, intron 2 of 28) protein_coding-intron (ENSMUSG00000049336.16, intron 2 of 28) 180797 ENSMUSG00000086375.1 ENSMUSG00000086375 ENSMUST00000123278 Gm12127 antisense Interval_123521 chr5 33139926 33140172 + 0 NA TTS (ENSMUSG00000081618.2) transcribed_processed_pseudogene-TTS (ENSMUSG00000081618.2) 2061 ENSMUSG00000081618.2 ENSMUSG00000081618 ENSMUST00000117311 5033423K11Rik transcribed_processed_pseudogene Interval_66691 chr16 36198990 36199803 + 0 NA Intergenic Intergenic -1267 ENSMUSG00000116872.1 ENSMUSG00000116872 ENSMUST00000232565 Gm6815 transcribed_unprocessed_pseudogene Interval_110951 chr4 10792240 10792828 + 0 NA intron (ENSMUSG00000086080.7, intron 1 of 5) lincRNA-intron (ENSMUSG00000086080.7, intron 1 of 2) 5277 ENSMUSG00000086080.7 ENSMUSG00000086080 ENSMUST00000141312 1700123O12Rik lincRNA Interval_13282 chr10 14074606 14076335 + 0 NA intron (ENSMUSG00000015501.10, intron 3 of 4) protein_coding-intron (ENSMUSG00000015501.10, intron 2 of 8) 78976 ENSMUSG00000101014.1 ENSMUSG00000101014 ENSMUST00000189331 Gm28289 antisense Interval_135490 chr6 39601778 39602238 + 0 NA exon (ENSMUSG00000002416.13, exon 4 of 4) protein_coding-exon (ENSMUSG00000002416.13, exon 4 of 4) -9224 ENSMUSG00000086582.1 ENSMUSG00000086582 ENSMUST00000128218 Gm16272 antisense Interval_34993 chr12 16523893 16524153 + 0 NA Intergenic Intergenic 86943 ENSMUSG00000020593.16 ENSMUSG00000020593 ENSMUST00000221146 Lpin1 protein_coding Interval_168605 chr9 84103284 84103784 + 0 NA intron (ENSMUSG00000032263.14, intron 9 of 10) protein_coding-intron (ENSMUSG00000032263.14, intron 9 of 10) -78717 ENSMUSG00000111757.1 ENSMUSG00000111757 ENSMUST00000215223 Gm46124 antisense Interval_162402 chr8 128054267 128055181 + 0 NA Intergenic Intergenic 223501 ENSMUSG00000099326.1 ENSMUSG00000099326 ENSMUST00000184910 Mir21c miRNA Interval_117874 chr4 126810632 126811000 + 0 NA intron (ENSMUSG00000028830.14, intron 3 of 23) protein_coding-intron (ENSMUSG00000028830.14, intron 3 of 20) 7329 ENSMUSG00000077780.1 ENSMUSG00000077780 ENSMUST00000104592 Gm24161 snoRNA Interval_32584 chr11 108897630 108898802 + 0 NA Intergenic Intergenic -23120 ENSMUSG00000000142.15 ENSMUSG00000000142 ENSMUST00000139682 Axin2 protein_coding Interval_19142 chr10 95072620 95072909 + 0 NA Intergenic Intergenic -43615 ENSMUSG00000112677.1 ENSMUSG00000112677 ENSMUST00000219913 Gm48868 TEC Interval_12611 chr10 3900971 3901964 + 0 NA intron (ENSMUSG00000040624.18, intron 2 of 15) protein_coding-intron (ENSMUSG00000040624.18, intron 2 of 15) -31860 ENSMUSG00000082123.1 ENSMUSG00000082123 ENSMUST00000117631 Gm16149 processed_pseudogene Interval_79321 chr18 30478123 30478347 + 0 NA Intergenic Intergenic 1828 ENSMUSG00000088126.1 ENSMUSG00000088126 ENSMUST00000157501 Gm22870 snoRNA Interval_119010 chr4 134984563 134984806 + 0 NA Intergenic Intergenic 53782 ENSMUSG00000028821.8 ENSMUSG00000028821 ENSMUST00000144037 Syf2 protein_coding Interval_93730 chr2 76264425 76265039 + 0 NA intron (ENSMUSG00000075270.11, intron 2 of 19) protein_coding-intron (ENSMUSG00000075270.11, intron 2 of 19) -49338 ENSMUSG00000075270.11 ENSMUSG00000075270 ENSMUST00000144892 Pde11a protein_coding Interval_32338 chr11 107048730 107050079 + 0 NA intron (ENSMUSG00000040481.17, intron 1 of 1) protein_coding-intron (ENSMUSG00000040481.17, intron 23 of 27) -2061 ENSMUSG00000040481.17 ENSMUSG00000040481 ENSMUST00000149486 Bptf protein_coding Interval_138497 chr6 88736688 88737790 + 0 NA promoter-TSS (ENSMUSG00000107624.1) TEC-promoter-TSS (ENSMUSG00000107624.1) -953 ENSMUSG00000107624.1 ENSMUSG00000107624 ENSMUST00000203186 Gm44005 TEC Interval_21187 chr10 127120696 127121409 + 0 NA promoter-TSS (ENSMUSG00000040462.13) protein_coding-promoter-TSS (ENSMUSG00000040462.13) 63 ENSMUSG00000040462.13 ENSMUSG00000040462 ENSMUST00000218798 Os9 protein_coding Interval_11253 chr1 180482962 180484253 + 0 NA promoter-TSS (ENSMUSG00000053963.7) protein_coding-promoter-TSS (ENSMUSG00000053963.7) -6520 ENSMUSG00000104210.1 ENSMUSG00000104210 ENSMUST00000191641 Gm37984 TEC Interval_164726 chr9 40825470 40825843 + 0 NA Intergenic Intergenic 4687 ENSMUSG00000110982.1 ENSMUSG00000110982 ENSMUST00000215895 Gm48565 TEC Interval_99942 chr2 166027286 166028181 + 0 NA intron (ENSMUSG00000027678.17, intron 1 of 22) protein_coding-intron (ENSMUSG00000027678.17, intron 1 of 22) -20185 ENSMUSG00000027678.17 ENSMUSG00000027678 ENSMUST00000139394 Ncoa3 protein_coding Interval_76431 chr17 80153156 80154305 + 0 NA intron (ENSMUSG00000035473.10, intron 2 of 3) protein_coding-intron (ENSMUSG00000035473.10, intron 4 of 6) 8578 ENSMUSG00000035473.10 ENSMUSG00000035473 ENSMUST00000133955 Galm protein_coding Interval_86031 chr19 35100981 35101639 + 0 NA Intergenic Intergenic -28218 ENSMUSG00000117973.1 ENSMUSG00000117973 ENSMUST00000238087 Gm50140 lincRNA Interval_47267 chr13 80190817 80191044 + 0 NA Intergenic Intergenic 29602 ENSMUSG00000114462.1 ENSMUSG00000114462 ENSMUST00000226097 Gm8371 processed_pseudogene Interval_26793 chr11 60520193 60520414 + 0 NA intron (ENSMUSG00000042678.17, intron 11 of 11) protein_coding-intron (ENSMUSG00000042678.17, intron 60 of 65) -16078 ENSMUSG00000042650.3 ENSMUSG00000042650 ENSMUST00000044250 Alkbh5 protein_coding Interval_12213 chr1 190881223 190881669 + 0 NA intron (ENSMUSG00000089872.10, intron 2 of 8) protein_coding-intron (ENSMUSG00000089872.10, intron 5 of 14) 18271 ENSMUSG00000089872.10 ENSMUSG00000089872 ENSMUST00000159066 Rps6kc1 protein_coding Interval_20181 chr10 115468657 115469500 + 0 NA intron (ENSMUSG00000020140.15, intron 7 of 16) protein_coding-intron (ENSMUSG00000020140.15, intron 8 of 17) 40571 ENSMUSG00000034163.10 ENSMUSG00000034163 ENSMUST00000141246 Zfc3h1 protein_coding Interval_163823 chr9 26916759 26917531 + 0 NA intron (ENSMUSG00000079644.2, intron 3 of 20) protein_coding-intron (ENSMUSG00000079644.2, intron 3 of 20) 5936 ENSMUSG00000079644.2 ENSMUSG00000079644 ENSMUST00000214461 Gm1110 protein_coding Interval_63535 chr15 101853885 101854793 + 0 NA Intergenic Intergenic -5378 ENSMUSG00000046834.7 ENSMUSG00000046834 ENSMUST00000230798 Krt1 protein_coding Interval_157752 chr8 72740663 72741374 + 0 NA promoter-TSS (ENSMUSG00000031622.16) protein_coding-promoter-TSS (ENSMUSG00000031622.16) 167 ENSMUSG00000031622.16 ENSMUSG00000031622 ENSMUST00000212677 Sin3b protein_coding Interval_47299 chr13 80874168 80875643 + 0 NA Intergenic Intergenic 10619 ENSMUSG00000089827.1 ENSMUSG00000089827 ENSMUST00000161006 1700023H06Rik processed_transcript Interval_14900 chr10 40947197 40947702 + 0 NA Intergenic Intergenic 63622 ENSMUSG00000019831.14 ENSMUSG00000019831 ENSMUST00000105509 Wasf1 protein_coding Interval_31838 chr11 103246520 103247233 + 0 NA intron (ENSMUSG00000020941.7, intron 1 of 15) protein_coding-intron (ENSMUSG00000020941.7, intron 1 of 15) -6742 ENSMUSG00000020941.7 ENSMUSG00000020941 ENSMUST00000152677 Map3k14 protein_coding Interval_173050 chrX 68594900 68595761 + 0 NA Intergenic Intergenic -18463 ENSMUSG00000082162.1 ENSMUSG00000082162 ENSMUST00000117156 Gm14701 processed_pseudogene Interval_70253 chr17 7261691 7262491 + 0 NA intron (ENSMUSG00000023809.10, intron 2 of 3) protein_coding-intron (ENSMUSG00000023809.10, intron 9 of 20) 53755 ENSMUSG00000116935.1 ENSMUSG00000116935 ENSMUST00000231254 Gpr31a processed_pseudogene Interval_121544 chr5 3341199 3345498 + 0 NA promoter-TSS (ENSMUSG00000040274.11) protein_coding-promoter-TSS (ENSMUSG00000040274.11) 73029 ENSMUSG00000106658.1 ENSMUSG00000106658 ENSMUST00000197473 Gm36548 lincRNA Interval_93090 chr2 70037398 70037679 + 0 NA Intergenic Intergenic -1373 ENSMUSG00000086132.1 ENSMUSG00000086132 ENSMUST00000140978 Gm13631 processed_transcript Interval_137039 chr6 66903112 66904512 + 0 NA intron (ENSMUSG00000036402.13, intron 1 of 3) protein_coding-intron (ENSMUSG00000036402.13, intron 1 of 4) 6921 ENSMUSG00000036402.13 ENSMUSG00000036402 ENSMUST00000204862 Gng12 protein_coding Interval_54559 chr14 70674504 70674809 + 0 NA exon (ENSMUSG00000115387.1, exon 1 of 1) processed_pseudogene-exon (ENSMUSG00000115387.1, exon 1 of 1) 206 ENSMUSG00000115387.1 ENSMUSG00000115387 ENSMUST00000228317 Gm49244 processed_pseudogene Interval_21173 chr10 127037481 127038073 + 0 NA intron (ENSMUSG00000080115.3, intron 2 of 2) protein_coding-intron (ENSMUSG00000080115.3, intron 2 of 2) -3637 ENSMUSG00000006732.14 ENSMUSG00000006732 ENSMUST00000139486 Mettl1 protein_coding Interval_1791 chr1 33802814 33803020 + 0 NA exon (ENSMUSG00000042197.13, exon 4 of 4) protein_coding-exon (ENSMUSG00000042197.13, exon 4 of 4) 11509 ENSMUSG00000042197.13 ENSMUSG00000042197 ENSMUST00000125723 Zfp451 protein_coding Interval_136441 chr6 54508647 54508901 + 0 NA TTS (ENSMUSG00000019124.10) protein_coding-TTS (ENSMUSG00000019124.10) 587 ENSMUSG00000019124.10 ENSMUSG00000019124 ENSMUST00000140235 Scrn1 protein_coding Interval_134131 chr6 21393474 21394950 + 0 NA intron (ENSMUSG00000060882.5, intron 1 of 5) protein_coding-intron (ENSMUSG00000060882.5, intron 1 of 5) -97449 ENSMUSG00000107097.1 ENSMUSG00000107097 ENSMUST00000201404 Gm42584 processed_pseudogene Interval_129022 chr5 116809147 116810049 + 0 NA intron (ENSMUSG00000106909.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000106909.1, intron 1 of 2) -1633 ENSMUSG00000107237.1 ENSMUSG00000107237 ENSMUST00000201443 Gm29926 lincRNA Interval_152064 chr7 128724672 128725792 + 0 NA intron (ENSMUSG00000048170.14, intron 1 of 16) protein_coding-intron (ENSMUSG00000048170.14, intron 1 of 15) -3162 ENSMUSG00000108648.1 ENSMUSG00000108648 ENSMUST00000206159 Gm44674 antisense Interval_14718 chr10 39328414 39328673 + 0 NA Intergenic Intergenic -5126 ENSMUSG00000111183.1 ENSMUSG00000111183 ENSMUST00000215530 Gm48486 lincRNA Interval_115888 chr4 105770196 105770395 + 0 NA Intergenic Intergenic -20239 ENSMUSG00000083780.8 ENSMUSG00000083780 ENSMUST00000119740 Gm12728 protein_coding Interval_115362 chr4 98108735 98109745 + 0 NA intron (ENSMUSG00000028565.18, intron 6 of 6) protein_coding-intron (ENSMUSG00000028565.18, intron 9 of 9) 41021 ENSMUSG00000081096.2 ENSMUSG00000081096 ENSMUST00000120186 Gm12691 transcribed_processed_pseudogene Interval_136444 chr6 54548500 54549462 + 0 NA intron (ENSMUSG00000019124.10, intron 1 of 7) protein_coding-intron (ENSMUSG00000019124.10, intron 1 of 7) -39620 ENSMUSG00000019124.10 ENSMUSG00000019124 ENSMUST00000140235 Scrn1 protein_coding Interval_67933 chr16 59666880 59667790 + 0 NA intron (ENSMUSG00000055540.15, intron 15 of 17) protein_coding-intron (ENSMUSG00000055540.15, intron 15 of 17) 28126 ENSMUSG00000116894.1 ENSMUSG00000116894 ENSMUST00000232302 4930547E14Rik processed_transcript Interval_95688 chr2 114174772 114175484 + 0 NA exon (ENSMUSG00000040383.16, exon 1 of 35) protein_coding-exon (ENSMUSG00000040383.16, exon 1 of 35) 11896 ENSMUSG00000040383.16 ENSMUSG00000040383 ENSMUST00000154317 Aqr protein_coding Interval_154732 chr8 22913122 22913538 + 0 NA promoter-TSS (ENSMUSG00000031540.14) protein_coding-promoter-TSS (ENSMUSG00000031540.14) 39741 ENSMUSG00000109652.1 ENSMUSG00000109652 ENSMUST00000210028 Gm45555 TEC Interval_57935 chr15 25621387 25623308 + 0 NA promoter-TSS (ENSMUSG00000022272.17) protein_coding-promoter-TSS (ENSMUSG00000022272.17) -12280 ENSMUSG00000115252.1 ENSMUSG00000115252 ENSMUST00000228949 Gm48996 TEC Interval_151035 chr7 118068118 118068397 + 0 NA Intergenic Intergenic 46999 ENSMUSG00000008683.16 ENSMUSG00000008683 ENSMUST00000128482 Rps15a protein_coding Interval_141860 chr6 134970866 134971440 + 0 NA Intergenic Intergenic -10565 ENSMUSG00000090698.2 ENSMUSG00000090698 ENSMUST00000167323 Apold1 protein_coding Interval_50783 chr14 19821781 19822026 + 0 NA intron (ENSMUSG00000021807.6, intron 1 of 1) protein_coding-intron (ENSMUSG00000021807.6, intron 2 of 7) 1152 ENSMUSG00000021807.6 ENSMUSG00000021807 ENSMUST00000225615 Rtraf protein_coding Interval_122683 chr5 24637981 24638978 + 0 NA Intergenic Intergenic -6974 ENSMUSG00000038165.8 ENSMUSG00000038165 ENSMUST00000182745 1700022A21Rik transcribed_processed_pseudogene Interval_76295 chr17 78834913 78836104 + 0 NA promoter-TSS (ENSMUSG00000039414.10) protein_coding-promoter-TSS (ENSMUSG00000039414.10) -8086 ENSMUSG00000050668.10 ENSMUSG00000050668 ENSMUST00000233913 Gpatch11 protein_coding Interval_88071 chr19 58818089 58819615 + 0 NA TTS (ENSMUSG00000025092.7) protein_coding-TTS (ENSMUSG00000025092.7) 3269 ENSMUSG00000025092.7 ENSMUSG00000025092 ENSMUST00000237786 Hspa12a protein_coding Interval_85808 chr19 32033010 32033586 + 0 NA intron (ENSMUSG00000024887.10, intron 10 of 23) protein_coding-intron (ENSMUSG00000024887.10, intron 8 of 21) -16494 ENSMUSG00000024887.10 ENSMUSG00000024887 ENSMUST00000235395 Asah2 protein_coding Interval_43490 chr13 31820604 31821259 + 0 NA intron (ENSMUSG00000038372.14, intron 9 of 10) protein_coding-intron (ENSMUSG00000038372.14, intron 9 of 10) 13805 ENSMUSG00000113119.1 ENSMUSG00000113119 ENSMUST00000221416 Gm48883 TEC Interval_166020 chr9 55525496 55526156 + 0 NA Intergenic Intergenic 7257 ENSMUSG00000110926.1 ENSMUSG00000110926 ENSMUST00000217638 Gm5917 processed_pseudogene Interval_162425 chr8 128572016 128572464 + 0 NA Intergenic Intergenic -61696 ENSMUSG00000110562.1 ENSMUSG00000110562 ENSMUST00000212641 Gm9204 processed_pseudogene Interval_113763 chr4 58437056 58437656 + 0 NA exon (ENSMUSG00000038668.14, exon 4 of 4) protein_coding-exon (ENSMUSG00000038668.14, exon 4 of 4) 3742 ENSMUSG00000093293.1 ENSMUSG00000093293 ENSMUST00000175552 Mir3095 miRNA Interval_174704 chrX 163812362 163812966 + 0 NA Intergenic Intergenic -34220 ENSMUSG00000081699.1 ENSMUSG00000081699 ENSMUST00000122098 Gm15213 processed_pseudogene Interval_39273 chr12 86380946 86381177 + 0 NA intron (ENSMUSG00000021255.17, intron 1 of 6) protein_coding-intron (ENSMUSG00000021255.17, intron 1 of 6) 33084 ENSMUSG00000113230.1 ENSMUSG00000113230 ENSMUST00000221001 Gm48101 processed_pseudogene Interval_55074 chr14 77716840 77717606 + 0 NA intron (ENSMUSG00000022012.9, intron 13 of 13) protein_coding-intron (ENSMUSG00000022012.9, intron 18 of 18) -63751 ENSMUSG00000115257.1 ENSMUSG00000115257 ENSMUST00000227970 Gm30467 lincRNA Interval_12970 chr10 8824618 8824881 + 0 NA promoter-TSS (ENSMUSG00000065692.1) snoRNA-promoter-TSS (ENSMUSG00000065692.1) -602 ENSMUSG00000065692.1 ENSMUSG00000065692 ENSMUST00000083758 Gm25410 snoRNA Interval_1027 chr1 14198384 14198778 + 0 NA intron (ENSMUSG00000025932.14, intron 11 of 16) protein_coding-intron (ENSMUSG00000025932.14, intron 12 of 17) 16003 ENSMUSG00000095853.1 ENSMUSG00000095853 ENSMUST00000179783 Gm22616 miRNA Interval_24019 chr11 29546467 29548930 + 0 NA promoter-TSS (ENSMUSG00000020461.10) protein_coding-promoter-TSS (ENSMUSG00000020461.10) 184 ENSMUSG00000020460.15 ENSMUSG00000020460 ENSMUST00000143418 Rps27a protein_coding Interval_92178 chr2 55366754 55366956 + 0 NA Intergenic Intergenic -44935 ENSMUSG00000087040.1 ENSMUSG00000087040 ENSMUST00000128307 Gm14033 lincRNA Interval_32302 chr11 106767732 106767942 + 0 NA TTS (ENSMUSG00000020718.12) protein_coding-TTS (ENSMUSG00000020718.12) -3096 ENSMUSG00000088400.1 ENSMUSG00000088400 ENSMUST00000157775 Gm25889 snRNA Interval_50123 chr14 8123410 8124305 + 0 NA intron (ENSMUSG00000033885.15, intron 3 of 17) protein_coding-intron (ENSMUSG00000033885.15, intron 3 of 17) 25634 ENSMUSG00000033885.15 ENSMUSG00000033885 ENSMUST00000224462 Pxk protein_coding Interval_49415 chr13 111829615 111829914 + 0 NA Intergenic Intergenic 19296 ENSMUSG00000085204.1 ENSMUSG00000085204 ENSMUST00000153958 Gm15327 processed_transcript Interval_84305 chr19 9964157 9964431 + 0 NA Intergenic Intergenic -18429 ENSMUSG00000024661.7 ENSMUSG00000024661 ENSMUST00000236403 Fth1 protein_coding Interval_52178 chr14 38289515 38290890 + 0 NA Intergenic Intergenic -27702 ENSMUSG00000114219.1 ENSMUSG00000114219 ENSMUST00000225614 Gm31456 lincRNA Interval_7739 chr1 133355464 133356440 + 0 NA intron (ENSMUSG00000070645.5, intron 4 of 8) protein_coding-intron (ENSMUSG00000070645.5, intron 4 of 8) 4043 ENSMUSG00000070645.5 ENSMUSG00000070645 ENSMUST00000112287 Ren1 protein_coding Interval_36506 chr12 46818174 46820048 + 0 NA promoter-TSS (ENSMUSG00000021047.7) protein_coding-promoter-TSS (ENSMUSG00000021047.7) -1121 ENSMUSG00000021047.7 ENSMUSG00000021047 ENSMUST00000220258 Nova1 protein_coding Interval_132813 chr5 148046084 148048415 + 0 NA intron (ENSMUSG00000029651.16, intron 1 of 14) protein_coding-intron (ENSMUSG00000029651.16, intron 1 of 14) -90083 ENSMUSG00000085565.1 ENSMUSG00000085565 ENSMUST00000138406 Gm15721 lincRNA Interval_56082 chr14 105455509 105457431 + 0 NA Intergenic Intergenic 28911 ENSMUSG00000115548.1 ENSMUSG00000115548 ENSMUST00000226670 5430440P10Rik lincRNA Interval_165536 chr9 49102444 49102775 + 0 NA promoter-TSS (ENSMUSG00000032268.13) protein_coding-promoter-TSS (ENSMUSG00000032268.13) -119 ENSMUSG00000032268.13 ENSMUSG00000032268 ENSMUST00000170426 Tmprss5 protein_coding Interval_151497 chr7 123097629 123098664 + 0 NA intron (ENSMUSG00000110230.1, intron 2 of 2) lincRNA-intron (ENSMUSG00000110230.1, intron 2 of 2) 66731 ENSMUSG00000109814.1 ENSMUSG00000109814 ENSMUST00000209402 Gm45847 lincRNA Interval_111080 chr4 11717817 11718053 + 0 NA Intergenic Intergenic 13478 ENSMUSG00000028214.13 ENSMUSG00000028214 ENSMUST00000029868 Gem protein_coding Interval_1965 chr1 35077344 35077967 + 0 NA Intergenic Intergenic 91999 ENSMUSG00000103997.1 ENSMUSG00000103997 ENSMUST00000192315 Gm38027 processed_pseudogene Interval_156870 chr8 61349260 61349622 + 0 NA exon (ENSMUSG00000031642.9, exon 5 of 12) protein_coding-exon (ENSMUSG00000031642.9, exon 5 of 12) -12148 ENSMUSG00000031642.9 ENSMUSG00000031642 ENSMUST00000210210 Sh3rf1 protein_coding Interval_96648 chr2 126774642 126775090 + 0 NA intron (ENSMUSG00000027364.14, intron 5 of 8) protein_coding-intron (ENSMUSG00000027364.14, intron 5 of 6) 8592 ENSMUSG00000027364.14 ENSMUSG00000027364 ENSMUST00000151140 Usp50 protein_coding Interval_77003 chr17 85576662 85577171 + 0 NA Intergenic Intergenic -22617 ENSMUSG00000098438.1 ENSMUSG00000098438 ENSMUST00000184962 Gm27178 processed_pseudogene Interval_19226 chr10 95611281 95611595 + 0 NA Intergenic Intergenic 7646 ENSMUSG00000089618.1 ENSMUSG00000089618 ENSMUST00000158993 Gm23776 misc_RNA Interval_38410 chr12 78805851 78806322 + 0 NA intron (ENSMUSG00000021112.9, intron 3 of 3) protein_coding-intron (ENSMUSG00000021112.9, intron 3 of 14) -53298 ENSMUSG00000088822.1 ENSMUSG00000088822 ENSMUST00000158197 Gm25225 snRNA Interval_94397 chr2 90738329 90739259 + 0 NA Intergenic Intergenic -6576 ENSMUSG00000008200.15 ENSMUSG00000008200 ENSMUST00000123955 Fnbp4 protein_coding Interval_59813 chr15 59521877 59522658 + 0 NA intron (ENSMUSG00000059586.10, intron 5 of 7) protein_coding-intron (ENSMUSG00000059586.10, intron 4 of 6) -96323 ENSMUSG00000115896.1 ENSMUSG00000115896 ENSMUST00000229684 Gm36677 lincRNA Interval_66955 chr16 38793536 38793800 + 0 NA intron (ENSMUSG00000049436.5, intron 1 of 7) protein_coding-intron (ENSMUSG00000049436.5, intron 1 of 7) -13325 ENSMUSG00000049436.5 ENSMUSG00000049436 ENSMUST00000232536 Upk1b protein_coding Interval_13759 chr10 21866269 21867147 + 0 NA Intergenic Intergenic 12184 ENSMUSG00000080607.1 ENSMUSG00000080607 ENSMUST00000116957 Gm23839 snoRNA Interval_67746 chr16 56807863 56808265 + 0 NA intron (ENSMUSG00000022754.6, intron 5 of 5) protein_coding-intron (ENSMUSG00000022754.6, intron 5 of 5) -12209 ENSMUSG00000022755.4 ENSMUSG00000022755 ENSMUST00000023437 Adgrg7 protein_coding Interval_122206 chr5 19717737 19717935 + 0 NA intron (ENSMUSG00000040003.18, intron 2 of 20) protein_coding-intron (ENSMUSG00000040003.18, intron 2 of 22) -202329 ENSMUSG00000088668.1 ENSMUSG00000088668 ENSMUST00000158043 Gm25335 snRNA Interval_159110 chr8 90762278 90763265 + 0 NA promoter-TSS (ENSMUSG00000110212.1) lincRNA-promoter-TSS (ENSMUSG00000110212.1) -175 ENSMUSG00000110212.1 ENSMUSG00000110212 ENSMUST00000211762 Gm35963 lincRNA Interval_99050 chr2 156862168 156864040 + 0 NA promoter-TSS (ENSMUSG00000027637.3) protein_coding-promoter-TSS (ENSMUSG00000027637.3) -41 ENSMUSG00000027637.3 ENSMUSG00000027637 ENSMUST00000126767 Rab5if protein_coding Interval_40243 chr12 102713298 102714954 + 0 NA intron (ENSMUSG00000096751.3, intron 2 of 2) processed_transcript-intron (ENSMUSG00000096751.3, intron 2 of 2) 13196 ENSMUSG00000100006.1 ENSMUSG00000100006 ENSMUST00000180187 Gm21971 lincRNA Interval_17597 chr10 78075020 78075264 + 0 NA intron (ENSMUSG00000000732.9, intron 1 of 3) protein_coding-intron (ENSMUSG00000000732.9, intron 4 of 6) 1803 ENSMUSG00000000732.9 ENSMUSG00000000732 ENSMUST00000219633 Icosl protein_coding Interval_121313 chr4 154927755 154928265 + 0 NA promoter-TSS (ENSMUSG00000042333.16) protein_coding-promoter-TSS (ENSMUSG00000042333.16) 67 ENSMUSG00000042333.16 ENSMUSG00000042333 ENSMUST00000145296 Tnfrsf14 protein_coding Interval_156151 chr8 45179000 45179638 + 0 NA intron (ENSMUSG00000110260.1, intron 4 of 4) lincRNA-intron (ENSMUSG00000110260.1, intron 4 of 4) -7422 ENSMUSG00000110260.1 ENSMUSG00000110260 ENSMUST00000209762 Gm30504 lincRNA Interval_121017 chr4 152233931 152234382 + 0 NA intron (ENSMUSG00000028937.14, intron 5 of 8) protein_coding-intron (ENSMUSG00000028937.14, intron 5 of 8) 30230 ENSMUSG00000085724.1 ENSMUSG00000085724 ENSMUST00000127752 Gm13096 sense_intronic Interval_44478 chr13 45213327 45214038 + 0 NA Intergenic Intergenic -22729 ENSMUSG00000113772.1 ENSMUSG00000113772 ENSMUST00000222925 Gm47448 lincRNA Interval_81205 chr18 56431305 56432460 + 0 NA promoter-TSS (ENSMUSG00000001700.10) protein_coding-promoter-TSS (ENSMUSG00000001700.10) -37385 ENSMUSG00000001700.10 ENSMUSG00000001700 ENSMUST00000237716 Gramd3 protein_coding Interval_20272 chr10 116561820 116563383 + 0 NA intron (ENSMUSG00000020166.15, intron 1 of 5) protein_coding-intron (ENSMUSG00000020166.15, intron 1 of 4) -4181 ENSMUSG00000112881.1 ENSMUSG00000112881 ENSMUST00000220056 Gm49344 TEC Interval_44935 chr13 50344174 50344434 + 0 NA intron (ENSMUSG00000101136.1, intron 1 of 1) antisense-intron (ENSMUSG00000101136.1, intron 1 of 1) 76328 ENSMUSG00000114035.1 ENSMUSG00000114035 ENSMUST00000222366 Gm31126 lincRNA Interval_124762 chr5 53710880 53712537 + 0 NA Intergenic Intergenic -4148 ENSMUSG00000029193.7 ENSMUSG00000029193 ENSMUST00000202946 Cckar protein_coding Interval_59907 chr15 61506402 61507055 + 0 NA Intergenic Intergenic 37455 ENSMUSG00000116109.1 ENSMUSG00000116109 ENSMUST00000229194 Gm49498 lincRNA Interval_10458 chr1 171028627 171029860 + 0 NA exon (ENSMUSG00000059089.4, exon 5 of 5) protein_coding-exon (ENSMUSG00000059089.4, exon 5 of 5) 1278 ENSMUSG00000065905.1 ENSMUSG00000065905 ENSMUST00000083971 Gm26110 snRNA Interval_3079 chr1 52952306 52953995 + 0 NA promoter-TSS (ENSMUSG00000043629.12) protein_coding-promoter-TSS (ENSMUSG00000043629.12) 67029 ENSMUSG00000043629.12 ENSMUSG00000043629 ENSMUST00000190726 1700019D03Rik protein_coding Interval_167042 chr9 64778383 64778772 + 0 NA Intergenic Intergenic -51847 ENSMUSG00000104953.1 ENSMUSG00000104953 ENSMUST00000197528 Gm47308 miRNA Interval_3211 chr1 54896889 54897262 + 0 NA intron (ENSMUSG00000052331.14, intron 1 of 7) protein_coding-intron (ENSMUSG00000052331.14, intron 1 of 27) 19519 ENSMUSG00000102642.1 ENSMUSG00000102642 ENSMUST00000193052 A130048G24Rik TEC Interval_118302 chr4 130153863 130154432 + 0 NA Intergenic Intergenic -16519 ENSMUSG00000028778.15 ENSMUSG00000028778 ENSMUST00000164887 Hcrtr1 protein_coding Interval_43481 chr13 31771921 31772193 + 0 NA Intergenic Intergenic -25482 ENSMUSG00000086144.2 ENSMUSG00000086144 ENSMUST00000154678 Gm11379 antisense Interval_24246 chr11 31759852 31760466 + 0 NA Intergenic Intergenic 61511 ENSMUSG00000103635.1 ENSMUSG00000103635 ENSMUST00000192490 Gm38061 TEC Interval_118312 chr4 130217395 130217698 + 0 NA intron (ENSMUSG00000023120.9, intron 5 of 9) protein_coding-intron (ENSMUSG00000023120.9, intron 5 of 9) -7690 ENSMUSG00000023120.9 ENSMUSG00000023120 ENSMUST00000023884 Ldc1 protein_coding Interval_93316 chr2 71884726 71884945 + 0 NA TTS (ENSMUSG00000006494.11) protein_coding-TTS (ENSMUSG00000006494.11) 11489 ENSMUSG00000006494.11 ENSMUSG00000006494 ENSMUST00000129427 Pdk1 protein_coding Interval_69847 chr16 97502305 97502629 + 0 NA intron (ENSMUSG00000022938.8, intron 2 of 8) protein_coding-intron (ENSMUSG00000022938.8, intron 1 of 7) -3445 ENSMUSG00000088269.1 ENSMUSG00000088269 ENSMUST00000157644 Gm24777 rRNA Interval_73872 chr17 45061448 45061644 + 0 NA intron (ENSMUSG00000038954.14, intron 11 of 11) protein_coding-intron (ENSMUSG00000038954.14, intron 11 of 11) -85691 ENSMUSG00000117044.1 ENSMUSG00000117044 ENSMUST00000233532 Gm35097 lincRNA Interval_91644 chr2 45184608 45185550 + 0 NA Intergenic Intergenic 28154 ENSMUSG00000100135.1 ENSMUSG00000100135 ENSMUST00000188811 Gm28643 lincRNA Interval_34626 chr12 8098871 8100266 + 0 NA intron (ENSMUSG00000112694.1, intron 2 of 3) antisense-intron (ENSMUSG00000112694.1, intron 2 of 3) -108581 ENSMUSG00000037669.15 ENSMUSG00000037669 ENSMUST00000219532 Ldah protein_coding Interval_136708 chr6 58212966 58213181 + 0 NA TTS (ENSMUSG00000071428.2) protein_coding-TTS (ENSMUSG00000071428.2) 5748 ENSMUSG00000071428.2 ENSMUSG00000071428 ENSMUST00000095862 Vmn1r27 protein_coding Interval_170841 chr9 111089115 111089804 + 0 NA Intergenic Intergenic 14065 ENSMUSG00000088296.1 ENSMUSG00000088296 ENSMUST00000157671 Gm26409 snRNA Interval_63034 chr15 98752763 98753494 + 0 NA intron (ENSMUSG00000051853.10, intron 1 of 4) protein_coding-intron (ENSMUSG00000051853.10, intron 1 of 4) 9864 ENSMUSG00000051853.10 ENSMUSG00000051853 ENSMUST00000156572 Arf3 protein_coding Interval_23686 chr11 24596408 24597331 + 0 NA intron (ENSMUSG00000087085.1, intron 2 of 3) lincRNA-intron (ENSMUSG00000087085.1, intron 2 of 3) -42811 ENSMUSG00000088502.1 ENSMUSG00000088502 ENSMUST00000157877 Gm22787 snRNA Interval_33643 chr11 117707157 117707426 + 0 NA intron (ENSMUSG00000025571.13, intron 3 of 20) protein_coding-intron (ENSMUSG00000025571.13, intron 3 of 21) -41940 ENSMUSG00000025571.13 ENSMUSG00000025571 ENSMUST00000141287 Tnrc6c protein_coding Interval_135900 chr6 48552353 48553305 + 0 NA Intergenic Intergenic -1970 ENSMUSG00000073096.11 ENSMUSG00000073096 ENSMUST00000203627 Lrrc61 protein_coding Interval_120358 chr4 148087085 148088170 + 0 NA intron (ENSMUSG00000029007.8, intron 1 of 1) protein_coding-intron (ENSMUSG00000029007.8, intron 1 of 4) -2851 ENSMUSG00000029007.8 ENSMUSG00000029007 ENSMUST00000137393 Agtrap protein_coding Interval_60980 chr15 78466806 78467039 + 0 NA intron (ENSMUSG00000016942.6, intron 1 of 17) protein_coding-intron (ENSMUSG00000016942.6, intron 1 of 17) -22543 ENSMUSG00000016942.6 ENSMUSG00000016942 ENSMUST00000229124 Tmprss6 protein_coding Interval_35910 chr12 31853429 31853840 + 0 NA intron (ENSMUSG00000035933.5, intron 14 of 22) protein_coding-intron (ENSMUSG00000035933.5, intron 14 of 22) -4008 ENSMUSG00000111987.1 ENSMUSG00000111987 ENSMUST00000220137 Gm48809 antisense Interval_16835 chr10 69001974 69003053 + 0 NA Intergenic Intergenic 31375 ENSMUSG00000112331.1 ENSMUSG00000112331 ENSMUST00000219854 Gm33035 lincRNA Interval_10960 chr1 177594529 177594729 + 0 NA promoter-TSS (ENSMUSG00000102885.1) lincRNA-promoter-TSS (ENSMUSG00000102885.1) -107 ENSMUSG00000102885.1 ENSMUSG00000102885 ENSMUST00000194583 Gm37280 lincRNA Interval_7761 chr1 133492139 133493850 + 0 NA Intergenic Intergenic -36485 ENSMUSG00000101004.1 ENSMUSG00000101004 ENSMUST00000188004 Gm8596 processed_pseudogene Interval_54322 chr14 67659498 67659819 + 0 NA Intergenic Intergenic 15448 ENSMUSG00000093726.1 ENSMUSG00000093726 ENSMUST00000175674 Gm20667 sense_overlapping Interval_33229 chr11 115358277 115360031 + 0 NA intron (ENSMUSG00000034586.14, intron 1 of 3) protein_coding-intron (ENSMUSG00000034586.14, intron 4 of 18) -3781 ENSMUSG00000034586.14 ENSMUSG00000034586 ENSMUST00000152977 Hid1 protein_coding Interval_152974 chr7 140171336 140172338 + 0 NA Intergenic Intergenic -1398 ENSMUSG00000051051.7 ENSMUSG00000051051 ENSMUST00000055890 Olfr523 protein_coding Interval_114264 chr4 70315691 70316011 + 0 NA intron (ENSMUSG00000039298.16, intron 13 of 36) protein_coding-intron (ENSMUSG00000039298.16, intron 10 of 33) -66478 ENSMUSG00000080902.1 ENSMUSG00000080902 ENSMUST00000120944 Ywhaq-ps3 transcribed_processed_pseudogene Interval_145991 chr7 42902928 42903774 + 0 NA exon (ENSMUSG00000090751.2, exon 6 of 6) protein_coding-exon (ENSMUSG00000090751.2, exon 6 of 6) 24755 ENSMUSG00000092191.1 ENSMUSG00000092191 ENSMUST00000172692 Gm7211 processed_pseudogene Interval_37781 chr12 71958992 71960188 + 0 NA intron (ENSMUSG00000034574.10, intron 16 of 25) protein_coding-intron (ENSMUSG00000034574.10, intron 16 of 25) 89669 ENSMUSG00000114155.1 ENSMUSG00000114155 ENSMUST00000221336 Gm7986 processed_pseudogene Interval_45747 chr13 57558908 57559221 + 0 NA intron (ENSMUSG00000056222.15, intron 5 of 10) protein_coding-intron (ENSMUSG00000056222.15, intron 3 of 9) 282386 ENSMUSG00000114411.1 ENSMUSG00000114411 ENSMUST00000224461 Gm48176 processed_pseudogene Interval_13635 chr10 20319086 20319376 + 0 NA exon (ENSMUSG00000037608.16, exon 1 of 1) protein_coding-exon (ENSMUSG00000037608.16, exon 1 of 1) 6699 ENSMUSG00000037608.16 ENSMUSG00000037608 ENSMUST00000188546 Bclaf1 protein_coding Interval_48509 chr13 99553172 99554197 + 0 NA Intergenic Intergenic -7758 ENSMUSG00000114578.1 ENSMUSG00000114578 ENSMUST00000224215 Gm47158 processed_pseudogene Interval_111813 chr4 31010779 31010969 + 0 NA Intergenic Intergenic 164138 ENSMUSG00000065053.1 ENSMUSG00000065053 ENSMUST00000083119 Gm25705 snRNA Interval_98375 chr2 151938008 151939294 + 0 NA intron (ENSMUSG00000027460.7, intron 6 of 8) protein_coding-intron (ENSMUSG00000027460.7, intron 6 of 8) 11990 ENSMUSG00000087004.1 ENSMUSG00000087004 ENSMUST00000142642 Gm14154 antisense Interval_70624 chr17 12433707 12434014 + 0 NA exon (ENSMUSG00000023828.3, exon 6 of 11) protein_coding-exon (ENSMUSG00000023828.3, exon 6 of 11) -33060 ENSMUSG00000117314.1 ENSMUSG00000117314 ENSMUST00000233360 C030013G03Rik antisense Interval_147716 chr7 72615036 72615640 + 0 NA Intergenic Intergenic 13349 ENSMUSG00000103673.1 ENSMUSG00000103673 ENSMUST00000192910 Gm37620 TEC Interval_163421 chr9 21376889 21377208 + 0 NA promoter-TSS (ENSMUSG00000032178.14) protein_coding-promoter-TSS (ENSMUSG00000032178.14) -7864 ENSMUSG00000110915.1 ENSMUSG00000110915 ENSMUST00000217490 Gm36198 antisense Interval_152067 chr7 128744554 128745483 + 0 NA promoter-TSS (ENSMUSG00000055319.8) protein_coding-promoter-TSS (ENSMUSG00000055319.8) 258 ENSMUSG00000108720.1 ENSMUSG00000108720 ENSMUST00000206944 Gm44672 antisense Interval_53146 chr14 54711366 54711633 + 0 NA exon (ENSMUSG00000052435.7, exon 1 of 2) protein_coding-exon (ENSMUSG00000052435.7, exon 1 of 2) 675 ENSMUSG00000052435.7 ENSMUSG00000052435 ENSMUST00000064290 Cebpe protein_coding Interval_120132 chr4 142844565 142845388 + 0 NA intron (ENSMUSG00000110067.2, intron 1 of 1) protein_coding-intron (ENSMUSG00000110067.2, intron 1 of 2) 54168 ENSMUSG00000103678.1 ENSMUSG00000103678 ENSMUST00000193751 Gm37624 TEC Interval_20692 chr10 120259065 120259277 + 0 NA Intergenic Intergenic -22069 ENSMUSG00000112322.1 ENSMUSG00000112322 ENSMUST00000219103 Gm48115 TEC Interval_112665 chr4 43936564 43936909 + 0 NA intron (ENSMUSG00000028476.13, intron 17 of 21) protein_coding-intron (ENSMUSG00000028476.13, intron 16 of 20) -3662 ENSMUSG00000028476.13 ENSMUSG00000028476 ENSMUST00000130415 Reck protein_coding Interval_58470 chr15 34910169 34912569 + 0 NA intron (ENSMUSG00000022329.15, intron 10 of 10) protein_coding-intron (ENSMUSG00000022329.15, intron 10 of 10) 48868 ENSMUSG00000022329.15 ENSMUSG00000022329 ENSMUST00000138841 Stk3 protein_coding Interval_44174 chr13 41571764 41572623 + 0 NA Intergenic Intergenic 5881 ENSMUSG00000092835.1 ENSMUSG00000092835 ENSMUST00000175094 Gm24819 snRNA Interval_99460 chr2 161393426 161393768 + 0 NA Intergenic Intergenic 62283 ENSMUSG00000087031.1 ENSMUSG00000087031 ENSMUST00000151260 Gm14241 lincRNA Interval_161428 chr8 120416431 120417377 + 0 NA intron (ENSMUSG00000031822.20, intron 2 of 2) protein_coding-intron (ENSMUSG00000092329.1, intron 1 of 15) 26645 ENSMUSG00000080549.2 ENSMUSG00000080549 ENSMUST00000116899 Gm22715 miRNA Interval_82220 chr18 69351499 69353115 + 0 NA intron (ENSMUSG00000053477.17, intron 1 of 6) protein_coding-intron (ENSMUSG00000053477.17, intron 3 of 20) 96019 ENSMUSG00000098060.1 ENSMUSG00000098060 ENSMUST00000183237 Gm4842 processed_pseudogene Interval_26953 chr11 61809770 61810631 + 0 NA intron (ENSMUSG00000004798.14, intron 12 of 24) protein_coding-intron (ENSMUSG00000004798.14, intron 14 of 26) -6179 ENSMUSG00000004798.14 ENSMUSG00000004798 ENSMUST00000157049 Ulk2 protein_coding Interval_138096 chr6 85141136 85141451 + 0 NA intron (ENSMUSG00000072950.5, intron 1 of 1) unprocessed_pseudogene-intron (ENSMUSG00000072950.5, intron 1 of 1) 788 ENSMUSG00000072950.5 ENSMUSG00000072950 ENSMUST00000126708 Gm10444 unprocessed_pseudogene Interval_24354 chr11 32625832 32626231 + 0 NA Intergenic Intergenic -16873 ENSMUSG00000020271.17 ENSMUSG00000020271 ENSMUST00000143290 Fbxw11 protein_coding Interval_25653 chr11 50421601 50422801 + 0 NA promoter-TSS (ENSMUSG00000020375.9) protein_coding-promoter-TSS (ENSMUSG00000020375.9) -7626 ENSMUSG00000020375.9 ENSMUSG00000020375 ENSMUST00000129304 Rufy1 protein_coding Interval_100769 chr2 172447034 172447968 + 0 NA intron (ENSMUSG00000027502.11, intron 5 of 7) protein_coding-intron (ENSMUSG00000027502.11, intron 5 of 8) -5476 ENSMUSG00000027502.11 ENSMUSG00000027502 ENSMUST00000140048 Rtf2 protein_coding Interval_92587 chr2 60904134 60904515 + 0 NA intron (ENSMUSG00000026970.16, intron 1 of 13) protein_coding-intron (ENSMUSG00000026970.16, intron 1 of 13) -22886 ENSMUSG00000026970.16 ENSMUSG00000026970 ENSMUST00000128866 Rbms1 protein_coding Interval_118412 chr4 131252375 131253631 + 0 NA Intergenic Intergenic 13726 ENSMUSG00000088041.1 ENSMUSG00000088041 ENSMUST00000157416 Gm25261 snoRNA Interval_14996 chr10 41781031 41781239 + 0 NA exon (ENSMUSG00000102114.2, exon 4 of 4) antisense-exon (ENSMUSG00000102114.2, exon 4 of 4) 28495 ENSMUSG00000019813.16 ENSMUSG00000019813 ENSMUST00000215496 Cep57l1 protein_coding Interval_111596 chr4 24278293 24278739 + 0 NA Intergenic Intergenic 40416 ENSMUSG00000083154.1 ENSMUSG00000083154 ENSMUST00000117711 Gm11892 processed_pseudogene Interval_108034 chr3 120763679 120763961 + 0 NA intron (ENSMUSG00000098097.7, intron 3 of 3) lincRNA-intron (ENSMUSG00000098097.7, intron 3 of 11) -24259 ENSMUSG00000105207.1 ENSMUSG00000105207 ENSMUST00000200624 Gm42927 processed_pseudogene Interval_55903 chr14 101918703 101919685 + 0 NA exon (ENSMUSG00000033060.16, exon 1 of 4) protein_coding-exon (ENSMUSG00000033060.16, exon 1 of 4) 63569 ENSMUSG00000115584.1 ENSMUSG00000115584 ENSMUST00000226515 Gm5854 processed_pseudogene Interval_53964 chr14 63867684 63867994 + 0 NA intron (ENSMUSG00000021958.5, intron 3 of 6) protein_coding-intron (ENSMUSG00000021958.5, intron 3 of 6) -31930 ENSMUSG00000021958.5 ENSMUSG00000021958 ENSMUST00000225564 Pinx1 protein_coding Interval_10279 chr1 167923014 167923771 + 0 NA Intergenic Intergenic -80747 ENSMUSG00000093538.2 ENSMUSG00000093538 ENSMUST00000177351 Gm20711 antisense Interval_31271 chr11 99256416 99256752 + 0 NA Intergenic Intergenic -17709 ENSMUSG00000035849.14 ENSMUSG00000035849 ENSMUST00000154622 Krt222 protein_coding Interval_26988 chr11 62178179 62178831 + 0 NA intron (ENSMUSG00000042331.13, intron 12 of 14) protein_coding-intron (ENSMUSG00000042331.13, intron 10 of 12) 61086 ENSMUSG00000118644.1 ENSMUSG00000118644 ENSMUST00000239393 AL592080.1 unprocessed_pseudogene Interval_44567 chr13 46173098 46173332 + 0 NA Intergenic Intergenic 17831 ENSMUSG00000062282.4 ENSMUSG00000062282 ENSMUST00000072437 Gm10113 lincRNA Interval_142883 chr6 146662446 146663140 + 0 NA intron (ENSMUSG00000085238.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000085238.1, intron 1 of 2) 5575 ENSMUSG00000085238.1 ENSMUSG00000085238 ENSMUST00000146754 4930479D17Rik lincRNA Interval_134675 chr6 30285077 30285579 + 0 NA intron (ENSMUSG00000039159.16, intron 1 of 4) protein_coding-intron (ENSMUSG00000039159.16, intron 1 of 4) 19200 ENSMUSG00000039159.16 ENSMUSG00000039159 ENSMUST00000148744 Ube2h protein_coding Interval_43166 chr13 24800124 24802267 + 0 NA promoter-TSS (ENSMUSG00000019132.11) protein_coding-promoter-TSS (ENSMUSG00000019132.11) -825 ENSMUSG00000019132.11 ENSMUSG00000019132 ENSMUST00000155575 BC005537 protein_coding Interval_77047 chr17 85985201 85985412 + 0 NA exon (ENSMUSG00000024135.10, exon 21 of 21) protein_coding-exon (ENSMUSG00000024135.10, exon 21 of 21) 55058 ENSMUSG00000024135.10 ENSMUSG00000024135 ENSMUST00000234595 Srbd1 protein_coding Interval_21905 chr11 5114749 5115706 + 0 NA intron (ENSMUSG00000034164.17, intron 13 of 14) protein_coding-intron (ENSMUSG00000034164.17, intron 13 of 14) 15751 ENSMUSG00000034175.13 ENSMUSG00000034175 ENSMUST00000129016 Rhbdd3 protein_coding Interval_9974 chr1 164473691 164473948 + 0 NA Intergenic Intergenic 11377 ENSMUSG00000104011.1 ENSMUSG00000104011 ENSMUST00000191839 Gm32391 lincRNA Interval_17409 chr10 76420411 76420623 + 0 NA exon (ENSMUSG00000001151.10, exon 12 of 42) protein_coding-exon (ENSMUSG00000001151.10, exon 12 of 42) -3605 ENSMUSG00000001151.10 ENSMUSG00000001151 ENSMUST00000219701 Pcnt protein_coding Interval_106925 chr3 101982113 101983060 + 0 NA Intergenic Intergenic -27569 ENSMUSG00000048540.8 ENSMUSG00000048540 ENSMUST00000198675 Nhlh2 protein_coding Interval_161890 chr8 123476999 123478703 + 0 NA promoter-TSS (ENSMUSG00000031967.15) protein_coding-promoter-TSS (ENSMUSG00000031967.15) 6467 ENSMUSG00000088233.1 ENSMUSG00000088233 ENSMUST00000157608 Gm25428 snoRNA Interval_92249 chr2 57317418 57317637 + 0 NA intron (ENSMUSG00000026827.12, intron 6 of 16) protein_coding-intron (ENSMUSG00000026827.12, intron 6 of 16) -41841 ENSMUSG00000084292.1 ENSMUSG00000084292 ENSMUST00000118714 Gm13535 processed_pseudogene Interval_165215 chr9 45402618 45403376 + 0 NA promoter-TSS (ENSMUSG00000059412.7) protein_coding-promoter-TSS (ENSMUSG00000059412.7) -4175 ENSMUSG00000059412.7 ENSMUSG00000059412 ENSMUST00000217549 Fxyd2 protein_coding Interval_138121 chr6 85308451 85309084 + 0 NA intron (ENSMUSG00000033720.12, intron 2 of 3) protein_coding-intron (ENSMUSG00000033720.12, intron 2 of 13) 24655 ENSMUSG00000033720.12 ENSMUSG00000033720 ENSMUST00000203035 Sfxn5 protein_coding Interval_83017 chr18 80437922 80438329 + 0 NA intron (ENSMUSG00000033323.14, intron 10 of 12) protein_coding-intron (ENSMUSG00000033323.14, intron 10 of 12) 2734 ENSMUSG00000033323.14 ENSMUSG00000033323 ENSMUST00000161003 Ctdp1 protein_coding Interval_80453 chr18 42335591 42335824 + 0 NA intron (ENSMUSG00000024491.16, intron 14 of 15) protein_coding-intron (ENSMUSG00000024491.16, intron 18 of 19) 33817 ENSMUSG00000092935.1 ENSMUSG00000092935 ENSMUST00000175194 Gm22697 miRNA Interval_61411 chr15 81426451 81426948 + 0 NA intron (ENSMUSG00000022401.12, intron 3 of 10) protein_coding-intron (ENSMUSG00000022401.12, intron 2 of 8) -7511 ENSMUSG00000091492.1 ENSMUSG00000091492 ENSMUST00000133273 Gm17025 antisense Interval_75690 chr17 70697368 70698221 + 0 NA intron (ENSMUSG00000003279.17, intron 4 of 9) protein_coding-intron (ENSMUSG00000003279.17, intron 9 of 14) 57788 ENSMUSG00000097282.1 ENSMUSG00000097282 ENSMUST00000181546 5031415H12Rik antisense Interval_30476 chr11 94605238 94606145 + 0 NA Intergenic Intergenic -1711 ENSMUSG00000082945.1 ENSMUSG00000082945 ENSMUST00000117457 Gm11540 unprocessed_pseudogene Interval_56727 chr14 121685453 121686718 + 0 NA intron (ENSMUSG00000025558.19, intron 1 of 52) protein_coding-intron (ENSMUSG00000025558.19, intron 1 of 53) 52776 ENSMUSG00000025558.19 ENSMUSG00000025558 ENSMUST00000238406 Dock9 protein_coding Interval_10845 chr1 175913917 175914117 + 0 NA TTS (ENSMUSG00000039748.11) protein_coding-TTS (ENSMUSG00000039748.11) -6312 ENSMUSG00000104158.2 ENSMUSG00000104158 ENSMUST00000194391 Gm38100 protein_coding Interval_106999 chr3 102724964 102726000 + 0 NA intron (ENSMUSG00000086745.1, intron 3 of 3) antisense-intron (ENSMUSG00000086745.1, intron 3 of 3) 9935 ENSMUSG00000086745.1 ENSMUSG00000086745 ENSMUST00000146624 Tspan2os antisense Interval_88335 chr2 3957471 3958943 + 0 NA Intergenic Intergenic -29068 ENSMUSG00000086445.1 ENSMUSG00000086445 ENSMUST00000136489 Gm13191 lincRNA Interval_16211 chr10 61451492 61453366 + 0 NA exon (ENSMUSG00000020091.15, exon 1 of 3) protein_coding-exon (ENSMUSG00000020091.15, exon 1 of 3) 229 ENSMUSG00000020091.15 ENSMUSG00000020091 ENSMUST00000167087 Eif4ebp2 protein_coding Interval_8326 chr1 137349809 137350630 + 0 NA Intergenic Intergenic 17028 ENSMUSG00000088164.1 ENSMUSG00000088164 ENSMUST00000157539 Gm23534 snoRNA Interval_83241 chr18 82949401 82949954 + 0 NA intron (ENSMUSG00000058881.13, intron 1 of 1) protein_coding-intron (ENSMUSG00000058881.13, intron 1 of 5) -29117 ENSMUSG00000118339.1 ENSMUSG00000118339 ENSMUST00000237056 4930592I03Rik processed_transcript Interval_88821 chr2 11452858 11453198 + 0 NA Intergenic Intergenic 32804 ENSMUSG00000082314.2 ENSMUSG00000082314 ENSMUST00000117854 Gm13296 processed_pseudogene Interval_173306 chrX 77718029 77718518 + 0 NA promoter-TSS (ENSMUSG00000081358.1) processed_pseudogene-promoter-TSS (ENSMUSG00000081358.1) -290 ENSMUSG00000081358.1 ENSMUSG00000081358 ENSMUST00000120309 Gm14746 processed_pseudogene Interval_53708 chr14 61045530 61046959 + 0 NA exon (ENSMUSG00000060548.13, exon 1 of 10) protein_coding-exon (ENSMUSG00000060548.13, exon 1 of 10) -8353 ENSMUSG00000060548.13 ENSMUSG00000060548 ENSMUST00000225730 Tnfrsf19 protein_coding Interval_13953 chr10 24972368 24973395 + 0 NA Intergenic Intergenic -27139 ENSMUSG00000111970.1 ENSMUSG00000111970 ENSMUST00000218700 Gm47715 lincRNA Interval_8199 chr1 136449987 136450951 + 0 NA Intergenic Intergenic -17466 ENSMUSG00000041498.13 ENSMUSG00000041498 ENSMUST00000195274 Kif14 protein_coding Interval_27396 chr11 67305870 67306110 + 0 NA exon (ENSMUSG00000055775.16, exon 37 of 40) protein_coding-exon (ENSMUSG00000055775.16, exon 37 of 40) 25999 ENSMUSG00000055775.16 ENSMUSG00000055775 ENSMUST00000139052 Myh8 protein_coding Interval_120917 chr4 151610094 151610947 + 0 NA intron (ENSMUSG00000014592.21, intron 3 of 24) protein_coding-intron (ENSMUSG00000014592.21, intron 3 of 23) 234050 ENSMUSG00000085593.1 ENSMUSG00000085593 ENSMUST00000129097 4930589P08Rik antisense Interval_17095 chr10 71326377 71327218 + 0 NA Intergenic Intergenic 8031 ENSMUSG00000112582.1 ENSMUSG00000112582 ENSMUST00000219540 Rpl19-ps2 processed_pseudogene Interval_79195 chr18 25576735 25577857 + 0 NA intron (ENSMUSG00000024268.16, intron 2 of 5) protein_coding-intron (ENSMUSG00000024268.16, intron 2 of 12) -20194 ENSMUSG00000114306.1 ENSMUSG00000114306 ENSMUST00000223994 Gm3227 antisense Interval_51265 chr14 25626656 25626989 + 0 NA intron (ENSMUSG00000007817.15, intron 1 of 4) protein_coding-intron (ENSMUSG00000007817.15, intron 6 of 23) -67372 ENSMUSG00000021868.7 ENSMUSG00000021868 ENSMUST00000223872 Ppif protein_coding Interval_156077 chr8 43603028 43604221 + 0 NA Intergenic Intergenic 23652 ENSMUSG00000050190.4 ENSMUSG00000050190 ENSMUST00000056023 Adam34l protein_coding Interval_126355 chr5 86965826 86966031 + 0 NA Intergenic Intergenic 3552 ENSMUSG00000118539.1 ENSMUSG00000118539 ENSMUST00000238959 AC160532.1 processed_pseudogene Interval_81905 chr18 65742338 65742811 + 0 NA intron (ENSMUSG00000046610.15, intron 9 of 12) protein_coding-intron (ENSMUSG00000046610.15, intron 11 of 14) -27184 ENSMUSG00000118208.1 ENSMUSG00000118208 ENSMUST00000237991 Gm50234 processed_pseudogene Interval_65440 chr16 22359486 22359734 + 0 NA Intergenic Intergenic 42219 ENSMUSG00000013089.15 ENSMUSG00000013089 ENSMUST00000170393 Etv5 protein_coding Interval_6829 chr1 119925108 119926042 + 0 NA exon (ENSMUSG00000036962.12, exon 22 of 23) protein_coding-exon (ENSMUSG00000036962.12, exon 22 of 23) -12367 ENSMUSG00000036975.5 ENSMUSG00000036975 ENSMUST00000037906 Tmem177 protein_coding Interval_16946 chr10 70062233 70062771 + 0 NA Intergenic Intergenic -112509 ENSMUSG00000048701.13 ENSMUSG00000048701 ENSMUST00000135607 Ccdc6 protein_coding Interval_115633 chr4 101507267 101510269 + 0 NA intron (ENSMUSG00000028528.17, intron 1 of 2) protein_coding-intron (ENSMUSG00000028528.17, intron 1 of 18) 12137 ENSMUSG00000028528.17 ENSMUSG00000028528 ENSMUST00000106933 Dnajc6 protein_coding Interval_89769 chr2 25318234 25319566 + 0 NA exon (ENSMUSG00000026959.13, exon 1 of 20) protein_coding-exon (ENSMUSG00000026959.13, exon 1 of 20) 226 ENSMUSG00000026959.13 ENSMUSG00000026959 ENSMUST00000144402 Grin1 protein_coding Interval_88729 chr2 10047515 10049111 + 0 NA exon (ENSMUSG00000025782.12, exon 1 of 7) protein_coding-exon (ENSMUSG00000025782.12, exon 1 of 7) 475 ENSMUSG00000103570.1 ENSMUSG00000103570 ENSMUST00000194765 C630004M23Rik TEC Interval_56619 chr14 120888240 120888430 + 0 NA Intergenic Intergenic -27512 ENSMUSG00000030662.10 ENSMUSG00000030662 ENSMUST00000228277 Ipo5 protein_coding Interval_51575 chr14 30443909 30444370 + 0 NA intron (ENSMUSG00000015968.18, intron 1 of 1) protein_coding-intron (ENSMUSG00000015968.18, intron 1 of 46) 20869 ENSMUSG00000114966.1 ENSMUSG00000114966 ENSMUST00000224520 Gm18681 processed_pseudogene Interval_132448 chr5 144983182 144983643 + 0 NA TTS (ENSMUSG00000038770.17) protein_coding-TTS (ENSMUSG00000038770.17) -36766 ENSMUSG00000105177.1 ENSMUSG00000105177 ENSMUST00000196761 Gm43563 unprocessed_pseudogene Interval_128627 chr5 114379885 114381235 + 0 NA promoter-TSS (ENSMUSG00000001098.15) protein_coding-promoter-TSS (ENSMUSG00000001098.15) -10353 ENSMUSG00000001098.15 ENSMUSG00000001098 ENSMUST00000123538 Kctd10 protein_coding Interval_24271 chr11 31981372 31983123 + 0 NA Intergenic Intergenic 16655 ENSMUSG00000020299.6 ENSMUSG00000020299 ENSMUST00000102829 4930524B15Rik protein_coding Interval_104241 chr3 61642258 61643220 + 0 NA Intergenic Intergenic -179878 ENSMUSG00000098208.1 ENSMUSG00000098208 ENSMUST00000182720 Gm8349 processed_pseudogene Interval_160663 chr8 111438516 111439671 + 0 NA Intergenic Intergenic -11107 ENSMUSG00000098410.1 ENSMUSG00000098410 ENSMUST00000184608 Mir1957b miRNA Interval_153832 chr8 9357777 9358709 + 0 NA intron (ENSMUSG00000079157.4, intron 1 of 3) protein_coding-intron (ENSMUSG00000079157.4, intron 1 of 2) -13117 ENSMUSG00000109286.1 ENSMUSG00000109286 ENSMUST00000207837 Gm44541 TEC Interval_98479 chr2 152698390 152698598 + 0 NA intron (ENSMUSG00000019188.16, intron 10 of 11) protein_coding-intron (ENSMUSG00000019188.16, intron 9 of 10) 11459 ENSMUSG00000042814.8 ENSMUSG00000042814 ENSMUST00000062148 Mcts2 protein_coding Interval_20758 chr10 120787486 120788167 + 0 NA intron (ENSMUSG00000051236.13, intron 5 of 5) protein_coding-intron (ENSMUSG00000051236.13, intron 6 of 6) -12851 ENSMUSG00000086444.2 ENSMUSG00000086444 ENSMUST00000156090 Gm15961 antisense Interval_123347 chr5 31602110 31602746 + 0 NA intron (ENSMUSG00000106918.3, intron 1 of 1) processed_transcript-intron (ENSMUSG00000105617.4, intron 1 of 2) 3695 ENSMUSG00000106918.3 ENSMUSG00000106918 ENSMUST00000202690 Mrpl33 protein_coding Interval_44138 chr13 41152027 41152229 + 0 NA intron (ENSMUSG00000038651.15, intron 3 of 9) protein_coding-intron (ENSMUSG00000038651.15, intron 19 of 28) -1260 ENSMUSG00000038651.15 ENSMUSG00000038651 ENSMUST00000145810 Sycp2l protein_coding Interval_49715 chr13 114202694 114203846 + 0 NA Intergenic Intergenic -23841 ENSMUSG00000104314.1 ENSMUSG00000104314 ENSMUST00000195644 Gm37907 TEC Interval_35114 chr12 17396975 17397459 + 0 NA intron (ENSMUSG00000061458.9, intron 13 of 20) protein_coding-intron (ENSMUSG00000061458.9, intron 13 of 20) -39401 ENSMUSG00000113246.1 ENSMUSG00000113246 ENSMUST00000220527 Gm36752 lincRNA Interval_156655 chr8 56520520 56521674 + 0 NA TTS (ENSMUSG00000077585.1) snoRNA-TTS (ENSMUSG00000077585.1) 406 ENSMUSG00000077585.1 ENSMUSG00000077585 ENSMUST00000104397 Gm24375 snoRNA Interval_37466 chr12 69164435 69165282 + 0 NA Intergenic Intergenic -3963 ENSMUSG00000034883.9 ENSMUSG00000034883 ENSMUST00000222382 Lrr1 protein_coding Interval_138150 chr6 85493257 85493452 + 0 NA intron (ENSMUSG00000047013.15, intron 1 of 13) protein_coding-intron (ENSMUSG00000047013.15, intron 1 of 12) 9504 ENSMUSG00000047013.15 ENSMUSG00000047013 ENSMUST00000161546 Fbxo41 protein_coding Interval_124843 chr5 56350409 56350767 + 0 NA Intergenic Intergenic -63622 ENSMUSG00000106326.1 ENSMUSG00000106326 ENSMUST00000197497 Gm42977 transcribed_processed_pseudogene Interval_124594 chr5 52140017 52140309 + 0 NA exon (ENSMUSG00000106648.1, exon 1 of 1) TEC-exon (ENSMUSG00000106648.1, exon 1 of 1) 2410 ENSMUSG00000106648.1 ENSMUSG00000106648 ENSMUST00000199653 Gm43176 TEC Interval_124034 chr5 37616936 37617299 + 0 NA intron (ENSMUSG00000029123.8, intron 3 of 11) protein_coding-intron (ENSMUSG00000029123.8, intron 3 of 11) 100054 ENSMUSG00000029123.8 ENSMUSG00000029123 ENSMUST00000094836 Stk32b protein_coding Interval_108195 chr3 122413737 122414404 + 0 NA intron (ENSMUSG00000028121.8, intron 6 of 6) protein_coding-intron (ENSMUSG00000028121.8, intron 6 of 6) -5687 ENSMUSG00000028121.8 ENSMUSG00000028121 ENSMUST00000197959 Bcar3 protein_coding Interval_61093 chr15 79196255 79196746 + 0 NA intron (ENSMUSG00000075555.12, intron 1 of 2) processed_transcript-intron (ENSMUSG00000075555.12, intron 1 of 4) 23780 ENSMUSG00000075555.12 ENSMUSG00000075555 ENSMUST00000148028 Gm10863 processed_transcript Interval_151278 chr7 120624008 120624197 + 0 NA promoter-TSS (ENSMUSG00000108911.1) processed_pseudogene-promoter-TSS (ENSMUSG00000108911.1) -147 ENSMUSG00000108911.1 ENSMUSG00000108911 ENSMUST00000207518 Gm45113 processed_pseudogene Interval_62685 chr15 96257552 96258364 + 0 NA intron (ENSMUSG00000097536.2, intron 1 of 6) lincRNA-intron (ENSMUSG00000097536.2, intron 1 of 6) -3971 ENSMUSG00000097619.8 ENSMUSG00000097619 ENSMUST00000229950 4833422M21Rik processed_transcript Interval_163668 chr9 23612509 23612841 + 0 NA Intergenic Intergenic -163817 ENSMUSG00000111041.1 ENSMUSG00000111041 ENSMUST00000215669 Gm3011 processed_pseudogene Interval_16541 chr10 63477325 63477539 + 0 NA intron (ENSMUSG00000060843.11, intron 1 of 17) protein_coding-intron (ENSMUSG00000060843.11, intron 1 of 17) -55643 ENSMUSG00000048185.5 ENSMUSG00000048185 ENSMUST00000054760 Gm7075 protein_coding Interval_21056 chr10 125667890 125668383 + 0 NA Intergenic Intergenic 155605 ENSMUSG00000112100.1 ENSMUSG00000112100 ENSMUST00000219250 Gm9102 processed_pseudogene Interval_84422 chr19 10797776 10799325 + 0 NA exon (ENSMUSG00000024670.17, exon 1 of 9) protein_coding-exon (ENSMUSG00000024670.17, exon 1 of 9) 16635 ENSMUSG00000067577.8 ENSMUSG00000067577 ENSMUST00000186052 A430093F15Rik processed_transcript Interval_138123 chr6 85332425 85334030 + 0 NA promoter-TSS (ENSMUSG00000033720.12) protein_coding-promoter-TSS (ENSMUSG00000033720.12) 195 ENSMUSG00000033720.12 ENSMUSG00000033720 ENSMUST00000203035 Sfxn5 protein_coding Interval_148315 chr7 80461002 80461308 + 0 NA promoter-TSS (ENSMUSG00000030528.12) protein_coding-promoter-TSS (ENSMUSG00000030528.12) -331 ENSMUSG00000030528.12 ENSMUSG00000030528 ENSMUST00000205584 Blm protein_coding Interval_112060 chr4 33823652 33824407 + 0 NA Intergenic Intergenic -100564 ENSMUSG00000044288.6 ENSMUSG00000044288 ENSMUST00000084736 Cnr1 protein_coding Interval_67755 chr16 56879858 56881586 + 0 NA intron (ENSMUSG00000022754.6, intron 1 of 5) protein_coding-intron (ENSMUSG00000022754.6, intron 1 of 5) -5856 ENSMUSG00000084999.2 ENSMUSG00000084999 ENSMUST00000211219 Gm15839 antisense Interval_106556 chr3 97196348 97197041 + 0 NA Intergenic Intergenic 37598 ENSMUSG00000028093.15 ENSMUSG00000028093 ENSMUST00000198329 Acp6 protein_coding Interval_68115 chr16 65248406 65248777 + 0 NA Intergenic Intergenic -52142 ENSMUSG00000116833.1 ENSMUSG00000116833 ENSMUST00000232619 Gm9584 processed_pseudogene Interval_26348 chr11 56962989 56963307 + 0 NA Intergenic Intergenic -213370 ENSMUSG00000020524.16 ENSMUSG00000020524 ENSMUST00000173531 Gria1 protein_coding Interval_101677 chr3 8865717 8866696 + 0 NA intron (ENSMUSG00000040269.5, intron 2 of 2) protein_coding-intron (ENSMUSG00000040269.5, intron 2 of 2) -14993 ENSMUSG00000081594.1 ENSMUSG00000081594 ENSMUST00000120582 Gm15467 processed_pseudogene Interval_28899 chr11 79145500 79146947 + 0 NA exon (ENSMUSG00000018334.18, exon 1 of 19) protein_coding-exon (ENSMUSG00000018334.18, exon 1 of 19) -66573 ENSMUSG00000081000.1 ENSMUSG00000081000 ENSMUST00000121698 Gm11200 processed_pseudogene Interval_62023 chr15 85947338 85948238 + 0 NA intron (ENSMUSG00000016028.11, intron 4 of 33) protein_coding-intron (ENSMUSG00000016028.11, intron 5 of 34) -45589 ENSMUSG00000016028.11 ENSMUSG00000016028 ENSMUST00000227450 Celsr1 protein_coding Interval_133722 chr6 9747163 9747908 + 0 NA Intergenic Intergenic 425319 ENSMUSG00000107459.1 ENSMUSG00000107459 ENSMUST00000203122 Gm5110 processed_pseudogene Interval_102116 chr3 17860839 17861412 + 0 NA Intergenic Intergenic -57378 ENSMUSG00000087893.1 ENSMUSG00000087893 ENSMUST00000157268 Gm23441 snRNA Interval_80466 chr18 42416260 42417310 + 0 NA Intergenic Intergenic 21710 ENSMUSG00000024497.4 ENSMUSG00000024497 ENSMUST00000237247 Pou4f3 protein_coding Interval_97753 chr2 143835524 143836476 + 0 NA intron (ENSMUSG00000027420.13, intron 5 of 7) protein_coding-intron (ENSMUSG00000027420.13, intron 5 of 7) -19649 ENSMUSG00000082987.1 ENSMUSG00000082987 ENSMUST00000120038 Rps13-ps6 processed_pseudogene Interval_169816 chr9 102130147 102130467 + 0 NA intron (ENSMUSG00000032537.15, intron 3 of 4) protein_coding-intron (ENSMUSG00000032537.15, intron 3 of 15) 2419 ENSMUSG00000065107.1 ENSMUSG00000065107 ENSMUST00000083173 n-R5s88 rRNA Interval_37011 chr12 56345081 56346501 + 0 NA promoter-TSS (ENSMUSG00000021028.8) protein_coding-promoter-TSS (ENSMUSG00000021028.8) 44 ENSMUSG00000021028.8 ENSMUSG00000021028 ENSMUST00000218118 Mbip protein_coding Interval_96455 chr2 123389228 123389442 + 0 NA Intergenic Intergenic 115411 ENSMUSG00000084372.1 ENSMUSG00000084372 ENSMUST00000119363 Gm13988 processed_pseudogene Interval_98259 chr2 150588979 150589887 + 0 NA intron (ENSMUSG00000033096.7, intron 3 of 4) protein_coding-intron (ENSMUSG00000033096.7, intron 4 of 8) -16800 ENSMUSG00000086407.1 ENSMUSG00000086407 ENSMUST00000156345 Gm14123 processed_transcript Interval_113652 chr4 57271188 57272342 + 0 NA intron (ENSMUSG00000038764.14, intron 1 of 25) protein_coding-intron (ENSMUSG00000038764.14, intron 1 of 25) -28331 ENSMUSG00000085654.1 ENSMUSG00000085654 ENSMUST00000129102 Gm12536 lincRNA Interval_22095 chr11 6323627 6323871 + 0 NA intron (ENSMUSG00000020456.17, intron 4 of 22) protein_coding-intron (ENSMUSG00000020456.17, intron 4 of 22) 31764 ENSMUSG00000020456.17 ENSMUSG00000020456 ENSMUST00000081894 Ogdh protein_coding Interval_23314 chr11 21308434 21308620 + 0 NA intron (ENSMUSG00000020128.15, intron 11 of 18) protein_coding-intron (ENSMUSG00000020128.15, intron 15 of 22) -3978 ENSMUSG00000020128.15 ENSMUSG00000020128 ENSMUST00000153159 Vps54 protein_coding Interval_102824 chr3 31596446 31597185 + 0 NA Intergenic Intergenic 93770 ENSMUSG00000103499.5 ENSMUSG00000103499 ENSMUST00000192046 Gm6558 transcribed_unprocessed_pseudogene Interval_40558 chr12 105733694 105736152 + 0 NA exon (ENSMUSG00000041323.6, exon 7 of 18) protein_coding-exon (ENSMUSG00000041323.6, exon 7 of 18) 16067 ENSMUSG00000041323.6 ENSMUSG00000041323 ENSMUST00000220702 Ak7 protein_coding Interval_156309 chr8 47307699 47309099 + 0 NA intron (ENSMUSG00000038143.16, intron 7 of 7) protein_coding-intron (ENSMUSG00000038143.16, intron 1 of 4) -81233 ENSMUSG00000109606.1 ENSMUSG00000109606 ENSMUST00000211539 Gm45537 TEC Interval_116916 chr4 118214592 118215539 + 0 NA intron (ENSMUSG00000033295.14, intron 14 of 24) protein_coding-intron (ENSMUSG00000033295.14, intron 22 of 32) -4501 ENSMUSG00000098596.1 ENSMUSG00000098596 ENSMUST00000184953 Mir7226 miRNA Interval_84068 chr19 7032884 7033247 + 0 NA intron (ENSMUSG00000024966.9, intron 4 of 13) protein_coding-intron (ENSMUSG00000024966.9, intron 4 of 13) 6902 ENSMUSG00000024966.9 ENSMUSG00000024966 ENSMUST00000025918 Stip1 protein_coding Interval_124442 chr5 47287084 47287868 + 0 NA Intergenic Intergenic 133825 ENSMUSG00000104660.1 ENSMUSG00000104660 ENSMUST00000196294 Gm43601 TEC Interval_80420 chr18 42053443 42054261 + 0 NA exon (ENSMUSG00000057719.11, exon 1 of 9) protein_coding-exon (ENSMUSG00000057719.11, exon 1 of 9) -54803 ENSMUSG00000073574.4 ENSMUSG00000073574 ENSMUST00000097591 Grxcr2 protein_coding Interval_88422 chr2 4987621 4988036 + 0 NA Intergenic Intergenic 7010 ENSMUSG00000026669.14 ENSMUSG00000026669 ENSMUST00000125851 Mcm10 protein_coding Interval_2878 chr1 47180940 47181967 + 0 NA intron (ENSMUSG00000101447.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000101447.1, intron 1 of 2) 27992 ENSMUSG00000101447.1 ENSMUSG00000101447 ENSMUST00000190006 Gm28826 lincRNA Interval_90360 chr2 29977443 29977692 + 0 NA promoter-TSS (ENSMUSG00000057738.14) protein_coding-promoter-TSS (ENSMUSG00000057738.14) -2510 ENSMUSG00000057738.14 ENSMUSG00000057738 ENSMUST00000201758 Sptan1 protein_coding Interval_174800 chrX 166764116 166764557 + 0 NA Intergenic Intergenic -89875 ENSMUSG00000067147.7 ENSMUSG00000067147 ENSMUST00000118791 Rpl7a-ps11 processed_pseudogene Interval_111469 chr4 21879256 21880431 + 0 NA intron (ENSMUSG00000028247.2, intron 1 of 6) protein_coding-intron (ENSMUSG00000028247.2, intron 1 of 6) -18869 ENSMUSG00000028247.2 ENSMUSG00000028247 ENSMUST00000142244 Coq3 protein_coding Interval_4223 chr1 71707776 71707951 + 0 NA Intergenic Intergenic 2192 ENSMUSG00000101834.1 ENSMUSG00000101834 ENSMUST00000191383 Gm5829 processed_pseudogene Interval_15690 chr10 53596337 53597868 + 0 NA promoter-TSS (ENSMUSG00000019857.7) protein_coding-promoter-TSS (ENSMUSG00000019857.7) -350 ENSMUSG00000019857.7 ENSMUSG00000019857 ENSMUST00000218025 Asf1a protein_coding Interval_105279 chr3 84491403 84492689 + 0 NA Intergenic Intergenic -11653 ENSMUSG00000041842.15 ENSMUSG00000041842 ENSMUST00000131065 Fhdc1 protein_coding Interval_130882 chr5 133222785 133223078 + 0 NA Intergenic Intergenic -220411 ENSMUSG00000106097.1 ENSMUSG00000106097 ENSMUST00000198611 Gm42625 TEC Interval_65640 chr16 24483260 24483792 + 0 NA intron (ENSMUSG00000033306.15, intron 3 of 6) protein_coding-intron (ENSMUSG00000033306.15, intron 3 of 12) -45868 ENSMUSG00000116875.1 ENSMUSG00000116875 ENSMUST00000231737 Morf4l1-ps1 processed_pseudogene Interval_55429 chr14 87140641 87141838 + 0 NA promoter-TSS (ENSMUSG00000022021.14) protein_coding-promoter-TSS (ENSMUSG00000022021.14) -4 ENSMUSG00000022021.14 ENSMUSG00000022021 ENSMUST00000226134 Diaph3 protein_coding Interval_139823 chr6 109246430 109247060 + 0 NA Intergenic Intergenic 32503 ENSMUSG00000107641.1 ENSMUSG00000107641 ENSMUST00000205246 Gm32858 processed_pseudogene Interval_5747 chr1 91412385 91414491 + 0 NA promoter-TSS (ENSMUSG00000067071.8) protein_coding-promoter-TSS (ENSMUSG00000067071.8) -230 ENSMUSG00000067071.8 ENSMUSG00000067071 ENSMUST00000150520 Hes6 protein_coding Interval_95349 chr2 106831953 106833033 + 0 NA intron (ENSMUSG00000016386.15, intron 4 of 6) protein_coding-intron (ENSMUSG00000016386.15, intron 4 of 6) 23157 ENSMUSG00000105450.1 ENSMUSG00000105450 ENSMUST00000199948 Gm22813 scaRNA Interval_47396 chr13 83262738 83262954 + 0 NA Intergenic Intergenic -73137 ENSMUSG00000114735.1 ENSMUSG00000114735 ENSMUST00000224835 Gm48156 processed_pseudogene Interval_168099 chr9 76436825 76437405 + 0 NA Intergenic Intergenic -113259 ENSMUSG00000032360.16 ENSMUSG00000032360 ENSMUST00000184200 Hcrtr2 protein_coding Interval_167685 chr9 71915794 71917203 + 0 NA intron (ENSMUSG00000032228.16, intron 3 of 14) protein_coding-intron (ENSMUSG00000032228.16, intron 8 of 19) 7655 ENSMUSG00000098761.1 ENSMUSG00000098761 ENSMUST00000184135 Gm18821 processed_pseudogene Interval_72735 chr17 31826464 31827187 + 0 NA Intergenic Intergenic 24750 ENSMUSG00000024042.7 ENSMUSG00000024042 ENSMUST00000234142 Sik1 protein_coding Interval_145961 chr7 42679354 42680756 + 0 NA intron (ENSMUSG00000069727.5, intron 1 of 3) protein_coding-intron (ENSMUSG00000069727.5, intron 1 of 3) 12687 ENSMUSG00000069727.5 ENSMUSG00000069727 ENSMUST00000206356 Zfp975 protein_coding Interval_69451 chr16 93549096 93550215 + 0 NA Intergenic Intergenic 17267 ENSMUSG00000116576.1 ENSMUSG00000116576 ENSMUST00000231728 Gm49725 lincRNA Interval_16845 chr10 69176357 69176722 + 0 NA intron (ENSMUSG00000019944.14, intron 2 of 4) protein_coding-intron (ENSMUSG00000019944.14, intron 2 of 4) -25407 ENSMUSG00000111941.1 ENSMUSG00000111941 ENSMUST00000220371 Gm33263 lincRNA Interval_152603 chr7 135064298 135065872 + 0 NA intron (ENSMUSG00000058325.6, intron 29 of 51) protein_coding-intron (ENSMUSG00000058325.6, intron 29 of 51) 66561 ENSMUSG00000077150.1 ENSMUSG00000077150 ENSMUST00000103962 Gm24581 snoRNA Interval_68080 chr16 64881008 64881346 + 0 NA Intergenic Intergenic 28475 ENSMUSG00000054604.7 ENSMUSG00000054604 ENSMUST00000136532 Cggbp1 protein_coding Interval_75275 chr17 65643345 65643800 + 0 NA Intergenic Intergenic -3746 ENSMUSG00000050612.6 ENSMUSG00000050612 ENSMUST00000233702 Txndc2 protein_coding Interval_92233 chr2 57233348 57233827 + 0 NA Intergenic Intergenic -4091 ENSMUSG00000026827.12 ENSMUSG00000026827 ENSMUST00000154612 Gpd2 protein_coding Interval_148170 chr7 79612703 79613751 + 0 NA intron (ENSMUSG00000030549.6, intron 1 of 10) protein_coding-intron (ENSMUSG00000030549.6, intron 1 of 10) -9551 ENSMUSG00000108318.1 ENSMUSG00000108318 ENSMUST00000206746 Gm45170 TEC Interval_157283 chr8 69000549 69000884 + 0 NA intron (ENSMUSG00000110594.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000110594.1, intron 1 of 1) 967 ENSMUSG00000110594.1 ENSMUSG00000110594 ENSMUST00000212717 Gm33103 lincRNA Interval_60857 chr15 77187490 77188631 + 0 NA intron (ENSMUSG00000033565.18, intron 1 of 3) protein_coding-intron (ENSMUSG00000033565.18, intron 2 of 12) -9796 ENSMUSG00000116185.1 ENSMUSG00000116185 ENSMUST00000230993 Gm49411 TEC Interval_123798 chr5 35592174 35593029 + 0 NA intron (ENSMUSG00000029098.17, intron 7 of 18) protein_coding-intron (ENSMUSG00000029098.17, intron 7 of 18) -3838 ENSMUSG00000055061.5 ENSMUSG00000055061 ENSMUST00000124643 4931431C16Rik antisense Interval_2719 chr1 43854498 43855308 + 0 NA Intergenic Intergenic -27153 ENSMUSG00000057363.12 ENSMUSG00000057363 ENSMUST00000128261 Uxs1 protein_coding Interval_94777 chr2 94245240 94245804 + 0 NA intron (ENSMUSG00000075020.6, intron 2 of 4) lincRNA-intron (ENSMUSG00000075020.6, intron 2 of 5) -4069 ENSMUSG00000065511.1 ENSMUSG00000065511 ENSMUST00000083577 Mir129-2 miRNA Interval_84562 chr19 12764053 12764280 + 0 NA exon (ENSMUSG00000079415.2, exon 2 of 2) protein_coding-exon (ENSMUSG00000079415.2, exon 2 of 2) 1466 ENSMUSG00000079415.2 ENSMUSG00000079415 ENSMUST00000112933 Cntf protein_coding Interval_15884 chr10 58780541 58780935 + 0 NA Intergenic Intergenic 23468 ENSMUSG00000112424.1 ENSMUSG00000112424 ENSMUST00000218604 Gm6494 processed_pseudogene Interval_166303 chr9 58203444 58205023 + 0 NA promoter-TSS (ENSMUSG00000051243.14) protein_coding-promoter-TSS (ENSMUSG00000051243.14) 73 ENSMUSG00000037206.15 ENSMUSG00000037206 ENSMUST00000217578 Islr protein_coding Interval_16155 chr10 61080130 61081689 + 0 NA Intergenic Intergenic -8422 ENSMUSG00000020098.7 ENSMUSG00000020098 ENSMUST00000020298 Pcbd1 protein_coding Interval_70525 chr17 11535719 11535950 + 0 NA intron (ENSMUSG00000023826.16, intron 5 of 10) protein_coding-intron (ENSMUSG00000023826.16, intron 6 of 6) 9964 ENSMUSG00000099618.1 ENSMUSG00000099618 ENSMUST00000185957 Gm28118 processed_pseudogene Interval_122041 chr5 14480954 14481713 + 0 NA Intergenic Intergenic 58519 ENSMUSG00000097976.1 ENSMUSG00000097976 ENSMUST00000182496 Gm26918 antisense Interval_87933 chr19 57193187 57194170 + 0 NA intron (ENSMUSG00000025085.16, intron 1 of 20) protein_coding-intron (ENSMUSG00000025085.16, intron 1 of 25) -80282 ENSMUSG00000117684.1 ENSMUSG00000117684 ENSMUST00000237596 4930449E18Rik antisense Interval_32459 chr11 107668623 107669067 + 0 NA intron (ENSMUSG00000020721.16, intron 12 of 13) protein_coding-intron (ENSMUSG00000020721.16, intron 27 of 31) -2207 ENSMUSG00000020721.16 ENSMUSG00000020721 ENSMUST00000153080 Helz protein_coding Interval_36504 chr12 46721914 46722172 + 0 NA intron (ENSMUSG00000021047.7, intron 3 of 3) protein_coding-intron (ENSMUSG00000021047.7, intron 2 of 4) 5958 ENSMUSG00000112420.1 ENSMUSG00000112420 ENSMUST00000218639 Gm48543 TEC Interval_51784 chr14 32182530 32183065 + 0 NA intron (ENSMUSG00000013701.13, intron 6 of 6) protein_coding-intron (ENSMUSG00000013701.13, intron 6 of 6) 6065 ENSMUSG00000056234.15 ENSMUSG00000056234 ENSMUST00000228779 Ncoa4 protein_coding Interval_37352 chr12 65382024 65382547 + 0 NA Intergenic Intergenic 23685 ENSMUSG00000077590.1 ENSMUSG00000077590 ENSMUST00000104402 Gm26015 snoRNA Interval_115576 chr4 100978769 100979015 + 0 NA intron (ENSMUSG00000028532.14, intron 16 of 26) protein_coding-intron (ENSMUSG00000028532.14, intron 16 of 26) -15818 ENSMUSG00000028532.14 ENSMUSG00000028532 ENSMUST00000136430 Cachd1 protein_coding Interval_32272 chr11 106636108 106636486 + 0 NA Intergenic Intergenic 27029 ENSMUSG00000020717.19 ENSMUSG00000020717 ENSMUST00000124958 Pecam1 protein_coding Interval_115706 chr4 102779721 102779921 + 0 NA intron (ENSMUSG00000028524.21, intron 1 of 4) protein_coding-intron (ENSMUSG00000028524.21, intron 1 of 23) 19356 ENSMUSG00000028524.21 ENSMUSG00000028524 ENSMUST00000140676 Sgip1 protein_coding Interval_44115 chr13 40972005 40973266 + 0 NA intron (ENSMUSG00000086693.1, intron 1 of 4) antisense-intron (ENSMUSG00000086693.1, intron 1 of 4) 19220 ENSMUSG00000021360.16 ENSMUSG00000021360 ENSMUST00000225996 Gcnt2 protein_coding Interval_72526 chr17 30463968 30465870 + 0 NA intron (ENSMUSG00000062202.14, intron 6 of 6) protein_coding-intron (ENSMUSG00000062202.14, intron 6 of 11) 14521 ENSMUSG00000117835.1 ENSMUSG00000117835 ENSMUST00000237696 Gm50250 processed_transcript Interval_122012 chr5 13942695 13943379 + 0 NA Intergenic Intergenic -40163 ENSMUSG00000089244.1 ENSMUSG00000089244 ENSMUST00000158619 Gm24054 miRNA Interval_75013 chr17 60254615 60255169 + 0 NA Intergenic Intergenic -124017 ENSMUSG00000101606.1 ENSMUSG00000101606 ENSMUST00000190184 Gm29051 lincRNA Interval_150840 chr7 115459392 115459648 + 0 NA Intergenic Intergenic 287247 ENSMUSG00000099211.1 ENSMUSG00000099211 ENSMUST00000183778 Gm27684 miRNA Interval_169649 chr9 99694709 99695426 + 0 NA intron (ENSMUSG00000032473.13, intron 4 of 4) protein_coding-intron (ENSMUSG00000032473.13, intron 4 of 4) -13332 ENSMUSG00000089655.1 ENSMUSG00000089655 ENSMUST00000161981 Gm16004 antisense Interval_67425 chr16 48570366 48570928 + 0 NA intron (ENSMUSG00000022652.7, intron 17 of 26) protein_coding-intron (ENSMUSG00000022652.7, intron 17 of 26) 91015 ENSMUSG00000022652.7 ENSMUSG00000022652 ENSMUST00000232195 Morc1 protein_coding Interval_103948 chr3 55413327 55413987 + 0 NA intron (ENSMUSG00000027797.15, intron 2 of 4) protein_coding-intron (ENSMUSG00000027797.15, intron 4 of 16) -12633 ENSMUSG00000105975.4 ENSMUSG00000105975 ENSMUST00000196877 Gm42609 antisense Interval_124341 chr5 44193774 44194095 + 0 NA intron (ENSMUSG00000046985.11, intron 3 of 12) protein_coding-intron (ENSMUSG00000046985.11, intron 4 of 13) 23325 ENSMUSG00000105519.1 ENSMUSG00000105519 ENSMUST00000198875 E430021H15Rik TEC Interval_53277 chr14 55743674 55744138 + 0 NA exon (ENSMUSG00000002332.16, exon 2 of 8) protein_coding-exon (ENSMUSG00000002332.16, exon 2 of 8) -4246 ENSMUSG00000002332.16 ENSMUSG00000002332 ENSMUST00000142043 Dhrs1 protein_coding Interval_33160 chr11 114829559 114830843 + 0 NA Intergenic Intergenic -21339 ENSMUSG00000051043.16 ENSMUSG00000051043 ENSMUST00000152314 Gprc5c protein_coding Interval_29370 chr11 83488719 83488952 + 0 NA promoter-TSS (ENSMUSG00000020680.15) protein_coding-promoter-TSS (ENSMUSG00000020680.15) 15724 ENSMUSG00000020680.15 ENSMUSG00000020680 ENSMUST00000133170 Taf15 protein_coding Interval_154361 chr8 14984337 14984923 + 0 NA intron (ENSMUSG00000071176.10, intron 16 of 18) protein_coding-intron (ENSMUSG00000071176.10, intron 26 of 28) -23044 ENSMUSG00000090024.1 ENSMUSG00000090024 ENSMUST00000162958 Gm16350 antisense Interval_162414 chr8 128363380 128363622 + 0 NA exon (ENSMUSG00000025810.9, exon 3 of 3) protein_coding-exon (ENSMUSG00000025810.9, exon 3 of 3) 4104 ENSMUSG00000025810.9 ENSMUSG00000025810 ENSMUST00000212933 Nrp1 protein_coding Interval_89130 chr2 17059739 17060255 + 0 NA Intergenic Intergenic -80166 ENSMUSG00000082235.3 ENSMUSG00000082235 ENSMUST00000118730 Gm13326 processed_pseudogene Interval_31704 chr11 102342852 102343117 + 0 NA Intergenic Intergenic 23219 ENSMUSG00000006574.15 ENSMUSG00000006574 ENSMUST00000151050 Slc4a1 protein_coding Interval_170708 chr9 110221914 110222164 + 0 NA exon (ENSMUSG00000032481.17, exon 26 of 28) protein_coding-exon (ENSMUSG00000032481.17, exon 26 of 28) -14355 ENSMUSG00000032481.17 ENSMUSG00000032481 ENSMUST00000200426 Smarcc1 protein_coding Interval_50775 chr14 19768877 19769531 + 0 NA intron (ENSMUSG00000021806.4, intron 4 of 16) protein_coding-intron (ENSMUSG00000021806.4, intron 4 of 20) 17920 ENSMUSG00000021806.4 ENSMUSG00000021806 ENSMUST00000224057 Nid2 protein_coding Interval_111898 chr4 32342401 32342654 + 0 NA intron (ENSMUSG00000040270.16, intron 2 of 3) protein_coding-intron (ENSMUSG00000040270.16, intron 2 of 7) -74908 ENSMUSG00000040270.16 ENSMUSG00000040270 ENSMUST00000125263 Bach2 protein_coding Interval_41353 chr12 113023034 113023242 + 0 NA intron (ENSMUSG00000021143.10, intron 1 of 23) protein_coding-intron (ENSMUSG00000021143.10, intron 1 of 23) 8630 ENSMUSG00000021143.10 ENSMUSG00000021143 ENSMUST00000221382 Pacs2 protein_coding Interval_17340 chr10 75978213 75978998 + 0 NA intron (ENSMUSG00000033255.8, intron 3 of 7) protein_coding-intron (ENSMUSG00000033255.8, intron 6 of 13) 4519 ENSMUSG00000033255.8 ENSMUSG00000033255 ENSMUST00000134234 Gm5134 protein_coding Interval_18883 chr10 92298263 92298736 + 0 NA intron (ENSMUSG00000098040.1, intron 2 of 8) lincRNA-intron (ENSMUSG00000098040.1, intron 2 of 8) 39909 ENSMUSG00000111776.1 ENSMUSG00000111776 ENSMUST00000215960 Gm47124 processed_pseudogene Interval_49885 chr13 117628293 117628703 + 0 NA intron (ENSMUSG00000021730.8, intron 1 of 1) protein_coding-intron (ENSMUSG00000021730.8, intron 1 of 7) 26178 ENSMUSG00000021730.8 ENSMUSG00000021730 ENSMUST00000006991 Hcn1 protein_coding Interval_50516 chr14 14554837 14555683 + 0 NA Intergenic Intergenic 33956 ENSMUSG00000114676.1 ENSMUSG00000114676 ENSMUST00000225279 Gm47678 processed_pseudogene Interval_92140 chr2 53990620 53992036 + 0 NA Intergenic Intergenic 94224 ENSMUSG00000075334.2 ENSMUSG00000075334 ENSMUST00000100089 Rprm protein_coding Interval_37602 chr12 70216220 70216936 + 0 NA exon (ENSMUSG00000021069.17, exon 4 of 20) protein_coding-exon (ENSMUSG00000021069.17, exon 4 of 20) -9230 ENSMUSG00000021069.17 ENSMUSG00000021069 ENSMUST00000166609 Pygl protein_coding Interval_67786 chr16 57185530 57185919 + 0 NA intron (ENSMUSG00000022749.8, intron 12 of 18) protein_coding-intron (ENSMUSG00000022749.8, intron 12 of 17) 15448 ENSMUSG00000022749.8 ENSMUSG00000022749 ENSMUST00000227359 Tbc1d23 protein_coding Interval_99029 chr2 156740955 156741578 + 0 NA intron (ENSMUSG00000061689.15, intron 1 of 6) protein_coding-intron (ENSMUSG00000061689.15, intron 1 of 6) 20206 ENSMUSG00000061689.15 ENSMUSG00000061689 ENSMUST00000123730 Dlgap4 protein_coding Interval_7418 chr1 131149181 131150566 + 0 NA Intergenic Intergenic -11628 ENSMUSG00000016526.8 ENSMUSG00000016526 ENSMUST00000189756 Dyrk3 protein_coding Interval_87917 chr19 57097753 57100320 + 0 NA intron (ENSMUSG00000025085.16, intron 6 of 20) protein_coding-intron (ENSMUSG00000025085.16, intron 6 of 25) -161798 ENSMUSG00000025083.18 ENSMUSG00000025083 ENSMUST00000132851 Afap1l2 protein_coding Interval_126048 chr5 77089059 77089595 + 0 NA intron (ENSMUSG00000059325.14, intron 1 of 1) protein_coding-intron (ENSMUSG00000059325.14, intron 2 of 2) -5205 ENSMUSG00000087541.1 ENSMUSG00000087541 ENSMUST00000148568 Hopxos antisense Interval_160805 chr8 112499132 112499430 + 0 NA Intergenic Intergenic 70294 ENSMUSG00000098075.1 ENSMUSG00000098075 ENSMUST00000182027 Gm26994 antisense Interval_99346 chr2 159757331 159757591 + 0 NA Intergenic Intergenic 20746 ENSMUSG00000083451.1 ENSMUSG00000083451 ENSMUST00000119101 Gm11445 processed_pseudogene Interval_32446 chr11 107579718 107581041 + 0 NA intron (ENSMUSG00000020721.16, intron 5 of 32) protein_coding-intron (ENSMUSG00000020721.16, intron 4 of 31) -32006 ENSMUSG00000059706.4 ENSMUSG00000059706 ENSMUST00000147445 A830035A12Rik processed_transcript Interval_41228 chr12 111976424 111977379 + 0 NA intron (ENSMUSG00000054003.13, intron 1 of 35) protein_coding-intron (ENSMUSG00000054003.13, intron 1 of 35) 3242 ENSMUSG00000091402.7 ENSMUSG00000091402 ENSMUST00000185354 Rd3l protein_coding Interval_134182 chr6 22402212 22403265 + 0 NA Intergenic Intergenic -58825 ENSMUSG00000029672.16 ENSMUSG00000029672 ENSMUST00000168965 Fam3c protein_coding Interval_36944 chr12 55504889 55506374 + 0 NA Intergenic Intergenic 7910 ENSMUSG00000112348.1 ENSMUSG00000112348 ENSMUST00000218356 Gm36634 processed_transcript Interval_6837 chr1 119991429 119992102 + 0 NA intron (ENSMUSG00000036962.12, intron 2 of 6) protein_coding-intron (ENSMUSG00000036962.12, intron 1 of 22) 4970 ENSMUSG00000092245.1 ENSMUSG00000092245 ENSMUST00000174509 Gm17973 processed_pseudogene Interval_164428 chr9 36952189 36952876 + 0 NA intron (ENSMUSG00000035934.16, intron 2 of 9) protein_coding-intron (ENSMUSG00000035934.16, intron 5 of 12) -63226 ENSMUSG00000093721.1 ENSMUSG00000093721 ENSMUST00000176020 Gm3896 antisense Interval_124875 chr5 58405964 58406524 + 0 NA Intergenic Intergenic -7984 ENSMUSG00000088796.1 ENSMUSG00000088796 ENSMUST00000158171 Gm22536 snoRNA Interval_122595 chr5 24078597 24079202 + 0 NA Intergenic Intergenic -6345 ENSMUSG00000106118.1 ENSMUSG00000106118 ENSMUST00000197900 Gm18038 processed_pseudogene Interval_151302 chr7 120830267 120831552 + 0 NA intron (ENSMUSG00000109392.1, intron 11 of 11) protein_coding-intron (ENSMUSG00000109392.1, intron 11 of 11) 18544 ENSMUSG00000109392.1 ENSMUSG00000109392 ENSMUST00000208668 Gm5737 protein_coding Interval_70646 chr17 12780025 12780368 + 0 NA intron (ENSMUSG00000078247.5, intron 2 of 2) antisense-intron (ENSMUSG00000078247.5, intron 1 of 1) 9565 ENSMUSG00000089525.1 ENSMUSG00000089525 ENSMUST00000158900 Gm23833 misc_RNA Interval_80665 chr18 45911762 45912216 + 0 NA intron (ENSMUSG00000098284.8, intron 2 of 3) antisense-intron (ENSMUSG00000098284.8, intron 2 of 3) -29018 ENSMUSG00000088649.1 ENSMUSG00000088649 ENSMUST00000158024 Gm26262 snoRNA Interval_158850 chr8 87227815 87228146 + 0 NA intron (ENSMUSG00000098257.1, intron 2 of 4) lincRNA-intron (ENSMUSG00000098257.1, intron 2 of 4) 24954 ENSMUSG00000098257.1 ENSMUSG00000098257 ENSMUST00000183344 Gm27169 lincRNA Interval_22562 chr11 11795944 11796606 + 0 NA intron (ENSMUSG00000035455.12, intron 3 of 3) protein_coding-intron (ENSMUSG00000035455.12, intron 1 of 2) 12687 ENSMUSG00000035455.12 ENSMUSG00000035455 ENSMUST00000150714 Fignl1 protein_coding Interval_85870 chr19 32555003 32555457 + 0 NA intron (ENSMUSG00000118168.1, intron 3 of 3) lincRNA-intron (ENSMUSG00000118168.1, intron 3 of 3) 11882 ENSMUSG00000118168.1 ENSMUSG00000118168 ENSMUST00000237957 Gm36419 lincRNA Interval_82508 chr18 74768338 74768624 + 0 NA intron (ENSMUSG00000025885.18, intron 8 of 8) protein_coding-intron (ENSMUSG00000025885.18, intron 38 of 38) 9988 ENSMUSG00000088689.1 ENSMUSG00000088689 ENSMUST00000158064 Scarna17 scaRNA Interval_83457 chr18 85816191 85816392 + 0 NA Intergenic Intergenic 32438 ENSMUSG00000118241.1 ENSMUSG00000118241 ENSMUST00000237360 Gm5824 processed_pseudogene Interval_41832 chr13 3106676 3107085 + 0 NA intron (ENSMUSG00000091834.2, intron 1 of 3) transcribed_unprocessed_pseudogene-intron (ENSMUSG00000091834.2, intron 1 of 3) 12682 ENSMUSG00000113784.1 ENSMUSG00000113784 ENSMUST00000222294 Gm46400 lincRNA Interval_80028 chr18 36730367 36731104 + 0 NA Intergenic Intergenic -3997 ENSMUSG00000051439.7 ENSMUSG00000051439 ENSMUST00000237042 Cd14 protein_coding Interval_74484 chr17 51742070 51742718 + 0 NA promoter-TSS (ENSMUSG00000023927.15) protein_coding-promoter-TSS (ENSMUSG00000023927.15) 6290 ENSMUSG00000102973.1 ENSMUSG00000102973 ENSMUST00000194215 E430014B02Rik TEC Interval_67260 chr16 45023642 45024225 + 0 NA Intergenic Intergenic -69657 ENSMUSG00000022665.15 ENSMUSG00000022665 ENSMUST00000061050 Ccdc80 protein_coding Interval_78629 chr18 15823846 15824496 + 0 NA Intergenic Intergenic -8623 ENSMUSG00000058064.6 ENSMUSG00000058064 ENSMUST00000079733 Gm10036 processed_pseudogene Interval_66986 chr16 39048860 39049347 + 0 NA Intergenic Intergenic 121894 ENSMUSG00000089607.1 ENSMUSG00000089607 ENSMUST00000158982 Gm22500 snRNA Interval_84 GL456221.1 76257 76653 + 0 NA NA NA NA NA Interval_173892 chrX 107602025 107602451 + 0 NA Intergenic Intergenic 59656 ENSMUSG00000055700.7 ENSMUSG00000055700 ENSMUST00000139758 4933401B06Rik transcribed_processed_pseudogene Interval_79071 chr18 24309279 24309941 + 0 NA Intergenic Intergenic -29756 ENSMUSG00000117570.1 ENSMUSG00000117570 ENSMUST00000234938 Gm38410 lincRNA Interval_90039 chr2 27457291 27457584 + 0 NA intron (ENSMUSG00000026918.16, intron 5 of 11) protein_coding-intron (ENSMUSG00000026918.16, intron 6 of 11) 6679 ENSMUSG00000026918.16 ENSMUSG00000026918 ENSMUST00000126059 Brd3 protein_coding Interval_49109 chr13 108119438 108120418 + 0 NA intron (ENSMUSG00000068184.7, intron 1 of 3) protein_coding-intron (ENSMUSG00000068184.7, intron 1 of 3) 38556 ENSMUSG00000068184.7 ENSMUSG00000068184 ENSMUST00000225830 Ndufaf2 protein_coding Interval_18484 chr10 86589268 86589809 + 0 NA Intergenic Intergenic -3618 ENSMUSG00000112735.1 ENSMUSG00000112735 ENSMUST00000218899 Gm46191 processed_pseudogene Interval_18597 chr10 88327136 88327883 + 0 NA intron (ENSMUSG00000020057.2, intron 5 of 6) protein_coding-intron (ENSMUSG00000020057.2, intron 5 of 6) -17377 ENSMUSG00000112715.1 ENSMUSG00000112715 ENSMUST00000218701 Gm48476 processed_pseudogene Interval_95999 chr2 119064457 119064666 + 0 NA intron (ENSMUSG00000027326.13, intron 6 of 6) protein_coding-intron (ENSMUSG00000027326.13, intron 6 of 7) 17414 ENSMUSG00000027326.13 ENSMUSG00000027326 ENSMUST00000028802 Knl1 protein_coding Interval_149781 chr7 101422113 101422617 + 0 NA intron (ENSMUSG00000110195.1, intron 1 of 30) protein_coding-intron (ENSMUSG00000030653.17, intron 1 of 31) 656 ENSMUSG00000110195.1 ENSMUSG00000110195 ENSMUST00000209315 Pde2a protein_coding Interval_160889 chr8 114673125 114673435 + 0 NA intron (ENSMUSG00000004637.15, intron 1 of 2) protein_coding-intron (ENSMUSG00000004637.15, intron 5 of 8) -31166 ENSMUSG00000089723.1 ENSMUSG00000089723 ENSMUST00000160544 Gm16117 antisense Interval_167013 chr9 64522798 64523024 + 0 NA intron (ENSMUSG00000036466.17, intron 4 of 22) protein_coding-intron (ENSMUSG00000036466.17, intron 4 of 24) 137285 ENSMUSG00000036466.17 ENSMUSG00000036466 ENSMUST00000153934 Megf11 protein_coding Interval_146111 chr7 43986017 43986673 + 0 NA intron (ENSMUSG00000108730.1, intron 2 of 3) unprocessed_pseudogene-intron (ENSMUSG00000108730.1, intron 2 of 3) -1448 ENSMUSG00000108602.1 ENSMUSG00000108602 ENSMUST00000205895 Klk1b10-ps unprocessed_pseudogene Interval_19180 chr10 95322128 95324385 + 0 NA promoter-TSS (ENSMUSG00000045867.10) protein_coding-promoter-TSS (ENSMUSG00000045867.10) 431 ENSMUSG00000045867.10 ENSMUSG00000045867 ENSMUST00000220446 Cradd protein_coding Interval_171377 chr9 117172486 117172860 + 0 NA intron (ENSMUSG00000039607.17, intron 1 of 13) protein_coding-intron (ENSMUSG00000039607.17, intron 1 of 12) -79863 ENSMUSG00000079669.2 ENSMUSG00000079669 ENSMUST00000172075 Gm17396 processed_transcript Interval_139937 chr6 112903979 112904383 + 0 NA intron (ENSMUSG00000030257.16, intron 1 of 21) protein_coding-intron (ENSMUSG00000030257.16, intron 1 of 9) -42856 ENSMUSG00000108103.1 ENSMUSG00000108103 ENSMUST00000204406 Gm44081 lincRNA Interval_6768 chr1 119356778 119357285 + 0 NA intron (ENSMUSG00000101179.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000101179.1, intron 1 of 2) 27831 ENSMUSG00000101179.1 ENSMUSG00000101179 ENSMUST00000186504 Gm29455 lincRNA Interval_63341 chr15 100451005 100451588 + 0 NA Intergenic Intergenic 1612 ENSMUSG00000084688.1 ENSMUSG00000084688 ENSMUST00000122739 n-R5s43 rRNA Interval_138069 chr6 84954887 84955573 + 0 NA intron (ENSMUSG00000033769.16, intron 6 of 6) protein_coding-intron (ENSMUSG00000033769.16, intron 6 of 16) 34107 ENSMUSG00000108012.1 ENSMUSG00000108012 ENSMUST00000204154 Gm44012 antisense Interval_41916 chr13 4366890 4367079 + 0 NA intron (ENSMUSG00000113175.1, intron 3 of 3) transcribed_unprocessed_pseudogene-intron (ENSMUSG00000113175.1, intron 2 of 2) -1697 ENSMUSG00000113004.1 ENSMUSG00000113004 ENSMUST00000221635 Gm47951 processed_pseudogene Interval_127563 chr5 105341329 105341640 + 0 NA intron (ENSMUSG00000092021.8, intron 2 of 6) polymorphic_pseudogene-intron (ENSMUSG00000092021.8, intron 3 of 10) 2445 ENSMUSG00000092021.8 ENSMUSG00000092021 ENSMUST00000171587 Gbp11 polymorphic_pseudogene Interval_21551 chr10 129815108 129815995 + 0 NA Intergenic Intergenic -11155 ENSMUSG00000063173.2 ENSMUSG00000063173 ENSMUST00000076437 Olfr811 protein_coding Interval_62475 chr15 93288993 93289821 + 0 NA intron (ENSMUSG00000022634.9, intron 2 of 3) protein_coding-intron (ENSMUSG00000022634.9, intron 2 of 3) -14228 ENSMUSG00000036197.16 ENSMUSG00000036197 ENSMUST00000057896 Gxylt1 protein_coding Interval_1196 chr1 16871350 16872018 + 0 NA Intergenic Intergenic -26501 ENSMUSG00000101640.1 ENSMUSG00000101640 ENSMUST00000186604 Gm28376 antisense Interval_75505 chr17 67583787 67585642 + 0 NA intron (ENSMUSG00000117029.1, intron 2 of 2) lincRNA-intron (ENSMUSG00000117029.1, intron 2 of 2) 33107 ENSMUSG00000087829.1 ENSMUSG00000087829 ENSMUST00000157204 Gm22277 misc_RNA Interval_28147 chr11 73176523 73177887 + 0 NA promoter-TSS (ENSMUSG00000047260.4) protein_coding-promoter-TSS (ENSMUSG00000047260.4) -46 ENSMUSG00000040158.12 ENSMUSG00000040158 ENSMUST00000108477 Tax1bp3 protein_coding Interval_145611 chr7 35986810 35987057 + 0 NA Intergenic Intergenic -110445 ENSMUSG00000108711.1 ENSMUSG00000108711 ENSMUST00000205504 Gm38991 lincRNA Interval_32392 chr11 107321562 107322796 + 0 NA intron (ENSMUSG00000040430.18, intron 1 of 2) protein_coding-intron (ENSMUSG00000040430.18, intron 1 of 7) -8529 ENSMUSG00000081995.1 ENSMUSG00000081995 ENSMUST00000119399 Gm11719 processed_pseudogene Interval_74610 chr17 53700199 53700539 + 0 NA exon (ENSMUSG00000107430.1, exon 1 of 1) processed_pseudogene-exon (ENSMUSG00000107430.1, exon 1 of 1) 663 ENSMUSG00000107430.1 ENSMUSG00000107430 ENSMUST00000203555 Gm31532 processed_pseudogene Interval_52324 chr14 44983861 44984700 + 0 NA intron (ENSMUSG00000090709.2, intron 1 of 4) antisense-intron (ENSMUSG00000090709.2, intron 1 of 4) -4386 ENSMUSG00000037759.6 ENSMUSG00000037759 ENSMUST00000227198 Ptger2 protein_coding Interval_125002 chr5 63657300 63657966 + 0 NA intron (ENSMUSG00000090061.9, intron 2 of 6) protein_coding-intron (ENSMUSG00000090061.9, intron 1 of 6) -6739 ENSMUSG00000104868.1 ENSMUSG00000104868 ENSMUST00000067917 Gm9954 TEC Interval_80577 chr18 44392591 44393909 + 0 NA intron (ENSMUSG00000024472.9, intron 1 of 1) protein_coding-intron (ENSMUSG00000024472.9, intron 1 of 10) 12748 ENSMUSG00000024472.9 ENSMUSG00000024472 ENSMUST00000025350 Dcp2 protein_coding Interval_114231 chr4 69215992 69217014 + 0 NA Intergenic Intergenic 78618 ENSMUSG00000082553.1 ENSMUSG00000082553 ENSMUST00000120872 Gm11404 processed_pseudogene Interval_78886 chr18 21146102 21146564 + 0 NA intron (ENSMUSG00000042680.8, intron 4 of 4) protein_coding-intron (ENSMUSG00000042680.8, intron 4 of 5) -69224 ENSMUSG00000062962.5 ENSMUSG00000062962 ENSMUST00000084199 Gm6378 processed_pseudogene Interval_48756 chr13 102839808 102840794 + 0 NA intron (ENSMUSG00000034751.17, intron 4 of 27) protein_coding-intron (ENSMUSG00000034751.17, intron 3 of 27) 77866 ENSMUSG00000090329.1 ENSMUSG00000090329 ENSMUST00000170645 Gm17160 antisense Interval_19063 chr10 94147502 94148576 + 0 NA promoter-TSS (ENSMUSG00000005897.14) protein_coding-promoter-TSS (ENSMUSG00000005897.14) 16 ENSMUSG00000005897.14 ENSMUSG00000005897 ENSMUST00000099343 Nr2c1 protein_coding Interval_171697 chr9 120209798 120210388 + 0 NA intron (ENSMUSG00000111360.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000111360.1, intron 1 of 2) -26548 ENSMUSG00000111360.1 ENSMUSG00000111360 ENSMUST00000216718 Gm38642 lincRNA Interval_53613 chr14 60097504 60098068 + 0 NA intron (ENSMUSG00000021983.16, intron 1 of 6) protein_coding-intron (ENSMUSG00000021983.16, intron 1 of 6) 10269 ENSMUSG00000086112.1 ENSMUSG00000086112 ENSMUST00000154835 4930563I02Rik antisense Interval_148135 chr7 79427720 79428849 + 0 NA intron (ENSMUSG00000039187.16, intron 16 of 21) protein_coding-intron (ENSMUSG00000039187.16, intron 18 of 37) -12384 ENSMUSG00000039187.16 ENSMUSG00000039187 ENSMUST00000206121 Fanci protein_coding Interval_41696 chr12 117821805 117822066 + 0 NA intron (ENSMUSG00000021175.15, intron 1 of 4) protein_coding-intron (ENSMUSG00000021175.15, intron 1 of 4) 12416 ENSMUSG00000093544.1 ENSMUSG00000093544 ENSMUST00000175828 Gm20613 processed_pseudogene Interval_102083 chr3 16801062 16801740 + 0 NA Intergenic Intergenic 21911 ENSMUSG00000088644.1 ENSMUSG00000088644 ENSMUST00000158019 Gm26485 snRNA Interval_140749 chr6 121045126 121046292 + 0 NA intron (ENSMUSG00000051586.17, intron 1 of 14) protein_coding-intron (ENSMUSG00000051586.17, intron 1 of 17) -18887 ENSMUSG00000097011.2 ENSMUSG00000097011 ENSMUST00000203697 Gm4651 processed_transcript Interval_34235 chr11 121495045 121496078 + 0 NA intron (ENSMUSG00000039230.14, intron 3 of 3) protein_coding-intron (ENSMUSG00000039230.14, intron 9 of 38) 23772 ENSMUSG00000039238.6 ENSMUSG00000039238 ENSMUST00000092298 Zfp750 protein_coding Interval_150944 chr7 116540526 116541234 + 0 NA TTS (ENSMUSG00000030659.14) protein_coding-TTS (ENSMUSG00000030659.14) -2776 ENSMUSG00000108736.1 ENSMUSG00000108736 ENSMUST00000205445 Gm45151 lincRNA Interval_168505 chr9 82829221 82830674 + 0 NA exon (ENSMUSG00000032251.12, exon 1 of 3) protein_coding-exon (ENSMUSG00000032251.12, exon 1 of 3) 407 ENSMUSG00000032251.12 ENSMUSG00000032251 ENSMUST00000034783 Irak1bp1 protein_coding Interval_72277 chr17 28937587 28938010 + 0 NA TTS (ENSMUSG00000087693.1) antisense-TTS (ENSMUSG00000087693.1) 4466 ENSMUSG00000045378.5 ENSMUSG00000045378 ENSMUST00000232977 Pxt1 protein_coding Interval_11445 chr1 181966130 181966337 + 0 NA intron (ENSMUSG00000022995.16, intron 1 of 13) protein_coding-intron (ENSMUSG00000022995.16, intron 1 of 14) 3690 ENSMUSG00000103317.1 ENSMUSG00000103317 ENSMUST00000191884 Gm38359 TEC Interval_112680 chr4 44033503 44033938 + 0 NA TTS (ENSMUSG00000028479.18) protein_coding-TTS (ENSMUSG00000028479.18) 21077 ENSMUSG00000028478.18 ENSMUSG00000028478 ENSMUST00000107845 Clta protein_coding Interval_40221 chr12 102620016 102620304 + 0 NA intron (ENSMUSG00000057963.9, intron 2 of 4) protein_coding-intron (ENSMUSG00000057963.9, intron 3 of 9) 7480 ENSMUSG00000095174.1 ENSMUSG00000095174 ENSMUST00000178938 Gm20069 antisense Interval_56899 chr14 122962535 122962709 + 0 NA intron (ENSMUSG00000041594.18, intron 5 of 17) protein_coding-intron (ENSMUSG00000041594.18, intron 5 of 17) 10503 ENSMUSG00000085423.1 ENSMUSG00000085423 ENSMUST00000136187 4930594M22Rik antisense Interval_26299 chr11 55940221 55940567 + 0 NA intron (ENSMUSG00000086020.1, intron 1 of 4) antisense-intron (ENSMUSG00000086020.1, intron 1 of 4) 100616 ENSMUSG00000037393.2 ENSMUSG00000037393 ENSMUST00000037682 Nmur2 protein_coding Interval_45233 chr13 53364291 53365718 + 0 NA intron (ENSMUSG00000021468.8, intron 5 of 14) protein_coding-intron (ENSMUSG00000021468.8, intron 5 of 14) 12361 ENSMUSG00000021468.8 ENSMUSG00000021468 ENSMUST00000221709 Sptlc1 protein_coding Interval_85649 chr19 29333336 29335031 + 0 NA exon (ENSMUSG00000039097.5, exon 1 of 1) protein_coding-exon (ENSMUSG00000039097.5, exon 1 of 1) 369 ENSMUSG00000039097.5 ENSMUSG00000039097 ENSMUST00000044143 Rln1 protein_coding Interval_100581 chr2 170252234 170252968 + 0 NA Intergenic Intergenic -32434 ENSMUSG00000084013.1 ENSMUSG00000084013 ENSMUST00000118388 Gm14270 processed_pseudogene Interval_38259 chr12 76752099 76753303 + 0 NA Intergenic Intergenic -15787 ENSMUSG00000090258.7 ENSMUSG00000090258 ENSMUST00000152917 Churc1 protein_coding Interval_22173 chr11 6807873 6808355 + 0 NA Intergenic Intergenic 17695 ENSMUSG00000082897.1 ENSMUSG00000082897 ENSMUST00000121480 Gm11982 processed_pseudogene Interval_141181 chr6 125453977 125454910 + 0 NA Intergenic Intergenic 8581 ENSMUSG00000030342.8 ENSMUSG00000030342 ENSMUST00000140024 Cd9 protein_coding Interval_30930 chr11 97265900 97266102 + 0 NA intron (ENSMUSG00000001441.13, intron 2 of 5) protein_coding-intron (ENSMUSG00000001441.13, intron 2 of 22) -14127 ENSMUSG00000086680.2 ENSMUSG00000086680 ENSMUST00000133160 Gm11592 antisense Interval_165862 chr9 53894444 53896317 + 0 NA Intergenic Intergenic 11296 ENSMUSG00000059830.3 ENSMUSG00000059830 ENSMUST00000077997 Gm16380 processed_pseudogene Interval_86026 chr19 35017452 35017887 + 0 NA Intergenic Intergenic 35008 ENSMUSG00000101966.2 ENSMUSG00000101966 ENSMUST00000186108 Gm5248 processed_pseudogene Interval_18201 chr10 83657924 83658324 + 0 NA Intergenic Intergenic -1147 ENSMUSG00000112072.1 ENSMUSG00000112072 ENSMUST00000218849 Gm47244 processed_pseudogene Interval_22729 chr11 14059310 14059715 + 0 NA Intergenic Intergenic -102567 ENSMUSG00000081631.1 ENSMUSG00000081631 ENSMUST00000121451 Gm12005 processed_pseudogene Interval_46930 chr13 73502391 73502924 + 0 NA promoter-TSS (ENSMUSG00000021608.15) protein_coding-promoter-TSS (ENSMUSG00000021608.15) 30906 ENSMUSG00000021608.15 ENSMUSG00000021608 ENSMUST00000222881 Lpcat1 protein_coding Interval_165910 chr9 54579861 54580404 + 0 NA Intergenic Intergenic -6202 ENSMUSG00000032279.11 ENSMUSG00000032279 ENSMUST00000214136 Idh3a protein_coding Interval_130422 chr5 127493484 127493837 + 0 NA intron (ENSMUSG00000034324.16, intron 3 of 8) protein_coding-intron (ENSMUSG00000034324.16, intron 3 of 8) -59594 ENSMUSG00000034324.16 ENSMUSG00000034324 ENSMUST00000145748 Tmem132c protein_coding Interval_159745 chr8 100468722 100469281 + 0 NA Intergenic Intergenic 30243 ENSMUSG00000110220.1 ENSMUSG00000110220 ENSMUST00000209625 Gm45296 processed_pseudogene Interval_2656 chr1 43032395 43033112 + 0 NA exon (ENSMUSG00000041907.9, exon 1 of 1) protein_coding-exon (ENSMUSG00000041907.9, exon 1 of 1) -4092 ENSMUSG00000089088.1 ENSMUSG00000089088 ENSMUST00000158463 Gm24001 miRNA Interval_36311 chr12 41030000 41030419 + 0 NA intron (ENSMUSG00000056899.10, intron 2 of 2) protein_coding-intron (ENSMUSG00000056899.10, intron 2 of 6) 6083 ENSMUSG00000056899.10 ENSMUSG00000056899 ENSMUST00000080160 Immp2l protein_coding Interval_14313 chr10 30762737 30763802 + 0 NA intron (ENSMUSG00000039697.16, intron 1 of 13) protein_coding-intron (ENSMUSG00000039697.16, intron 2 of 15) 6306 ENSMUSG00000111442.1 ENSMUSG00000111442 ENSMUST00000214553 Gm48334 TEC Interval_22382 chr11 9317219 9318038 + 0 NA intron (ENSMUSG00000004668.14, intron 23 of 61) protein_coding-intron (ENSMUSG00000004668.14, intron 23 of 61) 124177 ENSMUSG00000004668.14 ENSMUSG00000004668 ENSMUST00000151522 Abca13 protein_coding Interval_110838 chr4 8869459 8869758 + 0 NA Intergenic Intergenic 14377 ENSMUSG00000041235.12 ENSMUSG00000041235 ENSMUST00000222546 Chd7 protein_coding Interval_86581 chr19 41863840 41864172 + 0 NA intron (ENSMUSG00000035049.4, intron 33 of 33) protein_coding-intron (ENSMUSG00000035049.4, intron 33 of 33) -15874 ENSMUSG00000047604.3 ENSMUSG00000047604 ENSMUST00000059231 Frat2 protein_coding Interval_34724 chr12 8947656 8948543 + 0 NA exon (ENSMUSG00000020583.4, exon 1 of 8) protein_coding-exon (ENSMUSG00000020583.4, exon 1 of 8) 170 ENSMUSG00000020583.4 ENSMUSG00000020583 ENSMUST00000020899 Matn3 protein_coding Interval_168711 chr9 86199356 86200263 + 0 NA Intergenic Intergenic -23794 ENSMUSG00000111418.1 ENSMUSG00000111418 ENSMUST00000216119 Gm18016 processed_pseudogene Interval_98442 chr2 152384118 152384583 + 0 NA Intergenic Intergenic -7712 ENSMUSG00000059361.6 ENSMUSG00000059361 ENSMUST00000079278 Nrsn2 protein_coding Interval_77207 chr17 87350572 87352750 + 0 NA intron (ENSMUSG00000036918.16, intron 16 of 16) protein_coding-intron (ENSMUSG00000036918.16, intron 15 of 19) 12801 ENSMUSG00000089755.1 ENSMUSG00000089755 ENSMUST00000159031 0610012D04Rik antisense Interval_111717 chr4 26625190 26625596 + 0 NA Intergenic Intergenic -31226 ENSMUSG00000082138.1 ENSMUSG00000082138 ENSMUST00000117653 Gm11905 processed_pseudogene Interval_120196 chr4 144090827 144091100 + 0 NA Intergenic Intergenic -15568 ENSMUSG00000073723.10 ENSMUSG00000073723 ENSMUST00000105761 Gm13102 protein_coding Interval_108967 chr3 133659918 133660239 + 0 NA intron (ENSMUSG00000105952.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000105952.1, intron 1 of 1) 3313 ENSMUSG00000105952.1 ENSMUSG00000105952 ENSMUST00000197904 Gm40153 lincRNA Interval_138953 chr6 93757199 93758388 + 0 NA intron (ENSMUSG00000045095.16, intron 7 of 19) protein_coding-intron (ENSMUSG00000045095.16, intron 7 of 21) -35979 ENSMUSG00000088627.1 ENSMUSG00000088627 ENSMUST00000158002 Gm23035 snRNA Interval_168028 chr9 75473993 75474273 + 0 NA intron (ENSMUSG00000109032.1, intron 3 of 8) transcribed_unprocessed_pseudogene-intron (ENSMUSG00000109032.1, intron 3 of 8) -8718 ENSMUSG00000109032.1 ENSMUSG00000109032 ENSMUST00000209180 Gm7972 transcribed_unprocessed_pseudogene Interval_25304 chr11 46216846 46217113 + 0 NA intron (ENSMUSG00000020340.16, intron 26 of 30) protein_coding-intron (ENSMUSG00000020340.16, intron 26 of 30) -18552 ENSMUSG00000048721.2 ENSMUSG00000048721 ENSMUST00000060185 Fndc9 protein_coding Interval_109307 chr3 138813070 138813694 + 0 NA intron (ENSMUSG00000028152.10, intron 1 of 7) protein_coding-intron (ENSMUSG00000028152.10, intron 1 of 7) 15780 ENSMUSG00000086123.3 ENSMUSG00000086123 ENSMUST00000153140 Gm16060 processed_pseudogene Interval_4269 chr1 72277081 72277419 + 0 NA intron (ENSMUSG00000026189.13, intron 2 of 6) protein_coding-intron (ENSMUSG00000026189.13, intron 2 of 7) 7009 ENSMUSG00000026189.13 ENSMUSG00000026189 ENSMUST00000097698 Pecr protein_coding Interval_77002 chr17 85555771 85556131 + 0 NA Intergenic Intergenic -13248 ENSMUSG00000117344.1 ENSMUSG00000117344 ENSMUST00000234073 Gm5231 processed_pseudogene Interval_69717 chr16 95755856 95756574 + 0 NA TTS (ENSMUSG00000117232.1) lincRNA-TTS (ENSMUSG00000117232.1) 1915 ENSMUSG00000117167.1 ENSMUSG00000117167 ENSMUST00000233819 Gm6599 processed_pseudogene Interval_102663 chr3 29081579 29083600 + 0 NA promoter-TSS (ENSMUSG00000063600.14) protein_coding-promoter-TSS (ENSMUSG00000063600.14) 289 ENSMUSG00000063600.14 ENSMUSG00000063600 ENSMUST00000140288 Egfem1 protein_coding Interval_65787 chr16 28853741 28854160 + 0 NA intron (ENSMUSG00000051065.9, intron 1 of 1) protein_coding-intron (ENSMUSG00000051065.9, intron 1 of 1) -17583 ENSMUSG00000051065.9 ENSMUSG00000051065 ENSMUST00000232571 Mb21d2 protein_coding Interval_134458 chr6 28906403 28906894 + 0 NA intron (ENSMUSG00000001424.14, intron 16 of 16) protein_coding-intron (ENSMUSG00000001424.14, intron 16 of 16) -74986 ENSMUSG00000092090.2 ENSMUSG00000092090 ENSMUST00000164104 Gm3294 lincRNA Interval_96153 chr2 120104173 120104452 + 0 NA intron (ENSMUSG00000027293.13, intron 3 of 3) protein_coding-intron (ENSMUSG00000027293.13, intron 3 of 5) -18634 ENSMUSG00000074899.6 ENSMUSG00000074899 ENSMUST00000156159 Sptbn5 protein_coding Interval_154896 chr8 24921239 24921877 + 0 NA intron (ENSMUSG00000037437.18, intron 4 of 8) protein_coding-intron (ENSMUSG00000037437.18, intron 4 of 19) -16742 ENSMUSG00000088736.1 ENSMUSG00000088736 ENSMUST00000158111 Gm23898 snRNA Interval_56159 chr14 108774539 108774803 + 0 NA Intergenic Intergenic -82028 ENSMUSG00000058430.1 ENSMUSG00000058430 ENSMUST00000080234 Rpl27a-ps2 processed_pseudogene Interval_168518 chr9 82967137 82967425 + 0 NA intron (ENSMUSG00000032253.13, intron 4 of 5) protein_coding-intron (ENSMUSG00000032253.13, intron 4 of 39) -41322 ENSMUSG00000111839.1 ENSMUSG00000111839 ENSMUST00000216894 Gm39383 lincRNA Interval_46057 chr13 60653622 60654370 + 0 NA intron (ENSMUSG00000021559.14, intron 2 of 26) protein_coding-intron (ENSMUSG00000021559.14, intron 2 of 26) 12206 ENSMUSG00000114277.1 ENSMUSG00000114277 ENSMUST00000225897 Gm48583 processed_pseudogene Interval_77818 chr18 4017908 4018534 + 0 NA Intergenic Intergenic 7965 ENSMUSG00000117395.1 ENSMUSG00000117395 ENSMUST00000234528 Gm7378 processed_pseudogene Interval_9832 chr1 162754984 162755460 + 0 NA Intergenic Intergenic -24501 ENSMUSG00000040225.15 ENSMUSG00000040225 ENSMUST00000183286 Prrc2c protein_coding Interval_121965 chr5 12684429 12684859 + 0 NA Intergenic Intergenic -13916 ENSMUSG00000105237.1 ENSMUSG00000105237 ENSMUST00000197223 Gm42580 processed_pseudogene Interval_108483 chr3 127558369 127558894 + 0 NA intron (ENSMUSG00000051278.12, intron 3 of 24) protein_coding-intron (ENSMUSG00000051278.12, intron 3 of 25) -1070 ENSMUSG00000105104.1 ENSMUSG00000105104 ENSMUST00000196949 Gm43729 antisense Interval_116436 chr4 111963076 111964427 + 0 NA Intergenic Intergenic -9176 ENSMUSG00000049214.13 ENSMUSG00000049214 ENSMUST00000142162 Skint7 protein_coding Interval_40346 chr12 104056881 104057244 + 0 NA Intergenic Intergenic -12619 ENSMUSG00000041567.3 ENSMUSG00000041567 ENSMUST00000043915 Serpina12 protein_coding Interval_162676 chr9 7751848 7752068 + 0 NA exon (ENSMUSG00000074516.6, exon 1 of 1) processed_pseudogene-exon (ENSMUSG00000074516.6, exon 1 of 1) 233 ENSMUSG00000074516.6 ENSMUSG00000074516 ENSMUST00000213318 Gm10709 processed_pseudogene Interval_83171 chr18 82529199 82529422 + 0 NA intron (ENSMUSG00000041607.17, intron 3 of 5) protein_coding-intron (ENSMUSG00000041607.17, intron 3 of 6) -5289 ENSMUSG00000061684.6 ENSMUSG00000061684 ENSMUST00000130005 Rpl21-ps8 processed_pseudogene Interval_35146 chr12 17556686 17557914 + 0 NA promoter-TSS (ENSMUSG00000113093.1) processed_transcript-promoter-TSS (ENSMUSG00000113093.1) -5625 ENSMUSG00000113093.1 ENSMUSG00000113093 ENSMUST00000223365 Gm36862 processed_transcript Interval_11140 chr1 179604100 179604824 + 0 NA intron (ENSMUSG00000038949.8, intron 2 of 3) protein_coding-intron (ENSMUSG00000038949.8, intron 4 of 10) 57953 ENSMUSG00000038949.8 ENSMUSG00000038949 ENSMUST00000143270 Cnst protein_coding Interval_128947 chr5 116251587 116252652 + 0 NA intron (ENSMUSG00000086122.1, intron 1 of 1) protein_coding-intron (ENSMUSG00000043913.14, intron 1 of 13) -5542 ENSMUSG00000086055.1 ENSMUSG00000086055 ENSMUST00000126326 Gm13837 antisense Interval_132132 chr5 142879446 142879765 + 0 NA intron (ENSMUSG00000066640.11, intron 3 of 4) protein_coding-intron (ENSMUSG00000066640.11, intron 3 of 4) -1232 ENSMUSG00000097559.1 ENSMUSG00000097559 ENSMUST00000181842 D430018E03Rik sense_intronic Interval_164103 chr9 31504904 31505284 + 0 NA intron (ENSMUSG00000111655.1, intron 1 of 1) bidirectional_promoter_lncRNA-intron (ENSMUSG00000111655.1, intron 1 of 1) -40893 ENSMUSG00000041737.8 ENSMUSG00000041737 ENSMUST00000216875 Tmem45b protein_coding Interval_131399 chr5 136940789 136942142 + 0 NA Intergenic Intergenic -21380 ENSMUSG00000019054.13 ENSMUSG00000019054 ENSMUST00000152658 Fis1 protein_coding Interval_68143 chr16 65646630 65647504 + 0 NA Intergenic Intergenic -33648 ENSMUSG00000116578.1 ENSMUSG00000116578 ENSMUST00000232570 Gm49633 processed_pseudogene Interval_145435 chr7 34739454 34739794 + 0 NA intron (ENSMUSG00000060402.8, intron 2 of 2) protein_coding-intron (ENSMUSG00000060402.8, intron 2 of 3) 14188 ENSMUSG00000060402.8 ENSMUSG00000060402 ENSMUST00000205390 Chst8 protein_coding Interval_127297 chr5 102206617 102207558 + 0 NA Intergenic Intergenic 44796 ENSMUSG00000106189.1 ENSMUSG00000106189 ENSMUST00000196547 Gm42933 processed_pseudogene Interval_55813 chr14 100458854 100460113 + 0 NA promoter-TSS (ENSMUSG00000115821.1) lincRNA-promoter-TSS (ENSMUSG00000115821.1) 60 ENSMUSG00000115821.1 ENSMUSG00000115821 ENSMUST00000227740 6330576A10Rik lincRNA Interval_76757 chr17 83865329 83865611 + 0 NA Intergenic Intergenic -11052 ENSMUSG00000097254.2 ENSMUSG00000097254 ENSMUST00000234697 C430042M11Rik lincRNA Interval_126598 chr5 90639877 90641486 + 0 NA promoter-TSS (ENSMUSG00000029370.10) protein_coding-promoter-TSS (ENSMUSG00000029370.10) -30880 ENSMUSG00000029370.10 ENSMUSG00000029370 ENSMUST00000201436 Rassf6 protein_coding Interval_66269 chr16 32747437 32747648 + 0 NA intron (ENSMUSG00000079620.13, intron 1 of 24) protein_coding-intron (ENSMUSG00000079620.13, intron 1 of 26) 20876 ENSMUSG00000098225.1 ENSMUSG00000098225 ENSMUST00000182938 Gm9556 processed_pseudogene Interval_105868 chr3 89830441 89832062 + 0 NA promoter-TSS (ENSMUSG00000046280.9) protein_coding-promoter-TSS (ENSMUSG00000046280.9) -6638 ENSMUSG00000046280.9 ENSMUSG00000046280 ENSMUST00000197454 She protein_coding Interval_20966 chr10 122845779 122846535 + 0 NA intron (ENSMUSG00000034613.12, intron 4 of 5) protein_coding-intron (ENSMUSG00000034613.12, intron 4 of 9) -49211 ENSMUSG00000034613.12 ENSMUSG00000034613 ENSMUST00000162969 Ppm1h protein_coding Interval_20751 chr10 120735915 120736978 + 0 NA Intergenic Intergenic 4631 ENSMUSG00000103017.1 ENSMUSG00000103017 ENSMUST00000195670 Gm37505 TEC Interval_164048 chr9 31147771 31148897 + 0 NA Intergenic Intergenic 12988 ENSMUSG00000031996.17 ENSMUSG00000031996 ENSMUST00000213273 Aplp2 protein_coding Interval_66567 chr16 35168272 35168498 + 0 NA intron (ENSMUSG00000022840.9, intron 1 of 20) protein_coding-intron (ENSMUSG00000022840.9, intron 1 of 20) 66538 ENSMUSG00000084581.1 ENSMUSG00000084581 ENSMUST00000122632 Gm25179 snRNA Interval_171141 chr9 114736140 114736496 + 0 NA intron (ENSMUSG00000032434.9, intron 1 of 3) protein_coding-intron (ENSMUSG00000032434.9, intron 1 of 3) 5202 ENSMUSG00000032434.9 ENSMUSG00000032434 ENSMUST00000035007 Cmtm6 protein_coding Interval_27301 chr11 65753314 65753898 + 0 NA intron (ENSMUSG00000033352.11, intron 3 of 5) protein_coding-intron (ENSMUSG00000033352.11, intron 2 of 10) -18774 ENSMUSG00000076460.1 ENSMUSG00000076460 ENSMUST00000103261 Mir744 miRNA Interval_140770 chr6 121176091 121177835 + 0 NA Intergenic Intergenic -6935 ENSMUSG00000067825.11 ENSMUSG00000067825 ENSMUST00000125633 Pex26 protein_coding Interval_38773 chr12 82225490 82227066 + 0 NA intron (ENSMUSG00000042700.16, intron 2 of 3) protein_coding-intron (ENSMUSG00000042700.16, intron 1 of 22) 56802 ENSMUSG00000042700.16 ENSMUSG00000042700 ENSMUST00000221327 Sipa1l1 protein_coding Interval_151588 chr7 124434076 124434301 + 0 NA Intergenic Intergenic -58718 ENSMUSG00000087781.1 ENSMUSG00000087781 ENSMUST00000157156 Gm23168 snoRNA Interval_149088 chr7 93054912 93055829 + 0 NA intron (ENSMUSG00000054061.8, intron 1 of 1) antisense-intron (ENSMUSG00000054061.8, intron 1 of 1) -24495 ENSMUSG00000051515.9 ENSMUSG00000051515 ENSMUST00000051179 Fam181b protein_coding Interval_129957 chr5 123298605 123298950 + 0 NA TTS (ENSMUSG00000029442.18) protein_coding-TTS (ENSMUSG00000029442.18) 11547 ENSMUSG00000087063.1 ENSMUSG00000087063 ENSMUST00000133476 Gm15857 antisense Interval_154565 chr8 19606660 19606865 + 0 NA intron (ENSMUSG00000110463.1, intron 4 of 4) lincRNA-intron (ENSMUSG00000110463.1, intron 4 of 4) 26822 ENSMUSG00000081920.2 ENSMUSG00000081920 ENSMUST00000119098 Selenot-ps processed_pseudogene Interval_170941 chr9 112725144 112725913 + 0 NA Intergenic Intergenic 202999 ENSMUSG00000096353.1 ENSMUSG00000096353 ENSMUST00000179604 Gm24957 snoRNA Interval_3365 chr1 57469946 57471028 + 0 NA Intergenic Intergenic 2617 ENSMUSG00000088353.1 ENSMUSG00000088353 ENSMUST00000157728 Gm24014 snRNA Interval_130193 chr5 124843006 124843285 + 0 NA intron (ENSMUSG00000037979.13, intron 1 of 3) protein_coding-intron (ENSMUSG00000037979.13, intron 1 of 3) 8438 ENSMUSG00000037979.13 ENSMUSG00000037979 ENSMUST00000143268 Ccdc92 protein_coding Interval_133185 chr5 150408822 150409981 + 0 NA promoter-TSS (ENSMUSG00000056602.12) protein_coding-promoter-TSS (ENSMUSG00000056602.12) 32903 ENSMUSG00000118543.1 ENSMUSG00000118543 ENSMUST00000239092 AC154885.1 unprocessed_pseudogene Interval_162575 chr9 4807599 4807829 + 0 NA Intergenic Intergenic -12195 ENSMUSG00000025892.16 ENSMUSG00000025892 ENSMUST00000163309 Gria4 protein_coding Interval_132334 chr5 144254578 144256379 + 0 NA exon (ENSMUSG00000047843.16, exon 1 of 3) protein_coding-exon (ENSMUSG00000047843.16, exon 1 of 3) 253 ENSMUSG00000047843.16 ENSMUSG00000047843 ENSMUST00000056578 Bri3 protein_coding Interval_118126 chr4 129102023 129102925 + 0 NA Intergenic Intergenic -4395 ENSMUSG00000028786.15 ENSMUSG00000028786 ENSMUST00000148979 Tmem54 protein_coding Interval_125056 chr5 64149041 64150330 + 0 NA Intergenic Intergenic 5437 ENSMUSG00000087954.1 ENSMUSG00000087954 ENSMUST00000157329 Gm22559 snoRNA Interval_119186 chr4 136080999 136082346 + 0 NA Intergenic Intergenic -6700 ENSMUSG00000082877.1 ENSMUSG00000082877 ENSMUST00000121307 Gm13009 processed_pseudogene Interval_136044 chr6 50295308 50295630 + 0 NA TTS (ENSMUSG00000029822.15) protein_coding-TTS (ENSMUSG00000029822.15) -33494 ENSMUSG00000029821.15 ENSMUSG00000029821 ENSMUST00000204700 Gsdme protein_coding Interval_72426 chr17 29740501 29741263 + 0 NA Intergenic Intergenic 23810 ENSMUSG00000117434.1 ENSMUSG00000117434 ENSMUST00000234637 1810014P07Rik bidirectional_promoter_lncRNA Interval_117265 chr4 121147474 121148053 + 0 NA exon (ENSMUSG00000049878.13, exon 8 of 8) protein_coding-exon (ENSMUSG00000049878.13, exon 8 of 8) 13106 ENSMUSG00000064547.1 ENSMUSG00000064547 ENSMUST00000082613 Gm22982 misc_RNA Interval_151863 chr7 127185448 127187953 + 0 NA Intergenic Intergenic -4327 ENSMUSG00000092905.2 ENSMUSG00000092905 ENSMUST00000175164 Gm25735 misc_RNA Interval_42586 chr13 16011667 16012709 + 0 NA intron (ENSMUSG00000041324.14, intron 1 of 4) protein_coding-intron (ENSMUSG00000041324.14, intron 1 of 4) -2287 ENSMUSG00000041324.14 ENSMUSG00000041324 ENSMUST00000164993 Inhba protein_coding Interval_82444 chr18 74048457 74049415 + 0 NA intron (ENSMUSG00000024558.12, intron 1 of 1) protein_coding-intron (ENSMUSG00000024558.12, intron 1 of 5) 15456 ENSMUSG00000024558.12 ENSMUSG00000024558 ENSMUST00000160601 Mapk4 protein_coding Interval_70620 chr17 12403265 12403996 + 0 NA intron (ENSMUSG00000059481.5, intron 11 of 18) protein_coding-intron (ENSMUSG00000059481.5, intron 11 of 18) 24971 ENSMUSG00000059481.5 ENSMUSG00000059481 ENSMUST00000232767 Plg protein_coding Interval_9290 chr1 155873237 155873468 + 0 NA intron (ENSMUSG00000033671.18, intron 30 of 37) protein_coding-intron (ENSMUSG00000033671.18, intron 5 of 8) 8392 ENSMUSG00000103771.1 ENSMUSG00000103771 ENSMUST00000192007 Gm36934 processed_pseudogene Interval_70881 chr17 15549388 15550240 + 0 NA intron (ENSMUSG00000116950.1, intron 1 of 1) protein_coding-intron (ENSMUSG00000051977.16, intron 4 of 4) 1998 ENSMUSG00000116950.1 ENSMUSG00000116950 ENSMUST00000231919 Gm18564 processed_pseudogene Interval_148925 chr7 90114672 90114876 + 0 NA Intergenic Intergenic -6806 ENSMUSG00000062235.6 ENSMUSG00000062235 ENSMUST00000058881 Gm5341 processed_pseudogene Interval_98806 chr2 155133150 155134355 + 0 NA intron (ENSMUSG00000027598.16, intron 1 of 6) protein_coding-intron (ENSMUSG00000027598.16, intron 1 of 24) 243 ENSMUSG00000027598.16 ENSMUSG00000027598 ENSMUST00000123497 Itch protein_coding Interval_18155 chr10 83062980 83063526 + 0 NA intron (ENSMUSG00000034612.7, intron 1 of 2) protein_coding-intron (ENSMUSG00000034612.7, intron 1 of 2) -31558 ENSMUSG00000112084.1 ENSMUSG00000112084 ENSMUST00000218071 Gm10773 TEC Interval_39128 chr12 85305141 85306372 + 0 NA intron (ENSMUSG00000034290.9, intron 19 of 21) protein_coding-intron (ENSMUSG00000034290.9, intron 19 of 21) -17318 ENSMUSG00000008822.15 ENSMUSG00000008822 ENSMUST00000065913 Acyp1 protein_coding Interval_91640 chr2 45108677 45111253 + 0 NA promoter-TSS (ENSMUSG00000052248.16) antisense-promoter-TSS (ENSMUSG00000052248.16) -956 ENSMUSG00000052248.16 ENSMUSG00000052248 ENSMUST00000231441 Zeb2os antisense Interval_6273 chr1 105095851 105096142 + 0 NA Intergenic Intergenic -20458 ENSMUSG00000099669.1 ENSMUSG00000099669 ENSMUST00000187882 Gm29012 lincRNA Interval_118088 chr4 128898957 128899981 + 0 NA intron (ENSMUSG00000041000.8, intron 4 of 5) protein_coding-intron (ENSMUSG00000041000.8, intron 2 of 4) 15889 ENSMUSG00000041000.8 ENSMUSG00000041000 ENSMUST00000035667 Trim62 protein_coding Interval_172217 chrX 9966129 9966486 + 0 NA intron (ENSMUSG00000054453.11, intron 12 of 15) protein_coding-intron (ENSMUSG00000054453.11, intron 13 of 16) -45481 ENSMUSG00000081898.1 ENSMUSG00000081898 ENSMUST00000118774 Gm5754 processed_pseudogene Interval_79094 chr18 24491597 24492444 + 0 NA intron (ENSMUSG00000040446.4, intron 5 of 5) protein_coding-intron (ENSMUSG00000040446.4, intron 6 of 6) 21170 ENSMUSG00000024273.8 ENSMUSG00000024273 ENSMUST00000097646 2700062C07Rik protein_coding Interval_103227 chr3 37204062 37204838 + 0 NA Intergenic Intergenic 21565 ENSMUSG00000084754.1 ENSMUSG00000084754 ENSMUST00000148448 Gm12532 lincRNA Interval_109514 chr3 143316746 143317249 + 0 NA Intergenic Intergenic -13423 ENSMUSG00000106162.1 ENSMUSG00000106162 ENSMUST00000199409 Gm43613 lincRNA Interval_58643 chr15 36775389 36776249 + 0 NA intron (ENSMUSG00000022285.17, intron 3 of 3) protein_coding-intron (ENSMUSG00000022285.17, intron 4 of 6) 21110 ENSMUSG00000022285.17 ENSMUSG00000022285 ENSMUST00000227067 Ywhaz protein_coding Interval_38380 chr12 78181298 78181794 + 0 NA Intergenic Intergenic -12696 ENSMUSG00000099418.3 ENSMUSG00000099418 ENSMUST00000185497 Gm6657 protein_coding Interval_142615 chr6 144282672 144283049 + 0 NA intron (ENSMUSG00000041540.16, intron 4 of 6) protein_coding-intron (ENSMUSG00000041540.16, intron 4 of 13) -73292 ENSMUSG00000041540.16 ENSMUSG00000041540 ENSMUST00000150087 Sox5 protein_coding Interval_174386 chrX 151016790 151019094 + 0 NA promoter-TSS (ENSMUSG00000025266.11) protein_coding-promoter-TSS (ENSMUSG00000025266.11) -620 ENSMUSG00000025266.11 ENSMUSG00000025266 ENSMUST00000156233 Gnl3l protein_coding Interval_160044 chr8 105990598 105991466 + 0 NA promoter-TSS (ENSMUSG00000031901.12) protein_coding-promoter-TSS (ENSMUSG00000031901.12) 690 ENSMUSG00000053687.15 ENSMUSG00000053687 ENSMUST00000149057 Dpep2 protein_coding Interval_161013 chr8 116917188 116917400 + 0 NA intron (ENSMUSG00000014633.15, intron 1 of 4) protein_coding-intron (ENSMUSG00000014633.15, intron 1 of 2) -4453 ENSMUSG00000031756.5 ENSMUSG00000031756 ENSMUST00000212184 Cenpn protein_coding Interval_102906 chr3 32705451 32706106 + 0 NA promoter-TSS (ENSMUSG00000027671.14) protein_coding-promoter-TSS (ENSMUSG00000027671.14) -520 ENSMUSG00000027671.14 ENSMUSG00000027671 ENSMUST00000153779 Actl6a protein_coding Interval_20748 chr10 120716267 120717458 + 0 NA Intergenic Intergenic -14953 ENSMUSG00000103017.1 ENSMUSG00000103017 ENSMUST00000195670 Gm37505 TEC Interval_42850 chr13 20353610 20354873 + 0 NA intron (ENSMUSG00000041112.17, intron 6 of 6) protein_coding-intron (ENSMUSG00000041112.17, intron 14 of 21) 71324 ENSMUSG00000041112.17 ENSMUSG00000041112 ENSMUST00000180767 Elmo1 protein_coding Interval_115770 chr4 103702281 103702539 + 0 NA intron (ENSMUSG00000028519.16, intron 1 of 3) protein_coding-intron (ENSMUSG00000028519.16, intron 1 of 9) -116010 ENSMUSG00000077514.1 ENSMUSG00000077514 ENSMUST00000104326 Gm25877 snoRNA Interval_33542 chr11 117112136 117113206 + 0 NA Intergenic Intergenic -15644 ENSMUSG00000087057.7 ENSMUSG00000087057 ENSMUST00000147186 Gm11730 antisense Interval_144156 chr7 19695971 19696918 + 0 NA TTS (ENSMUSG00000002985.16) protein_coding-TTS (ENSMUSG00000002985.16) 1187 ENSMUSG00000002985.16 ENSMUSG00000002985 ENSMUST00000174191 Apoe protein_coding Interval_52806 chr14 50795085 50795980 + 0 NA intron (ENSMUSG00000071470.4, intron 2 of 2) protein_coding-intron (ENSMUSG00000071470.4, intron 1 of 3) 7716 ENSMUSG00000115769.1 ENSMUSG00000115769 ENSMUST00000226991 Gm48938 processed_pseudogene Interval_149402 chr7 98155483 98155756 + 0 NA intron (ENSMUSG00000035547.14, intron 1 of 2) protein_coding-intron (ENSMUSG00000035547.14, intron 2 of 12) 9343 ENSMUSG00000035547.14 ENSMUSG00000035547 ENSMUST00000129430 Capn5 protein_coding Interval_22989 chr11 18527769 18528140 + 0 NA Intergenic Intergenic -18014 ENSMUSG00000082852.2 ENSMUSG00000082852 ENSMUST00000121061 Gm12021 processed_pseudogene Interval_17623 chr10 78279087 78279691 + 0 NA promoter-TSS (ENSMUSG00000001211.15) protein_coding-promoter-TSS (ENSMUSG00000001211.15) 8636 ENSMUSG00000001211.15 ENSMUSG00000001211 ENSMUST00000146899 Agpat3 protein_coding Interval_126554 chr5 90215156 90215736 + 0 NA exon (ENSMUSG00000035505.14, exon 1 of 2) protein_coding-exon (ENSMUSG00000035505.14, exon 1 of 2) 576 ENSMUSG00000035505.14 ENSMUSG00000035505 ENSMUST00000148480 Cox18 protein_coding Interval_6866 chr1 120207743 120207938 + 0 NA intron (ENSMUSG00000026389.16, intron 4 of 4) protein_coding-intron (ENSMUSG00000026389.16, intron 4 of 4) 57241 ENSMUSG00000026388.15 ENSMUSG00000026388 ENSMUST00000128578 3110009E18Rik protein_coding Interval_52785 chr14 50007974 50009193 + 0 NA Intergenic Intergenic 23660 ENSMUSG00000115556.1 ENSMUSG00000115556 ENSMUST00000227648 Gm49133 processed_pseudogene Interval_144865 chr7 28668237 28668482 + 0 NA intron (ENSMUSG00000108905.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000108905.1, intron 1 of 1) -24680 ENSMUSG00000037463.14 ENSMUSG00000037463 ENSMUST00000127368 Fbxo27 protein_coding Interval_37955 chr12 73321661 73323330 + 0 NA intron (ENSMUSG00000044712.15, intron 5 of 15) protein_coding-intron (ENSMUSG00000044712.15, intron 7 of 7) -32586 ENSMUSG00000113425.1 ENSMUSG00000113425 ENSMUST00000222671 Gm48653 lincRNA Interval_113234 chr4 51018116 51018822 + 0 NA Intergenic Intergenic -171638 ENSMUSG00000084116.1 ENSMUSG00000084116 ENSMUST00000117147 Gm12460 processed_pseudogene Interval_8601 chr1 143730829 143732730 + 0 NA intron (ENSMUSG00000018196.18, intron 5 of 9) protein_coding-intron (ENSMUSG00000018196.18, intron 5 of 9) -11636 ENSMUSG00000018196.18 ENSMUSG00000018196 ENSMUST00000152435 Glrx2 protein_coding Interval_26220 chr11 55203971 55204968 + 0 NA promoter-TSS (ENSMUSG00000020261.15) protein_coding-promoter-TSS (ENSMUSG00000020261.15) 107 ENSMUSG00000020261.15 ENSMUSG00000020261 ENSMUST00000108867 Slc36a1 protein_coding Interval_6241 chr1 103978988 103979499 + 0 NA Intergenic Intergenic 254898 ENSMUSG00000102325.1 ENSMUSG00000102325 ENSMUST00000192862 Gm37789 TEC Interval_132381 chr5 144612253 144612718 + 0 NA Intergenic Intergenic 66583 ENSMUSG00000059991.7 ENSMUSG00000059991 ENSMUST00000071782 Nptx2 protein_coding Interval_123124 chr5 29826894 29827231 + 0 NA Intergenic Intergenic 6245 ENSMUSG00000106551.1 ENSMUSG00000106551 ENSMUST00000198125 Gm1969 processed_pseudogene Interval_40144 chr12 101940924 101941175 + 0 NA intron (ENSMUSG00000021189.11, intron 6 of 8) protein_coding-intron (ENSMUSG00000021189.11, intron 6 of 10) 17194 ENSMUSG00000021189.11 ENSMUSG00000021189 ENSMUST00000159883 Atxn3 protein_coding Interval_82603 chr18 75387343 75389431 + 0 NA intron (ENSMUSG00000025880.11, intron 3 of 3) protein_coding-intron (ENSMUSG00000025880.11, intron 3 of 3) 19397 ENSMUSG00000025880.11 ENSMUSG00000025880 ENSMUST00000172718 Smad7 protein_coding Interval_22616 chr11 12311562 12311731 + 0 NA intron (ENSMUSG00000020173.17, intron 7 of 14) protein_coding-intron (ENSMUSG00000020173.17, intron 7 of 14) -10629 ENSMUSG00000086584.8 ENSMUSG00000086584 ENSMUST00000174550 Gm12002 antisense Interval_147377 chr7 66269919 66272030 + 0 NA intron (ENSMUSG00000015133.17, intron 6 of 14) protein_coding-intron (ENSMUSG00000015133.17, intron 27 of 33) -8504 ENSMUSG00000015133.17 ENSMUSG00000015133 ENSMUST00000154893 Lrrk1 protein_coding Interval_8026 chr1 135274893 135275589 + 0 NA promoter-TSS (ENSMUSG00000041926.15) protein_coding-promoter-TSS (ENSMUSG00000041926.15) 2177 ENSMUSG00000041926.15 ENSMUSG00000041926 ENSMUST00000189615 Rnpep protein_coding Interval_135547 chr6 40333132 40334533 + 0 NA intron (ENSMUSG00000029916.11, intron 2 of 2) protein_coding-intron (ENSMUSG00000029916.11, intron 2 of 15) 8324 ENSMUSG00000029916.11 ENSMUSG00000029916 ENSMUST00000201751 Agk protein_coding Interval_130833 chr5 131082575 131083598 + 0 NA intron (ENSMUSG00000034040.16, intron 4 of 5) protein_coding-intron (ENSMUSG00000034040.16, intron 4 of 10) -40116 ENSMUSG00000106729.1 ENSMUSG00000106729 ENSMUST00000200842 Gm43165 TEC Interval_162388 chr8 127752791 127753894 + 0 NA Intergenic Intergenic 155636 ENSMUSG00000088580.1 ENSMUSG00000088580 ENSMUST00000157955 Gm22968 rRNA Interval_29339 chr11 83298383 83298942 + 0 NA promoter-TSS (ENSMUSG00000035152.14) protein_coding-promoter-TSS (ENSMUSG00000035152.14) 235 ENSMUSG00000018733.10 ENSMUSG00000018733 ENSMUST00000136369 Pex12 protein_coding Interval_90056 chr2 27570725 27573734 + 0 NA Intergenic Intergenic 31803 ENSMUSG00000085929.1 ENSMUSG00000085929 ENSMUST00000132898 Gm13421 processed_transcript Interval_87314 chr19 47587145 47587357 + 0 NA intron (ENSMUSG00000025060.15, intron 1 of 18) protein_coding-intron (ENSMUSG00000025060.15, intron 1 of 17) 15078 ENSMUSG00000118206.1 ENSMUSG00000118206 ENSMUST00000237007 Gm50358 antisense Interval_70842 chr17 15257449 15257638 + 0 NA Intergenic Intergenic -9626 ENSMUSG00000097624.2 ENSMUSG00000097624 ENSMUST00000181658 Gm5091 lincRNA Interval_155412 chr8 33385064 33386638 + 0 NA promoter-TSS (ENSMUSG00000031583.13) protein_coding-promoter-TSS (ENSMUSG00000031583.13) -474 ENSMUSG00000049184.6 ENSMUSG00000049184 ENSMUST00000078058 Purg protein_coding Interval_162943 chr9 13620828 13621585 + 0 NA promoter-TSS (ENSMUSG00000031925.17) protein_coding-promoter-TSS (ENSMUSG00000031925.17) -20 ENSMUSG00000093092.1 ENSMUSG00000093092 ENSMUST00000175351 Gm22643 miRNA Interval_75276 chr17 65648498 65649226 + 0 NA Intergenic Intergenic -9036 ENSMUSG00000050612.6 ENSMUSG00000050612 ENSMUST00000233702 Txndc2 protein_coding Interval_62425 chr15 92415311 92415785 + 0 NA intron (ENSMUSG00000036218.16, intron 3 of 9) protein_coding-intron (ENSMUSG00000036218.16, intron 3 of 9) 71189 ENSMUSG00000097068.2 ENSMUSG00000097068 ENSMUST00000181901 Gm26760 lincRNA Interval_80777 chr18 46992574 46993517 + 0 NA intron (ENSMUSG00000042705.9, intron 5 of 6) protein_coding-intron (ENSMUSG00000042705.9, intron 5 of 6) -7564 ENSMUSG00000087857.1 ENSMUSG00000087857 ENSMUST00000157232 Gm22791 snoRNA Interval_159264 chr8 92460117 92461252 + 0 NA Intergenic Intergenic -5083 ENSMUSG00000110290.1 ENSMUSG00000110290 ENSMUST00000210010 Gm45336 lincRNA Interval_125428 chr5 67046127 67047096 + 0 NA intron (ENSMUSG00000037736.20, intron 20 of 21) protein_coding-intron (ENSMUSG00000037736.20, intron 19 of 20) 7181 ENSMUSG00000080601.1 ENSMUSG00000080601 ENSMUST00000116951 Gm23841 miRNA Interval_170240 chr9 106405374 106407144 + 0 NA Intergenic Intergenic -23303 ENSMUSG00000048758.14 ENSMUSG00000048758 ENSMUST00000214067 Rpl29 protein_coding Interval_43620 chr13 34152783 34155100 + 0 NA Intergenic Intergenic -9023 ENSMUSG00000071451.10 ENSMUSG00000071451 ENSMUST00000147632 Psmg4 protein_coding Interval_13295 chr10 14295650 14296326 + 0 NA promoter-TSS (ENSMUSG00000112679.1) lincRNA-promoter-TSS (ENSMUSG00000112679.1) -975 ENSMUSG00000112679.1 ENSMUSG00000112679 ENSMUST00000219975 Gm40603 lincRNA Interval_35930 chr12 32091470 32091949 + 0 NA Intergenic Intergenic -10859 ENSMUSG00000112569.1 ENSMUSG00000112569 ENSMUST00000219617 Gm33111 lincRNA Interval_65257 chr16 20921503 20922007 + 0 NA Intergenic Intergenic -7214 ENSMUSG00000116659.1 ENSMUSG00000116659 ENSMUST00000232604 Gm6551 unprocessed_pseudogene Interval_102230 chr3 19726303 19726788 + 0 NA Intergenic Intergenic -17225 ENSMUSG00000102261.1 ENSMUSG00000102261 ENSMUST00000194518 Gm18864 processed_pseudogene Interval_34588 chr12 5985035 5985285 + 0 NA TTS (ENSMUSG00000112404.1) lincRNA-TTS (ENSMUSG00000112404.1) -20507 ENSMUSG00000111898.1 ENSMUSG00000111898 ENSMUST00000220422 Gm48608 processed_pseudogene Interval_116758 chr4 117124968 117126781 + 0 NA promoter-TSS (ENSMUSG00000047671.8) protein_coding-promoter-TSS (ENSMUSG00000047671.8) -256 ENSMUSG00000073771.11 ENSMUSG00000073771 ENSMUST00000123346 Btbd19 protein_coding Interval_96168 chr2 120212770 120213998 + 0 NA intron (ENSMUSG00000050211.14, intron 1 of 5) protein_coding-intron (ENSMUSG00000050211.14, intron 1 of 19) 31724 ENSMUSG00000050211.14 ENSMUSG00000050211 ENSMUST00000152263 Pla2g4e protein_coding Interval_126797 chr5 92988634 92989583 + 0 NA Intergenic Intergenic -14723 ENSMUSG00000106930.1 ENSMUSG00000106930 ENSMUST00000200896 Gm6450 processed_pseudogene Interval_17837 chr10 80322971 80324117 + 0 NA promoter-TSS (ENSMUSG00000020131.14) protein_coding-promoter-TSS (ENSMUSG00000020131.14) -418 ENSMUSG00000020131.14 ENSMUSG00000020131 ENSMUST00000135071 Pcsk4 protein_coding Interval_18630 chr10 88691188 88691459 + 0 NA Intergenic Intergenic -8300 ENSMUSG00000004359.16 ENSMUSG00000004359 ENSMUST00000144338 Spic protein_coding Interval_76486 chr17 80542216 80542497 + 0 NA intron (ENSMUSG00000033966.8, intron 6 of 9) protein_coding-intron (ENSMUSG00000033966.8, intron 6 of 9) -11108 ENSMUSG00000117375.1 ENSMUSG00000117375 ENSMUST00000234757 Gm33373 antisense Interval_53002 chr14 53345344 53346038 + 0 NA promoter-TSS (ENSMUSG00000076821.3) TR_V_gene-promoter-TSS (ENSMUSG00000076821.3) -199 ENSMUSG00000076821.3 ENSMUSG00000076821 ENSMUST00000103632 Trav8n-2 TR_V_gene Interval_50497 chr14 14095374 14095899 + 0 NA promoter-TSS (ENSMUSG00000021738.5) protein_coding-promoter-TSS (ENSMUSG00000021738.5) 24470 ENSMUSG00000021737.4 ENSMUSG00000021737 ENSMUST00000147471 Psmd6 protein_coding Interval_106882 chr3 101493800 101494576 + 0 NA Intergenic Intergenic -68535 ENSMUSG00000106137.1 ENSMUSG00000106137 ENSMUST00000196233 Gm42538 antisense Interval_150693 chr7 113434447 113434725 + 0 NA Intergenic Intergenic 14212 ENSMUSG00000110262.1 ENSMUSG00000110262 ENSMUST00000209994 Gm45614 processed_pseudogene Interval_126962 chr5 98410053 98410767 + 0 NA intron (ENSMUSG00000057816.7, intron 2 of 6) protein_coding-intron (ENSMUSG00000057816.7, intron 2 of 5) -43337 ENSMUSG00000106273.1 ENSMUSG00000106273 ENSMUST00000198933 Gm43767 processed_pseudogene Interval_174158 chrX 136867920 136868864 + 0 NA intron (ENSMUSG00000043463.6, intron 1 of 2) protein_coding-intron (ENSMUSG00000043463.6, intron 1 of 2) 363 ENSMUSG00000043463.6 ENSMUSG00000043463 ENSMUST00000058814 Rab9b protein_coding Interval_118096 chr4 128932240 128933742 + 0 NA intron (ENSMUSG00000028789.16, intron 10 of 10) protein_coding-intron (ENSMUSG00000028789.16, intron 10 of 10) -3014 ENSMUSG00000085961.1 ENSMUSG00000085961 ENSMUST00000154515 Gm15904 antisense Interval_7963 chr1 134884418 134884880 + 0 NA intron (ENSMUSG00000073557.12, intron 8 of 24) protein_coding-intron (ENSMUSG00000073557.12, intron 8 of 23) 50507 ENSMUSG00000101168.1 ENSMUSG00000101168 ENSMUST00000188123 Gm28892 antisense Interval_34703 chr12 8786618 8787135 + 0 NA intron (ENSMUSG00000020592.14, intron 2 of 3) protein_coding-intron (ENSMUSG00000020592.14, intron 1 of 4) 15463 ENSMUSG00000020592.14 ENSMUSG00000020592 ENSMUST00000160348 Sdc1 protein_coding Interval_4510 chr1 74712969 74714613 + 0 NA exon (ENSMUSG00000026170.6, exon 1 of 9) protein_coding-exon (ENSMUSG00000026170.6, exon 1 of 9) -21560 ENSMUSG00000026170.6 ENSMUSG00000026170 ENSMUST00000189083 Cyp27a1 protein_coding Interval_142429 chr6 142111304 142112117 + 0 NA TTS (ENSMUSG00000092488.1) processed_pseudogene-TTS (ENSMUSG00000092488.1) 1254 ENSMUSG00000092488.1 ENSMUSG00000092488 ENSMUST00000174516 Gm18159 processed_pseudogene Interval_114305 chr4 72103855 72104721 + 0 NA Intergenic Intergenic 37025 ENSMUSG00000008305.18 ENSMUSG00000008305 ENSMUST00000134225 Tle1 protein_coding Interval_6908 chr1 120590672 120591536 + 0 NA Intergenic Intergenic -11314 ENSMUSG00000058665.8 ENSMUSG00000058665 ENSMUST00000079721 En1 protein_coding Interval_156381 chr8 47832987 47833839 + 0 NA intron (ENSMUSG00000031563.8, intron 21 of 22) protein_coding-intron (ENSMUSG00000031563.8, intron 21 of 22) 8931 ENSMUSG00000038064.7 ENSMUSG00000038064 ENSMUST00000038693 Cldn22 protein_coding Interval_165027 chr9 44013371 44014177 + 0 NA exon (ENSMUSG00000111229.1, exon 3 of 3) lincRNA-exon (ENSMUSG00000111229.1, exon 3 of 3) -15181 ENSMUSG00000110815.1 ENSMUSG00000110815 ENSMUST00000214791 Gm47345 TEC Interval_21764 chr11 4220593 4220887 + 0 NA exon (ENSMUSG00000020424.3, exon 5 of 9) protein_coding-exon (ENSMUSG00000020424.3, exon 5 of 9) 2515 ENSMUSG00000020424.3 ENSMUSG00000020424 ENSMUST00000020699 Castor1 protein_coding Interval_155918 chr8 41025838 41026260 + 0 NA intron (ENSMUSG00000045636.16, intron 3 of 4) protein_coding-intron (ENSMUSG00000045636.16, intron 1 of 9) 8311 ENSMUSG00000084960.1 ENSMUSG00000084960 ENSMUST00000152188 B430010I23Rik antisense Interval_93401 chr2 72831224 72831612 + 0 NA Intergenic Intergenic -17701 ENSMUSG00000085427.7 ENSMUSG00000085427 ENSMUST00000125746 6430710C18Rik lincRNA Interval_136236 chr6 52216794 52218075 + 0 NA promoter-TSS (ENSMUSG00000038236.8) protein_coding-promoter-TSS (ENSMUSG00000038236.8) 2959 ENSMUSG00000038236.8 ENSMUSG00000038236 ENSMUST00000140316 Hoxa7 protein_coding Interval_119289 chr4 136672369 136673935 + 0 NA intron (ENSMUSG00000028664.14, intron 4 of 5) protein_coding-intron (ENSMUSG00000028664.14, intron 8 of 15) 20888 ENSMUSG00000028664.14 ENSMUSG00000028664 ENSMUST00000144573 Ephb2 protein_coding Interval_69591 chr16 94485068 94485541 + 0 NA Intergenic Intergenic -3473 ENSMUSG00000116589.1 ENSMUSG00000116589 ENSMUST00000210205 Gm31323 antisense Interval_79642 chr18 34195179 34196248 + 0 NA Intergenic Intergenic -6774 ENSMUSG00000096804.1 ENSMUSG00000096804 ENSMUST00000157988 Gm23411 snRNA Interval_56724 chr14 121660964 121661361 + 0 NA intron (ENSMUSG00000025558.19, intron 4 of 55) protein_coding-intron (ENSMUSG00000025558.19, intron 4 of 53) 77699 ENSMUSG00000025558.19 ENSMUSG00000025558 ENSMUST00000238406 Dock9 protein_coding Interval_24157 chr11 30783927 30785872 + 0 NA intron (ENSMUSG00000040850.17, intron 1 of 4) protein_coding-intron (ENSMUSG00000040850.17, intron 1 of 46) -29938 ENSMUSG00000083990.1 ENSMUSG00000083990 ENSMUST00000121590 Gm12101 processed_pseudogene Interval_161523 chr8 120940068 120940650 + 0 NA intron (ENSMUSG00000092329.1, intron 1 of 15) protein_coding-intron (ENSMUSG00000092329.1, intron 1 of 15) 60153 ENSMUSG00000097087.1 ENSMUSG00000097087 ENSMUST00000181778 Gm26878 lincRNA Interval_162563 chr9 4374989 4375319 + 0 NA Intergenic Intergenic -1415 ENSMUSG00000041124.11 ENSMUSG00000041124 ENSMUST00000047173 Msantd4 protein_coding Interval_126189 chr5 81708130 81708547 + 0 NA intron (ENSMUSG00000037605.16, intron 16 of 24) protein_coding-intron (ENSMUSG00000037605.16, intron 15 of 24) -27589 ENSMUSG00000106611.1 ENSMUSG00000106611 ENSMUST00000104721 Gm22048 miRNA Interval_165239 chr9 45676378 45677318 + 0 NA intron (ENSMUSG00000032087.11, intron 8 of 32) protein_coding-intron (ENSMUSG00000032087.11, intron 8 of 32) -42036 ENSMUSG00000096202.1 ENSMUSG00000096202 ENSMUST00000179911 Gm22069 snRNA Interval_144284 chr7 24287049 24287220 + 0 NA TTS (ENSMUSG00000118477.1) processed_pseudogene-TTS (ENSMUSG00000118477.1) -1175 ENSMUSG00000118444.1 ENSMUSG00000118444 ENSMUST00000238310 Gm50477 lincRNA Interval_138778 chr6 91776434 91776994 + 0 NA intron (ENSMUSG00000030098.15, intron 17 of 23) protein_coding-intron (ENSMUSG00000030098.15, intron 16 of 22) 19546 ENSMUSG00000030098.15 ENSMUSG00000030098 ENSMUST00000205964 Grip2 protein_coding Interval_14797 chr10 39986698 39987116 + 0 NA promoter-TSS (ENSMUSG00000038528.15) protein_coding-promoter-TSS (ENSMUSG00000038528.15) -268 ENSMUSG00000038528.15 ENSMUSG00000038528 ENSMUST00000170505 Mfsd4b5 protein_coding Interval_94941 chr2 102048607 102049000 + 0 NA intron (ENSMUSG00000085417.1, intron 1 of 4) protein_coding-intron (ENSMUSG00000048058.17, intron 4 of 5) -8784 ENSMUSG00000085110.1 ENSMUSG00000085110 ENSMUST00000146134 Gm13920 antisense Interval_149458 chr7 98734889 98735617 + 0 NA promoter-TSS (ENSMUSG00000108988.1) lincRNA-promoter-TSS (ENSMUSG00000108988.1) -172 ENSMUSG00000108988.1 ENSMUSG00000108988 ENSMUST00000208941 Gm44934 lincRNA Interval_39301 chr12 86524763 86526986 + 0 NA Intergenic Intergenic 55757 ENSMUSG00000021255.17 ENSMUSG00000021255 ENSMUST00000136464 Esrrb protein_coding Interval_141184 chr6 125460833 125461054 + 0 NA intron (ENSMUSG00000030342.8, intron 8 of 8) protein_coding-intron (ENSMUSG00000030342.8, intron 7 of 7) 2081 ENSMUSG00000030342.8 ENSMUSG00000030342 ENSMUST00000140024 Cd9 protein_coding Interval_172247 chrX 11853477 11853660 + 0 NA Intergenic Intergenic 3084 ENSMUSG00000065825.1 ENSMUSG00000065825 ENSMUST00000083891 Gm26314 snRNA Interval_43254 chr13 27542085 27542396 + 0 NA Intergenic Intergenic 22366 ENSMUSG00000006490.3 ENSMUSG00000006490 ENSMUST00000006662 Prl8a9 protein_coding Interval_161669 chr8 121923598 121924434 + 0 NA intron (ENSMUSG00000025317.7, intron 2 of 4) protein_coding-intron (ENSMUSG00000025317.7, intron 3 of 6) 3458 ENSMUSG00000025317.7 ENSMUSG00000025317 ENSMUST00000151462 Car5a protein_coding Interval_5253 chr1 86969363 86969590 + 0 NA intron (ENSMUSG00000053333.15, intron 12 of 20) protein_coding-intron (ENSMUSG00000053333.15, intron 11 of 20) -18794 ENSMUSG00000102956.1 ENSMUSG00000102956 ENSMUST00000195266 Gm37017 TEC Interval_170088 chr9 104344753 104345413 + 0 NA promoter-TSS (ENSMUSG00000100346.2) processed_pseudogene-promoter-TSS (ENSMUSG00000100346.2) -232 ENSMUSG00000100346.2 ENSMUSG00000100346 ENSMUST00000190316 Gm28996 processed_pseudogene Interval_168669 chr9 85698454 85699084 + 0 NA intron (ENSMUSG00000035941.15, intron 24 of 27) protein_coding-intron (ENSMUSG00000035941.15, intron 25 of 28) 19769 ENSMUSG00000035941.15 ENSMUSG00000035941 ENSMUST00000186447 Ibtk protein_coding Interval_111583 chr4 23942169 23942805 + 0 NA Intergenic Intergenic -8533 ENSMUSG00000100395.1 ENSMUSG00000100395 ENSMUST00000188547 Gm28448 lincRNA Interval_161591 chr8 121436542 121438574 + 0 NA intron (ENSMUSG00000092329.1, intron 1 of 15) protein_coding-intron (ENSMUSG00000092329.1, intron 1 of 15) 2578 ENSMUSG00000097438.1 ENSMUSG00000097438 ENSMUST00000181666 Gm26784 lincRNA Interval_14393 chr10 32639954 32641247 + 0 NA intron (ENSMUSG00000069670.8, intron 1 of 3) protein_coding-intron (ENSMUSG00000069670.8, intron 1 of 6) -1114 ENSMUSG00000112914.1 ENSMUSG00000112914 ENSMUST00000220196 Gm47702 TEC Interval_108040 chr3 120914163 120914488 + 0 NA Intergenic Intergenic -27593 ENSMUSG00000098097.7 ENSMUSG00000098097 ENSMUST00000182099 6530403H02Rik lincRNA Interval_117119 chr4 119682359 119683055 + 0 NA Intergenic Intergenic -23926 ENSMUSG00000032978.14 ENSMUSG00000032978 ENSMUST00000044426 Guca2b protein_coding Interval_85 GL456221.1 79721 80157 + 0 NA NA NA NA NA Interval_49147 chr13 108537212 108537487 + 0 NA intron (ENSMUSG00000021699.17, intron 2 of 4) protein_coding-intron (ENSMUSG00000021699.17, intron 1 of 3) -38379 ENSMUSG00000099323.1 ENSMUSG00000099323 ENSMUST00000184594 Gm28016 misc_RNA Interval_164119 chr9 31643111 31644231 + 0 NA promoter-TSS (ENSMUSG00000111153.1) processed_pseudogene-promoter-TSS (ENSMUSG00000111153.1) -99 ENSMUSG00000111153.1 ENSMUSG00000111153 ENSMUST00000217424 Gm18820 processed_pseudogene Interval_97886 chr2 144797557 144797798 + 0 NA Intergenic Intergenic -25979 ENSMUSG00000027431.5 ENSMUSG00000027431 ENSMUST00000028918 Scp2d1 protein_coding Interval_57424 chr15 10694147 10694400 + 0 NA intron (ENSMUSG00000022246.14, intron 1 of 1) protein_coding-intron (ENSMUSG00000022246.14, intron 1 of 17) 19825 ENSMUSG00000022246.14 ENSMUSG00000022246 ENSMUST00000227366 Rai14 protein_coding Interval_82759 chr18 76852997 76853914 + 0 NA Intergenic Intergenic -2950 ENSMUSG00000091519.1 ENSMUSG00000091519 ENSMUST00000166956 Skor2 protein_coding Interval_46196 chr13 62427169 62427537 + 0 NA Intergenic Intergenic 7037 ENSMUSG00000113812.1 ENSMUSG00000113812 ENSMUST00000220732 Gm48699 TEC Interval_171521 chr9 119004665 119006305 + 0 NA intron (ENSMUSG00000047409.13, intron 1 of 5) protein_coding-intron (ENSMUSG00000047409.13, intron 1 of 7) -26311 ENSMUSG00000065513.1 ENSMUSG00000065513 ENSMUST00000083579 Mir26a-1 miRNA Interval_52715 chr14 48907705 48908097 + 0 NA Intergenic Intergenic -26067 ENSMUSG00000115398.1 ENSMUSG00000115398 ENSMUST00000226616 Gm534 processed_transcript Interval_81321 chr18 57965394 57966393 + 0 NA Intergenic Intergenic 38688 ENSMUSG00000024597.11 ENSMUSG00000024597 ENSMUST00000236673 Slc12a2 protein_coding Interval_47932 chr13 94458796 94459018 + 0 NA intron (ENSMUSG00000021686.6, intron 14 of 26) protein_coding-intron (ENSMUSG00000021686.6, intron 14 of 26) -13956 ENSMUSG00000021686.6 ENSMUSG00000021686 ENSMUST00000220505 Ap3b1 protein_coding Interval_18452 chr10 86134238 86134807 + 0 NA intron (ENSMUSG00000059602.14, intron 7 of 8) protein_coding-intron (ENSMUSG00000059602.14, intron 7 of 13) 8695 ENSMUSG00000087256.1 ENSMUSG00000087256 ENSMUST00000132223 Gm15990 antisense Interval_163767 chr9 25497209 25497413 + 0 NA intron (ENSMUSG00000036611.5, intron 2 of 7) protein_coding-intron (ENSMUSG00000036611.5, intron 2 of 7) 14444 ENSMUSG00000036611.5 ENSMUSG00000036611 ENSMUST00000156237 Eepd1 protein_coding Interval_42163 chr13 9385027 9385251 + 0 NA intron (ENSMUSG00000048264.16, intron 1 of 36) protein_coding-intron (ENSMUSG00000048264.16, intron 1 of 38) -27378 ENSMUSG00000112955.1 ENSMUSG00000112955 ENSMUST00000221027 Gm48889 TEC Interval_50420 chr14 12837200 12838679 + 0 NA Intergenic Intergenic -29614 ENSMUSG00000021741.4 ENSMUSG00000021741 ENSMUST00000022260 Gm5457 processed_pseudogene Interval_110790 chr4 8411286 8411556 + 0 NA Intergenic Intergenic 42826 ENSMUSG00000103127.1 ENSMUSG00000103127 ENSMUST00000194755 Gm37386 TEC Interval_58860 chr15 39246771 39250496 + 0 NA intron (ENSMUSG00000037386.16, intron 1 of 25) protein_coding-intron (ENSMUSG00000037386.16, intron 1 of 26) 59945 ENSMUSG00000095297.1 ENSMUSG00000095297 ENSMUST00000102078 Gm25381 miRNA Interval_46169 chr13 62162291 62163330 + 0 NA intron (ENSMUSG00000074867.4, intron 1 of 3) protein_coding-intron (ENSMUSG00000074867.4, intron 1 of 3) 11640 ENSMUSG00000113690.1 ENSMUSG00000113690 ENSMUST00000221857 Gm36501 processed_pseudogene Interval_140015 chr6 113427273 113428599 + 0 NA TTS (ENSMUSG00000030278.11) protein_coding-TTS (ENSMUSG00000030278.11) 5786 ENSMUSG00000095146.2 ENSMUSG00000095146 ENSMUST00000104625 Gm24387 miRNA Interval_70345 chr17 8709578 8710405 + 0 NA intron (ENSMUSG00000023868.17, intron 1 of 3) protein_coding-intron (ENSMUSG00000023868.17, intron 1 of 21) -47027 ENSMUSG00000023868.17 ENSMUSG00000023868 ENSMUST00000115708 Pde10a protein_coding Interval_124378 chr5 45231416 45231614 + 0 NA intron (ENSMUSG00000104781.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000029092.9, intron 4 of 5) 15792 ENSMUSG00000105247.1 ENSMUSG00000105247 ENSMUST00000199282 Gm42519 TEC Interval_10145 chr1 166070185 166070709 + 0 NA Intergenic Intergenic -21968 ENSMUSG00000102484.1 ENSMUSG00000102484 ENSMUST00000191624 Gm37923 lincRNA Interval_148018 chr7 78189965 78190728 + 0 NA exon (ENSMUSG00000059146.12, exon 17 of 17) protein_coding-exon (ENSMUSG00000059146.12, exon 17 of 17) 22353 ENSMUSG00000108630.1 ENSMUSG00000108630 ENSMUST00000205611 Gm44607 TEC Interval_66965 chr16 38849680 38850496 + 0 NA intron (ENSMUSG00000086175.2, intron 4 of 5) antisense-intron (ENSMUSG00000086175.2, intron 4 of 5) 21182 ENSMUSG00000086175.2 ENSMUSG00000086175 ENSMUST00000148657 Gm15802 antisense Interval_112488 chr4 41552599 41553517 + 0 NA intron (ENSMUSG00000028439.14, intron 1 of 5) protein_coding-intron (ENSMUSG00000028439.14, intron 1 of 5) 16480 ENSMUSG00000028439.14 ENSMUSG00000028439 ENSMUST00000146276 Fam219a protein_coding Interval_42677 chr13 17891553 17891794 + 0 NA intron (ENSMUSG00000008859.8, intron 3 of 3) protein_coding-intron (ENSMUSG00000008859.8, intron 3 of 4) -3182 ENSMUSG00000114177.1 ENSMUSG00000114177 ENSMUST00000221786 Gm18362 processed_pseudogene Interval_79184 chr18 25510153 25510716 + 0 NA intron (ENSMUSG00000024268.16, intron 3 of 11) protein_coding-intron (ENSMUSG00000024268.16, intron 3 of 12) -9195 ENSMUSG00000024268.16 ENSMUSG00000024268 ENSMUST00000224143 Celf4 protein_coding Interval_90344 chr2 29898496 29898745 + 0 NA intron (ENSMUSG00000026790.19, intron 4 of 19) protein_coding-intron (ENSMUSG00000026790.19, intron 4 of 16) 8822 ENSMUSG00000026790.19 ENSMUSG00000026790 ENSMUST00000152026 Odf2 protein_coding Interval_10693 chr1 173161955 173162331 + 0 NA Intergenic Intergenic 12972 ENSMUSG00000066680.4 ENSMUSG00000066680 ENSMUST00000085885 Olfr1407-ps1 unprocessed_pseudogene Interval_76588 chr17 81995788 81996130 + 0 NA Intergenic Intergenic -39686 ENSMUSG00000117397.1 ENSMUSG00000117397 ENSMUST00000234632 Gm4599 processed_pseudogene Interval_58750 chr15 37769789 37771413 + 0 NA intron (ENSMUSG00000051359.15, intron 1 of 2) protein_coding-intron (ENSMUSG00000051359.15, intron 1 of 6) -5200 ENSMUSG00000086313.1 ENSMUSG00000086313 ENSMUST00000156011 Gm15940 sense_intronic Interval_65822 chr16 29489689 29490027 + 0 NA intron (ENSMUSG00000038094.15, intron 2 of 29) protein_coding-intron (ENSMUSG00000038094.15, intron 3 of 21) -12632 ENSMUSG00000118569.1 ENSMUSG00000118569 ENSMUST00000239142 AC175464.1 unprocessed_pseudogene Interval_80813 chr18 47432996 47433990 + 0 NA TTS (ENSMUSG00000117474.1) lincRNA-TTS (ENSMUSG00000117474.1) 4285 ENSMUSG00000117474.1 ENSMUSG00000117474 ENSMUST00000234542 Gm50086 lincRNA Interval_126166 chr5 81019494 81022630 + 0 NA promoter-TSS (ENSMUSG00000037605.16) protein_coding-promoter-TSS (ENSMUSG00000037605.16) -119439 ENSMUSG00000083829.1 ENSMUSG00000083829 ENSMUST00000119065 Gm2199 processed_pseudogene Interval_23232 chr11 20727450 20728035 + 0 NA promoter-TSS (ENSMUSG00000049659.15) protein_coding-promoter-TSS (ENSMUSG00000049659.15) -1678 ENSMUSG00000084252.1 ENSMUSG00000084252 ENSMUST00000120008 Gm12036 processed_pseudogene Interval_80373 chr18 40255466 40257364 + 0 NA promoter-TSS (ENSMUSG00000051401.7) protein_coding-promoter-TSS (ENSMUSG00000051401.7) 2080 ENSMUSG00000117674.1 ENSMUSG00000117674 ENSMUST00000236700 Gm31087 antisense Interval_168005 chr9 75363116 75364369 + 0 NA Intergenic Intergenic 9357 ENSMUSG00000111545.1 ENSMUSG00000111545 ENSMUST00000214879 Gm18015 processed_pseudogene Interval_67152 chr16 43943253 43944029 + 0 NA TTS (ENSMUSG00000022701.18) protein_coding-TTS (ENSMUSG00000022701.18) 35521 ENSMUSG00000036304.14 ENSMUSG00000036304 ENSMUST00000165648 Zdhhc23 protein_coding Interval_132559 chr5 146329311 146329644 + 0 NA Intergenic Intergenic 43301 ENSMUSG00000029635.15 ENSMUSG00000029635 ENSMUST00000160924 Cdk8 protein_coding Interval_54460 chr14 69912715 69913617 + 0 NA intron (ENSMUSG00000022085.4, intron 3 of 6) protein_coding-intron (ENSMUSG00000022085.4, intron 3 of 6) 72746 ENSMUSG00000022085.4 ENSMUSG00000022085 ENSMUST00000022678 Pebp4 protein_coding Interval_155457 chr8 33705928 33706577 + 0 NA Intergenic Intergenic 14451 ENSMUSG00000088856.1 ENSMUSG00000088856 ENSMUST00000158231 Gm24727 snoRNA Interval_65030 chr16 18581528 18583101 + 0 NA exon (ENSMUSG00000009097.10, exon 9 of 9) protein_coding-exon (ENSMUSG00000009097.10, exon 9 of 9) 6494 ENSMUSG00000009097.10 ENSMUSG00000009097 ENSMUST00000232589 Tbx1 protein_coding Interval_98778 chr2 154891693 154893373 + 0 NA exon (ENSMUSG00000074656.12, exon 1 of 4) protein_coding-exon (ENSMUSG00000074656.12, exon 1 of 4) 249 ENSMUSG00000074656.12 ENSMUSG00000074656 ENSMUST00000135524 Eif2s2 protein_coding Interval_120873 chr4 151207551 151207748 + 0 NA intron (ENSMUSG00000014592.21, intron 6 of 24) protein_coding-intron (ENSMUSG00000014592.21, intron 6 of 23) 118079 ENSMUSG00000078491.2 ENSMUSG00000078491 ENSMUST00000105667 Gm13090 protein_coding Interval_147804 chr7 73647677 73648543 + 0 NA Intergenic Intergenic -2021 ENSMUSG00000065729.1 ENSMUSG00000065729 ENSMUST00000083795 Gm26176 snRNA Interval_23904 chr11 28134875 28135130 + 0 NA Intergenic Intergenic 88967 ENSMUSG00000083201.1 ENSMUSG00000083201 ENSMUST00000119821 Gm12080 processed_pseudogene Interval_42731 chr13 18663419 18663845 + 0 NA Intergenic Intergenic -18283 ENSMUSG00000114118.1 ENSMUSG00000114118 ENSMUST00000221183 Gm48829 lincRNA Interval_115586 chr4 101136022 101136436 + 0 NA TTS (ENSMUSG00000035275.14) protein_coding-TTS (ENSMUSG00000035275.14) -32579 ENSMUSG00000088551.1 ENSMUSG00000088551 ENSMUST00000157926 Gm22100 snRNA Interval_142824 chr6 146220984 146222896 + 0 NA intron (ENSMUSG00000030287.15, intron 1 of 4) protein_coding-intron (ENSMUSG00000030287.15, intron 45 of 56) 10539 ENSMUSG00000030287.15 ENSMUSG00000030287 ENSMUST00000111673 Itpr2 protein_coding Interval_110371 chr3 157533739 157535143 + 0 NA promoter-TSS (ENSMUSG00000028180.18) protein_coding-promoter-TSS (ENSMUSG00000028180.18) 65 ENSMUSG00000028180.18 ENSMUSG00000028180 ENSMUST00000106063 Zranb2 protein_coding Interval_34346 chr12 3534580 3536174 + 0 NA Intergenic Intergenic -12109 ENSMUSG00000112105.1 ENSMUSG00000112105 ENSMUST00000219719 Rps7-ps2 processed_pseudogene Interval_145702 chr7 37519037 37519288 + 0 NA intron (ENSMUSG00000043456.17, intron 1 of 3) protein_coding-intron (ENSMUSG00000043456.17, intron 4 of 5) -1308 ENSMUSG00000108330.1 ENSMUSG00000108330 ENSMUST00000205702 Gm44882 TEC Interval_160528 chr8 110413880 110415606 + 0 NA intron (ENSMUSG00000059854.8, intron 16 of 25) protein_coding-intron (ENSMUSG00000059854.8, intron 16 of 86) 6724 ENSMUSG00000064393.1 ENSMUSG00000064393 ENSMUST00000082459 Gm23627 snRNA Interval_126640 chr5 91464900 91465598 + 0 NA Intergenic Intergenic -52366 ENSMUSG00000034981.9 ENSMUSG00000034981 ENSMUST00000040576 Parm1 protein_coding Interval_135554 chr6 40378364 40378698 + 0 NA intron (ENSMUSG00000029916.11, intron 1 of 7) protein_coding-intron (ENSMUSG00000029916.11, intron 9 of 15) 52877 ENSMUSG00000037172.14 ENSMUSG00000037172 ENSMUST00000200994 Dennd11 protein_coding Interval_86323 chr19 38753952 38754483 + 0 NA intron (ENSMUSG00000024998.17, intron 11 of 21) protein_coding-intron (ENSMUSG00000024998.17, intron 21 of 31) -1572 ENSMUSG00000101079.1 ENSMUSG00000101079 ENSMUST00000186584 Gm28991 antisense Interval_93913 chr2 79169981 79170354 + 0 NA Intergenic Intergenic -8572 ENSMUSG00000083691.1 ENSMUSG00000083691 ENSMUST00000120603 Gm14465 processed_pseudogene Interval_39854 chr12 99096815 99098085 + 0 NA Intergenic Intergenic -33992 ENSMUSG00000114089.1 ENSMUSG00000114089 ENSMUST00000220675 Gm47116 lincRNA Interval_142493 chr6 142846181 142846422 + 0 NA intron (ENSMUSG00000030283.7, intron 4 of 4) protein_coding-intron (ENSMUSG00000030283.7, intron 4 of 4) 31916 ENSMUSG00000072683.3 ENSMUSG00000072683 ENSMUST00000159599 Gm7457 processed_transcript Interval_58097 chr15 27867232 27867574 + 0 NA promoter-TSS (ENSMUSG00000115161.1) TEC-promoter-TSS (ENSMUSG00000115161.1) -172 ENSMUSG00000115161.1 ENSMUSG00000115161 ENSMUST00000228406 Gm20555 TEC Interval_156469 chr8 48477426 48478020 + 0 NA intron (ENSMUSG00000031561.16, intron 2 of 26) protein_coding-intron (ENSMUSG00000031561.16, intron 2 of 28) 77590 ENSMUSG00000031561.16 ENSMUSG00000031561 ENSMUST00000211812 Tenm3 protein_coding Interval_19363 chr10 97937278 97937735 + 0 NA intron (ENSMUSG00000074776.4, intron 1 of 4) lincRNA-intron (ENSMUSG00000074776.4, intron 1 of 4) 29584 ENSMUSG00000074776.4 ENSMUSG00000074776 ENSMUST00000099324 Gm10754 lincRNA Interval_103455 chr3 41674426 41675149 + 0 NA exon (ENSMUSG00000059834.12, exon 7 of 7) protein_coding-exon (ENSMUSG00000059834.12, exon 7 of 7) -25537 ENSMUSG00000102436.1 ENSMUSG00000102436 ENSMUST00000193690 Gm38047 TEC Interval_146045 chr7 43452380 43453653 + 0 NA intron (ENSMUSG00000004610.4, intron 3 of 5) protein_coding-intron (ENSMUSG00000004610.4, intron 3 of 5) -4481 ENSMUSG00000099210.1 ENSMUSG00000099210 ENSMUST00000184167 Mir7051 miRNA Interval_136389 chr6 54034261 54034892 + 0 NA Intergenic Intergenic 55847 ENSMUSG00000108060.2 ENSMUSG00000108060 ENSMUST00000203047 4921529L05Rik processed_transcript Interval_121519 chr5 3134205 3135438 + 0 NA Intergenic Intergenic 11044 ENSMUSG00000091483.1 ENSMUSG00000091483 ENSMUST00000162728 Gm8715 unprocessed_pseudogene Interval_166469 chr9 59744214 59744579 + 0 NA intron (ENSMUSG00000051705.13, intron 1 of 2) protein_coding-intron (ENSMUSG00000051705.13, intron 1 of 1) 6242 ENSMUSG00000051705.13 ENSMUSG00000051705 ENSMUST00000216045 Senp8 protein_coding Interval_138097 chr6 85147304 85148420 + 0 NA Intergenic Intergenic -1477 ENSMUSG00000107922.1 ENSMUSG00000107922 ENSMUST00000203557 Gm44285 processed_pseudogene Interval_65153 chr16 20218745 20218990 + 0 NA intron (ENSMUSG00000041215.16, intron 3 of 5) protein_coding-intron (ENSMUSG00000041215.16, intron 23 of 29) -3889 ENSMUSG00000041215.16 ENSMUSG00000041215 ENSMUST00000231997 Yeats2 protein_coding Interval_113431 chr4 54965347 54965521 + 0 NA intron (ENSMUSG00000060206.11, intron 1 of 12) protein_coding-intron (ENSMUSG00000060206.11, intron 1 of 12) 20386 ENSMUSG00000060206.11 ENSMUSG00000060206 ENSMUST00000079605 Zfp462 protein_coding Interval_62732 chr15 96524248 96524808 + 0 NA Intergenic Intergenic 26626 ENSMUSG00000116160.1 ENSMUSG00000116160 ENSMUST00000229356 Gm41392 lincRNA Interval_174312 chrX 144325580 144326919 + 0 NA intron (ENSMUSG00000041718.16, intron 3 of 21) protein_coding-intron (ENSMUSG00000041718.16, intron 3 of 6) -4994 ENSMUSG00000080922.1 ENSMUSG00000080922 ENSMUST00000121333 Gm2214 processed_pseudogene Interval_114829 chr4 86021282 86021508 + 0 NA intron (ENSMUSG00000066113.16, intron 2 of 3) protein_coding-intron (ENSMUSG00000066113.16, intron 2 of 3) 22099 ENSMUSG00000064687.1 ENSMUSG00000064687 ENSMUST00000082753 Gm25811 snRNA Interval_37091 chr12 57776415 57776768 + 0 NA Intergenic Intergenic -77529 ENSMUSG00000111886.1 ENSMUSG00000111886 ENSMUST00000217711 Gm47617 processed_pseudogene Interval_99816 chr2 165106441 165107163 + 0 NA Intergenic Intergenic -16052 ENSMUSG00000078935.1 ENSMUSG00000078935 ENSMUST00000109304 1700025C18Rik protein_coding Interval_55502 chr14 89385050 89386411 + 0 NA Intergenic Intergenic -7346 ENSMUSG00000088405.1 ENSMUSG00000088405 ENSMUST00000157780 Gm25886 snRNA Interval_152992 chr7 140613857 140615092 + 0 NA exon (ENSMUSG00000093942.3, exon 3 of 3) protein_coding-exon (ENSMUSG00000093942.3, exon 3 of 3) 13205 ENSMUSG00000093942.3 ENSMUSG00000093942 ENSMUST00000072655 Olfr46 protein_coding Interval_17925 chr10 80857373 80857679 + 0 NA intron (ENSMUSG00000035206.10, intron 1 of 1) protein_coding-intron (ENSMUSG00000035206.10, intron 1 of 14) 405 ENSMUSG00000035206.10 ENSMUSG00000035206 ENSMUST00000219136 Sppl2b protein_coding Interval_100069 chr2 166914331 166915011 + 0 NA promoter-TSS (ENSMUSG00000002718.14) protein_coding-promoter-TSS (ENSMUSG00000002718.14) 8631 ENSMUSG00000002718.14 ENSMUSG00000002718 ENSMUST00000129061 Cse1l protein_coding Interval_74363 chr17 49468189 49468957 + 0 NA intron (ENSMUSG00000040260.8, intron 18 of 23) protein_coding-intron (ENSMUSG00000040260.8, intron 20 of 25) -39333 ENSMUSG00000092268.1 ENSMUSG00000092268 ENSMUST00000172972 Gm20540 processed_transcript Interval_37227 chr12 61609297 61610597 + 0 NA intron (ENSMUSG00000035653.16, intron 1 of 1) protein_coding-intron (ENSMUSG00000035653.16, intron 1 of 3) 30273 ENSMUSG00000113456.1 ENSMUSG00000113456 ENSMUST00000221346 Gm30738 processed_pseudogene Interval_115512 chr4 99609101 99609312 + 0 NA Intergenic Intergenic 7316 ENSMUSG00000083698.1 ENSMUSG00000083698 ENSMUST00000119752 Gm12687 processed_pseudogene Interval_11975 chr1 187982744 187982961 + 0 NA intron (ENSMUSG00000026610.13, intron 3 of 3) protein_coding-intron (ENSMUSG00000026610.13, intron 2 of 7) 26138 ENSMUSG00000103577.1 ENSMUSG00000103577 ENSMUST00000195397 9330162B11Rik antisense Interval_2950 chr1 51535608 51536800 + 0 NA intron (ENSMUSG00000099413.1, intron 3 of 3) lincRNA-intron (ENSMUSG00000099413.1, intron 3 of 3) -6835 ENSMUSG00000103424.1 ENSMUSG00000103424 ENSMUST00000194442 Gm37535 TEC Interval_143511 chr7 11239821 11240059 + 0 NA Intergenic Intergenic 6793 ENSMUSG00000110112.1 ENSMUSG00000110112 ENSMUST00000210379 Gm39481 unprocessed_pseudogene Interval_83054 chr18 80849558 80850226 + 0 NA intron (ENSMUSG00000024566.10, intron 8 of 28) protein_coding-intron (ENSMUSG00000024566.10, intron 8 of 29) -4417 ENSMUSG00000114756.1 ENSMUSG00000114756 ENSMUST00000225547 Gm47273 processed_pseudogene Interval_6874 chr1 120259282 120259615 + 0 NA intron (ENSMUSG00000026389.16, intron 2 of 5) protein_coding-intron (ENSMUSG00000026389.16, intron 1 of 4) 5807 ENSMUSG00000026389.16 ENSMUSG00000026389 ENSMUST00000112643 Steap3 protein_coding Interval_43174 chr13 24856954 24857263 + 0 NA exon (ENSMUSG00000006711.15, exon 3 of 21) protein_coding-exon (ENSMUSG00000006711.15, exon 3 of 21) 25427 ENSMUSG00000035958.3 ENSMUSG00000035958 ENSMUST00000224542 Tdp2 protein_coding Interval_168989 chr9 90054172 90055162 + 0 NA exon (ENSMUSG00000032359.14, exon 1 of 1) protein_coding-exon (ENSMUSG00000032359.14, exon 1 of 1) 113 ENSMUSG00000032359.14 ENSMUSG00000032359 ENSMUST00000151219 Ctsh protein_coding Interval_114816 chr4 85764387 85764814 + 0 NA intron (ENSMUSG00000066113.16, intron 1 of 3) protein_coding-intron (ENSMUSG00000066113.16, intron 1 of 2) -145311 ENSMUSG00000088122.2 ENSMUSG00000088122 ENSMUST00000157497 Gm26069 misc_RNA Interval_90585 chr2 31277301 31277736 + 0 NA intron (ENSMUSG00000062661.6, intron 2 of 7) protein_coding-intron (ENSMUSG00000062661.6, intron 2 of 7) 31352 ENSMUSG00000062661.6 ENSMUSG00000062661 ENSMUST00000150670 Ncs1 protein_coding Interval_148442 chr7 81294091 81294711 + 0 NA intron (ENSMUSG00000025584.17, intron 5 of 21) protein_coding-intron (ENSMUSG00000025584.17, intron 5 of 21) -12292 ENSMUSG00000025584.17 ENSMUSG00000025584 ENSMUST00000130494 Pde8a protein_coding Interval_83840 chr19 5032162 5032647 + 0 NA TTS (ENSMUSG00000024891.6) protein_coding-TTS (ENSMUSG00000024891.6) -6487 ENSMUSG00000117789.1 ENSMUSG00000117789 ENSMUST00000236560 Gm50388 protein_coding Interval_146594 chr7 47150568 47151296 + 0 NA Intergenic Intergenic -6610 ENSMUSG00000109200.1 ENSMUSG00000109200 ENSMUST00000207829 Gm44969 lincRNA Interval_48912 chr13 104729857 104730139 + 0 NA intron (ENSMUSG00000021715.12, intron 10 of 13) protein_coding-intron (ENSMUSG00000021715.12, intron 10 of 13) 45067 ENSMUSG00000084860.1 ENSMUSG00000084860 ENSMUST00000131215 2610204G07Rik antisense Interval_137996 chr6 84053359 84054179 + 0 NA intron (ENSMUSG00000033788.15, intron 3 of 55) protein_coding-intron (ENSMUSG00000033788.15, intron 3 of 54) 22181 ENSMUSG00000108142.1 ENSMUSG00000108142 ENSMUST00000203282 Gm7498 processed_pseudogene Interval_117060 chr4 119274405 119276750 + 0 NA Intergenic Intergenic -18602 ENSMUSG00000085203.1 ENSMUSG00000085203 ENSMUST00000150252 Gm12927 antisense Interval_116985 chr4 118647532 118647815 + 0 NA Intergenic Intergenic -11611 ENSMUSG00000085292.1 ENSMUSG00000085292 ENSMUST00000134971 Gm12853 antisense Interval_155771 chr8 37219509 37219884 + 0 NA Intergenic Intergenic -31125 ENSMUSG00000109795.1 ENSMUSG00000109795 ENSMUST00000210784 Gm45522 processed_pseudogene Interval_16824 chr10 68611785 68612251 + 0 NA Intergenic Intergenic 80355 ENSMUSG00000112434.1 ENSMUSG00000112434 ENSMUST00000218595 Gm7594 processed_pseudogene Interval_162613 chr9 6468209 6468473 + 0 NA Intergenic Intergenic -125896 ENSMUSG00000111257.1 ENSMUSG00000111257 ENSMUST00000215843 Gm21089 processed_pseudogene Interval_42305 chr13 11933378 11935097 + 0 NA intron (ENSMUSG00000021313.16, intron 2 of 2) protein_coding-intron (ENSMUSG00000021313.16, intron 2 of 104) -5321 ENSMUSG00000098110.1 ENSMUSG00000098110 ENSMUST00000182176 Gm26956 processed_pseudogene Interval_125596 chr5 72431624 72432388 + 0 NA intron (ENSMUSG00000005220.10, intron 3 of 20) protein_coding-intron (ENSMUSG00000005220.10, intron 4 of 21) -13187 ENSMUSG00000095112.1 ENSMUSG00000095112 ENSMUST00000179713 Gm23712 snRNA Interval_92192 chr2 55784466 55784690 + 0 NA Intergenic Intergenic 9030 ENSMUSG00000082971.1 ENSMUSG00000082971 ENSMUST00000120782 Gm13517 processed_pseudogene Interval_143936 chr7 18214584 18216077 + 0 NA Intergenic Intergenic -14447 ENSMUSG00000108798.1 ENSMUSG00000108798 ENSMUST00000206656 Gm9521 processed_pseudogene Interval_166630 chr9 61398616 61398994 + 0 NA intron (ENSMUSG00000032280.16, intron 6 of 8) protein_coding-intron (ENSMUSG00000032280.16, intron 6 of 19) 26439 ENSMUSG00000032280.16 ENSMUSG00000032280 ENSMUST00000162281 Tle3 protein_coding Interval_160959 chr8 116377362 116377641 + 0 NA Intergenic Intergenic 20440 ENSMUSG00000110709.1 ENSMUSG00000110709 ENSMUST00000212522 1700018P08Rik lincRNA Interval_8576 chr1 143217269 143218156 + 0 NA Intergenic Intergenic -123096 ENSMUSG00000101795.2 ENSMUSG00000101795 ENSMUST00000185806 Gm5835 processed_pseudogene Interval_60922 chr15 77862982 77863866 + 0 NA Intergenic Intergenic -22668 ENSMUSG00000084497.1 ENSMUSG00000084497 ENSMUST00000122548 Gm22107 snRNA Interval_56206 chr14 112390327 112390504 + 0 NA Intergenic Intergenic -61240 ENSMUSG00000115581.1 ENSMUSG00000115581 ENSMUST00000228614 Gm20127 processed_pseudogene Interval_14302 chr10 30670906 30671243 + 0 NA intron (ENSMUSG00000039697.16, intron 8 of 13) protein_coding-intron (ENSMUSG00000039697.16, intron 10 of 15) 2153 ENSMUSG00000088600.1 ENSMUSG00000088600 ENSMUST00000157975 Gm24189 rRNA Interval_76662 chr17 83275689 83278055 + 0 NA Intergenic Intergenic 6901 ENSMUSG00000088410.1 ENSMUSG00000088410 ENSMUST00000157785 Gm24240 snoRNA Interval_134134 chr6 21534809 21534999 + 0 NA intron (ENSMUSG00000060882.5, intron 1 of 5) protein_coding-intron (ENSMUSG00000060882.5, intron 1 of 5) 43243 ENSMUSG00000107097.1 ENSMUSG00000107097 ENSMUST00000201404 Gm42584 processed_pseudogene Interval_31821 chr11 103140423 103142803 + 0 NA Intergenic Intergenic 9184 ENSMUSG00000043372.12 ENSMUSG00000043372 ENSMUST00000130341 Hexim2 protein_coding Interval_171070 chr9 114371410 114372303 + 0 NA TTS (ENSMUSG00000074039.10) processed_transcript-TTS (ENSMUSG00000074039.10) 3532 ENSMUSG00000074039.10 ENSMUSG00000074039 ENSMUST00000131898 4930520O04Rik processed_transcript Interval_114857 chr4 86423834 86425122 + 0 NA intron (ENSMUSG00000066113.16, intron 28 of 28) protein_coding-intron (ENSMUSG00000066113.16, intron 15 of 15) 17863 ENSMUSG00000083272.1 ENSMUSG00000083272 ENSMUST00000118478 Gm12550 processed_pseudogene Interval_22473 chr11 10736302 10736943 + 0 NA Intergenic Intergenic -359540 ENSMUSG00000084045.1 ENSMUSG00000084045 ENSMUST00000118697 Gm11997 processed_pseudogene Interval_68873 chr16 87729500 87730313 + 0 NA exon (ENSMUSG00000025612.5, exon 5 of 5) protein_coding-exon (ENSMUSG00000025612.5, exon 5 of 5) 30902 ENSMUSG00000025612.5 ENSMUSG00000025612 ENSMUST00000156958 Bach1 protein_coding Interval_38151 chr12 75982874 75984111 + 0 NA intron (ENSMUSG00000063450.14, intron 53 of 114) protein_coding-intron (ENSMUSG00000063450.14, intron 53 of 115) 74389 ENSMUSG00000092922.1 ENSMUSG00000092922 ENSMUST00000175181 Mir5101 miRNA Interval_5342 chr1 87728886 87730290 + 0 NA Intergenic Intergenic -26500 ENSMUSG00000026289.15 ENSMUSG00000026289 ENSMUST00000127884 Atg16l1 protein_coding Interval_3763 chr1 62913160 62913440 + 0 NA Intergenic Intergenic -80930 ENSMUSG00000100426.1 ENSMUSG00000100426 ENSMUST00000189802 Gm4208 lincRNA Interval_156534 chr8 49981370 49982856 + 0 NA intron (ENSMUSG00000110375.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000110375.1, intron 1 of 1) -7794 ENSMUSG00000110147.1 ENSMUSG00000110147 ENSMUST00000211193 Gm45324 TEC Interval_115474 chr4 99238272 99238756 + 0 NA intron (ENSMUSG00000028550.15, intron 10 of 10) protein_coding-intron (ENSMUSG00000028550.15, intron 10 of 10) -34157 ENSMUSG00000104479.1 ENSMUSG00000104479 ENSMUST00000195331 Gm10305 TEC Interval_78383 chr18 12357632 12358017 + 0 NA intron (ENSMUSG00000024421.16, intron 1 of 74) protein_coding-intron (ENSMUSG00000024421.16, intron 1 of 74) -7975 ENSMUSG00000099663.1 ENSMUSG00000099663 ENSMUST00000189120 Gm29201 processed_pseudogene Interval_76144 chr17 75536504 75536927 + 0 NA TTS (ENSMUSG00000002017.10) protein_coding-TTS (ENSMUSG00000002017.10) 15158 ENSMUSG00000002017.10 ENSMUSG00000002017 ENSMUST00000141969 Fam98a protein_coding Interval_47516 chr13 86102695 86103458 + 0 NA Intergenic Intergenic -56729 ENSMUSG00000017778.14 ENSMUSG00000017778 ENSMUST00000017922 Cox7c protein_coding Interval_118893 chr4 134316297 134316826 + 0 NA exon (ENSMUSG00000028834.13, exon 2 of 2) protein_coding-exon (ENSMUSG00000028834.13, exon 2 of 2) -3427 ENSMUSG00000028834.13 ENSMUSG00000028834 ENSMUST00000135576 Trim63 protein_coding Interval_27038 chr11 62499027 62499338 + 0 NA intron (ENSMUSG00000086310.1, intron 1 of 1) protein_coding-intron (ENSMUSG00000014245.8, intron 2 of 6) 16385 ENSMUSG00000086310.1 ENSMUSG00000086310 ENSMUST00000153718 Gm12278 antisense Interval_97600 chr2 140296636 140296895 + 0 NA promoter-TSS (ENSMUSG00000074764.11) protein_coding-promoter-TSS (ENSMUSG00000074764.11) 63 ENSMUSG00000074764.11 ENSMUSG00000074764 ENSMUST00000120133 Sel1l2 protein_coding Interval_60153 chr15 66577277 66578362 + 0 NA exon (ENSMUSG00000072501.5, exon 1 of 21) protein_coding-exon (ENSMUSG00000072501.5, exon 1 of 21) -16716 ENSMUSG00000036944.6 ENSMUSG00000036944 ENSMUST00000048372 Tmem71 protein_coding Interval_138523 chr6 88898354 88899099 + 0 NA promoter-TSS (ENSMUSG00000002870.8) protein_coding-promoter-TSS (ENSMUSG00000002870.8) -3607 ENSMUSG00000002871.14 ENSMUSG00000002871 ENSMUST00000203155 Tpra1 protein_coding Interval_121378 chr4 155353863 155354153 + 0 NA intron (ENSMUSG00000029053.16, intron 4 of 17) protein_coding-intron (ENSMUSG00000029053.16, intron 4 of 17) -9268 ENSMUSG00000029053.16 ENSMUSG00000029053 ENSMUST00000105624 Prkcz protein_coding Interval_45652 chr13 56575516 56576300 + 0 NA Intergenic Intergenic -19629 ENSMUSG00000114604.1 ENSMUSG00000114604 ENSMUST00000224345 2010203P06Rik lincRNA Interval_170335 chr9 107248965 107249246 + 0 NA Intergenic Intergenic 7885 ENSMUSG00000104086.1 ENSMUSG00000104086 ENSMUST00000195377 1700039M15Rik lincRNA Interval_41198 chr12 111736838 111737603 + 0 NA intron (ENSMUSG00000037787.14, intron 4 of 5) protein_coding-intron (ENSMUSG00000037787.14, intron 4 of 5) -5389 ENSMUSG00000090026.1 ENSMUSG00000090026 ENSMUST00000161925 Gm15996 antisense Interval_5466 chr1 89057865 89058234 + 0 NA Intergenic Intergenic 9075 ENSMUSG00000099544.1 ENSMUSG00000099544 ENSMUST00000190713 Gm18699 processed_pseudogene Interval_141251 chr6 126551947 126552450 + 0 NA intron (ENSMUSG00000110390.1, intron 3 of 4) lincRNA-intron (ENSMUSG00000110390.1, intron 3 of 4) 2718 ENSMUSG00000102771.1 ENSMUSG00000102771 ENSMUST00000192232 Gm33320 TEC Interval_159912 chr8 105142149 105143014 + 0 NA intron (ENSMUSG00000060560.8, intron 4 of 13) protein_coding-intron (ENSMUSG00000060560.8, intron 4 of 13) 10781 ENSMUSG00000060560.8 ENSMUSG00000060560 ENSMUST00000161289 Ces4a protein_coding Interval_98660 chr2 153942758 153943993 + 0 NA promoter-TSS (ENSMUSG00000074665.11) protein_coding-promoter-TSS (ENSMUSG00000074665.11) 5154 ENSMUSG00000074665.11 ENSMUSG00000074665 ENSMUST00000099181 Bpifb4 protein_coding Interval_130210 chr5 124960253 124960730 + 0 NA Intergenic Intergenic -42984 ENSMUSG00000037962.7 ENSMUSG00000037962 ENSMUST00000145946 Rflna protein_coding Interval_623 chr1 9056501 9056731 + 0 NA intron (ENSMUSG00000025909.16, intron 2 of 20) protein_coding-intron (ENSMUSG00000025909.16, intron 3 of 4) -92995 ENSMUSG00000066693.2 ENSMUSG00000066693 ENSMUST00000085919 Gm7493 processed_pseudogene Interval_162524 chr9 3781311 3781636 + 0 NA intron (ENSMUSG00000041624.10, intron 5 of 7) protein_coding-intron (ENSMUSG00000041624.10, intron 5 of 7) 248585 ENSMUSG00000041624.10 ENSMUSG00000041624 ENSMUST00000212705 Gucy1a2 protein_coding Interval_26985 chr11 62166677 62167140 + 0 NA intron (ENSMUSG00000042331.13, intron 12 of 14) protein_coding-intron (ENSMUSG00000042331.13, intron 10 of 12) 49489 ENSMUSG00000118644.1 ENSMUSG00000118644 ENSMUST00000239393 AL592080.1 unprocessed_pseudogene Interval_71356 chr17 22623782 22624079 + 0 NA Intergenic Intergenic 22979 ENSMUSG00000094921.2 ENSMUSG00000094921 ENSMUST00000234826 Vmn2r112 protein_coding Interval_72617 chr17 31088272 31089150 + 0 NA intron (ENSMUSG00000024030.7, intron 2 of 5) protein_coding-intron (ENSMUSG00000024030.7, intron 2 of 14) 29107 ENSMUSG00000089622.1 ENSMUSG00000089622 ENSMUST00000158997 Gm25447 rRNA Interval_90812 chr2 32750767 32751886 + 0 NA intron (ENSMUSG00000059013.12, intron 7 of 10) protein_coding-intron (ENSMUSG00000059013.12, intron 8 of 11) -5919 ENSMUSG00000009563.16 ENSMUSG00000009563 ENSMUST00000149987 Tor2a protein_coding Interval_64092 chr16 7804637 7804941 + 0 NA Intergenic Intergenic -65313 ENSMUSG00000116450.1 ENSMUSG00000116450 ENSMUST00000230593 Gm49534 lincRNA Interval_122500 chr5 23456438 23456674 + 0 NA intron (ENSMUSG00000029004.15, intron 2 of 12) protein_coding-intron (ENSMUSG00000029004.15, intron 2 of 25) -21999 ENSMUSG00000029004.15 ENSMUSG00000029004 ENSMUST00000194010 Kmt2e protein_coding Interval_174594 chrX 159587393 159587725 + 0 NA promoter-TSS (ENSMUSG00000083906.1) processed_pseudogene-promoter-TSS (ENSMUSG00000083906.1) -906 ENSMUSG00000083906.1 ENSMUSG00000083906 ENSMUST00000119345 Gm15186 processed_pseudogene Interval_31109 chr11 98192597 98193875 + 0 NA promoter-TSS (ENSMUSG00000018160.15) protein_coding-promoter-TSS (ENSMUSG00000018160.15) 7870 ENSMUSG00000085897.2 ENSMUSG00000085897 ENSMUST00000121487 Gm11604 processed_pseudogene Interval_91333 chr2 37842342 37843072 + 0 NA intron (ENSMUSG00000035392.17, intron 18 of 18) protein_coding-intron (ENSMUSG00000035392.17, intron 19 of 21) 51536 ENSMUSG00000035403.10 ENSMUSG00000035403 ENSMUST00000137693 Crb2 protein_coding Interval_47251 chr13 79721196 79721751 + 0 NA Intergenic Intergenic -116604 ENSMUSG00000114505.1 ENSMUSG00000114505 ENSMUST00000223593 Gm48471 processed_pseudogene Interval_60849 chr15 77134317 77134598 + 0 NA intron (ENSMUSG00000033565.18, intron 1 of 3) protein_coding-intron (ENSMUSG00000033565.18, intron 2 of 12) -18655 ENSMUSG00000116298.1 ENSMUSG00000116298 ENSMUST00000230697 4833412C15Rik TEC Interval_172455 chrX 20662382 20663740 + 0 NA exon (ENSMUSG00000001924.15, exon 1 of 26) protein_coding-exon (ENSMUSG00000001924.15, exon 1 of 26) 4640 ENSMUSG00000001924.15 ENSMUSG00000001924 ENSMUST00000136915 Uba1 protein_coding Interval_56316 chr14 117192639 117192832 + 0 NA intron (ENSMUSG00000058571.11, intron 2 of 9) protein_coding-intron (ENSMUSG00000058571.11, intron 2 of 8) 267204 ENSMUSG00000058571.11 ENSMUSG00000058571 ENSMUST00000078849 Gpc6 protein_coding Interval_122460 chr5 23039760 23039998 + 0 NA intron (ENSMUSG00000106379.1, intron 1 of 3) protein_coding-intron (ENSMUSG00000106379.1, intron 1 of 3) -107866 ENSMUSG00000060879.3 ENSMUSG00000060879 ENSMUST00000075377 Gm6564 processed_pseudogene Interval_32571 chr11 108694413 108694613 + 0 NA intron (ENSMUSG00000020728.17, intron 1 of 4) protein_coding-intron (ENSMUSG00000020728.17, intron 22 of 27) -6478 ENSMUSG00000081016.1 ENSMUSG00000081016 ENSMUST00000121388 Olfr1397-ps1 unprocessed_pseudogene Interval_165023 chr9 43988953 43990339 + 0 NA Intergenic Intergenic -4338 ENSMUSG00000111283.1 ENSMUSG00000111283 ENSMUST00000215430 E230034D01Rik processed_transcript Interval_30246 chr11 91830599 91830816 + 0 NA exon (ENSMUSG00000081630.1, exon 1 of 1) processed_pseudogene-exon (ENSMUSG00000081630.1, exon 1 of 1) 683 ENSMUSG00000081630.1 ENSMUSG00000081630 ENSMUST00000120660 Gm11498 processed_pseudogene Interval_12358 chr1 192515147 192516098 + 0 NA intron (ENSMUSG00000037375.16, intron 11 of 11) protein_coding-intron (ENSMUSG00000037375.16, intron 11 of 11) 80882 ENSMUSG00000058248.12 ENSMUSG00000058248 ENSMUST00000151152 Kcnh1 protein_coding Interval_160840 chr8 113535873 113536089 + 0 NA Intergenic Intergenic -7310 ENSMUSG00000088258.1 ENSMUSG00000088258 ENSMUST00000157633 Gm24291 snRNA Interval_23385 chr11 22084284 22084827 + 0 NA intron (ENSMUSG00000042302.14, intron 15 of 24) protein_coding-intron (ENSMUSG00000042302.14, intron 14 of 23) -82845 ENSMUSG00000005917.15 ENSMUSG00000005917 ENSMUST00000147486 Otx1 protein_coding Interval_16800 chr10 68237043 68237459 + 0 NA intron (ENSMUSG00000019947.10, intron 3 of 9) protein_coding-intron (ENSMUSG00000019947.10, intron 3 of 10) 41489 ENSMUSG00000019947.10 ENSMUSG00000019947 ENSMUST00000218425 Arid5b protein_coding Interval_42160 chr13 9328964 9329806 + 0 NA exon (ENSMUSG00000113984.1, exon 1 of 1) TEC-exon (ENSMUSG00000113984.1, exon 1 of 1) 755 ENSMUSG00000113984.1 ENSMUSG00000113984 ENSMUST00000220775 Gm48890 TEC Interval_141883 chr6 135112542 135113627 + 0 NA intron (ENSMUSG00000030205.15, intron 2 of 3) protein_coding-intron (ENSMUSG00000030205.15, intron 2 of 3) 5199 ENSMUSG00000030205.15 ENSMUSG00000030205 ENSMUST00000111922 Gprc5d protein_coding Interval_16543 chr10 63503194 63503513 + 0 NA promoter-TSS (ENSMUSG00000060843.11) protein_coding-promoter-TSS (ENSMUSG00000060843.11) -81564 ENSMUSG00000048185.5 ENSMUSG00000048185 ENSMUST00000054760 Gm7075 protein_coding Interval_160109 chr8 106507413 106508804 + 0 NA exon (ENSMUSG00000054069.8, exon 3 of 3) lincRNA-exon (ENSMUSG00000054069.8, exon 3 of 3) -2783 ENSMUSG00000061048.8 ENSMUSG00000061048 ENSMUST00000080797 Cdh3 protein_coding Interval_57048 chr15 5115968 5117180 + 0 NA promoter-TSS (ENSMUSG00000041841.8) protein_coding-promoter-TSS (ENSMUSG00000041841.8) -507 ENSMUSG00000041841.8 ENSMUSG00000041841 ENSMUST00000227111 Rpl37 protein_coding Interval_47971 chr13 94766026 94766719 + 0 NA Intergenic Intergenic -11779 ENSMUSG00000113547.1 ENSMUSG00000113547 ENSMUST00000223199 Gm46389 processed_pseudogene Interval_98222 chr2 150105850 150106088 + 0 NA Intergenic Intergenic 5607 ENSMUSG00000083055.1 ENSMUSG00000083055 ENSMUST00000119999 Gm14140 processed_pseudogene Interval_163505 chr9 21762123 21763066 + 0 NA Intergenic Intergenic -2312 ENSMUSG00000074476.6 ENSMUSG00000074476 ENSMUST00000214149 Spc24 protein_coding Interval_20550 chr10 118840032 118840273 + 0 NA Intergenic Intergenic -5046 ENSMUSG00000112616.1 ENSMUSG00000112616 ENSMUST00000218937 Gm47434 TEC Interval_132332 chr5 144230407 144231171 + 0 NA Intergenic Intergenic 7064 ENSMUSG00000104662.1 ENSMUSG00000104662 ENSMUST00000199664 Gm43267 TEC Interval_148199 chr7 79771261 79773198 + 0 NA intron (ENSMUSG00000039099.7, intron 12 of 17) protein_coding-intron (ENSMUSG00000039099.7, intron 12 of 17) 18396 ENSMUSG00000108506.1 ENSMUSG00000108506 ENSMUST00000206719 Gm44705 processed_pseudogene Interval_21457 chr10 128720846 128721598 + 0 NA TTS (ENSMUSG00000025359.10) protein_coding-TTS (ENSMUSG00000025359.10) 16042 ENSMUSG00000025359.10 ENSMUSG00000025359 ENSMUST00000054125 Pmel protein_coding Interval_145175 chr7 30463318 30467811 + 0 NA promoter-TSS (ENSMUSG00000087009.1) antisense-promoter-TSS (ENSMUSG00000087009.1) 27 ENSMUSG00000087009.1 ENSMUSG00000087009 ENSMUST00000152625 Nphs1os antisense Interval_163746 chr9 25193017 25193279 + 0 NA Intergenic Intergenic 35921 ENSMUSG00000111459.1 ENSMUSG00000111459 ENSMUST00000213430 Gm8031 processed_pseudogene Interval_68280 chr16 72287578 72287759 + 0 NA Intergenic Intergenic -53341 ENSMUSG00000116769.1 ENSMUSG00000116769 ENSMUST00000231977 8030451O07Rik lincRNA Interval_27344 chr11 66808010 66808202 + 0 NA Intergenic Intergenic -103875 ENSMUSG00000048070.4 ENSMUSG00000048070 ENSMUST00000123434 Pirt protein_coding Interval_95354 chr2 106860568 106861104 + 0 NA intron (ENSMUSG00000016386.15, intron 4 of 6) protein_coding-intron (ENSMUSG00000016386.15, intron 4 of 6) 51500 ENSMUSG00000105450.1 ENSMUSG00000105450 ENSMUST00000199948 Gm22813 scaRNA Interval_121406 chr4 155573975 155574147 + 0 NA intron (ENSMUSG00000029063.16, intron 1 of 3) protein_coding-intron (ENSMUSG00000029063.16, intron 1 of 11) -12716 ENSMUSG00000029063.16 ENSMUSG00000029063 ENSMUST00000152297 Nadk protein_coding Interval_70456 chr17 10348013 10348546 + 0 NA Intergenic Intergenic 23677 ENSMUSG00000099384.6 ENSMUSG00000099384 ENSMUST00000188715 1700110C19Rik lincRNA Interval_23689 chr11 24613221 24613743 + 0 NA intron (ENSMUSG00000087085.1, intron 2 of 3) lincRNA-intron (ENSMUSG00000087085.1, intron 2 of 3) -59424 ENSMUSG00000088502.1 ENSMUSG00000088502 ENSMUST00000157877 Gm22787 snRNA Interval_1700 chr1 31492110 31492751 + 0 NA Intergenic Intergenic -67110 ENSMUSG00000101093.1 ENSMUSG00000101093 ENSMUST00000189839 Eef1a1-ps2 processed_pseudogene Interval_48675 chr13 101056130 101056413 + 0 NA Intergenic Intergenic -17025 ENSMUSG00000096722.2 ENSMUSG00000096722 ENSMUST00000179479 Hmgb1-ps9 processed_pseudogene Interval_39930 chr12 99863083 99863799 + 0 NA intron (ENSMUSG00000021176.6, intron 4 of 6) protein_coding-intron (ENSMUSG00000021176.6, intron 3 of 5) 20971 ENSMUSG00000021176.6 ENSMUSG00000021176 ENSMUST00000221197 Efcab11 protein_coding Interval_75085 chr17 63156884 63157117 + 0 NA intron (ENSMUSG00000023965.13, intron 4 of 5) protein_coding-intron (ENSMUSG00000023965.13, intron 7 of 8) -45738 ENSMUSG00000088853.1 ENSMUSG00000088853 ENSMUST00000158228 Gm24730 snoRNA Interval_118452 chr4 131722458 131723745 + 0 NA Intergenic Intergenic -12593 ENSMUSG00000086856.1 ENSMUSG00000086856 ENSMUST00000152128 Gm16080 lincRNA Interval_131309 chr5 136321329 136322199 + 0 NA intron (ENSMUSG00000029705.17, intron 11 of 20) protein_coding-intron (ENSMUSG00000029705.17, intron 11 of 23) 28467 ENSMUSG00000102415.1 ENSMUSG00000102415 ENSMUST00000195666 A430110C17Rik TEC Interval_65212 chr16 20557080 20558150 + 0 NA intron (ENSMUSG00000003234.16, intron 14 of 17) protein_coding-intron (ENSMUSG00000003234.16, intron 14 of 20) 8413 ENSMUSG00000116942.1 ENSMUSG00000116942 ENSMUST00000231625 Gm49744 processed_pseudogene Interval_174002 chrX 128576298 128577177 + 0 NA Intergenic Intergenic -53928 ENSMUSG00000080419.1 ENSMUSG00000080419 ENSMUST00000116769 Gm26475 miRNA Interval_169294 chr9 96207337 96208004 + 0 NA intron (ENSMUSG00000032411.15, intron 2 of 11) protein_coding-intron (ENSMUSG00000032411.15, intron 2 of 12) -11460 ENSMUSG00000103611.1 ENSMUSG00000103611 ENSMUST00000192006 Gm37195 TEC Interval_85114 chr19 22976827 22977488 + 0 NA intron (ENSMUSG00000052387.16, intron 21 of 24) protein_coding-intron (ENSMUSG00000052387.16, intron 22 of 26) -84297 ENSMUSG00000118155.1 ENSMUSG00000118155 ENSMUST00000235686 Gm50136 lincRNA Interval_100726 chr2 172102442 172102731 + 0 NA Intergenic Intergenic 1965 ENSMUSG00000083793.1 ENSMUSG00000083793 ENSMUST00000117182 Gm14274 processed_pseudogene Interval_134170 chr6 22344760 22345148 + 0 NA intron (ENSMUSG00000029672.16, intron 1 of 9) protein_coding-intron (ENSMUSG00000029672.16, intron 1 of 8) -1041 ENSMUSG00000029672.16 ENSMUSG00000029672 ENSMUST00000168965 Fam3c protein_coding Interval_59653 chr15 57589448 57590287 + 0 NA Intergenic Intergenic -100996 ENSMUSG00000115629.1 ENSMUSG00000115629 ENSMUST00000227877 Gm49235 processed_pseudogene Interval_20491 chr10 117909745 117910538 + 0 NA Intergenic Intergenic -15318 ENSMUSG00000112500.1 ENSMUSG00000112500 ENSMUST00000217950 4933411E08Rik lincRNA Interval_128957 chr5 116310910 116312306 + 0 NA promoter-TSS (ENSMUSG00000086715.1) lincRNA-promoter-TSS (ENSMUSG00000086715.1) -752 ENSMUSG00000086715.1 ENSMUSG00000086715 ENSMUST00000128473 B230112J18Rik lincRNA Interval_142660 chr6 144875730 144877424 + 0 NA Intergenic Intergenic -72945 ENSMUSG00000087850.1 ENSMUSG00000087850 ENSMUST00000157225 Gm22792 snoRNA Interval_1106 chr1 15768588 15768971 + 0 NA Intergenic Intergenic 8018 ENSMUSG00000100814.1 ENSMUSG00000100814 ENSMUST00000188400 Gm28669 processed_pseudogene Interval_145593 chr7 35763774 35764618 + 0 NA Intergenic Intergenic 14972 ENSMUSG00000044452.10 ENSMUSG00000044452 ENSMUST00000206003 Zfp507 protein_coding Interval_80104 chr18 37655181 37656327 + 0 NA promoter-TSS (ENSMUSG00000073590.3) lincRNA-promoter-TSS (ENSMUSG00000073590.3) 303 ENSMUSG00000073590.3 ENSMUSG00000073590 ENSMUST00000097608 3222401L13Rik lincRNA Interval_160354 chr8 108703576 108705108 + 0 NA intron (ENSMUSG00000038872.10, intron 1 of 1) protein_coding-intron (ENSMUSG00000038872.10, intron 1 of 1) -33251 ENSMUSG00000104292.1 ENSMUSG00000104292 ENSMUST00000191614 Gm38042 TEC Interval_93045 chr2 69778426 69779207 + 0 NA intron (ENSMUSG00000070883.3, intron 4 of 8) protein_coding-intron (ENSMUSG00000070883.3, intron 4 of 8) 3172 ENSMUSG00000070883.3 ENSMUSG00000070883 ENSMUST00000148190 Ccdc173 protein_coding Interval_20981 chr10 122987871 122988169 + 0 NA Intergenic Intergenic -2189 ENSMUSG00000112237.1 ENSMUSG00000112237 ENSMUST00000218534 D630033A02Rik transcribed_processed_pseudogene Interval_123319 chr5 31378019 31378582 + 0 NA Intergenic Intergenic -21505 ENSMUSG00000106935.1 ENSMUSG00000106935 ENSMUST00000200995 Gm19457 processed_pseudogene Interval_71606 chr17 24817715 24817900 + 0 NA intron (ENSMUSG00000024155.8, intron 3 of 12) protein_coding-intron (ENSMUSG00000024155.8, intron 3 of 13) 13448 ENSMUSG00000024155.8 ENSMUSG00000024155 ENSMUST00000234455 Meiob protein_coding Interval_169767 chr9 101073314 101075267 + 0 NA promoter-TSS (ENSMUSG00000066415.4) protein_coding-promoter-TSS (ENSMUSG00000066415.4) 189 ENSMUSG00000066415.4 ENSMUSG00000066415 ENSMUST00000085177 Msl2 protein_coding Interval_88152 chr19 59870176 59870504 + 0 NA Intergenic Intergenic 30722 ENSMUSG00000090965.1 ENSMUSG00000090965 ENSMUST00000164379 Gm17203 lincRNA Interval_101743 chr3 9333896 9335558 + 0 NA Intergenic Intergenic -67448 ENSMUSG00000088229.1 ENSMUSG00000088229 ENSMUST00000157604 Gm22604 misc_RNA Interval_52597 chr14 47797155 47797441 + 0 NA intron (ENSMUSG00000115215.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000115215.1, intron 1 of 2) 4167 ENSMUSG00000115046.1 ENSMUSG00000115046 ENSMUST00000228127 Gm49302 lincRNA Interval_127175 chr5 100833884 100834274 + 0 NA Intergenic Intergenic 2798 ENSMUSG00000077354.1 ENSMUSG00000077354 ENSMUST00000104166 Gm26286 snoRNA Interval_173799 chrX 104461988 104462332 + 0 NA Intergenic Intergenic -20658 ENSMUSG00000073016.3 ENSMUSG00000073016 ENSMUST00000087867 Uprt protein_coding Interval_145600 chr7 35822459 35822626 + 0 NA intron (ENSMUSG00000044997.3, intron 2 of 2) antisense-intron (ENSMUSG00000044997.3, intron 2 of 2) -15718 ENSMUSG00000100387.1 ENSMUSG00000100387 ENSMUST00000187488 Gm28514 lincRNA Interval_93689 chr2 75869328 75870491 + 0 NA intron (ENSMUSG00000042410.16, intron 1 of 1) protein_coding-intron (ENSMUSG00000042410.16, intron 10 of 19) -39262 ENSMUSG00000042410.16 ENSMUSG00000042410 ENSMUST00000177204 Agps protein_coding Interval_109191 chr3 137801229 137802377 + 0 NA intron (ENSMUSG00000105427.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000105427.1, intron 1 of 2) 1666 ENSMUSG00000105427.1 ENSMUSG00000105427 ENSMUST00000198262 Gm31678 lincRNA Interval_23201 chr11 20531973 20532770 + 0 NA Intergenic Intergenic -10882 ENSMUSG00000049800.13 ENSMUSG00000049800 ENSMUST00000109585 Sertad2 protein_coding Interval_47535 chr13 86966858 86967804 + 0 NA Intergenic Intergenic -241399 ENSMUSG00000095933.1 ENSMUSG00000095933 ENSMUST00000177693 Gm25700 miRNA Interval_43461 chr13 31369834 31370046 + 0 NA exon (ENSMUSG00000085620.2, exon 6 of 9) lincRNA-exon (ENSMUSG00000085620.2, exon 6 of 9) 16960 ENSMUSG00000088693.1 ENSMUSG00000088693 ENSMUST00000158068 Gm22330 snoRNA Interval_32060 chr11 104944622 104945554 + 0 NA intron (ENSMUSG00000040838.10, intron 110 of 187) protein_coding-intron (ENSMUSG00000040838.10, intron 110 of 187) 16872 ENSMUSG00000080694.1 ENSMUSG00000080694 ENSMUST00000118253 Gm11621 processed_pseudogene Interval_103345 chr3 39857219 39858241 + 0 NA Intergenic Intergenic 34153 ENSMUSG00000106948.1 ENSMUSG00000106948 ENSMUST00000202316 Gm42785 processed_pseudogene Interval_21823 chr11 4574547 4574802 + 0 NA intron (ENSMUSG00000034354.17, intron 1 of 17) protein_coding-intron (ENSMUSG00000034354.17, intron 1 of 17) 12894 ENSMUSG00000081974.3 ENSMUSG00000081974 ENSMUST00000122068 Gm11960 transcribed_processed_pseudogene Interval_36243 chr12 40222188 40223617 + 0 NA promoter-TSS (ENSMUSG00000089371.1) miRNA-promoter-TSS (ENSMUSG00000089371.1) -91 ENSMUSG00000089371.1 ENSMUSG00000089371 ENSMUST00000158746 Mir1938 miRNA Interval_115948 chr4 106499612 106500007 + 0 NA exon (ENSMUSG00000085933.3, exon 3 of 3) protein_coding-exon (ENSMUSG00000085933.3, exon 3 of 3) 6152 ENSMUSG00000118551.1 ENSMUSG00000118551 ENSMUST00000238822 AL954352.1 processed_transcript Interval_58260 chr15 31453149 31453935 + 0 NA promoter-TSS (ENSMUSG00000115710.1) bidirectional_promoter_lncRNA-promoter-TSS (ENSMUSG00000115710.1) 195 ENSMUSG00000022236.10 ENSMUSG00000022236 ENSMUST00000110408 Ropn1l protein_coding Interval_54332 chr14 67741849 67743432 + 0 NA TTS (ENSMUSG00000034327.17) protein_coding-TTS (ENSMUSG00000034327.17) -3630 ENSMUSG00000015812.8 ENSMUSG00000015812 ENSMUST00000223951 Gnrh1 protein_coding Interval_146712 chr7 49632161 49633737 + 0 NA intron (ENSMUSG00000030507.6, intron 3 of 3) protein_coding-intron (ENSMUSG00000030507.6, intron 3 of 3) 3900 ENSMUSG00000030507.6 ENSMUSG00000030507 ENSMUST00000032717 Dbx1 protein_coding Interval_115942 chr4 106447526 106447814 + 0 NA exon (ENSMUSG00000044254.6, exon 8 of 12) protein_coding-exon (ENSMUSG00000044254.6, exon 8 of 12) 16659 ENSMUSG00000044254.6 ENSMUSG00000044254 ENSMUST00000049507 Pcsk9 protein_coding Interval_75908 chr17 72926109 72926621 + 0 NA intron (ENSMUSG00000024063.13, intron 2 of 2) protein_coding-intron (ENSMUSG00000024063.13, intron 2 of 2) 5177 ENSMUSG00000024063.13 ENSMUSG00000024063 ENSMUST00000148556 Lbh protein_coding Interval_40142 chr12 101930952 101931204 + 0 NA intron (ENSMUSG00000021189.11, intron 9 of 10) protein_coding-intron (ENSMUSG00000021189.11, intron 9 of 10) 17838 ENSMUSG00000093579.1 ENSMUSG00000093579 ENSMUST00000177547 Gm20036 processed_transcript Interval_32808 chr11 110942497 110942903 + 0 NA Intergenic Intergenic -25333 ENSMUSG00000051497.15 ENSMUSG00000051497 ENSMUST00000178798 Kcnj16 protein_coding Interval_34719 chr12 8912740 8914142 + 0 NA intron (ENSMUSG00000112891.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000112891.1, intron 1 of 1) 517 ENSMUSG00000112891.1 ENSMUSG00000112891 ENSMUST00000219499 Gm47391 lincRNA Interval_132066 chr5 142581607 142581979 + 0 NA TTS (ENSMUSG00000039533.8) protein_coding-TTS (ENSMUSG00000039533.8) 25349 ENSMUSG00000105213.1 ENSMUSG00000105213 ENSMUST00000196808 Gm43037 unprocessed_pseudogene Interval_174292 chrX 143978536 143978849 + 0 NA Intergenic Intergenic -45642 ENSMUSG00000031285.14 ENSMUSG00000031285 ENSMUST00000125768 Dcx protein_coding Interval_153201 chr7 142371613 142372712 + 0 NA promoter-TSS (ENSMUSG00000045777.14) protein_coding-promoter-TSS (ENSMUSG00000045777.14) 107 ENSMUSG00000045777.14 ENSMUSG00000045777 ENSMUST00000123543 Ifitm10 protein_coding Interval_58363 chr15 33612415 33613135 + 0 NA intron (ENSMUSG00000115779.1, intron 5 of 5) antisense-intron (ENSMUSG00000115779.1, intron 5 of 5) -23039 ENSMUSG00000088062.1 ENSMUSG00000088062 ENSMUST00000157437 Gm24476 rRNA Interval_116366 chr4 110311766 110313352 + 0 NA intron (ENSMUSG00000028546.17, intron 1 of 5) protein_coding-intron (ENSMUSG00000028546.17, intron 1 of 5) -25032 ENSMUSG00000028546.17 ENSMUSG00000028546 ENSMUST00000142722 Elavl4 protein_coding Interval_132253 chr5 143630377 143630586 + 0 NA intron (ENSMUSG00000018001.18, intron 1 of 12) protein_coding-intron (ENSMUSG00000018001.18, intron 1 of 12) 7980 ENSMUSG00000018001.18 ENSMUSG00000018001 ENSMUST00000110727 Cyth3 protein_coding Interval_91 GL456221.1 103744 103944 + 0 NA NA NA NA NA Interval_30660 chr11 95737688 95738196 + 0 NA intron (ENSMUSG00000075595.9, intron 1 of 6) protein_coding-intron (ENSMUSG00000075595.9, intron 1 of 5) -11058 ENSMUSG00000075595.9 ENSMUSG00000075595 ENSMUST00000091565 Zfp652 protein_coding Interval_10329 chr1 169440087 169440280 + 0 NA Intergenic Intergenic 13686 ENSMUSG00000058622.1 ENSMUSG00000058622 ENSMUST00000076828 Gm5265 processed_pseudogene Interval_79706 chr18 34631131 34631945 + 0 NA TTS (ENSMUSG00000024370.17) protein_coding-TTS (ENSMUSG00000024370.17) 6333 ENSMUSG00000024370.17 ENSMUSG00000024370 ENSMUST00000135208 Cdc23 protein_coding Interval_108315 chr3 123613360 123614269 + 0 NA intron (ENSMUSG00000027977.15, intron 1 of 6) protein_coding-intron (ENSMUSG00000027977.15, intron 3 of 12) -53685 ENSMUSG00000027977.15 ENSMUSG00000027977 ENSMUST00000132896 Ndst3 protein_coding Interval_73996 chr17 45924335 45925825 + 0 NA Intergenic Intergenic -36779 ENSMUSG00000117040.1 ENSMUSG00000117040 ENSMUST00000233512 Gm49805 lincRNA Interval_41727 chr12 118377034 118377269 + 0 NA Intergenic Intergenic -75783 ENSMUSG00000025323.10 ENSMUSG00000025323 ENSMUST00000221844 Sp4 protein_coding Interval_37571 chr12 69958945 69959174 + 0 NA exon (ENSMUSG00000021066.9, exon 13 of 15) protein_coding-exon (ENSMUSG00000021066.9, exon 13 of 15) -10235 ENSMUSG00000079076.2 ENSMUSG00000079076 ENSMUST00000221248 Gm3086 transcribed_processed_pseudogene Interval_42220 chr13 10079218 10080111 + 0 NA intron (ENSMUSG00000046159.16, intron 3 of 4) protein_coding-intron (ENSMUSG00000046159.16, intron 3 of 4) -8798 ENSMUSG00000113680.1 ENSMUSG00000113680 ENSMUST00000221804 Gm47405 sense_intronic Interval_52753 chr14 49390742 49390956 + 0 NA intron (ENSMUSG00000021852.14, intron 1 of 2) protein_coding-intron (ENSMUSG00000021852.14, intron 1 of 7) 91013 ENSMUSG00000115096.1 ENSMUSG00000115096 ENSMUST00000228016 Gm48940 antisense Interval_29189 chr11 81240293 81240913 + 0 NA intron (ENSMUSG00000020704.13, intron 1 of 9) protein_coding-intron (ENSMUSG00000020704.13, intron 1 of 9) -144410 ENSMUSG00000086971.1 ENSMUSG00000086971 ENSMUST00000141593 4930527B05Rik antisense Interval_154482 chr8 18597397 18597827 + 0 NA intron (ENSMUSG00000039842.15, intron 2 of 11) protein_coding-intron (ENSMUSG00000039842.15, intron 2 of 13) 2036 ENSMUSG00000039842.15 ENSMUSG00000039842 ENSMUST00000141244 Mcph1 protein_coding Interval_167354 chr9 67753208 67754241 + 0 NA Intergenic Intergenic -4960 ENSMUSG00000111272.1 ENSMUSG00000111272 ENSMUST00000216858 Gm7787 processed_pseudogene Interval_166434 chr9 59451122 59451839 + 0 NA intron (ENSMUSG00000025234.11, intron 2 of 13) protein_coding-intron (ENSMUSG00000025234.11, intron 2 of 11) 20753 ENSMUSG00000090516.1 ENSMUSG00000090516 ENSMUST00000171632 Rps11-ps1 processed_pseudogene Interval_122858 chr5 26282086 26282692 + 0 NA Intergenic Intergenic 24698 ENSMUSG00000059645.6 ENSMUSG00000059645 ENSMUST00000074148 Gm7361 protein_coding Interval_103039 chr3 34668083 34668797 + 0 NA intron (ENSMUSG00000105265.4, intron 1 of 1) processed_transcript-intron (ENSMUSG00000105265.4, intron 3 of 3) -4151 ENSMUSG00000105284.1 ENSMUSG00000105284 ENSMUST00000196779 Gm42693 TEC Interval_76626 chr17 82946450 82947109 + 0 NA Intergenic Intergenic -9217 ENSMUSG00000117472.1 ENSMUSG00000117472 ENSMUST00000234284 Gm4601 processed_pseudogene Interval_55968 chr14 103478895 103479673 + 0 NA intron (ENSMUSG00000115762.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000115762.1, intron 1 of 2) 15233 ENSMUSG00000115762.1 ENSMUSG00000115762 ENSMUST00000228400 Gm34907 lincRNA Interval_25574 chr11 49886604 49887234 + 0 NA TTS (ENSMUSG00000020366.18) protein_coding-TTS (ENSMUSG00000020366.18) -8812 ENSMUSG00000080487.1 ENSMUSG00000080487 ENSMUST00000116837 Gm23492 miRNA Interval_88974 chr2 13806273 13806735 + 0 NA Intergenic Intergenic -13211 ENSMUSG00000003418.11 ENSMUSG00000003418 ENSMUST00000150781 St8sia6 protein_coding Interval_28643 chr11 77503474 77504123 + 0 NA TTS (ENSMUSG00000011877.13) protein_coding-TTS (ENSMUSG00000011877.13) 4707 ENSMUSG00000011877.13 ENSMUSG00000011877 ENSMUST00000128796 Git1 protein_coding Interval_163203 chr9 18090635 18090887 + 0 NA Intergenic Intergenic 2716 ENSMUSG00000111728.1 ENSMUSG00000111728 ENSMUST00000216330 Gm48850 processed_pseudogene Interval_48078 chr13 95842763 95843202 + 0 NA intron (ENSMUSG00000021676.10, intron 1 of 6) protein_coding-intron (ENSMUSG00000021676.10, intron 1 of 35) 54138 ENSMUSG00000065866.1 ENSMUSG00000065866 ENSMUST00000083932 Gm24032 snRNA Interval_106445 chr3 96401627 96403289 + 0 NA promoter-TSS (ENSMUSG00000097299.1) lincRNA-promoter-TSS (ENSMUSG00000097299.1) 77 ENSMUSG00000097299.1 ENSMUSG00000097299 ENSMUST00000180455 Gm26654 lincRNA Interval_76013 chr17 74354337 74354645 + 0 NA intron (ENSMUSG00000024068.8, intron 2 of 15) protein_coding-intron (ENSMUSG00000024068.8, intron 2 of 16) 15454 ENSMUSG00000024068.8 ENSMUSG00000024068 ENSMUST00000233554 Spast protein_coding Interval_96461 chr2 123879844 123880738 + 0 NA Intergenic Intergenic 249665 ENSMUSG00000085496.1 ENSMUSG00000085496 ENSMUST00000129584 4930517E11Rik lincRNA Interval_7891 chr1 134405092 134406956 + 0 NA promoter-TSS (ENSMUSG00000026456.18) protein_coding-promoter-TSS (ENSMUSG00000026456.18) 465 ENSMUSG00000026456.18 ENSMUSG00000026456 ENSMUST00000172795 Cyb5r1 protein_coding Interval_55398 chr14 86676735 86677204 + 0 NA intron (ENSMUSG00000022021.14, intron 1 of 3) protein_coding-intron (ENSMUSG00000022021.14, intron 27 of 27) 30216 ENSMUSG00000115306.1 ENSMUSG00000115306 ENSMUST00000226731 Gm49159 TEC Interval_106027 chr3 90840861 90841849 + 0 NA Intergenic Intergenic 6899 ENSMUSG00000106174.1 ENSMUSG00000106174 ENSMUST00000200121 Gm43235 unprocessed_pseudogene Interval_23772 chr11 26086665 26087213 + 0 NA intron (ENSMUSG00000032985.15, intron 1 of 5) protein_coding-intron (ENSMUSG00000032985.15, intron 1 of 6) -115301 ENSMUSG00000099015.1 ENSMUSG00000099015 ENSMUST00000185114 Mir6372 miRNA Interval_11751 chr1 185193091 185194161 + 0 NA Intergenic Intergenic -49281 ENSMUSG00000077571.1 ENSMUSG00000077571 ENSMUST00000104383 Snora36b snoRNA Interval_61883 chr15 84922692 84924038 + 0 NA promoter-TSS (ENSMUSG00000016619.10) protein_coding-promoter-TSS (ENSMUSG00000016619.10) -84 ENSMUSG00000016619.10 ENSMUSG00000016619 ENSMUST00000230411 Nup50 protein_coding Interval_18797 chr10 90938504 90939501 + 0 NA intron (ENSMUSG00000058589.14, intron 21 of 25) protein_coding-intron (ENSMUSG00000058589.14, intron 7 of 11) -66739 ENSMUSG00000087966.1 ENSMUSG00000087966 ENSMUST00000157341 Gm25390 snRNA Interval_151070 chr7 118295492 118295707 + 0 NA Intergenic Intergenic 15738 ENSMUSG00000087922.1 ENSMUSG00000087922 ENSMUST00000157297 Gm23229 snRNA Interval_106593 chr3 97576153 97576551 + 0 NA intron (ENSMUSG00000028089.5, intron 14 of 15) protein_coding-intron (ENSMUSG00000028089.5, intron 15 of 22) -33580 ENSMUSG00000105004.1 ENSMUSG00000105004 ENSMUST00000198613 Gm43075 TEC Interval_143977 chr7 18737182 18737386 + 0 NA promoter-TSS (ENSMUSG00000109292.1) unprocessed_pseudogene-promoter-TSS (ENSMUSG00000109292.1) -163 ENSMUSG00000109292.1 ENSMUSG00000109292 ENSMUST00000207985 Gm44564 unprocessed_pseudogene Interval_52771 chr14 49688306 49688541 + 0 NA intron (ENSMUSG00000036242.15, intron 6 of 7) protein_coding-intron (ENSMUSG00000036242.15, intron 6 of 7) 25199 ENSMUSG00000082967.2 ENSMUSG00000082967 ENSMUST00000115992 Gm16082 processed_pseudogene Interval_138461 chr6 88423136 88423625 + 0 NA intron (ENSMUSG00000033216.9, intron 1 of 5) protein_coding-intron (ENSMUSG00000033216.9, intron 1 of 6) 17403 ENSMUSG00000084582.1 ENSMUSG00000084582 ENSMUST00000122633 Gm25178 misc_RNA Interval_121271 chr4 154553975 154554494 + 0 NA intron (ENSMUSG00000086565.1, intron 1 of 3) protein_coding-intron (ENSMUSG00000039410.16, intron 1 of 16) 3952 ENSMUSG00000086565.1 ENSMUSG00000086565 ENSMUST00000143888 Gm13133 antisense Interval_67525 chr16 50301326 50301656 + 0 NA intron (ENSMUSG00000022641.15, intron 3 of 16) protein_coding-intron (ENSMUSG00000022641.15, intron 3 of 15) 130818 ENSMUSG00000022641.15 ENSMUSG00000022641 ENSMUST00000130210 Bbx protein_coding Interval_156497 chr8 48744113 48744610 + 0 NA intron (ENSMUSG00000031561.16, intron 1 of 2) protein_coding-intron (ENSMUSG00000031561.16, intron 1 of 2) -99361 ENSMUSG00000100706.6 ENSMUSG00000100706 ENSMUST00000188936 Gm19744 processed_transcript Interval_78121 chr18 8605903 8607348 + 0 NA Intergenic Intergenic -72426 ENSMUSG00000117424.1 ENSMUSG00000117424 ENSMUST00000234206 Gm35232 processed_pseudogene Interval_25065 chr11 43602115 43602350 + 0 NA promoter-TSS (ENSMUSG00000020405.4) protein_coding-promoter-TSS (ENSMUSG00000020405.4) -692 ENSMUSG00000020405.4 ENSMUSG00000020405 ENSMUST00000020672 Fabp6 protein_coding Interval_78219 chr18 10274588 10276546 + 0 NA Intergenic Intergenic 13360 ENSMUSG00000117552.1 ENSMUSG00000117552 ENSMUST00000234693 Gm5686 processed_pseudogene Interval_137936 chr6 83512462 83513098 + 0 NA TTS (ENSMUSG00000059430.14) protein_coding-TTS (ENSMUSG00000059430.14) -22360 ENSMUSG00000014554.13 ENSMUSG00000014554 ENSMUST00000147060 Dguok protein_coding Interval_151498 chr7 123106871 123107111 + 0 NA intron (ENSMUSG00000110230.1, intron 2 of 2) lincRNA-intron (ENSMUSG00000110230.1, intron 2 of 2) -64655 ENSMUSG00000052707.8 ENSMUSG00000052707 ENSMUST00000206126 Tnrc6a protein_coding Interval_64751 chr16 15083933 15085647 + 0 NA Intergenic Intergenic 84468 ENSMUSG00000116317.1 ENSMUSG00000116317 ENSMUST00000230174 Gm49536 processed_pseudogene Interval_78377 chr18 12294783 12295590 + 0 NA intron (ENSMUSG00000057766.14, intron 1 of 8) protein_coding-intron (ENSMUSG00000057766.14, intron 1 of 8) 7782 ENSMUSG00000082051.1 ENSMUSG00000082051 ENSMUST00000119574 Gm16072 processed_pseudogene Interval_129330 chr5 119140810 119141017 + 0 NA Intergenic Intergenic 32679 ENSMUSG00000100573.1 ENSMUSG00000100573 ENSMUST00000190550 1700081H04Rik lincRNA Interval_117404 chr4 123526800 123527058 + 0 NA exon (ENSMUSG00000028649.21, exon 1 of 92) protein_coding-exon (ENSMUSG00000028649.21, exon 1 of 92) 36698 ENSMUSG00000089588.1 ENSMUSG00000089588 ENSMUST00000158963 Gm23548 misc_RNA Interval_83938 chr19 5715874 5716749 + 0 NA TTS (ENSMUSG00000024937.15) protein_coding-TTS (ENSMUSG00000024937.15) 1392 ENSMUSG00000024937.15 ENSMUSG00000024937 ENSMUST00000237868 Ehbp1l1 protein_coding Interval_97208 chr2 132252461 132253582 + 0 NA promoter-TSS (ENSMUSG00000087377.1) antisense-promoter-TSS (ENSMUSG00000087377.1) -336 ENSMUSG00000087377.1 ENSMUSG00000087377 ENSMUST00000124336 AV099323 antisense Interval_112478 chr4 41497190 41498313 + 0 NA exon (ENSMUSG00000046312.4, exon 2 of 2) protein_coding-exon (ENSMUSG00000046312.4, exon 2 of 2) 4917 ENSMUSG00000046312.4 ENSMUSG00000046312 ENSMUST00000149596 Myorg protein_coding Interval_170244 chr9 106424986 106425298 + 0 NA Intergenic Intergenic -4420 ENSMUSG00000048758.14 ENSMUSG00000048758 ENSMUST00000214067 Rpl29 protein_coding Interval_56306 chr14 116948082 116948316 + 0 NA intron (ENSMUSG00000058571.11, intron 1 of 9) protein_coding-intron (ENSMUSG00000058571.11, intron 1 of 8) 22668 ENSMUSG00000058571.11 ENSMUSG00000058571 ENSMUST00000078849 Gpc6 protein_coding Interval_105856 chr3 89751708 89753558 + 0 NA exon (ENSMUSG00000027950.7, exon 6 of 6) protein_coding-exon (ENSMUSG00000027950.7, exon 6 of 6) 11975 ENSMUSG00000027950.7 ENSMUSG00000027950 ENSMUST00000029562 Chrnb2 protein_coding Interval_145754 chr7 38060815 38061872 + 0 NA intron (ENSMUSG00000108334.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000108726.1, intron 1 of 3) 357 ENSMUSG00000108726.1 ENSMUSG00000108726 ENSMUST00000205632 Gm30684 lincRNA Interval_173116 chrX 72328549 72329426 + 0 NA Intergenic Intergenic -54184 ENSMUSG00000031340.8 ENSMUSG00000031340 ENSMUST00000153740 Gabre protein_coding Interval_100402 chr2 168841398 168842700 + 0 NA Intergenic Intergenic 40119 ENSMUSG00000077761.1 ENSMUSG00000077761 ENSMUST00000104573 Gm25214 snoRNA Interval_149380 chr7 97907968 97908721 + 0 NA intron (ENSMUSG00000030774.13, intron 6 of 6) protein_coding-intron (ENSMUSG00000030774.13, intron 14 of 14) -9901 ENSMUSG00000108424.1 ENSMUSG00000108424 ENSMUST00000206161 Gm44590 processed_pseudogene Interval_161478 chr8 120633837 120634891 + 0 NA promoter-TSS (ENSMUSG00000043687.15) protein_coding-promoter-TSS (ENSMUSG00000043687.15) -9586 ENSMUSG00000097500.1 ENSMUSG00000097500 ENSMUST00000181474 Gm26537 antisense Interval_168800 chr9 87178743 87179102 + 0 NA intron (ENSMUSG00000042761.14, intron 4 of 4) protein_coding-intron (ENSMUSG00000042761.14, intron 3 of 3) 10491 ENSMUSG00000102830.1 ENSMUSG00000102830 ENSMUST00000194991 Gm37012 TEC Interval_118791 chr4 133729542 133730484 + 0 NA intron (ENSMUSG00000007880.16, intron 1 of 19) protein_coding-intron (ENSMUSG00000007880.16, intron 1 of 19) -9237 ENSMUSG00000007880.16 ENSMUSG00000007880 ENSMUST00000139709 Arid1a protein_coding Interval_100572 chr2 170183860 170185517 + 0 NA Intergenic Intergenic -36585 ENSMUSG00000052056.14 ENSMUSG00000052056 ENSMUST00000149318 Zfp217 protein_coding Interval_15204 chr10 43339779 43340000 + 0 NA intron (ENSMUSG00000038240.13, intron 2 of 2) protein_coding-intron (ENSMUSG00000038240.13, intron 2 of 7) 20529 ENSMUSG00000089673.1 ENSMUSG00000089673 ENSMUST00000159442 Gm16546 processed_pseudogene Interval_66366 chr16 33428090 33429058 + 0 NA intron (ENSMUSG00000022811.17, intron 3 of 7) protein_coding-intron (ENSMUSG00000022811.17, intron 3 of 8) 47711 ENSMUSG00000022811.17 ENSMUSG00000022811 ENSMUST00000089677 Zfp148 protein_coding Interval_116489 chr4 114611274 114611834 + 0 NA exon (ENSMUSG00000070867.4, exon 7 of 7) protein_coding-exon (ENSMUSG00000070867.4, exon 7 of 7) 61786 ENSMUSG00000100998.1 ENSMUSG00000100998 ENSMUST00000189251 Gm28864 lincRNA Interval_19550 chr10 103027962 103029765 + 0 NA promoter-TSS (ENSMUSG00000036602.14) protein_coding-promoter-TSS (ENSMUSG00000036602.14) 253 ENSMUSG00000036602.14 ENSMUSG00000036602 ENSMUST00000218508 Alx1 protein_coding Interval_72872 chr17 32829422 32830632 + 0 NA intron (ENSMUSG00000095253.4, intron 1 of 3) protein_coding-intron (ENSMUSG00000095253.4, intron 1 of 2) 234 ENSMUSG00000095253.4 ENSMUSG00000095253 ENSMUST00000201499 Zfp799 protein_coding Interval_103737 chr3 52212784 52214563 + 0 NA intron (ENSMUSG00000103655.1, intron 2 of 3) lincRNA-intron (ENSMUSG00000103655.1, intron 2 of 3) 8324 ENSMUSG00000103655.1 ENSMUSG00000103655 ENSMUST00000193679 Gm37202 lincRNA Interval_7824 chr1 133924108 133924771 + 0 NA Intergenic Intergenic -3028 ENSMUSG00000041577.5 ENSMUSG00000041577 ENSMUST00000127583 Prelp protein_coding Interval_89264 chr2 18623705 18624010 + 0 NA Intergenic Intergenic 18245 ENSMUSG00000082943.1 ENSMUSG00000082943 ENSMUST00000117996 Gm13355 processed_pseudogene Interval_11651 chr1 183934434 183934795 + 0 NA Intergenic Intergenic 6209 ENSMUSG00000102743.1 ENSMUSG00000102743 ENSMUST00000193891 Gm38108 lincRNA Interval_40469 chr12 105053846 105054542 + 0 NA Intergenic Intergenic 21506 ENSMUSG00000021102.4 ENSMUSG00000021102 ENSMUST00000220494 Glrx5 protein_coding Interval_10869 chr1 176355128 176355750 + 0 NA Intergenic Intergenic -15796 ENSMUSG00000102446.1 ENSMUSG00000102446 ENSMUST00000193904 Gm17965 processed_pseudogene Interval_26930 chr11 61647461 61648004 + 0 NA Intergenic Intergenic -21314 ENSMUSG00000004837.2 ENSMUSG00000004837 ENSMUST00000155380 Grap protein_coding Interval_164741 chr9 40963564 40964643 + 0 NA promoter-TSS (ENSMUSG00000032023.7) protein_coding-promoter-TSS (ENSMUSG00000032023.7) -33677 ENSMUSG00000111346.1 ENSMUSG00000111346 ENSMUST00000217265 Gm18586 processed_pseudogene Interval_81640 chr18 62755927 62756412 + 0 NA exon (ENSMUSG00000041789.7, exon 1 of 2) lincRNA-exon (ENSMUSG00000041789.7, exon 1 of 2) 146 ENSMUSG00000041789.7 ENSMUSG00000041789 ENSMUST00000048109 2700046A07Rik lincRNA Interval_104462 chr3 65982171 65982397 + 0 NA Intergenic Intergenic 7469 ENSMUSG00000103641.1 ENSMUSG00000103641 ENSMUST00000194681 Gm19024 processed_pseudogene Interval_46015 chr13 60122659 60122911 + 0 NA Intergenic Intergenic 13670 ENSMUSG00000114531.1 ENSMUSG00000114531 ENSMUST00000225586 A530065N20Rik lincRNA Interval_140717 chr6 120822213 120823453 + 0 NA promoter-TSS (ENSMUSG00000019210.10) protein_coding-promoter-TSS (ENSMUSG00000019210.10) -141 ENSMUSG00000019210.10 ENSMUSG00000019210 ENSMUST00000204699 Atp6v1e1 protein_coding Interval_30414 chr11 94231688 94231979 + 0 NA Intergenic Intergenic 14172 ENSMUSG00000044177.4 ENSMUSG00000044177 ENSMUST00000131352 Wfikkn2 protein_coding Interval_96540 chr2 125513189 125513526 + 0 NA Intergenic Intergenic -7285 ENSMUSG00000027204.13 ENSMUSG00000027204 ENSMUST00000148272 Fbn1 protein_coding Interval_42988 chr13 22352714 22352986 + 0 NA intron (ENSMUSG00000095125.2, intron 1 of 1) protein_coding-intron (ENSMUSG00000095125.2, intron 1 of 1) 2486 ENSMUSG00000095125.2 ENSMUSG00000095125 ENSMUST00000091733 Vmn1r198 protein_coding Interval_159804 chr8 103852996 103853395 + 0 NA Intergenic Intergenic -217954 ENSMUSG00000110019.1 ENSMUSG00000110019 ENSMUST00000211125 Gm8748 processed_pseudogene Interval_143242 chr7 4704424 4705385 + 0 NA intron (ENSMUSG00000035390.16, intron 9 of 9) protein_coding-intron (ENSMUSG00000035390.16, intron 9 of 18) 13824 ENSMUSG00000035390.16 ENSMUSG00000035390 ENSMUST00000123637 Brsk1 protein_coding Interval_116352 chr4 110119380 110120114 + 0 NA Intergenic Intergenic 141694 ENSMUSG00000047143.3 ENSMUSG00000047143 ENSMUST00000061187 Dmrta2 protein_coding Interval_129576 chr5 121069971 121070906 + 0 NA Intergenic Intergenic -60358 ENSMUSG00000029608.10 ENSMUSG00000029608 ENSMUST00000200792 Rph3a protein_coding Interval_120017 chr4 141387235 141387718 + 0 NA intron (ENSMUSG00000033770.13, intron 15 of 18) protein_coding-intron (ENSMUSG00000033770.13, intron 16 of 19) 7351 ENSMUSG00000033770.13 ENSMUSG00000033770 ENSMUST00000133676 Clcnka protein_coding Interval_152786 chr7 137516520 137517587 + 0 NA Intergenic Intergenic 47535 ENSMUSG00000109973.1 ENSMUSG00000109973 ENSMUST00000209816 Gm45397 lincRNA Interval_147358 chr7 66090767 66092356 + 0 NA Intergenic Intergenic 11883 ENSMUSG00000075701.9 ENSMUSG00000075701 ENSMUST00000206044 Selenos protein_coding Interval_62051 chr15 86112754 86113991 + 0 NA intron (ENSMUSG00000035900.18, intron 3 of 18) protein_coding-intron (ENSMUSG00000035900.18, intron 3 of 18) -23312 ENSMUSG00000089680.1 ENSMUSG00000089680 ENSMUST00000159271 Gm15722 antisense Interval_44902 chr13 49599834 49600104 + 0 NA intron (ENSMUSG00000021391.10, intron 5 of 5) protein_coding-intron (ENSMUSG00000021391.10, intron 5 of 7) -8077 ENSMUSG00000021390.6 ENSMUSG00000021390 ENSMUST00000021822 Ogn protein_coding Interval_7102 chr1 125814765 125815048 + 0 NA intron (ENSMUSG00000026343.6, intron 1 of 1) protein_coding-intron (ENSMUSG00000026343.6, intron 1 of 1) -25097 ENSMUSG00000026343.6 ENSMUSG00000026343 ENSMUST00000159359 Gpr39 protein_coding Interval_166569 chr9 60978162 60978561 + 0 NA Intergenic Intergenic -38708 ENSMUSG00000111290.1 ENSMUSG00000111290 ENSMUST00000216854 Gm5122 lincRNA Interval_51557 chr14 30133527 30134164 + 0 NA intron (ENSMUSG00000015968.18, intron 9 of 40) protein_coding-intron (ENSMUSG00000015968.18, intron 10 of 48) 39083 ENSMUSG00000118437.1 ENSMUSG00000118437 ENSMUST00000238444 Gm50467 antisense Interval_135092 chr6 35330220 35332387 + 0 NA intron (ENSMUSG00000107341.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000107341.1, intron 1 of 2) 457 ENSMUSG00000107341.1 ENSMUSG00000107341 ENSMUST00000201560 1700065J11Rik lincRNA Interval_47262 chr13 80041398 80041866 + 0 NA intron (ENSMUSG00000100168.2, intron 1 of 2) lincRNA-intron (ENSMUSG00000100168.2, intron 1 of 2) 57786 ENSMUSG00000114287.1 ENSMUSG00000114287 ENSMUST00000224279 Gm5197 processed_pseudogene Interval_163116 chr9 15371804 15372496 + 0 NA Intergenic Intergenic -9217 ENSMUSG00000111763.1 ENSMUSG00000111763 ENSMUST00000217087 Gm34973 lincRNA Interval_128483 chr5 113588396 113588925 + 0 NA exon (ENSMUSG00000063430.9, exon 9 of 9) protein_coding-exon (ENSMUSG00000063430.9, exon 9 of 9) 9872 ENSMUSG00000063430.9 ENSMUSG00000063430 ENSMUST00000198673 Wscd2 protein_coding Interval_76275 chr17 78663795 78664746 + 0 NA intron (ENSMUSG00000024077.15, intron 11 of 17) protein_coding-intron (ENSMUSG00000024077.15, intron 9 of 15) 72926 ENSMUSG00000024077.15 ENSMUSG00000024077 ENSMUST00000145480 Strn protein_coding Interval_72491 chr17 30155477 30156130 + 0 NA intron (ENSMUSG00000044477.12, intron 2 of 3) protein_coding-intron (ENSMUSG00000044477.12, intron 3 of 4) -9703 ENSMUSG00000117947.1 ENSMUSG00000117947 ENSMUST00000237534 Gm50226 TEC Interval_73437 chr17 37245551 37247194 + 0 NA promoter-TSS (ENSMUSG00000092591.1) processed_transcript-promoter-TSS (ENSMUSG00000092591.1) -1978 ENSMUSG00000092591.1 ENSMUSG00000092591 ENSMUST00000174168 Gm20429 processed_transcript Interval_87279 chr19 47356398 47356986 + 0 NA intron (ENSMUSG00000053617.12, intron 5 of 13) protein_coding-intron (ENSMUSG00000053617.12, intron 5 of 14) 53667 ENSMUSG00000053617.12 ENSMUSG00000053617 ENSMUST00000237828 Sh3pxd2a protein_coding Interval_64613 chr16 13667667 13668414 + 0 NA promoter-TSS (ENSMUSG00000022685.9) protein_coding-promoter-TSS (ENSMUSG00000022685.9) 98 ENSMUSG00000022685.9 ENSMUSG00000022685 ENSMUST00000229251 Parn protein_coding Interval_20817 chr10 121256223 121256975 + 0 NA Intergenic Intergenic 13597 ENSMUSG00000112871.1 ENSMUSG00000112871 ENSMUST00000219186 Gm35404 lincRNA Interval_50032 chr13 119846903 119847651 + 0 NA TTS (ENSMUSG00000095514.2) protein_coding-TTS (ENSMUSG00000095514.2) 1929 ENSMUSG00000095514.2 ENSMUSG00000095514 ENSMUST00000195797 D13Ertd608e protein_coding Interval_17045 chr10 70837425 70837957 + 0 NA intron (ENSMUSG00000112870.1, intron 2 of 2) lincRNA-intron (ENSMUSG00000112870.1, intron 2 of 2) 6936 ENSMUSG00000112870.1 ENSMUSG00000112870 ENSMUST00000218006 Gm40689 lincRNA Interval_122100 chr5 17001934 17002127 + 0 NA Intergenic Intergenic 20994 ENSMUSG00000105706.1 ENSMUSG00000105706 ENSMUST00000197388 Gm42855 processed_pseudogene Interval_89553 chr2 22684254 22685165 + 0 NA intron (ENSMUSG00000026787.3, intron 13 of 15) protein_coding-intron (ENSMUSG00000026787.3, intron 13 of 15) 18051 ENSMUSG00000092811.1 ENSMUSG00000092811 ENSMUST00000175070 Gm23636 miRNA Interval_137625 chr6 76378657 76379599 + 0 NA Intergenic Intergenic 76737 ENSMUSG00000107612.1 ENSMUSG00000107612 ENSMUST00000205140 Gm44163 processed_pseudogene Interval_124097 chr5 38259893 38260929 + 0 NA promoter-TSS (ENSMUSG00000067365.10) protein_coding-promoter-TSS (ENSMUSG00000067365.10) 40 ENSMUSG00000067365.10 ENSMUSG00000067365 ENSMUST00000142277 Tmem128 protein_coding Interval_23465 chr11 22782715 22783794 + 0 NA intron (ENSMUSG00000051650.11, intron 3 of 5) protein_coding-intron (ENSMUSG00000051650.11, intron 3 of 5) 3993 ENSMUSG00000082576.1 ENSMUSG00000082576 ENSMUST00000118614 Gm12058 processed_pseudogene Interval_104222 chr3 61002213 61003759 + 0 NA exon (ENSMUSG00000027765.6, exon 1 of 2) protein_coding-exon (ENSMUSG00000027765.6, exon 1 of 2) 187 ENSMUSG00000027765.6 ENSMUSG00000027765 ENSMUST00000193943 P2ry1 protein_coding Interval_116628 chr4 116167604 116167772 + 0 NA promoter-TSS (ENSMUSG00000028699.9) protein_coding-promoter-TSS (ENSMUSG00000028699.9) -2855 ENSMUSG00000028699.9 ENSMUSG00000028699 ENSMUST00000154534 Tspan1 protein_coding Interval_5806 chr1 92044436 92044673 + 0 NA intron (ENSMUSG00000026313.16, intron 4 of 4) protein_coding-intron (ENSMUSG00000026313.16, intron 2 of 25) -22457 ENSMUSG00000102565.1 ENSMUSG00000102565 ENSMUST00000192836 Gm37036 TEC Interval_119205 chr4 136193012 136194180 + 0 NA exon (ENSMUSG00000018983.9, exon 7 of 7) protein_coding-exon (ENSMUSG00000018983.9, exon 7 of 7) -12769 ENSMUSG00000036995.7 ENSMUSG00000036995 ENSMUST00000047526 Asap3 protein_coding Interval_17127 chr10 71496688 71497715 + 0 NA Intergenic Intergenic -11681 ENSMUSG00000112108.1 ENSMUSG00000112108 ENSMUST00000219700 4930551I15Rik lincRNA Interval_80187 chr18 38111598 38112036 + 0 NA Intergenic Intergenic 88288 ENSMUSG00000118056.1 ENSMUSG00000118056 ENSMUST00000236681 Gm30093 lincRNA Interval_171160 chr9 114830398 114830601 + 0 NA intron (ENSMUSG00000041012.4, intron 1 of 1) protein_coding-intron (ENSMUSG00000041012.4, intron 1 of 3) -7674 ENSMUSG00000084638.1 ENSMUSG00000084638 ENSMUST00000122689 Gm23889 snRNA Interval_36386 chr12 43036353 43037744 + 0 NA Intergenic Intergenic -21589 ENSMUSG00000112407.1 ENSMUSG00000112407 ENSMUST00000219475 Gm33340 lincRNA Interval_66617 chr16 35689672 35689983 + 0 NA Intergenic Intergenic 31242 ENSMUSG00000052133.16 ENSMUSG00000052133 ENSMUST00000128966 Sema5b protein_coding Interval_146614 chr7 48285953 48287027 + 0 NA Intergenic Intergenic -6703 ENSMUSG00000099952.1 ENSMUSG00000099952 ENSMUST00000185677 Gm18356 unprocessed_pseudogene Interval_29558 chr11 84900913 84901195 + 0 NA intron (ENSMUSG00000020527.14, intron 14 of 21) protein_coding-intron (ENSMUSG00000020527.14, intron 16 of 24) 7967 ENSMUSG00000092644.1 ENSMUSG00000092644 ENSMUST00000174903 Gm23564 miRNA Interval_13617 chr10 20204811 20205702 + 0 NA intron (ENSMUSG00000019996.17, intron 1 of 5) protein_coding-intron (ENSMUSG00000019996.17, intron 1 of 17) -3234 ENSMUSG00000111356.1 ENSMUSG00000111356 ENSMUST00000216127 Rpl32l processed_pseudogene Interval_20314 chr10 116830200 116830498 + 0 NA intron (ENSMUSG00000034057.8, intron 9 of 24) protein_coding-intron (ENSMUSG00000034057.8, intron 9 of 24) 66570 ENSMUSG00000034057.8 ENSMUSG00000034057 ENSMUST00000048229 Myrfl protein_coding Interval_12068 chr1 189443466 189444096 + 0 NA Intergenic Intergenic 50431 ENSMUSG00000093791.1 ENSMUSG00000093791 ENSMUST00000180257 Gm24092 miRNA Interval_124130 chr5 38553505 38554932 + 0 NA intron (ENSMUSG00000005103.12, intron 2 of 4) protein_coding-intron (ENSMUSG00000005103.12, intron 2 of 14) 7760 ENSMUSG00000064419.1 ENSMUSG00000064419 ENSMUST00000082485 Gm22249 snRNA Interval_136761 chr6 59198819 59199711 + 0 NA Intergenic Intergenic -6012 ENSMUSG00000107987.1 ENSMUSG00000107987 ENSMUST00000204516 Gm43905 processed_pseudogene Interval_46545 chr13 66994209 66994437 + 0 NA intron (ENSMUSG00000021518.4, intron 8 of 8) protein_coding-intron (ENSMUSG00000021518.4, intron 11 of 12) 13270 ENSMUSG00000114362.1 ENSMUSG00000114362 ENSMUST00000224762 4933433G19Rik antisense Interval_104958 chr3 79275964 79276750 + 0 NA intron (ENSMUSG00000062232.14, intron 1 of 29) protein_coding-intron (ENSMUSG00000062232.14, intron 1 of 29) 10160 ENSMUSG00000062232.14 ENSMUSG00000062232 ENSMUST00000136126 Rapgef2 protein_coding Interval_4574 chr1 75191470 75192675 + 0 NA promoter-TSS (ENSMUSG00000033124.16) protein_coding-promoter-TSS (ENSMUSG00000033124.16) -88 ENSMUSG00000026199.17 ENSMUSG00000026199 ENSMUST00000127860 Ankzf1 protein_coding Interval_105813 chr3 89468129 89468929 + 0 NA exon (ENSMUSG00000027952.16, exon 5 of 5) protein_coding-exon (ENSMUSG00000027952.16, exon 5 of 5) 13988 ENSMUSG00000027952.16 ENSMUSG00000027952 ENSMUST00000184515 Pmvk protein_coding Interval_96604 chr2 126360891 126362044 + 0 NA intron (ENSMUSG00000060131.11, intron 21 of 27) protein_coding-intron (ENSMUSG00000060131.11, intron 21 of 27) -92104 ENSMUSG00000089480.1 ENSMUSG00000089480 ENSMUST00000158855 Gm24739 misc_RNA Interval_5864 chr1 92752621 92752925 + 0 NA Intergenic Intergenic 7707 ENSMUSG00000099665.1 ENSMUSG00000099665 ENSMUST00000187845 Gm29482 lincRNA Interval_90180 chr2 28777607 28778934 + 0 NA intron (ENSMUSG00000026807.8, intron 11 of 12) protein_coding-intron (ENSMUSG00000026807.8, intron 11 of 12) 15299 ENSMUSG00000082796.1 ENSMUSG00000082796 ENSMUST00000121089 Gm13385 processed_pseudogene Interval_147242 chr7 65026467 65026782 + 0 NA intron (ENSMUSG00000030518.17, intron 1 of 3) protein_coding-intron (ENSMUSG00000030518.17, intron 1 of 9) -70048 ENSMUSG00000093212.1 ENSMUSG00000093212 ENSMUST00000175471 Gm25249 miRNA Interval_69073 chr16 90433428 90434130 + 0 NA intron (ENSMUSG00000053414.8, intron 2 of 10) protein_coding-intron (ENSMUSG00000053414.8, intron 2 of 10) 33235 ENSMUSG00000053414.8 ENSMUSG00000053414 ENSMUST00000231603 Hunk protein_coding Interval_174502 chrX 153695938 153696426 + 0 NA promoter-TSS (ENSMUSG00000041633.14) protein_coding-promoter-TSS (ENSMUSG00000041633.14) 209 ENSMUSG00000041633.14 ENSMUSG00000041633 ENSMUST00000112572 Kctd12b protein_coding Interval_37295 chr12 64909498 64909933 + 0 NA Intergenic Intergenic -11069 ENSMUSG00000047227.5 ENSMUSG00000047227 ENSMUST00000220928 Gm527 protein_coding Interval_133616 chr6 7690492 7691078 + 0 NA intron (ENSMUSG00000029752.12, intron 1 of 11) protein_coding-intron (ENSMUSG00000029752.12, intron 1 of 11) 2087 ENSMUSG00000029752.12 ENSMUSG00000029752 ENSMUST00000148349 Asns protein_coding Interval_161451 chr8 120529269 120529722 + 0 NA intron (ENSMUSG00000031822.20, intron 1 of 15) protein_coding-intron (ENSMUSG00000031822.20, intron 1 of 15) 8231 ENSMUSG00000102737.1 ENSMUSG00000102737 ENSMUST00000192004 1700016A09Rik TEC Interval_93412 chr2 72931517 72933012 + 0 NA Intergenic Intergenic 18723 ENSMUSG00000092851.1 ENSMUSG00000092851 ENSMUST00000175110 Gm25960 miRNA Interval_12685 chr10 4319158 4319511 + 0 NA intron (ENSMUSG00000038587.10, intron 2 of 3) protein_coding-intron (ENSMUSG00000038587.10, intron 2 of 3) -15211 ENSMUSG00000038587.10 ENSMUSG00000038587 ENSMUST00000215696 Akap12 protein_coding Interval_80012 chr18 36633767 36634009 + 0 NA intron (ENSMUSG00000024483.19, intron 18 of 33) protein_coding-intron (ENSMUSG00000024483.19, intron 18 of 33) -13972 ENSMUSG00000117942.1 ENSMUSG00000117942 ENSMUST00000140061 Maskbp3 protein_coding Interval_140141 chr6 114786120 114787195 + 0 NA intron (ENSMUSG00000030314.16, intron 20 of 20) protein_coding-intron (ENSMUSG00000030314.16, intron 18 of 18) -2733 ENSMUSG00000107395.1 ENSMUSG00000107395 ENSMUST00000203217 Gm44331 processed_pseudogene Interval_132255 chr5 143651922 143652131 + 0 NA intron (ENSMUSG00000018001.18, intron 1 of 12) protein_coding-intron (ENSMUSG00000018001.18, intron 1 of 12) 29525 ENSMUSG00000018001.18 ENSMUSG00000018001 ENSMUST00000110727 Cyth3 protein_coding Interval_135470 chr6 39473987 39475337 + 0 NA intron (ENSMUSG00000038456.9, intron 5 of 10) protein_coding-intron (ENSMUSG00000038456.9, intron 13 of 18) 11794 ENSMUSG00000038456.9 ENSMUSG00000038456 ENSMUST00000154149 Dennd2a protein_coding Interval_61400 chr15 81348450 81348653 + 0 NA intron (ENSMUSG00000022404.8, intron 1 of 4) protein_coding-intron (ENSMUSG00000022404.8, intron 1 of 8) 12226 ENSMUSG00000022404.8 ENSMUSG00000022404 ENSMUST00000231078 Slc25a17 protein_coding Interval_37882 chr12 72779861 72780338 + 0 NA intron (ENSMUSG00000021096.11, intron 1 of 2) protein_coding-intron (ENSMUSG00000021096.11, intron 1 of 5) 18784 ENSMUSG00000021096.11 ENSMUSG00000021096 ENSMUST00000222920 Ppm1a protein_coding Interval_94924 chr2 101814760 101815908 + 0 NA intron (ENSMUSG00000032841.15, intron 1 of 3) protein_coding-intron (ENSMUSG00000032841.15, intron 2 of 6) -17627 ENSMUSG00000032841.15 ENSMUSG00000032841 ENSMUST00000127358 Prr5l protein_coding Interval_153394 chr7 144390177 144391444 + 0 NA intron (ENSMUSG00000085745.1, intron 2 of 2) protein_coding-intron (ENSMUSG00000037541.22, intron 2 of 9) 16123 ENSMUSG00000085745.1 ENSMUSG00000085745 ENSMUST00000125355 Gm14372 antisense Interval_42219 chr13 10071454 10071744 + 0 NA promoter-TSS (ENSMUSG00000113680.1) sense_intronic-promoter-TSS (ENSMUSG00000113680.1) -733 ENSMUSG00000113680.1 ENSMUSG00000113680 ENSMUST00000221804 Gm47405 sense_intronic Interval_45202 chr13 53169883 53170360 + 0 NA intron (ENSMUSG00000021464.14, intron 1 of 8) protein_coding-intron (ENSMUSG00000021464.14, intron 1 of 8) 105537 ENSMUSG00000021464.14 ENSMUSG00000021464 ENSMUST00000149299 Ror2 protein_coding Interval_70617 chr17 12367295 12367899 + 0 NA Intergenic Intergenic -11062 ENSMUSG00000059481.5 ENSMUSG00000059481 ENSMUST00000232767 Plg protein_coding Interval_114106 chr4 63472687 63472896 + 0 NA promoter-TSS (ENSMUSG00000039137.18) protein_coding-promoter-TSS (ENSMUSG00000039137.18) -39469 ENSMUSG00000039137.18 ENSMUSG00000039137 ENSMUST00000140720 Whrn protein_coding Interval_161117 chr8 117589338 117590164 + 0 NA intron (ENSMUSG00000034330.10, intron 16 of 32) protein_coding-intron (ENSMUSG00000034330.10, intron 16 of 32) -42725 ENSMUSG00000092818.2 ENSMUSG00000092818 ENSMUST00000175077 Gm27361 miRNA Interval_147236 chr7 64916282 64916840 + 0 NA intron (ENSMUSG00000030518.17, intron 2 of 9) protein_coding-intron (ENSMUSG00000030518.17, intron 2 of 9) 8999 ENSMUSG00000030518.17 ENSMUSG00000030518 ENSMUST00000144535 Fam189a1 protein_coding Interval_141764 chr6 134305145 134306109 + 0 NA Intergenic Intergenic -59261 ENSMUSG00000108263.1 ENSMUSG00000108263 ENSMUST00000204426 1700051K13Rik TEC Interval_53424 chr14 57344643 57345394 + 0 NA intron (ENSMUSG00000021947.11, intron 3 of 3) protein_coding-intron (ENSMUSG00000021947.11, intron 3 of 7) -11533 ENSMUSG00000077497.1 ENSMUSG00000077497 ENSMUST00000104309 Gm23593 snoRNA Interval_76514 chr17 80692141 80692647 + 0 NA intron (ENSMUSG00000024242.15, intron 1 of 1) protein_coding-intron (ENSMUSG00000024242.15, intron 1 of 33) -35737 ENSMUSG00000054957.5 ENSMUSG00000054957 ENSMUST00000068277 Gm9959 pseudogene Interval_113137 chr4 48570381 48571075 + 0 NA Intergenic Intergenic 30182 ENSMUSG00000039693.11 ENSMUSG00000039693 ENSMUST00000132360 Msantd3 protein_coding Interval_17687 chr10 79505925 79506174 + 0 NA Intergenic Intergenic 25041 ENSMUSG00000098414.1 ENSMUSG00000098414 ENSMUST00000184212 Mir6909 miRNA Interval_94514 chr2 91812182 91812419 + 0 NA intron (ENSMUSG00000040506.16, intron 1 of 2) protein_coding-intron (ENSMUSG00000040506.16, intron 8 of 16) 82118 ENSMUSG00000040506.16 ENSMUSG00000040506 ENSMUST00000142224 Ambra1 protein_coding Interval_123958 chr5 36876436 36877287 + 0 NA promoter-TSS (ENSMUSG00000087487.1) antisense-promoter-TSS (ENSMUSG00000087487.1) 18 ENSMUSG00000087487.1 ENSMUSG00000087487 ENSMUST00000152862 Ppp2r2cos antisense Interval_90584 chr2 31270452 31271458 + 0 NA intron (ENSMUSG00000062661.6, intron 2 of 7) protein_coding-intron (ENSMUSG00000062661.6, intron 2 of 7) 24789 ENSMUSG00000062661.6 ENSMUSG00000062661 ENSMUST00000150670 Ncs1 protein_coding Interval_80817 chr18 47495646 47496508 + 0 NA Intergenic Intergenic 18573 ENSMUSG00000118180.1 ENSMUSG00000118180 ENSMUST00000236646 Gm50223 lincRNA Interval_47691 chr13 91359456 91359753 + 0 NA Intergenic Intergenic 14690 ENSMUSG00000099340.1 ENSMUSG00000099340 ENSMUST00000188207 Gm29540 sense_intronic Interval_127783 chr5 107789420 107790168 + 0 NA intron (ENSMUSG00000011831.16, intron 5 of 7) protein_coding-intron (ENSMUSG00000011831.16, intron 15 of 17) 17913 ENSMUSG00000106288.1 ENSMUSG00000106288 ENSMUST00000198605 Gm43593 TEC Interval_61755 chr15 83856969 83857674 + 0 NA TTS (ENSMUSG00000041708.12) protein_coding-TTS (ENSMUSG00000041708.12) 65307 ENSMUSG00000041708.12 ENSMUSG00000041708 ENSMUST00000148868 Mpped1 protein_coding Interval_102689 chr3 30042495 30042706 + 0 NA intron (ENSMUSG00000085702.8, intron 3 of 3) protein_coding-intron (ENSMUSG00000027684.16, intron 1 of 14) 25072 ENSMUSG00000085702.8 ENSMUSG00000085702 ENSMUST00000173827 Mecomos antisense Interval_129506 chr5 120620291 120621026 + 0 NA promoter-TSS (ENSMUSG00000029599.13) protein_coding-promoter-TSS (ENSMUSG00000029599.13) 6963 ENSMUSG00000107191.1 ENSMUSG00000107191 ENSMUST00000202387 Gm43579 antisense Interval_66041 chr16 31148548 31149562 + 0 NA intron (ENSMUSG00000049076.12, intron 3 of 21) protein_coding-intron (ENSMUSG00000049076.12, intron 3 of 21) -8815 ENSMUSG00000116943.1 ENSMUSG00000116943 ENSMUST00000231868 Gm18237 processed_pseudogene Interval_137679 chr6 78983932 78985131 + 0 NA Intergenic Intergenic -47513 ENSMUSG00000108072.1 ENSMUSG00000108072 ENSMUST00000204808 Gm20362 lincRNA Interval_112101 chr4 34686777 34687924 + 0 NA promoter-TSS (ENSMUSG00000028293.14) protein_coding-promoter-TSS (ENSMUSG00000028293.14) 46 ENSMUSG00000028293.14 ENSMUSG00000028293 ENSMUST00000154020 Slc35a1 protein_coding Interval_127383 chr5 103638694 103639003 + 0 NA Intergenic Intergenic 3623 ENSMUSG00000105018.1 ENSMUSG00000105018 ENSMUST00000196721 Gm43546 TEC Interval_71725 chr17 25708105 25708903 + 0 NA Intergenic Intergenic 3455 ENSMUSG00000117657.1 ENSMUSG00000117657 ENSMUST00000236265 Gm5836 processed_pseudogene Interval_97790 chr2 144101579 144101826 + 0 NA intron (ENSMUSG00000074758.10, intron 1 of 2) lincRNA-intron (ENSMUSG00000074758.10, intron 2 of 3) -32919 ENSMUSG00000086384.1 ENSMUSG00000086384 ENSMUST00000145504 Banf2os antisense Interval_61263 chr15 80334804 80335241 + 0 NA intron (ENSMUSG00000022416.15, intron 4 of 36) protein_coding-intron (ENSMUSG00000022416.15, intron 4 of 36) -54306 ENSMUSG00000022416.15 ENSMUSG00000022416 ENSMUST00000160175 Cacna1i protein_coding Interval_21437 chr10 128604908 128607385 + 0 NA Intergenic Intergenic -9255 ENSMUSG00000112068.1 ENSMUSG00000112068 ENSMUST00000217829 Gm9182 processed_pseudogene Interval_28238 chr11 74607836 74608045 + 0 NA intron (ENSMUSG00000038807.19, intron 1 of 25) protein_coding-intron (ENSMUSG00000038807.19, intron 1 of 25) 2975 ENSMUSG00000038807.19 ENSMUSG00000038807 ENSMUST00000145524 Rap1gap2 protein_coding Interval_146278 chr7 45098632 45099143 + 0 NA TTS (ENSMUSG00000109947.1) antisense-TTS (ENSMUSG00000109947.1) 4868 ENSMUSG00000003420.8 ENSMUSG00000003420 ENSMUST00000211535 Fcgrt protein_coding Interval_149258 chr7 96753902 96754880 + 0 NA intron (ENSMUSG00000048078.16, intron 11 of 32) protein_coding-intron (ENSMUSG00000048078.16, intron 13 of 32) -42250 ENSMUSG00000048078.16 ENSMUSG00000048078 ENSMUST00000147659 Tenm4 protein_coding Interval_100182 chr2 167512703 167513272 + 0 NA intron (ENSMUSG00000006418.17, intron 4 of 4) protein_coding-intron (ENSMUSG00000006418.17, intron 5 of 5) 9541 ENSMUSG00000006418.17 ENSMUSG00000006418 ENSMUST00000127939 Rnf114 protein_coding Interval_25290 chr11 46145863 46146596 + 0 NA exon (ENSMUSG00000011256.16, exon 23 of 23) protein_coding-exon (ENSMUSG00000011256.16, exon 23 of 23) 887 ENSMUSG00000086998.1 ENSMUSG00000086998 ENSMUST00000144915 Gm16033 antisense Interval_109847 chr3 148910971 148911252 + 0 NA intron (ENSMUSG00000028184.12, intron 2 of 19) protein_coding-intron (ENSMUSG00000028184.12, intron 2 of 2) -78041 ENSMUSG00000104786.1 ENSMUSG00000104786 ENSMUST00000196445 Gm43573 antisense Interval_159357 chr8 94043303 94043575 + 0 NA intron (ENSMUSG00000033009.15, intron 2 of 6) protein_coding-intron (ENSMUSG00000033009.15, intron 2 of 12) -5342 ENSMUSG00000110499.1 ENSMUSG00000110499 ENSMUST00000211865 Gm45873 TEC Interval_23960 chr11 28891490 28891821 + 0 NA intron (ENSMUSG00000020467.15, intron 4 of 10) protein_coding-intron (ENSMUSG00000020467.15, intron 4 of 10) -24012 ENSMUSG00000020467.15 ENSMUSG00000020467 ENSMUST00000139713 Efemp1 protein_coding Interval_82346 chr18 71561963 71562467 + 0 NA intron (ENSMUSG00000060534.16, intron 9 of 28) protein_coding-intron (ENSMUSG00000060534.16, intron 9 of 28) -654564 ENSMUSG00000118271.1 ENSMUSG00000118271 ENSMUST00000236972 Gm50262 processed_pseudogene Interval_28043 chr11 72428705 72430439 + 0 NA Intergenic Intergenic -5962 ENSMUSG00000040471.17 ENSMUSG00000040471 ENSMUST00000100903 Ggt6 protein_coding Interval_95429 chr2 109268674 109268875 + 0 NA intron (ENSMUSG00000057234.9, intron 2 of 6) protein_coding-intron (ENSMUSG00000057234.9, intron 2 of 5) 11974 ENSMUSG00000057234.9 ENSMUSG00000057234 ENSMUST00000145535 Mettl15 protein_coding Interval_45183 chr13 53001913 53002402 + 0 NA Intergenic Intergenic -14045 ENSMUSG00000113101.1 ENSMUSG00000113101 ENSMUST00000222317 Gm33424 lincRNA Interval_7845 chr1 134098894 134100287 + 0 NA promoter-TSS (ENSMUSG00000102380.1) TEC-promoter-TSS (ENSMUSG00000102380.1) -431 ENSMUSG00000102380.1 ENSMUSG00000102380 ENSMUST00000193617 Gm38140 TEC Interval_165729 chr9 51962862 51963805 + 0 NA exon (ENSMUSG00000032051.9, exon 1 of 4) protein_coding-exon (ENSMUSG00000032051.9, exon 1 of 4) -14626 ENSMUSG00000032051.9 ENSMUSG00000032051 ENSMUST00000214013 Fdx1 protein_coding Interval_18681 chr10 89259026 89259265 + 0 NA intron (ENSMUSG00000035189.17, intron 3 of 6) protein_coding-intron (ENSMUSG00000035189.17, intron 3 of 10) -1555 ENSMUSG00000035189.17 ENSMUSG00000035189 ENSMUST00000180843 Ano4 protein_coding Interval_73359 chr17 36702120 36702563 + 0 NA intron (ENSMUSG00000092298.1, intron 2 of 2) unprocessed_pseudogene-intron (ENSMUSG00000092298.1, intron 2 of 2) 868 ENSMUSG00000092298.1 ENSMUSG00000092298 ENSMUST00000172657 Gm8877 unprocessed_pseudogene Interval_66097 chr16 31579044 31579303 + 0 NA Intergenic Intergenic 14047 ENSMUSG00000116793.1 ENSMUSG00000116793 ENSMUST00000232216 Gm34256 lincRNA Interval_37247 chr12 62849863 62850303 + 0 NA Intergenic Intergenic 3980 ENSMUSG00000113590.1 ENSMUSG00000113590 ENSMUST00000223154 Gm48378 processed_pseudogene Interval_32719 chr11 109985997 109986227 + 0 NA intron (ENSMUSG00000020620.14, intron 1 of 37) protein_coding-intron (ENSMUSG00000020620.14, intron 1 of 38) 9631 ENSMUSG00000020620.14 ENSMUSG00000020620 ENSMUST00000106669 Abca8b protein_coding Interval_58651 chr15 36815058 36815443 + 0 NA Intergenic Intergenic -16479 ENSMUSG00000093021.1 ENSMUSG00000093021 ENSMUST00000175280 Gm25303 miRNA Interval_95421 chr2 109049730 109049985 + 0 NA Intergenic Intergenic 27170 ENSMUSG00000087544.1 ENSMUSG00000087544 ENSMUST00000153283 Gm13923 lincRNA Interval_116945 chr4 118355013 118355246 + 0 NA Intergenic Intergenic -4861 ENSMUSG00000006395.16 ENSMUSG00000006395 ENSMUST00000132882 Hyi polymorphic_pseudogene Interval_130288 chr5 125433691 125434683 + 0 NA promoter-TSS (ENSMUSG00000029480.13) protein_coding-promoter-TSS (ENSMUSG00000029480.13) -888 ENSMUSG00000106271.1 ENSMUSG00000106271 ENSMUST00000198475 Gm43752 processed_pseudogene Interval_46730 chr13 69687055 69687252 + 0 NA intron (ENSMUSG00000113299.1, intron 3 of 5) lincRNA-intron (ENSMUSG00000113299.1, intron 3 of 5) 10523 ENSMUSG00000113299.1 ENSMUSG00000113299 ENSMUST00000223164 Gm35618 lincRNA Interval_77800 chr18 3763236 3763670 + 0 NA Intergenic Intergenic 7351 ENSMUSG00000088480.1 ENSMUSG00000088480 ENSMUST00000157855 Gm23643 snRNA Interval_64779 chr16 15649801 15650086 + 0 NA intron (ENSMUSG00000022672.8, intron 3 of 21) protein_coding-intron (ENSMUSG00000022672.8, intron 3 of 85) 12077 ENSMUSG00000022672.8 ENSMUSG00000022672 ENSMUST00000023352 Prkdc protein_coding Interval_5118 chr1 85803913 85804716 + 0 NA intron (ENSMUSG00000036707.16, intron 2 of 9) protein_coding-intron (ENSMUSG00000036707.16, intron 2 of 9) 19601 ENSMUSG00000092932.2 ENSMUSG00000092932 ENSMUST00000175191 Gm22906 misc_RNA Interval_1665 chr1 30889403 30890098 + 0 NA Intergenic Intergenic -21212 ENSMUSG00000104315.1 ENSMUSG00000104315 ENSMUST00000192050 Gm37906 TEC Interval_94757 chr2 94034921 94036136 + 0 NA intron (ENSMUSG00000027195.10, intron 6 of 7) protein_coding-intron (ENSMUSG00000027195.10, intron 9 of 10) -24776 ENSMUSG00000040174.14 ENSMUSG00000040174 ENSMUST00000130289 Alkbh3 protein_coding Interval_118265 chr4 129923262 129923571 + 0 NA Intergenic Intergenic 17200 ENSMUSG00000086369.7 ENSMUSG00000086369 ENSMUST00000139190 E330017L17Rik lincRNA Interval_162031 chr8 124559028 124559770 + 0 NA exon (ENSMUSG00000031980.10, exon 3 of 5) protein_coding-exon (ENSMUSG00000031980.10, exon 3 of 5) 10307 ENSMUSG00000031980.10 ENSMUSG00000031980 ENSMUST00000063278 Agt protein_coding Interval_36295 chr12 40842370 40844688 + 0 NA intron (ENSMUSG00000035954.10, intron 51 of 51) protein_coding-intron (ENSMUSG00000035954.10, intron 52 of 52) -32008 ENSMUSG00000113435.1 ENSMUSG00000113435 ENSMUST00000221545 Gm19441 processed_pseudogene Interval_76448 chr17 80261686 80262724 + 0 NA intron (ENSMUSG00000035051.15, intron 11 of 15) protein_coding-intron (ENSMUSG00000035051.15, intron 10 of 22) 5637 ENSMUSG00000035051.15 ENSMUSG00000035051 ENSMUST00000234703 Dhx57 protein_coding Interval_139739 chr6 108259706 108260849 + 0 NA intron (ENSMUSG00000030102.11, intron 1 of 22) protein_coding-intron (ENSMUSG00000030102.11, intron 4 of 61) -74721 ENSMUSG00000030101.15 ENSMUSG00000030101 ENSMUST00000171697 Sumf1 protein_coding Interval_40283 chr12 103142237 103142773 + 0 NA intron (ENSMUSG00000021198.16, intron 4 of 5) protein_coding-intron (ENSMUSG00000021198.16, intron 35 of 46) 14316 ENSMUSG00000098628.1 ENSMUSG00000098628 ENSMUST00000183635 Gm27976 misc_RNA Interval_23141 chr11 20145149 20146427 + 0 NA intron (ENSMUSG00000085035.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000085035.1, intron 1 of 1) 556 ENSMUSG00000085035.1 ENSMUSG00000085035 ENSMUST00000156150 Gm12031 lincRNA Interval_99022 chr2 156709368 156709956 + 0 NA intron (ENSMUSG00000061689.15, intron 6 of 12) protein_coding-intron (ENSMUSG00000061689.15, intron 4 of 10) 11247 ENSMUSG00000086638.7 ENSMUSG00000086638 ENSMUST00000130089 4930405A21Rik processed_transcript Interval_17189 chr10 74612310 74613102 + 0 NA intron (ENSMUSG00000052613.16, intron 27 of 34) protein_coding-intron (ENSMUSG00000052613.16, intron 26 of 30) -208016 ENSMUSG00000112686.1 ENSMUSG00000112686 ENSMUST00000218638 Gm7034 processed_pseudogene Interval_66324 chr16 33157349 33158540 + 0 NA Intergenic Intergenic -17696 ENSMUSG00000089109.1 ENSMUSG00000089109 ENSMUST00000158484 Gm23916 ribozyme Interval_167927 chr9 74436274 74436590 + 0 NA Intergenic Intergenic -71369 ENSMUSG00000098313.1 ENSMUSG00000098313 ENSMUST00000183844 Nr1h2-ps processed_pseudogene Interval_55687 chr14 99045519 99046846 + 0 NA promoter-TSS (ENSMUSG00000022070.7) protein_coding-promoter-TSS (ENSMUSG00000022070.7) -48 ENSMUSG00000033186.9 ENSMUSG00000033186 ENSMUST00000227197 Mzt1 protein_coding Interval_70050 chr17 5006765 5007653 + 0 NA intron (ENSMUSG00000069729.14, intron 1 of 19) protein_coding-intron (ENSMUSG00000069729.14, intron 1 of 18) 12270 ENSMUSG00000069729.14 ENSMUSG00000069729 ENSMUST00000146703 Arid1b protein_coding Interval_159828 chr8 104140544 104140799 + 0 NA intron (ENSMUSG00000031871.9, intron 10 of 11) protein_coding-intron (ENSMUSG00000031871.9, intron 10 of 11) -12035 ENSMUSG00000109909.1 ENSMUSG00000109909 ENSMUST00000210429 Gm45663 TEC Interval_121747 chr5 6427642 6427818 + 0 NA TTS (ENSMUSG00000106064.1) lincRNA-TTS (ENSMUSG00000106064.1) 1502 ENSMUSG00000104663.1 ENSMUSG00000104663 ENSMUST00000197670 Gm3203 processed_pseudogene Interval_70154 chr17 5853842 5854734 + 0 NA intron (ENSMUSG00000002365.10, intron 1 of 17) protein_coding-intron (ENSMUSG00000002365.10, intron 1 of 17) 12936 ENSMUSG00000002365.10 ENSMUSG00000002365 ENSMUST00000231803 Snx9 protein_coding Interval_106980 chr3 102407507 102407687 + 0 NA intron (ENSMUSG00000105891.4, intron 2 of 4) lincRNA-intron (ENSMUSG00000105891.4, intron 2 of 4) -17590 ENSMUSG00000106459.1 ENSMUSG00000106459 ENSMUST00000197603 Gm43245 processed_pseudogene Interval_86552 chr19 41651936 41652303 + 0 NA intron (ENSMUSG00000025020.11, intron 4 of 11) protein_coding-intron (ENSMUSG00000025020.11, intron 5 of 36) 63468 ENSMUSG00000098286.1 ENSMUSG00000098286 ENSMUST00000183602 Mir8091 miRNA Interval_23648 chr11 24070080 24070306 + 0 NA intron (ENSMUSG00000055010.1, intron 1 of 2) protein_coding-intron (ENSMUSG00000055010.1, intron 1 of 2) 4861 ENSMUSG00000055010.1 ENSMUSG00000055010 ENSMUST00000068360 A830031A19Rik protein_coding Interval_89501 chr2 21187565 21187818 + 0 NA intron (ENSMUSG00000026679.3, intron 4 of 4) protein_coding-intron (ENSMUSG00000026679.3, intron 4 of 4) 10175 ENSMUSG00000089576.1 ENSMUSG00000089576 ENSMUST00000158951 Gm23007 misc_RNA Interval_30091 chr11 89123926 89124919 + 0 NA TTS (ENSMUSG00000086919.1) lincRNA-TTS (ENSMUSG00000086919.1) 2284 ENSMUSG00000086919.1 ENSMUSG00000086919 ENSMUST00000138295 Gm11497 lincRNA Interval_160194 chr8 107065518 107066584 + 0 NA promoter-TSS (ENSMUSG00000031919.6) protein_coding-promoter-TSS (ENSMUSG00000031919.6) -407 ENSMUSG00000031919.6 ENSMUSG00000031919 ENSMUST00000034393 Tmed6 protein_coding Interval_33158 chr11 114820137 114820816 + 0 NA Intergenic Intergenic 21552 ENSMUSG00000034677.9 ENSMUSG00000034677 ENSMUST00000106584 Gpr142 protein_coding Interval_155295 chr8 31031398 31033896 + 0 NA Intergenic Intergenic 28739 ENSMUSG00000109614.1 ENSMUSG00000109614 ENSMUST00000211579 Gm45252 processed_pseudogene Interval_73882 chr17 45212893 45213128 + 0 NA Intergenic Intergenic 3044 ENSMUSG00000096425.1 ENSMUSG00000096425 ENSMUST00000178626 Gm24979 miRNA Interval_2051 chr1 36119073 36119774 + 0 NA Intergenic Intergenic -12619 ENSMUSG00000102202.1 ENSMUSG00000102202 ENSMUST00000193983 Gm33280 lincRNA Interval_58751 chr15 37780383 37780665 + 0 NA intron (ENSMUSG00000051359.15, intron 1 of 2) protein_coding-intron (ENSMUSG00000051359.15, intron 1 of 6) -15123 ENSMUSG00000086313.1 ENSMUSG00000086313 ENSMUST00000156011 Gm15940 sense_intronic Interval_73111 chr17 34883572 34884358 + 0 NA intron (ENSMUSG00000049823.9, intron 1 of 2) protein_coding-intron (ENSMUSG00000024371.14, intron 1 of 13) -1923 ENSMUSG00000092511.7 ENSMUSG00000092511 ENSMUST00000129891 Gm20547 protein_coding Interval_32005 chr11 104403619 104404959 + 0 NA intron (ENSMUSG00000018412.16, intron 2 of 13) protein_coding-intron (ENSMUSG00000018412.16, intron 3 of 14) 21011 ENSMUSG00000106014.1 ENSMUSG00000106014 ENSMUST00000195891 Gm47315 miRNA Interval_162730 chr9 8105624 8105891 + 0 NA exon (ENSMUSG00000040729.8, exon 5 of 12) protein_coding-exon (ENSMUSG00000040729.8, exon 5 of 12) 28537 ENSMUSG00000040729.8 ENSMUSG00000040729 ENSMUST00000214150 Cep126 protein_coding Interval_42395 chr13 12649777 12651295 + 0 NA promoter-TSS (ENSMUSG00000097715.2) transcribed_unprocessed_pseudogene-promoter-TSS (ENSMUSG00000097715.2) -15515 ENSMUSG00000088112.1 ENSMUSG00000088112 ENSMUST00000157487 Gm24065 misc_RNA Interval_69924 chr17 3224214 3224892 + 0 NA intron (ENSMUSG00000116858.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000116858.1, intron 1 of 2) -6718 ENSMUSG00000116858.1 ENSMUSG00000116858 ENSMUST00000232042 Gm49797 lincRNA Interval_115339 chr4 97202682 97203789 + 0 NA Intergenic Intergenic 286215 ENSMUSG00000098261.1 ENSMUSG00000098261 ENSMUST00000184022 Gm27521 snRNA Interval_100471 chr2 169272128 169273227 + 0 NA Intergenic Intergenic 37686 ENSMUSG00000085369.1 ENSMUSG00000085369 ENSMUST00000152494 9430093N23Rik lincRNA Interval_154250 chr8 13797998 13798382 + 0 NA exon (ENSMUSG00000038398.8, exon 9 of 9) protein_coding-exon (ENSMUSG00000038398.8, exon 9 of 9) 12555 ENSMUSG00000038398.8 ENSMUSG00000038398 ENSMUST00000211643 Upf3a protein_coding Interval_92148 chr2 54177667 54178070 + 0 NA Intergenic Intergenic -62701 ENSMUSG00000082096.1 ENSMUSG00000082096 ENSMUST00000121666 Gm13505 processed_pseudogene Interval_72833 chr17 32462096 32462608 + 0 NA intron (ENSMUSG00000061126.5, intron 1 of 2) protein_coding-intron (ENSMUSG00000061126.5, intron 1 of 2) 9629 ENSMUSG00000061126.5 ENSMUSG00000061126 ENSMUST00000235903 Cyp4f39 protein_coding Interval_44344 chr13 43933100 43933525 + 0 NA Intergenic Intergenic -15567 ENSMUSG00000113671.1 ENSMUSG00000113671 ENSMUST00000222566 Gm2233 lincRNA Interval_20065 chr10 112977091 112977262 + 0 NA Intergenic Intergenic 16988 ENSMUSG00000112807.1 ENSMUSG00000112807 ENSMUST00000219465 Gm47519 TEC Interval_99145 chr2 157468193 157468774 + 0 NA exon (ENSMUSG00000027646.15, exon 11 of 14) protein_coding-exon (ENSMUSG00000027646.15, exon 11 of 14) 44367 ENSMUSG00000027646.15 ENSMUSG00000027646 ENSMUST00000109529 Src protein_coding Interval_32330 chr11 107001553 107002557 + 0 NA Intergenic Intergenic 2685 ENSMUSG00000083356.1 ENSMUSG00000083356 ENSMUST00000119530 Gm11708 processed_pseudogene Interval_105726 chr3 88939021 88940431 + 0 NA intron (ENSMUSG00000068921.14, intron 2 of 6) protein_coding-intron (ENSMUSG00000068921.14, intron 2 of 12) 11311 ENSMUSG00000068921.14 ENSMUSG00000068921 ENSMUST00000172790 Dap3 protein_coding Interval_129721 chr5 121950313 121950527 + 0 NA intron (ENSMUSG00000042589.18, intron 1 of 6) protein_coding-intron (ENSMUSG00000042589.18, intron 2 of 22) -74910 ENSMUSG00000105795.1 ENSMUSG00000105795 ENSMUST00000198001 Gm3970 antisense Interval_4949 chr1 82884176 82884639 + 0 NA intron (ENSMUSG00000026159.13, intron 7 of 12) protein_coding-intron (ENSMUSG00000026159.13, intron 8 of 12) -28918 ENSMUSG00000113880.1 ENSMUSG00000113880 ENSMUST00000220768 A030005L19Rik protein_coding Interval_74462 chr17 51161831 51162577 + 0 NA intron (ENSMUSG00000023923.10, intron 1 of 2) protein_coding-intron (ENSMUSG00000023923.10, intron 1 of 21) 17090 ENSMUSG00000023923.10 ENSMUSG00000023923 ENSMUST00000225473 Tbc1d5 protein_coding Interval_84282 chr19 9723837 9724062 + 0 NA Intergenic Intergenic -103168 ENSMUSG00000117756.1 ENSMUSG00000117756 ENSMUST00000235774 Gm50320 processed_pseudogene Interval_99757 chr2 164736423 164737648 + 0 NA intron (ENSMUSG00000076434.9, intron 1 of 3) protein_coding-intron (ENSMUSG00000076434.9, intron 1 of 3) 8896 ENSMUSG00000076434.9 ENSMUSG00000076434 ENSMUST00000130227 Wfdc3 protein_coding Interval_126715 chr5 92235489 92235821 + 0 NA intron (ENSMUSG00000029410.11, intron 12 of 16) protein_coding-intron (ENSMUSG00000029410.11, intron 11 of 15) -6634 ENSMUSG00000029410.11 ENSMUSG00000029410 ENSMUST00000031359 Ppef2 protein_coding Interval_84301 chr19 9933824 9934142 + 0 NA Intergenic Intergenic -3686 ENSMUSG00000118065.1 ENSMUSG00000118065 ENSMUST00000236688 Gm50343 processed_pseudogene Interval_63116 chr15 99162403 99164345 + 0 NA intron (ENSMUSG00000051934.5, intron 2 of 3) protein_coding-intron (ENSMUSG00000051934.5, intron 2 of 3) 11563 ENSMUSG00000087991.1 ENSMUSG00000087991 ENSMUST00000157366 Gm25057 misc_RNA Interval_60203 chr15 67956201 67956394 + 0 NA Intergenic Intergenic -13493 ENSMUSG00000116519.1 ENSMUSG00000116519 ENSMUST00000230045 Gm49409 processed_pseudogene Interval_31863 chr11 103424988 103425602 + 0 NA Intergenic Intergenic 3559 ENSMUSG00000110636.1 ENSMUSG00000110636 ENSMUST00000212331 Gm39397 lincRNA Interval_146671 chr7 49316178 49316995 + 0 NA intron (ENSMUSG00000052512.17, intron 1 of 6) protein_coding-intron (ENSMUSG00000052512.17, intron 1 of 37) -26888 ENSMUSG00000052512.17 ENSMUSG00000052512 ENSMUST00000183715 Nav2 protein_coding Interval_119412 chr4 137527916 137528519 + 0 NA intron (ENSMUSG00000028763.18, intron 5 of 5) protein_coding-intron (ENSMUSG00000028763.18, intron 33 of 96) 5758 ENSMUSG00000028763.18 ENSMUSG00000028763 ENSMUST00000155648 Hspg2 protein_coding Interval_127059 chr5 100008411 100008969 + 0 NA Intergenic Intergenic -29752 ENSMUSG00000000568.15 ENSMUSG00000000568 ENSMUST00000170912 Hnrnpd protein_coding Interval_89261 chr2 18608083 18610121 + 0 NA Intergenic Intergenic 33000 ENSMUSG00000082943.1 ENSMUSG00000082943 ENSMUST00000117996 Gm13355 processed_pseudogene Interval_132424 chr5 144853950 144854423 + 0 NA intron (ENSMUSG00000045482.16, intron 68 of 70) protein_coding-intron (ENSMUSG00000045482.16, intron 67 of 69) 42630 ENSMUSG00000098822.1 ENSMUSG00000098822 ENSMUST00000183852 Mir7039 miRNA Interval_87142 chr19 46420686 46422057 + 0 NA intron (ENSMUSG00000025231.17, intron 1 of 5) protein_coding-intron (ENSMUSG00000025231.17, intron 2 of 11) 20247 ENSMUSG00000025231.17 ENSMUSG00000025231 ENSMUST00000144341 Sufu protein_coding Interval_31481 chr11 100938765 100940173 + 0 NA promoter-TSS (ENSMUSG00000004040.16) protein_coding-promoter-TSS (ENSMUSG00000004040.16) 31082 ENSMUSG00000004044.9 ENSMUSG00000004044 ENSMUST00000132934 Cavin1 protein_coding Interval_42176 chr13 9563057 9563606 + 0 NA intron (ENSMUSG00000048264.16, intron 10 of 36) protein_coding-intron (ENSMUSG00000048264.16, intron 10 of 38) 5470 ENSMUSG00000113905.1 ENSMUSG00000113905 ENSMUST00000221729 Gm48872 TEC Interval_149454 chr7 98696896 98697761 + 0 NA intron (ENSMUSG00000086477.3, intron 1 of 3) transcribed_unitary_pseudogene-intron (ENSMUSG00000086477.3, intron 1 of 3) 5106 ENSMUSG00000086477.3 ENSMUSG00000086477 ENSMUST00000238534 Gm15506 transcribed_unitary_pseudogene Interval_158960 chr8 88256562 88257230 + 0 NA intron (ENSMUSG00000036779.12, intron 4 of 4) protein_coding-intron (ENSMUSG00000036779.12, intron 11 of 11) 4924 ENSMUSG00000036779.12 ENSMUSG00000036779 ENSMUST00000154115 Tent4b protein_coding Interval_75744 chr17 70977663 70977897 + 0 NA intron (ENSMUSG00000117098.1, intron 1 of 3) protein_coding-intron (ENSMUSG00000034868.9, intron 1 of 3) 752 ENSMUSG00000034868.9 ENSMUSG00000034868 ENSMUST00000131820 Myl12b protein_coding Interval_47062 chr13 75010466 75010757 + 0 NA Intergenic Intergenic -100207 ENSMUSG00000021587.5 ENSMUSG00000021587 ENSMUST00000222727 Pcsk1 protein_coding Interval_159571 chr8 95531817 95532858 + 0 NA Intergenic Intergenic -1748 ENSMUSG00000036598.4 ENSMUSG00000036598 ENSMUST00000041569 Ccdc113 protein_coding Interval_46086 chr13 61410771 61411209 + 0 NA Intergenic Intergenic 28880 ENSMUSG00000114802.1 ENSMUSG00000114802 ENSMUST00000225483 Cts7-ps unprocessed_pseudogene Interval_42931 chr13 21468075 21468901 + 0 NA promoter-TSS (ENSMUSG00000059395.4) protein_coding-promoter-TSS (ENSMUSG00000059395.4) 21 ENSMUSG00000059395.4 ENSMUSG00000059395 ENSMUST00000068235 Nkapl protein_coding Interval_103206 chr3 36688912 36690506 + 0 NA intron (ENSMUSG00000027716.13, intron 1 of 1) protein_coding-intron (ENSMUSG00000027716.13, intron 1 of 11) 458 ENSMUSG00000027716.13 ENSMUSG00000027716 ENSMUST00000146475 Trpc3 protein_coding Interval_105666 chr3 88467070 88467616 + 0 NA Intergenic Intergenic -7241 ENSMUSG00000103304.1 ENSMUSG00000103304 ENSMUST00000193850 Gm5979 unprocessed_pseudogene Interval_69395 chr16 92662710 92663875 + 0 NA intron (ENSMUSG00000022952.17, intron 3 of 5) protein_coding-intron (ENSMUSG00000022952.17, intron 5 of 7) 50478 ENSMUSG00000097139.3 ENSMUSG00000097139 ENSMUST00000180989 Gm26626 antisense Interval_161260 chr8 119356474 119356907 + 0 NA Intergenic Intergenic 12174 ENSMUSG00000031839.7 ENSMUSG00000031839 ENSMUST00000212795 Hsbp1 protein_coding Interval_169508 chr9 98624465 98624888 + 0 NA Intergenic Intergenic -23031 ENSMUSG00000032459.9 ENSMUSG00000032459 ENSMUST00000190150 Mrps22 protein_coding Interval_62698 chr15 96342209 96343007 + 0 NA intron (ENSMUSG00000033237.19, intron 3 of 4) protein_coding-intron (ENSMUSG00000033237.19, intron 3 of 20) -36206 ENSMUSG00000033237.19 ENSMUSG00000033237 ENSMUST00000176739 Arid2 protein_coding Interval_164846 chr9 42421418 42421609 + 0 NA intron (ENSMUSG00000037287.15, intron 7 of 7) protein_coding-intron (ENSMUSG00000037287.15, intron 7 of 7) -21339 ENSMUSG00000104589.1 ENSMUSG00000104589 ENSMUST00000196448 Gm44311 miRNA Interval_31007 chr11 97677716 97678670 + 0 NA intron (ENSMUSG00000038437.11, intron 17 of 20) protein_coding-intron (ENSMUSG00000038437.11, intron 16 of 19) 1133 ENSMUSG00000098881.1 ENSMUSG00000098881 ENSMUST00000184494 Mir6927 miRNA Interval_31495 chr11 101009050 101009970 + 0 NA promoter-TSS (ENSMUSG00000019302.16) protein_coding-promoter-TSS (ENSMUSG00000019302.16) 23 ENSMUSG00000019302.16 ENSMUSG00000019302 ENSMUST00000127810 Atp6v0a1 protein_coding Interval_130483 chr5 128250366 128250904 + 0 NA intron (ENSMUSG00000034310.8, intron 2 of 8) protein_coding-intron (ENSMUSG00000034310.8, intron 2 of 8) -9296 ENSMUSG00000104581.1 ENSMUSG00000104581 ENSMUST00000197363 Gm42497 TEC Interval_171584 chr9 119368137 119368571 + 0 NA intron (ENSMUSG00000035769.9, intron 5 of 19) protein_coding-intron (ENSMUSG00000035769.9, intron 6 of 18) -2801 ENSMUSG00000070280.13 ENSMUSG00000070280 ENSMUST00000127794 Slc22a14 protein_coding Interval_137724 chr6 81767725 81768111 + 0 NA Intergenic Intergenic -38873 ENSMUSG00000089445.1 ENSMUSG00000089445 ENSMUST00000158820 Gm22530 snoRNA Interval_102085 chr3 16858694 16859208 + 0 NA Intergenic Intergenic -35639 ENSMUSG00000088644.1 ENSMUSG00000088644 ENSMUST00000158019 Gm26485 snRNA Interval_36061 chr12 34733410 34734207 + 0 NA intron (ENSMUSG00000004698.11, intron 2 of 11) protein_coding-intron (ENSMUSG00000004698.11, intron 3 of 4) -105170 ENSMUSG00000113386.1 ENSMUSG00000113386 ENSMUST00000222121 Gm47357 sense_intronic Interval_153798 chr8 8689501 8690840 + 0 NA promoter-TSS (ENSMUSG00000098917.1) miRNA-promoter-TSS (ENSMUSG00000098917.1) -8 ENSMUSG00000098917.1 ENSMUSG00000098917 ENSMUST00000185082 Mir7654 miRNA Interval_63928 chr16 4613668 4614225 + 0 NA TTS (ENSMUSG00000014303.13) protein_coding-TTS (ENSMUSG00000014303.13) 10960 ENSMUSG00000014301.13 ENSMUSG00000014301 ENSMUST00000229767 Pam16 protein_coding Interval_11199 chr1 180098527 180098736 + 0 NA intron (ENSMUSG00000026490.18, intron 14 of 37) protein_coding-intron (ENSMUSG00000026490.18, intron 13 of 34) 49520 ENSMUSG00000103636.1 ENSMUSG00000103636 ENSMUST00000195719 Gm38331 TEC Interval_155919 chr8 41035555 41036580 + 0 NA intron (ENSMUSG00000045636.16, intron 3 of 4) protein_coding-intron (ENSMUSG00000045636.16, intron 1 of 9) -3689 ENSMUSG00000086773.1 ENSMUSG00000086773 ENSMUST00000148357 Gm16192 antisense Interval_75683 chr17 70643504 70643760 + 0 NA intron (ENSMUSG00000003279.17, intron 2 of 9) protein_coding-intron (ENSMUSG00000003279.17, intron 7 of 14) 111950 ENSMUSG00000097282.1 ENSMUSG00000097282 ENSMUST00000181546 5031415H12Rik antisense Interval_169893 chr9 102782902 102783213 + 0 NA intron (ENSMUSG00000110884.1, intron 2 of 4) lincRNA-intron (ENSMUSG00000110884.1, intron 2 of 4) 11562 ENSMUSG00000110884.1 ENSMUSG00000110884 ENSMUST00000217446 Gm47416 lincRNA Interval_14407 chr10 33071674 33071888 + 0 NA Intergenic Intergenic -8773 ENSMUSG00000019787.9 ENSMUSG00000019787 ENSMUST00000219000 Trdn protein_coding Interval_18760 chr10 90098054 90098238 + 0 NA intron (ENSMUSG00000058589.14, intron 8 of 25) protein_coding-intron (ENSMUSG00000058589.14, intron 8 of 17) 36671 ENSMUSG00000112140.1 ENSMUSG00000112140 ENSMUST00000217774 Gm5780 processed_pseudogene Interval_84882 chr19 18590182 18591486 + 0 NA intron (ENSMUSG00000024725.13, intron 6 of 10) protein_coding-intron (ENSMUSG00000024725.13, intron 5 of 9) 9379 ENSMUSG00000080783.1 ENSMUSG00000080783 ENSMUST00000117398 Gm8250 processed_pseudogene Interval_91492 chr2 39394391 39394764 + 0 NA promoter-TSS (ENSMUSG00000083401.1) unprocessed_pseudogene-promoter-TSS (ENSMUSG00000083401.1) -836 ENSMUSG00000083401.1 ENSMUSG00000083401 ENSMUST00000120391 Gm13506 unprocessed_pseudogene Interval_16392 chr10 62701930 62702396 + 0 NA promoter-TSS (ENSMUSG00000112378.1) processed_pseudogene-promoter-TSS (ENSMUSG00000112378.1) -33 ENSMUSG00000112378.1 ENSMUSG00000112378 ENSMUST00000220207 Gm47261 processed_pseudogene Interval_91396 chr2 38542344 38542992 + 0 NA intron (ENSMUSG00000026749.11, intron 2 of 3) protein_coding-intron (ENSMUSG00000026749.11, intron 1 of 9) -6961 ENSMUSG00000108210.1 ENSMUSG00000108210 ENSMUST00000204769 Gm35808 TEC Interval_109396 chr3 141766074 141767013 + 0 NA intron (ENSMUSG00000059921.15, intron 5 of 17) protein_coding-intron (ENSMUSG00000059921.15, intron 5 of 16) 79990 ENSMUSG00000106071.1 ENSMUSG00000106071 ENSMUST00000199604 Gm43826 TEC Interval_134090 chr6 19258740 19258921 + 0 NA intron (ENSMUSG00000107217.1, intron 4 of 4) lincRNA-intron (ENSMUSG00000107217.1, intron 4 of 4) 20013 ENSMUSG00000107217.1 ENSMUSG00000107217 ENSMUST00000200755 4930524B17Rik lincRNA Interval_135436 chr6 39361478 39361668 + 0 NA intron (ENSMUSG00000029924.12, intron 5 of 7) protein_coding-intron (ENSMUSG00000029924.12, intron 3 of 14) 16084 ENSMUSG00000029924.12 ENSMUSG00000029924 ENSMUST00000202785 Slc37a3 protein_coding Interval_39225 chr12 86026782 86027713 + 0 NA intron (ENSMUSG00000012609.19, intron 6 of 7) protein_coding-intron (ENSMUSG00000012609.19, intron 33 of 33) -41926 ENSMUSG00000103301.1 ENSMUSG00000103301 ENSMUST00000192206 Gm37804 TEC Interval_9382 chr1 156680902 156681134 + 0 NA exon (ENSMUSG00000033557.17, exon 8 of 8) protein_coding-exon (ENSMUSG00000033557.17, exon 8 of 8) 2473 ENSMUSG00000102961.1 ENSMUSG00000102961 ENSMUST00000194858 Gm19918 TEC Interval_34085 chr11 120423363 120424560 + 0 NA intron (ENSMUSG00000039703.15, intron 3 of 15) protein_coding-intron (ENSMUSG00000039703.15, intron 3 of 16) -18710 ENSMUSG00000039691.10 ENSMUSG00000039691 ENSMUST00000143192 Tspan10 protein_coding Interval_149661 chr7 100484548 100484784 + 0 NA intron (ENSMUSG00000032942.14, intron 5 of 5) protein_coding-intron (ENSMUSG00000032942.14, intron 6 of 6) -8688 ENSMUSG00000033685.13 ENSMUSG00000033685 ENSMUST00000149808 Ucp2 protein_coding Interval_83534 chr18 88922696 88923124 + 0 NA intron (ENSMUSG00000056153.15, intron 1 of 2) protein_coding-intron (ENSMUSG00000056153.15, intron 1 of 2) -7669 ENSMUSG00000118089.1 ENSMUSG00000118089 ENSMUST00000236358 Gm50406 processed_pseudogene Interval_107848 chr3 116221638 116222676 + 0 NA Intergenic Intergenic 21749 ENSMUSG00000104607.1 ENSMUSG00000104607 ENSMUST00000198864 Gm31651 lincRNA Interval_170391 chr9 107626542 107627579 + 0 NA promoter-TSS (ENSMUSG00000032562.13) protein_coding-promoter-TSS (ENSMUSG00000032562.13) 5479 ENSMUSG00000102324.1 ENSMUSG00000102324 ENSMUST00000195284 Gm19721 TEC Interval_53438 chr14 57519552 57520395 + 0 NA Intergenic Intergenic -4804 ENSMUSG00000050222.11 ENSMUSG00000050222 ENSMUST00000089494 Il17d protein_coding Interval_157499 chr8 70905517 70906950 + 0 NA promoter-TSS (ENSMUSG00000019261.3) protein_coding-promoter-TSS (ENSMUSG00000019261.3) 240 ENSMUSG00000019261.3 ENSMUSG00000019261 ENSMUST00000212143 Map1s protein_coding Interval_155066 chr8 26099373 26100095 + 0 NA intron (ENSMUSG00000037234.17, intron 2 of 21) protein_coding-intron (ENSMUSG00000037234.17, intron 2 of 21) 17125 ENSMUSG00000085437.8 ENSMUSG00000085437 ENSMUST00000144750 1700047A11Rik antisense Interval_67005 chr16 39302968 39303538 + 0 NA Intergenic Intergenic -114347 ENSMUSG00000116965.1 ENSMUSG00000116965 ENSMUST00000231748 Gm36742 lincRNA Interval_173049 chrX 68511890 68512851 + 0 NA Intergenic Intergenic 9244 ENSMUSG00000082794.1 ENSMUSG00000082794 ENSMUST00000120092 Gm6806 processed_pseudogene Interval_65462 chr16 22469024 22469575 + 0 NA TTS (ENSMUSG00000022861.17) protein_coding-TTS (ENSMUSG00000022861.17) -42181 ENSMUSG00000089874.1 ENSMUSG00000089874 ENSMUST00000159309 9230117E06Rik antisense Interval_158656 chr8 84989443 84991281 + 0 NA promoter-TSS (ENSMUSG00000052566.8) protein_coding-promoter-TSS (ENSMUSG00000052566.8) -280 ENSMUSG00000052566.8 ENSMUSG00000052566 ENSMUST00000209652 Hook2 protein_coding Interval_47336 chr13 81643863 81644731 + 0 NA Intergenic Intergenic -13495 ENSMUSG00000035840.7 ENSMUSG00000035840 ENSMUST00000224420 Lysmd3 protein_coding Interval_13007 chr10 9167217 9167636 + 0 NA Intergenic Intergenic 57325 ENSMUSG00000112543.1 ENSMUSG00000112543 ENSMUST00000218588 Gm48744 TEC Interval_54718 chr14 73558120 73558499 + 0 NA intron (ENSMUSG00000022110.13, intron 1 of 10) protein_coding-intron (ENSMUSG00000022110.13, intron 1 of 11) 5677 ENSMUSG00000022110.13 ENSMUSG00000022110 ENSMUST00000159165 Sucla2 protein_coding Interval_151945 chr7 127693374 127693804 + 0 NA intron (ENSMUSG00000108801.1, intron 1 of 4) protein_coding-intron (ENSMUSG00000030814.17, intron 4 of 4) 1654 ENSMUSG00000108801.1 ENSMUSG00000108801 ENSMUST00000205284 Gm39090 lincRNA Interval_92974 chr2 69071575 69071820 + 0 NA TTS (ENSMUSG00000027035.10) protein_coding-TTS (ENSMUSG00000027035.10) 53601 ENSMUSG00000102662.1 ENSMUSG00000102662 ENSMUST00000193253 Gm38377 TEC Interval_159603 chr8 95755330 95755570 + 0 NA intron (ENSMUSG00000036550.16, intron 18 of 47) protein_coding-intron (ENSMUSG00000036550.16, intron 18 of 47) 1632 ENSMUSG00000105690.1 ENSMUSG00000105690 ENSMUST00000196326 Gm26265 snoRNA Interval_67022 chr16 40738959 40739217 + 0 NA intron (ENSMUSG00000061080.11, intron 1 of 1) protein_coding-intron (ENSMUSG00000061080.11, intron 1 of 8) 327488 ENSMUSG00000099168.1 ENSMUSG00000099168 ENSMUST00000183933 Gm27717 misc_RNA Interval_87712 chr19 55326476 55326684 + 0 NA intron (ENSMUSG00000024983.10, intron 2 of 3) protein_coding-intron (ENSMUSG00000024983.10, intron 2 of 7) 10253 ENSMUSG00000024983.10 ENSMUSG00000024983 ENSMUST00000224396 Vti1a protein_coding Interval_141254 chr6 126563810 126564452 + 0 NA Intergenic Intergenic -7962 ENSMUSG00000110390.1 ENSMUSG00000110390 ENSMUST00000210335 Gm45869 lincRNA Interval_141643 chr6 131721653 131721942 + 0 NA Intergenic Intergenic -31734 ENSMUSG00000063478.2 ENSMUSG00000063478 ENSMUST00000080619 Tas2r114 protein_coding Interval_140280 chr6 116009656 116010938 + 0 NA Intergenic Intergenic 47752 ENSMUSG00000030126.17 ENSMUSG00000030126 ENSMUST00000204574 Tmcc1 protein_coding Interval_50847 chr14 20180657 20182486 + 0 NA exon (ENSMUSG00000023243.9, exon 1 of 5) protein_coding-exon (ENSMUSG00000023243.9, exon 1 of 5) 18383 ENSMUSG00000114523.1 ENSMUSG00000114523 ENSMUST00000225224 Gm48394 processed_pseudogene Interval_84977 chr19 20914924 20916113 + 0 NA intron (ENSMUSG00000024749.9, intron 2 of 20) protein_coding-intron (ENSMUSG00000024749.9, intron 2 of 20) -6874 ENSMUSG00000118293.1 ENSMUSG00000118293 ENSMUST00000238088 Gm32750 antisense Interval_67283 chr16 45408404 45409506 + 0 NA promoter-TSS (ENSMUSG00000022661.14) protein_coding-promoter-TSS (ENSMUSG00000022661.14) 52 ENSMUSG00000022661.14 ENSMUSG00000022661 ENSMUST00000172091 Cd200 protein_coding Interval_85844 chr19 32314897 32315494 + 0 NA intron (ENSMUSG00000040451.18, intron 2 of 2) protein_coding-intron (ENSMUSG00000040451.18, intron 2 of 9) -38231 ENSMUSG00000040451.18 ENSMUSG00000040451 ENSMUST00000141252 Sgms1 protein_coding Interval_23417 chr11 22485174 22485440 + 0 NA intron (ENSMUSG00000085021.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000085021.1, intron 1 of 2) 1699 ENSMUSG00000085021.1 ENSMUSG00000085021 ENSMUST00000147771 Gm12051 lincRNA Interval_26779 chr11 60443739 60444686 + 0 NA exon (ENSMUSG00000018415.14, exon 6 of 6) protein_coding-exon (ENSMUSG00000018415.14, exon 6 of 6) -2531 ENSMUSG00000083412.1 ENSMUSG00000083412 ENSMUST00000118398 Gm12268 processed_pseudogene Interval_56850 chr14 122432275 122432997 + 0 NA Intergenic Intergenic 4259 ENSMUSG00000064052.3 ENSMUSG00000064052 ENSMUST00000238321 Gm5089 processed_transcript Interval_51755 chr14 31986816 31987148 + 0 NA Intergenic Intergenic 26020 ENSMUSG00000115120.1 ENSMUSG00000115120 ENSMUST00000226278 4930425P05Rik lincRNA Interval_95592 chr2 112582496 112582795 + 0 NA intron (ENSMUSG00000003604.14, intron 1 of 4) protein_coding-intron (ENSMUSG00000003604.14, intron 2 of 5) 23363 ENSMUSG00000003604.14 ENSMUSG00000003604 ENSMUST00000099588 Aven protein_coding Interval_18591 chr10 88276642 88277470 + 0 NA Intergenic Intergenic -3825 ENSMUSG00000112259.1 ENSMUSG00000112259 ENSMUST00000217977 Gm17980 processed_pseudogene Interval_102833 chr3 31882538 31882874 + 0 NA Intergenic Intergenic -72058 ENSMUSG00000103539.1 ENSMUSG00000103539 ENSMUST00000194517 Gm37834 TEC Interval_118047 chr4 128603045 128604609 + 0 NA TTS (ENSMUSG00000061894.15) protein_coding-TTS (ENSMUSG00000061894.15) 6207 ENSMUSG00000061894.15 ENSMUSG00000061894 ENSMUST00000141040 Zscan20 protein_coding Interval_111295 chr4 17570872 17571971 + 0 NA Intergenic Intergenic -11402 ENSMUSG00000089218.1 ENSMUSG00000089218 ENSMUST00000158593 Gm23384 snRNA Interval_17369 chr10 76106658 76106983 + 0 NA intron (ENSMUSG00000020226.9, intron 3 of 14) protein_coding-intron (ENSMUSG00000020226.9, intron 3 of 14) 4141 ENSMUSG00000020226.9 ENSMUSG00000020226 ENSMUST00000120757 Slc5a4b protein_coding Interval_73760 chr17 43354679 43355000 + 0 NA Intergenic Intergenic -5612 ENSMUSG00000056492.6 ENSMUSG00000056492 ENSMUST00000225004 Adgrf5 protein_coding Interval_55531 chr14 90973893 90975091 + 0 NA Intergenic Intergenic 133800 ENSMUSG00000088746.1 ENSMUSG00000088746 ENSMUST00000158121 Gm23225 snoRNA Interval_48553 chr13 100112499 100112812 + 0 NA intron (ENSMUSG00000021643.15, intron 2 of 2) protein_coding-intron (ENSMUSG00000021643.15, intron 2 of 2) 4259 ENSMUSG00000021643.15 ENSMUSG00000021643 ENSMUST00000152286 Serf1 protein_coding Interval_91109 chr2 35160320 35160667 + 0 NA intron (ENSMUSG00000057110.15, intron 27 of 42) protein_coding-intron (ENSMUSG00000057110.15, intron 27 of 43) 15397 ENSMUSG00000057110.15 ENSMUSG00000057110 ENSMUST00000143807 Cntrl protein_coding Interval_125745 chr5 73844467 73844677 + 0 NA Intergenic Intergenic -68324 ENSMUSG00000107027.1 ENSMUSG00000107027 ENSMUST00000202487 1700019F05Rik lincRNA Interval_51829 chr14 32534172 32534523 + 0 NA intron (ENSMUSG00000054051.7, intron 5 of 5) protein_coding-intron (ENSMUSG00000054051.7, intron 5 of 20) -18228 ENSMUSG00000054051.7 ENSMUSG00000054051 ENSMUST00000228549 Ercc6 protein_coding Interval_108790 chr3 131289568 131289793 + 0 NA exon (ENSMUSG00000027983.13, exon 5 of 5) protein_coding-exon (ENSMUSG00000027983.13, exon 5 of 5) -4536 ENSMUSG00000106268.1 ENSMUSG00000106268 ENSMUST00000198141 Gm18492 processed_pseudogene Interval_63960 chr16 4861152 4861517 + 0 NA promoter-TSS (ENSMUSG00000022518.16) protein_coding-promoter-TSS (ENSMUSG00000022518.16) -2989 ENSMUSG00000022518.16 ENSMUSG00000022518 ENSMUST00000180939 4930562C15Rik protein_coding Interval_124415 chr5 45737371 45737745 + 0 NA intron (ENSMUSG00000015882.18, intron 5 of 7) protein_coding-intron (ENSMUSG00000015882.18, intron 5 of 6) 24132 ENSMUSG00000104852.1 ENSMUSG00000104852 ENSMUST00000195925 Gm43201 TEC Interval_14422 chr10 33419365 33419750 + 0 NA intron (ENSMUSG00000019787.9, intron 23 of 37) protein_coding-intron (ENSMUSG00000019787.9, intron 23 of 37) 7481 ENSMUSG00000112521.1 ENSMUSG00000112521 ENSMUST00000218403 Gm29884 processed_pseudogene Interval_71796 chr17 26149605 26150174 + 0 NA intron (ENSMUSG00000024182.16, intron 1 of 2) protein_coding-intron (ENSMUSG00000024182.16, intron 2 of 10) 9115 ENSMUSG00000117374.1 ENSMUSG00000117374 ENSMUST00000233991 Gm49983 processed_pseudogene Interval_30138 chr11 89623636 89625143 + 0 NA intron (ENSMUSG00000047773.15, intron 4 of 21) protein_coding-intron (ENSMUSG00000047773.15, intron 2 of 16) 216877 ENSMUSG00000047773.15 ENSMUSG00000047773 ENSMUST00000207171 Ankfn1 protein_coding Interval_12188 chr1 190707926 190708232 + 0 NA intron (ENSMUSG00000089872.10, intron 11 of 12) protein_coding-intron (ENSMUSG00000089872.10, intron 11 of 12) 113753 ENSMUSG00000103963.1 ENSMUSG00000103963 ENSMUST00000191893 Gm30932 lincRNA Interval_101545 chr3 4870415 4870649 + 0 NA Intergenic Intergenic 20699 ENSMUSG00000104141.1 ENSMUSG00000104141 ENSMUST00000192494 Gm6140 processed_pseudogene Interval_71300 chr17 22023397 22023586 + 0 NA intron (ENSMUSG00000053347.15, intron 5 of 5) protein_coding-intron (ENSMUSG00000053347.15, intron 5 of 5) -15892 ENSMUSG00000040775.6 ENSMUSG00000040775 ENSMUST00000075018 Gm9772 processed_pseudogene Interval_96538 chr2 125493881 125494531 + 0 NA intron (ENSMUSG00000027204.13, intron 1 of 9) protein_coding-intron (ENSMUSG00000027204.13, intron 2 of 65) -10883 ENSMUSG00000053615.1 ENSMUSG00000053615 ENSMUST00000066157 Gm9913 antisense Interval_119701 chr4 139322903 139323303 + 0 NA Intergenic Intergenic 6521 ENSMUSG00000028743.7 ENSMUSG00000028743 ENSMUST00000153645 Akr7a5 protein_coding Interval_38212 chr12 76389254 76389530 + 0 NA exon (ENSMUSG00000033454.6, exon 2 of 2) protein_coding-exon (ENSMUSG00000033454.6, exon 2 of 2) 14590 ENSMUSG00000097323.2 ENSMUSG00000097323 ENSMUST00000180709 4930426I24Rik lincRNA Interval_51600 chr14 30600861 30601094 + 0 NA promoter-TSS (ENSMUSG00000021948.17) protein_coding-promoter-TSS (ENSMUSG00000021948.17) 8318 ENSMUSG00000021948.17 ENSMUSG00000021948 ENSMUST00000227078 Prkcd protein_coding Interval_113999 chr4 62367848 62368155 + 0 NA intron (ENSMUSG00000066150.12, intron 1 of 4) protein_coding-intron (ENSMUSG00000066150.12, intron 1 of 4) -17500 ENSMUSG00000066150.12 ENSMUSG00000066150 ENSMUST00000122092 Slc31a1 protein_coding Interval_152860 chr7 138866741 138867146 + 0 NA intron (ENSMUSG00000041769.13, intron 2 of 3) protein_coding-intron (ENSMUSG00000041769.13, intron 2 of 8) 6106 ENSMUSG00000041769.13 ENSMUSG00000041769 ENSMUST00000172764 Ppp2r2d protein_coding Interval_20615 chr10 119519420 119519635 + 0 NA intron (ENSMUSG00000034813.18, intron 1 of 21) protein_coding-intron (ENSMUSG00000034813.18, intron 1 of 22) -4311 ENSMUSG00000112243.1 ENSMUSG00000112243 ENSMUST00000220254 Gm47342 TEC Interval_155838 chr8 40056134 40056725 + 0 NA Intergenic Intergenic 39715 ENSMUSG00000109815.1 ENSMUSG00000109815 ENSMUST00000209880 Gm7082 processed_pseudogene Interval_62077 chr15 86239420 86240521 + 0 NA intron (ENSMUSG00000051864.10, intron 4 of 12) protein_coding-intron (ENSMUSG00000051864.10, intron 4 of 12) 4465 ENSMUSG00000051864.10 ENSMUSG00000051864 ENSMUST00000229242 Tbc1d22a protein_coding Interval_165497 chr9 48693157 48694120 + 0 NA intron (ENSMUSG00000066687.5, intron 4 of 6) protein_coding-intron (ENSMUSG00000066687.5, intron 4 of 6) -96263 ENSMUSG00000032271.13 ENSMUSG00000032271 ENSMUST00000128076 Nnmt protein_coding Interval_151891 chr7 127371960 127372170 + 0 NA TTS (ENSMUSG00000054381.5) protein_coding-TTS (ENSMUSG00000054381.5) 3951 ENSMUSG00000054381.5 ENSMUSG00000054381 ENSMUST00000206942 Zfp747 protein_coding Interval_5868 chr1 92823277 92823483 + 0 NA intron (ENSMUSG00000100781.1, intron 1 of 1) antisense-intron (ENSMUSG00000100781.1, intron 1 of 1) -8589 ENSMUSG00000034220.7 ENSMUSG00000034220 ENSMUST00000190215 Gpc1 protein_coding Interval_47464 chr13 84783219 84783826 + 0 NA Intergenic Intergenic -92581 ENSMUSG00000098081.1 ENSMUSG00000098081 ENSMUST00000182391 Gm26913 processed_pseudogene Interval_111638 chr4 25025353 25025682 + 0 NA intron (ENSMUSG00000085885.1, intron 1 of 4) processed_transcript-intron (ENSMUSG00000085885.1, intron 1 of 4) -58068 ENSMUSG00000046219.9 ENSMUSG00000046219 ENSMUST00000139588 C230012O17Rik processed_transcript Interval_126241 chr5 83822765 83823233 + 0 NA Intergenic Intergenic -40164 ENSMUSG00000106576.1 ENSMUSG00000106576 ENSMUST00000197408 Gm4866 unprocessed_pseudogene Interval_129719 chr5 121945925 121946227 + 0 NA intron (ENSMUSG00000042589.18, intron 1 of 6) protein_coding-intron (ENSMUSG00000042589.18, intron 2 of 22) -79254 ENSMUSG00000105795.1 ENSMUSG00000105795 ENSMUST00000198001 Gm3970 antisense Interval_170282 chr9 106661196 106662283 + 0 NA TTS (ENSMUSG00000040813.16) protein_coding-TTS (ENSMUSG00000040813.16) -15126 ENSMUSG00000023192.12 ENSMUSG00000023192 ENSMUST00000201955 Grm2 protein_coding Interval_34011 chr11 119997203 119999272 + 0 NA intron (ENSMUSG00000025372.16, intron 1 of 4) protein_coding-intron (ENSMUSG00000025372.16, intron 10 of 13) -16530 ENSMUSG00000105524.1 ENSMUSG00000105524 ENSMUST00000198674 Mir3065 miRNA Interval_95676 chr2 114012946 114014245 + 0 NA promoter-TSS (ENSMUSG00000068615.4) protein_coding-promoter-TSS (ENSMUSG00000068615.4) 24 ENSMUSG00000068615.4 ENSMUSG00000068615 ENSMUST00000090275 Gjd2 protein_coding Interval_89507 chr2 21280512 21281258 + 0 NA Intergenic Intergenic 36780 ENSMUSG00000084071.1 ENSMUSG00000084071 ENSMUST00000117483 Gm13378 processed_pseudogene Interval_121702 chr5 5492479 5492909 + 0 NA intron (ENSMUSG00000046798.14, intron 3 of 3) protein_coding-intron (ENSMUSG00000046798.14, intron 3 of 3) -13614 ENSMUSG00000079666.8 ENSMUSG00000079666 ENSMUST00000156282 1700015F17Rik protein_coding Interval_63249 chr15 99929192 99929494 + 0 NA intron (ENSMUSG00000045350.15, intron 6 of 7) protein_coding-intron (ENSMUSG00000045350.15, intron 2 of 3) -2368 ENSMUSG00000096111.7 ENSMUSG00000096111 ENSMUST00000177831 Gm21917 antisense Interval_91038 chr2 34619325 34619876 + 0 NA promoter-TSS (ENSMUSG00000038696.14) protein_coding-promoter-TSS (ENSMUSG00000038696.14) 30640 ENSMUSG00000087635.3 ENSMUSG00000087635 ENSMUST00000117516 Gm13414 processed_pseudogene Interval_22300 chr11 8604966 8605840 + 0 NA intron (ENSMUSG00000020422.14, intron 2 of 30) protein_coding-intron (ENSMUSG00000020422.14, intron 2 of 30) 59278 ENSMUSG00000020422.14 ENSMUSG00000020422 ENSMUST00000134823 Tns3 protein_coding Interval_104867 chr3 76604754 76605103 + 0 NA intron (ENSMUSG00000034098.14, intron 1 of 5) protein_coding-intron (ENSMUSG00000034098.14, intron 10 of 15) 18048 ENSMUSG00000034098.14 ENSMUSG00000034098 ENSMUST00000162471 Fstl5 protein_coding Interval_165839 chr9 53691875 53692770 + 0 NA intron (ENSMUSG00000055069.3, intron 1 of 1) protein_coding-intron (ENSMUSG00000055069.3, intron 1 of 1) -2039 ENSMUSG00000082465.1 ENSMUSG00000082465 ENSMUST00000118010 Rps6-ps3 processed_pseudogene Interval_109271 chr3 138525985 138528266 + 0 NA promoter-TSS (ENSMUSG00000028156.12) protein_coding-promoter-TSS (ENSMUSG00000028156.12) -160 ENSMUSG00000028156.12 ENSMUSG00000028156 ENSMUST00000198252 Eif4e protein_coding Interval_132309 chr5 144084212 144085199 + 0 NA Intergenic Intergenic -15515 ENSMUSG00000105150.1 ENSMUSG00000105150 ENSMUST00000197465 Gm43615 processed_pseudogene Interval_101791 chr3 9573721 9575300 + 0 NA intron (ENSMUSG00000040209.12, intron 1 of 8) protein_coding-intron (ENSMUSG00000040209.12, intron 1 of 8) -9211 ENSMUSG00000040209.12 ENSMUSG00000040209 ENSMUST00000192832 Zfp704 protein_coding Interval_21844 chr11 4703898 4705763 + 0 NA promoter-TSS (ENSMUSG00000059534.8) protein_coding-promoter-TSS (ENSMUSG00000059534.8) 122 ENSMUSG00000009076.10 ENSMUSG00000009076 ENSMUST00000141970 Zmat5 protein_coding Interval_67656 chr16 55581440 55581644 + 0 NA Intergenic Intergenic 13346 ENSMUSG00000094020.1 ENSMUSG00000094020 ENSMUST00000179948 Gm23003 snRNA Interval_34954 chr12 15377384 15379105 + 0 NA Intergenic Intergenic -77199 ENSMUSG00000113734.1 ENSMUSG00000113734 ENSMUST00000220591 Gm48539 lincRNA Interval_23366 chr11 21934546 21934736 + 0 NA Intergenic Intergenic -18499 ENSMUSG00000082874.4 ENSMUSG00000082874 ENSMUST00000120694 Rpl15-ps1 processed_pseudogene Interval_138479 chr6 88545406 88545753 + 0 NA exon (ENSMUSG00000033182.12, exon 6 of 6) protein_coding-exon (ENSMUSG00000033182.12, exon 6 of 6) 26566 ENSMUSG00000107698.1 ENSMUSG00000107698 ENSMUST00000203376 Gm44430 TEC Interval_98346 chr2 151669908 151671147 + 0 NA Intergenic Intergenic -1994 ENSMUSG00000074704.9 ENSMUSG00000074704 ENSMUST00000096439 Rad21l protein_coding Interval_5127 chr1 85862417 85862685 + 0 NA Intergenic Intergenic 19471 ENSMUSG00000036707.16 ENSMUSG00000036707 ENSMUST00000187623 Cab39 protein_coding Interval_93784 chr2 76868273 76868543 + 0 NA promoter-TSS (ENSMUSG00000051747.15) protein_coding-promoter-TSS (ENSMUSG00000051747.15) -31594 ENSMUSG00000051747.15 ENSMUSG00000051747 ENSMUST00000147048 Ttn protein_coding Interval_125114 chr5 64609995 64611396 + 0 NA promoter-TSS (ENSMUSG00000105402.4) lincRNA-promoter-TSS (ENSMUSG00000105402.4) 5 ENSMUSG00000105402.4 ENSMUSG00000105402 ENSMUST00000196283 Gm3716 lincRNA Interval_117024 chr4 119071402 119073519 + 0 NA Intergenic Intergenic -3349 ENSMUSG00000066060.5 ENSMUSG00000066060 ENSMUST00000128998 Gm12866 lincRNA Interval_108659 chr3 129862723 129864121 + 0 NA intron (ENSMUSG00000058952.12, intron 8 of 13) protein_coding-intron (ENSMUSG00000058952.12, intron 8 of 13) -15392 ENSMUSG00000027999.15 ENSMUSG00000027999 ENSMUST00000196736 Pla2g12a protein_coding Interval_119794 chr4 140029979 140031195 + 0 NA intron (ENSMUSG00000040972.8, intron 6 of 9) protein_coding-intron (ENSMUSG00000040972.8, intron 6 of 9) -62561 ENSMUSG00000078234.6 ENSMUSG00000078234 ENSMUST00000105031 Klhdc7a protein_coding Interval_92488 chr2 60075787 60076267 + 0 NA TTS (ENSMUSG00000026987.16) protein_coding-TTS (ENSMUSG00000026987.16) 22687 ENSMUSG00000087181.3 ENSMUSG00000087181 ENSMUST00000140763 Gm13570 processed_pseudogene Interval_121315 chr4 154935652 154935894 + 0 NA Intergenic Intergenic -7696 ENSMUSG00000042333.16 ENSMUSG00000042333 ENSMUST00000145296 Tnfrsf14 protein_coding Interval_170376 chr9 107550929 107551776 + 0 NA promoter-TSS (ENSMUSG00000010067.13) protein_coding-promoter-TSS (ENSMUSG00000010067.13) -584 ENSMUSG00000102300.1 ENSMUSG00000102300 ENSMUST00000193782 Gm34106 antisense Interval_156059 chr8 43265215 43265484 + 0 NA Intergenic Intergenic 41587 ENSMUSG00000051176.6 ENSMUSG00000051176 ENSMUST00000082120 Zfp42 protein_coding Interval_166768 chr9 62510540 62511355 + 0 NA promoter-TSS (ENSMUSG00000041729.15) protein_coding-promoter-TSS (ENSMUSG00000041729.15) -4082 ENSMUSG00000084540.1 ENSMUSG00000084540 ENSMUST00000122591 n-R5s84 rRNA Interval_35641 chr12 26488140 26488766 + 0 NA Intergenic Intergenic -1662 ENSMUSG00000113059.1 ENSMUSG00000113059 ENSMUST00000220530 Gm46344 processed_pseudogene Interval_144307 chr7 24410509 24411378 + 0 NA intron (ENSMUSG00000002210.11, intron 6 of 13) protein_coding-intron (ENSMUSG00000002210.11, intron 6 of 13) -3790 ENSMUSG00000002210.11 ENSMUSG00000002210 ENSMUST00000146686 Smg9 protein_coding Interval_92498 chr2 60132593 60132787 + 0 NA intron (ENSMUSG00000026987.16, intron 2 of 3) protein_coding-intron (ENSMUSG00000026987.16, intron 2 of 3) -1365 ENSMUSG00000082330.1 ENSMUSG00000082330 ENSMUST00000119390 Ldha-ps processed_pseudogene Interval_169618 chr9 99474585 99475772 + 0 NA TTS (ENSMUSG00000046242.8) protein_coding-TTS (ENSMUSG00000046242.8) 23703 ENSMUSG00000046242.8 ENSMUSG00000046242 ENSMUST00000056103 Nme9 protein_coding Interval_84872 chr19 18456679 18457775 + 0 NA Intergenic Intergenic -22849 ENSMUSG00000118192.1 ENSMUSG00000118192 ENSMUST00000237767 Gm50183 processed_pseudogene Interval_146186 chr7 44586733 44587174 + 0 NA TTS (ENSMUSG00000002204.9) protein_coding-TTS (ENSMUSG00000002204.9) 3671 ENSMUSG00000109491.1 ENSMUSG00000109491 ENSMUST00000209101 Gm15396 antisense Interval_148522 chr7 82081894 82082112 + 0 NA TTS (ENSMUSG00000109145.1) lincRNA-TTS (ENSMUSG00000109145.1) 11616 ENSMUSG00000109145.1 ENSMUSG00000109145 ENSMUST00000208972 Gm20744 lincRNA Interval_88207 chr19 60666869 60667242 + 0 NA Intergenic Intergenic 55768 ENSMUSG00000117790.1 ENSMUSG00000117790 ENSMUST00000236155 Gm46652 lincRNA Interval_125581 chr5 72182739 72183163 + 0 NA Intergenic Intergenic -10663 ENSMUSG00000105016.1 ENSMUSG00000105016 ENSMUST00000200539 Gm42569 processed_pseudogene Interval_113321 chr4 53453145 53454490 + 0 NA intron (ENSMUSG00000028412.17, intron 1 of 3) protein_coding-intron (ENSMUSG00000028412.17, intron 1 of 15) 13146 ENSMUSG00000028412.17 ENSMUSG00000028412 ENSMUST00000133582 Slc44a1 protein_coding Interval_75504 chr17 67572964 67573202 + 0 NA intron (ENSMUSG00000117029.1, intron 2 of 2) lincRNA-intron (ENSMUSG00000117029.1, intron 2 of 2) 21476 ENSMUSG00000087829.1 ENSMUSG00000087829 ENSMUST00000157204 Gm22277 misc_RNA Interval_70040 chr17 4921015 4921727 + 0 NA Intergenic Intergenic 25443 ENSMUSG00000116551.1 ENSMUSG00000116551 ENSMUST00000232522 Gm41517 lincRNA Interval_6936 chr1 121053659 121054365 + 0 NA Intergenic Intergenic -33459 ENSMUSG00000097881.7 ENSMUSG00000097881 ENSMUST00000181183 Celrr lincRNA Interval_41784 chr12 119106953 119107222 + 0 NA Intergenic Intergenic -39657 ENSMUSG00000114030.1 ENSMUSG00000114030 ENSMUST00000221798 Gm18921 processed_pseudogene Interval_127618 chr5 105829043 105829607 + 0 NA exon (ENSMUSG00000046079.16, exon 3 of 6) protein_coding-exon (ENSMUSG00000046079.16, exon 3 of 6) -10337 ENSMUSG00000084878.1 ENSMUSG00000084878 ENSMUST00000135958 Lrrc8dos antisense Interval_53265 chr14 55688204 55688444 + 0 NA intron (ENSMUSG00000115154.1, intron 2 of 2) antisense-intron (ENSMUSG00000115154.1, intron 2 of 2) -4407 ENSMUSG00000088402.1 ENSMUSG00000088402 ENSMUST00000157777 Gm25887 snRNA Interval_88102 chr19 59148792 59149163 + 0 NA Intergenic Intergenic 18003 ENSMUSG00000006270.7 ENSMUSG00000006270 ENSMUST00000173710 Vax1 protein_coding Interval_17698 chr10 79613555 79614641 + 0 NA promoter-TSS (ENSMUSG00000045912.9) protein_coding-promoter-TSS (ENSMUSG00000045912.9) -73 ENSMUSG00000045912.9 ENSMUSG00000045912 ENSMUST00000178228 C2cd4c protein_coding Interval_105421 chr3 86129911 86130215 + 0 NA TTS (ENSMUSG00000028082.14) protein_coding-TTS (ENSMUSG00000028082.14) 8795 ENSMUSG00000064984.1 ENSMUSG00000064984 ENSMUST00000083050 Snord73a snoRNA Interval_24133 chr11 30654680 30654866 + 0 NA Intergenic Intergenic -5186 ENSMUSG00000060923.5 ENSMUSG00000060923 ENSMUST00000074613 Acyp2 protein_coding Interval_118176 chr4 129363201 129364616 + 0 NA intron (ENSMUSG00000028807.2, intron 2 of 4) protein_coding-intron (ENSMUSG00000028807.2, intron 2 of 4) 14208 ENSMUSG00000028807.2 ENSMUSG00000028807 ENSMUST00000030610 Zbtb8a protein_coding Interval_10359 chr1 169947754 169948471 + 0 NA Intergenic Intergenic -13864 ENSMUSG00000089990.1 ENSMUSG00000089990 ENSMUST00000159701 Gm15852 processed_transcript Interval_153586 chr8 3537660 3537953 + 0 NA promoter-TSS (ENSMUSG00000004565.15) protein_coding-promoter-TSS (ENSMUSG00000004565.15) 1020 ENSMUSG00000004565.15 ENSMUSG00000004565 ENSMUST00000208691 Pnpla6 protein_coding Interval_163946 chr9 29477109 29477407 + 0 NA intron (ENSMUSG00000059974.10, intron 1 of 2) protein_coding-intron (ENSMUSG00000059974.10, intron 1 of 7) 115252 ENSMUSG00000085638.1 ENSMUSG00000085638 ENSMUST00000141752 Gm15521 sense_intronic Interval_108426 chr3 127040428 127040633 + 0 NA intron (ENSMUSG00000032826.19, intron 9 of 10) protein_coding-intron (ENSMUSG00000032826.19, intron 10 of 14) 11516 ENSMUSG00000105322.1 ENSMUSG00000105322 ENSMUST00000200275 Gm43751 TEC Interval_112102 chr4 34693634 34693872 + 0 NA intron (ENSMUSG00000028294.15, intron 4 of 5) protein_coding-intron (ENSMUSG00000028294.15, intron 11 of 12) -6357 ENSMUSG00000028293.14 ENSMUSG00000028293 ENSMUST00000154020 Slc35a1 protein_coding Interval_7125 chr1 126737779 126738430 + 0 NA promoter-TSS (ENSMUSG00000049690.15) protein_coding-promoter-TSS (ENSMUSG00000049690.15) 138511 ENSMUSG00000101600.1 ENSMUSG00000101600 ENSMUST00000188266 4930599A14Rik lincRNA Interval_68296 chr16 72699250 72701048 + 0 NA intron (ENSMUSG00000022883.11, intron 1 of 1) protein_coding-intron (ENSMUSG00000022883.11, intron 1 of 28) -276200 ENSMUSG00000022883.11 ENSMUSG00000022883 ENSMUST00000232432 Robo1 protein_coding Interval_108918 chr3 133346124 133346551 + 0 NA intron (ENSMUSG00000028013.16, intron 1 of 6) protein_coding-intron (ENSMUSG00000028013.16, intron 6 of 11) 24869 ENSMUSG00000028013.16 ENSMUSG00000028013 ENSMUST00000196807 Ppa2 protein_coding Interval_58977 chr15 41229471 41229871 + 0 NA Intergenic Intergenic 13487 ENSMUSG00000116178.1 ENSMUSG00000116178 ENSMUST00000229823 Gm49529 processed_pseudogene Interval_4665 chr1 75844963 75846445 + 0 NA Intergenic Intergenic 173052 ENSMUSG00000099996.1 ENSMUSG00000099996 ENSMUST00000188786 Gm29065 lincRNA Interval_173081 chrX 70902482 70903237 + 0 NA Intergenic Intergenic -75422 ENSMUSG00000080938.1 ENSMUSG00000080938 ENSMUST00000120462 Gm6062 processed_pseudogene Interval_20409 chr10 117393460 117393836 + 0 NA intron (ENSMUSG00000112728.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000112728.1, intron 1 of 1) 3626 ENSMUSG00000112728.1 ENSMUSG00000112728 ENSMUST00000219525 Gm48903 lincRNA Interval_98968 chr2 156395466 156395946 + 0 NA Intergenic Intergenic -2727 ENSMUSG00000102869.2 ENSMUSG00000102869 ENSMUST00000192590 2900097C17Rik lincRNA Interval_165261 chr9 45840302 45841662 + 0 NA intron (ENSMUSG00000032086.12, intron 1 of 2) protein_coding-intron (ENSMUSG00000032086.12, intron 1 of 8) -4047 ENSMUSG00000098194.1 ENSMUSG00000098194 ENSMUST00000182691 Gm7286 processed_pseudogene Interval_108624 chr3 129622008 129622696 + 0 NA intron (ENSMUSG00000041220.10, intron 3 of 3) protein_coding-intron (ENSMUSG00000041220.10, intron 3 of 4) 61889 ENSMUSG00000092701.1 ENSMUSG00000092701 ENSMUST00000174960 Gm24515 miRNA Interval_88311 chr2 3573341 3573593 + 0 NA intron (ENSMUSG00000026655.15, intron 1 of 4) protein_coding-intron (ENSMUSG00000026655.15, intron 1 of 4) 2979 ENSMUSG00000026655.15 ENSMUSG00000026655 ENSMUST00000176254 Fam107b protein_coding Interval_106063 chr3 92147595 92148070 + 0 NA Intergenic Intergenic -5088 ENSMUSG00000027927.5 ENSMUSG00000027927 ENSMUST00000029535 Lelp1 protein_coding Interval_32004 chr11 104399046 104399595 + 0 NA intron (ENSMUSG00000018412.16, intron 2 of 13) protein_coding-intron (ENSMUSG00000018412.16, intron 3 of 14) 25980 ENSMUSG00000106014.1 ENSMUSG00000106014 ENSMUST00000195891 Gm47315 miRNA Interval_27238 chr11 64618502 64619208 + 0 NA Intergenic Intergenic -28215 ENSMUSG00000080430.1 ENSMUSG00000080430 ENSMUST00000116780 Gm24275 miRNA Interval_120158 chr4 143112763 143113579 + 0 NA intron (ENSMUSG00000057637.13, intron 8 of 9) protein_coding-intron (ENSMUSG00000057637.13, intron 8 of 9) 22991 ENSMUSG00000106597.1 ENSMUSG00000106597 ENSMUST00000197026 Mir7021 miRNA Interval_3539 chr1 59447699 59449492 + 0 NA exon (ENSMUSG00000104502.1, exon 1 of 1) TEC-exon (ENSMUSG00000104502.1, exon 1 of 1) 907 ENSMUSG00000104502.1 ENSMUSG00000104502 ENSMUST00000195013 Gm37737 TEC Interval_15185 chr10 43211639 43212113 + 0 NA Intergenic Intergenic -9860 ENSMUSG00000038240.13 ENSMUSG00000038240 ENSMUST00000162008 Pdss2 protein_coding Interval_84881 chr19 18588359 18589661 + 0 NA intron (ENSMUSG00000024725.13, intron 8 of 10) protein_coding-intron (ENSMUSG00000024725.13, intron 7 of 9) 7555 ENSMUSG00000080783.1 ENSMUSG00000080783 ENSMUST00000117398 Gm8250 processed_pseudogene Interval_14204 chr10 28811432 28811946 + 0 NA intron (ENSMUSG00000049109.15, intron 5 of 5) protein_coding-intron (ENSMUSG00000049109.15, intron 4 of 5) -4933 ENSMUSG00000112111.1 ENSMUSG00000112111 ENSMUST00000218178 Gm47834 processed_pseudogene Interval_64339 chr16 10621307 10621547 + 0 NA intron (ENSMUSG00000068663.14, intron 12 of 22) protein_coding-intron (ENSMUSG00000068663.14, intron 12 of 20) 62112 ENSMUSG00000087384.1 ENSMUSG00000087384 ENSMUST00000126849 Gm15558 antisense Interval_148612 chr7 83289218 83289420 + 0 NA Intergenic Intergenic 54778 ENSMUSG00000109335.1 ENSMUSG00000109335 ENSMUST00000208773 Gm44845 processed_pseudogene Interval_26500 chr11 58179515 58181214 + 0 NA TTS (ENSMUSG00000020514.8) protein_coding-TTS (ENSMUSG00000020514.8) -7375 ENSMUSG00000082292.3 ENSMUSG00000082292 ENSMUST00000119467 Gm12250 processed_pseudogene Interval_121841 chr5 8752901 8753439 + 0 NA Intergenic Intergenic -17402 ENSMUSG00000104535.1 ENSMUSG00000104535 ENSMUST00000199172 Gm42686 TEC Interval_133398 chr6 4660566 4660819 + 0 NA Intergenic Intergenic 29565 ENSMUSG00000015189.12 ENSMUSG00000015189 ENSMUST00000204372 Casd1 protein_coding Interval_97261 chr2 132710216 132710487 + 0 NA intron (ENSMUSG00000044991.10, intron 1 of 1) protein_coding-intron (ENSMUSG00000044991.10, intron 2 of 2) -6755 ENSMUSG00000064413.1 ENSMUSG00000064413 ENSMUST00000082479 Gm22245 snRNA Interval_150675 chr7 113249697 113252736 + 0 NA intron (ENSMUSG00000055116.8, intron 3 of 20) protein_coding-intron (ENSMUSG00000055116.8, intron 2 of 19) 16593 ENSMUSG00000055116.8 ENSMUSG00000055116 ENSMUST00000211547 Arntl protein_coding Interval_139326 chr6 98928515 98928696 + 0 NA TTS (ENSMUSG00000030067.17) protein_coding-TTS (ENSMUSG00000030067.17) -67790 ENSMUSG00000107514.1 ENSMUSG00000107514 ENSMUST00000203192 Gm32381 processed_pseudogene Interval_107687 chr3 110847254 110847537 + 0 NA Intergenic Intergenic 213072 ENSMUSG00000106650.1 ENSMUSG00000106650 ENSMUST00000200424 Gm43404 TEC Interval_9652 chr1 160743055 160743462 + 0 NA intron (ENSMUSG00000026721.16, intron 1 of 3) protein_coding-intron (ENSMUSG00000026721.16, intron 1 of 20) -12429 ENSMUSG00000104053.1 ENSMUSG00000104053 ENSMUST00000195297 Gm38126 TEC Interval_7089 chr1 125652405 125653651 + 0 NA Intergenic Intergenic 15588 ENSMUSG00000101015.1 ENSMUSG00000101015 ENSMUST00000191239 Gm18444 processed_pseudogene Interval_94067 chr2 83625376 83626042 + 0 NA Intergenic Intergenic -30911 ENSMUSG00000027091.14 ENSMUSG00000027091 ENSMUST00000134789 Zc3h15 protein_coding Interval_21612 chr11 3240861 3241662 + 0 NA TTS (ENSMUSG00000020454.17) protein_coding-TTS (ENSMUSG00000020454.17) 25131 ENSMUSG00000020457.13 ENSMUSG00000020457 ENSMUST00000132159 Drg1 protein_coding Interval_65272 chr16 21165795 21166494 + 0 NA Intergenic Intergenic -12144 ENSMUSG00000090356.2 ENSMUSG00000090356 ENSMUST00000170665 Teddm3 protein_coding Interval_17186 chr10 74515080 74515635 + 0 NA intron (ENSMUSG00000052613.16, intron 24 of 34) protein_coding-intron (ENSMUSG00000052613.16, intron 23 of 30) -305365 ENSMUSG00000112686.1 ENSMUSG00000112686 ENSMUST00000218638 Gm7034 processed_pseudogene Interval_40694 chr12 107463575 107463830 + 0 NA exon (ENSMUSG00000113415.1, exon 2 of 2) lincRNA-exon (ENSMUSG00000113415.1, exon 2 of 2) 20426 ENSMUSG00000113415.1 ENSMUSG00000113415 ENSMUST00000222644 Gm3234 lincRNA Interval_111906 chr4 32439112 32440657 + 0 NA intron (ENSMUSG00000040270.16, intron 1 of 4) protein_coding-intron (ENSMUSG00000040270.16, intron 3 of 7) 22449 ENSMUSG00000040270.16 ENSMUSG00000040270 ENSMUST00000125263 Bach2 protein_coding Interval_82013 chr18 67181041 67181370 + 0 NA intron (ENSMUSG00000024524.17, intron 4 of 5) protein_coding-intron (ENSMUSG00000024524.17, intron 4 of 11) -6214 ENSMUSG00000095972.1 ENSMUSG00000095972 ENSMUST00000180237 Gm23512 snRNA Interval_164965 chr9 43465064 43465953 + 0 NA Intergenic Intergenic -3914 ENSMUSG00000100836.1 ENSMUSG00000100836 ENSMUST00000186146 Gm28215 lincRNA Interval_54465 chr14 69989328 69990612 + 0 NA intron (ENSMUSG00000022085.4, intron 4 of 6) protein_coding-intron (ENSMUSG00000022085.4, intron 4 of 6) 67397 ENSMUSG00000114446.1 ENSMUSG00000114446 ENSMUST00000224990 Gm33524 antisense Interval_94719 chr2 93671556 93672265 + 0 NA intron (ENSMUSG00000040310.12, intron 2 of 2) protein_coding-intron (ENSMUSG00000040310.12, intron 2 of 3) 29522 ENSMUSG00000040310.12 ENSMUSG00000040310 ENSMUST00000111254 Alx4 protein_coding Interval_50782 chr14 19817879 19818377 + 0 NA intron (ENSMUSG00000021807.6, intron 3 of 7) protein_coding-intron (ENSMUSG00000021807.6, intron 3 of 7) 4927 ENSMUSG00000021807.6 ENSMUSG00000021807 ENSMUST00000225615 Rtraf protein_coding Interval_140943 chr6 122915729 122916998 + 0 NA Intergenic Intergenic -5485 ENSMUSG00000049037.8 ENSMUSG00000049037 ENSMUST00000060484 Clec4a1 protein_coding Interval_145030 chr7 29528442 29529232 + 0 NA exon (ENSMUSG00000074224.3, exon 3 of 5) transcribed_unitary_pseudogene-exon (ENSMUSG00000074224.3, exon 3 of 5) 4294 ENSMUSG00000074224.3 ENSMUSG00000074224 ENSMUST00000098602 4932431P20Rik transcribed_unitary_pseudogene Interval_39811 chr12 98670512 98670852 + 0 NA TTS (ENSMUSG00000021007.14) protein_coding-TTS (ENSMUSG00000021007.14) 13068 ENSMUSG00000021009.15 ENSMUSG00000021009 ENSMUST00000222071 Ptpn21 protein_coding Interval_78312 chr18 11910280 11913178 + 0 NA intron (ENSMUSG00000040957.15, intron 4 of 9) protein_coding-intron (ENSMUSG00000040957.15, intron 3 of 8) -1402 ENSMUSG00000117430.1 ENSMUSG00000117430 ENSMUST00000234828 Gm49968 TEC Interval_70236 chr17 7161178 7161429 + 0 NA Intergenic Intergenic -8824 ENSMUSG00000023809.10 ENSMUSG00000023809 ENSMUST00000231530 Rps6ka2 protein_coding Interval_69642 chr16 94789977 94790341 + 0 NA intron (ENSMUSG00000043301.16, intron 3 of 3) protein_coding-intron (ENSMUSG00000043301.16, intron 3 of 4) 66513 ENSMUSG00000043301.16 ENSMUSG00000043301 ENSMUST00000231744 Kcnj6 protein_coding Interval_111884 chr4 32248076 32249048 + 0 NA intron (ENSMUSG00000040270.16, intron 1 of 1) protein_coding-intron (ENSMUSG00000040270.16, intron 1 of 7) -3199 ENSMUSG00000087049.1 ENSMUSG00000087049 ENSMUST00000133451 Bach2it1 sense_intronic Interval_13245 chr10 13536876 13537232 + 0 NA intron (ENSMUSG00000019809.16, intron 4 of 11) protein_coding-intron (ENSMUSG00000019809.16, intron 4 of 11) -15840 ENSMUSG00000019808.8 ENSMUSG00000019808 ENSMUST00000019944 Adat2 protein_coding Interval_57657 chr15 13491741 13491998 + 0 NA Intergenic Intergenic 10520 ENSMUSG00000115703.1 ENSMUSG00000115703 ENSMUST00000227027 Gm49112 processed_pseudogene Interval_174444 chrX 152341908 152342972 + 0 NA promoter-TSS (ENSMUSG00000041096.13) protein_coding-promoter-TSS (ENSMUSG00000041096.13) -596 ENSMUSG00000041096.13 ENSMUSG00000041096 ENSMUST00000177748 Tspyl2 protein_coding Interval_152733 chr7 137000587 137001049 + 0 NA intron (ENSMUSG00000054612.4, intron 2 of 4) protein_coding-intron (ENSMUSG00000054612.4, intron 2 of 4) 79877 ENSMUSG00000109721.1 ENSMUSG00000109721 ENSMUST00000210484 Gm45280 TEC Interval_114237 chr4 69754546 69755039 + 0 NA Intergenic Intergenic 62814 ENSMUSG00000082998.3 ENSMUSG00000082998 ENSMUST00000117230 Gm11221 processed_pseudogene Interval_79021 chr18 23993444 23994702 + 0 NA intron (ENSMUSG00000063281.9, intron 2 of 2) protein_coding-intron (ENSMUSG00000063281.9, intron 2 of 2) 4441 ENSMUSG00000063281.9 ENSMUSG00000063281 ENSMUST00000074941 Zfp35 protein_coding Interval_67538 chr16 50437203 50438508 + 0 NA Intergenic Intergenic -5546 ENSMUSG00000022641.15 ENSMUSG00000022641 ENSMUST00000130210 Bbx protein_coding Interval_51405 chr14 27259510 27261720 + 0 NA intron (ENSMUSG00000021895.10, intron 1 of 10) protein_coding-intron (ENSMUSG00000021895.10, intron 1 of 10) 22553 ENSMUSG00000114888.1 ENSMUSG00000114888 ENSMUST00000225718 Gm49616 TEC Interval_158888 chr8 87742250 87742589 + 0 NA intron (ENSMUSG00000045333.15, intron 3 of 5) protein_coding-intron (ENSMUSG00000045333.15, intron 4 of 6) 105762 ENSMUSG00000089301.1 ENSMUSG00000089301 ENSMUST00000158676 Gm24841 misc_RNA Interval_27721 chr11 69670915 69672904 + 0 NA promoter-TSS (ENSMUSG00000059796.16) protein_coding-promoter-TSS (ENSMUSG00000059796.16) 408 ENSMUSG00000059796.16 ENSMUSG00000059796 ENSMUST00000129295 Eif4a1 protein_coding Interval_103299 chr3 38259925 38261201 + 0 NA Intergenic Intergenic 7521 ENSMUSG00000092986.2 ENSMUSG00000092986 ENSMUST00000175245 Gm25574 misc_RNA Interval_105642 chr3 88305488 88306695 + 0 NA intron (ENSMUSG00000001416.13, intron 6 of 12) protein_coding-intron (ENSMUSG00000001416.13, intron 6 of 13) 8974 ENSMUSG00000001416.13 ENSMUSG00000001416 ENSMUST00000168971 Cct3 protein_coding Interval_18566 chr10 87854385 87854657 + 0 NA intron (ENSMUSG00000058934.8, intron 1 of 1) antisense-intron (ENSMUSG00000058934.8, intron 1 of 1) -5090 ENSMUSG00000020053.18 ENSMUSG00000020053 ENSMUST00000122100 Igf1 protein_coding Interval_122597 chr5 24093432 24094645 + 0 NA Intergenic Intergenic -6568 ENSMUSG00000028986.12 ENSMUSG00000028986 ENSMUST00000199530 Klhl7 protein_coding Interval_86694 chr19 42675359 42675654 + 0 NA Intergenic Intergenic 24396 ENSMUSG00000077768.1 ENSMUSG00000077768 ENSMUST00000104580 Gm25216 snoRNA Interval_134365 chr6 26834256 26834781 + 0 NA Intergenic Intergenic 4101 ENSMUSG00000106742.1 ENSMUSG00000106742 ENSMUST00000201073 Gm42474 processed_pseudogene Interval_79691 chr18 34551517 34552333 + 0 NA Intergenic Intergenic 9612 ENSMUSG00000012282.2 ENSMUSG00000012282 ENSMUST00000012426 Wnt8a protein_coding Interval_154218 chr8 13502472 13502794 + 0 NA Intergenic Intergenic -8143 ENSMUSG00000031451.6 ENSMUSG00000031451 ENSMUST00000033828 Gas6 protein_coding Interval_151195 chr7 119380149 119380474 + 0 NA Intergenic Intergenic -74063 ENSMUSG00000077653.1 ENSMUSG00000077653 ENSMUST00000104465 Gm23321 snoRNA Interval_74750 chr17 56309820 56310030 + 0 NA intron (ENSMUSG00000001228.14, intron 3 of 3) protein_coding-intron (ENSMUSG00000001228.14, intron 3 of 16) 5518 ENSMUSG00000001228.14 ENSMUSG00000001228 ENSMUST00000139654 Uhrf1 protein_coding Interval_168703 chr9 86140935 86141149 + 0 NA Intergenic Intergenic 34973 ENSMUSG00000111418.1 ENSMUSG00000111418 ENSMUST00000216119 Gm18016 processed_pseudogene Interval_136919 chr6 64512272 64512597 + 0 NA intron (ENSMUSG00000071424.10, intron 13 of 15) protein_coding-intron (ENSMUSG00000071424.10, intron 13 of 15) 98786 ENSMUSG00000064775.1 ENSMUSG00000064775 ENSMUST00000082841 Gm25205 snRNA Interval_36884 chr12 54946339 54946643 + 0 NA intron (ENSMUSG00000035021.13, intron 5 of 26) protein_coding-intron (ENSMUSG00000035021.13, intron 5 of 26) -16152 ENSMUSG00000035021.13 ENSMUSG00000035021 ENSMUST00000173529 Baz1a protein_coding Interval_6196 chr1 100994089 100994726 + 0 NA Intergenic Intergenic 132614 ENSMUSG00000077039.1 ENSMUSG00000077039 ENSMUST00000103851 Gm25537 miRNA Interval_149195 chr7 96184402 96186082 + 0 NA intron (ENSMUSG00000048078.16, intron 1 of 32) protein_coding-intron (ENSMUSG00000048078.16, intron 1 of 32) 18294 ENSMUSG00000108528.1 ENSMUSG00000108528 ENSMUST00000205708 Gm8319 processed_pseudogene Interval_112804 chr4 45106235 45109001 + 0 NA intron (ENSMUSG00000078713.8, intron 1 of 2) protein_coding-intron (ENSMUSG00000078713.8, intron 1 of 1) 496 ENSMUSG00000078713.8 ENSMUSG00000078713 ENSMUST00000107807 Tomm5 protein_coding Interval_30895 chr11 97112527 97113001 + 0 NA intron (ENSMUSG00000001444.2, intron 1 of 5) protein_coding-intron (ENSMUSG00000001444.2, intron 1 of 5) 2567 ENSMUSG00000001444.2 ENSMUSG00000001444 ENSMUST00000001484 Tbx21 protein_coding Interval_2362 chr1 38476280 38476489 + 0 NA intron (ENSMUSG00000037138.18, intron 5 of 22) protein_coding-intron (ENSMUSG00000037138.18, intron 5 of 7) -11135 ENSMUSG00000102984.1 ENSMUSG00000102984 ENSMUST00000195175 Gm34727 processed_pseudogene Interval_20480 chr10 117849038 117849301 + 0 NA Intergenic Intergenic -15501 ENSMUSG00000112458.1 ENSMUSG00000112458 ENSMUST00000218113 Gm40773 lincRNA Interval_6925 chr1 120763073 120763946 + 0 NA TTS (ENSMUSG00000101386.1) lincRNA-TTS (ENSMUSG00000101386.1) 5066 ENSMUSG00000101386.1 ENSMUSG00000101386 ENSMUST00000188147 Gm29346 lincRNA Interval_20225 chr10 116266625 116267646 + 0 NA intron (ENSMUSG00000020151.16, intron 10 of 10) protein_coding-intron (ENSMUSG00000020151.16, intron 13 of 13) -8388 ENSMUSG00000020154.10 ENSMUSG00000020154 ENSMUST00000092167 Ptprb protein_coding Interval_91828 chr2 49921207 49922091 + 0 NA intron (ENSMUSG00000026765.12, intron 3 of 5) protein_coding-intron (ENSMUSG00000026765.12, intron 4 of 9) -14769 ENSMUSG00000088825.1 ENSMUSG00000088825 ENSMUST00000158200 Gm25223 misc_RNA Interval_76056 chr17 74620929 74621133 + 0 NA intron (ENSMUSG00000024073.16, intron 33 of 72) protein_coding-intron (ENSMUSG00000024073.16, intron 33 of 72) -3912 ENSMUSG00000097546.1 ENSMUSG00000097546 ENSMUST00000181387 Gm26749 antisense Interval_68056 chr16 64783908 64784075 + 0 NA intron (ENSMUSG00000047141.5, intron 8 of 8) protein_coding-intron (ENSMUSG00000047141.5, intron 1 of 1) -17335 ENSMUSG00000059920.9 ENSMUSG00000059920 ENSMUST00000076991 4930453N24Rik protein_coding Interval_62252 chr15 89174999 89175762 + 0 NA intron (ENSMUSG00000036606.17, intron 1 of 37) protein_coding-intron (ENSMUSG00000036606.17, intron 1 of 37) 10157 ENSMUSG00000098663.1 ENSMUSG00000098663 ENSMUST00000184207 Mir6958 miRNA Interval_11606 chr1 183246147 183246511 + 0 NA Intergenic Intergenic 23245 ENSMUSG00000118599.1 ENSMUSG00000118599 ENSMUST00000239174 AC122792.1 unitary_pseudogene Interval_102783 chr3 31003253 31003846 + 0 NA intron (ENSMUSG00000037643.14, intron 1 of 17) protein_coding-intron (ENSMUSG00000037643.14, intron 1 of 17) 28900 ENSMUSG00000102741.1 ENSMUSG00000102741 ENSMUST00000193442 Gm2979 processed_pseudogene Interval_134805 chr6 31685542 31685898 + 0 NA intron (ENSMUSG00000086804.8, intron 4 of 6) lincRNA-intron (ENSMUSG00000086804.8, intron 2 of 2) 19442 ENSMUSG00000086804.8 ENSMUSG00000086804 ENSMUST00000210985 Gm43154 lincRNA Interval_94677 chr2 93238974 93239229 + 0 NA intron (ENSMUSG00000027217.13, intron 2 of 9) protein_coding-intron (ENSMUSG00000027217.13, intron 2 of 9) 51553 ENSMUSG00000068735.14 ENSMUSG00000068735 ENSMUST00000143164 Trp53i11 protein_coding Interval_116810 chr4 117391863 117392660 + 0 NA intron (ENSMUSG00000028677.19, intron 2 of 2) protein_coding-intron (ENSMUSG00000028677.19, intron 2 of 14) -53689 ENSMUSG00000086876.1 ENSMUSG00000086876 ENSMUST00000136115 Gm12828 antisense Interval_26157 chr11 54796126 54797361 + 0 NA Intergenic Intergenic -9097 ENSMUSG00000052298.12 ENSMUSG00000052298 ENSMUST00000123424 Cdc42se2 protein_coding Interval_110470 chr3 158949569 158949818 + 0 NA Intergenic Intergenic -10753 ENSMUSG00000097966.1 ENSMUSG00000097966 ENSMUST00000183173 Gm9423 processed_pseudogene Interval_68772 chr16 86052733 86053199 + 0 NA Intergenic Intergenic 37511 ENSMUSG00000116669.1 ENSMUSG00000116669 ENSMUST00000232085 Gm49570 processed_pseudogene Interval_36586 chr12 50978656 50979059 + 0 NA Intergenic Intergenic 26016 ENSMUSG00000112685.1 ENSMUSG00000112685 ENSMUST00000218991 Gm40421 lincRNA Interval_11973 chr1 187974593 187975233 + 0 NA intron (ENSMUSG00000026610.13, intron 3 of 3) protein_coding-intron (ENSMUSG00000026610.13, intron 2 of 7) 34077 ENSMUSG00000103577.1 ENSMUSG00000103577 ENSMUST00000195397 9330162B11Rik antisense Interval_60601 chr15 75615444 75617169 + 0 NA promoter-TSS (ENSMUSG00000047003.15) protein_coding-promoter-TSS (ENSMUSG00000047003.15) -373 ENSMUSG00000047003.15 ENSMUSG00000047003 ENSMUST00000161555 Zfp41 protein_coding Interval_164471 chr9 37273752 37274056 + 0 NA Intergenic Intergenic -1356 ENSMUSG00000111738.1 ENSMUSG00000111738 ENSMUST00000215832 Gm18329 processed_pseudogene Interval_54336 chr14 67774442 67774740 + 0 NA exon (ENSMUSG00000044447.5, exon 40 of 52) protein_coding-exon (ENSMUSG00000044447.5, exon 40 of 52) -9632 ENSMUSG00000044447.5 ENSMUSG00000044447 ENSMUST00000224823 Dock5 protein_coding Interval_71458 chr17 23873752 23874737 + 0 NA Intergenic Intergenic 3000 ENSMUSG00000024116.6 ENSMUSG00000024116 ENSMUST00000235013 Prss21 protein_coding Interval_151187 chr7 119183982 119186589 + 0 NA promoter-TSS (ENSMUSG00000066197.5) protein_coding-promoter-TSS (ENSMUSG00000066197.5) -682 ENSMUSG00000066197.5 ENSMUSG00000066197 ENSMUST00000084650 Gpr139 protein_coding Interval_117448 chr4 123731917 123734175 + 0 NA Intergenic Intergenic -14865 ENSMUSG00000028648.13 ENSMUSG00000028648 ENSMUST00000137312 Ndufs5 protein_coding Interval_16158 chr10 61097428 61097615 + 0 NA Intergenic Intergenic 8190 ENSMUSG00000020098.7 ENSMUSG00000020098 ENSMUST00000020298 Pcbd1 protein_coding Interval_148105 chr7 79254734 79256009 + 0 NA Intergenic Intergenic 17440 ENSMUSG00000108387.1 ENSMUSG00000108387 ENSMUST00000206434 Gm31510 bidirectional_promoter_lncRNA Interval_122129 chr5 17766262 17766498 + 0 NA Intergenic Intergenic 69337 ENSMUSG00000002944.15 ENSMUSG00000002944 ENSMUST00000197574 Cd36 protein_coding Interval_50484 chr14 13973963 13974155 + 0 NA intron (ENSMUSG00000021738.5, intron 1 of 12) protein_coding-intron (ENSMUSG00000021738.5, intron 1 of 12) -16428 ENSMUSG00000053453.9 ENSMUSG00000053453 ENSMUST00000226008 Thoc7 protein_coding Interval_172179 chrX 8229763 8230734 + 0 NA Intergenic Intergenic 16108 ENSMUSG00000031171.11 ENSMUSG00000031171 ENSMUST00000147467 Ftsj1 protein_coding Interval_143368 chr7 6171537 6173213 + 0 NA promoter-TSS (ENSMUSG00000044876.15) protein_coding-promoter-TSS (ENSMUSG00000044876.15) -1599 ENSMUSG00000044876.15 ENSMUSG00000044876 ENSMUST00000136777 Zfp444 protein_coding Interval_137840 chr6 82874233 82874421 + 0 NA Intergenic Intergenic 7505 ENSMUSG00000100291.6 ENSMUSG00000100291 ENSMUST00000191170 2310069B03Rik lincRNA Interval_87553 chr19 53404818 53405353 + 0 NA Intergenic Intergenic 14296 ENSMUSG00000117768.1 ENSMUSG00000117768 ENSMUST00000238029 8030456M14Rik bidirectional_promoter_lncRNA Interval_33529 chr11 117056803 117058114 + 0 NA promoter-TSS (ENSMUSG00000085104.1) lincRNA-promoter-TSS (ENSMUSG00000085104.1) -967 ENSMUSG00000085104.1 ENSMUSG00000085104 ENSMUST00000139704 Gm11731 lincRNA Interval_24806 chr11 38966826 38967168 + 0 NA Intergenic Intergenic -168720 ENSMUSG00000070249.1 ENSMUSG00000070249 ENSMUST00000093736 Gm23520 snRNA Interval_474 chr1 6117575 6118071 + 0 NA Intergenic Intergenic -67778 ENSMUSG00000103090.1 ENSMUSG00000103090 ENSMUST00000191956 Gm19214 processed_pseudogene Interval_148075 chr7 79063601 79064159 + 0 NA intron (ENSMUSG00000030607.7, intron 1 of 16) protein_coding-intron (ENSMUSG00000030607.7, intron 1 of 16) -10557 ENSMUSG00000097441.1 ENSMUSG00000097441 ENSMUST00000180546 Gm26633 antisense Interval_42327 chr13 12136087 12136807 + 0 NA Intergenic Intergenic -24307 ENSMUSG00000113347.1 ENSMUSG00000113347 ENSMUST00000220496 Gm47323 processed_pseudogene Interval_59199 chr15 47863802 47864167 + 0 NA intron (ENSMUSG00000022311.15, intron 27 of 70) protein_coding-intron (ENSMUSG00000022311.15, intron 27 of 70) 63311 ENSMUSG00000077752.1 ENSMUSG00000077752 ENSMUST00000104564 Gm23530 snoRNA Interval_2902 chr1 48815098 48815631 + 0 NA Intergenic Intergenic 31701 ENSMUSG00000099376.1 ENSMUSG00000099376 ENSMUST00000191041 Gm19124 processed_pseudogene Interval_25187 chr11 44976559 44976839 + 0 NA intron (ENSMUSG00000057098.14, intron 11 of 15) protein_coding-intron (ENSMUSG00000057098.14, intron 11 of 15) 140229 ENSMUSG00000084773.1 ENSMUSG00000084773 ENSMUST00000143869 Gm12159 lincRNA Interval_155673 chr8 36010220 36010425 + 0 NA Intergenic Intergenic -15431 ENSMUSG00000098181.1 ENSMUSG00000098181 ENSMUST00000182321 Rps12-ps24 processed_pseudogene Interval_150771 chr7 114268912 114269433 + 0 NA intron (ENSMUSG00000030751.18, intron 7 of 9) protein_coding-intron (ENSMUSG00000030751.18, intron 7 of 9) 6895 ENSMUSG00000030751.18 ENSMUSG00000030751 ENSMUST00000210966 Psma1 protein_coding Interval_120750 chr4 150426861 150427130 + 0 NA intron (ENSMUSG00000039852.17, intron 1 of 3) protein_coding-intron (ENSMUSG00000039852.17, intron 2 of 22) 105802 ENSMUSG00000089292.1 ENSMUSG00000089292 ENSMUST00000158667 Gm23209 snRNA Interval_115289 chr4 95360483 95360805 + 0 NA Intergenic Intergenic 42146 ENSMUSG00000100129.1 ENSMUSG00000100129 ENSMUST00000187014 Gm29064 lincRNA Interval_72459 chr17 29931104 29932140 + 0 NA intron (ENSMUSG00000043557.16, intron 2 of 20) protein_coding-intron (ENSMUSG00000043557.16, intron 2 of 20) 41538 ENSMUSG00000086534.2 ENSMUSG00000086534 ENSMUST00000149552 Gm16758 antisense Interval_58968 chr15 41137677 41137983 + 0 NA Intergenic Intergenic -35657 ENSMUSG00000048559.5 ENSMUSG00000048559 ENSMUST00000060066 4930555K19Rik processed_pseudogene Interval_22862 chr11 16841230 16841579 + 0 NA intron (ENSMUSG00000020122.16, intron 1 of 15) protein_coding-intron (ENSMUSG00000020122.16, intron 1 of 27) -10702 ENSMUSG00000085091.1 ENSMUSG00000085091 ENSMUST00000150329 Egfros antisense Interval_115080 chr4 89350055 89352119 + 0 NA Intergenic Intergenic -30870 ENSMUSG00000085147.1 ENSMUSG00000085147 ENSMUST00000129908 Gm12609 processed_transcript Interval_139759 chr6 108444987 108445201 + 0 NA intron (ENSMUSG00000030102.11, intron 4 of 5) protein_coding-intron (ENSMUSG00000030102.11, intron 44 of 61) -11089 ENSMUSG00000098674.1 ENSMUSG00000098674 ENSMUST00000184343 Gm27813 misc_RNA Interval_47894 chr13 94223395 94225882 + 0 NA TTS (ENSMUSG00000021687.14) protein_coding-TTS (ENSMUSG00000021687.14) 21920 ENSMUSG00000021687.14 ENSMUSG00000021687 ENSMUST00000138255 Scamp1 protein_coding Interval_79255 chr18 27836887 27837658 + 0 NA Intergenic Intergenic 27540 ENSMUSG00000117467.1 ENSMUSG00000117467 ENSMUST00000234286 Gm33674 lincRNA Interval_132566 chr5 146370889 146371689 + 0 NA Intergenic Intergenic -84320 ENSMUSG00000029636.11 ENSMUSG00000029636 ENSMUST00000238592 Wasf3 protein_coding Interval_54498 chr14 70262504 70262991 + 0 NA intron (ENSMUSG00000022092.11, intron 3 of 14) protein_coding-intron (ENSMUSG00000022092.11, intron 3 of 13) -25178 ENSMUSG00000115645.1 ENSMUSG00000115645 ENSMUST00000227159 Gm49288 processed_pseudogene Interval_143825 chr7 16524289 16525429 + 0 NA intron (ENSMUSG00000058230.12, intron 4 of 7) protein_coding-intron (ENSMUSG00000058230.12, intron 3 of 6) -9721 ENSMUSG00000101135.1 ENSMUSG00000101135 ENSMUST00000191109 Gm17981 processed_pseudogene Interval_1003 chr1 13795196 13795549 + 0 NA Intergenic Intergenic -8493 ENSMUSG00000097711.1 ENSMUSG00000097711 ENSMUST00000180415 Gm5523 processed_pseudogene Interval_77499 chr17 90323654 90323931 + 0 NA intron (ENSMUSG00000024109.18, intron 2 of 2) protein_coding-intron (ENSMUSG00000024109.18, intron 16 of 20) 61240 ENSMUSG00000092706.1 ENSMUSG00000092706 ENSMUST00000174965 Gm24510 miRNA Interval_13713 chr10 21335301 21336084 + 0 NA intron (ENSMUSG00000112654.1, intron 1 of 3) protein_coding-intron (ENSMUSG00000019977.16, intron 4 of 17) 6365 ENSMUSG00000112654.1 ENSMUSG00000112654 ENSMUST00000218108 4930455C13Rik antisense Interval_7058 chr1 124674557 124674765 + 0 NA intron (ENSMUSG00000036815.17, intron 1 of 2) protein_coding-intron (ENSMUSG00000036815.17, intron 1 of 2) -59065 ENSMUSG00000101006.1 ENSMUSG00000101006 ENSMUST00000189908 Gm28299 processed_pseudogene Interval_31825 chr11 103164519 103165058 + 0 NA Intergenic Intergenic -6319 ENSMUSG00000055805.15 ENSMUSG00000055805 ENSMUST00000129726 Fmnl1 protein_coding Interval_107828 chr3 115936659 115937613 + 0 NA Intergenic Intergenic -5346 ENSMUSG00000104723.1 ENSMUSG00000104723 ENSMUST00000199485 Gm43106 processed_pseudogene Interval_69934 chr17 3290190 3290499 + 0 NA intron (ENSMUSG00000116858.1, intron 1 of 3) lincRNA-intron (ENSMUSG00000116858.1, intron 1 of 3) -7137 ENSMUSG00000116874.1 ENSMUSG00000116874 ENSMUST00000231652 Gm34035 lincRNA Interval_42447 chr13 13641676 13641867 + 0 NA intron (ENSMUSG00000019726.12, intron 2 of 2) protein_coding-intron (ENSMUSG00000019726.12, intron 8 of 52) -42320 ENSMUSG00000019726.12 ENSMUSG00000019726 ENSMUST00000221587 Lyst protein_coding Interval_80657 chr18 45570044 45570551 + 0 NA intron (ENSMUSG00000054477.16, intron 2 of 6) protein_coding-intron (ENSMUSG00000054477.16, intron 5 of 10) -10167 ENSMUSG00000118074.1 ENSMUSG00000118074 ENSMUST00000235309 Gm31907 transcribed_processed_pseudogene Interval_130479 chr5 128202592 128202900 + 0 NA intron (ENSMUSG00000034310.8, intron 2 of 8) protein_coding-intron (ENSMUSG00000034310.8, intron 2 of 8) 38593 ENSMUSG00000104581.1 ENSMUSG00000104581 ENSMUST00000197363 Gm42497 TEC Interval_35119 chr12 17419390 17421175 + 0 NA intron (ENSMUSG00000061458.9, intron 19 of 20) protein_coding-intron (ENSMUSG00000061458.9, intron 19 of 20) -16336 ENSMUSG00000113246.1 ENSMUSG00000113246 ENSMUST00000220527 Gm36752 lincRNA Interval_47379 chr13 82528806 82529344 + 0 NA Intergenic Intergenic -149432 ENSMUSG00000114932.1 ENSMUSG00000114932 ENSMUST00000224376 Gm4936 processed_pseudogene Interval_142353 chr6 140803894 140804279 + 0 NA Intergenic Intergenic -19382 ENSMUSG00000108039.1 ENSMUSG00000108039 ENSMUST00000203498 Gm43925 processed_pseudogene Interval_106625 chr3 97887913 97888995 + 0 NA intron (ENSMUSG00000038170.15, intron 1 of 45) protein_coding-intron (ENSMUSG00000038170.15, intron 1 of 46) 12635 ENSMUSG00000086557.1 ENSMUSG00000086557 ENSMUST00000127317 Gm15999 lincRNA Interval_135322 chr6 38326577 38327347 + 0 NA intron (ENSMUSG00000029826.14, intron 6 of 11) protein_coding-intron (ENSMUSG00000029826.14, intron 6 of 8) 27311 ENSMUSG00000029826.14 ENSMUSG00000029826 ENSMUST00000114898 Zc3hav1 protein_coding Interval_121573 chr5 3529242 3529651 + 0 NA exon (ENSMUSG00000040274.11, exon 8 of 8) protein_coding-exon (ENSMUSG00000040274.11, exon 8 of 8) -14591 ENSMUSG00000105656.1 ENSMUSG00000105656 ENSMUST00000198296 Gm43017 sense_intronic Interval_124915 chr5 60528415 60528737 + 0 NA Intergenic Intergenic -27636 ENSMUSG00000088048.1 ENSMUSG00000088048 ENSMUST00000157423 Gm23331 snRNA Interval_36266 chr12 40471538 40473606 + 0 NA intron (ENSMUSG00000035954.10, intron 1 of 5) protein_coding-intron (ENSMUSG00000035954.10, intron 1 of 52) 26489 ENSMUSG00000035954.10 ENSMUSG00000035954 ENSMUST00000220850 Dock4 protein_coding Interval_22364 chr11 9150211 9151119 + 0 NA promoter-TSS (ENSMUSG00000101841.1) processed_pseudogene-promoter-TSS (ENSMUSG00000101841.1) -68 ENSMUSG00000101841.1 ENSMUSG00000101841 ENSMUST00000121861 Gm11993 processed_pseudogene Interval_64321 chr16 10467475 10468980 + 0 NA Intergenic Intergenic -20900 ENSMUSG00000050908.12 ENSMUSG00000050908 ENSMUST00000141587 Tvp23a protein_coding Interval_39943 chr12 99971666 99974020 + 0 NA intron (ENSMUSG00000045404.16, intron 2 of 2) protein_coding-intron (ENSMUSG00000045404.16, intron 2 of 2) 8344 ENSMUSG00000045404.16 ENSMUSG00000045404 ENSMUST00000049788 Kcnk13 protein_coding Interval_122109 chr5 17141803 17142037 + 0 NA Intergenic Intergenic 86014 ENSMUSG00000091273.1 ENSMUSG00000091273 ENSMUST00000166114 Gm6673 unprocessed_pseudogene Interval_128193 chr5 111626270 111626817 + 0 NA Intergenic Intergenic 32927 ENSMUSG00000104833.1 ENSMUSG00000104833 ENSMUST00000198964 Gm42489 lincRNA Interval_124354 chr5 44418674 44419009 + 0 NA intron (ENSMUSG00000104800.1, intron 2 of 3) lincRNA-intron (ENSMUSG00000104800.1, intron 2 of 3) 8751 ENSMUSG00000104800.1 ENSMUSG00000104800 ENSMUST00000199005 Gm36017 lincRNA Interval_67797 chr16 57261934 57262330 + 0 NA Intergenic Intergenic 3673 ENSMUSG00000116675.1 ENSMUSG00000116675 ENSMUST00000231600 Gm49581 processed_pseudogene Interval_88306 chr2 3531286 3531549 + 0 NA exon (ENSMUSG00000081278.1, exon 1 of 1) processed_pseudogene-exon (ENSMUSG00000081278.1, exon 1 of 1) 132 ENSMUSG00000081278.1 ENSMUSG00000081278 ENSMUST00000118031 Gm13186 processed_pseudogene Interval_46676 chr13 68607654 68608728 + 0 NA intron (ENSMUSG00000021534.8, intron 1 of 3) protein_coding-intron (ENSMUSG00000021534.8, intron 1 of 2) 10752 ENSMUSG00000021534.8 ENSMUSG00000021534 ENSMUST00000222604 1700001L19Rik protein_coding Interval_94971 chr2 102290179 102290685 + 0 NA Intergenic Intergenic 21775 ENSMUSG00000083306.1 ENSMUSG00000083306 ENSMUST00000122411 Gm13868 processed_pseudogene Interval_167737 chr9 72393404 72393631 + 0 NA intron (ENSMUSG00000097211.2, intron 1 of 1) antisense-intron (ENSMUSG00000097211.2, intron 1 of 1) -2463 ENSMUSG00000098959.1 ENSMUSG00000098959 ENSMUST00000184355 Gm27230 processed_transcript Interval_114537 chr4 82374370 82375067 + 0 NA intron (ENSMUSG00000008575.17, intron 3 of 4) protein_coding-intron (ENSMUSG00000008575.17, intron 3 of 11) -64692 ENSMUSG00000084595.1 ENSMUSG00000084595 ENSMUST00000122646 n-R5s188 rRNA Interval_1801 chr1 33871945 33872320 + 0 NA intron (ENSMUSG00000042182.16, intron 2 of 3) protein_coding-intron (ENSMUSG00000042182.16, intron 3 of 6) 11348 ENSMUSG00000042182.16 ENSMUSG00000042182 ENSMUST00000139700 Bend6 protein_coding Interval_103820 chr3 53341439 53342312 + 0 NA Intergenic Intergenic 5354 ENSMUSG00000106660.1 ENSMUSG00000106660 ENSMUST00000200175 Gm43472 processed_pseudogene Interval_146006 chr7 43077417 43078616 + 0 NA promoter-TSS (ENSMUSG00000107181.1) lincRNA-promoter-TSS (ENSMUSG00000107181.1) -35 ENSMUSG00000107181.1 ENSMUSG00000107181 ENSMUST00000201257 Gm17768 lincRNA Interval_147780 chr7 73524145 73525190 + 0 NA intron (ENSMUSG00000078671.11, intron 1 of 4) protein_coding-intron (ENSMUSG00000078671.11, intron 2 of 8) 4058 ENSMUSG00000108812.1 ENSMUSG00000108812 ENSMUST00000205707 C130083A15Rik TEC Interval_153898 chr8 10881833 10882058 + 0 NA intron (ENSMUSG00000109473.1, intron 1 of 4) lincRNA-intron (ENSMUSG00000109473.1, intron 1 of 5) 490 ENSMUSG00000109473.1 ENSMUSG00000109473 ENSMUST00000208358 B930025P03Rik lincRNA Interval_39670 chr12 91970936 91971379 + 0 NA Intergenic Intergenic -1580 ENSMUSG00000098159.1 ENSMUSG00000098159 ENSMUST00000183260 Gm21614 processed_pseudogene Interval_3428 chr1 58280502 58281443 + 0 NA intron (ENSMUSG00000079554.2, intron 1 of 35) protein_coding-intron (ENSMUSG00000079554.2, intron 1 of 35) 2646 ENSMUSG00000079554.2 ENSMUSG00000079554 ENSMUST00000114366 Aox2 protein_coding Interval_54989 chr14 76695053 76697013 + 0 NA Intergenic Intergenic 18379 ENSMUSG00000101009.6 ENSMUSG00000101009 ENSMUST00000191384 1700108F19Rik processed_transcript Interval_46228 chr13 62785277 62786297 + 0 NA promoter-TSS (ENSMUSG00000091183.5) protein_coding-promoter-TSS (ENSMUSG00000091183.5) -3 ENSMUSG00000091183.5 ENSMUSG00000091183 ENSMUST00000202582 Gm5141 protein_coding Interval_88242 chr19 61084240 61085003 + 0 NA intron (ENSMUSG00000003228.9, intron 12 of 15) protein_coding-intron (ENSMUSG00000003228.9, intron 12 of 15) 56196 ENSMUSG00000074733.14 ENSMUSG00000074733 ENSMUST00000148569 Zfp950 protein_coding Interval_163290 chr9 20635530 20637076 + 0 NA intron (ENSMUSG00000066892.14, intron 1 of 1) protein_coding-intron (ENSMUSG00000066892.14, intron 1 of 1) 6010 ENSMUSG00000066892.14 ENSMUSG00000066892 ENSMUST00000153154 Fbxl12 protein_coding Interval_87118 chr19 46253736 46254655 + 0 NA intron (ENSMUSG00000025224.16, intron 6 of 18) protein_coding-intron (ENSMUSG00000025224.16, intron 6 of 39) 13474 ENSMUSG00000086816.1 ENSMUSG00000086816 ENSMUST00000130184 Gm16726 antisense Interval_57459 chr15 11357200 11358253 + 0 NA Intergenic Intergenic 4011 ENSMUSG00000089304.1 ENSMUSG00000089304 ENSMUST00000158679 Gm24844 snoRNA Interval_101552 chr3 5435249 5435562 + 0 NA Intergenic Intergenic 79928 ENSMUSG00000093557.1 ENSMUSG00000093557 ENSMUST00000176666 4930555M17Rik lincRNA Interval_5911 chr1 93175633 93177413 + 0 NA intron (ENSMUSG00000084989.3, intron 1 of 31) protein_coding-intron (ENSMUSG00000084989.3, intron 1 of 31) 7798 ENSMUSG00000084989.3 ENSMUSG00000084989 ENSMUST00000138595 Crocc2 protein_coding Interval_41103 chr12 111191286 111191514 + 0 NA intron (ENSMUSG00000021277.16, intron 2 of 4) protein_coding-intron (ENSMUSG00000021277.16, intron 1 of 11) -6909 ENSMUSG00000083193.1 ENSMUSG00000083193 ENSMUST00000121608 4930595D18Rik protein_coding Interval_125608 chr5 72579799 72581403 + 0 NA exon (ENSMUSG00000063935.3, exon 1 of 4) protein_coding-exon (ENSMUSG00000063935.3, exon 1 of 4) 153 ENSMUSG00000063935.3 ENSMUSG00000063935 ENSMUST00000202174 Zar1 protein_coding Interval_103029 chr3 34624950 34625188 + 0 NA intron (ENSMUSG00000105265.4, intron 3 of 4) processed_transcript-intron (ENSMUSG00000105265.4, intron 4 of 4) -13299 ENSMUSG00000084530.2 ENSMUSG00000084530 ENSMUST00000122581 AC137708.1 misc_RNA Interval_168851 chr9 88063971 88065375 + 0 NA Intergenic Intergenic -24981 ENSMUSG00000099584.1 ENSMUSG00000099584 ENSMUST00000191349 Gm28877 processed_pseudogene Interval_53206 chr14 55109639 55109912 + 0 NA exon (ENSMUSG00000022208.12, exon 5 of 6) protein_coding-exon (ENSMUSG00000022208.12, exon 5 of 6) -3628 ENSMUSG00000040701.16 ENSMUSG00000040701 ENSMUST00000144197 Ap1g2 protein_coding Interval_35948 chr12 32422781 32423029 + 0 NA intron (ENSMUSG00000112865.1, intron 1 of 6) lincRNA-intron (ENSMUSG00000112865.1, intron 1 of 6) 9018 ENSMUSG00000112865.1 ENSMUSG00000112865 ENSMUST00000218751 Gm40375 lincRNA Interval_98942 chr2 156217124 156218863 + 0 NA intron (ENSMUSG00000038116.16, intron 1 of 16) protein_coding-intron (ENSMUSG00000038116.16, intron 1 of 17) -4887 ENSMUSG00000038116.16 ENSMUSG00000038116 ENSMUST00000122814 Phf20 protein_coding Interval_148610 chr7 83207115 83207419 + 0 NA Intergenic Intergenic -6943 ENSMUSG00000108861.1 ENSMUSG00000108861 ENSMUST00000207572 5930435M05Rik lincRNA Interval_1022 chr1 14165037 14165633 + 0 NA Intergenic Intergenic -17243 ENSMUSG00000095853.1 ENSMUSG00000095853 ENSMUST00000179783 Gm22616 miRNA Interval_153554 chr8 3394658 3395923 + 0 NA intron (ENSMUSG00000004568.13, intron 1 of 3) protein_coding-intron (ENSMUSG00000004568.13, intron 1 of 19) 41853 ENSMUSG00000004568.13 ENSMUSG00000004568 ENSMUST00000145360 Arhgef18 protein_coding Interval_154887 chr8 24722596 24723464 + 0 NA intron (ENSMUSG00000031553.16, intron 3 of 10) protein_coding-intron (ENSMUSG00000031553.16, intron 3 of 21) 2758 ENSMUSG00000031553.16 ENSMUSG00000031553 ENSMUST00000169598 Adam3 protein_coding Interval_19567 chr10 103346423 103347510 + 0 NA Intergenic Intergenic -46484 ENSMUSG00000019894.14 ENSMUSG00000019894 ENSMUST00000219936 Slc6a15 protein_coding Interval_164244 chr9 34202756 34203458 + 0 NA Intergenic Intergenic 2879 ENSMUSG00000098909.1 ENSMUSG00000098909 ENSMUST00000183960 Gm27161 processed_pseudogene Interval_144668 chr7 27418904 27419897 + 0 NA intron (ENSMUSG00000011751.16, intron 7 of 35) protein_coding-intron (ENSMUSG00000011751.16, intron 7 of 35) -13736 ENSMUSG00000108416.1 ENSMUSG00000108416 ENSMUST00000138087 Gm44924 processed_transcript Interval_129346 chr5 119355551 119356278 + 0 NA Intergenic Intergenic 58669 ENSMUSG00000084548.1 ENSMUSG00000084548 ENSMUST00000122599 n-R5s175 rRNA Interval_90624 chr2 31536597 31537391 + 0 NA Intergenic Intergenic 15701 ENSMUSG00000084226.1 ENSMUSG00000084226 ENSMUST00000117887 Gm13426 processed_pseudogene Interval_107904 chr3 116703956 116705018 + 0 NA intron (ENSMUSG00000027957.13, intron 1 of 5) protein_coding-intron (ENSMUSG00000027957.13, intron 1 of 7) 7725 ENSMUSG00000027957.13 ENSMUSG00000027957 ENSMUST00000169530 Slc35a3 protein_coding Interval_53075 chr14 54247762 54248001 + 0 NA intron (ENSMUSG00000022174.8, intron 1 of 1) protein_coding-intron (ENSMUSG00000022174.8, intron 1 of 2) 6033 ENSMUSG00000022174.8 ENSMUSG00000022174 ENSMUST00000128231 Dad1 protein_coding Interval_160304 chr8 107926454 107926690 + 0 NA Intergenic Intergenic 56887 ENSMUSG00000110625.1 ENSMUSG00000110625 ENSMUST00000212462 5033426E14Rik lincRNA Interval_128724 chr5 114934517 114934833 + 0 NA intron (ENSMUSG00000041827.15, intron 3 of 3) protein_coding-intron (ENSMUSG00000041827.15, intron 5 of 6) -7529 ENSMUSG00000029559.15 ENSMUSG00000029559 ENSMUST00000131771 2210016L21Rik protein_coding Interval_116103 chr4 107686224 107686476 + 0 NA Intergenic Intergenic -1778 ENSMUSG00000081916.1 ENSMUSG00000081916 ENSMUST00000120565 Gm12899 processed_pseudogene Interval_41816 chr12 119843051 119843324 + 0 NA Intergenic Intergenic 33455 ENSMUSG00000114137.1 ENSMUSG00000114137 ENSMUST00000222158 Gm48685 unprocessed_pseudogene Interval_140510 chr6 119063227 119063444 + 0 NA intron (ENSMUSG00000051331.16, intron 1 of 3) protein_coding-intron (ENSMUSG00000051331.16, intron 1 of 46) -129021 ENSMUSG00000041477.14 ENSMUSG00000041477 ENSMUST00000127059 Dcp1b protein_coding Interval_35835 chr12 31057981 31058702 + 0 NA Intergenic Intergenic 1266 ENSMUSG00000077292.1 ENSMUSG00000077292 ENSMUST00000104104 Gm25408 snoRNA Interval_27331 chr11 66551749 66552722 + 0 NA Intergenic Intergenic -11372 ENSMUSG00000080978.2 ENSMUSG00000080978 ENSMUST00000121380 Gm12297 processed_pseudogene Interval_78990 chr18 23676591 23676793 + 0 NA Intergenic Intergenic -24855 ENSMUSG00000114088.1 ENSMUSG00000114088 ENSMUST00000220789 Gm47898 antisense Interval_107496 chr3 108131979 108132225 + 0 NA intron (ENSMUSG00000000001.4, intron 1 of 8) protein_coding-intron (ENSMUSG00000000001.4, intron 1 of 8) 14044 ENSMUSG00000000001.4 ENSMUSG00000000001 ENSMUST00000000001 Gnai3 protein_coding Interval_140834 chr6 122126347 122127059 + 0 NA Intergenic Intergenic -10029 ENSMUSG00000071204.10 ENSMUSG00000071204 ENSMUST00000159439 Gm10319 transcribed_unprocessed_pseudogene Interval_137283 chr6 71040116 71041540 + 0 NA Intergenic Intergenic -1095 ENSMUSG00000077369.1 ENSMUSG00000077369 ENSMUST00000104181 Gm23485 snRNA Interval_67616 chr16 52741780 52742720 + 0 NA Intergenic Intergenic 73494 ENSMUSG00000116611.1 ENSMUSG00000116611 ENSMUST00000232028 4930404A05Rik lincRNA Interval_115987 chr4 106827207 106828802 + 0 NA Intergenic Intergenic 19916 ENSMUSG00000086940.1 ENSMUSG00000086940 ENSMUST00000151369 Gm12746 lincRNA Interval_160773 chr8 112068614 112068846 + 0 NA Intergenic Intergenic 6225 ENSMUSG00000065700.1 ENSMUSG00000065700 ENSMUST00000083766 Gm22827 snRNA Interval_418 chr1 5102893 5103959 + 0 NA intron (ENSMUSG00000033793.12, intron 6 of 10) protein_coding-intron (ENSMUSG00000033793.12, intron 7 of 13) 20294 ENSMUSG00000033793.12 ENSMUSG00000033793 ENSMUST00000192142 Atp6v1h protein_coding Interval_57937 chr15 25635644 25636009 + 0 NA exon (ENSMUSG00000115252.1, exon 1 of 1) TEC-exon (ENSMUSG00000115252.1, exon 1 of 1) 1199 ENSMUSG00000115252.1 ENSMUSG00000115252 ENSMUST00000228949 Gm48996 TEC Interval_141893 chr6 135182175 135183349 + 0 NA intron (ENSMUSG00000042770.8, intron 1 of 1) protein_coding-intron (ENSMUSG00000042770.8, intron 1 of 1) -5718 ENSMUSG00000108239.1 ENSMUSG00000108239 ENSMUST00000204330 Gm19434 antisense Interval_171569 chr9 119247597 119247825 + 0 NA intron (ENSMUSG00000036737.12, intron 13 of 18) protein_coding-intron (ENSMUSG00000036737.12, intron 12 of 17) -16019 ENSMUSG00000092212.3 ENSMUSG00000092212 ENSMUST00000173185 Slc22a13b polymorphic_pseudogene Interval_141640 chr6 131697198 131697516 + 0 NA Intergenic Intergenic -7294 ENSMUSG00000063478.2 ENSMUSG00000063478 ENSMUST00000080619 Tas2r114 protein_coding Interval_42331 chr13 12156107 12157178 + 0 NA Intergenic Intergenic -4112 ENSMUSG00000113347.1 ENSMUSG00000113347 ENSMUST00000220496 Gm47323 processed_pseudogene Interval_18083 chr10 82167630 82168620 + 0 NA Intergenic Intergenic 3878 ENSMUSG00000112847.1 ENSMUSG00000112847 ENSMUST00000218999 Gm47573 TEC Interval_170979 chr9 113457676 113460159 + 0 NA Intergenic Intergenic 38806 ENSMUSG00000111199.1 ENSMUSG00000111199 ENSMUST00000216389 Gm47875 lincRNA Interval_8945 chr1 152603856 152604690 + 0 NA intron (ENSMUSG00000026482.13, intron 2 of 17) protein_coding-intron (ENSMUSG00000026482.13, intron 2 of 17) -51229 ENSMUSG00000026482.13 ENSMUSG00000026482 ENSMUST00000149536 Rgl1 protein_coding Interval_162630 chr9 6979348 6979555 + 0 NA intron (ENSMUSG00000047193.16, intron 84 of 89) protein_coding-intron (ENSMUSG00000047193.16, intron 83 of 88) 138137 ENSMUSG00000047193.16 ENSMUSG00000047193 ENSMUST00000139115 Dync2h1 protein_coding Interval_2284 chr1 37671236 37671877 + 0 NA intron (ENSMUSG00000026090.16, intron 1 of 9) protein_coding-intron (ENSMUSG00000026090.16, intron 2 of 3) 10834 ENSMUSG00000104365.1 ENSMUSG00000104365 ENSMUST00000192005 4930470B04Rik TEC Interval_149252 chr7 96694774 96695037 + 0 NA exon (ENSMUSG00000048078.16, exon 8 of 33) protein_coding-exon (ENSMUSG00000048078.16, exon 8 of 33) -65836 ENSMUSG00000085792.2 ENSMUSG00000085792 ENSMUST00000155217 Gm15414 antisense Interval_5974 chr1 93658728 93659790 + 0 NA promoter-TSS (ENSMUSG00000026277.14) protein_coding-promoter-TSS (ENSMUSG00000026277.14) -600 ENSMUSG00000026277.14 ENSMUSG00000026277 ENSMUST00000186287 Stk25 protein_coding Interval_171629 chr9 119688344 119688657 + 0 NA promoter-TSS (ENSMUSG00000034533.10) protein_coding-promoter-TSS (ENSMUSG00000034533.10) -461 ENSMUSG00000034533.10 ENSMUSG00000034533 ENSMUST00000213401 Scn10a protein_coding Interval_101701 chr3 9014768 9015329 + 0 NA Intergenic Intergenic -10570 ENSMUSG00000027506.15 ENSMUSG00000027506 ENSMUST00000155450 Tpd52 protein_coding Interval_79367 chr18 31280221 31281144 + 0 NA intron (ENSMUSG00000057455.12, intron 1 of 4) protein_coding-intron (ENSMUSG00000057455.12, intron 1 of 3) -67950 ENSMUSG00000057455.12 ENSMUSG00000057455 ENSMUST00000139924 Rit2 protein_coding Interval_4436 chr1 74179595 74180195 + 0 NA Intergenic Intergenic 13340 ENSMUSG00000048480.5 ENSMUSG00000048480 ENSMUST00000053389 Cxcr1 protein_coding Interval_91958 chr2 52031149 52032744 + 0 NA Intergenic Intergenic -6063 ENSMUSG00000053475.5 ENSMUSG00000053475 ENSMUST00000065927 Tnfaip6 protein_coding Interval_43688 chr13 35031953 35032897 + 0 NA promoter-TSS (ENSMUSG00000114061.1) lincRNA-promoter-TSS (ENSMUSG00000114061.1) -479 ENSMUSG00000114061.1 ENSMUSG00000114061 ENSMUST00000220872 Gm48626 lincRNA Interval_162902 chr9 12381522 12381955 + 0 NA Intergenic Intergenic 147744 ENSMUSG00000111810.1 ENSMUSG00000111810 ENSMUST00000217033 Gm29785 processed_pseudogene Interval_163516 chr9 21811090 21811373 + 0 NA intron (ENSMUSG00000032198.9, intron 39 of 49) protein_coding-intron (ENSMUSG00000032198.9, intron 38 of 48) -1231 ENSMUSG00000098473.1 ENSMUSG00000098473 ENSMUST00000184374 Mir7083 miRNA Interval_52640 chr14 48178385 48178791 + 0 NA intron (ENSMUSG00000021846.9, intron 1 of 5) protein_coding-intron (ENSMUSG00000021846.9, intron 2 of 5) -6418 ENSMUSG00000021846.9 ENSMUSG00000021846 ENSMUST00000081029 Peli2 protein_coding Interval_136667 chr6 57382671 57383417 + 0 NA exon (ENSMUSG00000091382.2, exon 3 of 3) protein_coding-exon (ENSMUSG00000091382.2, exon 3 of 3) 12739 ENSMUSG00000091382.2 ENSMUSG00000091382 ENSMUST00000164732 Vmn1r18 protein_coding Interval_75119 chr17 63639467 63639823 + 0 NA Intergenic Intergenic -11691 ENSMUSG00000117060.1 ENSMUSG00000117060 ENSMUST00000232736 Gm7253 processed_pseudogene Interval_168018 chr9 75429158 75430043 + 0 NA Intergenic Intergenic -11924 ENSMUSG00000042487.6 ENSMUSG00000042487 ENSMUST00000213248 Leo1 protein_coding Interval_113484 chr4 55304703 55305248 + 0 NA Intergenic Intergenic -5130 ENSMUSG00000077403.2 ENSMUSG00000077403 ENSMUST00000104215 Gm25419 snoRNA Interval_83772 chr19 4573371 4573632 + 0 NA intron (ENSMUSG00000024892.17, intron 1 of 2) protein_coding-intron (ENSMUSG00000024892.17, intron 2 of 20) -20907 ENSMUSG00000024892.17 ENSMUSG00000024892 ENSMUST00000238089 Pcx protein_coding Interval_15430 chr10 46364309 46365230 + 0 NA Intergenic Intergenic -12840 ENSMUSG00000094681.1 ENSMUSG00000094681 ENSMUST00000180247 Gm25740 snRNA Interval_86984 chr19 45338856 45339511 + 0 NA promoter-TSS (ENSMUSG00000100417.2) lincRNA-promoter-TSS (ENSMUSG00000100417.2) 21290 ENSMUSG00000102057.1 ENSMUSG00000102057 ENSMUST00000191181 Gm29594 lincRNA Interval_59585 chr15 55599939 55600427 + 0 NA intron (ENSMUSG00000022369.13, intron 14 of 16) protein_coding-intron (ENSMUSG00000022369.13, intron 14 of 21) -17404 ENSMUSG00000022369.13 ENSMUSG00000022369 ENSMUST00000166449 Mtbp protein_coding Interval_30447 chr11 94410813 94411156 + 0 NA TTS (ENSMUSG00000020866.17) protein_coding-TTS (ENSMUSG00000020866.17) -18008 ENSMUSG00000020865.16 ENSMUSG00000020865 ENSMUST00000126566 Abcc3 protein_coding Interval_2170 chr1 36834145 36834429 + 0 NA intron (ENSMUSG00000026116.11, intron 11 of 41) protein_coding-intron (ENSMUSG00000026116.11, intron 10 of 40) 37758 ENSMUSG00000103016.1 ENSMUSG00000103016 ENSMUST00000192008 Gm37506 TEC Interval_1814 chr1 33966496 33966922 + 0 NA intron (ENSMUSG00000026131.20, intron 2 of 102) protein_coding-intron (ENSMUSG00000026131.20, intron 2 of 102) -3024 ENSMUSG00000099382.1 ENSMUSG00000099382 ENSMUST00000190740 Gm28631 processed_pseudogene Interval_51283 chr14 25734394 25735478 + 0 NA intron (ENSMUSG00000055538.7, intron 2 of 3) protein_coding-intron (ENSMUSG00000055538.7, intron 2 of 3) -15144 ENSMUSG00000055538.7 ENSMUSG00000055538 ENSMUST00000184642 Zcchc24 protein_coding Interval_34367 chr12 3642080 3642415 + 0 NA intron (ENSMUSG00000071454.13, intron 6 of 20) protein_coding-intron (ENSMUSG00000071454.13, intron 6 of 18) -56931 ENSMUSG00000077830.1 ENSMUSG00000077830 ENSMUST00000104640 Gm26050 miRNA Interval_79856 chr18 35593223 35593631 + 0 NA exon (ENSMUSG00000037236.16, exon 15 of 15) protein_coding-exon (ENSMUSG00000037236.16, exon 15 of 15) 5146 ENSMUSG00000118030.1 ENSMUSG00000118030 ENSMUST00000237282 Gm50163 antisense Interval_165042 chr9 44107062 44108497 + 0 NA exon (ENSMUSG00000034739.17, exon 13 of 14) protein_coding-exon (ENSMUSG00000034739.17, exon 13 of 14) 404 ENSMUSG00000079592.9 ENSMUSG00000079592 ENSMUST00000205500 C1qtnf5 protein_coding Interval_80799 chr18 47312075 47313341 + 0 NA intron (ENSMUSG00000019647.16, intron 1 of 16) protein_coding-intron (ENSMUSG00000019647.16, intron 1 of 18) 20640 ENSMUSG00000019647.16 ENSMUSG00000019647 ENSMUST00000144223 Sema6a protein_coding Interval_122045 chr5 14552321 14552790 + 0 NA intron (ENSMUSG00000061601.15, intron 3 of 22) protein_coding-intron (ENSMUSG00000061601.15, intron 3 of 24) -10783 ENSMUSG00000106491.1 ENSMUSG00000106491 ENSMUST00000199783 Gm42446 TEC Interval_172076 chrX 6261603 6261841 + 0 NA Intergenic Intergenic 58999 ENSMUSG00000023279.7 ENSMUSG00000023279 ENSMUST00000024049 Bmp15 protein_coding Interval_20655 chr10 120061068 120061909 + 0 NA intron (ENSMUSG00000034813.18, intron 13 of 14) protein_coding-intron (ENSMUSG00000034813.18, intron 21 of 22) 51377 ENSMUSG00000020228.11 ENSMUSG00000020228 ENSMUST00000154501 Helb protein_coding Interval_120230 chr4 144586575 144586864 + 0 NA promoter-TSS (ENSMUSG00000070610.4) processed_pseudogene-promoter-TSS (ENSMUSG00000070610.4) -525 ENSMUSG00000070610.4 ENSMUSG00000070610 ENSMUST00000118978 Gm13127 processed_pseudogene Interval_39382 chr12 87017053 87017482 + 0 NA Intergenic Intergenic -9349 ENSMUSG00000034145.14 ENSMUSG00000034145 ENSMUST00000131878 Tmem63c protein_coding Interval_57959 chr15 25745337 25746271 + 0 NA intron (ENSMUSG00000022272.17, intron 2 of 5) protein_coding-intron (ENSMUSG00000022272.17, intron 19 of 40) -22752 ENSMUSG00000022272.17 ENSMUSG00000022272 ENSMUST00000145587 Myo10 protein_coding Interval_132844 chr5 148277952 148279008 + 0 NA intron (ENSMUSG00000029651.16, intron 2 of 8) protein_coding-intron (ENSMUSG00000029651.16, intron 2 of 6) 42488 ENSMUSG00000029651.16 ENSMUSG00000029651 ENSMUST00000085554 Mtus2 protein_coding Interval_539 chr1 7088099 7089553 + 0 NA promoter-TSS (ENSMUSG00000051285.17) protein_coding-promoter-TSS (ENSMUSG00000051285.17) 47760 ENSMUSG00000098201.1 ENSMUSG00000098201 ENSMUST00000182051 Gm26983 processed_pseudogene Interval_67789 chr16 57197358 57197849 + 0 NA TTS (ENSMUSG00000022749.8) protein_coding-TTS (ENSMUSG00000022749.8) 3569 ENSMUSG00000022749.8 ENSMUSG00000022749 ENSMUST00000227359 Tbc1d23 protein_coding Interval_171003 chr9 113648668 113649540 + 0 NA Intergenic Intergenic -7050 ENSMUSG00000111364.1 ENSMUSG00000111364 ENSMUST00000213455 Gm36745 lincRNA Interval_49470 chr13 112271706 112272336 + 0 NA Intergenic Intergenic -16430 ENSMUSG00000049985.15 ENSMUSG00000049985 ENSMUST00000223871 Ankrd55 protein_coding Interval_70374 chr17 9286449 9287089 + 0 NA Intergenic Intergenic 34612 ENSMUSG00000097958.1 ENSMUSG00000097958 ENSMUST00000182375 Gm8492 processed_pseudogene Interval_171400 chr9 117499517 117499770 + 0 NA intron (ENSMUSG00000039607.17, intron 1 of 14) protein_coding-intron (ENSMUSG00000039607.17, intron 1 of 14) 96664 ENSMUSG00000092504.1 ENSMUSG00000092504 ENSMUST00000173358 Gm20396 processed_pseudogene Interval_139557 chr6 101025957 101026222 + 0 NA Intergenic Intergenic -1933 ENSMUSG00000107887.1 ENSMUSG00000107887 ENSMUST00000204767 Gm43950 lincRNA Interval_100128 chr2 167219316 167219773 + 0 NA intron (ENSMUSG00000017969.13, intron 5 of 9) protein_coding-intron (ENSMUSG00000017969.13, intron 5 of 9) -11128 ENSMUSG00000017969.13 ENSMUSG00000017969 ENSMUST00000136271 Ptgis protein_coding Interval_130076 chr5 124111721 124113259 + 0 NA promoter-TSS (ENSMUSG00000085433.2) lincRNA-promoter-TSS (ENSMUSG00000085433.2) 150 ENSMUSG00000023707.13 ENSMUSG00000023707 ENSMUST00000136955 Ogfod2 protein_coding Interval_72747 chr17 31902917 31903172 + 0 NA Intergenic Intergenic -3866 ENSMUSG00000117562.2 ENSMUSG00000117562 ENSMUST00000234078 Gm50000 lincRNA Interval_99572 chr2 163288579 163289613 + 0 NA intron (ENSMUSG00000074607.11, intron 3 of 8) protein_coding-intron (ENSMUSG00000074607.11, intron 3 of 8) 63642 ENSMUSG00000074607.11 ENSMUSG00000074607 ENSMUST00000148599 Tox2 protein_coding Interval_131456 chr5 137351930 137352928 + 0 NA intron (ENSMUSG00000029710.15, intron 2 of 17) protein_coding-intron (ENSMUSG00000029710.15, intron 1 of 16) 1999 ENSMUSG00000029710.15 ENSMUSG00000029710 ENSMUST00000111054 Ephb4 protein_coding Interval_12985 chr10 8895040 8895918 + 0 NA Intergenic Intergenic -8502 ENSMUSG00000111731.1 ENSMUSG00000111731 ENSMUST00000215873 Gm48727 lincRNA Interval_26769 chr11 60338086 60340126 + 0 NA intron (ENSMUSG00000000538.18, intron 1 of 8) protein_coding-intron (ENSMUSG00000000538.18, intron 1 of 12) -4139 ENSMUSG00000082148.1 ENSMUSG00000082148 ENSMUST00000120311 Gm12266 processed_pseudogene Interval_136884 chr6 62888895 62889803 + 0 NA Intergenic Intergenic -39797 ENSMUSG00000107854.1 ENSMUSG00000107854 ENSMUST00000204361 Gm5001 unprocessed_pseudogene Interval_13795 chr10 22579152 22579648 + 0 NA Intergenic Intergenic -69608 ENSMUSG00000037490.5 ENSMUSG00000037490 ENSMUST00000159174 Slc2a12 protein_coding Interval_106841 chr3 101251984 101252893 + 0 NA Intergenic Intergenic -8479 ENSMUSG00000081569.1 ENSMUSG00000081569 ENSMUST00000120255 Gm12490 processed_pseudogene Interval_21261 chr10 127537935 127538325 + 0 NA TTS (ENSMUSG00000040249.15) protein_coding-TTS (ENSMUSG00000040249.15) -3571 ENSMUSG00000040258.6 ENSMUSG00000040258 ENSMUST00000095266 Nxph4 protein_coding Interval_68584 chr16 79296510 79297471 + 0 NA Intergenic Intergenic -205893 ENSMUSG00000022857.13 ENSMUSG00000022857 ENSMUST00000060402 Tmprss15 protein_coding Interval_66219 chr16 32393621 32393910 + 0 NA TTS (ENSMUSG00000053774.9) protein_coding-TTS (ENSMUSG00000053774.9) -6741 ENSMUSG00000079625.2 ENSMUSG00000079625 ENSMUST00000115149 Tm4sf19 protein_coding Interval_45137 chr13 52589272 52590304 + 0 NA intron (ENSMUSG00000021457.14, intron 1 of 1) protein_coding-intron (ENSMUSG00000021457.14, intron 1 of 12) 6285 ENSMUSG00000021457.14 ENSMUSG00000021457 ENSMUST00000140339 Syk protein_coding Interval_161032 chr8 117053062 117053694 + 0 NA intron (ENSMUSG00000034416.18, intron 14 of 42) protein_coding-intron (ENSMUSG00000034416.18, intron 14 of 42) 16881 ENSMUSG00000085688.1 ENSMUSG00000085688 ENSMUST00000153724 Gm15395 antisense Interval_36696 chr12 52226995 52227376 + 0 NA intron (ENSMUSG00000035142.18, intron 3 of 3) protein_coding-intron (ENSMUSG00000035142.18, intron 6 of 10) 51098 ENSMUSG00000035142.18 ENSMUSG00000035142 ENSMUST00000162111 Nubpl protein_coding Interval_154396 chr8 15576660 15577189 + 0 NA Intergenic Intergenic -5019 ENSMUSG00000110392.1 ENSMUSG00000110392 ENSMUST00000211306 Gm45676 lincRNA Interval_170912 chr9 111989074 111989288 + 0 NA Intergenic Intergenic -70515 ENSMUSG00000111054.1 ENSMUSG00000111054 ENSMUST00000215688 4930545L08Rik lincRNA Interval_8929 chr1 152376285 152377064 + 0 NA intron (ENSMUSG00000014980.14, intron 2 of 2) protein_coding-intron (ENSMUSG00000014980.14, intron 3 of 4) 9946 ENSMUSG00000014980.14 ENSMUSG00000014980 ENSMUST00000188105 Tsen15 protein_coding Interval_85911 chr19 32955901 32959056 + 0 NA Intergenic Intergenic 12830 ENSMUSG00000084512.1 ENSMUSG00000084512 ENSMUST00000122563 Gm22482 misc_RNA Interval_44681 chr13 47124484 47125896 + 0 NA intron (ENSMUSG00000038068.15, intron 1 of 7) protein_coding-intron (ENSMUSG00000038068.15, intron 1 of 7) 18771 ENSMUSG00000114681.1 ENSMUSG00000114681 ENSMUST00000224610 1700026N04Rik bidirectional_promoter_lncRNA Interval_9305 chr1 156056860 156057531 + 0 NA intron (ENSMUSG00000050565.16, intron 3 of 6) protein_coding-intron (ENSMUSG00000050565.16, intron 1 of 4) 21423 ENSMUSG00000050565.16 ENSMUSG00000050565 ENSMUST00000125371 Tor1aip2 protein_coding Interval_46096 chr13 61665645 61666544 + 0 NA exon (ENSMUSG00000113728.1, exon 1 of 1) processed_pseudogene-exon (ENSMUSG00000113728.1, exon 1 of 1) 153 ENSMUSG00000113728.1 ENSMUSG00000113728 ENSMUST00000222707 Gm7622 processed_pseudogene Interval_152290 chr7 131432386 131433143 + 0 NA TTS (ENSMUSG00000030861.15) protein_coding-TTS (ENSMUSG00000030861.15) 2953 ENSMUSG00000030861.15 ENSMUSG00000030861 ENSMUST00000136612 Acadsb protein_coding Interval_21516 chr10 129071811 129072148 + 0 NA Intergenic Intergenic -3002 ENSMUSG00000107748.4 ENSMUSG00000107748 ENSMUST00000204515 Olfr766-ps1 protein_coding Interval_151553 chr7 123507684 123508456 + 0 NA Intergenic Intergenic -27141 ENSMUSG00000030757.13 ENSMUSG00000030757 ENSMUST00000128217 Zkscan2 protein_coding Interval_69242 chr16 91630371 91631731 + 0 NA exon (ENSMUSG00000022962.15, exon 12 of 22) protein_coding-exon (ENSMUSG00000022962.15, exon 12 of 22) -8034 ENSMUSG00000022962.15 ENSMUSG00000022962 ENSMUST00000231775 Gart protein_coding Interval_79264 chr18 28522404 28523026 + 0 NA Intergenic Intergenic 11655 ENSMUSG00000117348.1 ENSMUSG00000117348 ENSMUST00000234341 Gm34658 processed_pseudogene Interval_22354 chr11 9060187 9060470 + 0 NA intron (ENSMUSG00000040978.4, intron 5 of 6) protein_coding-intron (ENSMUSG00000040978.4, intron 5 of 6) -11337 ENSMUSG00000040985.13 ENSMUSG00000040985 ENSMUST00000102909 Sun3 protein_coding Interval_45504 chr13 55516894 55517199 + 0 NA Intergenic Intergenic -3608 ENSMUSG00000021493.15 ENSMUSG00000021493 ENSMUST00000153426 Pdlim7 protein_coding Interval_13485 chr10 18572732 18573306 + 0 NA Intergenic Intergenic -7064 ENSMUSG00000111173.1 ENSMUSG00000111173 ENSMUST00000215943 Gm48297 processed_pseudogene Interval_67924 chr16 59586069 59586639 + 0 NA intron (ENSMUSG00000022723.16, intron 1 of 21) protein_coding-intron (ENSMUSG00000022723.16, intron 1 of 21) 52775 ENSMUSG00000022722.18 ENSMUSG00000022722 ENSMUST00000149797 Arl6 protein_coding Interval_48569 chr13 100390570 100391286 + 0 NA Intergenic Intergenic -1804 ENSMUSG00000112978.1 ENSMUSG00000112978 ENSMUST00000220831 Gm18601 processed_pseudogene Interval_151341 chr7 121231578 121232578 + 0 NA Intergenic Intergenic -8084 ENSMUSG00000108502.1 ENSMUSG00000108502 ENSMUST00000206527 Gm9240 processed_pseudogene Interval_116360 chr4 110211351 110211551 + 0 NA exon (ENSMUSG00000028546.17, exon 5 of 7) protein_coding-exon (ENSMUSG00000028546.17, exon 5 of 7) 76076 ENSMUSG00000028546.17 ENSMUSG00000028546 ENSMUST00000142722 Elavl4 protein_coding Interval_149176 chr7 95974022 95974261 + 0 NA Intergenic Intergenic -60755 ENSMUSG00000108628.1 ENSMUSG00000108628 ENSMUST00000205327 Gm5037 processed_pseudogene Interval_116421 chr4 111693132 111693914 + 0 NA Intergenic Intergenic -26540 ENSMUSG00000034401.16 ENSMUSG00000034401 ENSMUST00000132802 Spata6 protein_coding Interval_8291 chr1 136963107 136963357 + 0 NA Intergenic Intergenic -14059 ENSMUSG00000026398.14 ENSMUSG00000026398 ENSMUST00000195428 Nr5a2 protein_coding Interval_123002 chr5 28329161 28330170 + 0 NA intron (ENSMUSG00000048271.14, intron 1 of 17) protein_coding-intron (ENSMUSG00000048271.14, intron 1 of 6) -64390 ENSMUSG00000048271.14 ENSMUSG00000048271 ENSMUST00000133313 Rbm33 protein_coding Interval_1935 chr1 34700264 34701117 + 0 NA intron (ENSMUSG00000037509.21, intron 1 of 13) protein_coding-intron (ENSMUSG00000037509.21, intron 1 of 13) -52085 ENSMUSG00000102537.1 ENSMUSG00000102537 ENSMUST00000192878 Gm37224 processed_pseudogene Interval_100503 chr2 169713892 169714629 + 0 NA intron (ENSMUSG00000047907.11, intron 1 of 2) protein_coding-intron (ENSMUSG00000047907.11, intron 1 of 1) -85942 ENSMUSG00000103662.1 ENSMUSG00000103662 ENSMUST00000191912 Gm34294 TEC Interval_64319 chr16 10458428 10458728 + 0 NA Intergenic Intergenic -11251 ENSMUSG00000050908.12 ENSMUSG00000050908 ENSMUST00000141587 Tvp23a protein_coding Interval_57602 chr15 12728449 12728674 + 0 NA intron (ENSMUSG00000022197.16, intron 1 of 4) protein_coding-intron (ENSMUSG00000022197.16, intron 1 of 4) 28903 ENSMUSG00000115201.1 ENSMUSG00000115201 ENSMUST00000227559 Gm49276 processed_pseudogene Interval_32582 chr11 108888189 108889847 + 0 NA Intergenic Intergenic -32318 ENSMUSG00000000142.15 ENSMUSG00000000142 ENSMUST00000139682 Axin2 protein_coding Interval_107542 chr3 108388940 108389726 + 0 NA Intergenic Intergenic 4479 ENSMUSG00000068744.12 ENSMUSG00000068744 ENSMUST00000128962 Psrc1 protein_coding Interval_155372 chr8 32806011 32806699 + 0 NA intron (ENSMUSG00000062991.9, intron 1 of 12) protein_coding-intron (ENSMUSG00000062991.9, intron 1 of 8) 136127 ENSMUSG00000079070.10 ENSMUSG00000079070 ENSMUST00000180220 Gm3985 lincRNA Interval_133848 chr6 13330738 13331885 + 0 NA Intergenic Intergenic 67566 ENSMUSG00000118525.1 ENSMUSG00000118525 ENSMUST00000238854 AC121573.1 processed_pseudogene Interval_51647 chr14 31070616 31071022 + 0 NA intron (ENSMUSG00000042323.17, intron 16 of 27) protein_coding-intron (ENSMUSG00000042323.17, intron 16 of 27) 6616 ENSMUSG00000090305.2 ENSMUSG00000090305 ENSMUST00000171235 Gm5459 processed_pseudogene Interval_159879 chr8 104577554 104578162 + 0 NA Intergenic Intergenic -13593 ENSMUSG00000048371.8 ENSMUSG00000048371 ENSMUST00000059588 Pdp2 protein_coding Interval_49627 chr13 113635742 113636589 + 0 NA Intergenic Intergenic -22151 ENSMUSG00000042364.11 ENSMUSG00000042364 ENSMUST00000224883 Snx18 protein_coding Interval_34179 chr11 121131951 121132455 + 0 NA Intergenic Intergenic -13526 ENSMUSG00000039337.3 ENSMUSG00000039337 ENSMUST00000039146 Tex19.2 protein_coding Interval_19308 chr10 96516663 96516892 + 0 NA intron (ENSMUSG00000112264.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000112264.1, intron 1 of 1) 7205 ENSMUSG00000112264.1 ENSMUSG00000112264 ENSMUST00000219016 Gm48505 lincRNA Interval_68403 chr16 75941731 75943125 + 0 NA intron (ENSMUSG00000022876.18, intron 3 of 9) protein_coding-intron (ENSMUSG00000022876.18, intron 7 of 13) -58356 ENSMUSG00000087214.2 ENSMUSG00000087214 ENSMUST00000128832 Gm15555 antisense Interval_150709 chr7 113650090 113651121 + 0 NA Intergenic Intergenic 16411 ENSMUSG00000089467.1 ENSMUSG00000089467 ENSMUST00000158842 Gm23700 miRNA Interval_59931 chr15 62049280 62049854 + 0 NA intron (ENSMUSG00000097039.8, intron 1 of 6) lincRNA-intron (ENSMUSG00000097039.8, intron 1 of 8) 10310 ENSMUSG00000097039.8 ENSMUSG00000097039 ENSMUST00000182141 Pvt1 lincRNA Interval_144431 chr7 25109654 25110386 + 0 NA intron (ENSMUSG00000008496.19, intron 4 of 12) protein_coding-intron (ENSMUSG00000008496.19, intron 5 of 13) -12845 ENSMUSG00000098441.1 ENSMUSG00000098441 ENSMUST00000184150 Mir6537 miRNA Interval_115426 chr4 98856584 98858394 + 0 NA Intergenic Intergenic 1875 ENSMUSG00000084188.1 ENSMUSG00000084188 ENSMUST00000117920 Gm12851 processed_pseudogene Interval_156319 chr8 47352074 47353356 + 0 NA promoter-TSS (ENSMUSG00000038143.16) protein_coding-promoter-TSS (ENSMUSG00000038143.16) 61122 ENSMUSG00000038143.16 ENSMUSG00000038143 ENSMUST00000181417 Stox2 protein_coding Interval_20465 chr10 117768182 117768413 + 0 NA intron (ENSMUSG00000052798.13, intron 17 of 27) protein_coding-intron (ENSMUSG00000052798.13, intron 17 of 27) -23355 ENSMUSG00000060181.6 ENSMUSG00000060181 ENSMUST00000219482 Slc35e3 protein_coding Interval_46136 chr13 61946037 61947059 + 0 NA Intergenic Intergenic 28999 ENSMUSG00000113887.1 ENSMUSG00000113887 ENSMUST00000222548 Gm35619 processed_pseudogene Interval_22803 chr11 16031236 16031629 + 0 NA Intergenic Intergenic -6361 ENSMUSG00000104323.1 ENSMUSG00000104323 ENSMUST00000193500 Gm37319 TEC Interval_37886 chr12 72792797 72793037 + 0 NA TTS (ENSMUSG00000021096.11) protein_coding-TTS (ENSMUSG00000021096.11) -24795 ENSMUSG00000113779.1 ENSMUSG00000113779 ENSMUST00000222961 Gm33785 lincRNA Interval_29213 chr11 81588228 81589092 + 0 NA intron (ENSMUSG00000087534.1, intron 1 of 3) protein_coding-intron (ENSMUSG00000020704.13, intron 1 of 9) 1299 ENSMUSG00000087534.1 ENSMUSG00000087534 ENSMUST00000156193 Gm11418 antisense Interval_144554 chr7 25854561 25856019 + 0 NA Intergenic Intergenic -4850 ENSMUSG00000108415.1 ENSMUSG00000108415 ENSMUST00000206564 Gm30146 lincRNA Interval_167829 chr9 72924735 72926131 + 0 NA promoter-TSS (ENSMUSG00000034910.5) protein_coding-promoter-TSS (ENSMUSG00000034910.5) -212 ENSMUSG00000034910.5 ENSMUSG00000034910 ENSMUST00000038489 Pygo1 protein_coding Interval_94897 chr2 101385942 101386159 + 0 NA Intergenic Intergenic -184574 ENSMUSG00000093614.1 ENSMUSG00000093614 ENSMUST00000177431 Gm20693 processed_pseudogene Interval_71868 chr17 26620583 26620990 + 0 NA promoter-TSS (ENSMUSG00000001576.15) protein_coding-promoter-TSS (ENSMUSG00000001576.15) 4314 ENSMUSG00000091078.1 ENSMUSG00000091078 ENSMUST00000165911 Gm17218 antisense Interval_60385 chr15 73422467 73423801 + 0 NA promoter-TSS (ENSMUSG00000022607.18) protein_coding-promoter-TSS (ENSMUSG00000022607.18) 57 ENSMUSG00000022607.18 ENSMUSG00000022607 ENSMUST00000227435 Ptk2 protein_coding Interval_4128 chr1 69826466 69827520 + 0 NA promoter-TSS (ENSMUSG00000053153.14) protein_coding-promoter-TSS (ENSMUSG00000053153.14) 56125 ENSMUSG00000103402.1 ENSMUSG00000103402 ENSMUST00000194308 Gm37930 TEC Interval_100443 chr2 169045414 169045817 + 0 NA Intergenic Intergenic -15505 ENSMUSG00000080415.1 ENSMUSG00000080415 ENSMUST00000116765 Gm26469 miRNA Interval_25220 chr11 45533437 45534128 + 0 NA Intergenic Intergenic -105601 ENSMUSG00000077320.1 ENSMUSG00000077320 ENSMUST00000104132 Gm22284 snoRNA Interval_121570 chr5 3521116 3522794 + 0 NA exon (ENSMUSG00000040274.11, exon 7 of 7) protein_coding-exon (ENSMUSG00000040274.11, exon 7 of 7) -21883 ENSMUSG00000105534.1 ENSMUSG00000105534 ENSMUST00000196630 Gm42435 antisense Interval_27723 chr11 69686241 69686446 + 0 NA promoter-TSS (ENSMUSG00000089669.7) protein_coding-promoter-TSS (ENSMUSG00000089669.7) -559 ENSMUSG00000089669.7 ENSMUSG00000089669 ENSMUST00000108648 Tnfsf13 protein_coding Interval_166096 chr9 56583756 56584092 + 0 NA Intergenic Intergenic -22769 ENSMUSG00000097870.2 ENSMUSG00000097870 ENSMUST00000181927 Gm26868 lincRNA Interval_46907 chr13 73327770 73329085 + 0 NA promoter-TSS (ENSMUSG00000021606.8) protein_coding-promoter-TSS (ENSMUSG00000021606.8) 35 ENSMUSG00000021606.8 ENSMUSG00000021606 ENSMUST00000147407 Ndufs6 protein_coding Interval_126948 chr5 98167027 98168211 + 0 NA intron (ENSMUSG00000035456.9, intron 1 of 4) protein_coding-intron (ENSMUSG00000035456.9, intron 1 of 4) 421 ENSMUSG00000035456.9 ENSMUSG00000035456 ENSMUST00000112959 Prdm8 protein_coding Interval_58225 chr15 31193997 31194564 + 0 NA promoter-TSS (ENSMUSG00000077468.1) snoRNA-promoter-TSS (ENSMUSG00000077468.1) 58 ENSMUSG00000077468.1 ENSMUSG00000077468 ENSMUST00000104280 Gm26416 snoRNA Interval_37421 chr12 68137362 68137651 + 0 NA Intergenic Intergenic 47099 ENSMUSG00000113674.1 ENSMUSG00000113674 ENSMUST00000222955 Hspe1-ps1 processed_pseudogene Interval_34804 chr12 11350586 11351334 + 0 NA intron (ENSMUSG00000054459.8, intron 2 of 3) protein_coding-intron (ENSMUSG00000054459.8, intron 2 of 3) 51073 ENSMUSG00000098879.1 ENSMUSG00000098879 ENSMUST00000184262 Mir7675 miRNA Interval_115863 chr4 105299136 105300091 + 0 NA Intergenic Intergenic 75333 ENSMUSG00000081819.1 ENSMUSG00000081819 ENSMUST00000118507 Gm12722 processed_pseudogene Interval_5489 chr1 89192685 89193093 + 0 NA Intergenic Intergenic 64092 ENSMUSG00000102083.1 ENSMUSG00000102083 ENSMUST00000191231 Gm5259 processed_pseudogene Interval_14483 chr10 34229115 34230571 + 0 NA Intergenic Intergenic 3688 ENSMUSG00000111149.1 ENSMUSG00000111149 ENSMUST00000216701 Gm26564 lincRNA Interval_45414 chr13 54996328 54998060 + 0 NA exon (ENSMUSG00000025876.15, exon 6 of 16) protein_coding-exon (ENSMUSG00000025876.15, exon 6 of 16) -5816 ENSMUSG00000025876.15 ENSMUSG00000025876 ENSMUST00000137967 Unc5a protein_coding Interval_32053 chr11 104786837 104787111 + 0 NA intron (ENSMUSG00000040838.10, intron 37 of 187) protein_coding-intron (ENSMUSG00000040838.10, intron 37 of 187) -27442 ENSMUSG00000081513.1 ENSMUSG00000081513 ENSMUST00000120176 Gm11623 processed_pseudogene Interval_45112 chr13 52324647 52326380 + 0 NA Intergenic Intergenic 145102 ENSMUSG00000113399.1 ENSMUSG00000113399 ENSMUST00000222876 Gm48199 lincRNA Interval_162847 chr9 10324582 10325220 + 0 NA intron (ENSMUSG00000039488.15, intron 3 of 24) protein_coding-intron (ENSMUSG00000039488.15, intron 1 of 22) -29745 ENSMUSG00000096815.1 ENSMUSG00000096815 ENSMUST00000179931 Gm25086 miRNA Interval_161699 chr8 122139679 122140234 + 0 NA intron (ENSMUSG00000092329.1, intron 1 of 15) protein_coding-intron (ENSMUSG00000092329.1, intron 1 of 15) -118664 ENSMUSG00000043903.4 ENSMUSG00000043903 ENSMUST00000055537 Zfp469 protein_coding Interval_116283 chr4 109253546 109254002 + 0 NA TTS (ENSMUSG00000028558.14) protein_coding-TTS (ENSMUSG00000028558.14) 9192 ENSMUSG00000028558.14 ENSMUSG00000028558 ENSMUST00000141555 Calr4 protein_coding Interval_7162 chr1 127338801 127339043 + 0 NA intron (ENSMUSG00000036155.13, intron 4 of 10) protein_coding-intron (ENSMUSG00000036155.13, intron 4 of 17) 7109 ENSMUSG00000106489.1 ENSMUSG00000106489 ENSMUST00000197008 Gm23370 scaRNA Interval_96545 chr2 125568883 125569103 + 0 NA intron (ENSMUSG00000068394.4, intron 24 of 27) protein_coding-intron (ENSMUSG00000068394.4, intron 24 of 27) 56120 ENSMUSG00000068394.4 ENSMUSG00000068394 ENSMUST00000089776 Cep152 protein_coding Interval_94331 chr2 89322247 89322602 + 0 NA Intergenic Intergenic 7251 ENSMUSG00000075092.2 ENSMUSG00000075092 ENSMUST00000099785 Olfr1232 protein_coding Interval_173817 chrX 104956014 104956242 + 0 NA Intergenic Intergenic 8343 ENSMUSG00000081703.1 ENSMUSG00000081703 ENSMUST00000122012 Gm6285 processed_pseudogene Interval_69052 chr16 90317562 90318024 + 0 NA intron (ENSMUSG00000116600.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000116600.1, intron 1 of 1) 2921 ENSMUSG00000116600.1 ENSMUSG00000116600 ENSMUST00000232142 Gm49707 lincRNA Interval_14476 chr10 34185563 34186638 + 0 NA intron (ENSMUSG00000039497.8, intron 1 of 2) protein_coding-intron (ENSMUSG00000039497.8, intron 1 of 5) -6172 ENSMUSG00000111361.1 ENSMUSG00000111361 ENSMUST00000213617 Gm47445 TEC Interval_52504 chr14 47143478 47144502 + 0 NA Intergenic Intergenic 17882 ENSMUSG00000037580.10 ENSMUSG00000037580 ENSMUST00000227883 Gch1 protein_coding Interval_120269 chr4 145066854 145067203 + 0 NA intron (ENSMUSG00000020220.16, intron 39 of 51) protein_coding-intron (ENSMUSG00000020220.16, intron 55 of 67) 88458 ENSMUSG00000020220.16 ENSMUSG00000020220 ENSMUST00000132700 Vps13d protein_coding Interval_56120 chr14 106014645 106014983 + 0 NA Intergenic Intergenic 78668 ENSMUSG00000115800.1 ENSMUSG00000115800 ENSMUST00000226185 Frg2f4 processed_pseudogene Interval_95810 chr2 116813022 116813216 + 0 NA Intergenic Intergenic 64049 ENSMUSG00000086462.1 ENSMUSG00000086462 ENSMUST00000151391 Gm13990 antisense Interval_57737 chr15 17885617 17886013 + 0 NA Intergenic Intergenic 11882 ENSMUSG00000115173.1 ENSMUSG00000115173 ENSMUST00000228569 Gm2638 processed_pseudogene Interval_13548 chr10 19380630 19380833 + 0 NA Intergenic Intergenic 24198 ENSMUSG00000045591.6 ENSMUSG00000045591 ENSMUST00000053225 Olig3 protein_coding Interval_165020 chr9 43972223 43972720 + 0 NA Intergenic Intergenic -2300 ENSMUSG00000111758.1 ENSMUSG00000111758 ENSMUST00000217507 Gm30373 lincRNA Interval_136792 chr6 60363321 60364922 + 0 NA intron (ENSMUSG00000046764.8, intron 1 of 1) processed_transcript-intron (ENSMUSG00000046764.8, intron 1 of 1) 39586 ENSMUSG00000046764.8 ENSMUSG00000046764 ENSMUST00000203367 A530053G22Rik processed_transcript Interval_73538 chr17 39991705 39993095 + 0 NA Intergenic Intergenic 41880 ENSMUSG00000095886.2 ENSMUSG00000095886 ENSMUST00000178880 Esp38 protein_coding Interval_81847 chr18 65265625 65267238 + 0 NA intron (ENSMUSG00000032845.16, intron 6 of 6) protein_coding-intron (ENSMUSG00000032845.16, intron 12 of 12) 17570 ENSMUSG00000065402.1 ENSMUSG00000065402 ENSMUST00000083468 Mir122 miRNA Interval_79419 chr18 31766851 31768236 + 0 NA intron (ENSMUSG00000041915.9, intron 2 of 5) protein_coding-intron (ENSMUSG00000041915.9, intron 2 of 7) 7717 ENSMUSG00000041915.9 ENSMUSG00000041915 ENSMUST00000234191 Ammecr1l protein_coding Interval_63066 chr15 98923581 98923760 + 0 NA Intergenic Intergenic 10768 ENSMUSG00000023004.8 ENSMUSG00000023004 ENSMUST00000140969 Tuba1b protein_coding Interval_128510 chr5 113734547 113736193 + 0 NA promoter-TSS (ENSMUSG00000053334.6) protein_coding-promoter-TSS (ENSMUSG00000053334.6) -433 ENSMUSG00000053334.6 ENSMUSG00000053334 ENSMUST00000065698 Ficd protein_coding Interval_148120 chr7 79349533 79350411 + 0 NA intron (ENSMUSG00000039202.12, intron 6 of 10) protein_coding-intron (ENSMUSG00000039202.12, intron 6 of 10) 2773 ENSMUSG00000089453.1 ENSMUSG00000089453 ENSMUST00000158828 Gm24224 misc_RNA Interval_43434 chr13 30913156 30913345 + 0 NA intron (ENSMUSG00000021357.14, intron 1 of 4) protein_coding-intron (ENSMUSG00000021357.14, intron 6 of 27) 34509 ENSMUSG00000076430.1 ENSMUSG00000076430 ENSMUST00000102943 Hus1b protein_coding Interval_35416 chr12 21451694 21452822 + 0 NA Intergenic Intergenic 34379 ENSMUSG00000097055.2 ENSMUSG00000097055 ENSMUST00000227598 Gm4419 antisense Interval_149075 chr7 92903373 92904359 + 0 NA TTS (ENSMUSG00000109268.1) TEC-TTS (ENSMUSG00000109268.1) 1687 ENSMUSG00000109268.1 ENSMUSG00000109268 ENSMUST00000208883 9530078K11Rik TEC Interval_158438 chr8 83729283 83729620 + 0 NA exon (ENSMUSG00000002885.14, exon 5 of 18) protein_coding-exon (ENSMUSG00000002885.14, exon 5 of 18) -5467 ENSMUSG00000098465.1 ENSMUSG00000098465 ENSMUST00000184114 Mir1668 miRNA Interval_170820 chr9 110979675 110979916 + 0 NA TTS (ENSMUSG00000032495.8) protein_coding-TTS (ENSMUSG00000032495.8) 5363 ENSMUSG00000106234.1 ENSMUSG00000106234 ENSMUST00000197846 Gm43535 TEC Interval_51063 chr14 21902565 21902777 + 0 NA Intergenic Intergenic -12905 ENSMUSG00000114352.1 ENSMUSG00000114352 ENSMUST00000224374 4931407E12Rik lincRNA Interval_26334 chr11 56418176 56418439 + 0 NA Intergenic Intergenic -41042 ENSMUSG00000081749.3 ENSMUSG00000081749 ENSMUST00000118330 Gm12241 processed_pseudogene Interval_130985 chr5 134409529 134411057 + 0 NA TTS (ENSMUSG00000023079.14) protein_coding-TTS (ENSMUSG00000023079.14) -5946 ENSMUSG00000077437.1 ENSMUSG00000077437 ENSMUST00000104249 n-R5s178 rRNA Interval_74748 chr17 56298018 56298659 + 0 NA intron (ENSMUSG00000073380.2, intron 1 of 2) protein_coding-intron (ENSMUSG00000073380.2, intron 1 of 2) 1928 ENSMUSG00000073380.2 ENSMUSG00000073380 ENSMUST00000233911 Arrdc5 protein_coding Interval_128799 chr5 115326419 115328307 + 0 NA promoter-TSS (ENSMUSG00000029538.14) protein_coding-promoter-TSS (ENSMUSG00000029538.14) -32 ENSMUSG00000029538.14 ENSMUSG00000029538 ENSMUST00000149510 Srsf9 protein_coding Interval_91450 chr2 38951539 38951905 + 0 NA intron (ENSMUSG00000046618.7, intron 5 of 7) protein_coding-intron (ENSMUSG00000046618.7, intron 5 of 7) 12379 ENSMUSG00000083776.1 ENSMUSG00000083776 ENSMUST00000119289 Gm13473 processed_pseudogene Interval_94672 chr2 93192541 93192878 + 0 NA intron (ENSMUSG00000068735.14, intron 2 of 6) protein_coding-intron (ENSMUSG00000068735.14, intron 1 of 7) 5161 ENSMUSG00000068735.14 ENSMUSG00000068735 ENSMUST00000143164 Trp53i11 protein_coding Interval_174852 chrX 169881082 169881255 + 0 NA intron (ENSMUSG00000035299.16, intron 1 of 9) protein_coding-intron (ENSMUSG00000035299.16, intron 1 of 9) -45783 ENSMUSG00000035299.16 ENSMUSG00000035299 ENSMUST00000079443 Mid1 protein_coding Interval_95444 chr2 109415088 109415867 + 0 NA Intergenic Intergenic 43256 ENSMUSG00000084167.1 ENSMUSG00000084167 ENSMUST00000119899 Gm13924 processed_pseudogene Interval_107723 chr3 112004677 112004891 + 0 NA intron (ENSMUSG00000104543.1, intron 2 of 3) lincRNA-intron (ENSMUSG00000104543.1, intron 2 of 3) 122881 ENSMUSG00000104543.1 ENSMUSG00000104543 ENSMUST00000198910 Gm6602 lincRNA Interval_127800 chr5 107908481 107910428 + 0 NA TTS (ENSMUSG00000058558.12) protein_coding-TTS (ENSMUSG00000058558.12) 2109 ENSMUSG00000077426.1 ENSMUSG00000077426 ENSMUST00000104238 Gm26387 snoRNA Interval_109140 chr3 136681492 136681711 + 0 NA intron (ENSMUSG00000028161.17, intron 1 of 12) protein_coding-intron (ENSMUSG00000028161.17, intron 1 of 13) -19610 ENSMUSG00000106596.1 ENSMUSG00000106596 ENSMUST00000200507 Gm42822 TEC Interval_106273 chr3 95052383 95054960 + 0 NA Intergenic Intergenic -19755 ENSMUSG00000005625.15 ENSMUSG00000005625 ENSMUST00000143688 Psmd4 protein_coding Interval_116701 chr4 116725273 116726719 + 0 NA promoter-TSS (ENSMUSG00000098491.1) misc_RNA-promoter-TSS (ENSMUSG00000098491.1) 97 ENSMUSG00000098491.1 ENSMUSG00000098491 ENSMUST00000183634 Gm27688 misc_RNA Interval_142388 chr6 141337822 141338463 + 0 NA intron (ENSMUSG00000041741.10, intron 1 of 5) protein_coding-intron (ENSMUSG00000041741.10, intron 1 of 15) -2411 ENSMUSG00000107456.1 ENSMUSG00000107456 ENSMUST00000203920 Gm10400 TEC Interval_47019 chr13 74398984 74400071 + 0 NA promoter-TSS (ENSMUSG00000062382.9) protein_coding-promoter-TSS (ENSMUSG00000062382.9) -6882 ENSMUSG00000062382.9 ENSMUSG00000062382 ENSMUST00000222435 Ftl1-ps1 protein_coding Interval_33226 chr11 115344448 115345271 + 0 NA exon (ENSMUSG00000018862.11, exon 6 of 7) protein_coding-exon (ENSMUSG00000018862.11, exon 6 of 7) 10128 ENSMUSG00000018862.11 ENSMUSG00000018862 ENSMUST00000019006 Otop3 protein_coding Interval_19965 chr10 111545931 111546143 + 0 NA Intergenic Intergenic 38341 ENSMUSG00000020205.8 ENSMUSG00000020205 ENSMUST00000186359 Phlda1 protein_coding Interval_3247 chr1 55157892 55158221 + 0 NA Intergenic Intergenic 2997 ENSMUSG00000061863.6 ENSMUSG00000061863 ENSMUST00000161440 Gm6822 processed_pseudogene Interval_15916 chr10 59270096 59270540 + 0 NA Intergenic Intergenic 48365 ENSMUSG00000098188.1 ENSMUSG00000098188 ENSMUST00000182161 Sowahc protein_coding Interval_47124 chr13 75993899 75994172 + 0 NA intron (ENSMUSG00000021590.7, intron 4 of 4) protein_coding-intron (ENSMUSG00000021590.7, intron 4 of 4) 24433 ENSMUSG00000043190.14 ENSMUSG00000043190 ENSMUST00000224093 Rfesd protein_coding Interval_21769 chr11 4245894 4248173 + 0 NA Intergenic Intergenic 10613 ENSMUSG00000058755.3 ENSMUSG00000058755 ENSMUST00000075221 Osm protein_coding Interval_20673 chr10 120160362 120163536 + 0 NA intron (ENSMUSG00000020227.10, intron 3 of 3) protein_coding-intron (ENSMUSG00000020227.10, intron 8 of 11) -6700 ENSMUSG00000112894.1 ENSMUSG00000112894 ENSMUST00000220425 Gm47009 antisense Interval_69711 chr16 95727098 95727344 + 0 NA Intergenic Intergenic 24766 ENSMUSG00000022895.16 ENSMUSG00000022895 ENSMUST00000233578 Ets2 protein_coding Interval_153881 chr8 10574208 10574528 + 0 NA intron (ENSMUSG00000039057.11, intron 32 of 34) protein_coding-intron (ENSMUSG00000039057.11, intron 32 of 34) 102545 ENSMUSG00000109258.1 ENSMUSG00000109258 ENSMUST00000208649 5330413D20Rik lincRNA Interval_97988 chr2 146461719 146462411 + 0 NA intron (ENSMUSG00000037110.20, intron 3 of 41) protein_coding-intron (ENSMUSG00000037110.20, intron 3 of 15) 50279 ENSMUSG00000037110.20 ENSMUSG00000037110 ENSMUST00000124709 Ralgapa2 protein_coding Interval_65003 chr16 17796881 17798710 + 0 NA intron (ENSMUSG00000012017.4, intron 1 of 9) protein_coding-intron (ENSMUSG00000012017.4, intron 1 of 10) 480 ENSMUSG00000012017.4 ENSMUSG00000012017 ENSMUST00000231301 Scarf2 protein_coding Interval_61713 chr15 83532084 83533241 + 0 NA promoter-TSS (ENSMUSG00000016758.4) protein_coding-promoter-TSS (ENSMUSG00000016758.4) 5790 ENSMUSG00000016758.4 ENSMUSG00000016758 ENSMUST00000229964 Bik protein_coding Interval_50663 chr14 17748062 17749521 + 0 NA intron (ENSMUSG00000021779.17, intron 1 of 1) protein_coding-intron (ENSMUSG00000021779.17, intron 1 of 9) 22331 ENSMUSG00000114281.1 ENSMUSG00000114281 ENSMUST00000225878 Gm48320 processed_pseudogene Interval_41234 chr12 112024303 112025403 + 0 NA intron (ENSMUSG00000054003.13, intron 5 of 5) protein_coding-intron (ENSMUSG00000054003.13, intron 15 of 35) 11787 ENSMUSG00000054003.13 ENSMUSG00000054003 ENSMUST00000193630 Tdrd9 protein_coding Interval_2306 chr1 37933631 37934810 + 0 NA intron (ENSMUSG00000087374.1, intron 1 of 5) antisense-intron (ENSMUSG00000087374.1, intron 1 of 5) 624 ENSMUSG00000087374.1 ENSMUSG00000087374 ENSMUST00000129513 Gm15457 antisense Interval_47851 chr13 93793185 93793462 + 0 NA intron (ENSMUSG00000042082.7, intron 2 of 5) protein_coding-intron (ENSMUSG00000042082.7, intron 2 of 7) 2546 ENSMUSG00000093480.1 ENSMUSG00000093480 ENSMUST00000176635 Mir5624 miRNA Interval_132624 chr5 146806677 146807508 + 0 NA TTS (ENSMUSG00000104845.1) lincRNA-TTS (ENSMUSG00000104845.1) 11174 ENSMUSG00000104845.1 ENSMUSG00000104845 ENSMUST00000197536 1700041I07Rik lincRNA Interval_34674 chr12 8544814 8545746 + 0 NA intron (ENSMUSG00000020600.13, intron 2 of 6) protein_coding-intron (ENSMUSG00000020600.13, intron 2 of 6) -5735 ENSMUSG00000020600.13 ENSMUSG00000020600 ENSMUST00000129465 Slc7a15 protein_coding Interval_104306 chr3 63171808 63171999 + 0 NA Intergenic Intergenic 1958 ENSMUSG00000102270.1 ENSMUSG00000102270 ENSMUST00000193000 Gm8388 processed_pseudogene Interval_76376 chr17 79715101 79716280 + 0 NA promoter-TSS (ENSMUSG00000024087.4) protein_coding-promoter-TSS (ENSMUSG00000024087.4) -2035 ENSMUSG00000024087.4 ENSMUSG00000024087 ENSMUST00000024894 Cyp1b1 protein_coding Interval_48576 chr13 100419803 100420224 + 0 NA intron (ENSMUSG00000021640.6, intron 12 of 15) protein_coding-intron (ENSMUSG00000021640.6, intron 11 of 14) 4448 ENSMUSG00000051723.7 ENSMUSG00000051723 ENSMUST00000060994 Rpl31-ps13 processed_pseudogene Interval_94895 chr2 101159247 101159489 + 0 NA Intergenic Intergenic -411256 ENSMUSG00000093614.1 ENSMUSG00000093614 ENSMUST00000177431 Gm20693 processed_pseudogene Interval_14620 chr10 37112510 37113489 + 0 NA Intergenic Intergenic -16745 ENSMUSG00000103299.1 ENSMUSG00000103299 ENSMUST00000192030 Gm38231 TEC Interval_154422 chr8 16151070 16151301 + 0 NA intron (ENSMUSG00000060924.15, intron 25 of 33) protein_coding-intron (ENSMUSG00000060924.15, intron 25 of 69) 17653 ENSMUSG00000093142.1 ENSMUSG00000093142 ENSMUST00000175401 Mir3106 miRNA Interval_120334 chr4 147959795 147960713 + 0 NA Intergenic Intergenic 19359 ENSMUSG00000044496.6 ENSMUSG00000044496 ENSMUST00000103232 2510039O18Rik protein_coding Interval_56825 chr14 122290539 122291156 + 0 NA intron (ENSMUSG00000025545.10, intron 1 of 7) protein_coding-intron (ENSMUSG00000025545.10, intron 1 of 7) 32806 ENSMUSG00000025545.10 ENSMUSG00000025545 ENSMUST00000226136 Clybl protein_coding Interval_61332 chr15 80906818 80907698 + 0 NA intron (ENSMUSG00000047888.10, intron 9 of 16) protein_coding-intron (ENSMUSG00000047888.10, intron 17 of 24) -15806 ENSMUSG00000047888.10 ENSMUSG00000047888 ENSMUST00000228525 Tnrc6b protein_coding Interval_111369 chr4 19895590 19895926 + 0 NA intron (ENSMUSG00000028238.6, intron 2 of 2) protein_coding-intron (ENSMUSG00000028238.6, intron 2 of 7) 21182 ENSMUSG00000028238.6 ENSMUSG00000028238 ENSMUST00000128605 Atp6v0d2 protein_coding Interval_164257 chr9 34560846 34562023 + 0 NA intron (ENSMUSG00000032036.15, intron 1 of 15) protein_coding-intron (ENSMUSG00000032036.15, intron 1 of 16) 39679 ENSMUSG00000103552.1 ENSMUSG00000103552 ENSMUST00000194358 Gm38217 TEC Interval_147061 chr7 60390748 60391790 + 0 NA Intergenic Intergenic 98065 ENSMUSG00000109220.1 ENSMUSG00000109220 ENSMUST00000208957 Gm30196 processed_pseudogene Interval_138559 chr6 89304543 89304865 + 0 NA promoter-TSS (ENSMUSG00000097816.1) antisense-promoter-TSS (ENSMUSG00000097816.1) 74 ENSMUSG00000097816.1 ENSMUSG00000097816 ENSMUST00000181258 Gm26811 antisense Interval_66757 chr16 37074885 37075084 + 0 NA intron (ENSMUSG00000034206.15, intron 16 of 25) protein_coding-intron (ENSMUSG00000034206.15, intron 20 of 29) 63198 ENSMUSG00000034206.15 ENSMUSG00000034206 ENSMUST00000182717 Polq protein_coding Interval_121105 chr4 153081821 153082615 + 0 NA Intergenic Intergenic 64725 ENSMUSG00000085648.1 ENSMUSG00000085648 ENSMUST00000151703 Gm13173 lincRNA Interval_44485 chr13 45306011 45307639 + 0 NA intron (ENSMUSG00000113772.1, intron 3 of 4) lincRNA-intron (ENSMUSG00000113772.1, intron 3 of 4) -11829 ENSMUSG00000088203.1 ENSMUSG00000088203 ENSMUST00000157578 Gm23755 misc_RNA Interval_156785 chr8 59621646 59622079 + 0 NA Intergenic Intergenic 62547 ENSMUSG00000088657.1 ENSMUSG00000088657 ENSMUST00000158032 Gm24847 snRNA Interval_121197 chr4 153974308 153975877 + 0 NA promoter-TSS (ENSMUSG00000029027.9) protein_coding-promoter-TSS (ENSMUSG00000029027.9) -2683 ENSMUSG00000029027.9 ENSMUSG00000029027 ENSMUST00000154458 Dffb protein_coding Interval_70703 chr17 13682596 13684220 + 0 NA promoter-TSS (ENSMUSG00000085705.1) lincRNA-promoter-TSS (ENSMUSG00000085705.1) 79 ENSMUSG00000085705.1 ENSMUSG00000085705 ENSMUST00000128138 Gm16046 lincRNA Interval_84420 chr19 10784192 10784561 + 0 NA promoter-TSS (ENSMUSG00000067577.8) processed_transcript-promoter-TSS (ENSMUSG00000067577.8) 2461 ENSMUSG00000067577.8 ENSMUSG00000067577 ENSMUST00000186052 A430093F15Rik processed_transcript Interval_73429 chr17 37189750 37192181 + 0 NA Intergenic Intergenic -2927 ENSMUSG00000035186.6 ENSMUSG00000035186 ENSMUST00000038844 Ubd protein_coding Interval_88975 chr2 13892385 13892824 + 0 NA intron (ENSMUSG00000063275.15, intron 7 of 7) protein_coding-intron (ENSMUSG00000063275.15, intron 7 of 7) -99311 ENSMUSG00000003418.11 ENSMUSG00000003418 ENSMUST00000150781 St8sia6 protein_coding Interval_62265 chr15 89299354 89299939 + 0 NA TTS (ENSMUSG00000036529.17) protein_coding-TTS (ENSMUSG00000036529.17) -5836 ENSMUSG00000036529.17 ENSMUSG00000036529 ENSMUST00000146637 Sbf1 protein_coding Interval_19096 chr10 94520037 94521895 + 0 NA intron (ENSMUSG00000020023.18, intron 1 of 3) protein_coding-intron (ENSMUSG00000020023.18, intron 1 of 3) -29886 ENSMUSG00000020023.18 ENSMUSG00000020023 ENSMUST00000117929 Tmcc3 protein_coding Interval_35932 chr12 32113071 32113382 + 0 NA TTS (ENSMUSG00000112071.1) lincRNA-TTS (ENSMUSG00000112071.1) 10476 ENSMUSG00000112071.1 ENSMUSG00000112071 ENSMUST00000218836 5430401H09Rik lincRNA Interval_120462 chr4 148770668 148771826 + 0 NA Intergenic Intergenic 57544 ENSMUSG00000087273.1 ENSMUSG00000087273 ENSMUST00000139895 Gm13203 lincRNA Interval_58885 chr15 39721479 39722519 + 0 NA Intergenic Intergenic -23935 ENSMUSG00000022303.9 ENSMUSG00000022303 ENSMUST00000227792 Dcstamp protein_coding Interval_26704 chr11 59852749 59853063 + 0 NA intron (ENSMUSG00000032615.14, intron 2 of 4) protein_coding-intron (ENSMUSG00000032615.14, intron 2 of 4) 13459 ENSMUSG00000032615.14 ENSMUSG00000032615 ENSMUST00000137695 Nt5m protein_coding Interval_108155 chr3 122032186 122032732 + 0 NA Intergenic Intergenic 8629 ENSMUSG00000104869.1 ENSMUSG00000104869 ENSMUST00000197868 Gm42544 TEC Interval_37447 chr12 69009278 69009494 + 0 NA Intergenic Intergenic -14416 ENSMUSG00000113320.1 ENSMUSG00000113320 ENSMUST00000221589 Gm47515 lincRNA Interval_85509 chr19 27702521 27703522 + 0 NA TTS (ENSMUSG00000088266.1) snoRNA-TTS (ENSMUSG00000088266.1) 986 ENSMUSG00000088266.1 ENSMUSG00000088266 ENSMUST00000157641 Gm24782 snoRNA Interval_106296 chr3 95224361 95224644 + 0 NA intron (ENSMUSG00000097167.1, intron 3 of 3) protein_coding-intron (ENSMUSG00000053192.9, intron 1 of 1) -4308 ENSMUSG00000046722.14 ENSMUSG00000046722 ENSMUST00000107199 Cdc42se1 protein_coding Interval_134554 chr6 29513421 29513787 + 0 NA Intergenic Intergenic 5879 ENSMUSG00000097137.1 ENSMUSG00000097137 ENSMUST00000181540 Gm26627 antisense Interval_121564 chr5 3472618 3474929 + 0 NA promoter-TSS (ENSMUSG00000106588.1) antisense-promoter-TSS (ENSMUSG00000106588.1) 2824 ENSMUSG00000040274.11 ENSMUSG00000040274 ENSMUST00000199396 Cdk6 protein_coding Interval_162015 chr8 124433414 124434943 + 0 NA promoter-TSS (ENSMUSG00000050751.14) protein_coding-promoter-TSS (ENSMUSG00000050751.14) 5480 ENSMUSG00000050751.14 ENSMUSG00000050751 ENSMUST00000140126 Pgbd5 protein_coding Interval_47804 chr13 93162938 93163544 + 0 NA intron (ENSMUSG00000042167.6, intron 2 of 3) protein_coding-intron (ENSMUSG00000042167.6, intron 10 of 14) 5188 ENSMUSG00000042167.6 ENSMUSG00000042167 ENSMUST00000224464 Tent2 protein_coding Interval_101539 chr3 4584435 4585444 + 0 NA Intergenic Intergenic -17604 ENSMUSG00000089287.1 ENSMUSG00000089287 ENSMUST00000158662 Gm22944 snoRNA Interval_126680 chr5 92009136 92009343 + 0 NA intron (ENSMUSG00000029403.14, intron 12 of 13) protein_coding-intron (ENSMUSG00000029403.14, intron 12 of 12) 21764 ENSMUSG00000096035.2 ENSMUSG00000096035 ENSMUST00000178614 Odaph protein_coding Interval_84209 chr19 8773973 8775353 + 0 NA promoter-TSS (ENSMUSG00000118346.1) protein_coding-promoter-TSS (ENSMUSG00000118346.1) -196 ENSMUSG00000118346.1 ENSMUSG00000118346 ENSMUST00000010249 Tmem179b protein_coding Interval_101842 chr3 9939943 9940637 + 0 NA Intergenic Intergenic 31711 ENSMUSG00000103698.1 ENSMUSG00000103698 ENSMUST00000192578 Gm17877 processed_pseudogene Interval_116044 chr4 107195861 107196302 + 0 NA intron (ENSMUSG00000028618.11, intron 5 of 6) protein_coding-intron (ENSMUSG00000028618.11, intron 6 of 7) -13099 ENSMUSG00000070877.4 ENSMUSG00000070877 ENSMUST00000094916 Ldlrad1 protein_coding Interval_145948 chr7 42576228 42576876 + 0 NA exon (ENSMUSG00000108446.1, exon 1 of 1) processed_transcript-exon (ENSMUSG00000108446.1, exon 1 of 1) 1683 ENSMUSG00000108446.1 ENSMUSG00000108446 ENSMUST00000205775 Gm44997 processed_transcript Interval_12314 chr1 191623022 191626211 + 0 NA TTS (ENSMUSG00000037461.10) protein_coding-TTS (ENSMUSG00000037461.10) 26969 ENSMUSG00000102970.1 ENSMUSG00000102970 ENSMUST00000194205 Gm37349 TEC Interval_132305 chr5 144053447 144054644 + 0 NA Intergenic Intergenic 15145 ENSMUSG00000105150.1 ENSMUSG00000105150 ENSMUST00000197465 Gm43615 processed_pseudogene Interval_17332 chr10 75931998 75933103 + 0 NA promoter-TSS (ENSMUSG00000000901.17) protein_coding-promoter-TSS (ENSMUSG00000000901.17) -580 ENSMUSG00000049422.7 ENSMUSG00000049422 ENSMUST00000219435 Chchd10 protein_coding Interval_116199 chr4 108648559 108649070 + 0 NA intron (ENSMUSG00000034557.14, intron 15 of 17) protein_coding-intron (ENSMUSG00000034557.14, intron 13 of 15) -11373 ENSMUSG00000091985.1 ENSMUSG00000091985 ENSMUST00000170933 Gm17354 lincRNA Interval_77554 chr17 91481721 91481969 + 0 NA Intergenic Intergenic 54745 ENSMUSG00000117396.1 ENSMUSG00000117396 ENSMUST00000234004 Gm49989 processed_pseudogene Interval_76837 chr17 84420883 84421322 + 0 NA intron (ENSMUSG00000024251.10, intron 6 of 14) protein_coding-intron (ENSMUSG00000024251.10, intron 21 of 37) 29673 ENSMUSG00000096415.1 ENSMUSG00000096415 ENSMUST00000179017 Gm24722 snRNA Interval_90801 chr2 32673189 32673824 + 0 NA exon (ENSMUSG00000026814.16, exon 2 of 2) protein_coding-exon (ENSMUSG00000026814.16, exon 2 of 2) 663 ENSMUSG00000026814.16 ENSMUSG00000026814 ENSMUST00000156306 Eng protein_coding Interval_31009 chr11 97689993 97690434 + 0 NA TTS (ENSMUSG00000018537.16) protein_coding-TTS (ENSMUSG00000018537.16) 4236 ENSMUSG00000078695.8 ENSMUSG00000078695 ENSMUST00000145623 Cisd3 protein_coding Interval_131468 chr5 137416860 137418270 + 0 NA intron (ENSMUSG00000079173.11, intron 45 of 86) protein_coding-intron (ENSMUSG00000079173.11, intron 46 of 87) -15422 ENSMUSG00000106476.1 ENSMUSG00000106476 ENSMUST00000196458 Rpl36-ps9 processed_pseudogene Interval_45523 chr13 55652185 55652431 + 0 NA intron (ENSMUSG00000021500.17, intron 7 of 15) protein_coding-intron (ENSMUSG00000021500.17, intron 7 of 21) -17456 ENSMUSG00000021500.17 ENSMUSG00000021500 ENSMUST00000231097 Ddx46 protein_coding Interval_131511 chr5 137649507 137650403 + 0 NA TTS (ENSMUSG00000029722.15) protein_coding-TTS (ENSMUSG00000029722.15) -4418 ENSMUSG00000047182.6 ENSMUSG00000047182 ENSMUST00000057314 Irs3 protein_coding Interval_109965 chr3 152222549 152222886 + 0 NA promoter-TSS (ENSMUSG00000028034.15) protein_coding-promoter-TSS (ENSMUSG00000028034.15) 12235 ENSMUSG00000028034.15 ENSMUSG00000028034 ENSMUST00000200207 Fubp1 protein_coding Interval_7258 chr1 128282757 128283492 + 0 NA Intergenic Intergenic 9140 ENSMUSG00000026354.8 ENSMUSG00000026354 ENSMUST00000162067 Lct protein_coding Interval_67812 chr16 57386703 57387284 + 0 NA intron (ENSMUSG00000043336.14, intron 1 of 4) protein_coding-intron (ENSMUSG00000043336.14, intron 1 of 4) 33900 ENSMUSG00000043336.14 ENSMUSG00000043336 ENSMUST00000159414 Filip1l protein_coding Interval_113764 chr4 58442176 58442902 + 0 NA intron (ENSMUSG00000038668.14, intron 3 of 3) protein_coding-intron (ENSMUSG00000038668.14, intron 3 of 3) -1441 ENSMUSG00000093293.1 ENSMUSG00000093293 ENSMUST00000175552 Mir3095 miRNA Interval_53262 chr14 55659763 55660919 + 0 NA promoter-TSS (ENSMUSG00000002329.7) protein_coding-promoter-TSS (ENSMUSG00000002329.7) 89 ENSMUSG00000002329.7 ENSMUSG00000002329 ENSMUST00000228093 Mdp1 protein_coding Interval_20497 chr10 117951683 117954131 + 0 NA Intergenic Intergenic 27448 ENSMUSG00000112500.1 ENSMUSG00000112500 ENSMUST00000217950 4933411E08Rik lincRNA Interval_97254 chr2 132669231 132669710 + 0 NA Intergenic Intergenic 4519 ENSMUSG00000084089.1 ENSMUSG00000084089 ENSMUST00000117769 Gm14099 processed_pseudogene Interval_75543 chr17 67916689 67917522 + 0 NA intron (ENSMUSG00000024043.13, intron 1 of 17) protein_coding-intron (ENSMUSG00000024043.13, intron 1 of 17) -44057 ENSMUSG00000024043.13 ENSMUSG00000024043 ENSMUST00000170581 Arhgap28 protein_coding Interval_48942 chr13 105256175 105258028 + 0 NA intron (ENSMUSG00000021720.11, intron 2 of 7) protein_coding-intron (ENSMUSG00000021720.11, intron 1 of 6) -33703 ENSMUSG00000077578.1 ENSMUSG00000077578 ENSMUST00000104390 Gm25631 snoRNA Interval_96456 chr2 123717848 123718065 + 0 NA Intergenic Intergenic 412000 ENSMUSG00000085496.1 ENSMUSG00000085496 ENSMUST00000129584 4930517E11Rik lincRNA Interval_86896 chr19 44692503 44693157 + 0 NA exon (ENSMUSG00000097683.2, exon 2 of 2) lincRNA-exon (ENSMUSG00000097683.2, exon 2 of 2) 2630 ENSMUSG00000097683.2 ENSMUSG00000097683 ENSMUST00000181365 Gm26644 lincRNA Interval_172996 chrX 60780841 60781008 + 0 NA intron (ENSMUSG00000067835.4, intron 7 of 11) antisense-intron (ENSMUSG00000067835.4, intron 7 of 11) -37284 ENSMUSG00000081891.1 ENSMUSG00000081891 ENSMUST00000119809 Gm14660 processed_pseudogene Interval_168488 chr9 82348194 82349285 + 0 NA Intergenic Intergenic 88446 ENSMUSG00000099266.1 ENSMUSG00000099266 ENSMUST00000183678 1700063H06Rik lincRNA Interval_165273 chr9 45959793 45960851 + 0 NA Intergenic Intergenic 6221 ENSMUSG00000111329.1 ENSMUSG00000111329 ENSMUST00000216147 A830035O19Rik antisense Interval_74145 chr17 46792693 46794216 + 0 NA Intergenic Intergenic -10817 ENSMUSG00000063888.7 ENSMUSG00000063888 ENSMUST00000233919 Rpl7l1 protein_coding Interval_65420 chr16 22238717 22240333 + 0 NA Intergenic Intergenic 2604 ENSMUSG00000098043.1 ENSMUSG00000098043 ENSMUST00000183321 Gm26980 processed_pseudogene Interval_17212 chr10 75020846 75021847 + 0 NA TTS (ENSMUSG00000009070.14) protein_coding-TTS (ENSMUSG00000009070.14) 11207 ENSMUSG00000009070.14 ENSMUSG00000009070 ENSMUST00000159761 Rsph14 protein_coding Interval_24277 chr11 32030886 32031817 + 0 NA intron (ENSMUSG00000020297.10, intron 3 of 4) protein_coding-intron (ENSMUSG00000020297.10, intron 3 of 4) 30888 ENSMUSG00000020297.10 ENSMUSG00000020297 ENSMUST00000093219 Nsg2 protein_coding Interval_148221 chr7 79955799 79956780 + 0 NA Intergenic Intergenic 7102 ENSMUSG00000077059.1 ENSMUSG00000077059 ENSMUST00000103871 Gm24541 miRNA Interval_99596 chr2 163445802 163446302 + 0 NA exon (ENSMUSG00000017943.15, exon 2 of 6) protein_coding-exon (ENSMUSG00000017943.15, exon 2 of 6) 7519 ENSMUSG00000017943.15 ENSMUSG00000017943 ENSMUST00000137070 Gdap1l1 protein_coding Interval_55068 chr14 77659872 77660684 + 0 NA intron (ENSMUSG00000022012.9, intron 10 of 13) protein_coding-intron (ENSMUSG00000022012.9, intron 14 of 18) -26418 ENSMUSG00000115363.1 ENSMUSG00000115363 ENSMUST00000227098 Gm49003 antisense Interval_40560 chr12 105744730 105744989 + 0 NA promoter-TSS (ENSMUSG00000041323.6) protein_coding-promoter-TSS (ENSMUSG00000041323.6) 26003 ENSMUSG00000041323.6 ENSMUSG00000041323 ENSMUST00000220702 Ak7 protein_coding Interval_123548 chr5 33430470 33434924 + 0 NA intron (ENSMUSG00000029112.5, intron 1 of 1) protein_coding-intron (ENSMUSG00000029112.5, intron 1 of 1) 1279 ENSMUSG00000029112.5 ENSMUSG00000029112 ENSMUST00000173348 Nkx1-1 protein_coding Interval_88933 chr2 13129617 13129974 + 0 NA intron (ENSMUSG00000026727.10, intron 2 of 2) protein_coding-intron (ENSMUSG00000026727.10, intron 8 of 8) -11360 ENSMUSG00000103360.1 ENSMUSG00000103360 ENSMUST00000194601 Gm38156 TEC Interval_119633 chr4 138866360 138866960 + 0 NA Intergenic Intergenic 7304 ENSMUSG00000078518.1 ENSMUSG00000078518 ENSMUST00000105805 Gm13030 protein_coding Interval_99835 chr2 165211346 165212311 + 0 NA intron (ENSMUSG00000053166.14, intron 1 of 11) protein_coding-intron (ENSMUSG00000053166.14, intron 1 of 11) -30369 ENSMUSG00000053166.14 ENSMUSG00000053166 ENSMUST00000138643 Cdh22 protein_coding Interval_32612 chr11 109156580 109156802 + 0 NA Intergenic Intergenic 3503 ENSMUSG00000081524.3 ENSMUSG00000081524 ENSMUST00000120913 Gm11658 processed_pseudogene Interval_129780 chr5 122301135 122302618 + 0 NA promoter-TSS (ENSMUSG00000083909.1) processed_pseudogene-promoter-TSS (ENSMUSG00000083909.1) -546 ENSMUSG00000083909.1 ENSMUSG00000083909 ENSMUST00000120513 Gm15842 processed_pseudogene Interval_158392 chr8 83342500 83342953 + 0 NA Intergenic Intergenic -9830 ENSMUSG00000082136.1 ENSMUSG00000082136 ENSMUST00000118997 Gm15660 processed_pseudogene Interval_47883 chr13 94143457 94143672 + 0 NA intron (ENSMUSG00000045312.12, intron 1 of 1) protein_coding-intron (ENSMUSG00000045312.12, intron 2 of 3) -3447 ENSMUSG00000087319.1 ENSMUSG00000087319 ENSMUST00000134284 Gm15907 lincRNA Interval_61880 chr15 84893948 84894165 + 0 NA Intergenic Intergenic -12586 ENSMUSG00000116491.1 ENSMUSG00000116491 ENSMUST00000230387 4930513L16Rik lincRNA Interval_87446 chr19 51296617 51297022 + 0 NA Intergenic Intergenic -57023 ENSMUSG00000065143.1 ENSMUSG00000065143 ENSMUST00000083209 Gm25644 snRNA Interval_93287 chr2 71690181 71691327 + 0 NA Intergenic Intergenic -28663 ENSMUSG00000064263.6 ENSMUSG00000064263 ENSMUST00000079720 Platr26 lincRNA Interval_149309 chr7 97350714 97351128 + 0 NA TTS (ENSMUSG00000044952.5) protein_coding-TTS (ENSMUSG00000044952.5) 18594 ENSMUSG00000044952.5 ENSMUSG00000044952 ENSMUST00000054107 Kctd21 protein_coding Interval_156659 chr8 56557372 56557620 + 0 NA intron (ENSMUSG00000038206.13, intron 1 of 2) protein_coding-intron (ENSMUSG00000038206.13, intron 1 of 5) -3420 ENSMUSG00000110318.1 ENSMUSG00000110318 ENSMUST00000209582 Gm2767 processed_pseudogene Interval_149740 chr7 101054677 101055200 + 0 NA Intergenic Intergenic 6537 ENSMUSG00000109171.1 ENSMUSG00000109171 ENSMUST00000207053 Gm5735 processed_pseudogene Interval_128135 chr5 111217388 111217805 + 0 NA intron (ENSMUSG00000033209.17, intron 6 of 22) protein_coding-intron (ENSMUSG00000033209.17, intron 7 of 23) 20456 ENSMUSG00000105027.1 ENSMUSG00000105027 ENSMUST00000197532 Gm43676 TEC Interval_87107 chr19 46152054 46152834 + 0 NA promoter-TSS (ENSMUSG00000025224.16) protein_coding-promoter-TSS (ENSMUSG00000025224.16) -136 ENSMUSG00000025224.16 ENSMUSG00000025224 ENSMUST00000176046 Gbf1 protein_coding Interval_159735 chr8 99675234 99675979 + 0 NA intron (ENSMUSG00000052479.5, intron 1 of 4) lincRNA-intron (ENSMUSG00000052479.5, intron 1 of 4) 11587 ENSMUSG00000083586.2 ENSMUSG00000083586 ENSMUST00000118240 Gm8688 unprocessed_pseudogene Interval_32755 chr11 110366624 110367119 + 0 NA Intergenic Intergenic -29155 ENSMUSG00000018800.14 ENSMUSG00000018800 ENSMUST00000148984 Abca5 protein_coding Interval_10478 chr1 171229734 171231094 + 0 NA TTS (ENSMUSG00000058715.11) protein_coding-TTS (ENSMUSG00000058715.11) 3893 ENSMUSG00000058715.11 ENSMUSG00000058715 ENSMUST00000150997 Fcer1g protein_coding Interval_56150 chr14 107528675 107528882 + 0 NA Intergenic Intergenic -2534 ENSMUSG00000115510.1 ENSMUSG00000115510 ENSMUST00000227311 Gm9334 processed_pseudogene Interval_152472 chr7 133202194 133203422 + 0 NA Intergenic Intergenic 74557 ENSMUSG00000109816.1 ENSMUSG00000109816 ENSMUST00000209850 4930483O08Rik lincRNA Interval_15121 chr10 42680589 42680947 + 0 NA intron (ENSMUSG00000038280.12, intron 1 of 3) protein_coding-intron (ENSMUSG00000038280.12, intron 1 of 5) 1802 ENSMUSG00000038280.12 ENSMUSG00000038280 ENSMUST00000154048 Ostm1 protein_coding Interval_43819 chr13 37279156 37279684 + 0 NA Intergenic Intergenic 30760 ENSMUSG00000114249.1 ENSMUSG00000114249 ENSMUST00000225533 Gm47709 lincRNA Interval_147788 chr7 73551957 73552927 + 0 NA exon (ENSMUSG00000108563.1, exon 3 of 4) antisense-exon (ENSMUSG00000108563.1, exon 3 of 4) 5705 ENSMUSG00000101970.8 ENSMUSG00000101970 ENSMUST00000184655 1810026B05Rik processed_transcript Interval_91490 chr2 39380424 39380837 + 0 NA Intergenic Intergenic -14783 ENSMUSG00000083401.1 ENSMUSG00000083401 ENSMUST00000120391 Gm13506 unprocessed_pseudogene Interval_163133 chr9 15536496 15537265 + 0 NA intron (ENSMUSG00000058173.12, intron 2 of 2) protein_coding-intron (ENSMUSG00000058173.12, intron 2 of 2) 43448 ENSMUSG00000058173.12 ENSMUSG00000058173 ENSMUST00000178999 Smco4 protein_coding Interval_165889 chr9 54296273 54297219 + 0 NA intron (ENSMUSG00000046167.5, intron 1 of 9) protein_coding-intron (ENSMUSG00000046167.5, intron 1 of 9) 4824 ENSMUSG00000074343.3 ENSMUSG00000074343 ENSMUST00000149237 Gldnos antisense Interval_63893 chr16 4299632 4300239 + 0 NA intron (ENSMUSG00000005580.11, intron 8 of 11) protein_coding-intron (ENSMUSG00000005580.11, intron 6 of 9) 20745 ENSMUSG00000084304.1 ENSMUSG00000084304 ENSMUST00000120290 Gm6142 processed_pseudogene Interval_149622 chr7 100117765 100118295 + 0 NA intron (ENSMUSG00000030726.16, intron 3 of 12) protein_coding-intron (ENSMUSG00000030726.16, intron 2 of 11) -16570 ENSMUSG00000030726.16 ENSMUSG00000030726 ENSMUST00000156202 Pold3 protein_coding Interval_87685 chr19 54605429 54605658 + 0 NA Intergenic Intergenic 160563 ENSMUSG00000117755.1 ENSMUSG00000117755 ENSMUST00000236789 Gm50188 processed_pseudogene Interval_31995 chr11 104345921 104346208 + 0 NA intron (ENSMUSG00000018412.16, intron 7 of 13) protein_coding-intron (ENSMUSG00000018412.16, intron 8 of 14) 79236 ENSMUSG00000106014.1 ENSMUSG00000106014 ENSMUST00000195891 Gm47315 miRNA Interval_13897 chr10 24396417 24396635 + 0 NA Intergenic Intergenic -50964 ENSMUSG00000086148.1 ENSMUSG00000086148 ENSMUST00000134627 Gm15271 lincRNA Interval_16749 chr10 67920469 67921898 + 0 NA Intergenic Intergenic -8748 ENSMUSG00000037855.15 ENSMUSG00000037855 ENSMUST00000138543 Zfp365 protein_coding Interval_114380 chr4 74411260 74411450 + 0 NA Intergenic Intergenic 148546 ENSMUSG00000028397.13 ENSMUSG00000028397 ENSMUST00000150439 Kdm4c protein_coding Interval_136594 chr6 56306905 56307325 + 0 NA intron (ENSMUSG00000004347.17, intron 4 of 19) protein_coding-intron (ENSMUSG00000004347.17, intron 2 of 18) -134084 ENSMUSG00000106152.1 ENSMUSG00000106152 ENSMUST00000198921 Gm44413 miRNA Interval_54733 chr14 74101528 74101743 + 0 NA intron (ENSMUSG00000115704.1, intron 3 of 4) lincRNA-intron (ENSMUSG00000115704.1, intron 3 of 4) 127409 ENSMUSG00000115559.1 ENSMUSG00000115559 ENSMUST00000227138 Gm49170 processed_pseudogene Interval_150748 chr7 114083493 114084395 + 0 NA intron (ENSMUSG00000055723.6, intron 1 of 5) protein_coding-intron (ENSMUSG00000055723.6, intron 1 of 5) -2954 ENSMUSG00000110248.1 ENSMUSG00000110248 ENSMUST00000210417 Gm45615 antisense Interval_15520 chr10 50679025 50679568 + 0 NA intron (ENSMUSG00000038774.9, intron 13 of 41) protein_coding-intron (ENSMUSG00000038774.9, intron 13 of 41) -17176 ENSMUSG00000112927.1 ENSMUSG00000112927 ENSMUST00000217818 Gm48332 TEC Interval_165229 chr9 45548232 45548716 + 0 NA intron (ENSMUSG00000032087.11, intron 3 of 32) protein_coding-intron (ENSMUSG00000032087.11, intron 3 of 32) 86338 ENSMUSG00000096202.1 ENSMUSG00000096202 ENSMUST00000179911 Gm22069 snRNA Interval_1279 chr1 19088270 19088587 + 0 NA intron (ENSMUSG00000089787.2, intron 1 of 3) antisense-intron (ENSMUSG00000089787.2, intron 1 of 3) 16412 ENSMUSG00000089787.2 ENSMUSG00000089787 ENSMUST00000159108 Gm15825 antisense Interval_60020 chr15 64018544 64019207 + 0 NA intron (ENSMUSG00000022378.14, intron 1 of 11) protein_coding-intron (ENSMUSG00000022378.14, intron 1 of 11) -7073 ENSMUSG00000065936.1 ENSMUSG00000065936 ENSMUST00000084002 Gm25628 snRNA Interval_168740 chr9 86576239 86577182 + 0 NA Intergenic Intergenic 4719 ENSMUSG00000032417.10 ENSMUSG00000032417 ENSMUST00000179212 Rwdd2a protein_coding Interval_79236 chr18 26659486 26659702 + 0 NA Intergenic Intergenic 164159 ENSMUSG00000088098.1 ENSMUSG00000088098 ENSMUST00000157473 Gm23674 snoRNA Interval_152374 chr7 132539935 132540184 + 0 NA intron (ENSMUSG00000030849.18, intron 2 of 6) protein_coding-intron (ENSMUSG00000030849.18, intron 2 of 6) 35659 ENSMUSG00000030934.9 ENSMUSG00000030934 ENSMUST00000211545 Oat protein_coding Interval_150661 chr7 113159491 113160194 + 0 NA Intergenic Intergenic -17827 ENSMUSG00000110009.1 ENSMUSG00000110009 ENSMUST00000210408 4930543E12Rik lincRNA Interval_139004 chr6 94164437 94165379 + 0 NA intron (ENSMUSG00000045095.16, intron 2 of 2) protein_coding-intron (ENSMUSG00000045095.16, intron 1 of 21) 159126 ENSMUSG00000107545.1 ENSMUSG00000107545 ENSMUST00000204466 Gm44307 processed_pseudogene Interval_74744 chr17 56276051 56277732 + 0 NA promoter-TSS (ENSMUSG00000047123.8) protein_coding-promoter-TSS (ENSMUSG00000047123.8) -105 ENSMUSG00000047123.8 ENSMUSG00000047123 ENSMUST00000058136 Ticam1 protein_coding Interval_40311 chr12 103508420 103508693 + 0 NA Intergenic Intergenic 25114 ENSMUSG00000113383.1 ENSMUSG00000113383 ENSMUST00000221223 Gm47267 lincRNA Interval_5325 chr1 87580736 87581112 + 0 NA intron (ENSMUSG00000079434.8, intron 2 of 3) protein_coding-intron (ENSMUSG00000079434.8, intron 2 of 3) 6897 ENSMUSG00000079434.8 ENSMUSG00000079434 ENSMUST00000070898 Neu2 protein_coding Interval_69748 chr16 96022923 96023235 + 0 NA intron (ENSMUSG00000022914.17, intron 14 of 22) protein_coding-intron (ENSMUSG00000022914.17, intron 31 of 41) -13011 ENSMUSG00000085884.1 ENSMUSG00000085884 ENSMUST00000146222 Gm15342 processed_transcript Interval_12891 chr10 7787290 7787601 + 0 NA intron (ENSMUSG00000040006.13, intron 1 of 1) protein_coding-intron (ENSMUSG00000040006.13, intron 1 of 1) 5379 ENSMUSG00000040006.13 ENSMUSG00000040006 ENSMUST00000065124 Ginm1 protein_coding Interval_120714 chr4 150239821 150240376 + 0 NA TTS (ENSMUSG00000063524.13) protein_coding-TTS (ENSMUSG00000063524.13) -7362 ENSMUSG00000063524.13 ENSMUSG00000063524 ENSMUST00000136310 Eno1 protein_coding Interval_10595 chr1 172116852 172117336 + 0 NA intron (ENSMUSG00000026553.17, intron 24 of 32) protein_coding-intron (ENSMUSG00000026553.17, intron 24 of 32) -9662 ENSMUSG00000003464.13 ENSMUSG00000003464 ENSMUST00000133081 Pex19 protein_coding Interval_115006 chr4 88375886 88376829 + 0 NA intron (ENSMUSG00000038368.16, intron 33 of 41) protein_coding-intron (ENSMUSG00000038368.16, intron 35 of 43) -23993 ENSMUSG00000038368.16 ENSMUSG00000038368 ENSMUST00000107147 Focad protein_coding Interval_129585 chr5 121149311 121149664 + 0 NA intron (ENSMUSG00000043733.14, intron 8 of 14) protein_coding-intron (ENSMUSG00000043733.14, intron 9 of 15) -5852 ENSMUSG00000043733.14 ENSMUSG00000043733 ENSMUST00000148871 Ptpn11 protein_coding Interval_19893 chr10 110986308 110987033 + 0 NA intron (ENSMUSG00000035798.14, intron 1 of 16) protein_coding-intron (ENSMUSG00000035798.14, intron 1 of 16) 23325 ENSMUSG00000035798.14 ENSMUSG00000035798 ENSMUST00000218981 Zdhhc17 protein_coding Interval_71305 chr17 22042583 22043471 + 0 NA intron (ENSMUSG00000053347.15, intron 5 of 5) protein_coding-intron (ENSMUSG00000053347.15, intron 5 of 5) -2488 ENSMUSG00000092147.1 ENSMUSG00000092147 ENSMUST00000167568 Gm7052 unprocessed_pseudogene Interval_27569 chr11 68779355 68780364 + 0 NA intron (ENSMUSG00000020900.15, intron 17 of 42) protein_coding-intron (ENSMUSG00000020900.15, intron 17 of 42) 80137 ENSMUSG00000018736.14 ENSMUSG00000018736 ENSMUST00000127469 Ndel1 protein_coding Interval_39234 chr12 86096021 86096756 + 0 NA intron (ENSMUSG00000007867.9, intron 1 of 5) protein_coding-intron (ENSMUSG00000007867.9, intron 2 of 7) 13780 ENSMUSG00000007867.9 ENSMUSG00000007867 ENSMUST00000220711 Ift43 protein_coding Interval_67166 chr16 44103071 44104252 + 0 NA intron (ENSMUSG00000052459.13, intron 8 of 11) protein_coding-intron (ENSMUSG00000052459.13, intron 8 of 14) 36044 ENSMUSG00000052459.13 ENSMUSG00000052459 ENSMUST00000147025 Atp6v1a protein_coding Interval_131029 chr5 134656831 134657027 + 0 NA exon (ENSMUSG00000029674.13, exon 16 of 16) protein_coding-exon (ENSMUSG00000029674.13, exon 16 of 16) 7276 ENSMUSG00000029674.13 ENSMUSG00000029674 ENSMUST00000132027 Limk1 protein_coding Interval_101967 chr3 13839374 13839711 + 0 NA exon (ENSMUSG00000102891.1, exon 1 of 1) processed_pseudogene-exon (ENSMUSG00000102891.1, exon 1 of 1) 689 ENSMUSG00000102891.1 ENSMUSG00000102891 ENSMUST00000193972 Gm19114 processed_pseudogene Interval_101332 chr2 180513156 180514380 + 0 NA intron (ENSMUSG00000027568.9, intron 1 of 4) protein_coding-intron (ENSMUSG00000027568.9, intron 1 of 3) 13541 ENSMUSG00000027568.9 ENSMUSG00000027568 ENSMUST00000170448 Ntsr1 protein_coding Interval_23117 chr11 20028278 20028531 + 0 NA Intergenic Intergenic 73834 ENSMUSG00000045671.17 ENSMUSG00000045671 ENSMUST00000123036 Spred2 protein_coding Interval_167816 chr9 72856571 72857671 + 0 NA intron (ENSMUSG00000036030.9, intron 10 of 19) protein_coding-intron (ENSMUSG00000036030.9, intron 10 of 19) -12531 ENSMUSG00000102971.1 ENSMUSG00000102971 ENSMUST00000192843 A730062M13Rik TEC Interval_161281 chr8 119473267 119473981 + 0 NA TTS (ENSMUSG00000031837.14) protein_coding-TTS (ENSMUSG00000031837.14) 21192 ENSMUSG00000031837.14 ENSMUSG00000031837 ENSMUST00000148328 Necab2 protein_coding Interval_116562 chr4 115709464 115710808 + 0 NA Intergenic Intergenic 2885 ENSMUSG00000081172.1 ENSMUSG00000081172 ENSMUST00000120013 Gm12849 processed_pseudogene Interval_43072 chr13 23597880 23598047 + 0 NA intron (ENSMUSG00000047246.7, intron 1 of 1) protein_coding-intron (ENSMUSG00000047246.7, intron 1 of 1) 16365 ENSMUSG00000061482.7 ENSMUSG00000061482 ENSMUST00000102968 H4c4 protein_coding Interval_42648 chr13 17700377 17701121 + 0 NA Intergenic Intergenic 5316 ENSMUSG00000012429.9 ENSMUSG00000012429 ENSMUST00000222292 Mplkip protein_coding Interval_62758 chr15 96675043 96675753 + 0 NA Intergenic Intergenic 3605 ENSMUSG00000064928.1 ENSMUSG00000064928 ENSMUST00000082994 Gm22045 snRNA Interval_7873 chr1 134316760 134316954 + 0 NA intron (ENSMUSG00000026458.13, intron 16 of 27) protein_coding-intron (ENSMUSG00000026458.13, intron 16 of 28) -12049 ENSMUSG00000026458.13 ENSMUSG00000026458 ENSMUST00000186553 Ppfia4 protein_coding Interval_130584 chr5 129032837 129033092 + 0 NA Intergenic Intergenic 12762 ENSMUSG00000029430.13 ENSMUSG00000029430 ENSMUST00000111343 Ran protein_coding Interval_128169 chr5 111442392 111442783 + 0 NA intron (ENSMUSG00000070576.4, intron 1 of 1) protein_coding-intron (ENSMUSG00000070576.4, intron 1 of 1) 18998 ENSMUSG00000106560.1 ENSMUSG00000106560 ENSMUST00000196957 Gm43119 TEC Interval_127666 chr5 106447969 106448946 + 0 NA Intergenic Intergenic 9709 ENSMUSG00000034384.11 ENSMUSG00000034384 ENSMUST00000086795 Barhl2 protein_coding Interval_167200 chr9 66118105 66119062 + 0 NA intron (ENSMUSG00000032382.14, intron 1 of 6) protein_coding-intron (ENSMUSG00000032382.14, intron 1 of 14) -8028 ENSMUSG00000032381.5 ENSMUSG00000032381 ENSMUST00000034945 Ciao2a protein_coding Interval_85722 chr19 30044684 30045045 + 0 NA intron (ENSMUSG00000024817.13, intron 2 of 8) protein_coding-intron (ENSMUSG00000024817.13, intron 2 of 15) -33640 ENSMUSG00000024817.13 ENSMUSG00000024817 ENSMUST00000143769 Uhrf2 protein_coding Interval_57402 chr15 10600487 10600858 + 0 NA promoter-TSS (ENSMUSG00000022246.14) protein_coding-promoter-TSS (ENSMUSG00000022246.14) 335 ENSMUSG00000115667.1 ENSMUSG00000115667 ENSMUST00000228059 Gm10389 antisense Interval_30731 chr11 96170736 96171267 + 0 NA Intergenic Intergenic -6550 ENSMUSG00000086337.1 ENSMUSG00000086337 ENSMUST00000145517 Gm11535 lincRNA Interval_125033 chr5 63976305 63976516 + 0 NA Intergenic Intergenic 14461 ENSMUSG00000106076.1 ENSMUSG00000106076 ENSMUST00000199444 Gm43840 processed_pseudogene Interval_47421 chr13 83802804 83803108 + 0 NA intron (ENSMUSG00000050334.12, intron 1 of 2) lincRNA-intron (ENSMUSG00000050334.12, intron 3 of 3) -29384 ENSMUSG00000114687.1 ENSMUSG00000114687 ENSMUST00000225105 Gm5452 processed_pseudogene Interval_96816 chr2 128552491 128552689 + 0 NA Intergenic Intergenic 5644 ENSMUSG00000082671.2 ENSMUSG00000082671 ENSMUST00000122132 Gm14006 processed_pseudogene Interval_118900 chr4 134362584 134363713 + 0 NA exon (ENSMUSG00000028838.11, exon 4 of 11) protein_coding-exon (ENSMUSG00000028838.11, exon 4 of 11) 2276 ENSMUSG00000028838.11 ENSMUSG00000028838 ENSMUST00000142730 Extl1 protein_coding Interval_19398 chr10 98949079 98949697 + 0 NA intron (ENSMUSG00000019943.10, intron 1 of 8) protein_coding-intron (ENSMUSG00000019943.10, intron 1 of 20) -41492 ENSMUSG00000019943.10 ENSMUSG00000019943 ENSMUST00000218419 Atp2b1 protein_coding Interval_171999 chr9 123357435 123358112 + 0 NA Intergenic Intergenic -9181 ENSMUSG00000035202.8 ENSMUSG00000035202 ENSMUST00000215087 Lars2 protein_coding Interval_163008 chr9 14486255 14486462 + 0 NA intron (ENSMUSG00000053914.9, intron 1 of 2) protein_coding-intron (ENSMUSG00000053914.9, intron 1 of 1) 14042 ENSMUSG00000053914.9 ENSMUSG00000053914 ENSMUST00000115647 Kdm4d protein_coding Interval_111336 chr4 19332950 19333143 + 0 NA intron (ENSMUSG00000056494.7, intron 3 of 17) protein_coding-intron (ENSMUSG00000056494.7, intron 3 of 17) 34713 ENSMUSG00000082320.1 ENSMUSG00000082320 ENSMUST00000118921 Gm11877 processed_pseudogene Interval_118597 chr4 132696163 132697209 + 0 NA intron (ENSMUSG00000028886.15, intron 8 of 15) protein_coding-intron (ENSMUSG00000028886.15, intron 7 of 14) 35842 ENSMUSG00000037752.4 ENSMUSG00000037752 ENSMUST00000143642 Xkr8 protein_coding Interval_9550 chr1 159292832 159294293 + 0 NA intron (ENSMUSG00000040782.12, intron 6 of 7) protein_coding-intron (ENSMUSG00000040782.12, intron 11 of 19) 44257 ENSMUSG00000103186.1 ENSMUSG00000103186 ENSMUST00000193887 Gm37088 TEC Interval_94679 chr2 93258615 93259093 + 0 NA intron (ENSMUSG00000027217.13, intron 2 of 9) protein_coding-intron (ENSMUSG00000027217.13, intron 2 of 9) 53661 ENSMUSG00000027217.13 ENSMUSG00000027217 ENSMUST00000152141 Tspan18 protein_coding Interval_128312 chr5 112482225 112483392 + 0 NA intron (ENSMUSG00000058153.15, intron 1 of 14) protein_coding-intron (ENSMUSG00000058153.15, intron 1 of 16) 33382 ENSMUSG00000072722.2 ENSMUSG00000072722 ENSMUST00000100882 Gm6588 protein_coding Interval_75947 chr17 73487659 73488318 + 0 NA Intergenic Intergenic -6263 ENSMUSG00000117023.1 ENSMUSG00000117023 ENSMUST00000233268 Gm49876 antisense Interval_150529 chr7 112085125 112085474 + 0 NA intron (ENSMUSG00000059263.9, intron 15 of 28) protein_coding-intron (ENSMUSG00000059263.9, intron 14 of 27) 61793 ENSMUSG00000059263.9 ENSMUSG00000059263 ENSMUST00000210526 Usp47 protein_coding Interval_76854 chr17 84540739 84541027 + 0 NA intron (ENSMUSG00000040852.6, intron 2 of 9) protein_coding-intron (ENSMUSG00000040852.6, intron 2 of 29) 10360 ENSMUSG00000117391.1 ENSMUSG00000117391 ENSMUST00000234072 4930500A05Rik antisense Interval_78484 chr18 13585838 13586135 + 0 NA intron (ENSMUSG00000117608.1, intron 2 of 5) lincRNA-intron (ENSMUSG00000117608.1, intron 2 of 5) 15414 ENSMUSG00000117608.1 ENSMUSG00000117608 ENSMUST00000234112 AC103362.1 lincRNA Interval_7301 chr1 128602130 128603364 + 0 NA Intergenic Intergenic -10454 ENSMUSG00000045382.6 ENSMUSG00000045382 ENSMUST00000142893 Cxcr4 protein_coding Interval_76814 chr17 84243879 84245289 + 0 NA intron (ENSMUSG00000024251.10, intron 6 of 12) protein_coding-intron (ENSMUSG00000024251.10, intron 31 of 37) 43163 ENSMUSG00000065732.1 ENSMUSG00000065732 ENSMUST00000083798 Gm24492 snRNA Interval_117236 chr4 120854525 120855546 + 0 NA exon (ENSMUSG00000032890.17, exon 1 of 8) protein_coding-exon (ENSMUSG00000032890.17, exon 1 of 8) 17547 ENSMUSG00000096876.1 ENSMUSG00000096876 ENSMUST00000179354 Gm23936 miRNA Interval_39104 chr12 85068375 85068897 + 0 NA intron (ENSMUSG00000021244.15, intron 18 of 19) protein_coding-intron (ENSMUSG00000021244.15, intron 19 of 20) -17738 ENSMUSG00000093629.1 ENSMUSG00000093629 ENSMUST00000177043 Prox2os antisense Interval_163445 chr9 21471962 21472482 + 0 NA intron (ENSMUSG00000033335.17, intron 5 of 19) protein_coding-intron (ENSMUSG00000033335.17, intron 5 of 20) 24342 ENSMUSG00000065547.1 ENSMUSG00000065547 ENSMUST00000083613 Mir199a-1 miRNA Interval_3253 chr1 55186941 55187376 + 0 NA intron (ENSMUSG00000025978.14, intron 6 of 7) protein_coding-intron (ENSMUSG00000025978.14, intron 7 of 8) -26105 ENSMUSG00000061863.6 ENSMUSG00000061863 ENSMUST00000161440 Gm6822 processed_pseudogene Interval_42760 chr13 19149819 19150146 + 0 NA exon (ENSMUSG00000021314.13, exon 21 of 21) protein_coding-exon (ENSMUSG00000021314.13, exon 21 of 21) -28042 ENSMUSG00000076744.2 ENSMUSG00000076744 ENSMUST00000103553 Trgv7 TR_V_gene Interval_1450 chr1 23632296 23632597 + 0 NA Intergenic Intergenic 57859 ENSMUSG00000099503.1 ENSMUSG00000099503 ENSMUST00000191140 Gm28822 lincRNA Interval_160782 chr8 112206406 112207064 + 0 NA Intergenic Intergenic 30231 ENSMUSG00000110435.1 ENSMUSG00000110435 ENSMUST00000212314 Gm3635 processed_pseudogene Interval_75884 chr17 72657911 72658290 + 0 NA Intergenic Intergenic 42345 ENSMUSG00000098193.1 ENSMUSG00000098193 ENSMUST00000183172 Gm26963 processed_pseudogene Interval_129572 chr5 121030111 121031255 + 0 NA Intergenic Intergenic -20603 ENSMUSG00000029608.10 ENSMUSG00000029608 ENSMUST00000200792 Rph3a protein_coding Interval_75519 chr17 67730275 67730506 + 0 NA intron (ENSMUSG00000032796.8, intron 3 of 15) protein_coding-intron (ENSMUSG00000032796.8, intron 3 of 62) 33125 ENSMUSG00000032796.8 ENSMUSG00000032796 ENSMUST00000233224 Lama1 protein_coding Interval_156434 chr8 48136101 48138225 + 0 NA intron (ENSMUSG00000031562.15, intron 3 of 3) protein_coding-intron (ENSMUSG00000031562.15, intron 3 of 5) 27001 ENSMUSG00000031562.15 ENSMUSG00000031562 ENSMUST00000174379 Dctd protein_coding Interval_100389 chr2 168755671 168755879 + 0 NA TTS (ENSMUSG00000027547.17) protein_coding-TTS (ENSMUSG00000027547.17) 168 ENSMUSG00000027547.17 ENSMUSG00000027547 ENSMUST00000130640 Sall4 protein_coding Interval_140334 chr6 116653704 116654823 + 0 NA intron (ENSMUSG00000042129.8, intron 3 of 4) protein_coding-intron (ENSMUSG00000042129.8, intron 3 of 10) 3567 ENSMUSG00000048489.12 ENSMUSG00000048489 ENSMUST00000204555 Depp1 protein_coding Interval_135631 chr6 41908312 41909089 + 0 NA Intergenic Intergenic -42930 ENSMUSG00000029865.4 ENSMUSG00000029865 ENSMUST00000031898 Sval1 protein_coding Interval_95037 chr2 103383161 103383441 + 0 NA TTS (ENSMUSG00000070794.11) lincRNA-TTS (ENSMUSG00000070794.11) 5741 ENSMUSG00000070794.11 ENSMUSG00000070794 ENSMUST00000153797 BC016548 lincRNA Interval_35049 chr12 16859675 16859924 + 0 NA Intergenic Intergenic -8918 ENSMUSG00000114018.1 ENSMUSG00000114018 ENSMUST00000221201 Gm36495 lincRNA Interval_174857 chrY 1010040 1010791 + 0 NA promoter-TSS (ENSMUSG00000069049.11) protein_coding-promoter-TSS (ENSMUSG00000069049.11) -184 ENSMUSG00000069049.11 ENSMUSG00000069049 ENSMUST00000134820 Eif2s3y protein_coding Interval_158331 chr8 81527592 81528124 + 0 NA intron (ENSMUSG00000037940.17, intron 2 of 24) protein_coding-intron (ENSMUSG00000037940.17, intron 2 of 23) 139214 ENSMUSG00000090732.1 ENSMUSG00000090732 ENSMUST00000164687 4930579O11Rik processed_transcript Interval_60823 chr15 76973049 76974848 + 0 NA Intergenic Intergenic -14076 ENSMUSG00000116339.1 ENSMUSG00000116339 ENSMUST00000230431 Gm35933 lincRNA Interval_146964 chr7 56333249 56333469 + 0 NA intron (ENSMUSG00000030450.11, intron 17 of 22) protein_coding-intron (ENSMUSG00000030450.11, intron 18 of 23) -90209 ENSMUSG00000108773.1 ENSMUSG00000108773 ENSMUST00000206278 Gm44506 antisense Interval_78741 chr18 20049043 20049257 + 0 NA intron (ENSMUSG00000024331.11, intron 3 of 17) protein_coding-intron (ENSMUSG00000024331.11, intron 3 of 16) -11011 ENSMUSG00000024331.11 ENSMUSG00000024331 ENSMUST00000128464 Dsc2 protein_coding Interval_66189 chr16 32230348 32231091 + 0 NA exon (ENSMUSG00000035764.5, exon 3 of 3) protein_coding-exon (ENSMUSG00000035764.5, exon 3 of 3) 13136 ENSMUSG00000080440.1 ENSMUSG00000080440 ENSMUST00000116790 Gm25848 snoRNA Interval_72615 chr17 31072988 31074410 + 0 NA intron (ENSMUSG00000024030.7, intron 2 of 5) protein_coding-intron (ENSMUSG00000024030.7, intron 2 of 14) 14095 ENSMUSG00000089622.1 ENSMUSG00000089622 ENSMUST00000158997 Gm25447 rRNA Interval_26537 chr11 58636555 58637233 + 0 NA Intergenic Intergenic -3571 ENSMUSG00000037124.6 ENSMUSG00000037124 ENSMUST00000075084 Trim58 protein_coding Interval_80382 chr18 40620138 40620708 + 0 NA Intergenic Intergenic 80637 ENSMUSG00000118202.1 ENSMUSG00000118202 ENSMUST00000237191 C030017B01Rik lincRNA Interval_65111 chr16 19708608 19709311 + 0 NA Intergenic Intergenic -2584 ENSMUSG00000041247.8 ENSMUSG00000041247 ENSMUST00000081880 Lamp3 protein_coding Interval_166632 chr9 61426625 61427069 + 0 NA Intergenic Intergenic -15744 ENSMUSG00000111033.1 ENSMUSG00000111033 ENSMUST00000214224 Gm34322 lincRNA Interval_131881 chr5 140567141 140569049 + 0 NA Intergenic Intergenic -3024 ENSMUSG00000036586.6 ENSMUSG00000036586 ENSMUST00000042993 Grifin protein_coding Interval_34796 chr12 11265201 11267031 + 0 NA promoter-TSS (ENSMUSG00000051235.10) protein_coding-promoter-TSS (ENSMUSG00000051235.10) -15263 ENSMUSG00000051235.10 ENSMUSG00000051235 ENSMUST00000219537 Gen1 protein_coding Interval_152688 chr7 136272949 136273149 + 0 NA intron (ENSMUSG00000110027.1, intron 2 of 3) lincRNA-intron (ENSMUSG00000110027.1, intron 2 of 2) 4725 ENSMUSG00000110027.1 ENSMUSG00000110027 ENSMUST00000210209 C030029H02Rik lincRNA Interval_114969 chr4 87788818 87789691 + 0 NA intron (ENSMUSG00000028496.17, intron 1 of 3) protein_coding-intron (ENSMUSG00000028496.17, intron 8 of 10) 17069 ENSMUSG00000028496.17 ENSMUSG00000028496 ENSMUST00000142454 Mllt3 protein_coding Interval_111234 chr4 15328684 15328964 + 0 NA Intergenic Intergenic -54324 ENSMUSG00000096738.1 ENSMUSG00000096738 ENSMUST00000178536 Gm24317 snRNA Interval_9222 chr1 155209488 155209936 + 0 NA Intergenic Intergenic 15713 ENSMUSG00000033722.9 ENSMUSG00000033722 ENSMUST00000188492 BC034090 protein_coding Interval_40996 chr12 110504407 110505587 + 0 NA intron (ENSMUSG00000017843.14, intron 1 of 11) protein_coding-intron (ENSMUSG00000017843.14, intron 1 of 13) -19381 ENSMUSG00000113585.1 ENSMUSG00000113585 ENSMUST00000222863 Gm19605 processed_transcript Interval_117323 chr4 122998859 122999612 + 0 NA promoter-TSS (ENSMUSG00000028654.13) protein_coding-promoter-TSS (ENSMUSG00000028654.13) -104 ENSMUSG00000028654.13 ENSMUSG00000028654 ENSMUST00000147259 Mycl protein_coding Interval_90030 chr2 27403621 27404023 + 0 NA intron (ENSMUSG00000009621.18, intron 1 of 27) protein_coding-intron (ENSMUSG00000009621.18, intron 1 of 27) 1970 ENSMUSG00000076364.1 ENSMUSG00000076364 ENSMUST00000102409 Gm24049 miRNA Interval_54713 chr14 73516935 73517532 + 0 NA exon (ENSMUSG00000022109.6, exon 6 of 7) protein_coding-exon (ENSMUSG00000022109.6, exon 6 of 7) 7195 ENSMUSG00000022109.6 ENSMUSG00000022109 ENSMUST00000228141 Med4 protein_coding Interval_83903 chr19 5468221 5469082 + 0 NA promoter-TSS (ENSMUSG00000024910.5) protein_coding-promoter-TSS (ENSMUSG00000024910.5) -2326 ENSMUSG00000024910.5 ENSMUSG00000024910 ENSMUST00000236091 Ctsw protein_coding Interval_164667 chr9 40449579 40450629 + 0 NA intron (ENSMUSG00000040111.17, intron 1 of 20) protein_coding-intron (ENSMUSG00000040111.17, intron 1 of 19) -37616 ENSMUSG00000111515.1 ENSMUSG00000111515 ENSMUST00000215697 Gm5055 processed_pseudogene Interval_49142 chr13 108432408 108432623 + 0 NA Intergenic Intergenic 66123 ENSMUSG00000098836.1 ENSMUSG00000098836 ENSMUST00000183702 Gm27572 misc_RNA Interval_149051 chr7 92690143 92691354 + 0 NA Intergenic Intergenic -16025 ENSMUSG00000109395.1 ENSMUSG00000109395 ENSMUST00000207640 Gm45199 TEC Interval_1122 chr1 15850534 15851749 + 0 NA Intergenic Intergenic -2190 ENSMUSG00000104379.1 ENSMUSG00000104379 ENSMUST00000194867 Gm37509 TEC Interval_125723 chr5 73598991 73600262 + 0 NA Intergenic Intergenic 30686 ENSMUSG00000067206.3 ENSMUSG00000067206 ENSMUST00000152215 Lrrc66 protein_coding Interval_171053 chr9 114015695 114017013 + 0 NA intron (ENSMUSG00000032507.15, intron 2 of 15) protein_coding-intron (ENSMUSG00000032507.15, intron 2 of 14) 10372 ENSMUSG00000032507.15 ENSMUSG00000032507 ENSMUST00000141832 Fbxl2 protein_coding Interval_83042 chr18 80707565 80708703 + 0 NA promoter-TSS (ENSMUSG00000033016.16) protein_coding-promoter-TSS (ENSMUSG00000033016.16) 2944 ENSMUSG00000118265.1 ENSMUSG00000118265 ENSMUST00000237404 Gm50211 antisense Interval_107184 chr3 104425469 104426029 + 0 NA intron (ENSMUSG00000032913.13, intron 1 of 1) protein_coding-intron (ENSMUSG00000032913.13, intron 1 of 1) -7422 ENSMUSG00000106453.1 ENSMUSG00000106453 ENSMUST00000200606 Gm9273 processed_pseudogene Interval_96959 chr2 130011812 130013168 + 0 NA intron (ENSMUSG00000027401.9, intron 1 of 12) protein_coding-intron (ENSMUSG00000027401.9, intron 1 of 12) 141 ENSMUSG00000027401.9 ENSMUSG00000027401 ENSMUST00000110299 Tgm3 protein_coding Interval_5587 chr1 89991902 89993252 + 0 NA intron (ENSMUSG00000067081.13, intron 2 of 5) protein_coding-intron (ENSMUSG00000067081.13, intron 3 of 5) 3875 ENSMUSG00000067081.13 ENSMUSG00000067081 ENSMUST00000151330 Asb18 protein_coding Interval_39383 chr12 87025440 87026961 + 0 NA promoter-TSS (ENSMUSG00000034145.14) protein_coding-promoter-TSS (ENSMUSG00000034145.14) -416 ENSMUSG00000034145.14 ENSMUSG00000034145 ENSMUST00000131878 Tmem63c protein_coding Interval_79027 chr18 24042700 24043610 + 0 NA Intergenic Intergenic -22835 ENSMUSG00000051469.14 ENSMUSG00000051469 ENSMUST00000148525 Zfp24 protein_coding Interval_85022 chr19 21623515 21623702 + 0 NA intron (ENSMUSG00000035171.9, intron 1 of 2) protein_coding-intron (ENSMUSG00000035171.9, intron 1 of 3) 29002 ENSMUSG00000035171.9 ENSMUSG00000035171 ENSMUST00000178781 1110059E24Rik protein_coding Interval_92513 chr2 60234280 60234711 + 0 NA TTS (ENSMUSG00000026977.17) protein_coding-TTS (ENSMUSG00000026977.17) 24582 ENSMUSG00000026977.17 ENSMUSG00000026977 ENSMUST00000136367 Marchf7 protein_coding Interval_12583 chr10 3562281 3562874 + 0 NA Intergenic Intergenic 22289 ENSMUSG00000019762.4 ENSMUSG00000019762 ENSMUST00000141745 Iyd protein_coding Interval_20988 chr10 123060946 123061995 + 0 NA intron (ENSMUSG00000034602.15, intron 1 of 9) protein_coding-intron (ENSMUSG00000034602.15, intron 1 of 33) -31151 ENSMUSG00000034602.15 ENSMUSG00000034602 ENSMUST00000219203 Mon2 protein_coding Interval_81019 chr18 53020550 53021080 + 0 NA Intergenic Intergenic 68266 ENSMUSG00000118195.1 ENSMUSG00000118195 ENSMUST00000235787 Gm8572 processed_pseudogene Interval_8802 chr1 151270400 151271190 + 0 NA Intergenic Intergenic -9881 ENSMUSG00000088498.1 ENSMUSG00000088498 ENSMUST00000157873 Gm24402 snRNA Interval_166864 chr9 63360409 63360694 + 0 NA intron (ENSMUSG00000058444.8, intron 2 of 4) protein_coding-intron (ENSMUSG00000058444.8, intron 2 of 21) 17326 ENSMUSG00000058444.8 ENSMUSG00000058444 ENSMUST00000216999 Map2k5 protein_coding Interval_121448 chr4 155859204 155859807 + 0 NA TTS (ENSMUSG00000029071.16) protein_coding-TTS (ENSMUSG00000029071.16) 3857 ENSMUSG00000029072.3 ENSMUSG00000029072 ENSMUST00000030949 Tas1r3 protein_coding Interval_99739 chr2 164598533 164598799 + 0 NA intron (ENSMUSG00000070533.11, intron 6 of 6) protein_coding-intron (ENSMUSG00000070533.11, intron 6 of 7) -3270 ENSMUSG00000065797.1 ENSMUSG00000065797 ENSMUST00000083863 Gm25512 snRNA Interval_50800 chr14 19924115 19924343 + 0 NA intron (ENSMUSG00000043004.13, intron 3 of 5) protein_coding-intron (ENSMUSG00000043004.13, intron 3 of 5) 52955 ENSMUSG00000043004.13 ENSMUSG00000043004 ENSMUST00000161247 Gng2 protein_coding Interval_105394 chr3 85963194 85963523 + 0 NA promoter-TSS (ENSMUSG00000089077.1) snRNA-promoter-TSS (ENSMUSG00000089077.1) -448 ENSMUSG00000098444.1 ENSMUSG00000098444 ENSMUST00000185022 Gm27811 snRNA Interval_71477 chr17 24037105 24039454 + 0 NA exon (ENSMUSG00000050762.5, exon 1 of 6) protein_coding-exon (ENSMUSG00000050762.5, exon 1 of 6) 135 ENSMUSG00000050762.5 ENSMUSG00000050762 ENSMUST00000059482 Prss27 protein_coding Interval_170786 chr9 110745516 110745872 + 0 NA intron (ENSMUSG00000032492.14, intron 1 of 6) protein_coding-intron (ENSMUSG00000032492.14, intron 1 of 15) 1362 ENSMUSG00000032492.14 ENSMUSG00000032492 ENSMUST00000199791 Pth1r protein_coding Interval_119583 chr4 138497717 138498798 + 0 NA Intergenic Intergenic 43943 ENSMUSG00000046447.3 ENSMUSG00000046447 ENSMUST00000050918 Camk2n1 protein_coding Interval_6172 chr1 99395697 99396530 + 0 NA Intergenic Intergenic 244128 ENSMUSG00000099453.1 ENSMUSG00000099453 ENSMUST00000191164 Gm18248 processed_pseudogene Interval_50594 chr14 16312481 16314676 + 0 NA Intergenic Intergenic 9067 ENSMUSG00000114253.1 ENSMUSG00000114253 ENSMUST00000224494 Gm47798 sense_intronic Interval_113644 chr4 57232005 57233214 + 0 NA intron (ENSMUSG00000038764.14, intron 13 of 25) protein_coding-intron (ENSMUSG00000038764.14, intron 13 of 25) 60538 ENSMUSG00000085967.1 ENSMUSG00000085967 ENSMUST00000152074 Gm12530 antisense Interval_7247 chr1 128222353 128222716 + 0 NA intron (ENSMUSG00000056211.13, intron 3 of 7) protein_coding-intron (ENSMUSG00000056211.13, intron 22 of 26) 20173 ENSMUSG00000065520.2 ENSMUSG00000065520 ENSMUST00000083586 Mir128-1 miRNA Interval_90215 chr2 29073686 29076687 + 0 NA intron (ENSMUSG00000026803.17, intron 6 of 10) protein_coding-intron (ENSMUSG00000026803.17, intron 7 of 11) -13480 ENSMUSG00000086519.1 ENSMUSG00000086519 ENSMUST00000141935 Gm13393 lincRNA Interval_122603 chr5 24134049 24134507 + 0 NA intron (ENSMUSG00000028986.12, intron 4 of 11) protein_coding-intron (ENSMUSG00000028986.12, intron 4 of 10) -15614 ENSMUSG00000106133.1 ENSMUSG00000106133 ENSMUST00000197957 Gm3724 processed_pseudogene Interval_169053 chr9 91281536 91281790 + 0 NA Intergenic Intergenic -8259 ENSMUSG00000102814.1 ENSMUSG00000102814 ENSMUST00000195216 Gm37812 TEC Interval_121429 chr4 155739603 155741640 + 0 NA TTS (ENSMUSG00000029036.18) protein_coding-TTS (ENSMUSG00000029036.18) 5817 ENSMUSG00000084845.9 ENSMUSG00000084845 ENSMUST00000127188 Tmem240 protein_coding Interval_66299 chr16 32964573 32964917 + 0 NA intron (ENSMUSG00000022801.13, intron 6 of 18) protein_coding-intron (ENSMUSG00000022801.13, intron 6 of 20) -37158 ENSMUSG00000070225.1 ENSMUSG00000070225 ENSMUST00000093713 n-R5s33 rRNA Interval_133494 chr6 5802185 5802608 + 0 NA intron (ENSMUSG00000029757.16, intron 6 of 16) protein_coding-intron (ENSMUSG00000029757.16, intron 5 of 15) 44977 ENSMUSG00000029757.16 ENSMUSG00000029757 ENSMUST00000203520 Dync1i1 protein_coding Interval_25629 chr11 50291226 50292844 + 0 NA promoter-TSS (ENSMUSG00000050567.16) protein_coding-promoter-TSS (ENSMUSG00000050567.16) -231 ENSMUSG00000050567.16 ENSMUSG00000050567 ENSMUST00000059458 Maml1 protein_coding Interval_38708 chr12 81409095 81409725 + 0 NA intron (ENSMUSG00000091803.7, intron 3 of 4) protein_coding-intron (ENSMUSG00000091803.7, intron 3 of 3) 9598 ENSMUSG00000049246.5 ENSMUSG00000049246 ENSMUST00000051437 Hspe1-ps2 processed_pseudogene Interval_82173 chr18 68312981 68313893 + 0 NA intron (ENSMUSG00000009535.13, intron 5 of 6) protein_coding-intron (ENSMUSG00000009535.13, intron 5 of 10) 13039 ENSMUSG00000009535.13 ENSMUSG00000009535 ENSMUST00000148937 Rnmt protein_coding Interval_137920 chr6 83367999 83369407 + 0 NA exon (ENSMUSG00000034832.15, exon 11 of 11) protein_coding-exon (ENSMUSG00000034832.15, exon 11 of 11) 17663 ENSMUSG00000045160.14 ENSMUSG00000045160 ENSMUST00000148875 Bola3 protein_coding Interval_137301 chr6 71178122 71178553 + 0 NA Intergenic Intergenic 13538 ENSMUSG00000108206.1 ENSMUSG00000108206 ENSMUST00000204123 Gm44427 lincRNA Interval_91835 chr2 50048263 50049151 + 0 NA Intergenic Intergenic -79662 ENSMUSG00000050447.15 ENSMUSG00000050447 ENSMUST00000126337 Lypd6 protein_coding Interval_121870 chr5 9030878 9031492 + 0 NA Intergenic Intergenic -3595 ENSMUSG00000114430.1 ENSMUSG00000114430 ENSMUST00000224996 Gm40264 lincRNA Interval_170929 chr9 112374765 112374981 + 0 NA Intergenic Intergenic 86757 ENSMUSG00000110876.1 ENSMUSG00000110876 ENSMUST00000216779 4933411E02Rik lincRNA Interval_170110 chr9 104729935 104730283 + 0 NA intron (ENSMUSG00000032564.16, intron 2 of 8) protein_coding-intron (ENSMUSG00000032564.16, intron 2 of 15) -142570 ENSMUSG00000032564.16 ENSMUSG00000032564 ENSMUST00000213452 Cpne4 protein_coding Interval_172563 chrX 36805347 36806494 + 0 NA Intergenic Intergenic 8641 ENSMUSG00000016319.3 ENSMUSG00000016319 ENSMUST00000156672 Slc25a5 protein_coding Interval_6309 chr1 105780062 105781785 + 0 NA intron (ENSMUSG00000026321.7, intron 1 of 3) protein_coding-intron (ENSMUSG00000026321.7, intron 1 of 9) 173 ENSMUSG00000026321.7 ENSMUSG00000026321 ENSMUST00000187658 Tnfrsf11a protein_coding Interval_157877 chr8 75138530 75138951 + 0 NA Intergenic Intergenic 29116 ENSMUSG00000005410.6 ENSMUSG00000005410 ENSMUST00000211912 Mcm5 protein_coding Interval_123538 chr5 33335110 33336375 + 0 NA promoter-TSS (ENSMUSG00000079562.7) protein_coding-promoter-TSS (ENSMUSG00000079562.7) -24592 ENSMUSG00000092275.1 ENSMUSG00000092275 ENSMUST00000174768 Gm20465 lincRNA Interval_82376 chr18 73379530 73379732 + 0 NA Intergenic Intergenic 153919 ENSMUSG00000065922.1 ENSMUSG00000065922 ENSMUST00000083988 n-R5-8s1 rRNA Interval_72238 chr17 28743883 28744678 + 0 NA intron (ENSMUSG00000053436.15, intron 11 of 12) protein_coding-intron (ENSMUSG00000053436.15, intron 10 of 11) 18197 ENSMUSG00000117145.1 ENSMUSG00000117145 ENSMUST00000233003 Gm4356 protein_coding Interval_172634 chrX 38634620 38635756 + 0 NA promoter-TSS (ENSMUSG00000048970.9) protein_coding-promoter-TSS (ENSMUSG00000048970.9) -101 ENSMUSG00000048970.9 ENSMUSG00000048970 ENSMUST00000058265 C1galt1c1 protein_coding Interval_6720 chr1 118975961 118977492 + 0 NA intron (ENSMUSG00000048402.14, intron 2 of 9) protein_coding-intron (ENSMUSG00000048402.14, intron 2 of 13) 22506 ENSMUSG00000098273.1 ENSMUSG00000098273 ENSMUST00000183982 Mir6346 miRNA Interval_64427 chr16 11293389 11296288 + 0 NA Intergenic Intergenic -18974 ENSMUSG00000022496.5 ENSMUSG00000022496 ENSMUST00000023140 Tnfrsf17 protein_coding Interval_146390 chr7 45650691 45650998 + 0 NA TTS (ENSMUSG00000055978.5) protein_coding-TTS (ENSMUSG00000055978.5) 9364 ENSMUSG00000042918.17 ENSMUSG00000042918 ENSMUST00000210169 Mamstr protein_coding Interval_48887 chr13 104388588 104389070 + 0 NA intron (ENSMUSG00000046169.10, intron 12 of 24) protein_coding-intron (ENSMUSG00000046169.10, intron 11 of 24) 100994 ENSMUSG00000046169.10 ENSMUSG00000046169 ENSMUST00000224504 Adamts6 protein_coding Interval_96968 chr2 130144119 130145485 + 0 NA intron (ENSMUSG00000027403.12, intron 7 of 10) protein_coding-intron (ENSMUSG00000027403.12, intron 9 of 12) 21527 ENSMUSG00000027403.12 ENSMUSG00000027403 ENSMUST00000147616 Tgm6 protein_coding Interval_112245 chr4 38067184 38067387 + 0 NA Intergenic Intergenic 38440 ENSMUSG00000082899.1 ENSMUSG00000082899 ENSMUST00000119607 Gm12379 processed_pseudogene Interval_37887 chr12 72801088 72801493 + 0 NA Intergenic Intergenic -16422 ENSMUSG00000113779.1 ENSMUSG00000113779 ENSMUST00000222961 Gm33785 lincRNA Interval_45900 chr13 58971258 58972735 + 0 NA intron (ENSMUSG00000055254.15, intron 12 of 17) protein_coding-intron (ENSMUSG00000055254.15, intron 12 of 17) 106300 ENSMUSG00000114896.1 ENSMUSG00000114896 ENSMUST00000224384 Gm34245 TEC Interval_150219 chr7 108269754 108270388 + 0 NA exon (ENSMUSG00000109174.1, exon 1 of 1) processed_pseudogene-exon (ENSMUSG00000109174.1, exon 1 of 1) 542 ENSMUSG00000109174.1 ENSMUSG00000109174 ENSMUST00000208170 Gm6007 processed_pseudogene Interval_166607 chr9 61289111 61289439 + 0 NA intron (ENSMUSG00000111658.1, intron 2 of 4) lincRNA-intron (ENSMUSG00000111658.1, intron 2 of 4) 4534 ENSMUSG00000111658.1 ENSMUSG00000111658 ENSMUST00000213377 B930092H01Rik lincRNA Interval_57524 chr15 12091057 12092816 + 0 NA Intergenic Intergenic -6739 ENSMUSG00000115441.1 ENSMUSG00000115441 ENSMUST00000227908 Gm34759 lincRNA Interval_114624 chr4 83279149 83280168 + 0 NA promoter-TSS (ENSMUSG00000038172.14) protein_coding-promoter-TSS (ENSMUSG00000038172.14) 5511 ENSMUSG00000038172.14 ENSMUSG00000038172 ENSMUST00000148811 Ttc39b protein_coding Interval_165524 chr9 49013821 49014159 + 0 NA intron (ENSMUSG00000032267.8, intron 9 of 23) protein_coding-intron (ENSMUSG00000032267.8, intron 9 of 23) -23686 ENSMUSG00000032267.8 ENSMUSG00000032267 ENSMUST00000216657 Usp28 protein_coding Interval_146326 chr7 45353188 45353494 + 0 NA exon (ENSMUSG00000003863.18, exon 14 of 30) protein_coding-exon (ENSMUSG00000003863.18, exon 14 of 30) -12181 ENSMUSG00000003863.18 ENSMUSG00000003863 ENSMUST00000209424 Ppfia3 protein_coding Interval_125017 chr5 63906195 63907321 + 0 NA Intergenic Intergenic -17143 ENSMUSG00000087552.2 ENSMUSG00000087552 ENSMUST00000153089 Gm15819 antisense Interval_126343 chr5 86839209 86839995 + 0 NA Intergenic Intergenic 23904 ENSMUSG00000105309.1 ENSMUSG00000105309 ENSMUST00000200382 Gm21461 unprocessed_pseudogene Interval_79923 chr18 35952935 35953555 + 0 NA TTS (ENSMUSG00000080529.1) miRNA-TTS (ENSMUSG00000080529.1) 421 ENSMUSG00000080529.1 ENSMUSG00000080529 ENSMUST00000116879 Gm23882 miRNA Interval_113259 chr4 52517368 52518296 + 0 NA Intergenic Intergenic -20588 ENSMUSG00000061619.3 ENSMUSG00000061619 ENSMUST00000114578 Vma21-ps processed_pseudogene Interval_140406 chr6 117899783 117901304 + 0 NA intron (ENSMUSG00000042079.13, intron 1 of 3) protein_coding-intron (ENSMUSG00000042079.13, intron 1 of 3) 1342 ENSMUSG00000099810.1 ENSMUSG00000099810 ENSMUST00000185716 Gm29509 lincRNA Interval_110710 chr4 6707645 6708023 + 0 NA intron (ENSMUSG00000041272.11, intron 6 of 8) protein_coding-intron (ENSMUSG00000041272.11, intron 6 of 8) 19665 ENSMUSG00000086052.1 ENSMUSG00000086052 ENSMUST00000137749 Gm11802 antisense Interval_49409 chr13 111775624 111777746 + 0 NA intron (ENSMUSG00000021754.17, intron 1 of 19) protein_coding-intron (ENSMUSG00000021754.17, intron 1 of 19) -25312 ENSMUSG00000021754.17 ENSMUSG00000021754 ENSMUST00000145055 Map3k1 protein_coding Interval_1842 chr1 34096632 34098262 + 0 NA intron (ENSMUSG00000026131.20, intron 1 of 3) protein_coding-intron (ENSMUSG00000026131.20, intron 2 of 97) -19912 ENSMUSG00000105982.1 ENSMUSG00000105982 ENSMUST00000198033 Mir6896 miRNA Interval_82865 chr18 77596501 77596798 + 0 NA Intergenic Intergenic 83209 ENSMUSG00000117855.1 ENSMUSG00000117855 ENSMUST00000236419 Gm50197 processed_pseudogene Interval_156648 chr8 56409017 56409272 + 0 NA Intergenic Intergenic -44371 ENSMUSG00000110309.1 ENSMUSG00000110309 ENSMUST00000209962 Gm7419 processed_pseudogene Interval_16636 chr10 66697691 66698052 + 0 NA promoter-TSS (ENSMUSG00000112202.1) lincRNA-promoter-TSS (ENSMUSG00000112202.1) -370 ENSMUSG00000112202.1 ENSMUSG00000112202 ENSMUST00000217731 Gm31181 lincRNA Interval_148830 chr7 89146686 89147274 + 0 NA exon (ENSMUSG00000039428.11, exon 13 of 13) protein_coding-exon (ENSMUSG00000039428.11, exon 13 of 13) -1483 ENSMUSG00000039428.11 ENSMUSG00000039428 ENSMUST00000137723 Tmem135 protein_coding Interval_33733 chr11 118162126 118162348 + 0 NA intron (ENSMUSG00000017132.17, intron 12 of 13) protein_coding-intron (ENSMUSG00000017132.17, intron 12 of 13) 18798 ENSMUSG00000088119.1 ENSMUSG00000088119 ENSMUST00000157494 Gm24060 snRNA Interval_125354 chr5 66385345 66385952 + 0 NA intron (ENSMUSG00000029207.16, intron 5 of 12) protein_coding-intron (ENSMUSG00000029207.16, intron 9 of 17) 28730 ENSMUSG00000106910.1 ENSMUSG00000106910 ENSMUST00000202238 Gm16273 processed_pseudogene Interval_137197 chr6 69774872 69775065 + 0 NA TTS (ENSMUSG00000094094.2) IG_V_gene-TTS (ENSMUSG00000094094.2) 1376 ENSMUSG00000094094.2 ENSMUSG00000094094 ENSMUST00000103366 Igkv5-45 IG_V_gene Interval_53500 chr14 57881328 57882470 + 0 NA intron (ENSMUSG00000021969.8, intron 1 of 13) protein_coding-intron (ENSMUSG00000021969.8, intron 1 of 12) 8323 ENSMUSG00000021969.8 ENSMUSG00000021969 ENSMUST00000225955 Zdhhc20 protein_coding Interval_88392 chr2 4683945 4684492 + 0 NA Intergenic Intergenic -16020 ENSMUSG00000083378.3 ENSMUSG00000083378 ENSMUST00000118297 Gm13196 processed_pseudogene Interval_164930 chr9 43188432 43189505 + 0 NA intron (ENSMUSG00000032015.16, intron 2 of 12) protein_coding-intron (ENSMUSG00000032015.16, intron 2 of 12) -28154 ENSMUSG00000111864.1 ENSMUSG00000111864 ENSMUST00000216693 Rpl26-ps6 processed_pseudogene Interval_103738 chr3 52218653 52219257 + 0 NA intron (ENSMUSG00000103655.1, intron 2 of 3) lincRNA-intron (ENSMUSG00000103655.1, intron 2 of 3) 3042 ENSMUSG00000103655.1 ENSMUSG00000103655 ENSMUST00000193679 Gm37202 lincRNA Interval_127896 chr5 108686908 108687259 + 0 NA Intergenic Intergenic -12330 ENSMUSG00000046959.16 ENSMUSG00000046959 ENSMUST00000136227 Slc26a1 protein_coding Interval_76214 chr17 77372639 77373775 + 0 NA Intergenic Intergenic -9997 ENSMUSG00000117578.1 ENSMUSG00000117578 ENSMUST00000234215 Rpsa-ps8 processed_pseudogene Interval_24674 chr11 35811214 35812076 + 0 NA intron (ENSMUSG00000018848.4, intron 12 of 14) protein_coding-intron (ENSMUSG00000018848.4, intron 12 of 14) -12761 ENSMUSG00000051062.6 ENSMUSG00000051062 ENSMUST00000160726 Fbll1 protein_coding Interval_64272 chr16 10086444 10086803 + 0 NA Intergenic Intergenic -40658 ENSMUSG00000098170.1 ENSMUSG00000098170 ENSMUST00000182416 Gm3890 processed_pseudogene Interval_27863 chr11 70482056 70482247 + 0 NA Intergenic Intergenic 22211 ENSMUSG00000040829.14 ENSMUSG00000040829 ENSMUST00000092958 Zmynd15 protein_coding Interval_158241 chr8 80363862 80366487 + 0 NA Intergenic Intergenic -128607 ENSMUSG00000051839.7 ENSMUSG00000051839 ENSMUST00000063359 Gypa protein_coding Interval_500 chr1 6447969 6449386 + 0 NA Intergenic Intergenic -7381 ENSMUSG00000103845.1 ENSMUSG00000103845 ENSMUST00000194240 Gm19026 processed_pseudogene Interval_147847 chr7 74172666 74173682 + 0 NA Intergenic Intergenic -62384 ENSMUSG00000098303.1 ENSMUSG00000098303 ENSMUST00000184860 Gm27459 miRNA Interval_11197 chr1 180059416 180060607 + 0 NA intron (ENSMUSG00000026490.18, intron 5 of 37) protein_coding-intron (ENSMUSG00000026490.18, intron 5 of 34) 38949 ENSMUSG00000102194.1 ENSMUSG00000102194 ENSMUST00000191822 Gm38169 TEC Interval_91910 chr2 51238567 51239562 + 0 NA Intergenic Intergenic -2767 ENSMUSG00000086349.1 ENSMUSG00000086349 ENSMUST00000139497 Gm13497 lincRNA Interval_78404 chr18 12529820 12530402 + 0 NA intron (ENSMUSG00000024421.16, intron 15 of 37) protein_coding-intron (ENSMUSG00000024421.16, intron 52 of 74) -25685 ENSMUSG00000101406.1 ENSMUSG00000101406 ENSMUST00000188118 Gm29200 antisense Interval_106106 chr3 93149297 93149529 + 0 NA TTS (ENSMUSG00000078657.6) protein_coding-TTS (ENSMUSG00000078657.6) -2765 ENSMUSG00000103902.1 ENSMUSG00000103902 ENSMUST00000192830 Gm37501 processed_pseudogene Interval_29287 chr11 82696245 82696968 + 0 NA Intergenic Intergenic -28537 ENSMUSG00000083203.1 ENSMUSG00000083203 ENSMUST00000122124 Gm11421 processed_pseudogene Interval_44149 chr13 41249344 41250523 + 0 NA promoter-TSS (ENSMUSG00000091264.3) protein_coding-promoter-TSS (ENSMUSG00000091264.3) 89 ENSMUSG00000091264.3 ENSMUSG00000091264 ENSMUST00000165561 Smim13 protein_coding Interval_39628 chr12 91667375 91667865 + 0 NA intron (ENSMUSG00000020961.15, intron 3 of 4) protein_coding-intron (ENSMUSG00000020961.15, intron 4 of 6) -17045 ENSMUSG00000086689.1 ENSMUSG00000086689 ENSMUST00000151945 Gm16876 antisense Interval_29134 chr11 80518140 80519690 + 0 NA intron (ENSMUSG00000035441.14, intron 21 of 21) protein_coding-intron (ENSMUSG00000035441.14, intron 21 of 21) -9809 ENSMUSG00000085078.1 ENSMUSG00000085078 ENSMUST00000133400 C030013C21Rik sense_intronic Interval_130904 chr5 133818701 133820467 + 0 NA Intergenic Intergenic 22935 ENSMUSG00000106067.1 ENSMUSG00000106067 ENSMUST00000198842 Gm7902 processed_pseudogene Interval_115573 chr4 100913313 100913545 + 0 NA intron (ENSMUSG00000028532.14, intron 3 of 26) protein_coding-intron (ENSMUSG00000028532.14, intron 3 of 26) -81281 ENSMUSG00000028532.14 ENSMUSG00000028532 ENSMUST00000136430 Cachd1 protein_coding Interval_168807 chr9 87286545 87286854 + 0 NA Intergenic Intergenic -58741 ENSMUSG00000056919.9 ENSMUSG00000056919 ENSMUST00000144137 Cep162 protein_coding Interval_158091 chr8 78665992 78666202 + 0 NA intron (ENSMUSG00000031684.11, intron 6 of 10) protein_coding-intron (ENSMUSG00000031684.11, intron 6 of 11) 61803 ENSMUSG00000110244.1 ENSMUSG00000110244 ENSMUST00000211775 Gm2253 processed_pseudogene Interval_37330 chr12 65149326 65149658 + 0 NA exon (ENSMUSG00000047534.17, exon 8 of 14) protein_coding-exon (ENSMUSG00000047534.17, exon 8 of 14) 23106 ENSMUSG00000047534.17 ENSMUSG00000047534 ENSMUST00000131753 Mis18bp1 protein_coding Interval_13512 chr10 18906013 18906287 + 0 NA Intergenic Intergenic -19121 ENSMUSG00000111318.1 ENSMUSG00000111318 ENSMUST00000214387 Gm48483 lincRNA Interval_98951 chr2 156273753 156274460 + 0 NA intron (ENSMUSG00000038116.16, intron 7 of 16) protein_coding-intron (ENSMUSG00000038116.16, intron 8 of 17) 38641 ENSMUSG00000046229.10 ENSMUSG00000046229 ENSMUST00000079125 Scand1 protein_coding Interval_56066 chr14 105280289 105280519 + 0 NA intron (ENSMUSG00000053253.16, intron 1 of 7) protein_coding-intron (ENSMUSG00000053253.16, intron 1 of 7) -3418 ENSMUSG00000064715.1 ENSMUSG00000064715 ENSMUST00000082781 Gm24207 snRNA Interval_2215 chr1 37087647 37088111 + 0 NA intron (ENSMUSG00000050122.19, intron 8 of 26) protein_coding-intron (ENSMUSG00000050122.19, intron 7 of 24) 45385 ENSMUSG00000103603.1 ENSMUSG00000103603 ENSMUST00000195303 Gm37020 antisense Interval_55512 chr14 89716741 89717179 + 0 NA Intergenic Intergenic 10155 ENSMUSG00000077408.1 ENSMUSG00000077408 ENSMUST00000104220 Gm25415 snoRNA Interval_65578 chr16 23520292 23521061 + 0 NA promoter-TSS (ENSMUSG00000022887.9) protein_coding-promoter-TSS (ENSMUSG00000022887.9) -28 ENSMUSG00000022887.9 ENSMUSG00000022887 ENSMUST00000229152 Masp1 protein_coding Interval_91262 chr2 36911067 36912048 + 0 NA exon (ENSMUSG00000055088.5, exon 2 of 2) protein_coding-exon (ENSMUSG00000055088.5, exon 2 of 2) 2462 ENSMUSG00000081591.1 ENSMUSG00000081591 ENSMUST00000121665 Gm13440 processed_pseudogene Interval_64172 chr16 8829179 8831184 + 0 NA promoter-TSS (ENSMUSG00000022507.6) protein_coding-promoter-TSS (ENSMUSG00000022507.6) -1140 ENSMUSG00000022507.6 ENSMUSG00000022507 ENSMUST00000229318 1810013L24Rik protein_coding Interval_30664 chr11 95763422 95764106 + 0 NA exon (ENSMUSG00000075595.9, exon 5 of 5) protein_coding-exon (ENSMUSG00000075595.9, exon 5 of 5) 2273 ENSMUSG00000082981.1 ENSMUSG00000082981 ENSMUST00000120170 Polr2k-ps processed_pseudogene Interval_147434 chr7 67150701 67151032 + 0 NA exon (ENSMUSG00000058145.16, exon 23 of 23) protein_coding-exon (ENSMUSG00000058145.16, exon 23 of 23) -29234 ENSMUSG00000109273.1 ENSMUSG00000109273 ENSMUST00000208327 Gm45101 processed_pseudogene Interval_142591 chr6 143694793 143695053 + 0 NA Intergenic Intergenic -43635 ENSMUSG00000086887.1 ENSMUSG00000086887 ENSMUST00000150559 1700060C16Rik lincRNA Interval_131724 chr5 139510489 139511420 + 0 NA Intergenic Intergenic -12795 ENSMUSG00000106056.1 ENSMUSG00000106056 ENSMUST00000198000 4930500L23Rik lincRNA Interval_35809 chr12 30128491 30129172 + 0 NA intron (ENSMUSG00000020673.14, intron 1 of 3) protein_coding-intron (ENSMUSG00000020673.14, intron 2 of 16) 3068 ENSMUSG00000020673.14 ENSMUSG00000020673 ENSMUST00000155263 Tpo protein_coding Interval_169512 chr9 98640647 98641386 + 0 NA Intergenic Intergenic -39371 ENSMUSG00000032459.9 ENSMUSG00000032459 ENSMUST00000190150 Mrps22 protein_coding Interval_117046 chr4 119211521 119211745 + 0 NA intron (ENSMUSG00000028642.7, intron 3 of 6) protein_coding-intron (ENSMUSG00000028642.7, intron 3 of 6) 6584 ENSMUSG00000028642.7 ENSMUSG00000028642 ENSMUST00000030394 Tmem269 protein_coding Interval_96341 chr2 121787419 121788039 + 0 NA promoter-TSS (ENSMUSG00000027238.17) protein_coding-promoter-TSS (ENSMUSG00000027238.17) 69199 ENSMUSG00000084244.1 ENSMUSG00000084244 ENSMUST00000118165 Gm14020 processed_pseudogene Interval_157280 chr8 68983464 68984851 + 0 NA intron (ENSMUSG00000110594.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000110594.1, intron 1 of 1) 17526 ENSMUSG00000110594.1 ENSMUSG00000110594 ENSMUST00000212717 Gm33103 lincRNA Interval_123647 chr5 34261676 34261952 + 0 NA intron (ENSMUSG00000037224.15, intron 1 of 3) protein_coding-intron (ENSMUSG00000037224.15, intron 1 of 12) -26786 ENSMUSG00000109572.1 ENSMUSG00000109572 ENSMUST00000207754 Cfap99 protein_coding Interval_116351 chr4 110112328 110112978 + 0 NA Intergenic Intergenic 134600 ENSMUSG00000047143.3 ENSMUSG00000047143 ENSMUST00000061187 Dmrta2 protein_coding Interval_133002 chr5 149215325 149216387 + 0 NA TTS (ENSMUSG00000041264.16) protein_coding-TTS (ENSMUSG00000041264.16) -21298 ENSMUSG00000100783.1 ENSMUSG00000100783 ENSMUST00000189639 2310047D07Rik lincRNA Interval_71737 chr17 25784742 25785907 + 0 NA promoter-TSS (ENSMUSG00000061046.9) protein_coding-promoter-TSS (ENSMUSG00000061046.9) 14 ENSMUSG00000061046.9 ENSMUSG00000061046 ENSMUST00000145053 Haghl protein_coding Interval_526 chr1 7012466 7012778 + 0 NA Intergenic Intergenic -1140 ENSMUSG00000102213.1 ENSMUSG00000102213 ENSMUST00000191883 Gm37489 processed_pseudogene Interval_106732 chr3 100177387 100177639 + 0 NA intron (ENSMUSG00000027865.10, intron 3 of 12) protein_coding-intron (ENSMUSG00000027865.10, intron 3 of 13) -15116 ENSMUSG00000033285.15 ENSMUSG00000033285 ENSMUST00000197602 Wdr3 protein_coding Interval_3382 chr1 57754869 57755322 + 0 NA Intergenic Intergenic -19067 ENSMUSG00000038305.15 ENSMUSG00000038305 ENSMUST00000164353 Spats2l protein_coding Interval_101586 chr3 7332164 7332382 + 0 NA Intergenic Intergenic 86186 ENSMUSG00000103274.1 ENSMUSG00000103274 ENSMUST00000192071 Gm37918 processed_pseudogene Interval_76226 chr17 78199498 78201865 + 0 NA promoter-TSS (ENSMUSG00000117648.1) bidirectional_promoter_lncRNA-promoter-TSS (ENSMUSG00000117648.1) -656 ENSMUSG00000117648.1 ENSMUSG00000117648 ENSMUST00000234450 Gm32282 bidirectional_promoter_lncRNA Interval_122504 chr5 23470749 23470935 + 0 NA intron (ENSMUSG00000029004.15, intron 5 of 12) protein_coding-intron (ENSMUSG00000029004.15, intron 5 of 25) -7713 ENSMUSG00000029004.15 ENSMUSG00000029004 ENSMUST00000194010 Kmt2e protein_coding Interval_54491 chr14 70197477 70198637 + 0 NA intron (ENSMUSG00000022091.6, intron 7 of 21) protein_coding-intron (ENSMUSG00000022091.6, intron 5 of 20) -7267 ENSMUSG00000115186.1 ENSMUSG00000115186 ENSMUST00000226259 Gm49417 antisense Interval_135816 chr6 47526941 47527738 + 0 NA Intergenic Intergenic 7643 ENSMUSG00000029686.15 ENSMUSG00000029686 ENSMUST00000149531 Cul1 protein_coding Interval_22387 chr11 9382002 9383022 + 0 NA intron (ENSMUSG00000004668.14, intron 31 of 61) protein_coding-intron (ENSMUSG00000004668.14, intron 31 of 61) 189061 ENSMUSG00000004668.14 ENSMUSG00000004668 ENSMUST00000151522 Abca13 protein_coding Interval_75769 chr17 71192858 71193214 + 0 NA intron (ENSMUSG00000024052.17, intron 1 of 19) protein_coding-intron (ENSMUSG00000024052.17, intron 1 of 19) 9480 ENSMUSG00000024052.17 ENSMUSG00000024052 ENSMUST00000125665 Lpin2 protein_coding Interval_24810 chr11 39278526 39279261 + 0 NA Intergenic Intergenic 448819 ENSMUSG00000083806.1 ENSMUSG00000083806 ENSMUST00000117479 Gm12131 processed_pseudogene Interval_118619 chr4 132801429 132803437 + 0 NA promoter-TSS (ENSMUSG00000081647.1) processed_pseudogene-promoter-TSS (ENSMUSG00000081647.1) -179 ENSMUSG00000081647.1 ENSMUSG00000081647 ENSMUST00000121181 Gm13022 processed_pseudogene Interval_61733 chr15 83638649 83638996 + 0 NA intron (ENSMUSG00000016763.15, intron 4 of 19) protein_coding-intron (ENSMUSG00000016763.15, intron 7 of 22) -25083 ENSMUSG00000016763.15 ENSMUSG00000016763 ENSMUST00000229057 Scube1 protein_coding Interval_101881 chr3 10359793 10359987 + 0 NA Intergenic Intergenic -7068 ENSMUSG00000027536.6 ENSMUSG00000027536 ENSMUST00000191826 Chmp4c protein_coding Interval_87669 chr19 54127624 54127905 + 0 NA Intergenic Intergenic 43205 ENSMUSG00000117921.1 ENSMUSG00000117921 ENSMUST00000236398 Gm50186 lincRNA Interval_17541 chr10 77611133 77611730 + 0 NA intron (ENSMUSG00000020265.16, intron 1 of 1) protein_coding-intron (ENSMUSG00000020265.16, intron 2 of 3) -3702 ENSMUSG00000020265.16 ENSMUSG00000020265 ENSMUST00000174295 Sumo3 protein_coding Interval_123740 chr5 35079024 35080157 + 0 NA exon (ENSMUSG00000044716.12, exon 6 of 9) protein_coding-exon (ENSMUSG00000044716.12, exon 6 of 9) 4632 ENSMUSG00000044716.12 ENSMUSG00000044716 ENSMUST00000155097 Dok7 protein_coding Interval_42855 chr13 20448539 20448726 + 0 NA intron (ENSMUSG00000113313.1, intron 2 of 2) protein_coding-intron (ENSMUSG00000041112.17, intron 15 of 21) 24858 ENSMUSG00000113313.1 ENSMUSG00000113313 ENSMUST00000221484 Gm32036 antisense Interval_110882 chr4 9493595 9494399 + 0 NA intron (ENSMUSG00000028207.18, intron 19 of 22) protein_coding-intron (ENSMUSG00000028207.18, intron 20 of 23) -46798 ENSMUSG00000087564.1 ENSMUSG00000087564 ENSMUST00000155578 Gm11817 antisense Interval_18887 chr10 92509042 92509239 + 0 NA Intergenic Intergenic 22322 ENSMUSG00000088407.1 ENSMUSG00000088407 ENSMUST00000157782 Gm25884 snRNA Interval_85043 chr19 21756718 21757023 + 0 NA Intergenic Intergenic -21518 ENSMUSG00000024754.13 ENSMUSG00000024754 ENSMUST00000238079 Cemip2 protein_coding Interval_94893 chr2 101026522 101026714 + 0 NA Intergenic Intergenic -398575 ENSMUSG00000095203.1 ENSMUSG00000095203 ENSMUST00000118584 Gm13810 processed_pseudogene Interval_156578 chr8 52899956 52900403 + 0 NA Intergenic Intergenic -106229 ENSMUSG00000088678.1 ENSMUSG00000088678 ENSMUST00000158053 Gm23666 snoRNA Interval_114267 chr4 70332025 70333326 + 0 NA intron (ENSMUSG00000039298.16, intron 9 of 33) protein_coding-intron (ENSMUSG00000039298.16, intron 9 of 33) 77768 ENSMUSG00000039298.16 ENSMUSG00000039298 ENSMUST00000126416 Cdk5rap2 protein_coding Interval_73794 chr17 43706888 43707653 + 0 NA intron (ENSMUSG00000023963.10, intron 7 of 10) protein_coding-intron (ENSMUSG00000023963.10, intron 7 of 11) 8907 ENSMUSG00000084474.1 ENSMUSG00000084474 ENSMUST00000122525 Gm25783 snRNA Interval_42195 chr13 9755904 9756630 + 0 NA exon (ENSMUSG00000113650.1, exon 1 of 1) TEC-exon (ENSMUSG00000113650.1, exon 1 of 1) 612 ENSMUSG00000113650.1 ENSMUSG00000113650 ENSMUST00000221759 Gm47826 TEC Interval_105551 chr3 87630956 87631801 + 0 NA intron (ENSMUSG00000041977.18, intron 1 of 38) protein_coding-intron (ENSMUSG00000041977.18, intron 1 of 39) 12617 ENSMUSG00000041977.18 ENSMUSG00000041977 ENSMUST00000212015 Arhgef11 protein_coding Interval_69388 chr16 92630427 92630594 + 0 NA intron (ENSMUSG00000022952.17, intron 3 of 4) protein_coding-intron (ENSMUSG00000022952.17, intron 6 of 7) 17696 ENSMUSG00000097139.3 ENSMUSG00000097139 ENSMUST00000180989 Gm26626 antisense Interval_113024 chr4 46989759 46993068 + 0 NA exon (ENSMUSG00000039809.10, exon 1 of 19) protein_coding-exon (ENSMUSG00000039809.10, exon 1 of 19) 19368 ENSMUSG00000048824.7 ENSMUSG00000048824 ENSMUST00000135777 Gm568 lincRNA Interval_54346 chr14 67834313 67835329 + 0 NA intron (ENSMUSG00000044447.5, intron 10 of 17) protein_coding-intron (ENSMUSG00000044447.5, intron 10 of 51) 24924 ENSMUSG00000098866.1 ENSMUSG00000098866 ENSMUST00000183732 Mir6539 miRNA Interval_83974 chr19 5883554 5884919 + 0 NA intron (ENSMUSG00000024818.15, intron 3 of 4) protein_coding-intron (ENSMUSG00000024818.15, intron 4 of 5) 6375 ENSMUSG00000024818.15 ENSMUSG00000024818 ENSMUST00000141362 Slc25a45 protein_coding Interval_126972 chr5 98706802 98707034 + 0 NA intron (ENSMUSG00000057816.7, intron 4 of 6) protein_coding-intron (ENSMUSG00000057816.7, intron 3 of 5) -139992 ENSMUSG00000067101.5 ENSMUSG00000067101 ENSMUST00000086912 1700010H22Rik lincRNA Interval_41695 chr12 117819919 117821323 + 0 NA intron (ENSMUSG00000021175.15, intron 1 of 4) protein_coding-intron (ENSMUSG00000021175.15, intron 1 of 4) 13730 ENSMUSG00000093544.1 ENSMUSG00000093544 ENSMUST00000175828 Gm20613 processed_pseudogene Interval_131505 chr5 137620617 137621159 + 0 NA intron (ENSMUSG00000089984.7, intron 3 of 6) protein_coding-intron (ENSMUSG00000089984.7, intron 5 of 9) 5261 ENSMUSG00000081228.1 ENSMUSG00000081228 ENSMUST00000117679 Gm16089 processed_pseudogene Interval_148664 chr7 83965902 83966339 + 0 NA intron (ENSMUSG00000052353.13, intron 13 of 23) protein_coding-intron (ENSMUSG00000052353.13, intron 13 of 28) 71067 ENSMUSG00000038503.15 ENSMUSG00000038503 ENSMUST00000207373 Mesd protein_coding Interval_141624 chr6 131418915 131419830 + 0 NA Intergenic Intergenic 14539 ENSMUSG00000107832.1 ENSMUSG00000107832 ENSMUST00000204695 Gm18688 processed_pseudogene Interval_139061 chr6 94684546 94685473 + 0 NA intron (ENSMUSG00000030029.14, intron 1 of 19) protein_coding-intron (ENSMUSG00000030029.14, intron 1 of 19) 15149 ENSMUSG00000030029.14 ENSMUSG00000030029 ENSMUST00000124165 Lrig1 protein_coding Interval_107467 chr3 107909864 107910193 + 0 NA exon (ENSMUSG00000105872.1, exon 4 of 8) unprocessed_pseudogene-exon (ENSMUSG00000105872.1, exon 4 of 8) 1221 ENSMUSG00000105872.1 ENSMUSG00000105872 ENSMUST00000200276 Gm9515 unprocessed_pseudogene Interval_79003 chr18 23858951 23860154 + 0 NA exon (ENSMUSG00000024277.14, exon 5 of 5) protein_coding-exon (ENSMUSG00000024277.14, exon 5 of 5) -42181 ENSMUSG00000089290.1 ENSMUSG00000089290 ENSMUST00000158665 Gm23207 snRNA Interval_75142 chr17 63930232 63931845 + 0 NA intron (ENSMUSG00000000127.15, intron 6 of 17) protein_coding-intron (ENSMUSG00000000127.15, intron 6 of 17) -67247 ENSMUSG00000045506.3 ENSMUSG00000045506 ENSMUST00000050753 A930002H24Rik protein_coding Interval_39123 chr12 85269979 85272154 + 0 NA promoter-TSS (ENSMUSG00000021245.15) protein_coding-promoter-TSS (ENSMUSG00000021245.15) -3273 ENSMUSG00000045064.5 ENSMUSG00000045064 ENSMUST00000059341 Zc2hc1c protein_coding Interval_64131 chr16 8623137 8624002 + 0 NA promoter-TSS (ENSMUSG00000076039.1) miRNA-promoter-TSS (ENSMUSG00000076039.1) 151 ENSMUSG00000083505.1 ENSMUSG00000083505 ENSMUST00000118361 Gm7541 processed_pseudogene Interval_48700 chr13 101659088 101659526 + 0 NA Intergenic Intergenic 33036 ENSMUSG00000041417.15 ENSMUSG00000041417 ENSMUST00000189426 Pik3r1 protein_coding Interval_124004 chr5 37109271 37110012 + 0 NA intron (ENSMUSG00000117286.1, intron 7 of 33) protein_coding-intron (ENSMUSG00000063646.18, intron 8 of 12) -3886 ENSMUSG00000063646.18 ENSMUSG00000063646 ENSMUST00000208852 Jakmip1 protein_coding Interval_113428 chr4 54956926 54957271 + 0 NA intron (ENSMUSG00000060206.11, intron 1 of 12) protein_coding-intron (ENSMUSG00000060206.11, intron 1 of 12) 12050 ENSMUSG00000060206.11 ENSMUSG00000060206 ENSMUST00000079605 Zfp462 protein_coding Interval_104660 chr3 69195295 69195507 + 0 NA Intergenic Intergenic -27018 ENSMUSG00000098207.1 ENSMUSG00000098207 ENSMUST00000183126 Arl14 protein_coding Interval_69653 chr16 94889394 94890048 + 0 NA intron (ENSMUSG00000043301.16, intron 2 of 3) protein_coding-intron (ENSMUSG00000043301.16, intron 2 of 4) 20257 ENSMUSG00000095435.1 ENSMUSG00000095435 ENSMUST00000175509 Gm22745 miRNA Interval_50061 chr14 6939799 6940378 + 0 NA Intergenic Intergenic -16857 ENSMUSG00000114950.1 ENSMUSG00000114950 ENSMUST00000224863 Gm47747 processed_pseudogene Interval_160387 chr8 108881569 108881849 + 0 NA intron (ENSMUSG00000038872.10, intron 10 of 15) protein_coding-intron (ENSMUSG00000038872.10, intron 4 of 9) 14147 ENSMUSG00000102989.1 ENSMUSG00000102989 ENSMUST00000195769 Gm38318 TEC Interval_1593 chr1 28622609 28623163 + 0 NA Intergenic Intergenic -42114 ENSMUSG00000086240.4 ENSMUSG00000086240 ENSMUST00000145844 Gm7846 processed_pseudogene Interval_95222 chr2 104887598 104888141 + 0 NA intron (ENSMUSG00000045106.12, intron 1 of 17) protein_coding-intron (ENSMUSG00000045106.12, intron 1 of 17) 12667 ENSMUSG00000082934.1 ENSMUSG00000082934 ENSMUST00000119009 Gm13887 processed_pseudogene Interval_88118 chr19 59359969 59360590 + 0 NA Intergenic Intergenic -14499 ENSMUSG00000074746.3 ENSMUSG00000074746 ENSMUST00000099274 Pdzd8 protein_coding Interval_44958 chr13 50933969 50934668 + 0 NA Intergenic Intergenic -74162 ENSMUSG00000113509.1 ENSMUSG00000113509 ENSMUST00000223072 Gm19009 processed_pseudogene Interval_29634 chr11 85686261 85686516 + 0 NA intron (ENSMUSG00000059439.15, intron 1 of 4) protein_coding-intron (ENSMUSG00000059439.15, intron 23 of 24) 33356 ENSMUSG00000086199.7 ENSMUSG00000086199 ENSMUST00000146806 Bcas3os1 antisense Interval_76187 chr17 76499432 76500731 + 0 NA Intergenic Intergenic -160886 ENSMUSG00000117598.1 ENSMUSG00000117598 ENSMUST00000234248 Gm50028 lincRNA Interval_41145 chr12 111480059 111480489 + 0 NA intron (ENSMUSG00000113029.1, intron 2 of 2) antisense-intron (ENSMUSG00000113029.1, intron 2 of 2) 5549 ENSMUSG00000010529.6 ENSMUSG00000010529 ENSMUST00000010673 Gm266 protein_coding Interval_156513 chr8 48973626 48974573 + 0 NA Intergenic Intergenic -15618 ENSMUSG00000089548.1 ENSMUSG00000089548 ENSMUST00000158923 Gm25830 snoRNA Interval_77074 chr17 86236386 86236735 + 0 NA intron (ENSMUSG00000045038.14, intron 1 of 14) protein_coding-intron (ENSMUSG00000045038.14, intron 2 of 15) 50618 ENSMUSG00000100738.1 ENSMUSG00000100738 ENSMUST00000191222 2010106C02Rik antisense Interval_144719 chr7 27756992 27757209 + 0 NA Intergenic Intergenic -13405 ENSMUSG00000109143.1 ENSMUSG00000109143 ENSMUST00000208942 Gm10046 transcribed_unprocessed_pseudogene Interval_56050 chr14 105146984 105147345 + 0 NA intron (ENSMUSG00000022119.15, intron 9 of 21) protein_coding-intron (ENSMUSG00000022119.15, intron 9 of 21) -16827 ENSMUSG00000022119.15 ENSMUSG00000022119 ENSMUST00000163499 Rbm26 protein_coding Interval_64517 chr16 13013414 13015107 + 0 NA Intergenic Intergenic -62797 ENSMUSG00000116170.1 ENSMUSG00000116170 ENSMUST00000230534 Gm6332 processed_pseudogene Interval_10261 chr1 167649688 167649959 + 0 NA Intergenic Intergenic -39414 ENSMUSG00000026686.14 ENSMUSG00000026686 ENSMUST00000028003 Lmx1a protein_coding Interval_132356 chr5 144418366 144419027 + 0 NA intron (ENSMUSG00000047843.16, intron 3 of 3) protein_coding-intron (ENSMUSG00000047843.16, intron 3 of 3) 12094 ENSMUSG00000083574.1 ENSMUSG00000083574 ENSMUST00000118354 Gm15709 processed_pseudogene Interval_59336 chr15 51765218 51765474 + 0 NA Intergenic Intergenic 70911 ENSMUSG00000022312.11 ENSMUSG00000022312 ENSMUST00000228583 Eif3h protein_coding Interval_23773 chr11 26097895 26099612 + 0 NA intron (ENSMUSG00000032985.15, intron 1 of 5) protein_coding-intron (ENSMUSG00000032985.15, intron 1 of 6) -103487 ENSMUSG00000099015.1 ENSMUSG00000099015 ENSMUST00000185114 Mir6372 miRNA Interval_61920 chr15 85249185 85249598 + 0 NA intron (ENSMUSG00000006369.14, intron 14 of 16) protein_coding-intron (ENSMUSG00000006369.14, intron 14 of 16) -14063 ENSMUSG00000006369.14 ENSMUSG00000006369 ENSMUST00000160798 Fbln1 protein_coding Interval_4885 chr1 81443758 81444720 + 0 NA Intergenic Intergenic 78102 ENSMUSG00000104029.1 ENSMUSG00000104029 ENSMUST00000192484 Gm37210 TEC Interval_166870 chr9 63508860 63509716 + 0 NA intron (ENSMUSG00000037801.13, intron 11 of 20) protein_coding-intron (ENSMUSG00000037801.13, intron 12 of 21) -65213 ENSMUSG00000091866.1 ENSMUSG00000091866 ENSMUST00000163864 Gm6257 processed_pseudogene Interval_79301 chr18 30272504 30273612 + 0 NA TTS (ENSMUSG00000117465.1) lincRNA-TTS (ENSMUSG00000117465.1) 131 ENSMUSG00000033628.15 ENSMUSG00000033628 ENSMUST00000131405 Pik3c3 protein_coding Interval_4202 chr1 71602322 71603642 + 0 NA promoter-TSS (ENSMUSG00000026193.15) protein_coding-promoter-TSS (ENSMUSG00000026193.15) 45803 ENSMUSG00000026192.13 ENSMUSG00000026192 ENSMUST00000154855 Atic protein_coding Interval_80016 chr18 36657070 36658131 + 0 NA intron (ENSMUSG00000024483.19, intron 32 of 33) protein_coding-intron (ENSMUSG00000024483.19, intron 32 of 33) -6460 ENSMUSG00000090264.1 ENSMUSG00000090264 ENSMUST00000036765 Eif4ebp3 protein_coding Interval_168487 chr9 82314698 82314864 + 0 NA Intergenic Intergenic 54488 ENSMUSG00000099266.1 ENSMUSG00000099266 ENSMUST00000183678 1700063H06Rik lincRNA Interval_74187 chr17 46974869 46975599 + 0 NA intron (ENSMUSG00000023977.15, intron 13 of 28) protein_coding-intron (ENSMUSG00000023977.15, intron 13 of 46) 17682 ENSMUSG00000084572.1 ENSMUSG00000084572 ENSMUST00000122623 Gm23657 misc_RNA Interval_49886 chr13 117776997 117777260 + 0 NA intron (ENSMUSG00000021730.8, intron 2 of 7) protein_coding-intron (ENSMUSG00000021730.8, intron 2 of 7) -57117 ENSMUSG00000079048.8 ENSMUSG00000079048 ENSMUST00000110292 4933413L06Rik antisense Interval_85006 chr19 21287925 21288182 + 0 NA Intergenic Intergenic 15775 ENSMUSG00000024750.11 ENSMUSG00000024750 ENSMUST00000133175 Zfand5 protein_coding Interval_27521 chr11 68379514 68379885 + 0 NA intron (ENSMUSG00000020902.12, intron 3 of 7) protein_coding-intron (ENSMUSG00000020902.12, intron 2 of 6) 7313 ENSMUSG00000020902.12 ENSMUSG00000020902 ENSMUST00000135141 Ntn1 protein_coding Interval_145089 chr7 29970391 29971269 + 0 NA TTS (ENSMUSG00000063623.4) transcribed_unprocessed_pseudogene-TTS (ENSMUSG00000063623.4) -5265 ENSMUSG00000083669.5 ENSMUSG00000083669 ENSMUST00000121822 Mif-ps processed_pseudogene Interval_100206 chr2 167631312 167632505 + 0 NA promoter-TSS (ENSMUSG00000078923.10) protein_coding-promoter-TSS (ENSMUSG00000078923.10) 79 ENSMUSG00000078923.10 ENSMUSG00000078923 ENSMUST00000144830 Ube2v1 protein_coding Interval_63551 chr15 101988251 101988581 + 0 NA Intergenic Intergenic -15796 ENSMUSG00000116010.1 ENSMUSG00000116010 ENSMUST00000230247 Gm36026 lincRNA Interval_128856 chr5 115622693 115623854 + 0 NA TTS (ENSMUSG00000041638.18) protein_coding-TTS (ENSMUSG00000041638.18) 8543 ENSMUSG00000107121.1 ENSMUSG00000107121 ENSMUST00000201728 1110006O24Rik lincRNA Interval_166595 chr9 61170304 61170555 + 0 NA Intergenic Intergenic 31914 ENSMUSG00000110998.1 ENSMUSG00000110998 ENSMUST00000216012 I730028E13Rik lincRNA Interval_44861 chr13 49169661 49170283 + 0 NA Intergenic Intergenic -20324 ENSMUSG00000037966.15 ENSMUSG00000037966 ENSMUST00000153819 Ninj1 protein_coding Interval_21977 chr11 5512648 5513777 + 0 NA Intergenic Intergenic -7783 ENSMUSG00000020484.19 ENSMUSG00000020484 ENSMUST00000149159 Xbp1 protein_coding Interval_166247 chr9 57780301 57780878 + 0 NA intron (ENSMUSG00000091908.7, intron 1 of 3) antisense-intron (ENSMUSG00000091908.7, intron 1 of 3) 2724 ENSMUSG00000091908.7 ENSMUSG00000091908 ENSMUST00000163186 Gm17231 antisense Interval_24449 chr11 33336210 33337112 + 0 NA intron (ENSMUSG00000040594.19, intron 14 of 27) protein_coding-intron (ENSMUSG00000040594.19, intron 14 of 27) 58605 ENSMUSG00000069913.3 ENSMUSG00000069913 ENSMUST00000118265 Anp32-ps processed_pseudogene Interval_96407 chr2 122256270 122256598 + 0 NA intron (ENSMUSG00000027227.7, intron 4 of 8) protein_coding-intron (ENSMUSG00000027227.7, intron 4 of 8) 21685 ENSMUSG00000027227.7 ENSMUSG00000027227 ENSMUST00000110551 Sord protein_coding Interval_96246 chr2 120914258 120914434 + 0 NA intron (ENSMUSG00000027272.5, intron 1 of 5) protein_coding-intron (ENSMUSG00000027272.5, intron 25 of 46) 15996 ENSMUSG00000027272.5 ENSMUSG00000027272 ENSMUST00000138824 Ubr1 protein_coding Interval_74767 chr17 56416701 56417682 + 0 NA intron (ENSMUSG00000013236.17, intron 22 of 27) protein_coding-intron (ENSMUSG00000013236.17, intron 27 of 32) 1718 ENSMUSG00000098339.1 ENSMUSG00000098339 ENSMUST00000184960 Mir6977 miRNA Interval_85143 chr19 23147412 23147730 + 0 NA intron (ENSMUSG00000033863.2, intron 1 of 1) protein_coding-intron (ENSMUSG00000033863.2, intron 1 of 1) -1860 ENSMUSG00000080626.1 ENSMUSG00000080626 ENSMUST00000116976 Mir1192 miRNA Interval_99278 chr2 158615287 158615597 + 0 NA exon (ENSMUSG00000037771.11, exon 2 of 2) protein_coding-exon (ENSMUSG00000037771.11, exon 2 of 2) -3622 ENSMUSG00000087563.1 ENSMUSG00000087563 ENSMUST00000138427 Gm14205 antisense Interval_80676 chr18 46216012 46216284 + 0 NA Intergenic Intergenic 17127 ENSMUSG00000103616.1 ENSMUSG00000103616 ENSMUST00000195587 1700018A14Rik TEC Interval_10222 chr1 167289650 167290445 + 0 NA promoter-TSS (ENSMUSG00000098379.1) miRNA-promoter-TSS (ENSMUSG00000098379.1) -78 ENSMUSG00000098379.1 ENSMUSG00000098379 ENSMUST00000184939 Mir6347 miRNA Interval_129280 chr5 118644245 118645641 + 0 NA exon (ENSMUSG00000107116.1, exon 1 of 1) TEC-exon (ENSMUSG00000107116.1, exon 1 of 1) 570 ENSMUSG00000107116.1 ENSMUSG00000107116 ENSMUST00000202545 Gm43274 TEC Interval_99654 chr2 163968739 163969195 + 0 NA Intergenic Intergenic -26536 ENSMUSG00000018326.9 ENSMUSG00000018326 ENSMUST00000131288 Ywhab protein_coding Interval_37108 chr12 58472917 58475528 + 0 NA Intergenic Intergenic -204932 ENSMUSG00000045930.3 ENSMUSG00000045930 ENSMUST00000062254 Clec14a protein_coding Interval_44436 chr13 44833368 44833832 + 0 NA intron (ENSMUSG00000038518.15, intron 2 of 3) protein_coding-intron (ENSMUSG00000038518.15, intron 3 of 18) 4683 ENSMUSG00000088189.1 ENSMUSG00000088189 ENSMUST00000157564 Gm22213 snoRNA Interval_42750 chr13 18972130 18972415 + 0 NA exon (ENSMUSG00000113576.1, exon 2 of 3) antisense-exon (ENSMUSG00000113576.1, exon 2 of 3) -1188 ENSMUSG00000113993.1 ENSMUSG00000113993 ENSMUST00000222229 Gm47659 processed_pseudogene Interval_29754 chr11 86585955 86587618 + 0 NA promoter-TSS (ENSMUSG00000018171.9) protein_coding-promoter-TSS (ENSMUSG00000018171.9) -2628 ENSMUSG00000065455.1 ENSMUSG00000065455 ENSMUST00000083521 Mir21a miRNA Interval_6586 chr1 117683085 117684362 + 0 NA Intergenic Intergenic -13408 ENSMUSG00000100265.1 ENSMUSG00000100265 ENSMUST00000186341 Gm28363 protein_coding Interval_113046 chr4 47181484 47181885 + 0 NA Intergenic Intergenic 10015 ENSMUSG00000083491.1 ENSMUSG00000083491 ENSMUST00000118334 Gm12423 processed_pseudogene Interval_79551 chr18 33657548 33657801 + 0 NA Intergenic Intergenic 81206 ENSMUSG00000117689.1 ENSMUSG00000117689 ENSMUST00000237469 Gm50392 processed_pseudogene Interval_99454 chr2 161268945 161269159 + 0 NA Intergenic Intergenic -13595 ENSMUSG00000081099.2 ENSMUSG00000081099 ENSMUST00000121506 Gm5270 processed_pseudogene Interval_132579 chr5 146431968 146432288 + 0 NA intron (ENSMUSG00000029636.11, intron 2 of 9) protein_coding-intron (ENSMUSG00000029636.11, intron 2 of 9) -23481 ENSMUSG00000029636.11 ENSMUSG00000029636 ENSMUST00000238592 Wasf3 protein_coding Interval_96656 chr2 126910022 126911386 + 0 NA intron (ENSMUSG00000027366.12, intron 7 of 9) protein_coding-intron (ENSMUSG00000027366.12, intron 12 of 14) -8319 ENSMUSG00000098896.1 ENSMUSG00000098896 ENSMUST00000183494 Mir3473g miRNA Interval_24631 chr11 35451629 35452864 + 0 NA intron (ENSMUSG00000056427.10, intron 2 of 3) protein_coding-intron (ENSMUSG00000056427.10, intron 4 of 35) 102177 ENSMUSG00000086311.1 ENSMUSG00000086311 ENSMUST00000124503 Gm12122 sense_intronic Interval_166570 chr9 60987873 60988332 + 0 NA Intergenic Intergenic -28967 ENSMUSG00000111290.1 ENSMUSG00000111290 ENSMUST00000216854 Gm5122 lincRNA Interval_22314 chr11 8692576 8694605 + 0 NA Intergenic Intergenic -28909 ENSMUSG00000020422.14 ENSMUSG00000020422 ENSMUST00000134823 Tns3 protein_coding Interval_142379 chr6 141149091 141149468 + 0 NA Intergenic Intergenic 11232 ENSMUSG00000107462.1 ENSMUSG00000107462 ENSMUST00000203682 Gm7384 processed_pseudogene Interval_29105 chr11 80364376 80364636 + 0 NA intron (ENSMUSG00000057181.15, intron 9 of 9) protein_coding-intron (ENSMUSG00000057181.15, intron 9 of 9) 13509 ENSMUSG00000057181.15 ENSMUSG00000057181 ENSMUST00000134274 5730455P16Rik protein_coding Interval_132155 chr5 142999056 142999424 + 0 NA intron (ENSMUSG00000045078.12, intron 15 of 16) protein_coding-intron (ENSMUSG00000045078.12, intron 15 of 16) 38864 ENSMUSG00000029581.14 ENSMUSG00000029581 ENSMUST00000135293 Fscn1 protein_coding Interval_96470 chr2 124255074 124256532 + 0 NA intron (ENSMUSG00000027200.17, intron 1 of 4) protein_coding-intron (ENSMUSG00000027200.17, intron 2 of 20) -33472 ENSMUSG00000086954.1 ENSMUSG00000086954 ENSMUST00000136658 4930583P06Rik lincRNA Interval_124897 chr5 59848196 59850209 + 0 NA Intergenic Intergenic 71290 ENSMUSG00000104889.1 ENSMUSG00000104889 ENSMUST00000196579 Gm43043 processed_pseudogene Interval_25739 chr11 51245674 51245928 + 0 NA Intergenic Intergenic 10463 ENSMUSG00000045942.13 ENSMUSG00000045942 ENSMUST00000231433 BC049762 protein_coding Interval_84036 chr19 6884511 6884763 + 0 NA Intergenic Intergenic 24893 ENSMUSG00000024953.17 ENSMUSG00000024953 ENSMUST00000173091 Prdx5 protein_coding Interval_3057 chr1 52753273 52753490 + 0 NA Intergenic Intergenic -3338 ENSMUSG00000100230.1 ENSMUSG00000100230 ENSMUST00000188413 Gm28650 processed_pseudogene Interval_43614 chr13 34116492 34116865 + 0 NA Intergenic Intergenic -3023 ENSMUSG00000113645.1 ENSMUSG00000113645 ENSMUST00000221366 Gm47076 lincRNA Interval_137299 chr6 71164006 71165024 + 0 NA promoter-TSS (ENSMUSG00000108206.1) lincRNA-promoter-TSS (ENSMUSG00000108206.1) -284 ENSMUSG00000108206.1 ENSMUSG00000108206 ENSMUST00000204123 Gm44427 lincRNA Interval_38824 chr12 82947616 82948065 + 0 NA intron (ENSMUSG00000021219.16, intron 2 of 16) protein_coding-intron (ENSMUSG00000021219.16, intron 1 of 14) -8685 ENSMUSG00000100890.1 ENSMUSG00000100890 ENSMUST00000187123 1700085C21Rik antisense Interval_94096 chr2 83896426 83896727 + 0 NA Intergenic Intergenic 27103 ENSMUSG00000034552.8 ENSMUSG00000034552 ENSMUST00000155127 Zswim2 protein_coding Interval_24409 chr11 33059694 33060615 + 0 NA Intergenic Intergenic -8397 ENSMUSG00000087318.1 ENSMUSG00000087318 ENSMUST00000147896 Gm12114 lincRNA Interval_158271 chr8 80738375 80740178 + 0 NA exon (ENSMUSG00000031715.14, exon 1 of 24) protein_coding-exon (ENSMUSG00000031715.14, exon 1 of 24) -10139 ENSMUSG00000110142.1 ENSMUSG00000110142 ENSMUST00000209804 Gm45872 TEC Interval_103997 chr3 56827023 56827936 + 0 NA TTS (ENSMUSG00000105113.1) processed_pseudogene-TTS (ENSMUSG00000105113.1) 1308 ENSMUSG00000105113.1 ENSMUSG00000105113 ENSMUST00000200018 Gm2622 processed_pseudogene Interval_154785 chr8 23349100 23349959 + 0 NA Intergenic Intergenic -59365 ENSMUSG00000077399.1 ENSMUSG00000077399 ENSMUST00000104211 Gm24335 snoRNA Interval_92512 chr2 60232747 60233485 + 0 NA intron (ENSMUSG00000026977.17, intron 4 of 8) protein_coding-intron (ENSMUSG00000026977.17, intron 4 of 9) 23203 ENSMUSG00000026977.17 ENSMUSG00000026977 ENSMUST00000136367 Marchf7 protein_coding Interval_33109 chr11 114492454 114493411 + 0 NA Intergenic Intergenic -44072 ENSMUSG00000062391.3 ENSMUSG00000062391 ENSMUST00000141088 4932435O22Rik lincRNA Interval_110079 chr3 153084177 153085558 + 0 NA Intergenic Intergenic 97948 ENSMUSG00000105337.4 ENSMUSG00000105337 ENSMUST00000197695 1700094M23Rik lincRNA Interval_77113 chr17 86668057 86669077 + 0 NA Intergenic Intergenic 16929 ENSMUSG00000117568.1 ENSMUSG00000117568 ENSMUST00000234033 Gm18832 processed_pseudogene Interval_30061 chr11 88948567 88949185 + 0 NA intron (ENSMUSG00000000278.10, intron 2 of 12) protein_coding-intron (ENSMUSG00000000278.10, intron 2 of 12) 6589 ENSMUSG00000000278.10 ENSMUSG00000000278 ENSMUST00000000287 Scpep1 protein_coding Interval_170856 chr9 111252058 111252972 + 0 NA intron (ENSMUSG00000032498.9, intron 8 of 17) protein_coding-intron (ENSMUSG00000032498.9, intron 9 of 18) -7648 ENSMUSG00000089082.1 ENSMUSG00000089082 ENSMUST00000158457 Gm24860 misc_RNA Interval_72217 chr17 28628038 28630151 + 0 NA Intergenic Intergenic -6611 ENSMUSG00000004865.16 ENSMUSG00000004865 ENSMUST00000114767 Srpk1 protein_coding Interval_47413 chr13 83715035 83715808 + 0 NA Intergenic Intergenic 14161 ENSMUSG00000097265.1 ENSMUSG00000097265 ENSMUST00000181705 Gm26803 lincRNA Interval_70447 chr17 10284794 10285576 + 0 NA intron (ENSMUSG00000062078.15, intron 1 of 6) protein_coding-intron (ENSMUSG00000062078.15, intron 1 of 6) 34176 ENSMUSG00000062078.15 ENSMUSG00000062078 ENSMUST00000233684 Qk protein_coding Interval_96627 chr2 126618481 126619936 + 0 NA promoter-TSS (ENSMUSG00000027360.5) protein_coding-promoter-TSS (ENSMUSG00000027360.5) 91 ENSMUSG00000027360.5 ENSMUSG00000027360 ENSMUST00000148591 Hdc protein_coding Interval_139592 chr6 101885178 101885504 + 0 NA Intergenic Intergenic -27932 ENSMUSG00000107421.1 ENSMUSG00000107421 ENSMUST00000204338 Gm44177 TEC Interval_144371 chr7 24735997 24736470 + 0 NA Intergenic Intergenic -6108 ENSMUSG00000108404.1 ENSMUSG00000108404 ENSMUST00000206419 Gm44972 processed_pseudogene Interval_119976 chr4 141194779 141195192 + 0 NA intron (ENSMUSG00000028920.9, intron 3 of 3) protein_coding-intron (ENSMUSG00000028920.9, intron 5 of 9) -23661 ENSMUSG00000073733.4 ENSMUSG00000073733 ENSMUST00000151475 Cplane2 protein_coding Interval_71546 chr17 24480629 24481517 + 0 NA Intergenic Intergenic -2018 ENSMUSG00000024142.15 ENSMUSG00000024142 ENSMUST00000234032 Mlst8 protein_coding Interval_140397 chr6 117835449 117835696 + 0 NA Intergenic Intergenic -5682 ENSMUSG00000059689.15 ENSMUSG00000059689 ENSMUST00000132644 Zfp637 protein_coding Interval_34077 chr11 120373015 120373521 + 0 NA exon (ENSMUSG00000025384.15, exon 4 of 4) protein_coding-exon (ENSMUSG00000025384.15, exon 4 of 4) 5468 ENSMUSG00000025384.15 ENSMUSG00000025384 ENSMUST00000152346 Faap100 protein_coding Interval_103868 chr3 53878210 53878425 + 0 NA Intergenic Intergenic -14555 ENSMUSG00000027746.13 ENSMUSG00000027746 ENSMUST00000152414 Ufm1 protein_coding Interval_52896 chr14 51911405 51911970 + 0 NA intron (ENSMUSG00000004558.15, intron 1 of 9) protein_coding-intron (ENSMUSG00000004558.15, intron 1 of 15) 1693 ENSMUSG00000004558.15 ENSMUSG00000004558 ENSMUST00000228173 Ndrg2 protein_coding Interval_88457 chr2 5299025 5299225 + 0 NA intron (ENSMUSG00000039145.16, intron 10 of 10) protein_coding-intron (ENSMUSG00000039145.16, intron 10 of 10) 15475 ENSMUSG00000080820.1 ENSMUSG00000080820 ENSMUST00000117204 Gm13197 processed_pseudogene Interval_130434 chr5 127594509 127594950 + 0 NA TTS (ENSMUSG00000029416.17) protein_coding-TTS (ENSMUSG00000029416.17) 9878 ENSMUSG00000029416.17 ENSMUSG00000029416 ENSMUST00000182841 Slc15a4 protein_coding Interval_30905 chr11 97164425 97164691 + 0 NA promoter-TSS (ENSMUSG00000001440.5) protein_coding-promoter-TSS (ENSMUSG00000001440.5) 842 ENSMUSG00000001440.5 ENSMUSG00000001440 ENSMUST00000153727 Kpnb1 protein_coding Interval_98380 chr2 151973240 151974001 + 0 NA promoter-TSS (ENSMUSG00000027459.16) protein_coding-promoter-TSS (ENSMUSG00000027459.16) 315 ENSMUSG00000027459.16 ENSMUSG00000027459 ENSMUST00000109863 Fam110a protein_coding Interval_158807 chr8 86795820 86796053 + 0 NA Intergenic Intergenic -50002 ENSMUSG00000036840.5 ENSMUSG00000036840 ENSMUST00000045296 Siah1a protein_coding Interval_111757 chr4 27584339 27584566 + 0 NA Intergenic Intergenic 41274 ENSMUSG00000084163.1 ENSMUSG00000084163 ENSMUST00000120412 Gm11901 processed_pseudogene Interval_101543 chr3 4769117 4769337 + 0 NA Intergenic Intergenic 3129 ENSMUSG00000103306.1 ENSMUSG00000103306 ENSMUST00000194754 Gm37801 processed_pseudogene Interval_136330 chr6 53144173 53144420 + 0 NA Intergenic Intergenic 27439 ENSMUSG00000108028.1 ENSMUSG00000108028 ENSMUST00000203654 Gm8143 processed_pseudogene Interval_23813 chr11 26513346 26514161 + 0 NA intron (ENSMUSG00000064090.14, intron 6 of 11) protein_coding-intron (ENSMUSG00000064090.14, intron 7 of 12) -79473 ENSMUSG00000068314.5 ENSMUSG00000068314 ENSMUST00000089614 Gm6899 TEC Interval_53304 chr14 55905302 55905938 + 0 NA Intergenic Intergenic -5640 ENSMUSG00000022223.9 ENSMUSG00000022223 ENSMUST00000227677 Sdr39u1 protein_coding Interval_81698 chr18 63659538 63659734 + 0 NA Intergenic Intergenic 49158 ENSMUSG00000024583.3 ENSMUSG00000024583 ENSMUST00000236253 Txnl1 protein_coding Interval_714 chr1 10102154 10102401 + 0 NA intron (ENSMUSG00000056763.16, intron 16 of 28) protein_coding-intron (ENSMUSG00000056763.16, intron 16 of 29) 39424 ENSMUSG00000067851.11 ENSMUSG00000067851 ENSMUST00000186720 Arfgef1 protein_coding Interval_82442 chr18 74037122 74038236 + 0 NA intron (ENSMUSG00000024558.12, intron 1 of 1) protein_coding-intron (ENSMUSG00000024558.12, intron 1 of 5) 19772 ENSMUSG00000090263.1 ENSMUSG00000090263 ENSMUST00000159260 D730045A05Rik lincRNA Interval_49383 chr13 111588116 111588813 + 0 NA intron (ENSMUSG00000086649.1, intron 2 of 3) processed_transcript-intron (ENSMUSG00000086649.1, intron 2 of 3) -4321 ENSMUSG00000067122.2 ENSMUSG00000067122 ENSMUST00000086960 Gm10198 protein_coding Interval_89123 chr2 16894128 16895030 + 0 NA Intergenic Intergenic 65439 ENSMUSG00000076950.1 ENSMUSG00000076950 ENSMUST00000103762 Gm24933 miRNA Interval_53504 chr14 57908451 57908990 + 0 NA Intergenic Intergenic 11212 ENSMUSG00000021973.9 ENSMUSG00000021973 ENSMUST00000225116 Micu2 protein_coding Interval_126152 chr5 79803235 79803450 + 0 NA Intergenic Intergenic -52813 ENSMUSG00000084435.1 ENSMUSG00000084435 ENSMUST00000122486 Gm23429 snRNA Interval_160719 chr8 111799307 111799519 + 0 NA intron (ENSMUSG00000031954.6, intron 5 of 6) protein_coding-intron (ENSMUSG00000031954.6, intron 5 of 6) 54878 ENSMUSG00000031954.6 ENSMUSG00000031954 ENSMUST00000034432 Cfdp1 protein_coding Interval_149530 chr7 99365011 99365343 + 0 NA Intergenic Intergenic -12074 ENSMUSG00000070436.12 ENSMUSG00000070436 ENSMUST00000208292 Serpinh1 protein_coding Interval_116821 chr4 117445759 117446531 + 0 NA exon (ENSMUSG00000086876.1, exon 2 of 3) antisense-exon (ENSMUSG00000086876.1, exon 2 of 3) 195 ENSMUSG00000086876.1 ENSMUSG00000086876 ENSMUST00000136115 Gm12828 antisense Interval_2729 chr1 43964372 43965334 + 0 NA intron (ENSMUSG00000041763.14, intron 10 of 23) protein_coding-intron (ENSMUSG00000041763.14, intron 10 of 29) 30839 ENSMUSG00000041763.14 ENSMUSG00000041763 ENSMUST00000187115 Tpp2 protein_coding Interval_134809 chr6 31704081 31704858 + 0 NA intron (ENSMUSG00000086804.8, intron 1 of 1) lincRNA-intron (ENSMUSG00000086804.8, intron 2 of 2) 2521 ENSMUSG00000107010.1 ENSMUSG00000107010 ENSMUST00000202780 Gm43293 lincRNA Interval_124918 chr5 60609092 60609361 + 0 NA Intergenic Intergenic 30596 ENSMUSG00000106548.1 ENSMUSG00000106548 ENSMUST00000196614 Gm43390 processed_pseudogene Interval_40598 chr12 105941750 105942869 + 0 NA Intergenic Intergenic 42468 ENSMUSG00000113835.1 ENSMUSG00000113835 ENSMUST00000220934 Gm19554 lincRNA Interval_3153 chr1 54075468 54075700 + 0 NA intron (ENSMUSG00000042807.15, intron 1 of 3) protein_coding-intron (ENSMUSG00000042807.15, intron 1 of 28) 79512 ENSMUSG00000102868.1 ENSMUSG00000102868 ENSMUST00000192858 Gm37633 TEC Interval_56313 chr14 117150137 117150489 + 0 NA intron (ENSMUSG00000058571.11, intron 1 of 9) protein_coding-intron (ENSMUSG00000058571.11, intron 1 of 8) 224782 ENSMUSG00000058571.11 ENSMUSG00000058571 ENSMUST00000078849 Gpc6 protein_coding Interval_59913 chr15 61826083 61826269 + 0 NA promoter-TSS (ENSMUSG00000116017.1) processed_pseudogene-promoter-TSS (ENSMUSG00000116017.1) -71 ENSMUSG00000116017.1 ENSMUSG00000116017 ENSMUST00000229370 Gm18154 processed_pseudogene Interval_90989 chr2 33966241 33967258 + 0 NA Intergenic Intergenic -11497 ENSMUSG00000086904.1 ENSMUSG00000086904 ENSMUST00000156633 Gm13404 lincRNA Interval_44025 chr13 39929094 39929780 + 0 NA Intergenic Intergenic -45056 ENSMUSG00000114957.1 ENSMUSG00000114957 ENSMUST00000224937 Gm47316 lincRNA Interval_164482 chr9 37407836 37408574 + 0 NA exon (ENSMUSG00000032125.21, exon 12 of 18) protein_coding-exon (ENSMUSG00000032125.21, exon 12 of 18) 6159 ENSMUSG00000032125.21 ENSMUSG00000032125 ENSMUST00000215777 Robo4 protein_coding Interval_69414 chr16 93035701 93035970 + 0 NA Intergenic Intergenic -36920 ENSMUSG00000098983.1 ENSMUSG00000098983 ENSMUST00000184529 Gm28003 miRNA Interval_173699 chrX 102156671 102157750 + 0 NA promoter-TSS (ENSMUSG00000051220.2) protein_coding-promoter-TSS (ENSMUSG00000051220.2) -119 ENSMUSG00000051220.2 ENSMUSG00000051220 ENSMUST00000056904 Ercc6l protein_coding Interval_120555 chr4 149340202 149341127 + 0 NA intron (ENSMUSG00000028960.20, intron 25 of 29) protein_coding-intron (ENSMUSG00000028960.20, intron 22 of 26) 2577 ENSMUSG00000085807.1 ENSMUSG00000085807 ENSMUST00000154000 Ube4bos2 antisense Interval_56800 chr14 122164439 122164755 + 0 NA Intergenic Intergenic 43044 ENSMUSG00000090674.1 ENSMUSG00000090674 ENSMUST00000166043 Gm17082 processed_pseudogene Interval_122235 chr5 20536490 20537113 + 0 NA intron (ENSMUSG00000040003.18, intron 12 of 20) protein_coding-intron (ENSMUSG00000040003.18, intron 12 of 22) -51795 ENSMUSG00000106240.1 ENSMUSG00000106240 ENSMUST00000196129 Gm3544 processed_pseudogene Interval_109462 chr3 142687706 142688954 + 0 NA Intergenic Intergenic -12756 ENSMUSG00000040213.13 ENSMUSG00000040213 ENSMUST00000128096 Kyat3 protein_coding Interval_90665 chr2 31767400 31767653 + 0 NA intron (ENSMUSG00000026842.16, intron 1 of 2) protein_coding-intron (ENSMUSG00000026842.16, intron 1 of 10) 43054 ENSMUSG00000043102.2 ENSMUSG00000043102 ENSMUST00000057407 Qrfp protein_coding Interval_32918 chr11 113105546 113105776 + 0 NA intron (ENSMUSG00000087259.7, intron 1 of 3) lincRNA-intron (ENSMUSG00000087259.7, intron 1 of 2) 67416 ENSMUSG00000087259.7 ENSMUSG00000087259 ENSMUST00000150712 2610035D17Rik lincRNA Interval_7532 chr1 132046305 132046780 + 0 NA promoter-TSS (ENSMUSG00000059149.17) protein_coding-promoter-TSS (ENSMUSG00000059149.17) -4626 ENSMUSG00000059149.17 ENSMUSG00000059149 ENSMUST00000162628 Mfsd4a protein_coding Interval_87683 chr19 54422638 54422847 + 0 NA Intergenic Intergenic -22238 ENSMUSG00000117755.1 ENSMUSG00000117755 ENSMUST00000236789 Gm50188 processed_pseudogene Interval_77544 chr17 91273819 91274856 + 0 NA Intergenic Intergenic 37526 ENSMUSG00000043346.9 ENSMUSG00000043346 ENSMUST00000057074 Gm6741 processed_pseudogene Interval_58513 chr15 35352658 35353794 + 0 NA Intergenic Intergenic 19921 ENSMUSG00000115829.1 ENSMUSG00000115829 ENSMUST00000228236 Gm48960 antisense Interval_26737 chr11 60100864 60101288 + 0 NA Intergenic Intergenic 1529 ENSMUSG00000098502.1 ENSMUSG00000098502 ENSMUST00000183502 Gm27511 misc_RNA Interval_32529 chr11 108178821 108179057 + 0 NA intron (ENSMUSG00000050965.14, intron 3 of 16) protein_coding-intron (ENSMUSG00000050965.14, intron 3 of 16) -2911 ENSMUSG00000084978.1 ENSMUSG00000084978 ENSMUST00000153899 Gm11655 antisense Interval_80743 chr18 46747836 46748951 + 0 NA intron (ENSMUSG00000024480.9, intron 1 of 7) protein_coding-intron (ENSMUSG00000024480.9, intron 1 of 5) -6836 ENSMUSG00000032905.5 ENSMUSG00000032905 ENSMUST00000234830 Atg12 protein_coding Interval_129393 chr5 119706560 119706960 + 0 NA Intergenic Intergenic -15542 ENSMUSG00000086847.1 ENSMUSG00000086847 ENSMUST00000135385 Tbx3os2 lincRNA Interval_64771 chr16 15609081 15609463 + 0 NA exon (ENSMUSG00000116140.1, exon 1 of 1) processed_pseudogene-exon (ENSMUSG00000116140.1, exon 1 of 1) 165 ENSMUSG00000116140.1 ENSMUSG00000116140 ENSMUST00000230520 Gm7748 processed_pseudogene Interval_19092 chr10 94453586 94453853 + 0 NA intron (ENSMUSG00000020023.18, intron 2 of 2) protein_coding-intron (ENSMUSG00000020023.18, intron 2 of 2) 44828 ENSMUSG00000085409.1 ENSMUSG00000085409 ENSMUST00000155180 Gm16155 sense_intronic Interval_111526 chr4 22477036 22480347 + 0 NA Intergenic Intergenic 9675 ENSMUSG00000095139.2 ENSMUSG00000095139 ENSMUST00000178174 Pou3f2 protein_coding Interval_88572 chr2 6265144 6266084 + 0 NA intron (ENSMUSG00000087125.1, intron 3 of 6) antisense-intron (ENSMUSG00000087125.1, intron 3 of 6) -8348 ENSMUSG00000087485.1 ENSMUSG00000087485 ENSMUST00000131190 Gm13383 lincRNA Interval_35851 chr12 31236964 31237608 + 0 NA Intergenic Intergenic 2714 ENSMUSG00000112518.1 ENSMUSG00000112518 ENSMUST00000218421 Gm48117 processed_pseudogene Interval_103915 chr3 54932747 54933256 + 0 NA Intergenic Intergenic -17970 ENSMUSG00000056306.5 ENSMUSG00000056306 ENSMUST00000070342 Sertm1 protein_coding Interval_81438 chr18 60753577 60753788 + 0 NA intron (ENSMUSG00000024608.11, intron 1 of 5) protein_coding-intron (ENSMUSG00000024608.11, intron 1 of 5) 6584 ENSMUSG00000024608.11 ENSMUSG00000024608 ENSMUST00000122279 Rps14 protein_coding Interval_166655 chr9 61636473 61636745 + 0 NA Intergenic Intergenic -126475 ENSMUSG00000111739.1 ENSMUSG00000111739 ENSMUST00000213572 Gm47241 processed_pseudogene Interval_65975 chr16 30645788 30647074 + 0 NA Intergenic Intergenic 46708 ENSMUSG00000046546.3 ENSMUSG00000046546 ENSMUST00000059078 Fam43a protein_coding Interval_55325 chr14 82957599 82958099 + 0 NA Intergenic Intergenic 65012 ENSMUSG00000115031.1 ENSMUSG00000115031 ENSMUST00000228219 Gm49051 processed_pseudogene Interval_29942 chr11 87934017 87934301 + 0 NA Intergenic Intergenic 2172 ENSMUSG00000083135.1 ENSMUSG00000083135 ENSMUST00000120211 Gm11504 processed_pseudogene Interval_158278 chr8 80778898 80779908 + 0 NA intron (ENSMUSG00000031714.9, intron 6 of 10) protein_coding-intron (ENSMUSG00000031714.9, intron 6 of 9) 8712 ENSMUSG00000109584.1 ENSMUSG00000109584 ENSMUST00000210546 Gm7997 processed_pseudogene Interval_131359 chr5 136702412 136702915 + 0 NA Intergenic Intergenic 4884 ENSMUSG00000005474.9 ENSMUSG00000005474 ENSMUST00000197849 Myl10 protein_coding Interval_106588 chr3 97546055 97546865 + 0 NA Intergenic Intergenic -63472 ENSMUSG00000105004.1 ENSMUSG00000105004 ENSMUST00000198613 Gm43075 TEC Interval_94877 chr2 99166736 99167388 + 0 NA Intergenic Intergenic 190667 ENSMUSG00000101186.1 ENSMUSG00000101186 ENSMUST00000185786 Gm29235 lincRNA Interval_84174 chr19 8440775 8441090 + 0 NA Intergenic Intergenic -35827 ENSMUSG00000052562.15 ENSMUSG00000052562 ENSMUST00000120540 Slc22a30 protein_coding Interval_97769 chr2 143943344 143943542 + 0 NA TTS (ENSMUSG00000015932.8) protein_coding-TTS (ENSMUSG00000015932.8) 14202 ENSMUSG00000027422.15 ENSMUSG00000027422 ENSMUST00000037875 Rrbp1 protein_coding Interval_171367 chr9 117109740 117110095 + 0 NA intron (ENSMUSG00000039607.17, intron 4 of 15) protein_coding-intron (ENSMUSG00000039607.17, intron 2 of 12) 44390 ENSMUSG00000092516.1 ENSMUSG00000092516 ENSMUST00000174520 Gm20397 processed_pseudogene Interval_65881 chr16 30034317 30034577 + 0 NA intron (ENSMUSG00000116660.1, intron 2 of 3) lincRNA-intron (ENSMUSG00000116660.1, intron 2 of 3) 5032 ENSMUSG00000116660.1 ENSMUSG00000116660 ENSMUST00000232465 9030404E10Rik lincRNA Interval_105527 chr3 87322457 87323252 + 0 NA Intergenic Intergenic -35027 ENSMUSG00000015854.7 ENSMUSG00000015854 ENSMUST00000015998 Cd5l protein_coding Interval_141682 chr6 133313085 133314446 + 0 NA Intergenic Intergenic 3836 ENSMUSG00000107625.1 ENSMUSG00000107625 ENSMUST00000203547 Gm34149 unprocessed_pseudogene Interval_28873 chr11 78952390 78953330 + 0 NA exon (ENSMUSG00000020826.9, exon 22 of 27) protein_coding-exon (ENSMUSG00000020826.9, exon 22 of 27) 17470 ENSMUSG00000001123.15 ENSMUSG00000001123 ENSMUST00000140073 Lgals9 protein_coding Interval_20641 chr10 119885502 119885764 + 0 NA intron (ENSMUSG00000034813.18, intron 1 of 21) protein_coding-intron (ENSMUSG00000034813.18, intron 1 of 22) -33356 ENSMUSG00000085418.1 ENSMUSG00000085418 ENSMUST00000135940 Grip1os1 antisense Interval_136024 chr6 49899091 49900227 + 0 NA Intergenic Intergenic -40813 ENSMUSG00000107664.1 ENSMUSG00000107664 ENSMUST00000205019 Gm18007 processed_pseudogene Interval_92174 chr2 55293072 55293383 + 0 NA TTS (ENSMUSG00000082301.1) processed_pseudogene-TTS (ENSMUSG00000082301.1) 1162 ENSMUSG00000082301.1 ENSMUSG00000082301 ENSMUST00000117686 Gm14032 processed_pseudogene Interval_129047 chr5 117087536 117088313 + 0 NA Intergenic Intergenic 16477 ENSMUSG00000066900.11 ENSMUSG00000066900 ENSMUST00000201287 Suds3 protein_coding Interval_74151 chr17 46816196 46816543 + 0 NA intron (ENSMUSG00000036568.7, intron 5 of 11) protein_coding-intron (ENSMUSG00000036568.7, intron 4 of 10) 15945 ENSMUSG00000036568.7 ENSMUSG00000036568 ENSMUST00000233455 Bicral protein_coding Interval_129925 chr5 123090190 123091218 + 0 NA intron (ENSMUSG00000054434.14, intron 1 of 2) protein_coding-intron (ENSMUSG00000054434.14, intron 1 of 11) 14334 ENSMUSG00000054434.14 ENSMUSG00000054434 ENSMUST00000161049 Tmem120b protein_coding Interval_42992 chr13 22582576 22584000 + 0 NA Intergenic Intergenic 9712 ENSMUSG00000100296.2 ENSMUSG00000100296 ENSMUST00000185475 Vmn1r205 protein_coding Interval_96414 chr2 122301265 122303166 + 0 NA TTS (ENSMUSG00000027224.14) protein_coding-TTS (ENSMUSG00000027224.14) 3315 ENSMUSG00000027225.7 ENSMUSG00000027225 ENSMUST00000028656 Duoxa2 protein_coding Interval_9255 chr1 155538337 155538574 + 0 NA Intergenic Intergenic -11312 ENSMUSG00000073535.5 ENSMUSG00000073535 ENSMUST00000194133 Gm5532 lincRNA Interval_91742 chr2 48982822 48983041 + 0 NA intron (ENSMUSG00000036792.12, intron 2 of 14) protein_coding-intron (ENSMUSG00000036792.12, intron 1 of 10) -72918 ENSMUSG00000026761.12 ENSMUSG00000026761 ENSMUST00000123271 Orc4 protein_coding Interval_96510 chr2 125189004 125189632 + 0 NA intron (ENSMUSG00000027202.12, intron 14 of 26) protein_coding-intron (ENSMUSG00000027202.12, intron 14 of 26) 28194 ENSMUSG00000086416.1 ENSMUSG00000086416 ENSMUST00000123574 Gm14002 antisense Interval_160263 chr8 107544385 107545129 + 0 NA promoter-TSS (ENSMUSG00000031930.11) protein_coding-promoter-TSS (ENSMUSG00000031930.11) -6487 ENSMUSG00000065439.1 ENSMUSG00000065439 ENSMUST00000083505 Mir140 miRNA Interval_97567 chr2 139937153 139937920 + 0 NA intron (ENSMUSG00000039033.11, intron 10 of 13) protein_coding-intron (ENSMUSG00000039033.11, intron 10 of 13) 74239 ENSMUSG00000084207.1 ENSMUSG00000084207 ENSMUST00000120773 Gm14070 processed_pseudogene Interval_152389 chr7 132692475 132692734 + 0 NA intron (ENSMUSG00000030946.13, intron 7 of 7) protein_coding-intron (ENSMUSG00000030946.13, intron 6 of 6) -32720 ENSMUSG00000087348.1 ENSMUSG00000087348 ENSMUST00000132849 Gm15582 antisense Interval_168368 chr9 79738147 79738403 + 0 NA Intergenic Intergenic -19555 ENSMUSG00000032332.17 ENSMUSG00000032332 ENSMUST00000141667 Col12a1 protein_coding Interval_96452 chr2 123308469 123308724 + 0 NA Intergenic Intergenic 34672 ENSMUSG00000084372.1 ENSMUSG00000084372 ENSMUST00000119363 Gm13988 processed_pseudogene Interval_172155 chrX 8053428 8053755 + 0 NA intron (ENSMUSG00000087193.7, intron 1 of 3) antisense-intron (ENSMUSG00000087193.7, intron 1 of 3) 2000 ENSMUSG00000087193.7 ENSMUSG00000087193 ENSMUST00000188632 Gm14820 antisense Interval_172983 chrX 60026661 60026870 + 0 NA intron (ENSMUSG00000031138.4, intron 6 of 7) protein_coding-intron (ENSMUSG00000031138.4, intron 6 of 7) 19464 ENSMUSG00000046993.6 ENSMUSG00000046993 ENSMUST00000153890 Gm5637 processed_pseudogene Interval_126038 chr5 77015486 77016728 + 0 NA promoter-TSS (ENSMUSG00000029248.14) protein_coding-promoter-TSS (ENSMUSG00000029248.14) 2756 ENSMUSG00000086632.1 ENSMUSG00000086632 ENSMUST00000129353 1700112J05Rik lincRNA Interval_48935 chr13 105134575 105134949 + 0 NA intron (ENSMUSG00000021720.11, intron 7 of 7) protein_coding-intron (ENSMUSG00000021720.11, intron 7 of 7) 52640 ENSMUSG00000021718.5 ENSMUSG00000021718 ENSMUST00000022232 Nt5el protein_coding Interval_90095 chr2 27959650 27959854 + 0 NA intron (ENSMUSG00000026837.16, intron 11 of 65) protein_coding-intron (ENSMUSG00000026837.16, intron 11 of 65) -62534 ENSMUSG00000026837.16 ENSMUSG00000026837 ENSMUST00000238851 Col5a1 protein_coding Interval_40910 chr12 109812882 109814146 + 0 NA Intergenic Intergenic -13489 ENSMUSG00000113711.1 ENSMUSG00000113711 ENSMUST00000221611 Gm9661 processed_pseudogene Interval_140468 chr6 118465287 118466230 + 0 NA intron (ENSMUSG00000072623.6, intron 5 of 5) protein_coding-intron (ENSMUSG00000072623.6, intron 5 of 5) 2661 ENSMUSG00000072623.6 ENSMUSG00000072623 ENSMUST00000204066 Zfp9 protein_coding Interval_12255 chr1 191153056 191153838 + 0 NA Intergenic Intergenic 11370 ENSMUSG00000091017.1 ENSMUSG00000091017 ENSMUST00000171798 Fam71a protein_coding Interval_111574 chr4 23652236 23652579 + 0 NA Intergenic Intergenic 7937 ENSMUSG00000084179.1 ENSMUSG00000084179 ENSMUST00000119585 Gm11890 processed_pseudogene Interval_94886 chr2 100399795 100400250 + 0 NA Intergenic Intergenic 8257 ENSMUSG00000082435.1 ENSMUSG00000082435 ENSMUST00000120998 Gm13813 processed_pseudogene Interval_14770 chr10 39716042 39717557 + 0 NA intron (ENSMUSG00000087177.7, intron 1 of 1) antisense-intron (ENSMUSG00000087177.7, intron 1 of 3) 15207 ENSMUSG00000087177.7 ENSMUSG00000087177 ENSMUST00000153113 E130307A14Rik antisense Interval_3144 chr1 53981729 53982012 + 0 NA intron (ENSMUSG00000042807.15, intron 2 of 3) protein_coding-intron (ENSMUSG00000042807.15, intron 2 of 28) -94929 ENSMUSG00000087949.1 ENSMUSG00000087949 ENSMUST00000157324 Gm24251 snRNA Interval_63494 chr15 101447895 101448079 + 0 NA intron (ENSMUSG00000063971.7, intron 1 of 4) protein_coding-intron (ENSMUSG00000063971.7, intron 1 of 4) 243 ENSMUSG00000063971.7 ENSMUSG00000063971 ENSMUST00000023781 Krt88 protein_coding Interval_32129 chr11 105401904 105402591 + 0 NA intron (ENSMUSG00000078627.9, intron 1 of 3) protein_coding-intron (ENSMUSG00000078627.9, intron 5 of 11) 6460 ENSMUSG00000078627.9 ENSMUSG00000078627 ENSMUST00000100332 Marchf10 protein_coding Interval_34106 chr11 120672522 120674142 + 0 NA promoter-TSS (ENSMUSG00000025142.18) protein_coding-promoter-TSS (ENSMUSG00000025142.18) -12157 ENSMUSG00000042988.10 ENSMUSG00000042988 ENSMUST00000150458 Notum protein_coding Interval_16673 chr10 66956964 66957334 + 0 NA Intergenic Intergenic 36847 ENSMUSG00000097921.2 ENSMUSG00000097921 ENSMUST00000181018 Gm26576 lincRNA Interval_132799 chr5 147951100 147952249 + 0 NA intron (ENSMUSG00000085565.1, intron 3 of 3) lincRNA-intron (ENSMUSG00000085565.1, intron 3 of 3) 5492 ENSMUSG00000085565.1 ENSMUSG00000085565 ENSMUST00000138406 Gm15721 lincRNA Interval_10801 chr1 175186478 175186668 + 0 NA intron (ENSMUSG00000026527.13, intron 4 of 17) protein_coding-intron (ENSMUSG00000026527.13, intron 3 of 15) -100393 ENSMUSG00000026527.13 ENSMUSG00000026527 ENSMUST00000193798 Rgs7 protein_coding Interval_91443 chr2 38914345 38914653 + 0 NA intron (ENSMUSG00000063972.13, intron 1 of 5) protein_coding-intron (ENSMUSG00000063972.13, intron 1 of 10) -17479 ENSMUSG00000046618.7 ENSMUSG00000046618 ENSMUST00000057279 Olfml2a protein_coding Interval_53272 chr14 55721458 55722417 + 0 NA exon (ENSMUSG00000040472.15, exon 1 of 16) protein_coding-exon (ENSMUSG00000040472.15, exon 1 of 16) 244 ENSMUSG00000040472.15 ENSMUSG00000040472 ENSMUST00000227132 Rabggta protein_coding Interval_129694 chr5 121812824 121814368 + 0 NA TTS (ENSMUSG00000042605.16) protein_coding-TTS (ENSMUSG00000042605.16) 5677 ENSMUSG00000099063.1 ENSMUSG00000099063 ENSMUST00000183860 Mir7031 miRNA Interval_102604 chr3 28246165 28246580 + 0 NA TTS (ENSMUSG00000103729.1) processed_pseudogene-TTS (ENSMUSG00000103729.1) 849 ENSMUSG00000103729.1 ENSMUSG00000103729 ENSMUST00000192290 Gm37098 processed_pseudogene Interval_115135 chr4 91333952 91335303 + 0 NA intron (ENSMUSG00000008489.18, intron 1 of 7) protein_coding-intron (ENSMUSG00000008489.18, intron 1 of 6) 22055 ENSMUSG00000008489.18 ENSMUSG00000008489 ENSMUST00000176151 Elavl2 protein_coding Interval_142157 chr6 137696945 137697635 + 0 NA Intergenic Intergenic -47750 ENSMUSG00000030224.10 ENSMUSG00000030224 ENSMUST00000137235 Strap protein_coding Interval_10373 chr1 170101999 170103495 + 0 NA intron (ENSMUSG00000026674.9, intron 1 of 3) protein_coding-intron (ENSMUSG00000026674.9, intron 1 of 17) 8015 ENSMUSG00000026674.9 ENSMUSG00000026674 ENSMUST00000194619 Ddr2 protein_coding Interval_13825 chr10 23150565 23151067 + 0 NA intron (ENSMUSG00000010461.15, intron 11 of 19) protein_coding-intron (ENSMUSG00000010461.15, intron 10 of 18) 16155 ENSMUSG00000094033.1 ENSMUSG00000094033 ENSMUST00000178790 Gm24655 snRNA Interval_26406 chr11 57677164 57677458 + 0 NA intron (ENSMUSG00000020520.14, intron 1 of 2) protein_coding-intron (ENSMUSG00000020520.14, intron 1 of 11) -19485 ENSMUSG00000086933.1 ENSMUSG00000086933 ENSMUST00000143009 4933426K07Rik antisense Interval_50691 chr14 18282053 18282333 + 0 NA TTS (ENSMUSG00000021774.13) protein_coding-TTS (ENSMUSG00000021774.13) 10929 ENSMUSG00000021772.15 ENSMUSG00000021772 ENSMUST00000156186 Nkiras1 protein_coding Interval_54800 chr14 75209859 75210570 + 0 NA intron (ENSMUSG00000021998.16, intron 9 of 16) protein_coding-intron (ENSMUSG00000021998.16, intron 8 of 15) -10943 ENSMUSG00000090054.1 ENSMUSG00000090054 ENSMUST00000161819 Gm15629 antisense Interval_169374 chr9 96772594 96774053 + 0 NA TTS (ENSMUSG00000101581.6) processed_transcript-TTS (ENSMUSG00000101581.6) 7738 ENSMUSG00000101581.6 ENSMUSG00000101581 ENSMUST00000190054 C430002N11Rik processed_transcript Interval_105629 chr3 88237413 88238122 + 0 NA Intergenic Intergenic 16942 ENSMUSG00000104445.1 ENSMUSG00000104445 ENSMUST00000171887 Rhbg protein_coding Interval_147287 chr7 65497896 65498692 + 0 NA intron (ENSMUSG00000030516.14, intron 2 of 4) protein_coding-intron (ENSMUSG00000030516.14, intron 2 of 4) -17073 ENSMUSG00000108533.1 ENSMUSG00000108533 ENSMUST00000207008 Gm44792 TEC Interval_14397 chr10 32924325 32924922 + 0 NA intron (ENSMUSG00000112469.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000112469.1, intron 1 of 1) 15062 ENSMUSG00000112469.1 ENSMUSG00000112469 ENSMUST00000218959 Gm47823 lincRNA Interval_95529 chr2 111599499 111599824 + 0 NA Intergenic Intergenic -5650 ENSMUSG00000096690.1 ENSMUSG00000096690 ENSMUST00000117697 Olfr1296-ps1 unprocessed_pseudogene Interval_13929 chr10 24760798 24761203 + 0 NA Intergenic Intergenic -49003 ENSMUSG00000037370.13 ENSMUSG00000037370 ENSMUST00000142974 Enpp1 protein_coding Interval_76336 chr17 79188223 79189348 + 0 NA Intergenic Intergenic 69264 ENSMUSG00000117047.1 ENSMUSG00000117047 ENSMUST00000232946 Gm5230 processed_pseudogene Interval_62277 chr15 89402355 89402896 + 0 NA intron (ENSMUSG00000078938.9, intron 1 of 2) protein_coding-intron (ENSMUSG00000078938.9, intron 1 of 2) 7878 ENSMUSG00000078938.9 ENSMUSG00000078938 ENSMUST00000167959 Syce3 protein_coding Interval_22572 chr11 11867044 11868532 + 0 NA promoter-TSS (ENSMUSG00000086391.1) antisense-promoter-TSS (ENSMUSG00000086391.1) -335 ENSMUSG00000086391.1 ENSMUSG00000086391 ENSMUST00000151032 1700042O10Rik antisense Interval_161820 chr8 123001443 123002083 + 0 NA intron (ENSMUSG00000035569.17, intron 1 of 2) protein_coding-intron (ENSMUSG00000035569.17, intron 1 of 12) -18820 ENSMUSG00000065915.1 ENSMUSG00000065915 ENSMUST00000083981 Gm24445 snRNA Interval_16808 chr10 68268853 68269503 + 0 NA intron (ENSMUSG00000019947.10, intron 2 of 9) protein_coding-intron (ENSMUSG00000019947.10, intron 2 of 10) 9562 ENSMUSG00000019947.10 ENSMUSG00000019947 ENSMUST00000218425 Arid5b protein_coding Interval_20383 chr10 117215647 117215994 + 0 NA exon (ENSMUSG00000020171.8, exon 7 of 7) protein_coding-exon (ENSMUSG00000020171.8, exon 7 of 7) 1538 ENSMUSG00000020171.8 ENSMUSG00000020171 ENSMUST00000219609 Yeats4 protein_coding Interval_75845 chr17 71769692 71770018 + 0 NA exon (ENSMUSG00000024059.10, exon 1 of 16) protein_coding-exon (ENSMUSG00000024059.10, exon 1 of 16) -13093 ENSMUSG00000117075.1 ENSMUSG00000117075 ENSMUST00000233072 Gm49922 TEC Interval_51034 chr14 21686135 21686948 + 0 NA intron (ENSMUSG00000063821.6, intron 2 of 2) protein_coding-intron (ENSMUSG00000063821.6, intron 3 of 3) 16561 ENSMUSG00000063821.6 ENSMUSG00000063821 ENSMUST00000224735 Dupd1 protein_coding Interval_72495 chr17 30188924 30189120 + 0 NA intron (ENSMUSG00000044477.12, intron 2 of 3) protein_coding-intron (ENSMUSG00000044477.12, intron 3 of 4) 11547 ENSMUSG00000117974.1 ENSMUSG00000117974 ENSMUST00000236459 Tuba-rs1 transcribed_processed_pseudogene Interval_163683 chr9 24291097 24292171 + 0 NA intron (ENSMUSG00000043659.11, intron 3 of 5) protein_coding-intron (ENSMUSG00000043659.11, intron 6 of 9) -3793 ENSMUSG00000111002.1 ENSMUSG00000111002 ENSMUST00000214088 Gm47674 TEC Interval_98956 chr2 156311605 156313193 + 0 NA promoter-TSS (ENSMUSG00000038085.13) protein_coding-promoter-TSS (ENSMUSG00000038085.13) 348 ENSMUSG00000046229.10 ENSMUSG00000046229 ENSMUST00000079125 Scand1 protein_coding Interval_39120 chr12 85218882 85220098 + 0 NA promoter-TSS (ENSMUSG00000004788.11) protein_coding-promoter-TSS (ENSMUSG00000004788.11) -56 ENSMUSG00000004788.11 ENSMUSG00000004788 ENSMUST00000130760 Eif2b2 protein_coding Interval_121795 chr5 8333496 8334484 + 0 NA intron (ENSMUSG00000040537.17, intron 2 of 4) protein_coding-intron (ENSMUSG00000040537.17, intron 2 of 28) -4595 ENSMUSG00000106265.1 ENSMUSG00000106265 ENSMUST00000198595 Gm42490 TEC Interval_63653 chr15 102577161 102577707 + 0 NA intron (ENSMUSG00000099083.7, intron 2 of 2) protein_coding-intron (ENSMUSG00000099083.7, intron 2 of 10) 47633 ENSMUSG00000052414.9 ENSMUSG00000052414 ENSMUST00000184772 Gm28047 protein_coding Interval_49082 chr13 107824005 107824400 + 0 NA intron (ENSMUSG00000032846.10, intron 1 of 12) protein_coding-intron (ENSMUSG00000032846.10, intron 2 of 14) 5078 ENSMUSG00000093334.2 ENSMUSG00000093334 ENSMUST00000175593 Gm22118 miRNA Interval_6096 chr1 96843807 96844216 + 0 NA intron (ENSMUSG00000040693.7, intron 3 of 12) protein_coding-intron (ENSMUSG00000040693.7, intron 3 of 12) 28160 ENSMUSG00000040693.7 ENSMUSG00000040693 ENSMUST00000071985 Slco4c1 protein_coding Interval_159202 chr8 91629294 91629859 + 0 NA intron (ENSMUSG00000090778.1, intron 1 of 1) protein_coding-intron (ENSMUSG00000055932.15, intron 8 of 8) 153 ENSMUSG00000090778.1 ENSMUSG00000090778 ENSMUST00000168442 Gm3235 antisense Interval_138273 chr6 86771172 86772987 + 0 NA intron (ENSMUSG00000029994.17, intron 1 of 12) protein_coding-intron (ENSMUSG00000029994.17, intron 1 of 12) 21485 ENSMUSG00000029994.17 ENSMUSG00000029994 ENSMUST00000129772 Anxa4 protein_coding Interval_125373 chr5 66529724 66531185 + 0 NA intron (ENSMUSG00000029207.16, intron 1 of 3) protein_coding-intron (ENSMUSG00000029207.16, intron 2 of 17) 3707 ENSMUSG00000106720.1 ENSMUSG00000106720 ENSMUST00000202051 Gm43795 TEC Interval_17201 chr10 74934689 74935663 + 0 NA Intergenic Intergenic -32033 ENSMUSG00000040009.6 ENSMUSG00000040009 ENSMUST00000159991 Gnaz protein_coding Interval_73791 chr17 43695489 43695748 + 0 NA intron (ENSMUSG00000023963.10, intron 6 of 10) protein_coding-intron (ENSMUSG00000023963.10, intron 6 of 11) -2745 ENSMUSG00000084474.1 ENSMUSG00000084474 ENSMUST00000122525 Gm25783 snRNA Interval_14190 chr10 28576478 28576796 + 0 NA intron (ENSMUSG00000019889.10, intron 22 of 30) protein_coding-intron (ENSMUSG00000019889.10, intron 23 of 31) -10356 ENSMUSG00000019889.10 ENSMUSG00000019889 ENSMUST00000220404 Ptprk protein_coding Interval_35035 chr12 16800303 16801632 + 0 NA promoter-TSS (ENSMUSG00000036523.16) protein_coding-promoter-TSS (ENSMUSG00000036523.16) -283 ENSMUSG00000036523.16 ENSMUSG00000036523 ENSMUST00000161998 Greb1 protein_coding Interval_45242 chr13 53447641 53447986 + 0 NA intron (ENSMUSG00000107008.3, intron 6 of 7) lincRNA-intron (ENSMUSG00000107008.3, intron 6 of 7) 25261 ENSMUSG00000021469.9 ENSMUSG00000021469 ENSMUST00000188606 Msx2 protein_coding Interval_147881 chr7 74993294 74993555 + 0 NA Intergenic Intergenic -30727 ENSMUSG00000089522.1 ENSMUSG00000089522 ENSMUST00000158897 Gm22326 misc_RNA Interval_59593 chr15 55706075 55707099 + 0 NA intron (ENSMUSG00000060429.12, intron 3 of 6) protein_coding-intron (ENSMUSG00000060429.12, intron 3 of 6) 89000 ENSMUSG00000022369.13 ENSMUSG00000022369 ENSMUST00000166449 Mtbp protein_coding Interval_108536 chr3 128167806 128168004 + 0 NA intron (ENSMUSG00000105816.4, intron 2 of 5) processed_transcript-intron (ENSMUSG00000105816.4, intron 2 of 2) -34545 ENSMUSG00000105816.4 ENSMUSG00000105816 ENSMUST00000198275 D030025E07Rik processed_transcript Interval_142960 chr6 147348029 147348306 + 0 NA Intergenic Intergenic 76330 ENSMUSG00000081023.1 ENSMUSG00000081023 ENSMUST00000118025 Gm15766 processed_pseudogene Interval_97243 chr2 132589776 132590853 + 0 NA Intergenic Intergenic -7881 ENSMUSG00000074783.10 ENSMUSG00000074783 ENSMUST00000138751 AU019990 lincRNA Interval_154058 chr8 12394906 12397720 + 0 NA promoter-TSS (ENSMUSG00000092656.1) miRNA-promoter-TSS (ENSMUSG00000092656.1) -90 ENSMUSG00000092656.1 ENSMUSG00000092656 ENSMUST00000174915 Gm25239 miRNA Interval_123219 chr5 30711339 30713793 + 0 NA intron (ENSMUSG00000029168.14, intron 1 of 12) protein_coding-intron (ENSMUSG00000029168.14, intron 1 of 12) 45568 ENSMUSG00000029177.9 ENSMUSG00000029177 ENSMUST00000134372 Cenpa protein_coding Interval_22016 chr11 5796681 5798184 + 0 NA intron (ENSMUSG00000020476.14, intron 8 of 12) protein_coding-intron (ENSMUSG00000020476.14, intron 8 of 12) 6301 ENSMUSG00000020475.3 ENSMUSG00000020475 ENSMUST00000020768 Pgam2 protein_coding Interval_34992 chr12 16509136 16510207 + 0 NA Intergenic Intergenic 101295 ENSMUSG00000020593.16 ENSMUSG00000020593 ENSMUST00000221146 Lpin1 protein_coding Interval_154084 chr8 12555357 12555985 + 0 NA intron (ENSMUSG00000097421.2, intron 1 of 1) bidirectional_promoter_lncRNA-intron (ENSMUSG00000097421.2, intron 1 of 1) -17358 ENSMUSG00000010435.7 ENSMUSG00000010435 ENSMUST00000209428 Spaca7 protein_coding Interval_53792 chr14 61807985 61809356 + 0 NA Intergenic Intergenic -112706 ENSMUSG00000114706.1 ENSMUSG00000114706 ENSMUST00000224682 Gm47952 processed_pseudogene Interval_60530 chr15 74665366 74666192 + 0 NA Intergenic Intergenic 6791 ENSMUSG00000022602.14 ENSMUSG00000022602 ENSMUST00000110009 Arc protein_coding Interval_125846 chr5 74960451 74961633 + 0 NA intron (ENSMUSG00000072874.4, intron 2 of 4) lincRNA-intron (ENSMUSG00000072874.4, intron 2 of 4) 11852 ENSMUSG00000072874.4 ENSMUSG00000072874 ENSMUST00000101121 Gm6116 lincRNA Interval_161334 chr8 119802300 119803003 + 0 NA Intergenic Intergenic 20066 ENSMUSG00000031827.13 ENSMUSG00000031827 ENSMUST00000212676 Cotl1 protein_coding Interval_145637 chr7 36643721 36645108 + 0 NA Intergenic Intergenic -51024 ENSMUSG00000104330.1 ENSMUSG00000104330 ENSMUST00000192928 Gm38285 TEC Interval_110779 chr4 8292019 8292240 + 0 NA Intergenic Intergenic -53088 ENSMUSG00000041261.9 ENSMUSG00000041261 ENSMUST00000066674 Car8 protein_coding Interval_26648 chr11 59458550 59459796 + 0 NA TTS (ENSMUSG00000036819.14) protein_coding-TTS (ENSMUSG00000036819.14) 9128 ENSMUSG00000036819.14 ENSMUSG00000036819 ENSMUST00000126158 Jmjd4 protein_coding Interval_55036 chr14 77362830 77363049 + 0 NA intron (ENSMUSG00000022012.9, intron 3 of 18) protein_coding-intron (ENSMUSG00000022012.9, intron 3 of 18) -18753 ENSMUSG00000115733.1 ENSMUSG00000115733 ENSMUST00000227726 Gm49001 transcribed_processed_pseudogene Interval_57 GL456212.1 99144 99431 + 0 NA NA NA NA NA Interval_149598 chr7 99953796 99954633 + 0 NA intron (ENSMUSG00000058761.5, intron 2 of 3) protein_coding-intron (ENSMUSG00000058761.5, intron 2 of 5) 9152 ENSMUSG00000108823.1 ENSMUSG00000108823 ENSMUST00000208954 Gm18959 processed_pseudogene Interval_76162 chr17 75789189 75789636 + 0 NA Intergenic Intergenic -44425 ENSMUSG00000117587.1 ENSMUSG00000117587 ENSMUST00000235034 Gm50099 processed_pseudogene Interval_127788 chr5 107847603 107848229 + 0 NA intron (ENSMUSG00000011831.16, intron 1 of 17) protein_coding-intron (ENSMUSG00000011831.16, intron 1 of 17) 3526 ENSMUSG00000083609.1 ENSMUSG00000083609 ENSMUST00000117837 Gm16007 processed_pseudogene Interval_151924 chr7 127564206 127564733 + 0 NA intron (ENSMUSG00000106715.3, intron 2 of 2) protein_coding-intron (ENSMUSG00000106715.3, intron 2 of 2) 2890 ENSMUSG00000106715.3 ENSMUSG00000106715 ENSMUST00000190278 Tmem265 protein_coding Interval_106196 chr3 94502169 94502626 + 0 NA intron (ENSMUSG00000028136.15, intron 9 of 10) protein_coding-intron (ENSMUSG00000028136.15, intron 10 of 11) 23903 ENSMUSG00000028137.9 ENSMUSG00000028137 ENSMUST00000197033 Celf3 protein_coding Interval_21622 chr11 3292120 3293482 + 0 NA promoter-TSS (ENSMUSG00000020453.17) protein_coding-promoter-TSS (ENSMUSG00000020453.17) -5483 ENSMUSG00000020453.17 ENSMUSG00000020453 ENSMUST00000154319 Patz1 protein_coding Interval_15043 chr10 42178001 42180028 + 0 NA Intergenic Intergenic 79352 ENSMUSG00000048756.11 ENSMUSG00000048756 ENSMUST00000105501 Foxo3 protein_coding Interval_53202 chr14 55094126 55095471 + 0 NA promoter-TSS (ENSMUSG00000045691.14) protein_coding-promoter-TSS (ENSMUSG00000045691.14) 14 ENSMUSG00000045691.14 ENSMUSG00000045691 ENSMUST00000050575 Thtpa protein_coding Interval_173795 chrX 104348446 104348669 + 0 NA promoter-TSS (ENSMUSG00000083327.1) processed_pseudogene-promoter-TSS (ENSMUSG00000083327.1) -323 ENSMUSG00000083327.1 ENSMUSG00000083327 ENSMUST00000120233 Vcp-rs processed_pseudogene Interval_33195 chr11 115151807 115152515 + 0 NA intron (ENSMUSG00000020732.13, intron 2 of 8) protein_coding-intron (ENSMUSG00000020732.13, intron 2 of 8) -2042 ENSMUSG00000020732.13 ENSMUSG00000020732 ENSMUST00000156383 Rab37 protein_coding Interval_144259 chr7 24086833 24088236 + 0 NA intron (ENSMUSG00000057101.8, intron 3 of 5) protein_coding-intron (ENSMUSG00000057101.8, intron 2 of 4) 5610 ENSMUSG00000057101.8 ENSMUSG00000057101 ENSMUST00000206482 Zfp180 protein_coding Interval_106861 chr3 101363394 101365244 + 0 NA Intergenic Intergenic -12764 ENSMUSG00000042035.11 ENSMUSG00000042035 ENSMUST00000195164 Igsf3 protein_coding Interval_115906 chr4 106170459 106171105 + 0 NA Intergenic Intergenic -33004 ENSMUSG00000081189.1 ENSMUSG00000081189 ENSMUST00000121815 Hspd1-ps4 processed_pseudogene Interval_167193 chr9 66078410 66078608 + 0 NA Intergenic Intergenic -8794 ENSMUSG00000039452.6 ENSMUSG00000039452 ENSMUST00000214332 Snx22 protein_coding Interval_14999 chr10 41809421 41810780 + 0 NA promoter-TSS (ENSMUSG00000019813.16) protein_coding-promoter-TSS (ENSMUSG00000019813.16) -470 ENSMUSG00000019813.16 ENSMUSG00000019813 ENSMUST00000215496 Cep57l1 protein_coding Interval_113190 chr4 49368173 49368776 + 0 NA Intergenic Intergenic 17952 ENSMUSG00000081770.1 ENSMUSG00000081770 ENSMUST00000119456 Rbpj-ps1 processed_pseudogene Interval_35440 chr12 21771981 21772954 + 0 NA Intergenic Intergenic 4240 ENSMUSG00000091105.1 ENSMUSG00000091105 ENSMUST00000164169 Mrto4-ps2 processed_pseudogene Interval_111334 chr4 19188616 19188819 + 0 NA Intergenic Intergenic -66191 ENSMUSG00000073991.4 ENSMUSG00000073991 ENSMUST00000137780 Cnbd1 protein_coding Interval_161830 chr8 123075943 123076915 + 0 NA intron (ENSMUSG00000000738.18, intron 1 of 6) protein_coding-intron (ENSMUSG00000000738.18, intron 4 of 16) -18092 ENSMUSG00000000738.18 ENSMUSG00000000738 ENSMUST00000212364 Spg7 protein_coding Interval_129103 chr5 117413343 117414812 + 0 NA promoter-TSS (ENSMUSG00000061578.8) protein_coding-promoter-TSS (ENSMUSG00000061578.8) 77 ENSMUSG00000061578.8 ENSMUSG00000061578 ENSMUST00000180430 Ksr2 protein_coding Interval_89493 chr2 21030202 21031072 + 0 NA Intergenic Intergenic 61583 ENSMUSG00000075514.4 ENSMUSG00000075514 ENSMUST00000126967 Gm13375 antisense Interval_42402 chr13 13173590 13174662 + 0 NA Intergenic Intergenic -2949 ENSMUSG00000113908.1 ENSMUSG00000113908 ENSMUST00000221985 Gm10811 TEC Interval_128060 chr5 110580185 110581322 + 0 NA intron (ENSMUSG00000033316.14, intron 2 of 10) protein_coding-intron (ENSMUSG00000033316.14, intron 2 of 10) -22768 ENSMUSG00000033316.14 ENSMUSG00000033316 ENSMUST00000165856 Galnt9 protein_coding Interval_586 chr1 8248878 8249631 + 0 NA Intergenic Intergenic 204237 ENSMUSG00000102647.1 ENSMUSG00000102647 ENSMUST00000192338 Gm38024 TEC Interval_164339 chr9 35474122 35474626 + 0 NA promoter-TSS (ENSMUSG00000065934.1) snRNA-promoter-TSS (ENSMUSG00000065934.1) -511 ENSMUSG00000065934.1 ENSMUSG00000065934 ENSMUST00000084000 Gm25630 snRNA Interval_74988 chr17 59005596 59006137 + 0 NA TTS (ENSMUSG00000024228.12) protein_coding-TTS (ENSMUSG00000024228.12) 7402 ENSMUSG00000024228.12 ENSMUSG00000024228 ENSMUST00000174122 Nudt12 protein_coding Interval_148827 chr7 89126024 89126981 + 0 NA Intergenic Intergenic 18995 ENSMUSG00000039428.11 ENSMUSG00000039428 ENSMUST00000137723 Tmem135 protein_coding Interval_126714 chr5 92228700 92229451 + 0 NA promoter-TSS (ENSMUSG00000029410.11) protein_coding-promoter-TSS (ENSMUSG00000029410.11) -54 ENSMUSG00000029410.11 ENSMUSG00000029410 ENSMUST00000031359 Ppef2 protein_coding Interval_27183 chr11 63908611 63908914 + 0 NA intron (ENSMUSG00000070407.5, intron 1 of 1) protein_coding-intron (ENSMUSG00000070407.5, intron 1 of 1) 13528 ENSMUSG00000070407.5 ENSMUSG00000070407 ENSMUST00000094103 Hs3st3b1 protein_coding Interval_41438 chr12 113923586 113923959 + 0 NA Intergenic Intergenic 8610 ENSMUSG00000094509.1 ENSMUSG00000094509 ENSMUST00000103463 Ighv14-1 IG_V_gene Interval_73427 chr17 37164543 37165075 + 0 NA exon (ENSMUSG00000092408.1, exon 1 of 1) processed_pseudogene-exon (ENSMUSG00000092408.1, exon 1 of 1) 160 ENSMUSG00000092408.1 ENSMUSG00000092408 ENSMUST00000174813 Vhl-ps1 processed_pseudogene Interval_66207 chr16 32326187 32326682 + 0 NA exon (ENSMUSG00000116900.1, exon 1 of 1) processed_pseudogene-exon (ENSMUSG00000116900.1, exon 1 of 1) 261 ENSMUSG00000116900.1 ENSMUSG00000116900 ENSMUST00000232196 Gm8387 processed_pseudogene Interval_90781 chr2 32581441 32581724 + 0 NA intron (ENSMUSG00000046854.16, intron 10 of 10) protein_coding-intron (ENSMUSG00000046854.16, intron 9 of 9) -5898 ENSMUSG00000075405.3 ENSMUSG00000075405 ENSMUST00000100190 9430097D07Rik antisense Interval_38528 chr12 79895872 79896759 + 0 NA Intergenic Intergenic 29179 ENSMUSG00000112765.1 ENSMUSG00000112765 ENSMUST00000219857 9430078K24Rik lincRNA Interval_63602 chr15 102282381 102282974 + 0 NA TTS (ENSMUSG00000045665.5) protein_coding-TTS (ENSMUSG00000045665.5) 3223 ENSMUSG00000045665.5 ENSMUSG00000045665 ENSMUST00000051341 Mfsd5 protein_coding Interval_22077 chr11 6187546 6188608 + 0 NA intron (ENSMUSG00000053838.14, intron 1 of 2) protein_coding-intron (ENSMUSG00000053838.14, intron 2 of 5) -5043 ENSMUSG00000083209.1 ENSMUSG00000083209 ENSMUST00000118848 Gm11969 processed_pseudogene Interval_173153 chrX 73637406 73637657 + 0 NA Intergenic Intergenic -1888 ENSMUSG00000031383.8 ENSMUSG00000031383 ENSMUST00000019701 Dusp9 protein_coding Interval_156055 chr8 43259837 43260023 + 0 NA Intergenic Intergenic 47006 ENSMUSG00000051176.6 ENSMUSG00000051176 ENSMUST00000082120 Zfp42 protein_coding Interval_63228 chr15 99831699 99832449 + 0 NA intron (ENSMUSG00000023022.14, intron 2 of 3) protein_coding-intron (ENSMUSG00000023022.14, intron 2 of 10) 13054 ENSMUSG00000090500.1 ENSMUSG00000090500 ENSMUST00000169887 Gm17057 antisense Interval_31269 chr11 99243793 99244974 + 0 NA promoter-TSS (ENSMUSG00000035849.14) protein_coding-promoter-TSS (ENSMUSG00000035849.14) -5508 ENSMUSG00000035849.14 ENSMUSG00000035849 ENSMUST00000154622 Krt222 protein_coding Interval_167225 chr9 66294933 66295123 + 0 NA Intergenic Intergenic -55422 ENSMUSG00000038664.16 ENSMUSG00000038664 ENSMUST00000130854 Herc1 protein_coding Interval_24979 chr11 42366076 42366242 + 0 NA Intergenic Intergenic -45108 ENSMUSG00000020428.13 ENSMUSG00000020428 ENSMUST00000109286 Gabra6 protein_coding Interval_72461 chr17 29951134 29951456 + 0 NA intron (ENSMUSG00000043557.16, intron 1 of 20) protein_coding-intron (ENSMUSG00000043557.16, intron 1 of 20) -28025 ENSMUSG00000117528.1 ENSMUSG00000117528 ENSMUST00000234695 Gm50017 lincRNA Interval_34352 chr12 3557487 3558209 + 0 NA Intergenic Intergenic -14622 ENSMUSG00000071454.13 ENSMUSG00000071454 ENSMUST00000174293 Dtnb protein_coding Interval_163893 chr9 27759835 27760198 + 0 NA Intergenic Intergenic -31131 ENSMUSG00000062257.13 ENSMUSG00000062257 ENSMUST00000126845 Opcml protein_coding Interval_125824 chr5 74733682 74735145 + 0 NA promoter-TSS (ENSMUSG00000085497.2) lincRNA-promoter-TSS (ENSMUSG00000085497.2) 38 ENSMUSG00000085497.2 ENSMUSG00000085497 ENSMUST00000137731 Gm15985 lincRNA Interval_24868 chr11 40606087 40606451 + 0 NA Intergenic Intergenic -6449 ENSMUSG00000080835.1 ENSMUSG00000080835 ENSMUST00000119565 Gm12137 processed_pseudogene Interval_78010 chr18 6647050 6647288 + 0 NA Intergenic Intergenic 43540 ENSMUSG00000039540.9 ENSMUSG00000039540 ENSMUST00000234337 4921524L21Rik protein_coding Interval_169755 chr9 100983423 100985017 + 0 NA TTS (ENSMUSG00000032527.13) protein_coding-TTS (ENSMUSG00000032527.13) 28451 ENSMUSG00000037286.15 ENSMUSG00000037286 ENSMUST00000191345 Stag1 protein_coding Interval_84754 chr19 16266643 16267707 + 0 NA exon (ENSMUSG00000075268.2, exon 1 of 1) processed_pseudogene-exon (ENSMUSG00000075268.2, exon 1 of 1) 446 ENSMUSG00000075268.2 ENSMUSG00000075268 ENSMUST00000099988 Gm10819 processed_pseudogene Interval_69993 chr17 4137511 4137769 + 0 NA Intergenic Intergenic -15538 ENSMUSG00000116615.1 ENSMUSG00000116615 ENSMUST00000231319 4930548J01Rik processed_transcript Interval_17853 chr10 80410386 80410837 + 0 NA exon (ENSMUSG00000020167.14, exon 18 of 19) protein_coding-exon (ENSMUSG00000020167.14, exon 18 of 19) -3816 ENSMUSG00000020163.12 ENSMUSG00000020163 ENSMUST00000141683 Uqcr11 protein_coding Interval_122805 chr5 25653018 25654951 + 0 NA Intergenic Intergenic -5825 ENSMUSG00000106144.1 ENSMUSG00000106144 ENSMUST00000181398 Gm43972 lincRNA Interval_49722 chr13 114254825 114255012 + 0 NA Intergenic Intergenic -12278 ENSMUSG00000114655.1 ENSMUSG00000114655 ENSMUST00000225060 4631422I05Rik TEC Interval_4407 chr1 73953578 73953862 + 0 NA exon (ENSMUSG00000055322.16, exon 19 of 35) protein_coding-exon (ENSMUSG00000055322.16, exon 19 of 35) -98145 ENSMUSG00000098504.1 ENSMUSG00000098504 ENSMUST00000183826 Mir6351 miRNA Interval_34088 chr11 120448253 120449280 + 0 NA exon (ENSMUSG00000025386.2, exon 3 of 4) protein_coding-exon (ENSMUSG00000025386.2, exon 3 of 4) 4686 ENSMUSG00000025386.2 ENSMUSG00000025386 ENSMUST00000026452 Pde6g protein_coding Interval_153492 chr7 145187327 145187548 + 0 NA intron (ENSMUSG00000048677.9, intron 20 of 20) protein_coding-intron (ENSMUSG00000048677.9, intron 20 of 20) 20643 ENSMUSG00000109305.1 ENSMUSG00000109305 ENSMUST00000207841 Smim38 protein_coding Interval_119250 chr4 136451798 136452020 + 0 NA Intergenic Intergenic -10341 ENSMUSG00000066178.4 ENSMUSG00000066178 ENSMUST00000084593 6030445D17Rik lincRNA Interval_98717 chr2 154475856 154476382 + 0 NA intron (ENSMUSG00000038533.15, intron 1 of 2) protein_coding-intron (ENSMUSG00000038533.15, intron 1 of 10) 39277 ENSMUSG00000038533.15 ENSMUSG00000038533 ENSMUST00000139506 Cbfa2t2 protein_coding Interval_89531 chr2 21949109 21949499 + 0 NA Intergenic Intergenic -118522 ENSMUSG00000081467.1 ENSMUSG00000081467 ENSMUST00000119183 Gm13337 processed_pseudogene Interval_131350 chr5 136647478 136648024 + 0 NA Intergenic Intergenic -50028 ENSMUSG00000005474.9 ENSMUSG00000005474 ENSMUST00000197849 Myl10 protein_coding Interval_3959 chr1 65081980 65082412 + 0 NA promoter-TSS (ENSMUSG00000073658.4) protein_coding-promoter-TSS (ENSMUSG00000073658.4) 92 ENSMUSG00000073658.4 ENSMUSG00000073658 ENSMUST00000027090 Crygb protein_coding Interval_121889 chr5 9163537 9163819 + 0 NA Intergenic Intergenic -1929 ENSMUSG00000042508.16 ENSMUSG00000042508 ENSMUST00000185100 Dmtf1 protein_coding Interval_35884 chr12 31591852 31592193 + 0 NA exon (ENSMUSG00000020650.15, exon 8 of 8) protein_coding-exon (ENSMUSG00000020650.15, exon 8 of 8) 9727 ENSMUSG00000020650.15 ENSMUSG00000020650 ENSMUST00000218543 Bcap29 protein_coding Interval_46215 chr13 62575458 62575793 + 0 NA Intergenic Intergenic -17030 ENSMUSG00000074865.11 ENSMUSG00000074865 ENSMUST00000221279 Zfp934 protein_coding Interval_151286 chr7 120677075 120678325 + 0 NA promoter-TSS (ENSMUSG00000046096.7) protein_coding-promoter-TSS (ENSMUSG00000046096.7) -1006 ENSMUSG00000097343.2 ENSMUSG00000097343 ENSMUST00000207861 9030407P20Rik processed_transcript Interval_102128 chr3 18245277 18245635 + 0 NA Intergenic Intergenic -2118 ENSMUSG00000039519.6 ENSMUSG00000039519 ENSMUST00000035625 Cyp7b1 protein_coding Interval_89155 chr2 17594812 17595031 + 0 NA intron (ENSMUSG00000053702.16, intron 2 of 6) protein_coding-intron (ENSMUSG00000053702.16, intron 2 of 6) 31407 ENSMUSG00000099161.1 ENSMUSG00000099161 ENSMUST00000184784 Mir6419 miRNA Interval_6075 chr1 96082221 96082417 + 0 NA Intergenic Intergenic -60561 ENSMUSG00000100062.1 ENSMUSG00000100062 ENSMUST00000190901 1700063A18Rik lincRNA Interval_156585 chr8 53456799 53457121 + 0 NA intron (ENSMUSG00000110362.1, intron 1 of 3) lincRNA-intron (ENSMUSG00000110362.1, intron 1 of 3) 20742 ENSMUSG00000110362.1 ENSMUSG00000110362 ENSMUST00000210731 Gm45554 lincRNA Interval_96698 chr2 127247469 127248930 + 0 NA promoter-TSS (ENSMUSG00000003662.10) protein_coding-promoter-TSS (ENSMUSG00000003662.10) 230 ENSMUSG00000034850.15 ENSMUSG00000034850 ENSMUST00000174288 Tmem127 protein_coding Interval_134185 chr6 22439583 22440656 + 0 NA Intergenic Intergenic -96206 ENSMUSG00000029672.16 ENSMUSG00000029672 ENSMUST00000168965 Fam3c protein_coding Interval_3060 chr1 52789743 52790764 + 0 NA intron (ENSMUSG00000026102.9, intron 3 of 3) protein_coding-intron (ENSMUSG00000026102.9, intron 5 of 5) 9235 ENSMUSG00000026102.9 ENSMUSG00000026102 ENSMUST00000159725 Inpp1 protein_coding Interval_134705 chr6 30535399 30535624 + 0 NA Intergenic Intergenic -8974 ENSMUSG00000071553.10 ENSMUSG00000071553 ENSMUST00000144282 Cpa2 protein_coding Interval_12757 chr10 4910727 4912637 + 0 NA intron (ENSMUSG00000019768.16, intron 6 of 9) protein_coding-intron (ENSMUSG00000019768.16, intron 5 of 8) 124774 ENSMUSG00000093189.1 ENSMUSG00000093189 ENSMUST00000175448 Gm25694 ribozyme Interval_57410 chr15 10633288 10635456 + 0 NA intron (ENSMUSG00000022246.14, intron 2 of 16) protein_coding-intron (ENSMUSG00000022246.14, intron 2 of 17) 34035 ENSMUSG00000115667.1 ENSMUSG00000115667 ENSMUST00000228059 Gm10389 antisense Interval_125473 chr5 67426304 67428380 + 0 NA promoter-TSS (ENSMUSG00000097840.1) antisense-promoter-TSS (ENSMUSG00000097840.1) 275 ENSMUSG00000092060.4 ENSMUSG00000092060 ENSMUST00000201972 Bend4 protein_coding Interval_83172 chr18 82535474 82536204 + 0 NA intron (ENSMUSG00000041607.17, intron 3 of 5) protein_coding-intron (ENSMUSG00000041607.17, intron 3 of 6) -11818 ENSMUSG00000061684.6 ENSMUSG00000061684 ENSMUST00000130005 Rpl21-ps8 processed_pseudogene Interval_147514 chr7 67915660 67916722 + 0 NA Intergenic Intergenic -29606 ENSMUSG00000109152.1 ENSMUSG00000109152 ENSMUST00000208544 Gm44666 processed_pseudogene Interval_92537 chr2 60414141 60414857 + 0 NA Intergenic Intergenic 2974 ENSMUSG00000087283.1 ENSMUSG00000087283 ENSMUST00000131457 Gm13580 antisense Interval_126885 chr5 96719588 96719894 + 0 NA intron (ENSMUSG00000034687.8, intron 47 of 73) protein_coding-intron (ENSMUSG00000034687.8, intron 47 of 73) 19623 ENSMUSG00000106526.1 ENSMUSG00000106526 ENSMUST00000200077 Gm42604 antisense Interval_69208 chr16 91352071 91352599 + 0 NA Intergenic Intergenic -2551 ENSMUSG00000065811.1 ENSMUSG00000065811 ENSMUST00000083877 Gm24695 snRNA Interval_23310 chr11 21299535 21299758 + 0 NA promoter-TSS (ENSMUSG00000020128.15) protein_coding-promoter-TSS (ENSMUSG00000020128.15) 4086 ENSMUSG00000084048.1 ENSMUSG00000084048 ENSMUST00000120479 Gm12042 processed_pseudogene Interval_126744 chr5 92484961 92485171 + 0 NA intron (ENSMUSG00000029426.8, intron 2 of 11) protein_coding-intron (ENSMUSG00000029426.8, intron 2 of 11) 21767 ENSMUSG00000029426.8 ENSMUSG00000029426 ENSMUST00000201253 Scarb2 protein_coding Interval_143389 chr7 6320691 6321505 + 0 NA intron (ENSMUSG00000030443.16, intron 3 of 3) protein_coding-intron (ENSMUSG00000030443.16, intron 4 of 4) 8165 ENSMUSG00000030443.16 ENSMUSG00000030443 ENSMUST00000127658 Zfp583 protein_coding Interval_60525 chr15 74640123 74640770 + 0 NA Intergenic Intergenic 32124 ENSMUSG00000022602.14 ENSMUSG00000022602 ENSMUST00000110009 Arc protein_coding Interval_24724 chr11 36251875 36252312 + 0 NA intron (ENSMUSG00000049336.16, intron 5 of 28) protein_coding-intron (ENSMUSG00000049336.16, intron 5 of 28) -25948 ENSMUSG00000086375.1 ENSMUSG00000086375 ENSMUST00000123278 Gm12127 antisense Interval_26131 chr11 54673352 54673578 + 0 NA intron (ENSMUSG00000037533.20, intron 14 of 17) protein_coding-intron (ENSMUSG00000037533.20, intron 13 of 16) -14892 ENSMUSG00000093341.2 ENSMUSG00000093341 ENSMUST00000175600 Gm26116 miRNA Interval_161771 chr8 122667068 122667403 + 0 NA intron (ENSMUSG00000006362.16, intron 1 of 1) protein_coding-intron (ENSMUSG00000006362.16, intron 1 of 10) 16604 ENSMUSG00000085917.1 ENSMUSG00000085917 ENSMUST00000128586 Gm15899 processed_pseudogene Interval_66381 chr16 33496415 33496893 + 0 NA exon (ENSMUSG00000022811.17, exon 9 of 9) protein_coding-exon (ENSMUSG00000022811.17, exon 9 of 9) 115791 ENSMUSG00000022811.17 ENSMUSG00000022811 ENSMUST00000089677 Zfp148 protein_coding Interval_103072 chr3 35026893 35028937 + 0 NA Intergenic Intergenic -105264 ENSMUSG00000098862.1 ENSMUSG00000098862 ENSMUST00000183357 Mir6378 miRNA Interval_95861 chr2 117338581 117338789 + 0 NA intron (ENSMUSG00000027347.18, intron 1 of 16) protein_coding-intron (ENSMUSG00000027347.18, intron 1 of 16) 4192 ENSMUSG00000027347.18 ENSMUSG00000027347 ENSMUST00000110898 Rasgrp1 protein_coding Interval_113836 chr4 59234020 59235895 + 0 NA Intergenic Intergenic 22301 ENSMUSG00000028381.8 ENSMUSG00000028381 ENSMUST00000155153 Ugcg protein_coding Interval_53901 chr14 63228201 63228511 + 0 NA intron (ENSMUSG00000021944.15, intron 2 of 6) protein_coding-intron (ENSMUSG00000021944.15, intron 2 of 6) -34831 ENSMUSG00000035121.6 ENSMUSG00000035121 ENSMUST00000223723 Neil2 protein_coding Interval_124790 chr5 54051886 54052111 + 0 NA intron (ENSMUSG00000039156.19, intron 1 of 12) protein_coding-intron (ENSMUSG00000039156.19, intron 1 of 11) 43082 ENSMUSG00000107105.1 ENSMUSG00000107105 ENSMUST00000201566 Gm15820 processed_pseudogene Interval_91063 chr2 34771402 34772650 + 0 NA promoter-TSS (ENSMUSG00000026864.13) protein_coding-promoter-TSS (ENSMUSG00000026864.13) -1640 ENSMUSG00000026864.13 ENSMUSG00000026864 ENSMUST00000129333 Hspa5 protein_coding Interval_155914 chr8 41007252 41008291 + 0 NA intron (ENSMUSG00000045636.16, intron 2 of 2) protein_coding-intron (ENSMUSG00000045636.16, intron 3 of 9) 8984 ENSMUSG00000045636.16 ENSMUSG00000045636 ENSMUST00000155055 Mtus1 protein_coding Interval_93183 chr2 70938602 70940024 + 0 NA Intergenic Intergenic 42871 ENSMUSG00000041975.17 ENSMUSG00000041975 ENSMUST00000124273 Mettl8 protein_coding Interval_144010 chr7 18947955 18951784 + 0 NA intron (ENSMUSG00000030411.16, intron 2 of 3) protein_coding-intron (ENSMUSG00000030411.16, intron 2 of 3) 23981 ENSMUSG00000030411.16 ENSMUSG00000030411 ENSMUST00000220302 Nova2 protein_coding Interval_151177 chr7 119003682 119004032 + 0 NA Intergenic Intergenic -19213 ENSMUSG00000008734.9 ENSMUSG00000008734 ENSMUST00000207614 Gprc5b protein_coding Interval_52440 chr14 46409711 46411154 + 0 NA Intergenic Intergenic 22879 ENSMUSG00000086746.2 ENSMUSG00000086746 ENSMUST00000228667 Gm15222 antisense Interval_41995 chr13 6137052 6138027 + 0 NA Intergenic Intergenic -63757 ENSMUSG00000113483.1 ENSMUSG00000113483 ENSMUST00000221918 Gm47548 lincRNA Interval_47268 chr13 80256150 80257042 + 0 NA Intergenic Intergenic 95268 ENSMUSG00000114462.1 ENSMUSG00000114462 ENSMUST00000226097 Gm8371 processed_pseudogene Interval_173434 chrX 93627300 93627754 + 0 NA intron (ENSMUSG00000006678.6, intron 1 of 1) protein_coding-intron (ENSMUSG00000006678.6, intron 1 of 36) -11087 ENSMUSG00000087255.2 ENSMUSG00000087255 ENSMUST00000121255 Gm6985 processed_pseudogene Interval_146058 chr7 43593996 43594438 + 0 NA TTS (ENSMUSG00000030469.10) protein_coding-TTS (ENSMUSG00000030469.10) -12992 ENSMUSG00000055102.15 ENSMUSG00000055102 ENSMUST00000116324 Zfp819 protein_coding Interval_101838 chr3 9855942 9856310 + 0 NA Intergenic Intergenic -22763 ENSMUSG00000027508.15 ENSMUSG00000027508 ENSMUST00000159497 Pag1 protein_coding Interval_139711 chr6 107950895 107951767 + 0 NA Intergenic Intergenic 62650 ENSMUSG00000108009.1 ENSMUSG00000108009 ENSMUST00000205154 Gm44279 processed_pseudogene Interval_99974 chr2 166193738 166195399 + 0 NA Intergenic Intergenic -3706 ENSMUSG00000085618.1 ENSMUSG00000085618 ENSMUST00000148017 Gm11466 lincRNA Interval_15526 chr10 50771717 50772300 + 0 NA intron (ENSMUSG00000038774.9, intron 3 of 5) protein_coding-intron (ENSMUSG00000038774.9, intron 36 of 41) 13824 ENSMUSG00000112918.1 ENSMUSG00000112918 ENSMUST00000220079 Gm18120 processed_pseudogene Interval_128168 chr5 111438133 111439396 + 0 NA intron (ENSMUSG00000070576.4, intron 1 of 1) protein_coding-intron (ENSMUSG00000070576.4, intron 1 of 1) 15175 ENSMUSG00000106560.1 ENSMUSG00000106560 ENSMUST00000196957 Gm43119 TEC Interval_89583 chr2 23002260 23003304 + 0 NA intron (ENSMUSG00000058835.14, intron 1 of 10) protein_coding-intron (ENSMUSG00000058835.14, intron 1 of 9) 16885 ENSMUSG00000083650.1 ENSMUSG00000083650 ENSMUST00000120528 Gm13357 processed_pseudogene Interval_45861 chr13 58600251 58602298 + 0 NA intron (ENSMUSG00000021553.14, intron 1 of 3) protein_coding-intron (ENSMUSG00000021553.14, intron 1 of 17) 9603 ENSMUSG00000021553.14 ENSMUSG00000021553 ENSMUST00000151675 Slc28a3 protein_coding Interval_54415 chr14 69141098 69141493 + 0 NA Intergenic Intergenic -17376 ENSMUSG00000098713.1 ENSMUSG00000098713 ENSMUST00000184266 Rps2-ps5 processed_pseudogene Interval_133921 chr6 15684563 15685246 + 0 NA Intergenic Intergenic -35757 ENSMUSG00000041390.18 ENSMUSG00000041390 ENSMUST00000128849 Mdfic protein_coding Interval_94821 chr2 94891189 94891531 + 0 NA Intergenic Intergenic -99024 ENSMUSG00000077281.1 ENSMUSG00000077281 ENSMUST00000104093 Gm26396 snoRNA Interval_59794 chr15 59326215 59327731 + 0 NA exon (ENSMUSG00000022351.14, exon 2 of 2) protein_coding-exon (ENSMUSG00000022351.14, exon 2 of 2) 11896 ENSMUSG00000022351.14 ENSMUSG00000022351 ENSMUST00000161953 Sqle protein_coding Interval_116708 chr4 116763582 116764338 + 0 NA intron (ENSMUSG00000033985.17, intron 4 of 10) protein_coding-intron (ENSMUSG00000033985.17, intron 3 of 10) -7803 ENSMUSG00000033985.17 ENSMUSG00000033985 ENSMUST00000142529 Tesk2 protein_coding Interval_43750 chr13 36012005 36012773 + 0 NA intron (ENSMUSG00000114857.1, intron 2 of 2) protein_coding-intron (ENSMUSG00000046573.7, intron 2 of 2) 16936 ENSMUSG00000114857.1 ENSMUSG00000114857 ENSMUST00000225071 Gm48770 antisense Interval_110106 chr3 153348669 153350403 + 0 NA intron (ENSMUSG00000052544.9, intron 3 of 4) protein_coding-intron (ENSMUSG00000052544.9, intron 2 of 2) 35823 ENSMUSG00000099114.1 ENSMUSG00000099114 ENSMUST00000184201 Gm27405 miRNA Interval_40708 chr12 107769349 107769592 + 0 NA intron (ENSMUSG00000086975.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000086975.1, intron 1 of 1) 14571 ENSMUSG00000086975.1 ENSMUSG00000086975 ENSMUST00000134448 Gm15208 lincRNA Interval_79660 chr18 34307793 34308334 + 0 NA intron (ENSMUSG00000005871.15, intron 12 of 13) protein_coding-intron (ENSMUSG00000005871.15, intron 14 of 15) -23113 ENSMUSG00000014504.16 ENSMUSG00000014504 ENSMUST00000142010 Srp19 protein_coding Interval_118409 chr4 131235045 131235478 + 0 NA Intergenic Intergenic -4016 ENSMUSG00000088041.1 ENSMUSG00000088041 ENSMUST00000157416 Gm25261 snoRNA Interval_46302 chr13 63553797 63554370 + 0 NA intron (ENSMUSG00000021466.12, intron 2 of 6) protein_coding-intron (ENSMUSG00000021466.12, intron 2 of 22) 13971 ENSMUSG00000102282.1 ENSMUSG00000102282 ENSMUST00000195845 A930032L01Rik TEC Interval_159989 chr8 105617699 105617969 + 0 NA exon (ENSMUSG00000038604.9, exon 13 of 22) protein_coding-exon (ENSMUSG00000038604.9, exon 13 of 22) 2368 ENSMUSG00000089432.1 ENSMUSG00000089432 ENSMUST00000158807 Mir1966 miRNA Interval_166223 chr9 57600650 57601412 + 0 NA exon (ENSMUSG00000039714.9, exon 3 of 3) protein_coding-exon (ENSMUSG00000039714.9, exon 3 of 3) 4047 ENSMUSG00000039714.9 ENSMUSG00000039714 ENSMUST00000215487 Cplx3 protein_coding Interval_113019 chr4 46918619 46919712 + 0 NA intron (ENSMUSG00000039809.10, intron 1 of 18) protein_coding-intron (ENSMUSG00000039809.10, intron 1 of 18) -59263 ENSMUSG00000039809.10 ENSMUSG00000039809 ENSMUST00000206773 Gabbr2 protein_coding Interval_21409 chr10 128419841 128421149 + 0 NA intron (ENSMUSG00000025373.14, intron 1 of 6) protein_coding-intron (ENSMUSG00000025373.14, intron 2 of 6) 5317 ENSMUSG00000025373.14 ENSMUSG00000025373 ENSMUST00000218371 Rnf41 protein_coding Interval_127803 chr5 107926018 107927064 + 0 NA intron (ENSMUSG00000029270.10, intron 1 of 4) protein_coding-intron (ENSMUSG00000029270.10, intron 1 of 4) 19196 ENSMUSG00000077426.1 ENSMUSG00000077426 ENSMUST00000104238 Gm26387 snoRNA Interval_170480 chr9 108239928 108240436 + 0 NA intron (ENSMUSG00000039952.15, intron 1 of 2) protein_coding-intron (ENSMUSG00000039952.15, intron 2 of 3) 23569 ENSMUSG00000039952.15 ENSMUSG00000039952 ENSMUST00000193701 Dag1 protein_coding Interval_153819 chr8 8987643 8987973 + 0 NA Intergenic Intergenic -55109 ENSMUSG00000109346.1 ENSMUSG00000109346 ENSMUST00000209045 Gm44515 lincRNA Interval_58865 chr15 39359337 39359708 + 0 NA intron (ENSMUSG00000037386.16, intron 3 of 25) protein_coding-intron (ENSMUSG00000037386.16, intron 3 of 26) -50944 ENSMUSG00000095297.1 ENSMUSG00000095297 ENSMUST00000102078 Gm25381 miRNA Interval_50463 chr14 13731857 13732939 + 0 NA Intergenic Intergenic 45753 ENSMUSG00000098694.1 ENSMUSG00000098694 ENSMUST00000184558 Gm27506 miRNA Interval_54838 chr14 75730087 75730296 + 0 NA TTS (ENSMUSG00000034893.9) protein_coding-TTS (ENSMUSG00000034893.9) 2796 ENSMUSG00000034893.9 ENSMUSG00000034893 ENSMUST00000228081 Cog3 protein_coding Interval_136964 chr6 65120232 65121244 + 0 NA exon (ENSMUSG00000029919.5, exon 1 of 1) protein_coding-exon (ENSMUSG00000029919.5, exon 1 of 1) 2189 ENSMUSG00000029919.5 ENSMUSG00000029919 ENSMUST00000170252 Hpgds protein_coding Interval_86013 chr19 34907703 34908635 + 0 NA Intergenic Intergenic -30316 ENSMUSG00000033610.16 ENSMUSG00000033610 ENSMUST00000237577 Pank1 protein_coding Interval_150040 chr7 105336831 105337298 + 0 NA exon (ENSMUSG00000043948.2, exon 1 of 1) protein_coding-exon (ENSMUSG00000043948.2, exon 1 of 1) -2960 ENSMUSG00000050266.6 ENSMUSG00000050266 ENSMUST00000061920 Olfr690 protein_coding Interval_39979 chr12 100211198 100211403 + 0 NA Intergenic Intergenic 11771 ENSMUSG00000001175.16 ENSMUSG00000001175 ENSMUST00000127300 Calm1 protein_coding Interval_160110 chr8 106509319 106509582 + 0 NA exon (ENSMUSG00000054069.8, exon 3 of 3) lincRNA-exon (ENSMUSG00000054069.8, exon 3 of 3) -1441 ENSMUSG00000061048.8 ENSMUSG00000061048 ENSMUST00000080797 Cdh3 protein_coding Interval_110027 chr3 152586658 152587394 + 0 NA intron (ENSMUSG00000039058.11, intron 6 of 13) protein_coding-intron (ENSMUSG00000039058.11, intron 6 of 13) -60274 ENSMUSG00000039058.11 ENSMUSG00000039058 ENSMUST00000198552 Ak5 protein_coding Interval_45143 chr13 52649770 52650136 + 0 NA Intergenic Intergenic 66450 ENSMUSG00000021457.14 ENSMUSG00000021457 ENSMUST00000140339 Syk protein_coding Interval_21900 chr11 5061282 5062743 + 0 NA exon (ENSMUSG00000034201.13, exon 5 of 5) protein_coding-exon (ENSMUSG00000034201.13, exon 5 of 5) 2839 ENSMUSG00000034201.13 ENSMUSG00000034201 ENSMUST00000151936 Gas2l1 protein_coding Interval_89032 chr2 14818687 14819170 + 0 NA intron (ENSMUSG00000057914.15, intron 1 of 3) protein_coding-intron (ENSMUSG00000057914.15, intron 2 of 13) -6390 ENSMUSG00000085281.3 ENSMUSG00000085281 ENSMUST00000140537 Gm13316 processed_pseudogene Interval_115967 chr4 106650534 106651603 + 0 NA promoter-TSS (ENSMUSG00000043572.7) protein_coding-promoter-TSS (ENSMUSG00000043572.7) -35 ENSMUSG00000043572.7 ENSMUSG00000043572 ENSMUST00000058905 Pars2 protein_coding Interval_125363 chr5 66465994 66466942 + 0 NA intron (ENSMUSG00000029207.16, intron 2 of 3) protein_coding-intron (ENSMUSG00000029207.16, intron 3 of 17) -22045 ENSMUSG00000106772.1 ENSMUSG00000106772 ENSMUST00000200971 Gm43794 TEC Interval_53862 chr14 62879422 62880288 + 0 NA intron (ENSMUSG00000014547.10, intron 1 of 3) protein_coding-intron (ENSMUSG00000014547.10, intron 1 of 11) 10141 ENSMUSG00000084465.1 ENSMUSG00000084465 ENSMUST00000122516 n-R5s47 rRNA Interval_59463 chr15 53328281 53328596 + 0 NA intron (ENSMUSG00000061731.9, intron 1 of 10) protein_coding-intron (ENSMUSG00000061731.9, intron 1 of 10) -55481 ENSMUSG00000087805.2 ENSMUSG00000087805 ENSMUST00000157180 Gm27926 snRNA Interval_70202 chr17 6134424 6134747 + 0 NA intron (ENSMUSG00000034377.10, intron 2 of 2) protein_coding-intron (ENSMUSG00000034377.10, intron 1 of 5) -2180 ENSMUSG00000058542.3 ENSMUSG00000058542 ENSMUST00000078419 Gm15590 processed_pseudogene Interval_147543 chr7 68205465 68206208 + 0 NA intron (ENSMUSG00000005533.10, intron 15 of 20) protein_coding-intron (ENSMUSG00000005533.10, intron 15 of 20) -6002 ENSMUSG00000005533.10 ENSMUSG00000005533 ENSMUST00000208871 Igf1r protein_coding Interval_65667 chr16 25004861 25005042 + 0 NA Intergenic Intergenic -54688 ENSMUSG00000096960.1 ENSMUSG00000096960 ENSMUST00000181655 A230028O05Rik lincRNA Interval_109688 chr3 146004539 146005094 + 0 NA intron (ENSMUSG00000036863.12, intron 3 of 6) protein_coding-intron (ENSMUSG00000036863.12, intron 3 of 6) 16679 ENSMUSG00000036863.12 ENSMUSG00000036863 ENSMUST00000195918 Syde2 protein_coding Interval_59356 chr15 51852754 51854738 + 0 NA intron (ENSMUSG00000022312.11, intron 1 of 2) protein_coding-intron (ENSMUSG00000022312.11, intron 1 of 7) -17489 ENSMUSG00000022312.11 ENSMUSG00000022312 ENSMUST00000228583 Eif3h protein_coding Interval_159457 chr8 94848374 94849038 + 0 NA intron (ENSMUSG00000031782.15, intron 3 of 7) protein_coding-intron (ENSMUSG00000031782.15, intron 3 of 8) -4416 ENSMUSG00000031782.15 ENSMUSG00000031782 ENSMUST00000161208 Coq9 protein_coding Interval_96963 chr2 130051658 130052023 + 0 NA Intergenic Intergenic -19884 ENSMUSG00000089152.1 ENSMUSG00000089152 ENSMUST00000158527 Gm22424 snoRNA Interval_16787 chr10 68156221 68157802 + 0 NA intron (ENSMUSG00000019947.10, intron 4 of 10) protein_coding-intron (ENSMUSG00000019947.10, intron 4 of 10) 121729 ENSMUSG00000019947.10 ENSMUSG00000019947 ENSMUST00000218425 Arid5b protein_coding Interval_172673 chrX 42006434 42006700 + 0 NA Intergenic Intergenic -53354 ENSMUSG00000025860.15 ENSMUSG00000025860 ENSMUST00000026978 Xiap protein_coding Interval_73567 chr17 40566788 40567240 + 0 NA intron (ENSMUSG00000090897.2, intron 2 of 4) protein_coding-intron (ENSMUSG00000090897.2, intron 2 of 4) 5507 ENSMUSG00000090897.2 ENSMUSG00000090897 ENSMUST00000167713 Gm44501 protein_coding Interval_51005 chr14 21576416 21576810 + 0 NA intron (ENSMUSG00000021767.19, intron 2 of 5) protein_coding-intron (ENSMUSG00000021767.19, intron 2 of 16) 59738 ENSMUSG00000021767.19 ENSMUSG00000021767 ENSMUST00000226589 Kat6b protein_coding Interval_154009 chr8 11839550 11839907 + 0 NA promoter-TSS (ENSMUSG00000031512.15) protein_coding-promoter-TSS (ENSMUSG00000031512.15) 672 ENSMUSG00000086500.1 ENSMUSG00000086500 ENSMUST00000152264 Gm15875 bidirectional_promoter_lncRNA Interval_87274 chr19 47332554 47333030 + 0 NA intron (ENSMUSG00000053617.12, intron 6 of 13) protein_coding-intron (ENSMUSG00000053617.12, intron 6 of 14) -59203 ENSMUSG00000098786.1 ENSMUSG00000098786 ENSMUST00000183658 Mir6995 miRNA Interval_37830 chr12 72333784 72334119 + 0 NA intron (ENSMUSG00000021087.18, intron 1 of 8) protein_coding-intron (ENSMUSG00000021087.18, intron 1 of 8) -97403 ENSMUSG00000021087.18 ENSMUSG00000021087 ENSMUST00000221756 Rtn1 protein_coding Interval_148502 chr7 81885173 81886469 + 0 NA exon (ENSMUSG00000025104.13, exon 6 of 6) protein_coding-exon (ENSMUSG00000025104.13, exon 6 of 6) 11617 ENSMUSG00000109243.1 ENSMUSG00000109243 ENSMUST00000208201 Gm45867 TEC Interval_54768 chr14 74910428 74910669 + 0 NA intron (ENSMUSG00000068015.8, intron 1 of 18) protein_coding-intron (ENSMUSG00000068015.8, intron 1 of 19) -15897 ENSMUSG00000115002.1 ENSMUSG00000115002 ENSMUST00000227773 Gm10847 antisense Interval_102033 chr3 15336438 15336626 + 0 NA Intergenic Intergenic -4230 ENSMUSG00000078783.1 ENSMUSG00000078783 ENSMUST00000108361 Gm9733 protein_coding Interval_109658 chr3 145787537 145787915 + 0 NA intron (ENSMUSG00000028194.15, intron 1 of 5) protein_coding-intron (ENSMUSG00000028194.15, intron 1 of 5) -22753 ENSMUSG00000028194.15 ENSMUSG00000028194 ENSMUST00000127193 Ddah1 protein_coding Interval_61399 chr15 81347694 81348429 + 0 NA intron (ENSMUSG00000022404.8, intron 1 of 4) protein_coding-intron (ENSMUSG00000022404.8, intron 1 of 8) 12716 ENSMUSG00000022404.8 ENSMUSG00000022404 ENSMUST00000231078 Slc25a17 protein_coding Interval_155846 chr8 40152487 40153219 + 0 NA Intergenic Intergenic 136139 ENSMUSG00000109815.1 ENSMUSG00000109815 ENSMUST00000209880 Gm7082 processed_pseudogene Interval_165314 chr9 46210194 46211149 + 0 NA exon (ENSMUSG00000034135.15, exon 19 of 23) protein_coding-exon (ENSMUSG00000034135.15, exon 19 of 23) -18050 ENSMUSG00000032083.8 ENSMUSG00000032083 ENSMUST00000132155 Apoa1 protein_coding Interval_44961 chr13 50964229 50967214 + 0 NA Intergenic Intergenic -48365 ENSMUSG00000084609.2 ENSMUSG00000084609 ENSMUST00000122660 Gm22199 misc_RNA Interval_170510 chr9 108411370 108412573 + 0 NA intron (ENSMUSG00000047220.5, intron 5 of 6) protein_coding-intron (ENSMUSG00000047220.5, intron 5 of 6) 16513 ENSMUSG00000047220.5 ENSMUSG00000047220 ENSMUST00000076592 Ccdc36 protein_coding Interval_133105 chr5 149843479 149844478 + 0 NA Intergenic Intergenic -3769 ENSMUSG00000107214.3 ENSMUSG00000107214 ENSMUST00000200855 4930500F04Rik processed_transcript Interval_72812 chr17 32305332 32305747 + 0 NA exon (ENSMUSG00000024045.6, exon 14 of 14) protein_coding-exon (ENSMUSG00000024045.6, exon 14 of 14) 10582 ENSMUSG00000024045.6 ENSMUSG00000024045 ENSMUST00000235702 Akap8 protein_coding Interval_63467 chr15 101240793 101241130 + 0 NA Intergenic Intergenic -15775 ENSMUSG00000097915.2 ENSMUSG00000097915 ENSMUST00000229239 A330009N23Rik antisense Interval_144879 chr7 28727253 28727962 + 0 NA intron (ENSMUSG00000030598.15, intron 2 of 6) protein_coding-intron (ENSMUSG00000030598.15, intron 2 of 6) -4893 ENSMUSG00000030598.15 ENSMUSG00000030598 ENSMUST00000167118 Fbxo17 protein_coding Interval_170573 chr9 108953160 108955050 + 0 NA promoter-TSS (ENSMUSG00000025650.13) protein_coding-promoter-TSS (ENSMUSG00000025650.13) -3564 ENSMUSG00000103754.1 ENSMUSG00000103754 ENSMUST00000193607 Gm37284 TEC Interval_134502 chr6 29177970 29180041 + 0 NA intron (ENSMUSG00000079654.3, intron 1 of 4) protein_coding-intron (ENSMUSG00000079654.3, intron 1 of 4) 579 ENSMUSG00000079654.3 ENSMUSG00000079654 ENSMUST00000159200 Prrt4 protein_coding Interval_122309 chr5 21141243 21141780 + 0 NA Intergenic Intergenic 10435 ENSMUSG00000106104.1 ENSMUSG00000106104 ENSMUST00000197733 Gm42660 TEC Interval_45865 chr13 58622192 58623130 + 0 NA Intergenic Intergenic -11784 ENSMUSG00000021553.14 ENSMUSG00000021553 ENSMUST00000151675 Slc28a3 protein_coding Interval_33520 chr11 117003958 117004509 + 0 NA Intergenic Intergenic 35955 ENSMUSG00000086902.7 ENSMUSG00000086902 ENSMUST00000152401 Gm11728 lincRNA Interval_100706 chr2 171852214 171852861 + 0 NA Intergenic Intergenic 109594 ENSMUSG00000086823.7 ENSMUSG00000086823 ENSMUST00000125465 1700028P15Rik processed_transcript Interval_37918 chr12 73044326 73047220 + 0 NA promoter-TSS (ENSMUSG00000051367.8) protein_coding-promoter-TSS (ENSMUSG00000051367.8) -2958 ENSMUSG00000051367.8 ENSMUSG00000051367 ENSMUST00000175677 Six1 protein_coding Interval_63014 chr15 98647359 98647581 + 0 NA TTS (ENSMUSG00000003360.15) protein_coding-TTS (ENSMUSG00000003360.15) 15424 ENSMUSG00000003360.15 ENSMUSG00000003360 ENSMUST00000228973 Ddx23 protein_coding Interval_76776 chr17 83969419 83970243 + 0 NA Intergenic Intergenic -8901 ENSMUSG00000117564.1 ENSMUSG00000117564 ENSMUST00000234390 Gm41638 lincRNA Interval_25185 chr11 44909302 44909585 + 0 NA intron (ENSMUSG00000057098.14, intron 9 of 15) protein_coding-intron (ENSMUSG00000057098.14, intron 9 of 15) 207485 ENSMUSG00000084773.1 ENSMUSG00000084773 ENSMUST00000143869 Gm12159 lincRNA Interval_163091 chr9 15188256 15190239 + 0 NA Intergenic Intergenic 22538 ENSMUSG00000077384.1 ENSMUSG00000077384 ENSMUST00000104196 Gm22658 snRNA Interval_25340 chr11 46521055 46523780 + 0 NA Intergenic Intergenic -1795 ENSMUSG00000078924.1 ENSMUSG00000078924 ENSMUST00000109228 Gm12169 protein_coding Interval_720 chr1 10138589 10139159 + 0 NA exon (ENSMUSG00000067851.11, exon 38 of 38) protein_coding-exon (ENSMUSG00000067851.11, exon 38 of 38) 2827 ENSMUSG00000067851.11 ENSMUSG00000067851 ENSMUST00000186720 Arfgef1 protein_coding Interval_42004 chr13 6435209 6436481 + 0 NA Intergenic Intergenic 39673 ENSMUSG00000101540.2 ENSMUSG00000101540 ENSMUST00000220779 Gm28465 lincRNA Interval_44693 chr13 47210436 47210755 + 0 NA intron (ENSMUSG00000038068.15, intron 2 of 7) protein_coding-intron (ENSMUSG00000038068.15, intron 2 of 7) 16770 ENSMUSG00000038068.15 ENSMUSG00000038068 ENSMUST00000110111 Rnf144b protein_coding Interval_141856 chr6 134953939 134954147 + 0 NA exon (ENSMUSG00000098318.7, exon 2 of 2) lincRNA-exon (ENSMUSG00000098318.7, exon 2 of 2) -23931 ENSMUSG00000107730.1 ENSMUSG00000107730 ENSMUST00000203300 Gm44238 lincRNA Interval_36969 chr12 55778510 55778788 + 0 NA intron (ENSMUSG00000021027.17, intron 7 of 39) protein_coding-intron (ENSMUSG00000021027.17, intron 7 of 40) 37878 ENSMUSG00000112393.1 ENSMUSG00000112393 ENSMUST00000217762 Gm48655 TEC Interval_42937 chr13 21505963 21506776 + 0 NA exon (ENSMUSG00000082396.4, exon 1 of 2) transcribed_processed_pseudogene-exon (ENSMUSG00000082396.4, exon 1 of 2) 164 ENSMUSG00000082396.4 ENSMUSG00000082396 ENSMUST00000118425 Zfp389 transcribed_processed_pseudogene Interval_172685 chrX 42148716 42151090 + 0 NA promoter-TSS (ENSMUSG00000025862.14) protein_coding-promoter-TSS (ENSMUSG00000025862.14) -251 ENSMUSG00000025862.14 ENSMUSG00000025862 ENSMUST00000128799 Stag2 protein_coding Interval_60333 chr15 72970004 72971468 + 0 NA intron (ENSMUSG00000047921.17, intron 8 of 16) protein_coding-intron (ENSMUSG00000047921.17, intron 8 of 21) 57379 ENSMUSG00000096173.2 ENSMUSG00000096173 ENSMUST00000166418 Gm3150 processed_pseudogene Interval_34602 chr12 7521729 7522002 + 0 NA Intergenic Intergenic -103741 ENSMUSG00000112754.1 ENSMUSG00000112754 ENSMUST00000218817 Gm9139 processed_pseudogene Interval_145911 chr7 41626465 41627718 + 0 NA exon (ENSMUSG00000091474.2, exon 6 of 6) protein_coding-exon (ENSMUSG00000091474.2, exon 6 of 6) 15107 ENSMUSG00000091474.2 ENSMUSG00000091474 ENSMUST00000206757 2610021A01Rik protein_coding Interval_27340 chr11 66628174 66628737 + 0 NA Intergenic Intergenic 64848 ENSMUSG00000080978.2 ENSMUSG00000080978 ENSMUST00000121380 Gm12297 processed_pseudogene Interval_120741 chr4 150371510 150372320 + 0 NA intron (ENSMUSG00000039852.17, intron 1 of 22) protein_coding-intron (ENSMUSG00000039852.17, intron 1 of 22) 50722 ENSMUSG00000089292.1 ENSMUSG00000089292 ENSMUST00000158667 Gm23209 snRNA Interval_54772 chr14 74933860 74935155 + 0 NA intron (ENSMUSG00000068015.8, intron 1 of 18) protein_coding-intron (ENSMUSG00000068015.8, intron 1 of 19) 8062 ENSMUSG00000115002.1 ENSMUSG00000115002 ENSMUST00000227773 Gm10847 antisense Interval_145920 chr7 41780340 41781019 + 0 NA Intergenic Intergenic -7769 ENSMUSG00000092451.3 ENSMUSG00000092451 ENSMUST00000174814 Vmn2r-ps56 unprocessed_pseudogene Interval_79789 chr18 35124705 35125206 + 0 NA intron (ENSMUSG00000037815.7, intron 1 of 3) protein_coding-intron (ENSMUSG00000037815.7, intron 1 of 17) -37332 ENSMUSG00000117727.1 ENSMUSG00000117727 ENSMUST00000238134 Gm3587 lincRNA Interval_133723 chr6 9864664 9865111 + 0 NA Intergenic Intergenic 307967 ENSMUSG00000107459.1 ENSMUSG00000107459 ENSMUST00000203122 Gm5110 processed_pseudogene Interval_116361 chr4 110256976 110257982 + 0 NA intron (ENSMUSG00000028546.17, intron 1 of 3) protein_coding-intron (ENSMUSG00000028546.17, intron 1 of 6) 30048 ENSMUSG00000028546.17 ENSMUSG00000028546 ENSMUST00000142722 Elavl4 protein_coding Interval_2062 chr1 36209262 36209827 + 0 NA intron (ENSMUSG00000037470.14, intron 8 of 18) protein_coding-intron (ENSMUSG00000037470.14, intron 8 of 40) 35176 ENSMUSG00000037470.14 ENSMUSG00000037470 ENSMUST00000192159 Uggt1 protein_coding Interval_148840 chr7 89212716 89212938 + 0 NA intron (ENSMUSG00000039428.11, intron 3 of 5) protein_coding-intron (ENSMUSG00000039428.11, intron 5 of 14) 4270 ENSMUSG00000109576.1 ENSMUSG00000109576 ENSMUST00000208963 Gm44704 TEC Interval_95707 chr2 114555194 114555982 + 0 NA intron (ENSMUSG00000057147.13, intron 5 of 6) protein_coding-intron (ENSMUSG00000057147.13, intron 5 of 7) -98837 ENSMUSG00000084785.1 ENSMUSG00000084785 ENSMUST00000153726 Gm13972 processed_transcript Interval_157350 chr8 69774573 69775441 + 0 NA promoter-TSS (ENSMUSG00000043090.18) protein_coding-promoter-TSS (ENSMUSG00000043090.18) -96 ENSMUSG00000043090.18 ENSMUSG00000043090 ENSMUST00000137573 Zfp866 protein_coding Interval_55493 chr14 88883139 88883364 + 0 NA Intergenic Intergenic 247218 ENSMUSG00000115623.1 ENSMUSG00000115623 ENSMUST00000227074 Gm41225 lincRNA Interval_155190 chr8 27319230 27320374 + 0 NA Intergenic Intergenic 23747 ENSMUSG00000110154.1 ENSMUSG00000110154 ENSMUST00000209480 Gm9731 processed_pseudogene Interval_116668 chr4 116557001 116558128 + 0 NA promoter-TSS (ENSMUSG00000034042.16) protein_coding-promoter-TSS (ENSMUSG00000034042.16) -4449 ENSMUSG00000055900.14 ENSMUSG00000055900 ENSMUST00000069674 Tmem69 protein_coding Interval_85464 chr19 26747383 26748312 + 0 NA promoter-TSS (ENSMUSG00000024921.17) protein_coding-promoter-TSS (ENSMUSG00000024921.17) -555 ENSMUSG00000024921.17 ENSMUSG00000024921 ENSMUST00000208984 Smarca2 protein_coding Interval_32089 chr11 105197526 105198061 + 0 NA intron (ENSMUSG00000020694.17, intron 2 of 5) protein_coding-intron (ENSMUSG00000020694.17, intron 2 of 20) -11060 ENSMUSG00000020694.17 ENSMUSG00000020694 ENSMUST00000146910 Tlk2 protein_coding Interval_86075 chr19 36347817 36349729 + 0 NA promoter-TSS (ENSMUSG00000114859.1) antisense-promoter-TSS (ENSMUSG00000114859.1) 464 ENSMUSG00000024805.16 ENSMUSG00000024805 ENSMUST00000225185 Pcgf5 protein_coding Interval_11331 chr1 180991850 180992555 + 0 NA intron (ENSMUSG00000038776.13, intron 3 of 4) protein_coding-intron (ENSMUSG00000038776.13, intron 6 of 8) 3968 ENSMUSG00000038776.13 ENSMUSG00000038776 ENSMUST00000147585 Ephx1 protein_coding Interval_40202 chr12 102524550 102525367 + 0 NA Intergenic Intergenic -33110 ENSMUSG00000021194.6 ENSMUSG00000021194 ENSMUST00000223100 Chga protein_coding Interval_79460 chr18 32067214 32068499 + 0 NA promoter-TSS (ENSMUSG00000024384.4) protein_coding-promoter-TSS (ENSMUSG00000024384.4) -15410 ENSMUSG00000024384.4 ENSMUSG00000024384 ENSMUST00000212458 Iws1 protein_coding Interval_52344 chr14 45299334 45299646 + 0 NA promoter-TSS (ENSMUSG00000021831.9) protein_coding-promoter-TSS (ENSMUSG00000021831.9) 2249 ENSMUSG00000021831.9 ENSMUSG00000021831 ENSMUST00000228777 Ero1l protein_coding Interval_106122 chr3 93411575 93412617 + 0 NA intron (ENSMUSG00000102476.1, intron 1 of 3) lincRNA-intron (ENSMUSG00000102476.1, intron 1 of 3) 9332 ENSMUSG00000104171.1 ENSMUSG00000104171 ENSMUST00000192475 Gm18296 processed_pseudogene Interval_13773 chr10 21975289 21975597 + 0 NA intron (ENSMUSG00000019970.15, intron 3 of 13) protein_coding-intron (ENSMUSG00000019970.15, intron 3 of 13) -3229 ENSMUSG00000019970.15 ENSMUSG00000019970 ENSMUST00000135195 Sgk1 protein_coding Interval_129232 chr5 118343704 118344477 + 0 NA Intergenic Intergenic 53240 ENSMUSG00000106812.1 ENSMUSG00000106812 ENSMUST00000201179 Gm28563 lincRNA Interval_108584 chr3 129289821 129290001 + 0 NA intron (ENSMUSG00000028024.14, intron 10 of 17) protein_coding-intron (ENSMUSG00000028024.14, intron 11 of 19) 4642 ENSMUSG00000106417.1 ENSMUSG00000106417 ENSMUST00000198498 Gm42628 processed_pseudogene Interval_98520 chr2 152950950 152952594 + 0 NA promoter-TSS (ENSMUSG00000042662.16) protein_coding-promoter-TSS (ENSMUSG00000042662.16) -7216 ENSMUSG00000042662.16 ENSMUSG00000042662 ENSMUST00000109811 Dusp15 protein_coding Interval_123381 chr5 32043346 32044263 + 0 NA intron (ENSMUSG00000052139.18, intron 10 of 11) protein_coding-intron (ENSMUSG00000052139.18, intron 12 of 13) -32941 ENSMUSG00000106894.1 ENSMUSG00000106894 ENSMUST00000201542 Gm17130 antisense Interval_131965 chr5 141240688 141242128 + 0 NA promoter-TSS (ENSMUSG00000039683.16) protein_coding-promoter-TSS (ENSMUSG00000039683.16) 27047 ENSMUSG00000083382.1 ENSMUSG00000083382 ENSMUST00000118634 Gm6433 processed_pseudogene Interval_46249 chr13 62964216 62965504 + 0 NA promoter-TSS (ENSMUSG00000021458.17) protein_coding-promoter-TSS (ENSMUSG00000021458.17) -15418 ENSMUSG00000113057.1 ENSMUSG00000113057 ENSMUST00000221723 Gm48812 lincRNA Interval_169693 chr9 100445892 100446642 + 0 NA Intergenic Intergenic -4055 ENSMUSG00000101287.1 ENSMUSG00000101287 ENSMUST00000187637 Gm28166 lincRNA Interval_44927 chr13 50083651 50084160 + 0 NA Intergenic Intergenic 20140 ENSMUSG00000113007.1 ENSMUSG00000113007 ENSMUST00000222187 Gm8700 processed_pseudogene Interval_99852 chr2 165325964 165327160 + 0 NA promoter-TSS (ENSMUSG00000017670.16) protein_coding-promoter-TSS (ENSMUSG00000017670.16) -14920 ENSMUSG00000017670.16 ENSMUSG00000017670 ENSMUST00000128690 Elmo2 protein_coding Interval_152192 chr7 130552424 130552910 + 0 NA intron (ENSMUSG00000040331.16, intron 1 of 7) protein_coding-intron (ENSMUSG00000030849.18, intron 2 of 6) -13459 ENSMUSG00000040331.16 ENSMUSG00000040331 ENSMUST00000161414 Nsmce4a protein_coding Interval_36349 chr12 41726928 41728134 + 0 NA intron (ENSMUSG00000056899.10, intron 5 of 5) protein_coding-intron (ENSMUSG00000056899.10, intron 6 of 6) 43137 ENSMUSG00000113438.1 ENSMUSG00000113438 ENSMUST00000221651 Gm47369 processed_pseudogene Interval_6623 chr1 118368086 118369293 + 0 NA Intergenic Intergenic 11377 ENSMUSG00000099936.1 ENSMUSG00000099936 ENSMUST00000190194 Gm28867 lincRNA Interval_136819 chr6 60935582 60936054 + 0 NA intron (ENSMUSG00000054641.10, intron 3 of 3) protein_coding-intron (ENSMUSG00000054641.10, intron 3 of 3) -8660 ENSMUSG00000054641.10 ENSMUSG00000054641 ENSMUST00000204333 Mmrn1 protein_coding Interval_76630 chr17 82964442 82965046 + 0 NA Intergenic Intergenic 8748 ENSMUSG00000117472.1 ENSMUSG00000117472 ENSMUST00000234284 Gm4601 processed_pseudogene Interval_162385 chr8 127674661 127675004 + 0 NA Intergenic Intergenic 77126 ENSMUSG00000088580.1 ENSMUSG00000088580 ENSMUST00000157955 Gm22968 rRNA Interval_103890 chr3 54579431 54579726 + 0 NA Intergenic Intergenic 54990 ENSMUSG00000104831.1 ENSMUSG00000104831 ENSMUST00000197444 B020017C02Rik processed_pseudogene Interval_148022 chr7 78327324 78327611 + 0 NA intron (ENSMUSG00000059146.12, intron 2 of 3) protein_coding-intron (ENSMUSG00000059146.12, intron 12 of 16) 73171 ENSMUSG00000108788.1 ENSMUSG00000108788 ENSMUST00000206993 4921513I08Rik antisense Interval_5579 chr1 89939392 89940672 + 0 NA Intergenic Intergenic 9771 ENSMUSG00000092627.2 ENSMUSG00000092627 ENSMUST00000189763 D130058E05Rik processed_transcript Interval_142811 chr6 145957598 145957886 + 0 NA promoter-TSS (ENSMUSG00000085414.1) antisense-promoter-TSS (ENSMUSG00000085414.1) -208 ENSMUSG00000085414.1 ENSMUSG00000085414 ENSMUST00000139089 Sspnos antisense Interval_143771 chr7 16212694 16213308 + 0 NA exon (ENSMUSG00000006019.15, exon 6 of 17) protein_coding-exon (ENSMUSG00000006019.15, exon 6 of 17) 9031 ENSMUSG00000006019.15 ENSMUSG00000006019 ENSMUST00000133518 Dhx34 protein_coding Interval_111148 chr4 13203712 13203911 + 0 NA Intergenic Intergenic 63239 ENSMUSG00000080359.2 ENSMUSG00000080359 ENSMUST00000116709 Gm26250 miRNA Interval_102904 chr3 32698047 32698697 + 0 NA Intergenic Intergenic -7926 ENSMUSG00000027671.14 ENSMUSG00000027671 ENSMUST00000153779 Actl6a protein_coding Interval_56468 chr14 118956495 118958065 + 0 NA intron (ENSMUSG00000022136.8, intron 2 of 11) protein_coding-intron (ENSMUSG00000022136.8, intron 2 of 11) 19304 ENSMUSG00000022136.8 ENSMUSG00000022136 ENSMUST00000022734 Dnajc3 protein_coding Interval_119648 chr4 138984963 138985158 + 0 NA intron (ENSMUSG00000041143.16, intron 2 of 12) protein_coding-intron (ENSMUSG00000041143.16, intron 2 of 15) 12151 ENSMUSG00000041143.16 ENSMUSG00000041143 ENSMUST00000124835 Tmco4 protein_coding Interval_97244 chr2 132593678 132594175 + 0 NA Intergenic Intergenic -4269 ENSMUSG00000074783.10 ENSMUSG00000074783 ENSMUST00000138751 AU019990 lincRNA Interval_62578 chr15 94831907 94832220 + 0 NA intron (ENSMUSG00000063296.5, intron 3 of 7) protein_coding-intron (ENSMUSG00000063296.5, intron 3 of 7) -150677 ENSMUSG00000095169.1 ENSMUSG00000095169 ENSMUST00000103977 Gm25546 snoRNA Interval_39290 chr12 86489862 86491438 + 0 NA intron (ENSMUSG00000021255.17, intron 2 of 5) protein_coding-intron (ENSMUSG00000021255.17, intron 3 of 6) 20533 ENSMUSG00000021255.17 ENSMUSG00000021255 ENSMUST00000136464 Esrrb protein_coding Interval_3960 chr1 65100001 65100862 + 0 NA TTS (ENSMUSG00000044429.8) protein_coding-TTS (ENSMUSG00000044429.8) 2929 ENSMUSG00000044429.8 ENSMUSG00000044429 ENSMUST00000061497 Cryga protein_coding Interval_30322 chr11 93608537 93609500 + 0 NA Intergenic Intergenic -41741 ENSMUSG00000082453.1 ENSMUSG00000082453 ENSMUST00000120917 Gm11502 processed_pseudogene Interval_146178 chr7 44538735 44539559 + 0 NA promoter-TSS (ENSMUSG00000038644.14) protein_coding-promoter-TSS (ENSMUSG00000038644.14) -969 ENSMUSG00000099330.1 ENSMUSG00000099330 ENSMUST00000184044 Mir7053 miRNA Interval_126601 chr5 90658008 90658519 + 0 NA Intergenic Intergenic -48462 ENSMUSG00000029370.10 ENSMUSG00000029370 ENSMUST00000201436 Rassf6 protein_coding Interval_87148 chr19 46452375 46452978 + 0 NA intron (ENSMUSG00000025231.17, intron 6 of 9) protein_coding-intron (ENSMUSG00000025231.17, intron 6 of 11) 51552 ENSMUSG00000025231.17 ENSMUSG00000025231 ENSMUST00000144341 Sufu protein_coding Interval_152772 chr7 137428606 137428894 + 0 NA Intergenic Intergenic -8915 ENSMUSG00000031068.8 ENSMUSG00000031068 ENSMUST00000211598 Glrx3 protein_coding Interval_57856 chr15 23373076 23373415 + 0 NA intron (ENSMUSG00000040420.15, intron 4 of 10) protein_coding-intron (ENSMUSG00000040420.15, intron 5 of 9) 41212 ENSMUSG00000115560.1 ENSMUSG00000115560 ENSMUST00000226326 Gm49191 antisense Interval_162311 chr8 126978788 126980681 + 0 NA Intergenic Intergenic 2498 ENSMUSG00000110648.1 ENSMUSG00000110648 ENSMUST00000211855 Gm38574 processed_pseudogene Interval_116643 chr4 116268673 116269298 + 0 NA intron (ENSMUSG00000111410.1, intron 3 of 9) protein_coding-intron (ENSMUSG00000028698.13, intron 3 of 9) 47367 ENSMUSG00000028698.13 ENSMUSG00000028698 ENSMUST00000106490 Pik3r3 protein_coding Interval_101851 chr3 10060560 10061010 + 0 NA Intergenic Intergenic -27325 ENSMUSG00000049230.8 ENSMUSG00000049230 ENSMUST00000061419 Gm9833 protein_coding Interval_29192 chr11 81299102 81299485 + 0 NA intron (ENSMUSG00000020704.13, intron 1 of 9) protein_coding-intron (ENSMUSG00000020704.13, intron 1 of 9) -85720 ENSMUSG00000086971.1 ENSMUSG00000086971 ENSMUST00000141593 4930527B05Rik antisense Interval_138322 chr6 87206095 87206343 + 0 NA intron (ENSMUSG00000033420.12, intron 6 of 6) protein_coding-intron (ENSMUSG00000033420.12, intron 13 of 17) -32210 ENSMUSG00000107436.1 ENSMUSG00000107436 ENSMUST00000204055 Gm44416 TEC Interval_40732 chr12 108002114 108006661 + 0 NA promoter-TSS (ENSMUSG00000048251.15) protein_coding-promoter-TSS (ENSMUSG00000048251.15) -973 ENSMUSG00000048251.15 ENSMUSG00000048251 ENSMUST00000109891 Bcl11b protein_coding Interval_141747 chr6 134188820 134190325 + 0 NA intron (ENSMUSG00000030199.16, intron 2 of 4) protein_coding-intron (ENSMUSG00000030199.16, intron 2 of 7) -17565 ENSMUSG00000091438.1 ENSMUSG00000091438 ENSMUST00000164616 Gm17088 antisense Interval_45514 chr13 55583168 55583753 + 0 NA intron (ENSMUSG00000058569.8, intron 1 of 5) protein_coding-intron (ENSMUSG00000058569.8, intron 1 of 5) -9716 ENSMUSG00000058569.8 ENSMUSG00000058569 ENSMUST00000225888 Tmed9 protein_coding Interval_10189 chr1 166939987 166940591 + 0 NA Intergenic Intergenic 6069 ENSMUSG00000086925.1 ENSMUSG00000086925 ENSMUST00000145247 Gm6286 processed_pseudogene Interval_132830 chr5 148180592 148181750 + 0 NA intron (ENSMUSG00000029651.16, intron 2 of 3) protein_coding-intron (ENSMUSG00000029651.16, intron 4 of 14) 3206 ENSMUSG00000066554.6 ENSMUSG00000066554 ENSMUST00000150411 Gm10167 processed_pseudogene Interval_25692 chr11 50809112 50809328 + 0 NA promoter-TSS (ENSMUSG00000088205.1) rRNA-promoter-TSS (ENSMUSG00000088205.1) -431 ENSMUSG00000088205.1 ENSMUSG00000088205 ENSMUST00000157580 Gm23392 rRNA Interval_107160 chr3 104027187 104027410 + 0 NA intron (ENSMUSG00000052539.15, intron 16 of 20) protein_coding-intron (ENSMUSG00000052539.15, intron 16 of 21) 30843 ENSMUSG00000104721.1 ENSMUSG00000104721 ENSMUST00000199859 Gm42696 sense_intronic Interval_130501 chr5 128443041 128443444 + 0 NA Intergenic Intergenic -1174 ENSMUSG00000106275.1 ENSMUSG00000106275 ENSMUST00000200324 Gm42495 lincRNA Interval_173688 chrX 101957528 101957725 + 0 NA intron (ENSMUSG00000079481.11, intron 2 of 2) protein_coding-intron (ENSMUSG00000079481.11, intron 1 of 7) -4171 ENSMUSG00000079481.11 ENSMUSG00000079481 ENSMUST00000129185 Nhsl2 protein_coding Interval_126811 chr5 93116337 93116690 + 0 NA intron (ENSMUSG00000058013.11, intron 1 of 9) protein_coding-intron (ENSMUSG00000058013.11, intron 1 of 9) 22977 ENSMUSG00000058013.11 ENSMUSG00000058013 ENSMUST00000201695 Septin11 protein_coding Interval_99024 chr2 156717336 156717618 + 0 NA intron (ENSMUSG00000086638.7, intron 1 of 3) protein_coding-intron (ENSMUSG00000061689.15, intron 5 of 10) 3432 ENSMUSG00000086638.7 ENSMUSG00000086638 ENSMUST00000130089 4930405A21Rik processed_transcript Interval_79940 chr18 36111160 36111372 + 0 NA intron (ENSMUSG00000060275.14, intron 1 of 9) protein_coding-intron (ENSMUSG00000060275.14, intron 2 of 7) 5615 ENSMUSG00000117852.1 ENSMUSG00000117852 ENSMUST00000235667 4930471G03Rik antisense Interval_53128 chr14 54609893 54610525 + 0 NA Intergenic Intergenic 6576 ENSMUSG00000076128.1 ENSMUSG00000076128 ENSMUST00000102174 Mir686 miRNA Interval_68042 chr16 64618712 64619736 + 0 NA Intergenic Intergenic -16816 ENSMUSG00000068167.6 ENSMUSG00000068167 ENSMUST00000089279 Csnka2ip protein_coding Interval_19413 chr10 99040355 99040578 + 0 NA exon (ENSMUSG00000112660.1, exon 1 of 1) TEC-exon (ENSMUSG00000112660.1, exon 1 of 1) 994 ENSMUSG00000112660.1 ENSMUSG00000112660 ENSMUST00000219298 Gm48761 TEC Interval_134089 chr6 19222173 19222831 + 0 NA Intergenic Intergenic 56341 ENSMUSG00000107217.1 ENSMUSG00000107217 ENSMUST00000200755 4930524B17Rik lincRNA Interval_99041 chr2 156815185 156816003 + 0 NA Intergenic Intergenic 24298 ENSMUSG00000087179.8 ENSMUSG00000087179 ENSMUST00000134838 Gm14230 lincRNA Interval_821 chr1 11864469 11864692 + 0 NA intron (ENSMUSG00000057715.13, intron 10 of 12) protein_coding-intron (ENSMUSG00000057715.13, intron 10 of 13) 160373 ENSMUSG00000103561.1 ENSMUSG00000103561 ENSMUST00000195360 Gm38069 TEC Interval_64755 chr16 15270414 15270952 + 0 NA Intergenic Intergenic -46775 ENSMUSG00000094472.1 ENSMUSG00000094472 ENSMUST00000178312 Gm21897 protein_coding Interval_165379 chr9 46910089 46910396 + 0 NA Intergenic Intergenic -3251 ENSMUSG00000099696.6 ENSMUSG00000099696 ENSMUST00000189828 2900052N01Rik lincRNA Interval_127582 chr5 105568300 105568683 + 0 NA intron (ENSMUSG00000054720.12, intron 1 of 2) protein_coding-intron (ENSMUSG00000054720.12, intron 2 of 3) -11949 ENSMUSG00000085771.1 ENSMUSG00000085771 ENSMUST00000150195 C230066G23Rik sense_intronic Interval_151097 chr7 118532603 118533516 + 0 NA intron (ENSMUSG00000030652.11, intron 1 of 5) protein_coding-intron (ENSMUSG00000030652.11, intron 1 of 5) 238 ENSMUSG00000030652.11 ENSMUSG00000030652 ENSMUST00000127700 Coq7 protein_coding Interval_58514 chr15 35353949 35354167 + 0 NA Intergenic Intergenic 19089 ENSMUSG00000115829.1 ENSMUSG00000115829 ENSMUST00000228236 Gm48960 antisense Interval_6878 chr1 120287722 120288977 + 0 NA Intergenic Intergenic -23094 ENSMUSG00000026389.16 ENSMUSG00000026389 ENSMUST00000112643 Steap3 protein_coding Interval_160566 chr8 110749671 110749977 + 0 NA intron (ENSMUSG00000031750.15, intron 2 of 7) protein_coding-intron (ENSMUSG00000031750.15, intron 2 of 6) -5168 ENSMUSG00000090039.1 ENSMUSG00000090039 ENSMUST00000162828 Gm15894 antisense Interval_148380 chr7 80888300 80889959 + 0 NA Intergenic Intergenic 12103 ENSMUSG00000025722.16 ENSMUSG00000025722 ENSMUST00000145923 Wdr73 protein_coding Interval_91322 chr2 37771548 37772276 + 0 NA Intergenic Intergenic -19259 ENSMUSG00000035403.10 ENSMUSG00000035403 ENSMUST00000137693 Crb2 protein_coding Interval_163302 chr9 20715058 20715863 + 0 NA intron (ENSMUSG00000032172.8, intron 1 of 5) protein_coding-intron (ENSMUSG00000032172.8, intron 1 of 5) 11477 ENSMUSG00000032172.8 ENSMUSG00000032172 ENSMUST00000215039 Olfm2 protein_coding Interval_65867 chr16 29906703 29908178 + 0 NA TTS (ENSMUSG00000097313.2) processed_transcript-TTS (ENSMUSG00000097313.2) 39314 ENSMUSG00000097313.2 ENSMUSG00000097313 ENSMUST00000232356 Gm26569 processed_transcript Interval_8214 chr1 136544036 136544284 + 0 NA intron (ENSMUSG00000104414.1, intron 2 of 4) lincRNA-intron (ENSMUSG00000104414.1, intron 2 of 4) 2555 ENSMUSG00000104414.1 ENSMUSG00000104414 ENSMUST00000194018 Gm37799 lincRNA Interval_84594 chr19 13982119 13982449 + 0 NA Intergenic Intergenic 36087 ENSMUSG00000098074.1 ENSMUSG00000098074 ENSMUST00000182766 Gm26993 processed_pseudogene Interval_155662 chr8 35849307 35850873 + 0 NA Intergenic Intergenic -24515 ENSMUSG00000055976.6 ENSMUSG00000055976 ENSMUST00000210370 Cldn23 protein_coding Interval_129323 chr5 119092555 119092877 + 0 NA Intergenic Intergenic -15518 ENSMUSG00000100573.1 ENSMUSG00000100573 ENSMUST00000190550 1700081H04Rik lincRNA Interval_171993 chr9 123269583 123270767 + 0 NA Intergenic Intergenic -9411 ENSMUSG00000054871.5 ENSMUSG00000054871 ENSMUST00000068140 Tmem158 protein_coding Interval_170627 chr9 109680575 109680741 + 0 NA intron (ENSMUSG00000074059.3, intron 9 of 9) protein_coding-intron (ENSMUSG00000074059.3, intron 9 of 9) -16006 ENSMUSG00000094992.1 ENSMUSG00000094992 ENSMUST00000163839 Fbxw25 protein_coding Interval_152507 chr7 133669262 133669512 + 0 NA intron (ENSMUSG00000039990.16, intron 2 of 2) protein_coding-intron (ENSMUSG00000039990.16, intron 24 of 24) 10674 ENSMUSG00000030981.9 ENSMUSG00000030981 ENSMUST00000122136 Mmp21 protein_coding Interval_51793 chr14 32227952 32228186 + 0 NA intron (ENSMUSG00000021911.16, intron 4 of 14) protein_coding-intron (ENSMUSG00000021911.16, intron 7 of 17) -2777 ENSMUSG00000115833.1 ENSMUSG00000115833 ENSMUST00000228947 Gm49196 processed_pseudogene Interval_103650 chr3 51397980 51398809 + 0 NA Intergenic Intergenic -1891 ENSMUSG00000037161.14 ENSMUSG00000037161 ENSMUST00000145938 Mgarp protein_coding Interval_89602 chr2 23166598 23166810 + 0 NA intron (ENSMUSG00000026775.9, intron 4 of 6) protein_coding-intron (ENSMUSG00000026775.9, intron 4 of 18) 10176 ENSMUSG00000026775.9 ENSMUSG00000026775 ENSMUST00000134342 Yme1l1 protein_coding Interval_96090 chr2 119707454 119708632 + 0 NA intron (ENSMUSG00000027304.9, intron 4 of 17) protein_coding-intron (ENSMUSG00000027304.9, intron 4 of 17) -2953 ENSMUSG00000027304.9 ENSMUSG00000027304 ENSMUST00000126984 Rtf1 protein_coding Interval_67655 chr16 55559685 55559925 + 0 NA Intergenic Intergenic 35083 ENSMUSG00000094020.1 ENSMUSG00000094020 ENSMUST00000179948 Gm23003 snRNA Interval_40375 chr12 104484468 104485551 + 0 NA Intergenic Intergenic 11678 ENSMUSG00000114826.2 ENSMUSG00000114826 ENSMUST00000224847 Gm10000 bidirectional_promoter_lncRNA Interval_53231 chr14 55438394 55439304 + 0 NA Intergenic Intergenic -18060 ENSMUSG00000060680.2 ENSMUSG00000060680 ENSMUST00000074642 Gm8894 processed_pseudogene Interval_37958 chr12 73347352 73347655 + 0 NA intron (ENSMUSG00000044712.15, intron 1 of 2) protein_coding-intron (ENSMUSG00000044712.15, intron 12 of 15) -7578 ENSMUSG00000113425.1 ENSMUSG00000113425 ENSMUST00000222671 Gm48653 lincRNA Interval_82124 chr18 67865085 67865294 + 0 NA intron (ENSMUSG00000024542.9, intron 16 of 25) protein_coding-intron (ENSMUSG00000024542.9, intron 35 of 45) -5138 ENSMUSG00000024542.9 ENSMUSG00000024542 ENSMUST00000225589 Cep192 protein_coding Interval_28018 chr11 72244107 72244867 + 0 NA intron (ENSMUSG00000020805.14, intron 10 of 10) protein_coding-intron (ENSMUSG00000020805.14, intron 11 of 11) 22106 ENSMUSG00000020805.14 ENSMUSG00000020805 ENSMUST00000207990 Slc13a5 protein_coding Interval_174420 chrX 152001335 152002619 + 0 NA promoter-TSS (ENSMUSG00000025260.10) protein_coding-promoter-TSS (ENSMUSG00000025260.10) -172 ENSMUSG00000025260.10 ENSMUSG00000025260 ENSMUST00000140804 Hsd17b10 protein_coding Interval_135128 chr6 36004739 36005112 + 0 NA Intergenic Intergenic 29595 ENSMUSG00000077246.1 ENSMUSG00000077246 ENSMUST00000104058 Gm23273 snoRNA Interval_69655 chr16 94931196 94932944 + 0 NA intron (ENSMUSG00000043301.16, intron 2 of 3) protein_coding-intron (ENSMUSG00000043301.16, intron 2 of 4) 62606 ENSMUSG00000095435.1 ENSMUSG00000095435 ENSMUST00000175509 Gm22745 miRNA Interval_51473 chr14 27877183 27877482 + 0 NA intron (ENSMUSG00000040640.11, intron 3 of 4) protein_coding-intron (ENSMUSG00000040640.11, intron 4 of 15) -1115 ENSMUSG00000109849.1 ENSMUSG00000109849 ENSMUST00000211470 Gm45645 antisense Interval_162588 chr9 5456306 5456906 + 0 NA Intergenic Intergenic 111130 ENSMUSG00000025887.10 ENSMUSG00000025887 ENSMUST00000151332 Casp12 protein_coding Interval_145308 chr7 31751246 31751831 + 0 NA Intergenic Intergenic 7349 ENSMUSG00000101371.1 ENSMUSG00000101371 ENSMUST00000188558 Gm9114 processed_pseudogene Interval_32954 chr11 113348816 113349156 + 0 NA intron (ENSMUSG00000041654.15, intron 6 of 9) protein_coding-intron (ENSMUSG00000041654.15, intron 7 of 10) -118991 ENSMUSG00000078251.2 ENSMUSG00000078251 ENSMUST00000105048 Gm16487 pseudogene Interval_52035 chr14 34737615 34738028 + 0 NA intron (ENSMUSG00000041408.18, intron 7 of 10) protein_coding-intron (ENSMUSG00000041408.18, intron 14 of 18) 550 ENSMUSG00000041408.18 ENSMUSG00000041408 ENSMUST00000174559 Wapl protein_coding Interval_3434 chr1 58335780 58336103 + 0 NA intron (ENSMUSG00000079554.2, intron 23 of 35) protein_coding-intron (ENSMUSG00000079554.2, intron 23 of 35) -20285 ENSMUSG00000089822.1 ENSMUSG00000089822 ENSMUST00000161126 Gm15759 antisense Interval_164712 chr9 40756147 40758254 + 0 NA intron (ENSMUSG00000111189.1, intron 2 of 2) protein_coding-intron (ENSMUSG00000032024.10, intron 1 of 6) 5055 ENSMUSG00000111189.1 ENSMUSG00000111189 ENSMUST00000216792 Gm48293 antisense Interval_174218 chrX 140009956 140010390 + 0 NA intron (ENSMUSG00000072944.11, intron 8 of 8) protein_coding-intron (ENSMUSG00000072944.11, intron 8 of 8) -11607 ENSMUSG00000031433.15 ENSMUSG00000031433 ENSMUST00000148703 Rbm41 protein_coding Interval_158904 chr8 87837494 87837724 + 0 NA intron (ENSMUSG00000045333.15, intron 3 of 3) protein_coding-intron (ENSMUSG00000045333.15, intron 2 of 6) 116253 ENSMUSG00000045333.15 ENSMUSG00000045333 ENSMUST00000173092 Zfp423 protein_coding Interval_18718 chr10 89661309 89661796 + 0 NA intron (ENSMUSG00000069539.11, intron 5 of 17) protein_coding-intron (ENSMUSG00000069539.11, intron 5 of 17) 24716 ENSMUSG00000069539.11 ENSMUSG00000069539 ENSMUST00000174429 Scyl2 protein_coding Interval_105741 chr3 89089724 89091483 + 0 NA promoter-TSS (ENSMUSG00000041263.14) protein_coding-promoter-TSS (ENSMUSG00000041263.14) -862 ENSMUSG00000041263.14 ENSMUSG00000041263 ENSMUST00000196043 Rusc1 protein_coding Interval_56427 chr14 118680844 118681322 + 0 NA intron (ENSMUSG00000032849.14, intron 1 of 29) protein_coding-intron (ENSMUSG00000032849.14, intron 1 of 30) 18409 ENSMUSG00000032849.14 ENSMUSG00000032849 ENSMUST00000227480 Abcc4 protein_coding Interval_9409 chr1 156888642 156888984 + 0 NA intron (ENSMUSG00000026594.14, intron 4 of 19) protein_coding-intron (ENSMUSG00000026594.14, intron 4 of 18) -12693 ENSMUSG00000102960.1 ENSMUSG00000102960 ENSMUST00000194053 Gm37943 TEC Interval_146978 chr7 56848014 56848905 + 0 NA intron (ENSMUSG00000055026.13, intron 5 of 9) protein_coding-intron (ENSMUSG00000055026.13, intron 5 of 9) 7392 ENSMUSG00000108450.1 ENSMUSG00000108450 ENSMUST00000205283 Gm44977 processed_pseudogene Interval_134717 chr6 30732070 30733343 + 0 NA promoter-TSS (ENSMUSG00000051855.15) protein_coding-promoter-TSS (ENSMUSG00000051855.15) -1712 ENSMUSG00000098260.1 ENSMUSG00000098260 ENSMUST00000183949 Gm27522 misc_RNA Interval_143671 chr7 14307153 14307720 + 0 NA exon (ENSMUSG00000098506.2, exon 1 of 1) processed_pseudogene-exon (ENSMUSG00000098506.2, exon 1 of 1) 2656 ENSMUSG00000098506.2 ENSMUSG00000098506 ENSMUST00000185066 Phf20-ps processed_pseudogene Interval_84982 chr19 20944231 20945101 + 0 NA intron (ENSMUSG00000118293.1, intron 3 of 4) protein_coding-intron (ENSMUSG00000024749.9, intron 1 of 20) 22274 ENSMUSG00000118293.1 ENSMUSG00000118293 ENSMUST00000238088 Gm32750 antisense Interval_24790 chr11 37988786 37989186 + 0 NA Intergenic Intergenic 48277 ENSMUSG00000093184.1 ENSMUSG00000093184 ENSMUST00000175443 Gm25693 miRNA Interval_137756 chr6 82111158 82111872 + 0 NA Intergenic Intergenic -58934 ENSMUSG00000087136.1 ENSMUSG00000087136 ENSMUST00000145950 Gm15864 antisense Interval_22980 chr11 18364627 18365124 + 0 NA Intergenic Intergenic -37204 ENSMUSG00000081302.1 ENSMUSG00000081302 ENSMUST00000119030 Gm12020 processed_pseudogene Interval_149035 chr7 92555215 92555530 + 0 NA Intergenic Intergenic -5777 ENSMUSG00000030613.13 ENSMUSG00000030613 ENSMUST00000085017 Ccdc90b protein_coding Interval_1544 chr1 25192031 25192234 + 0 NA intron (ENSMUSG00000033569.17, intron 19 of 30) protein_coding-intron (ENSMUSG00000033569.17, intron 18 of 29) 13564 ENSMUSG00000033569.17 ENSMUSG00000033569 ENSMUST00000189254 Adgrb3 protein_coding Interval_103377 chr3 41038694 41039065 + 0 NA TTS (ENSMUSG00000025762.16) protein_coding-TTS (ENSMUSG00000025762.16) 31791 ENSMUSG00000049940.7 ENSMUSG00000049940 ENSMUST00000124636 Pgrmc2 protein_coding Interval_32109 chr11 105285353 105286479 + 0 NA Intergenic Intergenic -54916 ENSMUSG00000020695.14 ENSMUSG00000020695 ENSMUST00000151135 Mrc2 protein_coding Interval_8740 chr1 150293984 150294689 + 0 NA Intergenic Intergenic -25075 ENSMUSG00000100690.1 ENSMUSG00000100690 ENSMUST00000191094 Gm4322 processed_pseudogene Interval_163417 chr9 21357146 21357758 + 0 NA Intergenic Intergenic 11732 ENSMUSG00000110915.1 ENSMUSG00000110915 ENSMUST00000217490 Gm36198 antisense Interval_21685 chr11 3692037 3692929 + 0 NA Intergenic Intergenic 5843 ENSMUSG00000083015.1 ENSMUSG00000083015 ENSMUST00000117960 Gm16518 processed_pseudogene Interval_99096 chr2 157170292 157170632 + 0 NA intron (ENSMUSG00000027641.13, intron 14 of 15) protein_coding-intron (ENSMUSG00000027641.13, intron 14 of 21) 1642 ENSMUSG00000084113.1 ENSMUSG00000084113 ENSMUST00000121195 Gm14277 processed_pseudogene Interval_147823 chr7 73824587 73825104 + 0 NA exon (ENSMUSG00000108448.2, exon 1 of 4) lincRNA-exon (ENSMUSG00000108448.2, exon 1 of 4) 5255 ENSMUSG00000105381.1 ENSMUSG00000105381 ENSMUST00000199151 Mir7234 miRNA Interval_152401 chr7 132780123 132781596 + 0 NA promoter-TSS (ENSMUSG00000030956.15) protein_coding-promoter-TSS (ENSMUSG00000030956.15) 21891 ENSMUSG00000030956.15 ENSMUSG00000030956 ENSMUST00000148303 Fam53b protein_coding Interval_111610 chr4 24551846 24552101 + 0 NA intron (ENSMUSG00000045751.16, intron 13 of 16) protein_coding-intron (ENSMUSG00000045751.16, intron 12 of 22) 55522 ENSMUSG00000045751.16 ENSMUSG00000045751 ENSMUST00000123984 Mms22l protein_coding Interval_67050 chr16 42172366 42173049 + 0 NA intron (ENSMUSG00000061080.11, intron 5 of 5) protein_coding-intron (ENSMUSG00000061080.11, intron 6 of 6) 12210 ENSMUSG00000116841.1 ENSMUSG00000116841 ENSMUST00000232237 Gm49737 processed_pseudogene Interval_86944 chr19 45116758 45117040 + 0 NA Intergenic Intergenic 29848 ENSMUSG00000117848.1 ENSMUSG00000117848 ENSMUST00000237139 Gm35867 lincRNA Interval_81730 chr18 64013460 64015581 + 0 NA Intergenic Intergenic 66900 ENSMUSG00000117673.1 ENSMUSG00000117673 ENSMUST00000237015 Gm6974 processed_pseudogene Interval_71189 chr17 21029173 21029389 + 0 NA TTS (ENSMUSG00000067942.6) protein_coding-TTS (ENSMUSG00000067942.6) 20237 ENSMUSG00000067942.6 ENSMUSG00000067942 ENSMUST00000232663 Zfp160 protein_coding Interval_47483 chr13 85188965 85190062 + 0 NA promoter-TSS (ENSMUSG00000021548.10) protein_coding-promoter-TSS (ENSMUSG00000021548.10) -21809 ENSMUSG00000021548.10 ENSMUSG00000021548 ENSMUST00000166932 Ccnh protein_coding Interval_148527 chr7 82121468 82121729 + 0 NA intron (ENSMUSG00000108868.1, intron 2 of 3) lincRNA-intron (ENSMUSG00000108868.1, intron 1 of 1) -1166 ENSMUSG00000108987.1 ENSMUSG00000108987 ENSMUST00000208140 Gm45056 lincRNA Interval_47256 chr13 79812536 79812739 + 0 NA Intergenic Intergenic -25440 ENSMUSG00000114505.1 ENSMUSG00000114505 ENSMUST00000223593 Gm48471 processed_pseudogene Interval_124850 chr5 56633394 56634682 + 0 NA Intergenic Intergenic -102052 ENSMUSG00000088734.1 ENSMUSG00000088734 ENSMUST00000158109 Gm23896 snoRNA Interval_32501 chr11 107951157 107951551 + 0 NA intron (ENSMUSG00000050965.14, intron 6 of 6) protein_coding-intron (ENSMUSG00000050965.14, intron 16 of 16) -5738 ENSMUSG00000118606.1 ENSMUSG00000118606 ENSMUST00000239337 AL645535.1 processed_pseudogene Interval_171484 chr9 118703251 118703490 + 0 NA intron (ENSMUSG00000039115.13, intron 3 of 5) protein_coding-intron (ENSMUSG00000039115.13, intron 15 of 27) -113175 ENSMUSG00000110676.1 ENSMUSG00000110676 ENSMUST00000212679 Gm45897 lincRNA Interval_410 chr1 5008097 5008383 + 0 NA intron (ENSMUSG00000002459.17, intron 1 of 3) protein_coding-intron (ENSMUSG00000002459.17, intron 1 of 4) 11139 ENSMUSG00000002459.17 ENSMUSG00000002459 ENSMUST00000133521 Rgs20 protein_coding Interval_9470 chr1 157458226 157460065 + 0 NA intron (ENSMUSG00000033488.11, intron 2 of 7) protein_coding-intron (ENSMUSG00000033488.11, intron 2 of 9) -2807 ENSMUSG00000033488.11 ENSMUSG00000033488 ENSMUST00000194220 Cryzl2 protein_coding Interval_43392 chr13 30001018 30001225 + 0 NA Intergenic Intergenic -16730 ENSMUSG00000016477.18 ENSMUSG00000016477 ENSMUST00000146092 E2f3 protein_coding Interval_95882 chr2 117946752 117947948 + 0 NA intron (ENSMUSG00000087203.7, intron 8 of 9) processed_transcript-intron (ENSMUSG00000087203.7, intron 8 of 9) -92493 ENSMUSG00000103266.1 ENSMUSG00000103266 ENSMUST00000193616 Gm36979 TEC Interval_8673 chr1 146805806 146806335 + 0 NA promoter-TSS (ENSMUSG00000087627.2) processed_transcript-promoter-TSS (ENSMUSG00000087627.2) 1270 ENSMUSG00000087627.2 ENSMUSG00000087627 ENSMUST00000191937 A230059L01Rik processed_transcript Interval_149690 chr7 100673340 100673604 + 0 NA Intergenic Intergenic -1616 ENSMUSG00000108866.1 ENSMUSG00000108866 ENSMUST00000208164 Gm35082 lincRNA Interval_71764 chr17 25929455 25930261 + 0 NA TTS (ENSMUSG00000025728.16) protein_coding-TTS (ENSMUSG00000025728.16) -10216 ENSMUSG00000025730.14 ENSMUSG00000025730 ENSMUST00000164738 Rab40c protein_coding Interval_153229 chr7 142647214 142647464 + 0 NA Intergenic Intergenic 7657 ENSMUSG00000070140.1 ENSMUSG00000070140 ENSMUST00000093631 Mir483 miRNA Interval_93974 chr2 80392044 80392881 + 0 NA Intergenic Intergenic -2435 ENSMUSG00000085921.1 ENSMUSG00000085921 ENSMUST00000138195 Gm13752 antisense Interval_10101 chr1 165803143 165803468 + 0 NA intron (ENSMUSG00000005763.15, intron 1 of 8) protein_coding-intron (ENSMUSG00000005763.15, intron 1 of 7) 6437 ENSMUSG00000094394.1 ENSMUSG00000094394 ENSMUST00000178130 Gm23402 snRNA Interval_165173 chr9 44991966 44993183 + 0 NA Intergenic Intergenic 6622 ENSMUSG00000032094.8 ENSMUSG00000032094 ENSMUST00000214800 Cd3d protein_coding Interval_68876 chr16 87738258 87739233 + 0 NA Intergenic Intergenic 22898 ENSMUSG00000088684.1 ENSMUSG00000088684 ENSMUST00000158059 Gm23994 snoRNA Interval_18174 chr10 83246400 83246751 + 0 NA intron (ENSMUSG00000034591.5, intron 10 of 10) protein_coding-intron (ENSMUSG00000034591.5, intron 10 of 10) 76308 ENSMUSG00000034591.5 ENSMUSG00000034591 ENSMUST00000154730 Slc41a2 protein_coding Interval_42326 chr13 12133473 12133665 + 0 NA Intergenic Intergenic -27185 ENSMUSG00000113347.1 ENSMUSG00000113347 ENSMUST00000220496 Gm47323 processed_pseudogene Interval_23732 chr11 25490664 25490935 + 0 NA Intergenic Intergenic 189536 ENSMUSG00000086439.1 ENSMUSG00000086439 ENSMUST00000145127 Gm12069 lincRNA Interval_25779 chr11 51658501 51659511 + 0 NA Intergenic Intergenic 8052 ENSMUSG00000052563.13 ENSMUSG00000052563 ENSMUST00000064493 D930048N14Rik protein_coding Interval_38465 chr12 79219723 79220145 + 0 NA intron (ENSMUSG00000021123.12, intron 5 of 5) protein_coding-intron (ENSMUSG00000021123.12, intron 6 of 6) 10987 ENSMUSG00000021123.12 ENSMUSG00000021123 ENSMUST00000140823 Rdh12 protein_coding Interval_101221 chr2 179569044 179569764 + 0 NA intron (ENSMUSG00000000305.12, intron 2 of 2) protein_coding-intron (ENSMUSG00000000305.12, intron 2 of 15) 44163 ENSMUSG00000083410.1 ENSMUSG00000083410 ENSMUST00000120800 Gm14300 processed_pseudogene Interval_8161 chr1 136165163 136165634 + 0 NA TTS (ENSMUSG00000041642.18) protein_coding-TTS (ENSMUSG00000041642.18) 5040 ENSMUSG00000041642.18 ENSMUSG00000041642 ENSMUST00000165333 Kif21b protein_coding Interval_75474 chr17 67031482 67031867 + 0 NA intron (ENSMUSG00000033278.10, intron 3 of 3) protein_coding-intron (ENSMUSG00000033278.10, intron 7 of 32) -5439 ENSMUSG00000093508.1 ENSMUSG00000093508 ENSMUST00000176783 Mir5709 miRNA Interval_65784 chr16 28839693 28840807 + 0 NA intron (ENSMUSG00000051065.9, intron 1 of 1) protein_coding-intron (ENSMUSG00000051065.9, intron 1 of 1) -3883 ENSMUSG00000051065.9 ENSMUSG00000051065 ENSMUST00000232571 Mb21d2 protein_coding Interval_153200 chr7 142355482 142355690 + 0 NA TTS (ENSMUSG00000045777.14) protein_coding-TTS (ENSMUSG00000045777.14) 16683 ENSMUSG00000045777.14 ENSMUSG00000045777 ENSMUST00000123543 Ifitm10 protein_coding Interval_15661 chr10 53238269 53238659 + 0 NA intron (ENSMUSG00000112835.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000112835.1, intron 1 of 2) 3277 ENSMUSG00000112835.1 ENSMUSG00000112835 ENSMUST00000219101 Gm36173 lincRNA Interval_157687 chr8 72296730 72297122 + 0 NA Intergenic Intergenic 8334 ENSMUSG00000070713.5 ENSMUSG00000070713 ENSMUST00000075602 Gm10282 protein_coding Interval_110991 chr4 11071910 11072279 + 0 NA TTS (ENSMUSG00000050323.14) protein_coding-TTS (ENSMUSG00000050323.14) 4089 ENSMUSG00000050323.14 ENSMUSG00000050323 ENSMUST00000141019 Ndufaf6 protein_coding Interval_160968 chr8 116507598 116508406 + 0 NA intron (ENSMUSG00000034467.7, intron 2 of 3) protein_coding-intron (ENSMUSG00000034467.7, intron 2 of 3) 3028 ENSMUSG00000034467.7 ENSMUSG00000034467 ENSMUST00000078170 Dynlrb2 protein_coding Interval_123380 chr5 32036003 32036194 + 0 NA intron (ENSMUSG00000052139.18, intron 10 of 11) protein_coding-intron (ENSMUSG00000052139.18, intron 12 of 13) -25235 ENSMUSG00000106894.1 ENSMUSG00000106894 ENSMUST00000201542 Gm17130 antisense Interval_134571 chr6 29659087 29659303 + 0 NA Intergenic Intergenic -48833 ENSMUSG00000001763.14 ENSMUSG00000001763 ENSMUST00000137925 Tspan33 protein_coding Interval_48319 chr13 98136017 98136618 + 0 NA intron (ENSMUSG00000021662.11, intron 2 of 34) protein_coding-intron (ENSMUSG00000021662.11, intron 2 of 35) 117840 ENSMUSG00000041747.3 ENSMUSG00000041747 ENSMUST00000224842 Utp15 protein_coding Interval_27847 chr11 70386323 70387142 + 0 NA Intergenic Intergenic 23299 ENSMUSG00000018921.11 ENSMUSG00000018921 ENSMUST00000135148 Pelp1 protein_coding Interval_31493 chr11 100991151 100991782 + 0 NA Intergenic Intergenic -18021 ENSMUSG00000019302.16 ENSMUSG00000019302 ENSMUST00000127810 Atp6v0a1 protein_coding Interval_162647 chr9 7252721 7253315 + 0 NA Intergenic Intergenic -14639 ENSMUSG00000111615.1 ENSMUSG00000111615 ENSMUST00000215932 Gm47741 processed_pseudogene Interval_7770 chr1 133543344 133544077 + 0 NA Intergenic Intergenic 14231 ENSMUSG00000101004.1 ENSMUSG00000101004 ENSMUST00000188004 Gm8596 processed_pseudogene Interval_71446 chr17 23789851 23791177 + 0 NA promoter-TSS (ENSMUSG00000039218.17) protein_coding-promoter-TSS (ENSMUSG00000039218.17) -4462 ENSMUSG00000023911.12 ENSMUSG00000023911 ENSMUST00000127144 Flywch2 protein_coding Interval_29774 chr11 86700971 86701575 + 0 NA intron (ENSMUSG00000047126.17, intron 1 of 1) protein_coding-intron (ENSMUSG00000047126.17, intron 30 of 31) 17288 ENSMUSG00000072582.9 ENSMUSG00000072582 ENSMUST00000108021 Ptrh2 protein_coding Interval_68533 chr16 78455953 78457321 + 0 NA Intergenic Intergenic 23902 ENSMUSG00000116539.1 ENSMUSG00000116539 ENSMUST00000231464 Gm49603 TEC Interval_15176 chr10 43120988 43121904 + 0 NA intron (ENSMUSG00000038248.8, intron 4 of 6) protein_coding-intron (ENSMUSG00000038248.8, intron 4 of 6) -32770 ENSMUSG00000099893.1 ENSMUSG00000099893 ENSMUST00000187332 Gm29245 TEC Interval_50437 chr14 13198460 13198777 + 0 NA intron (ENSMUSG00000051729.12, intron 2 of 3) processed_transcript-intron (ENSMUSG00000051729.12, intron 2 of 3) -27900 ENSMUSG00000051729.12 ENSMUSG00000051729 ENSMUST00000140967 Gm5087 processed_transcript Interval_91104 chr2 35113643 35114273 + 0 NA intron (ENSMUSG00000057110.15, intron 3 of 42) protein_coding-intron (ENSMUSG00000057110.15, intron 3 of 10) -13269 ENSMUSG00000035875.15 ENSMUSG00000035875 ENSMUST00000154817 AI182371 protein_coding Interval_21094 chr10 126222123 126222577 + 0 NA Intergenic Intergenic -32767 ENSMUSG00000112387.1 ENSMUSG00000112387 ENSMUST00000217671 1700021G15Rik lincRNA Interval_22014 chr11 5782066 5782863 + 0 NA TTS (ENSMUSG00000083844.8) transcribed_unprocessed_pseudogene-TTS (ENSMUSG00000083844.8) -6024 ENSMUSG00000020476.14 ENSMUSG00000020476 ENSMUST00000102928 Dbnl protein_coding Interval_106130 chr3 93493710 93495028 + 0 NA Intergenic Intergenic 5931 ENSMUSG00000104135.1 ENSMUSG00000104135 ENSMUST00000195295 Gm36953 processed_pseudogene Interval_51349 chr14 26604769 26606516 + 0 NA intron (ENSMUSG00000040818.10, intron 1 of 5) protein_coding-intron (ENSMUSG00000040818.10, intron 7 of 19) 971 ENSMUSG00000040818.10 ENSMUSG00000040818 ENSMUST00000225206 Dennd6a protein_coding Interval_79852 chr18 35582730 35583076 + 0 NA intron (ENSMUSG00000037236.16, intron 10 of 14) protein_coding-intron (ENSMUSG00000037236.16, intron 10 of 14) 7996 ENSMUSG00000102496.1 ENSMUSG00000102496 ENSMUST00000193225 Gm36989 TEC Interval_89006 chr2 14295217 14296532 + 0 NA intron (ENSMUSG00000026712.3, intron 15 of 29) protein_coding-intron (ENSMUSG00000026712.3, intron 15 of 29) -32687 ENSMUSG00000026712.3 ENSMUSG00000026712 ENSMUST00000146168 Mrc1 protein_coding Interval_118194 chr4 129460830 129462080 + 0 NA promoter-TSS (ENSMUSG00000040859.14) protein_coding-promoter-TSS (ENSMUSG00000040859.14) -229 ENSMUSG00000040859.14 ENSMUSG00000040859 ENSMUST00000145168 Bsdc1 protein_coding Interval_160261 chr8 107528231 107530135 + 0 NA intron (ENSMUSG00000031930.11, intron 3 of 3) protein_coding-intron (ENSMUSG00000031930.11, intron 8 of 23) -22061 ENSMUSG00000065439.1 ENSMUSG00000065439 ENSMUST00000083505 Mir140 miRNA Interval_64991 chr16 17729925 17730151 + 0 NA intron (ENSMUSG00000012114.17, intron 1 of 4) protein_coding-intron (ENSMUSG00000012114.17, intron 1 of 4) -4131 ENSMUSG00000116936.1 ENSMUSG00000116936 ENSMUST00000231811 Bod1-ps processed_pseudogene Interval_51695 chr14 31464077 31464804 + 0 NA Intergenic Intergenic -5215 ENSMUSG00000115283.1 ENSMUSG00000115283 ENSMUST00000227978 Gm49252 processed_pseudogene Interval_31471 chr11 100873928 100875571 + 0 NA exon (ENSMUSG00000004043.14, exon 6 of 6) protein_coding-exon (ENSMUSG00000004043.14, exon 6 of 6) 14264 ENSMUSG00000004043.14 ENSMUSG00000004043 ENSMUST00000135272 Stat5a protein_coding Interval_136837 chr6 61188912 61189321 + 0 NA intron (ENSMUSG00000039578.17, intron 1 of 1) protein_coding-intron (ENSMUSG00000039578.17, intron 1 of 10) -14591 ENSMUSG00000097924.2 ENSMUSG00000097924 ENSMUST00000181288 A730020E08Rik bidirectional_promoter_lncRNA Interval_36662 chr12 51839000 51839992 + 0 NA TTS (ENSMUSG00000112746.1) processed_pseudogene-TTS (ENSMUSG00000112746.1) 1125 ENSMUSG00000112746.1 ENSMUSG00000112746 ENSMUST00000218295 Gm19309 processed_pseudogene Interval_108749 chr3 131027572 131027832 + 0 NA Intergenic Intergenic -1332 ENSMUSG00000104859.1 ENSMUSG00000104859 ENSMUST00000197848 A430072C10Rik TEC Interval_53806 chr14 62007901 62008097 + 0 NA Intergenic Intergenic -4320 ENSMUSG00000114368.1 ENSMUSG00000114368 ENSMUST00000224570 Gm47953 processed_pseudogene Interval_92000 chr2 52417708 52418122 + 0 NA intron (ENSMUSG00000036093.7, intron 1 of 5) protein_coding-intron (ENSMUSG00000036093.7, intron 1 of 5) -5600 ENSMUSG00000036093.7 ENSMUSG00000036093 ENSMUST00000130357 Arl5a protein_coding Interval_32503 chr11 107979725 107979940 + 0 NA promoter-TSS (ENSMUSG00000050965.14) protein_coding-promoter-TSS (ENSMUSG00000050965.14) -14190 ENSMUSG00000086078.1 ENSMUSG00000086078 ENSMUST00000137175 Gm11657 antisense Interval_138737 chr6 91528360 91528610 + 0 NA intron (ENSMUSG00000108584.1, intron 2 of 3) sense_overlapping-intron (ENSMUSG00000108584.1, intron 2 of 3) 6076 ENSMUSG00000108584.1 ENSMUSG00000108584 ENSMUST00000205547 Gm45216 sense_overlapping Interval_167728 chr9 72318105 72318656 + 0 NA intron (ENSMUSG00000038535.17, intron 7 of 9) protein_coding-intron (ENSMUSG00000038535.17, intron 9 of 21) 3249 ENSMUSG00000102225.1 ENSMUSG00000102225 ENSMUST00000193207 Gm37983 TEC Interval_38549 chr12 80062224 80063048 + 0 NA intron (ENSMUSG00000111933.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000111933.1, intron 1 of 1) 18798 ENSMUSG00000111933.1 ENSMUSG00000111933 ENSMUST00000218323 Gm36660 lincRNA Interval_111905 chr4 32426442 32427374 + 0 NA intron (ENSMUSG00000040270.16, intron 1 of 4) protein_coding-intron (ENSMUSG00000040270.16, intron 3 of 7) 9473 ENSMUSG00000040270.16 ENSMUSG00000040270 ENSMUST00000125263 Bach2 protein_coding Interval_173257 chrX 75513943 75514906 + 0 NA exon (ENSMUSG00000031197.11, exon 1 of 6) protein_coding-exon (ENSMUSG00000031197.11, exon 1 of 6) 107 ENSMUSG00000031197.11 ENSMUSG00000031197 ENSMUST00000123419 Vbp1 protein_coding Interval_7498 chr1 131849493 131850399 + 0 NA Intergenic Intergenic 7106 ENSMUSG00000013275.9 ENSMUSG00000013275 ENSMUST00000146360 Slc41a1 protein_coding Interval_25419 chr11 48063334 48063562 + 0 NA Intergenic Intergenic -150903 ENSMUSG00000065804.1 ENSMUSG00000065804 ENSMUST00000083870 Gm23039 snRNA Interval_126276 chr5 85939629 85939981 + 0 NA Intergenic Intergenic 65812 ENSMUSG00000106225.1 ENSMUSG00000106225 ENSMUST00000196185 Gm43564 processed_pseudogene Interval_9432 chr1 157054321 157054784 + 0 NA promoter-TSS (ENSMUSG00000101768.1) lincRNA-promoter-TSS (ENSMUSG00000101768.1) -518 ENSMUSG00000101768.1 ENSMUSG00000101768 ENSMUST00000190681 Gm28694 lincRNA Interval_132152 chr5 142983365 142984402 + 0 NA Intergenic Intergenic 23507 ENSMUSG00000029581.14 ENSMUSG00000029581 ENSMUST00000135293 Fscn1 protein_coding Interval_76453 chr17 80284371 80284605 + 0 NA intron (ENSMUSG00000035051.15, intron 1 of 23) protein_coding-intron (ENSMUSG00000035051.15, intron 1 of 22) -5715 ENSMUSG00000045257.10 ENSMUSG00000045257 ENSMUST00000061703 Morn2 protein_coding Interval_169504 chr9 98563044 98564130 + 0 NA promoter-TSS (ENSMUSG00000032458.6) protein_coding-promoter-TSS (ENSMUSG00000032458.6) 24 ENSMUSG00000051074.4 ENSMUSG00000051074 ENSMUST00000058992 4930579K19Rik processed_transcript Interval_78115 chr18 8450695 8451057 + 0 NA Intergenic Intergenic 35747 ENSMUSG00000117484.1 ENSMUSG00000117484 ENSMUST00000234117 Gm5500 processed_pseudogene Interval_2482 chr1 39679016 39679281 + 0 NA intron (ENSMUSG00000057173.8, intron 11 of 14) protein_coding-intron (ENSMUSG00000057173.8, intron 11 of 14) -27674 ENSMUSG00000050967.5 ENSMUSG00000050967 ENSMUST00000053355 Creg2 protein_coding Interval_132213 chr5 143375158 143376364 + 0 NA TTS (ENSMUSG00000010825.17) protein_coding-TTS (ENSMUSG00000010825.17) 2787 ENSMUSG00000010825.17 ENSMUSG00000010825 ENSMUST00000138948 Grid2ip protein_coding Interval_133251 chr5 150877141 150877558 + 0 NA intron (ENSMUSG00000107047.1, intron 1 of 3) lincRNA-intron (ENSMUSG00000107047.1, intron 1 of 3) 5293 ENSMUSG00000107047.1 ENSMUSG00000107047 ENSMUST00000200887 Gm43298 lincRNA Interval_52624 chr14 48091588 48092251 + 0 NA Intergenic Intergenic -12167 ENSMUSG00000062081.6 ENSMUSG00000062081 ENSMUST00000180532 Gm6055 processed_pseudogene Interval_67793 chr16 57242762 57244189 + 0 NA Intergenic Intergenic 22330 ENSMUSG00000116675.1 ENSMUSG00000116675 ENSMUST00000231600 Gm49581 processed_pseudogene Interval_158801 chr8 86745047 86746787 + 0 NA promoter-TSS (ENSMUSG00000036840.5) protein_coding-promoter-TSS (ENSMUSG00000036840.5) 17 ENSMUSG00000036840.5 ENSMUSG00000036840 ENSMUST00000045296 Siah1a protein_coding Interval_107174 chr3 104321837 104322250 + 0 NA Intergenic Intergenic 44570 ENSMUSG00000022187.2 ENSMUSG00000022187 ENSMUST00000056145 Gm5546 lincRNA Interval_141067 chr6 124781923 124782904 + 0 NA Intergenic Intergenic -2709 ENSMUSG00000030125.11 ENSMUSG00000030125 ENSMUST00000147669 Lrrc23 protein_coding Interval_132504 chr5 145609231 145609721 + 0 NA Intergenic Intergenic -13516 ENSMUSG00000106033.1 ENSMUSG00000106033 ENSMUST00000198553 Gm43381 processed_pseudogene Interval_139776 chr6 108605790 108606410 + 0 NA intron (ENSMUSG00000087341.4, intron 3 of 6) antisense-intron (ENSMUSG00000087341.4, intron 3 of 6) 7895 ENSMUSG00000087341.4 ENSMUSG00000087341 ENSMUST00000204759 0610040F04Rik antisense Interval_152914 chr7 139699583 139700057 + 0 NA Intergenic Intergenic -19579 ENSMUSG00000056777.5 ENSMUSG00000056777 ENSMUST00000072532 Rpl21-ps13 processed_pseudogene Interval_59808 chr15 59435768 59436320 + 0 NA intron (ENSMUSG00000059586.10, intron 3 of 7) protein_coding-intron (ENSMUSG00000059586.10, intron 3 of 6) 61759 ENSMUSG00000059586.10 ENSMUSG00000059586 ENSMUST00000079703 Nsmce2 protein_coding Interval_132022 chr5 142340279 142341600 + 0 NA Intergenic Intergenic 57833 ENSMUSG00000097947.1 ENSMUSG00000097947 ENSMUST00000182990 Gm26970 processed_pseudogene Interval_149469 chr7 98846108 98847830 + 0 NA promoter-TSS (ENSMUSG00000015957.12) protein_coding-promoter-TSS (ENSMUSG00000015957.12) -837 ENSMUSG00000015957.12 ENSMUSG00000015957 ENSMUST00000208062 Wnt11 protein_coding Interval_158190 chr8 79660164 79660436 + 0 NA promoter-TSS (ENSMUSG00000036990.13) protein_coding-promoter-TSS (ENSMUSG00000036990.13) -784 ENSMUSG00000036990.13 ENSMUSG00000036990 ENSMUST00000172614 Otud4 protein_coding Interval_2959 chr1 51639033 51639643 + 0 NA Intergenic Intergenic 58562 ENSMUSG00000101741.1 ENSMUSG00000101741 ENSMUST00000186769 Gm28055 lincRNA Interval_14751 chr10 39589822 39590824 + 0 NA intron (ENSMUSG00000086915.7, intron 2 of 2) antisense-intron (ENSMUSG00000086915.7, intron 2 of 2) 23359 ENSMUSG00000086915.7 ENSMUSG00000086915 ENSMUST00000143877 Gm16364 antisense Interval_31156 chr11 98497392 98498247 + 0 NA intron (ENSMUSG00000018168.8, intron 3 of 7) protein_coding-intron (ENSMUSG00000018168.8, intron 3 of 7) -20416 ENSMUSG00000018168.8 ENSMUSG00000018168 ENSMUST00000152400 Ikzf3 protein_coding Interval_27179 chr11 63858950 63859958 + 0 NA Intergenic Intergenic -12636 ENSMUSG00000081455.1 ENSMUSG00000081455 ENSMUST00000118415 Hmgb1-ps3 processed_pseudogene Interval_85378 chr19 25336902 25337528 + 0 NA intron (ENSMUSG00000032702.16, intron 3 of 13) protein_coding-intron (ENSMUSG00000032702.16, intron 3 of 13) 9988 ENSMUSG00000118238.1 ENSMUSG00000118238 ENSMUST00000235913 Gm34432 processed_pseudogene Interval_30070 chr11 88993287 88994293 + 0 NA intron (ENSMUSG00000085152.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000085152.1, intron 1 of 1) 2754 ENSMUSG00000085152.1 ENSMUSG00000085152 ENSMUST00000128078 Gm11496 lincRNA Interval_160817 chr8 112698142 112698858 + 0 NA intron (ENSMUSG00000031772.17, intron 3 of 20) protein_coding-intron (ENSMUSG00000031772.17, intron 3 of 23) -75154 ENSMUSG00000031772.17 ENSMUSG00000031772 ENSMUST00000140753 Cntnap4 protein_coding Interval_173000 chrX 60945636 60946281 + 0 NA Intergenic Intergenic 26756 ENSMUSG00000081323.1 ENSMUSG00000081323 ENSMUST00000118822 Rpl7l1-ps1 processed_pseudogene Interval_109915 chr3 151386373 151386629 + 0 NA Intergenic Intergenic -51395 ENSMUSG00000039167.12 ENSMUSG00000039167 ENSMUST00000198893 Adgrl4 protein_coding Interval_68973 chr16 89854908 89855240 + 0 NA intron (ENSMUSG00000002489.16, intron 11 of 27) protein_coding-intron (ENSMUSG00000002489.16, intron 11 of 27) -59792 ENSMUSG00000002489.16 ENSMUSG00000002489 ENSMUST00000136760 Tiam1 protein_coding Interval_107399 chr3 107296630 107297628 + 0 NA intron (ENSMUSG00000027896.15, intron 2 of 5) protein_coding-intron (ENSMUSG00000027896.15, intron 2 of 8) 5835 ENSMUSG00000027896.15 ENSMUSG00000027896 ENSMUST00000106723 Slc16a4 protein_coding Interval_38043 chr12 74816221 74816913 + 0 NA Intergenic Intergenic -8778 ENSMUSG00000113845.1 ENSMUSG00000113845 ENSMUST00000223498 Gm39473 lincRNA Interval_144569 chr7 26098408 26099047 + 0 NA TTS (ENSMUSG00000108342.1) processed_pseudogene-TTS (ENSMUSG00000108342.1) 1589 ENSMUSG00000108342.1 ENSMUSG00000108342 ENSMUST00000206876 Gm29920 processed_pseudogene Interval_87010 chr19 45537580 45537931 + 0 NA Intergenic Intergenic 22776 ENSMUSG00000025218.6 ENSMUSG00000025218 ENSMUST00000026239 Poll protein_coding Interval_105745 chr3 89116786 89116987 + 0 NA TTS (ENSMUSG00000105654.1) processed_pseudogene-TTS (ENSMUSG00000105654.1) 162 ENSMUSG00000105654.1 ENSMUSG00000105654 ENSMUST00000196011 Gm29704 processed_pseudogene Interval_124417 chr5 45757652 45757999 + 0 NA TTS (ENSMUSG00000104852.1) TEC-TTS (ENSMUSG00000104852.1) 3865 ENSMUSG00000104852.1 ENSMUSG00000104852 ENSMUST00000195925 Gm43201 TEC Interval_138321 chr6 87203961 87204423 + 0 NA TTS (ENSMUSG00000033420.12) protein_coding-TTS (ENSMUSG00000033420.12) -30183 ENSMUSG00000107436.1 ENSMUSG00000107436 ENSMUST00000204055 Gm44416 TEC Interval_166723 chr9 62265175 62265635 + 0 NA Intergenic Intergenic 16803 ENSMUSG00000046846.4 ENSMUSG00000046846 ENSMUST00000056949 Spesp1 protein_coding Interval_57217 chr15 7885634 7885913 + 0 NA exon (ENSMUSG00000039828.7, exon 1 of 3) protein_coding-exon (ENSMUSG00000039828.7, exon 1 of 3) 74927 ENSMUSG00000022144.4 ENSMUSG00000022144 ENSMUST00000022744 Gdnf protein_coding Interval_54350 chr14 67864271 67866579 + 0 NA intron (ENSMUSG00000044447.5, intron 3 of 17) protein_coding-intron (ENSMUSG00000044447.5, intron 3 of 51) -5680 ENSMUSG00000098866.1 ENSMUSG00000098866 ENSMUST00000183732 Mir6539 miRNA Interval_140481 chr6 118638048 118638381 + 0 NA intron (ENSMUSG00000051331.16, intron 27 of 44) protein_coding-intron (ENSMUSG00000051331.16, intron 30 of 46) -18990 ENSMUSG00000100867.1 ENSMUSG00000100867 ENSMUST00000185373 Gm18981 processed_pseudogene Interval_57595 chr15 12675473 12677617 + 0 NA intron (ENSMUSG00000022197.16, intron 2 of 4) protein_coding-intron (ENSMUSG00000022197.16, intron 2 of 4) -18579 ENSMUSG00000095842.1 ENSMUSG00000095842 ENSMUST00000178350 Gm24302 miRNA Interval_110586 chr4 4242161 4243406 + 0 NA Intergenic Intergenic -103964 ENSMUSG00000045573.9 ENSMUSG00000045573 ENSMUST00000133567 Penk protein_coding Interval_39897 chr12 99433136 99434142 + 0 NA intron (ENSMUSG00000033713.12, intron 3 of 3) protein_coding-intron (ENSMUSG00000033713.12, intron 1 of 5) -56391 ENSMUSG00000113610.1 ENSMUSG00000113610 ENSMUST00000223488 Gm47132 TEC Interval_172759 chrX 48383739 48384056 + 0 NA intron (ENSMUSG00000036959.15, intron 8 of 14) protein_coding-intron (ENSMUSG00000036959.15, intron 7 of 13) 41836 ENSMUSG00000036959.15 ENSMUSG00000036959 ENSMUST00000142160 Bcorl1 protein_coding Interval_96849 chr2 128890813 128893161 + 0 NA intron (ENSMUSG00000027386.9, intron 5 of 8) protein_coding-intron (ENSMUSG00000027386.9, intron 4 of 7) 29006 ENSMUSG00000027386.9 ENSMUSG00000027386 ENSMUST00000028864 Fbln7 protein_coding Interval_169908 chr9 102878570 102878775 + 0 NA intron (ENSMUSG00000032547.12, intron 5 of 13) protein_coding-intron (ENSMUSG00000032547.12, intron 6 of 14) -19883 ENSMUSG00000032547.12 ENSMUSG00000032547 ENSMUST00000177274 Ryk protein_coding Interval_48189 chr13 97077617 97078132 + 0 NA intron (ENSMUSG00000041817.14, intron 1 of 12) protein_coding-intron (ENSMUSG00000041817.14, intron 1 of 12) 10588 ENSMUSG00000041817.14 ENSMUSG00000041817 ENSMUST00000042517 Fam169a protein_coding Interval_120168 chr4 143161648 143162701 + 0 NA TTS (ENSMUSG00000057637.13) protein_coding-TTS (ENSMUSG00000057637.13) -4429 ENSMUSG00000083826.1 ENSMUSG00000083826 ENSMUST00000118638 Gm13039 processed_pseudogene Interval_100711 chr2 171878825 171880082 + 0 NA Intergenic Intergenic 82678 ENSMUSG00000086823.7 ENSMUSG00000086823 ENSMUST00000125465 1700028P15Rik processed_transcript Interval_106167 chr3 94275633 94276705 + 0 NA promoter-TSS (ENSMUSG00000089891.1) unprocessed_pseudogene-promoter-TSS (ENSMUSG00000089891.1) -745 ENSMUSG00000089891.1 ENSMUSG00000089891 ENSMUST00000163001 Gm16561 unprocessed_pseudogene Interval_77963 chr18 6187482 6187947 + 0 NA Intergenic Intergenic -26199 ENSMUSG00000091165.1 ENSMUSG00000091165 ENSMUST00000168187 Gm17036 antisense Interval_65401 chr16 22149219 22150410 + 0 NA intron (ENSMUSG00000033581.17, intron 2 of 14) protein_coding-intron (ENSMUSG00000033581.17, intron 2 of 15) -28578 ENSMUSG00000033581.17 ENSMUSG00000033581 ENSMUST00000127696 Igf2bp2 protein_coding Interval_40172 chr12 102272688 102272927 + 0 NA Intergenic Intergenic -10361 ENSMUSG00000044456.16 ENSMUSG00000044456 ENSMUST00000139686 Rin3 protein_coding Interval_135653 chr6 42349078 42350948 + 0 NA promoter-TSS (ENSMUSG00000029860.16) protein_coding-promoter-TSS (ENSMUSG00000029860.16) 849 ENSMUSG00000108033.1 ENSMUSG00000108033 ENSMUST00000203836 Gm44284 antisense Interval_53109 chr14 54507302 54507652 + 0 NA exon (ENSMUSG00000023110.12, exon 17 of 17) protein_coding-exon (ENSMUSG00000023110.12, exon 17 of 17) 9916 ENSMUSG00000023110.12 ENSMUSG00000023110 ENSMUST00000132801 Prmt5 protein_coding Interval_38353 chr12 77667197 77668149 + 0 NA Intergenic Intergenic -15388 ENSMUSG00000111903.1 ENSMUSG00000111903 ENSMUST00000219952 4930458K08Rik lincRNA Interval_116355 chr4 110134646 110134848 + 0 NA Intergenic Intergenic 152780 ENSMUSG00000028546.17 ENSMUSG00000028546 ENSMUST00000142722 Elavl4 protein_coding Interval_103487 chr3 44297528 44298777 + 0 NA Intergenic Intergenic 195751 ENSMUSG00000104013.1 ENSMUSG00000104013 ENSMUST00000193109 Gm37365 processed_pseudogene Interval_165968 chr9 55048342 55049010 + 0 NA exon (ENSMUSG00000035200.7, exon 1 of 6) protein_coding-exon (ENSMUSG00000035200.7, exon 1 of 6) 103 ENSMUSG00000035200.7 ENSMUSG00000035200 ENSMUST00000034854 Chrnb4 protein_coding Interval_97170 chr2 131984762 131985103 + 0 NA Intergenic Intergenic 34070 ENSMUSG00000027338.16 ENSMUSG00000027338 ENSMUST00000110169 Prnd protein_coding Interval_66890 chr16 38365326 38365567 + 0 NA intron (ENSMUSG00000022803.12, intron 1 of 3) protein_coding-intron (ENSMUSG00000022803.12, intron 1 of 3) -6552 ENSMUSG00000022803.12 ENSMUSG00000022803 ENSMUST00000146342 Popdc2 protein_coding Interval_41983 chr13 5870088 5871172 + 0 NA TTS (ENSMUSG00000000078.7) protein_coding-TTS (ENSMUSG00000000078.7) 9089 ENSMUSG00000000078.7 ENSMUSG00000000078 ENSMUST00000221734 Klf6 protein_coding Interval_137189 chr6 69428754 69429965 + 0 NA Intergenic Intergenic 9398 ENSMUSG00000094006.2 ENSMUSG00000094006 ENSMUST00000103354 Igkv4-59 IG_V_gene Interval_111274 chr4 16630545 16632183 + 0 NA Intergenic Intergenic -44559 ENSMUSG00000096423.1 ENSMUSG00000096423 ENSMUST00000179782 Gm24978 snRNA Interval_71867 chr17 26618496 26618816 + 0 NA intron (ENSMUSG00000001576.15, intron 3 of 11) protein_coding-intron (ENSMUSG00000001576.15, intron 4 of 8) 6444 ENSMUSG00000091078.1 ENSMUSG00000091078 ENSMUST00000165911 Gm17218 antisense Interval_153630 chr8 4117737 4117936 + 0 NA Intergenic Intergenic -2071 ENSMUSG00000084639.1 ENSMUSG00000084639 ENSMUST00000122690 Gm23888 misc_RNA Interval_53199 chr14 55077004 55080225 + 0 NA exon (ENSMUSG00000040721.9, exon 1 of 1) antisense-intron (ENSMUSG00000100162.2, intron 6 of 6) 13428 ENSMUSG00000040721.9 ENSMUSG00000040721 ENSMUST00000188534 Zfhx2 protein_coding Interval_166705 chr9 62165246 62165457 + 0 NA Intergenic Intergenic -42757 ENSMUSG00000092696.1 ENSMUSG00000092696 ENSMUST00000174955 Mir5133 miRNA Interval_18978 chr10 93534319 93535006 + 0 NA exon (ENSMUSG00000015890.2, exon 4 of 9) protein_coding-exon (ENSMUSG00000015890.2, exon 4 of 9) 5371 ENSMUSG00000015890.2 ENSMUSG00000015890 ENSMUST00000016034 Amdhd1 protein_coding Interval_148669 chr7 83982284 83983188 + 0 NA intron (ENSMUSG00000052353.13, intron 10 of 23) protein_coding-intron (ENSMUSG00000052353.13, intron 10 of 28) 87683 ENSMUSG00000038503.15 ENSMUSG00000038503 ENSMUST00000207373 Mesd protein_coding Interval_32437 chr11 107535287 107535508 + 0 NA intron (ENSMUSG00000059706.4, intron 1 of 1) processed_transcript-intron (ENSMUSG00000059706.4, intron 1 of 1) -3092 ENSMUSG00000083996.1 ENSMUSG00000083996 ENSMUST00000118214 Gm11649 transcribed_processed_pseudogene Interval_75662 chr17 70261731 70262046 + 0 NA intron (ENSMUSG00000003279.17, intron 3 of 8) protein_coding-intron (ENSMUSG00000003279.17, intron 3 of 14) -336057 ENSMUSG00000117078.1 ENSMUSG00000117078 ENSMUST00000232868 Gm4561 processed_pseudogene Interval_122252 chr5 20689696 20690175 + 0 NA intron (ENSMUSG00000040003.18, intron 5 of 5) protein_coding-intron (ENSMUSG00000040003.18, intron 22 of 22) -12342 ENSMUSG00000073174.6 ENSMUSG00000073174 ENSMUST00000189302 Gm29254 3prime_overlapping_ncRNA Interval_50409 chr14 12577611 12577875 + 0 NA intron (ENSMUSG00000054423.14, intron 6 of 28) protein_coding-intron (ENSMUSG00000054423.14, intron 6 of 28) -40925 ENSMUSG00000114453.1 ENSMUSG00000114453 ENSMUST00000225784 Gm17805 processed_pseudogene Interval_128490 chr5 113620046 113621724 + 0 NA intron (ENSMUSG00000042190.12, intron 1 of 2) protein_coding-intron (ENSMUSG00000042190.12, intron 1 of 2) -24078 ENSMUSG00000085713.1 ENSMUSG00000085713 ENSMUST00000141710 Gm15736 antisense Interval_67932 chr16 59657441 59657736 + 0 NA intron (ENSMUSG00000055540.15, intron 16 of 17) protein_coding-intron (ENSMUSG00000055540.15, intron 16 of 17) 18379 ENSMUSG00000116894.1 ENSMUSG00000116894 ENSMUST00000232302 4930547E14Rik processed_transcript Interval_55440 chr14 87315089 87315584 + 0 NA Intergenic Intergenic -30909 ENSMUSG00000088536.1 ENSMUSG00000088536 ENSMUST00000157911 Gm23278 snoRNA Interval_19106 chr10 94612043 94612888 + 0 NA promoter-TSS (ENSMUSG00000086269.2) antisense-promoter-TSS (ENSMUSG00000086269.2) -381 ENSMUSG00000086269.2 ENSMUSG00000086269 ENSMUST00000146744 Tmcc3os antisense Interval_108334 chr3 124275124 124275420 + 0 NA intron (ENSMUSG00000104531.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000104531.1, intron 1 of 2) -16804 ENSMUSG00000090474.3 ENSMUSG00000090474 ENSMUST00000168454 Gm9372 transcribed_processed_pseudogene Interval_104231 chr3 61339201 61339390 + 0 NA Intergenic Intergenic -10102 ENSMUSG00000102667.1 ENSMUSG00000102667 ENSMUST00000192191 Gm19901 processed_pseudogene Interval_103339 chr3 39601392 39601796 + 0 NA Intergenic Intergenic -34465 ENSMUSG00000106786.1 ENSMUSG00000106786 ENSMUST00000201317 Gm42781 TEC Interval_133850 chr6 13380481 13381216 + 0 NA Intergenic Intergenic -32489 ENSMUSG00000101894.1 ENSMUSG00000101894 ENSMUST00000186770 1700016P04Rik lincRNA Interval_46401 chr13 64612483 64613102 + 0 NA intron (ENSMUSG00000113850.1, intron 1 of 2) transcribed_processed_pseudogene-intron (ENSMUSG00000113850.1, intron 1 of 2) 932 ENSMUSG00000113850.1 ENSMUSG00000113850 ENSMUST00000222525 Gm47191 transcribed_processed_pseudogene Interval_74096 chr17 46562698 46563045 + 0 NA Intergenic Intergenic -8982 ENSMUSG00000106514.1 ENSMUSG00000106514 ENSMUST00000199897 Mir6976 miRNA Interval_21492 chr10 128900360 128901774 + 0 NA promoter-TSS (ENSMUSG00000025351.14) protein_coding-promoter-TSS (ENSMUSG00000025351.14) -8278 ENSMUSG00000025351.14 ENSMUSG00000025351 ENSMUST00000218450 Cd63 protein_coding Interval_125215 chr5 65407740 65408944 + 0 NA intron (ENSMUSG00000029199.11, intron 10 of 10) protein_coding-intron (ENSMUSG00000029199.11, intron 10 of 10) 2591 ENSMUSG00000106291.1 ENSMUSG00000106291 ENSMUST00000199441 1110003F10Rik TEC Interval_162609 chr9 6351609 6352005 + 0 NA intron (ENSMUSG00000032006.15, intron 5 of 5) protein_coding-intron (ENSMUSG00000032006.15, intron 5 of 6) -81961 ENSMUSG00000047619.5 ENSMUSG00000047619 ENSMUST00000051706 Ddi1 protein_coding Interval_119660 chr4 139059579 139060406 + 0 NA TTS (ENSMUSG00000041143.16) protein_coding-TTS (ENSMUSG00000041143.16) 15578 ENSMUSG00000028747.10 ENSMUSG00000028747 ENSMUST00000068036 Htr6 protein_coding Interval_145053 chr7 29766865 29767315 + 0 NA Intergenic Intergenic -1462 ENSMUSG00000046185.10 ENSMUSG00000046185 ENSMUST00000032802 Zfp84 protein_coding Interval_102506 chr3 27283090 27283676 + 0 NA intron (ENSMUSG00000027698.14, intron 4 of 4) protein_coding-intron (ENSMUSG00000027698.14, intron 4 of 4) 5323 ENSMUSG00000102186.1 ENSMUSG00000102186 ENSMUST00000193346 Gm37191 processed_pseudogene Interval_118190 chr4 129433053 129433260 + 0 NA promoter-TSS (ENSMUSG00000048485.12) protein_coding-promoter-TSS (ENSMUSG00000048485.12) -627 ENSMUSG00000048485.12 ENSMUSG00000048485 ENSMUST00000124364 Zbtb8b protein_coding Interval_139204 chr6 97178372 97179869 + 0 NA promoter-TSS (ENSMUSG00000030059.15) protein_coding-promoter-TSS (ENSMUSG00000030059.15) -10309 ENSMUSG00000030059.15 ENSMUSG00000030059 ENSMUST00000204190 Tmf1 protein_coding Interval_92685 chr2 62627950 62628365 + 0 NA intron (ENSMUSG00000026896.14, intron 2 of 14) protein_coding-intron (ENSMUSG00000026896.14, intron 3 of 15) 18098 ENSMUSG00000026896.14 ENSMUSG00000026896 ENSMUST00000175964 Ifih1 protein_coding Interval_90467 chr2 30643944 30644468 + 0 NA intron (ENSMUSG00000086405.1, intron 2 of 3) lincRNA-intron (ENSMUSG00000086405.1, intron 2 of 3) 14551 ENSMUSG00000086405.1 ENSMUSG00000086405 ENSMUST00000146702 9330198N18Rik lincRNA Interval_20523 chr10 118455554 118455813 + 0 NA Intergenic Intergenic 14264 ENSMUSG00000111913.1 ENSMUSG00000111913 ENSMUST00000219775 Gm49751 TEC Interval_93668 chr2 75697439 75699207 + 0 NA intron (ENSMUSG00000015839.6, intron 1 of 1) protein_coding-intron (ENSMUSG00000015839.6, intron 1 of 4) 6166 ENSMUSG00000015839.6 ENSMUSG00000015839 ENSMUST00000152371 Nfe2l2 protein_coding Interval_148922 chr7 90099566 90100408 + 0 NA Intergenic Intergenic 7981 ENSMUSG00000062235.6 ENSMUSG00000062235 ENSMUST00000058881 Gm5341 processed_pseudogene Interval_149256 chr7 96742429 96742936 + 0 NA intron (ENSMUSG00000048078.16, intron 11 of 32) protein_coding-intron (ENSMUSG00000048078.16, intron 13 of 32) -53959 ENSMUSG00000048078.16 ENSMUSG00000048078 ENSMUST00000147659 Tenm4 protein_coding Interval_32651 chr11 109425316 109426451 + 0 NA promoter-TSS (ENSMUSG00000020610.17) protein_coding-promoter-TSS (ENSMUSG00000020610.17) -337 ENSMUSG00000020610.17 ENSMUSG00000020610 ENSMUST00000154875 Amz2 protein_coding Interval_109834 chr3 148805794 148806252 + 0 NA Intergenic Intergenic 152963 ENSMUSG00000105934.1 ENSMUSG00000105934 ENSMUST00000196420 Gm43575 processed_pseudogene Interval_41736 chr12 118529282 118530934 + 0 NA promoter-TSS (ENSMUSG00000113875.1) lincRNA-promoter-TSS (ENSMUSG00000113875.1) 85 ENSMUSG00000113875.1 ENSMUSG00000113875 ENSMUST00000222459 D230030E09Rik lincRNA Interval_36501 chr12 46634904 46636303 + 0 NA Intergenic Intergenic 30106 ENSMUSG00000112174.1 ENSMUSG00000112174 ENSMUST00000217951 Gm48535 lincRNA Interval_12710 chr10 4431931 4433569 + 0 NA promoter-TSS (ENSMUSG00000019763.11) protein_coding-promoter-TSS (ENSMUSG00000019763.11) 110 ENSMUSG00000061759.15 ENSMUSG00000061759 ENSMUST00000131636 Armt1 protein_coding Interval_37084 chr12 57549430 57550767 + 0 NA Intergenic Intergenic -3182 ENSMUSG00000035451.7 ENSMUSG00000035451 ENSMUST00000218398 Foxa1 protein_coding Interval_52477 chr14 46821537 46822554 + 0 NA intron (ENSMUSG00000062014.13, intron 1 of 6) protein_coding-intron (ENSMUSG00000062014.13, intron 1 of 6) -5906 ENSMUSG00000062014.13 ENSMUSG00000062014 ENSMUST00000226842 Gmfb protein_coding Interval_12093 chr1 189698505 189698859 + 0 NA Intergenic Intergenic 13354 ENSMUSG00000103374.1 ENSMUSG00000103374 ENSMUST00000193510 Gm37239 processed_pseudogene Interval_163356 chr9 21034856 21035202 + 0 NA intron (ENSMUSG00000097535.1, intron 1 of 1) protein_coding-intron (ENSMUSG00000032174.5, intron 4 of 10) -2672 ENSMUSG00000110790.1 ENSMUSG00000110790 ENSMUST00000216917 Gm47079 antisense Interval_39121 chr12 85227143 85227442 + 0 NA TTS (ENSMUSG00000004788.11) protein_coding-TTS (ENSMUSG00000004788.11) 7746 ENSMUSG00000004788.11 ENSMUSG00000004788 ENSMUST00000130760 Eif2b2 protein_coding Interval_75442 chr17 66567823 66569078 + 0 NA intron (ENSMUSG00000024105.3, intron 2 of 3) protein_coding-intron (ENSMUSG00000024105.3, intron 2 of 3) 26171 ENSMUSG00000024105.3 ENSMUSG00000024105 ENSMUST00000024914 Themis3 protein_coding Interval_19725 chr10 108317521 108317752 + 0 NA Intergenic Intergenic -15181 ENSMUSG00000035873.8 ENSMUSG00000035873 ENSMUST00000218332 Pawr protein_coding Interval_82400 chr18 73710699 73711023 + 0 NA promoter-TSS (ENSMUSG00000117985.1) lincRNA-promoter-TSS (ENSMUSG00000117985.1) -467 ENSMUSG00000117985.1 ENSMUSG00000117985 ENSMUST00000237598 Gm32548 lincRNA Interval_107164 chr3 104101746 104102095 + 0 NA intron (ENSMUSG00000052539.15, intron 2 of 20) protein_coding-intron (ENSMUSG00000052539.15, intron 2 of 21) -4040 ENSMUSG00000105148.1 ENSMUSG00000105148 ENSMUST00000199071 Gm42700 sense_intronic Interval_161888 chr8 123460162 123460415 + 0 NA exon (ENSMUSG00000001482.15, exon 11 of 11) protein_coding-exon (ENSMUSG00000001482.15, exon 11 of 11) -11096 ENSMUSG00000088233.1 ENSMUSG00000088233 ENSMUST00000157608 Gm25428 snoRNA Interval_63192 chr15 99661183 99661672 + 0 NA Intergenic Intergenic -9815 ENSMUSG00000023015.14 ENSMUSG00000023015 ENSMUST00000109581 Racgap1 protein_coding Interval_7366 chr1 130547901 130548191 + 0 NA intron (ENSMUSG00000085526.1, intron 4 of 4) antisense-intron (ENSMUSG00000085526.1, intron 4 of 4) 47630 ENSMUSG00000064395.1 ENSMUSG00000064395 ENSMUST00000082461 Gm23623 snRNA Interval_59421 chr15 52907040 52907700 + 0 NA Intergenic Intergenic -121103 ENSMUSG00000115137.1 ENSMUSG00000115137 ENSMUST00000228167 Gm34794 lincRNA Interval_97992 chr2 146489097 146489656 + 0 NA intron (ENSMUSG00000037110.20, intron 1 of 41) protein_coding-intron (ENSMUSG00000037110.20, intron 1 of 15) 22968 ENSMUSG00000037110.20 ENSMUSG00000037110 ENSMUST00000124709 Ralgapa2 protein_coding Interval_51674 chr14 31272160 31272590 + 0 NA exon (ENSMUSG00000019027.8, exon 54 of 78) protein_coding-exon (ENSMUSG00000019027.8, exon 54 of 78) -2864 ENSMUSG00000019027.8 ENSMUSG00000019027 ENSMUST00000228429 Dnah1 protein_coding Interval_96048 chr2 119435758 119437543 + 0 NA intron (ENSMUSG00000034154.15, intron 1 of 2) protein_coding-intron (ENSMUSG00000034154.15, intron 14 of 35) 3030 ENSMUSG00000034154.15 ENSMUSG00000034154 ENSMUST00000138707 Ino80 protein_coding Interval_127831 chr5 108085271 108086377 + 0 NA intron (ENSMUSG00000029267.17, intron 3 of 14) protein_coding-intron (ENSMUSG00000029267.17, intron 3 of 14) 20107 ENSMUSG00000029267.17 ENSMUSG00000029267 ENSMUST00000129921 Mtf2 protein_coding Interval_157617 chr8 71731793 71732009 + 0 NA Intergenic Intergenic -6197 ENSMUSG00000070000.13 ENSMUSG00000070000 ENSMUST00000125092 Fcho1 protein_coding Interval_118236 chr4 129701431 129702786 + 0 NA Intergenic Intergenic 11712 ENSMUSG00000028790.13 ENSMUSG00000028790 ENSMUST00000139281 Khdrbs1 protein_coding Interval_41273 chr12 112324921 112325352 + 0 NA Intergenic Intergenic 24931 ENSMUSG00000103080.1 ENSMUSG00000103080 ENSMUST00000194990 Gm38123 TEC Interval_9465 chr1 157433091 157434592 + 0 NA Intergenic Intergenic 20863 ENSMUSG00000049881.13 ENSMUSG00000049881 ENSMUST00000189791 2810025M15Rik transcribed_processed_pseudogene Interval_87494 chr19 53037784 53039301 + 0 NA promoter-TSS (ENSMUSG00000025027.18) protein_coding-promoter-TSS (ENSMUSG00000025027.18) -27786 ENSMUSG00000098730.1 ENSMUSG00000098730 ENSMUST00000184510 Mir6407 miRNA Interval_82683 chr18 75901217 75902370 + 0 NA intron (ENSMUSG00000044646.15, intron 2 of 5) protein_coding-intron (ENSMUSG00000044646.15, intron 2 of 4) 81578 ENSMUSG00000044646.15 ENSMUSG00000044646 ENSMUST00000167921 Zbtb7c protein_coding Interval_3254 chr1 55192074 55193634 + 0 NA intron (ENSMUSG00000025978.14, intron 6 of 7) protein_coding-intron (ENSMUSG00000025978.14, intron 7 of 8) -31801 ENSMUSG00000061863.6 ENSMUSG00000061863 ENSMUST00000161440 Gm6822 processed_pseudogene Interval_51815 chr14 32437241 32437756 + 0 NA intron (ENSMUSG00000021919.8, intron 8 of 15) protein_coding-intron (ENSMUSG00000021919.8, intron 8 of 15) 27352 ENSMUSG00000100241.1 ENSMUSG00000100241 ENSMUST00000191501 Slc18a3 protein_coding Interval_48426 chr13 98939876 98940228 + 0 NA intron (ENSMUSG00000114569.1, intron 2 of 2) lincRNA-intron (ENSMUSG00000114569.1, intron 2 of 2) 5864 ENSMUSG00000114569.1 ENSMUSG00000114569 ENSMUST00000223733 Gm35215 lincRNA Interval_92984 chr2 69175278 69175660 + 0 NA intron (ENSMUSG00000034738.8, intron 8 of 15) protein_coding-intron (ENSMUSG00000034738.8, intron 8 of 15) -3836 ENSMUSG00000034738.8 ENSMUSG00000034738 ENSMUST00000141276 Nostrin protein_coding Interval_59868 chr15 60344306 60344599 + 0 NA Intergenic Intergenic -47502 ENSMUSG00000115838.1 ENSMUSG00000115838 ENSMUST00000228640 Gm46507 processed_pseudogene Interval_33570 chr11 117273734 117274161 + 0 NA intron (ENSMUSG00000059248.13, intron 1 of 10) protein_coding-intron (ENSMUSG00000059248.13, intron 1 of 10) -10510 ENSMUSG00000086050.1 ENSMUSG00000086050 ENSMUST00000123882 Gm16045 antisense Interval_17872 chr10 80519081 80519595 + 0 NA TTS (ENSMUSG00000003341.9) protein_coding-TTS (ENSMUSG00000003341.9) 10569 ENSMUSG00000104429.1 ENSMUSG00000104429 ENSMUST00000194078 2610034O05Rik TEC Interval_145522 chr7 35350827 35352413 + 0 NA intron (ENSMUSG00000030494.13, intron 1 of 15) protein_coding-intron (ENSMUSG00000030494.13, intron 1 of 14) -30945 ENSMUSG00000030494.13 ENSMUSG00000030494 ENSMUST00000187997 Rhpn2 protein_coding Interval_143838 chr7 16645474 16645700 + 0 NA Intergenic Intergenic 2202 ENSMUSG00000108610.1 ENSMUSG00000108610 ENSMUST00000206614 Gm29725 processed_pseudogene Interval_147860 chr7 74369845 74370420 + 0 NA intron (ENSMUSG00000025790.14, intron 1 of 1) protein_coding-intron (ENSMUSG00000025790.14, intron 2 of 9) -22566 ENSMUSG00000085161.1 ENSMUSG00000085161 ENSMUST00000132826 Gm7580 antisense Interval_47375 chr13 82335351 82336596 + 0 NA Intergenic Intergenic 43670 ENSMUSG00000114932.1 ENSMUSG00000114932 ENSMUST00000224376 Gm4936 processed_pseudogene Interval_126441 chr5 88591575 88591978 + 0 NA intron (ENSMUSG00000029291.11, intron 1 of 2) protein_coding-intron (ENSMUSG00000029291.11, intron 1 of 12) 37314 ENSMUSG00000070697.4 ENSMUSG00000070697 ENSMUST00000090413 Utp3 protein_coding Interval_127871 chr5 108426777 108428099 + 0 NA intron (ENSMUSG00000029491.7, intron 13 of 17) protein_coding-intron (ENSMUSG00000029491.7, intron 15 of 21) 6959 ENSMUSG00000050856.16 ENSMUSG00000050856 ENSMUST00000123184 Atp5k protein_coding Interval_150130 chr7 107209219 107210695 + 0 NA exon (ENSMUSG00000073894.1, exon 1 of 1) protein_coding-exon (ENSMUSG00000073894.1, exon 1 of 1) 512 ENSMUSG00000073894.1 ENSMUSG00000073894 ENSMUST00000098135 Rbmxl2 protein_coding Interval_115403 chr4 98676532 98676738 + 0 NA intron (ENSMUSG00000061859.17, intron 37 of 44) protein_coding-intron (ENSMUSG00000061859.17, intron 11 of 15) 12269 ENSMUSG00000081046.1 ENSMUSG00000081046 ENSMUST00000120431 Gm12846 processed_pseudogene Interval_168541 chr9 83391617 83392740 + 0 NA intron (ENSMUSG00000032258.15, intron 7 of 7) protein_coding-intron (ENSMUSG00000032258.15, intron 7 of 7) 9691 ENSMUSG00000032258.15 ENSMUSG00000032258 ENSMUST00000188907 Lca5 protein_coding Interval_425 chr1 5146665 5147045 + 0 NA intron (ENSMUSG00000033793.12, intron 11 of 12) protein_coding-intron (ENSMUSG00000033793.12, intron 12 of 13) 63723 ENSMUSG00000033793.12 ENSMUSG00000033793 ENSMUST00000192142 Atp6v1h protein_coding Interval_117005 chr4 118967901 118968276 + 0 NA TTS (ENSMUSG00000024903.10) protein_coding-TTS (ENSMUSG00000024903.10) 2713 ENSMUSG00000024903.10 ENSMUSG00000024903 ENSMUST00000142457 Lao1 protein_coding Interval_7364 chr1 130505827 130505994 + 0 NA intron (ENSMUSG00000085526.1, intron 1 of 4) antisense-intron (ENSMUSG00000085526.1, intron 1 of 4) 32167 ENSMUSG00000103751.1 ENSMUSG00000103751 ENSMUST00000193111 Gm37283 TEC Interval_158902 chr8 87830361 87833688 + 0 NA intron (ENSMUSG00000045333.15, intron 3 of 3) protein_coding-intron (ENSMUSG00000045333.15, intron 2 of 6) 121838 ENSMUSG00000045333.15 ENSMUSG00000045333 ENSMUST00000173092 Zfp423 protein_coding Interval_31508 chr11 101081952 101083189 + 0 NA promoter-TSS (ENSMUSG00000001755.12) protein_coding-promoter-TSS (ENSMUSG00000001755.12) -1325 ENSMUSG00000001755.12 ENSMUSG00000001755 ENSMUST00000151686 Coasy protein_coding Interval_88165 chr19 60165371 60165861 + 0 NA Intergenic Intergenic 14089 ENSMUSG00000053117.11 ENSMUSG00000053117 ENSMUST00000235893 E330013P04Rik lincRNA Interval_2832 chr1 46066312 46067750 + 0 NA exon (ENSMUSG00000041144.12, exon 2 of 2) protein_coding-exon (ENSMUSG00000041144.12, exon 2 of 2) 178 ENSMUSG00000041144.12 ENSMUSG00000041144 ENSMUST00000185879 Dnah7b protein_coding Interval_78297 chr18 11793536 11793723 + 0 NA Intergenic Intergenic -41074 ENSMUSG00000117589.1 ENSMUSG00000117589 ENSMUST00000234203 Gm18713 processed_pseudogene Interval_142948 chr6 147219093 147219735 + 0 NA Intergenic Intergenic 24387 ENSMUSG00000086021.1 ENSMUSG00000086021 ENSMUST00000153521 Gm15767 lincRNA Interval_147753 chr7 73378633 73378865 + 0 NA intron (ENSMUSG00000070509.15, intron 1 of 2) protein_coding-intron (ENSMUSG00000070509.15, intron 1 of 3) -2975 ENSMUSG00000097756.2 ENSMUSG00000097756 ENSMUST00000206959 A730056A06Rik antisense Interval_16957 chr10 70137854 70139680 + 0 NA intron (ENSMUSG00000048701.13, intron 1 of 8) protein_coding-intron (ENSMUSG00000048701.13, intron 1 of 8) -36244 ENSMUSG00000048701.13 ENSMUSG00000048701 ENSMUST00000135607 Ccdc6 protein_coding Interval_93199 chr2 71108899 71109363 + 0 NA Intergenic Intergenic -8792 ENSMUSG00000027015.4 ENSMUSG00000027015 ENSMUST00000028403 Cybrd1 protein_coding Interval_162729 chr9 8099944 8100168 + 0 NA promoter-TSS (ENSMUSG00000040729.8) protein_coding-promoter-TSS (ENSMUSG00000040729.8) 34238 ENSMUSG00000040729.8 ENSMUSG00000040729 ENSMUST00000214150 Cep126 protein_coding Interval_156272 chr8 46739189 46741937 + 0 NA intron (ENSMUSG00000031627.9, intron 1 of 3) protein_coding-intron (ENSMUSG00000031627.9, intron 1 of 8) -1055 ENSMUSG00000097534.3 ENSMUSG00000097534 ENSMUST00000181167 Gm16675 bidirectional_promoter_lncRNA Interval_40951 chr12 110202920 110203368 + 0 NA Intergenic Intergenic -15083 ENSMUSG00000113733.1 ENSMUSG00000113733 ENSMUST00000222571 Gm34785 lincRNA Interval_91500 chr2 39565273 39565568 + 0 NA Intergenic Intergenic -6687 ENSMUSG00000084285.1 ENSMUSG00000084285 ENSMUST00000117649 Gm13451 processed_pseudogene Interval_123176 chr5 30383230 30383559 + 0 NA exon (ENSMUSG00000062372.13, exon 22 of 46) protein_coding-exon (ENSMUSG00000062372.13, exon 22 of 46) 17348 ENSMUSG00000106311.1 ENSMUSG00000106311 ENSMUST00000200001 Gm43755 sense_intronic Interval_87746 chr19 55593662 55593889 + 0 NA intron (ENSMUSG00000024983.10, intron 8 of 8) protein_coding-intron (ENSMUSG00000024983.10, intron 7 of 7) -148489 ENSMUSG00000024985.20 ENSMUSG00000024985 ENSMUST00000148666 Tcf7l2 protein_coding Interval_121840 chr5 8734426 8734610 + 0 NA exon (ENSMUSG00000104535.1, exon 1 of 1) TEC-exon (ENSMUSG00000104535.1, exon 1 of 1) 1250 ENSMUSG00000104535.1 ENSMUSG00000104535 ENSMUST00000199172 Gm42686 TEC Interval_133064 chr5 149596082 149597909 + 0 NA intron (ENSMUSG00000029658.17, intron 19 of 22) protein_coding-intron (ENSMUSG00000029658.17, intron 19 of 22) 39343 ENSMUSG00000029657.15 ENSMUSG00000029657 ENSMUST00000201666 Hsph1 protein_coding Interval_126560 chr5 90261977 90262960 + 0 NA exon (ENSMUSG00000055204.15, exon 1 of 1) protein_coding-exon (ENSMUSG00000055204.15, exon 1 of 1) -46446 ENSMUSG00000035505.14 ENSMUSG00000035505 ENSMUST00000148480 Cox18 protein_coding Interval_154280 chr8 13992102 13993766 + 0 NA intron (ENSMUSG00000110058.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000110058.1, intron 1 of 2) -6006 ENSMUSG00000110058.1 ENSMUSG00000110058 ENSMUST00000210969 Gm5907 lincRNA Interval_19035 chr10 93965797 93966149 + 0 NA exon (ENSMUSG00000036099.16, exon 12 of 12) protein_coding-exon (ENSMUSG00000036099.16, exon 12 of 12) -2110 ENSMUSG00000065607.1 ENSMUSG00000065607 ENSMUST00000083673 Mir331 miRNA Interval_94287 chr2 87500416 87504011 + 0 NA Intergenic Intergenic -5120 ENSMUSG00000025839.3 ENSMUSG00000025839 ENSMUST00000141790 Pramel7 protein_coding Interval_108047 chr3 121045962 121046386 + 0 NA Intergenic Intergenic -16392 ENSMUSG00000104749.1 ENSMUSG00000104749 ENSMUST00000200496 Gm42926 TEC Interval_86414 chr19 40326975 40327193 + 0 NA intron (ENSMUSG00000025006.18, intron 17 of 26) protein_coding-intron (ENSMUSG00000025006.18, intron 13 of 21) 29113 ENSMUSG00000114796.1 ENSMUSG00000114796 ENSMUST00000225358 A930028N01Rik antisense Interval_146294 chr7 45174813 45175270 + 0 NA TTS (ENSMUSG00000070570.5) protein_coding-TTS (ENSMUSG00000070570.5) 1738 ENSMUSG00000106470.1 ENSMUSG00000106470 ENSMUST00000197423 Mir7055 miRNA Interval_62226 chr15 88954298 88955264 + 0 NA promoter-TSS (ENSMUSG00000022388.14) protein_coding-promoter-TSS (ENSMUSG00000022388.14) -722 ENSMUSG00000022388.14 ENSMUSG00000022388 ENSMUST00000137740 Ttll8 protein_coding Interval_28271 chr11 74808486 74808799 + 0 NA exon (ENSMUSG00000010554.14, exon 1 of 3) protein_coding-exon (ENSMUSG00000010554.14, exon 1 of 3) 5318 ENSMUSG00000010554.14 ENSMUSG00000010554 ENSMUST00000134571 Mettl16 protein_coding Interval_85748 chr19 30294587 30295717 + 0 NA Intergenic Intergenic 30272 ENSMUSG00000089016.1 ENSMUSG00000089016 ENSMUST00000158391 Gm24883 misc_RNA Interval_55306 chr14 82035515 82035742 + 0 NA Intergenic Intergenic -85803 ENSMUSG00000115731.1 ENSMUSG00000115731 ENSMUST00000226942 Gm19050 processed_pseudogene Interval_48933 chr13 105067289 105067638 + 0 NA Intergenic Intergenic -12533 ENSMUSG00000021719.9 ENSMUSG00000021719 ENSMUST00000063551 Rgs7bp protein_coding Interval_134041 chr6 17947523 17947821 + 0 NA Intergenic Intergenic 32676 ENSMUSG00000106858.1 ENSMUSG00000106858 ENSMUST00000202926 Gm43844 TEC Interval_103876 chr3 54128360 54129513 + 0 NA Intergenic Intergenic -27679 ENSMUSG00000027748.11 ENSMUSG00000027748 ENSMUST00000200341 Trpc4 protein_coding Interval_6282 chr1 105318669 105319572 + 0 NA intron (ENSMUSG00000047496.6, intron 1 of 1) protein_coding-intron (ENSMUSG00000047496.6, intron 2 of 2) -2001 ENSMUSG00000099582.1 ENSMUSG00000099582 ENSMUST00000191422 Gm29014 processed_pseudogene Interval_58594 chr15 36458509 36459466 + 0 NA Intergenic Intergenic -22296 ENSMUSG00000115395.1 ENSMUSG00000115395 ENSMUST00000227487 Gm49224 lincRNA Interval_170409 chr9 107727171 107727662 + 0 NA Intergenic Intergenic 33147 ENSMUSG00000032580.12 ENSMUSG00000032580 ENSMUST00000181993 Rbm5 protein_coding Interval_90109 chr2 28145721 28145981 + 0 NA Intergenic Intergenic -47141 ENSMUSG00000026833.18 ENSMUSG00000026833 ENSMUST00000028177 Olfm1 protein_coding Interval_72228 chr17 28701523 28702090 + 0 NA intron (ENSMUSG00000053436.15, intron 2 of 12) protein_coding-intron (ENSMUSG00000053436.15, intron 1 of 11) 10361 ENSMUSG00000053436.15 ENSMUSG00000053436 ENSMUST00000151613 Mapk14 protein_coding Interval_117773 chr4 126156568 126157825 + 0 NA intron (ENSMUSG00000073758.10, intron 6 of 11) protein_coding-intron (ENSMUSG00000073758.10, intron 6 of 11) 5405 ENSMUSG00000073758.10 ENSMUSG00000073758 ENSMUST00000141638 Sh3d21 protein_coding Interval_20740 chr10 120671874 120672125 + 0 NA intron (ENSMUSG00000112716.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000112716.1, intron 1 of 2) -4982 ENSMUSG00000103213.1 ENSMUSG00000103213 ENSMUST00000194273 Gm38289 TEC Interval_83286 chr18 83524179 83525875 + 0 NA intron (ENSMUSG00000118175.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000118175.1, intron 1 of 2) 277 ENSMUSG00000118175.1 ENSMUSG00000118175 ENSMUST00000237450 Gm50416 lincRNA Interval_42607 chr13 16694217 16694740 + 0 NA Intergenic Intergenic -54988 ENSMUSG00000113862.1 ENSMUSG00000113862 ENSMUST00000221660 Gm7537 processed_pseudogene Interval_83176 chr18 82558970 82561196 + 0 NA intron (ENSMUSG00000041607.17, intron 1 of 5) protein_coding-intron (ENSMUSG00000041607.17, intron 4 of 6) 5537 ENSMUSG00000041607.17 ENSMUSG00000041607 ENSMUST00000150952 Mbp protein_coding Interval_141486 chr6 128559178 128559354 + 0 NA exon (ENSMUSG00000047228.9, exon 1 of 2) protein_coding-exon (ENSMUSG00000047228.9, exon 1 of 2) -5988 ENSMUSG00000047228.9 ENSMUSG00000047228 ENSMUST00000203129 A2ml1 protein_coding Interval_156091 chr8 44180353 44180626 + 0 NA Intergenic Intergenic 48056 ENSMUSG00000102378.1 ENSMUSG00000102378 ENSMUST00000193497 Gm37972 TEC Interval_71895 chr17 26849692 26851885 + 0 NA Intergenic Intergenic -5779 ENSMUSG00000015579.5 ENSMUSG00000015579 ENSMUST00000235454 Nkx2-5 protein_coding Interval_169751 chr9 100957317 100958219 + 0 NA TTS (ENSMUSG00000037286.15) protein_coding-TTS (ENSMUSG00000037286.15) 1999 ENSMUSG00000037286.15 ENSMUSG00000037286 ENSMUST00000191345 Stag1 protein_coding Interval_138481 chr6 88552214 88552428 + 0 NA intron (ENSMUSG00000033182.12, intron 4 of 4) protein_coding-intron (ENSMUSG00000033182.12, intron 5 of 5) 33308 ENSMUSG00000107698.1 ENSMUSG00000107698 ENSMUST00000203376 Gm44430 TEC Interval_10555 chr1 171803311 171803670 + 0 NA Intergenic Intergenic -36207 ENSMUSG00000038147.13 ENSMUSG00000038147 ENSMUST00000042302 Cd84 protein_coding Interval_38379 chr12 78165897 78167932 + 0 NA Intergenic Intergenic 1368 ENSMUSG00000088039.1 ENSMUSG00000088039 ENSMUST00000157414 Gm24994 snoRNA Interval_66456 chr16 33979505 33980370 + 0 NA intron (ENSMUSG00000061751.16, intron 25 of 26) protein_coding-intron (ENSMUSG00000061751.16, intron 58 of 59) -12934 ENSMUSG00000022814.6 ENSMUSG00000022814 ENSMUST00000131990 Umps protein_coding Interval_133028 chr5 149380266 149383041 + 0 NA intron (ENSMUSG00000107271.3, intron 1 of 2) lincRNA-intron (ENSMUSG00000107271.3, intron 3 of 3) 12605 ENSMUSG00000107271.3 ENSMUSG00000107271 ENSMUST00000202340 BC028471 lincRNA Interval_36435 chr12 44551797 44552760 + 0 NA intron (ENSMUSG00000020598.16, intron 3 of 4) protein_coding-intron (ENSMUSG00000020598.16, intron 12 of 30) 70384 ENSMUSG00000112823.1 ENSMUSG00000112823 ENSMUST00000217983 Gm6125 processed_pseudogene Interval_98770 chr2 154847380 154847624 + 0 NA exon (ENSMUSG00000027593.15, exon 4 of 4) protein_coding-exon (ENSMUSG00000027593.15, exon 4 of 4) 45280 ENSMUSG00000074656.12 ENSMUSG00000074656 ENSMUST00000135524 Eif2s2 protein_coding Interval_145447 chr7 34806230 34806515 + 0 NA intron (ENSMUSG00000060402.8, intron 1 of 2) protein_coding-intron (ENSMUSG00000060402.8, intron 1 of 3) -52560 ENSMUSG00000060402.8 ENSMUSG00000060402 ENSMUST00000205390 Chst8 protein_coding Interval_141540 chr6 129033409 129033608 + 0 NA Intergenic Intergenic -1832 ENSMUSG00000081935.1 ENSMUSG00000081935 ENSMUST00000120132 Gm16186 unprocessed_pseudogene Interval_162610 chr9 6366559 6367814 + 0 NA intron (ENSMUSG00000032006.15, intron 6 of 6) protein_coding-intron (ENSMUSG00000032006.15, intron 6 of 6) -97340 ENSMUSG00000047619.5 ENSMUSG00000047619 ENSMUST00000051706 Ddi1 protein_coding Interval_35853 chr12 31248852 31249775 + 0 NA Intergenic Intergenic 8543 ENSMUSG00000112187.1 ENSMUSG00000112187 ENSMUST00000219110 Gm6993 protein_coding Interval_25668 chr11 50588866 50589309 + 0 NA Intergenic Intergenic -12997 ENSMUSG00000036545.9 ENSMUSG00000036545 ENSMUST00000127534 Adamts2 protein_coding Interval_124681 chr5 53212773 53215059 + 0 NA promoter-TSS (ENSMUSG00000029189.10) protein_coding-promoter-TSS (ENSMUSG00000029189.10) 11 ENSMUSG00000029189.10 ENSMUSG00000029189 ENSMUST00000199919 Sel1l3 protein_coding Interval_135185 chr6 37354411 37355586 + 0 NA intron (ENSMUSG00000038648.5, intron 6 of 11) protein_coding-intron (ENSMUSG00000038648.5, intron 6 of 11) -18463 ENSMUSG00000038648.5 ENSMUSG00000038648 ENSMUST00000128534 Creb3l2 protein_coding Interval_12418 chr1 193272371 193273746 + 0 NA promoter-TSS (ENSMUSG00000026639.18) protein_coding-promoter-TSS (ENSMUSG00000026639.18) 159 ENSMUSG00000009633.3 ENSMUSG00000009633 ENSMUST00000009777 G0s2 protein_coding Interval_118743 chr4 133485764 133486841 + 0 NA exon (ENSMUSG00000046694.6, exon 2 of 2) protein_coding-exon (ENSMUSG00000046694.6, exon 2 of 2) -3776 ENSMUSG00000086850.1 ENSMUSG00000086850 ENSMUST00000132840 Gm13257 antisense Interval_8196 chr1 136427109 136428117 + 0 NA intron (ENSMUSG00000026404.12, intron 4 of 7) protein_coding-intron (ENSMUSG00000026404.12, intron 4 of 7) -4789 ENSMUSG00000026404.12 ENSMUSG00000026404 ENSMUST00000149783 Ddx59 protein_coding Interval_14395 chr10 32738586 32738802 + 0 NA intron (ENSMUSG00000069670.8, intron 1 of 1) protein_coding-intron (ENSMUSG00000069670.8, intron 1 of 6) -99208 ENSMUSG00000112914.1 ENSMUSG00000112914 ENSMUST00000220196 Gm47702 TEC Interval_40240 chr12 102698274 102698514 + 0 NA intron (ENSMUSG00000096751.3, intron 2 of 2) protein_coding-intron (ENSMUSG00000057963.9, intron 1 of 9) -13374 ENSMUSG00000089324.1 ENSMUSG00000089324 ENSMUST00000158699 Mir1936 miRNA Interval_81863 chr18 65489576 65491438 + 0 NA Intergenic Intergenic -10899 ENSMUSG00000118389.1 ENSMUSG00000118389 ENSMUST00000237946 Gm50246 processed_pseudogene Interval_146524 chr7 46615196 46616014 + 0 NA intron (ENSMUSG00000030839.12, intron 7 of 11) protein_coding-intron (ENSMUSG00000030839.12, intron 7 of 10) 24199 ENSMUSG00000030839.12 ENSMUSG00000030839 ENSMUST00000137988 Sergef protein_coding Interval_40690 chr12 107335147 107335987 + 0 NA Intergenic Intergenic -83574 ENSMUSG00000090607.1 ENSMUSG00000090607 ENSMUST00000165496 Gm17052 processed_pseudogene Interval_116927 chr4 118265728 118265980 + 0 NA intron (ENSMUSG00000033295.14, intron 5 of 9) protein_coding-intron (ENSMUSG00000033295.14, intron 5 of 32) 25420 ENSMUSG00000033295.14 ENSMUSG00000033295 ENSMUST00000222620 Ptprf protein_coding Interval_54550 chr14 70626130 70627330 + 0 NA promoter-TSS (ENSMUSG00000022099.17) protein_coding-promoter-TSS (ENSMUSG00000022099.17) 2269 ENSMUSG00000022099.17 ENSMUSG00000022099 ENSMUST00000226543 Dmtn protein_coding Interval_67156 chr16 43979090 43980226 + 0 NA promoter-TSS (ENSMUSG00000036304.14) protein_coding-promoter-TSS (ENSMUSG00000036304.14) -496 ENSMUSG00000036304.14 ENSMUSG00000036304 ENSMUST00000165648 Zdhhc23 protein_coding Interval_171269 chr9 115850381 115850764 + 0 NA Intergenic Intergenic -86570 ENSMUSG00000056880.12 ENSMUSG00000056880 ENSMUST00000121770 Gadl1 protein_coding Interval_21693 chr11 3735735 3736074 + 0 NA intron (ENSMUSG00000020435.17, intron 2 of 2) protein_coding-intron (ENSMUSG00000020435.17, intron 2 of 13) -37578 ENSMUSG00000083015.1 ENSMUSG00000083015 ENSMUST00000117960 Gm16518 processed_pseudogene Interval_14621 chr10 37114651 37114868 + 0 NA Intergenic Intergenic -14985 ENSMUSG00000103299.1 ENSMUSG00000103299 ENSMUST00000192030 Gm38231 TEC Interval_22962 chr11 18051708 18053127 + 0 NA Intergenic Intergenic -43569 ENSMUSG00000085453.1 ENSMUSG00000085453 ENSMUST00000150694 Gm12018 lincRNA Interval_149435 chr7 98499356 98499913 + 0 NA exon (ENSMUSG00000090958.2, exon 2 of 2) protein_coding-exon (ENSMUSG00000090958.2, exon 2 of 2) -7320 ENSMUSG00000065803.1 ENSMUSG00000065803 ENSMUST00000083869 Gm23040 snRNA Interval_14777 chr10 39769116 39769373 + 0 NA intron (ENSMUSG00000019841.15, intron 2 of 32) protein_coding-intron (ENSMUSG00000019841.15, intron 1 of 31) -16376 ENSMUSG00000081608.1 ENSMUSG00000081608 ENSMUST00000122161 Gm16210 processed_pseudogene Interval_66555 chr16 35062511 35062739 + 0 NA intron (ENSMUSG00000035376.10, intron 1 of 3) protein_coding-intron (ENSMUSG00000035376.10, intron 3 of 6) 14010 ENSMUSG00000035376.10 ENSMUSG00000035376 ENSMUST00000231556 Hacd2 protein_coding Interval_1752 chr1 33536769 33537060 + 0 NA intron (ENSMUSG00000026134.11, intron 7 of 13) protein_coding-intron (ENSMUSG00000026134.11, intron 7 of 13) 54813 ENSMUSG00000101682.1 ENSMUSG00000101682 ENSMUST00000185489 Gm29228 processed_pseudogene Interval_39873 chr12 99259908 99260322 + 0 NA intron (ENSMUSG00000033713.12, intron 1 of 3) protein_coding-intron (ENSMUSG00000033713.12, intron 4 of 5) 14444 ENSMUSG00000093419.1 ENSMUSG00000093419 ENSMUST00000177490 Gm19898 processed_pseudogene Interval_54923 chr14 76266405 76267666 + 0 NA Intergenic Intergenic 15578 ENSMUSG00000115625.1 ENSMUSG00000115625 ENSMUST00000227933 2900040C04Rik lincRNA Interval_78500 chr18 13738708 13740119 + 0 NA intron (ENSMUSG00000024420.9, intron 2 of 5) protein_coding-intron (ENSMUSG00000024420.9, intron 5 of 7) 136913 ENSMUSG00000024420.9 ENSMUSG00000024420 ENSMUST00000234025 Zfp521 protein_coding Interval_95745 chr2 115678354 115679909 + 0 NA intron (ENSMUSG00000040282.13, intron 8 of 10) protein_coding-intron (ENSMUSG00000040282.13, intron 8 of 10) 40406 ENSMUSG00000088606.1 ENSMUSG00000088606 ENSMUST00000157981 Mir1951 miRNA Interval_144172 chr7 19789719 19790695 + 0 NA TTS (ENSMUSG00000040525.13) protein_coding-TTS (ENSMUSG00000040525.13) -4767 ENSMUSG00000040525.13 ENSMUSG00000040525 ENSMUST00000131602 Cblc protein_coding Interval_113111 chr4 48419912 48420187 + 0 NA intron (ENSMUSG00000028344.12, intron 11 of 13) protein_coding-intron (ENSMUSG00000028344.12, intron 13 of 16) 53373 ENSMUSG00000028345.15 ENSMUSG00000028345 ENSMUST00000132911 Tex10 protein_coding Interval_73269 chr17 35887375 35888963 + 0 NA exon (ENSMUSG00000024422.14, exon 15 of 20) protein_coding-exon (ENSMUSG00000024422.14, exon 15 of 20) 233 ENSMUSG00000024422.14 ENSMUSG00000024422 ENSMUST00000174308 Dhx16 protein_coding Interval_127577 chr5 105501973 105502247 + 0 NA Intergenic Intergenic 6640 ENSMUSG00000105826.1 ENSMUSG00000105826 ENSMUST00000196534 Gm42141 TEC Interval_22041 chr11 5949475 5950414 + 0 NA exon (ENSMUSG00000041798.15, exon 1 of 10) protein_coding-exon (ENSMUSG00000041798.15, exon 1 of 10) -9360 ENSMUSG00000002741.9 ENSMUSG00000002741 ENSMUST00000143834 Ykt6 protein_coding Interval_48101 chr13 96004153 96004596 + 0 NA intron (ENSMUSG00000051111.16, intron 3 of 10) protein_coding-intron (ENSMUSG00000051111.16, intron 4 of 12) -14148 ENSMUSG00000051111.16 ENSMUSG00000051111 ENSMUST00000220740 Sv2c protein_coding Interval_24826 chr11 39948535 39948756 + 0 NA Intergenic Intergenic -59549 ENSMUSG00000085301.1 ENSMUSG00000085301 ENSMUST00000130945 Gm12132 lincRNA Interval_162715 chr9 7972544 7974141 + 0 NA TTS (ENSMUSG00000053110.13) protein_coding-TTS (ENSMUSG00000053110.13) 7504 ENSMUSG00000092185.1 ENSMUSG00000092185 ENSMUST00000174760 Gm20416 processed_transcript Interval_93562 chr2 74210107 74210592 + 0 NA Intergenic Intergenic 74592 ENSMUSG00000084791.1 ENSMUSG00000084791 ENSMUST00000132332 Gm13667 lincRNA Interval_89017 chr2 14548191 14548567 + 0 NA Intergenic Intergenic 35780 ENSMUSG00000084901.6 ENSMUSG00000084901 ENSMUST00000193364 Gm13266 processed_transcript Interval_54540 chr14 70577368 70578635 + 0 NA promoter-TSS (ENSMUSG00000045211.5) protein_coding-promoter-TSS (ENSMUSG00000045211.5) -91 ENSMUSG00000045211.5 ENSMUSG00000045211 ENSMUST00000228768 Nudt18 protein_coding Interval_100330 chr2 168438911 168439580 + 0 NA Intergenic Intergenic -20671 ENSMUSG00000082239.1 ENSMUSG00000082239 ENSMUST00000119539 Gm14234 processed_pseudogene Interval_34571 chr12 5235783 5236061 + 0 NA promoter-TSS (ENSMUSG00000112020.1) TEC-promoter-TSS (ENSMUSG00000112020.1) 42 ENSMUSG00000112020.1 ENSMUSG00000112020 ENSMUST00000219031 Gm48532 TEC Interval_49363 chr13 111471459 111471886 + 0 NA intron (ENSMUSG00000116016.1, intron 1 of 7) protein_coding-intron (ENSMUSG00000032745.18, intron 2 of 12) -18249 ENSMUSG00000032745.18 ENSMUSG00000032745 ENSMUST00000129638 Gpbp1 protein_coding Interval_83085 chr18 81166861 81168027 + 0 NA Intergenic Intergenic 68622 ENSMUSG00000097181.1 ENSMUSG00000097181 ENSMUST00000181204 4930594M17Rik lincRNA Interval_23275 chr11 21106361 21107071 + 0 NA intron (ENSMUSG00000020134.13, intron 1 of 6) protein_coding-intron (ENSMUSG00000020134.13, intron 1 of 6) 7182 ENSMUSG00000084362.1 ENSMUSG00000084362 ENSMUST00000121233 2610024D14Rik processed_pseudogene Interval_62106 chr15 86718637 86719593 + 0 NA Intergenic Intergenic -7380 ENSMUSG00000116303.1 ENSMUSG00000116303 ENSMUST00000230648 Gm49465 processed_pseudogene Interval_150104 chr7 106567819 106568945 + 0 NA Intergenic Intergenic 35653 ENSMUSG00000073902.5 ENSMUSG00000073902 ENSMUST00000184540 Gm1966 unprocessed_pseudogene Interval_100301 chr2 168267964 168269265 + 0 NA TTS (ENSMUSG00000074575.4) protein_coding-TTS (ENSMUSG00000074575.4) 13122 ENSMUSG00000074575.4 ENSMUSG00000074575 ENSMUST00000131749 Kcng1 protein_coding Interval_79076 chr18 24367413 24367688 + 0 NA Intergenic Intergenic 28184 ENSMUSG00000117570.1 ENSMUSG00000117570 ENSMUST00000234938 Gm38410 lincRNA Interval_159845 chr8 104308104 104310126 + 0 NA intron (ENSMUSG00000110430.2, intron 1 of 3) protein_coding-intron (ENSMUSG00000110430.2, intron 1 of 3) 939 ENSMUSG00000110430.2 ENSMUSG00000110430 ENSMUST00000159039 Cmtm1 protein_coding Interval_110162 chr3 153892060 153892392 + 0 NA intron (ENSMUSG00000005493.15, intron 5 of 20) protein_coding-intron (ENSMUSG00000005493.15, intron 4 of 19) -11983 ENSMUSG00000005493.15 ENSMUSG00000005493 ENSMUST00000190449 Msh4 protein_coding Interval_135317 chr6 38292653 38293917 + 0 NA intron (ENSMUSG00000047749.2, intron 3 of 3) protein_coding-intron (ENSMUSG00000047749.2, intron 3 of 3) 5974 ENSMUSG00000047749.2 ENSMUSG00000047749 ENSMUST00000058524 Zc3hav1l protein_coding Interval_15567 chr10 51589749 51590693 + 0 NA intron (ENSMUSG00000019909.4, intron 1 of 3) protein_coding-intron (ENSMUSG00000019909.4, intron 1 of 3) 296 ENSMUSG00000019909.4 ENSMUSG00000019909 ENSMUST00000020064 Fam162b protein_coding Interval_125916 chr5 75668340 75669867 + 0 NA Intergenic Intergenic 20009 ENSMUSG00000005672.12 ENSMUSG00000005672 ENSMUST00000201240 Kit protein_coding Interval_50888 chr14 20489494 20489711 + 0 NA intron (ENSMUSG00000021815.4, intron 1 of 6) protein_coding-intron (ENSMUSG00000021815.4, intron 1 of 6) 7299 ENSMUSG00000021815.4 ENSMUSG00000021815 ENSMUST00000022353 Mss51 protein_coding Interval_30435 chr11 94342563 94342957 + 0 NA TTS (ENSMUSG00000020865.16) protein_coding-TTS (ENSMUSG00000020865.16) 9307 ENSMUSG00000020864.13 ENSMUSG00000020864 ENSMUST00000124087 Ankrd40 protein_coding Interval_66084 chr16 31488875 31489695 + 0 NA Intergenic Intergenic -19102 ENSMUSG00000116762.1 ENSMUSG00000116762 ENSMUST00000231805 Gm46560 lincRNA Interval_52085 chr14 35510695 35511421 + 0 NA intron (ENSMUSG00000041078.7, intron 12 of 15) protein_coding-intron (ENSMUSG00000041078.7, intron 12 of 15) 38068 ENSMUSG00000115277.1 ENSMUSG00000115277 ENSMUST00000227874 Gm19016 processed_pseudogene Interval_46978 chr13 73910700 73910992 + 0 NA TTS (ENSMUSG00000021569.10) protein_coding-TTS (ENSMUSG00000021569.10) 13864 ENSMUSG00000095943.1 ENSMUSG00000095943 ENSMUST00000175516 Gm25197 miRNA Interval_162521 chr9 3613833 3614676 + 0 NA intron (ENSMUSG00000041624.10, intron 3 of 4) protein_coding-intron (ENSMUSG00000041624.10, intron 3 of 7) 81366 ENSMUSG00000041624.10 ENSMUSG00000041624 ENSMUST00000212705 Gucy1a2 protein_coding Interval_69631 chr16 94736186 94737251 + 0 NA intron (ENSMUSG00000116641.1, intron 1 of 4) antisense-intron (ENSMUSG00000116641.1, intron 1 of 4) 14824 ENSMUSG00000116641.1 ENSMUSG00000116641 ENSMUST00000232585 Gm41505 antisense Interval_143398 chr7 6389516 6390059 + 0 NA promoter-TSS (ENSMUSG00000062861.8) protein_coding-promoter-TSS (ENSMUSG00000062861.8) 6198 ENSMUSG00000062861.8 ENSMUSG00000062861 ENSMUST00000207809 Zfp28 protein_coding Interval_64878 chr16 16920838 16921885 + 0 NA intron (ENSMUSG00000026181.13, intron 6 of 7) protein_coding-intron (ENSMUSG00000026181.13, intron 6 of 7) -9645 ENSMUSG00000116823.1 ENSMUSG00000116823 ENSMUST00000231277 Gm49595 antisense Interval_174461 chrX 152763732 152764448 + 0 NA intron (ENSMUSG00000045180.13, intron 1 of 9) protein_coding-intron (ENSMUSG00000045180.13, intron 1 of 9) -17831 ENSMUSG00000025333.10 ENSMUSG00000025333 ENSMUST00000139310 Gpr143 protein_coding Interval_125616 chr5 72754669 72754930 + 0 NA TTS (ENSMUSG00000029217.16) protein_coding-TTS (ENSMUSG00000029217.16) -18893 ENSMUSG00000054892.14 ENSMUSG00000054892 ENSMUST00000197923 Txk protein_coding Interval_79838 chr18 35493038 35493254 + 0 NA TTS (ENSMUSG00000117731.1) antisense-TTS (ENSMUSG00000117731.1) -2302 ENSMUSG00000118184.1 ENSMUSG00000118184 ENSMUST00000235658 Gm50144 processed_pseudogene Interval_5802 chr1 91987644 91988705 + 0 NA TTS (ENSMUSG00000026313.16) protein_coding-TTS (ENSMUSG00000026313.16) 12187 ENSMUSG00000103101.1 ENSMUSG00000103101 ENSMUST00000194827 Gm37048 TEC Interval_132680 chr5 147115584 147115837 + 0 NA Intergenic Intergenic -14657 ENSMUSG00000083988.1 ENSMUSG00000083988 ENSMUST00000120308 Rps10-ps4 processed_pseudogene Interval_154547 chr8 19293132 19293493 + 0 NA promoter-TSS (ENSMUSG00000039775.7) protein_coding-promoter-TSS (ENSMUSG00000039775.7) -48 ENSMUSG00000039775.7 ENSMUSG00000039775 ENSMUST00000033852 Defb3 protein_coding Interval_146797 chr7 51734919 51735122 + 0 NA Intergenic Intergenic -11627 ENSMUSG00000078636.4 ENSMUSG00000078636 ENSMUST00000107041 Gm7336 processed_pseudogene Interval_169543 chr9 99007582 99008748 + 0 NA intron (ENSMUSG00000044860.9, intron 7 of 7) protein_coding-intron (ENSMUSG00000044860.9, intron 7 of 7) 21764 ENSMUSG00000032463.10 ENSMUSG00000032463 ENSMUST00000185472 Faim protein_coding Interval_66501 chr16 34397158 34397403 + 0 NA intron (ENSMUSG00000061751.16, intron 1 of 36) protein_coding-intron (ENSMUSG00000061751.16, intron 1 of 59) -269037 ENSMUSG00000022832.11 ENSMUSG00000022832 ENSMUST00000231612 Ropn1 protein_coding Interval_91519 chr2 40378020 40378556 + 0 NA Intergenic Intergenic 79771 ENSMUSG00000088512.1 ENSMUSG00000088512 ENSMUST00000157887 Gm24467 snoRNA Interval_30309 chr11 93462899 93463316 + 0 NA intron (ENSMUSG00000056158.14, intron 4 of 9) protein_coding-intron (ENSMUSG00000056158.14, intron 4 of 9) -49783 ENSMUSG00000064743.1 ENSMUSG00000064743 ENSMUST00000082809 Gm24856 snRNA Interval_115378 chr4 98375572 98376028 + 0 NA promoter-TSS (ENSMUSG00000028563.16) protein_coding-promoter-TSS (ENSMUSG00000028563.16) 7432 ENSMUSG00000028563.16 ENSMUSG00000028563 ENSMUST00000143116 Tm2d1 protein_coding Interval_117749 chr4 126000293 126002244 + 0 NA Intergenic Intergenic -23458 ENSMUSG00000028859.14 ENSMUSG00000028859 ENSMUST00000140426 Csf3r protein_coding Interval_138557 chr6 89296808 89297159 + 0 NA Intergenic Intergenic -7647 ENSMUSG00000097816.1 ENSMUSG00000097816 ENSMUST00000181258 Gm26811 antisense Interval_40837 chr12 108765229 108766564 + 0 NA Intergenic Intergenic -2926 ENSMUSG00000112971.1 ENSMUSG00000112971 ENSMUST00000222233 Gm33682 lincRNA Interval_145290 chr7 31161805 31162715 + 0 NA promoter-TSS (ENSMUSG00000100985.1) antisense-promoter-TSS (ENSMUSG00000100985.1) -98 ENSMUSG00000100985.1 ENSMUSG00000100985 ENSMUST00000190947 Gm10640 antisense Interval_153793 chr8 8655638 8655962 + 0 NA intron (ENSMUSG00000001300.16, intron 1 of 4) protein_coding-intron (ENSMUSG00000001300.16, intron 1 of 4) 5439 ENSMUSG00000001300.16 ENSMUSG00000001300 ENSMUST00000209169 Efnb2 protein_coding Interval_24722 chr11 36220696 36221890 + 0 NA intron (ENSMUSG00000049336.16, intron 6 of 28) protein_coding-intron (ENSMUSG00000049336.16, intron 6 of 28) -56748 ENSMUSG00000086375.1 ENSMUSG00000086375 ENSMUST00000123278 Gm12127 antisense Interval_33967 chr11 119721932 119722315 + 0 NA intron (ENSMUSG00000025583.15, intron 3 of 32) protein_coding-intron (ENSMUSG00000025583.15, intron 3 of 33) -24278 ENSMUSG00000088670.1 ENSMUSG00000088670 ENSMUST00000158045 Gm23663 snoRNA Interval_134666 chr6 30219354 30220372 + 0 NA intron (ENSMUSG00000039159.16, intron 4 of 4) protein_coding-intron (ENSMUSG00000039159.16, intron 4 of 4) 46970 ENSMUSG00000103108.2 ENSMUSG00000103108 ENSMUST00000194541 Rncr4 lincRNA Interval_164474 chr9 37312064 37312361 + 0 NA promoter-TSS (ENSMUSG00000111748.1) antisense-promoter-TSS (ENSMUSG00000111748.1) 76 ENSMUSG00000111748.1 ENSMUSG00000111748 ENSMUST00000217440 Gm34885 antisense Interval_34496 chr12 4635052 4635463 + 0 NA intron (ENSMUSG00000020640.10, intron 12 of 39) protein_coding-intron (ENSMUSG00000020640.10, intron 12 of 38) 20631 ENSMUSG00000111971.1 ENSMUSG00000111971 ENSMUST00000218352 Gm48678 antisense Interval_69493 chr16 93852022 93852745 + 0 NA intron (ENSMUSG00000039456.10, intron 6 of 13) protein_coding-intron (ENSMUSG00000039456.10, intron 6 of 16) -8130 ENSMUSG00000039456.10 ENSMUSG00000039456 ENSMUST00000232639 Morc3 protein_coding Interval_108277 chr3 123234153 123234688 + 0 NA intron (ENSMUSG00000050315.14, intron 1 of 1) protein_coding-intron (ENSMUSG00000050315.14, intron 1 of 4) 1727 ENSMUSG00000050315.14 ENSMUSG00000050315 ENSMUST00000184403 Synpo2 protein_coding Interval_7246 chr1 128216570 128217079 + 0 NA intron (ENSMUSG00000056211.13, intron 2 of 7) protein_coding-intron (ENSMUSG00000056211.13, intron 21 of 26) 14463 ENSMUSG00000065520.2 ENSMUSG00000065520 ENSMUST00000083586 Mir128-1 miRNA Interval_62231 chr15 89032976 89033295 + 0 NA intron (ENSMUSG00000015365.15, intron 22 of 26) protein_coding-intron (ENSMUSG00000015365.15, intron 22 of 26) 13914 ENSMUSG00000064481.1 ENSMUSG00000064481 ENSMUST00000082547 Gm23737 snRNA Interval_84613 chr19 14443524 14443897 + 0 NA Intergenic Intergenic 151829 ENSMUSG00000024642.17 ENSMUSG00000024642 ENSMUST00000235975 Tle4 protein_coding Interval_18848 chr10 91258079 91259059 + 0 NA exon (ENSMUSG00000110847.1, exon 1 of 2) processed_pseudogene-exon (ENSMUSG00000110847.1, exon 1 of 2) 775 ENSMUSG00000110847.1 ENSMUSG00000110847 ENSMUST00000215985 Gm18705 processed_pseudogene Interval_137024 chr6 66528379 66529712 + 0 NA TTS (ENSMUSG00000108086.1) processed_pseudogene-TTS (ENSMUSG00000108086.1) 2031 ENSMUSG00000108086.1 ENSMUSG00000108086 ENSMUST00000203165 Gm6786 processed_pseudogene Interval_119511 chr4 138027334 138027736 + 0 NA intron (ENSMUSG00000028760.16, intron 2 of 8) protein_coding-intron (ENSMUSG00000028760.16, intron 2 of 9) 34022 ENSMUSG00000028760.16 ENSMUSG00000028760 ENSMUST00000148074 Eif4g3 protein_coding Interval_35550 chr12 24734866 24735140 + 0 NA Intergenic Intergenic -25222 ENSMUSG00000113062.1 ENSMUSG00000113062 ENSMUST00000221016 Gm48895 processed_pseudogene Interval_137397 chr6 71908363 71910027 + 0 NA promoter-TSS (ENSMUSG00000063884.6) protein_coding-promoter-TSS (ENSMUSG00000063884.6) -445 ENSMUSG00000063884.6 ENSMUSG00000063884 ENSMUST00000205420 Ptcd3 protein_coding Interval_149410 chr7 98207507 98208074 + 0 NA exon (ENSMUSG00000030760.14, exon 11 of 11) protein_coding-exon (ENSMUSG00000030760.14, exon 11 of 11) -8309 ENSMUSG00000074004.3 ENSMUSG00000074004 ENSMUST00000098278 B3gnt6 protein_coding Interval_13043 chr10 9900279 9902220 + 0 NA promoter-TSS (ENSMUSG00000019790.17) protein_coding-promoter-TSS (ENSMUSG00000019790.17) -64 ENSMUSG00000112146.1 ENSMUSG00000112146 ENSMUST00000218800 Gm46210 lincRNA Interval_43261 chr13 27960199 27961502 + 0 NA Intergenic Intergenic 4697 ENSMUSG00000113281.1 ENSMUSG00000113281 ENSMUST00000221898 Gm11360 processed_pseudogene Interval_86411 chr19 40307349 40308346 + 0 NA intron (ENSMUSG00000025006.18, intron 1 of 4) protein_coding-intron (ENSMUSG00000025006.18, intron 19 of 21) 9876 ENSMUSG00000114796.1 ENSMUSG00000114796 ENSMUST00000225358 A930028N01Rik antisense Interval_168659 chr9 85587380 85588379 + 0 NA Intergenic Intergenic -34114 ENSMUSG00000110956.1 ENSMUSG00000110956 ENSMUST00000216435 Gm48834 lincRNA Interval_33140 chr11 114706741 114707437 + 0 NA intron (ENSMUSG00000034714.9, intron 6 of 13) protein_coding-intron (ENSMUSG00000034714.9, intron 6 of 13) -20319 ENSMUSG00000034706.16 ENSMUSG00000034706 ENSMUST00000130692 Dnaic2 protein_coding Interval_84135 chr19 7436093 7436905 + 0 NA intron (ENSMUSG00000024758.15, intron 1 of 6) protein_coding-intron (ENSMUSG00000024758.15, intron 2 of 7) 13926 ENSMUSG00000098293.1 ENSMUSG00000098293 ENSMUST00000183837 Mir6991 miRNA Interval_11092 chr1 179302702 179303052 + 0 NA intron (ENSMUSG00000055067.15, intron 5 of 11) protein_coding-intron (ENSMUSG00000055067.15, intron 5 of 11) 215128 ENSMUSG00000055067.15 ENSMUSG00000055067 ENSMUST00000194237 Smyd3 protein_coding Interval_136865 chr6 61884677 61885004 + 0 NA intron (ENSMUSG00000039578.17, intron 9 of 10) protein_coding-intron (ENSMUSG00000039578.17, intron 8 of 9) -71849 ENSMUSG00000039578.17 ENSMUSG00000039578 ENSMUST00000232648 Ccser1 protein_coding Interval_6653 chr1 118559128 118559355 + 0 NA intron (ENSMUSG00000064302.13, intron 4 of 8) protein_coding-intron (ENSMUSG00000064302.13, intron 30 of 39) 46524 ENSMUSG00000064302.13 ENSMUSG00000064302 ENSMUST00000187575 Clasp1 protein_coding Interval_162127 chr8 125361168 125361700 + 0 NA Intergenic Intergenic -134111 ENSMUSG00000086694.1 ENSMUSG00000086694 ENSMUST00000156666 Gm16237 antisense Interval_99492 chr2 162518868 162519168 + 0 NA intron (ENSMUSG00000053141.16, intron 1 of 29) protein_coding-intron (ENSMUSG00000053141.16, intron 1 of 30) 128205 ENSMUSG00000084919.1 ENSMUSG00000084919 ENSMUST00000151688 Ptprtos antisense Interval_156397 chr8 47908621 47909137 + 0 NA intron (ENSMUSG00000031563.8, intron 2 of 22) protein_coding-intron (ENSMUSG00000031563.8, intron 2 of 22) 9697 ENSMUSG00000064519.1 ENSMUSG00000064519 ENSMUST00000082585 n-R5s97 rRNA Interval_83271 chr18 83285563 83286208 + 0 NA Intergenic Intergenic 39999 ENSMUSG00000118333.1 ENSMUSG00000118333 ENSMUST00000236997 4921531P14Rik lincRNA Interval_40964 chr12 110300038 110300252 + 0 NA Intergenic Intergenic -15845 ENSMUSG00000113198.1 ENSMUSG00000113198 ENSMUST00000222676 Gm6988 processed_pseudogene Interval_90212 chr2 29053024 29055367 + 0 NA intron (ENSMUSG00000079502.8, intron 1 of 1) protein_coding-intron (ENSMUSG00000079502.8, intron 1 of 1) -6071 ENSMUSG00000026803.17 ENSMUSG00000026803 ENSMUST00000130506 Ttf1 protein_coding Interval_173412 chrX 91208551 91208790 + 0 NA Intergenic Intergenic 44077 ENSMUSG00000080427.1 ENSMUSG00000080427 ENSMUST00000116777 Gm24835 miRNA Interval_48750 chr13 102734913 102735285 + 0 NA TTS (ENSMUSG00000034751.17) protein_coding-TTS (ENSMUSG00000034751.17) -25156 ENSMUSG00000091906.2 ENSMUSG00000091906 ENSMUST00000167834 1700099I09Rik antisense Interval_25148 chr11 44550675 44551821 + 0 NA intron (ENSMUSG00000019189.13, intron 5 of 5) protein_coding-intron (ENSMUSG00000019189.13, intron 5 of 10) -5583 ENSMUSG00000019189.13 ENSMUSG00000019189 ENSMUST00000129676 Rnf145 protein_coding Interval_146974 chr7 56577495 56578253 + 0 NA Intergenic Intergenic -170400 ENSMUSG00000108488.1 ENSMUSG00000108488 ENSMUST00000206218 Gm44979 processed_pseudogene Interval_37928 chr12 73094462 73094739 + 0 NA Intergenic Intergenic 18856 ENSMUSG00000034460.9 ENSMUSG00000034460 ENSMUST00000175693 Six4 protein_coding Interval_3295 chr1 55838165 55838418 + 0 NA Intergenic Intergenic -92950 ENSMUSG00000099950.1 ENSMUSG00000099950 ENSMUST00000188040 9130227L01Rik lincRNA Interval_84618 chr19 14473176 14474122 + 0 NA intron (ENSMUSG00000024642.17, intron 8 of 19) protein_coding-intron (ENSMUSG00000024642.17, intron 8 of 19) 121890 ENSMUSG00000024642.17 ENSMUSG00000024642 ENSMUST00000235975 Tle4 protein_coding Interval_128231 chr5 111893884 111894501 + 0 NA Intergenic Intergenic 50043 ENSMUSG00000106060.1 ENSMUSG00000106060 ENSMUST00000197648 Gm42488 lincRNA Interval_65431 chr16 22301523 22303115 + 0 NA intron (ENSMUSG00000116857.2, intron 3 of 4) unprocessed_pseudogene-intron (ENSMUSG00000116857.2, intron 3 of 4) 6181 ENSMUSG00000116857.2 ENSMUSG00000116857 ENSMUST00000231661 Gm49582 unprocessed_pseudogene Interval_126548 chr5 90182528 90183289 + 0 NA Intergenic Intergenic 33114 ENSMUSG00000035505.14 ENSMUSG00000035505 ENSMUST00000148480 Cox18 protein_coding Interval_103492 chr3 44665582 44666404 + 0 NA Intergenic Intergenic 6091 ENSMUSG00000104051.1 ENSMUSG00000104051 ENSMUST00000192085 Gm38128 TEC Interval_53770 chr14 61629830 61630138 + 0 NA TTS (ENSMUSG00000098967.1) misc_RNA-TTS (ENSMUSG00000098967.1) 500 ENSMUSG00000098088.1 ENSMUSG00000098088 ENSMUST00000183304 Gm26916 lincRNA Interval_102310 chr3 21672102 21673933 + 0 NA Intergenic Intergenic 24630 ENSMUSG00000106460.1 ENSMUSG00000106460 ENSMUST00000196649 Gm17935 processed_pseudogene Interval_144329 chr7 24504981 24507652 + 0 NA promoter-TSS (ENSMUSG00000064264.14) protein_coding-promoter-TSS (ENSMUSG00000064264.14) -783 ENSMUSG00000064264.14 ENSMUSG00000064264 ENSMUST00000177205 Zfp428 protein_coding Interval_111891 chr4 32297309 32297757 + 0 NA intron (ENSMUSG00000040270.16, intron 1 of 1) protein_coding-intron (ENSMUSG00000040270.16, intron 1 of 7) 45772 ENSMUSG00000087049.1 ENSMUSG00000087049 ENSMUST00000133451 Bach2it1 sense_intronic Interval_49980 chr13 119267899 119268146 + 0 NA Intergenic Intergenic 1582 ENSMUSG00000105411.1 ENSMUSG00000105411 ENSMUST00000199467 Gm44488 miRNA Interval_173311 chrX 77810489 77811121 + 0 NA Intergenic Intergenic -7525 ENSMUSG00000085973.1 ENSMUSG00000085973 ENSMUST00000148284 Gm14742 lincRNA Interval_123648 chr5 34269968 34270257 + 0 NA intron (ENSMUSG00000037224.15, intron 1 of 3) protein_coding-intron (ENSMUSG00000037224.15, intron 1 of 12) -18488 ENSMUSG00000109572.1 ENSMUSG00000109572 ENSMUST00000207754 Cfap99 protein_coding Interval_41106 chr12 111201550 111202612 + 0 NA intron (ENSMUSG00000021277.16, intron 2 of 4) protein_coding-intron (ENSMUSG00000021277.16, intron 1 of 11) -17590 ENSMUSG00000083193.1 ENSMUSG00000083193 ENSMUST00000121608 4930595D18Rik protein_coding Interval_21548 chr10 129700781 129701004 + 0 NA Intergenic Intergenic -2341 ENSMUSG00000095401.2 ENSMUSG00000095401 ENSMUST00000077312 Olfr804 protein_coding Interval_42719 chr13 18502683 18503422 + 0 NA Intergenic Intergenic -105366 ENSMUSG00000009734.18 ENSMUSG00000009734 ENSMUST00000222900 Pou6f2 protein_coding Interval_156601 chr8 54248498 54248715 + 0 NA Intergenic Intergenic 170827 ENSMUSG00000031520.6 ENSMUSG00000031520 ENSMUST00000210831 Vegfc protein_coding Interval_139422 chr6 100026690 100028199 + 0 NA Intergenic Intergenic -36229 ENSMUSG00000108151.1 ENSMUSG00000108151 ENSMUST00000204791 Gm33201 lincRNA Interval_129408 chr5 119796833 119798022 + 0 NA Intergenic Intergenic 10442 ENSMUSG00000107053.1 ENSMUSG00000107053 ENSMUST00000202127 1700021F13Rik lincRNA Interval_166571 chr9 60989850 60990274 + 0 NA Intergenic Intergenic -27007 ENSMUSG00000111290.1 ENSMUSG00000111290 ENSMUST00000216854 Gm5122 lincRNA Interval_149054 chr7 92729863 92730180 + 0 NA exon (ENSMUSG00000098041.1, exon 1 of 2) lincRNA-exon (ENSMUSG00000098041.1, exon 1 of 2) 181 ENSMUSG00000098041.1 ENSMUSG00000098041 ENSMUST00000182453 Gm26981 lincRNA Interval_4817 chr1 79696850 79697177 + 0 NA Intergenic Intergenic -25041 ENSMUSG00000054702.14 ENSMUSG00000054702 ENSMUST00000160706 Ap1s3 protein_coding Interval_15938 chr10 59472832 59473267 + 0 NA intron (ENSMUSG00000009647.13, intron 2 of 7) protein_coding-intron (ENSMUSG00000009647.13, intron 2 of 7) -41963 ENSMUSG00000009654.4 ENSMUSG00000009654 ENSMUST00000162493 Oit3 protein_coding Interval_38889 chr12 83631748 83633047 + 0 NA promoter-TSS (ENSMUSG00000010608.15) protein_coding-promoter-TSS (ENSMUSG00000010608.15) 1436 ENSMUSG00000099708.1 ENSMUSG00000099708 ENSMUST00000183323 Gm29361 antisense Interval_35737 chr12 28763206 28763736 + 0 NA intron (ENSMUSG00000036613.8, intron 2 of 8) protein_coding-intron (ENSMUSG00000036613.8, intron 2 of 9) 11632 ENSMUSG00000036613.8 ENSMUSG00000036613 ENSMUST00000220933 Eipr1 protein_coding Interval_135079 chr6 35226574 35227493 + 0 NA intron (ENSMUSG00000038759.15, intron 3 of 9) protein_coding-intron (ENSMUSG00000038759.15, intron 28 of 42) -16562 ENSMUSG00000087808.1 ENSMUSG00000087808 ENSMUST00000157183 Gm23435 snRNA Interval_140170 chr6 114974187 114974834 + 0 NA Intergenic Intergenic -52694 ENSMUSG00000030315.15 ENSMUSG00000030315 ENSMUST00000204693 Vgll4 protein_coding Interval_91866 chr2 50755502 50756154 + 0 NA Intergenic Intergenic -97761 ENSMUSG00000082846.1 ENSMUSG00000082846 ENSMUST00000120738 Gm13484 processed_pseudogene Interval_104132 chr3 58908406 58908873 + 0 NA Intergenic Intergenic -42842 ENSMUSG00000043850.15 ENSMUSG00000043850 ENSMUST00000161419 Clrn1 protein_coding Interval_117019 chr4 119043918 119044341 + 0 NA Intergenic Intergenic 24982 ENSMUSG00000066060.5 ENSMUSG00000066060 ENSMUST00000128998 Gm12866 lincRNA Interval_25770 chr11 51624882 51625986 + 0 NA intron (ENSMUSG00000001054.9, intron 1 of 3) protein_coding-intron (ENSMUSG00000001054.9, intron 7 of 9) 400 ENSMUSG00000001054.9 ENSMUSG00000001054 ENSMUST00000132854 Rmnd5b protein_coding Interval_10668 chr1 172555970 172556173 + 0 NA exon (ENSMUSG00000049598.9, exon 1 of 7) protein_coding-exon (ENSMUSG00000049598.9, exon 1 of 7) 2058 ENSMUSG00000085184.9 ENSMUSG00000085184 ENSMUST00000169111 4933439K11Rik processed_transcript Interval_85572 chr19 28717275 28717535 + 0 NA intron (ENSMUSG00000097735.7, intron 4 of 4) lincRNA-intron (ENSMUSG00000097735.7, intron 4 of 4) 25146 ENSMUSG00000067351.1 ENSMUSG00000067351 ENSMUST00000087473 Rps15a-ps2 processed_pseudogene Interval_166054 chr9 56124484 56125235 + 0 NA TTS (ENSMUSG00000032322.14) protein_coding-TTS (ENSMUSG00000032322.14) 34883 ENSMUSG00000032322.14 ENSMUSG00000032322 ENSMUST00000132800 Pstpip1 protein_coding Interval_73978 chr17 45814427 45815658 + 0 NA intron (ENSMUSG00000117139.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000117139.1, intron 1 of 2) 7281 ENSMUSG00000117139.1 ENSMUSG00000117139 ENSMUST00000233237 Gm35692 lincRNA Interval_34621 chr12 8068547 8069498 + 0 NA intron (ENSMUSG00000112694.1, intron 2 of 3) antisense-intron (ENSMUSG00000112694.1, intron 2 of 3) 91374 ENSMUSG00000020609.14 ENSMUSG00000020609 ENSMUST00000171239 Apob protein_coding Interval_88200 chr19 60608696 60609232 + 0 NA Intergenic Intergenic -2323 ENSMUSG00000117790.1 ENSMUSG00000117790 ENSMUST00000236155 Gm46652 lincRNA Interval_165284 chr9 46020497 46022116 + 0 NA intron (ENSMUSG00000034135.15, intron 1 of 24) protein_coding-intron (ENSMUSG00000034135.15, intron 1 of 22) -36523 ENSMUSG00000003131.7 ENSMUSG00000003131 ENSMUST00000214996 Pafah1b2 protein_coding Interval_41313 chr12 112653021 112653773 + 0 NA TTS (ENSMUSG00000001729.14) protein_coding-TTS (ENSMUSG00000001729.14) 3576 ENSMUSG00000001729.14 ENSMUSG00000001729 ENSMUST00000127902 Akt1 protein_coding Interval_171174 chr9 114965512 114967716 + 0 NA Intergenic Intergenic 16125 ENSMUSG00000050621.7 ENSMUSG00000050621 ENSMUST00000053150 Rps27rt protein_coding Interval_48021 chr13 95324418 95326089 + 0 NA promoter-TSS (ENSMUSG00000041995.8) protein_coding-promoter-TSS (ENSMUSG00000041995.8) -1514 ENSMUSG00000041995.8 ENSMUSG00000041995 ENSMUST00000222456 Zbed3 protein_coding Interval_19442 chr10 99284367 99284589 + 0 NA Intergenic Intergenic 9773 ENSMUSG00000112544.1 ENSMUSG00000112544 ENSMUST00000218105 Gm48089 lincRNA Interval_148061 chr7 78926285 78926613 + 0 NA Intergenic Intergenic -2563 ENSMUSG00000108670.1 ENSMUSG00000108670 ENSMUST00000206812 Gm44815 TEC Interval_161904 chr8 123655285 123655780 + 0 NA exon (ENSMUSG00000039960.5, exon 2 of 3) protein_coding-exon (ENSMUSG00000039960.5, exon 2 of 3) 1603 ENSMUSG00000039960.5 ENSMUSG00000039960 ENSMUST00000045487 Rhou protein_coding Interval_84271 chr19 9134553 9136109 + 0 NA exon (ENSMUSG00000024658.7, exon 1 of 6) antisense-exon (ENSMUSG00000024658.7, exon 1 of 6) 174 ENSMUSG00000024658.7 ENSMUSG00000024658 ENSMUST00000142025 Gm9750 antisense Interval_15706 chr10 53850562 53850842 + 0 NA Intergenic Intergenic -47173 ENSMUSG00000112809.1 ENSMUSG00000112809 ENSMUST00000217870 Gm47915 lincRNA Interval_145995 chr7 42965276 42966352 + 0 NA Intergenic Intergenic 7463 ENSMUSG00000076190.1 ENSMUSG00000076190 ENSMUST00000102235 Gm23256 miRNA Interval_116460 chr4 112981866 112982311 + 0 NA intron (ENSMUSG00000087194.9, intron 24 of 47) protein_coding-intron (ENSMUSG00000087194.9, intron 25 of 48) -2275 ENSMUSG00000082678.1 ENSMUSG00000082678 ENSMUST00000117562 Gm12818 processed_pseudogene Interval_162550 chr9 4155847 4157058 + 0 NA Intergenic Intergenic -57470 ENSMUSG00000110691.1 ENSMUSG00000110691 ENSMUST00000211927 Gm5363 processed_pseudogene Interval_43869 chr13 37743903 37744285 + 0 NA Intergenic Intergenic -17654 ENSMUSG00000114800.1 ENSMUSG00000114800 ENSMUST00000224394 Gm31600 lincRNA Interval_146858 chr7 53557313 53558272 + 0 NA Intergenic Intergenic 334097 ENSMUSG00000099176.1 ENSMUSG00000099176 ENSMUST00000184140 Mir6238 miRNA Interval_15323 chr10 44493019 44493306 + 0 NA intron (ENSMUSG00000038151.13, intron 1 of 3) protein_coding-intron (ENSMUSG00000038151.13, intron 1 of 3) -35952 ENSMUSG00000038151.13 ENSMUSG00000038151 ENSMUST00000167340 Prdm1 protein_coding Interval_24292 chr11 32149570 32150213 + 0 NA Intergenic Intergenic -35114 ENSMUSG00000081613.1 ENSMUSG00000081613 ENSMUST00000121140 Gm12109 processed_pseudogene Interval_28710 chr11 77868011 77868368 + 0 NA Intergenic Intergenic 16355 ENSMUSG00000017453.4 ENSMUSG00000017453 ENSMUST00000155401 Pipox protein_coding Interval_128840 chr5 115538598 115538953 + 0 NA intron (ENSMUSG00000029528.19, intron 1 of 10) protein_coding-intron (ENSMUSG00000029528.19, intron 1 of 10) -20762 ENSMUSG00000067274.10 ENSMUSG00000067274 ENSMUST00000155584 Rplp0 protein_coding Interval_76081 chr17 74795915 74796486 + 0 NA intron (ENSMUSG00000024078.7, intron 5 of 13) protein_coding-intron (ENSMUSG00000024078.7, intron 12 of 19) 23711 ENSMUSG00000117444.1 ENSMUSG00000117444 ENSMUST00000234963 Gm50020 antisense Interval_45469 chr13 55310397 55311120 + 0 NA intron (ENSMUSG00000021488.8, intron 20 of 20) protein_coding-intron (ENSMUSG00000021488.8, intron 22 of 22) 11188 ENSMUSG00000034789.8 ENSMUSG00000034789 ENSMUST00000223672 Rab24 protein_coding Interval_90020 chr2 27375635 27375952 + 0 NA intron (ENSMUSG00000009621.18, intron 1 of 29) protein_coding-intron (ENSMUSG00000009621.18, intron 2 of 27) -26059 ENSMUSG00000076364.1 ENSMUSG00000076364 ENSMUST00000102409 Gm24049 miRNA Interval_58611 chr15 36565575 36566499 + 0 NA Intergenic Intergenic -17507 ENSMUSG00000105494.1 ENSMUSG00000105494 ENSMUST00000175424 Gm44310 miRNA Interval_26968 chr11 61950472 61951370 + 0 NA promoter-TSS (ENSMUSG00000084805.1) lincRNA-promoter-TSS (ENSMUSG00000084805.1) 6 ENSMUSG00000084805.1 ENSMUSG00000084805 ENSMUST00000137418 Gm12273 lincRNA Interval_106730 chr3 100161885 100163096 + 0 NA promoter-TSS (ENSMUSG00000033285.15) protein_coding-promoter-TSS (ENSMUSG00000033285.15) -93 ENSMUSG00000033285.15 ENSMUSG00000033285 ENSMUST00000197602 Wdr3 protein_coding Interval_5143 chr1 86018093 86018919 + 0 NA exon (ENSMUSG00000026226.16, exon 1 of 4) protein_coding-exon (ENSMUSG00000026226.16, exon 1 of 4) -2620 ENSMUSG00000099342.1 ENSMUSG00000099342 ENSMUST00000187562 Gm18180 processed_pseudogene Interval_65650 chr16 24818853 24819530 + 0 NA intron (ENSMUSG00000033306.15, intron 3 of 7) protein_coding-intron (ENSMUSG00000033306.15, intron 8 of 12) -8664 ENSMUSG00000065494.1 ENSMUSG00000065494 ENSMUST00000083560 Mir28a miRNA Interval_95369 chr2 107009630 107011098 + 0 NA promoter-TSS (ENSMUSG00000082066.1) processed_pseudogene-promoter-TSS (ENSMUSG00000082066.1) -574 ENSMUSG00000082066.1 ENSMUSG00000082066 ENSMUST00000121901 Gm13904 processed_pseudogene Interval_24524 chr11 34002087 34002781 + 0 NA intron (ENSMUSG00000085684.2, intron 4 of 4) protein_coding-intron (ENSMUSG00000085684.2, intron 4 of 4) -9446 ENSMUSG00000053519.17 ENSMUSG00000053519 ENSMUST00000135034 Kcnip1 protein_coding Interval_82407 chr18 73762092 73763116 + 0 NA Intergenic Intergenic -8125 ENSMUSG00000036941.2 ENSMUSG00000036941 ENSMUST00000041138 Elac1 protein_coding Interval_125051 chr5 64116870 64118126 + 0 NA intron (ENSMUSG00000029171.12, intron 13 of 13) protein_coding-intron (ENSMUSG00000029171.12, intron 13 of 13) -9996 ENSMUSG00000093780.1 ENSMUSG00000093780 ENSMUST00000177427 Gm22395 miRNA Interval_154274 chr8 13964681 13964921 + 0 NA intron (ENSMUSG00000050052.12, intron 2 of 3) protein_coding-intron (ENSMUSG00000050052.12, intron 1 of 2) 9892 ENSMUSG00000050052.12 ENSMUSG00000050052 ENSMUST00000119182 Tdrp protein_coding Interval_122624 chr5 24314566 24315075 + 0 NA Intergenic Intergenic 11699 ENSMUSG00000038319.14 ENSMUSG00000038319 ENSMUST00000142197 Kcnh2 protein_coding Interval_57448 chr15 11018914 11019843 + 0 NA intron (ENSMUSG00000022243.10, intron 3 of 6) protein_coding-intron (ENSMUSG00000022243.10, intron 3 of 6) 18613 ENSMUSG00000060735.4 ENSMUSG00000060735 ENSMUST00000058007 Rxfp3 protein_coding Interval_100704 chr2 171838644 171839160 + 0 NA Intergenic Intergenic 123229 ENSMUSG00000086823.7 ENSMUSG00000086823 ENSMUST00000125465 1700028P15Rik processed_transcript Interval_21298 chr10 127721671 127722563 + 0 NA Intergenic Intergenic 2789 ENSMUSG00000025401.9 ENSMUSG00000025401 ENSMUST00000219882 Myo1a protein_coding Interval_50701 chr14 18349997 18351214 + 0 NA Intergenic Intergenic -18861 ENSMUSG00000021774.13 ENSMUSG00000021774 ENSMUST00000161580 Ube2e1 protein_coding Interval_119363 chr4 137211397 137212527 + 0 NA Intergenic Intergenic 8437 ENSMUSG00000080806.1 ENSMUSG00000080806 ENSMUST00000119518 Gm13005 processed_pseudogene Interval_100928 chr2 173397862 173398270 + 0 NA Intergenic Intergenic 3500 ENSMUSG00000086114.1 ENSMUSG00000086114 ENSMUST00000147357 Gm14642 lincRNA Interval_173592 chrX 100480450 100480807 + 0 NA Intergenic Intergenic -13727 ENSMUSG00000031221.7 ENSMUSG00000031221 ENSMUST00000144881 Igbp1 protein_coding Interval_59352 chr15 51829816 51830120 + 0 NA intron (ENSMUSG00000022312.11, intron 2 of 2) protein_coding-intron (ENSMUSG00000022312.11, intron 2 of 7) 6289 ENSMUSG00000022312.11 ENSMUSG00000022312 ENSMUST00000228583 Eif3h protein_coding Interval_160228 chr8 107277361 107277724 + 0 NA Intergenic Intergenic -14294 ENSMUSG00000057657.4 ENSMUSG00000057657 ENSMUST00000080443 Rps18-ps3 processed_pseudogene Interval_88183 chr19 60417432 60418227 + 0 NA Intergenic Intergenic 50475 ENSMUSG00000045052.3 ENSMUSG00000045052 ENSMUST00000051277 Prlhr protein_coding Interval_167081 chr9 65127990 65129269 + 0 NA exon (ENSMUSG00000032816.15, exon 11 of 20) protein_coding-exon (ENSMUSG00000032816.15, exon 11 of 20) -12583 ENSMUSG00000032394.6 ENSMUSG00000032394 ENSMUST00000217135 Igdcc3 protein_coding Interval_4087 chr1 67933804 67936749 + 0 NA Intergenic Intergenic 32046 ENSMUSG00000104395.1 ENSMUSG00000104395 ENSMUST00000192182 Gm37957 TEC Interval_144090 chr7 19381605 19382526 + 0 NA promoter-TSS (ENSMUSG00000030400.17) protein_coding-promoter-TSS (ENSMUSG00000030400.17) -4578 ENSMUSG00000076315.2 ENSMUSG00000076315 ENSMUST00000102360 Mir343 miRNA Interval_53959 chr14 63818920 63819346 + 0 NA exon (ENSMUSG00000035067.9, exon 3 of 3) protein_coding-exon (ENSMUSG00000035067.9, exon 3 of 3) -80636 ENSMUSG00000021958.5 ENSMUSG00000021958 ENSMUST00000225564 Pinx1 protein_coding Interval_3451 chr1 58457200 58458749 + 0 NA TTS (ENSMUSG00000026036.17) protein_coding-TTS (ENSMUSG00000026036.17) 289 ENSMUSG00000026036.17 ENSMUSG00000026036 ENSMUST00000188295 Nif3l1 protein_coding Interval_31374 chr11 100307562 100309291 + 0 NA Intergenic Intergenic -12282 ENSMUSG00000035530.13 ENSMUSG00000035530 ENSMUST00000132618 Eif1 protein_coding Interval_19195 chr10 95433207 95433615 + 0 NA Intergenic Intergenic 16036 ENSMUSG00000097766.1 ENSMUSG00000097766 ENSMUST00000181781 5730420D15Rik bidirectional_promoter_lncRNA Interval_42112 chr13 8921896 8922141 + 0 NA promoter-TSS (ENSMUSG00000076030.1) miRNA-promoter-TSS (ENSMUSG00000076030.1) -580 ENSMUSG00000076030.1 ENSMUSG00000076030 ENSMUST00000102076 Gm22750 miRNA Interval_151214 chr7 119750067 119750317 + 0 NA Intergenic Intergenic -2485 ENSMUSG00000108915.1 ENSMUSG00000108915 ENSMUST00000208096 Gm44966 processed_pseudogene Interval_1150 chr1 16159981 16160345 + 0 NA Intergenic Intergenic 29661 ENSMUSG00000025921.7 ENSMUSG00000025921 ENSMUST00000152626 Rdh10 protein_coding Interval_83757 chr19 4419628 4419860 + 0 NA Intergenic Intergenic -19579 ENSMUSG00000087132.8 ENSMUSG00000087132 ENSMUST00000136632 A930001C03Rik processed_transcript Interval_143383 chr7 6265483 6266414 + 0 NA intron (ENSMUSG00000053367.15, intron 2 of 10) protein_coding-intron (ENSMUSG00000053367.15, intron 6 of 15) 5412 ENSMUSG00000053367.15 ENSMUSG00000053367 ENSMUST00000155248 Epp13 protein_coding Interval_103714 chr3 51907587 51909523 + 0 NA exon (ENSMUSG00000103701.1, exon 1 of 2) TEC-exon (ENSMUSG00000103701.1, exon 1 of 2) 261 ENSMUSG00000103701.1 ENSMUSG00000103701 ENSMUST00000194292 Gm10728 TEC Interval_52726 chr14 49127100 49127410 + 0 NA Intergenic Intergenic -4553 ENSMUSG00000115737.1 ENSMUSG00000115737 ENSMUST00000227008 Rpl19-ps3 transcribed_processed_pseudogene Interval_81509 chr18 61276661 61277077 + 0 NA intron (ENSMUSG00000024575.16, intron 1 of 5) protein_coding-intron (ENSMUSG00000024575.16, intron 17 of 21) 1846 ENSMUSG00000024575.16 ENSMUSG00000024575 ENSMUST00000135688 Pde6a protein_coding Interval_88339 chr2 4129801 4130133 + 0 NA intron (ENSMUSG00000026657.17, intron 2 of 24) protein_coding-intron (ENSMUSG00000026657.17, intron 1 of 1) -7807 ENSMUSG00000086921.1 ENSMUSG00000086921 ENSMUST00000138462 Gm13189 lincRNA Interval_91637 chr2 45071494 45071792 + 0 NA intron (ENSMUSG00000026872.18, intron 2 of 3) protein_coding-intron (ENSMUSG00000026872.18, intron 2 of 9) -39278 ENSMUSG00000052248.16 ENSMUSG00000052248 ENSMUST00000231441 Zeb2os antisense Interval_58615 chr15 36592340 36593748 + 0 NA Intergenic Intergenic 9500 ENSMUSG00000105494.1 ENSMUSG00000105494 ENSMUST00000175424 Gm44310 miRNA Interval_116015 chr4 107002275 107003002 + 0 NA intron (ENSMUSG00000061887.14, intron 1 of 4) protein_coding-intron (ENSMUSG00000061887.14, intron 4 of 17) 19861 ENSMUSG00000085581.1 ENSMUSG00000085581 ENSMUST00000129617 Gm12786 antisense Interval_47493 chr13 85388457 85388991 + 0 NA Intergenic Intergenic 23195 ENSMUSG00000103196.1 ENSMUSG00000103196 ENSMUST00000193837 Gm37641 TEC Interval_27118 chr11 63061301 63061972 + 0 NA promoter-TSS (ENSMUSG00000042189.5) protein_coding-promoter-TSS (ENSMUSG00000042189.5) -18 ENSMUSG00000042189.5 ENSMUSG00000042189 ENSMUST00000035732 Tekt3 protein_coding Interval_112660 chr4 43906386 43906722 + 0 NA intron (ENSMUSG00000028476.13, intron 6 of 21) protein_coding-intron (ENSMUSG00000028476.13, intron 6 of 20) 1476 ENSMUSG00000099252.1 ENSMUSG00000099252 ENSMUST00000183559 Gm27265 misc_RNA Interval_39687 chr12 92303115 92303426 + 0 NA Intergenic Intergenic 83893 ENSMUSG00000114085.1 ENSMUSG00000114085 ENSMUST00000220602 Gm6841 processed_pseudogene Interval_30451 chr11 94456899 94457329 + 0 NA exon (ENSMUSG00000020866.17, exon 9 of 35) protein_coding-exon (ENSMUSG00000020866.17, exon 9 of 35) 16527 ENSMUSG00000020866.17 ENSMUSG00000020866 ENSMUST00000152811 Cacna1g protein_coding Interval_96654 chr2 126857661 126857995 + 0 NA intron (ENSMUSG00000027365.14, intron 2 of 13) protein_coding-intron (ENSMUSG00000027365.14, intron 2 of 38) -6675 ENSMUSG00000081894.1 ENSMUSG00000081894 ENSMUST00000122023 Gm14212 processed_pseudogene Interval_82425 chr18 73919450 73919759 + 0 NA Intergenic Intergenic 60217 ENSMUSG00000064036.15 ENSMUSG00000064036 ENSMUST00000134847 Mro protein_coding Interval_31396 chr11 100425601 100426448 + 0 NA intron (ENSMUSG00000017176.17, intron 8 of 8) protein_coding-intron (ENSMUSG00000017176.17, intron 9 of 9) 5600 ENSMUSG00000001555.10 ENSMUSG00000001555 ENSMUST00000125616 Fkbp10 protein_coding Interval_106856 chr3 101327152 101327915 + 0 NA Intergenic Intergenic 16687 ENSMUSG00000106316.1 ENSMUSG00000106316 ENSMUST00000197441 Gm43467 processed_pseudogene Interval_120085 chr4 141731877 141732305 + 0 NA Intergenic Intergenic -8672 ENSMUSG00000078515.4 ENSMUSG00000078515 ENSMUST00000177592 Ddi2 protein_coding Interval_77634 chr17 93390766 93391548 + 0 NA TTS (ENSMUSG00000117368.1) processed_pseudogene-TTS (ENSMUSG00000117368.1) 541 ENSMUSG00000117368.1 ENSMUSG00000117368 ENSMUST00000234726 Gm50001 processed_pseudogene Interval_36571 chr12 50621144 50621408 + 0 NA intron (ENSMUSG00000002688.8, intron 1 of 18) protein_coding-intron (ENSMUSG00000002688.8, intron 1 of 18) 27822 ENSMUSG00000002688.8 ENSMUSG00000002688 ENSMUST00000002765 Prkd1 protein_coding Interval_126984 chr5 99042372 99043143 + 0 NA intron (ENSMUSG00000105579.2, intron 8 of 8) lincRNA-intron (ENSMUSG00000105579.2, intron 8 of 8) -20535 ENSMUSG00000089659.2 ENSMUSG00000089659 ENSMUST00000160819 Gm3470 processed_pseudogene Interval_135270 chr6 37951457 37952191 + 0 NA intron (ENSMUSG00000029833.17, intron 2 of 2) protein_coding-intron (ENSMUSG00000029833.17, intron 11 of 18) 66787 ENSMUSG00000029830.15 ENSMUSG00000029830 ENSMUST00000040486 Svopl protein_coding Interval_7823 chr1 133917723 133918459 + 0 NA intron (ENSMUSG00000041577.5, intron 1 of 2) protein_coding-intron (ENSMUSG00000041577.5, intron 1 of 2) 3320 ENSMUSG00000041577.5 ENSMUSG00000041577 ENSMUST00000127583 Prelp protein_coding Interval_157174 chr8 66913740 66914686 + 0 NA intron (ENSMUSG00000110468.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000110468.1, intron 1 of 2) 4565 ENSMUSG00000077485.1 ENSMUSG00000077485 ENSMUST00000104297 Gm25275 snoRNA Interval_43354 chr13 29604465 29604653 + 0 NA intron (ENSMUSG00000006191.17, intron 9 of 10) protein_coding-intron (ENSMUSG00000006191.17, intron 9 of 15) -87105 ENSMUSG00000006191.17 ENSMUSG00000006191 ENSMUST00000129231 Cdkal1 protein_coding Interval_16405 chr10 62760669 62761092 + 0 NA promoter-TSS (ENSMUSG00000112173.1) processed_pseudogene-promoter-TSS (ENSMUSG00000112173.1) -531 ENSMUSG00000020074.7 ENSMUSG00000020074 ENSMUST00000218946 Ccar1 protein_coding Interval_18362 chr10 85215179 85215645 + 0 NA Intergenic Intergenic 50910 ENSMUSG00000111752.1 ENSMUSG00000111752 ENSMUST00000213881 Gm38575 processed_transcript Interval_33399 chr11 116351154 116351532 + 0 NA intron (ENSMUSG00000052949.14, intron 5 of 12) protein_coding-intron (ENSMUSG00000052949.14, intron 11 of 18) -3425 ENSMUSG00000052949.14 ENSMUSG00000052949 ENSMUST00000149682 Rnf157 protein_coding Interval_37444 chr12 68886372 68886812 + 0 NA Intergenic Intergenic -74295 ENSMUSG00000112933.1 ENSMUSG00000112933 ENSMUST00000223294 Gm47491 processed_pseudogene Interval_128937 chr5 116192653 116193315 + 0 NA intron (ENSMUSG00000043913.14, intron 2 of 5) protein_coding-intron (ENSMUSG00000043913.14, intron 2 of 13) -50722 ENSMUSG00000086122.1 ENSMUSG00000086122 ENSMUST00000156169 Gm14507 antisense Interval_154578 chr8 21008524 21008806 + 0 NA Intergenic Intergenic -16880 ENSMUSG00000074447.2 ENSMUSG00000074447 ENSMUST00000076754 Defa21 protein_coding Interval_160115 chr8 106541020 106541469 + 0 NA intron (ENSMUSG00000061048.8, intron 8 of 15) protein_coding-intron (ENSMUSG00000061048.8, intron 8 of 15) 30353 ENSMUSG00000061048.8 ENSMUSG00000061048 ENSMUST00000080797 Cdh3 protein_coding Interval_36589 chr12 50999480 51000256 + 0 NA intron (ENSMUSG00000112685.1, intron 2 of 5) lincRNA-intron (ENSMUSG00000112685.1, intron 2 of 5) 5005 ENSMUSG00000112685.1 ENSMUSG00000112685 ENSMUST00000218991 Gm40421 lincRNA Interval_124167 chr5 38788128 38788477 + 0 NA intron (ENSMUSG00000039315.15, intron 3 of 18) protein_coding-intron (ENSMUSG00000039315.15, intron 3 of 18) 52318 ENSMUSG00000079528.9 ENSMUSG00000079528 ENSMUST00000177682 Clnkos antisense Interval_114453 chr4 78377788 78378624 + 0 NA Intergenic Intergenic 144220 ENSMUSG00000082351.1 ENSMUSG00000082351 ENSMUST00000121163 Gm11260 processed_pseudogene Interval_124644 chr5 52775213 52775610 + 0 NA promoter-TSS (ENSMUSG00000029179.14) protein_coding-promoter-TSS (ENSMUSG00000029179.14) -7705 ENSMUSG00000029179.14 ENSMUSG00000029179 ENSMUST00000143745 Zcchc4 protein_coding Interval_147265 chr7 65282737 65283154 + 0 NA Intergenic Intergenic -69576 ENSMUSG00000108587.1 ENSMUSG00000108587 ENSMUST00000205499 1810049I09Rik lincRNA Interval_59042 chr15 41973344 41973901 + 0 NA Intergenic Intergenic 24625 ENSMUSG00000088469.1 ENSMUSG00000088469 ENSMUST00000157844 Gm24751 snoRNA Interval_13634 chr10 20311781 20313349 + 0 NA promoter-TSS (ENSMUSG00000037608.16) protein_coding-promoter-TSS (ENSMUSG00000037608.16) 33 ENSMUSG00000037608.16 ENSMUSG00000037608 ENSMUST00000188546 Bclaf1 protein_coding Interval_148969 chr7 90513054 90513357 + 0 NA intron (ENSMUSG00000052572.19, intron 3 of 27) protein_coding-intron (ENSMUSG00000052572.19, intron 2 of 2) -37210 ENSMUSG00000030614.8 ENSMUSG00000030614 ENSMUST00000123622 Tmem126b protein_coding Interval_18602 chr10 88356102 88358050 + 0 NA promoter-TSS (ENSMUSG00000020057.2) protein_coding-promoter-TSS (ENSMUSG00000020057.2) -80 ENSMUSG00000020057.2 ENSMUSG00000020057 ENSMUST00000138159 Dram1 protein_coding Interval_146920 chr7 55865276 55866099 + 0 NA intron (ENSMUSG00000030447.15, intron 2 of 31) protein_coding-intron (ENSMUSG00000030447.15, intron 1 of 30) -6172 ENSMUSG00000030447.15 ENSMUSG00000030447 ENSMUST00000205656 Cyfip1 protein_coding Interval_71302 chr17 22028844 22029241 + 0 NA intron (ENSMUSG00000053347.15, intron 5 of 5) protein_coding-intron (ENSMUSG00000053347.15, intron 5 of 5) 11497 ENSMUSG00000092147.1 ENSMUSG00000092147 ENSMUST00000167568 Gm7052 unprocessed_pseudogene Interval_126148 chr5 79280087 79280302 + 0 NA Intergenic Intergenic -160003 ENSMUSG00000107308.1 ENSMUSG00000107308 ENSMUST00000200713 Gm43234 processed_pseudogene Interval_89400 chr2 20448859 20449337 + 0 NA intron (ENSMUSG00000036617.17, intron 2 of 3) protein_coding-intron (ENSMUSG00000036617.17, intron 3 of 7) -16164 ENSMUSG00000085477.7 ENSMUSG00000085477 ENSMUST00000149398 Gm13335 antisense Interval_33992 chr11 119889878 119890476 + 0 NA intron (ENSMUSG00000025583.15, intron 26 of 32) protein_coding-intron (ENSMUSG00000025583.15, intron 27 of 33) -23838 ENSMUSG00000025371.12 ENSMUSG00000025371 ENSMUST00000137055 Chmp6 protein_coding Interval_25519 chr11 49498867 49499192 + 0 NA Intergenic Intergenic -7695 ENSMUSG00000044170.5 ENSMUSG00000044170 ENSMUST00000060434 Olfr1384 protein_coding Interval_56869 chr14 122606679 122607271 + 0 NA intron (ENSMUSG00000041650.15, intron 1 of 5) protein_coding-intron (ENSMUSG00000041650.15, intron 6 of 23) 3138 ENSMUSG00000115256.1 ENSMUSG00000115256 ENSMUST00000227639 Gm49259 processed_pseudogene Interval_125109 chr5 64571728 64572020 + 0 NA Intergenic Intergenic -7055 ENSMUSG00000104806.1 ENSMUSG00000104806 ENSMUST00000197120 Gm42566 TEC Interval_74640 chr17 54077584 54077787 + 0 NA Intergenic Intergenic 75313 ENSMUSG00000104810.1 ENSMUSG00000104810 ENSMUST00000198419 Gm5684 processed_pseudogene Interval_122880 chr5 26786883 26787634 + 0 NA Intergenic Intergenic 41247 ENSMUSG00000104733.1 ENSMUSG00000104733 ENSMUST00000196217 Gm29784 processed_pseudogene Interval_121241 chr4 154317062 154317929 + 0 NA exon (ENSMUSG00000039410.16, exon 17 of 17) protein_coding-exon (ENSMUSG00000039410.16, exon 17 of 17) -15832 ENSMUSG00000029032.12 ENSMUSG00000029032 ENSMUST00000152947 Arhgef16 protein_coding Interval_39350 chr12 86855018 86856446 + 0 NA Intergenic Intergenic -9265 ENSMUSG00000113555.1 ENSMUSG00000113555 ENSMUST00000222765 Gm10095 processed_pseudogene Interval_113539 chr4 56014880 56015136 + 0 NA Intergenic Intergenic -21269 ENSMUSG00000085643.1 ENSMUSG00000085643 ENSMUST00000134099 Gm12519 lincRNA Interval_49364 chr13 111473305 111474338 + 0 NA intron (ENSMUSG00000116016.1, intron 1 of 7) protein_coding-intron (ENSMUSG00000032745.18, intron 2 of 12) -20398 ENSMUSG00000032745.18 ENSMUSG00000032745 ENSMUST00000129638 Gpbp1 protein_coding Interval_152425 chr7 132981347 132983696 + 0 NA intron (ENSMUSG00000030967.15, intron 8 of 9) protein_coding-intron (ENSMUSG00000030967.15, intron 7 of 8) 1031 ENSMUSG00000085663.1 ENSMUSG00000085663 ENSMUST00000131085 Gm15718 antisense Interval_173823 chrX 105120112 105121869 + 0 NA exon (ENSMUSG00000031227.8, exon 1 of 1) protein_coding-exon (ENSMUSG00000031227.8, exon 1 of 1) 612 ENSMUSG00000031227.8 ENSMUSG00000031227 ENSMUST00000033578 Magee1 protein_coding Interval_25037 chr11 43433272 43434315 + 0 NA promoter-TSS (ENSMUSG00000020409.10) protein_coding-promoter-TSS (ENSMUSG00000020409.10) -3550 ENSMUSG00000020409.10 ENSMUSG00000020409 ENSMUST00000136541 Slu7 protein_coding Interval_70359 chr17 8969492 8970510 + 0 NA intron (ENSMUSG00000023868.17, intron 16 of 19) protein_coding-intron (ENSMUSG00000023868.17, intron 18 of 21) -18341 ENSMUSG00000023873.13 ENSMUSG00000023873 ENSMUST00000136954 1700010I14Rik protein_coding Interval_34019 chr11 120056576 120056768 + 0 NA Intergenic Intergenic -2429 ENSMUSG00000113114.1 ENSMUSG00000113114 ENSMUST00000223151 Gm47846 unitary_pseudogene Interval_25408 chr11 47658042 47658806 + 0 NA intron (ENSMUSG00000020354.15, intron 1 of 2) protein_coding-intron (ENSMUSG00000020354.15, intron 1 of 2) -20955 ENSMUSG00000020354.15 ENSMUSG00000020354 ENSMUST00000128558 Sgcd protein_coding Interval_3378 chr1 57611824 57613501 + 0 NA Intergenic Intergenic -48611 ENSMUSG00000101151.1 ENSMUSG00000101151 ENSMUST00000186851 Gm17929 processed_pseudogene Interval_4728 chr1 77930421 77931089 + 0 NA Intergenic Intergenic -32309 ENSMUSG00000065215.1 ENSMUSG00000065215 ENSMUST00000083281 Gm26263 snRNA Interval_23698 chr11 24727526 24728385 + 0 NA intron (ENSMUSG00000073103.2, intron 1 of 2) lincRNA-intron (ENSMUSG00000073103.2, intron 1 of 2) 2767 ENSMUSG00000073103.2 ENSMUSG00000073103 ENSMUST00000101450 Gm10466 lincRNA Interval_39837 chr12 98920115 98921033 + 0 NA promoter-TSS (ENSMUSG00000021013.16) protein_coding-promoter-TSS (ENSMUSG00000021013.16) -19090 ENSMUSG00000051166.10 ENSMUSG00000051166 ENSMUST00000222128 Eml5 protein_coding Interval_140455 chr6 118345495 118345804 + 0 NA Intergenic Intergenic -37265 ENSMUSG00000107933.1 ENSMUSG00000107933 ENSMUST00000204033 Gm30498 lincRNA Interval_138296 chr6 87016345 87017242 + 0 NA intron (ENSMUSG00000029993.16, intron 4 of 6) protein_coding-intron (ENSMUSG00000029993.16, intron 3 of 7) 6913 ENSMUSG00000029993.16 ENSMUSG00000029993 ENSMUST00000204103 Nfu1 protein_coding Interval_79517 chr18 32652536 32653175 + 0 NA Intergenic Intergenic -30799 ENSMUSG00000087715.1 ENSMUSG00000087715 ENSMUST00000157090 Gm25826 snoRNA Interval_20625 chr10 119663687 119664005 + 0 NA intron (ENSMUSG00000034813.18, intron 1 of 21) protein_coding-intron (ENSMUSG00000034813.18, intron 1 of 22) 9782 ENSMUSG00000112106.1 ENSMUSG00000112106 ENSMUST00000218068 Gm47026 TEC Interval_117003 chr4 118918904 118919294 + 0 NA Intergenic Intergenic -1634 ENSMUSG00000096705.1 ENSMUSG00000096705 ENSMUST00000071979 Olfr1329 protein_coding Interval_53142 chr14 54692675 54692911 + 0 NA exon (ENSMUSG00000114865.2, exon 14 of 14) protein_coding-exon (ENSMUSG00000114865.2, exon 14 of 14) 6007 ENSMUSG00000114865.2 ENSMUSG00000114865 ENSMUST00000227947 Gm29776 protein_coding Interval_124964 chr5 62377028 62377299 + 0 NA Intergenic Intergenic -51556 ENSMUSG00000105285.1 ENSMUSG00000105285 ENSMUST00000196463 Gm43238 TEC Interval_167278 chr9 66996128 66997187 + 0 NA Intergenic Intergenic -15472 ENSMUSG00000089450.1 ENSMUSG00000089450 ENSMUST00000158825 Gm24225 snRNA Interval_123738 chr5 35042845 35043919 + 0 NA promoter-TSS (ENSMUSG00000029102.9) protein_coding-promoter-TSS (ENSMUSG00000029102.9) -967 ENSMUSG00000029102.9 ENSMUSG00000029102 ENSMUST00000202168 Hgfac protein_coding Interval_85181 chr19 23466889 23468831 + 0 NA Intergenic Intergenic -19418 ENSMUSG00000033207.7 ENSMUSG00000033207 ENSMUST00000236349 Mamdc2 protein_coding Interval_115864 chr4 105301300 105302815 + 0 NA Intergenic Intergenic 72889 ENSMUSG00000081819.1 ENSMUSG00000081819 ENSMUST00000118507 Gm12722 processed_pseudogene Interval_58500 chr15 35258678 35259123 + 0 NA intron (ENSMUSG00000115345.1, intron 3 of 4) lincRNA-intron (ENSMUSG00000115345.1, intron 3 of 4) -37211 ENSMUSG00000022330.5 ENSMUSG00000022330 ENSMUST00000228152 Osr2 protein_coding Interval_41012 chr12 110590768 110592311 + 0 NA exon (ENSMUSG00000113361.1, exon 1 of 1) lincRNA-exon (ENSMUSG00000113361.1, exon 1 of 1) 1027 ENSMUSG00000113361.1 ENSMUSG00000113361 ENSMUST00000221143 B930059L03Rik lincRNA Interval_171621 chr9 119597089 119597846 + 0 NA Intergenic Intergenic -33964 ENSMUSG00000032511.17 ENSMUSG00000032511 ENSMUST00000138934 Scn5a protein_coding Interval_11863 chr1 186546994 186547467 + 0 NA intron (ENSMUSG00000103690.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000103690.1, intron 1 of 1) 11451 ENSMUSG00000103690.1 ENSMUSG00000103690 ENSMUST00000195454 A730004F24Rik lincRNA Interval_77183 chr17 87178777 87181052 + 0 NA Intergenic Intergenic 4311 ENSMUSG00000095035.1 ENSMUSG00000095035 ENSMUST00000116918 Gm22346 miRNA Interval_99699 chr2 164386189 164387323 + 0 NA intron (ENSMUSG00000017002.14, intron 1 of 2) protein_coding-intron (ENSMUSG00000017002.14, intron 1 of 2) 2339 ENSMUSG00000017002.14 ENSMUSG00000017002 ENSMUST00000167427 Slpi protein_coding Interval_169858 chr9 102538081 102538303 + 0 NA intron (ENSMUSG00000035606.8, intron 9 of 10) protein_coding-intron (ENSMUSG00000035606.8, intron 9 of 10) -9574 ENSMUSG00000088324.1 ENSMUSG00000088324 ENSMUST00000157699 Gm25669 rRNA Interval_28854 chr11 78791615 78792438 + 0 NA Intergenic Intergenic -32361 ENSMUSG00000088748.1 ENSMUSG00000088748 ENSMUST00000158123 Gm23219 snRNA Interval_2108 chr1 36482197 36482502 + 0 NA intron (ENSMUSG00000037408.10, intron 1 of 6) protein_coding-intron (ENSMUSG00000037408.10, intron 1 of 6) 8397 ENSMUSG00000104316.1 ENSMUSG00000104316 ENSMUST00000193157 Gm37909 TEC Interval_21897 chr11 5054243 5054954 + 0 NA TTS (ENSMUSG00000034201.13) protein_coding-TTS (ENSMUSG00000034201.13) -4368 ENSMUSG00000034209.4 ENSMUSG00000034209 ENSMUST00000126974 Rasl10a protein_coding Interval_172621 chrX 38479974 38480247 + 0 NA exon (ENSMUSG00000087390.1, exon 2 of 2) lincRNA-exon (ENSMUSG00000087390.1, exon 2 of 2) 3649 ENSMUSG00000087390.1 ENSMUSG00000087390 ENSMUST00000130251 Gm7598 lincRNA Interval_8119 chr1 135818342 135819294 + 0 NA exon (ENSMUSG00000041782.14, exon 1 of 10) protein_coding-exon (ENSMUSG00000041782.14, exon 1 of 10) -11177 ENSMUSG00000041782.14 ENSMUSG00000041782 ENSMUST00000185756 Lad1 protein_coding Interval_147146 chr7 63855222 63855592 + 0 NA Intergenic Intergenic 28429 ENSMUSG00000108629.1 ENSMUSG00000108629 ENSMUST00000206076 Gm44720 processed_pseudogene Interval_157936 chr8 76777526 76777848 + 0 NA intron (ENSMUSG00000074235.4, intron 1 of 1) bidirectional_promoter_lncRNA-intron (ENSMUSG00000074235.4, intron 1 of 1) 85361 ENSMUSG00000087321.1 ENSMUSG00000087321 ENSMUST00000139800 Gm5353 processed_pseudogene Interval_159307 chr8 93140664 93141563 + 0 NA TTS (ENSMUSG00000110714.1) unprocessed_pseudogene-TTS (ENSMUSG00000110714.1) -9830 ENSMUSG00000057400.14 ENSMUSG00000057400 ENSMUST00000211843 Ces1c protein_coding Interval_56930 chr14 123585201 123585490 + 0 NA intron (ENSMUSG00000000197.8, intron 6 of 29) protein_coding-intron (ENSMUSG00000000197.8, intron 6 of 43) 41799 ENSMUSG00000000197.8 ENSMUSG00000000197 ENSMUST00000228766 Nalcn protein_coding Interval_59530 chr15 55071578 55072594 + 0 NA promoter-TSS (ENSMUSG00000037343.8) protein_coding-promoter-TSS (ENSMUSG00000037343.8) -12475 ENSMUSG00000115657.1 ENSMUSG00000115657 ENSMUST00000228250 Gm41325 antisense Interval_76541 chr17 80885608 80886387 + 0 NA Intergenic Intergenic -10796 ENSMUSG00000112121.1 ENSMUSG00000112121 ENSMUST00000220067 C230072F16Rik lincRNA Interval_87336 chr19 47794731 47796288 + 0 NA intron (ENSMUSG00000044948.17, intron 4 of 4) protein_coding-intron (ENSMUSG00000044948.17, intron 11 of 13) -31929 ENSMUSG00000044948.17 ENSMUSG00000044948 ENSMUST00000159204 Cfap43 protein_coding Interval_158847 chr8 87217905 87218296 + 0 NA intron (ENSMUSG00000098257.1, intron 2 of 4) lincRNA-intron (ENSMUSG00000098257.1, intron 2 of 4) 15074 ENSMUSG00000098257.1 ENSMUSG00000098257 ENSMUST00000183344 Gm27169 lincRNA Interval_129456 chr5 120301847 120304455 + 0 NA Intergenic Intergenic 15425 ENSMUSG00000080412.1 ENSMUSG00000080412 ENSMUST00000116762 Gm26474 miRNA Interval_98887 chr2 155802585 155803710 + 0 NA intron (ENSMUSG00000027612.7, intron 4 of 8) protein_coding-intron (ENSMUSG00000027612.7, intron 4 of 8) -3877 ENSMUSG00000027612.7 ENSMUSG00000027612 ENSMUST00000135945 Mmp24 protein_coding Interval_58022 chr15 26364920 26365541 + 0 NA intron (ENSMUSG00000022269.13, intron 2 of 2) protein_coding-intron (ENSMUSG00000022269.13, intron 2 of 3) -22489 ENSMUSG00000022269.13 ENSMUSG00000022269 ENSMUST00000155819 Marchf11 protein_coding Interval_121402 chr4 155545367 155545600 + 0 NA intron (ENSMUSG00000029064.15, intron 6 of 8) protein_coding-intron (ENSMUSG00000029064.15, intron 7 of 11) 23021 ENSMUSG00000029064.15 ENSMUSG00000029064 ENSMUST00000176308 Gnb1 protein_coding Interval_154559 chr8 19499973 19501258 + 0 NA Intergenic Intergenic 5518 ENSMUSG00000037790.3 ENSMUSG00000037790 ENSMUST00000047851 Defb7 protein_coding Interval_87614 chr19 53740331 53742321 + 0 NA intron (ENSMUSG00000043639.15, intron 1 of 13) protein_coding-intron (ENSMUSG00000043639.15, intron 1 of 13) 26984 ENSMUSG00000089807.1 ENSMUSG00000089807 ENSMUST00000161107 Gm16298 processed_pseudogene Interval_111070 chr4 11615930 11617227 + 0 NA TTS (ENSMUSG00000078773.11) protein_coding-TTS (ENSMUSG00000078773.11) -1571 ENSMUSG00000086103.1 ENSMUSG00000086103 ENSMUST00000148576 Gm11832 antisense Interval_108658 chr3 129853529 129854148 + 0 NA intron (ENSMUSG00000058952.12, intron 3 of 13) protein_coding-intron (ENSMUSG00000058952.12, intron 3 of 13) 17954 ENSMUSG00000058952.12 ENSMUSG00000058952 ENSMUST00000077918 Cfi protein_coding Interval_165084 chr9 44477615 44480372 + 0 NA exon (ENSMUSG00000060380.3, exon 1 of 1) lincRNA-exon (ENSMUSG00000060380.3, exon 1 of 1) 766 ENSMUSG00000110980.1 ENSMUSG00000110980 ENSMUST00000216321 Gm47204 lincRNA Interval_169812 chr9 102066536 102066916 + 0 NA intron (ENSMUSG00000032537.15, intron 4 of 4) protein_coding-intron (ENSMUSG00000032537.15, intron 4 of 15) -10169 ENSMUSG00000104041.1 ENSMUSG00000104041 ENSMUST00000194763 Gm37562 TEC Interval_166527 chr9 60587190 60587422 + 0 NA TTS (ENSMUSG00000047766.15) protein_coding-TTS (ENSMUSG00000047766.15) 39111 ENSMUSG00000111512.1 ENSMUSG00000111512 ENSMUST00000215435 Gm17853 processed_pseudogene Interval_95131 chr2 104134198 104135065 + 0 NA Intergenic Intergenic 11862 ENSMUSG00000032671.5 ENSMUSG00000032671 ENSMUST00000040374 A930018P22Rik protein_coding Interval_156487 chr8 48684565 48685218 + 0 NA intron (ENSMUSG00000031561.16, intron 1 of 2) protein_coding-intron (ENSMUSG00000031561.16, intron 1 of 2) -53722 ENSMUSG00000110509.1 ENSMUSG00000110509 ENSMUST00000212961 Gm45772 processed_pseudogene Interval_1708 chr1 31840700 31840897 + 0 NA Intergenic Intergenic 104741 ENSMUSG00000082159.2 ENSMUSG00000082159 ENSMUST00000117896 Gm7910 processed_pseudogene Interval_143430 chr7 6751267 6751903 + 0 NA TTS (ENSMUSG00000051527.11) protein_coding-TTS (ENSMUSG00000051527.11) -1458 ENSMUSG00000109416.1 ENSMUSG00000109416 ENSMUST00000207613 Gm44863 TEC Interval_109080 chr3 135612264 135612846 + 0 NA intron (ENSMUSG00000028163.17, intron 11 of 24) protein_coding-intron (ENSMUSG00000028163.17, intron 11 of 24) -8696 ENSMUSG00000028163.17 ENSMUSG00000028163 ENSMUST00000196246 Nfkb1 protein_coding Interval_96860 chr2 129065390 129066863 + 0 NA promoter-TSS (ENSMUSG00000087151.1) processed_transcript-promoter-TSS (ENSMUSG00000087151.1) 141 ENSMUSG00000027394.13 ENSMUSG00000027394 ENSMUST00000144120 Ttl protein_coding Interval_112364 chr4 40844014 40844572 + 0 NA intron (ENSMUSG00000028413.13, intron 1 of 4) protein_coding-intron (ENSMUSG00000028413.13, intron 1 of 5) 5845 ENSMUSG00000096377.1 ENSMUSG00000096377 ENSMUST00000177794 Mir5123 miRNA Interval_159573 chr8 95539651 95539862 + 0 NA intron (ENSMUSG00000036598.4, intron 3 of 8) protein_coding-intron (ENSMUSG00000036598.4, intron 3 of 8) 5671 ENSMUSG00000036598.4 ENSMUSG00000036598 ENSMUST00000041569 Ccdc113 protein_coding Interval_161202 chr8 118523598 118525090 + 0 NA intron (ENSMUSG00000031841.19, intron 2 of 7) protein_coding-intron (ENSMUSG00000031841.19, intron 2 of 13) 86155 ENSMUSG00000110548.1 ENSMUSG00000110548 ENSMUST00000212267 Gm45721 antisense Interval_97058 chr2 130848937 130849461 + 0 NA intron (ENSMUSG00000027309.18, intron 1 of 3) protein_coding-intron (ENSMUSG00000027309.18, intron 1 of 3) -31667 ENSMUSG00000080989.1 ENSMUSG00000080989 ENSMUST00000121864 Gm14048 processed_pseudogene Interval_127069 chr5 100062278 100062604 + 0 NA intron (ENSMUSG00000029326.13, intron 1 of 1) protein_coding-intron (ENSMUSG00000029326.13, intron 4 of 6) 470 ENSMUSG00000029326.13 ENSMUSG00000029326 ENSMUST00000200223 Enoph1 protein_coding Interval_62103 chr15 86679274 86679604 + 0 NA Intergenic Intergenic -24852 ENSMUSG00000116040.1 ENSMUSG00000116040 ENSMUST00000229409 Gm49464 lincRNA Interval_27028 chr11 62450472 62451497 + 0 NA intron (ENSMUSG00000018501.17, intron 1 of 4) protein_coding-intron (ENSMUSG00000018501.17, intron 1 of 45) -7624 ENSMUSG00000014245.8 ENSMUSG00000014245 ENSMUST00000147918 Pigl protein_coding Interval_147573 chr7 68369153 68369990 + 0 NA Intergenic Intergenic -15208 ENSMUSG00000109458.1 ENSMUSG00000109458 ENSMUST00000207674 Gm44889 lincRNA Interval_142795 chr6 145755997 145756579 + 0 NA intron (ENSMUSG00000030259.12, intron 1 of 2) protein_coding-intron (ENSMUSG00000030259.12, intron 1 of 4) 5717 ENSMUSG00000030259.12 ENSMUSG00000030259 ENSMUST00000058538 Rassf8 protein_coding Interval_57529 chr15 12117301 12119112 + 0 NA intron (ENSMUSG00000022201.16, intron 1 of 4) protein_coding-intron (ENSMUSG00000022201.16, intron 1 of 19) 355 ENSMUSG00000022201.16 ENSMUSG00000022201 ENSMUST00000140787 Zfr protein_coding Interval_131105 chr5 135156651 135157292 + 0 NA intron (ENSMUSG00000005374.13, intron 4 of 6) protein_coding-intron (ENSMUSG00000005374.13, intron 3 of 5) 7280 ENSMUSG00000005374.13 ENSMUSG00000005374 ENSMUST00000152013 Tbl2 protein_coding Interval_53165 chr14 54843687 54843987 + 0 NA intron (ENSMUSG00000112858.2, intron 10 of 13) protein_coding-intron (ENSMUSG00000112858.2, intron 11 of 14) 13359 ENSMUSG00000057156.10 ENSMUSG00000057156 ENSMUST00000146642 Homez protein_coding Interval_132188 chr5 143194466 143194992 + 0 NA intron (ENSMUSG00000029586.9, intron 1 of 6) protein_coding-intron (ENSMUSG00000029586.9, intron 2 of 7) 603 ENSMUSG00000029586.9 ENSMUSG00000029586 ENSMUST00000197330 Spdye4b protein_coding Interval_105974 chr3 90381568 90382098 + 0 NA Intergenic Intergenic 7148 ENSMUSG00000027932.14 ENSMUSG00000027932 ENSMUST00000127064 Slc27a3 protein_coding Interval_70388 chr17 9668994 9669987 + 0 NA exon (ENSMUSG00000046173.3, exon 1 of 1) protein_coding-exon (ENSMUSG00000046173.3, exon 1 of 1) 227 ENSMUSG00000046173.3 ENSMUSG00000046173 ENSMUST00000057190 Pabpc6 protein_coding Interval_26587 chr11 59073233 59073882 + 0 NA exon (ENSMUSG00000061462.18, exon 36 of 90) protein_coding-exon (ENSMUSG00000061462.18, exon 36 of 90) 62818 ENSMUSG00000061462.18 ENSMUSG00000061462 ENSMUST00000133040 Obscn protein_coding Interval_73509 chr17 38385111 38385482 + 0 NA Intergenic Intergenic 5588 ENSMUSG00000117177.1 ENSMUSG00000117177 ENSMUST00000233489 Gm49810 unprocessed_pseudogene Interval_78165 chr18 9587382 9587708 + 0 NA Intergenic Intergenic -26769 ENSMUSG00000088996.2 ENSMUSG00000088996 ENSMUST00000158371 Gm22765 snoRNA Interval_17466 chr10 77064769 77065249 + 0 NA intron (ENSMUSG00000001435.15, intron 29 of 40) protein_coding-intron (ENSMUSG00000001435.15, intron 29 of 40) -5012 ENSMUSG00000001435.15 ENSMUSG00000001435 ENSMUST00000156009 Col18a1 protein_coding Interval_106985 chr3 102507168 102507833 + 0 NA intron (ENSMUSG00000027859.10, intron 1 of 2) protein_coding-intron (ENSMUSG00000027859.10, intron 1 of 2) 16158 ENSMUSG00000106121.1 ENSMUSG00000106121 ENSMUST00000197086 Gm42679 sense_intronic Interval_61013 chr15 78772557 78773779 + 0 NA exon (ENSMUSG00000018169.12, exon 1 of 8) protein_coding-exon (ENSMUSG00000018169.12, exon 1 of 8) -6004 ENSMUSG00000018169.12 ENSMUSG00000018169 ENSMUST00000128389 Mfng protein_coding Interval_22053 chr11 6016344 6017119 + 0 NA intron (ENSMUSG00000057897.14, intron 2 of 10) protein_coding-intron (ENSMUSG00000057897.14, intron 2 of 18) -32593 ENSMUSG00000057897.14 ENSMUSG00000057897 ENSMUST00000129098 Camk2b protein_coding Interval_1156 chr1 16228042 16228920 + 0 NA promoter-TSS (ENSMUSG00000100868.1) antisense-promoter-TSS (ENSMUSG00000100868.1) -25 ENSMUSG00000100868.1 ENSMUSG00000100868 ENSMUST00000186343 Gm28095 antisense Interval_56340 chr14 117851945 117853298 + 0 NA intron (ENSMUSG00000058571.11, intron 4 of 9) protein_coding-intron (ENSMUSG00000058571.11, intron 4 of 8) 101226 ENSMUSG00000098648.1 ENSMUSG00000098648 ENSMUST00000183564 Mir6239 miRNA Interval_15892 chr10 58932297 58932900 + 0 NA intron (ENSMUSG00000037990.18, intron 1 of 9) protein_coding-intron (ENSMUSG00000037990.18, intron 1 of 2) -32945 ENSMUSG00000098653.1 ENSMUSG00000098653 ENSMUST00000183751 Gm27672 miRNA Interval_129848 chr5 122733944 122734425 + 0 NA exon (ENSMUSG00000029471.13, exon 17 of 17) protein_coding-exon (ENSMUSG00000029471.13, exon 17 of 17) 26604 ENSMUSG00000029470.15 ENSMUSG00000029470 ENSMUST00000139712 P2rx4 protein_coding Interval_146350 chr7 45459229 45461444 + 0 NA promoter-TSS (ENSMUSG00000050708.16) protein_coding-promoter-TSS (ENSMUSG00000050708.16) 867 ENSMUSG00000110350.1 ENSMUSG00000110350 ENSMUST00000209541 Gm10252 TEC Interval_5552 chr1 89763596 89764552 + 0 NA intron (ENSMUSG00000055013.16, intron 11 of 16) protein_coding-intron (ENSMUSG00000055013.16, intron 11 of 17) -25089 ENSMUSG00000055013.16 ENSMUSG00000055013 ENSMUST00000212924 Agap1 protein_coding Interval_46164 chr13 62132290 62132470 + 0 NA intron (ENSMUSG00000074867.4, intron 1 of 3) protein_coding-intron (ENSMUSG00000074867.4, intron 1 of 3) 2480 ENSMUSG00000074867.4 ENSMUSG00000074867 ENSMUST00000221618 Zfp808 protein_coding Interval_96399 chr2 122194088 122194865 + 0 NA intron (ENSMUSG00000027229.5, intron 3 of 4) protein_coding-intron (ENSMUSG00000027229.5, intron 5 of 6) 8002 ENSMUSG00000027229.5 ENSMUSG00000027229 ENSMUST00000149861 Terb2 protein_coding Interval_134557 chr6 29529213 29529665 + 0 NA exon (ENSMUSG00000029771.12, exon 1 of 9) protein_coding-exon (ENSMUSG00000029771.12, exon 1 of 9) -11707 ENSMUSG00000029771.12 ENSMUSG00000029771 ENSMUST00000171527 Irf5 protein_coding Interval_6595 chr1 118003426 118004641 + 0 NA Intergenic Intergenic -6478 ENSMUSG00000100703.6 ENSMUSG00000100703 ENSMUST00000189292 Gm28358 transcribed_unprocessed_pseudogene Interval_59195 chr15 47561987 47562936 + 0 NA Intergenic Intergenic 42123 ENSMUSG00000115707.1 ENSMUSG00000115707 ENSMUST00000227023 Gm2267 processed_pseudogene Interval_48880 chr13 104254147 104254471 + 0 NA Intergenic Intergenic 18434 ENSMUSG00000021714.15 ENSMUSG00000021714 ENSMUST00000224098 Cenpk protein_coding Interval_74430 chr17 50346601 50346985 + 0 NA intron (ENSMUSG00000117222.1, intron 2 of 4) lincRNA-intron (ENSMUSG00000117222.1, intron 2 of 4) 7541 ENSMUSG00000117222.1 ENSMUSG00000117222 ENSMUST00000233175 Gm49906 lincRNA Interval_54049 chr14 64774220 64774461 + 0 NA intron (ENSMUSG00000060012.9, intron 31 of 39) protein_coding-intron (ENSMUSG00000060012.9, intron 31 of 39) 20422 ENSMUSG00000064442.1 ENSMUSG00000064442 ENSMUST00000082508 Gm26225 snoRNA Interval_109242 chr3 138197310 138197511 + 0 NA intron (ENSMUSG00000012042.9, intron 2 of 10) protein_coding-intron (ENSMUSG00000012042.9, intron 2 of 10) -24061 ENSMUSG00000055301.8 ENSMUSG00000055301 ENSMUST00000196133 Adh7 protein_coding Interval_138713 chr6 91347668 91348523 + 0 NA Intergenic Intergenic 17002 ENSMUSG00000030093.7 ENSMUSG00000030093 ENSMUST00000132936 Wnt7a protein_coding Interval_3537 chr1 59435207 59435579 + 0 NA Intergenic Intergenic 14109 ENSMUSG00000104502.1 ENSMUSG00000104502 ENSMUST00000195013 Gm37737 TEC Interval_139867 chr6 112133193 112134149 + 0 NA Intergenic Intergenic -45477 ENSMUSG00000107893.1 ENSMUSG00000107893 ENSMUST00000204195 Gm44192 TEC Interval_95952 chr2 118651742 118653080 + 0 NA Intergenic Intergenic -11351 ENSMUSG00000074923.10 ENSMUSG00000074923 ENSMUST00000132577 Pak6 protein_coding Interval_166279 chr9 57990416 57991057 + 0 NA Intergenic Intergenic -7305 ENSMUSG00000097604.1 ENSMUSG00000097604 ENSMUST00000181289 Gm17322 lincRNA Interval_170378 chr9 107562899 107563635 + 0 NA promoter-TSS (ENSMUSG00000010054.4) protein_coding-promoter-TSS (ENSMUSG00000010054.4) -103 ENSMUSG00000010054.4 ENSMUSG00000010054 ENSMUST00000193418 Tusc2 protein_coding Interval_122469 chr5 23234432 23234786 + 0 NA intron (ENSMUSG00000106379.1, intron 3 of 3) protein_coding-intron (ENSMUSG00000106379.1, intron 2 of 2) -10813 ENSMUSG00000104866.1 ENSMUSG00000104866 ENSMUST00000199085 Gm42948 antisense Interval_129329 chr5 119139255 119139776 + 0 NA Intergenic Intergenic 31281 ENSMUSG00000100573.1 ENSMUSG00000100573 ENSMUST00000190550 1700081H04Rik lincRNA Interval_7203 chr1 127789578 127789814 + 0 NA intron (ENSMUSG00000026349.14, intron 2 of 4) protein_coding-intron (ENSMUSG00000026349.14, intron 2 of 8) -6875 ENSMUSG00000026349.14 ENSMUSG00000026349 ENSMUST00000153359 Ccnt2 protein_coding Interval_57745 chr15 18203595 18204139 + 0 NA intron (ENSMUSG00000098150.2, intron 1 of 7) processed_transcript-intron (ENSMUSG00000098150.2, intron 1 of 7) 39986 ENSMUSG00000098222.2 ENSMUSG00000098222 ENSMUST00000182954 Gm8318 processed_pseudogene Interval_81423 chr18 60663913 60664332 + 0 NA Intergenic Intergenic -39860 ENSMUSG00000043079.17 ENSMUSG00000043079 ENSMUST00000139236 Synpo protein_coding Interval_122859 chr5 26378966 26380895 + 0 NA Intergenic Intergenic 24512 ENSMUSG00000105786.1 ENSMUSG00000105786 ENSMUST00000197623 Gm18957 processed_pseudogene Interval_111421 chr4 21482299 21482645 + 0 NA Intergenic Intergenic -143908 ENSMUSG00000083654.1 ENSMUSG00000083654 ENSMUST00000118187 Gm11875 processed_pseudogene Interval_3090 chr1 53182687 53182967 + 0 NA intron (ENSMUSG00000060715.9, intron 3 of 9) protein_coding-intron (ENSMUSG00000060715.9, intron 2 of 8) 4781 ENSMUSG00000060715.9 ENSMUSG00000060715 ENSMUST00000190748 1700019A02Rik protein_coding Interval_100082 chr2 166968514 166968885 + 0 NA intron (ENSMUSG00000039536.16, intron 1 of 11) protein_coding-intron (ENSMUSG00000039536.16, intron 1 of 11) -3983 ENSMUSG00000039536.16 ENSMUSG00000039536 ENSMUST00000130104 Stau1 protein_coding Interval_36686 chr12 52001358 52001830 + 0 NA intron (ENSMUSG00000020956.14, intron 2 of 3) protein_coding-intron (ENSMUSG00000020956.14, intron 2 of 2) 4907 ENSMUSG00000020956.14 ENSMUSG00000020956 ENSMUST00000021339 Dtd2 protein_coding Interval_48438 chr13 99028468 99029505 + 0 NA Intergenic Intergenic 5862 ENSMUSG00000114283.1 ENSMUSG00000114283 ENSMUST00000224351 Gm47057 processed_pseudogene Interval_162916 chr9 13061773 13062011 + 0 NA Intergenic Intergenic 43963 ENSMUSG00000111830.1 ENSMUSG00000111830 ENSMUST00000216694 4930568E12Rik lincRNA Interval_15510 chr10 50060191 50060606 + 0 NA Intergenic Intergenic -78517 ENSMUSG00000111142.1 ENSMUSG00000111142 ENSMUST00000214421 Gm48131 TEC Interval_127672 chr5 106469149 106471042 + 0 NA intron (ENSMUSG00000097018.2, intron 1 of 1) lincRNA-intron (ENSMUSG00000097018.2, intron 1 of 1) 912 ENSMUSG00000097018.2 ENSMUSG00000097018 ENSMUST00000180862 Gm26872 lincRNA Interval_144142 chr7 19621000 19622817 + 0 NA intron (ENSMUSG00000002983.17, intron 3 of 12) protein_coding-intron (ENSMUSG00000002983.17, intron 2 of 10) 7340 ENSMUSG00000002983.17 ENSMUSG00000002983 ENSMUST00000141586 Relb protein_coding Interval_65368 chr16 21936664 21939132 + 0 NA intron (ENSMUSG00000022856.9, intron 2 of 3) protein_coding-intron (ENSMUSG00000022856.9, intron 3 of 4) 9633 ENSMUSG00000022856.9 ENSMUSG00000022856 ENSMUST00000232635 Tmem41a protein_coding Interval_55463 chr14 87543016 87543264 + 0 NA intron (ENSMUSG00000022019.16, intron 1 of 1) protein_coding-intron (ENSMUSG00000022019.16, intron 13 of 13) 4041 ENSMUSG00000022019.16 ENSMUSG00000022019 ENSMUST00000227304 Tdrd3 protein_coding Interval_146735 chr7 49811318 49811955 + 0 NA intron (ENSMUSG00000030505.17, intron 10 of 11) protein_coding-intron (ENSMUSG00000030505.17, intron 10 of 15) -2566 ENSMUSG00000109154.1 ENSMUSG00000109154 ENSMUST00000208559 Gm44822 TEC Interval_52436 chr14 46387083 46388883 + 0 NA promoter-TSS (ENSMUSG00000021835.15) protein_coding-promoter-TSS (ENSMUSG00000021835.15) 430 ENSMUSG00000086746.2 ENSMUSG00000086746 ENSMUST00000228667 Gm15222 antisense Interval_98848 chr2 155556958 155557338 + 0 NA promoter-TSS (ENSMUSG00000086529.1) antisense-promoter-TSS (ENSMUSG00000086529.1) -218 ENSMUSG00000086529.1 ENSMUSG00000086529 ENSMUST00000148685 Acss2os antisense Interval_14518 chr10 34638458 34639003 + 0 NA Intergenic Intergenic 155198 ENSMUSG00000019779.15 ENSMUSG00000019779 ENSMUST00000215594 Frk protein_coding Interval_4000 chr1 66003762 66004195 + 0 NA Intergenic Intergenic 28947 ENSMUSG00000081623.1 ENSMUSG00000081623 ENSMUST00000119367 Gm8809 processed_pseudogene Interval_4168 chr1 71089939 71090281 + 0 NA intron (ENSMUSG00000026196.7, intron 1 of 10) protein_coding-intron (ENSMUSG00000026196.7, intron 1 of 10) 13036 ENSMUSG00000026196.7 ENSMUSG00000026196 ENSMUST00000027393 Bard1 protein_coding Interval_22694 chr11 13194286 13194494 + 0 NA Intergenic Intergenic 196724 ENSMUSG00000084055.1 ENSMUSG00000084055 ENSMUST00000117869 Gm12004 processed_pseudogene Interval_47411 chr13 83710092 83710977 + 0 NA Intergenic Intergenic 19048 ENSMUSG00000097265.1 ENSMUSG00000097265 ENSMUST00000181705 Gm26803 lincRNA Interval_125492 chr5 67628172 67629942 + 0 NA intron (ENSMUSG00000037685.15, intron 32 of 33) protein_coding-intron (ENSMUSG00000037685.15, intron 35 of 36) 2862 ENSMUSG00000094435.1 ENSMUSG00000094435 ENSMUST00000175410 Gm23617 miRNA Interval_76322 chr17 79051666 79053128 + 0 NA intron (ENSMUSG00000024084.8, intron 1 of 5) protein_coding-intron (ENSMUSG00000024084.8, intron 1 of 6) 209 ENSMUSG00000024084.8 ENSMUSG00000024084 ENSMUST00000233899 Qpct protein_coding Interval_45074 chr13 51868262 51868973 + 0 NA Intergenic Intergenic 21873 ENSMUSG00000021453.2 ENSMUSG00000021453 ENSMUST00000132480 Gadd45g protein_coding Interval_26579 chr11 59015137 59015760 + 0 NA exon (ENSMUSG00000061462.18, exon 89 of 90) protein_coding-exon (ENSMUSG00000061462.18, exon 89 of 90) 12538 ENSMUSG00000072902.4 ENSMUSG00000072902 ENSMUST00000101162 Gm10435 antisense Interval_97538 chr2 139493839 139495951 + 0 NA intron (ENSMUSG00000039092.9, intron 1 of 11) protein_coding-intron (ENSMUSG00000039092.9, intron 2 of 12) 982 ENSMUSG00000039092.9 ENSMUSG00000039092 ENSMUST00000047370 Sptlc3 protein_coding Interval_107193 chr3 104486885 104487137 + 0 NA intron (ENSMUSG00000032913.13, intron 8 of 17) protein_coding-intron (ENSMUSG00000032913.13, intron 8 of 17) -7138 ENSMUSG00000032913.13 ENSMUSG00000032913 ENSMUST00000198452 Lrig2 protein_coding Interval_37274 chr12 64380494 64380720 + 0 NA Intergenic Intergenic 94083 ENSMUSG00000043060.8 ENSMUSG00000043060 ENSMUST00000059833 Fscb protein_coding Interval_18903 chr10 92985810 92986039 + 0 NA intron (ENSMUSG00000020014.17, intron 26 of 67) protein_coding-intron (ENSMUSG00000020014.17, intron 26 of 66) 47038 ENSMUSG00000020014.17 ENSMUSG00000020014 ENSMUST00000171781 Cfap54 protein_coding Interval_16514 chr10 63294121 63294837 + 0 NA exon (ENSMUSG00000096991.1, exon 1 of 2) antisense-exon (ENSMUSG00000096991.1, exon 1 of 2) 1314 ENSMUSG00000096991.1 ENSMUSG00000096991 ENSMUST00000181342 Gm26789 antisense Interval_76347 chr17 79333015 79333862 + 0 NA TTS (ENSMUSG00000036533.9) protein_coding-TTS (ENSMUSG00000036533.9) 19569 ENSMUSG00000036533.9 ENSMUSG00000036533 ENSMUST00000233363 Cdc42ep3 protein_coding Interval_143408 chr7 6456602 6456830 + 0 NA exon (ENSMUSG00000048620.6, exon 1 of 2) protein_coding-exon (ENSMUSG00000048620.6, exon 1 of 2) 548 ENSMUSG00000048620.6 ENSMUSG00000048620 ENSMUST00000056120 Olfr1336 protein_coding Interval_94175 chr2 84865492 84866495 + 0 NA Intergenic Intergenic 20717 ENSMUSG00000050896.12 ENSMUSG00000050896 ENSMUST00000151759 Rtn4rl2 protein_coding Interval_47202 chr13 77951159 77951534 + 0 NA intron (ENSMUSG00000064138.14, intron 5 of 5) protein_coding-intron (ENSMUSG00000064138.14, intron 6 of 9) -73556 ENSMUSG00000093668.3 ENSMUSG00000093668 ENSMUST00000175955 Pou5f2 protein_coding Interval_110792 chr4 8432350 8433110 + 0 NA Intergenic Intergenic 21517 ENSMUSG00000103127.1 ENSMUSG00000103127 ENSMUST00000194755 Gm37386 TEC Interval_41607 chr12 116896613 116897378 + 0 NA intron (ENSMUSG00000056553.14, intron 10 of 22) protein_coding-intron (ENSMUSG00000056553.14, intron 10 of 22) -43893 ENSMUSG00000113795.1 ENSMUSG00000113795 ENSMUST00000220994 Gm48119 processed_pseudogene Interval_53786 chr14 61742855 61743352 + 0 NA Intergenic Intergenic 59593 ENSMUSG00000104187.1 ENSMUSG00000104187 ENSMUST00000194021 Gm37820 TEC Interval_100995 chr2 174041167 174041401 + 0 NA Intergenic Intergenic 5989 ENSMUSG00000082519.1 ENSMUSG00000082519 ENSMUST00000120334 Vamp7-ps processed_pseudogene Interval_105217 chr3 83938847 83939475 + 0 NA intron (ENSMUSG00000033767.14, intron 8 of 21) protein_coding-intron (ENSMUSG00000033767.14, intron 11 of 33) -31582 ENSMUSG00000033767.14 ENSMUSG00000033767 ENSMUST00000192811 Tmem131l protein_coding Interval_167004 chr9 64440082 64440872 + 0 NA intron (ENSMUSG00000036466.17, intron 1 of 24) protein_coding-intron (ENSMUSG00000036466.17, intron 1 of 24) 54851 ENSMUSG00000036466.17 ENSMUSG00000036466 ENSMUST00000153934 Megf11 protein_coding Interval_118025 chr4 128372728 128373193 + 0 NA intron (ENSMUSG00000028804.20, intron 15 of 70) protein_coding-intron (ENSMUSG00000028804.20, intron 15 of 24) 111916 ENSMUSG00000085717.1 ENSMUSG00000085717 ENSMUST00000131581 Hmgb4os antisense Interval_88229 chr19 60837476 60838127 + 0 NA TTS (ENSMUSG00000063698.9) protein_coding-TTS (ENSMUSG00000063698.9) -21985 ENSMUSG00000083036.1 ENSMUSG00000083036 ENSMUST00000121724 Gm15959 processed_pseudogene Interval_27378 chr11 67083914 67084418 + 0 NA exon (ENSMUSG00000020908.14, exon 7 of 40) protein_coding-exon (ENSMUSG00000020908.14, exon 7 of 40) 5866 ENSMUSG00000020908.14 ENSMUSG00000020908 ENSMUST00000165221 Myh3 protein_coding Interval_990 chr1 13659557 13661647 + 0 NA promoter-TSS (ENSMUSG00000025937.6) protein_coding-promoter-TSS (ENSMUSG00000025937.6) -8169 ENSMUSG00000067813.3 ENSMUSG00000067813 ENSMUST00000088542 Xkr9 protein_coding Interval_91805 chr2 49741674 49742187 + 0 NA intron (ENSMUSG00000026764.15, intron 18 of 25) protein_coding-intron (ENSMUSG00000026764.15, intron 18 of 25) 9319 ENSMUSG00000026764.15 ENSMUSG00000026764 ENSMUST00000132968 Kif5c protein_coding Interval_120869 chr4 151170215 151172413 + 0 NA intron (ENSMUSG00000014592.21, intron 6 of 24) protein_coding-intron (ENSMUSG00000014592.21, intron 6 of 23) 81744 ENSMUSG00000078491.2 ENSMUSG00000078491 ENSMUST00000105667 Gm13090 protein_coding Interval_154430 chr8 16275699 16276467 + 0 NA intron (ENSMUSG00000060924.15, intron 11 of 33) protein_coding-intron (ENSMUSG00000060924.15, intron 11 of 69) 50080 ENSMUSG00000085150.1 ENSMUSG00000085150 ENSMUST00000129158 Gm16346 antisense Interval_165356 chr9 46562067 46563072 + 0 NA promoter-TSS (ENSMUSG00000077383.1) snoRNA-promoter-TSS (ENSMUSG00000077383.1) -405 ENSMUSG00000077383.1 ENSMUSG00000077383 ENSMUST00000104195 Gm22659 snoRNA Interval_8376 chr1 138511222 138511550 + 0 NA intron (ENSMUSG00000026393.10, intron 7 of 9) protein_coding-intron (ENSMUSG00000026393.10, intron 7 of 7) -4229 ENSMUSG00000099510.2 ENSMUSG00000099510 ENSMUST00000188729 Gm28501 antisense Interval_97314 chr2 133614392 133615270 + 0 NA Intergenic Intergenic -30410 ENSMUSG00000064983.1 ENSMUSG00000064983 ENSMUST00000083049 Gm25258 snRNA Interval_10706 chr1 173377293 173377923 + 0 NA intron (ENSMUSG00000037860.15, intron 1 of 11) protein_coding-intron (ENSMUSG00000037860.15, intron 1 of 11) -9960 ENSMUSG00000005338.13 ENSMUSG00000005338 ENSMUST00000126963 Cadm3 protein_coding Interval_54312 chr14 67554868 67555121 + 0 NA Intergenic Intergenic -11856 ENSMUSG00000077647.1 ENSMUSG00000077647 ENSMUST00000104459 Gm24981 snoRNA Interval_165514 chr9 48925560 48925771 + 0 NA Intergenic Intergenic -14644 ENSMUSG00000032269.8 ENSMUSG00000032269 ENSMUST00000003826 Htr3a protein_coding Interval_11487 chr1 182150117 182150678 + 0 NA Intergenic Intergenic 14089 ENSMUSG00000091013.3 ENSMUSG00000091013 ENSMUST00000169123 Vmn1r1 protein_coding Interval_66182 chr16 32189350 32190450 + 0 NA Intergenic Intergenic 10077 ENSMUSG00000075269.5 ENSMUSG00000075269 ENSMUST00000099990 Bex6 protein_coding Interval_30635 chr11 95584792 95588099 + 0 NA intron (ENSMUSG00000000120.6, intron 1 of 5) protein_coding-intron (ENSMUSG00000000120.6, intron 1 of 5) 1290 ENSMUSG00000000120.6 ENSMUSG00000000120 ENSMUST00000000122 Ngfr protein_coding Interval_41661 chr12 117479770 117480773 + 0 NA Intergenic Intergenic -94071 ENSMUSG00000089482.1 ENSMUSG00000089482 ENSMUST00000158857 Gm24741 rRNA Interval_138300 chr6 87032407 87032654 + 0 NA Intergenic Intergenic -10320 ENSMUSG00000029992.14 ENSMUSG00000029992 ENSMUST00000146410 Gfpt1 protein_coding Interval_166624 chr9 61367096 61367816 + 0 NA Intergenic Intergenic 4171 ENSMUSG00000074256.3 ENSMUSG00000074256 ENSMUST00000187131 Gm10655 lincRNA Interval_64075 chr16 7249748 7250154 + 0 NA intron (ENSMUSG00000008658.16, intron 2 of 12) protein_coding-intron (ENSMUSG00000008658.16, intron 4 of 14) 56204 ENSMUSG00000008658.16 ENSMUSG00000008658 ENSMUST00000231031 Rbfox1 protein_coding Interval_72787 chr17 32182839 32183638 + 0 NA promoter-TSS (ENSMUSG00000117925.1) processed_pseudogene-promoter-TSS (ENSMUSG00000117925.1) 99 ENSMUSG00000117925.1 ENSMUSG00000117925 ENSMUST00000236191 Gm50127 processed_pseudogene Interval_18532 chr10 87036332 87036551 + 0 NA Intergenic Intergenic 36144 ENSMUSG00000089666.1 ENSMUSG00000089666 ENSMUST00000160532 Gm16269 processed_pseudogene Interval_110743 chr4 7929763 7930792 + 0 NA Intergenic Intergenic 109361 ENSMUSG00000094771.1 ENSMUSG00000094771 ENSMUST00000179446 Gm23860 snoRNA Interval_64191 chr16 8944626 8944838 + 0 NA promoter-TSS (ENSMUSG00000116525.1) lincRNA-promoter-TSS (ENSMUSG00000116525.1) -181 ENSMUSG00000116525.1 ENSMUSG00000116525 ENSMUST00000230927 Gm30371 lincRNA Interval_98630 chr2 153660579 153661262 + 0 NA intron (ENSMUSG00000027478.15, intron 2 of 23) protein_coding-intron (ENSMUSG00000027478.15, intron 2 of 23) -8450 ENSMUSG00000027478.15 ENSMUSG00000027478 ENSMUST00000140811 Dnmt3b protein_coding Interval_47183 chr13 77345726 77346000 + 0 NA intron (ENSMUSG00000071252.6, intron 19 of 19) protein_coding-intron (ENSMUSG00000071252.6, intron 19 of 19) 176485 ENSMUSG00000114256.1 ENSMUSG00000114256 ENSMUST00000225012 Gm29844 processed_pseudogene Interval_172468 chrX 20829053 20829298 + 0 NA intron (ENSMUSG00000001127.12, intron 1 of 16) protein_coding-intron (ENSMUSG00000001127.12, intron 1 of 16) -5361 ENSMUSG00000092838.1 ENSMUSG00000092838 ENSMUST00000175097 Gm24824 miRNA Interval_47704 chr13 91460223 91462248 + 0 NA promoter-TSS (ENSMUSG00000003992.15) protein_coding-promoter-TSS (ENSMUSG00000003992.15) 65 ENSMUSG00000003992.15 ENSMUSG00000003992 ENSMUST00000137658 Ssbp2 protein_coding Interval_9863 chr1 163387796 163388080 + 0 NA intron (ENSMUSG00000040124.5, intron 5 of 5) protein_coding-intron (ENSMUSG00000040124.5, intron 4 of 4) -14345 ENSMUSG00000088951.1 ENSMUSG00000088951 ENSMUST00000158326 Gm24940 snRNA Interval_75282 chr17 65674984 65675358 + 0 NA intron (ENSMUSG00000056515.9, intron 5 of 6) protein_coding-intron (ENSMUSG00000056515.9, intron 5 of 6) -13593 ENSMUSG00000117114.1 ENSMUSG00000117114 ENSMUST00000233942 Gm49867 processed_pseudogene Interval_56935 chr14 123658202 123658684 + 0 NA Intergenic Intergenic -1682 ENSMUSG00000032925.16 ENSMUSG00000032925 ENSMUST00000132026 Itgbl1 protein_coding Interval_167640 chr9 71467441 71467631 + 0 NA Intergenic Intergenic 18369 ENSMUSG00000032199.13 ENSMUSG00000032199 ENSMUST00000233263 Polr2m protein_coding Interval_64596 chr16 13575404 13575651 + 0 NA intron (ENSMUSG00000022685.9, intron 22 of 23) protein_coding-intron (ENSMUSG00000022685.9, intron 21 of 23) -43976 ENSMUSG00000077488.1 ENSMUSG00000077488 ENSMUST00000104300 Gm25276 snoRNA Interval_69859 chr16 97640650 97640867 + 0 NA Intergenic Intergenic -73421 ENSMUSG00000000385.8 ENSMUSG00000000385 ENSMUST00000232141 Tmprss2 protein_coding Interval_43027 chr13 23317177 23318313 + 0 NA intron (ENSMUSG00000087097.1, intron 2 of 3) antisense-intron (ENSMUSG00000087097.1, intron 2 of 3) 4220 ENSMUSG00000087097.1 ENSMUSG00000087097 ENSMUST00000122940 4930586N03Rik antisense Interval_6147 chr1 98055737 98055922 + 0 NA exon (ENSMUSG00000026335.16, exon 1 of 1) protein_coding-exon (ENSMUSG00000026335.16, exon 1 of 1) 2054 ENSMUSG00000026335.16 ENSMUSG00000026335 ENSMUST00000163007 Pam protein_coding Interval_64585 chr16 13507201 13507702 + 0 NA Intergenic Intergenic 12968 ENSMUSG00000099411.1 ENSMUSG00000099411 ENSMUST00000186717 2310015D24Rik lincRNA Interval_66358 chr16 33368586 33369276 + 0 NA Intergenic Intergenic 11744 ENSMUSG00000097318.2 ENSMUSG00000097318 ENSMUST00000180923 1700007L15Rik bidirectional_promoter_lncRNA Interval_141862 chr6 134976152 134976477 + 0 NA Intergenic Intergenic -5404 ENSMUSG00000090698.2 ENSMUSG00000090698 ENSMUST00000167323 Apold1 protein_coding Interval_103504 chr3 45375696 45376228 + 0 NA intron (ENSMUSG00000097040.6, intron 1 of 8) processed_transcript-intron (ENSMUSG00000097040.6, intron 1 of 8) -6671 ENSMUSG00000049100.15 ENSMUSG00000049100 ENSMUST00000195655 Pcdh10 protein_coding Interval_132535 chr5 145938943 145939129 + 0 NA Intergenic Intergenic -17016 ENSMUSG00000104805.1 ENSMUSG00000104805 ENSMUST00000197368 Gm43624 unprocessed_pseudogene Interval_132128 chr5 142865733 142866000 + 0 NA Intergenic Intergenic 7018 ENSMUSG00000066640.11 ENSMUSG00000066640 ENSMUST00000156725 Fbxl18 protein_coding Interval_87772 chr19 55763567 55764190 + 0 NA intron (ENSMUSG00000024985.20, intron 4 of 14) protein_coding-intron (ENSMUSG00000024985.20, intron 3 of 11) 21614 ENSMUSG00000024985.20 ENSMUSG00000024985 ENSMUST00000148666 Tcf7l2 protein_coding Interval_124100 chr5 38302157 38302661 + 0 NA intron (ENSMUSG00000051596.13, intron 5 of 5) protein_coding-intron (ENSMUSG00000051596.13, intron 7 of 7) 16386 ENSMUSG00000051596.13 ENSMUSG00000051596 ENSMUST00000187863 Otop1 protein_coding Interval_95042 chr2 103411500 103412012 + 0 NA promoter-TSS (ENSMUSG00000027186.15) protein_coding-promoter-TSS (ENSMUSG00000027186.15) 68 ENSMUSG00000027186.15 ENSMUSG00000027186 ENSMUST00000152055 Elf5 protein_coding Interval_130612 chr5 129196331 129197696 + 0 NA intron (ENSMUSG00000044017.16, intron 20 of 24) protein_coding-intron (ENSMUSG00000044017.16, intron 21 of 25) -68496 ENSMUSG00000060419.8 ENSMUSG00000060419 ENSMUST00000140155 Rps16-ps2 processed_pseudogene Interval_43525 chr13 32706855 32707150 + 0 NA intron (ENSMUSG00000044951.17, intron 14 of 14) protein_coding-intron (ENSMUSG00000044951.17, intron 11 of 11) -51200 ENSMUSG00000098788.1 ENSMUSG00000098788 ENSMUST00000183530 Gm27342 snRNA Interval_101381 chr2 180920016 180921526 + 0 NA promoter-TSS (ENSMUSG00000038848.14) protein_coding-promoter-TSS (ENSMUSG00000038848.14) -384 ENSMUSG00000038848.14 ENSMUSG00000038848 ENSMUST00000124666 Ythdf1 protein_coding Interval_91745 chr2 49082900 49083108 + 0 NA intron (ENSMUSG00000036792.12, intron 2 of 3) protein_coding-intron (ENSMUSG00000036792.12, intron 2 of 10) -102014 ENSMUSG00000080937.1 ENSMUSG00000080937 ENSMUST00000118659 Gm13510 processed_pseudogene Interval_170144 chr9 105524245 105525001 + 0 NA intron (ENSMUSG00000032570.17, intron 1 of 6) protein_coding-intron (ENSMUSG00000032570.17, intron 1 of 6) 2696 ENSMUSG00000032570.17 ENSMUSG00000032570 ENSMUST00000186495 Atp2c1 protein_coding Interval_169436 chr9 97295747 97296389 + 0 NA Intergenic Intergenic 6882 ENSMUSG00000104167.1 ENSMUSG00000104167 ENSMUST00000192385 A030012G06Rik TEC Interval_164875 chr9 42720126 42720785 + 0 NA intron (ENSMUSG00000032017.14, intron 3 of 20) protein_coding-intron (ENSMUSG00000032017.14, intron 1 of 18) 141674 ENSMUSG00000076355.2 ENSMUSG00000076355 ENSMUST00000102400 Gm27509 miRNA Interval_73021 chr17 34170680 34171165 + 0 NA Intergenic Intergenic 14077 ENSMUSG00000079547.4 ENSMUSG00000079547 ENSMUST00000174765 H2-DMb1 protein_coding Interval_69590 chr16 94469582 94470897 + 0 NA TTS (ENSMUSG00000040785.19) protein_coding-TTS (ENSMUSG00000040785.19) -18538 ENSMUSG00000116589.1 ENSMUSG00000116589 ENSMUST00000210205 Gm31323 antisense Interval_174664 chrX 162727046 162728667 + 0 NA Intergenic Intergenic 8757 ENSMUSG00000086034.1 ENSMUSG00000086034 ENSMUST00000136472 Gm15201 processed_transcript Interval_162359 chr8 127397306 127397860 + 0 NA intron (ENSMUSG00000025812.18, intron 14 of 15) protein_coding-intron (ENSMUSG00000025812.18, intron 14 of 23) -163852 ENSMUSG00000090074.1 ENSMUSG00000090074 ENSMUST00000161478 Gm6921 processed_pseudogene Interval_123690 chr5 34538250 34538901 + 0 NA intron (ENSMUSG00000054520.15, intron 2 of 2) protein_coding-intron (ENSMUSG00000054520.15, intron 1 of 12) 7926 ENSMUSG00000088332.1 ENSMUSG00000088332 ENSMUST00000157707 Gm22847 snRNA Interval_63465 chr15 101237000 101237229 + 0 NA Intergenic Intergenic -11928 ENSMUSG00000097915.2 ENSMUSG00000097915 ENSMUST00000229239 A330009N23Rik antisense Interval_168243 chr9 78148331 78148736 + 0 NA intron (ENSMUSG00000009828.15, intron 5 of 13) protein_coding-intron (ENSMUSG00000009828.15, intron 5 of 13) 27100 ENSMUSG00000065037.1 ENSMUSG00000065037 ENSMUST00000083103 Rn7sk misc_RNA Interval_5221 chr1 86531593 86532853 + 0 NA Intergenic Intergenic 5486 ENSMUSG00000026238.14 ENSMUSG00000026238 ENSMUST00000188533 Ptma protein_coding Interval_157822 chr8 74327303 74328876 + 0 NA Intergenic Intergenic 57842 ENSMUSG00000098378.1 ENSMUSG00000098378 ENSMUST00000183704 Gm27864 miRNA Interval_74533 chr17 53079167 53079923 + 0 NA Intergenic Intergenic -116906 ENSMUSG00000117244.1 ENSMUSG00000117244 ENSMUST00000233156 Gm9210 processed_pseudogene Interval_127747 chr5 107296193 107297350 + 0 NA Intergenic Intergenic -6175 ENSMUSG00000088429.1 ENSMUSG00000088429 ENSMUST00000157804 Gm22557 snRNA Interval_40702 chr12 107627491 107627879 + 0 NA Intergenic Intergenic 14685 ENSMUSG00000079359.2 ENSMUSG00000079359 ENSMUST00000165520 Gm9006 processed_pseudogene Interval_134519 chr6 29299912 29301079 + 0 NA Intergenic Intergenic -18645 ENSMUSG00000039742.15 ENSMUSG00000039742 ENSMUST00000166462 Fam71f1 protein_coding Interval_12429 chr1 193382223 193383317 + 0 NA Intergenic Intergenic -12545 ENSMUSG00000016179.11 ENSMUSG00000016179 ENSMUST00000165718 Camk1g protein_coding Interval_59151 chr15 44948782 44949648 + 0 NA TTS (ENSMUSG00000089589.1) snoRNA-TTS (ENSMUSG00000089589.1) 1111 ENSMUSG00000089589.1 ENSMUSG00000089589 ENSMUST00000158964 Gm23343 snoRNA Interval_10830 chr1 175765394 175767037 + 0 NA promoter-TSS (ENSMUSG00000026523.14) protein_coding-promoter-TSS (ENSMUSG00000026523.14) -34299 ENSMUSG00000077794.1 ENSMUSG00000077794 ENSMUST00000104606 Gm25560 snRNA Interval_6083 chr1 96538039 96538229 + 0 NA Intergenic Intergenic 18569 ENSMUSG00000100336.1 ENSMUSG00000100336 ENSMUST00000187961 Gm29601 lincRNA Interval_126162 chr5 80667648 80668062 + 0 NA Intergenic Intergenic -225799 ENSMUSG00000065235.1 ENSMUSG00000065235 ENSMUST00000083301 Gm22974 snRNA Interval_68712 chr16 84919378 84919667 + 0 NA Intergenic Intergenic -25690 ENSMUSG00000116668.1 ENSMUSG00000116668 ENSMUST00000231785 Gm49568 processed_pseudogene Interval_728 chr1 10211259 10212397 + 0 NA intron (ENSMUSG00000067851.11, intron 2 of 2) protein_coding-intron (ENSMUSG00000067851.11, intron 5 of 37) -13026 ENSMUSG00000102556.1 ENSMUSG00000102556 ENSMUST00000192111 Gm37569 TEC Interval_164754 chr9 41126608 41126826 + 0 NA intron (ENSMUSG00000032020.15, intron 1 of 3) protein_coding-intron (ENSMUSG00000032020.15, intron 1 of 13) -14636 ENSMUSG00000110914.1 ENSMUSG00000110914 ENSMUST00000217288 Gm48611 TEC Interval_113576 chr4 56796304 56796506 + 0 NA intron (ENSMUSG00000028431.11, intron 4 of 36) protein_coding-intron (ENSMUSG00000028431.11, intron 4 of 36) -5940 ENSMUSG00000038827.11 ENSMUSG00000038827 ENSMUST00000147763 Abitram protein_coding Interval_11444 chr1 181959506 181960620 + 0 NA intron (ENSMUSG00000022995.16, intron 2 of 13) protein_coding-intron (ENSMUSG00000022995.16, intron 2 of 14) -3551 ENSMUSG00000022995.16 ENSMUSG00000022995 ENSMUST00000192497 Enah protein_coding Interval_61697 chr15 83463842 83465314 + 0 NA promoter-TSS (ENSMUSG00000016664.16) protein_coding-promoter-TSS (ENSMUSG00000016664.16) 46215 ENSMUSG00000022442.16 ENSMUSG00000022442 ENSMUST00000154401 Ttll1 protein_coding Interval_13155 chr10 12588021 12588313 + 0 NA intron (ENSMUSG00000019820.11, intron 51 of 74) protein_coding-intron (ENSMUSG00000019820.11, intron 50 of 73) 100695 ENSMUSG00000019820.11 ENSMUSG00000019820 ENSMUST00000219135 Utrn protein_coding Interval_30608 chr11 95431887 95432923 + 0 NA intron (ENSMUSG00000057522.15, intron 2 of 4) protein_coding-intron (ENSMUSG00000057522.15, intron 1 of 9) 30316 ENSMUSG00000083208.1 ENSMUSG00000083208 ENSMUST00000120533 Gm11522 processed_pseudogene Interval_61882 chr15 84902376 84904439 + 0 NA Intergenic Intergenic -3235 ENSMUSG00000116491.1 ENSMUSG00000116491 ENSMUST00000230387 4930513L16Rik lincRNA Interval_71777 chr17 26024051 26024281 + 0 NA intron (ENSMUSG00000037098.18, intron 3 of 14) protein_coding-intron (ENSMUSG00000037098.18, intron 3 of 13) -5706 ENSMUSG00000037098.18 ENSMUSG00000037098 ENSMUST00000126306 Rab11fip3 protein_coding Interval_125342 chr5 66319302 66319895 + 0 NA intron (ENSMUSG00000029207.16, intron 7 of 12) protein_coding-intron (ENSMUSG00000029207.16, intron 12 of 17) 3419 ENSMUSG00000106818.1 ENSMUSG00000106818 ENSMUST00000202694 Gm43790 TEC Interval_52222 chr14 40829602 40829845 + 0 NA intron (ENSMUSG00000037833.14, intron 6 of 7) protein_coding-intron (ENSMUSG00000037833.14, intron 3 of 4) 63543 ENSMUSG00000037833.14 ENSMUSG00000037833 ENSMUST00000225854 Sh2d4b protein_coding Interval_134122 chr6 20883326 20883680 + 0 NA Intergenic Intergenic 87487 ENSMUSG00000106763.1 ENSMUSG00000106763 ENSMUST00000201133 Gm19102 processed_pseudogene Interval_79453 chr18 32037003 32037287 + 0 NA promoter-TSS (ENSMUSG00000024388.11) protein_coding-promoter-TSS (ENSMUSG00000024388.11) 6056 ENSMUSG00000085300.1 ENSMUSG00000085300 ENSMUST00000146065 Gm16345 processed_pseudogene Interval_54737 chr14 74490748 74491244 + 0 NA Intergenic Intergenic 39437 ENSMUSG00000115427.1 ENSMUSG00000115427 ENSMUST00000226777 Gm49174 processed_pseudogene Interval_113309 chr4 53364591 53365023 + 0 NA Intergenic Intergenic 39223 ENSMUSG00000086267.1 ENSMUSG00000086267 ENSMUST00000154377 Gm12496 lincRNA Interval_140117 chr6 114397384 114399203 + 0 NA exon (ENSMUSG00000053004.9, exon 1 of 2) protein_coding-exon (ENSMUSG00000053004.9, exon 1 of 2) -5373 ENSMUSG00000053004.9 ENSMUSG00000053004 ENSMUST00000160780 Hrh1 protein_coding Interval_128585 chr5 114166436 114166782 + 0 NA intron (ENSMUSG00000042010.16, intron 2 of 52) protein_coding-intron (ENSMUSG00000042010.16, intron 1 of 51) -9297 ENSMUSG00000042010.16 ENSMUSG00000042010 ENSMUST00000142489 Acacb protein_coding Interval_111688 chr4 25811807 25812189 + 0 NA Intergenic Intergenic 7775 ENSMUSG00000065048.1 ENSMUSG00000065048 ENSMUST00000083114 Gm24042 snRNA Interval_38739 chr12 81762344 81764059 + 0 NA intron (ENSMUSG00000042724.8, intron 2 of 7) protein_coding-intron (ENSMUSG00000042724.8, intron 2 of 10) 17808 ENSMUSG00000042724.8 ENSMUSG00000042724 ENSMUST00000223292 Map3k9 protein_coding Interval_75869 chr17 72242046 72242496 + 0 NA intron (ENSMUSG00000055471.7, intron 3 of 4) protein_coding-intron (ENSMUSG00000055471.7, intron 3 of 28) -13987 ENSMUSG00000117046.1 ENSMUSG00000117046 ENSMUST00000233853 Gm19183 processed_pseudogene Interval_168739 chr9 86571167 86572473 + 0 NA promoter-TSS (ENSMUSG00000032417.10) protein_coding-promoter-TSS (ENSMUSG00000032417.10) -171 ENSMUSG00000032417.10 ENSMUSG00000032417 ENSMUST00000179212 Rwdd2a protein_coding Interval_108701 chr3 130478817 130479166 + 0 NA exon (ENSMUSG00000058897.18, exon 10 of 38) protein_coding-exon (ENSMUSG00000058897.18, exon 10 of 38) -60498 ENSMUSG00000105011.1 ENSMUSG00000105011 ENSMUST00000196743 Gm43210 TEC Interval_78652 chr18 16454971 16455879 + 0 NA Intergenic Intergenic -180481 ENSMUSG00000063628.2 ENSMUSG00000063628 ENSMUST00000076710 Gm7665 processed_pseudogene Interval_131479 chr5 137481313 137481829 + 0 NA Intergenic Intergenic 4245 ENSMUSG00000029711.13 ENSMUSG00000029711 ENSMUST00000111039 Epo protein_coding Interval_99272 chr2 158590999 158591841 + 0 NA Intergenic Intergenic 19170 ENSMUSG00000086496.1 ENSMUSG00000086496 ENSMUST00000155319 Gm14204 processed_transcript Interval_7821 chr1 133908282 133909194 + 0 NA promoter-TSS (ENSMUSG00000010311.15) protein_coding-promoter-TSS (ENSMUSG00000010311.15) -739 ENSMUSG00000010311.15 ENSMUSG00000010311 ENSMUST00000126123 Optc protein_coding Interval_87503 chr19 53086972 53087974 + 0 NA Intergenic Intergenic 11230 ENSMUSG00000099988.7 ENSMUSG00000099988 ENSMUST00000236249 1700054A03Rik processed_transcript Interval_169022 chr9 90256982 90257805 + 0 NA intron (ENSMUSG00000037410.13, intron 2 of 4) protein_coding-intron (ENSMUSG00000037410.13, intron 1 of 12) -1466 ENSMUSG00000037410.13 ENSMUSG00000037410 ENSMUST00000144646 Tbc1d2b protein_coding Interval_31763 chr11 102707130 102708018 + 0 NA Intergenic Intergenic -9840 ENSMUSG00000020925.16 ENSMUSG00000020925 ENSMUST00000138147 Ccdc43 protein_coding Interval_147521 chr7 67998999 67999764 + 0 NA intron (ENSMUSG00000005533.10, intron 1 of 20) protein_coding-intron (ENSMUSG00000005533.10, intron 1 of 20) -112796 ENSMUSG00000109152.1 ENSMUSG00000109152 ENSMUST00000208544 Gm44666 processed_pseudogene Interval_78960 chr18 23038874 23042113 + 0 NA promoter-TSS (ENSMUSG00000041923.15) protein_coding-promoter-TSS (ENSMUSG00000041923.15) -1554 ENSMUSG00000041923.15 ENSMUSG00000041923 ENSMUST00000097652 Nol4 protein_coding Interval_64534 chr16 13141452 13143048 + 0 NA intron (ENSMUSG00000022545.13, intron 1 of 1) protein_coding-intron (ENSMUSG00000022545.13, intron 9 of 10) 9859 ENSMUSG00000022545.13 ENSMUSG00000022545 ENSMUST00000156393 Ercc4 protein_coding Interval_110256 chr3 154969837 154970448 + 0 NA intron (ENSMUSG00000040086.13, intron 6 of 22) protein_coding-intron (ENSMUSG00000040086.13, intron 6 of 24) 48846 ENSMUSG00000102238.1 ENSMUSG00000102238 ENSMUST00000195610 Gm37890 TEC Interval_164432 chr9 36982151 36982346 + 0 NA intron (ENSMUSG00000035934.16, intron 2 of 4) protein_coding-intron (ENSMUSG00000035934.16, intron 3 of 12) -33510 ENSMUSG00000093721.1 ENSMUSG00000093721 ENSMUST00000176020 Gm3896 antisense Interval_76760 chr17 83872834 83873187 + 0 NA Intergenic Intergenic -18592 ENSMUSG00000097254.2 ENSMUSG00000097254 ENSMUST00000234697 C430042M11Rik lincRNA Interval_36888 chr12 54981568 54981757 + 0 NA intron (ENSMUSG00000035021.13, intron 2 of 2) protein_coding-intron (ENSMUSG00000035021.13, intron 2 of 26) 4867 ENSMUSG00000092233.1 ENSMUSG00000092233 ENSMUST00000173803 Gm20403 protein_coding Interval_84276 chr19 9231366 9231978 + 0 NA intron (ENSMUSG00000024658.7, intron 3 of 5) antisense-intron (ENSMUSG00000024658.7, intron 3 of 5) 3306 ENSMUSG00000077055.1 ENSMUSG00000077055 ENSMUST00000103867 Gm24543 miRNA Interval_20508 chr10 118103097 118103717 + 0 NA Intergenic Intergenic -9110 ENSMUSG00000112470.1 ENSMUSG00000112470 ENSMUST00000218667 5330439M10Rik lincRNA Interval_158417 chr8 83601780 83602673 + 0 NA intron (ENSMUSG00000031708.17, intron 1 of 5) protein_coding-intron (ENSMUSG00000031708.17, intron 1 of 5) 2213 ENSMUSG00000110690.1 ENSMUSG00000110690 ENSMUST00000212023 Gm18001 processed_pseudogene Interval_39300 chr12 86523408 86523682 + 0 NA Intergenic Intergenic 53428 ENSMUSG00000021255.17 ENSMUSG00000021255 ENSMUST00000136464 Esrrb protein_coding Interval_161066 chr8 117280470 117281160 + 0 NA intron (ENSMUSG00000034390.16, intron 1 of 10) protein_coding-intron (ENSMUSG00000034390.16, intron 1 of 20) 122678 ENSMUSG00000052557.11 ENSMUSG00000052557 ENSMUST00000162997 Gan protein_coding Interval_173085 chrX 71218890 71219580 + 0 NA intron (ENSMUSG00000031337.16, intron 1 of 4) protein_coding-intron (ENSMUSG00000031337.16, intron 1 of 13) 8468 ENSMUSG00000031337.16 ENSMUSG00000031337 ENSMUST00000129722 Mtm1 protein_coding Interval_72469 chr17 30004236 30005624 + 0 NA promoter-TSS (ENSMUSG00000044477.12) protein_coding-promoter-TSS (ENSMUSG00000044477.12) -239 ENSMUSG00000117371.1 ENSMUSG00000117371 ENSMUST00000233996 Gm50019 bidirectional_promoter_lncRNA Interval_103480 chr3 43512766 43513050 + 0 NA Intergenic Intergenic -34265 ENSMUSG00000104303.1 ENSMUSG00000104303 ENSMUST00000192632 Gm36976 TEC Interval_147833 chr7 73941084 73941905 + 0 NA exon (ENSMUSG00000025789.9, exon 6 of 6) protein_coding-exon (ENSMUSG00000025789.9, exon 6 of 6) 6040 ENSMUSG00000108375.1 ENSMUSG00000108375 ENSMUST00000205875 Gm45003 TEC Interval_131976 chr5 141723647 141724254 + 0 NA intron (ENSMUSG00000039683.16, intron 4 of 9) protein_coding-intron (ENSMUSG00000039683.16, intron 4 of 44) -107948 ENSMUSG00000085540.1 ENSMUSG00000085540 ENSMUST00000150385 Gm16036 antisense Interval_30187 chr11 90340545 90340764 + 0 NA TTS (ENSMUSG00000003949.16) protein_coding-TTS (ENSMUSG00000003949.16) 47319 ENSMUSG00000003949.16 ENSMUSG00000003949 ENSMUST00000145786 Hlf protein_coding Interval_157901 chr8 75368552 75369936 + 0 NA Intergenic Intergenic -14558 ENSMUSG00000110543.1 ENSMUSG00000110543 ENSMUST00000211897 Umpk-ps processed_pseudogene Interval_8524 chr1 140587489 140587769 + 0 NA intron (ENSMUSG00000052726.16, intron 26 of 27) protein_coding-intron (ENSMUSG00000052726.16, intron 25 of 26) 68775 ENSMUSG00000102368.1 ENSMUSG00000102368 ENSMUST00000193820 4930590L20Rik antisense Interval_116707 chr4 116756426 116756635 + 0 NA intron (ENSMUSG00000033985.17, intron 4 of 10) protein_coding-intron (ENSMUSG00000033985.17, intron 3 of 10) -15233 ENSMUSG00000033985.17 ENSMUSG00000033985 ENSMUST00000142529 Tesk2 protein_coding Interval_117804 chr4 126315688 126316398 + 0 NA TTS (ENSMUSG00000042558.16) protein_coding-TTS (ENSMUSG00000042558.16) 5326 ENSMUSG00000042558.16 ENSMUSG00000042558 ENSMUST00000133068 Adprhl2 protein_coding Interval_5875 chr1 92882447 92883626 + 0 NA intron (ENSMUSG00000034212.14, intron 9 of 17) protein_coding-intron (ENSMUSG00000034212.14, intron 9 of 17) -11316 ENSMUSG00000034212.14 ENSMUSG00000034212 ENSMUST00000112998 Ankmy1 protein_coding Interval_125879 chr5 75314237 75314727 + 0 NA Intergenic Intergenic -27961 ENSMUSG00000106689.1 ENSMUSG00000106689 ENSMUST00000200710 Gm18345 processed_pseudogene Interval_14241 chr10 29454128 29454425 + 0 NA exon (ENSMUSG00000019880.10, exon 5 of 5) protein_coding-exon (ENSMUSG00000019880.10, exon 5 of 5) 28570 ENSMUSG00000111741.1 ENSMUSG00000111741 ENSMUST00000215343 Gm18903 unprocessed_pseudogene Interval_153880 chr8 10570564 10570812 + 0 NA exon (ENSMUSG00000039057.11, exon 32 of 35) protein_coding-exon (ENSMUSG00000039057.11, exon 32 of 35) 106225 ENSMUSG00000109258.1 ENSMUSG00000109258 ENSMUST00000208649 5330413D20Rik lincRNA Interval_104838 chr3 75707222 75707549 + 0 NA Intergenic Intergenic -7405 ENSMUSG00000088638.1 ENSMUSG00000088638 ENSMUST00000158013 Gm25846 snoRNA Interval_55209 chr14 79336769 79337031 + 0 NA intron (ENSMUSG00000022020.15, intron 6 of 7) protein_coding-intron (ENSMUSG00000022020.15, intron 18 of 19) 13921 ENSMUSG00000022020.15 ENSMUSG00000022020 ENSMUST00000165337 Naa16 protein_coding Interval_134381 chr6 27722509 27722713 + 0 NA intron (ENSMUSG00000024211.15, intron 5 of 9) protein_coding-intron (ENSMUSG00000024211.15, intron 5 of 9) 54524 ENSMUSG00000088391.1 ENSMUSG00000088391 ENSMUST00000157766 Gm26310 snoRNA Interval_34255 chr11 121672690 121673825 + 0 NA promoter-TSS (ENSMUSG00000046605.14) protein_coding-promoter-TSS (ENSMUSG00000046605.14) -104 ENSMUSG00000046605.14 ENSMUSG00000046605 ENSMUST00000062654 B3gntl1 protein_coding Interval_56002 chr14 103970860 103971506 + 0 NA Intergenic Intergenic 23087 ENSMUSG00000104311.1 ENSMUSG00000104311 ENSMUST00000194770 Gm37910 TEC Interval_58923 chr15 40043544 40044299 + 0 NA promoter-TSS (ENSMUSG00000115712.1) processed_pseudogene-promoter-TSS (ENSMUSG00000115712.1) -787 ENSMUSG00000115712.1 ENSMUSG00000115712 ENSMUST00000226568 Gm49255 processed_pseudogene Interval_2315 chr1 37996877 37998657 + 0 NA promoter-TSS (ENSMUSG00000026083.12) protein_coding-promoter-TSS (ENSMUSG00000026083.12) 126 ENSMUSG00000058407.12 ENSMUSG00000058407 ENSMUST00000194692 Txndc9 protein_coding Interval_58032 chr15 26841598 26842045 + 0 NA intron (ENSMUSG00000043556.10, intron 1 of 1) protein_coding-intron (ENSMUSG00000043556.10, intron 1 of 3) 53697 ENSMUSG00000043556.10 ENSMUSG00000043556 ENSMUST00000226377 Fbxl7 protein_coding Interval_24281 chr11 32081811 32082607 + 0 NA Intergenic Intergenic 19019 ENSMUSG00000086386.1 ENSMUSG00000086386 ENSMUST00000145338 Gm12108 lincRNA Interval_70476 chr17 10470322 10470554 + 0 NA intron (ENSMUSG00000089633.2, intron 1 of 1) protein_coding-intron (ENSMUSG00000037196.6, intron 4 of 4) 14222 ENSMUSG00000089633.2 ENSMUSG00000089633 ENSMUST00000160738 A230009B12Rik antisense Interval_143174 chr7 4154495 4156258 + 0 NA intron (ENSMUSG00000063838.6, intron 1 of 1) protein_coding-intron (ENSMUSG00000063838.6, intron 2 of 2) -5002 ENSMUSG00000043432.7 ENSMUSG00000043432 ENSMUST00000058358 Leng9 protein_coding Interval_124539 chr5 50188329 50189752 + 0 NA Intergenic Intergenic -28207 ENSMUSG00000105020.1 ENSMUSG00000105020 ENSMUST00000196032 Gm7205 unprocessed_pseudogene Interval_164933 chr9 43205405 43206184 + 0 NA promoter-TSS (ENSMUSG00000032015.16) protein_coding-promoter-TSS (ENSMUSG00000032015.16) -11328 ENSMUSG00000111864.1 ENSMUSG00000111864 ENSMUST00000216693 Rpl26-ps6 processed_pseudogene Interval_51201 chr14 24864381 24864631 + 0 NA Intergenic Intergenic 30871 ENSMUSG00000114965.1 ENSMUSG00000114965 ENSMUST00000223735 Gm47906 lincRNA Interval_79599 chr18 33940270 33940532 + 0 NA intron (ENSMUSG00000024376.7, intron 2 of 2) protein_coding-intron (ENSMUSG00000024376.7, intron 2 of 23) 66565 ENSMUSG00000024376.7 ENSMUSG00000024376 ENSMUST00000237971 Epb41l4a protein_coding Interval_58463 chr15 34869286 34870493 + 0 NA Intergenic Intergenic 31840 ENSMUSG00000050963.7 ENSMUSG00000050963 ENSMUST00000228725 Kcns2 protein_coding Interval_97506 chr2 138183308 138183850 + 0 NA Intergenic Intergenic -73083 ENSMUSG00000062098.11 ENSMUSG00000062098 ENSMUST00000075410 Btbd3 protein_coding Interval_116633 chr4 116181910 116183562 + 0 NA intron (ENSMUSG00000111410.1, intron 1 of 9) protein_coding-intron (ENSMUSG00000111410.1, intron 1 of 9) 6490 ENSMUSG00000085920.1 ENSMUSG00000085920 ENSMUST00000150216 Gm12951 lincRNA Interval_144242 chr7 23781299 23782232 + 0 NA Intergenic Intergenic 3407 ENSMUSG00000092629.1 ENSMUSG00000092629 ENSMUST00000173029 Vmn1r-ps85 unprocessed_pseudogene Interval_35724 chr12 28659589 28660610 + 0 NA TTS (ENSMUSG00000020630.9) protein_coding-TTS (ENSMUSG00000020630.9) 10475 ENSMUSG00000020630.9 ENSMUSG00000020630 ENSMUST00000221496 Rnaseh1 protein_coding Interval_142133 chr6 137527354 137527929 + 0 NA intron (ENSMUSG00000015766.14, intron 4 of 4) protein_coding-intron (ENSMUSG00000015766.14, intron 5 of 21) 43118 ENSMUSG00000015766.14 ENSMUSG00000015766 ENSMUST00000205037 Eps8 protein_coding Interval_48159 chr13 96786194 96786541 + 0 NA promoter-TSS (ENSMUSG00000109561.1) protein_coding-promoter-TSS (ENSMUSG00000109561.1) -8437 ENSMUSG00000113879.1 ENSMUSG00000113879 ENSMUST00000222172 Gm48580 processed_pseudogene Interval_89578 chr2 22936083 22936613 + 0 NA intron (ENSMUSG00000026784.14, intron 1 of 1) protein_coding-intron (ENSMUSG00000026784.14, intron 10 of 10) -22516 ENSMUSG00000081861.1 ENSMUSG00000081861 ENSMUST00000121960 Gm14441 processed_pseudogene Interval_141570 chr6 129385318 129385699 + 0 NA promoter-TSS (ENSMUSG00000030158.12) protein_coding-promoter-TSS (ENSMUSG00000030158.12) 366 ENSMUSG00000030158.12 ENSMUSG00000030158 ENSMUST00000112082 Clec12b protein_coding Interval_151616 chr7 125393239 125394521 + 0 NA Intergenic Intergenic 24234 ENSMUSG00000108814.1 ENSMUSG00000108814 ENSMUST00000206549 Gm30717 lincRNA Interval_112454 chr4 41363556 41363944 + 0 NA intron (ENSMUSG00000028437.14, intron 1 of 2) protein_coding-intron (ENSMUSG00000028437.14, intron 1 of 6) -7498 ENSMUSG00000028437.14 ENSMUSG00000028437 ENSMUST00000132235 Ubap1 protein_coding Interval_142459 chr6 142514857 142515606 + 0 NA Intergenic Intergenic -7288 ENSMUSG00000030246.12 ENSMUSG00000030246 ENSMUST00000134191 Ldhb protein_coding Interval_151073 chr7 118313593 118315394 + 0 NA Intergenic Intergenic -14993 ENSMUSG00000108856.1 ENSMUSG00000108856 ENSMUST00000208337 Gm35309 lincRNA Interval_80297 chr18 38940230 38941841 + 0 NA intron (ENSMUSG00000118193.1, intron 2 of 5) lincRNA-intron (ENSMUSG00000117994.1, intron 4 of 4) 48318 ENSMUSG00000117994.1 ENSMUSG00000117994 ENSMUST00000156167 Gm5820 lincRNA Interval_145503 chr7 35256885 35257161 + 0 NA intron (ENSMUSG00000118454.1, intron 5 of 9) protein_coding-intron (ENSMUSG00000118454.1, intron 5 of 9) 18510 ENSMUSG00000118454.1 ENSMUSG00000118454 ENSMUST00000238407 Wdr88 protein_coding Interval_166629 chr9 61395038 61395463 + 0 NA TTS (ENSMUSG00000032280.16) protein_coding-TTS (ENSMUSG00000032280.16) 22884 ENSMUSG00000032280.16 ENSMUSG00000032280 ENSMUST00000162281 Tle3 protein_coding Interval_112949 chr4 46356301 46357218 + 0 NA Intergenic Intergenic -11244 ENSMUSG00000087383.7 ENSMUSG00000087383 ENSMUST00000152069 Gm12446 antisense Interval_151651 chr7 125697099 125697340 + 0 NA intron (ENSMUSG00000032777.9, intron 4 of 5) protein_coding-intron (ENSMUSG00000032777.9, intron 4 of 36) -10698 ENSMUSG00000032743.15 ENSMUSG00000032743 ENSMUST00000155059 D430042O09Rik protein_coding Interval_113761 chr4 58415648 58416046 + 0 NA Intergenic Intergenic 25251 ENSMUSG00000093293.1 ENSMUSG00000093293 ENSMUST00000175552 Mir3095 miRNA Interval_97619 chr2 140758129 140758814 + 0 NA intron (ENSMUSG00000068205.14, intron 3 of 3) protein_coding-intron (ENSMUSG00000068205.14, intron 3 of 17) -87021 ENSMUSG00000051379.12 ENSMUSG00000051379 ENSMUST00000056760 Flrt3 protein_coding Interval_141716 chr6 133986679 133988685 + 0 NA Intergenic Intergenic -55273 ENSMUSG00000107771.1 ENSMUSG00000107771 ENSMUST00000203939 Gm8956 processed_pseudogene Interval_151385 chr7 122000365 122000710 + 0 NA intron (ENSMUSG00000030872.14, intron 1 of 9) protein_coding-intron (ENSMUSG00000030872.14, intron 8 of 16) 18776 ENSMUSG00000108511.1 ENSMUSG00000108511 ENSMUST00000206578 Gm44987 antisense Interval_34565 chr12 5205928 5206409 + 0 NA intron (ENSMUSG00000020627.10, intron 2 of 11) protein_coding-intron (ENSMUSG00000020627.10, intron 3 of 13) 29796 ENSMUSG00000112020.1 ENSMUSG00000112020 ENSMUST00000219031 Gm48532 TEC Interval_1903 chr1 34447638 34448458 + 0 NA promoter-TSS (ENSMUSG00000026127.13) protein_coding-promoter-TSS (ENSMUSG00000026127.13) -199 ENSMUSG00000026127.13 ENSMUSG00000026127 ENSMUST00000191000 Imp4 protein_coding Interval_133150 chr5 150206543 150206975 + 0 NA intron (ENSMUSG00000056602.12, intron 1 of 3) protein_coding-intron (ENSMUSG00000056602.12, intron 2 of 4) -37104 ENSMUSG00000107082.1 ENSMUSG00000107082 ENSMUST00000201709 Gm36378 processed_pseudogene Interval_139223 chr6 97302351 97302657 + 0 NA intron (ENSMUSG00000030064.16, intron 7 of 12) protein_coding-intron (ENSMUSG00000030064.16, intron 17 of 22) -11243 ENSMUSG00000030064.16 ENSMUSG00000030064 ENSMUST00000124050 Frmd4b protein_coding Interval_116303 chr4 109495107 109495767 + 0 NA Intergenic Intergenic -10709 ENSMUSG00000028557.10 ENSMUSG00000028557 ENSMUST00000145980 Rnf11 protein_coding Interval_80520 chr18 43292437 43293271 + 0 NA intron (ENSMUSG00000039954.9, intron 6 of 11) protein_coding-intron (ENSMUSG00000039954.9, intron 6 of 12) 80369 ENSMUSG00000024501.20 ENSMUSG00000024501 ENSMUST00000118071 Dpysl3 protein_coding Interval_1995 chr1 35781011 35781253 + 0 NA Intergenic Intergenic 19530 ENSMUSG00000064601.1 ENSMUSG00000064601 ENSMUST00000082667 Gm25634 snRNA Interval_19402 chr10 98962310 98962586 + 0 NA intron (ENSMUSG00000019943.10, intron 1 of 8) protein_coding-intron (ENSMUSG00000019943.10, intron 1 of 20) -28432 ENSMUSG00000019943.10 ENSMUSG00000019943 ENSMUST00000218419 Atp2b1 protein_coding Interval_140412 chr6 117936480 117938037 + 0 NA promoter-TSS (ENSMUSG00000004988.9) protein_coding-promoter-TSS (ENSMUSG00000004988.9) -1305 ENSMUSG00000004988.9 ENSMUSG00000004988 ENSMUST00000203842 Fxyd4 protein_coding Interval_103024 chr3 34589578 34589838 + 0 NA promoter-TSS (ENSMUSG00000105265.4) processed_transcript-promoter-TSS (ENSMUSG00000105265.4) 12540 ENSMUSG00000105222.1 ENSMUSG00000105222 ENSMUST00000199244 Gm42205 lincRNA Interval_54004 chr14 64327334 64327919 + 0 NA intron (ENSMUSG00000054733.9, intron 1 of 2) protein_coding-intron (ENSMUSG00000054733.9, intron 6 of 10) 89322 ENSMUSG00000054733.9 ENSMUSG00000054733 ENSMUST00000209513 Msra protein_coding Interval_90322 chr2 29770061 29770922 + 0 NA intron (ENSMUSG00000039826.13, intron 6 of 6) protein_coding-intron (ENSMUSG00000039826.13, intron 6 of 6) 11179 ENSMUSG00000075425.10 ENSMUSG00000075425 ENSMUST00000113809 Gm13547 protein_coding Interval_81513 chr18 61298948 61299669 + 0 NA intron (ENSMUSG00000033871.14, intron 11 of 11) protein_coding-intron (ENSMUSG00000033871.14, intron 12 of 12) 24285 ENSMUSG00000024575.16 ENSMUSG00000024575 ENSMUST00000135688 Pde6a protein_coding Interval_60968 chr15 78354956 78355416 + 0 NA Intergenic Intergenic 6587 ENSMUSG00000099059.1 ENSMUSG00000099059 ENSMUST00000183523 Mir7676-2 miRNA Interval_47166 chr13 76878606 76878864 + 0 NA intron (ENSMUSG00000021596.16, intron 15 of 20) protein_coding-intron (ENSMUSG00000021596.16, intron 15 of 20) 53528 ENSMUSG00000021596.16 ENSMUSG00000021596 ENSMUST00000149028 Mctp1 protein_coding Interval_39986 chr12 100267900 100268249 + 0 NA Intergenic Intergenic -22182 ENSMUSG00000113679.1 ENSMUSG00000113679 ENSMUST00000220721 Gm10432 processed_transcript Interval_30299 chr11 93236287 93236641 + 0 NA intron (ENSMUSG00000056158.14, intron 2 of 8) protein_coding-intron (ENSMUSG00000056158.14, intron 3 of 9) 138436 ENSMUSG00000056158.14 ENSMUSG00000056158 ENSMUST00000107863 Car10 protein_coding Interval_4192 chr1 71530674 71532052 + 0 NA Intergenic Intergenic -25816 ENSMUSG00000026192.13 ENSMUSG00000026192 ENSMUST00000154855 Atic protein_coding Interval_158269 chr8 80730585 80730826 + 0 NA intron (ENSMUSG00000031715.14, intron 3 of 19) protein_coding-intron (ENSMUSG00000031715.14, intron 3 of 23) -1568 ENSMUSG00000110142.1 ENSMUSG00000110142 ENSMUST00000209804 Gm45872 TEC Interval_6349 chr1 106163632 106165002 + 0 NA intron (ENSMUSG00000101583.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000101583.1, intron 1 of 2) 7207 ENSMUSG00000101583.1 ENSMUSG00000101583 ENSMUST00000190105 Gm20753 lincRNA Interval_162 JH584304.1 36056 41481 + 0 NA NA NA NA NA Interval_140983 chr6 123809892 123810958 + 0 NA intron (ENSMUSG00000072780.3, intron 4 of 4) protein_coding-intron (ENSMUSG00000072780.3, intron 5 of 5) -2204 ENSMUSG00000088472.1 ENSMUSG00000088472 ENSMUST00000157847 Gm23079 snoRNA Interval_134597 chr6 29838928 29841034 + 0 NA intron (ENSMUSG00000029772.17, intron 3 of 4) protein_coding-intron (ENSMUSG00000029772.17, intron 1 of 16) -36698 ENSMUSG00000029772.17 ENSMUSG00000029772 ENSMUST00000128837 Ahcyl2 protein_coding Interval_168362 chr9 79617118 79618429 + 0 NA intron (ENSMUSG00000032332.17, intron 52 of 64) protein_coding-intron (ENSMUSG00000032332.17, intron 52 of 65) 43965 ENSMUSG00000111207.1 ENSMUSG00000111207 ENSMUST00000216602 Gm8125 processed_pseudogene Interval_18073 chr10 82113551 82114410 + 0 NA Intergenic Intergenic -14033 ENSMUSG00000078435.5 ENSMUSG00000078435 ENSMUST00000105314 AU041133 protein_coding Interval_22781 chr11 15425473 15425678 + 0 NA Intergenic Intergenic 13275 ENSMUSG00000064746.1 ENSMUSG00000064746 ENSMUST00000082812 Gm24707 snRNA Interval_33450 chr11 116605850 116606260 + 0 NA exon (ENSMUSG00000020806.15, exon 4 of 8) protein_coding-exon (ENSMUSG00000020806.15, exon 4 of 8) -3460 ENSMUSG00000020806.15 ENSMUSG00000020806 ENSMUST00000126819 Rhbdf2 protein_coding Interval_71567 chr17 24593954 24596864 + 0 NA TTS (ENSMUSG00000002496.10) protein_coding-TTS (ENSMUSG00000002496.10) 431 ENSMUSG00000080342.1 ENSMUSG00000080342 ENSMUST00000116692 Gm24589 miRNA Interval_112120 chr4 34825636 34825916 + 0 NA intron (ENSMUSG00000039967.14, intron 5 of 7) protein_coding-intron (ENSMUSG00000039967.14, intron 5 of 7) -17209 ENSMUSG00000082367.1 ENSMUSG00000082367 ENSMUST00000122250 Gm12363 processed_pseudogene Interval_103035 chr3 34657255 34657500 + 0 NA intron (ENSMUSG00000105265.4, intron 1 of 1) processed_transcript-intron (ENSMUSG00000105265.4, intron 3 of 3) 4199 ENSMUSG00000098254.1 ENSMUSG00000098254 ENSMUST00000184690 Gm27611 misc_RNA Interval_85934 chr19 33568094 33568998 + 0 NA intron (ENSMUSG00000024766.15, intron 7 of 10) protein_coding-intron (ENSMUSG00000024766.15, intron 7 of 10) -7164 ENSMUSG00000024766.15 ENSMUSG00000024766 ENSMUST00000235583 Lipo3 protein_coding Interval_680 chr1 9842256 9842485 + 0 NA intron (ENSMUSG00000025915.14, intron 2 of 17) protein_coding-intron (ENSMUSG00000025915.14, intron 1 of 16) -7768 ENSMUSG00000088916.1 ENSMUSG00000088916 ENSMUST00000158291 Gm22607 snRNA Interval_20279 chr10 116636918 116637163 + 0 NA Intergenic Intergenic -2252 ENSMUSG00000112436.1 ENSMUSG00000112436 ENSMUST00000218860 Gm48403 processed_pseudogene Interval_59633 chr15 56810291 56810504 + 0 NA Intergenic Intergenic -26969 ENSMUSG00000115493.1 ENSMUSG00000115493 ENSMUST00000228866 Gm5673 processed_pseudogene Interval_63101 chr15 99073992 99075478 + 0 NA promoter-TSS (ENSMUSG00000032783.9) protein_coding-promoter-TSS (ENSMUSG00000032783.9) -66 ENSMUSG00000116371.1 ENSMUSG00000116371 ENSMUST00000230027 Gm34284 antisense Interval_45114 chr13 52359032 52360065 + 0 NA Intergenic Intergenic 171731 ENSMUSG00000047842.7 ENSMUSG00000047842 ENSMUST00000057442 Diras2 protein_coding Interval_134022 chr6 17796399 17797703 + 0 NA intron (ENSMUSG00000029534.17, intron 1 of 15) protein_coding-intron (ENSMUSG00000029534.17, intron 1 of 14) 38134 ENSMUSG00000097700.1 ENSMUSG00000097700 ENSMUST00000181312 Gm26738 antisense Interval_1643 chr1 30748667 30748835 + 0 NA Intergenic Intergenic -20936 ENSMUSG00000100261.1 ENSMUSG00000100261 ENSMUST00000188572 Gm6473 unprocessed_pseudogene Interval_96954 chr2 129873483 129874726 + 0 NA Intergenic Intergenic 73587 ENSMUSG00000037885.18 ENSMUSG00000037885 ENSMUST00000166282 Stk35 protein_coding Interval_74831 chr17 56773407 56773651 + 0 NA Intergenic Intergenic 3279 ENSMUSG00000090273.3 ENSMUSG00000090273 ENSMUST00000168666 Prr22 protein_coding Interval_85809 chr19 32095991 32096196 + 0 NA intron (ENSMUSG00000024887.10, intron 2 of 24) protein_coding-intron (ENSMUSG00000024887.10, intron 2 of 23) -79289 ENSMUSG00000024887.10 ENSMUSG00000024887 ENSMUST00000235395 Asah2 protein_coding Interval_64671 chr16 14030230 14031986 + 0 NA intron (ENSMUSG00000044117.12, intron 1 of 3) protein_coding-intron (ENSMUSG00000044117.12, intron 1 of 5) 7753 ENSMUSG00000082277.2 ENSMUSG00000082277 ENSMUST00000119880 Gm15807 processed_pseudogene Interval_164384 chr9 36602195 36602663 + 0 NA Intergenic Intergenic -19794 ENSMUSG00000091248.1 ENSMUSG00000091248 ENSMUST00000170030 Pate8 protein_coding Interval_109934 chr3 151929940 151930193 + 0 NA Intergenic Intergenic -3657 ENSMUSG00000087997.1 ENSMUSG00000087997 ENSMUST00000157372 Gm25056 snRNA Interval_74468 chr17 51294690 51294888 + 0 NA Intergenic Intergenic -57727 ENSMUSG00000117168.1 ENSMUSG00000117168 ENSMUST00000233846 Gm49908 processed_pseudogene Interval_67463 chr16 49020844 49021490 + 0 NA Intergenic Intergenic 5330 ENSMUSG00000033031.13 ENSMUSG00000033031 ENSMUST00000149004 Cip2a protein_coding Interval_90132 chr2 28440885 28441631 + 0 NA Intergenic Intergenic -6683 ENSMUSG00000035829.13 ENSMUSG00000035829 ENSMUST00000040324 Ppp1r26 protein_coding Interval_132773 chr5 147784448 147784665 + 0 NA Intergenic Intergenic -37689 ENSMUSG00000107065.1 ENSMUSG00000107065 ENSMUST00000202661 Gm43155 processed_pseudogene Interval_155731 chr8 36565285 36566070 + 0 NA Intergenic Intergenic 76486 ENSMUSG00000039620.17 ENSMUSG00000039620 ENSMUST00000125492 Trmt9b protein_coding Interval_104921 chr3 79023084 79023291 + 0 NA Intergenic Intergenic 43265 ENSMUSG00000077487.1 ENSMUSG00000077487 ENSMUST00000104299 Gm23440 snoRNA Interval_139219 chr6 97264365 97264807 + 0 NA Intergenic Intergenic -11827 ENSMUSG00000044086.8 ENSMUSG00000044086 ENSMUST00000095655 Lmod3 protein_coding Interval_107235 chr3 104796074 104797077 + 0 NA intron (ENSMUSG00000002227.15, intron 17 of 20) protein_coding-intron (ENSMUSG00000002227.15, intron 16 of 19) 7347 ENSMUSG00000002233.13 ENSMUSG00000002233 ENSMUST00000132721 Rhoc protein_coding Interval_84316 chr19 10039803 10040070 + 0 NA Intergenic Intergenic -1796 ENSMUSG00000024664.5 ENSMUSG00000024664 ENSMUST00000237226 Fads3 protein_coding Interval_48242 chr13 97382918 97383206 + 0 NA Intergenic Intergenic 6828 ENSMUSG00000114425.1 ENSMUSG00000114425 ENSMUST00000223964 Gm33447 lincRNA Interval_69048 chr16 90305406 90306070 + 0 NA Intergenic Intergenic -9134 ENSMUSG00000116600.1 ENSMUSG00000116600 ENSMUST00000232142 Gm49707 lincRNA Interval_118185 chr4 129417902 129418754 + 0 NA Intergenic Intergenic 14201 ENSMUSG00000048485.12 ENSMUSG00000048485 ENSMUST00000124364 Zbtb8b protein_coding Interval_52423 chr14 45962978 45963683 + 0 NA intron (ENSMUSG00000115000.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000085866.1, intron 1 of 3) 27707 ENSMUSG00000115000.1 ENSMUSG00000115000 ENSMUST00000226359 Gm49192 lincRNA Interval_44504 chr13 45484644 45484867 + 0 NA Intergenic Intergenic 1575 ENSMUSG00000089211.1 ENSMUSG00000089211 ENSMUST00000158586 Gm23387 snRNA Interval_59775 chr15 59153629 59155060 + 0 NA Intergenic Intergenic -56564 ENSMUSG00000025922.9 ENSMUSG00000025922 ENSMUST00000027054 Rpl7-ps8 processed_pseudogene Interval_123455 chr5 32656430 32656625 + 0 NA intron (ENSMUSG00000014932.15, intron 8 of 11) protein_coding-intron (ENSMUSG00000014932.15, intron 8 of 11) -5462 ENSMUSG00000085234.1 ENSMUSG00000085234 ENSMUST00000155976 Gm15614 antisense Interval_121187 chr4 153890862 153891930 + 0 NA Intergenic Intergenic 15012 ENSMUSG00000077519.1 ENSMUSG00000077519 ENSMUST00000104331 Gm25880 snoRNA Interval_138200 chr6 86157123 86157754 + 0 NA Intergenic Intergenic 10286 ENSMUSG00000107857.1 ENSMUSG00000107857 ENSMUST00000203685 Gm19596 unprocessed_pseudogene Interval_114926 chr4 87059114 87059312 + 0 NA intron (ENSMUSG00000037996.17, intron 3 of 5) protein_coding-intron (ENSMUSG00000037996.17, intron 3 of 9) 128522 ENSMUSG00000038007.14 ENSMUSG00000038007 ENSMUST00000135874 Acer2 protein_coding Interval_142063 chr6 136881886 136882094 + 0 NA Intergenic Intergenic -6209 ENSMUSG00000030218.2 ENSMUSG00000030218 ENSMUST00000203103 Mgp protein_coding Interval_156142 chr8 45068835 45069364 + 0 NA promoter-TSS (ENSMUSG00000054764.9) protein_coding-promoter-TSS (ENSMUSG00000054764.9) -6646 ENSMUSG00000066158.7 ENSMUSG00000066158 ENSMUST00000166107 AY512931 lincRNA Interval_87339 chr19 47820804 47822756 + 0 NA intron (ENSMUSG00000044948.17, intron 5 of 37) protein_coding-intron (ENSMUSG00000044948.17, intron 5 of 13) -33258 ENSMUSG00000025068.8 ENSMUSG00000025068 ENSMUST00000143694 Gsto1 protein_coding Interval_88401 chr2 4816426 4818174 + 0 NA Intergenic Intergenic 17312 ENSMUSG00000083407.1 ENSMUSG00000083407 ENSMUST00000117910 Gm13176 processed_pseudogene Interval_72991 chr17 34013799 34014223 + 0 NA Intergenic Intergenic -3029 ENSMUSG00000118082.1 ENSMUSG00000118082 ENSMUST00000237140 Gm7326 processed_pseudogene Interval_40325 chr12 103643303 103643570 + 0 NA Intergenic Intergenic -1367 ENSMUSG00000101916.1 ENSMUSG00000101916 ENSMUST00000185363 Gm18501 processed_pseudogene Interval_16928 chr10 69967740 69969117 + 0 NA intron (ENSMUSG00000069601.14, intron 29 of 42) protein_coding-intron (ENSMUSG00000069601.14, intron 4 of 16) -206583 ENSMUSG00000048701.13 ENSMUSG00000048701 ENSMUST00000135607 Ccdc6 protein_coding Interval_75699 chr17 70745455 70746642 + 0 NA exon (ENSMUSG00000097282.1, exon 3 of 3) antisense-exon (ENSMUSG00000097282.1, exon 3 of 3) 9534 ENSMUSG00000097282.1 ENSMUSG00000097282 ENSMUST00000181546 5031415H12Rik antisense Interval_109213 chr3 137944546 137945061 + 0 NA intron (ENSMUSG00000028159.14, intron 2 of 6) protein_coding-intron (ENSMUSG00000028159.14, intron 4 of 8) 9910 ENSMUSG00000028159.14 ENSMUSG00000028159 ENSMUST00000199541 Dapp1 protein_coding Interval_134035 chr6 17902092 17902798 + 0 NA intron (ENSMUSG00000029534.17, intron 7 of 7) protein_coding-intron (ENSMUSG00000029534.17, intron 9 of 14) -3262 ENSMUSG00000098570.1 ENSMUSG00000098570 ENSMUST00000184157 Gm27444 misc_RNA Interval_94360 chr2 90485785 90486874 + 0 NA intron (ENSMUSG00000085471.1, intron 1 of 1) antisense-intron (ENSMUSG00000085471.1, intron 1 of 1) 7079 ENSMUSG00000085471.1 ENSMUSG00000085471 ENSMUST00000126953 4933423P22Rik antisense Interval_94873 chr2 99010857 99011190 + 0 NA Intergenic Intergenic -343722 ENSMUSG00000075014.1 ENSMUSG00000075014 ENSMUST00000099683 Gm10800 protein_coding Interval_106723 chr3 100034494 100035248 + 0 NA intron (ENSMUSG00000027867.10, intron 16 of 48) protein_coding-intron (ENSMUSG00000027867.10, intron 2 of 3) 26511 ENSMUSG00000080754.1 ENSMUSG00000080754 ENSMUST00000119462 Rpl36-ps7 processed_pseudogene Interval_66435 chr16 33843658 33845366 + 0 NA intron (ENSMUSG00000022817.15, intron 1 of 14) protein_coding-intron (ENSMUSG00000022817.15, intron 1 of 14) -20232 ENSMUSG00000116916.1 ENSMUSG00000116916 ENSMUST00000231807 Gm34967 processed_pseudogene Interval_149118 chr7 94173708 94174496 + 0 NA intron (ENSMUSG00000108532.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000108532.1, intron 1 of 1) -23108 ENSMUSG00000096033.2 ENSMUSG00000096033 ENSMUST00000071770 Gm5899 processed_pseudogene Interval_84899 chr19 18681046 18681380 + 0 NA intron (ENSMUSG00000024726.10, intron 3 of 7) protein_coding-intron (ENSMUSG00000024726.10, intron 3 of 7) 9884 ENSMUSG00000024726.10 ENSMUSG00000024726 ENSMUST00000236401 Carnmt1 protein_coding Interval_93358 chr2 72389602 72390752 + 0 NA TTS (ENSMUSG00000004085.14) protein_coding-TTS (ENSMUSG00000004085.14) 29930 ENSMUSG00000084261.1 ENSMUSG00000084261 ENSMUST00000121019 Rpl36a-ps4 processed_pseudogene Interval_115404 chr4 98693868 98694084 + 0 NA intron (ENSMUSG00000061859.17, intron 42 of 44) protein_coding-intron (ENSMUSG00000061859.17, intron 42 of 43) 29610 ENSMUSG00000081046.1 ENSMUSG00000081046 ENSMUST00000120431 Gm12846 processed_pseudogene Interval_58679 chr15 37006826 37007958 + 0 NA promoter-TSS (ENSMUSG00000062397.8) protein_coding-promoter-TSS (ENSMUSG00000062397.8) -191 ENSMUSG00000097259.2 ENSMUSG00000097259 ENSMUST00000227544 Gm26766 antisense Interval_129510 chr5 120648507 120650169 + 0 NA TTS (ENSMUSG00000089830.1) lincRNA-TTS (ENSMUSG00000089830.1) 150 ENSMUSG00000029602.11 ENSMUSG00000029602 ENSMUST00000154759 Rasal1 protein_coding Interval_46955 chr13 73723084 73724292 + 0 NA Intergenic Intergenic 19972 ENSMUSG00000021566.7 ENSMUSG00000021566 ENSMUST00000160958 Slc6a19os antisense Interval_82319 chr18 70601201 70601428 + 0 NA intron (ENSMUSG00000024513.16, intron 3 of 5) protein_coding-intron (ENSMUSG00000024513.16, intron 3 of 6) 8059 ENSMUSG00000024513.16 ENSMUSG00000024513 ENSMUST00000128555 Mbd2 protein_coding Interval_4177 chr1 71289670 71290737 + 0 NA exon (ENSMUSG00000050296.14, exon 9 of 9) protein_coding-exon (ENSMUSG00000050296.14, exon 9 of 9) 45583 ENSMUSG00000050296.14 ENSMUSG00000050296 ENSMUST00000189102 Abca12 protein_coding Interval_168467 chr9 81482003 81482229 + 0 NA Intergenic Intergenic 26719 ENSMUSG00000098429.1 ENSMUSG00000098429 ENSMUST00000184676 Gm27226 lincRNA Interval_136577 chr6 55950092 55950999 + 0 NA intron (ENSMUSG00000037973.6, intron 5 of 9) protein_coding-intron (ENSMUSG00000037973.6, intron 9 of 13) 63720 ENSMUSG00000037973.6 ENSMUSG00000037973 ENSMUST00000169699 Itprid1 protein_coding Interval_98189 chr2 149642754 149643006 + 0 NA Intergenic Intergenic -76595 ENSMUSG00000089270.1 ENSMUSG00000089270 ENSMUST00000158645 Gm24551 snoRNA Interval_168847 chr9 88007953 88008148 + 0 NA Intergenic Intergenic 13499 ENSMUSG00000077553.1 ENSMUSG00000077553 ENSMUST00000104365 Gm23176 snoRNA Interval_104695 chr3 69506392 69506631 + 0 NA intron (ENSMUSG00000027784.10, intron 2 of 3) protein_coding-intron (ENSMUSG00000027784.10, intron 2 of 3) 9298 ENSMUSG00000027784.10 ENSMUSG00000027784 ENSMUST00000128637 Ppm1l protein_coding Interval_19355 chr10 97602937 97603407 + 0 NA Intergenic Intergenic -3707 ENSMUSG00000019932.8 ENSMUSG00000019932 ENSMUST00000105286 Kera protein_coding Interval_69781 chr16 96280388 96281408 + 0 NA promoter-TSS (ENSMUSG00000074892.9) protein_coding-promoter-TSS (ENSMUSG00000074892.9) 7424 ENSMUSG00000074892.9 ENSMUSG00000074892 ENSMUST00000099497 B3galt5 protein_coding Interval_107158 chr3 104019612 104020521 + 0 NA intron (ENSMUSG00000052539.15, intron 19 of 20) protein_coding-intron (ENSMUSG00000052539.15, intron 19 of 21) 38075 ENSMUSG00000104721.1 ENSMUSG00000104721 ENSMUST00000199859 Gm42696 sense_intronic Interval_74840 chr17 56817985 56818678 + 0 NA intron (ENSMUSG00000024206.15, intron 1 of 4) protein_coding-intron (ENSMUSG00000024206.15, intron 1 of 17) 12608 ENSMUSG00000024206.15 ENSMUSG00000024206 ENSMUST00000233643 Rfx2 protein_coding Interval_94675 chr2 93217042 93217562 + 0 NA intron (ENSMUSG00000027217.13, intron 5 of 9) protein_coding-intron (ENSMUSG00000027217.13, intron 4 of 8) 29754 ENSMUSG00000068735.14 ENSMUSG00000068735 ENSMUST00000143164 Trp53i11 protein_coding Interval_135964 chr6 49120490 49120691 + 0 NA intron (ENSMUSG00000029814.10, intron 5 of 9) protein_coding-intron (ENSMUSG00000029814.10, intron 5 of 14) -26379 ENSMUSG00000029814.10 ENSMUSG00000029814 ENSMUST00000203680 Igf2bp3 protein_coding Interval_122198 chr5 19366023 19366452 + 0 NA intron (ENSMUSG00000040003.18, intron 1 of 2) protein_coding-intron (ENSMUSG00000040003.18, intron 1 of 22) 139886 ENSMUSG00000106204.1 ENSMUSG00000106204 ENSMUST00000197169 Gm21009 processed_pseudogene Interval_144946 chr7 29050755 29051049 + 0 NA intron (ENSMUSG00000030592.18, intron 77 of 108) protein_coding-intron (ENSMUSG00000030592.18, intron 76 of 105) 5274 ENSMUSG00000105563.1 ENSMUSG00000105563 ENSMUST00000200205 Gm44408 miRNA Interval_78994 chr18 23785350 23785891 + 0 NA intron (ENSMUSG00000024277.14, intron 2 of 7) protein_coding-intron (ENSMUSG00000024277.14, intron 2 of 7) -10631 ENSMUSG00000098607.1 ENSMUSG00000098607 ENSMUST00000184278 Mir6360 miRNA Interval_138914 chr6 93478431 93479432 + 0 NA Intergenic Intergenic -23374 ENSMUSG00000107848.1 ENSMUSG00000107848 ENSMUST00000203106 Gm44181 TEC Interval_46634 chr13 67797888 67799558 + 0 NA intron (ENSMUSG00000097276.1, intron 2 of 2) antisense-intron (ENSMUSG00000097276.1, intron 2 of 2) -11523 ENSMUSG00000097906.1 ENSMUSG00000097906 ENSMUST00000180422 Gm9625 processed_pseudogene Interval_50273 chr14 11574220 11575098 + 0 NA intron (ENSMUSG00000021745.14, intron 1 of 3) protein_coding-intron (ENSMUSG00000021745.14, intron 1 of 29) -53889 ENSMUSG00000114849.1 ENSMUSG00000114849 ENSMUST00000224543 Gm48595 lincRNA Interval_4652 chr1 75695960 75696185 + 0 NA Intergenic Intergenic 59682 ENSMUSG00000082012.1 ENSMUSG00000082012 ENSMUST00000121823 Gm5257 processed_pseudogene Interval_167906 chr9 74066225 74067172 + 0 NA Intergenic Intergenic 7359 ENSMUSG00000095631.1 ENSMUSG00000095631 ENSMUST00000083215 n-R5s86 rRNA Interval_32190 chr11 106020000 106021044 + 0 NA exon (ENSMUSG00000001901.15, exon 8 of 13) protein_coding-exon (ENSMUSG00000001901.15, exon 8 of 13) 12319 ENSMUSG00000001901.15 ENSMUSG00000001901 ENSMUST00000140695 Kcnh6 protein_coding Interval_135085 chr6 35259152 35259592 + 0 NA intron (ENSMUSG00000073155.12, intron 1 of 2) protein_coding-intron (ENSMUSG00000073155.12, intron 2 of 3) 6718 ENSMUSG00000073155.12 ENSMUSG00000073155 ENSMUST00000136110 1810058I24Rik protein_coding Interval_48709 chr13 101760450 101761065 + 0 NA intron (ENSMUSG00000041417.15, intron 1 of 1) protein_coding-intron (ENSMUSG00000041417.15, intron 1 of 15) -7552 ENSMUSG00000102635.1 ENSMUSG00000102635 ENSMUST00000193295 Gm36638 TEC Interval_33141 chr11 114713402 114714725 + 0 NA intron (ENSMUSG00000034714.9, intron 13 of 13) protein_coding-intron (ENSMUSG00000034714.9, intron 13 of 13) -13345 ENSMUSG00000034706.16 ENSMUSG00000034706 ENSMUST00000130692 Dnaic2 protein_coding Interval_71393 chr17 23244989 23245936 + 0 NA intron (ENSMUSG00000093493.1, intron 5 of 5) unprocessed_pseudogene-intron (ENSMUSG00000093493.1, intron 5 of 5) 31716 ENSMUSG00000093493.1 ENSMUSG00000093493 ENSMUST00000176979 Vmn2r-ps133 unprocessed_pseudogene Interval_154601 chr8 21992318 21992652 + 0 NA TTS (ENSMUSG00000006567.11) protein_coding-TTS (ENSMUSG00000006567.11) 22710 ENSMUSG00000017049.4 ENSMUSG00000017049 ENSMUST00000017193 Ccdc70 protein_coding Interval_58793 chr15 38095147 38095428 + 0 NA Intergenic Intergenic 16185 ENSMUSG00000115771.1 ENSMUSG00000115771 ENSMUST00000228698 Gm49312 bidirectional_promoter_lncRNA Interval_70205 chr17 6202560 6205027 + 0 NA intron (ENSMUSG00000034377.10, intron 5 of 13) protein_coding-intron (ENSMUSG00000034377.10, intron 5 of 13) -50110 ENSMUSG00000095869.1 ENSMUSG00000095869 ENSMUST00000179333 Ppp1r2-ps6 processed_pseudogene Interval_144047 chr7 19178572 19181562 + 0 NA intron (ENSMUSG00000040811.15, intron 4 of 21) protein_coding-intron (ENSMUSG00000040811.15, intron 4 of 21) -1114 ENSMUSG00000040811.15 ENSMUSG00000040811 ENSMUST00000146095 Eml2 protein_coding Interval_91221 chr2 36032913 36033719 + 0 NA Intergenic Intergenic 16090 ENSMUSG00000026895.7 ENSMUSG00000026895 ENSMUST00000070112 Ndufa8 protein_coding Interval_129192 chr5 118098729 118099754 + 0 NA intron (ENSMUSG00000032867.8, intron 5 of 7) protein_coding-intron (ENSMUSG00000032867.8, intron 5 of 10) 33881 ENSMUSG00000029360.3 ENSMUSG00000029360 ENSMUST00000031305 Gm9754 antisense Interval_76297 chr17 78881910 78883077 + 0 NA promoter-TSS (ENSMUSG00000024079.4) protein_coding-promoter-TSS (ENSMUSG00000024079.4) 55 ENSMUSG00000024079.4 ENSMUSG00000024079 ENSMUST00000171451 Eif2ak2 protein_coding Interval_63382 chr15 100728706 100730008 + 0 NA promoter-TSS (ENSMUSG00000037280.12) protein_coding-promoter-TSS (ENSMUSG00000037280.12) 3380 ENSMUSG00000116504.1 ENSMUSG00000116504 ENSMUST00000230334 I730030J21Rik processed_transcript Interval_68136 chr16 65582122 65582751 + 0 NA Intergenic Intergenic -19916 ENSMUSG00000004843.7 ENSMUSG00000004843 ENSMUST00000004965 Chmp2b protein_coding Interval_125475 chr5 67437192 67437396 + 0 NA exon (ENSMUSG00000097840.1, exon 3 of 3) antisense-exon (ENSMUSG00000097840.1, exon 3 of 3) 9301 ENSMUSG00000106832.1 ENSMUSG00000106832 ENSMUST00000201707 Gm42632 TEC Interval_74710 chr17 56106750 56107092 + 0 NA exon (ENSMUSG00000002831.14, exon 5 of 9) protein_coding-exon (ENSMUSG00000002831.14, exon 5 of 9) 2882 ENSMUSG00000002831.14 ENSMUSG00000002831 ENSMUST00000190703 Plin4 protein_coding Interval_156417 chr8 48009065 48009648 + 0 NA promoter-TSS (ENSMUSG00000110624.1) lincRNA-promoter-TSS (ENSMUSG00000110624.1) -223 ENSMUSG00000110624.1 ENSMUSG00000110624 ENSMUST00000212073 Gm32052 lincRNA Interval_127954 chr5 109827795 109828195 + 0 NA Intergenic Intergenic 6150 ENSMUSG00000105044.1 ENSMUSG00000105044 ENSMUST00000197379 Gm10416 TEC Interval_19693 chr10 108154895 108155201 + 0 NA Intergenic Intergenic -12616 ENSMUSG00000112401.1 ENSMUSG00000112401 ENSMUST00000219675 Gm47999 processed_pseudogene Interval_84171 chr19 8407247 8409146 + 0 NA Intergenic Intergenic -3091 ENSMUSG00000052562.15 ENSMUSG00000052562 ENSMUST00000120540 Slc22a30 protein_coding Interval_87938 chr19 57216782 57217543 + 0 NA intron (ENSMUSG00000025085.16, intron 1 of 20) protein_coding-intron (ENSMUSG00000025085.16, intron 1 of 6) -56798 ENSMUSG00000117684.1 ENSMUSG00000117684 ENSMUST00000237596 4930449E18Rik antisense Interval_82859 chr18 77560404 77561440 + 0 NA intron (ENSMUSG00000025427.15, intron 1 of 4) protein_coding-intron (ENSMUSG00000025427.15, intron 1 of 7) 47482 ENSMUSG00000117855.1 ENSMUSG00000117855 ENSMUST00000236419 Gm50197 processed_pseudogene Interval_147425 chr7 66878414 66878684 + 0 NA intron (ENSMUSG00000058145.16, intron 3 of 10) protein_coding-intron (ENSMUSG00000058145.16, intron 3 of 22) 38814 ENSMUSG00000058145.16 ENSMUSG00000058145 ENSMUST00000154103 Adamts17 protein_coding Interval_92329 chr2 58819475 58820151 + 0 NA Intergenic Intergenic -39621 ENSMUSG00000079353.2 ENSMUSG00000079353 ENSMUST00000112589 Gm11099 protein_coding Interval_92496 chr2 60124530 60125900 + 0 NA exon (ENSMUSG00000086603.1, exon 1 of 2) lincRNA-exon (ENSMUSG00000086603.1, exon 1 of 2) 119 ENSMUSG00000086603.1 ENSMUSG00000086603 ENSMUST00000131198 Gm13620 lincRNA Interval_40825 chr12 108686106 108687457 + 0 NA TTS (ENSMUSG00000021262.15) protein_coding-TTS (ENSMUSG00000021262.15) 684 ENSMUSG00000021262.15 ENSMUSG00000021262 ENSMUST00000223548 Evl protein_coding Interval_53629 chr14 60308331 60308688 + 0 NA Intergenic Intergenic 43236 ENSMUSG00000021987.9 ENSMUSG00000021987 ENSMUST00000224164 Mtmr6 protein_coding Interval_147840 chr7 74068020 74068441 + 0 NA Intergenic Intergenic -24492 ENSMUSG00000108725.1 ENSMUSG00000108725 ENSMUST00000205302 Gm45004 lincRNA Interval_166431 chr9 59434645 59435512 + 0 NA intron (ENSMUSG00000025234.11, intron 3 of 13) protein_coding-intron (ENSMUSG00000025234.11, intron 3 of 11) 37155 ENSMUSG00000090516.1 ENSMUSG00000090516 ENSMUST00000171632 Rps11-ps1 processed_pseudogene Interval_100901 chr2 173246858 173248510 + 0 NA intron (ENSMUSG00000038400.15, intron 1 of 3) protein_coding-intron (ENSMUSG00000038400.15, intron 1 of 3) 28505 ENSMUSG00000038400.15 ENSMUSG00000038400 ENSMUST00000124124 Pmepa1 protein_coding Interval_140052 chr6 113667627 113669106 + 0 NA promoter-TSS (ENSMUSG00000060477.14) protein_coding-promoter-TSS (ENSMUSG00000060477.14) 10853 ENSMUSG00000107846.1 ENSMUSG00000107846 ENSMUST00000203466 Gm43963 TEC Interval_80089 chr18 37448995 37450123 + 0 NA exon (ENSMUSG00000044043.4, exon 1 of 1) protein_coding-exon (ENSMUSG00000044043.4, exon 1 of 1) 1903 ENSMUSG00000044043.4 ENSMUSG00000044043 ENSMUST00000052387 Pcdhb14 protein_coding Interval_172244 chrX 11799199 11800165 + 0 NA Intergenic Intergenic -50802 ENSMUSG00000065825.1 ENSMUSG00000065825 ENSMUST00000083891 Gm26314 snRNA Interval_58930 chr15 40134129 40134617 + 0 NA promoter-TSS (ENSMUSG00000094112.2) protein_coding-promoter-TSS (ENSMUSG00000094112.2) 8 ENSMUSG00000094112.2 ENSMUSG00000094112 ENSMUST00000179120 9330182O14Rik protein_coding Interval_157188 chr8 67365044 67365239 + 0 NA promoter-TSS (ENSMUSG00000074292.4) lincRNA-promoter-TSS (ENSMUSG00000074292.4) -137 ENSMUSG00000074292.4 ENSMUSG00000074292 ENSMUST00000148610 Gm10660 lincRNA Interval_157804 chr8 73400266 73400704 + 0 NA Intergenic Intergenic 37119 ENSMUSG00000110450.1 ENSMUSG00000110450 ENSMUST00000212078 Gm7943 processed_pseudogene Interval_83622 chr19 3274250 3274534 + 0 NA exon (ENSMUSG00000024831.14, exon 6 of 15) protein_coding-exon (ENSMUSG00000024831.14, exon 6 of 15) 8588 ENSMUSG00000024831.14 ENSMUSG00000024831 ENSMUST00000143079 Ighmbp2 protein_coding Interval_103325 chr3 38819981 38820301 + 0 NA Intergenic Intergenic 68118 ENSMUSG00000086181.1 ENSMUSG00000086181 ENSMUST00000153659 C230034O21Rik antisense Interval_121362 chr4 155268109 155268905 + 0 NA promoter-TSS (ENSMUSG00000029053.16) protein_coding-promoter-TSS (ENSMUSG00000029053.16) 18541 ENSMUSG00000073684.13 ENSMUSG00000073684 ENSMUST00000156404 Faap20 protein_coding Interval_105163 chr3 83032661 83033208 + 0 NA TTS (ENSMUSG00000028001.16) protein_coding-TTS (ENSMUSG00000028001.16) 6719 ENSMUSG00000028001.16 ENSMUSG00000028001 ENSMUST00000166581 Fga protein_coding Interval_135942 chr6 49007942 49009407 + 0 NA Intergenic Intergenic -9058 ENSMUSG00000107656.1 ENSMUSG00000107656 ENSMUST00000203494 4930563H07Rik antisense Interval_105634 chr3 88254247 88255715 + 0 NA promoter-TSS (ENSMUSG00000104445.1) protein_coding-promoter-TSS (ENSMUSG00000104445.1) -272 ENSMUSG00000104445.1 ENSMUSG00000104445 ENSMUST00000171887 Rhbg protein_coding Interval_9179 chr1 154791699 154791902 + 0 NA intron (ENSMUSG00000004110.17, intron 1 of 3) protein_coding-intron (ENSMUSG00000004110.17, intron 1 of 3) 25141 ENSMUSG00000004110.17 ENSMUSG00000004110 ENSMUST00000186256 Cacna1e protein_coding Interval_84560 chr19 12749691 12749919 + 0 NA Intergenic Intergenic 15827 ENSMUSG00000079415.2 ENSMUSG00000079415 ENSMUST00000112933 Cntf protein_coding Interval_89790 chr2 25447148 25447415 + 0 NA TTS (ENSMUSG00000026944.18) protein_coding-TTS (ENSMUSG00000026944.18) 4502 ENSMUSG00000104741.1 ENSMUSG00000104741 ENSMUST00000199405 Mir3087 miRNA Interval_74697 chr17 56017907 56019121 + 0 NA intron (ENSMUSG00000003200.10, intron 7 of 9) protein_coding-intron (ENSMUSG00000003200.10, intron 7 of 9) -3970 ENSMUSG00000084755.1 ENSMUSG00000084755 ENSMUST00000131218 Gm16276 processed_pseudogene Interval_42661 chr13 17771663 17772703 + 0 NA TTS (ENSMUSG00000041297.8) protein_coding-TTS (ENSMUSG00000041297.8) -14858 ENSMUSG00000113140.1 ENSMUSG00000113140 ENSMUST00000220696 Gm48624 TEC Interval_133929 chr6 15755223 15755488 + 0 NA intron (ENSMUSG00000041390.18, intron 3 of 4) protein_coding-intron (ENSMUSG00000041390.18, intron 3 of 4) 34694 ENSMUSG00000041390.18 ENSMUSG00000041390 ENSMUST00000128849 Mdfic protein_coding Interval_79755 chr18 34925679 34926131 + 0 NA intron (ENSMUSG00000024360.8, intron 2 of 10) protein_coding-intron (ENSMUSG00000024360.8, intron 2 of 10) 6102 ENSMUSG00000024360.8 ENSMUSG00000024360 ENSMUST00000025218 Etf1 protein_coding Interval_18173 chr10 83224981 83225616 + 0 NA Intergenic Intergenic -67171 ENSMUSG00000088270.1 ENSMUSG00000088270 ENSMUST00000157645 Gm23122 snRNA Interval_35343 chr12 20870278 20870794 + 0 NA Intergenic Intergenic 6535 ENSMUSG00000085642.8 ENSMUSG00000085642 ENSMUST00000127917 3110053B16Rik transcribed_unprocessed_pseudogene Interval_76827 chr17 84354156 84356161 + 0 NA intron (ENSMUSG00000024251.10, intron 11 of 14) protein_coding-intron (ENSMUSG00000024251.10, intron 26 of 37) -36271 ENSMUSG00000096415.1 ENSMUSG00000096415 ENSMUST00000179017 Gm24722 snRNA Interval_48888 chr13 104431195 104431703 + 0 NA intron (ENSMUSG00000046169.10, intron 18 of 24) protein_coding-intron (ENSMUSG00000046169.10, intron 18 of 24) 143614 ENSMUSG00000046169.10 ENSMUSG00000046169 ENSMUST00000224504 Adamts6 protein_coding Interval_39378 chr12 86989655 86990980 + 0 NA intron (ENSMUSG00000048483.6, intron 1 of 2) protein_coding-intron (ENSMUSG00000048483.6, intron 1 of 2) -6482 ENSMUSG00000048483.6 ENSMUSG00000048483 ENSMUST00000095521 Zdhhc22 protein_coding Interval_157766 chr8 72887553 72887753 + 0 NA intron (ENSMUSG00000004383.18, intron 8 of 15) protein_coding-intron (ENSMUSG00000004383.18, intron 7 of 14) -92166 ENSMUSG00000110563.1 ENSMUSG00000110563 ENSMUST00000212908 Gm45791 processed_pseudogene Interval_66231 chr16 32465111 32465618 + 0 NA intron (ENSMUSG00000005615.15, intron 1 of 3) protein_coding-intron (ENSMUSG00000005615.15, intron 5 of 8) 2424 ENSMUSG00000005615.15 ENSMUSG00000005615 ENSMUST00000231920 Pcyt1a protein_coding Interval_44886 chr13 49371383 49372231 + 0 NA intron (ENSMUSG00000037933.16, intron 2 of 7) protein_coding-intron (ENSMUSG00000037933.16, intron 2 of 6) -11282 ENSMUSG00000037933.16 ENSMUSG00000037933 ENSMUST00000220723 Bicd2 protein_coding Interval_81055 chr18 53356651 53357286 + 0 NA intron (ENSMUSG00000024535.16, intron 3 of 6) protein_coding-intron (ENSMUSG00000024535.16, intron 3 of 7) 61147 ENSMUSG00000024538.8 ENSMUSG00000024538 ENSMUST00000025419 Ppic protein_coding Interval_53885 chr14 63132134 63132679 + 0 NA intron (ENSMUSG00000021939.8, intron 1 of 9) protein_coding-intron (ENSMUSG00000021939.8, intron 1 of 9) 9892 ENSMUSG00000021939.8 ENSMUSG00000021939 ENSMUST00000225540 Ctsb protein_coding Interval_108102 chr3 121506442 121507422 + 0 NA intron (ENSMUSG00000039865.8, intron 9 of 14) protein_coding-intron (ENSMUSG00000039865.8, intron 9 of 14) 20175 ENSMUSG00000039865.8 ENSMUSG00000039865 ENSMUST00000199422 Slc44a3 protein_coding Interval_95517 chr2 111122239 111123353 + 0 NA Intergenic Intergenic -16814 ENSMUSG00000079170.3 ENSMUSG00000079170 ENSMUST00000127918 Gm13941 protein_coding Interval_80879 chr18 49840738 49840991 + 0 NA intron (ENSMUSG00000037416.13, intron 2 of 42) protein_coding-intron (ENSMUSG00000037416.13, intron 2 of 42) -22906 ENSMUSG00000100134.1 ENSMUSG00000100134 ENSMUST00000186872 1700065O20Rik lincRNA Interval_9415 chr1 156932418 156932627 + 0 NA intron (ENSMUSG00000026594.14, intron 1 of 19) protein_coding-intron (ENSMUSG00000026594.14, intron 1 of 18) 7077 ENSMUSG00000026594.14 ENSMUSG00000026594 ENSMUST00000189648 Ralgps2 protein_coding Interval_98441 chr2 152375529 152376852 + 0 NA TTS (ENSMUSG00000068062.3) processed_transcript-TTS (ENSMUSG00000068062.3) 448 ENSMUSG00000059361.6 ENSMUSG00000059361 ENSMUST00000079278 Nrsn2 protein_coding Interval_154975 chr8 25429860 25430829 + 0 NA Intergenic Intergenic -1120 ENSMUSG00000110110.1 ENSMUSG00000110110 ENSMUST00000211581 Gm30978 lincRNA Interval_92048 chr2 52879920 52880124 + 0 NA intron (ENSMUSG00000036053.17, intron 1 of 26) protein_coding-intron (ENSMUSG00000036053.17, intron 1 of 26) 22162 ENSMUSG00000036053.17 ENSMUSG00000036053 ENSMUST00000050719 Fmnl2 protein_coding Interval_151775 chr7 126579151 126579566 + 0 NA TTS (ENSMUSG00000030720.16) protein_coding-TTS (ENSMUSG00000030720.16) 174 ENSMUSG00000098540.1 ENSMUSG00000098540 ENSMUST00000184825 Mir7059 miRNA Interval_167028 chr9 64651245 64653343 + 0 NA intron (ENSMUSG00000036466.17, intron 8 of 24) protein_coding-intron (ENSMUSG00000036466.17, intron 8 of 24) 73426 ENSMUSG00000004771.12 ENSMUSG00000004771 ENSMUST00000165083 Rab11a protein_coding Interval_137974 chr6 83873586 83873963 + 0 NA TTS (ENSMUSG00000079501.3) processed_pseudogene-TTS (ENSMUSG00000079501.3) 1606 ENSMUSG00000079501.3 ENSMUSG00000079501 ENSMUST00000113842 Gm5138 processed_pseudogene Interval_108928 chr3 133437827 133438718 + 0 NA Intergenic Intergenic -6449 ENSMUSG00000080506.1 ENSMUSG00000080506 ENSMUST00000116856 Gm25042 miRNA Interval_163689 chr9 24388008 24388208 + 0 NA intron (ENSMUSG00000074465.2, intron 2 of 3) antisense-intron (ENSMUSG00000074465.2, intron 2 of 3) 36990 ENSMUSG00000088104.1 ENSMUSG00000088104 ENSMUST00000157479 Gm22380 snoRNA Interval_59380 chr15 51985655 51986164 + 0 NA intron (ENSMUSG00000022314.10, intron 1 of 13) protein_coding-intron (ENSMUSG00000022314.10, intron 1 of 13) 5601 ENSMUSG00000022314.10 ENSMUSG00000022314 ENSMUST00000226529 Rad21 protein_coding Interval_5129 chr1 85894238 85895859 + 0 NA intron (ENSMUSG00000026223.15, intron 1 of 4) protein_coding-intron (ENSMUSG00000026223.15, intron 1 of 5) 429 ENSMUSG00000026223.15 ENSMUSG00000026223 ENSMUST00000139837 Itm2c protein_coding Interval_101108 chr2 178022857 178024022 + 0 NA promoter-TSS (ENSMUSG00000074519.11) protein_coding-promoter-TSS (ENSMUSG00000074519.11) 60 ENSMUSG00000074519.11 ENSMUSG00000074519 ENSMUST00000108926 Zfp971 protein_coding Interval_28521 chr11 76476529 76477665 + 0 NA intron (ENSMUSG00000017631.19, intron 4 of 22) protein_coding-intron (ENSMUSG00000017631.19, intron 4 of 22) -36972 ENSMUSG00000080763.2 ENSMUSG00000080763 ENSMUST00000119724 Gm12341 processed_pseudogene Interval_20849 chr10 121501236 121501860 + 0 NA Intergenic Intergenic -3803 ENSMUSG00000111926.1 ENSMUSG00000111926 ENSMUST00000219800 Gm46204 lincRNA Interval_69183 chr16 91191031 91191300 + 0 NA Intergenic Intergenic -15831 ENSMUSG00000116713.1 ENSMUSG00000116713 ENSMUST00000231233 Gm49613 processed_pseudogene Interval_40510 chr12 105371520 105372120 + 0 NA intron (ENSMUSG00000097929.9, intron 2 of 3) protein_coding-intron (ENSMUSG00000097929.9, intron 2 of 2) -32199 ENSMUSG00000114181.1 ENSMUSG00000114181 ENSMUST00000222653 Gm46376 lincRNA Interval_80150 chr18 37883514 37884176 + 0 NA intron (ENSMUSG00000024456.16, intron 16 of 25) protein_coding-intron (ENSMUSG00000024456.16, intron 18 of 27) 14097 ENSMUSG00000024456.16 ENSMUSG00000024456 ENSMUST00000129688 Diaph1 protein_coding Interval_62041 chr15 86064568 86065281 + 0 NA intron (ENSMUSG00000035900.18, intron 1 of 18) protein_coding-intron (ENSMUSG00000035900.18, intron 1 of 18) -9809 ENSMUSG00000035900.18 ENSMUSG00000035900 ENSMUST00000147286 Gramd4 protein_coding Interval_47437 chr13 84242836 84243124 + 0 NA intron (ENSMUSG00000035762.11, intron 1 of 1) protein_coding-intron (ENSMUSG00000035762.11, intron 1 of 11) -8291 ENSMUSG00000035762.11 ENSMUSG00000035762 ENSMUST00000225708 Tmem161b protein_coding Interval_53463 chr14 57684522 57684859 + 0 NA intron (ENSMUSG00000114942.1, intron 6 of 8) protein_coding-intron (ENSMUSG00000114942.1, intron 6 of 8) -13119 ENSMUSG00000064525.1 ENSMUSG00000064525 ENSMUST00000082591 Gm26440 snoRNA Interval_119296 chr4 136713532 136714834 + 0 NA intron (ENSMUSG00000028664.14, intron 3 of 15) protein_coding-intron (ENSMUSG00000028664.14, intron 3 of 15) -20143 ENSMUSG00000028664.14 ENSMUSG00000028664 ENSMUST00000144573 Ephb2 protein_coding Interval_87329 chr19 47730735 47732206 + 0 NA promoter-TSS (ENSMUSG00000025066.10) protein_coding-promoter-TSS (ENSMUSG00000025066.10) -734 ENSMUSG00000025066.10 ENSMUSG00000025066 ENSMUST00000237695 Sfr1 protein_coding Interval_55058 chr14 77566675 77567217 + 0 NA intron (ENSMUSG00000022012.9, intron 6 of 6) protein_coding-intron (ENSMUSG00000022012.9, intron 7 of 18) -5910 ENSMUSG00000022012.9 ENSMUSG00000022012 ENSMUST00000228845 Enox1 protein_coding Interval_31766 chr11 102725391 102725899 + 0 NA Intergenic Intergenic 6418 ENSMUSG00000084375.1 ENSMUSG00000084375 ENSMUST00000120601 Gm11637 processed_pseudogene Interval_114621 chr4 83261882 83262191 + 0 NA intron (ENSMUSG00000038172.14, intron 3 of 6) protein_coding-intron (ENSMUSG00000038172.14, intron 4 of 6) 23133 ENSMUSG00000038172.14 ENSMUSG00000038172 ENSMUST00000148811 Ttc39b protein_coding Interval_123328 chr5 31480191 31480863 + 0 NA exon (ENSMUSG00000062761.7, exon 14 of 14) protein_coding-exon (ENSMUSG00000062761.7, exon 14 of 14) -5213 ENSMUSG00000029138.4 ENSMUSG00000029138 ENSMUST00000031020 4930548H24Rik protein_coding Interval_120396 chr4 148352876 148353216 + 0 NA Intergenic Intergenic 6414 ENSMUSG00000086326.1 ENSMUSG00000086326 ENSMUST00000138802 Gm13200 lincRNA Interval_130296 chr5 125492500 125493199 + 0 NA intron (ENSMUSG00000029482.4, intron 4 of 17) protein_coding-intron (ENSMUSG00000029482.4, intron 4 of 17) 13472 ENSMUSG00000098350.1 ENSMUSG00000098350 ENSMUST00000184258 Gm27551 miRNA Interval_33757 chr11 118298049 118299576 + 0 NA Intergenic Intergenic -8740 ENSMUSG00000033909.17 ENSMUSG00000033909 ENSMUST00000151433 Usp36 protein_coding Interval_134178 chr6 22385316 22385679 + 0 NA Intergenic Intergenic -41584 ENSMUSG00000029672.16 ENSMUSG00000029672 ENSMUST00000168965 Fam3c protein_coding Interval_27115 chr11 63023509 63024483 + 0 NA Intergenic Intergenic -19868 ENSMUSG00000087604.7 ENSMUSG00000087604 ENSMUST00000130177 Cdrt4os1 antisense Interval_147605 chr7 69316050 69316225 + 0 NA Intergenic Intergenic 56542 ENSMUSG00000109400.1 ENSMUSG00000109400 ENSMUST00000207782 Gm44533 processed_pseudogene Interval_167824 chr9 72887455 72887791 + 0 NA intron (ENSMUSG00000036030.9, intron 11 of 19) protein_coding-intron (ENSMUSG00000036030.9, intron 11 of 19) -1422 ENSMUSG00000102330.1 ENSMUSG00000102330 ENSMUST00000193259 Gm37234 TEC Interval_45779 chr13 58029115 58030329 + 0 NA intron (ENSMUSG00000014164.15, intron 8 of 14) protein_coding-intron (ENSMUSG00000014164.15, intron 10 of 16) -6522 ENSMUSG00000077962.1 ENSMUSG00000077962 ENSMUST00000104769 Mir874 miRNA Interval_72922 chr17 33523556 33525419 + 0 NA intron (ENSMUSG00000024299.17, intron 1 of 2) protein_coding-intron (ENSMUSG00000024299.17, intron 1 of 24) 277 ENSMUSG00000024299.17 ENSMUSG00000024299 ENSMUST00000174666 Adamts10 protein_coding Interval_57069 chr15 5461828 5462352 + 0 NA Intergenic Intergenic -2085 ENSMUSG00000115116.1 ENSMUSG00000115116 ENSMUST00000226389 Gm46496 processed_pseudogene Interval_5859 chr1 92706862 92708377 + 0 NA Intergenic Intergenic 9583 ENSMUSG00000100546.1 ENSMUSG00000100546 ENSMUST00000188188 Gm29483 lincRNA Interval_96124 chr2 119917063 119918263 + 0 NA exon (ENSMUSG00000033943.15, exon 3 of 3) protein_coding-exon (ENSMUSG00000033943.15, exon 3 of 3) 20358 ENSMUSG00000033943.15 ENSMUSG00000033943 ENSMUST00000131396 Mga protein_coding Interval_161823 chr8 123022564 123022770 + 0 NA intron (ENSMUSG00000035569.17, intron 1 of 2) protein_coding-intron (ENSMUSG00000035569.17, intron 1 of 12) 19610 ENSMUSG00000035569.17 ENSMUSG00000035569 ENSMUST00000212937 Ankrd11 protein_coding Interval_87569 chr19 53499427 53501599 + 0 NA Intergenic Intergenic 17019 ENSMUSG00000118378.1 ENSMUSG00000118378 ENSMUST00000235451 Gm50393 TEC Interval_112018 chr4 33262955 33263235 + 0 NA intron (ENSMUSG00000040128.9, intron 1 of 1) protein_coding-intron (ENSMUSG00000040128.9, intron 1 of 1) -15520 ENSMUSG00000040128.9 ENSMUSG00000040128 ENSMUST00000137589 Pnrc1 protein_coding Interval_81888 chr18 65628721 65629337 + 0 NA intron (ENSMUSG00000042439.13, intron 1 of 1) protein_coding-intron (ENSMUSG00000042439.13, intron 3 of 5) -4103 ENSMUSG00000118234.1 ENSMUSG00000118234 ENSMUST00000183157 Gm50115 antisense Interval_24893 chr11 40919701 40919897 + 0 NA Intergenic Intergenic 115324 ENSMUSG00000065916.1 ENSMUSG00000065916 ENSMUST00000083982 Gm24446 snRNA Interval_114977 chr4 87962886 87963145 + 0 NA intron (ENSMUSG00000028496.17, intron 2 of 4) protein_coding-intron (ENSMUSG00000028496.17, intron 2 of 10) -70486 ENSMUSG00000084809.1 ENSMUSG00000084809 ENSMUST00000130576 Gm12631 antisense Interval_133003 chr5 149216792 149218039 + 0 NA Intergenic Intergenic -19739 ENSMUSG00000100783.1 ENSMUSG00000100783 ENSMUST00000189639 2310047D07Rik lincRNA Interval_68359 chr16 74134512 74135198 + 0 NA intron (ENSMUSG00000052516.19, intron 2 of 21) protein_coding-intron (ENSMUSG00000052516.19, intron 2 of 25) 43979 ENSMUSG00000116740.1 ENSMUSG00000116740 ENSMUST00000231533 Gm49659 TEC Interval_108278 chr3 123235596 123237176 + 0 NA promoter-TSS (ENSMUSG00000050315.14) protein_coding-promoter-TSS (ENSMUSG00000050315.14) -239 ENSMUSG00000050315.14 ENSMUSG00000050315 ENSMUST00000184403 Synpo2 protein_coding Interval_59660 chr15 57651299 57651630 + 0 NA Intergenic Intergenic -44265 ENSMUSG00000071757.10 ENSMUSG00000071757 ENSMUST00000160990 Zhx2 protein_coding Interval_41113 chr12 111263399 111263638 + 0 NA TTS (ENSMUSG00000021277.16) protein_coding-TTS (ENSMUSG00000021277.16) -10996 ENSMUSG00000021278.7 ENSMUSG00000021278 ENSMUST00000220551 Amn protein_coding Interval_127960 chr5 109859845 109861133 + 0 NA Intergenic Intergenic -25742 ENSMUSG00000097140.1 ENSMUSG00000097140 ENSMUST00000181101 Gm26779 lincRNA Interval_165558 chr9 49485371 49486430 + 0 NA intron (ENSMUSG00000040219.4, intron 1 of 8) protein_coding-intron (ENSMUSG00000040219.4, intron 1 of 21) 315 ENSMUSG00000040219.4 ENSMUSG00000040219 ENSMUST00000146666 Ttc12 protein_coding Interval_89359 chr2 19757145 19757317 + 0 NA Intergenic Intergenic 65943 ENSMUSG00000077342.1 ENSMUSG00000077342 ENSMUST00000104154 Gm24670 snoRNA Interval_80897 chr18 49991872 49993124 + 0 NA intron (ENSMUSG00000062210.13, intron 1 of 3) protein_coding-intron (ENSMUSG00000062210.13, intron 1 of 1) -54242 ENSMUSG00000062210.13 ENSMUSG00000062210 ENSMUST00000148159 Tnfaip8 protein_coding Interval_128773 chr5 115180722 115181699 + 0 NA promoter-TSS (ENSMUSG00000029544.16) protein_coding-promoter-TSS (ENSMUSG00000029544.16) 2934 ENSMUSG00000029544.16 ENSMUSG00000029544 ENSMUST00000201900 Cabp1 protein_coding Interval_118703 chr4 133282320 133283042 + 0 NA Intergenic Intergenic -1369 ENSMUSG00000083241.1 ENSMUSG00000083241 ENSMUST00000120792 Gm13259 processed_pseudogene Interval_151489 chr7 123045638 123045869 + 0 NA intron (ENSMUSG00000109814.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000109814.1, intron 1 of 3) 14338 ENSMUSG00000109814.1 ENSMUSG00000109814 ENSMUST00000209402 Gm45847 lincRNA Interval_117713 chr4 125726443 125727005 + 0 NA Intergenic Intergenic 195693 ENSMUSG00000085562.7 ENSMUSG00000085562 ENSMUST00000144539 2610028E06Rik lincRNA Interval_19931 chr10 111335840 111336797 + 0 NA promoter-TSS (ENSMUSG00000112246.1) lincRNA-promoter-TSS (ENSMUSG00000112246.1) -806 ENSMUSG00000112246.1 ENSMUSG00000112246 ENSMUST00000219123 Gm40761 lincRNA Interval_62670 chr15 96148820 96149082 + 0 NA intron (ENSMUSG00000097536.2, intron 5 of 6) lincRNA-intron (ENSMUSG00000097536.2, intron 5 of 6) -94126 ENSMUSG00000078925.11 ENSMUSG00000078925 ENSMUST00000140253 D030018L15Rik lincRNA Interval_11614 chr1 183315547 183316394 + 0 NA intron (ENSMUSG00000042901.10, intron 6 of 7) protein_coding-intron (ENSMUSG00000042901.10, intron 6 of 9) -6143 ENSMUSG00000042901.10 ENSMUSG00000042901 ENSMUST00000195268 Aida protein_coding Interval_140186 chr6 115070639 115071054 + 0 NA Intergenic Intergenic -28708 ENSMUSG00000089134.1 ENSMUSG00000089134 ENSMUST00000158509 Gm24767 miRNA Interval_44800 chr13 48726620 48726979 + 0 NA Intergenic Intergenic 36782 ENSMUSG00000113297.1 ENSMUSG00000113297 ENSMUST00000222192 Rpl17-ps6 processed_pseudogene Interval_3107 chr1 53388334 53388829 + 0 NA Intergenic Intergenic -1834 ENSMUSG00000100069.1 ENSMUSG00000100069 ENSMUST00000190697 Gm6801 unprocessed_pseudogene Interval_153316 chr7 143572268 143572765 + 0 NA intron (ENSMUSG00000010755.17, intron 1 of 2) protein_coding-intron (ENSMUSG00000010755.17, intron 10 of 22) -1757 ENSMUSG00000098593.1 ENSMUSG00000098593 ENSMUST00000184553 Mir7064 miRNA Interval_96348 chr2 121851543 121851840 + 0 NA Intergenic Intergenic 15026 ENSMUSG00000086913.1 ENSMUSG00000086913 ENSMUST00000131514 Gm14019 antisense Interval_14044 chr10 25945709 25946651 + 0 NA intron (ENSMUSG00000049420.9, intron 1 of 2) protein_coding-intron (ENSMUSG00000049420.9, intron 1 of 2) 46901 ENSMUSG00000112324.1 ENSMUSG00000112324 ENSMUST00000219283 Gm47939 lincRNA Interval_134764 chr6 31306967 31307625 + 0 NA intron (ENSMUSG00000087380.7, intron 2 of 3) processed_transcript-intron (ENSMUSG00000087380.7, intron 3 of 6) 14762 ENSMUSG00000087380.7 ENSMUSG00000087380 ENSMUST00000124811 2210408F21Rik processed_transcript Interval_156173 chr8 45507654 45508119 + 0 NA promoter-TSS (ENSMUSG00000031626.18) protein_coding-promoter-TSS (ENSMUSG00000031626.18) 32229 ENSMUSG00000109665.1 ENSMUSG00000109665 ENSMUST00000209900 Gm45458 TEC Interval_154631 chr8 22154590 22155401 + 0 NA intron (ENSMUSG00000031478.16, intron 6 of 14) protein_coding-intron (ENSMUSG00000031478.16, intron 7 of 15) 7499 ENSMUSG00000031478.16 ENSMUSG00000031478 ENSMUST00000151371 Nek3 protein_coding Interval_60283 chr15 72206099 72206371 + 0 NA intron (ENSMUSG00000116068.1, intron 2 of 3) lincRNA-intron (ENSMUSG00000116068.1, intron 2 of 3) 44889 ENSMUSG00000116068.1 ENSMUSG00000116068 ENSMUST00000229509 Gm49457 lincRNA Interval_139162 chr6 96589195 96589909 + 0 NA intron (ENSMUSG00000059187.12, intron 3 of 4) protein_coding-intron (ENSMUSG00000059187.12, intron 2 of 3) -28688 ENSMUSG00000077598.1 ENSMUSG00000077598 ENSMUST00000104410 Gm26011 snRNA Interval_160475 chr8 109808022 109808702 + 0 NA intron (ENSMUSG00000031731.16, intron 2 of 23) protein_coding-intron (ENSMUSG00000031731.16, intron 2 of 22) -30933 ENSMUSG00000077549.1 ENSMUSG00000077549 ENSMUST00000104361 Snord71 snoRNA Interval_108052 chr3 121125006 121125278 + 0 NA Intergenic Intergenic -43514 ENSMUSG00000106329.1 ENSMUSG00000106329 ENSMUST00000199790 Gm10652 TEC Interval_34986 chr12 16356640 16357007 + 0 NA Intergenic Intergenic -124596 ENSMUSG00000113892.1 ENSMUSG00000113892 ENSMUST00000220475 Gm48605 lincRNA Interval_31980 chr11 104298768 104298978 + 0 NA exon (ENSMUSG00000018411.17, exon 5 of 13) protein_coding-exon (ENSMUSG00000018411.17, exon 5 of 13) -39512 ENSMUSG00000085134.1 ENSMUSG00000085134 ENSMUST00000137561 Gm11659 antisense Interval_91809 chr2 49764376 49764813 + 0 NA intron (ENSMUSG00000026764.15, intron 25 of 25) protein_coding-intron (ENSMUSG00000026764.15, intron 25 of 25) -23137 ENSMUSG00000026765.12 ENSMUSG00000026765 ENSMUST00000129867 Lypd6b protein_coding Interval_48389 chr13 98694639 98695933 + 0 NA promoter-TSS (ENSMUSG00000052485.7) protein_coding-promoter-TSS (ENSMUSG00000052485.7) -518 ENSMUSG00000052485.7 ENSMUSG00000052485 ENSMUST00000148950 Tmem171 protein_coding Interval_160203 chr8 107113221 107113750 + 0 NA Intergenic Intergenic -5625 ENSMUSG00000102271.1 ENSMUSG00000102271 ENSMUST00000193420 C630050I24Rik TEC Interval_55978 chr14 103555295 103557257 + 0 NA intron (ENSMUSG00000022123.9, intron 8 of 29) protein_coding-intron (ENSMUSG00000022123.9, intron 8 of 30) 42934 ENSMUSG00000022123.9 ENSMUSG00000022123 ENSMUST00000095576 Scel protein_coding Interval_66915 chr16 38496610 38497528 + 0 NA TTS (ENSMUSG00000075122.5) protein_coding-TTS (ENSMUSG00000075122.5) -15496 ENSMUSG00000081605.1 ENSMUSG00000081605 ENSMUST00000117656 Gm15953 processed_pseudogene Interval_168679 chr9 85772261 85772962 + 0 NA promoter-TSS (ENSMUSG00000065706.1) snoRNA-promoter-TSS (ENSMUSG00000065706.1) -131 ENSMUSG00000065706.1 ENSMUSG00000065706 ENSMUST00000083772 Gm22830 snoRNA Interval_120066 chr4 141625130 141625664 + 0 NA TTS (ENSMUSG00000028917.14) protein_coding-TTS (ENSMUSG00000028917.14) -1576 ENSMUSG00000040740.7 ENSMUSG00000040740 ENSMUST00000038661 Slc25a34 protein_coding Interval_41506 chr12 115472919 115473166 + 0 NA Intergenic Intergenic -2995 ENSMUSG00000105242.1 ENSMUSG00000105242 ENSMUST00000196892 Gm9236 processed_pseudogene Interval_43247 chr13 27028287 27029576 + 0 NA intron (ENSMUSG00000114646.1, intron 1 of 1) antisense-intron (ENSMUSG00000114646.1, intron 1 of 1) -28643 ENSMUSG00000021342.14 ENSMUSG00000021342 ENSMUST00000018061 Prl protein_coding Interval_172699 chrX 43429972 43431246 + 0 NA Intergenic Intergenic -1606 ENSMUSG00000016150.15 ENSMUSG00000016150 ENSMUST00000125231 Tenm1 protein_coding Interval_97179 chr2 132060945 132062213 + 0 NA intron (ENSMUSG00000027340.15, intron 3 of 3) protein_coding-intron (ENSMUSG00000027340.15, intron 13 of 15) 16429 ENSMUSG00000027340.15 ENSMUSG00000027340 ENSMUST00000128899 Slc23a2 protein_coding Interval_56384 chr14 118309636 118309935 + 0 NA Intergenic Intergenic 9795 ENSMUSG00000088095.1 ENSMUSG00000088095 ENSMUST00000157470 Gm23669 snoRNA Interval_169426 chr9 97148228 97148455 + 0 NA Intergenic Intergenic -30838 ENSMUSG00000101502.1 ENSMUSG00000101502 ENSMUST00000190579 Rpl7a-ps10 processed_pseudogene Interval_139679 chr6 106799480 106800397 + 0 NA promoter-TSS (ENSMUSG00000005362.14) protein_coding-promoter-TSS (ENSMUSG00000005362.14) 139 ENSMUSG00000005362.14 ENSMUSG00000005362 ENSMUST00000204230 Crbn protein_coding Interval_112999 chr4 46705833 46706665 + 0 NA intron (ENSMUSG00000039809.10, intron 13 of 18) protein_coding-intron (ENSMUSG00000039809.10, intron 13 of 18) -56040 ENSMUSG00000039813.14 ENSMUSG00000039813 ENSMUST00000107750 Tbc1d2 protein_coding Interval_131296 chr5 136231245 136232448 + 0 NA TTS (ENSMUSG00000005057.13) protein_coding-TTS (ENSMUSG00000005057.13) -9184 ENSMUSG00000005057.13 ENSMUSG00000005057 ENSMUST00000196245 Sh2b2 protein_coding Interval_113320 chr4 53451740 53452260 + 0 NA intron (ENSMUSG00000028412.17, intron 1 of 3) protein_coding-intron (ENSMUSG00000028412.17, intron 1 of 15) 11329 ENSMUSG00000028412.17 ENSMUSG00000028412 ENSMUST00000133582 Slc44a1 protein_coding Interval_89095 chr2 16260414 16261730 + 0 NA Intergenic Intergenic -237647 ENSMUSG00000103865.1 ENSMUSG00000103865 ENSMUST00000193596 Gm37416 TEC Interval_32647 chr11 109383698 109384657 + 0 NA intron (ENSMUSG00000020611.14, intron 2 of 3) protein_coding-intron (ENSMUSG00000020611.14, intron 2 of 3) -20934 ENSMUSG00000056687.9 ENSMUSG00000056687 ENSMUST00000190563 Gm11696 antisense Interval_102379 chr3 22845211 22845426 + 0 NA Intergenic Intergenic 33111 ENSMUSG00000102233.1 ENSMUSG00000102233 ENSMUST00000194174 Gm37889 TEC Interval_121451 chr4 155891124 155892748 + 0 NA promoter-TSS (ENSMUSG00000029033.16) protein_coding-promoter-TSS (ENSMUSG00000029033.16) -181 ENSMUSG00000051557.15 ENSMUSG00000051557 ENSMUST00000130146 Pusl1 protein_coding Interval_24433 chr11 33221645 33222785 + 0 NA TTS (ENSMUSG00000087501.1) lincRNA-TTS (ENSMUSG00000087501.1) 18160 ENSMUSG00000087501.1 ENSMUSG00000087501 ENSMUST00000131851 Gm12116 lincRNA Interval_55121 chr14 78283191 78283677 + 0 NA intron (ENSMUSG00000022015.8, intron 4 of 4) protein_coding-intron (ENSMUSG00000022015.8, intron 4 of 4) 24609 ENSMUSG00000022015.8 ENSMUSG00000022015 ENSMUST00000022592 Tnfsf11 protein_coding Interval_55181 chr14 79106822 79107386 + 0 NA promoter-TSS (ENSMUSG00000115637.1) processed_pseudogene-promoter-TSS (ENSMUSG00000115637.1) -703 ENSMUSG00000115637.1 ENSMUSG00000115637 ENSMUST00000227710 Gm30970 processed_pseudogene Interval_55519 chr14 90209374 90210744 + 0 NA intron (ENSMUSG00000115001.1, intron 5 of 8) lincRNA-intron (ENSMUSG00000115001.1, intron 5 of 8) 83168 ENSMUSG00000115001.1 ENSMUSG00000115001 ENSMUST00000227263 4930474H20Rik lincRNA Interval_31898 chr11 103689029 103689636 + 0 NA intron (ENSMUSG00000020946.13, intron 1 of 4) protein_coding-intron (ENSMUSG00000020946.13, intron 1 of 5) 8366 ENSMUSG00000020946.13 ENSMUSG00000020946 ENSMUST00000145265 Gosr2 protein_coding Interval_93754 chr2 76616265 76616469 + 0 NA Intergenic Intergenic 24366 ENSMUSG00000002731.6 ENSMUSG00000002731 ENSMUST00000140493 Prkra protein_coding Interval_130531 chr5 128598579 128601855 + 0 NA promoter-TSS (ENSMUSG00000081683.5) protein_coding-promoter-TSS (ENSMUSG00000081683.5) 470 ENSMUSG00000072591.10 ENSMUSG00000072591 ENSMUST00000126472 Fzd10os lincRNA Interval_36018 chr12 33333521 33334358 + 0 NA intron (ENSMUSG00000020564.17, intron 2 of 8) protein_coding-intron (ENSMUSG00000020564.17, intron 2 of 7) 19539 ENSMUSG00000020564.17 ENSMUSG00000020564 ENSMUST00000142184 Atxn7l1 protein_coding Interval_103621 chr3 51249615 51250367 + 0 NA TTS (ENSMUSG00000023087.15) protein_coding-TTS (ENSMUSG00000023087.15) 6583 ENSMUSG00000023087.15 ENSMUSG00000023087 ENSMUST00000193018 Noct protein_coding Interval_105343 chr3 85194641 85195475 + 0 NA TTS (ENSMUSG00000102703.1) TEC-TTS (ENSMUSG00000102703.1) 1389 ENSMUSG00000102703.1 ENSMUSG00000102703 ENSMUST00000191953 Gm38313 TEC Interval_26847 chr11 61027290 61027673 + 0 NA intron (ENSMUSG00000042529.14, intron 1 of 1) protein_coding-intron (ENSMUSG00000042529.14, intron 1 of 1) -38323 ENSMUSG00000042529.14 ENSMUSG00000042529 ENSMUST00000108717 Kcnj12 protein_coding Interval_83815 chr19 4838670 4839932 + 0 NA promoter-TSS (ENSMUSG00000034108.6) protein_coding-promoter-TSS (ENSMUSG00000034108.6) -65 ENSMUSG00000067872.2 ENSMUSG00000067872 ENSMUST00000088653 Ccdc87 protein_coding Interval_72662 chr17 31393285 31393708 + 0 NA intron (ENSMUSG00000041119.12, intron 1 of 13) protein_coding-intron (ENSMUSG00000041119.12, intron 1 of 18) 7239 ENSMUSG00000041119.12 ENSMUSG00000041119 ENSMUST00000236367 Pde9a protein_coding Interval_9215 chr1 155111199 155112180 + 0 NA Intergenic Intergenic -12053 ENSMUSG00000056708.5 ENSMUSG00000056708 ENSMUST00000055322 Ier5 protein_coding Interval_12279 chr1 191352198 191353436 + 0 NA exon (ENSMUSG00000026626.11, exon 13 of 13) protein_coding-exon (ENSMUSG00000026626.11, exon 13 of 13) 26905 ENSMUSG00000026627.7 ENSMUSG00000026627 ENSMUST00000027940 Pacc1 protein_coding Interval_121073 chr4 152581884 152584050 + 0 NA Intergenic Intergenic 95036 ENSMUSG00000083078.1 ENSMUSG00000083078 ENSMUST00000118685 Gm13172 processed_pseudogene Interval_97652 chr2 142218802 142219045 + 0 NA intron (ENSMUSG00000068205.14, intron 6 of 13) protein_coding-intron (ENSMUSG00000068205.14, intron 11 of 17) 42316 ENSMUSG00000068205.14 ENSMUSG00000068205 ENSMUST00000156619 Macrod2 protein_coding Interval_71402 chr17 23550047 23551049 + 0 NA promoter-TSS (ENSMUSG00000117322.1) antisense-promoter-TSS (ENSMUSG00000117322.1) -251 ENSMUSG00000117322.1 ENSMUSG00000117322 ENSMUST00000233076 6330415G19Rik antisense Interval_138338 chr6 87383811 87384851 + 0 NA intron (ENSMUSG00000030048.5, intron 5 of 5) protein_coding-intron (ENSMUSG00000030048.5, intron 5 of 5) 4604 ENSMUSG00000030048.5 ENSMUSG00000030048 ENSMUST00000032127 Gkn3 protein_coding Interval_124330 chr5 44052611 44053282 + 0 NA intron (ENSMUSG00000029086.15, intron 4 of 23) protein_coding-intron (ENSMUSG00000029086.15, intron 3 of 21) -15281 ENSMUSG00000029086.15 ENSMUSG00000029086 ENSMUST00000198218 Prom1 protein_coding Interval_12035 chr1 188998105 188998332 + 0 NA promoter-TSS (ENSMUSG00000026608.13) protein_coding-promoter-TSS (ENSMUSG00000026608.13) 9623 ENSMUSG00000026608.13 ENSMUSG00000026608 ENSMUST00000193273 Kctd3 protein_coding Interval_159606 chr8 95770559 95771506 + 0 NA intron (ENSMUSG00000036550.16, intron 7 of 47) protein_coding-intron (ENSMUSG00000036550.16, intron 7 of 47) 7498 ENSMUSG00000110556.1 ENSMUSG00000110556 ENSMUST00000212863 Gm45762 TEC Interval_49686 chr13 113989244 113989657 + 0 NA intron (ENSMUSG00000042348.10, intron 5 of 5) protein_coding-intron (ENSMUSG00000042348.10, intron 4 of 4) 130966 ENSMUSG00000114696.1 ENSMUSG00000114696 ENSMUST00000223997 Gm47479 TEC Interval_162097 chr8 125066808 125067363 + 0 NA intron (ENSMUSG00000043051.17, intron 1 of 2) protein_coding-intron (ENSMUSG00000043051.17, intron 1 of 12) 3070 ENSMUSG00000080516.1 ENSMUSG00000080516 ENSMUST00000116866 Gm22197 miRNA Interval_39245 chr12 86160997 86161249 + 0 NA intron (ENSMUSG00000007867.9, intron 5 of 8) protein_coding-intron (ENSMUSG00000007867.9, intron 4 of 7) -8218 ENSMUSG00000097543.1 ENSMUSG00000097543 ENSMUST00000181667 Gm805 lincRNA Interval_81700 chr18 63677504 63678878 + 0 NA intron (ENSMUSG00000024583.3, intron 3 of 7) protein_coding-intron (ENSMUSG00000024583.3, intron 3 of 8) 30603 ENSMUSG00000024583.3 ENSMUSG00000024583 ENSMUST00000236253 Txnl1 protein_coding Interval_81236 chr18 56673987 56674570 + 0 NA Intergenic Intergenic 6500 ENSMUSG00000118275.1 ENSMUSG00000118275 ENSMUST00000235398 Gm50289 processed_pseudogene Interval_44337 chr13 43837574 43838485 + 0 NA Intergenic Intergenic -4409 ENSMUSG00000114192.1 ENSMUSG00000114192 ENSMUST00000220913 Gm33115 lincRNA Interval_24085 chr11 30104057 30104583 + 0 NA intron (ENSMUSG00000020315.18, intron 1 of 1) protein_coding-intron (ENSMUSG00000020315.18, intron 33 of 35) -2074 ENSMUSG00000101872.1 ENSMUSG00000101872 ENSMUST00000186216 Gm29237 antisense Interval_70213 chr17 6751051 6751957 + 0 NA intron (ENSMUSG00000052397.8, intron 6 of 12) protein_coding-intron (ENSMUSG00000052397.8, intron 6 of 12) -8683 ENSMUSG00000052397.8 ENSMUSG00000052397 ENSMUST00000131131 Ezr protein_coding Interval_19652 chr10 107122810 107124277 + 0 NA promoter-TSS (ENSMUSG00000035948.13) protein_coding-promoter-TSS (ENSMUSG00000035948.13) 40 ENSMUSG00000035948.13 ENSMUSG00000035948 ENSMUST00000065567 Acss3 protein_coding Interval_78214 chr18 10236468 10236727 + 0 NA promoter-TSS (ENSMUSG00000117492.1) transcribed_processed_pseudogene-promoter-TSS (ENSMUSG00000117492.1) 19554 ENSMUSG00000117492.1 ENSMUSG00000117492 ENSMUST00000234629 Gm19052 transcribed_processed_pseudogene Interval_58503 chr15 35273074 35273769 + 0 NA exon (ENSMUSG00000115345.1, exon 5 of 5) lincRNA-exon (ENSMUSG00000115345.1, exon 5 of 5) -22690 ENSMUSG00000022330.5 ENSMUSG00000022330 ENSMUST00000228152 Osr2 protein_coding Interval_81243 chr18 56717446 56718725 + 0 NA intron (ENSMUSG00000024590.8, intron 1 of 10) protein_coding-intron (ENSMUSG00000024590.8, intron 1 of 10) -10356 ENSMUSG00000024590.8 ENSMUSG00000024590 ENSMUST00000128651 Lmnb1 protein_coding Interval_54970 chr14 76576003 76576271 + 0 NA Intergenic Intergenic -19248 ENSMUSG00000052584.10 ENSMUSG00000052584 ENSMUST00000228524 Serp2 protein_coding Interval_82127 chr18 67885584 67885841 + 0 NA TTS (ENSMUSG00000024542.9) protein_coding-TTS (ENSMUSG00000024542.9) 15385 ENSMUSG00000024542.9 ENSMUSG00000024542 ENSMUST00000225589 Cep192 protein_coding Interval_140441 chr6 118121135 118121375 + 0 NA intron (ENSMUSG00000042042.14, intron 2 of 5) protein_coding-intron (ENSMUSG00000042042.14, intron 4 of 7) 5151 ENSMUSG00000042042.14 ENSMUSG00000042042 ENSMUST00000136265 Csgalnact2 protein_coding Interval_127812 chr5 107993374 107993878 + 0 NA Intergenic Intergenic -8634 ENSMUSG00000084855.2 ENSMUSG00000084855 ENSMUST00000117916 Gm9850 processed_pseudogene Interval_28944 chr11 79440462 79441346 + 0 NA exon (ENSMUSG00000020716.16, exon 18 of 58) protein_coding-exon (ENSMUSG00000020716.16, exon 18 of 58) 11543 ENSMUSG00000082529.1 ENSMUSG00000082529 ENSMUST00000118691 Gm11199 processed_pseudogene Interval_58847 chr15 38562569 38563738 + 0 NA intron (ENSMUSG00000102106.2, intron 2 of 2) lincRNA-intron (ENSMUSG00000102106.2, intron 2 of 2) -10843 ENSMUSG00000115587.1 ENSMUSG00000115587 ENSMUST00000226494 Gm29697 processed_pseudogene Interval_72677 chr17 31498556 31498804 + 0 NA TTS (ENSMUSG00000024037.13) protein_coding-TTS (ENSMUSG00000024037.13) -11311 ENSMUSG00000118390.1 ENSMUSG00000118390 ENSMUST00000237599 Gm50102 TEC Interval_98066 chr2 147364820 147366051 + 0 NA intron (ENSMUSG00000037034.16, intron 2 of 2) protein_coding-intron (ENSMUSG00000037034.16, intron 1 of 4) -2847 ENSMUSG00000037034.16 ENSMUSG00000037034 ENSMUST00000156584 Pax1 protein_coding Interval_38161 chr12 76061219 76061450 + 0 NA intron (ENSMUSG00000063450.14, intron 2 of 4) protein_coding-intron (ENSMUSG00000063450.14, intron 93 of 115) 91293 ENSMUSG00000046580.10 ENSMUSG00000046580 ENSMUST00000121461 Gm7862 processed_pseudogene Interval_25589 chr11 49980158 49980949 + 0 NA TTS (ENSMUSG00000020374.16) protein_coding-TTS (ENSMUSG00000020374.16) 16768 ENSMUSG00000020374.16 ENSMUSG00000020374 ENSMUST00000109172 Rasgef1c protein_coding Interval_165088 chr9 44497241 44499534 + 0 NA promoter-TSS (ENSMUSG00000063382.6) protein_coding-promoter-TSS (ENSMUSG00000063382.6) -14584 ENSMUSG00000111312.1 ENSMUSG00000111312 ENSMUST00000215551 Gm47205 TEC Interval_100700 chr2 171771512 171771758 + 0 NA Intergenic Intergenic 190496 ENSMUSG00000086823.7 ENSMUSG00000086823 ENSMUST00000125465 1700028P15Rik processed_transcript Interval_22741 chr11 14264730 14265034 + 0 NA Intergenic Intergenic -85841 ENSMUSG00000085452.1 ENSMUSG00000085452 ENSMUST00000126260 4930554G24Rik lincRNA Interval_124308 chr5 43813881 43816356 + 0 NA intron (ENSMUSG00000039753.16, intron 1 of 10) protein_coding-intron (ENSMUSG00000039753.16, intron 1 of 10) -3767 ENSMUSG00000029082.17 ENSMUSG00000029082 ENSMUST00000125838 Bst1 protein_coding Interval_17983 chr10 81232748 81233618 + 0 NA promoter-TSS (ENSMUSG00000034949.18) protein_coding-promoter-TSS (ENSMUSG00000034949.18) -2398 ENSMUSG00000034958.11 ENSMUSG00000034958 ENSMUST00000133555 Atcay protein_coding Interval_148966 chr7 90466649 90466934 + 0 NA TTS (ENSMUSG00000030614.8) protein_coding-TTS (ENSMUSG00000030614.8) 9204 ENSMUSG00000030614.8 ENSMUSG00000030614 ENSMUST00000123622 Tmem126b protein_coding Interval_131091 chr5 135035741 135035919 + 0 NA intron (ENSMUSG00000007207.10, intron 1 of 6) protein_coding-intron (ENSMUSG00000007207.10, intron 1 of 9) 12323 ENSMUSG00000007207.10 ENSMUSG00000007207 ENSMUST00000144198 Stx1a protein_coding Interval_103340 chr3 39601875 39602372 + 0 NA Intergenic Intergenic -33936 ENSMUSG00000106786.1 ENSMUSG00000106786 ENSMUST00000201317 Gm42781 TEC Interval_115074 chr4 89276085 89277101 + 0 NA intron (ENSMUSG00000044303.6, intron 2 of 2) protein_coding-intron (ENSMUSG00000044303.6, intron 2 of 2) -4006 ENSMUSG00000087659.7 ENSMUSG00000087659 ENSMUST00000127174 Gm12606 lincRNA Interval_118279 chr4 130013404 130014685 + 0 NA intron (ENSMUSG00000028782.14, intron 1 of 2) protein_coding-intron (ENSMUSG00000028782.14, intron 19 of 28) 1843 ENSMUSG00000028782.14 ENSMUSG00000028782 ENSMUST00000136787 Adgrb2 protein_coding Interval_80409 chr18 41936554 41938302 + 0 NA exon (ENSMUSG00000056671.7, exon 2 of 2) protein_coding-exon (ENSMUSG00000056671.7, exon 2 of 2) 13789 ENSMUSG00000056671.7 ENSMUSG00000056671 ENSMUST00000236542 Prelid2 protein_coding Interval_105845 chr3 89679361 89679703 + 0 NA Intergenic Intergenic 17014 ENSMUSG00000000794.9 ENSMUSG00000000794 ENSMUST00000124584 Kcnn3 protein_coding Interval_34523 chr12 4890165 4890414 + 0 NA intron (ENSMUSG00000020634.12, intron 3 of 5) protein_coding-intron (ENSMUSG00000020634.12, intron 4 of 6) 16975 ENSMUSG00000020634.12 ENSMUSG00000020634 ENSMUST00000141360 Ubxn2a protein_coding Interval_21032 chr10 124177984 124178406 + 0 NA Intergenic Intergenic -40667 ENSMUSG00000112250.1 ENSMUSG00000112250 ENSMUST00000220441 Gm47837 processed_pseudogene Interval_156512 chr8 48957513 48957857 + 0 NA TTS (ENSMUSG00000089548.1) snoRNA-TTS (ENSMUSG00000089548.1) 796 ENSMUSG00000089548.1 ENSMUSG00000089548 ENSMUST00000158923 Gm25830 snoRNA Interval_3514 chr1 59222732 59223078 + 0 NA intron (ENSMUSG00000026024.14, intron 1 of 2) protein_coding-intron (ENSMUSG00000026024.14, intron 1 of 33) -3779 ENSMUSG00000026024.14 ENSMUSG00000026024 ENSMUST00000188469 Als2 protein_coding Interval_6608 chr1 118274914 118275629 + 0 NA Intergenic Intergenic 25408 ENSMUSG00000099870.1 ENSMUSG00000099870 ENSMUST00000188426 Gm7200 processed_pseudogene Interval_137929 chr6 83440990 83442131 + 0 NA promoter-TSS (ENSMUSG00000051844.13) processed_transcript-promoter-TSS (ENSMUSG00000051844.13) 72 ENSMUSG00000034832.15 ENSMUSG00000034832 ENSMUST00000205921 Tet3 protein_coding Interval_60034 chr15 64122218 64123452 + 0 NA promoter-TSS (ENSMUSG00000022377.16) protein_coding-promoter-TSS (ENSMUSG00000022377.16) 971 ENSMUSG00000022377.16 ENSMUSG00000022377 ENSMUST00000175963 Asap1 protein_coding Interval_41205 chr12 111773962 111774990 + 0 NA exon (ENSMUSG00000021288.19, exon 3 of 16) protein_coding-exon (ENSMUSG00000021288.19, exon 3 of 16) 15627 ENSMUSG00000021288.19 ENSMUSG00000021288 ENSMUST00000147203 Klc1 protein_coding Interval_95721 chr2 114918549 114919206 + 0 NA intron (ENSMUSG00000085222.1, intron 5 of 8) lincRNA-intron (ENSMUSG00000085222.1, intron 5 of 8) -19693 ENSMUSG00000099361.1 ENSMUSG00000099361 ENSMUST00000190899 Gm28492 sense_intronic Interval_56457 chr14 118899766 118901063 + 0 NA promoter-TSS (ENSMUSG00000042156.16) protein_coding-promoter-TSS (ENSMUSG00000042156.16) -10751 ENSMUSG00000042156.16 ENSMUSG00000042156 ENSMUST00000226919 Dzip1 protein_coding Interval_86714 chr19 42890367 42892983 + 0 NA intron (ENSMUSG00000074852.4, intron 9 of 11) protein_coding-intron (ENSMUSG00000074852.4, intron 9 of 11) 112565 ENSMUSG00000090235.1 ENSMUSG00000090235 ENSMUST00000160001 Gm16244 processed_transcript Interval_168071 chr9 75867579 75868355 + 0 NA intron (ENSMUSG00000032179.7, intron 3 of 6) protein_coding-intron (ENSMUSG00000032179.7, intron 3 of 6) -8293 ENSMUSG00000110817.1 ENSMUSG00000110817 ENSMUST00000215680 Gm47723 TEC Interval_162942 chr9 13612928 13613957 + 0 NA intron (ENSMUSG00000031925.17, intron 1 of 4) protein_coding-intron (ENSMUSG00000031925.17, intron 1 of 4) -7784 ENSMUSG00000093092.1 ENSMUSG00000093092 ENSMUST00000175351 Gm22643 miRNA Interval_94140 chr2 84635178 84636536 + 0 NA intron (ENSMUSG00000101645.1, intron 2 of 20) protein_coding-intron (ENSMUSG00000034101.14, intron 1 of 18) -23222 ENSMUSG00000086598.9 ENSMUSG00000086598 ENSMUST00000133437 Btbd18 protein_coding Interval_30534 chr11 94987120 94988205 + 0 NA Intergenic Intergenic -5218 ENSMUSG00000038976.12 ENSMUSG00000038976 ENSMUST00000107748 Ppp1r9b protein_coding Interval_70709 chr17 13731584 13733109 + 0 NA intron (ENSMUSG00000038347.15, intron 1 of 2) protein_coding-intron (ENSMUSG00000038347.15, intron 1 of 3) 27738 ENSMUSG00000038347.15 ENSMUSG00000038347 ENSMUST00000155166 Tcte2 protein_coding Interval_91014 chr2 34260671 34261666 + 0 NA intron (ENSMUSG00000038718.15, intron 1 of 5) protein_coding-intron (ENSMUSG00000038718.15, intron 2 of 8) -26603 ENSMUSG00000084908.2 ENSMUSG00000084908 ENSMUST00000131588 C79798 antisense Interval_28153 chr11 73269230 73269727 + 0 NA intron (ENSMUSG00000043029.2, intron 1 of 17) protein_coding-intron (ENSMUSG00000043029.2, intron 1 of 17) 2090 ENSMUSG00000043029.2 ENSMUSG00000043029 ENSMUST00000049676 Trpv3 protein_coding Interval_133390 chr6 4608203 4608773 + 0 NA intron (ENSMUSG00000015189.12, intron 2 of 7) protein_coding-intron (ENSMUSG00000015189.12, intron 2 of 17) -1746 ENSMUSG00000107932.1 ENSMUSG00000107932 ENSMUST00000203342 Gm44432 TEC Interval_77033 chr17 85837041 85837343 + 0 NA Intergenic Intergenic -13148 ENSMUSG00000100345.1 ENSMUSG00000100345 ENSMUST00000186162 Gm29418 lincRNA Interval_133449 chr6 5167406 5167732 + 0 NA TTS (ENSMUSG00000002588.13) protein_coding-TTS (ENSMUSG00000002588.13) 26215 ENSMUSG00000002588.13 ENSMUSG00000002588 ENSMUST00000176933 Pon1 protein_coding Interval_74743 chr17 56269071 56269915 + 0 NA exon (ENSMUSG00000047123.8, exon 2 of 2) protein_coding-exon (ENSMUSG00000047123.8, exon 2 of 2) 7293 ENSMUSG00000047123.8 ENSMUSG00000047123 ENSMUST00000058136 Ticam1 protein_coding Interval_159343 chr8 93940254 93940656 + 0 NA intron (ENSMUSG00000031748.16, intron 3 of 7) protein_coding-intron (ENSMUSG00000031748.16, intron 3 of 8) -6519 ENSMUSG00000093005.1 ENSMUSG00000093005 ENSMUST00000175264 Gm24159 miRNA Interval_52962 chr14 52325738 52326424 + 0 NA intron (ENSMUSG00000049532.11, intron 1 of 1) protein_coding-intron (ENSMUSG00000049532.11, intron 1 of 1) -9758 ENSMUSG00000049532.11 ENSMUSG00000049532 ENSMUST00000058326 Sall2 protein_coding Interval_148363 chr7 80773999 80774536 + 0 NA intron (ENSMUSG00000030536.10, intron 2 of 13) protein_coding-intron (ENSMUSG00000030536.10, intron 2 of 37) 22445 ENSMUSG00000108321.1 ENSMUSG00000108321 ENSMUST00000205608 Gm44649 antisense Interval_128353 chr5 112693273 112693588 + 0 NA intron (ENSMUSG00000072720.9, intron 9 of 10) protein_coding-intron (ENSMUSG00000072720.9, intron 42 of 43) 18055 ENSMUSG00000104807.1 ENSMUSG00000104807 ENSMUST00000197981 Gm42865 lincRNA Interval_123009 chr5 28398253 28400493 + 0 NA intron (ENSMUSG00000048271.14, intron 1 of 4) protein_coding-intron (ENSMUSG00000048271.14, intron 15 of 18) 5318 ENSMUSG00000048271.14 ENSMUSG00000048271 ENSMUST00000133313 Rbm33 protein_coding Interval_82620 chr18 75478654 75479508 + 0 NA intron (ENSMUSG00000052928.9, intron 9 of 11) protein_coding-intron (ENSMUSG00000052928.9, intron 9 of 11) -35564 ENSMUSG00000097712.1 ENSMUSG00000097712 ENSMUST00000181913 Gm10532 antisense Interval_142881 chr6 146655699 146657057 + 0 NA promoter-TSS (ENSMUSG00000085238.1) lincRNA-promoter-TSS (ENSMUSG00000085238.1) -840 ENSMUSG00000085238.1 ENSMUSG00000085238 ENSMUST00000146754 4930479D17Rik lincRNA Interval_12932 chr10 8277962 8278231 + 0 NA intron (ENSMUSG00000047712.8, intron 2 of 6) protein_coding-intron (ENSMUSG00000047712.8, intron 5 of 7) 24146 ENSMUSG00000047712.8 ENSMUSG00000047712 ENSMUST00000061601 Ust protein_coding Interval_41710 chr12 118106844 118107382 + 0 NA intron (ENSMUSG00000018581.15, intron 25 of 81) protein_coding-intron (ENSMUSG00000018581.15, intron 25 of 81) -46810 ENSMUSG00000018581.15 ENSMUSG00000018581 ENSMUST00000176239 Dnah11 protein_coding Interval_5207 chr1 86452828 86453049 + 0 NA Intergenic Intergenic -20721 ENSMUSG00000101328.1 ENSMUSG00000101328 ENSMUST00000163337 Rpl30-ps6 processed_pseudogene Interval_28989 chr11 79746087 79746636 + 0 NA Intergenic Intergenic 19961 ENSMUSG00000065489.1 ENSMUSG00000065489 ENSMUST00000083555 Mir365-2 miRNA Interval_93369 chr2 72455494 72455746 + 0 NA Intergenic Intergenic -20633 ENSMUSG00000055612.15 ENSMUSG00000055612 ENSMUST00000137880 Cdca7 protein_coding Interval_129016 chr5 116757735 116759672 + 0 NA intron (ENSMUSG00000106909.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000106909.1, intron 1 of 2) -52528 ENSMUSG00000107237.1 ENSMUSG00000107237 ENSMUST00000201443 Gm29926 lincRNA Interval_1007 chr1 13872451 13873333 + 0 NA Intergenic Intergenic -23773 ENSMUSG00000102166.1 ENSMUSG00000102166 ENSMUST00000194709 Gm36947 TEC Interval_43327 chr13 29209559 29211215 + 0 NA intron (ENSMUSG00000006191.17, intron 15 of 16) protein_coding-intron (ENSMUSG00000006191.17, intron 15 of 16) 26233 ENSMUSG00000086423.1 ENSMUSG00000086423 ENSMUST00000137593 Gm11364 sense_intronic Interval_98083 chr2 147775818 147777191 + 0 NA Intergenic Intergenic 65811 ENSMUSG00000051986.6 ENSMUSG00000051986 ENSMUST00000152542 A530006G24Rik lincRNA Interval_90462 chr2 30604919 30605634 + 0 NA promoter-TSS (ENSMUSG00000047363.4) protein_coding-promoter-TSS (ENSMUSG00000047363.4) 59 ENSMUSG00000047363.4 ENSMUSG00000047363 ENSMUST00000129719 Cstad protein_coding Interval_53927 chr14 63459589 63461362 + 0 NA intron (ENSMUSG00000035095.11, intron 3 of 3) protein_coding-intron (ENSMUSG00000035095.11, intron 3 of 3) 14901 ENSMUSG00000114258.1 ENSMUSG00000114258 ENSMUST00000226020 Gm47074 processed_pseudogene Interval_146589 chr7 47098023 47098747 + 0 NA intron (ENSMUSG00000030854.17, intron 2 of 12) protein_coding-intron (ENSMUSG00000030854.17, intron 2 of 13) -12466 ENSMUSG00000109501.1 ENSMUSG00000109501 ENSMUST00000207045 Gm14377 antisense Interval_109825 chr3 148425219 148425448 + 0 NA Intergenic Intergenic -29608 ENSMUSG00000105718.1 ENSMUSG00000105718 ENSMUST00000197937 Gm43576 TEC Interval_145501 chr7 35246258 35247124 + 0 NA intron (ENSMUSG00000118454.1, intron 8 of 9) protein_coding-intron (ENSMUSG00000118454.1, intron 8 of 9) 28842 ENSMUSG00000118454.1 ENSMUSG00000118454 ENSMUST00000238407 Wdr88 protein_coding Interval_160876 chr8 114456032 114456516 + 0 NA intron (ENSMUSG00000004637.15, intron 1 of 2) protein_coding-intron (ENSMUSG00000004637.15, intron 4 of 8) 38188 ENSMUSG00000008874.3 ENSMUSG00000008874 ENSMUST00000009018 Clec3a protein_coding Interval_156986 chr8 63868314 63870165 + 0 NA Intergenic Intergenic -8957 ENSMUSG00000077153.1 ENSMUSG00000077153 ENSMUST00000103965 Gm24580 snoRNA Interval_21611 chr11 3237462 3237948 + 0 NA intron (ENSMUSG00000020454.17, intron 14 of 18) protein_coding-intron (ENSMUSG00000020454.17, intron 13 of 17) 28687 ENSMUSG00000020457.13 ENSMUSG00000020457 ENSMUST00000132159 Drg1 protein_coding Interval_162067 chr8 124845115 124845378 + 0 NA intron (ENSMUSG00000031984.8, intron 2 of 6) protein_coding-intron (ENSMUSG00000031984.8, intron 2 of 6) 13548 ENSMUSG00000090118.1 ENSMUSG00000090118 ENSMUST00000161868 Gm16163 processed_transcript Interval_43443 chr13 30991561 30994202 + 0 NA Intergenic Intergenic -16296 ENSMUSG00000082014.2 ENSMUSG00000082014 ENSMUST00000120294 Gm11371 processed_pseudogene Interval_71505 chr17 24205237 24207157 + 0 NA promoter-TSS (ENSMUSG00000036473.16) protein_coding-promoter-TSS (ENSMUSG00000036473.16) -701 ENSMUSG00000036473.16 ENSMUSG00000036473 ENSMUST00000201716 Tbc1d24 protein_coding Interval_13453 chr10 18391844 18392038 + 0 NA intron (ENSMUSG00000039835.16, intron 1 of 4) protein_coding-intron (ENSMUSG00000039835.16, intron 1 of 4) -54700 ENSMUSG00000111313.1 ENSMUSG00000111313 ENSMUST00000213578 Gm18942 processed_pseudogene Interval_156815 chr8 60766180 60766396 + 0 NA Intergenic Intergenic 9169 ENSMUSG00000109988.1 ENSMUSG00000109988 ENSMUST00000210857 Gm45651 processed_pseudogene Interval_76127 chr17 75252170 75252753 + 0 NA intron (ENSMUSG00000001870.16, intron 10 of 34) protein_coding-intron (ENSMUSG00000001870.16, intron 9 of 33) 87254 ENSMUSG00000084025.1 ENSMUSG00000084025 ENSMUST00000120159 Gm6276 processed_pseudogene Interval_40470 chr12 105058749 105059259 + 0 NA Intergenic Intergenic 26316 ENSMUSG00000021102.4 ENSMUSG00000021102 ENSMUST00000220494 Glrx5 protein_coding Interval_8159 chr1 136156542 136156862 + 0 NA intron (ENSMUSG00000041642.18, intron 15 of 35) protein_coding-intron (ENSMUSG00000041642.18, intron 15 of 34) -3656 ENSMUSG00000041642.18 ENSMUSG00000041642 ENSMUST00000165333 Kif21b protein_coding Interval_29017 chr11 79924926 79925613 + 0 NA Intergenic Intergenic 19288 ENSMUSG00000082252.1 ENSMUSG00000082252 ENSMUST00000122438 Gm11204 processed_pseudogene Interval_131833 chr5 140208263 140209284 + 0 NA promoter-TSS (ENSMUSG00000087248.7) antisense-promoter-TSS (ENSMUSG00000087248.7) -769 ENSMUSG00000087248.7 ENSMUSG00000087248 ENSMUST00000133999 Gm16120 antisense Interval_131099 chr5 135106586 135108743 + 0 NA intron (ENSMUSG00000005373.13, intron 1 of 5) protein_coding-intron (ENSMUSG00000005373.13, intron 1 of 16) 15629 ENSMUSG00000107296.1 ENSMUSG00000107296 ENSMUST00000201067 Gm43500 antisense Interval_136337 chr6 53247378 53247574 + 0 NA Intergenic Intergenic 26312 ENSMUSG00000107935.1 ENSMUSG00000107935 ENSMUST00000205210 Gm4872 lincRNA Interval_132668 chr5 147053979 147054367 + 0 NA intron (ENSMUSG00000016520.7, intron 1 of 9) protein_coding-intron (ENSMUSG00000016520.7, intron 1 of 9) -23391 ENSMUSG00000029642.11 ENSMUSG00000029642 ENSMUST00000196288 Polr1d protein_coding Interval_132118 chr5 142825745 142826358 + 0 NA Intergenic Intergenic 27148 ENSMUSG00000082308.1 ENSMUSG00000082308 ENSMUST00000117498 Gm15770 processed_pseudogene Interval_144750 chr7 28007616 28008668 + 0 NA intron (ENSMUSG00000096916.7, intron 3 of 5) protein_coding-intron (ENSMUSG00000096916.7, intron 1 of 3) 5973 ENSMUSG00000096916.7 ENSMUSG00000096916 ENSMUST00000180024 Zfp850 protein_coding Interval_80939 chr18 50758369 50758563 + 0 NA Intergenic Intergenic -157047 ENSMUSG00000048875.3 ENSMUSG00000048875 ENSMUST00000056460 Pudp protein_coding Interval_43350 chr13 29541438 29541873 + 0 NA intron (ENSMUSG00000006191.17, intron 11 of 11) protein_coding-intron (ENSMUSG00000006191.17, intron 10 of 15) -24201 ENSMUSG00000006191.17 ENSMUSG00000006191 ENSMUST00000129231 Cdkal1 protein_coding Interval_152930 chr7 139861127 139861903 + 0 NA intron (ENSMUSG00000025475.17, intron 6 of 7) protein_coding-intron (ENSMUSG00000025475.17, intron 6 of 7) 26836 ENSMUSG00000109710.1 ENSMUSG00000109710 ENSMUST00000209974 Gm4974 processed_pseudogene Interval_13620 chr10 20222211 20222428 + 0 NA intron (ENSMUSG00000019996.17, intron 1 of 5) protein_coding-intron (ENSMUSG00000019996.17, intron 1 of 17) 13829 ENSMUSG00000111356.1 ENSMUSG00000111356 ENSMUST00000216127 Rpl32l processed_pseudogene Interval_101717 chr3 9107656 9108496 + 0 NA Intergenic Intergenic 35309 ENSMUSG00000103011.1 ENSMUSG00000103011 ENSMUST00000193160 Gm8860 processed_pseudogene Interval_2554 chr1 40311246 40311975 + 0 NA intron (ENSMUSG00000026072.12, intron 9 of 10) protein_coding-intron (ENSMUSG00000026072.12, intron 9 of 10) -13080 ENSMUSG00000070942.8 ENSMUSG00000070942 ENSMUST00000193388 Il1rl2 protein_coding Interval_21373 chr10 128231683 128232962 + 0 NA TTS (ENSMUSG00000025389.7) protein_coding-TTS (ENSMUSG00000025389.7) 6484 ENSMUSG00000025389.7 ENSMUSG00000025389 ENSMUST00000026455 Mip protein_coding Interval_43361 chr13 29679924 29680356 + 0 NA intron (ENSMUSG00000006191.17, intron 8 of 11) protein_coding-intron (ENSMUSG00000006191.17, intron 8 of 15) -162686 ENSMUSG00000006191.17 ENSMUSG00000006191 ENSMUST00000129231 Cdkal1 protein_coding Interval_36479 chr12 45620132 45620413 + 0 NA Intergenic Intergenic -46985 ENSMUSG00000112768.1 ENSMUSG00000112768 ENSMUST00000218809 Gm48517 unprocessed_pseudogene Interval_15264 chr10 43920827 43921079 + 0 NA promoter-TSS (ENSMUSG00000019864.14) protein_coding-promoter-TSS (ENSMUSG00000019864.14) -25412 ENSMUSG00000019863.7 ENSMUSG00000019863 ENSMUST00000217541 Qrsl1 protein_coding Interval_52296 chr14 44067288 44068358 + 0 NA Intergenic Intergenic -6738 ENSMUSG00000090259.1 ENSMUSG00000090259 ENSMUST00000161968 Gm16545 unprocessed_pseudogene Interval_45913 chr13 59210778 59211080 + 0 NA TTS (ENSMUSG00000114478.1) lincRNA-TTS (ENSMUSG00000114478.1) 6243 ENSMUSG00000114478.1 ENSMUSG00000114478 ENSMUST00000225924 Gm34558 lincRNA Interval_109343 chr3 139205245 139206320 + 0 NA promoter-TSS (ENSMUSG00000047940.13) protein_coding-promoter-TSS (ENSMUSG00000047940.13) 88 ENSMUSG00000047940.13 ENSMUSG00000047940 ENSMUST00000062306 Stpg2 protein_coding Interval_13160 chr10 12658271 12658797 + 0 NA exon (ENSMUSG00000019820.11, exon 42 of 74) protein_coding-exon (ENSMUSG00000019820.11, exon 42 of 74) 30328 ENSMUSG00000019820.11 ENSMUSG00000019820 ENSMUST00000219135 Utrn protein_coding Interval_138324 chr6 87215098 87215566 + 0 NA intron (ENSMUSG00000033420.12, intron 6 of 6) protein_coding-intron (ENSMUSG00000033420.12, intron 13 of 17) 40276 ENSMUSG00000107865.1 ENSMUSG00000107865 ENSMUST00000203298 Gm44417 TEC Interval_148475 chr7 81553797 81555007 + 0 NA intron (ENSMUSG00000038663.7, intron 3 of 12) protein_coding-intron (ENSMUSG00000038663.7, intron 3 of 12) 12542 ENSMUSG00000038663.7 ENSMUSG00000038663 ENSMUST00000042318 Fsd2 protein_coding Interval_28314 chr11 75147118 75148497 + 0 NA intron (ENSMUSG00000038290.15, intron 13 of 16) protein_coding-intron (ENSMUSG00000038290.15, intron 15 of 18) -11826 ENSMUSG00000038290.15 ENSMUSG00000038290 ENSMUST00000153226 Smg6 protein_coding Interval_26744 chr11 60175351 60177645 + 0 NA intron (ENSMUSG00000062115.15, intron 1 of 4) protein_coding-intron (ENSMUSG00000062115.15, intron 2 of 5) 24119 ENSMUSG00000098547.1 ENSMUSG00000098547 ENSMUST00000183719 Mir6921 miRNA Interval_81303 chr18 57707568 57708256 + 0 NA intron (ENSMUSG00000118391.1, intron 4 of 5) protein_coding-intron (ENSMUSG00000058925.11, intron 6 of 6) 26098 ENSMUSG00000105951.1 ENSMUSG00000105951 ENSMUST00000196794 Gm44491 miRNA Interval_133205 chr5 150526763 150529366 + 0 NA intron (ENSMUSG00000041147.10, intron 2 of 7) protein_coding-intron (ENSMUSG00000041147.10, intron 2 of 26) 5432 ENSMUSG00000041147.10 ENSMUSG00000041147 ENSMUST00000201165 Brca2 protein_coding Interval_15455 chr10 46920582 46921032 + 0 NA Intergenic Intergenic -64305 ENSMUSG00000111499.1 ENSMUSG00000111499 ENSMUST00000216234 Gm47562 processed_pseudogene Interval_71466 chr17 23960143 23960839 + 0 NA Intergenic Intergenic -5217 ENSMUSG00000024125.2 ENSMUSG00000024125 ENSMUST00000024939 Sbpl protein_coding Interval_159400 chr8 94329054 94329449 + 0 NA promoter-TSS (ENSMUSG00000031766.4) protein_coding-promoter-TSS (ENSMUSG00000031766.4) 4940 ENSMUSG00000065512.3 ENSMUSG00000065512 ENSMUST00000083578 Mir138-2 miRNA Interval_84341 chr19 10222496 10223777 + 0 NA exon (ENSMUSG00000036098.15, exon 7 of 27) protein_coding-exon (ENSMUSG00000036098.15, exon 7 of 27) 17103 ENSMUSG00000036372.14 ENSMUSG00000036372 ENSMUST00000166412 Tmem258 protein_coding Interval_41912 chr13 4281625 4282392 + 0 NA Intergenic Intergenic -2575 ENSMUSG00000021211.4 ENSMUSG00000021211 ENSMUST00000021632 Akr1c12 protein_coding Interval_62172 chr15 88537332 88537656 + 0 NA Intergenic Intergenic -62808 ENSMUSG00000054117.8 ENSMUSG00000054117 ENSMUST00000066949 Zdhhc25 protein_coding Interval_27566 chr11 68759124 68759320 + 0 NA intron (ENSMUSG00000020900.15, intron 6 of 12) protein_coding-intron (ENSMUSG00000020900.15, intron 7 of 42) 67068 ENSMUSG00000020900.15 ENSMUSG00000020900 ENSMUST00000139059 Myh10 protein_coding Interval_71382 chr17 22866622 22867584 + 0 NA promoter-TSS (ENSMUSG00000059142.16) protein_coding-promoter-TSS (ENSMUSG00000059142.16) 31 ENSMUSG00000059142.16 ENSMUSG00000059142 ENSMUST00000127557 Zfp945 protein_coding Interval_149777 chr7 101393618 101394696 + 0 NA promoter-TSS (ENSMUSG00000032812.18) protein_coding-promoter-TSS (ENSMUSG00000032812.18) 8549 ENSMUSG00000032812.18 ENSMUSG00000032812 ENSMUST00000124637 Arap1 protein_coding Interval_29128 chr11 80489903 80490087 + 0 NA intron (ENSMUSG00000035441.14, intron 21 of 21) protein_coding-intron (ENSMUSG00000035441.14, intron 21 of 21) 12939 ENSMUSG00000048895.13 ENSMUSG00000048895 ENSMUST00000147694 Cdk5r1 protein_coding Interval_106397 chr3 95920463 95921191 + 0 NA Intergenic Intergenic -8498 ENSMUSG00000015749.12 ENSMUSG00000015749 ENSMUST00000168471 Anp32e protein_coding Interval_109875 chr3 149290703 149290956 + 0 NA intron (ENSMUSG00000106515.4, intron 3 of 3) lincRNA-intron (ENSMUSG00000106515.4, intron 2 of 2) -14000 ENSMUSG00000105797.1 ENSMUSG00000105797 ENSMUST00000199768 Gm5149 lincRNA Interval_88853 chr2 11682418 11683406 + 0 NA promoter-TSS (ENSMUSG00000104101.1) TEC-promoter-TSS (ENSMUSG00000104101.1) -214 ENSMUSG00000104101.1 ENSMUSG00000104101 ENSMUST00000193001 Gm37881 TEC Interval_167031 chr9 64678412 64678756 + 0 NA intron (ENSMUSG00000036466.17, intron 10 of 24) protein_coding-intron (ENSMUSG00000036466.17, intron 10 of 24) 47136 ENSMUSG00000004771.12 ENSMUSG00000004771 ENSMUST00000165083 Rab11a protein_coding Interval_107871 chr3 116466522 116467840 + 0 NA TTS (ENSMUSG00000088840.1) snoRNA-TTS (ENSMUSG00000088840.1) 562 ENSMUSG00000088840.1 ENSMUSG00000088840 ENSMUST00000158215 Gm26358 snoRNA Interval_44988 chr13 51161890 51162077 + 0 NA Intergenic Intergenic -9076 ENSMUSG00000021396.5 ENSMUSG00000021396 ENSMUST00000221339 Nxnl2 protein_coding Interval_120442 chr4 148649455 148649866 + 0 NA intron (ENSMUSG00000070577.5, intron 1 of 10) protein_coding-intron (ENSMUSG00000070577.5, intron 1 of 10) 6343 ENSMUSG00000070577.5 ENSMUSG00000070577 ENSMUST00000105698 Gm572 protein_coding Interval_122486 chr5 23401041 23402266 + 0 NA intron (ENSMUSG00000073147.3, intron 3 of 4) lincRNA-intron (ENSMUSG00000073147.3, intron 1 of 6) 5550 ENSMUSG00000105042.1 ENSMUSG00000105042 ENSMUST00000197390 Gm42509 TEC Interval_145685 chr7 37367343 37367695 + 0 NA promoter-TSS (ENSMUSG00000108507.1) TEC-promoter-TSS (ENSMUSG00000108507.1) -889 ENSMUSG00000108507.1 ENSMUSG00000108507 ENSMUST00000206785 6720469O03Rik TEC Interval_171807 chr9 121310319 121310727 + 0 NA intron (ENSMUSG00000032536.12, intron 1 of 1) protein_coding-intron (ENSMUSG00000032536.12, intron 1 of 1) -8862 ENSMUSG00000110751.1 ENSMUSG00000110751 ENSMUST00000214451 C230053D17Rik TEC Interval_43690 chr13 35056477 35058929 + 0 NA intron (ENSMUSG00000113738.1, intron 1 of 4) lincRNA-intron (ENSMUSG00000113738.1, intron 1 of 4) -7758 ENSMUSG00000114233.1 ENSMUSG00000114233 ENSMUST00000225041 Gm48629 lincRNA Interval_30877 chr11 97021420 97022609 + 0 NA exon (ENSMUSG00000038560.7, exon 2 of 2) protein_coding-exon (ENSMUSG00000038560.7, exon 2 of 2) 3281 ENSMUSG00000038560.7 ENSMUSG00000038560 ENSMUST00000107622 Sp6 protein_coding Interval_148555 chr7 82566618 82567183 + 0 NA intron (ENSMUSG00000070469.12, intron 19 of 29) protein_coding-intron (ENSMUSG00000070469.12, intron 19 of 29) 81596 ENSMUSG00000038570.15 ENSMUSG00000038570 ENSMUST00000126478 Saxo2 protein_coding Interval_36973 chr12 55813361 55814274 + 0 NA intron (ENSMUSG00000021027.17, intron 1 of 39) protein_coding-intron (ENSMUSG00000021027.17, intron 1 of 40) 2710 ENSMUSG00000112393.1 ENSMUSG00000112393 ENSMUST00000217762 Gm48655 TEC Interval_117770 chr4 126130081 126130810 + 0 NA intron (ENSMUSG00000042608.15, intron 8 of 12) protein_coding-intron (ENSMUSG00000042608.15, intron 6 of 10) -15534 ENSMUSG00000086961.1 ENSMUSG00000086961 ENSMUST00000122969 Gm12946 antisense Interval_38735 chr12 81721650 81722599 + 0 NA TTS (ENSMUSG00000042724.8) protein_coding-TTS (ENSMUSG00000042724.8) -2072 ENSMUSG00000113184.1 ENSMUSG00000113184 ENSMUST00000221438 Gm49654 lincRNA Interval_148249 chr7 80084148 80086587 + 0 NA intron (ENSMUSG00000048897.15, intron 2 of 3) protein_coding-intron (ENSMUSG00000048897.15, intron 2 of 4) 5064 ENSMUSG00000108655.1 ENSMUSG00000108655 ENSMUST00000206423 Gm44949 antisense Interval_113504 chr4 55386888 55387104 + 0 NA intron (ENSMUSG00000028426.10, intron 9 of 9) protein_coding-intron (ENSMUSG00000028426.10, intron 9 of 9) 5705 ENSMUSG00000084144.1 ENSMUSG00000084144 ENSMUST00000120819 Gm12516 processed_pseudogene Interval_10476 chr1 171218762 171219013 + 0 NA TTS (ENSMUSG00000005677.14) protein_coding-TTS (ENSMUSG00000005677.14) 3545 ENSMUSG00000005674.9 ENSMUSG00000005674 ENSMUST00000130529 Tomm40l protein_coding Interval_63637 chr15 102470219 102471388 + 0 NA promoter-TSS (ENSMUSG00000056851.14) protein_coding-promoter-TSS (ENSMUSG00000056851.14) 46 ENSMUSG00000056851.14 ENSMUSG00000056851 ENSMUST00000230631 Pcbp2 protein_coding Interval_116132 chr4 108001306 108001976 + 0 NA intron (ENSMUSG00000008932.10, intron 3 of 10) protein_coding-intron (ENSMUSG00000008932.10, intron 3 of 10) 29345 ENSMUSG00000028600.15 ENSMUSG00000028600 ENSMUST00000124265 Podn protein_coding Interval_20637 chr10 119819106 119819845 + 0 NA promoter-TSS (ENSMUSG00000034813.18) protein_coding-promoter-TSS (ENSMUSG00000034813.18) 32802 ENSMUSG00000085418.1 ENSMUSG00000085418 ENSMUST00000135940 Grip1os1 antisense Interval_77556 chr17 91495632 91496408 + 0 NA Intergenic Intergenic 40570 ENSMUSG00000117396.1 ENSMUSG00000117396 ENSMUST00000234004 Gm49989 processed_pseudogene Interval_123645 chr5 34246197 34246434 + 0 NA intron (ENSMUSG00000037224.15, intron 1 of 3) protein_coding-intron (ENSMUSG00000037224.15, intron 1 of 12) -13759 ENSMUSG00000037224.15 ENSMUSG00000037224 ENSMUST00000114368 Zfyve28 protein_coding Interval_54519 chr14 70428798 70429827 + 0 NA promoter-TSS (ENSMUSG00000033644.5) protein_coding-promoter-TSS (ENSMUSG00000033644.5) -248 ENSMUSG00000033644.5 ENSMUSG00000033644 ENSMUST00000226426 Piwil2 protein_coding Interval_18285 chr10 84576167 84577432 + 0 NA promoter-TSS (ENSMUSG00000020034.7) protein_coding-promoter-TSS (ENSMUSG00000020034.7) -98 ENSMUSG00000020034.7 ENSMUSG00000020034 ENSMUST00000160057 Tcp11l2 protein_coding Interval_79347 chr18 30856755 30856982 + 0 NA Intergenic Intergenic -247978 ENSMUSG00000117526.1 ENSMUSG00000117526 ENSMUST00000235078 Gm41780 processed_pseudogene Interval_134793 chr6 31597170 31598347 + 0 NA Intergenic Intergenic 22791 ENSMUSG00000086732.1 ENSMUSG00000086732 ENSMUST00000150540 Gm6117 lincRNA Interval_88298 chr2 3466193 3466693 + 0 NA intron (ENSMUSG00000026646.16, intron 1 of 4) protein_coding-intron (ENSMUSG00000026646.16, intron 2 of 5) -2170 ENSMUSG00000085043.1 ENSMUSG00000085043 ENSMUST00000149932 Gm13184 antisense Interval_31037 chr11 97825469 97827229 + 0 NA intron (ENSMUSG00000038366.15, intron 4 of 4) protein_coding-intron (ENSMUSG00000038366.15, intron 4 of 6) 11101 ENSMUSG00000038366.15 ENSMUSG00000038366 ENSMUST00000107568 Lasp1 protein_coding Interval_59086 chr15 43418251 43418566 + 0 NA Intergenic Intergenic -40735 ENSMUSG00000115635.1 ENSMUSG00000115635 ENSMUST00000227040 Gm49271 lincRNA Interval_93554 chr2 74110093 74110761 + 0 NA Intergenic Intergenic -8085 ENSMUSG00000085387.1 ENSMUSG00000085387 ENSMUST00000151443 A630050E04Rik lincRNA Interval_60730 chr15 76415356 76415641 + 0 NA intron (ENSMUSG00000022558.16, intron 12 of 31) protein_coding-intron (ENSMUSG00000022558.16, intron 11 of 30) -17716 ENSMUSG00000099260.1 ENSMUSG00000099260 ENSMUST00000183412 Mir6954 miRNA Interval_41617 chr12 117034670 117035855 + 0 NA intron (ENSMUSG00000056553.14, intron 12 of 22) protein_coding-intron (ENSMUSG00000056553.14, intron 12 of 22) 115953 ENSMUSG00000099907.1 ENSMUSG00000099907 ENSMUST00000186114 Gm10421 processed_transcript Interval_86469 chr19 40830717 40832171 + 0 NA exon (ENSMUSG00000025010.14, exon 1 of 5) protein_coding-exon (ENSMUSG00000025010.14, exon 1 of 5) 136 ENSMUSG00000025010.14 ENSMUSG00000025010 ENSMUST00000119316 Ccnj protein_coding Interval_141650 chr6 131960453 131961274 + 0 NA Intergenic Intergenic -19244 ENSMUSG00000107774.1 ENSMUSG00000107774 ENSMUST00000205080 Gm43974 lincRNA Interval_61933 chr15 85333364 85334064 + 0 NA Intergenic Intergenic -2531 ENSMUSG00000016541.10 ENSMUSG00000016541 ENSMUST00000163242 Atxn10 protein_coding Interval_13357 chr10 17027405 17027591 + 0 NA intron (ENSMUSG00000101969.2, intron 1 of 3) processed_transcript-intron (ENSMUSG00000101969.2, intron 1 of 8) -50350 ENSMUSG00000101969.2 ENSMUSG00000101969 ENSMUST00000208870 Gm20125 processed_transcript Interval_68261 chr16 71470089 71470696 + 0 NA Intergenic Intergenic -193396 ENSMUSG00000065924.1 ENSMUSG00000065924 ENSMUST00000083990 Gm22797 snoRNA Interval_121612 chr5 3895942 3896141 + 0 NA Intergenic Intergenic -2145 ENSMUSG00000040429.6 ENSMUSG00000040429 ENSMUST00000196417 Mterf1a protein_coding Interval_24640 chr11 35544254 35545878 + 0 NA intron (ENSMUSG00000056427.10, intron 1 of 8) protein_coding-intron (ENSMUSG00000056427.10, intron 6 of 35) -71750 ENSMUSG00000065583.1 ENSMUSG00000065583 ENSMUST00000083649 Mir218-2 miRNA Interval_125958 chr5 76210293 76210506 + 0 NA exon (ENSMUSG00000029238.11, exon 23 of 23) protein_coding-exon (ENSMUSG00000029238.11, exon 23 of 23) 6279 ENSMUSG00000029234.13 ENSMUSG00000029234 ENSMUST00000153633 Tmem165 protein_coding Interval_128289 chr5 112305452 112306210 + 0 NA intron (ENSMUSG00000029344.15, intron 1 of 4) protein_coding-intron (ENSMUSG00000029344.15, intron 2 of 6) -20590 ENSMUSG00000029345.13 ENSMUSG00000029345 ENSMUST00000126736 Tfip11 protein_coding Interval_172702 chrX 43660396 43660655 + 0 NA Intergenic Intergenic -49866 ENSMUSG00000081856.1 ENSMUSG00000081856 ENSMUST00000119122 Gm14580 processed_pseudogene Interval_117099 chr4 119520812 119521327 + 0 NA promoter-TSS (ENSMUSG00000084379.1) processed_pseudogene-promoter-TSS (ENSMUSG00000084379.1) 79 ENSMUSG00000084379.1 ENSMUSG00000084379 ENSMUST00000117835 Gm12957 processed_pseudogene Interval_22728 chr11 14053918 14054547 + 0 NA Intergenic Intergenic -107847 ENSMUSG00000081631.1 ENSMUSG00000081631 ENSMUST00000121451 Gm12005 processed_pseudogene Interval_128789 chr5 115262555 115263460 + 0 NA promoter-TSS (ENSMUSG00000083875.1) processed_pseudogene-promoter-TSS (ENSMUSG00000083875.1) -86 ENSMUSG00000083875.1 ENSMUSG00000083875 ENSMUST00000118764 Gm13831 processed_pseudogene Interval_158379 chr8 83210033 83210368 + 0 NA intron (ENSMUSG00000031709.15, intron 1 of 20) protein_coding-intron (ENSMUSG00000031709.15, intron 1 of 17) -44030 ENSMUSG00000074228.3 ENSMUSG00000074228 ENSMUST00000238241 Gm10645 TEC Interval_156766 chr8 58387953 58389624 + 0 NA intron (ENSMUSG00000096914.3, intron 5 of 12) protein_coding-intron (ENSMUSG00000096914.3, intron 5 of 12) -134506 ENSMUSG00000090003.1 ENSMUSG00000090003 ENSMUST00000161344 Gm15882 antisense Interval_9113 chr1 153697542 153697848 + 0 NA TTS (ENSMUSG00000042671.12) protein_coding-TTS (ENSMUSG00000042671.12) -5039 ENSMUSG00000100945.1 ENSMUSG00000100945 ENSMUST00000187154 Gm29529 antisense Interval_116045 chr4 107203143 107203701 + 0 NA Intergenic Intergenic -5758 ENSMUSG00000070877.4 ENSMUSG00000070877 ENSMUST00000094916 Ldlrad1 protein_coding Interval_109956 chr3 152153626 152155503 + 0 NA TTS (ENSMUSG00000084343.1) processed_pseudogene-TTS (ENSMUSG00000084343.1) 1117 ENSMUSG00000084343.1 ENSMUSG00000084343 ENSMUST00000118766 Gm16198 processed_pseudogene Interval_41901 chr13 4075232 4076889 + 0 NA intron (ENSMUSG00000033715.15, intron 6 of 11) protein_coding-intron (ENSMUSG00000033715.15, intron 3 of 8) -2194 ENSMUSG00000033715.15 ENSMUSG00000033715 ENSMUST00000147180 Akr1c14 protein_coding Interval_42153 chr13 9222896 9224419 + 0 NA exon (ENSMUSG00000113936.1, exon 1 of 1) processed_pseudogene-exon (ENSMUSG00000113936.1, exon 1 of 1) 120 ENSMUSG00000113936.1 ENSMUSG00000113936 ENSMUST00000222096 Gm8784 processed_pseudogene Interval_119911 chr4 140859880 140860871 + 0 NA Intergenic Intergenic -12318 ENSMUSG00000087045.1 ENSMUSG00000087045 ENSMUST00000140588 4930515B02Rik lincRNA Interval_36102 chr12 35848852 35849044 + 0 NA Intergenic Intergenic -29684 ENSMUSG00000114090.1 ENSMUSG00000114090 ENSMUST00000221625 Gm9472 processed_pseudogene Interval_147096 chr7 62782230 62782641 + 0 NA exon (ENSMUSG00000109289.1, exon 1 of 1) processed_pseudogene-exon (ENSMUSG00000109289.1, exon 1 of 1) 190 ENSMUSG00000109289.1 ENSMUSG00000109289 ENSMUST00000207689 Gm32111 processed_pseudogene Interval_95911 chr2 118296064 118296402 + 0 NA intron (ENSMUSG00000040133.2, intron 1 of 2) protein_coding-intron (ENSMUSG00000040133.2, intron 1 of 2) -8681 ENSMUSG00000085889.1 ENSMUSG00000085889 ENSMUST00000125654 1700054M17Rik antisense Interval_19027 chr10 93889006 93890304 + 0 NA promoter-TSS (ENSMUSG00000036112.15) protein_coding-promoter-TSS (ENSMUSG00000036112.15) -2169 ENSMUSG00000036112.15 ENSMUSG00000036112 ENSMUST00000181434 Metap2 protein_coding Interval_169055 chr9 91350589 91351322 + 0 NA promoter-TSS (ENSMUSG00000102406.1) TEC-promoter-TSS (ENSMUSG00000102406.1) -2 ENSMUSG00000102406.1 ENSMUSG00000102406 ENSMUST00000193867 A730094K22Rik TEC Interval_81820 chr18 64999217 64999585 + 0 NA intron (ENSMUSG00000024589.18, intron 2 of 4) protein_coding-intron (ENSMUSG00000024589.18, intron 2 of 29) 1774 ENSMUSG00000117895.1 ENSMUSG00000117895 ENSMUST00000237218 Gm50368 antisense Interval_148569 chr7 82729142 82729448 + 0 NA intron (ENSMUSG00000038563.14, intron 15 of 19) protein_coding-intron (ENSMUSG00000038563.14, intron 15 of 19) 13703 ENSMUSG00000108984.1 ENSMUSG00000108984 ENSMUST00000208664 Gm44916 TEC Interval_34046 chr11 120174933 120175140 + 0 NA Intergenic Intergenic 13715 ENSMUSG00000075389.3 ENSMUSG00000075389 ENSMUST00000145437 2810410L24Rik processed_transcript Interval_100708 chr2 171863974 171864786 + 0 NA Intergenic Intergenic 97751 ENSMUSG00000086823.7 ENSMUSG00000086823 ENSMUST00000125465 1700028P15Rik processed_transcript Interval_122972 chr5 28079038 28079965 + 0 NA TTS (ENSMUSG00000045294.11) protein_coding-TTS (ENSMUSG00000045294.11) 4835 ENSMUSG00000045294.11 ENSMUSG00000045294 ENSMUST00000199728 Insig1 protein_coding Interval_104968 chr3 79394910 79395211 + 0 NA intron (ENSMUSG00000091685.6, intron 1 of 3) protein_coding-intron (ENSMUSG00000091685.6, intron 1 of 4) 49681 ENSMUSG00000091685.6 ENSMUSG00000091685 ENSMUST00000199658 Gm17359 protein_coding Interval_54635 chr14 72531913 72533064 + 0 NA exon (ENSMUSG00000108975.1, exon 1 of 2) unitary_pseudogene-exon (ENSMUSG00000108975.1, exon 1 of 2) 161 ENSMUSG00000108975.1 ENSMUSG00000108975 ENSMUST00000208959 Mlnr-ps unitary_pseudogene Interval_74214 chr17 47508057 47508435 + 0 NA TTS (ENSMUSG00000034165.16) protein_coding-TTS (ENSMUSG00000034165.16) -5974 ENSMUSG00000023980.7 ENSMUSG00000023980 ENSMUST00000233675 Taf8 protein_coding Interval_74046 chr17 46252689 46255470 + 0 NA promoter-TSS (ENSMUSG00000071073.5) protein_coding-promoter-TSS (ENSMUSG00000071073.5) 548 ENSMUSG00000071073.5 ENSMUSG00000071073 ENSMUST00000095262 Lrrc73 protein_coding Interval_115896 chr4 105961164 105963463 + 0 NA Intergenic Intergenic 13572 ENSMUSG00000089065.1 ENSMUSG00000089065 ENSMUST00000158440 Gm24363 misc_RNA Interval_35790 chr12 29837466 29837888 + 0 NA intron (ENSMUSG00000061911.15, intron 12 of 24) protein_coding-intron (ENSMUSG00000061911.15, intron 12 of 24) -13871 ENSMUSG00000061911.15 ENSMUSG00000061911 ENSMUST00000219744 Myt1l protein_coding Interval_137043 chr6 66926330 66926871 + 0 NA intron (ENSMUSG00000036402.13, intron 2 of 3) protein_coding-intron (ENSMUSG00000036402.13, intron 2 of 4) 29709 ENSMUSG00000036402.13 ENSMUSG00000036402 ENSMUST00000204862 Gng12 protein_coding Interval_93981 chr2 80466846 80467281 + 0 NA Intergenic Intergenic -28433 ENSMUSG00000027004.3 ENSMUSG00000027004 ENSMUST00000142459 Frzb protein_coding Interval_64675 chr16 14094033 14094432 + 0 NA intron (ENSMUSG00000044117.12, intron 3 of 3) protein_coding-intron (ENSMUSG00000044117.12, intron 4 of 5) 26829 ENSMUSG00000083536.1 ENSMUSG00000083536 ENSMUST00000119046 Gm15808 processed_pseudogene Interval_52784 chr14 49988233 49988487 + 0 NA Intergenic Intergenic 3437 ENSMUSG00000115556.1 ENSMUSG00000115556 ENSMUST00000227648 Gm49133 processed_pseudogene Interval_7662 chr1 132904119 132904535 + 0 NA intron (ENSMUSG00000026443.3, intron 1 of 1) protein_coding-intron (ENSMUSG00000026443.3, intron 1 of 1) 19417 ENSMUSG00000106377.1 ENSMUSG00000106377 ENSMUST00000196792 Gm44300 miRNA Interval_43727 chr13 35797932 35799394 + 0 NA promoter-TSS (ENSMUSG00000114555.1) TEC-promoter-TSS (ENSMUSG00000114555.1) -87 ENSMUSG00000114555.1 ENSMUSG00000114555 ENSMUST00000224988 Gm48706 TEC Interval_62886 chr15 97717740 97718237 + 0 NA intron (ENSMUSG00000022468.12, intron 4 of 7) protein_coding-intron (ENSMUSG00000022468.12, intron 5 of 8) 3174 ENSMUSG00000022468.12 ENSMUSG00000022468 ENSMUST00000100249 Endou protein_coding Interval_31806 chr11 102991304 102992216 + 0 NA Intergenic Intergenic 8161 ENSMUSG00000098613.1 ENSMUSG00000098613 ENSMUST00000184841 Mir6931 miRNA Interval_82662 chr18 75740349 75741183 + 0 NA Intergenic Intergenic -26377 ENSMUSG00000118164.1 ENSMUSG00000118164 ENSMUST00000237826 Gm20570 processed_pseudogene Interval_23198 chr11 20477076 20478860 + 0 NA Intergenic Intergenic 31556 ENSMUSG00000083878.3 ENSMUSG00000083878 ENSMUST00000119032 Gm12034 processed_pseudogene Interval_64218 chr16 9255079 9255793 + 0 NA Intergenic Intergenic 96666 ENSMUSG00000116123.1 ENSMUSG00000116123 ENSMUST00000229655 Gm49451 lincRNA Interval_171457 chr9 118470863 118471960 + 0 NA Intergenic Intergenic -4347 ENSMUSG00000084515.1 ENSMUSG00000084515 ENSMUST00000122566 Gm22479 snRNA Interval_35894 chr12 31674657 31676249 + 0 NA intron (ENSMUSG00000035933.5, intron 5 of 22) protein_coding-intron (ENSMUSG00000035933.5, intron 5 of 22) -20677 ENSMUSG00000020648.3 ENSMUSG00000020648 ENSMUST00000219855 Dus4l protein_coding Interval_132802 chr5 147963823 147965032 + 0 NA intron (ENSMUSG00000029651.16, intron 1 of 14) protein_coding-intron (ENSMUSG00000029651.16, intron 1 of 14) -7261 ENSMUSG00000085565.1 ENSMUSG00000085565 ENSMUST00000138406 Gm15721 lincRNA Interval_144238 chr7 23693910 23694843 + 0 NA Intergenic Intergenic -6327 ENSMUSG00000115021.1 ENSMUSG00000115021 ENSMUST00000174055 Vmn1r173 protein_coding Interval_93681 chr2 75791468 75792916 + 0 NA Intergenic Intergenic 15004 ENSMUSG00000086813.1 ENSMUSG00000086813 ENSMUST00000135682 Gm13657 processed_transcript Interval_56053 chr14 105166191 105167496 + 0 NA intron (ENSMUSG00000022119.15, intron 1 of 21) protein_coding-intron (ENSMUSG00000022119.15, intron 1 of 21) 17542 ENSMUSG00000115831.1 ENSMUSG00000115831 ENSMUST00000226837 Gm48937 processed_pseudogene Interval_147799 chr7 73623915 73624267 + 0 NA Intergenic Intergenic 3344 ENSMUSG00000108497.1 ENSMUSG00000108497 ENSMUST00000206393 Gm44738 lincRNA Interval_21186 chr10 127114737 127115523 + 0 NA intron (ENSMUSG00000040462.13, intron 5 of 14) protein_coding-intron (ENSMUSG00000040462.13, intron 5 of 13) 5985 ENSMUSG00000040462.13 ENSMUSG00000040462 ENSMUST00000218798 Os9 protein_coding Interval_47562 chr13 88729370 88730225 + 0 NA Intergenic Intergenic -91691 ENSMUSG00000034488.14 ENSMUSG00000034488 ENSMUST00000043111 Edil3 protein_coding Interval_104456 chr3 65928884 65930588 + 0 NA Intergenic Intergenic 4172 ENSMUSG00000102566.1 ENSMUSG00000102566 ENSMUST00000194475 Gm37037 processed_pseudogene Interval_141550 chr6 129163524 129163778 + 0 NA Intergenic Intergenic -11169 ENSMUSG00000089590.1 ENSMUSG00000089590 ENSMUST00000158965 Gm26160 snRNA Interval_15550 chr10 51287755 51288173 + 0 NA Intergenic Intergenic 49135 ENSMUSG00000111880.1 ENSMUSG00000111880 ENSMUST00000218609 Gm5040 processed_pseudogene Interval_44526 chr13 45729598 45730616 + 0 NA intron (ENSMUSG00000046876.16, intron 5 of 7) protein_coding-intron (ENSMUSG00000046876.16, intron 5 of 7) -19465 ENSMUSG00000114131.1 ENSMUSG00000114131 ENSMUST00000221126 Gm47460 antisense Interval_132493 chr5 145307505 145308472 + 0 NA Intergenic Intergenic 15218 ENSMUSG00000104682.1 ENSMUSG00000104682 ENSMUST00000197174 Gm42636 TEC Interval_30254 chr11 92052597 92052881 + 0 NA Intergenic Intergenic -28326 ENSMUSG00000093113.1 ENSMUSG00000093113 ENSMUST00000175372 Gm22702 miRNA Interval_144844 chr7 28568120 28568780 + 0 NA promoter-TSS (ENSMUSG00000030602.13) protein_coding-promoter-TSS (ENSMUSG00000030602.13) -7466 ENSMUSG00000098558.1 ENSMUSG00000098558 ENSMUST00000183983 Mir7049 miRNA Interval_34341 chr12 3504633 3505132 + 0 NA TTS (ENSMUSG00000037486.18) protein_coding-TTS (ENSMUSG00000037486.18) 18386 ENSMUSG00000112105.1 ENSMUSG00000112105 ENSMUST00000219719 Rps7-ps2 processed_pseudogene Interval_158646 chr8 84944123 84946177 + 0 NA Intergenic Intergenic -6031 ENSMUSG00000048617.16 ENSMUSG00000048617 ENSMUST00000152378 Rtbdn protein_coding Interval_8760 chr1 150556778 150557320 + 0 NA Intergenic Intergenic 7732 ENSMUSG00000101519.1 ENSMUSG00000101519 ENSMUST00000186208 Ska2l-ps processed_pseudogene Interval_159013 chr8 88812944 88813212 + 0 NA Intergenic Intergenic 6687 ENSMUSG00000056772.3 ENSMUSG00000056772 ENSMUST00000079841 Rps6-ps2 processed_pseudogene Interval_26533 chr11 58587767 58588318 + 0 NA Intergenic Intergenic -7086 ENSMUSG00000056564.7 ENSMUSG00000056564 ENSMUST00000054683 Olfr324 protein_coding Interval_11663 chr1 184154213 184155369 + 0 NA Intergenic Intergenic -120490 ENSMUSG00000044854.7 ENSMUSG00000044854 ENSMUST00000050306 1700056E22Rik protein_coding Interval_52343 chr14 45289484 45289745 + 0 NA intron (ENSMUSG00000021831.9, intron 6 of 7) protein_coding-intron (ENSMUSG00000021831.9, intron 13 of 15) 12125 ENSMUSG00000021831.9 ENSMUSG00000021831 ENSMUST00000228777 Ero1l protein_coding Interval_27336 chr11 66605601 66605844 + 0 NA Intergenic Intergenic 42115 ENSMUSG00000080978.2 ENSMUSG00000080978 ENSMUST00000121380 Gm12297 processed_pseudogene Interval_71279 chr17 21852786 21855187 + 0 NA Intergenic Intergenic -8214 ENSMUSG00000069743.5 ENSMUSG00000069743 ENSMUST00000232918 Zfp820 protein_coding Interval_40522 chr12 105476122 105477325 + 0 NA intron (ENSMUSG00000094910.1, intron 1 of 1) protein_coding-intron (ENSMUSG00000094910.1, intron 1 of 1) 22867 ENSMUSG00000094910.1 ENSMUSG00000094910 ENSMUST00000178224 D430019H16Rik protein_coding Interval_3355 chr1 57368777 57370436 + 0 NA intron (ENSMUSG00000097519.2, intron 2 of 3) lincRNA-intron (ENSMUSG00000097519.2, intron 2 of 3) 7938 ENSMUSG00000097519.2 ENSMUSG00000097519 ENSMUST00000181949 4930558J18Rik lincRNA Interval_90425 chr2 30373837 30374249 + 0 NA intron (ENSMUSG00000026858.18, intron 6 of 10) protein_coding-intron (ENSMUSG00000026858.18, intron 6 of 15) 6367 ENSMUSG00000105537.1 ENSMUSG00000105537 ENSMUST00000198501 Gm47292 miRNA Interval_89447 chr2 20722541 20723079 + 0 NA intron (ENSMUSG00000036617.17, intron 1 of 7) protein_coding-intron (ENSMUSG00000036617.17, intron 6 of 18) -9576 ENSMUSG00000086418.1 ENSMUSG00000086418 ENSMUST00000137186 Gm13362 antisense Interval_135342 chr6 38492367 38492995 + 0 NA intron (ENSMUSG00000038538.17, intron 1 of 1) protein_coding-intron (ENSMUSG00000038538.17, intron 14 of 16) -14644 ENSMUSG00000098285.1 ENSMUSG00000098285 ENSMUST00000183689 Mir7670 miRNA Interval_37954 chr12 73304519 73304773 + 0 NA intron (ENSMUSG00000044712.15, intron 4 of 4) protein_coding-intron (ENSMUSG00000044712.15, intron 4 of 4) 17751 ENSMUSG00000044712.15 ENSMUSG00000044712 ENSMUST00000150996 Slc38a6 protein_coding Interval_22409 chr11 9765911 9766168 + 0 NA Intergenic Intergenic -28418 ENSMUSG00000081629.1 ENSMUSG00000081629 ENSMUST00000117907 Eif3s6-ps1 processed_pseudogene Interval_39887 chr12 99363078 99363621 + 0 NA intron (ENSMUSG00000033713.12, intron 2 of 5) protein_coding-intron (ENSMUSG00000033713.12, intron 2 of 5) -1321 ENSMUSG00000113106.1 ENSMUSG00000113106 ENSMUST00000221888 Gm47139 TEC Interval_117387 chr4 123392017 123392731 + 0 NA intron (ENSMUSG00000028649.21, intron 60 of 93) protein_coding-intron (ENSMUSG00000028649.21, intron 59 of 92) -43243 ENSMUSG00000081528.1 ENSMUSG00000081528 ENSMUST00000121747 Gm12924 processed_pseudogene Interval_1016 chr1 14095598 14095861 + 0 NA Intergenic Intergenic 17090 ENSMUSG00000104209.1 ENSMUSG00000104209 ENSMUST00000193148 Gm37400 TEC Interval_9155 chr1 154139391 154139578 + 0 NA Intergenic Intergenic -21533 ENSMUSG00000100627.6 ENSMUSG00000100627 ENSMUST00000190485 A830008E24Rik lincRNA Interval_42425 chr13 13445566 13447411 + 0 NA intron (ENSMUSG00000005397.8, intron 1 of 13) protein_coding-intron (ENSMUSG00000005397.8, intron 1 of 19) -27319 ENSMUSG00000094865.2 ENSMUSG00000094865 ENSMUST00000179046 Gm7426 processed_pseudogene Interval_171049 chr9 113988582 113989458 + 0 NA TTS (ENSMUSG00000032507.15) protein_coding-TTS (ENSMUSG00000032507.15) -18022 ENSMUSG00000111793.1 ENSMUSG00000111793 ENSMUST00000214534 Gm47950 antisense Interval_94017 chr2 80732535 80732809 + 0 NA Intergenic Intergenic 25083 ENSMUSG00000077404.1 ENSMUSG00000077404 ENSMUST00000104216 Gm25420 snoRNA Interval_172861 chrX 52261509 52262083 + 0 NA Intergenic Intergenic -34385 ENSMUSG00000086704.1 ENSMUSG00000086704 ENSMUST00000141697 Gm14582 antisense Interval_102513 chr3 27406022 27407613 + 0 NA Intergenic Intergenic 35466 ENSMUSG00000051136.1 ENSMUSG00000051136 ENSMUST00000057186 Ghsr protein_coding Interval_110775 chr4 8238592 8240117 + 0 NA promoter-TSS (ENSMUSG00000041261.9) protein_coding-promoter-TSS (ENSMUSG00000041261.9) -313 ENSMUSG00000041261.9 ENSMUSG00000041261 ENSMUST00000066674 Car8 protein_coding Interval_8180 chr1 136295607 136295848 + 0 NA intron (ENSMUSG00000041570.14, intron 4 of 18) protein_coding-intron (ENSMUSG00000041570.14, intron 4 of 18) -13977 ENSMUSG00000041570.14 ENSMUSG00000041570 ENSMUST00000194730 Camsap2 protein_coding Interval_8173 chr1 136241414 136242451 + 0 NA Intergenic Intergenic -5730 ENSMUSG00000103594.1 ENSMUSG00000103594 ENSMUST00000194339 A430034D21Rik lincRNA Interval_139789 chr6 108705843 108706160 + 0 NA Intergenic Intergenic 42955 ENSMUSG00000030103.11 ENSMUSG00000030103 ENSMUST00000204550 Bhlhe40 protein_coding Interval_116302 chr4 109492016 109492636 + 0 NA Intergenic Intergenic -7598 ENSMUSG00000028557.10 ENSMUSG00000028557 ENSMUST00000145980 Rnf11 protein_coding Interval_47288 chr13 80750388 80751326 + 0 NA Intergenic Intergenic 134667 ENSMUSG00000089827.1 ENSMUSG00000089827 ENSMUST00000161006 1700023H06Rik processed_transcript Interval_18379 chr10 85437691 85437963 + 0 NA intron (ENSMUSG00000020042.15, intron 1 of 16) protein_coding-intron (ENSMUSG00000020042.15, intron 1 of 9) 103926 ENSMUSG00000087895.1 ENSMUSG00000087895 ENSMUST00000157270 Gm25281 miRNA Interval_2104 chr1 36458903 36459230 + 0 NA Intergenic Intergenic -12930 ENSMUSG00000037408.10 ENSMUSG00000037408 ENSMUST00000192530 Cnnm4 protein_coding Interval_169934 chr9 103066667 103066905 + 0 NA intron (ENSMUSG00000032548.14, intron 3 of 13) protein_coding-intron (ENSMUSG00000032548.14, intron 3 of 13) 18740 ENSMUSG00000110765.1 ENSMUSG00000110765 ENSMUST00000216778 Gm47468 antisense Interval_54820 chr14 75491438 75491748 + 0 NA intron (ENSMUSG00000091722.2, intron 1 of 1) protein_coding-intron (ENSMUSG00000091722.2, intron 1 of 1) 35611 ENSMUSG00000091722.2 ENSMUSG00000091722 ENSMUST00000164848 Siah3 protein_coding Interval_33682 chr11 117894733 117895255 + 0 NA Intergenic Intergenic -21513 ENSMUSG00000017713.9 ENSMUSG00000017713 ENSMUST00000138354 Tha1 protein_coding Interval_64421 chr16 11253231 11254823 + 0 NA TTS (ENSMUSG00000088544.1) miRNA-TTS (ENSMUSG00000088544.1) 298 ENSMUSG00000062203.15 ENSMUSG00000062203 ENSMUST00000229660 Gspt1 protein_coding Interval_44176 chr13 41586861 41587768 + 0 NA Intergenic Intergenic -9240 ENSMUSG00000092835.1 ENSMUSG00000092835 ENSMUST00000175094 Gm24819 snRNA Interval_35655 chr12 26663852 26664337 + 0 NA Intergenic Intergenic -61785 ENSMUSG00000113628.1 ENSMUSG00000113628 ENSMUST00000221140 1700020D12Rik lincRNA Interval_110087 chr3 153193200 153193451 + 0 NA Intergenic Intergenic -10510 ENSMUSG00000105337.4 ENSMUSG00000105337 ENSMUST00000197695 1700094M23Rik lincRNA Interval_127488 chr5 104434032 104435372 + 0 NA promoter-TSS (ENSMUSG00000029304.14) protein_coding-promoter-TSS (ENSMUSG00000029304.14) -419 ENSMUSG00000105954.1 ENSMUSG00000105954 ENSMUST00000199139 Gm42793 TEC Interval_48954 chr13 105742495 105742904 + 0 NA Intergenic Intergenic 90979 ENSMUSG00000114671.1 ENSMUSG00000114671 ENSMUST00000225365 Gm48211 processed_pseudogene Interval_25266 chr11 45979606 45981237 + 0 NA exon (ENSMUSG00000040489.5, exon 1 of 5) protein_coding-exon (ENSMUSG00000040489.5, exon 1 of 5) 111 ENSMUSG00000040489.5 ENSMUSG00000040489 ENSMUST00000049038 Sox30 protein_coding Interval_143179 chr7 4237753 4238213 + 0 NA intron (ENSMUSG00000070873.5, intron 2 of 5) protein_coding-intron (ENSMUSG00000070873.5, intron 2 of 5) 229 ENSMUSG00000070873.5 ENSMUSG00000070873 ENSMUST00000117550 Lilra5 protein_coding Interval_28137 chr11 73098591 73099150 + 0 NA intron (ENSMUSG00000005947.11, intron 1 of 25) protein_coding-intron (ENSMUSG00000005947.11, intron 1 of 30) 8287 ENSMUSG00000005947.11 ENSMUSG00000005947 ENSMUST00000006101 Itgae protein_coding Interval_157722 chr8 72525572 72525958 + 0 NA intron (ENSMUSG00000045248.6, intron 1 of 2) protein_coding-intron (ENSMUSG00000045248.6, intron 1 of 2) -5266 ENSMUSG00000110532.1 ENSMUSG00000110532 ENSMUST00000212739 Gm35857 processed_pseudogene Interval_108453 chr3 127376092 127376502 + 0 NA intron (ENSMUSG00000032826.19, intron 1 of 1) protein_coding-intron (ENSMUSG00000032826.19, intron 1 of 14) 17409 ENSMUSG00000105822.1 ENSMUSG00000105822 ENSMUST00000199858 Gm42969 TEC Interval_133484 chr6 5576480 5577708 + 0 NA Intergenic Intergenic -80833 ENSMUSG00000019577.6 ENSMUSG00000019577 ENSMUST00000134068 Pdk4 protein_coding Interval_67629 chr16 54357425 54357920 + 0 NA Intergenic Intergenic 3210 ENSMUSG00000064727.1 ENSMUSG00000064727 ENSMUST00000082793 Gm25853 snoRNA Interval_2666 chr1 43118798 43119034 + 0 NA Intergenic Intergenic 20206 ENSMUSG00000010290.7 ENSMUSG00000010290 ENSMUST00000010434 AI597479 protein_coding Interval_167296 chr9 67105609 67106070 + 0 NA exon (ENSMUSG00000111825.1, exon 2 of 3) lincRNA-exon (ENSMUSG00000111825.1, exon 2 of 3) 1631 ENSMUSG00000088021.1 ENSMUSG00000088021 ENSMUST00000157396 Gm22145 snRNA Interval_81986 chr18 66859396 66860900 + 0 NA exon (ENSMUSG00000047259.3, exon 1 of 1) protein_coding-exon (ENSMUSG00000047259.3, exon 1 of 1) 358 ENSMUSG00000047259.3 ENSMUSG00000047259 ENSMUST00000057942 Mc4r protein_coding Interval_6515 chr1 113957909 113959752 + 0 NA intron (ENSMUSG00000097648.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000097648.1, intron 1 of 2) 5304 ENSMUSG00000097648.1 ENSMUSG00000097648 ENSMUST00000180837 9330185C12Rik lincRNA Interval_93977 chr2 80415681 80416038 + 0 NA intron (ENSMUSG00000027004.3, intron 4 of 4) protein_coding-intron (ENSMUSG00000027004.3, intron 5 of 5) 20962 ENSMUSG00000085921.1 ENSMUSG00000085921 ENSMUST00000138195 Gm13752 antisense Interval_49012 chr13 106905987 106907449 + 0 NA intron (ENSMUSG00000042590.17, intron 4 of 29) protein_coding-intron (ENSMUSG00000042590.17, intron 5 of 29) 38811 ENSMUSG00000114572.1 ENSMUSG00000114572 ENSMUST00000225875 Gm48457 processed_pseudogene Interval_132979 chr5 149071369 149071878 + 0 NA intron (ENSMUSG00000066551.12, intron 2 of 5) protein_coding-intron (ENSMUSG00000066551.12, intron 2 of 5) 51789 ENSMUSG00000097191.2 ENSMUSG00000097191 ENSMUST00000200718 Mm2pr lincRNA Interval_67341 chr16 46592578 46593462 + 0 NA Intergenic Intergenic 55185 ENSMUSG00000116915.1 ENSMUSG00000116915 ENSMUST00000231611 Gm17900 processed_pseudogene Interval_40068 chr12 100987139 100987403 + 0 NA intron (ENSMUSG00000113634.1, intron 1 of 3) protein_coding-intron (ENSMUSG00000021182.16, intron 3 of 29) -19716 ENSMUSG00000113634.1 ENSMUSG00000113634 ENSMUST00000223241 Gm36756 antisense Interval_167545 chr9 70371435 70371701 + 0 NA intron (ENSMUSG00000032220.10, intron 23 of 28) protein_coding-intron (ENSMUSG00000032220.10, intron 22 of 27) 34185 ENSMUSG00000093763.1 ENSMUSG00000093763 ENSMUST00000176002 Mir5626 miRNA Interval_48065 chr13 95696161 95697299 + 0 NA promoter-TSS (ENSMUSG00000021675.4) protein_coding-promoter-TSS (ENSMUSG00000021675.4) -123 ENSMUSG00000021675.4 ENSMUSG00000021675 ENSMUST00000022182 F2rl2 protein_coding Interval_43578 chr13 33762511 33763679 + 0 NA Intergenic Intergenic -3825 ENSMUSG00000080317.3 ENSMUSG00000080317 ENSMUST00000116665 Vmn2r-ps94 unprocessed_pseudogene Interval_152827 chr7 138432861 138433268 + 0 NA Intergenic Intergenic 19287 ENSMUSG00000110354.1 ENSMUSG00000110354 ENSMUST00000211580 Gm45686 lincRNA Interval_61363 chr15 81091921 81092210 + 0 NA intron (ENSMUSG00000042292.18, intron 2 of 13) protein_coding-intron (ENSMUSG00000042292.18, intron 1 of 12) 23780 ENSMUSG00000116321.1 ENSMUSG00000116321 ENSMUST00000230595 Gm49522 TEC Interval_20415 chr10 117417110 117419058 + 0 NA Intergenic Intergenic -4180 ENSMUSG00000112796.1 ENSMUSG00000112796 ENSMUST00000220040 Gm40770 lincRNA Interval_35614 chr12 25615638 25615977 + 0 NA Intergenic Intergenic -71994 ENSMUSG00000089441.1 ENSMUSG00000089441 ENSMUST00000158816 Gm22527 rRNA Interval_57828 chr15 22217123 22217301 + 0 NA Intergenic Intergenic -56858 ENSMUSG00000098700.1 ENSMUSG00000098700 ENSMUST00000184465 Gm27525 miRNA Interval_119097 chr4 135531686 135533308 + 0 NA intron (ENSMUSG00000028801.14, intron 8 of 8) protein_coding-intron (ENSMUSG00000028801.14, intron 7 of 8) -20018 ENSMUSG00000080474.1 ENSMUSG00000080474 ENSMUST00000116824 Gm25317 miRNA Interval_127709 chr5 106960224 106960889 + 0 NA Intergenic Intergenic -13990 ENSMUSG00000029283.17 ENSMUSG00000029283 ENSMUST00000123546 Cdc7 protein_coding Interval_101594 chr3 7483524 7484131 + 0 NA Intergenic Intergenic 18193 ENSMUSG00000088484.1 ENSMUSG00000088484 ENSMUST00000157859 Gm23592 snoRNA Interval_77434 chr17 88668167 88669212 + 0 NA promoter-TSS (ENSMUSG00000024154.11) protein_coding-promoter-TSS (ENSMUSG00000024154.11) 12 ENSMUSG00000024154.11 ENSMUSG00000024154 ENSMUST00000161481 Gtf2a1l protein_coding Interval_157378 chr8 69973708 69974905 + 0 NA promoter-TSS (ENSMUSG00000036180.15) protein_coding-promoter-TSS (ENSMUSG00000036180.15) 22078 ENSMUSG00000036180.15 ENSMUSG00000036180 ENSMUST00000211960 Gatad2a protein_coding Interval_76477 chr17 80462975 80463589 + 0 NA intron (ENSMUSG00000024241.7, intron 1 of 19) protein_coding-intron (ENSMUSG00000024241.7, intron 1 of 21) 17171 ENSMUSG00000024241.7 ENSMUSG00000024241 ENSMUST00000234841 Sos1 protein_coding Interval_50518 chr14 14569652 14570115 + 0 NA Intergenic Intergenic 19333 ENSMUSG00000114676.1 ENSMUSG00000114676 ENSMUST00000225279 Gm47678 processed_pseudogene Interval_82466 chr18 74246132 74246318 + 0 NA Intergenic Intergenic 5335 ENSMUSG00000118151.1 ENSMUSG00000118151 ENSMUST00000238110 Gm5690 processed_pseudogene Interval_107784 chr3 114681470 114682331 + 0 NA Intergenic Intergenic -137128 ENSMUSG00000106452.1 ENSMUSG00000106452 ENSMUST00000199345 Gm43749 processed_pseudogene Interval_14730 chr10 39421392 39421746 + 0 NA intron (ENSMUSG00000019843.14, intron 1 of 2) protein_coding-intron (ENSMUSG00000019843.14, intron 2 of 13) 1560 ENSMUSG00000019843.14 ENSMUSG00000019843 ENSMUST00000123205 Fyn protein_coding Interval_4426 chr1 74082594 74084777 + 0 NA intron (ENSMUSG00000055322.16, intron 1 of 33) protein_coding-intron (ENSMUSG00000055322.16, intron 1 of 34) 14991 ENSMUSG00000055322.16 ENSMUSG00000055322 ENSMUST00000190599 Tns1 protein_coding Interval_31519 chr11 101138445 101139167 + 0 NA Intergenic Intergenic 1703 ENSMUSG00000092762.2 ENSMUSG00000092762 ENSMUST00000175021 Gm27626 miRNA Interval_120943 chr4 151830147 151830456 + 0 NA intron (ENSMUSG00000014592.21, intron 3 of 3) protein_coding-intron (ENSMUSG00000014592.21, intron 3 of 23) 31403 ENSMUSG00000014592.21 ENSMUSG00000014592 ENSMUST00000135780 Camta1 protein_coding Interval_34531 chr12 4916832 4918482 + 0 NA exon (ENSMUSG00000052812.5, exon 1 of 31) protein_coding-exon (ENSMUSG00000052812.5, exon 1 of 31) -10393 ENSMUSG00000020634.12 ENSMUSG00000020634 ENSMUST00000141360 Ubxn2a protein_coding Interval_97523 chr2 138467804 138468773 + 0 NA intron (ENSMUSG00000062098.11, intron 2 of 3) protein_coding-intron (ENSMUSG00000062098.11, intron 2 of 5) -121104 ENSMUSG00000085911.1 ENSMUSG00000085911 ENSMUST00000155923 Gm14061 lincRNA Interval_101798 chr3 9603623 9604475 + 0 NA intron (ENSMUSG00000040209.12, intron 1 of 8) protein_coding-intron (ENSMUSG00000040209.12, intron 1 of 8) -38750 ENSMUSG00000040209.12 ENSMUSG00000040209 ENSMUST00000192832 Zfp704 protein_coding Interval_89283 chr2 18834807 18835092 + 0 NA Intergenic Intergenic -33131 ENSMUSG00000097638.1 ENSMUSG00000097638 ENSMUST00000181515 Carlr protein_coding Interval_137736 chr6 81943678 81943869 + 0 NA TTS (ENSMUSG00000035125.10) protein_coding-TTS (ENSMUSG00000035125.10) 13058 ENSMUSG00000035125.10 ENSMUSG00000035125 ENSMUST00000129678 Gcfc2 protein_coding Interval_138329 chr6 87277064 87277859 + 0 NA promoter-TSS (ENSMUSG00000108006.1) antisense-promoter-TSS (ENSMUSG00000108006.1) -284 ENSMUSG00000108006.1 ENSMUSG00000108006 ENSMUST00000204219 Gm44418 antisense Interval_12286 chr1 191404432 191404656 + 0 NA Intergenic Intergenic -3122 ENSMUSG00000103433.1 ENSMUSG00000103433 ENSMUST00000194903 Gm2272 processed_pseudogene Interval_152105 chr7 129412509 129413238 + 0 NA Intergenic Intergenic -9783 ENSMUSG00000108713.1 ENSMUSG00000108713 ENSMUST00000206093 Gm33027 lincRNA Interval_76333 chr17 79169624 79169924 + 0 NA Intergenic Intergenic -66030 ENSMUSG00000117054.1 ENSMUSG00000117054 ENSMUST00000232888 Gm49869 processed_pseudogene Interval_124332 chr5 44083289 44084817 + 0 NA TTS (ENSMUSG00000105264.1) processed_transcript-TTS (ENSMUSG00000105264.1) 5480 ENSMUSG00000105264.1 ENSMUSG00000105264 ENSMUST00000196555 Gm42716 processed_transcript Interval_141774 chr6 134388093 134390495 + 0 NA intron (ENSMUSG00000107666.1, intron 3 of 8) antisense-intron (ENSMUSG00000107666.1, intron 3 of 8) -9346 ENSMUSG00000030200.13 ENSMUSG00000030200 ENSMUST00000142612 Bcl2l14 protein_coding Interval_36012 chr12 33285465 33286684 + 0 NA intron (ENSMUSG00000020564.17, intron 3 of 12) protein_coding-intron (ENSMUSG00000020564.17, intron 3 of 11) -28326 ENSMUSG00000020564.17 ENSMUSG00000020564 ENSMUST00000142184 Atxn7l1 protein_coding Interval_127938 chr5 109596333 109596885 + 0 NA Intergenic Intergenic -2470 ENSMUSG00000098393.1 ENSMUSG00000098393 ENSMUST00000184380 Gm28000 misc_RNA Interval_144669 chr7 27423835 27424044 + 0 NA intron (ENSMUSG00000011751.16, intron 6 of 35) protein_coding-intron (ENSMUSG00000011751.16, intron 6 of 35) -9197 ENSMUSG00000108416.1 ENSMUSG00000108416 ENSMUST00000138087 Gm44924 processed_transcript Interval_62109 chr15 86873766 86874020 + 0 NA Intergenic Intergenic 50189 ENSMUSG00000115957.1 ENSMUSG00000115957 ENSMUST00000229974 Gm49466 lincRNA Interval_98835 chr2 155431659 155432010 + 0 NA intron (ENSMUSG00000038369.14, intron 4 of 9) protein_coding-intron (ENSMUSG00000038369.14, intron 4 of 13) -28273 ENSMUSG00000038369.14 ENSMUSG00000038369 ENSMUST00000134508 Ncoa6 protein_coding Interval_133473 chr6 5437835 5438007 + 0 NA Intergenic Intergenic 47494 ENSMUSG00000042607.15 ENSMUSG00000042607 ENSMUST00000183358 Asb4 protein_coding Interval_103124 chr3 35723477 35724002 + 0 NA Intergenic Intergenic -11634 ENSMUSG00000064834.1 ENSMUSG00000064834 ENSMUST00000082900 Gm25696 snRNA Interval_146623 chr7 48749278 48750327 + 0 NA Intergenic Intergenic -22980 ENSMUSG00000109170.1 ENSMUSG00000109170 ENSMUST00000209052 Gm45086 lincRNA Interval_90767 chr2 32495214 32496142 + 0 NA Intergenic Intergenic 7690 ENSMUSG00000103175.1 ENSMUSG00000103175 ENSMUST00000195599 Gm37169 TEC Interval_40242 chr12 102706681 102707672 + 0 NA intron (ENSMUSG00000096751.3, intron 2 of 2) processed_transcript-intron (ENSMUSG00000096751.3, intron 2 of 2) 20146 ENSMUSG00000100006.1 ENSMUSG00000100006 ENSMUST00000180187 Gm21971 lincRNA Interval_79506 chr18 32472778 32473667 + 0 NA promoter-TSS (ENSMUSG00000109238.2) protein_coding-promoter-TSS (ENSMUSG00000109238.2) -633 ENSMUSG00000109238.2 ENSMUSG00000109238 ENSMUST00000207671 Gm35060 protein_coding Interval_169093 chr9 92260570 92261759 + 0 NA intron (ENSMUSG00000032369.13, intron 3 of 8) protein_coding-intron (ENSMUSG00000032369.13, intron 3 of 8) -5131 ENSMUSG00000032369.13 ENSMUSG00000032369 ENSMUST00000187952 Plscr1 protein_coding Interval_147348 chr7 66022154 66022428 + 0 NA intron (ENSMUSG00000030513.14, intron 11 of 19) protein_coding-intron (ENSMUSG00000030513.14, intron 13 of 21) -21311 ENSMUSG00000108793.1 ENSMUSG00000108793 ENSMUST00000206065 Gm45213 protein_coding Interval_124333 chr5 44086069 44086463 + 0 NA intron (ENSMUSG00000105264.1, intron 1 of 1) protein_coding-intron (ENSMUSG00000029086.15, intron 1 of 21) 3267 ENSMUSG00000105264.1 ENSMUSG00000105264 ENSMUST00000196555 Gm42716 processed_transcript Interval_41433 chr12 113872019 113872858 + 0 NA Intergenic Intergenic 3801 ENSMUSG00000103893.1 ENSMUSG00000103893 ENSMUST00000193834 Ighv5-18 IG_V_pseudogene Interval_132396 chr5 144695535 144695898 + 0 NA Intergenic Intergenic 28081 ENSMUSG00000082524.3 ENSMUSG00000082524 ENSMUST00000121256 Gm6272 processed_pseudogene Interval_65814 chr16 29216611 29216823 + 0 NA intron (ENSMUSG00000022525.13, intron 1 of 3) protein_coding-intron (ENSMUSG00000022525.13, intron 1 of 3) 6609 ENSMUSG00000022525.13 ENSMUSG00000022525 ENSMUST00000161294 Plaat1 protein_coding Interval_107560 chr3 108499851 108500104 + 0 NA intron (ENSMUSG00000040412.17, intron 1 of 1) protein_coding-intron (ENSMUSG00000040412.17, intron 1 of 20) 1859 ENSMUSG00000080673.1 ENSMUSG00000080673 ENSMUST00000117023 Gm23336 snRNA Interval_53656 chr14 60653102 60653563 + 0 NA intron (ENSMUSG00000021990.16, intron 2 of 2) protein_coding-intron (ENSMUSG00000021990.16, intron 1 of 12) -56430 ENSMUSG00000114408.1 ENSMUSG00000114408 ENSMUST00000224210 Gm47810 processed_pseudogene Interval_20789 chr10 120956888 120957616 + 0 NA intron (ENSMUSG00000048661.14, intron 1 of 12) protein_coding-intron (ENSMUSG00000048661.14, intron 1 of 13) 17173 ENSMUSG00000093030.1 ENSMUSG00000093030 ENSMUST00000175289 Gm23632 miRNA Interval_140433 chr6 118049682 118050309 + 0 NA intron (ENSMUSG00000030134.11, intron 1 of 12) protein_coding-intron (ENSMUSG00000030134.11, intron 1 of 12) -16424 ENSMUSG00000030134.11 ENSMUSG00000030134 ENSMUST00000203482 Rasgef1a protein_coding Interval_89538 chr2 22043979 22045692 + 0 NA Intergenic Intergenic -22991 ENSMUSG00000081467.1 ENSMUSG00000081467 ENSMUST00000119183 Gm13337 processed_pseudogene Interval_14431 chr10 33623759 33625649 + 0 NA promoter-TSS (ENSMUSG00000019785.14) protein_coding-promoter-TSS (ENSMUSG00000019785.14) -85 ENSMUSG00000019785.14 ENSMUSG00000019785 ENSMUST00000160299 Clvs2 protein_coding Interval_71095 chr17 17909727 17911317 + 0 NA TTS (ENSMUSG00000090957.2) processed_pseudogene-TTS (ENSMUSG00000090957.2) 2294 ENSMUSG00000090957.2 ENSMUSG00000090957 ENSMUST00000164167 Gm7535 processed_pseudogene Interval_80537 chr18 43545987 43546277 + 0 NA intron (ENSMUSG00000024502.10, intron 19 of 21) protein_coding-intron (ENSMUSG00000024502.10, intron 19 of 21) -5521 ENSMUSG00000024502.10 ENSMUSG00000024502 ENSMUST00000237069 Jakmip2 protein_coding Interval_118647 chr4 132973877 132975344 + 0 NA intron (ENSMUSG00000028874.14, intron 1 of 1) protein_coding-intron (ENSMUSG00000028874.14, intron 1 of 12) -2506 ENSMUSG00000028874.14 ENSMUSG00000028874 ENSMUST00000171223 Fgr protein_coding Interval_170390 chr9 107624302 107625014 + 0 NA intron (ENSMUSG00000032562.13, intron 1 of 3) protein_coding-intron (ENSMUSG00000032562.13, intron 1 of 8) -3710 ENSMUSG00000032562.13 ENSMUSG00000032562 ENSMUST00000193876 Gnai2 protein_coding Interval_163778 chr9 25591418 25593721 + 0 NA intron (ENSMUSG00000036611.5, intron 6 of 7) protein_coding-intron (ENSMUSG00000036611.5, intron 6 of 7) -22764 ENSMUSG00000077697.1 ENSMUSG00000077697 ENSMUST00000104509 Gm25346 snoRNA Interval_86264 chr19 38252251 38253020 + 0 NA Intergenic Intergenic -11942 ENSMUSG00000067242.11 ENSMUSG00000067242 ENSMUST00000130039 Lgi1 protein_coding Interval_130758 chr5 130198491 130198845 + 0 NA intron (ENSMUSG00000025340.14, intron 4 of 6) protein_coding-intron (ENSMUSG00000025340.14, intron 3 of 7) 9894 ENSMUSG00000094092.1 ENSMUSG00000094092 ENSMUST00000119542 Gm15921 processed_pseudogene Interval_84069 chr19 7033792 7034377 + 0 NA intron (ENSMUSG00000024966.9, intron 4 of 13) protein_coding-intron (ENSMUSG00000024966.9, intron 4 of 13) 5883 ENSMUSG00000024966.9 ENSMUSG00000024966 ENSMUST00000025918 Stip1 protein_coding Interval_76940 chr17 85072558 85073392 + 0 NA intron (ENSMUSG00000024127.15, intron 2 of 8) protein_coding-intron (ENSMUSG00000024127.15, intron 7 of 13) 4499 ENSMUSG00000024127.15 ENSMUSG00000024127 ENSMUST00000234393 Prepl protein_coding Interval_171735 chr9 120591618 120592010 + 0 NA Intergenic Intergenic 11679 ENSMUSG00000110962.1 ENSMUSG00000110962 ENSMUST00000213466 Gm47062 unprocessed_pseudogene Interval_61572 chr15 82516384 82517969 + 0 NA exon (ENSMUSG00000047347.7, exon 1 of 1) processed_pseudogene-exon (ENSMUSG00000047347.7, exon 1 of 1) 865 ENSMUSG00000047347.7 ENSMUSG00000047347 ENSMUST00000051363 Tdg-ps processed_pseudogene Interval_24919 chr11 41320461 41320719 + 0 NA Intergenic Intergenic -57488 ENSMUSG00000081112.1 ENSMUSG00000081112 ENSMUST00000121214 Gm12140 processed_pseudogene Interval_57750 chr15 18381293 18381566 + 0 NA Intergenic Intergenic 4012 ENSMUSG00000115358.1 ENSMUSG00000115358 ENSMUST00000227289 Gm49138 processed_pseudogene Interval_127654 chr5 106320101 106320362 + 0 NA Intergenic Intergenic -1109 ENSMUSG00000105508.1 ENSMUSG00000105508 ENSMUST00000200592 Gm32921 lincRNA Interval_133908 chr6 14928495 14929303 + 0 NA intron (ENSMUSG00000029563.16, intron 1 of 3) protein_coding-intron (ENSMUSG00000029563.16, intron 1 of 18) 27448 ENSMUSG00000029563.16 ENSMUSG00000029563 ENSMUST00000115475 Foxp2 protein_coding Interval_171401 chr9 117512048 117512724 + 0 NA intron (ENSMUSG00000039607.17, intron 1 of 14) protein_coding-intron (ENSMUSG00000039607.17, intron 1 of 14) 109407 ENSMUSG00000092504.1 ENSMUSG00000092504 ENSMUST00000173358 Gm20396 processed_pseudogene Interval_44603 chr13 46652022 46652393 + 0 NA Intergenic Intergenic -18984 ENSMUSG00000069237.8 ENSMUSG00000069237 ENSMUST00000150376 Fam8a1 protein_coding Interval_39271 chr12 86360902 86361377 + 0 NA promoter-TSS (ENSMUSG00000021255.17) protein_coding-promoter-TSS (ENSMUSG00000021255.17) 13162 ENSMUSG00000113230.1 ENSMUSG00000113230 ENSMUST00000221001 Gm48101 processed_pseudogene Interval_166414 chr9 59271634 59271882 + 0 NA Intergenic Intergenic -19800 ENSMUSG00000025236.11 ENSMUSG00000025236 ENSMUST00000215994 Adpgk protein_coding Interval_50350 chr14 11993960 11994464 + 0 NA intron (ENSMUSG00000021745.14, intron 4 of 29) protein_coding-intron (ENSMUSG00000021745.14, intron 4 of 29) -13004 ENSMUSG00000085883.2 ENSMUSG00000085883 ENSMUST00000151564 Gm3848 antisense Interval_62062 chr15 86165001 86166629 + 0 NA intron (ENSMUSG00000035891.16, intron 2 of 12) protein_coding-intron (ENSMUSG00000035891.16, intron 2 of 12) -13367 ENSMUSG00000035891.16 ENSMUSG00000035891 ENSMUST00000156546 Cerk protein_coding Interval_24815 chr11 39588902 39589949 + 0 NA Intergenic Intergenic 138287 ENSMUSG00000083806.1 ENSMUSG00000083806 ENSMUST00000117479 Gm12131 processed_pseudogene Interval_150715 chr7 113710632 113711551 + 0 NA Intergenic Intergenic -2649 ENSMUSG00000073862.4 ENSMUSG00000073862 ENSMUST00000098100 Gm5600 lincRNA Interval_106140 chr3 93607730 93608230 + 0 NA Intergenic Intergenic 21772 ENSMUSG00000103406.1 ENSMUSG00000103406 ENSMUST00000193248 Gm5541 unprocessed_pseudogene Interval_174698 chrX 163315121 163315751 + 0 NA Intergenic Intergenic 11933 ENSMUSG00000082970.1 ENSMUSG00000082970 ENSMUST00000122155 Gm15214 processed_pseudogene Interval_157370 chr8 69912973 69913286 + 0 NA exon (ENSMUSG00000036180.15, exon 10 of 13) protein_coding-exon (ENSMUSG00000036180.15, exon 10 of 13) -10417 ENSMUSG00000048967.16 ENSMUSG00000048967 ENSMUST00000152456 Yjefn3 protein_coding Interval_136009 chr6 49502418 49502588 + 0 NA Intergenic Intergenic 41224 ENSMUSG00000108266.1 ENSMUSG00000108266 ENSMUST00000204010 Gm5305 processed_pseudogene Interval_33740 chr11 118222709 118223551 + 0 NA intron (ENSMUSG00000017132.17, intron 1 of 12) protein_coding-intron (ENSMUSG00000017132.17, intron 1 of 12) -10388 ENSMUSG00000017132.17 ENSMUSG00000017132 ENSMUST00000151165 Cyth1 protein_coding Interval_68609 chr16 81199802 81201090 + 0 NA promoter-TSS (ENSMUSG00000022762.18) protein_coding-promoter-TSS (ENSMUSG00000022762.18) 61569 ENSMUSG00000084671.1 ENSMUSG00000084671 ENSMUST00000122722 Gm26023 misc_RNA Interval_78963 chr18 23126988 23127183 + 0 NA Intergenic Intergenic -20009 ENSMUSG00000077680.1 ENSMUSG00000077680 ENSMUST00000104492 Gm22495 snoRNA Interval_135396 chr6 38991472 38992778 + 0 NA intron (ENSMUSG00000029925.13, intron 1 of 6) protein_coding-intron (ENSMUSG00000029925.13, intron 4 of 12) -7800 ENSMUSG00000106737.1 ENSMUSG00000106737 ENSMUST00000201966 Gm42962 antisense Interval_34983 chr12 16342053 16342284 + 0 NA Intergenic Intergenic -109941 ENSMUSG00000113892.1 ENSMUSG00000113892 ENSMUST00000220475 Gm48605 lincRNA Interval_101856 chr3 10146913 10147082 + 0 NA Intergenic Intergenic 36932 ENSMUSG00000052468.7 ENSMUSG00000052468 ENSMUST00000029034 Pmp2 protein_coding Interval_167501 chr9 70086275 70089018 + 0 NA TTS (ENSMUSG00000032224.15) protein_coding-TTS (ENSMUSG00000032224.15) 14723 ENSMUSG00000111043.1 ENSMUSG00000111043 ENSMUST00000215316 2210414F02Rik lincRNA Interval_139282 chr6 97856444 97857460 + 0 NA intron (ENSMUSG00000035158.15, intron 1 of 9) protein_coding-intron (ENSMUSG00000035158.15, intron 1 of 9) 33587 ENSMUSG00000083086.1 ENSMUSG00000083086 ENSMUST00000118062 Gm15531 processed_pseudogene Interval_63059 chr15 98880678 98882024 + 0 NA promoter-TSS (ENSMUSG00000023755.10) protein_coding-promoter-TSS (ENSMUSG00000023755.10) -450 ENSMUSG00000023755.10 ENSMUSG00000023755 ENSMUST00000155699 Rhebl1 protein_coding Interval_170849 chr9 111161389 111161602 + 0 NA intron (ENSMUSG00000032497.19, intron 4 of 7) protein_coding-intron (ENSMUSG00000032497.19, intron 4 of 14) -12721 ENSMUSG00000032497.19 ENSMUSG00000032497 ENSMUST00000196906 Lrrfip2 protein_coding Interval_128075 chr5 110708637 110708944 + 0 NA promoter-TSS (ENSMUSG00000029505.17) protein_coding-promoter-TSS (ENSMUSG00000029505.17) -16609 ENSMUSG00000077254.1 ENSMUSG00000077254 ENSMUST00000104066 Gm26079 snoRNA Interval_115860 chr4 105281732 105283959 + 0 NA Intergenic Intergenic 92101 ENSMUSG00000081819.1 ENSMUSG00000081819 ENSMUST00000118507 Gm12722 processed_pseudogene Interval_101198 chr2 179409404 179409591 + 0 NA Intergenic Intergenic -5439 ENSMUSG00000039138.1 ENSMUSG00000039138 ENSMUST00000041998 4930591A17Rik lincRNA Interval_162302 chr8 126920618 126921478 + 0 NA Intergenic Intergenic -12833 ENSMUSG00000110697.1 ENSMUSG00000110697 ENSMUST00000212639 Gm31718 lincRNA Interval_22046 chr11 5980729 5981051 + 0 NA intron (ENSMUSG00000057897.14, intron 13 of 17) protein_coding-intron (ENSMUSG00000057897.14, intron 14 of 18) 3248 ENSMUSG00000057897.14 ENSMUSG00000057897 ENSMUST00000129098 Camk2b protein_coding Interval_54818 chr14 75455983 75457221 + 0 NA intron (ENSMUSG00000091722.2, intron 1 of 1) protein_coding-intron (ENSMUSG00000091722.2, intron 1 of 1) 620 ENSMUSG00000091722.2 ENSMUSG00000091722 ENSMUST00000164848 Siah3 protein_coding Interval_141281 chr6 126810208 126810593 + 0 NA intron (ENSMUSG00000118420.1, intron 1 of 5) transcribed_unitary_pseudogene-intron (ENSMUSG00000118420.1, intron 1 of 5) 244 ENSMUSG00000118420.1 ENSMUSG00000118420 ENSMUST00000238440 Gm29788 transcribed_unitary_pseudogene Interval_164248 chr9 34381862 34382647 + 0 NA Intergenic Intergenic -76927 ENSMUSG00000110925.1 ENSMUSG00000110925 ENSMUST00000216503 Gm47858 lincRNA Interval_55815 chr14 100477675 100478869 + 0 NA exon (ENSMUSG00000115821.1, exon 2 of 2) lincRNA-exon (ENSMUSG00000115821.1, exon 2 of 2) 18849 ENSMUSG00000115821.1 ENSMUSG00000115821 ENSMUST00000227740 6330576A10Rik lincRNA Interval_150945 chr7 116566633 116567403 + 0 NA Intergenic Intergenic 20153 ENSMUSG00000108456.1 ENSMUSG00000108456 ENSMUST00000206533 4732496C06Rik lincRNA Interval_68845 chr16 87541870 87542121 + 0 NA Intergenic Intergenic 7456 ENSMUSG00000090753.1 ENSMUSG00000090753 ENSMUST00000079114 Rpl31-ps4 processed_pseudogene Interval_83750 chr19 4388705 4389182 + 0 NA exon (ENSMUSG00000054611.17, exon 3 of 4) protein_coding-exon (ENSMUSG00000054611.17, exon 3 of 4) -50380 ENSMUSG00000087132.8 ENSMUSG00000087132 ENSMUST00000136632 A930001C03Rik processed_transcript Interval_100277 chr2 168121042 168121241 + 0 NA intron (ENSMUSG00000118526.2, intron 2 of 7) unitary_pseudogene-intron (ENSMUSG00000118526.2, intron 2 of 7) 6264 ENSMUSG00000118526.2 ENSMUSG00000118526 ENSMUST00000239040 AL831766.1 unitary_pseudogene Interval_132325 chr5 144196438 144196732 + 0 NA intron (ENSMUSG00000066621.12, intron 21 of 23) protein_coding-intron (ENSMUSG00000066621.12, intron 22 of 24) 6299 ENSMUSG00000052271.7 ENSMUSG00000052271 ENSMUST00000060747 Bhlha15 protein_coding Interval_42291 chr13 11836112 11837417 + 0 NA intron (ENSMUSG00000021313.16, intron 11 of 24) protein_coding-intron (ENSMUSG00000021313.16, intron 12 of 104) -15030 ENSMUSG00000113269.1 ENSMUSG00000113269 ENSMUST00000221204 Gm47494 TEC Interval_155772 chr8 37246328 37246559 + 0 NA Intergenic Intergenic -4378 ENSMUSG00000109795.1 ENSMUSG00000109795 ENSMUST00000210784 Gm45522 processed_pseudogene Interval_174424 chrX 152151465 152152040 + 0 NA intron (ENSMUSG00000041115.16, intron 1 of 14) protein_coding-intron (ENSMUSG00000041115.16, intron 1 of 13) 7484 ENSMUSG00000041115.16 ENSMUSG00000041115 ENSMUST00000096275 Iqsec2 protein_coding Interval_23786 chr11 26244437 26244620 + 0 NA Intergenic Intergenic 42288 ENSMUSG00000099015.1 ENSMUSG00000099015 ENSMUST00000185114 Mir6372 miRNA Interval_117654 chr4 125313049 125313945 + 0 NA Intergenic Intergenic 84900 ENSMUSG00000087010.1 ENSMUSG00000087010 ENSMUST00000130055 1700041M05Rik lincRNA Interval_26830 chr11 60922168 60923669 + 0 NA intron (ENSMUSG00000042549.10, intron 1 of 1) antisense-intron (ENSMUSG00000042549.10, intron 1 of 1) -8168 ENSMUSG00000018931.3 ENSMUSG00000018931 ENSMUST00000143800 Natd1 protein_coding Interval_7812 chr1 133863504 133864108 + 0 NA Intergenic Intergenic 28617 ENSMUSG00000100830.1 ENSMUSG00000100830 ENSMUST00000190927 Gm28441 lincRNA Interval_143114 chr6 149450173 149450597 + 0 NA intron (ENSMUSG00000003452.15, intron 1 of 9) protein_coding-intron (ENSMUSG00000003452.15, intron 1 of 9) -15912 ENSMUSG00000082072.1 ENSMUSG00000082072 ENSMUST00000119145 Gm15785 processed_pseudogene Interval_40853 chr12 108869521 108870627 + 0 NA intron (ENSMUSG00000021266.16, intron 1 of 2) protein_coding-intron (ENSMUSG00000021266.16, intron 6 of 9) 5207 ENSMUSG00000021266.16 ENSMUSG00000021266 ENSMUST00000160974 Wars protein_coding Interval_116852 chr4 117704178 117704662 + 0 NA Intergenic Intergenic 4232 ENSMUSG00000086320.1 ENSMUSG00000086320 ENSMUST00000156081 Gm12840 lincRNA Interval_109925 chr3 151770747 151771642 + 0 NA Intergenic Intergenic -8302 ENSMUSG00000039146.5 ENSMUSG00000039146 ENSMUST00000046739 Ifi44l protein_coding Interval_134199 chr6 22743739 22744010 + 0 NA Intergenic Intergenic 10141 ENSMUSG00000106803.1 ENSMUSG00000106803 ENSMUST00000201693 Gm8930 processed_pseudogene Interval_172644 chrX 38883588 38884209 + 0 NA intron (ENSMUSG00000051361.7, intron 1 of 3) protein_coding-intron (ENSMUSG00000051361.7, intron 1 of 3) 22730 ENSMUSG00000081147.1 ENSMUSG00000081147 ENSMUST00000117850 Gm6024 processed_pseudogene Interval_8343 chr1 137545482 137546276 + 0 NA Intergenic Intergenic -14649 ENSMUSG00000103070.1 ENSMUSG00000103070 ENSMUST00000192122 Gm37903 TEC Interval_136576 chr6 55885895 55886237 + 0 NA promoter-TSS (ENSMUSG00000037973.6) protein_coding-promoter-TSS (ENSMUSG00000037973.6) -759 ENSMUSG00000037973.6 ENSMUSG00000037973 ENSMUST00000169699 Itprid1 protein_coding Interval_124944 chr5 61301940 61302188 + 0 NA Intergenic Intergenic 36669 ENSMUSG00000106370.2 ENSMUSG00000106370 ENSMUST00000198954 Gm43382 processed_pseudogene Interval_69236 chr16 91591258 91592121 + 0 NA intron (ENSMUSG00000022964.14, intron 1 of 5) protein_coding-intron (ENSMUSG00000022964.14, intron 1 of 6) 6111 ENSMUSG00000022964.14 ENSMUSG00000022964 ENSMUST00000141885 Tmem50b protein_coding Interval_56133 chr14 106500568 106501095 + 0 NA Intergenic Intergenic -14339 ENSMUSG00000099794.1 ENSMUSG00000099794 ENSMUST00000186643 1700128A07Rik lincRNA Interval_101201 chr2 179434970 179435976 + 0 NA Intergenic Intergenic 20537 ENSMUSG00000039138.1 ENSMUSG00000039138 ENSMUST00000041998 4930591A17Rik lincRNA Interval_37919 chr12 73052124 73054619 + 0 NA intron (ENSMUSG00000051367.8, intron 1 of 1) protein_coding-intron (ENSMUSG00000051367.8, intron 1 of 1) -10556 ENSMUSG00000051367.8 ENSMUSG00000051367 ENSMUST00000175677 Six1 protein_coding Interval_122971 chr5 28070625 28072162 + 0 NA promoter-TSS (ENSMUSG00000045294.11) protein_coding-promoter-TSS (ENSMUSG00000045294.11) -3273 ENSMUSG00000045294.11 ENSMUSG00000045294 ENSMUST00000199728 Insig1 protein_coding Interval_20963 chr10 122802195 122804090 + 0 NA intron (ENSMUSG00000034613.12, intron 3 of 5) protein_coding-intron (ENSMUSG00000034613.12, intron 3 of 9) -10659 ENSMUSG00000112220.1 ENSMUSG00000112220 ENSMUST00000220013 Gm36208 antisense Interval_153196 chr7 142316451 142317178 + 0 NA Intergenic Intergenic -10520 ENSMUSG00000083812.3 ENSMUSG00000083812 ENSMUST00000119351 Gm5054 processed_pseudogene Interval_149382 chr7 97927780 97928043 + 0 NA intron (ENSMUSG00000035582.13, intron 1 of 17) protein_coding-intron (ENSMUSG00000035582.13, intron 1 of 17) 9666 ENSMUSG00000108424.1 ENSMUSG00000108424 ENSMUST00000206161 Gm44590 processed_pseudogene Interval_118230 chr4 129640221 129641292 + 0 NA promoter-TSS (ENSMUSG00000053841.15) protein_coding-promoter-TSS (ENSMUSG00000053841.15) 222 ENSMUSG00000053841.15 ENSMUSG00000053841 ENSMUST00000130017 Txlna protein_coding Interval_90297 chr2 29643131 29644928 + 0 NA intron (ENSMUSG00000039844.20, intron 1 of 23) protein_coding-intron (ENSMUSG00000039844.20, intron 1 of 25) 214 ENSMUSG00000039844.20 ENSMUSG00000039844 ENSMUST00000123953 Rapgef1 protein_coding Interval_11151 chr1 179694260 179695137 + 0 NA TTS (ENSMUSG00000087236.3) protein_coding-TTS (ENSMUSG00000087236.3) 5582 ENSMUSG00000087236.3 ENSMUSG00000087236 ENSMUST00000223392 Kif28 protein_coding Interval_45678 chr13 56781362 56781555 + 0 NA intron (ENSMUSG00000021541.14, intron 9 of 10) protein_coding-intron (ENSMUSG00000021541.14, intron 10 of 11) -27631 ENSMUSG00000110086.1 ENSMUSG00000110086 ENSMUST00000210744 Gm45623 protein_coding Interval_130453 chr5 127722247 127722514 + 0 NA Intergenic Intergenic 90118 ENSMUSG00000049971.17 ENSMUSG00000049971 ENSMUST00000134529 Glt1d1 protein_coding Interval_102943 chr3 33062006 33062460 + 0 NA intron (ENSMUSG00000087625.1, intron 3 of 7) protein_coding-intron (ENSMUSG00000027674.16, intron 3 of 14) 14123 ENSMUSG00000102498.1 ENSMUSG00000102498 ENSMUST00000193649 Gm19445 TEC Interval_127704 chr5 106825423 106826074 + 0 NA Intergenic Intergenic 53950 ENSMUSG00000098703.1 ENSMUSG00000098703 ENSMUST00000183903 Gm27527 miRNA Interval_64115 chr16 8496965 8497159 + 0 NA Intergenic Intergenic -16321 ENSMUSG00000077557.1 ENSMUSG00000077557 ENSMUST00000104369 Gm23706 snoRNA Interval_37626 chr12 70527894 70528082 + 0 NA intron (ENSMUSG00000113302.1, intron 1 of 4) lincRNA-intron (ENSMUSG00000113302.1, intron 1 of 4) 5390 ENSMUSG00000113302.1 ENSMUSG00000113302 ENSMUST00000221234 Gm32219 lincRNA Interval_53101 chr14 54448844 54449594 + 0 NA TTS (ENSMUSG00000096030.1) snRNA-TTS (ENSMUSG00000096030.1) 845 ENSMUSG00000096030.1 ENSMUSG00000096030 ENSMUST00000179714 Gm24424 snRNA Interval_147913 chr7 75514118 75514608 + 0 NA intron (ENSMUSG00000066406.16, intron 1 of 3) protein_coding-intron (ENSMUSG00000066406.16, intron 1 of 36) 29502 ENSMUSG00000108560.1 ENSMUSG00000108560 ENSMUST00000205567 Gm44695 TEC Interval_58353 chr15 33093912 33094412 + 0 NA intron (ENSMUSG00000039007.10, intron 1 of 3) protein_coding-intron (ENSMUSG00000039007.10, intron 1 of 7) 10910 ENSMUSG00000039007.10 ENSMUSG00000039007 ENSMUST00000226896 Cpq protein_coding Interval_137644 chr6 77380497 77380731 + 0 NA exon (ENSMUSG00000108077.1, exon 1 of 1) TEC-exon (ENSMUSG00000108077.1, exon 1 of 1) 1845 ENSMUSG00000108077.1 ENSMUSG00000108077 ENSMUST00000204215 6330415B21Rik TEC Interval_7743 chr1 133382127 133382453 + 0 NA TTS (ENSMUSG00000070643.11) protein_coding-TTS (ENSMUSG00000070643.11) 16526 ENSMUSG00000070644.13 ENSMUSG00000070644 ENSMUST00000131450 Etnk2 protein_coding Interval_9583 chr1 159736501 159736768 + 0 NA promoter-TSS (ENSMUSG00000015829.13) protein_coding-promoter-TSS (ENSMUSG00000015829.13) 54972 ENSMUSG00000073528.7 ENSMUSG00000073528 ENSMUST00000194909 Gm10530 processed_transcript Interval_68263 chr16 71511268 71511771 + 0 NA Intergenic Intergenic -152269 ENSMUSG00000065924.1 ENSMUSG00000065924 ENSMUST00000083990 Gm22797 snoRNA Interval_143050 chr6 148924695 148925635 + 0 NA TTS (ENSMUSG00000039985.14) protein_coding-TTS (ENSMUSG00000039985.14) -4630 ENSMUSG00000108258.1 ENSMUSG00000108258 ENSMUST00000203924 Gm43913 lincRNA Interval_70167 chr17 5909167 5909867 + 0 NA intron (ENSMUSG00000002365.10, intron 9 of 17) protein_coding-intron (ENSMUSG00000002365.10, intron 9 of 17) -29570 ENSMUSG00000116734.1 ENSMUSG00000116734 ENSMUST00000231634 Gm8376 processed_pseudogene Interval_163964 chr9 29915944 29916168 + 0 NA intron (ENSMUSG00000059974.10, intron 1 of 2) protein_coding-intron (ENSMUSG00000059974.10, intron 1 of 7) 147663 ENSMUSG00000111175.1 ENSMUSG00000111175 ENSMUST00000214849 Gm19640 processed_pseudogene Interval_170602 chr9 109183366 109184203 + 0 NA intron (ENSMUSG00000049314.11, intron 5 of 8) protein_coding-intron (ENSMUSG00000049314.11, intron 6 of 9) 12178 ENSMUSG00000049314.11 ENSMUSG00000049314 ENSMUST00000199102 Fbxw13 protein_coding Interval_82777 chr18 77028628 77029806 + 0 NA intron (ENSMUSG00000025420.13, intron 1 of 5) protein_coding-intron (ENSMUSG00000025420.13, intron 1 of 13) 18070 ENSMUSG00000025420.13 ENSMUSG00000025420 ENSMUST00000123650 Katnal2 protein_coding Interval_116941 chr4 118336413 118337557 + 0 NA Intergenic Intergenic -23005 ENSMUSG00000006395.16 ENSMUSG00000006395 ENSMUST00000132882 Hyi polymorphic_pseudogene Interval_140007 chr6 113366767 113368888 + 0 NA intron (ENSMUSG00000048930.12, intron 2 of 2) protein_coding-intron (ENSMUSG00000048930.12, intron 8 of 8) 9929 ENSMUSG00000048930.12 ENSMUSG00000048930 ENSMUST00000193384 Tada3 protein_coding Interval_80767 chr18 46930691 46932677 + 0 NA intron (ENSMUSG00000073568.2, intron 4 of 4) protein_coding-intron (ENSMUSG00000073568.2, intron 3 of 3) 9869 ENSMUSG00000073568.2 ENSMUSG00000073568 ENSMUST00000097580 Arl14epl protein_coding Interval_16843 chr10 69153599 69153829 + 0 NA intron (ENSMUSG00000019944.14, intron 1 of 4) protein_coding-intron (ENSMUSG00000019944.14, intron 1 of 4) -2582 ENSMUSG00000111941.1 ENSMUSG00000111941 ENSMUST00000220371 Gm33263 lincRNA Interval_85869 chr19 32546226 32546424 + 0 NA intron (ENSMUSG00000118168.1, intron 2 of 3) lincRNA-intron (ENSMUSG00000118168.1, intron 2 of 3) 2977 ENSMUSG00000118168.1 ENSMUSG00000118168 ENSMUST00000237957 Gm36419 lincRNA Interval_58638 chr15 36737586 36738280 + 0 NA Intergenic Intergenic 14286 ENSMUSG00000115103.1 ENSMUSG00000115103 ENSMUST00000226969 Gm49263 lincRNA Interval_65389 chr16 22075623 22076844 + 0 NA intron (ENSMUSG00000033581.17, intron 8 of 14) protein_coding-intron (ENSMUSG00000033581.17, intron 9 of 15) 22723 ENSMUSG00000068487.6 ENSMUSG00000068487 ENSMUST00000132879 Ndufa11b processed_pseudogene Interval_120422 chr4 148514295 148515804 + 0 NA intron (ENSMUSG00000028991.15, intron 30 of 57) protein_coding-intron (ENSMUSG00000028991.15, intron 30 of 57) -14589 ENSMUSG00000028989.3 ENSMUSG00000028989 ENSMUST00000030840 Angptl7 protein_coding Interval_146244 chr7 44941171 44941784 + 0 NA Intergenic Intergenic -12837 ENSMUSG00000059891.14 ENSMUSG00000059891 ENSMUST00000208475 Tsks protein_coding Interval_93534 chr2 73899446 73899620 + 0 NA Intergenic Intergenic 11758 ENSMUSG00000018770.9 ENSMUSG00000018770 ENSMUST00000155474 Atp5g3 protein_coding Interval_46294 chr13 63496459 63497301 + 0 NA intron (ENSMUSG00000021461.17, intron 1 of 6) protein_coding-intron (ENSMUSG00000021461.17, intron 1 of 6) 42798 ENSMUSG00000021466.12 ENSMUSG00000021466 ENSMUST00000220588 Ptch1 protein_coding Interval_70938 chr17 16354685 16354900 + 0 NA Intergenic Intergenic -33692 ENSMUSG00000116614.1 ENSMUSG00000116614 ENSMUST00000231650 Gm46610 processed_pseudogene Interval_160993 chr8 116732182 116733757 + 0 NA promoter-TSS (ENSMUSG00000031758.10) protein_coding-promoter-TSS (ENSMUSG00000031758.10) 22 ENSMUSG00000031758.10 ENSMUSG00000031758 ENSMUST00000109102 Cdyl2 protein_coding Interval_7389 chr1 130796885 130797348 + 0 NA Intergenic Intergenic -3786 ENSMUSG00000026415.11 ENSMUSG00000026415 ENSMUST00000027670 Fcamr protein_coding Interval_140010 chr6 113392137 113393218 + 0 NA promoter-TSS (ENSMUSG00000030276.19) protein_coding-promoter-TSS (ENSMUSG00000030276.19) -500 ENSMUSG00000030276.19 ENSMUSG00000030276 ENSMUST00000203880 Ttll3 protein_coding Interval_151633 chr7 125551722 125552711 + 0 NA promoter-TSS (ENSMUSG00000030748.9) protein_coding-promoter-TSS (ENSMUSG00000030748.9) -71 ENSMUSG00000030748.9 ENSMUSG00000030748 ENSMUST00000206846 Il4ra protein_coding Interval_109961 chr3 152193547 152194107 + 0 NA promoter-TSS (ENSMUSG00000028035.13) protein_coding-promoter-TSS (ENSMUSG00000028035.13) 16230 ENSMUSG00000028035.13 ENSMUSG00000028035 ENSMUST00000196291 Dnajb4 protein_coding Interval_126991 chr5 99241964 99242548 + 0 NA intron (ENSMUSG00000089809.9, intron 5 of 16) protein_coding-intron (ENSMUSG00000089809.9, intron 2 of 13) -31839 ENSMUSG00000105686.1 ENSMUSG00000105686 ENSMUST00000196434 Gm35394 lincRNA Interval_51958 chr14 34258016 34259418 + 0 NA intron (ENSMUSG00000041471.9, intron 2 of 5) protein_coding-intron (ENSMUSG00000041471.9, intron 5 of 10) -1615 ENSMUSG00000115649.1 ENSMUSG00000115649 ENSMUST00000227225 Gm18813 processed_pseudogene Interval_67603 chr16 52154688 52155441 + 0 NA intron (ENSMUSG00000022637.11, intron 10 of 18) protein_coding-intron (ENSMUSG00000022637.11, intron 10 of 17) 2538 ENSMUSG00000022637.11 ENSMUSG00000022637 ENSMUST00000228247 Cblb protein_coding Interval_132145 chr5 142940539 142940778 + 0 NA Intergenic Intergenic -19718 ENSMUSG00000029581.14 ENSMUSG00000029581 ENSMUST00000135293 Fscn1 protein_coding Interval_163448 chr9 21488154 21488448 + 0 NA intron (ENSMUSG00000033335.17, intron 6 of 9) protein_coding-intron (ENSMUSG00000033335.17, intron 12 of 20) 8263 ENSMUSG00000065547.1 ENSMUSG00000065547 ENSMUST00000083613 Mir199a-1 miRNA Interval_79858 chr18 35603623 35603836 + 0 NA intron (ENSMUSG00000037058.16, intron 1 of 3) protein_coding-intron (ENSMUSG00000037058.16, intron 1 of 3) -5156 ENSMUSG00000118030.1 ENSMUSG00000118030 ENSMUST00000237282 Gm50163 antisense Interval_65067 chr16 18818277 18818529 + 0 NA TTS (ENSMUSG00000005262.13) protein_coding-TTS (ENSMUSG00000005262.13) 6579 ENSMUSG00000005262.13 ENSMUSG00000005262 ENSMUST00000170325 Ufd1 protein_coding Interval_151761 chr7 126486882 126487798 + 0 NA promoter-TSS (ENSMUSG00000073838.10) protein_coding-promoter-TSS (ENSMUSG00000073838.10) -2031 ENSMUSG00000073838.10 ENSMUSG00000073838 ENSMUST00000206572 Tufm protein_coding Interval_64526 chr16 13073928 13074547 + 0 NA Intergenic Intergenic -58154 ENSMUSG00000022545.13 ENSMUSG00000022545 ENSMUST00000156393 Ercc4 protein_coding Interval_149174 chr7 95912705 95914256 + 0 NA promoter-TSS (ENSMUSG00000108628.1) processed_pseudogene-promoter-TSS (ENSMUSG00000108628.1) -94 ENSMUSG00000108628.1 ENSMUSG00000108628 ENSMUST00000205327 Gm5037 processed_pseudogene Interval_42581 chr13 15802185 15802647 + 0 NA exon (ENSMUSG00000113960.1, exon 1 of 3) lincRNA-exon (ENSMUSG00000113960.1, exon 1 of 3) 214 ENSMUSG00000113960.1 ENSMUSG00000113960 ENSMUST00000222681 4933412O06Rik lincRNA Interval_108030 chr3 120570123 120570325 + 0 NA Intergenic Intergenic 39869 ENSMUSG00000089027.1 ENSMUSG00000089027 ENSMUST00000158402 Gm25013 snoRNA Interval_76828 chr17 84362827 84364729 + 0 NA intron (ENSMUSG00000024251.10, intron 11 of 14) protein_coding-intron (ENSMUSG00000024251.10, intron 26 of 37) -27651 ENSMUSG00000096415.1 ENSMUSG00000096415 ENSMUST00000179017 Gm24722 snRNA Interval_138093 chr6 85125286 85126528 + 0 NA exon (ENSMUSG00000072952.7, exon 1 of 3) lincRNA-exon (ENSMUSG00000072952.7, exon 1 of 3) 218 ENSMUSG00000072952.7 ENSMUSG00000072952 ENSMUST00000203386 Gm5878 lincRNA Interval_66672 chr16 36027908 36028454 + 0 NA intron (ENSMUSG00000022905.12, intron 10 of 13) protein_coding-intron (ENSMUSG00000022905.12, intron 10 of 13) -13009 ENSMUSG00000034379.9 ENSMUSG00000034379 ENSMUST00000042203 Wdr5b protein_coding Interval_149891 chr7 102302826 102303387 + 0 NA intron (ENSMUSG00000030987.5, intron 1 of 12) protein_coding-intron (ENSMUSG00000030987.5, intron 1 of 11) 34779 ENSMUSG00000030987.5 ENSMUSG00000030987 ENSMUST00000210544 Stim1 protein_coding Interval_88404 chr2 4857306 4857747 + 0 NA Intergenic Intergenic -22914 ENSMUSG00000083407.1 ENSMUSG00000083407 ENSMUST00000117910 Gm13176 processed_pseudogene Interval_96166 chr2 120197802 120198853 + 0 NA intron (ENSMUSG00000050211.14, intron 4 of 5) protein_coding-intron (ENSMUSG00000050211.14, intron 2 of 19) 46781 ENSMUSG00000050211.14 ENSMUSG00000050211 ENSMUST00000152263 Pla2g4e protein_coding Interval_127901 chr5 108743982 108744380 + 0 NA intron (ENSMUSG00000055385.12, intron 9 of 11) protein_coding-intron (ENSMUSG00000055385.12, intron 4 of 4) -19661 ENSMUSG00000101762.1 ENSMUSG00000101762 ENSMUST00000189659 1700047L14Rik antisense Interval_63820 chr16 3743135 3744816 + 0 NA promoter-TSS (ENSMUSG00000022529.11) protein_coding-promoter-TSS (ENSMUSG00000022529.11) -3912 ENSMUSG00000022529.11 ENSMUSG00000022529 ENSMUST00000162207 Zfp263 protein_coding Interval_57114 chr15 6624697 6625747 + 0 NA intron (ENSMUSG00000089647.2, intron 3 of 6) protein_coding-intron (ENSMUSG00000022148.16, intron 2 of 17) -18340 ENSMUSG00000089647.2 ENSMUSG00000089647 ENSMUST00000228703 Gm2245 antisense Interval_40617 chr12 106053360 106054071 + 0 NA intron (ENSMUSG00000021115.15, intron 5 of 13) protein_coding-intron (ENSMUSG00000021115.15, intron 5 of 14) 27908 ENSMUSG00000021115.15 ENSMUSG00000021115 ENSMUST00000220629 Vrk1 protein_coding Interval_38286 chr12 76916162 76916838 + 0 NA exon (ENSMUSG00000033373.16, exon 11 of 12) protein_coding-exon (ENSMUSG00000033373.16, exon 11 of 12) 25293 ENSMUSG00000112008.1 ENSMUSG00000112008 ENSMUST00000218256 Gm47218 TEC Interval_99257 chr2 158422395 158422717 + 0 NA intron (ENSMUSG00000027652.15, intron 2 of 9) protein_coding-intron (ENSMUSG00000027652.15, intron 2 of 29) -15738 ENSMUSG00000083715.1 ENSMUSG00000083715 ENSMUST00000120121 Gm14202 processed_pseudogene Interval_34680 chr12 8656889 8657404 + 0 NA Intergenic Intergenic -16988 ENSMUSG00000020594.14 ENSMUSG00000020594 ENSMUST00000171608 Pum2 protein_coding Interval_135872 chr6 48078669 48079836 + 0 NA intron (ENSMUSG00000057691.8, intron 1 of 2) protein_coding-intron (ENSMUSG00000057691.8, intron 4 of 6) 3026 ENSMUSG00000057691.8 ENSMUSG00000057691 ENSMUST00000203994 Zfp746 protein_coding Interval_48519 chr13 99679451 99679875 + 0 NA Intergenic Intergenic 12866 ENSMUSG00000077673.1 ENSMUSG00000077673 ENSMUST00000104485 Gm24471 snoRNA Interval_126200 chr5 82160907 82161251 + 0 NA Intergenic Intergenic -36369 ENSMUSG00000099863.1 ENSMUSG00000099863 ENSMUST00000186079 1700031L13Rik protein_coding Interval_78401 chr18 12507430 12509449 + 0 NA intron (ENSMUSG00000024421.16, intron 2 of 37) protein_coding-intron (ENSMUSG00000024421.16, intron 39 of 74) -4013 ENSMUSG00000101406.1 ENSMUSG00000101406 ENSMUST00000188118 Gm29200 antisense Interval_134599 chr6 29860185 29860704 + 0 NA intron (ENSMUSG00000029772.17, intron 1 of 6) protein_coding-intron (ENSMUSG00000029772.17, intron 1 of 16) -16235 ENSMUSG00000029772.17 ENSMUSG00000029772 ENSMUST00000128837 Ahcyl2 protein_coding Interval_119954 chr4 141096604 141096939 + 0 NA intron (ENSMUSG00000045004.3, intron 5 of 14) protein_coding-intron (ENSMUSG00000045004.3, intron 5 of 14) -7214 ENSMUSG00000045004.3 ENSMUSG00000045004 ENSMUST00000181353 Spata21 protein_coding Interval_98228 chr2 150198451 150199187 + 0 NA Intergenic Intergenic 8426 ENSMUSG00000079009.8 ENSMUSG00000079009 ENSMUST00000109929 Gm14139 protein_coding Interval_91864 chr2 50556818 50557147 + 0 NA Intergenic Intergenic 9068 ENSMUSG00000085429.1 ENSMUSG00000085429 ENSMUST00000146690 Gm13485 lincRNA Interval_119306 chr4 136764975 136766614 + 0 NA intron (ENSMUSG00000028664.14, intron 3 of 15) protein_coding-intron (ENSMUSG00000028664.14, intron 3 of 15) -71754 ENSMUSG00000028664.14 ENSMUSG00000028664 ENSMUST00000144573 Ephb2 protein_coding Interval_132669 chr5 147055411 147055869 + 0 NA intron (ENSMUSG00000016520.7, intron 1 of 9) protein_coding-intron (ENSMUSG00000016520.7, intron 1 of 9) -21924 ENSMUSG00000029642.11 ENSMUSG00000029642 ENSMUST00000196288 Polr1d protein_coding Interval_106460 chr3 96485102 96485489 + 0 NA TTS (ENSMUSG00000098392.1) rRNA-TTS (ENSMUSG00000098392.1) 134 ENSMUSG00000098392.1 ENSMUSG00000098392 ENSMUST00000183561 Gm28001 rRNA Interval_96056 chr2 119491412 119492720 + 0 NA Intergenic Intergenic 17163 ENSMUSG00000082369.1 ENSMUSG00000082369 ENSMUST00000119645 Gm14208 processed_pseudogene Interval_116415 chr4 111653458 111654059 + 0 NA intron (ENSMUSG00000061298.14, intron 3 of 3) protein_coding-intron (ENSMUSG00000061298.14, intron 11 of 12) -66305 ENSMUSG00000034401.16 ENSMUSG00000034401 ENSMUST00000132802 Spata6 protein_coding Interval_77084 chr17 86378127 86379866 + 0 NA intron (ENSMUSG00000045038.14, intron 2 of 14) protein_coding-intron (ENSMUSG00000045038.14, intron 3 of 15) -91818 ENSMUSG00000100738.1 ENSMUSG00000100738 ENSMUST00000191222 2010106C02Rik antisense Interval_161622 chr8 121630917 121631404 + 0 NA intron (ENSMUSG00000061410.6, intron 1 of 12) protein_coding-intron (ENSMUSG00000061410.6, intron 1 of 12) -22894 ENSMUSG00000098221.1 ENSMUSG00000098221 ENSMUST00000182551 Gm27030 lincRNA Interval_150916 chr7 116328779 116330139 + 0 NA Intergenic Intergenic 3798 ENSMUSG00000064741.1 ENSMUSG00000064741 ENSMUST00000082807 Snord14a snoRNA Interval_136905 chr6 63961754 63961968 + 0 NA intron (ENSMUSG00000071424.10, intron 4 of 8) protein_coding-intron (ENSMUSG00000071424.10, intron 4 of 15) 79696 ENSMUSG00000107864.1 ENSMUSG00000107864 ENSMUST00000203666 Gm44072 antisense Interval_121576 chr5 3543501 3544544 + 0 NA promoter-TSS (ENSMUSG00000105656.1) sense_intronic-promoter-TSS (ENSMUSG00000105656.1) -15 ENSMUSG00000105656.1 ENSMUSG00000105656 ENSMUST00000198296 Gm43017 sense_intronic Interval_132751 chr5 147583544 147584567 + 0 NA intron (ENSMUSG00000029648.13, intron 20 of 29) protein_coding-intron (ENSMUSG00000029648.13, intron 20 of 29) 62752 ENSMUSG00000029648.13 ENSMUSG00000029648 ENSMUST00000031652 Flt1 protein_coding Interval_140795 chr6 121392788 121393878 + 0 NA intron (ENSMUSG00000040797.16, intron 4 of 12) protein_coding-intron (ENSMUSG00000040797.16, intron 5 of 13) 36513 ENSMUSG00000030109.15 ENSMUSG00000030109 ENSMUST00000170339 Slc6a12 protein_coding Interval_25247 chr11 45873463 45874422 + 0 NA intron (ENSMUSG00000006169.20, intron 1 of 11) protein_coding-intron (ENSMUSG00000006169.20, intron 1 of 11) -8455 ENSMUSG00000006169.20 ENSMUSG00000006169 ENSMUST00000133715 Clint1 protein_coding Interval_156266 chr8 46641556 46641759 + 0 NA Intergenic Intergenic 24366 ENSMUSG00000031628.9 ENSMUSG00000031628 ENSMUST00000210534 Casp3 protein_coding Interval_22521 chr11 11420011 11420439 + 0 NA intron (ENSMUSG00000020193.3, intron 2 of 7) protein_coding-intron (ENSMUSG00000020193.3, intron 2 of 7) 7287 ENSMUSG00000064766.1 ENSMUSG00000064766 ENSMUST00000082832 Gm26458 snoRNA Interval_29397 chr11 83728419 83729169 + 0 NA Intergenic Intergenic -18146 ENSMUSG00000051748.2 ENSMUSG00000051748 ENSMUST00000070832 Wfdc21 protein_coding Interval_17761 chr10 79938391 79938636 + 0 NA intron (ENSMUSG00000019564.12, intron 3 of 8) protein_coding-intron (ENSMUSG00000019564.12, intron 3 of 8) -7766 ENSMUSG00000019564.12 ENSMUSG00000019564 ENSMUST00000135005 Arid3a protein_coding Interval_133383 chr6 4489566 4490183 + 0 NA Intergenic Intergenic -5676 ENSMUSG00000102946.2 ENSMUSG00000102946 ENSMUST00000194970 Gm37883 TEC Interval_32069 chr11 105032995 105034132 + 0 NA exon (ENSMUSG00000084120.1, exon 1 of 1) processed_pseudogene-exon (ENSMUSG00000084120.1, exon 1 of 1) 511 ENSMUSG00000084120.1 ENSMUSG00000084120 ENSMUST00000118579 Gm11624 processed_pseudogene Interval_4317 chr1 72704188 72704442 + 0 NA Intergenic Intergenic 2187 ENSMUSG00000110596.1 ENSMUSG00000110596 ENSMUST00000212794 Gm45859 processed_pseudogene Interval_104642 chr3 69037771 69038197 + 0 NA exon (ENSMUSG00000034317.14, exon 3 of 3) protein_coding-exon (ENSMUSG00000034317.14, exon 3 of 3) 6739 ENSMUSG00000034317.14 ENSMUSG00000034317 ENSMUST00000153259 Trim59 protein_coding Interval_109379 chr3 140973692 140973907 + 0 NA Intergenic Intergenic 21923 ENSMUSG00000106540.1 ENSMUSG00000106540 ENSMUST00000196030 4930590L14Rik lincRNA Interval_119865 chr4 140581665 140582960 + 0 NA promoter-TSS (ENSMUSG00000040964.16) protein_coding-promoter-TSS (ENSMUSG00000040964.16) 34753 ENSMUSG00000040964.16 ENSMUSG00000040964 ENSMUST00000154979 Arhgef10l protein_coding Interval_96088 chr2 119692231 119692600 + 0 NA TTS (ENSMUSG00000027304.9) protein_coding-TTS (ENSMUSG00000027304.9) -18581 ENSMUSG00000027304.9 ENSMUSG00000027304 ENSMUST00000126984 Rtf1 protein_coding Interval_136113 chr6 51167933 51169128 + 0 NA Intergenic Intergenic 101380 ENSMUSG00000065505.1 ENSMUSG00000065505 ENSMUST00000083571 Mir148a miRNA Interval_6610 chr1 118286685 118286937 + 0 NA Intergenic Intergenic 24651 ENSMUSG00000026374.14 ENSMUSG00000026374 ENSMUST00000186163 Tsn protein_coding Interval_154234 chr8 13629806 13630372 + 0 NA intron (ENSMUSG00000031453.16, intron 3 of 6) protein_coding-intron (ENSMUSG00000031453.16, intron 2 of 23) 47362 ENSMUSG00000031453.16 ENSMUSG00000031453 ENSMUST00000132439 Rasa3 protein_coding Interval_68047 chr16 64733837 64734474 + 0 NA Intergenic Intergenic 32501 ENSMUSG00000059920.9 ENSMUSG00000059920 ENSMUST00000076991 4930453N24Rik protein_coding Interval_122623 chr5 24303391 24303906 + 0 NA Intergenic Intergenic 22871 ENSMUSG00000038319.14 ENSMUSG00000038319 ENSMUST00000142197 Kcnh2 protein_coding Interval_32307 chr11 106808563 106808933 + 0 NA intron (ENSMUSG00000018372.13, intron 7 of 18) protein_coding-intron (ENSMUSG00000018372.13, intron 8 of 19) 7260 ENSMUSG00000084930.1 ENSMUSG00000084930 ENSMUST00000151282 Gm11706 antisense Interval_155580 chr8 34814279 34816912 + 0 NA intron (ENSMUSG00000031530.6, intron 1 of 3) protein_coding-intron (ENSMUSG00000031530.6, intron 1 of 3) 8298 ENSMUSG00000031530.6 ENSMUSG00000031530 ENSMUST00000033930 Dusp4 protein_coding Interval_73025 chr17 34204389 34206178 + 0 NA TTS (ENSMUSG00000024339.12) protein_coding-TTS (ENSMUSG00000024339.12) -1331 ENSMUSG00000092550.2 ENSMUSG00000092550 ENSMUST00000172796 Gm20496 antisense Interval_15499 chr10 49780212 49780714 + 0 NA intron (ENSMUSG00000056073.16, intron 2 of 7) protein_coding-intron (ENSMUSG00000056073.16, intron 1 of 15) -8364 ENSMUSG00000111934.1 ENSMUSG00000111934 ENSMUST00000218448 Gm48123 TEC Interval_8681 chr1 147431366 147431617 + 0 NA Intergenic Intergenic 74551 ENSMUSG00000100380.1 ENSMUSG00000100380 ENSMUST00000188981 Gm17867 unprocessed_pseudogene Interval_92774 chr2 65342008 65342654 + 0 NA intron (ENSMUSG00000061171.15, intron 7 of 11) protein_coding-intron (ENSMUSG00000061171.15, intron 7 of 11) 21669 ENSMUSG00000061171.15 ENSMUSG00000061171 ENSMUST00000141690 Slc38a11 protein_coding Interval_124389 chr5 45442312 45442617 + 0 NA intron (ENSMUSG00000015806.12, intron 1 of 3) protein_coding-intron (ENSMUSG00000015806.12, intron 4 of 6) 1132 ENSMUSG00000015806.12 ENSMUSG00000015806 ENSMUST00000127562 Qdpr protein_coding Interval_34978 chr12 16152707 16153173 + 0 NA Intergenic Intergenic -2161 ENSMUSG00000113142.1 ENSMUSG00000113142 ENSMUST00000221780 Gm18114 processed_pseudogene Interval_155711 chr8 36360052 36360705 + 0 NA Intergenic Intergenic 13255 ENSMUSG00000098154.2 ENSMUSG00000098154 ENSMUST00000183049 Gm5787 processed_pseudogene Interval_149420 chr7 98359941 98361840 + 0 NA promoter-TSS (ENSMUSG00000049580.12) protein_coding-promoter-TSS (ENSMUSG00000049580.12) -703 ENSMUSG00000049580.12 ENSMUSG00000049580 ENSMUST00000206770 Tsku protein_coding Interval_113223 chr4 50510003 50510180 + 0 NA Intergenic Intergenic 223345 ENSMUSG00000095394.1 ENSMUSG00000095394 ENSMUST00000104120 Gm25485 snoRNA Interval_121676 chr5 5096437 5097154 + 0 NA intron (ENSMUSG00000028926.15, intron 7 of 9) protein_coding-intron (ENSMUSG00000028926.15, intron 7 of 14) 43312 ENSMUSG00000106054.1 ENSMUSG00000106054 ENSMUST00000199289 Gm43623 processed_transcript Interval_25913 chr11 52517356 52517931 + 0 NA Intergenic Intergenic -30333 ENSMUSG00000083129.1 ENSMUSG00000083129 ENSMUST00000118245 Gm12210 processed_pseudogene Interval_165434 chr9 47855825 47856618 + 0 NA intron (ENSMUSG00000032076.20, intron 8 of 8) protein_coding-intron (ENSMUSG00000032076.20, intron 8 of 8) -79484 ENSMUSG00000111155.1 ENSMUSG00000111155 ENSMUST00000216522 Gm47197 TEC Interval_21475 chr10 128803868 128805795 + 0 NA promoter-TSS (ENSMUSG00000025354.5) protein_coding-promoter-TSS (ENSMUSG00000025354.5) -845 ENSMUSG00000025354.5 ENSMUSG00000025354 ENSMUST00000218765 Dnajc14 protein_coding Interval_115818 chr4 104913254 104913971 + 0 NA promoter-TSS (ENSMUSG00000078612.9) protein_coding-promoter-TSS (ENSMUSG00000078612.9) 88 ENSMUSG00000078612.9 ENSMUSG00000078612 ENSMUST00000106804 Fyb2 protein_coding Interval_8796 chr1 151226972 151227683 + 0 NA Intergenic Intergenic 17196 ENSMUSG00000114591.1 ENSMUSG00000114591 ENSMUST00000224757 Gm47996 protein_coding Interval_156861 chr8 61281806 61282084 + 0 NA intron (ENSMUSG00000099419.1, intron 4 of 4) protein_coding-intron (ENSMUSG00000031642.9, intron 2 of 11) 6927 ENSMUSG00000099419.1 ENSMUSG00000099419 ENSMUST00000188654 1700001D01Rik antisense Interval_154463 chr8 18381746 18382160 + 0 NA Intergenic Intergenic -47615 ENSMUSG00000110056.1 ENSMUSG00000110056 ENSMUST00000211704 1700014L14Rik lincRNA Interval_111463 chr4 21824374 21825027 + 0 NA exon (ENSMUSG00000040455.17, exon 13 of 17) protein_coding-exon (ENSMUSG00000040455.17, exon 13 of 17) -23348 ENSMUSG00000028248.15 ENSMUSG00000028248 ENSMUST00000133241 Pnisr protein_coding Interval_64116 chr16 8512907 8513754 + 0 NA promoter-TSS (ENSMUSG00000057880.12) protein_coding-promoter-TSS (ENSMUSG00000057880.12) -32589 ENSMUSG00000077557.1 ENSMUSG00000077557 ENSMUST00000104369 Gm23706 snoRNA Interval_104146 chr3 59068775 59069121 + 0 NA intron (ENSMUSG00000056476.13, intron 5 of 43) protein_coding-intron (ENSMUSG00000056476.13, intron 6 of 14) 32873 ENSMUSG00000050075.8 ENSMUSG00000050075 ENSMUST00000085040 Gpr171 protein_coding Interval_57066 chr15 5295850 5296557 + 0 NA Intergenic Intergenic 5843 ENSMUSG00000114998.1 ENSMUSG00000114998 ENSMUST00000228083 Gm2157 processed_pseudogene Interval_9444 chr1 157172209 157172535 + 0 NA intron (ENSMUSG00000070565.11, intron 9 of 17) protein_coding-intron (ENSMUSG00000070565.11, intron 9 of 17) 53424 ENSMUSG00000109913.1 ENSMUSG00000109913 ENSMUST00000209278 Gm30694 unitary_pseudogene Interval_51284 chr14 25738535 25739293 + 0 NA intron (ENSMUSG00000055538.7, intron 2 of 3) protein_coding-intron (ENSMUSG00000055538.7, intron 2 of 3) -19122 ENSMUSG00000055538.7 ENSMUSG00000055538 ENSMUST00000184642 Zcchc24 protein_coding Interval_26279 chr11 55629506 55629675 + 0 NA Intergenic Intergenic -21857 ENSMUSG00000000263.15 ENSMUSG00000000263 ENSMUST00000102716 Glra1 protein_coding Interval_18184 chr10 83375693 83376054 + 0 NA exon (ENSMUSG00000020255.8, exon 4 of 4) protein_coding-exon (ENSMUSG00000020255.8, exon 4 of 4) 15652 ENSMUSG00000020255.8 ENSMUSG00000020255 ENSMUST00000020488 D10Wsu102e protein_coding Interval_1223 chr1 17389312 17390619 + 0 NA Intergenic Intergenic -4993 ENSMUSG00000100398.1 ENSMUSG00000100398 ENSMUST00000188959 Gm5251 processed_pseudogene Interval_36805 chr12 54191144 54192506 + 0 NA intron (ENSMUSG00000035105.5, intron 1 of 4) protein_coding-intron (ENSMUSG00000035105.5, intron 1 of 4) 12035 ENSMUSG00000035105.5 ENSMUSG00000035105 ENSMUST00000039516 Egln3 protein_coding Interval_137221 chr6 70237062 70237490 + 0 NA Intergenic Intergenic 3696 ENSMUSG00000105432.1 ENSMUSG00000105432 ENSMUST00000196275 Gm43218 IG_V_gene Interval_103531 chr3 47460118 47460309 + 0 NA exon (ENSMUSG00000103798.1, exon 1 of 1) processed_pseudogene-exon (ENSMUSG00000103798.1, exon 1 of 1) 125 ENSMUSG00000103798.1 ENSMUSG00000103798 ENSMUST00000193328 Gm2229 processed_pseudogene Interval_8314 chr1 137218049 137219203 + 0 NA Intergenic Intergenic -2979 ENSMUSG00000077207.1 ENSMUSG00000077207 ENSMUST00000104019 Gm25609 snRNA Interval_5947 chr1 93424204 93425139 + 0 NA intron (ENSMUSG00000034088.15, intron 9 of 24) protein_coding-intron (ENSMUSG00000034088.15, intron 12 of 27) 2971 ENSMUSG00000090489.3 ENSMUSG00000090489 ENSMUST00000096427 Gm17415 processed_pseudogene Interval_163539 chr9 21977936 21979100 + 0 NA intron (ENSMUSG00000040146.9, intron 8 of 15) protein_coding-intron (ENSMUSG00000040146.9, intron 9 of 18) 10897 ENSMUSG00000040146.9 ENSMUSG00000040146 ENSMUST00000213130 Rgl3 protein_coding Interval_133914 chr6 15468803 15469774 + 0 NA Intergenic Intergenic 64307 ENSMUSG00000093317.1 ENSMUSG00000093317 ENSMUST00000175576 Gm25470 miRNA Interval_93310 chr2 71851992 71852961 + 0 NA exon (ENSMUSG00000027111.16, exon 2 of 2) protein_coding-exon (ENSMUSG00000027111.16, exon 2 of 2) -20870 ENSMUSG00000006494.11 ENSMUSG00000006494 ENSMUST00000129427 Pdk1 protein_coding Interval_78965 chr18 23181171 23182085 + 0 NA Intergenic Intergenic 34534 ENSMUSG00000077680.1 ENSMUSG00000077680 ENSMUST00000104492 Gm22495 snoRNA Interval_88322 chr2 3748596 3749675 + 0 NA intron (ENSMUSG00000026655.15, intron 2 of 4) protein_coding-intron (ENSMUSG00000026655.15, intron 1 of 3) 6042 ENSMUSG00000085205.1 ENSMUSG00000085205 ENSMUST00000131044 Gm13185 antisense Interval_135496 chr6 39652728 39654043 + 0 NA TTS (ENSMUSG00000091313.1) processed_pseudogene-TTS (ENSMUSG00000091313.1) 580 ENSMUSG00000091313.1 ENSMUSG00000091313 ENSMUST00000168364 Fth-ps2 processed_pseudogene Interval_122826 chr5 25829507 25829729 + 0 NA exon (ENSMUSG00000056367.14, exon 7 of 12) protein_coding-exon (ENSMUSG00000056367.14, exon 7 of 12) 69579 ENSMUSG00000056367.14 ENSMUSG00000056367 ENSMUST00000198693 Actr3b protein_coding Interval_27327 chr11 66393242 66393695 + 0 NA intron (ENSMUSG00000053930.13, intron 1 of 1) protein_coding-intron (ENSMUSG00000053930.13, intron 2 of 4) 109346 ENSMUSG00000053930.13 ENSMUSG00000053930 ENSMUST00000134562 Shisa6 protein_coding Interval_173878 chrX 106804523 106804822 + 0 NA Intergenic Intergenic -17268 ENSMUSG00000080841.1 ENSMUSG00000080841 ENSMUST00000117581 Gm14880 processed_pseudogene Interval_30156 chr11 89985550 89987098 + 0 NA intron (ENSMUSG00000020553.8, intron 4 of 5) protein_coding-intron (ENSMUSG00000020553.8, intron 4 of 5) 16570 ENSMUSG00000020553.8 ENSMUSG00000020553 ENSMUST00000020864 Pctp protein_coding Interval_133987 chr6 17362632 17362957 + 0 NA intron (ENSMUSG00000085264.1, intron 1 of 4) antisense-intron (ENSMUSG00000085264.1, intron 1 of 4) 15061 ENSMUSG00000100101.1 ENSMUSG00000100101 ENSMUST00000188215 Gm29591 lincRNA Interval_166070 chr9 56247533 56247786 + 0 NA intron (ENSMUSG00000074305.9, intron 4 of 6) protein_coding-intron (ENSMUSG00000074305.9, intron 4 of 6) -3594 ENSMUSG00000074305.9 ENSMUSG00000074305 ENSMUST00000185775 Peak1 protein_coding Interval_48243 chr13 97390326 97390890 + 0 NA Intergenic Intergenic 14374 ENSMUSG00000114425.1 ENSMUSG00000114425 ENSMUST00000223964 Gm33447 lincRNA Interval_161557 chr8 121187750 121188057 + 0 NA intron (ENSMUSG00000092329.1, intron 1 of 15) protein_coding-intron (ENSMUSG00000092329.1, intron 1 of 15) 15699 ENSMUSG00000097097.2 ENSMUSG00000097097 ENSMUST00000212635 5033426O07Rik lincRNA Interval_138137 chr6 85402625 85402853 + 0 NA Intergenic Intergenic -21329 ENSMUSG00000068302.8 ENSMUSG00000068302 ENSMUST00000174469 Noto protein_coding Interval_119834 chr4 140342571 140342829 + 0 NA Intergenic Intergenic -19398 ENSMUSG00000103107.1 ENSMUSG00000103107 ENSMUST00000192212 Gm9867 TEC Interval_49688 chr13 113996161 113996927 + 0 NA intron (ENSMUSG00000042348.10, intron 5 of 5) protein_coding-intron (ENSMUSG00000042348.10, intron 4 of 4) 123872 ENSMUSG00000114696.1 ENSMUSG00000114696 ENSMUST00000223997 Gm47479 TEC Interval_72148 chr17 28279932 28281626 + 0 NA intron (ENSMUSG00000002250.16, intron 1 of 5) protein_coding-intron (ENSMUSG00000002250.16, intron 2 of 7) -32798 ENSMUSG00000007570.16 ENSMUSG00000007570 ENSMUST00000156569 Fance protein_coding Interval_147310 chr7 65728553 65728847 + 0 NA Intergenic Intergenic 35224 ENSMUSG00000078681.10 ENSMUSG00000078681 ENSMUST00000206361 Tm2d3 protein_coding Interval_43104 chr13 24064609 24064792 + 0 NA exon (ENSMUSG00000021338.17, exon 30 of 38) protein_coding-exon (ENSMUSG00000021338.17, exon 30 of 38) -42144 ENSMUSG00000021338.17 ENSMUSG00000021338 ENSMUST00000136517 Carmil1 protein_coding Interval_64064 chr16 6976980 6977255 + 0 NA intron (ENSMUSG00000008658.16, intron 4 of 11) protein_coding-intron (ENSMUSG00000008658.16, intron 3 of 14) -216630 ENSMUSG00000008658.16 ENSMUSG00000008658 ENSMUST00000231031 Rbfox1 protein_coding Interval_54963 chr14 76526538 76529019 + 0 NA exon (ENSMUSG00000115092.1, exon 2 of 2) lincRNA-exon (ENSMUSG00000115092.1, exon 2 of 2) 1186 ENSMUSG00000115092.1 ENSMUSG00000115092 ENSMUST00000227784 E130202H07Rik lincRNA Interval_66322 chr16 33141726 33144136 + 0 NA Intergenic Intergenic -2683 ENSMUSG00000089109.1 ENSMUSG00000089109 ENSMUST00000158484 Gm23916 ribozyme Interval_75853 chr17 71844533 71845293 + 0 NA intron (ENSMUSG00000024059.10, intron 7 of 7) protein_coding-intron (ENSMUSG00000024059.10, intron 14 of 15) 16406 ENSMUSG00000024059.10 ENSMUSG00000024059 ENSMUST00000230290 Clip4 protein_coding Interval_151654 chr7 125715606 125717438 + 0 NA exon (ENSMUSG00000032743.15, exon 1 of 1) protein_coding-exon (ENSMUSG00000032743.15, exon 1 of 1) 8605 ENSMUSG00000032743.15 ENSMUSG00000032743 ENSMUST00000155059 D430042O09Rik protein_coding Interval_80750 chr18 46801548 46802047 + 0 NA Intergenic Intergenic 30472 ENSMUSG00000117372.1 ENSMUSG00000117372 ENSMUST00000234567 Gm49972 TEC Interval_62524 chr15 94268134 94269067 + 0 NA Intergenic Intergenic 135658 ENSMUSG00000022449.14 ENSMUSG00000022449 ENSMUST00000128797 Adamts20 protein_coding Interval_79259 chr18 28310358 28310839 + 0 NA TTS (ENSMUSG00000087940.1) snoRNA-TTS (ENSMUSG00000087940.1) 838 ENSMUSG00000087940.1 ENSMUSG00000087940 ENSMUST00000157315 Gm24246 snoRNA Interval_37388 chr12 66308619 66309072 + 0 NA Intergenic Intergenic -24444 ENSMUSG00000060499.7 ENSMUSG00000060499 ENSMUST00000081908 Rpl10l protein_coding Interval_169688 chr9 100392337 100392720 + 0 NA promoter-TSS (ENSMUSG00000111258.1) lincRNA-promoter-TSS (ENSMUSG00000111258.1) -677 ENSMUSG00000111258.1 ENSMUSG00000111258 ENSMUST00000213192 Gm34397 lincRNA Interval_97911 chr2 145613106 145614014 + 0 NA exon (ENSMUSG00000063873.10, exon 12 of 16) protein_coding-exon (ENSMUSG00000063873.10, exon 12 of 16) -58578 ENSMUSG00000074753.5 ENSMUSG00000074753 ENSMUST00000136794 Gm14092 antisense Interval_102970 chr3 33904934 33905609 + 0 NA Intergenic Intergenic -7687 ENSMUSG00000105475.1 ENSMUSG00000105475 ENSMUST00000197426 4930431L21Rik lincRNA Interval_44663 chr13 47001678 47001943 + 0 NA intron (ENSMUSG00000051606.5, intron 2 of 6) processed_transcript-intron (ENSMUSG00000051606.5, intron 2 of 2) -6514 ENSMUSG00000051606.5 ENSMUSG00000051606 ENSMUST00000060680 2010001K21Rik processed_transcript Interval_146604 chr7 47720145 47720427 + 0 NA promoter-TSS (ENSMUSG00000099603.1) unprocessed_pseudogene-promoter-TSS (ENSMUSG00000099603.1) -762 ENSMUSG00000099603.1 ENSMUSG00000099603 ENSMUST00000189876 Mrgprc3-ps unprocessed_pseudogene Interval_148399 chr7 81024053 81025116 + 0 NA TTS (ENSMUSG00000005621.11) protein_coding-TTS (ENSMUSG00000005621.11) 1164 ENSMUSG00000005621.11 ENSMUSG00000005621 ENSMUST00000125137 Zfp592 protein_coding Interval_339 chr1 4334898 4335177 + 0 NA intron (ENSMUSG00000025900.13, intron 3 of 29) protein_coding-intron (ENSMUSG00000025900.13, intron 3 of 29) 29792 ENSMUSG00000104123.1 ENSMUSG00000104123 ENSMUST00000194382 Gm37483 TEC Interval_110110 chr3 153381908 153382141 + 0 NA intron (ENSMUSG00000052544.9, intron 3 of 4) protein_coding-intron (ENSMUSG00000052544.9, intron 2 of 2) 68311 ENSMUSG00000099114.1 ENSMUSG00000099114 ENSMUST00000184201 Gm27405 miRNA Interval_121556 chr5 3419868 3420054 + 0 NA intron (ENSMUSG00000040274.11, intron 3 of 7) protein_coding-intron (ENSMUSG00000040274.11, intron 2 of 6) -50988 ENSMUSG00000040274.11 ENSMUSG00000040274 ENSMUST00000199396 Cdk6 protein_coding Interval_48452 chr13 99117789 99118579 + 0 NA Intergenic Intergenic 17423 ENSMUSG00000097848.2 ENSMUSG00000097848 ENSMUST00000224929 Gm807 lincRNA Interval_116692 chr4 116685021 116686181 + 0 NA promoter-TSS (ENSMUSG00000028691.12) protein_coding-promoter-TSS (ENSMUSG00000028691.12) 2 ENSMUSG00000028691.12 ENSMUSG00000028691 ENSMUST00000030454 Prdx1 protein_coding Interval_141608 chr6 131263115 131264415 + 0 NA Intergenic Intergenic 6778 ENSMUSG00000108284.1 ENSMUSG00000108284 ENSMUST00000204052 Gm44182 processed_pseudogene Interval_157443 chr8 70403969 70404388 + 0 NA TTS (ENSMUSG00000003575.13) protein_coding-TTS (ENSMUSG00000003575.13) 27107 ENSMUSG00000003575.13 ENSMUSG00000003575 ENSMUST00000153632 Crtc1 protein_coding Interval_160212 chr8 107162913 107165004 + 0 NA intron (ENSMUSG00000031924.4, intron 1 of 4) protein_coding-intron (ENSMUSG00000031924.4, intron 1 of 4) -1957 ENSMUSG00000031924.4 ENSMUSG00000031924 ENSMUST00000212920 Cyb5b protein_coding Interval_99763 chr2 164769253 164770473 + 0 NA promoter-TSS (ENSMUSG00000001403.13) protein_coding-promoter-TSS (ENSMUSG00000001403.13) -35 ENSMUSG00000001403.13 ENSMUSG00000001403 ENSMUST00000001439 Ube2c protein_coding Interval_68164 chr16 66117654 66117860 + 0 NA Intergenic Intergenic -137029 ENSMUSG00000095506.1 ENSMUSG00000095506 ENSMUST00000179254 Gm22448 snRNA Interval_79141 chr18 24923300 24923613 + 0 NA intron (ENSMUSG00000034295.10, intron 5 of 24) protein_coding-intron (ENSMUSG00000034295.10, intron 5 of 26) 162293 ENSMUSG00000088920.1 ENSMUSG00000088920 ENSMUST00000158295 Gm24294 misc_RNA Interval_112302 chr4 40218060 40219094 + 0 NA intron (ENSMUSG00000040296.15, intron 9 of 14) protein_coding-intron (ENSMUSG00000040296.15, intron 10 of 17) 21248 ENSMUSG00000040296.15 ENSMUSG00000040296 ENSMUST00000149539 Ddx58 protein_coding Interval_23127 chr11 20070900 20071205 + 0 NA intron (ENSMUSG00000020152.7, intron 8 of 8) protein_coding-intron (ENSMUSG00000020152.7, intron 8 of 8) 41857 ENSMUSG00000020152.7 ENSMUSG00000020152 ENSMUST00000134779 Actr2 protein_coding Interval_120231 chr4 144587148 144588722 + 0 NA exon (ENSMUSG00000070610.4, exon 1 of 1) processed_pseudogene-exon (ENSMUSG00000070610.4, exon 1 of 1) 691 ENSMUSG00000070610.4 ENSMUSG00000070610 ENSMUST00000118978 Gm13127 processed_pseudogene Interval_41759 chr12 118811361 118812054 + 0 NA Intergenic Intergenic -17875 ENSMUSG00000113169.1 ENSMUSG00000113169 ENSMUST00000220760 Gm6171 processed_pseudogene Interval_152458 chr7 133102422 133102624 + 0 NA intron (ENSMUSG00000030970.16, intron 1 of 6) protein_coding-intron (ENSMUSG00000030970.16, intron 1 of 10) 17748 ENSMUSG00000110282.1 ENSMUSG00000110282 ENSMUST00000209529 B930086L07Rik TEC Interval_8141 chr1 136017529 136019014 + 0 NA intron (ENSMUSG00000026411.17, intron 1 of 5) protein_coding-intron (ENSMUSG00000026411.17, intron 1 of 5) 10121 ENSMUSG00000026411.17 ENSMUSG00000026411 ENSMUST00000140545 Tmem9 protein_coding Interval_96176 chr2 120301081 120301837 + 0 NA intron (ENSMUSG00000046971.7, intron 13 of 14) protein_coding-intron (ENSMUSG00000046971.7, intron 18 of 19) 10918 ENSMUSG00000046971.7 ENSMUSG00000046971 ENSMUST00000054651 Pla2g4f protein_coding Interval_59414 chr15 52669402 52669613 + 0 NA Intergenic Intergenic -42901 ENSMUSG00000038622.8 ENSMUSG00000038622 ENSMUST00000037115 Med30 protein_coding Interval_144855 chr7 28629758 28631360 + 0 NA promoter-TSS (ENSMUSG00000037469.11) protein_coding-promoter-TSS (ENSMUSG00000037469.11) 508 ENSMUSG00000037469.11 ENSMUSG00000037469 ENSMUST00000162880 Acp7 protein_coding Interval_37915 chr12 73025658 73025974 + 0 NA Intergenic Intergenic 16999 ENSMUSG00000051367.8 ENSMUSG00000051367 ENSMUST00000175677 Six1 protein_coding Interval_91660 chr2 45939577 45940252 + 0 NA Intergenic Intergenic 130442 ENSMUSG00000083807.1 ENSMUSG00000083807 ENSMUST00000121515 Gm13466 processed_pseudogene Interval_164659 chr9 40381571 40382567 + 0 NA intron (ENSMUSG00000040111.17, intron 1 of 4) protein_coding-intron (ENSMUSG00000040111.17, intron 2 of 19) -15167 ENSMUSG00000110928.1 ENSMUSG00000110928 ENSMUST00000214407 Gm48114 TEC Interval_145981 chr7 42837511 42838902 + 0 NA intron (ENSMUSG00000092225.1, intron 1 of 3) protein_coding-intron (ENSMUSG00000092225.1, intron 1 of 3) 29028 ENSMUSG00000092225.1 ENSMUSG00000092225 ENSMUST00000174558 Gm2381 protein_coding Interval_121243 chr4 154334491 154337238 + 0 NA promoter-TSS (ENSMUSG00000039410.16) protein_coding-promoter-TSS (ENSMUSG00000039410.16) -263 ENSMUSG00000097871.1 ENSMUSG00000097871 ENSMUST00000181143 B230104I21Rik lincRNA Interval_139613 chr6 103068278 103068866 + 0 NA Intergenic Intergenic -99229 ENSMUSG00000107445.1 ENSMUSG00000107445 ENSMUST00000203610 Gm44449 processed_pseudogene Interval_145630 chr7 36432654 36433033 + 0 NA Intergenic Intergenic 2232 ENSMUSG00000093216.1 ENSMUSG00000093216 ENSMUST00000175475 Gm25247 miRNA Interval_75273 chr17 65612542 65614361 + 0 NA exon (ENSMUSG00000024091.9, exon 1 of 6) protein_coding-exon (ENSMUSG00000024091.9, exon 1 of 6) -18481 ENSMUSG00000024091.9 ENSMUSG00000024091 ENSMUST00000232686 Vapa protein_coding Interval_120689 chr4 150121614 150122203 + 0 NA intron (ENSMUSG00000028976.10, intron 3 of 13) protein_coding-intron (ENSMUSG00000028976.10, intron 3 of 13) -2645 ENSMUSG00000087094.1 ENSMUSG00000087094 ENSMUST00000126212 Gm13093 lincRNA Interval_140828 chr6 121956445 121956664 + 0 NA TTS (ENSMUSG00000108083.1) unprocessed_pseudogene-TTS (ENSMUSG00000108083.1) 40124 ENSMUSG00000108083.1 ENSMUSG00000108083 ENSMUST00000203118 Mug4-ps unprocessed_pseudogene Interval_78476 chr18 13389903 13390654 + 0 NA Intergenic Intergenic 18189 ENSMUSG00000117367.1 ENSMUSG00000117367 ENSMUST00000235001 Gm50093 processed_pseudogene Interval_144290 chr7 24325431 24326715 + 0 NA TTS (ENSMUSG00000118562.1) processed_pseudogene-TTS (ENSMUSG00000118562.1) 1720 ENSMUSG00000118562.1 ENSMUSG00000118562 ENSMUST00000238952 AC159140.1 processed_pseudogene Interval_153802 chr8 8723623 8724283 + 0 NA Intergenic Intergenic -2645 ENSMUSG00000109190.1 ENSMUSG00000109190 ENSMUST00000207643 Gm44621 lincRNA Interval_113334 chr4 53517613 53517890 + 0 NA intron (ENSMUSG00000028412.17, intron 3 of 3) protein_coding-intron (ENSMUSG00000028412.17, intron 4 of 15) 46946 ENSMUSG00000084970.1 ENSMUSG00000084970 ENSMUST00000138377 1700060J05Rik antisense Interval_50975 chr14 21445448 21445777 + 0 NA intron (ENSMUSG00000039197.10, intron 10 of 10) protein_coding-intron (ENSMUSG00000039197.10, intron 10 of 10) -4862 ENSMUSG00000088873.1 ENSMUSG00000088873 ENSMUST00000158248 Gm25864 snRNA Interval_7699 chr1 133129490 133131963 + 0 NA promoter-TSS (ENSMUSG00000046062.5) protein_coding-promoter-TSS (ENSMUSG00000046062.5) -618 ENSMUSG00000046062.5 ENSMUSG00000046062 ENSMUST00000122956 Ppp1r15b protein_coding Interval_152350 chr7 132210771 132211066 + 0 NA intron (ENSMUSG00000030849.18, intron 2 of 6) protein_coding-intron (ENSMUSG00000030849.18, intron 2 of 6) 56747 ENSMUSG00000086814.1 ENSMUSG00000086814 ENSMUST00000152302 Gm15677 antisense Interval_172664 chrX 41744217 41744782 + 0 NA Intergenic Intergenic -1536 ENSMUSG00000081918.4 ENSMUSG00000081918 ENSMUST00000122239 Gm14613 processed_pseudogene Interval_151683 chr7 125993907 125994173 + 0 NA intron (ENSMUSG00000046182.8, intron 2 of 6) protein_coding-intron (ENSMUSG00000046182.8, intron 2 of 6) 70407 ENSMUSG00000108376.1 ENSMUSG00000108376 ENSMUST00000206586 Gm44874 TEC Interval_100835 chr2 172802488 172803090 + 0 NA Intergenic Intergenic 61552 ENSMUSG00000093160.1 ENSMUSG00000093160 ENSMUST00000175419 Gm22773 miRNA Interval_95363 chr2 106955761 106956340 + 0 NA Intergenic Intergenic 13227 ENSMUSG00000027122.15 ENSMUSG00000027122 ENSMUST00000124598 Arl14ep protein_coding Interval_62680 chr15 96234481 96235378 + 0 NA intron (ENSMUSG00000097619.8, intron 2 of 2) lincRNA-intron (ENSMUSG00000097536.2, intron 1 of 6) 19058 ENSMUSG00000097619.8 ENSMUSG00000097619 ENSMUST00000229950 4833422M21Rik processed_transcript Interval_49637 chr13 113716315 113716586 + 0 NA Intergenic Intergenic 44132 ENSMUSG00000114417.1 ENSMUSG00000114417 ENSMUST00000223766 Gm34586 lincRNA Interval_40443 chr12 104915378 104917116 + 0 NA Intergenic Intergenic 10442 ENSMUSG00000100975.2 ENSMUSG00000100975 ENSMUST00000185486 Gm28875 lincRNA Interval_55488 chr14 88627913 88628127 + 0 NA Intergenic Intergenic -8013 ENSMUSG00000115623.1 ENSMUSG00000115623 ENSMUST00000227074 Gm41225 lincRNA Interval_55613 chr14 95819421 95820071 + 0 NA Intergenic Intergenic -61508 ENSMUSG00000034689.2 ENSMUSG00000034689 ENSMUST00000045892 Spertl protein_coding Interval_46414 chr13 64927934 64928500 + 0 NA exon (ENSMUSG00000113263.1, exon 1 of 1) processed_pseudogene-exon (ENSMUSG00000113263.1, exon 1 of 1) 944 ENSMUSG00000113263.1 ENSMUSG00000113263 ENSMUST00000220879 Gm4811 processed_pseudogene Interval_170347 chr9 107312721 107313360 + 0 NA Intergenic Intergenic -11202 ENSMUSG00000090570.1 ENSMUSG00000090570 ENSMUST00000163196 Gm17041 antisense Interval_3508 chr1 59162524 59163583 + 0 NA exon (ENSMUSG00000026024.14, exon 34 of 34) protein_coding-exon (ENSMUSG00000026024.14, exon 34 of 34) -4385 ENSMUSG00000079550.9 ENSMUSG00000079550 ENSMUST00000186790 Mpp4 protein_coding Interval_78688 chr18 17404922 17405174 + 0 NA Intergenic Intergenic -169595 ENSMUSG00000117460.1 ENSMUSG00000117460 ENSMUST00000234739 4921533I20Rik transcribed_processed_pseudogene Interval_9145 chr1 154034102 154034336 + 0 NA promoter-TSS (ENSMUSG00000100502.1) lincRNA-promoter-TSS (ENSMUSG00000100502.1) 82 ENSMUSG00000100502.1 ENSMUSG00000100502 ENSMUST00000188704 Gm28286 lincRNA Interval_34345 chr12 3527145 3528734 + 0 NA Intergenic Intergenic -4671 ENSMUSG00000112105.1 ENSMUSG00000112105 ENSMUST00000219719 Rps7-ps2 processed_pseudogene Interval_81029 chr18 53148519 53149138 + 0 NA Intergenic Intergenic -27561 ENSMUSG00000034484.8 ENSMUSG00000034484 ENSMUST00000236111 Snx2 protein_coding Interval_51082 chr14 22143761 22144495 + 0 NA intron (ENSMUSG00000063458.13, intron 2 of 3) protein_coding-intron (ENSMUSG00000063458.13, intron 2 of 6) -108025 ENSMUSG00000114205.1 ENSMUSG00000114205 ENSMUST00000225573 Gm7480 antisense Interval_150278 chr7 109219605 109220325 + 0 NA intron (ENSMUSG00000109001.1, intron 2 of 2) lincRNA-intron (ENSMUSG00000109001.1, intron 2 of 2) 4235 ENSMUSG00000109001.1 ENSMUSG00000109001 ENSMUST00000208274 Gm45024 lincRNA Interval_152111 chr7 129461117 129461465 + 0 NA Intergenic Intergenic -58201 ENSMUSG00000108713.1 ENSMUSG00000108713 ENSMUST00000206093 Gm33027 lincRNA Interval_63777 chr15 103358578 103359349 + 0 NA intron (ENSMUSG00000000555.8, intron 3 of 30) protein_coding-intron (ENSMUSG00000000555.8, intron 2 of 29) -7585 ENSMUSG00000000555.8 ENSMUSG00000000555 ENSMUST00000230460 Itga5 protein_coding Interval_32022 chr11 104524612 104525752 + 0 NA intron (ENSMUSG00000020687.13, intron 9 of 18) protein_coding-intron (ENSMUSG00000020687.13, intron 9 of 18) 25438 ENSMUSG00000020687.13 ENSMUSG00000020687 ENSMUST00000135303 Cdc27 protein_coding Interval_99900 chr2 165703289 165703488 + 0 NA intron (ENSMUSG00000017897.18, intron 6 of 7) protein_coding-intron (ENSMUSG00000017897.18, intron 5 of 15) -36531 ENSMUSG00000081758.1 ENSMUSG00000081758 ENSMUST00000118200 Gm11460 processed_pseudogene Interval_129491 chr5 120524786 120526198 + 0 NA intron (ENSMUSG00000032754.14, intron 9 of 14) protein_coding-intron (ENSMUSG00000032754.14, intron 10 of 15) 14222 ENSMUSG00000032754.14 ENSMUSG00000032754 ENSMUST00000123326 Slc8b1 protein_coding Interval_4445 chr1 74245483 74246168 + 0 NA intron (ENSMUSG00000006304.14, intron 2 of 10) protein_coding-intron (ENSMUSG00000006304.14, intron 1 of 9) 9741 ENSMUSG00000006304.14 ENSMUSG00000006304 ENSMUST00000113819 Arpc2 protein_coding Interval_24391 chr11 32902281 32902739 + 0 NA TTS (ENSMUSG00000085402.1) lincRNA-TTS (ENSMUSG00000085402.1) -7863 ENSMUSG00000081254.1 ENSMUSG00000081254 ENSMUST00000117772 Gm12112 processed_pseudogene Interval_119309 chr4 136779843 136780907 + 0 NA intron (ENSMUSG00000028664.14, intron 1 of 2) protein_coding-intron (ENSMUSG00000028664.14, intron 1 of 15) -86335 ENSMUSG00000028664.14 ENSMUSG00000028664 ENSMUST00000144573 Ephb2 protein_coding Interval_75722 chr17 70852606 70854286 + 0 NA promoter-TSS (ENSMUSG00000047407.17) protein_coding-promoter-TSS (ENSMUSG00000047407.17) -3632 ENSMUSG00000047407.17 ENSMUSG00000047407 ENSMUST00000125329 Tgif1 protein_coding Interval_65026 chr16 18557935 18558358 + 0 NA intron (ENSMUSG00000000884.17, intron 7 of 7) protein_coding-intron (ENSMUSG00000000884.17, intron 7 of 7) 30662 ENSMUSG00000009097.10 ENSMUSG00000009097 ENSMUST00000232589 Tbx1 protein_coding Interval_100038 chr2 166691579 166692752 + 0 NA intron (ENSMUSG00000039621.13, intron 1 of 2) protein_coding-intron (ENSMUSG00000039621.13, intron 1 of 39) 10091 ENSMUSG00000089145.1 ENSMUSG00000089145 ENSMUST00000158520 Gm25265 misc_RNA Interval_161991 chr8 124290558 124292040 + 0 NA intron (ENSMUSG00000089704.9, intron 1 of 4) protein_coding-intron (ENSMUSG00000089704.9, intron 1 of 15) -4067 ENSMUSG00000089704.9 ENSMUSG00000089704 ENSMUST00000147911 Galnt2 protein_coding Interval_68228 chr16 69901195 69901520 + 0 NA Intergenic Intergenic -40871 ENSMUSG00000063163.13 ENSMUSG00000063163 ENSMUST00000164146 Speer2 protein_coding Interval_22301 chr11 8615554 8616211 + 0 NA intron (ENSMUSG00000020422.14, intron 1 of 30) protein_coding-intron (ENSMUSG00000020422.14, intron 1 of 30) 48799 ENSMUSG00000020422.14 ENSMUSG00000020422 ENSMUST00000134823 Tns3 protein_coding Interval_169129 chr9 93083282 93083508 + 0 NA Intergenic Intergenic -77656 ENSMUSG00000100294.6 ENSMUSG00000100294 ENSMUST00000188921 1700034K08Rik lincRNA Interval_151867 chr7 127214685 127215716 + 0 NA promoter-TSS (ENSMUSG00000000486.13) protein_coding-promoter-TSS (ENSMUSG00000000486.13) 6301 ENSMUSG00000030672.12 ENSMUSG00000030672 ENSMUST00000139613 Mylpf protein_coding Interval_65502 chr16 22857323 22858333 + 0 NA promoter-TSS (ENSMUSG00000004460.17) protein_coding-promoter-TSS (ENSMUSG00000004460.17) -17 ENSMUSG00000004460.17 ENSMUSG00000004460 ENSMUST00000133013 Dnajb11 protein_coding Interval_8892 chr1 151861277 151861950 + 0 NA intron (ENSMUSG00000032666.16, intron 6 of 6) protein_coding-intron (ENSMUSG00000032666.16, intron 6 of 6) -6658 ENSMUSG00000084557.1 ENSMUSG00000084557 ENSMUST00000122608 Gm25279 snRNA Interval_126194 chr5 82054229 82054465 + 0 NA Intergenic Intergenic 67015 ENSMUSG00000106860.1 ENSMUSG00000106860 ENSMUST00000201220 1700008H02Rik TEC Interval_45226 chr13 53284714 53286668 + 0 NA promoter-TSS (ENSMUSG00000021464.14) protein_coding-promoter-TSS (ENSMUSG00000021464.14) -10033 ENSMUSG00000021464.14 ENSMUSG00000021464 ENSMUST00000149299 Ror2 protein_coding Interval_152856 chr7 138849847 138850834 + 0 NA intron (ENSMUSG00000041769.13, intron 3 of 4) protein_coding-intron (ENSMUSG00000041769.13, intron 2 of 8) -4067 ENSMUSG00000041775.7 ENSMUSG00000041775 ENSMUST00000118810 Mapk1ip1 protein_coding Interval_74035 chr17 46181644 46182601 + 0 NA intron (ENSMUSG00000023953.9, intron 7 of 9) protein_coding-intron (ENSMUSG00000023953.9, intron 8 of 10) 13367 ENSMUSG00000023953.9 ENSMUSG00000023953 ENSMUST00000233924 Polh protein_coding Interval_41278 chr12 112363361 112364339 + 0 NA Intergenic Intergenic -13783 ENSMUSG00000103080.1 ENSMUSG00000103080 ENSMUST00000194990 Gm38123 TEC Interval_45597 chr13 56158950 56160551 + 0 NA Intergenic Intergenic -7850 ENSMUSG00000077799.1 ENSMUSG00000077799 ENSMUST00000104611 Gm25148 snoRNA Interval_7872 chr1 134312167 134313002 + 0 NA promoter-TSS (ENSMUSG00000026458.13) protein_coding-promoter-TSS (ENSMUSG00000026458.13) -7776 ENSMUSG00000026458.13 ENSMUSG00000026458 ENSMUST00000186553 Ppfia4 protein_coding Interval_81856 chr18 65358334 65358814 + 0 NA intron (ENSMUSG00000118163.1, intron 2 of 2) protein_coding-intron (ENSMUSG00000032845.16, intron 3 of 12) 8490 ENSMUSG00000118163.1 ENSMUSG00000118163 ENSMUST00000237819 Gm41757 antisense Interval_23250 chr11 20903203 20903932 + 0 NA Intergenic Intergenic 34134 ENSMUSG00000096061.1 ENSMUSG00000096061 ENSMUST00000178821 Gm23681 miRNA Interval_63585 chr15 102210520 102212472 + 0 NA intron (ENSMUSG00000046897.17, intron 4 of 4) protein_coding-intron (ENSMUSG00000046897.17, intron 7 of 7) 6918 ENSMUSG00000046897.17 ENSMUSG00000046897 ENSMUST00000119830 Zfp740 protein_coding Interval_1867 chr1 34202627 34202931 + 0 NA intron (ENSMUSG00000026131.20, intron 30 of 83) protein_coding-intron (ENSMUSG00000026131.20, intron 45 of 97) -24333 ENSMUSG00000096992.3 ENSMUSG00000096992 ENSMUST00000187268 Gm26788 processed_transcript Interval_63096 chr15 99044234 99045258 + 0 NA Intergenic Intergenic -10428 ENSMUSG00000023484.14 ENSMUSG00000023484 ENSMUST00000229268 Prph protein_coding Interval_158019 chr8 78077109 78077425 + 0 NA Intergenic Intergenic -30693 ENSMUSG00000109948.1 ENSMUSG00000109948 ENSMUST00000210236 Gm45288 processed_pseudogene Interval_100808 chr2 172634063 172636346 + 0 NA Intergenic Intergenic 84213 ENSMUSG00000028640.11 ENSMUSG00000028640 ENSMUST00000142633 Tfap2c protein_coding Interval_119206 chr4 136198762 136199122 + 0 NA Intergenic Intergenic -7423 ENSMUSG00000036995.7 ENSMUSG00000036995 ENSMUST00000047526 Asap3 protein_coding Interval_70356 chr17 8930063 8931137 + 0 NA TTS (ENSMUSG00000023868.17) protein_coding-TTS (ENSMUSG00000023868.17) -57742 ENSMUSG00000023873.13 ENSMUSG00000023873 ENSMUST00000136954 1700010I14Rik protein_coding Interval_123977 chr5 36969797 36970439 + 0 NA intron (ENSMUSG00000039474.13, intron 5 of 5) protein_coding-intron (ENSMUSG00000039474.13, intron 7 of 7) 6838 ENSMUSG00000039474.13 ENSMUSG00000039474 ENSMUST00000167937 Wfs1 protein_coding Interval_6976 chr1 121483857 121484231 + 0 NA intron (ENSMUSG00000026339.18, intron 17 of 23) protein_coding-intron (ENSMUSG00000026339.18, intron 17 of 23) 9159 ENSMUSG00000085857.1 ENSMUSG00000085857 ENSMUST00000152863 Gm15392 antisense Interval_118968 chr4 134767078 134768886 + 0 NA promoter-TSS (ENSMUSG00000037295.7) protein_coding-promoter-TSS (ENSMUSG00000037295.7) -17875 ENSMUSG00000037295.7 ENSMUSG00000037295 ENSMUST00000140678 Ldlrap1 protein_coding Interval_140837 chr6 122227294 122228093 + 0 NA intron (ENSMUSG00000101397.6, intron 12 of 32) transcribed_unprocessed_pseudogene-intron (ENSMUSG00000101397.6, intron 12 of 32) 27556 ENSMUSG00000098864.1 ENSMUSG00000098864 ENSMUST00000184836 Gm27703 miRNA Interval_36262 chr12 40437753 40438356 + 0 NA intron (ENSMUSG00000055917.15, intron 1 of 12) protein_coding-intron (ENSMUSG00000055917.15, intron 1 of 11) -8029 ENSMUSG00000035954.10 ENSMUSG00000035954 ENSMUST00000220850 Dock4 protein_coding Interval_174500 chrX 153666578 153666827 + 0 NA Intergenic Intergenic 10096 ENSMUSG00000083488.1 ENSMUSG00000083488 ENSMUST00000118553 Gm8534 processed_pseudogene Interval_131163 chr5 135521459 135522482 + 0 NA intron (ENSMUSG00000039959.13, intron 1 of 1) protein_coding-intron (ENSMUSG00000039959.13, intron 1 of 30) 41599 ENSMUSG00000070464.1 ENSMUSG00000070464 ENSMUST00000094226 Ccl26 protein_coding Interval_67292 chr16 45608662 45609785 + 0 NA Intergenic Intergenic -1157 ENSMUSG00000022659.13 ENSMUSG00000022659 ENSMUST00000023339 Gcsam protein_coding Interval_169229 chr9 95664441 95664935 + 0 NA intron (ENSMUSG00000015354.8, intron 2 of 8) protein_coding-intron (ENSMUSG00000015354.8, intron 2 of 8) 11329 ENSMUSG00000100825.1 ENSMUSG00000100825 ENSMUST00000188629 Itpa-ps2 processed_pseudogene Interval_50646 chr14 17326382 17326681 + 0 NA Intergenic Intergenic 205028 ENSMUSG00000114769.1 ENSMUSG00000114769 ENSMUST00000224880 Gm48312 processed_pseudogene Interval_139188 chr6 97038886 97039271 + 0 NA intron (ENSMUSG00000046500.8, intron 1 of 5) protein_coding-intron (ENSMUSG00000046500.8, intron 1 of 5) 21315 ENSMUSG00000046500.8 ENSMUSG00000046500 ENSMUST00000203930 Tafa4 protein_coding Interval_64155 chr16 8756470 8758716 + 0 NA intron (ENSMUSG00000022710.17, intron 1 of 31) protein_coding-intron (ENSMUSG00000022710.17, intron 1 of 31) 8683 ENSMUSG00000084737.1 ENSMUSG00000084737 ENSMUST00000122788 Gm25805 snRNA Interval_80823 chr18 47578220 47578909 + 0 NA intron (ENSMUSG00000118259.1, intron 1 of 5) lincRNA-intron (ENSMUSG00000118259.1, intron 1 of 5) 40829 ENSMUSG00000118259.1 ENSMUSG00000118259 ENSMUST00000236621 Gm5095 lincRNA Interval_156289 chr8 46997258 46997512 + 0 NA intron (ENSMUSG00000109888.1, intron 3 of 3) protein_coding-intron (ENSMUSG00000038173.15, intron 1 of 7) 16792 ENSMUSG00000109888.1 ENSMUSG00000109888 ENSMUST00000210828 Gm45600 antisense Interval_148838 chr7 89208424 89209537 + 0 NA intron (ENSMUSG00000039428.11, intron 3 of 5) protein_coding-intron (ENSMUSG00000039428.11, intron 5 of 14) 8117 ENSMUSG00000109576.1 ENSMUSG00000109576 ENSMUST00000208963 Gm44704 TEC Interval_104382 chr3 64898807 64899729 + 0 NA exon (ENSMUSG00000093767.2, exon 1 of 1) unprocessed_pseudogene-exon (ENSMUSG00000093767.2, exon 1 of 1) 413 ENSMUSG00000093767.2 ENSMUSG00000093767 ENSMUST00000176920 Vmn2r-ps13 unprocessed_pseudogene Interval_141456 chr6 128386462 128387021 + 0 NA intron (ENSMUSG00000085739.1, intron 1 of 1) antisense-intron (ENSMUSG00000085739.1, intron 1 of 1) 9760 ENSMUSG00000108176.1 ENSMUSG00000108176 ENSMUST00000203779 Gm43965 TEC Interval_3943 chr1 64982103 64982651 + 0 NA Intergenic Intergenic 12227 ENSMUSG00000084416.3 ENSMUSG00000084416 ENSMUST00000120360 Rpl10a-ps1 processed_pseudogene Interval_159155 chr8 91150949 91152108 + 0 NA promoter-TSS (ENSMUSG00000110189.1) processed_pseudogene-promoter-TSS (ENSMUSG00000110189.1) -679 ENSMUSG00000110189.1 ENSMUSG00000110189 ENSMUST00000210399 Gm45665 processed_pseudogene Interval_60149 chr15 66475641 66476575 + 0 NA intron (ENSMUSG00000022375.6, intron 3 of 11) protein_coding-intron (ENSMUSG00000022375.6, intron 3 of 11) 24802 ENSMUSG00000022375.6 ENSMUSG00000022375 ENSMUST00000023006 Lrrc6 protein_coding Interval_87021 chr19 45578827 45579321 + 0 NA TTS (ENSMUSG00000041035.9) protein_coding-TTS (ENSMUSG00000041035.9) 3900 ENSMUSG00000041035.9 ENSMUSG00000041035 ENSMUST00000161373 Gm17018 protein_coding Interval_149475 chr7 98903995 98904269 + 0 NA promoter-TSS (ENSMUSG00000109130.1) antisense-promoter-TSS (ENSMUSG00000109130.1) -136 ENSMUSG00000109130.1 ENSMUSG00000109130 ENSMUST00000207697 Gm45187 antisense Interval_109561 chr3 144469566 144469812 + 0 NA intron (ENSMUSG00000040151.9, intron 1 of 6) protein_coding-intron (ENSMUSG00000040151.9, intron 1 of 6) 27483 ENSMUSG00000104903.1 ENSMUSG00000104903 ENSMUST00000196451 Gm43707 sense_intronic Interval_158926 chr8 88010250 88011488 + 0 NA Intergenic Intergenic -57007 ENSMUSG00000045333.15 ENSMUSG00000045333 ENSMUST00000173092 Zfp423 protein_coding Interval_141805 chr6 134619419 134620241 + 0 NA intron (ENSMUSG00000032718.4, intron 2 of 3) protein_coding-intron (ENSMUSG00000032718.4, intron 2 of 3) -5152 ENSMUSG00000108121.1 ENSMUSG00000108121 ENSMUST00000203765 Gm43952 TEC Interval_53214 chr14 55171517 55172351 + 0 NA intron (ENSMUSG00000115077.1, intron 1 of 3) unprocessed_pseudogene-intron (ENSMUSG00000115077.1, intron 1 of 3) 2225 ENSMUSG00000115077.1 ENSMUSG00000115077 ENSMUST00000228176 Gm46455 unprocessed_pseudogene Interval_41579 chr12 116475639 116476037 + 0 NA Intergenic Intergenic 1161 ENSMUSG00000084629.1 ENSMUSG00000084629 ENSMUST00000122680 Gm25112 snRNA Interval_95033 chr2 103346935 103348729 + 0 NA intron (ENSMUSG00000087278.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000087278.1, intron 1 of 2) 16906 ENSMUSG00000102686.1 ENSMUSG00000102686 ENSMUST00000195179 Gm37220 TEC Interval_136715 chr6 58470263 58470515 + 0 NA TTS (ENSMUSG00000115404.1) protein_coding-TTS (ENSMUSG00000115404.1) 4941 ENSMUSG00000115404.1 ENSMUSG00000115404 ENSMUST00000226390 Vmn1r31 protein_coding Interval_109123 chr3 135950600 135951014 + 0 NA intron (ENSMUSG00000104710.1, intron 1 of 3) antisense-intron (ENSMUSG00000104710.1, intron 1 of 3) 12951 ENSMUSG00000105937.1 ENSMUSG00000105937 ENSMUST00000196772 Gm43602 processed_pseudogene Interval_83590 chr18 90329462 90329928 + 0 NA Intergenic Intergenic -6815 ENSMUSG00000117726.1 ENSMUSG00000117726 ENSMUST00000237935 Gm7674 processed_pseudogene Interval_17056 chr10 70916215 70917169 + 0 NA intron (ENSMUSG00000047692.6, intron 3 of 5) antisense-intron (ENSMUSG00000047692.6, intron 3 of 6) 31797 ENSMUSG00000014329.14 ENSMUSG00000014329 ENSMUST00000144740 Bicc1 protein_coding Interval_73439 chr17 37263670 37264125 + 0 NA promoter-TSS (ENSMUSG00000063660.4) protein_coding-promoter-TSS (ENSMUSG00000063660.4) -148 ENSMUSG00000063660.4 ENSMUSG00000063660 ENSMUST00000080759 Olfr98 protein_coding Interval_137474 chr6 72666933 72667478 + 0 NA intron (ENSMUSG00000055799.13, intron 2 of 5) protein_coding-intron (ENSMUSG00000055799.13, intron 3 of 11) 4199 ENSMUSG00000055799.13 ENSMUSG00000055799 ENSMUST00000182651 Tcf7l1 protein_coding Interval_125452 chr5 67260137 67261582 + 0 NA promoter-TSS (ENSMUSG00000037720.16) protein_coding-promoter-TSS (ENSMUSG00000037720.16) 105 ENSMUSG00000037720.16 ENSMUSG00000037720 ENSMUST00000163028 Tmem33 protein_coding Interval_25540 chr11 49668871 49669110 + 0 NA Intergenic Intergenic 5380 ENSMUSG00000064057.12 ENSMUSG00000064057 ENSMUST00000076006 Scgb3a1 protein_coding Interval_144976 chr7 29214974 29215390 + 0 NA Intergenic Intergenic -1200 ENSMUSG00000049676.14 ENSMUSG00000049676 ENSMUST00000167064 Catsperg1 protein_coding Interval_5687 chr1 90914694 90915806 + 0 NA exon (ENSMUSG00000026303.6, exon 1 of 16) protein_coding-exon (ENSMUSG00000026303.6, exon 1 of 16) -23919 ENSMUSG00000026303.6 ENSMUSG00000026303 ENSMUST00000136220 Mlph protein_coding Interval_116558 chr4 115605825 115606229 + 0 NA intron (ENSMUSG00000063929.6, intron 2 of 5) protein_coding-intron (ENSMUSG00000063929.6, intron 3 of 11) 5058 ENSMUSG00000063929.6 ENSMUSG00000063929 ENSMUST00000084342 Cyp4a32 protein_coding Interval_41676 chr12 117653514 117654589 + 0 NA intron (ENSMUSG00000041992.9, intron 8 of 8) protein_coding-intron (ENSMUSG00000041992.9, intron 10 of 27) -34905 ENSMUSG00000041992.9 ENSMUSG00000041992 ENSMUST00000222035 Rapgef5 protein_coding Interval_45037 chr13 51667486 51668883 + 0 NA intron (ENSMUSG00000035139.14, intron 7 of 16) protein_coding-intron (ENSMUSG00000035139.14, intron 7 of 16) 16387 ENSMUSG00000035139.14 ENSMUSG00000035139 ENSMUST00000153877 Secisbp2 protein_coding Interval_108088 chr3 121443790 121444545 + 0 NA intron (ENSMUSG00000053931.11, intron 1 of 2) protein_coding-intron (ENSMUSG00000053931.11, intron 1 of 6) -12946 ENSMUSG00000053931.11 ENSMUSG00000053931 ENSMUST00000199499 Cnn3 protein_coding Interval_12878 chr10 7183034 7183328 + 0 NA intron (ENSMUSG00000015202.13, intron 1 of 12) protein_coding-intron (ENSMUSG00000015202.13, intron 1 of 12) -47675 ENSMUSG00000015202.13 ENSMUSG00000015202 ENSMUST00000015346 Cnksr3 protein_coding Interval_160131 chr8 106629282 106629578 + 0 NA intron (ENSMUSG00000000303.12, intron 2 of 16) protein_coding-intron (ENSMUSG00000000303.12, intron 2 of 15) 26051 ENSMUSG00000000303.12 ENSMUSG00000000303 ENSMUST00000136580 Cdh1 protein_coding Interval_6084 chr1 96543712 96543992 + 0 NA exon (ENSMUSG00000100336.1, exon 2 of 2) lincRNA-exon (ENSMUSG00000100336.1, exon 2 of 2) 12851 ENSMUSG00000100336.1 ENSMUSG00000100336 ENSMUST00000187961 Gm29601 lincRNA Interval_96972 chr2 130176750 130177184 + 0 NA exon (ENSMUSG00000027404.15, exon 2 of 2) protein_coding-exon (ENSMUSG00000027404.15, exon 2 of 2) 2367 ENSMUSG00000027404.15 ENSMUSG00000027404 ENSMUST00000150835 Snrpb protein_coding Interval_144954 chr7 29084224 29084881 + 0 NA promoter-TSS (ENSMUSG00000089219.1) miRNA-promoter-TSS (ENSMUSG00000089219.1) -858 ENSMUSG00000089219.1 ENSMUSG00000089219 ENSMUST00000158594 Mir1963 miRNA Interval_28241 chr11 74627630 74628661 + 0 NA intron (ENSMUSG00000069814.6, intron 1 of 3) protein_coding-intron (ENSMUSG00000069814.6, intron 1 of 3) 8540 ENSMUSG00000069814.6 ENSMUSG00000069814 ENSMUST00000100866 Ccdc92b protein_coding Interval_172851 chrX 52140779 52141702 + 0 NA intron (ENSMUSG00000031119.4, intron 1 of 8) protein_coding-intron (ENSMUSG00000031119.4, intron 1 of 8) 24012 ENSMUSG00000031119.4 ENSMUSG00000031119 ENSMUST00000033450 Gpc4 protein_coding Interval_148701 chr7 84272121 84272903 + 0 NA intron (ENSMUSG00000015709.9, intron 13 of 19) protein_coding-intron (ENSMUSG00000015709.9, intron 12 of 18) -39593 ENSMUSG00000109091.1 ENSMUSG00000109091 ENSMUST00000207963 Gm44827 lincRNA Interval_140941 chr6 122892582 122893704 + 0 NA Intergenic Intergenic 9673 ENSMUSG00000049249.2 ENSMUSG00000049249 ENSMUST00000050391 Gm5316 transcribed_processed_pseudogene Interval_22472 chr11 10735014 10735232 + 0 NA Intergenic Intergenic -358041 ENSMUSG00000084045.1 ENSMUSG00000084045 ENSMUST00000118697 Gm11997 processed_pseudogene Interval_17158 chr10 72967456 72968004 + 0 NA Intergenic Intergenic -17938 ENSMUSG00000112168.1 ENSMUSG00000112168 ENSMUST00000219415 Gm34776 lincRNA Interval_37809 chr12 72115784 72116872 + 0 NA intron (ENSMUSG00000021086.5, intron 14 of 20) protein_coding-intron (ENSMUSG00000021086.5, intron 14 of 20) 5467 ENSMUSG00000113976.1 ENSMUSG00000113976 ENSMUST00000220756 Gm18243 processed_pseudogene Interval_58163 chr15 30133556 30134043 + 0 NA Intergenic Intergenic -81243 ENSMUSG00000065726.1 ENSMUSG00000065726 ENSMUST00000083792 Gm26163 snoRNA Interval_74296 chr17 48625334 48626011 + 0 NA Intergenic Intergenic 7849 ENSMUSG00000077708.1 ENSMUSG00000077708 ENSMUST00000104520 Gm24071 snoRNA Interval_96700 chr2 127269631 127271037 + 0 NA promoter-TSS (ENSMUSG00000027367.16) protein_coding-promoter-TSS (ENSMUSG00000027367.16) -280 ENSMUSG00000103957.1 ENSMUSG00000103957 ENSMUST00000192976 Gm10766 TEC Interval_16627 chr10 66547383 66548259 + 0 NA Intergenic Intergenic 64268 ENSMUSG00000077439.1 ENSMUSG00000077439 ENSMUST00000104251 Gm22594 snoRNA Interval_152585 chr7 134844705 134845246 + 0 NA intron (ENSMUSG00000058325.6, intron 23 of 26) protein_coding-intron (ENSMUSG00000058325.6, intron 23 of 51) -55695 ENSMUSG00000110167.1 ENSMUSG00000110167 ENSMUST00000210342 Gm45532 TEC Interval_144059 chr7 19239227 19240678 + 0 NA intron (ENSMUSG00000052214.9, intron 1 of 1) protein_coding-intron (ENSMUSG00000052214.9, intron 1 of 1) -2178 ENSMUSG00000064580.1 ENSMUSG00000064580 ENSMUST00000082646 Gm25134 snRNA Interval_170773 chr9 110672512 110673389 + 0 NA intron (ENSMUSG00000104945.1, intron 2 of 2) protein_coding-intron (ENSMUSG00000019659.8, intron 1 of 6) 2004 ENSMUSG00000104945.1 ENSMUSG00000104945 ENSMUST00000197421 Gm35715 antisense Interval_73528 chr17 39183732 39184116 + 0 NA Intergenic Intergenic -4149 ENSMUSG00000117277.1 ENSMUSG00000117277 ENSMUST00000233616 Gm49828 unprocessed_pseudogene Interval_34585 chr12 5586881 5587129 + 0 NA Intergenic Intergenic 3619 ENSMUSG00000097977.1 ENSMUSG00000097977 ENSMUST00000182336 Gm5652 processed_pseudogene Interval_8676 chr1 147125529 147125725 + 0 NA Intergenic Intergenic 36590 ENSMUSG00000104269.1 ENSMUSG00000104269 ENSMUST00000193917 Gm37749 TEC Interval_164180 chr9 32227005 32227284 + 0 NA intron (ENSMUSG00000041444.14, intron 1 of 3) protein_coding-intron (ENSMUSG00000041444.14, intron 1 of 12) 2552 ENSMUSG00000041444.14 ENSMUSG00000041444 ENSMUST00000174730 Arhgap32 protein_coding Interval_168274 chr9 78367706 78370055 + 0 NA promoter-TSS (ENSMUSG00000060461.5) protein_coding-promoter-TSS (ENSMUSG00000060461.5) -703 ENSMUSG00000060461.5 ENSMUSG00000060461 ENSMUST00000071991 Dppa5a protein_coding Interval_109757 chr3 146648078 146648393 + 0 NA promoter-TSS (ENSMUSG00000090202.1) protein_coding-promoter-TSS (ENSMUSG00000090202.1) -374 ENSMUSG00000085810.7 ENSMUSG00000085810 ENSMUST00000154128 Gm16325 antisense Interval_120655 chr4 149936869 149938950 + 0 NA intron (ENSMUSG00000039911.13, intron 1 of 1) protein_coding-intron (ENSMUSG00000039911.13, intron 1 of 2) -15438 ENSMUSG00000039911.13 ENSMUSG00000039911 ENSMUST00000135896 Spsb1 protein_coding Interval_140078 chr6 113884618 113885324 + 0 NA intron (ENSMUSG00000030302.16, intron 3 of 3) protein_coding-intron (ENSMUSG00000030302.16, intron 1 of 19) 6568 ENSMUSG00000030302.16 ENSMUSG00000030302 ENSMUST00000154738 Atp2b2 protein_coding Interval_23110 chr11 19986565 19989686 + 0 NA intron (ENSMUSG00000045671.17, intron 1 of 5) protein_coding-intron (ENSMUSG00000045671.17, intron 1 of 5) 33555 ENSMUSG00000045671.17 ENSMUSG00000045671 ENSMUST00000123036 Spred2 protein_coding Interval_165925 chr9 54716596 54716781 + 0 NA TTS (ENSMUSG00000061559.15) protein_coding-TTS (ENSMUSG00000061559.15) 7669 ENSMUSG00000061559.15 ENSMUSG00000061559 ENSMUST00000127451 Wdr61 protein_coding Interval_48677 chr13 101089949 101090326 + 0 NA Intergenic Intergenic -50891 ENSMUSG00000096722.2 ENSMUSG00000096722 ENSMUST00000179479 Hmgb1-ps9 processed_pseudogene Interval_108077 chr3 121395907 121396132 + 0 NA Intergenic Intergenic -15340 ENSMUSG00000106455.1 ENSMUSG00000106455 ENSMUST00000197896 Gm5711 processed_pseudogene Interval_130341 chr5 126201553 126202267 + 0 NA Intergenic Intergenic -175437 ENSMUSG00000105189.1 ENSMUSG00000105189 ENSMUST00000200064 Gm7774 processed_pseudogene Interval_155676 chr8 36055231 36055890 + 0 NA Intergenic Intergenic 29807 ENSMUSG00000098181.1 ENSMUSG00000098181 ENSMUST00000182321 Rps12-ps24 processed_pseudogene Interval_56173 chr14 110598306 110598522 + 0 NA promoter-TSS (ENSMUSG00000095059.1) snRNA-promoter-TSS (ENSMUSG00000095059.1) -692 ENSMUSG00000095059.1 ENSMUSG00000095059 ENSMUST00000178423 Gm25670 snRNA Interval_18408 chr10 85584836 85585433 + 0 NA intron (ENSMUSG00000020042.15, intron 3 of 16) protein_coding-intron (ENSMUSG00000020042.15, intron 3 of 9) -60069 ENSMUSG00000020042.15 ENSMUSG00000020042 ENSMUST00000145433 Btbd11 protein_coding Interval_90382 chr2 30093357 30094396 + 0 NA promoter-TSS (ENSMUSG00000015335.16) protein_coding-promoter-TSS (ENSMUSG00000015335.16) -857 ENSMUSG00000015335.16 ENSMUSG00000015335 ENSMUST00000137001 Zdhhc12 protein_coding Interval_135283 chr6 38048863 38050010 + 0 NA intron (ENSMUSG00000038600.12, intron 2 of 3) protein_coding-intron (ENSMUSG00000038600.12, intron 20 of 20) -30825 ENSMUSG00000029830.15 ENSMUSG00000029830 ENSMUST00000040486 Svopl protein_coding Interval_163536 chr9 21955353 21956301 + 0 NA promoter-TSS (ENSMUSG00000051238.6) protein_coding-promoter-TSS (ENSMUSG00000051238.6) 72 ENSMUSG00000051238.6 ENSMUSG00000051238 ENSMUST00000053583 Swsap1 protein_coding Interval_168123 chr9 77376653 77377818 + 0 NA intron (ENSMUSG00000099170.1, intron 3 of 3) lincRNA-intron (ENSMUSG00000099170.1, intron 3 of 3) 19883 ENSMUSG00000103794.1 ENSMUSG00000103794 ENSMUST00000193999 4930590H14Rik TEC Interval_172467 chrX 20819212 20820518 + 0 NA intron (ENSMUSG00000001127.12, intron 1 of 16) protein_coding-intron (ENSMUSG00000001127.12, intron 1 of 16) 3949 ENSMUSG00000092838.1 ENSMUSG00000092838 ENSMUST00000175097 Gm24824 miRNA Interval_107717 chr3 111875865 111876510 + 0 NA Intergenic Intergenic -5716 ENSMUSG00000104543.1 ENSMUSG00000104543 ENSMUST00000198910 Gm6602 lincRNA Interval_142514 chr6 143004583 143005462 + 0 NA Intergenic Intergenic 15412 ENSMUSG00000107839.1 ENSMUSG00000107839 ENSMUST00000203259 4930434O05Rik lincRNA Interval_98308 chr2 150918803 150919658 + 0 NA intron (ENSMUSG00000027454.10, intron 4 of 4) protein_coding-intron (ENSMUSG00000027454.10, intron 4 of 6) 13830 ENSMUSG00000027454.10 ENSMUSG00000027454 ENSMUST00000123217 Gins1 protein_coding Interval_111370 chr4 19901260 19901581 + 0 NA intron (ENSMUSG00000028238.6, intron 2 of 2) protein_coding-intron (ENSMUSG00000028238.6, intron 2 of 7) 15520 ENSMUSG00000028238.6 ENSMUSG00000028238 ENSMUST00000128605 Atp6v0d2 protein_coding Interval_56942 chr14 123810762 123811325 + 0 NA intron (ENSMUSG00000032925.16, intron 2 of 10) protein_coding-intron (ENSMUSG00000032925.16, intron 2 of 10) -112455 ENSMUSG00000082793.2 ENSMUSG00000082793 ENSMUST00000119073 Gm9308 processed_pseudogene Interval_61462 chr15 81771273 81771899 + 0 NA intron (ENSMUSG00000022390.11, intron 4 of 5) protein_coding-intron (ENSMUSG00000022390.11, intron 4 of 22) -4193 ENSMUSG00000022390.11 ENSMUSG00000022390 ENSMUST00000230590 Zc3h7b protein_coding Interval_105388 chr3 85921114 85921471 + 0 NA Intergenic Intergenic 5509 ENSMUSG00000044330.8 ENSMUSG00000044330 ENSMUST00000054148 Gm9790 processed_pseudogene Interval_107285 chr3 105443535 105443866 + 0 NA intron (ENSMUSG00000074346.6, intron 1 of 1) antisense-intron (ENSMUSG00000074346.6, intron 1 of 1) 8027 ENSMUSG00000074346.6 ENSMUSG00000074346 ENSMUST00000130683 Kcnd3os antisense Interval_96011 chr2 119156293 119157483 + 0 NA promoter-TSS (ENSMUSG00000070730.11) protein_coding-promoter-TSS (ENSMUSG00000070730.11) -9452 ENSMUSG00000070730.11 ENSMUSG00000070730 ENSMUST00000139519 Rmdn3 protein_coding Interval_53343 chr14 56464928 56465624 + 0 NA intron (ENSMUSG00000000365.9, intron 3 of 13) protein_coding-intron (ENSMUSG00000000365.9, intron 14 of 36) -44007 ENSMUSG00000000365.9 ENSMUSG00000000365 ENSMUST00000225737 Rnf17 protein_coding Interval_159839 chr8 104234338 104235318 + 0 NA intron (ENSMUSG00000035824.7, intron 4 of 7) protein_coding-intron (ENSMUSG00000035824.7, intron 6 of 9) 11081 ENSMUSG00000110551.1 ENSMUSG00000110551 ENSMUST00000211966 Gm45750 processed_pseudogene Interval_959 chr1 13468006 13468772 + 0 NA Intergenic Intergenic -60734 ENSMUSG00000101171.1 ENSMUSG00000101171 ENSMUST00000187246 Gm7593 processed_pseudogene Interval_158571 chr8 84567213 84567913 + 0 NA intron (ENSMUSG00000034656.18, intron 22 of 48) protein_coding-intron (ENSMUSG00000034656.18, intron 20 of 46) 49621 ENSMUSG00000086067.1 ENSMUSG00000086067 ENSMUST00000127527 Gm16183 antisense Interval_129871 chr5 122832539 122833535 + 0 NA Intergenic Intergenic -11743 ENSMUSG00000029472.13 ENSMUSG00000029472 ENSMUST00000197331 Anapc5 protein_coding Interval_126086 chr5 77281330 77282360 + 0 NA exon (ENSMUSG00000029249.15, exon 4 of 4) protein_coding-exon (ENSMUSG00000029249.15, exon 4 of 4) 9088 ENSMUSG00000093061.1 ENSMUSG00000093061 ENSMUST00000175320 Mir5098 miRNA Interval_137950 chr6 83690226 83690551 + 0 NA Intergenic Intergenic -12103 ENSMUSG00000099263.1 ENSMUSG00000099263 ENSMUST00000184900 Gm27772 misc_RNA Interval_132589 chr5 146553670 146553869 + 0 NA Intergenic Intergenic -2367 ENSMUSG00000095557.7 ENSMUSG00000095557 ENSMUST00000110595 Gm3415 protein_coding Interval_31846 chr11 103325064 103325822 + 0 NA Intergenic Intergenic 7952 ENSMUSG00000034255.17 ENSMUSG00000034255 ENSMUST00000092557 Arhgap27 protein_coding Interval_114058 chr4 62793313 62794098 + 0 NA Intergenic Intergenic -18723 ENSMUSG00000077161.1 ENSMUSG00000077161 ENSMUST00000103973 Gm24117 snoRNA Interval_34902 chr12 13191831 13192066 + 0 NA Intergenic Intergenic -28185 ENSMUSG00000064717.1 ENSMUSG00000064717 ENSMUST00000082783 Gm24208 snoRNA Interval_163590 chr9 22379176 22379395 + 0 NA intron (ENSMUSG00000036777.8, intron 3 of 23) protein_coding-intron (ENSMUSG00000036777.8, intron 3 of 23) -7506 ENSMUSG00000111069.1 ENSMUSG00000111069 ENSMUST00000214468 Gm48646 sense_intronic Interval_19013 chr10 93802068 93802354 + 0 NA Intergenic Intergenic -5087 ENSMUSG00000096598.1 ENSMUSG00000096598 ENSMUST00000178842 Gm26239 snRNA Interval_39559 chr12 90602218 90602629 + 0 NA Intergenic Intergenic -13778 ENSMUSG00000114032.1 ENSMUSG00000114032 ENSMUST00000222569 Gm2139 processed_pseudogene Interval_107652 chr3 109479235 109479544 + 0 NA intron (ENSMUSG00000033721.16, intron 2 of 16) protein_coding-intron (ENSMUSG00000033721.16, intron 2 of 26) -168135 ENSMUSG00000033721.16 ENSMUSG00000033721 ENSMUST00000148866 Vav3 protein_coding Interval_145545 chr7 35505660 35506021 + 0 NA promoter-TSS (ENSMUSG00000030491.16) protein_coding-promoter-TSS (ENSMUSG00000030491.16) -832 ENSMUSG00000030491.16 ENSMUSG00000030491 ENSMUST00000127472 Tdrd12 protein_coding Interval_51341 chr14 26533865 26535617 + 0 NA exon (ENSMUSG00000021870.17, exon 1 of 23) protein_coding-exon (ENSMUSG00000021870.17, exon 1 of 23) 20187 ENSMUSG00000078128.1 ENSMUSG00000078128 ENSMUST00000104927 Gm2178 processed_pseudogene Interval_8513 chr1 140434812 140435309 + 0 NA intron (ENSMUSG00000052726.16, intron 12 of 27) protein_coding-intron (ENSMUSG00000052726.16, intron 12 of 26) 168573 ENSMUSG00000102698.1 ENSMUSG00000102698 ENSMUST00000195546 Gm37777 TEC Interval_152151 chr7 130190133 130190728 + 0 NA intron (ENSMUSG00000030849.18, intron 6 of 14) protein_coding-intron (ENSMUSG00000030849.18, intron 6 of 14) 75825 ENSMUSG00000030849.18 ENSMUSG00000030849 ENSMUST00000208844 Fgfr2 protein_coding Interval_25192 chr11 45044050 45044543 + 0 NA Intergenic Intergenic 72632 ENSMUSG00000084773.1 ENSMUSG00000084773 ENSMUST00000143869 Gm12159 lincRNA Interval_107306 chr3 105674196 105674888 + 0 NA TTS (ENSMUSG00000040896.16) protein_coding-TTS (ENSMUSG00000040896.16) 5537 ENSMUSG00000040896.16 ENSMUSG00000040896 ENSMUST00000147209 Kcnd3 protein_coding Interval_145439 chr7 34757602 34757912 + 0 NA intron (ENSMUSG00000060402.8, intron 1 of 2) protein_coding-intron (ENSMUSG00000060402.8, intron 1 of 3) -3945 ENSMUSG00000060402.8 ENSMUSG00000060402 ENSMUST00000205390 Chst8 protein_coding Interval_147940 chr7 75767730 75768842 + 0 NA TTS (ENSMUSG00000097415.2) lincRNA-TTS (ENSMUSG00000097415.2) 3760 ENSMUSG00000097415.2 ENSMUSG00000097415 ENSMUST00000181224 AU020206 lincRNA Interval_32986 chr11 113522737 113523204 + 0 NA TTS (ENSMUSG00000041654.15) protein_coding-TTS (ENSMUSG00000041654.15) 42809 ENSMUSG00000041654.15 ENSMUSG00000041654 ENSMUST00000123153 Slc39a11 protein_coding Interval_111751 chr4 27296512 27297408 + 0 NA Intergenic Intergenic -74556 ENSMUSG00000080958.1 ENSMUSG00000080958 ENSMUST00000118849 Gm11902 processed_pseudogene Interval_154950 chr8 25235559 25236252 + 0 NA intron (ENSMUSG00000065954.11, intron 1 of 4) protein_coding-intron (ENSMUSG00000065954.11, intron 1 of 2) -34456 ENSMUSG00000065954.11 ENSMUSG00000065954 ENSMUST00000211218 Tacc1 protein_coding Interval_53073 chr14 54238919 54239520 + 0 NA TTS (ENSMUSG00000022174.8) protein_coding-TTS (ENSMUSG00000022174.8) 14695 ENSMUSG00000022174.8 ENSMUSG00000022174 ENSMUST00000128231 Dad1 protein_coding Interval_50548 chr14 14947607 14948057 + 0 NA intron (ENSMUSG00000042567.20, intron 26 of 35) protein_coding-intron (ENSMUSG00000042567.20, intron 8 of 12) 94337 ENSMUSG00000114542.1 ENSMUSG00000114542 ENSMUST00000224124 Gm18142 processed_pseudogene Interval_74435 chr17 50470383 50471320 + 0 NA Intergenic Intergenic 131599 ENSMUSG00000117222.1 ENSMUSG00000117222 ENSMUST00000233175 Gm49906 lincRNA Interval_45766 chr13 57879258 57879774 + 0 NA intron (ENSMUSG00000056222.15, intron 2 of 10) protein_coding-intron (ENSMUSG00000056222.15, intron 1 of 9) 28816 ENSMUSG00000056222.15 ENSMUSG00000056222 ENSMUST00000185905 Spock1 protein_coding Interval_171140 chr9 114730312 114731775 + 0 NA promoter-TSS (ENSMUSG00000032434.9) protein_coding-promoter-TSS (ENSMUSG00000032434.9) -73 ENSMUSG00000032434.9 ENSMUSG00000032434 ENSMUST00000035007 Cmtm6 protein_coding Interval_20772 chr10 120882802 120882994 + 0 NA intron (ENSMUSG00000051236.13, intron 1 of 6) protein_coding-intron (ENSMUSG00000051236.13, intron 1 of 6) -16259 ENSMUSG00000086522.1 ENSMUSG00000086522 ENSMUST00000145987 Gm4473 bidirectional_promoter_lncRNA Interval_173702 chrX 102181879 102184328 + 0 NA Intergenic Intergenic 3634 ENSMUSG00000031320.9 ENSMUSG00000031320 ENSMUST00000152739 Rps4x protein_coding Interval_14143 chr10 28074208 28076579 + 0 NA exon (ENSMUSG00000019889.10, exon 1 of 1) protein_coding-exon (ENSMUSG00000019889.10, exon 1 of 1) -9203 ENSMUSG00000112432.1 ENSMUSG00000112432 ENSMUST00000218855 Gm18507 processed_pseudogene Interval_155650 chr8 35670505 35670854 + 0 NA intron (ENSMUSG00000070056.6, intron 2 of 2) protein_coding-intron (ENSMUSG00000070056.6, intron 2 of 2) 49270 ENSMUSG00000110335.1 ENSMUSG00000110335 ENSMUST00000209585 1700015I17Rik lincRNA Interval_21201 chr10 127183334 127184442 + 0 NA TTS (ENSMUSG00000019467.15) protein_coding-TTS (ENSMUSG00000019467.15) 6101 ENSMUSG00000019467.15 ENSMUSG00000019467 ENSMUST00000219245 Arhgef25 protein_coding Interval_147126 chr7 63600267 63602083 + 0 NA intron (ENSMUSG00000033510.14, intron 1 of 2) protein_coding-intron (ENSMUSG00000033510.14, intron 1 of 13) -4844 ENSMUSG00000093751.1 ENSMUSG00000093751 ENSMUST00000176164 Gm3307 processed_pseudogene Interval_108803 chr3 131594550 131595615 + 0 NA intron (ENSMUSG00000028032.13, intron 8 of 14) protein_coding-intron (ENSMUSG00000028032.13, intron 5 of 11) 18698 ENSMUSG00000105973.1 ENSMUSG00000105973 ENSMUST00000198636 Gm42881 TEC Interval_43917 chr13 38036473 38037851 + 0 NA promoter-TSS (ENSMUSG00000044566.15) protein_coding-promoter-TSS (ENSMUSG00000044566.15) -225 ENSMUSG00000044566.15 ENSMUSG00000044566 ENSMUST00000131066 Cage1 protein_coding Interval_26357 chr11 57192933 57193674 + 0 NA intron (ENSMUSG00000020524.16, intron 4 of 15) protein_coding-intron (ENSMUSG00000020524.16, intron 4 of 15) 16785 ENSMUSG00000020524.16 ENSMUSG00000020524 ENSMUST00000173531 Gria1 protein_coding Interval_131730 chr5 139543741 139544861 + 0 NA intron (ENSMUSG00000029546.12, intron 1 of 1) protein_coding-intron (ENSMUSG00000029546.12, intron 1 of 2) 403 ENSMUSG00000029546.12 ENSMUSG00000029546 ENSMUST00000174792 Uncx protein_coding Interval_74886 chr17 57070100 57071194 + 0 NA exon (ENSMUSG00000002668.8, exon 4 of 11) protein_coding-exon (ENSMUSG00000002668.8, exon 4 of 11) 1150 ENSMUSG00000002668.8 ENSMUSG00000002668 ENSMUST00000232938 Dennd1c protein_coding Interval_4645 chr1 75627496 75628210 + 0 NA Intergenic Intergenic 3199 ENSMUSG00000082528.1 ENSMUSG00000082528 ENSMUST00000120832 Gm15182 processed_pseudogene Interval_28833 chr11 78635943 78636114 + 0 NA intron (ENSMUSG00000017376.15, intron 1 of 2) protein_coding-intron (ENSMUSG00000017376.15, intron 1 of 10) -50473 ENSMUSG00000082110.1 ENSMUSG00000082110 ENSMUST00000119052 Gm11196 processed_pseudogene Interval_29993 chr11 88590282 88590772 + 0 NA promoter-TSS (ENSMUSG00000069769.13) protein_coding-promoter-TSS (ENSMUSG00000069769.13) -380 ENSMUSG00000069769.13 ENSMUSG00000069769 ENSMUST00000126293 Msi2 protein_coding Interval_59213 chr15 48789710 48790720 + 0 NA intron (ENSMUSG00000022311.15, intron 1 of 70) protein_coding-intron (ENSMUSG00000022311.15, intron 1 of 70) 1848 ENSMUSG00000022311.15 ENSMUSG00000022311 ENSMUST00000160655 Csmd3 protein_coding Interval_162789 chr9 9127027 9127740 + 0 NA intron (ENSMUSG00000050730.17, intron 3 of 5) protein_coding-intron (ENSMUSG00000050730.17, intron 3 of 22) -108905 ENSMUSG00000085253.3 ENSMUSG00000085253 ENSMUST00000150263 Gm16833 antisense Interval_94151 chr2 84707154 84708272 + 0 NA intron (ENSMUSG00000034075.10, intron 2 of 11) protein_coding-intron (ENSMUSG00000034075.10, intron 2 of 11) 4451 ENSMUSG00000099206.1 ENSMUSG00000099206 ENSMUST00000184669 Gm27942 snRNA Interval_90241 chr2 29237550 29238282 + 0 NA intron (ENSMUSG00000035513.19, intron 1 of 2) protein_coding-intron (ENSMUSG00000035513.19, intron 1 of 8) 10209 ENSMUSG00000035513.19 ENSMUSG00000035513 ENSMUST00000149096 Ntng2 protein_coding Interval_39207 chr12 85848224 85848790 + 0 NA intron (ENSMUSG00000012609.19, intron 5 of 6) protein_coding-intron (ENSMUSG00000012609.19, intron 5 of 33) -26257 ENSMUSG00000021252.11 ENSMUSG00000021252 ENSMUST00000142331 Erg28 protein_coding Interval_3513 chr1 59220443 59220908 + 0 NA intron (ENSMUSG00000026024.14, intron 1 of 2) protein_coding-intron (ENSMUSG00000026024.14, intron 1 of 33) -1549 ENSMUSG00000026024.14 ENSMUSG00000026024 ENSMUST00000188469 Als2 protein_coding Interval_71662 chr17 25215599 25215789 + 0 NA intron (ENSMUSG00000015127.14, intron 9 of 14) protein_coding-intron (ENSMUSG00000015127.14, intron 9 of 14) 5009 ENSMUSG00000015127.14 ENSMUSG00000015127 ENSMUST00000161679 Unkl protein_coding Interval_167896 chr9 73774949 73775168 + 0 NA intron (ENSMUSG00000062151.13, intron 4 of 32) protein_coding-intron (ENSMUSG00000062151.13, intron 3 of 31) 20199 ENSMUSG00000084426.1 ENSMUSG00000084426 ENSMUST00000122477 Gm25105 snoRNA Interval_94999 chr2 102874112 102874386 + 0 NA intron (ENSMUSG00000005087.17, intron 1 of 4) protein_coding-intron (ENSMUSG00000005087.17, intron 1 of 18) -23711 ENSMUSG00000065683.1 ENSMUSG00000065683 ENSMUST00000083749 Gm23731 snRNA Interval_65632 chr16 24428790 24429280 + 0 NA intron (ENSMUSG00000033306.15, intron 1 of 7) protein_coding-intron (ENSMUSG00000033306.15, intron 1 of 12) -22618 ENSMUSG00000087861.1 ENSMUSG00000087861 ENSMUST00000157236 Gm24440 snRNA Interval_52340 chr14 45265191 45265519 + 0 NA promoter-TSS (ENSMUSG00000049092.11) protein_coding-promoter-TSS (ENSMUSG00000049092.11) -7895 ENSMUSG00000115373.1 ENSMUSG00000115373 ENSMUST00000227166 Gm49194 sense_intronic Interval_53877 chr14 63055389 63056662 + 0 NA intron (ENSMUSG00000054763.9, intron 3 of 3) protein_coding-intron (ENSMUSG00000054763.9, intron 2 of 2) -6070 ENSMUSG00000075571.8 ENSMUSG00000075571 ENSMUST00000100490 Defb30 protein_coding Interval_26685 chr11 59707785 59708615 + 0 NA intron (ENSMUSG00000005417.17, intron 3 of 3) protein_coding-intron (ENSMUSG00000005417.17, intron 3 of 22) 31954 ENSMUSG00000086330.7 ENSMUSG00000086330 ENSMUST00000153431 1700007J10Rik processed_transcript Interval_107843 chr3 116105088 116105471 + 0 NA Intergenic Intergenic 15436 ENSMUSG00000027962.14 ENSMUSG00000027962 ENSMUST00000196309 Vcam1 protein_coding Interval_109634 chr3 145601886 145602951 + 0 NA intron (ENSMUSG00000074182.8, intron 10 of 10) protein_coding-intron (ENSMUSG00000074182.8, intron 9 of 9) 26171 ENSMUSG00000074182.8 ENSMUSG00000074182 ENSMUST00000197474 Znhit6 protein_coding Interval_22653 chr11 12531983 12532893 + 0 NA Intergenic Intergenic -120294 ENSMUSG00000020173.17 ENSMUSG00000020173 ENSMUST00000146067 Cobl protein_coding Interval_83510 chr18 88587924 88588864 + 0 NA Intergenic Intergenic -21008 ENSMUSG00000118352.1 ENSMUSG00000118352 ENSMUST00000237266 Gm50401 lincRNA Interval_67296 chr16 45690401 45690867 + 0 NA intron (ENSMUSG00000033177.13, intron 2 of 17) protein_coding-intron (ENSMUSG00000033177.13, intron 2 of 17) -4134 ENSMUSG00000033177.13 ENSMUSG00000033177 ENSMUST00000178323 Tmprss7 protein_coding Interval_160494 chr8 109987808 109988042 + 0 NA Intergenic Intergenic -2581 ENSMUSG00000001670.13 ENSMUSG00000001670 ENSMUST00000143741 Tat protein_coding Interval_123361 chr5 31745700 31745896 + 0 NA intron (ENSMUSG00000052139.18, intron 3 of 11) protein_coding-intron (ENSMUSG00000052139.18, intron 5 of 13) 37402 ENSMUSG00000107151.1 ENSMUSG00000107151 ENSMUST00000201018 Gm43810 TEC Interval_55635 chr14 97050823 97051048 + 0 NA intron (ENSMUSG00000115229.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000115229.1, intron 1 of 2) -1350 ENSMUSG00000098772.1 ENSMUSG00000098772 ENSMUST00000185000 Gm27441 miRNA Interval_45439 chr13 55171734 55172462 + 0 NA Intergenic Intergenic 16415 ENSMUSG00000005320.9 ENSMUSG00000005320 ENSMUST00000162167 Fgfr4 protein_coding Interval_94073 chr2 83661698 83662096 + 0 NA TTS (ENSMUSG00000027091.14) protein_coding-TTS (ENSMUSG00000027091.14) 5277 ENSMUSG00000027091.14 ENSMUSG00000027091 ENSMUST00000134789 Zc3h15 protein_coding Interval_102985 chr3 34025275 34025549 + 0 NA intron (ENSMUSG00000027680.15, intron 1 of 14) protein_coding-intron (ENSMUSG00000027680.15, intron 1 of 16) -5530 ENSMUSG00000105535.1 ENSMUSG00000105535 ENSMUST00000200602 Gm43077 lincRNA Interval_93246 chr2 71432440 71433089 + 0 NA intron (ENSMUSG00000027018.11, intron 8 of 10) protein_coding-intron (ENSMUSG00000027018.11, intron 8 of 10) 12672 ENSMUSG00000027018.11 ENSMUSG00000027018 ENSMUST00000145147 Hat1 protein_coding Interval_149581 chr7 99825303 99826324 + 0 NA intron (ENSMUSG00000035239.6, intron 1 of 2) protein_coding-intron (ENSMUSG00000035239.6, intron 1 of 2) 2604 ENSMUSG00000035239.6 ENSMUSG00000035239 ENSMUST00000036331 Neu3 protein_coding Interval_102965 chr3 33824141 33825213 + 0 NA TTS (ENSMUSG00000027676.11) protein_coding-TTS (ENSMUSG00000027676.11) 1863 ENSMUSG00000027676.11 ENSMUSG00000027676 ENSMUST00000197230 Ccdc39 protein_coding Interval_158474 chr8 83928767 83929298 + 0 NA TTS (ENSMUSG00000105569.1) miRNA-TTS (ENSMUSG00000105569.1) 524 ENSMUSG00000105569.1 ENSMUSG00000105569 ENSMUST00000199528 Gm44450 miRNA Interval_130996 chr5 134466349 134467495 + 0 NA Intergenic Intergenic 3682 ENSMUSG00000072576.5 ENSMUSG00000072576 ENSMUST00000084281 Gm16020 processed_pseudogene Interval_168051 chr9 75632682 75633527 + 0 NA intron (ENSMUSG00000032184.5, intron 1 of 2) protein_coding-intron (ENSMUSG00000032184.5, intron 1 of 2) 7345 ENSMUSG00000032184.5 ENSMUSG00000032184 ENSMUST00000213292 Lysmd2 protein_coding Interval_114615 chr4 83233120 83233594 + 0 NA promoter-TSS (ENSMUSG00000038172.14) protein_coding-promoter-TSS (ENSMUSG00000038172.14) 39369 ENSMUSG00000083245.1 ENSMUSG00000083245 ENSMUST00000117732 Gm11185 processed_pseudogene Interval_8339 chr1 137473344 137473962 + 0 NA Intergenic Intergenic 57577 ENSMUSG00000103070.1 ENSMUSG00000103070 ENSMUST00000192122 Gm37903 TEC Interval_139239 chr6 97442543 97442943 + 0 NA intron (ENSMUSG00000030064.16, intron 2 of 7) protein_coding-intron (ENSMUSG00000030064.16, intron 1 of 22) -7007 ENSMUSG00000108185.1 ENSMUSG00000108185 ENSMUST00000204326 Gm19653 processed_pseudogene Interval_152115 chr7 129506665 129507680 + 0 NA Intergenic Intergenic -100635 ENSMUSG00000042055.13 ENSMUSG00000042055 ENSMUST00000136560 Wdr11 protein_coding Interval_153935 chr8 11317484 11317724 + 0 NA intron (ENSMUSG00000031503.13, intron 3 of 47) protein_coding-intron (ENSMUSG00000031503.13, intron 3 of 47) -4915 ENSMUSG00000031502.11 ENSMUSG00000031502 ENSMUST00000209000 Col4a1 protein_coding Interval_10473 chr1 171195267 171196488 + 0 NA intron (ENSMUSG00000038370.6, intron 1 of 2) protein_coding-intron (ENSMUSG00000038370.6, intron 1 of 2) 391 ENSMUSG00000038370.6 ENSMUSG00000038370 ENSMUST00000111332 Pcp4l1 protein_coding Interval_146989 chr7 57311328 57311544 + 0 NA intron (ENSMUSG00000055026.13, intron 3 of 3) protein_coding-intron (ENSMUSG00000055026.13, intron 3 of 3) 75752 ENSMUSG00000055026.13 ENSMUSG00000055026 ENSMUST00000171965 Gabrg3 protein_coding Interval_148190 chr7 79715222 79716155 + 0 NA promoter-TSS (ENSMUSG00000050382.14) protein_coding-promoter-TSS (ENSMUSG00000050382.14) -19 ENSMUSG00000050382.14 ENSMUSG00000050382 ENSMUST00000184137 Kif7 protein_coding Interval_33163 chr11 114850774 114853664 + 0 NA promoter-TSS (ENSMUSG00000051043.16) protein_coding-intron (ENSMUSG00000051043.16, intron 1 of 3) 679 ENSMUSG00000051043.16 ENSMUSG00000051043 ENSMUST00000152314 Gprc5c protein_coding Interval_54878 chr14 75960147 75960541 + 0 NA intron (ENSMUSG00000046523.5, intron 1 of 1) protein_coding-intron (ENSMUSG00000046523.5, intron 1 of 1) 5335 ENSMUSG00000046523.5 ENSMUSG00000046523 ENSMUST00000050120 Kctd4 protein_coding Interval_57065 chr15 5266050 5267459 + 0 NA Intergenic Intergenic -14192 ENSMUSG00000115748.1 ENSMUSG00000115748 ENSMUST00000226566 Gm49093 processed_pseudogene Interval_56887 chr14 122857735 122857926 + 0 NA intron (ENSMUSG00000041625.15, intron 3 of 3) protein_coding-intron (ENSMUSG00000041650.15, intron 21 of 23) -55245 ENSMUSG00000075463.3 ENSMUSG00000075463 ENSMUST00000162218 4930594M22Rik processed_transcript Interval_123369 chr5 31915915 31916264 + 0 NA intron (ENSMUSG00000052139.18, intron 5 of 6) protein_coding-intron (ENSMUSG00000052139.18, intron 9 of 13) -10608 ENSMUSG00000107140.1 ENSMUSG00000107140 ENSMUST00000202862 Gm43811 TEC Interval_34501 chr12 4697335 4697883 + 0 NA intron (ENSMUSG00000020640.10, intron 3 of 5) protein_coding-intron (ENSMUSG00000020640.10, intron 29 of 38) -7683 ENSMUSG00000091732.1 ENSMUSG00000091732 ENSMUST00000080062 Gm17541 processed_pseudogene Interval_52919 chr14 52058350 52059020 + 0 NA Intergenic Intergenic -10615 ENSMUSG00000065853.1 ENSMUSG00000065853 ENSMUST00000083919 Gm22354 snoRNA Interval_160003 chr8 105685515 105688276 + 0 NA intron (ENSMUSG00000050357.9, intron 3 of 38) protein_coding-intron (ENSMUSG00000050357.9, intron 3 of 38) 621 ENSMUSG00000050357.9 ENSMUSG00000050357 ENSMUST00000212643 Carmil2 protein_coding Interval_74124 chr17 46645397 46646674 + 0 NA promoter-TSS (ENSMUSG00000002767.13) protein_coding-promoter-TSS (ENSMUSG00000002767.13) -13 ENSMUSG00000003546.10 ENSMUSG00000003546 ENSMUST00000003642 Klc4 protein_coding Interval_163173 chr9 16772955 16773537 + 0 NA Intergenic Intergenic -256799 ENSMUSG00000090602.3 ENSMUSG00000090602 ENSMUST00000164523 Gm5611 processed_pseudogene Interval_129384 chr5 119651272 119651796 + 0 NA intron (ENSMUSG00000085345.1, intron 1 of 1) antisense-intron (ENSMUSG00000087516.7, intron 1 of 2) 5400 ENSMUSG00000085345.1 ENSMUSG00000085345 ENSMUST00000154997 Gm16064 lincRNA Interval_29661 chr11 85884400 85885043 + 0 NA Intergenic Intergenic -1701 ENSMUSG00000000094.12 ENSMUSG00000000094 ENSMUST00000108045 Tbx4 protein_coding Interval_107927 chr3 116904039 116904404 + 0 NA TTS (ENSMUSG00000033386.10) protein_coding-TTS (ENSMUSG00000033386.10) 40109 ENSMUSG00000106073.1 ENSMUSG00000106073 ENSMUST00000196227 Gm42892 TEC Interval_83711 chr19 3890041 3890397 + 0 NA TTS (ENSMUSG00000024843.15) protein_coding-TTS (ENSMUSG00000024843.15) 16021 ENSMUSG00000001750.16 ENSMUSG00000001750 ENSMUST00000236590 Tcirg1 protein_coding Interval_93141 chr2 70558250 70559764 + 0 NA intron (ENSMUSG00000070880.10, intron 1 of 3) protein_coding-intron (ENSMUSG00000070880.10, intron 1 of 3) -3156 ENSMUSG00000070880.10 ENSMUSG00000070880 ENSMUST00000140478 Gad1 protein_coding Interval_34529 chr12 4910339 4910764 + 0 NA Intergenic Intergenic -3287 ENSMUSG00000020634.12 ENSMUSG00000020634 ENSMUST00000141360 Ubxn2a protein_coding Interval_2800 chr1 45563118 45563934 + 0 NA Intergenic Intergenic -38500 ENSMUSG00000100894.1 ENSMUSG00000100894 ENSMUST00000185744 Gm8304 processed_pseudogene Interval_161744 chr8 122497074 122498537 + 0 NA intron (ENSMUSG00000014444.17, intron 16 of 50) protein_coding-intron (ENSMUSG00000014444.17, intron 16 of 50) 16460 ENSMUSG00000049482.16 ENSMUSG00000049482 ENSMUST00000212499 Ctu2 protein_coding Interval_38448 chr12 79094857 79095549 + 0 NA intron (ENSMUSG00000112489.1, intron 3 of 3) lincRNA-intron (ENSMUSG00000112489.1, intron 4 of 4) -5558 ENSMUSG00000021120.11 ENSMUSG00000021120 ENSMUST00000217979 Pigh protein_coding Interval_87550 chr19 53389963 53391152 + 0 NA promoter-TSS (ENSMUSG00000025024.7) protein_coding-promoter-TSS (ENSMUSG00000025024.7) -232 ENSMUSG00000117768.1 ENSMUSG00000117768 ENSMUST00000238029 8030456M14Rik bidirectional_promoter_lncRNA Interval_101263 chr2 179951684 179951894 + 0 NA intron (ENSMUSG00000039117.16, intron 1 of 14) protein_coding-intron (ENSMUSG00000039117.16, intron 1 of 14) -24204 ENSMUSG00000085704.1 ENSMUSG00000085704 ENSMUST00000150145 4921531C22Rik processed_transcript Interval_96591 chr2 125988215 125988487 + 0 NA intron (ENSMUSG00000027209.17, intron 13 of 15) protein_coding-intron (ENSMUSG00000027209.17, intron 14 of 16) -46307 ENSMUSG00000027208.14 ENSMUSG00000027208 ENSMUST00000110442 Fgf7 protein_coding Interval_33988 chr11 119863417 119863793 + 0 NA intron (ENSMUSG00000025583.15, intron 19 of 32) protein_coding-intron (ENSMUSG00000025583.15, intron 20 of 33) 7296 ENSMUSG00000025583.15 ENSMUSG00000025583 ENSMUST00000131217 Rptor protein_coding Interval_137582 chr6 73644392 73645158 + 0 NA Intergenic Intergenic -36102 ENSMUSG00000107441.1 ENSMUSG00000107441 ENSMUST00000204638 Gm31747 lincRNA Interval_141552 chr6 129194943 129195185 + 0 NA Intergenic Intergenic -5940 ENSMUSG00000098268.1 ENSMUSG00000098268 ENSMUST00000183692 Gm27514 miRNA Interval_43897 chr13 37929465 37931915 + 0 NA exon (ENSMUSG00000039087.17, exon 9 of 12) protein_coding-exon (ENSMUSG00000039087.17, exon 9 of 12) -16326 ENSMUSG00000039087.17 ENSMUSG00000039087 ENSMUST00000162849 Rreb1 protein_coding Interval_1135 chr1 15996494 15997199 + 0 NA Intergenic Intergenic -56489 ENSMUSG00000100652.1 ENSMUSG00000100652 ENSMUST00000185778 Gm7634 processed_pseudogene Interval_31552 chr11 101325205 101325710 + 0 NA exon (ENSMUSG00000078651.8, exon 1 of 4) protein_coding-exon (ENSMUSG00000078651.8, exon 1 of 4) 370 ENSMUSG00000078651.8 ENSMUSG00000078651 ENSMUST00000107264 Aoc2 protein_coding Interval_55571 chr14 92882664 92882851 + 0 NA Intergenic Intergenic 9945 ENSMUSG00000115444.1 ENSMUSG00000115444 ENSMUST00000226166 Gm48963 processed_pseudogene Interval_126976 chr5 98901931 98902308 + 0 NA Intergenic Intergenic 41713 ENSMUSG00000029334.14 ENSMUSG00000029334 ENSMUST00000160765 Prkg2 protein_coding Interval_47501 chr13 85791091 85791384 + 0 NA Intergenic Intergenic 74096 ENSMUSG00000114447.1 ENSMUSG00000114447 ENSMUST00000224158 Gm47636 processed_pseudogene Interval_55792 chr14 100209644 100210156 + 0 NA intron (ENSMUSG00000072294.5, intron 1 of 7) protein_coding-intron (ENSMUSG00000072294.5, intron 1 of 3) -3289 ENSMUSG00000054391.12 ENSMUSG00000054391 ENSMUST00000145018 4930517O19Rik antisense Interval_103525 chr3 46794812 46795311 + 0 NA Intergenic Intergenic 105721 ENSMUSG00000098417.1 ENSMUSG00000098417 ENSMUST00000183392 Mir6379 miRNA Interval_137727 chr6 81794927 81795955 + 0 NA Intergenic Intergenic -11350 ENSMUSG00000089445.1 ENSMUSG00000089445 ENSMUST00000158820 Gm22530 snoRNA Interval_18248 chr10 84260088 84260814 + 0 NA Intergenic Intergenic -38394 ENSMUSG00000111062.1 ENSMUSG00000111062 ENSMUST00000216890 Gm47253 lincRNA Interval_144791 chr7 28289910 28291357 + 0 NA exon (ENSMUSG00000046750.17, exon 1 of 6) protein_coding-exon (ENSMUSG00000046750.17, exon 1 of 6) -2451 ENSMUSG00000046750.17 ENSMUSG00000046750 ENSMUST00000156408 Selenov protein_coding Interval_22199 chr11 7108818 7109273 + 0 NA exon (ENSMUSG00000020431.5, exon 4 of 20) protein_coding-exon (ENSMUSG00000020431.5, exon 4 of 20) -50837 ENSMUSG00000020431.5 ENSMUSG00000020431 ENSMUST00000135398 Adcy1 protein_coding Interval_157970 chr8 77421436 77421793 + 0 NA intron (ENSMUSG00000037148.8, intron 5 of 21) protein_coding-intron (ENSMUSG00000037148.8, intron 5 of 22) -49098 ENSMUSG00000109873.1 ENSMUSG00000109873 ENSMUST00000209499 Gm45407 TEC Interval_50339 chr14 11922696 11922885 + 0 NA intron (ENSMUSG00000021745.14, intron 2 of 3) protein_coding-intron (ENSMUSG00000021745.14, intron 2 of 29) 18111 ENSMUSG00000114267.1 ENSMUSG00000114267 ENSMUST00000225771 Gm48600 TEC Interval_91235 chr2 36214006 36214830 + 0 NA Intergenic Intergenic -2359 ENSMUSG00000087187.1 ENSMUSG00000087187 ENSMUST00000129699 Gm13431 lincRNA Interval_147958 chr7 75880323 75881631 + 0 NA Intergenic Intergenic 32580 ENSMUSG00000055652.14 ENSMUSG00000055652 ENSMUST00000205887 Klhl25 protein_coding Interval_137389 chr6 71865134 71865431 + 0 NA exon (ENSMUSG00000052337.15, exon 1 of 1) protein_coding-exon (ENSMUSG00000052337.15, exon 1 of 1) 4723 ENSMUSG00000108681.1 ENSMUSG00000108681 ENSMUST00000206836 Gm17825 processed_pseudogene Interval_170997 chr9 113601802 113602294 + 0 NA intron (ENSMUSG00000109890.2, intron 1 of 4) lincRNA-intron (ENSMUSG00000109890.2, intron 1 of 4) 40006 ENSMUSG00000111364.1 ENSMUSG00000111364 ENSMUST00000213455 Gm36745 lincRNA Interval_77670 chr17 93960464 93961168 + 0 NA Intergenic Intergenic 171455 ENSMUSG00000117543.1 ENSMUSG00000117543 ENSMUST00000235005 Gm50004 processed_pseudogene Interval_20007 chr10 111921688 111922059 + 0 NA Intergenic Intergenic 32859 ENSMUSG00000112628.1 ENSMUSG00000112628 ENSMUST00000217819 Gm47880 processed_pseudogene Interval_157944 chr8 77041135 77041519 + 0 NA intron (ENSMUSG00000031618.13, intron 2 of 6) protein_coding-intron (ENSMUSG00000031618.13, intron 1 of 7) 105153 ENSMUSG00000089309.1 ENSMUSG00000089309 ENSMUST00000158684 Gm24838 snoRNA Interval_67751 chr16 56862981 56863490 + 0 NA intron (ENSMUSG00000022754.6, intron 1 of 5) protein_coding-intron (ENSMUSG00000022754.6, intron 1 of 5) 4480 ENSMUSG00000022754.6 ENSMUSG00000022754 ENSMUST00000135672 Tmem45a protein_coding Interval_36747 chr12 52891053 52891400 + 0 NA intron (ENSMUSG00000061603.8, intron 3 of 11) protein_coding-intron (ENSMUSG00000061603.8, intron 4 of 13) 95390 ENSMUSG00000061603.8 ENSMUSG00000061603 ENSMUST00000219786 Akap6 protein_coding Interval_57957 chr15 25740017 25740880 + 0 NA intron (ENSMUSG00000022272.17, intron 16 of 21) protein_coding-intron (ENSMUSG00000022272.17, intron 17 of 40) -28108 ENSMUSG00000022272.17 ENSMUSG00000022272 ENSMUST00000145587 Myo10 protein_coding Interval_117306 chr4 122878023 122879020 + 0 NA intron (ENSMUSG00000028656.14, intron 1 of 2) protein_coding-intron (ENSMUSG00000028656.14, intron 1 of 12) 7343 ENSMUSG00000028656.14 ENSMUSG00000028656 ENSMUST00000151041 Cap1 protein_coding Interval_3324 chr1 56937805 56939210 + 0 NA intron (ENSMUSG00000038331.15, intron 2 of 9) protein_coding-intron (ENSMUSG00000038331.15, intron 2 of 9) 31365 ENSMUSG00000038331.15 ENSMUSG00000038331 ENSMUST00000177282 Satb2 protein_coding Interval_102851 chr3 32286028 32286557 + 0 NA Intergenic Intergenic 25959 ENSMUSG00000103643.1 ENSMUSG00000103643 ENSMUST00000192855 Gm37770 processed_pseudogene Interval_96177 chr2 120304472 120305184 + 0 NA intron (ENSMUSG00000046971.7, intron 8 of 14) protein_coding-intron (ENSMUSG00000046971.7, intron 12 of 19) 7549 ENSMUSG00000046971.7 ENSMUSG00000046971 ENSMUST00000054651 Pla2g4f protein_coding Interval_157463 chr8 70522452 70523651 + 0 NA promoter-TSS (ENSMUSG00000055553.16) protein_coding-promoter-TSS (ENSMUSG00000055553.16) 129 ENSMUSG00000055553.16 ENSMUSG00000055553 ENSMUST00000138586 Kxd1 protein_coding Interval_48361 chr13 98516520 98516838 + 0 NA TTS (ENSMUSG00000104430.1) TEC-TTS (ENSMUSG00000104430.1) 1259 ENSMUSG00000104430.1 ENSMUSG00000104430 ENSMUST00000193184 Gm37425 TEC Interval_108962 chr3 133619006 133619339 + 0 NA Intergenic Intergenic 15586 ENSMUSG00000102530.1 ENSMUSG00000102530 ENSMUST00000193574 Gm37228 TEC Interval_104690 chr3 69473982 69474388 + 0 NA intron (ENSMUSG00000027784.10, intron 1 of 3) protein_coding-intron (ENSMUSG00000027784.10, intron 1 of 3) -23028 ENSMUSG00000027784.10 ENSMUSG00000027784 ENSMUST00000128637 Ppm1l protein_coding Interval_5991 chr1 93753846 93755675 + 0 NA promoter-TSS (ENSMUSG00000026280.17) protein_coding-promoter-TSS (ENSMUSG00000026280.17) 20 ENSMUSG00000026279.14 ENSMUSG00000026279 ENSMUST00000189173 Thap4 protein_coding Interval_163730 chr9 24974175 24974635 + 0 NA intron (ENSMUSG00000111866.1, intron 1 of 4) lincRNA-intron (ENSMUSG00000111866.1, intron 1 of 4) 197 ENSMUSG00000111866.1 ENSMUSG00000111866 ENSMUST00000214469 E130101E03Rik lincRNA Interval_114663 chr4 83570786 83571239 + 0 NA intron (ENSMUSG00000052407.17, intron 6 of 25) protein_coding-intron (ENSMUSG00000052407.17, intron 6 of 25) -26291 ENSMUSG00000098217.1 ENSMUSG00000098217 ENSMUST00000182160 Gm27046 processed_pseudogene Interval_25731 chr11 51201115 51201475 + 0 NA intron (ENSMUSG00000086646.7, intron 1 of 3) lincRNA-intron (ENSMUSG00000086646.7, intron 1 of 3) 19123 ENSMUSG00000086646.7 ENSMUSG00000086646 ENSMUST00000137964 Platr20 lincRNA Interval_49498 chr13 112449672 112449851 + 0 NA Intergenic Intergenic -13165 ENSMUSG00000114468.1 ENSMUSG00000114468 ENSMUST00000225524 Gm48879 lincRNA Interval_20945 chr10 122577949 122578663 + 0 NA Intergenic Intergenic -8415 ENSMUSG00000112095.1 ENSMUSG00000112095 ENSMUST00000219429 A130077B15Rik lincRNA Interval_107822 chr3 115820616 115821095 + 0 NA Intergenic Intergenic -66997 ENSMUSG00000033554.17 ENSMUSG00000033554 ENSMUST00000199970 Dph5 protein_coding Interval_56774 chr14 122012858 122014024 + 0 NA intron (ENSMUSG00000041765.6, intron 8 of 8) protein_coding-intron (ENSMUSG00000041765.6, intron 8 of 8) -21233 ENSMUSG00000071229.3 ENSMUSG00000071229 ENSMUST00000045976 Timm8a2 protein_coding Interval_50423 chr14 12876872 12877242 + 0 NA Intergenic Intergenic 9504 ENSMUSG00000021741.4 ENSMUSG00000021741 ENSMUST00000022260 Gm5457 processed_pseudogene Interval_168241 chr9 78131449 78132023 + 0 NA exon (ENSMUSG00000009828.15, exon 2 of 2) protein_coding-exon (ENSMUSG00000009828.15, exon 2 of 2) 18893 ENSMUSG00000009828.15 ENSMUSG00000009828 ENSMUST00000142402 Cilk1 protein_coding Interval_107091 chr3 103462065 103462402 + 0 NA Intergenic Intergenic -16433 ENSMUSG00000065029.1 ENSMUSG00000065029 ENSMUST00000083095 Gm25199 snRNA Interval_88935 chr2 13175292 13175947 + 0 NA intron (ENSMUSG00000026727.10, intron 8 of 8) protein_coding-intron (ENSMUSG00000026727.10, intron 7 of 8) -11996 ENSMUSG00000102691.1 ENSMUSG00000102691 ENSMUST00000194117 Gm37780 TEC Interval_15299 chr10 44315290 44317307 + 0 NA intron (ENSMUSG00000038160.7, intron 5 of 7) protein_coding-intron (ENSMUSG00000038160.7, intron 5 of 7) -43378 ENSMUSG00000089260.1 ENSMUSG00000089260 ENSMUST00000158635 Mir1929 miRNA Interval_107194 chr3 104495715 104497093 + 0 NA intron (ENSMUSG00000032913.13, intron 2 of 17) protein_coding-intron (ENSMUSG00000032913.13, intron 2 of 17) 5203 ENSMUSG00000104973.1 ENSMUSG00000104973 ENSMUST00000199690 A530041M06Rik sense_intronic Interval_57986 chr15 25858210 25859097 + 0 NA intron (ENSMUSG00000022270.16, intron 1 of 8) protein_coding-intron (ENSMUSG00000022270.16, intron 1 of 8) -18042 ENSMUSG00000115593.1 ENSMUSG00000115593 ENSMUST00000228649 Gm4824 processed_pseudogene Interval_65749 chr16 27087622 27088334 + 0 NA Intergenic Intergenic -119733 ENSMUSG00000068428.7 ENSMUSG00000068428 ENSMUST00000231299 Gmnc protein_coding Interval_93057 chr2 69860861 69862409 + 0 NA promoter-TSS (ENSMUSG00000068882.13) protein_coding-promoter-TSS (ENSMUSG00000068882.13) 73 ENSMUSG00000068882.13 ENSMUSG00000068882 ENSMUST00000132603 Ssb protein_coding Interval_155986 chr8 41491196 41491471 + 0 NA Intergenic Intergenic -78411 ENSMUSG00000031590.8 ENSMUSG00000031590 ENSMUST00000210873 Frg1 protein_coding Interval_128226 chr5 111870502 111870713 + 0 NA Intergenic Intergenic 73628 ENSMUSG00000106060.1 ENSMUSG00000106060 ENSMUST00000197648 Gm42488 lincRNA Interval_11579 chr1 182908593 182908851 + 0 NA exon (ENSMUSG00000102291.1, exon 1 of 1) TEC-exon (ENSMUSG00000102291.1, exon 1 of 1) 1012 ENSMUSG00000102291.1 ENSMUSG00000102291 ENSMUST00000192563 Gm37542 TEC Interval_137205 chr6 69967617 69968617 + 0 NA Intergenic Intergenic -4244 ENSMUSG00000076571.2 ENSMUSG00000076571 ENSMUST00000103372 Igkv5-37 IG_V_gene Interval_122483 chr5 23379333 23380205 + 0 NA Intergenic Intergenic 3273 ENSMUSG00000105091.1 ENSMUSG00000105091 ENSMUST00000196054 Gm43722 processed_pseudogene Interval_9055 chr1 153320210 153321009 + 0 NA intron (ENSMUSG00000026478.14, intron 1 of 27) protein_coding-intron (ENSMUSG00000026478.14, intron 1 of 27) 15177 ENSMUSG00000079138.3 ENSMUSG00000079138 ENSMUST00000110797 Gm8818 processed_pseudogene Interval_6923 chr1 120741253 120742390 + 0 NA Intergenic Intergenic -16622 ENSMUSG00000101386.1 ENSMUSG00000101386 ENSMUST00000188147 Gm29346 lincRNA Interval_102992 chr3 34064157 34064891 + 0 NA intron (ENSMUSG00000027680.15, intron 15 of 15) protein_coding-intron (ENSMUSG00000027680.15, intron 14 of 16) -6135 ENSMUSG00000105176.1 ENSMUSG00000105176 ENSMUST00000197014 Gm43668 TEC Interval_24232 chr11 31679151 31680646 + 0 NA Intergenic Intergenic -8171 ENSMUSG00000044502.16 ENSMUSG00000044502 ENSMUST00000109415 Bod1 protein_coding Interval_58714 chr15 37291317 37291744 + 0 NA intron (ENSMUSG00000022286.16, intron 6 of 9) protein_coding-intron (ENSMUSG00000022286.16, intron 6 of 15) 5937 ENSMUSG00000022286.16 ENSMUSG00000022286 ENSMUST00000159221 Grhl2 protein_coding Interval_67100 chr16 42955606 42955948 + 0 NA exon (ENSMUSG00000081824.5, exon 1 of 1) processed_pseudogene-exon (ENSMUSG00000081824.5, exon 1 of 1) 146 ENSMUSG00000081824.5 ENSMUSG00000081824 ENSMUST00000121906 Ndufs5-ps processed_pseudogene Interval_133988 chr6 17416848 17417068 + 0 NA Intergenic Intergenic -19348 ENSMUSG00000093902.1 ENSMUSG00000093902 ENSMUST00000179184 Gm25021 snRNA Interval_46752 chr13 69933093 69933620 + 0 NA Intergenic Intergenic -26477 ENSMUSG00000113802.1 ENSMUSG00000113802 ENSMUST00000220972 4933416O17Rik lincRNA Interval_124670 chr5 53048079 53050233 + 0 NA promoter-TSS (ENSMUSG00000029188.14) protein_coding-promoter-TSS (ENSMUSG00000029188.14) 32 ENSMUSG00000090642.2 ENSMUSG00000090642 ENSMUST00000163795 Gm17182 antisense Interval_35973 chr12 33027129 33029056 + 0 NA Intergenic Intergenic -28082 ENSMUSG00000089136.1 ENSMUSG00000089136 ENSMUST00000158511 Gm24922 snRNA Interval_114568 chr4 82542054 82542486 + 0 NA intron (ENSMUSG00000087413.1, intron 1 of 1) antisense-intron (ENSMUSG00000087413.1, intron 1 of 1) 34254 ENSMUSG00000087413.1 ENSMUSG00000087413 ENSMUST00000139835 Gm11266 antisense Interval_49473 chr13 112287313 112288951 + 0 NA promoter-TSS (ENSMUSG00000049985.15) protein_coding-promoter-TSS (ENSMUSG00000049985.15) -319 ENSMUSG00000049985.15 ENSMUSG00000049985 ENSMUST00000223871 Ankrd55 protein_coding Interval_125881 chr5 75365782 75366303 + 0 NA Intergenic Intergenic 6103 ENSMUSG00000088210.1 ENSMUSG00000088210 ENSMUST00000157585 Gm22084 snRNA Interval_49519 chr13 112660156 112661294 + 0 NA promoter-TSS (ENSMUSG00000047789.5) protein_coding-promoter-TSS (ENSMUSG00000047789.5) -8250 ENSMUSG00000021758.14 ENSMUSG00000021758 ENSMUST00000099166 Ddx4 protein_coding Interval_42857 chr13 20450790 20451166 + 0 NA intron (ENSMUSG00000041112.17, intron 16 of 21) protein_coding-intron (ENSMUSG00000041112.17, intron 16 of 21) 22512 ENSMUSG00000113313.1 ENSMUSG00000113313 ENSMUST00000221484 Gm32036 antisense Interval_25218 chr11 45524693 45525016 + 0 NA Intergenic Intergenic -104070 ENSMUSG00000085476.1 ENSMUSG00000085476 ENSMUST00000123422 Gm12162 lincRNA Interval_2293 chr1 37737178 37737408 + 0 NA Intergenic Intergenic -17208 ENSMUSG00000026090.16 ENSMUSG00000026090 ENSMUST00000160589 2010300C02Rik protein_coding Interval_139100 chr6 95109637 95110819 + 0 NA Intergenic Intergenic 7403 ENSMUSG00000085413.1 ENSMUSG00000085413 ENSMUST00000135145 Kbtbd8os antisense Interval_132858 chr5 148359300 148359993 + 0 NA intron (ENSMUSG00000041313.14, intron 2 of 2) protein_coding-intron (ENSMUSG00000041313.14, intron 2 of 12) 40145 ENSMUSG00000041313.14 ENSMUSG00000041313 ENSMUST00000201348 Slc7a1 protein_coding Interval_69941 chr17 3352811 3353576 + 0 NA intron (ENSMUSG00000023800.15, intron 1 of 26) protein_coding-intron (ENSMUSG00000023800.15, intron 1 of 26) -6126 ENSMUSG00000115330.1 ENSMUSG00000115330 ENSMUST00000226386 Gm49221 processed_pseudogene Interval_154753 chr8 23130712 23132533 + 0 NA intron (ENSMUSG00000031543.18, intron 39 of 44) protein_coding-intron (ENSMUSG00000031543.18, intron 38 of 44) 4166 ENSMUSG00000083285.2 ENSMUSG00000083285 ENSMUST00000120569 Gm15815 processed_pseudogene Interval_28251 chr11 74691110 74691734 + 0 NA intron (ENSMUSG00000020745.15, intron 2 of 9) protein_coding-intron (ENSMUSG00000020745.15, intron 2 of 10) 32896 ENSMUSG00000020745.15 ENSMUSG00000020745 ENSMUST00000155493 Pafah1b1 protein_coding Interval_6287 chr1 105431883 105432241 + 0 NA intron (ENSMUSG00000101214.1, intron 1 of 5) sense_overlapping-intron (ENSMUSG00000101214.1, intron 1 of 5) -23909 ENSMUSG00000067017.5 ENSMUSG00000067017 ENSMUST00000086725 Capza1-ps1 pseudogene Interval_114033 chr4 62633953 62634547 + 0 NA promoter-TSS (ENSMUSG00000085177.1) antisense-promoter-TSS (ENSMUSG00000085177.1) -538 ENSMUSG00000085177.1 ENSMUSG00000085177 ENSMUST00000130206 Gm11209 antisense Interval_88531 chr2 5868875 5869941 + 0 NA TTS (ENSMUSG00000025817.12) protein_coding-TTS (ENSMUSG00000025817.12) -6474 ENSMUSG00000056718.2 ENSMUSG00000056718 ENSMUST00000071016 Gm13199 protein_coding Interval_116332 chr4 109895899 109896350 + 0 NA intron (ENSMUSG00000010517.7, intron 5 of 5) protein_coding-intron (ENSMUSG00000010517.7, intron 15 of 18) 55339 ENSMUSG00000010517.7 ENSMUSG00000010517 ENSMUST00000155204 Faf1 protein_coding Interval_112465 chr4 41406808 41407015 + 0 NA intron (ENSMUSG00000028438.16, intron 3 of 9) protein_coding-intron (ENSMUSG00000028438.16, intron 3 of 9) 35663 ENSMUSG00000028437.14 ENSMUSG00000028437 ENSMUST00000132235 Ubap1 protein_coding Interval_123391 chr5 32134949 32136853 + 0 NA promoter-TSS (ENSMUSG00000029135.10) protein_coding-promoter-TSS (ENSMUSG00000029135.10) -2730 ENSMUSG00000102759.1 ENSMUSG00000102759 ENSMUST00000195772 Gm10463 TEC Interval_49852 chr13 117202749 117203026 + 0 NA Intergenic Intergenic -5649 ENSMUSG00000021728.8 ENSMUSG00000021728 ENSMUST00000224455 Emb protein_coding Interval_51443 chr14 27601878 27603045 + 0 NA Intergenic Intergenic -50303 ENSMUSG00000114482.1 ENSMUSG00000114482 ENSMUST00000225617 Gm7604 processed_pseudogene Interval_2380 chr1 38834909 38837160 + 0 NA exon (ENSMUSG00000048814.11, exon 1 of 12) protein_coding-exon (ENSMUSG00000048814.11, exon 1 of 12) 340 ENSMUSG00000048814.11 ENSMUSG00000048814 ENSMUST00000191724 Lonrf2 protein_coding Interval_119180 chr4 136039894 136040394 + 0 NA intron (ENSMUSG00000059291.15, intron 3 of 4) protein_coding-intron (ENSMUSG00000059291.15, intron 3 of 4) 12946 ENSMUSG00000059291.15 ENSMUSG00000059291 ENSMUST00000128733 Rpl11 protein_coding Interval_21874 chr11 4882877 4884138 + 0 NA intron (ENSMUSG00000034285.15, intron 2 of 6) protein_coding-intron (ENSMUSG00000034285.15, intron 2 of 9) 301 ENSMUSG00000034285.15 ENSMUSG00000034285 ENSMUST00000141269 Nipsnap1 protein_coding Interval_168616 chr9 84234065 84234276 + 0 NA Intergenic Intergenic 45815 ENSMUSG00000077666.1 ENSMUSG00000077666 ENSMUST00000104478 Gm26146 snRNA Interval_930 chr1 13253579 13253778 + 0 NA intron (ENSMUSG00000005886.14, intron 1 of 3) protein_coding-intron (ENSMUSG00000005886.14, intron 2 of 22) -8520 ENSMUSG00000099183.1 ENSMUSG00000099183 ENSMUST00000183805 Gm27881 miRNA Interval_129441 chr5 120183048 120183505 + 0 NA intron (ENSMUSG00000029594.12, intron 2 of 3) protein_coding-intron (ENSMUSG00000029594.12, intron 22 of 23) 7551 ENSMUSG00000029594.12 ENSMUSG00000029594 ENSMUST00000202788 Rbm19 protein_coding Interval_146290 chr7 45161905 45162636 + 0 NA Intergenic Intergenic -7631 ENSMUSG00000070570.5 ENSMUSG00000070570 ENSMUST00000211652 Slc17a7 protein_coding Interval_136235 chr6 52211282 52212332 + 0 NA intron (ENSMUSG00000085696.8, intron 1 of 2) protein_coding-intron (ENSMUSG00000079560.13, intron 1 of 4) 1532 ENSMUSG00000101298.1 ENSMUSG00000101298 ENSMUST00000128102 Gm28308 protein_coding Interval_98964 chr2 156379610 156381794 + 0 NA Intergenic Intergenic -1734 ENSMUSG00000087323.1 ENSMUSG00000087323 ENSMUST00000133751 Gm14170 antisense Interval_94158 chr2 84751458 84751799 + 0 NA Intergenic Intergenic -7973 ENSMUSG00000097187.1 ENSMUSG00000097187 ENSMUST00000181711 Gm19426 protein_coding Interval_98074 chr2 147541401 147541788 + 0 NA Intergenic Intergenic 101583 ENSMUSG00000080844.1 ENSMUSG00000080844 ENSMUST00000117774 Gm14107 processed_pseudogene Interval_2901 chr1 48732190 48732420 + 0 NA exon (ENSMUSG00000101721.1, exon 2 of 2) processed_pseudogene-exon (ENSMUSG00000101721.1, exon 2 of 2) 785 ENSMUSG00000101721.1 ENSMUSG00000101721 ENSMUST00000189223 Gm8354 processed_pseudogene Interval_82122 chr18 67851083 67851529 + 0 NA promoter-TSS (ENSMUSG00000024542.9) protein_coding-promoter-TSS (ENSMUSG00000024542.9) -19021 ENSMUSG00000024542.9 ENSMUSG00000024542 ENSMUST00000225589 Cep192 protein_coding Interval_126490 chr5 89043928 89045126 + 0 NA intron (ENSMUSG00000060961.16, intron 5 of 25) protein_coding-intron (ENSMUSG00000060961.16, intron 5 of 24) 158041 ENSMUSG00000060961.16 ENSMUSG00000060961 ENSMUST00000134303 Slc4a4 protein_coding Interval_120178 chr4 143203497 143203700 + 0 NA promoter-TSS (ENSMUSG00000087903.1) snoRNA-promoter-TSS (ENSMUSG00000087903.1) -467 ENSMUSG00000087903.1 ENSMUSG00000087903 ENSMUST00000157278 Gm22039 snoRNA Interval_71556 chr17 24538749 24540849 + 0 NA intron (ENSMUSG00000117423.1, intron 2 of 2) antisense-intron (ENSMUSG00000117423.1, intron 2 of 2) 5885 ENSMUSG00000117423.1 ENSMUSG00000117423 ENSMUST00000234764 Gm33508 antisense Interval_139308 chr6 98368506 98369278 + 0 NA Intergenic Intergenic -26233 ENSMUSG00000090667.2 ENSMUSG00000090667 ENSMUST00000204914 Gm765 protein_coding Interval_71479 chr17 24052958 24053411 + 0 NA intron (ENSMUSG00000016946.6, intron 5 of 5) protein_coding-intron (ENSMUSG00000016946.6, intron 5 of 5) 7133 ENSMUSG00000016946.6 ENSMUSG00000016946 ENSMUST00000234555 Kctd5 protein_coding Interval_156483 chr8 48632167 48632550 + 0 NA intron (ENSMUSG00000031561.16, intron 2 of 26) protein_coding-intron (ENSMUSG00000031561.16, intron 2 of 28) -1189 ENSMUSG00000110509.1 ENSMUSG00000110509 ENSMUST00000212961 Gm45772 processed_pseudogene Interval_167644 chr9 71485311 71486475 + 0 NA promoter-TSS (ENSMUSG00000032199.13) protein_coding-promoter-TSS (ENSMUSG00000032199.13) 12 ENSMUSG00000032199.13 ENSMUSG00000032199 ENSMUST00000233263 Polr2m protein_coding Interval_96602 chr2 126304245 126304831 + 0 NA Intergenic Intergenic -35175 ENSMUSG00000089480.1 ENSMUSG00000089480 ENSMUST00000158855 Gm24739 misc_RNA Interval_18336 chr10 85020453 85020994 + 0 NA Intergenic Intergenic 81772 ENSMUSG00000050035.7 ENSMUSG00000050035 ENSMUST00000216889 Fhl4 protein_coding Interval_80760 chr18 46906011 46906438 + 0 NA exon (ENSMUSG00000024481.5, exon 20 of 20) protein_coding-exon (ENSMUSG00000024481.5, exon 20 of 20) 2701 ENSMUSG00000117630.1 ENSMUSG00000117630 ENSMUST00000234575 Gm49973 processed_pseudogene Interval_63429 chr15 101015716 101017483 + 0 NA intron (ENSMUSG00000023033.14, intron 18 of 26) protein_coding-intron (ENSMUSG00000023033.14, intron 18 of 26) 30798 ENSMUSG00000113558.1 ENSMUSG00000113558 ENSMUST00000222611 Tmdd1 protein_coding Interval_112236 chr4 37367842 37368122 + 0 NA Intergenic Intergenic 70077 ENSMUSG00000088718.1 ENSMUSG00000088718 ENSMUST00000158093 Gm22732 snoRNA Interval_19295 chr10 96238526 96238867 + 0 NA intron (ENSMUSG00000112762.1, intron 3 of 5) lincRNA-intron (ENSMUSG00000112762.1, intron 1 of 2) 12676 ENSMUSG00000112762.1 ENSMUSG00000112762 ENSMUST00000218720 4930459C07Rik lincRNA Interval_80443 chr18 42274800 42276057 + 0 NA promoter-TSS (ENSMUSG00000024491.16) protein_coding-promoter-TSS (ENSMUSG00000024491.16) -231 ENSMUSG00000117662.1 ENSMUSG00000117662 ENSMUST00000236054 Gm4013 processed_transcript Interval_25901 chr11 52419164 52419742 + 0 NA Intergenic Intergenic 14137 ENSMUSG00000080951.1 ENSMUSG00000080951 ENSMUST00000122004 Gm12208 processed_pseudogene Interval_65020 chr16 18509576 18509789 + 0 NA intron (ENSMUSG00000000884.17, intron 2 of 2) protein_coding-intron (ENSMUSG00000000884.17, intron 2 of 7) 10742 ENSMUSG00000000884.17 ENSMUSG00000000884 ENSMUST00000151253 Gnb1l protein_coding Interval_127113 chr5 100370666 100371512 + 0 NA intron (ENSMUSG00000035325.16, intron 1 of 6) protein_coding-intron (ENSMUSG00000035325.16, intron 1 of 6) -15970 ENSMUSG00000085915.1 ENSMUSG00000085915 ENSMUST00000150506 Gm8091 unprocessed_pseudogene Interval_153710 chr8 4920544 4920836 + 0 NA Intergenic Intergenic 59521 ENSMUSG00000062152.4 ENSMUSG00000062152 ENSMUST00000080279 Rpl21-ps14 processed_pseudogene Interval_128744 chr5 115042322 115042644 + 0 NA intron (ENSMUSG00000029550.11, intron 2 of 2) protein_coding-intron (ENSMUSG00000029550.11, intron 1 of 10) 2713 ENSMUSG00000107054.1 ENSMUSG00000107054 ENSMUST00000201944 C730045M19Rik TEC Interval_148000 chr7 77388258 77388681 + 0 NA Intergenic Intergenic -24104 ENSMUSG00000108324.1 ENSMUSG00000108324 ENSMUST00000206827 Gm44608 TEC Interval_30676 chr11 95827210 95827658 + 0 NA intron (ENSMUSG00000050860.6, intron 1 of 2) protein_coding-intron (ENSMUSG00000050860.6, intron 1 of 2) -3329 ENSMUSG00000050860.6 ENSMUSG00000050860 ENSMUST00000176538 Phospho1 protein_coding Interval_41625 chr12 117151005 117154619 + 0 NA intron (ENSMUSG00000056553.14, intron 12 of 22) protein_coding-intron (ENSMUSG00000056553.14, intron 12 of 22) -1597 ENSMUSG00000099907.1 ENSMUSG00000099907 ENSMUST00000186114 Gm10421 processed_transcript Interval_152253 chr7 130950888 130951713 + 0 NA intron (ENSMUSG00000006205.13, intron 1 of 8) protein_coding-intron (ENSMUSG00000006205.13, intron 1 of 8) 7811 ENSMUSG00000006205.13 ENSMUSG00000006205 ENSMUST00000150905 Htra1 protein_coding Interval_77022 chr17 85690514 85691242 + 0 NA Intergenic Intergenic -2604 ENSMUSG00000024134.11 ENSMUSG00000024134 ENSMUST00000024947 Six2 protein_coding Interval_169243 chr9 95765338 95765847 + 0 NA intron (ENSMUSG00000049493.13, intron 12 of 15) protein_coding-intron (ENSMUSG00000049493.13, intron 12 of 15) -15234 ENSMUSG00000032839.13 ENSMUSG00000032839 ENSMUST00000190205 Trpc1 protein_coding Interval_94308 chr2 87871157 87871661 + 0 NA promoter-TSS (ENSMUSG00000082056.1) processed_pseudogene-promoter-TSS (ENSMUSG00000082056.1) -272 ENSMUSG00000082056.1 ENSMUSG00000082056 ENSMUST00000121994 Gm13745 processed_pseudogene Interval_95715 chr2 114653662 114655532 + 0 NA intron (ENSMUSG00000084785.1, intron 1 of 1) protein_coding-intron (ENSMUSG00000057147.13, intron 1 of 7) 172 ENSMUSG00000084785.1 ENSMUSG00000084785 ENSMUST00000153726 Gm13972 processed_transcript Interval_92326 chr2 58786512 58787034 + 0 NA intron (ENSMUSG00000026839.17, intron 7 of 7) protein_coding-intron (ENSMUSG00000026839.17, intron 7 of 7) 46134 ENSMUSG00000080985.1 ENSMUSG00000080985 ENSMUST00000120476 Gm13559 processed_pseudogene Interval_62290 chr15 89475730 89476774 + 0 NA promoter-TSS (ENSMUSG00000022620.14) protein_coding-promoter-TSS (ENSMUSG00000022620.14) -1487 ENSMUSG00000084915.2 ENSMUSG00000084915 ENSMUST00000168835 C230037L18Rik antisense Interval_133161 chr5 150253135 150253420 + 0 NA intron (ENSMUSG00000056602.12, intron 1 of 3) protein_coding-intron (ENSMUSG00000056602.12, intron 2 of 4) 9414 ENSMUSG00000107082.1 ENSMUSG00000107082 ENSMUST00000201709 Gm36378 processed_pseudogene Interval_1701 chr1 31600812 31601097 + 0 NA Intergenic Intergenic -14195 ENSMUSG00000070960.4 ENSMUSG00000070960 ENSMUST00000095050 Gm19680 processed_pseudogene Interval_56044 chr14 105123313 105123901 + 0 NA intron (ENSMUSG00000022119.15, intron 3 of 5) protein_coding-intron (ENSMUSG00000022119.15, intron 19 of 21) 6730 ENSMUSG00000022119.15 ENSMUSG00000022119 ENSMUST00000163499 Rbm26 protein_coding Interval_128077 chr5 110732786 110733421 + 0 NA intron (ENSMUSG00000029505.17, intron 6 of 50) protein_coding-intron (ENSMUSG00000029505.17, intron 7 of 51) -23982 ENSMUSG00000096238.1 ENSMUSG00000096238 ENSMUST00000178031 Gm22583 snRNA Interval_135618 chr6 41622736 41623000 + 0 NA TTS (ENSMUSG00000029868.14) protein_coding-TTS (ENSMUSG00000029868.14) 9570 ENSMUSG00000029869.7 ENSMUSG00000029869 ENSMUST00000167497 Ephb6 protein_coding Interval_122353 chr5 21645145 21646607 + 0 NA promoter-TSS (ENSMUSG00000048520.16) protein_coding-promoter-TSS (ENSMUSG00000048520.16) 63 ENSMUSG00000038525.16 ENSMUSG00000038525 ENSMUST00000139521 Armc10 protein_coding Interval_24418 chr11 33117743 33119430 + 0 NA intron (ENSMUSG00000057967.12, intron 3 of 3) protein_coding-intron (ENSMUSG00000057967.12, intron 4 of 4) 28209 ENSMUSG00000057967.12 ENSMUSG00000057967 ENSMUST00000020507 Fgf18 protein_coding Interval_47580 chr13 89452476 89453020 + 0 NA Intergenic Intergenic 125671 ENSMUSG00000094463.2 ENSMUSG00000094463 ENSMUST00000178288 Gm8546 processed_pseudogene Interval_54250 chr14 66873269 66873634 + 0 NA Intergenic Intergenic 4601 ENSMUSG00000075553.2 ENSMUSG00000075553 ENSMUST00000225817 Gm5464 lincRNA Interval_74058 chr17 46316335 46317690 + 0 NA intron (ENSMUSG00000032842.13, intron 1 of 4) protein_coding-intron (ENSMUSG00000032842.13, intron 5 of 19) 10964 ENSMUSG00000032842.13 ENSMUSG00000032842 ENSMUST00000170168 Abcc10 protein_coding Interval_134987 chr6 34346315 34346816 + 0 NA Intergenic Intergenic -9550 ENSMUSG00000029762.6 ENSMUSG00000029762 ENSMUST00000133370 Akr1b8 protein_coding Interval_43011 chr13 22992227 22993427 + 0 NA Intergenic Intergenic 3673 ENSMUSG00000079064.2 ENSMUSG00000079064 ENSMUST00000110449 Vmn1r-ps123 unprocessed_pseudogene Interval_66423 chr16 33772392 33772607 + 0 NA TTS (ENSMUSG00000075254.12) protein_coding-TTS (ENSMUSG00000075254.12) -21538 ENSMUSG00000022824.12 ENSMUSG00000022824 ENSMUST00000023520 Muc13 protein_coding Interval_14460 chr10 34033763 34034213 + 0 NA Intergenic Intergenic 10309 ENSMUSG00000039508.6 ENSMUSG00000039508 ENSMUST00000218239 Calhm4 protein_coding Interval_100347 chr2 168562953 168563162 + 0 NA intron (ENSMUSG00000027544.16, intron 3 of 6) protein_coding-intron (ENSMUSG00000027544.16, intron 3 of 6) 38598 ENSMUSG00000027544.16 ENSMUSG00000027544 ENSMUST00000138546 Nfatc2 protein_coding Interval_702 chr1 10022724 10023075 + 0 NA Intergenic Intergenic -12982 ENSMUSG00000095780.1 ENSMUSG00000095780 ENSMUST00000179194 Gm24674 snRNA Interval_113905 chr4 59769547 59769767 + 0 NA TTS (ENSMUSG00000038544.14) protein_coding-TTS (ENSMUSG00000038544.14) 31932 ENSMUSG00000038544.14 ENSMUSG00000038544 ENSMUST00000138097 Inip protein_coding Interval_92836 chr2 66151348 66152665 + 0 NA intron (ENSMUSG00000100197.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000100197.1, intron 1 of 1) -6131 ENSMUSG00000080728.1 ENSMUSG00000080728 ENSMUST00000120600 Gm13616 processed_pseudogene Interval_234 KZ289068.1 240895 241427 + 0 NA NA NA NA NA Interval_109755 chr3 146637707 146638361 + 0 NA Intergenic Intergenic -10575 ENSMUSG00000085810.7 ENSMUSG00000085810 ENSMUST00000154128 Gm16325 antisense Interval_16129 chr10 60892030 60892476 + 0 NA Intergenic Intergenic -30770 ENSMUSG00000099279.1 ENSMUSG00000099279 ENSMUST00000183643 Mir6408 miRNA Interval_169954 chr9 103180495 103181319 + 0 NA intron (ENSMUSG00000032549.7, intron 7 of 7) protein_coding-intron (ENSMUSG00000032549.7, intron 7 of 7) 11405 ENSMUSG00000032553.14 ENSMUSG00000032553 ENSMUST00000190760 Srprb protein_coding Interval_97504 chr2 138033303 138033633 + 0 NA Intergenic Intergenic -156637 ENSMUSG00000086214.1 ENSMUSG00000086214 ENSMUST00000134795 Gm14062 lincRNA Interval_116936 chr4 118311259 118311662 + 0 NA Intergenic Intergenic -20186 ENSMUSG00000033295.14 ENSMUSG00000033295 ENSMUST00000222620 Ptprf protein_coding Interval_115067 chr4 89168759 89169143 + 0 NA intron (ENSMUSG00000062937.7, intron 4 of 7) protein_coding-intron (ENSMUSG00000062937.7, intron 4 of 7) -6760 ENSMUSG00000083989.2 ENSMUSG00000083989 ENSMUST00000120724 Gm12607 processed_pseudogene Interval_100088 chr2 167007106 167007848 + 0 NA exon (ENSMUSG00000082665.1, exon 2 of 2) processed_pseudogene-exon (ENSMUSG00000082665.1, exon 2 of 2) 1562 ENSMUSG00000082665.1 ENSMUSG00000082665 ENSMUST00000118868 Gm11470 processed_pseudogene Interval_149231 chr7 96496477 96496689 + 0 NA intron (ENSMUSG00000048078.16, intron 4 of 32) protein_coding-intron (ENSMUSG00000048078.16, intron 4 of 32) -60566 ENSMUSG00000082780.2 ENSMUSG00000082780 ENSMUST00000117302 Rps11-ps5 processed_pseudogene Interval_48043 chr13 95524222 95525917 + 0 NA exon (ENSMUSG00000021678.9, exon 1 of 2) protein_coding-exon (ENSMUSG00000021678.9, exon 1 of 2) 158 ENSMUSG00000021678.9 ENSMUSG00000021678 ENSMUST00000022185 F2rl1 protein_coding Interval_152091 chr7 129118713 129119110 + 0 NA Intergenic Intergenic -63835 ENSMUSG00000108785.1 ENSMUSG00000108785 ENSMUST00000206489 Gm4259 processed_pseudogene Interval_86719 chr19 43004970 43005212 + 0 NA intron (ENSMUSG00000074852.4, intron 4 of 8) protein_coding-intron (ENSMUSG00000074852.4, intron 4 of 11) 155811 ENSMUSG00000089377.1 ENSMUSG00000089377 ENSMUST00000158752 Gm22135 rRNA Interval_43535 chr13 32865752 32867193 + 0 NA Intergenic Intergenic -3302 ENSMUSG00000081433.1 ENSMUSG00000081433 ENSMUST00000118548 Serpinb1-ps1 unprocessed_pseudogene Interval_84109 chr19 7257638 7258324 + 0 NA Intergenic Intergenic -1960 ENSMUSG00000088680.1 ENSMUSG00000088680 ENSMUST00000158055 Gm23997 rRNA Interval_122213 chr5 19934145 19934428 + 0 NA intron (ENSMUSG00000040003.18, intron 1 of 21) protein_coding-intron (ENSMUSG00000040003.18, intron 2 of 22) -158329 ENSMUSG00000096882.1 ENSMUSG00000096882 ENSMUST00000083029 Gm23570 snRNA Interval_144567 chr7 26083379 26083601 + 0 NA intron (ENSMUSG00000040583.8, intron 4 of 8) protein_coding-intron (ENSMUSG00000040583.8, intron 4 of 8) 11417 ENSMUSG00000101800.1 ENSMUSG00000101800 ENSMUST00000181188 Rnf170-ps processed_pseudogene Interval_7941 chr1 134680519 134681286 + 0 NA intron (ENSMUSG00000026452.15, intron 2 of 9) protein_coding-intron (ENSMUSG00000026452.15, intron 1 of 2) 34221 ENSMUSG00000026452.15 ENSMUSG00000026452 ENSMUST00000187702 Syt2 protein_coding Interval_43336 chr13 29348221 29348874 + 0 NA intron (ENSMUSG00000006191.17, intron 15 of 15) protein_coding-intron (ENSMUSG00000006191.17, intron 15 of 15) -111927 ENSMUSG00000086423.1 ENSMUSG00000086423 ENSMUST00000137593 Gm11364 sense_intronic Interval_78405 chr18 12545449 12546964 + 0 NA intron (ENSMUSG00000024421.16, intron 23 of 37) protein_coding-intron (ENSMUSG00000024421.16, intron 60 of 74) 32331 ENSMUSG00000088342.1 ENSMUSG00000088342 ENSMUST00000157717 Gm22340 rRNA Interval_77739 chr17 94816612 94817022 + 0 NA promoter-TSS (ENSMUSG00000117499.1) TEC-promoter-TSS (ENSMUSG00000117499.1) -754 ENSMUSG00000117499.1 ENSMUSG00000117499 ENSMUST00000234240 Gm50010 TEC Interval_124362 chr5 44701142 44701543 + 0 NA intron (ENSMUSG00000105224.1, intron 1 of 1) protein_coding-intron (ENSMUSG00000039706.11, intron 1 of 7) 5548 ENSMUSG00000105224.1 ENSMUSG00000105224 ENSMUST00000196016 Gm3364 sense_intronic Interval_147815 chr7 73735804 73736536 + 0 NA Intergenic Intergenic 4854 ENSMUSG00000091890.2 ENSMUSG00000091890 ENSMUST00000169090 A830073O21Rik TEC Interval_159754 chr8 100975974 100976647 + 0 NA Intergenic Intergenic -249955 ENSMUSG00000109769.1 ENSMUSG00000109769 ENSMUST00000210760 Gm39232 lincRNA Interval_9002 chr1 153020774 153021101 + 0 NA intron (ENSMUSG00000042751.14, intron 2 of 8) protein_coding-intron (ENSMUSG00000042751.14, intron 1 of 10) 68570 ENSMUSG00000099969.1 ENSMUSG00000099969 ENSMUST00000190117 Gm28960 antisense Interval_15000 chr10 41816221 41816852 + 0 NA intron (ENSMUSG00000038332.13, intron 1 of 9) protein_coding-intron (ENSMUSG00000038332.13, intron 1 of 9) -6906 ENSMUSG00000019813.16 ENSMUSG00000019813 ENSMUST00000215496 Cep57l1 protein_coding Interval_74071 chr17 46419866 46420649 + 0 NA TTS (ENSMUSG00000015597.17) protein_coding-TTS (ENSMUSG00000015597.17) -10418 ENSMUSG00000023968.15 ENSMUSG00000023968 ENSMUST00000165750 Crip3 protein_coding Interval_81144 chr18 54912924 54913385 + 0 NA intron (ENSMUSG00000052713.9, intron 2 of 8) protein_coding-intron (ENSMUSG00000052713.9, intron 3 of 9) 43603 ENSMUSG00000052713.9 ENSMUSG00000052713 ENSMUST00000237009 Zfp608 protein_coding Interval_166262 chr9 57865987 57866193 + 0 NA Intergenic Intergenic -46544 ENSMUSG00000055720.10 ENSMUSG00000055720 ENSMUST00000215936 Ubl7 protein_coding Interval_130133 chr5 124461773 124463143 + 0 NA TTS (ENSMUSG00000029401.8) protein_coding-TTS (ENSMUSG00000029401.8) -9969 ENSMUSG00000082402.1 ENSMUSG00000082402 ENSMUST00000119162 Gm15621 processed_pseudogene Interval_141113 chr6 125067443 125068414 + 0 NA promoter-TSS (ENSMUSG00000067714.13) protein_coding-promoter-TSS (ENSMUSG00000067714.13) -3349 ENSMUSG00000067714.13 ENSMUSG00000067714 ENSMUST00000171989 Lpar5 protein_coding Interval_28644 chr11 77507829 77508936 + 0 NA TTS (ENSMUSG00000011877.13) protein_coding-TTS (ENSMUSG00000011877.13) 7598 ENSMUSG00000044328.13 ENSMUSG00000044328 ENSMUST00000139195 Trp53i13 protein_coding Interval_36424 chr12 44327885 44330598 + 0 NA promoter-TSS (ENSMUSG00000020598.16) protein_coding-promoter-TSS (ENSMUSG00000020598.16) 307 ENSMUSG00000020598.16 ENSMUSG00000020598 ENSMUST00000218062 Nrcam protein_coding Interval_86859 chr19 44418739 44419617 + 0 NA promoter-TSS (ENSMUSG00000118076.1) lincRNA-promoter-TSS (ENSMUSG00000118076.1) -432 ENSMUSG00000118076.1 ENSMUSG00000118076 ENSMUST00000237516 Gm50337 lincRNA Interval_62814 chr15 97170641 97171017 + 0 NA Intergenic Intergenic -3585 ENSMUSG00000116295.1 ENSMUSG00000116295 ENSMUST00000229491 Gm32885 lincRNA Interval_159396 chr8 94302869 94303659 + 0 NA intron (ENSMUSG00000032939.14, intron 4 of 4) protein_coding-intron (ENSMUSG00000032939.14, intron 10 of 21) 7257 ENSMUSG00000032939.14 ENSMUSG00000032939 ENSMUST00000212984 Nup93 protein_coding Interval_100487 chr2 169515237 169516395 + 0 NA Intergenic Intergenic 35199 ENSMUSG00000087074.1 ENSMUSG00000087074 ENSMUST00000156239 Gm14249 lincRNA Interval_82695 chr18 76015918 76016158 + 0 NA promoter-TSS (ENSMUSG00000118311.1) antisense-promoter-TSS (ENSMUSG00000118311.1) -361 ENSMUSG00000118311.1 ENSMUSG00000118311 ENSMUST00000238127 1700003O11Rik antisense Interval_75226 chr17 64915016 64915408 + 0 NA Intergenic Intergenic 29640 ENSMUSG00000077691.1 ENSMUSG00000077691 ENSMUST00000104503 Gm25344 snoRNA Interval_151703 chr7 126167147 126167768 + 0 NA TTS (ENSMUSG00000090559.1) transcribed_processed_pseudogene-TTS (ENSMUSG00000090559.1) 1812 ENSMUSG00000090559.1 ENSMUSG00000090559 ENSMUST00000165729 Gm17137 transcribed_processed_pseudogene Interval_163462 chr9 21554903 21556150 + 0 NA intron (ENSMUSG00000032185.15, intron 1 of 13) protein_coding-intron (ENSMUSG00000032185.15, intron 1 of 15) -21541 ENSMUSG00000092261.1 ENSMUSG00000092261 ENSMUST00000173684 Gm20519 processed_pseudogene Interval_47028 chr13 74474663 74475344 + 0 NA intron (ENSMUSG00000116765.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000116765.1, intron 1 of 1) 360 ENSMUSG00000116765.1 ENSMUSG00000116765 ENSMUST00000231729 Gm49762 lincRNA Interval_150613 chr7 112810818 112811526 + 0 NA intron (ENSMUSG00000055320.18, intron 2 of 13) protein_coding-intron (ENSMUSG00000055320.18, intron 2 of 13) 97221 ENSMUSG00000106046.1 ENSMUSG00000106046 ENSMUST00000199696 Gm44462 miRNA Interval_92548 chr2 60514521 60515023 + 0 NA intron (ENSMUSG00000054580.14, intron 6 of 12) protein_coding-intron (ENSMUSG00000054580.14, intron 6 of 29) -35987 ENSMUSG00000086578.2 ENSMUSG00000086578 ENSMUST00000126361 Gm13583 antisense Interval_24101 chr11 30242318 30244021 + 0 NA intron (ENSMUSG00000020315.18, intron 1 of 1) protein_coding-intron (ENSMUSG00000020315.18, intron 1 of 35) -24295 ENSMUSG00000073073.4 ENSMUSG00000073073 ENSMUST00000146985 Gm8098 processed_transcript Interval_99880 chr2 165531283 165531539 + 0 NA Intergenic Intergenic 22630 ENSMUSG00000027661.4 ENSMUSG00000027661 ENSMUST00000148463 Slc2a10 protein_coding Interval_115668 chr4 101888982 101889849 + 0 NA TTS (ENSMUSG00000046133.3) protein_coding-TTS (ENSMUSG00000046133.3) 4374 ENSMUSG00000046133.3 ENSMUSG00000046133 ENSMUST00000051043 C130073F10Rik protein_coding Interval_12634 chr10 4047007 4048460 + 0 NA intron (ENSMUSG00000040675.17, intron 4 of 6) protein_coding-intron (ENSMUSG00000040675.17, intron 17 of 27) 15453 ENSMUSG00000040675.17 ENSMUSG00000040675 ENSMUST00000154517 Mthfd1l protein_coding Interval_160384 chr8 108868488 108868867 + 0 NA exon (ENSMUSG00000102989.1, exon 1 of 1) TEC-exon (ENSMUSG00000102989.1, exon 1 of 1) 1115 ENSMUSG00000102989.1 ENSMUSG00000102989 ENSMUST00000195769 Gm38318 TEC Interval_145084 chr7 29941116 29941735 + 0 NA intron (ENSMUSG00000059975.15, intron 1 of 1) protein_coding-intron (ENSMUSG00000059975.15, intron 1 of 3) 12664 ENSMUSG00000059975.15 ENSMUSG00000059975 ENSMUST00000149793 Zfp74 protein_coding Interval_151779 chr7 126604081 126604352 + 0 NA Intergenic Intergenic -9275 ENSMUSG00000044701.5 ENSMUSG00000044701 ENSMUST00000058429 Il27 protein_coding Interval_98716 chr2 154474699 154475144 + 0 NA intron (ENSMUSG00000038533.15, intron 1 of 2) protein_coding-intron (ENSMUSG00000038533.15, intron 1 of 10) 38079 ENSMUSG00000038533.15 ENSMUSG00000038533 ENSMUST00000139506 Cbfa2t2 protein_coding Interval_6056 chr1 95260696 95261161 + 0 NA Intergenic Intergenic -4118 ENSMUSG00000099592.1 ENSMUSG00000099592 ENSMUST00000190584 Gm5264 processed_pseudogene Interval_96557 chr2 125672422 125673709 + 0 NA promoter-TSS (ENSMUSG00000091337.3) protein_coding-promoter-TSS (ENSMUSG00000091337.3) -30 ENSMUSG00000091337.3 ENSMUSG00000091337 ENSMUST00000164756 Eid1 protein_coding Interval_170802 chr9 110863963 110865320 + 0 NA TTS (ENSMUSG00000048752.7) protein_coding-TTS (ENSMUSG00000048752.7) 3275 ENSMUSG00000048752.7 ENSMUSG00000048752 ENSMUST00000196027 Prss50 protein_coding Interval_96594 chr2 126033186 126033626 + 0 NA intron (ENSMUSG00000027209.17, intron 10 of 15) protein_coding-intron (ENSMUSG00000027209.17, intron 11 of 16) -1252 ENSMUSG00000027208.14 ENSMUSG00000027208 ENSMUST00000110442 Fgf7 protein_coding Interval_26185 chr11 54955683 54956545 + 0 NA promoter-TSS (ENSMUSG00000020400.17) protein_coding-promoter-TSS (ENSMUSG00000020400.17) -67 ENSMUSG00000020400.17 ENSMUSG00000020400 ENSMUST00000132776 Tnip1 protein_coding Interval_12994 chr10 8973921 8974150 + 0 NA Intergenic Intergenic 22086 ENSMUSG00000111674.1 ENSMUSG00000111674 ENSMUST00000213841 Gm48728 lincRNA Interval_116285 chr4 109285916 109286240 + 0 NA intron (ENSMUSG00000028552.13, intron 1 of 5) protein_coding-intron (ENSMUSG00000028552.13, intron 1 of 24) 41496 ENSMUSG00000028558.14 ENSMUSG00000028558 ENSMUST00000141555 Calr4 protein_coding Interval_49461 chr13 112226497 112226701 + 0 NA Intergenic Intergenic 7406 ENSMUSG00000104438.1 ENSMUSG00000104438 ENSMUST00000192356 Gm37427 TEC Interval_78788 chr18 20633385 20633763 + 0 NA intron (ENSMUSG00000085595.1, intron 1 of 2) antisense-intron (ENSMUSG00000085595.1, intron 1 of 2) 31686 ENSMUSG00000085595.1 ENSMUSG00000085595 ENSMUST00000130296 Gm16090 antisense Interval_21364 chr10 128175731 128176681 + 0 NA intron (ENSMUSG00000040043.17, intron 2 of 14) protein_coding-intron (ENSMUSG00000040043.17, intron 1 of 12) 4091 ENSMUSG00000040043.17 ENSMUSG00000040043 ENSMUST00000218884 Rbms2 protein_coding Interval_69952 chr17 3460101 3461387 + 0 NA intron (ENSMUSG00000023800.15, intron 1 of 3) protein_coding-intron (ENSMUSG00000023800.15, intron 14 of 26) 1588 ENSMUSG00000115039.1 ENSMUSG00000115039 ENSMUST00000228135 Gm7043 processed_pseudogene Interval_73532 chr17 39652128 39652633 + 0 NA Intergenic Intergenic 11426 ENSMUSG00000095104.2 ENSMUSG00000095104 ENSMUST00000178929 Esp15 protein_coding Interval_28905 chr11 79183211 79184680 + 0 NA Intergenic Intergenic -28851 ENSMUSG00000081000.1 ENSMUSG00000081000 ENSMUST00000121698 Gm11200 processed_pseudogene Interval_72092 chr17 27993983 27995066 + 0 NA intron (ENSMUSG00000024219.16, intron 9 of 23) protein_coding-intron (ENSMUSG00000024219.16, intron 10 of 24) 7838 ENSMUSG00000117263.1 ENSMUSG00000117263 ENSMUST00000233367 Gm35290 antisense Interval_1644 chr1 30756791 30757577 + 0 NA Intergenic Intergenic -12503 ENSMUSG00000100261.1 ENSMUSG00000100261 ENSMUST00000188572 Gm6473 unprocessed_pseudogene Interval_5811 chr1 92086337 92086621 + 0 NA intron (ENSMUSG00000026313.16, intron 3 of 4) protein_coding-intron (ENSMUSG00000026313.16, intron 1 of 25) -64382 ENSMUSG00000102565.1 ENSMUSG00000102565 ENSMUST00000192836 Gm37036 TEC Interval_87229 chr19 47067320 47068710 + 0 NA exon (ENSMUSG00000025049.6, exon 1 of 11) protein_coding-exon (ENSMUSG00000025049.6, exon 1 of 11) 269 ENSMUSG00000025049.6 ENSMUSG00000025049 ENSMUST00000026027 Taf5 protein_coding Interval_43845 chr13 37541890 37542192 + 0 NA promoter-TSS (ENSMUSG00000114665.1) lincRNA-promoter-TSS (ENSMUSG00000114665.1) -5737 ENSMUSG00000114665.1 ENSMUSG00000114665 ENSMUST00000225390 Lncbate6 lincRNA Interval_84032 chr19 6855021 6856821 + 0 NA promoter-TSS (ENSMUSG00000047810.9) protein_coding-promoter-TSS (ENSMUSG00000047810.9) -7568 ENSMUSG00000047810.9 ENSMUSG00000047810 ENSMUST00000237252 Ccdc88b protein_coding Interval_43924 chr13 38077003 38077430 + 0 NA Intergenic Intergenic -8986 ENSMUSG00000098481.1 ENSMUSG00000098481 ENSMUST00000184583 Gm27387 miRNA Interval_64999 chr16 17776593 17777420 + 0 NA exon (ENSMUSG00000022750.18, exon 4 of 7) protein_coding-exon (ENSMUSG00000022750.18, exon 4 of 7) 17329 ENSMUSG00000022750.18 ENSMUSG00000022750 ENSMUST00000140306 Klhl22 protein_coding Interval_95306 chr2 106027512 106027908 + 0 NA intron (ENSMUSG00000074981.13, intron 2 of 8) transcribed_unitary_pseudogene-intron (ENSMUSG00000074981.13, intron 2 of 8) 12510 ENSMUSG00000083425.1 ENSMUSG00000083425 ENSMUST00000120558 Gm13992 processed_pseudogene Interval_173042 chrX 67405503 67405859 + 0 NA Intergenic Intergenic -52515 ENSMUSG00000086185.1 ENSMUSG00000086185 ENSMUST00000136834 1700036O09Rik lincRNA Interval_156805 chr8 60621477 60622399 + 0 NA intron (ENSMUSG00000109930.1, intron 1 of 2) bidirectional_promoter_lncRNA-intron (ENSMUSG00000109930.1, intron 1 of 2) 10793 ENSMUSG00000109930.1 ENSMUSG00000109930 ENSMUST00000210674 Gm34730 bidirectional_promoter_lncRNA Interval_41474 chr12 114785623 114785876 + 0 NA Intergenic Intergenic 3056 ENSMUSG00000094546.1 ENSMUSG00000094546 ENSMUST00000103510 Ighv1-26 IG_V_gene Interval_130218 chr5 125023970 125024291 + 0 NA promoter-TSS (ENSMUSG00000029478.16) protein_coding-promoter-TSS (ENSMUSG00000029478.16) 931 ENSMUSG00000029478.16 ENSMUSG00000029478 ENSMUST00000199561 Ncor2 protein_coding Interval_133147 chr5 150174718 150175105 + 0 NA intron (ENSMUSG00000056602.12, intron 1 of 6) protein_coding-intron (ENSMUSG00000056602.12, intron 1 of 4) -68952 ENSMUSG00000107082.1 ENSMUSG00000107082 ENSMUST00000201709 Gm36378 processed_pseudogene Interval_164367 chr9 36273962 36274182 + 0 NA Intergenic Intergenic -15749 ENSMUSG00000066767.6 ENSMUSG00000066767 ENSMUST00000086108 Gm3867 transcribed_processed_pseudogene Interval_155209 chr8 27576657 27576907 + 0 NA intron (ENSMUSG00000110333.1, intron 50 of 65) protein_coding-intron (ENSMUSG00000110333.1, intron 51 of 69) -27595 ENSMUSG00000074404.6 ENSMUSG00000074404 ENSMUST00000211230 Gm1698 lincRNA Interval_81889 chr18 65632589 65633001 + 0 NA intron (ENSMUSG00000042439.13, intron 1 of 1) protein_coding-intron (ENSMUSG00000042439.13, intron 3 of 5) -1998 ENSMUSG00000117775.1 ENSMUSG00000117775 ENSMUST00000237947 Gm50462 sense_intronic Interval_76090 chr17 74855280 74855466 + 0 NA intron (ENSMUSG00000117441.1, intron 1 of 1) protein_coding-intron (ENSMUSG00000024078.7, intron 16 of 19) 5561 ENSMUSG00000117441.1 ENSMUSG00000117441 ENSMUST00000234097 Gm50021 antisense Interval_160978 chr8 116623589 116623859 + 0 NA intron (ENSMUSG00000031758.10, intron 2 of 6) protein_coding-intron (ENSMUSG00000031758.10, intron 2 of 6) 109267 ENSMUSG00000031758.10 ENSMUSG00000031758 ENSMUST00000109102 Cdyl2 protein_coding Interval_147253 chr7 65141160 65141533 + 0 NA intron (ENSMUSG00000030518.17, intron 1 of 3) protein_coding-intron (ENSMUSG00000030518.17, intron 1 of 9) -29296 ENSMUSG00000108745.1 ENSMUSG00000108745 ENSMUST00000205552 Gm17908 processed_pseudogene Interval_44959 chr13 50949449 50950233 + 0 NA Intergenic Intergenic -64245 ENSMUSG00000084609.2 ENSMUSG00000084609 ENSMUST00000122660 Gm22199 misc_RNA Interval_159810 chr8 103948500 103949605 + 0 NA Intergenic Intergenic -122097 ENSMUSG00000110019.1 ENSMUSG00000110019 ENSMUST00000211125 Gm8748 processed_pseudogene Interval_33429 chr11 116498580 116498953 + 0 NA Intergenic Intergenic -5770 ENSMUSG00000081318.1 ENSMUSG00000081318 ENSMUST00000119508 Rpl36-ps1 processed_pseudogene Interval_162937 chr9 13583220 13583486 + 0 NA intron (ENSMUSG00000031925.17, intron 1 of 4) protein_coding-intron (ENSMUSG00000031925.17, intron 1 of 4) -37873 ENSMUSG00000093092.1 ENSMUSG00000093092 ENSMUST00000175351 Gm22643 miRNA Interval_64532 chr16 13130101 13130892 + 0 NA exon (ENSMUSG00000022545.13, exon 8 of 11) protein_coding-exon (ENSMUSG00000022545.13, exon 8 of 11) -1895 ENSMUSG00000022545.13 ENSMUSG00000022545 ENSMUST00000156393 Ercc4 protein_coding Interval_9824 chr1 162697643 162697840 + 0 NA exon (ENSMUSG00000040225.15, exon 19 of 35) protein_coding-exon (ENSMUSG00000040225.15, exon 19 of 35) -23521 ENSMUSG00000098259.1 ENSMUSG00000098259 ENSMUST00000184547 Gm27616 miRNA Interval_95234 chr2 105074256 105074649 + 0 NA Intergenic Intergenic -17566 ENSMUSG00000079175.1 ENSMUSG00000079175 ENSMUST00000111107 Gm11060 protein_coding Interval_44630 chr13 46809717 46810956 + 0 NA intron (ENSMUSG00000021375.11, intron 14 of 25) protein_coding-intron (ENSMUSG00000021375.11, intron 14 of 37) -1279 ENSMUSG00000021375.11 ENSMUSG00000021375 ENSMUST00000224923 Kif13a protein_coding Interval_138427 chr6 88113030 88113691 + 0 NA Intergenic Intergenic -9102 ENSMUSG00000099095.1 ENSMUSG00000099095 ENSMUST00000185149 Mir6376 miRNA Interval_133542 chr6 6279392 6280222 + 0 NA intron (ENSMUSG00000093482.8, intron 1 of 4) lincRNA-intron (ENSMUSG00000093482.8, intron 1 of 3) 31148 ENSMUSG00000093482.8 ENSMUSG00000093482 ENSMUST00000181343 Gm20619 lincRNA Interval_55125 chr14 78356383 78356818 + 0 NA Intergenic Intergenic -45260 ENSMUSG00000092774.1 ENSMUSG00000092774 ENSMUST00000175033 Gm26197 rRNA Interval_86249 chr19 38067433 38068250 + 0 NA intron (ENSMUSG00000024989.15, intron 5 of 9) protein_coding-intron (ENSMUSG00000024989.15, intron 4 of 8) -4088 ENSMUSG00000064646.1 ENSMUSG00000064646 ENSMUST00000082712 Gm23300 snoRNA Interval_743 chr1 10397989 10398306 + 0 NA intron (ENSMUSG00000042501.12, intron 7 of 9) protein_coding-intron (ENSMUSG00000042501.12, intron 8 of 10) 53842 ENSMUSG00000103810.1 ENSMUSG00000103810 ENSMUST00000194845 Gm38005 TEC Interval_54977 chr14 76622776 76625816 + 0 NA Intergenic Intergenic 12568 ENSMUSG00000115143.1 ENSMUSG00000115143 ENSMUST00000227724 Fkbp1a-ps1 processed_pseudogene Interval_143621 chr7 13288044 13289222 + 0 NA intron (ENSMUSG00000056394.17, intron 5 of 10) protein_coding-intron (ENSMUSG00000056394.17, intron 5 of 28) 9778 ENSMUSG00000056394.17 ENSMUSG00000056394 ENSMUST00000131294 Lig1 protein_coding Interval_36091 chr12 35528028 35528314 + 0 NA intron (ENSMUSG00000019256.17, intron 1 of 10) protein_coding-intron (ENSMUSG00000019256.17, intron 1 of 8) -1392 ENSMUSG00000019256.17 ENSMUSG00000019256 ENSMUST00000173414 Ahr protein_coding Interval_95640 chr2 113305048 113305916 + 0 NA Intergenic Intergenic 17209 ENSMUSG00000093660.1 ENSMUSG00000093660 ENSMUST00000176208 Gm26505 snRNA Interval_114487 chr4 81022045 81022327 + 0 NA Intergenic Intergenic 54742 ENSMUSG00000099273.1 ENSMUSG00000099273 ENSMUST00000184920 Gm27452 miRNA Interval_131847 chr5 140342080 140342391 + 0 NA intron (ENSMUSG00000029560.12, intron 9 of 9) protein_coding-intron (ENSMUSG00000029560.12, intron 10 of 10) -10337 ENSMUSG00000029557.7 ENSMUSG00000029557 ENSMUST00000031536 Mrm2 protein_coding Interval_147325 chr7 65861448 65864405 + 0 NA promoter-TSS (ENSMUSG00000093405.1) bidirectional_promoter_lncRNA-promoter-TSS (ENSMUSG00000093405.1) -934 ENSMUSG00000093405.1 ENSMUSG00000093405 ENSMUST00000176744 Gm20684 bidirectional_promoter_lncRNA Interval_65842 chr16 29734421 29736076 + 0 NA Intergenic Intergenic 19064 ENSMUSG00000116814.1 ENSMUSG00000116814 ENSMUST00000232037 Gm49636 lincRNA Interval_20280 chr10 116638038 116639571 + 0 NA promoter-TSS (ENSMUSG00000112436.1) processed_pseudogene-promoter-TSS (ENSMUSG00000112436.1) -488 ENSMUSG00000112436.1 ENSMUSG00000112436 ENSMUST00000218860 Gm48403 processed_pseudogene Interval_98411 chr2 152160809 152161634 + 0 NA Intergenic Intergenic 17660 ENSMUSG00000068079.5 ENSMUSG00000068079 ENSMUST00000089112 Tcf15 protein_coding Interval_14616 chr10 37021942 37022913 + 0 NA Intergenic Intergenic 30661 ENSMUSG00000019777.16 ENSMUSG00000019777 ENSMUST00000123010 Hdac2 protein_coding Interval_90476 chr2 30692636 30694057 + 0 NA Intergenic Intergenic -23438 ENSMUSG00000087268.1 ENSMUSG00000087268 ENSMUST00000144704 Gm14486 lincRNA Interval_59588 chr15 55654849 55655601 + 0 NA intron (ENSMUSG00000060429.12, intron 4 of 6) protein_coding-intron (ENSMUSG00000060429.12, intron 4 of 6) 37638 ENSMUSG00000022369.13 ENSMUSG00000022369 ENSMUST00000166449 Mtbp protein_coding Interval_48812 chr13 103591297 103592521 + 0 NA exon (ENSMUSG00000114206.1, exon 4 of 4) lincRNA-exon (ENSMUSG00000114206.1, exon 4 of 4) -50017 ENSMUSG00000096642.1 ENSMUSG00000096642 ENSMUST00000179897 Gm24870 snRNA Interval_90886 chr2 33215505 33216822 + 0 NA promoter-TSS (ENSMUSG00000004105.8) protein_coding-promoter-TSS (ENSMUSG00000004105.8) 46 ENSMUSG00000004105.8 ENSMUSG00000004105 ENSMUST00000193373 Angptl2 protein_coding Interval_66517 chr16 34698281 34698589 + 0 NA intron (ENSMUSG00000022833.7, intron 5 of 8) protein_coding-intron (ENSMUSG00000022833.7, intron 5 of 12) 7725 ENSMUSG00000022833.7 ENSMUSG00000022833 ENSMUST00000232341 Ccdc14 protein_coding Interval_146591 chr7 47108909 47109136 + 0 NA intron (ENSMUSG00000030854.17, intron 2 of 12) protein_coding-intron (ENSMUSG00000030854.17, intron 2 of 13) -1829 ENSMUSG00000109501.1 ENSMUSG00000109501 ENSMUST00000207045 Gm14377 antisense Interval_93706 chr2 76006013 76006844 + 0 NA promoter-TSS (ENSMUSG00000075270.11) protein_coding-promoter-TSS (ENSMUSG00000075270.11) -24461 ENSMUSG00000075271.4 ENSMUSG00000075271 ENSMUST00000099994 Ttc30a1 protein_coding Interval_58145 chr15 29408111 29408301 + 0 NA Intergenic Intergenic 305198 ENSMUSG00000092639.1 ENSMUSG00000092639 ENSMUST00000174898 Mir3964 miRNA Interval_61327 chr15 80869439 80869808 + 0 NA intron (ENSMUSG00000047888.10, intron 3 of 17) protein_coding-intron (ENSMUSG00000047888.10, intron 6 of 24) -53441 ENSMUSG00000047888.10 ENSMUSG00000047888 ENSMUST00000228525 Tnrc6b protein_coding Interval_74447 chr17 50689824 50690056 + 0 NA Intergenic Intergenic -8748 ENSMUSG00000044645.8 ENSMUSG00000044645 ENSMUST00000061681 Gm7334 processed_pseudogene Interval_21488 chr10 128873192 128873534 + 0 NA intron (ENSMUSG00000078427.3, intron 11 of 11) protein_coding-intron (ENSMUSG00000078427.3, intron 10 of 10) 18355 ENSMUSG00000025352.6 ENSMUSG00000025352 ENSMUST00000026408 Gdf11 protein_coding Interval_65140 chr16 20119132 20119437 + 0 NA intron (ENSMUSG00000062901.3, intron 6 of 7) protein_coding-intron (ENSMUSG00000062901.3, intron 6 of 7) 21699 ENSMUSG00000062901.3 ENSMUSG00000062901 ENSMUST00000231842 Klhl24 protein_coding Interval_157568 chr8 71468927 71469677 + 0 NA promoter-TSS (ENSMUSG00000074247.10) protein_coding-promoter-TSS (ENSMUSG00000074247.10) 17 ENSMUSG00000074247.10 ENSMUSG00000074247 ENSMUST00000146677 Dda1 protein_coding Interval_33514 chr11 116980485 116981077 + 0 NA intron (ENSMUSG00000043857.16, intron 4 of 6) protein_coding-intron (ENSMUSG00000043857.16, intron 15 of 17) 33446 ENSMUSG00000043857.16 ENSMUSG00000043857 ENSMUST00000126757 Mgat5b protein_coding Interval_117943 chr4 127227033 127228017 + 0 NA intron (ENSMUSG00000042388.14, intron 8 of 11) protein_coding-intron (ENSMUSG00000042388.14, intron 8 of 11) -16259 ENSMUSG00000042380.8 ENSMUSG00000042380 ENSMUST00000142029 Smim12 protein_coding Interval_27149 chr11 63383383 63384144 + 0 NA Intergenic Intergenic -29406 ENSMUSG00000085113.1 ENSMUSG00000085113 ENSMUST00000151765 B130011K05Rik lincRNA Interval_104903 chr3 78901070 78901539 + 0 NA Intergenic Intergenic -8882 ENSMUSG00000091361.2 ENSMUSG00000091361 ENSMUST00000164923 Gm5277 processed_pseudogene Interval_120842 chr4 150966721 150967178 + 0 NA intron (ENSMUSG00000014592.21, intron 24 of 24) protein_coding-intron (ENSMUSG00000014592.21, intron 24 of 24) 2214 ENSMUSG00000064476.1 ENSMUSG00000064476 ENSMUST00000082542 Gm23405 snRNA Interval_62734 chr15 96536510 96537164 + 0 NA Intergenic Intergenic 38935 ENSMUSG00000116160.1 ENSMUSG00000116160 ENSMUST00000229356 Gm41392 lincRNA Interval_102455 chr3 26821643 26822119 + 0 NA intron (ENSMUSG00000039335.11, intron 4 of 9) protein_coding-intron (ENSMUSG00000039335.11, intron 4 of 10) 184231 ENSMUSG00000039335.11 ENSMUSG00000039335 ENSMUST00000108305 Spata16 protein_coding Interval_66878 chr16 38277380 38277792 + 0 NA intron (ENSMUSG00000022809.4, intron 1 of 8) protein_coding-intron (ENSMUSG00000022809.4, intron 1 of 8) 17238 ENSMUSG00000022809.4 ENSMUSG00000022809 ENSMUST00000023504 Nr1i2 protein_coding Interval_108105 chr3 121530410 121531061 + 0 NA promoter-TSS (ENSMUSG00000097124.2) antisense-promoter-TSS (ENSMUSG00000097124.2) -894 ENSMUSG00000097124.2 ENSMUSG00000097124 ENSMUST00000180804 A530020G20Rik antisense Interval_37357 chr12 65436167 65436365 + 0 NA Intergenic Intergenic -30296 ENSMUSG00000077590.1 ENSMUSG00000077590 ENSMUST00000104402 Gm26015 snoRNA Interval_149191 chr7 96159097 96159723 + 0 NA Intergenic Intergenic 44126 ENSMUSG00000108528.1 ENSMUSG00000108528 ENSMUST00000205708 Gm8319 processed_pseudogene Interval_49628 chr13 113639029 113639283 + 0 NA Intergenic Intergenic 24520 ENSMUSG00000051456.4 ENSMUSG00000051456 ENSMUST00000054650 Hspb3 protein_coding Interval_33971 chr11 119752298 119752615 + 0 NA intron (ENSMUSG00000025583.15, intron 5 of 32) protein_coding-intron (ENSMUSG00000025583.15, intron 5 of 33) 6055 ENSMUSG00000088670.1 ENSMUSG00000088670 ENSMUST00000158045 Gm23663 snoRNA Interval_134834 chr6 31978448 31978837 + 0 NA Intergenic Intergenic -71604 ENSMUSG00000029766.7 ENSMUSG00000029766 ENSMUST00000156267 1700012A03Rik protein_coding Interval_19524 chr10 102083311 102083540 + 0 NA intron (ENSMUSG00000019888.16, intron 4 of 8) protein_coding-intron (ENSMUSG00000019888.16, intron 3 of 5) -75480 ENSMUSG00000019888.16 ENSMUSG00000019888 ENSMUST00000120748 Mgat4c protein_coding Interval_24177 chr11 30953117 30954971 + 0 NA promoter-TSS (ENSMUSG00000020305.13) protein_coding-promoter-TSS (ENSMUSG00000020305.13) -5842 ENSMUSG00000020311.17 ENSMUSG00000020311 ENSMUST00000152770 Erlec1 protein_coding Interval_147473 chr7 67583977 67584641 + 0 NA intron (ENSMUSG00000030556.13, intron 5 of 9) protein_coding-intron (ENSMUSG00000030556.13, intron 5 of 9) -9350 ENSMUSG00000109342.1 ENSMUSG00000109342 ENSMUST00000208500 Gm32983 processed_pseudogene Interval_78019 chr18 6773379 6774784 + 0 NA intron (ENSMUSG00000073639.6, intron 2 of 6) protein_coding-intron (ENSMUSG00000073639.6, intron 2 of 5) 8936 ENSMUSG00000073639.6 ENSMUSG00000073639 ENSMUST00000097680 Rab18 protein_coding Interval_10346 chr1 169776686 169777483 + 0 NA Intergenic Intergenic 22472 ENSMUSG00000096772.1 ENSMUSG00000096772 ENSMUST00000177756 Gm22114 snRNA Interval_77870 chr18 4891599 4892221 + 0 NA Intergenic Intergenic 79424 ENSMUSG00000097043.1 ENSMUSG00000097043 ENSMUST00000180904 Gm10556 lincRNA Interval_64484 chr16 11983202 11985164 + 0 NA promoter-TSS (ENSMUSG00000022494.15) protein_coding-promoter-TSS (ENSMUSG00000022494.15) -275 ENSMUSG00000022494.15 ENSMUSG00000022494 ENSMUST00000229804 Shisa9 protein_coding Interval_113795 chr4 58669278 58669502 + 0 NA Intergenic Intergenic -10798 ENSMUSG00000086470.1 ENSMUSG00000086470 ENSMUST00000127456 Gm12580 lincRNA Interval_158881 chr8 87679542 87679741 + 0 NA intron (ENSMUSG00000045333.15, intron 5 of 5) protein_coding-intron (ENSMUSG00000045333.15, intron 6 of 6) 42984 ENSMUSG00000089301.1 ENSMUSG00000089301 ENSMUST00000158676 Gm24841 misc_RNA Interval_80011 chr18 36615807 36616017 + 0 NA intron (ENSMUSG00000024483.19, intron 5 of 8) protein_coding-intron (ENSMUSG00000024483.19, intron 14 of 33) 1600 ENSMUSG00000024483.19 ENSMUSG00000024483 ENSMUST00000116653 Ankhd1 protein_coding Interval_20829 chr10 121364508 121366092 + 0 NA exon (ENSMUSG00000034707.7, exon 1 of 14) protein_coding-exon (ENSMUSG00000034707.7, exon 1 of 14) -11774 ENSMUSG00000034707.7 ENSMUSG00000034707 ENSMUST00000219216 Gns protein_coding Interval_91766 chr2 49376386 49376634 + 0 NA Intergenic Intergenic 22005 ENSMUSG00000077769.1 ENSMUSG00000077769 ENSMUST00000104581 Gm25215 snoRNA Interval_158670 chr8 85059583 85061306 + 0 NA promoter-TSS (ENSMUSG00000087026.7) processed_transcript-promoter-TSS (ENSMUSG00000087026.7) -1 ENSMUSG00000087026.7 ENSMUSG00000087026 ENSMUST00000156084 A230103J11Rik processed_transcript Interval_51056 chr14 21847159 21849242 + 0 NA promoter-TSS (ENSMUSG00000021773.11) protein_coding-promoter-TSS (ENSMUSG00000021773.11) 487 ENSMUSG00000021773.11 ENSMUSG00000021773 ENSMUST00000177527 Comtd1 protein_coding Interval_17208 chr10 74995164 74995953 + 0 NA intron (ENSMUSG00000040009.6, intron 1 of 1) protein_coding-intron (ENSMUSG00000009070.14, intron 4 of 6) 28349 ENSMUSG00000040009.6 ENSMUSG00000040009 ENSMUST00000159991 Gnaz protein_coding Interval_13026 chr10 9625063 9626227 + 0 NA exon (ENSMUSG00000060487.7, exon 2 of 2) protein_coding-exon (ENSMUSG00000060487.7, exon 2 of 2) 5296 ENSMUSG00000060487.7 ENSMUSG00000060487 ENSMUST00000221079 Samd5 protein_coding Interval_160108 chr8 106501839 106502060 + 0 NA intron (ENSMUSG00000054069.8, intron 1 of 2) lincRNA-intron (ENSMUSG00000054069.8, intron 1 of 2) 1444 ENSMUSG00000054069.8 ENSMUSG00000054069 ENSMUST00000066875 6030452D12Rik lincRNA Interval_26693 chr11 59757693 59758013 + 0 NA exon (ENSMUSG00000005417.17, exon 15 of 23) protein_coding-exon (ENSMUSG00000005417.17, exon 15 of 23) -2895 ENSMUSG00000005417.17 ENSMUSG00000005417 ENSMUST00000156111 Mprip protein_coding Interval_160809 chr8 112571412 112571719 + 0 NA intron (ENSMUSG00000031772.17, intron 1 of 20) protein_coding-intron (ENSMUSG00000031772.17, intron 1 of 23) -1990 ENSMUSG00000098075.1 ENSMUSG00000098075 ENSMUST00000182027 Gm26994 antisense Interval_134030 chr6 17860850 17861057 + 0 NA intron (ENSMUSG00000029534.17, intron 6 of 7) protein_coding-intron (ENSMUSG00000029534.17, intron 8 of 14) 20397 ENSMUSG00000029534.17 ENSMUSG00000029534 ENSMUST00000127322 St7 protein_coding Interval_38872 chr12 83525522 83526454 + 0 NA promoter-TSS (ENSMUSG00000021222.9) protein_coding-promoter-TSS (ENSMUSG00000021222.9) -12 ENSMUSG00000021222.9 ENSMUSG00000021222 ENSMUST00000221944 Dcaf4 protein_coding Interval_108530 chr3 128044717 128045262 + 0 NA Intergenic Intergenic 6296 ENSMUSG00000074237.3 ENSMUSG00000074237 ENSMUST00000098625 Gm10650 TEC Interval_30888 chr11 97072656 97073698 + 0 NA Intergenic Intergenic 9409 ENSMUSG00000098769.1 ENSMUSG00000098769 ENSMUST00000183945 Mir8103 miRNA Interval_108786 chr3 131271023 131272531 + 0 NA intron (ENSMUSG00000027984.8, intron 1 of 2) protein_coding-intron (ENSMUSG00000027984.8, intron 1 of 7) 247 ENSMUSG00000027984.8 ENSMUSG00000027984 ENSMUST00000152427 Hadh protein_coding Interval_85154 chr19 23185564 23186375 + 0 NA Intergenic Intergenic 36538 ENSMUSG00000080626.1 ENSMUSG00000080626 ENSMUST00000116976 Mir1192 miRNA Interval_140689 chr6 120597796 120599018 + 0 NA Intergenic Intergenic -18231 ENSMUSG00000107580.1 ENSMUSG00000107580 ENSMUST00000204159 Gm44124 TEC Interval_140373 chr6 117574624 117575205 + 0 NA Intergenic Intergenic 7242 ENSMUSG00000054488.14 ENSMUSG00000054488 ENSMUST00000165995 Gm9946 lincRNA Interval_136217 chr6 52107630 52107878 + 0 NA intron (ENSMUSG00000085412.7, intron 2 of 2) lincRNA-intron (ENSMUSG00000085412.7, intron 2 of 2) 4760 ENSMUSG00000085412.7 ENSMUSG00000085412 ENSMUST00000155758 Halr1 lincRNA Interval_108566 chr3 129111955 129112250 + 0 NA Intergenic Intergenic -41558 ENSMUSG00000099640.1 ENSMUSG00000099640 ENSMUST00000188986 Gm28543 lincRNA Interval_80144 chr18 37840430 37842991 + 0 NA exon (ENSMUSG00000103088.1, exon 4 of 4) protein_coding-exon (ENSMUSG00000103088.1, exon 4 of 4) -11510 ENSMUSG00000102713.1 ENSMUSG00000102713 ENSMUST00000195495 Gm29994 antisense Interval_114712 chr4 84188979 84189745 + 0 NA Intergenic Intergenic -59073 ENSMUSG00000087378.1 ENSMUSG00000087378 ENSMUST00000150794 Gm12414 lincRNA Interval_130601 chr5 129116034 129116844 + 0 NA intron (ENSMUSG00000044017.16, intron 4 of 24) protein_coding-intron (ENSMUSG00000044017.16, intron 5 of 25) 12078 ENSMUSG00000060419.8 ENSMUSG00000060419 ENSMUST00000140155 Rps16-ps2 processed_pseudogene Interval_49344 chr13 111393411 111394085 + 0 NA Intergenic Intergenic -25068 ENSMUSG00000086201.1 ENSMUSG00000086201 ENSMUST00000132731 Gm6270 lincRNA Interval_140414 chr6 117944651 117945155 + 0 NA Intergenic Intergenic -8950 ENSMUSG00000004988.9 ENSMUSG00000004988 ENSMUST00000203842 Fxyd4 protein_coding Interval_37393 chr12 66347858 66348082 + 0 NA intron (ENSMUSG00000114093.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000114093.1, intron 1 of 2) 20415 ENSMUSG00000114093.1 ENSMUSG00000114093 ENSMUST00000221562 Gm47979 lincRNA Interval_172140 chrX 7926234 7928824 + 0 NA intron (ENSMUSG00000031160.4, intron 1 of 1) protein_coding-intron (ENSMUSG00000031160.4, intron 1 of 1) 1078 ENSMUSG00000031160.4 ENSMUSG00000031160 ENSMUST00000033500 Eras protein_coding Interval_10152 chr1 166134972 166135850 + 0 NA intron (ENSMUSG00000000544.14, intron 1 of 2) protein_coding-intron (ENSMUSG00000000544.14, intron 1 of 3) 4944 ENSMUSG00000000544.14 ENSMUSG00000000544 ENSMUST00000166860 Gpa33 protein_coding Interval_106611 chr3 97740808 97741441 + 0 NA exon (ENSMUSG00000038170.15, exon 17 of 17) protein_coding-exon (ENSMUSG00000038170.15, exon 17 of 17) 10595 ENSMUSG00000105245.1 ENSMUSG00000105245 ENSMUST00000200435 Gm31305 antisense Interval_144527 chr7 25704650 25706006 + 0 NA TTS (ENSMUSG00000002603.15) protein_coding-TTS (ENSMUSG00000002603.15) 13663 ENSMUSG00000002608.8 ENSMUSG00000002608 ENSMUST00000140847 Ccdc97 protein_coding Interval_133351 chr6 3573157 3574747 + 0 NA intron (ENSMUSG00000001376.17, intron 4 of 11) protein_coding-intron (ENSMUSG00000001376.17, intron 20 of 27) -9862 ENSMUSG00000107094.1 ENSMUSG00000107094 ENSMUST00000202850 Gm43294 TEC Interval_97122 chr2 131443133 131444306 + 0 NA Intergenic Intergenic 10921 ENSMUSG00000083671.1 ENSMUSG00000083671 ENSMUST00000117272 Gm14304 processed_pseudogene Interval_751 chr1 10618534 10618781 + 0 NA intron (ENSMUSG00000042501.12, intron 1 of 9) protein_coding-intron (ENSMUSG00000042501.12, intron 1 of 10) -62997 ENSMUSG00000094979.1 ENSMUSG00000094979 ENSMUST00000179958 Gm25253 snRNA Interval_150882 chr7 116161541 116162304 + 0 NA intron (ENSMUSG00000045659.18, intron 10 of 18) protein_coding-intron (ENSMUSG00000045659.18, intron 8 of 24) -32397 ENSMUSG00000045659.18 ENSMUSG00000045659 ENSMUST00000205446 Plekha7 protein_coding Interval_59642 chr15 57278845 57279578 + 0 NA intron (ENSMUSG00000022366.12, intron 2 of 11) protein_coding-intron (ENSMUSG00000022366.12, intron 2 of 11) -14074 ENSMUSG00000022366.12 ENSMUSG00000022366 ENSMUST00000137764 Slc22a22 protein_coding Interval_169070 chr9 91420458 91420748 + 0 NA intron (ENSMUSG00000100341.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000100341.1, intron 1 of 2) 16129 ENSMUSG00000100341.1 ENSMUSG00000100341 ENSMUST00000191272 Gm29478 lincRNA Interval_4220 chr1 71684502 71684877 + 0 NA Intergenic Intergenic 25366 ENSMUSG00000101834.1 ENSMUSG00000101834 ENSMUST00000191383 Gm5829 processed_pseudogene Interval_97526 chr2 138646522 138647534 + 0 NA intron (ENSMUSG00000085911.1, intron 4 of 4) lincRNA-intron (ENSMUSG00000085911.1, intron 4 of 4) 57636 ENSMUSG00000085911.1 ENSMUSG00000085911 ENSMUST00000155923 Gm14061 lincRNA Interval_159274 chr8 92712977 92714496 + 0 NA Intergenic Intergenic 3239 ENSMUSG00000078967.5 ENSMUSG00000078967 ENSMUST00000181181 Gapdh-ps16 processed_pseudogene Interval_141549 chr6 129113514 129114320 + 0 NA Intergenic Intergenic -2601 ENSMUSG00000079295.5 ENSMUSG00000079295 ENSMUST00000184388 Klrb1-ps1 transcribed_unprocessed_pseudogene Interval_46357 chr13 64178751 64179011 + 0 NA intron (ENSMUSG00000021476.9, intron 3 of 3) protein_coding-intron (ENSMUSG00000021476.9, intron 5 of 7) -5622 ENSMUSG00000021476.9 ENSMUSG00000021476 ENSMUST00000223377 Habp4 protein_coding Interval_71413 chr17 23603224 23606186 + 0 NA promoter-TSS (ENSMUSG00000023902.18) protein_coding-promoter-TSS (ENSMUSG00000023902.18) 3843 ENSMUSG00000023902.18 ENSMUSG00000023902 ENSMUST00000133749 Zscan10 protein_coding Interval_100897 chr2 173225742 173227064 + 0 NA exon (ENSMUSG00000038400.15, exon 4 of 4) protein_coding-exon (ENSMUSG00000038400.15, exon 4 of 4) -7506 ENSMUSG00000027514.14 ENSMUSG00000027514 ENSMUST00000109116 Zbp1 protein_coding Interval_122664 chr5 24542556 24543209 + 0 NA TTS (ENSMUSG00000038199.12) protein_coding-TTS (ENSMUSG00000038199.12) -2290 ENSMUSG00000038204.13 ENSMUSG00000038204 ENSMUST00000119657 Asb10 protein_coding Interval_138920 chr6 93543662 93544612 + 0 NA Intergenic Intergenic 34564 ENSMUSG00000088630.1 ENSMUSG00000088630 ENSMUST00000158005 Gm22312 snoRNA Interval_156490 chr8 48704810 48705072 + 0 NA intron (ENSMUSG00000031561.16, intron 1 of 2) protein_coding-intron (ENSMUSG00000031561.16, intron 1 of 2) -73772 ENSMUSG00000110509.1 ENSMUSG00000110509 ENSMUST00000212961 Gm45772 processed_pseudogene Interval_139267 chr6 97723952 97724173 + 0 NA Intergenic Intergenic -6377 ENSMUSG00000094510.1 ENSMUSG00000094510 ENSMUST00000180099 Gm24565 snRNA Interval_46061 chr13 60682986 60685475 + 0 NA intron (ENSMUSG00000021559.14, intron 2 of 26) protein_coding-intron (ENSMUSG00000021559.14, intron 2 of 26) 42440 ENSMUSG00000114277.1 ENSMUSG00000114277 ENSMUST00000225897 Gm48583 processed_pseudogene Interval_49546 chr13 112846082 112847056 + 0 NA intron (ENSMUSG00000021759.14, intron 2 of 5) protein_coding-intron (ENSMUSG00000021759.14, intron 2 of 5) -37657 ENSMUSG00000098067.1 ENSMUSG00000098067 ENSMUST00000182295 Gm26943 processed_pseudogene Interval_54365 chr14 67941108 67941987 + 0 NA Intergenic Intergenic -81802 ENSMUSG00000098866.1 ENSMUSG00000098866 ENSMUST00000183732 Mir6539 miRNA Interval_104739 chr3 69953156 69953607 + 0 NA Intergenic Intergenic 2301 ENSMUSG00000103549.1 ENSMUSG00000103549 ENSMUST00000194028 Gm17895 processed_pseudogene Interval_28149 chr11 73207517 73207932 + 0 NA intron (ENSMUSG00000005951.13, intron 3 of 7) protein_coding-intron (ENSMUSG00000005951.13, intron 2 of 6) 8264 ENSMUSG00000005951.13 ENSMUSG00000005951 ENSMUST00000006105 Shpk protein_coding Interval_64914 chr16 17167627 17167864 + 0 NA intron (ENSMUSG00000038965.17, intron 1 of 2) protein_coding-intron (ENSMUSG00000038965.17, intron 2 of 3) 20808 ENSMUSG00000041774.16 ENSMUSG00000041774 ENSMUST00000231539 Ydjc protein_coding Interval_143579 chr7 12949049 12950376 + 0 NA TTS (ENSMUSG00000097115.2) lincRNA-TTS (ENSMUSG00000097115.2) 354 ENSMUSG00000097115.2 ENSMUSG00000097115 ENSMUST00000191346 1810019N24Rik lincRNA Interval_164049 chr9 31151038 31151641 + 0 NA TTS (ENSMUSG00000031996.17) protein_coding-TTS (ENSMUSG00000031996.17) 9983 ENSMUSG00000031996.17 ENSMUSG00000031996 ENSMUST00000213273 Aplp2 protein_coding Interval_59113 chr15 44257907 44258726 + 0 NA Intergenic Intergenic -23664 ENSMUSG00000115730.1 ENSMUSG00000115730 ENSMUST00000226624 Gm7459 processed_pseudogene Interval_91498 chr2 39429844 39431618 + 0 NA Intergenic Intergenic 35318 ENSMUSG00000083401.1 ENSMUSG00000083401 ENSMUST00000120391 Gm13506 unprocessed_pseudogene Interval_12868 chr10 7075874 7077048 + 0 NA Intergenic Intergenic 37800 ENSMUSG00000081926.1 ENSMUSG00000081926 ENSMUST00000121411 Gm15536 processed_pseudogene Interval_124002 chr5 37097490 37098541 + 0 NA intron (ENSMUSG00000117286.1, intron 2 of 33) protein_coding-intron (ENSMUSG00000063646.18, intron 3 of 12) -5655 ENSMUSG00000088707.1 ENSMUSG00000088707 ENSMUST00000158082 Gm25551 rRNA Interval_65332 chr16 21624833 21625740 + 0 NA intron (ENSMUSG00000033653.18, intron 2 of 3) protein_coding-intron (ENSMUSG00000033653.18, intron 44 of 45) 69294 ENSMUSG00000043391.10 ENSMUSG00000043391 ENSMUST00000232634 2510009E07Rik protein_coding Interval_4323 chr1 72717136 72717381 + 0 NA Intergenic Intergenic 5944 ENSMUSG00000046330.10 ENSMUSG00000046330 ENSMUST00000211963 Rpl37a protein_coding Interval_16300 chr10 62058979 62059225 + 0 NA Intergenic Intergenic -12021 ENSMUSG00000046687.6 ENSMUSG00000046687 ENSMUST00000053865 Gm5424 processed_pseudogene Interval_158218 chr8 79954652 79955346 + 0 NA Intergenic Intergenic -15391 ENSMUSG00000098688.1 ENSMUSG00000098688 ENSMUST00000183628 Gm27820 misc_RNA Interval_163596 chr9 22411159 22411886 + 0 NA promoter-TSS (ENSMUSG00000036411.10) protein_coding-promoter-TSS (ENSMUSG00000036411.10) -117 ENSMUSG00000036411.10 ENSMUSG00000036411 ENSMUST00000213133 9530077C05Rik protein_coding Interval_144566 chr7 26071416 26072539 + 0 NA promoter-TSS (ENSMUSG00000101800.1) processed_pseudogene-promoter-TSS (ENSMUSG00000101800.1) -96 ENSMUSG00000101800.1 ENSMUSG00000101800 ENSMUST00000181188 Rnf170-ps processed_pseudogene Interval_55247 chr14 79617205 79617638 + 0 NA intron (ENSMUSG00000022024.10, intron 9 of 10) protein_coding-intron (ENSMUSG00000022024.10, intron 10 of 12) 28089 ENSMUSG00000022025.13 ENSMUSG00000022025 ENSMUST00000167524 Cnmd protein_coding Interval_38474 chr12 79285562 79286127 + 0 NA intron (ENSMUSG00000066440.5, intron 6 of 19) protein_coding-intron (ENSMUSG00000066440.5, intron 6 of 41) -41433 ENSMUSG00000066440.5 ENSMUSG00000066440 ENSMUST00000219571 Zfyve26 protein_coding Interval_28268 chr11 74787833 74788274 + 0 NA intron (ENSMUSG00000010554.14, intron 4 of 9) protein_coding-intron (ENSMUSG00000010554.14, intron 4 of 10) -15271 ENSMUSG00000010554.14 ENSMUSG00000010554 ENSMUST00000134571 Mettl16 protein_coding Interval_17031 chr10 70696788 70697125 + 0 NA Intergenic Intergenic 41888 ENSMUSG00000112607.1 ENSMUSG00000112607 ENSMUST00000219486 Gm33979 lincRNA Interval_61741 chr15 83724357 83725698 + 0 NA promoter-TSS (ENSMUSG00000016763.15) protein_coding-promoter-TSS (ENSMUSG00000016763.15) -66987 ENSMUSG00000041708.12 ENSMUSG00000041708 ENSMUST00000148868 Mpped1 protein_coding Interval_106966 chr3 102234963 102235197 + 0 NA Intergenic Intergenic -14589 ENSMUSG00000105151.1 ENSMUSG00000105151 ENSMUST00000198375 Gm43241 lincRNA Interval_4078 chr1 67484764 67485385 + 0 NA Intergenic Intergenic -99979 ENSMUSG00000082473.1 ENSMUSG00000082473 ENSMUST00000119302 Kif22-ps processed_pseudogene Interval_123702 chr5 34599208 34600231 + 0 NA TTS (ENSMUSG00000029106.14) protein_coding-TTS (ENSMUSG00000029106.14) -17048 ENSMUSG00000029106.14 ENSMUSG00000029106 ENSMUST00000139044 Add1 protein_coding Interval_27779 chr11 69955174 69956453 + 0 NA Intergenic Intergenic 5015 ENSMUSG00000084251.1 ENSMUSG00000084251 ENSMUST00000118013 Gm12310 processed_pseudogene Interval_9582 chr1 159725029 159725197 + 0 NA intron (ENSMUSG00000015829.13, intron 1 of 1) protein_coding-intron (ENSMUSG00000015829.13, intron 1 of 22) 43451 ENSMUSG00000073528.7 ENSMUSG00000073528 ENSMUST00000194909 Gm10530 processed_transcript Interval_68097 chr16 65031248 65031897 + 0 NA intron (ENSMUSG00000050783.5, intron 2 of 2) protein_coding-intron (ENSMUSG00000050783.5, intron 2 of 2) 74282 ENSMUSG00000050783.5 ENSMUSG00000050783 ENSMUST00000063076 Htr1f protein_coding Interval_118414 chr4 131270334 131270682 + 0 NA Intergenic Intergenic 31231 ENSMUSG00000088041.1 ENSMUSG00000088041 ENSMUST00000157416 Gm25261 snoRNA Interval_135674 chr6 43131152 43131619 + 0 NA Intergenic Intergenic -6748 ENSMUSG00000108149.1 ENSMUSG00000108149 ENSMUST00000204679 Olfr439-ps1 unprocessed_pseudogene Interval_64801 chr16 15905360 15905663 + 0 NA intron (ENSMUSG00000041974.10, intron 14 of 16) protein_coding-intron (ENSMUSG00000041974.10, intron 14 of 19) 17095 ENSMUSG00000071637.5 ENSMUSG00000071637 ENSMUST00000210772 Cebpd protein_coding Interval_114877 chr4 86651886 86652640 + 0 NA intron (ENSMUSG00000028494.12, intron 2 of 2) protein_coding-intron (ENSMUSG00000028494.12, intron 2 of 2) 6420 ENSMUSG00000028494.12 ENSMUSG00000028494 ENSMUST00000134094 Plin2 protein_coding Interval_383 chr1 4788064 4788739 + 0 NA Intergenic Intergenic -3835 ENSMUSG00000033845.13 ENSMUSG00000033845 ENSMUST00000132625 Mrpl15 protein_coding Interval_115683 chr4 102050166 102050373 + 0 NA Intergenic Intergenic -1142 ENSMUSG00000082264.1 ENSMUSG00000082264 ENSMUST00000118151 Gm12799 processed_pseudogene Interval_99313 chr2 158869693 158870149 + 0 NA Intergenic Intergenic 42503 ENSMUSG00000027655.14 ENSMUSG00000027655 ENSMUST00000143195 Dhx35 protein_coding Interval_21289 chr10 127683898 127684108 + 0 NA intron (ENSMUSG00000040195.11, intron 3 of 10) protein_coding-intron (ENSMUSG00000040195.11, intron 1 of 8) -7279 ENSMUSG00000087163.1 ENSMUSG00000087163 ENSMUST00000155550 Gm16230 antisense Interval_35868 chr12 31370616 31370831 + 0 NA Intergenic Intergenic -19309 ENSMUSG00000020664.10 ENSMUSG00000020664 ENSMUST00000220415 Dld protein_coding Interval_44850 chr13 49091454 49092443 + 0 NA intron (ENSMUSG00000037989.15, intron 6 of 27) protein_coding-intron (ENSMUSG00000037989.15, intron 6 of 27) 56064 ENSMUSG00000037989.15 ENSMUSG00000037989 ENSMUST00000159633 Wnk2 protein_coding Interval_135253 chr6 37863178 37864817 + 0 NA Intergenic Intergenic 2567 ENSMUSG00000106853.1 ENSMUSG00000106853 ENSMUST00000201745 Gm7492 processed_pseudogene Interval_133960 chr6 16730869 16731552 + 0 NA Intergenic Intergenic -46314 ENSMUSG00000107022.1 ENSMUSG00000107022 ENSMUST00000201757 Gm36669 lincRNA Interval_156174 chr8 45540671 45541236 + 0 NA promoter-TSS (ENSMUSG00000109665.1) TEC-promoter-TSS (ENSMUSG00000109665.1) -838 ENSMUSG00000109665.1 ENSMUSG00000109665 ENSMUST00000209900 Gm45458 TEC Interval_84244 chr19 8992804 8993246 + 0 NA intron (ENSMUSG00000069833.13, intron 1 of 6) protein_coding-intron (ENSMUSG00000069833.13, intron 1 of 5) 3741 ENSMUSG00000069833.13 ENSMUSG00000069833 ENSMUST00000237033 Ahnak protein_coding Interval_8308 chr1 137155736 137155938 + 0 NA Intergenic Intergenic 59810 ENSMUSG00000077207.1 ENSMUSG00000077207 ENSMUST00000104019 Gm25609 snRNA Interval_50064 chr14 7749283 7750305 + 0 NA promoter-TSS (ENSMUSG00000084775.2) lincRNA-promoter-TSS (ENSMUSG00000084775.2) -151 ENSMUSG00000084775.2 ENSMUSG00000084775 ENSMUST00000145085 Gm16741 lincRNA Interval_10389 chr1 170243210 170243594 + 0 NA intron (ENSMUSG00000073494.5, intron 1 of 2) protein_coding-intron (ENSMUSG00000073494.5, intron 1 of 2) 10653 ENSMUSG00000073494.5 ENSMUSG00000073494 ENSMUST00000097470 Sh2d1b2 protein_coding Interval_19072 chr10 94230357 94231188 + 0 NA Intergenic Intergenic 31768 ENSMUSG00000020022.17 ENSMUSG00000020022 ENSMUST00000125379 Ndufa12 protein_coding Interval_31600 chr11 101620053 101620858 + 0 NA Intergenic Intergenic -6911 ENSMUSG00000065767.1 ENSMUSG00000065767 ENSMUST00000083833 Gm23849 snRNA Interval_98293 chr2 150849074 150849841 + 0 NA intron (ENSMUSG00000032046.15, intron 2 of 12) protein_coding-intron (ENSMUSG00000032046.15, intron 2 of 12) -6887 ENSMUSG00000032046.15 ENSMUSG00000032046 ENSMUST00000129228 Abhd12 protein_coding Interval_162829 chr9 9837096 9837445 + 0 NA intron (ENSMUSG00000039488.15, intron 7 of 18) protein_coding-intron (ENSMUSG00000039488.15, intron 11 of 22) -57161 ENSMUSG00000098408.1 ENSMUSG00000098408 ENSMUST00000183808 Mir6237 miRNA Interval_49605 chr13 113475990 113476369 + 0 NA intron (ENSMUSG00000114790.1, intron 3 of 6) lincRNA-intron (ENSMUSG00000114790.1, intron 3 of 6) 4064 ENSMUSG00000114659.1 ENSMUSG00000114659 ENSMUST00000223591 Gm31191 processed_pseudogene Interval_173094 chrX 71521468 71521890 + 0 NA Intergenic Intergenic 9697 ENSMUSG00000094123.1 ENSMUSG00000094123 ENSMUST00000179609 Gm23945 miRNA Interval_137910 chr6 83302089 83303415 + 0 NA intron (ENSMUSG00000068323.12, intron 26 of 26) protein_coding-intron (ENSMUSG00000068323.12, intron 24 of 24) 14191 ENSMUSG00000108053.1 ENSMUSG00000108053 ENSMUST00000203437 Gm43890 TEC Interval_119282 chr4 136636159 136639420 + 0 NA exon (ENSMUSG00000070683.7, exon 8 of 8) protein_coding-exon (ENSMUSG00000070683.7, exon 8 of 8) -1793 ENSMUSG00000103119.1 ENSMUSG00000103119 ENSMUST00000195460 Gm37583 TEC Interval_34861 chr12 12787464 12789158 + 0 NA intron (ENSMUSG00000091430.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000091430.1, intron 1 of 1) 326 ENSMUSG00000091430.1 ENSMUSG00000091430 ENSMUST00000171380 Platr19 lincRNA Interval_37460 chr12 69132143 69132417 + 0 NA intron (ENSMUSG00000113158.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000113158.1, intron 1 of 2) 2444 ENSMUSG00000113158.1 ENSMUSG00000113158 ENSMUST00000222345 Gm31447 lincRNA Interval_99848 chr2 165275352 165276684 + 0 NA TTS (ENSMUSG00000017664.16) protein_coding-TTS (ENSMUSG00000017664.16) -5842 ENSMUSG00000087800.1 ENSMUSG00000087800 ENSMUST00000157175 Gm25569 snoRNA Interval_169375 chr9 96782689 96783349 + 0 NA TTS (ENSMUSG00000101581.6) processed_transcript-TTS (ENSMUSG00000101581.6) 17434 ENSMUSG00000101581.6 ENSMUSG00000101581 ENSMUST00000190054 C430002N11Rik processed_transcript Interval_55174 chr14 78996711 78997617 + 0 NA intron (ENSMUSG00000058997.8, intron 16 of 25) protein_coding-intron (ENSMUSG00000058997.8, intron 16 of 44) -30596 ENSMUSG00000115539.1 ENSMUSG00000115539 ENSMUST00000227296 Gm6997 processed_pseudogene Interval_109974 chr3 152259165 152260082 + 0 NA intron (ENSMUSG00000039103.12, intron 1 of 2) protein_coding-intron (ENSMUSG00000039103.12, intron 1 of 12) 6145 ENSMUSG00000039103.12 ENSMUSG00000039103 ENSMUST00000199752 Nexn protein_coding Interval_112293 chr4 40158016 40158369 + 0 NA intron (ENSMUSG00000028405.9, intron 1 of 20) protein_coding-intron (ENSMUSG00000028405.9, intron 1 of 20) -5527 ENSMUSG00000028405.9 ENSMUSG00000028405 ENSMUST00000135787 Aco1 protein_coding Interval_22357 chr11 9065276 9065473 + 0 NA intron (ENSMUSG00000040978.4, intron 6 of 6) protein_coding-intron (ENSMUSG00000040978.4, intron 6 of 6) -16383 ENSMUSG00000040985.13 ENSMUSG00000040985 ENSMUST00000102909 Sun3 protein_coding Interval_26174 chr11 54893993 54894354 + 0 NA Intergenic Intergenic -8753 ENSMUSG00000018339.11 ENSMUSG00000018339 ENSMUST00000149324 Gpx3 protein_coding Interval_61815 chr15 84351502 84351977 + 0 NA Intergenic Intergenic -4960 ENSMUSG00000116442.1 ENSMUSG00000116442 ENSMUST00000230576 Gm5214 processed_pseudogene Interval_163042 chr9 14750815 14752669 + 0 NA exon (ENSMUSG00000049307.6, exon 1 of 1) protein_coding-exon (ENSMUSG00000049307.6, exon 1 of 1) 651 ENSMUSG00000049307.6 ENSMUSG00000049307 ENSMUST00000061498 Fut4 protein_coding Interval_129381 chr5 119636219 119636439 + 0 NA intron (ENSMUSG00000087516.7, intron 2 of 2) antisense-intron (ENSMUSG00000087516.7, intron 2 of 2) -9024 ENSMUSG00000087516.7 ENSMUSG00000087516 ENSMUST00000129108 Tbx3os1 antisense Interval_140064 chr6 113727538 113728001 + 0 NA TTS (ENSMUSG00000030298.10) protein_coding-TTS (ENSMUSG00000030298.10) 2546 ENSMUSG00000108137.1 ENSMUSG00000108137 ENSMUST00000203364 Gm44053 lincRNA Interval_95647 chr2 113439885 113441606 + 0 NA promoter-TSS (ENSMUSG00000044042.19) protein_coding-promoter-TSS (ENSMUSG00000044042.19) 349 ENSMUSG00000085448.1 ENSMUSG00000085448 ENSMUST00000143525 Gm13963 antisense Interval_65978 chr16 30661946 30662326 + 0 NA Intergenic Intergenic 62413 ENSMUSG00000046546.3 ENSMUSG00000046546 ENSMUST00000059078 Fam43a protein_coding Interval_126869 chr5 96226619 96226831 + 0 NA intron (ENSMUSG00000029486.13, intron 4 of 6) protein_coding-intron (ENSMUSG00000029486.13, intron 4 of 8) 16581 ENSMUSG00000029486.13 ENSMUSG00000029486 ENSMUST00000121477 Mrpl1 protein_coding Interval_8621 chr1 144165692 144165960 + 0 NA intron (ENSMUSG00000051079.8, intron 4 of 5) protein_coding-intron (ENSMUSG00000051079.8, intron 4 of 5) 11449 ENSMUSG00000051079.8 ENSMUSG00000051079 ENSMUST00000111941 Rgs13 protein_coding Interval_63912 chr16 4540247 4540454 + 0 NA TTS (ENSMUSG00000083585.1) processed_pseudogene-TTS (ENSMUSG00000083585.1) 1042 ENSMUSG00000083585.1 ENSMUSG00000083585 ENSMUST00000122114 Gm15885 processed_pseudogene Interval_76836 chr17 84416301 84416565 + 0 NA intron (ENSMUSG00000024251.10, intron 6 of 14) protein_coding-intron (ENSMUSG00000024251.10, intron 21 of 37) 25004 ENSMUSG00000096415.1 ENSMUSG00000096415 ENSMUST00000179017 Gm24722 snRNA Interval_45788 chr13 58083564 58083792 + 0 NA intron (ENSMUSG00000014164.15, intron 3 of 14) protein_coding-intron (ENSMUSG00000014164.15, intron 5 of 16) 29914 ENSMUSG00000014164.15 ENSMUSG00000014164 ENSMUST00000160860 Klhl3 protein_coding Interval_93624 chr2 75089127 75089820 + 0 NA Intergenic Intergenic 48325 ENSMUSG00000087333.1 ENSMUSG00000087333 ENSMUST00000143898 Gm13652 lincRNA Interval_170245 chr9 106428707 106430724 + 0 NA exon (ENSMUSG00000048758.14, exon 1 of 3) protein_coding-exon (ENSMUSG00000048758.14, exon 1 of 3) 153 ENSMUSG00000048758.14 ENSMUSG00000048758 ENSMUST00000214067 Rpl29 protein_coding Interval_166045 chr9 56032212 56032533 + 0 NA Intergenic Intergenic 4630 ENSMUSG00000110989.1 ENSMUSG00000110989 ENSMUST00000217455 Gm7444 processed_pseudogene Interval_20206 chr10 115833580 115834680 + 0 NA TTS (ENSMUSG00000034127.15) protein_coding-TTS (ENSMUSG00000034127.15) 17298 ENSMUSG00000034127.15 ENSMUSG00000034127 ENSMUST00000035563 Tspan8 protein_coding Interval_143581 chr7 12959486 12960170 + 0 NA intron (ENSMUSG00000102084.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000097115.2, intron 1 of 1) 529 ENSMUSG00000102084.1 ENSMUSG00000102084 ENSMUST00000186106 Gm29638 lincRNA Interval_3178 chr1 54498337 54499038 + 0 NA intron (ENSMUSG00000073678.4, intron 19 of 26) protein_coding-intron (ENSMUSG00000073678.4, intron 19 of 26) 21583 ENSMUSG00000104136.1 ENSMUSG00000104136 ENSMUST00000194316 Gm36955 TEC Interval_28969 chr11 79635795 79636810 + 0 NA promoter-TSS (ENSMUSG00000088879.1) snRNA-promoter-TSS (ENSMUSG00000088879.1) -889 ENSMUSG00000088879.1 ENSMUSG00000088879 ENSMUST00000158254 Gm25867 snRNA Interval_46950 chr13 73687164 73687604 + 0 NA intron (ENSMUSG00000021565.16, intron 5 of 10) protein_coding-intron (ENSMUSG00000021565.16, intron 6 of 11) 4870 ENSMUSG00000021565.16 ENSMUSG00000021565 ENSMUST00000140878 Slc6a19 protein_coding Interval_72508 chr17 30279989 30280963 + 0 NA intron (ENSMUSG00000062202.14, intron 6 of 7) protein_coding-intron (ENSMUSG00000062202.14, intron 8 of 11) -30603 ENSMUSG00000089222.1 ENSMUSG00000089222 ENSMUST00000158597 Gm25049 snRNA Interval_21272 chr10 127578571 127578977 + 0 NA intron (ENSMUSG00000040249.15, intron 1 of 1) protein_coding-intron (ENSMUSG00000040249.15, intron 20 of 88) -17774 ENSMUSG00000086499.1 ENSMUSG00000086499 ENSMUST00000124182 Gm16217 antisense Interval_15277 chr10 44044895 44045407 + 0 NA intron (ENSMUSG00000019866.15, intron 2 of 21) protein_coding-intron (ENSMUSG00000019866.15, intron 2 of 21) 13627 ENSMUSG00000019866.15 ENSMUSG00000019866 ENSMUST00000239010 Crybg1 protein_coding Interval_135334 chr6 38402640 38403578 + 0 NA intron (ENSMUSG00000056832.14, intron 9 of 17) protein_coding-intron (ENSMUSG00000056832.14, intron 10 of 17) 6842 ENSMUSG00000089905.1 ENSMUSG00000089905 ENSMUST00000162673 Gm16563 processed_pseudogene Interval_47135 chr13 76177854 76178194 + 0 NA intron (ENSMUSG00000033991.9, intron 40 of 44) protein_coding-intron (ENSMUSG00000033991.9, intron 40 of 43) -20967 ENSMUSG00000114664.1 ENSMUSG00000114664 ENSMUST00000225364 Gm48639 TEC Interval_132315 chr5 144112218 144113098 + 0 NA promoter-TSS (ENSMUSG00000098039.1) processed_pseudogene-promoter-TSS (ENSMUSG00000098039.1) -886 ENSMUSG00000098039.1 ENSMUSG00000098039 ENSMUST00000182470 Gm26925 processed_pseudogene Interval_29599 chr11 85270436 85271405 + 0 NA Intergenic Intergenic 26829 ENSMUSG00000088136.1 ENSMUSG00000088136 ENSMUST00000157511 Gm22587 misc_RNA Interval_134924 chr6 33681708 33682466 + 0 NA intron (ENSMUSG00000029763.17, intron 10 of 12) protein_coding-intron (ENSMUSG00000029763.17, intron 10 of 17) 10067 ENSMUSG00000107103.1 ENSMUSG00000107103 ENSMUST00000202529 Gm43164 TEC Interval_33948 chr11 119610039 119610330 + 0 NA intron (ENSMUSG00000025583.15, intron 1 of 32) protein_coding-intron (ENSMUSG00000025583.15, intron 1 of 33) 36446 ENSMUSG00000083870.1 ENSMUSG00000083870 ENSMUST00000121392 Gm11761 processed_pseudogene Interval_18944 chr10 93291005 93292112 + 0 NA intron (ENSMUSG00000008398.16, intron 1 of 3) protein_coding-intron (ENSMUSG00000008398.16, intron 1 of 4) 19411 ENSMUSG00000008398.16 ENSMUSG00000008398 ENSMUST00000133365 Elk3 protein_coding Interval_151836 chr7 127014365 127014765 + 0 NA promoter-TSS (ENSMUSG00000030681.18) protein_coding-promoter-TSS (ENSMUSG00000030681.18) -15 ENSMUSG00000030681.18 ENSMUSG00000030681 ENSMUST00000206511 Mvp protein_coding Interval_58747 chr15 37745841 37746188 + 0 NA intron (ENSMUSG00000051359.15, intron 1 of 2) protein_coding-intron (ENSMUSG00000051359.15, intron 1 of 6) -11679 ENSMUSG00000115157.1 ENSMUSG00000115157 ENSMUST00000145909 Gm49397 processed_transcript Interval_101861 chr3 10237928 10238128 + 0 NA Intergenic Intergenic -3784 ENSMUSG00000102834.2 ENSMUSG00000102834 ENSMUST00000194040 1700029B24Rik TEC Interval_42427 chr13 13454125 13454902 + 0 NA intron (ENSMUSG00000005397.8, intron 1 of 13) protein_coding-intron (ENSMUSG00000005397.8, intron 1 of 19) 27892 ENSMUSG00000113380.1 ENSMUSG00000113380 ENSMUST00000220813 Gm48682 antisense Interval_169959 chr9 103229459 103231195 + 0 NA promoter-TSS (ENSMUSG00000032554.15) protein_coding-promoter-TSS (ENSMUSG00000032554.15) -18321 ENSMUSG00000032554.15 ENSMUSG00000032554 ENSMUST00000126359 Trf protein_coding Interval_172979 chrX 59556560 59557096 + 0 NA intron (ENSMUSG00000031137.17, intron 2 of 2) protein_coding-intron (ENSMUSG00000031137.17, intron 2 of 5) 11220 ENSMUSG00000031137.17 ENSMUSG00000031137 ENSMUST00000150413 Fgf13 protein_coding Interval_28288 chr11 74925394 74926589 + 0 NA promoter-TSS (ENSMUSG00000001323.17) protein_coding-promoter-TSS (ENSMUSG00000001323.17) -316 ENSMUSG00000001323.17 ENSMUSG00000001323 ENSMUST00000138612 Srr protein_coding Interval_158682 chr8 85119092 85120063 + 0 NA promoter-TSS (ENSMUSG00000074194.4) protein_coding-promoter-TSS (ENSMUSG00000074194.4) -3151 ENSMUSG00000110219.1 ENSMUSG00000110219 ENSMUST00000210385 Gm45317 processed_pseudogene Interval_144385 chr7 24838766 24839939 + 0 NA intron (ENSMUSG00000011350.15, intron 10 of 10) processed_transcript-intron (ENSMUSG00000011350.15, intron 11 of 11) 20557 ENSMUSG00000011350.15 ENSMUSG00000011350 ENSMUST00000155799 Gm5893 processed_transcript Interval_136131 chr6 51395364 51396059 + 0 NA Intergenic Intergenic 6508 ENSMUSG00000108236.1 ENSMUSG00000108236 ENSMUST00000204546 0610033M10Rik lincRNA Interval_136687 chr6 57749929 57750275 + 0 NA intron (ENSMUSG00000037788.14, intron 4 of 4) protein_coding-intron (ENSMUSG00000037788.14, intron 4 of 4) 47015 ENSMUSG00000062190.12 ENSMUSG00000062190 ENSMUST00000153777 Lancl2 protein_coding Interval_71207 chr17 21132344 21132851 + 0 NA Intergenic Intergenic 3246 ENSMUSG00000096857.1 ENSMUSG00000096857 ENSMUST00000170486 Gm7732 processed_pseudogene Interval_40155 chr12 102015655 102016040 + 0 NA Intergenic Intergenic -38779 ENSMUSG00000113902.1 ENSMUSG00000113902 ENSMUST00000222608 Ndufb1-ps protein_coding Interval_86258 chr19 38206493 38206912 + 0 NA intron (ENSMUSG00000054237.6, intron 8 of 8) protein_coding-intron (ENSMUSG00000054237.6, intron 8 of 13) 17436 ENSMUSG00000054237.6 ENSMUSG00000054237 ENSMUST00000238154 Fra10ac1 protein_coding Interval_152033 chr7 128438985 128439854 + 0 NA TTS (ENSMUSG00000030846.15) protein_coding-TTS (ENSMUSG00000030846.15) -20661 ENSMUSG00000030844.11 ENSMUSG00000030844 ENSMUST00000147840 Rgs10 protein_coding Interval_127657 chr5 106365169 106365535 + 0 NA exon (ENSMUSG00000106594.1, exon 2 of 2) lincRNA-exon (ENSMUSG00000106594.1, exon 2 of 2) 1497 ENSMUSG00000106594.1 ENSMUSG00000106594 ENSMUST00000198220 4930432H08Rik lincRNA Interval_93901 chr2 78753219 78753438 + 0 NA Intergenic Intergenic 92125 ENSMUSG00000084101.1 ENSMUSG00000084101 ENSMUST00000120765 Gm17014 processed_pseudogene Interval_85799 chr19 31756095 31756613 + 0 NA intron (ENSMUSG00000052920.16, intron 1 of 2) protein_coding-intron (ENSMUSG00000052920.16, intron 1 of 17) -112427 ENSMUSG00000052595.8 ENSMUSG00000052595 ENSMUST00000225165 A1cf protein_coding Interval_113650 chr4 57261443 57262111 + 0 NA intron (ENSMUSG00000038764.14, intron 5 of 9) protein_coding-intron (ENSMUSG00000038764.14, intron 5 of 25) -38319 ENSMUSG00000085654.1 ENSMUSG00000085654 ENSMUST00000129102 Gm12536 lincRNA Interval_146795 chr7 51621607 51622443 + 0 NA promoter-TSS (ENSMUSG00000030500.6) protein_coding-promoter-TSS (ENSMUSG00000030500.6) -7455 ENSMUSG00000030500.6 ENSMUSG00000030500 ENSMUST00000208597 Slc17a6 protein_coding Interval_67717 chr16 56231486 56232943 + 0 NA intron (ENSMUSG00000035270.15, intron 8 of 18) protein_coding-intron (ENSMUSG00000035270.15, intron 8 of 19) 27901 ENSMUSG00000035270.15 ENSMUSG00000035270 ENSMUST00000159842 Impg2 protein_coding Interval_158252 chr8 80564410 80564839 + 0 NA Intergenic Intergenic -46456 ENSMUSG00000042353.9 ENSMUSG00000042353 ENSMUST00000039695 Frem3 protein_coding Interval_43508 chr13 32243237 32243443 + 0 NA intron (ENSMUSG00000038372.14, intron 1 of 3) protein_coding-intron (ENSMUSG00000038372.14, intron 1 of 10) 95284 ENSMUSG00000038372.14 ENSMUSG00000038372 ENSMUST00000179717 Gmds protein_coding Interval_69725 chr16 95831393 95832669 + 0 NA exon (ENSMUSG00000117232.1, exon 4 of 4) lincRNA-exon (ENSMUSG00000117232.1, exon 4 of 4) 13739 ENSMUSG00000117232.1 ENSMUSG00000117232 ENSMUST00000233375 1600002D24Rik lincRNA Interval_54504 chr14 70311615 70313789 + 0 NA intron (ENSMUSG00000022094.15, intron 5 of 9) protein_coding-intron (ENSMUSG00000022094.15, intron 5 of 9) -1462 ENSMUSG00000022094.15 ENSMUSG00000022094 ENSMUST00000142598 Slc39a14 protein_coding Interval_162298 chr8 126860417 126861387 + 0 NA intron (ENSMUSG00000110697.1, intron 1 of 4) lincRNA-intron (ENSMUSG00000110697.1, intron 1 of 8) 21669 ENSMUSG00000110498.1 ENSMUSG00000110498 ENSMUST00000212914 A630001O12Rik lincRNA Interval_122676 chr5 24604452 24605096 + 0 NA intron (ENSMUSG00000028949.13, intron 2 of 13) protein_coding-intron (ENSMUSG00000028949.13, intron 2 of 13) 12660 ENSMUSG00000076387.1 ENSMUSG00000076387 ENSMUST00000102432 Mir671 miRNA Interval_55279 chr14 80000422 80001197 + 0 NA intron (ENSMUSG00000022026.7, intron 1 of 4) protein_coding-intron (ENSMUSG00000022026.7, intron 1 of 6) 558 ENSMUSG00000022026.7 ENSMUSG00000022026 ENSMUST00000088735 Olfm4 protein_coding Interval_121179 chr4 153842115 153842405 + 0 NA Intergenic Intergenic -34124 ENSMUSG00000077519.1 ENSMUSG00000077519 ENSMUST00000104331 Gm25880 snoRNA Interval_169382 chr9 96818478 96819126 + 0 NA Intergenic Intergenic -4468 ENSMUSG00000100922.1 ENSMUSG00000100922 ENSMUST00000186517 Gm8520 processed_pseudogene Interval_8134 chr1 135918514 135919620 + 0 NA promoter-TSS (ENSMUSG00000026413.12) protein_coding-promoter-TSS (ENSMUSG00000026413.12) 75 ENSMUSG00000026413.12 ENSMUSG00000026413 ENSMUST00000132793 Pkp1 protein_coding Interval_77393 chr17 88403882 88405694 + 0 NA Intergenic Intergenic -11856 ENSMUSG00000095624.1 ENSMUSG00000095624 ENSMUST00000093636 Gm23947 snRNA Interval_75164 chr17 64217041 64217621 + 0 NA Intergenic Intergenic 104284 ENSMUSG00000080455.1 ENSMUSG00000080455 ENSMUST00000116805 Gm24194 miRNA Interval_126336 chr5 86791375 86791608 + 0 NA intron (ENSMUSG00000105704.1, intron 2 of 4) lincRNA-intron (ENSMUSG00000105704.1, intron 2 of 4) -8458 ENSMUSG00000104937.1 ENSMUSG00000104937 ENSMUST00000196789 Gm43057 lincRNA Interval_151517 chr7 123214037 123215508 + 0 NA promoter-TSS (ENSMUSG00000030769.15) protein_coding-promoter-TSS (ENSMUSG00000030769.15) 43126 ENSMUSG00000052707.8 ENSMUSG00000052707 ENSMUST00000206126 Tnrc6a protein_coding Interval_65135 chr16 20097198 20098474 + 0 NA exon (ENSMUSG00000062901.3, exon 1 of 1) protein_coding-exon (ENSMUSG00000062901.3, exon 1 of 1) 251 ENSMUSG00000062901.3 ENSMUSG00000062901 ENSMUST00000231842 Klhl24 protein_coding Interval_77470 chr17 89298599 89299039 + 0 NA Intergenic Intergenic -21408 ENSMUSG00000117364.1 ENSMUSG00000117364 ENSMUST00000234989 4933400B14Rik lincRNA Interval_116720 chr4 116827920 116828136 + 0 NA intron (ENSMUSG00000086417.1, intron 1 of 1) antisense-intron (ENSMUSG00000086417.1, intron 1 of 1) 3125 ENSMUSG00000086417.1 ENSMUSG00000086417 ENSMUST00000151670 Gm12996 antisense Interval_50623 chr14 16765986 16766501 + 0 NA intron (ENSMUSG00000017491.9, intron 1 of 3) protein_coding-intron (ENSMUSG00000017491.9, intron 1 of 3) -180416 ENSMUSG00000114890.1 ENSMUSG00000114890 ENSMUST00000223705 Tpi-rs9 processed_pseudogene Interval_31975 chr11 104274453 104274793 + 0 NA intron (ENSMUSG00000018411.17, intron 1 of 5) protein_coding-intron (ENSMUSG00000018411.17, intron 1 of 11) -15262 ENSMUSG00000085134.1 ENSMUSG00000085134 ENSMUST00000137561 Gm11659 antisense Interval_129210 chr5 118212697 118212928 + 0 NA intron (ENSMUSG00000032850.16, intron 1 of 4) protein_coding-intron (ENSMUSG00000032850.16, intron 8 of 11) -1470 ENSMUSG00000089248.1 ENSMUSG00000089248 ENSMUST00000158623 Gm24050 misc_RNA Interval_17633 chr10 78374919 78375161 + 0 NA Intergenic Intergenic -4720 ENSMUSG00000084496.1 ENSMUSG00000084496 ENSMUST00000122547 Gm22514 misc_RNA Interval_169704 chr9 100519697 100521373 + 0 NA intron (ENSMUSG00000032475.15, intron 1 of 2) protein_coding-intron (ENSMUSG00000032475.15, intron 1 of 3) 10536 ENSMUSG00000100176.1 ENSMUSG00000100176 ENSMUST00000189857 Gm28586 sense_intronic Interval_103818 chr3 53314180 53314661 + 0 NA Intergenic Intergenic 32809 ENSMUSG00000106660.1 ENSMUSG00000106660 ENSMUST00000200175 Gm43472 processed_pseudogene Interval_68751 chr16 85491203 85491446 + 0 NA intron (ENSMUSG00000041134.15, intron 2 of 3) protein_coding-intron (ENSMUSG00000041134.15, intron 2 of 3) 59093 ENSMUSG00000041134.15 ENSMUSG00000041134 ENSMUST00000162621 Cyyr1 protein_coding Interval_59209 chr15 48423493 48424149 + 0 NA intron (ENSMUSG00000022311.15, intron 5 of 70) protein_coding-intron (ENSMUSG00000022311.15, intron 5 of 70) -127487 ENSMUSG00000065742.1 ENSMUSG00000065742 ENSMUST00000083808 Gm25007 snRNA Interval_153551 chr8 3387077 3388758 + 0 NA intron (ENSMUSG00000004568.13, intron 8 of 28) protein_coding-intron (ENSMUSG00000004568.13, intron 8 of 10) 34480 ENSMUSG00000004568.13 ENSMUSG00000004568 ENSMUST00000145360 Arhgef18 protein_coding Interval_146923 chr7 55891715 55893209 + 0 NA TTS (ENSMUSG00000030447.15) protein_coding-TTS (ENSMUSG00000030447.15) 10849 ENSMUSG00000092526.1 ENSMUSG00000092526 ENSMUST00000173150 Gm17907 processed_pseudogene Interval_61586 chr15 82803329 82804189 + 0 NA intron (ENSMUSG00000116280.1, intron 1 of 6) unprocessed_pseudogene-intron (ENSMUSG00000116280.1, intron 1 of 6) 205 ENSMUSG00000116280.1 ENSMUSG00000116280 ENSMUST00000229945 Gm49435 unprocessed_pseudogene Interval_55155 chr14 78703364 78703736 + 0 NA promoter-TSS (ENSMUSG00000115107.1) processed_pseudogene-promoter-TSS (ENSMUSG00000115107.1) -260 ENSMUSG00000115107.1 ENSMUSG00000115107 ENSMUST00000228480 Gm18368 processed_pseudogene Interval_64015 chr16 5306492 5307535 + 0 NA exon (ENSMUSG00000116029.1, exon 1 of 3) lincRNA-exon (ENSMUSG00000116029.1, exon 1 of 3) 212 ENSMUSG00000116029.1 ENSMUSG00000116029 ENSMUST00000229837 Gm41414 lincRNA Interval_139868 chr6 112152650 112153182 + 0 NA Intergenic Intergenic -57792 ENSMUSG00000100219.1 ENSMUSG00000100219 ENSMUST00000186102 1700054K19Rik lincRNA Interval_108544 chr3 128349263 128349711 + 0 NA Intergenic Intergenic -68396 ENSMUSG00000106119.1 ENSMUSG00000106119 ENSMUST00000197882 Gm43656 processed_pseudogene Interval_19744 chr10 108431690 108432717 + 0 NA intron (ENSMUSG00000112532.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000112532.1, intron 1 of 2) 4136 ENSMUSG00000093762.1 ENSMUSG00000093762 ENSMUST00000177317 Gm25591 miRNA Interval_26917 chr11 61545406 61546040 + 0 NA TTS (ENSMUSG00000001036.17) protein_coding-TTS (ENSMUSG00000001036.17) 17968 ENSMUSG00000085459.1 ENSMUSG00000085459 ENSMUST00000138136 Gm12272 antisense Interval_60176 chr15 67005672 67006195 + 0 NA intron (ENSMUSG00000091412.1, intron 1 of 1) bidirectional_promoter_lncRNA-intron (ENSMUSG00000091412.1, intron 1 of 1) -34125 ENSMUSG00000116289.1 ENSMUSG00000116289 ENSMUST00000230911 Gm31342 lincRNA Interval_55961 chr14 103312153 103312364 + 0 NA exon (ENSMUSG00000033004.16, exon 3 of 3) protein_coding-exon (ENSMUSG00000033004.16, exon 3 of 3) 34542 ENSMUSG00000033004.16 ENSMUSG00000033004 ENSMUST00000162537 Mycbp2 protein_coding Interval_111608 chr4 24536936 24537904 + 0 NA intron (ENSMUSG00000045751.16, intron 13 of 16) protein_coding-intron (ENSMUSG00000045751.16, intron 12 of 22) 40969 ENSMUSG00000045751.16 ENSMUSG00000045751 ENSMUST00000123984 Mms22l protein_coding Interval_107754 chr3 113197004 113197618 + 0 NA intron (ENSMUSG00000081506.1, intron 2 of 8) unprocessed_pseudogene-intron (ENSMUSG00000081506.1, intron 2 of 8) 9386 ENSMUSG00000081506.1 ENSMUSG00000081506 ENSMUST00000122117 Amy2-ps1 unprocessed_pseudogene Interval_74236 chr17 47622597 47622969 + 0 NA promoter-TSS (ENSMUSG00000083672.1) processed_pseudogene-promoter-TSS (ENSMUSG00000083672.1) -444 ENSMUSG00000083672.1 ENSMUSG00000083672 ENSMUST00000120025 Kpna2-ps processed_pseudogene Interval_42186 chr13 9668598 9669296 + 0 NA TTS (ENSMUSG00000048264.16) protein_coding-TTS (ENSMUSG00000048264.16) -15346 ENSMUSG00000114138.1 ENSMUSG00000114138 ENSMUST00000222421 Gm36423 antisense Interval_60636 chr15 75850300 75851465 + 0 NA Intergenic Intergenic 5346 ENSMUSG00000098203.1 ENSMUSG00000098203 ENSMUST00000182514 Gm9568 processed_pseudogene Interval_86308 chr19 38550788 38550980 + 0 NA intron (ENSMUSG00000024998.17, intron 2 of 32) protein_coding-intron (ENSMUSG00000024998.17, intron 1 of 31) -77682 ENSMUSG00000088940.1 ENSMUSG00000088940 ENSMUST00000158315 Gm24930 misc_RNA Interval_52822 chr14 50876572 50876992 + 0 NA TTS (ENSMUSG00000097431.2) antisense-TTS (ENSMUSG00000097431.2) 6398 ENSMUSG00000097431.2 ENSMUSG00000097431 ENSMUST00000228254 Gm26782 antisense Interval_1400 chr1 21351246 21351538 + 0 NA exon (ENSMUSG00000067750.3, exon 3 of 3) protein_coding-exon (ENSMUSG00000067750.3, exon 3 of 3) 1751 ENSMUSG00000067750.3 ENSMUSG00000067750 ENSMUST00000088407 Khdc1a protein_coding Interval_65620 chr16 24282196 24282705 + 0 NA intron (ENSMUSG00000115852.2, intron 4 of 4) transcribed_processed_pseudogene-intron (ENSMUSG00000115852.2, intron 2 of 3) -65941 ENSMUSG00000115869.1 ENSMUSG00000115869 ENSMUST00000230869 Gm31814 sense_intronic Interval_75004 chr17 59646988 59647177 + 0 NA Intergenic Intergenic -9513 ENSMUSG00000117178.1 ENSMUSG00000117178 ENSMUST00000233632 Gm49852 processed_pseudogene Interval_169037 chr9 90698676 90699267 + 0 NA Intergenic Intergenic 34553 ENSMUSG00000099366.1 ENSMUSG00000099366 ENSMUST00000189539 Gm2497 processed_pseudogene Interval_76061 chr17 74644356 74644625 + 0 NA intron (ENSMUSG00000024073.16, intron 49 of 72) protein_coding-intron (ENSMUSG00000024073.16, intron 49 of 72) 8768 ENSMUSG00000024073.16 ENSMUSG00000024073 ENSMUST00000182157 Birc6 protein_coding Interval_25183 chr11 44863105 44864634 + 0 NA intron (ENSMUSG00000057098.14, intron 6 of 15) protein_coding-intron (ENSMUSG00000057098.14, intron 6 of 15) -201193 ENSMUSG00000085784.1 ENSMUSG00000085784 ENSMUST00000130493 Gm12158 antisense Interval_26991 chr11 62238156 62238390 + 0 NA Intergenic Intergenic -10711 ENSMUSG00000018500.2 ENSMUSG00000018500 ENSMUST00000018644 Adora2b protein_coding Interval_81759 chr18 64482254 64482811 + 0 NA exon (ENSMUSG00000024588.9, exon 2 of 2) protein_coding-exon (ENSMUSG00000024588.9, exon 2 of 2) 6409 ENSMUSG00000024588.9 ENSMUSG00000024588 ENSMUST00000235843 Fech protein_coding Interval_42490 chr13 14056197 14057778 + 0 NA intron (ENSMUSG00000021302.10, intron 1 of 2) protein_coding-intron (ENSMUSG00000021302.10, intron 2 of 3) -2798 ENSMUSG00000021302.10 ENSMUSG00000021302 ENSMUST00000221406 Ggps1 protein_coding Interval_17353 chr10 76034062 76034506 + 0 NA intron (ENSMUSG00000049764.8, intron 2 of 2) protein_coding-intron (ENSMUSG00000049764.8, intron 1 of 1) 1634 ENSMUSG00000049764.8 ENSMUSG00000049764 ENSMUST00000061617 Zfp280b protein_coding Interval_69008 chr16 90095039 90097008 + 0 NA intron (ENSMUSG00000002489.16, intron 1 of 11) protein_coding-intron (ENSMUSG00000002489.16, intron 1 of 11) 6040 ENSMUSG00000116536.1 ENSMUSG00000116536 ENSMUST00000232386 Gm2805 processed_pseudogene Interval_24600 chr11 35078392 35079098 + 0 NA Intergenic Intergenic -92884 ENSMUSG00000056427.10 ENSMUSG00000056427 ENSMUST00000124438 Slit3 protein_coding Interval_91541 chr2 42083424 42084355 + 0 NA intron (ENSMUSG00000049252.17, intron 2 of 2) protein_coding-intron (ENSMUSG00000049252.17, intron 2 of 90) -40732 ENSMUSG00000081085.1 ENSMUSG00000081085 ENSMUST00000119020 Gm13463 processed_pseudogene Interval_28376 chr11 75467586 75468759 + 0 NA promoter-TSS (ENSMUSG00000038217.13) protein_coding-promoter-TSS (ENSMUSG00000038217.13) -539 ENSMUSG00000038217.13 ENSMUSG00000038217 ENSMUST00000153236 Tlcd2 protein_coding Interval_114881 chr4 86681637 86682020 + 0 NA Intergenic Intergenic -23145 ENSMUSG00000028494.12 ENSMUSG00000028494 ENSMUST00000134094 Plin2 protein_coding Interval_104821 chr3 75499665 75500199 + 0 NA Intergenic Intergenic -17776 ENSMUSG00000104301.3 ENSMUSG00000104301 ENSMUST00000204982 Wdr49 protein_coding Interval_45340 chr13 54564644 54566307 + 0 NA promoter-TSS (ENSMUSG00000025871.18) protein_coding-promoter-TSS (ENSMUSG00000025871.18) -142 ENSMUSG00000025871.18 ENSMUSG00000025871 ENSMUST00000126295 4833439L19Rik protein_coding Interval_92128 chr2 53559691 53560114 + 0 NA Intergenic Intergenic 7976 ENSMUSG00000080716.1 ENSMUSG00000080716 ENSMUST00000119017 Gm13503 processed_pseudogene Interval_83666 chr19 3581144 3581817 + 0 NA Intergenic Intergenic -5758 ENSMUSG00000024908.15 ENSMUSG00000024908 ENSMUST00000226109 Ppp6r3 protein_coding Interval_60106 chr15 65794648 65795333 + 0 NA intron (ENSMUSG00000015002.18, intron 1 of 3) protein_coding-intron (ENSMUSG00000015002.18, intron 1 of 22) -56131 ENSMUSG00000015002.18 ENSMUSG00000015002 ENSMUST00000174749 Efr3a protein_coding Interval_174543 chrX 157491288 157493019 + 0 NA promoter-TSS (ENSMUSG00000071708.11) protein_coding-promoter-TSS (ENSMUSG00000071708.11) -31292 ENSMUSG00000071708.11 ENSMUSG00000071708 ENSMUST00000123770 Sms protein_coding Interval_36726 chr12 52602512 52605022 + 0 NA promoter-TSS (ENSMUSG00000064663.1) snRNA-promoter-TSS (ENSMUSG00000064663.1) -21 ENSMUSG00000064663.1 ENSMUSG00000064663 ENSMUST00000082729 Gm24859 snRNA Interval_119029 chr4 135079786 135080843 + 0 NA Intergenic Intergenic 40133 ENSMUSG00000086884.1 ENSMUSG00000086884 ENSMUST00000146152 Gm16225 lincRNA Interval_41716 chr12 118239193 118239420 + 0 NA intron (ENSMUSG00000025323.10, intron 5 of 5) protein_coding-intron (ENSMUSG00000025323.10, intron 5 of 5) -4742 ENSMUSG00000113831.1 ENSMUSG00000113831 ENSMUST00000220671 Gm49602 lincRNA Interval_152832 chr7 138487965 138488827 + 0 NA Intergenic Intergenic -65846 ENSMUSG00000110037.1 ENSMUSG00000110037 ENSMUST00000209503 4930543N07Rik lincRNA Interval_125288 chr5 65966475 65968255 + 0 NA exon (ENSMUSG00000029205.12, exon 1 of 5) protein_coding-exon (ENSMUSG00000029205.12, exon 1 of 5) 3514 ENSMUSG00000107049.1 ENSMUSG00000107049 ENSMUST00000202931 Gm43771 TEC Interval_130102 chr5 124272965 124273377 + 0 NA intron (ENSMUSG00000038126.17, intron 15 of 22) protein_coding-intron (ENSMUSG00000038126.17, intron 14 of 21) 6741 ENSMUSG00000105382.1 ENSMUSG00000105382 ENSMUST00000200032 Gm43339 TEC Interval_173180 chrX 73906476 73907028 + 0 NA TTS (ENSMUSG00000031389.17) protein_coding-TTS (ENSMUSG00000031389.17) 4519 ENSMUSG00000031389.17 ENSMUSG00000031389 ENSMUST00000123283 Arhgap4 protein_coding Interval_134437 chr6 28693080 28694022 + 0 NA intron (ENSMUSG00000001424.14, intron 3 of 4) protein_coding-intron (ENSMUSG00000001424.14, intron 12 of 23) -102912 ENSMUSG00000103899.1 ENSMUSG00000103899 ENSMUST00000194243 Gm37940 TEC Interval_98700 chr2 154395597 154395820 + 0 NA intron (ENSMUSG00000027488.12, intron 2 of 7) protein_coding-intron (ENSMUSG00000027488.12, intron 2 of 7) 12272 ENSMUSG00000027488.12 ENSMUSG00000027488 ENSMUST00000133018 Snta1 protein_coding Interval_6870 chr1 120244043 120246523 + 0 NA intron (ENSMUSG00000026389.16, intron 2 of 5) protein_coding-intron (ENSMUSG00000026389.16, intron 1 of 4) 19972 ENSMUSG00000026389.16 ENSMUSG00000026389 ENSMUST00000112643 Steap3 protein_coding Interval_41241 chr12 112077548 112078089 + 0 NA Intergenic Intergenic -28861 ENSMUSG00000037686.6 ENSMUSG00000037686 ENSMUST00000222970 Aspg protein_coding Interval_123218 chr5 30704754 30704955 + 0 NA Intergenic Intergenic 37856 ENSMUSG00000029177.9 ENSMUSG00000029177 ENSMUST00000134372 Cenpa protein_coding Interval_101474 chr2 181644145 181645434 + 0 NA intron (ENSMUSG00000002455.14, intron 12 of 20) protein_coding-intron (ENSMUSG00000002455.14, intron 12 of 20) -12245 ENSMUSG00000108976.1 ENSMUSG00000108976 ENSMUST00000207856 Gm29797 protein_coding Interval_169510 chr9 98638047 98638394 + 0 NA Intergenic Intergenic -36575 ENSMUSG00000032459.9 ENSMUSG00000032459 ENSMUST00000190150 Mrps22 protein_coding Interval_104869 chr3 76739056 76739868 + 0 NA Intergenic Intergenic -82597 ENSMUSG00000103702.1 ENSMUSG00000103702 ENSMUST00000195775 Gm37290 processed_pseudogene Interval_1488 chr1 24075563 24076579 + 0 NA intron (ENSMUSG00000026153.15, intron 2 of 20) protein_coding-intron (ENSMUSG00000026153.15, intron 3 of 20) 10455 ENSMUSG00000026153.15 ENSMUSG00000026153 ENSMUST00000185525 Fam135a protein_coding Interval_121036 chr4 152349856 152352425 + 0 NA intron (ENSMUSG00000005045.16, intron 2 of 40) protein_coding-intron (ENSMUSG00000005045.16, intron 2 of 40) 2501 ENSMUSG00000085179.1 ENSMUSG00000085179 ENSMUST00000145163 Gm13645 processed_transcript Interval_170325 chr9 107072687 107073298 + 0 NA intron (ENSMUSG00000039716.12, intron 6 of 8) protein_coding-intron (ENSMUSG00000039716.12, intron 6 of 52) -23959 ENSMUSG00000064517.1 ENSMUSG00000064517 ENSMUST00000082583 Gm22454 snRNA Interval_143403 chr7 6424083 6425338 + 0 NA exon (ENSMUSG00000045929.8, exon 2 of 5) protein_coding-exon (ENSMUSG00000045929.8, exon 2 of 5) -13978 ENSMUSG00000090824.2 ENSMUSG00000090824 ENSMUST00000168341 Olfr1344 protein_coding Interval_54309 chr14 67536815 67538166 + 0 NA Intergenic Intergenic -29360 ENSMUSG00000077647.1 ENSMUSG00000077647 ENSMUST00000104459 Gm24981 snoRNA Interval_135068 chr6 35158728 35159092 + 0 NA Intergenic Intergenic -18706 ENSMUSG00000038759.15 ENSMUSG00000038759 ENSMUST00000200739 Nup205 protein_coding Interval_150362 chr7 109906690 109907115 + 0 NA TTS (ENSMUSG00000035901.14) protein_coding-TTS (ENSMUSG00000035901.14) -9346 ENSMUSG00000035901.14 ENSMUSG00000035901 ENSMUST00000151923 Dennd5a protein_coding Interval_156711 chr8 57517439 57518604 + 0 NA Intergenic Intergenic 2865 ENSMUSG00000109899.1 ENSMUSG00000109899 ENSMUST00000210821 Gm6012 processed_pseudogene Interval_86830 chr19 44200791 44201131 + 0 NA Intergenic Intergenic -8519 ENSMUSG00000037578.4 ENSMUSG00000037578 ENSMUST00000161357 Pkd2l1 protein_coding Interval_163047 chr9 14790333 14790670 + 0 NA TTS (ENSMUSG00000031928.15) protein_coding-TTS (ENSMUSG00000031928.15) 5493 ENSMUSG00000031928.15 ENSMUSG00000031928 ENSMUST00000136568 Mre11a protein_coding Interval_54813 chr14 75375951 75377865 + 0 NA intron (ENSMUSG00000115615.1, intron 2 of 4) lincRNA-intron (ENSMUSG00000115615.1, intron 2 of 4) 23538 ENSMUSG00000115615.1 ENSMUSG00000115615 ENSMUST00000227736 Gm49200 lincRNA Interval_50912 chr14 20727809 20728333 + 0 NA TTS (ENSMUSG00000039308.6) protein_coding-TTS (ENSMUSG00000039308.6) 2247 ENSMUSG00000039308.6 ENSMUSG00000039308 ENSMUST00000225320 Ndst2 protein_coding Interval_99557 chr2 163154850 163155105 + 0 NA intron (ENSMUSG00000086036.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000086036.1, intron 1 of 1) 1129 ENSMUSG00000086036.1 ENSMUSG00000086036 ENSMUST00000136371 Gm14254 lincRNA Interval_69667 chr16 95093317 95094476 + 0 NA Intergenic Intergenic -8508 ENSMUSG00000116667.1 ENSMUSG00000116667 ENSMUST00000232306 Gm49641 processed_pseudogene Interval_62782 chr15 96880354 96880716 + 0 NA Intergenic Intergenic 42870 ENSMUSG00000116202.1 ENSMUSG00000116202 ENSMUST00000229718 Rpl10a-ps3 processed_pseudogene Interval_45030 chr13 51615780 51616972 + 0 NA Intergenic Intergenic -28856 ENSMUSG00000062248.5 ENSMUSG00000062248 ENSMUST00000075853 Cks2 protein_coding Interval_108238 chr3 122854919 122856039 + 0 NA exon (ENSMUSG00000053965.10, exon 21 of 21) protein_coding-exon (ENSMUSG00000053965.10, exon 21 of 21) -6434 ENSMUSG00000106059.1 ENSMUSG00000106059 ENSMUST00000199220 Gm9364 processed_pseudogene Interval_40086 chr12 101066266 101066884 + 0 NA intron (ENSMUSG00000041846.15, intron 2 of 3) protein_coding-intron (ENSMUSG00000041846.15, intron 2 of 14) -15876 ENSMUSG00000097121.2 ENSMUSG00000097121 ENSMUST00000220889 D130020L05Rik antisense Interval_83796 chr19 4755627 4757257 + 0 NA promoter-TSS (ENSMUSG00000033760.17) protein_coding-promoter-TSS (ENSMUSG00000033760.17) -463 ENSMUSG00000033760.17 ENSMUSG00000033760 ENSMUST00000183332 Rbm4b protein_coding Interval_39347 chr12 86841534 86841848 + 0 NA Intergenic Intergenic 4776 ENSMUSG00000113555.1 ENSMUSG00000113555 ENSMUST00000222765 Gm10095 processed_pseudogene Interval_157858 chr8 75013546 75014438 + 0 NA intron (ENSMUSG00000034518.14, intron 6 of 11) protein_coding-intron (ENSMUSG00000034518.14, intron 5 of 10) 14123 ENSMUSG00000034518.14 ENSMUSG00000034518 ENSMUST00000129391 Hmgxb4 protein_coding Interval_13110 chr10 11477955 11478173 + 0 NA Intergenic Intergenic -27232 ENSMUSG00000111949.1 ENSMUSG00000111949 ENSMUST00000219639 Gm48679 processed_pseudogene Interval_32344 chr11 107078901 107079526 + 0 NA intron (ENSMUSG00000040481.17, intron 9 of 29) protein_coding-intron (ENSMUSG00000040481.17, intron 7 of 27) -31870 ENSMUSG00000040481.17 ENSMUSG00000040481 ENSMUST00000149486 Bptf protein_coding Interval_133558 chr6 6800121 6800564 + 0 NA Intergenic Intergenic -20600 ENSMUSG00000098963.1 ENSMUSG00000098963 ENSMUST00000183553 Gm27699 misc_RNA Interval_42147 chr13 9179933 9180620 + 0 NA Intergenic Intergenic -39395 ENSMUSG00000099428.1 ENSMUSG00000099428 ENSMUST00000191066 Gm28155 processed_pseudogene Interval_91985 chr2 52138515 52138715 + 0 NA intron (ENSMUSG00000026950.18, intron 164 of 164) protein_coding-intron (ENSMUSG00000026950.18, intron 73 of 73) 26482 ENSMUSG00000036202.16 ENSMUSG00000036202 ENSMUST00000152178 Rif1 protein_coding Interval_59083 chr15 43273160 43273481 + 0 NA intron (ENSMUSG00000022336.3, intron 2 of 11) protein_coding-intron (ENSMUSG00000022336.3, intron 3 of 12) 6462 ENSMUSG00000022336.3 ENSMUSG00000022336 ENSMUST00000226415 Eif3e protein_coding Interval_26742 chr11 60139292 60141398 + 0 NA promoter-TSS (ENSMUSG00000062115.15) protein_coding-promoter-TSS (ENSMUSG00000062115.15) 263 ENSMUSG00000062115.15 ENSMUSG00000062115 ENSMUST00000102688 Rai1 protein_coding Interval_122443 chr5 22724181 22725193 + 0 NA exon (ENSMUSG00000104913.1, exon 1 of 1) processed_pseudogene-exon (ENSMUSG00000104913.1, exon 1 of 1) 1481 ENSMUSG00000104913.1 ENSMUSG00000104913 ENSMUST00000198588 Gm6560 processed_pseudogene Interval_144331 chr7 24522524 24523154 + 0 NA Intergenic Intergenic 7003 ENSMUSG00000118544.1 ENSMUSG00000118544 ENSMUST00000238918 AC161166.1 unitary_pseudogene Interval_70396 chr17 9749853 9750143 + 0 NA TTS (ENSMUSG00000117264.1) processed_transcript-TTS (ENSMUSG00000117264.1) -23645 ENSMUSG00000117341.1 ENSMUSG00000117341 ENSMUST00000233960 Gm34684 lincRNA Interval_64838 chr16 16350361 16350680 + 0 NA intron (ENSMUSG00000115923.1, intron 1 of 1) protein_coding-intron (ENSMUSG00000022789.15, intron 1 of 17) 1317 ENSMUSG00000115923.1 ENSMUSG00000115923 ENSMUST00000229446 Gm49521 antisense Interval_152175 chr7 130401728 130401956 + 0 NA intron (ENSMUSG00000030850.17, intron 12 of 12) protein_coding-intron (ENSMUSG00000030850.17, intron 11 of 11) -47480 ENSMUSG00000082988.3 ENSMUSG00000082988 ENSMUST00000121836 Gm5903 processed_pseudogene Interval_48400 chr13 98779034 98779503 + 0 NA intron (ENSMUSG00000041685.16, intron 6 of 8) protein_coding-intron (ENSMUSG00000041685.16, intron 6 of 25) -21904 ENSMUSG00000114458.1 ENSMUSG00000114458 ENSMUST00000225263 Gm47551 antisense Interval_114566 chr4 82511753 82513627 + 0 NA intron (ENSMUSG00000087413.1, intron 1 of 1) antisense-intron (ENSMUSG00000087413.1, intron 1 of 1) 4674 ENSMUSG00000087413.1 ENSMUSG00000087413 ENSMUST00000139835 Gm11266 antisense Interval_70227 chr17 6849140 6849713 + 0 NA Intergenic Intergenic 40917 ENSMUSG00000116644.1 ENSMUSG00000116644 ENSMUST00000231816 4933426B08Rik lincRNA Interval_171196 chr9 115127635 115128273 + 0 NA intron (ENSMUSG00000040875.12, intron 1 of 4) protein_coding-intron (ENSMUSG00000040875.12, intron 2 of 9) 58104 ENSMUSG00000098127.1 ENSMUSG00000098127 ENSMUST00000183244 Gm4665 antisense Interval_29684 chr11 86022064 86023552 + 0 NA Intergenic Intergenic 72313 ENSMUSG00000081632.1 ENSMUSG00000081632 ENSMUST00000118790 Gm11443 processed_pseudogene Interval_144040 chr7 19141063 19141307 + 0 NA exon (ENSMUSG00000030407.2, exon 7 of 7) protein_coding-exon (ENSMUSG00000030407.2, exon 7 of 7) 6343 ENSMUSG00000030407.2 ENSMUSG00000030407 ENSMUST00000205979 Qpctl protein_coding Interval_20375 chr10 117171748 117172331 + 0 NA Intergenic Intergenic -5593 ENSMUSG00000112753.1 ENSMUSG00000112753 ENSMUST00000219785 4930423D24Rik lincRNA Interval_31527 chr11 101176241 101177181 + 0 NA intron (ENSMUSG00000017167.6, intron 1 of 23) protein_coding-intron (ENSMUSG00000017167.6, intron 1 of 23) -1268 ENSMUSG00000044052.3 ENSMUSG00000044052 ENSMUST00000062759 Ccr10 protein_coding Interval_168524 chr9 83040601 83041271 + 0 NA intron (ENSMUSG00000111839.1, intron 3 of 3) lincRNA-intron (ENSMUSG00000111839.1, intron 3 of 3) 32333 ENSMUSG00000111839.1 ENSMUSG00000111839 ENSMUST00000216894 Gm39383 lincRNA Interval_39999 chr12 100390495 100390751 + 0 NA intron (ENSMUSG00000033530.8, intron 7 of 7) protein_coding-intron (ENSMUSG00000033530.8, intron 9 of 19) -20871 ENSMUSG00000113917.1 ENSMUSG00000113917 ENSMUST00000220812 Gm48382 TEC Interval_72655 chr17 31335440 31335967 + 0 NA promoter-TSS (ENSMUSG00000024036.16) protein_coding-promoter-TSS (ENSMUSG00000024036.16) 2086 ENSMUSG00000024036.16 ENSMUSG00000024036 ENSMUST00000235220 Slc37a1 protein_coding Interval_142166 chr6 137751860 137752092 + 0 NA TTS (ENSMUSG00000030224.10) protein_coding-TTS (ENSMUSG00000030224.10) 6936 ENSMUSG00000030224.10 ENSMUSG00000030224 ENSMUST00000137235 Strap protein_coding Interval_159058 chr8 89166752 89167861 + 0 NA Intergenic Intergenic -20248 ENSMUSG00000094790.2 ENSMUSG00000094790 ENSMUST00000177870 Gm6625 processed_pseudogene Interval_100413 chr2 168883916 168884998 + 0 NA Intergenic Intergenic -2289 ENSMUSG00000077761.1 ENSMUSG00000077761 ENSMUST00000104573 Gm25214 snoRNA Interval_36800 chr12 54159922 54161987 + 0 NA Intergenic Intergenic 42906 ENSMUSG00000035105.5 ENSMUSG00000035105 ENSMUST00000039516 Egln3 protein_coding Interval_141454 chr6 128374908 128375662 + 0 NA promoter-TSS (ENSMUSG00000079304.5) protein_coding-promoter-TSS (ENSMUSG00000079304.5) -171 ENSMUSG00000079304.5 ENSMUSG00000079304 ENSMUST00000100926 Tex52 protein_coding Interval_112958 chr4 46462824 46464381 + 0 NA intron (ENSMUSG00000028333.10, intron 2 of 6) protein_coding-intron (ENSMUSG00000028333.10, intron 2 of 6) 12700 ENSMUSG00000028333.10 ENSMUSG00000028333 ENSMUST00000102926 Anp32b protein_coding Interval_145799 chr7 38837185 38837671 + 0 NA intron (ENSMUSG00000101855.1, intron 4 of 6) transcribed_processed_pseudogene-intron (ENSMUSG00000101855.1, intron 4 of 6) -16667 ENSMUSG00000101470.1 ENSMUSG00000101470 ENSMUST00000185932 Gm21129 unprocessed_pseudogene Interval_27062 chr11 62629422 62631323 + 0 NA intron (ENSMUSG00000046417.14, intron 1 of 3) protein_coding-intron (ENSMUSG00000046417.14, intron 1 of 3) -4332 ENSMUSG00000085170.1 ENSMUSG00000085170 ENSMUST00000142492 Lrrc75aos1 antisense Interval_166757 chr9 62460048 62461526 + 0 NA intron (ENSMUSG00000041729.15, intron 2 of 3) protein_coding-intron (ENSMUSG00000041729.15, intron 2 of 11) -11639 ENSMUSG00000041729.15 ENSMUSG00000041729 ENSMUST00000123379 Coro2b protein_coding Interval_158987 chr8 88472508 88472752 + 0 NA Intergenic Intergenic 81509 ENSMUSG00000110280.1 ENSMUSG00000110280 ENSMUST00000211701 Gm45497 processed_pseudogene Interval_170625 chr9 109606997 109607346 + 0 NA exon (ENSMUSG00000062275.7, exon 7 of 10) protein_coding-exon (ENSMUSG00000062275.7, exon 7 of 10) 18886 ENSMUSG00000062275.7 ENSMUSG00000062275 ENSMUST00000073962 Fbxw24 protein_coding Interval_149153 chr7 95408430 95410487 + 0 NA Intergenic Intergenic 32999 ENSMUSG00000065875.1 ENSMUSG00000065875 ENSMUST00000083941 Gm25684 snRNA Interval_14451 chr10 33952531 33952743 + 0 NA Intergenic Intergenic -17346 ENSMUSG00000111993.1 ENSMUSG00000111993 ENSMUST00000219391 Gm48018 transcribed_unprocessed_pseudogene Interval_5140 chr1 85995827 85996148 + 0 NA Intergenic Intergenic -9070 ENSMUSG00000100108.1 ENSMUSG00000100108 ENSMUST00000186560 Gm28100 lincRNA Interval_165503 chr9 48794850 48795444 + 0 NA intron (ENSMUSG00000066687.5, intron 2 of 6) protein_coding-intron (ENSMUSG00000066687.5, intron 2 of 6) 41075 ENSMUSG00000066687.5 ENSMUSG00000066687 ENSMUST00000216150 Zbtb16 protein_coding Interval_172353 chrX 13353303 13353545 + 0 NA Intergenic Intergenic 25254 ENSMUSG00000080818.4 ENSMUSG00000080818 ENSMUST00000118975 Gm9434 processed_pseudogene Interval_90701 chr2 32007035 32008813 + 0 NA intron (ENSMUSG00000001855.15, intron 18 of 35) protein_coding-intron (ENSMUSG00000001855.15, intron 18 of 35) 9420 ENSMUSG00000086192.1 ENSMUSG00000086192 ENSMUST00000141023 Gm13609 antisense Interval_71782 chr17 26054072 26055497 + 0 NA intron (ENSMUSG00000037098.18, intron 1 of 2) protein_coding-intron (ENSMUSG00000037098.18, intron 1 of 13) -18362 ENSMUSG00000118105.1 ENSMUSG00000118105 ENSMUST00000237108 Gm17814 processed_pseudogene Interval_173303 chrX 77608801 77609316 + 0 NA intron (ENSMUSG00000025246.13, intron 2 of 12) protein_coding-intron (ENSMUSG00000025246.13, intron 1 of 15) 29571 ENSMUSG00000088278.1 ENSMUSG00000088278 ENSMUST00000157653 Gm23121 snRNA Interval_90193 chr2 28930561 28931002 + 0 NA intron (ENSMUSG00000079502.8, intron 5 of 5) protein_coding-intron (ENSMUSG00000079502.8, intron 6 of 6) 3828 ENSMUSG00000083773.4 ENSMUSG00000083773 ENSMUST00000121658 Gm13394 processed_pseudogene Interval_115001 chr4 88333708 88333950 + 0 NA intron (ENSMUSG00000038368.16, intron 21 of 41) protein_coding-intron (ENSMUSG00000038368.16, intron 23 of 43) -66521 ENSMUSG00000038368.16 ENSMUSG00000038368 ENSMUST00000107147 Focad protein_coding Interval_164964 chr9 43461492 43462368 + 0 NA Intergenic Intergenic -7492 ENSMUSG00000100836.1 ENSMUSG00000100836 ENSMUST00000186146 Gm28215 lincRNA Interval_4437 chr1 74195776 74196506 + 0 NA Intergenic Intergenic -2906 ENSMUSG00000048480.5 ENSMUSG00000048480 ENSMUST00000053389 Cxcr1 protein_coding Interval_38041 chr12 74731503 74731925 + 0 NA Intergenic Intergenic -25986 ENSMUSG00000113562.1 ENSMUSG00000113562 ENSMUST00000222260 Gm47619 processed_pseudogene Interval_14305 chr10 30698228 30698552 + 0 NA intron (ENSMUSG00000039697.16, intron 3 of 5) protein_coding-intron (ENSMUSG00000039697.16, intron 5 of 15) -25163 ENSMUSG00000088600.1 ENSMUSG00000088600 ENSMUST00000157975 Gm24189 rRNA Interval_1495 chr1 24154875 24155105 + 0 NA Intergenic Intergenic 29715 ENSMUSG00000097670.1 ENSMUSG00000097670 ENSMUST00000180661 Gm26607 processed_pseudogene Interval_134092 chr6 19521527 19521766 + 0 NA Intergenic Intergenic -33696 ENSMUSG00000099149.1 ENSMUSG00000099149 ENSMUST00000183510 Mir6370 miRNA Interval_140337 chr6 116671051 116671592 + 0 NA intron (ENSMUSG00000042129.8, intron 1 of 4) protein_coding-intron (ENSMUSG00000042129.8, intron 1 of 10) 2477 ENSMUSG00000042129.8 ENSMUSG00000042129 ENSMUST00000204576 Rassf4 protein_coding Interval_107771 chr3 113807312 113807814 + 0 NA Intergenic Intergenic -47173 ENSMUSG00000106084.1 ENSMUSG00000106084 ENSMUST00000197877 Gm18163 processed_pseudogene Interval_115781 chr4 104128941 104129140 + 0 NA intron (ENSMUSG00000028519.16, intron 2 of 3) protein_coding-intron (ENSMUSG00000028519.16, intron 2 of 9) 188081 ENSMUSG00000081696.2 ENSMUSG00000081696 ENSMUST00000118427 Gm12717 processed_pseudogene Interval_50419 chr14 12821511 12823208 + 0 NA exon (ENSMUSG00000054423.14, exon 1 of 29) protein_coding-exon (ENSMUSG00000054423.14, exon 1 of 29) -45194 ENSMUSG00000021741.4 ENSMUSG00000021741 ENSMUST00000022260 Gm5457 processed_pseudogene Interval_3484 chr1 58768930 58770542 + 0 NA Intergenic Intergenic -15473 ENSMUSG00000100236.1 ENSMUSG00000100236 ENSMUST00000191399 Gm3841 processed_pseudogene Interval_114468 chr4 79883010 79883287 + 0 NA Intergenic Intergenic 8797 ENSMUSG00000084248.1 ENSMUSG00000084248 ENSMUST00000118621 Gm11409 processed_pseudogene Interval_159551 chr8 95400494 95400938 + 0 NA Intergenic Intergenic 30845 ENSMUSG00000031790.8 ENSMUSG00000031790 ENSMUST00000212235 Mmp15 protein_coding Interval_79860 chr18 35611770 35612713 + 0 NA intron (ENSMUSG00000037058.16, intron 1 of 1) protein_coding-intron (ENSMUSG00000037058.16, intron 2 of 3) 1957 ENSMUSG00000037058.16 ENSMUSG00000037058 ENSMUST00000237730 Paip2 protein_coding Interval_48996 chr13 106800159 106800378 + 0 NA intron (ENSMUSG00000042590.17, intron 5 of 5) protein_coding-intron (ENSMUSG00000042590.17, intron 29 of 29) 12198 ENSMUSG00000101308.1 ENSMUSG00000101308 ENSMUST00000187867 Gm28989 antisense Interval_76290 chr17 78773769 78774848 + 0 NA intron (ENSMUSG00000039414.10, intron 26 of 35) protein_coding-intron (ENSMUSG00000039414.10, intron 26 of 35) -5244 ENSMUSG00000039414.10 ENSMUSG00000039414 ENSMUST00000232917 Heatr5b protein_coding Interval_115652 chr4 101635076 101635312 + 0 NA exon (ENSMUSG00000028528.17, exon 16 of 19) protein_coding-exon (ENSMUSG00000028528.17, exon 16 of 19) -12599 ENSMUSG00000035212.14 ENSMUSG00000035212 ENSMUST00000106927 Leprot protein_coding Interval_76438 chr17 80196560 80197312 + 0 NA promoter-TSS (ENSMUSG00000088453.1) misc_RNA-promoter-TSS (ENSMUSG00000088453.1) -532 ENSMUSG00000088453.1 ENSMUSG00000088453 ENSMUST00000157828 Gm25706 misc_RNA Interval_105359 chr3 85469682 85470715 + 0 NA intron (ENSMUSG00000102805.5, intron 3 of 9) protein_coding-intron (ENSMUSG00000102805.5, intron 3 of 9) 2821 ENSMUSG00000080424.1 ENSMUSG00000080424 ENSMUST00000116774 Mir466k miRNA Interval_48332 chr13 98255018 98255714 + 0 NA intron (ENSMUSG00000041747.3, intron 5 of 5) protein_coding-intron (ENSMUSG00000041747.3, intron 6 of 12) -1209 ENSMUSG00000041747.3 ENSMUSG00000041747 ENSMUST00000224842 Utp15 protein_coding Interval_11499 chr1 182271009 182272601 + 0 NA Intergenic Intergenic 10419 ENSMUSG00000038633.5 ENSMUSG00000038633 ENSMUST00000133052 Degs1 protein_coding Interval_42700 chr13 18174156 18174463 + 0 NA intron (ENSMUSG00000009734.18, intron 3 of 5) protein_coding-intron (ENSMUSG00000009734.18, intron 3 of 7) -74107 ENSMUSG00000113470.1 ENSMUSG00000113470 ENSMUST00000220795 4930448F12Rik lincRNA Interval_84876 chr19 18557328 18557967 + 0 NA intron (ENSMUSG00000024725.13, intron 9 of 10) protein_coding-intron (ENSMUSG00000024725.13, intron 9 of 10) -23808 ENSMUSG00000080783.1 ENSMUSG00000080783 ENSMUST00000117398 Gm8250 processed_pseudogene Interval_60834 chr15 77039133 77039598 + 0 NA intron (ENSMUSG00000018893.15, intron 1 of 3) protein_coding-intron (ENSMUSG00000018893.15, intron 1 of 3) -5913 ENSMUSG00000033576.12 ENSMUSG00000033576 ENSMUST00000139304 Apol6 protein_coding Interval_160012 chr8 105736451 105736839 + 0 NA intron (ENSMUSG00000013150.15, intron 1 of 3) protein_coding-intron (ENSMUSG00000013150.15, intron 1 of 2) 21985 ENSMUSG00000013150.15 ENSMUSG00000013150 ENSMUST00000135959 Gfod2 protein_coding Interval_146504 chr7 46482360 46483003 + 0 NA intron (ENSMUSG00000030839.12, intron 3 of 3) protein_coding-intron (ENSMUSG00000030839.12, intron 10 of 10) 30099 ENSMUSG00000110316.1 ENSMUSG00000110316 ENSMUST00000211086 Gm45311 sense_intronic Interval_38830 chr12 83072261 83072518 + 0 NA intron (ENSMUSG00000021219.16, intron 11 of 14) protein_coding-intron (ENSMUSG00000021219.16, intron 11 of 14) 26485 ENSMUSG00000102029.1 ENSMUSG00000102029 ENSMUST00000187556 Gm29530 antisense Interval_88065 chr19 58759504 58760230 + 0 NA exon (ENSMUSG00000025091.4, exon 1 of 12) protein_coding-exon (ENSMUSG00000025091.4, exon 1 of 12) 148 ENSMUSG00000025091.4 ENSMUSG00000025091 ENSMUST00000026081 Pnliprp2 protein_coding Interval_54363 chr14 67932604 67934311 + 0 NA promoter-TSS (ENSMUSG00000044447.5) protein_coding-promoter-TSS (ENSMUSG00000044447.5) -73712 ENSMUSG00000098866.1 ENSMUSG00000098866 ENSMUST00000183732 Mir6539 miRNA Interval_135420 chr6 39269127 39270141 + 0 NA Intergenic Intergenic -3692 ENSMUSG00000089422.1 ENSMUSG00000089422 ENSMUST00000158797 Gm26008 snRNA Interval_159445 chr8 94785382 94785931 + 0 NA Intergenic Intergenic 13452 ENSMUSG00000031778.13 ENSMUSG00000031778 ENSMUST00000150307 Cx3cl1 protein_coding Interval_142907 chr6 146833475 146834434 + 0 NA TTS (ENSMUSG00000040187.15) protein_coding-TTS (ENSMUSG00000040187.15) 3430 ENSMUSG00000040187.15 ENSMUSG00000040187 ENSMUST00000204578 Arntl2 protein_coding Interval_86064 chr19 36182926 36183721 + 0 NA intron (ENSMUSG00000117998.1, intron 1 of 3) lincRNA-intron (ENSMUSG00000117998.1, intron 1 of 3) 743 ENSMUSG00000117998.1 ENSMUSG00000117998 ENSMUST00000236660 Gm32081 lincRNA Interval_20062 chr10 112928166 112929422 + 0 NA exon (ENSMUSG00000074748.3, exon 1 of 1) protein_coding-exon (ENSMUSG00000074748.3, exon 1 of 1) 207 ENSMUSG00000074748.3 ENSMUSG00000074748 ENSMUST00000165438 Atxn7l3b protein_coding Interval_139806 chr6 108868982 108869796 + 0 NA Intergenic Intergenic -12615 ENSMUSG00000107751.1 ENSMUSG00000107751 ENSMUST00000203838 Gm6749 processed_pseudogene Interval_124597 chr5 52151901 52152122 + 0 NA intron (ENSMUSG00000029169.11, intron 12 of 13) protein_coding-intron (ENSMUSG00000029169.11, intron 12 of 13) -9438 ENSMUSG00000106648.1 ENSMUSG00000106648 ENSMUST00000199653 Gm43176 TEC Interval_43608 chr13 34076921 34078572 + 0 NA intron (ENSMUSG00000058672.7, intron 1 of 3) protein_coding-intron (ENSMUSG00000058672.7, intron 1 of 3) 261 ENSMUSG00000058672.7 ENSMUSG00000058672 ENSMUST00000056427 Tubb2a protein_coding Interval_170051 chr9 104078663 104079869 + 0 NA intron (ENSMUSG00000090150.10, intron 5 of 13) protein_coding-intron (ENSMUSG00000090150.10, intron 5 of 19) -16361 ENSMUSG00000032557.13 ENSMUSG00000032557 ENSMUST00000214222 Uba5 protein_coding Interval_26550 chr11 58778283 58778478 + 0 NA exon (ENSMUSG00000056959.6, exon 1 of 1) protein_coding-exon (ENSMUSG00000056959.6, exon 1 of 1) -4572 ENSMUSG00000059504.7 ENSMUSG00000059504 ENSMUST00000076393 Olfr314 protein_coding Interval_41881 chr13 3862652 3863401 + 0 NA Intergenic Intergenic 8758 ENSMUSG00000099269.3 ENSMUSG00000099269 ENSMUST00000184271 Calm5 protein_coding Interval_27427 chr11 67558307 67559204 + 0 NA intron (ENSMUSG00000033066.16, intron 3 of 3) protein_coding-intron (ENSMUSG00000033066.16, intron 2 of 14) 18711 ENSMUSG00000087058.1 ENSMUSG00000087058 ENSMUST00000152963 Gm12301 antisense Interval_166588 chr9 61128860 61129920 + 0 NA Intergenic Intergenic -2359 ENSMUSG00000111354.1 ENSMUSG00000111354 ENSMUST00000214108 Gm33914 lincRNA Interval_166581 chr9 61069292 61070171 + 0 NA Intergenic Intergenic -14062 ENSMUSG00000111180.1 ENSMUSG00000111180 ENSMUST00000216861 Gm39348 lincRNA Interval_126380 chr5 87668920 87669086 + 0 NA exon (ENSMUSG00000070702.9, exon 4 of 12) protein_coding-exon (ENSMUSG00000070702.9, exon 4 of 12) 2795 ENSMUSG00000070702.9 ENSMUSG00000070702 ENSMUST00000197788 Csn1s1 protein_coding Interval_45153 chr13 52791168 52791396 + 0 NA Intergenic Intergenic -34077 ENSMUSG00000113737.1 ENSMUSG00000113737 ENSMUST00000223209 BB123696 lincRNA Interval_56593 chr14 120657069 120657460 + 0 NA intron (ENSMUSG00000115648.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000115648.1, intron 1 of 1) 24302 ENSMUSG00000115648.1 ENSMUSG00000115648 ENSMUST00000226920 Gm49008 lincRNA Interval_173840 chrX 105904020 105904295 + 0 NA intron (ENSMUSG00000031229.16, intron 1 of 6) protein_coding-intron (ENSMUSG00000031229.16, intron 1 of 5) -28852 ENSMUSG00000031229.16 ENSMUSG00000031229 ENSMUST00000126345 Atrx protein_coding Interval_108719 chr3 130701954 130702895 + 0 NA intron (ENSMUSG00000041084.8, intron 3 of 3) protein_coding-intron (ENSMUSG00000041084.8, intron 3 of 3) 3525 ENSMUSG00000105466.1 ENSMUSG00000105466 ENSMUST00000197053 Gm42998 TEC Interval_155982 chr8 41425784 41427453 + 0 NA Intergenic Intergenic -13696 ENSMUSG00000031590.8 ENSMUSG00000031590 ENSMUST00000210873 Frg1 protein_coding Interval_72952 chr17 33786255 33786619 + 0 NA promoter-TSS (ENSMUSG00000092602.1) lincRNA-promoter-TSS (ENSMUSG00000092602.1) -713 ENSMUSG00000092602.1 ENSMUSG00000092602 ENSMUST00000173637 4931413I07Rik lincRNA Interval_4550 chr1 74959891 74960265 + 0 NA Intergenic Intergenic 5826 ENSMUSG00000103145.1 ENSMUSG00000103145 ENSMUST00000194616 Gm37744 TEC Interval_57542 chr15 12222082 12222670 + 0 NA promoter-TSS (ENSMUSG00000039458.15) protein_coding-promoter-TSS (ENSMUSG00000039458.15) 17272 ENSMUSG00000039458.15 ENSMUSG00000039458 ENSMUST00000173071 Mtmr12 protein_coding Interval_45685 chr13 56900081 56900647 + 0 NA Intergenic Intergenic -4627 ENSMUSG00000021541.14 ENSMUSG00000021541 ENSMUST00000173817 Trpc7 protein_coding Interval_151065 chr7 118257240 118257508 + 0 NA Intergenic Intergenic 13509 ENSMUSG00000055159.7 ENSMUSG00000055159 ENSMUST00000138180 4930583K01Rik bidirectional_promoter_lncRNA Interval_107688 chr3 111070699 111071266 + 0 NA Intergenic Intergenic -37518 ENSMUSG00000106487.1 ENSMUSG00000106487 ENSMUST00000199816 Gm43407 processed_pseudogene Interval_144969 chr7 29168553 29170776 + 0 NA promoter-TSS (ENSMUSG00000031493.10) protein_coding-promoter-TSS (ENSMUSG00000031493.10) -743 ENSMUSG00000031493.10 ENSMUSG00000031493 ENSMUST00000208330 Ggn protein_coding Interval_124284 chr5 43562669 43562874 + 0 NA intron (ENSMUSG00000087290.2, intron 4 of 4) protein_coding-intron (ENSMUSG00000061535.11, intron 1 of 2) -13050 ENSMUSG00000104912.1 ENSMUSG00000104912 ENSMUST00000197583 Gm43023 TEC Interval_52091 chr14 35653922 35654172 + 0 NA Intergenic Intergenic 84094 ENSMUSG00000098696.1 ENSMUSG00000098696 ENSMUST00000184321 Gm27617 misc_RNA Interval_97229 chr2 132389697 132390057 + 0 NA Intergenic Intergenic -4456 ENSMUSG00000050558.13 ENSMUSG00000050558 ENSMUST00000145995 Prokr2 protein_coding Interval_171737 chr9 120601622 120604205 + 0 NA Intergenic Intergenic 11835 ENSMUSG00000110760.1 ENSMUSG00000110760 ENSMUST00000216606 Gm39456 lincRNA Interval_95351 chr2 106844131 106844673 + 0 NA intron (ENSMUSG00000016386.15, intron 4 of 6) protein_coding-intron (ENSMUSG00000016386.15, intron 4 of 6) 35066 ENSMUSG00000105450.1 ENSMUSG00000105450 ENSMUST00000199948 Gm22813 scaRNA Interval_91584 chr2 44075043 44075308 + 0 NA intron (ENSMUSG00000049744.15, intron 1 of 2) protein_coding-intron (ENSMUSG00000049744.15, intron 8 of 13) -9851 ENSMUSG00000085089.1 ENSMUSG00000085089 ENSMUST00000139948 Arhgap15os antisense Interval_131228 chr5 135916181 135916591 + 0 NA intron (ENSMUSG00000051391.9, intron 1 of 2) protein_coding-intron (ENSMUSG00000051391.9, intron 1 of 1) 18168 ENSMUSG00000051391.9 ENSMUSG00000051391 ENSMUST00000126192 Ywhag protein_coding Interval_28323 chr11 75198051 75198351 + 0 NA intron (ENSMUSG00000045287.6, intron 1 of 1) protein_coding-intron (ENSMUSG00000045287.6, intron 1 of 1) 4418 ENSMUSG00000045287.6 ENSMUSG00000045287 ENSMUST00000102514 Rtn4rl1 protein_coding Interval_91622 chr2 44889406 44889939 + 0 NA intron (ENSMUSG00000036890.13, intron 1 of 5) protein_coding-intron (ENSMUSG00000036890.13, intron 1 of 4) -27397 ENSMUSG00000036890.13 ENSMUSG00000036890 ENSMUST00000133442 Gtdc1 protein_coding Interval_50763 chr14 19304043 19304549 + 0 NA Intergenic Intergenic -11767 ENSMUSG00000114877.1 ENSMUSG00000114877 ENSMUST00000224681 Gm33022 unprocessed_pseudogene Interval_54947 chr14 76431806 76432119 + 0 NA intron (ENSMUSG00000022010.19, intron 3 of 4) protein_coding-intron (ENSMUSG00000022010.19, intron 1 of 2) 13134 ENSMUSG00000022010.19 ENSMUSG00000022010 ENSMUST00000133224 Tsc22d1 protein_coding Interval_116725 chr4 116876674 116878223 + 0 NA promoter-TSS (ENSMUSG00000033948.3) protein_coding-promoter-TSS (ENSMUSG00000033948.3) 72 ENSMUSG00000033948.3 ENSMUSG00000033948 ENSMUST00000044823 Zswim5 protein_coding Interval_30455 chr11 94483922 94484189 + 0 NA TTS (ENSMUSG00000020867.13) protein_coding-TTS (ENSMUSG00000020867.13) 357 ENSMUSG00000020867.13 ENSMUSG00000020867 ENSMUST00000125310 Spata20 protein_coding Interval_163124 chr9 15439493 15439863 + 0 NA TTS (ENSMUSG00000111508.1) processed_pseudogene-TTS (ENSMUSG00000111508.1) 793 ENSMUSG00000111508.1 ENSMUSG00000111508 ENSMUST00000214794 Gm48634 processed_pseudogene Interval_151355 chr7 121604245 121604732 + 0 NA intron (ENSMUSG00000108811.1, intron 1 of 2) antisense-intron (ENSMUSG00000108811.1, intron 1 of 2) 14585 ENSMUSG00000108409.1 ENSMUSG00000108409 ENSMUST00000205586 1700025J12Rik lincRNA Interval_64969 chr16 17601156 17601578 + 0 NA Intergenic Intergenic -17996 ENSMUSG00000005899.14 ENSMUSG00000005899 ENSMUST00000232270 Smpd4 protein_coding Interval_104916 chr3 78986788 78987217 + 0 NA Intergenic Intergenic 7080 ENSMUSG00000077487.1 ENSMUSG00000077487 ENSMUST00000104299 Gm23440 snoRNA Interval_110118 chr3 153452333 153453839 + 0 NA intron (ENSMUSG00000052544.9, intron 1 of 2) protein_coding-intron (ENSMUSG00000052544.9, intron 1 of 2) 21568 ENSMUSG00000104964.1 ENSMUSG00000104964 ENSMUST00000196286 4930597L12Rik TEC Interval_83135 chr18 81949527 81949824 + 0 NA intron (ENSMUSG00000117923.1, intron 4 of 5) lincRNA-intron (ENSMUSG00000117923.1, intron 4 of 5) 15768 ENSMUSG00000117923.1 ENSMUSG00000117923 ENSMUST00000236553 Gm30593 lincRNA Interval_118713 chr4 133322860 133323594 + 0 NA promoter-TSS (ENSMUSG00000037622.14) protein_coding-promoter-TSS (ENSMUSG00000037622.14) -997 ENSMUSG00000037622.14 ENSMUSG00000037622 ENSMUST00000140976 Wdtc1 protein_coding Interval_102831 chr3 31790483 31790791 + 0 NA Intergenic Intergenic -100052 ENSMUSG00000103499.5 ENSMUSG00000103499 ENSMUST00000192046 Gm6558 transcribed_unprocessed_pseudogene Interval_171432 chr9 118284765 118286033 + 0 NA Intergenic Intergenic -2387 ENSMUSG00000084608.1 ENSMUSG00000084608 ENSMUST00000122659 Gm22198 misc_RNA Interval_159964 chr8 105453215 105453474 + 0 NA intron (ENSMUSG00000054320.16, intron 4 of 8) protein_coding-intron (ENSMUSG00000054320.16, intron 6 of 10) 16066 ENSMUSG00000014846.12 ENSMUSG00000014846 ENSMUST00000176419 Tppp3 protein_coding Interval_63694 chr15 102909732 102911062 + 0 NA Intergenic Intergenic -10706 ENSMUSG00000001655.6 ENSMUSG00000001655 ENSMUST00000001700 Hoxc13 protein_coding Interval_80203 chr18 38216338 38217473 + 0 NA intron (ENSMUSG00000089983.2, intron 1 of 1) lincRNA-intron (ENSMUSG00000089983.2, intron 1 of 1) 3201 ENSMUSG00000089983.2 ENSMUSG00000089983 ENSMUST00000236988 2010320O07Rik lincRNA Interval_5333 chr1 87673689 87674508 + 0 NA intron (ENSMUSG00000026288.14, intron 5 of 26) protein_coding-intron (ENSMUSG00000026288.14, intron 5 of 26) -2141 ENSMUSG00000026288.14 ENSMUSG00000026288 ENSMUST00000163548 Inpp5d protein_coding Interval_164695 chr9 40642266 40645158 + 0 NA Intergenic Intergenic 25395 ENSMUSG00000110992.1 ENSMUSG00000110992 ENSMUST00000216204 Gm35371 lincRNA Interval_73161 chr17 35185845 35187360 + 0 NA exon (ENSMUSG00000073412.6, exon 3 of 4) protein_coding-exon (ENSMUSG00000073412.6, exon 3 of 4) 1837 ENSMUSG00000073412.6 ENSMUSG00000073412 ENSMUST00000097336 Lst1 protein_coding Interval_96037 chr2 119337461 119338579 + 0 NA Intergenic Intergenic 9482 ENSMUSG00000027314.6 ENSMUSG00000027314 ENSMUST00000127102 Dll4 protein_coding Interval_92529 chr2 60342653 60344027 + 0 NA intron (ENSMUSG00000026980.15, intron 13 of 34) protein_coding-intron (ENSMUSG00000026980.15, intron 13 of 34) 5152 ENSMUSG00000086196.7 ENSMUSG00000086196 ENSMUST00000124654 Gm13571 antisense Interval_103166 chr3 36165627 36165859 + 0 NA exon (ENSMUSG00000033883.11, exon 3 of 3) protein_coding-exon (ENSMUSG00000033883.11, exon 3 of 3) 14581 ENSMUSG00000033883.11 ENSMUSG00000033883 ENSMUST00000165956 Zfp267 protein_coding Interval_96216 chr2 120563354 120564268 + 0 NA promoter-TSS (ENSMUSG00000027288.16) protein_coding-promoter-TSS (ENSMUSG00000027288.16) -3912 ENSMUSG00000027287.14 ENSMUSG00000027287 ENSMUST00000130759 Snap23 protein_coding Interval_122598 chr5 24100088 24101299 + 0 NA promoter-TSS (ENSMUSG00000028986.12) protein_coding-promoter-TSS (ENSMUSG00000028986.12) 87 ENSMUSG00000028986.12 ENSMUSG00000028986 ENSMUST00000199530 Klhl7 protein_coding Interval_117114 chr4 119643044 119643332 + 0 NA Intergenic Intergenic 5484 ENSMUSG00000023247.2 ENSMUSG00000023247 ENSMUST00000024015 Guca2a protein_coding Interval_57814 chr15 21312130 21312419 + 0 NA intron (ENSMUSG00000040452.9, intron 3 of 12) protein_coding-intron (ENSMUSG00000040452.9, intron 2 of 11) 132117 ENSMUSG00000103296.1 ENSMUSG00000103296 ENSMUST00000195204 Gm38234 TEC Interval_125743 chr5 73788582 73789078 + 0 NA Intergenic Intergenic -124066 ENSMUSG00000107027.1 ENSMUSG00000107027 ENSMUST00000202487 1700019F05Rik lincRNA Interval_4328 chr1 72741295 72741933 + 0 NA Intergenic Intergenic 30300 ENSMUSG00000046330.10 ENSMUSG00000046330 ENSMUST00000211963 Rpl37a protein_coding Interval_112752 chr4 44620228 44620465 + 0 NA intron (ENSMUSG00000014030.15, intron 1 of 5) protein_coding-intron (ENSMUSG00000014030.15, intron 6 of 9) -12778 ENSMUSG00000092761.1 ENSMUSG00000092761 ENSMUST00000175020 Mir5120 miRNA Interval_61964 chr15 85536937 85537988 + 0 NA exon (ENSMUSG00000022382.15, exon 4 of 4) protein_coding-exon (ENSMUSG00000022382.15, exon 4 of 4) 26650 ENSMUSG00000063548.3 ENSMUSG00000063548 ENSMUST00000079690 Gm4825 processed_pseudogene Interval_126449 chr5 88642285 88642992 + 0 NA TTS (ENSMUSG00000029291.11) protein_coding-TTS (ENSMUSG00000029291.11) -4053 ENSMUSG00000029291.11 ENSMUSG00000029291 ENSMUST00000199956 Rufy3 protein_coding Interval_44925 chr13 50031740 50032319 + 0 NA Intergenic Intergenic 18976 ENSMUSG00000113312.1 ENSMUSG00000113312 ENSMUST00000220549 Gm48052 processed_pseudogene Interval_149984 chr7 104206815 104207178 + 0 NA exon (ENSMUSG00000081859.3, exon 2 of 2) polymorphic_pseudogene-exon (ENSMUSG00000081859.3, exon 2 of 2) 3559 ENSMUSG00000081859.3 ENSMUSG00000081859 ENSMUST00000121432 Olfr650-ps1 polymorphic_pseudogene Interval_171627 chr9 119664293 119664517 + 0 NA intron (ENSMUSG00000034533.10, intron 8 of 11) protein_coding-intron (ENSMUSG00000034533.10, intron 11 of 27) 23634 ENSMUSG00000034533.10 ENSMUSG00000034533 ENSMUST00000213401 Scn10a protein_coding Interval_152031 chr7 128433410 128433698 + 0 NA Intergenic Intergenic -14796 ENSMUSG00000030844.11 ENSMUSG00000030844 ENSMUST00000147840 Rgs10 protein_coding Interval_40386 chr12 104562158 104563302 + 0 NA Intergenic Intergenic 42762 ENSMUSG00000112954.1 ENSMUSG00000112954 ENSMUST00000222329 Gm49732 lincRNA Interval_47670 chr13 90993201 90994045 + 0 NA intron (ENSMUSG00000021619.6, intron 4 of 6) protein_coding-intron (ENSMUSG00000021619.6, intron 5 of 7) 70406 ENSMUSG00000049517.8 ENSMUSG00000049517 ENSMUST00000224430 Rps23 protein_coding Interval_6896 chr1 120468470 120469518 + 0 NA Intergenic Intergenic 33189 ENSMUSG00000101275.1 ENSMUSG00000101275 ENSMUST00000186237 1700012E03Rik lincRNA Interval_47403 chr13 83572048 83572292 + 0 NA promoter-TSS (ENSMUSG00000005583.16) protein_coding-promoter-TSS (ENSMUSG00000005583.16) 47879 ENSMUSG00000005583.16 ENSMUSG00000005583 ENSMUST00000197145 Mef2c protein_coding Interval_23999 chr11 29305356 29305566 + 0 NA Intergenic Intergenic 28861 ENSMUSG00000083298.1 ENSMUSG00000083298 ENSMUST00000119263 Gm12085 processed_pseudogene Interval_18442 chr10 86018878 86019246 + 0 NA Intergenic Intergenic -2957 ENSMUSG00000001786.14 ENSMUSG00000001786 ENSMUST00000130383 Fbxo7 protein_coding Interval_172224 chrX 10577298 10577528 + 0 NA intron (ENSMUSG00000058254.12, intron 1 of 6) protein_coding-intron (ENSMUSG00000058254.12, intron 1 of 7) 67365 ENSMUSG00000088404.1 ENSMUSG00000088404 ENSMUST00000157779 Gm25885 rRNA Interval_170440 chr9 108001930 108003137 + 0 NA promoter-TSS (ENSMUSG00000032594.11) protein_coding-promoter-TSS (ENSMUSG00000032594.11) -101 ENSMUSG00000032594.11 ENSMUSG00000032594 ENSMUST00000176613 Ip6k1 protein_coding Interval_38590 chr12 80315280 80315661 + 0 NA Intergenic Intergenic 56027 ENSMUSG00000112336.1 ENSMUSG00000112336 ENSMUST00000218666 Gm47766 antisense Interval_21082 chr10 125994778 125995439 + 0 NA TTS (ENSMUSG00000020105.9) protein_coding-TTS (ENSMUSG00000020105.9) 28874 ENSMUSG00000020105.9 ENSMUSG00000020105 ENSMUST00000219974 Lrig3 protein_coding Interval_152454 chr7 133090422 133091465 + 0 NA intron (ENSMUSG00000030970.16, intron 1 of 6) protein_coding-intron (ENSMUSG00000030970.16, intron 1 of 10) 29328 ENSMUSG00000110282.1 ENSMUSG00000110282 ENSMUST00000209529 B930086L07Rik TEC Interval_112313 chr4 40294471 40295092 + 0 NA Intergenic Intergenic -15372 ENSMUSG00000071014.10 ENSMUSG00000071014 ENSMUST00000108108 Ndufb6 protein_coding Interval_63332 chr15 100384392 100384678 + 0 NA TTS (ENSMUSG00000093789.3) protein_coding-TTS (ENSMUSG00000093789.3) 19990 ENSMUSG00000093550.7 ENSMUSG00000093550 ENSMUST00000177211 Higd1c protein_coding Interval_21203 chr10 127194833 127196768 + 0 NA promoter-TSS (ENSMUSG00000040415.15) protein_coding-promoter-TSS (ENSMUSG00000040415.15) -72 ENSMUSG00000040415.15 ENSMUSG00000040415 ENSMUST00000125254 Dtx3 protein_coding Interval_60301 chr15 72651638 72652539 + 0 NA intron (ENSMUSG00000047921.17, intron 20 of 21) protein_coding-intron (ENSMUSG00000047921.17, intron 20 of 21) 63805 ENSMUSG00000116088.1 ENSMUSG00000116088 ENSMUST00000230426 Gm49460 antisense Interval_44069 chr13 40709046 40710081 + 0 NA Intergenic Intergenic 5558 ENSMUSG00000055732.1 ENSMUSG00000055732 ENSMUST00000069457 Gm9979 lincRNA Interval_79772 chr18 35044920 35046324 + 0 NA intron (ENSMUSG00000118380.1, intron 3 of 3) processed_transcript-intron (ENSMUSG00000118380.1, intron 4 of 5) 42001 ENSMUSG00000117727.1 ENSMUSG00000117727 ENSMUST00000238134 Gm3587 lincRNA Interval_60703 chr15 76257227 76257777 + 0 NA Intergenic Intergenic 9311 ENSMUSG00000098625.1 ENSMUSG00000098625 ENSMUST00000184745 Mir6953 miRNA Interval_15329 chr10 44526905 44530024 + 0 NA promoter-TSS (ENSMUSG00000038151.13) protein_coding-promoter-TSS (ENSMUSG00000038151.13) -61464 ENSMUSG00000111730.1 ENSMUSG00000111730 ENSMUST00000213337 Gm5950 processed_pseudogene Interval_139724 chr6 108139952 108140724 + 0 NA exon (ENSMUSG00000091845.1, exon 1 of 1) processed_pseudogene-exon (ENSMUSG00000091845.1, exon 1 of 1) 171 ENSMUSG00000091845.1 ENSMUSG00000091845 ENSMUST00000025040 Rpl36-ps12 processed_pseudogene Interval_83066 chr18 80992078 80993087 + 0 NA Intergenic Intergenic 4801 ENSMUSG00000118235.1 ENSMUSG00000118235 ENSMUST00000236431 Gm7503 processed_pseudogene Interval_10522 chr1 171455370 171455640 + 0 NA intron (ENSMUSG00000038235.4, intron 1 of 2) protein_coding-intron (ENSMUSG00000038235.4, intron 1 of 9) -7345 ENSMUSG00000038235.4 ENSMUSG00000038235 ENSMUST00000155913 F11r protein_coding Interval_8419 chr1 139064269 139064598 + 0 NA TTS (ENSMUSG00000056268.15) protein_coding-TTS (ENSMUSG00000056268.15) -5780 ENSMUSG00000105936.1 ENSMUSG00000105936 ENSMUST00000196474 Gm43544 TEC Interval_52392 chr14 45558239 45559469 + 0 NA promoter-TSS (ENSMUSG00000115702.1) transcribed_processed_pseudogene-promoter-TSS (ENSMUSG00000115702.1) -681 ENSMUSG00000115702.1 ENSMUSG00000115702 ENSMUST00000226429 Gm5206 transcribed_processed_pseudogene Interval_40993 chr12 110485158 110486337 + 0 NA promoter-TSS (ENSMUSG00000017843.14) protein_coding-promoter-TSS (ENSMUSG00000017843.14) -131 ENSMUSG00000113585.1 ENSMUSG00000113585 ENSMUST00000222863 Gm19605 processed_transcript Interval_94572 chr2 92367578 92367797 + 0 NA promoter-TSS (ENSMUSG00000040434.16) protein_coding-promoter-TSS (ENSMUSG00000040434.16) -1166 ENSMUSG00000040434.16 ENSMUSG00000040434 ENSMUST00000124428 Large2 protein_coding Interval_2932 chr1 51148717 51149146 + 0 NA exon (ENSMUSG00000099924.1, exon 1 of 1) sense_intronic-exon (ENSMUSG00000099924.1, exon 1 of 1) 622 ENSMUSG00000099924.1 ENSMUSG00000099924 ENSMUST00000187777 Gm28320 sense_intronic Interval_31012 chr11 97702523 97703809 + 0 NA promoter-TSS (ENSMUSG00000069744.7) protein_coding-promoter-TSS (ENSMUSG00000069744.7) -268 ENSMUSG00000069744.7 ENSMUSG00000069744 ENSMUST00000129197 Psmb3 protein_coding Interval_83824 chr19 4906145 4907419 + 0 NA promoter-TSS (ENSMUSG00000006464.9) protein_coding-promoter-TSS (ENSMUSG00000006464.9) -154 ENSMUSG00000006464.9 ENSMUSG00000006464 ENSMUST00000237638 Bbs1 protein_coding Interval_125691 chr5 73279473 73279912 + 0 NA intron (ENSMUSG00000100175.6, intron 1 of 2) lincRNA-intron (ENSMUSG00000100175.6, intron 1 of 2) 4489 ENSMUSG00000100175.6 ENSMUSG00000100175 ENSMUST00000191524 1700025M24Rik lincRNA Interval_28258 chr11 74723206 74724834 + 0 NA promoter-TSS (ENSMUSG00000020745.15) protein_coding-promoter-TSS (ENSMUSG00000020745.15) 298 ENSMUSG00000020745.15 ENSMUSG00000020745 ENSMUST00000155493 Pafah1b1 protein_coding Interval_54579 chr14 70780669 70781737 + 0 NA Intergenic Intergenic 5324 ENSMUSG00000022102.13 ENSMUSG00000022102 ENSMUST00000164691 Dok2 protein_coding Interval_98372 chr2 151910968 151911569 + 0 NA promoter-TSS (ENSMUSG00000027460.7) protein_coding-promoter-TSS (ENSMUSG00000027460.7) 58 ENSMUSG00000027460.7 ENSMUSG00000027460 ENSMUST00000028955 Angpt4 protein_coding Interval_29959 chr11 88383380 88383602 + 0 NA intron (ENSMUSG00000069769.13, intron 5 of 5) protein_coding-intron (ENSMUSG00000069769.13, intron 10 of 13) 27200 ENSMUSG00000085246.1 ENSMUSG00000085246 ENSMUST00000143208 Gm15893 antisense Interval_63772 chr15 103339191 103341077 + 0 NA promoter-TSS (ENSMUSG00000000552.10) protein_coding-promoter-TSS (ENSMUSG00000000552.10) 10391 ENSMUSG00000098419.1 ENSMUSG00000098419 ENSMUST00000183535 Mir6963 miRNA Interval_43252 chr13 27445983 27446182 + 0 NA Intergenic Intergenic -7444 ENSMUSG00000021345.16 ENSMUSG00000021345 ENSMUST00000110355 Prl8a6 protein_coding Interval_58370 chr15 33849452 33849943 + 0 NA Intergenic Intergenic 18249 ENSMUSG00000115318.1 ENSMUSG00000115318 ENSMUST00000227474 Gm49089 TEC Interval_35613 chr12 25485769 25486157 + 0 NA Intergenic Intergenic 167778 ENSMUSG00000113669.1 ENSMUSG00000113669 ENSMUST00000221270 Gm36723 lincRNA Interval_60278 chr15 72050540 72051899 + 0 NA Intergenic Intergenic -96820 ENSMUSG00000079022.10 ENSMUSG00000079022 ENSMUST00000162081 Col22a1 protein_coding Interval_98270 chr2 150684546 150684910 + 0 NA intron (ENSMUSG00000033080.9, intron 3 of 4) protein_coding-intron (ENSMUSG00000033080.9, intron 3 of 4) 4632 ENSMUSG00000033080.9 ENSMUSG00000033080 ENSMUST00000046095 Vsx1 protein_coding Interval_18697 chr10 89407840 89408219 + 0 NA TTS (ENSMUSG00000074802.11) protein_coding-TTS (ENSMUSG00000074802.11) 25813 ENSMUSG00000074802.11 ENSMUSG00000074802 ENSMUST00000219073 Gas2l3 protein_coding Interval_29812 chr11 87005168 87005380 + 0 NA Intergenic Intergenic -8011 ENSMUSG00000088816.1 ENSMUSG00000088816 ENSMUST00000158191 Gm22387 scaRNA Interval_52727 chr14 49128668 49129349 + 0 NA Intergenic Intergenic -6306 ENSMUSG00000115737.1 ENSMUSG00000115737 ENSMUST00000227008 Rpl19-ps3 transcribed_processed_pseudogene Interval_57861 chr15 23417653 23418373 + 0 NA intron (ENSMUSG00000040420.15, intron 7 of 8) protein_coding-intron (ENSMUSG00000040420.15, intron 8 of 9) -3556 ENSMUSG00000115560.1 ENSMUSG00000115560 ENSMUST00000226326 Gm49191 antisense Interval_32477 chr11 107741220 107741507 + 0 NA intron (ENSMUSG00000020723.3, intron 1 of 2) protein_coding-intron (ENSMUSG00000020723.3, intron 2 of 3) 716 ENSMUSG00000020723.3 ENSMUSG00000020723 ENSMUST00000134076 Cacng4 protein_coding Interval_32962 chr11 113382418 113383401 + 0 NA intron (ENSMUSG00000041654.15, intron 5 of 5) protein_coding-intron (ENSMUSG00000041654.15, intron 6 of 10) -85068 ENSMUSG00000078251.2 ENSMUSG00000078251 ENSMUST00000105048 Gm16487 pseudogene Interval_17015 chr10 70442329 70443620 + 0 NA intron (ENSMUSG00000043259.15, intron 2 of 10) protein_coding-intron (ENSMUSG00000043259.15, intron 1 of 13) 2268 ENSMUSG00000043259.15 ENSMUSG00000043259 ENSMUST00000062883 Fam13c protein_coding Interval_69556 chr16 94216427 94217251 + 0 NA intron (ENSMUSG00000040820.16, intron 2 of 6) protein_coding-intron (ENSMUSG00000040820.16, intron 5 of 9) 6173 ENSMUSG00000115044.1 ENSMUSG00000115044 ENSMUST00000227277 Gm48978 TEC Interval_43626 chr13 34193766 34193983 + 0 NA promoter-TSS (ENSMUSG00000038267.15) protein_coding-promoter-TSS (ENSMUSG00000038267.15) 30910 ENSMUSG00000071451.10 ENSMUSG00000071451 ENSMUST00000147632 Psmg4 protein_coding Interval_136155 chr6 51552537 51554538 + 0 NA intron (ENSMUSG00000038301.15, intron 1 of 6) protein_coding-intron (ENSMUSG00000038301.15, intron 1 of 6) 9014 ENSMUSG00000038301.15 ENSMUSG00000038301 ENSMUST00000149024 Snx10 protein_coding Interval_44148 chr13 41238361 41239254 + 0 NA intron (ENSMUSG00000114247.1, intron 3 of 6) lincRNA-intron (ENSMUSG00000114247.1, intron 3 of 6) 2462 ENSMUSG00000114247.1 ENSMUSG00000114247 ENSMUST00000224417 Gm32063 lincRNA Interval_148173 chr7 79631735 79632395 + 0 NA Intergenic Intergenic -28389 ENSMUSG00000108318.1 ENSMUSG00000108318 ENSMUST00000206746 Gm45170 TEC Interval_86809 chr19 44001964 44002201 + 0 NA Intergenic Intergenic 27126 ENSMUSG00000025197.9 ENSMUSG00000025197 ENSMUST00000211830 Cyp2c23 protein_coding Interval_87979 chr19 57541747 57542083 + 0 NA intron (ENSMUSG00000117770.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000117770.1, intron 1 of 1) 2308 ENSMUSG00000117770.1 ENSMUSG00000117770 ENSMUST00000235373 Gm50285 lincRNA Interval_122118 chr5 17405619 17405913 + 0 NA Intergenic Intergenic 25193 ENSMUSG00000090750.1 ENSMUSG00000090750 ENSMUST00000165985 Gm21999 unprocessed_pseudogene Interval_20328 chr10 116913552 116914068 + 0 NA intron (ENSMUSG00000064181.6, intron 8 of 10) protein_coding-intron (ENSMUSG00000064181.6, intron 7 of 9) -16891 ENSMUSG00000034057.8 ENSMUSG00000034057 ENSMUST00000048229 Myrfl protein_coding Interval_54217 chr14 66358496 66359103 + 0 NA TTS (ENSMUSG00000022044.14) protein_coding-TTS (ENSMUSG00000022044.14) 14503 ENSMUSG00000022044.14 ENSMUSG00000022044 ENSMUST00000147477 Stmn4 protein_coding Interval_18565 chr10 87812325 87813549 + 0 NA Intergenic Intergenic -46674 ENSMUSG00000020053.18 ENSMUSG00000020053 ENSMUST00000122100 Igf1 protein_coding Interval_71072 chr17 17654541 17655729 + 0 NA exon (ENSMUSG00000116892.1, exon 2 of 2) processed_pseudogene-exon (ENSMUSG00000116892.1, exon 2 of 2) 3752 ENSMUSG00000116892.1 ENSMUSG00000116892 ENSMUST00000231401 Gm49787 processed_pseudogene Interval_141240 chr6 126328562 126329342 + 0 NA promoter-TSS (ENSMUSG00000107623.1) lincRNA-promoter-TSS (ENSMUSG00000107623.1) -266 ENSMUSG00000107623.1 ENSMUSG00000107623 ENSMUST00000204181 Gm10415 lincRNA Interval_139294 chr6 97997003 97997600 + 0 NA intron (ENSMUSG00000035158.15, intron 4 of 8) protein_coding-intron (ENSMUSG00000035158.15, intron 4 of 8) 5380 ENSMUSG00000035158.15 ENSMUSG00000035158 ENSMUST00000203938 Mitf protein_coding Interval_55553 chr14 91769841 91770045 + 0 NA Intergenic Intergenic 93495 ENSMUSG00000115171.1 ENSMUSG00000115171 ENSMUST00000227750 Gm48943 unprocessed_pseudogene Interval_172205 chrX 9199560 9200919 + 0 NA exon (ENSMUSG00000047344.9, exon 1 of 5) protein_coding-exon (ENSMUSG00000047344.9, exon 1 of 5) 337 ENSMUSG00000047344.9 ENSMUSG00000047344 ENSMUST00000069763 Lancl3 protein_coding Interval_55873 chr14 101709607 101710546 + 0 NA Intergenic Intergenic -1358 ENSMUSG00000115110.1 ENSMUSG00000115110 ENSMUST00000227901 Gm49269 processed_pseudogene Interval_142193 chr6 138085374 138086185 + 0 NA Intergenic Intergenic -5863 ENSMUSG00000044378.12 ENSMUSG00000044378 ENSMUST00000154461 Slc15a5 protein_coding Interval_155054 chr8 25985944 25986603 + 0 NA exon (ENSMUSG00000037251.5, exon 4 of 5) protein_coding-exon (ENSMUSG00000037251.5, exon 4 of 5) 7860 ENSMUSG00000037251.5 ENSMUSG00000037251 ENSMUST00000061850 Pomk protein_coding Interval_160002 chr8 105676147 105676348 + 0 NA intron (ENSMUSG00000005698.15, intron 1 of 2) protein_coding-intron (ENSMUSG00000005698.15, intron 9 of 11) 236 ENSMUSG00000005698.15 ENSMUSG00000005698 ENSMUST00000156436 Ctcf protein_coding Interval_41088 chr12 111100048 111100586 + 0 NA intron (ENSMUSG00000037896.17, intron 6 of 11) protein_coding-intron (ENSMUSG00000037896.17, intron 6 of 11) 9117 ENSMUSG00000113200.1 ENSMUSG00000113200 ENSMUST00000221105 Gm48632 TEC Interval_65167 chr16 20312245 20312798 + 0 NA intron (ENSMUSG00000022818.13, intron 6 of 8) protein_coding-intron (ENSMUSG00000022818.13, intron 5 of 7) 4229 ENSMUSG00000022818.13 ENSMUSG00000022818 ENSMUST00000182669 Cyp2ab1 protein_coding Interval_129538 chr5 120777253 120777444 + 0 NA promoter-TSS (ENSMUSG00000107179.1) antisense-promoter-TSS (ENSMUSG00000107179.1) -448 ENSMUSG00000107179.1 ENSMUSG00000107179 ENSMUST00000201006 Gm43069 antisense Interval_45928 chr13 59363594 59363850 + 0 NA Intergenic Intergenic -33479 ENSMUSG00000114240.1 ENSMUSG00000114240 ENSMUST00000224237 Gm47360 lincRNA Interval_163400 chr9 21261811 21262511 + 0 NA Intergenic Intergenic -5917 ENSMUSG00000002820.6 ENSMUSG00000002820 ENSMUST00000217591 Atg4d protein_coding Interval_106232 chr3 94811793 94812257 + 0 NA Intergenic Intergenic -20952 ENSMUSG00000084058.1 ENSMUSG00000084058 ENSMUST00000121556 Gm15263 processed_pseudogene Interval_150357 chr7 109879165 109879533 + 0 NA Intergenic Intergenic 18207 ENSMUSG00000035901.14 ENSMUSG00000035901 ENSMUST00000151923 Dennd5a protein_coding Interval_111697 chr4 26213638 26214758 + 0 NA Intergenic Intergenic 132693 ENSMUSG00000040520.7 ENSMUSG00000040520 ENSMUST00000153813 Manea protein_coding Interval_160710 chr8 111745696 111746306 + 0 NA Intergenic Intergenic -13865 ENSMUSG00000031955.10 ENSMUSG00000031955 ENSMUST00000212147 Bcar1 protein_coding Interval_65398 chr16 22127321 22128796 + 0 NA intron (ENSMUSG00000033581.17, intron 1 of 4) protein_coding-intron (ENSMUSG00000033581.17, intron 2 of 15) -6822 ENSMUSG00000033581.17 ENSMUSG00000033581 ENSMUST00000127696 Igf2bp2 protein_coding Interval_140839 chr6 122258299 122259538 + 0 NA Intergenic Intergenic 23964 ENSMUSG00000030114.8 ENSMUSG00000030114 ENSMUST00000032207 Klrg1 protein_coding Interval_73244 chr17 35739403 35740150 + 0 NA promoter-TSS (ENSMUSG00000092219.1) lincRNA-promoter-TSS (ENSMUSG00000092219.1) 30 ENSMUSG00000092219.1 ENSMUSG00000092219 ENSMUST00000173840 Gm20443 lincRNA Interval_165473 chr9 48521262 48521783 + 0 NA Intergenic Intergenic -14462 ENSMUSG00000080401.1 ENSMUSG00000080401 ENSMUST00000116751 Gm23653 miRNA Interval_51484 chr14 28188665 28189731 + 0 NA intron (ENSMUSG00000040640.11, intron 13 of 15) protein_coding-intron (ENSMUSG00000040640.11, intron 13 of 15) -226799 ENSMUSG00000114503.1 ENSMUSG00000114503 ENSMUST00000225453 Gm20242 TEC Interval_42394 chr13 12630042 12630314 + 0 NA intron (ENSMUSG00000097715.2, intron 2 of 3) transcribed_unprocessed_pseudogene-intron (ENSMUSG00000097715.2, intron 2 of 4) -10329 ENSMUSG00000097715.2 ENSMUSG00000097715 ENSMUST00000222447 Gpr137b-ps transcribed_unprocessed_pseudogene Interval_11472 chr1 182074109 182074455 + 0 NA Intergenic Intergenic 2879 ENSMUSG00000103379.1 ENSMUSG00000103379 ENSMUST00000193768 Gm37177 processed_pseudogene Interval_43192 chr13 24987348 24988671 + 0 NA exon (ENSMUSG00000021339.4, exon 11 of 11) protein_coding-exon (ENSMUSG00000021339.4, exon 11 of 11) 6790 ENSMUSG00000021339.4 ENSMUSG00000021339 ENSMUST00000224894 Mrs2 protein_coding Interval_22914 chr11 17337796 17337986 + 0 NA Intergenic Intergenic -39472 ENSMUSG00000082797.3 ENSMUSG00000082797 ENSMUST00000117065 Gm12015 processed_pseudogene Interval_23965 chr11 28956686 28957941 + 0 NA exon (ENSMUSG00000081695.1, exon 1 of 1) processed_pseudogene-exon (ENSMUSG00000081695.1, exon 1 of 1) 589 ENSMUSG00000081695.1 ENSMUSG00000081695 ENSMUST00000121462 Rpsa-ps5 processed_pseudogene Interval_123486 chr5 32853491 32854746 + 0 NA exon (ENSMUSG00000054280.14, exon 1 of 11) protein_coding-exon (ENSMUSG00000054280.14, exon 1 of 11) 15989 ENSMUSG00000106654.1 ENSMUSG00000106654 ENSMUST00000199229 Gm2623 processed_pseudogene Interval_84814 chr19 17011411 17011817 + 0 NA intron (ENSMUSG00000039126.10, intron 4 of 6) protein_coding-intron (ENSMUSG00000039126.10, intron 4 of 19) 45573 ENSMUSG00000098298.1 ENSMUSG00000098298 ENSMUST00000184854 Gm27970 misc_RNA Interval_44564 chr13 46096170 46097444 + 0 NA Intergenic Intergenic 36210 ENSMUSG00000113860.1 ENSMUSG00000113860 ENSMUST00000222657 Gm45949 lincRNA Interval_16299 chr10 62055356 62055842 + 0 NA Intergenic Intergenic -15524 ENSMUSG00000046687.6 ENSMUSG00000046687 ENSMUST00000053865 Gm5424 processed_pseudogene Interval_141783 chr6 134450715 134451975 + 0 NA intron (ENSMUSG00000030201.15, intron 10 of 10) protein_coding-intron (ENSMUSG00000030201.15, intron 22 of 22) 16416 ENSMUSG00000030201.15 ENSMUSG00000030201 ENSMUST00000203235 Lrp6 protein_coding Interval_21329 chr10 128014933 128015809 + 0 NA intron (ENSMUSG00000025395.14, intron 1 of 12) protein_coding-intron (ENSMUSG00000025395.14, intron 1 of 12) 203 ENSMUSG00000025395.14 ENSMUSG00000025395 ENSMUST00000138330 Prim1 protein_coding Interval_109038 chr3 135347784 135348897 + 0 NA promoter-TSS (ENSMUSG00000050150.16) protein_coding-promoter-TSS (ENSMUSG00000050150.16) 10 ENSMUSG00000050150.16 ENSMUSG00000050150 ENSMUST00000159276 Slc9b1 protein_coding Interval_21499 chr10 128939228 128939423 + 0 NA exon (ENSMUSG00000025348.9, exon 3 of 25) protein_coding-exon (ENSMUSG00000025348.9, exon 3 of 25) -5580 ENSMUSG00000088768.1 ENSMUSG00000088768 ENSMUST00000158143 Gm25494 snRNA Interval_119492 chr4 137909636 137911223 + 0 NA intron (ENSMUSG00000057530.14, intron 2 of 19) protein_coding-intron (ENSMUSG00000057530.14, intron 2 of 19) -3042 ENSMUSG00000057530.14 ENSMUSG00000057530 ENSMUST00000129607 Ece1 protein_coding Interval_136867 chr6 61952536 61953931 + 0 NA intron (ENSMUSG00000039578.17, intron 9 of 10) protein_coding-intron (ENSMUSG00000039578.17, intron 8 of 9) -3456 ENSMUSG00000039578.17 ENSMUSG00000039578 ENSMUST00000232648 Ccser1 protein_coding Interval_114128 chr4 63861023 63861418 + 0 NA exon (ENSMUSG00000028362.2, exon 1 of 4) protein_coding-exon (ENSMUSG00000028362.2, exon 1 of 4) 127 ENSMUSG00000028362.2 ENSMUSG00000028362 ENSMUST00000030047 Tnfsf8 protein_coding Interval_143744 chr7 16021895 16022823 + 0 NA intron (ENSMUSG00000070808.4, intron 1 of 14) protein_coding-intron (ENSMUSG00000070808.4, intron 1 of 14) 25562 ENSMUSG00000070808.4 ENSMUSG00000070808 ENSMUST00000209251 Bicra protein_coding Interval_81865 chr18 65504448 65505428 + 0 NA Intergenic Intergenic 3532 ENSMUSG00000118389.1 ENSMUSG00000118389 ENSMUST00000237946 Gm50246 processed_pseudogene Interval_124766 chr5 53728984 53729216 + 0 NA Intergenic Intergenic -21540 ENSMUSG00000029193.7 ENSMUSG00000029193 ENSMUST00000202946 Cckar protein_coding Interval_80086 chr18 37437108 37438009 + 0 NA promoter-TSS (ENSMUSG00000103985.1) antisense-promoter-TSS (ENSMUSG00000103985.1) -11 ENSMUSG00000103985.1 ENSMUSG00000103985 ENSMUST00000193015 Gm37446 antisense Interval_133563 chr6 6856286 6856508 + 0 NA promoter-TSS (ENSMUSG00000107967.1) TEC-promoter-TSS (ENSMUSG00000107967.1) -146 ENSMUSG00000107967.1 ENSMUSG00000107967 ENSMUST00000204703 Gm44094 TEC Interval_153884 chr8 10663823 10666402 + 0 NA Intergenic Intergenic 11801 ENSMUSG00000109258.1 ENSMUSG00000109258 ENSMUST00000208649 5330413D20Rik lincRNA Interval_93254 chr2 71499413 71499862 + 0 NA intron (ENSMUSG00000041921.16, intron 1 of 8) protein_coding-intron (ENSMUSG00000041921.16, intron 1 of 9) 4366 ENSMUSG00000088066.1 ENSMUSG00000088066 ENSMUST00000157441 Gm23253 snRNA Interval_22624 chr11 12366300 12367079 + 0 NA intron (ENSMUSG00000020173.17, intron 5 of 14) protein_coding-intron (ENSMUSG00000020173.17, intron 5 of 14) 44414 ENSMUSG00000086584.8 ENSMUSG00000086584 ENSMUST00000174550 Gm12002 antisense Interval_116456 chr4 112825448 112825698 + 0 NA intron (ENSMUSG00000087194.9, intron 43 of 47) protein_coding-intron (ENSMUSG00000087194.9, intron 44 of 48) -50746 ENSMUSG00000048766.6 ENSMUSG00000048766 ENSMUST00000137128 Skint10 protein_coding Interval_126699 chr5 92117759 92118496 + 0 NA TTS (ENSMUSG00000088949.1) rRNA-TTS (ENSMUSG00000088949.1) 156 ENSMUSG00000088949.1 ENSMUSG00000088949 ENSMUST00000158324 Gm24931 rRNA Interval_100477 chr2 169311114 169312258 + 0 NA Intergenic Intergenic 76695 ENSMUSG00000085369.1 ENSMUSG00000085369 ENSMUST00000152494 9430093N23Rik lincRNA Interval_62097 chr15 86585222 86586091 + 0 NA Intergenic Intergenic -110558 ENSMUSG00000115918.1 ENSMUSG00000115918 ENSMUST00000229685 A930001M01Rik antisense Interval_140343 chr6 116755858 116756937 + 0 NA Intergenic Intergenic 9255 ENSMUSG00000088374.1 ENSMUSG00000088374 ENSMUST00000157749 Gm22882 snoRNA Interval_106726 chr3 100131718 100133557 + 0 NA intron (ENSMUSG00000027867.10, intron 48 of 48) protein_coding-intron (ENSMUSG00000027867.10, intron 48 of 48) -25742 ENSMUSG00000085244.8 ENSMUSG00000085244 ENSMUST00000137776 Spag17os antisense Interval_58595 chr15 36460304 36460828 + 0 NA Intergenic Intergenic -23875 ENSMUSG00000115395.1 ENSMUSG00000115395 ENSMUST00000227487 Gm49224 lincRNA Interval_117173 chr4 120230044 120230655 + 0 NA Intergenic Intergenic 57000 ENSMUSG00000052135.8 ENSMUSG00000052135 ENSMUST00000102656 Foxo6 protein_coding Interval_171055 chr9 114021036 114021226 + 0 NA intron (ENSMUSG00000032507.15, intron 1 of 3) protein_coding-intron (ENSMUSG00000032507.15, intron 1 of 14) 5595 ENSMUSG00000032507.15 ENSMUSG00000032507 ENSMUST00000141832 Fbxl2 protein_coding Interval_966 chr1 13525157 13526006 + 0 NA Intergenic Intergenic 64294 ENSMUSG00000025935.10 ENSMUSG00000025935 ENSMUST00000188377 Tram1 protein_coding Interval_116122 chr4 107959820 107960338 + 0 NA intron (ENSMUSG00000086713.1, intron 2 of 2) lincRNA-intron (ENSMUSG00000086713.1, intron 2 of 2) 6147 ENSMUSG00000086713.1 ENSMUSG00000086713 ENSMUST00000145831 4930407G08Rik lincRNA Interval_139669 chr6 106547659 106547861 + 0 NA intron (ENSMUSG00000064293.14, intron 3 of 15) protein_coding-intron (ENSMUSG00000064293.14, intron 10 of 15) -107743 ENSMUSG00000064293.14 ENSMUSG00000064293 ENSMUST00000142626 Cntn4 protein_coding Interval_169330 chr9 96469358 96470791 + 0 NA TTS (ENSMUSG00000051234.6) protein_coding-TTS (ENSMUSG00000051234.6) 8514 ENSMUSG00000051234.6 ENSMUSG00000051234 ENSMUST00000128955 Rnf7 protein_coding Interval_9175 chr1 154728864 154730038 + 0 NA intron (ENSMUSG00000004110.17, intron 1 of 3) protein_coding-intron (ENSMUSG00000004110.17, intron 1 of 3) 87490 ENSMUSG00000004110.17 ENSMUSG00000004110 ENSMUST00000186256 Cacna1e protein_coding Interval_103335 chr3 39219772 39220966 + 0 NA Intergenic Intergenic -2523 ENSMUSG00000107333.1 ENSMUSG00000107333 ENSMUST00000202346 Gm43008 processed_pseudogene Interval_1337 chr1 20775819 20776295 + 0 NA Intergenic Intergenic 3497 ENSMUSG00000041872.9 ENSMUSG00000041872 ENSMUST00000190692 Il17f protein_coding Interval_73802 chr17 43832408 43833448 + 0 NA intron (ENSMUSG00000039601.16, intron 1 of 4) protein_coding-intron (ENSMUSG00000039601.16, intron 1 of 4) 128913 ENSMUSG00000088576.1 ENSMUSG00000088576 ENSMUST00000157951 Gm24532 misc_RNA Interval_98307 chr2 150915820 150916028 + 0 NA intron (ENSMUSG00000027454.10, intron 2 of 4) protein_coding-intron (ENSMUSG00000027454.10, intron 2 of 6) 10524 ENSMUSG00000027454.10 ENSMUSG00000027454 ENSMUST00000123217 Gins1 protein_coding Interval_173136 chrX 73307210 73308181 + 0 NA Intergenic Intergenic -5508 ENSMUSG00000081253.1 ENSMUSG00000081253 ENSMUST00000117684 Gm8501 processed_pseudogene Interval_36438 chr12 44595631 44596096 + 0 NA intron (ENSMUSG00000020598.16, intron 29 of 30) protein_coding-intron (ENSMUSG00000020598.16, intron 30 of 30) 26799 ENSMUSG00000112823.1 ENSMUSG00000112823 ENSMUST00000217983 Gm6125 processed_pseudogene Interval_162853 chr9 10430886 10431116 + 0 NA intron (ENSMUSG00000039488.15, intron 2 of 20) protein_coding-intron (ENSMUSG00000039488.15, intron 2 of 24) -11911 ENSMUSG00000039488.15 ENSMUSG00000039488 ENSMUST00000160358 Cntn5 protein_coding Interval_20503 chr10 118009300 118009788 + 0 NA Intergenic Intergenic 4606 ENSMUSG00000102896.1 ENSMUSG00000102896 ENSMUST00000193027 Gm37852 TEC Interval_125340 chr5 66304547 66304755 + 0 NA intron (ENSMUSG00000029207.16, intron 12 of 12) protein_coding-intron (ENSMUSG00000029207.16, intron 17 of 17) 18366 ENSMUSG00000106818.1 ENSMUSG00000106818 ENSMUST00000202694 Gm43790 TEC Interval_166809 chr9 62880874 62883205 + 0 NA TTS (ENSMUSG00000032405.10) protein_coding-TTS (ENSMUSG00000032405.10) -14039 ENSMUSG00000074250.11 ENSMUSG00000074250 ENSMUST00000139570 Gm10653 transcribed_processed_pseudogene Interval_170928 chr9 112367800 112368127 + 0 NA Intergenic Intergenic 93667 ENSMUSG00000110876.1 ENSMUSG00000110876 ENSMUST00000216779 4933411E02Rik lincRNA Interval_149950 chr7 103403797 103404024 + 0 NA Intergenic Intergenic -11162 ENSMUSG00000058976.4 ENSMUSG00000058976 ENSMUST00000079348 Usp17lc protein_coding Interval_116286 chr4 109301876 109302711 + 0 NA intron (ENSMUSG00000028552.13, intron 2 of 5) protein_coding-intron (ENSMUSG00000028552.13, intron 2 of 24) 57711 ENSMUSG00000028558.14 ENSMUSG00000028558 ENSMUST00000141555 Calr4 protein_coding Interval_101204 chr2 179469945 179470170 + 0 NA intron (ENSMUSG00000000305.12, intron 2 of 2) protein_coding-intron (ENSMUSG00000000305.12, intron 2 of 15) 55121 ENSMUSG00000039138.1 ENSMUSG00000039138 ENSMUST00000041998 4930591A17Rik lincRNA Interval_43339 chr13 29370826 29371366 + 0 NA intron (ENSMUSG00000006191.17, intron 13 of 16) protein_coding-intron (ENSMUSG00000006191.17, intron 13 of 15) -134476 ENSMUSG00000086423.1 ENSMUSG00000086423 ENSMUST00000137593 Gm11364 sense_intronic Interval_57966 chr15 25773340 25774321 + 0 NA promoter-TSS (ENSMUSG00000022272.17) protein_coding-promoter-TSS (ENSMUSG00000022272.17) 5274 ENSMUSG00000022272.17 ENSMUSG00000022272 ENSMUST00000145587 Myo10 protein_coding Interval_91767 chr2 49385447 49386036 + 0 NA Intergenic Intergenic 12774 ENSMUSG00000077769.1 ENSMUSG00000077769 ENSMUST00000104581 Gm25215 snoRNA Interval_70590 chr17 12164946 12165869 + 0 NA intron (ENSMUSG00000023827.8, intron 1 of 6) protein_coding-intron (ENSMUSG00000023827.8, intron 2 of 8) -24514 ENSMUSG00000063911.4 ENSMUSG00000063911 ENSMUST00000074412 Tdgf1-ps2 processed_pseudogene Interval_160729 chr8 111865381 111866021 + 0 NA exon (ENSMUSG00000031953.2, exon 3 of 3) protein_coding-exon (ENSMUSG00000031953.2, exon 3 of 3) 11049 ENSMUSG00000031953.2 ENSMUSG00000031953 ENSMUST00000034431 Tmem170 protein_coding Interval_65994 chr16 30775102 30776179 + 0 NA Intergenic Intergenic 17615 ENSMUSG00000116570.1 ENSMUSG00000116570 ENSMUST00000231445 Gm49754 lincRNA Interval_152823 chr7 138390947 138391268 + 0 NA intron (ENSMUSG00000091002.2, intron 3 of 6) protein_coding-intron (ENSMUSG00000091002.2, intron 3 of 11) 6623 ENSMUSG00000091002.2 ENSMUSG00000091002 ENSMUST00000162222 Tcerg1l protein_coding Interval_132279 chr5 143897820 143898363 + 0 NA promoter-TSS (ENSMUSG00000029607.14) protein_coding-promoter-TSS (ENSMUSG00000029607.14) -406 ENSMUSG00000029607.14 ENSMUSG00000029607 ENSMUST00000110718 Ankrd61 protein_coding Interval_36682 chr12 51990413 51990634 + 0 NA intron (ENSMUSG00000020956.14, intron 3 of 3) protein_coding-intron (ENSMUSG00000020956.14, intron 3 of 3) -4513 ENSMUSG00000112064.1 ENSMUSG00000112064 ENSMUST00000218223 Gm47399 processed_pseudogene Interval_144584 chr7 26476795 26477030 + 0 NA TTS (ENSMUSG00000040601.13) protein_coding-TTS (ENSMUSG00000040601.13) 41266 ENSMUSG00000040601.13 ENSMUSG00000040601 ENSMUST00000146907 Nlrp4a protein_coding Interval_30045 chr11 88863673 88865222 + 0 NA promoter-TSS (ENSMUSG00000018428.15) protein_coding-promoter-TSS (ENSMUSG00000018428.15) 12843 ENSMUSG00000092399.1 ENSMUSG00000092399 ENSMUST00000173677 4930556N13Rik antisense Interval_20368 chr10 117147929 117148899 + 0 NA promoter-TSS (ENSMUSG00000020170.4) protein_coding-promoter-TSS (ENSMUSG00000020170.4) 81 ENSMUSG00000020170.4 ENSMUSG00000020170 ENSMUST00000219104 Frs2 protein_coding Interval_143364 chr7 6145762 6146526 + 0 NA intron (ENSMUSG00000046792.8, intron 1 of 1) protein_coding-intron (ENSMUSG00000046792.8, intron 1 of 2) -3299 ENSMUSG00000046792.8 ENSMUSG00000046792 ENSMUST00000208746 Zfp787 protein_coding Interval_39522 chr12 89261950 89262305 + 0 NA TTS (ENSMUSG00000066392.12) protein_coding-TTS (ENSMUSG00000066392.12) -6766 ENSMUSG00000103136.1 ENSMUSG00000103136 ENSMUST00000194420 Gm37980 TEC Interval_146404 chr7 45714554 45715533 + 0 NA promoter-TSS (ENSMUSG00000059070.16) protein_coding-promoter-TSS (ENSMUSG00000059070.16) -1600 ENSMUSG00000057342.15 ENSMUSG00000057342 ENSMUST00000211340 Sphk2 protein_coding Interval_97463 chr2 136826367 136826581 + 0 NA Intergenic Intergenic 59205 ENSMUSG00000116563.1 ENSMUSG00000116563 ENSMUST00000231720 AL731706.2 protein_coding Interval_7981 chr1 135030033 135030556 + 0 NA intron (ENSMUSG00000042793.13, intron 4 of 17) protein_coding-intron (ENSMUSG00000042793.13, intron 4 of 17) -8203 ENSMUSG00000042793.13 ENSMUSG00000042793 ENSMUST00000139369 Lgr6 protein_coding Interval_6472 chr1 110968867 110970117 + 0 NA intron (ENSMUSG00000047216.8, intron 1 of 2) protein_coding-intron (ENSMUSG00000047216.8, intron 1 of 11) -2055 ENSMUSG00000102160.1 ENSMUSG00000102160 ENSMUST00000192257 Gm36944 TEC Interval_41831 chr13 3086600 3086929 + 0 NA intron (ENSMUSG00000091834.2, intron 1 of 3) transcribed_unprocessed_pseudogene-intron (ENSMUSG00000091834.2, intron 1 of 3) 4576 ENSMUSG00000091834.2 ENSMUSG00000091834 ENSMUST00000169144 Gm17177 transcribed_unprocessed_pseudogene Interval_104009 chr3 57204226 57204548 + 0 NA Intergenic Intergenic -44865 ENSMUSG00000106286.1 ENSMUSG00000106286 ENSMUST00000200484 Gm43424 processed_pseudogene Interval_118841 chr4 133991842 133992835 + 0 NA intron (ENSMUSG00000012117.13, intron 3 of 6) protein_coding-intron (ENSMUSG00000012117.13, intron 5 of 8) 4586 ENSMUSG00000012117.13 ENSMUSG00000012117 ENSMUST00000150729 Dhdds protein_coding Interval_137576 chr6 73485185 73486169 + 0 NA Intergenic Intergenic -14656 ENSMUSG00000107408.1 ENSMUSG00000107408 ENSMUST00000204961 1700065L07Rik lincRNA Interval_2371 chr1 38655053 38655640 + 0 NA intron (ENSMUSG00000037138.18, intron 1 of 22) protein_coding-intron (ENSMUSG00000037138.18, intron 1 of 7) -28145 ENSMUSG00000037138.18 ENSMUSG00000037138 ENSMUST00000134963 Aff3 protein_coding Interval_67076 chr16 42641413 42643412 + 0 NA Intergenic Intergenic -21514 ENSMUSG00000116679.1 ENSMUSG00000116679 ENSMUST00000232064 Gm49739 processed_pseudogene Interval_59955 chr15 62203993 62204524 + 0 NA intron (ENSMUSG00000097039.8, intron 1 of 3) lincRNA-intron (ENSMUSG00000097039.8, intron 5 of 8) 15074 ENSMUSG00000101167.1 ENSMUSG00000101167 ENSMUST00000151919 Macroh2a3 processed_pseudogene Interval_59457 chr15 53283964 53284360 + 0 NA intron (ENSMUSG00000061731.9, intron 1 of 10) protein_coding-intron (ENSMUSG00000061731.9, intron 1 of 10) -99757 ENSMUSG00000087805.2 ENSMUSG00000087805 ENSMUST00000157180 Gm27926 snRNA Interval_97910 chr2 145610586 145611336 + 0 NA intron (ENSMUSG00000063873.10, intron 12 of 16) protein_coding-intron (ENSMUSG00000063873.10, intron 11 of 15) -55979 ENSMUSG00000074753.5 ENSMUSG00000074753 ENSMUST00000136794 Gm14092 antisense Interval_86871 chr19 44510515 44512184 + 0 NA exon (ENSMUSG00000036961.5, exon 5 of 6) protein_coding-exon (ENSMUSG00000036961.5, exon 5 of 6) 1028 ENSMUSG00000036961.5 ENSMUSG00000036961 ENSMUST00000237970 Wnt8b protein_coding Interval_25748 chr11 51410840 51411339 + 0 NA intron (ENSMUSG00000063564.13, intron 2 of 28) protein_coding-intron (ENSMUSG00000063564.13, intron 2 of 28) 140654 ENSMUSG00000093734.1 ENSMUSG00000093734 ENSMUST00000177296 Gm25082 misc_RNA Interval_53366 chr14 56696852 56698208 + 0 NA TTS (ENSMUSG00000079184.10) protein_coding-TTS (ENSMUSG00000079184.10) 1831 ENSMUSG00000097743.1 ENSMUSG00000097743 ENSMUST00000180682 Gm16973 lincRNA Interval_162183 chr8 125758972 125759434 + 0 NA exon (ENSMUSG00000060212.13, exon 32 of 34) protein_coding-exon (ENSMUSG00000060212.13, exon 32 of 34) 23368 ENSMUSG00000031851.14 ENSMUSG00000031851 ENSMUST00000152189 Ntpcr protein_coding Interval_105790 chr3 89348911 89350564 + 0 NA promoter-TSS (ENSMUSG00000028041.17) protein_coding-promoter-TSS (ENSMUSG00000028041.17) 245 ENSMUSG00000028041.17 ENSMUSG00000028041 ENSMUST00000134590 Adam15 protein_coding Interval_6693 chr1 118825131 118826136 + 0 NA Intergenic Intergenic 15497 ENSMUSG00000100040.1 ENSMUSG00000100040 ENSMUST00000190981 Gm28467 processed_pseudogene Interval_1232 chr1 17726865 17727920 + 0 NA promoter-TSS (ENSMUSG00000085125.7) antisense-promoter-TSS (ENSMUSG00000085125.7) -108 ENSMUSG00000085125.7 ENSMUSG00000085125 ENSMUST00000149914 Gm16070 antisense Interval_92110 chr2 53292127 53292737 + 0 NA Intergenic Intergenic -17591 ENSMUSG00000088928.1 ENSMUSG00000088928 ENSMUST00000158303 Gm25898 snRNA Interval_131903 chr5 140704171 140705467 + 0 NA promoter-TSS (ENSMUSG00000000148.17) protein_coding-promoter-TSS (ENSMUSG00000000148.17) -204 ENSMUSG00000000148.17 ENSMUSG00000000148 ENSMUST00000100505 Brat1 protein_coding Interval_63509 chr15 101541003 101543248 + 0 NA intron (ENSMUSG00000049548.9, intron 8 of 8) protein_coding-intron (ENSMUSG00000049548.9, intron 8 of 8) 8542 ENSMUSG00000049548.9 ENSMUSG00000049548 ENSMUST00000023713 Krt82 protein_coding Interval_98469 chr2 152633433 152634845 + 0 NA intron (ENSMUSG00000000359.3, intron 1 of 1) protein_coding-intron (ENSMUSG00000000359.3, intron 4 of 4) 7186 ENSMUSG00000000359.3 ENSMUSG00000000359 ENSMUST00000139370 Rem1 protein_coding Interval_50952 chr14 21051793 21053113 + 0 NA promoter-TSS (ENSMUSG00000021824.13) protein_coding-promoter-TSS (ENSMUSG00000021824.13) -164 ENSMUSG00000039197.10 ENSMUSG00000039197 ENSMUST00000224974 Adk protein_coding Interval_164278 chr9 34971924 34972193 + 0 NA intron (ENSMUSG00000032036.15, intron 4 of 13) protein_coding-intron (ENSMUSG00000032036.15, intron 5 of 16) 12039 ENSMUSG00000089465.1 ENSMUSG00000089465 ENSMUST00000158840 Gm23702 rRNA Interval_111136 chr4 12770236 12771112 + 0 NA Intergenic Intergenic -42032 ENSMUSG00000065823.1 ENSMUSG00000065823 ENSMUST00000083889 n-R5s182 rRNA Interval_109316 chr3 138865484 138866358 + 0 NA intron (ENSMUSG00000028152.10, intron 1 of 7) protein_coding-intron (ENSMUSG00000028152.10, intron 1 of 7) -36759 ENSMUSG00000086123.3 ENSMUSG00000086123 ENSMUST00000153140 Gm16060 processed_pseudogene Interval_113205 chr4 49843782 49846061 + 0 NA exon (ENSMUSG00000039579.15, exon 1 of 9) protein_coding-exon (ENSMUSG00000039579.15, exon 1 of 9) -97675 ENSMUSG00000083153.1 ENSMUSG00000083153 ENSMUST00000120659 Gm12459 processed_pseudogene Interval_43661 chr13 34683677 34684537 + 0 NA Intergenic Intergenic -3186 ENSMUSG00000113044.1 ENSMUSG00000113044 ENSMUST00000221868 Gm47149 processed_pseudogene Interval_97881 chr2 144724529 144725108 + 0 NA intron (ENSMUSG00000027430.12, intron 2 of 2) protein_coding-intron (ENSMUSG00000027430.12, intron 4 of 5) -31511 ENSMUSG00000084306.1 ENSMUSG00000084306 ENSMUST00000117385 Gm11743 processed_pseudogene Interval_90367 chr2 30023810 30024110 + 0 NA intron (ENSMUSG00000057738.14, intron 1 of 1) protein_coding-intron (ENSMUSG00000057738.14, intron 43 of 54) 24901 ENSMUSG00000039715.8 ENSMUSG00000039715 ENSMUST00000146275 Wdr34 protein_coding Interval_156806 chr8 60631534 60633495 + 0 NA promoter-TSS (ENSMUSG00000031647.10) protein_coding-promoter-TSS (ENSMUSG00000031647.10) 217 ENSMUSG00000109930.1 ENSMUSG00000109930 ENSMUST00000210674 Gm34730 bidirectional_promoter_lncRNA Interval_32374 chr11 107209746 107210860 + 0 NA exon (ENSMUSG00000040430.18, exon 8 of 8) protein_coding-exon (ENSMUSG00000040430.18, exon 8 of 8) 19209 ENSMUSG00000081360.1 ENSMUSG00000081360 ENSMUST00000119942 Gm11718 processed_pseudogene Interval_47404 chr13 83572579 83574084 + 0 NA promoter-TSS (ENSMUSG00000005583.16) protein_coding-promoter-TSS (ENSMUSG00000005583.16) 49040 ENSMUSG00000005583.16 ENSMUSG00000005583 ENSMUST00000197145 Mef2c protein_coding Interval_91817 chr2 49840516 49841138 + 0 NA intron (ENSMUSG00000026765.12, intron 1 of 5) protein_coding-intron (ENSMUSG00000026765.12, intron 1 of 9) -27879 ENSMUSG00000085357.1 ENSMUSG00000085357 ENSMUST00000125095 Gm13480 lincRNA Interval_105179 chr3 83273704 83274219 + 0 NA intron (ENSMUSG00000102692.1, intron 6 of 19) protein_coding-intron (ENSMUSG00000102692.1, intron 6 of 19) -129441 ENSMUSG00000103459.1 ENSMUSG00000103459 ENSMUST00000193692 Gm38096 lincRNA Interval_26100 chr11 54189087 54189363 + 0 NA intron (ENSMUSG00000086209.1, intron 2 of 2) lincRNA-intron (ENSMUSG00000086209.1, intron 2 of 2) -10208 ENSMUSG00000060068.7 ENSMUSG00000060068 ENSMUST00000121368 Gm12222 processed_pseudogene Interval_149186 chr7 96117127 96117432 + 0 NA Intergenic Intergenic 86257 ENSMUSG00000108528.1 ENSMUSG00000108528 ENSMUST00000205708 Gm8319 processed_pseudogene Interval_60205 chr15 68003295 68003495 + 0 NA Intergenic Intergenic -60591 ENSMUSG00000116519.1 ENSMUSG00000116519 ENSMUST00000230045 Gm49409 processed_pseudogene Interval_116496 chr4 114688474 114689574 + 0 NA Intergenic Intergenic 8220 ENSMUSG00000085870.1 ENSMUSG00000085870 ENSMUST00000146346 Gm12829 lincRNA Interval_89622 chr2 23469552 23469886 + 0 NA Intergenic Intergenic -23212 ENSMUSG00000102704.1 ENSMUSG00000102704 ENSMUST00000192063 Gm38309 TEC Interval_151727 chr7 126279847 126280960 + 0 NA intron (ENSMUSG00000042978.11, intron 1 of 1) protein_coding-intron (ENSMUSG00000042978.11, intron 1 of 3) 19513 ENSMUSG00000066180.5 ENSMUSG00000066180 ENSMUST00000084598 Gm10155 processed_pseudogene Interval_25160 chr11 44631942 44632227 + 0 NA intron (ENSMUSG00000057098.14, intron 4 of 5) protein_coding-intron (ENSMUSG00000057098.14, intron 4 of 15) 13968 ENSMUSG00000057098.14 ENSMUSG00000057098 ENSMUST00000140822 Ebf1 protein_coding Interval_123715 chr5 34752504 34753102 + 0 NA intron (ENSMUSG00000052783.16, intron 5 of 5) protein_coding-intron (ENSMUSG00000052783.16, intron 15 of 15) -19831 ENSMUSG00000080556.1 ENSMUSG00000080556 ENSMUST00000116906 Mir467g miRNA Interval_164403 chr9 36776720 36776948 + 0 NA intron (ENSMUSG00000096993.3, intron 2 of 3) antisense-intron (ENSMUSG00000096993.3, intron 2 of 3) 8947 ENSMUSG00000096993.3 ENSMUSG00000096993 ENSMUST00000180474 Gm26787 antisense Interval_36180 chr12 38047410 38048036 + 0 NA intron (ENSMUSG00000113608.1, intron 1 of 1) protein_coding-intron (ENSMUSG00000036095.11, intron 2 of 24) 28012 ENSMUSG00000113608.1 ENSMUSG00000113608 ENSMUST00000221127 Gm48715 antisense Interval_165671 chr9 50832457 50833387 + 0 NA intron (ENSMUSG00000032059.13, intron 1 of 1) protein_coding-intron (ENSMUSG00000032059.13, intron 14 of 14) 30853 ENSMUSG00000032059.13 ENSMUSG00000032059 ENSMUST00000162596 Alg9 protein_coding Interval_47121 chr13 75942989 75944474 + 0 NA exon (ENSMUSG00000021589.13, exon 1 of 12) protein_coding-exon (ENSMUSG00000021589.13, exon 1 of 12) -10405 ENSMUSG00000061833.6 ENSMUSG00000061833 ENSMUST00000073790 Gm6311 processed_pseudogene Interval_51967 chr14 34330425 34331648 + 0 NA intron (ENSMUSG00000021794.16, intron 1 of 1) protein_coding-intron (ENSMUSG00000021794.16, intron 5 of 12) -3230 ENSMUSG00000021794.16 ENSMUSG00000021794 ENSMUST00000161593 Glud1 protein_coding Interval_17476 chr10 77130500 77132047 + 0 NA intron (ENSMUSG00000001435.15, intron 2 of 41) protein_coding-intron (ENSMUSG00000001435.15, intron 2 of 41) -5827 ENSMUSG00000112612.1 ENSMUSG00000112612 ENSMUST00000218871 Gm7775 processed_pseudogene Interval_77964 chr18 6192287 6192589 + 0 NA Intergenic Intergenic -21475 ENSMUSG00000091165.1 ENSMUSG00000091165 ENSMUST00000168187 Gm17036 antisense Interval_90715 chr2 32074100 32074797 + 0 NA intron (ENSMUSG00000050592.8, intron 2 of 5) protein_coding-intron (ENSMUSG00000050592.8, intron 1 of 1) -9537 ENSMUSG00000090157.7 ENSMUSG00000090157 ENSMUST00000156387 Gm16534 processed_transcript Interval_4654 chr1 75714562 75715923 + 0 NA Intergenic Intergenic 78852 ENSMUSG00000082012.1 ENSMUSG00000082012 ENSMUST00000121823 Gm5257 processed_pseudogene Interval_105396 chr3 85973764 85974040 + 0 NA intron (ENSMUSG00000028082.14, intron 1 of 20) protein_coding-intron (ENSMUSG00000028082.14, intron 1 of 20) -10992 ENSMUSG00000098444.1 ENSMUSG00000098444 ENSMUST00000185022 Gm27811 snRNA Interval_72448 chr17 29861149 29861590 + 0 NA intron (ENSMUSG00000043557.16, intron 1 of 4) protein_coding-intron (ENSMUSG00000043557.16, intron 1 of 15) -21388 ENSMUSG00000043557.16 ENSMUSG00000043557 ENSMUST00000167102 Mdga1 protein_coding Interval_4789 chr1 78686021 78687125 + 0 NA intron (ENSMUSG00000032883.15, intron 2 of 14) protein_coding-intron (ENSMUSG00000032883.15, intron 3 of 15) -3690 ENSMUSG00000032883.15 ENSMUSG00000032883 ENSMUST00000148608 Acsl3 protein_coding Interval_131097 chr5 135089106 135090570 + 0 NA promoter-TSS (ENSMUSG00000005373.13) protein_coding-promoter-TSS (ENSMUSG00000005373.13) -52 ENSMUSG00000005373.13 ENSMUSG00000005373 ENSMUST00000123370 Mlxipl protein_coding Interval_84030 chr19 6839347 6840987 + 0 NA promoter-TSS (ENSMUSG00000024952.13) protein_coding-promoter-TSS (ENSMUSG00000024952.13) 449 ENSMUSG00000024952.13 ENSMUSG00000024952 ENSMUST00000237303 Rps6ka4 protein_coding Interval_59851 chr15 59787328 59787528 + 0 NA TTS (ENSMUSG00000115426.1) lincRNA-TTS (ENSMUSG00000115426.1) 7531 ENSMUSG00000115426.1 ENSMUSG00000115426 ENSMUST00000228865 Gm19510 lincRNA Interval_85862 chr19 32494479 32495226 + 0 NA intron (ENSMUSG00000024896.9, intron 3 of 4) protein_coding-intron (ENSMUSG00000024896.9, intron 3 of 4) 8929 ENSMUSG00000024896.9 ENSMUSG00000024896 ENSMUST00000236287 Minpp1 protein_coding Interval_140697 chr6 120639317 120640000 + 0 NA Intergenic Intergenic -59482 ENSMUSG00000107580.1 ENSMUSG00000107580 ENSMUST00000204159 Gm44124 TEC Interval_74396 chr17 49904547 49904750 + 0 NA intron (ENSMUSG00000023999.14, intron 22 of 22) protein_coding-intron (ENSMUSG00000023999.14, intron 7 of 7) -8681 ENSMUSG00000090227.1 ENSMUSG00000090227 ENSMUST00000159471 Gm16554 antisense Interval_130096 chr5 124241218 124241771 + 0 NA intron (ENSMUSG00000029406.15, intron 1 of 24) protein_coding-intron (ENSMUSG00000029406.15, intron 1 of 25) 3770 ENSMUSG00000105759.1 ENSMUSG00000105759 ENSMUST00000197756 Gm42425 antisense Interval_131503 chr5 137610246 137611233 + 0 NA promoter-TSS (ENSMUSG00000029718.14) protein_coding-promoter-TSS (ENSMUSG00000029718.14) -265 ENSMUSG00000029718.14 ENSMUSG00000029718 ENSMUST00000137210 Pcolce protein_coding Interval_164252 chr9 34488528 34489643 + 0 NA TTS (ENSMUSG00000032036.15) protein_coding-TTS (ENSMUSG00000032036.15) 290 ENSMUSG00000032036.15 ENSMUSG00000032036 ENSMUST00000188658 Kirrel3 protein_coding Interval_144302 chr7 24384760 24385380 + 0 NA TTS (ENSMUSG00000054342.8) protein_coding-TTS (ENSMUSG00000054342.8) 2016 ENSMUSG00000054342.8 ENSMUSG00000054342 ENSMUST00000206910 Kcnn4 protein_coding Interval_76917 chr17 84977264 84977667 + 0 NA intron (ENSMUSG00000061130.13, intron 2 of 7) protein_coding-intron (ENSMUSG00000061130.13, intron 1 of 5) -16215 ENSMUSG00000061130.13 ENSMUSG00000061130 ENSMUST00000234851 Ppm1b protein_coding Interval_86458 chr19 40697846 40698345 + 0 NA intron (ENSMUSG00000048120.16, intron 1 of 2) protein_coding-intron (ENSMUSG00000048120.16, intron 1 of 9) -50658 ENSMUSG00000108929.2 ENSMUSG00000108929 ENSMUST00000207791 Cc2d2b protein_coding Interval_26716 chr11 59947868 59948693 + 0 NA promoter-TSS (ENSMUSG00000061650.6) protein_coding-promoter-TSS (ENSMUSG00000061650.6) 74 ENSMUSG00000061650.6 ENSMUSG00000061650 ENSMUST00000081980 Med9 protein_coding Interval_48560 chr13 100241632 100242019 + 0 NA intron (ENSMUSG00000071203.6, intron 3 of 13) protein_coding-intron (ENSMUSG00000071203.6, intron 3 of 13) 4498 ENSMUSG00000071203.6 ENSMUSG00000071203 ENSMUST00000049789 Naip5 protein_coding Interval_172324 chrX 13021583 13023598 + 0 NA Intergenic Intergenic -19461 ENSMUSG00000087424.1 ENSMUSG00000087424 ENSMUST00000130099 5730405O15Rik processed_transcript Interval_40158 chr12 102069677 102069964 + 0 NA Intergenic Intergenic -59599 ENSMUSG00000041771.14 ENSMUSG00000041771 ENSMUST00000235018 Slc24a4 protein_coding Interval_3596 chr1 59848008 59848450 + 0 NA intron (ENSMUSG00000067336.6, intron 7 of 12) protein_coding-intron (ENSMUSG00000067336.6, intron 7 of 12) -2436 ENSMUSG00000067336.6 ENSMUSG00000067336 ENSMUST00000186246 Bmpr2 protein_coding Interval_146449 chr7 46002516 46003203 + 0 NA intron (ENSMUSG00000030834.7, intron 13 of 30) protein_coding-intron (ENSMUSG00000030834.7, intron 13 of 30) -1790 ENSMUSG00000030834.7 ENSMUSG00000030834 ENSMUST00000211780 Abcc6 protein_coding Interval_51537 chr14 29967605 29968818 + 0 NA promoter-TSS (ENSMUSG00000042682.9) protein_coding-promoter-TSS (ENSMUSG00000042682.9) -217 ENSMUSG00000042682.9 ENSMUSG00000042682 ENSMUST00000133229 Selenok protein_coding Interval_8942 chr1 152555380 152556808 + 0 NA intron (ENSMUSG00000026482.13, intron 6 of 18) protein_coding-intron (ENSMUSG00000026482.13, intron 5 of 17) -3050 ENSMUSG00000026482.13 ENSMUSG00000026482 ENSMUST00000149536 Rgl1 protein_coding Interval_66356 chr16 33346369 33346616 + 0 NA Intergenic Intergenic 34183 ENSMUSG00000097318.2 ENSMUSG00000097318 ENSMUST00000180923 1700007L15Rik bidirectional_promoter_lncRNA Interval_71752 chr17 25867596 25869232 + 0 NA promoter-TSS (ENSMUSG00000025732.6) protein_coding-promoter-TSS (ENSMUSG00000025732.6) -578 ENSMUSG00000025732.6 ENSMUSG00000025732 ENSMUST00000235578 Mcrip2 protein_coding Interval_164627 chr9 40191545 40193163 + 0 NA promoter-TSS (ENSMUSG00000025602.13) protein_coding-promoter-TSS (ENSMUSG00000025602.13) 25 ENSMUSG00000025602.13 ENSMUSG00000025602 ENSMUST00000168832 Zfp202 protein_coding Interval_160180 chr8 106974498 106975184 + 0 NA intron (ENSMUSG00000041308.6, intron 1 of 6) protein_coding-intron (ENSMUSG00000041308.6, intron 1 of 5) 34770 ENSMUSG00000088969.1 ENSMUSG00000088969 ENSMUST00000158344 Gm22085 snRNA Interval_71601 chr17 24779376 24779731 + 0 NA promoter-TSS (ENSMUSG00000117379.1) lincRNA-promoter-TSS (ENSMUSG00000117379.1) -150 ENSMUSG00000117379.1 ENSMUSG00000117379 ENSMUST00000234130 Gm50022 lincRNA Interval_99853 chr2 165332742 165333021 + 0 NA Intergenic Intergenic -21239 ENSMUSG00000017670.16 ENSMUSG00000017670 ENSMUST00000128690 Elmo2 protein_coding Interval_3098 chr1 53296687 53297588 + 0 NA promoter-TSS (ENSMUSG00000026097.9) protein_coding-promoter-TSS (ENSMUSG00000026097.9) 26 ENSMUSG00000100679.1 ENSMUSG00000100679 ENSMUST00000190734 Gm28778 protein_coding Interval_121528 chr5 3223800 3224550 + 0 NA Intergenic Intergenic 11840 ENSMUSG00000105800.1 ENSMUSG00000105800 ENSMUST00000196472 Gm18985 unprocessed_pseudogene Interval_173622 chrX 101130855 101131440 + 0 NA intron (ENSMUSG00000046032.16, intron 4 of 5) protein_coding-intron (ENSMUSG00000046032.16, intron 4 of 5) 10405 ENSMUSG00000088114.1 ENSMUSG00000088114 ENSMUST00000157489 Gm24061 snoRNA Interval_105260 chr3 84312798 84313464 + 0 NA Intergenic Intergenic -6254 ENSMUSG00000027993.16 ENSMUSG00000027993 ENSMUST00000197845 Trim2 protein_coding Interval_150026 chr7 105141815 105142006 + 0 NA exon (ENSMUSG00000044120.5, exon 4 of 4) protein_coding-exon (ENSMUSG00000044120.5, exon 4 of 4) 3637 ENSMUSG00000109918.1 ENSMUSG00000109918 ENSMUST00000211388 Gm45374 unprocessed_pseudogene Interval_79191 chr18 25548302 25548718 + 0 NA intron (ENSMUSG00000024268.16, intron 2 of 5) protein_coding-intron (ENSMUSG00000024268.16, intron 2 of 12) -47271 ENSMUSG00000024268.16 ENSMUSG00000024268 ENSMUST00000224143 Celf4 protein_coding Interval_41356 chr12 113041385 113041727 + 0 NA intron (ENSMUSG00000021143.10, intron 2 of 5) protein_coding-intron (ENSMUSG00000021143.10, intron 1 of 23) 21882 ENSMUSG00000104729.1 ENSMUSG00000104729 ENSMUST00000197963 Gm44471 miRNA Interval_14289 chr10 30517373 30518916 + 0 NA Intergenic Intergenic -4021 ENSMUSG00000111397.1 ENSMUSG00000111397 ENSMUST00000214959 Gm48232 TEC Interval_114091 chr4 63377361 63378168 + 0 NA exon (ENSMUSG00000039158.11, exon 14 of 22) protein_coding-exon (ENSMUSG00000039158.11, exon 14 of 22) 3439 ENSMUSG00000039158.11 ENSMUSG00000039158 ENSMUST00000140586 Akna protein_coding Interval_50327 chr14 11866647 11866867 + 0 NA promoter-TSS (ENSMUSG00000114431.1) TEC-promoter-TSS (ENSMUSG00000114431.1) -837 ENSMUSG00000114431.1 ENSMUSG00000114431 ENSMUST00000224051 Gm48601 TEC Interval_4683 chr1 76907428 76908309 + 0 NA intron (ENSMUSG00000100534.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000100534.1, intron 1 of 1) 119924 ENSMUSG00000100534.1 ENSMUSG00000100534 ENSMUST00000191156 Gm816 lincRNA Interval_139128 chr6 95669431 95669753 + 0 NA intron (ENSMUSG00000061838.7, intron 1 of 10) protein_coding-intron (ENSMUSG00000061838.7, intron 1 of 10) -12124 ENSMUSG00000061838.7 ENSMUSG00000061838 ENSMUST00000203109 Suclg2 protein_coding Interval_25856 chr11 52186689 52187799 + 0 NA Intergenic Intergenic -1709 ENSMUSG00000083175.1 ENSMUSG00000083175 ENSMUST00000119795 Gm12206 processed_pseudogene Interval_100537 chr2 170009028 170010189 + 0 NA intron (ENSMUSG00000047907.11, intron 1 of 1) protein_coding-intron (ENSMUSG00000047907.11, intron 1 of 1) -46421 ENSMUSG00000103935.1 ENSMUSG00000103935 ENSMUST00000194482 AY702102 TEC Interval_14366 chr10 31592568 31592779 + 0 NA intron (ENSMUSG00000063760.9, intron 1 of 5) protein_coding-intron (ENSMUSG00000063760.9, intron 1 of 5) 16511 ENSMUSG00000063760.9 ENSMUSG00000063760 ENSMUST00000081989 Rnf217 protein_coding Interval_13578 chr10 19904006 19904311 + 0 NA exon (ENSMUSG00000020003.16, exon 1 of 1) protein_coding-exon (ENSMUSG00000020003.16, exon 1 of 1) 3493 ENSMUSG00000020003.16 ENSMUSG00000020003 ENSMUST00000214951 Pex7 protein_coding Interval_70129 chr17 5614819 5615697 + 0 NA intron (ENSMUSG00000034265.8, intron 1 of 8) protein_coding-intron (ENSMUSG00000034265.8, intron 1 of 8) 122701 ENSMUSG00000034265.8 ENSMUSG00000034265 ENSMUST00000089185 Zdhhc14 protein_coding Interval_98436 chr2 152343314 152344602 + 0 NA promoter-TSS (ENSMUSG00000032715.9) protein_coding-promoter-TSS (ENSMUSG00000032715.9) 12 ENSMUSG00000032715.9 ENSMUSG00000032715 ENSMUST00000124995 Trib3 protein_coding Interval_20800 chr10 121043497 121044498 + 0 NA intron (ENSMUSG00000020218.11, intron 2 of 9) protein_coding-intron (ENSMUSG00000020218.11, intron 2 of 9) 9973 ENSMUSG00000020218.11 ENSMUSG00000020218 ENSMUST00000145691 Wif1 protein_coding Interval_116967 chr4 118516764 118518390 + 0 NA Intergenic Intergenic -4441 ENSMUSG00000081233.1 ENSMUSG00000081233 ENSMUST00000117678 Gm12857 processed_pseudogene Interval_3249 chr1 55171827 55172863 + 0 NA intron (ENSMUSG00000025978.14, intron 7 of 7) protein_coding-intron (ENSMUSG00000025978.14, intron 8 of 8) -11292 ENSMUSG00000061863.6 ENSMUSG00000061863 ENSMUST00000161440 Gm6822 processed_pseudogene Interval_155822 chr8 39419533 39419803 + 0 NA Intergenic Intergenic -36242 ENSMUSG00000110118.1 ENSMUSG00000110118 ENSMUST00000210008 Gm5609 processed_pseudogene Interval_146806 chr7 51972427 51973268 + 0 NA intron (ENSMUSG00000030498.15, intron 6 of 6) protein_coding-intron (ENSMUSG00000030498.15, intron 7 of 7) 32851 ENSMUSG00000074093.4 ENSMUSG00000074093 ENSMUST00000207457 Svip protein_coding Interval_47543 chr13 87327807 87328006 + 0 NA Intergenic Intergenic 20180 ENSMUSG00000114750.1 ENSMUSG00000114750 ENSMUST00000225883 Gm18265 processed_pseudogene Interval_57316 chr15 8708203 8708894 + 0 NA TTS (ENSMUSG00000005360.14) protein_coding-TTS (ENSMUSG00000005360.14) 1861 ENSMUSG00000005360.14 ENSMUSG00000005360 ENSMUST00000126747 Slc1a3 protein_coding Interval_88711 chr2 9923262 9923617 + 0 NA intron (ENSMUSG00000025782.12, intron 2 of 4) protein_coding-intron (ENSMUSG00000025782.12, intron 4 of 6) 17261 ENSMUSG00000075534.5 ENSMUSG00000075534 ENSMUST00000149014 Gm13262 antisense Interval_6686 chr1 118748323 118749125 + 0 NA Intergenic Intergenic -61412 ENSMUSG00000100040.1 ENSMUSG00000100040 ENSMUST00000190981 Gm28467 processed_pseudogene Interval_22809 chr11 16105537 16105933 + 0 NA Intergenic Intergenic 67942 ENSMUSG00000104323.1 ENSMUSG00000104323 ENSMUST00000193500 Gm37319 TEC Interval_86352 chr19 38944582 38945007 + 0 NA TTS (ENSMUSG00000025001.11) protein_coding-TTS (ENSMUSG00000025001.11) 13404 ENSMUSG00000025001.11 ENSMUSG00000025001 ENSMUST00000127968 Hells protein_coding Interval_29726 chr11 86424659 86425287 + 0 NA Intergenic Intergenic 12442 ENSMUSG00000064526.1 ENSMUSG00000064526 ENSMUST00000082592 Gm26439 snRNA Interval_32180 chr11 105959510 105959907 + 0 NA Intergenic Intergenic -15279 ENSMUSG00000019590.16 ENSMUSG00000019590 ENSMUST00000150563 Cyb561 protein_coding Interval_41213 chr12 111824890 111825367 + 0 NA TTS (ENSMUSG00000021286.8) protein_coding-TTS (ENSMUSG00000021286.8) 10920 ENSMUSG00000021286.8 ENSMUSG00000021286 ENSMUST00000221313 Zfyve21 protein_coding Interval_21415 chr10 128467252 128467476 + 0 NA intron (ENSMUSG00000025369.15, intron 7 of 7) protein_coding-intron (ENSMUSG00000025369.15, intron 7 of 27) 7708 ENSMUSG00000025369.15 ENSMUSG00000025369 ENSMUST00000217751 Smarcc2 protein_coding Interval_126402 chr5 88044750 88046163 + 0 NA Intergenic Intergenic -17060 ENSMUSG00000105905.1 ENSMUSG00000105905 ENSMUST00000199391 Gm7709 processed_pseudogene Interval_85964 chr19 34246367 34246966 + 0 NA exon (ENSMUSG00000035783.9, exon 5 of 9) protein_coding-exon (ENSMUSG00000035783.9, exon 5 of 9) 7564 ENSMUSG00000035783.9 ENSMUSG00000035783 ENSMUST00000238147 Acta2 protein_coding Interval_82406 chr18 73760078 73760453 + 0 NA Intergenic Intergenic -5786 ENSMUSG00000036941.2 ENSMUSG00000036941 ENSMUST00000041138 Elac1 protein_coding Interval_56037 chr14 105024025 105024278 + 0 NA Intergenic Intergenic -19299 ENSMUSG00000115195.1 ENSMUSG00000115195 ENSMUST00000227910 Gm5671 processed_pseudogene Interval_7521 chr1 131970009 131972912 + 0 NA intron (ENSMUSG00000026435.15, intron 1 of 4) protein_coding-intron (ENSMUSG00000026435.15, intron 1 of 4) -5259 ENSMUSG00000026435.15 ENSMUSG00000026435 ENSMUST00000185387 Slc45a3 protein_coding Interval_168240 chr9 78131161 78131390 + 0 NA intron (ENSMUSG00000009828.15, intron 1 of 1) protein_coding-intron (ENSMUSG00000009828.15, intron 1 of 13) 18432 ENSMUSG00000009828.15 ENSMUSG00000009828 ENSMUST00000142402 Cilk1 protein_coding Interval_87397 chr19 48649862 48650701 + 0 NA intron (ENSMUSG00000063434.6, intron 6 of 6) protein_coding-intron (ENSMUSG00000063434.6, intron 6 of 26) -160855 ENSMUSG00000117930.1 ENSMUSG00000117930 ENSMUST00000236384 Gm50436 TEC Interval_87864 chr19 56665726 56666748 + 0 NA Intergenic Intergenic -1626 ENSMUSG00000117890.1 ENSMUSG00000117890 ENSMUST00000237615 Gm32441 lincRNA Interval_47713 chr13 91640627 91641004 + 0 NA intron (ENSMUSG00000003992.15, intron 4 of 6) protein_coding-intron (ENSMUSG00000003992.15, intron 4 of 16) -82441 ENSMUSG00000077278.1 ENSMUSG00000077278 ENSMUST00000104090 Gm22778 snoRNA Interval_133435 chr6 5006438 5006868 + 0 NA intron (ENSMUSG00000032827.15, intron 1 of 17) protein_coding-intron (ENSMUSG00000032827.15, intron 2 of 15) 47670 ENSMUSG00000097396.1 ENSMUSG00000097396 ENSMUST00000180645 Gm26556 TEC Interval_112072 chr4 34318116 34318659 + 0 NA Intergenic Intergenic -35656 ENSMUSG00000062554.7 ENSMUSG00000062554 ENSMUST00000122336 Gm12751 processed_pseudogene Interval_96916 chr2 129440174 129440373 + 0 NA Intergenic Intergenic -60877 ENSMUSG00000081888.1 ENSMUSG00000081888 ENSMUST00000122326 Spcs2-ps unprocessed_pseudogene Interval_160953 chr8 116269341 116270416 + 0 NA Intergenic Intergenic -82509 ENSMUSG00000110476.1 ENSMUSG00000110476 ENSMUST00000212419 4930422C21Rik lincRNA Interval_161783 chr8 122746503 122746806 + 0 NA intron (ENSMUSG00000110523.1, intron 1 of 2) protein_coding-intron (ENSMUSG00000092329.1, intron 1 of 15) 5671 ENSMUSG00000110523.1 ENSMUSG00000110523 ENSMUST00000212334 C230057M02Rik lincRNA Interval_10973 chr1 177702511 177703229 + 0 NA Intergenic Intergenic -26944 ENSMUSG00000015962.5 ENSMUSG00000015962 ENSMUST00000016106 1700016C15Rik protein_coding Interval_30107 chr11 89242059 89243741 + 0 NA Intergenic Intergenic 59432 ENSMUSG00000048616.4 ENSMUSG00000048616 ENSMUST00000061728 Nog protein_coding Interval_101782 chr3 9541492 9541887 + 0 NA intron (ENSMUSG00000040209.12, intron 1 of 9) protein_coding-intron (ENSMUSG00000040209.12, intron 2 of 8) 23610 ENSMUSG00000040209.12 ENSMUSG00000040209 ENSMUST00000192832 Zfp704 protein_coding Interval_131567 chr5 138163078 138166021 + 0 NA TTS (ENSMUSG00000029730.16) protein_coding-TTS (ENSMUSG00000029730.16) 855 ENSMUSG00000065394.1 ENSMUSG00000065394 ENSMUST00000083460 Mir25 miRNA Interval_21510 chr10 129012021 129012518 + 0 NA exon (ENSMUSG00000063374.4, exon 1 of 1) protein_coding-exon (ENSMUSG00000063374.4, exon 1 of 1) 1478 ENSMUSG00000063374.4 ENSMUSG00000063374 ENSMUST00000077460 Olfr763 protein_coding Interval_128851 chr5 115597156 115597452 + 0 NA intron (ENSMUSG00000041638.18, intron 30 of 57) protein_coding-intron (ENSMUSG00000041638.18, intron 30 of 57) 16355 ENSMUSG00000099047.1 ENSMUSG00000099047 ENSMUST00000184777 Mir7029 miRNA Interval_70934 chr17 16291472 16291679 + 0 NA Intergenic Intergenic 29525 ENSMUSG00000116614.1 ENSMUSG00000116614 ENSMUST00000231650 Gm46610 processed_pseudogene Interval_172795 chrX 49356450 49356996 + 0 NA intron (ENSMUSG00000086948.1, intron 1 of 3) antisense-intron (ENSMUSG00000086948.1, intron 1 of 3) -11486 ENSMUSG00000087369.1 ENSMUSG00000087369 ENSMUST00000144294 Gm14696 lincRNA Interval_33917 chr11 119391950 119393279 + 0 NA promoter-TSS (ENSMUSG00000070327.14) protein_coding-promoter-TSS (ENSMUSG00000070327.14) 2142 ENSMUSG00000088015.1 ENSMUSG00000088015 ENSMUST00000157390 Mir1932 miRNA Interval_93866 chr2 77746217 77746574 + 0 NA intron (ENSMUSG00000027016.17, intron 1 of 3) protein_coding-intron (ENSMUSG00000027016.17, intron 1 of 3) -43123 ENSMUSG00000027016.17 ENSMUSG00000027016 ENSMUST00000129077 Zfp385b protein_coding Interval_25824 chr11 51972810 51973928 + 0 NA intron (ENSMUSG00000020392.8, intron 3 of 3) protein_coding-intron (ENSMUSG00000020392.8, intron 2 of 2) 5477 ENSMUSG00000020392.8 ENSMUSG00000020392 ENSMUST00000127136 Cdkn2aipnl protein_coding Interval_34307 chr12 3284485 3284701 + 0 NA intron (ENSMUSG00000020671.9, intron 1 of 5) protein_coding-intron (ENSMUSG00000020671.9, intron 1 of 5) 25376 ENSMUSG00000020671.9 ENSMUSG00000020671 ENSMUST00000021001 Rab10 protein_coding Interval_103742 chr3 52267422 52270388 + 0 NA exon (ENSMUSG00000044167.6, exon 1 of 3) protein_coding-exon (ENSMUSG00000044167.6, exon 1 of 3) 530 ENSMUSG00000092405.1 ENSMUSG00000092405 ENSMUST00000174738 Gm20402 antisense Interval_33875 chr11 119123611 119124152 + 0 NA intron (ENSMUSG00000086547.1, intron 5 of 5) lincRNA-intron (ENSMUSG00000086547.1, intron 5 of 5) -12456 ENSMUSG00000086306.1 ENSMUSG00000086306 ENSMUST00000156576 Gm11754 lincRNA Interval_169490 chr9 98408921 98409594 + 0 NA intron (ENSMUSG00000032456.13, intron 4 of 4) protein_coding-intron (ENSMUSG00000032456.13, intron 4 of 4) -13704 ENSMUSG00000046402.10 ENSMUSG00000046402 ENSMUST00000052068 Rbp1 protein_coding Interval_39498 chr12 88642774 88642958 + 0 NA intron (ENSMUSG00000113997.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000114001.1, intron 1 of 3) 10597 ENSMUSG00000113997.1 ENSMUSG00000113997 ENSMUST00000222440 1700040E09Rik lincRNA Interval_174459 chrX 152731920 152732553 + 0 NA intron (ENSMUSG00000045180.13, intron 1 of 9) protein_coding-intron (ENSMUSG00000045180.13, intron 1 of 9) -49685 ENSMUSG00000025333.10 ENSMUSG00000025333 ENSMUST00000139310 Gpr143 protein_coding Interval_74641 chr17 54108416 54108673 + 0 NA Intergenic Intergenic 106172 ENSMUSG00000104810.1 ENSMUSG00000104810 ENSMUST00000198419 Gm5684 processed_pseudogene Interval_1189 chr1 16780450 16781141 + 0 NA Intergenic Intergenic -10657 ENSMUSG00000091020.3 ENSMUSG00000091020 ENSMUST00000071842 Gm5828 processed_pseudogene Interval_124579 chr5 51727786 51728083 + 0 NA Intergenic Intergenic 130841 ENSMUSG00000105663.1 ENSMUSG00000105663 ENSMUST00000195938 Gm43606 TEC Interval_124394 chr5 45495354 45496371 + 0 NA intron (ENSMUSG00000039682.12, intron 2 of 3) protein_coding-intron (ENSMUSG00000039682.12, intron 2 of 12) 2336 ENSMUSG00000039682.12 ENSMUSG00000039682 ENSMUST00000146811 Lap3 protein_coding Interval_112259 chr4 39049707 39049927 + 0 NA Intergenic Intergenic -194334 ENSMUSG00000085632.1 ENSMUSG00000085632 ENSMUST00000126314 Gm12381 lincRNA Interval_44784 chr13 48603106 48604028 + 0 NA intron (ENSMUSG00000038042.11, intron 2 of 10) protein_coding-intron (ENSMUSG00000038042.11, intron 2 of 9) 10066 ENSMUSG00000113037.1 ENSMUSG00000113037 ENSMUST00000221947 Gm36550 antisense Interval_36060 chr12 34664923 34665241 + 0 NA intron (ENSMUSG00000004698.11, intron 2 of 11) protein_coding-intron (ENSMUSG00000004698.11, intron 3 of 4) -36444 ENSMUSG00000113386.1 ENSMUSG00000113386 ENSMUST00000222121 Gm47357 sense_intronic Interval_109928 chr3 151846666 151847044 + 0 NA Intergenic Intergenic 10350 ENSMUSG00000105403.1 ENSMUSG00000105403 ENSMUST00000197392 Gm43618 TEC Interval_65804 chr16 28945210 28945484 + 0 NA Intergenic Intergenic 6008 ENSMUSG00000116861.1 ENSMUSG00000116861 ENSMUST00000232466 Gm8253 processed_pseudogene Interval_152967 chr7 140101574 140102810 + 0 NA promoter-TSS (ENSMUSG00000025466.19) protein_coding-promoter-TSS (ENSMUSG00000025466.19) 183 ENSMUSG00000025466.19 ENSMUSG00000025466 ENSMUST00000138197 Fuom protein_coding Interval_131264 chr5 136063888 136064481 + 0 NA exon (ENSMUSG00000006143.12, exon 6 of 6) protein_coding-exon (ENSMUSG00000006143.12, exon 6 of 6) 6917 ENSMUSG00000006143.12 ENSMUSG00000006143 ENSMUST00000122979 Upk3bl protein_coding Interval_49820 chr13 116523855 116524168 + 0 NA Intergenic Intergenic 139580 ENSMUSG00000114347.1 ENSMUSG00000114347 ENSMUST00000225601 Gm47913 lincRNA Interval_94799 chr2 94419512 94419717 + 0 NA intron (ENSMUSG00000027193.12, intron 10 of 11) protein_coding-intron (ENSMUSG00000027193.12, intron 11 of 13) 13463 ENSMUSG00000045464.5 ENSMUSG00000045464 ENSMUST00000152313 2810002D19Rik processed_transcript Interval_45203 chr13 53171559 53171768 + 0 NA intron (ENSMUSG00000021464.14, intron 1 of 8) protein_coding-intron (ENSMUSG00000021464.14, intron 1 of 8) 103995 ENSMUSG00000021464.14 ENSMUSG00000021464 ENSMUST00000149299 Ror2 protein_coding Interval_151090 chr7 118489855 118492363 + 0 NA exon (ENSMUSG00000095115.2, exon 1 of 1) protein_coding-exon (ENSMUSG00000095115.2, exon 1 of 1) 866 ENSMUSG00000095115.2 ENSMUSG00000095115 ENSMUST00000178344 Itpripl2 protein_coding Interval_60790 chr15 76788279 76789138 + 0 NA intron (ENSMUSG00000033697.16, intron 1 of 2) protein_coding-intron (ENSMUSG00000033697.16, intron 1 of 11) -8988 ENSMUSG00000090429.3 ENSMUSG00000090429 ENSMUST00000165535 Gm17271 processed_pseudogene Interval_160029 chr8 105892604 105895131 + 0 NA TTS (ENSMUSG00000036270.16) protein_coding-TTS (ENSMUSG00000036270.16) 295 ENSMUSG00000044287.6 ENSMUSG00000044287 ENSMUST00000118920 Nrn1l protein_coding Interval_164186 chr9 32313514 32313869 + 0 NA Intergenic Intergenic 30546 ENSMUSG00000032034.6 ENSMUSG00000032034 ENSMUST00000214223 Kcnj5 protein_coding Interval_41380 chr12 113179324 113179876 + 0 NA Intergenic Intergenic -6294 ENSMUSG00000105111.1 ENSMUSG00000105111 ENSMUST00000198975 Gm43310 processed_pseudogene Interval_83147 chr18 82146716 82148857 + 0 NA Intergenic Intergenic 110724 ENSMUSG00000117913.1 ENSMUSG00000117913 ENSMUST00000237813 Gm50294 lincRNA Interval_44202 chr13 41997367 41998214 + 0 NA Intergenic Intergenic -51544 ENSMUSG00000100071.1 ENSMUSG00000100071 ENSMUST00000186134 Gm28707 lincRNA Interval_61501 chr15 82015428 82016889 + 0 NA promoter-TSS (ENSMUSG00000022472.16) protein_coding-promoter-TSS (ENSMUSG00000022472.16) 5 ENSMUSG00000022472.16 ENSMUSG00000022472 ENSMUST00000089187 Desi1 protein_coding Interval_83178 chr18 82571559 82571789 + 0 NA intron (ENSMUSG00000041607.17, intron 2 of 4) protein_coding-intron (ENSMUSG00000041607.17, intron 4 of 6) 17128 ENSMUSG00000041607.17 ENSMUSG00000041607 ENSMUST00000150952 Mbp protein_coding Interval_20583 chr10 119204067 119205443 + 0 NA intron (ENSMUSG00000020114.12, intron 14 of 14) protein_coding-intron (ENSMUSG00000020114.12, intron 14 of 14) 7854 ENSMUSG00000020114.12 ENSMUSG00000020114 ENSMUST00000126373 Cand1 protein_coding Interval_103161 chr3 36098315 36099292 + 0 NA exon (ENSMUSG00000105419.1, exon 1 of 1) TEC-exon (ENSMUSG00000105419.1, exon 1 of 1) 1626 ENSMUSG00000105419.1 ENSMUSG00000105419 ENSMUST00000198622 Gm43205 TEC Interval_76710 chr17 83637441 83638140 + 0 NA Intergenic Intergenic -5895 ENSMUSG00000045053.2 ENSMUSG00000045053 ENSMUST00000051482 Kcng3 protein_coding Interval_63597 chr15 102256760 102259094 + 0 NA promoter-TSS (ENSMUSG00000001288.15) protein_coding-promoter-TSS (ENSMUSG00000001288.15) -5287 ENSMUSG00000001288.15 ENSMUSG00000001288 ENSMUST00000230330 Rarg protein_coding Interval_92763 chr2 65221897 65223263 + 0 NA intron (ENSMUSG00000034903.18, intron 1 of 2) protein_coding-intron (ENSMUSG00000034903.18, intron 1 of 12) -16176 ENSMUSG00000086881.1 ENSMUSG00000086881 ENSMUST00000137582 Gm13594 antisense Interval_149748 chr7 101128381 101129026 + 0 NA intron (ENSMUSG00000030691.15, intron 2 of 6) protein_coding-intron (ENSMUSG00000030691.15, intron 2 of 20) 26352 ENSMUSG00000083121.3 ENSMUSG00000083121 ENSMUST00000119683 Gm6341 processed_pseudogene Interval_92078 chr2 53030051 53030779 + 0 NA intron (ENSMUSG00000036053.17, intron 2 of 26) protein_coding-intron (ENSMUSG00000036053.17, intron 2 of 26) 160772 ENSMUSG00000061136.16 ENSMUSG00000061136 ENSMUST00000132031 Prpf40a protein_coding Interval_2944 chr1 51433153 51434215 + 0 NA Intergenic Intergenic 25247 ENSMUSG00000101702.1 ENSMUSG00000101702 ENSMUST00000189460 1700072G22Rik lincRNA Interval_86483 chr19 40998235 40998575 + 0 NA Intergenic Intergenic -3870 ENSMUSG00000061132.13 ENSMUSG00000061132 ENSMUST00000134568 Blnk protein_coding Interval_105488 chr3 86962937 86963389 + 0 NA Intergenic Intergenic -23388 ENSMUSG00000041750.13 ENSMUSG00000041750 ENSMUST00000041920 Cd1d2 polymorphic_pseudogene Interval_18282 chr10 84554239 84555010 + 0 NA Intergenic Intergenic -1286 ENSMUSG00000097076.1 ENSMUSG00000097076 ENSMUST00000181466 Platr7 lincRNA Interval_78822 chr18 20813516 20813949 + 0 NA Intergenic Intergenic 30860 ENSMUSG00000088549.1 ENSMUSG00000088549 ENSMUST00000157924 Gm24959 snRNA Interval_30440 chr11 94370505 94371198 + 0 NA intron (ENSMUSG00000020865.16, intron 8 of 30) protein_coding-intron (ENSMUSG00000020865.16, intron 8 of 30) 22125 ENSMUSG00000020865.16 ENSMUSG00000020865 ENSMUST00000126566 Abcc3 protein_coding Interval_137501 chr6 72776669 72776896 + 0 NA intron (ENSMUSG00000055799.13, intron 2 of 5) protein_coding-intron (ENSMUSG00000055799.13, intron 3 of 11) -24868 ENSMUSG00000104501.1 ENSMUSG00000104501 ENSMUST00000193564 Gm37736 TEC Interval_4234 chr1 71967387 71968521 + 0 NA intron (ENSMUSG00000101848.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000101848.1, intron 1 of 2) -36334 ENSMUSG00000059483.5 ENSMUSG00000059483 ENSMUST00000076314 Gm5528 processed_pseudogene Interval_36554 chr12 49514571 49515015 + 0 NA Intergenic Intergenic 15785 ENSMUSG00000112079.1 ENSMUSG00000112079 ENSMUST00000218898 Gm19599 processed_pseudogene Interval_10926 chr1 177090914 177091583 + 0 NA intron (ENSMUSG00000019699.16, intron 5 of 12) protein_coding-intron (ENSMUSG00000019699.16, intron 5 of 12) -15464 ENSMUSG00000102749.1 ENSMUSG00000102749 ENSMUST00000194506 Gm37598 TEC Interval_165994 chr9 55269785 55269958 + 0 NA intron (ENSMUSG00000032311.17, intron 2 of 3) protein_coding-intron (ENSMUSG00000032311.17, intron 3 of 3) 13754 ENSMUSG00000032311.17 ENSMUSG00000032311 ENSMUST00000133659 Nrg4 protein_coding Interval_2555 chr1 40313796 40314571 + 0 NA exon (ENSMUSG00000026072.12, exon 11 of 11) protein_coding-exon (ENSMUSG00000026072.12, exon 11 of 11) -10507 ENSMUSG00000070942.8 ENSMUSG00000070942 ENSMUST00000193388 Il1rl2 protein_coding Interval_62633 chr15 95827644 95830516 + 0 NA intron (ENSMUSG00000078648.3, intron 1 of 1) protein_coding-intron (ENSMUSG00000064210.7, intron 1 of 19) 992 ENSMUSG00000078648.3 ENSMUSG00000078648 ENSMUST00000168960 Gm17546 antisense Interval_121895 chr5 9242152 9242332 + 0 NA Intergenic Intergenic 19146 ENSMUSG00000080875.4 ENSMUSG00000080875 ENSMUST00000118351 Gm7332 processed_pseudogene Interval_90268 chr2 29440225 29441489 + 0 NA intron (ENSMUSG00000026799.15, intron 3 of 4) protein_coding-intron (ENSMUSG00000026799.15, intron 3 of 7) -18337 ENSMUSG00000089597.1 ENSMUSG00000089597 ENSMUST00000158972 Gm24976 rRNA Interval_16357 chr10 62442833 62443164 + 0 NA intron (ENSMUSG00000020079.15, intron 5 of 14) protein_coding-intron (ENSMUSG00000020079.15, intron 5 of 14) -6491 ENSMUSG00000097129.2 ENSMUSG00000097129 ENSMUST00000238598 4930507D05Rik bidirectional_promoter_lncRNA Interval_79653 chr18 34259041 34259809 + 0 NA intron (ENSMUSG00000005871.15, intron 1 of 1) protein_coding-intron (ENSMUSG00000005871.15, intron 1 of 8) 38501 ENSMUSG00000005871.15 ENSMUSG00000005871 ENSMUST00000167136 Apc protein_coding Interval_134127 chr6 21030397 21030608 + 0 NA Intergenic Intergenic -17260 ENSMUSG00000087831.1 ENSMUSG00000087831 ENSMUST00000157206 Gm23960 snoRNA Interval_93269 chr2 71580928 71581767 + 0 NA Intergenic Intergenic -35397 ENSMUSG00000023391.8 ENSMUSG00000023391 ENSMUST00000134249 Dlx2 protein_coding Interval_114780 chr4 85215665 85216325 + 0 NA intron (ENSMUSG00000028488.15, intron 1 of 7) protein_coding-intron (ENSMUSG00000028488.15, intron 1 of 8) 29767 ENSMUSG00000081862.1 ENSMUSG00000081862 ENSMUST00000121508 Gm12413 processed_pseudogene Interval_19009 chr10 93763067 93763621 + 0 NA Intergenic Intergenic -15316 ENSMUSG00000090610.3 ENSMUSG00000090610 ENSMUST00000170703 Gm3571 processed_pseudogene Interval_17027 chr10 70593997 70594254 + 0 NA intron (ENSMUSG00000037747.9, intron 1 of 4) protein_coding-intron (ENSMUSG00000037747.9, intron 1 of 4) 5165 ENSMUSG00000037747.9 ENSMUSG00000037747 ENSMUST00000160127 Phyhipl protein_coding Interval_9123 chr1 153786103 153786422 + 0 NA intron (ENSMUSG00000042641.19, intron 19 of 21) protein_coding-intron (ENSMUSG00000042641.19, intron 18 of 20) 34310 ENSMUSG00000066800.11 ENSMUSG00000066800 ENSMUST00000182016 Rnasel protein_coding Interval_36098 chr12 35770424 35770837 + 0 NA Intergenic Intergenic -2321 ENSMUSG00000114167.1 ENSMUSG00000114167 ENSMUST00000221386 Gm7002 processed_pseudogene Interval_65143 chr16 20153931 20154188 + 0 NA intron (ENSMUSG00000041215.16, intron 1 of 27) protein_coding-intron (ENSMUSG00000041215.16, intron 2 of 29) 22953 ENSMUSG00000084838.3 ENSMUSG00000084838 ENSMUST00000117664 Gm10241 processed_pseudogene Interval_73868 chr17 45007374 45007556 + 0 NA intron (ENSMUSG00000038954.14, intron 5 of 10) protein_coding-intron (ENSMUSG00000038954.14, intron 6 of 11) -127170 ENSMUSG00000117326.1 ENSMUSG00000117326 ENSMUST00000233907 4930564C03Rik processed_pseudogene Interval_3223 chr1 54982176 54984241 + 0 NA Intergenic Intergenic 44186 ENSMUSG00000025982.13 ENSMUSG00000025982 ENSMUST00000188419 Sf3b1 protein_coding Interval_27557 chr11 68681403 68682305 + 0 NA Intergenic Intergenic -10300 ENSMUSG00000020900.15 ENSMUSG00000020900 ENSMUST00000139059 Myh10 protein_coding Interval_65651 chr16 24831771 24832477 + 0 NA intron (ENSMUSG00000033306.15, intron 3 of 7) protein_coding-intron (ENSMUSG00000033306.15, intron 8 of 12) 4269 ENSMUSG00000065494.1 ENSMUSG00000065494 ENSMUST00000083560 Mir28a miRNA Interval_146685 chr7 49425861 49426538 + 0 NA intron (ENSMUSG00000052512.17, intron 6 of 38) protein_coding-intron (ENSMUSG00000052512.17, intron 5 of 5) -43513 ENSMUSG00000102148.1 ENSMUSG00000102148 ENSMUST00000193746 Gm38059 TEC Interval_150054 chr7 105444629 105445756 + 0 NA intron (ENSMUSG00000030898.15, intron 4 of 4) protein_coding-intron (ENSMUSG00000030898.15, intron 4 of 4) 19375 ENSMUSG00000030898.15 ENSMUSG00000030898 ENSMUST00000181339 Cckbr protein_coding Interval_149997 chr7 104369831 104370595 + 0 NA promoter-TSS (ENSMUSG00000052749.9) protein_coding-promoter-TSS (ENSMUSG00000052749.9) -11567 ENSMUSG00000052749.9 ENSMUSG00000052749 ENSMUST00000164410 Trim30b protein_coding Interval_25854 chr11 52156747 52157608 + 0 NA promoter-TSS (ENSMUSG00000108218.2) transcribed_unprocessed_pseudogene-promoter-TSS (ENSMUSG00000108218.2) 10982 ENSMUSG00000108218.2 ENSMUSG00000108218 ENSMUST00000121007 Olfr1372-ps1 transcribed_unprocessed_pseudogene Interval_76784 chr17 84026150 84029038 + 0 NA Intergenic Intergenic -1575 ENSMUSG00000117446.1 ENSMUSG00000117446 ENSMUST00000234353 Gm35551 lincRNA Interval_69645 chr16 94809253 94809787 + 0 NA intron (ENSMUSG00000043301.16, intron 3 of 3) protein_coding-intron (ENSMUSG00000043301.16, intron 3 of 4) 47152 ENSMUSG00000043301.16 ENSMUSG00000043301 ENSMUST00000231744 Kcnj6 protein_coding Interval_154894 chr8 24897047 24898218 + 0 NA intron (ENSMUSG00000037437.18, intron 12 of 21) protein_coding-intron (ENSMUSG00000037437.18, intron 12 of 19) -40668 ENSMUSG00000088736.1 ENSMUSG00000088736 ENSMUST00000158111 Gm23898 snRNA Interval_4409 chr1 73966406 73967331 + 0 NA intron (ENSMUSG00000055322.16, intron 18 of 32) protein_coding-intron (ENSMUSG00000055322.16, intron 18 of 34) -111293 ENSMUSG00000098504.1 ENSMUSG00000098504 ENSMUST00000183826 Mir6351 miRNA Interval_102711 chr3 30520836 30521123 + 0 NA intron (ENSMUSG00000027684.16, intron 2 of 8) protein_coding-intron (ENSMUSG00000027684.16, intron 2 of 8) -17166 ENSMUSG00000103738.1 ENSMUSG00000103738 ENSMUST00000195290 Gm37652 TEC Interval_163637 chr9 22886025 22886482 + 0 NA intron (ENSMUSG00000035919.16, intron 21 of 22) protein_coding-intron (ENSMUSG00000035919.16, intron 20 of 21) -113418 ENSMUSG00000098940.1 ENSMUSG00000098940 ENSMUST00000184937 Gm27639 snRNA Interval_140220 chr6 115644563 115645236 + 0 NA intron (ENSMUSG00000000441.17, intron 1 of 6) protein_coding-intron (ENSMUSG00000000441.17, intron 1 of 16) -5840 ENSMUSG00000081805.1 ENSMUSG00000081805 ENSMUST00000119165 Gm14335 processed_pseudogene Interval_4416 chr1 74024551 74025219 + 0 NA intron (ENSMUSG00000055322.16, intron 3 of 32) protein_coding-intron (ENSMUSG00000055322.16, intron 3 of 34) 73791 ENSMUSG00000055322.16 ENSMUSG00000055322 ENSMUST00000190599 Tns1 protein_coding Interval_115483 chr4 99318479 99318898 + 0 NA Intergenic Intergenic 22788 ENSMUSG00000070891.2 ENSMUSG00000070891 ENSMUST00000094955 Gm12689 protein_coding Interval_112858 chr4 45568258 45569804 + 0 NA Intergenic Intergenic 19014 ENSMUSG00000081559.3 ENSMUSG00000081559 ENSMUST00000119140 Gm12411 processed_pseudogene Interval_123434 chr5 32505521 32505922 + 0 NA intron (ENSMUSG00000014956.15, intron 8 of 8) protein_coding-intron (ENSMUSG00000014956.15, intron 8 of 8) -25836 ENSMUSG00000080753.1 ENSMUSG00000080753 ENSMUST00000118396 Gm15613 processed_pseudogene Interval_108532 chr3 128100324 128100616 + 0 NA Intergenic Intergenic 32890 ENSMUSG00000105816.4 ENSMUSG00000105816 ENSMUST00000198275 D030025E07Rik processed_transcript Interval_75432 chr17 66514540 66514965 + 0 NA intron (ENSMUSG00000023460.13, intron 1 of 5) protein_coding-intron (ENSMUSG00000023460.13, intron 1 of 5) 4918 ENSMUSG00000023460.13 ENSMUSG00000023460 ENSMUST00000146279 Rab12 protein_coding Interval_60609 chr15 75657347 75657600 + 0 NA intron (ENSMUSG00000000934.9, intron 13 of 13) protein_coding-intron (ENSMUSG00000000934.9, intron 13 of 13) -3934 ENSMUSG00000085523.1 ENSMUSG00000085523 ENSMUST00000146755 Gm15945 antisense Interval_162178 chr8 125719096 125720382 + 0 NA Intergenic Intergenic -16096 ENSMUSG00000031851.14 ENSMUSG00000031851 ENSMUST00000152189 Ntpcr protein_coding Interval_90440 chr2 30452584 30453299 + 0 NA Intergenic Intergenic 21278 ENSMUSG00000089762.3 ENSMUSG00000089762 ENSMUST00000065134 Ier5l protein_coding Interval_87578 chr19 53552052 53552972 + 0 NA Intergenic Intergenic -22857 ENSMUSG00000118210.1 ENSMUSG00000118210 ENSMUST00000236686 Gm50394 antisense Interval_2870 chr1 46997953 46998241 + 0 NA Intergenic Intergenic -69691 ENSMUSG00000101921.1 ENSMUSG00000101921 ENSMUST00000186233 Gm28825 processed_pseudogene Interval_95558 chr2 112261718 112263011 + 0 NA exon (ENSMUSG00000027133.3, exon 2 of 2) protein_coding-exon (ENSMUSG00000027133.3, exon 2 of 2) 438 ENSMUSG00000027133.3 ENSMUSG00000027133 ENSMUST00000028553 Nop10 protein_coding Interval_35324 chr12 20628206 20628642 + 0 NA intron (ENSMUSG00000113157.2, intron 1 of 1) lincRNA-intron (ENSMUSG00000116883.1, intron 1 of 4) 13081 ENSMUSG00000116883.1 ENSMUSG00000116883 ENSMUST00000222348 Gm49700 lincRNA Interval_124524 chr5 50024296 50024539 + 0 NA intron (ENSMUSG00000029090.12, intron 2 of 18) protein_coding-intron (ENSMUSG00000029090.12, intron 2 of 18) 34228 ENSMUSG00000029090.12 ENSMUSG00000029090 ENSMUST00000199132 Adgra3 protein_coding Interval_12969 chr10 8823645 8823977 + 0 NA TTS (ENSMUSG00000065692.1) snoRNA-TTS (ENSMUSG00000065692.1) 336 ENSMUSG00000065692.1 ENSMUSG00000065692 ENSMUST00000083758 Gm25410 snoRNA Interval_130598 chr5 129103598 129104793 + 0 NA intron (ENSMUSG00000044017.16, intron 2 of 24) protein_coding-intron (ENSMUSG00000044017.16, intron 2 of 25) 7438 ENSMUSG00000044017.16 ENSMUSG00000044017 ENSMUST00000156437 Adgrd1 protein_coding Interval_141338 chr6 127392729 127393216 + 0 NA Intergenic Intergenic -18158 ENSMUSG00000106883.1 ENSMUSG00000106883 ENSMUST00000200875 Gm34091 processed_pseudogene Interval_129303 chr5 118789595 118790180 + 0 NA Intergenic Intergenic 39500 ENSMUSG00000018076.12 ENSMUSG00000018076 ENSMUST00000202787 Med13l protein_coding Interval_9458 chr1 157346832 157347069 + 0 NA TTS (ENSMUSG00000102326.1) TEC-TTS (ENSMUSG00000102326.1) 3093 ENSMUSG00000102326.1 ENSMUSG00000102326 ENSMUST00000193958 Gm37788 TEC Interval_104094 chr3 58545503 58546492 + 0 NA TTS (ENSMUSG00000027810.14) protein_coding-TTS (ENSMUSG00000027810.14) 19067 ENSMUSG00000106553.1 ENSMUSG00000106553 ENSMUST00000199552 6720482G16Rik TEC Interval_6201 chr1 101671505 101671998 + 0 NA Intergenic Intergenic 82792 ENSMUSG00000100065.1 ENSMUSG00000100065 ENSMUST00000189423 Gm18969 processed_pseudogene Interval_2691 chr1 43471664 43472473 + 0 NA intron (ENSMUSG00000066877.11, intron 1 of 4) protein_coding-intron (ENSMUSG00000066877.11, intron 1 of 4) -16379 ENSMUSG00000103422.1 ENSMUSG00000103422 ENSMUST00000194710 Gm37536 TEC Interval_154119 chr8 12873157 12874389 + 0 NA promoter-TSS (ENSMUSG00000031442.21) protein_coding-promoter-TSS (ENSMUSG00000031442.21) 3571 ENSMUSG00000085465.1 ENSMUSG00000085465 ENSMUST00000145372 Gm15347 antisense Interval_173255 chrX 75475301 75475640 + 0 NA promoter-TSS (ENSMUSG00000048709.6) processed_pseudogene-promoter-TSS (ENSMUSG00000048709.6) 53 ENSMUSG00000048709.6 ENSMUSG00000048709 ENSMUST00000117517 Gm8666 processed_pseudogene Interval_65493 chr16 22778011 22779004 + 0 NA Intergenic Intergenic 33070 ENSMUSG00000033501.5 ENSMUSG00000033501 ENSMUST00000040592 Crygs protein_coding Interval_65230 chr16 20701329 20702917 + 0 NA TTS (ENSMUSG00000022843.17) protein_coding-TTS (ENSMUSG00000022843.17) 8872 ENSMUSG00000050821.14 ENSMUSG00000050821 ENSMUST00000128273 Fam131a protein_coding Interval_50109 chr14 8052028 8052937 + 0 NA intron (ENSMUSG00000025277.14, intron 7 of 7) protein_coding-intron (ENSMUSG00000025277.14, intron 8 of 8) -37596 ENSMUSG00000023156.4 ENSMUSG00000023156 ENSMUST00000180369 Rpp14 protein_coding Interval_130895 chr5 133685842 133687210 + 0 NA Intergenic Intergenic -88120 ENSMUSG00000105227.1 ENSMUSG00000105227 ENSMUST00000196125 Gm36667 lincRNA Interval_151332 chr7 121128718 121129075 + 0 NA intron (ENSMUSG00000034990.15, intron 5 of 17) protein_coding-intron (ENSMUSG00000034990.15, intron 15 of 28) 47246 ENSMUSG00000034990.15 ENSMUSG00000034990 ENSMUST00000163275 Otoa protein_coding Interval_148769 chr7 86617171 86618291 + 0 NA Intergenic Intergenic -1088 ENSMUSG00000062042.1 ENSMUSG00000062042 ENSMUST00000078588 Olfr294 protein_coding Interval_127238 chr5 101809682 101810012 + 0 NA promoter-TSS (ENSMUSG00000105632.1) TEC-promoter-TSS (ENSMUSG00000105632.1) -645 ENSMUSG00000105632.1 ENSMUSG00000105632 ENSMUST00000200599 Gm43272 TEC Interval_17642 chr10 78428208 78428797 + 0 NA TTS (ENSMUSG00000005054.7) protein_coding-TTS (ENSMUSG00000005054.7) 231 ENSMUSG00000112652.1 ENSMUSG00000112652 ENSMUST00000218544 4921516A02Rik antisense Interval_56472 chr14 118982693 118983390 + 0 NA TTS (ENSMUSG00000115220.1) lincRNA-TTS (ENSMUSG00000115220.1) 719 ENSMUSG00000115220.1 ENSMUSG00000115220 ENSMUST00000227218 Gm49768 lincRNA Interval_163574 chr9 22299455 22300694 + 0 NA intron (ENSMUSG00000066829.7, intron 2 of 3) protein_coding-intron (ENSMUSG00000066829.7, intron 2 of 7) -3387 ENSMUSG00000111808.1 ENSMUSG00000111808 ENSMUST00000216708 Gm18225 unprocessed_pseudogene Interval_54877 chr14 75954472 75955715 + 0 NA promoter-TSS (ENSMUSG00000046523.5) protein_coding-promoter-TSS (ENSMUSG00000046523.5) 84 ENSMUSG00000046523.5 ENSMUSG00000046523 ENSMUST00000050120 Kctd4 protein_coding Interval_124953 chr5 61811729 61812056 + 0 NA TTS (ENSMUSG00000089992.3) protein_coding-TTS (ENSMUSG00000089992.3) 3076 ENSMUSG00000089992.3 ENSMUSG00000089992 ENSMUST00000053876 G6pd2 protein_coding Interval_106286 chr3 95139686 95140807 + 0 NA TTS (ENSMUSG00000053769.5) protein_coding-TTS (ENSMUSG00000053769.5) -1060 ENSMUSG00000098498.1 ENSMUSG00000098498 ENSMUST00000184238 Mir8099-1 miRNA Interval_17695 chr10 79574352 79574733 + 0 NA Intergenic Intergenic 5578 ENSMUSG00000020317.14 ENSMUSG00000020317 ENSMUST00000020566 Theg protein_coding Interval_163332 chr9 20916301 20917003 + 0 NA intron (ENSMUSG00000004099.16, intron 27 of 38) protein_coding-intron (ENSMUSG00000004099.16, intron 27 of 38) -2488 ENSMUSG00000099147.1 ENSMUSG00000099147 ENSMUST00000184490 Mir7081 miRNA Interval_160321 chr8 108361720 108361913 + 0 NA intron (ENSMUSG00000038872.10, intron 3 of 15) protein_coding-intron (ENSMUSG00000038872.10, intron 3 of 15) 175405 ENSMUSG00000109868.1 ENSMUSG00000109868 ENSMUST00000211262 Gm39244 lincRNA Interval_74401 chr17 49942262 49943108 + 0 NA Intergenic Intergenic 15046 ENSMUSG00000118549.1 ENSMUSG00000118549 ENSMUST00000239022 AC114824.1 unprocessed_pseudogene Interval_59088 chr15 43476812 43477761 + 0 NA promoter-TSS (ENSMUSG00000022337.7) protein_coding-promoter-TSS (ENSMUSG00000022337.7) 45 ENSMUSG00000022337.7 ENSMUSG00000022337 ENSMUST00000227055 Emc2 protein_coding Interval_50243 chr14 11130561 11131021 + 0 NA intron (ENSMUSG00000060579.13, intron 1 of 8) protein_coding-intron (ENSMUSG00000060579.13, intron 1 of 9) -31399 ENSMUSG00000089785.2 ENSMUSG00000089785 ENSMUST00000162199 Slc25a5-ps transcribed_processed_pseudogene Interval_58404 chr15 34191983 34192674 + 0 NA Intergenic Intergenic -52952 ENSMUSG00000089072.1 ENSMUSG00000089072 ENSMUST00000158447 Gm24500 snoRNA Interval_147205 chr7 64497232 64497713 + 0 NA Intergenic Intergenic -17839 ENSMUSG00000108384.1 ENSMUSG00000108384 ENSMUST00000206082 Gm45082 TEC Interval_120141 chr4 142982559 142983704 + 0 NA intron (ENSMUSG00000110067.2, intron 1 of 1) protein_coding-intron (ENSMUSG00000110067.2, intron 1 of 2) 90635 ENSMUSG00000110067.2 ENSMUSG00000110067 ENSMUST00000238915 6330411D24Rik protein_coding Interval_93882 chr2 77918076 77918272 + 0 NA intron (ENSMUSG00000027014.14, intron 11 of 11) protein_coding-intron (ENSMUSG00000027014.14, intron 12 of 20) 18553 ENSMUSG00000027014.14 ENSMUSG00000027014 ENSMUST00000156863 Cwc22 protein_coding Interval_128277 chr5 112240615 112241130 + 0 NA Intergenic Intergenic 11646 ENSMUSG00000066975.12 ENSMUSG00000066975 ENSMUST00000086629 Cryba4 protein_coding Interval_75558 chr17 68010263 68010890 + 0 NA Intergenic Intergenic 103810 ENSMUSG00000117208.1 ENSMUSG00000117208 ENSMUST00000233735 Gm49945 lincRNA Interval_25735 chr11 51219506 51221136 + 0 NA promoter-TSS (ENSMUSG00000061469.3) protein_coding-promoter-TSS (ENSMUSG00000061469.3) 97 ENSMUSG00000086646.7 ENSMUSG00000086646 ENSMUST00000137964 Platr20 lincRNA Interval_54339 chr14 67801553 67802124 + 0 NA intron (ENSMUSG00000044447.5, intron 26 of 51) protein_coding-intron (ENSMUSG00000044447.5, intron 26 of 51) -36879 ENSMUSG00000044447.5 ENSMUSG00000044447 ENSMUST00000224823 Dock5 protein_coding Interval_103593 chr3 50963000 50964033 + 0 NA Intergenic Intergenic 15295 ENSMUSG00000103652.1 ENSMUSG00000103652 ENSMUST00000194109 Gm37209 TEC Interval_2453 chr1 39465738 39466825 + 0 NA intron (ENSMUSG00000003134.10, intron 1 of 18) protein_coding-intron (ENSMUSG00000003134.10, intron 1 of 19) -46349 ENSMUSG00000102607.1 ENSMUSG00000102607 ENSMUST00000191698 Gm37265 TEC Interval_57517 chr15 12019266 12020058 + 0 NA Intergenic Intergenic 12265 ENSMUSG00000107344.1 ENSMUSG00000107344 ENSMUST00000201323 Gm2559 processed_pseudogene Interval_134103 chr6 20111750 20112109 + 0 NA Intergenic Intergenic 323876 ENSMUSG00000107067.1 ENSMUSG00000107067 ENSMUST00000201774 Gm42581 processed_pseudogene Interval_141690 chr6 133495015 133495226 + 0 NA Intergenic Intergenic -34102 ENSMUSG00000095412.3 ENSMUSG00000095412 ENSMUST00000203357 Gm5885 transcribed_unprocessed_pseudogene Interval_117614 chr4 125058907 125059728 + 0 NA intron (ENSMUSG00000042707.6, intron 4 of 5) protein_coding-intron (ENSMUSG00000042707.6, intron 4 of 5) 6166 ENSMUSG00000028869.13 ENSMUSG00000028869 ENSMUST00000147550 Gnl2 protein_coding Interval_163194 chr9 17856305 17856566 + 0 NA Intergenic Intergenic -70648 ENSMUSG00000111161.1 ENSMUSG00000111161 ENSMUST00000217305 Gm48849 processed_pseudogene Interval_3030 chr1 52341999 52342214 + 0 NA Intergenic Intergenic -53011 ENSMUSG00000099648.1 ENSMUSG00000099648 ENSMUST00000185256 Gm5975 processed_pseudogene Interval_69191 chr16 91230338 91230580 + 0 NA Intergenic Intergenic 5002 ENSMUSG00000039830.9 ENSMUSG00000039830 ENSMUST00000035608 Olig2 protein_coding Interval_4023 chr1 66677273 66679840 + 0 NA intron (ENSMUSG00000055567.18, intron 57 of 63) protein_coding-intron (ENSMUSG00000055567.18, intron 58 of 64) 13800 ENSMUSG00000103375.1 ENSMUSG00000103375 ENSMUST00000192513 Gm37181 TEC Interval_93365 chr2 72440697 72441323 + 0 NA intron (ENSMUSG00000004085.14, intron 19 of 19) protein_coding-intron (ENSMUSG00000004085.14, intron 19 of 19) -35243 ENSMUSG00000055612.15 ENSMUSG00000055612 ENSMUST00000137880 Cdca7 protein_coding Interval_101834 chr3 9827718 9827933 + 0 NA exon (ENSMUSG00000027508.15, exon 2 of 2) protein_coding-exon (ENSMUSG00000027508.15, exon 2 of 2) 1903 ENSMUSG00000088004.1 ENSMUSG00000088004 ENSMUST00000157379 Gm24786 rRNA Interval_59521 chr15 54952047 54953027 + 0 NA promoter-TSS (ENSMUSG00000097286.2) bidirectional_promoter_lncRNA-promoter-TSS (ENSMUSG00000097286.2) 467 ENSMUSG00000097286.2 ENSMUSG00000097286 ENSMUST00000181704 Gm26684 bidirectional_promoter_lncRNA Interval_82580 chr18 75275210 75275456 + 0 NA intron (ENSMUSG00000035765.10, intron 16 of 16) protein_coding-intron (ENSMUSG00000035765.10, intron 16 of 16) 21984 ENSMUSG00000102047.1 ENSMUSG00000102047 ENSMUST00000186356 2010010A06Rik transcribed_processed_pseudogene Interval_95109 chr2 103975747 103975970 + 0 NA intron (ENSMUSG00000032698.15, intron 1 of 2) protein_coding-intron (ENSMUSG00000032698.15, intron 1 of 1) 17863 ENSMUSG00000032698.15 ENSMUSG00000032698 ENSMUST00000133210 Lmo2 protein_coding Interval_10657 chr1 172499760 172502663 + 0 NA promoter-TSS (ENSMUSG00000026547.15) protein_coding-promoter-TSS (ENSMUSG00000026547.15) 966 ENSMUSG00000026547.15 ENSMUSG00000026547 ENSMUST00000111228 Tagln2 protein_coding Interval_173513 chrX 97376219 97377526 + 0 NA intron (ENSMUSG00000034457.10, intron 1 of 7) protein_coding-intron (ENSMUSG00000034457.10, intron 1 of 7) 300 ENSMUSG00000034457.10 ENSMUSG00000034457 ENSMUST00000126609 Eda2r protein_coding Interval_27388 chr11 67191664 67192004 + 0 NA intron (ENSMUSG00000033196.17, intron 30 of 39) protein_coding-intron (ENSMUSG00000033196.17, intron 29 of 38) 7400 ENSMUSG00000085479.1 ENSMUSG00000085479 ENSMUST00000145346 9430073C21Rik antisense Interval_33125 chr11 114612608 114612841 + 0 NA Intergenic Intergenic -51884 ENSMUSG00000083769.1 ENSMUSG00000083769 ENSMUST00000120766 Gm11689 processed_pseudogene Interval_31158 chr11 98528487 98528868 + 0 NA intron (ENSMUSG00000018168.8, intron 1 of 2) protein_coding-intron (ENSMUSG00000018168.8, intron 1 of 7) -26766 ENSMUSG00000017195.15 ENSMUSG00000017195 ENSMUST00000126236 Zpbp2 protein_coding Interval_115405 chr4 98702287 98703131 + 0 NA intron (ENSMUSG00000061859.17, intron 42 of 44) protein_coding-intron (ENSMUSG00000061859.17, intron 42 of 43) -30494 ENSMUSG00000087166.9 ENSMUSG00000087166 ENSMUST00000173659 L1td1 protein_coding Interval_30208 chr11 90623065 90623925 + 0 NA intron (ENSMUSG00000020546.14, intron 1 of 17) protein_coding-intron (ENSMUSG00000020546.14, intron 1 of 15) 14589 ENSMUSG00000020546.14 ENSMUSG00000020546 ENSMUST00000132078 Stxbp4 protein_coding Interval_112527 chr4 42865740 42866212 + 0 NA Intergenic Intergenic 8258 ENSMUSG00000050141.13 ENSMUSG00000050141 ENSMUST00000144112 Fam205c protein_coding Interval_66550 chr16 35033028 35033981 + 0 NA intron (ENSMUSG00000035376.10, intron 2 of 2) protein_coding-intron (ENSMUSG00000035376.10, intron 2 of 6) -10604 ENSMUSG00000116840.1 ENSMUSG00000116840 ENSMUST00000232358 Gm21691 antisense Interval_158540 chr8 84340349 84341165 + 0 NA intron (ENSMUSG00000034656.18, intron 1 of 48) protein_coding-intron (ENSMUSG00000034656.18, intron 1 of 48) 2118 ENSMUSG00000034656.18 ENSMUSG00000034656 ENSMUST00000130507 Cacna1a protein_coding Interval_167002 chr9 64436081 64436267 + 0 NA intron (ENSMUSG00000036466.17, intron 1 of 24) protein_coding-intron (ENSMUSG00000036466.17, intron 1 of 24) 50548 ENSMUSG00000036466.17 ENSMUSG00000036466 ENSMUST00000153934 Megf11 protein_coding Interval_151456 chr7 122684547 122684769 + 0 NA intron (ENSMUSG00000066189.9, intron 1 of 2) protein_coding-intron (ENSMUSG00000066189.9, intron 1 of 3) 13267 ENSMUSG00000066189.9 ENSMUSG00000066189 ENSMUST00000182095 Cacng3 protein_coding Interval_152932 chr7 139874621 139875634 + 0 NA exon (ENSMUSG00000025475.17, exon 8 of 8) protein_coding-exon (ENSMUSG00000025475.17, exon 8 of 8) 13224 ENSMUSG00000109710.1 ENSMUSG00000109710 ENSMUST00000209974 Gm4974 processed_pseudogene Interval_10343 chr1 169740259 169740569 + 0 NA Intergenic Intergenic 7209 ENSMUSG00000038530.11 ENSMUSG00000038530 ENSMUST00000132567 Rgs4 protein_coding Interval_102383 chr3 22932495 22933265 + 0 NA Intergenic Intergenic 120673 ENSMUSG00000102233.1 ENSMUSG00000102233 ENSMUST00000194174 Gm37889 TEC Interval_132185 chr5 143179485 143181194 + 0 NA promoter-TSS (ENSMUSG00000029586.9) protein_coding-promoter-TSS (ENSMUSG00000029586.9) 393 ENSMUSG00000061898.10 ENSMUSG00000061898 ENSMUST00000199880 Rbak protein_coding Interval_145114 chr7 30116032 30116627 + 0 NA Intergenic Intergenic -9286 ENSMUSG00000074220.10 ENSMUSG00000074220 ENSMUST00000156543 Zfp382 protein_coding Interval_48173 chr13 96991014 96991804 + 0 NA Intergenic Intergenic 23890 ENSMUSG00000113934.1 ENSMUSG00000113934 ENSMUST00000222278 Gm48609 processed_pseudogene Interval_53685 chr14 60875189 60875659 + 0 NA intron (ENSMUSG00000021993.10, intron 18 of 19) protein_coding-intron (ENSMUSG00000021993.10, intron 18 of 18) 90842 ENSMUSG00000021993.10 ENSMUSG00000021993 ENSMUST00000223709 Mipep protein_coding Interval_32230 chr11 106329832 106330631 + 0 NA exon (ENSMUSG00000001027.7, exon 14 of 24) protein_coding-exon (ENSMUSG00000001027.7, exon 14 of 24) -15702 ENSMUSG00000040592.11 ENSMUSG00000040592 ENSMUST00000167143 Cd79b protein_coding Interval_70987 chr17 17017397 17019063 + 0 NA Intergenic Intergenic -45883 ENSMUSG00000096696.1 ENSMUSG00000096696 ENSMUST00000127027 Zfp960 protein_coding Interval_34067 chr11 120286613 120287951 + 0 NA exon (ENSMUSG00000039741.15, exon 26 of 28) protein_coding-exon (ENSMUSG00000039741.15, exon 26 of 28) -2511 ENSMUSG00000039741.15 ENSMUSG00000039741 ENSMUST00000143667 Bahcc1 protein_coding Interval_29632 chr11 85672973 85673308 + 0 NA intron (ENSMUSG00000059439.15, intron 1 of 4) protein_coding-intron (ENSMUSG00000059439.15, intron 23 of 24) 46604 ENSMUSG00000086199.7 ENSMUSG00000086199 ENSMUST00000146806 Bcas3os1 antisense Interval_156951 chr8 62216511 62217354 + 0 NA Intergenic Intergenic -22720 ENSMUSG00000110252.1 ENSMUSG00000110252 ENSMUST00000211074 Gm2961 processed_pseudogene Interval_71525 chr17 24306868 24307934 + 0 NA intron (ENSMUSG00000035435.17, intron 13 of 30) protein_coding-intron (ENSMUSG00000035435.17, intron 12 of 29) 2732 ENSMUSG00000094175.1 ENSMUSG00000094175 ENSMUST00000116896 Gm24427 miRNA Interval_76519 chr17 80727439 80729340 + 0 NA promoter-TSS (ENSMUSG00000024242.15) protein_coding-promoter-TSS (ENSMUSG00000024242.15) 258 ENSMUSG00000054957.5 ENSMUSG00000054957 ENSMUST00000068277 Gm9959 pseudogene Interval_152969 chr7 140125278 140126363 + 0 NA exon (ENSMUSG00000025464.15, exon 1 of 7) protein_coding-exon (ENSMUSG00000025464.15, exon 1 of 7) -9398 ENSMUSG00000025465.13 ENSMUSG00000025465 ENSMUST00000211120 Echs1 protein_coding Interval_160294 chr8 107820556 107822274 + 0 NA Intergenic Intergenic -19542 ENSMUSG00000095727.1 ENSMUSG00000095727 ENSMUST00000178119 Gm23646 miRNA Interval_19357 chr10 97704712 97705096 + 0 NA intron (ENSMUSG00000074776.4, intron 4 of 4) lincRNA-intron (ENSMUSG00000074776.4, intron 4 of 4) -9881 ENSMUSG00000112497.1 ENSMUSG00000112497 ENSMUST00000219383 4930525C09Rik lincRNA Interval_33318 chr11 115894842 115895188 + 0 NA TTS (ENSMUSG00000020752.11) protein_coding-TTS (ENSMUSG00000020752.11) -4951 ENSMUSG00000048442.15 ENSMUSG00000048442 ENSMUST00000131566 Smim5 protein_coding Interval_45831 chr13 58410241 58410532 + 0 NA TTS (ENSMUSG00000035367.9) protein_coding-TTS (ENSMUSG00000035367.9) 8138 ENSMUSG00000035367.9 ENSMUSG00000035367 ENSMUST00000224479 Rmi1 protein_coding Interval_19515 chr10 101511602 101511852 + 0 NA Intergenic Intergenic -32450 ENSMUSG00000087723.1 ENSMUSG00000087723 ENSMUST00000157098 Gm26278 snoRNA Interval_72755 chr17 31945037 31945699 + 0 NA TTS (ENSMUSG00000002076.12) protein_coding-TTS (ENSMUSG00000002076.12) -5166 ENSMUSG00000091548.2 ENSMUSG00000091548 ENSMUST00000171455 Gm17572 processed_pseudogene Interval_27886 chr11 70627163 70627473 + 0 NA Intergenic Intergenic -1757 ENSMUSG00000085952.1 ENSMUSG00000085952 ENSMUST00000151599 Gm12315 lincRNA Interval_146142 chr7 44317764 44318499 + 0 NA intron (ENSMUSG00000038738.15, intron 6 of 24) protein_coding-intron (ENSMUSG00000038738.15, intron 5 of 22) 3380 ENSMUSG00000108719.1 ENSMUSG00000108719 ENSMUST00000206373 Gm44757 TEC Interval_163535 chr9 21950305 21950590 + 0 NA Intergenic Intergenic -5308 ENSMUSG00000051238.6 ENSMUSG00000051238 ENSMUST00000053583 Swsap1 protein_coding Interval_40361 chr12 104376940 104377826 + 0 NA intron (ENSMUSG00000079012.11, intron 1 of 4) protein_coding-intron (ENSMUSG00000079012.11, intron 1 of 4) -9781 ENSMUSG00000079012.11 ENSMUSG00000079012 ENSMUST00000168797 Serpina3m protein_coding Interval_173930 chrX 113054474 113055433 + 0 NA intron (ENSMUSG00000025531.14, intron 11 of 13) protein_coding-intron (ENSMUSG00000025531.14, intron 12 of 14) -7374 ENSMUSG00000025531.14 ENSMUSG00000025531 ENSMUST00000133469 Chm protein_coding Interval_167447 chr9 69419225 69419823 + 0 NA intron (ENSMUSG00000032235.15, intron 1 of 3) protein_coding-intron (ENSMUSG00000032235.15, intron 11 of 15) 17723 ENSMUSG00000111621.1 ENSMUSG00000111621 ENSMUST00000216464 Gm7802 processed_pseudogene Interval_133347 chr6 3536117 3536534 + 0 NA intron (ENSMUSG00000001376.17, intron 11 of 26) protein_coding-intron (ENSMUSG00000001376.17, intron 11 of 27) -47489 ENSMUSG00000107094.1 ENSMUSG00000107094 ENSMUST00000202850 Gm43294 TEC Interval_150428 chr7 110468446 110468992 + 0 NA intron (ENSMUSG00000038371.15, intron 2 of 39) protein_coding-intron (ENSMUSG00000038371.15, intron 3 of 40) -18999 ENSMUSG00000038371.15 ENSMUSG00000038371 ENSMUST00000167652 Sbf2 protein_coding Interval_116872 chr4 117871981 117873135 + 0 NA promoter-TSS (ENSMUSG00000078588.10) protein_coding-promoter-TSS (ENSMUSG00000078588.10) -38 ENSMUSG00000078588.10 ENSMUSG00000078588 ENSMUST00000166325 Ccdc24 protein_coding Interval_23022 chr11 19015729 19016303 + 0 NA TTS (ENSMUSG00000087507.1) antisense-TTS (ENSMUSG00000087507.1) 2199 ENSMUSG00000087507.1 ENSMUSG00000087507 ENSMUST00000152073 Gm16141 antisense Interval_92758 chr2 65170506 65170732 + 0 NA intron (ENSMUSG00000034903.18, intron 2 of 7) protein_coding-intron (ENSMUSG00000034903.18, intron 1 of 12) -68137 ENSMUSG00000086881.1 ENSMUSG00000086881 ENSMUST00000137582 Gm13594 antisense Interval_118137 chr4 129161620 129162701 + 0 NA TTS (ENSMUSG00000040928.15) protein_coding-TTS (ENSMUSG00000040928.15) 25161 ENSMUSG00000001334.9 ENSMUSG00000001334 ENSMUST00000102600 Fndc5 protein_coding Interval_84165 chr19 7939325 7939865 + 0 NA intron (ENSMUSG00000067656.13, intron 1 of 8) protein_coding-intron (ENSMUSG00000067656.13, intron 1 of 10) 20043 ENSMUSG00000076136.1 ENSMUSG00000076136 ENSMUST00000102182 Gm24951 miRNA Interval_50040 chr13 119896989 119898950 + 0 NA Intergenic Intergenic -3184 ENSMUSG00000096284.2 ENSMUSG00000096284 ENSMUST00000178510 Tcstv1 protein_coding Interval_24949 chr11 41857360 41857782 + 0 NA intron (ENSMUSG00000087306.7, intron 3 of 8) processed_transcript-intron (ENSMUSG00000087306.7, intron 3 of 8) 59052 ENSMUSG00000020436.17 ENSMUSG00000020436 ENSMUST00000109290 Gabrg2 protein_coding Interval_33889 chr11 119210477 119210921 + 0 NA TTS (ENSMUSG00000039976.4) protein_coding-TTS (ENSMUSG00000039976.4) -9461 ENSMUSG00000087404.1 ENSMUSG00000087404 ENSMUST00000143291 Gm11752 lincRNA Interval_162826 chr9 9696079 9696380 + 0 NA intron (ENSMUSG00000039488.15, intron 14 of 18) protein_coding-intron (ENSMUSG00000039488.15, intron 18 of 22) -25188 ENSMUSG00000092776.1 ENSMUSG00000092776 ENSMUST00000175035 Gm26195 miRNA Interval_115318 chr4 96141074 96141252 + 0 NA promoter-TSS (ENSMUSG00000081225.3) protein_coding-promoter-TSS (ENSMUSG00000081225.3) -11 ENSMUSG00000081225.3 ENSMUSG00000081225 ENSMUST00000097972 Cyp2j12 protein_coding Interval_150002 chr7 104501361 104502810 + 0 NA promoter-TSS (ENSMUSG00000082154.1) processed_pseudogene-promoter-TSS (ENSMUSG00000082154.1) 64 ENSMUSG00000082154.1 ENSMUSG00000082154 ENSMUST00000117815 Gm16464 processed_pseudogene Interval_14262 chr10 29953234 29954092 + 0 NA Intergenic Intergenic 47769 ENSMUSG00000111195.1 ENSMUSG00000111195 ENSMUST00000213166 Gm48215 lincRNA Interval_168724 chr9 86411792 86412483 + 0 NA intron (ENSMUSG00000032415.14, intron 8 of 9) protein_coding-intron (ENSMUSG00000032415.14, intron 8 of 9) 52813 ENSMUSG00000032415.14 ENSMUSG00000032415 ENSMUST00000121189 Ube2cbp protein_coding Interval_64495 chr16 12691778 12692286 + 0 NA intron (ENSMUSG00000116520.1, intron 5 of 11) lincRNA-intron (ENSMUSG00000116520.1, intron 5 of 11) -12336 ENSMUSG00000116197.1 ENSMUSG00000116197 ENSMUST00000230690 Gm38619 lincRNA Interval_50804 chr14 19936502 19936768 + 0 NA intron (ENSMUSG00000043004.13, intron 3 of 5) protein_coding-intron (ENSMUSG00000043004.13, intron 3 of 5) 40549 ENSMUSG00000043004.13 ENSMUSG00000043004 ENSMUST00000161247 Gng2 protein_coding Interval_19706 chr10 108215981 108216243 + 0 NA intron (ENSMUSG00000019907.10, intron 3 of 24) protein_coding-intron (ENSMUSG00000019907.10, intron 3 of 25) -33482 ENSMUSG00000019907.10 ENSMUSG00000019907 ENSMUST00000219559 Ppp1r12a protein_coding Interval_55292 chr14 80522407 80522964 + 0 NA Intergenic Intergenic 80280 ENSMUSG00000115036.1 ENSMUSG00000115036 ENSMUST00000227575 Gm49043 processed_pseudogene Interval_22874 chr11 16965493 16965713 + 0 NA Intergenic Intergenic 14228 ENSMUSG00000044966.4 ENSMUSG00000044966 ENSMUST00000061327 Fbxo48 protein_coding Interval_129328 chr5 119137047 119138233 + 0 NA Intergenic Intergenic 29406 ENSMUSG00000100573.1 ENSMUSG00000100573 ENSMUST00000190550 1700081H04Rik lincRNA Interval_84401 chr19 10633965 10635389 + 0 NA intron (ENSMUSG00000043789.8, intron 1 of 3) protein_coding-intron (ENSMUSG00000043789.8, intron 1 of 19) 464 ENSMUSG00000043789.8 ENSMUSG00000043789 ENSMUST00000235831 Vwce protein_coding Interval_57877 chr15 24385557 24385812 + 0 NA Intergenic Intergenic -10009 ENSMUSG00000115198.1 ENSMUSG00000115198 ENSMUST00000228438 Gm49729 lincRNA Interval_13880 chr10 24190554 24190868 + 0 NA TTS (ENSMUSG00000019998.6) protein_coding-TTS (ENSMUSG00000019998.6) -32834 ENSMUSG00000020000.7 ENSMUSG00000020000 ENSMUST00000154916 Moxd1 protein_coding Interval_84706 chr19 15758657 15759516 + 0 NA Intergenic Intergenic -43972 ENSMUSG00000117995.1 ENSMUSG00000117995 ENSMUST00000237461 Gm50348 lincRNA Interval_132071 chr5 142613403 142614489 + 0 NA Intergenic Intergenic -5146 ENSMUSG00000039533.8 ENSMUSG00000039533 ENSMUST00000196972 Mmd2 protein_coding Interval_161363 chr8 119957874 119958104 + 0 NA TTS (ENSMUSG00000031826.20) protein_coding-TTS (ENSMUSG00000031826.20) 11589 ENSMUSG00000031826.20 ENSMUSG00000031826 ENSMUST00000139648 Usp10 protein_coding Interval_121964 chr5 12669145 12669677 + 0 NA exon (ENSMUSG00000105237.1, exon 2 of 2) processed_pseudogene-exon (ENSMUSG00000105237.1, exon 2 of 2) 1317 ENSMUSG00000105237.1 ENSMUSG00000105237 ENSMUST00000197223 Gm42580 processed_pseudogene Interval_162111 chr8 125238051 125238303 + 0 NA intron (ENSMUSG00000043051.17, intron 12 of 13) protein_coding-intron (ENSMUSG00000043051.17, intron 11 of 12) -10854 ENSMUSG00000086694.1 ENSMUSG00000086694 ENSMUST00000156666 Gm16237 antisense Interval_139485 chr6 100482054 100484398 + 0 NA Intergenic Intergenic 11588 ENSMUSG00000087929.1 ENSMUSG00000087929 ENSMUST00000157304 Gm23234 snoRNA Interval_11593 chr1 183086558 183087471 + 0 NA exon (ENSMUSG00000030768.12, exon 10 of 10) protein_coding-exon (ENSMUSG00000030768.12, exon 10 of 10) 12408 ENSMUSG00000094807.2 ENSMUSG00000094807 ENSMUST00000178492 Gm24975 miRNA Interval_92030 chr2 52723373 52723619 + 0 NA intron (ENSMUSG00000055371.17, intron 1 of 7) protein_coding-intron (ENSMUSG00000055371.17, intron 1 of 13) 15959 ENSMUSG00000085815.1 ENSMUSG00000085815 ENSMUST00000144688 Gm13548 transcribed_processed_pseudogene Interval_147353 chr7 66060021 66061186 + 0 NA promoter-TSS (ENSMUSG00000030512.13) protein_coding-promoter-TSS (ENSMUSG00000030512.13) 0 ENSMUSG00000030512.13 ENSMUSG00000030512 ENSMUST00000147702 Snrpa1 protein_coding Interval_164835 chr9 42352081 42352450 + 0 NA intron (ENSMUSG00000037705.13, intron 12 of 23) protein_coding-intron (ENSMUSG00000037705.13, intron 12 of 23) -33597 ENSMUSG00000110937.1 ENSMUSG00000110937 ENSMUST00000215213 Gm47629 antisense Interval_107472 chr3 107943370 107944141 + 0 NA promoter-TSS (ENSMUSG00000068762.11) protein_coding-promoter-TSS (ENSMUSG00000068762.11) -372 ENSMUSG00000068762.11 ENSMUSG00000068762 ENSMUST00000106680 Gstm6 protein_coding Interval_54741 chr14 74567109 74567761 + 0 NA Intergenic Intergenic -19888 ENSMUSG00000115449.1 ENSMUSG00000115449 ENSMUST00000227527 Gm49175 lincRNA Interval_117648 chr4 125265702 125266227 + 0 NA Intergenic Intergenic 37367 ENSMUSG00000087010.1 ENSMUSG00000087010 ENSMUST00000130055 1700041M05Rik lincRNA Interval_31478 chr11 100912647 100912959 + 0 NA intron (ENSMUSG00000004040.16, intron 1 of 23) protein_coding-intron (ENSMUSG00000004040.16, intron 1 of 23) -13496 ENSMUSG00000004040.16 ENSMUSG00000004040 ENSMUST00000130686 Stat3 protein_coding Interval_160111 chr8 106510401 106511839 + 0 NA intron (ENSMUSG00000061048.8, intron 1 of 15) protein_coding-intron (ENSMUSG00000061048.8, intron 1 of 15) 229 ENSMUSG00000061048.8 ENSMUSG00000061048 ENSMUST00000080797 Cdh3 protein_coding Interval_87030 chr19 45693420 45694555 + 0 NA Intergenic Intergenic 48928 ENSMUSG00000025219.13 ENSMUSG00000025219 ENSMUST00000111925 Fgf8 protein_coding Interval_86376 chr19 39470708 39471092 + 0 NA Intergenic Intergenic -7825 ENSMUSG00000032808.2 ENSMUSG00000032808 ENSMUST00000035488 Cyp2c38 protein_coding Interval_3805 chr1 63185452 63185737 + 0 NA intron (ENSMUSG00000046856.13, intron 2 of 2) protein_coding-intron (ENSMUSG00000046856.13, intron 2 of 2) 6590 ENSMUSG00000064602.1 ENSMUSG00000064602 ENSMUST00000082668 Snora41 snoRNA Interval_163529 chr9 21876117 21877436 + 0 NA intron (ENSMUSG00000111766.1, intron 1 of 3) unitary_pseudogene-intron (ENSMUSG00000111766.1, intron 1 of 3) 4502 ENSMUSG00000111766.1 ENSMUSG00000111766 ENSMUST00000216356 Gm47873 unitary_pseudogene Interval_62006 chr15 85840769 85841849 + 0 NA intron (ENSMUSG00000035944.17, intron 5 of 13) protein_coding-intron (ENSMUSG00000035944.17, intron 3 of 4) 9003 ENSMUSG00000035944.17 ENSMUSG00000035944 ENSMUST00000133158 Ttc38 protein_coding Interval_148317 chr7 80471772 80472219 + 0 NA promoter-TSS (ENSMUSG00000030528.12) protein_coding-promoter-TSS (ENSMUSG00000030528.12) -11171 ENSMUSG00000030528.12 ENSMUSG00000030528 ENSMUST00000205584 Blm protein_coding Interval_43196 chr13 25064082 25064721 + 0 NA intron (ENSMUSG00000035910.15, intron 2 of 9) protein_coding-intron (ENSMUSG00000035910.15, intron 2 of 7) 29342 ENSMUSG00000114228.1 ENSMUSG00000114228 ENSMUST00000224353 Gm47605 processed_pseudogene Interval_57373 chr15 10212406 10213584 + 0 NA promoter-TSS (ENSMUSG00000005268.20) protein_coding-promoter-TSS (ENSMUSG00000005268.20) -10991 ENSMUSG00000005268.20 ENSMUSG00000005268 ENSMUST00000127467 Prlr protein_coding Interval_157410 chr8 70186360 70187084 + 0 NA TTS (ENSMUSG00000002346.16) protein_coding-TTS (ENSMUSG00000002346.16) 14314 ENSMUSG00000002342.17 ENSMUSG00000002342 ENSMUST00000143543 Tmem161a protein_coding Interval_41425 chr12 113716525 113717133 + 0 NA exon (ENSMUSG00000096670.1, exon 2 of 2) IG_V_gene-exon (ENSMUSG00000096670.1, exon 2 of 2) 274 ENSMUSG00000096670.1 ENSMUSG00000096670 ENSMUST00000179657 Ighv2-6 IG_V_gene Interval_165028 chr9 44022952 44023332 + 0 NA intron (ENSMUSG00000111229.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000111229.1, intron 1 of 2) 17917 ENSMUSG00000111229.1 ENSMUSG00000111229 ENSMUST00000215913 Gm39323 lincRNA Interval_48406 chr13 98835216 98835404 + 0 NA Intergenic Intergenic 18558 ENSMUSG00000114719.1 ENSMUSG00000114719 ENSMUST00000225468 Gm18134 processed_pseudogene Interval_76440 chr17 80206176 80207759 + 0 NA promoter-TSS (ENSMUSG00000046196.4) protein_coding-promoter-TSS (ENSMUSG00000046196.4) 336 ENSMUSG00000024097.11 ENSMUSG00000024097 ENSMUST00000234577 Srsf7 protein_coding Interval_83373 chr18 84675140 84677522 + 0 NA intron (ENSMUSG00000024644.17, intron 3 of 9) protein_coding-intron (ENSMUSG00000024644.17, intron 5 of 11) 8053 ENSMUSG00000024644.17 ENSMUSG00000024644 ENSMUST00000235149 Cndp2 protein_coding Interval_91625 chr2 44926475 44927786 + 0 NA promoter-TSS (ENSMUSG00000036890.13) protein_coding-promoter-TSS (ENSMUSG00000036890.13) -64855 ENSMUSG00000036890.13 ENSMUSG00000036890 ENSMUST00000133442 Gtdc1 protein_coding Interval_39142 chr12 85399767 85400026 + 0 NA Intergenic Intergenic -25206 ENSMUSG00000021248.9 ENSMUSG00000021248 ENSMUST00000223375 Tmed10 protein_coding Interval_8712 chr1 149755912 149756517 + 0 NA Intergenic Intergenic -21356 ENSMUSG00000084532.1 ENSMUSG00000084532 ENSMUST00000122583 n-R5s218 rRNA Interval_138930 chr6 93611747 93612594 + 0 NA Intergenic Intergenic 38055 ENSMUSG00000107739.1 ENSMUSG00000107739 ENSMUST00000203479 Gm7812 processed_pseudogene Interval_115198 chr4 94320925 94321548 + 0 NA intron (ENSMUSG00000085931.1, intron 1 of 5) lincRNA-intron (ENSMUSG00000085931.1, intron 1 of 5) -74422 ENSMUSG00000081508.1 ENSMUSG00000081508 ENSMUST00000120387 Gm12654 processed_pseudogene Interval_107014 chr3 102974910 102975443 + 0 NA Intergenic Intergenic -16793 ENSMUSG00000048938.12 ENSMUSG00000048938 ENSMUST00000196135 Nr1h5 protein_coding Interval_89430 chr2 20640216 20640605 + 0 NA intron (ENSMUSG00000036617.17, intron 1 of 2) protein_coding-intron (ENSMUSG00000036617.17, intron 3 of 18) 72824 ENSMUSG00000086418.1 ENSMUSG00000086418 ENSMUST00000137186 Gm13362 antisense Interval_104288 chr3 62880534 62880912 + 0 NA Intergenic Intergenic 43510 ENSMUSG00000063001.10 ENSMUSG00000063001 ENSMUST00000077976 Gm9701 processed_pseudogene Interval_94534 chr2 91987498 91988033 + 0 NA intron (ENSMUSG00000027230.9, intron 8 of 11) protein_coding-intron (ENSMUSG00000027230.9, intron 8 of 11) -22165 ENSMUSG00000040479.12 ENSMUSG00000040479 ENSMUST00000126473 Dgkz protein_coding Interval_64107 chr16 8411903 8412901 + 0 NA intron (ENSMUSG00000022715.3, intron 2 of 3) protein_coding-intron (ENSMUSG00000022715.3, intron 2 of 3) 9588 ENSMUSG00000077152.1 ENSMUSG00000077152 ENSMUST00000103964 Gm24579 snoRNA Interval_172401 chrX 17746365 17746770 + 0 NA Intergenic Intergenic -70283 ENSMUSG00000081614.1 ENSMUSG00000081614 ENSMUST00000120949 Gm9436 processed_pseudogene Interval_125348 chr5 66350964 66351258 + 0 NA intron (ENSMUSG00000029207.16, intron 11 of 17) protein_coding-intron (ENSMUSG00000029207.16, intron 12 of 17) -3886 ENSMUSG00000107155.1 ENSMUSG00000107155 ENSMUST00000201645 Gm43793 TEC Interval_166940 chr9 64042350 64043545 + 0 NA Intergenic Intergenic -1482 ENSMUSG00000093616.1 ENSMUSG00000093616 ENSMUST00000176450 1700055C04Rik processed_transcript Interval_44206 chr13 42095746 42096429 + 0 NA intron (ENSMUSG00000021366.8, intron 2 of 3) protein_coding-intron (ENSMUSG00000021366.8, intron 2 of 8) 46753 ENSMUSG00000100071.1 ENSMUSG00000100071 ENSMUST00000186134 Gm28707 lincRNA Interval_63361 chr15 100540090 100541675 + 0 NA intron (ENSMUSG00000009733.9, intron 1 of 2) protein_coding-intron (ENSMUSG00000009733.9, intron 2 of 15) -28638 ENSMUSG00000009733.9 ENSMUSG00000009733 ENSMUST00000231138 Tfcp2 protein_coding Interval_147554 chr7 68249614 68250094 + 0 NA intron (ENSMUSG00000030553.3, intron 1 of 3) protein_coding-intron (ENSMUSG00000030553.3, intron 1 of 3) 14379 ENSMUSG00000030553.3 ENSMUSG00000030553 ENSMUST00000207874 Pgpep1l protein_coding Interval_93279 chr2 71652225 71652974 + 0 NA Intergenic Intergenic -66818 ENSMUSG00000064263.6 ENSMUSG00000064263 ENSMUST00000079720 Platr26 lincRNA Interval_114959 chr4 87698721 87699157 + 0 NA Intergenic Intergenic 107384 ENSMUSG00000028496.17 ENSMUSG00000028496 ENSMUST00000142454 Mllt3 protein_coding Interval_124229 chr5 41763027 41764724 + 0 NA exon (ENSMUSG00000049691.8, exon 1 of 2) protein_coding-exon (ENSMUSG00000049691.8, exon 1 of 2) 626 ENSMUSG00000049691.8 ENSMUSG00000049691 ENSMUST00000060820 Nkx3-2 protein_coding Interval_47362 chr13 81937168 81937566 + 0 NA Intergenic Intergenic -7680 ENSMUSG00000114634.1 ENSMUSG00000114634 ENSMUST00000224647 F830210D05Rik TEC Interval_132653 chr5 146971916 146974218 + 0 NA Intergenic Intergenic -9267 ENSMUSG00000016510.11 ENSMUSG00000016510 ENSMUST00000140526 Mtif3 protein_coding Interval_127324 chr5 102898882 102899104 + 0 NA Intergenic Intergenic 53079 ENSMUSG00000105253.1 ENSMUSG00000105253 ENSMUST00000196071 Gm42522 processed_pseudogene Interval_29969 chr11 88442153 88442626 + 0 NA intron (ENSMUSG00000069769.13, intron 2 of 5) protein_coding-intron (ENSMUSG00000069769.13, intron 7 of 13) -8875 ENSMUSG00000084411.2 ENSMUSG00000084411 ENSMUST00000120278 Gm11510 processed_pseudogene Interval_135883 chr6 48395087 48396221 + 0 NA promoter-TSS (ENSMUSG00000042810.14) protein_coding-promoter-TSS (ENSMUSG00000042810.14) -246 ENSMUSG00000107875.1 ENSMUSG00000107875 ENSMUST00000181943 Gm44696 lincRNA Interval_109458 chr3 142647992 142648231 + 0 NA Intergenic Intergenic -10837 ENSMUSG00000105317.2 ENSMUSG00000105317 ENSMUST00000198870 Gbp2-ps unprocessed_pseudogene Interval_92947 chr2 68894581 68895476 + 0 NA TTS (ENSMUSG00000103233.1) TEC-TTS (ENSMUSG00000103233.1) 3662 ENSMUSG00000103233.1 ENSMUSG00000103233 ENSMUST00000192720 Gm37159 TEC Interval_9764 chr1 161932425 161933006 + 0 NA Intergenic Intergenic -36485 ENSMUSG00000103393.1 ENSMUSG00000103393 ENSMUST00000161826 Gm38304 antisense Interval_105948 chr3 90247681 90248923 + 0 NA intron (ENSMUSG00000052310.9, intron 1 of 3) protein_coding-intron (ENSMUSG00000052310.9, intron 1 of 3) 130 ENSMUSG00000052310.9 ENSMUSG00000052310 ENSMUST00000015467 Slc39a1 protein_coding Interval_72672 chr17 31467020 31468889 + 0 NA intron (ENSMUSG00000041119.12, intron 2 of 5) protein_coding-intron (ENSMUSG00000041119.12, intron 14 of 18) -6119 ENSMUSG00000118081.1 ENSMUSG00000118081 ENSMUST00000236844 Gm50138 antisense Interval_163531 chr9 21933194 21933398 + 0 NA intron (ENSMUSG00000006241.16, intron 7 of 10) protein_coding-intron (ENSMUSG00000006241.16, intron 7 of 12) -4978 ENSMUSG00000040563.13 ENSMUSG00000040563 ENSMUST00000188468 Plppr2 protein_coding Interval_83379 chr18 84719318 84720947 + 0 NA promoter-TSS (ENSMUSG00000047992.11) protein_coding-promoter-TSS (ENSMUSG00000047992.11) 643 ENSMUSG00000089760.1 ENSMUSG00000089760 ENSMUST00000162318 D030046N08Rik bidirectional_promoter_lncRNA Interval_19765 chr10 108567778 108569179 + 0 NA intron (ENSMUSG00000035864.14, intron 10 of 11) protein_coding-intron (ENSMUSG00000035864.14, intron 9 of 10) 85828 ENSMUSG00000112065.1 ENSMUSG00000112065 ENSMUST00000217917 Gm47466 processed_pseudogene Interval_81179 chr18 55924231 55925302 + 0 NA Intergenic Intergenic -13387 ENSMUSG00000118141.1 ENSMUSG00000118141 ENSMUST00000235251 Gm4230 lincRNA Interval_15492 chr10 49025486 49026158 + 0 NA Intergenic Intergenic 68907 ENSMUSG00000111374.1 ENSMUSG00000111374 ENSMUST00000214664 Gm50490 processed_pseudogene Interval_24276 chr11 32020020 32020859 + 0 NA intron (ENSMUSG00000020297.10, intron 3 of 4) protein_coding-intron (ENSMUSG00000020297.10, intron 3 of 4) 19976 ENSMUSG00000020297.10 ENSMUSG00000020297 ENSMUST00000093219 Nsg2 protein_coding Interval_147758 chr7 73403615 73403872 + 0 NA promoter-TSS (ENSMUSG00000108678.1) TEC-promoter-TSS (ENSMUSG00000108678.1) -607 ENSMUSG00000108678.1 ENSMUSG00000108678 ENSMUST00000206096 Gm44758 TEC Interval_158595 chr8 84678092 84679044 + 0 NA intron (ENSMUSG00000001910.5, intron 1 of 5) protein_coding-intron (ENSMUSG00000001910.5, intron 1 of 5) -7771 ENSMUSG00000001909.16 ENSMUSG00000001909 ENSMUST00000177260 Trmt1 protein_coding Interval_159077 chr8 89701707 89701972 + 0 NA Intergenic Intergenic -34535 ENSMUSG00000088883.1 ENSMUSG00000088883 ENSMUST00000158258 Gm24212 snoRNA Interval_70332 chr17 8546136 8546903 + 0 NA intron (ENSMUSG00000023868.17, intron 1 of 3) protein_coding-intron (ENSMUSG00000023868.17, intron 1 of 21) 20431 ENSMUSG00000099104.1 ENSMUSG00000099104 ENSMUST00000184183 Gm17087 protein_coding Interval_10789 chr1 174893279 174893573 + 0 NA intron (ENSMUSG00000050069.3, intron 1 of 1) protein_coding-intron (ENSMUSG00000050069.3, intron 1 of 1) 28393 ENSMUSG00000050069.3 ENSMUSG00000050069 ENSMUST00000055294 Grem2 protein_coding Interval_156118 chr8 44948649 44948881 + 0 NA intron (ENSMUSG00000070047.14, intron 1 of 26) protein_coding-intron (ENSMUSG00000070047.14, intron 1 of 26) -1449 ENSMUSG00000070047.14 ENSMUSG00000070047 ENSMUST00000189367 Fat1 protein_coding Interval_166563 chr9 60910662 60911102 + 0 NA Intergenic Intergenic -8341 ENSMUSG00000111444.1 ENSMUSG00000111444 ENSMUST00000216374 Gm47923 lincRNA Interval_125156 chr5 64976247 64976765 + 0 NA intron (ENSMUSG00000029185.14, intron 1 of 3) protein_coding-intron (ENSMUSG00000029185.14, intron 1 of 13) 3856 ENSMUSG00000106186.1 ENSMUSG00000106186 ENSMUST00000197119 Gm43627 TEC Interval_159253 chr8 92364315 92365191 + 0 NA intron (ENSMUSG00000031737.11, intron 4 of 4) protein_coding-intron (ENSMUSG00000031737.11, intron 4 of 4) 7128 ENSMUSG00000031737.11 ENSMUSG00000031737 ENSMUST00000034184 Irx5 protein_coding Interval_53110 chr14 54509958 54510208 + 0 NA TTS (ENSMUSG00000023110.12) protein_coding-TTS (ENSMUSG00000023110.12) 7310 ENSMUSG00000023110.12 ENSMUSG00000023110 ENSMUST00000132801 Prmt5 protein_coding Interval_48141 chr13 96639937 96640210 + 0 NA TTS (ENSMUSG00000021669.15) protein_coding-TTS (ENSMUSG00000021669.15) 11018 ENSMUSG00000021669.15 ENSMUSG00000021669 ENSMUST00000221394 Col4a3bp protein_coding Interval_126287 chr5 86090900 86092243 + 0 NA intron (ENSMUSG00000029254.16, intron 6 of 8) protein_coding-intron (ENSMUSG00000029254.16, intron 5 of 7) 11805 ENSMUSG00000064859.1 ENSMUSG00000064859 ENSMUST00000082925 Gm24524 snRNA Interval_44278 chr13 43295301 43295847 + 0 NA intron (ENSMUSG00000051335.6, intron 1 of 1) protein_coding-intron (ENSMUSG00000051335.6, intron 1 of 1) 7831 ENSMUSG00000051335.6 ENSMUSG00000051335 ENSMUST00000222779 Gfod1 protein_coding Interval_51712 chr14 31582745 31583260 + 0 NA intron (ENSMUSG00000057606.14, intron 1 of 2) protein_coding-intron (ENSMUSG00000057606.14, intron 1 of 3) -24862 ENSMUSG00000057606.14 ENSMUSG00000057606 ENSMUST00000129238 Colq protein_coding Interval_163547 chr9 22018945 22019178 + 0 NA intron (ENSMUSG00000003410.8, intron 6 of 6) protein_coding-intron (ENSMUSG00000003410.8, intron 6 of 6) 16255 ENSMUSG00000003402.14 ENSMUSG00000003402 ENSMUST00000214565 Prkcsh protein_coding Interval_48394 chr13 98726582 98727070 + 0 NA intron (ENSMUSG00000041685.16, intron 8 of 9) protein_coding-intron (ENSMUSG00000041685.16, intron 24 of 25) -6160 ENSMUSG00000114612.1 ENSMUSG00000114612 ENSMUST00000225686 Gm47550 TEC Interval_28051 chr11 72488615 72490457 + 0 NA exon (ENSMUSG00000040447.15, exon 1 of 13) protein_coding-exon (ENSMUSG00000040447.15, exon 1 of 13) 12907 ENSMUSG00000020798.14 ENSMUSG00000020798 ENSMUST00000021154 Spns3 protein_coding Interval_157958 chr8 77313932 77314748 + 0 NA intron (ENSMUSG00000037148.8, intron 18 of 21) protein_coding-intron (ENSMUSG00000037148.8, intron 18 of 22) 8807 ENSMUSG00000110410.1 ENSMUSG00000110410 ENSMUST00000209302 4933421D24Rik antisense Interval_28491 chr11 76325207 76326987 + 0 NA intron (ENSMUSG00000020844.6, intron 1 of 7) protein_coding-intron (ENSMUSG00000020844.6, intron 1 of 7) 72971 ENSMUSG00000020844.6 ENSMUSG00000020844 ENSMUST00000131472 Nxn protein_coding Interval_130640 chr5 129385888 129386186 + 0 NA Intergenic Intergenic 21917 ENSMUSG00000104681.1 ENSMUSG00000104681 ENSMUST00000199076 Gm43001 lincRNA Interval_65785 chr16 28842217 28842776 + 0 NA intron (ENSMUSG00000051065.9, intron 1 of 1) protein_coding-intron (ENSMUSG00000051065.9, intron 1 of 1) -6129 ENSMUSG00000051065.9 ENSMUSG00000051065 ENSMUST00000232571 Mb21d2 protein_coding Interval_109215 chr3 137954383 137955911 + 0 NA promoter-TSS (ENSMUSG00000028159.14) protein_coding-promoter-TSS (ENSMUSG00000028159.14) -434 ENSMUSG00000028159.14 ENSMUSG00000028159 ENSMUST00000199541 Dapp1 protein_coding Interval_134866 chr6 32813924 32814289 + 0 NA intron (ENSMUSG00000053768.13, intron 3 of 4) protein_coding-intron (ENSMUSG00000053768.13, intron 6 of 7) -61818 ENSMUSG00000106873.1 ENSMUSG00000106873 ENSMUST00000202626 BC049739 lincRNA Interval_25510 chr11 49381858 49382351 + 0 NA Intergenic Intergenic -22516 ENSMUSG00000084278.1 ENSMUSG00000084278 ENSMUST00000119779 Gm12189 processed_pseudogene Interval_142543 chr6 143170582 143170891 + 0 NA intron (ENSMUSG00000030275.6, intron 1 of 6) protein_coding-intron (ENSMUSG00000030275.6, intron 1 of 7) 3482 ENSMUSG00000030275.6 ENSMUSG00000030275 ENSMUST00000205256 Etnk1 protein_coding Interval_79545 chr18 33443236 33443729 + 0 NA intron (ENSMUSG00000042834.15, intron 3 of 4) protein_coding-intron (ENSMUSG00000042834.15, intron 2 of 3) 20372 ENSMUSG00000042834.15 ENSMUSG00000042834 ENSMUST00000051087 Nrep protein_coding Interval_22319 chr11 8734512 8736395 + 0 NA Intergenic Intergenic -70772 ENSMUSG00000020422.14 ENSMUSG00000020422 ENSMUST00000134823 Tns3 protein_coding Interval_168559 chr9 83563954 83564434 + 0 NA intron (ENSMUSG00000032261.16, intron 1 of 3) protein_coding-intron (ENSMUSG00000032261.16, intron 1 of 3) 9095 ENSMUSG00000110950.1 ENSMUSG00000110950 ENSMUST00000213703 Gm39384 lincRNA Interval_135901 chr6 48554451 48555702 + 0 NA intron (ENSMUSG00000073096.11, intron 1 of 1) protein_coding-intron (ENSMUSG00000073096.11, intron 1 of 1) 277 ENSMUSG00000073096.11 ENSMUSG00000073096 ENSMUST00000203627 Lrrc61 protein_coding Interval_158003 chr8 77852013 77852202 + 0 NA Intergenic Intergenic 44572 ENSMUSG00000087761.1 ENSMUSG00000087761 ENSMUST00000157136 Gm23981 snRNA Interval_54965 chr14 76538337 76538538 + 0 NA intron (ENSMUSG00000052584.10, intron 1 of 1) protein_coding-intron (ENSMUSG00000052584.10, intron 2 of 2) 11845 ENSMUSG00000115092.1 ENSMUSG00000115092 ENSMUST00000227784 E130202H07Rik lincRNA Interval_130924 chr5 134073696 134074095 + 0 NA Intergenic Intergenic 17556 ENSMUSG00000106800.1 ENSMUSG00000106800 ENSMUST00000202497 1700030N18Rik TEC Interval_33010 chr11 113658449 113658798 + 0 NA promoter-TSS (ENSMUSG00000018661.17) protein_coding-promoter-TSS (ENSMUSG00000018661.17) 45 ENSMUSG00000018661.17 ENSMUSG00000018661 ENSMUST00000137878 Cog1 protein_coding Interval_62917 chr15 97875849 97877097 + 0 NA TTS (ENSMUSG00000022479.15) protein_coding-TTS (ENSMUSG00000022479.15) 34157 ENSMUSG00000022479.15 ENSMUSG00000022479 ENSMUST00000173611 Vdr protein_coding Interval_155027 chr8 25805122 25807307 + 0 NA promoter-TSS (ENSMUSG00000031574.8) protein_coding-promoter-TSS (ENSMUSG00000031574.8) -341 ENSMUSG00000031574.8 ENSMUSG00000031574 ENSMUST00000033979 Star protein_coding Interval_22343 chr11 8968914 8969135 + 0 NA intron (ENSMUSG00000046634.12, intron 1 of 49) protein_coding-intron (ENSMUSG00000046634.12, intron 1 of 49) -18485 ENSMUSG00000046634.12 ENSMUSG00000046634 ENSMUST00000155886 Pkd1l1 protein_coding Interval_134405 chr6 28397336 28398921 + 0 NA promoter-TSS (ENSMUSG00000039841.14) protein_coding-promoter-TSS (ENSMUSG00000039841.14) -25581 ENSMUSG00000020440.13 ENSMUSG00000020440 ENSMUST00000202028 Arf5 protein_coding Interval_170536 chr9 108573188 108574347 + 0 NA TTS (ENSMUSG00000019039.14) protein_coding-TTS (ENSMUSG00000019039.14) 3857 ENSMUSG00000019039.14 ENSMUSG00000019039 ENSMUST00000192518 Dalrd3 protein_coding Interval_34987 chr12 16415183 16415906 + 0 NA Intergenic Intergenic -183317 ENSMUSG00000113892.1 ENSMUSG00000113892 ENSMUST00000220475 Gm48605 lincRNA Interval_41612 chr12 116969617 116969842 + 0 NA intron (ENSMUSG00000056553.14, intron 11 of 22) protein_coding-intron (ENSMUSG00000056553.14, intron 11 of 22) -116627 ENSMUSG00000113795.1 ENSMUSG00000113795 ENSMUST00000220994 Gm48119 processed_pseudogene Interval_2326 chr1 38074072 38074625 + 0 NA TTS (ENSMUSG00000026082.11) protein_coding-TTS (ENSMUSG00000026082.11) 2957 ENSMUSG00000103804.1 ENSMUSG00000103804 ENSMUST00000195028 Gm37062 sense_intronic Interval_2350 chr1 38299193 38299442 + 0 NA intron (ENSMUSG00000037138.18, intron 9 of 22) protein_coding-intron (ENSMUSG00000037138.18, intron 9 of 22) -8585 ENSMUSG00000085280.1 ENSMUSG00000085280 ENSMUST00000129696 Gm16151 antisense Interval_29807 chr11 86973696 86975265 + 0 NA intron (ENSMUSG00000018427.8, intron 1 of 4) protein_coding-intron (ENSMUSG00000018427.8, intron 1 of 4) -2456 ENSMUSG00000018427.8 ENSMUSG00000018427 ENSMUST00000238921 Ypel2 protein_coding Interval_42950 chr13 21861525 21862217 + 0 NA Intergenic Intergenic 14358 ENSMUSG00000080770.1 ENSMUSG00000080770 ENSMUST00000121002 Gm11278 processed_pseudogene Interval_95427 chr2 109210252 109211662 + 0 NA intron (ENSMUSG00000057234.9, intron 2 of 4) protein_coding-intron (ENSMUSG00000057234.9, intron 2 of 5) -62259 ENSMUSG00000076987.1 ENSMUSG00000076987 ENSMUST00000103799 Gm24115 miRNA Interval_30488 chr11 94697010 94698937 + 0 NA intron (ENSMUSG00000056008.1, intron 1 of 1) protein_coding-intron (ENSMUSG00000056008.1, intron 1 of 1) 6526 ENSMUSG00000056008.1 ENSMUSG00000056008 ENSMUST00000069852 Gm11541 protein_coding Interval_7055 chr1 124174857 124175285 + 0 NA intron (ENSMUSG00000036815.17, intron 1 of 25) protein_coding-intron (ENSMUSG00000036815.17, intron 1 of 25) 204171 ENSMUSG00000103914.1 ENSMUSG00000103914 ENSMUST00000195141 Gm38073 TEC Interval_142230 chr6 139391395 139391600 + 0 NA Intergenic Intergenic -68921 ENSMUSG00000108128.1 ENSMUSG00000108128 ENSMUST00000204038 4922502N22Rik lincRNA Interval_172394 chrX 17521015 17521744 + 0 NA Intergenic Intergenic 50262 ENSMUSG00000025040.13 ENSMUSG00000025040 ENSMUST00000142638 Fundc1 protein_coding Interval_159701 chr8 98382049 98382346 + 0 NA Intergenic Intergenic -157534 ENSMUSG00000110194.1 ENSMUSG00000110194 ENSMUST00000210793 Gm7192 processed_pseudogene Interval_38814 chr12 82568391 82569321 + 0 NA Intergenic Intergenic 16604 ENSMUSG00000084705.1 ENSMUSG00000084705 ENSMUST00000122756 n-R5s63 rRNA Interval_27469 chr11 68062574 68062890 + 0 NA intron (ENSMUSG00000020903.13, intron 5 of 6) protein_coding-intron (ENSMUSG00000020903.13, intron 6 of 7) 9397 ENSMUSG00000089599.1 ENSMUSG00000089599 ENSMUST00000158974 Gm26157 rRNA Interval_45016 chr13 51468864 51469066 + 0 NA intron (ENSMUSG00000021448.8, intron 5 of 11) protein_coding-intron (ENSMUSG00000021448.8, intron 5 of 11) -50279 ENSMUSG00000112959.1 ENSMUSG00000112959 ENSMUST00000220470 Gm32834 lincRNA Interval_98092 chr2 147905146 147906796 + 0 NA Intergenic Intergenic -31093 ENSMUSG00000065791.1 ENSMUSG00000065791 ENSMUST00000083857 Gm25516 snRNA Interval_115462 chr4 99161151 99162336 + 0 NA promoter-TSS (ENSMUSG00000086498.1) lincRNA-promoter-TSS (ENSMUSG00000086498.1) -101 ENSMUSG00000086498.1 ENSMUSG00000086498 ENSMUST00000132337 Gm12681 lincRNA Interval_104909 chr3 78948388 78949619 + 0 NA Intergenic Intergenic 17796 ENSMUSG00000037096.6 ENSMUSG00000037096 ENSMUST00000036976 Gm9762 processed_pseudogene Interval_34798 chr12 11312384 11312557 + 0 NA intron (ENSMUSG00000020608.7, intron 5 of 7) protein_coding-intron (ENSMUSG00000020608.7, intron 24 of 26) 12583 ENSMUSG00000098879.1 ENSMUSG00000098879 ENSMUST00000184262 Mir7675 miRNA Interval_150427 chr7 110444590 110444935 + 0 NA intron (ENSMUSG00000038371.15, intron 4 of 5) protein_coding-intron (ENSMUSG00000038371.15, intron 9 of 40) 4958 ENSMUSG00000038371.15 ENSMUSG00000038371 ENSMUST00000167652 Sbf2 protein_coding Interval_92928 chr2 68744399 68745820 + 0 NA intron (ENSMUSG00000079324.11, intron 27 of 28) protein_coding-intron (ENSMUSG00000079324.11, intron 26 of 27) 28818 ENSMUSG00000079324.11 ENSMUSG00000079324 ENSMUST00000135023 4932414N04Rik protein_coding Interval_132679 chr5 147114566 147114847 + 0 NA Intergenic Intergenic -13653 ENSMUSG00000083988.1 ENSMUSG00000083988 ENSMUST00000120308 Rps10-ps4 processed_pseudogene Interval_101920 chr3 11378753 11378967 + 0 NA Intergenic Intergenic 224523 ENSMUSG00000095289.1 ENSMUSG00000095289 ENSMUST00000175281 Gm22547 miRNA Interval_167693 chr9 72066268 72066547 + 0 NA intron (ENSMUSG00000032228.16, intron 3 of 19) protein_coding-intron (ENSMUSG00000032228.16, intron 3 of 19) 5470 ENSMUSG00000098915.1 ENSMUSG00000098915 ENSMUST00000184247 Rpl15-ps2 processed_pseudogene Interval_60164 chr15 66867491 66868023 + 0 NA Intergenic Intergenic -41507 ENSMUSG00000005124.10 ENSMUSG00000005124 ENSMUST00000133863 Ccn4 protein_coding Interval_93560 chr2 74168172 74169581 + 0 NA Intergenic Intergenic 33119 ENSMUSG00000084791.1 ENSMUSG00000084791 ENSMUST00000132332 Gm13667 lincRNA Interval_160652 chr8 111337459 111338513 + 0 NA promoter-TSS (ENSMUSG00000012519.14) protein_coding-promoter-TSS (ENSMUSG00000012519.14) -193 ENSMUSG00000012519.14 ENSMUSG00000012519 ENSMUST00000145862 Mlkl protein_coding Interval_158919 chr8 87949945 87950175 + 0 NA intron (ENSMUSG00000045333.15, intron 1 of 7) protein_coding-intron (ENSMUSG00000045333.15, intron 1 of 7) 3802 ENSMUSG00000045333.15 ENSMUSG00000045333 ENSMUST00000173092 Zfp423 protein_coding Interval_174255 chrX 142157658 142158612 + 0 NA intron (ENSMUSG00000042282.4, intron 5 of 19) protein_coding-intron (ENSMUSG00000042282.4, intron 5 of 19) 38796 ENSMUSG00000042282.4 ENSMUSG00000042282 ENSMUST00000042530 Gucy2f protein_coding Interval_129056 chr5 117114739 117116523 + 0 NA intron (ENSMUSG00000086047.1, intron 1 of 2) protein_coding-intron (ENSMUSG00000066900.11, intron 1 of 11) 413 ENSMUSG00000086047.1 ENSMUSG00000086047 ENSMUST00000149413 9530046B11Rik antisense Interval_105406 chr3 86028910 86029934 + 0 NA intron (ENSMUSG00000028082.14, intron 1 of 20) protein_coding-intron (ENSMUSG00000028082.14, intron 1 of 20) -26931 ENSMUSG00000049013.3 ENSMUSG00000049013 ENSMUST00000061343 Prss48 protein_coding Interval_68787 chr16 86419435 86420582 + 0 NA Intergenic Intergenic 183837 ENSMUSG00000116799.1 ENSMUSG00000116799 ENSMUST00000231827 Gm32357 lincRNA Interval_156800 chr8 60504958 60506560 + 0 NA promoter-TSS (ENSMUSG00000057228.6) protein_coding-promoter-TSS (ENSMUSG00000057228.6) -356 ENSMUSG00000057228.6 ENSMUSG00000057228 ENSMUST00000209338 Aadat protein_coding Interval_80362 chr18 40117661 40118185 + 0 NA Intergenic Intergenic -8190 ENSMUSG00000118042.1 ENSMUSG00000118042 ENSMUST00000235427 Gm50395 lincRNA Interval_139773 chr6 108569428 108571801 + 0 NA Intergenic Intergenic -5026 ENSMUSG00000043024.6 ENSMUSG00000043024 ENSMUST00000062429 Gm16433 processed_pseudogene Interval_146962 chr7 56327490 56328008 + 0 NA intron (ENSMUSG00000030450.11, intron 14 of 22) protein_coding-intron (ENSMUSG00000030450.11, intron 15 of 23) -84599 ENSMUSG00000108773.1 ENSMUSG00000108773 ENSMUST00000206278 Gm44506 antisense Interval_135364 chr6 38635633 38637626 + 0 NA exon (ENSMUSG00000071537.6, exon 1 of 5) protein_coding-exon (ENSMUSG00000071537.6, exon 1 of 5) 604 ENSMUSG00000071537.6 ENSMUSG00000071537 ENSMUST00000201345 Klrg2 protein_coding Interval_121509 chr5 3008220 3009790 + 0 NA Intergenic Intergenic -7953 ENSMUSG00000098947.2 ENSMUSG00000098947 ENSMUST00000183378 V1rg10 polymorphic_pseudogene Interval_165082 chr9 44454045 44455115 + 0 NA intron (ENSMUSG00000041523.3, intron 1 of 4) protein_coding-intron (ENSMUSG00000041523.3, intron 1 of 4) 396 ENSMUSG00000041523.3 ENSMUSG00000041523 ENSMUST00000047740 Upk2 protein_coding Interval_62614 chr15 95621841 95622272 + 0 NA Intergenic Intergenic 10772 ENSMUSG00000045608.7 ENSMUSG00000045608 ENSMUST00000229611 Dbx2 protein_coding Interval_80800 chr18 47321005 47321186 + 0 NA intron (ENSMUSG00000019647.16, intron 1 of 16) protein_coding-intron (ENSMUSG00000019647.16, intron 1 of 18) 12253 ENSMUSG00000019647.16 ENSMUSG00000019647 ENSMUST00000144223 Sema6a protein_coding Interval_147821 chr7 73811997 73812813 + 0 NA intron (ENSMUSG00000074067.9, intron 1 of 3) lincRNA-intron (ENSMUSG00000074067.9, intron 1 of 4) 4098 ENSMUSG00000074067.9 ENSMUSG00000074067 ENSMUST00000098372 Gm10619 lincRNA Interval_114962 chr4 87722736 87723002 + 0 NA Intergenic Intergenic 83454 ENSMUSG00000028496.17 ENSMUSG00000028496 ENSMUST00000142454 Mllt3 protein_coding Interval_81419 chr18 60651425 60652257 + 0 NA intron (ENSMUSG00000043079.17, intron 2 of 3) protein_coding-intron (ENSMUSG00000043079.17, intron 2 of 3) -27579 ENSMUSG00000043079.17 ENSMUSG00000043079 ENSMUST00000139236 Synpo protein_coding Interval_52139 chr14 37037960 37038250 + 0 NA TTS (ENSMUSG00000021804.6) protein_coding-TTS (ENSMUSG00000021804.6) 6603 ENSMUSG00000021804.6 ENSMUSG00000021804 ENSMUST00000225403 Rgr protein_coding Interval_168866 chr9 88225410 88225675 + 0 NA Intergenic Intergenic -34353 ENSMUSG00000100782.1 ENSMUSG00000100782 ENSMUST00000190118 Gm28231 lincRNA Interval_71688 chr17 25432628 25434618 + 0 NA promoter-TSS (ENSMUSG00000024112.16) protein_coding-promoter-TSS (ENSMUSG00000024112.16) -37974 ENSMUSG00000024175.2 ENSMUSG00000024175 ENSMUST00000234436 Tekt4 protein_coding Interval_6685 chr1 118741262 118741606 + 0 NA Intergenic Intergenic 59613 ENSMUSG00000088363.1 ENSMUSG00000088363 ENSMUST00000157738 Gm23497 snRNA Interval_62767 chr15 96736497 96736885 + 0 NA Intergenic Intergenic 30387 ENSMUSG00000095638.2 ENSMUSG00000095638 ENSMUST00000177677 Gm8888 processed_pseudogene Interval_92886 chr2 68143233 68143629 + 0 NA Intergenic Intergenic 61640 ENSMUSG00000081257.1 ENSMUSG00000081257 ENSMUST00000117875 Gm13607 processed_pseudogene Interval_103836 chr3 53512307 53512572 + 0 NA TTS (ENSMUSG00000087936.1) snoRNA-TTS (ENSMUSG00000087936.1) 437 ENSMUSG00000087936.1 ENSMUSG00000087936 ENSMUST00000157311 Gm23675 snoRNA Interval_56386 chr14 118318150 118319261 + 0 NA Intergenic Intergenic -4272 ENSMUSG00000115258.1 ENSMUSG00000115258 ENSMUST00000227592 Gm32093 lincRNA Interval_146310 chr7 45272891 45273678 + 0 NA TTS (ENSMUSG00000094152.5) protein_coding-TTS (ENSMUSG00000094152.5) -4229 ENSMUSG00000070568.12 ENSMUSG00000070568 ENSMUST00000210733 Slc6a21 protein_coding Interval_47679 chr13 91168778 91170353 + 0 NA intron (ENSMUSG00000021619.6, intron 2 of 6) protein_coding-intron (ENSMUSG00000021619.6, intron 2 of 7) -50887 ENSMUSG00000091419.2 ENSMUSG00000091419 ENSMUST00000164671 Gm17450 pseudogene Interval_76558 chr17 81068873 81069160 + 0 NA Intergenic Intergenic -3934 ENSMUSG00000024246.9 ENSMUSG00000024246 ENSMUST00000234801 Thumpd2 protein_coding Interval_94632 chr2 92851438 92851764 + 0 NA Intergenic Intergenic 21708 ENSMUSG00000082700.1 ENSMUSG00000082700 ENSMUST00000121350 Gm13792 processed_pseudogene Interval_6924 chr1 120758876 120760333 + 0 NA intron (ENSMUSG00000101386.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000101386.1, intron 1 of 1) 1161 ENSMUSG00000101386.1 ENSMUSG00000101386 ENSMUST00000188147 Gm29346 lincRNA Interval_33937 chr11 119534006 119534432 + 0 NA Intergenic Intergenic 13534 ENSMUSG00000025582.4 ENSMUSG00000025582 ENSMUST00000026670 Nptx1 protein_coding Interval_127028 chr5 99718293 99718564 + 0 NA intron (ENSMUSG00000089809.9, intron 1 of 1) protein_coding-intron (ENSMUSG00000089809.9, intron 1 of 1) 10384 ENSMUSG00000089809.9 ENSMUSG00000089809 ENSMUST00000161148 Rasgef1b protein_coding Interval_29615 chr11 85451954 85452764 + 0 NA intron (ENSMUSG00000059439.15, intron 8 of 26) protein_coding-intron (ENSMUSG00000059439.15, intron 8 of 24) -13800 ENSMUSG00000059439.15 ENSMUSG00000059439 ENSMUST00000140562 Bcas3 protein_coding Interval_108136 chr3 121798060 121798281 + 0 NA intron (ENSMUSG00000028127.10, intron 1 of 1) protein_coding-intron (ENSMUSG00000028127.10, intron 1 of 22) -9598 ENSMUSG00000105597.1 ENSMUSG00000105597 ENSMUST00000198169 4633401B06Rik TEC Interval_132625 chr5 146813425 146813691 + 0 NA Intergenic Intergenic 17640 ENSMUSG00000104845.1 ENSMUSG00000104845 ENSMUST00000197536 1700041I07Rik lincRNA Interval_52968 chr14 52372586 52372785 + 0 NA TTS (ENSMUSG00000103010.1) TEC-TTS (ENSMUSG00000103010.1) 2841 ENSMUSG00000103010.1 ENSMUSG00000103010 ENSMUST00000192537 Gm37504 TEC Interval_157657 chr8 72114848 72116313 + 0 NA exon (ENSMUSG00000046881.7, exon 2 of 2) protein_coding-exon (ENSMUSG00000046881.7, exon 2 of 2) 4346 ENSMUSG00000088460.1 ENSMUSG00000088460 ENSMUST00000157835 Gm24747 rRNA Interval_162597 chr9 5594339 5595167 + 0 NA Intergenic Intergenic -202026 ENSMUSG00000110927.1 ENSMUSG00000110927 ENSMUST00000213873 Gm48506 processed_pseudogene Interval_40909 chr12 109789873 109790856 + 0 NA Intergenic Intergenic -36639 ENSMUSG00000113711.1 ENSMUSG00000113711 ENSMUST00000221611 Gm9661 processed_pseudogene Interval_6814 chr1 119818487 119818966 + 0 NA TTS (ENSMUSG00000090277.1) processed_pseudogene-TTS (ENSMUSG00000090277.1) 963 ENSMUSG00000090277.1 ENSMUSG00000090277 ENSMUST00000163928 Gm8338 processed_pseudogene Interval_137523 chr6 72875533 72875740 + 0 NA intron (ENSMUSG00000055239.10, intron 1 of 3) protein_coding-intron (ENSMUSG00000055239.10, intron 1 of 6) 20283 ENSMUSG00000107610.1 ENSMUSG00000107610 ENSMUST00000205107 D530018E20Rik TEC Interval_74245 chr17 47687512 47689379 + 0 NA promoter-TSS (ENSMUSG00000033475.15) protein_coding-promoter-TSS (ENSMUSG00000033475.15) -59 ENSMUSG00000033475.15 ENSMUSG00000033475 ENSMUST00000143156 Tomm6 protein_coding Interval_149762 chr7 101330872 101331215 + 0 NA intron (ENSMUSG00000030688.15, intron 2 of 6) protein_coding-intron (ENSMUSG00000030688.15, intron 2 of 6) -4812 ENSMUSG00000092364.2 ENSMUSG00000092364 ENSMUST00000172644 Gm20476 antisense Interval_89792 chr2 25460484 25461495 + 0 NA promoter-TSS (ENSMUSG00000047617.11) protein_coding-promoter-TSS (ENSMUSG00000047617.11) 42 ENSMUSG00000047617.11 ENSMUSG00000047617 ENSMUST00000123986 Paxx protein_coding Interval_174023 chrX 130256591 130257587 + 0 NA intron (ENSMUSG00000034480.18, intron 23 of 26) protein_coding-intron (ENSMUSG00000034480.18, intron 23 of 26) 145130 ENSMUSG00000084047.1 ENSMUSG00000084047 ENSMUST00000120343 Gm14984 processed_pseudogene Interval_161578 chr8 121318820 121318992 + 0 NA intron (ENSMUSG00000097384.1, intron 1 of 1) protein_coding-intron (ENSMUSG00000092329.1, intron 1 of 15) 37930 ENSMUSG00000097384.1 ENSMUSG00000097384 ENSMUST00000181200 Gm26815 lincRNA Interval_104766 chr3 72157094 72157513 + 0 NA Intergenic Intergenic -23434 ENSMUSG00000103859.1 ENSMUSG00000103859 ENSMUST00000192368 Gm37603 processed_pseudogene Interval_33509 chr11 116958582 116959334 + 0 NA intron (ENSMUSG00000043857.16, intron 2 of 5) protein_coding-intron (ENSMUSG00000043857.16, intron 8 of 17) 11623 ENSMUSG00000043857.16 ENSMUSG00000043857 ENSMUST00000126757 Mgat5b protein_coding Interval_130189 chr5 124827423 124827674 + 0 NA intron (ENSMUSG00000038011.15, intron 17 of 26) protein_coding-intron (ENSMUSG00000038011.15, intron 69 of 78) -9236 ENSMUSG00000105583.1 ENSMUSG00000105583 ENSMUST00000197269 Gm43777 antisense Interval_58360 chr15 33534971 33535931 + 0 NA intron (ENSMUSG00000039007.10, intron 8 of 8) protein_coding-intron (ENSMUSG00000039007.10, intron 7 of 7) 54285 ENSMUSG00000088062.1 ENSMUSG00000088062 ENSMUST00000157437 Gm24476 rRNA Interval_39158 chr12 85508430 85508658 + 0 NA Intergenic Intergenic -21054 ENSMUSG00000114163.1 ENSMUSG00000114163 ENSMUST00000220590 Gm32296 lincRNA Interval_165953 chr9 54914057 54914318 + 0 NA Intergenic Intergenic -3160 ENSMUSG00000035878.13 ENSMUSG00000035878 ENSMUST00000135648 Hykk protein_coding Interval_153829 chr8 9332317 9332641 + 0 NA intron (ENSMUSG00000079157.4, intron 1 of 3) protein_coding-intron (ENSMUSG00000079157.4, intron 1 of 2) 12647 ENSMUSG00000109286.1 ENSMUSG00000109286 ENSMUST00000207837 Gm44541 TEC Interval_153670 chr8 4408405 4408656 + 0 NA Intergenic Intergenic -5685 ENSMUSG00000109356.1 ENSMUSG00000109356 ENSMUST00000208928 Gm45118 unprocessed_pseudogene Interval_161821 chr8 123003788 123005582 + 0 NA intron (ENSMUSG00000035569.17, intron 1 of 2) protein_coding-intron (ENSMUSG00000035569.17, intron 1 of 12) -21742 ENSMUSG00000065915.1 ENSMUSG00000065915 ENSMUST00000083981 Gm24445 snRNA Interval_31832 chr11 103210253 103210890 + 0 NA intron (ENSMUSG00000044787.7, intron 2 of 4) protein_coding-intron (ENSMUSG00000044787.7, intron 2 of 4) -2048 ENSMUSG00000020940.13 ENSMUSG00000020940 ENSMUST00000140559 Efcab15 protein_coding Interval_35180 chr12 17835195 17835932 + 0 NA Intergenic Intergenic -46634 ENSMUSG00000113294.1 ENSMUSG00000113294 ENSMUST00000223226 Gm49326 unprocessed_pseudogene Interval_45615 chr13 56267146 56267572 + 0 NA Intergenic Intergenic -15196 ENSMUSG00000048904.5 ENSMUSG00000048904 ENSMUST00000058475 Neurog1 protein_coding Interval_158894 chr8 87782447 87783391 + 0 NA TTS (ENSMUSG00000045333.15) protein_coding-TTS (ENSMUSG00000045333.15) 146262 ENSMUSG00000089301.1 ENSMUSG00000089301 ENSMUST00000158676 Gm24841 misc_RNA Interval_40614 chr12 106037025 106037583 + 0 NA intron (ENSMUSG00000021115.15, intron 2 of 2) protein_coding-intron (ENSMUSG00000021115.15, intron 2 of 14) 11497 ENSMUSG00000021115.15 ENSMUSG00000021115 ENSMUST00000220629 Vrk1 protein_coding Interval_170528 chr9 108539164 108539760 + 0 NA intron (ENSMUSG00000006673.14, intron 3 of 5) protein_coding-intron (ENSMUSG00000006673.14, intron 4 of 10) -4752 ENSMUSG00000103970.1 ENSMUSG00000103970 ENSMUST00000192908 Gm37678 TEC Interval_29360 chr11 83429547 83429979 + 0 NA promoter-TSS (ENSMUSG00000020686.12) protein_coding-promoter-TSS (ENSMUSG00000020686.12) -308 ENSMUSG00000020686.12 ENSMUSG00000020686 ENSMUST00000147301 Gas2l2 protein_coding Interval_142446 chr6 142362966 142363409 + 0 NA TTS (ENSMUSG00000041671.13) protein_coding-TTS (ENSMUSG00000041671.13) 17520 ENSMUSG00000041671.13 ENSMUSG00000041671 ENSMUST00000153912 Pyroxd1 protein_coding Interval_30812 chr11 96642677 96642926 + 0 NA intron (ENSMUSG00000057058.16, intron 4 of 7) protein_coding-intron (ENSMUSG00000057058.16, intron 4 of 11) -124001 ENSMUSG00000085242.1 ENSMUSG00000085242 ENSMUST00000124865 Gm11537 antisense Interval_21204 chr10 127205544 127205743 + 0 NA exon (ENSMUSG00000025417.8, exon 3 of 3) protein_coding-exon (ENSMUSG00000025417.8, exon 3 of 3) 5942 ENSMUSG00000025417.8 ENSMUSG00000025417 ENSMUST00000218386 Pip4k2c protein_coding Interval_174290 chrX 143663981 143665012 + 0 NA promoter-TSS (ENSMUSG00000031284.16) protein_coding-promoter-TSS (ENSMUSG00000031284.16) -28790 ENSMUSG00000031284.16 ENSMUSG00000031284 ENSMUST00000172330 Pak3 protein_coding Interval_55203 chr14 79303072 79303328 + 0 NA Intergenic Intergenic -1555 ENSMUSG00000022018.7 ENSMUSG00000022018 ENSMUST00000022595 Rgcc protein_coding Interval_140046 chr6 113634211 113634763 + 0 NA Intergenic Intergenic -1343 ENSMUSG00000097671.2 ENSMUSG00000097671 ENSMUST00000180964 1700015O11Rik lincRNA Interval_117844 chr4 126576899 126577533 + 0 NA intron (ENSMUSG00000042489.15, intron 7 of 7) protein_coding-intron (ENSMUSG00000042489.15, intron 14 of 25) 7593 ENSMUSG00000081319.1 ENSMUSG00000081319 ENSMUST00000121439 Gm12936 processed_pseudogene Interval_124199 chr5 40089395 40090091 + 0 NA Intergenic Intergenic -104115 ENSMUSG00000107070.1 ENSMUSG00000107070 ENSMUST00000200925 Gm35191 lincRNA Interval_161627 chr8 121659982 121661200 + 0 NA intron (ENSMUSG00000092329.1, intron 1 of 15) protein_coding-intron (ENSMUSG00000092329.1, intron 1 of 15) 6115 ENSMUSG00000064642.1 ENSMUSG00000064642 ENSMUST00000082708 Gm23299 snoRNA Interval_79514 chr18 32598393 32598624 + 0 NA Intergenic Intergenic 23548 ENSMUSG00000087715.1 ENSMUSG00000087715 ENSMUST00000157090 Gm25826 snoRNA Interval_66468 chr16 34066889 34067791 + 0 NA intron (ENSMUSG00000061751.16, intron 33 of 48) protein_coding-intron (ENSMUSG00000061751.16, intron 34 of 59) 28688 ENSMUSG00000061751.16 ENSMUSG00000061751 ENSMUST00000132569 Kalrn protein_coding Interval_163788 chr9 25750721 25752048 + 0 NA Intergenic Intergenic -6171 ENSMUSG00000111416.1 ENSMUSG00000111416 ENSMUST00000215068 Gm48331 processed_pseudogene Interval_57139 chr15 6882269 6882967 + 0 NA Intergenic Intergenic -8361 ENSMUSG00000022146.12 ENSMUSG00000022146 ENSMUST00000177263 Osmr protein_coding Interval_46157 chr13 62091127 62092607 + 0 NA intron (ENSMUSG00000114036.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000114036.1, intron 1 of 1) -5903 ENSMUSG00000113566.1 ENSMUSG00000113566 ENSMUST00000221554 Gm40977 lincRNA Interval_87970 chr19 57455339 57455775 + 0 NA intron (ENSMUSG00000025086.13, intron 1 of 3) protein_coding-intron (ENSMUSG00000025086.13, intron 1 of 6) 2600 ENSMUSG00000025086.13 ENSMUSG00000025086 ENSMUST00000238107 Trub1 protein_coding Interval_10215 chr1 167249219 167250193 + 0 NA intron (ENSMUSG00000103139.1, intron 3 of 3) protein_coding-intron (ENSMUSG00000026558.13, intron 1 of 6) 7249 ENSMUSG00000103139.1 ENSMUSG00000103139 ENSMUST00000193076 Gm37982 antisense Interval_164073 chr9 31307996 31308371 + 0 NA intron (ENSMUSG00000042496.18, intron 1 of 21) protein_coding-intron (ENSMUSG00000042496.18, intron 1 of 6) -5370 ENSMUSG00000042496.18 ENSMUSG00000042496 ENSMUST00000074510 Prdm10 protein_coding Interval_131635 chr5 138977928 138978894 + 0 NA intron (ENSMUSG00000025856.15, intron 5 of 5) protein_coding-intron (ENSMUSG00000025856.15, intron 6 of 6) 15870 ENSMUSG00000025856.15 ENSMUSG00000025856 ENSMUST00000132051 Pdgfa protein_coding Interval_151356 chr7 121633573 121633975 + 0 NA Intergenic Intergenic 33041 ENSMUSG00000063317.7 ENSMUSG00000063317 ENSMUST00000205473 Usp31 protein_coding Interval_154770 chr8 23226166 23226537 + 0 NA TTS (ENSMUSG00000031546.6) protein_coding-TTS (ENSMUSG00000031546.6) 11308 ENSMUSG00000031546.6 ENSMUSG00000031546 ENSMUST00000033950 Gins4 protein_coding Interval_12560 chr10 3164499 3165354 + 0 NA Intergenic Intergenic -11094 ENSMUSG00000111625.1 ENSMUSG00000111625 ENSMUST00000213719 Gm48097 processed_pseudogene Interval_84764 chr19 16366407 16368259 + 0 NA intron (ENSMUSG00000024639.5, intron 5 of 6) protein_coding-intron (ENSMUSG00000024639.5, intron 5 of 6) -46161 ENSMUSG00000118142.1 ENSMUSG00000118142 ENSMUST00000237669 Gm19312 processed_pseudogene Interval_145556 chr7 35599534 35600669 + 0 NA intron (ENSMUSG00000034867.16, intron 2 of 2) protein_coding-intron (ENSMUSG00000034867.16, intron 2 of 28) -14519 ENSMUSG00000056043.5 ENSMUSG00000056043 ENSMUST00000069912 Rgs9bp protein_coding Interval_76946 chr17 85101732 85102581 + 0 NA intron (ENSMUSG00000071037.6, intron 2 of 3) protein_coding-intron (ENSMUSG00000071037.6, intron 2 of 10) 11550 ENSMUSG00000071037.6 ENSMUSG00000071037 ENSMUST00000234501 Camkmt protein_coding Interval_85471 chr19 26876746 26878026 + 0 NA Intergenic Intergenic -8495 ENSMUSG00000074913.3 ENSMUSG00000074913 ENSMUST00000099536 Gm815 protein_coding Interval_133243 chr5 150819035 150821387 + 0 NA Intergenic Intergenic -2648 ENSMUSG00000106692.1 ENSMUSG00000106692 ENSMUST00000201101 Gm36447 lincRNA Interval_79936 chr18 36053714 36054092 + 0 NA intron (ENSMUSG00000060275.14, intron 1 of 9) protein_coding-intron (ENSMUSG00000060275.14, intron 2 of 7) 14722 ENSMUSG00000060275.14 ENSMUSG00000060275 ENSMUST00000115705 Nrg2 protein_coding Interval_64055 chr16 6777492 6778997 + 0 NA intron (ENSMUSG00000008658.16, intron 3 of 11) protein_coding-intron (ENSMUSG00000008658.16, intron 2 of 14) -415503 ENSMUSG00000008658.16 ENSMUSG00000008658 ENSMUST00000231031 Rbfox1 protein_coding Interval_151365 chr7 121802865 121804827 + 0 NA Intergenic Intergenic 35219 ENSMUSG00000108410.1 ENSMUSG00000108410 ENSMUST00000205603 Gm44740 TEC Interval_122818 chr5 25745415 25745643 + 0 NA Intergenic Intergenic -14510 ENSMUSG00000056367.14 ENSMUSG00000056367 ENSMUST00000198693 Actr3b protein_coding Interval_147044 chr7 59264942 59265151 + 0 NA intron (ENSMUSG00000025326.12, intron 4 of 5) protein_coding-intron (ENSMUSG00000025326.12, intron 2 of 10) -1112 ENSMUSG00000108943.1 ENSMUSG00000108943 ENSMUST00000207177 Gm44559 TEC Interval_28064 chr11 72578145 72578915 + 0 NA Intergenic Intergenic -5200 ENSMUSG00000081675.1 ENSMUSG00000081675 ENSMUST00000120676 Gm12712 processed_pseudogene Interval_163844 chr9 27106107 27106374 + 0 NA intron (ENSMUSG00000031990.15, intron 2 of 5) protein_coding-intron (ENSMUSG00000031990.15, intron 2 of 8) 7689 ENSMUSG00000111390.1 ENSMUSG00000111390 ENSMUST00000217654 Gm48796 antisense Interval_142630 chr6 144416202 144416418 + 0 NA intron (ENSMUSG00000041540.16, intron 4 of 6) protein_coding-intron (ENSMUSG00000041540.16, intron 4 of 13) -64915 ENSMUSG00000087157.1 ENSMUSG00000087157 ENSMUST00000156443 Sox5os2 antisense Interval_7843 chr1 134085958 134087324 + 0 NA Intergenic Intergenic -7521 ENSMUSG00000020423.6 ENSMUSG00000020423 ENSMUST00000020692 Btg2 protein_coding Interval_153912 chr8 10971646 10973349 + 0 NA Intergenic Intergenic -1683 ENSMUSG00000109508.1 ENSMUSG00000109508 ENSMUST00000208277 Gm44956 lincRNA Interval_68190 chr16 67415578 67415747 + 0 NA intron (ENSMUSG00000064115.13, intron 1 of 9) protein_coding-intron (ENSMUSG00000064115.13, intron 1 of 9) -177312 ENSMUSG00000116904.1 ENSMUSG00000116904 ENSMUST00000232322 Gm49640 processed_pseudogene Interval_151415 chr7 122199273 122200332 + 0 NA Intergenic Intergenic -13595 ENSMUSG00000030866.8 ENSMUSG00000030866 ENSMUST00000033153 Ern2 protein_coding Interval_153879 chr8 10570255 10570544 + 0 NA exon (ENSMUSG00000039057.11, exon 32 of 35) protein_coding-exon (ENSMUSG00000039057.11, exon 32 of 35) 106514 ENSMUSG00000109258.1 ENSMUSG00000109258 ENSMUST00000208649 5330413D20Rik lincRNA Interval_31267 chr11 99229832 99231391 + 0 NA promoter-TSS (ENSMUSG00000037935.16) protein_coding-promoter-TSS (ENSMUSG00000037935.16) 8264 ENSMUSG00000035849.14 ENSMUSG00000035849 ENSMUST00000154622 Krt222 protein_coding Interval_23536 chr11 23203606 23204501 + 0 NA Intergenic Intergenic -31147 ENSMUSG00000088495.1 ENSMUSG00000088495 ENSMUST00000157870 Gm24398 snoRNA Interval_108005 chr3 119638601 119638913 + 0 NA TTS (ENSMUSG00000087806.1) snoRNA-TTS (ENSMUSG00000087806.1) 117 ENSMUSG00000087806.1 ENSMUSG00000087806 ENSMUST00000157181 Gm23432 snoRNA Interval_149682 chr7 100618850 100619102 + 0 NA intron (ENSMUSG00000030704.14, intron 1 of 7) protein_coding-intron (ENSMUSG00000030704.14, intron 1 of 7) -5542 ENSMUSG00000082210.1 ENSMUSG00000082210 ENSMUST00000117374 Gm14382 processed_pseudogene Interval_95091 chr2 103795860 103798169 + 0 NA promoter-TSS (ENSMUSG00000027184.14) protein_coding-promoter-TSS (ENSMUSG00000027184.14) -146 ENSMUSG00000027184.14 ENSMUSG00000027184 ENSMUST00000146527 Caprin1 protein_coding Interval_131219 chr5 135879678 135880153 + 0 NA Intergenic Intergenic 4258 ENSMUSG00000095502.1 ENSMUSG00000095502 ENSMUST00000179641 Gm22450 snRNA Interval_108249 chr3 122975474 122976225 + 0 NA intron (ENSMUSG00000039701.11, intron 1 of 7) protein_coding-intron (ENSMUSG00000039701.11, intron 1 of 15) 8044 ENSMUSG00000039701.11 ENSMUSG00000039701 ENSMUST00000200188 Usp53 protein_coding Interval_88113 chr19 59260367 59261710 + 0 NA promoter-TSS (ENSMUSG00000025094.8) protein_coding-promoter-TSS (ENSMUSG00000025094.8) 79 ENSMUSG00000025094.8 ENSMUSG00000025094 ENSMUST00000236270 Slc18a2 protein_coding Interval_112351 chr4 40757228 40758271 + 0 NA promoter-TSS (ENSMUSG00000028409.11) protein_coding-promoter-TSS (ENSMUSG00000028409.11) 82 ENSMUSG00000028409.11 ENSMUSG00000028409 ENSMUST00000137415 Smu1 protein_coding Interval_5085 chr1 84859772 84861781 + 0 NA intron (ENSMUSG00000073633.9, intron 2 of 4) protein_coding-intron (ENSMUSG00000073633.9, intron 1 of 3) -8375 ENSMUSG00000073633.9 ENSMUSG00000073633 ENSMUST00000151737 Fbxo36 protein_coding Interval_25381 chr11 47013038 47013249 + 0 NA intron (ENSMUSG00000020354.15, intron 6 of 7) protein_coding-intron (ENSMUSG00000020354.15, intron 6 of 7) 138730 ENSMUSG00000082818.1 ENSMUSG00000082818 ENSMUST00000122081 Gm12175 processed_pseudogene Interval_48582 chr13 100492089 100492952 + 0 NA promoter-TSS (ENSMUSG00000021639.17) protein_coding-promoter-TSS (ENSMUSG00000021639.17) -15325 ENSMUSG00000021639.17 ENSMUSG00000021639 ENSMUST00000152049 Gtf2h2 protein_coding Interval_91208 chr2 35926317 35926652 + 0 NA intron (ENSMUSG00000026885.13, intron 2 of 7) protein_coding-intron (ENSMUSG00000026885.13, intron 3 of 9) 25930 ENSMUSG00000026885.13 ENSMUSG00000026885 ENSMUST00000162172 Ttll11 protein_coding Interval_100821 chr2 172713994 172714882 + 0 NA Intergenic Intergenic 149903 ENSMUSG00000093160.1 ENSMUSG00000093160 ENSMUST00000175419 Gm22773 miRNA Interval_134314 chr6 25019413 25020159 + 0 NA Intergenic Intergenic 27512 ENSMUSG00000107212.1 ENSMUSG00000107212 ENSMUST00000202130 Gm5302 processed_pseudogene Interval_18012 chr10 81354487 81355425 + 0 NA Intergenic Intergenic -2596 ENSMUSG00000034854.8 ENSMUSG00000034854 ENSMUST00000132368 Mfsd12 protein_coding Interval_129619 chr5 121376954 121377174 + 0 NA intron (ENSMUSG00000042726.14, intron 2 of 5) protein_coding-intron (ENSMUSG00000042726.14, intron 6 of 11) -3590 ENSMUSG00000042726.14 ENSMUSG00000042726 ENSMUST00000126550 Trafd1 protein_coding Interval_56213 chr14 113167298 113167532 + 0 NA Intergenic Intergenic 38594 ENSMUSG00000115260.1 ENSMUSG00000115260 ENSMUST00000227945 Gm49005 processed_pseudogene Interval_116311 chr4 109640542 109640746 + 0 NA intron (ENSMUSG00000087641.1, intron 2 of 2) processed_transcript-intron (ENSMUSG00000087641.1, intron 2 of 2) 11062 ENSMUSG00000082771.1 ENSMUSG00000082771 ENSMUST00000118907 Gm12803 processed_pseudogene Interval_15876 chr10 58658746 58659164 + 0 NA intron (ENSMUSG00000003227.4, intron 1 of 11) protein_coding-intron (ENSMUSG00000003227.4, intron 1 of 11) 16699 ENSMUSG00000003227.4 ENSMUSG00000003227 ENSMUST00000003312 Edar protein_coding Interval_105331 chr3 84996520 84997080 + 0 NA intron (ENSMUSG00000102805.5, intron 3 of 9) protein_coding-intron (ENSMUSG00000102805.5, intron 3 of 9) 122909 ENSMUSG00000102919.1 ENSMUSG00000102919 ENSMUST00000193246 Gm37726 TEC Interval_126647 chr5 91652892 91653524 + 0 NA Intergenic Intergenic 84871 ENSMUSG00000107261.1 ENSMUSG00000107261 ENSMUST00000202320 Trmt112-ps1 processed_pseudogene Interval_84317 chr19 10041016 10042186 + 0 NA promoter-TSS (ENSMUSG00000024664.5) protein_coding-promoter-TSS (ENSMUSG00000024664.5) -131 ENSMUSG00000024664.5 ENSMUSG00000024664 ENSMUST00000237226 Fads3 protein_coding Interval_25695 chr11 50832717 50833574 + 0 NA exon (ENSMUSG00000044296.10, exon 5 of 5) protein_coding-exon (ENSMUSG00000044296.10, exon 5 of 5) -5459 ENSMUSG00000044807.13 ENSMUSG00000044807 ENSMUST00000136333 Zfp354c protein_coding Interval_153888 chr8 10738152 10738475 + 0 NA promoter-TSS (ENSMUSG00000109271.1) lincRNA-promoter-TSS (ENSMUSG00000109271.1) -577 ENSMUSG00000109271.1 ENSMUSG00000109271 ENSMUST00000207553 Gm39129 lincRNA Interval_164171 chr9 32146165 32146606 + 0 NA intron (ENSMUSG00000041444.14, intron 1 of 5) protein_coding-intron (ENSMUSG00000041444.14, intron 2 of 21) 28783 ENSMUSG00000111382.1 ENSMUSG00000111382 ENSMUST00000213983 Gm47536 processed_pseudogene Interval_57568 chr15 12435020 12435251 + 0 NA intron (ENSMUSG00000022197.16, intron 5 of 7) protein_coding-intron (ENSMUSG00000022197.16, intron 5 of 23) -22755 ENSMUSG00000022197.16 ENSMUSG00000022197 ENSMUST00000189746 Pdzd2 protein_coding Interval_65264 chr16 21074207 21075009 + 0 NA Intergenic Intergenic -5062 ENSMUSG00000086936.1 ENSMUSG00000086936 ENSMUST00000147052 Gm9697 processed_pseudogene Interval_151762 chr7 126492070 126493481 + 0 NA TTS (ENSMUSG00000032637.15) protein_coding-TTS (ENSMUSG00000032637.15) 3404 ENSMUSG00000073838.10 ENSMUSG00000073838 ENSMUST00000206572 Tufm protein_coding Interval_171178 chr9 115000481 115000888 + 0 NA intron (ENSMUSG00000040875.12, intron 1 of 4) protein_coding-intron (ENSMUSG00000040875.12, intron 1 of 11) 2068 ENSMUSG00000040875.12 ENSMUSG00000040875 ENSMUST00000182413 Osbpl10 protein_coding Interval_170229 chr9 106322831 106323361 + 0 NA intron (ENSMUSG00000099879.1, intron 1 of 1) protein_coding-intron (ENSMUSG00000023345.17, intron 9 of 10) 12737 ENSMUSG00000099879.1 ENSMUSG00000099879 ENSMUST00000185808 Gm29123 antisense Interval_142380 chr6 141209649 141211630 + 0 NA Intergenic Intergenic -39327 ENSMUSG00000041741.10 ENSMUSG00000041741 ENSMUST00000189060 Pde3a protein_coding Interval_71746 chr17 25832536 25833707 + 0 NA promoter-TSS (ENSMUSG00000039615.9) protein_coding-promoter-TSS (ENSMUSG00000039615.9) 283 ENSMUSG00000039615.9 ENSMUSG00000039615 ENSMUST00000235572 Stub1 protein_coding Interval_26436 chr11 57833602 57833800 + 0 NA promoter-TSS (ENSMUSG00000037335.13) protein_coding-promoter-TSS (ENSMUSG00000037335.13) -883 ENSMUSG00000037335.13 ENSMUSG00000037335 ENSMUST00000108845 Hand1 protein_coding Interval_77356 chr17 88191956 88192614 + 0 NA Intergenic Intergenic 23798 ENSMUSG00000117369.1 ENSMUSG00000117369 ENSMUST00000233989 Gm31499 lincRNA Interval_90263 chr2 29404024 29404656 + 0 NA intron (ENSMUSG00000026799.15, intron 1 of 5) protein_coding-intron (ENSMUSG00000026799.15, intron 2 of 7) -7881 ENSMUSG00000086994.1 ENSMUSG00000086994 ENSMUST00000153600 Gm13402 antisense Interval_8169 chr1 136224991 136226074 + 0 NA TTS (ENSMUSG00000041605.16) protein_coding-TTS (ENSMUSG00000041605.16) 4487 ENSMUSG00000041605.16 ENSMUSG00000041605 ENSMUST00000195177 Inava protein_coding Interval_56231 chr14 114080301 114080772 + 0 NA Intergenic Intergenic -91907 ENSMUSG00000115572.1 ENSMUSG00000115572 ENSMUST00000227752 Gm18369 processed_pseudogene Interval_37436 chr12 68753501 68753710 + 0 NA Intergenic Intergenic 58692 ENSMUSG00000112933.1 ENSMUSG00000112933 ENSMUST00000223294 Gm47491 processed_pseudogene Interval_166850 chr9 63192543 63193092 + 0 NA intron (ENSMUSG00000058444.8, intron 21 of 21) protein_coding-intron (ENSMUSG00000058444.8, intron 21 of 21) -45806 ENSMUSG00000022245.15 ENSMUSG00000022245 ENSMUST00000055281 Skor1 protein_coding Interval_171882 chr9 121995207 121996320 + 0 NA promoter-TSS (ENSMUSG00000111873.1) antisense-promoter-TSS (ENSMUSG00000111873.1) 250 ENSMUSG00000066235.7 ENSMUSG00000066235 ENSMUST00000215008 Pomgnt2 protein_coding Interval_47712 chr13 91636974 91637276 + 0 NA intron (ENSMUSG00000003992.15, intron 4 of 6) protein_coding-intron (ENSMUSG00000003992.15, intron 4 of 16) -86131 ENSMUSG00000077278.1 ENSMUSG00000077278 ENSMUST00000104090 Gm22778 snoRNA Interval_141646 chr6 131775183 131775419 + 0 NA Intergenic Intergenic -85238 ENSMUSG00000063478.2 ENSMUSG00000063478 ENSMUST00000080619 Tas2r114 protein_coding Interval_59076 chr15 43214136 43215464 + 0 NA Intergenic Intergenic 3361 ENSMUSG00000098002.1 ENSMUSG00000098002 ENSMUST00000182757 Gm9658 processed_pseudogene Interval_65018 chr16 17977624 17979195 + 0 NA Intergenic Intergenic -2019 ENSMUSG00000059280.4 ENSMUSG00000059280 ENSMUST00000075371 Vpreb2 protein_coding Interval_2366 chr1 38562563 38563263 + 0 NA intron (ENSMUSG00000037138.18, intron 1 of 22) protein_coding-intron (ENSMUSG00000037138.18, intron 2 of 7) 64288 ENSMUSG00000037138.18 ENSMUSG00000037138 ENSMUST00000134963 Aff3 protein_coding Interval_101646 chr3 8491075 8491792 + 0 NA Intergenic Intergenic -18153 ENSMUSG00000027500.10 ENSMUSG00000027500 ENSMUST00000194307 Stmn2 protein_coding Interval_62205 chr15 88802271 88802768 + 0 NA Intergenic Intergenic 16799 ENSMUSG00000035845.17 ENSMUSG00000035845 ENSMUST00000159328 Alg12 protein_coding Interval_113443 chr4 55026726 55027244 + 0 NA intron (ENSMUSG00000060206.11, intron 7 of 12) protein_coding-intron (ENSMUSG00000060206.11, intron 5 of 10) 81937 ENSMUSG00000060206.11 ENSMUSG00000060206 ENSMUST00000079605 Zfp462 protein_coding Interval_11552 chr1 182657574 182658067 + 0 NA Intergenic Intergenic -22119 ENSMUSG00000104376.1 ENSMUSG00000104376 ENSMUST00000192593 Gm37516 TEC Interval_289 KZ289086.1 367912 368274 + 0 NA NA NA NA NA Interval_99660 chr2 164025989 164026306 + 0 NA intron (ENSMUSG00000054582.4, intron 1 of 13) protein_coding-intron (ENSMUSG00000054582.4, intron 1 of 13) -10853 ENSMUSG00000054582.4 ENSMUSG00000054582 ENSMUST00000150523 Pabpc1l protein_coding Interval_115232 chr4 94672187 94672601 + 0 NA intron (ENSMUSG00000028576.12, intron 13 of 19) protein_coding-intron (ENSMUSG00000028576.12, intron 13 of 19) -6786 ENSMUSG00000028576.12 ENSMUSG00000028576 ENSMUST00000152289 Ift74 protein_coding Interval_125695 chr5 73324645 73325251 + 0 NA intron (ENSMUSG00000029153.11, intron 5 of 5) protein_coding-intron (ENSMUSG00000029153.11, intron 6 of 6) 13584 ENSMUSG00000107331.1 ENSMUSG00000107331 ENSMUST00000202887 Gm42732 TEC Interval_6038 chr1 94341733 94343318 + 0 NA Intergenic Intergenic 127362 ENSMUSG00000100347.1 ENSMUSG00000100347 ENSMUST00000187459 Gm7895 processed_pseudogene Interval_86079 chr19 36398270 36398797 + 0 NA intron (ENSMUSG00000024805.16, intron 1 of 5) protein_coding-intron (ENSMUSG00000024805.16, intron 1 of 8) -5914 ENSMUSG00000114409.1 ENSMUSG00000114409 ENSMUST00000225814 Gm9042 processed_pseudogene Interval_49453 chr13 112152459 112153802 + 0 NA Intergenic Intergenic 15014 ENSMUSG00000114361.1 ENSMUSG00000114361 ENSMUST00000224924 Gm31104 processed_pseudogene Interval_108679 chr3 130052155 130053774 + 0 NA intron (ENSMUSG00000001052.15, intron 1 of 1) protein_coding-intron (ENSMUSG00000001052.15, intron 1 of 23) -15448 ENSMUSG00000063328.6 ENSMUSG00000063328 ENSMUST00000076703 Gm9396 processed_pseudogene Interval_46350 chr13 64142003 64142310 + 0 NA exon (ENSMUSG00000044934.13, exon 4 of 4) protein_coding-exon (ENSMUSG00000044934.13, exon 4 of 4) 10329 ENSMUSG00000044934.13 ENSMUSG00000044934 ENSMUST00000117241 Zfp367 protein_coding Interval_95102 chr2 103904328 103904527 + 0 NA Intergenic Intergenic -7597 ENSMUSG00000084756.1 ENSMUSG00000084756 ENSMUST00000149025 Gm13881 lincRNA Interval_146940 chr7 56049709 56050745 + 0 NA promoter-TSS (ENSMUSG00000030451.16) protein_coding-promoter-TSS (ENSMUSG00000030451.16) -288 ENSMUSG00000108659.1 ENSMUSG00000108659 ENSMUST00000206544 Gm34121 processed_transcript Interval_148186 chr7 79695564 79695801 + 0 NA exon (ENSMUSG00000046591.10, exon 20 of 22) protein_coding-exon (ENSMUSG00000046591.10, exon 20 of 22) -14689 ENSMUSG00000039133.8 ENSMUSG00000039133 ENSMUST00000197011 9330171B17Rik antisense Interval_157250 chr8 68462511 68462779 + 0 NA intron (ENSMUSG00000036356.15, intron 1 of 1) protein_coding-intron (ENSMUSG00000036356.15, intron 3 of 9) 5497 ENSMUSG00000087489.1 ENSMUSG00000087489 ENSMUST00000132076 Gm15656 antisense Interval_57305 chr15 8636358 8636585 + 0 NA intron (ENSMUSG00000005360.14, intron 5 of 5) protein_coding-intron (ENSMUSG00000005360.14, intron 9 of 9) 18602 ENSMUSG00000103047.1 ENSMUSG00000103047 ENSMUST00000195237 Gm37310 TEC Interval_8598 chr1 143679730 143680031 + 0 NA intron (ENSMUSG00000026361.9, intron 6 of 10) protein_coding-intron (ENSMUSG00000026361.9, intron 6 of 16) -3350 ENSMUSG00000089640.1 ENSMUSG00000089640 ENSMUST00000161973 Gm6397 processed_pseudogene Interval_92164 chr2 55026527 55027010 + 0 NA intron (ENSMUSG00000060988.12, intron 8 of 11) protein_coding-intron (ENSMUSG00000060988.12, intron 7 of 10) 22783 ENSMUSG00000089352.1 ENSMUSG00000089352 ENSMUST00000158727 Gm25489 snRNA Interval_168729 chr9 86467027 86467778 + 0 NA intron (ENSMUSG00000034973.16, intron 1 of 37) protein_coding-intron (ENSMUSG00000034973.16, intron 1 of 36) 248 ENSMUSG00000034973.16 ENSMUSG00000034973 ENSMUST00000187427 Dop1a protein_coding Interval_15855 chr10 58425461 58426230 + 0 NA Intergenic Intergenic -21350 ENSMUSG00000003226.7 ENSMUSG00000003226 ENSMUST00000220131 Ranbp2 protein_coding Interval_29368 chr11 83472064 83473941 + 0 NA promoter-TSS (ENSMUSG00000020680.15) protein_coding-promoter-TSS (ENSMUSG00000020680.15) -109 ENSMUSG00000020680.15 ENSMUSG00000020680 ENSMUST00000133170 Taf15 protein_coding Interval_134985 chr6 34336579 34337604 + 0 NA Intergenic Intergenic -19024 ENSMUSG00000029762.6 ENSMUSG00000029762 ENSMUST00000133370 Akr1b8 protein_coding Interval_111081 chr4 11721945 11722353 + 0 NA Intergenic Intergenic 17692 ENSMUSG00000028214.13 ENSMUSG00000028214 ENSMUST00000029868 Gem protein_coding Interval_23953 chr11 28803475 28804163 + 0 NA intron (ENSMUSG00000085510.1, intron 3 of 3) lincRNA-intron (ENSMUSG00000085510.1, intron 3 of 3) 40091 ENSMUSG00000065415.1 ENSMUSG00000065415 ENSMUST00000083481 Mir217 miRNA Interval_157760 chr8 72830561 72831135 + 0 NA intron (ENSMUSG00000004383.18, intron 13 of 15) protein_coding-intron (ENSMUSG00000004383.18, intron 12 of 14) -35361 ENSMUSG00000110563.1 ENSMUSG00000110563 ENSMUST00000212908 Gm45791 processed_pseudogene Interval_45468 chr13 55305269 55306415 + 0 NA intron (ENSMUSG00000021488.8, intron 18 of 20) protein_coding-intron (ENSMUSG00000021488.8, intron 20 of 22) 16104 ENSMUSG00000034789.8 ENSMUSG00000034789 ENSMUST00000223672 Rab24 protein_coding Interval_130733 chr5 130029022 130029782 + 0 NA promoter-TSS (ENSMUSG00000025532.13) protein_coding-promoter-TSS (ENSMUSG00000025532.13) 91 ENSMUSG00000025532.13 ENSMUSG00000025532 ENSMUST00000202691 Crcp protein_coding Interval_55284 chr14 80215454 80216928 + 0 NA exon (ENSMUSG00000115334.1, exon 1 of 1) processed_pseudogene-exon (ENSMUSG00000115334.1, exon 1 of 1) 1261 ENSMUSG00000115334.1 ENSMUSG00000115334 ENSMUST00000226677 Gm17923 processed_pseudogene Interval_148404 chr7 81057159 81058942 + 0 NA intron (ENSMUSG00000038763.12, intron 1 of 13) protein_coding-intron (ENSMUSG00000038763.12, intron 1 of 13) -1063 ENSMUSG00000085194.1 ENSMUSG00000085194 ENSMUST00000148597 Platr32 sense_intronic Interval_8349 chr1 137653015 137653549 + 0 NA Intergenic Intergenic -81036 ENSMUSG00000088715.1 ENSMUSG00000088715 ENSMUST00000158090 Gm22727 snoRNA Interval_167821 chr9 72881387 72881583 + 0 NA intron (ENSMUSG00000036030.9, intron 11 of 19) protein_coding-intron (ENSMUSG00000036030.9, intron 11 of 19) -7560 ENSMUSG00000102330.1 ENSMUSG00000102330 ENSMUST00000193259 Gm37234 TEC Interval_102782 chr3 31001295 31001685 + 0 NA intron (ENSMUSG00000037643.14, intron 1 of 17) protein_coding-intron (ENSMUSG00000037643.14, intron 1 of 17) 26841 ENSMUSG00000102741.1 ENSMUSG00000102741 ENSMUST00000193442 Gm2979 processed_pseudogene Interval_101385 chr2 180953008 180955099 + 0 NA promoter-TSS (ENSMUSG00000087293.1) antisense-promoter-TSS (ENSMUSG00000087293.1) -411 ENSMUSG00000087293.1 ENSMUSG00000087293 ENSMUST00000154616 Gm14341 antisense Interval_134606 chr6 29909104 29909371 + 0 NA TTS (ENSMUSG00000029772.17) protein_coding-TTS (ENSMUSG00000029772.17) 6396 ENSMUSG00000107012.1 ENSMUSG00000107012 ENSMUST00000201689 4930528J11Rik TEC Interval_93385 chr2 72581085 72582089 + 0 NA Intergenic Intergenic -10765 ENSMUSG00000080865.1 ENSMUSG00000080865 ENSMUST00000121450 Eif1-ps3 processed_pseudogene Interval_84662 chr19 14816370 14816705 + 0 NA Intergenic Intergenic -98057 ENSMUSG00000084675.1 ENSMUSG00000084675 ENSMUST00000122726 Gm26026 snRNA Interval_145818 chr7 39552040 39553257 + 0 NA intron (ENSMUSG00000108621.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000108621.1, intron 1 of 5) 148 ENSMUSG00000108621.1 ENSMUSG00000108621 ENSMUST00000186011 Gm37494 lincRNA Interval_2576 chr1 40679906 40681949 + 0 NA promoter-TSS (ENSMUSG00000026062.12) protein_coding-promoter-TSS (ENSMUSG00000026062.12) -670 ENSMUSG00000026062.12 ENSMUSG00000026062 ENSMUST00000192294 Slc9a2 protein_coding Interval_138071 chr6 84973017 84973303 + 0 NA intron (ENSMUSG00000033769.16, intron 6 of 6) protein_coding-intron (ENSMUSG00000033769.16, intron 6 of 16) 52037 ENSMUSG00000108012.1 ENSMUSG00000108012 ENSMUST00000204154 Gm44012 antisense Interval_74742 chr17 56266051 56267122 + 0 NA Intergenic Intergenic 9776 ENSMUSG00000043683.4 ENSMUSG00000043683 ENSMUST00000060253 Fem1a protein_coding Interval_50085 chr14 7876974 7877708 + 0 NA intron (ENSMUSG00000025278.9, intron 4 of 45) protein_coding-intron (ENSMUSG00000025278.9, intron 4 of 45) -7400 ENSMUSG00000025278.9 ENSMUSG00000025278 ENSMUST00000228206 Flnb protein_coding Interval_122026 chr5 14218824 14219106 + 0 NA intron (ENSMUSG00000063531.7, intron 5 of 15) protein_coding-intron (ENSMUSG00000063531.7, intron 5 of 16) -11142 ENSMUSG00000063531.7 ENSMUSG00000063531 ENSMUST00000199698 Sema3e protein_coding Interval_22615 chr11 12293191 12293427 + 0 NA intron (ENSMUSG00000020173.17, intron 4 of 4) protein_coding-intron (ENSMUSG00000020173.17, intron 9 of 14) -28966 ENSMUSG00000086584.8 ENSMUSG00000086584 ENSMUST00000174550 Gm12002 antisense Interval_91122 chr2 35267767 35268004 + 0 NA intron (ENSMUSG00000026879.14, intron 2 of 17) protein_coding-intron (ENSMUSG00000026879.14, intron 2 of 5) 11501 ENSMUSG00000026879.14 ENSMUSG00000026879 ENSMUST00000124323 Gsn protein_coding Interval_47115 chr13 75905969 75906526 + 0 NA TTS (ENSMUSG00000070170.1) snoRNA-TTS (ENSMUSG00000070170.1) 1100 ENSMUSG00000070170.1 ENSMUSG00000070170 ENSMUST00000093660 Gm24163 snoRNA Interval_127203 chr5 101284691 101285812 + 0 NA Intergenic Intergenic -20327 ENSMUSG00000105965.1 ENSMUSG00000105965 ENSMUST00000197114 Cycs-ps2 processed_pseudogene Interval_61903 chr15 85048353 85048716 + 0 NA exon (ENSMUSG00000022434.8, exon 4 of 9) protein_coding-exon (ENSMUSG00000022434.8, exon 4 of 9) 11347 ENSMUSG00000022434.8 ENSMUSG00000022434 ENSMUST00000229691 Fam118a protein_coding Interval_34516 chr12 4856320 4856521 + 0 NA intron (ENSMUSG00000051721.6, intron 3 of 3) protein_coding-intron (ENSMUSG00000051721.6, intron 2 of 2) 12841 ENSMUSG00000037336.14 ENSMUSG00000037336 ENSMUST00000147241 Mfsd2b protein_coding Interval_36083 chr12 35342496 35342775 + 0 NA Intergenic Intergenic 33744 ENSMUSG00000105488.1 ENSMUSG00000105488 ENSMUST00000199843 Gm44396 miRNA Interval_149209 chr7 96284548 96285257 + 0 NA intron (ENSMUSG00000048078.16, intron 1 of 32) protein_coding-intron (ENSMUSG00000048078.16, intron 1 of 32) -20765 ENSMUSG00000099030.1 ENSMUSG00000099030 ENSMUST00000184738 Mir6394 miRNA Interval_83984 chr19 5943895 5944423 + 0 NA promoter-TSS (ENSMUSG00000024833.15) protein_coding-promoter-TSS (ENSMUSG00000024833.15) -19343 ENSMUSG00000045664.5 ENSMUSG00000045664 ENSMUST00000055458 Cdc42ep2 protein_coding Interval_37608 chr12 70284803 70285694 + 0 NA intron (ENSMUSG00000021071.17, intron 3 of 9) protein_coding-intron (ENSMUSG00000021071.17, intron 3 of 11) -28121 ENSMUSG00000021071.17 ENSMUSG00000021071 ENSMUST00000220557 Trim9 protein_coding Interval_126325 chr5 86684395 86686032 + 0 NA exon (ENSMUSG00000106507.1, exon 1 of 1) lincRNA-exon (ENSMUSG00000106507.1, exon 1 of 1) 1427 ENSMUSG00000106507.1 ENSMUSG00000106507 ENSMUST00000197865 Gm43056 lincRNA Interval_116301 chr4 109475801 109477304 + 0 NA exon (ENSMUSG00000028557.10, exon 1 of 3) protein_coding-exon (ENSMUSG00000028557.10, exon 1 of 3) 8176 ENSMUSG00000028557.10 ENSMUSG00000028557 ENSMUST00000145980 Rnf11 protein_coding Interval_81772 chr18 64539225 64539792 + 0 NA intron (ENSMUSG00000039529.9, intron 24 of 27) protein_coding-intron (ENSMUSG00000039529.9, intron 24 of 27) -27631 ENSMUSG00000024587.10 ENSMUSG00000024587 ENSMUST00000237027 Nars protein_coding Interval_45785 chr13 58066400 58068333 + 0 NA intron (ENSMUSG00000014164.15, intron 4 of 14) protein_coding-intron (ENSMUSG00000014164.15, intron 6 of 16) -44166 ENSMUSG00000077962.1 ENSMUSG00000077962 ENSMUST00000104769 Mir874 miRNA Interval_152166 chr7 130315380 130315618 + 0 NA intron (ENSMUSG00000030849.18, intron 2 of 6) protein_coding-intron (ENSMUSG00000030849.18, intron 2 of 6) 38863 ENSMUSG00000082988.3 ENSMUSG00000082988 ENSMUST00000121836 Gm5903 processed_pseudogene Interval_147945 chr7 75781687 75782530 + 0 NA promoter-TSS (ENSMUSG00000097415.2) lincRNA-promoter-TSS (ENSMUSG00000097415.2) -1924 ENSMUSG00000097116.1 ENSMUSG00000097116 ENSMUST00000180744 Gm26729 processed_pseudogene Interval_173035 chrX 66652625 66653416 + 0 NA promoter-TSS (ENSMUSG00000036790.5) protein_coding-promoter-TSS (ENSMUSG00000036790.5) 3702 ENSMUSG00000036790.5 ENSMUSG00000036790 ENSMUST00000036043 Slitrk2 protein_coding Interval_17093 chr10 71310065 71310665 + 0 NA promoter-TSS (ENSMUSG00000093732.1) lincRNA-promoter-TSS (ENSMUSG00000093732.1) -380 ENSMUSG00000093732.1 ENSMUSG00000093732 ENSMUST00000177104 Gm20609 lincRNA Interval_29891 chr11 87545866 87546776 + 0 NA intron (ENSMUSG00000010342.16, intron 3 of 5) protein_coding-intron (ENSMUSG00000010342.16, intron 27 of 30) -20332 ENSMUSG00000020486.19 ENSMUSG00000020486 ENSMUST00000143950 Septin4 protein_coding Interval_137138 chr6 67944159 67944619 + 0 NA Intergenic Intergenic -1849 ENSMUSG00000096632.2 ENSMUSG00000096632 ENSMUST00000196768 Igkv9-124 IG_V_gene Interval_66746 chr16 36968358 36968596 + 0 NA intron (ENSMUSG00000047746.14, intron 1 of 1) protein_coding-intron (ENSMUSG00000047746.14, intron 3 of 3) 10299 ENSMUSG00000047746.14 ENSMUSG00000047746 ENSMUST00000114806 Fbxo40 protein_coding Interval_61377 chr15 81201949 81202937 + 0 NA Intergenic Intergenic 6717 ENSMUSG00000116122.1 ENSMUSG00000116122 ENSMUST00000230413 Gm49537 processed_pseudogene Interval_1956 chr1 34893779 34894200 + 0 NA Intergenic Intergenic 16333 ENSMUSG00000026123.11 ENSMUSG00000026123 ENSMUST00000191722 Plekhb2 protein_coding Interval_76738 chr17 83759992 83760801 + 0 NA intron (ENSMUSG00000055817.18, intron 6 of 16) protein_coding-intron (ENSMUSG00000055817.18, intron 6 of 16) 31232 ENSMUSG00000055817.18 ENSMUSG00000055817 ENSMUST00000175920 Mta3 protein_coding Interval_19719 chr10 108291529 108292872 + 0 NA Intergenic Intergenic -40617 ENSMUSG00000035873.8 ENSMUSG00000035873 ENSMUST00000218332 Pawr protein_coding Interval_20200 chr10 115768454 115768693 + 0 NA Intergenic Intergenic -48259 ENSMUSG00000034127.15 ENSMUSG00000034127 ENSMUST00000035563 Tspan8 protein_coding Interval_139367 chr6 99520191 99523625 + 0 NA promoter-TSS (ENSMUSG00000030067.17) protein_coding-promoter-TSS (ENSMUSG00000030067.17) -37206 ENSMUSG00000088699.1 ENSMUSG00000088699 ENSMUST00000158074 Gm22328 miRNA Interval_66220 chr16 32394947 32395492 + 0 NA Intergenic Intergenic -5287 ENSMUSG00000079625.2 ENSMUSG00000079625 ENSMUST00000115149 Tm4sf19 protein_coding Interval_61453 chr15 81721931 81723760 + 0 NA intron (ENSMUSG00000022391.16, intron 2 of 4) protein_coding-intron (ENSMUSG00000022391.16, intron 2 of 15) 22685 ENSMUSG00000022391.16 ENSMUSG00000022391 ENSMUST00000230726 Rangap1 protein_coding Interval_4148 chr1 70787083 70787561 + 0 NA intron (ENSMUSG00000045648.15, intron 5 of 5) protein_coding-intron (ENSMUSG00000045648.15, intron 3 of 3) 61399 ENSMUSG00000045648.15 ENSMUSG00000045648 ENSMUST00000162182 Vwc2l protein_coding Interval_4691 chr1 77314167 77314388 + 0 NA Intergenic Intergenic -167285 ENSMUSG00000102904.1 ENSMUSG00000102904 ENSMUST00000193479 Gm38265 TEC Interval_79133 chr18 24860883 24861905 + 0 NA intron (ENSMUSG00000034295.10, intron 3 of 24) protein_coding-intron (ENSMUSG00000034295.10, intron 3 of 26) 100231 ENSMUSG00000088920.1 ENSMUSG00000088920 ENSMUST00000158295 Gm24294 misc_RNA Interval_48274 chr13 97600026 97600607 + 0 NA Intergenic Intergenic -9220 ENSMUSG00000114599.1 ENSMUSG00000114599 ENSMUST00000225459 Gm48070 processed_pseudogene Interval_164654 chr9 40348565 40349384 + 0 NA intron (ENSMUSG00000040111.17, intron 2 of 20) protein_coding-intron (ENSMUSG00000040111.17, intron 2 of 19) -6036 ENSMUSG00000111271.1 ENSMUSG00000111271 ENSMUST00000217414 Gm48127 sense_intronic Interval_4184 chr1 71442361 71442555 + 0 NA Intergenic Intergenic 51356 ENSMUSG00000101617.1 ENSMUSG00000101617 ENSMUST00000186254 Gm6947 processed_pseudogene Interval_141325 chr6 127249682 127250688 + 0 NA Intergenic Intergenic 4459 ENSMUSG00000107013.1 ENSMUSG00000107013 ENSMUST00000202533 Gm43635 lincRNA Interval_109378 chr3 140941477 140941731 + 0 NA Intergenic Intergenic -10272 ENSMUSG00000106540.1 ENSMUSG00000106540 ENSMUST00000196030 4930590L14Rik lincRNA Interval_59993 chr15 63519940 63520291 + 0 NA intron (ENSMUSG00000115520.2, intron 2 of 8) lincRNA-intron (ENSMUSG00000115520.2, intron 2 of 8) -27822 ENSMUSG00000115377.1 ENSMUSG00000115377 ENSMUST00000227647 Gm4942 processed_pseudogene Interval_161093 chr8 117417652 117418002 + 0 NA intron (ENSMUSG00000034390.16, intron 5 of 10) protein_coding-intron (ENSMUSG00000034390.16, intron 5 of 20) -5589 ENSMUSG00000034390.16 ENSMUSG00000034390 ENSMUST00000212884 Cmip protein_coding Interval_133118 chr5 149976168 149977509 + 0 NA Intergenic Intergenic 26476 ENSMUSG00000107056.1 ENSMUSG00000107056 ENSMUST00000202470 Gm21048 processed_pseudogene Interval_139510 chr6 100634642 100637343 + 0 NA intron (ENSMUSG00000035378.17, intron 7 of 10) protein_coding-intron (ENSMUSG00000035378.17, intron 6 of 7) -9052 ENSMUSG00000108019.1 ENSMUSG00000108019 ENSMUST00000203525 Gm44108 processed_pseudogene Interval_129784 chr5 122325235 122325548 + 0 NA TTS (ENSMUSG00000038569.13) protein_coding-TTS (ENSMUSG00000038569.13) 22969 ENSMUSG00000083909.1 ENSMUSG00000083909 ENSMUST00000120513 Gm15842 processed_pseudogene Interval_163704 chr9 24695664 24697020 + 0 NA promoter-TSS (ENSMUSG00000085576.3) protein_coding-promoter-TSS (ENSMUSG00000085576.3) -49 ENSMUSG00000085576.3 ENSMUSG00000085576 ENSMUST00000133010 Dpy19l2 protein_coding Interval_127130 chr5 100489994 100491045 + 0 NA intron (ENSMUSG00000035310.15, intron 1 of 12) protein_coding-intron (ENSMUSG00000035310.15, intron 1 of 12) 8114 ENSMUSG00000035310.15 ENSMUSG00000035310 ENSMUST00000144716 Lin54 protein_coding Interval_72136 chr17 28230578 28231609 + 0 NA Intergenic Intergenic -1681 ENSMUSG00000002250.16 ENSMUSG00000002250 ENSMUST00000233383 Ppard protein_coding Interval_131199 chr5 135763206 135764112 + 0 NA intron (ENSMUSG00000019178.17, intron 3 of 7) protein_coding-intron (ENSMUSG00000019178.17, intron 4 of 8) 14710 ENSMUSG00000019178.17 ENSMUSG00000019178 ENSMUST00000178796 Styxl1 protein_coding Interval_80212 chr18 38296285 38297513 + 0 NA promoter-TSS (ENSMUSG00000060450.14) protein_coding-promoter-TSS (ENSMUSG00000060450.14) 229 ENSMUSG00000060450.14 ENSMUSG00000060450 ENSMUST00000237667 Rnf14 protein_coding Interval_117989 chr4 127487268 127487819 + 0 NA intron (ENSMUSG00000087470.2, intron 2 of 4) lincRNA-intron (ENSMUSG00000087470.2, intron 2 of 5) 12641 ENSMUSG00000087470.2 ENSMUSG00000087470 ENSMUST00000146587 A630031M04Rik lincRNA Interval_20621 chr10 119631368 119631656 + 0 NA intron (ENSMUSG00000034813.18, intron 1 of 21) protein_coding-intron (ENSMUSG00000034813.18, intron 1 of 22) -13792 ENSMUSG00000112555.1 ENSMUSG00000112555 ENSMUST00000218599 Gm47027 antisense Interval_36478 chr12 45614273 45615610 + 0 NA Intergenic Intergenic -41654 ENSMUSG00000112768.1 ENSMUSG00000112768 ENSMUST00000218809 Gm48517 unprocessed_pseudogene Interval_58631 chr15 36695457 36696000 + 0 NA promoter-TSS (ENSMUSG00000115127.1) lincRNA-promoter-TSS (ENSMUSG00000115127.1) -63 ENSMUSG00000115127.1 ENSMUSG00000115127 ENSMUST00000226482 Gm46515 lincRNA Interval_57137 chr15 6873444 6875082 + 0 NA promoter-TSS (ENSMUSG00000022146.12) protein_coding-promoter-TSS (ENSMUSG00000022146.12) -6 ENSMUSG00000022146.12 ENSMUSG00000022146 ENSMUST00000177263 Osmr protein_coding Interval_133946 chr6 16283566 16284306 + 0 NA Intergenic Intergenic 46309 ENSMUSG00000108089.1 ENSMUSG00000108089 ENSMUST00000203594 Gm3148 processed_pseudogene Interval_15154 chr10 42940641 42940890 + 0 NA intron (ENSMUSG00000044770.14, intron 1 of 3) protein_coding-intron (ENSMUSG00000044770.14, intron 6 of 8) -51968 ENSMUSG00000111086.1 ENSMUSG00000111086 ENSMUST00000214070 Gm48671 lincRNA Interval_132558 chr5 146317620 146317905 + 0 NA Intergenic Intergenic 31586 ENSMUSG00000029635.15 ENSMUSG00000029635 ENSMUST00000160924 Cdk8 protein_coding Interval_150994 chr7 117472170 117473034 + 0 NA intron (ENSMUSG00000030657.11, intron 1 of 6) protein_coding-intron (ENSMUSG00000030657.11, intron 1 of 11) -2890 ENSMUSG00000030657.11 ENSMUSG00000030657 ENSMUST00000161889 Xylt1 protein_coding Interval_92918 chr2 68546154 68546386 + 0 NA Intergenic Intergenic -8285 ENSMUSG00000075312.4 ENSMUSG00000075312 ENSMUST00000121239 Gm13597 processed_pseudogene Interval_34429 chr12 4107130 4108524 + 0 NA exon (ENSMUSG00000020657.16, exon 7 of 7) protein_coding-exon (ENSMUSG00000020657.16, exon 7 of 7) 19245 ENSMUSG00000020657.16 ENSMUSG00000020657 ENSMUST00000220273 Dnajc27 protein_coding Interval_13049 chr10 10355716 10356030 + 0 NA intron (ENSMUSG00000050994.20, intron 30 of 36) protein_coding-intron (ENSMUSG00000050994.20, intron 18 of 24) 12758 ENSMUSG00000083257.1 ENSMUSG00000083257 ENSMUST00000118589 Gm15568 processed_pseudogene Interval_28496 chr11 76350663 76351953 + 0 NA intron (ENSMUSG00000020844.6, intron 1 of 7) protein_coding-intron (ENSMUSG00000020844.6, intron 1 of 7) 47760 ENSMUSG00000020844.6 ENSMUSG00000020844 ENSMUST00000131472 Nxn protein_coding Interval_133742 chr6 10969579 10971207 + 0 NA TTS (ENSMUSG00000107847.1) lincRNA-TTS (ENSMUSG00000107847.1) 3985 ENSMUSG00000107948.2 ENSMUSG00000107948 ENSMUST00000205141 AA545190 lincRNA Interval_156157 chr8 45248953 45249635 + 0 NA TTS (ENSMUSG00000031645.4) protein_coding-TTS (ENSMUSG00000031645.4) 12737 ENSMUSG00000031645.4 ENSMUSG00000031645 ENSMUST00000210622 F11 protein_coding Interval_126118 chr5 77623417 77623982 + 0 NA Intergenic Intergenic 46147 ENSMUSG00000089415.1 ENSMUSG00000089415 ENSMUST00000158790 Gm22011 snoRNA Interval_42286 chr13 11782740 11783341 + 0 NA intron (ENSMUSG00000021313.16, intron 23 of 24) protein_coding-intron (ENSMUSG00000021313.16, intron 24 of 104) 38694 ENSMUSG00000113269.1 ENSMUSG00000113269 ENSMUST00000221204 Gm47494 TEC Interval_53107 chr14 54494215 54494543 + 0 NA Intergenic Intergenic 18139 ENSMUSG00000022176.11 ENSMUSG00000022176 ENSMUST00000168930 Rem2 protein_coding Interval_70794 chr17 14630878 14631635 + 0 NA Intergenic Intergenic 39610 ENSMUSG00000023885.9 ENSMUSG00000023885 ENSMUST00000232616 Thbs2 protein_coding Interval_163586 chr9 22346278 22346520 + 0 NA intron (ENSMUSG00000036777.8, intron 1 of 3) protein_coding-intron (ENSMUSG00000036777.8, intron 20 of 23) 4857 ENSMUSG00000036777.8 ENSMUSG00000036777 ENSMUST00000215486 Anln protein_coding Interval_3531 chr1 59391597 59392027 + 0 NA exon (ENSMUSG00000099922.1, exon 4 of 4) lincRNA-exon (ENSMUSG00000099922.1, exon 4 of 4) 12882 ENSMUSG00000099922.1 ENSMUSG00000099922 ENSMUST00000187523 Gm29016 lincRNA Interval_3241 chr1 55087288 55088687 + 0 NA promoter-TSS (ENSMUSG00000025980.14) protein_coding-promoter-TSS (ENSMUSG00000025980.14) 256 ENSMUSG00000025980.14 ENSMUSG00000025980 ENSMUST00000144077 Hspd1 protein_coding Interval_114007 chr4 62399334 62399736 + 0 NA intron (ENSMUSG00000066149.11, intron 3 of 4) protein_coding-intron (ENSMUSG00000066149.11, intron 3 of 3) 5979 ENSMUSG00000066149.11 ENSMUSG00000066149 ENSMUST00000156854 Cdc26 protein_coding Interval_164625 chr9 40183007 40183211 + 0 NA intron (ENSMUSG00000051095.7, intron 1 of 1) protein_coding-intron (ENSMUSG00000051095.7, intron 1 of 1) 2189 ENSMUSG00000051095.7 ENSMUSG00000051095 ENSMUST00000062229 Olfr986 protein_coding Interval_56417 chr14 118630529 118631064 + 0 NA intron (ENSMUSG00000032849.14, intron 5 of 29) protein_coding-intron (ENSMUSG00000032849.14, intron 6 of 30) -38324 ENSMUSG00000098433.1 ENSMUSG00000098433 ENSMUST00000184391 Mir6391 miRNA Interval_153682 chr8 4523216 4523501 + 0 NA TTS (ENSMUSG00000008206.16) protein_coding-TTS (ENSMUSG00000008206.16) -1233 ENSMUSG00000102201.1 ENSMUSG00000102201 ENSMUST00000193830 Gm36956 TEC Interval_17465 chr10 77061312 77061825 + 0 NA TTS (ENSMUSG00000001436.15) protein_coding-TTS (ENSMUSG00000001436.15) -1571 ENSMUSG00000001435.15 ENSMUSG00000001435 ENSMUST00000156009 Col18a1 protein_coding Interval_85925 chr19 33366605 33366895 + 0 NA intron (ENSMUSG00000071573.14, intron 2 of 4) polymorphic_pseudogene-intron (ENSMUSG00000071573.14, intron 4 of 6) 25545 ENSMUSG00000071573.14 ENSMUSG00000071573 ENSMUST00000163093 Rnls polymorphic_pseudogene Interval_95982 chr2 118918678 118920079 + 0 NA exon (ENSMUSG00000040007.8, exon 3 of 7) protein_coding-exon (ENSMUSG00000040007.8, exon 3 of 7) -7136 ENSMUSG00000074916.5 ENSMUSG00000074916 ENSMUST00000110837 Chst14 protein_coding Interval_72634 chr17 31210872 31212365 + 0 NA promoter-TSS (ENSMUSG00000042345.15) protein_coding-promoter-TSS (ENSMUSG00000042345.15) -13447 ENSMUSG00000024034.13 ENSMUSG00000024034 ENSMUST00000236793 Tmprss3 protein_coding Interval_93065 chr2 69897064 69898486 + 0 NA exon (ENSMUSG00000044308.17, exon 1 of 39) protein_coding-exon (ENSMUSG00000044308.17, exon 1 of 39) 12047 ENSMUSG00000085735.1 ENSMUSG00000085735 ENSMUST00000129114 Mettl5os antisense Interval_132854 chr5 148341957 148343211 + 0 NA exon (ENSMUSG00000041313.14, exon 1 of 1) protein_coding-exon (ENSMUSG00000041313.14, exon 1 of 1) 57207 ENSMUSG00000041313.14 ENSMUSG00000041313 ENSMUST00000201348 Slc7a1 protein_coding Interval_74249 chr17 47712864 47713627 + 0 NA Intergenic Intergenic -12416 ENSMUSG00000086930.1 ENSMUSG00000086930 ENSMUST00000143962 Frs3os antisense Interval_143564 chr7 12864966 12865192 + 0 NA intron (ENSMUSG00000110320.1, intron 6 of 7) lincRNA-intron (ENSMUSG00000110320.1, intron 6 of 7) 3504 ENSMUSG00000110320.1 ENSMUSG00000110320 ENSMUST00000210319 Gm31152 lincRNA Interval_61521 chr15 82152189 82152675 + 0 NA intron (ENSMUSG00000022463.8, intron 1 of 1) protein_coding-intron (ENSMUSG00000022463.8, intron 1 of 18) 5186 ENSMUSG00000022463.8 ENSMUSG00000022463 ENSMUST00000230955 Srebf2 protein_coding Interval_108080 chr3 121405206 121405539 + 0 NA Intergenic Intergenic 22202 ENSMUSG00000105813.1 ENSMUSG00000105813 ENSMUST00000197338 Gm42928 TEC Interval_8011 chr1 135193218 135194581 + 0 NA Intergenic Intergenic -26218 ENSMUSG00000026424.8 ENSMUSG00000026424 ENSMUST00000027682 Gpr37l1 protein_coding Interval_113274 chr4 52958569 52959093 + 0 NA Intergenic Intergenic -5733 ENSMUSG00000070983.3 ENSMUSG00000070983 ENSMUST00000172257 Olfr270 protein_coding Interval_101932 chr3 12215561 12216369 + 0 NA Intergenic Intergenic 168644 ENSMUSG00000103339.1 ENSMUSG00000103339 ENSMUST00000191859 Gm37996 processed_pseudogene Interval_169910 chr9 102879346 102879795 + 0 NA intron (ENSMUSG00000032547.12, intron 5 of 13) protein_coding-intron (ENSMUSG00000032547.12, intron 6 of 14) -18985 ENSMUSG00000032547.12 ENSMUSG00000032547 ENSMUST00000177274 Ryk protein_coding Interval_122865 chr5 26476282 26477345 + 0 NA intron (ENSMUSG00000029044.9, intron 2 of 2) lincRNA-intron (ENSMUSG00000029044.9, intron 3 of 3) 16476 ENSMUSG00000029044.9 ENSMUSG00000029044 ENSMUST00000196508 4930584F24Rik lincRNA Interval_122740 chr5 25001121 25001568 + 0 NA intron (ENSMUSG00000028944.14, intron 3 of 15) protein_coding-intron (ENSMUSG00000028944.14, intron 3 of 15) 15502 ENSMUSG00000059631.6 ENSMUSG00000059631 ENSMUST00000075081 1500035N22Rik lincRNA Interval_115473 chr4 99235350 99235639 + 0 NA intron (ENSMUSG00000028550.15, intron 10 of 10) protein_coding-intron (ENSMUSG00000028550.15, intron 10 of 10) -37177 ENSMUSG00000104479.1 ENSMUSG00000104479 ENSMUST00000195331 Gm10305 TEC Interval_136953 chr6 65056803 65057634 + 0 NA promoter-TSS (ENSMUSG00000029920.9) protein_coding-promoter-TSS (ENSMUSG00000029920.9) 14551 ENSMUSG00000029920.9 ENSMUSG00000029920 ENSMUST00000203104 Smarcad1 protein_coding Interval_46145 chr13 62002531 62003723 + 0 NA Intergenic Intergenic -3541 ENSMUSG00000113014.1 ENSMUSG00000113014 ENSMUST00000221926 Selenok-ps8 processed_pseudogene Interval_46482 chr13 66487736 66488669 + 0 NA Intergenic Intergenic -2745 ENSMUSG00000114406.1 ENSMUSG00000114406 ENSMUST00000224488 Gm48323 processed_pseudogene Interval_149271 chr7 96842543 96843156 + 0 NA intron (ENSMUSG00000048078.16, intron 5 of 5) protein_coding-intron (ENSMUSG00000048078.16, intron 20 of 32) 20530 ENSMUSG00000089259.1 ENSMUSG00000089259 ENSMUST00000158634 Gm25712 rRNA Interval_35848 chr12 31224509 31226110 + 0 NA Intergenic Intergenic -9263 ENSMUSG00000112518.1 ENSMUSG00000112518 ENSMUST00000218421 Gm48117 processed_pseudogene Interval_143518 chr7 11590191 11590765 + 0 NA intron (ENSMUSG00000110024.1, intron 4 of 6) unprocessed_pseudogene-intron (ENSMUSG00000110024.1, intron 4 of 6) 3716 ENSMUSG00000110024.1 ENSMUSG00000110024 ENSMUST00000209309 Gm7210 unprocessed_pseudogene Interval_37937 chr12 73162692 73162938 + 0 NA intron (ENSMUSG00000021103.12, intron 1 of 6) protein_coding-intron (ENSMUSG00000021103.12, intron 1 of 7) -16910 ENSMUSG00000077785.1 ENSMUSG00000077785 ENSMUST00000104597 Gm23910 snoRNA Interval_51147 chr14 24148613 24149790 + 0 NA promoter-TSS (ENSMUSG00000021782.14) protein_coding-promoter-TSS (ENSMUSG00000021782.14) 1345 ENSMUSG00000021782.14 ENSMUSG00000021782 ENSMUST00000169880 Dlg5 protein_coding Interval_5217 chr1 86501149 86501856 + 0 NA Intergenic Intergenic -25235 ENSMUSG00000026238.14 ENSMUSG00000026238 ENSMUST00000188533 Ptma protein_coding Interval_133492 chr6 5756694 5757837 + 0 NA promoter-TSS (ENSMUSG00000029757.16) protein_coding-promoter-TSS (ENSMUSG00000029757.16) -154 ENSMUSG00000029757.16 ENSMUSG00000029757 ENSMUST00000203520 Dync1i1 protein_coding Interval_48727 chr13 102413951 102414214 + 0 NA Intergenic Intergenic -46930 ENSMUSG00000114444.1 ENSMUSG00000114444 ENSMUST00000225142 Gm47008 processed_pseudogene Interval_128722 chr5 114919096 114920180 + 0 NA intron (ENSMUSG00000087477.1, intron 1 of 1) antisense-intron (ENSMUSG00000087477.1, intron 1 of 1) 3639 ENSMUSG00000087477.1 ENSMUSG00000087477 ENSMUST00000127563 Gm13822 antisense Interval_136906 chr6 64028865 64029189 + 0 NA intron (ENSMUSG00000071424.10, intron 4 of 8) protein_coding-intron (ENSMUSG00000071424.10, intron 4 of 15) 12530 ENSMUSG00000107864.1 ENSMUSG00000107864 ENSMUST00000203666 Gm44072 antisense Interval_40166 chr12 102219243 102219429 + 0 NA intron (ENSMUSG00000041771.14, intron 4 of 16) protein_coding-intron (ENSMUSG00000041771.14, intron 4 of 16) 34351 ENSMUSG00000105037.1 ENSMUSG00000105037 ENSMUST00000200458 Gm25203 snoRNA Interval_81047 chr18 53280582 53281017 + 0 NA intron (ENSMUSG00000024535.16, intron 1 of 3) protein_coding-intron (ENSMUSG00000024535.16, intron 1 of 7) 35071 ENSMUSG00000024535.16 ENSMUSG00000024535 ENSMUST00000025417 Snx24 protein_coding Interval_13983 chr10 25268185 25269232 + 0 NA intron (ENSMUSG00000039166.16, intron 4 of 4) protein_coding-intron (ENSMUSG00000039166.16, intron 4 of 7) -2533 ENSMUSG00000089024.1 ENSMUSG00000089024 ENSMUST00000158399 Gm25016 snoRNA Interval_116611 chr4 116044133 116045050 + 0 NA TTS (ENSMUSG00000028706.14) protein_coding-TTS (ENSMUSG00000028706.14) 8789 ENSMUSG00000028706.14 ENSMUSG00000028706 ENSMUST00000151720 Nsun4 protein_coding Interval_35091 chr12 17252345 17253557 + 0 NA Intergenic Intergenic -13644 ENSMUSG00000020571.13 ENSMUSG00000020571 ENSMUST00000163000 Pdia6 protein_coding Interval_124956 chr5 62138479 62138728 + 0 NA Intergenic Intergenic -6119 ENSMUSG00000077228.1 ENSMUSG00000077228 ENSMUST00000104040 Gm22273 snoRNA Interval_78283 chr18 11572701 11573124 + 0 NA Intergenic Intergenic -52003 ENSMUSG00000117535.1 ENSMUSG00000117535 ENSMUST00000234170 Gm50067 processed_pseudogene Interval_121042 chr4 152392588 152392913 + 0 NA TTS (ENSMUSG00000028931.12) protein_coding-TTS (ENSMUSG00000028931.12) -18050 ENSMUSG00000090057.1 ENSMUSG00000090057 ENSMUST00000161416 Gm16333 antisense Interval_51489 chr14 28375584 28376568 + 0 NA intron (ENSMUSG00000040640.11, intron 15 of 15) protein_coding-intron (ENSMUSG00000040640.11, intron 15 of 15) -39921 ENSMUSG00000114503.1 ENSMUSG00000114503 ENSMUST00000225453 Gm20242 TEC Interval_91981 chr2 52130114 52131972 + 0 NA Intergenic Intergenic 18910 ENSMUSG00000036202.16 ENSMUSG00000036202 ENSMUST00000152178 Rif1 protein_coding Interval_105776 chr3 89268674 89269071 + 0 NA TTS (ENSMUSG00000027953.13) protein_coding-TTS (ENSMUSG00000027953.13) 1607 ENSMUSG00000027953.13 ENSMUSG00000027953 ENSMUST00000130690 Slc50a1 protein_coding Interval_16899 chr10 69639074 69639489 + 0 NA intron (ENSMUSG00000069601.14, intron 2 of 2) protein_coding-intron (ENSMUSG00000069601.14, intron 1 of 16) -72920 ENSMUSG00000112729.1 ENSMUSG00000112729 ENSMUST00000220152 Gm46231 processed_pseudogene Interval_57282 chr15 8390294 8390503 + 0 NA intron (ENSMUSG00000022141.7, intron 1 of 46) protein_coding-intron (ENSMUSG00000022141.7, intron 1 of 46) 54065 ENSMUSG00000022141.7 ENSMUSG00000022141 ENSMUST00000052965 Nipbl protein_coding Interval_17471 chr10 77113458 77114110 + 0 NA promoter-TSS (ENSMUSG00000001435.15) protein_coding-promoter-TSS (ENSMUSG00000001435.15) -23316 ENSMUSG00000112612.1 ENSMUSG00000112612 ENSMUST00000218871 Gm7775 processed_pseudogene Interval_133349 chr6 3552606 3553186 + 0 NA intron (ENSMUSG00000001376.17, intron 14 of 26) protein_coding-intron (ENSMUSG00000001376.17, intron 14 of 27) -30918 ENSMUSG00000107094.1 ENSMUSG00000107094 ENSMUST00000202850 Gm43294 TEC Interval_161412 chr8 120319334 120320158 + 0 NA intron (ENSMUSG00000031822.20, intron 1 of 2) protein_coding-intron (ENSMUSG00000092329.1, intron 1 of 15) -91516 ENSMUSG00000097960.1 ENSMUSG00000097960 ENSMUST00000183235 A330074K22Rik lincRNA Interval_38877 chr12 83559793 83560688 + 0 NA intron (ENSMUSG00000042628.8, intron 5 of 12) protein_coding-intron (ENSMUSG00000042628.8, intron 4 of 11) 34240 ENSMUSG00000021222.9 ENSMUSG00000021222 ENSMUST00000221944 Dcaf4 protein_coding Interval_113955 chr4 61795466 61796009 + 0 NA intron (ENSMUSG00000081207.4, intron 2 of 5) processed_transcript-intron (ENSMUSG00000081207.4, intron 2 of 5) -1745 ENSMUSG00000090090.1 ENSMUSG00000090090 ENSMUST00000120085 Mup-ps16 unprocessed_pseudogene Interval_149766 chr7 101347697 101349297 + 0 NA promoter-TSS (ENSMUSG00000110239.1) lincRNA-promoter-TSS (ENSMUSG00000110239.1) -513 ENSMUSG00000110239.1 ENSMUSG00000110239 ENSMUST00000209980 Gm45620 lincRNA Interval_117998 chr4 127641536 127641790 + 0 NA Intergenic Intergenic 166761 ENSMUSG00000087470.2 ENSMUSG00000087470 ENSMUST00000146587 A630031M04Rik lincRNA Interval_118454 chr4 131749974 131750179 + 0 NA Intergenic Intergenic -39568 ENSMUSG00000086856.1 ENSMUSG00000086856 ENSMUST00000152128 Gm16080 lincRNA Interval_128047 chr5 110486564 110488492 + 0 NA Intergenic Intergenic -5327 ENSMUSG00000105603.1 ENSMUSG00000105603 ENSMUST00000199828 Gm32996 processed_pseudogene Interval_46827 chr13 71736004 71737328 + 0 NA intron (ENSMUSG00000114038.1, intron 4 of 7) processed_transcript-intron (ENSMUSG00000114038.1, intron 4 of 7) 49229 ENSMUSG00000114038.1 ENSMUSG00000114038 ENSMUST00000223183 Gm40999 processed_transcript Interval_146047 chr7 43475626 43476749 + 0 NA intron (ENSMUSG00000013367.5, intron 2 of 3) protein_coding-intron (ENSMUSG00000013367.5, intron 6 of 7) 2046 ENSMUSG00000013367.5 ENSMUSG00000013367 ENSMUST00000206336 Iglon5 protein_coding Interval_20980 chr10 122985266 122986590 + 0 NA promoter-TSS (ENSMUSG00000065406.3) miRNA-promoter-TSS (ENSMUSG00000065406.3) -97 ENSMUSG00000112237.1 ENSMUSG00000112237 ENSMUST00000218534 D630033A02Rik transcribed_processed_pseudogene Interval_163659 chr9 23448237 23448427 + 0 NA intron (ENSMUSG00000031963.8, intron 13 of 14) protein_coding-intron (ENSMUSG00000031963.8, intron 13 of 14) 225046 ENSMUSG00000031963.8 ENSMUSG00000031963 ENSMUST00000214050 Bmper protein_coding Interval_1319 chr1 20513584 20514128 + 0 NA intron (ENSMUSG00000043760.16, intron 33 of 66) protein_coding-intron (ENSMUSG00000043760.16, intron 33 of 66) -68944 ENSMUSG00000070175.1 ENSMUSG00000070175 ENSMUST00000093665 Gm24162 snRNA Interval_168305 chr9 78543457 78543863 + 0 NA intron (ENSMUSG00000049624.14, intron 9 of 10) protein_coding-intron (ENSMUSG00000049624.14, intron 9 of 10) 23114 ENSMUSG00000111417.1 ENSMUSG00000111417 ENSMUST00000214586 Gm47430 lincRNA Interval_21658 chr11 3508516 3509327 + 0 NA Intergenic Intergenic -4122 ENSMUSG00000034570.12 ENSMUSG00000034570 ENSMUST00000183684 Inpp5j protein_coding Interval_157999 chr8 77773204 77773506 + 0 NA Intergenic Intergenic -34180 ENSMUSG00000087761.1 ENSMUSG00000087761 ENSMUST00000157136 Gm23981 snRNA Interval_35607 chr12 25355378 25355644 + 0 NA intron (ENSMUSG00000113669.1, intron 2 of 3) lincRNA-intron (ENSMUSG00000113669.1, intron 1 of 2) 37326 ENSMUSG00000113669.1 ENSMUSG00000113669 ENSMUST00000221270 Gm36723 lincRNA Interval_8957 chr1 152724409 152724679 + 0 NA intron (ENSMUSG00000026482.13, intron 1 of 18) protein_coding-intron (ENSMUSG00000026482.13, intron 1 of 17) 6015 ENSMUSG00000080950.1 ENSMUSG00000080950 ENSMUST00000119836 Gm7278 processed_pseudogene Interval_146884 chr7 54767352 54769138 + 0 NA Intergenic Intergenic -67253 ENSMUSG00000063297.7 ENSMUSG00000063297 ENSMUST00000082373 Luzp2 protein_coding Interval_27983 chr11 71887770 71887992 + 0 NA Intergenic Intergenic -39675 ENSMUSG00000077456.1 ENSMUSG00000077456 ENSMUST00000104268 Gm22927 snoRNA Interval_170205 chr9 106191232 106193649 + 0 NA Intergenic Intergenic 5358 ENSMUSG00000020253.15 ENSMUSG00000020253 ENSMUST00000152359 Ppm1m protein_coding Interval_167808 chr9 72810683 72811156 + 0 NA intron (ENSMUSG00000036030.9, intron 2 of 19) protein_coding-intron (ENSMUSG00000036030.9, intron 2 of 19) 16644 ENSMUSG00000098471.1 ENSMUSG00000098471 ENSMUST00000183677 Gm27203 processed_pseudogene Interval_90037 chr2 27453304 27453498 + 0 NA exon (ENSMUSG00000026918.16, exon 9 of 13) protein_coding-exon (ENSMUSG00000026918.16, exon 9 of 13) -2771 ENSMUSG00000098812.1 ENSMUSG00000098812 ENSMUST00000183455 Mir7578 miRNA Interval_28065 chr11 72586152 72587348 + 0 NA Intergenic Intergenic -13420 ENSMUSG00000081675.1 ENSMUSG00000081675 ENSMUST00000120676 Gm12712 processed_pseudogene Interval_139947 chr6 112969429 112969728 + 0 NA Intergenic Intergenic -6635 ENSMUSG00000094189.1 ENSMUSG00000094189 ENSMUST00000117265 Gm6134 processed_pseudogene Interval_133310 chr5 151431796 151432839 + 0 NA TTS (ENSMUSG00000097321.5) processed_transcript-TTS (ENSMUSG00000097321.5) -4107 ENSMUSG00000054622.4 ENSMUSG00000054622 ENSMUST00000067770 D730045B01Rik lincRNA Interval_114151 chr4 65124477 65126289 + 0 NA intron (ENSMUSG00000028370.7, intron 1 of 21) protein_coding-intron (ENSMUSG00000028370.7, intron 1 of 21) 1209 ENSMUSG00000028370.7 ENSMUSG00000028370 ENSMUST00000084501 Pappa protein_coding Interval_117814 chr4 126378063 126378329 + 0 NA intron (ENSMUSG00000028842.15, intron 2 of 3) protein_coding-intron (ENSMUSG00000028842.15, intron 5 of 18) 26139 ENSMUSG00000028842.15 ENSMUSG00000028842 ENSMUST00000123233 Ago3 protein_coding Interval_13562 chr10 19708272 19709302 + 0 NA Intergenic Intergenic -3847 ENSMUSG00000020007.4 ENSMUSG00000020007 ENSMUST00000217389 Il20ra protein_coding Interval_33203 chr11 115205268 115206030 + 0 NA intron (ENSMUSG00000045980.13, intron 8 of 8) protein_coding-intron (ENSMUSG00000045980.13, intron 8 of 9) 18098 ENSMUSG00000045980.13 ENSMUSG00000045980 ENSMUST00000156230 Tmem104 protein_coding Interval_125724 chr5 73600486 73601097 + 0 NA Intergenic Intergenic 29521 ENSMUSG00000067206.3 ENSMUSG00000067206 ENSMUST00000152215 Lrrc66 protein_coding Interval_90291 chr2 29597274 29597757 + 0 NA Intergenic Intergenic -46300 ENSMUSG00000039844.20 ENSMUSG00000039844 ENSMUST00000123953 Rapgef1 protein_coding Interval_25004 chr11 42927323 42927614 + 0 NA Intergenic Intergenic 29973 ENSMUSG00000084627.1 ENSMUSG00000084627 ENSMUST00000122678 Gm25543 misc_RNA Interval_139935 chr6 112900489 112900836 + 0 NA intron (ENSMUSG00000030257.16, intron 1 of 21) protein_coding-intron (ENSMUSG00000030257.16, intron 1 of 9) -46375 ENSMUSG00000108103.1 ENSMUSG00000108103 ENSMUST00000204406 Gm44081 lincRNA Interval_48095 chr13 95973000 95974186 + 0 NA intron (ENSMUSG00000051111.16, intron 5 of 5) protein_coding-intron (ENSMUSG00000051111.16, intron 12 of 12) 16633 ENSMUSG00000051111.16 ENSMUSG00000051111 ENSMUST00000220740 Sv2c protein_coding Interval_49895 chr13 117968656 117968886 + 0 NA intron (ENSMUSG00000021730.8, intron 6 of 7) protein_coding-intron (ENSMUSG00000021730.8, intron 6 of 7) -67843 ENSMUSG00000088155.1 ENSMUSG00000088155 ENSMUST00000157530 Gm26349 snoRNA Interval_70637 chr17 12644827 12645066 + 0 NA Intergenic Intergenic 30750 ENSMUSG00000023829.9 ENSMUSG00000023829 ENSMUST00000233601 Slc22a1 protein_coding Interval_91489 chr2 39373089 39373752 + 0 NA Intergenic Intergenic -21993 ENSMUSG00000083401.1 ENSMUSG00000083401 ENSMUST00000120391 Gm13506 unprocessed_pseudogene Interval_156669 chr8 56622834 56624493 + 0 NA Intergenic Intergenic 35743 ENSMUSG00000038206.13 ENSMUSG00000038206 ENSMUST00000211294 Fbxo8 protein_coding Interval_168965 chr9 89813749 89814277 + 0 NA Intergenic Intergenic 11143 ENSMUSG00000098727.1 ENSMUSG00000098727 ENSMUST00000184823 1700017I07Rik lincRNA Interval_6086 chr1 96614174 96614423 + 0 NA intron (ENSMUSG00000100589.1, intron 2 of 2) lincRNA-intron (ENSMUSG00000100589.1, intron 2 of 2) -2801 ENSMUSG00000095610.1 ENSMUSG00000095610 ENSMUST00000178491 Gm26245 snRNA Interval_169485 chr9 98244001 98244402 + 0 NA Intergenic Intergenic -52403 ENSMUSG00000032456.13 ENSMUSG00000032456 ENSMUST00000112937 Nmnat3 protein_coding Interval_121044 chr4 152398374 152398706 + 0 NA intron (ENSMUSG00000028931.12, intron 8 of 13) protein_coding-intron (ENSMUSG00000028931.12, intron 9 of 14) -12260 ENSMUSG00000090057.1 ENSMUSG00000090057 ENSMUST00000161416 Gm16333 antisense Interval_74917 chr17 57279072 57279433 + 0 NA exon (ENSMUSG00000034116.17, exon 1 of 27) protein_coding-exon (ENSMUSG00000034116.17, exon 1 of 27) -11330 ENSMUSG00000118457.1 ENSMUSG00000118457 ENSMUST00000238696 Gm46575 unitary_pseudogene Interval_155730 chr8 36558267 36559907 + 0 NA Intergenic Intergenic 69896 ENSMUSG00000039620.17 ENSMUSG00000039620 ENSMUST00000125492 Trmt9b protein_coding Interval_132728 chr5 147423472 147424235 + 0 NA TTS (ENSMUSG00000106820.1) lincRNA-TTS (ENSMUSG00000106820.1) -3885 ENSMUSG00000107336.1 ENSMUSG00000107336 ENSMUST00000202351 Gm43461 TEC Interval_120244 chr4 144823619 144825697 + 0 NA Intergenic Intergenic 32821 ENSMUSG00000083998.1 ENSMUSG00000083998 ENSMUST00000117259 Prdx2-ps2 processed_pseudogene Interval_173593 chrX 100493623 100494864 + 0 NA promoter-TSS (ENSMUSG00000031221.7) protein_coding-promoter-TSS (ENSMUSG00000031221.7) -112 ENSMUSG00000031221.7 ENSMUSG00000031221 ENSMUST00000144881 Igbp1 protein_coding Interval_56544 chr14 120245019 120245507 + 0 NA Intergenic Intergenic -103634 ENSMUSG00000115146.1 ENSMUSG00000115146 ENSMUST00000226598 Gm4681 lincRNA Interval_46072 chr13 60760634 60761615 + 0 NA TTS (ENSMUSG00000021559.14) protein_coding-TTS (ENSMUSG00000021559.14) -10551 ENSMUSG00000096874.2 ENSMUSG00000096874 ENSMUST00000078515 Gm10312 processed_pseudogene Interval_36149 chr12 36389791 36390700 + 0 NA intron (ENSMUSG00000043153.6, intron 1 of 4) protein_coding-intron (ENSMUSG00000043153.6, intron 1 of 9) -8064 ENSMUSG00000091007.1 ENSMUSG00000091007 ENSMUST00000171007 D630036H23Rik lincRNA Interval_134031 chr6 17872016 17872221 + 0 NA intron (ENSMUSG00000029534.17, intron 6 of 7) protein_coding-intron (ENSMUSG00000029534.17, intron 8 of 14) 31562 ENSMUSG00000029534.17 ENSMUSG00000029534 ENSMUST00000127322 St7 protein_coding Interval_76040 chr17 74526768 74529132 + 0 NA promoter-TSS (ENSMUSG00000024073.16) protein_coding-promoter-TSS (ENSMUSG00000024073.16) -306 ENSMUSG00000117358.1 ENSMUSG00000117358 ENSMUST00000234285 Gm31645 processed_transcript Interval_174772 chrX 166453371 166453786 + 0 NA TTS (ENSMUSG00000079317.10) protein_coding-TTS (ENSMUSG00000079317.10) 12802 ENSMUSG00000079317.10 ENSMUSG00000079317 ENSMUST00000112194 Trappc2 protein_coding Interval_64580 chr16 13464079 13465111 + 0 NA promoter-TSS (ENSMUSG00000109857.1) processed_transcript-promoter-TSS (ENSMUSG00000109857.1) -201 ENSMUSG00000109857.1 ENSMUSG00000109857 ENSMUST00000210938 Gm32817 processed_transcript Interval_2819 chr1 45850304 45850507 + 0 NA Intergenic Intergenic 7349 ENSMUSG00000084817.3 ENSMUSG00000084817 ENSMUST00000153604 Gm5526 processed_pseudogene Interval_32802 chr11 110795280 110796285 + 0 NA Intergenic Intergenic -172251 ENSMUSG00000051497.15 ENSMUSG00000051497 ENSMUST00000178798 Kcnj16 protein_coding Interval_101761 chr3 9454822 9455589 + 0 NA intron (ENSMUSG00000040209.12, intron 3 of 9) protein_coding-intron (ENSMUSG00000040209.12, intron 4 of 8) -40963 ENSMUSG00000103485.1 ENSMUSG00000103485 ENSMUST00000192900 Gm38001 TEC Interval_97589 chr2 140185497 140186547 + 0 NA intron (ENSMUSG00000027384.6, intron 5 of 10) protein_coding-intron (ENSMUSG00000027384.6, intron 5 of 10) 14992 ENSMUSG00000027384.6 ENSMUSG00000027384 ENSMUST00000125913 Ndufaf5 protein_coding Interval_43651 chr13 34506084 34506449 + 0 NA intron (ENSMUSG00000113998.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000113998.1, intron 1 of 1) 245 ENSMUSG00000113998.1 ENSMUSG00000113998 ENSMUST00000223275 Gm40909 lincRNA Interval_27303 chr11 65780003 65780262 + 0 NA intron (ENSMUSG00000033352.11, intron 1 of 5) protein_coding-intron (ENSMUSG00000033352.11, intron 1 of 10) 8154 ENSMUSG00000033352.11 ENSMUSG00000033352 ENSMUST00000138093 Map2k4 protein_coding Interval_23980 chr11 29159670 29159849 + 0 NA intron (ENSMUSG00000020464.15, intron 25 of 26) protein_coding-intron (ENSMUSG00000020464.15, intron 26 of 27) 13799 ENSMUSG00000086725.1 ENSMUSG00000086725 ENSMUST00000129876 A630052C17Rik processed_transcript Interval_152684 chr7 136239544 136241925 + 0 NA Intergenic Intergenic -27590 ENSMUSG00000110027.1 ENSMUSG00000110027 ENSMUST00000210209 C030029H02Rik lincRNA Interval_41381 chr12 113185344 113186258 + 0 NA promoter-TSS (ENSMUSG00000049036.7) protein_coding-promoter-TSS (ENSMUSG00000049036.7) -129 ENSMUSG00000049036.7 ENSMUSG00000049036 ENSMUST00000058491 Tmem121 protein_coding Interval_61884 chr15 84925078 84925780 + 0 NA intron (ENSMUSG00000016619.10, intron 2 of 8) protein_coding-intron (ENSMUSG00000016619.10, intron 1 of 7) 1980 ENSMUSG00000016619.10 ENSMUSG00000016619 ENSMUST00000230411 Nup50 protein_coding Interval_120574 chr4 149457222 149457429 + 0 NA promoter-TSS (ENSMUSG00000070572.7) processed_pseudogene-promoter-TSS (ENSMUSG00000070572.7) -4 ENSMUSG00000070572.7 ENSMUSG00000070572 ENSMUST00000117987 Trmt112-ps2 processed_pseudogene Interval_30671 chr11 95796343 95797208 + 0 NA intron (ENSMUSG00000075595.9, intron 5 of 6) protein_coding-intron (ENSMUSG00000075595.9, intron 5 of 6) -33988 ENSMUSG00000050860.6 ENSMUSG00000050860 ENSMUST00000176538 Phospho1 protein_coding Interval_141337 chr6 127379728 127379946 + 0 NA Intergenic Intergenic -11358 ENSMUSG00000107243.1 ENSMUSG00000107243 ENSMUST00000202011 Gm43631 processed_pseudogene Interval_154806 chr8 23531680 23532259 + 0 NA Intergenic Intergenic 120467 ENSMUSG00000031548.7 ENSMUSG00000031548 ENSMUST00000033952 Sfrp1 protein_coding Interval_84779 chr19 16591511 16592071 + 0 NA intron (ENSMUSG00000024697.4, intron 2 of 6) protein_coding-intron (ENSMUSG00000024697.4, intron 2 of 6) -19323 ENSMUSG00000118023.1 ENSMUSG00000118023 ENSMUST00000237942 Gm50363 processed_pseudogene Interval_25912 chr11 52511233 52512475 + 0 NA Intergenic Intergenic -24544 ENSMUSG00000083129.1 ENSMUSG00000083129 ENSMUST00000118245 Gm12210 processed_pseudogene Interval_69685 chr16 95544913 95546008 + 0 NA intron (ENSMUSG00000040732.20, intron 1 of 10) protein_coding-intron (ENSMUSG00000040732.20, intron 1 of 10) -15095 ENSMUSG00000040732.20 ENSMUSG00000040732 ENSMUST00000121809 Erg protein_coding Interval_46701 chr13 69487688 69488255 + 0 NA Intergenic Intergenic -26029 ENSMUSG00000113486.1 ENSMUSG00000113486 ENSMUST00000221578 Gm48676 processed_pseudogene Interval_83647 chr19 3455075 3455270 + 0 NA exon (ENSMUSG00000024908.15, exon 23 of 23) protein_coding-exon (ENSMUSG00000024908.15, exon 23 of 23) -30918 ENSMUSG00000114315.1 ENSMUSG00000114315 ENSMUST00000224419 Gm48696 antisense Interval_87235 chr19 47104960 47105259 + 0 NA TTS (ENSMUSG00000033033.10) protein_coding-TTS (ENSMUSG00000033033.10) -14475 ENSMUSG00000071528.4 ENSMUSG00000071528 ENSMUST00000236170 Atp5md protein_coding Interval_16430 chr10 62843733 62844308 + 0 NA intron (ENSMUSG00000047146.17, intron 3 of 12) protein_coding-intron (ENSMUSG00000047146.17, intron 2 of 10) 15974 ENSMUSG00000112309.1 ENSMUSG00000112309 ENSMUST00000220243 Gm48353 TEC Interval_3603 chr1 59940094 59940507 + 0 NA intron (ENSMUSG00000041040.12, intron 1 of 7) protein_coding-intron (ENSMUSG00000041040.12, intron 1 of 7) 10612 ENSMUSG00000103696.1 ENSMUSG00000103696 ENSMUST00000191628 Gm37531 TEC Interval_46853 chr13 72536554 72536759 + 0 NA Intergenic Intergenic -64087 ENSMUSG00000113858.1 ENSMUSG00000113858 ENSMUST00000221407 Gm4057 processed_pseudogene Interval_171839 chr9 121669261 121670005 + 0 NA TTS (ENSMUSG00000032528.5) protein_coding-TTS (ENSMUSG00000032528.5) 23409 ENSMUSG00000061536.13 ENSMUSG00000061536 ENSMUST00000214595 Sec22c protein_coding Interval_8783 chr1 151055505 151056070 + 0 NA Intergenic Intergenic 6323 ENSMUSG00000096851.1 ENSMUSG00000096851 ENSMUST00000180118 Gm22756 snRNA Interval_75294 chr17 65740157 65740636 + 0 NA intron (ENSMUSG00000056515.9, intron 1 of 2) protein_coding-intron (ENSMUSG00000056515.9, intron 1 of 6) 32244 ENSMUSG00000056515.9 ENSMUSG00000056515 ENSMUST00000233258 Rab31 protein_coding Interval_26281 chr11 55681768 55683031 + 0 NA Intergenic Intergenic -74666 ENSMUSG00000000263.15 ENSMUSG00000000263 ENSMUST00000102716 Glra1 protein_coding Interval_92852 chr2 66651566 66651821 + 0 NA Intergenic Intergenic -17040 ENSMUSG00000075316.11 ENSMUSG00000075316 ENSMUST00000141603 Scn9a protein_coding Interval_22456 chr11 10390737 10390927 + 0 NA Intergenic Intergenic -13750 ENSMUSG00000084045.1 ENSMUSG00000084045 ENSMUST00000118697 Gm11997 processed_pseudogene Interval_19270 chr10 95917646 95918766 + 0 NA Intergenic Intergenic 19603 ENSMUSG00000077268.1 ENSMUSG00000077268 ENSMUST00000104080 Gm24433 snoRNA Interval_131900 chr5 140684486 140684999 + 0 NA exon (ENSMUSG00000036555.14, exon 10 of 10) protein_coding-exon (ENSMUSG00000036555.14, exon 10 of 10) 17534 ENSMUSG00000036555.14 ENSMUSG00000036555 ENSMUST00000139382 Iqce protein_coding Interval_147458 chr7 67460097 67460446 + 0 NA Intergenic Intergenic -16338 ENSMUSG00000109329.1 ENSMUSG00000109329 ENSMUST00000208755 Gm33926 lincRNA Interval_71131 chr17 19258796 19259399 + 0 NA intron (ENSMUSG00000116587.1, intron 1 of 3) lincRNA-intron (ENSMUSG00000116587.1, intron 1 of 3) 1167 ENSMUSG00000116587.1 ENSMUSG00000116587 ENSMUST00000232641 Gm49753 lincRNA Interval_170 JH584304.1 87921 88392 + 0 NA NA NA NA NA Interval_141955 chr6 135875741 135876912 + 0 NA intron (ENSMUSG00000086614.2, intron 1 of 3) protein_coding-intron (ENSMUSG00000030209.14, intron 4 of 13) 821 ENSMUSG00000086614.2 ENSMUSG00000086614 ENSMUST00000155455 Gm14330 antisense Interval_113038 chr4 47139360 47139915 + 0 NA Intergenic Intergenic -32032 ENSMUSG00000083491.1 ENSMUSG00000083491 ENSMUST00000118334 Gm12423 processed_pseudogene Interval_18415 chr10 85636341 85636770 + 0 NA intron (ENSMUSG00000020042.15, intron 4 of 4) protein_coding-intron (ENSMUSG00000020042.15, intron 9 of 9) -8648 ENSMUSG00000020042.15 ENSMUSG00000020042 ENSMUST00000145433 Btbd11 protein_coding Interval_12989 chr10 8906531 8906850 + 0 NA intron (ENSMUSG00000111731.1, intron 1 of 3) lincRNA-intron (ENSMUSG00000111731.1, intron 1 of 3) 2709 ENSMUSG00000111731.1 ENSMUSG00000111731 ENSMUST00000215873 Gm48727 lincRNA Interval_134091 chr6 19456388 19456947 + 0 NA Intergenic Intergenic -98675 ENSMUSG00000099149.1 ENSMUSG00000099149 ENSMUST00000183510 Mir6370 miRNA Interval_38990 chr12 84329543 84329896 + 0 NA intron (ENSMUSG00000042472.11, intron 1 of 4) protein_coding-intron (ENSMUSG00000042472.11, intron 5 of 11) 12601 ENSMUSG00000042472.11 ENSMUSG00000042472 ENSMUST00000220832 Zfp410 protein_coding Interval_126981 chr5 98953322 98953843 + 0 NA intron (ENSMUSG00000029334.14, intron 14 of 18) protein_coding-intron (ENSMUSG00000029334.14, intron 14 of 18) -9750 ENSMUSG00000029334.14 ENSMUSG00000029334 ENSMUST00000160765 Prkg2 protein_coding Interval_57029 chr15 4671966 4673295 + 0 NA Intergenic Intergenic -93315 ENSMUSG00000022181.16 ENSMUSG00000022181 ENSMUST00000162729 C6 protein_coding Interval_122694 chr5 24704532 24704750 + 0 NA promoter-TSS (ENSMUSG00000097275.1) antisense-promoter-TSS (ENSMUSG00000097275.1) 49 ENSMUSG00000097275.1 ENSMUSG00000097275 ENSMUST00000181925 Gm26648 antisense Interval_75631 chr17 69498125 69498464 + 0 NA Intergenic Intergenic -22419 ENSMUSG00000117053.1 ENSMUSG00000117053 ENSMUST00000232967 A730049N16Rik antisense Interval_117607 chr4 124989825 124990492 + 0 NA intron (ENSMUSG00000028871.7, intron 1 of 5) protein_coding-intron (ENSMUSG00000028871.7, intron 1 of 5) -3149 ENSMUSG00000087011.1 ENSMUSG00000087011 ENSMUST00000146679 Gm12930 antisense Interval_65770 chr16 28511152 28511648 + 0 NA intron (ENSMUSG00000022523.10, intron 1 of 4) protein_coding-intron (ENSMUSG00000022523.10, intron 1 of 3) 88643 ENSMUSG00000076064.1 ENSMUSG00000076064 ENSMUST00000102110 Mir690 miRNA Interval_8761 chr1 150591107 150591856 + 0 NA intron (ENSMUSG00000066842.18, intron 97 of 105) protein_coding-intron (ENSMUSG00000066842.18, intron 97 of 106) -8269 ENSMUSG00000066842.18 ENSMUSG00000066842 ENSMUST00000155715 Hmcn1 protein_coding Interval_106175 chr3 94351635 94352357 + 0 NA Intergenic Intergenic 8846 ENSMUSG00000105708.1 ENSMUSG00000105708 ENSMUST00000196531 Gm36070 processed_transcript Interval_27369 chr11 67020665 67021208 + 0 NA Intergenic Intergenic -4218 ENSMUSG00000050270.12 ENSMUSG00000050270 ENSMUST00000061786 Tmem220 protein_coding Interval_165234 chr9 45608343 45608550 + 0 NA intron (ENSMUSG00000032087.11, intron 3 of 32) protein_coding-intron (ENSMUSG00000032087.11, intron 3 of 32) 26366 ENSMUSG00000096202.1 ENSMUSG00000096202 ENSMUST00000179911 Gm22069 snRNA Interval_7787 chr1 133678298 133678606 + 0 NA TTS (ENSMUSG00000051998.14) protein_coding-TTS (ENSMUSG00000051998.14) 11634 ENSMUSG00000051998.14 ENSMUSG00000051998 ENSMUST00000189524 Lax1 protein_coding Interval_159800 chr8 103778744 103779257 + 0 NA Intergenic Intergenic 175201 ENSMUSG00000110336.1 ENSMUSG00000110336 ENSMUST00000211119 4933400L20Rik lincRNA Interval_99114 chr2 157292262 157292570 + 0 NA intron (ENSMUSG00000027642.15, intron 4 of 16) protein_coding-intron (ENSMUSG00000027642.15, intron 3 of 16) 10473 ENSMUSG00000027642.15 ENSMUSG00000027642 ENSMUST00000149924 Rpn2 protein_coding Interval_172065 chr9 124487548 124489600 + 0 NA Intergenic Intergenic 5219 ENSMUSG00000096734.1 ENSMUSG00000096734 ENSMUST00000178787 Gm21836 protein_coding Interval_166374 chr9 58732342 58732678 + 0 NA intron (ENSMUSG00000074269.10, intron 1 of 2) protein_coding-intron (ENSMUSG00000074269.10, intron 1 of 5) -36499 ENSMUSG00000093473.1 ENSMUSG00000093473 ENSMUST00000177528 Gm20620 processed_pseudogene Interval_45584 chr13 56072026 56072882 + 0 NA intron (ENSMUSG00000114493.2, intron 5 of 5) antisense-intron (ENSMUSG00000114493.2, intron 2 of 2) -42220 ENSMUSG00000114229.1 ENSMUSG00000114229 ENSMUST00000225745 Gm47072 processed_pseudogene Interval_129406 chr5 119777785 119778749 + 0 NA Intergenic Intergenic 29602 ENSMUSG00000107053.1 ENSMUSG00000107053 ENSMUST00000202127 1700021F13Rik lincRNA Interval_75340 chr17 65967832 65968046 + 0 NA TTS (ENSMUSG00000034647.15) protein_coding-TTS (ENSMUSG00000034647.15) 8176 ENSMUSG00000034647.15 ENSMUSG00000034647 ENSMUST00000124297 Ankrd12 protein_coding Interval_79285 chr18 30006595 30007119 + 0 NA Intergenic Intergenic -260392 ENSMUSG00000117465.1 ENSMUSG00000117465 ENSMUST00000234467 Gm49980 lincRNA Interval_56371 chr14 118180011 118181860 + 0 NA Intergenic Intergenic -31363 ENSMUSG00000115774.1 ENSMUSG00000115774 ENSMUST00000227956 4933431J24Rik lincRNA Interval_6927 chr1 120771248 120771474 + 0 NA Intergenic Intergenic 12918 ENSMUSG00000101386.1 ENSMUSG00000101386 ENSMUST00000188147 Gm29346 lincRNA Interval_172332 chrX 13078679 13079167 + 0 NA intron (ENSMUSG00000031010.17, intron 2 of 16) protein_coding-intron (ENSMUSG00000031010.17, intron 1 of 44) 36872 ENSMUSG00000087424.1 ENSMUSG00000087424 ENSMUST00000130099 5730405O15Rik processed_transcript Interval_108173 chr3 122145188 122146158 + 0 NA intron (ENSMUSG00000028125.14, intron 9 of 26) protein_coding-intron (ENSMUSG00000028125.14, intron 32 of 49) 6946 ENSMUSG00000105351.1 ENSMUSG00000105351 ENSMUST00000198223 Gm43157 processed_pseudogene Interval_105159 chr3 82998975 82999236 + 0 NA intron (ENSMUSG00000102595.1, intron 1 of 3) lincRNA-intron (ENSMUSG00000102595.1, intron 1 of 3) -3520 ENSMUSG00000102595.1 ENSMUSG00000102595 ENSMUST00000194580 Gm30097 lincRNA Interval_49544 chr13 112834938 112835641 + 0 NA intron (ENSMUSG00000021759.14, intron 2 of 5) protein_coding-intron (ENSMUSG00000021759.14, intron 2 of 5) 34426 ENSMUSG00000021759.14 ENSMUSG00000021759 ENSMUST00000070951 Plpp1 protein_coding Interval_67400 chr16 48328265 48328822 + 0 NA Intergenic Intergenic 24635 ENSMUSG00000072419.5 ENSMUSG00000072419 ENSMUST00000097175 Dppa2 protein_coding Interval_143258 chr7 4805725 4807345 + 0 NA TTS (ENSMUSG00000060860.8) protein_coding-TTS (ENSMUSG00000060860.8) 5371 ENSMUSG00000060860.8 ENSMUSG00000060860 ENSMUST00000206669 Ube2s protein_coding Interval_174819 chrX 167381629 167383082 + 0 NA intron (ENSMUSG00000025742.5, intron 1 of 2) protein_coding-intron (ENSMUSG00000025742.5, intron 1 of 6) 355 ENSMUSG00000025742.5 ENSMUSG00000025742 ENSMUST00000145456 Prps2 protein_coding Interval_4054 chr1 66911522 66913028 + 0 NA Intergenic Intergenic 22423 ENSMUSG00000061816.15 ENSMUSG00000061816 ENSMUST00000151328 Myl1 protein_coding Interval_43657 chr13 34636048 34636265 + 0 NA intron (ENSMUSG00000021411.16, intron 3 of 4) protein_coding-intron (ENSMUSG00000021411.16, intron 4 of 5) 12412 ENSMUSG00000021411.16 ENSMUSG00000021411 ENSMUST00000152392 Pxdc1 protein_coding Interval_174805 chrX 167067747 167068406 + 0 NA intron (ENSMUSG00000086008.8, intron 1 of 2) lincRNA-intron (ENSMUSG00000086008.8, intron 3 of 4) 313 ENSMUSG00000086008.8 ENSMUSG00000086008 ENSMUST00000171902 Gm8817 lincRNA Interval_165696 chr9 51052410 51052627 + 0 NA Intergenic Intergenic -8404 ENSMUSG00000032056.10 ENSMUSG00000032056 ENSMUST00000213117 Btg4 protein_coding Interval_30632 chr11 95577644 95578418 + 0 NA exon (ENSMUSG00000000120.6, exon 3 of 6) protein_coding-exon (ENSMUSG00000000120.6, exon 3 of 6) 9704 ENSMUSG00000000120.6 ENSMUSG00000000120 ENSMUST00000000122 Ngfr protein_coding Interval_94829 chr2 95642839 95643219 + 0 NA Intergenic Intergenic -34688 ENSMUSG00000081757.1 ENSMUSG00000081757 ENSMUST00000118285 Gm13798 processed_pseudogene Interval_10374 chr1 170106315 170106537 + 0 NA intron (ENSMUSG00000026674.9, intron 1 of 3) protein_coding-intron (ENSMUSG00000026674.9, intron 1 of 17) 4336 ENSMUSG00000026674.9 ENSMUSG00000026674 ENSMUST00000194619 Ddr2 protein_coding Interval_162466 chr8 129144453 129145275 + 0 NA intron (ENSMUSG00000056018.14, intron 1 of 6) protein_coding-intron (ENSMUSG00000056018.14, intron 9 of 14) 748 ENSMUSG00000056018.14 ENSMUSG00000056018 ENSMUST00000189055 Ccdc7b protein_coding Interval_22232 chr11 7412354 7413352 + 0 NA Intergenic Intergenic -122479 ENSMUSG00000087637.1 ENSMUSG00000087637 ENSMUST00000149481 Gm11986 lincRNA Interval_4462 chr1 74352746 74354112 + 0 NA exon (ENSMUSG00000026179.14, exon 10 of 10) protein_coding-exon (ENSMUSG00000026179.14, exon 10 of 10) -9013 ENSMUSG00000073650.8 ENSMUSG00000073650 ENSMUST00000186688 Catip protein_coding Interval_76691 chr17 83521991 83522976 + 0 NA Intergenic Intergenic -17977 ENSMUSG00000024248.14 ENSMUSG00000024248 ENSMUST00000234258 Cox7a2l protein_coding Interval_105849 chr3 89696596 89697427 + 0 NA Intergenic Intergenic -18011 ENSMUSG00000027951.16 ENSMUSG00000027951 ENSMUST00000131030 Adar protein_coding Interval_86390 chr19 40177301 40177883 + 0 NA intron (ENSMUSG00000060613.10, intron 1 of 2) protein_coding-intron (ENSMUSG00000060613.10, intron 3 of 8) 9694 ENSMUSG00000060613.10 ENSMUSG00000060613 ENSMUST00000164351 Cyp2c70 protein_coding Interval_61871 chr15 84803642 84804115 + 0 NA promoter-TSS (ENSMUSG00000016624.15) protein_coding-promoter-TSS (ENSMUSG00000016624.15) -16429 ENSMUSG00000016624.15 ENSMUSG00000016624 ENSMUST00000160389 Phf21b protein_coding Interval_110163 chr3 153897372 153898120 + 0 NA intron (ENSMUSG00000005493.15, intron 3 of 20) protein_coding-intron (ENSMUSG00000005493.15, intron 2 of 19) 12887 ENSMUSG00000064731.1 ENSMUSG00000064731 ENSMUST00000082797 Snord45b snoRNA Interval_96121 chr2 119904685 119905376 + 0 NA intron (ENSMUSG00000033943.15, intron 2 of 20) protein_coding-intron (ENSMUSG00000033943.15, intron 2 of 24) 7725 ENSMUSG00000033943.15 ENSMUSG00000033943 ENSMUST00000131396 Mga protein_coding Interval_128244 chr5 111993066 111994393 + 0 NA Intergenic Intergenic -49494 ENSMUSG00000106060.1 ENSMUSG00000106060 ENSMUST00000197648 Gm42488 lincRNA Interval_20240 chr10 116370898 116371978 + 0 NA intron (ENSMUSG00000020154.10, intron 31 of 33) protein_coding-intron (ENSMUSG00000020154.10, intron 29 of 31) 30855 ENSMUSG00000065086.1 ENSMUSG00000065086 ENSMUST00000083152 Gm26495 snoRNA Interval_115718 chr4 102981355 102982527 + 0 NA intron (ENSMUSG00000028523.14, intron 2 of 4) antisense-intron (ENSMUSG00000085181.1, intron 2 of 3) 3250 ENSMUSG00000028523.14 ENSMUSG00000028523 ENSMUST00000139883 Tctex1d1 protein_coding Interval_66843 chr16 38040417 38040738 + 0 NA Intergenic Intergenic 60490 ENSMUSG00000065188.1 ENSMUSG00000065188 ENSMUST00000083254 Gm25140 snRNA Interval_100172 chr2 167455364 167455566 + 0 NA intron (ENSMUSG00000039463.14, intron 5 of 6) protein_coding-intron (ENSMUSG00000039463.14, intron 8 of 16) 4410 ENSMUSG00000039463.14 ENSMUSG00000039463 ENSMUST00000148454 Slc9a8 protein_coding Interval_150018 chr7 104949986 104950476 + 0 NA promoter-TSS (ENSMUSG00000094685.2) processed_pseudogene-promoter-TSS (ENSMUSG00000094685.2) 58 ENSMUSG00000094685.2 ENSMUSG00000094685 ENSMUST00000179862 Gm5900 processed_pseudogene Interval_87054 chr19 45830820 45831266 + 0 NA intron (ENSMUSG00000039901.10, intron 24 of 25) protein_coding-intron (ENSMUSG00000039901.10, intron 24 of 25) -12574 ENSMUSG00000117956.1 ENSMUSG00000117956 ENSMUST00000235344 Gm50196 antisense Interval_72260 chr17 28857598 28858834 + 0 NA promoter-TSS (ENSMUSG00000043286.12) protein_coding-promoter-TSS (ENSMUSG00000043286.12) -302 ENSMUSG00000043286.12 ENSMUSG00000043286 ENSMUST00000114737 Pnpla1 protein_coding Interval_54690 chr14 73359787 73361036 + 0 NA Intergenic Intergenic 8713 ENSMUSG00000022108.8 ENSMUSG00000022108 ENSMUST00000228637 Itm2b protein_coding Interval_121828 chr5 8570262 8571571 + 0 NA intron (ENSMUSG00000040570.14, intron 3 of 10) protein_coding-intron (ENSMUSG00000040570.14, intron 3 of 9) 52036 ENSMUSG00000040570.14 ENSMUSG00000040570 ENSMUST00000115378 Rundc3b protein_coding Interval_116904 chr4 118112069 118112916 + 0 NA intron (ENSMUSG00000028538.12, intron 1 of 11) protein_coding-intron (ENSMUSG00000028538.12, intron 1 of 11) 49165 ENSMUSG00000033326.15 ENSMUSG00000033326 ENSMUST00000164821 Kdm4a protein_coding Interval_157438 chr8 70373188 70375321 + 0 NA promoter-TSS (ENSMUSG00000031849.9) protein_coding-promoter-TSS (ENSMUSG00000031849.9) 383 ENSMUSG00000031849.9 ENSMUSG00000031849 ENSMUST00000212488 Comp protein_coding Interval_55382 chr14 86360318 86360882 + 0 NA Intergenic Intergenic 40315 ENSMUSG00000115089.1 ENSMUSG00000115089 ENSMUST00000226132 Gm4350 processed_pseudogene Interval_66661 chr16 35932919 35933141 + 0 NA exon (ENSMUSG00000049502.17, exon 3 of 5) protein_coding-exon (ENSMUSG00000049502.17, exon 3 of 5) 6121 ENSMUSG00000049502.17 ENSMUSG00000049502 ENSMUST00000114885 Dtx3l protein_coding Interval_130703 chr5 129886354 129887972 + 0 NA intron (ENSMUSG00000070493.3, intron 1 of 2) protein_coding-intron (ENSMUSG00000070493.3, intron 1 of 3) 110 ENSMUSG00000070493.3 ENSMUSG00000070493 ENSMUST00000131645 Chchd2 protein_coding Interval_27784 chr11 69995399 69996242 + 0 NA promoter-TSS (ENSMUSG00000018572.10) protein_coding-promoter-TSS (ENSMUSG00000018572.10) -1171 ENSMUSG00000018572.10 ENSMUSG00000018572 ENSMUST00000135814 Phf23 protein_coding Interval_75369 chr17 66181751 66182044 + 0 NA Intergenic Intergenic 6094 ENSMUSG00000117253.1 ENSMUSG00000117253 ENSMUST00000233943 Gm49930 processed_pseudogene Interval_154535 chr8 19116006 19116325 + 0 NA Intergenic Intergenic -1326 ENSMUSG00000043787.7 ENSMUSG00000043787 ENSMUST00000062113 Defb12 protein_coding Interval_44262 chr13 43181218 43181593 + 0 NA Intergenic Intergenic -21853 ENSMUSG00000021368.15 ENSMUSG00000021368 ENSMUST00000221095 Tbc1d7 protein_coding Interval_157178 chr8 67029346 67029669 + 0 NA Intergenic Intergenic 24626 ENSMUSG00000110583.1 ENSMUSG00000110583 ENSMUST00000212608 Gm7639 processed_pseudogene Interval_39653 chr12 91799052 91800335 + 0 NA Intergenic Intergenic -8019 ENSMUSG00000077096.1 ENSMUSG00000077096 ENSMUST00000103908 Gm22015 miRNA Interval_99721 chr2 164497097 164498071 + 0 NA promoter-TSS (ENSMUSG00000017721.15) protein_coding-promoter-TSS (ENSMUSG00000017721.15) 23 ENSMUSG00000017721.15 ENSMUSG00000017721 ENSMUST00000131976 Pigt protein_coding Interval_4925 chr1 82657173 82657525 + 0 NA intron (ENSMUSG00000079465.8, intron 13 of 51) protein_coding-intron (ENSMUSG00000079465.8, intron 13 of 51) 22336 ENSMUSG00000065055.1 ENSMUSG00000065055 ENSMUST00000083121 n-R5s213 rRNA Interval_51050 chr14 21802903 21803938 + 0 NA Intergenic Intergenic -9291 ENSMUSG00000065836.1 ENSMUSG00000065836 ENSMUST00000083902 Gm23502 snRNA Interval_13554 chr10 19494535 19495771 + 0 NA intron (ENSMUSG00000110902.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000110902.1, intron 2 of 3) 510 ENSMUSG00000110902.1 ENSMUSG00000110902 ENSMUST00000216664 Gm33104 lincRNA Interval_170162 chr9 105744464 105745171 + 0 NA intron (ENSMUSG00000043719.14, intron 20 of 36) protein_coding-intron (ENSMUSG00000043719.14, intron 20 of 36) 17032 ENSMUSG00000102877.1 ENSMUSG00000102877 ENSMUST00000195709 Gm38314 TEC Interval_114701 chr4 84009507 84010365 + 0 NA Intergenic Intergenic 34943 ENSMUSG00000085217.1 ENSMUSG00000085217 ENSMUST00000125884 6030471H07Rik lincRNA Interval_33624 chr11 117597958 117599640 + 0 NA Intergenic Intergenic -12448 ENSMUSG00000054418.6 ENSMUSG00000054418 ENSMUST00000155384 2900041M22Rik processed_transcript Interval_132769 chr5 147757986 147758607 + 0 NA Intergenic Intergenic 12780 ENSMUSG00000106845.1 ENSMUSG00000106845 ENSMUST00000202338 Gm43156 lincRNA Interval_68960 chr16 89709544 89709767 + 0 NA Intergenic Intergenic -75515 ENSMUSG00000116651.1 ENSMUSG00000116651 ENSMUST00000232201 Gm17844 processed_pseudogene Interval_86578 chr19 41829669 41832201 + 0 NA exon (ENSMUSG00000067199.4, exon 1 of 1) protein_coding-exon (ENSMUSG00000067199.4, exon 1 of 1) 965 ENSMUSG00000067199.4 ENSMUSG00000067199 ENSMUST00000087155 Frat1 protein_coding Interval_90708 chr2 32029584 32029935 + 0 NA intron (ENSMUSG00000001855.15, intron 2 of 3) protein_coding-intron (ENSMUSG00000001855.15, intron 26 of 35) -12415 ENSMUSG00000086192.1 ENSMUSG00000086192 ENSMUST00000141023 Gm13609 antisense Interval_122430 chr5 22549667 22550682 + 0 NA promoter-TSS (ENSMUSG00000029012.11) protein_coding-promoter-TSS (ENSMUSG00000029012.11) -3741 ENSMUSG00000097207.7 ENSMUSG00000097207 ENSMUST00000199660 6030443J06Rik lincRNA Interval_11881 chr1 186712786 186713039 + 0 NA exon (ENSMUSG00000102619.1, exon 1 of 1) TEC-exon (ENSMUSG00000102619.1, exon 1 of 1) 186 ENSMUSG00000102619.1 ENSMUSG00000102619 ENSMUST00000194722 Gm37849 TEC Interval_54593 chr14 70923991 70924324 + 0 NA intron (ENSMUSG00000022103.10, intron 3 of 8) protein_coding-intron (ENSMUSG00000022103.10, intron 3 of 8) 33629 ENSMUSG00000022103.10 ENSMUSG00000022103 ENSMUST00000227633 Gfra2 protein_coding Interval_38057 chr12 75387876 75388384 + 0 NA intron (ENSMUSG00000046768.13, intron 2 of 3) protein_coding-intron (ENSMUSG00000046768.13, intron 2 of 4) 28651 ENSMUSG00000048982.3 ENSMUSG00000048982 ENSMUST00000051079 Gphb5 protein_coding Interval_159807 chr8 103893679 103893940 + 0 NA Intergenic Intergenic -177340 ENSMUSG00000110019.1 ENSMUSG00000110019 ENSMUST00000211125 Gm8748 processed_pseudogene Interval_89749 chr2 25210651 25211719 + 0 NA promoter-TSS (ENSMUSG00000013465.19) protein_coding-promoter-TSS (ENSMUSG00000013465.19) -485 ENSMUSG00000013465.19 ENSMUSG00000013465 ENSMUST00000147890 Nelfb protein_coding Interval_57453 chr15 11107930 11108204 + 0 NA intron (ENSMUSG00000047497.10, intron 2 of 2) protein_coding-intron (ENSMUSG00000047497.10, intron 2 of 23) 43249 ENSMUSG00000047497.10 ENSMUSG00000047497 ENSMUST00000228940 Adamts12 protein_coding Interval_42593 chr13 16165203 16165599 + 0 NA Intergenic Intergenic 48363 ENSMUSG00000112962.1 ENSMUSG00000112962 ENSMUST00000220687 Gm31711 processed_pseudogene Interval_119566 chr4 138410481 138412019 + 0 NA Intergenic Intergenic -14538 ENSMUSG00000083326.4 ENSMUSG00000083326 ENSMUST00000117723 Rpl38-ps1 processed_pseudogene Interval_31920 chr11 103874911 103875102 + 0 NA intron (ENSMUSG00000034187.18, intron 9 of 20) protein_coding-intron (ENSMUSG00000034187.18, intron 9 of 20) -2684 ENSMUSG00000034187.18 ENSMUSG00000034187 ENSMUST00000149642 Nsf protein_coding Interval_100250 chr2 167961603 167961794 + 0 NA intron (ENSMUSG00000027540.13, intron 2 of 2) protein_coding-intron (ENSMUSG00000027540.13, intron 1 of 8) 29326 ENSMUSG00000027540.13 ENSMUSG00000027540 ENSMUST00000142717 Ptpn1 protein_coding Interval_151271 chr7 120588813 120589082 + 0 NA Intergenic Intergenic -4204 ENSMUSG00000109113.1 ENSMUSG00000109113 ENSMUST00000207884 Gm32916 lincRNA Interval_114620 chr4 83256494 83258510 + 0 NA intron (ENSMUSG00000038172.14, intron 5 of 6) protein_coding-intron (ENSMUSG00000038172.14, intron 6 of 15) 27667 ENSMUSG00000038172.14 ENSMUSG00000038172 ENSMUST00000148811 Ttc39b protein_coding Interval_60803 chr15 76861567 76861745 + 0 NA intron (ENSMUSG00000022526.8, intron 2 of 2) protein_coding-intron (ENSMUSG00000022526.8, intron 3 of 3) 9329 ENSMUSG00000022526.8 ENSMUSG00000022526 ENSMUST00000230524 Zfp251 protein_coding Interval_28254 chr11 74706646 74708346 + 0 NA intron (ENSMUSG00000020745.15, intron 1 of 9) protein_coding-intron (ENSMUSG00000020745.15, intron 1 of 10) 16822 ENSMUSG00000020745.15 ENSMUSG00000020745 ENSMUST00000155493 Pafah1b1 protein_coding Interval_31842 chr11 103292072 103293137 + 0 NA Intergenic Intergenic -24859 ENSMUSG00000078635.3 ENSMUSG00000078635 ENSMUST00000139621 1700028N14Rik processed_transcript Interval_110296 chr3 156141535 156142089 + 0 NA Intergenic Intergenic 80921 ENSMUSG00000105949.1 ENSMUSG00000105949 ENSMUST00000195916 Gm6510 processed_pseudogene Interval_83016 chr18 80432281 80432594 + 0 NA intron (ENSMUSG00000033323.14, intron 2 of 3) protein_coding-intron (ENSMUSG00000033323.14, intron 11 of 12) 8422 ENSMUSG00000033323.14 ENSMUSG00000033323 ENSMUST00000161003 Ctdp1 protein_coding Interval_83203 chr18 82750929 82751642 + 0 NA Intergenic Intergenic -7433 ENSMUSG00000118085.1 ENSMUSG00000118085 ENSMUST00000236831 Gm50356 lincRNA Interval_31637 chr11 101925563 101925976 + 0 NA Intergenic Intergenic -13732 ENSMUSG00000082171.1 ENSMUSG00000082171 ENSMUST00000120378 Rpl27-ps2 processed_pseudogene Interval_153351 chr7 143829546 143830546 + 0 NA promoter-TSS (ENSMUSG00000058454.15) protein_coding-promoter-TSS (ENSMUSG00000058454.15) -6605 ENSMUSG00000058454.15 ENSMUSG00000058454 ENSMUST00000145471 Dhcr7 protein_coding Interval_135846 chr6 47904152 47905825 + 0 NA exon (ENSMUSG00000025821.9, exon 8 of 8) protein_coding-exon (ENSMUSG00000025821.9, exon 8 of 8) -21318 ENSMUSG00000052763.7 ENSMUSG00000052763 ENSMUST00000156500 Zfp212 protein_coding Interval_83234 chr18 82909614 82911537 + 0 NA promoter-TSS (ENSMUSG00000058881.13) protein_coding-promoter-TSS (ENSMUSG00000058881.13) -7179 ENSMUSG00000058881.13 ENSMUSG00000058881 ENSMUST00000236468 Zfp516 protein_coding Interval_173026 chrX 65153065 65154121 + 0 NA Intergenic Intergenic 66755 ENSMUSG00000083074.1 ENSMUSG00000083074 ENSMUST00000117327 Gm14670 processed_pseudogene Interval_105134 chr3 82326671 82327057 + 0 NA Intergenic Intergenic -53209 ENSMUSG00000033900.13 ENSMUSG00000033900 ENSMUST00000195793 Map9 protein_coding Interval_36228 chr12 40009457 40009692 + 0 NA TTS (ENSMUSG00000047446.18) protein_coding-TTS (ENSMUSG00000047446.18) 27855 ENSMUSG00000047446.18 ENSMUSG00000047446 ENSMUST00000101472 Arl4a protein_coding Interval_12512 chr1 194675793 194676064 + 0 NA intron (ENSMUSG00000026640.12, intron 3 of 31) protein_coding-intron (ENSMUSG00000026640.12, intron 3 of 31) -1074 ENSMUSG00000102841.1 ENSMUSG00000102841 ENSMUST00000194586 Gm38036 TEC Interval_172789 chrX 49125053 49125485 + 0 NA intron (ENSMUSG00000031109.16, intron 2 of 4) protein_coding-intron (ENSMUSG00000031109.16, intron 3 of 15) -32954 ENSMUSG00000081320.1 ENSMUSG00000081320 ENSMUST00000120043 Gm15034 processed_pseudogene Interval_111799 chr4 29585279 29585905 + 0 NA Intergenic Intergenic 95436 ENSMUSG00000082058.1 ENSMUSG00000082058 ENSMUST00000118135 Gm11923 processed_pseudogene Interval_103901 chr3 54745585 54746817 + 0 NA TTS (ENSMUSG00000036632.9) protein_coding-TTS (ENSMUSG00000036632.9) -9381 ENSMUSG00000027796.2 ENSMUSG00000027796 ENSMUST00000029371 Smad9 protein_coding Interval_32294 chr11 106730828 106731540 + 0 NA intron (ENSMUSG00000020717.19, intron 1 of 15) protein_coding-intron (ENSMUSG00000020717.19, intron 1 of 15) -20081 ENSMUSG00000040528.15 ENSMUSG00000040528 ENSMUST00000182479 Milr1 protein_coding Interval_115235 chr4 94691825 94692069 + 0 NA intron (ENSMUSG00000028576.12, intron 19 of 19) protein_coding-intron (ENSMUSG00000028576.12, intron 19 of 19) 12767 ENSMUSG00000028576.12 ENSMUSG00000028576 ENSMUST00000152289 Ift74 protein_coding Interval_84900 chr19 18682302 18682614 + 0 NA intron (ENSMUSG00000024726.10, intron 3 of 7) protein_coding-intron (ENSMUSG00000024726.10, intron 3 of 7) 11129 ENSMUSG00000024726.10 ENSMUSG00000024726 ENSMUST00000236401 Carnmt1 protein_coding Interval_119340 chr4 136970777 136971389 + 0 NA Intergenic Intergenic -14267 ENSMUSG00000028661.8 ENSMUSG00000028661 ENSMUST00000030420 Epha8 protein_coding Interval_96202 chr2 120513858 120515721 + 0 NA intron (ENSMUSG00000027288.16, intron 14 of 18) protein_coding-intron (ENSMUSG00000027288.16, intron 17 of 21) 25071 ENSMUSG00000027288.16 ENSMUSG00000027288 ENSMUST00000147353 Zfp106 protein_coding Interval_123545 chr5 33385268 33386899 + 0 NA intron (ENSMUSG00000037355.14, intron 2 of 13) protein_coding-intron (ENSMUSG00000037355.14, intron 2 of 13) 7311 ENSMUSG00000037355.14 ENSMUSG00000037355 ENSMUST00000202816 Uvssa protein_coding Interval_139420 chr6 99989213 99989418 + 0 NA intron (ENSMUSG00000108151.1, intron 1 of 3) lincRNA-intron (ENSMUSG00000108151.1, intron 1 of 3) 1900 ENSMUSG00000108151.1 ENSMUSG00000108151 ENSMUST00000204791 Gm33201 lincRNA Interval_35106 chr12 17347812 17348955 + 0 NA promoter-TSS (ENSMUSG00000061458.9) protein_coding-promoter-TSS (ENSMUSG00000061458.9) -10 ENSMUSG00000114024.1 ENSMUSG00000114024 ENSMUST00000221894 Gm46336 bidirectional_promoter_lncRNA Interval_25241 chr11 45799872 45801011 + 0 NA Intergenic Intergenic -7646 ENSMUSG00000086686.1 ENSMUSG00000086686 ENSMUST00000137002 F630206G17Rik processed_transcript Interval_135367 chr6 38649567 38650976 + 0 NA Intergenic Intergenic -13038 ENSMUSG00000071537.6 ENSMUSG00000071537 ENSMUST00000201345 Klrg2 protein_coding Interval_133618 chr6 7696358 7696903 + 0 NA Intergenic Intergenic -3758 ENSMUSG00000029752.12 ENSMUSG00000029752 ENSMUST00000148349 Asns protein_coding Interval_55345 chr14 84171636 84171852 + 0 NA Intergenic Intergenic -44870 ENSMUSG00000115612.1 ENSMUSG00000115612 ENSMUST00000228759 Gm29800 processed_pseudogene Interval_116657 chr4 116421349 116421611 + 0 NA intron (ENSMUSG00000003810.13, intron 2 of 5) protein_coding-intron (ENSMUSG00000003810.13, intron 3 of 28) -27308 ENSMUSG00000082592.1 ENSMUSG00000082592 ENSMUST00000121683 Gm12950 processed_pseudogene Interval_167453 chr9 69468801 69469591 + 0 NA intron (ENSMUSG00000032231.14, intron 3 of 6) protein_coding-intron (ENSMUSG00000032231.14, intron 3 of 12) 10402 ENSMUSG00000086399.1 ENSMUSG00000086399 ENSMUST00000131093 Gm16144 antisense Interval_162985 chr9 14192886 14193224 + 0 NA Intergenic Intergenic -11028 ENSMUSG00000111803.1 ENSMUSG00000111803 ENSMUST00000216569 Gm47564 lincRNA Interval_161104 chr8 117475086 117475476 + 0 NA Intergenic Intergenic 16016 ENSMUSG00000098483.1 ENSMUSG00000098483 ENSMUST00000183794 Mir7078 miRNA Interval_40495 chr12 105237256 105237459 + 0 NA Intergenic Intergenic -14661 ENSMUSG00000041359.14 ENSMUSG00000041359 ENSMUST00000176952 Tcl1 protein_coding Interval_64958 chr16 17524889 17525109 + 0 NA TTS (ENSMUSG00000022761.12) protein_coding-TTS (ENSMUSG00000022761.12) 6113 ENSMUSG00000022760.17 ENSMUSG00000022760 ENSMUST00000231623 Thap7 protein_coding Interval_15905 chr10 59111003 59111593 + 0 NA intron (ENSMUSG00000037990.18, intron 8 of 9) protein_coding-intron (ENSMUSG00000037990.18, intron 8 of 9) -84401 ENSMUSG00000088744.1 ENSMUSG00000088744 ENSMUST00000158119 Gm23223 snoRNA Interval_159688 chr8 97389734 97390059 + 0 NA Intergenic Intergenic 39214 ENSMUSG00000081111.3 ENSMUSG00000081111 ENSMUST00000119397 Gm5913 processed_pseudogene Interval_95067 chr2 103682099 103683392 + 0 NA intron (ENSMUSG00000032724.5, intron 2 of 16) protein_coding-intron (ENSMUSG00000032724.5, intron 2 of 16) -32290 ENSMUSG00000032724.5 ENSMUSG00000032724 ENSMUST00000131122 Abtb2 protein_coding Interval_160246 chr8 107434879 107437320 + 0 NA promoter-TSS (ENSMUSG00000031930.11) protein_coding-promoter-TSS (ENSMUSG00000031930.11) -285 ENSMUSG00000031930.11 ENSMUSG00000031930 ENSMUST00000212993 Wwp2 protein_coding Interval_156568 chr8 52267350 52267693 + 0 NA Intergenic Intergenic 11950 ENSMUSG00000098231.1 ENSMUSG00000098231 ENSMUST00000182090 Gm6463 processed_pseudogene Interval_109531 chr3 144157907 144158189 + 0 NA Intergenic Intergenic -22294 ENSMUSG00000106367.1 ENSMUSG00000106367 ENSMUST00000198202 Gm34078 lincRNA Interval_32321 chr11 106936324 106936549 + 0 NA Intergenic Intergenic -15675 ENSMUSG00000099125.1 ENSMUSG00000099125 ENSMUST00000184007 Gm27322 miRNA Interval_30473 chr11 94591446 94592103 + 0 NA intron (ENSMUSG00000076435.3, intron 1 of 6) protein_coding-intron (ENSMUSG00000076435.3, intron 1 of 15) 9995 ENSMUSG00000076435.3 ENSMUSG00000076435 ENSMUST00000155122 Acsf2 protein_coding Interval_165411 chr9 47581120 47582099 + 0 NA intron (ENSMUSG00000032076.20, intron 1 of 8) protein_coding-intron (ENSMUSG00000032076.20, intron 1 of 8) 51257 ENSMUSG00000032076.20 ENSMUSG00000032076 ENSMUST00000034581 Cadm1 protein_coding Interval_53177 chr14 54929940 54930664 + 0 NA Intergenic Intergenic -2393 ENSMUSG00000040770.5 ENSMUSG00000040770 ENSMUST00000037863 Il25 protein_coding Interval_72711 chr17 31689799 31690099 + 0 NA intron (ENSMUSG00000117656.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000117656.1, intron 1 of 1) 476 ENSMUSG00000117656.1 ENSMUSG00000117656 ENSMUST00000237283 Gm50225 lincRNA Interval_159929 chr8 105244285 105244676 + 0 NA intron (ENSMUSG00000031889.9, intron 6 of 10) protein_coding-intron (ENSMUSG00000031889.9, intron 8 of 15) 10671 ENSMUSG00000069920.10 ENSMUSG00000069920 ENSMUST00000161745 B3gnt9 protein_coding Interval_131587 chr5 138373927 138374490 + 0 NA intron (ENSMUSG00000075591.2, intron 1 of 3) lincRNA-intron (ENSMUSG00000075591.2, intron 1 of 3) -4383 ENSMUSG00000093932.1 ENSMUSG00000093932 ENSMUST00000177701 Gm25525 snRNA Interval_112812 chr4 45222569 45222856 + 0 NA intron (ENSMUSG00000035615.12, intron 1 of 15) protein_coding-intron (ENSMUSG00000035615.12, intron 1 of 15) 21278 ENSMUSG00000086284.1 ENSMUSG00000086284 ENSMUST00000134640 Frmpd1os antisense Interval_174714 chrX 164004777 164005065 + 0 NA intron (ENSMUSG00000031373.4, intron 2 of 7) protein_coding-intron (ENSMUSG00000031373.4, intron 2 of 7) 23060 ENSMUSG00000031373.4 ENSMUSG00000031373 ENSMUST00000126650 Car5b protein_coding Interval_102450 chr3 26697526 26698289 + 0 NA intron (ENSMUSG00000039335.11, intron 2 of 9) protein_coding-intron (ENSMUSG00000039335.11, intron 2 of 10) 60257 ENSMUSG00000039335.11 ENSMUSG00000039335 ENSMUST00000108305 Spata16 protein_coding Interval_141909 chr6 135279437 135280431 + 0 NA Intergenic Intergenic -9425 ENSMUSG00000108276.1 ENSMUSG00000108276 ENSMUST00000203686 Gm36640 antisense Interval_149639 chr7 100264386 100265421 + 0 NA exon (ENSMUSG00000089987.2, exon 1 of 1) processed_pseudogene-exon (ENSMUSG00000089987.2, exon 1 of 1) 228 ENSMUSG00000089987.2 ENSMUSG00000089987 ENSMUST00000160622 Gpx2-ps1 processed_pseudogene Interval_49315 chr13 110664782 110665705 + 0 NA Intergenic Intergenic -18669 ENSMUSG00000114775.1 ENSMUSG00000114775 ENSMUST00000225669 Gm33172 lincRNA Interval_84246 chr19 9006769 9007091 + 0 NA exon (ENSMUSG00000069833.13, exon 5 of 5) protein_coding-exon (ENSMUSG00000069833.13, exon 5 of 5) 17646 ENSMUSG00000069833.13 ENSMUSG00000069833 ENSMUST00000237033 Ahnak protein_coding Interval_18587 chr10 88200685 88201866 + 0 NA promoter-TSS (ENSMUSG00000020056.16) protein_coding-promoter-TSS (ENSMUSG00000020056.16) 12 ENSMUSG00000020056.16 ENSMUSG00000020056 ENSMUST00000182211 Washc3 protein_coding Interval_155998 chr8 41713700 41714164 + 0 NA Intergenic Intergenic -55263 ENSMUSG00000094568.1 ENSMUSG00000094568 ENSMUST00000180067 Smarce1-ps1 processed_pseudogene Interval_27915 chr11 70825643 70826542 + 0 NA Intergenic Intergenic -13506 ENSMUSG00000057135.12 ENSMUSG00000057135 ENSMUST00000074572 Scimp protein_coding Interval_145646 chr7 36695548 36698803 + 0 NA promoter-TSS (ENSMUSG00000021217.7) protein_coding-promoter-TSS (ENSMUSG00000021217.7) -1042 ENSMUSG00000021217.7 ENSMUSG00000021217 ENSMUST00000176413 Tshz3 protein_coding Interval_1692 chr1 31232821 31234268 + 0 NA Intergenic Intergenic 10706 ENSMUSG00000026063.4 ENSMUSG00000026063 ENSMUST00000027230 Pih1d3 protein_coding Interval_15440 chr10 46689676 46690296 + 0 NA Intergenic Intergenic 19842 ENSMUSG00000111754.1 ENSMUSG00000111754 ENSMUST00000217086 Gm19994 processed_pseudogene Interval_163549 chr9 22033070 22033452 + 0 NA intron (ENSMUSG00000003410.8, intron 3 of 5) protein_coding-intron (ENSMUSG00000003410.8, intron 3 of 6) 18762 ENSMUSG00000003410.8 ENSMUSG00000003410 ENSMUST00000215901 Elavl3 protein_coding Interval_1308 chr1 19998746 20000027 + 0 NA Intergenic Intergenic 66162 ENSMUSG00000104095.1 ENSMUSG00000104095 ENSMUST00000194347 Gm37315 TEC Interval_94769 chr2 94157478 94158386 + 0 NA promoter-TSS (ENSMUSG00000027195.10) protein_coding-promoter-TSS (ENSMUSG00000027195.10) 26198 ENSMUSG00000093033.1 ENSMUSG00000093033 ENSMUST00000175292 Gm23630 miRNA Interval_92264 chr2 57536616 57537646 + 0 NA Intergenic Intergenic 92097 ENSMUSG00000081642.1 ENSMUSG00000081642 ENSMUST00000120373 Gm13532 processed_pseudogene Interval_96640 chr2 126734965 126736513 + 0 NA intron (ENSMUSG00000027363.15, intron 7 of 16) protein_coding-intron (ENSMUSG00000027363.15, intron 7 of 18) -26182 ENSMUSG00000074846.3 ENSMUSG00000074846 ENSMUST00000188689 Gm10774 processed_pseudogene Interval_1075 chr1 15054950 15055815 + 0 NA Intergenic Intergenic -36223 ENSMUSG00000088159.1 ENSMUSG00000088159 ENSMUST00000157534 Gm26345 snoRNA Interval_21236 chr10 127360398 127360866 + 0 NA intron (ENSMUSG00000025405.9, intron 1 of 1) protein_coding-intron (ENSMUSG00000025405.9, intron 1 of 1) -6221 ENSMUSG00000047492.5 ENSMUSG00000047492 ENSMUST00000059718 Inhbe protein_coding Interval_19441 chr10 99278976 99280067 + 0 NA TTS (ENSMUSG00000112544.1) lincRNA-TTS (ENSMUSG00000112544.1) 4816 ENSMUSG00000112544.1 ENSMUSG00000112544 ENSMUST00000218105 Gm48089 lincRNA Interval_136533 chr6 55231892 55233240 + 0 NA intron (ENSMUSG00000038022.11, intron 5 of 10) protein_coding-intron (ENSMUSG00000038022.11, intron 5 of 17) 29183 ENSMUSG00000038022.11 ENSMUSG00000038022 ENSMUST00000203225 Mindy4 protein_coding Interval_75372 chr17 66208090 66209233 + 0 NA Intergenic Intergenic 15309 ENSMUSG00000117296.1 ENSMUSG00000117296 ENSMUST00000233041 Gm20742 lincRNA Interval_21650 chr11 3467659 3467980 + 0 NA intron (ENSMUSG00000034587.8, intron 1 of 3) processed_transcript-intron (ENSMUSG00000034587.8, intron 1 of 3) 3558 ENSMUSG00000081059.3 ENSMUSG00000081059 ENSMUST00000120551 Gm11945 processed_pseudogene Interval_165295 chr9 46090283 46090707 + 0 NA intron (ENSMUSG00000034135.15, intron 1 of 24) protein_coding-intron (ENSMUSG00000034135.15, intron 1 of 22) -32635 ENSMUSG00000034135.15 ENSMUSG00000034135 ENSMUST00000138338 Sik3 protein_coding Interval_115145 chr4 91446755 91448503 + 0 NA Intergenic Intergenic -74266 ENSMUSG00000098563.1 ENSMUSG00000098563 ENSMUST00000183406 Mir6402 miRNA Interval_86143 chr19 37024431 37027140 + 0 NA intron (ENSMUSG00000039652.16, intron 10 of 10) protein_coding-intron (ENSMUSG00000039652.16, intron 10 of 10) 65600 ENSMUSG00000040565.8 ENSMUSG00000040565 ENSMUST00000236343 Btaf1 protein_coding Interval_160215 chr8 107182625 107182936 + 0 NA intron (ENSMUSG00000031924.4, intron 4 of 4) protein_coding-intron (ENSMUSG00000031924.4, intron 4 of 4) 16865 ENSMUSG00000031924.4 ENSMUSG00000031924 ENSMUST00000212920 Cyb5b protein_coding Interval_78580 chr18 14888303 14889120 + 0 NA intron (ENSMUSG00000054321.7, intron 14 of 14) protein_coding-intron (ENSMUSG00000054321.7, intron 14 of 14) 35400 ENSMUSG00000117436.1 ENSMUSG00000117436 ENSMUST00000234412 Gm9474 processed_pseudogene Interval_104716 chr3 69699697 69700600 + 0 NA Intergenic Intergenic 14681 ENSMUSG00000087848.1 ENSMUSG00000087848 ENSMUST00000157223 Gm25621 rRNA Interval_11734 chr1 184971939 184972845 + 0 NA intron (ENSMUSG00000026620.11, intron 1 of 17) protein_coding-intron (ENSMUSG00000026620.11, intron 1 of 17) 27083 ENSMUSG00000026620.11 ENSMUSG00000026620 ENSMUST00000192657 Mark1 protein_coding Interval_108107 chr3 121538855 121541158 + 0 NA Intergenic Intergenic 8377 ENSMUSG00000097124.2 ENSMUSG00000097124 ENSMUST00000180804 A530020G20Rik antisense Interval_17144 chr10 72599779 72599970 + 0 NA Intergenic Intergenic -56370 ENSMUSG00000019923.14 ENSMUSG00000019923 ENSMUST00000219352 Zwint protein_coding Interval_2126 chr1 36595704 36596528 + 0 NA intron (ENSMUSG00000046337.17, intron 2 of 5) protein_coding-intron (ENSMUSG00000046337.17, intron 10 of 14) 4316 ENSMUSG00000046337.17 ENSMUSG00000046337 ENSMUST00000114981 Fam178b protein_coding Interval_64320 chr16 10465106 10465592 + 0 NA Intergenic Intergenic -18022 ENSMUSG00000050908.12 ENSMUSG00000050908 ENSMUST00000141587 Tvp23a protein_coding Interval_143950 chr7 18402296 18404241 + 0 NA Intergenic Intergenic -2403 ENSMUSG00000109209.1 ENSMUSG00000109209 ENSMUST00000208748 Gm45104 TEC Interval_66774 chr16 37514832 37515128 + 0 NA intron (ENSMUSG00000022828.10, intron 4 of 4) protein_coding-intron (ENSMUSG00000022828.10, intron 4 of 4) 24796 ENSMUSG00000022828.10 ENSMUSG00000022828 ENSMUST00000130350 Gtf2e1 protein_coding Interval_147363 chr7 66158206 66159136 + 0 NA intron (ENSMUSG00000032640.10, intron 2 of 2) protein_coding-intron (ENSMUSG00000032640.10, intron 2 of 2) 14450 ENSMUSG00000097634.2 ENSMUSG00000097634 ENSMUST00000181911 Gm26827 antisense Interval_34080 chr11 120391896 120392093 + 0 NA intron (ENSMUSG00000039703.15, intron 12 of 15) protein_coding-intron (ENSMUSG00000039703.15, intron 12 of 16) -8491 ENSMUSG00000039703.15 ENSMUSG00000039703 ENSMUST00000136095 Nploc4 protein_coding Interval_72280 chr17 28951668 28952956 + 0 NA promoter-TSS (ENSMUSG00000005936.19) protein_coding-promoter-TSS (ENSMUSG00000005936.19) 96 ENSMUSG00000117080.1 ENSMUSG00000117080 ENSMUST00000233094 1700063J08Rik bidirectional_promoter_lncRNA Interval_28410 chr11 75706512 75707874 + 0 NA TTS (ENSMUSG00000017776.15) protein_coding-TTS (ENSMUSG00000017776.15) 27651 ENSMUSG00000017776.15 ENSMUSG00000017776 ENSMUST00000147718 Crk protein_coding Interval_161394 chr8 120204145 120204845 + 0 NA TTS (ENSMUSG00000097960.1) lincRNA-TTS (ENSMUSG00000097960.1) 23735 ENSMUSG00000097960.1 ENSMUSG00000097960 ENSMUST00000183235 A330074K22Rik lincRNA Interval_120544 chr4 149262660 149263561 + 0 NA intron (ENSMUSG00000063077.15, intron 11 of 49) protein_coding-intron (ENSMUSG00000063077.15, intron 10 of 20) 44582 ENSMUSG00000063077.15 ENSMUSG00000063077 ENSMUST00000132072 Kif1b protein_coding Interval_77662 chr17 93817338 93818799 + 0 NA Intergenic Intergenic -137034 ENSMUSG00000117537.1 ENSMUSG00000117537 ENSMUST00000234228 Gm50003 processed_pseudogene Interval_75773 chr17 71250887 71251669 + 0 NA TTS (ENSMUSG00000024053.11) protein_coding-TTS (ENSMUSG00000024053.11) 59003 ENSMUSG00000024053.11 ENSMUSG00000024053 ENSMUST00000233659 Emilin2 protein_coding Interval_78306 chr18 11865896 11866157 + 0 NA intron (ENSMUSG00000040957.15, intron 1 of 8) protein_coding-intron (ENSMUSG00000040957.15, intron 1 of 8) 21726 ENSMUSG00000040957.15 ENSMUSG00000040957 ENSMUST00000225430 Cables1 protein_coding Interval_110972 chr4 10974594 10975043 + 0 NA Intergenic Intergenic 28210 ENSMUSG00000081715.1 ENSMUSG00000081715 ENSMUST00000117608 Rps11-ps3 processed_pseudogene Interval_35989 chr12 33146889 33148159 + 0 NA promoter-TSS (ENSMUSG00000020564.17) protein_coding-promoter-TSS (ENSMUSG00000020564.17) 72 ENSMUSG00000052125.16 ENSMUSG00000052125 ENSMUST00000172344 F730043M19Rik bidirectional_promoter_lncRNA Interval_131904 chr5 140715589 140715872 + 0 NA TTS (ENSMUSG00000000148.17) protein_coding-TTS (ENSMUSG00000000148.17) -8408 ENSMUSG00000050022.16 ENSMUSG00000050022 ENSMUST00000176035 Amz1 protein_coding Interval_96431 chr2 122492321 122492541 + 0 NA intron (ENSMUSG00000079071.2, intron 3 of 17) protein_coding-intron (ENSMUSG00000079071.2, intron 3 of 17) 6514 ENSMUSG00000079071.2 ENSMUSG00000079071 ENSMUST00000132215 Slc28a2b protein_coding Interval_4131 chr1 69867569 69868605 + 0 NA intron (ENSMUSG00000053153.14, intron 5 of 12) protein_coding-intron (ENSMUSG00000053153.14, intron 5 of 16) 53660 ENSMUSG00000089345.1 ENSMUSG00000089345 ENSMUST00000158720 Gm22665 misc_RNA Interval_144822 chr7 28458672 28459664 + 0 NA exon (ENSMUSG00000030600.15, exon 1 of 2) protein_coding-exon (ENSMUSG00000030600.15, exon 1 of 2) 6930 ENSMUSG00000030600.15 ENSMUSG00000030600 ENSMUST00000108288 Lrfn1 protein_coding Interval_22375 chr11 9249775 9250262 + 0 NA intron (ENSMUSG00000004668.14, intron 4 of 5) protein_coding-intron (ENSMUSG00000004668.14, intron 4 of 61) 56567 ENSMUSG00000004668.14 ENSMUSG00000004668 ENSMUST00000151522 Abca13 protein_coding Interval_160694 chr8 111648663 111649298 + 0 NA intron (ENSMUSG00000055835.10, intron 1 of 4) protein_coding-intron (ENSMUSG00000055835.10, intron 1 of 3) 5500 ENSMUSG00000055835.10 ENSMUSG00000055835 ENSMUST00000211926 Zfp1 protein_coding Interval_32350 chr11 107107421 107108171 + 0 NA intron (ENSMUSG00000040481.17, intron 2 of 29) protein_coding-intron (ENSMUSG00000040481.17, intron 2 of 27) -49612 ENSMUSG00000087596.1 ENSMUSG00000087596 ENSMUST00000129501 Gm11715 antisense Interval_105212 chr3 83895603 83896356 + 0 NA Intergenic Intergenic 11600 ENSMUSG00000033767.14 ENSMUSG00000033767 ENSMUST00000192811 Tmem131l protein_coding Interval_64420 chr16 11243847 11246078 + 0 NA intron (ENSMUSG00000062203.15, intron 1 of 14) protein_coding-intron (ENSMUSG00000062203.15, intron 1 of 14) 9363 ENSMUSG00000062203.15 ENSMUSG00000062203 ENSMUST00000229660 Gspt1 protein_coding Interval_119435 chr4 137617268 137618284 + 0 NA promoter-TSS (ENSMUSG00000043411.15) protein_coding-promoter-TSS (ENSMUSG00000043411.15) -32525 ENSMUSG00000043411.15 ENSMUSG00000043411 ENSMUST00000125151 Usp48 protein_coding Interval_35700 chr12 28248756 28249173 + 0 NA TTS (ENSMUSG00000113235.1) lincRNA-TTS (ENSMUSG00000113235.1) 72094 ENSMUSG00000113939.1 ENSMUSG00000113939 ENSMUST00000222289 Gm47871 lincRNA Interval_109258 chr3 138442353 138443635 + 0 NA promoter-TSS (ENSMUSG00000028138.8) protein_coding-promoter-TSS (ENSMUSG00000028138.8) -187 ENSMUSG00000028138.8 ENSMUSG00000028138 ENSMUST00000159392 Adh5 protein_coding Interval_1011 chr1 14000707 14002703 + 0 NA Intergenic Intergenic 69327 ENSMUSG00000089358.1 ENSMUSG00000089358 ENSMUST00000158733 Gm25491 misc_RNA Interval_125895 chr5 75501067 75501334 + 0 NA Intergenic Intergenic 59950 ENSMUSG00000089078.1 ENSMUSG00000089078 ENSMUST00000158453 Gm24502 snRNA Interval_26006 chr11 53443965 53444174 + 0 NA Intergenic Intergenic 13041 ENSMUSG00000072963.2 ENSMUSG00000072963 ENSMUST00000084653 Gm10447 bidirectional_promoter_lncRNA Interval_168391 chr9 80002416 80003753 + 0 NA promoter-TSS (ENSMUSG00000111827.1) processed_pseudogene-promoter-TSS (ENSMUSG00000111827.1) -754 ENSMUSG00000111827.1 ENSMUSG00000111827 ENSMUST00000213783 Gm8131 processed_pseudogene Interval_156647 chr8 56403312 56404815 + 0 NA Intergenic Intergenic -49452 ENSMUSG00000110309.1 ENSMUSG00000110309 ENSMUST00000209962 Gm7419 processed_pseudogene Interval_10436 chr1 170859083 170859446 + 0 NA intron (ENSMUSG00000026663.6, intron 1 of 15) protein_coding-intron (ENSMUSG00000026663.6, intron 1 of 15) -9381 ENSMUSG00000053925.4 ENSMUSG00000053925 ENSMUST00000171747 Gm9929 processed_transcript Interval_96661 chr2 126948896 126950039 + 0 NA Intergenic Intergenic -29122 ENSMUSG00000027366.12 ENSMUSG00000027366 ENSMUST00000125592 Sppl2a protein_coding Interval_135076 chr6 35197851 35198118 + 0 NA intron (ENSMUSG00000038759.15, intron 10 of 14) protein_coding-intron (ENSMUSG00000038759.15, intron 10 of 42) 20368 ENSMUSG00000038759.15 ENSMUSG00000038759 ENSMUST00000200739 Nup205 protein_coding Interval_166679 chr9 61877503 61879368 + 0 NA Intergenic Intergenic 26731 ENSMUSG00000110968.1 ENSMUSG00000110968 ENSMUST00000213861 Gm19208 processed_pseudogene Interval_128360 chr5 112771443 112772076 + 0 NA intron (ENSMUSG00000072720.9, intron 34 of 43) protein_coding-intron (ENSMUSG00000072720.9, intron 34 of 43) -21573 ENSMUSG00000098230.7 ENSMUSG00000098230 ENSMUST00000189887 1700095B10Rik antisense Interval_80985 chr18 52314437 52314609 + 0 NA Intergenic Intergenic -17026 ENSMUSG00000024510.6 ENSMUSG00000024510 ENSMUST00000025388 Ftmt protein_coding Interval_3685 chr1 60823078 60823420 + 0 NA Intergenic Intergenic 14133 ENSMUSG00000083355.1 ENSMUSG00000083355 ENSMUST00000122024 Gm11581 processed_pseudogene Interval_119635 chr4 138879608 138879835 + 0 NA intron (ENSMUSG00000028751.13, intron 1 of 3) protein_coding-intron (ENSMUSG00000028751.13, intron 2 of 4) 361 ENSMUSG00000028751.13 ENSMUSG00000028751 ENSMUST00000105804 Pla2g2e protein_coding Interval_63058 chr15 98877496 98877690 + 0 NA TTS (ENSMUSG00000023755.10) protein_coding-TTS (ENSMUSG00000023755.10) 3308 ENSMUSG00000023755.10 ENSMUSG00000023755 ENSMUST00000155699 Rhebl1 protein_coding Interval_77474 chr17 89465785 89466165 + 0 NA Intergenic Intergenic 86734 ENSMUSG00000117524.1 ENSMUSG00000117524 ENSMUST00000234513 Gm4719 lincRNA Interval_104182 chr3 59947036 59947627 + 0 NA Intergenic Intergenic -12029 ENSMUSG00000070465.9 ENSMUSG00000070465 ENSMUST00000191541 Gm9696 transcribed_unprocessed_pseudogene Interval_88050 chr19 58441498 58442405 + 0 NA intron (ENSMUSG00000025089.15, intron 3 of 9) protein_coding-intron (ENSMUSG00000025089.15, intron 4 of 10) 12515 ENSMUSG00000025089.15 ENSMUSG00000025089 ENSMUST00000135730 Gfra1 protein_coding Interval_55021 chr14 77029264 77030183 + 0 NA intron (ENSMUSG00000044350.14, intron 6 of 7) protein_coding-intron (ENSMUSG00000044350.14, intron 6 of 7) 6358 ENSMUSG00000044350.14 ENSMUSG00000044350 ENSMUST00000142300 Lacc1 protein_coding Interval_148286 chr7 80304176 80304540 + 0 NA promoter-TSS (ENSMUSG00000038943.16) protein_coding-promoter-TSS (ENSMUSG00000038943.16) 9845 ENSMUSG00000038943.16 ENSMUSG00000038943 ENSMUST00000174599 Prc1 protein_coding Interval_162213 chr8 126017371 126017760 + 0 NA intron (ENSMUSG00000033998.9, intron 1 of 3) protein_coding-intron (ENSMUSG00000033998.9, intron 1 of 2) 22129 ENSMUSG00000033998.9 ENSMUSG00000033998 ENSMUST00000212831 Kcnk1 protein_coding Interval_22563 chr11 11797169 11798391 + 0 NA intron (ENSMUSG00000035455.12, intron 3 of 3) protein_coding-intron (ENSMUSG00000035455.12, intron 1 of 2) 11182 ENSMUSG00000035455.12 ENSMUSG00000035455 ENSMUST00000150714 Fignl1 protein_coding Interval_143749 chr7 16051988 16053105 + 0 NA Intergenic Intergenic -4625 ENSMUSG00000070808.4 ENSMUSG00000070808 ENSMUST00000209251 Bicra protein_coding Interval_166811 chr9 62897238 62897437 + 0 NA intron (ENSMUSG00000032405.10, intron 8 of 13) protein_coding-intron (ENSMUSG00000032405.10, intron 8 of 13) -29337 ENSMUSG00000074250.11 ENSMUSG00000074250 ENSMUST00000139570 Gm10653 transcribed_processed_pseudogene Interval_87680 chr19 54365402 54365840 + 0 NA Intergenic Intergenic -79359 ENSMUSG00000117755.1 ENSMUSG00000117755 ENSMUST00000236789 Gm50188 processed_pseudogene Interval_65006 chr16 17806858 17807957 + 0 NA TTS (ENSMUSG00000012017.4) protein_coding-TTS (ENSMUSG00000012017.4) 8914 ENSMUSG00000116777.1 ENSMUSG00000116777 ENSMUST00000232392 Zfp520-ps processed_pseudogene Interval_111245 chr4 15896233 15896496 + 0 NA TTS (ENSMUSG00000028222.2) protein_coding-TTS (ENSMUSG00000028222.2) 10907 ENSMUSG00000028222.2 ENSMUSG00000028222 ENSMUST00000141336 Calb1 protein_coding Interval_92138 chr2 53925856 53926361 + 0 NA Intergenic Intergenic 159444 ENSMUSG00000075334.2 ENSMUSG00000075334 ENSMUST00000100089 Rprm protein_coding Interval_31593 chr11 101575237 101576840 + 0 NA TTS (ENSMUSG00000017119.19) protein_coding-TTS (ENSMUSG00000017119.19) -6206 ENSMUSG00000034947.13 ENSMUSG00000034947 ENSMUST00000128659 Tmem106a protein_coding Interval_88138 chr19 59492514 59493353 + 0 NA promoter-TSS (ENSMUSG00000100119.1) lincRNA-promoter-TSS (ENSMUSG00000100119.1) -203 ENSMUSG00000100119.1 ENSMUSG00000100119 ENSMUST00000190204 2700089I24Rik lincRNA Interval_42348 chr13 12267180 12267981 + 0 NA Intergenic Intergenic 6516 ENSMUSG00000052374.16 ENSMUSG00000052374 ENSMUST00000110616 Actn2 protein_coding Interval_106152 chr3 93708580 93709603 + 0 NA TTS (ENSMUSG00000104229.1) unprocessed_pseudogene-TTS (ENSMUSG00000104229.1) 1019 ENSMUSG00000104229.1 ENSMUSG00000104229 ENSMUST00000195682 Gm18433 unprocessed_pseudogene Interval_17966 chr10 81112681 81113550 + 0 NA intron (ENSMUSG00000035027.18, intron 2 of 10) protein_coding-intron (ENSMUSG00000035027.18, intron 2 of 10) -6225 ENSMUSG00000035027.18 ENSMUSG00000035027 ENSMUST00000218571 Map2k2 protein_coding Interval_143885 chr7 16923491 16924871 + 0 NA promoter-TSS (ENSMUSG00000019370.10) protein_coding-promoter-TSS (ENSMUSG00000019370.10) -352 ENSMUSG00000019370.10 ENSMUSG00000019370 ENSMUST00000173557 Calm3 protein_coding Interval_145061 chr7 29815474 29816449 + 0 NA promoter-TSS (ENSMUSG00000011427.16) protein_coding-promoter-TSS (ENSMUSG00000011427.16) -3030 ENSMUSG00000011427.16 ENSMUSG00000011427 ENSMUST00000207328 Zfp790 protein_coding Interval_101340 chr2 180582143 180583319 + 0 NA promoter-TSS (ENSMUSG00000027569.15) protein_coding-promoter-TSS (ENSMUSG00000027569.15) 1427 ENSMUSG00000027569.15 ENSMUSG00000027569 ENSMUST00000149969 Mrgbp protein_coding Interval_56787 chr14 122079743 122080088 + 0 NA intron (ENSMUSG00000115121.1, intron 3 of 3) lincRNA-intron (ENSMUSG00000115121.1, intron 1 of 4) 11311 ENSMUSG00000115121.1 ENSMUSG00000115121 ENSMUST00000226723 Gm49236 lincRNA Interval_52280 chr14 43735672 43737184 + 0 NA promoter-TSS (ENSMUSG00000115675.1) unprocessed_pseudogene-promoter-TSS (ENSMUSG00000115675.1) -31 ENSMUSG00000115675.1 ENSMUSG00000115675 ENSMUST00000228192 Gm49080 unprocessed_pseudogene Interval_4876 chr1 80990762 80991084 + 0 NA Intergenic Intergenic 41497 ENSMUSG00000099918.1 ENSMUSG00000099918 ENSMUST00000188657 Gm28066 processed_pseudogene Interval_61298 chr15 80671071 80672657 + 0 NA promoter-TSS (ENSMUSG00000022408.7) protein_coding-promoter-TSS (ENSMUSG00000022408.7) 17 ENSMUSG00000022408.7 ENSMUSG00000022408 ENSMUST00000023044 Fam83f protein_coding Interval_137261 chr6 70843832 70845262 + 0 NA promoter-TSS (ENSMUSG00000031668.14) protein_coding-promoter-TSS (ENSMUSG00000031668.14) -9 ENSMUSG00000031668.14 ENSMUSG00000031668 ENSMUST00000161316 Eif2ak3 protein_coding Interval_104086 chr3 58487303 58487571 + 0 NA Intergenic Intergenic 38455 ENSMUSG00000027808.8 ENSMUSG00000027808 ENSMUST00000029385 Serp1 protein_coding Interval_49670 chr13 113882900 113883628 + 0 NA intron (ENSMUSG00000042348.10, intron 1 of 3) protein_coding-intron (ENSMUSG00000042348.10, intron 1 of 4) 88671 ENSMUSG00000042348.10 ENSMUSG00000042348 ENSMUST00000224068 Arl15 protein_coding Interval_77919 chr18 5522271 5523136 + 0 NA intron (ENSMUSG00000063087.15, intron 5 of 6) processed_transcript-intron (ENSMUSG00000063087.15, intron 5 of 6) 52352 ENSMUSG00000097926.1 ENSMUSG00000097926 ENSMUST00000181714 Gm26575 sense_intronic Interval_92861 chr2 67006366 67006770 + 0 NA Intergenic Intergenic 64010 ENSMUSG00000082218.1 ENSMUSG00000082218 ENSMUST00000122405 Gm13602 processed_pseudogene Interval_86504 chr19 41205863 41207398 + 0 NA exon (ENSMUSG00000025013.15, exon 1 of 21) protein_coding-exon (ENSMUSG00000025013.15, exon 1 of 21) 144 ENSMUSG00000025013.15 ENSMUSG00000025013 ENSMUST00000169941 Tll2 protein_coding Interval_132302 chr5 144039259 144041253 + 0 NA Intergenic Intergenic -13586 ENSMUSG00000029618.13 ENSMUSG00000029618 ENSMUST00000110702 Ocm protein_coding Interval_22513 chr11 11286307 11287267 + 0 NA intron (ENSMUSG00000020193.3, intron 7 of 7) protein_coding-intron (ENSMUSG00000020193.3, intron 7 of 7) -25646 ENSMUSG00000082875.1 ENSMUSG00000082875 ENSMUST00000117333 Gm12598 processed_pseudogene Interval_141639 chr6 131642801 131643585 + 0 NA Intergenic Intergenic -12281 ENSMUSG00000054497.5 ENSMUSG00000054497 ENSMUST00000067597 Tas2r130 protein_coding Interval_19386 chr10 98767575 98768009 + 0 NA Intergenic Intergenic -68082 ENSMUSG00000112647.1 ENSMUSG00000112647 ENSMUST00000217680 Gm5427 lincRNA Interval_99909 chr2 165751160 165751437 + 0 NA intron (ENSMUSG00000017897.18, intron 4 of 6) protein_coding-intron (ENSMUSG00000017897.18, intron 9 of 15) -84441 ENSMUSG00000081758.1 ENSMUSG00000081758 ENSMUST00000118200 Gm11460 processed_pseudogene Interval_13298 chr10 14321665 14322131 + 0 NA intron (ENSMUSG00000112679.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000112679.1, intron 1 of 2) -5513 ENSMUSG00000112225.1 ENSMUSG00000112225 ENSMUST00000218527 Gm48854 lincRNA Interval_157166 chr8 66807946 66808857 + 0 NA Intergenic Intergenic 28321 ENSMUSG00000110454.1 ENSMUSG00000110454 ENSMUST00000211844 Gm45911 lincRNA Interval_55630 chr14 96786934 96788061 + 0 NA Intergenic Intergenic -86888 ENSMUSG00000115315.1 ENSMUSG00000115315 ENSMUST00000228771 Gnb1-ps2 processed_pseudogene Interval_174547 chrX 157547061 157547473 + 0 NA TTS (ENSMUSG00000046873.18) protein_coding-TTS (ENSMUSG00000046873.18) 6401 ENSMUSG00000082002.1 ENSMUSG00000082002 ENSMUST00000122274 Gm6568 processed_pseudogene Interval_129100 chr5 117396206 117398607 + 0 NA Intergenic Intergenic 8191 ENSMUSG00000086075.1 ENSMUSG00000086075 ENSMUST00000156391 Gm15728 lincRNA Interval_158760 chr8 85971908 85972131 + 0 NA intron (ENSMUSG00000036879.15, intron 15 of 31) protein_coding-intron (ENSMUSG00000036879.15, intron 15 of 31) -22226 ENSMUSG00000098439.1 ENSMUSG00000098439 ENSMUST00000183645 Hm629797 sense_intronic Interval_97979 chr2 146350689 146350958 + 0 NA intron (ENSMUSG00000037110.20, intron 29 of 41) protein_coding-intron (ENSMUSG00000037110.20, intron 28 of 40) 45276 ENSMUSG00000042938.8 ENSMUSG00000042938 ENSMUST00000122417 Gm14117 processed_pseudogene Interval_22799 chr11 15963511 15963846 + 0 NA Intergenic Intergenic -74115 ENSMUSG00000104323.1 ENSMUSG00000104323 ENSMUST00000193500 Gm37319 TEC Interval_124142 chr5 38644597 38645278 + 0 NA Intergenic Intergenic 39889 ENSMUSG00000046572.10 ENSMUSG00000046572 ENSMUST00000178760 Zfp518b protein_coding Interval_87815 chr19 56201157 56202011 + 0 NA Intergenic Intergenic 76061 ENSMUSG00000077223.1 ENSMUSG00000077223 ENSMUST00000104035 Gm22271 snoRNA Interval_34567 chr12 5213568 5213794 + 0 NA intron (ENSMUSG00000020627.10, intron 1 of 11) protein_coding-intron (ENSMUSG00000020627.10, intron 2 of 13) 22283 ENSMUSG00000112020.1 ENSMUSG00000112020 ENSMUST00000219031 Gm48532 TEC Interval_152975 chr7 140186436 140187515 + 0 NA Intergenic Intergenic 13740 ENSMUSG00000051051.7 ENSMUSG00000051051 ENSMUST00000055890 Olfr523 protein_coding Interval_167782 chr9 72683554 72683940 + 0 NA intron (ENSMUSG00000032216.15, intron 5 of 7) protein_coding-intron (ENSMUSG00000032216.15, intron 5 of 28) -3477 ENSMUSG00000104273.1 ENSMUSG00000104273 ENSMUST00000195338 A530064N14Rik TEC Interval_108129 chr3 121753961 121754752 + 0 NA TTS (ENSMUSG00000104676.1) TEC-TTS (ENSMUSG00000104676.1) 4290 ENSMUSG00000104676.1 ENSMUSG00000104676 ENSMUST00000196026 Gm42777 TEC Interval_114142 chr4 64426380 64427246 + 0 NA Intergenic Intergenic -17917 ENSMUSG00000077214.1 ENSMUSG00000077214 ENSMUST00000104026 Gm23950 snoRNA Interval_97035 chr2 130684661 130686343 + 0 NA exon (ENSMUSG00000074796.10, exon 17 of 21) protein_coding-exon (ENSMUSG00000074796.10, exon 17 of 21) 3063 ENSMUSG00000074796.10 ENSMUSG00000074796 ENSMUST00000127397 Slc4a11 protein_coding Interval_108542 chr3 128337120 128337718 + 0 NA Intergenic Intergenic -56328 ENSMUSG00000106119.1 ENSMUSG00000106119 ENSMUST00000197882 Gm43656 processed_pseudogene Interval_58734 chr15 37461209 37461592 + 0 NA intron (ENSMUSG00000115157.1, intron 6 of 7) protein_coding-intron (ENSMUSG00000051359.15, intron 4 of 6) -2365 ENSMUSG00000051359.15 ENSMUSG00000051359 ENSMUST00000123317 Ncald protein_coding Interval_174199 chrX 139441082 139442783 + 0 NA Intergenic Intergenic -38439 ENSMUSG00000042498.16 ENSMUSG00000042498 ENSMUST00000113030 Radx protein_coding Interval_148693 chr7 84186236 84186421 + 0 NA intron (ENSMUSG00000097016.2, intron 2 of 4) bidirectional_promoter_lncRNA-intron (ENSMUSG00000097016.2, intron 2 of 3) 15763 ENSMUSG00000092743.1 ENSMUSG00000092743 ENSMUST00000175002 Gm22177 snRNA Interval_90266 chr2 29426401 29426871 + 0 NA intron (ENSMUSG00000026799.15, intron 3 of 4) protein_coding-intron (ENSMUSG00000026799.15, intron 3 of 7) -30177 ENSMUSG00000086994.1 ENSMUSG00000086994 ENSMUST00000153600 Gm13402 antisense Interval_63035 chr15 98755429 98756238 + 0 NA intron (ENSMUSG00000051853.10, intron 1 of 4) protein_coding-intron (ENSMUSG00000051853.10, intron 1 of 4) 7159 ENSMUSG00000051853.10 ENSMUSG00000051853 ENSMUST00000156572 Arf3 protein_coding Interval_157237 chr8 68309522 68310370 + 0 NA intron (ENSMUSG00000053886.4, intron 3 of 7) protein_coding-intron (ENSMUSG00000053886.4, intron 4 of 8) 8134 ENSMUSG00000110650.1 ENSMUSG00000110650 ENSMUST00000212440 Gm19170 processed_pseudogene Interval_33313 chr11 115864098 115865084 + 0 NA exon (ENSMUSG00000034427.17, exon 10 of 64) protein_coding-exon (ENSMUSG00000034427.17, exon 10 of 64) -12943 ENSMUSG00000034427.17 ENSMUSG00000034427 ENSMUST00000141947 Myo15b protein_coding Interval_99569 chr2 163279829 163280253 + 0 NA intron (ENSMUSG00000074607.11, intron 3 of 8) protein_coding-intron (ENSMUSG00000074607.11, intron 3 of 8) 54587 ENSMUSG00000074607.11 ENSMUSG00000074607 ENSMUST00000148599 Tox2 protein_coding Interval_54352 chr14 67874102 67874437 + 0 NA intron (ENSMUSG00000044447.5, intron 2 of 17) protein_coding-intron (ENSMUSG00000044447.5, intron 2 of 51) -14524 ENSMUSG00000098866.1 ENSMUSG00000098866 ENSMUST00000183732 Mir6539 miRNA Interval_18803 chr10 90992206 90992820 + 0 NA promoter-TSS (ENSMUSG00000019979.12) protein_coding-promoter-TSS (ENSMUSG00000019979.12) -13228 ENSMUSG00000087966.1 ENSMUSG00000087966 ENSMUST00000157341 Gm25390 snRNA Interval_173671 chrX 101697708 101698663 + 0 NA Intergenic Intergenic -6335 ENSMUSG00000082729.3 ENSMUSG00000082729 ENSMUST00000121259 Gm14845 processed_pseudogene Interval_36002 chr12 33220168 33221029 + 0 NA intron (ENSMUSG00000020564.17, intron 3 of 12) protein_coding-intron (ENSMUSG00000020564.17, intron 2 of 2) 8256 ENSMUSG00000079143.3 ENSMUSG00000079143 ENSMUST00000155877 Atxn7l1os1 antisense Interval_3769 chr1 62983053 62983251 + 0 NA intron (ENSMUSG00000040865.15, intron 9 of 12) protein_coding-intron (ENSMUSG00000040865.15, intron 9 of 12) -42590 ENSMUSG00000104991.1 ENSMUSG00000104991 ENSMUST00000199516 Gm44468 miRNA Interval_149017 chr7 92027060 92027247 + 0 NA intron (ENSMUSG00000052572.19, intron 9 of 21) protein_coding-intron (ENSMUSG00000052572.19, intron 10 of 22) -37440 ENSMUSG00000109191.1 ENSMUSG00000109191 ENSMUST00000208051 Gm45131 TEC Interval_126121 chr5 77666946 77668088 + 0 NA Intergenic Intergenic 2329 ENSMUSG00000089415.1 ENSMUSG00000089415 ENSMUST00000158790 Gm22011 snoRNA Interval_109116 chr3 135903520 135903873 + 0 NA promoter-TSS (ENSMUSG00000104710.1) antisense-promoter-TSS (ENSMUSG00000104710.1) -855 ENSMUSG00000106141.1 ENSMUSG00000106141 ENSMUST00000199246 Gm18330 processed_pseudogene Interval_173330 chrX 79929674 79930680 + 0 NA Intergenic Intergenic -26611 ENSMUSG00000082372.1 ENSMUSG00000082372 ENSMUST00000122221 Gm4772 processed_pseudogene Interval_91305 chr2 37594260 37594545 + 0 NA promoter-TSS (ENSMUSG00000026915.16) protein_coding-promoter-TSS (ENSMUSG00000026915.16) -7884 ENSMUSG00000026915.16 ENSMUSG00000026915 ENSMUST00000144206 Strbp protein_coding Interval_56926 chr14 123545052 123545562 + 0 NA intron (ENSMUSG00000000197.8, intron 7 of 10) protein_coding-intron (ENSMUSG00000000197.8, intron 7 of 43) 81837 ENSMUSG00000000197.8 ENSMUSG00000000197 ENSMUST00000228766 Nalcn protein_coding Interval_66307 chr16 33042029 33043769 + 0 NA intron (ENSMUSG00000035578.16, intron 2 of 7) protein_coding-intron (ENSMUSG00000035578.16, intron 4 of 4) 6971 ENSMUSG00000035578.16 ENSMUSG00000035578 ENSMUST00000126793 Iqcg protein_coding Interval_94826 chr2 95448693 95449604 + 0 NA Intergenic Intergenic 54906 ENSMUSG00000084906.1 ENSMUSG00000084906 ENSMUST00000148637 Gm13794 lincRNA Interval_82012 chr18 67180026 67180907 + 0 NA intron (ENSMUSG00000024524.17, intron 4 of 5) protein_coding-intron (ENSMUSG00000024524.17, intron 4 of 11) -5475 ENSMUSG00000095972.1 ENSMUSG00000095972 ENSMUST00000180237 Gm23512 snRNA Interval_103293 chr3 38220482 38221757 + 0 NA Intergenic Intergenic -2332 ENSMUSG00000105943.1 ENSMUSG00000105943 ENSMUST00000198365 Gm2965 processed_pseudogene Interval_94817 chr2 94690409 94690643 + 0 NA Intergenic Intergenic 40212 ENSMUSG00000087069.1 ENSMUSG00000087069 ENSMUST00000124214 Gm13793 lincRNA Interval_5424 chr1 88678350 88678813 + 0 NA intron (ENSMUSG00000049866.12, intron 1 of 2) protein_coding-intron (ENSMUSG00000049866.12, intron 1 of 2) 22273 ENSMUSG00000100367.1 ENSMUSG00000100367 ENSMUST00000186042 Gm29336 lincRNA Interval_608 chr1 8859117 8860109 + 0 NA intron (ENSMUSG00000025909.16, intron 3 of 8) protein_coding-intron (ENSMUSG00000025909.16, intron 3 of 19) 2850 ENSMUSG00000104504.1 ENSMUSG00000104504 ENSMUST00000192115 Gm7445 processed_pseudogene Interval_76133 chr17 75380449 75381084 + 0 NA intron (ENSMUSG00000001870.16, intron 32 of 34) protein_coding-intron (ENSMUSG00000001870.16, intron 31 of 33) -55130 ENSMUSG00000071042.12 ENSMUSG00000071042 ENSMUST00000234011 Rasgrp3 protein_coding Interval_77608 chr17 92991478 92991852 + 0 NA Intergenic Intergenic 15144 ENSMUSG00000117409.1 ENSMUSG00000117409 ENSMUST00000234475 Gm49996 processed_pseudogene Interval_147578 chr7 68472605 68473670 + 0 NA intron (ENSMUSG00000108828.1, intron 4 of 6) lincRNA-intron (ENSMUSG00000108828.1, intron 4 of 6) 33764 ENSMUSG00000109298.1 ENSMUSG00000109298 ENSMUST00000209009 Gm44886 lincRNA Interval_32292 chr11 106714913 106716076 + 0 NA promoter-TSS (ENSMUSG00000020717.19) protein_coding-promoter-TSS (ENSMUSG00000020717.19) -35771 ENSMUSG00000040528.15 ENSMUSG00000040528 ENSMUST00000182479 Milr1 protein_coding Interval_14441 chr10 33792260 33793102 + 0 NA Intergenic Intergenic -5977 ENSMUSG00000090298.2 ENSMUSG00000090298 ENSMUST00000223295 Sult3a2 protein_coding Interval_21184 chr10 127097929 127098823 + 0 NA exon (ENSMUSG00000040462.13, exon 11 of 14) protein_coding-exon (ENSMUSG00000040462.13, exon 11 of 14) 22739 ENSMUSG00000040462.13 ENSMUSG00000040462 ENSMUST00000218798 Os9 protein_coding Interval_158444 chr8 83764298 83764947 + 0 NA Intergenic Intergenic 11704 ENSMUSG00000084682.1 ENSMUSG00000084682 ENSMUST00000122733 Gm22024 misc_RNA Interval_153512 chr7 145314196 145315753 + 0 NA exon (ENSMUSG00000051207.7, exon 1 of 2) protein_coding-exon (ENSMUSG00000051207.7, exon 1 of 2) 139 ENSMUSG00000051207.7 ENSMUSG00000051207 ENSMUST00000062163 Mrgprd protein_coding Interval_156896 chr8 61531874 61534012 + 0 NA intron (ENSMUSG00000058056.16, intron 1 of 2) protein_coding-intron (ENSMUSG00000058056.16, intron 13 of 19) -17043 ENSMUSG00000058056.16 ENSMUSG00000058056 ENSMUST00000123523 Palld protein_coding Interval_94560 chr2 92236715 92237003 + 0 NA intron (ENSMUSG00000058318.15, intron 6 of 6) protein_coding-intron (ENSMUSG00000058318.15, intron 4 of 15) 3754 ENSMUSG00000083951.1 ENSMUSG00000083951 ENSMUST00000122371 Gm13786 processed_pseudogene Interval_60878 chr15 77326275 77326615 + 0 NA Intergenic Intergenic 40254 ENSMUSG00000116413.1 ENSMUSG00000116413 ENSMUST00000230034 Gm49436 TEC Interval_102072 chr3 16466449 16466900 + 0 NA Intergenic Intergenic 283438 ENSMUSG00000047213.14 ENSMUSG00000047213 ENSMUST00000108346 Ythdf3 protein_coding Interval_137293 chr6 71124858 71125693 + 0 NA TTS (ENSMUSG00000068396.9) processed_pseudogene-TTS (ENSMUSG00000068396.9) 665 ENSMUSG00000068396.9 ENSMUSG00000068396 ENSMUST00000121998 Rpl34-ps1 processed_pseudogene Interval_93759 chr2 76664517 76665048 + 0 NA TTS (ENSMUSG00000002732.14) protein_coding-TTS (ENSMUSG00000002732.14) 8334 ENSMUSG00000002732.14 ENSMUSG00000002732 ENSMUST00000147355 Fkbp7 protein_coding Interval_148635 chr7 83640875 83641092 + 0 NA exon (ENSMUSG00000046027.17, exon 6 of 6) protein_coding-exon (ENSMUSG00000046027.17, exon 6 of 6) 7612 ENSMUSG00000108825.1 ENSMUSG00000108825 ENSMUST00000207355 Gm45838 TEC Interval_5908 chr1 93159985 93161568 + 0 NA promoter-TSS (ENSMUSG00000034159.12) protein_coding-promoter-TSS (ENSMUSG00000034159.12) 94 ENSMUSG00000034159.12 ENSMUSG00000034159 ENSMUST00000143419 Mab21l4 protein_coding Interval_87311 chr19 47560695 47561173 + 0 NA Intergenic Intergenic -23910 ENSMUSG00000042694.17 ENSMUSG00000042694 ENSMUST00000183283 Stn1 protein_coding Interval_58303 chr15 32048762 32049003 + 0 NA Intergenic Intergenic -1069 ENSMUSG00000115561.1 ENSMUSG00000115561 ENSMUST00000227417 Gm49285 TEC Interval_70717 chr17 13829722 13831117 + 0 NA intron (ENSMUSG00000068036.16, intron 10 of 32) protein_coding-intron (ENSMUSG00000068036.16, intron 10 of 18) 32384 ENSMUSG00000089883.1 ENSMUSG00000089883 ENSMUST00000160079 Gm3355 processed_pseudogene Interval_83449 chr18 85633331 85633992 + 0 NA Intergenic Intergenic 83064 ENSMUSG00000117854.1 ENSMUSG00000117854 ENSMUST00000237113 Gm7612 processed_pseudogene Interval_162390 chr8 127779667 127780057 + 0 NA Intergenic Intergenic 182156 ENSMUSG00000088580.1 ENSMUSG00000088580 ENSMUST00000157955 Gm22968 rRNA Interval_27744 chr11 69750835 69751521 + 0 NA intron (ENSMUSG00000005198.15, intron 1 of 27) protein_coding-intron (ENSMUSG00000005198.15, intron 1 of 28) 10666 ENSMUSG00000018776.10 ENSMUSG00000018776 ENSMUST00000102586 Slc35g3 protein_coding Interval_141889 chr6 135156505 135157007 + 0 NA intron (ENSMUSG00000042770.8, intron 1 of 1) protein_coding-intron (ENSMUSG00000042770.8, intron 1 of 3) 8108 ENSMUSG00000088372.1 ENSMUSG00000088372 ENSMUST00000157747 Gm22881 snoRNA Interval_39163 chr12 85523814 85525711 + 0 NA Intergenic Intergenic -4836 ENSMUSG00000114163.1 ENSMUSG00000114163 ENSMUST00000220590 Gm32296 lincRNA Interval_164060 chr9 31229847 31230037 + 0 NA Intergenic Intergenic -44879 ENSMUSG00000091003.2 ENSMUSG00000091003 ENSMUST00000164658 Gm7244 processed_pseudogene Interval_148375 chr7 80856955 80857807 + 0 NA Intergenic Intergenic -3570 ENSMUSG00000038797.13 ENSMUSG00000038797 ENSMUST00000155128 Zscan2 protein_coding Interval_135969 chr6 49150743 49152152 + 0 NA intron (ENSMUSG00000029814.10, intron 3 of 9) protein_coding-intron (ENSMUSG00000029814.10, intron 3 of 14) -21312 ENSMUSG00000107727.1 ENSMUSG00000107727 ENSMUST00000203553 Gm18010 processed_pseudogene Interval_75253 chr17 65425425 65425624 + 0 NA intron (ENSMUSG00000045036.15, intron 9 of 12) protein_coding-intron (ENSMUSG00000045036.15, intron 12 of 15) -1954 ENSMUSG00000117299.1 ENSMUSG00000117299 ENSMUST00000233191 Gm9288 processed_pseudogene Interval_97266 chr2 132750843 132751133 + 0 NA TTS (ENSMUSG00000044991.10) protein_coding-TTS (ENSMUSG00000044991.10) -30290 ENSMUSG00000027350.8 ENSMUSG00000027350 ENSMUST00000028826 Chgb protein_coding Interval_36496 chr12 46399054 46400072 + 0 NA Intergenic Intergenic 79764 ENSMUSG00000112811.1 ENSMUSG00000112811 ENSMUST00000220115 Gm7422 processed_pseudogene Interval_167068 chr9 65020837 65022867 + 0 NA promoter-TSS (ENSMUSG00000033629.6) protein_coding-promoter-TSS (ENSMUSG00000033629.6) -159 ENSMUSG00000033629.6 ENSMUSG00000033629 ENSMUST00000036615 Hacd3 protein_coding Interval_86060 chr19 36114653 36115375 + 0 NA exon (ENSMUSG00000024803.9, exon 8 of 9) protein_coding-exon (ENSMUSG00000024803.9, exon 8 of 9) 4896 ENSMUSG00000024803.9 ENSMUSG00000024803 ENSMUST00000235221 Ankrd1 protein_coding Interval_94735 chr2 93878949 93879571 + 0 NA Intergenic Intergenic -22528 ENSMUSG00000075023.11 ENSMUSG00000075023 ENSMUST00000128995 Accsl protein_coding Interval_95833 chr2 117053119 117053840 + 0 NA Intergenic Intergenic -2087 ENSMUSG00000074930.5 ENSMUSG00000074930 ENSMUST00000122360 Gm13981 processed_pseudogene Interval_58400 chr15 34160532 34161389 + 0 NA Intergenic Intergenic -21584 ENSMUSG00000089072.1 ENSMUSG00000089072 ENSMUST00000158447 Gm24500 snoRNA Interval_148360 chr7 80758532 80759035 + 0 NA TTS (ENSMUSG00000108321.1) antisense-TTS (ENSMUSG00000108321.1) 6961 ENSMUSG00000108321.1 ENSMUSG00000108321 ENSMUST00000205608 Gm44649 antisense Interval_130272 chr5 125348270 125349583 + 0 NA Intergenic Intergenic -12249 ENSMUSG00000104932.1 ENSMUSG00000104932 ENSMUST00000200649 Gm40323 lincRNA Interval_123477 chr5 32785060 32786169 + 0 NA promoter-TSS (ENSMUSG00000023452.19) protein_coding-promoter-TSS (ENSMUSG00000023452.19) 15351 ENSMUSG00000105429.1 ENSMUSG00000105429 ENSMUST00000198236 Gm43692 TEC Interval_117164 chr4 120163119 120163725 + 0 NA exon (ENSMUSG00000028635.7, exon 3 of 5) protein_coding-exon (ENSMUSG00000028635.7, exon 3 of 5) 2216 ENSMUSG00000028635.7 ENSMUSG00000028635 ENSMUST00000030384 Edn2 protein_coding Interval_120712 chr4 150230732 150231373 + 0 NA Intergenic Intergenic 3017 ENSMUSG00000082140.1 ENSMUSG00000082140 ENSMUST00000117930 Gm13094 processed_pseudogene Interval_24455 chr11 33405135 33405394 + 0 NA intron (ENSMUSG00000040594.19, intron 14 of 20) protein_coding-intron (ENSMUSG00000040594.19, intron 14 of 27) -9998 ENSMUSG00000069913.3 ENSMUSG00000069913 ENSMUST00000118265 Anp32-ps processed_pseudogene Interval_167317 chr9 67275295 67275863 + 0 NA intron (ENSMUSG00000052698.15, intron 16 of 31) protein_coding-intron (ENSMUSG00000052698.15, intron 42 of 57) -38853 ENSMUSG00000076379.2 ENSMUSG00000076379 ENSMUST00000102424 Mir190a miRNA Interval_23098 chr11 19944644 19945227 + 0 NA intron (ENSMUSG00000045671.17, intron 1 of 6) protein_coding-intron (ENSMUSG00000045671.17, intron 1 of 5) -9635 ENSMUSG00000045671.17 ENSMUSG00000045671 ENSMUST00000123036 Spred2 protein_coding Interval_21358 chr10 128140106 128140857 + 0 NA intron (ENSMUSG00000040043.17, intron 6 of 14) protein_coding-intron (ENSMUSG00000040043.17, intron 5 of 12) 39816 ENSMUSG00000040043.17 ENSMUSG00000040043 ENSMUST00000218884 Rbms2 protein_coding Interval_168112 chr9 76815668 76815886 + 0 NA intron (ENSMUSG00000110839.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000110839.1, intron 1 of 2) 7285 ENSMUSG00000110839.1 ENSMUSG00000110839 ENSMUST00000214015 Gm47800 lincRNA Interval_151208 chr7 119666569 119667038 + 0 NA Intergenic Intergenic -23223 ENSMUSG00000047026.9 ENSMUSG00000047026 ENSMUST00000047045 Acsm4 protein_coding Interval_89491 chr2 21009884 21011189 + 0 NA Intergenic Intergenic 41482 ENSMUSG00000075514.4 ENSMUSG00000075514 ENSMUST00000126967 Gm13375 antisense Interval_174315 chrX 144335438 144336300 + 0 NA promoter-TSS (ENSMUSG00000041718.16) protein_coding-promoter-TSS (ENSMUSG00000041718.16) -14614 ENSMUSG00000080922.1 ENSMUSG00000080922 ENSMUST00000121333 Gm2214 processed_pseudogene Interval_61555 chr15 82306757 82307314 + 0 NA intron (ENSMUSG00000022455.4, intron 4 of 5) protein_coding-intron (ENSMUSG00000022455.4, intron 4 of 5) 8081 ENSMUSG00000022455.4 ENSMUSG00000022455 ENSMUST00000023089 Wbp2nl protein_coding Interval_98381 chr2 151977795 151980742 + 0 NA intron (ENSMUSG00000027459.16, intron 1 of 1) protein_coding-intron (ENSMUSG00000027459.16, intron 1 of 1) -5333 ENSMUSG00000027459.16 ENSMUSG00000027459 ENSMUST00000109863 Fam110a protein_coding Interval_166207 chr9 57494504 57495440 + 0 NA Intergenic Intergenic -9054 ENSMUSG00000062309.8 ENSMUSG00000062309 ENSMUST00000080514 Rpp25 protein_coding Interval_87590 chr19 53608291 53609510 + 0 NA intron (ENSMUSG00000024974.10, intron 2 of 28) protein_coding-intron (ENSMUSG00000024974.10, intron 2 of 28) -9489 ENSMUSG00000118159.1 ENSMUSG00000118159 ENSMUST00000236407 Gm50402 TEC Interval_135839 chr6 47824080 47824975 + 0 NA intron (ENSMUSG00000051499.7, intron 3 of 3) protein_coding-intron (ENSMUSG00000051499.7, intron 3 of 3) 5977 ENSMUSG00000051499.7 ENSMUSG00000051499 ENSMUST00000204984 Zfp786 protein_coding Interval_39331 chr12 86775767 86776310 + 0 NA Intergenic Intergenic -33919 ENSMUSG00000088403.1 ENSMUSG00000088403 ENSMUST00000157778 Gm25888 misc_RNA Interval_44137 chr13 41145124 41146907 + 0 NA intron (ENSMUSG00000038651.15, intron 14 of 28) protein_coding-intron (ENSMUSG00000038651.15, intron 14 of 28) -7373 ENSMUSG00000038651.15 ENSMUSG00000038651 ENSMUST00000145810 Sycp2l protein_coding Interval_137707 chr6 80839618 80839965 + 0 NA Intergenic Intergenic 12653 ENSMUSG00000108040.1 ENSMUSG00000108040 ENSMUST00000204868 Gm43900 TEC Interval_156414 chr8 47994626 47994953 + 0 NA Intergenic Intergenic -3865 ENSMUSG00000031563.8 ENSMUSG00000031563 ENSMUST00000212282 Wwc2 protein_coding Interval_147965 chr7 75927567 75928118 + 0 NA Intergenic Intergenic -72982 ENSMUSG00000108495.1 ENSMUSG00000108495 ENSMUST00000206543 Gm45139 TEC Interval_117869 chr4 126752460 126754280 + 0 NA promoter-TSS (ENSMUSG00000028833.13) protein_coding-promoter-TSS (ENSMUSG00000028833.13) 68 ENSMUSG00000028833.13 ENSMUSG00000028833 ENSMUST00000127079 Ncdn protein_coding Interval_27178 chr11 63844647 63845646 + 0 NA Intergenic Intergenic 1672 ENSMUSG00000081455.1 ENSMUSG00000081455 ENSMUST00000118415 Hmgb1-ps3 processed_pseudogene Interval_94448 chr2 91294186 91294793 + 0 NA intron (ENSMUSG00000040591.18, intron 4 of 8) protein_coding-intron (ENSMUSG00000040591.18, intron 4 of 8) 29155 ENSMUSG00000027255.14 ENSMUSG00000027255 ENSMUST00000127895 Arfgap2 protein_coding Interval_93465 chr2 73273197 73274787 + 0 NA exon (ENSMUSG00000068859.5, exon 2 of 2) protein_coding-exon (ENSMUSG00000068859.5, exon 2 of 2) 2026 ENSMUSG00000068859.5 ENSMUSG00000068859 ENSMUST00000147133 Sp9 protein_coding Interval_118681 chr4 133169382 133169991 + 0 NA intron (ENSMUSG00000028868.13, intron 2 of 2) protein_coding-intron (ENSMUSG00000028868.13, intron 1 of 8) 2028 ENSMUSG00000089298.1 ENSMUSG00000089298 ENSMUST00000158673 Gm24636 misc_RNA Interval_93486 chr2 73478859 73479101 + 0 NA intron (ENSMUSG00000075284.10, intron 1 of 7) protein_coding-intron (ENSMUSG00000075284.10, intron 1 of 7) 19275 ENSMUSG00000086069.1 ENSMUSG00000086069 ENSMUST00000145170 Gm13708 lincRNA Interval_30609 chr11 95445166 95445419 + 0 NA intron (ENSMUSG00000057522.15, intron 2 of 4) protein_coding-intron (ENSMUSG00000057522.15, intron 1 of 9) 17429 ENSMUSG00000083208.1 ENSMUSG00000083208 ENSMUST00000120533 Gm11522 processed_pseudogene Interval_102295 chr3 20988577 20988759 + 0 NA Intergenic Intergenic -60897 ENSMUSG00000039617.8 ENSMUSG00000039617 ENSMUST00000117148 Gm7488 processed_pseudogene Interval_43752 chr13 36020598 36021033 + 0 NA intron (ENSMUSG00000114407.1, intron 1 of 1) protein_coding-intron (ENSMUSG00000046573.7, intron 2 of 2) 25362 ENSMUSG00000114857.1 ENSMUSG00000114857 ENSMUST00000225071 Gm48770 antisense Interval_73089 chr17 34718551 34719173 + 0 NA TTS (ENSMUSG00000092471.1) unprocessed_pseudogene-TTS (ENSMUSG00000092471.1) 3390 ENSMUSG00000092471.1 ENSMUSG00000092471 ENSMUST00000172970 Cyp21a2-ps unprocessed_pseudogene Interval_80534 chr18 43477667 43478434 + 0 NA promoter-TSS (ENSMUSG00000043424.10) protein_coding-promoter-TSS (ENSMUSG00000043424.10) -254 ENSMUSG00000043424.10 ENSMUSG00000043424 ENSMUST00000057110 Eif3j2 protein_coding Interval_84638 chr19 14568198 14569267 + 0 NA intron (ENSMUSG00000024642.17, intron 2 of 3) protein_coding-intron (ENSMUSG00000024642.17, intron 4 of 19) 26807 ENSMUSG00000024642.17 ENSMUSG00000024642 ENSMUST00000235975 Tle4 protein_coding Interval_127496 chr5 104482155 104482996 + 0 NA intron (ENSMUSG00000034462.9, intron 5 of 8) protein_coding-intron (ENSMUSG00000034462.9, intron 5 of 14) -10196 ENSMUSG00000034462.9 ENSMUSG00000034462 ENSMUST00000133540 Pkd2 protein_coding Interval_105177 chr3 83260212 83260850 + 0 NA intron (ENSMUSG00000102692.1, intron 3 of 19) protein_coding-intron (ENSMUSG00000102692.1, intron 3 of 19) -131285 ENSMUSG00000074517.2 ENSMUSG00000074517 ENSMUST00000047876 Gm10710 lincRNA Interval_128416 chr5 113215421 113216221 + 0 NA intron (ENSMUSG00000051339.10, intron 1 of 12) protein_coding-intron (ENSMUSG00000051339.10, intron 1 of 12) -11088 ENSMUSG00000066964.2 ENSMUSG00000066964 ENSMUST00000086615 Tmem211 protein_coding Interval_91041 chr2 34639053 34639857 + 0 NA Intergenic Intergenic 10785 ENSMUSG00000087635.3 ENSMUSG00000087635 ENSMUST00000117516 Gm13414 processed_pseudogene Interval_42557 chr13 15445837 15446141 + 0 NA intron (ENSMUSG00000097806.3, intron 1 of 2) processed_transcript-intron (ENSMUSG00000097806.3, intron 1 of 2) 15306 ENSMUSG00000097684.1 ENSMUSG00000097684 ENSMUST00000181076 Gm26645 lincRNA Interval_12586 chr10 3574062 3574695 + 0 NA Intergenic Intergenic 34090 ENSMUSG00000019762.4 ENSMUSG00000019762 ENSMUST00000141745 Iyd protein_coding Interval_18911 chr10 93060140 93060614 + 0 NA TTS (ENSMUSG00000020014.17) protein_coding-TTS (ENSMUSG00000020014.17) -24874 ENSMUSG00000111013.1 ENSMUSG00000111013 ENSMUST00000214288 Gm32468 lincRNA Interval_164631 chr9 40211876 40212260 + 0 NA exon (ENSMUSG00000025602.13, exon 7 of 7) protein_coding-exon (ENSMUSG00000025602.13, exon 7 of 7) 19739 ENSMUSG00000025602.13 ENSMUSG00000025602 ENSMUST00000168832 Zfp202 protein_coding Interval_101384 chr2 180938395 180938749 + 0 NA intron (ENSMUSG00000027574.15, intron 1 of 2) protein_coding-intron (ENSMUSG00000027574.15, intron 4 of 6) 4505 ENSMUSG00000027574.15 ENSMUSG00000027574 ENSMUST00000137274 Nkain4 protein_coding Interval_82918 chr18 79096922 79097235 + 0 NA intron (ENSMUSG00000024548.11, intron 1 of 5) protein_coding-intron (ENSMUSG00000024548.11, intron 1 of 5) 12313 ENSMUSG00000024548.11 ENSMUSG00000024548 ENSMUST00000025430 Setbp1 protein_coding Interval_10234 chr1 167374039 167374941 + 0 NA intron (ENSMUSG00000026688.5, intron 4 of 5) protein_coding-intron (ENSMUSG00000026688.5, intron 4 of 5) 19351 ENSMUSG00000026688.5 ENSMUSG00000026688 ENSMUST00000028005 Mgst3 protein_coding Interval_58507 chr15 35300134 35301527 + 0 NA exon (ENSMUSG00000022330.5, exon 2 of 4) protein_coding-exon (ENSMUSG00000022330.5, exon 2 of 4) 4719 ENSMUSG00000022330.5 ENSMUSG00000022330 ENSMUST00000228152 Osr2 protein_coding Interval_155983 chr8 41437375 41437868 + 0 NA Intergenic Intergenic -24699 ENSMUSG00000031590.8 ENSMUSG00000031590 ENSMUST00000210873 Frg1 protein_coding Interval_153331 chr7 143666432 143667564 + 0 NA TTS (ENSMUSG00000037613.16) protein_coding-TTS (ENSMUSG00000037613.16) 18874 ENSMUSG00000037613.16 ENSMUSG00000037613 ENSMUST00000208613 Tnfrsf23 protein_coding Interval_152217 chr7 130711820 130712519 + 0 NA intron (ENSMUSG00000030852.18, intron 1 of 17) protein_coding-intron (ENSMUSG00000030852.18, intron 1 of 17) -1508 ENSMUSG00000030852.18 ENSMUSG00000030852 ENSMUST00000207230 Tacc2 protein_coding Interval_108208 chr3 122486149 122486558 + 0 NA intron (ENSMUSG00000028121.8, intron 1 of 2) protein_coding-intron (ENSMUSG00000028121.8, intron 3 of 11) 21626 ENSMUSG00000087743.1 ENSMUSG00000087743 ENSMUST00000157118 Gm25153 snRNA Interval_167142 chr9 65617758 65618260 + 0 NA Intergenic Intergenic 30804 ENSMUSG00000041064.14 ENSMUSG00000041064 ENSMUST00000141046 Pif1 protein_coding Interval_41682 chr12 117702117 117702749 + 0 NA intron (ENSMUSG00000041992.9, intron 1 of 2) protein_coding-intron (ENSMUSG00000041992.9, intron 13 of 27) 13477 ENSMUSG00000041992.9 ENSMUSG00000041992 ENSMUST00000222035 Rapgef5 protein_coding Interval_166254 chr9 57813962 57814471 + 0 NA intron (ENSMUSG00000004661.15, intron 2 of 8) protein_coding-intron (ENSMUSG00000004661.15, intron 1 of 7) -17995 ENSMUSG00000004661.15 ENSMUSG00000004661 ENSMUST00000167670 Arid3b protein_coding Interval_160529 chr8 110423865 110424123 + 0 NA intron (ENSMUSG00000059854.8, intron 19 of 25) protein_coding-intron (ENSMUSG00000059854.8, intron 19 of 86) -2527 ENSMUSG00000064393.1 ENSMUSG00000064393 ENSMUST00000082459 Gm23627 snRNA Interval_88914 chr2 12803337 12803913 + 0 NA Intergenic Intergenic 106208 ENSMUSG00000104045.1 ENSMUSG00000104045 ENSMUST00000192277 Gm37565 lincRNA Interval_122864 chr5 26443998 26445120 + 0 NA Intergenic Intergenic 48730 ENSMUSG00000029044.9 ENSMUSG00000029044 ENSMUST00000196508 4930584F24Rik lincRNA Interval_162125 chr8 125348037 125348418 + 0 NA Intergenic Intergenic -120904 ENSMUSG00000086694.1 ENSMUSG00000086694 ENSMUST00000156666 Gm16237 antisense Interval_162271 chr8 126582604 126585020 + 0 NA intron (ENSMUSG00000097060.1, intron 2 of 2) antisense-intron (ENSMUSG00000097060.1, intron 2 of 2) 10174 ENSMUSG00000051495.7 ENSMUSG00000051495 ENSMUST00000054960 Irf2bp2 protein_coding Interval_147755 chr7 73386651 73386952 + 0 NA intron (ENSMUSG00000070509.15, intron 1 of 2) protein_coding-intron (ENSMUSG00000070509.15, intron 1 of 3) -4475 ENSMUSG00000070509.15 ENSMUSG00000070509 ENSMUST00000206253 Rgma protein_coding Interval_70044 chr17 4964102 4964995 + 0 NA Intergenic Intergenic -17734 ENSMUSG00000116551.1 ENSMUSG00000116551 ENSMUST00000232522 Gm41517 lincRNA Interval_49994 chr13 119418994 119420933 + 0 NA Intergenic Intergenic -9195 ENSMUSG00000025451.15 ENSMUSG00000025451 ENSMUST00000173339 Paip1 protein_coding Interval_36481 chr12 45655066 45655800 + 0 NA Intergenic Intergenic 16360 ENSMUSG00000112604.1 ENSMUSG00000112604 ENSMUST00000217744 Gm48518 TEC Interval_6671 chr1 118656403 118656708 + 0 NA intron (ENSMUSG00000026380.10, intron 6 of 14) protein_coding-intron (ENSMUSG00000026380.10, intron 6 of 14) -4760 ENSMUSG00000101624.1 ENSMUSG00000101624 ENSMUST00000185504 Gm28882 processed_pseudogene Interval_18120 chr10 82798494 82798934 + 0 NA Intergenic Intergenic -13409 ENSMUSG00000056821.13 ENSMUSG00000056821 ENSMUST00000076984 1700028I16Rik lincRNA Interval_173742 chrX 103370998 103371869 + 0 NA intron (ENSMUSG00000031327.10, intron 2 of 5) protein_coding-intron (ENSMUSG00000031327.10, intron 2 of 5) 11736 ENSMUSG00000097953.1 ENSMUSG00000097953 ENSMUST00000181996 Gm26952 antisense Interval_171242 chr9 115562509 115562812 + 0 NA Intergenic Intergenic 64058 ENSMUSG00000094630.1 ENSMUSG00000094630 ENSMUST00000082810 n-R5s92 rRNA Interval_153941 chr8 11392573 11393574 + 0 NA intron (ENSMUSG00000031503.13, intron 4 of 47) protein_coding-intron (ENSMUSG00000031503.13, intron 4 of 47) 24819 ENSMUSG00000084783.1 ENSMUSG00000084783 ENSMUST00000148654 Gm15419 antisense Interval_70721 chr17 13853788 13855912 + 0 NA TTS (ENSMUSG00000068036.16) protein_coding-TTS (ENSMUSG00000068036.16) 7953 ENSMUSG00000089883.1 ENSMUSG00000089883 ENSMUST00000160079 Gm3355 processed_pseudogene Interval_7971 chr1 134949881 134950099 + 0 NA intron (ENSMUSG00000073557.12, intron 1 of 2) protein_coding-intron (ENSMUSG00000073557.12, intron 1 of 23) -12628 ENSMUSG00000026429.9 ENSMUSG00000026429 ENSMUST00000139617 Ube2t protein_coding Interval_114909 chr4 86873800 86874915 + 0 NA promoter-TSS (ENSMUSG00000038007.14) protein_coding-promoter-TSS (ENSMUSG00000038007.14) -17012 ENSMUSG00000028495.14 ENSMUSG00000028495 ENSMUST00000130001 Rps6 protein_coding Interval_130849 chr5 132568239 132568502 + 0 NA Intergenic Intergenic 22314 ENSMUSG00000105809.1 ENSMUSG00000105809 ENSMUST00000196866 Gm42626 lincRNA Interval_127172 chr5 100811088 100811343 + 0 NA intron (ENSMUSG00000035234.18, intron 5 of 9) protein_coding-intron (ENSMUSG00000035234.18, intron 5 of 9) 4070 ENSMUSG00000105607.1 ENSMUSG00000105607 ENSMUST00000199779 Gm43513 TEC Interval_33433 chr11 116515348 116516015 + 0 NA Intergenic Intergenic 11145 ENSMUSG00000081318.1 ENSMUSG00000081318 ENSMUST00000119508 Rpl36-ps1 processed_pseudogene Interval_108428 chr3 127068361 127068548 + 0 NA intron (ENSMUSG00000032826.19, intron 4 of 10) protein_coding-intron (ENSMUSG00000032826.19, intron 6 of 14) -16408 ENSMUSG00000105322.1 ENSMUSG00000105322 ENSMUST00000200275 Gm43751 TEC Interval_45461 chr13 55269534 55269839 + 0 NA intron (ENSMUSG00000021488.8, intron 7 of 20) protein_coding-intron (ENSMUSG00000021488.8, intron 9 of 22) -15285 ENSMUSG00000114359.1 ENSMUSG00000114359 ENSMUST00000224833 Gm47816 processed_pseudogene Interval_71570 chr17 24615496 24615804 + 0 NA intron (ENSMUSG00000002496.10, intron 16 of 39) protein_coding-intron (ENSMUSG00000002496.10, intron 16 of 39) -9140 ENSMUSG00000002496.10 ENSMUSG00000002496 ENSMUST00000227509 Tsc2 protein_coding Interval_121439 chr4 155811896 155813129 + 0 NA promoter-TSS (ENSMUSG00000029068.16) protein_coding-promoter-TSS (ENSMUSG00000029068.16) 11 ENSMUSG00000029068.16 ENSMUSG00000029068 ENSMUST00000126346 Ccnl2 protein_coding Interval_120816 chr4 150794431 150794982 + 0 NA Intergenic Intergenic -31027 ENSMUSG00000085097.1 ENSMUSG00000085097 ENSMUST00000133196 Gm13049 lincRNA Interval_78191 chr18 10013815 10014665 + 0 NA intron (ENSMUSG00000047879.17, intron 5 of 5) protein_coding-intron (ENSMUSG00000047879.17, intron 5 of 15) 27951 ENSMUSG00000024287.8 ENSMUSG00000024287 ENSMUST00000234111 Thoc1 protein_coding Interval_157062 chr8 64887091 64887851 + 0 NA Intergenic Intergenic 24506 ENSMUSG00000109613.1 ENSMUSG00000109613 ENSMUST00000211544 Gm45405 processed_pseudogene Interval_36952 chr12 55559642 55560673 + 0 NA Intergenic Intergenic -5082 ENSMUSG00000063129.1 ENSMUSG00000063129 ENSMUST00000080123 Aldoart2 protein_coding Interval_162528 chr9 3933926 3934488 + 0 NA Intergenic Intergenic -279715 ENSMUSG00000110691.1 ENSMUSG00000110691 ENSMUST00000211927 Gm5363 processed_pseudogene Interval_71955 chr17 27203447 27205051 + 0 NA promoter-TSS (ENSMUSG00000044857.8) protein_coding-promoter-TSS (ENSMUSG00000044857.8) 3217 ENSMUSG00000097090.1 ENSMUSG00000097090 ENSMUST00000180434 Gm26724 antisense Interval_63929 chr16 4618867 4620087 + 0 NA intron (ENSMUSG00000014301.13, intron 1 of 4) protein_coding-intron (ENSMUSG00000014301.13, intron 1 of 4) 5429 ENSMUSG00000014301.13 ENSMUSG00000014301 ENSMUST00000229767 Pam16 protein_coding Interval_103788 chr3 52973362 52975573 + 0 NA Intergenic Intergenic -14101 ENSMUSG00000103886.1 ENSMUSG00000103886 ENSMUST00000194234 Gm37007 processed_pseudogene Interval_166355 chr9 58556983 58557692 + 0 NA Intergenic Intergenic 2538 ENSMUSG00000103486.1 ENSMUSG00000103486 ENSMUST00000193528 Gm10657 TEC Interval_7882 chr1 134351945 134352159 + 0 NA intron (ENSMUSG00000042305.12, intron 7 of 8) protein_coding-intron (ENSMUSG00000042305.12, intron 6 of 7) 9889 ENSMUSG00000042305.12 ENSMUSG00000042305 ENSMUST00000185903 Tmem183a protein_coding Interval_150361 chr7 109892355 109892999 + 0 NA Intergenic Intergenic 4879 ENSMUSG00000035901.14 ENSMUSG00000035901 ENSMUST00000151923 Dennd5a protein_coding Interval_163889 chr9 27654440 27655190 + 0 NA Intergenic Intergenic 38630 ENSMUSG00000110851.1 ENSMUSG00000110851 ENSMUST00000213224 Gm48902 lincRNA Interval_53275 chr14 55733875 55734160 + 0 NA Intergenic Intergenic 5643 ENSMUSG00000002332.16 ENSMUSG00000002332 ENSMUST00000142043 Dhrs1 protein_coding Interval_80361 chr18 40110767 40111085 + 0 NA Intergenic Intergenic -1193 ENSMUSG00000118042.1 ENSMUSG00000118042 ENSMUST00000235427 Gm50395 lincRNA Interval_95796 chr2 116527525 116527720 + 0 NA TTS (ENSMUSG00000081787.1) processed_pseudogene-TTS (ENSMUSG00000081787.1) 868 ENSMUSG00000081787.1 ENSMUSG00000081787 ENSMUST00000120190 Gm13991 processed_pseudogene Interval_116770 chr4 117201874 117203313 + 0 NA promoter-TSS (ENSMUSG00000094405.1) snRNA-promoter-TSS (ENSMUSG00000094405.1) 65 ENSMUSG00000094405.1 ENSMUSG00000094405 ENSMUST00000180137 Gm23143 snRNA Interval_49802 chr13 115773115 115773299 + 0 NA Intergenic Intergenic 2271 ENSMUSG00000114324.1 ENSMUSG00000114324 ENSMUST00000224201 Gm18135 processed_pseudogene Interval_4594 chr1 75329794 75330420 + 0 NA Intergenic Intergenic -12660 ENSMUSG00000026209.15 ENSMUSG00000026209 ENSMUST00000189282 Dnpep protein_coding Interval_21572 chr10 130110474 130110784 + 0 NA TTS (ENSMUSG00000096747.2) protein_coding-TTS (ENSMUSG00000096747.2) 4754 ENSMUSG00000096747.2 ENSMUSG00000096747 ENSMUST00000081469 Olfr823 protein_coding Interval_83556 chr18 89333524 89333828 + 0 NA intron (ENSMUSG00000073514.4, intron 7 of 7) protein_coding-intron (ENSMUSG00000073514.4, intron 7 of 7) 45941 ENSMUSG00000118274.1 ENSMUSG00000118274 ENSMUST00000236207 Gm50204 processed_pseudogene Interval_67160 chr16 44067436 44067765 + 0 NA Intergenic Intergenic -6055 ENSMUSG00000036292.14 ENSMUSG00000036292 ENSMUST00000214764 Gramd1c protein_coding Interval_42718 chr13 18500879 18501154 + 0 NA Intergenic Intergenic -103330 ENSMUSG00000009734.18 ENSMUSG00000009734 ENSMUST00000222900 Pou6f2 protein_coding Interval_19152 chr10 95162434 95163564 + 0 NA exon (ENSMUSG00000112682.1, exon 1 of 1) TEC-exon (ENSMUSG00000112682.1, exon 1 of 1) 2638 ENSMUSG00000112682.1 ENSMUSG00000112682 ENSMUST00000220149 Gm48874 TEC Interval_19020 chr10 93833324 93835327 + 0 NA intron (ENSMUSG00000020020.8, intron 1 of 5) protein_coding-intron (ENSMUSG00000020020.8, intron 1 of 3) 507 ENSMUSG00000020020.8 ENSMUSG00000020020 ENSMUST00000216224 Usp44 protein_coding Interval_80177 chr18 38041710 38042964 + 0 NA intron (ENSMUSG00000118056.1, intron 3 of 3) lincRNA-intron (ENSMUSG00000118056.1, intron 3 of 3) 18808 ENSMUSG00000118056.1 ENSMUSG00000118056 ENSMUST00000236681 Gm30093 lincRNA Interval_19650 chr10 107036704 107037130 + 0 NA intron (ENSMUSG00000035948.13, intron 5 of 15) protein_coding-intron (ENSMUSG00000035948.13, intron 5 of 10) 22432 ENSMUSG00000112849.1 ENSMUSG00000112849 ENSMUST00000217922 Gm18040 processed_pseudogene Interval_42737 chr13 18760902 18761127 + 0 NA intron (ENSMUSG00000041236.8, intron 4 of 28) protein_coding-intron (ENSMUSG00000041236.8, intron 4 of 28) -18829 ENSMUSG00000041236.8 ENSMUSG00000041236 ENSMUST00000222102 Vps41 protein_coding Interval_68739 chr16 85276901 85277255 + 0 NA Intergenic Intergenic 108229 ENSMUSG00000098604.1 ENSMUSG00000098604 ENSMUST00000184264 Gm27295 snoRNA Interval_86749 chr19 43606042 43607349 + 0 NA Intergenic Intergenic 3930 ENSMUSG00000092250.1 ENSMUSG00000092250 ENSMUST00000172872 Gm20467 lincRNA Interval_9079 chr1 153467112 153467321 + 0 NA intron (ENSMUSG00000042699.11, intron 10 of 14) protein_coding-intron (ENSMUSG00000042699.11, intron 14 of 27) 10923 ENSMUSG00000042699.11 ENSMUSG00000042699 ENSMUST00000189425 Dhx9 protein_coding Interval_37216 chr12 60584976 60585279 + 0 NA Intergenic Intergenic -36889 ENSMUSG00000113678.1 ENSMUSG00000113678 ENSMUST00000222270 Gm6068 processed_pseudogene Interval_174050 chrX 133270302 133270771 + 0 NA Intergenic Intergenic 60050 ENSMUSG00000083858.1 ENSMUSG00000083858 ENSMUST00000121561 Gm14979 processed_pseudogene Interval_134921 chr6 33620476 33622623 + 0 NA intron (ENSMUSG00000029763.17, intron 10 of 12) protein_coding-intron (ENSMUSG00000029763.17, intron 10 of 17) 70605 ENSMUSG00000107103.1 ENSMUSG00000107103 ENSMUST00000202529 Gm43164 TEC Interval_107757 chr3 113244601 113244846 + 0 NA Intergenic Intergenic 13928 ENSMUSG00000074268.4 ENSMUSG00000074268 ENSMUST00000144352 Amy2a5 protein_coding Interval_92610 chr2 61461185 61461491 + 0 NA Intergenic Intergenic -31428 ENSMUSG00000088340.1 ENSMUSG00000088340 ENSMUST00000157715 Gm22338 snoRNA Interval_19698 chr10 108175451 108175818 + 0 NA intron (ENSMUSG00000019907.10, intron 1 of 24) protein_coding-intron (ENSMUSG00000019907.10, intron 1 of 25) -33202 ENSMUSG00000112401.1 ENSMUSG00000112401 ENSMUST00000219675 Gm47999 processed_pseudogene Interval_113792 chr4 58643301 58644090 + 0 NA Intergenic Intergenic 14897 ENSMUSG00000086470.1 ENSMUSG00000086470 ENSMUST00000127456 Gm12580 lincRNA Interval_132296 chr5 143996382 143997213 + 0 NA intron (ENSMUSG00000029617.10, intron 3 of 4) protein_coding-intron (ENSMUSG00000029617.10, intron 10 of 14) 7362 ENSMUSG00000029617.10 ENSMUSG00000029617 ENSMUST00000199922 Ccz1 protein_coding Interval_153238 chr7 142709644 142709973 + 0 NA intron (ENSMUSG00000000215.11, intron 3 of 4) protein_coding-intron (ENSMUSG00000000215.11, intron 3 of 4) 33573 ENSMUSG00000000215.11 ENSMUSG00000000215 ENSMUST00000162317 Ins2 protein_coding Interval_157759 chr8 72794000 72794213 + 0 NA Intergenic Intergenic 1381 ENSMUSG00000110563.1 ENSMUSG00000110563 ENSMUST00000212908 Gm45791 processed_pseudogene Interval_58349 chr15 33021910 33022796 + 0 NA intron (ENSMUSG00000022261.6, intron 2 of 4) protein_coding-intron (ENSMUSG00000022261.6, intron 2 of 4) 51170 ENSMUSG00000115140.1 ENSMUSG00000115140 ENSMUST00000226619 Gm32764 lincRNA Interval_94963 chr2 102205609 102206296 + 0 NA Intergenic Intergenic 4427 ENSMUSG00000081774.1 ENSMUSG00000081774 ENSMUST00000118901 Gm13866 processed_pseudogene Interval_89537 chr2 22038442 22039233 + 0 NA Intergenic Intergenic -28989 ENSMUSG00000081467.1 ENSMUSG00000081467 ENSMUST00000119183 Gm13337 processed_pseudogene Interval_69347 chr16 92382674 92383669 + 0 NA promoter-TSS (ENSMUSG00000116693.1) lincRNA-promoter-TSS (ENSMUSG00000116693.1) -488 ENSMUSG00000116693.1 ENSMUSG00000116693 ENSMUST00000232607 Gm29805 lincRNA Interval_83733 chr19 4263074 4264042 + 0 NA TTS (ENSMUSG00000099290.1) miRNA-TTS (ENSMUSG00000099290.1) 320 ENSMUSG00000099290.1 ENSMUSG00000099290 ENSMUST00000184641 Mir6985 miRNA Interval_9061 chr1 153347673 153348502 + 0 NA Intergenic Intergenic 42655 ENSMUSG00000079138.3 ENSMUSG00000079138 ENSMUST00000110797 Gm8818 processed_pseudogene Interval_96474 chr2 124465226 124465467 + 0 NA intron (ENSMUSG00000027200.17, intron 4 of 20) protein_coding-intron (ENSMUSG00000027200.17, intron 4 of 20) -243015 ENSMUSG00000086954.1 ENSMUSG00000086954 ENSMUST00000136658 4930583P06Rik lincRNA Interval_37628 chr12 70543954 70544617 + 0 NA exon (ENSMUSG00000113302.1, exon 5 of 5) lincRNA-exon (ENSMUSG00000113302.1, exon 5 of 5) 21687 ENSMUSG00000113302.1 ENSMUSG00000113302 ENSMUST00000221234 Gm32219 lincRNA Interval_4293 chr1 72426122 72429241 + 0 NA exon (ENSMUSG00000039372.5, exon 4 of 4) protein_coding-exon (ENSMUSG00000039372.5, exon 4 of 4) -31818 ENSMUSG00000085812.1 ENSMUSG00000085812 ENSMUST00000146593 Gm15843 processed_pseudogene Interval_57570 chr15 12441759 12442095 + 0 NA intron (ENSMUSG00000022197.16, intron 4 of 23) protein_coding-intron (ENSMUSG00000022197.16, intron 4 of 23) -29547 ENSMUSG00000022197.16 ENSMUSG00000022197 ENSMUST00000189746 Pdzd2 protein_coding Interval_26079 chr11 53997803 53998076 + 0 NA intron (ENSMUSG00000020334.6, intron 2 of 4) protein_coding-intron (ENSMUSG00000020334.6, intron 3 of 9) -28336 ENSMUSG00000063652.10 ENSMUSG00000063652 ENSMUST00000143352 Slc22a21 protein_coding Interval_87666 chr19 54107133 54107922 + 0 NA Intergenic Intergenic 22968 ENSMUSG00000117921.1 ENSMUSG00000117921 ENSMUST00000236398 Gm50186 lincRNA Interval_61375 chr15 81190137 81191289 + 0 NA promoter-TSS (ENSMUSG00000042292.18) protein_coding-promoter-TSS (ENSMUSG00000042292.18) -140 ENSMUSG00000047938.7 ENSMUSG00000047938 ENSMUST00000138715 4930483J18Rik processed_transcript Interval_73087 chr17 34712793 34713638 + 0 NA intron (ENSMUSG00000033327.18, intron 29 of 43) protein_coding-intron (ENSMUSG00000033327.18, intron 26 of 40) 9037 ENSMUSG00000092471.1 ENSMUSG00000092471 ENSMUST00000172970 Cyp21a2-ps unprocessed_pseudogene Interval_6517 chr1 113970364 113971117 + 0 NA Intergenic Intergenic -6606 ENSMUSG00000097648.1 ENSMUSG00000097648 ENSMUST00000180837 9330185C12Rik lincRNA Interval_5305 chr1 87390180 87390562 + 0 NA promoter-TSS (ENSMUSG00000079436.3) protein_coding-promoter-TSS (ENSMUSG00000079436.3) -982 ENSMUSG00000079436.3 ENSMUSG00000079436 ENSMUST00000174179 Kcnj13 protein_coding Interval_36270 chr12 40499243 40499517 + 0 NA intron (ENSMUSG00000035954.10, intron 1 of 5) protein_coding-intron (ENSMUSG00000035954.10, intron 1 of 52) 53297 ENSMUSG00000035954.10 ENSMUSG00000035954 ENSMUST00000220850 Dock4 protein_coding Interval_171154 chr9 114797407 114798207 + 0 NA intron (ENSMUSG00000041012.4, intron 1 of 1) protein_coding-intron (ENSMUSG00000041012.4, intron 1 of 3) 17707 ENSMUSG00000052724.7 ENSMUSG00000052724 ENSMUST00000150678 Gm9888 antisense Interval_150552 chr7 112359473 112360046 + 0 NA intron (ENSMUSG00000038244.14, intron 3 of 13) protein_coding-intron (ENSMUSG00000038244.14, intron 3 of 13) 10365 ENSMUSG00000038244.14 ENSMUSG00000038244 ENSMUST00000140202 Mical2 protein_coding Interval_153513 chr7 145324156 145324700 + 0 NA TTS (ENSMUSG00000051207.7) protein_coding-TTS (ENSMUSG00000051207.7) 9593 ENSMUSG00000051207.7 ENSMUSG00000051207 ENSMUST00000062163 Mrgprd protein_coding Interval_117774 chr4 126162333 126163994 + 0 NA promoter-TSS (ENSMUSG00000073758.10) protein_coding-promoter-TSS (ENSMUSG00000073758.10) -562 ENSMUSG00000073758.10 ENSMUSG00000073758 ENSMUST00000141638 Sh3d21 protein_coding Interval_152485 chr7 133389718 133390587 + 0 NA Intergenic Intergenic -56951 ENSMUSG00000109619.1 ENSMUSG00000109619 ENSMUST00000209700 Gm45672 lincRNA Interval_40835 chr12 108757617 108758534 + 0 NA Intergenic Intergenic 4895 ENSMUSG00000112971.1 ENSMUSG00000112971 ENSMUST00000222233 Gm33682 lincRNA Interval_59075 chr15 43198292 43198522 + 0 NA Intergenic Intergenic 19754 ENSMUSG00000098002.1 ENSMUSG00000098002 ENSMUST00000182757 Gm9658 processed_pseudogene Interval_95465 chr2 109848569 109849237 + 0 NA Intergenic Intergenic -41967 ENSMUSG00000027162.7 ENSMUSG00000027162 ENSMUST00000151163 Lin7c protein_coding Interval_153216 chr7 142518268 142518460 + 0 NA Intergenic Intergenic -14797 ENSMUSG00000037772.13 ENSMUSG00000037772 ENSMUST00000141098 Mrpl23 protein_coding Interval_74860 chr17 56928973 56929538 + 0 NA intron (ENSMUSG00000024212.9, intron 1 of 11) protein_coding-intron (ENSMUSG00000024212.9, intron 1 of 11) -23509 ENSMUSG00000024212.9 ENSMUSG00000024212 ENSMUST00000233063 Mllt1 protein_coding Interval_129830 chr5 122627210 122627698 + 0 NA Intergenic Intergenic -20085 ENSMUSG00000029469.14 ENSMUSG00000029469 ENSMUST00000136024 Ift81 protein_coding Interval_55489 chr14 88695998 88696254 + 0 NA intron (ENSMUSG00000115623.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000115623.1, intron 1 of 2) 60093 ENSMUSG00000115623.1 ENSMUSG00000115623 ENSMUST00000227074 Gm41225 lincRNA Interval_78472 chr18 13280776 13281084 + 0 NA Intergenic Intergenic 25408 ENSMUSG00000117536.1 ENSMUSG00000117536 ENSMUST00000234045 Gm41669 lincRNA Interval_120041 chr4 141494150 141494658 + 0 NA intron (ENSMUSG00000040761.16, intron 3 of 15) protein_coding-intron (ENSMUSG00000040761.16, intron 3 of 14) -6092 ENSMUSG00000040761.16 ENSMUSG00000040761 ENSMUST00000152081 Spen protein_coding Interval_56347 chr14 117938930 117939199 + 0 NA intron (ENSMUSG00000058571.11, intron 7 of 9) protein_coding-intron (ENSMUSG00000058571.11, intron 6 of 8) 14783 ENSMUSG00000098648.1 ENSMUSG00000098648 ENSMUST00000183564 Mir6239 miRNA Interval_135422 chr6 39284595 39285453 + 0 NA Intergenic Intergenic -19082 ENSMUSG00000089422.1 ENSMUSG00000089422 ENSMUST00000158797 Gm26008 snRNA Interval_34932 chr12 13792713 13793486 + 0 NA promoter-TSS (ENSMUSG00000113855.1) processed_pseudogene-promoter-TSS (ENSMUSG00000113855.1) -762 ENSMUSG00000113855.1 ENSMUSG00000113855 ENSMUST00000220877 Gm49374 processed_pseudogene Interval_72121 chr17 28163540 28164255 + 0 NA intron (ENSMUSG00000038677.14, intron 10 of 21) protein_coding-intron (ENSMUSG00000038677.14, intron 10 of 21) -13561 ENSMUSG00000024220.14 ENSMUSG00000024220 ENSMUST00000151595 Zfp523 protein_coding Interval_94349 chr2 90439953 90440420 + 0 NA intron (ENSMUSG00000025314.16, intron 22 of 23) protein_coding-intron (ENSMUSG00000025314.16, intron 20 of 21) -39064 ENSMUSG00000085471.1 ENSMUSG00000085471 ENSMUST00000126953 4933423P22Rik antisense Interval_122897 chr5 27035482 27036341 + 0 NA intron (ENSMUSG00000061576.15, intron 1 of 25) protein_coding-intron (ENSMUSG00000061576.15, intron 1 of 25) -13482 ENSMUSG00000061576.15 ENSMUSG00000061576 ENSMUST00000134175 Dpp6 protein_coding Interval_76651 chr17 83138238 83140081 + 0 NA Intergenic Intergenic -18418 ENSMUSG00000117509.1 ENSMUSG00000117509 ENSMUST00000234289 Gm46606 lincRNA Interval_155136 chr8 26961136 26961951 + 0 NA Intergenic Intergenic -4891 ENSMUSG00000110345.1 ENSMUSG00000110345 ENSMUST00000211774 Gm45572 lincRNA Interval_112411 chr4 41097260 41098827 + 0 NA exon (ENSMUSG00000028435.8, exon 1 of 6) protein_coding-exon (ENSMUSG00000028435.8, exon 1 of 6) -3595 ENSMUSG00000028435.8 ENSMUSG00000028435 ENSMUST00000154722 Aqp3 protein_coding Interval_55641 chr14 97515005 97515248 + 0 NA Intergenic Intergenic 151165 ENSMUSG00000115598.1 ENSMUSG00000115598 ENSMUST00000227015 Gm9290 processed_pseudogene Interval_162278 chr8 126665826 126667523 + 0 NA Intergenic Intergenic -72688 ENSMUSG00000051495.7 ENSMUSG00000051495 ENSMUST00000054960 Irf2bp2 protein_coding Interval_94590 chr2 92474820 92476941 + 0 NA Intergenic Intergenic -8046 ENSMUSG00000085261.1 ENSMUSG00000085261 ENSMUST00000141341 Gm13814 lincRNA Interval_8166 chr1 136212800 136213277 + 0 NA promoter-TSS (ENSMUSG00000087230.10) protein_coding-promoter-TSS (ENSMUSG00000087230.10) -210 ENSMUSG00000087230.10 ENSMUSG00000087230 ENSMUST00000166708 Mroh3 protein_coding Interval_41985 chr13 5898850 5901172 + 0 NA intron (ENSMUSG00000113757.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000113757.1, intron 1 of 1) 12902 ENSMUSG00000113757.1 ENSMUSG00000113757 ENSMUST00000221487 Gm47507 lincRNA Interval_106154 chr3 93760295 93761856 + 0 NA Intergenic Intergenic -11925 ENSMUSG00000068879.4 ENSMUSG00000068879 ENSMUST00000090853 Gm5773 protein_coding Interval_147620 chr7 70239208 70239768 + 0 NA intron (ENSMUSG00000109097.1, intron 1 of 3) lincRNA-intron (ENSMUSG00000109097.1, intron 1 of 3) 10288 ENSMUSG00000099387.1 ENSMUSG00000099387 ENSMUST00000188229 Gm29327 lincRNA Interval_25657 chr11 50443838 50444478 + 0 NA Intergenic Intergenic -29583 ENSMUSG00000020375.9 ENSMUSG00000020375 ENSMUST00000129304 Rufy1 protein_coding Interval_116510 chr4 114907324 114910319 + 0 NA promoter-TSS (ENSMUSG00000055210.4) protein_coding-promoter-TSS (ENSMUSG00000055210.4) 52 ENSMUSG00000055210.4 ENSMUSG00000055210 ENSMUST00000068654 Foxd2 protein_coding Interval_31133 chr11 98345324 98345665 + 0 NA Intergenic Intergenic -9102 ENSMUSG00000061718.12 ENSMUSG00000061718 ENSMUST00000152525 Ppp1r1b protein_coding Interval_44777 chr13 48545477 48546934 + 0 NA intron (ENSMUSG00000097375.3, intron 1 of 1) lincRNA-intron (ENSMUSG00000097375.3, intron 1 of 1) 295 ENSMUSG00000097375.3 ENSMUSG00000097375 ENSMUST00000181490 6720427I07Rik lincRNA Interval_4761 chr1 78473658 78473859 + 0 NA intron (ENSMUSG00000026245.16, intron 4 of 5) protein_coding-intron (ENSMUSG00000026245.16, intron 5 of 16) -6832 ENSMUSG00000104018.1 ENSMUSG00000104018 ENSMUST00000195509 4833412K13Rik TEC Interval_30625 chr11 95544082 95545642 + 0 NA Intergenic Intergenic -30292 ENSMUSG00000046719.7 ENSMUSG00000046719 ENSMUST00000058866 Nxph3 protein_coding Interval_62813 chr15 97166982 97167622 + 0 NA promoter-TSS (ENSMUSG00000116295.1) lincRNA-promoter-TSS (ENSMUSG00000116295.1) -58 ENSMUSG00000116295.1 ENSMUSG00000116295 ENSMUST00000229491 Gm32885 lincRNA Interval_154076 chr8 12508558 12508767 + 0 NA Intergenic Intergenic 5763 ENSMUSG00000109582.1 ENSMUSG00000109582 ENSMUST00000211062 4933439N14Rik lincRNA Interval_116170 chr4 108357764 108359148 + 0 NA Intergenic Intergenic 24893 ENSMUSG00000059816.5 ENSMUSG00000059816 ENSMUST00000053157 Shisal2a protein_coding Interval_64809 chr16 16059873 16061980 + 0 NA intron (ENSMUSG00000041974.10, intron 5 of 16) protein_coding-intron (ENSMUSG00000041974.10, intron 5 of 19) -38672 ENSMUSG00000116385.1 ENSMUSG00000116385 ENSMUST00000230117 Gm18334 processed_pseudogene Interval_120210 chr4 144310334 144310658 + 0 NA Intergenic Intergenic -5555 ENSMUSG00000080943.1 ENSMUSG00000080943 ENSMUST00000119195 Gm13130 unprocessed_pseudogene Interval_42298 chr13 11905418 11906450 + 0 NA intron (ENSMUSG00000021313.16, intron 3 of 104) protein_coding-intron (ENSMUSG00000021313.16, intron 3 of 104) -33624 ENSMUSG00000098110.1 ENSMUSG00000098110 ENSMUST00000182176 Gm26956 processed_pseudogene Interval_155448 chr8 33646888 33647336 + 0 NA Intergenic Intergenic -5411 ENSMUSG00000031584.16 ENSMUSG00000031584 ENSMUST00000149528 Gsr protein_coding Interval_96975 chr2 130204591 130204819 + 0 NA intron (ENSMUSG00000060332.9, intron 2 of 18) protein_coding-intron (ENSMUSG00000060332.9, intron 3 of 19) 8162 ENSMUSG00000060332.9 ENSMUSG00000060332 ENSMUST00000166774 Tmc2 protein_coding Interval_15563 chr10 51530977 51531267 + 0 NA TTS (ENSMUSG00000112843.1) lincRNA-TTS (ENSMUSG00000112843.1) 4782 ENSMUSG00000112843.1 ENSMUSG00000112843 ENSMUST00000220221 Gm46224 lincRNA Interval_153268 chr7 143068377 143070022 + 0 NA promoter-TSS (ENSMUSG00000045752.13) protein_coding-promoter-TSS (ENSMUSG00000045752.13) -568 ENSMUSG00000045752.13 ENSMUSG00000045752 ENSMUST00000208779 Tssc4 protein_coding Interval_44704 chr13 47289953 47290255 + 0 NA Intergenic Intergenic 50835 ENSMUSG00000114958.1 ENSMUSG00000114958 ENSMUST00000224746 Gm48612 lincRNA Interval_28933 chr11 79358108 79358474 + 0 NA intron (ENSMUSG00000020716.16, intron 1 of 30) protein_coding-intron (ENSMUSG00000020716.16, intron 1 of 57) 13939 ENSMUSG00000082304.1 ENSMUSG00000082304 ENSMUST00000119771 Gm11198 processed_pseudogene Interval_95054 chr2 103547171 103547747 + 0 NA exon (ENSMUSG00000081687.1, exon 1 of 1) processed_pseudogene-exon (ENSMUSG00000081687.1, exon 1 of 1) 200 ENSMUSG00000081687.1 ENSMUSG00000081687 ENSMUST00000118456 Gm13996 processed_pseudogene Interval_150469 chr7 110930371 110930889 + 0 NA intron (ENSMUSG00000005611.15, intron 2 of 4) protein_coding-intron (ENSMUSG00000005611.15, intron 2 of 20) 25645 ENSMUSG00000087160.1 ENSMUSG00000087160 ENSMUST00000126011 Gm16336 antisense Interval_142922 chr6 146978743 146979583 + 0 NA intron (ENSMUSG00000016487.15, intron 2 of 3) protein_coding-intron (ENSMUSG00000016487.15, intron 4 of 26) 2680 ENSMUSG00000016487.15 ENSMUSG00000016487 ENSMUST00000136837 Ppfibp1 protein_coding Interval_91475 chr2 39134034 39134227 + 0 NA intron (ENSMUSG00000035236.17, intron 2 of 17) protein_coding-intron (ENSMUSG00000035236.17, intron 2 of 17) -19834 ENSMUSG00000107833.1 ENSMUSG00000107833 ENSMUST00000204611 Gm18791 processed_pseudogene Interval_49057 chr13 107568676 107569241 + 0 NA Intergenic Intergenic -3635 ENSMUSG00000114534.1 ENSMUSG00000114534 ENSMUST00000224949 Gm32004 processed_transcript Interval_22035 chr11 5906124 5907451 + 0 NA intron (ENSMUSG00000041798.15, intron 4 of 9) protein_coding-intron (ENSMUSG00000041798.15, intron 4 of 9) -4700 ENSMUSG00000041798.15 ENSMUSG00000041798 ENSMUST00000125434 Gck protein_coding Interval_52675 chr14 48503803 48505364 + 0 NA intron (ENSMUSG00000036339.18, intron 12 of 15) protein_coding-intron (ENSMUSG00000036339.18, intron 12 of 15) -19050 ENSMUSG00000115756.1 ENSMUSG00000115756 ENSMUST00000226673 Gm49519 processed_transcript Interval_37426 chr12 68425058 68425399 + 0 NA intron (ENSMUSG00000113867.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000113867.1, intron 1 of 2) 15054 ENSMUSG00000113161.1 ENSMUSG00000113161 ENSMUST00000220950 Gm47457 TEC Interval_117824 chr4 126441788 126441995 + 0 NA TTS (ENSMUSG00000041530.17) protein_coding-TTS (ENSMUSG00000041530.17) 26530 ENSMUSG00000041530.17 ENSMUSG00000041530 ENSMUST00000149425 Ago1 protein_coding Interval_119286 chr4 136657225 136657881 + 0 NA exon (ENSMUSG00000028664.14, exon 14 of 16) protein_coding-exon (ENSMUSG00000028664.14, exon 14 of 16) 17971 ENSMUSG00000103119.1 ENSMUSG00000103119 ENSMUST00000195460 Gm37583 TEC Interval_155050 chr8 25962278 25963347 + 0 NA intron (ENSMUSG00000037260.8, intron 7 of 17) protein_coding-intron (ENSMUSG00000037260.8, intron 7 of 17) 11241 ENSMUSG00000037260.8 ENSMUSG00000037260 ENSMUST00000209420 Hgsnat protein_coding Interval_161693 chr8 122088683 122088897 + 0 NA intron (ENSMUSG00000092329.1, intron 1 of 15) protein_coding-intron (ENSMUSG00000092329.1, intron 1 of 15) 110766 ENSMUSG00000099140.1 ENSMUSG00000099140 ENSMUST00000184699 Mir7237 miRNA Interval_55658 chr14 98414071 98414655 + 0 NA Intergenic Intergenic 105337 ENSMUSG00000115486.1 ENSMUSG00000115486 ENSMUST00000226609 Gm49017 processed_pseudogene Interval_118362 chr4 130895182 130897107 + 0 NA Intergenic Intergenic -17214 ENSMUSG00000028581.17 ENSMUSG00000028581 ENSMUST00000125332 Laptm5 protein_coding Interval_16822 chr10 68541256 68542766 + 0 NA promoter-TSS (ENSMUSG00000019945.10) protein_coding-promoter-TSS (ENSMUSG00000019945.10) 11917 ENSMUSG00000112793.1 ENSMUSG00000112793 ENSMUST00000220037 Gm32872 antisense Interval_106229 chr3 94795603 94795943 + 0 NA Intergenic Intergenic -9258 ENSMUSG00000068876.16 ENSMUSG00000068876 ENSMUST00000155485 Cgn protein_coding Interval_171327 chr9 116383331 116384814 + 0 NA Intergenic Intergenic 52904 ENSMUSG00000110752.1 ENSMUSG00000110752 ENSMUST00000217456 D730003K21Rik lincRNA Interval_104704 chr3 69554077 69554313 + 0 NA exon (ENSMUSG00000027784.10, exon 4 of 4) protein_coding-exon (ENSMUSG00000027784.10, exon 4 of 4) 13269 ENSMUSG00000098006.1 ENSMUSG00000098006 ENSMUST00000183259 Gm8565 processed_pseudogene Interval_139142 chr6 95951944 95952344 + 0 NA Intergenic Intergenic -25215 ENSMUSG00000107856.1 ENSMUSG00000107856 ENSMUST00000203221 Gm7838 processed_pseudogene Interval_85041 chr19 21747189 21747846 + 0 NA Intergenic Intergenic 18247 ENSMUSG00000118055.1 ENSMUSG00000118055 ENSMUST00000235761 Gm50129 processed_pseudogene Interval_136731 chr6 58700244 58701597 + 0 NA Intergenic Intergenic 60338 ENSMUSG00000029802.13 ENSMUSG00000029802 ENSMUST00000134426 Abcg2 protein_coding Interval_147354 chr7 66066446 66066806 + 0 NA intron (ENSMUSG00000030512.13, intron 3 of 7) protein_coding-intron (ENSMUSG00000030512.13, intron 3 of 7) 6023 ENSMUSG00000030512.13 ENSMUSG00000030512 ENSMUST00000147702 Snrpa1 protein_coding Interval_25918 chr11 52567919 52568578 + 0 NA Intergenic Intergenic -80938 ENSMUSG00000083129.1 ENSMUSG00000083129 ENSMUST00000118245 Gm12210 processed_pseudogene Interval_60361 chr15 73165442 73165706 + 0 NA intron (ENSMUSG00000036698.11, intron 1 of 18) protein_coding-intron (ENSMUSG00000036698.11, intron 1 of 18) 12273 ENSMUSG00000036698.11 ENSMUSG00000036698 ENSMUST00000230464 Ago2 protein_coding Interval_49943 chr13 118597942 118598364 + 0 NA exon (ENSMUSG00000114831.1, exon 1 of 1) processed_pseudogene-exon (ENSMUSG00000114831.1, exon 1 of 1) 765 ENSMUSG00000114831.1 ENSMUSG00000114831 ENSMUST00000224199 Gm18361 processed_pseudogene Interval_152848 chr7 138806371 138807912 + 0 NA Intergenic Intergenic -13604 ENSMUSG00000110241.1 ENSMUSG00000110241 ENSMUST00000211620 Gm45506 processed_pseudogene Interval_16319 chr10 62182956 62183772 + 0 NA Intergenic Intergenic 10863 ENSMUSG00000099185.1 ENSMUSG00000099185 ENSMUST00000184761 Mir7662 miRNA Interval_89498 chr2 21140948 21142683 + 0 NA intron (ENSMUSG00000086821.3, intron 1 of 8) unprocessed_pseudogene-intron (ENSMUSG00000086821.3, intron 1 of 8) 139 ENSMUSG00000086821.3 ENSMUSG00000086821 ENSMUST00000137984 Gm13377 unprocessed_pseudogene Interval_9563 chr1 159429828 159430469 + 0 NA TTS (ENSMUSG00000103389.1) processed_pseudogene-TTS (ENSMUSG00000103389.1) 1188 ENSMUSG00000103389.1 ENSMUSG00000103389 ENSMUST00000193072 Gm37757 processed_pseudogene Interval_150803 chr7 114771915 114772149 + 0 NA exon (ENSMUSG00000048782.15, exon 2 of 3) protein_coding-exon (ENSMUSG00000048782.15, exon 2 of 3) -21936 ENSMUSG00000048782.15 ENSMUSG00000048782 ENSMUST00000206274 Insc protein_coding Interval_85670 chr19 29515255 29516503 + 0 NA intron (ENSMUSG00000097855.8, intron 1 of 5) antisense-intron (ENSMUSG00000097855.8, intron 2 of 3) 5091 ENSMUSG00000097855.8 ENSMUSG00000097855 ENSMUST00000180737 A930007I19Rik antisense Interval_26668 chr11 59565722 59566330 + 0 NA intron (ENSMUSG00000032691.14, intron 9 of 9) protein_coding-intron (ENSMUSG00000032691.14, intron 10 of 10) 10143 ENSMUSG00000059610.5 ENSMUSG00000059610 ENSMUST00000071943 Olfr222 protein_coding Interval_87379 chr19 48090314 48090724 + 0 NA Intergenic Intergenic -26829 ENSMUSG00000117690.1 ENSMUSG00000117690 ENSMUST00000237618 Gm50430 lincRNA Interval_58832 chr15 38406032 38407222 + 0 NA Intergenic Intergenic -2473 ENSMUSG00000115405.1 ENSMUSG00000115405 ENSMUST00000227422 Gm41307 lincRNA Interval_37948 chr12 73258417 73258634 + 0 NA intron (ENSMUSG00000021103.12, intron 6 of 6) protein_coding-intron (ENSMUSG00000021103.12, intron 7 of 7) 28185 ENSMUSG00000034442.11 ENSMUSG00000034442 ENSMUST00000221189 Trmt5 protein_coding Interval_49210 chr13 109484612 109485563 + 0 NA intron (ENSMUSG00000021699.17, intron 1 of 14) protein_coding-intron (ENSMUSG00000021699.17, intron 1 of 14) 160343 ENSMUSG00000076946.2 ENSMUSG00000076946 ENSMUST00000103758 Mir582 miRNA Interval_38978 chr12 84239617 84240121 + 0 NA Intergenic Intergenic 19104 ENSMUSG00000042962.5 ENSMUSG00000042962 ENSMUST00000058103 Gm5436 processed_pseudogene Interval_145122 chr7 30177784 30178825 + 0 NA exon (ENSMUSG00000066647.8, exon 3 of 3) transcribed_unprocessed_pseudogene-exon (ENSMUSG00000066647.8, exon 3 of 3) 4874 ENSMUSG00000066647.8 ENSMUSG00000066647 ENSMUST00000238596 Gm5113 transcribed_unprocessed_pseudogene Interval_29033 chr11 80003812 80004560 + 0 NA intron (ENSMUSG00000017548.15, intron 3 of 5) protein_coding-intron (ENSMUSG00000017548.15, intron 4 of 15) 11080 ENSMUSG00000017548.15 ENSMUSG00000017548 ENSMUST00000144188 Suz12 protein_coding Interval_16039 chr10 60250433 60251108 + 0 NA Intergenic Intergenic -26858 ENSMUSG00000004207.14 ENSMUSG00000004207 ENSMUST00000165878 Psap protein_coding Interval_123444 chr5 32610419 32611857 + 0 NA promoter-TSS (ENSMUSG00000014932.15) protein_coding-promoter-TSS (ENSMUSG00000014932.15) -33 ENSMUSG00000014932.15 ENSMUSG00000014932 ENSMUST00000200999 Yes1 protein_coding Interval_90517 chr2 30905756 30907012 + 0 NA intron (ENSMUSG00000050737.13, intron 1 of 2) protein_coding-intron (ENSMUSG00000050737.13, intron 1 of 2) 17973 ENSMUSG00000084143.1 ENSMUSG00000084143 ENSMUST00000117436 Gm13400 processed_pseudogene Interval_126596 chr5 90601633 90601871 + 0 NA Intergenic Intergenic 8049 ENSMUSG00000029370.10 ENSMUSG00000029370 ENSMUST00000201436 Rassf6 protein_coding Interval_54164 chr14 65845177 65845459 + 0 NA intron (ENSMUSG00000022035.6, intron 2 of 7) protein_coding-intron (ENSMUSG00000022035.6, intron 2 of 8) 7958 ENSMUSG00000022035.6 ENSMUSG00000022035 ENSMUST00000226027 Ccdc25 protein_coding Interval_138331 chr6 87303663 87304166 + 0 NA intron (ENSMUSG00000033420.12, intron 3 of 16) protein_coding-intron (ENSMUSG00000033420.12, intron 3 of 17) 18425 ENSMUSG00000107780.1 ENSMUSG00000107780 ENSMUST00000203393 9530013L04Rik TEC Interval_51650 chr14 31087387 31087878 + 0 NA TTS (ENSMUSG00000058351.11) protein_coding-TTS (ENSMUSG00000058351.11) -10197 ENSMUSG00000090305.2 ENSMUSG00000090305 ENSMUST00000171235 Gm5459 processed_pseudogene Interval_14359 chr10 31467483 31468258 + 0 NA Intergenic Intergenic -15788 ENSMUSG00000111865.1 ENSMUSG00000111865 ENSMUST00000217582 Gm47687 TEC Interval_69984 chr17 3866073 3867004 + 0 NA Intergenic Intergenic -170277 ENSMUSG00000023802.4 ENSMUSG00000023802 ENSMUST00000115800 Nox3 protein_coding Interval_11567 chr1 182777779 182778819 + 0 NA intron (ENSMUSG00000038576.15, intron 2 of 2) protein_coding-intron (ENSMUSG00000038576.15, intron 1 of 7) 13743 ENSMUSG00000038576.15 ENSMUSG00000038576 ENSMUST00000085724 Susd4 protein_coding Interval_28926 chr11 79306109 79307677 + 0 NA Intergenic Intergenic -9987 ENSMUSG00000055072.2 ENSMUSG00000055072 ENSMUST00000068448 Gm9964 TEC Interval_119114 chr4 135626594 135627318 + 0 NA promoter-TSS (ENSMUSG00000086788.2) lincRNA-promoter-TSS (ENSMUSG00000086788.2) 138 ENSMUSG00000086788.2 ENSMUSG00000086788 ENSMUST00000148529 1700029M20Rik lincRNA Interval_134968 chr6 34191165 34192716 + 0 NA Intergenic Intergenic 12708 ENSMUSG00000087613.1 ENSMUSG00000087613 ENSMUST00000145644 Gm13855 lincRNA Interval_91871 chr2 50877491 50878264 + 0 NA Intergenic Intergenic -31807 ENSMUSG00000083270.1 ENSMUSG00000083270 ENSMUST00000119159 Gm13498 processed_pseudogene Interval_93084 chr2 70002259 70002668 + 0 NA intron (ENSMUSG00000044308.17, intron 4 of 5) protein_coding-intron (ENSMUSG00000044308.17, intron 30 of 38) 13677 ENSMUSG00000044308.17 ENSMUSG00000044308 ENSMUST00000123890 Ubr3 protein_coding Interval_31553 chr11 101326674 101327561 + 0 NA intron (ENSMUSG00000078651.8, intron 1 of 3) protein_coding-intron (ENSMUSG00000078651.8, intron 1 of 3) 2030 ENSMUSG00000078651.8 ENSMUSG00000078651 ENSMUST00000107264 Aoc2 protein_coding Interval_122234 chr5 20521980 20522328 + 0 NA intron (ENSMUSG00000040003.18, intron 6 of 15) protein_coding-intron (ENSMUSG00000040003.18, intron 10 of 22) -66442 ENSMUSG00000106240.1 ENSMUSG00000106240 ENSMUST00000196129 Gm3544 processed_pseudogene Interval_165881 chr9 54182686 54182988 + 0 NA promoter-TSS (ENSMUSG00000032274.9) protein_coding-promoter-TSS (ENSMUSG00000032274.9) -763 ENSMUSG00000032274.9 ENSMUSG00000032274 ENSMUST00000216974 Cyp19a1 protein_coding Interval_112067 chr4 34049649 34050445 + 0 NA promoter-TSS (ENSMUSG00000028264.16) protein_coding-promoter-TSS (ENSMUSG00000028264.16) -9007 ENSMUSG00000028264.16 ENSMUSG00000028264 ENSMUST00000029927 Spaca1 protein_coding Interval_16494 chr10 63184261 63184842 + 0 NA intron (ENSMUSG00000020067.8, intron 2 of 19) protein_coding-intron (ENSMUSG00000020067.8, intron 2 of 19) 59602 ENSMUSG00000045391.4 ENSMUSG00000045391 ENSMUST00000054837 1700120B22Rik bidirectional_promoter_lncRNA Interval_23161 chr11 20236904 20237696 + 0 NA intron (ENSMUSG00000044066.14, intron 4 of 6) protein_coding-intron (ENSMUSG00000044066.14, intron 4 of 6) 12129 ENSMUSG00000044066.14 ENSMUSG00000044066 ENSMUST00000161218 Cep68 protein_coding Interval_83609 chr18 90545118 90546228 + 0 NA Intergenic Intergenic 14737 ENSMUSG00000117747.1 ENSMUSG00000117747 ENSMUST00000236589 Gm50438 transcribed_processed_pseudogene Interval_168340 chr9 78920740 78920948 + 0 NA Intergenic Intergenic 15939 ENSMUSG00000111081.1 ENSMUSG00000111081 ENSMUST00000216958 Gm47498 processed_pseudogene Interval_137628 chr6 76495763 76498733 + 0 NA exon (ENSMUSG00000072476.6, exon 1 of 1) protein_coding-exon (ENSMUSG00000072476.6, exon 1 of 1) 536 ENSMUSG00000072476.6 ENSMUSG00000072476 ENSMUST00000097218 Gm9008 protein_coding Interval_33235 chr11 115403267 115404368 + 0 NA promoter-TSS (ENSMUSG00000018858.15) protein_coding-promoter-TSS (ENSMUSG00000018858.15) 4497 ENSMUSG00000085072.1 ENSMUSG00000085072 ENSMUST00000125653 Ict1os antisense Interval_159940 chr8 105295665 105296503 + 0 NA promoter-TSS (ENSMUSG00000043251.6) protein_coding-promoter-TSS (ENSMUSG00000043251.6) 17 ENSMUSG00000043251.6 ENSMUSG00000043251 ENSMUST00000212261 Exoc3l protein_coding Interval_16598 chr10 64750493 64751136 + 0 NA intron (ENSMUSG00000060843.11, intron 13 of 17) protein_coding-intron (ENSMUSG00000060843.11, intron 12 of 16) 369553 ENSMUSG00000100528.1 ENSMUSG00000100528 ENSMUST00000187710 Gm28881 lincRNA Interval_6615 chr1 118326761 118327033 + 0 NA intron (ENSMUSG00000026377.12, intron 2 of 3) protein_coding-intron (ENSMUSG00000026377.12, intron 2 of 6) 4745 ENSMUSG00000026377.12 ENSMUSG00000026377 ENSMUST00000161495 Nifk protein_coding Interval_54226 chr14 66545333 66545548 + 0 NA Intergenic Intergenic 46255 ENSMUSG00000088737.1 ENSMUSG00000088737 ENSMUST00000158112 Gm23899 rRNA Interval_166869 chr9 63507910 63508171 + 0 NA intron (ENSMUSG00000037801.13, intron 12 of 20) protein_coding-intron (ENSMUSG00000037801.13, intron 13 of 21) -63965 ENSMUSG00000091866.1 ENSMUSG00000091866 ENSMUST00000163864 Gm6257 processed_pseudogene Interval_94556 chr2 92199696 92199947 + 0 NA intron (ENSMUSG00000058318.15, intron 2 of 3) protein_coding-intron (ENSMUSG00000058318.15, intron 1 of 15) 7844 ENSMUSG00000088639.1 ENSMUSG00000088639 ENSMUST00000158014 Mir1955 miRNA Interval_51459 chr14 27702219 27702868 + 0 NA intron (ENSMUSG00000040640.11, intron 1 of 15) protein_coding-intron (ENSMUSG00000040640.11, intron 2 of 15) -11834 ENSMUSG00000114653.1 ENSMUSG00000114653 ENSMUST00000224481 Gm18398 processed_pseudogene Interval_89271 chr2 18693981 18694853 + 0 NA exon (ENSMUSG00000037708.16, exon 1 of 3) protein_coding-exon (ENSMUSG00000037708.16, exon 1 of 3) -4667 ENSMUSG00000037708.16 ENSMUSG00000037708 ENSMUST00000173763 Spag6 protein_coding Interval_42184 chr13 9661010 9661203 + 0 NA intron (ENSMUSG00000048264.16, intron 14 of 15) protein_coding-intron (ENSMUSG00000048264.16, intron 37 of 38) -23187 ENSMUSG00000114138.1 ENSMUSG00000114138 ENSMUST00000222421 Gm36423 antisense Interval_14211 chr10 28903087 28903405 + 0 NA intron (ENSMUSG00000090126.1, intron 1 of 1) transcribed_processed_pseudogene-intron (ENSMUSG00000090126.1, intron 1 of 1) -17251 ENSMUSG00000111991.1 ENSMUSG00000111991 ENSMUST00000219942 Gm47835 unprocessed_pseudogene Interval_54580 chr14 70792205 70792429 + 0 NA Intergenic Intergenic 16438 ENSMUSG00000022102.13 ENSMUSG00000022102 ENSMUST00000164691 Dok2 protein_coding Interval_50659 chr14 17668630 17668859 + 0 NA intron (ENSMUSG00000021779.17, intron 1 of 1) protein_coding-intron (ENSMUSG00000021779.17, intron 1 of 9) 102378 ENSMUSG00000114281.1 ENSMUSG00000114281 ENSMUST00000225878 Gm48320 processed_pseudogene Interval_61626 chr15 83022840 83023679 + 0 NA promoter-TSS (ENSMUSG00000058099.16) protein_coding-promoter-TSS (ENSMUSG00000058099.16) -176 ENSMUSG00000058099.16 ENSMUSG00000058099 ENSMUST00000231204 Nfam1 protein_coding Interval_81500 chr18 61209788 61211983 + 0 NA exon (ENSMUSG00000034320.14, exon 1 of 1) protein_coding-exon (ENSMUSG00000034320.14, exon 1 of 1) 472 ENSMUSG00000034320.14 ENSMUSG00000034320 ENSMUST00000181997 Slc26a2 protein_coding Interval_130510 chr5 128487462 128487759 + 0 NA Intergenic Intergenic 30024 ENSMUSG00000104980.1 ENSMUSG00000104980 ENSMUST00000199120 4930573I07Rik lincRNA Interval_143968 chr7 18681572 18682760 + 0 NA intron (ENSMUSG00000063305.10, intron 3 of 4) protein_coding-intron (ENSMUSG00000063305.10, intron 4 of 5) 4019 ENSMUSG00000063305.10 ENSMUSG00000063305 ENSMUST00000076677 Psg20 protein_coding Interval_149558 chr7 99559183 99559855 + 0 NA intron (ENSMUSG00000018909.15, intron 1 of 4) protein_coding-intron (ENSMUSG00000018909.15, intron 1 of 14) 7250 ENSMUSG00000065571.1 ENSMUSG00000065571 ENSMUST00000083637 Mir326 miRNA Interval_154717 chr8 22813261 22814666 + 0 NA Intergenic Intergenic 8197 ENSMUSG00000054822.5 ENSMUSG00000054822 ENSMUST00000068068 1700041G16Rik lincRNA Interval_109464 chr3 142700319 142701847 + 0 NA promoter-TSS (ENSMUSG00000040213.13) protein_coding-promoter-TSS (ENSMUSG00000040213.13) -3 ENSMUSG00000040213.13 ENSMUSG00000040213 ENSMUST00000128096 Kyat3 protein_coding Interval_23238 chr11 20784530 20786396 + 0 NA Intergenic Intergenic -44008 ENSMUSG00000049659.15 ENSMUSG00000049659 ENSMUST00000134897 Aftph protein_coding Interval_119228 chr4 136325258 136325469 + 0 NA intron (ENSMUSG00000066037.14, intron 5 of 10) protein_coding-intron (ENSMUSG00000066037.14, intron 4 of 9) -13656 ENSMUSG00000066037.14 ENSMUSG00000066037 ENSMUST00000180855 Hnrnpr protein_coding Interval_122816 chr5 25734056 25735173 + 0 NA Intergenic Intergenic 24388 ENSMUSG00000104549.1 ENSMUSG00000104549 ENSMUST00000198670 Gm43142 processed_pseudogene Interval_85179 chr19 23435603 23436152 + 0 NA intron (ENSMUSG00000033207.7, intron 2 of 12) protein_coding-intron (ENSMUSG00000033207.7, intron 2 of 13) 1850 ENSMUSG00000117850.1 ENSMUSG00000117850 ENSMUST00000235152 Gm50443 processed_pseudogene Interval_121923 chr5 9699661 9700334 + 0 NA intron (ENSMUSG00000003974.6, intron 1 of 5) protein_coding-intron (ENSMUSG00000003974.6, intron 1 of 5) 25173 ENSMUSG00000003974.6 ENSMUSG00000003974 ENSMUST00000004076 Grm3 protein_coding Interval_108630 chr3 129657899 129658293 + 0 NA Intergenic Intergenic 26145 ENSMUSG00000092701.1 ENSMUSG00000092701 ENSMUST00000174960 Gm24515 miRNA Interval_21026 chr10 123678393 123678798 + 0 NA intron (ENSMUSG00000044071.9, intron 3 of 5) protein_coding-intron (ENSMUSG00000044071.9, intron 3 of 5) 95007 ENSMUSG00000111945.1 ENSMUSG00000111945 ENSMUST00000220109 Gm19169 processed_pseudogene Interval_143646 chr7 13706220 13706958 + 0 NA Intergenic Intergenic 13317 ENSMUSG00000100468.1 ENSMUSG00000100468 ENSMUST00000191236 Tmem167-ps1 processed_pseudogene Interval_93008 chr2 69544082 69544429 + 0 NA intron (ENSMUSG00000027070.14, intron 4 of 24) protein_coding-intron (ENSMUSG00000027070.14, intron 4 of 78) -35110 ENSMUSG00000027070.14 ENSMUSG00000027070 ENSMUST00000092551 Lrp2 protein_coding Interval_154775 chr8 23265496 23265770 + 0 NA Intergenic Intergenic -8567 ENSMUSG00000015341.17 ENSMUSG00000015341 ENSMUST00000211602 Golga7 protein_coding Interval_52745 chr14 49287206 49287613 + 0 NA Intergenic Intergenic 11864 ENSMUSG00000021852.14 ENSMUSG00000021852 ENSMUST00000146164 Slc35f4 protein_coding Interval_155383 chr8 33056165 33056497 + 0 NA promoter-TSS (ENSMUSG00000110214.1) lincRNA-promoter-TSS (ENSMUSG00000110214.1) -240 ENSMUSG00000110214.1 ENSMUSG00000110214 ENSMUST00000211548 Gm45587 lincRNA Interval_74997 chr17 59382462 59383027 + 0 NA Intergenic Intergenic -156901 ENSMUSG00000077629.1 ENSMUSG00000077629 ENSMUST00000104441 Gm23769 snoRNA Interval_31989 chr11 104328736 104330369 + 0 NA exon (ENSMUSG00000018411.17, exon 10 of 10) protein_coding-exon (ENSMUSG00000018411.17, exon 10 of 10) -70191 ENSMUSG00000085134.1 ENSMUSG00000085134 ENSMUST00000137561 Gm11659 antisense Interval_123839 chr5 35870328 35871073 + 0 NA intron (ENSMUSG00000029095.17, intron 2 of 3) protein_coding-intron (ENSMUSG00000029095.17, intron 16 of 19) 12806 ENSMUSG00000029095.17 ENSMUSG00000029095 ENSMUST00000153529 Ablim2 protein_coding Interval_70073 chr17 5142017 5142290 + 0 NA intron (ENSMUSG00000069729.14, intron 4 of 19) protein_coding-intron (ENSMUSG00000069729.14, intron 4 of 18) -30043 ENSMUSG00000081783.2 ENSMUSG00000081783 ENSMUST00000122283 Gm15599 processed_pseudogene Interval_44525 chr13 45724619 45725583 + 0 NA intron (ENSMUSG00000046876.16, intron 5 of 7) protein_coding-intron (ENSMUSG00000046876.16, intron 5 of 7) -24471 ENSMUSG00000114131.1 ENSMUSG00000114131 ENSMUST00000221126 Gm47460 antisense Interval_130331 chr5 125840043 125840238 + 0 NA Intergenic Intergenic 8600 ENSMUSG00000091970.3 ENSMUSG00000091970 ENSMUST00000164138 Gm4868 processed_pseudogene Interval_166737 chr9 62342959 62345214 + 0 NA promoter-TSS (ENSMUSG00000032249.14) protein_coding-promoter-TSS (ENSMUSG00000032249.14) 1622 ENSMUSG00000032249.14 ENSMUSG00000032249 ENSMUST00000145679 Anp32a protein_coding Interval_12065 chr1 189342588 189344489 + 0 NA promoter-TSS (ENSMUSG00000104507.1) antisense-promoter-TSS (ENSMUSG00000104507.1) -446 ENSMUSG00000104507.1 ENSMUSG00000104507 ENSMUST00000192797 A430027H14Rik antisense Interval_133453 chr6 5200244 5200446 + 0 NA Intergenic Intergenic -6561 ENSMUSG00000002588.13 ENSMUSG00000002588 ENSMUST00000176933 Pon1 protein_coding Interval_77645 chr17 93524516 93524950 + 0 NA Intergenic Intergenic -133035 ENSMUSG00000117368.1 ENSMUSG00000117368 ENSMUST00000234726 Gm50001 processed_pseudogene Interval_35802 chr12 30055142 30055531 + 0 NA intron (ENSMUSG00000020673.14, intron 16 of 16) protein_coding-intron (ENSMUSG00000020673.14, intron 16 of 16) -4321 ENSMUSG00000085472.1 ENSMUSG00000085472 ENSMUST00000138626 Gm15691 antisense Interval_143217 chr7 4536129 4537716 + 0 NA Intergenic Intergenic -4469 ENSMUSG00000055809.7 ENSMUSG00000055809 ENSMUST00000094897 Dnaaf3 protein_coding Interval_104851 chr3 75910367 75910683 + 0 NA intron (ENSMUSG00000034109.15, intron 3 of 15) protein_coding-intron (ENSMUSG00000034109.15, intron 2 of 14) -41599 ENSMUSG00000103024.1 ENSMUSG00000103024 ENSMUST00000193507 Gm37685 TEC Interval_163758 chr9 25367222 25368019 + 0 NA Intergenic Intergenic 18122 ENSMUSG00000111558.1 ENSMUSG00000111558 ENSMUST00000216734 Gm18891 processed_pseudogene Interval_118565 chr4 132532725 132533943 + 0 NA exon (ENSMUSG00000054428.12, exon 2 of 3) protein_coding-exon (ENSMUSG00000054428.12, exon 2 of 3) 154 ENSMUSG00000054428.12 ENSMUSG00000054428 ENSMUST00000145795 Atpif1 protein_coding Interval_64221 chr16 9273026 9274157 + 0 NA Intergenic Intergenic 114821 ENSMUSG00000116123.1 ENSMUSG00000116123 ENSMUST00000229655 Gm49451 lincRNA Interval_171341 chr9 116514612 116515041 + 0 NA Intergenic Intergenic 183658 ENSMUSG00000110752.1 ENSMUSG00000110752 ENSMUST00000217456 D730003K21Rik lincRNA Interval_46660 chr13 68301181 68301463 + 0 NA Intergenic Intergenic 55503 ENSMUSG00000113050.1 ENSMUSG00000113050 ENSMUST00000221830 Gm8016 lincRNA Interval_52536 chr14 47364757 47365696 + 0 NA Intergenic Intergenic -8690 ENSMUSG00000050335.17 ENSMUSG00000050335 ENSMUST00000146468 Lgals3 protein_coding Interval_119609 chr4 138706608 138707405 + 0 NA Intergenic Intergenic 18215 ENSMUSG00000043621.13 ENSMUSG00000043621 ENSMUST00000135156 Ubxn10 protein_coding Interval_143772 chr7 16214108 16215230 + 0 NA intron (ENSMUSG00000006019.15, intron 4 of 16) protein_coding-intron (ENSMUSG00000006019.15, intron 4 of 16) 7363 ENSMUSG00000006019.15 ENSMUSG00000006019 ENSMUST00000133518 Dhx34 protein_coding Interval_33056 chr11 113957182 113957442 + 0 NA intron (ENSMUSG00000041592.16, intron 1 of 11) protein_coding-intron (ENSMUSG00000041592.16, intron 1 of 44) -134094 ENSMUSG00000086760.1 ENSMUSG00000086760 ENSMUST00000129365 1700025D23Rik lincRNA Interval_11450 chr1 181983624 181984537 + 0 NA intron (ENSMUSG00000022995.16, intron 1 of 13) protein_coding-intron (ENSMUSG00000022995.16, intron 1 of 14) 6124 ENSMUSG00000102950.1 ENSMUSG00000102950 ENSMUST00000192441 Gm37018 TEC Interval_138640 chr6 90653717 90654312 + 0 NA Intergenic Intergenic 27506 ENSMUSG00000093052.2 ENSMUSG00000093052 ENSMUST00000175311 Gm24816 miRNA Interval_8514 chr1 140453334 140454171 + 0 NA intron (ENSMUSG00000052726.16, intron 2 of 6) protein_coding-intron (ENSMUSG00000052726.16, intron 13 of 26) 187265 ENSMUSG00000102698.1 ENSMUSG00000102698 ENSMUST00000195546 Gm37777 TEC Interval_133860 chr6 13639083 13640501 + 0 NA intron (ENSMUSG00000042742.7, intron 3 of 3) protein_coding-intron (ENSMUSG00000042742.7, intron 3 of 4) -31748 ENSMUSG00000029569.9 ENSMUSG00000029569 ENSMUST00000138637 Tmem168 protein_coding Interval_34710 chr12 8868272 8869613 + 0 NA Intergenic Intergenic 8440 ENSMUSG00000042976.6 ENSMUSG00000042976 ENSMUST00000218928 9930038B18Rik lincRNA Interval_86071 chr19 36236474 36237330 + 0 NA intron (ENSMUSG00000117990.1, intron 1 of 2) processed_transcript-intron (ENSMUSG00000117990.1, intron 1 of 2) -14825 ENSMUSG00000118032.1 ENSMUSG00000118032 ENSMUST00000236788 Gm50147 lincRNA Interval_135178 chr6 37286291 37286514 + 0 NA intron (ENSMUSG00000038665.15, intron 1 of 1) protein_coding-intron (ENSMUSG00000038665.15, intron 2 of 32) 13782 ENSMUSG00000038665.15 ENSMUSG00000038665 ENSMUST00000136457 Dgki protein_coding Interval_109484 chr3 142856064 142857020 + 0 NA promoter-TSS (ENSMUSG00000004591.16) protein_coding-promoter-TSS (ENSMUSG00000004591.16) -25046 ENSMUSG00000106550.1 ENSMUSG00000106550 ENSMUST00000199962 Gm43646 processed_transcript Interval_28423 chr11 75775485 75776396 + 0 NA intron (ENSMUSG00000020848.7, intron 6 of 8) protein_coding-intron (ENSMUSG00000020848.7, intron 6 of 8) -19280 ENSMUSG00000087059.7 ENSMUSG00000087059 ENSMUST00000139361 Gm12339 processed_transcript Interval_168853 chr9 88073325 88073809 + 0 NA Intergenic Intergenic -33875 ENSMUSG00000099584.1 ENSMUSG00000099584 ENSMUST00000191349 Gm28877 processed_pseudogene Interval_101869 chr3 10291645 10293636 + 0 NA intron (ENSMUSG00000027530.15, intron 1 of 5) protein_coding-intron (ENSMUSG00000027530.15, intron 1 of 5) -12151 ENSMUSG00000104092.2 ENSMUSG00000104092 ENSMUST00000194572 A930014E01Rik TEC Interval_63763 chr15 103290923 103291116 + 0 NA exon (ENSMUSG00000060992.9, exon 3 of 4) protein_coding-exon (ENSMUSG00000060992.9, exon 3 of 4) 5894 ENSMUSG00000065560.1 ENSMUSG00000065560 ENSMUST00000083626 Mir148b miRNA Interval_126599 chr5 90647540 90647892 + 0 NA Intergenic Intergenic -37915 ENSMUSG00000029370.10 ENSMUSG00000029370 ENSMUST00000201436 Rassf6 protein_coding Interval_92239 chr2 57264915 57265447 + 0 NA promoter-TSS (ENSMUSG00000026827.12) protein_coding-promoter-TSS (ENSMUSG00000026827.12) 10505 ENSMUSG00000084292.1 ENSMUSG00000084292 ENSMUST00000118714 Gm13535 processed_pseudogene Interval_121264 chr4 154509503 154510232 + 0 NA intron (ENSMUSG00000039410.16, intron 2 of 2) protein_coding-intron (ENSMUSG00000039410.16, intron 2 of 16) -40415 ENSMUSG00000086565.1 ENSMUSG00000086565 ENSMUST00000143888 Gm13133 antisense Interval_168697 chr9 86030557 86031627 + 0 NA Intergenic Intergenic -87892 ENSMUSG00000110946.1 ENSMUSG00000110946 ENSMUST00000213921 Gm47604 lincRNA Interval_58059 chr15 27527730 27527973 + 0 NA intron (ENSMUSG00000022265.7, intron 1 of 11) protein_coding-intron (ENSMUSG00000022265.7, intron 1 of 11) 23939 ENSMUSG00000115543.1 ENSMUSG00000115543 ENSMUST00000227224 B230362B09Rik TEC Interval_164003 chr9 30792954 30793806 + 0 NA Intergenic Intergenic -11901 ENSMUSG00000111867.1 ENSMUSG00000111867 ENSMUST00000213576 Gm31013 lincRNA Interval_48147 chr13 96670371 96671539 + 0 NA promoter-TSS (ENSMUSG00000021670.14) protein_coding-promoter-TSS (ENSMUSG00000021670.14) -4368 ENSMUSG00000021670.14 ENSMUSG00000021670 ENSMUST00000168374 Hmgcr protein_coding Interval_83969 chr19 5856333 5856601 + 0 NA intron (ENSMUSG00000024816.12, intron 10 of 10) protein_coding-intron (ENSMUSG00000024816.12, intron 10 of 10) 10844 ENSMUSG00000043488.5 ENSMUSG00000043488 ENSMUST00000135347 Frmd8os antisense Interval_23691 chr11 24628550 24629542 + 0 NA intron (ENSMUSG00000087085.1, intron 2 of 3) lincRNA-intron (ENSMUSG00000087085.1, intron 2 of 3) 50665 ENSMUSG00000080631.1 ENSMUSG00000080631 ENSMUST00000116981 Gm25507 miRNA Interval_16632 chr10 66590947 66591170 + 0 NA Intergenic Intergenic -49860 ENSMUSG00000101338.1 ENSMUSG00000101338 ENSMUST00000189480 Gm28139 lincRNA Interval_88831 chr2 11520582 11521756 + 0 NA promoter-TSS (ENSMUSG00000102329.1) antisense-promoter-TSS (ENSMUSG00000102329.1) -537 ENSMUSG00000102329.1 ENSMUSG00000102329 ENSMUST00000192087 Gm10851 antisense Interval_140145 chr6 114833367 114833721 + 0 NA intron (ENSMUSG00000030314.16, intron 20 of 20) protein_coding-intron (ENSMUSG00000030314.16, intron 18 of 18) 44154 ENSMUSG00000107395.1 ENSMUSG00000107395 ENSMUST00000203217 Gm44331 processed_pseudogene Interval_45684 chr13 56895436 56895920 + 0 NA promoter-TSS (ENSMUSG00000021541.14) protein_coding-promoter-TSS (ENSMUSG00000021541.14) 59 ENSMUSG00000021541.14 ENSMUSG00000021541 ENSMUST00000173817 Trpc7 protein_coding Interval_62199 chr15 88750958 88752339 + 0 NA promoter-TSS (ENSMUSG00000034333.15) protein_coding-promoter-TSS (ENSMUSG00000034333.15) -112 ENSMUSG00000034333.15 ENSMUSG00000034333 ENSMUST00000160975 Zbed4 protein_coding Interval_126586 chr5 90488715 90489093 + 0 NA Intergenic Intergenic -18527 ENSMUSG00000054932.6 ENSMUSG00000054932 ENSMUST00000202209 Afp protein_coding Interval_141989 chr6 136405996 136406184 + 0 NA intron (ENSMUSG00000045291.8, intron 1 of 1) protein_coding-intron (ENSMUSG00000045291.8, intron 1 of 1) 9479 ENSMUSG00000045291.8 ENSMUSG00000045291 ENSMUST00000203392 E330021D16Rik protein_coding Interval_103186 chr3 36475218 36476533 + 0 NA promoter-TSS (ENSMUSG00000027712.13) protein_coding-promoter-TSS (ENSMUSG00000027712.13) -62 ENSMUSG00000027713.6 ENSMUSG00000027713 ENSMUST00000029268 1810062G17Rik protein_coding Interval_110561 chr4 3916214 3916980 + 0 NA intron (ENSMUSG00000003282.9, intron 1 of 3) protein_coding-intron (ENSMUSG00000003282.9, intron 1 of 5) 21826 ENSMUSG00000003282.9 ENSMUSG00000003282 ENSMUST00000147035 Plag1 protein_coding Interval_166367 chr9 58672134 58672921 + 0 NA intron (ENSMUSG00000074269.10, intron 2 of 2) protein_coding-intron (ENSMUSG00000074269.10, intron 2 of 5) -8258 ENSMUSG00000074269.10 ENSMUSG00000074269 ENSMUST00000186960 Rec114 protein_coding Interval_9185 chr1 154842753 154844107 + 0 NA intron (ENSMUSG00000004110.17, intron 1 of 3) protein_coding-intron (ENSMUSG00000004110.17, intron 1 of 3) -26489 ENSMUSG00000004110.17 ENSMUSG00000004110 ENSMUST00000186256 Cacna1e protein_coding Interval_20173 chr10 115404121 115404841 + 0 NA intron (ENSMUSG00000034163.10, intron 7 of 34) protein_coding-intron (ENSMUSG00000034163.10, intron 7 of 34) 9731 ENSMUSG00000112822.1 ENSMUSG00000112822 ENSMUST00000218674 A130012E19Rik TEC Interval_79501 chr18 32422851 32423931 + 0 NA intron (ENSMUSG00000024381.16, intron 9 of 13) protein_coding-intron (ENSMUSG00000024381.16, intron 10 of 18) -39188 ENSMUSG00000109232.1 ENSMUSG00000109232 ENSMUST00000207413 Gm44577 bidirectional_promoter_lncRNA Interval_63652 chr15 102574005 102574271 + 0 NA intron (ENSMUSG00000099083.7, intron 2 of 2) protein_coding-intron (ENSMUSG00000099083.7, intron 2 of 10) -49196 ENSMUSG00000023052.8 ENSMUSG00000023052 ENSMUST00000184659 Npff protein_coding Interval_70352 chr17 8907332 8908021 + 0 NA intron (ENSMUSG00000023868.17, intron 2 of 7) protein_coding-intron (ENSMUSG00000023868.17, intron 2 of 21) -80666 ENSMUSG00000023873.13 ENSMUSG00000023873 ENSMUST00000136954 1700010I14Rik protein_coding Interval_107993 chr3 119127902 119128604 + 0 NA intron (ENSMUSG00000033308.16, intron 14 of 22) protein_coding-intron (ENSMUSG00000033308.16, intron 14 of 22) 260009 ENSMUSG00000106542.1 ENSMUSG00000106542 ENSMUST00000197510 Gm43410 TEC Interval_102595 chr3 28107498 28108369 + 0 NA intron (ENSMUSG00000027695.16, intron 15 of 21) protein_coding-intron (ENSMUSG00000027695.16, intron 20 of 25) 28743 ENSMUSG00000027695.16 ENSMUSG00000027695 ENSMUST00000126594 Pld1 protein_coding Interval_53662 chr14 60709085 60709702 + 0 NA intron (ENSMUSG00000021990.16, intron 3 of 12) protein_coding-intron (ENSMUSG00000021990.16, intron 3 of 12) -23513 ENSMUSG00000021990.16 ENSMUSG00000021990 ENSMUST00000162939 Spata13 protein_coding Interval_52880 chr14 51720218 51720426 + 0 NA Intergenic Intergenic -3139 ENSMUSG00000068506.3 ENSMUSG00000068506 ENSMUST00000095916 Gm5800 protein_coding Interval_60264 chr15 71483375 71483617 + 0 NA intron (ENSMUSG00000036800.8, intron 9 of 19) protein_coding-intron (ENSMUSG00000036800.8, intron 9 of 19) 173662 ENSMUSG00000116355.1 ENSMUSG00000116355 ENSMUST00000229873 Gm5217 processed_pseudogene Interval_33064 chr11 114072170 114072663 + 0 NA Intergenic Intergenic -18990 ENSMUSG00000086760.1 ENSMUSG00000086760 ENSMUST00000129365 1700025D23Rik lincRNA Interval_72007 chr17 27554951 27557943 + 0 NA promoter-TSS (ENSMUSG00000046711.16) protein_coding-promoter-TSS (ENSMUSG00000046711.16) 71 ENSMUSG00000116657.1 ENSMUSG00000116657 ENSMUST00000231483 Gm49774 antisense Interval_142595 chr6 143780821 143782117 + 0 NA Intergenic Intergenic -130181 ENSMUSG00000086887.1 ENSMUSG00000086887 ENSMUST00000150559 1700060C16Rik lincRNA Interval_45605 chr13 56199625 56199945 + 0 NA Intergenic Intergenic 3152 ENSMUSG00000114341.1 ENSMUSG00000114341 ENSMUST00000225940 Gm47104 processed_pseudogene Interval_104060 chr3 57825009 57825716 + 0 NA exon (ENSMUSG00000036503.13, exon 9 of 9) protein_coding-exon (ENSMUSG00000036503.13, exon 9 of 9) -15105 ENSMUSG00000106006.1 ENSMUSG00000106006 ENSMUST00000198536 Gm17951 processed_pseudogene Interval_58464 chr15 34878472 34878925 + 0 NA intron (ENSMUSG00000022329.15, intron 10 of 10) protein_coding-intron (ENSMUSG00000022329.15, intron 10 of 10) 40649 ENSMUSG00000050963.7 ENSMUSG00000050963 ENSMUST00000228725 Kcns2 protein_coding Interval_70616 chr17 12363510 12364661 + 0 NA Intergenic Intergenic 7603 ENSMUSG00000117197.1 ENSMUSG00000117197 ENSMUST00000232948 Gm6618 processed_pseudogene Interval_3690 chr1 60856295 60856556 + 0 NA Intergenic Intergenic -23913 ENSMUSG00000102549.1 ENSMUSG00000102549 ENSMUST00000193735 Gm38137 TEC Interval_73394 chr17 36951109 36952059 + 0 NA promoter-TSS (ENSMUSG00000036398.13) protein_coding-promoter-TSS (ENSMUSG00000036398.13) 157 ENSMUSG00000036398.13 ENSMUSG00000036398 ENSMUST00000173540 Ppp1r11 protein_coding Interval_32012 chr11 104441510 104443192 + 0 NA promoter-TSS (ENSMUSG00000018412.16) protein_coding-promoter-TSS (ENSMUSG00000018412.16) -17051 ENSMUSG00000106014.1 ENSMUSG00000106014 ENSMUST00000195891 Gm47315 miRNA Interval_72196 chr17 28529243 28529589 + 0 NA intron (ENSMUSG00000117131.1, intron 2 of 2) bidirectional_promoter_lncRNA-intron (ENSMUSG00000117131.1, intron 2 of 2) 1318 ENSMUSG00000117131.1 ENSMUSG00000117131 ENSMUST00000232740 Gm41506 bidirectional_promoter_lncRNA Interval_120069 chr4 141634045 141634337 + 0 NA intron (ENSMUSG00000028917.14, intron 4 of 4) protein_coding-intron (ENSMUSG00000028917.14, intron 8 of 19) -3144 ENSMUSG00000028917.14 ENSMUSG00000028917 ENSMUST00000141844 Plekhm2 protein_coding Interval_73965 chr17 45731072 45731642 + 0 NA Intergenic Intergenic 2487 ENSMUSG00000094690.2 ENSMUSG00000094690 ENSMUST00000178179 1600014C23Rik protein_coding Interval_88 GL456221.1 85603 87816 + 0 NA NA NA NA NA Interval_88678 chr2 9646586 9647399 + 0 NA Intergenic Intergenic -15651 ENSMUSG00000104276.1 ENSMUSG00000104276 ENSMUST00000191950 Gm37866 TEC Interval_74055 chr17 46310054 46310720 + 0 NA exon (ENSMUSG00000032842.13, exon 12 of 20) protein_coding-exon (ENSMUSG00000032842.13, exon 12 of 20) 12966 ENSMUSG00000047428.14 ENSMUSG00000047428 ENSMUST00000170271 Dlk2 protein_coding Interval_67476 chr16 49504287 49505076 + 0 NA Intergenic Intergenic 79875 ENSMUSG00000097959.2 ENSMUSG00000097959 ENSMUST00000183137 Gm6931 processed_pseudogene Interval_49161 chr13 108881961 108882403 + 0 NA intron (ENSMUSG00000021699.17, intron 1 of 15) protein_coding-intron (ENSMUSG00000021699.17, intron 2 of 16) 22016 ENSMUSG00000021699.17 ENSMUSG00000021699 ENSMUST00000155459 Pde4d protein_coding Interval_28775 chr11 78245334 78246497 + 0 NA promoter-TSS (ENSMUSG00000002052.6) protein_coding-promoter-TSS (ENSMUSG00000002052.6) -4506 ENSMUSG00000002064.10 ENSMUSG00000002064 ENSMUST00000133020 Sdf2 protein_coding Interval_45082 chr13 51963783 51965130 + 0 NA Intergenic Intergenic -8758 ENSMUSG00000097495.1 ENSMUSG00000097495 ENSMUST00000181851 Gm26651 lincRNA Interval_45698 chr13 57040173 57040487 + 0 NA Intergenic Intergenic -109382 ENSMUSG00000077279.1 ENSMUSG00000077279 ENSMUST00000104091 Gm22777 snoRNA Interval_3171 chr1 54426242 54426489 + 0 NA TTS (ENSMUSG00000041303.7) protein_coding-TTS (ENSMUSG00000041303.7) -2311 ENSMUSG00000041303.7 ENSMUSG00000041303 ENSMUST00000189906 Gtf3c3 protein_coding Interval_146682 chr7 49386212 49386401 + 0 NA intron (ENSMUSG00000052512.17, intron 3 of 4) protein_coding-intron (ENSMUSG00000052512.17, intron 2 of 5) 40212 ENSMUSG00000109051.1 ENSMUSG00000109051 ENSMUST00000208060 Gm44913 TEC Interval_9958 chr1 164375058 164375858 + 0 NA intron (ENSMUSG00000026575.15, intron 1 of 5) protein_coding-intron (ENSMUSG00000026575.15, intron 8 of 12) -49255 ENSMUSG00000103493.1 ENSMUSG00000103493 ENSMUST00000194180 Gm37411 TEC Interval_147886 chr7 75107630 75107854 + 0 NA Intergenic Intergenic 39984 ENSMUSG00000053025.13 ENSMUSG00000053025 ENSMUST00000206236 Sv2b protein_coding Interval_124754 chr5 53673684 53673980 + 0 NA Intergenic Intergenic 33728 ENSMUSG00000029193.7 ENSMUSG00000029193 ENSMUST00000202946 Cckar protein_coding Interval_33978 chr11 119794291 119794756 + 0 NA intron (ENSMUSG00000025583.15, intron 7 of 32) protein_coding-intron (ENSMUSG00000025583.15, intron 7 of 33) 39842 ENSMUSG00000085081.1 ENSMUSG00000085081 ENSMUST00000127450 Rptoros antisense Interval_167440 chr9 69372841 69373037 + 0 NA intron (ENSMUSG00000032238.17, intron 5 of 9) protein_coding-intron (ENSMUSG00000032238.17, intron 6 of 10) -8692 ENSMUSG00000086648.1 ENSMUSG00000086648 ENSMUST00000152570 Gm15511 antisense Interval_83557 chr18 89401217 89401598 + 0 NA intron (ENSMUSG00000073514.4, intron 7 of 7) protein_coding-intron (ENSMUSG00000073514.4, intron 7 of 7) -21790 ENSMUSG00000118274.1 ENSMUSG00000118274 ENSMUST00000236207 Gm50204 processed_pseudogene Interval_68777 chr16 86135894 86136975 + 0 NA Intergenic Intergenic 14242 ENSMUSG00000116556.1 ENSMUSG00000116556 ENSMUST00000231250 1700007H22Rik lincRNA Interval_163370 chr9 21118650 21119037 + 0 NA intron (ENSMUSG00000032175.11, intron 7 of 19) protein_coding-intron (ENSMUSG00000032175.11, intron 7 of 22) 12389 ENSMUSG00000032175.11 ENSMUSG00000032175 ENSMUST00000214615 Tyk2 protein_coding Interval_141911 chr6 135296310 135296796 + 0 NA intron (ENSMUSG00000108276.1, intron 2 of 3) antisense-intron (ENSMUSG00000108276.1, intron 2 of 3) 7194 ENSMUSG00000108276.1 ENSMUSG00000108276 ENSMUST00000203686 Gm36640 antisense Interval_105242 chr3 84155187 84156258 + 0 NA promoter-TSS (ENSMUSG00000033752.7) protein_coding-promoter-TSS (ENSMUSG00000033752.7) 64 ENSMUSG00000033752.7 ENSMUSG00000033752 ENSMUST00000047368 Mnd1 protein_coding Interval_160569 chr8 110766266 110767374 + 0 NA intron (ENSMUSG00000031750.15, intron 1 of 1) protein_coding-intron (ENSMUSG00000031750.15, intron 1 of 6) 11828 ENSMUSG00000090039.1 ENSMUSG00000090039 ENSMUST00000162828 Gm15894 antisense Interval_158511 chr8 84180190 84181177 + 0 NA intron (ENSMUSG00000056155.6, intron 1 of 1) protein_coding-intron (ENSMUSG00000056155.6, intron 1 of 1) -1722 ENSMUSG00000065483.2 ENSMUSG00000065483 ENSMUST00000083549 Mir181c miRNA Interval_19557 chr10 103194042 103195177 + 0 NA intron (ENSMUSG00000019892.13, intron 10 of 25) protein_coding-intron (ENSMUSG00000019892.13, intron 10 of 25) 18828 ENSMUSG00000112622.1 ENSMUSG00000112622 ENSMUST00000220380 Gm47164 TEC Interval_134889 chr6 33174761 33175212 + 0 NA Intergenic Intergenic 73113 ENSMUSG00000082217.1 ENSMUSG00000082217 ENSMUST00000122048 Gm1401 processed_pseudogene Interval_25903 chr11 52433567 52434090 + 0 NA Intergenic Intergenic 28512 ENSMUSG00000080951.1 ENSMUSG00000080951 ENSMUST00000122004 Gm12208 processed_pseudogene Interval_33469 chr11 116704273 116705801 + 0 NA Intergenic Intergenic -10428 ENSMUSG00000057286.6 ENSMUSG00000057286 ENSMUST00000145441 St6galnac2 protein_coding Interval_1535 chr1 25012330 25013295 + 0 NA TTS (ENSMUSG00000100450.1) processed_pseudogene-TTS (ENSMUSG00000100450.1) 871 ENSMUSG00000100450.1 ENSMUSG00000100450 ENSMUST00000188406 Gm9443 processed_pseudogene Interval_23676 chr11 24387860 24388182 + 0 NA Intergenic Intergenic -38225 ENSMUSG00000087085.1 ENSMUSG00000087085 ENSMUST00000153153 Gm12068 lincRNA Interval_24531 chr11 34073519 34074751 + 0 NA intron (ENSMUSG00000002699.13, intron 8 of 19) protein_coding-intron (ENSMUSG00000002699.13, intron 8 of 20) -12869 ENSMUSG00000002699.13 ENSMUSG00000002699 ENSMUST00000146318 Lcp2 protein_coding Interval_118896 chr4 134329856 134330867 + 0 NA TTS (ENSMUSG00000028834.13) protein_coding-TTS (ENSMUSG00000028834.13) 5397 ENSMUSG00000083065.1 ENSMUSG00000083065 ENSMUST00000117229 Gm13195 processed_pseudogene Interval_34459 chr12 4356954 4359876 + 0 NA intron (ENSMUSG00000020647.10, intron 2 of 22) protein_coding-intron (ENSMUSG00000020647.10, intron 2 of 22) 10768 ENSMUSG00000088207.1 ENSMUSG00000088207 ENSMUST00000157582 Gm23756 rRNA Interval_6000 chr1 93827745 93827989 + 0 NA intron (ENSMUSG00000073609.9, intron 1 of 2) protein_coding-intron (ENSMUSG00000073609.9, intron 2 of 9) 1582 ENSMUSG00000073609.9 ENSMUSG00000073609 ENSMUST00000188532 D2hgdh protein_coding Interval_77636 chr17 93403750 93404596 + 0 NA Intergenic Intergenic -12475 ENSMUSG00000117368.1 ENSMUSG00000117368 ENSMUST00000234726 Gm50001 processed_pseudogene Interval_124184 chr5 39482442 39482659 + 0 NA intron (ENSMUSG00000106741.3, intron 3 of 5) lincRNA-intron (ENSMUSG00000106741.3, intron 4 of 4) 24453 ENSMUSG00000106679.1 ENSMUSG00000106679 ENSMUST00000202881 Gm42524 lincRNA Interval_81556 chr18 61675507 61676234 + 0 NA Intergenic Intergenic -9017 ENSMUSG00000024578.3 ENSMUSG00000024578 ENSMUST00000025471 Il17b protein_coding Interval_51055 chr14 21841227 21842286 + 0 NA promoter-TSS (ENSMUSG00000021771.14) protein_coding-promoter-TSS (ENSMUSG00000021771.14) -5822 ENSMUSG00000090564.9 ENSMUSG00000090564 ENSMUST00000169054 A430057M04Rik antisense Interval_131574 chr5 138215779 138217817 + 0 NA Intergenic Intergenic -2939 ENSMUSG00000084469.1 ENSMUSG00000084469 ENSMUST00000122520 Gm22956 snRNA Interval_19419 chr10 99106675 99108817 + 0 NA promoter-TSS (ENSMUSG00000090035.3) protein_coding-promoter-TSS (ENSMUSG00000090035.3) -38 ENSMUSG00000019952.15 ENSMUSG00000019952 ENSMUST00000162847 Poc1b protein_coding Interval_135459 chr6 39437685 39438016 + 0 NA Intergenic Intergenic -15431 ENSMUSG00000064900.1 ENSMUSG00000064900 ENSMUST00000082966 Gm25402 snoRNA Interval_103791 chr3 53004487 53004958 + 0 NA intron (ENSMUSG00000027742.13, intron 8 of 18) protein_coding-intron (ENSMUSG00000027742.13, intron 8 of 18) 12496 ENSMUSG00000027742.13 ENSMUSG00000027742 ENSMUST00000193043 Cog6 protein_coding Interval_133357 chr6 3625413 3625602 + 0 NA Intergenic Intergenic 37456 ENSMUSG00000001376.17 ENSMUSG00000001376 ENSMUST00000184411 Vps50 protein_coding Interval_123822 chr5 35757203 35758674 + 0 NA promoter-TSS (ENSMUSG00000029095.17) protein_coding-promoter-TSS (ENSMUSG00000029095.17) -17951 ENSMUSG00000036553.16 ENSMUSG00000036553 ENSMUST00000154118 Sh3tc1 protein_coding Interval_63515 chr15 101588025 101588479 + 0 NA intron (ENSMUSG00000115983.1, intron 1 of 2) unprocessed_pseudogene-intron (ENSMUSG00000115983.1, intron 1 of 2) 291 ENSMUSG00000115983.1 ENSMUSG00000115983 ENSMUST00000230770 Gm5476 unprocessed_pseudogene Interval_158256 chr8 80618675 80619392 + 0 NA intron (ENSMUSG00000042353.9, intron 2 of 7) protein_coding-intron (ENSMUSG00000042353.9, intron 2 of 7) 7953 ENSMUSG00000042353.9 ENSMUSG00000042353 ENSMUST00000039695 Frem3 protein_coding Interval_23876 chr11 27436838 27437893 + 0 NA Intergenic Intergenic -18979 ENSMUSG00000080735.1 ENSMUSG00000080735 ENSMUST00000117426 Gm12075 processed_pseudogene Interval_116780 chr4 117261333 117263092 + 0 NA intron (ENSMUSG00000048772.15, intron 2 of 3) protein_coding-intron (ENSMUSG00000048772.15, intron 1 of 2) 10150 ENSMUSG00000048772.15 ENSMUSG00000048772 ENSMUST00000145836 Tmem53 protein_coding Interval_9834 chr1 162813785 162814008 + 0 NA promoter-TSS (ENSMUSG00000026692.12) protein_coding-promoter-TSS (ENSMUSG00000026692.12) -5422 ENSMUSG00000026692.12 ENSMUSG00000026692 ENSMUST00000140274 Fmo4 protein_coding Interval_168710 chr9 86191037 86191384 + 0 NA Intergenic Intergenic -15195 ENSMUSG00000111418.1 ENSMUSG00000111418 ENSMUST00000216119 Gm18016 processed_pseudogene Interval_100287 chr2 168169024 168170616 + 0 NA intron (ENSMUSG00000118526.2, intron 7 of 7) unitary_pseudogene-intron (ENSMUSG00000118526.2, intron 7 of 7) 8432 ENSMUSG00000092923.1 ENSMUSG00000092923 ENSMUST00000175182 Gm24561 miRNA Interval_117991 chr4 127509979 127510211 + 0 NA intron (ENSMUSG00000087470.2, intron 2 of 4) lincRNA-intron (ENSMUSG00000087470.2, intron 2 of 5) 35193 ENSMUSG00000087470.2 ENSMUSG00000087470 ENSMUST00000146587 A630031M04Rik lincRNA Interval_102305 chr3 21553229 21554186 + 0 NA Intergenic Intergenic -50103 ENSMUSG00000106085.1 ENSMUSG00000106085 ENSMUST00000199468 Gm43675 unprocessed_pseudogene Interval_109675 chr3 145937681 145938873 + 0 NA promoter-TSS (ENSMUSG00000036873.13) protein_coding-promoter-TSS (ENSMUSG00000036873.13) -8 ENSMUSG00000036873.13 ENSMUSG00000036873 ENSMUST00000188034 2410004B18Rik protein_coding Interval_107314 chr3 105718367 105718724 + 0 NA TTS (ENSMUSG00000048458.8) protein_coding-TTS (ENSMUSG00000048458.8) 8602 ENSMUSG00000106317.1 ENSMUSG00000106317 ENSMUST00000198060 Gm43848 lincRNA Interval_68773 chr16 86068048 86068406 + 0 NA Intergenic Intergenic 52772 ENSMUSG00000116669.1 ENSMUSG00000116669 ENSMUST00000232085 Gm49570 processed_pseudogene Interval_17775 chr10 80013282 80015211 + 0 NA exon (ENSMUSG00000035722.15, exon 43 of 46) protein_coding-exon (ENSMUSG00000035722.15, exon 43 of 46) -7497 ENSMUSG00000035697.14 ENSMUSG00000035697 ENSMUST00000150022 Arhgap45 protein_coding Interval_122264 chr5 20784948 20785160 + 0 NA intron (ENSMUSG00000039987.15, intron 3 of 3) protein_coding-intron (ENSMUSG00000039987.15, intron 9 of 17) -21036 ENSMUSG00000082716.1 ENSMUSG00000082716 ENSMUST00000118086 Rpl31-ps5 processed_pseudogene Interval_46352 chr13 64152226 64154145 + 0 NA promoter-TSS (ENSMUSG00000044934.13) protein_coding-promoter-TSS (ENSMUSG00000044934.13) 604 ENSMUSG00000114165.1 ENSMUSG00000114165 ENSMUST00000221450 Gm47513 TEC Interval_16775 chr10 68091014 68092476 + 0 NA TTS (ENSMUSG00000019947.10) protein_coding-TTS (ENSMUSG00000019947.10) -65119 ENSMUSG00000086838.1 ENSMUSG00000086838 ENSMUST00000143555 Gm16212 antisense Interval_141117 chr6 125088623 125091467 + 0 NA Intergenic Intergenic -6132 ENSMUSG00000063870.12 ENSMUSG00000063870 ENSMUST00000132794 Chd4 protein_coding Interval_172576 chrX 36929833 36931031 + 0 NA intron (ENSMUSG00000050379.15, intron 6 of 9) protein_coding-intron (ENSMUSG00000050379.15, intron 6 of 10) 19598 ENSMUSG00000087155.1 ENSMUSG00000087155 ENSMUST00000147429 Gm15008 antisense Interval_118730 chr4 133419238 133420151 + 0 NA promoter-TSS (ENSMUSG00000028854.9) protein_coding-promoter-TSS (ENSMUSG00000028854.9) 3388 ENSMUSG00000028854.9 ENSMUSG00000028854 ENSMUST00000141658 Slc9a1 protein_coding Interval_126616 chr5 90964243 90964951 + 0 NA intron (ENSMUSG00000029376.8, intron 4 of 4) protein_coding-intron (ENSMUSG00000029376.8, intron 5 of 7) 33480 ENSMUSG00000029376.8 ENSMUSG00000029376 ENSMUST00000201851 Mthfd2l protein_coding Interval_115410 chr4 98733591 98734652 + 0 NA TTS (ENSMUSG00000087166.9) protein_coding-TTS (ENSMUSG00000087166.9) 918 ENSMUSG00000087166.9 ENSMUSG00000087166 ENSMUST00000173659 L1td1 protein_coding Interval_101189 chr2 179192340 179194272 + 0 NA Intergenic Intergenic 15881 ENSMUSG00000061897.5 ENSMUSG00000061897 ENSMUST00000118761 Gm14292 processed_pseudogene Interval_141343 chr6 127462563 127463849 + 0 NA intron (ENSMUSG00000037997.12, intron 1 of 5) protein_coding-intron (ENSMUSG00000037997.12, intron 1 of 8) -8321 ENSMUSG00000037997.12 ENSMUSG00000037997 ENSMUST00000134018 Parp11 protein_coding Interval_113125 chr4 48510405 48512022 + 0 NA Intergenic Intergenic -29333 ENSMUSG00000039693.11 ENSMUSG00000039693 ENSMUST00000132360 Msantd3 protein_coding Interval_55508 chr14 89621073 89621317 + 0 NA Intergenic Intergenic -85610 ENSMUSG00000077408.1 ENSMUSG00000077408 ENSMUST00000104220 Gm25415 snoRNA Interval_60453 chr15 73838671 73840168 + 0 NA intron (ENSMUSG00000086361.1, intron 3 of 3) protein_coding-intron (ENSMUSG00000072487.11, intron 1 of 10) 4858 ENSMUSG00000086361.1 ENSMUSG00000086361 ENSMUST00000154520 Gm6569 protein_coding Interval_133849 chr6 13368076 13368292 + 0 NA Intergenic Intergenic -45153 ENSMUSG00000101894.1 ENSMUSG00000101894 ENSMUST00000186770 1700016P04Rik lincRNA Interval_41258 chr12 112184330 112185029 + 0 NA Intergenic Intergenic 5525 ENSMUSG00000021294.7 ENSMUSG00000021294 ENSMUST00000183816 Kif26a protein_coding Interval_50786 chr14 19836934 19837404 + 0 NA Intergenic Intergenic -1756 ENSMUSG00000114350.1 ENSMUSG00000114350 ENSMUST00000225736 D14Ertd670e lincRNA Interval_141081 chr6 124856502 124857746 + 0 NA intron (ENSMUSG00000023191.9, intron 1 of 13) protein_coding-intron (ENSMUSG00000023191.9, intron 1 of 14) -2200 ENSMUSG00000023191.9 ENSMUSG00000023191 ENSMUST00000135546 P3h3 protein_coding Interval_115827 chr4 105092546 105092767 + 0 NA intron (ENSMUSG00000028518.8, intron 1 of 8) protein_coding-intron (ENSMUSG00000028518.8, intron 1 of 8) 17234 ENSMUSG00000028518.8 ENSMUSG00000028518 ENSMUST00000030243 Prkaa2 protein_coding Interval_75900 chr17 72880201 72880399 + 0 NA Intergenic Intergenic -40888 ENSMUSG00000024063.13 ENSMUSG00000024063 ENSMUST00000148556 Lbh protein_coding Interval_169218 chr9 95609858 95610951 + 0 NA Intergenic Intergenic 12015 ENSMUSG00000101936.1 ENSMUSG00000101936 ENSMUST00000190143 Gm28164 processed_pseudogene Interval_173781 chrX 104044122 104044308 + 0 NA Intergenic Intergenic 26111 ENSMUSG00000077199.2 ENSMUSG00000077199 ENSMUST00000104011 Gm22266 snoRNA Interval_109293 chr3 138727145 138727610 + 0 NA promoter-TSS (ENSMUSG00000105838.1) lincRNA-promoter-TSS (ENSMUSG00000105838.1) -393 ENSMUSG00000105838.1 ENSMUSG00000105838 ENSMUST00000197761 4930425O10Rik lincRNA Interval_7719 chr1 133255660 133255886 + 0 NA promoter-TSS (ENSMUSG00000041757.17) protein_coding-promoter-TSS (ENSMUSG00000041757.17) -769 ENSMUSG00000041757.17 ENSMUSG00000041757 ENSMUST00000190208 Plekha6 protein_coding Interval_42643 chr13 17675711 17676329 + 0 NA intron (ENSMUSG00000055137.7, intron 1 of 13) protein_coding-intron (ENSMUSG00000055137.7, intron 1 of 13) 18717 ENSMUSG00000055137.7 ENSMUSG00000055137 ENSMUST00000221467 Sugct protein_coding Interval_132221 chr5 143412962 143413289 + 0 NA intron (ENSMUSG00000079111.3, intron 2 of 4) protein_coding-intron (ENSMUSG00000079111.3, intron 2 of 4) 9287 ENSMUSG00000079111.3 ENSMUSG00000079111 ENSMUST00000110731 Kdelr2 protein_coding Interval_8809 chr1 151323229 151323438 + 0 NA Intergenic Intergenic 21403 ENSMUSG00000100954.4 ENSMUSG00000100954 ENSMUST00000206952 Gm10138 antisense Interval_150731 chr7 113908757 113910335 + 0 NA intron (ENSMUSG00000038156.16, intron 5 of 5) protein_coding-intron (ENSMUSG00000038156.16, intron 5 of 15) 143372 ENSMUSG00000038156.16 ENSMUSG00000038156 ENSMUST00000084696 Spon1 protein_coding Interval_47833 chr13 93631702 93632829 + 0 NA intron (ENSMUSG00000074768.6, intron 2 of 3) protein_coding-intron (ENSMUSG00000074768.6, intron 2 of 7) 5301 ENSMUSG00000074768.6 ENSMUSG00000074768 ENSMUST00000124193 Bhmt protein_coding Interval_120545 chr4 149269328 149270264 + 0 NA intron (ENSMUSG00000063077.15, intron 7 of 49) protein_coding-intron (ENSMUSG00000063077.15, intron 7 of 20) 37896 ENSMUSG00000063077.15 ENSMUSG00000063077 ENSMUST00000132072 Kif1b protein_coding Interval_80343 chr18 39636297 39636710 + 0 NA promoter-TSS (ENSMUSG00000118117.1) lincRNA-promoter-TSS (ENSMUSG00000118117.1) 97 ENSMUSG00000118117.1 ENSMUSG00000118117 ENSMUST00000237284 Gm30961 lincRNA Interval_172060 chr9 124138299 124138754 + 0 NA intron (ENSMUSG00000079227.10, intron 2 of 2) protein_coding-intron (ENSMUSG00000079227.10, intron 2 of 2) 11842 ENSMUSG00000079227.10 ENSMUSG00000079227 ENSMUST00000097855 Ccr5 protein_coding Interval_152820 chr7 138336524 138336945 + 0 NA intron (ENSMUSG00000091002.2, intron 4 of 6) protein_coding-intron (ENSMUSG00000091002.2, intron 4 of 11) 60996 ENSMUSG00000091002.2 ENSMUSG00000091002 ENSMUST00000162222 Tcerg1l protein_coding Interval_69308 chr16 92103342 92104520 + 0 NA intron (ENSMUSG00000116930.1, intron 2 of 3) protein_coding-intron (ENSMUSG00000039680.10, intron 2 of 2) 9363 ENSMUSG00000086331.1 ENSMUSG00000086331 ENSMUST00000124376 Gm16310 sense_intronic Interval_46415 chr13 64973315 64974261 + 0 NA Intergenic Intergenic -25146 ENSMUSG00000113807.1 ENSMUSG00000113807 ENSMUST00000221983 Gm6888 processed_pseudogene Interval_6243 chr1 104255840 104256311 + 0 NA Intergenic Intergenic -55646 ENSMUSG00000101297.1 ENSMUSG00000101297 ENSMUST00000187501 Gm18447 processed_pseudogene Interval_42383 chr13 12499873 12500159 + 0 NA intron (ENSMUSG00000095105.2, intron 4 of 5) protein_coding-intron (ENSMUSG00000095105.2, intron 4 of 5) 20422 ENSMUSG00000095105.2 ENSMUSG00000095105 ENSMUST00000179308 Edaradd protein_coding Interval_84878 chr19 18573568 18574316 + 0 NA intron (ENSMUSG00000024725.13, intron 9 of 10) protein_coding-intron (ENSMUSG00000024725.13, intron 9 of 10) -7513 ENSMUSG00000080783.1 ENSMUSG00000080783 ENSMUST00000117398 Gm8250 processed_pseudogene Interval_159192 chr8 91531670 91533036 + 0 NA exon (ENSMUSG00000109709.1, exon 1 of 1) TEC-exon (ENSMUSG00000109709.1, exon 1 of 1) 371 ENSMUSG00000109709.1 ENSMUSG00000109709 ENSMUST00000211177 Gm45290 TEC Interval_146275 chr7 45088482 45088821 + 0 NA promoter-TSS (ENSMUSG00000019539.11) protein_coding-promoter-TSS (ENSMUSG00000019539.11) -44 ENSMUSG00000019539.11 ENSMUSG00000019539 ENSMUST00000210355 Rcn3 protein_coding Interval_147736 chr7 73160898 73161440 + 0 NA Intergenic Intergenic 24224 ENSMUSG00000101843.1 ENSMUSG00000101843 ENSMUST00000187453 Gm28746 lincRNA Interval_2121 chr1 36569840 36570765 + 0 NA intron (ENSMUSG00000046337.17, intron 4 of 5) protein_coding-intron (ENSMUSG00000046337.17, intron 12 of 14) 12601 ENSMUSG00000087589.3 ENSMUSG00000087589 ENSMUST00000149224 D430040D24Rik processed_transcript Interval_94684 chr2 93297695 93297977 + 0 NA intron (ENSMUSG00000027217.13, intron 2 of 2) protein_coding-intron (ENSMUSG00000027217.13, intron 2 of 9) 14679 ENSMUSG00000027217.13 ENSMUSG00000027217 ENSMUST00000152141 Tspan18 protein_coding Interval_37562 chr12 69886959 69887271 + 0 NA intron (ENSMUSG00000034761.15, intron 1 of 7) protein_coding-intron (ENSMUSG00000034761.15, intron 1 of 30) 5988 ENSMUSG00000034761.15 ENSMUSG00000034761 ENSMUST00000147451 Map4k5 protein_coding Interval_61894 chr15 84995796 84996461 + 0 NA Intergenic Intergenic -7577 ENSMUSG00000036046.14 ENSMUSG00000036046 ENSMUST00000170863 5031439G07Rik protein_coding Interval_145367 chr7 34266210 34267134 + 0 NA intron (ENSMUSG00000066571.13, intron 2 of 13) protein_coding-intron (ENSMUSG00000066571.13, intron 1 of 12) -15317 ENSMUSG00000108737.1 ENSMUSG00000108737 ENSMUST00000207005 BC060293 TEC Interval_19338 chr10 97118198 97118974 + 0 NA Intergenic Intergenic -12002 ENSMUSG00000112631.1 ENSMUSG00000112631 ENSMUST00000219874 Gm48555 processed_pseudogene Interval_143169 chr7 4123847 4125909 + 0 NA promoter-TSS (ENSMUSG00000030428.16) protein_coding-promoter-TSS (ENSMUSG00000030428.16) -4150 ENSMUSG00000086155.7 ENSMUSG00000086155 ENSMUST00000050989 9430041J12Rik antisense Interval_102188 chr3 19296124 19296519 + 0 NA intron (ENSMUSG00000069094.12, intron 1 of 8) protein_coding-intron (ENSMUSG00000069094.12, intron 1 of 12) 14731 ENSMUSG00000069094.12 ENSMUSG00000069094 ENSMUST00000143120 Pde7a protein_coding Interval_159009 chr8 88761930 88762156 + 0 NA Intergenic Intergenic 26932 ENSMUSG00000036712.15 ENSMUSG00000036712 ENSMUST00000211671 Cyld protein_coding Interval_163361 chr9 21079351 21080289 + 0 NA intron (ENSMUSG00000111497.1, intron 7 of 16) protein_coding-intron (ENSMUSG00000010205.11, intron 7 of 12) -4232 ENSMUSG00000098907.1 ENSMUSG00000098907 ENSMUST00000183526 Mir7082 miRNA Interval_51090 chr14 22463005 22463192 + 0 NA intron (ENSMUSG00000063458.13, intron 2 of 3) protein_coding-intron (ENSMUSG00000063458.13, intron 2 of 6) 79725 ENSMUSG00000114412.1 ENSMUSG00000114412 ENSMUST00000225587 4930405A10Rik antisense Interval_172182 chrX 8251985 8253178 + 0 NA promoter-TSS (ENSMUSG00000031171.11) protein_coding-promoter-TSS (ENSMUSG00000031171.11) -6225 ENSMUSG00000031171.11 ENSMUSG00000031171 ENSMUST00000147467 Ftsj1 protein_coding Interval_12893 chr10 7809690 7810553 + 0 NA intron (ENSMUSG00000015757.10, intron 10 of 12) protein_coding-intron (ENSMUSG00000015757.10, intron 10 of 12) -1363 ENSMUSG00000081497.1 ENSMUSG00000081497 ENSMUST00000117107 Gm15560 processed_pseudogene Interval_27895 chr11 70687042 70688484 + 0 NA TTS (ENSMUSG00000057054.11) protein_coding-TTS (ENSMUSG00000057054.11) 185 ENSMUSG00000040712.16 ENSMUSG00000040712 ENSMUST00000150224 Camta2 protein_coding Interval_130180 chr5 124780636 124780850 + 0 NA intron (ENSMUSG00000038011.15, intron 34 of 77) protein_coding-intron (ENSMUSG00000038011.15, intron 35 of 78) -5810 ENSMUSG00000038011.15 ENSMUSG00000038011 ENSMUST00000196708 Dnah10 protein_coding Interval_42688 chr13 17961479 17961689 + 0 NA promoter-TSS (ENSMUSG00000114077.1) transcribed_processed_pseudogene-promoter-TSS (ENSMUSG00000114077.1) -168 ENSMUSG00000114077.1 ENSMUSG00000114077 ENSMUST00000221430 Gm48776 transcribed_processed_pseudogene Interval_65245 chr16 20818478 20820290 + 0 NA promoter-TSS (ENSMUSG00000116721.1) processed_pseudogene-promoter-TSS (ENSMUSG00000116721.1) -997 ENSMUSG00000116721.1 ENSMUSG00000116721 ENSMUST00000231573 Gm9536 processed_pseudogene Interval_102818 chr3 31442046 31442830 + 0 NA Intergenic Intergenic 101426 ENSMUSG00000103998.1 ENSMUSG00000103998 ENSMUST00000193926 Gm38025 lincRNA Interval_131916 chr5 140767646 140768679 + 0 NA intron (ENSMUSG00000000149.10, intron 2 of 3) protein_coding-intron (ENSMUSG00000000149.10, intron 2 of 3) 44024 ENSMUSG00000050022.16 ENSMUSG00000050022 ENSMUST00000176035 Amz1 protein_coding Interval_149120 chr7 94215311 94215945 + 0 NA intron (ENSMUSG00000108532.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000108532.1, intron 1 of 1) 18418 ENSMUSG00000096033.2 ENSMUSG00000096033 ENSMUST00000071770 Gm5899 processed_pseudogene Interval_55434 chr14 87241203 87241935 + 0 NA Intergenic Intergenic -41495 ENSMUSG00000102284.1 ENSMUSG00000102284 ENSMUST00000194560 Gm37002 TEC Interval_46606 chr13 67525609 67526519 + 0 NA promoter-TSS (ENSMUSG00000097565.1) protein_coding-promoter-TSS (ENSMUSG00000097565.1) 87 ENSMUSG00000097565.1 ENSMUSG00000097565 ENSMUST00000167914 Gm26965 protein_coding Interval_57012 chr15 4056564 4056760 + 0 NA intron (ENSMUSG00000022186.14, intron 5 of 15) protein_coding-intron (ENSMUSG00000022186.14, intron 5 of 16) 15370 ENSMUSG00000086297.1 ENSMUSG00000086297 ENSMUST00000135936 Gm15632 antisense Interval_158895 chr8 87790598 87790908 + 0 NA intron (ENSMUSG00000045333.15, intron 3 of 3) protein_coding-intron (ENSMUSG00000045333.15, intron 2 of 6) 154096 ENSMUSG00000089301.1 ENSMUSG00000089301 ENSMUST00000158676 Gm24841 misc_RNA Interval_101528 chr3 3999002 3999175 + 0 NA Intergenic Intergenic 59944 ENSMUSG00000103224.1 ENSMUSG00000103224 ENSMUST00000195017 Gm2077 processed_pseudogene Interval_108479 chr3 127535831 127536302 + 0 NA TTS (ENSMUSG00000027968.11) protein_coding-TTS (ENSMUSG00000027968.11) -9162 ENSMUSG00000076252.1 ENSMUSG00000076252 ENSMUST00000102297 Mir302b miRNA Interval_129687 chr5 121753672 121753922 + 0 NA intron (ENSMUSG00000042605.16, intron 5 of 9) protein_coding-intron (ENSMUSG00000042605.16, intron 5 of 24) 11380 ENSMUSG00000105179.1 ENSMUSG00000105179 ENSMUST00000195919 Gm42866 TEC Interval_160593 chr8 110919364 110920572 + 0 NA promoter-TSS (ENSMUSG00000031749.12) protein_coding-promoter-TSS (ENSMUSG00000031749.12) -3148 ENSMUSG00000065100.1 ENSMUSG00000065100 ENSMUST00000083166 Gm26132 snoRNA Interval_128540 chr5 113907998 113909348 + 0 NA promoter-TSS (ENSMUSG00000004530.12) protein_coding-promoter-TSS (ENSMUSG00000004530.12) -3775 ENSMUSG00000105071.1 ENSMUSG00000105071 ENSMUST00000200487 Gm43336 TEC Interval_158384 chr8 83270952 83271250 + 0 NA TTS (ENSMUSG00000031709.15) protein_coding-TTS (ENSMUSG00000031709.15) 4015 ENSMUSG00000110422.1 ENSMUSG00000110422 ENSMUST00000211568 Gm17999 processed_pseudogene Interval_99165 chr2 157696261 157696620 + 0 NA Intergenic Intergenic 17361 ENSMUSG00000077290.1 ENSMUSG00000077290 ENSMUST00000104102 Gm25407 snoRNA Interval_128473 chr5 113514113 113514936 + 0 NA intron (ENSMUSG00000063430.9, intron 1 of 1) protein_coding-intron (ENSMUSG00000063430.9, intron 1 of 8) -64264 ENSMUSG00000063430.9 ENSMUSG00000063430 ENSMUST00000198673 Wscd2 protein_coding Interval_155897 chr8 40846341 40846864 + 0 NA Intergenic Intergenic 8425 ENSMUSG00000098050.1 ENSMUSG00000098050 ENSMUST00000183076 Gm5345 processed_pseudogene Interval_26122 chr11 54534934 54535568 + 0 NA intron (ENSMUSG00000037533.20, intron 1 of 28) protein_coding-intron (ENSMUSG00000037533.20, intron 1 of 28) 70691 ENSMUSG00000035992.15 ENSMUSG00000035992 ENSMUST00000143650 Fnip1 protein_coding Interval_235 KZ289068.1 242524 243822 + 0 NA NA NA NA NA Interval_21534 chr10 129316877 129317084 + 0 NA Intergenic Intergenic -1137 ENSMUSG00000049573.3 ENSMUSG00000049573 ENSMUST00000063168 Olfr780 protein_coding Interval_75961 chr17 73825351 73825613 + 0 NA intron (ENSMUSG00000024065.8, intron 3 of 5) protein_coding-intron (ENSMUSG00000024065.8, intron 3 of 5) 21348 ENSMUSG00000024065.8 ENSMUSG00000024065 ENSMUST00000024860 Ehd3 protein_coding Interval_27113 chr11 63000314 63000521 + 0 NA exon (ENSMUSG00000087604.7, exon 3 of 3) antisense-exon (ENSMUSG00000087604.7, exon 3 of 3) 3711 ENSMUSG00000087604.7 ENSMUSG00000087604 ENSMUST00000130177 Cdrt4os1 antisense Interval_155291 chr8 30959210 30960629 + 0 NA Intergenic Intergenic -43989 ENSMUSG00000109614.1 ENSMUSG00000109614 ENSMUST00000211579 Gm45252 processed_pseudogene Interval_18319 chr10 84862374 84864010 + 0 NA intron (ENSMUSG00000020037.15, intron 7 of 14) protein_coding-intron (ENSMUSG00000020037.15, intron 6 of 9) -52009 ENSMUSG00000089451.1 ENSMUSG00000089451 ENSMUST00000158826 Gm24226 snRNA Interval_17221 chr10 75092605 75094310 + 0 NA intron (ENSMUSG00000009681.10, intron 1 of 22) protein_coding-intron (ENSMUSG00000009681.10, intron 1 of 22) 56368 ENSMUSG00000020175.15 ENSMUSG00000020175 ENSMUST00000151432 Rab36 protein_coding Interval_40796 chr12 108478703 108478912 + 0 NA intron (ENSMUSG00000058070.14, intron 1 of 18) protein_coding-intron (ENSMUSG00000058070.14, intron 3 of 21) 6954 ENSMUSG00000058070.14 ENSMUSG00000058070 ENSMUST00000123035 Eml1 protein_coding Interval_10413 chr1 170588674 170590822 + 0 NA promoter-TSS (ENSMUSG00000038473.14) protein_coding-promoter-TSS (ENSMUSG00000038473.14) -41173 ENSMUSG00000102193.1 ENSMUSG00000102193 ENSMUST00000194441 Gm7299 processed_pseudogene Interval_134282 chr6 24491348 24492466 + 0 NA intron (ENSMUSG00000046192.4, intron 6 of 12) protein_coding-intron (ENSMUSG00000046192.4, intron 6 of 12) 23160 ENSMUSG00000046192.4 ENSMUSG00000046192 ENSMUST00000052277 Iqub protein_coding Interval_137137 chr6 67941361 67942085 + 0 NA TTS (ENSMUSG00000096632.2) IG_V_gene-TTS (ENSMUSG00000096632.2) 817 ENSMUSG00000096632.2 ENSMUSG00000096632 ENSMUST00000196768 Igkv9-124 IG_V_gene Interval_96107 chr2 119798320 119800545 + 0 NA promoter-TSS (ENSMUSG00000027298.17) protein_coding-promoter-TSS (ENSMUSG00000027298.17) 105 ENSMUSG00000027298.17 ENSMUSG00000027298 ENSMUST00000137135 Tyro3 protein_coding Interval_42255 chr13 11084903 11085273 + 0 NA Intergenic Intergenic 110665 ENSMUSG00000113673.1 ENSMUSG00000113673 ENSMUST00000221075 Gm47486 lincRNA Interval_8112 chr1 135787937 135788867 + 0 NA intron (ENSMUSG00000026418.16, intron 2 of 6) protein_coding-intron (ENSMUSG00000026418.16, intron 2 of 6) 8968 ENSMUSG00000026418.16 ENSMUSG00000026418 ENSMUST00000129217 Tnni1 protein_coding Interval_163288 chr9 20606876 20607912 + 0 NA promoter-TSS (ENSMUSG00000062470.10) antisense-promoter-TSS (ENSMUSG00000062470.10) -64 ENSMUSG00000062470.10 ENSMUSG00000062470 ENSMUST00000054947 Fbxl12os antisense Interval_72216 chr17 28620818 28622953 + 0 NA intron (ENSMUSG00000004865.16, intron 2 of 2) protein_coding-intron (ENSMUSG00000004865.16, intron 2 of 2) 598 ENSMUSG00000004865.16 ENSMUSG00000004865 ENSMUST00000114767 Srpk1 protein_coding Interval_44204 chr13 42077231 42077876 + 0 NA intron (ENSMUSG00000021366.8, intron 2 of 3) protein_coding-intron (ENSMUSG00000021366.8, intron 2 of 8) 28219 ENSMUSG00000100071.1 ENSMUSG00000100071 ENSMUST00000186134 Gm28707 lincRNA Interval_113765 chr4 58449582 58450325 + 0 NA intron (ENSMUSG00000038668.14, intron 3 of 3) protein_coding-intron (ENSMUSG00000038668.14, intron 3 of 3) -8855 ENSMUSG00000093293.1 ENSMUSG00000093293 ENSMUST00000175552 Mir3095 miRNA Interval_54929 chr14 76308299 76308581 + 0 NA Intergenic Intergenic 56983 ENSMUSG00000115625.1 ENSMUSG00000115625 ENSMUST00000227933 2900040C04Rik lincRNA Interval_8748 chr1 150392506 150393849 + 0 NA promoter-TSS (ENSMUSG00000006010.14) protein_coding-promoter-TSS (ENSMUSG00000006010.14) -429 ENSMUSG00000006010.14 ENSMUSG00000006010 ENSMUST00000140112 Odr4 protein_coding Interval_154447 chr8 17645848 17646100 + 0 NA Intergenic Intergenic -110693 ENSMUSG00000060924.15 ENSMUSG00000060924 ENSMUST00000122983 Csmd1 protein_coding Interval_82362 chr18 72918600 72920127 + 0 NA intron (ENSMUSG00000118316.1, intron 2 of 3) lincRNA-intron (ENSMUSG00000118316.1, intron 2 of 3) 1727 ENSMUSG00000118316.1 ENSMUSG00000118316 ENSMUST00000236243 Gm31908 lincRNA Interval_81156 chr18 55066029 55067005 + 0 NA intron (ENSMUSG00000096948.2, intron 1 of 1) antisense-intron (ENSMUSG00000096948.2, intron 4 of 4) 19140 ENSMUSG00000084521.1 ENSMUSG00000084521 ENSMUST00000122572 Gm24183 snoRNA Interval_63972 chr16 4924268 4924714 + 0 NA TTS (ENSMUSG00000022517.17) protein_coding-TTS (ENSMUSG00000022517.17) -14270 ENSMUSG00000022516.10 ENSMUSG00000022516 ENSMUST00000230224 Nudt16l1 protein_coding Interval_31210 chr11 98921924 98922865 + 0 NA TTS (ENSMUSG00000017499.15) protein_coding-TTS (ENSMUSG00000017499.15) 1928 ENSMUSG00000017499.15 ENSMUSG00000017499 ENSMUST00000135862 Cdc6 protein_coding Interval_7603 chr1 132469097 132472766 + 0 NA intron (ENSMUSG00000097760.2, intron 1 of 1) processed_transcript-intron (ENSMUSG00000097760.2, intron 1 of 1) 6133 ENSMUSG00000097760.2 ENSMUSG00000097760 ENSMUST00000188203 6030442K20Rik processed_transcript Interval_81654 chr18 62885390 62886109 + 0 NA Intergenic Intergenic 36352 ENSMUSG00000117671.1 ENSMUSG00000117671 ENSMUST00000237856 Gm50128 bidirectional_promoter_lncRNA Interval_114204 chr4 67233075 67234007 + 0 NA Intergenic Intergenic 68062 ENSMUSG00000081435.1 ENSMUSG00000081435 ENSMUST00000122195 Gm11403 processed_pseudogene Interval_122535 chr5 23641383 23641995 + 0 NA intron (ENSMUSG00000062604.11, intron 1 of 3) protein_coding-intron (ENSMUSG00000062604.11, intron 1 of 3) 32692 ENSMUSG00000088359.1 ENSMUSG00000088359 ENSMUST00000157734 Gm24009 rRNA Interval_1085 chr1 15294352 15294589 + 0 NA intron (ENSMUSG00000092083.4, intron 1 of 2) protein_coding-intron (ENSMUSG00000092083.4, intron 1 of 2) 7216 ENSMUSG00000092083.4 ENSMUSG00000092083 ENSMUST00000170146 Kcnb2 protein_coding Interval_122061 chr5 15781447 15781753 + 0 NA Intergenic Intergenic -16401 ENSMUSG00000106083.1 ENSMUSG00000106083 ENSMUST00000199749 Gm42452 unprocessed_pseudogene Interval_47286 chr13 80747020 80747215 + 0 NA Intergenic Intergenic 138407 ENSMUSG00000089827.1 ENSMUSG00000089827 ENSMUST00000161006 1700023H06Rik processed_transcript Interval_137954 chr6 83702233 83703908 + 0 NA promoter-TSS (ENSMUSG00000098591.1) misc_RNA-promoter-TSS (ENSMUSG00000098591.1) -448 ENSMUSG00000098591.1 ENSMUSG00000098591 ENSMUST00000184163 Gm27631 misc_RNA Interval_87812 chr19 56166539 56166715 + 0 NA Intergenic Intergenic 60317 ENSMUSG00000117695.1 ENSMUSG00000117695 ENSMUST00000238174 Gm31912 lincRNA Interval_80268 chr18 38635941 38637363 + 0 NA intron (ENSMUSG00000118257.1, intron 2 of 2) lincRNA-intron (ENSMUSG00000118257.1, intron 2 of 3) 9365 ENSMUSG00000118257.1 ENSMUSG00000118257 ENSMUST00000134388 9630014M24Rik lincRNA Interval_147299 chr7 65644453 65645513 + 0 NA promoter-TSS (ENSMUSG00000030515.9) protein_coding-promoter-TSS (ENSMUSG00000030515.9) -9197 ENSMUSG00000086232.2 ENSMUSG00000086232 ENSMUST00000211354 Gm7546 transcribed_unprocessed_pseudogene Interval_167822 chr9 72882263 72882562 + 0 NA intron (ENSMUSG00000036030.9, intron 11 of 19) protein_coding-intron (ENSMUSG00000036030.9, intron 11 of 19) -6633 ENSMUSG00000102330.1 ENSMUSG00000102330 ENSMUST00000193259 Gm37234 TEC Interval_8786 chr1 151078727 151079766 + 0 NA Intergenic Intergenic -1204 ENSMUSG00000102628.1 ENSMUSG00000102628 ENSMUST00000193198 Gm37671 TEC Interval_38779 chr12 82274567 82275131 + 0 NA intron (ENSMUSG00000042700.16, intron 3 of 23) protein_coding-intron (ENSMUSG00000042700.16, intron 2 of 22) 105373 ENSMUSG00000042700.16 ENSMUSG00000042700 ENSMUST00000221327 Sipa1l1 protein_coding Interval_106786 chr3 100808293 100808670 + 0 NA Intergenic Intergenic -16978 ENSMUSG00000051076.8 ENSMUSG00000051076 ENSMUST00000054791 Vtcn1 protein_coding Interval_61164 chr15 79609304 79610044 + 0 NA TTS (ENSMUSG00000042564.13) protein_coding-TTS (ENSMUSG00000042564.13) -14881 ENSMUSG00000093223.3 ENSMUSG00000093223 ENSMUST00000175482 Gm27903 miRNA Interval_53823 chr14 62333976 62334852 + 0 NA intron (ENSMUSG00000021932.13, intron 1 of 7) protein_coding-intron (ENSMUSG00000021932.13, intron 1 of 10) 2289 ENSMUSG00000021932.13 ENSMUSG00000021932 ENSMUST00000156608 Rnaseh2b protein_coding Interval_75323 chr17 65867451 65868435 + 0 NA promoter-TSS (ENSMUSG00000024096.17) protein_coding-promoter-TSS (ENSMUSG00000024096.17) 16460 ENSMUSG00000024096.17 ENSMUSG00000024096 ENSMUST00000233784 Ralbp1 protein_coding Interval_27695 chr11 69529989 69531197 + 0 NA intron (ENSMUSG00000005237.14, intron 3 of 13) protein_coding-intron (ENSMUSG00000005237.14, intron 2 of 84) -12204 ENSMUSG00000005237.14 ENSMUSG00000005237 ENSMUST00000154985 Dnah2 protein_coding Interval_154754 chr8 23139516 23139796 + 0 NA promoter-TSS (ENSMUSG00000031543.18) protein_coding-promoter-TSS (ENSMUSG00000031543.18) 379 ENSMUSG00000031543.18 ENSMUSG00000031543 ENSMUST00000130311 Ank1 protein_coding Interval_113116 chr4 48440814 48441180 + 0 NA intron (ENSMUSG00000028345.15, intron 12 of 15) protein_coding-intron (ENSMUSG00000028345.15, intron 11 of 14) 32425 ENSMUSG00000028345.15 ENSMUSG00000028345 ENSMUST00000132911 Tex10 protein_coding Interval_135603 chr6 41395836 41396061 + 0 NA intron (ENSMUSG00000058119.6, intron 2 of 4) protein_coding-intron (ENSMUSG00000058119.6, intron 2 of 4) 3592 ENSMUSG00000058119.6 ENSMUSG00000058119 ENSMUST00000049079 Gm5771 protein_coding Interval_58467 chr15 34891213 34892284 + 0 NA intron (ENSMUSG00000022329.15, intron 10 of 10) protein_coding-intron (ENSMUSG00000022329.15, intron 10 of 10) 53699 ENSMUSG00000050963.7 ENSMUSG00000050963 ENSMUST00000228725 Kcns2 protein_coding Interval_153422 chr7 144624981 144625434 + 0 NA intron (ENSMUSG00000031075.19, intron 12 of 25) protein_coding-intron (ENSMUSG00000031075.19, intron 12 of 24) -42744 ENSMUSG00000031077.7 ENSMUSG00000031077 ENSMUST00000033394 Fadd protein_coding Interval_89418 chr2 20569225 20569542 + 0 NA intron (ENSMUSG00000036617.17, intron 1 of 2) protein_coding-intron (ENSMUSG00000036617.17, intron 3 of 18) 9579 ENSMUSG00000098575.1 ENSMUSG00000098575 ENSMUST00000183963 Gm27446 misc_RNA Interval_96404 chr2 122231539 122231977 + 0 NA Intergenic Intergenic -2991 ENSMUSG00000027227.7 ENSMUSG00000027227 ENSMUST00000110551 Sord protein_coding Interval_151832 chr7 126988394 126990117 + 0 NA intron (ENSMUSG00000030681.18, intron 11 of 14) protein_coding-intron (ENSMUSG00000030681.18, intron 11 of 14) 11022 ENSMUSG00000030682.4 ENSMUSG00000030682 ENSMUST00000206964 Cdipt protein_coding Interval_91204 chr2 35905410 35906784 + 0 NA intron (ENSMUSG00000026885.13, intron 2 of 7) protein_coding-intron (ENSMUSG00000026885.13, intron 3 of 9) 46317 ENSMUSG00000026885.13 ENSMUSG00000026885 ENSMUST00000162172 Ttll11 protein_coding Interval_170027 chr9 103760563 103762365 + 0 NA intron (ENSMUSG00000042757.16, intron 1 of 3) protein_coding-intron (ENSMUSG00000042757.16, intron 1 of 1) 365 ENSMUSG00000042757.16 ENSMUSG00000042757 ENSMUST00000186455 Tmem108 protein_coding Interval_146818 chr7 52203156 52203556 + 0 NA Intergenic Intergenic -16604 ENSMUSG00000109026.1 ENSMUSG00000109026 ENSMUST00000209088 Gm44683 processed_pseudogene Interval_41035 chr12 110724760 110726655 + 0 NA Intergenic Intergenic -12502 ENSMUSG00000037957.14 ENSMUSG00000037957 ENSMUST00000194118 Wdr20 protein_coding Interval_87914 chr19 57078086 57078663 + 0 NA intron (ENSMUSG00000025085.16, intron 4 of 4) protein_coding-intron (ENSMUSG00000025085.16, intron 8 of 25) -141136 ENSMUSG00000025083.18 ENSMUSG00000025083 ENSMUST00000132851 Afap1l2 protein_coding Interval_129887 chr5 122920754 122922200 + 0 NA promoter-TSS (ENSMUSG00000029475.17) protein_coding-promoter-TSS (ENSMUSG00000029475.17) 71 ENSMUSG00000029475.17 ENSMUSG00000029475 ENSMUST00000150543 Kdm2b protein_coding Interval_98199 chr2 149783641 149783901 + 0 NA intron (ENSMUSG00000087029.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000087029.1, intron 1 of 1) 14930 ENSMUSG00000087029.1 ENSMUSG00000087029 ENSMUST00000139471 Gm14133 lincRNA Interval_173901 chrX 108828067 108828272 + 0 NA intron (ENSMUSG00000063663.11, intron 4 of 40) protein_coding-intron (ENSMUSG00000063663.11, intron 4 of 38) -5631 ENSMUSG00000086629.8 ENSMUSG00000086629 ENSMUST00000124329 2810403D21Rik processed_transcript Interval_80435 chr18 42202535 42203842 + 0 NA intron (ENSMUSG00000024493.9, intron 4 of 4) protein_coding-intron (ENSMUSG00000024493.9, intron 31 of 31) 2445 ENSMUSG00000117753.1 ENSMUSG00000117753 ENSMUST00000236748 Gm5504 processed_pseudogene Interval_129850 chr5 122743789 122744534 + 0 NA promoter-TSS (ENSMUSG00000029471.13) protein_coding-promoter-TSS (ENSMUSG00000029471.13) 35172 ENSMUSG00000029471.13 ENSMUSG00000029471 ENSMUST00000199599 Camkk2 protein_coding Interval_36961 chr12 55631970 55633765 + 0 NA intron (ENSMUSG00000021027.17, intron 1 of 3) protein_coding-intron (ENSMUSG00000021027.17, intron 38 of 40) 33440 ENSMUSG00000045440.4 ENSMUSG00000045440 ENSMUST00000051857 Insm2 protein_coding Interval_71563 chr17 24575197 24575424 + 0 NA exon (ENSMUSG00000032855.6, exon 15 of 46) protein_coding-exon (ENSMUSG00000032855.6, exon 15 of 46) -12309 ENSMUSG00000032855.6 ENSMUSG00000032855 ENSMUST00000228581 Pkd1 protein_coding Interval_109677 chr3 145945871 145946150 + 0 NA Intergenic Intergenic 7725 ENSMUSG00000036873.13 ENSMUSG00000036873 ENSMUST00000188034 2410004B18Rik protein_coding Interval_149830 chr7 101858474 101859656 + 0 NA TTS (ENSMUSG00000001827.12) protein_coding-TTS (ENSMUSG00000001827.12) 6106 ENSMUSG00000110295.1 ENSMUSG00000110295 ENSMUST00000210220 Gm45319 processed_pseudogene Interval_130828 chr5 131038692 131038920 + 0 NA intron (ENSMUSG00000034040.16, intron 5 of 5) protein_coding-intron (ENSMUSG00000034040.16, intron 5 of 10) 4164 ENSMUSG00000106729.1 ENSMUSG00000106729 ENSMUST00000200842 Gm43165 TEC Interval_109040 chr3 135401940 135404075 + 0 NA Intergenic Intergenic 20072 ENSMUSG00000028165.9 ENSMUSG00000028165 ENSMUST00000198784 Cisd2 protein_coding Interval_27222 chr11 64283243 64284426 + 0 NA Intergenic Intergenic 119261 ENSMUSG00000087622.1 ENSMUSG00000087622 ENSMUST00000145095 Gm12290 lincRNA Interval_24400 chr11 32973179 32974012 + 0 NA Intergenic Intergenic 10704 ENSMUSG00000077836.2 ENSMUSG00000077836 ENSMUST00000104646 Gm26052 miRNA Interval_56084 chr14 105495926 105496186 + 0 NA Intergenic Intergenic -4880 ENSMUSG00000022116.7 ENSMUSG00000022116 ENSMUST00000188698 4930449E01Rik processed_transcript Interval_54375 chr14 68036522 68037613 + 0 NA Intergenic Intergenic 14263 ENSMUSG00000114621.1 ENSMUSG00000114621 ENSMUST00000223853 Gm31107 lincRNA Interval_5923 chr1 93245096 93245715 + 0 NA intron (ENSMUSG00000047793.13, intron 1 of 22) protein_coding-intron (ENSMUSG00000047793.13, intron 1 of 30) 9554 ENSMUSG00000047793.13 ENSMUSG00000047793 ENSMUST00000165883 Sned1 protein_coding Interval_39630 chr12 91672745 91673638 + 0 NA intron (ENSMUSG00000020961.15, intron 3 of 4) protein_coding-intron (ENSMUSG00000020961.15, intron 4 of 6) -11474 ENSMUSG00000086689.1 ENSMUSG00000086689 ENSMUST00000151945 Gm16876 antisense Interval_42169 chr13 9454527 9455027 + 0 NA intron (ENSMUSG00000048264.16, intron 1 of 36) protein_coding-intron (ENSMUSG00000048264.16, intron 1 of 38) 8877 ENSMUSG00000112948.1 ENSMUSG00000112948 ENSMUST00000223468 Gm48871 TEC Interval_170430 chr9 107917471 107918321 + 0 NA TTS (ENSMUSG00000032584.12) protein_coding-TTS (ENSMUSG00000032584.12) -10573 ENSMUSG00000066368.1 ENSMUSG00000066368 ENSMUST00000085073 Actl11 protein_coding Interval_80975 chr18 51908976 51909404 + 0 NA Intergenic Intergenic 18320 ENSMUSG00000118334.1 ENSMUSG00000118334 ENSMUST00000237836 Gm50446 lincRNA Interval_105275 chr3 84451244 84451541 + 0 NA exon (ENSMUSG00000041842.15, exon 10 of 12) protein_coding-exon (ENSMUSG00000041842.15, exon 10 of 12) 29001 ENSMUSG00000041842.15 ENSMUSG00000041842 ENSMUST00000131065 Fhdc1 protein_coding Interval_74518 chr17 52712344 52712595 + 0 NA intron (ENSMUSG00000035580.10, intron 1 of 15) protein_coding-intron (ENSMUSG00000035580.10, intron 1 of 15) -109809 ENSMUSG00000098552.1 ENSMUSG00000098552 ENSMUST00000183438 Gm27217 antisense Interval_41305 chr12 112605271 112606046 + 0 NA intron (ENSMUSG00000037679.9, intron 2 of 14) protein_coding-intron (ENSMUSG00000037679.9, intron 9 of 22) 1001 ENSMUSG00000037679.9 ENSMUSG00000037679 ENSMUST00000222275 Inf2 protein_coding Interval_87829 chr19 56325694 56326038 + 0 NA intron (ENSMUSG00000049134.15, intron 37 of 40) protein_coding-intron (ENSMUSG00000049134.15, intron 37 of 40) 37870 ENSMUSG00000025075.14 ENSMUSG00000025075 ENSMUST00000165522 Habp2 protein_coding Interval_143778 chr7 16248235 16249186 + 0 NA exon (ENSMUSG00000049130.6, exon 3 of 3) protein_coding-exon (ENSMUSG00000049130.6, exon 3 of 3) -6379 ENSMUSG00000074361.11 ENSMUSG00000074361 ENSMUST00000171425 C5ar2 protein_coding Interval_94898 chr2 101398791 101399064 + 0 NA Intergenic Intergenic -171697 ENSMUSG00000093614.1 ENSMUSG00000093614 ENSMUST00000177431 Gm20693 processed_pseudogene Interval_101944 chr3 12651965 12652346 + 0 NA Intergenic Intergenic 20895 ENSMUSG00000104177.1 ENSMUSG00000104177 ENSMUST00000194635 Gm2429 processed_pseudogene Interval_54398 chr14 68417103 68417468 + 0 NA Intergenic Intergenic -44346 ENSMUSG00000114396.1 ENSMUSG00000114396 ENSMUST00000225482 Gm31227 lincRNA Interval_113383 chr4 54006746 54006949 + 0 NA Intergenic Intergenic 2790 ENSMUSG00000089552.1 ENSMUSG00000089552 ENSMUST00000158927 Gm24177 snoRNA Interval_96148 chr2 120064805 120065209 + 0 NA intron (ENSMUSG00000074899.6, intron 27 of 65) protein_coding-intron (ENSMUSG00000074899.6, intron 27 of 65) 20671 ENSMUSG00000074899.6 ENSMUSG00000074899 ENSMUST00000156159 Sptbn5 protein_coding Interval_43344 chr13 29453972 29454801 + 0 NA intron (ENSMUSG00000006191.17, intron 2 of 2) protein_coding-intron (ENSMUSG00000006191.17, intron 12 of 15) 63068 ENSMUSG00000006191.17 ENSMUSG00000006191 ENSMUST00000129231 Cdkal1 protein_coding Interval_38288 chr12 76929861 76930820 + 0 NA Intergenic Intergenic 11453 ENSMUSG00000112008.1 ENSMUSG00000112008 ENSMUST00000218256 Gm47218 TEC Interval_168893 chr9 88430997 88431598 + 0 NA intron (ENSMUSG00000092541.7, intron 2 of 8) protein_coding-intron (ENSMUSG00000032422.18, intron 1 of 24) 7654 ENSMUSG00000032422.18 ENSMUSG00000032422 ENSMUST00000126563 Snx14 protein_coding Interval_11125 chr1 179525373 179525647 + 0 NA Intergenic Intergenic -4653 ENSMUSG00000096474.2 ENSMUSG00000096474 ENSMUST00000178932 Gm5561 processed_pseudogene Interval_100843 chr2 172843077 172843810 + 0 NA Intergenic Intergenic 20898 ENSMUSG00000093160.1 ENSMUSG00000093160 ENSMUST00000175419 Gm22773 miRNA Interval_96137 chr2 119971925 119973198 + 0 NA promoter-TSS (ENSMUSG00000033902.12) protein_coding-promoter-TSS (ENSMUSG00000033902.12) -342 ENSMUSG00000033902.12 ENSMUSG00000033902 ENSMUST00000148161 Mapkbp1 protein_coding Interval_60173 chr15 66968420 66970280 + 0 NA promoter-TSS (ENSMUSG00000091412.1) bidirectional_promoter_lncRNA-promoter-TSS (ENSMUSG00000091412.1) 27 ENSMUSG00000091412.1 ENSMUSG00000091412 ENSMUST00000171591 Gm2895 bidirectional_promoter_lncRNA Interval_40571 chr12 105797693 105798130 + 0 NA intron (ENSMUSG00000021111.15, intron 1 of 6) protein_coding-intron (ENSMUSG00000021111.15, intron 1 of 22) -31156 ENSMUSG00000021111.15 ENSMUSG00000021111 ENSMUST00000172089 Papola protein_coding Interval_112063 chr4 33903628 33904260 + 0 NA Intergenic Intergenic -20649 ENSMUSG00000044288.6 ENSMUSG00000044288 ENSMUST00000084736 Cnr1 protein_coding Interval_79759 chr18 34960966 34961220 + 0 NA Intergenic Intergenic 9642 ENSMUSG00000118145.1 ENSMUSG00000118145 ENSMUST00000237898 Gm6724 processed_pseudogene Interval_102729 chr3 30640356 30641208 + 0 NA intron (ENSMUSG00000027702.7, intron 5 of 10) protein_coding-intron (ENSMUSG00000027702.7, intron 5 of 10) -4548 ENSMUSG00000027703.16 ENSMUSG00000027703 ENSMUST00000108265 Lrriq4 protein_coding Interval_29586 chr11 85182510 85184897 + 0 NA Intergenic Intergenic 13299 ENSMUSG00000018479.12 ENSMUSG00000018479 ENSMUST00000018623 1700125H20Rik protein_coding Interval_15380 chr10 45237573 45238370 + 0 NA intron (ENSMUSG00000019848.14, intron 2 of 2) protein_coding-intron (ENSMUSG00000019848.14, intron 2 of 2) -9116 ENSMUSG00000098418.1 ENSMUSG00000098418 ENSMUST00000157398 Gm27723 snRNA Interval_24582 chr11 34791771 34792458 + 0 NA Intergenic Intergenic 31837 ENSMUSG00000069910.2 ENSMUSG00000069910 ENSMUST00000148387 Spdl1 protein_coding Interval_141635 chr6 131592223 131592825 + 0 NA Intergenic Intergenic 7414 ENSMUSG00000089792.3 ENSMUSG00000089792 ENSMUST00000159112 Gm16571 transcribed_unprocessed_pseudogene Interval_86158 chr19 37164210 37164431 + 0 NA intron (ENSMUSG00000039652.16, intron 2 of 10) protein_coding-intron (ENSMUSG00000039652.16, intron 2 of 10) -9523 ENSMUSG00000097591.1 ENSMUSG00000097591 ENSMUST00000180609 A330032B11Rik antisense Interval_2785 chr1 44958979 44959396 + 0 NA Intergenic Intergenic -34294 ENSMUSG00000101251.1 ENSMUSG00000101251 ENSMUST00000188283 Gm3496 processed_pseudogene Interval_145633 chr7 36591607 36591836 + 0 NA Intergenic Intergenic 22978 ENSMUSG00000101965.1 ENSMUSG00000101965 ENSMUST00000191121 Gm29129 lincRNA Interval_32614 chr11 109170684 109171082 + 0 NA Intergenic Intergenic -10689 ENSMUSG00000081524.3 ENSMUSG00000081524 ENSMUST00000120913 Gm11658 processed_pseudogene Interval_91950 chr2 51992675 51993258 + 0 NA Intergenic Intergenic -19472 ENSMUSG00000026946.9 ENSMUSG00000026946 ENSMUST00000123521 Nmi protein_coding Interval_78657 chr18 16490029 16491188 + 0 NA Intergenic Intergenic -215664 ENSMUSG00000063628.2 ENSMUSG00000063628 ENSMUST00000076710 Gm7665 processed_pseudogene Interval_138613 chr6 90437680 90439104 + 0 NA Intergenic Intergenic -9979 ENSMUSG00000048794.14 ENSMUSG00000048794 ENSMUST00000128124 Cfap100 protein_coding Interval_5419 chr1 88645675 88646274 + 0 NA Intergenic Intergenic -7111 ENSMUSG00000104057.1 ENSMUSG00000104057 ENSMUST00000194311 Gm38130 TEC Interval_33982 chr11 119813435 119814209 + 0 NA intron (ENSMUSG00000025583.15, intron 10 of 13) protein_coding-intron (ENSMUSG00000025583.15, intron 10 of 33) 20543 ENSMUSG00000085081.1 ENSMUSG00000085081 ENSMUST00000127450 Rptoros antisense Interval_82301 chr18 70471748 70473088 + 0 NA promoter-TSS (ENSMUSG00000044906.6) protein_coding-promoter-TSS (ENSMUSG00000044906.6) 86 ENSMUSG00000044906.6 ENSMUSG00000044906 ENSMUST00000237800 4930503L19Rik protein_coding Interval_167272 chr9 66945519 66946758 + 0 NA promoter-TSS (ENSMUSG00000036781.13) protein_coding-promoter-TSS (ENSMUSG00000036781.13) -28 ENSMUSG00000036781.13 ENSMUSG00000036781 ENSMUST00000123931 Rps27l protein_coding Interval_55680 chr14 98972146 98972683 + 0 NA Intergenic Intergenic 21904 ENSMUSG00000060377.4 ENSMUSG00000060377 ENSMUST00000081987 Rpl36a-ps1 protein_coding Interval_86439 chr19 40525087 40525895 + 0 NA Intergenic Intergenic 35567 ENSMUSG00000096592.1 ENSMUSG00000096592 ENSMUST00000120920 Gm15801 processed_pseudogene Interval_144989 chr7 29297000 29297320 + 0 NA Intergenic Intergenic 7852 ENSMUSG00000037166.5 ENSMUSG00000037166 ENSMUST00000048187 Ppp1r14a protein_coding Interval_9443 chr1 157156908 157157327 + 0 NA exon (ENSMUSG00000070565.11, exon 14 of 18) protein_coding-exon (ENSMUSG00000070565.11, exon 14 of 18) 38169 ENSMUSG00000109913.1 ENSMUSG00000109913 ENSMUST00000209278 Gm30694 unitary_pseudogene Interval_113360 chr4 53832174 53832624 + 0 NA intron (ENSMUSG00000028420.13, intron 3 of 3) protein_coding-intron (ENSMUSG00000028420.13, intron 1 of 5) 6342 ENSMUSG00000028420.13 ENSMUSG00000028420 ENSMUST00000144167 Tmem38b protein_coding Interval_8690 chr1 148416291 148416507 + 0 NA Intergenic Intergenic -82109 ENSMUSG00000101208.1 ENSMUSG00000101208 ENSMUST00000189771 Gm19891 processed_pseudogene Interval_133627 chr6 7752716 7753622 + 0 NA Intergenic Intergenic -13225 ENSMUSG00000107394.1 ENSMUSG00000107394 ENSMUST00000203458 1700012J15Rik lincRNA Interval_99239 chr2 158324595 158325254 + 0 NA TTS (ENSMUSG00000016024.9) protein_coding-TTS (ENSMUSG00000016024.9) 18431 ENSMUSG00000016024.9 ENSMUSG00000016024 ENSMUST00000129811 Lbp protein_coding Interval_60764 chr15 76612730 76613315 + 0 NA TTS (ENSMUSG00000063354.7) protein_coding-TTS (ENSMUSG00000063354.7) 4362 ENSMUSG00000063354.7 ENSMUSG00000063354 ENSMUST00000230317 Slc39a4 protein_coding Interval_11595 chr1 183094783 183096157 + 0 NA TTS (ENSMUSG00000030768.12) protein_coding-TTS (ENSMUSG00000030768.12) 20864 ENSMUSG00000094807.2 ENSMUSG00000094807 ENSMUST00000178492 Gm24975 miRNA Interval_87676 chr19 54257699 54257938 + 0 NA Intergenic Intergenic 59427 ENSMUSG00000118324.1 ENSMUSG00000118324 ENSMUST00000237525 Gm50187 TEC Interval_130478 chr5 128182485 128182730 + 0 NA intron (ENSMUSG00000034310.8, intron 2 of 8) protein_coding-intron (ENSMUSG00000034310.8, intron 2 of 8) 58732 ENSMUSG00000104581.1 ENSMUSG00000104581 ENSMUST00000197363 Gm42497 TEC Interval_106111 chr3 93288042 93289230 + 0 NA exon (ENSMUSG00000102439.4, exon 1 of 1) protein_coding-exon (ENSMUSG00000102439.4, exon 1 of 1) 10495 ENSMUSG00000081640.1 ENSMUSG00000081640 ENSMUST00000122125 Rplp0-ps1 processed_pseudogene Interval_123340 chr5 31572069 31572330 + 0 NA promoter-TSS (ENSMUSG00000107355.1) lincRNA-promoter-TSS (ENSMUSG00000107355.1) -802 ENSMUSG00000107355.1 ENSMUSG00000107355 ENSMUST00000200738 AI839979 lincRNA Interval_57157 chr15 7066552 7066773 + 0 NA Intergenic Intergenic -23952 ENSMUSG00000054263.12 ENSMUSG00000054263 ENSMUST00000171588 Lifr protein_coding Interval_15774 chr10 56391187 56391436 + 0 NA TTS (ENSMUSG00000050953.10) protein_coding-TTS (ENSMUSG00000050953.10) 13862 ENSMUSG00000050953.10 ENSMUSG00000050953 ENSMUST00000220069 Gja1 protein_coding Interval_101719 chr3 9130977 9132595 + 0 NA Intergenic Intergenic 59019 ENSMUSG00000103011.1 ENSMUSG00000103011 ENSMUST00000193160 Gm8860 processed_pseudogene Interval_11989 chr1 188544296 188544969 + 0 NA intron (ENSMUSG00000026609.15, intron 2 of 12) protein_coding-intron (ENSMUSG00000026609.15, intron 26 of 70) 78421 ENSMUSG00000077235.1 ENSMUSG00000077235 ENSMUST00000104047 Gm25095 snoRNA Interval_142343 chr6 140717440 140717657 + 0 NA Intergenic Intergenic -11736 ENSMUSG00000079264.1 ENSMUSG00000079264 ENSMUST00000111844 Gm11077 protein_coding Interval_110384 chr3 157593276 157593819 + 0 NA intron (ENSMUSG00000040016.16, intron 1 of 1) protein_coding-intron (ENSMUSG00000040016.16, intron 1 of 2) 26647 ENSMUSG00000040016.16 ENSMUSG00000040016 ENSMUST00000173533 Ptger3 protein_coding Interval_93286 chr2 71675980 71676187 + 0 NA Intergenic Intergenic -43334 ENSMUSG00000064263.6 ENSMUSG00000064263 ENSMUST00000079720 Platr26 lincRNA Interval_15421 chr10 45892273 45892528 + 0 NA Intergenic Intergenic 17095 ENSMUSG00000110841.1 ENSMUSG00000110841 ENSMUST00000217344 Gpx4-ps2 transcribed_processed_pseudogene Interval_81166 chr18 55492133 55492521 + 0 NA Intergenic Intergenic 24787 ENSMUSG00000103555.1 ENSMUSG00000103555 ENSMUST00000192601 Gm37337 TEC Interval_145407 chr7 34537045 34537617 + 0 NA Intergenic Intergenic -9875 ENSMUSG00000086631.2 ENSMUSG00000086631 ENSMUST00000206001 Gm12784 lincRNA Interval_99119 chr2 157328122 157328945 + 0 NA TTS (ENSMUSG00000027643.9) protein_coding-TTS (ENSMUSG00000027643.9) 18973 ENSMUSG00000027643.9 ENSMUSG00000027643 ENSMUST00000126630 Ghrh protein_coding Interval_111578 chr4 23710415 23711888 + 0 NA Intergenic Intergenic -50807 ENSMUSG00000084179.1 ENSMUSG00000084179 ENSMUST00000119585 Gm11890 processed_pseudogene Interval_12282 chr1 191386351 191387686 + 0 NA exon (ENSMUSG00000026626.11, exon 2 of 2) protein_coding-exon (ENSMUSG00000026626.11, exon 2 of 2) 12281 ENSMUSG00000026626.11 ENSMUSG00000026626 ENSMUST00000194832 Ppp2r5a protein_coding Interval_134192 chr6 22495772 22497107 + 0 NA Intergenic Intergenic -126479 ENSMUSG00000107282.1 ENSMUSG00000107282 ENSMUST00000201550 Gm43630 processed_pseudogene Interval_28518 chr11 76456093 76457119 + 0 NA exon (ENSMUSG00000017631.19, exon 6 of 18) protein_coding-exon (ENSMUSG00000017631.19, exon 6 of 18) 49401 ENSMUSG00000020843.15 ENSMUSG00000020843 ENSMUST00000164102 Timm22 protein_coding Interval_165277 chr9 45978411 45978628 + 0 NA TTS (ENSMUSG00000003131.7) protein_coding-TTS (ENSMUSG00000003131.7) 6264 ENSMUSG00000003131.7 ENSMUSG00000003131 ENSMUST00000214996 Pafah1b2 protein_coding Interval_163363 chr9 21086237 21086576 + 0 NA exon (ENSMUSG00000010205.11, exon 3 of 13) protein_coding-exon (ENSMUSG00000010205.11, exon 3 of 13) -5349 ENSMUSG00000086016.1 ENSMUSG00000086016 ENSMUST00000135674 1700084C06Rik antisense Interval_7643 chr1 132758529 132759609 + 0 NA Intergenic Intergenic 29714 ENSMUSG00000101126.1 ENSMUSG00000101126 ENSMUST00000189499 Gm10538 antisense Interval_87855 chr19 56591504 56592033 + 0 NA TTS (ENSMUSG00000025078.9) protein_coding-TTS (ENSMUSG00000025078.9) 20971 ENSMUSG00000025078.9 ENSMUSG00000025078 ENSMUST00000236979 Nhlrc2 protein_coding Interval_126151 chr5 79720130 79720551 + 0 NA Intergenic Intergenic 30189 ENSMUSG00000084435.1 ENSMUSG00000084435 ENSMUST00000122486 Gm23429 snRNA Interval_63226 chr15 99825298 99825500 + 0 NA intron (ENSMUSG00000023022.14, intron 3 of 3) protein_coding-intron (ENSMUSG00000023022.14, intron 3 of 10) 6379 ENSMUSG00000090500.1 ENSMUSG00000090500 ENSMUST00000169887 Gm17057 antisense Interval_102108 chr3 17735214 17736107 + 0 NA Intergenic Intergenic -54297 ENSMUSG00000100252.6 ENSMUSG00000100252 ENSMUST00000185804 Mir124-2hg lincRNA Interval_126702 chr5 92137430 92138556 + 0 NA promoter-TSS (ENSMUSG00000029407.10) protein_coding-promoter-TSS (ENSMUSG00000029407.10) 2936 ENSMUSG00000084111.4 ENSMUSG00000084111 ENSMUST00000121821 Gm15710 processed_pseudogene Interval_36866 chr12 54814823 54815675 + 0 NA Intergenic Intergenic -19562 ENSMUSG00000005656.9 ENSMUSG00000005656 ENSMUST00000219865 Snx6 protein_coding Interval_142523 chr6 143068293 143069115 + 0 NA intron (ENSMUSG00000030279.15, intron 8 of 27) protein_coding-intron (ENSMUSG00000030279.15, intron 8 of 24) 31386 ENSMUSG00000030279.15 ENSMUSG00000030279 ENSMUST00000205079 C2cd5 protein_coding Interval_137702 chr6 80544767 80545586 + 0 NA intron (ENSMUSG00000052581.13, intron 2 of 2) protein_coding-intron (ENSMUSG00000052581.13, intron 3 of 3) 30582 ENSMUSG00000107826.1 ENSMUSG00000107826 ENSMUST00000204212 Gm44242 TEC Interval_168705 chr9 86153134 86153425 + 0 NA Intergenic Intergenic 22736 ENSMUSG00000111418.1 ENSMUSG00000111418 ENSMUST00000216119 Gm18016 processed_pseudogene Interval_64132 chr16 8636887 8638231 + 0 NA promoter-TSS (ENSMUSG00000022711.16) protein_coding-promoter-TSS (ENSMUSG00000022711.16) 153 ENSMUSG00000043140.10 ENSMUSG00000043140 ENSMUST00000052505 Tmem186 protein_coding Interval_57550 chr15 12273669 12275786 + 0 NA TTS (ENSMUSG00000039458.15) protein_coding-TTS (ENSMUSG00000039458.15) -11942 ENSMUSG00000115594.1 ENSMUSG00000115594 ENSMUST00000227442 Gm46497 processed_pseudogene Interval_172008 chr9 123458501 123459358 + 0 NA intron (ENSMUSG00000035202.8, intron 19 of 20) protein_coding-intron (ENSMUSG00000035202.8, intron 19 of 20) -21681 ENSMUSG00000025239.3 ENSMUSG00000025239 ENSMUST00000214309 Limd1 protein_coding Interval_166622 chr9 61349590 61350353 + 0 NA Intergenic Intergenic 21656 ENSMUSG00000074256.3 ENSMUSG00000074256 ENSMUST00000187131 Gm10655 lincRNA Interval_136461 chr6 54681083 54682522 + 0 NA promoter-TSS (ENSMUSG00000038065.13) protein_coding-promoter-TSS (ENSMUSG00000038065.13) 115 ENSMUSG00000101651.1 ENSMUSG00000101651 ENSMUST00000188574 Gm28402 antisense Interval_68145 chr16 65664790 65665606 + 0 NA Intergenic Intergenic -51779 ENSMUSG00000116578.1 ENSMUSG00000116578 ENSMUST00000232570 Gm49633 processed_pseudogene Interval_52448 chr14 46509797 46510072 + 0 NA intron (ENSMUSG00000115158.1, intron 2 of 2) lincRNA-intron (ENSMUSG00000115158.1, intron 2 of 2) 6508 ENSMUSG00000115158.1 ENSMUSG00000115158 ENSMUST00000227980 Gm48912 lincRNA Interval_148015 chr7 78106451 78106673 + 0 NA Intergenic Intergenic -79922 ENSMUSG00000104817.1 ENSMUSG00000104817 ENSMUST00000196301 Gm44358 miRNA Interval_167830 chr9 72931076 72931357 + 0 NA intron (ENSMUSG00000034910.5, intron 1 of 2) protein_coding-intron (ENSMUSG00000034910.5, intron 1 of 2) 5571 ENSMUSG00000034910.5 ENSMUSG00000034910 ENSMUST00000038489 Pygo1 protein_coding Interval_136678 chr6 57538676 57539156 + 0 NA intron (ENSMUSG00000108112.1, intron 3 of 13) processed_transcript-intron (ENSMUSG00000108112.1, intron 3 of 13) -23309 ENSMUSG00000037826.5 ENSMUSG00000037826 ENSMUST00000203713 Ppm1k protein_coding Interval_120403 chr4 148388968 148389257 + 0 NA Intergenic Intergenic -29652 ENSMUSG00000086326.1 ENSMUSG00000086326 ENSMUST00000138802 Gm13200 lincRNA Interval_7356 chr1 130397404 130397644 + 0 NA intron (ENSMUSG00000026401.15, intron 7 of 7) protein_coding-intron (ENSMUSG00000026401.15, intron 9 of 9) 25216 ENSMUSG00000026401.15 ENSMUSG00000026401 ENSMUST00000136497 Cd55b protein_coding Interval_14776 chr10 39768275 39768687 + 0 NA intron (ENSMUSG00000019841.15, intron 2 of 32) protein_coding-intron (ENSMUSG00000019841.15, intron 1 of 31) -15613 ENSMUSG00000081608.1 ENSMUSG00000081608 ENSMUST00000122161 Gm16210 processed_pseudogene Interval_31398 chr11 100440285 100441530 + 0 NA promoter-TSS (ENSMUSG00000017176.17) protein_coding-promoter-TSS (ENSMUSG00000017176.17) 22 ENSMUSG00000017176.17 ENSMUSG00000017176 ENSMUST00000130666 Nt5c3b protein_coding Interval_61616 chr15 82969812 82970236 + 0 NA intron (ENSMUSG00000041852.15, intron 1 of 1) protein_coding-intron (ENSMUSG00000041852.15, intron 1 of 1) -10728 ENSMUSG00000092751.1 ENSMUSG00000092751 ENSMUST00000175010 Mir3080 miRNA Interval_93760 chr2 76672798 76673847 + 0 NA promoter-TSS (ENSMUSG00000002732.14) protein_coding-promoter-TSS (ENSMUSG00000002732.14) -206 ENSMUSG00000002732.14 ENSMUSG00000002732 ENSMUST00000147355 Fkbp7 protein_coding Interval_135418 chr6 39256138 39257821 + 0 NA Intergenic Intergenic 8963 ENSMUSG00000089422.1 ENSMUSG00000089422 ENSMUST00000158797 Gm26008 snRNA Interval_165865 chr9 53947296 53947890 + 0 NA intron (ENSMUSG00000041986.16, intron 1 of 8) protein_coding-intron (ENSMUSG00000041986.16, intron 1 of 10) -20567 ENSMUSG00000041986.16 ENSMUSG00000041986 ENSMUST00000213111 Elmod1 protein_coding Interval_49602 chr13 113414243 113414762 + 0 NA Intergenic Intergenic 9385 ENSMUSG00000114864.1 ENSMUSG00000114864 ENSMUST00000226016 Gm41071 lincRNA Interval_65137 chr16 20107129 20107444 + 0 NA TTS (ENSMUSG00000062901.3) protein_coding-TTS (ENSMUSG00000062901.3) 9701 ENSMUSG00000062901.3 ENSMUSG00000062901 ENSMUST00000231842 Klhl24 protein_coding Interval_34217 chr11 121353730 121355254 + 0 NA promoter-TSS (ENSMUSG00000025173.13) protein_coding-promoter-TSS (ENSMUSG00000025173.13) -13304 ENSMUSG00000025173.13 ENSMUSG00000025173 ENSMUST00000127373 Wdr45b protein_coding Interval_77239 chr17 87523668 87523928 + 0 NA Intergenic Intergenic 6946 ENSMUSG00000117361.1 ENSMUSG00000117361 ENSMUST00000234692 Gm30984 lincRNA Interval_121003 chr4 152153663 152154212 + 0 NA Intergenic Intergenic -1715 ENSMUSG00000028943.18 ENSMUSG00000028943 ENSMUST00000148075 Espn protein_coding Interval_173366 chrX 85079356 85080196 + 0 NA intron (ENSMUSG00000045103.19, intron 35 of 50) protein_coding-intron (ENSMUSG00000045103.19, intron 2 of 17) 156790 ENSMUSG00000081379.1 ENSMUSG00000081379 ENSMUST00000118249 Gm14771 processed_pseudogene Interval_140622 chr6 120153931 120154140 + 0 NA intron (ENSMUSG00000041377.12, intron 1 of 3) protein_coding-intron (ENSMUSG00000041377.12, intron 1 of 3) -10285 ENSMUSG00000095086.1 ENSMUSG00000095086 ENSMUST00000180263 Gm25327 snRNA Interval_130608 chr5 129170057 129170254 + 0 NA intron (ENSMUSG00000044017.16, intron 14 of 24) protein_coding-intron (ENSMUSG00000044017.16, intron 15 of 25) -41638 ENSMUSG00000060419.8 ENSMUSG00000060419 ENSMUST00000140155 Rps16-ps2 processed_pseudogene Interval_41253 chr12 112169348 112169623 + 0 NA intron (ENSMUSG00000021294.7, intron 5 of 15) protein_coding-intron (ENSMUSG00000021294.7, intron 5 of 15) -9669 ENSMUSG00000021294.7 ENSMUSG00000021294 ENSMUST00000183816 Kif26a protein_coding Interval_95192 chr2 104668048 104670801 + 0 NA intron (ENSMUSG00000027175.10, intron 1 of 1) protein_coding-intron (ENSMUSG00000027175.10, intron 1 of 1) 37043 ENSMUSG00000027175.10 ENSMUSG00000027175 ENSMUST00000132600 Tcp11l1 protein_coding Interval_32805 chr11 110849792 110850009 + 0 NA Intergenic Intergenic -118133 ENSMUSG00000051497.15 ENSMUSG00000051497 ENSMUST00000178798 Kcnj16 protein_coding Interval_22493 chr11 11088087 11088553 + 0 NA Intergenic Intergenic -28165 ENSMUSG00000050830.17 ENSMUSG00000050830 ENSMUST00000154155 Vwc2 protein_coding Interval_148346 chr7 80654344 80656081 + 0 NA intron (ENSMUSG00000030527.15, intron 2 of 14) protein_coding-intron (ENSMUSG00000030527.15, intron 2 of 14) 19195 ENSMUSG00000084821.1 ENSMUSG00000084821 ENSMUST00000142678 Gm15880 antisense Interval_76086 chr17 74819608 74820497 + 0 NA promoter-TSS (ENSMUSG00000117444.1) antisense-promoter-TSS (ENSMUSG00000117444.1) -141 ENSMUSG00000117444.1 ENSMUSG00000117444 ENSMUST00000234963 Gm50020 antisense Interval_49165 chr13 108971519 108972101 + 0 NA intron (ENSMUSG00000021699.17, intron 1 of 15) protein_coding-intron (ENSMUSG00000021699.17, intron 2 of 16) 111644 ENSMUSG00000021699.17 ENSMUSG00000021699 ENSMUST00000155459 Pde4d protein_coding Interval_174474 chrX 153118497 153119515 + 0 NA intron (ENSMUSG00000071665.10, intron 1 of 3) protein_coding-intron (ENSMUSG00000071665.10, intron 1 of 3) 4953 ENSMUSG00000098118.1 ENSMUSG00000098118 ENSMUST00000182263 Gm26960 unprocessed_pseudogene Interval_98546 chr2 153139341 153140654 + 0 NA intron (ENSMUSG00000003283.15, intron 10 of 12) protein_coding-intron (ENSMUSG00000003283.15, intron 10 of 12) -15016 ENSMUSG00000089499.1 ENSMUSG00000089499 ENSMUST00000158874 Gm25643 snRNA Interval_153547 chr8 3355390 3356019 + 0 NA TTS (ENSMUSG00000004568.13) protein_coding-TTS (ENSMUSG00000004568.13) 2267 ENSMUSG00000004568.13 ENSMUSG00000004568 ENSMUST00000145360 Arhgef18 protein_coding Interval_74956 chr17 58020085 58020272 + 0 NA intron (ENSMUSG00000038048.8, intron 4 of 23) protein_coding-intron (ENSMUSG00000038048.8, intron 4 of 23) -180957 ENSMUSG00000071052.4 ENSMUSG00000071052 ENSMUST00000095218 Rpl7a-ps5 processed_pseudogene Interval_160422 chr8 109394927 109395388 + 0 NA Intergenic Intergenic 30587 ENSMUSG00000092821.1 ENSMUSG00000092821 ENSMUST00000175080 Gm23163 miRNA Interval_79957 chr18 36264401 36264845 + 0 NA Intergenic Intergenic -16474 ENSMUSG00000043991.5 ENSMUSG00000043991 ENSMUST00000051301 Pura protein_coding Interval_156211 chr8 46091445 46092059 + 0 NA intron (ENSMUSG00000038291.16, intron 3 of 16) protein_coding-intron (ENSMUSG00000038291.16, intron 5 of 18) -11468 ENSMUSG00000038291.16 ENSMUSG00000038291 ENSMUST00000150645 Snx25 protein_coding Interval_108954 chr3 133571162 133572539 + 0 NA intron (ENSMUSG00000105085.1, intron 1 of 2) antisense-intron (ENSMUSG00000105085.1, intron 1 of 2) 8051 ENSMUSG00000105595.1 ENSMUSG00000105595 ENSMUST00000197855 Gm49316 processed_pseudogene Interval_112088 chr4 34579224 34579606 + 0 NA intron (ENSMUSG00000040044.11, intron 14 of 19) protein_coding-intron (ENSMUSG00000040044.11, intron 14 of 19) 28464 ENSMUSG00000028291.7 ENSMUSG00000028291 ENSMUST00000132230 Akirin2 protein_coding Interval_41412 chr12 113555240 113555450 + 0 NA Intergenic Intergenic 11437 ENSMUSG00000043945.4 ENSMUSG00000043945 ENSMUST00000053086 Adam6a protein_coding Interval_37664 chr12 70954976 70955237 + 0 NA exon (ENSMUSG00000021076.6, exon 7 of 7) protein_coding-exon (ENSMUSG00000021076.6, exon 7 of 7) 15164 ENSMUSG00000021076.6 ENSMUSG00000021076 ENSMUST00000220452 Actr10 protein_coding Interval_168841 chr9 87945122 87945372 + 0 NA Intergenic Intergenic -56660 ENSMUSG00000093937.1 ENSMUSG00000093937 ENSMUST00000180264 Gm25528 snoRNA Interval_16325 chr10 62241967 62243425 + 0 NA Intergenic Intergenic -9742 ENSMUSG00000020081.5 ENSMUSG00000020081 ENSMUST00000020278 Tacr2 protein_coding Interval_8300 chr1 137002627 137004095 + 0 NA Intergenic Intergenic -13091 ENSMUSG00000088970.1 ENSMUSG00000088970 ENSMUST00000158345 Gm23763 snRNA Interval_4473 chr1 74418676 74419341 + 0 NA promoter-TSS (ENSMUSG00000026175.12) protein_coding-promoter-TSS (ENSMUSG00000026175.12) -4678 ENSMUSG00000026175.12 ENSMUSG00000026175 ENSMUST00000163018 Vil1 protein_coding Interval_3317 chr1 56838730 56839073 + 0 NA intron (ENSMUSG00000038331.15, intron 5 of 6) protein_coding-intron (ENSMUSG00000038331.15, intron 8 of 9) 130971 ENSMUSG00000038331.15 ENSMUSG00000038331 ENSMUST00000177282 Satb2 protein_coding Interval_57057 chr15 5184579 5186413 + 0 NA promoter-TSS (ENSMUSG00000022151.16) protein_coding-promoter-TSS (ENSMUSG00000022151.16) 227 ENSMUSG00000087532.1 ENSMUSG00000087532 ENSMUST00000150079 Gm15938 antisense Interval_79073 chr18 24335750 24336416 + 0 NA Intergenic Intergenic -3283 ENSMUSG00000117570.1 ENSMUSG00000117570 ENSMUST00000234938 Gm38410 lincRNA Interval_48870 chr13 104183450 104184268 + 0 NA intron (ENSMUSG00000021712.15, intron 2 of 9) protein_coding-intron (ENSMUSG00000021712.15, intron 2 of 10) 5020 ENSMUSG00000021712.15 ENSMUSG00000021712 ENSMUST00000069174 Trim23 protein_coding Interval_46791 chr13 70582525 70582753 + 0 NA intron (ENSMUSG00000034525.7, intron 4 of 5) protein_coding-intron (ENSMUSG00000034525.7, intron 4 of 5) 9359 ENSMUSG00000101051.6 ENSMUSG00000101051 ENSMUST00000189028 1700100L14Rik antisense Interval_124037 chr5 37705184 37705452 + 0 NA intron (ENSMUSG00000029123.8, intron 1 of 11) protein_coding-intron (ENSMUSG00000029123.8, intron 1 of 11) 11853 ENSMUSG00000029123.8 ENSMUSG00000029123 ENSMUST00000094836 Stk32b protein_coding Interval_158080 chr8 78595595 78595827 + 0 NA intron (ENSMUSG00000031684.11, intron 1 of 2) protein_coding-intron (ENSMUSG00000031684.11, intron 5 of 11) -8583 ENSMUSG00000110244.1 ENSMUSG00000110244 ENSMUST00000211775 Gm2253 processed_pseudogene Interval_48918 chr13 104822302 104823020 + 0 NA intron (ENSMUSG00000021716.14, intron 1 of 4) protein_coding-intron (ENSMUSG00000021716.14, intron 1 of 4) 5422 ENSMUSG00000021716.14 ENSMUSG00000021716 ENSMUST00000147061 Srek1ip1 protein_coding Interval_73041 chr17 34313564 34314471 + 0 NA intron (ENSMUSG00000060586.11, intron 2 of 5) protein_coding-intron (ENSMUSG00000060586.11, intron 2 of 5) -5947 ENSMUSG00000092415.2 ENSMUSG00000092415 ENSMUST00000236664 Gm20513 antisense Interval_165343 chr9 46433814 46435068 + 0 NA Intergenic Intergenic 37079 ENSMUSG00000110802.1 ENSMUSG00000110802 ENSMUST00000213920 Gm47141 lincRNA Interval_35663 chr12 27088796 27089394 + 0 NA intron (ENSMUSG00000094002.3, intron 2 of 4) lincRNA-intron (ENSMUSG00000094002.3, intron 3 of 3) 71408 ENSMUSG00000094002.3 ENSMUSG00000094002 ENSMUST00000183238 Gm9866 lincRNA Interval_68547 chr16 78554566 78555229 + 0 NA intron (ENSMUSG00000022864.14, intron 2 of 3) protein_coding-intron (ENSMUSG00000022864.14, intron 2 of 4) -5419 ENSMUSG00000116628.1 ENSMUSG00000116628 ENSMUST00000231846 4930478L05Rik antisense Interval_98250 chr2 150466847 150468527 + 0 NA Intergenic Intergenic 2478 ENSMUSG00000082740.1 ENSMUSG00000082740 ENSMUST00000117906 Gm14127 processed_pseudogene Interval_64123 chr16 8560339 8560613 + 0 NA intron (ENSMUSG00000057880.12, intron 1 of 2) protein_coding-intron (ENSMUSG00000057880.12, intron 1 of 15) -23151 ENSMUSG00000057880.12 ENSMUSG00000057880 ENSMUST00000128459 Abat protein_coding Interval_81308 chr18 57806465 57807174 + 0 NA Intergenic Intergenic -14459 ENSMUSG00000118391.1 ENSMUSG00000118391 ENSMUST00000236807 Gm19519 antisense Interval_39410 chr12 87250298 87250604 + 0 NA intron (ENSMUSG00000021038.17, intron 11 of 11) protein_coding-intron (ENSMUSG00000021038.17, intron 10 of 18) -11719 ENSMUSG00000072919.4 ENSMUSG00000072919 ENSMUST00000221768 Noxred1 protein_coding Interval_104645 chr3 69063940 69064125 + 0 NA Intergenic Intergenic -19309 ENSMUSG00000034317.14 ENSMUSG00000034317 ENSMUST00000153259 Trim59 protein_coding Interval_85511 chr19 27724004 27725818 + 0 NA Intergenic Intergenic -20904 ENSMUSG00000088266.1 ENSMUSG00000088266 ENSMUST00000157641 Gm24782 snoRNA Interval_70494 chr17 10888108 10888346 + 0 NA intron (ENSMUSG00000023826.16, intron 1 of 10) protein_coding-intron (ENSMUSG00000023826.16, intron 1 of 6) -10768 ENSMUSG00000099797.1 ENSMUSG00000099797 ENSMUST00000188584 Gm3145 processed_pseudogene Interval_97762 chr2 143914746 143916003 + 0 NA promoter-TSS (ENSMUSG00000015932.8) protein_coding-promoter-TSS (ENSMUSG00000015932.8) 54 ENSMUSG00000015932.8 ENSMUSG00000015932 ENSMUST00000103172 Dstn protein_coding Interval_78352 chr18 12113450 12113775 + 0 NA promoter-TSS (ENSMUSG00000049411.15) protein_coding-promoter-TSS (ENSMUSG00000049411.15) 7868 ENSMUSG00000049411.15 ENSMUSG00000049411 ENSMUST00000234833 Tmem241 protein_coding Interval_109603 chr3 145017954 145018332 + 0 NA intron (ENSMUSG00000028255.6, intron 1 of 3) protein_coding-intron (ENSMUSG00000028255.6, intron 5 of 13) 772 ENSMUSG00000028255.6 ENSMUSG00000028255 ENSMUST00000198832 Clca1 protein_coding Interval_140114 chr6 114345319 114345708 + 0 NA Intergenic Intergenic -58153 ENSMUSG00000053004.9 ENSMUSG00000053004 ENSMUST00000160780 Hrh1 protein_coding Interval_52334 chr14 45185469 45185906 + 0 NA intron (ENSMUSG00000021830.14, intron 6 of 8) protein_coding-intron (ENSMUSG00000021830.14, intron 6 of 20) -2576 ENSMUSG00000021830.14 ENSMUSG00000021830 ENSMUST00000123118 Txndc16 protein_coding Interval_27422 chr11 67530296 67530589 + 0 NA intron (ENSMUSG00000033066.16, intron 1 of 6) protein_coding-intron (ENSMUSG00000033066.16, intron 1 of 13) 47024 ENSMUSG00000087058.1 ENSMUSG00000087058 ENSMUST00000152963 Gm12301 antisense Interval_141474 chr6 128474041 128474294 + 0 NA promoter-TSS (ENSMUSG00000107896.1) processed_pseudogene-promoter-TSS (ENSMUSG00000107896.1) -779 ENSMUSG00000107896.1 ENSMUSG00000107896 ENSMUST00000203602 Gm8719 processed_pseudogene Interval_115147 chr4 91483987 91484184 + 0 NA Intergenic Intergenic -110722 ENSMUSG00000098563.1 ENSMUSG00000098563 ENSMUST00000183406 Mir6402 miRNA Interval_104039 chr3 57611517 57612073 + 0 NA TTS (ENSMUSG00000097339.5) lincRNA-TTS (ENSMUSG00000097339.5) -4814 ENSMUSG00000098401.1 ENSMUSG00000098401 ENSMUST00000183760 Mir6377 miRNA Interval_105633 chr3 88247433 88248688 + 0 NA intron (ENSMUSG00000104445.1, intron 2 of 9) protein_coding-intron (ENSMUSG00000103766.5, intron 3 of 7) 6649 ENSMUSG00000104445.1 ENSMUSG00000104445 ENSMUST00000171887 Rhbg protein_coding Interval_114514 chr4 81809098 81809879 + 0 NA Intergenic Intergenic 66342 ENSMUSG00000087540.1 ENSMUSG00000087540 ENSMUST00000144875 Gm11412 lincRNA Interval_58527 chr15 35634854 35635782 + 0 NA intron (ENSMUSG00000037646.10, intron 25 of 28) protein_coding-intron (ENSMUSG00000037646.10, intron 25 of 61) 25600 ENSMUSG00000076333.1 ENSMUSG00000076333 ENSMUST00000102378 Mir599 miRNA Interval_127687 chr5 106659875 106660205 + 0 NA intron (ENSMUSG00000049606.16, intron 1 of 1) protein_coding-intron (ENSMUSG00000049606.16, intron 2 of 6) -4327 ENSMUSG00000104706.1 ENSMUSG00000104706 ENSMUST00000200044 Gm43421 TEC Interval_38064 chr12 75449477 75450759 + 0 NA TTS (ENSMUSG00000021051.10) protein_coding-TTS (ENSMUSG00000021051.10) -33337 ENSMUSG00000048982.3 ENSMUSG00000048982 ENSMUST00000051079 Gphb5 protein_coding Interval_72620 chr17 31107952 31108259 + 0 NA intron (ENSMUSG00000024030.7, intron 8 of 14) protein_coding-intron (ENSMUSG00000024030.7, intron 8 of 14) 21541 ENSMUSG00000024029.4 ENSMUSG00000024029 ENSMUST00000024827 Tff3 protein_coding Interval_38114 chr12 75719007 75719266 + 0 NA intron (ENSMUSG00000021054.6, intron 2 of 2) protein_coding-intron (ENSMUSG00000021054.6, intron 2 of 2) 16560 ENSMUSG00000021054.6 ENSMUSG00000021054 ENSMUST00000220285 Sgpp1 protein_coding Interval_150894 chr7 116211816 116212273 + 0 NA intron (ENSMUSG00000045659.18, intron 3 of 18) protein_coding-intron (ENSMUSG00000045659.18, intron 3 of 26) 70699 ENSMUSG00000108650.1 ENSMUSG00000108650 ENSMUST00000205675 Gm44867 sense_intronic Interval_62339 chr15 90491180 90491757 + 0 NA intron (ENSMUSG00000052560.15, intron 18 of 18) protein_coding-intron (ENSMUSG00000052560.15, intron 19 of 19) -69879 ENSMUSG00000078847.1 ENSMUSG00000078847 ENSMUST00000108774 Gm6746 processed_pseudogene Interval_51024 chr14 21644390 21645631 + 0 NA intron (ENSMUSG00000021767.19, intron 11 of 15) protein_coding-intron (ENSMUSG00000021767.19, intron 12 of 16) 58092 ENSMUSG00000063821.6 ENSMUSG00000063821 ENSMUST00000224735 Dupd1 protein_coding Interval_3169 chr1 54386713 54387818 + 0 NA Intergenic Intergenic 36789 ENSMUSG00000041303.7 ENSMUSG00000041303 ENSMUST00000189906 Gtf3c3 protein_coding Interval_49494 chr13 112426192 112426387 + 0 NA promoter-TSS (ENSMUSG00000114869.1) lincRNA-promoter-TSS (ENSMUSG00000114869.1) 51 ENSMUSG00000114869.1 ENSMUSG00000114869 ENSMUST00000224307 Gm48876 lincRNA Interval_107100 chr3 103538098 103538655 + 0 NA Intergenic Intergenic -37002 ENSMUSG00000027849.19 ENSMUSG00000027849 ENSMUST00000118563 Syt6 protein_coding Interval_33538 chr11 117100693 117100964 + 0 NA Intergenic Intergenic -3801 ENSMUSG00000087057.7 ENSMUSG00000087057 ENSMUST00000147186 Gm11730 antisense Interval_46844 chr13 72291935 72292808 + 0 NA Intergenic Intergenic -57850 ENSMUSG00000113594.1 ENSMUSG00000113594 ENSMUST00000220890 Gm4052 processed_pseudogene Interval_38254 chr12 76674881 76675073 + 0 NA intron (ENSMUSG00000021061.15, intron 1 of 31) protein_coding-intron (ENSMUSG00000021061.15, intron 1 of 35) -17003 ENSMUSG00000088356.1 ENSMUSG00000088356 ENSMUST00000157731 Gm24010 misc_RNA Interval_125433 chr5 67082647 67083916 + 0 NA Intergenic Intergenic 15776 ENSMUSG00000012520.10 ENSMUSG00000012520 ENSMUST00000174251 Phox2b protein_coding Interval_135569 chr6 40526098 40526308 + 0 NA Intergenic Intergenic -2988 ENSMUSG00000107359.1 ENSMUSG00000107359 ENSMUST00000201439 Gm43295 processed_pseudogene Interval_153803 chr8 8733717 8734554 + 0 NA intron (ENSMUSG00000109371.1, intron 2 of 4) lincRNA-intron (ENSMUSG00000109371.1, intron 2 of 4) -1835 ENSMUSG00000109062.1 ENSMUSG00000109062 ENSMUST00000209128 Gm44622 lincRNA Interval_99169 chr2 157707599 157708434 + 0 NA Intergenic Intergenic 5785 ENSMUSG00000077290.1 ENSMUSG00000077290 ENSMUST00000104102 Gm25407 snoRNA Interval_134018 chr6 17734088 17734303 + 0 NA intron (ENSMUSG00000029534.17, intron 1 of 7) protein_coding-intron (ENSMUSG00000029534.17, intron 1 of 14) 14705 ENSMUSG00000106801.1 ENSMUSG00000106801 ENSMUST00000202649 Gm42852 TEC Interval_103152 chr3 35994528 35995342 + 0 NA intron (ENSMUSG00000027709.9, intron 1 of 5) protein_coding-intron (ENSMUSG00000027709.9, intron 3 of 18) -4978 ENSMUSG00000086392.9 ENSMUSG00000086392 ENSMUST00000124469 Mccc1os antisense Interval_154050 chr8 12263017 12263521 + 0 NA Intergenic Intergenic -15550 ENSMUSG00000074473.1 ENSMUSG00000074473 ENSMUST00000098935 A230072I06Rik protein_coding Interval_37897 chr12 72853879 72855752 + 0 NA Intergenic Intergenic 37103 ENSMUSG00000113779.1 ENSMUSG00000113779 ENSMUST00000222961 Gm33785 lincRNA Interval_7398 chr1 130990945 130991179 + 0 NA Intergenic Intergenic -28783 ENSMUSG00000016529.5 ENSMUSG00000016529 ENSMUST00000016673 Il10 protein_coding Interval_20291 chr10 116695215 116695888 + 0 NA Intergenic Intergenic 20960 ENSMUSG00000097104.1 ENSMUSG00000097104 ENSMUST00000181656 Gm26579 lincRNA Interval_64937 chr16 17372230 17372473 + 0 NA intron (ENSMUSG00000041720.14, intron 7 of 54) protein_coding-intron (ENSMUSG00000041720.14, intron 7 of 54) -30339 ENSMUSG00000065331.1 ENSMUSG00000065331 ENSMUST00000083397 Gm24927 snRNA Interval_42492 chr13 14070097 14070277 + 0 NA intron (ENSMUSG00000039219.18, intron 1 of 8) protein_coding-intron (ENSMUSG00000039219.18, intron 2 of 22) 5364 ENSMUSG00000039219.18 ENSMUSG00000039219 ENSMUST00000151151 Arid4b protein_coding Interval_109219 chr3 137974912 137976192 + 0 NA intron (ENSMUSG00000028159.14, intron 1 of 8) protein_coding-intron (ENSMUSG00000028159.14, intron 1 of 8) -20839 ENSMUSG00000028159.14 ENSMUSG00000028159 ENSMUST00000199541 Dapp1 protein_coding Interval_134637 chr6 30088589 30088996 + 0 NA intron (ENSMUSG00000058440.14, intron 1 of 12) protein_coding-intron (ENSMUSG00000058440.14, intron 1 of 12) -1103 ENSMUSG00000058440.14 ENSMUSG00000058440 ENSMUST00000132866 Nrf1 protein_coding Interval_96242 chr2 120889269 120889556 + 0 NA intron (ENSMUSG00000027272.5, intron 1 of 5) protein_coding-intron (ENSMUSG00000027272.5, intron 37 of 46) 23084 ENSMUSG00000087519.8 ENSMUSG00000087519 ENSMUST00000171483 AV039307 processed_transcript Interval_38189 chr12 76268408 76268667 + 0 NA intron (ENSMUSG00000021048.7, intron 1 of 26) protein_coding-intron (ENSMUSG00000021048.7, intron 1 of 27) 9179 ENSMUSG00000112138.1 ENSMUSG00000112138 ENSMUST00000218456 Gm47526 processed_pseudogene Interval_118171 chr4 129345989 129346202 + 0 NA intron (ENSMUSG00000057572.15, intron 6 of 7) protein_coding-intron (ENSMUSG00000057572.15, intron 5 of 5) 10400 ENSMUSG00000057572.15 ENSMUSG00000057572 ENSMUST00000140272 Zbtb8os protein_coding Interval_136486 chr6 54876130 54877796 + 0 NA intron (ENSMUSG00000058446.14, intron 3 of 3) protein_coding-intron (ENSMUSG00000058446.14, intron 2 of 4) -25459 ENSMUSG00000107841.1 ENSMUSG00000107841 ENSMUST00000204539 Gm44185 TEC Interval_121851 chr5 8834506 8834777 + 0 NA intron (ENSMUSG00000028970.9, intron 18 of 21) protein_coding-intron (ENSMUSG00000028970.9, intron 19 of 27) 3494 ENSMUSG00000105870.1 ENSMUSG00000105870 ENSMUST00000197499 7330423F06Rik TEC Interval_141866 chr6 134996432 134997409 + 0 NA Intergenic Intergenic -14704 ENSMUSG00000030204.10 ENSMUSG00000030204 ENSMUST00000155022 Ddx47 protein_coding Interval_106446 chr3 96404328 96406010 + 0 NA Intergenic Intergenic 2788 ENSMUSG00000097299.1 ENSMUSG00000097299 ENSMUST00000180455 Gm26654 lincRNA Interval_65205 chr16 20511390 20511671 + 0 NA exon (ENSMUSG00000086837.1, exon 3 of 3) antisense-exon (ENSMUSG00000086837.1, exon 3 of 3) -5576 ENSMUSG00000003233.12 ENSMUSG00000003233 ENSMUST00000169552 Dvl3 protein_coding Interval_124283 chr5 43554555 43555820 + 0 NA intron (ENSMUSG00000087290.2, intron 1 of 1) protein_coding-intron (ENSMUSG00000061535.11, intron 1 of 2) -20634 ENSMUSG00000104912.1 ENSMUSG00000104912 ENSMUST00000197583 Gm43023 TEC Interval_58361 chr15 33546980 33547261 + 0 NA intron (ENSMUSG00000039007.10, intron 8 of 8) protein_coding-intron (ENSMUSG00000039007.10, intron 7 of 7) 42616 ENSMUSG00000088062.1 ENSMUSG00000088062 ENSMUST00000157437 Gm24476 rRNA Interval_15635 chr10 52512472 52512727 + 0 NA Intergenic Intergenic 2178 ENSMUSG00000112464.1 ENSMUSG00000112464 ENSMUST00000217713 Gm47609 processed_pseudogene Interval_23659 chr11 24171991 24172842 + 0 NA intron (ENSMUSG00000085516.1, intron 1 of 2) protein_coding-intron (ENSMUSG00000000861.15, intron 4 of 4) 365 ENSMUSG00000085516.1 ENSMUSG00000085516 ENSMUST00000146717 4930538E20Rik antisense Interval_16840 chr10 69101770 69102565 + 0 NA Intergenic Intergenic -4301 ENSMUSG00000112083.1 ENSMUSG00000112083 ENSMUST00000218524 Gm47107 lincRNA Interval_48721 chr13 102116961 102117683 + 0 NA Intergenic Intergenic -1287 ENSMUSG00000102542.1 ENSMUSG00000102542 ENSMUST00000195109 Gm38133 TEC Interval_69841 chr16 97400214 97400543 + 0 NA intron (ENSMUSG00000040605.7, intron 2 of 8) protein_coding-intron (ENSMUSG00000040605.7, intron 2 of 8) -4891 ENSMUSG00000116686.1 ENSMUSG00000116686 ENSMUST00000232315 Gm49681 processed_pseudogene Interval_4732 chr1 78008844 78009373 + 0 NA Intergenic Intergenic -36732 ENSMUSG00000102052.1 ENSMUSG00000102052 ENSMUST00000189245 Gm28387 lincRNA Interval_174042 chrX 131961723 131962631 + 0 NA Intergenic Intergenic -112104 ENSMUSG00000082117.1 ENSMUSG00000082117 ENSMUST00000118379 Gm4994 processed_pseudogene Interval_113016 chr4 46899830 46900232 + 0 NA intron (ENSMUSG00000039809.10, intron 1 of 18) protein_coding-intron (ENSMUSG00000039809.10, intron 1 of 18) -40129 ENSMUSG00000039809.10 ENSMUSG00000039809 ENSMUST00000206773 Gabbr2 protein_coding Interval_98212 chr2 149933581 149934604 + 0 NA intron (ENSMUSG00000074736.10, intron 3 of 3) protein_coding-intron (ENSMUSG00000074736.10, intron 4 of 4) -102450 ENSMUSG00000074737.2 ENSMUSG00000074737 ENSMUST00000099264 C530025M09Rik antisense Interval_19265 chr10 95891011 95893480 + 0 NA Intergenic Intergenic -1198 ENSMUSG00000112400.1 ENSMUSG00000112400 ENSMUST00000218392 Gm47725 lincRNA Interval_36334 chr12 41487124 41487622 + 0 NA promoter-TSS (ENSMUSG00000036295.5) protein_coding-promoter-TSS (ENSMUSG00000036295.5) -942 ENSMUSG00000036295.5 ENSMUSG00000036295 ENSMUST00000043884 Lrrn3 protein_coding Interval_14638 chr10 37377914 37378681 + 0 NA exon (ENSMUSG00000097742.1, exon 3 of 3) lincRNA-exon (ENSMUSG00000097742.1, exon 3 of 3) 40811 ENSMUSG00000097742.1 ENSMUSG00000097742 ENSMUST00000181602 Gm26535 lincRNA Interval_105821 chr3 89511129 89512712 + 0 NA Intergenic Intergenic 57379 ENSMUSG00000027952.16 ENSMUSG00000027952 ENSMUST00000184515 Pmvk protein_coding Interval_165102 chr9 44586587 44587609 + 0 NA Intergenic Intergenic 7471 ENSMUSG00000111378.1 ENSMUSG00000111378 ENSMUST00000215946 Gm47230 lincRNA Interval_62859 chr15 97460589 97461499 + 0 NA Intergenic Intergenic 97246 ENSMUSG00000116131.1 ENSMUSG00000116131 ENSMUST00000230522 Gm49506 processed_pseudogene Interval_131596 chr5 138575914 138576171 + 0 NA Intergenic Intergenic -11330 ENSMUSG00000029526.5 ENSMUSG00000029526 ENSMUST00000198778 1700123K08Rik protein_coding Interval_111468 chr4 21873630 21874535 + 0 NA promoter-TSS (ENSMUSG00000028248.15) protein_coding-promoter-TSS (ENSMUSG00000028248.15) -24630 ENSMUSG00000028247.2 ENSMUSG00000028247 ENSMUST00000142244 Coq3 protein_coding Interval_99563 chr2 163250742 163250992 + 0 NA intron (ENSMUSG00000074607.11, intron 2 of 8) protein_coding-intron (ENSMUSG00000074607.11, intron 2 of 8) 25413 ENSMUSG00000074607.11 ENSMUSG00000074607 ENSMUST00000148599 Tox2 protein_coding Interval_57850 chr15 23155157 23155407 + 0 NA TTS (ENSMUSG00000094031.1) snoRNA-TTS (ENSMUSG00000094031.1) 548 ENSMUSG00000094031.1 ENSMUSG00000094031 ENSMUST00000177548 Gm24656 snoRNA Interval_144575 chr7 26283759 26284300 + 0 NA Intergenic Intergenic -8349 ENSMUSG00000108698.2 ENSMUSG00000108698 ENSMUST00000207011 Gm44964 processed_pseudogene Interval_68276 chr16 72157948 72158169 + 0 NA Intergenic Intergenic 76269 ENSMUSG00000116769.1 ENSMUSG00000116769 ENSMUST00000231977 8030451O07Rik lincRNA Interval_71190 chr17 21029713 21030145 + 0 NA intron (ENSMUSG00000067942.6, intron 4 of 4) protein_coding-intron (ENSMUSG00000067942.6, intron 5 of 5) 20885 ENSMUSG00000067942.6 ENSMUSG00000067942 ENSMUST00000232663 Zfp160 protein_coding Interval_87220 chr19 47000761 47001023 + 0 NA intron (ENSMUSG00000025041.17, intron 1 of 17) protein_coding-intron (ENSMUSG00000025041.17, intron 1 of 17) -13806 ENSMUSG00000034336.3 ENSMUSG00000034336 ENSMUST00000037636 Ina protein_coding Interval_44059 chr13 40635819 40636351 + 0 NA Intergenic Intergenic 8564 ENSMUSG00000114322.1 ENSMUSG00000114322 ENSMUST00000225346 Gm47041 TEC Interval_51011 chr14 21601925 21602376 + 0 NA intron (ENSMUSG00000021767.19, intron 2 of 5) protein_coding-intron (ENSMUSG00000021767.19, intron 2 of 16) 85275 ENSMUSG00000021767.19 ENSMUSG00000021767 ENSMUST00000226589 Kat6b protein_coding Interval_124535 chr5 50130263 50130561 + 0 NA Intergenic Intergenic -20921 ENSMUSG00000104870.1 ENSMUSG00000104870 ENSMUST00000197958 4930448I18Rik lincRNA Interval_169076 chr9 91655536 91656398 + 0 NA Intergenic Intergenic 102179 ENSMUSG00000104216.1 ENSMUSG00000104216 ENSMUST00000194999 Gm37987 TEC Interval_103285 chr3 37994161 37994785 + 0 NA TTS (ENSMUSG00000077728.1) snoRNA-TTS (ENSMUSG00000077728.1) 762 ENSMUSG00000077728.1 ENSMUSG00000077728 ENSMUST00000104540 Gm22899 snoRNA Interval_96608 chr2 126497328 126498253 + 0 NA intron (ENSMUSG00000060131.11, intron 1 of 18) protein_coding-intron (ENSMUSG00000060131.11, intron 1 of 27) 2199 ENSMUSG00000060131.11 ENSMUSG00000060131 ENSMUST00000129187 Atp8b4 protein_coding Interval_163035 chr9 14705659 14706404 + 0 NA promoter-TSS (ENSMUSG00000036912.18) protein_coding-promoter-TSS (ENSMUSG00000036912.18) -961 ENSMUSG00000036912.18 ENSMUSG00000036912 ENSMUST00000076946 Piwil4 protein_coding Interval_7907 chr1 134513235 134513997 + 0 NA Intergenic Intergenic -4465 ENSMUSG00000096712.1 ENSMUSG00000096712 ENSMUST00000179718 Gm15454 processed_pseudogene Interval_34613 chr12 7915372 7916308 + 0 NA intron (ENSMUSG00000112006.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000112006.1, intron 1 of 1) 18267 ENSMUSG00000112465.1 ENSMUSG00000112465 ENSMUST00000220333 Gm18387 processed_pseudogene Interval_24872 chr11 40676462 40678246 + 0 NA Intergenic Intergenic -3498 ENSMUSG00000082087.4 ENSMUSG00000082087 ENSMUST00000122180 Gm12138 processed_pseudogene Interval_1620 chr1 30259396 30260289 + 0 NA Intergenic Intergenic 73555 ENSMUSG00000098883.1 ENSMUSG00000098883 ENSMUST00000184585 Gm27430 miRNA Interval_93499 chr2 73566056 73567405 + 0 NA exon (ENSMUSG00000027107.3, exon 8 of 9) protein_coding-exon (ENSMUSG00000027107.3, exon 8 of 9) 13608 ENSMUSG00000027107.3 ENSMUSG00000027107 ENSMUST00000028515 Chrna1 protein_coding Interval_160372 chr8 108792246 108793067 + 0 NA exon (ENSMUSG00000038872.10, exon 2 of 10) protein_coding-exon (ENSMUSG00000038872.10, exon 2 of 10) 55063 ENSMUSG00000104292.1 ENSMUSG00000104292 ENSMUST00000191614 Gm38042 TEC Interval_48283 chr13 97704644 97704911 + 0 NA Intergenic Intergenic 42634 ENSMUSG00000054944.7 ENSMUSG00000054944 ENSMUST00000123535 5330416C01Rik lincRNA Interval_2824 chr1 45901192 45901778 + 0 NA Intergenic Intergenic -4138 ENSMUSG00000099381.1 ENSMUSG00000099381 ENSMUST00000190055 Gm18303 processed_pseudogene Interval_112771 chr4 44851719 44852281 + 0 NA intron (ENSMUSG00000035649.17, intron 3 of 6) protein_coding-intron (ENSMUSG00000035649.17, intron 2 of 5) -13307 ENSMUSG00000094842.1 ENSMUSG00000094842 ENSMUST00000175591 Gm22639 miRNA Interval_31645 chr11 101958544 101958914 + 0 NA intron (ENSMUSG00000071818.9, intron 3 of 3) antisense-intron (ENSMUSG00000071818.9, intron 3 of 3) 6308 ENSMUSG00000071818.9 ENSMUSG00000071818 ENSMUST00000123249 4930417O22Rik antisense Interval_5166 chr1 86178598 86179311 + 0 NA exon (ENSMUSG00000062590.13, exon 10 of 10) protein_coding-exon (ENSMUSG00000062590.13, exon 10 of 10) 24155 ENSMUSG00000062590.13 ENSMUSG00000062590 ENSMUST00000126579 Armc9 protein_coding Interval_57134 chr15 6838606 6838900 + 0 NA intron (ENSMUSG00000022146.12, intron 7 of 17) protein_coding-intron (ENSMUSG00000022146.12, intron 7 of 17) 35504 ENSMUSG00000022146.12 ENSMUSG00000022146 ENSMUST00000177263 Osmr protein_coding Interval_16238 chr10 61624006 61626322 + 0 NA intron (ENSMUSG00000020090.7, intron 3 of 3) protein_coding-intron (ENSMUSG00000020090.7, intron 3 of 3) -14090 ENSMUSG00000101792.1 ENSMUSG00000101792 ENSMUST00000186283 Gm28447 processed_transcript Interval_61663 chr15 83268392 83268762 + 0 NA Intergenic Intergenic -10480 ENSMUSG00000116416.1 ENSMUSG00000116416 ENSMUST00000230161 Gm32886 processed_pseudogene Interval_58562 chr15 36148269 36148935 + 0 NA Intergenic Intergenic 16215 ENSMUSG00000048230.6 ENSMUSG00000048230 ENSMUST00000227781 Fbxo43 protein_coding Interval_113790 chr4 58624183 58624658 + 0 NA Intergenic Intergenic 13362 ENSMUSG00000083145.1 ENSMUSG00000083145 ENSMUST00000118040 Gm12579 processed_pseudogene Interval_78616 chr18 15312425 15313906 + 0 NA promoter-TSS (ENSMUSG00000117380.1) lincRNA-promoter-TSS (ENSMUSG00000117380.1) -466 ENSMUSG00000117380.1 ENSMUSG00000117380 ENSMUST00000234159 E430002N23Rik lincRNA Interval_153037 chr7 141008218 141009705 + 0 NA TTS (ENSMUSG00000025492.6) protein_coding-TTS (ENSMUSG00000025492.6) 1809 ENSMUSG00000025492.6 ENSMUSG00000025492 ENSMUST00000026565 Ifitm3 protein_coding Interval_38873 chr12 83527919 83528240 + 0 NA intron (ENSMUSG00000021222.9, intron 1 of 12) protein_coding-intron (ENSMUSG00000021222.9, intron 2 of 13) 2079 ENSMUSG00000021222.9 ENSMUSG00000021222 ENSMUST00000221944 Dcaf4 protein_coding Interval_157082 chr8 65033014 65034728 + 0 NA intron (ENSMUSG00000079042.10, intron 3 of 3) protein_coding-intron (ENSMUSG00000079042.10, intron 2 of 2) 3225 ENSMUSG00000109805.1 ENSMUSG00000109805 ENSMUST00000148141 Gm45886 processed_transcript Interval_22537 chr11 11586802 11587049 + 0 NA Intergenic Intergenic 29504 ENSMUSG00000087452.1 ENSMUSG00000087452 ENSMUST00000146304 Gm11998 antisense Interval_102151 chr3 18696898 18698388 + 0 NA Intergenic Intergenic -55434 ENSMUSG00000103264.1 ENSMUSG00000103264 ENSMUST00000194363 Gm30341 processed_pseudogene Interval_128788 chr5 115260176 115260900 + 0 NA promoter-TSS (ENSMUSG00000041740.16) protein_coding-promoter-TSS (ENSMUSG00000041740.16) -2555 ENSMUSG00000083875.1 ENSMUSG00000083875 ENSMUST00000118764 Gm13831 processed_pseudogene Interval_3466 chr1 58596354 58596587 + 0 NA TTS (ENSMUSG00000026032.8) protein_coding-TTS (ENSMUSG00000026032.8) 10086 ENSMUSG00000026032.8 ENSMUSG00000026032 ENSMUST00000027193 Ndufb3 protein_coding Interval_91579 chr2 43860961 43861221 + 0 NA intron (ENSMUSG00000049744.15, intron 5 of 5) protein_coding-intron (ENSMUSG00000049744.15, intron 5 of 13) 112222 ENSMUSG00000049744.15 ENSMUSG00000049744 ENSMUST00000128630 Arhgap15 protein_coding Interval_164331 chr9 35402549 35403171 + 0 NA Intergenic Intergenic -20728 ENSMUSG00000038119.15 ENSMUSG00000038119 ENSMUST00000127264 Cdon protein_coding Interval_76956 chr17 85151029 85151904 + 0 NA intron (ENSMUSG00000071037.6, intron 3 of 10) protein_coding-intron (ENSMUSG00000071037.6, intron 3 of 10) 60860 ENSMUSG00000071037.6 ENSMUSG00000071037 ENSMUST00000234501 Camkmt protein_coding Interval_158924 chr8 87997141 87997404 + 0 NA Intergenic Intergenic -43410 ENSMUSG00000045333.15 ENSMUSG00000045333 ENSMUST00000173092 Zfp423 protein_coding Interval_75113 chr17 63559324 63559534 + 0 NA Intergenic Intergenic -11474 ENSMUSG00000117256.1 ENSMUSG00000117256 ENSMUST00000233628 Gm5497 processed_pseudogene Interval_27273 chr11 65150837 65151037 + 0 NA TTS (ENSMUSG00000020548.10) protein_coding-TTS (ENSMUSG00000020548.10) 8954 ENSMUSG00000020548.10 ENSMUSG00000020548 ENSMUST00000108696 1700086D15Rik protein_coding Interval_119108 chr4 135599438 135600320 + 0 NA Intergenic Intergenic 16131 ENSMUSG00000088179.1 ENSMUSG00000088179 ENSMUST00000157554 Gm23106 snRNA Interval_74142 chr17 46772185 46775589 + 0 NA TTS (ENSMUSG00000062619.6) protein_coding-TTS (ENSMUSG00000062619.6) 1252 ENSMUSG00000062619.6 ENSMUSG00000062619 ENSMUST00000071430 2310039H08Rik protein_coding Interval_25006 chr11 42942133 42942426 + 0 NA Intergenic Intergenic 44784 ENSMUSG00000084627.1 ENSMUSG00000084627 ENSMUST00000122678 Gm25543 misc_RNA Interval_144899 chr7 28822588 28823712 + 0 NA TTS (ENSMUSG00000015165.16) protein_coding-TTS (ENSMUSG00000015165.16) -2067 ENSMUSG00000053898.12 ENSMUSG00000053898 ENSMUST00000137834 Ech1 protein_coding Interval_145492 chr7 35176620 35177602 + 0 NA Intergenic Intergenic -9371 ENSMUSG00000030495.12 ENSMUSG00000030495 ENSMUST00000146959 Slc7a10 protein_coding Interval_29568 chr11 84957505 84958433 + 0 NA promoter-TSS (ENSMUSG00000000805.18) protein_coding-promoter-TSS (ENSMUSG00000000805.18) 144 ENSMUSG00000000805.18 ENSMUSG00000000805 ENSMUST00000108076 Car4 protein_coding Interval_126692 chr5 92082938 92084224 + 0 NA promoter-TSS (ENSMUSG00000029405.16) protein_coding-promoter-TSS (ENSMUSG00000029405.16) -16049 ENSMUSG00000029405.16 ENSMUSG00000029405 ENSMUST00000202125 G3bp2 protein_coding Interval_60105 chr15 65786727 65787837 + 0 NA promoter-TSS (ENSMUSG00000015002.18) protein_coding-promoter-TSS (ENSMUSG00000015002.18) -63839 ENSMUSG00000015002.18 ENSMUSG00000015002 ENSMUST00000174749 Efr3a protein_coding Interval_117125 chr4 119733289 119734319 + 0 NA promoter-TSS (ENSMUSG00000028634.17) protein_coding-promoter-TSS (ENSMUSG00000028634.17) -75023 ENSMUSG00000032978.14 ENSMUSG00000032978 ENSMUST00000044426 Guca2b protein_coding Interval_59006 chr15 41644456 41644856 + 0 NA intron (ENSMUSG00000022307.16, intron 2 of 15) protein_coding-intron (ENSMUSG00000022307.16, intron 2 of 15) 144255 ENSMUSG00000097232.1 ENSMUSG00000097232 ENSMUST00000180418 Gm26854 antisense Interval_3919 chr1 64779699 64780720 + 0 NA Intergenic Intergenic -42460 ENSMUSG00000045005.9 ENSMUSG00000045005 ENSMUST00000116133 Fzd5 protein_coding Interval_59127 chr15 44410379 44410905 + 0 NA intron (ENSMUSG00000038736.10, intron 2 of 9) protein_coding-intron (ENSMUSG00000038736.10, intron 2 of 9) 17166 ENSMUSG00000038736.10 ENSMUSG00000038736 ENSMUST00000226660 Nudcd1 protein_coding Interval_89147 chr2 17338201 17338938 + 0 NA Intergenic Intergenic 52439 ENSMUSG00000053702.16 ENSMUSG00000053702 ENSMUST00000130725 Nebl protein_coding Interval_115953 chr4 106581286 106581869 + 0 NA intron (ENSMUSG00000034926.3, intron 6 of 8) protein_coding-intron (ENSMUSG00000034926.3, intron 6 of 8) 7531 ENSMUSG00000085023.1 ENSMUSG00000085023 ENSMUST00000146976 Gm12744 antisense Interval_93678 chr2 75781127 75781368 + 0 NA exon (ENSMUSG00000086813.1, exon 4 of 4) processed_transcript-exon (ENSMUSG00000086813.1, exon 4 of 4) 4059 ENSMUSG00000086813.1 ENSMUSG00000086813 ENSMUST00000135682 Gm13657 processed_transcript Interval_135152 chr6 36955260 36955835 + 0 NA intron (ENSMUSG00000029837.2, intron 2 of 4) antisense-intron (ENSMUSG00000029837.2, intron 2 of 4) -1303 ENSMUSG00000107310.1 ENSMUSG00000107310 ENSMUST00000202891 Gm7452 transcribed_processed_pseudogene Interval_17125 chr10 71479384 71480372 + 0 NA intron (ENSMUSG00000112108.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000112108.1, intron 1 of 1) -3203 ENSMUSG00000112608.1 ENSMUSG00000112608 ENSMUST00000217831 Gm46233 processed_pseudogene Interval_71666 chr17 25255517 25256698 + 0 NA intron (ENSMUSG00000047507.12, intron 1 of 4) protein_coding-intron (ENSMUSG00000047507.12, intron 1 of 33) 167 ENSMUSG00000047507.12 ENSMUSG00000047507 ENSMUST00000182978 Baiap3 protein_coding Interval_166709 chr9 62192346 62193407 + 0 NA Intergenic Intergenic -48794 ENSMUSG00000110826.1 ENSMUSG00000110826 ENSMUST00000217557 Gm47262 lincRNA Interval_122550 chr5 23755630 23756646 + 0 NA intron (ENSMUSG00000057541.14, intron 8 of 16) protein_coding-intron (ENSMUSG00000057541.14, intron 7 of 15) 19530 ENSMUSG00000057541.14 ENSMUSG00000057541 ENSMUST00000195909 Pus7 protein_coding Interval_33298 chr11 115775684 115777890 + 0 NA intron (ENSMUSG00000020747.18, intron 3 of 33) protein_coding-intron (ENSMUSG00000020747.18, intron 1 of 31) -3912 ENSMUSG00000020747.18 ENSMUSG00000020747 ENSMUST00000125918 Tmem94 protein_coding Interval_134414 chr6 28450293 28451566 + 0 NA Intergenic Intergenic -4554 ENSMUSG00000029706.15 ENSMUSG00000029706 ENSMUST00000174036 Pax4 protein_coding Interval_170498 chr9 108320380 108320584 + 0 NA intron (ENSMUSG00000007815.13, intron 2 of 5) protein_coding-intron (ENSMUSG00000007815.13, intron 2 of 5) -10764 ENSMUSG00000102554.1 ENSMUSG00000102554 ENSMUST00000191755 Gm37568 processed_pseudogene Interval_112226 chr4 36858598 36858959 + 0 NA intron (ENSMUSG00000045083.14, intron 1 of 2) protein_coding-intron (ENSMUSG00000045083.14, intron 1 of 7) -94188 ENSMUSG00000084898.1 ENSMUSG00000084898 ENSMUST00000144029 Gm12371 lincRNA Interval_112409 chr4 41089427 41090229 + 0 NA Intergenic Intergenic 4620 ENSMUSG00000028435.8 ENSMUSG00000028435 ENSMUST00000154722 Aqp3 protein_coding Interval_24204 chr11 31396053 31397435 + 0 NA Intergenic Intergenic -26697 ENSMUSG00000020303.2 ENSMUSG00000020303 ENSMUST00000134199 Stc2 protein_coding Interval_15987 chr10 59942598 59944184 + 0 NA Intergenic Intergenic 8443 ENSMUSG00000020108.4 ENSMUSG00000020108 ENSMUST00000020308 Ddit4 protein_coding Interval_6434 chr1 108546384 108547347 + 0 NA Intergenic Intergenic 65649 ENSMUSG00000101231.1 ENSMUSG00000101231 ENSMUST00000185509 Gm28283 processed_pseudogene Interval_164884 chr9 42792373 42793118 + 0 NA intron (ENSMUSG00000032017.14, intron 3 of 20) protein_coding-intron (ENSMUSG00000032017.14, intron 1 of 18) 69384 ENSMUSG00000076355.2 ENSMUSG00000076355 ENSMUST00000102400 Gm27509 miRNA Interval_143354 chr7 6085115 6085812 + 0 NA intron (ENSMUSG00000034690.13, intron 5 of 8) protein_coding-intron (ENSMUSG00000034690.13, intron 6 of 9) 24956 ENSMUSG00000034690.13 ENSMUSG00000034690 ENSMUST00000207267 Nlrp4c protein_coding Interval_68790 chr16 86645079 86645282 + 0 NA Intergenic Intergenic -113719 ENSMUSG00000116906.1 ENSMUSG00000116906 ENSMUST00000232053 Gm49572 processed_pseudogene Interval_109642 chr3 145648206 145650157 + 0 NA intron (ENSMUSG00000028195.4, intron 2 of 4) protein_coding-intron (ENSMUSG00000028195.4, intron 2 of 4) 800 ENSMUSG00000028195.4 ENSMUSG00000028195 ENSMUST00000029846 Ccn1 protein_coding Interval_127145 chr5 100597379 100598194 + 0 NA Intergenic Intergenic -5030 ENSMUSG00000104993.1 ENSMUSG00000104993 ENSMUST00000197922 Gm43510 processed_pseudogene Interval_163560 chr9 22112976 22113301 + 0 NA TTS (ENSMUSG00000098646.1) miRNA-TTS (ENSMUSG00000098646.1) 875 ENSMUSG00000098646.1 ENSMUSG00000098646 ENSMUST00000183876 Mir7084 miRNA Interval_12585 chr10 3572872 3573376 + 0 NA Intergenic Intergenic 32836 ENSMUSG00000019762.4 ENSMUSG00000019762 ENSMUST00000141745 Iyd protein_coding Interval_24799 chr11 38253266 38254429 + 0 NA Intergenic Intergenic 34778 ENSMUSG00000082587.1 ENSMUSG00000082587 ENSMUST00000120104 Gm12129 processed_pseudogene Interval_102975 chr3 33925280 33925754 + 0 NA Intergenic Intergenic -27933 ENSMUSG00000105475.1 ENSMUSG00000105475 ENSMUST00000197426 4930431L21Rik lincRNA Interval_62004 chr15 85831793 85832778 + 0 NA promoter-TSS (ENSMUSG00000035944.17) protein_coding-promoter-TSS (ENSMUSG00000035944.17) -21 ENSMUSG00000035944.17 ENSMUSG00000035944 ENSMUST00000133158 Ttc38 protein_coding Interval_65932 chr16 30323617 30323925 + 0 NA intron (ENSMUSG00000022533.14, intron 3 of 4) protein_coding-intron (ENSMUSG00000022533.14, intron 31 of 32) 10077 ENSMUSG00000022533.14 ENSMUSG00000022533 ENSMUST00000136065 Atp13a3 protein_coding Interval_144410 chr7 24987242 24987684 + 0 NA TTS (ENSMUSG00000099258.1) miRNA-TTS (ENSMUSG00000099258.1) 204 ENSMUSG00000099258.1 ENSMUSG00000099258 ENSMUST00000184595 Mir7047 miRNA Interval_68959 chr16 89699738 89701973 + 0 NA Intergenic Intergenic -66715 ENSMUSG00000116651.1 ENSMUSG00000116651 ENSMUST00000232201 Gm17844 processed_pseudogene Interval_101812 chr3 9677234 9677597 + 0 NA Intergenic Intergenic 20895 ENSMUSG00000103876.1 ENSMUSG00000103876 ENSMUST00000195844 Gm17806 processed_pseudogene Interval_12870 chr10 7117837 7118834 + 0 NA TTS (ENSMUSG00000015202.13) protein_coding-TTS (ENSMUSG00000015202.13) 17171 ENSMUSG00000015202.13 ENSMUSG00000015202 ENSMUST00000015346 Cnksr3 protein_coding Interval_108366 chr3 126008197 126008898 + 0 NA Intergenic Intergenic -92662 ENSMUSG00000032854.12 ENSMUSG00000032854 ENSMUST00000196481 Ugt8a protein_coding Interval_42111 chr13 8893433 8894989 + 0 NA Intergenic Intergenic 8217 ENSMUSG00000058258.14 ENSMUSG00000058258 ENSMUST00000176851 Idi1 protein_coding Interval_170589 chr9 109087787 109088596 + 0 NA intron (ENSMUSG00000025645.8, intron 1 of 3) protein_coding-intron (ENSMUSG00000025645.8, intron 1 of 3) 5698 ENSMUSG00000025645.8 ENSMUSG00000025645 ENSMUST00000026735 Ccdc51 protein_coding Interval_65207 chr16 20523497 20524892 + 0 NA exon (ENSMUSG00000003233.12, exon 4 of 4) protein_coding-exon (ENSMUSG00000003233.12, exon 4 of 4) -6428 ENSMUSG00000086837.1 ENSMUSG00000086837 ENSMUST00000134992 Gm16618 antisense Interval_18676 chr10 89197326 89197550 + 0 NA intron (ENSMUSG00000035189.17, intron 3 of 6) protein_coding-intron (ENSMUSG00000035189.17, intron 1 of 7) 60152 ENSMUSG00000035189.17 ENSMUSG00000035189 ENSMUST00000180843 Ano4 protein_coding Interval_85745 chr19 30244011 30244442 + 0 NA Intergenic Intergenic 11284 ENSMUSG00000024863.6 ENSMUSG00000024863 ENSMUST00000025797 Mbl2 protein_coding Interval_140129 chr6 114659891 114660631 + 0 NA intron (ENSMUSG00000030314.16, intron 1 of 3) protein_coding-intron (ENSMUSG00000030314.16, intron 1 of 18) -23023 ENSMUSG00000030314.16 ENSMUSG00000030314 ENSMUST00000182934 Atg7 protein_coding Interval_119054 chr4 135247227 135247592 + 0 NA intron (ENSMUSG00000037242.8, intron 1 of 2) protein_coding-intron (ENSMUSG00000037242.8, intron 1 of 5) 25405 ENSMUSG00000037242.8 ENSMUSG00000037242 ENSMUST00000143370 Clic4 protein_coding Interval_157044 chr8 64756023 64756278 + 0 NA intron (ENSMUSG00000031605.8, intron 8 of 13) protein_coding-intron (ENSMUSG00000031605.8, intron 8 of 14) -25091 ENSMUSG00000031604.10 ENSMUSG00000031604 ENSMUST00000141021 Msmo1 protein_coding Interval_151901 chr7 127421162 127422539 + 0 NA promoter-TSS (ENSMUSG00000045251.13) protein_coding-promoter-TSS (ENSMUSG00000045251.13) 189 ENSMUSG00000045251.13 ENSMUSG00000045251 ENSMUST00000129038 Zfp688 protein_coding Interval_134158 chr6 22086150 22086770 + 0 NA intron (ENSMUSG00000062980.15, intron 4 of 8) protein_coding-intron (ENSMUSG00000062980.15, intron 5 of 9) 60517 ENSMUSG00000062980.15 ENSMUSG00000062980 ENSMUST00000154734 Cped1 protein_coding Interval_170787 chr9 110759101 110759364 + 0 NA intron (ENSMUSG00000059741.13, intron 1 of 5) protein_coding-intron (ENSMUSG00000059741.13, intron 1 of 5) -12176 ENSMUSG00000032492.14 ENSMUSG00000032492 ENSMUST00000199791 Pth1r protein_coding Interval_18446 chr10 86064720 86065484 + 0 NA intron (ENSMUSG00000059602.14, intron 10 of 13) protein_coding-intron (ENSMUSG00000059602.14, intron 10 of 13) -26314 ENSMUSG00000077265.1 ENSMUSG00000077265 ENSMUST00000104077 Gm24430 snRNA Interval_28834 chr11 78640411 78640714 + 0 NA intron (ENSMUSG00000017376.15, intron 1 of 2) protein_coding-intron (ENSMUSG00000017376.15, intron 1 of 10) -55007 ENSMUSG00000082110.1 ENSMUSG00000082110 ENSMUST00000119052 Gm11196 processed_pseudogene Interval_136365 chr6 53807117 53807367 + 0 NA Intergenic Intergenic -11501 ENSMUSG00000108175.1 ENSMUSG00000108175 ENSMUST00000204648 Gm16499 antisense Interval_21246 chr10 127444137 127444329 + 0 NA promoter-TSS (ENSMUSG00000025404.15) protein_coding-promoter-TSS (ENSMUSG00000025404.15) -15302 ENSMUSG00000025404.15 ENSMUSG00000025404 ENSMUST00000171426 R3hdm2 protein_coding Interval_139738 chr6 108258639 108258897 + 0 NA intron (ENSMUSG00000030102.11, intron 1 of 22) protein_coding-intron (ENSMUSG00000030102.11, intron 4 of 61) -73212 ENSMUSG00000030101.15 ENSMUSG00000030101 ENSMUST00000171697 Sumf1 protein_coding Interval_32722 chr11 110031168 110031492 + 0 NA intron (ENSMUSG00000041828.15, intron 32 of 38) protein_coding-intron (ENSMUSG00000041828.15, intron 32 of 38) 34043 ENSMUSG00000041828.15 ENSMUSG00000041828 ENSMUST00000106662 Abca8a protein_coding Interval_63130 chr15 99249051 99249340 + 0 NA promoter-TSS (ENSMUSG00000037570.16) protein_coding-promoter-TSS (ENSMUSG00000037570.16) -316 ENSMUSG00000100599.2 ENSMUSG00000100599 ENSMUST00000190683 1700120C14Rik processed_transcript Interval_112848 chr4 45495409 45495913 + 0 NA intron (ENSMUSG00000044813.15, intron 1 of 2) protein_coding-intron (ENSMUSG00000044813.15, intron 1 of 5) 4891 ENSMUSG00000088892.1 ENSMUSG00000088892 ENSMUST00000158267 Gm22518 miRNA Interval_39328 chr12 86767504 86769255 + 0 NA Intergenic Intergenic 34010 ENSMUSG00000059114.8 ENSMUSG00000059114 ENSMUST00000223197 Lrrc74a protein_coding Interval_135372 chr6 38688754 38689000 + 0 NA Intergenic Intergenic 24998 ENSMUSG00000079598.4 ENSMUSG00000079598 ENSMUST00000238216 Clec2l protein_coding Interval_153788 chr8 8608818 8610007 + 0 NA Intergenic Intergenic -2852 ENSMUSG00000109436.1 ENSMUSG00000109436 ENSMUST00000208426 Gm45075 lincRNA Interval_130959 chr5 134266238 134267544 + 0 NA TTS (ENSMUSG00000107000.1) TEC-TTS (ENSMUSG00000107000.1) 3845 ENSMUSG00000107000.1 ENSMUSG00000107000 ENSMUST00000201715 Gm43481 TEC Interval_28585 chr11 76987146 76988491 + 0 NA TTS (ENSMUSG00000020840.10) protein_coding-TTS (ENSMUSG00000020840.10) 13732 ENSMUSG00000088913.1 ENSMUSG00000088913 ENSMUST00000158288 Gm22611 snRNA Interval_140548 chr6 119442840 119443265 + 0 NA intron (ENSMUSG00000030170.14, intron 3 of 4) protein_coding-intron (ENSMUSG00000030170.14, intron 3 of 4) -25577 ENSMUSG00000030168.13 ENSMUSG00000030168 ENSMUST00000189710 Adipor2 protein_coding Interval_32515 chr11 108045325 108045521 + 0 NA intron (ENSMUSG00000050965.14, intron 5 of 16) protein_coding-intron (ENSMUSG00000050965.14, intron 5 of 16) -32618 ENSMUSG00000050965.14 ENSMUSG00000050965 ENSMUST00000134725 Prkca protein_coding Interval_39946 chr12 100008246 100008463 + 0 NA intron (ENSMUSG00000045404.16, intron 2 of 2) protein_coding-intron (ENSMUSG00000045404.16, intron 2 of 2) -25502 ENSMUSG00000093352.1 ENSMUSG00000093352 ENSMUST00000175611 Gm23291 miRNA Interval_106202 chr3 94564553 94565995 + 0 NA intron (ENSMUSG00000028136.15, intron 1 of 11) protein_coding-intron (ENSMUSG00000028136.15, intron 1 of 11) -3242 ENSMUSG00000028136.15 ENSMUSG00000028136 ENSMUST00000198902 Snx27 protein_coding Interval_39348 chr12 86850169 86850413 + 0 NA Intergenic Intergenic -3824 ENSMUSG00000113555.1 ENSMUSG00000113555 ENSMUST00000222765 Gm10095 processed_pseudogene Interval_4406 chr1 73949057 73949299 + 0 NA intron (ENSMUSG00000055322.16, intron 19 of 32) protein_coding-intron (ENSMUSG00000055322.16, intron 19 of 34) -93603 ENSMUSG00000098504.1 ENSMUSG00000098504 ENSMUST00000183826 Mir6351 miRNA Interval_64487 chr16 12259091 12260156 + 0 NA intron (ENSMUSG00000022494.15, intron 4 of 4) protein_coding-intron (ENSMUSG00000022494.15, intron 3 of 3) 121879 ENSMUSG00000116403.1 ENSMUSG00000116403 ENSMUST00000231026 Gm19571 processed_pseudogene Interval_138845 chr6 92499113 92499666 + 0 NA intron (ENSMUSG00000030020.13, intron 2 of 8) protein_coding-intron (ENSMUSG00000030020.13, intron 2 of 8) -62388 ENSMUSG00000098130.1 ENSMUSG00000098130 ENSMUST00000182175 Gm17797 processed_pseudogene Interval_60435 chr15 73731810 73733408 + 0 NA intron (ENSMUSG00000059895.13, intron 1 of 5) protein_coding-intron (ENSMUSG00000059895.13, intron 1 of 5) 3445 ENSMUSG00000084493.1 ENSMUSG00000084493 ENSMUST00000122544 Gm22106 snRNA Interval_158258 chr8 80650866 80651088 + 0 NA intron (ENSMUSG00000042353.9, intron 2 of 7) protein_coding-intron (ENSMUSG00000042353.9, intron 2 of 7) 39897 ENSMUSG00000042353.9 ENSMUSG00000042353 ENSMUST00000039695 Frem3 protein_coding Interval_145694 chr7 37474332 37474543 + 0 NA intron (ENSMUSG00000043456.17, intron 1 of 1) protein_coding-intron (ENSMUSG00000043456.17, intron 1 of 1) -7015 ENSMUSG00000108790.1 ENSMUSG00000108790 ENSMUST00000205574 Gm44806 TEC Interval_64257 chr16 9931958 9932220 + 0 NA intron (ENSMUSG00000059003.12, intron 3 of 13) protein_coding-intron (ENSMUSG00000059003.12, intron 1 of 11) 62834 ENSMUSG00000059003.12 ENSMUSG00000059003 ENSMUST00000197242 Grin2a protein_coding Interval_101137 chr2 178327165 178327954 + 0 NA promoter-TSS (ENSMUSG00000027525.18) protein_coding-promoter-TSS (ENSMUSG00000027525.18) 3 ENSMUSG00000027525.18 ENSMUSG00000027525 ENSMUST00000133267 Phactr3 protein_coding Interval_47308 chr13 81008429 81009524 + 0 NA intron (ENSMUSG00000097098.8, intron 1 of 1) antisense-intron (ENSMUSG00000097098.8, intron 1 of 1) 7584 ENSMUSG00000114801.1 ENSMUSG00000114801 ENSMUST00000225685 Gm48549 processed_pseudogene Interval_153475 chr7 145048035 145048625 + 0 NA Intergenic Intergenic -108405 ENSMUSG00000070348.5 ENSMUSG00000070348 ENSMUST00000135985 Ccnd1 protein_coding Interval_17715 chr10 79716199 79718428 + 0 NA intron (ENSMUSG00000020331.9, intron 1 of 7) protein_coding-intron (ENSMUSG00000020331.9, intron 1 of 8) 679 ENSMUSG00000020331.9 ENSMUSG00000020331 ENSMUST00000020581 Hcn2 protein_coding Interval_63568 chr15 102089375 102090535 + 0 NA TTS (ENSMUSG00000058655.9) protein_coding-TTS (ENSMUSG00000058655.9) -14470 ENSMUSG00000037003.16 ENSMUSG00000037003 ENSMUST00000229800 Tns2 protein_coding Interval_6264 chr1 104986175 104986809 + 0 NA intron (ENSMUSG00000050840.8, intron 11 of 11) protein_coding-intron (ENSMUSG00000050840.8, intron 11 of 11) -74159 ENSMUSG00000089866.1 ENSMUSG00000089866 ENSMUST00000159213 Gm15699 antisense Interval_75373 chr17 66219564 66220093 + 0 NA Intergenic Intergenic 8199 ENSMUSG00000117246.1 ENSMUSG00000117246 ENSMUST00000232894 Gm17891 processed_pseudogene Interval_111095 chr4 12006144 12006453 + 0 NA intron (ENSMUSG00000085027.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000085027.1, intron 1 of 1) 2745 ENSMUSG00000085027.1 ENSMUSG00000085027 ENSMUST00000156947 Gm11840 lincRNA Interval_105276 chr3 84460572 84461816 + 0 NA intron (ENSMUSG00000041842.15, intron 4 of 11) protein_coding-intron (ENSMUSG00000041842.15, intron 4 of 11) 19199 ENSMUSG00000041842.15 ENSMUSG00000041842 ENSMUST00000131065 Fhdc1 protein_coding Interval_90944 chr2 33635978 33636393 + 0 NA intron (ENSMUSG00000038765.14, intron 2 of 7) protein_coding-intron (ENSMUSG00000038765.14, intron 2 of 7) 4326 ENSMUSG00000038765.14 ENSMUSG00000038765 ENSMUST00000137559 Lmx1b protein_coding Interval_21523 chr10 129124413 129124833 + 0 NA Intergenic Intergenic -6762 ENSMUSG00000042801.5 ENSMUSG00000042801 ENSMUST00000050915 Olfr769 protein_coding Interval_102526 chr3 27491309 27491749 + 0 NA intron (ENSMUSG00000039286.12, intron 10 of 26) protein_coding-intron (ENSMUSG00000039286.12, intron 9 of 25) -55112 ENSMUSG00000106625.1 ENSMUSG00000106625 ENSMUST00000198723 Gm43344 TEC Interval_109551 chr3 144399174 144400569 + 0 NA Intergenic Intergenic 27801 ENSMUSG00000106416.1 ENSMUSG00000106416 ENSMUST00000198953 Gm5857 processed_pseudogene Interval_77218 chr17 87427079 87428777 + 0 NA promoter-TSS (ENSMUSG00000036557.8) protein_coding-promoter-TSS (ENSMUSG00000036557.8) -293 ENSMUSG00000036557.8 ENSMUSG00000036557 ENSMUST00000189487 Stpg4 protein_coding Interval_117679 chr4 125511961 125512330 + 0 NA intron (ENSMUSG00000001985.9, intron 1 of 15) protein_coding-intron (ENSMUSG00000001985.9, intron 1 of 15) 7396 ENSMUSG00000094403.1 ENSMUSG00000094403 ENSMUST00000102081 Mir692-2 miRNA Interval_48396 chr13 98753781 98754074 + 0 NA TTS (ENSMUSG00000041685.16) protein_coding-TTS (ENSMUSG00000041685.16) -4607 ENSMUSG00000041685.16 ENSMUSG00000041685 ENSMUST00000224416 Fcho2 protein_coding Interval_12447 chr1 193522644 193522853 + 0 NA Intergenic Intergenic -12574 ENSMUSG00000097850.2 ENSMUSG00000097850 ENSMUST00000180420 Mir205hg lincRNA Interval_72131 chr17 28207217 28208464 + 0 NA promoter-TSS (ENSMUSG00000002257.8) protein_coding-promoter-TSS (ENSMUSG00000002257.8) 14 ENSMUSG00000002257.8 ENSMUSG00000002257 ENSMUST00000233534 Def6 protein_coding Interval_51206 chr14 24993692 24994671 + 0 NA Intergenic Intergenic -36916 ENSMUSG00000114416.1 ENSMUSG00000114416 ENSMUST00000224831 Gm47907 TEC Interval_74328 chr17 48999222 49000275 + 0 NA intron (ENSMUSG00000040490.4, intron 1 of 2) protein_coding-intron (ENSMUSG00000040490.4, intron 1 of 2) 67369 ENSMUSG00000040490.4 ENSMUSG00000040490 ENSMUST00000046254 Lrfn2 protein_coding Interval_99189 chr2 157913211 157915261 + 0 NA promoter-TSS (ENSMUSG00000037843.6) protein_coding-promoter-TSS (ENSMUSG00000037843.6) -417 ENSMUSG00000037843.6 ENSMUSG00000037843 ENSMUST00000109523 Vstm2l protein_coding Interval_112688 chr4 44083303 44084981 + 0 NA promoter-TSS (ENSMUSG00000028479.18) protein_coding-promoter-TSS (ENSMUSG00000028479.18) -2742 ENSMUSG00000088532.1 ENSMUSG00000088532 ENSMUST00000157907 Gm22706 snRNA Interval_120380 chr4 148214018 148214393 + 0 NA Intergenic Intergenic 46546 ENSMUSG00000041544.11 ENSMUSG00000041544 ENSMUST00000129734 Disp3 protein_coding Interval_89410 chr2 20532583 20532967 + 0 NA intron (ENSMUSG00000036617.17, intron 3 of 3) protein_coding-intron (ENSMUSG00000036617.17, intron 3 of 18) 22728 ENSMUSG00000036617.17 ENSMUSG00000036617 ENSMUST00000156587 Etl4 protein_coding Interval_101471 chr2 181623172 181623967 + 0 NA intron (ENSMUSG00000002455.14, intron 6 of 11) protein_coding-intron (ENSMUSG00000002455.14, intron 6 of 20) 22196 ENSMUSG00000002455.14 ENSMUSG00000002455 ENSMUST00000139955 Prpf6 protein_coding Interval_146462 chr7 46092997 46093234 + 0 NA promoter-TSS (ENSMUSG00000109882.1) processed_pseudogene-promoter-TSS (ENSMUSG00000109882.1) -154 ENSMUSG00000109882.1 ENSMUSG00000109882 ENSMUST00000210053 Gm18706 processed_pseudogene Interval_70019 chr17 4600750 4600950 + 0 NA Intergenic Intergenic -34128 ENSMUSG00000116767.1 ENSMUSG00000116767 ENSMUST00000232624 4930517M08Rik lincRNA Interval_156499 chr8 48748196 48749066 + 0 NA intron (ENSMUSG00000031561.16, intron 1 of 2) protein_coding-intron (ENSMUSG00000031561.16, intron 1 of 2) -95091 ENSMUSG00000100706.6 ENSMUSG00000100706 ENSMUST00000188936 Gm19744 processed_transcript Interval_13930 chr10 24765143 24765585 + 0 NA Intergenic Intergenic -53367 ENSMUSG00000037370.13 ENSMUSG00000037370 ENSMUST00000142974 Enpp1 protein_coding Interval_116337 chr4 109967188 109967613 + 0 NA Intergenic Intergenic 10413 ENSMUSG00000085256.1 ENSMUSG00000085256 ENSMUST00000124754 Dmrta2os antisense Interval_169916 chr9 102942249 102942546 + 0 NA Intergenic Intergenic 43842 ENSMUSG00000032547.12 ENSMUSG00000032547 ENSMUST00000177274 Ryk protein_coding Interval_71566 chr17 24583213 24584243 + 0 NA TTS (ENSMUSG00000032855.6) protein_coding-TTS (ENSMUSG00000032855.6) -3891 ENSMUSG00000032855.6 ENSMUSG00000032855 ENSMUST00000228581 Pkd1 protein_coding Interval_101757 chr3 9432669 9432897 + 0 NA exon (ENSMUSG00000040209.12, exon 9 of 9) protein_coding-exon (ENSMUSG00000040209.12, exon 9 of 9) 29703 ENSMUSG00000097365.7 ENSMUSG00000097365 ENSMUST00000181930 C030034L19Rik lincRNA Interval_86272 chr19 38308236 38309154 + 0 NA exon (ENSMUSG00000067242.11, exon 8 of 8) protein_coding-exon (ENSMUSG00000067242.11, exon 8 of 8) 6575 ENSMUSG00000105709.1 ENSMUSG00000105709 ENSMUST00000199966 Gm42723 antisense Interval_39204 chr12 85818567 85819353 + 0 NA TTS (ENSMUSG00000021252.11) protein_coding-TTS (ENSMUSG00000021252.11) 3290 ENSMUSG00000021252.11 ENSMUSG00000021252 ENSMUST00000142331 Erg28 protein_coding Interval_160378 chr8 108822771 108823729 + 0 NA intron (ENSMUSG00000038872.10, intron 9 of 15) protein_coding-intron (ENSMUSG00000038872.10, intron 3 of 9) -44312 ENSMUSG00000102989.1 ENSMUSG00000102989 ENSMUST00000195769 Gm38318 TEC Interval_37605 chr12 70246233 70246448 + 0 NA exon (ENSMUSG00000021071.17, exon 12 of 12) protein_coding-exon (ENSMUSG00000021071.17, exon 12 of 12) -4825 ENSMUSG00000113694.1 ENSMUSG00000113694 ENSMUST00000222173 Gm48747 antisense Interval_130261 chr5 125270724 125272336 + 0 NA intron (ENSMUSG00000105039.1, intron 1 of 3) lincRNA-intron (ENSMUSG00000105039.1, intron 1 of 3) 1285 ENSMUSG00000105039.1 ENSMUSG00000105039 ENSMUST00000198586 Gm32585 lincRNA Interval_35669 chr12 27247768 27248001 + 0 NA Intergenic Intergenic 18683 ENSMUSG00000114083.1 ENSMUSG00000114083 ENSMUST00000221503 Gm47860 transcribed_processed_pseudogene Interval_107196 chr3 104511247 104512390 + 0 NA promoter-TSS (ENSMUSG00000032913.13) protein_coding-promoter-TSS (ENSMUSG00000032913.13) -505 ENSMUSG00000105659.1 ENSMUSG00000105659 ENSMUST00000196088 4930509H03Rik sense_intronic Interval_115470 chr4 99208859 99210443 + 0 NA intron (ENSMUSG00000028550.15, intron 1 of 10) protein_coding-intron (ENSMUSG00000028550.15, intron 1 of 10) 15504 ENSMUSG00000028550.15 ENSMUSG00000028550 ENSMUST00000152121 Atg4c protein_coding Interval_34491 chr12 4592365 4593794 + 0 NA promoter-TSS (ENSMUSG00000020640.10) protein_coding-promoter-TSS (ENSMUSG00000020640.10) -50 ENSMUSG00000118449.1 ENSMUSG00000118449 ENSMUST00000170816 AC241534.1 bidirectional_promoter_lncRNA Interval_60486 chr15 74260194 74261117 + 0 NA Intergenic Intergenic -166322 ENSMUSG00000082585.3 ENSMUSG00000082585 ENSMUST00000120421 Gm15387 processed_pseudogene Interval_26567 chr11 58948255 58949714 + 0 NA promoter-TSS (ENSMUSG00000056895.4) protein_coding-promoter-TSS (ENSMUSG00000056895.4) 64 ENSMUSG00000056895.4 ENSMUSG00000056895 ENSMUST00000078267 H2bu2 protein_coding Interval_146457 chr7 46057936 46058950 + 0 NA promoter-TSS (ENSMUSG00000030835.6) protein_coding-promoter-TSS (ENSMUSG00000030835.6) 4283 ENSMUSG00000030835.6 ENSMUSG00000030835 ENSMUST00000182305 Nomo1 protein_coding Interval_128470 chr5 113506209 113507436 + 0 NA intron (ENSMUSG00000063430.9, intron 1 of 1) protein_coding-intron (ENSMUSG00000063430.9, intron 1 of 8) -71966 ENSMUSG00000063430.9 ENSMUSG00000063430 ENSMUST00000198673 Wscd2 protein_coding Interval_157620 chr8 71753184 71754034 + 0 NA exon (ENSMUSG00000110462.1, exon 4 of 4) lincRNA-exon (ENSMUSG00000110462.1, exon 4 of 4) -6509 ENSMUSG00000110473.1 ENSMUSG00000110473 ENSMUST00000212598 Gm29705 processed_pseudogene Interval_99488 chr2 162436173 162437048 + 0 NA intron (ENSMUSG00000053141.16, intron 1 of 29) protein_coding-intron (ENSMUSG00000053141.16, intron 1 of 30) 45797 ENSMUSG00000084919.1 ENSMUSG00000084919 ENSMUST00000151688 Ptprtos antisense Interval_166791 chr9 62743393 62744787 + 0 NA intron (ENSMUSG00000032243.8, intron 8 of 27) protein_coding-intron (ENSMUSG00000032243.8, intron 8 of 29) -45814 ENSMUSG00000111537.1 ENSMUSG00000111537 ENSMUST00000214567 Gm7653 processed_pseudogene Interval_21378 chr10 128262070 128263238 + 0 NA Intergenic Intergenic -5343 ENSMUSG00000047631.4 ENSMUSG00000047631 ENSMUST00000050901 Apof protein_coding Interval_157693 chr8 72327373 72327992 + 0 NA Intergenic Intergenic 8649 ENSMUSG00000055148.7 ENSMUSG00000055148 ENSMUST00000067912 Klf2 protein_coding Interval_156633 chr8 56063227 56063488 + 0 NA intron (ENSMUSG00000038257.10, intron 5 of 9) protein_coding-intron (ENSMUSG00000038257.10, intron 5 of 9) -46257 ENSMUSG00000109662.1 ENSMUSG00000109662 ENSMUST00000209828 Gm45366 processed_pseudogene Interval_62361 chr15 91055871 91056865 + 0 NA Intergenic Intergenic -17794 ENSMUSG00000115952.1 ENSMUSG00000115952 ENSMUST00000230093 Gm18814 processed_pseudogene Interval_98377 chr2 151958981 151959749 + 0 NA Intergenic Intergenic 8252 ENSMUSG00000088491.1 ENSMUSG00000088491 ENSMUST00000157866 Mir1953 miRNA Interval_26155 chr11 54777172 54777854 + 0 NA intron (ENSMUSG00000052298.12, intron 1 of 4) protein_coding-intron (ENSMUSG00000052298.12, intron 1 of 5) 10133 ENSMUSG00000052298.12 ENSMUSG00000052298 ENSMUST00000123424 Cdc42se2 protein_coding Interval_143026 chr6 148647688 148648938 + 0 NA Intergenic Intergenic -5653 ENSMUSG00000065269.1 ENSMUSG00000065269 ENSMUST00000083335 Gm23456 snoRNA Interval_166201 chr9 57467291 57468467 + 0 NA exon (ENSMUSG00000040722.7, exon 1 of 5) protein_coding-exon (ENSMUSG00000040722.7, exon 1 of 5) 158 ENSMUSG00000040722.7 ENSMUSG00000040722 ENSMUST00000215059 Scamp5 protein_coding Interval_45070 chr13 51845584 51848078 + 0 NA promoter-TSS (ENSMUSG00000021453.2) protein_coding-promoter-TSS (ENSMUSG00000021453.2) 87 ENSMUSG00000021453.2 ENSMUSG00000021453 ENSMUST00000132480 Gadd45g protein_coding Interval_131734 chr5 139565648 139565983 + 0 NA Intergenic Intergenic 21917 ENSMUSG00000029546.12 ENSMUSG00000029546 ENSMUST00000174792 Uncx protein_coding Interval_12478 chr1 193915207 193915406 + 0 NA Intergenic Intergenic 48297 ENSMUSG00000104182.1 ENSMUSG00000104182 ENSMUST00000194272 Gm21362 processed_pseudogene Interval_63949 chr16 4718661 4720003 + 0 NA promoter-TSS (ENSMUSG00000063445.14) protein_coding-promoter-TSS (ENSMUSG00000063445.14) -228 ENSMUSG00000063445.14 ENSMUSG00000063445 ENSMUST00000125140 Nmral1 protein_coding Interval_145225 chr7 30781835 30782062 + 0 NA TTS (ENSMUSG00000060962.12) protein_coding-TTS (ENSMUSG00000060962.12) -5957 ENSMUSG00000074199.7 ENSMUSG00000074199 ENSMUST00000188036 Krtdap protein_coding Interval_33161 chr11 114836964 114837746 + 0 NA Intergenic Intergenic -14185 ENSMUSG00000051043.16 ENSMUSG00000051043 ENSMUST00000152314 Gprc5c protein_coding Interval_157492 chr8 70868505 70869911 + 0 NA TTS (ENSMUSG00000007721.6) protein_coding-TTS (ENSMUSG00000007721.6) 4175 ENSMUSG00000007721.6 ENSMUSG00000007721 ENSMUST00000212680 Ccdc124 protein_coding Interval_117018 chr4 119040099 119040993 + 0 NA Intergenic Intergenic 28565 ENSMUSG00000066060.5 ENSMUSG00000066060 ENSMUST00000128998 Gm12866 lincRNA Interval_95213 chr2 104840902 104841416 + 0 NA intron (ENSMUSG00000027171.10, intron 3 of 3) protein_coding-intron (ENSMUSG00000027171.10, intron 4 of 5) 8334 ENSMUSG00000027171.10 ENSMUSG00000027171 ENSMUST00000126824 Prrg4 protein_coding Interval_950 chr1 13355345 13356306 + 0 NA exon (ENSMUSG00000102664.1, exon 1 of 1) TEC-exon (ENSMUSG00000102664.1, exon 1 of 1) 905 ENSMUSG00000102664.1 ENSMUSG00000102664 ENSMUST00000195718 Gm38380 TEC Interval_101346 chr2 180657043 180657947 + 0 NA TTS (ENSMUSG00000038914.15) protein_coding-TTS (ENSMUSG00000038914.15) -14906 ENSMUSG00000038932.13 ENSMUSG00000038932 ENSMUST00000131881 Tcfl5 protein_coding Interval_75370 chr17 66190068 66191021 + 0 NA TTS (ENSMUSG00000117312.1) processed_pseudogene-TTS (ENSMUSG00000117312.1) 2286 ENSMUSG00000117312.1 ENSMUSG00000117312 ENSMUST00000233423 Gm49931 processed_pseudogene Interval_53738 chr14 61327160 61328608 + 0 NA Intergenic Intergenic -2074 ENSMUSG00000114642.1 ENSMUSG00000114642 ENSMUST00000223938 Gm5461 processed_pseudogene Interval_111007 chr4 11166275 11167223 + 0 NA TTS (ENSMUSG00000028211.11) protein_coding-TTS (ENSMUSG00000028211.11) 10305 ENSMUSG00000028211.11 ENSMUSG00000028211 ENSMUST00000132346 Trp53inp1 protein_coding Interval_126947 chr5 98115517 98115770 + 0 NA Intergenic Intergenic -37538 ENSMUSG00000098073.1 ENSMUSG00000098073 ENSMUST00000182555 Gm8048 processed_pseudogene Interval_168093 chr9 76236012 76237570 + 0 NA intron (ENSMUSG00000032360.16, intron 4 of 6) protein_coding-intron (ENSMUSG00000032360.16, intron 4 of 7) -23134 ENSMUSG00000059383.14 ENSMUSG00000059383 ENSMUST00000074880 Gfral protein_coding Interval_32387 chr11 107287073 107288036 + 0 NA intron (ENSMUSG00000040430.18, intron 5 of 7) protein_coding-intron (ENSMUSG00000040430.18, intron 4 of 7) -43154 ENSMUSG00000081995.1 ENSMUSG00000081995 ENSMUST00000119399 Gm11719 processed_pseudogene Interval_96055 chr2 119486171 119487620 + 0 NA Intergenic Intergenic 22334 ENSMUSG00000082369.1 ENSMUSG00000082369 ENSMUST00000119645 Gm14208 processed_pseudogene Interval_144346 chr7 24607969 24608556 + 0 NA intron (ENSMUSG00000064254.6, intron 6 of 7) protein_coding-intron (ENSMUSG00000064254.6, intron 6 of 7) -2501 ENSMUSG00000074277.4 ENSMUSG00000074277 ENSMUST00000205330 Phldb3 protein_coding Interval_64489 chr16 12462014 12463132 + 0 NA Intergenic Intergenic -53396 ENSMUSG00000116013.1 ENSMUSG00000116013 ENSMUST00000231050 C87114 processed_pseudogene Interval_13912 chr10 24595269 24596587 + 0 NA promoter-TSS (ENSMUSG00000087400.8) processed_transcript-promoter-TSS (ENSMUSG00000087400.8) 202 ENSMUSG00000019997.11 ENSMUSG00000019997 ENSMUST00000129142 Ccn2 protein_coding Interval_52571 chr14 47574528 47575434 + 0 NA Intergenic Intergenic 5455 ENSMUSG00000115571.1 ENSMUSG00000115571 ENSMUST00000228790 Gm6616 processed_pseudogene Interval_78471 chr18 13153977 13154824 + 0 NA Intergenic Intergenic -1595 ENSMUSG00000117583.1 ENSMUSG00000117583 ENSMUST00000234898 Gm18083 processed_pseudogene Interval_87117 chr19 46244446 46245255 + 0 NA intron (ENSMUSG00000025224.16, intron 3 of 18) protein_coding-intron (ENSMUSG00000025224.16, intron 3 of 39) 22819 ENSMUSG00000086816.1 ENSMUSG00000086816 ENSMUST00000130184 Gm16726 antisense Interval_139338 chr6 99081286 99081560 + 0 NA intron (ENSMUSG00000030067.17, intron 1 of 15) protein_coding-intron (ENSMUSG00000030067.17, intron 1 of 15) -5366 ENSMUSG00000105902.1 ENSMUSG00000105902 ENSMUST00000200105 Gm49348 miRNA Interval_150239 chr7 108821393 108821601 + 0 NA Intergenic Intergenic 4500 ENSMUSG00000066241.2 ENSMUSG00000066241 ENSMUST00000084754 Olfr514 protein_coding Interval_33238 chr11 115419639 115420746 + 0 NA promoter-TSS (ENSMUSG00000034566.10) protein_coding-promoter-TSS (ENSMUSG00000034566.10) -120 ENSMUSG00000016940.18 ENSMUSG00000016940 ENSMUST00000143775 Kctd2 protein_coding Interval_91724 chr2 48868000 48868415 + 0 NA intron (ENSMUSG00000052155.5, intron 1 of 10) protein_coding-intron (ENSMUSG00000052155.5, intron 1 of 10) -22182 ENSMUSG00000052155.5 ENSMUSG00000052155 ENSMUST00000156681 Acvr2a protein_coding Interval_149713 chr7 100862756 100863805 + 0 NA promoter-TSS (ENSMUSG00000008318.10) protein_coding-promoter-TSS (ENSMUSG00000008318.10) -7851 ENSMUSG00000008318.10 ENSMUSG00000008318 ENSMUST00000142885 Relt protein_coding Interval_97316 chr2 133797407 133799048 + 0 NA Intergenic Intergenic -213806 ENSMUSG00000064983.1 ENSMUSG00000064983 ENSMUST00000083049 Gm25258 snRNA Interval_106345 chr3 95516754 95518047 + 0 NA Intergenic Intergenic -9386 ENSMUSG00000038642.10 ENSMUSG00000038642 ENSMUST00000116304 Ctss protein_coding Interval_105145 chr3 82620906 82621226 + 0 NA Intergenic Intergenic 43489 ENSMUSG00000102514.1 ENSMUSG00000102514 ENSMUST00000191836 Gm35323 processed_pseudogene Interval_117918 chr4 127051818 127053102 + 0 NA intron (ENSMUSG00000043872.14, intron 1 of 4) protein_coding-intron (ENSMUSG00000043872.14, intron 2 of 5) -3802 ENSMUSG00000084149.1 ENSMUSG00000084149 ENSMUST00000119262 Gm12944 processed_pseudogene Interval_104326 chr3 63399275 63399522 + 0 NA Intergenic Intergenic -39853 ENSMUSG00000104336.1 ENSMUSG00000104336 ENSMUST00000192500 Gm34240 lincRNA Interval_32746 chr11 110298120 110298438 + 0 NA intron (ENSMUSG00000018800.14, intron 19 of 27) protein_coding-intron (ENSMUSG00000018800.14, intron 18 of 38) 39437 ENSMUSG00000018800.14 ENSMUSG00000018800 ENSMUST00000148984 Abca5 protein_coding Interval_32913 chr11 113066955 113067468 + 0 NA intron (ENSMUSG00000087259.7, intron 1 of 1) lincRNA-intron (ENSMUSG00000087259.7, intron 2 of 2) 105866 ENSMUSG00000087259.7 ENSMUSG00000087259 ENSMUST00000150712 2610035D17Rik lincRNA Interval_76370 chr17 79661205 79662254 + 0 NA intron (ENSMUSG00000036368.8, intron 5 of 10) protein_coding-intron (ENSMUSG00000036368.8, intron 5 of 10) -10671 ENSMUSG00000036368.8 ENSMUSG00000036368 ENSMUST00000224097 Rmdn2 protein_coding Interval_871 chr1 12834280 12837470 + 0 NA promoter-TSS (ENSMUSG00000016918.15) protein_coding-promoter-TSS (ENSMUSG00000016918.15) 116411 ENSMUSG00000016918.15 ENSMUSG00000016918 ENSMUST00000185780 Sulf1 protein_coding Interval_160017 chr8 105793710 105794475 + 0 NA intron (ENSMUSG00000037415.7, intron 3 of 13) protein_coding-intron (ENSMUSG00000037415.7, intron 3 of 13) 33258 ENSMUSG00000037415.7 ENSMUSG00000037415 ENSMUST00000212856 Ranbp10 protein_coding Interval_36596 chr12 51089656 51090036 + 0 NA Intergenic Intergenic 4159 ENSMUSG00000088966.1 ENSMUSG00000088966 ENSMUST00000158341 Gm22088 snoRNA Interval_160931 chr8 115211989 115212385 + 0 NA intron (ENSMUSG00000004637.15, intron 2 of 2) protein_coding-intron (ENSMUSG00000004637.15, intron 8 of 8) -159274 ENSMUSG00000088428.1 ENSMUSG00000088428 ENSMUST00000157803 Gm22556 rRNA Interval_73878 chr17 45160822 45161273 + 0 NA Intergenic Intergenic 3121 ENSMUSG00000117217.1 ENSMUSG00000117217 ENSMUST00000233124 Gm4766 processed_pseudogene Interval_99702 chr2 164400333 164401040 + 0 NA exon (ENSMUSG00000016995.17, exon 3 of 11) protein_coding-exon (ENSMUSG00000016995.17, exon 3 of 11) -2455 ENSMUSG00000017007.9 ENSMUSG00000017007 ENSMUST00000109356 Rbpjl protein_coding Interval_17536 chr10 77589357 77589731 + 0 NA exon (ENSMUSG00000009291.13, exon 1 of 4) protein_coding-exon (ENSMUSG00000009291.13, exon 1 of 4) 7821 ENSMUSG00000009291.13 ENSMUSG00000009291 ENSMUST00000167006 Pttg1ip protein_coding Interval_4703 chr1 77453917 77454197 + 0 NA intron (ENSMUSG00000026235.14, intron 2 of 15) protein_coding-intron (ENSMUSG00000026235.14, intron 3 of 17) 42711 ENSMUSG00000099141.1 ENSMUSG00000099141 ENSMUST00000184495 Mir6352 miRNA Interval_162469 chr8 129187086 129187388 + 0 NA Intergenic Intergenic 43121 ENSMUSG00000056018.14 ENSMUSG00000056018 ENSMUST00000189055 Ccdc7b protein_coding Interval_77144 chr17 86880130 86880724 + 0 NA Intergenic Intergenic -37982 ENSMUSG00000037689.6 ENSMUSG00000037689 ENSMUST00000202221 Tmem247 protein_coding Interval_158906 chr8 87863989 87864601 + 0 NA intron (ENSMUSG00000045333.15, intron 2 of 3) protein_coding-intron (ENSMUSG00000045333.15, intron 1 of 6) 89567 ENSMUSG00000045333.15 ENSMUSG00000045333 ENSMUST00000173092 Zfp423 protein_coding Interval_53445 chr14 57554223 57555500 + 0 NA intron (ENSMUSG00000021951.7, intron 3 of 4) protein_coding-intron (ENSMUSG00000021951.7, intron 3 of 4) 16751 ENSMUSG00000021951.7 ENSMUSG00000021951 ENSMUST00000225504 Eef1akmt1 protein_coding Interval_11337 chr1 181035161 181036205 + 0 NA Intergenic Intergenic 9405 ENSMUSG00000102858.1 ENSMUSG00000102858 ENSMUST00000193082 Gm37086 TEC Interval_29087 chr11 80234251 80235092 + 0 NA intron (ENSMUSG00000017686.17, intron 8 of 14) protein_coding-intron (ENSMUSG00000017686.17, intron 8 of 19) -20030 ENSMUSG00000017686.17 ENSMUSG00000017686 ENSMUST00000236882 Rhot1 protein_coding Interval_82644 chr18 75593739 75595511 + 0 NA intron (ENSMUSG00000052928.9, intron 6 of 11) protein_coding-intron (ENSMUSG00000052928.9, intron 6 of 11) 42648 ENSMUSG00000052928.9 ENSMUSG00000052928 ENSMUST00000235147 Ctif protein_coding Interval_91145 chr2 35453107 35453468 + 0 NA intron (ENSMUSG00000035778.17, intron 1 of 1) protein_coding-intron (ENSMUSG00000035778.17, intron 1 of 8) -15976 ENSMUSG00000106856.1 ENSMUSG00000106856 ENSMUST00000202132 Gm43761 TEC Interval_23537 chr11 23210706 23212530 + 0 NA Intergenic Intergenic -38712 ENSMUSG00000088495.1 ENSMUSG00000088495 ENSMUST00000157870 Gm24398 snoRNA Interval_3371 chr1 57520500 57521990 + 0 NA exon (ENSMUSG00000102685.1, exon 1 of 1) TEC-exon (ENSMUSG00000102685.1, exon 1 of 1) -1833 ENSMUSG00000101826.1 ENSMUSG00000101826 ENSMUST00000188636 Gm8581 processed_pseudogene Interval_166671 chr9 61748732 61749055 + 0 NA Intergenic Intergenic -14191 ENSMUSG00000111739.1 ENSMUSG00000111739 ENSMUST00000213572 Gm47241 processed_pseudogene Interval_57300 chr15 8600618 8600965 + 0 NA Intergenic Intergenic 54282 ENSMUSG00000103047.1 ENSMUSG00000103047 ENSMUST00000195237 Gm37310 TEC Interval_171648 chr9 119936972 119937939 + 0 NA promoter-TSS (ENSMUSG00000032514.11) protein_coding-promoter-TSS (ENSMUSG00000032514.11) -4603 ENSMUSG00000032513.8 ENSMUSG00000032513 ENSMUST00000213409 Gorasp1 protein_coding Interval_75594 chr17 69156411 69157728 + 0 NA intron (ENSMUSG00000024044.19, intron 1 of 19) protein_coding-intron (ENSMUSG00000024044.19, intron 1 of 21) 30069 ENSMUSG00000024044.19 ENSMUSG00000024044 ENSMUST00000223565 Epb41l3 protein_coding Interval_109542 chr3 144326917 144327630 + 0 NA Intergenic Intergenic 7059 ENSMUSG00000106266.1 ENSMUSG00000106266 ENSMUST00000198471 Gm43447 lincRNA Interval_20385 chr10 117223794 117225337 + 0 NA promoter-TSS (ENSMUSG00000020171.8) protein_coding-promoter-TSS (ENSMUSG00000020171.8) -24 ENSMUSG00000112462.1 ENSMUSG00000112462 ENSMUST00000218027 Gm48772 bidirectional_promoter_lncRNA Interval_94068 chr2 83627365 83627977 + 0 NA Intergenic Intergenic -28949 ENSMUSG00000027091.14 ENSMUSG00000027091 ENSMUST00000134789 Zc3h15 protein_coding Interval_56490 chr14 119123201 119124707 + 0 NA Intergenic Intergenic -14387 ENSMUSG00000053465.6 ENSMUSG00000053465 ENSMUST00000065904 Hs6st3 protein_coding Interval_77938 chr18 5932309 5932691 + 0 NA Intergenic Intergenic -12683 ENSMUSG00000117508.1 ENSMUSG00000117508 ENSMUST00000234953 Gm34804 lincRNA Interval_53030 chr14 53654841 53655461 + 0 NA Intergenic Intergenic 5747 ENSMUSG00000076848.3 ENSMUSG00000076848 ENSMUST00000103660 Trav15-2-dv6-2 TR_V_gene Interval_87355 chr19 47908780 47910048 + 0 NA intron (ENSMUSG00000117975.1, intron 2 of 2) protein_coding-intron (ENSMUSG00000044948.17, intron 1 of 13) 9836 ENSMUSG00000117975.1 ENSMUSG00000117975 ENSMUST00000237029 Itprip protein_coding Interval_99382 chr2 160478553 160478807 + 0 NA Intergenic Intergenic -104677 ENSMUSG00000078955.3 ENSMUSG00000078955 ENSMUST00000128681 Gm14222 sense_intronic Interval_101213 chr2 179536852 179537718 + 0 NA intron (ENSMUSG00000000305.12, intron 2 of 2) protein_coding-intron (ENSMUSG00000000305.12, intron 2 of 15) 76282 ENSMUSG00000083410.1 ENSMUSG00000083410 ENSMUST00000120800 Gm14300 processed_pseudogene Interval_27620 chr11 69084061 69084602 + 0 NA Intergenic Intergenic -4191 ENSMUSG00000020894.16 ENSMUSG00000020894 ENSMUST00000146847 Vamp2 protein_coding Interval_120290 chr4 145219459 145220017 + 0 NA exon (ENSMUSG00000028599.10, exon 9 of 10) protein_coding-exon (ENSMUSG00000028599.10, exon 9 of 10) 27132 ENSMUSG00000028599.10 ENSMUSG00000028599 ENSMUST00000143055 Tnfrsf1b protein_coding Interval_16279 chr10 61905799 61906899 + 0 NA intron (ENSMUSG00000058806.15, intron 5 of 40) protein_coding-intron (ENSMUSG00000058806.15, intron 5 of 33) -53275 ENSMUSG00000112574.1 ENSMUSG00000112574 ENSMUST00000218711 Gm5750 processed_pseudogene Interval_77077 chr17 86293023 86293786 + 0 NA intron (ENSMUSG00000045038.14, intron 1 of 14) protein_coding-intron (ENSMUSG00000045038.14, intron 2 of 15) -6226 ENSMUSG00000100738.1 ENSMUSG00000100738 ENSMUST00000191222 2010106C02Rik antisense Interval_60345 chr15 73058235 73059785 + 0 NA intron (ENSMUSG00000047921.17, intron 1 of 16) protein_coding-intron (ENSMUSG00000047921.17, intron 1 of 21) 2035 ENSMUSG00000047921.17 ENSMUSG00000047921 ENSMUST00000228960 Trappc9 protein_coding Interval_168027 chr9 75467749 75468789 + 0 NA promoter-TSS (ENSMUSG00000109032.1) transcribed_unprocessed_pseudogene-promoter-TSS (ENSMUSG00000109032.1) -14582 ENSMUSG00000109032.1 ENSMUSG00000109032 ENSMUST00000209180 Gm7972 transcribed_unprocessed_pseudogene Interval_43500 chr13 31958785 31959076 + 0 NA intron (ENSMUSG00000038372.14, intron 7 of 10) protein_coding-intron (ENSMUSG00000038372.14, intron 7 of 10) -12156 ENSMUSG00000113935.1 ENSMUSG00000113935 ENSMUST00000221737 Gm35732 antisense Interval_40087 chr12 101072789 101073403 + 0 NA intron (ENSMUSG00000041846.15, intron 1 of 3) protein_coding-intron (ENSMUSG00000041846.15, intron 1 of 14) -9355 ENSMUSG00000097121.2 ENSMUSG00000097121 ENSMUST00000220889 D130020L05Rik antisense Interval_112439 chr4 41283860 41284926 + 0 NA Intergenic Intergenic -18765 ENSMUSG00000065873.1 ENSMUSG00000065873 ENSMUST00000083939 n-R5s183 rRNA Interval_123710 chr5 34647540 34648230 + 0 NA promoter-TSS (ENSMUSG00000036693.12) protein_coding-promoter-TSS (ENSMUSG00000036693.12) -644 ENSMUSG00000036693.12 ENSMUSG00000036693 ENSMUST00000152393 Nop14 protein_coding Interval_172502 chrX 21720730 21720978 + 0 NA intron (ENSMUSG00000031089.7, intron 3 of 13) protein_coding-intron (ENSMUSG00000031089.7, intron 3 of 13) 4837 ENSMUSG00000088701.1 ENSMUSG00000088701 ENSMUST00000158076 Gm25553 rRNA Interval_127352 chr5 103360485 103361418 + 0 NA Intergenic Intergenic -4253 ENSMUSG00000104684.1 ENSMUSG00000104684 ENSMUST00000200007 5430427N15Rik lincRNA Interval_41789 chr12 119237615 119239227 + 0 NA exon (ENSMUSG00000025321.14, exon 1 of 14) protein_coding-exon (ENSMUSG00000025321.14, exon 1 of 14) 380 ENSMUSG00000025321.14 ENSMUSG00000025321 ENSMUST00000137804 Itgb8 protein_coding Interval_85760 chr19 30516511 30518118 + 0 NA Intergenic Intergenic 14615 ENSMUSG00000117953.1 ENSMUSG00000117953 ENSMUST00000237713 Gm50264 processed_pseudogene Interval_116511 chr4 114912884 114914042 + 0 NA exon (ENSMUSG00000085399.7, exon 2 of 4) processed_transcript-exon (ENSMUSG00000085399.7, exon 2 of 4) 4206 ENSMUSG00000085399.7 ENSMUSG00000085399 ENSMUST00000144002 Foxd2os processed_transcript Interval_139880 chr6 112302029 112303523 + 0 NA intron (ENSMUSG00000057604.9, intron 1 of 5) protein_coding-intron (ENSMUSG00000057604.9, intron 1 of 5) 9545 ENSMUSG00000107559.1 ENSMUSG00000107559 ENSMUST00000204822 Gm44193 TEC Interval_77308 chr17 87958428 87958735 + 0 NA Intergenic Intergenic 8654 ENSMUSG00000117455.1 ENSMUSG00000117455 ENSMUST00000234870 Gm50040 processed_pseudogene Interval_43284 chr13 28721010 28721560 + 0 NA intron (ENSMUSG00000085936.7, intron 2 of 5) processed_transcript-intron (ENSMUSG00000085936.7, intron 2 of 5) -10412 ENSMUSG00000099158.1 ENSMUSG00000099158 ENSMUST00000184136 Mir6368 miRNA Interval_67274 chr16 45250365 45250625 + 0 NA exon (ENSMUSG00000052013.15, exon 6 of 6) protein_coding-exon (ENSMUSG00000052013.15, exon 6 of 6) 124 ENSMUSG00000052013.15 ENSMUSG00000052013 ENSMUST00000231703 Btla protein_coding Interval_47213 chr13 78162902 78164106 + 0 NA intron (ENSMUSG00000114401.1, intron 1 of 1) protein_coding-intron (ENSMUSG00000064138.14, intron 9 of 9) -8126 ENSMUSG00000114649.1 ENSMUSG00000114649 ENSMUST00000225503 3110006O06Rik lincRNA Interval_81515 chr18 61313877 61314397 + 0 NA intron (ENSMUSG00000033871.14, intron 3 of 11) protein_coding-intron (ENSMUSG00000033871.14, intron 4 of 12) 39114 ENSMUSG00000024575.16 ENSMUSG00000024575 ENSMUST00000135688 Pde6a protein_coding Interval_92399 chr2 59533150 59534861 + 0 NA Intergenic Intergenic 30679 ENSMUSG00000081157.1 ENSMUSG00000081157 ENSMUST00000118837 Gm13552 processed_pseudogene Interval_74534 chr17 53087232 53088267 + 0 NA Intergenic Intergenic -108702 ENSMUSG00000117244.1 ENSMUSG00000117244 ENSMUST00000233156 Gm9210 processed_pseudogene Interval_46957 chr13 73732381 73733530 + 0 NA promoter-TSS (ENSMUSG00000017756.9) protein_coding-promoter-TSS (ENSMUSG00000017756.9) 29239 ENSMUSG00000021566.7 ENSMUSG00000021566 ENSMUST00000160958 Slc6a19os antisense Interval_108227 chr3 122628357 122628559 + 0 NA TTS (ENSMUSG00000106365.1) lincRNA-TTS (ENSMUSG00000106365.1) 1710 ENSMUSG00000106365.1 ENSMUSG00000106365 ENSMUST00000198427 Gm43568 lincRNA Interval_39900 chr12 99498346 99498596 + 0 NA intron (ENSMUSG00000033713.12, intron 1 of 2) protein_coding-intron (ENSMUSG00000033713.12, intron 1 of 2) 65065 ENSMUSG00000033713.12 ENSMUSG00000033713 ENSMUST00000221283 Foxn3 protein_coding Interval_104363 chr3 64181263 64181896 + 0 NA Intergenic Intergenic 18189 ENSMUSG00000093447.1 ENSMUSG00000093447 ENSMUST00000175943 Gm5139 processed_pseudogene Interval_90897 chr2 33320217 33320975 + 0 NA intron (ENSMUSG00000038831.16, intron 3 of 16) protein_coding-intron (ENSMUSG00000038831.16, intron 3 of 16) -2575 ENSMUSG00000082844.1 ENSMUSG00000082844 ENSMUST00000120467 Gm13537 processed_pseudogene Interval_110547 chr4 3817704 3817991 + 0 NA Intergenic Intergenic -9096 ENSMUSG00000055216.3 ENSMUSG00000055216 ENSMUST00000068663 9430025C20Rik pseudogene Interval_21771 chr11 4258503 4259202 + 0 NA intron (ENSMUSG00000034394.14, intron 1 of 3) protein_coding-intron (ENSMUSG00000034394.14, intron 1 of 3) -7944 ENSMUSG00000034394.14 ENSMUSG00000034394 ENSMUST00000040750 Lif protein_coding Interval_101284 chr2 180184424 180184943 + 0 NA intron (ENSMUSG00000015647.9, intron 51 of 78) protein_coding-intron (ENSMUSG00000015647.9, intron 51 of 78) -4860 ENSMUSG00000098735.1 ENSMUSG00000098735 ENSMUST00000185089 Mir7005 miRNA Interval_131438 chr5 137190761 137191522 + 0 NA Intergenic Intergenic -1974 ENSMUSG00000106190.1 ENSMUSG00000106190 ENSMUST00000199527 Gm20768 processed_pseudogene Interval_133974 chr6 17098306 17099554 + 0 NA intron (ENSMUSG00000054556.6, intron 2 of 2) protein_coding-intron (ENSMUSG00000029552.19, intron 6 of 8) 33770 ENSMUSG00000029552.19 ENSMUSG00000029552 ENSMUST00000076654 Tes protein_coding Interval_123220 chr5 30725682 30726537 + 0 NA intron (ENSMUSG00000029168.14, intron 1 of 12) protein_coding-intron (ENSMUSG00000029168.14, intron 1 of 12) -32923 ENSMUSG00000106173.1 ENSMUSG00000106173 ENSMUST00000197835 Gm42764 sense_intronic Interval_70057 chr17 5051829 5054464 + 0 NA intron (ENSMUSG00000069729.14, intron 2 of 19) protein_coding-intron (ENSMUSG00000069729.14, intron 2 of 18) 58207 ENSMUSG00000069729.14 ENSMUSG00000069729 ENSMUST00000146703 Arid1b protein_coding Interval_153982 chr8 11616440 11617054 + 0 NA intron (ENSMUSG00000031508.14, intron 2 of 3) protein_coding-intron (ENSMUSG00000031508.14, intron 4 of 5) 7879 ENSMUSG00000031508.14 ENSMUSG00000031508 ENSMUST00000210876 Ankrd10 protein_coding Interval_22208 chr11 7180462 7181118 + 0 NA Intergenic Intergenic 7779 ENSMUSG00000087512.2 ENSMUSG00000087512 ENSMUST00000122910 Ccdc201 protein_coding Interval_148819 chr7 88551157 88551669 + 0 NA Intergenic Intergenic -20515 ENSMUSG00000069972.6 ENSMUSG00000069972 ENSMUST00000182017 Rps13-ps2 processed_pseudogene Interval_8857 chr1 151579439 151580254 + 0 NA intron (ENSMUSG00000026483.13, intron 1 of 13) protein_coding-intron (ENSMUSG00000026483.13, intron 1 of 14) 8473 ENSMUSG00000026483.13 ENSMUSG00000026483 ENSMUST00000086267 Fam129a protein_coding Interval_16901 chr10 69645419 69646121 + 0 NA intron (ENSMUSG00000069601.14, intron 2 of 2) protein_coding-intron (ENSMUSG00000069601.14, intron 1 of 16) -79409 ENSMUSG00000112729.1 ENSMUSG00000112729 ENSMUST00000220152 Gm46231 processed_pseudogene Interval_44651 chr13 46928668 46931035 + 0 NA promoter-TSS (ENSMUSG00000021375.11) protein_coding-promoter-TSS (ENSMUSG00000021375.11) 15842 ENSMUSG00000114449.1 ENSMUSG00000114449 ENSMUST00000224563 Gm48325 processed_pseudogene Interval_107406 chr3 107342854 107344462 + 0 NA TTS (ENSMUSG00000105532.1) processed_pseudogene-TTS (ENSMUSG00000105532.1) 703 ENSMUSG00000105532.1 ENSMUSG00000105532 ENSMUST00000199575 Gm5279 processed_pseudogene Interval_109170 chr3 137530183 137530417 + 0 NA Intergenic Intergenic 22322 ENSMUSG00000055138.10 ENSMUSG00000055138 ENSMUST00000198629 Gm4861 lincRNA Interval_33654 chr11 117764185 117764523 + 0 NA TTS (ENSMUSG00000025571.13) protein_coding-TTS (ENSMUSG00000025571.13) 15123 ENSMUSG00000025571.13 ENSMUSG00000025571 ENSMUST00000141287 Tnrc6c protein_coding Interval_120197 chr4 144148747 144149154 + 0 NA Intergenic Intergenic 13713 ENSMUSG00000050810.8 ENSMUSG00000050810 ENSMUST00000050933 Oog3 protein_coding Interval_98804 chr2 155107312 155107533 + 0 NA Intergenic Intergenic -7341 ENSMUSG00000087254.1 ENSMUSG00000087254 ENSMUST00000142569 2310005A03Rik lincRNA Interval_103246 chr3 37441798 37442006 + 0 NA intron (ENSMUSG00000027722.14, intron 9 of 16) protein_coding-intron (ENSMUSG00000027722.14, intron 9 of 15) -22345 ENSMUSG00000050174.15 ENSMUSG00000050174 ENSMUST00000138949 Nudt6 protein_coding Interval_159855 chr8 104376342 104377074 + 0 NA intron (ENSMUSG00000096188.1, intron 1 of 3) protein_coding-intron (ENSMUSG00000096188.1, intron 1 of 3) -13040 ENSMUSG00000110486.1 ENSMUSG00000110486 ENSMUST00000212110 Gm45877 sense_intronic Interval_55444 chr14 87391411 87391910 + 0 NA Intergenic Intergenic -36690 ENSMUSG00000115564.1 ENSMUSG00000115564 ENSMUST00000226140 Gm49199 TEC Interval_101488 chr2 181854822 181855339 + 0 NA exon (ENSMUSG00000027589.14, exon 7 of 7) protein_coding-exon (ENSMUSG00000027589.14, exon 7 of 7) -9280 ENSMUSG00000038628.8 ENSMUSG00000038628 ENSMUST00000153214 Polr3k protein_coding Interval_75197 chr17 64575224 64575733 + 0 NA Intergenic Intergenic -19818 ENSMUSG00000073377.9 ENSMUSG00000073377 ENSMUST00000168379 AU016765 lincRNA Interval_30067 chr11 88981483 88982623 + 0 NA exon (ENSMUSG00000033983.14, exon 2 of 7) protein_coding-exon (ENSMUSG00000033983.14, exon 2 of 7) -5526 ENSMUSG00000033983.14 ENSMUSG00000033983 ENSMUST00000140549 Coil protein_coding Interval_58073 chr15 27640890 27641330 + 0 NA Intergenic Intergenic 4599 ENSMUSG00000115578.1 ENSMUSG00000115578 ENSMUST00000227140 Gm46506 processed_pseudogene Interval_129146 chr5 117823506 117824820 + 0 NA intron (ENSMUSG00000029361.18, intron 1 of 3) protein_coding-intron (ENSMUSG00000029361.18, intron 1 of 3) -42956 ENSMUSG00000029361.18 ENSMUSG00000029361 ENSMUST00000138554 Nos1 protein_coding Interval_111702 chr4 26353511 26354906 + 0 NA Intergenic Intergenic -7317 ENSMUSG00000040520.7 ENSMUSG00000040520 ENSMUST00000153813 Manea protein_coding Interval_73632 chr17 41833721 41833960 + 0 NA Intergenic Intergenic -170152 ENSMUSG00000117001.1 ENSMUSG00000117001 ENSMUST00000232972 Gm49858 processed_pseudogene Interval_74695 chr17 56007142 56009704 + 0 NA promoter-TSS (ENSMUSG00000003199.16) protein_coding-promoter-TSS (ENSMUSG00000003199.16) -785 ENSMUSG00000003199.16 ENSMUSG00000003199 ENSMUST00000159420 Mpnd protein_coding Interval_164719 chr9 40792417 40792733 + 0 NA Intergenic Intergenic -8394 ENSMUSG00000087135.7 ENSMUSG00000087135 ENSMUST00000132716 Gm16096 processed_transcript Interval_8023 chr1 135258246 135259434 + 0 NA promoter-TSS (ENSMUSG00000003051.13) protein_coding-promoter-TSS (ENSMUSG00000003051.13) -1191 ENSMUSG00000003051.13 ENSMUSG00000003051 ENSMUST00000188895 Elf3 protein_coding Interval_36657 chr12 51802423 51802686 + 0 NA exon (ENSMUSG00000035247.16, exon 5 of 43) protein_coding-exon (ENSMUSG00000035247.16, exon 5 of 43) -19973 ENSMUSG00000035247.16 ENSMUSG00000035247 ENSMUST00000217804 Hectd1 protein_coding Interval_17071 chr10 71120370 71120817 + 0 NA intron (ENSMUSG00000014329.14, intron 1 of 20) protein_coding-intron (ENSMUSG00000014329.14, intron 1 of 21) -27567 ENSMUSG00000112566.1 ENSMUSG00000112566 ENSMUST00000217960 Gm32025 processed_pseudogene Interval_156594 chr8 53872256 53872806 + 0 NA Intergenic Intergenic -39208 ENSMUSG00000110334.1 ENSMUSG00000110334 ENSMUST00000210505 Gm19921 processed_pseudogene Interval_53289 chr14 55814659 55816124 + 0 NA Intergenic Intergenic -14078 ENSMUSG00000023411.12 ENSMUSG00000023411 ENSMUST00000226869 Nfatc4 protein_coding Interval_19762 chr10 108557526 108557786 + 0 NA intron (ENSMUSG00000035864.14, intron 10 of 11) protein_coding-intron (ENSMUSG00000035864.14, intron 9 of 10) 75006 ENSMUSG00000112065.1 ENSMUSG00000112065 ENSMUST00000217917 Gm47466 processed_pseudogene Interval_116447 chr4 112313675 112314243 + 0 NA Intergenic Intergenic 81714 ENSMUSG00000070868.11 ENSMUSG00000070868 ENSMUST00000170945 Skint3 protein_coding Interval_51020 chr14 21625321 21625834 + 0 NA promoter-TSS (ENSMUSG00000021767.19) protein_coding-promoter-TSS (ENSMUSG00000021767.19) 77525 ENSMUSG00000063821.6 ENSMUSG00000063821 ENSMUST00000224735 Dupd1 protein_coding Interval_43941 chr13 38199094 38199663 + 0 NA TTS (ENSMUSG00000054889.10) protein_coding-TTS (ENSMUSG00000054889.10) -16558 ENSMUSG00000021431.15 ENSMUSG00000021431 ENSMUST00000223893 Snrnp48 protein_coding Interval_79053 chr18 24185222 24186845 + 0 NA Intergenic Intergenic -46564 ENSMUSG00000000420.15 ENSMUSG00000000420 ENSMUST00000170191 Galnt1 protein_coding Interval_93419 chr2 72948834 72949159 + 0 NA intron (ENSMUSG00000027109.16, intron 1 of 1) protein_coding-intron (ENSMUSG00000027109.16, intron 3 of 5) 1991 ENSMUSG00000092851.1 ENSMUSG00000092851 ENSMUST00000175110 Gm25960 miRNA Interval_44285 chr13 43343876 43344187 + 0 NA Intergenic Intergenic -21475 ENSMUSG00000054021.6 ENSMUSG00000054021 ENSMUST00000222106 Sirt5 protein_coding Interval_82978 chr18 80125315 80125490 + 0 NA TTS (ENSMUSG00000053950.10) protein_coding-TTS (ENSMUSG00000053950.10) 26080 ENSMUSG00000053950.10 ENSMUSG00000053950 ENSMUST00000066743 Adnp2 protein_coding Interval_60086 chr15 64969819 64970091 + 0 NA Intergenic Intergenic 44949 ENSMUSG00000079024.2 ENSMUSG00000079024 ENSMUST00000110100 Gm21961 protein_coding Interval_163591 chr9 22379433 22379624 + 0 NA intron (ENSMUSG00000036777.8, intron 3 of 23) protein_coding-intron (ENSMUSG00000036777.8, intron 3 of 23) -7749 ENSMUSG00000111069.1 ENSMUSG00000111069 ENSMUST00000214468 Gm48646 sense_intronic Interval_50041 chr13 120149759 120150009 + 0 NA TTS (ENSMUSG00000114798.1) processed_pseudogene-TTS (ENSMUSG00000114798.1) 505 ENSMUSG00000114798.1 ENSMUSG00000114798 ENSMUST00000224202 Gm20769 processed_pseudogene Interval_125324 chr5 66202463 66203188 + 0 NA Intergenic Intergenic -1499 ENSMUSG00000084108.2 ENSMUSG00000084108 ENSMUST00000120182 Gm15794 processed_pseudogene Interval_41341 chr12 112941591 112942532 + 0 NA promoter-TSS (ENSMUSG00000002804.4) protein_coding-promoter-TSS (ENSMUSG00000002804.4) -3057 ENSMUSG00000002804.4 ENSMUSG00000002804 ENSMUST00000221497 Nudt14 protein_coding Interval_145265 chr7 31041544 31042553 + 0 NA promoter-TSS (ENSMUSG00000009687.14) protein_coding-promoter-TSS (ENSMUSG00000009687.14) -1731 ENSMUSG00000098783.1 ENSMUSG00000098783 ENSMUST00000184636 Mir7050 miRNA Interval_49527 chr13 112734493 112736017 + 0 NA promoter-TSS (ENSMUSG00000047789.5) protein_coding-promoter-TSS (ENSMUSG00000047789.5) -355 ENSMUSG00000047789.5 ENSMUSG00000047789 ENSMUST00000225649 Slc38a9 protein_coding Interval_129198 chr5 118137558 118137953 + 0 NA intron (ENSMUSG00000032867.8, intron 2 of 7) protein_coding-intron (ENSMUSG00000032867.8, intron 2 of 10) 11139 ENSMUSG00000088293.1 ENSMUSG00000088293 ENSMUST00000157668 Gm26411 snRNA Interval_163691 chr9 24452324 24453325 + 0 NA intron (ENSMUSG00000043067.15, intron 8 of 21) protein_coding-intron (ENSMUSG00000043067.15, intron 9 of 22) 50316 ENSMUSG00000043067.15 ENSMUSG00000043067 ENSMUST00000129048 Dpy19l1 protein_coding Interval_160791 chr8 112329430 112330763 + 0 NA Intergenic Intergenic -93130 ENSMUSG00000110435.1 ENSMUSG00000110435 ENSMUST00000212314 Gm3635 processed_pseudogene Interval_63305 chr15 100219140 100220774 + 0 NA TTS (ENSMUSG00000023026.16) protein_coding-TTS (ENSMUSG00000023026.16) -12241 ENSMUSG00000023027.13 ENSMUSG00000023027 ENSMUST00000166435 Atf1 protein_coding Interval_142562 chr6 143288612 143289667 + 0 NA intron (ENSMUSG00000072679.10, intron 1 of 1) lincRNA-intron (ENSMUSG00000072679.10, intron 3 of 3) 43246 ENSMUSG00000072679.10 ENSMUSG00000072679 ENSMUST00000160951 D6Ertd474e lincRNA Interval_151223 chr7 119835432 119836005 + 0 NA intron (ENSMUSG00000030924.16, intron 12 of 12) protein_coding-intron (ENSMUSG00000030924.16, intron 12 of 12) -8147 ENSMUSG00000030924.16 ENSMUSG00000030924 ENSMUST00000151248 Rexo5 protein_coding Interval_32820 chr11 111082482 111083307 + 0 NA Intergenic Intergenic 16730 ENSMUSG00000041695.2 ENSMUSG00000041695 ENSMUST00000042970 Kcnj2 protein_coding Interval_138627 chr6 90532585 90533705 + 0 NA intron (ENSMUSG00000030088.15, intron 1 of 2) protein_coding-intron (ENSMUSG00000030088.15, intron 1 of 2) -17703 ENSMUSG00000030088.15 ENSMUSG00000030088 ENSMUST00000137669 Aldh1l1 protein_coding Interval_33205 chr11 115215345 115215792 + 0 NA intron (ENSMUSG00000045980.13, intron 8 of 8) protein_coding-intron (ENSMUSG00000045980.13, intron 8 of 9) 28017 ENSMUSG00000045980.13 ENSMUSG00000045980 ENSMUST00000156230 Tmem104 protein_coding Interval_129655 chr5 121560675 121561318 + 0 NA Intergenic Intergenic 11842 ENSMUSG00000029455.14 ENSMUSG00000029455 ENSMUST00000152945 Aldh2 protein_coding Interval_159190 chr8 91494718 91496443 + 0 NA TTS (ENSMUSG00000109642.1) TEC-TTS (ENSMUSG00000109642.1) 2561 ENSMUSG00000109642.1 ENSMUSG00000109642 ENSMUST00000211048 Gm45289 TEC Interval_18861 chr10 91416721 91417363 + 0 NA Intergenic Intergenic -6312 ENSMUSG00000111591.1 ENSMUSG00000111591 ENSMUST00000215290 Gm47083 processed_pseudogene Interval_51182 chr14 24510366 24510828 + 0 NA Intergenic Intergenic 19879 ENSMUSG00000025290.17 ENSMUSG00000025290 ENSMUST00000224699 Rps24 protein_coding Interval_159961 chr8 105438963 105439191 + 0 NA intron (ENSMUSG00000054320.16, intron 5 of 13) protein_coding-intron (ENSMUSG00000054320.16, intron 2 of 10) 25449 ENSMUSG00000054320.16 ENSMUSG00000054320 ENSMUST00000216457 Lrrc36 protein_coding Interval_50848 chr14 20190216 20190422 + 0 NA Intergenic Intergenic 9635 ENSMUSG00000114523.1 ENSMUSG00000114523 ENSMUST00000225224 Gm48394 processed_pseudogene Interval_65642 chr16 24565811 24567329 + 0 NA intron (ENSMUSG00000033306.15, intron 4 of 6) protein_coding-intron (ENSMUSG00000033306.15, intron 4 of 12) 37176 ENSMUSG00000116875.1 ENSMUSG00000116875 ENSMUST00000231737 Morf4l1-ps1 processed_pseudogene Interval_60183 chr15 67062122 67063398 + 0 NA Intergenic Intergenic 22702 ENSMUSG00000116289.1 ENSMUSG00000116289 ENSMUST00000230911 Gm31342 lincRNA Interval_122004 chr5 13694676 13696271 + 0 NA Intergenic Intergenic -68145 ENSMUSG00000105833.1 ENSMUSG00000105833 ENSMUST00000200620 Gm4751 processed_pseudogene Interval_101373 chr2 180875032 180875729 + 0 NA intron (ENSMUSG00000086166.1, intron 1 of 3) lincRNA-intron (ENSMUSG00000086166.1, intron 1 of 3) 14280 ENSMUSG00000086166.1 ENSMUSG00000086166 ENSMUST00000137629 Gm14342 lincRNA Interval_65299 chr16 21339558 21340583 + 0 NA Intergenic Intergenic -6941 ENSMUSG00000116632.1 ENSMUSG00000116632 ENSMUST00000231972 Magef1 transcribed_processed_pseudogene Interval_132004 chr5 142188220 142189163 + 0 NA intron (ENSMUSG00000039683.16, intron 42 of 44) protein_coding-intron (ENSMUSG00000039683.16, intron 38 of 40) -94415 ENSMUSG00000097947.1 ENSMUSG00000097947 ENSMUST00000182990 Gm26970 processed_pseudogene Interval_25720 chr11 51096921 51097677 + 0 NA Intergenic Intergenic -9332 ENSMUSG00000083156.1 ENSMUSG00000083156 ENSMUST00000120657 Gm12201 processed_pseudogene Interval_104551 chr3 67753056 67753835 + 0 NA Intergenic Intergenic -10148 ENSMUSG00000104477.1 ENSMUSG00000104477 ENSMUST00000192744 Gm18717 processed_pseudogene Interval_43673 chr13 34861430 34861635 + 0 NA Intergenic Intergenic 5045 ENSMUSG00000114127.1 ENSMUSG00000114127 ENSMUST00000221617 Gm8231 processed_pseudogene Interval_39840 chr12 98937093 98937471 + 0 NA intron (ENSMUSG00000021013.16, intron 2 of 8) protein_coding-intron (ENSMUSG00000021013.16, intron 2 of 14) -6221 ENSMUSG00000021013.16 ENSMUSG00000021013 ENSMUST00000139298 Ttc8 protein_coding Interval_72923 chr17 33531332 33531780 + 0 NA promoter-TSS (ENSMUSG00000024299.17) protein_coding-promoter-TSS (ENSMUSG00000024299.17) 7346 ENSMUSG00000024299.17 ENSMUSG00000024299 ENSMUST00000174666 Adamts10 protein_coding Interval_70235 chr17 7153346 7154256 + 0 NA Intergenic Intergenic -16326 ENSMUSG00000023809.10 ENSMUSG00000023809 ENSMUST00000231530 Rps6ka2 protein_coding Interval_2938 chr1 51333335 51334587 + 0 NA promoter-TSS (ENSMUSG00000101799.1) antisense-promoter-TSS (ENSMUSG00000101799.1) -182 ENSMUSG00000101799.1 ENSMUSG00000101799 ENSMUST00000189867 9330175M20Rik antisense Interval_107776 chr3 113900774 113901321 + 0 NA Intergenic Intergenic 46311 ENSMUSG00000106084.1 ENSMUSG00000106084 ENSMUST00000197877 Gm18163 processed_pseudogene Interval_115226 chr4 94597612 94598177 + 0 NA intron (ENSMUSG00000028577.13, intron 1 of 1) protein_coding-intron (ENSMUSG00000028577.13, intron 1 of 13) -1491 ENSMUSG00000063314.5 ENSMUSG00000063314 ENSMUST00000119560 Gm12657 processed_pseudogene Interval_71307 chr17 22057526 22057932 + 0 NA intron (ENSMUSG00000053347.15, intron 5 of 5) protein_coding-intron (ENSMUSG00000053347.15, intron 5 of 5) 12159 ENSMUSG00000117234.1 ENSMUSG00000117234 ENSMUST00000232840 Gm7818 processed_pseudogene Interval_83849 chr19 5081846 5083029 + 0 NA TTS (ENSMUSG00000061451.13) protein_coding-TTS (ENSMUSG00000061451.13) 3050 ENSMUSG00000061451.13 ENSMUSG00000061451 ENSMUST00000136372 Tmem151a protein_coding Interval_128639 chr5 114442903 114444702 + 0 NA promoter-TSS (ENSMUSG00000041939.14) protein_coding-promoter-TSS (ENSMUSG00000041939.14) 190 ENSMUSG00000029575.17 ENSMUSG00000029575 ENSMUST00000123256 Mmab protein_coding Interval_11256 chr1 180506193 180506634 + 0 NA Intergenic Intergenic 13314 ENSMUSG00000102608.1 ENSMUSG00000102608 ENSMUST00000194222 Gm37267 lincRNA Interval_155025 chr8 25784650 25786013 + 0 NA promoter-TSS (ENSMUSG00000037296.7) protein_coding-promoter-TSS (ENSMUSG00000037296.7) -256 ENSMUSG00000037296.7 ENSMUSG00000037296 ENSMUST00000211670 Lsm1 protein_coding Interval_127339 chr5 103191113 103192296 + 0 NA intron (ENSMUSG00000046709.18, intron 2 of 2) protein_coding-intron (ENSMUSG00000046709.18, intron 2 of 13) 19630 ENSMUSG00000046709.18 ENSMUSG00000046709 ENSMUST00000136595 Mapk10 protein_coding Interval_132683 chr5 147133214 147133950 + 0 NA Intergenic Intergenic -32529 ENSMUSG00000083988.1 ENSMUSG00000083988 ENSMUST00000120308 Rps10-ps4 processed_pseudogene Interval_125393 chr5 66655672 66656254 + 0 NA intron (ENSMUSG00000087601.3, intron 3 of 3) antisense-intron (ENSMUSG00000087601.3, intron 1 of 4) 20070 ENSMUSG00000087601.3 ENSMUSG00000087601 ENSMUST00000177319 Uchl1os antisense Interval_87106 chr19 46147591 46148870 + 0 NA promoter-TSS (ENSMUSG00000025229.15) protein_coding-promoter-TSS (ENSMUSG00000025229.15) -4350 ENSMUSG00000025224.16 ENSMUSG00000025224 ENSMUST00000176046 Gbf1 protein_coding Interval_44758 chr13 48310152 48310549 + 0 NA Intergenic Intergenic -2320 ENSMUSG00000114881.1 ENSMUSG00000114881 ENSMUST00000225756 Gm8588 processed_pseudogene Interval_78884 chr18 21132595 21133498 + 0 NA intron (ENSMUSG00000042680.8, intron 4 of 4) protein_coding-intron (ENSMUSG00000042680.8, intron 4 of 5) -55937 ENSMUSG00000062962.5 ENSMUSG00000062962 ENSMUST00000084199 Gm6378 processed_pseudogene Interval_38319 chr12 77142383 77144059 + 0 NA Intergenic Intergenic -26789 ENSMUSG00000093114.1 ENSMUSG00000093114 ENSMUST00000175373 Gm22696 miRNA Interval_108690 chr3 130172978 130173362 + 0 NA intron (ENSMUSG00000058897.18, intron 5 of 5) protein_coding-intron (ENSMUSG00000058897.18, intron 5 of 5) -8314 ENSMUSG00000058897.18 ENSMUSG00000058897 ENSMUST00000198205 Col25a1 protein_coding Interval_11817 chr1 185726686 185727203 + 0 NA Intergenic Intergenic -17859 ENSMUSG00000103799.1 ENSMUSG00000103799 ENSMUST00000195210 Gm38093 lincRNA Interval_24210 chr11 31518947 31519370 + 0 NA Intergenic Intergenic -149111 ENSMUSG00000020303.2 ENSMUSG00000020303 ENSMUST00000134199 Stc2 protein_coding Interval_8182 chr1 136305942 136307214 + 0 NA intron (ENSMUSG00000041570.14, intron 2 of 17) protein_coding-intron (ENSMUSG00000041570.14, intron 2 of 18) -24828 ENSMUSG00000041570.14 ENSMUSG00000041570 ENSMUST00000194730 Camsap2 protein_coding Interval_34127 chr11 120789733 120790144 + 0 NA promoter-TSS (ENSMUSG00000025155.15) protein_coding-promoter-TSS (ENSMUSG00000025155.15) 5653 ENSMUSG00000025156.17 ENSMUSG00000025156 ENSMUST00000156723 Gps1 protein_coding Interval_54288 chr14 67183380 67184359 + 0 NA intron (ENSMUSG00000114697.1, intron 2 of 6) lincRNA-intron (ENSMUSG00000114697.1, intron 2 of 6) 14281 ENSMUSG00000114697.1 ENSMUSG00000114697 ENSMUST00000225163 Gm30806 lincRNA Interval_156526 chr8 49547020 49547224 + 0 NA intron (ENSMUSG00000031559.15, intron 9 of 9) lincRNA-intron (ENSMUSG00000031559.15, intron 9 of 9) 25698 ENSMUSG00000110688.1 ENSMUSG00000110688 ENSMUST00000212088 Gm45696 TEC Interval_58501 chr15 35266088 35266420 + 0 NA intron (ENSMUSG00000115345.1, intron 3 of 4) lincRNA-intron (ENSMUSG00000115345.1, intron 3 of 4) -29857 ENSMUSG00000022330.5 ENSMUSG00000022330 ENSMUST00000228152 Osr2 protein_coding Interval_174296 chrX 144266074 144267240 + 0 NA Intergenic Intergenic 1547 ENSMUSG00000081897.1 ENSMUSG00000081897 ENSMUST00000119534 Gm15067 processed_pseudogene Interval_75510 chr17 67655444 67655867 + 0 NA Intergenic Intergenic -22932 ENSMUSG00000073375.3 ENSMUSG00000073375 ENSMUST00000097290 Lrrc30 protein_coding Interval_130763 chr5 130243390 130244262 + 0 NA TTS (ENSMUSG00000053094.15) protein_coding-TTS (ENSMUSG00000053094.15) 11652 ENSMUSG00000025337.10 ENSMUSG00000025337 ENSMUST00000201598 Sbds protein_coding Interval_167432 chr9 69289263 69291235 + 0 NA intron (ENSMUSG00000032238.17, intron 1 of 9) protein_coding-intron (ENSMUSG00000032238.17, intron 2 of 10) 73998 ENSMUSG00000086648.1 ENSMUSG00000086648 ENSMUST00000152570 Gm15511 antisense Interval_97603 chr2 140356615 140357052 + 0 NA intron (ENSMUSG00000074764.11, intron 1 of 19) protein_coding-intron (ENSMUSG00000074764.11, intron 1 of 3) -60005 ENSMUSG00000074764.11 ENSMUSG00000074764 ENSMUST00000120133 Sel1l2 protein_coding Interval_97128 chr2 131491485 131492734 + 0 NA promoter-TSS (ENSMUSG00000027333.18) protein_coding-promoter-TSS (ENSMUSG00000027333.18) 166 ENSMUSG00000027333.18 ENSMUSG00000027333 ENSMUST00000151143 Smox protein_coding Interval_2935 chr1 51273343 51274199 + 0 NA intron (ENSMUSG00000101799.1, intron 2 of 4) antisense-intron (ENSMUSG00000101799.1, intron 2 of 4) -15355 ENSMUSG00000045954.7 ENSMUSG00000045954 ENSMUST00000051572 Cavin2 protein_coding Interval_174431 chrX 152240930 152241668 + 0 NA intron (ENSMUSG00000025332.14, intron 4 of 6) protein_coding-intron (ENSMUSG00000025332.14, intron 3 of 24) -28507 ENSMUSG00000025332.14 ENSMUSG00000025332 ENSMUST00000155793 Kdm5c protein_coding Interval_82913 chr18 79008542 79010612 + 0 NA intron (ENSMUSG00000024548.11, intron 2 of 5) protein_coding-intron (ENSMUSG00000024548.11, intron 2 of 5) 99814 ENSMUSG00000024548.11 ENSMUSG00000024548 ENSMUST00000025430 Setbp1 protein_coding Interval_166858 chr9 63294304 63295053 + 0 NA intron (ENSMUSG00000058444.8, intron 1 of 10) protein_coding-intron (ENSMUSG00000058444.8, intron 9 of 21) 83199 ENSMUSG00000058444.8 ENSMUSG00000058444 ENSMUST00000216999 Map2k5 protein_coding Interval_133103 chr5 149830764 149831994 + 0 NA Intergenic Intergenic -16368 ENSMUSG00000107214.3 ENSMUSG00000107214 ENSMUST00000200855 4930500F04Rik processed_transcript Interval_162465 chr8 129138270 129138504 + 0 NA intron (ENSMUSG00000056018.14, intron 2 of 5) protein_coding-intron (ENSMUSG00000056018.14, intron 8 of 14) -5729 ENSMUSG00000056018.14 ENSMUSG00000056018 ENSMUST00000189055 Ccdc7b protein_coding Interval_119387 chr4 137392824 137393261 + 0 NA Intergenic Intergenic -2257 ENSMUSG00000070667.7 ENSMUSG00000070667 ENSMUST00000116034 Rpl31-ps10 processed_pseudogene Interval_167168 chr9 65776388 65777218 + 0 NA intron (ENSMUSG00000040524.9, intron 2 of 9) protein_coding-intron (ENSMUSG00000040524.9, intron 2 of 9) 21109 ENSMUSG00000040524.9 ENSMUSG00000040524 ENSMUST00000160747 Zfp609 protein_coding Interval_52682 chr14 48549899 48550707 + 0 NA intron (ENSMUSG00000115725.1, intron 1 of 4) lincRNA-intron (ENSMUSG00000115725.1, intron 1 of 1) 12312 ENSMUSG00000115725.1 ENSMUSG00000115725 ENSMUST00000227361 4930572G02Rik lincRNA Interval_43595 chr13 33970073 33971000 + 0 NA TTS (ENSMUSG00000060147.15) protein_coding-TTS (ENSMUSG00000060147.15) 5530 ENSMUSG00000046949.16 ENSMUSG00000046949 ENSMUST00000222740 Nqo2 protein_coding Interval_52923 chr14 52079027 52080117 + 0 NA intron (ENSMUSG00000060373.15, intron 5 of 8) protein_coding-intron (ENSMUSG00000060373.15, intron 5 of 8) -7645 ENSMUSG00000115541.1 ENSMUSG00000115541 ENSMUST00000227288 Gm49258 processed_pseudogene Interval_9890 chr1 163847619 163847863 + 0 NA intron (ENSMUSG00000026585.13, intron 10 of 20) protein_coding-intron (ENSMUSG00000026585.13, intron 10 of 19) 68158 ENSMUSG00000026585.13 ENSMUSG00000026585 ENSMUST00000027877 Kifap3 protein_coding Interval_172399 chrX 17721985 17722548 + 0 NA Intergenic Intergenic -45982 ENSMUSG00000081614.1 ENSMUSG00000081614 ENSMUST00000120949 Gm9436 processed_pseudogene Interval_90772 chr2 32516584 32517091 + 0 NA Intergenic Intergenic -8194 ENSMUSG00000085017.1 ENSMUSG00000085017 ENSMUST00000150621 Gm13412 lincRNA Interval_72936 chr17 33649226 33650389 + 0 NA promoter-TSS (ENSMUSG00000059208.15) protein_coding-promoter-TSS (ENSMUSG00000059208.15) 4990 ENSMUSG00000032739.16 ENSMUSG00000032739 ENSMUST00000166215 Pram1 protein_coding Interval_171338 chr9 116502708 116502995 + 0 NA Intergenic Intergenic 171683 ENSMUSG00000110752.1 ENSMUSG00000110752 ENSMUST00000217456 D730003K21Rik lincRNA Interval_148038 chr7 78653667 78653857 + 0 NA intron (ENSMUSG00000059146.12, intron 6 of 7) protein_coding-intron (ENSMUSG00000059146.12, intron 1 of 2) 74932 ENSMUSG00000052629.5 ENSMUSG00000052629 ENSMUST00000186234 Gm9885 antisense Interval_43418 chr13 30544569 30545617 + 0 NA exon (ENSMUSG00000038462.3, exon 1 of 2) protein_coding-exon (ENSMUSG00000038462.3, exon 1 of 2) 269 ENSMUSG00000038462.3 ENSMUSG00000038462 ENSMUST00000042834 Uqcrfs1 protein_coding Interval_19914 chr10 111180191 111181061 + 0 NA exon (ENSMUSG00000112642.1, exon 1 of 1) processed_pseudogene-exon (ENSMUSG00000112642.1, exon 1 of 1) 674 ENSMUSG00000112642.1 ENSMUSG00000112642 ENSMUST00000219788 Gm17849 processed_pseudogene Interval_72855 chr17 32695191 32695365 + 0 NA exon (ENSMUSG00000073424.9, exon 6 of 13) protein_coding-exon (ENSMUSG00000073424.9, exon 6 of 13) 9651 ENSMUSG00000073424.9 ENSMUSG00000073424 ENSMUST00000008801 Cyp4f15 protein_coding Interval_155840 chr8 40080473 40081605 + 0 NA Intergenic Intergenic 64325 ENSMUSG00000109815.1 ENSMUSG00000109815 ENSMUST00000209880 Gm7082 processed_pseudogene Interval_25384 chr11 47065922 47066345 + 0 NA intron (ENSMUSG00000020354.15, intron 6 of 7) protein_coding-intron (ENSMUSG00000020354.15, intron 6 of 7) 191720 ENSMUSG00000082818.1 ENSMUSG00000082818 ENSMUST00000122081 Gm12175 processed_pseudogene Interval_61196 chr15 79914068 79915691 + 0 NA TTS (ENSMUSG00000053411.16) protein_coding-TTS (ENSMUSG00000053411.16) 14537 ENSMUSG00000009585.18 ENSMUSG00000009585 ENSMUST00000175827 Apobec3 protein_coding Interval_50190 chr14 9031349 9031703 + 0 NA Intergenic Intergenic -105346 ENSMUSG00000114464.1 ENSMUSG00000114464 ENSMUST00000225474 Gm18071 processed_pseudogene Interval_90448 chr2 30510314 30511111 + 0 NA Intergenic Intergenic -24017 ENSMUSG00000085275.1 ENSMUSG00000085275 ENSMUST00000145413 Gm14487 lincRNA Interval_144366 chr7 24697362 24697828 + 0 NA Intergenic Intergenic 9022 ENSMUSG00000108430.1 ENSMUSG00000108430 ENSMUST00000207006 Gm36776 processed_pseudogene Interval_111758 chr4 27622186 27622595 + 0 NA Intergenic Intergenic -78281 ENSMUSG00000095003.1 ENSMUSG00000095003 ENSMUST00000179794 Gm25173 snRNA Interval_149750 chr7 101166490 101167446 + 0 NA intron (ENSMUSG00000030691.15, intron 3 of 6) protein_coding-intron (ENSMUSG00000030691.15, intron 3 of 20) -11913 ENSMUSG00000083121.3 ENSMUSG00000083121 ENSMUST00000119683 Gm6341 processed_pseudogene Interval_146641 chr7 49023615 49023954 + 0 NA intron (ENSMUSG00000052512.17, intron 2 of 39) protein_coding-intron (ENSMUSG00000052512.17, intron 2 of 39) 38797 ENSMUSG00000109068.1 ENSMUSG00000109068 ENSMUST00000207469 Gm45207 processed_pseudogene Interval_143006 chr6 148302270 148302581 + 0 NA intron (ENSMUSG00000030306.14, intron 9 of 16) protein_coding-intron (ENSMUSG00000030306.14, intron 9 of 19) 41275 ENSMUSG00000082199.1 ENSMUSG00000082199 ENSMUST00000120136 Gm15763 processed_pseudogene Interval_124901 chr5 59921653 59922467 + 0 NA Intergenic Intergenic 34080 ENSMUSG00000104563.1 ENSMUSG00000104563 ENSMUST00000200022 Gm43041 TEC Interval_85070 chr19 22109392 22110614 + 0 NA Intergenic Intergenic 112672 ENSMUSG00000118226.1 ENSMUSG00000118226 ENSMUST00000237916 Gm50134 lincRNA Interval_136613 chr6 56691181 56691919 + 0 NA Intergenic Intergenic 13160 ENSMUSG00000091625.8 ENSMUSG00000091625 ENSMUST00000176595 Lsm5 protein_coding Interval_130803 chr5 130773381 130773655 + 0 NA intron (ENSMUSG00000060371.12, intron 4 of 5) protein_coding-intron (ENSMUSG00000060371.12, intron 5 of 6) -9183 ENSMUSG00000088972.2 ENSMUSG00000088972 ENSMUST00000158347 Gm23761 snRNA Interval_79483 chr18 32261123 32261399 + 0 NA intron (ENSMUSG00000024382.13, intron 1 of 3) protein_coding-intron (ENSMUSG00000024382.13, intron 10 of 14) 20907 ENSMUSG00000024382.13 ENSMUSG00000024382 ENSMUST00000129023 Ercc3 protein_coding Interval_165469 chr9 48487161 48487395 + 0 NA Intergenic Intergenic -6688 ENSMUSG00000032026.7 ENSMUSG00000032026 ENSMUST00000214161 Rexo2 protein_coding Interval_120144 chr4 143000940 143002440 + 0 NA intron (ENSMUSG00000110067.2, intron 1 of 1) protein_coding-intron (ENSMUSG00000110067.2, intron 1 of 2) 72076 ENSMUSG00000110067.2 ENSMUSG00000110067 ENSMUST00000238915 6330411D24Rik protein_coding Interval_130142 chr5 124503478 124504275 + 0 NA promoter-TSS (ENSMUSG00000029392.12) protein_coding-promoter-TSS (ENSMUSG00000029392.12) 95 ENSMUSG00000029392.12 ENSMUSG00000029392 ENSMUST00000199125 Rilpl1 protein_coding Interval_172590 chrX 37157770 37158055 + 0 NA intron (ENSMUSG00000036551.6, intron 3 of 5) protein_coding-intron (ENSMUSG00000036551.6, intron 3 of 5) 10930 ENSMUSG00000036551.6 ENSMUSG00000036551 ENSMUST00000046557 Akap14 protein_coding Interval_12366 chr1 192675102 192675468 + 0 NA intron (ENSMUSG00000037375.16, intron 8 of 11) protein_coding-intron (ENSMUSG00000037375.16, intron 8 of 11) -70286 ENSMUSG00000094131.1 ENSMUSG00000094131 ENSMUST00000082947 Gm22265 snRNA Interval_130981 chr5 134384228 134385684 + 0 NA promoter-TSS (ENSMUSG00000023079.14) protein_coding-promoter-TSS (ENSMUSG00000023079.14) -7932 ENSMUSG00000023079.14 ENSMUSG00000023079 ENSMUST00000201647 Gtf2ird1 protein_coding Interval_13987 chr10 25290851 25291513 + 0 NA intron (ENSMUSG00000039166.16, intron 1 of 2) protein_coding-intron (ENSMUSG00000039166.16, intron 1 of 7) -7427 ENSMUSG00000112352.1 ENSMUSG00000112352 ENSMUST00000218840 Gm40617 antisense Interval_36472 chr12 45466157 45467365 + 0 NA intron (ENSMUSG00000112054.1, intron 1 of 3) lincRNA-intron (ENSMUSG00000112054.1, intron 2 of 4) 465 ENSMUSG00000112054.1 ENSMUSG00000112054 ENSMUST00000219610 Gm33680 lincRNA Interval_63947 chr16 4709083 4709389 + 0 NA TTS (ENSMUSG00000063445.14) protein_coding-TTS (ENSMUSG00000063445.14) 9868 ENSMUSG00000063445.14 ENSMUSG00000063445 ENSMUST00000125140 Nmral1 protein_coding Interval_100434 chr2 168992582 168994778 + 0 NA Intergenic Intergenic -6307 ENSMUSG00000086658.1 ENSMUSG00000086658 ENSMUST00000125121 Gm14260 lincRNA Interval_58075 chr15 27645775 27646371 + 0 NA Intergenic Intergenic 9562 ENSMUSG00000115578.1 ENSMUSG00000115578 ENSMUST00000227140 Gm46506 processed_pseudogene Interval_124951 chr5 61777025 61777340 + 0 NA Intergenic Intergenic -31634 ENSMUSG00000089992.3 ENSMUSG00000089992 ENSMUST00000053876 G6pd2 protein_coding Interval_133258 chr5 150906003 150906489 + 0 NA Intergenic Intergenic -23604 ENSMUSG00000107047.1 ENSMUSG00000107047 ENSMUST00000200887 Gm43298 lincRNA Interval_125986 chr5 76580112 76580418 + 0 NA Intergenic Intergenic -8433 ENSMUSG00000036403.15 ENSMUSG00000036403 ENSMUST00000049060 Cep135 protein_coding Interval_42091 chr13 8540348 8540595 + 0 NA intron (ENSMUSG00000052551.16, intron 1 of 10) protein_coding-intron (ENSMUSG00000052551.16, intron 1 of 9) -12549 ENSMUSG00000113742.1 ENSMUSG00000113742 ENSMUST00000220604 Gm48262 TEC Interval_149259 chr7 96760435 96761721 + 0 NA intron (ENSMUSG00000048078.16, intron 11 of 32) protein_coding-intron (ENSMUSG00000048078.16, intron 13 of 32) -35563 ENSMUSG00000048078.16 ENSMUSG00000048078 ENSMUST00000147659 Tenm4 protein_coding Interval_12528 chr1 194879281 194880315 + 0 NA Intergenic Intergenic 21141 ENSMUSG00000084631.1 ENSMUSG00000084631 ENSMUST00000122682 Gm23885 misc_RNA Interval_164686 chr9 40583353 40583886 + 0 NA Intergenic Intergenic -22690 ENSMUSG00000111858.1 ENSMUSG00000111858 ENSMUST00000214616 Gm48277 lincRNA Interval_102443 chr3 26333182 26334161 + 0 NA TTS (ENSMUSG00000074664.3) antisense-TTS (ENSMUSG00000074664.3) -1211 ENSMUSG00000063887.13 ENSMUSG00000063887 ENSMUST00000192774 Nlgn1 protein_coding Interval_112093 chr4 34639919 34640175 + 0 NA intron (ENSMUSG00000028292.14, intron 8 of 19) protein_coding-intron (ENSMUSG00000028292.14, intron 8 of 19) 25069 ENSMUSG00000028292.14 ENSMUSG00000028292 ENSMUST00000141519 Rars2 protein_coding Interval_31436 chr11 100650551 100651132 + 0 NA promoter-TSS (ENSMUSG00000014198.15) protein_coding-promoter-TSS (ENSMUSG00000014198.15) -7724 ENSMUSG00000109112.1 ENSMUSG00000109112 ENSMUST00000207052 Gm44544 unitary_pseudogene Interval_115776 chr4 103843813 103844388 + 0 NA intron (ENSMUSG00000028519.16, intron 1 of 3) protein_coding-intron (ENSMUSG00000028519.16, intron 1 of 9) 95441 ENSMUSG00000080913.1 ENSMUSG00000080913 ENSMUST00000118859 Gm12719 processed_pseudogene Interval_90381 chr2 30087237 30087793 + 0 NA TTS (ENSMUSG00000026785.14) protein_coding-TTS (ENSMUSG00000026785.14) 2862 ENSMUSG00000026785.14 ENSMUSG00000026785 ENSMUST00000156197 Pkn3 protein_coding Interval_167580 chr9 70611456 70611878 + 0 NA intron (ENSMUSG00000042444.10, intron 6 of 8) protein_coding-intron (ENSMUSG00000042444.10, intron 6 of 8) -44584 ENSMUSG00000074213.3 ENSMUSG00000074213 ENSMUST00000238671 Gm10642 antisense Interval_167939 chr9 74798896 74799117 + 0 NA Intergenic Intergenic 16936 ENSMUSG00000088635.1 ENSMUSG00000088635 ENSMUST00000158010 Gm22315 snoRNA Interval_16663 chr10 66913398 66914601 + 0 NA intron (ENSMUSG00000097134.2, intron 3 of 3) lincRNA-intron (ENSMUSG00000097134.2, intron 3 of 3) 3740 ENSMUSG00000097134.2 ENSMUSG00000097134 ENSMUST00000219021 1110002J07Rik lincRNA Interval_127170 chr5 100798006 100799133 + 0 NA promoter-TSS (ENSMUSG00000016833.14) protein_coding-promoter-TSS (ENSMUSG00000016833.14) -174 ENSMUSG00000016833.14 ENSMUSG00000016833 ENSMUST00000143477 Mrps18c protein_coding Interval_51991 chr14 34467756 34468654 + 0 NA intron (ENSMUSG00000021796.15, intron 1 of 4) protein_coding-intron (ENSMUSG00000021796.15, intron 1 of 12) -33510 ENSMUSG00000090779.1 ENSMUSG00000090779 ENSMUST00000171248 Gm17110 antisense Interval_11456 chr1 182005106 182005353 + 0 NA TTS (ENSMUSG00000102760.1) TEC-TTS (ENSMUSG00000102760.1) 2457 ENSMUSG00000102760.1 ENSMUSG00000102760 ENSMUST00000191734 Gm37258 TEC Interval_157531 chr8 71237386 71237598 + 0 NA Intergenic Intergenic 13543 ENSMUSG00000110664.1 ENSMUSG00000110664 ENSMUST00000212311 Aprt-ps processed_pseudogene Interval_119702 chr4 139324721 139325036 + 0 NA Intergenic Intergenic 8296 ENSMUSG00000028743.7 ENSMUSG00000028743 ENSMUST00000153645 Akr7a5 protein_coding Interval_100640 chr2 170662839 170663441 + 0 NA promoter-TSS (ENSMUSG00000085158.1) lincRNA-promoter-TSS (ENSMUSG00000085158.1) -675 ENSMUSG00000085158.1 ENSMUSG00000085158 ENSMUST00000147141 Gm14264 lincRNA Interval_34628 chr12 8123490 8124504 + 0 NA intron (ENSMUSG00000112694.1, intron 2 of 3) antisense-intron (ENSMUSG00000112694.1, intron 2 of 3) -84152 ENSMUSG00000037669.15 ENSMUSG00000037669 ENSMUST00000219532 Ldah protein_coding Interval_23199 chr11 20500480 20501746 + 0 NA Intergenic Intergenic -42140 ENSMUSG00000049800.13 ENSMUSG00000049800 ENSMUST00000109585 Sertad2 protein_coding Interval_124732 chr5 53600538 53602009 + 0 NA intron (ENSMUSG00000039191.12, intron 3 of 12) protein_coding-intron (ENSMUSG00000039191.12, intron 1 of 10) -37359 ENSMUSG00000039191.12 ENSMUSG00000039191 ENSMUST00000202092 Rbpj protein_coding Interval_135977 chr6 49210220 49210925 + 0 NA intron (ENSMUSG00000029814.10, intron 2 of 3) protein_coding-intron (ENSMUSG00000029814.10, intron 2 of 14) 37813 ENSMUSG00000107727.1 ENSMUSG00000107727 ENSMUST00000203553 Gm18010 processed_pseudogene Interval_108230 chr3 122638344 122639306 + 0 NA Intergenic Intergenic -5554 ENSMUSG00000106562.1 ENSMUSG00000106562 ENSMUST00000199912 Gm5981 processed_pseudogene Interval_80451 chr18 42313660 42314509 + 0 NA exon (ENSMUSG00000024491.16, exon 9 of 20) protein_coding-exon (ENSMUSG00000024491.16, exon 9 of 20) 12194 ENSMUSG00000092935.1 ENSMUSG00000092935 ENSMUST00000175194 Gm22697 miRNA Interval_98457 chr2 152539857 152540619 + 0 NA promoter-TSS (ENSMUSG00000044249.3) protein_coding-promoter-TSS (ENSMUSG00000044249.3) -140 ENSMUSG00000044249.3 ENSMUSG00000044249 ENSMUST00000060598 Defb29 protein_coding Interval_36389 chr12 43192122 43192420 + 0 NA Intergenic Intergenic -113872 ENSMUSG00000112904.1 ENSMUSG00000112904 ENSMUST00000217732 Gm47030 lincRNA Interval_7441 chr1 131378267 131379691 + 0 NA promoter-TSS (ENSMUSG00000104060.1) TEC-promoter-TSS (ENSMUSG00000104060.1) -448 ENSMUSG00000104060.1 ENSMUSG00000104060 ENSMUST00000195400 Gm37954 TEC Interval_95650 chr2 113479153 113479366 + 0 NA intron (ENSMUSG00000044042.19, intron 4 of 17) protein_coding-intron (ENSMUSG00000044042.19, intron 3 of 16) -2438 ENSMUSG00000105821.1 ENSMUSG00000105821 ENSMUST00000199536 Gm44465 miRNA Interval_50629 chr14 16818502 16818811 + 0 NA intron (ENSMUSG00000017491.9, intron 1 of 3) protein_coding-intron (ENSMUSG00000017491.9, intron 1 of 3) -128003 ENSMUSG00000114890.1 ENSMUSG00000114890 ENSMUST00000223705 Tpi-rs9 processed_pseudogene Interval_31580 chr11 101506681 101507974 + 0 NA intron (ENSMUSG00000017146.12, intron 1 of 4) protein_coding-intron (ENSMUSG00000017146.12, intron 15 of 22) 17531 ENSMUSG00000017146.12 ENSMUSG00000017146 ENSMUST00000190862 Brca1 protein_coding Interval_108897 chr3 133085900 133086100 + 0 NA intron (ENSMUSG00000028018.15, intron 1 of 11) protein_coding-intron (ENSMUSG00000028018.15, intron 1 of 11) -2872 ENSMUSG00000028018.15 ENSMUSG00000028018 ENSMUST00000197381 Gstcd protein_coding Interval_53315 chr14 56099009 56099711 + 0 NA TTS (ENSMUSG00000040314.2) protein_coding-TTS (ENSMUSG00000040314.2) 2415 ENSMUSG00000040314.2 ENSMUSG00000040314 ENSMUST00000225312 Ctsg protein_coding Interval_28244 chr11 74648909 74650552 + 0 NA promoter-TSS (ENSMUSG00000020741.17) protein_coding-promoter-TSS (ENSMUSG00000020741.17) 190 ENSMUSG00000020741.17 ENSMUSG00000020741 ENSMUST00000128155 Cluh protein_coding Interval_133470 chr6 5423292 5424219 + 0 NA exon (ENSMUSG00000042607.15, exon 4 of 6) protein_coding-exon (ENSMUSG00000042607.15, exon 4 of 6) 33328 ENSMUSG00000042607.15 ENSMUSG00000042607 ENSMUST00000183358 Asb4 protein_coding Interval_41345 chr12 112958424 112958870 + 0 NA Intergenic Intergenic -8135 ENSMUSG00000097476.1 ENSMUSG00000097476 ENSMUST00000181436 Gm26583 lincRNA Interval_5196 chr1 86410112 86410600 + 0 NA intron (ENSMUSG00000026237.6, intron 2 of 3) protein_coding-intron (ENSMUSG00000026237.6, intron 2 of 3) -12166 ENSMUSG00000026237.6 ENSMUSG00000026237 ENSMUST00000212614 Nmur1 protein_coding Interval_141413 chr6 128099729 128100118 + 0 NA intron (ENSMUSG00000030352.15, intron 1 of 6) protein_coding-intron (ENSMUSG00000030352.15, intron 1 of 8) -4897 ENSMUSG00000076327.1 ENSMUSG00000076327 ENSMUST00000102372 Gm26338 miRNA Interval_74531 chr17 53032882 53033653 + 0 NA Intergenic Intergenic 83207 ENSMUSG00000035580.10 ENSMUSG00000035580 ENSMUST00000184279 Kcnh8 protein_coding Interval_62639 chr15 95874274 95874477 + 0 NA intron (ENSMUSG00000064210.7, intron 3 of 20) protein_coding-intron (ENSMUSG00000064210.7, intron 2 of 19) 5442 ENSMUSG00000092978.1 ENSMUSG00000092978 ENSMUST00000175237 Gm25070 miRNA Interval_98614 chr2 153580529 153581099 + 0 NA Intergenic Intergenic 51917 ENSMUSG00000056941.17 ENSMUSG00000056941 ENSMUST00000109782 Commd7 protein_coding Interval_48378 chr13 98616663 98617950 + 0 NA intron (ENSMUSG00000114521.1, intron 1 of 2) processed_transcript-intron (ENSMUSG00000114521.1, intron 1 of 2) 356 ENSMUSG00000114521.1 ENSMUSG00000114521 ENSMUST00000224567 Gm48050 processed_transcript Interval_100426 chr2 168947491 168948965 + 0 NA intron (ENSMUSG00000027551.15, intron 2 of 8) protein_coding-intron (ENSMUSG00000027551.15, intron 2 of 5) 7038 ENSMUSG00000027551.15 ENSMUSG00000027551 ENSMUST00000136242 Zfp64 protein_coding Interval_108971 chr3 133714605 133715232 + 0 NA Intergenic Intergenic -51527 ENSMUSG00000105952.1 ENSMUSG00000105952 ENSMUST00000197904 Gm40153 lincRNA Interval_116638 chr4 116215578 116216020 + 0 NA intron (ENSMUSG00000111410.1, intron 1 of 9) protein_coding-intron (ENSMUSG00000111410.1, intron 1 of 9) -5819 ENSMUSG00000028698.13 ENSMUSG00000028698 ENSMUST00000106490 Pik3r3 protein_coding Interval_16983 chr10 70283720 70284284 + 0 NA TTS (ENSMUSG00000037762.6) protein_coding-TTS (ENSMUSG00000037762.6) 951 ENSMUSG00000089835.1 ENSMUSG00000089835 ENSMUST00000161841 Gm7097 antisense Interval_95020 chr2 103138919 103139382 + 0 NA Intergenic Intergenic -39021 ENSMUSG00000087032.1 ENSMUSG00000087032 ENSMUST00000135348 Gm13874 lincRNA Interval_121788 chr5 8231334 8232415 + 0 NA intron (ENSMUSG00000040537.17, intron 4 of 4) protein_coding-intron (ENSMUSG00000040537.17, intron 4 of 28) -10849 ENSMUSG00000088103.1 ENSMUSG00000088103 ENSMUST00000157478 Gm23993 snoRNA Interval_136947 chr6 65024399 65025655 + 0 NA Intergenic Intergenic -17640 ENSMUSG00000029920.9 ENSMUSG00000029920 ENSMUST00000203104 Smarcad1 protein_coding Interval_163182 chr9 17286311 17286525 + 0 NA Intergenic Intergenic 216291 ENSMUSG00000111405.1 ENSMUSG00000111405 ENSMUST00000214774 Gm2594 processed_pseudogene Interval_81539 chr18 61554710 61555981 + 0 NA promoter-TSS (ENSMUSG00000024576.14) protein_coding-promoter-TSS (ENSMUSG00000024576.14) 6 ENSMUSG00000024576.14 ENSMUSG00000024576 ENSMUST00000170482 Csnk1a1 protein_coding Interval_148154 chr7 79514422 79516201 + 0 NA promoter-TSS (ENSMUSG00000097023.8) lincRNA-promoter-TSS (ENSMUSG00000097023.8) -1571 ENSMUSG00000103831.1 ENSMUSG00000103831 ENSMUST00000195696 Gm37608 TEC Interval_131815 chr5 140062144 140062965 + 0 NA intron (ENSMUSG00000029554.15, intron 6 of 6) protein_coding-intron (ENSMUSG00000029554.15, intron 17 of 17) -11551 ENSMUSG00000085673.1 ENSMUSG00000085673 ENSMUST00000142625 Gm16122 antisense Interval_124436 chr5 47014282 47014556 + 0 NA Intergenic Intergenic -139232 ENSMUSG00000104660.1 ENSMUSG00000104660 ENSMUST00000196294 Gm43601 TEC Interval_42559 chr13 15471552 15471863 + 0 NA intron (ENSMUSG00000021318.15, intron 1 of 9) protein_coding-intron (ENSMUSG00000021318.15, intron 1 of 14) -7971 ENSMUSG00000097806.3 ENSMUSG00000097806 ENSMUST00000193256 Gm6556 processed_transcript Interval_148219 chr7 79950873 79951484 + 0 NA Intergenic Intergenic 1991 ENSMUSG00000077059.1 ENSMUSG00000077059 ENSMUST00000103871 Gm24541 miRNA Interval_40194 chr12 102450374 102451145 + 0 NA intron (ENSMUSG00000113265.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000113265.1, intron 1 of 2) 3431 ENSMUSG00000113265.1 ENSMUSG00000113265 ENSMUST00000222873 Gm30198 lincRNA Interval_22403 chr11 9632599 9632959 + 0 NA intron (ENSMUSG00000004668.14, intron 58 of 61) protein_coding-intron (ENSMUSG00000004668.14, intron 58 of 61) 72844 ENSMUSG00000104137.1 ENSMUSG00000104137 ENSMUST00000195362 Gm36954 TEC Interval_15156 chr10 42945385 42945625 + 0 NA intron (ENSMUSG00000044770.14, intron 1 of 3) protein_coding-intron (ENSMUSG00000044770.14, intron 6 of 8) -56708 ENSMUSG00000111086.1 ENSMUSG00000111086 ENSMUST00000214070 Gm48671 lincRNA Interval_20775 chr10 120892916 120893723 + 0 NA intron (ENSMUSG00000051236.13, intron 1 of 6) protein_coding-intron (ENSMUSG00000051236.13, intron 1 of 6) -5838 ENSMUSG00000086522.1 ENSMUSG00000086522 ENSMUST00000145987 Gm4473 bidirectional_promoter_lncRNA Interval_57538 chr15 12193698 12194842 + 0 NA TTS (ENSMUSG00000115153.1) lincRNA-TTS (ENSMUSG00000115153.1) 2349 ENSMUSG00000115153.1 ENSMUSG00000115153 ENSMUST00000227731 Gm49240 lincRNA Interval_97133 chr2 131527092 131527491 + 0 NA Intergenic Intergenic -34323 ENSMUSG00000087524.1 ENSMUSG00000087524 ENSMUST00000146049 Gm14285 antisense Interval_87809 chr19 56105485 56106233 + 0 NA promoter-TSS (ENSMUSG00000117695.1) lincRNA-promoter-TSS (ENSMUSG00000117695.1) -451 ENSMUSG00000117695.1 ENSMUSG00000117695 ENSMUST00000238174 Gm31912 lincRNA Interval_98934 chr2 156110793 156112120 + 0 NA intron (ENSMUSG00000098950.7, intron 3 of 6) protein_coding-intron (ENSMUSG00000074643.12, intron 1 of 5) 470 ENSMUSG00000098950.7 ENSMUSG00000098950 ENSMUST00000183518 Gm28036 protein_coding Interval_161596 chr8 121467891 121468887 + 0 NA intron (ENSMUSG00000092329.1, intron 1 of 15) protein_coding-intron (ENSMUSG00000092329.1, intron 1 of 15) 33409 ENSMUSG00000097438.1 ENSMUSG00000097438 ENSMUST00000181666 Gm26784 lincRNA Interval_54039 chr14 64673447 64674210 + 0 NA intron (ENSMUSG00000060012.9, intron 2 of 2) protein_coding-intron (ENSMUSG00000060012.9, intron 2 of 39) 21268 ENSMUSG00000060012.9 ENSMUSG00000060012 ENSMUST00000224677 Kif13b protein_coding Interval_76977 chr17 85330299 85330514 + 0 NA intron (ENSMUSG00000071037.6, intron 3 of 10) protein_coding-intron (ENSMUSG00000071037.6, intron 3 of 10) -168227 ENSMUSG00000097803.1 ENSMUSG00000097803 ENSMUST00000181130 Rpl31-ps16 processed_pseudogene Interval_154404 chr8 15734628 15734826 + 0 NA Intergenic Intergenic 104746 ENSMUSG00000110201.1 ENSMUSG00000110201 ENSMUST00000211202 Gm45675 TEC Interval_10935 chr1 177218736 177219681 + 0 NA intron (ENSMUSG00000019699.16, intron 1 of 12) protein_coding-intron (ENSMUSG00000019699.16, intron 1 of 12) 11478 ENSMUSG00000102427.1 ENSMUSG00000102427 ENSMUST00000193819 Gm37463 TEC Interval_132557 chr5 146315561 146315890 + 0 NA Intergenic Intergenic 29549 ENSMUSG00000029635.15 ENSMUSG00000029635 ENSMUST00000160924 Cdk8 protein_coding Interval_33955 chr11 119644197 119645523 + 0 NA intron (ENSMUSG00000025583.15, intron 1 of 32) protein_coding-intron (ENSMUSG00000025583.15, intron 1 of 33) 1770 ENSMUSG00000083870.1 ENSMUSG00000083870 ENSMUST00000121392 Gm11761 processed_pseudogene Interval_18826 chr10 91141616 91141849 + 0 NA Intergenic Intergenic -17710 ENSMUSG00000061904.12 ENSMUSG00000061904 ENSMUST00000172442 Slc25a3 protein_coding Interval_63313 chr15 100263387 100264320 + 0 NA Intergenic Intergenic -16988 ENSMUSG00000045631.10 ENSMUSG00000045631 ENSMUST00000230901 Tmprss12 protein_coding Interval_144647 chr7 27325676 27326301 + 0 NA intron (ENSMUSG00000040488.18, intron 11 of 22) protein_coding-intron (ENSMUSG00000040488.18, intron 14 of 32) 7660 ENSMUSG00000040488.18 ENSMUSG00000040488 ENSMUST00000206413 Ltbp4 protein_coding Interval_149100 chr7 93225058 93225271 + 0 NA Intergenic Intergenic -45519 ENSMUSG00000087412.4 ENSMUSG00000087412 ENSMUST00000140687 Gm15501 transcribed_processed_pseudogene Interval_73983 chr17 45845982 45846342 + 0 NA Intergenic Intergenic -23839 ENSMUSG00000117139.1 ENSMUSG00000117139 ENSMUST00000233237 Gm35692 lincRNA Interval_142481 chr6 142765222 142765546 + 0 NA intron (ENSMUSG00000030282.14, intron 2 of 4) protein_coding-intron (ENSMUSG00000030282.14, intron 3 of 7) 8609 ENSMUSG00000030282.14 ENSMUSG00000030282 ENSMUST00000146643 Cmas protein_coding Interval_100290 chr2 168191280 168191524 + 0 NA intron (ENSMUSG00000093752.1, intron 9 of 11) protein_coding-intron (ENSMUSG00000051149.15, intron 2 of 4) -13150 ENSMUSG00000092923.1 ENSMUSG00000092923 ENSMUST00000175182 Gm24561 miRNA Interval_16838 chr10 69069620 69070194 + 0 NA Intergenic Intergenic 27959 ENSMUSG00000112083.1 ENSMUSG00000112083 ENSMUST00000218524 Gm47107 lincRNA Interval_165730 chr9 51970304 51970583 + 0 NA Intergenic Intergenic -21736 ENSMUSG00000032051.9 ENSMUSG00000032051 ENSMUST00000214013 Fdx1 protein_coding Interval_169275 chr9 96056581 96057001 + 0 NA exon (ENSMUSG00000032410.13, exon 42 of 42) protein_coding-exon (ENSMUSG00000032410.13, exon 42 of 42) -16118 ENSMUSG00000100931.1 ENSMUSG00000100931 ENSMUST00000189281 Gm28085 antisense Interval_128650 chr5 114508053 114508430 + 0 NA Intergenic Intergenic -43048 ENSMUSG00000086302.1 ENSMUSG00000086302 ENSMUST00000156209 Gm13790 lincRNA Interval_107201 chr3 104566083 104566618 + 0 NA Intergenic Intergenic 34889 ENSMUSG00000084653.1 ENSMUSG00000084653 ENSMUST00000122704 Gm26091 snRNA Interval_64530 chr16 13117346 13120596 + 0 NA intron (ENSMUSG00000022545.13, intron 2 of 3) protein_coding-intron (ENSMUSG00000022545.13, intron 2 of 10) -13420 ENSMUSG00000022545.13 ENSMUSG00000022545 ENSMUST00000156393 Ercc4 protein_coding Interval_64457 chr16 11537971 11538993 + 0 NA intron (ENSMUSG00000071669.14, intron 14 of 20) protein_coding-intron (ENSMUSG00000071669.14, intron 7 of 13) -42176 ENSMUSG00000082653.1 ENSMUSG00000082653 ENSMUST00000117770 Gm15897 processed_pseudogene Interval_166158 chr9 57157651 57158424 + 0 NA promoter-TSS (ENSMUSG00000032299.10) protein_coding-promoter-TSS (ENSMUSG00000032299.10) -903 ENSMUSG00000032299.10 ENSMUSG00000032299 ENSMUST00000214212 Commd4 protein_coding Interval_145343 chr7 34125332 34127687 + 0 NA intron (ENSMUSG00000036459.15, intron 1 of 6) protein_coding-intron (ENSMUSG00000036459.15, intron 1 of 7) 1528 ENSMUSG00000036459.15 ENSMUSG00000036459 ENSMUST00000140911 Wtip protein_coding Interval_158337 chr8 81837793 81838091 + 0 NA intron (ENSMUSG00000037940.17, intron 1 of 17) protein_coding-intron (ENSMUSG00000037940.17, intron 5 of 22) 10244 ENSMUSG00000091998.2 ENSMUSG00000091998 ENSMUST00000166673 Gm17072 processed_pseudogene Interval_31648 chr11 101974414 101975615 + 0 NA intron (ENSMUSG00000003518.13, intron 1 of 1) protein_coding-intron (ENSMUSG00000003518.13, intron 2 of 2) 3871 ENSMUSG00000093467.1 ENSMUSG00000093467 ENSMUST00000176599 Gm20659 antisense Interval_55169 chr14 78885956 78887042 + 0 NA intron (ENSMUSG00000058997.8, intron 2 of 12) protein_coding-intron (ENSMUSG00000058997.8, intron 2 of 44) -55229 ENSMUSG00000115290.1 ENSMUSG00000115290 ENSMUST00000226127 Gm19098 processed_pseudogene Interval_135158 chr6 37048006 37048182 + 0 NA intron (ENSMUSG00000038665.15, intron 12 of 32) protein_coding-intron (ENSMUSG00000038665.15, intron 12 of 32) 91244 ENSMUSG00000107310.1 ENSMUSG00000107310 ENSMUST00000202891 Gm7452 transcribed_processed_pseudogene Interval_170967 chr9 113380312 113380860 + 0 NA Intergenic Intergenic -22889 ENSMUSG00000087817.1 ENSMUSG00000087817 ENSMUST00000157192 Gm22492 misc_RNA Interval_70003 chr17 4264729 4265140 + 0 NA Intergenic Intergenic -142832 ENSMUSG00000116615.1 ENSMUSG00000116615 ENSMUST00000231319 4930548J01Rik processed_transcript Interval_168832 chr9 87748997 87749726 + 0 NA Intergenic Intergenic -9341 ENSMUSG00000102684.1 ENSMUSG00000102684 ENSMUST00000194954 Gm37374 TEC Interval_78832 chr18 20887817 20888153 + 0 NA intron (ENSMUSG00000033382.15, intron 1 of 28) protein_coding-intron (ENSMUSG00000033382.15, intron 1 of 15) 8108 ENSMUSG00000033382.15 ENSMUSG00000033382 ENSMUST00000224530 Trappc8 protein_coding Interval_93592 chr2 74699874 74700454 + 0 NA TTS (ENSMUSG00000043342.9) protein_coding-TTS (ENSMUSG00000043342.9) 978 ENSMUSG00000104570.1 ENSMUSG00000104570 ENSMUST00000198895 Gm44463 miRNA Interval_96578 chr2 125868162 125868789 + 0 NA intron (ENSMUSG00000027207.15, intron 1 of 5) protein_coding-intron (ENSMUSG00000027207.15, intron 1 of 9) 2232 ENSMUSG00000027207.15 ENSMUSG00000027207 ENSMUST00000110454 Galk2 protein_coding Interval_30446 chr11 94409126 94409767 + 0 NA TTS (ENSMUSG00000020866.17) protein_coding-TTS (ENSMUSG00000020866.17) -16470 ENSMUSG00000020865.16 ENSMUSG00000020865 ENSMUST00000126566 Abcc3 protein_coding Interval_2415 chr1 39133766 39134297 + 0 NA Intergenic Intergenic -50693 ENSMUSG00000103182.1 ENSMUSG00000103182 ENSMUST00000195455 Gm37091 TEC Interval_132215 chr5 143386926 143388057 + 0 NA exon (ENSMUSG00000010825.17, exon 15 of 21) protein_coding-exon (ENSMUSG00000010825.17, exon 15 of 21) -8012 ENSMUSG00000105594.1 ENSMUSG00000105594 ENSMUST00000196584 Gm43398 TEC Interval_2071 chr1 36246584 36247012 + 0 NA Intergenic Intergenic -2078 ENSMUSG00000037470.14 ENSMUSG00000037470 ENSMUST00000192159 Uggt1 protein_coding Interval_49346 chr13 111405191 111406204 + 0 NA Intergenic Intergenic -37017 ENSMUSG00000086201.1 ENSMUSG00000086201 ENSMUST00000132731 Gm6270 lincRNA Interval_43509 chr13 32252610 32252825 + 0 NA intron (ENSMUSG00000038372.14, intron 1 of 3) protein_coding-intron (ENSMUSG00000038372.14, intron 1 of 10) 85907 ENSMUSG00000038372.14 ENSMUSG00000038372 ENSMUST00000179717 Gmds protein_coding Interval_101907 chr3 10916434 10917842 + 0 NA Intergenic Intergenic 58448 ENSMUSG00000087858.1 ENSMUSG00000087858 ENSMUST00000157233 Gm22795 snoRNA Interval_172048 chr9 123958317 123959568 + 0 NA Intergenic Intergenic 9750 ENSMUSG00000025804.5 ENSMUSG00000025804 ENSMUST00000026911 Ccr1 protein_coding Interval_146766 chr7 50116975 50117503 + 0 NA intron (ENSMUSG00000055409.14, intron 1 of 5) protein_coding-intron (ENSMUSG00000055409.14, intron 3 of 19) 18929 ENSMUSG00000055409.14 ENSMUSG00000055409 ENSMUST00000154410 Nell1 protein_coding Interval_14891 chr10 40890059 40890319 + 0 NA intron (ENSMUSG00000019831.14, intron 1 of 8) protein_coding-intron (ENSMUSG00000019831.14, intron 1 of 8) 6362 ENSMUSG00000019831.14 ENSMUSG00000019831 ENSMUST00000105509 Wasf1 protein_coding Interval_2247 chr1 37338533 37338911 + 0 NA intron (ENSMUSG00000026113.17, intron 1 of 25) protein_coding-intron (ENSMUSG00000026113.17, intron 1 of 25) -4550 ENSMUSG00000086064.1 ENSMUSG00000086064 ENSMUST00000141402 4930439A04Rik antisense Interval_34123 chr11 120764857 120765591 + 0 NA promoter-TSS (ENSMUSG00000083618.1) unprocessed_pseudogene-promoter-TSS (ENSMUSG00000083618.1) -86 ENSMUSG00000083618.1 ENSMUSG00000083618 ENSMUST00000118124 Gm11771 unprocessed_pseudogene Interval_59833 chr15 59608573 59609904 + 0 NA Intergenic Intergenic -9352 ENSMUSG00000115896.1 ENSMUSG00000115896 ENSMUST00000229684 Gm36677 lincRNA Interval_148081 chr7 79105466 79105663 + 0 NA intron (ENSMUSG00000030607.7, intron 12 of 16) protein_coding-intron (ENSMUSG00000030607.7, intron 12 of 16) 5813 ENSMUSG00000030607.7 ENSMUSG00000030607 ENSMUST00000206779 Acan protein_coding Interval_25716 chr11 51053006 51054909 + 0 NA Intergenic Intergenic -5302 ENSMUSG00000020364.14 ENSMUSG00000020364 ENSMUST00000020628 Zfp354a protein_coding Interval_169050 chr9 91203052 91203290 + 0 NA Intergenic Intergenic -12844 ENSMUSG00000100568.1 ENSMUSG00000100568 ENSMUST00000186887 Gm29602 processed_pseudogene Interval_1542 chr1 25180038 25180524 + 0 NA intron (ENSMUSG00000033569.17, intron 19 of 30) protein_coding-intron (ENSMUSG00000033569.17, intron 18 of 29) 25415 ENSMUSG00000033569.17 ENSMUSG00000033569 ENSMUST00000189254 Adgrb3 protein_coding Interval_162932 chr9 13527646 13528470 + 0 NA intron (ENSMUSG00000031925.17, intron 1 of 4) protein_coding-intron (ENSMUSG00000031925.17, intron 1 of 4) 8122 ENSMUSG00000111223.1 ENSMUSG00000111223 ENSMUST00000213741 Gm47089 TEC Interval_127149 chr5 100632355 100632680 + 0 NA Intergenic Intergenic 31902 ENSMUSG00000029319.8 ENSMUSG00000029319 ENSMUST00000127811 Coq2 protein_coding Interval_59755 chr15 59054641 59055221 + 0 NA exon (ENSMUSG00000022353.10, exon 1 of 1) protein_coding-exon (ENSMUSG00000022353.10, exon 1 of 1) 27074 ENSMUSG00000022353.10 ENSMUSG00000022353 ENSMUST00000227797 Mtss1 protein_coding Interval_98533 chr2 153052465 153053474 + 0 NA intron (ENSMUSG00000042631.7, intron 2 of 2) protein_coding-intron (ENSMUSG00000042631.7, intron 2 of 2) -12986 ENSMUSG00000027474.13 ENSMUSG00000027474 ENSMUST00000109800 Ccm2l protein_coding Interval_7012 chr1 122007714 122008008 + 0 NA Intergenic Intergenic -37337 ENSMUSG00000083584.1 ENSMUSG00000083584 ENSMUST00000119656 Gm15394 processed_pseudogene Interval_122742 chr5 25006903 25007241 + 0 NA intron (ENSMUSG00000028944.14, intron 3 of 15) protein_coding-intron (ENSMUSG00000028944.14, intron 3 of 15) 21230 ENSMUSG00000059631.6 ENSMUSG00000059631 ENSMUST00000075081 1500035N22Rik lincRNA Interval_28633 chr11 77466756 77468102 + 0 NA intron (ENSMUSG00000020836.15, intron 5 of 9) protein_coding-intron (ENSMUSG00000020836.15, intron 5 of 9) 4784 ENSMUSG00000020836.15 ENSMUSG00000020836 ENSMUST00000079770 Coro6 protein_coding Interval_110327 chr3 156946332 156946822 + 0 NA intron (ENSMUSG00000040037.13, intron 2 of 2) protein_coding-intron (ENSMUSG00000040037.13, intron 2 of 6) -25797 ENSMUSG00000086708.1 ENSMUSG00000086708 ENSMUST00000144350 Gm15577 antisense Interval_57337 chr15 8951781 8952090 + 0 NA Intergenic Intergenic -16014 ENSMUSG00000048424.17 ENSMUSG00000048424 ENSMUST00000227191 Ranbp3l protein_coding Interval_160530 chr8 110432586 110433433 + 0 NA intron (ENSMUSG00000059854.8, intron 19 of 25) protein_coding-intron (ENSMUSG00000059854.8, intron 19 of 86) -11542 ENSMUSG00000064393.1 ENSMUSG00000064393 ENSMUST00000082459 Gm23627 snRNA Interval_17965 chr10 81105446 81106885 + 0 NA promoter-TSS (ENSMUSG00000035027.18) protein_coding-promoter-TSS (ENSMUSG00000035027.18) -1492 ENSMUSG00000106347.1 ENSMUSG00000106347 ENSMUST00000198896 Mir5615-1 miRNA Interval_154751 chr8 23108813 23109713 + 0 NA exon (ENSMUSG00000031543.18, exon 21 of 45) protein_coding-exon (ENSMUSG00000031543.18, exon 21 of 45) -7167 ENSMUSG00000106605.1 ENSMUSG00000106605 ENSMUST00000197671 Gm44365 miRNA Interval_121189 chr4 153907537 153908035 + 0 NA exon (ENSMUSG00000085390.1, exon 1 of 2) lincRNA-exon (ENSMUSG00000085390.1, exon 1 of 2) 400 ENSMUSG00000085390.1 ENSMUSG00000085390 ENSMUST00000156438 Gm13115 lincRNA Interval_151908 chr7 127470506 127472288 + 0 NA promoter-TSS (ENSMUSG00000030822.15) protein_coding-promoter-TSS (ENSMUSG00000030822.15) -4122 ENSMUSG00000030822.15 ENSMUSG00000030822 ENSMUST00000206915 Prr14 protein_coding Interval_116584 chr4 115889927 115890944 + 0 NA promoter-TSS (ENSMUSG00000034185.9) protein_coding-promoter-TSS (ENSMUSG00000034185.9) -231 ENSMUSG00000034185.9 ENSMUSG00000034185 ENSMUST00000165938 6430628N08Rik protein_coding Interval_29011 chr11 79908840 79909057 + 0 NA Intergenic Intergenic 2967 ENSMUSG00000082252.1 ENSMUSG00000082252 ENSMUST00000122438 Gm11204 processed_pseudogene Interval_108780 chr3 131236861 131238508 + 0 NA intron (ENSMUSG00000027984.8, intron 6 of 7) protein_coding-intron (ENSMUSG00000027984.8, intron 6 of 7) 34340 ENSMUSG00000027984.8 ENSMUSG00000027984 ENSMUST00000152427 Hadh protein_coding Interval_47798 chr13 93019999 93020236 + 0 NA Intergenic Intergenic -53262 ENSMUSG00000114382.1 ENSMUSG00000114382 ENSMUST00000225665 Gm4814 antisense Interval_31813 chr11 103093659 103095809 + 0 NA intron (ENSMUSG00000020937.14, intron 1 of 1) protein_coding-intron (ENSMUSG00000020937.14, intron 1 of 14) 6884 ENSMUSG00000020937.14 ENSMUSG00000020937 ENSMUST00000142970 Plcd3 protein_coding Interval_141252 chr6 126553759 126554144 + 0 NA TTS (ENSMUSG00000102771.1) TEC-TTS (ENSMUSG00000102771.1) 965 ENSMUSG00000102771.1 ENSMUSG00000102771 ENSMUST00000192232 Gm33320 TEC Interval_13001 chr10 9090949 9091409 + 0 NA Intergenic Intergenic -19704 ENSMUSG00000111077.1 ENSMUSG00000111077 ENSMUST00000216441 Gm48743 TEC Interval_7420 chr1 131160561 131162073 + 0 NA exon (ENSMUSG00000026427.16, exon 7 of 13) protein_coding-exon (ENSMUSG00000026427.16, exon 7 of 13) -5062 ENSMUSG00000026427.16 ENSMUSG00000026427 ENSMUST00000153651 Eif2d protein_coding Interval_19293 chr10 96213763 96214649 + 0 NA Intergenic Intergenic -11814 ENSMUSG00000112762.1 ENSMUSG00000112762 ENSMUST00000218720 4930459C07Rik lincRNA Interval_147122 chr7 63503861 63504460 + 0 NA intron (ENSMUSG00000033510.14, intron 1 of 2) protein_coding-intron (ENSMUSG00000033510.14, intron 1 of 13) -38319 ENSMUSG00000081788.2 ENSMUSG00000081788 ENSMUST00000121016 Gm5898 processed_pseudogene Interval_164396 chr9 36738922 36739140 + 0 NA intron (ENSMUSG00000032116.18, intron 15 of 17) protein_coding-intron (ENSMUSG00000032116.18, intron 15 of 17) -16286 ENSMUSG00000032113.16 ENSMUSG00000032113 ENSMUST00000172742 Chek1 protein_coding Interval_127499 chr5 104502847 104503609 + 0 NA intron (ENSMUSG00000034462.9, intron 14 of 14) protein_coding-intron (ENSMUSG00000034462.9, intron 14 of 14) -5122 ENSMUSG00000097392.4 ENSMUSG00000097392 ENSMUST00000196593 Thoc2l protein_coding Interval_20694 chr10 120267958 120268679 + 0 NA Intergenic Intergenic -12922 ENSMUSG00000112322.1 ENSMUSG00000112322 ENSMUST00000219103 Gm48115 TEC Interval_50191 chr14 9241871 9242683 + 0 NA Intergenic Intergenic -158347 ENSMUSG00000114615.1 ENSMUSG00000114615 ENSMUST00000224264 Gm48370 lincRNA Interval_75801 chr17 71485548 71486902 + 0 NA Intergenic Intergenic 2833 ENSMUSG00000117107.1 ENSMUSG00000117107 ENSMUST00000232895 Gm18738 processed_pseudogene Interval_40929 chr12 109971679 109973812 + 0 NA Intergenic Intergenic 51128 ENSMUSG00000113063.1 ENSMUSG00000113063 ENSMUST00000222974 Gm34667 lincRNA Interval_5710 chr1 91130244 91130651 + 0 NA Intergenic Intergenic -14642 ENSMUSG00000070732.2 ENSMUSG00000070732 ENSMUST00000185229 Rbm44 protein_coding Interval_105715 chr3 88890628 88890887 + 0 NA exon (ENSMUSG00000054199.17, exon 1 of 6) protein_coding-exon (ENSMUSG00000054199.17, exon 1 of 6) 9244 ENSMUSG00000106218.1 ENSMUSG00000106218 ENSMUST00000198251 Gm43713 antisense Interval_41708 chr12 118036170 118036729 + 0 NA exon (ENSMUSG00000018581.15, exon 42 of 82) protein_coding-exon (ENSMUSG00000018581.15, exon 42 of 82) 23854 ENSMUSG00000018581.15 ENSMUSG00000018581 ENSMUST00000176239 Dnah11 protein_coding Interval_128357 chr5 112751811 112752149 + 0 NA intron (ENSMUSG00000072720.9, intron 6 of 10) protein_coding-intron (ENSMUSG00000072720.9, intron 39 of 43) -41352 ENSMUSG00000098230.7 ENSMUSG00000098230 ENSMUST00000189887 1700095B10Rik antisense Interval_88651 chr2 8754275 8754560 + 0 NA Intergenic Intergenic 120480 ENSMUSG00000084374.1 ENSMUSG00000084374 ENSMUST00000117255 Gm13255 processed_pseudogene Interval_117725 chr4 125838558 125839372 + 0 NA Intergenic Intergenic 83452 ENSMUSG00000085562.7 ENSMUSG00000085562 ENSMUST00000144539 2610028E06Rik lincRNA Interval_73 GL456212.1 145626 147152 + 0 NA NA NA NA NA Interval_135131 chr6 36147416 36147622 + 0 NA Intergenic Intergenic 41580 ENSMUSG00000107089.1 ENSMUSG00000107089 ENSMUST00000202337 Gm43443 TEC Interval_168919 chr9 88586571 88587116 + 0 NA TTS (ENSMUSG00000090693.4) protein_coding-TTS (ENSMUSG00000090693.4) 5696 ENSMUSG00000090693.4 ENSMUSG00000090693 ENSMUST00000216686 Trim43a protein_coding Interval_1475 chr1 23934808 23935572 + 0 NA Intergenic Intergenic -25454 ENSMUSG00000026155.13 ENSMUSG00000026155 ENSMUST00000133398 Smap1 protein_coding Interval_167980 chr9 75231670 75232609 + 0 NA promoter-TSS (ENSMUSG00000033590.8) protein_coding-promoter-TSS (ENSMUSG00000033590.8) 63 ENSMUSG00000033590.8 ENSMUSG00000033590 ENSMUST00000216529 Myo5c protein_coding Interval_130823 chr5 130995744 130996222 + 0 NA intron (ENSMUSG00000034040.16, intron 5 of 5) protein_coding-intron (ENSMUSG00000034040.16, intron 5 of 10) -35948 ENSMUSG00000107295.1 ENSMUSG00000107295 ENSMUST00000201249 Gm42896 TEC Interval_153195 chr7 142314761 142315020 + 0 NA Intergenic Intergenic -8596 ENSMUSG00000083812.3 ENSMUSG00000083812 ENSMUST00000119351 Gm5054 processed_pseudogene Interval_135966 chr6 49137552 49138991 + 0 NA intron (ENSMUSG00000029814.10, intron 3 of 9) protein_coding-intron (ENSMUSG00000029814.10, intron 3 of 14) -34488 ENSMUSG00000107727.1 ENSMUSG00000107727 ENSMUST00000203553 Gm18010 processed_pseudogene Interval_84752 chr19 16258400 16259662 + 0 NA intron (ENSMUSG00000024639.5, intron 2 of 2) protein_coding-intron (ENSMUSG00000024639.5, intron 2 of 6) 8590 ENSMUSG00000075268.2 ENSMUSG00000075268 ENSMUST00000099988 Gm10819 processed_pseudogene Interval_13188 chr10 12911626 12912587 + 0 NA Intergenic Intergenic 10984 ENSMUSG00000097378.8 ENSMUSG00000097378 ENSMUST00000180529 B230208H11Rik lincRNA Interval_64237 chr16 9513751 9514617 + 0 NA Intergenic Intergenic 355414 ENSMUSG00000116123.1 ENSMUSG00000116123 ENSMUST00000229655 Gm49451 lincRNA Interval_46459 chr13 66325354 66325861 + 0 NA intron (ENSMUSG00000114616.1, intron 2 of 2) lincRNA-intron (ENSMUSG00000114616.1, intron 2 of 2) 9272 ENSMUSG00000114328.1 ENSMUSG00000114328 ENSMUST00000224794 Gm48246 processed_pseudogene Interval_71966 chr17 27299297 27299495 + 0 NA Intergenic Intergenic 17699 ENSMUSG00000105142.1 ENSMUSG00000105142 ENSMUST00000198396 Mir7214 miRNA Interval_82989 chr18 80200241 80201172 + 0 NA promoter-TSS (ENSMUSG00000024570.7) protein_coding-promoter-TSS (ENSMUSG00000024570.7) -5503 ENSMUSG00000024570.7 ENSMUSG00000024570 ENSMUST00000236460 Rbfa protein_coding Interval_153147 chr7 141642736 141643788 + 0 NA exon (ENSMUSG00000048191.15, exon 27 of 34) protein_coding-exon (ENSMUSG00000048191.15, exon 27 of 34) 12046 ENSMUSG00000048191.15 ENSMUSG00000048191 ENSMUST00000190907 Muc6 protein_coding Interval_137572 chr6 73367636 73369010 + 0 NA Intergenic Intergenic -23819 ENSMUSG00000093965.1 ENSMUSG00000093965 ENSMUST00000178007 Gm24370 miRNA Interval_48352 chr13 98436136 98436338 + 0 NA Intergenic Intergenic -1172 ENSMUSG00000099446.1 ENSMUSG00000099446 ENSMUST00000186644 2310005E17Rik lincRNA Interval_39327 chr12 86760807 86761658 + 0 NA intron (ENSMUSG00000059114.8, intron 11 of 13) protein_coding-intron (ENSMUSG00000059114.8, intron 11 of 14) 26863 ENSMUSG00000059114.8 ENSMUSG00000059114 ENSMUST00000223197 Lrrc74a protein_coding Interval_164152 chr9 32005801 32006097 + 0 NA promoter-TSS (ENSMUSG00000111771.1) lincRNA-promoter-TSS (ENSMUSG00000111771.1) -489 ENSMUSG00000111771.1 ENSMUSG00000111771 ENSMUST00000216368 Gm47465 lincRNA Interval_95122 chr2 104040652 104041071 + 0 NA TTS (ENSMUSG00000087739.1) scaRNA-TTS (ENSMUSG00000087739.1) 192 ENSMUSG00000087739.1 ENSMUSG00000087739 ENSMUST00000157114 Gm24644 scaRNA Interval_154737 chr8 22941598 22942028 + 0 NA exon (ENSMUSG00000031540.14, exon 18 of 18) protein_coding-exon (ENSMUSG00000031540.14, exon 18 of 18) 16628 ENSMUSG00000109793.1 ENSMUSG00000109793 ENSMUST00000210691 Gm10043 processed_pseudogene Interval_60632 chr15 75831847 75832229 + 0 NA intron (ENSMUSG00000075600.3, intron 3 of 11) protein_coding-intron (ENSMUSG00000075600.3, intron 3 of 11) -3829 ENSMUSG00000075600.3 ENSMUSG00000075600 ENSMUST00000229000 Zc3h3 protein_coding Interval_97755 chr2 143852302 143853819 + 0 NA intron (ENSMUSG00000027420.13, intron 2 of 7) protein_coding-intron (ENSMUSG00000027420.13, intron 2 of 7) -2589 ENSMUSG00000082987.1 ENSMUSG00000082987 ENSMUST00000120038 Rps13-ps6 processed_pseudogene Interval_18913 chr10 93068862 93070981 + 0 NA exon (ENSMUSG00000020014.17, exon 2 of 18) protein_coding-exon (ENSMUSG00000020014.17, exon 2 of 18) -15330 ENSMUSG00000111013.1 ENSMUSG00000111013 ENSMUST00000214288 Gm32468 lincRNA Interval_30940 chr11 97315535 97316290 + 0 NA promoter-TSS (ENSMUSG00000018882.12) protein_coding-promoter-TSS (ENSMUSG00000018882.12) 4 ENSMUSG00000018882.12 ENSMUSG00000018882 ENSMUST00000132168 Mrpl45 protein_coding Interval_13364 chr10 17213123 17214535 + 0 NA Intergenic Intergenic 97025 ENSMUSG00000088436.1 ENSMUSG00000088436 ENSMUST00000157811 Gm25382 snRNA Interval_117492 chr4 124142188 124142480 + 0 NA Intergenic Intergenic 136843 ENSMUSG00000103541.1 ENSMUSG00000103541 ENSMUST00000193103 Gm37667 TEC Interval_52163 chr14 37580881 37581156 + 0 NA Intergenic Intergenic 25770 ENSMUSG00000114334.1 ENSMUSG00000114334 ENSMUST00000224767 Gm31393 lincRNA Interval_140827 chr6 121930743 121931625 + 0 NA intron (ENSMUSG00000108083.1, intron 7 of 26) unprocessed_pseudogene-intron (ENSMUSG00000108083.1, intron 7 of 26) 14754 ENSMUSG00000108083.1 ENSMUSG00000108083 ENSMUST00000203118 Mug4-ps unprocessed_pseudogene Interval_163797 chr9 26117258 26117471 + 0 NA Intergenic Intergenic -83885 ENSMUSG00000111240.1 ENSMUSG00000111240 ENSMUST00000213586 Gm39312 lincRNA Interval_149853 chr7 102014241 102015060 + 0 NA TTS (ENSMUSG00000070427.4) protein_coding-TTS (ENSMUSG00000070427.4) 3509 ENSMUSG00000070427.4 ENSMUSG00000070427 ENSMUST00000211502 Il18bp protein_coding Interval_95731 chr2 115441693 115441909 + 0 NA Intergenic Intergenic 85943 ENSMUSG00000085582.7 ENSMUSG00000085582 ENSMUST00000125147 3110099E03Rik lincRNA Interval_104305 chr3 63158940 63159683 + 0 NA Intergenic Intergenic 7094 ENSMUSG00000089175.1 ENSMUSG00000089175 ENSMUST00000158550 Gm22433 scaRNA Interval_173393 chrX 86898591 86899190 + 0 NA intron (ENSMUSG00000052372.10, intron 6 of 10) protein_coding-intron (ENSMUSG00000052372.10, intron 5 of 9) 106416 ENSMUSG00000083779.1 ENSMUSG00000083779 ENSMUST00000122089 Gm14775 processed_pseudogene Interval_82658 chr18 75705526 75706348 + 0 NA Intergenic Intergenic -61206 ENSMUSG00000118164.1 ENSMUSG00000118164 ENSMUST00000237826 Gm20570 processed_pseudogene Interval_5174 chr1 86236315 86237219 + 0 NA intron (ENSMUSG00000062590.13, intron 7 of 8) protein_coding-intron (ENSMUSG00000062590.13, intron 19 of 24) 64608 ENSMUSG00000087538.1 ENSMUSG00000087538 ENSMUST00000126385 Gm16341 antisense Interval_89087 chr2 16056658 16056986 + 0 NA intron (ENSMUSG00000075520.5, intron 30 of 38) protein_coding-intron (ENSMUSG00000075520.5, intron 30 of 38) -33397 ENSMUSG00000103865.1 ENSMUSG00000103865 ENSMUST00000193596 Gm37416 TEC Interval_83408 chr18 84951125 84952672 + 0 NA promoter-TSS (ENSMUSG00000024645.5) protein_coding-promoter-TSS (ENSMUSG00000024645.5) -374 ENSMUSG00000024645.5 ENSMUSG00000024645 ENSMUST00000235591 Timm21 protein_coding Interval_174802 chrX 166929838 166930387 + 0 NA Intergenic Intergenic -5357 ENSMUSG00000082019.1 ENSMUSG00000082019 ENSMUST00000119174 Gm15231 processed_pseudogene Interval_16386 chr10 62672278 62672580 + 0 NA intron (ENSMUSG00000036923.12, intron 1 of 3) protein_coding-intron (ENSMUSG00000036923.12, intron 2 of 3) 2626 ENSMUSG00000112901.1 ENSMUSG00000112901 ENSMUST00000218980 Gm18514 processed_pseudogene Interval_136847 chr6 61330011 61330206 + 0 NA intron (ENSMUSG00000039578.17, intron 1 of 3) protein_coding-intron (ENSMUSG00000039578.17, intron 2 of 9) -70499 ENSMUSG00000107757.1 ENSMUSG00000107757 ENSMUST00000204456 Gm43898 processed_pseudogene Interval_71787 chr17 26094975 26095685 + 0 NA intron (ENSMUSG00000024177.9, intron 1 of 5) protein_coding-intron (ENSMUSG00000024177.9, intron 1 of 4) -1162 ENSMUSG00000024177.9 ENSMUSG00000024177 ENSMUST00000150280 Nme4 protein_coding Interval_43352 chr13 29576477 29577106 + 0 NA intron (ENSMUSG00000006191.17, intron 9 of 10) protein_coding-intron (ENSMUSG00000006191.17, intron 9 of 15) -59337 ENSMUSG00000006191.17 ENSMUSG00000006191 ENSMUST00000129231 Cdkal1 protein_coding Interval_116975 chr4 118581227 118581787 + 0 NA intron (ENSMUSG00000028730.14, intron 14 of 21) protein_coding-intron (ENSMUSG00000028730.14, intron 15 of 22) -38218 ENSMUSG00000050854.9 ENSMUSG00000050854 ENSMUST00000154025 Tmem125 protein_coding Interval_35275 chr12 19433534 19433800 + 0 NA promoter-TSS (ENSMUSG00000116775.1) lincRNA-promoter-TSS (ENSMUSG00000116775.1) -862 ENSMUSG00000116775.1 ENSMUSG00000116775 ENSMUST00000231385 Gm49769 lincRNA Interval_161293 chr8 119574360 119575937 + 0 NA promoter-TSS (ENSMUSG00000034189.5) protein_coding-promoter-TSS (ENSMUSG00000034189.5) -87 ENSMUSG00000031831.6 ENSMUSG00000031831 ENSMUST00000093100 Dnaaf1 protein_coding Interval_26634 chr11 59366661 59367431 + 0 NA Intergenic Intergenic -8415 ENSMUSG00000086910.1 ENSMUSG00000086910 ENSMUST00000133698 Gm15755 antisense Interval_62507 chr15 93579398 93580132 + 0 NA intron (ENSMUSG00000036158.12, intron 1 of 7) protein_coding-intron (ENSMUSG00000036158.12, intron 1 of 7) -60242 ENSMUSG00000036158.12 ENSMUSG00000036158 ENSMUST00000048982 Prickle1 protein_coding Interval_79385 chr18 31515438 31515909 + 0 NA Intergenic Intergenic 5089 ENSMUSG00000117576.1 ENSMUSG00000117576 ENSMUST00000234311 Gm5241 processed_pseudogene Interval_137169 chr6 68886767 68887005 + 0 NA Intergenic Intergenic -6212 ENSMUSG00000105630.1 ENSMUSG00000105630 ENSMUST00000198756 Gm42543 IG_V_gene Interval_51955 chr14 34227882 34228644 + 0 NA TTS (ENSMUSG00000041479.14) protein_coding-TTS (ENSMUSG00000041479.14) 3465 ENSMUSG00000115124.1 ENSMUSG00000115124 ENSMUST00000227403 Gm49201 lincRNA Interval_55514 chr14 89759356 89759608 + 0 NA Intergenic Intergenic 52677 ENSMUSG00000077408.1 ENSMUSG00000077408 ENSMUST00000104220 Gm25415 snoRNA Interval_100578 chr2 170227786 170228864 + 0 NA Intergenic Intergenic -56710 ENSMUSG00000084013.1 ENSMUSG00000084013 ENSMUST00000118388 Gm14270 processed_pseudogene Interval_33249 chr11 115469583 115469864 + 0 NA TTS (ENSMUSG00000045775.15) protein_coding-TTS (ENSMUSG00000045775.15) -6231 ENSMUSG00000057219.11 ENSMUSG00000057219 ENSMUST00000140181 Armc7 protein_coding Interval_63248 chr15 99921257 99922719 + 0 NA intron (ENSMUSG00000045350.15, intron 7 of 7) protein_coding-intron (ENSMUSG00000045350.15, intron 3 of 3) -6088 ENSMUSG00000116255.1 ENSMUSG00000116255 ENSMUST00000230306 Gm20564 processed_pseudogene Interval_82540 chr18 75021543 75021746 + 0 NA intron (ENSMUSG00000035765.10, intron 1 of 8) protein_coding-intron (ENSMUSG00000035765.10, intron 1 of 16) -2212 ENSMUSG00000098305.1 ENSMUSG00000098305 ENSMUST00000185185 Gm27781 rRNA Interval_44492 chr13 45359480 45359835 + 0 NA Intergenic Intergenic -31270 ENSMUSG00000038175.10 ENSMUSG00000038175 ENSMUST00000222178 Mylip protein_coding Interval_162812 chr9 9375097 9376542 + 0 NA intron (ENSMUSG00000111061.1, intron 2 of 3) lincRNA-intron (ENSMUSG00000111061.1, intron 2 of 3) -58773 ENSMUSG00000111317.1 ENSMUSG00000111317 ENSMUST00000217395 Gm47333 processed_pseudogene Interval_148644 chr7 83774525 83775558 + 0 NA TTS (ENSMUSG00000011154.17) protein_coding-TTS (ENSMUSG00000011154.17) 8971 ENSMUSG00000011154.17 ENSMUSG00000011154 ENSMUST00000149671 Cfap161 protein_coding Interval_90822 chr2 32821496 32821786 + 0 NA intron (ENSMUSG00000026797.16, intron 3 of 5) protein_coding-intron (ENSMUSG00000026797.16, intron 3 of 18) -10348 ENSMUSG00000064652.1 ENSMUSG00000064652 ENSMUST00000082718 Gm24165 snoRNA Interval_22634 chr11 12415479 12415759 + 0 NA intron (ENSMUSG00000020173.17, intron 1 of 11) protein_coding-intron (ENSMUSG00000020173.17, intron 1 of 14) -3475 ENSMUSG00000020173.17 ENSMUSG00000020173 ENSMUST00000146067 Cobl protein_coding Interval_83386 chr18 84798582 84800466 + 0 NA exon (ENSMUSG00000117781.1, exon 11 of 11) protein_coding-exon (ENSMUSG00000117781.1, exon 11 of 11) -22478 ENSMUSG00000088070.1 ENSMUSG00000088070 ENSMUST00000157445 Gm22819 misc_RNA Interval_96156 chr2 120136891 120137225 + 0 NA exon (ENSMUSG00000027293.13, exon 2 of 6) protein_coding-exon (ENSMUSG00000027293.13, exon 2 of 6) 502 ENSMUSG00000027293.13 ENSMUSG00000027293 ENSMUST00000148073 Ehd4 protein_coding Interval_155770 chr8 37131582 37131986 + 0 NA intron (ENSMUSG00000110285.1, intron 1 of 3) lincRNA-intron (ENSMUSG00000110285.1, intron 1 of 3) -22931 ENSMUSG00000109932.1 ENSMUSG00000109932 ENSMUST00000210047 Gm7319 processed_pseudogene Interval_14088 chr10 26772102 26773291 + 0 NA exon (ENSMUSG00000039031.16, exon 1 of 15) protein_coding-exon (ENSMUSG00000039031.16, exon 1 of 15) 149 ENSMUSG00000039031.16 ENSMUSG00000039031 ENSMUST00000142284 Arhgap18 protein_coding Interval_48687 chr13 101233531 101235834 + 0 NA intron (ENSMUSG00000114590.1, intron 1 of 3) lincRNA-intron (ENSMUSG00000114590.1, intron 1 of 3) 2555 ENSMUSG00000114590.1 ENSMUSG00000114590 ENSMUST00000223648 5930438M14Rik lincRNA Interval_126351 chr5 86899878 86900594 + 0 NA intron (ENSMUSG00000029260.15, intron 3 of 4) protein_coding-intron (ENSMUSG00000029260.15, intron 3 of 5) 6701 ENSMUSG00000029260.15 ENSMUSG00000029260 ENSMUST00000113333 Ugt2b34 protein_coding Interval_113235 chr4 51334894 51335090 + 0 NA Intergenic Intergenic -80965 ENSMUSG00000019836.5 ENSMUSG00000019836 ENSMUST00000118392 Amd-ps4 processed_pseudogene Interval_14790 chr10 39920133 39920600 + 0 NA TTS (ENSMUSG00000039339.4) transcribed_unprocessed_pseudogene-TTS (ENSMUSG00000039339.4) 6583 ENSMUSG00000039339.4 ENSMUSG00000039339 ENSMUST00000239105 Mfsd4b2 transcribed_unprocessed_pseudogene Interval_8222 chr1 136588815 136589258 + 0 NA Intergenic Intergenic -9559 ENSMUSG00000104509.1 ENSMUSG00000104509 ENSMUST00000193724 Gm33994 lincRNA Interval_133930 chr6 15755778 15757407 + 0 NA intron (ENSMUSG00000041390.18, intron 3 of 4) protein_coding-intron (ENSMUSG00000041390.18, intron 3 of 4) 35931 ENSMUSG00000041390.18 ENSMUSG00000041390 ENSMUST00000128849 Mdfic protein_coding Interval_109667 chr3 145872647 145874922 + 0 NA intron (ENSMUSG00000028194.15, intron 4 of 4) protein_coding-intron (ENSMUSG00000028194.15, intron 4 of 5) -5236 ENSMUSG00000105388.1 ENSMUSG00000105388 ENSMUST00000197973 Rpl36a-ps2 processed_pseudogene Interval_72294 chr17 29018402 29019176 + 0 NA intron (ENSMUSG00000086154.2, intron 1 of 2) bidirectional_promoter_lncRNA-intron (ENSMUSG00000086154.2, intron 1 of 2) -2504 ENSMUSG00000087308.1 ENSMUSG00000087308 ENSMUST00000130607 Gm16195 lincRNA Interval_116184 chr4 108459176 108460841 + 0 NA promoter-TSS (ENSMUSG00000034610.14) protein_coding-promoter-TSS (ENSMUSG00000034610.14) 7042 ENSMUSG00000095361.1 ENSMUSG00000095361 ENSMUST00000179791 Gm24967 snRNA Interval_138880 chr6 92854366 92854586 + 0 NA exon (ENSMUSG00000030022.14, exon 1 of 1) protein_coding-exon (ENSMUSG00000030022.14, exon 1 of 1) 156 ENSMUSG00000030022.14 ENSMUSG00000030022 ENSMUST00000136751 Adamts9 protein_coding Interval_88369 chr2 4512550 4513922 + 0 NA intron (ENSMUSG00000026657.17, intron 5 of 9) protein_coding-intron (ENSMUSG00000026657.17, intron 5 of 23) -46566 ENSMUSG00000086874.1 ENSMUSG00000086874 ENSMUST00000139479 Gm13175 antisense Interval_45664 chr13 56659688 56660094 + 0 NA Intergenic Intergenic 28678 ENSMUSG00000035493.10 ENSMUSG00000035493 ENSMUST00000226024 Tgfbi protein_coding Interval_65810 chr16 29034160 29034754 + 0 NA Intergenic Intergenic -83102 ENSMUSG00000116861.1 ENSMUSG00000116861 ENSMUST00000232466 Gm8253 processed_pseudogene Interval_149895 chr7 102377780 102378110 + 0 NA exon (ENSMUSG00000110175.1, exon 1 of 1) processed_pseudogene-exon (ENSMUSG00000110175.1, exon 1 of 1) 392 ENSMUSG00000110175.1 ENSMUSG00000110175 ENSMUST00000211316 Gm18255 processed_pseudogene Interval_132611 chr5 146726895 146727280 + 0 NA Intergenic Intergenic 20465 ENSMUSG00000106020.1 ENSMUSG00000106020 ENSMUST00000197707 4930573C15Rik lincRNA Interval_171444 chr9 118396352 118396965 + 0 NA Intergenic Intergenic 6644 ENSMUSG00000103968.1 ENSMUSG00000103968 ENSMUST00000193035 2610509F24Rik TEC Interval_143980 chr7 18746415 18746884 + 0 NA Intergenic Intergenic -1440 ENSMUSG00000096479.1 ENSMUSG00000096479 ENSMUST00000179697 Gm24464 snRNA Interval_38338 chr12 77516985 77517519 + 0 NA Intergenic Intergenic 9146 ENSMUSG00000111939.1 ENSMUSG00000111939 ENSMUST00000219567 Gm48177 processed_pseudogene Interval_147630 chr7 70345974 70346682 + 0 NA promoter-TSS (ENSMUSG00000109361.1) lincRNA-promoter-TSS (ENSMUSG00000109361.1) -518 ENSMUSG00000109361.1 ENSMUSG00000109361 ENSMUST00000208425 Gm44946 lincRNA Interval_147897 chr7 75280372 75280570 + 0 NA intron (ENSMUSG00000053025.13, intron 1 of 12) protein_coding-intron (ENSMUSG00000053025.13, intron 1 of 12) 5382 ENSMUSG00000088683.1 ENSMUSG00000088683 ENSMUST00000158058 Gm24858 misc_RNA Interval_3572 chr1 59660653 59661897 + 0 NA intron (ENSMUSG00000026021.15, intron 1 of 3) protein_coding-intron (ENSMUSG00000026021.15, intron 1 of 4) 9517 ENSMUSG00000026021.15 ENSMUSG00000026021 ENSMUST00000123857 Sumo1 protein_coding Interval_111689 chr4 25815521 25816538 + 0 NA Intergenic Intergenic 3744 ENSMUSG00000065048.1 ENSMUSG00000065048 ENSMUST00000083114 Gm24042 snRNA Interval_39195 chr12 85745660 85747453 + 0 NA promoter-TSS (ENSMUSG00000034258.4) protein_coding-promoter-TSS (ENSMUSG00000034258.4) 18099 ENSMUSG00000113464.1 ENSMUSG00000113464 ENSMUST00000220921 Gm47901 processed_pseudogene Interval_122431 chr5 22559580 22561459 + 0 NA intron (ENSMUSG00000097207.7, intron 2 of 5) lincRNA-intron (ENSMUSG00000097207.7, intron 2 of 4) -3438 ENSMUSG00000105156.1 ENSMUSG00000105156 ENSMUST00000198791 Gm9057 processed_pseudogene Interval_111783 chr4 28781792 28782231 + 0 NA Intergenic Intergenic -31315 ENSMUSG00000028289.12 ENSMUSG00000028289 ENSMUST00000129912 Epha7 protein_coding Interval_168435 chr9 80303506 80303979 + 0 NA intron (ENSMUSG00000033577.18, intron 34 of 35) protein_coding-intron (ENSMUSG00000033577.18, intron 31 of 32) -38292 ENSMUSG00000099016.1 ENSMUSG00000099016 ENSMUST00000183413 Gm27227 antisense Interval_171411 chr9 117861689 117862023 + 0 NA intron (ENSMUSG00000039607.17, intron 1 of 3) protein_coding-intron (ENSMUSG00000039607.17, intron 1 of 3) 10825 ENSMUSG00000039607.17 ENSMUSG00000039607 ENSMUST00000210659 Rbms3 protein_coding Interval_109330 chr3 139023739 139023934 + 0 NA intron (ENSMUSG00000028149.12, intron 2 of 12) protein_coding-intron (ENSMUSG00000028149.12, intron 2 of 13) -45755 ENSMUSG00000104724.1 ENSMUSG00000104724 ENSMUST00000198292 Gm43162 TEC Interval_9881 chr1 163771634 163772170 + 0 NA Intergenic Intergenic -7681 ENSMUSG00000026585.13 ENSMUSG00000026585 ENSMUST00000027877 Kifap3 protein_coding Interval_35128 chr12 17464473 17465527 + 0 NA Intergenic Intergenic 28382 ENSMUSG00000113246.1 ENSMUSG00000113246 ENSMUST00000220527 Gm36752 lincRNA Interval_145213 chr7 30678218 30678451 + 0 NA Intergenic Intergenic -6734 ENSMUSG00000049761.6 ENSMUSG00000049761 ENSMUST00000186845 Pmis2 protein_coding Interval_25298 chr11 46177501 46177820 + 0 NA Intergenic Intergenic 7573 ENSMUSG00000099331.1 ENSMUSG00000099331 ENSMUST00000183384 Mir7239 miRNA Interval_103943 chr3 55280144 55281217 + 0 NA intron (ENSMUSG00000027797.15, intron 3 of 16) protein_coding-intron (ENSMUSG00000027797.15, intron 3 of 16) -24637 ENSMUSG00000064586.1 ENSMUSG00000064586 ENSMUST00000082652 Gm25132 snRNA Interval_150251 chr7 108992055 108992256 + 0 NA intron (ENSMUSG00000031028.14, intron 1 of 3) protein_coding-intron (ENSMUSG00000031028.14, intron 1 of 3) 41498 ENSMUSG00000031028.14 ENSMUSG00000031028 ENSMUST00000147943 Tub protein_coding Interval_122256 chr5 20710569 20711723 + 0 NA Intergenic Intergenic 8869 ENSMUSG00000073174.6 ENSMUSG00000073174 ENSMUST00000189302 Gm29254 3prime_overlapping_ncRNA Interval_86370 chr19 39098765 39098982 + 0 NA Intergenic Intergenic -15037 ENSMUSG00000067229.3 ENSMUSG00000067229 ENSMUST00000146494 Cyp2c66 protein_coding Interval_58170 chr15 30232446 30232737 + 0 NA intron (ENSMUSG00000022240.10, intron 1 of 2) protein_coding-intron (ENSMUSG00000022240.10, intron 1 of 22) -180035 ENSMUSG00000065726.1 ENSMUSG00000065726 ENSMUST00000083792 Gm26163 snoRNA Interval_77724 chr17 94695772 94696019 + 0 NA Intergenic Intergenic 3006 ENSMUSG00000117586.1 ENSMUSG00000117586 ENSMUST00000234452 Gm50006 processed_pseudogene Interval_92849 chr2 66445629 66446250 + 0 NA intron (ENSMUSG00000087301.7, intron 1 of 3) antisense-intron (ENSMUSG00000087301.7, intron 1 of 2) 1468 ENSMUSG00000080855.3 ENSMUSG00000080855 ENSMUST00000118070 Rpl35-ps1 processed_pseudogene Interval_63448 chr15 101145266 101146270 + 0 NA TTS (ENSMUSG00000000530.16) protein_coding-TTS (ENSMUSG00000000530.16) -14176 ENSMUSG00000087690.1 ENSMUSG00000087690 ENSMUST00000153253 Gm16031 antisense Interval_56836 chr14 122353085 122353409 + 0 NA intron (ENSMUSG00000025545.10, intron 2 of 7) protein_coding-intron (ENSMUSG00000025545.10, intron 2 of 7) 34913 ENSMUSG00000095311.1 ENSMUSG00000095311 ENSMUST00000175481 Gm25464 snRNA Interval_30720 chr11 96113813 96114771 + 0 NA Intergenic Intergenic -2330 ENSMUSG00000006056.13 ENSMUSG00000006056 ENSMUST00000097162 Calcoco2 protein_coding Interval_119704 chr4 139336643 139338467 + 0 NA promoter-TSS (ENSMUSG00000087943.1) miRNA-promoter-TSS (ENSMUSG00000087943.1) -375 ENSMUSG00000118507.1 ENSMUSG00000118507 ENSMUST00000239093 AL807811.1 unprocessed_pseudogene Interval_131469 chr5 137421245 137421437 + 0 NA intron (ENSMUSG00000079173.11, intron 42 of 86) protein_coding-intron (ENSMUSG00000079173.11, intron 43 of 87) -11646 ENSMUSG00000106476.1 ENSMUSG00000106476 ENSMUST00000196458 Rpl36-ps9 processed_pseudogene Interval_169640 chr9 99636872 99637913 + 0 NA exon (ENSMUSG00000037784.14, exon 2 of 16) protein_coding-exon (ENSMUSG00000037784.14, exon 2 of 16) -12824 ENSMUSG00000037784.14 ENSMUSG00000037784 ENSMUST00000190893 Dzip1l protein_coding Interval_135272 chr6 37966366 37967614 + 0 NA TTS (ENSMUSG00000029833.17) protein_coding-TTS (ENSMUSG00000029833.17) 51621 ENSMUSG00000029830.15 ENSMUSG00000029830 ENSMUST00000040486 Svopl protein_coding Interval_147740 chr7 73290919 73292093 + 0 NA Intergenic Intergenic -19024 ENSMUSG00000108530.1 ENSMUSG00000108530 ENSMUST00000205600 4930429H19Rik lincRNA Interval_142667 chr6 144916633 144917779 + 0 NA Intergenic Intergenic -113574 ENSMUSG00000087850.1 ENSMUSG00000087850 ENSMUST00000157225 Gm22792 snoRNA Interval_66625 chr16 35723531 35724551 + 0 NA intron (ENSMUSG00000022848.8, intron 4 of 7) protein_coding-intron (ENSMUSG00000022848.8, intron 5 of 8) -1808 ENSMUSG00000087793.1 ENSMUSG00000087793 ENSMUST00000157168 Gm25967 snoRNA Interval_71338 chr17 22393660 22394904 + 0 NA Intergenic Intergenic 32829 ENSMUSG00000044501.17 ENSMUSG00000044501 ENSMUST00000121315 Zfp758 protein_coding Interval_51227 chr14 25338358 25339585 + 0 NA intron (ENSMUSG00000097601.2, intron 1 of 3) lincRNA-intron (ENSMUSG00000097601.2, intron 1 of 3) 40638 ENSMUSG00000097601.2 ENSMUSG00000097601 ENSMUST00000181582 Gm26660 lincRNA Interval_29413 chr11 83814833 83816246 + 0 NA Intergenic Intergenic 15075 ENSMUSG00000081342.1 ENSMUSG00000081342 ENSMUST00000122379 Gm11434 processed_pseudogene Interval_55679 chr14 98958947 98959595 + 0 NA Intergenic Intergenic 35047 ENSMUSG00000060377.4 ENSMUSG00000060377 ENSMUST00000081987 Rpl36a-ps1 protein_coding Interval_93538 chr2 73910598 73911849 + 0 NA promoter-TSS (ENSMUSG00000018770.9) protein_coding-promoter-TSS (ENSMUSG00000018770.9) 68 ENSMUSG00000018770.9 ENSMUSG00000018770 ENSMUST00000155474 Atp5g3 protein_coding Interval_7960 chr1 134854322 134854794 + 0 NA intron (ENSMUSG00000073557.12, intron 13 of 24) protein_coding-intron (ENSMUSG00000073557.12, intron 13 of 23) 20416 ENSMUSG00000101168.1 ENSMUSG00000101168 ENSMUST00000188123 Gm28892 antisense Interval_151546 chr7 123440764 123441406 + 0 NA Intergenic Intergenic 13225 ENSMUSG00000030763.7 ENSMUSG00000030763 ENSMUST00000206727 Lcmt1 protein_coding Interval_41222 chr12 111913837 111914619 + 0 NA Intergenic Intergenic -6609 ENSMUSG00000021285.15 ENSMUSG00000021285 ENSMUST00000220927 Ppp1r13b protein_coding Interval_113535 chr4 55676873 55677138 + 0 NA Intergenic Intergenic 71856 ENSMUSG00000085375.1 ENSMUSG00000085375 ENSMUST00000123620 Gm12506 lincRNA Interval_3552 chr1 59533654 59533936 + 0 NA intron (ENSMUSG00000099811.6, intron 2 of 2) protein_coding-intron (ENSMUSG00000047361.16, intron 2 of 19) 3434 ENSMUSG00000101409.1 ENSMUSG00000101409 ENSMUST00000186973 1700122D07Rik antisense Interval_47553 chr13 88201840 88202247 + 0 NA Intergenic Intergenic -16587 ENSMUSG00000098213.1 ENSMUSG00000098213 ENSMUST00000183033 Gm27044 processed_pseudogene Interval_87178 chr19 46641479 46642007 + 0 NA intron (ENSMUSG00000047731.17, intron 2 of 3) protein_coding-intron (ENSMUSG00000047731.17, intron 2 of 4) 24383 ENSMUSG00000118040.1 ENSMUSG00000118040 ENSMUST00000238131 Gm36602 lincRNA Interval_43859 chr13 37638660 37638927 + 0 NA intron (ENSMUSG00000114355.1, intron 6 of 6) lincRNA-intron (ENSMUSG00000114355.1, intron 6 of 6) 9443 ENSMUSG00000114355.1 ENSMUSG00000114355 ENSMUST00000225532 Gm40916 lincRNA Interval_41911 chr13 4257285 4257662 + 0 NA Intergenic Intergenic 8738 ENSMUSG00000086265.1 ENSMUSG00000086265 ENSMUST00000132531 Marcksl1-ps4 processed_pseudogene Interval_65542 chr16 23179086 23179978 + 0 NA promoter-TSS (ENSMUSG00000084299.3) processed_pseudogene-promoter-TSS (ENSMUSG00000084299.3) -24 ENSMUSG00000084299.3 ENSMUSG00000084299 ENSMUST00000119199 Gm6630 processed_pseudogene Interval_45991 chr13 59840560 59841467 + 0 NA Intergenic Intergenic 17747 ENSMUSG00000114354.1 ENSMUSG00000114354 ENSMUST00000224737 Gm34961 lincRNA Interval_48946 chr13 105377123 105377576 + 0 NA Intergenic Intergenic -66290 ENSMUSG00000021721.5 ENSMUSG00000021721 ENSMUST00000022235 Htr1a protein_coding Interval_61322 chr15 80839867 80840097 + 0 NA intron (ENSMUSG00000047888.10, intron 1 of 17) protein_coding-intron (ENSMUSG00000047888.10, intron 4 of 24) -83082 ENSMUSG00000047888.10 ENSMUSG00000047888 ENSMUST00000228525 Tnrc6b protein_coding Interval_135671 chr6 42860392 42860995 + 0 NA Intergenic Intergenic 26309 ENSMUSG00000049168.9 ENSMUSG00000049168 ENSMUST00000050729 Olfr449 protein_coding Interval_64527 chr16 13076114 13076682 + 0 NA Intergenic Intergenic -55993 ENSMUSG00000022545.13 ENSMUSG00000022545 ENSMUST00000156393 Ercc4 protein_coding Interval_70933 chr17 16219384 16221495 + 0 NA Intergenic Intergenic -56875 ENSMUSG00000116899.1 ENSMUSG00000116899 ENSMUST00000231616 Gm49777 processed_pseudogene Interval_111194 chr4 14614179 14614493 + 0 NA intron (ENSMUSG00000040569.13, intron 1 of 3) protein_coding-intron (ENSMUSG00000040569.13, intron 2 of 18) 7161 ENSMUSG00000040569.13 ENSMUSG00000040569 ENSMUST00000143105 Slc26a7 protein_coding Interval_160830 chr8 113235225 113235488 + 0 NA Intergenic Intergenic 168094 ENSMUSG00000110541.1 ENSMUSG00000110541 ENSMUST00000212238 Gm10280 lincRNA Interval_60846 chr15 77115225 77115695 + 0 NA TTS (ENSMUSG00000033565.18) protein_coding-TTS (ENSMUSG00000033565.18) 342 ENSMUSG00000116298.1 ENSMUSG00000116298 ENSMUST00000230697 4833412C15Rik TEC Interval_110258 chr3 155038949 155040108 + 0 NA intron (ENSMUSG00000040086.13, intron 2 of 4) protein_coding-intron (ENSMUSG00000040086.13, intron 2 of 24) 15822 ENSMUSG00000040086.13 ENSMUSG00000040086 ENSMUST00000146952 Tnni3k protein_coding Interval_50364 chr14 12092485 12092969 + 0 NA intron (ENSMUSG00000021745.14, intron 2 of 3) protein_coding-intron (ENSMUSG00000021745.14, intron 6 of 29) 59857 ENSMUSG00000114246.1 ENSMUSG00000114246 ENSMUST00000225204 Gm48603 TEC Interval_119303 chr4 136742314 136742653 + 0 NA intron (ENSMUSG00000028664.14, intron 3 of 15) protein_coding-intron (ENSMUSG00000028664.14, intron 3 of 15) -48443 ENSMUSG00000028664.14 ENSMUSG00000028664 ENSMUST00000144573 Ephb2 protein_coding Interval_140893 chr6 122632951 122633823 + 0 NA Intergenic Intergenic 6634 ENSMUSG00000046323.8 ENSMUSG00000046323 ENSMUST00000123429 Dppa3 protein_coding Interval_92691 chr2 62660649 62660837 + 0 NA Intergenic Intergenic 9627 ENSMUSG00000081817.1 ENSMUSG00000081817 ENSMUST00000120183 Gm13590 processed_pseudogene Interval_142115 chr6 137252153 137253598 + 0 NA intron (ENSMUSG00000030223.14, intron 1 of 2) protein_coding-intron (ENSMUSG00000030223.14, intron 1 of 26) -105946 ENSMUSG00000107567.1 ENSMUSG00000107567 ENSMUST00000203679 4930480K02Rik TEC Interval_53184 chr14 54989710 54989931 + 0 NA intron (ENSMUSG00000053093.16, intron 12 of 40) protein_coding-intron (ENSMUSG00000053093.16, intron 12 of 40) 3871 ENSMUSG00000053093.16 ENSMUSG00000053093 ENSMUST00000226424 Myh7 protein_coding Interval_70218 chr17 6775168 6775535 + 0 NA intron (ENSMUSG00000052397.8, intron 1 of 12) protein_coding-intron (ENSMUSG00000052397.8, intron 1 of 12) -15442 ENSMUSG00000116893.1 ENSMUSG00000116893 ENSMUST00000231691 Gm49717 processed_pseudogene Interval_100823 chr2 172731512 172732112 + 0 NA Intergenic Intergenic 132529 ENSMUSG00000093160.1 ENSMUSG00000093160 ENSMUST00000175419 Gm22773 miRNA Interval_148025 chr7 78415861 78416853 + 0 NA intron (ENSMUSG00000059146.12, intron 3 of 3) protein_coding-intron (ENSMUSG00000059146.12, intron 11 of 16) 158875 ENSMUSG00000108390.1 ENSMUSG00000108390 ENSMUST00000206774 Gm39038 sense_intronic Interval_30381 chr11 93995151 93997366 + 0 NA exon (ENSMUSG00000020859.16, exon 1 of 29) protein_coding-exon (ENSMUSG00000020859.16, exon 1 of 29) -27737 ENSMUSG00000037601.11 ENSMUSG00000037601 ENSMUST00000107844 Nme1 protein_coding Interval_18992 chr10 93611544 93612037 + 0 NA Intergenic Intergenic -7072 ENSMUSG00000111366.1 ENSMUSG00000111366 ENSMUST00000213334 Gm47156 lincRNA Interval_63630 chr15 102441974 102443317 + 0 NA Intergenic Intergenic -2803 ENSMUSG00000023047.11 ENSMUSG00000023047 ENSMUST00000161376 Amhr2 protein_coding Interval_122789 chr5 25515858 25517416 + 0 NA exon (ENSMUSG00000038044.8, exon 1 of 1) protein_coding-exon (ENSMUSG00000038044.8, exon 1 of 1) 570 ENSMUSG00000038044.8 ENSMUSG00000038044 ENSMUST00000045016 Cct8l1 protein_coding Interval_78945 chr18 22323858 22325550 + 0 NA Intergenic Intergenic -19542 ENSMUSG00000045215.17 ENSMUSG00000045215 ENSMUST00000097655 Asxl3 protein_coding Interval_126592 chr5 90568007 90568257 + 0 NA intron (ENSMUSG00000070690.7, intron 4 of 7) protein_coding-intron (ENSMUSG00000070690.7, intron 4 of 13) 6915 ENSMUSG00000070690.7 ENSMUSG00000070690 ENSMUST00000200765 Albfm1 protein_coding Interval_133564 chr6 6859447 6861443 + 0 NA intron (ENSMUSG00000090063.6, intron 2 of 2) antisense-intron (ENSMUSG00000090063.6, intron 2 of 2) -3353 ENSMUSG00000029754.13 ENSMUSG00000029754 ENSMUST00000172943 Dlx6 protein_coding Interval_88525 chr2 5833191 5833431 + 0 NA promoter-TSS (ENSMUSG00000039128.13) protein_coding-promoter-TSS (ENSMUSG00000039128.13) -10192 ENSMUSG00000039128.13 ENSMUSG00000039128 ENSMUST00000150876 Cdc123 protein_coding Interval_64102 chr16 8364883 8365106 + 0 NA Intergenic Intergenic 28001 ENSMUSG00000089593.1 ENSMUSG00000089593 ENSMUST00000158968 Gm26159 snRNA Interval_88960 chr2 13558567 13559029 + 0 NA Intergenic Intergenic -14135 ENSMUSG00000026723.10 ENSMUSG00000026723 ENSMUST00000144957 Trdmt1 protein_coding Interval_59550 chr15 55221751 55222847 + 0 NA intron (ENSMUSG00000022419.16, intron 8 of 8) protein_coding-intron (ENSMUSG00000022419.16, intron 8 of 8) 40304 ENSMUSG00000095792.1 ENSMUSG00000095792 ENSMUST00000179457 Gm26296 snRNA Interval_113592 chr4 56883205 56883597 + 0 NA intron (ENSMUSG00000055296.14, intron 11 of 11) protein_coding-intron (ENSMUSG00000055296.14, intron 17 of 17) 11897 ENSMUSG00000065544.1 ENSMUSG00000065544 ENSMUST00000083610 Mir32 miRNA Interval_165973 chr9 55100993 55103767 + 0 NA Intergenic Intergenic -7010 ENSMUSG00000110793.1 ENSMUSG00000110793 ENSMUST00000216059 Gm7395 processed_pseudogene Interval_148364 chr7 80778489 80780002 + 0 NA intron (ENSMUSG00000030536.10, intron 2 of 13) protein_coding-intron (ENSMUSG00000030536.10, intron 2 of 37) 24018 ENSMUSG00000030536.10 ENSMUSG00000030536 ENSMUST00000205540 Iqgap1 protein_coding Interval_122764 chr5 25213560 25214176 + 0 NA intron (ENSMUSG00000028938.9, intron 7 of 8) protein_coding-intron (ENSMUSG00000028938.9, intron 7 of 8) -8036 ENSMUSG00000038072.14 ENSMUSG00000038072 ENSMUST00000114950 Galnt11 protein_coding Interval_120404 chr4 148397464 148397988 + 0 NA Intergenic Intergenic -38266 ENSMUSG00000086326.1 ENSMUSG00000086326 ENSMUST00000138802 Gm13200 lincRNA Interval_21254 chr10 127508280 127509604 + 0 NA TTS (ENSMUSG00000040287.9) protein_coding-TTS (ENSMUSG00000040287.9) 1717 ENSMUSG00000040287.9 ENSMUSG00000040287 ENSMUST00000162302 Stac3 protein_coding Interval_89636 chr2 23625614 23625915 + 0 NA Intergenic Intergenic -54454 ENSMUSG00000083729.1 ENSMUSG00000083729 ENSMUST00000121498 Sh3d2c-ps1 processed_pseudogene Interval_134640 chr6 30101632 30102642 + 0 NA intron (ENSMUSG00000058440.14, intron 3 of 8) protein_coding-intron (ENSMUSG00000058440.14, intron 3 of 9) 12242 ENSMUSG00000058440.14 ENSMUSG00000058440 ENSMUST00000132866 Nrf1 protein_coding Interval_1662 chr1 30867567 30868283 + 0 NA exon (ENSMUSG00000104315.1, exon 1 of 1) TEC-exon (ENSMUSG00000104315.1, exon 1 of 1) 613 ENSMUSG00000104315.1 ENSMUSG00000104315 ENSMUST00000192050 Gm37906 TEC Interval_52306 chr14 44455613 44455957 + 0 NA Intergenic Intergenic -3398 ENSMUSG00000115359.1 ENSMUSG00000115359 ENSMUST00000227020 Gm49779 lincRNA Interval_98577 chr2 153358813 153359258 + 0 NA intron (ENSMUSG00000042548.14, intron 3 of 11) protein_coding-intron (ENSMUSG00000042548.14, intron 4 of 12) -12962 ENSMUSG00000073236.4 ENSMUSG00000073236 ENSMUST00000139636 2500004C02Rik processed_transcript Interval_146023 chr7 43267238 43268195 + 0 NA Intergenic Intergenic 45578 ENSMUSG00000012640.16 ENSMUSG00000012640 ENSMUST00000135130 Zfp715 protein_coding Interval_63319 chr15 100281918 100282196 + 0 NA intron (ENSMUSG00000045631.10, intron 1 of 2) protein_coding-intron (ENSMUSG00000045631.10, intron 1 of 4) 1216 ENSMUSG00000045631.10 ENSMUSG00000045631 ENSMUST00000230901 Tmprss12 protein_coding Interval_158132 chr8 79076315 79076628 + 0 NA exon (ENSMUSG00000071064.15, exon 4 of 15) protein_coding-exon (ENSMUSG00000071064.15, exon 4 of 15) 47884 ENSMUSG00000071064.15 ENSMUSG00000071064 ENSMUST00000129613 Zfp827 protein_coding Interval_26302 chr11 55948312 55948839 + 0 NA intron (ENSMUSG00000086020.1, intron 1 of 4) antisense-intron (ENSMUSG00000086020.1, intron 1 of 4) 92435 ENSMUSG00000037393.2 ENSMUSG00000037393 ENSMUST00000037682 Nmur2 protein_coding Interval_39782 chr12 98211584 98213072 + 0 NA intron (ENSMUSG00000021003.10, intron 4 of 5) protein_coding-intron (ENSMUSG00000021003.10, intron 14 of 16) 4200 ENSMUSG00000021003.10 ENSMUSG00000021003 ENSMUST00000221322 Galc protein_coding Interval_15529 chr10 50801886 50802144 + 0 NA intron (ENSMUSG00000038774.9, intron 3 of 5) protein_coding-intron (ENSMUSG00000038774.9, intron 36 of 41) -11710 ENSMUSG00000112594.1 ENSMUSG00000112594 ENSMUST00000220349 Gm48333 processed_pseudogene Interval_118136 chr4 129147441 129147998 + 0 NA TTS (ENSMUSG00000040928.15) protein_coding-TTS (ENSMUSG00000040928.15) 10720 ENSMUSG00000001334.9 ENSMUSG00000001334 ENSMUST00000102600 Fndc5 protein_coding Interval_167521 chr9 70219442 70219966 + 0 NA intron (ENSMUSG00000032220.10, intron 1 of 17) protein_coding-intron (ENSMUSG00000032220.10, intron 1 of 27) 12354 ENSMUSG00000032220.10 ENSMUSG00000032220 ENSMUST00000034745 Myo1e protein_coding Interval_84143 chr19 7510703 7510951 + 0 NA TTS (ENSMUSG00000024759.14) protein_coding-TTS (ENSMUSG00000024759.14) 16632 ENSMUSG00000024759.14 ENSMUSG00000024759 ENSMUST00000236382 Atl3 protein_coding Interval_139490 chr6 100512566 100512916 + 0 NA Intergenic Intergenic 14226 ENSMUSG00000107663.1 ENSMUSG00000107663 ENSMUST00000203242 Gm44107 lincRNA Interval_123572 chr5 33548788 33549039 + 0 NA Intergenic Intergenic 80149 ENSMUSG00000037339.17 ENSMUSG00000037339 ENSMUST00000140043 Fam53a protein_coding Interval_48112 chr13 96188228 96189072 + 0 NA Intergenic Intergenic 55281 ENSMUSG00000100475.1 ENSMUSG00000100475 ENSMUST00000188138 Gm29543 lincRNA Interval_174607 chrX 159973943 159974289 + 0 NA TTS (ENSMUSG00000040990.17) protein_coding-TTS (ENSMUSG00000040990.17) -14317 ENSMUSG00000031303.8 ENSMUSG00000031303 ENSMUST00000033665 Map3k15 protein_coding Interval_81830 chr18 65075500 65076455 + 0 NA promoter-TSS (ENSMUSG00000024589.18) protein_coding-promoter-TSS (ENSMUSG00000024589.18) -7077 ENSMUSG00000024589.18 ENSMUSG00000024589 ENSMUST00000236100 Nedd4l protein_coding Interval_77957 chr18 6111738 6112015 + 0 NA exon (ENSMUSG00000041225.16, exon 3 of 19) protein_coding-exon (ENSMUSG00000041225.16, exon 3 of 19) 104 ENSMUSG00000041225.16 ENSMUSG00000041225 ENSMUST00000182572 Arhgap12 protein_coding Interval_138761 chr6 91682726 91684667 + 0 NA promoter-TSS (ENSMUSG00000030096.8) protein_coding-promoter-TSS (ENSMUSG00000030096.8) -4473 ENSMUSG00000108751.1 ENSMUSG00000108751 ENSMUST00000206576 Gm45217 TEC Interval_66744 chr16 36949762 36950244 + 0 NA intron (ENSMUSG00000022831.14, intron 4 of 8) protein_coding-intron (ENSMUSG00000022831.14, intron 5 of 13) 12716 ENSMUSG00000022831.14 ENSMUSG00000022831 ENSMUST00000163755 Hcls1 protein_coding Interval_114794 chr4 85315259 85315473 + 0 NA intron (ENSMUSG00000028488.15, intron 1 of 7) protein_coding-intron (ENSMUSG00000028488.15, intron 1 of 8) -60975 ENSMUSG00000028488.15 ENSMUSG00000028488 ENSMUST00000133109 Sh3gl2 protein_coding Interval_123851 chr5 35954388 35954682 + 0 NA intron (ENSMUSG00000029094.12, intron 6 of 14) protein_coding-intron (ENSMUSG00000029094.12, intron 6 of 16) -29653 ENSMUSG00000029094.12 ENSMUSG00000029094 ENSMUST00000201482 Afap1 protein_coding Interval_59471 chr15 53389243 53389468 + 0 NA Intergenic Intergenic 5436 ENSMUSG00000087805.2 ENSMUSG00000087805 ENSMUST00000157180 Gm27926 snRNA Interval_2018 chr1 35925849 35926454 + 0 NA Intergenic Intergenic -32768 ENSMUSG00000103096.1 ENSMUSG00000103096 ENSMUST00000191763 Gm8022 processed_pseudogene Interval_115163 chr4 92606113 92606965 + 0 NA Intergenic Intergenic 77988 ENSMUSG00000085209.1 ENSMUSG00000085209 ENSMUST00000130501 Gm12637 lincRNA Interval_158566 chr8 84542578 84543195 + 0 NA intron (ENSMUSG00000034656.18, intron 12 of 48) protein_coding-intron (ENSMUSG00000034656.18, intron 10 of 46) 74298 ENSMUSG00000086067.1 ENSMUSG00000086067 ENSMUST00000127527 Gm16183 antisense Interval_4938 chr1 82810938 82811970 + 0 NA Intergenic Intergenic -3986 ENSMUSG00000102280.1 ENSMUSG00000102280 ENSMUST00000192756 Gm36999 TEC Interval_83749 chr19 4384445 4385421 + 0 NA intron (ENSMUSG00000054611.17, intron 2 of 9) protein_coding-intron (ENSMUSG00000054611.17, intron 2 of 20) -54390 ENSMUSG00000087132.8 ENSMUSG00000087132 ENSMUST00000136632 A930001C03Rik processed_transcript Interval_103213 chr3 36862596 36863664 + 0 NA promoter-TSS (ENSMUSG00000037270.18) protein_coding-promoter-TSS (ENSMUSG00000037270.18) -6898 ENSMUSG00000037270.18 ENSMUSG00000037270 ENSMUST00000196036 4932438A13Rik protein_coding Interval_105427 chr3 86201766 86202446 + 0 NA Intergenic Intergenic 10690 ENSMUSG00000089394.1 ENSMUSG00000089394 ENSMUST00000158769 Gm23025 snRNA Interval_85322 chr19 24686081 24687106 + 0 NA intron (ENSMUSG00000041731.13, intron 5 of 5) protein_coding-intron (ENSMUSG00000041731.13, intron 10 of 10) 6777 ENSMUSG00000097950.1 ENSMUSG00000097950 ENSMUST00000182466 Gm17800 processed_pseudogene Interval_162505 chr9 3414320 3414705 + 0 NA intron (ENSMUSG00000025898.6, intron 3 of 7) protein_coding-intron (ENSMUSG00000025898.6, intron 3 of 17) 10424 ENSMUSG00000025898.6 ENSMUSG00000025898 ENSMUST00000212101 Cwf19l2 protein_coding Interval_139045 chr6 94551999 94552202 + 0 NA intron (ENSMUSG00000045100.11, intron 4 of 11) protein_coding-intron (ENSMUSG00000045100.11, intron 5 of 9) 51551 ENSMUSG00000045100.11 ENSMUSG00000045100 ENSMUST00000203484 Slc25a26 protein_coding Interval_86406 chr19 40275787 40276678 + 0 NA Intergenic Intergenic -6045 ENSMUSG00000117793.1 ENSMUSG00000117793 ENSMUST00000237233 Gm5693 processed_pseudogene Interval_65980 chr16 30674742 30674992 + 0 NA Intergenic Intergenic 75144 ENSMUSG00000046546.3 ENSMUSG00000046546 ENSMUST00000059078 Fam43a protein_coding Interval_51729 chr14 31687719 31688203 + 0 NA Intergenic Intergenic 46933 ENSMUSG00000021900.10 ENSMUSG00000021900 ENSMUST00000090147 Btd protein_coding Interval_10842 chr1 175903184 175903968 + 0 NA promoter-TSS (ENSMUSG00000094820.1) snRNA-promoter-TSS (ENSMUSG00000094820.1) -969 ENSMUSG00000094820.1 ENSMUSG00000094820 ENSMUST00000180129 Gm23805 snRNA Interval_53896 chr14 63177611 63178644 + 0 NA promoter-TSS (ENSMUSG00000021273.11) protein_coding-promoter-TSS (ENSMUSG00000021273.11) -13202 ENSMUSG00000021273.11 ENSMUSG00000021273 ENSMUST00000224267 Fdft1 protein_coding Interval_33215 chr11 115269535 115271004 + 0 NA intron (ENSMUSG00000018861.8, intron 7 of 11) protein_coding-intron (ENSMUSG00000018861.8, intron 7 of 11) -3026 ENSMUSG00000020734.13 ENSMUSG00000020734 ENSMUST00000106554 Grin2c protein_coding Interval_14514 chr10 34618372 34618913 + 0 NA Intergenic Intergenic 135110 ENSMUSG00000019779.15 ENSMUSG00000019779 ENSMUST00000215594 Frk protein_coding Interval_161865 chr8 123299409 123299824 + 0 NA intron (ENSMUSG00000032815.16, intron 3 of 6) protein_coding-intron (ENSMUSG00000032815.16, intron 15 of 42) -29320 ENSMUSG00000032815.16 ENSMUSG00000032815 ENSMUST00000150318 Fanca protein_coding Interval_109313 chr3 138851888 138852199 + 0 NA intron (ENSMUSG00000028152.10, intron 1 of 7) protein_coding-intron (ENSMUSG00000028152.10, intron 1 of 7) -22881 ENSMUSG00000086123.3 ENSMUSG00000086123 ENSMUST00000153140 Gm16060 processed_pseudogene Interval_92879 chr2 68009139 68009474 + 0 NA intron (ENSMUSG00000034780.6, intron 3 of 4) protein_coding-intron (ENSMUSG00000034780.6, intron 3 of 4) -72485 ENSMUSG00000081257.1 ENSMUSG00000081257 ENSMUST00000117875 Gm13607 processed_pseudogene Interval_4357 chr1 72960013 72960834 + 0 NA Intergenic Intergenic 55486 ENSMUSG00000026182.6 ENSMUSG00000026182 ENSMUST00000027374 Tnp1 protein_coding Interval_85335 chr19 24896714 24898131 + 0 NA Intergenic Intergenic 3775 ENSMUSG00000051490.3 ENSMUSG00000051490 ENSMUST00000058600 Foxd4 protein_coding Interval_112124 chr4 34847865 34848925 + 0 NA intron (ENSMUSG00000039967.14, intron 1 of 7) protein_coding-intron (ENSMUSG00000039967.14, intron 1 of 7) 5410 ENSMUSG00000082367.1 ENSMUSG00000082367 ENSMUST00000122250 Gm12363 processed_pseudogene Interval_133667 chr6 8278281 8278884 + 0 NA intron (ENSMUSG00000089862.8, intron 2 of 2) protein_coding-intron (ENSMUSG00000089862.8, intron 1 of 2) 19132 ENSMUSG00000107705.1 ENSMUSG00000107705 ENSMUST00000162564 Gm45062 protein_coding Interval_112041 chr4 33427829 33428077 + 0 NA intron (ENSMUSG00000028274.17, intron 13 of 15) protein_coding-intron (ENSMUSG00000028274.17, intron 13 of 15) -10128 ENSMUSG00000098310.1 ENSMUSG00000098310 ENSMUST00000183962 Mir8118 miRNA Interval_86214 chr19 37850212 37851113 + 0 NA Intergenic Intergenic -19608 ENSMUSG00000118115.1 ENSMUSG00000118115 ENSMUST00000237198 Gm4757 processed_pseudogene Interval_84444 chr19 10940100 10941972 + 0 NA TTS (ENSMUSG00000024732.7) protein_coding-TTS (ENSMUSG00000024732.7) 3876 ENSMUSG00000034117.3 ENSMUSG00000034117 ENSMUST00000037261 Ptgdr2 protein_coding Interval_117675 chr4 125497135 125497438 + 0 NA intron (ENSMUSG00000001985.9, intron 1 of 15) protein_coding-intron (ENSMUSG00000001985.9, intron 1 of 15) 6586 ENSMUSG00000001985.9 ENSMUSG00000001985 ENSMUST00000030676 Grik3 protein_coding Interval_70397 chr17 9754535 9755490 + 0 NA intron (ENSMUSG00000117264.1, intron 3 of 3) processed_transcript-intron (ENSMUSG00000117264.1, intron 3 of 3) 20854 ENSMUSG00000117264.1 ENSMUSG00000117264 ENSMUST00000233594 4930452A19Rik processed_transcript Interval_71033 chr17 17312306 17314023 + 0 NA intron (ENSMUSG00000072761.10, intron 1 of 3) lincRNA-intron (ENSMUSG00000072761.10, intron 1 of 3) 18721 ENSMUSG00000072761.10 ENSMUSG00000072761 ENSMUST00000105311 Gm6712 lincRNA Interval_43892 chr13 37880842 37881089 + 0 NA intron (ENSMUSG00000039087.17, intron 1 of 3) protein_coding-intron (ENSMUSG00000039087.17, intron 1 of 9) -66051 ENSMUSG00000039087.17 ENSMUSG00000039087 ENSMUST00000162849 Rreb1 protein_coding Interval_18263 chr10 84411597 84411968 + 0 NA intron (ENSMUSG00000020032.14, intron 1 of 6) protein_coding-intron (ENSMUSG00000020032.14, intron 1 of 6) -19394 ENSMUSG00000020032.14 ENSMUSG00000020032 ENSMUST00000129355 Nuak1 protein_coding Interval_174779 chrX 166514191 166514746 + 0 NA intron (ENSMUSG00000051224.13, intron 1 of 4) protein_coding-intron (ENSMUSG00000051224.13, intron 1 of 4) -11071 ENSMUSG00000051224.13 ENSMUSG00000051224 ENSMUST00000112187 Tceanc protein_coding Interval_145303 chr7 31526869 31527395 + 0 NA Intergenic Intergenic 19675 ENSMUSG00000099598.1 ENSMUSG00000099598 ENSMUST00000188974 Scgb2b28-ps unprocessed_pseudogene Interval_84825 chr19 17155985 17156440 + 0 NA intron (ENSMUSG00000039126.10, intron 1 of 8) protein_coding-intron (ENSMUSG00000039126.10, intron 9 of 19) 30565 ENSMUSG00000039126.10 ENSMUSG00000039126 ENSMUST00000224117 Prune2 protein_coding Interval_139423 chr6 100040584 100041740 + 0 NA Intergenic Intergenic -49947 ENSMUSG00000108151.1 ENSMUSG00000108151 ENSMUST00000204791 Gm33201 lincRNA Interval_92609 chr2 61455688 61456216 + 0 NA Intergenic Intergenic -36814 ENSMUSG00000088340.1 ENSMUSG00000088340 ENSMUST00000157715 Gm22338 snoRNA Interval_30494 chr11 94734319 94734664 + 0 NA Intergenic Intergenic -7291 ENSMUSG00000020870.7 ENSMUSG00000020870 ENSMUST00000188741 Cdc34b protein_coding Interval_97954 chr2 146093973 146094223 + 0 NA intron (ENSMUSG00000037143.17, intron 4 of 4) protein_coding-intron (ENSMUSG00000037143.17, intron 2 of 6) -120515 ENSMUSG00000037143.17 ENSMUSG00000037143 ENSMUST00000167179 Cfap61 protein_coding Interval_156357 chr8 47673439 47676084 + 0 NA promoter-TSS (ENSMUSG00000074357.3) bidirectional_promoter_lncRNA-promoter-TSS (ENSMUSG00000074357.3) -630 ENSMUSG00000074357.3 ENSMUSG00000074357 ENSMUST00000211481 AA386476 bidirectional_promoter_lncRNA Interval_86751 chr19 43611708 43613016 + 0 NA promoter-TSS (ENSMUSG00000044220.13) protein_coding-promoter-TSS (ENSMUSG00000044220.13) 37 ENSMUSG00000044220.13 ENSMUSG00000044220 ENSMUST00000057178 Nkx2-3 protein_coding Interval_74735 chr17 56224753 56226232 + 0 NA Intergenic Intergenic -6587 ENSMUSG00000001229.9 ENSMUSG00000001229 ENSMUST00000233586 Dpp9 protein_coding Interval_100192 chr2 167559464 167560214 + 0 NA intron (ENSMUSG00000085596.1, intron 2 of 3) processed_transcript-intron (ENSMUSG00000085596.1, intron 2 of 3) 6525 ENSMUSG00000085596.1 ENSMUSG00000085596 ENSMUST00000127006 Gm11476 processed_transcript Interval_44633 chr13 46820397 46821038 + 0 NA intron (ENSMUSG00000021375.11, intron 9 of 25) protein_coding-intron (ENSMUSG00000021375.11, intron 9 of 37) -11660 ENSMUSG00000021375.11 ENSMUSG00000021375 ENSMUST00000224923 Kif13a protein_coding Interval_110026 chr3 152582482 152582840 + 0 NA intron (ENSMUSG00000039058.11, intron 6 of 13) protein_coding-intron (ENSMUSG00000039058.11, intron 6 of 13) -55909 ENSMUSG00000039058.11 ENSMUSG00000039058 ENSMUST00000198552 Ak5 protein_coding Interval_4472 chr1 74414955 74415875 + 0 NA intron (ENSMUSG00000026175.12, intron 2 of 19) protein_coding-intron (ENSMUSG00000026175.12, intron 2 of 19) -8271 ENSMUSG00000026175.12 ENSMUSG00000026175 ENSMUST00000163018 Vil1 protein_coding Interval_135989 chr6 49267731 49268038 + 0 NA Intergenic Intergenic -3851 ENSMUSG00000029817.11 ENSMUSG00000029817 ENSMUST00000204013 Tra2a protein_coding Interval_99046 chr2 156839404 156841024 + 0 NA promoter-TSS (ENSMUSG00000087179.8) lincRNA-promoter-TSS (ENSMUSG00000087179.8) -322 ENSMUSG00000087179.8 ENSMUSG00000087179 ENSMUST00000134838 Gm14230 lincRNA Interval_167943 chr9 74846919 74847283 + 0 NA promoter-TSS (ENSMUSG00000066477.13) processed_transcript-promoter-TSS (ENSMUSG00000066477.13) -1362 ENSMUSG00000093662.2 ENSMUSG00000093662 ENSMUST00000160950 Gm20649 lincRNA Interval_151346 chr7 121312815 121313760 + 0 NA Intergenic Intergenic -53892 ENSMUSG00000108697.1 ENSMUSG00000108697 ENSMUST00000206668 4930486N12Rik TEC Interval_77613 chr17 93113291 93113563 + 0 NA Intergenic Intergenic -55085 ENSMUSG00000117591.1 ENSMUSG00000117591 ENSMUST00000234088 Gm49997 processed_pseudogene Interval_51233 chr14 25401600 25402648 + 0 NA intron (ENSMUSG00000087535.2, intron 2 of 3) antisense-intron (ENSMUSG00000087535.2, intron 2 of 3) -22515 ENSMUSG00000097601.2 ENSMUSG00000097601 ENSMUST00000181582 Gm26660 lincRNA Interval_79964 chr18 36308573 36309243 + 0 NA Intergenic Intergenic 10229 ENSMUSG00000110185.2 ENSMUSG00000110185 ENSMUST00000210490 Igip protein_coding Interval_46246 chr13 62926582 62927067 + 0 NA Intergenic Intergenic 22618 ENSMUSG00000113057.1 ENSMUSG00000113057 ENSMUST00000221723 Gm48812 lincRNA Interval_60701 chr15 76246433 76248255 + 0 NA promoter-TSS (ENSMUSG00000098625.1) miRNA-promoter-TSS (ENSMUSG00000098625.1) 574 ENSMUSG00000022564.7 ENSMUSG00000022564 ENSMUST00000229916 Grina protein_coding Interval_15910 chr10 59160317 59160900 + 0 NA intron (ENSMUSG00000019917.10, intron 9 of 9) protein_coding-intron (ENSMUSG00000019917.10, intron 9 of 9) -35091 ENSMUSG00000088744.1 ENSMUSG00000088744 ENSMUST00000158119 Gm23223 snoRNA Interval_39991 chr12 100301504 100301877 + 0 NA TTS (ENSMUSG00000033530.8) protein_coding-TTS (ENSMUSG00000033530.8) 11434 ENSMUSG00000113679.1 ENSMUSG00000113679 ENSMUST00000220721 Gm10432 processed_transcript Interval_53848 chr14 62735657 62735914 + 0 NA intron (ENSMUSG00000035161.7, intron 5 of 5) protein_coding-intron (ENSMUSG00000035161.7, intron 4 of 18) -30887 ENSMUSG00000035161.7 ENSMUSG00000035161 ENSMUST00000225193 Ints6 protein_coding Interval_53364 chr14 56675669 56675906 + 0 NA intron (ENSMUSG00000079184.10, intron 3 of 13) protein_coding-intron (ENSMUSG00000079184.10, intron 3 of 13) -7663 ENSMUSG00000110165.1 ENSMUSG00000110165 ENSMUST00000210920 Gm4032 transcribed_processed_pseudogene Interval_25245 chr11 45859587 45859794 + 0 NA intron (ENSMUSG00000006169.20, intron 1 of 11) protein_coding-intron (ENSMUSG00000006169.20, intron 1 of 11) -22707 ENSMUSG00000006169.20 ENSMUSG00000006169 ENSMUST00000133715 Clint1 protein_coding Interval_63334 chr15 100405684 100406357 + 0 NA TTS (ENSMUSG00000023030.16) protein_coding-TTS (ENSMUSG00000023030.16) -17173 ENSMUSG00000087444.1 ENSMUSG00000087444 ENSMUST00000148928 Gm5475 protein_coding Interval_63805 chr15 103550517 103550940 + 0 NA Intergenic Intergenic -12734 ENSMUSG00000022490.7 ENSMUSG00000022490 ENSMUST00000228813 Ppp1r1a protein_coding Interval_156872 chr8 61380648 61381525 + 0 NA exon (ENSMUSG00000109610.1, exon 1 of 1) processed_pseudogene-exon (ENSMUSG00000109610.1, exon 1 of 1) 301 ENSMUSG00000109610.1 ENSMUSG00000109610 ENSMUST00000210343 Gm7432 processed_pseudogene Interval_148557 chr7 82625094 82626193 + 0 NA Intergenic Intergenic 22853 ENSMUSG00000038570.15 ENSMUSG00000038570 ENSMUST00000126478 Saxo2 protein_coding Interval_83155 chr18 82313943 82314175 + 0 NA Intergenic Intergenic -24403 ENSMUSG00000058625.6 ENSMUSG00000058625 ENSMUST00000078739 Gm17383 processed_pseudogene Interval_75410 chr17 66416813 66417191 + 0 NA intron (ENSMUSG00000052105.17, intron 3 of 15) protein_coding-intron (ENSMUSG00000052105.17, intron 3 of 13) -3018 ENSMUSG00000093686.1 ENSMUSG00000093686 ENSMUST00000177415 Gm4705 processed_pseudogene Interval_164940 chr9 43261746 43262995 + 0 NA intron (ENSMUSG00000095385.3, intron 1 of 2) lincRNA-intron (ENSMUSG00000095385.3, intron 1 of 2) -2909 ENSMUSG00000095385.3 ENSMUSG00000095385 ENSMUST00000210037 D630033O11Rik lincRNA Interval_56699 chr14 121451043 121451485 + 0 NA TTS (ENSMUSG00000115123.1) lincRNA-TTS (ENSMUSG00000115123.1) 4498 ENSMUSG00000115123.1 ENSMUSG00000115123 ENSMUST00000227451 Gm33299 lincRNA Interval_110070 chr3 152958204 152958708 + 0 NA intron (ENSMUSG00000039047.17, intron 14 of 14) protein_coding-intron (ENSMUSG00000039037.5, intron 2 of 4) -6977 ENSMUSG00000105894.1 ENSMUSG00000105894 ENSMUST00000200608 Gm42710 TEC Interval_100490 chr2 169546472 169547539 + 0 NA Intergenic Intergenic 40740 ENSMUSG00000078912.2 ENSMUSG00000078912 ENSMUST00000109160 Gm11011 protein_coding Interval_96047 chr2 119421535 119421727 + 0 NA intron (ENSMUSG00000034154.15, intron 24 of 27) protein_coding-intron (ENSMUSG00000034154.15, intron 24 of 35) 18049 ENSMUSG00000034154.15 ENSMUSG00000034154 ENSMUST00000138707 Ino80 protein_coding Interval_123978 chr5 36977622 36978549 + 0 NA intron (ENSMUSG00000039474.13, intron 2 of 7) protein_coding-intron (ENSMUSG00000039474.13, intron 2 of 7) -1129 ENSMUSG00000039474.13 ENSMUSG00000039474 ENSMUST00000167937 Wfs1 protein_coding Interval_133797 chr6 12278720 12279492 + 0 NA Intergenic Intergenic 150480 ENSMUSG00000108209.1 ENSMUSG00000108209 ENSMUST00000203296 Gm32222 processed_pseudogene Interval_160581 chr8 110835641 110835878 + 0 NA intron (ENSMUSG00000033732.10, intron 8 of 12) protein_coding-intron (ENSMUSG00000033732.10, intron 8 of 25) 2857 ENSMUSG00000080396.1 ENSMUSG00000080396 ENSMUST00000116746 Snord111 snoRNA Interval_125398 chr5 66685975 66687166 + 0 NA intron (ENSMUSG00000029223.12, intron 2 of 2) protein_coding-intron (ENSMUSG00000029223.12, intron 8 of 8) -2312 ENSMUSG00000107300.1 ENSMUSG00000107300 ENSMUST00000202376 Gm43279 TEC Interval_6825 chr1 119899715 119900373 + 0 NA Intergenic Intergenic 2583 ENSMUSG00000100636.1 ENSMUSG00000100636 ENSMUST00000190750 Gm3551 processed_pseudogene Interval_51095 chr14 22647961 22648345 + 0 NA intron (ENSMUSG00000063458.13, intron 3 of 3) protein_coding-intron (ENSMUSG00000063458.13, intron 5 of 6) 51640 ENSMUSG00000063458.13 ENSMUSG00000063458 ENSMUST00000226003 Lrmda protein_coding Interval_116790 chr4 117312292 117313492 + 0 NA intron (ENSMUSG00000028677.19, intron 2 of 2) protein_coding-intron (ENSMUSG00000028677.19, intron 2 of 14) 16748 ENSMUSG00000085749.1 ENSMUSG00000085749 ENSMUST00000139618 Gm12843 antisense Interval_16410 chr10 62776237 62776910 + 0 NA TTS (ENSMUSG00000020074.7) protein_coding-TTS (ENSMUSG00000020074.7) 6614 ENSMUSG00000112806.1 ENSMUSG00000112806 ENSMUST00000218355 Gm48146 TEC Interval_30998 chr11 97635177 97636274 + 0 NA Intergenic Intergenic -6023 ENSMUSG00000043439.5 ENSMUSG00000043439 ENSMUST00000052281 Epop protein_coding Interval_127809 chr5 107971720 107972617 + 0 NA intron (ENSMUSG00000029270.10, intron 1 of 4) protein_coding-intron (ENSMUSG00000029270.10, intron 1 of 4) 830 ENSMUSG00000029270.10 ENSMUSG00000029270 ENSMUST00000153172 Dipk1a protein_coding Interval_51629 chr14 30901629 30901840 + 0 NA exon (ENSMUSG00000021922.17, exon 22 of 22) protein_coding-exon (ENSMUSG00000021922.17, exon 22 of 22) 2573 ENSMUSG00000021922.17 ENSMUSG00000021922 ENSMUST00000227899 Itih4 protein_coding Interval_14508 chr10 34479641 34480005 + 0 NA Intergenic Intergenic -3709 ENSMUSG00000019779.15 ENSMUSG00000019779 ENSMUST00000215594 Frk protein_coding Interval_109176 chr3 137640858 137641118 + 0 NA Intergenic Intergenic 3793 ENSMUSG00000105325.1 ENSMUSG00000105325 ENSMUST00000198288 Gm30946 processed_pseudogene Interval_143703 chr7 15826249 15826566 + 0 NA promoter-TSS (ENSMUSG00000092576.3) lincRNA-promoter-TSS (ENSMUSG00000092576.3) -592 ENSMUSG00000092576.3 ENSMUSG00000092576 ENSMUST00000173825 Obox4-ps35 lincRNA Interval_34656 chr12 8401721 8402311 + 0 NA Intergenic Intergenic 7807 ENSMUSG00000112452.1 ENSMUSG00000112452 ENSMUST00000218567 Gm48075 lincRNA Interval_9950 chr1 164327562 164327795 + 0 NA intron (ENSMUSG00000026575.15, intron 4 of 15) protein_coding-intron (ENSMUSG00000026575.15, intron 1 of 7) 19951 ENSMUSG00000026575.15 ENSMUSG00000026575 ENSMUST00000192710 Nme7 protein_coding Interval_169587 chr9 99311072 99311263 + 0 NA TTS (ENSMUSG00000103857.1) TEC-TTS (ENSMUSG00000103857.1) 3584 ENSMUSG00000103857.1 ENSMUSG00000103857 ENSMUST00000195185 Gm37249 TEC Interval_171039 chr9 113904432 113904988 + 0 NA intron (ENSMUSG00000033392.16, intron 29 of 34) protein_coding-intron (ENSMUSG00000033392.16, intron 27 of 32) -26919 ENSMUSG00000009741.15 ENSMUSG00000009741 ENSMUST00000216293 Ubp1 protein_coding Interval_124061 chr5 37931800 37932015 + 0 NA Intergenic Intergenic 37557 ENSMUSG00000106718.1 ENSMUSG00000106718 ENSMUST00000201327 Gm20052 lincRNA Interval_37903 chr12 72945114 72946387 + 0 NA promoter-TSS (ENSMUSG00000097010.2) lincRNA-promoter-TSS (ENSMUSG00000097010.2) -65 ENSMUSG00000097010.2 ENSMUSG00000097010 ENSMUST00000223049 Gm26709 lincRNA Interval_167134 chr9 65569643 65569935 + 0 NA intron (ENSMUSG00000050721.9, intron 3 of 6) protein_coding-intron (ENSMUSG00000050721.9, intron 2 of 5) 9245 ENSMUSG00000050721.9 ENSMUSG00000050721 ENSMUST00000213652 Plekho2 protein_coding Interval_69525 chr16 94041329 94041644 + 0 NA Intergenic Intergenic 25544 ENSMUSG00000116939.1 ENSMUSG00000116939 ENSMUST00000232441 Gm49619 processed_pseudogene Interval_130606 chr5 129163620 129164678 + 0 NA intron (ENSMUSG00000044017.16, intron 14 of 24) protein_coding-intron (ENSMUSG00000044017.16, intron 15 of 25) -35632 ENSMUSG00000060419.8 ENSMUSG00000060419 ENSMUST00000140155 Rps16-ps2 processed_pseudogene Interval_66013 chr16 30956900 30957430 + 0 NA TTS (ENSMUSG00000047434.14) protein_coding-TTS (ENSMUSG00000047434.14) 16353 ENSMUSG00000087605.1 ENSMUSG00000087605 ENSMUST00000123905 Gm15742 sense_intronic Interval_96504 chr2 125135882 125136790 + 0 NA promoter-TSS (ENSMUSG00000074872.3) protein_coding-promoter-TSS (ENSMUSG00000074872.3) -297 ENSMUSG00000074872.3 ENSMUSG00000074872 ENSMUST00000238377 Ctxn2 protein_coding Interval_21387 chr10 128309630 128309954 + 0 NA intron (ENSMUSG00000005682.9, intron 6 of 25) protein_coding-intron (ENSMUSG00000005682.9, intron 6 of 25) 6416 ENSMUSG00000005682.9 ENSMUSG00000005682 ENSMUST00000219255 Pan2 protein_coding Interval_82988 chr18 80192073 80194270 + 0 NA exon (ENSMUSG00000118061.1, exon 5 of 5) lincRNA-exon (ENSMUSG00000118061.1, exon 5 of 5) 2032 ENSMUSG00000024570.7 ENSMUSG00000024570 ENSMUST00000236460 Rbfa protein_coding Interval_105924 chr3 90117788 90118205 + 0 NA intron (ENSMUSG00000027939.11, intron 3 of 39) protein_coding-intron (ENSMUSG00000027939.11, intron 3 of 39) -8539 ENSMUSG00000064930.1 ENSMUSG00000064930 ENSMUST00000082996 Gm23723 snoRNA Interval_168410 chr9 80104296 80104496 + 0 NA intron (ENSMUSG00000034252.14, intron 4 of 7) protein_coding-intron (ENSMUSG00000034252.14, intron 6 of 22) 17541 ENSMUSG00000084917.3 ENSMUSG00000084917 ENSMUST00000165458 Gm17477 antisense Interval_98120 chr2 148394894 148396520 + 0 NA exon (ENSMUSG00000037014.4, exon 1 of 1) protein_coding-exon (ENSMUSG00000037014.4, exon 1 of 1) 363 ENSMUSG00000037014.4 ENSMUSG00000037014 ENSMUST00000109962 Sstr4 protein_coding Interval_10986 chr1 177764025 177764365 + 0 NA exon (ENSMUSG00000015961.8, exon 13 of 13) protein_coding-exon (ENSMUSG00000015961.8, exon 13 of 13) -22661 ENSMUSG00000089657.1 ENSMUSG00000089657 ENSMUST00000161442 Gm16585 processed_pseudogene Interval_102503 chr3 27244617 27245267 + 0 NA TTS (ENSMUSG00000027698.14) protein_coding-TTS (ENSMUSG00000027698.14) -33118 ENSMUSG00000102186.1 ENSMUSG00000102186 ENSMUST00000193346 Gm37191 processed_pseudogene Interval_34030 chr11 120109370 120111421 + 0 NA promoter-TSS (ENSMUSG00000061306.16) protein_coding-promoter-TSS (ENSMUSG00000061306.16) 11296 ENSMUSG00000078572.3 ENSMUSG00000078572 ENSMUST00000186913 Ndufaf8 protein_coding Interval_145195 chr7 30578474 30578709 + 0 NA exon (ENSMUSG00000006307.16, exon 22 of 37) protein_coding-exon (ENSMUSG00000006307.16, exon 22 of 37) -1427 ENSMUSG00000006307.16 ENSMUSG00000006307 ENSMUST00000125372 Kmt2b protein_coding Interval_34778 chr12 11058552 11059080 + 0 NA intron (ENSMUSG00000113620.1, intron 2 of 2) lincRNA-intron (ENSMUSG00000113620.1, intron 2 of 2) 11003 ENSMUSG00000113620.1 ENSMUSG00000113620 ENSMUST00000222157 7420701I03Rik lincRNA Interval_38178 chr12 76214681 76215576 + 0 NA intron (ENSMUSG00000021056.8, intron 3 of 3) protein_coding-intron (ENSMUSG00000021056.8, intron 5 of 9) 14336 ENSMUSG00000021056.8 ENSMUSG00000021056 ENSMUST00000219327 Tex21 protein_coding Interval_135608 chr6 41542944 41544167 + 0 NA promoter-TSS (ENSMUSG00000076497.1) TR_J_gene-promoter-TSS (ENSMUSG00000076497.1) -43 ENSMUSG00000090818.1 ENSMUSG00000090818 ENSMUST00000169595 Trbj2-6 TR_J_pseudogene Interval_119000 chr4 134940931 134941178 + 0 NA Intergenic Intergenic 10152 ENSMUSG00000028821.8 ENSMUSG00000028821 ENSMUST00000144037 Syf2 protein_coding Interval_104213 chr3 60615220 60616052 + 0 NA exon (ENSMUSG00000027763.13, exon 6 of 10) protein_coding-exon (ENSMUSG00000027763.13, exon 6 of 10) 11252 ENSMUSG00000104125.1 ENSMUSG00000104125 ENSMUST00000195434 Gm37488 TEC Interval_29266 chr11 82462068 82462256 + 0 NA Intergenic Intergenic 23905 ENSMUSG00000020701.12 ENSMUSG00000020701 ENSMUST00000202598 Tmem132e protein_coding Interval_149086 chr7 93006680 93006970 + 0 NA promoter-TSS (ENSMUSG00000097644.1) sense_overlapping-promoter-TSS (ENSMUSG00000097644.1) -157 ENSMUSG00000097644.1 ENSMUSG00000097644 ENSMUST00000181886 Gm26862 sense_overlapping Interval_99993 chr2 166290919 166291754 + 0 NA intron (ENSMUSG00000084840.1, intron 2 of 2) lincRNA-intron (ENSMUSG00000084840.1, intron 2 of 2) 17428 ENSMUSG00000084840.1 ENSMUSG00000084840 ENSMUST00000152987 Gm11468 lincRNA Interval_110621 chr4 4895307 4896368 + 0 NA Intergenic Intergenic 83037 ENSMUSG00000083228.1 ENSMUSG00000083228 ENSMUST00000118541 Gm11779 processed_pseudogene Interval_99690 chr2 164305367 164306048 + 0 NA Intergenic Intergenic -11044 ENSMUSG00000017000.2 ENSMUSG00000017000 ENSMUST00000017144 Svs6 protein_coding Interval_41343 chr12 112950015 112950767 + 0 NA intron (ENSMUSG00000097476.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000097476.1, intron 1 of 1) 121 ENSMUSG00000097476.1 ENSMUSG00000097476 ENSMUST00000181436 Gm26583 lincRNA Interval_66624 chr16 35715725 35716885 + 0 NA intron (ENSMUSG00000022848.8, intron 6 of 7) protein_coding-intron (ENSMUSG00000022848.8, intron 7 of 8) 5928 ENSMUSG00000087793.1 ENSMUSG00000087793 ENSMUST00000157168 Gm25967 snoRNA Interval_149565 chr7 99618233 99619709 + 0 NA Intergenic Intergenic -6965 ENSMUSG00000097974.1 ENSMUSG00000097974 ENSMUST00000182342 Gm10605 lincRNA Interval_110722 chr4 7114464 7114698 + 0 NA Intergenic Intergenic -75067 ENSMUSG00000083023.1 ENSMUSG00000083023 ENSMUST00000121663 Gm11804 processed_pseudogene Interval_144450 chr7 25230918 25231263 + 0 NA TTS (ENSMUSG00000090330.2) antisense-TTS (ENSMUSG00000090330.2) 154 ENSMUSG00000057177.12 ENSMUSG00000057177 ENSMUST00000206654 Gsk3a protein_coding Interval_34480 chr12 4547419 4547754 + 0 NA Intergenic Intergenic 21952 ENSMUSG00000112819.1 ENSMUSG00000112819 ENSMUST00000220320 Gm46332 lincRNA Interval_119975 chr4 141186064 141187273 + 0 NA intron (ENSMUSG00000028920.9, intron 2 of 3) protein_coding-intron (ENSMUSG00000028920.9, intron 4 of 9) -31978 ENSMUSG00000073733.4 ENSMUSG00000073733 ENSMUST00000151475 Cplane2 protein_coding Interval_160735 chr8 111888005 111888477 + 0 NA TTS (ENSMUSG00000031952.5) protein_coding-TTS (ENSMUSG00000031952.5) 8937 ENSMUSG00000089000.1 ENSMUSG00000089000 ENSMUST00000158375 Gm23853 snRNA Interval_77669 chr17 93954379 93954650 + 0 NA Intergenic Intergenic 177757 ENSMUSG00000117543.1 ENSMUSG00000117543 ENSMUST00000235005 Gm50004 processed_pseudogene Interval_50343 chr14 11942267 11942584 + 0 NA intron (ENSMUSG00000021745.14, intron 2 of 3) protein_coding-intron (ENSMUSG00000021745.14, intron 2 of 29) 37746 ENSMUSG00000114267.1 ENSMUSG00000114267 ENSMUST00000225771 Gm48600 TEC Interval_158556 chr8 84447882 84448219 + 0 NA intron (ENSMUSG00000034656.18, intron 3 of 48) protein_coding-intron (ENSMUSG00000034656.18, intron 1 of 46) -67469 ENSMUSG00000064392.1 ENSMUSG00000064392 ENSMUST00000082458 Gm23626 snoRNA Interval_142659 chr6 144849080 144849713 + 0 NA Intergenic Intergenic -45764 ENSMUSG00000087850.1 ENSMUSG00000087850 ENSMUST00000157225 Gm22792 snoRNA Interval_173447 chrX 93922021 93923252 + 0 NA promoter-TSS (ENSMUSG00000082728.1) processed_pseudogene-promoter-TSS (ENSMUSG00000082728.1) -674 ENSMUSG00000082728.1 ENSMUSG00000082728 ENSMUST00000117999 Supt20-ps processed_pseudogene Interval_160099 chr8 106414970 106416108 + 0 NA exon (ENSMUSG00000031907.9, exon 1 of 4) protein_coding-exon (ENSMUSG00000031907.9, exon 1 of 4) 212 ENSMUSG00000031907.9 ENSMUSG00000031907 ENSMUST00000212874 Zfp90 protein_coding Interval_22237 chr11 7487603 7487804 + 0 NA Intergenic Intergenic -197329 ENSMUSG00000087637.1 ENSMUSG00000087637 ENSMUST00000149481 Gm11986 lincRNA Interval_108447 chr3 127301616 127302603 + 0 NA intron (ENSMUSG00000032826.19, intron 2 of 15) protein_coding-intron (ENSMUSG00000032826.19, intron 2 of 14) -2436 ENSMUSG00000106446.1 ENSMUSG00000106446 ENSMUST00000196407 Gm42970 TEC Interval_108415 chr3 126842812 126843013 + 0 NA TTS (ENSMUSG00000053819.16) protein_coding-TTS (ENSMUSG00000053819.16) 96779 ENSMUSG00000105553.1 ENSMUSG00000105553 ENSMUST00000196636 Gm42514 TEC Interval_120761 chr4 150505111 150505646 + 0 NA intron (ENSMUSG00000039852.17, intron 8 of 22) protein_coding-intron (ENSMUSG00000039852.17, intron 2 of 16) 63166 ENSMUSG00000085213.1 ENSMUSG00000085213 ENSMUST00000128800 Gm13091 antisense Interval_41614 chr12 117018042 117018764 + 0 NA intron (ENSMUSG00000056553.14, intron 11 of 22) protein_coding-intron (ENSMUSG00000056553.14, intron 11 of 22) 132812 ENSMUSG00000099907.1 ENSMUSG00000099907 ENSMUST00000186114 Gm10421 processed_transcript Interval_82020 chr18 67236769 67237051 + 0 NA intron (ENSMUSG00000062526.4, intron 3 of 4) protein_coding-intron (ENSMUSG00000062526.4, intron 3 of 10) 8531 ENSMUSG00000062526.4 ENSMUSG00000062526 ENSMUST00000237631 Mppe1 protein_coding Interval_31619 chr11 101763355 101764496 + 0 NA exon (ENSMUSG00000034931.15, exon 20 of 23) protein_coding-exon (ENSMUSG00000034931.15, exon 20 of 23) 21385 ENSMUSG00000017724.14 ENSMUSG00000017724 ENSMUST00000154512 Etv4 protein_coding Interval_144344 chr7 24599315 24600065 + 0 NA intron (ENSMUSG00000064254.6, intron 4 of 7) protein_coding-intron (ENSMUSG00000064254.6, intron 4 of 7) -11073 ENSMUSG00000074277.4 ENSMUSG00000074277 ENSMUST00000205330 Phldb3 protein_coding Interval_92316 chr2 58627913 58628224 + 0 NA intron (ENSMUSG00000026839.17, intron 1 of 7) protein_coding-intron (ENSMUSG00000026839.17, intron 1 of 7) -5013 ENSMUSG00000026839.17 ENSMUSG00000026839 ENSMUST00000128864 Upp2 protein_coding Interval_138632 chr6 90571619 90572048 + 0 NA TTS (ENSMUSG00000030088.15) protein_coding-TTS (ENSMUSG00000030088.15) 20985 ENSMUSG00000030088.15 ENSMUSG00000030088 ENSMUST00000137669 Aldh1l1 protein_coding Interval_65057 chr16 18744700 18745323 + 0 NA Intergenic Intergenic -31836 ENSMUSG00000041378.2 ENSMUSG00000041378 ENSMUST00000043577 Cldn5 protein_coding Interval_34800 chr12 11321291 11321505 + 0 NA Intergenic Intergenic 21511 ENSMUSG00000098879.1 ENSMUSG00000098879 ENSMUST00000184262 Mir7675 miRNA Interval_35436 chr12 21725402 21725968 + 0 NA Intergenic Intergenic 51022 ENSMUSG00000091105.1 ENSMUSG00000091105 ENSMUST00000164169 Mrto4-ps2 processed_pseudogene Interval_24346 chr11 32592454 32592696 + 0 NA intron (ENSMUSG00000020272.8, intron 2 of 3) protein_coding-intron (ENSMUSG00000020272.8, intron 7 of 18) 3980 ENSMUSG00000020272.8 ENSMUSG00000020272 ENSMUST00000143397 Stk10 protein_coding Interval_157116 chr8 65402997 65404097 + 0 NA Intergenic Intergenic 36246 ENSMUSG00000064905.1 ENSMUSG00000064905 ENSMUST00000082971 Gm25403 misc_RNA Interval_110716 chr4 6800116 6801490 + 0 NA intron (ENSMUSG00000041272.11, intron 4 of 4) protein_coding-intron (ENSMUSG00000041272.11, intron 3 of 8) 112634 ENSMUSG00000086052.1 ENSMUSG00000086052 ENSMUST00000137749 Gm11802 antisense Interval_121882 chr5 9126898 9127326 + 0 NA promoter-TSS (ENSMUSG00000042508.16) protein_coding-promoter-TSS (ENSMUSG00000042508.16) -28621 ENSMUSG00000079659.5 ENSMUSG00000079659 ENSMUST00000200542 Tmem243 protein_coding Interval_124213 chr5 41392164 41392570 + 0 NA Intergenic Intergenic 29677 ENSMUSG00000107135.1 ENSMUSG00000107135 ENSMUST00000201766 Gm43806 processed_pseudogene Interval_20901 chr10 121877481 121878052 + 0 NA intron (ENSMUSG00000020121.15, intron 4 of 21) protein_coding-intron (ENSMUSG00000020121.15, intron 4 of 21) -45708 ENSMUSG00000112596.1 ENSMUSG00000112596 ENSMUST00000218664 Gm48804 TEC Interval_43536 chr13 32878282 32878489 + 0 NA Intergenic Intergenic -15215 ENSMUSG00000081433.1 ENSMUSG00000081433 ENSMUST00000118548 Serpinb1-ps1 unprocessed_pseudogene Interval_174000 chrX 127731181 127731817 + 0 NA intron (ENSMUSG00000043569.7, intron 1 of 1) protein_coding-intron (ENSMUSG00000043569.7, intron 1 of 1) 5055 ENSMUSG00000043569.7 ENSMUSG00000043569 ENSMUST00000052500 Cldn34c4 protein_coding Interval_53217 chr14 55189219 55189801 + 0 NA Intergenic Intergenic 19801 ENSMUSG00000115077.1 ENSMUSG00000115077 ENSMUST00000228176 Gm46455 unprocessed_pseudogene Interval_154219 chr8 13508379 13509480 + 0 NA Intergenic Intergenic -14439 ENSMUSG00000031451.6 ENSMUSG00000031451 ENSMUST00000033828 Gas6 protein_coding Interval_84863 chr19 17910324 17910734 + 0 NA Intergenic Intergenic -16094 ENSMUSG00000117822.1 ENSMUSG00000117822 ENSMUST00000236146 Eef1a1-ps1 processed_pseudogene Interval_108408 chr3 126750689 126750902 + 0 NA intron (ENSMUSG00000053819.16, intron 4 of 20) protein_coding-intron (ENSMUSG00000053819.16, intron 4 of 18) 4662 ENSMUSG00000105553.1 ENSMUSG00000105553 ENSMUST00000196636 Gm42514 TEC Interval_85068 chr19 22100524 22101678 + 0 NA Intergenic Intergenic 103770 ENSMUSG00000118226.1 ENSMUSG00000118226 ENSMUST00000237916 Gm50134 lincRNA Interval_88930 chr2 13077368 13077894 + 0 NA intron (ENSMUSG00000026727.10, intron 2 of 2) protein_coding-intron (ENSMUSG00000026727.10, intron 8 of 8) 40804 ENSMUSG00000103360.1 ENSMUSG00000103360 ENSMUST00000194601 Gm38156 TEC Interval_160675 chr8 111536032 111537782 + 0 NA promoter-TSS (ENSMUSG00000033545.14) protein_coding-promoter-TSS (ENSMUSG00000033545.14) -671 ENSMUSG00000033545.14 ENSMUSG00000033545 ENSMUST00000173819 Znrf1 protein_coding Interval_3457 chr1 58498306 58499359 + 0 NA intron (ENSMUSG00000026037.14, intron 1 of 4) protein_coding-intron (ENSMUSG00000026037.14, intron 4 of 17) 6123 ENSMUSG00000026037.14 ENSMUSG00000026037 ENSMUST00000191206 Orc2 protein_coding Interval_93240 chr2 71387773 71388073 + 0 NA Intergenic Intergenic -20390 ENSMUSG00000027010.16 ENSMUSG00000027010 ENSMUST00000146653 Slc25a12 protein_coding Interval_16526 chr10 63365865 63367091 + 0 NA intron (ENSMUSG00000020063.16, intron 2 of 13) protein_coding-intron (ENSMUSG00000020063.16, intron 2 of 13) 12625 ENSMUSG00000085372.1 ENSMUSG00000085372 ENSMUST00000128807 Gm16145 antisense Interval_6722 chr1 119003684 119005307 + 0 NA intron (ENSMUSG00000048402.14, intron 1 of 6) protein_coding-intron (ENSMUSG00000048402.14, intron 1 of 13) 48844 ENSMUSG00000048402.14 ENSMUSG00000048402 ENSMUST00000159678 Gli2 protein_coding Interval_46292 chr13 63430569 63432137 + 0 NA promoter-TSS (ENSMUSG00000021461.17) protein_coding-promoter-TSS (ENSMUSG00000021461.17) 309 ENSMUSG00000021461.17 ENSMUSG00000021461 ENSMUST00000160617 Fancc protein_coding Interval_152945 chr7 139969180 139969723 + 0 NA intron (ENSMUSG00000086742.8, intron 2 of 4) processed_transcript-intron (ENSMUSG00000086742.8, intron 2 of 4) 6767 ENSMUSG00000086742.8 ENSMUSG00000086742 ENSMUST00000210415 Gm16201 processed_transcript Interval_61380 chr15 81219767 81220554 + 0 NA Intergenic Intergenic -11000 ENSMUSG00000116122.1 ENSMUSG00000116122 ENSMUST00000230413 Gm49537 processed_pseudogene Interval_7380 chr1 130726864 130727098 + 0 NA TTS (ENSMUSG00000104515.1) TEC-TTS (ENSMUSG00000104515.1) 1840 ENSMUSG00000104515.1 ENSMUSG00000104515 ENSMUST00000195439 Gm37163 TEC Interval_31914 chr11 103816649 103817514 + 0 NA exon (ENSMUSG00000000125.5, exon 5 of 5) protein_coding-exon (ENSMUSG00000000125.5, exon 5 of 5) 42931 ENSMUSG00000000125.5 ENSMUSG00000000125 ENSMUST00000000127 Wnt3 protein_coding Interval_12246 chr1 191084411 191086055 + 0 NA exon (ENSMUSG00000062510.12, exon 6 of 6) protein_coding-exon (ENSMUSG00000062510.12, exon 6 of 6) -6553 ENSMUSG00000103576.1 ENSMUSG00000103576 ENSMUST00000192879 Gm38188 antisense Interval_174840 chrX 169371131 169371467 + 0 NA Intergenic Intergenic 3110 ENSMUSG00000081137.3 ENSMUSG00000081137 ENSMUST00000119987 BC022960 transcribed_processed_pseudogene Interval_105743 chr3 89101461 89102605 + 0 NA promoter-TSS (ENSMUSG00000059743.12) protein_coding-promoter-TSS (ENSMUSG00000059743.12) -934 ENSMUSG00000105204.1 ENSMUSG00000105204 ENSMUST00000200659 Gm43738 protein_coding Interval_106098 chr3 93031519 93031919 + 0 NA Intergenic Intergenic -12660 ENSMUSG00000027912.8 ENSMUSG00000027912 ENSMUST00000193944 Lce1m protein_coding Interval_36242 chr12 40212573 40212844 + 0 NA intron (ENSMUSG00000001627.12, intron 6 of 9) protein_coding-intron (ENSMUSG00000001627.12, intron 7 of 11) -1635 ENSMUSG00000090582.1 ENSMUSG00000090582 ENSMUST00000165676 Gm17024 sense_intronic Interval_136497 chr6 54943287 54945161 + 0 NA promoter-TSS (ENSMUSG00000038058.14) protein_coding-promoter-TSS (ENSMUSG00000038058.14) -4373 ENSMUSG00000038058.14 ENSMUSG00000038058 ENSMUST00000203837 Nod1 protein_coding Interval_21542 chr10 129549269 129549723 + 0 NA TTS (ENSMUSG00000107615.1) unprocessed_pseudogene-TTS (ENSMUSG00000107615.1) 1836 ENSMUSG00000107615.1 ENSMUSG00000107615 ENSMUST00000205161 Olfr793-ps1 unprocessed_pseudogene Interval_171016 chr9 113732383 113733140 + 0 NA Intergenic Intergenic -8751 ENSMUSG00000033392.16 ENSMUSG00000033392 ENSMUST00000163895 Clasp2 protein_coding Interval_84206 chr19 8756623 8757628 + 0 NA promoter-TSS (ENSMUSG00000010097.15) protein_coding-promoter-TSS (ENSMUSG00000010097.15) -9552 ENSMUSG00000010097.15 ENSMUSG00000010097 ENSMUST00000184808 Nxf1 protein_coding Interval_3121 chr1 53703998 53704467 + 0 NA intron (ENSMUSG00000096141.2, intron 1 of 3) protein_coding-intron (ENSMUSG00000096141.2, intron 1 of 65) 2552 ENSMUSG00000096141.2 ENSMUSG00000096141 ENSMUST00000189677 Dnah7a protein_coding Interval_88225 chr19 60818667 60819515 + 0 NA TTS (ENSMUSG00000024993.15) protein_coding-TTS (ENSMUSG00000024993.15) -3275 ENSMUSG00000083036.1 ENSMUSG00000083036 ENSMUST00000121724 Gm15959 processed_pseudogene Interval_54001 chr14 64256828 64257418 + 0 NA intron (ENSMUSG00000054733.9, intron 3 of 5) protein_coding-intron (ENSMUSG00000054733.9, intron 8 of 10) 140809 ENSMUSG00000114284.1 ENSMUSG00000114284 ENSMUST00000225122 9630015K15Rik antisense Interval_126150 chr5 79678750 79679650 + 0 NA Intergenic Intergenic -40091 ENSMUSG00000088422.1 ENSMUSG00000088422 ENSMUST00000157797 Gm22553 misc_RNA Interval_158911 chr8 87887914 87888502 + 0 NA intron (ENSMUSG00000045333.15, intron 2 of 3) protein_coding-intron (ENSMUSG00000045333.15, intron 1 of 6) 65654 ENSMUSG00000045333.15 ENSMUSG00000045333 ENSMUST00000173092 Zfp423 protein_coding Interval_109871 chr3 149219223 149220797 + 0 NA Intergenic Intergenic 5735 ENSMUSG00000070342.3 ENSMUSG00000070342 ENSMUST00000093950 Gm10287 lincRNA Interval_20595 chr10 119264552 119265270 + 0 NA Intergenic Intergenic -52302 ENSMUSG00000020114.12 ENSMUSG00000020114 ENSMUST00000126373 Cand1 protein_coding Interval_38008 chr12 73907411 73908842 + 0 NA exon (ENSMUSG00000021109.13, exon 1 of 15) protein_coding-exon (ENSMUSG00000021109.13, exon 1 of 15) -29527 ENSMUSG00000114046.1 ENSMUSG00000114046 ENSMUST00000221833 Snapc1l protein_coding Interval_135573 chr6 40619254 40619608 + 0 NA Intergenic Intergenic -6121 ENSMUSG00000058250.2 ENSMUSG00000058250 ENSMUST00000076565 Tas2r138 protein_coding Interval_109300 chr3 138770378 138771862 + 0 NA intron (ENSMUSG00000028152.10, intron 1 of 3) protein_coding-intron (ENSMUSG00000028152.10, intron 1 of 7) 28351 ENSMUSG00000028152.10 ENSMUSG00000028152 ENSMUST00000121826 Tspan5 protein_coding Interval_79289 chr18 30084608 30085013 + 0 NA Intergenic Intergenic -182439 ENSMUSG00000117465.1 ENSMUSG00000117465 ENSMUST00000234467 Gm49980 lincRNA Interval_114335 chr4 73531618 73531861 + 0 NA Intergenic Intergenic -33262 ENSMUSG00000081871.1 ENSMUSG00000081871 ENSMUST00000117277 Gm11488 processed_pseudogene Interval_109593 chr3 144896072 144896800 + 0 NA promoter-TSS (ENSMUSG00000074196.10) transcribed_unprocessed_pseudogene-promoter-TSS (ENSMUSG00000074196.10) -6691 ENSMUSG00000074196.10 ENSMUSG00000074196 ENSMUST00000098551 Clca4c-ps transcribed_unprocessed_pseudogene Interval_2988 chr1 51908269 51908653 + 0 NA intron (ENSMUSG00000018417.14, intron 1 of 6) protein_coding-intron (ENSMUSG00000018417.14, intron 1 of 30) 7451 ENSMUSG00000018417.14 ENSMUSG00000018417 ENSMUST00000126657 Myo1b protein_coding Interval_115871 chr4 105375033 105375410 + 0 NA promoter-TSS (ENSMUSG00000081819.1) processed_pseudogene-promoter-TSS (ENSMUSG00000081819.1) -275 ENSMUSG00000081819.1 ENSMUSG00000081819 ENSMUST00000118507 Gm12722 processed_pseudogene Interval_99629 chr2 163685981 163687192 + 0 NA intron (ENSMUSG00000087129.1, intron 1 of 1) protein_coding-intron (ENSMUSG00000035268.14, intron 1 of 3) 5693 ENSMUSG00000087129.1 ENSMUSG00000087129 ENSMUST00000154065 Gm16316 antisense Interval_86396 chr19 40229719 40229905 + 0 NA TTS (ENSMUSG00000055044.12) protein_coding-TTS (ENSMUSG00000055044.12) 993 ENSMUSG00000055044.12 ENSMUSG00000055044 ENSMUST00000182636 Pdlim1 protein_coding Interval_93239 chr2 71383696 71384336 + 0 NA Intergenic Intergenic -16483 ENSMUSG00000027010.16 ENSMUSG00000027010 ENSMUST00000146653 Slc25a12 protein_coding Interval_39035 chr12 84584133 84584374 + 0 NA intron (ENSMUSG00000021239.12, intron 3 of 4) protein_coding-intron (ENSMUSG00000021239.12, intron 3 of 4) 14413 ENSMUSG00000021239.12 ENSMUSG00000021239 ENSMUST00000169934 Vsx2 protein_coding Interval_94733 chr2 93870739 93872107 + 0 NA Intergenic Intergenic -14691 ENSMUSG00000075023.11 ENSMUSG00000075023 ENSMUST00000128995 Accsl protein_coding Interval_9783 chr1 162208932 162209722 + 0 NA intron (ENSMUSG00000040265.16, intron 3 of 8) protein_coding-intron (ENSMUSG00000040265.16, intron 14 of 19) -8487 ENSMUSG00000070126.1 ENSMUSG00000070126 ENSMUST00000093618 Mir199a-2 miRNA Interval_107599 chr3 108806163 108807106 + 0 NA promoter-TSS (ENSMUSG00000027882.18) protein_coding-promoter-TSS (ENSMUSG00000027882.18) 33881 ENSMUSG00000027882.18 ENSMUSG00000027882 ENSMUST00000106596 Stxbp3 protein_coding Interval_109337 chr3 139107324 139107730 + 0 NA Intergenic Intergenic 21244 ENSMUSG00000090801.1 ENSMUSG00000090801 ENSMUST00000170405 Gm4862 processed_pseudogene Interval_8791 chr1 151167346 151168215 + 0 NA Intergenic Intergenic -14757 ENSMUSG00000114212.1 ENSMUSG00000114212 ENSMUST00000225278 Gm47985 protein_coding Interval_7766 chr1 133527830 133529124 + 0 NA Intergenic Intergenic -1002 ENSMUSG00000101004.1 ENSMUSG00000101004 ENSMUST00000188004 Gm8596 processed_pseudogene Interval_137580 chr6 73591701 73591880 + 0 NA intron (ENSMUSG00000107441.1, intron 2 of 3) lincRNA-intron (ENSMUSG00000107441.1, intron 2 of 3) 16883 ENSMUSG00000107441.1 ENSMUSG00000107441 ENSMUST00000204638 Gm31747 lincRNA Interval_49684 chr13 113986468 113987289 + 0 NA intron (ENSMUSG00000042348.10, intron 5 of 5) protein_coding-intron (ENSMUSG00000042348.10, intron 4 of 4) 133538 ENSMUSG00000114696.1 ENSMUSG00000114696 ENSMUST00000223997 Gm47479 TEC Interval_102074 chr3 16482344 16483406 + 0 NA Intergenic Intergenic 299639 ENSMUSG00000047213.14 ENSMUSG00000047213 ENSMUST00000108346 Ythdf3 protein_coding Interval_150546 chr7 112257099 112257313 + 0 NA intron (ENSMUSG00000038244.14, intron 2 of 17) protein_coding-intron (ENSMUSG00000038244.14, intron 2 of 19) -92188 ENSMUSG00000038244.14 ENSMUSG00000038244 ENSMUST00000140202 Mical2 protein_coding Interval_102562 chr3 27782089 27782686 + 0 NA Intergenic Intergenic -71989 ENSMUSG00000039286.12 ENSMUSG00000039286 ENSMUST00000193779 Fndc3b protein_coding Interval_40763 chr12 108230553 108231231 + 0 NA intron (ENSMUSG00000084883.2, intron 1 of 5) protein_coding-intron (ENSMUSG00000084883.2, intron 1 of 6) 31807 ENSMUSG00000021258.10 ENSMUSG00000021258 ENSMUST00000223363 Ccnk protein_coding Interval_30651 chr11 95687435 95688553 + 0 NA Intergenic Intergenic 11149 ENSMUSG00000045075.3 ENSMUSG00000045075 ENSMUST00000191115 Gm9796 lincRNA Interval_51618 chr14 30825250 30826384 + 0 NA exon (ENSMUSG00000006526.13, exon 1 of 8) protein_coding-exon (ENSMUSG00000006526.13, exon 1 of 8) 223 ENSMUSG00000006526.13 ENSMUSG00000006526 ENSMUST00000226788 Stimate protein_coding Interval_120129 chr4 142754761 142755160 + 0 NA intron (ENSMUSG00000110067.2, intron 2 of 2) protein_coding-intron (ENSMUSG00000110067.2, intron 2 of 2) -35848 ENSMUSG00000103678.1 ENSMUSG00000103678 ENSMUST00000193751 Gm37624 TEC Interval_81258 chr18 56811489 56812207 + 0 NA exon (ENSMUSG00000032656.14, exon 1 of 4) protein_coding-exon (ENSMUSG00000032656.14, exon 1 of 4) 42131 ENSMUSG00000087597.1 ENSMUSG00000087597 ENSMUST00000128240 Gm15345 antisense Interval_99475 chr2 162083475 162083984 + 0 NA intron (ENSMUSG00000053141.16, intron 1 of 1) protein_coding-intron (ENSMUSG00000053141.16, intron 7 of 30) -283574 ENSMUSG00000053141.16 ENSMUSG00000053141 ENSMUST00000129015 Ptprt protein_coding Interval_48139 chr13 96589714 96589964 + 0 NA intron (ENSMUSG00000021669.15, intron 3 of 6) protein_coding-intron (ENSMUSG00000021669.15, intron 3 of 17) 13209 ENSMUSG00000113379.1 ENSMUSG00000113379 ENSMUST00000221851 Gm46436 TEC Interval_38133 chr12 75866574 75867206 + 0 NA intron (ENSMUSG00000063450.14, intron 2 of 12) protein_coding-intron (ENSMUSG00000063450.14, intron 2 of 115) -42213 ENSMUSG00000092922.1 ENSMUSG00000092922 ENSMUST00000175181 Mir5101 miRNA Interval_131772 chr5 139791020 139792160 + 0 NA promoter-TSS (ENSMUSG00000018143.10) protein_coding-promoter-TSS (ENSMUSG00000018143.10) 56 ENSMUSG00000018143.10 ENSMUSG00000018143 ENSMUST00000110836 Mafk protein_coding Interval_126978 chr5 98915344 98915605 + 0 NA Intergenic Intergenic 28358 ENSMUSG00000029334.14 ENSMUSG00000029334 ENSMUST00000160765 Prkg2 protein_coding Interval_75673 chr17 70526919 70528198 + 0 NA intron (ENSMUSG00000003279.17, intron 1 of 2) protein_coding-intron (ENSMUSG00000003279.17, intron 6 of 14) 228024 ENSMUSG00000097282.1 ENSMUSG00000097282 ENSMUST00000181546 5031415H12Rik antisense Interval_140492 chr6 118785425 118786037 + 0 NA intron (ENSMUSG00000051331.16, intron 3 of 47) protein_coding-intron (ENSMUSG00000051331.16, intron 3 of 46) -49169 ENSMUSG00000089115.1 ENSMUSG00000089115 ENSMUST00000158490 Gm25905 snRNA Interval_49283 chr13 110178518 110179251 + 0 NA intron (ENSMUSG00000021700.10, intron 3 of 3) protein_coding-intron (ENSMUSG00000021700.10, intron 3 of 4) 101266 ENSMUSG00000021700.10 ENSMUSG00000021700 ENSMUST00000226040 Rab3c protein_coding Interval_130287 chr5 125425825 125427067 + 0 NA intron (ENSMUSG00000029480.13, intron 1 of 6) protein_coding-intron (ENSMUSG00000029480.13, intron 8 of 26) 286 ENSMUSG00000029480.13 ENSMUSG00000029480 ENSMUST00000198746 Dhx37 protein_coding Interval_33142 chr11 114719781 114720023 + 0 NA exon (ENSMUSG00000034714.9, exon 14 of 14) protein_coding-exon (ENSMUSG00000034714.9, exon 14 of 14) -7506 ENSMUSG00000034706.16 ENSMUSG00000034706 ENSMUST00000130692 Dnaic2 protein_coding Interval_23400 chr11 22234381 22235367 + 0 NA intron (ENSMUSG00000042302.14, intron 4 of 24) protein_coding-intron (ENSMUSG00000042302.14, intron 3 of 23) 51921 ENSMUSG00000042302.14 ENSMUSG00000042302 ENSMUST00000137594 Ehbp1 protein_coding Interval_136359 chr6 53760661 53761215 + 0 NA Intergenic Intergenic -16446 ENSMUSG00000107984.1 ENSMUSG00000107984 ENSMUST00000203325 Gm5306 processed_pseudogene Interval_3638 chr1 60196662 60197267 + 0 NA intron (ENSMUSG00000073664.11, intron 4 of 54) protein_coding-intron (ENSMUSG00000073664.11, intron 4 of 54) 70664 ENSMUSG00000100516.1 ENSMUSG00000100516 ENSMUST00000190829 Gm29332 processed_pseudogene Interval_149262 chr7 96777748 96779013 + 0 NA intron (ENSMUSG00000048078.16, intron 1 of 1) protein_coding-intron (ENSMUSG00000048078.16, intron 16 of 32) -18261 ENSMUSG00000048078.16 ENSMUSG00000048078 ENSMUST00000147659 Tenm4 protein_coding Interval_164519 chr9 37656312 37657738 + 0 NA exon (ENSMUSG00000011114.18, exon 1 of 9) protein_coding-exon (ENSMUSG00000011114.18, exon 1 of 9) 212 ENSMUSG00000011114.18 ENSMUSG00000011114 ENSMUST00000126062 Tbrg1 protein_coding Interval_38697 chr12 81160803 81161339 + 0 NA intron (ENSMUSG00000021136.13, intron 7 of 11) protein_coding-intron (ENSMUSG00000021136.13, intron 7 of 12) -5080 ENSMUSG00000092673.1 ENSMUSG00000092673 ENSMUST00000174932 Mir3067 miRNA Interval_24494 chr11 33711986 33712328 + 0 NA TTS (ENSMUSG00000087328.1) antisense-TTS (ENSMUSG00000087328.1) 6607 ENSMUSG00000087328.1 ENSMUSG00000087328 ENSMUST00000125068 Gm12120 antisense Interval_142626 chr6 144370505 144371785 + 0 NA intron (ENSMUSG00000041540.16, intron 4 of 6) protein_coding-intron (ENSMUSG00000041540.16, intron 4 of 13) -110080 ENSMUSG00000087157.1 ENSMUSG00000087157 ENSMUST00000156443 Sox5os2 antisense Interval_151852 chr7 127121147 127122289 + 0 NA intron (ENSMUSG00000030674.5, intron 1 of 2) protein_coding-intron (ENSMUSG00000030674.5, intron 1 of 3) 300 ENSMUSG00000030674.5 ENSMUSG00000030674 ENSMUST00000142403 Qprt protein_coding Interval_128295 chr5 112341242 112343664 + 0 NA promoter-TSS (ENSMUSG00000042328.13) protein_coding-promoter-TSS (ENSMUSG00000042328.13) 565 ENSMUSG00000029346.12 ENSMUSG00000029346 ENSMUST00000147940 Srrd protein_coding Interval_131580 chr5 138272504 138273048 + 0 NA promoter-TSS (ENSMUSG00000075593.10) protein_coding-promoter-TSS (ENSMUSG00000075593.10) 25 ENSMUSG00000075593.10 ENSMUSG00000075593 ENSMUST00000161665 Gal3st4 protein_coding Interval_59901 chr15 61238107 61238353 + 0 NA intron (ENSMUSG00000116000.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000116000.1, intron 1 of 2) -50211 ENSMUSG00000116299.1 ENSMUSG00000116299 ENSMUST00000229323 Gm29904 lincRNA Interval_12400 chr1 193069981 193070859 + 0 NA Intergenic Intergenic 17920 ENSMUSG00000102442.1 ENSMUSG00000102442 ENSMUST00000191830 Gm37103 processed_pseudogene Interval_31662 chr11 102102378 102102937 + 0 NA Intergenic Intergenic -1347 ENSMUSG00000017316.13 ENSMUSG00000017316 ENSMUST00000017460 Ppy protein_coding Interval_109777 chr3 146900047 146900295 + 0 NA intron (ENSMUSG00000036745.15, intron 5 of 20) protein_coding-intron (ENSMUSG00000036745.15, intron 5 of 21) -43749 ENSMUSG00000036745.15 ENSMUSG00000036745 ENSMUST00000197547 Ttll7 protein_coding Interval_5969 chr1 93607305 93607982 + 0 NA exon (ENSMUSG00000034066.13, exon 18 of 27) protein_coding-exon (ENSMUSG00000034066.13, exon 18 of 27) -27550 ENSMUSG00000100927.1 ENSMUSG00000100927 ENSMUST00000190971 Gm28536 antisense Interval_91358 chr2 38201351 38201664 + 0 NA intron (ENSMUSG00000035392.17, intron 2 of 5) protein_coding-intron (ENSMUSG00000035392.17, intron 2 of 21) 23615 ENSMUSG00000105046.1 ENSMUSG00000105046 ENSMUST00000200061 Gm44455 miRNA Interval_106427 chr3 96147669 96147966 + 0 NA intron (ENSMUSG00000038495.14, intron 8 of 13) protein_coding-intron (ENSMUSG00000038495.14, intron 6 of 11) -22769 ENSMUSG00000045934.15 ENSMUSG00000045934 ENSMUST00000196004 Mtmr11 protein_coding Interval_46865 chr13 72829342 72829734 + 0 NA Intergenic Intergenic -12775 ENSMUSG00000113082.1 ENSMUSG00000113082 ENSMUST00000223149 D730050B12Rik lincRNA Interval_95085 chr2 103774249 103774588 + 0 NA promoter-TSS (ENSMUSG00000027184.14) protein_coding-promoter-TSS (ENSMUSG00000027184.14) -13223 ENSMUSG00000027185.15 ENSMUSG00000027185 ENSMUST00000148798 Nat10 protein_coding Interval_24169 chr11 30872037 30872281 + 0 NA intron (ENSMUSG00000040850.17, intron 2 of 2) protein_coding-intron (ENSMUSG00000040850.17, intron 43 of 46) 6690 ENSMUSG00000040850.17 ENSMUSG00000040850 ENSMUST00000155719 Psme4 protein_coding Interval_129054 chr5 117109677 117110238 + 0 NA promoter-TSS (ENSMUSG00000066900.11) protein_coding-promoter-TSS (ENSMUSG00000066900.11) -5261 ENSMUSG00000086047.1 ENSMUSG00000086047 ENSMUST00000149413 9530046B11Rik antisense Interval_114675 chr4 83663633 83663914 + 0 NA intron (ENSMUSG00000052407.17, intron 16 of 25) protein_coding-intron (ENSMUSG00000052407.17, intron 16 of 25) -37311 ENSMUSG00000080793.1 ENSMUSG00000080793 ENSMUST00000118595 Cbx3-ps3 processed_pseudogene Interval_47037 chr13 74581484 74581798 + 0 NA intron (ENSMUSG00000113204.1, intron 8 of 10) lincRNA-intron (ENSMUSG00000113204.1, intron 8 of 10) -11086 ENSMUSG00000113279.1 ENSMUSG00000113279 ENSMUST00000221881 Gm47470 processed_pseudogene Interval_136041 chr6 50255268 50255628 + 0 NA intron (ENSMUSG00000029821.15, intron 1 of 9) protein_coding-intron (ENSMUSG00000029821.15, intron 2 of 10) 6527 ENSMUSG00000029821.15 ENSMUSG00000029821 ENSMUST00000204700 Gsdme protein_coding Interval_152427 chr7 132990700 132991451 + 0 NA TTS (ENSMUSG00000030970.16) protein_coding-TTS (ENSMUSG00000030970.16) -7523 ENSMUSG00000085663.1 ENSMUSG00000085663 ENSMUST00000131085 Gm15718 antisense Interval_33157 chr11 114815109 114815341 + 0 NA Intergenic Intergenic 16301 ENSMUSG00000034677.9 ENSMUSG00000034677 ENSMUST00000106584 Gpr142 protein_coding Interval_126620 chr5 90992165 90992367 + 0 NA intron (ENSMUSG00000029376.8, intron 6 of 7) protein_coding-intron (ENSMUSG00000029376.8, intron 6 of 7) -35198 ENSMUSG00000035020.11 ENSMUSG00000035020 ENSMUST00000041516 Epgn protein_coding Interval_91327 chr2 37790713 37791093 + 0 NA promoter-TSS (ENSMUSG00000035403.10) protein_coding-promoter-TSS (ENSMUSG00000035403.10) -268 ENSMUSG00000035403.10 ENSMUSG00000035403 ENSMUST00000137693 Crb2 protein_coding Interval_129649 chr5 121526715 121527498 + 0 NA promoter-TSS (ENSMUSG00000029454.15) protein_coding-promoter-TSS (ENSMUSG00000029454.15) 3789 ENSMUSG00000082265.1 ENSMUSG00000082265 ENSMUST00000122152 Gm15547 processed_pseudogene Interval_171142 chr9 114736575 114737127 + 0 NA intron (ENSMUSG00000032434.9, intron 1 of 3) protein_coding-intron (ENSMUSG00000032434.9, intron 1 of 3) 5735 ENSMUSG00000032434.9 ENSMUSG00000032434 ENSMUST00000035007 Cmtm6 protein_coding Interval_50092 chr14 7936907 7938285 + 0 NA intron (ENSMUSG00000025278.9, intron 41 of 45) protein_coding-intron (ENSMUSG00000025278.9, intron 41 of 45) -19692 ENSMUSG00000109649.1 ENSMUSG00000109649 ENSMUST00000211339 Gm45521 protein_coding Interval_85668 chr19 29505487 29506062 + 0 NA intron (ENSMUSG00000097855.8, intron 3 of 3) antisense-intron (ENSMUSG00000097855.8, intron 3 of 3) 15196 ENSMUSG00000097855.8 ENSMUSG00000097855 ENSMUST00000180737 A930007I19Rik antisense Interval_152991 chr7 140591808 140592339 + 0 NA Intergenic Intergenic -9196 ENSMUSG00000093942.3 ENSMUSG00000093942 ENSMUST00000072655 Olfr46 protein_coding Interval_119063 chr4 135292061 135293079 + 0 NA Intergenic Intergenic -1895 ENSMUSG00000087270.2 ENSMUSG00000087270 ENSMUST00000120974 Gm12983 processed_pseudogene Interval_90575 chr2 31219640 31220430 + 0 NA Intergenic Intergenic -8688 ENSMUSG00000087430.1 ENSMUSG00000087430 ENSMUST00000146769 Gm13405 antisense Interval_133163 chr5 150262439 150262982 + 0 NA intron (ENSMUSG00000056602.12, intron 1 of 60) protein_coding-intron (ENSMUSG00000056602.12, intron 1 of 60) 18847 ENSMUSG00000107082.1 ENSMUSG00000107082 ENSMUST00000201709 Gm36378 processed_pseudogene Interval_72483 chr17 30104860 30105623 + 0 NA intron (ENSMUSG00000044477.12, intron 2 of 5) protein_coding-intron (ENSMUSG00000044477.12, intron 2 of 4) -30949 ENSMUSG00000044477.12 ENSMUSG00000044477 ENSMUST00000234091 Zfand3 protein_coding Interval_39404 chr12 87203625 87204012 + 0 NA intron (ENSMUSG00000090812.8, intron 2 of 2) protein_coding-intron (ENSMUSG00000090812.8, intron 2 of 3) -3364 ENSMUSG00000034111.6 ENSMUSG00000034111 ENSMUST00000037418 Tmed8 protein_coding Interval_96273 chr2 121139511 121141165 + 0 NA promoter-TSS (ENSMUSG00000027259.15) protein_coding-promoter-TSS (ENSMUSG00000027259.15) -183 ENSMUSG00000027259.15 ENSMUSG00000027259 ENSMUST00000152164 Adal protein_coding Interval_82141 chr18 67987302 67987850 + 0 NA intron (ENSMUSG00000024544.9, intron 1 of 5) protein_coding-intron (ENSMUSG00000024544.9, intron 1 of 5) 79948 ENSMUSG00000118326.1 ENSMUSG00000118326 ENSMUST00000235570 Gm8887 processed_pseudogene Interval_93969 chr2 80292797 80293837 + 0 NA exon (ENSMUSG00000050114.7, exon 1 of 1) protein_coding-exon (ENSMUSG00000050114.7, exon 1 of 1) 845 ENSMUSG00000050114.7 ENSMUSG00000050114 ENSMUST00000057072 Prdx6b protein_coding Interval_19091 chr10 94453177 94453442 + 0 NA intron (ENSMUSG00000020023.18, intron 2 of 2) protein_coding-intron (ENSMUSG00000020023.18, intron 2 of 2) 44418 ENSMUSG00000085409.1 ENSMUSG00000085409 ENSMUST00000155180 Gm16155 sense_intronic Interval_8016 chr1 135217328 135218431 + 0 NA Intergenic Intergenic -14116 ENSMUSG00000079139.4 ENSMUSG00000079139 ENSMUST00000110798 Gm4204 processed_pseudogene Interval_39431 chr12 87357673 87357843 + 0 NA intron (ENSMUSG00000021036.10, intron 2 of 4) protein_coding-intron (ENSMUSG00000021036.10, intron 2 of 11) -14234 ENSMUSG00000113648.1 ENSMUSG00000113648 ENSMUST00000221879 Gm48806 processed_pseudogene Interval_160009 chr8 105716413 105717527 + 0 NA TTS (ENSMUSG00000013150.15) protein_coding-TTS (ENSMUSG00000013150.15) -8825 ENSMUSG00000013155.10 ENSMUSG00000013155 ENSMUST00000013299 Enkd1 protein_coding Interval_33628 chr11 117616645 117618049 + 0 NA Intergenic Intergenic 6100 ENSMUSG00000054418.6 ENSMUSG00000054418 ENSMUST00000155384 2900041M22Rik processed_transcript Interval_36545 chr12 49233695 49234471 + 0 NA Intergenic Intergenic -89860 ENSMUSG00000112651.1 ENSMUSG00000112651 ENSMUST00000219860 Gm18623 processed_pseudogene Interval_98084 chr2 147789211 147790233 + 0 NA Intergenic Intergenic 79029 ENSMUSG00000051986.6 ENSMUSG00000051986 ENSMUST00000152542 A530006G24Rik lincRNA Interval_157325 chr8 69310814 69311371 + 0 NA intron (ENSMUSG00000079038.3, intron 3 of 3) protein_coding-intron (ENSMUSG00000079038.3, intron 3 of 3) -18126 ENSMUSG00000110514.1 ENSMUSG00000110514 ENSMUST00000212857 Gm7688 processed_pseudogene Interval_105791 chr3 89354750 89355219 + 0 NA promoter-TSS (ENSMUSG00000042672.15) protein_coding-promoter-TSS (ENSMUSG00000042672.15) -86 ENSMUSG00000042672.15 ENSMUSG00000042672 ENSMUST00000127766 Dcst1 protein_coding Interval_19380 chr10 98648896 98649270 + 0 NA Intergenic Intergenic 50627 ENSMUSG00000112647.1 ENSMUSG00000112647 ENSMUST00000217680 Gm5427 lincRNA Interval_141262 chr6 126668900 126669123 + 0 NA Intergenic Intergenic -22627 ENSMUSG00000047976.4 ENSMUSG00000047976 ENSMUST00000205171 Kcna1 protein_coding Interval_40370 chr12 104447124 104449412 + 0 NA Intergenic Intergenic 25062 ENSMUSG00000021095.5 ENSMUSG00000021095 ENSMUST00000021513 Gsc protein_coding Interval_117062 chr4 119292100 119295150 + 0 NA TTS (ENSMUSG00000028639.14) protein_coding-TTS (ENSMUSG00000028639.14) 875 ENSMUSG00000028639.14 ENSMUSG00000028639 ENSMUST00000152733 Ybx1 protein_coding Interval_38645 chr12 80774782 80775372 + 0 NA Intergenic Intergenic -14390 ENSMUSG00000062961.7 ENSMUSG00000062961 ENSMUST00000073251 Ccdc177 protein_coding Interval_156203 chr8 45994110 45994689 + 0 NA promoter-TSS (ENSMUSG00000031634.13) protein_coding-promoter-TSS (ENSMUSG00000031634.13) 1774 ENSMUSG00000031634.13 ENSMUSG00000031634 ENSMUST00000151983 Ufsp2 protein_coding Interval_120154 chr4 143096178 143096796 + 0 NA Intergenic Intergenic -22721 ENSMUSG00000110067.2 ENSMUSG00000110067 ENSMUST00000238915 6330411D24Rik protein_coding Interval_132931 chr5 148803715 148804208 + 0 NA Intergenic Intergenic -16806 ENSMUSG00000087647.2 ENSMUSG00000087647 ENSMUST00000136919 Gm15407 lincRNA Interval_135405 chr6 39131342 39132890 + 0 NA intron (ENSMUSG00000073144.4, intron 1 of 3) antisense-intron (ENSMUSG00000073144.4, intron 1 of 3) -5735 ENSMUSG00000106976.1 ENSMUSG00000106976 ENSMUST00000202943 Gm42963 TEC Interval_32197 chr11 106057772 106058385 + 0 NA exon (ENSMUSG00000049354.8, exon 7 of 7) protein_coding-exon (ENSMUSG00000049354.8, exon 7 of 7) -6226 ENSMUSG00000085033.1 ENSMUSG00000085033 ENSMUST00000135857 Gm11646 antisense Interval_23010 chr11 18913261 18913764 + 0 NA intron (ENSMUSG00000020160.18, intron 6 of 9) protein_coding-intron (ENSMUSG00000020160.18, intron 8 of 12) -23672 ENSMUSG00000104244.1 ENSMUSG00000104244 ENSMUST00000195805 2900018N21Rik TEC Interval_6417 chr1 107565395 107565731 + 0 NA Intergenic Intergenic -24483 ENSMUSG00000026315.13 ENSMUSG00000026315 ENSMUST00000123086 Serpinb8 protein_coding Interval_41283 chr12 112411675 112412281 + 0 NA exon (ENSMUSG00000047828.4, exon 4 of 4) processed_transcript-exon (ENSMUSG00000047828.4, exon 4 of 4) -6184 ENSMUSG00000113120.1 ENSMUSG00000113120 ENSMUST00000221094 E330035G20Rik lincRNA Interval_83313 chr18 84091861 84092755 + 0 NA intron (ENSMUSG00000049090.3, intron 1 of 1) protein_coding-intron (ENSMUSG00000049090.3, intron 1 of 1) 3637 ENSMUSG00000049090.3 ENSMUSG00000049090 ENSMUST00000235383 Zadh2 protein_coding Interval_79411 chr18 31732511 31732891 + 0 NA Intergenic Intergenic -6014 ENSMUSG00000117533.1 ENSMUSG00000117533 ENSMUST00000234849 Gm50060 processed_pseudogene Interval_72738 chr17 31841303 31842382 + 0 NA Intergenic Intergenic 9733 ENSMUSG00000024042.7 ENSMUSG00000024042 ENSMUST00000234142 Sik1 protein_coding Interval_150306 chr7 109501143 109501447 + 0 NA intron (ENSMUSG00000031026.15, intron 1 of 19) protein_coding-intron (ENSMUSG00000031026.15, intron 1 of 19) -17975 ENSMUSG00000046364.14 ENSMUSG00000046364 ENSMUST00000174303 Rpl27a protein_coding Interval_151788 chr7 126676591 126676898 + 0 NA promoter-TSS (ENSMUSG00000030711.16) protein_coding-promoter-TSS (ENSMUSG00000030711.16) -369 ENSMUSG00000030711.16 ENSMUSG00000030711 ENSMUST00000155419 Sult1a1 protein_coding Interval_123885 chr5 36296560 36297131 + 0 NA intron (ENSMUSG00000029093.14, intron 1 of 7) protein_coding-intron (ENSMUSG00000029093.14, intron 1 of 26) -4725 ENSMUSG00000098884.1 ENSMUSG00000098884 ENSMUST00000184943 Mir7689 miRNA Interval_6776 chr1 119417356 119417710 + 0 NA exon (ENSMUSG00000037035.5, exon 2 of 2) protein_coding-exon (ENSMUSG00000037035.5, exon 2 of 2) 4715 ENSMUSG00000037035.5 ENSMUSG00000037035 ENSMUST00000038765 Inhbb protein_coding Interval_91071 chr2 34815456 34816514 + 0 NA exon (ENSMUSG00000035949.15, exon 4 of 4) protein_coding-exon (ENSMUSG00000035949.15, exon 4 of 4) 10222 ENSMUSG00000035949.15 ENSMUSG00000035949 ENSMUST00000126051 Fbxw2 protein_coding Interval_15952 chr10 59580481 59581622 + 0 NA intron (ENSMUSG00000009647.13, intron 3 of 3) protein_coding-intron (ENSMUSG00000009647.13, intron 1 of 7) -35013 ENSMUSG00000071280.2 ENSMUSG00000071280 ENSMUST00000238281 Gm10322 antisense Interval_20854 chr10 121520990 121521975 + 0 NA intron (ENSMUSG00000112527.1, intron 2 of 2) lincRNA-intron (ENSMUSG00000112527.1, intron 1 of 1) 10894 ENSMUSG00000118419.1 ENSMUSG00000118419 ENSMUST00000238643 Gm50454 unprocessed_pseudogene Interval_138730 chr6 91491128 91491345 + 0 NA exon (ENSMUSG00000030094.8, exon 15 of 16) protein_coding-exon (ENSMUSG00000030094.8, exon 15 of 16) 17485 ENSMUSG00000030095.10 ENSMUSG00000030095 ENSMUST00000144246 Tmem43 protein_coding Interval_125925 chr5 75848714 75849179 + 0 NA TTS (ENSMUSG00000100936.1) lincRNA-TTS (ENSMUSG00000100936.1) 2857 ENSMUSG00000103684.1 ENSMUSG00000103684 ENSMUST00000192381 Gm38180 TEC Interval_20357 chr10 117090959 117091836 + 0 NA intron (ENSMUSG00000020170.4, intron 4 of 5) protein_coding-intron (ENSMUSG00000020170.4, intron 4 of 9) -36496 ENSMUSG00000034024.8 ENSMUSG00000034024 ENSMUST00000218059 Cct2 protein_coding Interval_134451 chr6 28831529 28834016 + 0 NA intron (ENSMUSG00000001424.14, intron 16 of 16) protein_coding-intron (ENSMUSG00000001424.14, intron 16 of 23) -2427 ENSMUSG00000049939.6 ENSMUSG00000049939 ENSMUST00000062304 Lrrc4 protein_coding Interval_24362 chr11 32671551 32671883 + 0 NA intron (ENSMUSG00000020271.17, intron 2 of 4) protein_coding-intron (ENSMUSG00000020271.17, intron 1 of 13) 28813 ENSMUSG00000020271.17 ENSMUSG00000020271 ENSMUST00000143290 Fbxw11 protein_coding Interval_60293 chr15 72545768 72548336 + 0 NA promoter-TSS (ENSMUSG00000036760.7) protein_coding-promoter-TSS (ENSMUSG00000036760.7) -712 ENSMUSG00000036760.7 ENSMUSG00000036760 ENSMUST00000044624 Kcnk9 protein_coding Interval_39826 chr12 98761506 98761777 + 0 NA promoter-TSS (ENSMUSG00000113341.1) TEC-promoter-TSS (ENSMUSG00000113341.1) -407 ENSMUSG00000113341.1 ENSMUSG00000113341 ENSMUST00000222913 9430031K09Rik TEC Interval_94958 chr2 102174326 102174579 + 0 NA exon (ENSMUSG00000082328.1, exon 1 of 1) processed_pseudogene-exon (ENSMUSG00000082328.1, exon 1 of 1) 162 ENSMUSG00000082328.1 ENSMUSG00000082328 ENSMUST00000119411 Gm13921 processed_pseudogene Interval_162018 chr8 124467851 124468740 + 0 NA Intergenic Intergenic -28637 ENSMUSG00000050751.14 ENSMUSG00000050751 ENSMUST00000140126 Pgbd5 protein_coding Interval_103509 chr3 45578253 45579266 + 0 NA Intergenic Intergenic 112145 ENSMUSG00000103534.1 ENSMUSG00000103534 ENSMUST00000193305 Gm37835 processed_pseudogene Interval_111723 chr4 26775546 26775804 + 0 NA Intergenic Intergenic -70226 ENSMUSG00000086257.1 ENSMUSG00000086257 ENSMUST00000154459 4930548K13Rik lincRNA Interval_156700 chr8 57450238 57451003 + 0 NA Intergenic Intergenic -5303 ENSMUSG00000031610.3 ENSMUSG00000031610 ENSMUST00000034023 Scrg1 protein_coding Interval_42889 chr13 21160449 21161739 + 0 NA Intergenic Intergenic -15227 ENSMUSG00000045474.7 ENSMUSG00000045474 ENSMUST00000055298 Olfr1368 protein_coding Interval_54606 chr14 71128917 71129204 + 0 NA intron (ENSMUSG00000115671.1, intron 3 of 7) lincRNA-intron (ENSMUSG00000115671.1, intron 3 of 7) 41790 ENSMUSG00000115671.1 ENSMUSG00000115671 ENSMUST00000227525 Gm49289 lincRNA Interval_77674 chr17 94038436 94038644 + 0 NA Intergenic Intergenic 93731 ENSMUSG00000117543.1 ENSMUSG00000117543 ENSMUST00000235005 Gm50004 processed_pseudogene Interval_157268 chr8 68828570 68828772 + 0 NA promoter-TSS (ENSMUSG00000031864.16) protein_coding-promoter-TSS (ENSMUSG00000031864.16) -186 ENSMUSG00000031864.16 ENSMUSG00000031864 ENSMUST00000212064 Ints10 protein_coding Interval_41748 chr12 118650293 118651107 + 0 NA Intergenic Intergenic 48023 ENSMUSG00000114034.1 ENSMUSG00000114034 ENSMUST00000222831 Gm9267 processed_pseudogene Interval_86175 chr19 37550003 37551062 + 0 NA promoter-TSS (ENSMUSG00000053799.8) protein_coding-promoter-TSS (ENSMUSG00000053799.8) 29653 ENSMUSG00000053799.8 ENSMUSG00000053799 ENSMUST00000238817 Exoc6 protein_coding Interval_97330 chr2 134523064 134523263 + 0 NA intron (ENSMUSG00000027261.2, intron 3 of 7) protein_coding-intron (ENSMUSG00000027261.2, intron 3 of 7) 31144 ENSMUSG00000027261.2 ENSMUSG00000027261 ENSMUST00000140794 Hao1 protein_coding Interval_154933 chr8 25155214 25155499 + 0 NA exon (ENSMUSG00000065954.11, exon 13 of 13) protein_coding-exon (ENSMUSG00000065954.11, exon 13 of 13) 3877 ENSMUSG00000099142.1 ENSMUSG00000099142 ENSMUST00000184998 Mir8108 miRNA Interval_5935 chr1 93314614 93315013 + 0 NA intron (ENSMUSG00000026274.11, intron 2 of 5) protein_coding-intron (ENSMUSG00000026274.11, intron 14 of 17) -3469 ENSMUSG00000026274.11 ENSMUSG00000026274 ENSMUST00000128253 Pask protein_coding Interval_174399 chrX 151214882 151215173 + 0 NA TTS (ENSMUSG00000083596.4) processed_pseudogene-TTS (ENSMUSG00000083596.4) 622 ENSMUSG00000083596.4 ENSMUSG00000083596 ENSMUST00000121545 Rpl21-ps15 processed_pseudogene Interval_82223 chr18 69380176 69381207 + 0 NA intron (ENSMUSG00000053477.17, intron 1 of 6) protein_coding-intron (ENSMUSG00000053477.17, intron 3 of 20) 124403 ENSMUSG00000098060.1 ENSMUSG00000098060 ENSMUST00000183237 Gm4842 processed_pseudogene Interval_137194 chr6 69613130 69613958 + 0 NA Intergenic Intergenic -3504 ENSMUSG00000105301.1 ENSMUSG00000105301 ENSMUST00000196495 Igkv13-54-1 IG_V_pseudogene Interval_40850 chr12 108843809 108844475 + 0 NA intron (ENSMUSG00000048856.9, intron 1 of 4) protein_coding-intron (ENSMUSG00000048856.9, intron 1 of 4) 7169 ENSMUSG00000065429.1 ENSMUSG00000065429 ENSMUST00000083495 Mir345 miRNA Interval_163273 chr9 20459304 20460356 + 0 NA promoter-TSS (ENSMUSG00000063108.15) protein_coding-promoter-TSS (ENSMUSG00000063108.15) -3 ENSMUSG00000063108.15 ENSMUSG00000063108 ENSMUST00000162438 Zfp26 protein_coding Interval_104404 chr3 65358499 65359248 + 0 NA TTS (ENSMUSG00000027827.17) protein_coding-TTS (ENSMUSG00000027827.17) -9444 ENSMUSG00000090120.1 ENSMUSG00000090120 ENSMUST00000160137 A730090N16Rik antisense Interval_91106 chr2 35131666 35132800 + 0 NA promoter-TSS (ENSMUSG00000057110.15) protein_coding-promoter-TSS (ENSMUSG00000057110.15) -12863 ENSMUSG00000057110.15 ENSMUSG00000057110 ENSMUST00000143807 Cntrl protein_coding Interval_47198 chr13 77810226 77811152 + 0 NA intron (ENSMUSG00000064138.14, intron 4 of 10) protein_coding-intron (ENSMUSG00000064138.14, intron 3 of 9) 108656 ENSMUSG00000064138.14 ENSMUSG00000064138 ENSMUST00000224013 Fam172a protein_coding Interval_166806 chr9 62810440 62811717 + 0 NA exon (ENSMUSG00000032244.9, exon 1 of 2) protein_coding-exon (ENSMUSG00000032244.9, exon 1 of 2) 856 ENSMUSG00000032244.9 ENSMUSG00000032244 ENSMUST00000034775 Fem1b protein_coding Interval_110108 chr3 153359485 153360661 + 0 NA intron (ENSMUSG00000052544.9, intron 3 of 4) protein_coding-intron (ENSMUSG00000052544.9, intron 2 of 2) 46360 ENSMUSG00000099114.1 ENSMUSG00000099114 ENSMUST00000184201 Gm27405 miRNA Interval_166840 chr9 63140106 63140351 + 0 NA intron (ENSMUSG00000022245.15, intron 6 of 8) protein_coding-intron (ENSMUSG00000022245.15, intron 6 of 8) 6783 ENSMUSG00000022245.15 ENSMUSG00000022245 ENSMUST00000055281 Skor1 protein_coding Interval_165364 chr9 46633933 46634457 + 0 NA Intergenic Intergenic -3976 ENSMUSG00000064673.1 ENSMUSG00000064673 ENSMUST00000082739 Gm22805 snRNA Interval_12461 chr1 193656898 193657161 + 0 NA Intergenic Intergenic -146855 ENSMUSG00000097850.2 ENSMUSG00000097850 ENSMUST00000180420 Mir205hg lincRNA Interval_93620 chr2 75047677 75048699 + 0 NA Intergenic Intergenic 89610 ENSMUSG00000087333.1 ENSMUSG00000087333 ENSMUST00000143898 Gm13652 lincRNA Interval_7797 chr1 133753249 133753895 + 0 NA promoter-TSS (ENSMUSG00000026463.17) protein_coding-promoter-TSS (ENSMUSG00000026463.17) 24849 ENSMUSG00000102509.1 ENSMUSG00000102509 ENSMUST00000193173 Gm37368 TEC Interval_33756 chr11 118289041 118290771 + 0 NA intron (ENSMUSG00000033909.17, intron 1 of 3) protein_coding-intron (ENSMUSG00000033909.17, intron 1 of 20) 166 ENSMUSG00000033909.17 ENSMUSG00000033909 ENSMUST00000151433 Usp36 protein_coding Interval_31978 chr11 104288755 104290927 + 0 NA intron (ENSMUSG00000018411.17, intron 3 of 4) protein_coding-intron (ENSMUSG00000018411.17, intron 3 of 3) -30480 ENSMUSG00000085134.1 ENSMUSG00000085134 ENSMUST00000137561 Gm11659 antisense Interval_7241 chr1 128166907 128167683 + 0 NA intron (ENSMUSG00000056211.13, intron 3 of 8) protein_coding-intron (ENSMUSG00000056211.13, intron 5 of 26) 4081 ENSMUSG00000103497.1 ENSMUSG00000103497 ENSMUST00000194793 Gm37407 TEC Interval_73211 chr17 35590491 35592329 + 0 NA Intergenic Intergenic -10168 ENSMUSG00000090509.2 ENSMUSG00000090509 ENSMUST00000171166 Sfta2 protein_coding Interval_61478 chr15 81857899 81860228 + 0 NA promoter-TSS (ENSMUSG00000048546.8) protein_coding-promoter-TSS (ENSMUSG00000048546.8) -541 ENSMUSG00000048546.8 ENSMUSG00000048546 ENSMUST00000230448 Tob2 protein_coding Interval_120110 chr4 141901607 141902275 + 0 NA intron (ENSMUSG00000051435.11, intron 30 of 32) protein_coding-intron (ENSMUSG00000051435.11, intron 29 of 31) 16287 ENSMUSG00000085922.1 ENSMUSG00000085922 ENSMUST00000152351 Fhad1os2 antisense Interval_75239 chr17 65141417 65141620 + 0 NA Intergenic Intergenic 27685 ENSMUSG00000117336.1 ENSMUSG00000117336 ENSMUST00000233948 Gm49865 processed_pseudogene Interval_48280 chr13 97645239 97645567 + 0 NA Intergenic Intergenic 35867 ENSMUSG00000114599.1 ENSMUSG00000114599 ENSMUST00000225459 Gm48070 processed_pseudogene Interval_164860 chr9 42530360 42532677 + 0 NA intron (ENSMUSG00000032017.14, intron 19 of 20) protein_coding-intron (ENSMUSG00000032017.14, intron 17 of 18) -10687 ENSMUSG00000093745.1 ENSMUSG00000093745 ENSMUST00000176676 Gm24420 misc_RNA Interval_139122 chr6 95540974 95541304 + 0 NA intron (ENSMUSG00000061838.7, intron 9 of 10) protein_coding-intron (ENSMUSG00000061838.7, intron 9 of 10) 116329 ENSMUSG00000061838.7 ENSMUSG00000061838 ENSMUST00000203109 Suclg2 protein_coding Interval_124934 chr5 61062188 61062559 + 0 NA Intergenic Intergenic -116724 ENSMUSG00000105903.1 ENSMUSG00000105903 ENSMUST00000199566 1700014F14Rik lincRNA Interval_89148 chr2 17413916 17414856 + 0 NA intron (ENSMUSG00000053702.16, intron 8 of 12) protein_coding-intron (ENSMUSG00000053702.16, intron 4 of 6) -23378 ENSMUSG00000053702.16 ENSMUSG00000053702 ENSMUST00000130725 Nebl protein_coding Interval_56033 chr14 104935959 104936249 + 0 NA exon (ENSMUSG00000115432.1, exon 4 of 6) lincRNA-exon (ENSMUSG00000115432.1, exon 4 of 6) -35323 ENSMUSG00000077425.1 ENSMUSG00000077425 ENSMUST00000104237 Gm24280 snoRNA Interval_116960 chr4 118471078 118471399 + 0 NA TTS (ENSMUSG00000033191.14) protein_coding-TTS (ENSMUSG00000033191.14) -13743 ENSMUSG00000006389.13 ENSMUSG00000006389 ENSMUST00000216417 Mpl protein_coding Interval_18341 chr10 85044211 85045762 + 0 NA Intergenic Intergenic 57509 ENSMUSG00000050035.7 ENSMUSG00000050035 ENSMUST00000216889 Fhl4 protein_coding Interval_73694 chr17 42843211 42843406 + 0 NA intron (ENSMUSG00000061665.7, intron 1 of 15) protein_coding-intron (ENSMUSG00000061665.7, intron 3 of 17) -12278 ENSMUSG00000061665.7 ENSMUSG00000061665 ENSMUST00000233626 Cd2ap protein_coding Interval_30152 chr11 89909895 89910801 + 0 NA Intergenic Intergenic -69082 ENSMUSG00000047773.15 ENSMUSG00000047773 ENSMUST00000207171 Ankfn1 protein_coding Interval_151967 chr7 127861922 127862141 + 0 NA Intergenic Intergenic 14103 ENSMUSG00000049728.14 ENSMUSG00000049728 ENSMUST00000150961 Zfp668 protein_coding Interval_167891 chr9 73603376 73603676 + 0 NA intron (ENSMUSG00000062151.13, intron 19 of 32) protein_coding-intron (ENSMUSG00000062151.13, intron 18 of 31) -49656 ENSMUSG00000103832.1 ENSMUSG00000103832 ENSMUST00000195250 Gm37611 TEC Interval_126409 chr5 88161618 88162756 + 0 NA Intergenic Intergenic -8088 ENSMUSG00000079438.1 ENSMUSG00000079438 ENSMUST00000113255 Gm11115 protein_coding Interval_143082 chr6 149130774 149132875 + 0 NA Intergenic Intergenic 1654 ENSMUSG00000067292.3 ENSMUSG00000067292 ENSMUST00000087348 Gm10203 protein_coding Interval_165997 chr9 55283077 55284128 + 0 NA promoter-TSS (ENSMUSG00000032311.17) protein_coding-promoter-TSS (ENSMUSG00000032311.17) 23 ENSMUSG00000032311.17 ENSMUSG00000032311 ENSMUST00000133659 Nrg4 protein_coding Interval_11680 chr1 184626359 184626830 + 0 NA intron (ENSMUSG00000103308.5, intron 1 of 2) lincRNA-intron (ENSMUSG00000103308.5, intron 1 of 2) 2879 ENSMUSG00000103308.5 ENSMUSG00000103308 ENSMUST00000192129 Gm37800 lincRNA Interval_51883 chr14 33330911 33331956 + 0 NA intron (ENSMUSG00000063506.14, intron 1 of 5) protein_coding-intron (ENSMUSG00000063506.14, intron 1 of 5) 38710 ENSMUSG00000087639.1 ENSMUSG00000087639 ENSMUST00000137359 Gm15512 antisense Interval_51245 chr14 25517342 25517578 + 0 NA intron (ENSMUSG00000007817.15, intron 2 of 23) protein_coding-intron (ENSMUSG00000007817.15, intron 2 of 23) -16979 ENSMUSG00000093081.1 ENSMUSG00000093081 ENSMUST00000175340 Mir3075 miRNA Interval_46329 chr13 63994283 63995066 + 0 NA Intergenic Intergenic -48153 ENSMUSG00000113340.1 ENSMUSG00000113340 ENSMUST00000220900 Gm7695 processed_pseudogene Interval_17455 chr10 76977309 76978289 + 0 NA intron (ENSMUSG00000112143.1, intron 3 of 4) lincRNA-intron (ENSMUSG00000112143.1, intron 3 of 4) 6102 ENSMUSG00000102522.1 ENSMUSG00000102522 ENSMUST00000194879 Gm37782 TEC Interval_67543 chr16 50508824 50509069 + 0 NA Intergenic Intergenic -17299 ENSMUSG00000097694.8 ENSMUSG00000097694 ENSMUST00000181884 G730013B05Rik lincRNA Interval_89868 chr2 26105986 26107315 + 0 NA intron (ENSMUSG00000026932.14, intron 1 of 2) protein_coding-intron (ENSMUSG00000026932.14, intron 1 of 5) -14831 ENSMUSG00000026932.14 ENSMUSG00000026932 ENSMUST00000149408 Nacc2 protein_coding Interval_122020 chr5 14031757 14033647 + 0 NA intron (ENSMUSG00000063531.7, intron 1 of 15) protein_coding-intron (ENSMUSG00000063531.7, intron 1 of 16) 4808 ENSMUSG00000105528.1 ENSMUSG00000105528 ENSMUST00000197239 Gm43519 TEC Interval_25783 chr11 51697537 51698344 + 0 NA intron (ENSMUSG00000036391.16, intron 21 of 22) protein_coding-intron (ENSMUSG00000036391.16, intron 21 of 22) -9066 ENSMUSG00000007777.9 ENSMUSG00000007777 ENSMUST00000109098 0610009B22Rik protein_coding Interval_103405 chr3 41329762 41329931 + 0 NA Intergenic Intergenic -24301 ENSMUSG00000105297.1 ENSMUSG00000105297 ENSMUST00000196142 1700052H01Rik lincRNA Interval_101269 chr2 180006237 180006595 + 0 NA Intergenic Intergenic 13228 ENSMUSG00000082850.1 ENSMUSG00000082850 ENSMUST00000117586 Gm14299 processed_pseudogene Interval_54972 chr14 76585884 76586388 + 0 NA Intergenic Intergenic -29247 ENSMUSG00000052584.10 ENSMUSG00000052584 ENSMUST00000228524 Serp2 protein_coding Interval_140025 chr6 113492068 113492671 + 0 NA exon (ENSMUSG00000030284.11, exon 1 of 1) protein_coding-exon (ENSMUSG00000030284.11, exon 1 of 1) 352 ENSMUSG00000030284.11 ENSMUSG00000030284 ENSMUST00000129125 Creld1 protein_coding Interval_14080 chr10 26677144 26677919 + 0 NA Intergenic Intergenic -2919 ENSMUSG00000098179.1 ENSMUSG00000098179 ENSMUST00000183230 Gm8709 processed_pseudogene Interval_111936 chr4 32678063 32678300 + 0 NA intron (ENSMUSG00000058006.12, intron 13 of 101) protein_coding-intron (ENSMUSG00000058006.12, intron 13 of 101) 21062 ENSMUSG00000058006.12 ENSMUSG00000058006 ENSMUST00000124361 Mdn1 protein_coding Interval_139261 chr6 97647429 97649796 + 0 NA Intergenic Intergenic -67520 ENSMUSG00000108093.1 ENSMUSG00000108093 ENSMUST00000204031 Gm44102 TEC Interval_137542 chr6 73002190 73004131 + 0 NA Intergenic Intergenic -8883 ENSMUSG00000107546.1 ENSMUSG00000107546 ENSMUST00000204577 Gm20560 antisense Interval_97203 chr2 132214990 132215617 + 0 NA intron (ENSMUSG00000086756.1, intron 2 of 2) antisense-intron (ENSMUSG00000086756.1, intron 2 of 2) 32485 ENSMUSG00000027341.10 ENSMUSG00000027341 ENSMUST00000141813 Tmem230 protein_coding Interval_117593 chr4 124893416 124895391 + 0 NA intron (ENSMUSG00000028876.7, intron 2 of 14) protein_coding-intron (ENSMUSG00000028876.7, intron 2 of 14) 379 ENSMUSG00000085263.1 ENSMUSG00000085263 ENSMUST00000154947 1700125G02Rik antisense Interval_153741 chr8 6013888 6014767 + 0 NA Intergenic Intergenic -19604 ENSMUSG00000109069.1 ENSMUSG00000109069 ENSMUST00000208561 Gm2734 processed_pseudogene Interval_39593 chr12 91305214 91305404 + 0 NA intron (ENSMUSG00000061533.16, intron 10 of 25) protein_coding-intron (ENSMUSG00000061533.16, intron 10 of 13) -18360 ENSMUSG00000113239.1 ENSMUSG00000113239 ENSMUST00000222339 Gm18388 processed_pseudogene Interval_107334 chr3 105943627 105944318 + 0 NA intron (ENSMUSG00000000563.17, intron 6 of 7) protein_coding-intron (ENSMUSG00000000563.17, intron 6 of 7) 10209 ENSMUSG00000000563.17 ENSMUSG00000000563 ENSMUST00000123959 Atp5pb protein_coding Interval_59900 chr15 61195569 61196176 + 0 NA intron (ENSMUSG00000116000.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000116000.1, intron 1 of 2) 11721 ENSMUSG00000116000.1 ENSMUSG00000116000 ENSMUST00000229129 Gm49497 lincRNA Interval_135514 chr6 39796731 39796930 + 0 NA Intergenic Intergenic 9212 ENSMUSG00000029918.9 ENSMUSG00000029918 ENSMUST00000139992 Mrps33 protein_coding Interval_121582 chr5 3608795 3609012 + 0 NA promoter-TSS (ENSMUSG00000005907.14) protein_coding-promoter-TSS (ENSMUSG00000005907.14) -12844 ENSMUSG00000040302.17 ENSMUSG00000040302 ENSMUST00000121877 Rbm48 protein_coding Interval_30386 chr11 94040320 94040641 + 0 NA intron (ENSMUSG00000020859.16, intron 2 of 2) protein_coding-intron (ENSMUSG00000020859.16, intron 3 of 28) -2852 ENSMUSG00000081604.5 ENSMUSG00000081604 ENSMUST00000118048 Gm11518 processed_pseudogene Interval_10307 chr1 168375581 168376672 + 0 NA intron (ENSMUSG00000052534.15, intron 2 of 7) protein_coding-intron (ENSMUSG00000052534.15, intron 2 of 6) -25318 ENSMUSG00000102594.1 ENSMUSG00000102594 ENSMUST00000193594 Gm38381 TEC Interval_167770 chr9 72639468 72640874 + 0 NA Intergenic Intergenic 6724 ENSMUSG00000064735.1 ENSMUSG00000064735 ENSMUST00000082801 Gm23057 snRNA Interval_120548 chr4 149275972 149276198 + 0 NA intron (ENSMUSG00000063077.15, intron 3 of 49) protein_coding-intron (ENSMUSG00000063077.15, intron 3 of 20) 31607 ENSMUSG00000063077.15 ENSMUSG00000063077 ENSMUST00000132072 Kif1b protein_coding Interval_92701 chr2 63085598 63086404 + 0 NA intron (ENSMUSG00000059742.10, intron 2 of 6) protein_coding-intron (ENSMUSG00000059742.10, intron 2 of 15) 98261 ENSMUSG00000059742.10 ENSMUSG00000059742 ENSMUST00000131799 Kcnh7 protein_coding Interval_87570 chr19 53507369 53508215 + 0 NA Intergenic Intergenic -21317 ENSMUSG00000034765.6 ENSMUSG00000034765 ENSMUST00000038287 Dusp5 protein_coding Interval_49060 chr13 107626738 107626920 + 0 NA Intergenic Intergenic -13980 ENSMUSG00000114807.1 ENSMUSG00000114807 ENSMUST00000224826 Gm32090 lincRNA Interval_43605 chr13 34053711 34055003 + 0 NA intron (ENSMUSG00000038286.11, intron 3 of 4) protein_coding-intron (ENSMUSG00000038286.11, intron 4 of 6) -6169 ENSMUSG00000038286.11 ENSMUSG00000038286 ENSMUST00000223251 Bphl protein_coding Interval_82822 chr18 77215470 77215748 + 0 NA intron (ENSMUSG00000025425.18, intron 2 of 7) protein_coding-intron (ENSMUSG00000025425.18, intron 2 of 7) 3718 ENSMUSG00000082784.1 ENSMUSG00000082784 ENSMUST00000118893 Gm15957 processed_pseudogene Interval_144931 chr7 28972469 28973618 + 0 NA exon (ENSMUSG00000053565.10, exon 6 of 6) protein_coding-exon (ENSMUSG00000053565.10, exon 6 of 6) 1793 ENSMUSG00000053565.10 ENSMUSG00000053565 ENSMUST00000208707 Eif3k protein_coding Interval_32414 chr11 107411879 107413678 + 0 NA intron (ENSMUSG00000085245.1, intron 1 of 1) protein_coding-intron (ENSMUSG00000040430.18, intron 1 of 9) 2388 ENSMUSG00000085245.1 ENSMUSG00000085245 ENSMUST00000139941 Gm11713 antisense Interval_72647 chr17 31294451 31297727 + 0 NA promoter-TSS (ENSMUSG00000024036.16) protein_coding-promoter-TSS (ENSMUSG00000024036.16) 600 ENSMUSG00000118295.1 ENSMUSG00000118295 ENSMUST00000236752 Gm8437 transcribed_processed_pseudogene Interval_119148 chr4 135844105 135845205 + 0 NA Intergenic Intergenic -9023 ENSMUSG00000081672.1 ENSMUSG00000081672 ENSMUST00000120937 Gm13000 processed_pseudogene Interval_125425 chr5 67004230 67005562 + 0 NA intron (ENSMUSG00000037736.20, intron 8 of 21) protein_coding-intron (ENSMUSG00000037736.20, intron 8 of 20) -13689 ENSMUSG00000086964.1 ENSMUSG00000086964 ENSMUST00000150616 Gm15948 antisense Interval_123800 chr5 35604515 35604811 + 0 NA promoter-TSS (ENSMUSG00000029098.17) protein_coding-promoter-TSS (ENSMUSG00000029098.17) -15900 ENSMUSG00000055061.5 ENSMUSG00000055061 ENSMUST00000124643 4931431C16Rik antisense Interval_23666 chr11 24233087 24234117 + 0 NA Intergenic Intergenic -30978 ENSMUSG00000086117.1 ENSMUSG00000086117 ENSMUST00000149592 Gm12065 lincRNA Interval_137216 chr6 70146878 70147947 + 0 NA TTS (ENSMUSG00000096560.1) miRNA-TTS (ENSMUSG00000096560.1) 633 ENSMUSG00000096560.1 ENSMUSG00000096560 ENSMUST00000103905 Gm24096 miRNA Interval_157887 chr8 75241351 75241710 + 0 NA Intergenic Intergenic 27586 ENSMUSG00000034472.13 ENSMUSG00000034472 ENSMUST00000132133 Rasd2 protein_coding Interval_2813 chr1 45768368 45770141 + 0 NA exon (ENSMUSG00000100843.1, exon 1 of 1) processed_pseudogene-exon (ENSMUSG00000100843.1, exon 1 of 1) 917 ENSMUSG00000100843.1 ENSMUSG00000100843 ENSMUST00000187682 Gm8307 processed_pseudogene Interval_55300 chr14 81479218 81479917 + 0 NA Intergenic Intergenic 109522 ENSMUSG00000115465.1 ENSMUSG00000115465 ENSMUST00000228079 Cyp2c73-ps processed_pseudogene Interval_64440 chr16 11389041 11390020 + 0 NA intron (ENSMUSG00000071669.14, intron 4 of 20) protein_coding-intron (ENSMUSG00000071669.14, intron 4 of 7) 66622 ENSMUSG00000071669.14 ENSMUSG00000071669 ENSMUST00000134941 Snx29 protein_coding Interval_67844 chr16 57751325 57751662 + 0 NA TTS (ENSMUSG00000068196.5) protein_coding-TTS (ENSMUSG00000068196.5) 3222 ENSMUSG00000068196.5 ENSMUSG00000068196 ENSMUST00000232382 Col8a1 protein_coding Interval_172174 chrX 8192114 8193670 + 0 NA promoter-TSS (ENSMUSG00000031168.14) protein_coding-promoter-TSS (ENSMUSG00000031168.14) 6 ENSMUSG00000031168.14 ENSMUSG00000031168 ENSMUST00000149495 Ebp protein_coding Interval_107030 chr3 103066360 103067347 + 0 NA TTS (ENSMUSG00000027852.14) protein_coding-TTS (ENSMUSG00000027852.14) -4321 ENSMUSG00000104671.1 ENSMUSG00000104671 ENSMUST00000196302 Gm43062 lincRNA Interval_17312 chr10 75780660 75781583 + 0 NA promoter-TSS (ENSMUSG00000092360.1) protein_coding-promoter-TSS (ENSMUSG00000092360.1) -167 ENSMUSG00000092360.1 ENSMUSG00000092360 ENSMUST00000173512 Gm20441 protein_coding Interval_174228 chrX 140431658 140432334 + 0 NA exon (ENSMUSG00000042425.18, exon 15 of 15) protein_coding-exon (ENSMUSG00000042425.18, exon 15 of 15) 14386 ENSMUSG00000082031.1 ENSMUSG00000082031 ENSMUST00000117903 Gm8097 processed_pseudogene Interval_63683 chr15 102770835 102771956 + 0 NA Intergenic Intergenic 23976 ENSMUSG00000116263.1 ENSMUSG00000116263 ENSMUST00000229081 Gm49473 processed_pseudogene Interval_172705 chrX 44043115 44044216 + 0 NA Intergenic Intergenic 219741 ENSMUSG00000081036.1 ENSMUSG00000081036 ENSMUST00000117508 Gm14628 processed_pseudogene Interval_104948 chr3 79221394 79222100 + 0 NA intron (ENSMUSG00000062232.14, intron 1 of 29) protein_coding-intron (ENSMUSG00000062232.14, intron 1 of 29) 8828 ENSMUSG00000104585.1 ENSMUSG00000104585 ENSMUST00000200412 4921511C10Rik antisense Interval_30352 chr11 93807210 93807447 + 0 NA Intergenic Intergenic 68815 ENSMUSG00000054079.12 ENSMUSG00000054079 ENSMUST00000134807 Utp18 protein_coding Interval_23811 chr11 26498644 26498920 + 0 NA intron (ENSMUSG00000064090.14, intron 7 of 11) protein_coding-intron (ENSMUSG00000064090.14, intron 8 of 12) 89575 ENSMUSG00000081811.1 ENSMUSG00000081811 ENSMUST00000118404 Gm12713 processed_pseudogene Interval_73926 chr17 45526609 45527277 + 0 NA intron (ENSMUSG00000023949.7, intron 1 of 4) protein_coding-intron (ENSMUSG00000023949.7, intron 1 of 4) -6110 ENSMUSG00000023949.7 ENSMUSG00000023949 ENSMUST00000233588 Tcte1 protein_coding Interval_120015 chr4 141382277 141383322 + 0 NA exon (ENSMUSG00000006218.4, exon 6 of 7) protein_coding-exon (ENSMUSG00000006218.4, exon 6 of 7) 12028 ENSMUSG00000033770.13 ENSMUSG00000033770 ENSMUST00000133676 Clcnka protein_coding Interval_106077 chr3 92653701 92654093 + 0 NA Intergenic Intergenic 3029 ENSMUSG00000027923.3 ENSMUSG00000027923 ENSMUST00000029531 Lce1b protein_coding Interval_109160 chr3 137153344 137153764 + 0 NA Intergenic Intergenic 85662 ENSMUSG00000065906.1 ENSMUSG00000065906 ENSMUST00000083972 Gm26107 snRNA Interval_112305 chr4 40233141 40234512 + 0 NA intron (ENSMUSG00000040296.15, intron 1 of 14) protein_coding-intron (ENSMUSG00000040296.15, intron 2 of 17) 5999 ENSMUSG00000040296.15 ENSMUSG00000040296 ENSMUST00000149539 Ddx58 protein_coding Interval_39548 chr12 90259756 90260525 + 0 NA intron (ENSMUSG00000066392.12, intron 4 of 5) protein_coding-intron (ENSMUSG00000066392.12, intron 18 of 19) -104112 ENSMUSG00000113884.1 ENSMUSG00000113884 ENSMUST00000222858 Gm2270 lincRNA Interval_170558 chr9 108682086 108682462 + 0 NA intron (ENSMUSG00000032602.6, intron 6 of 8) protein_coding-intron (ENSMUSG00000032602.6, intron 6 of 8) 9778 ENSMUSG00000032602.6 ENSMUSG00000032602 ENSMUST00000195260 Slc25a20 protein_coding Interval_5437 chr1 88763583 88763937 + 0 NA Intergenic Intergenic 8870 ENSMUSG00000097398.2 ENSMUSG00000097398 ENSMUST00000180596 Platr5 lincRNA Interval_122663 chr5 24537672 24537933 + 0 NA exon (ENSMUSG00000038204.13, exon 3 of 6) protein_coding-exon (ENSMUSG00000038204.13, exon 3 of 6) 2790 ENSMUSG00000038204.13 ENSMUSG00000038204 ENSMUST00000119657 Asb10 protein_coding Interval_104379 chr3 64873270 64873623 + 0 NA Intergenic Intergenic 21150 ENSMUSG00000088824.1 ENSMUSG00000088824 ENSMUST00000158199 Gm25222 snoRNA Interval_25166 chr11 44685938 44686689 + 0 NA intron (ENSMUSG00000057098.14, intron 6 of 15) protein_coding-intron (ENSMUSG00000057098.14, intron 6 of 15) -23637 ENSMUSG00000085784.1 ENSMUSG00000085784 ENSMUST00000130493 Gm12158 antisense Interval_9023 chr1 153133379 153133663 + 0 NA intron (ENSMUSG00000026479.13, intron 16 of 22) protein_coding-intron (ENSMUSG00000026479.13, intron 17 of 23) -6287 ENSMUSG00000026479.13 ENSMUSG00000026479 ENSMUST00000188831 Lamc2 protein_coding Interval_38530 chr12 79906663 79907238 + 0 NA Intergenic Intergenic 18544 ENSMUSG00000112765.1 ENSMUSG00000112765 ENSMUST00000219857 9430078K24Rik lincRNA Interval_173789 chrX 104199590 104201547 + 0 NA intron (ENSMUSG00000046449.15, intron 1 of 4) protein_coding-intron (ENSMUSG00000046449.15, intron 1 of 3) 617 ENSMUSG00000046449.15 ENSMUSG00000046449 ENSMUST00000056502 Nexmif protein_coding Interval_28481 chr11 76272634 76272815 + 0 NA intron (ENSMUSG00000020844.6, intron 4 of 7) protein_coding-intron (ENSMUSG00000020844.6, intron 4 of 7) 23512 ENSMUSG00000038046.4 ENSMUSG00000038046 ENSMUST00000155526 Mrm3 protein_coding Interval_103666 chr3 51474133 51474763 + 0 NA exon (ENSMUSG00000063273.11, exon 20 of 20) protein_coding-exon (ENSMUSG00000063273.11, exon 20 of 20) -9472 ENSMUSG00000027739.9 ENSMUSG00000027739 ENSMUST00000054387 Rab33b protein_coding Interval_130063 chr5 124014095 124014318 + 0 NA intron (ENSMUSG00000066278.6, intron 1 of 3) protein_coding-intron (ENSMUSG00000066278.6, intron 1 of 3) 9558 ENSMUSG00000102725.2 ENSMUSG00000102725 ENSMUST00000192309 Gm37939 TEC Interval_102144 chr3 18598551 18599294 + 0 NA Intergenic Intergenic 11909 ENSMUSG00000104091.1 ENSMUSG00000104091 ENSMUST00000192198 Gm37317 processed_pseudogene Interval_143423 chr7 6668623 6669019 + 0 NA Intergenic Intergenic -6453 ENSMUSG00000108113.2 ENSMUSG00000108113 ENSMUST00000203156 Zim2 processed_transcript Interval_71739 chr17 25796561 25797612 + 0 NA promoter-TSS (ENSMUSG00000002274.13) protein_coding-promoter-TSS (ENSMUSG00000002274.13) -118 ENSMUSG00000002274.13 ENSMUSG00000002274 ENSMUST00000002344 Metrn protein_coding Interval_53837 chr14 62492264 62492928 + 0 NA intron (ENSMUSG00000100486.7, intron 2 of 3) protein_coding-intron (ENSMUSG00000100486.7, intron 2 of 3) 22699 ENSMUSG00000114292.1 ENSMUSG00000114292 ENSMUST00000224336 Gm6076 processed_pseudogene Interval_89577 chr2 22935102 22935693 + 0 NA promoter-TSS (ENSMUSG00000026784.14) protein_coding-promoter-TSS (ENSMUSG00000026784.14) -21565 ENSMUSG00000081861.1 ENSMUSG00000081861 ENSMUST00000121960 Gm14441 processed_pseudogene Interval_93376 chr2 72499100 72500320 + 0 NA Intergenic Intergenic 23457 ENSMUSG00000055612.15 ENSMUSG00000055612 ENSMUST00000137880 Cdca7 protein_coding Interval_27459 chr11 67976008 67976334 + 0 NA intron (ENSMUSG00000020903.13, intron 3 of 4) protein_coding-intron (ENSMUSG00000020903.13, intron 3 of 7) 9679 ENSMUSG00000020903.13 ENSMUSG00000020903 ENSMUST00000142649 Stx8 protein_coding Interval_93024 chr2 69639708 69640668 + 0 NA Intergenic Intergenic -7042 ENSMUSG00000063145.10 ENSMUSG00000063145 ENSMUST00000127806 Bbs5 protein_coding Interval_34199 chr11 121236429 121237719 + 0 NA promoter-TSS (ENSMUSG00000000056.7) protein_coding-promoter-TSS (ENSMUSG00000000056.7) -7464 ENSMUSG00000000056.7 ENSMUSG00000000056 ENSMUST00000151088 Narf protein_coding Interval_50590 chr14 16237364 16237631 + 0 NA Intergenic Intergenic 5790 ENSMUSG00000021786.13 ENSMUSG00000021786 ENSMUST00000148121 Oxsm protein_coding Interval_39883 chr12 99352244 99352704 + 0 NA intron (ENSMUSG00000033731.9, intron 2 of 3) protein_coding-intron (ENSMUSG00000033713.12, intron 2 of 5) 9554 ENSMUSG00000113106.1 ENSMUSG00000113106 ENSMUST00000221888 Gm47139 TEC Interval_17839 chr10 80335389 80336236 + 0 NA TTS (ENSMUSG00000035504.16) protein_coding-TTS (ENSMUSG00000035504.16) 5667 ENSMUSG00000035504.16 ENSMUSG00000035504 ENSMUST00000040081 Reep6 protein_coding Interval_94554 chr2 92182856 92185592 + 0 NA promoter-TSS (ENSMUSG00000058318.15) protein_coding-promoter-TSS (ENSMUSG00000058318.15) -78 ENSMUSG00000058318.15 ENSMUSG00000058318 ENSMUST00000161044 Phf21a protein_coding Interval_113421 chr4 54854034 54854269 + 0 NA exon (ENSMUSG00000082111.1, exon 1 of 1) processed_pseudogene-exon (ENSMUSG00000082111.1, exon 1 of 1) 1023 ENSMUSG00000082111.1 ENSMUSG00000082111 ENSMUST00000120731 Gm12479 processed_pseudogene Interval_106255 chr3 94947994 94948443 + 0 NA Intergenic Intergenic -5891 ENSMUSG00000005774.12 ENSMUSG00000005774 ENSMUST00000142708 Rfx5 protein_coding Interval_116892 chr4 118042770 118043194 + 0 NA intron (ENSMUSG00000028538.12, intron 2 of 10) protein_coding-intron (ENSMUSG00000028538.12, intron 3 of 11) -11100 ENSMUSG00000028538.12 ENSMUSG00000028538 ENSMUST00000126336 St3gal3 protein_coding Interval_32203 chr11 106111032 106111550 + 0 NA intron (ENSMUSG00000020700.11, intron 3 of 15) protein_coding-intron (ENSMUSG00000020700.11, intron 3 of 15) 16060 ENSMUSG00000085229.1 ENSMUSG00000085229 ENSMUST00000140380 Gm11672 antisense Interval_101745 chr3 9346754 9348105 + 0 NA Intergenic Intergenic -54746 ENSMUSG00000088229.1 ENSMUSG00000088229 ENSMUST00000157604 Gm22604 misc_RNA Interval_143275 chr7 4906277 4907170 + 0 NA promoter-TSS (ENSMUSG00000110221.1) protein_coding-promoter-TSS (ENSMUSG00000110221.1) -207 ENSMUSG00000110221.1 ENSMUSG00000110221 ENSMUST00000210663 Gm36210 protein_coding Interval_72243 chr17 28776910 28777373 + 0 NA TTS (ENSMUSG00000004864.13) protein_coding-TTS (ENSMUSG00000004864.13) 7844 ENSMUSG00000004864.13 ENSMUSG00000004864 ENSMUST00000004986 Mapk13 protein_coding Interval_174614 chrX 160133802 160134463 + 0 NA intron (ENSMUSG00000031299.10, intron 1 of 4) protein_coding-intron (ENSMUSG00000031299.10, intron 1 of 10) -5167 ENSMUSG00000031299.10 ENSMUSG00000031299 ENSMUST00000127535 Pdha1 protein_coding Interval_34607 chr12 7777416 7778352 + 0 NA intron (ENSMUSG00000112323.1, intron 1 of 3) lincRNA-intron (ENSMUSG00000112323.1, intron 1 of 3) 81807 ENSMUSG00000112323.1 ENSMUSG00000112323 ENSMUST00000218503 Gm32828 lincRNA Interval_104592 chr3 68594211 68594784 + 0 NA intron (ENSMUSG00000027777.15, intron 1 of 6) protein_coding-intron (ENSMUSG00000027777.15, intron 2 of 7) -46789 ENSMUSG00000084617.1 ENSMUSG00000084617 ENSMUST00000122668 Gm22073 snRNA Interval_169295 chr9 96212530 96213751 + 0 NA intron (ENSMUSG00000032411.15, intron 2 of 11) protein_coding-intron (ENSMUSG00000032411.15, intron 2 of 12) -5990 ENSMUSG00000103611.1 ENSMUSG00000103611 ENSMUST00000192006 Gm37195 TEC Interval_36477 chr12 45555328 45555542 + 0 NA Intergenic Intergenic 17852 ENSMUSG00000112768.1 ENSMUSG00000112768 ENSMUST00000218809 Gm48517 unprocessed_pseudogene Interval_111820 chr4 31418678 31419691 + 0 NA Intergenic Intergenic 38712 ENSMUSG00000082254.1 ENSMUSG00000082254 ENSMUST00000118967 Gm11922 processed_pseudogene Interval_99044 chr2 156825038 156825872 + 0 NA Intergenic Intergenic 14437 ENSMUSG00000087179.8 ENSMUSG00000087179 ENSMUST00000134838 Gm14230 lincRNA Interval_128109 chr5 111006391 111006797 + 0 NA intron (ENSMUSG00000033209.17, intron 2 of 22) protein_coding-intron (ENSMUSG00000033209.17, intron 2 of 23) 2252 ENSMUSG00000083771.1 ENSMUSG00000083771 ENSMUST00000118677 Gm15988 processed_pseudogene Interval_14392 chr10 32590569 32591657 + 0 NA intron (ENSMUSG00000069670.8, intron 1 of 3) protein_coding-intron (ENSMUSG00000069670.8, intron 1 of 6) 48373 ENSMUSG00000112914.1 ENSMUSG00000112914 ENSMUST00000220196 Gm47702 TEC Interval_73331 chr17 36248291 36249310 + 0 NA promoter-TSS (ENSMUSG00000092392.1) lincRNA-promoter-TSS (ENSMUSG00000092392.1) -21 ENSMUSG00000092392.1 ENSMUSG00000092392 ENSMUST00000173141 Gm20546 lincRNA Interval_23285 chr11 21168234 21170216 + 0 NA Intergenic Intergenic 28751 ENSMUSG00000088223.1 ENSMUSG00000088223 ENSMUST00000157598 Gm22600 misc_RNA Interval_27631 chr11 69150203 69151143 + 0 NA Intergenic Intergenic -6316 ENSMUSG00000032807.5 ENSMUSG00000032807 ENSMUST00000036424 Alox12b protein_coding Interval_109721 chr3 146293708 146294134 + 0 NA Intergenic Intergenic -30499 ENSMUSG00000105209.1 ENSMUSG00000105209 ENSMUST00000197740 Gm43334 TEC Interval_164301 chr9 35139095 35140632 + 0 NA intron (ENSMUSG00000032040.15, intron 2 of 6) protein_coding-intron (ENSMUSG00000032040.15, intron 2 of 5) -4773 ENSMUSG00000088056.1 ENSMUSG00000088056 ENSMUST00000157431 Gm24262 snoRNA Interval_106863 chr3 101376628 101377680 + 0 NA promoter-TSS (ENSMUSG00000042035.11) protein_coding-promoter-TSS (ENSMUSG00000042035.11) 71 ENSMUSG00000042035.11 ENSMUSG00000042035 ENSMUST00000195164 Igsf3 protein_coding Interval_116010 chr4 106958333 106958823 + 0 NA intron (ENSMUSG00000061887.14, intron 1 of 13) protein_coding-intron (ENSMUSG00000061887.14, intron 4 of 17) 63921 ENSMUSG00000085581.1 ENSMUSG00000085581 ENSMUST00000129617 Gm12786 antisense Interval_158773 chr8 86272073 86273073 + 0 NA Intergenic Intergenic -19928 ENSMUSG00000065737.1 ENSMUSG00000065737 ENSMUST00000083803 Gm24490 snRNA Interval_166839 chr9 63138577 63138861 + 0 NA exon (ENSMUSG00000022245.15, exon 9 of 9) protein_coding-exon (ENSMUSG00000022245.15, exon 9 of 9) 5436 ENSMUSG00000094201.1 ENSMUSG00000094201 ENSMUST00000179535 Gm25064 snRNA Interval_47160 chr13 76725670 76726004 + 0 NA intron (ENSMUSG00000021596.16, intron 5 of 7) protein_coding-intron (ENSMUSG00000021596.16, intron 5 of 20) 29218 ENSMUSG00000090027.1 ENSMUSG00000090027 ENSMUST00000159703 Gm15740 processed_pseudogene Interval_133501 chr6 5954831 5955630 + 0 NA intron (ENSMUSG00000029757.16, intron 10 of 16) protein_coding-intron (ENSMUSG00000029757.16, intron 9 of 15) 22163 ENSMUSG00000085416.1 ENSMUSG00000085416 ENSMUST00000130004 1700019G24Rik antisense Interval_47197 chr13 77803716 77804540 + 0 NA intron (ENSMUSG00000064138.14, intron 4 of 10) protein_coding-intron (ENSMUSG00000064138.14, intron 3 of 9) 102095 ENSMUSG00000064138.14 ENSMUSG00000064138 ENSMUST00000224013 Fam172a protein_coding Interval_152608 chr7 135169799 135170293 + 0 NA intron (ENSMUSG00000058325.6, intron 51 of 51) protein_coding-intron (ENSMUSG00000058325.6, intron 51 of 51) 25956 ENSMUSG00000100717.6 ENSMUSG00000100717 ENSMUST00000187267 1700120G07Rik lincRNA Interval_155088 chr8 26345011 26345546 + 0 NA intron (ENSMUSG00000109682.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000109682.1, intron 1 of 2) -32944 ENSMUSG00000110229.1 ENSMUSG00000110229 ENSMUST00000209523 Gm31784 lincRNA Interval_140409 chr6 117920786 117921527 + 0 NA intron (ENSMUSG00000042079.13, intron 4 of 4) protein_coding-intron (ENSMUSG00000042079.13, intron 3 of 3) -2545 ENSMUSG00000042079.13 ENSMUSG00000042079 ENSMUST00000180341 Hnrnpf protein_coding Interval_152696 chr7 136447197 136447745 + 0 NA Intergenic Intergenic 61862 ENSMUSG00000087869.1 ENSMUSG00000087869 ENSMUST00000157244 Gm24444 misc_RNA Interval_92198 chr2 55981043 55981381 + 0 NA Intergenic Intergenic -8218 ENSMUSG00000082499.1 ENSMUSG00000082499 ENSMUST00000120242 Gm13615 processed_pseudogene Interval_129020 chr5 116789526 116791359 + 0 NA intron (ENSMUSG00000106909.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000106909.1, intron 1 of 2) -20789 ENSMUSG00000107237.1 ENSMUSG00000107237 ENSMUST00000201443 Gm29926 lincRNA Interval_141038 chr6 124541752 124542788 + 0 NA promoter-TSS (ENSMUSG00000038521.17) protein_coding-promoter-TSS (ENSMUSG00000038521.17) 39 ENSMUSG00000038521.17 ENSMUSG00000038521 ENSMUST00000162844 C1s1 protein_coding Interval_68142 chr16 65641214 65641446 + 0 NA Intergenic Intergenic -27911 ENSMUSG00000116578.1 ENSMUSG00000116578 ENSMUST00000232570 Gm49633 processed_pseudogene Interval_10344 chr1 169747424 169747779 + 0 NA promoter-TSS (ENSMUSG00000038530.11) protein_coding-promoter-TSS (ENSMUSG00000038530.11) 22 ENSMUSG00000038530.11 ENSMUSG00000038530 ENSMUST00000132567 Rgs4 protein_coding Interval_130527 chr5 128578506 128579785 + 0 NA TTS (ENSMUSG00000072591.10) lincRNA-TTS (ENSMUSG00000072591.10) 18811 ENSMUSG00000105059.1 ENSMUSG00000105059 ENSMUST00000199981 Gm42498 TEC Interval_158828 chr8 86904867 86905164 + 0 NA intron (ENSMUSG00000098534.1, intron 2 of 2) lincRNA-intron (ENSMUSG00000098534.1, intron 2 of 2) 2562 ENSMUSG00000098534.1 ENSMUSG00000098534 ENSMUST00000183752 Gm27167 lincRNA Interval_158369 chr8 83087277 83088125 + 0 NA promoter-TSS (ENSMUSG00000109876.1) antisense-promoter-TSS (ENSMUSG00000109876.1) -744 ENSMUSG00000109876.1 ENSMUSG00000109876 ENSMUST00000211485 Gm45449 antisense Interval_94012 chr2 80689537 80689874 + 0 NA Intergenic Intergenic -17884 ENSMUSG00000077404.1 ENSMUSG00000077404 ENSMUST00000104216 Gm25420 snoRNA Interval_71926 chr17 27047685 27048791 + 0 NA TTS (ENSMUSG00000117799.1) lincRNA-TTS (ENSMUSG00000117799.1) 3176 ENSMUSG00000117799.1 ENSMUSG00000117799 ENSMUST00000236359 Gm50295 lincRNA Interval_164480 chr9 37401512 37402232 + 0 NA promoter-TSS (ENSMUSG00000032125.21) protein_coding-promoter-TSS (ENSMUSG00000032125.21) -174 ENSMUSG00000032125.21 ENSMUSG00000032125 ENSMUST00000215777 Robo4 protein_coding Interval_88033 chr19 58136291 58136827 + 0 NA Intergenic Intergenic -40528 ENSMUSG00000117871.1 ENSMUSG00000117871 ENSMUST00000235250 Gm50287 lincRNA Interval_107980 chr3 118626637 118626901 + 0 NA intron (ENSMUSG00000033308.16, intron 2 of 4) protein_coding-intron (ENSMUSG00000033308.16, intron 2 of 22) 64583 ENSMUSG00000033308.16 ENSMUSG00000033308 ENSMUST00000129148 Dpyd protein_coding Interval_147903 chr7 75370465 75371669 + 0 NA Intergenic Intergenic 5012 ENSMUSG00000069196.6 ENSMUSG00000069196 ENSMUST00000091506 Gm10161 processed_pseudogene Interval_1574 chr1 27158998 27160354 + 0 NA Intergenic Intergenic 177092 ENSMUSG00000100310.1 ENSMUSG00000100310 ENSMUST00000188432 Gm19641 processed_pseudogene Interval_1590 chr1 28541256 28541531 + 0 NA Intergenic Intergenic -28525 ENSMUSG00000103241.1 ENSMUSG00000103241 ENSMUST00000193585 Gm38089 TEC Interval_72638 chr17 31246928 31247795 + 0 NA promoter-TSS (ENSMUSG00000117899.1) antisense-promoter-TSS (ENSMUSG00000117899.1) 58 ENSMUSG00000117899.1 ENSMUSG00000117899 ENSMUST00000237156 Gm50218 antisense Interval_140767 chr6 121144200 121145226 + 0 NA Intergenic Intergenic 27915 ENSMUSG00000108096.1 ENSMUSG00000108096 ENSMUST00000203344 Minpp1-ps processed_pseudogene Interval_113739 chr4 57936052 57936616 + 0 NA Intergenic Intergenic -20037 ENSMUSG00000052117.5 ENSMUSG00000052117 ENSMUST00000063816 D630039A03Rik protein_coding Interval_124101 chr5 38307421 38308201 + 0 NA Intergenic Intergenic -11556 ENSMUSG00000039358.3 ENSMUSG00000039358 ENSMUST00000041646 Drd5 protein_coding Interval_2083 chr1 36297313 36297559 + 0 NA Intergenic Intergenic -10322 ENSMUSG00000037447.16 ENSMUSG00000037447 ENSMUST00000141121 Arid5a protein_coding Interval_55665 chr14 98601026 98601263 + 0 NA Intergenic Intergenic -23046 ENSMUSG00000096444.1 ENSMUSG00000096444 ENSMUST00000180098 Gm26139 snRNA Interval_107760 chr3 113590509 113590722 + 0 NA intron (ENSMUSG00000074264.12, intron 1 of 3) protein_coding-intron (ENSMUSG00000074264.12, intron 1 of 3) 16084 ENSMUSG00000074264.12 ENSMUSG00000074264 ENSMUST00000174147 Amy1 protein_coding Interval_147730 chr7 73113252 73113975 + 0 NA Intergenic Intergenic -10838 ENSMUSG00000108345.1 ENSMUSG00000108345 ENSMUST00000205892 4933435G04Rik lincRNA Interval_2531 chr1 39979219 39979901 + 0 NA intron (ENSMUSG00000026074.15, intron 5 of 31) protein_coding-intron (ENSMUSG00000026074.15, intron 5 of 30) 70808 ENSMUSG00000102985.1 ENSMUSG00000102985 ENSMUST00000193054 4930456G14Rik TEC Interval_4726 chr1 77756102 77756576 + 0 NA Intergenic Intergenic 142107 ENSMUSG00000065215.1 ENSMUSG00000065215 ENSMUST00000083281 Gm26263 snRNA Interval_61286 chr15 80571904 80572884 + 0 NA promoter-TSS (ENSMUSG00000042351.9) protein_coding-promoter-TSS (ENSMUSG00000042351.9) -7238 ENSMUSG00000050439.7 ENSMUSG00000050439 ENSMUST00000229110 Enthd1 protein_coding Interval_130761 chr5 130222125 130223363 + 0 NA exon (ENSMUSG00000107143.1, exon 1 of 1) protein_coding-intron (ENSMUSG00000053094.15, intron 1 of 6) 321 ENSMUSG00000107143.1 ENSMUSG00000107143 ENSMUST00000202719 Gm6598 antisense Interval_110333 chr3 157007098 157007319 + 0 NA intron (ENSMUSG00000040037.13, intron 2 of 2) protein_coding-intron (ENSMUSG00000040037.13, intron 2 of 6) 6791 ENSMUSG00000106018.1 ENSMUSG00000106018 ENSMUST00000198749 Gm43527 TEC Interval_119562 chr4 138379171 138379388 + 0 NA Intergenic Intergenic -15919 ENSMUSG00000046109.6 ENSMUSG00000046109 ENSMUST00000062902 AB041806 antisense Interval_71176 chr17 20865240 20865731 + 0 NA Intergenic Intergenic 25035 ENSMUSG00000045417.2 ENSMUSG00000045417 ENSMUST00000053974 Vmn1r230 protein_coding Interval_74083 chr17 46496313 46498510 + 0 NA intron (ENSMUSG00000040658.7, intron 1 of 3) protein_coding-intron (ENSMUSG00000040658.7, intron 1 of 3) 700 ENSMUSG00000040658.7 ENSMUSG00000040658 ENSMUST00000046497 Dnph1 protein_coding Interval_54343 chr14 67817967 67818734 + 0 NA intron (ENSMUSG00000044447.5, intron 17 of 17) protein_coding-intron (ENSMUSG00000044447.5, intron 17 of 51) 41395 ENSMUSG00000098866.1 ENSMUSG00000098866 ENSMUST00000183732 Mir6539 miRNA Interval_26388 chr11 57563392 57563867 + 0 NA Intergenic Intergenic -8883 ENSMUSG00000086028.1 ENSMUSG00000086028 ENSMUST00000128521 Gm12243 lincRNA Interval_124276 chr5 43391466 43392097 + 0 NA Intergenic Intergenic 15334 ENSMUSG00000107244.1 ENSMUSG00000107244 ENSMUST00000201312 Gm43699 lincRNA Interval_135170 chr6 37171158 37171753 + 0 NA intron (ENSMUSG00000038665.15, intron 1 of 32) protein_coding-intron (ENSMUSG00000038665.15, intron 2 of 32) 128729 ENSMUSG00000038665.15 ENSMUSG00000038665 ENSMUST00000136457 Dgki protein_coding Interval_24173 chr11 30909367 30909623 + 0 NA intron (ENSMUSG00000020305.13, intron 1 of 9) protein_coding-intron (ENSMUSG00000020305.13, intron 1 of 9) -1575 ENSMUSG00000084146.1 ENSMUSG00000084146 ENSMUST00000120359 Gm12104 processed_pseudogene Interval_157594 chr8 71602028 71603473 + 0 NA TTS (ENSMUSG00000043243.15) protein_coding-TTS (ENSMUSG00000043243.15) 5102 ENSMUSG00000043243.15 ENSMUSG00000043243 ENSMUST00000125339 Fam129c protein_coding Interval_97355 chr2 135329996 135331057 + 0 NA intron (ENSMUSG00000051177.16, intron 15 of 32) protein_coding-intron (ENSMUSG00000051177.16, intron 15 of 31) -114910 ENSMUSG00000085247.1 ENSMUSG00000085247 ENSMUST00000138303 4930545L23Rik antisense Interval_16067 chr10 60456636 60457596 + 0 NA intron (ENSMUSG00000012819.15, intron 12 of 65) protein_coding-intron (ENSMUSG00000012819.15, intron 12 of 66) 57212 ENSMUSG00000090439.3 ENSMUSG00000090439 ENSMUST00000218360 Gm17455 protein_coding Interval_48609 chr13 100650642 100651823 + 0 NA promoter-TSS (ENSMUSG00000021635.14) protein_coding-promoter-TSS (ENSMUSG00000021635.14) -148 ENSMUSG00000078941.9 ENSMUSG00000078941 ENSMUST00000190210 Ak6 protein_coding Interval_128376 chr5 112941062 112941635 + 0 NA intron (ENSMUSG00000042249.11, intron 12 of 20) protein_coding-intron (ENSMUSG00000042249.11, intron 12 of 20) -68852 ENSMUSG00000072720.9 ENSMUSG00000072720 ENSMUST00000183273 Myo18b protein_coding Interval_13257 chr10 13648428 13648659 + 0 NA intron (ENSMUSG00000019806.13, intron 4 of 4) protein_coding-intron (ENSMUSG00000019806.13, intron 4 of 4) 21345 ENSMUSG00000112055.1 ENSMUSG00000112055 ENSMUST00000219684 Gm48773 lincRNA Interval_119551 chr4 138333209 138333513 + 0 NA Intergenic Intergenic -7121 ENSMUSG00000028756.12 ENSMUSG00000028756 ENSMUST00000105817 Pink1 protein_coding Interval_161090 chr8 117390698 117391408 + 0 NA intron (ENSMUSG00000034390.16, intron 3 of 10) protein_coding-intron (ENSMUSG00000034390.16, intron 3 of 20) -32363 ENSMUSG00000034390.16 ENSMUSG00000034390 ENSMUST00000212884 Cmip protein_coding Interval_128137 chr5 111228114 111229520 + 0 NA intron (ENSMUSG00000033209.17, intron 8 of 22) protein_coding-intron (ENSMUSG00000033209.17, intron 9 of 23) 31677 ENSMUSG00000105027.1 ENSMUSG00000105027 ENSMUST00000197532 Gm43676 TEC Interval_110674 chr4 6190707 6191722 + 0 NA intron (ENSMUSG00000028243.5, intron 1 of 7) protein_coding-intron (ENSMUSG00000028243.5, intron 1 of 7) 116 ENSMUSG00000028243.5 ENSMUSG00000028243 ENSMUST00000029907 Ubxn2b protein_coding Interval_106551 chr3 97172831 97173061 + 0 NA exon (ENSMUSG00000028093.15, exon 1 of 3) protein_coding-exon (ENSMUSG00000028093.15, exon 1 of 3) 13850 ENSMUSG00000028093.15 ENSMUSG00000028093 ENSMUST00000198329 Acp6 protein_coding Interval_119979 chr4 141207344 141208143 + 0 NA Intergenic Intergenic -10903 ENSMUSG00000073733.4 ENSMUSG00000073733 ENSMUST00000151475 Cplane2 protein_coding Interval_43524 chr13 32683765 32683931 + 0 NA Intergenic Intergenic 69832 ENSMUSG00000118652.1 ENSMUSG00000118652 ENSMUST00000239419 AL645799.1 lincRNA Interval_144517 chr7 25642733 25643252 + 0 NA intron (ENSMUSG00000060376.7, intron 1 of 8) protein_coding-intron (ENSMUSG00000060376.7, intron 1 of 8) -11249 ENSMUSG00000060376.7 ENSMUSG00000060376 ENSMUST00000071329 Bckdha protein_coding Interval_120014 chr4 141373716 141374404 + 0 NA intron (ENSMUSG00000006218.4, intron 1 of 6) protein_coding-intron (ENSMUSG00000006218.4, intron 1 of 6) 5840 ENSMUSG00000006218.4 ENSMUSG00000006218 ENSMUST00000006380 Fam131c protein_coding Interval_5422 chr1 88668728 88670037 + 0 NA Intergenic Intergenic 13074 ENSMUSG00000100367.1 ENSMUSG00000100367 ENSMUST00000186042 Gm29336 lincRNA Interval_38776 chr12 82255597 82257255 + 0 NA promoter-TSS (ENSMUSG00000042700.16) protein_coding-promoter-TSS (ENSMUSG00000042700.16) 86950 ENSMUSG00000042700.16 ENSMUSG00000042700 ENSMUST00000221327 Sipa1l1 protein_coding Interval_43993 chr13 38825385 38826454 + 0 NA promoter-TSS (ENSMUSG00000114319.1) lincRNA-promoter-TSS (ENSMUSG00000114319.1) -164 ENSMUSG00000114319.1 ENSMUSG00000114319 ENSMUST00000225304 Gm47509 lincRNA Interval_25155 chr11 44606904 44607177 + 0 NA Intergenic Intergenic 9976 ENSMUSG00000102563.1 ENSMUSG00000102563 ENSMUST00000191765 Gm37695 TEC Interval_11117 chr1 179483328 179483644 + 0 NA intron (ENSMUSG00000055067.15, intron 1 of 11) protein_coding-intron (ENSMUSG00000055067.15, intron 1 of 5) 34519 ENSMUSG00000055067.15 ENSMUSG00000055067 ENSMUST00000194237 Smyd3 protein_coding Interval_124466 chr5 48420454 48421123 + 0 NA intron (ENSMUSG00000029088.16, intron 2 of 7) protein_coding-intron (ENSMUSG00000029088.16, intron 3 of 8) 48355 ENSMUSG00000029089.8 ENSMUSG00000029089 ENSMUST00000199818 5730480H06Rik protein_coding Interval_110248 chr3 154831815 154832091 + 0 NA intron (ENSMUSG00000040086.13, intron 22 of 24) protein_coding-intron (ENSMUSG00000040086.13, intron 22 of 24) -7654 ENSMUSG00000118443.1 ENSMUSG00000118443 ENSMUST00000238360 Gm18589 unitary_pseudogene Interval_111481 chr4 22017609 22018574 + 0 NA Intergenic Intergenic -9902 ENSMUSG00000080997.1 ENSMUSG00000080997 ENSMUST00000118473 Gm11885 processed_pseudogene Interval_61071 chr15 79065264 79066977 + 0 NA TTS (ENSMUSG00000115887.1) TEC-TTS (ENSMUSG00000115887.1) 1459 ENSMUSG00000115887.1 ENSMUSG00000115887 ENSMUST00000229249 Gm49471 TEC Interval_137897 chr6 83197129 83197932 + 0 NA exon (ENSMUSG00000031865.16, exon 24 of 28) protein_coding-exon (ENSMUSG00000031865.16, exon 24 of 28) 2987 ENSMUSG00000031865.16 ENSMUSG00000031865 ENSMUST00000153793 Dctn1 protein_coding Interval_11009 chr1 178348333 178348774 + 0 NA Intergenic Intergenic 8952 ENSMUSG00000104279.1 ENSMUSG00000104279 ENSMUST00000194245 Gm38300 TEC Interval_73692 chr17 42835033 42835325 + 0 NA intron (ENSMUSG00000061665.7, intron 2 of 15) protein_coding-intron (ENSMUSG00000061665.7, intron 4 of 17) -4149 ENSMUSG00000061665.7 ENSMUSG00000061665 ENSMUST00000233626 Cd2ap protein_coding Interval_108338 chr3 124440071 124440886 + 0 NA Intergenic Intergenic -14487 ENSMUSG00000027973.11 ENSMUSG00000027973 ENSMUST00000198630 1700006A11Rik protein_coding Interval_35247 chr12 18852430 18855413 + 0 NA promoter-TSS (ENSMUSG00000112970.1) processed_pseudogene-promoter-TSS (ENSMUSG00000112970.1) 50 ENSMUSG00000112970.1 ENSMUSG00000112970 ENSMUST00000220531 Gm49370 processed_pseudogene Interval_73347 chr17 36396378 36396596 + 0 NA TTS (ENSMUSG00000092555.1) processed_pseudogene-TTS (ENSMUSG00000092555.1) 2030 ENSMUSG00000092555.1 ENSMUSG00000092555 ENSMUST00000173340 Stk-ps1 processed_pseudogene Interval_84735 chr19 16022605 16022850 + 0 NA Intergenic Intergenic -2724 ENSMUSG00000117711.1 ENSMUSG00000117711 ENSMUST00000235413 Rpl37-ps1 processed_pseudogene Interval_80571 chr18 44333374 44334084 + 0 NA promoter-TSS (ENSMUSG00000024471.12) protein_coding-promoter-TSS (ENSMUSG00000024471.12) -345 ENSMUSG00000024471.12 ENSMUSG00000024471 ENSMUST00000115498 Myot protein_coding Interval_81781 chr18 64628342 64628768 + 0 NA intron (ENSMUSG00000039529.9, intron 1 of 4) protein_coding-intron (ENSMUSG00000039529.9, intron 1 of 27) -15456 ENSMUSG00000118133.1 ENSMUSG00000118133 ENSMUST00000238142 Gm6978 transcribed_processed_pseudogene Interval_155902 chr8 40914056 40915090 + 0 NA intron (ENSMUSG00000031596.15, intron 9 of 10) protein_coding-intron (ENSMUSG00000031596.15, intron 10 of 11) -11639 ENSMUSG00000031595.9 ENSMUSG00000031595 ENSMUST00000034004 Pdgfrl protein_coding Interval_6651 chr1 118538907 118539651 + 0 NA exon (ENSMUSG00000064302.13, exon 24 of 40) protein_coding-exon (ENSMUSG00000064302.13, exon 24 of 40) 26562 ENSMUSG00000064302.13 ENSMUSG00000064302 ENSMUST00000187575 Clasp1 protein_coding Interval_13461 chr10 18429673 18429998 + 0 NA intron (ENSMUSG00000039835.16, intron 1 of 3) protein_coding-intron (ENSMUSG00000039835.16, intron 1 of 6) -92594 ENSMUSG00000111313.1 ENSMUSG00000111313 ENSMUST00000213578 Gm18942 processed_pseudogene Interval_152058 chr7 128672001 128673184 + 0 NA TTS (ENSMUSG00000042105.18) protein_coding-TTS (ENSMUSG00000042105.18) -15897 ENSMUSG00000042105.18 ENSMUSG00000042105 ENSMUST00000118605 Inpp5f protein_coding Interval_106048 chr3 91713906 91714219 + 0 NA Intergenic Intergenic 296803 ENSMUSG00000077085.1 ENSMUSG00000077085 ENSMUST00000103897 Gm23697 miRNA Interval_45634 chr13 56397431 56398978 + 0 NA Intergenic Intergenic -28390 ENSMUSG00000110477.1 ENSMUSG00000110477 ENSMUST00000212844 Gm3045 protein_coding Interval_50935 chr14 20856285 20856787 + 0 NA promoter-TSS (ENSMUSG00000114728.1) processed_pseudogene-promoter-TSS (ENSMUSG00000114728.1) -115 ENSMUSG00000114728.1 ENSMUSG00000114728 ENSMUST00000225216 Gm6128 processed_pseudogene Interval_39191 chr12 85697849 85698743 + 0 NA intron (ENSMUSG00000034266.6, intron 2 of 2) protein_coding-intron (ENSMUSG00000034266.6, intron 2 of 2) 9004 ENSMUSG00000034266.6 ENSMUSG00000034266 ENSMUST00000222781 Batf protein_coding Interval_31740 chr11 102565150 102565421 + 0 NA Intergenic Intergenic -9086 ENSMUSG00000034621.14 ENSMUSG00000034621 ENSMUST00000125754 Gpatch8 protein_coding Interval_143422 chr7 6658111 6660393 + 0 NA promoter-TSS (ENSMUSG00000108113.2) processed_transcript-promoter-TSS (ENSMUSG00000108113.2) 3116 ENSMUSG00000108113.2 ENSMUSG00000108113 ENSMUST00000203156 Zim2 processed_transcript Interval_112686 chr4 44065489 44065991 + 0 NA intron (ENSMUSG00000028479.18, intron 2 of 3) protein_coding-intron (ENSMUSG00000028479.18, intron 2 of 11) -10443 ENSMUSG00000028479.18 ENSMUSG00000028479 ENSMUST00000140724 Gne protein_coding Interval_121908 chr5 9438346 9438521 + 0 NA intron (ENSMUSG00000056004.16, intron 13 of 21) protein_coding-intron (ENSMUSG00000056004.16, intron 13 of 21) 62729 ENSMUSG00000077896.1 ENSMUSG00000077896 ENSMUST00000104703 Mir879 miRNA Interval_71484 chr17 24082787 24083674 + 0 NA intron (ENSMUSG00000024122.16, intron 11 of 13) protein_coding-intron (ENSMUSG00000024122.16, intron 11 of 13) -3634 ENSMUSG00000117523.1 ENSMUSG00000117523 ENSMUST00000234317 Gm50071 antisense Interval_135452 chr6 39410814 39411164 + 0 NA intron (ENSMUSG00000029922.15, intron 1 of 2) protein_coding-intron (ENSMUSG00000029922.15, intron 1 of 7) -6259 ENSMUSG00000029922.15 ENSMUSG00000029922 ENSMUST00000114822 Mkrn1 protein_coding Interval_137509 chr6 72818611 72819221 + 0 NA Intergenic Intergenic -67002 ENSMUSG00000104501.1 ENSMUSG00000104501 ENSMUST00000193564 Gm37736 TEC Interval_73678 chr17 42716974 42717943 + 0 NA intron (ENSMUSG00000057899.7, intron 2 of 9) protein_coding-intron (ENSMUSG00000057899.7, intron 2 of 5) -9715 ENSMUSG00000117163.1 ENSMUSG00000117163 ENSMUST00000233378 Gm5978 processed_pseudogene Interval_49573 chr13 113073860 113074094 + 0 NA intron (ENSMUSG00000078926.8, intron 6 of 10) protein_coding-intron (ENSMUSG00000078926.8, intron 6 of 11) 5170 ENSMUSG00000116554.1 ENSMUSG00000116554 ENSMUST00000232584 4930563N14Rik antisense Interval_105243 chr3 84169564 84169872 + 0 NA intron (ENSMUSG00000027993.16, intron 9 of 10) protein_coding-intron (ENSMUSG00000027993.16, intron 10 of 11) -4386 ENSMUSG00000104043.1 ENSMUSG00000104043 ENSMUST00000193882 Gm6525 protein_coding Interval_21688 chr11 3707051 3708019 + 0 NA intron (ENSMUSG00000020435.17, intron 10 of 11) protein_coding-intron (ENSMUSG00000020435.17, intron 12 of 13) -9209 ENSMUSG00000083015.1 ENSMUSG00000083015 ENSMUST00000117960 Gm16518 processed_pseudogene Interval_99009 chr2 156641099 156644635 + 0 NA intron (ENSMUSG00000061689.15, intron 1 of 12) protein_coding-intron (ENSMUSG00000061689.15, intron 1 of 12) -9399 ENSMUSG00000083498.1 ENSMUSG00000083498 ENSMUST00000118255 Gm14172 processed_pseudogene Interval_139634 chr6 104028313 104028901 + 0 NA Intergenic Intergenic -63968 ENSMUSG00000108172.1 ENSMUSG00000108172 ENSMUST00000203981 Gm21054 processed_pseudogene Interval_101959 chr3 13259808 13260562 + 0 NA Intergenic Intergenic -28012 ENSMUSG00000102815.1 ENSMUSG00000102815 ENSMUST00000195003 Gm37813 TEC Interval_49271 chr13 110031178 110032299 + 0 NA Intergenic Intergenic 127929 ENSMUSG00000084651.1 ENSMUSG00000084651 ENSMUST00000122702 Mir1904 miRNA Interval_61634 chr15 83067589 83068534 + 0 NA Intergenic Intergenic -32202 ENSMUSG00000058586.12 ENSMUSG00000058586 ENSMUST00000169461 Serhl protein_coding Interval_162867 chr9 10760130 10760912 + 0 NA intron (ENSMUSG00000039488.15, intron 1 of 20) protein_coding-intron (ENSMUSG00000039488.15, intron 1 of 24) 25881 ENSMUSG00000111209.1 ENSMUSG00000111209 ENSMUST00000213753 Gm7529 processed_pseudogene Interval_57153 chr15 7040949 7041344 + 0 NA Intergenic Intergenic 45109 ENSMUSG00000104334.1 ENSMUSG00000104334 ENSMUST00000192751 Gm38282 TEC Interval_135453 chr6 39413987 39414825 + 0 NA intron (ENSMUSG00000029922.15, intron 1 of 2) protein_coding-intron (ENSMUSG00000029922.15, intron 1 of 7) -5481 ENSMUSG00000068601.2 ENSMUSG00000068601 ENSMUST00000090237 Gm10244 antisense Interval_88823 chr2 11466812 11467347 + 0 NA Intergenic Intergenic 46855 ENSMUSG00000082314.2 ENSMUSG00000082314 ENSMUST00000117854 Gm13296 processed_pseudogene Interval_107120 chr3 103714443 103715258 + 0 NA Intergenic Intergenic 17703 ENSMUSG00000027848.12 ENSMUSG00000027848 ENSMUST00000154145 Olfml3 protein_coding Interval_59485 chr15 54069567 54070676 + 0 NA Intergenic Intergenic -34139 ENSMUSG00000097938.1 ENSMUSG00000097938 ENSMUST00000182320 Gm26933 processed_pseudogene Interval_36906 chr12 55268580 55269698 + 0 NA Intergenic Intergenic -6242 ENSMUSG00000112368.1 ENSMUSG00000112368 ENSMUST00000217756 Gm49376 unprocessed_pseudogene Interval_29793 chr11 86834192 86837220 + 0 NA Intergenic Intergenic -34618 ENSMUSG00000018425.18 ENSMUSG00000018425 ENSMUST00000131798 Dhx40 protein_coding Interval_5367 chr1 87936450 87937033 + 0 NA intron (ENSMUSG00000070738.10, intron 3 of 8) protein_coding-intron (ENSMUSG00000070738.10, intron 23 of 29) 18843 ENSMUSG00000070738.10 ENSMUSG00000070738 ENSMUST00000189448 Dgkd protein_coding Interval_123094 chr5 29653388 29654797 + 0 NA intron (ENSMUSG00000039000.8, intron 18 of 22) protein_coding-intron (ENSMUSG00000039000.8, intron 18 of 22) 23179 ENSMUSG00000039000.8 ENSMUSG00000039000 ENSMUST00000199598 Ube3c protein_coding Interval_85429 chr19 25869932 25870676 + 0 NA Intergenic Intergenic -73497 ENSMUSG00000098105.1 ENSMUSG00000098105 ENSMUST00000182565 Gm8825 processed_pseudogene Interval_11021 chr1 178480251 178480475 + 0 NA intron (ENSMUSG00000026495.8, intron 5 of 5) protein_coding-intron (ENSMUSG00000026495.8, intron 6 of 6) -48762 ENSMUSG00000026494.12 ENSMUSG00000026494 ENSMUST00000160789 Kif26b protein_coding Interval_147944 chr7 75780257 75780546 + 0 NA intron (ENSMUSG00000097415.2, intron 2 of 2) lincRNA-intron (ENSMUSG00000097415.2, intron 2 of 2) -3631 ENSMUSG00000097116.1 ENSMUSG00000097116 ENSMUST00000180744 Gm26729 processed_pseudogene Interval_64449 chr16 11462791 11462995 + 0 NA intron (ENSMUSG00000071669.14, intron 13 of 20) protein_coding-intron (ENSMUSG00000071669.14, intron 6 of 13) 33413 ENSMUSG00000082653.1 ENSMUSG00000082653 ENSMUST00000117770 Gm15897 processed_pseudogene Interval_168466 chr9 81460007 81460271 + 0 NA intron (ENSMUSG00000098429.1, intron 2 of 2) lincRNA-intron (ENSMUSG00000098429.1, intron 2 of 2) 4742 ENSMUSG00000098429.1 ENSMUSG00000098429 ENSMUST00000184676 Gm27226 lincRNA Interval_95209 chr2 104810283 104810945 + 0 NA intron (ENSMUSG00000074994.6, intron 1 of 12) protein_coding-intron (ENSMUSG00000074994.6, intron 1 of 11) 6146 ENSMUSG00000074994.6 ENSMUSG00000074994 ENSMUST00000238887 Qser1 protein_coding Interval_23338 chr11 21532377 21532582 + 0 NA Intergenic Intergenic -24761 ENSMUSG00000078962.4 ENSMUSG00000078962 ENSMUST00000165732 4932414J04Rik lincRNA Interval_115113 chr4 90559630 90560521 + 0 NA Intergenic Intergenic -15705 ENSMUSG00000082502.1 ENSMUSG00000082502 ENSMUST00000117395 Gm12636 processed_pseudogene Interval_86852 chr19 44363048 44363988 + 0 NA Intergenic Intergenic 30426 ENSMUSG00000050195.8 ENSMUSG00000050195 ENSMUST00000058856 Scd4 protein_coding Interval_56513 chr14 119687492 119688480 + 0 NA intron (ENSMUSG00000053465.6, intron 1 of 1) protein_coding-intron (ENSMUSG00000053465.6, intron 1 of 1) 43974 ENSMUSG00000115196.1 ENSMUSG00000115196 ENSMUST00000226465 Gm6212 processed_pseudogene Interval_59272 chr15 50643600 50644167 + 0 NA Intergenic Intergenic 245231 ENSMUSG00000084458.1 ENSMUSG00000084458 ENSMUST00000122509 Mir1907 miRNA Interval_159306 chr8 93138697 93139250 + 0 NA Intergenic Intergenic -7690 ENSMUSG00000057400.14 ENSMUSG00000057400 ENSMUST00000211843 Ces1c protein_coding Interval_76634 chr17 83018819 83019176 + 0 NA Intergenic Intergenic -49908 ENSMUSG00000100154.1 ENSMUSG00000100154 ENSMUST00000187700 Gm29052 lincRNA Interval_89782 chr2 25408506 25409357 + 0 NA promoter-TSS (ENSMUSG00000015094.16) protein_coding-promoter-TSS (ENSMUSG00000015094.16) 5483 ENSMUSG00000015094.16 ENSMUSG00000015094 ENSMUST00000138651 Npdc1 protein_coding Interval_106763 chr3 100535921 100536270 + 0 NA Intergenic Intergenic 38666 ENSMUSG00000104943.1 ENSMUSG00000104943 ENSMUST00000199168 Gm42868 sense_intronic Interval_37143 chr12 58925288 58926154 + 0 NA Intergenic Intergenic -1262 ENSMUSG00000112649.1 ENSMUSG00000112649 ENSMUST00000218395 Gm47647 transcribed_processed_pseudogene Interval_126364 chr5 87205818 87206150 + 0 NA Intergenic Intergenic 12127 ENSMUSG00000105240.1 ENSMUSG00000105240 ENSMUST00000197436 Gm19418 unprocessed_pseudogene Interval_146089 chr7 43807249 43808102 + 0 NA Intergenic Intergenic -3619 ENSMUSG00000030713.6 ENSMUSG00000030713 ENSMUST00000032955 Klk7 protein_coding Interval_64817 chr16 16129807 16130747 + 0 NA intron (ENSMUSG00000041974.10, intron 3 of 16) protein_coding-intron (ENSMUSG00000041974.10, intron 3 of 19) 16527 ENSMUSG00000041974.10 ENSMUSG00000041974 ENSMUST00000229846 Spidr protein_coding Interval_35124 chr12 17441779 17442129 + 0 NA intron (ENSMUSG00000113246.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000113246.1, intron 1 of 2) 5336 ENSMUSG00000113246.1 ENSMUSG00000113246 ENSMUST00000220527 Gm36752 lincRNA Interval_21956 chr11 5415521 5415836 + 0 NA intron (ENSMUSG00000041961.14, intron 1 of 3) protein_coding-intron (ENSMUSG00000041961.14, intron 1 of 8) -33938 ENSMUSG00000041961.14 ENSMUSG00000041961 ENSMUST00000143746 Znrf3 protein_coding Interval_87942 chr19 57263521 57265055 + 0 NA intron (ENSMUSG00000025085.16, intron 1 of 20) protein_coding-intron (ENSMUSG00000025085.16, intron 1 of 6) -9672 ENSMUSG00000117684.1 ENSMUSG00000117684 ENSMUST00000237596 4930449E18Rik antisense Interval_54258 chr14 66950171 66951535 + 0 NA Intergenic Intergenic 13488 ENSMUSG00000104220.1 ENSMUSG00000104220 ENSMUST00000193416 4930578I07Rik TEC Interval_134668 chr6 30234081 30234269 + 0 NA intron (ENSMUSG00000039159.16, intron 3 of 4) protein_coding-intron (ENSMUSG00000039159.16, intron 3 of 4) 61282 ENSMUSG00000103108.2 ENSMUSG00000103108 ENSMUST00000194541 Rncr4 lincRNA Interval_27753 chr11 69787365 69787693 + 0 NA intron (ENSMUSG00000041189.9, intron 7 of 10) protein_coding-intron (ENSMUSG00000041189.9, intron 7 of 10) 6741 ENSMUSG00000041189.9 ENSMUSG00000041189 ENSMUST00000147791 Chrnb1 protein_coding Interval_167708 chr9 72205239 72205616 + 0 NA Intergenic Intergenic -4128 ENSMUSG00000098412.1 ENSMUSG00000098412 ENSMUST00000184467 Gm7870 processed_pseudogene Interval_124177 chr5 39005175 39005366 + 0 NA Intergenic Intergenic -2239 ENSMUSG00000106924.1 ENSMUSG00000106924 ENSMUST00000200823 Gm42857 processed_pseudogene Interval_173677 chrX 101819254 101819463 + 0 NA intron (ENSMUSG00000118638.1, intron 2 of 4) protein_coding-intron (ENSMUSG00000118638.1, intron 2 of 4) 2619 ENSMUSG00000118638.1 ENSMUSG00000118638 ENSMUST00000239206 AL805980.1 protein_coding Interval_96051 chr2 119463116 119464675 + 0 NA intron (ENSMUSG00000034154.15, intron 1 of 27) protein_coding-intron (ENSMUSG00000034154.15, intron 1 of 35) -24215 ENSMUSG00000034154.15 ENSMUSG00000034154 ENSMUST00000138707 Ino80 protein_coding Interval_50438 chr14 13220954 13221609 + 0 NA intron (ENSMUSG00000051729.12, intron 2 of 3) processed_transcript-intron (ENSMUSG00000051729.12, intron 2 of 3) -50563 ENSMUSG00000051729.12 ENSMUSG00000051729 ENSMUST00000140967 Gm5087 processed_transcript Interval_157535 chr8 71264476 71264781 + 0 NA intron (ENSMUSG00000035439.13, intron 1 of 4) protein_coding-intron (ENSMUSG00000035439.13, intron 2 of 10) 7832 ENSMUSG00000035439.13 ENSMUSG00000035439 ENSMUST00000128833 Haus8 protein_coding Interval_75541 chr17 67906206 67906771 + 0 NA intron (ENSMUSG00000024043.13, intron 1 of 17) protein_coding-intron (ENSMUSG00000024043.13, intron 1 of 17) -33440 ENSMUSG00000024043.13 ENSMUSG00000024043 ENSMUST00000170581 Arhgap28 protein_coding Interval_21206 chr10 127213292 127214685 + 0 NA Intergenic Intergenic -2403 ENSMUSG00000025417.8 ENSMUSG00000025417 ENSMUST00000218386 Pip4k2c protein_coding Interval_157112 chr8 65335754 65335984 + 0 NA Intergenic Intergenic -31432 ENSMUSG00000064905.1 ENSMUSG00000064905 ENSMUST00000082971 Gm25403 misc_RNA Interval_62570 chr15 94719762 94720030 + 0 NA intron (ENSMUSG00000063296.5, intron 3 of 7) protein_coding-intron (ENSMUSG00000063296.5, intron 3 of 7) -38510 ENSMUSG00000095169.1 ENSMUSG00000095169 ENSMUST00000103977 Gm25546 snoRNA Interval_42362 chr13 12369121 12370294 + 0 NA Intergenic Intergenic -8451 ENSMUSG00000094185.2 ENSMUSG00000094185 ENSMUST00000180224 Gm5445 processed_pseudogene Interval_37406 chr12 67414181 67414613 + 0 NA Intergenic Intergenic 13847 ENSMUSG00000113777.1 ENSMUSG00000113777 ENSMUST00000220799 Gm48060 processed_pseudogene Interval_167181 chr9 65976253 65976629 + 0 NA TTS (ENSMUSG00000032384.16) protein_coding-TTS (ENSMUSG00000032384.16) 18025 ENSMUSG00000032384.16 ENSMUSG00000032384 ENSMUST00000205489 Csnk1g1 protein_coding Interval_97115 chr2 131394133 131394504 + 0 NA Intergenic Intergenic 19644 ENSMUSG00000089113.1 ENSMUSG00000089113 ENSMUST00000158488 Gm22902 ribozyme Interval_114156 chr4 65279279 65281045 + 0 NA intron (ENSMUSG00000028370.7, intron 10 of 21) protein_coding-intron (ENSMUSG00000028370.7, intron 10 of 21) 155988 ENSMUSG00000028370.7 ENSMUSG00000028370 ENSMUST00000084501 Pappa protein_coding Interval_125922 chr5 75831902 75832742 + 0 NA TTS (ENSMUSG00000107061.1) lincRNA-TTS (ENSMUSG00000107061.1) 3323 ENSMUSG00000107061.1 ENSMUSG00000107061 ENSMUST00000201551 Gm19590 lincRNA Interval_165349 chr9 46482730 46483392 + 0 NA Intergenic Intergenic 22012 ENSMUSG00000111115.1 ENSMUSG00000111115 ENSMUST00000214085 Gm47144 lincRNA Interval_167212 chr9 66227974 66229381 + 0 NA intron (ENSMUSG00000032380.9, intron 3 of 9) protein_coding-intron (ENSMUSG00000032380.9, intron 3 of 11) 70451 ENSMUSG00000032380.9 ENSMUSG00000032380 ENSMUST00000129778 Dapk2 protein_coding Interval_35927 chr12 32066726 32067257 + 0 NA Intergenic Intergenic -6402 ENSMUSG00000002997.15 ENSMUSG00000002997 ENSMUST00000146865 Prkar2b protein_coding Interval_137505 chr6 72794492 72795766 + 0 NA Intergenic Intergenic -43215 ENSMUSG00000104501.1 ENSMUSG00000104501 ENSMUST00000193564 Gm37736 TEC Interval_44299 chr13 43475279 43475501 + 0 NA intron (ENSMUSG00000038546.9, intron 1 of 5) protein_coding-intron (ENSMUSG00000038546.9, intron 1 of 13) 3517 ENSMUSG00000038546.9 ENSMUSG00000038546 ENSMUST00000222023 Ranbp9 protein_coding Interval_69035 chr16 90235248 90236025 + 0 NA intron (ENSMUSG00000022983.16, intron 19 of 19) protein_coding-intron (ENSMUSG00000022983.16, intron 19 of 19) 14882 ENSMUSG00000022982.10 ENSMUSG00000022982 ENSMUST00000232505 Sod1 protein_coding Interval_50197 chr14 9391362 9391798 + 0 NA Intergenic Intergenic -9044 ENSMUSG00000114615.1 ENSMUSG00000114615 ENSMUST00000224264 Gm48370 lincRNA Interval_94951 chr2 102127216 102128771 + 0 NA intron (ENSMUSG00000048058.17, intron 1 of 5) protein_coding-intron (ENSMUSG00000048058.17, intron 1 of 5) 10126 ENSMUSG00000048058.17 ENSMUSG00000048058 ENSMUST00000127888 Ldlrad3 protein_coding Interval_61359 chr15 81044600 81045569 + 0 NA TTS (ENSMUSG00000042292.18) protein_coding-TTS (ENSMUSG00000042292.18) 5441 ENSMUSG00000064587.1 ENSMUSG00000064587 ENSMUST00000082653 Gm25131 snRNA Interval_1433 chr1 23286829 23287802 + 0 NA Intergenic Intergenic -4222 ENSMUSG00000097970.1 ENSMUSG00000097970 ENSMUST00000182303 Gm27028 lincRNA Interval_86367 chr19 39027381 39027766 + 0 NA intron (ENSMUSG00000025002.5, intron 4 of 8) protein_coding-intron (ENSMUSG00000025002.5, intron 4 of 8) -20484 ENSMUSG00000093303.1 ENSMUSG00000093303 ENSMUST00000175562 Gm23800 miRNA Interval_93582 chr2 74657584 74659239 + 0 NA intron (ENSMUSG00000001815.15, intron 1 of 2) protein_coding-intron (ENSMUSG00000001815.15, intron 1 of 2) 1008 ENSMUSG00000001815.15 ENSMUSG00000001815 ENSMUST00000173623 Evx2 protein_coding Interval_83950 chr19 5770804 5771741 + 0 NA promoter-TSS (ENSMUSG00000024941.9) protein_coding-promoter-TSS (ENSMUSG00000024941.9) 80 ENSMUSG00000024941.9 ENSMUSG00000024941 ENSMUST00000237133 Scyl1 protein_coding Interval_105800 chr3 89393559 89395189 + 0 NA promoter-TSS (ENSMUSG00000028042.15) protein_coding-promoter-TSS (ENSMUSG00000028042.15) -996 ENSMUSG00000028042.15 ENSMUSG00000028042 ENSMUST00000139094 Zbtb7b protein_coding Interval_26019 chr11 53510627 53510854 + 0 NA Intergenic Intergenic -9187 ENSMUSG00000018398.18 ENSMUSG00000018398 ENSMUST00000145927 Septin8 protein_coding Interval_53735 chr14 61309373 61310522 + 0 NA exon (ENSMUSG00000043157.8, exon 1 of 1) protein_coding-exon (ENSMUSG00000043157.8, exon 1 of 1) 113 ENSMUSG00000043157.8 ENSMUSG00000043157 ENSMUST00000224727 Arl11 protein_coding Interval_122989 chr5 28198761 28199814 + 0 NA Intergenic Intergenic -30447 ENSMUSG00000106160.1 ENSMUSG00000106160 ENSMUST00000199117 Gm43610 TEC Interval_67978 chr16 62503286 62504552 + 0 NA Intergenic Intergenic -19970 ENSMUSG00000118558.1 ENSMUSG00000118558 ENSMUST00000239089 CT010569.1 processed_pseudogene Interval_94356 chr2 90462770 90464104 + 0 NA intron (ENSMUSG00000025314.16, intron 6 of 23) protein_coding-intron (ENSMUSG00000025314.16, intron 4 of 21) -15813 ENSMUSG00000085471.1 ENSMUSG00000085471 ENSMUST00000126953 4933423P22Rik antisense Interval_83611 chr18 90552871 90554273 + 0 NA Intergenic Intergenic 22636 ENSMUSG00000117747.1 ENSMUSG00000117747 ENSMUST00000236589 Gm50438 transcribed_processed_pseudogene Interval_50400 chr14 12502102 12502341 + 0 NA intron (ENSMUSG00000054423.14, intron 13 of 28) protein_coding-intron (ENSMUSG00000054423.14, intron 13 of 28) -74580 ENSMUSG00000084541.1 ENSMUSG00000084541 ENSMUST00000122592 n-R5s45 rRNA Interval_161606 chr8 121541778 121542968 + 0 NA promoter-TSS (ENSMUSG00000031809.10) protein_coding-promoter-TSS (ENSMUSG00000031809.10) 293 ENSMUSG00000098211.2 ENSMUSG00000098211 ENSMUST00000182145 Gm27045 bidirectional_promoter_lncRNA Interval_45471 chr13 55314810 55315010 + 0 NA exon (ENSMUSG00000021488.8, exon 23 of 23) protein_coding-exon (ENSMUSG00000021488.8, exon 23 of 23) 7036 ENSMUSG00000034789.8 ENSMUSG00000034789 ENSMUST00000223672 Rab24 protein_coding Interval_112599 chr4 43485624 43486078 + 0 NA Intergenic Intergenic -2629 ENSMUSG00000028460.6 ENSMUSG00000028460 ENSMUST00000123526 Sit1 protein_coding Interval_96606 chr2 126429103 126429717 + 0 NA intron (ENSMUSG00000060131.11, intron 7 of 18) protein_coding-intron (ENSMUSG00000060131.11, intron 7 of 27) 70579 ENSMUSG00000060131.11 ENSMUSG00000060131 ENSMUST00000129187 Atp8b4 protein_coding Interval_169082 chr9 91878443 91879031 + 0 NA Intergenic Intergenic 38967 ENSMUSG00000087871.1 ENSMUSG00000087871 ENSMUST00000157246 Gm26101 snRNA Interval_131848 chr5 140344336 140344714 + 0 NA intron (ENSMUSG00000029560.12, intron 8 of 9) protein_coding-intron (ENSMUSG00000029560.12, intron 9 of 10) -12627 ENSMUSG00000029557.7 ENSMUSG00000029557 ENSMUST00000031536 Mrm2 protein_coding Interval_55532 chr14 91039971 91040666 + 0 NA Intergenic Intergenic 67974 ENSMUSG00000088746.1 ENSMUSG00000088746 ENSMUST00000158121 Gm23225 snoRNA Interval_54052 chr14 64799786 64799999 + 0 NA intron (ENSMUSG00000060012.9, intron 2 of 2) protein_coding-intron (ENSMUSG00000060012.9, intron 37 of 39) -39208 ENSMUSG00000098837.1 ENSMUSG00000098837 ENSMUST00000184830 Gm20111 processed_pseudogene Interval_42156 chr13 9239323 9240099 + 0 NA Intergenic Intergenic 16174 ENSMUSG00000113936.1 ENSMUSG00000113936 ENSMUST00000222096 Gm8784 processed_pseudogene Interval_161640 chr8 121738915 121739363 + 0 NA intron (ENSMUSG00000025318.13, intron 1 of 5) protein_coding-intron (ENSMUSG00000025318.13, intron 1 of 4) -14337 ENSMUSG00000025318.13 ENSMUSG00000025318 ENSMUST00000172209 Jph3 protein_coding Interval_19857 chr10 110540846 110541123 + 0 NA Intergenic Intergenic -55282 ENSMUSG00000112398.1 ENSMUSG00000112398 ENSMUST00000219459 9230102K24Rik lincRNA Interval_124281 chr5 43517196 43517486 + 0 NA intron (ENSMUSG00000061535.11, intron 1 of 2) protein_coding-intron (ENSMUSG00000061535.11, intron 1 of 2) 1579 ENSMUSG00000061535.11 ENSMUSG00000061535 ENSMUST00000121872 C1qtnf7 protein_coding Interval_16054 chr10 60362372 60362875 + 0 NA intron (ENSMUSG00000020101.14, intron 3 of 6) protein_coding-intron (ENSMUSG00000020101.14, intron 3 of 6) 15611 ENSMUSG00000020101.14 ENSMUSG00000020101 ENSMUST00000105459 Vsir protein_coding Interval_12884 chr10 7210878 7212607 + 0 NA exon (ENSMUSG00000015202.13, exon 1 of 13) protein_coding-exon (ENSMUSG00000015202.13, exon 1 of 13) -76236 ENSMUSG00000015202.13 ENSMUSG00000015202 ENSMUST00000015346 Cnksr3 protein_coding Interval_150195 chr7 107852827 107855107 + 0 NA Intergenic Intergenic -6477 ENSMUSG00000109542.2 ENSMUSG00000109542 ENSMUST00000073059 Olfr470 protein_coding Interval_132220 chr5 143411993 143412425 + 0 NA intron (ENSMUSG00000079111.3, intron 1 of 4) protein_coding-intron (ENSMUSG00000079111.3, intron 1 of 4) 8371 ENSMUSG00000079111.3 ENSMUSG00000079111 ENSMUST00000110731 Kdelr2 protein_coding Interval_2958 chr1 51636015 51637296 + 0 NA Intergenic Intergenic 61245 ENSMUSG00000101741.1 ENSMUSG00000101741 ENSMUST00000186769 Gm28055 lincRNA Interval_146254 chr7 44985578 44987390 + 0 NA promoter-TSS (ENSMUSG00000109324.2) protein_coding-promoter-TSS (ENSMUSG00000109324.2) -165 ENSMUSG00000109324.2 ENSMUSG00000109324 ENSMUST00000207702 Prmt1 protein_coding Interval_68583 chr16 79279244 79280047 + 0 NA Intergenic Intergenic -188548 ENSMUSG00000022857.13 ENSMUSG00000022857 ENSMUST00000060402 Tmprss15 protein_coding Interval_137087 chr6 67266154 67268160 + 0 NA promoter-TSS (ENSMUSG00000036371.6) protein_coding-promoter-TSS (ENSMUSG00000036371.6) 152 ENSMUSG00000036371.6 ENSMUSG00000036371 ENSMUST00000204206 Serbp1 protein_coding Interval_59002 chr15 41605618 41606985 + 0 NA intron (ENSMUSG00000022307.16, intron 2 of 15) protein_coding-intron (ENSMUSG00000022307.16, intron 2 of 15) 182610 ENSMUSG00000097232.1 ENSMUSG00000097232 ENSMUST00000180418 Gm26854 antisense Interval_167607 chr9 71069100 71069385 + 0 NA Intergenic Intergenic -57600 ENSMUSG00000111618.1 ENSMUSG00000111618 ENSMUST00000213527 Gm47268 processed_pseudogene Interval_18430 chr10 85894570 85895581 + 0 NA intron (ENSMUSG00000035529.10, intron 11 of 11) protein_coding-intron (ENSMUSG00000035529.10, intron 11 of 11) 21911 ENSMUSG00000035529.10 ENSMUSG00000035529 ENSMUST00000218969 Prdm4 protein_coding Interval_49135 chr13 108353753 108354248 + 0 NA intron (ENSMUSG00000021697.12, intron 1 of 4) protein_coding-intron (ENSMUSG00000021697.12, intron 2 of 10) -3426 ENSMUSG00000021697.12 ENSMUSG00000021697 ENSMUST00000172402 Depdc1b protein_coding Interval_106942 chr3 102083545 102085354 + 0 NA Intergenic Intergenic -2097 ENSMUSG00000027861.13 ENSMUSG00000027861 ENSMUST00000159833 Casq2 protein_coding Interval_32342 chr11 107069734 107070531 + 0 NA intron (ENSMUSG00000040481.17, intron 13 of 29) protein_coding-intron (ENSMUSG00000040481.17, intron 11 of 27) -22789 ENSMUSG00000040481.17 ENSMUSG00000040481 ENSMUST00000149486 Bptf protein_coding Interval_64697 chr16 14267337 14267583 + 0 NA intron (ENSMUSG00000018830.10, intron 3 of 41) protein_coding-intron (ENSMUSG00000018830.10, intron 3 of 40) 23905 ENSMUSG00000018830.10 ENSMUSG00000018830 ENSMUST00000230643 Myh11 protein_coding Interval_142105 chr6 137163183 137163928 + 0 NA intron (ENSMUSG00000030222.13, intron 2 of 2) protein_coding-intron (ENSMUSG00000030222.13, intron 2 of 4) -16626 ENSMUSG00000107567.1 ENSMUSG00000107567 ENSMUST00000203679 4930480K02Rik TEC Interval_59618 chr15 56420613 56421393 + 0 NA Intergenic Intergenic 5990 ENSMUSG00000115064.1 ENSMUSG00000115064 ENSMUST00000228801 Gm49213 processed_pseudogene Interval_110263 chr3 155105753 155106209 + 0 NA intron (ENSMUSG00000028182.14, intron 3 of 5) protein_coding-intron (ENSMUSG00000028182.14, intron 3 of 7) 11116 ENSMUSG00000104122.1 ENSMUSG00000104122 ENSMUST00000194899 Gm37482 TEC Interval_156191 chr8 45825707 45825902 + 0 NA exon (ENSMUSG00000031626.18, exon 26 of 26) protein_coding-exon (ENSMUSG00000031626.18, exon 26 of 26) -6507 ENSMUSG00000085440.1 ENSMUSG00000085440 ENSMUST00000135116 Sorbs2os antisense Interval_119931 chr4 140995739 140995984 + 0 NA promoter-TSS (ENSMUSG00000036622.15) protein_coding-promoter-TSS (ENSMUSG00000036622.15) -4850 ENSMUSG00000036622.15 ENSMUSG00000036622 ENSMUST00000137630 Atp13a2 protein_coding Interval_94022 chr2 80772286 80772619 + 0 NA Intergenic Intergenic -64689 ENSMUSG00000064193.8 ENSMUSG00000064193 ENSMUST00000138679 Gm4735 processed_pseudogene Interval_104648 chr3 69103032 69103343 + 0 NA intron (ENSMUSG00000027782.10, intron 1 of 16) protein_coding-intron (ENSMUSG00000027782.10, intron 1 of 16) -17740 ENSMUSG00000089417.1 ENSMUSG00000089417 ENSMUST00000158792 Gm22009 scaRNA Interval_12957 chr10 8729876 8730239 + 0 NA exon (ENSMUSG00000015305.6, exon 18 of 20) protein_coding-exon (ENSMUSG00000015305.6, exon 18 of 20) 16816 ENSMUSG00000111215.1 ENSMUSG00000111215 ENSMUST00000213934 Gm48654 lincRNA Interval_90658 chr2 31736284 31736932 + 0 NA intron (ENSMUSG00000026842.16, intron 2 of 11) protein_coding-intron (ENSMUSG00000026842.16, intron 1 of 10) 47490 ENSMUSG00000118600.1 ENSMUSG00000118600 ENSMUST00000239231 AL929275.1 protein_coding Interval_129769 chr5 122220383 122220995 + 0 NA intron (ENSMUSG00000064267.13, intron 3 of 3) protein_coding-intron (ENSMUSG00000064267.13, intron 3 of 7) 10576 ENSMUSG00000064267.13 ENSMUSG00000064267 ENSMUST00000100747 Hvcn1 protein_coding Interval_105248 chr3 84193102 84194556 + 0 NA intron (ENSMUSG00000027993.16, intron 3 of 3) protein_coding-intron (ENSMUSG00000027993.16, intron 3 of 11) 19725 ENSMUSG00000104043.1 ENSMUSG00000104043 ENSMUST00000193882 Gm6525 protein_coding Interval_135968 chr6 49142379 49143032 + 0 NA intron (ENSMUSG00000029814.10, intron 3 of 9) protein_coding-intron (ENSMUSG00000029814.10, intron 3 of 14) -30054 ENSMUSG00000107727.1 ENSMUSG00000107727 ENSMUST00000203553 Gm18010 processed_pseudogene Interval_104181 chr3 59879854 59881007 + 0 NA Intergenic Intergenic 19379 ENSMUSG00000095522.2 ENSMUSG00000095522 ENSMUST00000179799 Aadacl2fm3 protein_coding Interval_171818 chr9 121431903 121432969 + 0 NA TTS (ENSMUSG00000032536.12) protein_coding-TTS (ENSMUSG00000032536.12) 62074 ENSMUSG00000032532.7 ENSMUSG00000032532 ENSMUST00000217581 Cck protein_coding Interval_148971 chr7 90534134 90534396 + 0 NA intron (ENSMUSG00000052572.19, intron 3 of 27) protein_coding-intron (ENSMUSG00000052572.19, intron 3 of 27) -58270 ENSMUSG00000030614.8 ENSMUSG00000030614 ENSMUST00000123622 Tmem126b protein_coding Interval_5524 chr1 89540981 89541570 + 0 NA intron (ENSMUSG00000055013.16, intron 1 of 16) protein_coding-intron (ENSMUSG00000055013.16, intron 1 of 17) -22085 ENSMUSG00000088371.1 ENSMUSG00000088371 ENSMUST00000157746 Gm25180 rRNA Interval_44876 chr13 49296796 49297319 + 0 NA intron (ENSMUSG00000037946.11, intron 2 of 17) protein_coding-intron (ENSMUSG00000037946.11, intron 2 of 17) 12183 ENSMUSG00000037946.11 ENSMUSG00000037946 ENSMUST00000110086 Fgd3 protein_coding Interval_72892 chr17 32991933 32993861 + 0 NA promoter-TSS (ENSMUSG00000053390.16) protein_coding-promoter-TSS (ENSMUSG00000053390.16) -304 ENSMUSG00000053390.16 ENSMUSG00000053390 ENSMUST00000157017 Zfp952 protein_coding Interval_38948 chr12 84038325 84039181 + 0 NA promoter-TSS (ENSMUSG00000052392.5) protein_coding-promoter-TSS (ENSMUSG00000052392.5) -182 ENSMUSG00000113475.1 ENSMUSG00000113475 ENSMUST00000221229 Gm49366 protein_coding Interval_95856 chr2 117304124 117304415 + 0 NA intron (ENSMUSG00000027347.18, intron 3 of 14) protein_coding-intron (ENSMUSG00000027347.18, intron 3 of 16) 38608 ENSMUSG00000027347.18 ENSMUSG00000027347 ENSMUST00000110898 Rasgrp1 protein_coding Interval_18927 chr10 93190217 93191758 + 0 NA intron (ENSMUSG00000020015.10, intron 1 of 2) protein_coding-intron (ENSMUSG00000020015.10, intron 1 of 16) 28202 ENSMUSG00000089214.1 ENSMUSG00000089214 ENSMUST00000158589 Mir1931 miRNA Interval_24771 chr11 37186061 37186782 + 0 NA intron (ENSMUSG00000049336.16, intron 1 of 3) protein_coding-intron (ENSMUSG00000049336.16, intron 1 of 30) -242255 ENSMUSG00000049336.16 ENSMUSG00000049336 ENSMUST00000157030 Tenm2 protein_coding Interval_86864 chr19 44461444 44461782 + 0 NA Intergenic Intergenic 8596 ENSMUSG00000117796.1 ENSMUSG00000117796 ENSMUST00000237075 Gm35406 lincRNA Interval_145006 chr7 29387362 29388397 + 0 NA intron (ENSMUSG00000030583.16, intron 6 of 22) protein_coding-intron (ENSMUSG00000030583.16, intron 6 of 22) -10274 ENSMUSG00000030583.16 ENSMUSG00000030583 ENSMUST00000183085 Sipa1l3 protein_coding Interval_49441 chr13 112009206 112009575 + 0 NA intron (ENSMUSG00000086092.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000086092.1, intron 1 of 2) 3888 ENSMUSG00000086092.1 ENSMUSG00000086092 ENSMUST00000156109 Gm15323 lincRNA Interval_44952 chr13 50764719 50765601 + 0 NA promoter-TSS (ENSMUSG00000113652.1) lincRNA-promoter-TSS (ENSMUSG00000113652.1) 88 ENSMUSG00000113652.1 ENSMUSG00000113652 ENSMUST00000221281 4930518P08Rik lincRNA Interval_131257 chr5 136032476 136032661 + 0 NA exon (ENSMUSG00000004947.15, exon 11 of 11) protein_coding-exon (ENSMUSG00000004947.15, exon 11 of 11) -5928 ENSMUSG00000042985.7 ENSMUSG00000042985 ENSMUST00000062606 Upk3b protein_coding Interval_128862 chr5 115682040 115682448 + 0 NA intron (ENSMUSG00000041609.16, intron 2 of 4) protein_coding-intron (ENSMUSG00000041609.16, intron 2 of 8) -32450 ENSMUSG00000041609.16 ENSMUSG00000041609 ENSMUST00000148840 Bicdl1 protein_coding Interval_122368 chr5 21732179 21733230 + 0 NA Intergenic Intergenic 15809 ENSMUSG00000083006.1 ENSMUSG00000083006 ENSMUST00000118032 Gm15715 processed_pseudogene Interval_78696 chr18 17829343 17829664 + 0 NA TTS (ENSMUSG00000117439.1) processed_pseudogene-TTS (ENSMUSG00000117439.1) 684 ENSMUSG00000117439.1 ENSMUSG00000117439 ENSMUST00000234539 Gm50083 processed_pseudogene Interval_57254 chr15 8161550 8162619 + 0 NA TTS (ENSMUSG00000022142.8) protein_coding-TTS (ENSMUSG00000022142.8) 11001 ENSMUSG00000022142.8 ENSMUSG00000022142 ENSMUST00000230647 Nup155 protein_coding Interval_32241 chr11 106397756 106398288 + 0 NA exon (ENSMUSG00000020715.9, exon 22 of 22) protein_coding-exon (ENSMUSG00000020715.9, exon 22 of 22) -17221 ENSMUSG00000001029.15 ENSMUSG00000001029 ENSMUST00000106809 Icam2 protein_coding Interval_11902 chr1 186926493 186926833 + 0 NA promoter-TSS (ENSMUSG00000103503.1) lincRNA-promoter-TSS (ENSMUSG00000103503.1) -299 ENSMUSG00000103503.1 ENSMUSG00000103503 ENSMUST00000194671 1700023G09Rik lincRNA Interval_130859 chr5 132691861 132692846 + 0 NA Intergenic Intergenic -103800 ENSMUSG00000103500.1 ENSMUSG00000103500 ENSMUST00000192042 Gm38373 TEC Interval_157955 chr8 77255590 77255865 + 0 NA intron (ENSMUSG00000037148.8, intron 21 of 21) protein_coding-intron (ENSMUSG00000037148.8, intron 22 of 22) -27134 ENSMUSG00000110258.1 ENSMUSG00000110258 ENSMUST00000210161 Gm45406 antisense Interval_173072 chrX 70408557 70408884 + 0 NA Intergenic Intergenic -4666 ENSMUSG00000082538.1 ENSMUSG00000082538 ENSMUST00000120300 Gm14704 processed_pseudogene Interval_22231 chr11 7404808 7405022 + 0 NA Intergenic Intergenic -114541 ENSMUSG00000087637.1 ENSMUSG00000087637 ENSMUST00000149481 Gm11986 lincRNA Interval_78717 chr18 18823730 18824109 + 0 NA Intergenic Intergenic -309298 ENSMUSG00000117378.1 ENSMUSG00000117378 ENSMUST00000234128 Gm31086 lincRNA Interval_67194 chr16 44287504 44287838 + 0 NA intron (ENSMUSG00000022696.17, intron 4 of 24) protein_coding-intron (ENSMUSG00000022696.17, intron 4 of 25) -5173 ENSMUSG00000022696.17 ENSMUSG00000022696 ENSMUST00000124651 Sidt1 protein_coding Interval_109230 chr3 138120057 138120249 + 0 NA intron (ENSMUSG00000028158.14, intron 5 of 19) protein_coding-intron (ENSMUSG00000028158.14, intron 3 of 17) 16237 ENSMUSG00000104776.1 ENSMUSG00000104776 ENSMUST00000196625 Gm43691 antisense Interval_98987 chr2 156491808 156492305 + 0 NA intron (ENSMUSG00000027624.20, intron 1 of 21) protein_coding-intron (ENSMUSG00000027624.20, intron 1 of 21) -14338 ENSMUSG00000027624.20 ENSMUSG00000027624 ENSMUST00000137067 Epb41l1 protein_coding Interval_9040 chr1 153243579 153244415 + 0 NA intron (ENSMUSG00000026478.14, intron 13 of 27) protein_coding-intron (ENSMUSG00000026478.14, intron 13 of 27) -4671 ENSMUSG00000026478.14 ENSMUSG00000026478 ENSMUST00000159251 Lamc1 protein_coding Interval_127780 chr5 107726529 107726949 + 0 NA promoter-TSS (ENSMUSG00000029275.18) protein_coding-promoter-TSS (ENSMUSG00000029275.18) 341 ENSMUSG00000090030.1 ENSMUSG00000090030 ENSMUST00000162148 A430072P03Rik processed_transcript Interval_53892 chr14 63164302 63165323 + 0 NA exon (ENSMUSG00000021273.11, exon 1 of 3) protein_coding-exon (ENSMUSG00000021273.11, exon 1 of 3) 113 ENSMUSG00000021273.11 ENSMUSG00000021273 ENSMUST00000224267 Fdft1 protein_coding Interval_162093 chr8 125040932 125041394 + 0 NA Intergenic Intergenic -21992 ENSMUSG00000110683.1 ENSMUSG00000110683 ENSMUST00000212423 Gm45874 processed_pseudogene Interval_154038 chr8 12127830 12128080 + 0 NA Intergenic Intergenic -150864 ENSMUSG00000074473.1 ENSMUSG00000074473 ENSMUST00000098935 A230072I06Rik protein_coding Interval_147800 chr7 73627689 73629790 + 0 NA Intergenic Intergenic -1304 ENSMUSG00000108497.1 ENSMUSG00000108497 ENSMUST00000206393 Gm44738 lincRNA Interval_70882 chr17 15563666 15564916 + 0 NA promoter-TSS (ENSMUSG00000051977.16) protein_coding-promoter-TSS (ENSMUSG00000051977.16) -968 ENSMUSG00000051977.16 ENSMUSG00000051977 ENSMUST00000132675 Prdm9 protein_coding Interval_160333 chr8 108496176 108497117 + 0 NA intron (ENSMUSG00000038872.10, intron 3 of 15) protein_coding-intron (ENSMUSG00000038872.10, intron 3 of 15) 40575 ENSMUSG00000109868.1 ENSMUSG00000109868 ENSMUST00000211262 Gm39244 lincRNA Interval_114650 chr4 83457393 83458081 + 0 NA TTS (ENSMUSG00000028484.16) protein_coding-TTS (ENSMUSG00000028484.16) 2555 ENSMUSG00000028484.16 ENSMUSG00000028484 ENSMUST00000130626 Psip1 protein_coding Interval_171137 chr9 114709892 114711129 + 0 NA intron (ENSMUSG00000032435.9, intron 5 of 12) protein_coding-intron (ENSMUSG00000032435.9, intron 5 of 12) -20606 ENSMUSG00000032434.9 ENSMUSG00000032434 ENSMUST00000035007 Cmtm6 protein_coding Interval_104719 chr3 69736875 69738577 + 0 NA intron (ENSMUSG00000027787.14, intron 7 of 7) protein_coding-intron (ENSMUSG00000027787.14, intron 9 of 15) 13490 ENSMUSG00000027787.14 ENSMUSG00000027787 ENSMUST00000150210 Nmd3 protein_coding Interval_85031 chr19 21680524 21681406 + 0 NA exon (ENSMUSG00000047368.4, exon 3 of 4) protein_coding-exon (ENSMUSG00000047368.4, exon 3 of 4) 331 ENSMUSG00000047368.4 ENSMUSG00000047368 ENSMUST00000236549 Abhd17b protein_coding Interval_158312 chr8 81058089 81058586 + 0 NA intron (ENSMUSG00000037982.16, intron 2 of 2) antisense-intron (ENSMUSG00000037982.16, intron 2 of 2) -2997 ENSMUSG00000109980.1 ENSMUSG00000109980 ENSMUST00000210771 Gm45538 lincRNA Interval_76402 chr17 79960227 79961042 + 0 NA Intergenic Intergenic 21028 ENSMUSG00000117415.1 ENSMUSG00000117415 ENSMUST00000234800 Gm41625 lincRNA Interval_153664 chr8 4372632 4372883 + 0 NA intron (ENSMUSG00000109356.1, intron 7 of 7) unprocessed_pseudogene-intron (ENSMUSG00000109356.1, intron 7 of 7) -10103 ENSMUSG00000108818.1 ENSMUSG00000108818 ENSMUST00000208836 Gm44869 processed_pseudogene Interval_55824 chr14 100752748 100753022 + 0 NA Intergenic Intergenic 7383 ENSMUSG00000088160.1 ENSMUSG00000088160 ENSMUST00000157535 Gm23538 snRNA Interval_93942 chr2 79674146 79674356 + 0 NA Intergenic Intergenic 35069 ENSMUSG00000027007.16 ENSMUSG00000027007 ENSMUST00000133266 Itprid2 protein_coding Interval_104942 chr3 79181214 79182015 + 0 NA promoter-TSS (ENSMUSG00000062232.14) protein_coding-promoter-TSS (ENSMUSG00000062232.14) -14760 ENSMUSG00000064693.1 ENSMUSG00000064693 ENSMUST00000082759 Gm24150 snRNA Interval_170133 chr9 105389541 105390970 + 0 NA intron (ENSMUSG00000035032.12, intron 2 of 11) protein_coding-intron (ENSMUSG00000035032.12, intron 2 of 15) -13141 ENSMUSG00000032567.16 ENSMUSG00000032567 ENSMUST00000190934 Aste1 protein_coding Interval_96224 chr2 120677754 120678013 + 0 NA intron (ENSMUSG00000033705.17, intron 2 of 2) protein_coding-intron (ENSMUSG00000033705.17, intron 9 of 33) 8923 ENSMUSG00000033705.17 ENSMUSG00000033705 ENSMUST00000129384 Stard9 protein_coding Interval_53997 chr14 64201741 64202016 + 0 NA intron (ENSMUSG00000054733.9, intron 5 of 5) protein_coding-intron (ENSMUSG00000054733.9, intron 10 of 10) 85564 ENSMUSG00000114284.1 ENSMUSG00000114284 ENSMUST00000225122 9630015K15Rik antisense Interval_38854 chr12 83425242 83425868 + 0 NA intron (ENSMUSG00000021221.15, intron 1 of 10) protein_coding-intron (ENSMUSG00000021221.15, intron 1 of 8) 62161 ENSMUSG00000021221.15 ENSMUSG00000021221 ENSMUST00000177801 Dpf3 protein_coding Interval_17508 chr10 77319498 77319781 + 0 NA intron (ENSMUSG00000020262.15, intron 4 of 4) protein_coding-intron (ENSMUSG00000020262.15, intron 4 of 10) 57191 ENSMUSG00000020260.9 ENSMUSG00000020260 ENSMUST00000218117 Pofut2 protein_coding Interval_165158 chr9 44897065 44897735 + 0 NA promoter-TSS (ENSMUSG00000080358.1) snRNA-promoter-TSS (ENSMUSG00000080358.1) -465 ENSMUSG00000080358.1 ENSMUSG00000080358 ENSMUST00000116708 Gm26249 snRNA Interval_144033 chr7 19075694 19076977 + 0 NA promoter-TSS (ENSMUSG00000030410.16) protein_coding-promoter-TSS (ENSMUSG00000030410.16) -1658 ENSMUSG00000030410.16 ENSMUSG00000030410 ENSMUST00000138997 Dmwd protein_coding Interval_161301 chr8 119615080 119615295 + 0 NA exon (ENSMUSG00000024266.8, exon 5 of 10) protein_coding-exon (ENSMUSG00000024266.8, exon 5 of 10) 2440 ENSMUSG00000024266.8 ENSMUSG00000024266 ENSMUST00000098361 Adad2 protein_coding Interval_18822 chr10 91123327 91124666 + 0 NA promoter-TSS (ENSMUSG00000061904.12) protein_coding-promoter-TSS (ENSMUSG00000061904.12) 26 ENSMUSG00000061904.12 ENSMUSG00000061904 ENSMUST00000172442 Slc25a3 protein_coding Interval_88101 chr19 59138937 59139487 + 0 NA Intergenic Intergenic 27768 ENSMUSG00000006270.7 ENSMUSG00000006270 ENSMUST00000173710 Vax1 protein_coding Interval_63825 chr16 3786790 3788734 + 0 NA Intergenic Intergenic 12982 ENSMUSG00000118410.1 ENSMUSG00000118410 ENSMUST00000238641 AC139347.1 unitary_pseudogene Interval_54705 chr14 73484535 73484763 + 0 NA Intergenic Intergenic -8444 ENSMUSG00000115530.1 ENSMUSG00000115530 ENSMUST00000226353 Gm4266 processed_pseudogene Interval_75965 chr17 73927045 73927597 + 0 NA intron (ENSMUSG00000024066.9, intron 3 of 32) protein_coding-intron (ENSMUSG00000024066.9, intron 6 of 35) 6592 ENSMUSG00000117182.1 ENSMUSG00000117182 ENSMUST00000233795 Gm18068 processed_pseudogene Interval_31044 chr11 97840584 97841526 + 0 NA promoter-TSS (ENSMUSG00000050538.8) protein_coding-promoter-TSS (ENSMUSG00000050538.8) -264 ENSMUSG00000050538.8 ENSMUSG00000050538 ENSMUST00000170806 B230217C12Rik protein_coding Interval_156531 chr8 49741982 49743186 + 0 NA Intergenic Intergenic -76353 ENSMUSG00000109907.1 ENSMUSG00000109907 ENSMUST00000209286 Gm45321 lincRNA Interval_172570 chrX 36864048 36864945 + 0 NA promoter-TSS (ENSMUSG00000006423.15) protein_coding-promoter-TSS (ENSMUSG00000006423.15) -341 ENSMUSG00000006423.15 ENSMUSG00000006423 ENSMUST00000150873 C330007P06Rik protein_coding Interval_168318 chr9 78645786 78646577 + 0 NA intron (ENSMUSG00000046186.8, intron 5 of 32) protein_coding-intron (ENSMUSG00000046186.8, intron 5 of 32) -16053 ENSMUSG00000091147.1 ENSMUSG00000091147 ENSMUST00000171278 4921509A06Rik antisense Interval_173570 chrX 99567393 99568445 + 0 NA Intergenic Intergenic -97184 ENSMUSG00000034403.16 ENSMUSG00000034403 ENSMUST00000113797 Pja1 protein_coding Interval_69881 chr16 97850792 97852368 + 0 NA promoter-TSS (ENSMUSG00000014039.18) protein_coding-promoter-TSS (ENSMUSG00000014039.18) 25711 ENSMUSG00000105138.1 ENSMUSG00000105138 ENSMUST00000200252 Mir6964 miRNA Interval_87195 chr19 46806288 46808078 + 0 NA intron (ENSMUSG00000064105.13, intron 1 of 1) protein_coding-intron (ENSMUSG00000064105.13, intron 1 of 6) -58477 ENSMUSG00000064105.13 ENSMUSG00000064105 ENSMUST00000235671 Cnnm2 protein_coding Interval_100455 chr2 169094718 169095141 + 0 NA Intergenic Intergenic -11524 ENSMUSG00000086238.1 ENSMUSG00000086238 ENSMUST00000144607 Gm14258 lincRNA Interval_76378 chr17 79732964 79733258 + 0 NA promoter-TSS (ENSMUSG00000117426.1) lincRNA-promoter-TSS (ENSMUSG00000117426.1) -763 ENSMUSG00000117426.1 ENSMUSG00000117426 ENSMUST00000234743 Gm33055 lincRNA Interval_6702 chr1 118872921 118874318 + 0 NA intron (ENSMUSG00000048402.14, intron 2 of 7) protein_coding-intron (ENSMUSG00000048402.14, intron 3 of 13) 63483 ENSMUSG00000100040.1 ENSMUSG00000100040 ENSMUST00000190981 Gm28467 processed_pseudogene Interval_6320 chr1 105850894 105851125 + 0 NA Intergenic Intergenic 40003 ENSMUSG00000102690.1 ENSMUSG00000102690 ENSMUST00000194221 Gm37779 TEC Interval_74028 chr17 46153024 46154363 + 0 NA promoter-TSS (ENSMUSG00000034509.9) protein_coding-promoter-TSS (ENSMUSG00000034509.9) -140 ENSMUSG00000034509.9 ENSMUSG00000034509 ENSMUST00000171172 Mad2l1bp protein_coding Interval_101616 chr3 7795683 7796383 + 0 NA Intergenic Intergenic -97302 ENSMUSG00000103399.1 ENSMUSG00000103399 ENSMUST00000194764 Gm29747 processed_pseudogene Interval_75347 chr17 66048328 66049148 + 0 NA intron (ENSMUSG00000034647.15, intron 3 of 4) protein_coding-intron (ENSMUSG00000034647.15, intron 3 of 12) -37356 ENSMUSG00000094158.1 ENSMUSG00000094158 ENSMUST00000083372 Gm23264 snRNA Interval_155761 chr8 37009677 37009851 + 0 NA intron (ENSMUSG00000110242.1, intron 2 of 2) antisense-intron (ENSMUSG00000110242.1, intron 2 of 2) 14474 ENSMUSG00000110242.1 ENSMUSG00000110242 ENSMUST00000209814 G630064G18Rik antisense Interval_119535 chr4 138216135 138217726 + 0 NA promoter-TSS (ENSMUSG00000028759.13) protein_coding-promoter-TSS (ENSMUSG00000028759.13) -201 ENSMUSG00000028759.13 ENSMUSG00000028759 ENSMUST00000155344 Hp1bp3 protein_coding Interval_43477 chr13 31713567 31713802 + 0 NA Intergenic Intergenic 24056 ENSMUSG00000065843.1 ENSMUSG00000065843 ENSMUST00000083909 Gm25186 snRNA Interval_16222 chr10 61522638 61522882 + 0 NA intron (ENSMUSG00000037151.8, intron 2 of 4) protein_coding-intron (ENSMUSG00000037151.8, intron 2 of 4) -12175 ENSMUSG00000112710.1 ENSMUSG00000112710 ENSMUST00000219782 Gm17829 processed_pseudogene Interval_151235 chr7 119959656 119959895 + 0 NA intron (ENSMUSG00000052273.4, intron 50 of 60) protein_coding-intron (ENSMUSG00000052273.4, intron 50 of 60) -10046 ENSMUSG00000088172.1 ENSMUSG00000088172 ENSMUST00000157547 Gm25217 snRNA Interval_50921 chr14 20774987 20775464 + 0 NA intron (ENSMUSG00000021820.18, intron 3 of 21) protein_coding-intron (ENSMUSG00000021820.18, intron 3 of 20) 18741 ENSMUSG00000021820.18 ENSMUSG00000021820 ENSMUST00000225635 Camk2g protein_coding Interval_99912 chr2 165770848 165771488 + 0 NA TTS (ENSMUSG00000017897.18) protein_coding-TTS (ENSMUSG00000017897.18) -86516 ENSMUSG00000085274.1 ENSMUSG00000085274 ENSMUST00000155786 BC046401 processed_transcript Interval_31399 chr11 100446853 100447927 + 0 NA exon (ENSMUSG00000001558.5, exon 3 of 5) protein_coding-exon (ENSMUSG00000001558.5, exon 3 of 5) -4915 ENSMUSG00000099193.1 ENSMUSG00000099193 ENSMUST00000183660 Gm27374 miRNA Interval_144745 chr7 27963187 27963442 + 0 NA exon (ENSMUSG00000063047.9, exon 4 of 4) protein_coding-exon (ENSMUSG00000063047.9, exon 4 of 4) 12054 ENSMUSG00000063047.9 ENSMUSG00000063047 ENSMUST00000207098 Zfp780b protein_coding Interval_54367 chr14 67951034 67952085 + 0 NA Intergenic Intergenic -91814 ENSMUSG00000098866.1 ENSMUSG00000098866 ENSMUST00000183732 Mir6539 miRNA Interval_96981 chr2 130239624 130240288 + 0 NA intron (ENSMUSG00000060332.9, intron 9 of 18) protein_coding-intron (ENSMUSG00000060332.9, intron 10 of 19) -35550 ENSMUSG00000080610.1 ENSMUSG00000080610 ENSMUST00000116960 Snord110 snoRNA Interval_169181 chr9 95322693 95323051 + 0 NA Intergenic Intergenic 83850 ENSMUSG00000033350.7 ENSMUSG00000033350 ENSMUST00000036267 Chst2 protein_coding Interval_24760 chr11 36913516 36913880 + 0 NA intron (ENSMUSG00000049336.16, intron 1 of 28) protein_coding-intron (ENSMUSG00000049336.16, intron 1 of 28) 30468 ENSMUSG00000049336.16 ENSMUSG00000049336 ENSMUST00000157030 Tenm2 protein_coding Interval_105894 chr3 89956060 89957221 + 0 NA intron (ENSMUSG00000060671.12, intron 8 of 9) protein_coding-intron (ENSMUSG00000060671.12, intron 8 of 26) -10168 ENSMUSG00000060671.12 ENSMUSG00000060671 ENSMUST00000171422 Atp8b2 protein_coding Interval_69154 chr16 91010549 91011729 + 0 NA promoter-TSS (ENSMUSG00000022973.18) protein_coding-promoter-TSS (ENSMUSG00000022973.18) -110 ENSMUSG00000087354.1 ENSMUSG00000087354 ENSMUST00000125902 4930404I05Rik processed_transcript Interval_94422 chr2 91112244 91113252 + 0 NA intron (ENSMUSG00000002111.8, intron 2 of 3) protein_coding-intron (ENSMUSG00000002111.8, intron 2 of 4) -5396 ENSMUSG00000002100.15 ENSMUSG00000002100 ENSMUST00000169776 Mybpc3 protein_coding Interval_138791 chr6 91877516 91878672 + 0 NA promoter-TSS (ENSMUSG00000034083.16) protein_coding-promoter-TSS (ENSMUSG00000034083.16) -109 ENSMUSG00000108310.1 ENSMUSG00000108310 ENSMUST00000206250 Gm44712 TEC Interval_171976 chr9 123112184 123113796 + 0 NA promoter-TSS (ENSMUSG00000025785.5) protein_coding-promoter-TSS (ENSMUSG00000025785.5) 157 ENSMUSG00000025786.17 ENSMUSG00000025786 ENSMUST00000130717 Zdhhc3 protein_coding Interval_73977 chr17 45805156 45806111 + 0 NA TTS (ENSMUSG00000117139.1) lincRNA-TTS (ENSMUSG00000117139.1) 16690 ENSMUSG00000117139.1 ENSMUSG00000117139 ENSMUST00000233237 Gm35692 lincRNA Interval_35712 chr12 28578920 28579418 + 0 NA intron (ENSMUSG00000020636.14, intron 1 of 11) protein_coding-intron (ENSMUSG00000020636.14, intron 1 of 11) 3346 ENSMUSG00000020636.14 ENSMUSG00000020636 ENSMUST00000020965 Allc protein_coding Interval_111373 chr4 19951675 19952238 + 0 NA intron (ENSMUSG00000086332.2, intron 4 of 4) transcribed_unitary_pseudogene-intron (ENSMUSG00000086332.2, intron 4 of 4) -9018 ENSMUSG00000086332.2 ENSMUSG00000086332 ENSMUST00000125909 4930480G23Rik transcribed_unitary_pseudogene Interval_63796 chr15 103495476 103495776 + 0 NA intron (ENSMUSG00000022488.9, intron 11 of 11) protein_coding-intron (ENSMUSG00000022488.9, intron 30 of 30) 16478 ENSMUSG00000022488.9 ENSMUSG00000022488 ENSMUST00000230276 Nckap1l protein_coding Interval_163988 chr9 30438184 30439277 + 0 NA intron (ENSMUSG00000031993.7, intron 6 of 9) protein_coding-intron (ENSMUSG00000031993.7, intron 7 of 10) 9485 ENSMUSG00000031993.7 ENSMUSG00000031993 ENSMUST00000216545 Snx19 protein_coding Interval_98547 chr2 153143061 153143570 + 0 NA intron (ENSMUSG00000003283.15, intron 10 of 12) protein_coding-intron (ENSMUSG00000003283.15, intron 10 of 12) -11698 ENSMUSG00000089499.1 ENSMUSG00000089499 ENSMUST00000158874 Gm25643 snRNA Interval_122791 chr5 25529104 25530322 + 0 NA promoter-TSS (ENSMUSG00000101856.1) lincRNA-promoter-TSS (ENSMUSG00000101856.1) -300 ENSMUSG00000101856.1 ENSMUSG00000101856 ENSMUST00000188465 1700096K18Rik lincRNA Interval_148093 chr7 79189089 79189834 + 0 NA Intergenic Intergenic -41230 ENSMUSG00000030605.15 ENSMUSG00000030605 ENSMUST00000206844 Mfge8 protein_coding Interval_129254 chr5 118464565 118465773 + 0 NA Intergenic Intergenic -21798 ENSMUSG00000082365.2 ENSMUSG00000082365 ENSMUST00000119191 Gm15754 transcribed_processed_pseudogene Interval_114853 chr4 86341697 86343257 + 0 NA exon (ENSMUSG00000066113.16, exon 6 of 16) protein_coding-exon (ENSMUSG00000066113.16, exon 6 of 16) 99864 ENSMUSG00000083272.1 ENSMUSG00000083272 ENSMUST00000118478 Gm12550 processed_pseudogene Interval_164841 chr9 42399288 42400122 + 0 NA promoter-TSS (ENSMUSG00000037705.13) protein_coding-promoter-TSS (ENSMUSG00000037705.13) 22 ENSMUSG00000037705.13 ENSMUSG00000037705 ENSMUST00000160940 Tecta protein_coding Interval_53828 chr14 62363241 62363439 + 0 NA intron (ENSMUSG00000021932.13, intron 7 of 7) protein_coding-intron (ENSMUSG00000021932.13, intron 7 of 10) 31215 ENSMUSG00000021932.13 ENSMUSG00000021932 ENSMUST00000156608 Rnaseh2b protein_coding Interval_157704 chr8 72403381 72403985 + 0 NA intron (ENSMUSG00000006276.10, intron 1 of 21) protein_coding-intron (ENSMUSG00000006276.10, intron 1 of 23) 17755 ENSMUSG00000006276.10 ENSMUSG00000006276 ENSMUST00000211977 Eps15l1 protein_coding Interval_56764 chr14 121919925 121920237 + 0 NA intron (ENSMUSG00000041765.6, intron 1 of 3) protein_coding-intron (ENSMUSG00000041765.6, intron 4 of 8) -4300 ENSMUSG00000050350.8 ENSMUSG00000050350 ENSMUST00000055475 Gpr18 protein_coding Interval_162267 chr8 126550717 126551818 + 0 NA Intergenic Intergenic -15703 ENSMUSG00000097060.1 ENSMUSG00000097060 ENSMUST00000181773 Gm26759 antisense Interval_154079 chr8 12524151 12524778 + 0 NA Intergenic Intergenic 21565 ENSMUSG00000109582.1 ENSMUSG00000109582 ENSMUST00000211062 4933439N14Rik lincRNA Interval_790 chr1 11283876 11284258 + 0 NA promoter-TSS (ENSMUSG00000048960.13) protein_coding-promoter-TSS (ENSMUSG00000048960.13) -59893 ENSMUSG00000101827.1 ENSMUSG00000101827 ENSMUST00000187404 Gm28686 processed_pseudogene Interval_66958 chr16 38804886 38805518 + 0 NA Intergenic Intergenic -8788 ENSMUSG00000081444.1 ENSMUSG00000081444 ENSMUST00000120118 Gm15803 processed_pseudogene Interval_157155 chr8 66550212 66551070 + 0 NA Intergenic Intergenic 38367 ENSMUSG00000085082.1 ENSMUSG00000085082 ENSMUST00000128324 Gm16330 processed_pseudogene Interval_87561 chr19 53448801 53449896 + 0 NA TTS (ENSMUSG00000097636.8) processed_transcript-TTS (ENSMUSG00000097636.8) -11274 ENSMUSG00000097779.2 ENSMUSG00000097779 ENSMUST00000180442 4833407H14Rik lincRNA Interval_161906 chr8 123668743 123669431 + 0 NA intron (ENSMUSG00000092329.1, intron 1 of 15) protein_coding-intron (ENSMUSG00000092329.1, intron 1 of 15) 15158 ENSMUSG00000039960.5 ENSMUSG00000039960 ENSMUST00000045487 Rhou protein_coding Interval_19393 chr10 98923850 98924222 + 0 NA intron (ENSMUSG00000019943.10, intron 1 of 8) protein_coding-intron (ENSMUSG00000019943.10, intron 1 of 20) -66844 ENSMUSG00000019943.10 ENSMUSG00000019943 ENSMUST00000218419 Atp2b1 protein_coding Interval_38836 chr12 83194696 83195276 + 0 NA Intergenic Intergenic 72772 ENSMUSG00000103387.1 ENSMUSG00000103387 ENSMUST00000192978 1700030I03Rik TEC Interval_92787 chr2 65430771 65431379 + 0 NA Intergenic Intergenic -54793 ENSMUSG00000088197.1 ENSMUSG00000088197 ENSMUST00000157572 Gm24138 snoRNA Interval_142580 chr6 143521982 143522180 + 0 NA Intergenic Intergenic 13427 ENSMUSG00000084971.1 ENSMUSG00000084971 ENSMUST00000132321 4930579D09Rik lincRNA Interval_120931 chr4 151736699 151737248 + 0 NA intron (ENSMUSG00000014592.21, intron 2 of 7) protein_coding-intron (ENSMUSG00000014592.21, intron 3 of 23) 124731 ENSMUSG00000014592.21 ENSMUSG00000014592 ENSMUST00000135780 Camta1 protein_coding Interval_13154 chr10 12578684 12579934 + 0 NA intron (ENSMUSG00000019820.11, intron 51 of 74) protein_coding-intron (ENSMUSG00000019820.11, intron 50 of 73) 109553 ENSMUSG00000019820.11 ENSMUSG00000019820 ENSMUST00000219135 Utrn protein_coding Interval_78040 chr18 7318515 7318803 + 0 NA Intergenic Intergenic -134586 ENSMUSG00000061802.6 ENSMUSG00000061802 ENSMUST00000234196 Armc4 protein_coding Interval_109036 chr3 135327074 135329038 + 0 NA intron (ENSMUSG00000037994.14, intron 4 of 9) protein_coding-intron (ENSMUSG00000037994.14, intron 7 of 12) -20274 ENSMUSG00000050150.16 ENSMUSG00000050150 ENSMUST00000159276 Slc9b1 protein_coding Interval_56328 chr14 117546977 117548088 + 0 NA intron (ENSMUSG00000058571.11, intron 3 of 9) protein_coding-intron (ENSMUSG00000058571.11, intron 3 of 8) 406315 ENSMUSG00000098648.1 ENSMUSG00000098648 ENSMUST00000183564 Mir6239 miRNA Interval_51417 chr14 27378711 27379568 + 0 NA intron (ENSMUSG00000021895.10, intron 6 of 13) protein_coding-intron (ENSMUSG00000021895.10, intron 3 of 10) 1711 ENSMUSG00000093034.1 ENSMUSG00000093034 ENSMUST00000175293 Gm23633 miRNA Interval_5054 chr1 84709464 84711283 + 0 NA Intergenic Intergenic 14534 ENSMUSG00000093254.1 ENSMUSG00000093254 ENSMUST00000175513 Mir5126 miRNA Interval_102765 chr3 30887152 30887679 + 0 NA intron (ENSMUSG00000037661.14, intron 2 of 2) protein_coding-intron (ENSMUSG00000037661.14, intron 2 of 3) 31422 ENSMUSG00000037661.14 ENSMUSG00000037661 ENSMUST00000147697 Gpr160 protein_coding Interval_148052 chr7 78882941 78884376 + 0 NA Intergenic Intergenic -4619 ENSMUSG00000065609.1 ENSMUSG00000065609 ENSMUST00000083675 Mir7-2 miRNA Interval_8448 chr1 139470343 139470527 + 0 NA intron (ENSMUSG00000033952.14, intron 10 of 26) protein_coding-intron (ENSMUSG00000033952.14, intron 10 of 27) 15663 ENSMUSG00000033952.14 ENSMUSG00000033952 ENSMUST00000196272 Aspm protein_coding Interval_96337 chr2 121747950 121748845 + 0 NA intron (ENSMUSG00000027238.17, intron 1 of 7) protein_coding-intron (ENSMUSG00000027238.17, intron 1 of 13) 29867 ENSMUSG00000084244.1 ENSMUSG00000084244 ENSMUST00000118165 Gm14020 processed_pseudogene Interval_153989 chr8 11658650 11659109 + 0 NA intron (ENSMUSG00000031509.10, intron 1 of 2) protein_coding-intron (ENSMUSG00000031509.10, intron 4 of 5) 3725 ENSMUSG00000031509.10 ENSMUSG00000031509 ENSMUST00000191350 1700016D06Rik protein_coding Interval_105774 chr3 89262035 89262807 + 0 NA intron (ENSMUSG00000042737.9, intron 1 of 2) protein_coding-intron (ENSMUSG00000042737.9, intron 1 of 2) -4218 ENSMUSG00000042737.9 ENSMUSG00000042737 ENSMUST00000137975 Dpm3 protein_coding Interval_166200 chr9 57462807 57463468 + 0 NA intron (ENSMUSG00000040722.7, intron 1 of 5) protein_coding-intron (ENSMUSG00000040722.7, intron 1 of 6) 4900 ENSMUSG00000040722.7 ENSMUSG00000040722 ENSMUST00000215059 Scamp5 protein_coding Interval_173824 chrX 105151788 105152420 + 0 NA Intergenic Intergenic 11255 ENSMUSG00000082245.1 ENSMUSG00000082245 ENSMUST00000120712 Gm6292 processed_pseudogene Interval_50347 chr14 11974880 11975646 + 0 NA intron (ENSMUSG00000085883.2, intron 1 of 1) protein_coding-intron (ENSMUSG00000021745.14, intron 4 of 29) 5945 ENSMUSG00000085883.2 ENSMUSG00000085883 ENSMUST00000151564 Gm3848 antisense Interval_118385 chr4 131023621 131024083 + 0 NA Intergenic Intergenic -13378 ENSMUSG00000086262.7 ENSMUSG00000086262 ENSMUST00000153810 A930031H19Rik lincRNA Interval_150647 chr7 113069234 113069499 + 0 NA Intergenic Intergenic -50332 ENSMUSG00000088671.1 ENSMUSG00000088671 ENSMUST00000158046 Gm23662 rRNA Interval_102754 chr3 30818633 30819000 + 0 NA promoter-TSS (ENSMUSG00000027706.8) protein_coding-promoter-TSS (ENSMUSG00000027706.8) -35 ENSMUSG00000027706.8 ENSMUSG00000027706 ENSMUST00000195072 Sec62 protein_coding Interval_96799 chr2 128395188 128396523 + 0 NA intron (ENSMUSG00000074813.14, intron 2 of 2) lincRNA-intron (ENSMUSG00000074813.14, intron 2 of 2) -27799 ENSMUSG00000079053.3 ENSMUSG00000079053 ENSMUST00000131961 Gm14010 lincRNA Interval_14901 chr10 40960936 40962100 + 0 NA Intergenic Intergenic -73677 ENSMUSG00000111098.1 ENSMUSG00000111098 ENSMUST00000214667 Gm48057 lincRNA Interval_13138 chr10 12310598 12311782 + 0 NA Intergenic Intergenic 13471 ENSMUSG00000112156.1 ENSMUSG00000112156 ENSMUST00000219252 Gm48723 lincRNA Interval_143993 chr7 18839939 18841220 + 0 NA intron (ENSMUSG00000040987.15, intron 1 of 5) protein_coding-intron (ENSMUSG00000040987.15, intron 1 of 5) 613 ENSMUSG00000040987.15 ENSMUSG00000040987 ENSMUST00000207014 Mill2 protein_coding Interval_62663 chr15 96096179 96096959 + 0 NA Intergenic Intergenic -41744 ENSMUSG00000078925.11 ENSMUSG00000078925 ENSMUST00000140253 D030018L15Rik lincRNA Interval_42180 chr13 9630304 9631124 + 0 NA intron (ENSMUSG00000048264.16, intron 8 of 15) protein_coding-intron (ENSMUSG00000048264.16, intron 31 of 38) 6375 ENSMUSG00000113355.1 ENSMUSG00000113355 ENSMUST00000223052 Gm48888 TEC Interval_1121 chr1 15848249 15848580 + 0 NA Intergenic Intergenic -4917 ENSMUSG00000104379.1 ENSMUSG00000104379 ENSMUST00000194867 Gm37509 TEC Interval_121433 chr4 155759989 155762001 + 0 NA promoter-TSS (ENSMUSG00000029036.18) protein_coding-promoter-TSS (ENSMUSG00000029036.18) -67 ENSMUSG00000029036.18 ENSMUSG00000029036 ENSMUST00000134317 Atad3a protein_coding Interval_40083 chr12 101057492 101057923 + 0 NA exon (ENSMUSG00000041846.15, exon 4 of 4) protein_coding-exon (ENSMUSG00000041846.15, exon 4 of 4) -14162 ENSMUSG00000041846.15 ENSMUSG00000041846 ENSMUST00000222302 Ppp4r3a protein_coding Interval_119651 chr4 139000891 139001854 + 0 NA intron (ENSMUSG00000041143.16, intron 6 of 12) protein_coding-intron (ENSMUSG00000041143.16, intron 6 of 15) 28463 ENSMUSG00000041143.16 ENSMUSG00000041143 ENSMUST00000124835 Tmco4 protein_coding Interval_147013 chr7 58224433 58226281 + 0 NA Intergenic Intergenic -77130 ENSMUSG00000077356.1 ENSMUSG00000077356 ENSMUST00000104168 Gm26288 snoRNA Interval_22631 chr11 12395538 12395787 + 0 NA intron (ENSMUSG00000020173.17, intron 1 of 11) protein_coding-intron (ENSMUSG00000020173.17, intron 1 of 14) 16482 ENSMUSG00000020173.17 ENSMUSG00000020173 ENSMUST00000146067 Cobl protein_coding Interval_15388 chr10 45329290 45329500 + 0 NA Intergenic Intergenic -24113 ENSMUSG00000071317.4 ENSMUSG00000071317 ENSMUST00000213557 Bves protein_coding Interval_46679 chr13 68706577 68706814 + 0 NA intron (ENSMUSG00000021536.7, intron 14 of 24) protein_coding-intron (ENSMUSG00000021536.7, intron 14 of 24) -103385 ENSMUSG00000098242.1 ENSMUSG00000098242 ENSMUST00000182703 Gm26929 processed_pseudogene Interval_120746 chr4 150398779 150399054 + 0 NA intron (ENSMUSG00000039852.17, intron 1 of 22) protein_coding-intron (ENSMUSG00000039852.17, intron 1 of 22) 77723 ENSMUSG00000089292.1 ENSMUSG00000089292 ENSMUST00000158667 Gm23209 snRNA Interval_174356 chrX 147540904 147541895 + 0 NA intron (ENSMUSG00000031290.14, intron 1 of 20) protein_coding-intron (ENSMUSG00000031290.14, intron 1 of 20) -29237 ENSMUSG00000031290.14 ENSMUSG00000031290 ENSMUST00000151730 Lrch2 protein_coding Interval_85817 chr19 32132320 32134002 + 0 NA intron (ENSMUSG00000040451.18, intron 8 of 10) protein_coding-intron (ENSMUSG00000040451.18, intron 7 of 9) 76112 ENSMUSG00000118064.1 ENSMUSG00000118064 ENSMUST00000235377 Gm50210 sense_intronic Interval_34554 chr12 5073782 5075002 + 0 NA Intergenic Intergenic -6944 ENSMUSG00000112723.1 ENSMUSG00000112723 ENSMUST00000219035 Gm9110 processed_pseudogene Interval_75252 chr17 65420003 65420556 + 0 NA intron (ENSMUSG00000045036.15, intron 9 of 12) protein_coding-intron (ENSMUSG00000045036.15, intron 12 of 15) -7199 ENSMUSG00000117299.1 ENSMUSG00000117299 ENSMUST00000233191 Gm9288 processed_pseudogene Interval_1332 chr1 20751149 20751388 + 0 NA Intergenic Intergenic 20363 ENSMUSG00000025929.4 ENSMUSG00000025929 ENSMUST00000027061 Il17a protein_coding Interval_28355 chr11 75348044 75349044 + 0 NA promoter-TSS (ENSMUSG00000000751.13) protein_coding-promoter-TSS (ENSMUSG00000000751.13) 49 ENSMUSG00000018809.2 ENSMUSG00000018809 ENSMUST00000135774 Smyd4 protein_coding Interval_168459 chr9 81126083 81126545 + 0 NA intron (ENSMUSG00000097655.3, intron 1 of 3) lincRNA-intron (ENSMUSG00000097655.3, intron 1 of 3) -109356 ENSMUSG00000099085.1 ENSMUSG00000099085 ENSMUST00000184817 Gm8151 processed_pseudogene Interval_55308 chr14 82159180 82160061 + 0 NA Intergenic Intergenic -17042 ENSMUSG00000115825.1 ENSMUSG00000115825 ENSMUST00000228751 Gm49048 lincRNA Interval_146679 chr7 49373105 49373356 + 0 NA intron (ENSMUSG00000052512.17, intron 3 of 4) protein_coding-intron (ENSMUSG00000052512.17, intron 2 of 5) 27136 ENSMUSG00000109051.1 ENSMUSG00000109051 ENSMUST00000208060 Gm44913 TEC Interval_86393 chr19 40207281 40208154 + 0 NA Intergenic Intergenic -4665 ENSMUSG00000098091.1 ENSMUSG00000098091 ENSMUST00000182456 Gm16470 processed_pseudogene Interval_148923 chr7 90105271 90105645 + 0 NA Intergenic Intergenic 2510 ENSMUSG00000062235.6 ENSMUSG00000062235 ENSMUST00000058881 Gm5341 processed_pseudogene Interval_80681 chr18 46276623 46277285 + 0 NA intron (ENSMUSG00000024477.4, intron 1 of 2) protein_coding-intron (ENSMUSG00000024477.4, intron 1 of 7) 3873 ENSMUSG00000024477.4 ENSMUSG00000024477 ENSMUST00000236205 Pggt1b protein_coding Interval_30597 chr11 95350309 95350616 + 0 NA intron (ENSMUSG00000038893.12, intron 2 of 5) protein_coding-intron (ENSMUSG00000038893.12, intron 1 of 7) -13054 ENSMUSG00000085509.1 ENSMUSG00000085509 ENSMUST00000143302 Gm11521 antisense Interval_69886 chr16 97890657 97891130 + 0 NA intron (ENSMUSG00000045975.8, intron 3 of 11) protein_coding-intron (ENSMUSG00000045975.8, intron 3 of 13) -13602 ENSMUSG00000105138.1 ENSMUSG00000105138 ENSMUST00000200252 Mir6964 miRNA Interval_110206 chr3 154269828 154270506 + 0 NA TTS (ENSMUSG00000028360.10) protein_coding-TTS (ENSMUSG00000028360.10) -20667 ENSMUSG00000106500.1 ENSMUSG00000106500 ENSMUST00000200319 Gm42540 TEC Interval_64737 chr16 14673887 14674211 + 0 NA Intergenic Intergenic -31803 ENSMUSG00000022676.7 ENSMUSG00000022676 ENSMUST00000023356 Snai2 protein_coding Interval_69866 chr16 97726561 97726783 + 0 NA Intergenic Intergenic 37115 ENSMUSG00000005251.15 ENSMUSG00000005251 ENSMUST00000019386 Ripk4 protein_coding Interval_109818 chr3 148152232 148152566 + 0 NA Intergenic Intergenic 22155 ENSMUSG00000106285.1 ENSMUSG00000106285 ENSMUST00000196226 Gm43574 processed_transcript Interval_82111 chr18 67799458 67800718 + 0 NA promoter-TSS (ENSMUSG00000024542.9) protein_coding-promoter-TSS (ENSMUSG00000024542.9) -145 ENSMUSG00000118134.1 ENSMUSG00000118134 ENSMUST00000237968 4930549G23Rik antisense Interval_40695 chr12 107500551 107500872 + 0 NA Intergenic Intergenic 12079 ENSMUSG00000060375.2 ENSMUSG00000060375 ENSMUST00000082269 3110018I06Rik lincRNA Interval_74044 chr17 46244682 46245273 + 0 NA TTS (ENSMUSG00000067148.15) protein_coding-TTS (ENSMUSG00000067148.15) 2990 ENSMUSG00000067148.15 ENSMUSG00000067148 ENSMUST00000124126 Polr1c protein_coding Interval_95660 chr2 113749106 113750180 + 0 NA exon (ENSMUSG00000074934.3, exon 2 of 2) protein_coding-exon (ENSMUSG00000074934.3, exon 2 of 2) 9003 ENSMUSG00000074934.3 ENSMUSG00000074934 ENSMUST00000099575 Grem1 protein_coding Interval_53317 chr14 56102154 56102812 + 0 NA promoter-TSS (ENSMUSG00000040314.2) protein_coding-promoter-TSS (ENSMUSG00000040314.2) -708 ENSMUSG00000040314.2 ENSMUSG00000040314 ENSMUST00000225312 Ctsg protein_coding Interval_132948 chr5 148912440 148912726 + 0 NA intron (ENSMUSG00000041298.15, intron 3 of 3) protein_coding-intron (ENSMUSG00000041298.15, intron 3 of 10) -14105 ENSMUSG00000106810.1 ENSMUSG00000106810 ENSMUST00000202134 Gm43600 unprocessed_pseudogene Interval_60150 chr15 66500424 66501111 + 0 NA intron (ENSMUSG00000022375.6, intron 1 of 11) protein_coding-intron (ENSMUSG00000022375.6, intron 1 of 11) 143 ENSMUSG00000022375.6 ENSMUSG00000022375 ENSMUST00000023006 Lrrc6 protein_coding Interval_163798 chr9 26122145 26122443 + 0 NA Intergenic Intergenic -88815 ENSMUSG00000111240.1 ENSMUSG00000111240 ENSMUST00000213586 Gm39312 lincRNA Interval_114368 chr4 74355699 74356810 + 0 NA intron (ENSMUSG00000028397.13, intron 15 of 21) protein_coding-intron (ENSMUSG00000028397.13, intron 15 of 21) 93445 ENSMUSG00000028397.13 ENSMUSG00000028397 ENSMUST00000150439 Kdm4c protein_coding Interval_73105 chr17 34836359 34837538 + 0 NA promoter-TSS (ENSMUSG00000040482.16) protein_coding-promoter-TSS (ENSMUSG00000040482.16) -71 ENSMUSG00000040482.16 ENSMUSG00000040482 ENSMUST00000173768 Dxo protein_coding Interval_71599 chr17 24766249 24767195 + 0 NA Intergenic Intergenic -12981 ENSMUSG00000117379.1 ENSMUSG00000117379 ENSMUST00000234130 Gm50022 lincRNA Interval_75129 chr17 63787882 63788091 + 0 NA Intergenic Intergenic -75076 ENSMUSG00000000127.15 ENSMUSG00000000127 ENSMUST00000038080 Fer protein_coding Interval_159971 chr8 105481018 105482007 + 0 NA intron (ENSMUSG00000039199.6, intron 5 of 13) protein_coding-intron (ENSMUSG00000039199.6, intron 2 of 10) -12102 ENSMUSG00000014846.12 ENSMUSG00000014846 ENSMUST00000176419 Tppp3 protein_coding Interval_19220 chr10 95578466 95578652 + 0 NA Intergenic Intergenic -14413 ENSMUSG00000020029.6 ENSMUSG00000020029 ENSMUST00000020217 Nudt4 protein_coding Interval_162772 chr9 8911734 8911981 + 0 NA intron (ENSMUSG00000031870.16, intron 2 of 7) protein_coding-intron (ENSMUSG00000031870.16, intron 2 of 7) 12024 ENSMUSG00000031870.16 ENSMUSG00000031870 ENSMUST00000098986 Pgr protein_coding Interval_128397 chr5 113114517 113115087 + 0 NA intron (ENSMUSG00000051339.10, intron 6 of 12) protein_coding-intron (ENSMUSG00000051339.10, intron 1 of 7) 4662 ENSMUSG00000104576.1 ENSMUSG00000104576 ENSMUST00000197638 F830115B05Rik TEC Interval_146774 chr7 50513649 50514144 + 0 NA intron (ENSMUSG00000055409.14, intron 9 of 9) protein_coding-intron (ENSMUSG00000055409.14, intron 13 of 19) 62075 ENSMUSG00000085265.1 ENSMUSG00000085265 ENSMUST00000136672 Nell1os antisense Interval_72129 chr17 28200156 28200373 + 0 NA intron (ENSMUSG00000024220.14, intron 6 of 12) protein_coding-intron (ENSMUSG00000024220.14, intron 7 of 14) -7562 ENSMUSG00000002257.8 ENSMUSG00000002257 ENSMUST00000233534 Def6 protein_coding Interval_29342 chr11 83326601 83328023 + 0 NA intron (ENSMUSG00000035152.14, intron 5 of 5) protein_coding-intron (ENSMUSG00000035152.14, intron 5 of 21) 28288 ENSMUSG00000035152.14 ENSMUSG00000035152 ENSMUST00000176523 Ap2b1 protein_coding Interval_106708 chr3 99253133 99254382 + 0 NA promoter-TSS (ENSMUSG00000027868.11) protein_coding-promoter-TSS (ENSMUSG00000027868.11) 7528 ENSMUSG00000105689.1 ENSMUSG00000105689 ENSMUST00000196228 Gm43120 antisense Interval_39627 chr12 91659569 91659887 + 0 NA intron (ENSMUSG00000020961.15, intron 3 of 4) protein_coding-intron (ENSMUSG00000020961.15, intron 4 of 6) -24937 ENSMUSG00000086689.1 ENSMUSG00000086689 ENSMUST00000151945 Gm16876 antisense Interval_106502 chr3 96724563 96724924 + 0 NA promoter-TSS (ENSMUSG00000065669.1) snoRNA-promoter-TSS (ENSMUSG00000065669.1) -343 ENSMUSG00000065669.1 ENSMUSG00000065669 ENSMUST00000083735 Gm22581 snoRNA Interval_9587 chr1 159833137 159833342 + 0 NA intron (ENSMUSG00000015829.13, intron 1 of 1) protein_coding-intron (ENSMUSG00000015829.13, intron 1 of 21) 98487 ENSMUSG00000103719.1 ENSMUSG00000103719 ENSMUST00000195328 Gm38039 antisense Interval_8947 chr1 152624617 152625610 + 0 NA promoter-TSS (ENSMUSG00000026482.13) protein_coding-promoter-TSS (ENSMUSG00000026482.13) 62388 ENSMUSG00000086145.1 ENSMUSG00000086145 ENSMUST00000139309 Gm15479 sense_intronic Interval_143822 chr7 16499818 16500038 + 0 NA TTS (ENSMUSG00000099423.1) processed_pseudogene-TTS (ENSMUSG00000099423.1) 1196 ENSMUSG00000099423.1 ENSMUSG00000099423 ENSMUST00000189720 Gm17826 processed_pseudogene Interval_22310 chr11 8663613 8665003 + 0 NA intron (ENSMUSG00000020422.14, intron 1 of 30) protein_coding-intron (ENSMUSG00000020422.14, intron 1 of 30) 373 ENSMUSG00000020422.14 ENSMUSG00000020422 ENSMUST00000134823 Tns3 protein_coding Interval_151364 chr7 121797161 121797386 + 0 NA Intergenic Intergenic 41792 ENSMUSG00000108410.1 ENSMUSG00000108410 ENSMUST00000205603 Gm44740 TEC Interval_130377 chr5 127087674 127088686 + 0 NA intron (ENSMUSG00000105490.1, intron 6 of 6) lincRNA-intron (ENSMUSG00000105490.1, intron 6 of 6) -19889 ENSMUSG00000105575.1 ENSMUSG00000105575 ENSMUST00000196673 Gm43475 lincRNA Interval_19353 chr10 97562340 97563511 + 0 NA Intergenic Intergenic -2203 ENSMUSG00000036446.5 ENSMUSG00000036446 ENSMUST00000038160 Lum protein_coding Interval_105598 chr3 87999449 88000859 + 0 NA promoter-TSS (ENSMUSG00000004892.13) protein_coding-promoter-TSS (ENSMUSG00000004892.13) -5699 ENSMUSG00000004892.13 ENSMUSG00000004892 ENSMUST00000194193 Bcan protein_coding Interval_26120 chr11 54522221 54523437 + 0 NA promoter-TSS (ENSMUSG00000037533.20) protein_coding-promoter-TSS (ENSMUSG00000037533.20) 58269 ENSMUSG00000035992.15 ENSMUSG00000035992 ENSMUST00000143650 Fnip1 protein_coding Interval_84241 chr19 8980592 8981904 + 0 NA Intergenic Intergenic -8036 ENSMUSG00000069833.13 ENSMUSG00000069833 ENSMUST00000237033 Ahnak protein_coding Interval_97042 chr2 130740039 130740264 + 0 NA promoter-TSS (ENSMUSG00000027309.18) protein_coding-promoter-TSS (ENSMUSG00000027309.18) -651 ENSMUSG00000027309.18 ENSMUSG00000027309 ENSMUST00000146975 4930402H24Rik protein_coding Interval_26751 chr11 60212451 60213255 + 0 NA intron (ENSMUSG00000020538.15, intron 1 of 1) protein_coding-intron (ENSMUSG00000020538.15, intron 1 of 18) -10229 ENSMUSG00000020538.15 ENSMUSG00000020538 ENSMUST00000136215 Srebf1 protein_coding Interval_168665 chr9 85663257 85663483 + 0 NA Intergenic Intergenic -23803 ENSMUSG00000111386.1 ENSMUSG00000111386 ENSMUST00000213802 Gm48842 lincRNA Interval_79572 chr18 33832203 33832395 + 0 NA intron (ENSMUSG00000024376.7, intron 2 of 7) protein_coding-intron (ENSMUSG00000024376.7, intron 14 of 23) 37135 ENSMUSG00000092819.1 ENSMUSG00000092819 ENSMUST00000175078 Gm23639 snoRNA Interval_126527 chr5 89633520 89633720 + 0 NA Intergenic Intergenic -48296 ENSMUSG00000084500.1 ENSMUSG00000084500 ENSMUST00000122551 Gm25320 misc_RNA Interval_159466 chr8 94898756 94899928 + 0 NA Intergenic Intergenic 18179 ENSMUSG00000063605.5 ENSMUSG00000063605 ENSMUST00000162020 Ccdc102a protein_coding Interval_4011 chr1 66349469 66349875 + 0 NA intron (ENSMUSG00000015222.18, intron 3 of 4) protein_coding-intron (ENSMUSG00000015222.18, intron 2 of 11) -12524 ENSMUSG00000015222.18 ENSMUSG00000015222 ENSMUST00000172486 Map2 protein_coding Interval_89765 chr2 25279068 25280148 + 0 NA intron (ENSMUSG00000026965.12, intron 1 of 2) protein_coding-intron (ENSMUSG00000026965.12, intron 8 of 12) 6130 ENSMUSG00000026965.12 ENSMUSG00000026965 ENSMUST00000125885 Anapc2 protein_coding Interval_40223 chr12 102627079 102628414 + 0 NA intron (ENSMUSG00000057963.9, intron 2 of 4) protein_coding-intron (ENSMUSG00000057963.9, intron 2 of 9) 13188 ENSMUSG00000057963.9 ENSMUSG00000057963 ENSMUST00000178697 Itpk1 protein_coding Interval_151520 chr7 123235213 123235696 + 0 NA promoter-TSS (ENSMUSG00000030769.15) protein_coding-promoter-TSS (ENSMUSG00000030769.15) -29735 ENSMUSG00000030769.15 ENSMUSG00000030769 ENSMUST00000206180 Slc5a11 protein_coding Interval_129402 chr5 119748978 119750022 + 0 NA Intergenic Intergenic -58282 ENSMUSG00000086847.1 ENSMUSG00000086847 ENSMUST00000135385 Tbx3os2 lincRNA Interval_98118 chr2 148348810 148349087 + 0 NA Intergenic Intergenic -46396 ENSMUSG00000037014.4 ENSMUSG00000037014 ENSMUST00000109962 Sstr4 protein_coding Interval_116763 chr4 117148016 117150571 + 0 NA TTS (ENSMUSG00000070834.5) processed_pseudogene-TTS (ENSMUSG00000070834.5) 370 ENSMUSG00000070834.5 ENSMUSG00000070834 ENSMUST00000118674 Gm13015 processed_pseudogene Interval_54860 chr14 75876181 75876948 + 0 NA Intergenic Intergenic 28659 ENSMUSG00000065147.1 ENSMUSG00000065147 ENSMUST00000083213 Snora31 snoRNA Interval_11208 chr1 180175146 180176404 + 0 NA intron (ENSMUSG00000026489.13, intron 1 of 4) protein_coding-intron (ENSMUSG00000026489.13, intron 1 of 4) 17710 ENSMUSG00000026489.13 ENSMUSG00000026489 ENSMUST00000161746 Coq8a protein_coding Interval_103207 chr3 36726144 36726770 + 0 NA Intergenic Intergenic -31404 ENSMUSG00000082548.1 ENSMUSG00000082548 ENSMUST00000118656 Gm12377 processed_pseudogene Interval_92175 chr2 55301215 55302329 + 0 NA Intergenic Intergenic 9707 ENSMUSG00000082301.1 ENSMUSG00000082301 ENSMUST00000117686 Gm14032 processed_pseudogene Interval_147548 chr7 68227147 68227550 + 0 NA exon (ENSMUSG00000005533.10, exon 21 of 21) protein_coding-exon (ENSMUSG00000005533.10, exon 21 of 21) 15510 ENSMUSG00000005533.10 ENSMUSG00000005533 ENSMUST00000208871 Igf1r protein_coding Interval_19500 chr10 100574438 100574674 + 0 NA TTS (ENSMUSG00000019971.10) protein_coding-TTS (ENSMUSG00000019971.10) -2870 ENSMUSG00000112000.1 ENSMUSG00000112000 ENSMUST00000218156 Gm47956 processed_transcript Interval_57642 chr15 13121233 13121592 + 0 NA intron (ENSMUSG00000039385.5, intron 1 of 3) protein_coding-intron (ENSMUSG00000039385.5, intron 1 of 11) 52263 ENSMUSG00000039385.5 ENSMUSG00000039385 ENSMUST00000226917 Cdh6 protein_coding Interval_21773 chr11 4266556 4267494 + 0 NA promoter-TSS (ENSMUSG00000034394.14) protein_coding-promoter-TSS (ENSMUSG00000034394.14) 229 ENSMUSG00000034394.14 ENSMUSG00000034394 ENSMUST00000040750 Lif protein_coding Interval_20890 chr10 121759239 121759766 + 0 NA Intergenic Intergenic 8622 ENSMUSG00000053684.8 ENSMUSG00000053684 ENSMUST00000138630 BC048403 protein_coding Interval_29620 chr11 85508760 85509550 + 0 NA promoter-TSS (ENSMUSG00000059439.15) protein_coding-promoter-TSS (ENSMUSG00000059439.15) 15396 ENSMUSG00000087779.1 ENSMUSG00000087779 ENSMUST00000157154 Gm23765 snRNA Interval_112399 chr4 41046898 41047173 + 0 NA intron (ENSMUSG00000028427.13, intron 1 of 7) protein_coding-intron (ENSMUSG00000028427.13, intron 1 of 7) -3185 ENSMUSG00000088154.1 ENSMUSG00000088154 ENSMUST00000157529 Gm25637 snRNA Interval_24595 chr11 35006774 35007504 + 0 NA Intergenic Intergenic 108122 ENSMUSG00000064577.1 ENSMUSG00000064577 ENSMUST00000082643 Gm25799 snRNA Interval_7908 chr1 134518280 134519330 + 0 NA TTS (ENSMUSG00000096712.1) processed_pseudogene-TTS (ENSMUSG00000096712.1) 724 ENSMUSG00000096712.1 ENSMUSG00000096712 ENSMUST00000179718 Gm15454 processed_pseudogene Interval_174249 chrX 141721445 141722406 + 0 NA exon (ENSMUSG00000054667.7, exon 1 of 2) protein_coding-exon (ENSMUSG00000054667.7, exon 1 of 2) -2913 ENSMUSG00000086426.1 ENSMUSG00000086426 ENSMUST00000139874 Gm15295 antisense Interval_64366 chr16 10867761 10868364 + 0 NA intron (ENSMUSG00000117309.1, intron 40 of 45) protein_coding-intron (ENSMUSG00000037991.9, intron 1 of 5) 32994 ENSMUSG00000037991.9 ENSMUSG00000037991 ENSMUST00000181721 Rmi2 protein_coding Interval_89038 chr2 14875838 14876128 + 0 NA intron (ENSMUSG00000057914.15, intron 2 of 7) protein_coding-intron (ENSMUSG00000057914.15, intron 2 of 7) 1562 ENSMUSG00000057914.15 ENSMUSG00000057914 ENSMUST00000144423 Cacnb2 protein_coding Interval_165959 chr9 54971108 54971299 + 0 NA Intergenic Intergenic -10263 ENSMUSG00000035594.10 ENSMUSG00000035594 ENSMUST00000213960 Chrna5 protein_coding Interval_101806 chr3 9639568 9640719 + 0 NA Intergenic Intergenic -16377 ENSMUSG00000103876.1 ENSMUSG00000103876 ENSMUST00000195844 Gm17806 processed_pseudogene Interval_63537 chr15 101869403 101869607 + 0 NA promoter-TSS (ENSMUSG00000067594.6) protein_coding-promoter-TSS (ENSMUSG00000067594.6) 91 ENSMUSG00000067594.6 ENSMUSG00000067594 ENSMUST00000229995 Krt77 protein_coding Interval_69123 chr16 90800860 90801059 + 0 NA intron (ENSMUSG00000039929.14, intron 4 of 14) protein_coding-intron (ENSMUSG00000039929.14, intron 4 of 38) 9433 ENSMUSG00000039929.14 ENSMUSG00000039929 ENSMUST00000128989 Urb1 protein_coding Interval_53955 chr14 63759770 63760085 + 0 NA intron (ENSMUSG00000035067.9, intron 1 of 2) protein_coding-intron (ENSMUSG00000035067.9, intron 1 of 2) 32738 ENSMUSG00000076049.4 ENSMUSG00000076049 ENSMUST00000102094 Mir598 miRNA Interval_146441 chr7 45922973 45924728 + 0 NA promoter-TSS (ENSMUSG00000040189.18) protein_coding-promoter-TSS (ENSMUSG00000040189.18) 324 ENSMUSG00000110208.1 ENSMUSG00000110208 ENSMUST00000210038 Gm45442 antisense Interval_51549 chr14 30049186 30049900 + 0 NA intron (ENSMUSG00000015968.18, intron 41 of 45) protein_coding-intron (ENSMUSG00000015968.18, intron 44 of 48) 6971 ENSMUSG00000015968.18 ENSMUSG00000015968 ENSMUST00000223985 Cacna1d protein_coding Interval_172863 chrX 52288646 52289214 + 0 NA intron (ENSMUSG00000055653.13, intron 7 of 7) protein_coding-intron (ENSMUSG00000055653.13, intron 7 of 7) -7251 ENSMUSG00000086704.1 ENSMUSG00000086704 ENSMUST00000141697 Gm14582 antisense Interval_78036 chr18 7209630 7209831 + 0 NA intron (ENSMUSG00000061802.6, intron 17 of 20) protein_coding-intron (ENSMUSG00000061802.6, intron 17 of 20) -25657 ENSMUSG00000061802.6 ENSMUSG00000061802 ENSMUST00000234196 Armc4 protein_coding Interval_162725 chr9 8022962 8023330 + 0 NA intron (ENSMUSG00000053070.5, intron 3 of 3) protein_coding-intron (ENSMUSG00000053070.5, intron 6 of 6) 18316 ENSMUSG00000110161.1 ENSMUSG00000110161 ENSMUST00000211167 Gm45494 bidirectional_promoter_lncRNA Interval_150090 chr7 105753635 105754672 + 0 NA exon (ENSMUSG00000036862.15, exon 21 of 21) protein_coding-exon (ENSMUSG00000036862.15, exon 21 of 21) -2061 ENSMUSG00000030894.5 ENSMUSG00000030894 ENSMUST00000211560 Tpp1 protein_coding Interval_138046 chr6 84583218 84585411 + 0 NA exon (ENSMUSG00000063415.12, exon 3 of 7) protein_coding-exon (ENSMUSG00000063415.12, exon 3 of 7) 3366 ENSMUSG00000063415.12 ENSMUSG00000063415 ENSMUST00000204109 Cyp26b1 protein_coding Interval_9276 chr1 155750764 155751236 + 0 NA intron (ENSMUSG00000026468.14, intron 1 of 4) protein_coding-intron (ENSMUSG00000026468.14, intron 1 of 4) 684 ENSMUSG00000026468.14 ENSMUSG00000026468 ENSMUST00000195275 Lhx4 protein_coding Interval_79144 chr18 24955356 24955616 + 0 NA intron (ENSMUSG00000034295.10, intron 5 of 24) protein_coding-intron (ENSMUSG00000034295.10, intron 5 of 26) 194323 ENSMUSG00000088920.1 ENSMUSG00000088920 ENSMUST00000158295 Gm24294 misc_RNA Interval_77150 chr17 86925693 86926010 + 0 NA Intergenic Intergenic -3122 ENSMUSG00000117457.1 ENSMUSG00000117457 ENSMUST00000234807 Gm50011 lincRNA Interval_149044 chr7 92642264 92642793 + 0 NA exon (ENSMUSG00000102555.1, exon 1 of 1) TEC-exon (ENSMUSG00000102555.1, exon 1 of 1) 2579 ENSMUSG00000102555.1 ENSMUSG00000102555 ENSMUST00000192772 6430511E19Rik TEC Interval_57319 chr15 8721817 8723398 + 0 NA Intergenic Intergenic -12198 ENSMUSG00000005360.14 ENSMUSG00000005360 ENSMUST00000126747 Slc1a3 protein_coding Interval_34232 chr11 121474824 121476407 + 0 NA exon (ENSMUSG00000039230.14, exon 7 of 39) protein_coding-exon (ENSMUSG00000039230.14, exon 7 of 39) 40647 ENSMUSG00000025175.12 ENSMUSG00000025175 ENSMUST00000103014 Fn3k protein_coding Interval_120127 chr4 142704627 142705337 + 0 NA intron (ENSMUSG00000110067.2, intron 2 of 2) protein_coding-intron (ENSMUSG00000110067.2, intron 2 of 2) -85826 ENSMUSG00000103678.1 ENSMUSG00000103678 ENSMUST00000193751 Gm37624 TEC Interval_172629 chrX 38564081 38565556 + 0 NA promoter-TSS (ENSMUSG00000031095.15) protein_coding-promoter-TSS (ENSMUSG00000031095.15) -156 ENSMUSG00000031095.15 ENSMUSG00000031095 ENSMUST00000050083 Cul4b protein_coding Interval_25602 chr11 50161310 50162189 + 0 NA promoter-TSS (ENSMUSG00000036644.15) protein_coding-promoter-TSS (ENSMUSG00000036644.15) -12695 ENSMUSG00000020381.10 ENSMUSG00000020381 ENSMUST00000123164 Mrnip protein_coding Interval_74661 chr17 54684233 54684425 + 0 NA Intergenic Intergenic 32393 ENSMUSG00000089514.1 ENSMUSG00000089514 ENSMUST00000158889 Gm26291 snoRNA Interval_99534 chr2 163011119 163011865 + 0 NA intron (ENSMUSG00000017868.16, intron 12 of 12) protein_coding-intron (ENSMUSG00000017868.16, intron 13 of 13) -10951 ENSMUSG00000017858.12 ENSMUSG00000017858 ENSMUST00000152201 Ift52 protein_coding Interval_3822 chr1 63265985 63266292 + 0 NA TTS (ENSMUSG00000087561.7) lincRNA-TTS (ENSMUSG00000087561.7) 6977 ENSMUSG00000087561.7 ENSMUSG00000087561 ENSMUST00000151616 Gm11608 lincRNA Interval_96576 chr2 125858359 125859458 + 0 NA promoter-TSS (ENSMUSG00000027207.15) protein_coding-promoter-TSS (ENSMUSG00000027207.15) 155 ENSMUSG00000027206.13 ENSMUSG00000027206 ENSMUST00000152683 Cops2 protein_coding Interval_134604 chr6 29886306 29886541 + 0 NA intron (ENSMUSG00000029772.17, intron 6 of 14) protein_coding-intron (ENSMUSG00000029772.17, intron 8 of 16) 9744 ENSMUSG00000029772.17 ENSMUSG00000029772 ENSMUST00000128837 Ahcyl2 protein_coding Interval_150165 chr7 107535064 107537010 + 0 NA intron (ENSMUSG00000062542.11, intron 2 of 2) protein_coding-intron (ENSMUSG00000062542.11, intron 6 of 6) -31729 ENSMUSG00000051041.8 ENSMUSG00000051041 ENSMUST00000239087 Olfml1 protein_coding Interval_167055 chr9 64933860 64934730 + 0 NA intron (ENSMUSG00000034452.7, intron 4 of 9) protein_coding-intron (ENSMUSG00000034452.7, intron 4 of 9) 17312 ENSMUSG00000034452.7 ENSMUSG00000034452 ENSMUST00000037798 Slc24a1 protein_coding Interval_151313 chr7 120930931 120931839 + 0 NA intron (ENSMUSG00000030880.14, intron 7 of 19) protein_coding-intron (ENSMUSG00000030880.14, intron 8 of 20) -3445 ENSMUSG00000030880.14 ENSMUSG00000030880 ENSMUST00000209014 Polr3e protein_coding Interval_1693 chr1 31290967 31291349 + 0 NA Intergenic Intergenic 4213 ENSMUSG00000094215.2 ENSMUSG00000094215 ENSMUST00000178167 Gm6489 processed_pseudogene Interval_51213 chr14 25065787 25066654 + 0 NA TTS (ENSMUSG00000114924.1) lincRNA-TTS (ENSMUSG00000114924.1) 8224 ENSMUSG00000114924.1 ENSMUSG00000114924 ENSMUST00000224815 Gm38408 lincRNA Interval_110601 chr4 4549469 4551156 + 0 NA Intergenic Intergenic -21593 ENSMUSG00000085155.3 ENSMUSG00000085155 ENSMUST00000136880 Gm11780 processed_pseudogene Interval_45188 chr13 53088699 53088902 + 0 NA Intergenic Intergenic 59882 ENSMUSG00000112952.1 ENSMUSG00000112952 ENSMUST00000222184 Gm48336 lincRNA Interval_33604 chr11 117457002 117457338 + 0 NA Intergenic Intergenic 25427 ENSMUSG00000110653.1 ENSMUSG00000110653 ENSMUST00000212879 Gm34418 lincRNA Interval_98388 chr2 152001107 152001321 + 0 NA intron (ENSMUSG00000027463.14, intron 1 of 4) protein_coding-intron (ENSMUSG00000027463.14, intron 1 of 4) 1349 ENSMUSG00000027463.14 ENSMUSG00000027463 ENSMUST00000109858 Slc52a3 protein_coding Interval_126083 chr5 77273237 77273653 + 0 NA TTS (ENSMUSG00000093061.1) miRNA-TTS (ENSMUSG00000093061.1) 688 ENSMUSG00000093061.1 ENSMUSG00000093061 ENSMUST00000175320 Mir5098 miRNA Interval_59791 chr15 59301641 59302654 + 0 NA Intergenic Intergenic -8706 ENSMUSG00000098528.1 ENSMUSG00000098528 ENSMUST00000184208 Zfp572 transcribed_processed_pseudogene Interval_12437 chr1 193465365 193467002 + 0 NA Intergenic Intergenic -9107 ENSMUSG00000102648.1 ENSMUSG00000102648 ENSMUST00000191762 Gm38022 processed_pseudogene Interval_47907 chr13 94306787 94307134 + 0 NA Intergenic Intergenic -7101 ENSMUSG00000114056.1 ENSMUSG00000114056 ENSMUST00000220897 Gm5668 processed_pseudogene Interval_21270 chr10 127576434 127576811 + 0 NA exon (ENSMUSG00000040249.15, exon 24 of 89) protein_coding-exon (ENSMUSG00000040249.15, exon 24 of 89) -19926 ENSMUSG00000086499.1 ENSMUSG00000086499 ENSMUST00000124182 Gm16217 antisense Interval_103165 chr3 36155402 36155587 + 0 NA intron (ENSMUSG00000033883.11, intron 1 of 2) protein_coding-intron (ENSMUSG00000033883.11, intron 1 of 3) 4332 ENSMUSG00000033883.11 ENSMUSG00000033883 ENSMUST00000165956 Zfp267 protein_coding Interval_140189 chr6 115123047 115123855 + 0 NA Intergenic Intergenic 11384 ENSMUSG00000097486.2 ENSMUSG00000097486 ENSMUST00000181883 Gm17733 bidirectional_promoter_lncRNA Interval_10406 chr1 170513724 170514632 + 0 NA intron (ENSMUSG00000038473.14, intron 2 of 7) protein_coding-intron (ENSMUSG00000038473.14, intron 2 of 3) -116743 ENSMUSG00000102193.1 ENSMUSG00000102193 ENSMUST00000194441 Gm7299 processed_pseudogene Interval_41044 chr12 110784575 110785045 + 0 NA intron (ENSMUSG00000037957.14, intron 4 of 4) protein_coding-intron (ENSMUSG00000037957.14, intron 2 of 2) 46601 ENSMUSG00000037957.14 ENSMUSG00000037957 ENSMUST00000194118 Wdr20 protein_coding Interval_117233 chr4 120814178 120816155 + 0 NA intron (ENSMUSG00000032897.17, intron 1 of 9) protein_coding-intron (ENSMUSG00000032897.17, intron 1 of 9) -22322 ENSMUSG00000096876.1 ENSMUSG00000096876 ENSMUST00000179354 Gm23936 miRNA Interval_5746 chr1 91405596 91406467 + 0 NA promoter-TSS (ENSMUSG00000100253.1) lincRNA-promoter-TSS (ENSMUSG00000100253.1) -2 ENSMUSG00000100253.1 ENSMUSG00000100253 ENSMUST00000188956 1700020N18Rik lincRNA Interval_99537 chr2 163031335 163032783 + 0 NA TTS (ENSMUSG00000017858.12) protein_coding-TTS (ENSMUSG00000017858.12) 9616 ENSMUSG00000017858.12 ENSMUSG00000017858 ENSMUST00000152201 Ift52 protein_coding Interval_133427 chr6 4974412 4974738 + 0 NA intron (ENSMUSG00000032827.15, intron 1 of 17) protein_coding-intron (ENSMUSG00000032827.15, intron 2 of 15) 15592 ENSMUSG00000097396.1 ENSMUSG00000097396 ENSMUST00000180645 Gm26556 TEC Interval_18129 chr10 82851320 82851559 + 0 NA exon (ENSMUSG00000112889.1, exon 1 of 1) TEC-exon (ENSMUSG00000112889.1, exon 1 of 1) 1208 ENSMUSG00000112889.1 ENSMUSG00000112889 ENSMUST00000220118 Gm47073 TEC Interval_43585 chr13 33845092 33845297 + 0 NA Intergenic Intergenic -1786 ENSMUSG00000069248.11 ENSMUSG00000069248 ENSMUST00000145221 Serpinb6e protein_coding Interval_87335 chr19 47789001 47790877 + 0 NA intron (ENSMUSG00000044948.17, intron 12 of 37) protein_coding-intron (ENSMUSG00000044948.17, intron 12 of 13) -26359 ENSMUSG00000044948.17 ENSMUSG00000044948 ENSMUST00000159204 Cfap43 protein_coding Interval_56121 chr14 106045304 106045514 + 0 NA Intergenic Intergenic 48073 ENSMUSG00000115800.1 ENSMUSG00000115800 ENSMUST00000226185 Frg2f4 processed_pseudogene Interval_117805 chr4 126321088 126322173 + 0 NA promoter-TSS (ENSMUSG00000042558.16) protein_coding-promoter-TSS (ENSMUSG00000042558.16) -261 ENSMUSG00000042558.16 ENSMUSG00000042558 ENSMUST00000133068 Adprhl2 protein_coding Interval_9052 chr1 153300762 153301550 + 0 NA intron (ENSMUSG00000026478.14, intron 1 of 27) protein_coding-intron (ENSMUSG00000026478.14, intron 1 of 27) -4276 ENSMUSG00000079138.3 ENSMUSG00000079138 ENSMUST00000110797 Gm8818 processed_pseudogene Interval_42820 chr13 20038624 20038950 + 0 NA Intergenic Intergenic -42983 ENSMUSG00000050243.6 ENSMUSG00000050243 ENSMUST00000091762 Gm5446 processed_pseudogene Interval_126829 chr5 93280029 93280689 + 0 NA Intergenic Intergenic 12758 ENSMUSG00000029385.14 ENSMUSG00000029385 ENSMUST00000149329 Ccng2 protein_coding Interval_23619 chr11 23863846 23864320 + 0 NA intron (ENSMUSG00000020273.13, intron 21 of 21) protein_coding-intron (ENSMUSG00000020273.13, intron 21 of 21) 27821 ENSMUSG00000020273.13 ENSMUSG00000020273 ENSMUST00000102863 Papolg protein_coding Interval_83791 chr19 4731781 4732781 + 0 NA intron (ENSMUSG00000067889.6, intron 11 of 36) protein_coding-intron (ENSMUSG00000067889.6, intron 11 of 36) 11202 ENSMUSG00000067889.6 ENSMUSG00000067889 ENSMUST00000238162 Sptbn2 protein_coding Interval_56373 chr14 118203161 118203533 + 0 NA Intergenic Intergenic -8951 ENSMUSG00000115774.1 ENSMUSG00000115774 ENSMUST00000227956 4933431J24Rik lincRNA Interval_132013 chr5 142281661 142282246 + 0 NA Intergenic Intergenic -1153 ENSMUSG00000097947.1 ENSMUSG00000097947 ENSMUST00000182990 Gm26970 processed_pseudogene Interval_152770 chr7 137410144 137411385 + 0 NA promoter-TSS (ENSMUSG00000040139.14) protein_coding-promoter-TSS (ENSMUSG00000040139.14) -8 ENSMUSG00000040139.14 ENSMUSG00000040139 ENSMUST00000120340 9430038I01Rik protein_coding Interval_168365 chr9 79714483 79715158 + 0 NA TTS (ENSMUSG00000032332.17) protein_coding-TTS (ENSMUSG00000032332.17) 3900 ENSMUSG00000032332.17 ENSMUSG00000032332 ENSMUST00000141667 Col12a1 protein_coding Interval_74277 chr17 47851570 47852626 + 0 NA Intergenic Intergenic 3264 ENSMUSG00000064748.1 ENSMUSG00000064748 ENSMUST00000082814 n-R5s28 rRNA Interval_39432 chr12 87363251 87363585 + 0 NA intron (ENSMUSG00000021036.10, intron 2 of 4) protein_coding-intron (ENSMUSG00000021036.10, intron 2 of 11) -8574 ENSMUSG00000113648.1 ENSMUSG00000113648 ENSMUST00000221879 Gm48806 processed_pseudogene Interval_674 chr1 9784269 9784770 + 0 NA intron (ENSMUSG00000097893.8, intron 1 of 2) antisense-intron (ENSMUSG00000097893.8, intron 5 of 6) 18034 ENSMUSG00000046334.4 ENSMUSG00000046334 ENSMUST00000063059 Gm6195 processed_pseudogene Interval_94902 chr2 101506984 101507353 + 0 NA Intergenic Intergenic -63456 ENSMUSG00000093614.1 ENSMUSG00000093614 ENSMUST00000177431 Gm20693 processed_pseudogene Interval_99579 chr2 163338549 163340869 + 0 NA exon (ENSMUSG00000017817.11, exon 4 of 6) protein_coding-exon (ENSMUSG00000017817.11, exon 4 of 6) 58284 ENSMUSG00000017817.11 ENSMUSG00000017817 ENSMUST00000109425 Jph2 protein_coding Interval_52794 chr14 50360341 50360619 + 0 NA promoter-TSS (ENSMUSG00000051969.7) protein_coding-promoter-TSS (ENSMUSG00000051969.7) 2566 ENSMUSG00000051969.7 ENSMUSG00000051969 ENSMUST00000063570 Tlr11 protein_coding Interval_31799 chr11 102948605 102948957 + 0 NA Intergenic Intergenic -2093 ENSMUSG00000045532.5 ENSMUSG00000045532 ENSMUST00000057849 C1ql1 protein_coding Interval_135255 chr6 37880714 37881247 + 0 NA intron (ENSMUSG00000029833.17, intron 2 of 7) protein_coding-intron (ENSMUSG00000029833.17, intron 1 of 18) 10169 ENSMUSG00000029833.17 ENSMUSG00000029833 ENSMUST00000135387 Trim24 protein_coding Interval_155329 chr8 31388732 31389013 + 0 NA Intergenic Intergenic -7556 ENSMUSG00000109705.1 ENSMUSG00000109705 ENSMUST00000209705 Gm19096 processed_pseudogene Interval_6514 chr1 113949723 113950085 + 0 NA intron (ENSMUSG00000097648.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000097648.1, intron 1 of 2) 14230 ENSMUSG00000097648.1 ENSMUSG00000097648 ENSMUST00000180837 9330185C12Rik lincRNA Interval_8803 chr1 151280359 151280682 + 0 NA Intergenic Intergenic -19606 ENSMUSG00000088498.1 ENSMUSG00000088498 ENSMUST00000157873 Gm24402 snRNA Interval_161067 chr8 117281917 117282569 + 0 NA intron (ENSMUSG00000034390.16, intron 1 of 10) protein_coding-intron (ENSMUSG00000034390.16, intron 1 of 20) 124106 ENSMUSG00000052557.11 ENSMUSG00000052557 ENSMUST00000162997 Gan protein_coding Interval_141033 chr6 124492690 124494123 + 0 NA intron (ENSMUSG00000038527.9, intron 1 of 5) protein_coding-intron (ENSMUSG00000038527.9, intron 1 of 5) 293 ENSMUSG00000038527.9 ENSMUSG00000038527 ENSMUST00000049124 C1rl protein_coding Interval_73013 chr17 34135237 34135890 + 0 NA promoter-TSS (ENSMUSG00000037649.10) protein_coding-promoter-TSS (ENSMUSG00000037649.10) -1949 ENSMUSG00000092246.2 ENSMUSG00000092246 ENSMUST00000173706 Gm20493 processed_pseudogene Interval_73203 chr17 35554987 35557653 + 0 NA exon (ENSMUSG00000039518.7, exon 2 of 2) protein_coding-exon (ENSMUSG00000039518.7, exon 2 of 2) 4192 ENSMUSG00000039518.7 ENSMUSG00000039518 ENSMUST00000044804 Cdsn protein_coding Interval_5265 chr1 87082832 87083150 + 0 NA intron (ENSMUSG00000101625.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000101625.1, intron 1 of 1) 2820 ENSMUSG00000101625.1 ENSMUSG00000101625 ENSMUST00000186823 Gm29371 lincRNA Interval_86087 chr19 36477502 36478497 + 0 NA Intergenic Intergenic -26842 ENSMUSG00000114235.1 ENSMUSG00000114235 ENSMUST00000224716 F530104D19Rik antisense Interval_49716 chr13 114220711 114220961 + 0 NA Intergenic Intergenic -6275 ENSMUSG00000104314.1 ENSMUSG00000104314 ENSMUST00000195644 Gm37907 TEC Interval_133746 chr6 11079098 11079455 + 0 NA Intergenic Intergenic -104898 ENSMUSG00000107948.2 ENSMUSG00000107948 ENSMUST00000205141 AA545190 lincRNA Interval_58636 chr15 36712920 36713154 + 0 NA Intergenic Intergenic -10610 ENSMUSG00000115103.1 ENSMUSG00000115103 ENSMUST00000226969 Gm49263 lincRNA Interval_26374 chr11 57470061 57470316 + 0 NA Intergenic Intergenic 21081 ENSMUSG00000082476.1 ENSMUSG00000082476 ENSMUST00000118824 Gm12242 processed_pseudogene Interval_139132 chr6 95707337 95707746 + 0 NA intron (ENSMUSG00000061838.7, intron 1 of 10) protein_coding-intron (ENSMUSG00000061838.7, intron 1 of 1) -50073 ENSMUSG00000061838.7 ENSMUSG00000061838 ENSMUST00000203109 Suclg2 protein_coding Interval_150209 chr7 108062456 108062642 + 0 NA Intergenic Intergenic 4797 ENSMUSG00000063120.5 ENSMUSG00000063120 ENSMUST00000071658 Olfr480 protein_coding Interval_114485 chr4 80928088 80928756 + 0 NA intron (ENSMUSG00000048706.3, intron 1 of 1) protein_coding-intron (ENSMUSG00000048706.3, intron 1 of 1) 17776 ENSMUSG00000048706.3 ENSMUSG00000048706 ENSMUST00000055922 Lurap1l protein_coding Interval_166913 chr9 63904341 63904985 + 0 NA Intergenic Intergenic 6398 ENSMUSG00000110768.1 ENSMUSG00000110768 ENSMUST00000215935 Gm18541 processed_pseudogene Interval_31212 chr11 98927787 98928727 + 0 NA intron (ENSMUSG00000037992.16, intron 1 of 8) protein_coding-intron (ENSMUSG00000037992.16, intron 1 of 8) 7791 ENSMUSG00000017499.15 ENSMUSG00000017499 ENSMUST00000135862 Cdc6 protein_coding Interval_174217 chrX 140003062 140003782 + 0 NA Intergenic Intergenic -4856 ENSMUSG00000031433.15 ENSMUSG00000031433 ENSMUST00000148703 Rbm41 protein_coding Interval_61430 chr15 81561060 81562925 + 0 NA Intergenic Intergenic 23036 ENSMUSG00000103520.1 ENSMUSG00000103520 ENSMUST00000192082 1110025M09Rik TEC Interval_88721 chr2 9989553 9989857 + 0 NA intron (ENSMUSG00000025782.12, intron 2 of 6) protein_coding-intron (ENSMUSG00000025782.12, intron 2 of 6) -47954 ENSMUSG00000025782.12 ENSMUSG00000025782 ENSMUST00000114907 Taf3 protein_coding Interval_78028 chr18 7029140 7029309 + 0 NA Intergenic Intergenic 14911 ENSMUSG00000117381.1 ENSMUSG00000117381 ENSMUST00000235104 Gm10350 processed_pseudogene Interval_116119 chr4 107905955 107907371 + 0 NA TTS (ENSMUSG00000028607.16) protein_coding-TTS (ENSMUSG00000028607.16) 6103 ENSMUSG00000028607.16 ENSMUSG00000028607 ENSMUST00000131644 Cpt2 protein_coding Interval_171275 chr9 115917609 115917988 + 0 NA intron (ENSMUSG00000056880.12, intron 1 of 14) protein_coding-intron (ENSMUSG00000056880.12, intron 1 of 14) -19344 ENSMUSG00000056880.12 ENSMUSG00000056880 ENSMUST00000121770 Gadl1 protein_coding Interval_80359 chr18 40021812 40022165 + 0 NA Intergenic Intergenic 87745 ENSMUSG00000118042.1 ENSMUSG00000118042 ENSMUST00000235427 Gm50395 lincRNA Interval_146011 chr7 43102677 43103252 + 0 NA Intergenic Intergenic 3245 ENSMUSG00000071952.3 ENSMUSG00000071952 ENSMUST00000087694 Gm10351 TEC Interval_17039 chr10 70741785 70742662 + 0 NA Intergenic Intergenic -3379 ENSMUSG00000112607.1 ENSMUSG00000112607 ENSMUST00000219486 Gm33979 lincRNA Interval_50767 chr14 19347536 19348029 + 0 NA Intergenic Intergenic 3865 ENSMUSG00000114252.1 ENSMUSG00000114252 ENSMUST00000223777 Gm5630 processed_pseudogene Interval_57009 chr15 4026077 4028006 + 0 NA promoter-TSS (ENSMUSG00000087221.3) processed_transcript-promoter-TSS (ENSMUSG00000087221.3) 357 ENSMUSG00000022186.14 ENSMUSG00000022186 ENSMUST00000133130 Oxct1 protein_coding Interval_6940 chr1 121095411 121095775 + 0 NA intron (ENSMUSG00000097881.7, intron 1 of 2) lincRNA-intron (ENSMUSG00000097881.7, intron 1 of 4) 8122 ENSMUSG00000097881.7 ENSMUSG00000097881 ENSMUST00000181183 Celrr lincRNA Interval_118846 chr4 134023602 134024149 + 0 NA Intergenic Intergenic -5493 ENSMUSG00000050966.9 ENSMUSG00000050966 ENSMUST00000176897 Lin28a protein_coding Interval_159242 chr8 92077354 92078102 + 0 NA Intergenic Intergenic 37811 ENSMUSG00000065636.1 ENSMUSG00000065636 ENSMUST00000083702 Gm24254 snRNA Interval_134823 chr6 31885075 31885442 + 0 NA intron (ENSMUSG00000087379.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000087379.1, intron 1 of 2) 98583 ENSMUSG00000087379.1 ENSMUSG00000087379 ENSMUST00000153328 Gm13849 lincRNA Interval_169203 chr9 95479740 95480296 + 0 NA exon (ENSMUSG00000032407.14, exon 2 of 2) protein_coding-exon (ENSMUSG00000032407.14, exon 2 of 2) 31867 ENSMUSG00000032407.14 ENSMUSG00000032407 ENSMUST00000188017 U2surp protein_coding Interval_37101 chr12 58225288 58225810 + 0 NA Intergenic Intergenic 13777 ENSMUSG00000035431.4 ENSMUSG00000035431 ENSMUST00000044299 Sstr1 protein_coding Interval_130100 chr5 124262583 124263561 + 0 NA promoter-TSS (ENSMUSG00000038126.17) protein_coding-promoter-TSS (ENSMUSG00000038126.17) 5309 ENSMUSG00000087784.1 ENSMUSG00000087784 ENSMUST00000157159 Gm23171 misc_RNA Interval_44772 chr13 48497413 48498365 + 0 NA exon (ENSMUSG00000050954.15, exon 4 of 4) protein_coding-exon (ENSMUSG00000050954.15, exon 4 of 4) 15505 ENSMUSG00000050954.15 ENSMUSG00000050954 ENSMUST00000177474 Zfp169 protein_coding Interval_57330 chr15 8831633 8832860 + 0 NA Intergenic Intergenic -82238 ENSMUSG00000107028.1 ENSMUSG00000107028 ENSMUST00000202103 Gm5043 processed_pseudogene Interval_29381 chr11 83540783 83541049 + 0 NA Intergenic Intergenic -10403 ENSMUSG00000035042.2 ENSMUSG00000035042 ENSMUST00000125015 Ccl5 protein_coding Interval_5916 chr1 93211578 93212007 + 0 NA intron (ENSMUSG00000084989.3, intron 21 of 31) protein_coding-intron (ENSMUSG00000084989.3, intron 21 of 31) -24059 ENSMUSG00000047793.13 ENSMUSG00000047793 ENSMUST00000165883 Sned1 protein_coding Interval_124072 chr5 38054246 38054732 + 0 NA intron (ENSMUSG00000029125.14, intron 1 of 3) protein_coding-intron (ENSMUSG00000029125.14, intron 1 of 10) 15207 ENSMUSG00000029125.14 ENSMUSG00000029125 ENSMUST00000141286 Stx18 protein_coding Interval_173780 chrX 104032902 104033451 + 0 NA Intergenic Intergenic -31697 ENSMUSG00000064876.1 ENSMUSG00000064876 ENSMUST00000082942 Gm23378 snRNA Interval_108738 chr3 130873265 130873704 + 0 NA promoter-TSS (ENSMUSG00000105769.1) lincRNA-promoter-TSS (ENSMUSG00000105769.1) -589 ENSMUSG00000105769.1 ENSMUSG00000105769 ENSMUST00000198737 Gm43351 lincRNA Interval_101697 chr3 8997928 8998153 + 0 NA intron (ENSMUSG00000027506.15, intron 1 of 3) protein_coding-intron (ENSMUSG00000027506.15, intron 1 of 6) 6438 ENSMUSG00000027506.15 ENSMUSG00000027506 ENSMUST00000155450 Tpd52 protein_coding Interval_167240 chr9 66599394 66600091 + 0 NA Intergenic Intergenic -6736 ENSMUSG00000032376.12 ENSMUSG00000032376 ENSMUST00000139952 Usp3 protein_coding Interval_43077 chr13 23683196 23685053 + 0 NA promoter-TSS (ENSMUSG00000018102.5) protein_coding-promoter-TSS (ENSMUSG00000018102.5) -75 ENSMUSG00000018102.5 ENSMUSG00000018102 ENSMUST00000018246 H2bc4 protein_coding Interval_97127 chr2 131485093 131485266 + 0 NA Intergenic Intergenic -6764 ENSMUSG00000027333.18 ENSMUSG00000027333 ENSMUST00000151143 Smox protein_coding Interval_160424 chr8 109413736 109416081 + 0 NA Intergenic Intergenic 10836 ENSMUSG00000092821.1 ENSMUSG00000092821 ENSMUST00000175080 Gm23163 miRNA Interval_51190 chr14 24589588 24589850 + 0 NA Intergenic Intergenic 27748 ENSMUSG00000048628.5 ENSMUSG00000048628 ENSMUST00000062438 4930542C16Rik lincRNA Interval_160389 chr8 108898849 108899748 + 0 NA intron (ENSMUSG00000038872.10, intron 10 of 15) protein_coding-intron (ENSMUSG00000038872.10, intron 4 of 9) 22576 ENSMUSG00000093697.1 ENSMUSG00000093697 ENSMUST00000175846 Gm20686 antisense Interval_149685 chr7 100637364 100637903 + 0 NA intron (ENSMUSG00000030704.14, intron 2 of 2) protein_coding-intron (ENSMUSG00000030704.14, intron 7 of 7) 3285 ENSMUSG00000030704.14 ENSMUSG00000030704 ENSMUST00000123960 Rab6a protein_coding Interval_145261 chr7 31028572 31028922 + 0 NA Intergenic Intergenic 9191 ENSMUSG00000009687.14 ENSMUSG00000009687 ENSMUST00000161259 Fxyd5 protein_coding Interval_60915 chr15 77826915 77828653 + 0 NA intron (ENSMUSG00000022443.17, intron 1 of 2) protein_coding-intron (ENSMUSG00000022443.17, intron 1 of 40) 12972 ENSMUSG00000084497.1 ENSMUSG00000084497 ENSMUST00000122548 Gm22107 snRNA Interval_79547 chr18 33509729 33510219 + 0 NA Intergenic Intergenic 45811 ENSMUSG00000118292.1 ENSMUSG00000118292 ENSMUST00000237662 Gm10549 lincRNA Interval_128733 chr5 114984748 114985755 + 0 NA exon (ENSMUSG00000086054.2, exon 5 of 6) antisense-exon (ENSMUSG00000086054.2, exon 5 of 6) 9795 ENSMUSG00000106838.1 ENSMUSG00000106838 ENSMUST00000202592 1810017P11Rik TEC Interval_92553 chr2 60584165 60584860 + 0 NA Intergenic Intergenic 6975 ENSMUSG00000084115.1 ENSMUSG00000084115 ENSMUST00000117428 Gm13566 processed_pseudogene Interval_154600 chr8 21990703 21990945 + 0 NA Intergenic Intergenic 21049 ENSMUSG00000017049.4 ENSMUSG00000017049 ENSMUST00000017193 Ccdc70 protein_coding Interval_155672 chr8 35971102 35971829 + 0 NA Intergenic Intergenic 6113 ENSMUSG00000080592.1 ENSMUSG00000080592 ENSMUST00000116942 Gm22030 miRNA Interval_31365 chr11 100277761 100278519 + 0 NA TTS (ENSMUSG00000086163.1) antisense-TTS (ENSMUSG00000086163.1) -12162 ENSMUSG00000053654.7 ENSMUSG00000053654 ENSMUST00000017270 Krt42 protein_coding Interval_94753 chr2 94013614 94013831 + 0 NA Intergenic Intergenic -2970 ENSMUSG00000040174.14 ENSMUSG00000040174 ENSMUST00000130289 Alkbh3 protein_coding Interval_56730 chr14 121713310 121714532 + 0 NA intron (ENSMUSG00000025558.19, intron 1 of 52) protein_coding-intron (ENSMUSG00000025558.19, intron 1 of 52) 24940 ENSMUSG00000025558.19 ENSMUSG00000025558 ENSMUST00000238406 Dock9 protein_coding Interval_79538 chr18 33161435 33161636 + 0 NA intron (ENSMUSG00000038128.7, intron 10 of 14) protein_coding-intron (ENSMUSG00000038128.7, intron 7 of 10) 52286 ENSMUSG00000024378.9 ENSMUSG00000024378 ENSMUST00000141617 Stard4 protein_coding Interval_15913 chr10 59221121 59222925 + 0 NA promoter-TSS (ENSMUSG00000019917.10) protein_coding-promoter-TSS (ENSMUSG00000019917.10) 70 ENSMUSG00000098188.1 ENSMUSG00000098188 ENSMUST00000182161 Sowahc protein_coding Interval_126575 chr5 90356310 90356544 + 0 NA intron (ENSMUSG00000055204.15, intron 1 of 26) protein_coding-intron (ENSMUSG00000055204.15, intron 1 of 33) 9758 ENSMUSG00000055204.15 ENSMUSG00000055204 ENSMUST00000202226 Ankrd17 protein_coding Interval_110556 chr4 3856606 3857748 + 0 NA TTS (ENSMUSG00000077293.1) snoRNA-TTS (ENSMUSG00000077293.1) 436 ENSMUSG00000077293.1 ENSMUSG00000077293 ENSMUST00000104105 Gm24125 snoRNA Interval_142510 chr6 142977341 142977571 + 0 NA Intergenic Intergenic 5704 ENSMUSG00000108085.1 ENSMUSG00000108085 ENSMUST00000205115 A930014E10Rik lincRNA Interval_84855 chr19 17551060 17551482 + 0 NA intron (ENSMUSG00000024713.16, intron 20 of 37) protein_coding-intron (ENSMUSG00000024713.16, intron 20 of 37) -141492 ENSMUSG00000118270.1 ENSMUSG00000118270 ENSMUST00000237894 Gm17819 processed_pseudogene Interval_141959 chr6 136010174 136010800 + 0 NA intron (ENSMUSG00000030209.14, intron 4 of 5) protein_coding-intron (ENSMUSG00000030209.14, intron 3 of 13) 134982 ENSMUSG00000086614.2 ENSMUSG00000086614 ENSMUST00000155455 Gm14330 antisense Interval_8828 chr1 151416708 151417376 + 0 NA exon (ENSMUSG00000052748.14, exon 2 of 2) protein_coding-exon (ENSMUSG00000052748.14, exon 2 of 2) -11664 ENSMUSG00000053286.11 ENSMUSG00000053286 ENSMUST00000189655 Trmt1l protein_coding Interval_12136 chr1 189979668 189980439 + 0 NA Intergenic Intergenic -57800 ENSMUSG00000026603.13 ENSMUSG00000026603 ENSMUST00000144452 Smyd2 protein_coding Interval_102805 chr3 31197091 31197545 + 0 NA Intergenic Intergenic 47398 ENSMUSG00000037625.7 ENSMUSG00000037625 ENSMUST00000046174 Cldn11 protein_coding Interval_74183 chr17 46940415 46941308 + 0 NA TTS (ENSMUSG00000023977.15) protein_coding-TTS (ENSMUSG00000023977.15) 11294 ENSMUSG00000023977.15 ENSMUSG00000023977 ENSMUST00000225599 Ubr2 protein_coding Interval_47018 chr13 74389941 74391099 + 0 NA intron (ENSMUSG00000069184.4, intron 1 of 4) protein_coding-intron (ENSMUSG00000069184.4, intron 1 of 4) 316 ENSMUSG00000069184.4 ENSMUSG00000069184 ENSMUST00000091481 Zfp72 protein_coding Interval_3175 chr1 54458896 54460151 + 0 NA Intergenic Intergenic -2760 ENSMUSG00000109809.1 ENSMUSG00000109809 ENSMUST00000210156 Gm34066 protein_coding Interval_59431 chr15 53107706 53108237 + 0 NA promoter-TSS (ENSMUSG00000061731.9) protein_coding-promoter-TSS (ENSMUSG00000061731.9) -103 ENSMUSG00000061731.9 ENSMUSG00000061731 ENSMUST00000140798 Ext1 protein_coding Interval_55533 chr14 91084508 91084692 + 0 NA Intergenic Intergenic 23692 ENSMUSG00000088746.1 ENSMUSG00000088746 ENSMUST00000158121 Gm23225 snoRNA Interval_168447 chr9 80588213 80589245 + 0 NA intron (ENSMUSG00000111510.2, intron 1 of 1) lincRNA-intron (ENSMUSG00000111510.2, intron 1 of 1) 12368 ENSMUSG00000111510.2 ENSMUSG00000111510 ENSMUST00000214415 Gm48387 lincRNA Interval_4107 chr1 68504895 68505126 + 0 NA intron (ENSMUSG00000062209.15, intron 3 of 18) protein_coding-intron (ENSMUSG00000062209.15, intron 3 of 27) 88676 ENSMUSG00000103307.1 ENSMUSG00000103307 ENSMUST00000195836 Gm19335 TEC Interval_35765 chr12 29095481 29096745 + 0 NA Intergenic Intergenic 10624 ENSMUSG00000113544.1 ENSMUSG00000113544 ENSMUST00000222186 4833405L11Rik lincRNA Interval_15862 chr10 58496609 58498596 + 0 NA promoter-TSS (ENSMUSG00000038010.9) protein_coding-promoter-TSS (ENSMUSG00000038010.9) -603 ENSMUSG00000038010.9 ENSMUSG00000038010 ENSMUST00000217992 Ccdc138 protein_coding Interval_140666 chr6 120396206 120396923 + 0 NA intron (ENSMUSG00000030180.15, intron 12 of 20) protein_coding-intron (ENSMUSG00000030180.15, intron 12 of 27) -15425 ENSMUSG00000084454.1 ENSMUSG00000084454 ENSMUST00000122505 Gm24592 snRNA Interval_41939 chr13 4839267 4840087 + 0 NA Intergenic Intergenic 68026 ENSMUSG00000053499.4 ENSMUSG00000053499 ENSMUST00000065956 Gm5444 lincRNA Interval_139550 chr6 100921870 100923052 + 0 NA TTS (ENSMUSG00000108074.1) TEC-TTS (ENSMUSG00000108074.1) 695 ENSMUSG00000108074.1 ENSMUSG00000108074 ENSMUST00000205099 4930595O18Rik TEC Interval_93625 chr2 75092379 75092586 + 0 NA Intergenic Intergenic 45316 ENSMUSG00000087333.1 ENSMUSG00000087333 ENSMUST00000143898 Gm13652 lincRNA Interval_116716 chr4 116807101 116808270 + 0 NA promoter-TSS (ENSMUSG00000028688.13) protein_coding-promoter-TSS (ENSMUSG00000028688.13) -2493 ENSMUSG00000028688.13 ENSMUSG00000028688 ENSMUST00000146246 Toe1 protein_coding Interval_118922 chr4 134467462 134469478 + 0 NA promoter-TSS (ENSMUSG00000028832.11) protein_coding-promoter-TSS (ENSMUSG00000028832.11) 71 ENSMUSG00000028832.11 ENSMUSG00000028832 ENSMUST00000105868 Stmn1 protein_coding Interval_140425 chr6 117995065 117995799 + 0 NA Intergenic Intergenic -1775 ENSMUSG00000082791.3 ENSMUSG00000082791 ENSMUST00000118257 Gm4875 processed_pseudogene Interval_26287 chr11 55772965 55773556 + 0 NA intron (ENSMUSG00000086020.1, intron 1 of 4) antisense-intron (ENSMUSG00000086020.1, intron 1 of 4) 1172 ENSMUSG00000086020.1 ENSMUSG00000086020 ENSMUST00000134285 Gm12239 antisense Interval_147698 chr7 72195666 72196051 + 0 NA intron (ENSMUSG00000032776.9, intron 12 of 22) protein_coding-intron (ENSMUSG00000032776.9, intron 12 of 22) 33502 ENSMUSG00000032776.9 ENSMUSG00000032776 ENSMUST00000206755 Mctp2 protein_coding Interval_10251 chr1 167589242 167589516 + 0 NA Intergenic Intergenic -9081 ENSMUSG00000015843.10 ENSMUSG00000015843 ENSMUST00000111380 Rxrg protein_coding Interval_110693 chr4 6512289 6513442 + 0 NA Intergenic Intergenic -4481 ENSMUSG00000081913.1 ENSMUSG00000081913 ENSMUST00000119966 Gm11803 processed_pseudogene Interval_166481 chr9 59949723 59949960 + 0 NA promoter-TSS (ENSMUSG00000032292.8) protein_coding-promoter-TSS (ENSMUSG00000032292.8) 269 ENSMUSG00000032292.8 ENSMUSG00000032292 ENSMUST00000138888 Nr2e3 protein_coding Interval_34263 chr11 121797582 121798324 + 0 NA Intergenic Intergenic -5154 ENSMUSG00000085126.1 ENSMUSG00000085126 ENSMUST00000153767 Gm12589 lincRNA Interval_73612 chr17 41186839 41187368 + 0 NA Intergenic Intergenic 86065 ENSMUSG00000117062.1 ENSMUSG00000117062 ENSMUST00000232966 Ldha-ps3 processed_pseudogene Interval_80837 chr18 48363404 48363862 + 0 NA Intergenic Intergenic -263071 ENSMUSG00000097965.1 ENSMUSG00000097965 ENSMUST00000182835 Gm5839 processed_pseudogene Interval_65206 chr16 20516475 20518239 + 0 NA intron (ENSMUSG00000003233.12, intron 1 of 14) protein_coding-intron (ENSMUSG00000003233.12, intron 1 of 14) 251 ENSMUSG00000003233.12 ENSMUSG00000003233 ENSMUST00000169552 Dvl3 protein_coding Interval_41938 chr13 4825722 4826156 + 0 NA intron (ENSMUSG00000053499.4, intron 1 of 2) lincRNA-intron (ENSMUSG00000053499.4, intron 1 of 2) 54288 ENSMUSG00000053499.4 ENSMUSG00000053499 ENSMUST00000065956 Gm5444 lincRNA Interval_91624 chr2 44907466 44907748 + 0 NA intron (ENSMUSG00000036890.13, intron 1 of 5) protein_coding-intron (ENSMUSG00000036890.13, intron 1 of 4) -45332 ENSMUSG00000036890.13 ENSMUSG00000036890 ENSMUST00000133442 Gtdc1 protein_coding Interval_84184 chr19 8578270 8579267 + 0 NA Intergenic Intergenic 10428 ENSMUSG00000086174.1 ENSMUSG00000086174 ENSMUST00000136332 Gm6425 processed_pseudogene Interval_36929 chr12 55432732 55434119 + 0 NA Intergenic Intergenic -37196 ENSMUSG00000059033.7 ENSMUSG00000059033 ENSMUST00000161190 Rpl18a-ps1 processed_pseudogene Interval_93885 chr2 77931044 77931776 + 0 NA intron (ENSMUSG00000027014.14, intron 3 of 3) protein_coding-intron (ENSMUSG00000027014.14, intron 5 of 20) 5317 ENSMUSG00000027014.14 ENSMUSG00000027014 ENSMUST00000156863 Cwc22 protein_coding Interval_111184 chr4 14486838 14487887 + 0 NA Intergenic Intergenic 53471 ENSMUSG00000081239.3 ENSMUSG00000081239 ENSMUST00000121022 Gm11836 processed_pseudogene Interval_28473 chr11 76224297 76225396 + 0 NA intron (ENSMUSG00000017286.15, intron 8 of 8) protein_coding-intron (ENSMUSG00000017286.15, intron 8 of 8) 7238 ENSMUSG00000038057.4 ENSMUSG00000038057 ENSMUST00000040806 Dbil5 protein_coding Interval_83961 chr19 5819410 5819850 + 0 NA Intergenic Intergenic 5077 ENSMUSG00000098865.1 ENSMUSG00000098865 ENSMUST00000184512 Gm27702 sRNA Interval_173383 chrX 86052334 86052716 + 0 NA Intergenic Intergenic 8326 ENSMUSG00000035454.1 ENSMUSG00000035454 ENSMUST00000047945 Samt3 protein_coding Interval_104736 chr3 69932880 69933171 + 0 NA Intergenic Intergenic 22657 ENSMUSG00000103549.1 ENSMUSG00000103549 ENSMUST00000194028 Gm17895 processed_pseudogene Interval_98106 chr2 148111880 148112379 + 0 NA Intergenic Intergenic -39021 ENSMUSG00000089458.1 ENSMUSG00000089458 ENSMUST00000158833 Gm24221 snoRNA Interval_33932 chr11 119510499 119510762 + 0 NA exon (ENSMUSG00000039850.16, exon 9 of 9) protein_coding-exon (ENSMUSG00000039850.16, exon 9 of 9) 19079 ENSMUSG00000039850.16 ENSMUSG00000039850 ENSMUST00000132015 Endov protein_coding Interval_138885 chr6 92924382 92924815 + 0 NA intron (ENSMUSG00000030022.14, intron 3 of 39) protein_coding-intron (ENSMUSG00000030022.14, intron 3 of 39) -15980 ENSMUSG00000097462.7 ENSMUSG00000097462 ENSMUST00000204609 9530026P05Rik antisense Interval_84538 chr19 12487864 12489789 + 0 NA intron (ENSMUSG00000039982.8, intron 2 of 8) protein_coding-intron (ENSMUSG00000039982.8, intron 2 of 8) 12628 ENSMUSG00000039982.8 ENSMUSG00000039982 ENSMUST00000045521 Dtx4 protein_coding Interval_127921 chr5 109080003 109080277 + 0 NA Intergenic Intergenic 17810 ENSMUSG00000090688.2 ENSMUSG00000090688 ENSMUST00000095922 Vmn2r12 protein_coding Interval_117629 chr4 125133891 125135492 + 0 NA Intergenic Intergenic -12171 ENSMUSG00000042677.7 ENSMUSG00000042677 ENSMUST00000131685 Zc3h12a protein_coding Interval_157795 chr8 73302979 73303249 + 0 NA intron (ENSMUSG00000004383.18, intron 1 of 14) protein_coding-intron (ENSMUSG00000004383.18, intron 1 of 14) 50426 ENSMUSG00000004383.18 ENSMUSG00000004383 ENSMUST00000146249 Large1 protein_coding Interval_40611 chr12 106018917 106019116 + 0 NA intron (ENSMUSG00000021115.15, intron 1 of 13) protein_coding-intron (ENSMUSG00000021115.15, intron 1 of 14) -6791 ENSMUSG00000021115.15 ENSMUSG00000021115 ENSMUST00000220629 Vrk1 protein_coding Interval_46769 chr13 70134750 70135631 + 0 NA Intergenic Intergenic -14610 ENSMUSG00000113573.1 ENSMUSG00000113573 ENSMUST00000222864 AU017674 lincRNA Interval_106121 chr3 93410057 93410603 + 0 NA intron (ENSMUSG00000102476.1, intron 2 of 3) lincRNA-intron (ENSMUSG00000102476.1, intron 2 of 3) 11098 ENSMUSG00000104171.1 ENSMUSG00000104171 ENSMUST00000192475 Gm18296 processed_pseudogene Interval_64000 chr16 5157328 5158256 + 0 NA intron (ENSMUSG00000091712.2, intron 2 of 15) protein_coding-intron (ENSMUSG00000091712.2, intron 2 of 15) 10683 ENSMUSG00000091712.2 ENSMUSG00000091712 ENSMUST00000230616 Sec14l5 protein_coding Interval_50202 chr14 9642260 9642502 + 0 NA intron (ENSMUSG00000060579.13, intron 4 of 5) protein_coding-intron (ENSMUSG00000060579.13, intron 8 of 9) -172826 ENSMUSG00000114298.1 ENSMUSG00000114298 ENSMUST00000224617 Gm48371 lincRNA Interval_86981 chr19 45317213 45318118 + 0 NA promoter-TSS (ENSMUSG00000102057.1) lincRNA-promoter-TSS (ENSMUSG00000102057.1) -228 ENSMUSG00000102057.1 ENSMUSG00000102057 ENSMUST00000191181 Gm29594 lincRNA Interval_23333 chr11 21480414 21481191 + 0 NA Intergenic Intergenic -10512 ENSMUSG00000082607.1 ENSMUSG00000082607 ENSMUST00000122122 Gm12045 processed_pseudogene Interval_17373 chr10 76171030 76171307 + 0 NA intron (ENSMUSG00000020229.4, intron 9 of 14) protein_coding-intron (ENSMUSG00000020229.4, intron 9 of 14) 23717 ENSMUSG00000020229.4 ENSMUSG00000020229 ENSMUST00000020450 Slc5a4a protein_coding Interval_109579 chr3 144599006 144600535 + 0 NA Intergenic Intergenic -12818 ENSMUSG00000064960.1 ENSMUSG00000064960 ENSMUST00000083026 Gm24406 snoRNA Interval_16684 chr10 67025589 67026576 + 0 NA intron (ENSMUSG00000112925.1, intron 2 of 6) protein_coding-intron (ENSMUSG00000019873.8, intron 5 of 7) 11240 ENSMUSG00000019873.8 ENSMUSG00000019873 ENSMUST00000219431 Reep3 protein_coding Interval_11315 chr1 180910526 180912243 + 0 NA Intergenic Intergenic 5469 ENSMUSG00000026520.8 ENSMUSG00000026520 ENSMUST00000195270 Pycr2 protein_coding Interval_37060 chr12 57196461 57197617 + 0 NA exon (ENSMUSG00000035472.14, exon 1 of 10) protein_coding-exon (ENSMUSG00000035472.14, exon 1 of 10) -33373 ENSMUSG00000079104.4 ENSMUSG00000079104 ENSMUST00000139049 Prps1l3 protein_coding Interval_52292 chr14 43986825 43988007 + 0 NA promoter-TSS (ENSMUSG00000115724.1) lincRNA-promoter-TSS (ENSMUSG00000115724.1) 50 ENSMUSG00000115724.1 ENSMUSG00000115724 ENSMUST00000227597 Gm49087 lincRNA Interval_109190 chr3 137793354 137793927 + 0 NA Intergenic Intergenic 9829 ENSMUSG00000105427.1 ENSMUSG00000105427 ENSMUST00000198262 Gm31678 lincRNA Interval_116407 chr4 111587979 111588224 + 0 NA intron (ENSMUSG00000061298.14, intron 1 of 3) protein_coding-intron (ENSMUSG00000061298.14, intron 9 of 12) 21406 ENSMUSG00000061298.14 ENSMUSG00000061298 ENSMUST00000142460 Agbl4 protein_coding Interval_31901 chr11 103711914 103712510 + 0 NA intron (ENSMUSG00000085154.7, intron 2 of 2) processed_transcript-intron (ENSMUSG00000085154.7, intron 2 of 2) -11738 ENSMUSG00000086794.1 ENSMUSG00000086794 ENSMUST00000150442 Gm11642 processed_transcript Interval_90151 chr2 28582375 28583395 + 0 NA TTS (ENSMUSG00000026816.14) protein_coding-TTS (ENSMUSG00000026816.14) 382 ENSMUSG00000026816.14 ENSMUSG00000026816 ENSMUST00000150699 Gtf3c5 protein_coding Interval_124329 chr5 44048771 44049064 + 0 NA intron (ENSMUSG00000029086.15, intron 4 of 23) protein_coding-intron (ENSMUSG00000029086.15, intron 3 of 21) -11252 ENSMUSG00000029086.15 ENSMUSG00000029086 ENSMUST00000198218 Prom1 protein_coding Interval_57323 chr15 8739558 8741021 + 0 NA Intergenic Intergenic -29880 ENSMUSG00000005360.14 ENSMUSG00000005360 ENSMUST00000126747 Slc1a3 protein_coding Interval_159017 chr8 88835448 88836545 + 0 NA Intergenic Intergenic 27078 ENSMUSG00000109778.1 ENSMUSG00000109778 ENSMUST00000211407 Gm45504 TEC Interval_143313 chr7 5103903 5104147 + 0 NA Intergenic Intergenic 12925 ENSMUSG00000035191.15 ENSMUSG00000035191 ENSMUST00000208468 Rfpl4 protein_coding Interval_157258 chr8 68734465 68736564 + 0 NA promoter-TSS (ENSMUSG00000036356.15) protein_coding-promoter-TSS (ENSMUSG00000036356.15) -63353 ENSMUSG00000081745.1 ENSMUSG00000081745 ENSMUST00000121595 Gm15549 processed_pseudogene Interval_151600 chr7 124782766 124783570 + 0 NA Intergenic Intergenic -74233 ENSMUSG00000086254.1 ENSMUSG00000086254 ENSMUST00000130240 3100003L05Rik lincRNA Interval_99745 chr2 164635227 164636275 + 0 NA intron (ENSMUSG00000070530.5, intron 3 of 3) protein_coding-intron (ENSMUSG00000070530.5, intron 3 of 3) 3045 ENSMUSG00000070530.5 ENSMUSG00000070530 ENSMUST00000109336 Wfdc16 protein_coding Interval_100882 chr2 173095092 173095444 + 0 NA intron (ENSMUSG00000070495.11, intron 10 of 11) protein_coding-intron (ENSMUSG00000070495.11, intron 10 of 10) 24257 ENSMUSG00000070495.11 ENSMUSG00000070495 ENSMUST00000179693 Ctcfl protein_coding Interval_64605 chr16 13630008 13630220 + 0 NA intron (ENSMUSG00000022685.9, intron 15 of 23) protein_coding-intron (ENSMUSG00000022685.9, intron 14 of 23) 38024 ENSMUSG00000022685.9 ENSMUSG00000022685 ENSMUST00000229251 Parn protein_coding Interval_44570 chr13 46258826 46259059 + 0 NA Intergenic Intergenic -14779 ENSMUSG00000063529.3 ENSMUSG00000063529 ENSMUST00000076622 Stmnd1 protein_coding Interval_26932 chr11 61665102 61666386 + 0 NA intron (ENSMUSG00000004837.2, intron 3 of 4) protein_coding-intron (ENSMUSG00000004837.2, intron 3 of 4) -3302 ENSMUSG00000004837.2 ENSMUSG00000004837 ENSMUST00000155380 Grap protein_coding Interval_61597 chr15 82876569 82877879 + 0 NA intron (ENSMUSG00000041852.15, intron 1 of 1) protein_coding-intron (ENSMUSG00000041852.15, intron 1 of 4) -21856 ENSMUSG00000100199.1 ENSMUSG00000100199 ENSMUST00000186291 Gm20324 antisense Interval_133678 chr6 8484546 8486543 + 0 NA intron (ENSMUSG00000107705.1, intron 4 of 10) protein_coding-intron (ENSMUSG00000107705.1, intron 4 of 10) 15812 ENSMUSG00000077250.1 ENSMUSG00000077250 ENSMUST00000104062 Gm26075 snoRNA Interval_106044 chr3 91388829 91389376 + 0 NA Intergenic Intergenic -298299 ENSMUSG00000091175.2 ENSMUSG00000091175 ENSMUST00000166173 S100a7l2 protein_coding Interval_53610 chr14 59942550 59944244 + 0 NA intron (ENSMUSG00000021983.16, intron 23 of 35) protein_coding-intron (ENSMUSG00000021983.16, intron 23 of 35) 97094 ENSMUSG00000087286.1 ENSMUSG00000087286 ENSMUST00000132939 Gm9013 processed_pseudogene Interval_102272 chr3 20199075 20200156 + 0 NA Intergenic Intergenic 22744 ENSMUSG00000099105.1 ENSMUSG00000099105 ENSMUST00000184606 Mir7007 miRNA Interval_170129 chr9 105243985 105244449 + 0 NA exon (ENSMUSG00000035032.12, exon 12 of 12) protein_coding-exon (ENSMUSG00000035032.12, exon 12 of 12) 157 ENSMUSG00000035032.12 ENSMUSG00000035032 ENSMUST00000140851 Nek11 protein_coding Interval_24913 chr11 41214310 41215431 + 0 NA Intergenic Intergenic -3967 ENSMUSG00000086475.1 ENSMUSG00000086475 ENSMUST00000133945 Platr13 lincRNA Interval_140746 chr6 121009745 121010757 + 0 NA intron (ENSMUSG00000051586.17, intron 8 of 10) protein_coding-intron (ENSMUSG00000051586.17, intron 16 of 17) 51407 ENSMUSG00000108171.1 ENSMUSG00000108171 ENSMUST00000203013 Gm43915 antisense Interval_157126 chr8 65677490 65677955 + 0 NA intron (ENSMUSG00000036469.16, intron 1 of 7) protein_coding-intron (ENSMUSG00000036469.16, intron 1 of 7) -10021 ENSMUSG00000064763.1 ENSMUSG00000064763 ENSMUST00000082829 Gm23515 snRNA Interval_114940 chr4 87367938 87370415 + 0 NA Intergenic Intergenic -63096 ENSMUSG00000093065.1 ENSMUSG00000093065 ENSMUST00000175324 Gm23154 miRNA Interval_28415 chr11 75724260 75724487 + 0 NA Intergenic Intergenic -27231 ENSMUSG00000020849.13 ENSMUSG00000020849 ENSMUST00000155057 Ywhae protein_coding Interval_90016 chr2 27345134 27345351 + 0 NA promoter-TSS (ENSMUSG00000009621.18) protein_coding-promoter-TSS (ENSMUSG00000009621.18) 18538 ENSMUSG00000086669.1 ENSMUSG00000086669 ENSMUST00000156020 AA645442 antisense Interval_169968 chr9 103314228 103315237 + 0 NA intron (ENSMUSG00000032555.10, intron 6 of 27) protein_coding-intron (ENSMUSG00000032555.10, intron 6 of 27) -29204 ENSMUSG00000032555.10 ENSMUSG00000032555 ENSMUST00000185972 Topbp1 protein_coding Interval_7379 chr1 130726530 130726785 + 0 NA TTS (ENSMUSG00000104515.1) TEC-TTS (ENSMUSG00000104515.1) 2164 ENSMUSG00000104515.1 ENSMUSG00000104515 ENSMUST00000195439 Gm37163 TEC Interval_109225 chr3 138041138 138042789 + 0 NA Intergenic Intergenic 25425 ENSMUSG00000049349.3 ENSMUSG00000049349 ENSMUST00000053318 Gm5105 protein_coding Interval_153781 chr8 8488646 8490198 + 0 NA intron (ENSMUSG00000108941.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000108941.1, intron 1 of 1) 1120 ENSMUSG00000108941.1 ENSMUSG00000108941 ENSMUST00000208416 D530014G21Rik lincRNA Interval_107069 chr3 103285619 103286607 + 0 NA intron (ENSMUSG00000033014.12, intron 1 of 18) protein_coding-intron (ENSMUSG00000033014.12, intron 1 of 19) -38850 ENSMUSG00000104976.1 ENSMUSG00000104976 ENSMUST00000200621 Gm43060 processed_pseudogene Interval_123123 chr5 29824168 29825383 + 0 NA Intergenic Intergenic 8532 ENSMUSG00000106551.1 ENSMUSG00000106551 ENSMUST00000198125 Gm1969 processed_pseudogene Interval_44803 chr13 48745279 48745848 + 0 NA Intergenic Intergenic 18018 ENSMUSG00000113297.1 ENSMUSG00000113297 ENSMUST00000222192 Rpl17-ps6 processed_pseudogene Interval_61083 chr15 79128268 79128487 + 0 NA TTS (ENSMUSG00000033029.12) protein_coding-TTS (ENSMUSG00000033029.12) -3309 ENSMUSG00000033039.10 ENSMUSG00000033039 ENSMUST00000230202 Micall1 protein_coding Interval_171587 chr9 119401470 119403806 + 0 NA intron (ENSMUSG00000061393.14, intron 1 of 10) protein_coding-intron (ENSMUSG00000061393.14, intron 1 of 9) 6378 ENSMUSG00000111204.1 ENSMUSG00000111204 ENSMUST00000217028 Gm47320 antisense Interval_117462 chr4 123896630 123897122 + 0 NA Intergenic Intergenic -5546 ENSMUSG00000080993.1 ENSMUSG00000080993 ENSMUST00000121015 Gm12903 processed_pseudogene Interval_103841 chr3 53564214 53565185 + 0 NA intron (ENSMUSG00000037016.11, intron 6 of 23) protein_coding-intron (ENSMUSG00000037016.11, intron 6 of 23) -41679 ENSMUSG00000037016.11 ENSMUSG00000037016 ENSMUST00000199323 Frem2 protein_coding Interval_79776 chr18 35067687 35068210 + 0 NA intron (ENSMUSG00000118380.1, intron 3 of 3) processed_transcript-intron (ENSMUSG00000118380.1, intron 4 of 5) 19675 ENSMUSG00000117727.1 ENSMUSG00000117727 ENSMUST00000238134 Gm3587 lincRNA Interval_85704 chr19 29821057 29821547 + 0 NA Intergenic Intergenic -8348 ENSMUSG00000074909.5 ENSMUSG00000074909 ENSMUST00000235906 Ranbp6 protein_coding Interval_94025 chr2 80899474 80899738 + 0 NA Intergenic Intergenic 9500 ENSMUSG00000084297.1 ENSMUSG00000084297 ENSMUST00000118509 Gm13755 processed_pseudogene Interval_57360 chr15 9742454 9742714 + 0 NA intron (ENSMUSG00000072663.12, intron 1 of 32) protein_coding-intron (ENSMUSG00000072663.12, intron 1 of 17) 6254 ENSMUSG00000072663.12 ENSMUSG00000072663 ENSMUST00000159368 Spef2 protein_coding Interval_166704 chr9 62155111 62156212 + 0 NA Intergenic Intergenic -33067 ENSMUSG00000092696.1 ENSMUSG00000092696 ENSMUST00000174955 Mir5133 miRNA Interval_4722 chr1 77712884 77713502 + 0 NA Intergenic Intergenic 142521 ENSMUSG00000101506.1 ENSMUSG00000101506 ENSMUST00000185671 Gm28385 processed_pseudogene Interval_24942 chr11 41792221 41792530 + 0 NA intron (ENSMUSG00000087306.7, intron 2 of 8) processed_transcript-intron (ENSMUSG00000087306.7, intron 2 of 8) -2556 ENSMUSG00000084293.1 ENSMUSG00000084293 ENSMUST00000119666 Gm12143 processed_pseudogene Interval_57920 chr15 25412186 25414992 + 0 NA promoter-TSS (ENSMUSG00000056089.6) lincRNA-promoter-TSS (ENSMUSG00000056089.6) 109 ENSMUSG00000045763.8 ENSMUSG00000045763 ENSMUST00000228597 Basp1 protein_coding Interval_78583 chr18 14897345 14898236 + 0 NA intron (ENSMUSG00000054321.7, intron 14 of 14) protein_coding-intron (ENSMUSG00000054321.7, intron 14 of 14) 26321 ENSMUSG00000117436.1 ENSMUSG00000117436 ENSMUST00000234412 Gm9474 processed_pseudogene Interval_1015 chr1 14084352 14085852 + 0 NA Intergenic Intergenic 27717 ENSMUSG00000104209.1 ENSMUSG00000104209 ENSMUST00000193148 Gm37400 TEC Interval_52827 chr14 50910143 50912205 + 0 NA intron (ENSMUSG00000006289.14, intron 11 of 11) protein_coding-intron (ENSMUSG00000006289.14, intron 11 of 11) 6200 ENSMUSG00000006289.14 ENSMUSG00000006289 ENSMUST00000160464 Osgep protein_coding Interval_24221 chr11 31620862 31621114 + 0 NA Intergenic Intergenic 50739 ENSMUSG00000044502.16 ENSMUSG00000044502 ENSMUST00000109415 Bod1 protein_coding Interval_147098 chr7 62853901 62854124 + 0 NA Intergenic Intergenic -30339 ENSMUSG00000109344.1 ENSMUSG00000109344 ENSMUST00000207359 A26c2 protein_coding Interval_166524 chr9 60521406 60523192 + 0 NA promoter-TSS (ENSMUSG00000032289.15) protein_coding-promoter-TSS (ENSMUSG00000032289.15) -5120 ENSMUSG00000111809.1 ENSMUSG00000111809 ENSMUST00000215297 Gm49334 lincRNA Interval_87491 chr19 53020021 53020706 + 0 NA promoter-TSS (ENSMUSG00000025027.18) protein_coding-promoter-TSS (ENSMUSG00000025027.18) -9607 ENSMUSG00000098730.1 ENSMUSG00000098730 ENSMUST00000184510 Mir6407 miRNA Interval_95899 chr2 118199992 118200319 + 0 NA intron (ENSMUSG00000027344.14, intron 10 of 11) protein_coding-intron (ENSMUSG00000027344.14, intron 10 of 11) 48627 ENSMUSG00000093368.1 ENSMUSG00000093368 ENSMUST00000175627 Gm22800 miRNA Interval_79401 chr18 31682755 31684326 + 0 NA intron (ENSMUSG00000024260.14, intron 14 of 20) protein_coding-intron (ENSMUSG00000024260.14, intron 14 of 20) 49169 ENSMUSG00000024260.14 ENSMUSG00000024260 ENSMUST00000234772 Sap130 protein_coding Interval_51163 chr14 24273232 24274042 + 0 NA Intergenic Intergenic 8894 ENSMUSG00000118622.1 ENSMUSG00000118622 ENSMUST00000239247 AC163638.3 unprocessed_pseudogene Interval_55215 chr14 79389847 79391180 + 0 NA intron (ENSMUSG00000022020.15, intron 1 of 6) protein_coding-intron (ENSMUSG00000022020.15, intron 1 of 19) -7473 ENSMUSG00000022022.3 ENSMUSG00000022022 ENSMUST00000227610 Mtrf1 protein_coding Interval_108896 chr3 133081644 133082429 + 0 NA exon (ENSMUSG00000028018.15, exon 3 of 3) protein_coding-exon (ENSMUSG00000028018.15, exon 3 of 3) 1092 ENSMUSG00000028018.15 ENSMUSG00000028018 ENSMUST00000197381 Gstcd protein_coding Interval_119952 chr4 141093589 141094596 + 0 NA intron (ENSMUSG00000045004.3, intron 4 of 14) protein_coding-intron (ENSMUSG00000045004.3, intron 4 of 14) 9228 ENSMUSG00000082246.1 ENSMUSG00000082246 ENSMUST00000117116 Gm13047 processed_pseudogene Interval_21117 chr10 126627977 126628745 + 0 NA Intergenic Intergenic -35637 ENSMUSG00000112208.1 ENSMUSG00000112208 ENSMUST00000219762 Gm40797 lincRNA Interval_139368 chr6 99540725 99543158 + 0 NA intron (ENSMUSG00000030068.4, intron 1 of 1) protein_coding-intron (ENSMUSG00000030068.4, intron 3 of 5) -33950 ENSMUSG00000084547.1 ENSMUSG00000084547 ENSMUST00000122598 Gm24936 misc_RNA Interval_90527 chr2 30967027 30968437 + 0 NA exon (ENSMUSG00000026849.18, exon 1 of 5) protein_coding-exon (ENSMUSG00000026849.18, exon 1 of 5) -3884 ENSMUSG00000026849.18 ENSMUSG00000026849 ENSMUST00000143199 Tor1a protein_coding Interval_27439 chr11 67695129 67695953 + 0 NA exon (ENSMUSG00000020907.1, exon 1 of 3) protein_coding-exon (ENSMUSG00000020907.1, exon 1 of 3) 215 ENSMUSG00000020907.1 ENSMUSG00000020907 ENSMUST00000021290 Rcvrn protein_coding Interval_27602 chr11 68988041 68988612 + 0 NA exon (ENSMUSG00000020899.16, exon 7 of 7) protein_coding-exon (ENSMUSG00000020899.16, exon 7 of 7) 2352 ENSMUSG00000092727.1 ENSMUSG00000092727 ENSMUST00000174986 Mir3062 miRNA Interval_79710 chr18 34662998 34663904 + 0 NA Intergenic Intergenic 16051 ENSMUSG00000064857.1 ENSMUSG00000064857 ENSMUST00000082923 n-R5s25 rRNA Interval_151959 chr7 127792653 127792850 + 0 NA intron (ENSMUSG00000108815.1, intron 7 of 18) protein_coding-intron (ENSMUSG00000042308.14, intron 13 of 18) 7143 ENSMUSG00000108815.1 ENSMUSG00000108815 ENSMUST00000136823 Gm49388 protein_coding Interval_73386 chr17 36920303 36920800 + 0 NA Intergenic Intergenic -3241 ENSMUSG00000092239.1 ENSMUSG00000092239 ENSMUST00000174380 1700031A10Rik antisense Interval_114715 chr4 84222516 84225287 + 0 NA Intergenic Intergenic 68029 ENSMUSG00000028487.18 ENSMUSG00000028487 ENSMUST00000176370 Bnc2 protein_coding Interval_20011 chr10 111957513 111958278 + 0 NA Intergenic Intergenic -14898 ENSMUSG00000063334.16 ENSMUSG00000063334 ENSMUST00000174653 Krr1 protein_coding Interval_48056 chr13 95611859 95612392 + 0 NA intron (ENSMUSG00000048376.6, intron 1 of 1) protein_coding-intron (ENSMUSG00000048376.6, intron 1 of 1) 6362 ENSMUSG00000048376.6 ENSMUSG00000048376 ENSMUST00000059193 F2r protein_coding Interval_167923 chr9 74330905 74331520 + 0 NA Intergenic Intergenic -31398 ENSMUSG00000084725.2 ENSMUSG00000084725 ENSMUST00000122776 Gm24141 snRNA Interval_126942 chr5 97839158 97839755 + 0 NA Intergenic Intergenic 156639 ENSMUSG00000029338.13 ENSMUSG00000029338 ENSMUST00000202736 Antxr2 protein_coding Interval_89793 chr2 25468404 25469316 + 0 NA exon (ENSMUSG00000015090.13, exon 3 of 7) protein_coding-exon (ENSMUSG00000015090.13, exon 3 of 7) 523 ENSMUSG00000015090.13 ENSMUSG00000015090 ENSMUST00000137417 Ptgds protein_coding Interval_70716 chr17 13815905 13816093 + 0 NA intron (ENSMUSG00000068036.16, intron 5 of 32) protein_coding-intron (ENSMUSG00000068036.16, intron 5 of 18) 46804 ENSMUSG00000089883.1 ENSMUSG00000089883 ENSMUST00000160079 Gm3355 processed_pseudogene Interval_150171 chr7 107573733 107574454 + 0 NA intron (ENSMUSG00000051041.8, intron 2 of 3) protein_coding-intron (ENSMUSG00000051041.8, intron 2 of 2) 6327 ENSMUSG00000051041.8 ENSMUSG00000051041 ENSMUST00000239087 Olfml1 protein_coding Interval_11933 chr1 187291672 187292611 + 0 NA intron (ENSMUSG00000039210.16, intron 6 of 6) protein_coding-intron (ENSMUSG00000039210.16, intron 5 of 9) 55684 ENSMUSG00000104394.2 ENSMUSG00000104394 ENSMUST00000193542 Gm37254 TEC Interval_122662 chr5 24533272 24534255 + 0 NA exon (ENSMUSG00000038204.13, exon 5 of 6) protein_coding-exon (ENSMUSG00000038204.13, exon 5 of 6) -6561 ENSMUSG00000067724.5 ENSMUSG00000067724 ENSMUST00000088311 Gbx1 protein_coding Interval_27585 chr11 68874838 68875441 + 0 NA Intergenic Intergenic -13414 ENSMUSG00000046490.7 ENSMUSG00000046490 ENSMUST00000065213 Rnf222 protein_coding Interval_3939 chr1 64956339 64957212 + 0 NA promoter-TSS (ENSMUSG00000051344.13) protein_coding-promoter-TSS (ENSMUSG00000051344.13) 22373 ENSMUSG00000097264.1 ENSMUSG00000097264 ENSMUST00000181350 Rpl31-ps24 processed_pseudogene Interval_152157 chr7 130251710 130254030 + 0 NA intron (ENSMUSG00000030849.18, intron 2 of 16) protein_coding-intron (ENSMUSG00000030849.18, intron 1 of 14) 13385 ENSMUSG00000030849.18 ENSMUSG00000030849 ENSMUST00000208844 Fgfr2 protein_coding Interval_53204 chr14 55101228 55101995 + 0 NA TTS (ENSMUSG00000040701.16) protein_coding-TTS (ENSMUSG00000040701.16) 4536 ENSMUSG00000040701.16 ENSMUSG00000040701 ENSMUST00000144197 Ap1g2 protein_coding Interval_102404 chr3 24108650 24108927 + 0 NA intron (ENSMUSG00000102758.3, intron 9 of 13) protein_coding-intron (ENSMUSG00000102758.3, intron 9 of 13) -224280 ENSMUSG00000057036.7 ENSMUSG00000057036 ENSMUST00000077389 Gm7536 processed_pseudogene Interval_122703 chr5 24774696 24775009 + 0 NA Intergenic Intergenic -23528 ENSMUSG00000038135.4 ENSMUSG00000038135 ENSMUST00000047119 Crygn protein_coding Interval_557 chr1 7309266 7309615 + 0 NA Intergenic Intergenic -6011 ENSMUSG00000102768.1 ENSMUSG00000102768 ENSMUST00000192649 Gm19002 processed_pseudogene Interval_105708 chr3 88685084 88686584 + 0 NA promoter-TSS (ENSMUSG00000028060.14) protein_coding-promoter-TSS (ENSMUSG00000028060.14) 563 ENSMUSG00000105512.1 ENSMUSG00000105512 ENSMUST00000198351 Gm43714 antisense Interval_122558 chr5 23797691 23798167 + 0 NA TTS (ENSMUSG00000028999.15) protein_coding-TTS (ENSMUSG00000028999.15) 7227 ENSMUSG00000104569.1 ENSMUSG00000104569 ENSMUST00000199495 Gm43054 TEC Interval_121609 chr5 3888255 3888463 + 0 NA Intergenic Intergenic 5537 ENSMUSG00000040429.6 ENSMUSG00000040429 ENSMUST00000196417 Mterf1a protein_coding Interval_90829 chr2 32859088 32861454 + 0 NA Intergenic Intergenic -13065 ENSMUSG00000026797.16 ENSMUSG00000026797 ENSMUST00000208840 Stxbp1 protein_coding Interval_68781 chr16 86196093 86199009 + 0 NA Intergenic Intergenic -38620 ENSMUSG00000116799.1 ENSMUSG00000116799 ENSMUST00000231827 Gm32357 lincRNA Interval_152139 chr7 130030595 130031244 + 0 NA Intergenic Intergenic -4175 ENSMUSG00000065763.1 ENSMUSG00000065763 ENSMUST00000083829 Gm23847 snRNA Interval_100664 chr2 170887426 170888773 + 0 NA Intergenic Intergenic 66725 ENSMUSG00000080955.1 ENSMUSG00000080955 ENSMUST00000117955 Gm14263 processed_pseudogene Interval_31517 chr11 101130098 101130303 + 0 NA Intergenic Intergenic 5700 ENSMUSG00000035198.9 ENSMUSG00000035198 ENSMUST00000137844 Tubg1 protein_coding Interval_2866 chr1 46935994 46936222 + 0 NA Intergenic Intergenic -39229 ENSMUSG00000100160.1 ENSMUSG00000100160 ENSMUST00000185210 Gm28527 processed_pseudogene Interval_139196 chr6 97101418 97103065 + 0 NA Intergenic Intergenic -41848 ENSMUSG00000046500.8 ENSMUSG00000046500 ENSMUST00000203930 Tafa4 protein_coding Interval_17100 chr10 71355988 71356968 + 0 NA intron (ENSMUSG00000060733.13, intron 1 of 5) protein_coding-intron (ENSMUSG00000060733.13, intron 1 of 5) 8642 ENSMUSG00000060733.13 ENSMUSG00000060733 ENSMUST00000145521 Ipmk protein_coding Interval_64944 chr16 17432334 17433447 + 0 NA Intergenic Intergenic -19586 ENSMUSG00000006134.4 ENSMUSG00000006134 ENSMUST00000231629 Crkl protein_coding Interval_1878 chr1 34254787 34255137 + 0 NA intron (ENSMUSG00000026131.20, intron 9 of 22) protein_coding-intron (ENSMUSG00000026131.20, intron 64 of 97) 16166 ENSMUSG00000103001.1 ENSMUSG00000103001 ENSMUST00000194920 A930005N03Rik TEC Interval_99748 chr2 164673041 164673291 + 0 NA intron (ENSMUSG00000078940.8, intron 1 of 4) protein_coding-intron (ENSMUSG00000078940.8, intron 1 of 4) -7631 ENSMUSG00000078940.8 ENSMUSG00000078940 ENSMUST00000167694 Wfdc11 protein_coding Interval_128148 chr5 111298843 111299064 + 0 NA Intergenic Intergenic -23859 ENSMUSG00000099130.1 ENSMUSG00000099130 ENSMUST00000183861 Gm27602 misc_RNA Interval_79035 chr18 24095184 24095498 + 0 NA Intergenic Intergenic -13417 ENSMUSG00000117500.1 ENSMUSG00000117500 ENSMUST00000234749 Gm18085 processed_pseudogene Interval_117722 chr4 125785781 125786463 + 0 NA Intergenic Intergenic 136295 ENSMUSG00000085562.7 ENSMUSG00000085562 ENSMUST00000144539 2610028E06Rik lincRNA Interval_57923 chr15 25445309 25446201 + 0 NA promoter-TSS (ENSMUSG00000115850.1) lincRNA-promoter-TSS (ENSMUSG00000115850.1) -115 ENSMUSG00000115850.1 ENSMUSG00000115850 ENSMUST00000226289 Gm48956 lincRNA Interval_74729 chr17 56189173 56189739 + 0 NA exon (ENSMUSG00000001229.9, exon 19 of 21) protein_coding-exon (ENSMUSG00000001229.9, exon 19 of 21) -5792 ENSMUSG00000019579.13 ENSMUSG00000019579 ENSMUST00000151093 Mydgf protein_coding Interval_118475 chr4 131904395 131904882 + 0 NA intron (ENSMUSG00000085667.1, intron 4 of 4) processed_transcript-intron (ENSMUSG00000085667.1, intron 4 of 4) -1327 ENSMUSG00000083013.1 ENSMUSG00000083013 ENSMUST00000121250 Gm12978 transcribed_processed_pseudogene Interval_90423 chr2 30358575 30359688 + 0 NA intron (ENSMUSG00000026860.16, intron 1 of 10) protein_coding-intron (ENSMUSG00000026860.16, intron 1 of 10) 158 ENSMUSG00000026860.16 ENSMUSG00000026860 ENSMUST00000139963 Sh3glb2 protein_coding Interval_6367 chr1 106409220 106409924 + 0 NA Intergenic Intergenic -7585 ENSMUSG00000100247.1 ENSMUSG00000100247 ENSMUST00000187918 A530053M12Rik lincRNA Interval_51909 chr14 33757941 33758564 + 0 NA Intergenic Intergenic 48789 ENSMUSG00000115134.1 ENSMUSG00000115134 ENSMUST00000227984 Gm49108 lincRNA Interval_51332 chr14 26495058 26495664 + 0 NA intron (ENSMUSG00000021870.17, intron 1 of 22) protein_coding-intron (ENSMUSG00000021870.17, intron 1 of 22) -2294 ENSMUSG00000065864.1 ENSMUSG00000065864 ENSMUST00000083930 Gm24031 snoRNA Interval_107190 chr3 104453452 104454886 + 0 NA exon (ENSMUSG00000032913.13, exon 18 of 18) protein_coding-exon (ENSMUSG00000032913.13, exon 18 of 18) 22561 ENSMUSG00000105304.1 ENSMUSG00000105304 ENSMUST00000199385 Gm43696 sense_intronic Interval_164122 chr9 31683099 31684068 + 0 NA Intergenic Intergenic -5557 ENSMUSG00000110853.1 ENSMUSG00000110853 ENSMUST00000217207 Gm47436 lincRNA Interval_17749 chr10 79883503 79884127 + 0 NA TTS (ENSMUSG00000057729.12) protein_coding-TTS (ENSMUSG00000057729.12) 2032 ENSMUSG00000057729.12 ENSMUSG00000057729 ENSMUST00000171489 Prtn3 protein_coding Interval_141324 chr6 127247666 127248509 + 0 NA Intergenic Intergenic 6557 ENSMUSG00000107013.1 ENSMUSG00000107013 ENSMUST00000202533 Gm43635 lincRNA Interval_103549 chr3 48632136 48632350 + 0 NA Intergenic Intergenic -23141 ENSMUSG00000037910.2 ENSMUSG00000037910 ENSMUST00000036023 1700018B24Rik lincRNA Interval_168405 chr9 80086645 80086980 + 0 NA intron (ENSMUSG00000034252.14, intron 1 of 1) protein_coding-intron (ENSMUSG00000034252.14, intron 1 of 22) -13056 ENSMUSG00000093779.1 ENSMUSG00000093779 ENSMUST00000175815 Gm20648 processed_pseudogene Interval_5845 chr1 92453742 92454210 + 0 NA intron (ENSMUSG00000026260.12, intron 8 of 9) protein_coding-intron (ENSMUSG00000026260.12, intron 8 of 9) 10566 ENSMUSG00000098288.1 ENSMUSG00000098288 ENSMUST00000183483 Mir6900 miRNA Interval_97535 chr2 139409744 139410103 + 0 NA intron (ENSMUSG00000085071.1, intron 2 of 5) processed_transcript-intron (ENSMUSG00000085071.1, intron 2 of 5) -25583 ENSMUSG00000081799.1 ENSMUSG00000081799 ENSMUST00000117817 Gm14071 processed_pseudogene Interval_50449 chr14 13453728 13454130 + 0 NA promoter-TSS (ENSMUSG00000056296.17) protein_coding-promoter-TSS (ENSMUSG00000056296.17) -99849 ENSMUSG00000081115.2 ENSMUSG00000081115 ENSMUST00000118492 Gm15913 processed_pseudogene Interval_161692 chr8 122079893 122080397 + 0 NA intron (ENSMUSG00000092329.1, intron 1 of 15) protein_coding-intron (ENSMUSG00000092329.1, intron 1 of 15) 102121 ENSMUSG00000099140.1 ENSMUSG00000099140 ENSMUST00000184699 Mir7237 miRNA Interval_48061 chr13 95656776 95657745 + 0 NA intron (ENSMUSG00000021676.10, intron 28 of 35) protein_coding-intron (ENSMUSG00000021676.10, intron 28 of 35) 14259 ENSMUSG00000021676.10 ENSMUSG00000021676 ENSMUST00000238496 Iqgap2 protein_coding Interval_76963 chr17 85216217 85216461 + 0 NA intron (ENSMUSG00000071037.6, intron 3 of 10) protein_coding-intron (ENSMUSG00000071037.6, intron 3 of 10) 125733 ENSMUSG00000071037.6 ENSMUSG00000071037 ENSMUST00000234501 Camkmt protein_coding Interval_52788 chr14 50031279 50032397 + 0 NA Intergenic Intergenic 8537 ENSMUSG00000068437.4 ENSMUSG00000068437 ENSMUST00000089844 Olfr725 protein_coding Interval_133312 chr5 151560221 151560416 + 0 NA TTS (ENSMUSG00000091794.3) protein_coding-TTS (ENSMUSG00000091794.3) -11051 ENSMUSG00000106703.1 ENSMUSG00000106703 ENSMUST00000202039 Vmn2r-ps26 unprocessed_pseudogene Interval_141059 chr6 124740503 124741639 + 0 NA promoter-TSS (ENSMUSG00000072772.3) protein_coding-promoter-TSS (ENSMUSG00000072772.3) -6 ENSMUSG00000072772.3 ENSMUSG00000072772 ENSMUST00000137318 Grcc10 protein_coding Interval_11022 chr1 178485338 178485659 + 0 NA TTS (ENSMUSG00000026495.8) protein_coding-TTS (ENSMUSG00000026495.8) -43627 ENSMUSG00000026494.12 ENSMUSG00000026494 ENSMUST00000160789 Kif26b protein_coding Interval_151618 chr7 125405969 125407396 + 0 NA Intergenic Intergenic 11432 ENSMUSG00000108814.1 ENSMUSG00000108814 ENSMUST00000206549 Gm30717 lincRNA Interval_9218 chr1 155158247 155159517 + 0 NA promoter-TSS (ENSMUSG00000026470.14) protein_coding-promoter-TSS (ENSMUSG00000026470.14) -12068 ENSMUSG00000026471.14 ENSMUSG00000026471 ENSMUST00000195579 Mr1 protein_coding Interval_119994 chr4 141281586 141285505 + 0 NA Intergenic Intergenic 5106 ENSMUSG00000085395.1 ENSMUSG00000085395 ENSMUST00000142429 Gm13056 lincRNA Interval_76908 chr17 84898612 84898835 + 0 NA Intergenic Intergenic 3846 ENSMUSG00000117451.1 ENSMUSG00000117451 ENSMUST00000234338 Gm49982 processed_pseudogene Interval_144271 chr7 24150664 24151028 + 0 NA Intergenic Intergenic 16618 ENSMUSG00000047603.9 ENSMUSG00000047603 ENSMUST00000056549 Zfp235 protein_coding Interval_68846 chr16 87547969 87548805 + 0 NA TTS (ENSMUSG00000090753.1) processed_pseudogene-TTS (ENSMUSG00000090753.1) 1064 ENSMUSG00000090753.1 ENSMUSG00000090753 ENSMUST00000079114 Rpl31-ps4 processed_pseudogene Interval_43037 chr13 23411247 23413565 + 0 NA Intergenic Intergenic 11460 ENSMUSG00000036376.3 ENSMUSG00000036376 ENSMUST00000041782 Abt1 protein_coding Interval_101200 chr2 179422260 179423629 + 0 NA Intergenic Intergenic 8008 ENSMUSG00000039138.1 ENSMUSG00000039138 ENSMUST00000041998 4930591A17Rik lincRNA Interval_160807 chr8 112517516 112517787 + 0 NA Intergenic Intergenic 51924 ENSMUSG00000098075.1 ENSMUSG00000098075 ENSMUST00000182027 Gm26994 antisense Interval_7754 chr1 133448282 133449268 + 0 NA Intergenic Intergenic -24398 ENSMUSG00000070643.11 ENSMUSG00000070643 ENSMUST00000126530 Sox13 protein_coding Interval_153348 chr7 143800154 143800470 + 0 NA intron (ENSMUSG00000031090.14, intron 14 of 18) protein_coding-intron (ENSMUSG00000031090.14, intron 16 of 20) -15812 ENSMUSG00000048965.9 ENSMUSG00000048965 ENSMUST00000054048 Mrgpre protein_coding Interval_83679 chr19 3685082 3687047 + 0 NA intron (ENSMUSG00000024913.16, intron 1 of 22) protein_coding-intron (ENSMUSG00000024913.16, intron 1 of 22) 497 ENSMUSG00000024913.16 ENSMUSG00000024913 ENSMUST00000176867 Lrp5 protein_coding Interval_157381 chr8 69988948 69989259 + 0 NA intron (ENSMUSG00000036180.15, intron 1 of 12) protein_coding-intron (ENSMUSG00000036180.15, intron 1 of 12) 7281 ENSMUSG00000036180.15 ENSMUSG00000036180 ENSMUST00000211960 Gatad2a protein_coding Interval_143588 chr7 12992073 12992843 + 0 NA TTS (ENSMUSG00000030382.15) protein_coding-TTS (ENSMUSG00000030382.15) 4090 ENSMUSG00000030382.15 ENSMUSG00000030382 ENSMUST00000133977 Slc27a5 protein_coding Interval_94931 chr2 101960657 101962359 + 0 NA intron (ENSMUSG00000048058.17, intron 4 of 5) protein_coding-intron (ENSMUSG00000048058.17, intron 4 of 5) 75245 ENSMUSG00000027163.13 ENSMUSG00000027163 ENSMUST00000156799 Commd9 protein_coding Interval_28816 chr11 78497095 78498186 + 0 NA promoter-TSS (ENSMUSG00000050132.13) protein_coding-promoter-TSS (ENSMUSG00000050132.13) -2966 ENSMUSG00000017344.4 ENSMUSG00000017344 ENSMUST00000153628 Vtn protein_coding Interval_163919 chr9 28507291 28507524 + 0 NA intron (ENSMUSG00000062257.13, intron 1 of 2) protein_coding-intron (ENSMUSG00000062257.13, intron 1 of 6) 214659 ENSMUSG00000106021.1 ENSMUSG00000106021 ENSMUST00000199274 Gm44316 miRNA Interval_26627 chr11 59300336 59300850 + 0 NA Intergenic Intergenic -6337 ENSMUSG00000000126.11 ENSMUSG00000000126 ENSMUST00000108783 Wnt9a protein_coding Interval_170166 chr9 105827389 105828669 + 0 NA promoter-TSS (ENSMUSG00000043719.14) protein_coding-promoter-TSS (ENSMUSG00000043719.14) 56 ENSMUSG00000043719.14 ENSMUSG00000043719 ENSMUST00000060896 Col6a6 protein_coding Interval_164735 chr9 40877699 40879642 + 0 NA exon (ENSMUSG00000054360.4, exon 3 of 3) protein_coding-exon (ENSMUSG00000054360.4, exon 3 of 3) 4543 ENSMUSG00000054360.4 ENSMUSG00000054360 ENSMUST00000067375 Bsx protein_coding Interval_66971 chr16 38943494 38943684 + 0 NA intron (ENSMUSG00000022790.14, intron 1 of 6) protein_coding-intron (ENSMUSG00000022790.14, intron 1 of 6) 16380 ENSMUSG00000089607.1 ENSMUSG00000089607 ENSMUST00000158982 Gm22500 snRNA Interval_25054 chr11 43540256 43541205 + 0 NA intron (ENSMUSG00000044707.7, intron 1 of 1) protein_coding-intron (ENSMUSG00000044707.7, intron 2 of 5) 11484 ENSMUSG00000044707.7 ENSMUSG00000044707 ENSMUST00000152153 Ccnjl protein_coding Interval_78635 chr18 15992300 15993649 + 0 NA Intergenic Intergenic 4606 ENSMUSG00000043223.7 ENSMUSG00000043223 ENSMUST00000155839 Gm4835 processed_pseudogene Interval_23181 chr11 20389067 20389950 + 0 NA Intergenic Intergenic -53495 ENSMUSG00000078965.5 ENSMUSG00000078965 ENSMUST00000180654 Gm12033 processed_pseudogene Interval_167497 chr9 70042156 70043313 + 0 NA Intergenic Intergenic -4646 ENSMUSG00000032226.5 ENSMUSG00000032226 ENSMUST00000034751 Gcnt3 protein_coding Interval_22802 chr11 16012233 16012514 + 0 NA Intergenic Intergenic -25420 ENSMUSG00000104323.1 ENSMUSG00000104323 ENSMUST00000193500 Gm37319 TEC Interval_156310 chr8 47312222 47312938 + 0 NA intron (ENSMUSG00000038143.16, intron 7 of 7) protein_coding-intron (ENSMUSG00000038143.16, intron 1 of 4) -85414 ENSMUSG00000109606.1 ENSMUSG00000109606 ENSMUST00000211539 Gm45537 TEC Interval_72111 chr17 28096266 28097066 + 0 NA Intergenic Intergenic -16371 ENSMUSG00000117120.1 ENSMUSG00000117120 ENSMUST00000141806 Gm50238 processed_transcript Interval_149528 chr7 99355310 99356160 + 0 NA Intergenic Intergenic -2632 ENSMUSG00000070436.12 ENSMUSG00000070436 ENSMUST00000208292 Serpinh1 protein_coding Interval_32018 chr11 104488087 104488731 + 0 NA Intergenic Intergenic -3204 ENSMUSG00000083782.1 ENSMUSG00000083782 ENSMUST00000120955 Gm11660 processed_pseudogene Interval_28851 chr11 78781536 78781907 + 0 NA Intergenic Intergenic -27199 ENSMUSG00000080600.2 ENSMUSG00000080600 ENSMUST00000116950 Gm23840 miRNA Interval_26146 chr11 54752974 54753342 + 0 NA intron (ENSMUSG00000052298.12, intron 2 of 4) protein_coding-intron (ENSMUSG00000052298.12, intron 2 of 5) -6334 ENSMUSG00000082503.1 ENSMUSG00000082503 ENSMUST00000120487 Gm12229 processed_pseudogene Interval_40706 chr12 107729611 107729836 + 0 NA exon (ENSMUSG00000085641.1, exon 2 of 3) lincRNA-exon (ENSMUSG00000085641.1, exon 2 of 3) 5773 ENSMUSG00000085641.1 ENSMUSG00000085641 ENSMUST00000144556 4930465M20Rik lincRNA Interval_132762 chr5 147718485 147718915 + 0 NA intron (ENSMUSG00000029648.13, intron 1 of 12) protein_coding-intron (ENSMUSG00000029648.13, intron 1 of 11) -26816 ENSMUSG00000106845.1 ENSMUSG00000106845 ENSMUST00000202338 Gm43156 lincRNA Interval_128767 chr5 115150878 115152937 + 0 NA promoter-TSS (ENSMUSG00000048578.11) protein_coding-promoter-TSS (ENSMUSG00000048578.11) -861 ENSMUSG00000048578.11 ENSMUSG00000048578 ENSMUST00000124678 Mlec protein_coding Interval_39936 chr12 99921223 99921468 + 0 NA intron (ENSMUSG00000021177.16, intron 13 of 15) protein_coding-intron (ENSMUSG00000021177.16, intron 12 of 14) 16417 ENSMUSG00000113223.1 ENSMUSG00000113223 ENSMUST00000221445 Gm48147 unprocessed_pseudogene Interval_122266 chr5 20809893 20810692 + 0 NA intron (ENSMUSG00000039987.15, intron 3 of 7) protein_coding-intron (ENSMUSG00000039987.15, intron 3 of 17) 4202 ENSMUSG00000082716.1 ENSMUSG00000082716 ENSMUST00000118086 Rpl31-ps5 processed_pseudogene Interval_54277 chr14 67056849 67057094 + 0 NA intron (ENSMUSG00000022052.9, intron 2 of 9) protein_coding-intron (ENSMUSG00000022052.9, intron 2 of 9) -13442 ENSMUSG00000022052.9 ENSMUSG00000022052 ENSMUST00000225469 Ppp2r2a protein_coding Interval_115673 chr4 101930239 101930737 + 0 NA Intergenic Intergenic -9919 ENSMUSG00000070890.3 ENSMUSG00000070890 ENSMUST00000052027 Gm12794 protein_coding Interval_126307 chr5 86375599 86376214 + 0 NA Intergenic Intergenic 42439 ENSMUSG00000072845.3 ENSMUSG00000072845 ENSMUST00000198504 Tmprss11a protein_coding Interval_131441 chr5 137210065 137211650 + 0 NA exon (ENSMUSG00000094840.5, exon 4 of 7) protein_coding-exon (ENSMUSG00000094840.5, exon 4 of 7) 1291 ENSMUSG00000094840.5 ENSMUSG00000094840 ENSMUST00000179412 Muc3a protein_coding Interval_111917 chr4 32537139 32539186 + 0 NA intron (ENSMUSG00000040270.16, intron 2 of 4) protein_coding-intron (ENSMUSG00000040270.16, intron 4 of 7) 23375 ENSMUSG00000084611.1 ENSMUSG00000084611 ENSMUST00000122662 Gm24371 misc_RNA Interval_1322 chr1 20554214 20555040 + 0 NA intron (ENSMUSG00000043760.16, intron 22 of 66) protein_coding-intron (ENSMUSG00000043760.16, intron 22 of 66) 63437 ENSMUSG00000043760.16 ENSMUSG00000043760 ENSMUST00000128051 Pkhd1 protein_coding Interval_29676 chr11 85980264 85981007 + 0 NA Intergenic Intergenic 30140 ENSMUSG00000081632.1 ENSMUSG00000081632 ENSMUST00000118790 Gm11443 processed_pseudogene Interval_9798 chr1 162485722 162485916 + 0 NA Intergenic Intergenic 8139 ENSMUSG00000066752.4 ENSMUSG00000066752 ENSMUST00000159707 Gm10176 TEC Interval_89570 chr2 22899982 22901055 + 0 NA intron (ENSMUSG00000026784.14, intron 2 of 4) protein_coding-intron (ENSMUSG00000026784.14, intron 1 of 10) -1870 ENSMUSG00000084625.1 ENSMUSG00000084625 ENSMUST00000122676 Gm25544 snoRNA Interval_11829 chr1 186021728 186021928 + 0 NA Intergenic Intergenic 90545 ENSMUSG00000103056.1 ENSMUSG00000103056 ENSMUST00000195813 Gm38268 TEC Interval_126485 chr5 88901584 88901786 + 0 NA intron (ENSMUSG00000060961.16, intron 1 of 25) protein_coding-intron (ENSMUSG00000060961.16, intron 1 of 24) 15199 ENSMUSG00000060961.16 ENSMUSG00000060961 ENSMUST00000134303 Slc4a4 protein_coding Interval_162141 chr8 125476161 125476462 + 0 NA intron (ENSMUSG00000001995.9, intron 5 of 22) protein_coding-intron (ENSMUSG00000001995.9, intron 3 of 20) 93497 ENSMUSG00000001995.9 ENSMUSG00000001995 ENSMUST00000212604 Sipa1l2 protein_coding Interval_120752 chr4 150452353 150452596 + 0 NA intron (ENSMUSG00000039852.17, intron 4 of 22) protein_coding-intron (ENSMUSG00000039852.17, intron 4 of 22) 116070 ENSMUSG00000085213.1 ENSMUSG00000085213 ENSMUST00000128800 Gm13091 antisense Interval_134264 chr6 24105954 24106625 + 0 NA exon (ENSMUSG00000029700.11, exon 2 of 2) protein_coding-exon (ENSMUSG00000029700.11, exon 2 of 2) 2282 ENSMUSG00000029700.11 ENSMUSG00000029700 ENSMUST00000176692 Slc13a1 protein_coding Interval_123992 chr5 37060343 37060893 + 0 NA intron (ENSMUSG00000063646.18, intron 1 of 1) protein_coding-intron (ENSMUSG00000063646.18, intron 1 of 12) -18972 ENSMUSG00000097686.1 ENSMUSG00000097686 ENSMUST00000180816 Gm26647 antisense Interval_101314 chr2 180353254 180354096 + 0 NA Intergenic Intergenic -18976 ENSMUSG00000015627.5 ENSMUSG00000015627 ENSMUST00000015771 Gata5 protein_coding Interval_27063 chr11 62636048 62638203 + 0 NA intron (ENSMUSG00000085170.1, intron 2 of 3) protein_coding-intron (ENSMUSG00000046417.14, intron 1 of 3) 2421 ENSMUSG00000085170.1 ENSMUSG00000085170 ENSMUST00000142492 Lrrc75aos1 antisense Interval_113700 chr4 57726573 57727087 + 0 NA intron (ENSMUSG00000038729.24, intron 1 of 2) protein_coding-intron (ENSMUSG00000038729.24, intron 1 of 2) -35777 ENSMUSG00000089286.1 ENSMUSG00000089286 ENSMUST00000158661 Gm24277 snRNA Interval_64395 chr16 11073881 11074081 + 0 NA TTS (ENSMUSG00000022498.16) protein_coding-TTS (ENSMUSG00000022498.16) -7859 ENSMUSG00000022500.15 ENSMUSG00000022500 ENSMUST00000230709 Litaf protein_coding Interval_43602 chr13 34037008 34038949 + 0 NA TTS (ENSMUSG00000021408.15) protein_coding-TTS (ENSMUSG00000021408.15) 3452 ENSMUSG00000091462.2 ENSMUSG00000091462 ENSMUST00000163843 Gm17084 processed_pseudogene Interval_125857 chr5 75079385 75079839 + 0 NA Intergenic Intergenic 4010 ENSMUSG00000035946.7 ENSMUSG00000035946 ENSMUST00000160104 Gsx2 protein_coding Interval_171655 chr9 119976744 119977300 + 0 NA exon (ENSMUSG00000032515.8, exon 2 of 5) protein_coding-exon (ENSMUSG00000032515.8, exon 2 of 5) -6124 ENSMUSG00000111639.1 ENSMUSG00000111639 ENSMUST00000214403 1700019L13Rik antisense Interval_139630 chr6 103833650 103833936 + 0 NA Intergenic Intergenic -1215 ENSMUSG00000089091.1 ENSMUSG00000089091 ENSMUST00000158466 Gm25656 snRNA Interval_122909 chr5 27249709 27250886 + 0 NA intron (ENSMUSG00000061576.15, intron 1 of 25) protein_coding-intron (ENSMUSG00000061576.15, intron 1 of 25) 32112 ENSMUSG00000106537.1 ENSMUSG00000106537 ENSMUST00000200263 Gm43502 TEC Interval_163816 chr9 26805981 26807115 + 0 NA promoter-TSS (ENSMUSG00000036395.15) protein_coding-promoter-TSS (ENSMUSG00000036395.15) -2850 ENSMUSG00000036395.15 ENSMUSG00000036395 ENSMUST00000216272 Glb1l2 protein_coding Interval_107131 chr3 103771325 103773037 + 0 NA promoter-TSS (ENSMUSG00000085754.7) antisense-promoter-TSS (ENSMUSG00000085754.7) 229 ENSMUSG00000085754.7 ENSMUSG00000085754 ENSMUST00000152867 Gm15886 antisense Interval_74367 chr17 49529608 49530739 + 0 NA intron (ENSMUSG00000040260.8, intron 1 of 2) protein_coding-intron (ENSMUSG00000040260.8, intron 1 of 25) 34133 ENSMUSG00000040260.8 ENSMUSG00000040260 ENSMUST00000226030 Daam2 protein_coding Interval_148658 chr7 83902290 83903493 + 0 NA Intergenic Intergenic 7838 ENSMUSG00000038503.15 ENSMUSG00000038503 ENSMUST00000207373 Mesd protein_coding Interval_74653 chr17 54367243 54368052 + 0 NA intron (ENSMUSG00000099747.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000099747.1, intron 1 of 2) 2427 ENSMUSG00000099747.1 ENSMUSG00000099747 ENSMUST00000190635 1700025K24Rik lincRNA Interval_15058 chr10 42265903 42266109 + 0 NA intron (ENSMUSG00000048756.11, intron 2 of 2) protein_coding-intron (ENSMUSG00000048756.11, intron 2 of 3) -7640 ENSMUSG00000048756.11 ENSMUSG00000048756 ENSMUST00000105501 Foxo3 protein_coding Interval_102460 chr3 26920193 26921859 + 0 NA intron (ENSMUSG00000039335.11, intron 8 of 9) protein_coding-intron (ENSMUSG00000039335.11, intron 8 of 10) -91738 ENSMUSG00000103712.1 ENSMUSG00000103712 ENSMUST00000194574 Gm37659 processed_pseudogene Interval_91065 chr2 34783735 34784753 + 0 NA TTS (ENSMUSG00000070953.13) protein_coding-TTS (ENSMUSG00000070953.13) 10578 ENSMUSG00000026864.13 ENSMUSG00000026864 ENSMUST00000129333 Hspa5 protein_coding Interval_29900 chr11 87616728 87618165 + 0 NA exon (ENSMUSG00000070345.3, exon 1 of 6) protein_coding-exon (ENSMUSG00000070345.3, exon 1 of 6) 282 ENSMUSG00000070345.3 ENSMUSG00000070345 ENSMUST00000093956 Hsf5 protein_coding Interval_61655 chr15 83231910 83232253 + 0 NA intron (ENSMUSG00000047878.13, intron 1 of 2) protein_coding-intron (ENSMUSG00000047878.13, intron 1 of 2) 19648 ENSMUSG00000047878.13 ENSMUSG00000047878 ENSMUST00000229454 A4galt protein_coding Interval_107114 chr3 103653294 103653834 + 0 NA Intergenic Intergenic -7496 ENSMUSG00000087119.4 ENSMUSG00000087119 ENSMUST00000117271 Atg4a-ps protein_coding Interval_81217 chr18 56561822 56562917 + 0 NA promoter-TSS (ENSMUSG00000053644.13) protein_coding-promoter-TSS (ENSMUSG00000053644.13) -151 ENSMUSG00000053644.13 ENSMUSG00000053644 ENSMUST00000171844 Aldh7a1 protein_coding Interval_21806 chr11 4469206 4469396 + 0 NA Intergenic Intergenic 19065 ENSMUSG00000034354.17 ENSMUSG00000034354 ENSMUST00000144242 Mtmr3 protein_coding Interval_65593 chr16 23907038 23907504 + 0 NA Intergenic Intergenic -16313 ENSMUSG00000004366.4 ENSMUSG00000004366 ENSMUST00000004480 Sst protein_coding Interval_8460 chr1 139579613 139580076 + 0 NA Intergenic Intergenic -26245 ENSMUSG00000057037.8 ENSMUSG00000057037 ENSMUST00000161224 Cfhr1 protein_coding Interval_6679 chr1 118702100 118702637 + 0 NA Intergenic Intergenic 20547 ENSMUSG00000088363.1 ENSMUSG00000088363 ENSMUST00000157738 Gm23497 snRNA Interval_108054 chr3 121156116 121157015 + 0 NA exon (ENSMUSG00000028133.17, exon 1 of 2) protein_coding-exon (ENSMUSG00000028133.17, exon 1 of 2) -12091 ENSMUSG00000106329.1 ENSMUSG00000106329 ENSMUST00000199790 Gm10652 TEC Interval_36875 chr12 54871546 54871969 + 0 NA Intergenic Intergenic -8959 ENSMUSG00000062929.8 ENSMUSG00000062929 ENSMUST00000223095 Cfl2 protein_coding Interval_109394 chr3 141610533 141610907 + 0 NA intron (ENSMUSG00000059921.15, intron 1 of 15) protein_coding-intron (ENSMUSG00000059921.15, intron 1 of 16) 72180 ENSMUSG00000089924.1 ENSMUSG00000089924 ENSMUST00000160604 Gm15689 antisense Interval_165706 chr9 51213440 51213830 + 0 NA promoter-TSS (ENSMUSG00000032053.8) protein_coding-promoter-TSS (ENSMUSG00000032053.8) -2098 ENSMUSG00000111862.1 ENSMUSG00000111862 ENSMUST00000213173 Gm47828 sense_intronic Interval_33035 chr11 113792319 113792913 + 0 NA intron (ENSMUSG00000041592.16, intron 43 of 44) protein_coding-intron (ENSMUSG00000041592.16, intron 43 of 44) 17807 ENSMUSG00000041592.16 ENSMUSG00000041592 ENSMUST00000144301 Sdk2 protein_coding Interval_54615 chr14 71967100 71967837 + 0 NA Intergenic Intergenic 110766 ENSMUSG00000115304.1 ENSMUSG00000115304 ENSMUST00000228197 4930434J06Rik lincRNA Interval_65961 chr16 30559220 30560333 + 0 NA TTS (ENSMUSG00000022538.20) protein_coding-TTS (ENSMUSG00000022538.20) 15467 ENSMUSG00000022538.20 ENSMUSG00000022538 ENSMUST00000129004 Lsg1 protein_coding Interval_20150 chr10 115280314 115281102 + 0 NA Intergenic Intergenic 10730 ENSMUSG00000111964.1 ENSMUSG00000111964 ENSMUST00000217892 Gm8942 processed_pseudogene Interval_71046 chr17 17405098 17405296 + 0 NA intron (ENSMUSG00000047786.12, intron 1 of 5) protein_coding-intron (ENSMUSG00000047786.12, intron 1 of 5) 6796 ENSMUSG00000097379.2 ENSMUSG00000097379 ENSMUST00000181390 Gm26873 antisense Interval_136628 chr6 56804444 56805120 + 0 NA Intergenic Intergenic 7191 ENSMUSG00000108080.1 ENSMUSG00000108080 ENSMUST00000203397 Gm10209 TEC Interval_160325 chr8 108392833 108393263 + 0 NA intron (ENSMUSG00000038872.10, intron 3 of 15) protein_coding-intron (ENSMUSG00000038872.10, intron 3 of 15) 144173 ENSMUSG00000109868.1 ENSMUSG00000109868 ENSMUST00000211262 Gm39244 lincRNA Interval_92070 chr2 52979363 52980562 + 0 NA intron (ENSMUSG00000036053.17, intron 1 of 26) protein_coding-intron (ENSMUSG00000036053.17, intron 1 of 26) 122102 ENSMUSG00000036053.17 ENSMUSG00000036053 ENSMUST00000050719 Fmnl2 protein_coding Interval_111189 chr4 14543855 14544793 + 0 NA intron (ENSMUSG00000040569.13, intron 8 of 18) protein_coding-intron (ENSMUSG00000040569.13, intron 8 of 18) 77173 ENSMUSG00000040569.13 ENSMUSG00000040569 ENSMUST00000143105 Slc26a7 protein_coding Interval_89413 chr2 20546455 20547706 + 0 NA promoter-TSS (ENSMUSG00000036617.17) protein_coding-promoter-TSS (ENSMUSG00000036617.17) -12724 ENSMUSG00000098575.1 ENSMUSG00000098575 ENSMUST00000183963 Gm27446 misc_RNA Interval_70631 chr17 12537623 12537886 + 0 NA Intergenic Intergenic -30338 ENSMUSG00000023828.3 ENSMUSG00000023828 ENSMUST00000024595 Slc22a3 protein_coding Interval_30876 chr11 97018011 97019650 + 0 NA promoter-TSS (ENSMUSG00000038560.7) protein_coding-promoter-TSS (ENSMUSG00000038560.7) 97 ENSMUSG00000038560.7 ENSMUSG00000038560 ENSMUST00000107622 Sp6 protein_coding Interval_79145 chr18 24965351 24965748 + 0 NA intron (ENSMUSG00000034295.10, intron 5 of 24) protein_coding-intron (ENSMUSG00000034295.10, intron 5 of 26) 203145 ENSMUSG00000024269.11 ENSMUSG00000024269 ENSMUST00000115817 Tpgs2 protein_coding Interval_110438 chr3 158164185 158165252 + 0 NA intron (ENSMUSG00000028176.13, intron 18 of 24) protein_coding-intron (ENSMUSG00000028176.13, intron 19 of 27) -15518 ENSMUSG00000106043.1 ENSMUSG00000106043 ENSMUST00000198578 Gm42968 TEC Interval_126104 chr5 77407287 77408301 + 0 NA exon (ENSMUSG00000036256.13, exon 1 of 5) protein_coding-exon (ENSMUSG00000036256.13, exon 1 of 5) 246 ENSMUSG00000036256.13 ENSMUSG00000036256 ENSMUST00000163898 Igfbp7 protein_coding Interval_78827 chr18 20837239 20837512 + 0 NA intron (ENSMUSG00000033382.15, intron 19 of 28) protein_coding-intron (ENSMUSG00000033382.15, intron 19 of 28) 7217 ENSMUSG00000088549.1 ENSMUSG00000088549 ENSMUST00000157924 Gm24959 snRNA Interval_93051 chr2 69828272 69828462 + 0 NA intron (ENSMUSG00000042155.3, intron 2 of 3) protein_coding-intron (ENSMUSG00000042155.3, intron 2 of 3) 4013 ENSMUSG00000042155.3 ENSMUSG00000042155 ENSMUST00000152898 Klhl23 protein_coding Interval_122221 chr5 20266232 20266449 + 0 NA intron (ENSMUSG00000040003.18, intron 2 of 15) protein_coding-intron (ENSMUSG00000040003.18, intron 6 of 22) 1999 ENSMUSG00000087768.1 ENSMUSG00000087768 ENSMUST00000157143 Gm22755 snRNA Interval_68733 chr16 85160343 85160886 + 0 NA intron (ENSMUSG00000022892.11, intron 1 of 13) protein_coding-intron (ENSMUSG00000022892.11, intron 1 of 15) -8235 ENSMUSG00000098604.1 ENSMUSG00000098604 ENSMUST00000184264 Gm27295 snoRNA Interval_6868 chr1 120229377 120229824 + 0 NA intron (ENSMUSG00000026389.16, intron 5 of 5) protein_coding-intron (ENSMUSG00000026389.16, intron 4 of 4) 35655 ENSMUSG00000026389.16 ENSMUSG00000026389 ENSMUST00000112643 Steap3 protein_coding Interval_143584 chr7 12970659 12972012 + 0 NA TTS (ENSMUSG00000004500.9) protein_coding-TTS (ENSMUSG00000004500.9) 5232 ENSMUSG00000004500.9 ENSMUSG00000004500 ENSMUST00000210619 Zfp324 protein_coding Interval_163567 chr9 22248694 22248899 + 0 NA exon (ENSMUSG00000062794.8, exon 5 of 5) protein_coding-exon (ENSMUSG00000062794.8, exon 5 of 5) 11099 ENSMUSG00000062794.8 ENSMUSG00000062794 ENSMUST00000086281 Zfp599 protein_coding Interval_95624 chr2 113000168 113000454 + 0 NA intron (ENSMUSG00000057378.15, intron 1 of 1) protein_coding-intron (ENSMUSG00000057378.15, intron 2 of 102) -285421 ENSMUSG00000041255.2 ENSMUSG00000041255 ENSMUST00000040856 Tmco5b protein_coding Interval_50961 chr14 21143121 21144330 + 0 NA intron (ENSMUSG00000039197.10, intron 3 of 6) protein_coding-intron (ENSMUSG00000039197.10, intron 3 of 10) 91108 ENSMUSG00000039197.10 ENSMUSG00000039197 ENSMUST00000224974 Adk protein_coding Interval_146704 chr7 49560162 49560409 + 0 NA intron (ENSMUSG00000052512.17, intron 19 of 38) protein_coding-intron (ENSMUSG00000052512.17, intron 19 of 37) 76564 ENSMUSG00000030507.6 ENSMUSG00000030507 ENSMUST00000032717 Dbx1 protein_coding Interval_39152 chr12 85472074 85474950 + 0 NA promoter-TSS (ENSMUSG00000021250.13) protein_coding-promoter-TSS (ENSMUSG00000021250.13) -1179 ENSMUSG00000021250.13 ENSMUSG00000021250 ENSMUST00000134311 Fos protein_coding Interval_166923 chr9 63958254 63960809 + 0 NA intron (ENSMUSG00000036867.7, intron 3 of 3) protein_coding-intron (ENSMUSG00000036867.7, intron 3 of 3) -31782 ENSMUSG00000111058.1 ENSMUSG00000111058 ENSMUST00000214827 Gm36033 lincRNA Interval_85941 chr19 33661248 33661784 + 0 NA intron (ENSMUSG00000024766.15, intron 1 of 10) protein_coding-intron (ENSMUSG00000024766.15, intron 1 of 10) 6947 ENSMUSG00000118360.1 ENSMUSG00000118360 ENSMUST00000237953 Gm19755 processed_pseudogene Interval_150121 chr7 106988563 106989130 + 0 NA intron (ENSMUSG00000109246.2, intron 1 of 1) unprocessed_pseudogene-intron (ENSMUSG00000109246.2, intron 1 of 1) 820 ENSMUSG00000109246.2 ENSMUSG00000109246 ENSMUST00000207690 Olfr712-ps1 unprocessed_pseudogene Interval_61726 chr15 83607148 83608105 + 0 NA intron (ENSMUSG00000016763.15, intron 5 of 5) protein_coding-intron (ENSMUSG00000016763.15, intron 22 of 22) 6113 ENSMUSG00000016763.15 ENSMUSG00000016763 ENSMUST00000229057 Scube1 protein_coding Interval_168637 chr9 84766125 84766647 + 0 NA Intergenic Intergenic -8021 ENSMUSG00000099724.2 ENSMUSG00000099724 ENSMUST00000216019 4930554C24Rik lincRNA Interval_154832 chr8 24043145 24045535 + 0 NA intron (ENSMUSG00000037492.16, intron 6 of 7) protein_coding-intron (ENSMUSG00000037492.16, intron 6 of 6) -129564 ENSMUSG00000053979.4 ENSMUSG00000053979 ENSMUST00000066740 A730045E13Rik lincRNA Interval_130373 chr5 127007765 127008010 + 0 NA Intergenic Intergenic -12340 ENSMUSG00000105782.1 ENSMUSG00000105782 ENSMUST00000197355 Gm42955 TEC Interval_10452 chr1 170977610 170979881 + 0 NA TTS (ENSMUSG00000103676.1) antisense-TTS (ENSMUSG00000103676.1) -2618 ENSMUSG00000026656.15 ENSMUSG00000026656 ENSMUST00000161730 Fcgr2b protein_coding Interval_147502 chr7 67791379 67791665 + 0 NA intron (ENSMUSG00000097697.2, intron 1 of 3) lincRNA-intron (ENSMUSG00000097697.2, intron 1 of 2) -7741 ENSMUSG00000097981.1 ENSMUSG00000097981 ENSMUST00000182941 Gm7583 processed_pseudogene Interval_115658 chr4 101759866 101760084 + 0 NA intron (ENSMUSG00000057722.17, intron 7 of 18) protein_coding-intron (ENSMUSG00000057722.17, intron 7 of 18) -11393 ENSMUSG00000057722.17 ENSMUSG00000057722 ENSMUST00000151733 Lepr protein_coding Interval_16529 chr10 63381617 63383130 + 0 NA promoter-TSS (ENSMUSG00000020063.16) protein_coding-promoter-TSS (ENSMUSG00000020063.16) -4198 ENSMUSG00000036764.12 ENSMUSG00000036764 ENSMUST00000136832 Dnajc12 protein_coding Interval_88459 chr2 5304870 5305490 + 0 NA intron (ENSMUSG00000039145.16, intron 8 of 10) protein_coding-intron (ENSMUSG00000039145.16, intron 8 of 10) 21530 ENSMUSG00000080820.1 ENSMUSG00000080820 ENSMUST00000117204 Gm13197 processed_pseudogene Interval_155272 chr8 29793167 29793583 + 0 NA Intergenic Intergenic 288585 ENSMUSG00000109597.1 ENSMUSG00000109597 ENSMUST00000211611 Gm45492 processed_pseudogene Interval_130068 chr5 124056335 124057678 + 0 NA intron (ENSMUSG00000106261.1, intron 3 of 4) lincRNA-intron (ENSMUSG00000106261.1, intron 3 of 4) -4654 ENSMUSG00000104818.1 ENSMUSG00000104818 ENSMUST00000199099 Gm43661 lincRNA Interval_65589 chr16 23777228 23777506 + 0 NA Intergenic Intergenic 2760 ENSMUSG00000116467.1 ENSMUSG00000116467 ENSMUST00000231073 Gm49515 processed_pseudogene Interval_8408 chr1 138947140 138947481 + 0 NA Intergenic Intergenic 15593 ENSMUSG00000102365.1 ENSMUSG00000102365 ENSMUST00000192016 Gm37045 TEC Interval_118092 chr4 128917839 128918321 + 0 NA Intergenic Intergenic -17925 ENSMUSG00000085961.1 ENSMUSG00000085961 ENSMUST00000154515 Gm15904 antisense Interval_57633 chr15 12961260 12963672 + 0 NA Intergenic Intergenic 6744 ENSMUSG00000115807.1 ENSMUSG00000115807 ENSMUST00000226269 Gm49100 unprocessed_pseudogene Interval_172779 chrX 48622781 48624247 + 0 NA promoter-TSS (ENSMUSG00000031105.16) protein_coding-promoter-TSS (ENSMUSG00000031105.16) -448 ENSMUSG00000031105.16 ENSMUSG00000031105 ENSMUST00000177710 Slc25a14 protein_coding Interval_27898 chr11 70710557 70710742 + 0 NA intron (ENSMUSG00000020821.17, intron 16 of 22) protein_coding-intron (ENSMUSG00000020821.17, intron 15 of 21) 4659 ENSMUSG00000105932.1 ENSMUSG00000105932 ENSMUST00000197857 Mir6925 miRNA Interval_143874 chr7 16874314 16875721 + 0 NA promoter-TSS (ENSMUSG00000078794.4) protein_coding-promoter-TSS (ENSMUSG00000078794.4) -131 ENSMUSG00000097842.2 ENSMUSG00000097842 ENSMUST00000205647 9330104G04Rik lincRNA Interval_129558 chr5 120918848 120919121 + 0 NA intron (ENSMUSG00000032623.9, intron 3 of 5) protein_coding-intron (ENSMUSG00000032623.9, intron 3 of 5) 4448 ENSMUSG00000032623.9 ENSMUSG00000032623 ENSMUST00000044224 Oas1d protein_coding Interval_78305 chr18 11865559 11865777 + 0 NA intron (ENSMUSG00000040957.15, intron 1 of 8) protein_coding-intron (ENSMUSG00000040957.15, intron 1 of 8) 21368 ENSMUSG00000040957.15 ENSMUSG00000040957 ENSMUST00000225430 Cables1 protein_coding Interval_89274 chr2 18718439 18718690 + 0 NA intron (ENSMUSG00000037708.16, intron 3 of 3) protein_coding-intron (ENSMUSG00000037708.16, intron 4 of 10) 19480 ENSMUSG00000037708.16 ENSMUSG00000037708 ENSMUST00000173763 Spag6 protein_coding Interval_65887 chr16 30062882 30065422 + 0 NA promoter-TSS (ENSMUSG00000022528.8) protein_coding-promoter-TSS (ENSMUSG00000022528.8) -2186 ENSMUSG00000022528.8 ENSMUSG00000022528 ENSMUST00000161839 Hes1 protein_coding Interval_89037 chr2 14874137 14874789 + 0 NA promoter-TSS (ENSMUSG00000057914.15) protein_coding-promoter-TSS (ENSMUSG00000057914.15) 42 ENSMUSG00000057914.15 ENSMUSG00000057914 ENSMUST00000144423 Cacnb2 protein_coding Interval_36057 chr12 34219435 34221513 + 0 NA intron (ENSMUSG00000004698.11, intron 21 of 26) protein_coding-intron (ENSMUSG00000004698.11, intron 18 of 24) 70661 ENSMUSG00000113756.1 ENSMUSG00000113756 ENSMUST00000221733 Gm18025 processed_pseudogene Interval_123140 chr5 30049816 30050299 + 0 NA Intergenic Intergenic 23519 ENSMUSG00000025747.12 ENSMUSG00000025747 ENSMUST00000138520 Tyms protein_coding Interval_29549 chr11 84844536 84845483 + 0 NA intron (ENSMUSG00000020530.14, intron 6 of 13) protein_coding-intron (ENSMUSG00000020530.14, intron 7 of 14) 15831 ENSMUSG00000086799.1 ENSMUSG00000086799 ENSMUST00000126016 4930502E09Rik processed_transcript Interval_26834 chr11 60941288 60941718 + 0 NA promoter-TSS (ENSMUSG00000018932.9) protein_coding-promoter-TSS (ENSMUSG00000018932.9) 9449 ENSMUSG00000018932.9 ENSMUSG00000018932 ENSMUST00000137609 Map2k3 protein_coding Interval_14711 chr10 39233101 39234364 + 0 NA Intergenic Intergenic -11314 ENSMUSG00000111008.1 ENSMUSG00000111008 ENSMUST00000213973 Gm31562 lincRNA Interval_16064 chr10 60447353 60447737 + 0 NA intron (ENSMUSG00000012819.15, intron 12 of 65) protein_coding-intron (ENSMUSG00000012819.15, intron 12 of 66) 47641 ENSMUSG00000090439.3 ENSMUSG00000090439 ENSMUST00000218360 Gm17455 protein_coding Interval_61853 chr15 84680501 84681938 + 0 NA exon (ENSMUSG00000036106.15, exon 1 of 8) protein_coding-exon (ENSMUSG00000036106.15, exon 1 of 8) 11599 ENSMUSG00000036106.15 ENSMUSG00000036106 ENSMUST00000065499 Prr5 protein_coding Interval_154710 chr8 22766975 22767953 + 0 NA intron (ENSMUSG00000031538.6, intron 2 of 5) protein_coding-intron (ENSMUSG00000031538.6, intron 2 of 13) 9669 ENSMUSG00000031538.6 ENSMUSG00000031538 ENSMUST00000211033 Plat protein_coding Interval_147537 chr7 68160561 68160757 + 0 NA intron (ENSMUSG00000005533.10, intron 1 of 6) protein_coding-intron (ENSMUSG00000005533.10, intron 2 of 20) -51179 ENSMUSG00000005533.10 ENSMUSG00000005533 ENSMUST00000208871 Igf1r protein_coding Interval_115503 chr4 99559259 99559663 + 0 NA Intergenic Intergenic -10039 ENSMUSG00000087332.1 ENSMUSG00000087332 ENSMUST00000132108 Gm12690 lincRNA Interval_140229 chr6 115692711 115693488 + 0 NA Intergenic Intergenic 17131 ENSMUSG00000107994.1 ENSMUSG00000107994 ENSMUST00000203121 D830050J10Rik bidirectional_promoter_lncRNA Interval_52572 chr14 47576794 47577058 + 0 NA Intergenic Intergenic 7400 ENSMUSG00000115571.1 ENSMUSG00000115571 ENSMUST00000228790 Gm6616 processed_pseudogene Interval_144441 chr7 25187606 25188680 + 0 NA Intergenic Intergenic 29582 ENSMUSG00000098325.1 ENSMUSG00000098325 ENSMUST00000184632 Mir7048 miRNA Interval_163450 chr9 21496373 21497619 + 0 NA promoter-TSS (ENSMUSG00000065547.1) miRNA-promoter-TSS (ENSMUSG00000065547.1) -432 ENSMUSG00000065547.1 ENSMUSG00000065547 ENSMUST00000083613 Mir199a-1 miRNA Interval_60009 chr15 63771689 63772047 + 0 NA Intergenic Intergenic 11707 ENSMUSG00000115682.1 ENSMUSG00000115682 ENSMUST00000226151 Gm46499 processed_pseudogene Interval_138436 chr6 88196414 88196848 + 0 NA intron (ENSMUSG00000015053.14, intron 1 of 5) protein_coding-intron (ENSMUSG00000015053.14, intron 1 of 5) -4288 ENSMUSG00000015053.14 ENSMUSG00000015053 ENSMUST00000203579 Gata2 protein_coding Interval_12930 chr10 8270358 8271448 + 0 NA intron (ENSMUSG00000047712.8, intron 2 of 6) protein_coding-intron (ENSMUSG00000047712.8, intron 5 of 7) 31339 ENSMUSG00000047712.8 ENSMUSG00000047712 ENSMUST00000061601 Ust protein_coding Interval_89654 chr2 24048523 24048831 + 0 NA intron (ENSMUSG00000026986.14, intron 2 of 6) protein_coding-intron (ENSMUSG00000026986.14, intron 2 of 6) 402 ENSMUSG00000026986.14 ENSMUSG00000026986 ENSMUST00000114497 Hnmt protein_coding Interval_75117 chr17 63611585 63612400 + 0 NA Intergenic Intergenic 10264 ENSMUSG00000117225.1 ENSMUSG00000117225 ENSMUST00000233876 Gm49862 processed_pseudogene Interval_103459 chr3 41741794 41742924 + 0 NA promoter-TSS (ENSMUSG00000025766.14) protein_coding-promoter-TSS (ENSMUSG00000025766.14) 46 ENSMUSG00000059834.12 ENSMUSG00000059834 ENSMUST00000191629 Sclt1 protein_coding Interval_140268 chr6 115931325 115933034 + 0 NA promoter-TSS (ENSMUSG00000030324.8) protein_coding-promoter-TSS (ENSMUSG00000030324.8) -377 ENSMUSG00000030324.8 ENSMUSG00000030324 ENSMUST00000203323 Rho protein_coding Interval_81507 chr18 61256672 61260110 + 0 NA TTS (ENSMUSG00000091957.3) transcribed_processed_pseudogene-TTS (ENSMUSG00000091957.3) 1581 ENSMUSG00000091957.3 ENSMUSG00000091957 ENSMUST00000076842 Rps2-ps10 transcribed_processed_pseudogene Interval_47494 chr13 85400630 85400982 + 0 NA Intergenic Intergenic 11113 ENSMUSG00000103196.1 ENSMUSG00000103196 ENSMUST00000193837 Gm37641 TEC Interval_78713 chr18 18664577 18664940 + 0 NA Intergenic Intergenic -420601 ENSMUSG00000117574.1 ENSMUSG00000117574 ENSMUST00000234831 Gm50084 lincRNA Interval_134065 chr6 18585894 18587727 + 0 NA Intergenic Intergenic -137470 ENSMUSG00000093271.1 ENSMUSG00000093271 ENSMUST00000175530 Gm26233 miRNA Interval_126108 chr5 77433256 77434487 + 0 NA promoter-TSS (ENSMUSG00000106906.1) lincRNA-promoter-TSS (ENSMUSG00000106906.1) -163 ENSMUSG00000106906.1 ENSMUSG00000106906 ENSMUST00000201510 Gm34728 lincRNA Interval_79702 chr18 34598035 34600364 + 0 NA TTS (ENSMUSG00000003778.14) protein_coding-TTS (ENSMUSG00000003778.14) -1854 ENSMUSG00000049357.11 ENSMUSG00000049357 ENSMUST00000129566 Brd8dc protein_coding Interval_45163 chr13 52875510 52876441 + 0 NA intron (ENSMUSG00000021460.17, intron 5 of 9) protein_coding-intron (ENSMUSG00000021460.17, intron 6 of 9) 36971 ENSMUSG00000021460.17 ENSMUSG00000021460 ENSMUST00000151469 Auh protein_coding Interval_54094 chr14 65245195 65245982 + 0 NA intron (ENSMUSG00000007989.7, intron 2 of 6) protein_coding-intron (ENSMUSG00000007989.7, intron 2 of 6) 16875 ENSMUSG00000007989.7 ENSMUSG00000007989 ENSMUST00000127272 Fzd3 protein_coding Interval_125153 chr5 64938155 64938538 + 0 NA Intergenic Intergenic -4783 ENSMUSG00000044827.10 ENSMUSG00000044827 ENSMUST00000197886 Tlr1 protein_coding Interval_139186 chr6 97028148 97028695 + 0 NA intron (ENSMUSG00000046500.8, intron 1 of 5) protein_coding-intron (ENSMUSG00000046500.8, intron 1 of 5) 31972 ENSMUSG00000046500.8 ENSMUSG00000046500 ENSMUST00000203930 Tafa4 protein_coding Interval_157863 chr8 75054500 75055300 + 0 NA TTS (ENSMUSG00000042870.15) protein_coding-TTS (ENSMUSG00000042870.15) -9654 ENSMUSG00000110433.1 ENSMUSG00000110433 ENSMUST00000212068 Gm45820 antisense Interval_159452 chr8 94820664 94821070 + 0 NA exon (ENSMUSG00000031781.14, exon 9 of 9) protein_coding-exon (ENSMUSG00000031781.14, exon 9 of 9) 10414 ENSMUSG00000031780.2 ENSMUSG00000031780 ENSMUST00000034232 Ccl17 protein_coding Interval_26108 chr11 54327052 54327806 + 0 NA intron (ENSMUSG00000020333.17, intron 6 of 11) protein_coding-intron (ENSMUSG00000020333.17, intron 7 of 19) 7277 ENSMUSG00000020333.17 ENSMUSG00000020333 ENSMUST00000139484 Acsl6 protein_coding Interval_145966 chr7 42714765 42716139 + 0 NA intron (ENSMUSG00000091594.2, intron 1 of 3) protein_coding-intron (ENSMUSG00000091594.2, intron 1 of 3) -9083 ENSMUSG00000091594.2 ENSMUSG00000091594 ENSMUST00000180131 Gm17067 protein_coding Interval_126081 chr5 77259264 77260718 + 0 NA Intergenic Intergenic -6205 ENSMUSG00000029249.15 ENSMUSG00000029249 ENSMUST00000113449 Rest protein_coding Interval_35842 chr12 31123067 31123253 + 0 NA Intergenic Intergenic -19600 ENSMUSG00000095953.3 ENSMUSG00000095953 ENSMUST00000179160 6030469F06Rik processed_transcript Interval_3341 chr1 57268835 57270256 + 0 NA Intergenic Intergenic 22856 ENSMUSG00000101129.1 ENSMUSG00000101129 ENSMUST00000188353 Gm5254 processed_pseudogene Interval_7317 chr1 128832115 128833282 + 0 NA Intergenic Intergenic 53321 ENSMUSG00000064737.1 ENSMUSG00000064737 ENSMUST00000082803 Gm23056 snRNA Interval_79802 chr18 35185816 35186658 + 0 NA intron (ENSMUSG00000037815.7, intron 5 of 15) protein_coding-intron (ENSMUSG00000037815.7, intron 7 of 17) 28787 ENSMUSG00000071862.3 ENSMUSG00000071862 ENSMUST00000236680 Lrrtm2 protein_coding Interval_98298 chr2 150872594 150873195 + 0 NA intron (ENSMUSG00000032046.15, intron 1 of 12) protein_coding-intron (ENSMUSG00000032046.15, intron 1 of 12) -10829 ENSMUSG00000087887.1 ENSMUSG00000087887 ENSMUST00000157262 Gm23598 snoRNA Interval_156772 chr8 58860207 58860424 + 0 NA intron (ENSMUSG00000096914.3, intron 2 of 12) protein_coding-intron (ENSMUSG00000096914.3, intron 1 of 3) -51942 ENSMUSG00000049946.7 ENSMUSG00000049946 ENSMUST00000160055 BC030500 protein_coding Interval_76314 chr17 78984246 78984619 + 0 NA intron (ENSMUSG00000024070.15, intron 3 of 18) protein_coding-intron (ENSMUSG00000024070.15, intron 2 of 17) 36384 ENSMUSG00000024070.15 ENSMUSG00000024070 ENSMUST00000130070 Prkd3 protein_coding Interval_171523 chr9 119015102 119015315 + 0 NA intron (ENSMUSG00000047409.13, intron 2 of 6) protein_coding-intron (ENSMUSG00000047409.13, intron 2 of 7) -16588 ENSMUSG00000065513.1 ENSMUSG00000065513 ENSMUST00000083579 Mir26a-1 miRNA Interval_118748 chr4 133508351 133508845 + 0 NA Intergenic Intergenic -10048 ENSMUSG00000056596.8 ENSMUSG00000056596 ENSMUST00000123169 Trnp1 protein_coding Interval_70237 chr17 7163557 7163871 + 0 NA Intergenic Intergenic -6413 ENSMUSG00000023809.10 ENSMUSG00000023809 ENSMUST00000231530 Rps6ka2 protein_coding Interval_168722 chr9 86368209 86368402 + 0 NA intron (ENSMUSG00000032415.14, intron 7 of 7) protein_coding-intron (ENSMUSG00000032415.14, intron 9 of 9) -51621 ENSMUSG00000083731.1 ENSMUSG00000083731 ENSMUST00000117532 Gm16202 processed_pseudogene Interval_84235 chr19 8940298 8942650 + 0 NA promoter-TSS (ENSMUSG00000071646.9) protein_coding-promoter-TSS (ENSMUSG00000071646.9) -610 ENSMUSG00000114220.1 ENSMUSG00000114220 ENSMUST00000225181 Gm10353 antisense Interval_159762 chr8 101546784 101547244 + 0 NA Intergenic Intergenic -7306 ENSMUSG00000087985.1 ENSMUSG00000087985 ENSMUST00000157360 Gm22223 snoRNA Interval_90033 chr2 27425129 27428322 + 0 NA exon (ENSMUSG00000009621.18, exon 1 of 28) protein_coding-exon (ENSMUSG00000009621.18, exon 1 of 28) 187 ENSMUSG00000009621.18 ENSMUSG00000009621 ENSMUST00000132642 Vav2 protein_coding Interval_12295 chr1 191485271 191485484 + 0 NA Intergenic Intergenic 8046 ENSMUSG00000104341.1 ENSMUSG00000104341 ENSMUST00000195195 Gm37688 processed_pseudogene Interval_81802 chr18 64894147 64894907 + 0 NA intron (ENSMUSG00000024589.18, intron 1 of 30) protein_coding-intron (ENSMUSG00000024589.18, intron 1 of 29) -6036 ENSMUSG00000114210.2 ENSMUSG00000114210 ENSMUST00000224731 A330084C13Rik antisense Interval_72038 chr17 27672082 27672300 + 0 NA intron (ENSMUSG00000040276.15, intron 1 of 9) protein_coding-intron (ENSMUSG00000040276.15, intron 1 of 9) 16603 ENSMUSG00000040276.15 ENSMUSG00000040276 ENSMUST00000231854 Pacsin1 protein_coding Interval_59898 chr15 61184233 61184756 + 0 NA intron (ENSMUSG00000116000.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000116000.1, intron 1 of 2) 343 ENSMUSG00000116000.1 ENSMUSG00000116000 ENSMUST00000229129 Gm49497 lincRNA Interval_22907 chr11 17269596 17270184 + 0 NA TTS (ENSMUSG00000000581.8) protein_coding-TTS (ENSMUSG00000000581.8) 12202 ENSMUSG00000000581.8 ENSMUSG00000000581 ENSMUST00000130330 C1d protein_coding Interval_169329 chr9 96455454 96456464 + 0 NA Intergenic Intergenic -6614 ENSMUSG00000118397.1 ENSMUSG00000118397 ENSMUST00000238558 Gm50488 unitary_pseudogene Interval_32738 chr11 110234468 110234697 + 0 NA intron (ENSMUSG00000044749.13, intron 8 of 38) protein_coding-intron (ENSMUSG00000044749.13, intron 8 of 38) 17194 ENSMUSG00000044749.13 ENSMUSG00000044749 ENSMUST00000150988 Abca6 protein_coding Interval_16648 chr10 66813973 66815073 + 0 NA intron (ENSMUSG00000112425.1, intron 2 of 2) lincRNA-intron (ENSMUSG00000112425.1, intron 2 of 2) 4683 ENSMUSG00000112425.1 ENSMUSG00000112425 ENSMUST00000220426 Gm47896 lincRNA Interval_15677 chr10 53454390 53455106 + 0 NA Intergenic Intergenic -20216 ENSMUSG00000056219.7 ENSMUSG00000056219 ENSMUST00000168554 Tmem229b-ps processed_pseudogene Interval_119428 chr4 137587448 137587641 + 0 NA Intergenic Intergenic -5440 ENSMUSG00000094035.3 ENSMUSG00000094035 ENSMUST00000238941 Ldlrad2 protein_coding Interval_85364 chr19 25223520 25223945 + 0 NA Intergenic Intergenic -57516 ENSMUSG00000065634.1 ENSMUSG00000065634 ENSMUST00000083700 Gm24252 snoRNA Interval_56564 chr14 120362354 120363880 + 0 NA intron (ENSMUSG00000022139.17, intron 2 of 2) protein_coding-intron (ENSMUSG00000022139.17, intron 2 of 8) -16124 ENSMUSG00000022139.17 ENSMUSG00000022139 ENSMUST00000227153 Mbnl2 protein_coding Interval_95425 chr2 109158930 109159374 + 0 NA intron (ENSMUSG00000057234.9, intron 3 of 4) protein_coding-intron (ENSMUSG00000057234.9, intron 3 of 5) -10454 ENSMUSG00000076987.1 ENSMUSG00000076987 ENSMUST00000103799 Gm24115 miRNA Interval_121756 chr5 6976891 6977087 + 0 NA intron (ENSMUSG00000092094.5, intron 1 of 3) protein_coding-intron (ENSMUSG00000092094.5, intron 1 of 3) 200867 ENSMUSG00000064851.1 ENSMUSG00000064851 ENSMUST00000082917 Gm24525 snRNA Interval_13913 chr10 24609715 24610051 + 0 NA Intergenic Intergenic 14157 ENSMUSG00000019997.11 ENSMUSG00000019997 ENSMUST00000129142 Ccn2 protein_coding Interval_113461 chr4 55134450 55136766 + 0 NA promoter-TSS (ENSMUSG00000087614.1) lincRNA-promoter-TSS (ENSMUSG00000087614.1) 19045 ENSMUSG00000082704.1 ENSMUSG00000082704 ENSMUST00000120116 Gm12515 processed_pseudogene Interval_68023 chr16 64002453 64003138 + 0 NA Intergenic Intergenic -47665 ENSMUSG00000116722.1 ENSMUSG00000116722 ENSMUST00000231945 Gm49627 processed_pseudogene Interval_88393 chr2 4706016 4706451 + 0 NA Intergenic Intergenic 5995 ENSMUSG00000083378.3 ENSMUSG00000083378 ENSMUST00000118297 Gm13196 processed_pseudogene Interval_169143 chr9 94235118 94235458 + 0 NA Intergenic Intergenic -49208 ENSMUSG00000064889.1 ENSMUSG00000064889 ENSMUST00000082955 Gm24200 snRNA Interval_20603 chr10 119339828 119340719 + 0 NA Intergenic Intergenic -2219 ENSMUSG00000112199.1 ENSMUSG00000112199 ENSMUST00000218187 Gm19090 processed_pseudogene Interval_108263 chr3 123114198 123114458 + 0 NA exon (ENSMUSG00000050315.14, exon 2 of 2) protein_coding-exon (ENSMUSG00000050315.14, exon 2 of 2) -27960 ENSMUSG00000106012.1 ENSMUSG00000106012 ENSMUST00000196387 Gm43744 processed_pseudogene Interval_121705 chr5 5507690 5508468 + 0 NA TTS (ENSMUSG00000046798.14) protein_coding-TTS (ENSMUSG00000046798.14) 6833 ENSMUSG00000046798.14 ENSMUSG00000046798 ENSMUST00000134157 Cldn12 protein_coding Interval_76686 chr17 83482809 83483678 + 0 NA Intergenic Intergenic 21263 ENSMUSG00000024248.14 ENSMUSG00000024248 ENSMUST00000234258 Cox7a2l protein_coding Interval_17472 chr10 77119330 77119725 + 0 NA intron (ENSMUSG00000001435.15, intron 2 of 41) protein_coding-intron (ENSMUSG00000001435.15, intron 2 of 41) -17573 ENSMUSG00000112612.1 ENSMUSG00000112612 ENSMUST00000218871 Gm7775 processed_pseudogene Interval_48885 chr13 104351218 104351411 + 0 NA intron (ENSMUSG00000046169.10, intron 8 of 24) protein_coding-intron (ENSMUSG00000046169.10, intron 8 of 24) 63479 ENSMUSG00000046169.10 ENSMUSG00000046169 ENSMUST00000224504 Adamts6 protein_coding Interval_16978 chr10 70260785 70261020 + 0 NA intron (ENSMUSG00000037762.6, intron 2 of 5) protein_coding-intron (ENSMUSG00000037762.6, intron 2 of 5) -6077 ENSMUSG00000037762.6 ENSMUSG00000037762 ENSMUST00000155933 Slc16a9 protein_coding Interval_22984 chr11 18444160 18444640 + 0 NA Intergenic Intergenic 8158 ENSMUSG00000102178.1 ENSMUSG00000102178 ENSMUST00000193385 Gm37869 TEC Interval_65721 chr16 25967205 25967483 + 0 NA intron (ENSMUSG00000038168.5, intron 13 of 14) protein_coding-intron (ENSMUSG00000038168.5, intron 13 of 14) 10869 ENSMUSG00000090257.1 ENSMUSG00000090257 ENSMUST00000161614 Gm4524 antisense Interval_85868 chr19 32532101 32532310 + 0 NA Intergenic Intergenic -11143 ENSMUSG00000118168.1 ENSMUSG00000118168 ENSMUST00000237957 Gm36419 lincRNA Interval_56192 chr14 111696840 111697090 + 0 NA Intergenic Intergenic -13113 ENSMUSG00000118561.1 ENSMUSG00000118561 ENSMUST00000238928 AC102368.2 processed_pseudogene Interval_27157 chr11 63463726 63464018 + 0 NA Intergenic Intergenic 50703 ENSMUSG00000085113.1 ENSMUSG00000085113 ENSMUST00000151765 B130011K05Rik lincRNA Interval_36603 chr12 51324093 51325525 + 0 NA Intergenic Intergenic 27322 ENSMUSG00000046620.4 ENSMUSG00000046620 ENSMUST00000062226 Rps11-ps4 processed_pseudogene Interval_153469 chr7 145021674 145021973 + 0 NA Intergenic Intergenic -81898 ENSMUSG00000070348.5 ENSMUSG00000070348 ENSMUST00000135985 Ccnd1 protein_coding Interval_101498 chr2 181981585 181982648 + 0 NA Intergenic Intergenic -9013 ENSMUSG00000098505.3 ENSMUSG00000098505 ENSMUST00000184507 Gm14496 protein_coding Interval_82389 chr18 73622646 73624506 + 0 NA Intergenic Intergenic -1352 ENSMUSG00000076941.1 ENSMUSG00000076941 ENSMUST00000103753 Gm22065 miRNA Interval_125509 chr5 67800958 67801394 + 0 NA intron (ENSMUSG00000037685.15, intron 4 of 5) protein_coding-intron (ENSMUSG00000037685.15, intron 5 of 36) 7560 ENSMUSG00000037685.15 ENSMUSG00000037685 ENSMUST00000141443 Atp8a1 protein_coding Interval_122130 chr5 17798627 17799848 + 0 NA intron (ENSMUSG00000002944.15, intron 8 of 14) protein_coding-intron (ENSMUSG00000002944.15, intron 8 of 14) 36480 ENSMUSG00000002944.15 ENSMUSG00000002944 ENSMUST00000197574 Cd36 protein_coding Interval_15573 chr10 51664294 51665023 + 0 NA Intergenic Intergenic -2331 ENSMUSG00000112878.1 ENSMUSG00000112878 ENSMUST00000219017 1700042O05Rik lincRNA Interval_150453 chr7 110738654 110739079 + 0 NA Intergenic Intergenic -25469 ENSMUSG00000109749.1 ENSMUSG00000109749 ENSMUST00000209719 Gm18907 processed_pseudogene Interval_21222 chr10 127297816 127298087 + 0 NA promoter-TSS (ENSMUSG00000040354.14) protein_coding-promoter-TSS (ENSMUSG00000040354.14) 7122 ENSMUSG00000116429.1 ENSMUSG00000116429 ENSMUST00000230446 Ddit3 protein_coding Interval_107840 chr3 116056811 116058003 + 0 NA Intergenic Intergenic 8512 ENSMUSG00000077741.1 ENSMUSG00000077741 ENSMUST00000104553 Gm26344 snoRNA Interval_11429 chr1 181894416 181894651 + 0 NA Intergenic Intergenic -41344 ENSMUSG00000056699.7 ENSMUSG00000056699 ENSMUST00000070987 Gm5533 lincRNA Interval_78718 chr18 18836724 18837340 + 0 NA Intergenic Intergenic -296185 ENSMUSG00000117378.1 ENSMUSG00000117378 ENSMUST00000234128 Gm31086 lincRNA Interval_174084 chrX 134538708 134540201 + 0 NA intron (ENSMUSG00000048007.4, intron 1 of 1) protein_coding-intron (ENSMUSG00000048007.4, intron 1 of 1) 2411 ENSMUSG00000048007.4 ENSMUSG00000048007 ENSMUST00000054213 Timm8a1 protein_coding Interval_37744 chr12 71595881 71596700 + 0 NA intron (ENSMUSG00000114028.1, intron 2 of 5) lincRNA-intron (ENSMUSG00000114028.1, intron 2 of 5) 18325 ENSMUSG00000114028.1 ENSMUSG00000114028 ENSMUST00000222033 9630002D21Rik lincRNA Interval_141775 chr6 134390532 134390978 + 0 NA intron (ENSMUSG00000107666.1, intron 3 of 8) antisense-intron (ENSMUSG00000107666.1, intron 3 of 8) -7885 ENSMUSG00000030200.13 ENSMUSG00000030200 ENSMUST00000142612 Bcl2l14 protein_coding Interval_131836 chr5 140238922 140239304 + 0 NA intron (ENSMUSG00000029554.15, intron 2 of 3) protein_coding-intron (ENSMUSG00000029554.15, intron 10 of 17) 29571 ENSMUSG00000087248.7 ENSMUSG00000087248 ENSMUST00000133999 Gm16120 antisense Interval_63110 chr15 99129692 99130584 + 0 NA intron (ENSMUSG00000051934.5, intron 1 of 5) protein_coding-intron (ENSMUSG00000051934.5, intron 1 of 12) 3034 ENSMUSG00000088377.1 ENSMUSG00000088377 ENSMUST00000157752 Gm25183 snoRNA Interval_67697 chr16 56017511 56017735 + 0 NA TTS (ENSMUSG00000071533.11) protein_coding-TTS (ENSMUSG00000071533.11) 12083 ENSMUSG00000071533.11 ENSMUSG00000071533 ENSMUST00000122253 Pcnp protein_coding Interval_57730 chr15 17095081 17095536 + 0 NA Intergenic Intergenic -18369 ENSMUSG00000115182.1 ENSMUSG00000115182 ENSMUST00000227358 Gm49128 lincRNA Interval_88562 chr2 6162464 6163361 + 0 NA Intergenic Intergenic -28956 ENSMUSG00000082332.2 ENSMUSG00000082332 ENSMUST00000117166 Gm13384 processed_pseudogene Interval_161372 chr8 120012669 120014103 + 0 NA exon (ENSMUSG00000031825.16, exon 1 of 4) protein_coding-exon (ENSMUSG00000031825.16, exon 1 of 4) 178 ENSMUSG00000031825.16 ENSMUSG00000031825 ENSMUST00000144801 Crispld2 protein_coding Interval_95896 chr2 118179577 118180472 + 0 NA intron (ENSMUSG00000027344.14, intron 10 of 11) protein_coding-intron (ENSMUSG00000027344.14, intron 10 of 11) -55977 ENSMUSG00000101859.1 ENSMUSG00000101859 ENSMUST00000190311 Gm29233 lincRNA Interval_35978 chr12 33056989 33057674 + 0 NA intron (ENSMUSG00000035860.9, intron 1 of 3) protein_coding-intron (ENSMUSG00000035860.9, intron 8 of 19) 2930 ENSMUSG00000035860.9 ENSMUSG00000035860 ENSMUST00000219065 Cdhr3 protein_coding Interval_97059 chr2 130876266 130876722 + 0 NA intron (ENSMUSG00000085566.1, intron 1 of 1) processed_transcript-intron (ENSMUSG00000085566.1, intron 1 of 1) -4372 ENSMUSG00000080989.1 ENSMUSG00000080989 ENSMUST00000121864 Gm14048 processed_pseudogene Interval_149285 chr7 96927805 96928120 + 0 NA intron (ENSMUSG00000085560.2, intron 3 of 3) processed_transcript-intron (ENSMUSG00000085560.2, intron 2 of 3) -7860 ENSMUSG00000087980.1 ENSMUSG00000087980 ENSMUST00000157355 Gm22226 snRNA Interval_48612 chr13 100666534 100667212 + 0 NA TTS (ENSMUSG00000078941.9) protein_coding-TTS (ENSMUSG00000078941.9) -2844 ENSMUSG00000048924.14 ENSMUSG00000048924 ENSMUST00000057325 Ccdc125 protein_coding Interval_103284 chr3 37974981 37976777 + 0 NA intron (ENSMUSG00000106461.1, intron 2 of 3) lincRNA-intron (ENSMUSG00000106461.1, intron 2 of 3) -6913 ENSMUSG00000105099.1 ENSMUSG00000105099 ENSMUST00000198065 Gm42751 TEC Interval_6289 chr1 105490974 105492195 + 0 NA intron (ENSMUSG00000101214.1, intron 1 of 5) sense_overlapping-intron (ENSMUSG00000101214.1, intron 1 of 5) 35613 ENSMUSG00000067017.5 ENSMUSG00000067017 ENSMUST00000086725 Capza1-ps1 pseudogene Interval_128489 chr5 113614223 113614835 + 0 NA TTS (ENSMUSG00000042190.12) protein_coding-TTS (ENSMUSG00000042190.12) -30434 ENSMUSG00000085713.1 ENSMUSG00000085713 ENSMUST00000141710 Gm15736 antisense Interval_48457 chr13 99162610 99164274 + 0 NA Intergenic Intergenic -21381 ENSMUSG00000050919.9 ENSMUSG00000050919 ENSMUST00000056558 Zfp366 protein_coding Interval_134364 chr6 26776304 26777422 + 0 NA Intergenic Intergenic -53554 ENSMUSG00000106742.1 ENSMUSG00000106742 ENSMUST00000201073 Gm42474 processed_pseudogene Interval_129425 chr5 120096955 120097325 + 0 NA Intergenic Intergenic 32805 ENSMUSG00000064617.1 ENSMUSG00000064617 ENSMUST00000082683 n-R5s176 rRNA Interval_171650 chr9 119945325 119945979 + 0 NA intron (ENSMUSG00000032514.11, intron 8 of 19) protein_coding-intron (ENSMUSG00000032514.11, intron 8 of 28) -12800 ENSMUSG00000032513.8 ENSMUSG00000032513 ENSMUST00000213409 Gorasp1 protein_coding Interval_107962 chr3 117664075 117664459 + 0 NA intron (ENSMUSG00000033342.15, intron 4 of 5) protein_coding-intron (ENSMUSG00000033342.15, intron 4 of 5) 179183 ENSMUSG00000033342.15 ENSMUSG00000033342 ENSMUST00000106473 Plppr5 protein_coding Interval_44280 chr13 43319335 43319526 + 0 NA Intergenic Intergenic -16025 ENSMUSG00000051335.6 ENSMUSG00000051335 ENSMUST00000222779 Gfod1 protein_coding Interval_106545 chr3 97138761 97139918 + 0 NA Intergenic Intergenic 1322 ENSMUSG00000088511.1 ENSMUSG00000088511 ENSMUST00000157886 Gm24435 snRNA Interval_170956 chr9 113264462 113265144 + 0 NA Intergenic Intergenic -22904 ENSMUSG00000111022.1 ENSMUSG00000111022 ENSMUST00000217623 Gm36367 lincRNA Interval_23317 chr11 21326098 21327371 + 0 NA intron (ENSMUSG00000001891.16, intron 2 of 3) protein_coding-intron (ENSMUSG00000001891.16, intron 8 of 9) -3232 ENSMUSG00000001891.16 ENSMUSG00000001891 ENSMUST00000143890 Ugp2 protein_coding Interval_3580 chr1 59719149 59721364 + 0 NA Intergenic Intergenic 15466 ENSMUSG00000089093.3 ENSMUSG00000089093 ENSMUST00000158468 Snord11 snoRNA Interval_37983 chr12 73583948 73585786 + 0 NA promoter-TSS (ENSMUSG00000021108.18) protein_coding-promoter-TSS (ENSMUSG00000021108.18) 71 ENSMUSG00000021108.18 ENSMUSG00000021108 ENSMUST00000220898 Prkch protein_coding Interval_164538 chr9 37998124 37999060 + 0 NA Intergenic Intergenic -2331 ENSMUSG00000110705.1 ENSMUSG00000110705 ENSMUST00000212049 Gm45701 unprocessed_pseudogene Interval_61909 chr15 85131494 85132730 + 0 NA promoter-TSS (ENSMUSG00000022431.3) protein_coding-promoter-TSS (ENSMUSG00000022431.3) 9 ENSMUSG00000022431.3 ENSMUSG00000022431 ENSMUST00000229238 Ribc2 protein_coding Interval_168636 chr9 84745432 84745687 + 0 NA Intergenic Intergenic -28848 ENSMUSG00000099724.2 ENSMUSG00000099724 ENSMUST00000216019 4930554C24Rik lincRNA Interval_94625 chr2 92797129 92797349 + 0 NA Intergenic Intergenic 55009 ENSMUSG00000085976.1 ENSMUSG00000085976 ENSMUST00000152230 Gm13816 lincRNA Interval_152589 chr7 134880282 134880722 + 0 NA intron (ENSMUSG00000058325.6, intron 27 of 29) protein_coding-intron (ENSMUSG00000058325.6, intron 27 of 51) -20168 ENSMUSG00000110167.1 ENSMUSG00000110167 ENSMUST00000210342 Gm45532 TEC Interval_137517 chr6 72851665 72852796 + 0 NA intron (ENSMUSG00000055239.10, intron 2 of 3) protein_coding-intron (ENSMUSG00000055239.10, intron 3 of 6) 43689 ENSMUSG00000107610.1 ENSMUSG00000107610 ENSMUST00000205107 D530018E20Rik TEC Interval_13842 chr10 23777220 23777528 + 0 NA Intergenic Intergenic 8101 ENSMUSG00000070063.1 ENSMUSG00000070063 ENSMUST00000093556 Snora33 snoRNA Interval_90496 chr2 30806106 30808393 + 0 NA promoter-TSS (ENSMUSG00000026857.9) protein_coding-promoter-TSS (ENSMUSG00000026857.9) -693 ENSMUSG00000026857.9 ENSMUSG00000026857 ENSMUST00000143970 Ntmt1 protein_coding Interval_88835 chr2 11534968 11536042 + 0 NA promoter-TSS (ENSMUSG00000102376.1) TEC-promoter-TSS (ENSMUSG00000102376.1) -811 ENSMUSG00000102376.1 ENSMUSG00000102376 ENSMUST00000195494 Gm37975 TEC Interval_82248 chr18 69588195 69588550 + 0 NA intron (ENSMUSG00000053477.17, intron 7 of 8) protein_coding-intron (ENSMUSG00000053477.17, intron 9 of 20) 36409 ENSMUSG00000088659.1 ENSMUSG00000088659 ENSMUST00000158034 Gm24845 rRNA Interval_18621 chr10 88590784 88591104 + 0 NA intron (ENSMUSG00000020061.18, intron 1 of 26) protein_coding-intron (ENSMUSG00000020061.18, intron 1 of 28) -11528 ENSMUSG00000112841.1 ENSMUSG00000112841 ENSMUST00000217743 Gm48752 TEC Interval_99141 chr2 157436424 157437425 + 0 NA intron (ENSMUSG00000027646.15, intron 2 of 3) protein_coding-intron (ENSMUSG00000027646.15, intron 1 of 13) 12808 ENSMUSG00000027646.15 ENSMUSG00000027646 ENSMUST00000109529 Src protein_coding Interval_148371 chr7 80833084 80834151 + 0 NA Intergenic Intergenic -27334 ENSMUSG00000038797.13 ENSMUSG00000038797 ENSMUST00000155128 Zscan2 protein_coding Interval_28784 chr11 78301108 78302119 + 0 NA promoter-TSS (ENSMUSG00000002055.9) protein_coding-promoter-TSS (ENSMUSG00000002055.9) -7657 ENSMUSG00000087295.1 ENSMUSG00000087295 ENSMUST00000147795 Gm3948 antisense Interval_154943 chr8 25211439 25211828 + 0 NA intron (ENSMUSG00000065954.11, intron 1 of 4) protein_coding-intron (ENSMUSG00000065954.11, intron 1 of 2) -10184 ENSMUSG00000065954.11 ENSMUSG00000065954 ENSMUST00000211218 Tacc1 protein_coding Interval_42574 chr13 15683113 15683784 + 0 NA intron (ENSMUSG00000021318.15, intron 10 of 11) protein_coding-intron (ENSMUSG00000021318.15, intron 10 of 14) 33513 ENSMUSG00000113191.1 ENSMUSG00000113191 ENSMUST00000220835 Gm48343 processed_pseudogene Interval_98314 chr2 150955599 150956647 + 0 NA intron (ENSMUSG00000068115.13, intron 13 of 23) protein_coding-intron (ENSMUSG00000068115.13, intron 13 of 23) -9314 ENSMUSG00000084264.1 ENSMUSG00000084264 ENSMUST00000117833 Gm14142 processed_pseudogene Interval_145289 chr7 31155611 31157081 + 0 NA promoter-TSS (ENSMUSG00000001248.15) protein_coding-promoter-TSS (ENSMUSG00000001248.15) -6012 ENSMUSG00000100985.1 ENSMUSG00000100985 ENSMUST00000190947 Gm10640 antisense Interval_65187 chr16 20413765 20414287 + 0 NA intron (ENSMUSG00000022822.16, intron 2 of 4) protein_coding-intron (ENSMUSG00000022822.16, intron 2 of 10) -15078 ENSMUSG00000022822.16 ENSMUSG00000022822 ENSMUST00000231522 Abcc5 protein_coding Interval_75876 chr17 72477271 72478324 + 0 NA intron (ENSMUSG00000055471.7, intron 1 of 3) protein_coding-intron (ENSMUSG00000055471.7, intron 1 of 28) 21621 ENSMUSG00000089487.1 ENSMUSG00000089487 ENSMUST00000158862 Gm24736 snRNA Interval_16781 chr10 68120785 68120966 + 0 NA intron (ENSMUSG00000019947.10, intron 7 of 9) protein_coding-intron (ENSMUSG00000019947.10, intron 8 of 10) -94249 ENSMUSG00000086838.1 ENSMUSG00000086838 ENSMUST00000143555 Gm16212 antisense Interval_131033 chr5 134668338 134669762 + 0 NA promoter-TSS (ENSMUSG00000029674.13) protein_coding-promoter-TSS (ENSMUSG00000029674.13) -4845 ENSMUSG00000029674.13 ENSMUSG00000029674 ENSMUST00000132027 Limk1 protein_coding Interval_145612 chr7 36016821 36017503 + 0 NA Intergenic Intergenic -80216 ENSMUSG00000108711.1 ENSMUSG00000108711 ENSMUST00000205504 Gm38991 lincRNA Interval_107574 chr3 108571214 108572446 + 0 NA exon (ENSMUSG00000048100.13, exon 1 of 4) protein_coding-exon (ENSMUSG00000048100.13, exon 1 of 4) 131 ENSMUSG00000048100.13 ENSMUSG00000048100 ENSMUST00000139603 Taf13 protein_coding Interval_14833 chr10 40364430 40365098 + 0 NA intron (ENSMUSG00000038481.13, intron 1 of 11) protein_coding-intron (ENSMUSG00000038481.13, intron 1 of 12) -14661 ENSMUSG00000038491.9 ENSMUSG00000038491 ENSMUST00000044774 Cdk19os antisense Interval_101609 chr3 7682217 7683545 + 0 NA intron (ENSMUSG00000097804.1, intron 2 of 2) antisense-intron (ENSMUSG00000097804.1, intron 2 of 2) -69154 ENSMUSG00000040329.14 ENSMUSG00000040329 ENSMUST00000191681 Il7 protein_coding Interval_35845 chr12 31177929 31178293 + 0 NA intron (ENSMUSG00000095953.3, intron 12 of 20) processed_transcript-intron (ENSMUSG00000095953.3, intron 3 of 3) 21379 ENSMUSG00000111944.1 ENSMUSG00000111944 ENSMUST00000218516 Gm18024 processed_pseudogene Interval_23616 chr11 23840856 23841662 + 0 NA Intergenic Intergenic 50645 ENSMUSG00000020273.13 ENSMUSG00000020273 ENSMUST00000102863 Papolg protein_coding Interval_117490 chr4 124122956 124123484 + 0 NA Intergenic Intergenic 155957 ENSMUSG00000103541.1 ENSMUSG00000103541 ENSMUST00000193103 Gm37667 TEC Interval_77502 chr17 90378025 90378301 + 0 NA intron (ENSMUSG00000024109.18, intron 3 of 3) protein_coding-intron (ENSMUSG00000024109.18, intron 15 of 20) -76726 ENSMUSG00000073367.5 ENSMUSG00000073367 ENSMUST00000097270 Gm10493 processed_pseudogene Interval_14116 chr10 27652660 27653733 + 0 NA intron (ENSMUSG00000112610.1, intron 3 of 4) lincRNA-intron (ENSMUSG00000112610.1, intron 3 of 4) -37868 ENSMUSG00000103931.1 ENSMUSG00000103931 ENSMUST00000192114 Gm36962 TEC Interval_122998 chr5 28277362 28277924 + 0 NA Intergenic Intergenic -31837 ENSMUSG00000044681.19 ENSMUSG00000044681 ENSMUST00000141196 Cnpy1 protein_coding Interval_25706 chr11 50915676 50916484 + 0 NA promoter-TSS (ENSMUSG00000049321.17) protein_coding-promoter-TSS (ENSMUSG00000049321.17) 54 ENSMUSG00000049321.17 ENSMUSG00000049321 ENSMUST00000151027 Zfp2 protein_coding Interval_88966 chr2 13725749 13725954 + 0 NA intron (ENSMUSG00000003418.11, intron 2 of 7) protein_coding-intron (ENSMUSG00000003418.11, intron 2 of 7) 53335 ENSMUSG00000104354.1 ENSMUSG00000104354 ENSMUST00000195289 Gm37126 antisense Interval_116993 chr4 118792140 118792378 + 0 NA promoter-TSS (ENSMUSG00000081474.1) processed_pseudogene-promoter-TSS (ENSMUSG00000081474.1) -666 ENSMUSG00000081474.1 ENSMUSG00000081474 ENSMUST00000119357 Gm12855 processed_pseudogene Interval_25840 chr11 52073548 52073830 + 0 NA intron (ENSMUSG00000020389.19, intron 5 of 5) protein_coding-intron (ENSMUSG00000020389.19, intron 13 of 13) 25464 ENSMUSG00000093006.2 ENSMUSG00000093006 ENSMUST00000175265 Gm24157 miRNA Interval_140367 chr6 117391091 117391302 + 0 NA Intergenic Intergenic 32421 ENSMUSG00000107434.1 ENSMUSG00000107434 ENSMUST00000203927 Gm4640 lincRNA Interval_50096 chr14 7960425 7961043 + 0 NA TTS (ENSMUSG00000109649.1) protein_coding-TTS (ENSMUSG00000109649.1) 3446 ENSMUSG00000109649.1 ENSMUSG00000109649 ENSMUST00000211339 Gm45521 protein_coding Interval_96881 chr2 129205780 129205990 + 0 NA promoter-TSS (ENSMUSG00000027397.14) protein_coding-promoter-TSS (ENSMUSG00000027397.14) -6691 ENSMUSG00000103009.1 ENSMUSG00000103009 ENSMUST00000192413 Gm4430 TEC Interval_148329 chr7 80539509 80540542 + 0 NA Intergenic Intergenic 32238 ENSMUSG00000091989.1 ENSMUSG00000091989 ENSMUST00000166096 Ndufab1-ps processed_pseudogene Interval_30242 chr11 91602559 91603234 + 0 NA Intergenic Intergenic -25338 ENSMUSG00000046755.5 ENSMUSG00000046755 ENSMUST00000061019 Kif2b protein_coding Interval_79251 chr18 27660014 27660618 + 0 NA Intergenic Intergenic 46251 ENSMUSG00000117529.1 ENSMUSG00000117529 ENSMUST00000234608 Gm49978 lincRNA Interval_132018 chr5 142325575 142325770 + 0 NA Intergenic Intergenic 42566 ENSMUSG00000097947.1 ENSMUSG00000097947 ENSMUST00000182990 Gm26970 processed_pseudogene Interval_5611 chr1 90220988 90222875 + 0 NA Intergenic Intergenic 6595 ENSMUSG00000104087.1 ENSMUSG00000104087 ENSMUST00000195172 Gm38277 TEC Interval_141142 chr6 125225861 125226097 + 0 NA intron (ENSMUSG00000038213.7, intron 5 of 6) protein_coding-intron (ENSMUSG00000038213.7, intron 5 of 6) 5881 ENSMUSG00000038213.7 ENSMUSG00000038213 ENSMUST00000043422 Tapbpl protein_coding Interval_109403 chr3 141838755 141840228 + 0 NA TTS (ENSMUSG00000052430.15) protein_coding-TTS (ENSMUSG00000052430.15) 92017 ENSMUSG00000052430.15 ENSMUSG00000052430 ENSMUST00000106230 Bmpr1b protein_coding Interval_129148 chr5 117840187 117840457 + 0 NA intron (ENSMUSG00000029361.18, intron 1 of 3) protein_coding-intron (ENSMUSG00000029361.18, intron 1 of 3) -26797 ENSMUSG00000029361.18 ENSMUSG00000029361 ENSMUST00000138554 Nos1 protein_coding Interval_12976 chr10 8860610 8861369 + 0 NA exon (ENSMUSG00000111165.1, exon 1 of 1) TEC-exon (ENSMUSG00000111165.1, exon 1 of 1) 454 ENSMUSG00000111165.1 ENSMUSG00000111165 ENSMUST00000214016 4930553I21Rik TEC Interval_94002 chr2 80610820 80611132 + 0 NA Intergenic Intergenic -6290 ENSMUSG00000027001.10 ENSMUSG00000027001 ENSMUST00000151204 Dusp19 protein_coding Interval_28081 chr11 72703977 72704464 + 0 NA intron (ENSMUSG00000020790.14, intron 1 of 24) protein_coding-intron (ENSMUSG00000020790.14, intron 1 of 24) 14214 ENSMUSG00000020790.14 ENSMUSG00000020790 ENSMUST00000132889 Ankfy1 protein_coding Interval_78173 chr18 9729782 9730797 + 0 NA intron (ENSMUSG00000036103.9, intron 2 of 9) protein_coding-intron (ENSMUSG00000036103.9, intron 2 of 10) -3619 ENSMUSG00000091285.2 ENSMUSG00000091285 ENSMUST00000171339 Gm17430 processed_pseudogene Interval_3935 chr1 64929100 64930656 + 0 NA intron (ENSMUSG00000051344.13, intron 2 of 8) protein_coding-intron (ENSMUSG00000051344.13, intron 2 of 7) -4524 ENSMUSG00000097264.1 ENSMUSG00000097264 ENSMUST00000181350 Rpl31-ps24 processed_pseudogene Interval_174519 chrX 155370175 155370386 + 0 NA Intergenic Intergenic -29526 ENSMUSG00000025289.15 ENSMUSG00000025289 ENSMUST00000123915 Prdx4 protein_coding Interval_47169 chr13 76977716 76978439 + 0 NA intron (ENSMUSG00000021596.16, intron 17 of 20) protein_coding-intron (ENSMUSG00000021596.16, intron 17 of 20) 42914 ENSMUSG00000090119.1 ENSMUSG00000090119 ENSMUST00000160999 Gm8185 processed_pseudogene Interval_90254 chr2 29340147 29340578 + 0 NA Intergenic Intergenic 56097 ENSMUSG00000086994.1 ENSMUSG00000086994 ENSMUST00000153600 Gm13402 antisense Interval_167565 chr9 70495154 70495716 + 0 NA intron (ENSMUSG00000032217.13, intron 1 of 4) protein_coding-intron (ENSMUSG00000032217.13, intron 2 of 14) 19951 ENSMUSG00000065202.1 ENSMUSG00000065202 ENSMUST00000083268 Gm24615 snoRNA Interval_169529 chr9 98923028 98923418 + 0 NA Intergenic Intergenic 2389 ENSMUSG00000101240.1 ENSMUSG00000101240 ENSMUST00000191410 Gm28266 processed_pseudogene Interval_113860 chr4 59404135 59405522 + 0 NA intron (ENSMUSG00000038578.15, intron 5 of 16) protein_coding-intron (ENSMUSG00000038578.15, intron 5 of 16) -35962 ENSMUSG00000083979.1 ENSMUSG00000083979 ENSMUST00000117967 Gm12527 processed_pseudogene Interval_104722 chr3 69747780 69748069 + 0 NA intron (ENSMUSG00000027787.14, intron 1 of 2) protein_coding-intron (ENSMUSG00000027787.14, intron 14 of 15) 23688 ENSMUSG00000027787.14 ENSMUSG00000027787 ENSMUST00000150210 Nmd3 protein_coding Interval_65298 chr16 21332708 21333965 + 0 NA promoter-TSS (ENSMUSG00000116632.1) transcribed_processed_pseudogene-promoter-TSS (ENSMUSG00000116632.1) -207 ENSMUSG00000116632.1 ENSMUSG00000116632 ENSMUST00000231972 Magef1 transcribed_processed_pseudogene Interval_18113 chr10 82746816 82748064 + 0 NA Intergenic Intergenic 4219 ENSMUSG00000020248.18 ENSMUSG00000020248 ENSMUST00000128397 Nfyb protein_coding Interval_153353 chr7 143848175 143849373 + 0 NA TTS (ENSMUSG00000058454.15) protein_coding-TTS (ENSMUSG00000058454.15) 12123 ENSMUSG00000058454.15 ENSMUSG00000058454 ENSMUST00000145471 Dhcr7 protein_coding Interval_73847 chr17 44546390 44546746 + 0 NA intron (ENSMUSG00000039153.17, intron 6 of 6) protein_coding-intron (ENSMUSG00000039153.17, intron 5 of 5) -15422 ENSMUSG00000090048.1 ENSMUSG00000090048 ENSMUST00000160203 Runx2os3 antisense Interval_62098 chr15 86592571 86592868 + 0 NA Intergenic Intergenic -111572 ENSMUSG00000116040.1 ENSMUSG00000116040 ENSMUST00000229409 Gm49464 lincRNA Interval_170850 chr9 111184828 111185995 + 0 NA intron (ENSMUSG00000032497.19, intron 1 of 5) protein_coding-intron (ENSMUSG00000032497.19, intron 5 of 14) 11195 ENSMUSG00000032497.19 ENSMUSG00000032497 ENSMUST00000196906 Lrrfip2 protein_coding Interval_84419 chr19 10777706 10778090 + 0 NA intron (ENSMUSG00000067577.8, intron 2 of 3) processed_transcript-intron (ENSMUSG00000067577.8, intron 1 of 3) -4017 ENSMUSG00000067577.8 ENSMUSG00000067577 ENSMUST00000186052 A430093F15Rik processed_transcript Interval_155936 chr8 41124509 41125155 + 0 NA intron (ENSMUSG00000045636.16, intron 1 of 1) protein_coding-intron (ENSMUSG00000045636.16, intron 1 of 13) 71722 ENSMUSG00000085672.1 ENSMUSG00000085672 ENSMUST00000125903 Gm16193 antisense Interval_69303 chr16 92057529 92059057 + 0 NA promoter-TSS (ENSMUSG00000039680.10) protein_coding-promoter-TSS (ENSMUSG00000039680.10) -23 ENSMUSG00000116930.1 ENSMUSG00000116930 ENSMUST00000232677 Gm49711 protein_coding Interval_137768 chr6 82248970 82249273 + 0 NA Intergenic Intergenic 6947 ENSMUSG00000108224.1 ENSMUSG00000108224 ENSMUST00000204563 Gm31861 processed_pseudogene Interval_174703 chrX 163760445 163761635 + 0 NA exon (ENSMUSG00000083695.6, exon 1 of 1) protein_coding-exon (ENSMUSG00000083695.6, exon 1 of 1) 289 ENSMUSG00000083695.6 ENSMUSG00000083695 ENSMUST00000059320 Rnf138rt1 protein_coding Interval_104203 chr3 60539889 60540749 + 0 NA TTS (ENSMUSG00000104235.1) TEC-TTS (ENSMUSG00000104235.1) 4568 ENSMUSG00000104235.1 ENSMUSG00000104235 ENSMUST00000193609 Gm37589 TEC Interval_160651 chr8 111329323 111329740 + 0 NA intron (ENSMUSG00000012519.14, intron 3 of 10) protein_coding-intron (ENSMUSG00000012519.14, intron 3 of 10) 8262 ENSMUSG00000012519.14 ENSMUSG00000012519 ENSMUST00000145862 Mlkl protein_coding Interval_55880 chr14 101759134 101759812 + 0 NA intron (ENSMUSG00000033060.16, intron 1 of 30) protein_coding-intron (ENSMUSG00000033060.16, intron 1 of 30) -29658 ENSMUSG00000053821.4 ENSMUSG00000053821 ENSMUST00000066461 Gm9922 bidirectional_promoter_lncRNA Interval_39705 chr12 93960872 93961537 + 0 NA Intergenic Intergenic -32534 ENSMUSG00000094935.2 ENSMUSG00000094935 ENSMUST00000180321 Gm9726 processed_pseudogene Interval_59037 chr15 41932298 41934011 + 0 NA Intergenic Intergenic 11078 ENSMUSG00000116083.1 ENSMUSG00000116083 ENSMUST00000229137 Gm5469 processed_pseudogene Interval_168817 chr9 87463749 87464204 + 0 NA Intergenic Intergenic -34136 ENSMUSG00000102683.1 ENSMUSG00000102683 ENSMUST00000193859 Gm37375 TEC Interval_66088 chr16 31526291 31527179 + 0 NA Intergenic Intergenic 18348 ENSMUSG00000116762.1 ENSMUSG00000116762 ENSMUST00000231805 Gm46560 lincRNA Interval_96967 chr2 130099265 130100033 + 0 NA promoter-TSS (ENSMUSG00000074804.3) processed_pseudogene-promoter-TSS (ENSMUSG00000074804.3) -875 ENSMUSG00000074804.3 ENSMUSG00000074804 ENSMUST00000121103 AU015228 processed_pseudogene Interval_68266 chr16 71638164 71638481 + 0 NA Intergenic Intergenic -25466 ENSMUSG00000065924.1 ENSMUSG00000065924 ENSMUST00000083990 Gm22797 snoRNA Interval_64883 chr16 16976045 16976684 + 0 NA Intergenic Intergenic 7755 ENSMUSG00000116598.1 ENSMUSG00000116598 ENSMUST00000232160 Gm6438 processed_pseudogene Interval_103291 chr3 38198930 38199197 + 0 NA Intergenic Intergenic 9056 ENSMUSG00000106002.1 ENSMUSG00000106002 ENSMUST00000197658 5430434I15Rik lincRNA Interval_70580 chr17 12118678 12120007 + 0 NA promoter-TSS (ENSMUSG00000023827.8) protein_coding-promoter-TSS (ENSMUSG00000023827.8) 13 ENSMUSG00000023827.8 ENSMUSG00000023827 ENSMUST00000167905 Agpat4 protein_coding Interval_95347 chr2 106822176 106823212 + 0 NA intron (ENSMUSG00000016386.15, intron 4 of 6) protein_coding-intron (ENSMUSG00000016386.15, intron 4 of 6) 13358 ENSMUSG00000105450.1 ENSMUSG00000105450 ENSMUST00000199948 Gm22813 scaRNA Interval_3524 chr1 59322265 59322888 + 0 NA intron (ENSMUSG00000026023.16, intron 3 of 4) protein_coding-intron (ENSMUSG00000026023.16, intron 10 of 13) 23640 ENSMUSG00000026023.16 ENSMUSG00000026023 ENSMUST00000162906 Cdk15 protein_coding Interval_20049 chr10 112726739 112726947 + 0 NA promoter-TSS (ENSMUSG00000100314.6) lincRNA-promoter-TSS (ENSMUSG00000100314.6) -83 ENSMUSG00000100314.6 ENSMUSG00000100314 ENSMUST00000189116 1700010J16Rik lincRNA Interval_168778 chr9 86972162 86973863 + 0 NA Intergenic Intergenic 33151 ENSMUSG00000111874.1 ENSMUSG00000111874 ENSMUST00000217543 Gm36539 lincRNA Interval_83148 chr18 82154258 82156116 + 0 NA Intergenic Intergenic 103323 ENSMUSG00000117913.1 ENSMUSG00000117913 ENSMUST00000237813 Gm50294 lincRNA Interval_90401 chr2 30192080 30193260 + 0 NA intron (ENSMUSG00000039648.14, intron 2 of 12) protein_coding-intron (ENSMUSG00000039648.14, intron 2 of 12) 13119 ENSMUSG00000039648.14 ENSMUSG00000039648 ENSMUST00000149522 Kyat1 protein_coding Interval_6244 chr1 104279662 104280710 + 0 NA Intergenic Intergenic -31535 ENSMUSG00000101297.1 ENSMUSG00000101297 ENSMUST00000187501 Gm18447 processed_pseudogene Interval_63611 chr15 102341452 102342222 + 0 NA intron (ENSMUSG00000036678.8, intron 6 of 8) protein_coding-intron (ENSMUSG00000036678.8, intron 7 of 15) -2876 ENSMUSG00000036678.8 ENSMUSG00000036678 ENSMUST00000230349 Aaas protein_coding Interval_114102 chr4 63455857 63457186 + 0 NA intron (ENSMUSG00000039137.18, intron 2 of 2) protein_coding-intron (ENSMUSG00000039137.18, intron 3 of 11) -23199 ENSMUSG00000039137.18 ENSMUSG00000039137 ENSMUST00000140720 Whrn protein_coding Interval_44524 chr13 45718517 45719281 + 0 NA intron (ENSMUSG00000046876.16, intron 5 of 7) protein_coding-intron (ENSMUSG00000046876.16, intron 5 of 7) -30673 ENSMUSG00000114131.1 ENSMUSG00000114131 ENSMUST00000221126 Gm47460 antisense Interval_40579 chr12 105823120 105823713 + 0 NA intron (ENSMUSG00000021111.15, intron 15 of 20) protein_coding-intron (ENSMUSG00000021111.15, intron 15 of 22) -5651 ENSMUSG00000021111.15 ENSMUSG00000021111 ENSMUST00000172089 Papola protein_coding Interval_29717 chr11 86374659 86375507 + 0 NA Intergenic Intergenic -33743 ENSMUSG00000088091.1 ENSMUSG00000088091 ENSMUST00000157466 Gm23667 rRNA Interval_2160 chr1 36790207 36790679 + 0 NA Intergenic Intergenic 11459 ENSMUSG00000026117.10 ENSMUSG00000026117 ENSMUST00000190128 Zap70 protein_coding Interval_30936 chr11 97289453 97290047 + 0 NA Intergenic Intergenic -9180 ENSMUSG00000001441.13 ENSMUSG00000001441 ENSMUST00000152546 Npepps protein_coding Interval_158747 chr8 85825818 85826322 + 0 NA intron (ENSMUSG00000031703.8, intron 5 of 17) protein_coding-intron (ENSMUSG00000031703.8, intron 5 of 17) -16981 ENSMUSG00000036879.15 ENSMUSG00000036879 ENSMUST00000162305 Phkb protein_coding Interval_98132 chr2 148580362 148580862 + 0 NA Intergenic Intergenic -44099 ENSMUSG00000088870.1 ENSMUSG00000088870 ENSMUST00000158245 Gm25866 snoRNA Interval_114522 chr4 82153462 82153821 + 0 NA Intergenic Intergenic 87684 ENSMUSG00000085022.2 ENSMUSG00000085022 ENSMUST00000161588 Gm5860 lincRNA Interval_99661 chr2 164032463 164033301 + 0 NA intron (ENSMUSG00000054582.4, intron 3 of 5) protein_coding-intron (ENSMUSG00000054582.4, intron 5 of 13) -4118 ENSMUSG00000054582.4 ENSMUSG00000054582 ENSMUST00000150523 Pabpc1l protein_coding Interval_88642 chr2 8377755 8378115 + 0 NA Intergenic Intergenic 94449 ENSMUSG00000088574.1 ENSMUSG00000088574 ENSMUST00000157949 Gm24534 misc_RNA Interval_26729 chr11 60052354 60052865 + 0 NA Intergenic Intergenic -46938 ENSMUSG00000098502.1 ENSMUSG00000098502 ENSMUST00000183502 Gm27511 misc_RNA Interval_85248 chr19 24160475 24160925 + 0 NA intron (ENSMUSG00000024812.11, intron 1 of 22) protein_coding-intron (ENSMUSG00000024812.11, intron 1 of 22) 6630 ENSMUSG00000118371.1 ENSMUSG00000118371 ENSMUST00000237530 Gm50308 processed_pseudogene Interval_167869 chr9 73175046 73177270 + 0 NA promoter-TSS (ENSMUSG00000066478.3) processed_pseudogene-promoter-TSS (ENSMUSG00000066478.3) -417 ENSMUSG00000066478.3 ENSMUSG00000066478 ENSMUST00000183748 Gm5745 processed_pseudogene Interval_18350 chr10 85138359 85138872 + 0 NA intron (ENSMUSG00000020038.10, intron 10 of 12) protein_coding-intron (ENSMUSG00000020038.10, intron 10 of 12) -10588 ENSMUSG00000049038.3 ENSMUSG00000049038 ENSMUST00000214193 Mterf2 protein_coding Interval_120801 chr4 150718619 150719712 + 0 NA Intergenic Intergenic -40373 ENSMUSG00000085869.1 ENSMUSG00000085869 ENSMUST00000149065 Gm16079 lincRNA Interval_60843 chr15 77103662 77104738 + 0 NA intron (ENSMUSG00000033565.18, intron 2 of 9) protein_coding-intron (ENSMUSG00000033565.18, intron 6 of 12) 11602 ENSMUSG00000116298.1 ENSMUSG00000116298 ENSMUST00000230697 4833412C15Rik TEC Interval_171161 chr9 114843483 114844732 + 0 NA promoter-TSS (ENSMUSG00000041012.4) protein_coding-promoter-TSS (ENSMUSG00000041012.4) 49 ENSMUSG00000041012.4 ENSMUSG00000041012 ENSMUST00000213929 Cmtm8 protein_coding Interval_105756 chr3 89164502 89165567 + 0 NA promoter-TSS (ENSMUSG00000068917.12) protein_coding-promoter-TSS (ENSMUSG00000068917.12) -5054 ENSMUSG00000028051.10 ENSMUSG00000028051 ENSMUST00000133368 Hcn3 protein_coding Interval_93423 chr2 72965119 72965330 + 0 NA intron (ENSMUSG00000027109.16, intron 1 of 1) protein_coding-intron (ENSMUSG00000027109.16, intron 3 of 5) 5242 ENSMUSG00000027109.16 ENSMUSG00000027109 ENSMUST00000141372 Sp3 protein_coding Interval_69072 chr16 90427956 90428881 + 0 NA intron (ENSMUSG00000053414.8, intron 1 of 10) protein_coding-intron (ENSMUSG00000053414.8, intron 1 of 10) 27874 ENSMUSG00000053414.8 ENSMUSG00000053414 ENSMUST00000231603 Hunk protein_coding Interval_31921 chr11 103879254 103880445 + 0 NA TTS (ENSMUSG00000034187.18) protein_coding-TTS (ENSMUSG00000034187.18) 394 ENSMUSG00000092540.1 ENSMUSG00000092540 ENSMUST00000172606 Gm8738 processed_pseudogene Interval_2814 chr1 45794611 45796155 + 0 NA promoter-TSS (ENSMUSG00000025995.16) protein_coding-promoter-TSS (ENSMUSG00000025995.16) 22421 ENSMUSG00000087764.1 ENSMUSG00000087764 ENSMUST00000157139 Gm23984 ribozyme Interval_149686 chr7 100644545 100645610 + 0 NA TTS (ENSMUSG00000030701.17) protein_coding-TTS (ENSMUSG00000030701.17) 10729 ENSMUSG00000030704.14 ENSMUSG00000030704 ENSMUST00000123960 Rab6a protein_coding Interval_40180 chr12 102368215 102370068 + 0 NA TTS (ENSMUSG00000044456.16) protein_coding-TTS (ENSMUSG00000044456.16) 37005 ENSMUSG00000021190.14 ENSMUSG00000021190 ENSMUST00000146499 Lgmn protein_coding Interval_60442 chr15 73775698 73776554 + 0 NA intron (ENSMUSG00000072487.11, intron 19 of 29) protein_coding-intron (ENSMUSG00000072487.11, intron 19 of 25) 28408 ENSMUSG00000059895.13 ENSMUSG00000059895 ENSMUST00000053232 Ptp4a3 protein_coding Interval_38369 chr12 77949285 77949757 + 0 NA Intergenic Intergenic 129939 ENSMUSG00000112551.1 ENSMUSG00000112551 ENSMUST00000218309 Gm8219 processed_pseudogene Interval_7388 chr1 130789411 130789733 + 0 NA Intergenic Intergenic -11330 ENSMUSG00000026415.11 ENSMUSG00000026415 ENSMUST00000027670 Fcamr protein_coding Interval_168715 chr9 86260938 86261141 + 0 NA Intergenic Intergenic 55645 ENSMUSG00000083731.1 ENSMUSG00000083731 ENSMUST00000117532 Gm16202 processed_pseudogene Interval_4411 chr1 73986558 73986924 + 0 NA exon (ENSMUSG00000055322.16, exon 1 of 5) protein_coding-exon (ENSMUSG00000055322.16, exon 1 of 5) 111935 ENSMUSG00000055322.16 ENSMUSG00000055322 ENSMUST00000190599 Tns1 protein_coding Interval_50925 chr14 20786638 20786886 + 0 NA intron (ENSMUSG00000021820.18, intron 2 of 21) protein_coding-intron (ENSMUSG00000021820.18, intron 2 of 20) 7204 ENSMUSG00000021820.18 ENSMUSG00000021820 ENSMUST00000225635 Camk2g protein_coding Interval_60112 chr15 65852741 65854359 + 0 NA exon (ENSMUSG00000015002.18, exon 14 of 23) protein_coding-exon (ENSMUSG00000015002.18, exon 14 of 23) 2429 ENSMUSG00000015002.18 ENSMUSG00000015002 ENSMUST00000174749 Efr3a protein_coding Interval_28799 chr11 78397163 78398874 + 0 NA intron (ENSMUSG00000001095.5, intron 11 of 11) protein_coding-intron (ENSMUSG00000001095.5, intron 11 of 11) 3533 ENSMUSG00000085747.1 ENSMUSG00000085747 ENSMUST00000149865 Slc13a2os antisense Interval_92675 chr2 62411172 62412305 + 0 NA intron (ENSMUSG00000035000.8, intron 1 of 25) protein_coding-intron (ENSMUSG00000035000.8, intron 1 of 25) 29404 ENSMUSG00000087681.1 ENSMUSG00000087681 ENSMUST00000133596 Gm13565 lincRNA Interval_71544 chr17 24469833 24471019 + 0 NA promoter-TSS (ENSMUSG00000043445.7) protein_coding-promoter-TSS (ENSMUSG00000043445.7) -9 ENSMUSG00000043445.7 ENSMUSG00000043445 ENSMUST00000234216 Pgp protein_coding Interval_8644 chr1 145977425 145977691 + 0 NA Intergenic Intergenic -442878 ENSMUSG00000090323.2 ENSMUSG00000090323 ENSMUST00000163646 Gm5263 processed_pseudogene Interval_53670 chr14 60764336 60765821 + 0 NA TTS (ENSMUSG00000021990.16) protein_coding-TTS (ENSMUSG00000021990.16) -3056 ENSMUSG00000071347.3 ENSMUSG00000071347 ENSMUST00000025940 C1qtnf9 protein_coding Interval_4419 chr1 74036551 74037407 + 0 NA exon (ENSMUSG00000055322.16, exon 1 of 7) protein_coding-exon (ENSMUSG00000055322.16, exon 1 of 7) 61697 ENSMUSG00000055322.16 ENSMUSG00000055322 ENSMUST00000190599 Tns1 protein_coding Interval_157723 chr8 72526121 72526818 + 0 NA intron (ENSMUSG00000045248.6, intron 1 of 2) protein_coding-intron (ENSMUSG00000045248.6, intron 1 of 2) -4562 ENSMUSG00000110532.1 ENSMUSG00000110532 ENSMUST00000212739 Gm35857 processed_pseudogene Interval_78772 chr18 20551444 20552024 + 0 NA Intergenic Intergenic -2370 ENSMUSG00000117627.1 ENSMUSG00000117627 ENSMUST00000234000 Tpi-rs10 processed_pseudogene Interval_168470 chr9 81568686 81569221 + 0 NA Intergenic Intergenic -63465 ENSMUSG00000097466.8 ENSMUSG00000097466 ENSMUST00000183781 D430036J16Rik antisense Interval_161945 chr8 123966936 123967127 + 0 NA intron (ENSMUSG00000031974.8, intron 4 of 12) protein_coding-intron (ENSMUSG00000031974.8, intron 4 of 12) 16091 ENSMUSG00000031974.8 ENSMUSG00000031974 ENSMUST00000075578 Abcb10 protein_coding Interval_105172 chr3 83155333 83155555 + 0 NA intron (ENSMUSG00000102692.1, intron 1 of 19) protein_coding-intron (ENSMUSG00000102692.1, intron 1 of 19) -26198 ENSMUSG00000074517.2 ENSMUSG00000074517 ENSMUST00000047876 Gm10710 lincRNA Interval_10510 chr1 171401372 171402328 + 0 NA intron (ENSMUSG00000048865.16, intron 3 of 10) protein_coding-intron (ENSMUSG00000048865.16, intron 3 of 11) -9831 ENSMUSG00000026641.13 ENSMUSG00000026641 ENSMUST00000159371 Usf1 protein_coding Interval_134882 chr6 33078626 33079007 + 0 NA Intergenic Intergenic 9933 ENSMUSG00000087777.1 ENSMUSG00000087777 ENSMUST00000157152 Gm22321 snRNA Interval_111531 chr4 22542294 22542609 + 0 NA Intergenic Intergenic -13442 ENSMUSG00000083514.1 ENSMUSG00000083514 ENSMUST00000119408 Gm11881 processed_pseudogene Interval_168935 chr9 89186435 89188455 + 0 NA Intergenic Intergenic -9558 ENSMUSG00000074146.9 ENSMUSG00000074146 ENSMUST00000098484 4930579C12Rik lincRNA Interval_66135 chr16 31890362 31891505 + 0 NA intron (ENSMUSG00000022780.5, intron 10 of 15) protein_coding-intron (ENSMUSG00000022780.5, intron 10 of 15) 12123 ENSMUSG00000022780.5 ENSMUSG00000022780 ENSMUST00000023464 Meltf protein_coding Interval_155944 chr8 41191589 41193132 + 0 NA intron (ENSMUSG00000031594.9, intron 7 of 7) protein_coding-intron (ENSMUSG00000031594.9, intron 7 of 7) 22793 ENSMUSG00000031594.9 ENSMUSG00000031594 ENSMUST00000134510 Fgl1 protein_coding Interval_82486 chr18 74424461 74424800 + 0 NA Intergenic Intergenic 3825 ENSMUSG00000118303.1 ENSMUSG00000118303 ENSMUST00000235981 Gm50168 processed_pseudogene Interval_160264 chr8 107546369 107547476 + 0 NA TTS (ENSMUSG00000031930.11) protein_coding-TTS (ENSMUSG00000031930.11) -4322 ENSMUSG00000065439.1 ENSMUSG00000065439 ENSMUST00000083505 Mir140 miRNA Interval_101455 chr2 181532787 181532958 + 0 NA intron (ENSMUSG00000000826.16, intron 2 of 5) protein_coding-intron (ENSMUSG00000000826.16, intron 1 of 4) 12060 ENSMUSG00000000826.16 ENSMUSG00000000826 ENSMUST00000141523 Dnajc5 protein_coding Interval_167322 chr9 67356531 67357641 + 0 NA intron (ENSMUSG00000052698.15, intron 16 of 58) protein_coding-intron (ENSMUSG00000052698.15, intron 15 of 57) -26439 ENSMUSG00000052698.15 ENSMUSG00000052698 ENSMUST00000213584 Tln2 protein_coding Interval_69377 chr16 92565637 92566401 + 0 NA Intergenic Intergenic -12876 ENSMUSG00000116709.1 ENSMUSG00000116709 ENSMUST00000232213 Gm49722 lincRNA Interval_25120 chr11 44292607 44292803 + 0 NA Intergenic Intergenic -25496 ENSMUSG00000086738.1 ENSMUSG00000086738 ENSMUST00000145584 Gm12154 lincRNA Interval_912 chr1 13117855 13119023 + 0 NA intron (ENSMUSG00000042414.7, intron 6 of 7) protein_coding-intron (ENSMUSG00000042414.7, intron 6 of 7) 8724 ENSMUSG00000042414.7 ENSMUSG00000042414 ENSMUST00000047577 Prdm14 protein_coding Interval_128693 chr5 114751798 114752618 + 0 NA intron (ENSMUSG00000041890.17, intron 10 of 18) protein_coding-intron (ENSMUSG00000041890.17, intron 9 of 17) 9483 ENSMUSG00000041890.17 ENSMUSG00000041890 ENSMUST00000133096 Git2 protein_coding Interval_79757 chr18 34944713 34945646 + 0 NA intron (ENSMUSG00000024359.10, intron 9 of 16) protein_coding-intron (ENSMUSG00000024359.10, intron 9 of 16) -2466 ENSMUSG00000065904.1 ENSMUSG00000065904 ENSMUST00000083970 Gm26109 snoRNA Interval_113612 chr4 56985284 56985837 + 0 NA intron (ENSMUSG00000045589.7, intron 1 of 4) protein_coding-intron (ENSMUSG00000045589.7, intron 1 of 4) 4576 ENSMUSG00000045589.7 ENSMUSG00000045589 ENSMUST00000128276 Frrs1l protein_coding Interval_63090 chr15 99020312 99020575 + 0 NA Intergenic Intergenic -9878 ENSMUSG00000043091.9 ENSMUSG00000043091 ENSMUST00000230447 Tuba1c protein_coding Interval_90452 chr2 30544787 30545654 + 0 NA Intergenic Intergenic 10491 ENSMUSG00000085275.1 ENSMUSG00000085275 ENSMUST00000145413 Gm14487 lincRNA Interval_16240 chr10 61648005 61649460 + 0 NA exon (ENSMUSG00000020089.8, exon 1 of 11) protein_coding-exon (ENSMUSG00000020089.8, exon 1 of 11) -14957 ENSMUSG00000020089.8 ENSMUSG00000020089 ENSMUST00000162028 Ppa1 protein_coding Interval_60185 chr15 67080945 67081264 + 0 NA Intergenic Intergenic 41046 ENSMUSG00000116289.1 ENSMUSG00000116289 ENSMUST00000230911 Gm31342 lincRNA Interval_48853 chr13 104051528 104051854 + 0 NA intron (ENSMUSG00000021710.11, intron 7 of 11) protein_coding-intron (ENSMUSG00000021710.11, intron 7 of 12) -17118 ENSMUSG00000021710.11 ENSMUSG00000021710 ENSMUST00000224086 Nln protein_coding Interval_1955 chr1 34891456 34892366 + 0 NA Intergenic Intergenic 14255 ENSMUSG00000026123.11 ENSMUSG00000026123 ENSMUST00000191722 Plekhb2 protein_coding Interval_88760 chr2 10355311 10355533 + 0 NA intron (ENSMUSG00000086748.1, intron 1 of 3) processed_transcript-intron (ENSMUSG00000086748.1, intron 1 of 3) -17026 ENSMUSG00000061186.15 ENSMUSG00000061186 ENSMUST00000041105 Sfmbt2 protein_coding Interval_58596 chr15 36468986 36470111 + 0 NA Intergenic Intergenic 27167 ENSMUSG00000048307.8 ENSMUSG00000048307 ENSMUST00000228941 Ankrd46 protein_coding Interval_171703 chr9 120303082 120304992 + 0 NA exon (ENSMUSG00000041794.13, exon 1 of 17) protein_coding-exon (ENSMUSG00000041794.13, exon 1 of 17) -12291 ENSMUSG00000083772.1 ENSMUSG00000083772 ENSMUST00000121130 Gm15566 processed_pseudogene Interval_25601 chr11 50152447 50152877 + 0 NA exon (ENSMUSG00000036644.15, exon 10 of 21) protein_coding-exon (ENSMUSG00000036644.15, exon 10 of 21) 6090 ENSMUSG00000036644.15 ENSMUSG00000036644 ENSMUST00000141520 Tbc1d9b protein_coding Interval_51682 chr14 31336249 31337222 + 0 NA promoter-TSS (ENSMUSG00000021893.14) protein_coding-promoter-TSS (ENSMUSG00000021893.14) -10729 ENSMUSG00000115445.1 ENSMUSG00000115445 ENSMUST00000226792 Gm49791 lincRNA Interval_136066 chr6 50409255 50409508 + 0 NA intron (ENSMUSG00000029822.15, intron 1 of 5) protein_coding-intron (ENSMUSG00000029822.15, intron 2 of 21) -57424 ENSMUSG00000029822.15 ENSMUSG00000029822 ENSMUST00000154333 Osbpl3 protein_coding Interval_42701 chr13 18177078 18177465 + 0 NA intron (ENSMUSG00000009734.18, intron 3 of 5) protein_coding-intron (ENSMUSG00000009734.18, intron 3 of 7) -77069 ENSMUSG00000113470.1 ENSMUSG00000113470 ENSMUST00000220795 4930448F12Rik lincRNA Interval_162403 chr8 128065682 128066503 + 0 NA Intergenic Intergenic 212133 ENSMUSG00000099326.1 ENSMUSG00000099326 ENSMUST00000184910 Mir21c miRNA Interval_68027 chr16 64135800 64136510 + 0 NA Intergenic Intergenic -181025 ENSMUSG00000116722.1 ENSMUSG00000116722 ENSMUST00000231945 Gm49627 processed_pseudogene Interval_161063 chr8 117251153 117251506 + 0 NA Intergenic Intergenic 93192 ENSMUSG00000052557.11 ENSMUSG00000052557 ENSMUST00000162997 Gan protein_coding Interval_58649 chr15 36809091 36810225 + 0 NA Intergenic Intergenic -10887 ENSMUSG00000093021.1 ENSMUSG00000093021 ENSMUST00000175280 Gm25303 miRNA Interval_49345 chr13 111397290 111398272 + 0 NA Intergenic Intergenic -29101 ENSMUSG00000086201.1 ENSMUSG00000086201 ENSMUST00000132731 Gm6270 lincRNA Interval_119222 chr4 136290385 136292169 + 0 NA TTS (ENSMUSG00000051351.14) protein_coding-TTS (ENSMUSG00000051351.14) 6594 ENSMUSG00000051351.14 ENSMUSG00000051351 ENSMUST00000130658 Zfp46 protein_coding Interval_160021 chr8 105850163 105852434 + 0 NA intron (ENSMUSG00000036672.5, intron 1 of 2) protein_coding-intron (ENSMUSG00000036672.5, intron 1 of 12) 671 ENSMUSG00000036672.5 ENSMUSG00000036672 ENSMUST00000212552 Cenpt protein_coding Interval_20611 chr10 119452968 119455596 + 0 NA exon (ENSMUSG00000034813.18, exon 1 of 23) protein_coding-exon (ENSMUSG00000034813.18, exon 1 of 23) 548 ENSMUSG00000085454.1 ENSMUSG00000085454 ENSMUST00000146294 Grip1os3 antisense Interval_173600 chrX 100735697 100736298 + 0 NA promoter-TSS (ENSMUSG00000019359.14) protein_coding-promoter-TSS (ENSMUSG00000019359.14) 4932 ENSMUSG00000085314.1 ENSMUSG00000085314 ENSMUST00000149206 Gm14866 processed_transcript Interval_54992 chr14 76720584 76720816 + 0 NA Intergenic Intergenic -39431 ENSMUSG00000115709.1 ENSMUSG00000115709 ENSMUST00000228541 4930431P22Rik lincRNA Interval_26821 chr11 60850830 60851594 + 0 NA intron (ENSMUSG00000042569.13, intron 3 of 6) protein_coding-intron (ENSMUSG00000042569.13, intron 3 of 6) 20533 ENSMUSG00000042569.13 ENSMUSG00000042569 ENSMUST00000108718 Dhrs7b protein_coding Interval_41441 chr12 113981390 113982276 + 0 NA TTS (ENSMUSG00000094533.1) IG_V_gene-TTS (ENSMUSG00000094533.1) 508 ENSMUSG00000094533.1 ENSMUSG00000094533 ENSMUST00000103466 Ighv11-1 IG_V_gene Interval_142220 chr6 139127679 139128560 + 0 NA Intergenic Intergenic -9008 ENSMUSG00000108178.1 ENSMUSG00000108178 ENSMUST00000204132 Gm44267 TEC Interval_14449 chr10 33945482 33946082 + 0 NA intron (ENSMUSG00000039531.8, intron 1 of 6) protein_coding-intron (ENSMUSG00000039531.8, intron 3 of 9) -12442 ENSMUSG00000039531.8 ENSMUSG00000039531 ENSMUST00000218892 Zup1 protein_coding Interval_126860 chr5 95973400 95974557 + 0 NA promoter-TSS (ENSMUSG00000107092.1) processed_pseudogene-promoter-TSS (ENSMUSG00000107092.1) -262 ENSMUSG00000107092.1 ENSMUSG00000107092 ENSMUST00000200970 Gm7993 processed_pseudogene Interval_97664 chr2 142427128 142427322 + 0 NA Intergenic Intergenic 45237 ENSMUSG00000089318.1 ENSMUSG00000089318 ENSMUST00000158693 Gm23179 misc_RNA Interval_126959 chr5 98363430 98363947 + 0 NA intron (ENSMUSG00000057816.7, intron 2 of 6) protein_coding-intron (ENSMUSG00000057816.7, intron 2 of 5) 17294 ENSMUSG00000104545.1 ENSMUSG00000104545 ENSMUST00000198813 E030032P16Rik TEC Interval_118469 chr4 131872995 131874519 + 0 NA promoter-TSS (ENSMUSG00000028911.16) protein_coding-promoter-TSS (ENSMUSG00000028911.16) -4871 ENSMUSG00000102602.1 ENSMUSG00000102602 ENSMUST00000192689 A930004J17Rik TEC Interval_22497 chr11 11140781 11141263 + 0 NA TTS (ENSMUSG00000088861.1) rRNA-TTS (ENSMUSG00000088861.1) 508 ENSMUSG00000088861.1 ENSMUSG00000088861 ENSMUST00000158236 Gm23065 rRNA Interval_27332 chr11 66567378 66569313 + 0 NA Intergenic Intergenic 4738 ENSMUSG00000080978.2 ENSMUSG00000080978 ENSMUST00000121380 Gm12297 processed_pseudogene Interval_71224 chr17 21374951 21376326 + 0 NA exon (ENSMUSG00000116768.1, exon 3 of 3) processed_pseudogene-exon (ENSMUSG00000116768.1, exon 3 of 3) -8110 ENSMUSG00000062743.9 ENSMUSG00000062743 ENSMUST00000162659 Zfp677 protein_coding Interval_33621 chr11 117566034 117566317 + 0 NA Intergenic Intergenic 42572 ENSMUSG00000085419.1 ENSMUSG00000085419 ENSMUST00000132261 Gm11734 lincRNA Interval_32922 chr11 113136835 113138094 + 0 NA intron (ENSMUSG00000087259.7, intron 1 of 3) lincRNA-intron (ENSMUSG00000087259.7, intron 1 of 2) 35613 ENSMUSG00000087259.7 ENSMUSG00000087259 ENSMUST00000150712 2610035D17Rik lincRNA Interval_27688 chr11 69491337 69492254 + 0 NA intron (ENSMUSG00000005237.14, intron 21 of 85) protein_coding-intron (ENSMUSG00000005237.14, intron 20 of 84) 13640 ENSMUSG00000098432.1 ENSMUSG00000098432 ENSMUST00000184128 Gm27493 miRNA Interval_33206 chr11 115219134 115219884 + 0 NA intron (ENSMUSG00000045980.13, intron 8 of 8) protein_coding-intron (ENSMUSG00000045980.13, intron 8 of 9) 31958 ENSMUSG00000045980.13 ENSMUSG00000045980 ENSMUST00000156230 Tmem104 protein_coding Interval_126642 chr5 91517327 91518697 + 0 NA intron (ENSMUSG00000034981.9, intron 1 of 3) protein_coding-intron (ENSMUSG00000034981.9, intron 1 of 3) 397 ENSMUSG00000034981.9 ENSMUSG00000034981 ENSMUST00000040576 Parm1 protein_coding Interval_150329 chr7 109643433 109643957 + 0 NA intron (ENSMUSG00000031024.13, intron 1 of 3) protein_coding-intron (ENSMUSG00000031024.13, intron 1 of 3) -26942 ENSMUSG00000031024.13 ENSMUSG00000031024 ENSMUST00000208734 Denn2b protein_coding Interval_173740 chrX 103341490 103342368 + 0 NA Intergenic Intergenic 5099 ENSMUSG00000081280.1 ENSMUSG00000081280 ENSMUST00000119684 Gm9516 processed_pseudogene Interval_83531 chr18 88907885 88908267 + 0 NA intron (ENSMUSG00000056153.15, intron 1 of 2) protein_coding-intron (ENSMUSG00000056153.15, intron 1 of 2) 7165 ENSMUSG00000118089.1 ENSMUSG00000118089 ENSMUST00000236358 Gm50406 processed_pseudogene Interval_89265 chr2 18626218 18626558 + 0 NA Intergenic Intergenic 15714 ENSMUSG00000082943.1 ENSMUSG00000082943 ENSMUST00000117996 Gm13355 processed_pseudogene Interval_40448 chr12 104939416 104939985 + 0 NA intron (ENSMUSG00000054150.12, intron 16 of 17) protein_coding-intron (ENSMUSG00000054150.12, intron 15 of 16) -13011 ENSMUSG00000100975.2 ENSMUSG00000100975 ENSMUST00000185486 Gm28875 lincRNA Interval_127610 chr5 105765962 105766328 + 0 NA intron (ENSMUSG00000046079.16, intron 1 of 2) protein_coding-intron (ENSMUSG00000046079.16, intron 2 of 2) 31568 ENSMUSG00000067058.7 ENSMUSG00000067058 ENSMUST00000132586 Rps15a-ps5 processed_pseudogene Interval_117332 chr4 123028295 123028849 + 0 NA intron (ENSMUSG00000028653.16, intron 1 of 9) protein_coding-intron (ENSMUSG00000028653.16, intron 1 of 10) 11975 ENSMUSG00000028653.16 ENSMUSG00000028653 ENSMUST00000141855 Trit1 protein_coding Interval_78480 chr18 13525529 13526587 + 0 NA intron (ENSMUSG00000117608.1, intron 5 of 5) lincRNA-intron (ENSMUSG00000117608.1, intron 5 of 5) 75342 ENSMUSG00000117608.1 ENSMUSG00000117608 ENSMUST00000234112 AC103362.1 lincRNA Interval_79798 chr18 35167541 35168054 + 0 NA intron (ENSMUSG00000037815.7, intron 3 of 3) protein_coding-intron (ENSMUSG00000037815.7, intron 3 of 17) 47227 ENSMUSG00000071862.3 ENSMUSG00000071862 ENSMUST00000236680 Lrrtm2 protein_coding Interval_84943 chr19 19435333 19436181 + 0 NA Intergenic Intergenic 159286 ENSMUSG00000118109.1 ENSMUSG00000118109 ENSMUST00000237424 Gm41815 lincRNA Interval_56165 chr14 109345510 109346098 + 0 NA Intergenic Intergenic -177295 ENSMUSG00000115642.1 ENSMUSG00000115642 ENSMUST00000227701 Gm18977 processed_pseudogene Interval_36918 chr12 55333437 55333939 + 0 NA intron (ENSMUSG00000021023.14, intron 3 of 6) protein_coding-intron (ENSMUSG00000021023.14, intron 3 of 6) 34111 ENSMUSG00000021023.14 ENSMUSG00000021023 ENSMUST00000183654 Prorp protein_coding Interval_98515 chr2 152914203 152915132 + 0 NA intron (ENSMUSG00000027470.9, intron 3 of 11) protein_coding-intron (ENSMUSG00000027470.9, intron 3 of 11) 3315 ENSMUSG00000027470.9 ENSMUSG00000027470 ENSMUST00000028970 Mylk2 protein_coding Interval_68132 chr16 65536659 65537503 + 0 NA Intergenic Intergenic -10910 ENSMUSG00000116699.1 ENSMUSG00000116699 ENSMUST00000232553 Gm49631 lincRNA Interval_92377 chr2 59367896 59368152 + 0 NA Intergenic Intergenic 19447 ENSMUSG00000087455.7 ENSMUSG00000087455 ENSMUST00000155111 5330411J11Rik processed_transcript Interval_80154 chr18 37892403 37893017 + 0 NA intron (ENSMUSG00000024456.16, intron 13 of 26) protein_coding-intron (ENSMUSG00000024456.16, intron 14 of 27) 5232 ENSMUSG00000024456.16 ENSMUSG00000024456 ENSMUST00000129688 Diaph1 protein_coding Interval_116756 chr4 117113415 117114032 + 0 NA exon (ENSMUSG00000028681.11, exon 1 of 3) protein_coding-exon (ENSMUSG00000028681.11, exon 1 of 3) 8803 ENSMUSG00000028681.11 ENSMUSG00000028681 ENSMUST00000123226 Ptch2 protein_coding Interval_162478 chr8 129257300 129257501 + 0 NA Intergenic Intergenic 4402 ENSMUSG00000094530.2 ENSMUSG00000094530 ENSMUST00000180210 Gm21399 processed_pseudogene Interval_32339 chr11 107051151 107051462 + 0 NA intron (ENSMUSG00000040481.17, intron 1 of 1) protein_coding-intron (ENSMUSG00000040481.17, intron 23 of 27) -3963 ENSMUSG00000040481.17 ENSMUSG00000040481 ENSMUST00000149486 Bptf protein_coding Interval_28436 chr11 75864681 75866081 + 0 NA intron (ENSMUSG00000020847.15, intron 5 of 8) protein_coding-intron (ENSMUSG00000020847.15, intron 4 of 7) 4412 ENSMUSG00000087322.1 ENSMUSG00000087322 ENSMUST00000135873 Gm16075 antisense Interval_3696 chr1 61095800 61096184 + 0 NA Intergenic Intergenic 20318 ENSMUSG00000082804.3 ENSMUSG00000082804 ENSMUST00000119156 Rpl17-ps1 processed_pseudogene Interval_58015 chr15 26177529 26178004 + 0 NA Intergenic Intergenic -115328 ENSMUSG00000115335.1 ENSMUSG00000115335 ENSMUST00000227975 Gm41279 lincRNA Interval_63530 chr15 101811695 101812464 + 0 NA intron (ENSMUSG00000064201.8, intron 7 of 8) protein_coding-intron (ENSMUSG00000064201.8, intron 7 of 8) 6090 ENSMUSG00000064201.8 ENSMUSG00000064201 ENSMUST00000023712 Krt2 protein_coding Interval_160733 chr8 111877863 111878097 + 0 NA Intergenic Intergenic -1230 ENSMUSG00000031953.2 ENSMUSG00000031953 ENSMUST00000034431 Tmem170 protein_coding Interval_114255 chr4 70191667 70192642 + 0 NA Intergenic Intergenic 57219 ENSMUSG00000080902.1 ENSMUSG00000080902 ENSMUST00000120944 Ywhaq-ps3 transcribed_processed_pseudogene Interval_89070 chr2 15452534 15452796 + 0 NA Intergenic Intergenic -29247 ENSMUSG00000081389.2 ENSMUSG00000081389 ENSMUST00000122443 Gm13368 processed_pseudogene Interval_6665 chr1 118625378 118628551 + 0 NA promoter-TSS (ENSMUSG00000026380.10) protein_coding-promoter-TSS (ENSMUSG00000026380.10) -981 ENSMUSG00000026380.10 ENSMUSG00000026380 ENSMUST00000027629 Tfcp2l1 protein_coding Interval_40143 chr12 101937224 101938563 + 0 NA intron (ENSMUSG00000021189.11, intron 6 of 8) protein_coding-intron (ENSMUSG00000021189.11, intron 6 of 10) 20350 ENSMUSG00000021189.11 ENSMUSG00000021189 ENSMUST00000159883 Atxn3 protein_coding Interval_18563 chr10 87771252 87771605 + 0 NA Intergenic Intergenic 82850 ENSMUSG00000112536.1 ENSMUSG00000112536 ENSMUST00000218613 Gm48195 processed_pseudogene Interval_119856 chr4 140521499 140521809 + 0 NA intron (ENSMUSG00000040964.16, intron 12 of 15) protein_coding-intron (ENSMUSG00000040964.16, intron 25 of 27) -75490 ENSMUSG00000118416.1 ENSMUSG00000118416 ENSMUST00000238366 Gm50453 unitary_pseudogene Interval_890 chr1 13026146 13026945 + 0 NA Intergenic Intergenic 33406 ENSMUSG00000104518.1 ENSMUSG00000104518 ENSMUST00000191708 Gm37162 TEC Interval_72882 chr17 32901627 32902952 + 0 NA Intergenic Intergenic -10756 ENSMUSG00000095325.3 ENSMUSG00000095325 ENSMUST00000228410 Zfp870 protein_coding Interval_132195 chr5 143279478 143279897 + 0 NA Intergenic Intergenic 9612 ENSMUSG00000105345.1 ENSMUSG00000105345 ENSMUST00000199606 BC030343 lincRNA Interval_74620 chr17 53872373 53872623 + 0 NA Intergenic Intergenic 3052 ENSMUSG00000105732.1 ENSMUSG00000105732 ENSMUST00000200231 Sult1c2-ps1 unprocessed_pseudogene Interval_135261 chr6 37905992 37906309 + 0 NA intron (ENSMUSG00000029833.17, intron 2 of 3) protein_coding-intron (ENSMUSG00000029833.17, intron 2 of 18) 35339 ENSMUSG00000029833.17 ENSMUSG00000029833 ENSMUST00000135387 Trim24 protein_coding Interval_73647 chr17 42307693 42307917 + 0 NA Intergenic Intergenic -8184 ENSMUSG00000042256.5 ENSMUSG00000042256 ENSMUST00000232968 Ptchd4 protein_coding Interval_157649 chr8 72024633 72025126 + 0 NA Intergenic Intergenic -10366 ENSMUSG00000110546.1 ENSMUSG00000110546 ENSMUST00000211916 Gm45734 processed_pseudogene Interval_56534 chr14 120113252 120113502 + 0 NA intron (ENSMUSG00000115146.1, intron 6 of 8) lincRNA-intron (ENSMUSG00000115146.1, intron 6 of 8) 17226 ENSMUSG00000114983.1 ENSMUSG00000114983 ENSMUST00000227459 Gm48997 lincRNA Interval_156323 chr8 47377986 47378664 + 0 NA intron (ENSMUSG00000038143.16, intron 7 of 7) protein_coding-intron (ENSMUSG00000038143.16, intron 7 of 7) 35512 ENSMUSG00000038143.16 ENSMUSG00000038143 ENSMUST00000181417 Stox2 protein_coding Interval_143576 chr7 12933413 12934838 + 0 NA Intergenic Intergenic 3351 ENSMUSG00000065006.1 ENSMUSG00000065006 ENSMUST00000083072 Gm26325 snRNA Interval_84939 chr19 19241263 19241824 + 0 NA Intergenic Intergenic -34356 ENSMUSG00000088907.1 ENSMUSG00000088907 ENSMUST00000158282 Gm25437 snoRNA Interval_82051 chr18 67369580 67370474 + 0 NA Intergenic Intergenic -22240 ENSMUSG00000001473.7 ENSMUSG00000001473 ENSMUST00000236667 Tubb6 protein_coding Interval_38318 chr12 77124084 77124982 + 0 NA Intergenic Intergenic -8101 ENSMUSG00000093114.1 ENSMUSG00000093114 ENSMUST00000175373 Gm22696 miRNA Interval_166116 chr9 56830104 56830942 + 0 NA Intergenic Intergenic -29262 ENSMUSG00000111037.1 ENSMUSG00000111037 ENSMUST00000215507 Gm47235 lincRNA Interval_77825 chr18 4236204 4236505 + 0 NA Intergenic Intergenic -37416 ENSMUSG00000073647.4 ENSMUSG00000073647 ENSMUST00000097690 Gm10557 processed_pseudogene Interval_30961 chr11 97440015 97440642 + 0 NA intron (ENSMUSG00000049807.16, intron 2 of 2) protein_coding-intron (ENSMUSG00000049807.16, intron 1 of 23) 4043 ENSMUSG00000049807.16 ENSMUSG00000049807 ENSMUST00000093940 Arhgap23 protein_coding Interval_131313 chr5 136351367 136351595 + 0 NA intron (ENSMUSG00000029705.17, intron 8 of 20) protein_coding-intron (ENSMUSG00000029705.17, intron 8 of 23) -1250 ENSMUSG00000102415.1 ENSMUSG00000102415 ENSMUST00000195666 A430110C17Rik TEC Interval_16276 chr10 61866252 61866640 + 0 NA promoter-TSS (ENSMUSG00000058806.15) protein_coding-promoter-TSS (ENSMUSG00000058806.15) -17235 ENSMUSG00000058806.15 ENSMUSG00000058806 ENSMUST00000153120 Col13a1 protein_coding Interval_120673 chr4 150030454 150031194 + 0 NA Intergenic Intergenic -18189 ENSMUSG00000086665.1 ENSMUSG00000086665 ENSMUST00000134236 Gm13067 lincRNA Interval_29956 chr11 88365245 88368646 + 0 NA intron (ENSMUSG00000069769.13, intron 5 of 5) protein_coding-intron (ENSMUSG00000069769.13, intron 10 of 13) 10654 ENSMUSG00000085246.1 ENSMUSG00000085246 ENSMUST00000143208 Gm15893 antisense Interval_151696 chr7 126108646 126108852 + 0 NA intron (ENSMUSG00000000131.15, intron 16 of 20) protein_coding-intron (ENSMUSG00000000131.15, intron 19 of 23) -26338 ENSMUSG00000046182.8 ENSMUSG00000046182 ENSMUST00000073935 Gsg1l protein_coding Interval_115458 chr4 99120252 99121486 + 0 NA promoter-TSS (ENSMUSG00000028556.15) protein_coding-promoter-TSS (ENSMUSG00000028556.15) 4455 ENSMUSG00000087395.1 ENSMUSG00000087395 ENSMUST00000129460 Gm12705 antisense Interval_22274 chr11 8476462 8477038 + 0 NA intron (ENSMUSG00000020422.14, intron 20 of 30) protein_coding-intron (ENSMUSG00000020422.14, intron 20 of 30) -92897 ENSMUSG00000083553.1 ENSMUSG00000083553 ENSMUST00000117240 Gm11989 processed_pseudogene Interval_123533 chr5 33281627 33282310 + 0 NA Intergenic Intergenic -6987 ENSMUSG00000037373.12 ENSMUSG00000037373 ENSMUST00000202190 Ctbp1 protein_coding Interval_70307 chr17 8388507 8390082 + 0 NA intron (ENSMUSG00000058159.14, intron 2 of 9) processed_transcript-intron (ENSMUSG00000117569.1, intron 2 of 5) -4634 ENSMUSG00000116704.1 ENSMUSG00000116704 ENSMUST00000231828 Gm5491 processed_pseudogene Interval_24241 chr11 31734795 31735624 + 0 NA Intergenic Intergenic 36561 ENSMUSG00000103635.1 ENSMUSG00000103635 ENSMUST00000192490 Gm38061 TEC Interval_160345 chr8 108612125 108613167 + 0 NA intron (ENSMUSG00000038872.10, intron 1 of 3) protein_coding-intron (ENSMUSG00000038872.10, intron 4 of 15) -28051 ENSMUSG00000110613.1 ENSMUSG00000110613 ENSMUST00000211953 Lncbate1 lincRNA Interval_90750 chr2 32282687 32283156 + 0 NA promoter-TSS (ENSMUSG00000044627.11) protein_coding-promoter-TSS (ENSMUSG00000044627.11) 5147 ENSMUSG00000044627.11 ENSMUSG00000044627 ENSMUST00000127131 Swi5 protein_coding Interval_130784 chr5 130369235 130369596 + 0 NA promoter-TSS (ENSMUSG00000060371.12) protein_coding-promoter-TSS (ENSMUSG00000060371.12) 15215 ENSMUSG00000052014.6 ENSMUSG00000052014 ENSMUST00000063656 A330070K13Rik protein_coding Interval_87068 chr19 45923410 45924091 + 0 NA intron (ENSMUSG00000039901.10, intron 3 of 3) protein_coding-intron (ENSMUSG00000039901.10, intron 19 of 25) 12679 ENSMUSG00000039901.10 ENSMUSG00000039901 ENSMUST00000236730 Armh3 protein_coding Interval_38431 chr12 79006490 79007687 + 0 NA promoter-TSS (ENSMUSG00000046157.13) protein_coding-promoter-TSS (ENSMUSG00000046157.13) 252 ENSMUSG00000046157.13 ENSMUSG00000046157 ENSMUST00000173095 Tmem229b protein_coding Interval_53198 chr14 55071524 55072441 + 0 NA exon (ENSMUSG00000040721.9, exon 4 of 10) protein_coding-exon (ENSMUSG00000040721.9, exon 4 of 10) 16489 ENSMUSG00000100162.2 ENSMUSG00000100162 ENSMUST00000185121 Gm20687 antisense Interval_114131 chr4 63947996 63949280 + 0 NA Intergenic Intergenic -52539 ENSMUSG00000084345.3 ENSMUSG00000084345 ENSMUST00000120241 Rpl17-ps4 processed_pseudogene Interval_32851 chr11 111992095 111992335 + 0 NA Intergenic Intergenic 51363 ENSMUSG00000081088.1 ENSMUSG00000081088 ENSMUST00000121830 Gm11679 processed_pseudogene Interval_107676 chr3 110136177 110136406 + 0 NA promoter-TSS (ENSMUSG00000059857.15) protein_coding-promoter-TSS (ENSMUSG00000059857.15) 108337 ENSMUSG00000105639.1 ENSMUSG00000105639 ENSMUST00000198691 Gm42516 TEC Interval_39488 chr12 88402486 88402692 + 0 NA intron (ENSMUSG00000021044.15, intron 4 of 10) protein_coding-intron (ENSMUSG00000021044.15, intron 4 of 10) -17707 ENSMUSG00000021044.15 ENSMUSG00000021044 ENSMUST00000223538 Adck1 protein_coding Interval_144184 chr7 19843081 19844062 + 0 NA Intergenic Intergenic -3402 ENSMUSG00000109424.1 ENSMUSG00000109424 ENSMUST00000207965 Gm44658 lincRNA Interval_131442 chr5 137212240 137212500 + 0 NA promoter-TSS (ENSMUSG00000094840.5) protein_coding-promoter-TSS (ENSMUSG00000094840.5) -222 ENSMUSG00000094840.5 ENSMUSG00000094840 ENSMUST00000179412 Muc3a protein_coding Interval_16127 chr10 60878180 60878363 + 0 NA Intergenic Intergenic -44752 ENSMUSG00000099279.1 ENSMUSG00000099279 ENSMUST00000183643 Mir6408 miRNA Interval_123887 chr5 36321703 36322195 + 0 NA intron (ENSMUSG00000029093.14, intron 1 of 7) protein_coding-intron (ENSMUSG00000029093.14, intron 1 of 26) 20379 ENSMUSG00000098884.1 ENSMUSG00000098884 ENSMUST00000184943 Mir7689 miRNA Interval_34708 chr12 8857467 8858000 + 0 NA Intergenic Intergenic 19649 ENSMUSG00000042976.6 ENSMUSG00000042976 ENSMUST00000218928 9930038B18Rik lincRNA Interval_113579 chr4 56809427 56809651 + 0 NA TTS (ENSMUSG00000038827.11) protein_coding-TTS (ENSMUSG00000038827.11) 7194 ENSMUSG00000038827.11 ENSMUSG00000038827 ENSMUST00000147763 Abitram protein_coding Interval_98019 chr2 146794874 146795144 + 0 NA Intergenic Intergenic -39304 ENSMUSG00000080870.1 ENSMUSG00000080870 ENSMUST00000119851 Gm14111 processed_pseudogene Interval_96459 chr2 123813646 123814148 + 0 NA Intergenic Intergenic 316059 ENSMUSG00000085496.1 ENSMUSG00000085496 ENSMUST00000129584 4930517E11Rik lincRNA Interval_24684 chr11 35892236 35893751 + 0 NA intron (ENSMUSG00000018849.6, intron 5 of 22) protein_coding-intron (ENSMUSG00000018849.6, intron 5 of 22) -39439 ENSMUSG00000018849.6 ENSMUSG00000018849 ENSMUST00000127086 Wwc1 protein_coding Interval_47168 chr13 76975574 76975850 + 0 NA intron (ENSMUSG00000021596.16, intron 17 of 20) protein_coding-intron (ENSMUSG00000021596.16, intron 17 of 20) 40549 ENSMUSG00000090119.1 ENSMUSG00000090119 ENSMUST00000160999 Gm8185 processed_pseudogene Interval_29009 chr11 79889254 79889889 + 0 NA Intergenic Intergenic 4144 ENSMUSG00000065283.1 ENSMUSG00000065283 ENSMUST00000083349 Gm24454 snoRNA Interval_100265 chr2 168052669 168052928 + 0 NA Intergenic Intergenic 12099 ENSMUSG00000092849.1 ENSMUSG00000092849 ENSMUST00000175108 Gm24327 miRNA Interval_169839 chr9 102400808 102401056 + 0 NA Intergenic Intergenic 27814 ENSMUSG00000088138.1 ENSMUSG00000088138 ENSMUST00000157513 Gm22894 snRNA Interval_88737 chr2 10091979 10092350 + 0 NA TTS (ENSMUSG00000037262.7) protein_coding-TTS (ENSMUSG00000037262.7) 1867 ENSMUSG00000037262.7 ENSMUSG00000037262 ENSMUST00000142773 Kin protein_coding Interval_7116 chr1 126183449 126184111 + 0 NA intron (ENSMUSG00000049690.15, intron 5 of 10) protein_coding-intron (ENSMUSG00000049690.15, intron 4 of 12) -112319 ENSMUSG00000102723.1 ENSMUSG00000102723 ENSMUST00000194647 Gm37936 TEC Interval_31058 chr11 97933376 97934185 + 0 NA intron (ENSMUSG00000017417.14, intron 10 of 13) protein_coding-intron (ENSMUSG00000017417.14, intron 10 of 13) 7960 ENSMUSG00000093013.1 ENSMUSG00000093013 ENSMUST00000175272 Gm22461 miRNA Interval_133122 chr5 150005686 150005932 + 0 NA Intergenic Intergenic -2495 ENSMUSG00000107056.1 ENSMUSG00000107056 ENSMUST00000202470 Gm21048 processed_pseudogene Interval_163064 chr9 14945641 14945900 + 0 NA Intergenic Intergenic -3693 ENSMUSG00000110766.1 ENSMUSG00000110766 ENSMUST00000217210 Gm47214 lincRNA Interval_22745 chr11 14371489 14371860 + 0 NA Intergenic Intergenic -115939 ENSMUSG00000080734.1 ENSMUSG00000080734 ENSMUST00000120786 Gm12006 processed_pseudogene Interval_39088 chr12 84962790 84963088 + 0 NA intron (ENSMUSG00000042350.13, intron 1 of 2) protein_coding-intron (ENSMUSG00000042350.13, intron 1 of 19) -16016 ENSMUSG00000042350.13 ENSMUSG00000042350 ENSMUST00000168713 Arel1 protein_coding Interval_127512 chr5 104761697 104762000 + 0 NA Intergenic Intergenic -13931 ENSMUSG00000048334.8 ENSMUSG00000048334 ENSMUST00000055593 Gm8258 processed_pseudogene Interval_155154 chr8 27106752 27107692 + 0 NA intron (ENSMUSG00000031486.15, intron 2 of 15) protein_coding-intron (ENSMUSG00000031486.15, intron 2 of 18) -10147 ENSMUSG00000031486.15 ENSMUSG00000031486 ENSMUST00000179351 Adgra2 protein_coding Interval_144297 chr7 24359173 24359566 + 0 NA Intergenic Intergenic 10173 ENSMUSG00000030484.5 ENSMUSG00000030484 ENSMUST00000032683 Lypd5 protein_coding Interval_38922 chr12 83830568 83831158 + 0 NA promoter-TSS (ENSMUSG00000114150.1) processed_transcript-promoter-TSS (ENSMUSG00000114150.1) 7408 ENSMUSG00000114150.1 ENSMUSG00000114150 ENSMUST00000221695 Gm46367 processed_transcript Interval_93124 chr2 70442621 70442882 + 0 NA Intergenic Intergenic -16231 ENSMUSG00000047965.9 ENSMUSG00000047965 ENSMUST00000140507 Rpl9-ps7 processed_pseudogene Interval_8770 chr1 150805441 150805824 + 0 NA intron (ENSMUSG00000066842.18, intron 9 of 105) protein_coding-intron (ENSMUSG00000066842.18, intron 9 of 106) 180333 ENSMUSG00000093650.2 ENSMUSG00000093650 ENSMUST00000177268 Gm20631 antisense Interval_662 chr1 9682976 9683274 + 0 NA exon (ENSMUSG00000025912.16, exon 7 of 16) protein_coding-exon (ENSMUSG00000025912.16, exon 7 of 16) 16529 ENSMUSG00000025912.16 ENSMUSG00000025912 ENSMUST00000188212 Mybl1 protein_coding Interval_131294 chr5 136218837 136219305 + 0 NA exon (ENSMUSG00000005057.13, exon 9 of 9) protein_coding-exon (ENSMUSG00000005057.13, exon 9 of 9) 3591 ENSMUSG00000005057.13 ENSMUSG00000005057 ENSMUST00000196245 Sh2b2 protein_coding Interval_121102 chr4 153058373 153059288 + 0 NA Intergenic Intergenic -45246 ENSMUSG00000080360.1 ENSMUSG00000080360 ENSMUST00000116710 Gm25779 miRNA Interval_124181 chr5 39335920 39336117 + 0 NA Intergenic Intergenic 1798 ENSMUSG00000106876.1 ENSMUSG00000106876 ENSMUST00000202519 Gm43456 processed_pseudogene Interval_70071 chr17 5131967 5133308 + 0 NA intron (ENSMUSG00000069729.14, intron 4 of 19) protein_coding-intron (ENSMUSG00000069729.14, intron 4 of 18) -20527 ENSMUSG00000081783.2 ENSMUSG00000081783 ENSMUST00000122283 Gm15599 processed_pseudogene Interval_126700 chr5 92127038 92129858 + 0 NA Intergenic Intergenic -10165 ENSMUSG00000088949.1 ENSMUSG00000088949 ENSMUST00000158324 Gm24931 rRNA Interval_53122 chr14 54583586 54584549 + 0 NA TTS (ENSMUSG00000022179.5) protein_coding-TTS (ENSMUSG00000022179.5) 1432 ENSMUSG00000022179.5 ENSMUSG00000022179 ENSMUST00000228422 4931414P19Rik protein_coding Interval_45539 chr13 55713919 55715365 + 0 NA promoter-TSS (ENSMUSG00000021497.10) protein_coding-promoter-TSS (ENSMUSG00000021497.10) -3197 ENSMUSG00000021497.10 ENSMUSG00000021497 ENSMUST00000223649 Txndc15 protein_coding Interval_173715 chrX 102643492 102644971 + 0 NA promoter-TSS (ENSMUSG00000034055.16) protein_coding-promoter-TSS (ENSMUSG00000034055.16) 15 ENSMUSG00000034055.16 ENSMUSG00000034055 ENSMUST00000142534 Phka1 protein_coding Interval_171729 chr9 120550908 120551165 + 0 NA intron (ENSMUSG00000041608.8, intron 3 of 10) protein_coding-intron (ENSMUSG00000041608.8, intron 3 of 10) -6998 ENSMUSG00000041608.8 ENSMUSG00000041608 ENSMUST00000143579 Entpd3 protein_coding Interval_82617 chr18 75456171 75457338 + 0 NA intron (ENSMUSG00000052928.9, intron 10 of 11) protein_coding-intron (ENSMUSG00000052928.9, intron 10 of 11) -57891 ENSMUSG00000097712.1 ENSMUSG00000097712 ENSMUST00000181913 Gm10532 antisense Interval_124485 chr5 48779793 48780163 + 0 NA intron (ENSMUSG00000029088.16, intron 1 of 8) protein_coding-intron (ENSMUSG00000029088.16, intron 1 of 8) 11988 ENSMUSG00000105454.1 ENSMUSG00000105454 ENSMUST00000198760 Gm43830 TEC Interval_85451 chr19 26639779 26641096 + 0 NA exon (ENSMUSG00000024921.17, exon 5 of 33) protein_coding-exon (ENSMUSG00000024921.17, exon 5 of 33) -17027 ENSMUSG00000093628.1 ENSMUSG00000093628 ENSMUST00000177453 Gm20616 antisense Interval_152730 chr7 136959690 136960811 + 0 NA intron (ENSMUSG00000054612.4, intron 2 of 4) protein_coding-intron (ENSMUSG00000054612.4, intron 2 of 4) 39309 ENSMUSG00000109721.1 ENSMUSG00000109721 ENSMUST00000210484 Gm45280 TEC Interval_157593 chr8 71595853 71596642 + 0 NA TTS (ENSMUSG00000031807.10) protein_coding-TTS (ENSMUSG00000031807.10) -1401 ENSMUSG00000043243.15 ENSMUSG00000043243 ENSMUST00000125339 Fam129c protein_coding Interval_106728 chr3 100140160 100140552 + 0 NA intron (ENSMUSG00000033285.15, intron 1 of 3) protein_coding-intron (ENSMUSG00000033285.15, intron 24 of 26) 22041 ENSMUSG00000033285.15 ENSMUSG00000033285 ENSMUST00000197602 Wdr3 protein_coding Interval_93950 chr2 79856328 79856982 + 0 NA intron (ENSMUSG00000059173.19, intron 13 of 15) protein_coding-intron (ENSMUSG00000059173.19, intron 14 of 15) 70064 ENSMUSG00000034683.12 ENSMUSG00000034683 ENSMUST00000144432 Ppp1r1c protein_coding Interval_164842 chr9 42413919 42414309 + 0 NA exon (ENSMUSG00000037287.15, exon 8 of 8) protein_coding-exon (ENSMUSG00000037287.15, exon 8 of 8) -14387 ENSMUSG00000037705.13 ENSMUSG00000037705 ENSMUST00000160940 Tecta protein_coding Interval_23626 chr11 23942682 23942912 + 0 NA Intergenic Intergenic -13943 ENSMUSG00000084206.1 ENSMUSG00000084206 ENSMUST00000117533 Gm12062 processed_pseudogene Interval_119385 chr4 137379546 137381644 + 0 NA Intergenic Intergenic 7787 ENSMUSG00000101493.1 ENSMUSG00000101493 ENSMUST00000189334 2810405F17Rik lincRNA Interval_50118 chr14 8097911 8098834 + 0 NA exon (ENSMUSG00000033885.15, exon 1 of 18) protein_coding-exon (ENSMUSG00000033885.15, exon 1 of 18) 149 ENSMUSG00000033885.15 ENSMUSG00000033885 ENSMUST00000224462 Pxk protein_coding Interval_53418 chr14 57176074 57176302 + 0 NA Intergenic Intergenic 2972 ENSMUSG00000114530.1 ENSMUSG00000114530 ENSMUST00000225618 Gm48725 processed_pseudogene Interval_114841 chr4 86177901 86178272 + 0 NA intron (ENSMUSG00000066113.16, intron 4 of 8) protein_coding-intron (ENSMUSG00000066113.16, intron 4 of 12) -134592 ENSMUSG00000064687.1 ENSMUSG00000064687 ENSMUST00000082753 Gm25811 snRNA Interval_145091 chr7 29978645 29978948 + 0 NA Intergenic Intergenic -6460 ENSMUSG00000074221.12 ENSMUSG00000074221 ENSMUST00000177931 Zfp568 protein_coding Interval_143792 chr7 16332076 16332451 + 0 NA intron (ENSMUSG00000052833.9, intron 7 of 8) protein_coding-intron (ENSMUSG00000052833.9, intron 7 of 8) 23870 ENSMUSG00000002083.13 ENSMUSG00000002083 ENSMUST00000147267 Bbc3 protein_coding Interval_44853 chr13 49117375 49118168 + 0 NA intron (ENSMUSG00000037989.15, intron 2 of 27) protein_coding-intron (ENSMUSG00000037989.15, intron 2 of 27) 30241 ENSMUSG00000037989.15 ENSMUSG00000037989 ENSMUST00000159633 Wnk2 protein_coding Interval_88286 chr2 3357894 3358103 + 0 NA intron (ENSMUSG00000026645.11, intron 4 of 8) protein_coding-intron (ENSMUSG00000026645.11, intron 3 of 7) -3994 ENSMUSG00000103786.1 ENSMUSG00000103786 ENSMUST00000193499 Gm37525 sense_intronic Interval_58947 chr15 40537542 40538531 + 0 NA exon (ENSMUSG00000115069.1, exon 1 of 1) processed_pseudogene-exon (ENSMUSG00000115069.1, exon 1 of 1) 715 ENSMUSG00000115069.1 ENSMUSG00000115069 ENSMUST00000226476 Gm7382 processed_pseudogene Interval_44711 chr13 47431655 47431885 + 0 NA intron (ENSMUSG00000114843.1, intron 2 of 2) lincRNA-intron (ENSMUSG00000114843.1, intron 2 of 2) 70384 ENSMUSG00000114843.1 ENSMUSG00000114843 ENSMUST00000224000 Gm35733 lincRNA Interval_73818 chr17 44105211 44106365 + 0 NA promoter-TSS (ENSMUSG00000023961.16) protein_coding-promoter-TSS (ENSMUSG00000023961.16) -24 ENSMUSG00000023961.16 ENSMUSG00000023961 ENSMUST00000143137 Enpp4 protein_coding Interval_51746 chr14 31899566 31901214 + 0 NA Intergenic Intergenic -6138 ENSMUSG00000046005.4 ENSMUSG00000046005 ENSMUST00000143315 D830044D21Rik lincRNA Interval_31187 chr11 98776934 98777197 + 0 NA Intergenic Intergenic -6639 ENSMUSG00000020889.11 ENSMUSG00000020889 ENSMUST00000139220 Nr1d1 protein_coding Interval_59634 chr15 56842780 56843347 + 0 NA Intergenic Intergenic -59635 ENSMUSG00000115493.1 ENSMUSG00000115493 ENSMUST00000228866 Gm5673 processed_pseudogene Interval_168897 chr9 88456021 88458321 + 0 NA promoter-TSS (ENSMUSG00000092541.7) protein_coding-promoter-TSS (ENSMUSG00000092541.7) -555 ENSMUSG00000092541.7 ENSMUSG00000092541 ENSMUST00000154586 Gm20537 protein_coding Interval_19000 chr10 93678641 93679917 + 0 NA exon (ENSMUSG00000085723.2, exon 4 of 6) antisense-exon (ENSMUSG00000085723.2, exon 4 of 6) 4043 ENSMUSG00000085723.2 ENSMUSG00000085723 ENSMUST00000147379 Gm15915 antisense Interval_17678 chr10 79097151 79097848 + 0 NA promoter-TSS (ENSMUSG00000060301.6) protein_coding-promoter-TSS (ENSMUSG00000060301.6) 26 ENSMUSG00000060301.6 ENSMUSG00000060301 ENSMUST00000219729 2610008E11Rik protein_coding Interval_110420 chr3 157934158 157934807 + 0 NA intron (ENSMUSG00000028177.13, intron 2 of 2) antisense-intron (ENSMUSG00000028177.13, intron 3 of 4) 9262 ENSMUSG00000028177.13 ENSMUSG00000028177 ENSMUST00000196971 1810013D15Rik antisense Interval_97440 chr2 136374969 136375766 + 0 NA intron (ENSMUSG00000039913.12, intron 1 of 10) protein_coding-intron (ENSMUSG00000039913.12, intron 1 of 10) 12600 ENSMUSG00000039913.12 ENSMUSG00000039913 ENSMUST00000143329 Pak7 protein_coding Interval_51938 chr14 34104822 34105372 + 0 NA Intergenic Intergenic -1059 ENSMUSG00000088533.1 ENSMUSG00000088533 ENSMUST00000157908 Gm24998 snoRNA Interval_76621 chr17 82828576 82828874 + 0 NA Intergenic Intergenic -127271 ENSMUSG00000117472.1 ENSMUSG00000117472 ENSMUST00000234284 Gm4601 processed_pseudogene Interval_136823 chr6 61001330 61002135 + 0 NA Intergenic Intergenic 16004 ENSMUSG00000108098.1 ENSMUSG00000108098 ENSMUST00000204855 Gm18838 processed_pseudogene Interval_66838 chr16 37994593 37995325 + 0 NA intron (ENSMUSG00000046961.8, intron 8 of 9) protein_coding-intron (ENSMUSG00000046961.8, intron 8 of 9) 14872 ENSMUSG00000065188.1 ENSMUSG00000065188 ENSMUST00000083254 Gm25140 snRNA Interval_156473 chr8 48509358 48509676 + 0 NA intron (ENSMUSG00000031561.16, intron 2 of 26) protein_coding-intron (ENSMUSG00000031561.16, intron 2 of 28) 45796 ENSMUSG00000031561.16 ENSMUSG00000031561 ENSMUST00000211812 Tenm3 protein_coding Interval_73085 chr17 34702358 34702593 + 0 NA intron (ENSMUSG00000033327.18, intron 22 of 43) protein_coding-intron (ENSMUSG00000033327.18, intron 19 of 40) -14673 ENSMUSG00000095142.1 ENSMUSG00000095142 ENSMUST00000179962 Gm24389 snRNA Interval_80735 chr18 46675306 46676231 + 0 NA Intergenic Intergenic 44961 ENSMUSG00000117780.1 ENSMUSG00000117780 ENSMUST00000236340 Gm3734 lincRNA Interval_29096 chr11 80295384 80295683 + 0 NA Intergenic Intergenic 40832 ENSMUSG00000017686.17 ENSMUSG00000017686 ENSMUST00000236882 Rhot1 protein_coding Interval_128480 chr5 113577422 113578062 + 0 NA intron (ENSMUSG00000063430.9, intron 4 of 4) protein_coding-intron (ENSMUSG00000063430.9, intron 8 of 8) -1046 ENSMUSG00000063430.9 ENSMUSG00000063430 ENSMUST00000198673 Wscd2 protein_coding Interval_75338 chr17 65950526 65951542 + 0 NA promoter-TSS (ENSMUSG00000024098.6) protein_coding-promoter-TSS (ENSMUSG00000024098.6) 103 ENSMUSG00000024098.6 ENSMUSG00000024098 ENSMUST00000233855 Twsg1 protein_coding Interval_24686 chr11 35915153 35915755 + 0 NA intron (ENSMUSG00000018849.6, intron 1 of 22) protein_coding-intron (ENSMUSG00000018849.6, intron 1 of 22) -61900 ENSMUSG00000018849.6 ENSMUSG00000018849 ENSMUST00000127086 Wwc1 protein_coding Interval_108064 chr3 121306430 121306701 + 0 NA intron (ENSMUSG00000039887.11, intron 2 of 2) protein_coding-intron (ENSMUSG00000039887.11, intron 2 of 3) 14738 ENSMUSG00000039887.11 ENSMUSG00000039887 ENSMUST00000198341 Alg14 protein_coding Interval_51756 chr14 32011628 32012437 + 0 NA TTS (ENSMUSG00000115120.1) lincRNA-TTS (ENSMUSG00000115120.1) 970 ENSMUSG00000115120.1 ENSMUSG00000115120 ENSMUST00000226278 4930425P05Rik lincRNA Interval_48127 chr13 96440775 96441225 + 0 NA intron (ENSMUSG00000047117.13, intron 1 of 6) protein_coding-intron (ENSMUSG00000047117.13, intron 8 of 14) 30160 ENSMUSG00000047117.13 ENSMUSG00000047117 ENSMUST00000181613 Ankdd1b protein_coding Interval_22494 chr11 11097493 11099675 + 0 NA Intergenic Intergenic -17901 ENSMUSG00000050830.17 ENSMUSG00000050830 ENSMUST00000154155 Vwc2 protein_coding Interval_44087 chr13 40788412 40788640 + 0 NA Intergenic Intergenic 10486 ENSMUSG00000090475.1 ENSMUSG00000090475 ENSMUST00000164699 Gm6245 processed_pseudogene Interval_96157 chr2 120138897 120139389 + 0 NA intron (ENSMUSG00000027293.13, intron 1 of 3) protein_coding-intron (ENSMUSG00000027293.13, intron 1 of 5) -1583 ENSMUSG00000027293.13 ENSMUSG00000027293 ENSMUST00000148073 Ehd4 protein_coding Interval_2876 chr1 47119780 47120239 + 0 NA Intergenic Intergenic -33452 ENSMUSG00000101447.1 ENSMUSG00000101447 ENSMUST00000190006 Gm28826 lincRNA Interval_158257 chr8 80630777 80631479 + 0 NA intron (ENSMUSG00000042353.9, intron 2 of 7) protein_coding-intron (ENSMUSG00000042353.9, intron 2 of 7) 20048 ENSMUSG00000042353.9 ENSMUSG00000042353 ENSMUST00000039695 Frem3 protein_coding Interval_16573 chr10 64089948 64090734 + 0 NA promoter-TSS (ENSMUSG00000042846.8) protein_coding-promoter-TSS (ENSMUSG00000042846.8) -94 ENSMUSG00000042846.8 ENSMUSG00000042846 ENSMUST00000133588 Lrrtm3 protein_coding Interval_163932 chr9 29173805 29174416 + 0 NA intron (ENSMUSG00000059974.10, intron 2 of 5) protein_coding-intron (ENSMUSG00000059974.10, intron 3 of 7) 114311 ENSMUSG00000085449.1 ENSMUSG00000085449 ENSMUST00000132097 Gm15520 antisense Interval_4313 chr1 72640575 72642117 + 0 NA exon (ENSMUSG00000110712.1, exon 1 of 3) antisense-exon (ENSMUSG00000110712.1, exon 1 of 3) 158 ENSMUSG00000110712.1 ENSMUSG00000110712 ENSMUST00000211909 Gm39662 antisense Interval_131986 chr5 141854434 141855674 + 0 NA intron (ENSMUSG00000039683.16, intron 5 of 9) protein_coding-intron (ENSMUSG00000039683.16, intron 5 of 44) -239052 ENSMUSG00000085540.1 ENSMUSG00000085540 ENSMUST00000150385 Gm16036 antisense Interval_155159 chr8 27128039 27129138 + 0 NA promoter-TSS (ENSMUSG00000031487.5) protein_coding-promoter-TSS (ENSMUSG00000031487.5) -3077 ENSMUSG00000031487.5 ENSMUSG00000031487 ENSMUST00000209770 Brf2 protein_coding Interval_90649 chr2 31678299 31678867 + 0 NA TTS (ENSMUSG00000039356.15) protein_coding-TTS (ENSMUSG00000039356.15) 299 ENSMUSG00000039356.15 ENSMUSG00000039356 ENSMUST00000192043 Exosc2 protein_coding Interval_90597 chr2 31365600 31366175 + 0 NA intron (ENSMUSG00000055632.18, intron 19 of 97) protein_coding-intron (ENSMUSG00000055632.18, intron 19 of 97) 51472 ENSMUSG00000055632.18 ENSMUSG00000055632 ENSMUST00000141294 Hmcn2 protein_coding Interval_74410 chr17 50006393 50007377 + 0 NA intron (ENSMUSG00000039316.14, intron 5 of 7) protein_coding-intron (ENSMUSG00000039316.14, intron 7 of 9) 34058 ENSMUSG00000118535.1 ENSMUSG00000118535 ENSMUST00000239097 AC133946.1 unitary_pseudogene Interval_63841 chr16 3928839 3930251 + 0 NA promoter-TSS (ENSMUSG00000085048.1) antisense-promoter-TSS (ENSMUSG00000085048.1) -188 ENSMUSG00000085048.1 ENSMUSG00000085048 ENSMUST00000126677 Gm15537 antisense Interval_165415 chr9 47619086 47619791 + 0 NA intron (ENSMUSG00000032076.20, intron 1 of 8) protein_coding-intron (ENSMUSG00000032076.20, intron 1 of 8) 89086 ENSMUSG00000032076.20 ENSMUSG00000032076 ENSMUST00000034581 Cadm1 protein_coding Interval_71949 chr17 27165161 27165506 + 0 NA intron (ENSMUSG00000024210.3, intron 1 of 5) protein_coding-intron (ENSMUSG00000024210.3, intron 1 of 5) 2462 ENSMUSG00000024210.3 ENSMUSG00000024210 ENSMUST00000025046 Ip6k3 protein_coding Interval_15818 chr10 57552400 57552852 + 0 NA Intergenic Intergenic -20216 ENSMUSG00000019877.10 ENSMUSG00000019877 ENSMUST00000164400 Serinc1 protein_coding Interval_68451 chr16 77013054 77014631 + 0 NA promoter-TSS (ENSMUSG00000022867.11) protein_coding-promoter-TSS (ENSMUSG00000022867.11) 136 ENSMUSG00000022867.11 ENSMUSG00000022867 ENSMUST00000232351 Usp25 protein_coding Interval_8248 chr1 136719457 136720016 + 0 NA intron (ENSMUSG00000097448.1, intron 2 of 4) lincRNA-intron (ENSMUSG00000097448.1, intron 2 of 4) 22362 ENSMUSG00000092912.1 ENSMUSG00000092912 ENSMUST00000175171 Gm24086 snRNA Interval_161173 chr8 118142309 118143574 + 0 NA Intergenic Intergenic 21987 ENSMUSG00000065028.1 ENSMUSG00000065028 ENSMUST00000083094 Gm25200 snoRNA Interval_36794 chr12 54099182 54099792 + 0 NA intron (ENSMUSG00000112549.1, intron 3 of 4) lincRNA-intron (ENSMUSG00000112549.1, intron 3 of 4) 7398 ENSMUSG00000112549.1 ENSMUSG00000112549 ENSMUST00000219480 Gm35818 lincRNA Interval_29738 chr11 86484081 86485148 + 0 NA promoter-TSS (ENSMUSG00000020521.7) protein_coding-promoter-TSS (ENSMUSG00000020521.7) -116 ENSMUSG00000020521.7 ENSMUSG00000020521 ENSMUST00000131246 Rnft1 protein_coding Interval_57449 chr15 11029708 11029932 + 0 NA TTS (ENSMUSG00000022243.10) protein_coding-TTS (ENSMUSG00000022243.10) 8171 ENSMUSG00000060735.4 ENSMUSG00000060735 ENSMUST00000058007 Rxfp3 protein_coding Interval_14075 chr10 26570540 26570739 + 0 NA Intergenic Intergenic -40108 ENSMUSG00000111882.2 ENSMUSG00000111882 ENSMUST00000218590 Gm48864 unitary_pseudogene Interval_2174 chr1 36855734 36857687 + 0 NA intron (ENSMUSG00000026116.11, intron 5 of 41) protein_coding-intron (ENSMUSG00000026116.11, intron 4 of 40) 15335 ENSMUSG00000103016.1 ENSMUSG00000103016 ENSMUST00000192008 Gm37506 TEC Interval_70694 chr17 13566594 13567507 + 0 NA intron (ENSMUSG00000117063.1, intron 1 of 4) lincRNA-intron (ENSMUSG00000117063.1, intron 1 of 4) -32881 ENSMUSG00000095184.1 ENSMUSG00000095184 ENSMUST00000101829 Gm26375 snRNA Interval_24772 chr11 37235871 37237243 + 0 NA promoter-TSS (ENSMUSG00000049336.16) protein_coding-promoter-TSS (ENSMUSG00000049336.16) -292391 ENSMUSG00000049336.16 ENSMUSG00000049336 ENSMUST00000157030 Tenm2 protein_coding Interval_159 JH584304.1 23578 29532 + 0 NA NA NA NA NA Interval_94896 chr2 101363102 101363393 + 0 NA Intergenic Intergenic -207377 ENSMUSG00000093614.1 ENSMUSG00000093614 ENSMUST00000177431 Gm20693 processed_pseudogene Interval_140241 chr6 115743271 115744053 + 0 NA intron (ENSMUSG00000059900.14, intron 1 of 10) protein_coding-intron (ENSMUSG00000059900.14, intron 1 of 11) 6953 ENSMUSG00000098477.1 ENSMUSG00000098477 ENSMUST00000184176 Gm27853 misc_RNA Interval_42994 chr13 22706571 22707548 + 0 NA intron (ENSMUSG00000085221.2, intron 2 of 2) antisense-intron (ENSMUSG00000085221.2, intron 2 of 2) -15093 ENSMUSG00000083673.3 ENSMUSG00000083673 ENSMUST00000121014 Vmn1r-ps111 unprocessed_pseudogene Interval_109815 chr3 148023801 148024415 + 0 NA Intergenic Intergenic -106136 ENSMUSG00000106285.1 ENSMUSG00000106285 ENSMUST00000196226 Gm43574 processed_transcript Interval_41460 chr12 114405832 114406834 + 0 NA TTS (ENSMUSG00000094174.2) IG_V_gene-TTS (ENSMUSG00000094174.2) 628 ENSMUSG00000094174.2 ENSMUSG00000094174 ENSMUST00000177949 Ighv6-4 IG_V_gene Interval_49247 chr13 109802248 109802476 + 0 NA intron (ENSMUSG00000021699.17, intron 6 of 15) protein_coding-intron (ENSMUSG00000021699.17, intron 5 of 14) -101447 ENSMUSG00000084651.1 ENSMUSG00000084651 ENSMUST00000122702 Mir1904 miRNA Interval_59714 chr15 58822666 58824122 + 0 NA exon (ENSMUSG00000062373.8, exon 1 of 7) protein_coding-exon (ENSMUSG00000062373.8, exon 1 of 7) 244 ENSMUSG00000062373.8 ENSMUSG00000062373 ENSMUST00000226578 Tmem65 protein_coding Interval_2996 chr1 51987090 51987318 + 0 NA promoter-TSS (ENSMUSG00000062939.11) protein_coding-promoter-TSS (ENSMUSG00000062939.11) -45943 ENSMUSG00000072324.4 ENSMUSG00000072324 ENSMUST00000097103 Gm8420 processed_pseudogene Interval_167267 chr9 66896808 66897860 + 0 NA intron (ENSMUSG00000036943.9, intron 1 of 7) protein_coding-intron (ENSMUSG00000036943.9, intron 1 of 7) 22353 ENSMUSG00000036943.9 ENSMUSG00000036943 ENSMUST00000041139 Rab8b protein_coding Interval_91857 chr2 50449427 50449736 + 0 NA Intergenic Intergenic 40249 ENSMUSG00000082483.1 ENSMUSG00000082483 ENSMUST00000119910 Gm13486 processed_pseudogene Interval_61134 chr15 79447131 79448751 + 0 NA intron (ENSMUSG00000022433.20, intron 1 of 4) protein_coding-intron (ENSMUSG00000022433.20, intron 1 of 4) -5805 ENSMUSG00000022433.20 ENSMUSG00000022433 ENSMUST00000156043 Csnk1e protein_coding Interval_62100 chr15 86626532 86626722 + 0 NA Intergenic Intergenic -77664 ENSMUSG00000116040.1 ENSMUSG00000116040 ENSMUST00000229409 Gm49464 lincRNA Interval_6272 chr1 105094441 105095707 + 0 NA Intergenic Intergenic -21380 ENSMUSG00000099669.1 ENSMUSG00000099669 ENSMUST00000187882 Gm29012 lincRNA Interval_35965 chr12 32909856 32911129 + 0 NA Intergenic Intergenic 19455 ENSMUSG00000112124.1 ENSMUSG00000112124 ENSMUST00000218220 Gm19056 processed_pseudogene Interval_23917 chr11 28288755 28289061 + 0 NA Intergenic Intergenic 50906 ENSMUSG00000032889.7 ENSMUSG00000032889 ENSMUST00000042595 Gm6685 processed_pseudogene Interval_70140 chr17 5745816 5746578 + 0 NA intron (ENSMUSG00000034265.8, intron 8 of 8) protein_coding-intron (ENSMUSG00000034265.8, intron 8 of 8) -53294 ENSMUSG00000096965.7 ENSMUSG00000096965 ENSMUST00000181392 3300005D01Rik lincRNA Interval_3614 chr1 60007024 60008786 + 0 NA exon (ENSMUSG00000026018.12, exon 7 of 11) protein_coding-exon (ENSMUSG00000026018.12, exon 7 of 11) 28724 ENSMUSG00000041040.12 ENSMUSG00000041040 ENSMUST00000189790 Fam117b protein_coding Interval_127163 chr5 100753199 100753695 + 0 NA Intergenic Intergenic -33742 ENSMUSG00000035273.14 ENSMUSG00000035273 ENSMUST00000112908 Hpse protein_coding Interval_137339 chr6 71478793 71479942 + 0 NA Intergenic Intergenic -13305 ENSMUSG00000107460.1 ENSMUSG00000107460 ENSMUST00000204118 Gm44186 TEC Interval_147029 chr7 58768048 58768241 + 0 NA intron (ENSMUSG00000025324.8, intron 2 of 20) protein_coding-intron (ENSMUSG00000025324.8, intron 2 of 20) 47945 ENSMUSG00000109434.1 ENSMUSG00000109434 ENSMUST00000207705 Gm44937 TEC Interval_159041 chr8 89015316 89016745 + 0 NA Intergenic Intergenic -8705 ENSMUSG00000099078.1 ENSMUSG00000099078 ENSMUST00000183771 Mir8110 miRNA Interval_166399 chr9 58980177 58980400 + 0 NA intron (ENSMUSG00000111846.1, intron 2 of 3) protein_coding-intron (ENSMUSG00000032340.8, intron 4 of 28) 1037 ENSMUSG00000111846.1 ENSMUSG00000111846 ENSMUST00000216941 Gm47271 antisense Interval_24190 chr11 31133388 31134209 + 0 NA Intergenic Intergenic 13795 ENSMUSG00000082049.1 ENSMUSG00000082049 ENSMUST00000120846 Gm12105 processed_pseudogene Interval_134825 chr6 31896565 31897531 + 0 NA intron (ENSMUSG00000087379.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000087379.1, intron 1 of 2) 110373 ENSMUSG00000087379.1 ENSMUSG00000087379 ENSMUST00000153328 Gm13849 lincRNA Interval_69709 chr16 95716128 95716566 + 0 NA TTS (ENSMUSG00000022895.16) protein_coding-TTS (ENSMUSG00000022895.16) 13892 ENSMUSG00000022895.16 ENSMUSG00000022895 ENSMUST00000233578 Ets2 protein_coding Interval_47828 chr13 93588449 93588646 + 0 NA Intergenic Intergenic -36835 ENSMUSG00000085834.1 ENSMUSG00000085834 ENSMUST00000143025 Gm15622 antisense Interval_116894 chr4 118047753 118048435 + 0 NA intron (ENSMUSG00000028538.12, intron 2 of 10) protein_coding-intron (ENSMUSG00000028538.12, intron 3 of 11) -16212 ENSMUSG00000028538.12 ENSMUSG00000028538 ENSMUST00000126336 St3gal3 protein_coding Interval_58858 chr15 39232760 39233058 + 0 NA intron (ENSMUSG00000037386.16, intron 1 of 25) protein_coding-intron (ENSMUSG00000037386.16, intron 1 of 26) 52398 ENSMUSG00000098021.2 ENSMUSG00000098021 ENSMUST00000182394 Gm9522 processed_pseudogene Interval_160350 chr8 108691761 108692173 + 0 NA intron (ENSMUSG00000038872.10, intron 6 of 15) protein_coding-intron (ENSMUSG00000038872.10, intron 6 of 15) -45626 ENSMUSG00000104292.1 ENSMUSG00000104292 ENSMUST00000191614 Gm38042 TEC Interval_136195 chr6 51945664 51945831 + 0 NA intron (ENSMUSG00000059182.7, intron 4 of 12) protein_coding-intron (ENSMUSG00000059182.7, intron 4 of 12) -66854 ENSMUSG00000108244.1 ENSMUSG00000108244 ENSMUST00000203453 Gm44077 lincRNA Interval_173947 chrX 114904846 114905015 + 0 NA promoter-TSS (ENSMUSG00000050435.2) protein_coding-promoter-TSS (ENSMUSG00000050435.2) -82 ENSMUSG00000050435.2 ENSMUSG00000050435 ENSMUST00000059509 Ube2dnl1 protein_coding Interval_24928 chr11 41543732 41543922 + 0 NA Intergenic Intergenic 45090 ENSMUSG00000058809.8 ENSMUSG00000058809 ENSMUST00000119713 Hspd1-ps3 processed_pseudogene Interval_135508 chr6 39763780 39764134 + 0 NA Intergenic Intergenic 42085 ENSMUSG00000029918.9 ENSMUSG00000029918 ENSMUST00000139992 Mrps33 protein_coding Interval_170767 chr9 110631055 110632975 + 0 NA promoter-TSS (ENSMUSG00000056724.15) protein_coding-promoter-TSS (ENSMUSG00000056724.15) 4100 ENSMUSG00000099275.1 ENSMUSG00000099275 ENSMUST00000184024 Mir8107 miRNA Interval_29797 chr11 86878354 86880228 + 0 NA Intergenic Intergenic -78203 ENSMUSG00000018425.18 ENSMUSG00000018425 ENSMUST00000131798 Dhx40 protein_coding Interval_68596 chr16 80339278 80339653 + 0 NA Intergenic Intergenic 202113 ENSMUSG00000088476.1 ENSMUSG00000088476 ENSMUST00000157851 Gm23083 snoRNA Interval_39385 chr12 87044505 87045100 + 0 NA intron (ENSMUSG00000034145.14, intron 1 of 23) protein_coding-intron (ENSMUSG00000034145.14, intron 2 of 24) 10036 ENSMUSG00000080443.1 ENSMUSG00000080443 ENSMUST00000116793 Gm25847 miRNA Interval_126067 chr5 77193453 77194534 + 0 NA Intergenic Intergenic 17212 ENSMUSG00000053030.11 ENSMUSG00000053030 ENSMUST00000121825 Spink2 protein_coding Interval_103618 chr3 51220915 51221171 + 0 NA Intergenic Intergenic -10874 ENSMUSG00000103313.1 ENSMUSG00000103313 ENSMUST00000195382 Gm38357 TEC Interval_98771 chr2 154855362 154855638 + 0 NA intron (ENSMUSG00000027593.15, intron 2 of 2) protein_coding-intron (ENSMUSG00000027593.15, intron 2 of 9) 37282 ENSMUSG00000074656.12 ENSMUSG00000074656 ENSMUST00000135524 Eif2s2 protein_coding Interval_67264 chr16 45063611 45064400 + 0 NA Intergenic Intergenic -29585 ENSMUSG00000022665.15 ENSMUSG00000022665 ENSMUST00000061050 Ccdc80 protein_coding Interval_875 chr1 12864028 12865741 + 0 NA Intergenic Intergenic 126293 ENSMUSG00000025938.16 ENSMUSG00000025938 ENSMUST00000191566 Slco5a1 protein_coding Interval_155330 chr8 31396877 31398052 + 0 NA promoter-TSS (ENSMUSG00000118533.1) processed_pseudogene-promoter-TSS (ENSMUSG00000118533.1) -567 ENSMUSG00000118533.1 ENSMUSG00000118533 ENSMUST00000238992 AC132410.1 processed_pseudogene Interval_167324 chr9 67390223 67390626 + 0 NA intron (ENSMUSG00000052698.15, intron 7 of 58) protein_coding-intron (ENSMUSG00000052698.15, intron 6 of 57) -34079 ENSMUSG00000111412.1 ENSMUSG00000111412 ENSMUST00000216972 Gm47047 antisense Interval_128805 chr5 115371181 115372153 + 0 NA intron (ENSMUSG00000087292.1, intron 2 of 2) lincRNA-intron (ENSMUSG00000087292.1, intron 2 of 2) -11544 ENSMUSG00000086352.1 ENSMUSG00000086352 ENSMUST00000139500 4930401G09Rik lincRNA Interval_171620 chr9 119588554 119589650 + 0 NA Intergenic Intergenic -25599 ENSMUSG00000032511.17 ENSMUSG00000032511 ENSMUST00000138934 Scn5a protein_coding Interval_134582 chr6 29743828 29744351 + 0 NA intron (ENSMUSG00000001761.7, intron 1 of 11) protein_coding-intron (ENSMUSG00000001761.7, intron 1 of 11) -6672 ENSMUSG00000081564.1 ENSMUSG00000081564 ENSMUST00000119868 Gm13717 processed_pseudogene Interval_25375 chr11 46864492 46865831 + 0 NA Intergenic Intergenic -9252 ENSMUSG00000082818.1 ENSMUSG00000082818 ENSMUST00000122081 Gm12175 processed_pseudogene Interval_121703 chr5 5493882 5494941 + 0 NA intron (ENSMUSG00000046798.14, intron 3 of 3) protein_coding-intron (ENSMUSG00000046798.14, intron 3 of 3) -15331 ENSMUSG00000079666.8 ENSMUSG00000079666 ENSMUST00000156282 1700015F17Rik protein_coding Interval_159519 chr8 95205524 95205990 + 0 NA Intergenic Intergenic 67447 ENSMUSG00000110475.1 ENSMUSG00000110475 ENSMUST00000212925 Gm31036 antisense Interval_58405 chr15 34221769 34222166 + 0 NA Intergenic Intergenic 47862 ENSMUSG00000115808.1 ENSMUSG00000115808 ENSMUST00000226939 Gm18949 processed_pseudogene Interval_70372 chr17 9193984 9194366 + 0 NA intron (ENSMUSG00000117026.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000117026.1, intron 1 of 2) 5028 ENSMUSG00000117026.1 ENSMUSG00000117026 ENSMUST00000233515 C87487 lincRNA Interval_2319 chr1 38022550 38022769 + 0 NA intron (ENSMUSG00000026083.12, intron 6 of 21) protein_coding-intron (ENSMUSG00000026083.12, intron 6 of 23) -21975 ENSMUSG00000026083.12 ENSMUSG00000026083 ENSMUST00000195664 Eif5b protein_coding Interval_129990 chr5 123572386 123573541 + 0 NA promoter-TSS (ENSMUSG00000029434.12) protein_coding-promoter-TSS (ENSMUSG00000029434.12) -10976 ENSMUSG00000104704.1 ENSMUSG00000104704 ENSMUST00000197472 Gm43133 TEC Interval_22928 chr11 17518046 17518762 + 0 NA Intergenic Intergenic -29882 ENSMUSG00000087833.1 ENSMUSG00000087833 ENSMUST00000157208 Gm23959 misc_RNA Interval_107597 chr3 108798539 108799192 + 0 NA intron (ENSMUSG00000027882.18, intron 4 of 5) protein_coding-intron (ENSMUSG00000027882.18, intron 16 of 18) 41650 ENSMUSG00000027882.18 ENSMUSG00000027882 ENSMUST00000106596 Stxbp3 protein_coding Interval_28085 chr11 72725783 72726802 + 0 NA intron (ENSMUSG00000020790.14, intron 4 of 24) protein_coding-intron (ENSMUSG00000020790.14, intron 2 of 22) 36286 ENSMUSG00000020790.14 ENSMUSG00000020790 ENSMUST00000132889 Ankfy1 protein_coding Interval_43096 chr13 23977321 23977522 + 0 NA intron (ENSMUSG00000021337.8, intron 4 of 10) protein_coding-intron (ENSMUSG00000021337.8, intron 4 of 10) 20612 ENSMUSG00000087603.1 ENSMUSG00000087603 ENSMUST00000154766 Gm11339 antisense Interval_2276 chr1 37634739 37635104 + 0 NA intron (ENSMUSG00000026090.16, intron 3 of 9) protein_coding-intron (ENSMUSG00000026090.16, intron 3 of 9) 20662 ENSMUSG00000089767.1 ENSMUSG00000089767 ENSMUST00000160659 4930556I23Rik antisense Interval_168825 chr9 87680268 87680943 + 0 NA Intergenic Intergenic -48680 ENSMUSG00000103710.1 ENSMUSG00000103710 ENSMUST00000192660 D030062O11Rik TEC Interval_154606 chr8 22022124 22022488 + 0 NA exon (ENSMUSG00000006567.11, exon 3 of 21) protein_coding-exon (ENSMUSG00000006567.11, exon 3 of 21) 37713 ENSMUSG00000006567.11 ENSMUSG00000006567 ENSMUST00000110738 Atp7b protein_coding Interval_117504 chr4 124228412 124229140 + 0 NA Intergenic Intergenic 50401 ENSMUSG00000103541.1 ENSMUSG00000103541 ENSMUST00000193103 Gm37667 TEC Interval_143861 chr7 16804412 16804969 + 0 NA Intergenic Intergenic 10831 ENSMUSG00000048920.8 ENSMUSG00000048920 ENSMUST00000205368 Fkrp protein_coding Interval_39236 chr12 86110773 86111371 + 0 NA intron (ENSMUSG00000007867.9, intron 1 of 5) protein_coding-intron (ENSMUSG00000007867.9, intron 2 of 7) 28464 ENSMUSG00000007867.9 ENSMUSG00000007867 ENSMUST00000220711 Ift43 protein_coding Interval_156579 chr8 52900412 52900717 + 0 NA Intergenic Intergenic -105844 ENSMUSG00000088678.1 ENSMUSG00000088678 ENSMUST00000158053 Gm23666 snoRNA Interval_147513 chr7 67877785 67878751 + 0 NA Intergenic Intergenic 8317 ENSMUSG00000109152.1 ENSMUSG00000109152 ENSMUST00000208544 Gm44666 processed_pseudogene Interval_168592 chr9 83970940 83971386 + 0 NA intron (ENSMUSG00000032263.14, intron 3 of 10) protein_coding-intron (ENSMUSG00000032263.14, intron 3 of 10) -4156 ENSMUSG00000101077.1 ENSMUSG00000101077 ENSMUST00000185454 Gm29164 processed_pseudogene Interval_166860 chr9 63331277 63331484 + 0 NA intron (ENSMUSG00000058444.8, intron 6 of 21) protein_coding-intron (ENSMUSG00000058444.8, intron 6 of 21) 46497 ENSMUSG00000058444.8 ENSMUSG00000058444 ENSMUST00000216999 Map2k5 protein_coding Interval_92284 chr2 58199796 58200040 + 0 NA Intergenic Intergenic -4386 ENSMUSG00000026832.12 ENSMUSG00000026832 ENSMUST00000151169 Cytip protein_coding Interval_47116 chr13 75907802 75908349 + 0 NA intron (ENSMUSG00000021589.13, intron 2 of 5) protein_coding-intron (ENSMUSG00000021589.13, intron 6 of 11) 2928 ENSMUSG00000070170.1 ENSMUSG00000070170 ENSMUST00000093660 Gm24163 snoRNA Interval_108979 chr3 133834489 133834968 + 0 NA intron (ENSMUSG00000097911.2, intron 1 of 2) antisense-intron (ENSMUSG00000097911.2, intron 1 of 2) -16210 ENSMUSG00000104645.1 ENSMUSG00000104645 ENSMUST00000200327 Gm30484 lincRNA Interval_6001 chr1 93832622 93833330 + 0 NA intron (ENSMUSG00000073609.9, intron 5 of 9) protein_coding-intron (ENSMUSG00000073609.9, intron 5 of 9) 6691 ENSMUSG00000073609.9 ENSMUSG00000073609 ENSMUST00000188532 D2hgdh protein_coding Interval_156126 chr8 44985048 44986300 + 0 NA intron (ENSMUSG00000070047.14, intron 1 of 28) protein_coding-intron (ENSMUSG00000070047.14, intron 1 of 25) 35460 ENSMUSG00000070047.14 ENSMUSG00000070047 ENSMUST00000189367 Fat1 protein_coding Interval_87769 chr19 55741210 55744319 + 0 NA promoter-TSS (ENSMUSG00000024985.20) protein_coding-promoter-TSS (ENSMUSG00000024985.20) 500 ENSMUSG00000024985.20 ENSMUSG00000024985 ENSMUST00000148666 Tcf7l2 protein_coding Interval_166689 chr9 61947938 61948460 + 0 NA Intergenic Intergenic -23078 ENSMUSG00000032254.10 ENSMUSG00000032254 ENSMUST00000215404 Kif23 protein_coding Interval_158100 chr8 78721784 78723124 + 0 NA intron (ENSMUSG00000031684.11, intron 10 of 12) protein_coding-intron (ENSMUSG00000031684.11, intron 10 of 11) 52091 ENSMUSG00000112190.1 ENSMUSG00000112190 ENSMUST00000218647 Gm47209 unitary_pseudogene Interval_22542 chr11 11643773 11644737 + 0 NA intron (ENSMUSG00000085652.1, intron 3 of 3) processed_transcript-intron (ENSMUSG00000085652.1, intron 3 of 3) -16420 ENSMUSG00000062511.6 ENSMUSG00000062511 ENSMUST00000149910 4930512M02Rik protein_coding Interval_106900 chr3 101714380 101715524 + 0 NA Intergenic Intergenic 23163 ENSMUSG00000106070.1 ENSMUSG00000106070 ENSMUST00000196442 Gm43135 lincRNA Interval_24887 chr11 40747596 40748828 + 0 NA TTS (ENSMUSG00000020326.7) protein_coding-TTS (ENSMUSG00000020326.7) 5726 ENSMUSG00000020326.7 ENSMUSG00000020326 ENSMUST00000151359 Ccng1 protein_coding Interval_11364 chr1 181241324 181242480 + 0 NA TTS (ENSMUSG00000081214.3) processed_pseudogene-TTS (ENSMUSG00000081214.3) 418 ENSMUSG00000081214.3 ENSMUSG00000081214 ENSMUST00000117444 Rpl35a-ps2 processed_pseudogene Interval_143410 chr7 6471923 6472169 + 0 NA intron (ENSMUSG00000054938.7, intron 2 of 2) protein_coding-intron (ENSMUSG00000054938.7, intron 1 of 1) 4945 ENSMUSG00000054938.7 ENSMUSG00000054938 ENSMUST00000056144 Olfr1346 protein_coding Interval_72645 chr17 31287266 31287760 + 0 NA intron (ENSMUSG00000024036.16, intron 1 of 4) protein_coding-intron (ENSMUSG00000024036.16, intron 1 of 4) 9176 ENSMUSG00000118295.1 ENSMUSG00000118295 ENSMUST00000236752 Gm8437 transcribed_processed_pseudogene Interval_137640 chr6 77081773 77082766 + 0 NA intron (ENSMUSG00000063063.12, intron 2 of 7) protein_coding-intron (ENSMUSG00000063063.12, intron 9 of 17) 61674 ENSMUSG00000063063.12 ENSMUSG00000063063 ENSMUST00000160252 Ctnna2 protein_coding Interval_126914 chr5 97087110 97087842 + 0 NA exon (ENSMUSG00000034663.13, exon 16 of 16) protein_coding-exon (ENSMUSG00000034663.13, exon 16 of 16) 23967 ENSMUSG00000055725.11 ENSMUSG00000055725 ENSMUST00000132127 Paqr3 protein_coding Interval_114630 chr4 83306832 83307170 + 0 NA intron (ENSMUSG00000038172.14, intron 1 of 19) protein_coding-intron (ENSMUSG00000038172.14, intron 1 of 6) -21091 ENSMUSG00000096801.1 ENSMUSG00000096801 ENSMUST00000083017 Gm23412 snRNA Interval_135548 chr6 40339151 40339383 + 0 NA intron (ENSMUSG00000029916.11, intron 2 of 2) protein_coding-intron (ENSMUSG00000029916.11, intron 2 of 15) 13759 ENSMUSG00000029916.11 ENSMUSG00000029916 ENSMUST00000201751 Agk protein_coding Interval_81582 chr18 61816566 61817428 + 0 NA intron (ENSMUSG00000032735.15, intron 14 of 23) protein_coding-intron (ENSMUSG00000032735.15, intron 13 of 22) -30386 ENSMUSG00000033032.15 ENSMUSG00000033032 ENSMUST00000147278 Afap1l1 protein_coding Interval_71747 chr17 25836745 25837351 + 0 NA promoter-TSS (ENSMUSG00000025735.13) protein_coding-promoter-TSS (ENSMUSG00000025735.13) 203 ENSMUSG00000025735.13 ENSMUSG00000025735 ENSMUST00000184865 Rhbdl1 protein_coding Interval_15015 chr10 41933429 41933728 + 0 NA intron (ENSMUSG00000071324.11, intron 11 of 16) protein_coding-intron (ENSMUSG00000071324.11, intron 12 of 17) 35205 ENSMUSG00000038332.13 ENSMUSG00000038332 ENSMUST00000214835 Sesn1 protein_coding Interval_43609 chr13 34084140 34085196 + 0 NA intron (ENSMUSG00000113591.1, intron 4 of 4) processed_transcript-intron (ENSMUSG00000113591.1, intron 4 of 4) 4359 ENSMUSG00000114067.1 ENSMUSG00000114067 ENSMUST00000221908 Gm47065 transcribed_unprocessed_pseudogene Interval_89388 chr2 20324198 20325399 + 0 NA promoter-TSS (ENSMUSG00000091457.1) antisense-promoter-TSS (ENSMUSG00000091457.1) -128 ENSMUSG00000091457.1 ENSMUSG00000091457 ENSMUST00000168048 Gm17171 antisense Interval_65024 chr16 18551929 18552434 + 0 NA intron (ENSMUSG00000000884.17, intron 1 of 1) protein_coding-intron (ENSMUSG00000000884.17, intron 6 of 7) 36627 ENSMUSG00000009097.10 ENSMUSG00000009097 ENSMUST00000232589 Tbx1 protein_coding Interval_123523 chr5 33201634 33201895 + 0 NA intron (ENSMUSG00000037379.7, intron 2 of 3) protein_coding-intron (ENSMUSG00000037379.7, intron 2 of 3) 16431 ENSMUSG00000037379.7 ENSMUSG00000037379 ENSMUST00000201475 Spon2 protein_coding Interval_129959 chr5 123310534 123310822 + 0 NA promoter-TSS (ENSMUSG00000087063.1) antisense-promoter-TSS (ENSMUSG00000087063.1) -354 ENSMUSG00000087063.1 ENSMUSG00000087063 ENSMUST00000133476 Gm15857 antisense Interval_80708 chr18 46505900 46506809 + 0 NA exon (ENSMUSG00000033319.5, exon 3 of 3) protein_coding-exon (ENSMUSG00000033319.5, exon 3 of 3) 9269 ENSMUSG00000118116.1 ENSMUSG00000118116 ENSMUST00000235462 Gm3720 processed_pseudogene Interval_96329 chr2 121682586 121682804 + 0 NA intron (ENSMUSG00000027238.17, intron 1 of 7) protein_coding-intron (ENSMUSG00000027238.17, intron 1 of 13) 19030 ENSMUSG00000081264.1 ENSMUSG00000081264 ENSMUST00000117683 Gm14021 processed_pseudogene Interval_34952 chr12 15078855 15079166 + 0 NA intron (ENSMUSG00000113285.1, intron 2 of 5) transcribed_processed_pseudogene-intron (ENSMUSG00000113285.1, intron 4 of 6) 10893 ENSMUSG00000113285.1 ENSMUSG00000113285 ENSMUST00000222816 Gm36128 transcribed_processed_pseudogene Interval_143598 chr7 13043096 13044706 + 0 NA exon (ENSMUSG00000030380.17, exon 7 of 7) protein_coding-exon (ENSMUSG00000030380.17, exon 7 of 7) -5626 ENSMUSG00000005575.16 ENSMUSG00000005575 ENSMUST00000126827 Ube2m protein_coding Interval_138506 chr6 88793249 88793441 + 0 NA intron (ENSMUSG00000033174.17, intron 3 of 7) protein_coding-intron (ENSMUSG00000033174.17, intron 3 of 7) -5894 ENSMUSG00000107719.1 ENSMUSG00000107719 ENSMUST00000204640 Gm43937 TEC Interval_129117 chr5 117504422 117504625 + 0 NA intron (ENSMUSG00000061578.8, intron 2 of 20) protein_coding-intron (ENSMUSG00000061578.8, intron 2 of 3) -16176 ENSMUSG00000107199.1 ENSMUSG00000107199 ENSMUST00000201553 Gm42550 TEC Interval_49257 chr13 109891567 109891875 + 0 NA intron (ENSMUSG00000021699.17, intron 6 of 15) protein_coding-intron (ENSMUSG00000021699.17, intron 5 of 14) -12088 ENSMUSG00000084651.1 ENSMUSG00000084651 ENSMUST00000122702 Mir1904 miRNA Interval_25685 chr11 50766994 50767268 + 0 NA intron (ENSMUSG00000036545.9, intron 5 of 20) protein_coding-intron (ENSMUSG00000036545.9, intron 5 of 21) -41587 ENSMUSG00000085902.1 ENSMUSG00000085902 ENSMUST00000144876 Gm12200 antisense Interval_137942 chr6 83572017 83573214 + 0 NA promoter-TSS (ENSMUSG00000006906.10) protein_coding-promoter-TSS (ENSMUSG00000006906.10) -198 ENSMUSG00000006906.10 ENSMUSG00000006906 ENSMUST00000205345 Stambp protein_coding Interval_83652 chr19 3490945 3491412 + 0 NA TTS (ENSMUSG00000075908.1) snRNA-TTS (ENSMUSG00000075908.1) 869 ENSMUSG00000075908.1 ENSMUSG00000075908 ENSMUST00000101958 Gm23940 snRNA Interval_137469 chr6 72645238 72645513 + 0 NA intron (ENSMUSG00000055799.13, intron 3 of 5) protein_coding-intron (ENSMUSG00000055799.13, intron 4 of 11) -1290 ENSMUSG00000102931.1 ENSMUSG00000102931 ENSMUST00000191877 Gm38114 TEC Interval_11447 chr1 181970640 181972073 + 0 NA intron (ENSMUSG00000022995.16, intron 1 of 13) protein_coding-intron (ENSMUSG00000022995.16, intron 1 of 14) -1433 ENSMUSG00000103317.1 ENSMUSG00000103317 ENSMUST00000191884 Gm38359 TEC Interval_113749 chr4 58079629 58079935 + 0 NA intron (ENSMUSG00000028369.15, intron 36 of 47) protein_coding-intron (ENSMUSG00000028369.15, intron 36 of 47) -70658 ENSMUSG00000038709.15 ENSMUSG00000038709 ENSMUST00000239406 Txndc8 protein_coding Interval_45487 chr13 55414572 55415319 + 0 NA TTS (ENSMUSG00000021490.11) protein_coding-TTS (ENSMUSG00000021490.11) 287 ENSMUSG00000044444.6 ENSMUSG00000044444 ENSMUST00000054146 Pfn3 protein_coding Interval_157046 chr8 64761585 64761960 + 0 NA intron (ENSMUSG00000031605.8, intron 6 of 13) protein_coding-intron (ENSMUSG00000031605.8, intron 6 of 14) -30713 ENSMUSG00000031604.10 ENSMUSG00000031604 ENSMUST00000141021 Msmo1 protein_coding Interval_131201 chr5 135785133 135785438 + 0 NA TTS (ENSMUSG00000019179.10) protein_coding-TTS (ENSMUSG00000019179.10) 6600 ENSMUSG00000019179.10 ENSMUSG00000019179 ENSMUST00000143747 Mdh2 protein_coding Interval_33803 chr11 118634427 118635437 + 0 NA intron (ENSMUSG00000025576.17, intron 3 of 14) protein_coding-intron (ENSMUSG00000025576.17, intron 3 of 14) -127579 ENSMUSG00000025576.17 ENSMUSG00000025576 ENSMUST00000134774 Rbfox3 protein_coding Interval_57541 chr15 12217367 12218658 + 0 NA intron (ENSMUSG00000039458.15, intron 1 of 15) protein_coding-intron (ENSMUSG00000039458.15, intron 1 of 15) 12908 ENSMUSG00000039458.15 ENSMUSG00000039458 ENSMUST00000173071 Mtmr12 protein_coding Interval_130581 chr5 129018689 129021037 + 0 NA promoter-TSS (ENSMUSG00000029430.13) protein_coding-promoter-TSS (ENSMUSG00000029430.13) -339 ENSMUSG00000029430.13 ENSMUSG00000029430 ENSMUST00000111343 Ran protein_coding Interval_19082 chr10 94332614 94333285 + 0 NA intron (ENSMUSG00000020023.18, intron 2 of 2) protein_coding-intron (ENSMUSG00000020023.18, intron 1 of 2) -34246 ENSMUSG00000053420.6 ENSMUSG00000053420 ENSMUST00000065826 Gm4792 protein_coding Interval_153265 chr7 143044759 143045029 + 0 NA intron (ENSMUSG00000059277.12, intron 1 of 3) processed_transcript-intron (ENSMUSG00000059277.12, intron 1 of 4) 8792 ENSMUSG00000059277.12 ENSMUSG00000059277 ENSMUST00000131129 R74862 processed_transcript Interval_141653 chr6 132289271 132289831 + 0 NA Intergenic Intergenic 25206 ENSMUSG00000107874.1 ENSMUSG00000107874 ENSMUST00000048686 Prpmp5 protein_coding Interval_1443 chr1 23515600 23515876 + 0 NA Intergenic Intergenic 36199 ENSMUSG00000097920.1 ENSMUSG00000097920 ENSMUST00000180769 Gm7784 processed_pseudogene Interval_27349 chr11 66892574 66892884 + 0 NA Intergenic Intergenic -19252 ENSMUSG00000048070.4 ENSMUSG00000048070 ENSMUST00000123434 Pirt protein_coding Interval_44908 chr13 49681556 49682674 + 0 NA promoter-TSS (ENSMUSG00000037851.13) protein_coding-promoter-TSS (ENSMUSG00000037851.13) -76 ENSMUSG00000037851.13 ENSMUSG00000037851 ENSMUST00000165656 Iars protein_coding Interval_56663 chr14 121259515 121260252 + 0 NA intron (ENSMUSG00000025555.14, intron 3 of 3) protein_coding-intron (ENSMUSG00000025555.14, intron 16 of 26) 11177 ENSMUSG00000085133.2 ENSMUSG00000085133 ENSMUST00000130256 B930095G15Rik sense_intronic Interval_161739 chr8 122469827 122470229 + 0 NA intron (ENSMUSG00000014470.4, intron 2 of 4) protein_coding-intron (ENSMUSG00000014470.4, intron 2 of 5) 1684 ENSMUSG00000093124.1 ENSMUSG00000093124 ENSMUST00000175383 Gm24366 miRNA Interval_140312 chr6 116356420 116357207 + 0 NA intron (ENSMUSG00000025702.15, intron 1 of 4) protein_coding-intron (ENSMUSG00000025702.15, intron 2 of 7) 6428 ENSMUSG00000025702.15 ENSMUSG00000025702 ENSMUST00000204918 Marchf8 protein_coding Interval_126128 chr5 77807735 77807968 + 0 NA Intergenic Intergenic 101609 ENSMUSG00000106960.1 ENSMUSG00000106960 ENSMUST00000202676 Gm42673 processed_pseudogene Interval_70612 chr17 12317855 12319160 + 0 NA promoter-TSS (ENSMUSG00000097350.2) bidirectional_promoter_lncRNA-promoter-TSS (ENSMUSG00000097350.2) 241 ENSMUSG00000014426.9 ENSMUSG00000014426 ENSMUST00000233683 Map3k4 protein_coding Interval_150073 chr7 105621956 105622172 + 0 NA TTS (ENSMUSG00000110077.1) TEC-TTS (ENSMUSG00000110077.1) 2640 ENSMUSG00000110077.1 ENSMUSG00000110077 ENSMUST00000211532 Gm45632 TEC Interval_54611 chr14 71557738 71558102 + 0 NA Intergenic Intergenic 136908 ENSMUSG00000115286.1 ENSMUSG00000115286 ENSMUST00000226329 4930429C20Rik lincRNA Interval_92973 chr2 69068175 69068566 + 0 NA intron (ENSMUSG00000027035.10, intron 6 of 10) protein_coding-intron (ENSMUSG00000027035.10, intron 6 of 9) 50274 ENSMUSG00000102662.1 ENSMUSG00000102662 ENSMUST00000193253 Gm38377 TEC Interval_24225 chr11 31637916 31638446 + 0 NA Intergenic Intergenic 33546 ENSMUSG00000044502.16 ENSMUSG00000044502 ENSMUST00000109415 Bod1 protein_coding Interval_18571 chr10 87968356 87969494 + 0 NA Intergenic Intergenic 2078 ENSMUSG00000112222.1 ENSMUSG00000112222 ENSMUST00000219550 Tyms-ps processed_pseudogene Interval_104246 chr3 61833624 61834541 + 0 NA Intergenic Intergenic 235712 ENSMUSG00000104489.1 ENSMUSG00000104489 ENSMUST00000193786 Gm9700 processed_pseudogene Interval_114197 chr4 66774931 66775863 + 0 NA Intergenic Intergenic -49853 ENSMUSG00000082053.1 ENSMUSG00000082053 ENSMUST00000118844 Gm11220 processed_pseudogene Interval_15187 chr10 43226113 43227145 + 0 NA intron (ENSMUSG00000038240.13, intron 1 of 7) protein_coding-intron (ENSMUSG00000038240.13, intron 1 of 7) 4893 ENSMUSG00000038240.13 ENSMUSG00000038240 ENSMUST00000162008 Pdss2 protein_coding Interval_146652 chr7 49162869 49163101 + 0 NA intron (ENSMUSG00000052512.17, intron 2 of 39) protein_coding-intron (ENSMUSG00000052512.17, intron 2 of 39) -28709 ENSMUSG00000108950.1 ENSMUSG00000108950 ENSMUST00000208621 9130015G15Rik antisense Interval_87752 chr19 55631803 55632429 + 0 NA Intergenic Intergenic -110148 ENSMUSG00000024985.20 ENSMUSG00000024985 ENSMUST00000148666 Tcf7l2 protein_coding Interval_35592 chr12 25124280 25125766 + 0 NA Intergenic Intergenic -4151 ENSMUSG00000112937.1 ENSMUSG00000112937 ENSMUST00000223429 Gm17746 lincRNA Interval_71009 chr17 17185753 17187455 + 0 NA Intergenic Intergenic 65189 ENSMUSG00000095990.1 ENSMUSG00000095990 ENSMUST00000147630 Zfp97 protein_coding Interval_105118 chr3 81780533 81781158 + 0 NA Intergenic Intergenic -21180 ENSMUSG00000103695.1 ENSMUSG00000103695 ENSMUST00000193672 A830029E22Rik lincRNA Interval_41628 chr12 117187070 117187316 + 0 NA intron (ENSMUSG00000056553.14, intron 14 of 22) protein_coding-intron (ENSMUSG00000056553.14, intron 14 of 22) -35978 ENSMUSG00000099907.1 ENSMUSG00000099907 ENSMUST00000186114 Gm10421 processed_transcript Interval_80033 chr18 36774676 36774941 + 0 NA intron (ENSMUSG00000001380.7, intron 3 of 4) protein_coding-intron (ENSMUSG00000001380.7, intron 3 of 12) 8312 ENSMUSG00000001380.7 ENSMUSG00000001380 ENSMUST00000235863 Hars protein_coding Interval_170384 chr9 107593469 107595114 + 0 NA promoter-TSS (ENSMUSG00000103164.1) lincRNA-promoter-TSS (ENSMUSG00000103164.1) -149 ENSMUSG00000103164.1 ENSMUSG00000103164 ENSMUST00000192996 Gm38150 lincRNA Interval_25832 chr11 52020600 52021268 + 0 NA intron (ENSMUSG00000020389.19, intron 4 of 12) protein_coding-intron (ENSMUSG00000020389.19, intron 5 of 12) -12596 ENSMUSG00000020389.19 ENSMUSG00000020389 ENSMUST00000207272 Cdkl3 protein_coding Interval_109321 chr3 138896860 138898143 + 0 NA TTS (ENSMUSG00000028152.10) protein_coding-TTS (ENSMUSG00000028152.10) -68339 ENSMUSG00000086123.3 ENSMUSG00000086123 ENSMUST00000153140 Gm16060 processed_pseudogene Interval_151877 chr7 127259700 127261200 + 0 NA intron (ENSMUSG00000042462.4, intron 1 of 2) protein_coding-intron (ENSMUSG00000042462.4, intron 1 of 2) 259 ENSMUSG00000042462.4 ENSMUSG00000042462 ENSMUST00000035276 Dctpp1 protein_coding Interval_135848 chr6 47919289 47919497 + 0 NA Intergenic Intergenic -6913 ENSMUSG00000052763.7 ENSMUSG00000052763 ENSMUST00000156500 Zfp212 protein_coding Interval_77423 chr17 88603462 88604311 + 0 NA intron (ENSMUSG00000033855.15, intron 1 of 2) protein_coding-intron (ENSMUSG00000033855.15, intron 1 of 1) 4658 ENSMUSG00000117398.1 ENSMUSG00000117398 ENSMUST00000234525 Gm9406 processed_pseudogene Interval_122255 chr5 20706602 20706819 + 0 NA TTS (ENSMUSG00000073174.6) 3prime_overlapping_ncRNA-TTS (ENSMUSG00000073174.6) 4433 ENSMUSG00000073174.6 ENSMUSG00000073174 ENSMUST00000189302 Gm29254 3prime_overlapping_ncRNA Interval_96859 chr2 129061607 129062434 + 0 NA intron (ENSMUSG00000087151.1, intron 1 of 1) processed_transcript-intron (ENSMUSG00000087151.1, intron 1 of 1) 3666 ENSMUSG00000087151.1 ENSMUSG00000087151 ENSMUST00000143857 Gm14022 processed_transcript Interval_133634 chr6 7831063 7831578 + 0 NA Intergenic Intergenic 4339 ENSMUSG00000107844.1 ENSMUSG00000107844 ENSMUST00000203028 Gm8686 processed_pseudogene Interval_166984 chr9 64302993 64303863 + 0 NA intron (ENSMUSG00000032397.7, intron 7 of 7) protein_coding-intron (ENSMUSG00000032397.7, intron 7 of 7) 7497 ENSMUSG00000088254.1 ENSMUSG00000088254 ENSMUST00000157629 Gm24289 scaRNA Interval_113882 chr4 59548502 59549911 + 0 NA promoter-TSS (ENSMUSG00000046145.7) pseudogene-promoter-TSS (ENSMUSG00000046145.7) 46 ENSMUSG00000028382.15 ENSMUSG00000028382 ENSMUST00000140925 Ptbp3 protein_coding Interval_48976 chr13 106632442 106633345 + 0 NA Intergenic Intergenic -85833 ENSMUSG00000059877.3 ENSMUSG00000059877 ENSMUST00000076359 Dph3b-ps processed_pseudogene Interval_8602 chr1 143733602 143734556 + 0 NA intron (ENSMUSG00000018196.18, intron 5 of 9) protein_coding-intron (ENSMUSG00000018196.18, intron 5 of 9) -9336 ENSMUSG00000018196.18 ENSMUSG00000018196 ENSMUST00000152435 Glrx2 protein_coding Interval_163719 chr9 24861461 24861754 + 0 NA Intergenic Intergenic -34262 ENSMUSG00000111507.1 ENSMUSG00000111507 ENSMUST00000214455 Amd-ps6 processed_pseudogene Interval_4615 chr1 75456806 75457430 + 0 NA intron (ENSMUSG00000033007.15, intron 1 of 8) protein_coding-intron (ENSMUSG00000033007.15, intron 1 of 9) 6682 ENSMUSG00000033007.15 ENSMUSG00000033007 ENSMUST00000037708 Asic4 protein_coding Interval_98502 chr2 152819868 152821447 + 0 NA intron (ENSMUSG00000007659.18, intron 2 of 2) protein_coding-intron (ENSMUSG00000007659.18, intron 2 of 2) 7878 ENSMUSG00000007659.18 ENSMUSG00000007659 ENSMUST00000156688 Bcl2l1 protein_coding Interval_4029 chr1 66723065 66723539 + 0 NA exon (ENSMUSG00000026004.15, exon 12 of 14) protein_coding-exon (ENSMUSG00000026004.15, exon 12 of 14) 22395 ENSMUSG00000026005.15 ENSMUSG00000026005 ENSMUST00000190404 Rpe protein_coding Interval_78901 chr18 21354770 21355027 + 0 NA Intergenic Intergenic -22219 ENSMUSG00000117590.1 ENSMUSG00000117590 ENSMUST00000234999 Gm50052 processed_pseudogene Interval_121256 chr4 154445545 154446741 + 0 NA intron (ENSMUSG00000039410.16, intron 3 of 15) protein_coding-intron (ENSMUSG00000039410.16, intron 3 of 16) -104139 ENSMUSG00000086565.1 ENSMUSG00000086565 ENSMUST00000143888 Gm13133 antisense Interval_139742 chr6 108282654 108283519 + 0 NA intron (ENSMUSG00000030102.11, intron 1 of 22) protein_coding-intron (ENSMUSG00000030102.11, intron 4 of 61) -97530 ENSMUSG00000030101.15 ENSMUSG00000030101 ENSMUST00000171697 Sumf1 protein_coding Interval_13010 chr10 9228225 9229529 + 0 NA Intergenic Intergenic -4126 ENSMUSG00000112543.1 ENSMUSG00000112543 ENSMUST00000218588 Gm48744 TEC Interval_78452 chr18 12924669 12925399 + 0 NA intron (ENSMUSG00000044252.18, intron 4 of 7) protein_coding-intron (ENSMUSG00000044252.18, intron 4 of 27) 26607 ENSMUSG00000080866.1 ENSMUSG00000080866 ENSMUST00000118252 Gm5687 processed_pseudogene Interval_124819 chr5 55392193 55392397 + 0 NA Intergenic Intergenic -88714 ENSMUSG00000065795.1 ENSMUSG00000065795 ENSMUST00000083861 Gm25513 snRNA Interval_127013 chr5 99597882 99598900 + 0 NA intron (ENSMUSG00000089809.9, intron 1 of 2) protein_coding-intron (ENSMUSG00000089809.9, intron 1 of 1) 13042 ENSMUSG00000089627.1 ENSMUSG00000089627 ENSMUST00000162286 Gm16228 processed_pseudogene Interval_12001 chr1 188688557 188689586 + 0 NA intron (ENSMUSG00000026609.15, intron 37 of 70) protein_coding-intron (ENSMUSG00000026609.15, intron 37 of 70) -66018 ENSMUSG00000077235.1 ENSMUSG00000077235 ENSMUST00000104047 Gm25095 snoRNA Interval_127485 chr5 104402631 104403177 + 0 NA Intergenic Intergenic -32217 ENSMUSG00000105954.1 ENSMUSG00000105954 ENSMUST00000199139 Gm42793 TEC Interval_53594 chr14 59677564 59677957 + 0 NA intron (ENSMUSG00000021983.16, intron 34 of 35) protein_coding-intron (ENSMUSG00000021983.16, intron 34 of 35) 35212 ENSMUSG00000114593.1 ENSMUSG00000114593 ENSMUST00000224256 Gm19716 transcribed_processed_pseudogene Interval_101008 chr2 174227214 174227403 + 0 NA Intergenic Intergenic -20620 ENSMUSG00000098467.1 ENSMUSG00000098467 ENSMUST00000184218 Gm27591 miRNA Interval_7470 chr1 131652717 131653588 + 0 NA intron (ENSMUSG00000004552.16, intron 1 of 8) protein_coding-intron (ENSMUSG00000004552.16, intron 1 of 9) -8759 ENSMUSG00000004552.16 ENSMUSG00000004552 ENSMUST00000141061 Ctse protein_coding Interval_21366 chr10 128184349 128184835 + 0 NA Intergenic Intergenic -4295 ENSMUSG00000040043.17 ENSMUSG00000040043 ENSMUST00000218884 Rbms2 protein_coding Interval_123075 chr5 29423207 29424297 + 0 NA Intergenic Intergenic -17566 ENSMUSG00000001569.10 ENSMUSG00000001569 ENSMUST00000146347 Nom1 protein_coding Interval_152015 chr7 128276119 128277543 + 0 NA intron (ENSMUSG00000030780.15, intron 6 of 11) protein_coding-intron (ENSMUSG00000030780.15, intron 6 of 12) 11148 ENSMUSG00000030781.13 ENSMUSG00000030781 ENSMUST00000206703 Slc5a2 protein_coding Interval_23090 chr11 19875393 19876171 + 0 NA Intergenic Intergenic -78788 ENSMUSG00000045671.17 ENSMUSG00000045671 ENSMUST00000123036 Spred2 protein_coding Interval_133738 chr6 10926474 10926664 + 0 NA intron (ENSMUSG00000107847.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000107847.1, intron 1 of 2) 31079 ENSMUSG00000107847.1 ENSMUSG00000107847 ENSMUST00000204954 Gm35822 lincRNA Interval_174044 chrX 132130874 132131082 + 0 NA Intergenic Intergenic 39129 ENSMUSG00000082205.1 ENSMUSG00000082205 ENSMUST00000119209 Gm7058 processed_pseudogene Interval_90668 chr2 31778793 31779936 + 0 NA TTS (ENSMUSG00000026842.16) protein_coding-TTS (ENSMUSG00000026842.16) 31216 ENSMUSG00000043102.2 ENSMUSG00000043102 ENSMUST00000057407 Qrfp protein_coding Interval_82437 chr18 73990246 73990526 + 0 NA intron (ENSMUSG00000024558.12, intron 1 of 1) protein_coding-intron (ENSMUSG00000024558.12, intron 1 of 5) -27521 ENSMUSG00000090263.1 ENSMUSG00000090263 ENSMUST00000159260 D730045A05Rik lincRNA Interval_83994 chr19 5994653 5994876 + 0 NA exon (ENSMUSG00000024942.17, exon 13 of 22) protein_coding-exon (ENSMUSG00000024942.17, exon 13 of 22) -8621 ENSMUSG00000037451.8 ENSMUSG00000037451 ENSMUST00000237046 Slc22a20 protein_coding Interval_93312 chr2 71860992 71861230 + 0 NA Intergenic Intergenic -12235 ENSMUSG00000006494.11 ENSMUSG00000006494 ENSMUST00000129427 Pdk1 protein_coding Interval_153386 chr7 144263275 144263471 + 0 NA intron (ENSMUSG00000037541.22, intron 2 of 12) protein_coding-intron (ENSMUSG00000037541.22, intron 5 of 15) 24648 ENSMUSG00000037541.22 ENSMUSG00000037541 ENSMUST00000136979 Shank2 protein_coding Interval_153686 chr8 4602402 4602841 + 0 NA Intergenic Intergenic -10546 ENSMUSG00000058748.9 ENSMUSG00000058748 ENSMUST00000073201 Zfp958 protein_coding Interval_61579 chr15 82622408 82622653 + 0 NA intron (ENSMUSG00000116130.1, intron 1 of 1) antisense-intron (ENSMUSG00000116130.1, intron 1 of 1) 1438 ENSMUSG00000116130.1 ENSMUSG00000116130 ENSMUST00000231012 Gm49431 antisense Interval_53782 chr14 61710587 61713292 + 0 NA Intergenic Intergenic 28429 ENSMUSG00000104187.1 ENSMUSG00000104187 ENSMUST00000194021 Gm37820 TEC Interval_50661 chr14 17736924 17737873 + 0 NA intron (ENSMUSG00000021779.17, intron 1 of 1) protein_coding-intron (ENSMUSG00000021779.17, intron 1 of 9) 33724 ENSMUSG00000114281.1 ENSMUSG00000114281 ENSMUST00000225878 Gm48320 processed_pseudogene Interval_138709 chr6 91325095 91325450 + 0 NA Intergenic Intergenic 39825 ENSMUSG00000030093.7 ENSMUSG00000030093 ENSMUST00000132936 Wnt7a protein_coding Interval_90392 chr2 30148546 30150455 + 0 NA intron (ENSMUSG00000039678.12, intron 11 of 11) protein_coding-intron (ENSMUSG00000039678.12, intron 11 of 11) -9898 ENSMUSG00000085401.2 ENSMUSG00000085401 ENSMUST00000120862 Slc39a1-ps processed_pseudogene Interval_160258 chr8 107514305 107514624 + 0 NA intron (ENSMUSG00000031930.11, intron 7 of 7) protein_coding-intron (ENSMUSG00000031930.11, intron 7 of 23) -36780 ENSMUSG00000065439.1 ENSMUSG00000065439 ENSMUST00000083505 Mir140 miRNA Interval_92736 chr2 64840873 64841102 + 0 NA Intergenic Intergenic 27601 ENSMUSG00000084104.1 ENSMUSG00000084104 ENSMUST00000120849 Gm13578 processed_pseudogene Interval_109297 chr3 138752917 138753607 + 0 NA intron (ENSMUSG00000028152.10, intron 1 of 3) protein_coding-intron (ENSMUSG00000028152.10, intron 1 of 7) 10493 ENSMUSG00000028152.10 ENSMUSG00000028152 ENSMUST00000121826 Tspan5 protein_coding Interval_63129 chr15 99241819 99242108 + 0 NA TTS (ENSMUSG00000037570.16) protein_coding-TTS (ENSMUSG00000037570.16) 4058 ENSMUSG00000037579.7 ENSMUSG00000037579 ENSMUST00000230552 Kcnh3 protein_coding Interval_123997 chr5 37077214 37078991 + 0 NA intron (ENSMUSG00000063646.18, intron 1 of 1) protein_coding-intron (ENSMUSG00000063646.18, intron 1 of 12) -7268 ENSMUSG00000117286.1 ENSMUSG00000117286 ENSMUST00000094840 Gm1043 protein_coding Interval_35454 chr12 21952552 21952785 + 0 NA Intergenic Intergenic -88245 ENSMUSG00000094691.1 ENSMUSG00000094691 ENSMUST00000177620 Gm22908 miRNA Interval_170862 chr9 111294978 111295768 + 0 NA Intergenic Intergenic 21271 ENSMUSG00000046785.8 ENSMUSG00000046785 ENSMUST00000200053 Epm2aip1 protein_coding Interval_54783 chr14 75028865 75029366 + 0 NA intron (ENSMUSG00000034959.8, intron 1 of 13) protein_coding-intron (ENSMUSG00000034959.8, intron 1 of 13) -7507 ENSMUSG00000034959.8 ENSMUSG00000034959 ENSMUST00000228689 Rubcnl protein_coding Interval_32011 chr11 104434732 104434962 + 0 NA intron (ENSMUSG00000018412.16, intron 1 of 2) protein_coding-intron (ENSMUSG00000018412.16, intron 2 of 14) -9547 ENSMUSG00000106014.1 ENSMUSG00000106014 ENSMUST00000195891 Gm47315 miRNA Interval_54721 chr14 73574171 73576358 + 0 NA intron (ENSMUSG00000022110.13, intron 4 of 10) protein_coding-intron (ENSMUSG00000022110.13, intron 4 of 11) 22632 ENSMUSG00000022110.13 ENSMUSG00000022110 ENSMUST00000159165 Sucla2 protein_coding Interval_64162 chr16 8780818 8781643 + 0 NA intron (ENSMUSG00000022710.17, intron 1 of 31) protein_coding-intron (ENSMUSG00000022710.17, intron 1 of 31) -14954 ENSMUSG00000084737.1 ENSMUSG00000084737 ENSMUST00000122788 Gm25805 snRNA Interval_30557 chr11 95105214 95107352 + 0 NA Intergenic Intergenic -13836 ENSMUSG00000001510.8 ENSMUSG00000001510 ENSMUST00000092768 Dlx3 protein_coding Interval_134596 chr6 29832941 29833807 + 0 NA intron (ENSMUSG00000029772.17, intron 3 of 4) protein_coding-intron (ENSMUSG00000029772.17, intron 1 of 16) -43305 ENSMUSG00000029772.17 ENSMUSG00000029772 ENSMUST00000128837 Ahcyl2 protein_coding Interval_89168 chr2 17821872 17822956 + 0 NA Intergenic Intergenic -24430 ENSMUSG00000081851.1 ENSMUSG00000081851 ENSMUST00000120245 Gm13323 processed_pseudogene Interval_20394 chr10 117316638 117316897 + 0 NA Intergenic Intergenic -23899 ENSMUSG00000069515.6 ENSMUSG00000069515 ENSMUST00000092162 Lyz1 protein_coding Interval_172956 chrX 57764058 57765163 + 0 NA Intergenic Intergenic -10742 ENSMUSG00000083821.1 ENSMUSG00000083821 ENSMUST00000119067 Gm14631 processed_pseudogene Interval_137618 chr6 76047989 76048282 + 0 NA Intergenic Intergenic -73152 ENSMUSG00000107880.1 ENSMUSG00000107880 ENSMUST00000203510 Gm44113 lincRNA Interval_129274 chr5 118594663 118595107 + 0 NA intron (ENSMUSG00000018076.12, intron 2 of 4) protein_coding-intron (ENSMUSG00000018076.12, intron 2 of 30) -7831 ENSMUSG00000107286.1 ENSMUSG00000107286 ENSMUST00000201539 Gm43788 TEC Interval_43769 chr13 36246055 36246546 + 0 NA intron (ENSMUSG00000021420.13, intron 2 of 3) protein_coding-intron (ENSMUSG00000021420.13, intron 3 of 6) -6059 ENSMUSG00000114617.1 ENSMUSG00000114617 ENSMUST00000225563 Gm48766 TEC Interval_43899 chr13 37943539 37944641 + 0 NA intron (ENSMUSG00000039087.17, intron 11 of 12) protein_coding-intron (ENSMUSG00000039087.17, intron 10 of 11) -2926 ENSMUSG00000039087.17 ENSMUSG00000039087 ENSMUST00000162849 Rreb1 protein_coding Interval_108062 chr3 121291368 121292320 + 0 NA promoter-TSS (ENSMUSG00000039887.11) protein_coding-promoter-TSS (ENSMUSG00000039887.11) 17 ENSMUSG00000039887.11 ENSMUSG00000039887 ENSMUST00000198341 Alg14 protein_coding Interval_108132 chr3 121772590 121773243 + 0 NA intron (ENSMUSG00000028127.10, intron 14 of 21) protein_coding-intron (ENSMUSG00000028127.10, intron 15 of 22) -8012 ENSMUSG00000106087.1 ENSMUSG00000106087 ENSMUST00000199084 Gm43609 TEC Interval_112656 chr4 43860249 43861609 + 0 NA Intergenic Intergenic 9364 ENSMUSG00000071000.3 ENSMUSG00000071000 ENSMUST00000095108 Olfr155 protein_coding Interval_58082 chr15 27746080 27746253 + 0 NA TTS (ENSMUSG00000022263.10) protein_coding-TTS (ENSMUSG00000022263.10) -86014 ENSMUSG00000056069.10 ENSMUSG00000056069 ENSMUST00000232492 Otulinl protein_coding Interval_110142 chr3 153674912 153676449 + 0 NA intron (ENSMUSG00000052544.9, intron 1 of 4) protein_coding-intron (ENSMUSG00000052544.9, intron 1 of 2) -33231 ENSMUSG00000089237.1 ENSMUSG00000089237 ENSMUST00000158612 Gm22206 snoRNA Interval_121738 chr5 6112830 6113255 + 0 NA Intergenic Intergenic -98018 ENSMUSG00000088692.1 ENSMUSG00000088692 ENSMUST00000158067 Gm23838 snRNA Interval_149672 chr7 100536536 100537436 + 0 NA promoter-TSS (ENSMUSG00000044881.7) protein_coding-promoter-TSS (ENSMUSG00000044881.7) -85 ENSMUSG00000044881.7 ENSMUSG00000044881 ENSMUST00000120454 Coa4 protein_coding Interval_171033 chr9 113837206 113837706 + 0 NA intron (ENSMUSG00000033392.16, intron 9 of 10) protein_coding-intron (ENSMUSG00000033392.16, intron 3 of 32) -61158 ENSMUSG00000087992.1 ENSMUSG00000087992 ENSMUST00000157367 Gm25059 snoRNA Interval_125417 chr5 66882789 66883528 + 0 NA intron (ENSMUSG00000037736.20, intron 3 of 31) protein_coding-intron (ENSMUSG00000037736.20, intron 3 of 25) -7208 ENSMUSG00000082420.2 ENSMUSG00000082420 ENSMUST00000121056 Gm6517 processed_pseudogene Interval_17968 chr10 81125196 81127022 + 0 NA intron (ENSMUSG00000035027.18, intron 5 of 6) protein_coding-intron (ENSMUSG00000035027.18, intron 5 of 6) 6769 ENSMUSG00000035027.18 ENSMUSG00000035027 ENSMUST00000218571 Map2k2 protein_coding Interval_146013 chr7 43114157 43114573 + 0 NA intron (ENSMUSG00000064194.10, intron 1 of 3) protein_coding-intron (ENSMUSG00000064194.10, intron 1 of 3) 136 ENSMUSG00000064194.10 ENSMUSG00000064194 ENSMUST00000072829 Zfp936 protein_coding Interval_24895 chr11 40935101 40935321 + 0 NA Intergenic Intergenic 99912 ENSMUSG00000065916.1 ENSMUSG00000065916 ENSMUST00000083982 Gm24446 snRNA Interval_117657 chr4 125338890 125339391 + 0 NA Intergenic Intergenic 110543 ENSMUSG00000087010.1 ENSMUSG00000087010 ENSMUST00000130055 1700041M05Rik lincRNA Interval_169140 chr9 94134372 94134993 + 0 NA Intergenic Intergenic -4780 ENSMUSG00000111352.1 ENSMUSG00000111352 ENSMUST00000217499 Gm5369 processed_pseudogene Interval_151149 chr7 118823718 118824773 + 0 NA promoter-TSS (ENSMUSG00000030982.19) protein_coding-promoter-TSS (ENSMUSG00000030982.19) -1459 ENSMUSG00000030982.19 ENSMUSG00000030982 ENSMUST00000209103 Vps35l protein_coding Interval_161875 chr8 123361069 123362325 + 0 NA intron (ENSMUSG00000010154.7, intron 9 of 13) protein_coding-intron (ENSMUSG00000010154.7, intron 10 of 14) 11446 ENSMUSG00000010154.7 ENSMUSG00000010154 ENSMUST00000212404 Spire2 protein_coding Interval_131560 chr5 138130784 138131185 + 0 NA intron (ENSMUSG00000037017.15, intron 3 of 3) protein_coding-intron (ENSMUSG00000037017.15, intron 4 of 4) 14004 ENSMUSG00000037017.15 ENSMUSG00000037017 ENSMUST00000110959 Zscan21 protein_coding Interval_154640 chr8 22214667 22214890 + 0 NA intron (ENSMUSG00000031479.9, intron 10 of 13) protein_coding-intron (ENSMUSG00000031479.9, intron 10 of 13) -2215 ENSMUSG00000031479.9 ENSMUSG00000031479 ENSMUST00000153949 Vps36 protein_coding Interval_56336 chr14 117800262 117800543 + 0 NA intron (ENSMUSG00000058571.11, intron 4 of 9) protein_coding-intron (ENSMUSG00000058571.11, intron 4 of 8) 153445 ENSMUSG00000098648.1 ENSMUSG00000098648 ENSMUST00000183564 Mir6239 miRNA Interval_84694 chr19 15384041 15384360 + 0 NA Intergenic Intergenic -295804 ENSMUSG00000094850.1 ENSMUSG00000094850 ENSMUST00000083389 Gm24319 snRNA Interval_97123 chr2 131448268 131448582 + 0 NA Intergenic Intergenic 6215 ENSMUSG00000083671.1 ENSMUSG00000083671 ENSMUST00000117272 Gm14304 processed_pseudogene Interval_5058 chr1 84731552 84732883 + 0 NA promoter-TSS (ENSMUSG00000026219.14) protein_coding-promoter-TSS (ENSMUSG00000026219.14) -3341 ENSMUSG00000026219.14 ENSMUSG00000026219 ENSMUST00000187818 Trip12 protein_coding Interval_108276 chr3 123222956 123223166 + 0 NA intron (ENSMUSG00000050315.14, intron 1 of 1) protein_coding-intron (ENSMUSG00000050315.14, intron 1 of 4) -11114 ENSMUSG00000106490.1 ENSMUSG00000106490 ENSMUST00000199138 Gm43283 TEC Interval_161772 chr8 122677230 122679085 + 0 NA promoter-TSS (ENSMUSG00000006362.16) protein_coding-promoter-TSS (ENSMUSG00000006362.16) 5682 ENSMUSG00000085917.1 ENSMUSG00000085917 ENSMUST00000128586 Gm15899 processed_pseudogene Interval_94181 chr2 84886342 84890203 + 0 NA Intergenic Intergenic -1562 ENSMUSG00000050896.12 ENSMUSG00000050896 ENSMUST00000151759 Rtn4rl2 protein_coding Interval_55186 chr14 79134870 79135397 + 0 NA intron (ENSMUSG00000058997.8, intron 37 of 44) protein_coding-intron (ENSMUSG00000058997.8, intron 37 of 44) -8788 ENSMUSG00000058997.8 ENSMUSG00000058997 ENSMUST00000228904 Vwa8 protein_coding Interval_103089 chr3 35168002 35168508 + 0 NA Intergenic Intergenic 107876 ENSMUSG00000105651.1 ENSMUSG00000105651 ENSMUST00000198307 1700017M07Rik lincRNA Interval_145436 chr7 34743223 34744151 + 0 NA intron (ENSMUSG00000060402.8, intron 2 of 2) protein_coding-intron (ENSMUSG00000060402.8, intron 2 of 3) 10125 ENSMUSG00000060402.8 ENSMUSG00000060402 ENSMUST00000205390 Chst8 protein_coding Interval_8149 chr1 136087416 136087738 + 0 NA intron (ENSMUSG00000026407.17, intron 9 of 37) protein_coding-intron (ENSMUSG00000026407.17, intron 14 of 43) 14023 ENSMUSG00000026407.17 ENSMUSG00000026407 ENSMUST00000159106 Cacna1s protein_coding Interval_68404 chr16 75952445 75952890 + 0 NA intron (ENSMUSG00000022876.18, intron 5 of 6) protein_coding-intron (ENSMUSG00000022876.18, intron 5 of 13) -48117 ENSMUSG00000087214.2 ENSMUSG00000087214 ENSMUST00000128832 Gm15555 antisense Interval_162153 chr8 125550644 125550924 + 0 NA intron (ENSMUSG00000001995.9, intron 1 of 22) protein_coding-intron (ENSMUSG00000001995.9, intron 1 of 21) 19024 ENSMUSG00000001995.9 ENSMUSG00000001995 ENSMUST00000212604 Sipa1l2 protein_coding Interval_38960 chr12 84132215 84132709 + 0 NA intron (ENSMUSG00000042523.12, intron 2 of 4) protein_coding-intron (ENSMUSG00000042523.12, intron 5 of 7) 16027 ENSMUSG00000054383.2 ENSMUSG00000054383 ENSMUST00000061425 Pnma1 protein_coding Interval_112441 chr4 41295530 41296186 + 0 NA intron (ENSMUSG00000028436.8, intron 7 of 8) protein_coding-intron (ENSMUSG00000028436.8, intron 7 of 8) -7300 ENSMUSG00000065873.1 ENSMUSG00000065873 ENSMUST00000083939 n-R5s183 rRNA Interval_71929 chr17 27063213 27064321 + 0 NA intron (ENSMUSG00000042644.9, intron 1 of 57) protein_coding-intron (ENSMUSG00000042644.9, intron 1 of 57) -12353 ENSMUSG00000117799.1 ENSMUSG00000117799 ENSMUST00000236359 Gm50295 lincRNA Interval_4684 chr1 76940619 76940986 + 0 NA intron (ENSMUSG00000100534.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000100534.1, intron 1 of 1) 86990 ENSMUSG00000100534.1 ENSMUSG00000100534 ENSMUST00000191156 Gm816 lincRNA Interval_117964 chr4 127363254 127363891 + 0 NA Intergenic Intergenic -5391 ENSMUSG00000042357.2 ENSMUSG00000042357 ENSMUST00000046498 Gjb5 protein_coding Interval_130376 chr5 127056535 127056817 + 0 NA intron (ENSMUSG00000105490.1, intron 1 of 6) lincRNA-intron (ENSMUSG00000105490.1, intron 1 of 6) 25886 ENSMUSG00000105490.1 ENSMUSG00000105490 ENSMUST00000197983 4933438B17Rik lincRNA Interval_153581 chr8 3515087 3517357 + 0 NA promoter-TSS (ENSMUSG00000004565.15) protein_coding-promoter-TSS (ENSMUSG00000004565.15) 4421 ENSMUSG00000004567.16 ENSMUSG00000004567 ENSMUST00000161705 Mcoln1 protein_coding Interval_45368 chr13 54676718 54677060 + 0 NA Intergenic Intergenic 10919 ENSMUSG00000034928.16 ENSMUSG00000034928 ENSMUST00000150626 Rnf44 protein_coding Interval_139468 chr6 100376705 100379020 + 0 NA Intergenic Intergenic -91114 ENSMUSG00000072872.3 ENSMUSG00000072872 ENSMUST00000205164 Rybp protein_coding Interval_114259 chr4 70265132 70265635 + 0 NA promoter-TSS (ENSMUSG00000039298.16) protein_coding-promoter-TSS (ENSMUSG00000039298.16) -16010 ENSMUSG00000080902.1 ENSMUSG00000080902 ENSMUST00000120944 Ywhaq-ps3 transcribed_processed_pseudogene Interval_102759 chr3 30845956 30846319 + 0 NA Intergenic Intergenic -9856 ENSMUSG00000037661.14 ENSMUSG00000037661 ENSMUST00000147697 Gpr160 protein_coding Interval_75457 chr17 66693769 66695076 + 0 NA promoter-TSS (ENSMUSG00000033278.10) protein_coding-promoter-TSS (ENSMUSG00000033278.10) -12228 ENSMUSG00000117065.1 ENSMUSG00000117065 ENSMUST00000232933 Gm49941 processed_pseudogene Interval_42075 chr13 8029745 8032015 + 0 NA exon (ENSMUSG00000113508.1, exon 1 of 2) transcribed_processed_pseudogene-exon (ENSMUSG00000113508.1, exon 1 of 2) 473 ENSMUSG00000113508.1 ENSMUSG00000113508 ENSMUST00000222219 Gm9742 transcribed_processed_pseudogene Interval_13142 chr10 12364377 12364680 + 0 NA TTS (ENSMUSG00000065096.1) snRNA-TTS (ENSMUSG00000065096.1) 1118 ENSMUSG00000065096.1 ENSMUSG00000065096 ENSMUST00000083162 Gm23680 snRNA Interval_112579 chr4 43371447 43372496 + 0 NA intron (ENSMUSG00000028457.18, intron 27 of 28) protein_coding-intron (ENSMUSG00000028457.18, intron 28 of 29) -42725 ENSMUSG00000035969.15 ENSMUSG00000035969 ENSMUST00000123447 Rusc2 protein_coding Interval_170408 chr9 107723154 107724613 + 0 NA Intergenic Intergenic 36680 ENSMUSG00000032580.12 ENSMUSG00000032580 ENSMUST00000181993 Rbm5 protein_coding Interval_130894 chr5 133675080 133677211 + 0 NA Intergenic Intergenic -77739 ENSMUSG00000105227.1 ENSMUSG00000105227 ENSMUST00000196125 Gm36667 lincRNA Interval_85314 chr19 24601440 24602233 + 0 NA Intergenic Intergenic 45484 ENSMUSG00000117979.1 ENSMUSG00000117979 ENSMUST00000235982 Gm50341 lincRNA Interval_143881 chr7 16905549 16905954 + 0 NA promoter-TSS (ENSMUSG00000043017.9) protein_coding-promoter-TSS (ENSMUSG00000043017.9) -763 ENSMUSG00000043017.9 ENSMUSG00000043017 ENSMUST00000144408 Ptgir protein_coding Interval_49098 chr13 108012720 108012985 + 0 NA intron (ENSMUSG00000068184.7, intron 2 of 3) protein_coding-intron (ENSMUSG00000068184.7, intron 2 of 3) 16567 ENSMUSG00000114627.1 ENSMUSG00000114627 ENSMUST00000224800 B230220B15Rik lincRNA Interval_99830 chr2 165177128 165177596 + 0 NA intron (ENSMUSG00000053166.14, intron 1 of 10) protein_coding-intron (ENSMUSG00000053166.14, intron 2 of 11) 4097 ENSMUSG00000053166.14 ENSMUSG00000053166 ENSMUST00000138643 Cdh22 protein_coding Interval_85898 chr19 32832831 32833340 + 0 NA Intergenic Intergenic 21860 ENSMUSG00000013663.7 ENSMUSG00000013663 ENSMUST00000154806 Pten protein_coding Interval_5445 chr1 88836233 88837466 + 0 NA Intergenic Intergenic 38561 ENSMUSG00000099848.1 ENSMUSG00000099848 ENSMUST00000185425 Gm29337 lincRNA Interval_36541 chr12 49076337 49077107 + 0 NA Intergenic Intergenic -63534 ENSMUSG00000098099.1 ENSMUSG00000098099 ENSMUST00000182862 Gm7456 processed_pseudogene Interval_106186 chr3 94448302 94448655 + 0 NA exon (ENSMUSG00000028140.13, exon 7 of 7) protein_coding-exon (ENSMUSG00000028140.13, exon 7 of 7) -4691 ENSMUSG00000104695.1 ENSMUSG00000104695 ENSMUST00000197970 Gm30023 processed_pseudogene Interval_99827 chr2 165161837 165162699 + 0 NA intron (ENSMUSG00000086630.1, intron 3 of 4) protein_coding-intron (ENSMUSG00000053166.14, intron 3 of 11) 2856 ENSMUSG00000086630.1 ENSMUSG00000086630 ENSMUST00000124728 Gm14397 antisense Interval_26341 chr11 56749822 56750981 + 0 NA Intergenic Intergenic 267452 ENSMUSG00000088228.1 ENSMUSG00000088228 ENSMUST00000157603 Gm22603 snoRNA Interval_25414 chr11 47886884 47887638 + 0 NA intron (ENSMUSG00000020354.15, intron 1 of 2) protein_coding-intron (ENSMUSG00000020354.15, intron 1 of 2) 25284 ENSMUSG00000065804.1 ENSMUSG00000065804 ENSMUST00000083870 Gm23039 snRNA Interval_16116 chr10 60819910 60820145 + 0 NA intron (ENSMUSG00000020099.8, intron 1 of 15) protein_coding-intron (ENSMUSG00000020099.8, intron 1 of 16) -5704 ENSMUSG00000112592.1 ENSMUSG00000112592 ENSMUST00000218180 Gm19972 TEC Interval_171352 chr9 116817224 116817428 + 0 NA intron (ENSMUSG00000039607.17, intron 7 of 15) protein_coding-intron (ENSMUSG00000039607.17, intron 5 of 12) -241832 ENSMUSG00000092184.1 ENSMUSG00000092184 ENSMUST00000172565 Gm18489 processed_pseudogene Interval_63099 chr15 99055300 99057080 + 0 NA intron (ENSMUSG00000023484.14, intron 2 of 7) protein_coding-intron (ENSMUSG00000023484.14, intron 2 of 8) 1016 ENSMUSG00000023484.14 ENSMUSG00000023484 ENSMUST00000229268 Prph protein_coding Interval_91814 chr2 49826455 49826734 + 0 NA intron (ENSMUSG00000026765.12, intron 1 of 9) protein_coding-intron (ENSMUSG00000026765.12, intron 1 of 9) -13646 ENSMUSG00000085357.1 ENSMUSG00000085357 ENSMUST00000125095 Gm13480 lincRNA Interval_164436 chr9 37013261 37013823 + 0 NA intron (ENSMUSG00000035934.16, intron 2 of 4) protein_coding-intron (ENSMUSG00000035934.16, intron 2 of 12) -2216 ENSMUSG00000093721.1 ENSMUSG00000093721 ENSMUST00000176020 Gm3896 antisense Interval_117088 chr4 119453688 119453949 + 0 NA exon (ENSMUSG00000070806.5, exon 8 of 8) protein_coding-exon (ENSMUSG00000070806.5, exon 8 of 8) 30946 ENSMUSG00000070806.5 ENSMUSG00000070806 ENSMUST00000129150 Zmynd12 protein_coding Interval_141287 chr6 126885305 126885581 + 0 NA promoter-TSS (ENSMUSG00000030345.16) protein_coding-promoter-TSS (ENSMUSG00000030345.16) -59 ENSMUSG00000030345.16 ENSMUSG00000030345 ENSMUST00000032495 Dyrk4 protein_coding Interval_114195 chr4 66737281 66738117 + 0 NA Intergenic Intergenic -12155 ENSMUSG00000082053.1 ENSMUSG00000082053 ENSMUST00000118844 Gm11220 processed_pseudogene Interval_121593 chr5 3709980 3710622 + 0 NA intron (ENSMUSG00000040351.11, intron 11 of 18) protein_coding-intron (ENSMUSG00000040351.11, intron 11 of 19) 14337 ENSMUSG00000092698.1 ENSMUSG00000092698 ENSMUST00000174957 Gm22926 miRNA Interval_37328 chr12 65141052 65141930 + 0 NA intron (ENSMUSG00000047534.17, intron 8 of 12) protein_coding-intron (ENSMUSG00000047534.17, intron 9 of 13) 31107 ENSMUSG00000047534.17 ENSMUSG00000047534 ENSMUST00000131753 Mis18bp1 protein_coding Interval_30007 chr11 88658680 88660424 + 0 NA intron (ENSMUSG00000069769.13, intron 5 of 5) protein_coding-intron (ENSMUSG00000069769.13, intron 5 of 13) -59093 ENSMUSG00000087574.1 ENSMUSG00000087574 ENSMUST00000125967 C030037D09Rik lincRNA Interval_21903 chr11 5087800 5088194 + 0 NA exon (ENSMUSG00000009079.16, exon 5 of 15) protein_coding-exon (ENSMUSG00000009079.16, exon 5 of 15) 11070 ENSMUSG00000009079.16 ENSMUSG00000009079 ENSMUST00000151847 Ewsr1 protein_coding Interval_91088 chr2 34963410 34964065 + 0 NA Intergenic Intergenic 1167 ENSMUSG00000083533.2 ENSMUSG00000083533 ENSMUST00000121107 Gm13450 processed_pseudogene Interval_77121 chr17 86706860 86707072 + 0 NA Intergenic Intergenic -3559 ENSMUSG00000087710.1 ENSMUSG00000087710 ENSMUST00000157085 Gm22235 snRNA Interval_106585 chr3 97535822 97536147 + 0 NA Intergenic Intergenic -73948 ENSMUSG00000105004.1 ENSMUSG00000105004 ENSMUST00000198613 Gm43075 TEC Interval_52945 chr14 52179245 52179851 + 0 NA exon (ENSMUSG00000035726.8, exon 8 of 26) protein_coding-exon (ENSMUSG00000035726.8, exon 8 of 26) -16418 ENSMUSG00000035726.8 ENSMUSG00000035726 ENSMUST00000227577 Supt16 protein_coding Interval_65486 chr16 22663756 22663977 + 0 NA Intergenic Intergenic -6677 ENSMUSG00000022861.17 ENSMUSG00000022861 ENSMUST00000231249 Dgkg protein_coding Interval_113657 chr4 57299753 57302175 + 0 NA promoter-TSS (ENSMUSG00000038764.14) protein_coding-promoter-TSS (ENSMUSG00000038764.14) -589 ENSMUSG00000038764.14 ENSMUSG00000038764 ENSMUST00000151964 Ptpn3 protein_coding Interval_105920 chr3 90098574 90100366 + 0 NA TTS (ENSMUSG00000027940.18) protein_coding-TTS (ENSMUSG00000027940.18) -4664 ENSMUSG00000027939.11 ENSMUSG00000027939 ENSMUST00000200410 Nup210l protein_coding Interval_46977 chr13 73907604 73908743 + 0 NA Intergenic Intergenic 16537 ENSMUSG00000095943.1 ENSMUSG00000095943 ENSMUST00000175516 Gm25197 miRNA Interval_85117 chr19 22993477 22994145 + 0 NA exon (ENSMUSG00000052387.16, exon 25 of 25) protein_coding-exon (ENSMUSG00000052387.16, exon 25 of 25) -67643 ENSMUSG00000118155.1 ENSMUSG00000118155 ENSMUST00000235686 Gm50136 lincRNA Interval_75193 chr17 64538274 64538922 + 0 NA intron (ENSMUSG00000073377.9, intron 1 of 2) lincRNA-intron (ENSMUSG00000073377.9, intron 1 of 3) 17062 ENSMUSG00000073377.9 ENSMUSG00000073377 ENSMUST00000168379 AU016765 lincRNA Interval_76909 chr17 84911238 84911570 + 0 NA Intergenic Intergenic -8835 ENSMUSG00000117451.1 ENSMUSG00000117451 ENSMUST00000234338 Gm49982 processed_pseudogene Interval_141492 chr6 128602375 128602676 + 0 NA Intergenic Intergenic -14500 ENSMUSG00000107503.1 ENSMUSG00000107503 ENSMUST00000203539 Gm44009 lincRNA Interval_122119 chr5 17422037 17422278 + 0 NA Intergenic Intergenic 41584 ENSMUSG00000090750.1 ENSMUSG00000090750 ENSMUST00000165985 Gm21999 unprocessed_pseudogene Interval_142756 chr6 145366425 145366634 + 0 NA promoter-TSS (ENSMUSG00000088362.1) snoRNA-promoter-TSS (ENSMUSG00000088362.1) -329 ENSMUSG00000088362.1 ENSMUSG00000088362 ENSMUST00000157737 Gm23498 snoRNA Interval_62122 chr15 87456070 87456368 + 0 NA Intergenic Intergenic -88080 ENSMUSG00000054863.9 ENSMUSG00000054863 ENSMUST00000068088 Tafa5 protein_coding Interval_17887 chr10 80602596 80603504 + 0 NA promoter-TSS (ENSMUSG00000113949.1) protein_coding-promoter-TSS (ENSMUSG00000113949.1) 154 ENSMUSG00000113640.1 ENSMUSG00000113640 ENSMUST00000221670 Adat3 protein_coding Interval_150887 chr7 116184501 116184977 + 0 NA promoter-TSS (ENSMUSG00000045659.18) protein_coding-promoter-TSS (ENSMUSG00000045659.18) -55214 ENSMUSG00000045659.18 ENSMUSG00000045659 ENSMUST00000205446 Plekha7 protein_coding Interval_138182 chr6 85977201 85977467 + 0 NA intron (ENSMUSG00000107230.1, intron 2 of 2) antisense-intron (ENSMUSG00000107230.1, intron 2 of 2) -15692 ENSMUSG00000030002.15 ENSMUSG00000030002 ENSMUST00000202379 Dusp11 protein_coding Interval_57199 chr15 7460120 7460549 + 0 NA Intergenic Intergenic 62437 ENSMUSG00000090199.1 ENSMUSG00000090199 ENSMUST00000161643 Gm16029 antisense Interval_15891 chr10 58907788 58909160 + 0 NA intron (ENSMUSG00000037990.18, intron 1 of 9) protein_coding-intron (ENSMUSG00000037990.18, intron 1 of 2) -57069 ENSMUSG00000098653.1 ENSMUSG00000098653 ENSMUST00000183751 Gm27672 miRNA Interval_22692 chr11 13118051 13118795 + 0 NA Intergenic Intergenic 120757 ENSMUSG00000084055.1 ENSMUSG00000084055 ENSMUST00000117869 Gm12004 processed_pseudogene Interval_37657 chr12 70880527 70881948 + 0 NA intron (ENSMUSG00000048285.9, intron 6 of 11) protein_coding-intron (ENSMUSG00000048285.9, intron 6 of 13) 30914 ENSMUSG00000113584.1 ENSMUSG00000113584 ENSMUST00000221434 Gm46355 lincRNA Interval_27162 chr11 63545594 63545888 + 0 NA Intergenic Intergenic 55182 ENSMUSG00000082256.1 ENSMUSG00000082256 ENSMUST00000119770 Gm12287 processed_pseudogene Interval_152708 chr7 136666383 136667602 + 0 NA TTS (ENSMUSG00000110101.1) lincRNA-TTS (ENSMUSG00000110101.1) 9783 ENSMUSG00000109894.1 ENSMUSG00000109894 ENSMUST00000210286 Gm5904 processed_pseudogene Interval_144808 chr7 28375307 28376077 + 0 NA Intergenic Intergenic -3288 ENSMUSG00000109455.1 ENSMUSG00000109455 ENSMUST00000208885 Gm44710 antisense Interval_95473 chr2 109917164 109919066 + 0 NA exon (ENSMUSG00000050199.13, exon 1 of 18) protein_coding-exon (ENSMUSG00000050199.13, exon 1 of 18) -4796 ENSMUSG00000063751.6 ENSMUSG00000063751 ENSMUST00000146110 Platr8 processed_transcript Interval_80555 chr18 44061564 44061755 + 0 NA promoter-TSS (ENSMUSG00000118199.1) processed_pseudogene-promoter-TSS (ENSMUSG00000118199.1) 61 ENSMUSG00000118199.1 ENSMUSG00000118199 ENSMUST00000237259 Gm8390 processed_pseudogene Interval_21225 chr10 127304720 127306085 + 0 NA intron (ENSMUSG00000040354.14, intron 9 of 21) protein_coding-intron (ENSMUSG00000040354.14, intron 9 of 20) 6384 ENSMUSG00000040354.14 ENSMUSG00000040354 ENSMUST00000128369 Mars1 protein_coding Interval_92367 chr2 59295688 59296106 + 0 NA intron (ENSMUSG00000026991.20, intron 3 of 4) protein_coding-intron (ENSMUSG00000026991.20, intron 4 of 21) 91574 ENSMUSG00000087455.7 ENSMUSG00000087455 ENSMUST00000155111 5330411J11Rik processed_transcript Interval_150592 chr7 112690599 112692330 + 0 NA promoter-TSS (ENSMUSG00000055320.18) protein_coding-promoter-TSS (ENSMUSG00000055320.18) -11383 ENSMUSG00000085945.3 ENSMUSG00000085945 ENSMUST00000211302 2310014F06Rik bidirectional_promoter_lncRNA Interval_172689 chrX 42360797 42361059 + 0 NA Intergenic Intergenic 13416 ENSMUSG00000083450.1 ENSMUSG00000083450 ENSMUST00000120480 Gm14619 processed_pseudogene Interval_54286 chr14 67169393 67170573 + 0 NA intron (ENSMUSG00000114697.1, intron 1 of 6) lincRNA-intron (ENSMUSG00000114697.1, intron 1 of 6) 395 ENSMUSG00000114697.1 ENSMUSG00000114697 ENSMUST00000225163 Gm30806 lincRNA Interval_100675 chr2 171242333 171242851 + 0 NA intron (ENSMUSG00000084829.7, intron 1 of 3) lincRNA-intron (ENSMUSG00000084829.7, intron 1 of 3) 8583 ENSMUSG00000086613.1 ENSMUSG00000086613 ENSMUST00000129075 1700007M16Rik lincRNA Interval_19062 chr10 94139430 94140127 + 0 NA TTS (ENSMUSG00000020021.4) protein_coding-TTS (ENSMUSG00000020021.4) -8245 ENSMUSG00000005897.14 ENSMUSG00000005897 ENSMUST00000099343 Nr2c1 protein_coding Interval_7834 chr1 134045883 134046665 + 0 NA intron (ENSMUSG00000041559.7, intron 2 of 2) protein_coding-intron (ENSMUSG00000041559.7, intron 2 of 2) 8778 ENSMUSG00000041559.7 ENSMUSG00000041559 ENSMUST00000162779 Fmod protein_coding Interval_39032 chr12 84577146 84577390 + 0 NA intron (ENSMUSG00000021239.12, intron 3 of 4) protein_coding-intron (ENSMUSG00000021239.12, intron 3 of 4) 7428 ENSMUSG00000021239.12 ENSMUSG00000021239 ENSMUST00000169934 Vsx2 protein_coding Interval_135731 chr6 45623940 45624175 + 0 NA intron (ENSMUSG00000039419.17, intron 2 of 3) protein_coding-intron (ENSMUSG00000039419.17, intron 1 of 23) 94974 ENSMUSG00000108055.1 ENSMUSG00000108055 ENSMUST00000203831 Gm43876 TEC Interval_14027 chr10 25677925 25678157 + 0 NA Intergenic Intergenic 29902 ENSMUSG00000112803.1 ENSMUSG00000112803 ENSMUST00000217933 Gm36543 lincRNA Interval_12037 chr1 189001942 189002398 + 0 NA intron (ENSMUSG00000026608.13, intron 1 of 12) protein_coding-intron (ENSMUSG00000026608.13, intron 1 of 17) 5671 ENSMUSG00000026608.13 ENSMUSG00000026608 ENSMUST00000193273 Kctd3 protein_coding Interval_62769 chr15 96744242 96744948 + 0 NA Intergenic Intergenic 22483 ENSMUSG00000095638.2 ENSMUSG00000095638 ENSMUST00000177677 Gm8888 processed_pseudogene Interval_161350 chr8 119897739 119898457 + 0 NA Intergenic Intergenic -12743 ENSMUSG00000092329.1 ENSMUSG00000092329 ENSMUST00000127664 Galnt2l protein_coding Interval_131337 chr5 136554689 136554946 + 0 NA intron (ENSMUSG00000029705.17, intron 1 of 1) protein_coding-intron (ENSMUSG00000029705.17, intron 1 of 23) 12673 ENSMUSG00000029705.17 ENSMUSG00000029705 ENSMUST00000177305 Cux1 protein_coding Interval_99507 chr2 162786544 162786868 + 0 NA Intergenic Intergenic -18884 ENSMUSG00000082296.1 ENSMUSG00000082296 ENSMUST00000121144 Gm11450 processed_pseudogene Interval_32796 chr11 110755903 110756116 + 0 NA Intergenic Intergenic 211502 ENSMUSG00000085985.1 ENSMUSG00000085985 ENSMUST00000144689 Gm11682 lincRNA Interval_55608 chr14 95612173 95612458 + 0 NA Intergenic Intergenic 117665 ENSMUSG00000115679.1 ENSMUSG00000115679 ENSMUST00000228033 Gm48995 processed_pseudogene Interval_21699 chr11 3777027 3777239 + 0 NA intron (ENSMUSG00000020435.17, intron 2 of 2) protein_coding-intron (ENSMUSG00000020435.17, intron 2 of 13) -2401 ENSMUSG00000020435.17 ENSMUSG00000020435 ENSMUST00000135250 Osbp2 protein_coding Interval_106716 chr3 99500295 99500793 + 0 NA promoter-TSS (ENSMUSG00000080832.4) processed_pseudogene-promoter-TSS (ENSMUSG00000080832.4) -6 ENSMUSG00000080832.4 ENSMUSG00000080832 ENSMUST00000120481 M6pr-ps processed_pseudogene Interval_89666 chr2 24384963 24386572 + 0 NA promoter-TSS (ENSMUSG00000026979.16) protein_coding-promoter-TSS (ENSMUSG00000026979.16) -850 ENSMUSG00000026979.16 ENSMUSG00000026979 ENSMUST00000132924 Psd4 protein_coding Interval_141154 chr6 125304530 125305185 + 0 NA Intergenic Intergenic 4708 ENSMUSG00000030339.7 ENSMUSG00000030339 ENSMUST00000160901 Ltbr protein_coding Interval_146157 chr7 44405382 44406366 + 0 NA Intergenic Intergenic 19474 ENSMUSG00000108372.1 ENSMUSG00000108372 ENSMUST00000206723 Gm45124 TEC Interval_110523 chr4 3559048 3559283 + 0 NA intron (ENSMUSG00000028232.13, intron 6 of 8) protein_coding-intron (ENSMUSG00000028232.13, intron 5 of 7) 15644 ENSMUSG00000028232.13 ENSMUSG00000028232 ENSMUST00000134451 Tmem68 protein_coding Interval_139608 chr6 102746357 102746872 + 0 NA Intergenic Intergenic -47770 ENSMUSG00000098533.1 ENSMUSG00000098533 ENSMUST00000183546 Mir6373 miRNA Interval_124294 chr5 43692401 43692794 + 0 NA intron (ENSMUSG00000039765.15, intron 9 of 33) protein_coding-intron (ENSMUSG00000039765.15, intron 12 of 39) 20308 ENSMUSG00000039765.15 ENSMUSG00000039765 ENSMUST00000127355 Cc2d2a protein_coding Interval_82628 chr18 75514749 75515035 + 0 NA intron (ENSMUSG00000097712.1, intron 1 of 3) protein_coding-intron (ENSMUSG00000052928.9, intron 9 of 11) 247 ENSMUSG00000097712.1 ENSMUSG00000097712 ENSMUST00000181913 Gm10532 antisense Interval_64360 chr16 10813960 10814353 + 0 NA Intergenic Intergenic 1241 ENSMUSG00000079740.1 ENSMUSG00000079740 ENSMUST00000115822 Gm11172 protein_coding Interval_26127 chr11 54641777 54641989 + 0 NA intron (ENSMUSG00000037533.20, intron 5 of 17) protein_coding-intron (ENSMUSG00000037533.20, intron 7 of 16) 15544 ENSMUSG00000037533.20 ENSMUSG00000037533 ENSMUST00000136494 Rapgef6 protein_coding Interval_145831 chr7 39728947 39729169 + 0 NA Intergenic Intergenic 11471 ENSMUSG00000101901.1 ENSMUSG00000101901 ENSMUST00000188228 Gm9230 processed_pseudogene Interval_109105 chr3 135825262 135826840 + 0 NA promoter-TSS (ENSMUSG00000053897.15) protein_coding-promoter-TSS (ENSMUSG00000053897.15) 394 ENSMUSG00000053897.15 ENSMUSG00000053897 ENSMUST00000133810 Slc39a8 protein_coding Interval_96554 chr2 125649046 125649444 + 0 NA exon (ENSMUSG00000035109.14, exon 10 of 12) protein_coding-exon (ENSMUSG00000035109.14, exon 10 of 12) -23850 ENSMUSG00000091337.3 ENSMUSG00000091337 ENSMUST00000164756 Eid1 protein_coding Interval_44429 chr13 44783277 44783700 + 0 NA intron (ENSMUSG00000038518.15, intron 2 of 4) protein_coding-intron (ENSMUSG00000038518.15, intron 2 of 18) 52118 ENSMUSG00000038518.15 ENSMUSG00000038518 ENSMUST00000173003 Jarid2 protein_coding Interval_1945 chr1 34838039 34838444 + 0 NA intron (ENSMUSG00000037503.12, intron 1 of 6) protein_coding-intron (ENSMUSG00000037503.12, intron 1 of 6) 4793 ENSMUSG00000037503.12 ENSMUSG00000037503 ENSMUST00000140534 Fam168b protein_coding Interval_10698 chr1 173323747 173324028 + 0 NA Intergenic Intergenic 9863 ENSMUSG00000037872.5 ENSMUSG00000037872 ENSMUST00000194046 Ackr1 protein_coding Interval_172723 chrX 47944700 47945395 + 0 NA intron (ENSMUSG00000001173.15, intron 4 of 6) protein_coding-intron (ENSMUSG00000001173.15, intron 15 of 23) 6656 ENSMUSG00000001173.15 ENSMUSG00000001173 ENSMUST00000115013 Ocrl protein_coding Interval_81921 chr18 65890409 65890977 + 0 NA intron (ENSMUSG00000118170.1, intron 1 of 3) antisense-intron (ENSMUSG00000118170.1, intron 1 of 3) 4062 ENSMUSG00000118170.1 ENSMUSG00000118170 ENSMUST00000237028 Gm30094 antisense Interval_835 chr1 12296170 12296673 + 0 NA Intergenic Intergenic -78515 ENSMUSG00000093864.1 ENSMUSG00000093864 ENSMUST00000179834 Gm22633 snRNA Interval_21939 chr11 5317780 5318811 + 0 NA intron (ENSMUSG00000041961.14, intron 3 of 8) protein_coding-intron (ENSMUSG00000041961.14, intron 2 of 8) 44210 ENSMUSG00000118486.1 ENSMUSG00000118486 ENSMUST00000238466 Gm30172 unitary_pseudogene Interval_135302 chr6 38177307 38178046 + 0 NA exon (ENSMUSG00000063455.16, exon 8 of 20) protein_coding-exon (ENSMUSG00000063455.16, exon 8 of 20) 59293 ENSMUSG00000087924.1 ENSMUSG00000087924 ENSMUST00000157299 Gm23231 snRNA Interval_30112 chr11 89284095 89284295 + 0 NA Intergenic Intergenic 18137 ENSMUSG00000048616.4 ENSMUSG00000048616 ENSMUST00000061728 Nog protein_coding Interval_158568 chr8 84553998 84554747 + 0 NA TTS (ENSMUSG00000034656.18) protein_coding-TTS (ENSMUSG00000034656.18) 62812 ENSMUSG00000086067.1 ENSMUSG00000086067 ENSMUST00000127527 Gm16183 antisense Interval_23864 chr11 27258012 27259337 + 0 NA Intergenic Intergenic 60304 ENSMUSG00000088438.1 ENSMUSG00000088438 ENSMUST00000157813 Gm25387 snoRNA Interval_107857 chr3 116331962 116332262 + 0 NA intron (ENSMUSG00000033502.15, intron 8 of 14) protein_coding-intron (ENSMUSG00000033502.15, intron 8 of 15) -17991 ENSMUSG00000106005.1 ENSMUSG00000106005 ENSMUST00000196669 Gm29151 antisense Interval_153944 chr8 11419448 11419918 + 0 NA intron (ENSMUSG00000031503.13, intron 10 of 11) protein_coding-intron (ENSMUSG00000031503.13, intron 20 of 47) -1791 ENSMUSG00000084783.1 ENSMUSG00000084783 ENSMUST00000148654 Gm15419 antisense Interval_48108 chr13 96146329 96146542 + 0 NA Intergenic Intergenic 13066 ENSMUSG00000100475.1 ENSMUSG00000100475 ENSMUST00000188138 Gm29543 lincRNA Interval_123957 chr5 36867845 36870811 + 0 NA intron (ENSMUSG00000029120.10, intron 1 of 3) protein_coding-intron (ENSMUSG00000029120.10, intron 1 of 8) 665 ENSMUSG00000029120.10 ENSMUSG00000029120 ENSMUST00000138124 Ppp2r2c protein_coding Interval_118352 chr4 130836269 130836579 + 0 NA Intergenic Intergenic -10111 ENSMUSG00000097224.1 ENSMUSG00000097224 ENSMUST00000181227 Gm26716 antisense Interval_58788 chr15 38072308 38073084 + 0 NA intron (ENSMUSG00000037487.7, intron 1 of 58) protein_coding-intron (ENSMUSG00000037487.7, intron 1 of 58) -6406 ENSMUSG00000115771.1 ENSMUSG00000115771 ENSMUST00000228698 Gm49312 bidirectional_promoter_lncRNA Interval_26698 chr11 59800269 59801280 + 0 NA intron (ENSMUSG00000032633.12, intron 6 of 12) protein_coding-intron (ENSMUSG00000032633.12, intron 6 of 12) 8937 ENSMUSG00000032633.12 ENSMUSG00000032633 ENSMUST00000151453 Flcn protein_coding Interval_163268 chr9 20437728 20438095 + 0 NA TTS (ENSMUSG00000063108.15) protein_coding-TTS (ENSMUSG00000063108.15) 19260 ENSMUSG00000111626.1 ENSMUSG00000111626 ENSMUST00000215252 Gm48738 processed_pseudogene Interval_96568 chr2 125793188 125793594 + 0 NA Intergenic Intergenic -33077 ENSMUSG00000035093.16 ENSMUSG00000035093 ENSMUST00000136450 Secisbp2l protein_coding Interval_80796 chr18 47246349 47246576 + 0 NA TTS (ENSMUSG00000019647.16) protein_coding-TTS (ENSMUSG00000019647.16) 86886 ENSMUSG00000019647.16 ENSMUSG00000019647 ENSMUST00000144223 Sema6a protein_coding Interval_67367 chr16 48083804 48083986 + 0 NA Intergenic Intergenic 10898 ENSMUSG00000067716.3 ENSMUSG00000067716 ENSMUST00000088296 Gm7275 processed_pseudogene Interval_5836 chr1 92365465 92366299 + 0 NA Intergenic Intergenic 41372 ENSMUSG00000101265.1 ENSMUSG00000101265 ENSMUST00000187370 Gm29099 lincRNA Interval_118677 chr4 133147320 133148415 + 0 NA intron (ENSMUSG00000028868.13, intron 1 of 8) protein_coding-intron (ENSMUSG00000028868.13, intron 1 of 8) 17327 ENSMUSG00000028868.13 ENSMUSG00000028868 ENSMUST00000136637 Wasf2 protein_coding Interval_71148 chr17 20178965 20179224 + 0 NA Intergenic Intergenic 4003 ENSMUSG00000071275.1 ENSMUSG00000071275 ENSMUST00000095636 Fpr-rs6 protein_coding Interval_72219 chr17 28646066 28646720 + 0 NA intron (ENSMUSG00000036196.16, intron 14 of 17) protein_coding-intron (ENSMUSG00000036196.16, intron 16 of 19) -23910 ENSMUSG00000004865.16 ENSMUSG00000004865 ENSMUST00000114767 Srpk1 protein_coding Interval_174125 chrX 135838568 135840246 + 0 NA promoter-TSS (ENSMUSG00000072966.11) protein_coding-promoter-TSS (ENSMUSG00000072966.11) 373 ENSMUSG00000072966.11 ENSMUSG00000072966 ENSMUST00000138251 Gprasp2 protein_coding Interval_46750 chr13 69914322 69914633 + 0 NA Intergenic Intergenic -45356 ENSMUSG00000113802.1 ENSMUSG00000113802 ENSMUST00000220972 4933416O17Rik lincRNA Interval_56676 chr14 121315540 121317646 + 0 NA intron (ENSMUSG00000063410.8, intron 2 of 4) protein_coding-intron (ENSMUSG00000063410.8, intron 2 of 10) 63418 ENSMUSG00000063410.8 ENSMUSG00000063410 ENSMUST00000226158 Stk24 protein_coding Interval_127152 chr5 100657940 100658965 + 0 NA intron (ENSMUSG00000029319.8, intron 4 of 5) protein_coding-intron (ENSMUSG00000029319.8, intron 5 of 6) 5967 ENSMUSG00000029319.8 ENSMUSG00000029319 ENSMUST00000127811 Coq2 protein_coding Interval_28128 chr11 73030794 73031325 + 0 NA intron (ENSMUSG00000020785.17, intron 9 of 14) protein_coding-intron (ENSMUSG00000020785.17, intron 9 of 15) 12051 ENSMUSG00000020785.17 ENSMUSG00000020785 ENSMUST00000145834 Camkk1 protein_coding Interval_73397 chr17 36972476 36974070 + 0 NA Intergenic Intergenic -1877 ENSMUSG00000083534.1 ENSMUSG00000083534 ENSMUST00000119193 H2-M6-ps unprocessed_pseudogene Interval_148876 chr7 89560927 89561375 + 0 NA intron (ENSMUSG00000108875.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000108875.1, intron 1 of 1) 8785 ENSMUSG00000108875.1 ENSMUSG00000108875 ENSMUST00000208619 Gm45064 lincRNA Interval_69031 chr16 90219261 90221409 + 0 NA promoter-TSS (ENSMUSG00000022982.10) protein_coding-promoter-TSS (ENSMUSG00000022982.10) -419 ENSMUSG00000022982.10 ENSMUSG00000022982 ENSMUST00000232505 Sod1 protein_coding Interval_137787 chr6 82491233 82491519 + 0 NA intron (ENSMUSG00000030043.11, intron 1 of 4) protein_coding-intron (ENSMUSG00000030043.11, intron 2 of 5) 89042 ENSMUSG00000030043.11 ENSMUSG00000030043 ENSMUST00000203775 Tacr1 protein_coding Interval_158842 chr8 87152626 87152822 + 0 NA intron (ENSMUSG00000098684.1, intron 3 of 7) lincRNA-intron (ENSMUSG00000098684.1, intron 3 of 7) 38079 ENSMUSG00000098684.1 ENSMUSG00000098684 ENSMUST00000183611 Gm27246 lincRNA Interval_99959 chr2 166111730 166112419 + 0 NA intron (ENSMUSG00000006800.14, intron 4 of 21) protein_coding-intron (ENSMUSG00000006800.14, intron 3 of 20) 43589 ENSMUSG00000006800.14 ENSMUSG00000006800 ENSMUST00000133395 Sulf2 protein_coding Interval_143971 chr7 18697649 18697925 + 0 NA Intergenic Intergenic -6635 ENSMUSG00000109571.1 ENSMUSG00000109571 ENSMUST00000207768 Gm44655 unprocessed_pseudogene Interval_150149 chr7 107393811 107394398 + 0 NA intron (ENSMUSG00000062542.11, intron 1 of 1) protein_coding-intron (ENSMUSG00000062542.11, intron 1 of 6) 28032 ENSMUSG00000109078.1 ENSMUSG00000109078 ENSMUST00000208516 Gm19033 processed_pseudogene Interval_95791 chr2 116357889 116359092 + 0 NA Intergenic Intergenic 170000 ENSMUSG00000081787.1 ENSMUSG00000081787 ENSMUST00000120190 Gm13991 processed_pseudogene Interval_77833 chr18 4311303 4311559 + 0 NA Intergenic Intergenic -16949 ENSMUSG00000117482.1 ENSMUSG00000117482 ENSMUST00000234061 Gm7400 processed_pseudogene Interval_88548 chr2 6043531 6043742 + 0 NA intron (ENSMUSG00000043241.14, intron 7 of 10) protein_coding-intron (ENSMUSG00000043241.14, intron 18 of 21) -6791 ENSMUSG00000043241.14 ENSMUSG00000043241 ENSMUST00000144901 Upf2 protein_coding Interval_164723 chr9 40811821 40812484 + 0 NA Intergenic Intergenic 7404 ENSMUSG00000064791.1 ENSMUSG00000064791 ENSMUST00000082857 Snord14e snoRNA Interval_60 GL456212.1 112432 113073 + 0 NA NA NA NA NA Interval_140830 chr6 121975106 121975505 + 0 NA Intergenic Intergenic -31456 ENSMUSG00000030131.8 ENSMUSG00000030131 ENSMUST00000081777 Mug2 protein_coding Interval_44476 chr13 45196406 45196628 + 0 NA Intergenic Intergenic -8981 ENSMUSG00000098136.1 ENSMUSG00000098136 ENSMUST00000182830 Gm8513 processed_pseudogene Interval_117047 chr4 119217900 119218581 + 0 NA promoter-TSS (ENSMUSG00000028642.7) protein_coding-promoter-TSS (ENSMUSG00000028642.7) -23 ENSMUSG00000028642.7 ENSMUSG00000028642 ENSMUST00000030394 Tmem269 protein_coding Interval_75236 chr17 65071069 65071553 + 0 NA Intergenic Intergenic 97892 ENSMUSG00000117336.1 ENSMUSG00000117336 ENSMUST00000233948 Gm49865 processed_pseudogene Interval_132313 chr5 144103360 144103687 + 0 NA intron (ENSMUSG00000038970.7, intron 1 of 13) protein_coding-intron (ENSMUSG00000038970.7, intron 1 of 13) 3087 ENSMUSG00000038970.7 ENSMUSG00000038970 ENSMUST00000041804 Lmtk2 protein_coding Interval_85291 chr19 24432087 24432405 + 0 NA intron (ENSMUSG00000024867.14, intron 3 of 3) protein_coding-intron (ENSMUSG00000024867.14, intron 3 of 14) 16237 ENSMUSG00000085003.1 ENSMUSG00000085003 ENSMUST00000126936 Pip5k1bos antisense Interval_91738 chr2 48959824 48960160 + 0 NA intron (ENSMUSG00000036792.12, intron 2 of 14) protein_coding-intron (ENSMUSG00000036792.12, intron 1 of 10) -49979 ENSMUSG00000026761.12 ENSMUSG00000026761 ENSMUST00000123271 Orc4 protein_coding Interval_171958 chr9 122950409 122951561 + 0 NA promoter-TSS (ENSMUSG00000032551.7) protein_coding-promoter-TSS (ENSMUSG00000032551.7) -9 ENSMUSG00000032551.7 ENSMUSG00000032551 ENSMUST00000215129 1110059G10Rik protein_coding Interval_72213 chr17 28609090 28610120 + 0 NA intron (ENSMUSG00000004865.16, intron 2 of 14) protein_coding-intron (ENSMUSG00000004865.16, intron 2 of 15) 12878 ENSMUSG00000004865.16 ENSMUSG00000004865 ENSMUST00000114767 Srpk1 protein_coding Interval_5933 chr1 93305330 93306208 + 0 NA promoter-TSS (ENSMUSG00000026273.13) protein_coding-promoter-TSS (ENSMUSG00000026273.13) 110 ENSMUSG00000026273.13 ENSMUSG00000026273 ENSMUST00000152307 Mterf4 protein_coding Interval_132375 chr5 144556213 144556819 + 0 NA exon (ENSMUSG00000059991.7, exon 5 of 5) protein_coding-exon (ENSMUSG00000059991.7, exon 5 of 5) 10614 ENSMUSG00000059991.7 ENSMUSG00000059991 ENSMUST00000071782 Nptx2 protein_coding Interval_15444 chr10 46733655 46734769 + 0 NA Intergenic Intergenic 64068 ENSMUSG00000111754.1 ENSMUSG00000111754 ENSMUST00000217086 Gm19994 processed_pseudogene Interval_106981 chr3 102435546 102436719 + 0 NA intron (ENSMUSG00000105891.4, intron 3 of 4) lincRNA-intron (ENSMUSG00000105891.4, intron 3 of 4) -46125 ENSMUSG00000106459.1 ENSMUSG00000106459 ENSMUST00000197603 Gm43245 processed_pseudogene Interval_73165 chr17 35204409 35205615 + 0 NA promoter-TSS (ENSMUSG00000099006.1) miRNA-promoter-TSS (ENSMUSG00000099006.1) 339 ENSMUSG00000024402.5 ENSMUSG00000024402 ENSMUST00000025266 Lta protein_coding Interval_76210 chr17 77281941 77282194 + 0 NA Intergenic Intergenic 81143 ENSMUSG00000117578.1 ENSMUSG00000117578 ENSMUST00000234215 Rpsa-ps8 processed_pseudogene Interval_40667 chr12 106658172 106659336 + 0 NA Intergenic Intergenic 57608 ENSMUSG00000085820.7 ENSMUSG00000085820 ENSMUST00000149382 4933406K04Rik lincRNA Interval_161631 chr8 121675596 121676409 + 0 NA intron (ENSMUSG00000092329.1, intron 1 of 15) protein_coding-intron (ENSMUSG00000092329.1, intron 1 of 15) -1914 ENSMUSG00000110673.1 ENSMUSG00000110673 ENSMUST00000211931 Gm45833 lincRNA Interval_85699 chr19 29750085 29750288 + 0 NA intron (ENSMUSG00000046138.15, intron 2 of 6) protein_coding-intron (ENSMUSG00000046138.15, intron 3 of 7) 52252 ENSMUSG00000024806.4 ENSMUSG00000024806 ENSMUST00000235954 Mlana protein_coding Interval_65271 chr16 21163198 21164227 + 0 NA Intergenic Intergenic -9712 ENSMUSG00000090356.2 ENSMUSG00000090356 ENSMUST00000170665 Teddm3 protein_coding Interval_5132 chr1 85914360 85915182 + 0 NA Intergenic Intergenic -14115 ENSMUSG00000026224.11 ENSMUSG00000026224 ENSMUST00000188949 4933407L21Rik protein_coding Interval_174380 chrX 150956497 150957365 + 0 NA Intergenic Intergenic -30772 ENSMUSG00000081194.1 ENSMUSG00000081194 ENSMUST00000117716 Gm8424 processed_pseudogene Interval_144180 chr7 19826042 19827283 + 0 NA Intergenic Intergenic 10109 ENSMUSG00000087593.1 ENSMUSG00000087593 ENSMUST00000137373 Gm16174 antisense Interval_46764 chr13 70061230 70061720 + 0 NA promoter-TSS (ENSMUSG00000112998.1) TEC-promoter-TSS (ENSMUSG00000112998.1) -83 ENSMUSG00000112998.1 ENSMUSG00000112998 ENSMUST00000221477 Gm47656 TEC Interval_132845 chr5 148279214 148279643 + 0 NA intron (ENSMUSG00000029651.16, intron 2 of 8) protein_coding-intron (ENSMUSG00000029651.16, intron 2 of 6) 43436 ENSMUSG00000029651.16 ENSMUSG00000029651 ENSMUST00000085554 Mtus2 protein_coding Interval_66522 chr16 34748413 34748610 + 0 NA intron (ENSMUSG00000022836.11, intron 1 of 5) protein_coding-intron (ENSMUSG00000022836.11, intron 1 of 5) 57801 ENSMUSG00000022833.7 ENSMUSG00000022833 ENSMUST00000232341 Ccdc14 protein_coding Interval_155111 chr8 26665021 26666254 + 0 NA TTS (ENSMUSG00000109680.1) lincRNA-TTS (ENSMUSG00000109680.1) 2669 ENSMUSG00000109680.1 ENSMUSG00000109680 ENSMUST00000211305 Gm32098 lincRNA Interval_104737 chr3 69935551 69936167 + 0 NA Intergenic Intergenic 19823 ENSMUSG00000103549.1 ENSMUSG00000103549 ENSMUST00000194028 Gm17895 processed_pseudogene Interval_81261 chr18 56864964 56865304 + 0 NA intron (ENSMUSG00000032656.14, intron 1 of 2) protein_coding-intron (ENSMUSG00000032656.14, intron 1 of 4) 50954 ENSMUSG00000117917.1 ENSMUSG00000117917 ENSMUST00000237269 Gm18087 processed_pseudogene Interval_75638 chr17 69604837 69605608 + 0 NA Intergenic Intergenic -10445 ENSMUSG00000088581.1 ENSMUSG00000088581 ENSMUST00000157956 Gm22967 misc_RNA Interval_170304 chr9 106805027 106805518 + 0 NA Intergenic Intergenic 7326 ENSMUSG00000088812.1 ENSMUSG00000088812 ENSMUST00000158187 Gm22384 snRNA Interval_100502 chr2 169704066 169704849 + 0 NA intron (ENSMUSG00000047907.11, intron 1 of 2) protein_coding-intron (ENSMUSG00000047907.11, intron 1 of 1) -76139 ENSMUSG00000103662.1 ENSMUSG00000103662 ENSMUST00000191912 Gm34294 TEC Interval_155307 chr8 31120874 31122637 + 0 NA exon (ENSMUSG00000039328.11, exon 2 of 2) protein_coding-exon (ENSMUSG00000039328.11, exon 2 of 2) 9925 ENSMUSG00000039328.11 ENSMUSG00000039328 ENSMUST00000209547 Rnf122 protein_coding Interval_75760 chr17 71093649 71095104 + 0 NA intron (ENSMUSG00000024049.15, intron 21 of 36) protein_coding-intron (ENSMUSG00000024049.15, intron 21 of 36) -50162 ENSMUSG00000117315.1 ENSMUSG00000117315 ENSMUST00000233463 1600022D10Rik lincRNA Interval_108892 chr3 133053600 133053864 + 0 NA exon (ENSMUSG00000105217.1, exon 1 of 1) TEC-exon (ENSMUSG00000105217.1, exon 1 of 1) 538 ENSMUSG00000105217.1 ENSMUSG00000105217 ENSMUST00000196110 Gm42873 TEC Interval_172635 chrX 38651210 38652094 + 0 NA Intergenic Intergenic -16565 ENSMUSG00000048970.9 ENSMUSG00000048970 ENSMUST00000058265 C1galt1c1 protein_coding Interval_55156 chr14 78710487 78710762 + 0 NA intron (ENSMUSG00000034731.11, intron 2 of 29) protein_coding-intron (ENSMUSG00000034731.11, intron 1 of 28) 6814 ENSMUSG00000115107.1 ENSMUSG00000115107 ENSMUST00000228480 Gm18368 processed_pseudogene Interval_120291 chr4 145224875 145225453 + 0 NA TTS (ENSMUSG00000028599.10) protein_coding-TTS (ENSMUSG00000028599.10) 21706 ENSMUSG00000028599.10 ENSMUSG00000028599 ENSMUST00000143055 Tnfrsf1b protein_coding Interval_54658 chr14 72983281 72983740 + 0 NA Intergenic Intergenic -3606 ENSMUSG00000115085.1 ENSMUSG00000115085 ENSMUST00000226196 Gm9198 processed_pseudogene Interval_163728 chr9 24952445 24953347 + 0 NA promoter-TSS (ENSMUSG00000110872.1) processed_pseudogene-promoter-TSS (ENSMUSG00000110872.1) -77 ENSMUSG00000110872.1 ENSMUSG00000110872 ENSMUST00000217324 Gm48255 processed_pseudogene Interval_77755 chr18 3227425 3227711 + 0 NA Intergenic Intergenic -55636 ENSMUSG00000117464.1 ENSMUSG00000117464 ENSMUST00000234747 Gm50075 processed_pseudogene Interval_115600 chr4 101300107 101301529 + 0 NA intron (ENSMUSG00000085721.1, intron 2 of 2) lincRNA-intron (ENSMUSG00000085721.1, intron 2 of 2) 16597 ENSMUSG00000085863.1 ENSMUSG00000085863 ENSMUST00000153228 Gm12801 lincRNA Interval_127753 chr5 107374849 107375187 + 0 NA intron (ENSMUSG00000029279.15, intron 3 of 5) protein_coding-intron (ENSMUSG00000029279.15, intron 15 of 18) 6999 ENSMUSG00000081798.1 ENSMUSG00000081798 ENSMUST00000120842 Gm8152 processed_pseudogene Interval_14436 chr10 33704516 33704817 + 0 NA Intergenic Intergenic -10226 ENSMUSG00000112656.1 ENSMUSG00000112656 ENSMUST00000217937 Gm47929 unprocessed_pseudogene Interval_36407 chr12 43920132 43921628 + 0 NA Intergenic Intergenic 40217 ENSMUSG00000111960.1 ENSMUSG00000111960 ENSMUST00000219678 Gm46349 lincRNA Interval_168657 chr9 85551979 85552199 + 0 NA intron (ENSMUSG00000110956.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000110956.1, intron 1 of 2) 1676 ENSMUSG00000110956.1 ENSMUSG00000110956 ENSMUST00000216435 Gm48834 lincRNA Interval_26233 chr11 55336286 55336527 + 0 NA intron (ENSMUSG00000055333.14, intron 1 of 23) protein_coding-intron (ENSMUSG00000055333.14, intron 1 of 23) -24149 ENSMUSG00000055333.14 ENSMUSG00000055333 ENSMUST00000108864 Fat2 protein_coding Interval_65161 chr16 20281079 20281382 + 0 NA intron (ENSMUSG00000033918.16, intron 6 of 6) protein_coding-intron (ENSMUSG00000033918.16, intron 9 of 9) 21149 ENSMUSG00000033918.16 ENSMUSG00000033918 ENSMUST00000153275 Parl protein_coding Interval_101864 chr3 10248979 10249880 + 0 NA intron (ENSMUSG00000027530.15, intron 3 of 4) protein_coding-intron (ENSMUSG00000027530.15, intron 4 of 5) 4796 ENSMUSG00000027530.15 ENSMUSG00000027530 ENSMUST00000119761 Fabp12 protein_coding Interval_33835 chr11 118881790 118882393 + 0 NA intron (ENSMUSG00000025576.17, intron 1 of 13) protein_coding-intron (ENSMUSG00000025576.17, intron 1 of 14) -14871 ENSMUSG00000084887.1 ENSMUSG00000084887 ENSMUST00000127327 Gm11749 sense_intronic Interval_5093 chr1 84889366 84892207 + 0 NA intron (ENSMUSG00000073633.9, intron 2 of 3) protein_coding-intron (ENSMUSG00000073633.9, intron 2 of 3) 21635 ENSMUSG00000073633.9 ENSMUSG00000073633 ENSMUST00000151737 Fbxo36 protein_coding Interval_87595 chr19 53638004 53638947 + 0 NA intron (ENSMUSG00000024974.10, intron 21 of 28) protein_coding-intron (ENSMUSG00000024974.10, intron 21 of 28) -4883 ENSMUSG00000024974.10 ENSMUSG00000024974 ENSMUST00000171083 Smc3 protein_coding Interval_128902 chr5 115970553 115971448 + 0 NA intron (ENSMUSG00000029516.19, intron 16 of 37) protein_coding-intron (ENSMUSG00000029516.19, intron 25 of 46) -38316 ENSMUSG00000085376.1 ENSMUSG00000085376 ENSMUST00000127049 Gm14508 antisense Interval_126140 chr5 78862296 78862696 + 0 NA Intergenic Intergenic 82637 ENSMUSG00000077178.1 ENSMUSG00000077178 ENSMUST00000103990 Gm25756 snoRNA Interval_34834 chr12 12385807 12386054 + 0 NA intron (ENSMUSG00000114136.1, intron 2 of 4) antisense-intron (ENSMUSG00000114136.1, intron 2 of 4) 6685 ENSMUSG00000114136.1 ENSMUSG00000114136 ENSMUST00000220545 4921511I17Rik antisense Interval_151079 chr7 118366493 118367153 + 0 NA intron (ENSMUSG00000118412.1, intron 1 of 4) unitary_pseudogene-intron (ENSMUSG00000118412.1, intron 1 of 4) 2894 ENSMUSG00000118412.1 ENSMUSG00000118412 ENSMUST00000238497 Gm32766 unitary_pseudogene Interval_163449 chr9 21490635 21491370 + 0 NA intron (ENSMUSG00000033335.17, intron 14 of 20) protein_coding-intron (ENSMUSG00000033335.17, intron 14 of 20) 5562 ENSMUSG00000065547.1 ENSMUSG00000065547 ENSMUST00000083613 Mir199a-1 miRNA Interval_10519 chr1 171439749 171440072 + 0 NA intron (ENSMUSG00000038235.4, intron 1 of 2) protein_coding-intron (ENSMUSG00000038235.4, intron 1 of 9) 20191 ENSMUSG00000103711.1 ENSMUSG00000103711 ENSMUST00000194029 Tstd1 protein_coding Interval_159604 chr8 95758367 95758874 + 0 NA intron (ENSMUSG00000036550.16, intron 16 of 47) protein_coding-intron (ENSMUSG00000036550.16, intron 16 of 47) -1536 ENSMUSG00000065211.3 ENSMUSG00000065211 ENSMUST00000083277 Gm26265 snoRNA Interval_142049 chr6 136769964 136770512 + 0 NA intron (ENSMUSG00000042638.14, intron 2 of 25) protein_coding-intron (ENSMUSG00000042638.14, intron 2 of 26) 11504 ENSMUSG00000042638.14 ENSMUSG00000042638 ENSMUST00000078095 Gucy2c protein_coding Interval_166137 chr9 56961403 56962117 + 0 NA intron (ENSMUSG00000055334.4, intron 2 of 8) protein_coding-intron (ENSMUSG00000055334.4, intron 2 of 8) 10882 ENSMUSG00000055334.4 ENSMUSG00000055334 ENSMUST00000068856 Snupn protein_coding Interval_34206 chr11 121299888 121301274 + 0 NA TTS (ENSMUSG00000039275.9) protein_coding-TTS (ENSMUSG00000039275.9) 9837 ENSMUSG00000039275.9 ENSMUSG00000039275 ENSMUST00000151492 Foxk2 protein_coding Interval_159710 chr8 98652066 98652904 + 0 NA Intergenic Intergenic 22717 ENSMUSG00000080480.1 ENSMUSG00000080480 ENSMUST00000116830 Gm23494 snRNA Interval_170094 chr9 104397087 104397729 + 0 NA Intergenic Intergenic -28705 ENSMUSG00000089406.1 ENSMUSG00000089406 ENSMUST00000158781 Mir2136 miRNA Interval_39108 chr12 85110206 85111515 + 0 NA promoter-TSS (ENSMUSG00000004789.10) protein_coding-promoter-TSS (ENSMUSG00000004789.10) -101 ENSMUSG00000042320.17 ENSMUSG00000042320 ENSMUST00000221003 Prox2 protein_coding Interval_153091 chr7 141293795 141294969 + 0 NA TTS (ENSMUSG00000025496.5) protein_coding-TTS (ENSMUSG00000025496.5) 1251 ENSMUSG00000025496.5 ENSMUSG00000025496 ENSMUST00000209649 Drd4 protein_coding Interval_109460 chr3 142661649 142661968 + 0 NA intron (ENSMUSG00000105317.2, intron 4 of 7) unprocessed_pseudogene-intron (ENSMUSG00000105317.2, intron 4 of 7) 2860 ENSMUSG00000105317.2 ENSMUSG00000105317 ENSMUST00000198870 Gbp2-ps unprocessed_pseudogene Interval_86558 chr19 41685881 41686817 + 0 NA intron (ENSMUSG00000025020.11, intron 3 of 11) protein_coding-intron (ENSMUSG00000025020.11, intron 4 of 36) 57137 ENSMUSG00000025020.11 ENSMUSG00000025020 ENSMUST00000171586 Slit1 protein_coding Interval_171195 chr9 115117572 115118420 + 0 NA intron (ENSMUSG00000040875.12, intron 4 of 4) protein_coding-intron (ENSMUSG00000040875.12, intron 2 of 9) 68062 ENSMUSG00000098127.1 ENSMUSG00000098127 ENSMUST00000183244 Gm4665 antisense Interval_71461 chr17 23913440 23913868 + 0 NA intron (ENSMUSG00000117488.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000117400.1, intron 1 of 1) -1283 ENSMUSG00000117403.1 ENSMUSG00000117403 ENSMUST00000234929 Gm50059 processed_pseudogene Interval_40265 chr12 102888489 102889271 + 0 NA Intergenic Intergenic -10436 ENSMUSG00000043319.5 ENSMUSG00000043319 ENSMUST00000053611 Cox8c protein_coding Interval_145460 chr7 34896372 34897857 + 0 NA Intergenic Intergenic 46871 ENSMUSG00000077469.1 ENSMUSG00000077469 ENSMUST00000104281 Gm25922 snoRNA Interval_11566 chr1 182763452 182765047 + 0 NA promoter-TSS (ENSMUSG00000038576.15) protein_coding-promoter-TSS (ENSMUSG00000038576.15) -307 ENSMUSG00000038576.15 ENSMUSG00000038576 ENSMUST00000085724 Susd4 protein_coding Interval_156271 chr8 46718447 46719127 + 0 NA intron (ENSMUSG00000097534.3, intron 2 of 4) bidirectional_promoter_lncRNA-intron (ENSMUSG00000097534.3, intron 2 of 4) 20721 ENSMUSG00000097534.3 ENSMUSG00000097534 ENSMUST00000181167 Gm16675 bidirectional_promoter_lncRNA Interval_124807 chr5 54334998 54335380 + 0 NA Intergenic Intergenic -14802 ENSMUSG00000105912.1 ENSMUSG00000105912 ENSMUST00000197424 Gm10440 lincRNA Interval_127290 chr5 102142438 102143024 + 0 NA Intergenic Intergenic -16795 ENSMUSG00000105088.1 ENSMUSG00000105088 ENSMUST00000195986 Gm17978 processed_pseudogene Interval_2646 chr1 42891443 42892042 + 0 NA intron (ENSMUSG00000060679.14, intron 1 of 6) protein_coding-intron (ENSMUSG00000060679.14, intron 5 of 10) -11315 ENSMUSG00000060679.14 ENSMUSG00000060679 ENSMUST00000202358 Mrps9 protein_coding Interval_96979 chr2 130229575 130230026 + 0 NA intron (ENSMUSG00000060332.9, intron 7 of 18) protein_coding-intron (ENSMUSG00000060332.9, intron 8 of 19) 33257 ENSMUSG00000060332.9 ENSMUSG00000060332 ENSMUST00000166774 Tmc2 protein_coding Interval_23949 chr11 28699326 28700055 + 0 NA Intergenic Intergenic 18126 ENSMUSG00000084966.1 ENSMUSG00000084966 ENSMUST00000146554 2810471M01Rik lincRNA Interval_62710 chr15 96396195 96397893 + 0 NA intron (ENSMUSG00000033237.19, intron 4 of 4) protein_coding-intron (ENSMUSG00000033237.19, intron 20 of 20) -7814 ENSMUSG00000093529.1 ENSMUSG00000093529 ENSMUST00000176951 Gm25397 miRNA Interval_107318 chr3 105771683 105772115 + 0 NA intron (ENSMUSG00000068798.10, intron 1 of 5) protein_coding-intron (ENSMUSG00000068798.10, intron 1 of 7) -1702 ENSMUSG00000105842.1 ENSMUSG00000105842 ENSMUST00000200120 Gm43329 sense_intronic Interval_160549 chr8 110592147 110593338 + 0 NA exon (ENSMUSG00000059854.8, exon 78 of 87) protein_coding-exon (ENSMUSG00000059854.8, exon 78 of 87) -35880 ENSMUSG00000105825.1 ENSMUSG00000105825 ENSMUST00000104619 Gm44489 miRNA Interval_59371 chr15 51960148 51960504 + 0 NA Intergenic Intergenic 31184 ENSMUSG00000022314.10 ENSMUSG00000022314 ENSMUST00000226529 Rad21 protein_coding Interval_86155 chr19 37133596 37134282 + 0 NA intron (ENSMUSG00000039652.16, intron 3 of 8) protein_coding-intron (ENSMUSG00000039652.16, intron 3 of 10) 15223 ENSMUSG00000080544.1 ENSMUSG00000080544 ENSMUST00000116894 Gm22714 ribozyme Interval_34187 chr11 121167414 121167610 + 0 NA Intergenic Intergenic -1587 ENSMUSG00000081835.1 ENSMUSG00000081835 ENSMUST00000119569 Gm11790 processed_pseudogene Interval_152852 chr7 138829600 138831257 + 0 NA Intergenic Intergenic 9683 ENSMUSG00000110241.1 ENSMUSG00000110241 ENSMUST00000211620 Gm45506 processed_pseudogene Interval_161952 chr8 124014078 124014921 + 0 NA intron (ENSMUSG00000038697.15, intron 1 of 1) protein_coding-intron (ENSMUSG00000038697.15, intron 1 of 4) 6812 ENSMUSG00000038697.15 ENSMUSG00000038697 ENSMUST00000213055 Taf5l protein_coding Interval_78538 chr18 14579838 14580213 + 0 NA Intergenic Intergenic 9878 ENSMUSG00000053740.8 ENSMUSG00000053740 ENSMUST00000066378 Gm6457 processed_pseudogene Interval_19242 chr10 95718824 95720892 + 0 NA intron (ENSMUSG00000112289.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000112289.1, intron 1 of 1) -2351 ENSMUSG00000112519.1 ENSMUSG00000112519 ENSMUST00000217814 Gm47671 lincRNA Interval_136137 chr6 51423325 51423971 + 0 NA Intergenic Intergenic -9101 ENSMUSG00000029832.16 ENSMUSG00000029832 ENSMUST00000160133 Nfe2l3 protein_coding Interval_133043 chr5 149488354 149489293 + 0 NA TTS (ENSMUSG00000107132.1) antisense-TTS (ENSMUSG00000107132.1) 14229 ENSMUSG00000106879.1 ENSMUSG00000106879 ENSMUST00000201267 Gm2566 processed_pseudogene Interval_162917 chr9 13070863 13071539 + 0 NA Intergenic Intergenic 34654 ENSMUSG00000111830.1 ENSMUSG00000111830 ENSMUST00000216694 4930568E12Rik lincRNA Interval_46664 chr13 68481341 68482281 + 0 NA Intergenic Intergenic 9578 ENSMUSG00000113394.1 ENSMUSG00000113394 ENSMUST00000221886 Gm48436 lincRNA Interval_112744 chr4 44557221 44558702 + 0 NA intron (ENSMUSG00000014030.15, intron 6 of 7) protein_coding-intron (ENSMUSG00000014030.15, intron 6 of 7) 49607 ENSMUSG00000092761.1 ENSMUSG00000092761 ENSMUST00000175020 Mir5120 miRNA Interval_127184 chr5 100911681 100912521 + 0 NA intron (ENSMUSG00000106255.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000106255.1, intron 1 of 2) 1606 ENSMUSG00000106255.1 ENSMUSG00000106255 ENSMUST00000199211 Gm36793 lincRNA Interval_111402 chr4 20818047 20818374 + 0 NA Intergenic Intergenic -39643 ENSMUSG00000055761.14 ENSMUSG00000055761 ENSMUST00000102998 Nkain3 protein_coding Interval_168166 chr9 77693497 77693705 + 0 NA intron (ENSMUSG00000111225.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000111225.1, intron 1 of 1) 14281 ENSMUSG00000110838.1 ENSMUSG00000110838 ENSMUST00000214443 Gm47789 lincRNA Interval_93256 chr2 71508546 71508853 + 0 NA intron (ENSMUSG00000041921.16, intron 2 of 8) protein_coding-intron (ENSMUSG00000041921.16, intron 2 of 9) -6713 ENSMUSG00000041921.16 ENSMUSG00000041921 ENSMUST00000148164 Metap1d protein_coding Interval_144083 chr7 19355954 19356490 + 0 NA TTS (ENSMUSG00000003549.9) protein_coding-TTS (ENSMUSG00000003549.9) 3261 ENSMUSG00000047649.9 ENSMUSG00000047649 ENSMUST00000176333 Cd3eap protein_coding Interval_138221 chr6 86403831 86404802 + 0 NA promoter-TSS (ENSMUSG00000071337.11) protein_coding-promoter-TSS (ENSMUSG00000071337.11) -7175 ENSMUSG00000029998.14 ENSMUSG00000029998 ENSMUST00000203960 Pcyox1 protein_coding Interval_32322 chr11 106941605 106941800 + 0 NA Intergenic Intergenic -20941 ENSMUSG00000099125.1 ENSMUSG00000099125 ENSMUST00000184007 Gm27322 miRNA Interval_40381 chr12 104535917 104536141 + 0 NA Intergenic Intergenic 16061 ENSMUSG00000112954.1 ENSMUSG00000112954 ENSMUST00000222329 Gm49732 lincRNA Interval_83552 chr18 89216354 89216602 + 0 NA intron (ENSMUSG00000034028.16, intron 3 of 6) protein_coding-intron (ENSMUSG00000034028.16, intron 3 of 6) 18996 ENSMUSG00000034028.16 ENSMUSG00000034028 ENSMUST00000236835 Cd226 protein_coding Interval_43518 chr13 32507451 32507880 + 0 NA Intergenic Intergenic 28750 ENSMUSG00000113449.1 ENSMUSG00000113449 ENSMUST00000221163 Gm48073 lincRNA Interval_167105 chr9 65322570 65322836 + 0 NA exon (ENSMUSG00000015357.10, exon 11 of 14) protein_coding-exon (ENSMUSG00000015357.10, exon 11 of 14) -9817 ENSMUSG00000111712.1 ENSMUSG00000111712 ENSMUST00000214251 Gm39363 lincRNA Interval_52959 chr14 52295273 52296128 + 0 NA TTS (ENSMUSG00000022160.18) protein_coding-TTS (ENSMUSG00000022160.18) 9424 ENSMUSG00000022160.18 ENSMUSG00000022160 ENSMUST00000197394 Mettl3 protein_coding Interval_144542 chr7 25794955 25795172 + 0 NA Intergenic Intergenic -2220 ENSMUSG00000108767.1 ENSMUSG00000108767 ENSMUST00000205306 Gm29763 processed_pseudogene Interval_12019 chr1 188894037 188894757 + 0 NA intron (ENSMUSG00000026609.15, intron 60 of 70) protein_coding-intron (ENSMUSG00000026609.15, intron 60 of 70) 113444 ENSMUSG00000026608.13 ENSMUSG00000026608 ENSMUST00000193273 Kctd3 protein_coding Interval_13860 chr10 24015689 24016177 + 0 NA Intergenic Intergenic 2463 ENSMUSG00000084182.1 ENSMUSG00000084182 ENSMUST00000122123 Taar7c-ps unprocessed_pseudogene Interval_167489 chr9 69937557 69938209 + 0 NA Intergenic Intergenic 52085 ENSMUSG00000101555.1 ENSMUSG00000101555 ENSMUST00000185564 Gm28731 antisense Interval_61838 chr15 84556285 84558368 + 0 NA exon (ENSMUSG00000055745.4, exon 1 of 1) protein_coding-exon (ENSMUSG00000055745.4, exon 1 of 1) 497 ENSMUSG00000055745.4 ENSMUSG00000055745 ENSMUST00000069476 Rtl6 protein_coding Interval_9295 chr1 155982703 155982944 + 0 NA Intergenic Intergenic 9505 ENSMUSG00000102833.1 ENSMUSG00000102833 ENSMUST00000193347 Gm9694 TEC Interval_155755 chr8 36874300 36874528 + 0 NA intron (ENSMUSG00000031523.16, intron 2 of 2) protein_coding-intron (ENSMUSG00000031523.16, intron 2 of 3) 78022 ENSMUSG00000031523.16 ENSMUSG00000031523 ENSMUST00000179501 Dlc1 protein_coding Interval_103257 chr3 37583437 37584284 + 0 NA Intergenic Intergenic 16212 ENSMUSG00000081093.1 ENSMUSG00000081093 ENSMUST00000119004 Gm12565 processed_pseudogene Interval_56055 chr14 105176475 105177728 + 0 NA promoter-TSS (ENSMUSG00000022119.15) protein_coding-promoter-TSS (ENSMUSG00000022119.15) 7284 ENSMUSG00000115831.1 ENSMUSG00000115831 ENSMUST00000226837 Gm48937 processed_pseudogene Interval_55239 chr14 79564623 79565455 + 0 NA intron (ENSMUSG00000036461.16, intron 3 of 7) protein_coding-intron (ENSMUSG00000036461.16, intron 3 of 8) -2747 ENSMUSG00000093684.2 ENSMUSG00000093684 ENSMUST00000176930 Gm27857 miRNA Interval_60484 chr15 74247376 74247910 + 0 NA Intergenic Intergenic -153310 ENSMUSG00000082585.3 ENSMUSG00000082585 ENSMUST00000120421 Gm15387 processed_pseudogene Interval_33771 chr11 118407410 118408266 + 0 NA exon (ENSMUSG00000025575.14, exon 4 of 4) protein_coding-exon (ENSMUSG00000025575.14, exon 4 of 4) 7956 ENSMUSG00000025575.14 ENSMUSG00000025575 ENSMUST00000106287 Cant1 protein_coding Interval_115253 chr4 94890371 94891768 + 0 NA Intergenic Intergenic 37774 ENSMUSG00000028575.11 ENSMUSG00000028575 ENSMUST00000030309 Eqtn protein_coding Interval_127857 chr5 108285329 108285843 + 0 NA Intergenic Intergenic 8666 ENSMUSG00000029265.4 ENSMUSG00000029265 ENSMUST00000154862 Dr1 protein_coding Interval_142918 chr6 146948543 146949221 + 0 NA intron (ENSMUSG00000016487.15, intron 3 of 4) protein_coding-intron (ENSMUSG00000016487.15, intron 2 of 26) 5532 ENSMUSG00000040163.14 ENSMUSG00000040163 ENSMUST00000111622 1700034J05Rik protein_coding Interval_143411 chr7 6511910 6512172 + 0 NA promoter-TSS (ENSMUSG00000084654.1) rRNA-promoter-TSS (ENSMUSG00000084654.1) -194 ENSMUSG00000084654.1 ENSMUSG00000084654 ENSMUST00000122705 n-R5s150 rRNA Interval_120428 chr4 148562865 148564164 + 0 NA intron (ENSMUSG00000017264.16, intron 6 of 24) protein_coding-intron (ENSMUSG00000017264.16, intron 6 of 24) 6362 ENSMUSG00000082860.1 ENSMUSG00000082860 ENSMUST00000120110 Gm13204 processed_pseudogene Interval_39320 chr12 86689519 86689959 + 0 NA intron (ENSMUSG00000021256.5, intron 5 of 6) protein_coding-intron (ENSMUSG00000021256.5, intron 5 of 6) 11039 ENSMUSG00000021256.5 ENSMUSG00000021256 ENSMUST00000021681 Vash1 protein_coding Interval_23779 chr11 26158991 26159719 + 0 NA intron (ENSMUSG00000032985.15, intron 1 of 1) protein_coding-intron (ENSMUSG00000032985.15, intron 1 of 6) -42885 ENSMUSG00000099015.1 ENSMUSG00000099015 ENSMUST00000185114 Mir6372 miRNA Interval_52557 chr14 47488898 47489140 + 0 NA intron (ENSMUSG00000037536.14, intron 1 of 3) protein_coding-intron (ENSMUSG00000037536.14, intron 1 of 1) -2549 ENSMUSG00000115570.1 ENSMUSG00000115570 ENSMUST00000228735 Gm48986 TEC Interval_141269 chr6 126752264 126752479 + 0 NA Intergenic Intergenic -11697 ENSMUSG00000038077.7 ENSMUSG00000038077 ENSMUST00000112242 Kcna6 protein_coding Interval_35713 chr12 28589109 28590868 + 0 NA Intergenic Intergenic -7473 ENSMUSG00000020636.14 ENSMUSG00000020636 ENSMUST00000020965 Allc protein_coding Interval_11599 chr1 183183810 183185665 + 0 NA intron (ENSMUSG00000030768.12, intron 1 of 8) protein_coding-intron (ENSMUSG00000030768.12, intron 2 of 9) 21679 ENSMUSG00000102478.1 ENSMUSG00000102478 ENSMUST00000195236 BC085271 transcribed_processed_pseudogene Interval_162791 chr9 9143356 9143552 + 0 NA intron (ENSMUSG00000050730.17, intron 3 of 5) protein_coding-intron (ENSMUSG00000050730.17, intron 3 of 22) -92834 ENSMUSG00000085253.3 ENSMUSG00000085253 ENSMUST00000150263 Gm16833 antisense Interval_169078 chr9 91752051 91752354 + 0 NA Intergenic Intergenic 5944 ENSMUSG00000104216.1 ENSMUSG00000104216 ENSMUST00000194999 Gm37987 TEC Interval_89832 chr2 25836004 25836876 + 0 NA Intergenic Intergenic 10808 ENSMUSG00000059625.6 ENSMUSG00000059625 ENSMUST00000076989 Sohlh1 protein_coding Interval_113637 chr4 57178713 57179356 + 0 NA Intergenic Intergenic 6963 ENSMUSG00000085967.1 ENSMUSG00000085967 ENSMUST00000152074 Gm12530 antisense Interval_84637 chr19 14562131 14562519 + 0 NA intron (ENSMUSG00000024642.17, intron 3 of 3) protein_coding-intron (ENSMUSG00000024642.17, intron 5 of 19) 33214 ENSMUSG00000024642.17 ENSMUSG00000024642 ENSMUST00000235975 Tle4 protein_coding Interval_49074 chr13 107736178 107736419 + 0 NA intron (ENSMUSG00000032846.10, intron 8 of 12) protein_coding-intron (ENSMUSG00000032846.10, intron 10 of 14) 48901 ENSMUSG00000102000.6 ENSMUSG00000102000 ENSMUST00000188490 1700006H21Rik lincRNA Interval_149932 chr7 102794462 102795150 + 0 NA Intergenic Intergenic 3556 ENSMUSG00000110074.1 ENSMUSG00000110074 ENSMUST00000210909 Olfr563-ps1 unprocessed_pseudogene Interval_86219 chr19 37877578 37878914 + 0 NA Intergenic Intergenic 7976 ENSMUSG00000118115.1 ENSMUSG00000118115 ENSMUST00000237198 Gm4757 processed_pseudogene Interval_135724 chr6 45222721 45222894 + 0 NA intron (ENSMUSG00000039419.17, intron 2 of 3) protein_coding-intron (ENSMUSG00000039419.17, intron 1 of 23) 18997 ENSMUSG00000108146.1 ENSMUSG00000108146 ENSMUST00000203950 Gm43889 TEC Interval_126576 chr5 90356658 90357058 + 0 NA intron (ENSMUSG00000055204.15, intron 1 of 26) protein_coding-intron (ENSMUSG00000055204.15, intron 1 of 33) 9327 ENSMUSG00000055204.15 ENSMUSG00000055204 ENSMUST00000202226 Ankrd17 protein_coding Interval_151758 chr7 126466996 126468097 + 0 NA exon (ENSMUSG00000030733.10, exon 10 of 10) protein_coding-exon (ENSMUSG00000030733.10, exon 10 of 10) 5522 ENSMUSG00000030733.10 ENSMUSG00000030733 ENSMUST00000206643 Sh2b1 protein_coding Interval_13178 chr10 12855140 12856090 + 0 NA intron (ENSMUSG00000019820.11, intron 2 of 17) protein_coding-intron (ENSMUSG00000019820.11, intron 1 of 73) 9527 ENSMUSG00000112698.1 ENSMUSG00000112698 ENSMUST00000219425 Gm7525 processed_pseudogene Interval_92494 chr2 60110142 60110498 + 0 NA intron (ENSMUSG00000026987.16, intron 1 of 2) protein_coding-intron (ENSMUSG00000026987.16, intron 1 of 34) -11606 ENSMUSG00000087181.3 ENSMUSG00000087181 ENSMUST00000140763 Gm13570 processed_pseudogene Interval_95992 chr2 119018513 119019579 + 0 NA exon (ENSMUSG00000039983.13, exon 4 of 4) protein_coding-exon (ENSMUSG00000039983.13, exon 4 of 4) 10347 ENSMUSG00000039983.13 ENSMUSG00000039983 ENSMUST00000110833 Ccdc32 protein_coding Interval_47954 chr13 94608595 94609432 + 0 NA Intergenic Intergenic -10267 ENSMUSG00000103438.1 ENSMUSG00000103438 ENSMUST00000191800 Gm36991 TEC Interval_22150 chr11 6635733 6636648 + 0 NA intron (ENSMUSG00000000381.10, intron 1 of 1) protein_coding-intron (ENSMUSG00000000381.10, intron 3 of 3) 1276 ENSMUSG00000000381.10 ENSMUSG00000000381 ENSMUST00000127341 Wap protein_coding Interval_174004 chrX 128877681 128877914 + 0 NA Intergenic Intergenic 177251 ENSMUSG00000065898.1 ENSMUSG00000065898 ENSMUST00000083964 Gm24522 snRNA Interval_167941 chr9 74819534 74820446 + 0 NA Intergenic Intergenic -28473 ENSMUSG00000093662.2 ENSMUSG00000093662 ENSMUST00000160950 Gm20649 lincRNA Interval_38951 chr12 84055118 84056029 + 0 NA intron (ENSMUSG00000021228.15, intron 1 of 2) protein_coding-intron (ENSMUSG00000021228.15, intron 2 of 3) -1766 ENSMUSG00000097762.1 ENSMUSG00000097762 ENSMUST00000180751 4732463B04Rik antisense Interval_92858 chr2 66956670 66957038 + 0 NA Intergenic Intergenic 14296 ENSMUSG00000082218.1 ENSMUSG00000082218 ENSMUST00000122405 Gm13602 processed_pseudogene Interval_110233 chr3 154654402 154655560 + 0 NA Intergenic Intergenic -1720 ENSMUSG00000103204.1 ENSMUSG00000103204 ENSMUST00000195806 Gm38139 sense_overlapping Interval_84777 chr19 16575877 16576780 + 0 NA intron (ENSMUSG00000024697.4, intron 2 of 6) protein_coding-intron (ENSMUSG00000024697.4, intron 2 of 6) -3860 ENSMUSG00000118023.1 ENSMUSG00000118023 ENSMUST00000237942 Gm50363 processed_pseudogene Interval_121957 chr5 12557833 12558143 + 0 NA exon (ENSMUSG00000104632.1, exon 1 of 1) TEC-exon (ENSMUSG00000104632.1, exon 1 of 1) 3356 ENSMUSG00000104632.1 ENSMUSG00000104632 ENSMUST00000196982 Gm42909 TEC Interval_58356 chr15 33405681 33405920 + 0 NA exon (ENSMUSG00000058101.3, exon 1 of 1) transcribed_processed_pseudogene-exon (ENSMUSG00000058101.3, exon 1 of 1) 176 ENSMUSG00000058101.3 ENSMUSG00000058101 ENSMUST00000079057 1700084J12Rik transcribed_processed_pseudogene Interval_63729 chr15 103101924 103102910 + 0 NA promoter-TSS (ENSMUSG00000101356.1) lincRNA-promoter-TSS (ENSMUSG00000101356.1) 180 ENSMUSG00000099758.1 ENSMUSG00000099758 ENSMUST00000186379 Gm10830 lincRNA Interval_36268 chr12 40486249 40486598 + 0 NA intron (ENSMUSG00000035954.10, intron 1 of 5) protein_coding-intron (ENSMUSG00000035954.10, intron 1 of 52) 40340 ENSMUSG00000035954.10 ENSMUSG00000035954 ENSMUST00000220850 Dock4 protein_coding Interval_42236 chr13 10569520 10569946 + 0 NA intron (ENSMUSG00000097009.2, intron 2 of 3) antisense-intron (ENSMUSG00000097009.2, intron 5 of 7) -12026 ENSMUSG00000113243.1 ENSMUSG00000113243 ENSMUST00000222590 Gm36525 lincRNA Interval_125932 chr5 75909531 75909903 + 0 NA promoter-TSS (ENSMUSG00000088783.1) miRNA-promoter-TSS (ENSMUSG00000088783.1) -110 ENSMUSG00000088783.1 ENSMUSG00000088783 ENSMUST00000158158 Gm25374 miRNA Interval_20607 chr10 119408024 119408749 + 0 NA Intergenic Intergenic 2836 ENSMUSG00000111972.1 ENSMUSG00000111972 ENSMUST00000217825 Gm40778 TEC Interval_72190 chr17 28506689 28507901 + 0 NA exon (ENSMUSG00000024222.17, exon 2 of 14) protein_coding-exon (ENSMUSG00000024222.17, exon 2 of 14) 10219 ENSMUSG00000024222.17 ENSMUSG00000024222 ENSMUST00000147716 Fkbp5 protein_coding Interval_113083 chr4 47714941 47715111 + 0 NA Intergenic Intergenic 111137 ENSMUSG00000098518.1 ENSMUSG00000098518 ENSMUST00000184188 Gm27668 misc_RNA Interval_102040 chr3 16024869 16025640 + 0 NA Intergenic Intergenic 11436 ENSMUSG00000094598.1 ENSMUSG00000094598 ENSMUST00000180054 Gm24694 miRNA Interval_127023 chr5 99654533 99655296 + 0 NA promoter-TSS (ENSMUSG00000087791.1) snoRNA-promoter-TSS (ENSMUSG00000087791.1) -787 ENSMUSG00000087791.1 ENSMUSG00000087791 ENSMUST00000157166 Gm25969 snoRNA Interval_47423 chr13 83829998 83830252 + 0 NA intron (ENSMUSG00000050334.12, intron 1 of 2) lincRNA-intron (ENSMUSG00000050334.12, intron 3 of 3) -2215 ENSMUSG00000114687.1 ENSMUSG00000114687 ENSMUST00000225105 Gm5452 processed_pseudogene Interval_42633 chr13 17358602 17359101 + 0 NA intron (ENSMUSG00000055137.7, intron 9 of 13) protein_coding-intron (ENSMUSG00000055137.7, intron 9 of 13) -1443 ENSMUSG00000113889.1 ENSMUSG00000113889 ENSMUST00000222020 Gm48501 processed_pseudogene Interval_149063 chr7 92795782 92796003 + 0 NA intron (ENSMUSG00000030643.14, intron 1 of 3) protein_coding-intron (ENSMUSG00000030643.14, intron 1 of 4) 17387 ENSMUSG00000109257.1 ENSMUSG00000109257 ENSMUST00000207434 Gm45200 TEC Interval_129320 chr5 119055111 119055922 + 0 NA Intergenic Intergenic -52718 ENSMUSG00000100573.1 ENSMUSG00000100573 ENSMUST00000190550 1700081H04Rik lincRNA Interval_167885 chr9 73514700 73514889 + 0 NA intron (ENSMUSG00000062151.13, intron 30 of 32) protein_coding-intron (ENSMUSG00000062151.13, intron 29 of 31) 39076 ENSMUSG00000103832.1 ENSMUSG00000103832 ENSMUST00000195250 Gm37611 TEC Interval_35306 chr12 20311670 20313254 + 0 NA promoter-TSS (ENSMUSG00000116558.1) unprocessed_pseudogene-promoter-TSS (ENSMUSG00000116558.1) -53 ENSMUSG00000116558.1 ENSMUSG00000116558 ENSMUST00000231862 Gm49697 unprocessed_pseudogene Interval_58466 chr15 34889323 34889775 + 0 NA intron (ENSMUSG00000022329.15, intron 10 of 10) protein_coding-intron (ENSMUSG00000022329.15, intron 10 of 10) 51500 ENSMUSG00000050963.7 ENSMUSG00000050963 ENSMUST00000228725 Kcns2 protein_coding Interval_33563 chr11 117230459 117230798 + 0 NA intron (ENSMUSG00000059248.13, intron 2 of 11) protein_coding-intron (ENSMUSG00000059248.13, intron 2 of 11) 32809 ENSMUSG00000086050.1 ENSMUSG00000086050 ENSMUST00000123882 Gm16045 antisense Interval_9527 chr1 158552209 158552686 + 0 NA promoter-TSS (ENSMUSG00000026587.15) protein_coding-promoter-TSS (ENSMUSG00000026587.15) -481 ENSMUSG00000102618.1 ENSMUSG00000102618 ENSMUST00000195288 Gm37848 TEC Interval_138102 chr6 85189930 85190809 + 0 NA intron (ENSMUSG00000033726.8, intron 1 of 2) protein_coding-intron (ENSMUSG00000033726.8, intron 1 of 2) -3150 ENSMUSG00000033726.8 ENSMUSG00000033726 ENSMUST00000173919 Emx1 protein_coding Interval_8507 chr1 140374129 140374364 + 0 NA intron (ENSMUSG00000052726.16, intron 5 of 27) protein_coding-intron (ENSMUSG00000052726.16, intron 5 of 26) 107759 ENSMUSG00000102698.1 ENSMUSG00000102698 ENSMUST00000195546 Gm37777 TEC Interval_118203 chr4 129513088 129515193 + 0 NA intron (ENSMUSG00000047945.6, intron 1 of 1) protein_coding-intron (ENSMUSG00000047945.6, intron 1 of 1) 559 ENSMUSG00000047945.6 ENSMUSG00000047945 ENSMUST00000062356 Marcksl1 protein_coding Interval_58098 chr15 27884394 27885500 + 0 NA intron (ENSMUSG00000022263.10, intron 8 of 35) protein_coding-intron (ENSMUSG00000022263.10, intron 9 of 56) -17716 ENSMUSG00000115161.1 ENSMUSG00000115161 ENSMUST00000228406 Gm20555 TEC Interval_57235 chr15 8038342 8038894 + 0 NA intron (ENSMUSG00000039828.7, intron 7 of 17) protein_coding-intron (ENSMUSG00000039828.7, intron 7 of 17) 60591 ENSMUSG00000039828.7 ENSMUSG00000039828 ENSMUST00000227371 Wdr70 protein_coding Interval_2440 chr1 39361705 39362887 + 0 NA exon (ENSMUSG00000026077.15, exon 21 of 21) protein_coding-exon (ENSMUSG00000026077.15, exon 21 of 21) -5853 ENSMUSG00000073702.11 ENSMUSG00000073702 ENSMUST00000191855 Rpl31 protein_coding Interval_113135 chr4 48558304 48558759 + 0 NA intron (ENSMUSG00000039693.11, intron 2 of 2) protein_coding-intron (ENSMUSG00000039693.11, intron 2 of 2) 17985 ENSMUSG00000039693.11 ENSMUSG00000039693 ENSMUST00000132360 Msantd3 protein_coding Interval_4025 chr1 66693488 66693816 + 0 NA intron (ENSMUSG00000055567.18, intron 61 of 63) protein_coding-intron (ENSMUSG00000055567.18, intron 62 of 64) -1296 ENSMUSG00000103375.1 ENSMUSG00000103375 ENSMUST00000192513 Gm37181 TEC Interval_69220 chr16 91438464 91438926 + 0 NA intron (ENSMUSG00000116987.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000116987.1, intron 1 of 1) -19726 ENSMUSG00000116782.1 ENSMUSG00000116782 ENSMUST00000231789 Gm46562 processed_pseudogene Interval_137656 chr6 77979118 77981068 + 0 NA promoter-TSS (ENSMUSG00000063063.12) protein_coding-promoter-TSS (ENSMUSG00000063063.12) -4423 ENSMUSG00000107473.1 ENSMUSG00000107473 ENSMUST00000203456 Gm44255 TEC Interval_73844 chr17 44487433 44488790 + 0 NA Intergenic Intergenic -73879 ENSMUSG00000090048.1 ENSMUSG00000090048 ENSMUST00000160203 Runx2os3 antisense Interval_69526 chr16 94043720 94044543 + 0 NA Intergenic Intergenic 28189 ENSMUSG00000116939.1 ENSMUSG00000116939 ENSMUST00000232441 Gm49619 processed_pseudogene Interval_77839 chr18 4369262 4369559 + 0 NA TTS (ENSMUSG00000117401.1) lincRNA-TTS (ENSMUSG00000117401.1) -6193 ENSMUSG00000024234.7 ENSMUSG00000024234 ENSMUST00000234924 Mtpap protein_coding Interval_120162 chr4 143126669 143127150 + 0 NA intron (ENSMUSG00000057637.13, intron 8 of 9) protein_coding-intron (ENSMUSG00000057637.13, intron 8 of 9) 9253 ENSMUSG00000106597.1 ENSMUSG00000106597 ENSMUST00000197026 Mir7021 miRNA Interval_67329 chr16 46408017 46408463 + 0 NA intron (ENSMUSG00000022656.15, intron 2 of 2) protein_coding-intron (ENSMUSG00000022656.15, intron 7 of 8) 88532 ENSMUSG00000022656.15 ENSMUSG00000022656 ENSMUST00000133935 Nectin3 protein_coding Interval_32776 chr11 110478017 110479450 + 0 NA promoter-TSS (ENSMUSG00000020623.11) protein_coding-promoter-TSS (ENSMUSG00000020623.11) 1356 ENSMUSG00000020623.11 ENSMUSG00000020623 ENSMUST00000133920 Map2k6 protein_coding Interval_21614 chr11 3242552 3244018 + 0 NA exon (ENSMUSG00000020454.17, exon 17 of 18) protein_coding-exon (ENSMUSG00000020454.17, exon 17 of 18) 23107 ENSMUSG00000020457.13 ENSMUSG00000020457 ENSMUST00000132159 Drg1 protein_coding Interval_140726 chr6 120890420 120890871 + 0 NA exon (ENSMUSG00000009112.4, exon 7 of 7) protein_coding-exon (ENSMUSG00000009112.4, exon 7 of 7) 6923 ENSMUSG00000004446.12 ENSMUSG00000004446 ENSMUST00000125915 Bid protein_coding Interval_164077 chr9 31325921 31327489 + 0 NA intron (ENSMUSG00000042496.18, intron 4 of 20) protein_coding-intron (ENSMUSG00000042496.18, intron 3 of 20) 13152 ENSMUSG00000042496.18 ENSMUSG00000042496 ENSMUST00000074510 Prdm10 protein_coding Interval_21619 chr11 3265607 3267416 + 0 NA promoter-TSS (ENSMUSG00000020457.13) protein_coding-promoter-TSS (ENSMUSG00000020457.13) -119 ENSMUSG00000020457.13 ENSMUSG00000020457 ENSMUST00000132159 Drg1 protein_coding Interval_110962 chr4 10896775 10897328 + 0 NA intron (ENSMUSG00000059482.15, intron 5 of 5) protein_coding-intron (ENSMUSG00000059482.15, intron 5 of 5) 22486 ENSMUSG00000059482.15 ENSMUSG00000059482 ENSMUST00000142026 2610301B20Rik protein_coding Interval_46900 chr13 73286266 73286466 + 0 NA Intergenic Intergenic 13136 ENSMUSG00000113485.1 ENSMUSG00000113485 ENSMUST00000223190 Gm48000 TEC Interval_71069 chr17 17638780 17639071 + 0 NA Intergenic Intergenic -9896 ENSMUSG00000116818.1 ENSMUSG00000116818 ENSMUST00000232676 Gm7513 processed_pseudogene Interval_108383 chr3 126462477 126462823 + 0 NA Intergenic Intergenic 14907 ENSMUSG00000105233.1 ENSMUSG00000105233 ENSMUST00000197129 Gm20568 processed_pseudogene Interval_13101 chr10 11340894 11341328 + 0 NA Intergenic Intergenic -2342 ENSMUSG00000055493.4 ENSMUSG00000055493 ENSMUST00000161438 Epm2a protein_coding Interval_55854 chr14 101548579 101549199 + 0 NA intron (ENSMUSG00000033083.16, intron 1 of 20) protein_coding-intron (ENSMUSG00000033083.16, intron 1 of 13) 24125 ENSMUSG00000115319.1 ENSMUSG00000115319 ENSMUST00000228293 Gm34417 processed_pseudogene Interval_19437 chr10 99243949 99244879 + 0 NA Intergenic Intergenic -6798 ENSMUSG00000112902.1 ENSMUSG00000112902 ENSMUST00000220253 Gm48884 lincRNA Interval_156586 chr8 53511635 53512435 + 0 NA exon (ENSMUSG00000031521.5, exon 1 of 10) protein_coding-exon (ENSMUSG00000031521.5, exon 1 of 10) 308 ENSMUSG00000031521.5 ENSMUSG00000031521 ENSMUST00000209811 Aga protein_coding Interval_63847 chr16 3965174 3965391 + 0 NA exon (ENSMUSG00000049871.14, exon 3 of 14) protein_coding-exon (ENSMUSG00000049871.14, exon 3 of 14) 358 ENSMUSG00000049871.14 ENSMUSG00000049871 ENSMUST00000163478 Nlrc3 protein_coding Interval_4071 chr1 67307377 67308579 + 0 NA intron (ENSMUSG00000086204.1, intron 3 of 4) lincRNA-intron (ENSMUSG00000086204.1, intron 3 of 4) 50754 ENSMUSG00000077745.1 ENSMUSG00000077745 ENSMUST00000104557 Gm26342 snoRNA Interval_110083 chr3 153135187 153136514 + 0 NA Intergenic Intergenic 46965 ENSMUSG00000105337.4 ENSMUSG00000105337 ENSMUST00000197695 1700094M23Rik lincRNA Interval_530 chr1 7030981 7031635 + 0 NA Intergenic Intergenic -4607 ENSMUSG00000103629.1 ENSMUSG00000103629 ENSMUST00000195648 Gm5694 processed_pseudogene Interval_90379 chr2 30079669 30079895 + 0 NA intron (ENSMUSG00000026785.14, intron 2 of 2) protein_coding-intron (ENSMUSG00000026785.14, intron 2 of 21) -4871 ENSMUSG00000026785.14 ENSMUSG00000026785 ENSMUST00000156197 Pkn3 protein_coding Interval_53911 chr14 63342164 63343467 + 0 NA intron (ENSMUSG00000114892.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000114892.1, intron 1 of 1) 13595 ENSMUSG00000114892.1 ENSMUSG00000114892 ENSMUST00000226066 Gm5463 lincRNA Interval_162089 chr8 125024520 125025004 + 0 NA intron (ENSMUSG00000056820.7, intron 4 of 4) protein_coding-intron (ENSMUSG00000056820.7, intron 4 of 5) -5591 ENSMUSG00000110683.1 ENSMUSG00000110683 ENSMUST00000212423 Gm45874 processed_pseudogene Interval_121847 chr5 8797918 8798991 + 0 NA promoter-TSS (ENSMUSG00000097279.1) antisense-promoter-TSS (ENSMUSG00000097279.1) 69 ENSMUSG00000097279.1 ENSMUSG00000097279 ENSMUST00000181058 Gm5106 antisense Interval_29616 chr11 85455013 85455257 + 0 NA intron (ENSMUSG00000059439.15, intron 8 of 26) protein_coding-intron (ENSMUSG00000059439.15, intron 8 of 24) -11024 ENSMUSG00000059439.15 ENSMUSG00000059439 ENSMUST00000140562 Bcas3 protein_coding Interval_53330 chr14 56288687 56288959 + 0 NA Intergenic Intergenic 13030 ENSMUSG00000114820.1 ENSMUSG00000114820 ENSMUST00000224940 Gm48200 processed_pseudogene Interval_158616 chr8 84771960 84772560 + 0 NA exon (ENSMUSG00000001911.16, exon 2 of 9) protein_coding-exon (ENSMUSG00000001911.16, exon 2 of 9) 49253 ENSMUSG00000074203.4 ENSMUSG00000074203 ENSMUST00000098571 G430095P16Rik protein_coding Interval_161544 chr8 121103462 121104727 + 0 NA TTS (ENSMUSG00000031816.15) protein_coding-TTS (ENSMUSG00000031816.15) -2617 ENSMUSG00000031816.15 ENSMUSG00000031816 ENSMUST00000128503 Mthfsd protein_coding Interval_33689 chr11 117930675 117931308 + 0 NA Intergenic Intergenic 9086 ENSMUSG00000082562.1 ENSMUSG00000082562 ENSMUST00000121028 Gm11726 processed_pseudogene Interval_72537 chr17 30575599 30577114 + 0 NA promoter-TSS (ENSMUSG00000062202.14) protein_coding-promoter-TSS (ENSMUSG00000062202.14) -112 ENSMUSG00000117725.1 ENSMUSG00000117725 ENSMUST00000237645 Gm50240 antisense Interval_46135 chr13 61939138 61939329 + 0 NA Intergenic Intergenic 21684 ENSMUSG00000113887.1 ENSMUSG00000113887 ENSMUST00000222548 Gm35619 processed_pseudogene Interval_115150 chr4 91582078 91583567 + 0 NA Intergenic Intergenic -43767 ENSMUSG00000085817.1 ENSMUSG00000085817 ENSMUST00000134966 Gm12668 lincRNA Interval_63973 chr16 4930254 4930680 + 0 NA intron (ENSMUSG00000022517.17, intron 2 of 4) protein_coding-intron (ENSMUSG00000022517.17, intron 12 of 15) -8294 ENSMUSG00000022516.10 ENSMUSG00000022516 ENSMUST00000230224 Nudt16l1 protein_coding Interval_29470 chr11 84202392 84203139 + 0 NA intron (ENSMUSG00000020532.18, intron 2 of 8) protein_coding-intron (ENSMUSG00000020532.18, intron 1 of 53) 13172 ENSMUSG00000103122.1 ENSMUSG00000103122 ENSMUST00000194891 Gm37391 TEC Interval_99424 chr2 160957316 160958081 + 0 NA intron (ENSMUSG00000057133.14, intron 34 of 36) protein_coding-intron (ENSMUSG00000057133.14, intron 34 of 36) 27348 ENSMUSG00000057133.14 ENSMUSG00000057133 ENSMUST00000125179 Chd6 protein_coding Interval_152811 chr7 138143168 138143415 + 0 NA Intergenic Intergenic -41752 ENSMUSG00000064575.1 ENSMUSG00000064575 ENSMUST00000082641 Gm25798 snRNA Interval_85309 chr19 24543593 24544232 + 0 NA intron (ENSMUSG00000024867.14, intron 1 of 3) protein_coding-intron (ENSMUSG00000024867.14, intron 1 of 14) 11926 ENSMUSG00000024867.14 ENSMUSG00000024867 ENSMUST00000145829 Pip5k1b protein_coding Interval_110657 chr4 5762562 5763125 + 0 NA intron (ENSMUSG00000049119.14, intron 2 of 4) protein_coding-intron (ENSMUSG00000049119.14, intron 2 of 2) -10036 ENSMUSG00000049119.14 ENSMUSG00000049119 ENSMUST00000145365 Fam110b protein_coding Interval_150776 chr7 114297287 114297606 + 0 NA Intergenic Intergenic -21379 ENSMUSG00000030751.18 ENSMUSG00000030751 ENSMUST00000210966 Psma1 protein_coding Interval_87854 chr19 56588524 56588767 + 0 NA intron (ENSMUSG00000025078.9, intron 6 of 10) protein_coding-intron (ENSMUSG00000025078.9, intron 6 of 10) 17848 ENSMUSG00000025078.9 ENSMUSG00000025078 ENSMUST00000236979 Nhlrc2 protein_coding Interval_109372 chr3 140716265 140717501 + 0 NA intron (ENSMUSG00000105777.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000105777.1, intron 1 of 2) 43821 ENSMUSG00000105777.1 ENSMUSG00000105777 ENSMUST00000198099 Gm43049 lincRNA Interval_13663 chr10 20724987 20725474 + 0 NA promoter-TSS (ENSMUSG00000019990.15) protein_coding-promoter-TSS (ENSMUSG00000019990.15) -30887 ENSMUSG00000111091.1 ENSMUSG00000111091 ENSMUST00000213510 Gm48651 lincRNA Interval_124497 chr5 49350216 49351056 + 0 NA intron (ENSMUSG00000029088.16, intron 1 of 8) protein_coding-intron (ENSMUSG00000029088.16, intron 1 of 8) 61196 ENSMUSG00000105700.1 ENSMUSG00000105700 ENSMUST00000199945 Gm42772 TEC Interval_171674 chr9 120072421 120073753 + 0 NA Intergenic Intergenic -3208 ENSMUSG00000052336.7 ENSMUSG00000052336 ENSMUST00000215016 Cx3cr1 protein_coding Interval_56596 chr14 120692205 120692405 + 0 NA Intergenic Intergenic -20773 ENSMUSG00000115630.1 ENSMUSG00000115630 ENSMUST00000226406 Rpl19-ps5 processed_pseudogene Interval_3546 chr1 59481396 59483612 + 0 NA promoter-TSS (ENSMUSG00000041075.8) protein_coding-promoter-TSS (ENSMUSG00000041075.8) 80 ENSMUSG00000041075.8 ENSMUSG00000041075 ENSMUST00000114246 Fzd7 protein_coding Interval_55370 chr14 85882956 85883635 + 0 NA Intergenic Intergenic 228091 ENSMUSG00000115653.1 ENSMUSG00000115653 ENSMUST00000228318 Gm49059 processed_pseudogene Interval_147818 chr7 73759817 73760315 + 0 NA intron (ENSMUSG00000078670.3, intron 1 of 2) protein_coding-intron (ENSMUSG00000078670.3, intron 1 of 2) 5477 ENSMUSG00000108412.1 ENSMUSG00000108412 ENSMUST00000206640 Gm45005 TEC Interval_49123 chr13 108254284 108254573 + 0 NA intron (ENSMUSG00000021696.9, intron 1 of 7) protein_coding-intron (ENSMUSG00000021696.9, intron 1 of 7) -20873 ENSMUSG00000114507.1 ENSMUSG00000114507 ENSMUST00000225536 Gm30747 processed_pseudogene Interval_72006 chr17 27545865 27547350 + 0 NA exon (ENSMUSG00000116657.1, exon 1 of 1) antisense-exon (ENSMUSG00000116657.1, exon 1 of 1) -6365 ENSMUSG00000116548.1 ENSMUSG00000116548 ENSMUST00000231925 Gm49773 TEC Interval_73074 chr17 34623092 34623384 + 0 NA intron (ENSMUSG00000015474.16, intron 3 of 6) protein_coding-intron (ENSMUSG00000015474.16, intron 5 of 8) 3910 ENSMUSG00000015474.16 ENSMUSG00000015474 ENSMUST00000169287 Ppt2 protein_coding Interval_153869 chr8 10346645 10347033 + 0 NA intron (ENSMUSG00000039057.11, intron 4 of 5) protein_coding-intron (ENSMUSG00000039057.11, intron 3 of 34) 97551 ENSMUSG00000039057.11 ENSMUSG00000039057 ENSMUST00000042103 Myo16 protein_coding Interval_94032 chr2 81185617 81186022 + 0 NA Intergenic Intergenic -201630 ENSMUSG00000065261.1 ENSMUSG00000065261 ENSMUST00000083327 Gm23452 snRNA Interval_113186 chr4 49265387 49266506 + 0 NA intron (ENSMUSG00000063446.4, intron 2 of 3) protein_coding-intron (ENSMUSG00000063446.4, intron 2 of 7) -23352 ENSMUSG00000064782.1 ENSMUSG00000064782 ENSMUST00000082848 Gm22685 snRNA Interval_136500 chr6 54967781 54968062 + 0 NA intron (ENSMUSG00000038058.14, intron 1 of 11) protein_coding-intron (ENSMUSG00000038058.14, intron 1 of 11) -6730 ENSMUSG00000077501.1 ENSMUSG00000077501 ENSMUST00000104313 Gm24230 snoRNA Interval_6569 chr1 117203907 117204704 + 0 NA Intergenic Intergenic 189227 ENSMUSG00000101154.1 ENSMUSG00000101154 ENSMUST00000189740 Gm17777 processed_pseudogene Interval_4496 chr1 74569887 74571462 + 0 NA exon (ENSMUSG00000026135.17, exon 7 of 9) protein_coding-exon (ENSMUSG00000026135.17, exon 7 of 9) 10247 ENSMUSG00000026173.15 ENSMUSG00000026173 ENSMUST00000135111 Plcd4 protein_coding Interval_83607 chr18 90539717 90540163 + 0 NA TTS (ENSMUSG00000024614.7) protein_coding-TTS (ENSMUSG00000024614.7) 9004 ENSMUSG00000117747.1 ENSMUSG00000117747 ENSMUST00000236589 Gm50438 transcribed_processed_pseudogene Interval_64038 chr16 5931597 5932049 + 0 NA intron (ENSMUSG00000008658.16, intron 1 of 11) protein_coding-intron (ENSMUSG00000008658.16, intron 1 of 11) -43762 ENSMUSG00000101481.1 ENSMUSG00000101481 ENSMUST00000190515 1700123O21Rik sense_intronic Interval_36795 chr12 54102396 54102883 + 0 NA intron (ENSMUSG00000112549.1, intron 3 of 4) lincRNA-intron (ENSMUSG00000112549.1, intron 3 of 4) 4246 ENSMUSG00000112549.1 ENSMUSG00000112549 ENSMUST00000219480 Gm35818 lincRNA Interval_131967 chr5 141404829 141405244 + 0 NA intron (ENSMUSG00000039683.16, intron 1 of 9) protein_coding-intron (ENSMUSG00000039683.16, intron 1 of 44) -24110 ENSMUSG00000084934.1 ENSMUSG00000084934 ENSMUST00000153879 Gm16035 antisense Interval_160443 chr8 109535171 109537289 + 0 NA intron (ENSMUSG00000031727.8, intron 14 of 19) protein_coding-intron (ENSMUSG00000031727.8, intron 15 of 20) 15894 ENSMUSG00000037993.8 ENSMUSG00000037993 ENSMUST00000212667 Dhx38 protein_coding Interval_26382 chr11 57521324 57521609 + 0 NA intron (ENSMUSG00000020522.13, intron 1 of 2) protein_coding-intron (ENSMUSG00000020522.13, intron 1 of 2) 2780 ENSMUSG00000020522.13 ENSMUSG00000020522 ENSMUST00000108848 Mfap3 protein_coding Interval_40053 chr12 100887798 100888464 + 0 NA intron (ENSMUSG00000047415.12, intron 1 of 2) protein_coding-intron (ENSMUSG00000047415.12, intron 1 of 2) -9144 ENSMUSG00000118530.1 ENSMUSG00000118530 ENSMUST00000238798 AC126262.1 processed_pseudogene Interval_35479 chr12 22961142 22961447 + 0 NA promoter-TSS (ENSMUSG00000113670.1) transcribed_unprocessed_pseudogene-promoter-TSS (ENSMUSG00000113670.1) -988 ENSMUSG00000113670.1 ENSMUSG00000113670 ENSMUST00000222206 Gm49686 transcribed_unprocessed_pseudogene Interval_172341 chrX 13213850 13215084 + 0 NA Intergenic Intergenic 1342 ENSMUSG00000065813.1 ENSMUSG00000065813 ENSMUST00000083879 n-R5s3 rRNA Interval_73295 chr17 36020773 36021054 + 0 NA promoter-TSS (ENSMUSG00000053835.17) protein_coding-promoter-TSS (ENSMUSG00000053835.17) -388 ENSMUSG00000053835.17 ENSMUSG00000053835 ENSMUST00000174063 H2-T24 protein_coding Interval_17573 chr10 77851458 77853309 + 0 NA promoter-TSS (ENSMUSG00000071195.4) protein_coding-promoter-TSS (ENSMUSG00000071195.4) -479 ENSMUSG00000071195.4 ENSMUSG00000071195 ENSMUST00000217996 Gm10318 protein_coding Interval_63749 chr15 103227690 103227925 + 0 NA intron (ENSMUSG00000009575.14, intron 1 of 4) protein_coding-intron (ENSMUSG00000009575.14, intron 1 of 4) -12441 ENSMUSG00000009575.14 ENSMUSG00000009575 ENSMUST00000127191 Cbx5 protein_coding Interval_25121 chr11 44305739 44306702 + 0 NA Intergenic Intergenic -39011 ENSMUSG00000086738.1 ENSMUSG00000086738 ENSMUST00000145584 Gm12154 lincRNA Interval_128616 chr5 114323204 114324402 + 0 NA intron (ENSMUSG00000066952.11, intron 5 of 30) protein_coding-intron (ENSMUSG00000066952.11, intron 5 of 28) 8862 ENSMUSG00000066952.11 ENSMUSG00000066952 ENSMUST00000125230 Myo1h protein_coding Interval_92057 chr2 52915496 52916920 + 0 NA intron (ENSMUSG00000036053.17, intron 1 of 26) protein_coding-intron (ENSMUSG00000036053.17, intron 1 of 26) 58348 ENSMUSG00000036053.17 ENSMUSG00000036053 ENSMUST00000050719 Fmnl2 protein_coding Interval_77536 chr17 91068127 91068375 + 0 NA intron (ENSMUSG00000024109.18, intron 1 of 20) protein_coding-intron (ENSMUSG00000024109.18, intron 1 of 20) -20155 ENSMUSG00000105477.1 ENSMUSG00000105477 ENSMUST00000198489 Gm47307 miRNA Interval_22149 chr11 6628659 6629026 + 0 NA Intergenic Intergenic -2775 ENSMUSG00000000384.15 ENSMUSG00000000384 ENSMUST00000144463 Tbrg4 protein_coding Interval_109011 chr3 134987984 134988179 + 0 NA Intergenic Intergenic 16624 ENSMUSG00000104539.1 ENSMUSG00000104539 ENSMUST00000197626 Gm43035 processed_pseudogene Interval_57953 chr15 25724353 25725260 + 0 NA TTS (ENSMUSG00000022272.17) protein_coding-TTS (ENSMUSG00000022272.17) 43008 ENSMUSG00000089639.1 ENSMUSG00000089639 ENSMUST00000161524 Gm2862 processed_pseudogene Interval_165350 chr9 46498209 46499458 + 0 NA intron (ENSMUSG00000111115.1, intron 1 of 4) lincRNA-intron (ENSMUSG00000111115.1, intron 1 of 4) 6240 ENSMUSG00000111115.1 ENSMUSG00000111115 ENSMUST00000214085 Gm47144 lincRNA Interval_164551 chr9 38486738 38486966 + 0 NA promoter-TSS (ENSMUSG00000039962.3) protein_coding-promoter-TSS (ENSMUSG00000039962.3) -233 ENSMUSG00000039962.3 ENSMUSG00000039962 ENSMUST00000045493 Olfr906 protein_coding Interval_21565 chr10 129995913 129996274 + 0 NA Intergenic Intergenic -7763 ENSMUSG00000107423.1 ENSMUSG00000107423 ENSMUST00000203970 Gm43977 unprocessed_pseudogene Interval_142737 chr6 145249344 145250973 + 0 NA promoter-TSS (ENSMUSG00000030265.14) protein_coding-promoter-TSS (ENSMUSG00000030265.14) 81 ENSMUSG00000030265.14 ENSMUSG00000030265 ENSMUST00000155145 Kras protein_coding Interval_18079 chr10 82149379 82149979 + 0 NA intron (ENSMUSG00000078435.5, intron 2 of 3) protein_coding-intron (ENSMUSG00000078435.5, intron 1 of 2) -7422 ENSMUSG00000112922.1 ENSMUSG00000112922 ENSMUST00000219013 Gm47572 TEC Interval_84865 chr19 18255285 18256162 + 0 NA Intergenic Intergenic -49928 ENSMUSG00000117774.1 ENSMUSG00000117774 ENSMUST00000237977 Gm18610 processed_pseudogene Interval_91263 chr2 36940537 36940795 + 0 NA Intergenic Intergenic 3545 ENSMUSG00000070943.3 ENSMUSG00000070943 ENSMUST00000095021 Olfr356 protein_coding Interval_56039 chr14 105084949 105086241 + 0 NA Intergenic Intergenic 29081 ENSMUSG00000091509.7 ENSMUSG00000091509 ENSMUST00000164319 Gm17066 processed_transcript Interval_32087 chr11 105194168 105195430 + 0 NA intron (ENSMUSG00000020694.17, intron 2 of 5) protein_coding-intron (ENSMUSG00000020694.17, intron 2 of 20) -13366 ENSMUSG00000099681.1 ENSMUSG00000099681 ENSMUST00000190120 1700052K11Rik antisense Interval_139345 chr6 99191457 99191761 + 0 NA intron (ENSMUSG00000030067.17, intron 4 of 4) protein_coding-intron (ENSMUSG00000030067.17, intron 2 of 3) -115552 ENSMUSG00000105902.1 ENSMUSG00000105902 ENSMUST00000200105 Gm49348 miRNA Interval_111341 chr4 19420391 19420582 + 0 NA intron (ENSMUSG00000056494.7, intron 11 of 17) protein_coding-intron (ENSMUSG00000056494.7, intron 11 of 17) 94293 ENSMUSG00000089090.1 ENSMUSG00000089090 ENSMUST00000158465 Gm25655 misc_RNA Interval_44881 chr13 49328599 49329134 + 0 NA Intergenic Intergenic -19626 ENSMUSG00000037946.11 ENSMUSG00000037946 ENSMUST00000110086 Fgd3 protein_coding Interval_55518 chr14 90093435 90093902 + 0 NA Intergenic Intergenic -7776 ENSMUSG00000115313.1 ENSMUSG00000115313 ENSMUST00000228325 Gm48941 lincRNA Interval_98972 chr2 156420421 156422083 + 0 NA exon (ENSMUSG00000027624.20, exon 1 of 22) protein_coding-exon (ENSMUSG00000027624.20, exon 1 of 22) -10078 ENSMUSG00000061272.8 ENSMUSG00000061272 ENSMUST00000117690 Gm14173 processed_pseudogene Interval_57759 chr15 19081184 19081428 + 0 NA Intergenic Intergenic -14737 ENSMUSG00000115815.1 ENSMUSG00000115815 ENSMUST00000226382 Gm8328 processed_pseudogene Interval_158988 chr8 88495225 88495729 + 0 NA Intergenic Intergenic -64556 ENSMUSG00000110187.1 ENSMUSG00000110187 ENSMUST00000209918 Gm45496 TEC Interval_123117 chr5 29798785 29799170 + 0 NA intron (ENSMUSG00000029131.14, intron 8 of 8) protein_coding-intron (ENSMUSG00000029131.14, intron 8 of 8) -3940 ENSMUSG00000106558.1 ENSMUSG00000106558 ENSMUST00000197149 Gm5552 processed_pseudogene Interval_48945 chr13 105293445 105294851 + 0 NA intron (ENSMUSG00000021720.11, intron 1 of 3) protein_coding-intron (ENSMUSG00000021720.11, intron 1 of 7) 254 ENSMUSG00000021720.11 ENSMUSG00000021720 ENSMUST00000224749 Rnf180 protein_coding Interval_49841 chr13 117002439 117003038 + 0 NA intron (ENSMUSG00000021725.9, intron 2 of 24) protein_coding-intron (ENSMUSG00000021725.9, intron 3 of 26) 22535 ENSMUSG00000021725.9 ENSMUSG00000021725 ENSMUST00000223833 Parp8 protein_coding Interval_31378 chr11 100333784 100334504 + 0 NA promoter-TSS (ENSMUSG00000017165.1) protein_coding-promoter-TSS (ENSMUSG00000017165.1) -263 ENSMUSG00000017165.1 ENSMUSG00000017165 ENSMUST00000017309 Gast protein_coding Interval_66345 chr16 33278730 33279190 + 0 NA intron (ENSMUSG00000022808.5, intron 6 of 12) protein_coding-intron (ENSMUSG00000022808.5, intron 6 of 13) 27518 ENSMUSG00000022808.5 ENSMUSG00000022808 ENSMUST00000231242 Snx4 protein_coding Interval_112917 chr4 46041099 46041332 + 0 NA intron (ENSMUSG00000028328.13, intron 1 of 3) protein_coding-intron (ENSMUSG00000028328.13, intron 1 of 9) 2006 ENSMUSG00000028328.13 ENSMUSG00000028328 ENSMUST00000155730 Tmod1 protein_coding Interval_137066 chr6 67112917 67114276 + 0 NA Intergenic Intergenic -2081 ENSMUSG00000097603.3 ENSMUSG00000097603 ENSMUST00000054470 A430010J10Rik processed_transcript Interval_25234 chr11 45745788 45746497 + 0 NA Intergenic Intergenic -61945 ENSMUSG00000086686.1 ENSMUSG00000086686 ENSMUST00000137002 F630206G17Rik processed_transcript Interval_75595 chr17 69176783 69177244 + 0 NA intron (ENSMUSG00000024044.19, intron 1 of 19) protein_coding-intron (ENSMUSG00000024044.19, intron 1 of 21) 50013 ENSMUSG00000024044.19 ENSMUSG00000024044 ENSMUST00000223565 Epb41l3 protein_coding Interval_80447 chr18 42295310 42295725 + 0 NA intron (ENSMUSG00000024491.16, intron 3 of 20) protein_coding-intron (ENSMUSG00000024491.16, intron 3 of 19) -3604 ENSMUSG00000024491.16 ENSMUSG00000024491 ENSMUST00000237798 Rbm27 protein_coding Interval_121351 chr4 155178232 155178973 + 0 NA intron (ENSMUSG00000029050.15, intron 2 of 7) protein_coding-intron (ENSMUSG00000029050.15, intron 1 of 6) 9694 ENSMUSG00000029050.15 ENSMUSG00000029050 ENSMUST00000030917 Ski protein_coding Interval_156875 chr8 61390699 61391393 + 0 NA intron (ENSMUSG00000031642.9, intron 11 of 11) protein_coding-intron (ENSMUSG00000031642.9, intron 11 of 11) -9659 ENSMUSG00000109610.1 ENSMUSG00000109610 ENSMUST00000210343 Gm7432 processed_pseudogene Interval_144622 chr7 27184903 27185512 + 0 NA Intergenic Intergenic -4121 ENSMUSG00000095538.1 ENSMUSG00000095538 ENSMUST00000154724 Gm21983 protein_coding Interval_40574 chr12 105802272 105802483 + 0 NA intron (ENSMUSG00000021111.15, intron 3 of 7) protein_coding-intron (ENSMUSG00000021111.15, intron 3 of 22) -26690 ENSMUSG00000021111.15 ENSMUSG00000021111 ENSMUST00000172089 Papola protein_coding Interval_80326 chr18 39262858 39263090 + 0 NA intron (ENSMUSG00000086312.1, intron 2 of 2) protein_coding-intron (ENSMUSG00000036452.18, intron 17 of 22) -28461 ENSMUSG00000036452.18 ENSMUSG00000036452 ENSMUST00000133247 Arhgap26 protein_coding Interval_165438 chr9 47910247 47910605 + 0 NA Intergenic Intergenic 37735 ENSMUSG00000111668.1 ENSMUSG00000111668 ENSMUST00000215015 Gm47213 processed_pseudogene Interval_43843 chr13 37530600 37530785 + 0 NA Intergenic Intergenic -17086 ENSMUSG00000114665.1 ENSMUSG00000114665 ENSMUST00000225390 Lncbate6 lincRNA Interval_128136 chr5 111222590 111223732 + 0 NA exon (ENSMUSG00000033209.17, exon 8 of 24) protein_coding-exon (ENSMUSG00000033209.17, exon 8 of 24) 26021 ENSMUSG00000105027.1 ENSMUSG00000105027 ENSMUST00000197532 Gm43676 TEC Interval_93948 chr2 79839283 79839671 + 0 NA intron (ENSMUSG00000059173.19, intron 13 of 15) protein_coding-intron (ENSMUSG00000059173.19, intron 14 of 15) 52886 ENSMUSG00000034683.12 ENSMUSG00000034683 ENSMUST00000144432 Ppp1r1c protein_coding Interval_120179 chr4 143206261 143206439 + 0 NA intron (ENSMUSG00000057637.13, intron 1 of 3) protein_coding-intron (ENSMUSG00000057637.13, intron 1 of 9) 2285 ENSMUSG00000087903.1 ENSMUSG00000087903 ENSMUST00000157278 Gm22039 snoRNA Interval_23768 chr11 26054797 26055094 + 0 NA intron (ENSMUSG00000032985.15, intron 1 of 5) protein_coding-intron (ENSMUSG00000032985.15, intron 1 of 6) -147295 ENSMUSG00000099015.1 ENSMUSG00000099015 ENSMUST00000185114 Mir6372 miRNA Interval_79663 chr18 34330461 34331545 + 0 NA promoter-TSS (ENSMUSG00000014504.16) protein_coding-promoter-TSS (ENSMUSG00000014504.16) -173 ENSMUSG00000014504.16 ENSMUSG00000014504 ENSMUST00000142010 Srp19 protein_coding Interval_161550 chr8 121134050 121134629 + 0 NA intron (ENSMUSG00000092329.1, intron 1 of 15) protein_coding-intron (ENSMUSG00000092329.1, intron 1 of 15) 6399 ENSMUSG00000097084.1 ENSMUSG00000097084 ENSMUST00000181609 Foxl1 protein_coding Interval_157340 chr8 69664311 69665807 + 0 NA TTS (ENSMUSG00000091764.3) protein_coding-TTS (ENSMUSG00000091764.3) 10567 ENSMUSG00000091764.3 ENSMUSG00000091764 ENSMUST00000169125 Zfp964 protein_coding Interval_2358 chr1 38430428 38430645 + 0 NA intron (ENSMUSG00000037138.18, intron 5 of 22) protein_coding-intron (ENSMUSG00000037138.18, intron 5 of 7) 45587 ENSMUSG00000087131.7 ENSMUSG00000087131 ENSMUST00000131663 Gm16152 antisense Interval_89914 chr2 26429802 26430476 + 0 NA promoter-TSS (ENSMUSG00000026924.17) protein_coding-promoter-TSS (ENSMUSG00000026924.17) -627 ENSMUSG00000026924.17 ENSMUSG00000026924 ENSMUST00000155252 Sec16a protein_coding Interval_31424 chr11 100589201 100589519 + 0 NA intron (ENSMUSG00000014195.16, intron 9 of 13) protein_coding-intron (ENSMUSG00000014195.16, intron 9 of 13) 13836 ENSMUSG00000006782.16 ENSMUSG00000006782 ENSMUST00000147403 Cnp protein_coding Interval_121350 chr4 155172967 155174253 + 0 NA intron (ENSMUSG00000029050.15, intron 2 of 7) protein_coding-intron (ENSMUSG00000029050.15, intron 1 of 6) 14686 ENSMUSG00000029050.15 ENSMUSG00000029050 ENSMUST00000030917 Ski protein_coding Interval_4528 chr1 74802913 74803727 + 0 NA exon (ENSMUSG00000026167.14, exon 4 of 4) protein_coding-exon (ENSMUSG00000026167.14, exon 4 of 4) 9957 ENSMUSG00000026167.14 ENSMUSG00000026167 ENSMUST00000187238 Wnt10a protein_coding Interval_44095 chr13 40859836 40861253 + 0 NA exon (ENSMUSG00000021360.16, exon 1 of 3) protein_coding-exon (ENSMUSG00000021360.16, exon 1 of 3) -5247 ENSMUSG00000093269.1 ENSMUSG00000093269 ENSMUST00000175528 Mir5124a miRNA Interval_93280 chr2 71655240 71656672 + 0 NA Intergenic Intergenic -63461 ENSMUSG00000064263.6 ENSMUSG00000064263 ENSMUST00000079720 Platr26 lincRNA Interval_7073 chr1 125419364 125419647 + 0 NA intron (ENSMUSG00000026341.16, intron 1 of 10) protein_coding-intron (ENSMUSG00000026341.16, intron 2 of 12) 15976 ENSMUSG00000026341.16 ENSMUSG00000026341 ENSMUST00000188827 Actr3 protein_coding Interval_75281 chr17 65670533 65670908 + 0 NA intron (ENSMUSG00000056515.9, intron 5 of 6) protein_coding-intron (ENSMUSG00000056515.9, intron 5 of 6) -9142 ENSMUSG00000117114.1 ENSMUSG00000117114 ENSMUST00000233942 Gm49867 processed_pseudogene Interval_30153 chr11 89936975 89937405 + 0 NA Intergenic Intergenic 65704 ENSMUSG00000020553.8 ENSMUSG00000020553 ENSMUST00000020864 Pctp protein_coding Interval_108089 chr3 121447547 121448914 + 0 NA intron (ENSMUSG00000053931.11, intron 1 of 2) protein_coding-intron (ENSMUSG00000053931.11, intron 1 of 6) -8883 ENSMUSG00000053931.11 ENSMUSG00000053931 ENSMUST00000199499 Cnn3 protein_coding Interval_140872 chr6 122495553 122495801 + 0 NA intron (ENSMUSG00000040649.15, intron 1 of 1) protein_coding-intron (ENSMUSG00000040649.15, intron 1 of 1) -9238 ENSMUSG00000040649.15 ENSMUSG00000040649 ENSMUST00000204045 Rimklb protein_coding Interval_75426 chr17 66490077 66490389 + 0 NA Intergenic Intergenic 29437 ENSMUSG00000023460.13 ENSMUSG00000023460 ENSMUST00000146279 Rab12 protein_coding Interval_15086 chr10 42476812 42478852 + 0 NA intron (ENSMUSG00000038302.14, intron 1 of 13) protein_coding-intron (ENSMUSG00000038302.14, intron 1 of 12) 448 ENSMUSG00000038302.14 ENSMUSG00000038302 ENSMUST00000149832 Afg1l protein_coding Interval_114936 chr4 87258052 87258267 + 0 NA Intergenic Intergenic -27692 ENSMUSG00000037996.17 ENSMUSG00000037996 ENSMUST00000155361 Slc24a2 protein_coding Interval_28939 chr11 79398243 79398961 + 0 NA intron (ENSMUSG00000020716.16, intron 5 of 30) protein_coding-intron (ENSMUSG00000020716.16, intron 5 of 57) -26372 ENSMUSG00000082304.1 ENSMUSG00000082304 ENSMUST00000119771 Gm11198 processed_pseudogene Interval_133745 chr6 11056098 11057099 + 0 NA Intergenic Intergenic -82220 ENSMUSG00000107948.2 ENSMUSG00000107948 ENSMUST00000205141 AA545190 lincRNA Interval_72411 chr17 29667842 29668669 + 0 NA intron (ENSMUSG00000024019.18, intron 2 of 9) protein_coding-intron (ENSMUSG00000024019.18, intron 2 of 23) 7641 ENSMUSG00000024019.18 ENSMUSG00000024019 ENSMUST00000234666 Cmtr1 protein_coding Interval_145235 chr7 30828694 30830024 + 0 NA Intergenic Intergenic -8382 ENSMUSG00000051314.11 ENSMUSG00000051314 ENSMUST00000186059 Ffar2 protein_coding Interval_154196 chr8 13338005 13339600 + 0 NA promoter-TSS (ENSMUSG00000038482.11) protein_coding-promoter-TSS (ENSMUSG00000038482.11) -19 ENSMUSG00000038482.11 ENSMUSG00000038482 ENSMUST00000209945 Tfdp1 protein_coding Interval_160522 chr8 110266108 110267514 + 0 NA promoter-TSS (ENSMUSG00000059854.8) protein_coding-promoter-TSS (ENSMUSG00000059854.8) -180 ENSMUSG00000059854.8 ENSMUSG00000059854 ENSMUST00000212034 Hydin protein_coding Interval_103513 chr3 45991875 45992165 + 0 NA Intergenic Intergenic 13442 ENSMUSG00000089584.1 ENSMUSG00000089584 ENSMUST00000158959 Gm23337 snRNA Interval_125273 chr5 65822793 65824063 + 0 NA intron (ENSMUSG00000037795.14, intron 18 of 19) protein_coding-intron (ENSMUSG00000037795.14, intron 16 of 17) -29904 ENSMUSG00000106713.1 ENSMUSG00000106713 ENSMUST00000201573 Gm42645 TEC Interval_157022 chr8 64568087 64569639 + 0 NA Intergenic Intergenic 53134 ENSMUSG00000037852.8 ENSMUSG00000037852 ENSMUST00000211312 Cpe protein_coding Interval_60512 chr15 74556109 74556567 + 0 NA intron (ENSMUSG00000034730.17, intron 17 of 30) protein_coding-intron (ENSMUSG00000034730.17, intron 17 of 30) -7483 ENSMUSG00000093340.1 ENSMUSG00000093340 ENSMUST00000175599 Gm26117 miRNA Interval_23205 chr11 20553174 20553602 + 0 NA intron (ENSMUSG00000049800.13, intron 1 of 1) protein_coding-intron (ENSMUSG00000049800.13, intron 1 of 1) 10135 ENSMUSG00000049800.13 ENSMUSG00000049800 ENSMUST00000109585 Sertad2 protein_coding Interval_31837 chr11 103237479 103238288 + 0 NA exon (ENSMUSG00000020941.7, exon 4 of 4) protein_coding-exon (ENSMUSG00000020941.7, exon 4 of 4) 2251 ENSMUSG00000020941.7 ENSMUSG00000020941 ENSMUST00000152677 Map3k14 protein_coding Interval_17160 chr10 73034217 73034406 + 0 NA intron (ENSMUSG00000111994.1, intron 1 of 4) lincRNA-intron (ENSMUSG00000111994.1, intron 1 of 2) 52394 ENSMUSG00000111994.1 ENSMUSG00000111994 ENSMUST00000219920 A330049N07Rik lincRNA Interval_63894 chr16 4366946 4367474 + 0 NA intron (ENSMUSG00000005580.11, intron 3 of 11) protein_coding-intron (ENSMUSG00000005580.11, intron 1 of 9) -46530 ENSMUSG00000084304.1 ENSMUSG00000084304 ENSMUST00000120290 Gm6142 processed_pseudogene Interval_20467 chr10 117782691 117782984 + 0 NA promoter-TSS (ENSMUSG00000052798.13) protein_coding-promoter-TSS (ENSMUSG00000052798.13) 9814 ENSMUSG00000052798.13 ENSMUSG00000052798 ENSMUST00000220203 Nup107 protein_coding Interval_85339 chr19 24969116 24970187 + 0 NA Intergenic Intergenic -27284 ENSMUSG00000095097.1 ENSMUSG00000095097 ENSMUST00000083233 Gm23658 snoRNA Interval_170868 chr9 111356298 111356519 + 0 NA exon (ENSMUSG00000062296.8, exon 9 of 9) protein_coding-exon (ENSMUSG00000062296.8, exon 9 of 9) -18480 ENSMUSG00000062296.8 ENSMUSG00000062296 ENSMUST00000197650 Trank1 protein_coding Interval_65274 chr16 21175088 21175526 + 0 NA Intergenic Intergenic -21307 ENSMUSG00000090356.2 ENSMUSG00000090356 ENSMUST00000170665 Teddm3 protein_coding Interval_120301 chr4 145286863 145287433 + 0 NA intron (ENSMUSG00000028602.12, intron 8 of 12) protein_coding-intron (ENSMUSG00000028602.12, intron 8 of 12) 28016 ENSMUSG00000028602.12 ENSMUSG00000028602 ENSMUST00000123027 Tnfrsf8 protein_coding Interval_174351 chrX 147241836 147242239 + 0 NA Intergenic Intergenic 83827 ENSMUSG00000065450.1 ENSMUSG00000065450 ENSMUST00000083516 Mir448 miRNA Interval_50601 chr14 16364286 16366352 + 0 NA exon (ENSMUSG00000017485.11, exon 1 of 36) protein_coding-exon (ENSMUSG00000017485.11, exon 1 of 36) 949 ENSMUSG00000114243.1 ENSMUSG00000114243 ENSMUST00000225819 Gm48163 antisense Interval_149805 chr7 101670871 101671340 + 0 NA intron (ENSMUSG00000001829.17, intron 2 of 16) protein_coding-intron (ENSMUSG00000001829.17, intron 2 of 15) 7332 ENSMUSG00000001829.17 ENSMUSG00000001829 ENSMUST00000150832 Clpb protein_coding Interval_102882 chr3 32510079 32511466 + 0 NA promoter-TSS (ENSMUSG00000027667.13) protein_coding-promoter-TSS (ENSMUSG00000027667.13) -124 ENSMUSG00000027667.13 ENSMUSG00000027667 ENSMUST00000193290 Zfp639 protein_coding Interval_43664 chr13 34746330 34747667 + 0 NA exon (ENSMUSG00000038246.7, exon 2 of 2) protein_coding-exon (ENSMUSG00000038246.7, exon 2 of 2) 7386 ENSMUSG00000038246.7 ENSMUSG00000038246 ENSMUST00000221037 Fam50b protein_coding Interval_32926 chr11 113172376 113173497 + 0 NA intron (ENSMUSG00000087259.7, intron 1 of 3) lincRNA-intron (ENSMUSG00000087259.7, intron 1 of 2) 141 ENSMUSG00000087259.7 ENSMUSG00000087259 ENSMUST00000150712 2610035D17Rik lincRNA Interval_72017 chr17 27582794 27583744 + 0 NA promoter-TSS (ENSMUSG00000024213.14) protein_coding-promoter-TSS (ENSMUSG00000024213.14) 13946 ENSMUSG00000024213.14 ENSMUSG00000024213 ENSMUST00000146321 Nudt3 protein_coding Interval_110892 chr4 9626413 9627540 + 0 NA intron (ENSMUSG00000028207.18, intron 3 of 5) protein_coding-intron (ENSMUSG00000028207.18, intron 3 of 4) 16741 ENSMUSG00000028207.18 ENSMUSG00000028207 ENSMUST00000130617 Asph protein_coding Interval_71959 chr17 27228592 27231358 + 0 NA Intergenic Intergenic -12497 ENSMUSG00000118503.1 ENSMUSG00000118503 ENSMUST00000239096 AC141882.1 unitary_pseudogene Interval_46337 chr13 64045911 64046416 + 0 NA Intergenic Intergenic 43038 ENSMUSG00000033122.14 ENSMUSG00000033122 ENSMUST00000222810 Hsd17b3 protein_coding Interval_88385 chr2 4623420 4624417 + 0 NA TTS (ENSMUSG00000039449.14) protein_coding-TTS (ENSMUSG00000039449.14) 28163 ENSMUSG00000039449.14 ENSMUSG00000039449 ENSMUST00000144650 Prpf18 protein_coding Interval_49222 chr13 109599504 109601522 + 0 NA intron (ENSMUSG00000021699.17, intron 1 of 14) protein_coding-intron (ENSMUSG00000021699.17, intron 1 of 14) 275769 ENSMUSG00000076946.2 ENSMUSG00000076946 ENSMUST00000103758 Mir582 miRNA Interval_152546 chr7 134174288 134174632 + 0 NA intron (ENSMUSG00000054555.11, intron 1 of 5) protein_coding-intron (ENSMUSG00000054555.11, intron 1 of 22) 54860 ENSMUSG00000050066.6 ENSMUSG00000050066 ENSMUST00000206697 A130023I24Rik processed_transcript Interval_126477 chr5 88808154 88808419 + 0 NA intron (ENSMUSG00000105640.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000105640.1, intron 1 of 1) -3063 ENSMUSG00000106305.1 ENSMUSG00000106305 ENSMUST00000199360 Gm42911 processed_pseudogene Interval_13608 chr10 20170146 20171104 + 0 NA promoter-TSS (ENSMUSG00000019996.17) protein_coding-promoter-TSS (ENSMUSG00000019996.17) -363 ENSMUSG00000019996.17 ENSMUSG00000019996 ENSMUST00000216308 Map7 protein_coding Interval_53787 chr14 61743490 61745322 + 0 NA Intergenic Intergenic 60896 ENSMUSG00000104187.1 ENSMUSG00000104187 ENSMUST00000194021 Gm37820 TEC Interval_134413 chr6 28440964 28441159 + 0 NA Intergenic Intergenic 5314 ENSMUSG00000029706.15 ENSMUSG00000029706 ENSMUST00000174036 Pax4 protein_coding Interval_49050 chr13 107419383 107419963 + 0 NA Intergenic Intergenic -4944 ENSMUSG00000049233.7 ENSMUSG00000049233 ENSMUST00000061241 Apoo-ps processed_pseudogene Interval_55075 chr14 77728495 77730029 + 0 NA Intergenic Intergenic -51712 ENSMUSG00000115257.1 ENSMUSG00000115257 ENSMUST00000227970 Gm30467 lincRNA Interval_49260 chr13 109907645 109907875 + 0 NA intron (ENSMUSG00000021699.17, intron 7 of 15) protein_coding-intron (ENSMUSG00000021699.17, intron 6 of 14) 3951 ENSMUSG00000084651.1 ENSMUSG00000084651 ENSMUST00000122702 Mir1904 miRNA Interval_134406 chr6 28399662 28400018 + 0 NA Intergenic Intergenic -23869 ENSMUSG00000020440.13 ENSMUSG00000020440 ENSMUST00000202028 Arf5 protein_coding Interval_96175 chr2 120295909 120296594 + 0 NA Intergenic Intergenic -7054 ENSMUSG00000070719.4 ENSMUSG00000070719 ENSMUST00000094665 Pla2g4d protein_coding Interval_23348 chr11 21659144 21659539 + 0 NA intron (ENSMUSG00000020319.9, intron 2 of 8) protein_coding-intron (ENSMUSG00000020319.9, intron 2 of 17) 24715 ENSMUSG00000083761.1 ENSMUSG00000083761 ENSMUST00000119107 Pgam1-ps1 processed_pseudogene Interval_165186 chr9 45103140 45103355 + 0 NA promoter-TSS (ENSMUSG00000048534.7) protein_coding-promoter-TSS (ENSMUSG00000048534.7) 453 ENSMUSG00000048534.7 ENSMUSG00000048534 ENSMUST00000215098 Jaml protein_coding Interval_47767 chr13 92482245 92484292 + 0 NA intron (ENSMUSG00000034334.8, intron 1 of 4) protein_coding-intron (ENSMUSG00000034334.8, intron 1 of 5) 747 ENSMUSG00000034334.8 ENSMUSG00000034334 ENSMUST00000040106 Fam151b protein_coding Interval_114349 chr4 74080571 74080846 + 0 NA intron (ENSMUSG00000049122.17, intron 2 of 14) protein_coding-intron (ENSMUSG00000049122.17, intron 2 of 13) 36320 ENSMUSG00000081048.1 ENSMUSG00000081048 ENSMUST00000122355 Gm11760 processed_pseudogene Interval_94674 chr2 93203763 93204325 + 0 NA TTS (ENSMUSG00000027217.13) protein_coding-TTS (ENSMUSG00000027217.13) 16496 ENSMUSG00000068735.14 ENSMUSG00000068735 ENSMUST00000143164 Trp53i11 protein_coding Interval_108156 chr3 122033132 122033793 + 0 NA Intergenic Intergenic 9632 ENSMUSG00000104869.1 ENSMUSG00000104869 ENSMUST00000197868 Gm42544 TEC Interval_38384 chr12 78405074 78408056 + 0 NA intron (ENSMUSG00000047454.12, intron 3 of 22) protein_coding-intron (ENSMUSG00000047454.12, intron 3 of 23) 8430 ENSMUSG00000112090.1 ENSMUSG00000112090 ENSMUST00000218155 Gm48231 TEC Interval_103912 chr3 54886190 54887063 + 0 NA Intergenic Intergenic 28405 ENSMUSG00000056306.5 ENSMUSG00000056306 ENSMUST00000070342 Sertm1 protein_coding Interval_25162 chr11 44662847 44663234 + 0 NA promoter-TSS (ENSMUSG00000085784.1) antisense-promoter-TSS (ENSMUSG00000085784.1) -364 ENSMUSG00000085784.1 ENSMUSG00000085784 ENSMUST00000130493 Gm12158 antisense Interval_130428 chr5 127536841 127537121 + 0 NA intron (ENSMUSG00000034324.16, intron 5 of 8) protein_coding-intron (ENSMUSG00000034324.16, intron 5 of 8) -16273 ENSMUSG00000034324.16 ENSMUSG00000034324 ENSMUST00000145748 Tmem132c protein_coding Interval_45854 chr13 58557279 58558121 + 0 NA intron (ENSMUSG00000021553.14, intron 1 of 3) protein_coding-intron (ENSMUSG00000021553.14, intron 17 of 17) 11672 ENSMUSG00000114234.1 ENSMUSG00000114234 ENSMUST00000223882 Gm3131 processed_pseudogene Interval_72360 chr17 29416108 29417027 + 0 NA Intergenic Intergenic 18190 ENSMUSG00000117575.1 ENSMUSG00000117575 ENSMUST00000234181 Gm36486 processed_transcript Interval_155645 chr8 35512876 35513195 + 0 NA Intergenic Intergenic -31627 ENSMUSG00000031527.7 ENSMUSG00000031527 ENSMUST00000210483 Eri1 protein_coding Interval_7932 chr1 134635917 134636127 + 0 NA TTS (ENSMUSG00000042207.17) protein_coding-TTS (ENSMUSG00000042207.17) 10498 ENSMUSG00000097435.1 ENSMUSG00000097435 ENSMUST00000181197 Gm26783 lincRNA Interval_38078 chr12 75531682 75531902 + 0 NA intron (ENSMUSG00000021051.10, intron 2 of 12) protein_coding-intron (ENSMUSG00000021051.10, intron 2 of 13) -23047 ENSMUSG00000112254.1 ENSMUSG00000112254 ENSMUST00000218033 Gm47690 TEC Interval_25614 chr11 50215694 50216614 + 0 NA intron (ENSMUSG00000036620.14, intron 1 of 2) protein_coding-intron (ENSMUSG00000036620.14, intron 1 of 2) -8835 ENSMUSG00000015837.15 ENSMUSG00000015837 ENSMUST00000154805 Sqstm1 protein_coding Interval_8547 chr1 141389165 141389897 + 0 NA Intergenic Intergenic 32742 ENSMUSG00000102740.1 ENSMUSG00000102740 ENSMUST00000193067 Gm37599 TEC Interval_129376 chr5 119610958 119611185 + 0 NA TTS (ENSMUSG00000087516.7) antisense-TTS (ENSMUSG00000087516.7) -12867 ENSMUSG00000106991.1 ENSMUSG00000106991 ENSMUST00000202546 Gm43399 TEC Interval_85412 chr19 25585631 25585812 + 0 NA intron (ENSMUSG00000024837.15, intron 3 of 3) protein_coding-intron (ENSMUSG00000024837.15, intron 4 of 4) -24580 ENSMUSG00000042372.5 ENSMUSG00000042372 ENSMUST00000048935 Dmrt3 protein_coding Interval_30893 chr11 97098579 97099240 + 0 NA exon (ENSMUSG00000001444.2, exon 6 of 6) protein_coding-exon (ENSMUSG00000001444.2, exon 6 of 6) 1976 ENSMUSG00000084068.1 ENSMUSG00000084068 ENSMUST00000119956 Gm11573 processed_pseudogene Interval_72501 chr17 30232615 30233457 + 0 NA intron (ENSMUSG00000062202.14, intron 1 of 2) protein_coding-intron (ENSMUSG00000062202.14, intron 9 of 11) 55561 ENSMUSG00000117974.1 ENSMUSG00000117974 ENSMUST00000236459 Tuba-rs1 transcribed_processed_pseudogene Interval_161826 chr8 123036680 123037779 + 0 NA intron (ENSMUSG00000035569.17, intron 1 of 2) protein_coding-intron (ENSMUSG00000035569.17, intron 1 of 12) 5048 ENSMUSG00000035569.17 ENSMUSG00000035569 ENSMUST00000212937 Ankrd11 protein_coding Interval_170387 chr9 107604997 107607179 + 0 NA promoter-TSS (ENSMUSG00000057969.15) protein_coding-promoter-TSS (ENSMUSG00000057969.15) 595 ENSMUSG00000057969.15 ENSMUSG00000057969 ENSMUST00000193551 Sema3b protein_coding Interval_65626 chr16 24353686 24354415 + 0 NA intron (ENSMUSG00000115852.2, intron 2 of 4) transcribed_processed_pseudogene-intron (ENSMUSG00000115852.2, intron 2 of 4) 16182 ENSMUSG00000116785.1 ENSMUSG00000116785 ENSMUST00000231939 Gm41434 processed_pseudogene Interval_29999 chr11 88618502 88620718 + 0 NA intron (ENSMUSG00000069769.13, intron 5 of 5) protein_coding-intron (ENSMUSG00000069769.13, intron 5 of 13) -29463 ENSMUSG00000069769.13 ENSMUSG00000069769 ENSMUST00000126293 Msi2 protein_coding Interval_80615 chr18 44612990 44613531 + 0 NA intron (ENSMUSG00000071856.10, intron 3 of 18) protein_coding-intron (ENSMUSG00000071856.10, intron 3 of 18) -48843 ENSMUSG00000097610.2 ENSMUSG00000097610 ENSMUST00000202771 A930012L18Rik antisense Interval_82106 chr18 67768126 67768858 + 0 NA intron (ENSMUSG00000118134.1, intron 3 of 3) antisense-intron (ENSMUSG00000118134.1, intron 3 of 3) 6365 ENSMUSG00000097835.1 ENSMUSG00000097835 ENSMUST00000180450 Gm26910 bidirectional_promoter_lncRNA Interval_79494 chr18 32350440 32351097 + 0 NA Intergenic Intergenic -26462 ENSMUSG00000024381.16 ENSMUSG00000024381 ENSMUST00000234373 Bin1 protein_coding Interval_101900 chr3 10649277 10649516 + 0 NA Intergenic Intergenic 3080 ENSMUSG00000104451.1 ENSMUSG00000104451 ENSMUST00000191685 Gm37831 TEC Interval_13084 chr10 11240333 11240959 + 0 NA Intergenic Intergenic -27667 ENSMUSG00000090070.1 ENSMUSG00000090070 ENSMUST00000161579 Gm16577 antisense Interval_120357 chr4 148083602 148085830 + 0 NA promoter-TSS (ENSMUSG00000029007.8) protein_coding-promoter-TSS (ENSMUSG00000029007.8) 60 ENSMUSG00000029007.8 ENSMUSG00000029007 ENSMUST00000137393 Agtrap protein_coding Interval_128600 chr5 114238593 114240079 + 0 NA intron (ENSMUSG00000042010.16, intron 30 of 40) protein_coding-intron (ENSMUSG00000042010.16, intron 41 of 51) -1411 ENSMUSG00000084243.1 ENSMUSG00000084243 ENSMUST00000119639 Gm13784 processed_pseudogene Interval_27398 chr11 67344722 67346298 + 0 NA intron (ENSMUSG00000060180.12, intron 18 of 40) protein_coding-intron (ENSMUSG00000060180.12, intron 16 of 38) -18580 ENSMUSG00000084567.1 ENSMUSG00000084567 ENSMUST00000122618 Gm26476 misc_RNA Interval_45308 chr13 54221760 54222145 + 0 NA exon (ENSMUSG00000034987.4, exon 3 of 3) protein_coding-exon (ENSMUSG00000034987.4, exon 3 of 3) 1071 ENSMUSG00000090016.1 ENSMUSG00000090016 ENSMUST00000160797 Gm16578 antisense Interval_86463 chr19 40747815 40749449 + 0 NA promoter-TSS (ENSMUSG00000108929.2) protein_coding-promoter-TSS (ENSMUSG00000108929.2) -121 ENSMUSG00000108929.2 ENSMUSG00000108929 ENSMUST00000207791 Cc2d2b protein_coding Interval_142395 chr6 141487395 141487658 + 0 NA exon (ENSMUSG00000041741.10, exon 11 of 16) protein_coding-exon (ENSMUSG00000041741.10, exon 11 of 16) -36873 ENSMUSG00000030235.17 ENSMUSG00000030235 ENSMUST00000203755 Slco1c1 protein_coding Interval_57839 chr15 22911312 22912265 + 0 NA intron (ENSMUSG00000040420.15, intron 1 of 6) protein_coding-intron (ENSMUSG00000040420.15, intron 1 of 6) -23699 ENSMUSG00000091194.1 ENSMUSG00000091194 ENSMUST00000169624 Gm19840 processed_pseudogene Interval_154809 chr8 23561707 23563795 + 0 NA Intergenic Intergenic -106910 ENSMUSG00000037492.16 ENSMUSG00000037492 ENSMUST00000146774 Zmat4 protein_coding Interval_35132 chr12 17495338 17496362 + 0 NA Intergenic Intergenic -49122 ENSMUSG00000011179.8 ENSMUSG00000011179 ENSMUST00000222250 Odc1 protein_coding Interval_105602 chr3 88028011 88028586 + 0 NA promoter-TSS (ENSMUSG00000004894.10) protein_coding-promoter-TSS (ENSMUSG00000004894.10) -2580 ENSMUSG00000105843.1 ENSMUSG00000105843 ENSMUST00000198195 Gm19439 TEC Interval_153885 chr8 10685616 10686006 + 0 NA exon (ENSMUSG00000109503.1, exon 1 of 2) lincRNA-exon (ENSMUSG00000109503.1, exon 1 of 2) 460 ENSMUSG00000109503.1 ENSMUSG00000109503 ENSMUST00000208165 Gm44786 lincRNA Interval_157817 chr8 74004730 74005048 + 0 NA Intergenic Intergenic 88795 ENSMUSG00000110703.1 ENSMUSG00000110703 ENSMUST00000211967 Gm45821 lincRNA Interval_144081 chr7 19344935 19345869 + 0 NA intron (ENSMUSG00000003549.9, intron 1 of 4) protein_coding-intron (ENSMUSG00000003549.9, intron 1 of 9) -2887 ENSMUSG00000108854.1 ENSMUSG00000108854 ENSMUST00000208263 D830036C21Rik lincRNA Interval_129243 chr5 118401118 118401687 + 0 NA Intergenic Intergenic -4072 ENSMUSG00000106812.1 ENSMUSG00000106812 ENSMUST00000201179 Gm28563 lincRNA Interval_113518 chr4 55476950 55478486 + 0 NA Intergenic Intergenic -8559 ENSMUSG00000077635.1 ENSMUSG00000077635 ENSMUST00000104447 Gm22150 snoRNA Interval_132992 chr5 149147511 149147997 + 0 NA intron (ENSMUSG00000107388.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000097191.2, intron 2 of 3) 2030 ENSMUSG00000092764.1 ENSMUSG00000092764 ENSMUST00000175023 Gm23362 snoRNA Interval_152553 chr7 134348775 134349672 + 0 NA promoter-TSS (ENSMUSG00000030994.16) protein_coding-promoter-TSS (ENSMUSG00000030994.16) -117092 ENSMUSG00000054555.11 ENSMUSG00000054555 ENSMUST00000154144 Adam12 protein_coding Interval_106584 chr3 97528954 97529338 + 0 NA Intergenic Intergenic -80786 ENSMUSG00000105004.1 ENSMUSG00000105004 ENSMUST00000198613 Gm43075 TEC Interval_77657 chr17 93650296 93650597 + 0 NA Intergenic Intergenic 30219 ENSMUSG00000117514.1 ENSMUSG00000117514 ENSMUST00000234106 Gm50002 processed_pseudogene Interval_173466 chrX 94197729 94198449 + 0 NA intron (ENSMUSG00000035150.15, intron 9 of 11) protein_coding-intron (ENSMUSG00000035150.15, intron 9 of 11) 14773 ENSMUSG00000035150.15 ENSMUSG00000035150 ENSMUST00000127963 Eif2s3x protein_coding Interval_63892 chr16 4297646 4298261 + 0 NA intron (ENSMUSG00000005580.11, intron 9 of 11) protein_coding-intron (ENSMUSG00000005580.11, intron 7 of 9) 22727 ENSMUSG00000084304.1 ENSMUSG00000084304 ENSMUST00000120290 Gm6142 processed_pseudogene Interval_151864 chr7 127194488 127197124 + 0 NA promoter-TSS (ENSMUSG00000042502.10) protein_coding-promoter-TSS (ENSMUSG00000042502.10) 160 ENSMUSG00000042502.10 ENSMUSG00000042502 ENSMUST00000206081 Cd2bp2 protein_coding Interval_144164 chr7 19749103 19750451 + 0 NA promoter-TSS (ENSMUSG00000062300.14) protein_coding-promoter-TSS (ENSMUSG00000062300.14) 706 ENSMUSG00000062300.14 ENSMUSG00000062300 ENSMUST00000207271 Nectin2 protein_coding Interval_20614 chr10 119483465 119484258 + 0 NA intron (ENSMUSG00000034813.18, intron 1 of 21) protein_coding-intron (ENSMUSG00000034813.18, intron 1 of 22) 12543 ENSMUSG00000112287.1 ENSMUSG00000112287 ENSMUST00000219397 Gm47024 TEC Interval_40229 chr12 102653828 102654478 + 0 NA intron (ENSMUSG00000057963.9, intron 2 of 4) protein_coding-intron (ENSMUSG00000057963.9, intron 2 of 9) -13219 ENSMUSG00000057963.9 ENSMUSG00000057963 ENSMUST00000178697 Itpk1 protein_coding Interval_23674 chr11 24370408 24370644 + 0 NA Intergenic Intergenic -55720 ENSMUSG00000087085.1 ENSMUSG00000087085 ENSMUST00000153153 Gm12068 lincRNA Interval_123818 chr5 35728704 35730115 + 0 NA promoter-TSS (ENSMUSG00000036553.16) protein_coding-promoter-TSS (ENSMUSG00000036553.16) 6854 ENSMUSG00000087703.1 ENSMUSG00000087703 ENSMUST00000135451 Gm15650 antisense Interval_44193 chr13 41816969 41817873 + 0 NA intron (ENSMUSG00000058022.14, intron 1 of 6) protein_coding-intron (ENSMUSG00000058022.14, intron 2 of 6) 10969 ENSMUSG00000058022.14 ENSMUSG00000058022 ENSMUST00000221691 Adtrp protein_coding Interval_45086 chr13 52014469 52015813 + 0 NA Intergenic Intergenic 6786 ENSMUSG00000102173.1 ENSMUSG00000102173 ENSMUST00000192362 Gm37872 TEC Interval_130134 chr5 124464901 124465559 + 0 NA intron (ENSMUSG00000029401.8, intron 3 of 3) protein_coding-intron (ENSMUSG00000029401.8, intron 3 of 3) -7197 ENSMUSG00000082402.1 ENSMUSG00000082402 ENSMUST00000119162 Gm15621 processed_pseudogene Interval_92412 chr2 59602865 59603239 + 0 NA Intergenic Intergenic -38368 ENSMUSG00000081157.1 ENSMUSG00000081157 ENSMUST00000118837 Gm13552 processed_pseudogene Interval_18324 chr10 84916854 84918130 + 0 NA promoter-TSS (ENSMUSG00000035620.15) protein_coding-promoter-TSS (ENSMUSG00000035620.15) -19901 ENSMUSG00000035620.15 ENSMUSG00000035620 ENSMUST00000214820 Ric8b protein_coding Interval_91750 chr2 49161590 49162664 + 0 NA intron (ENSMUSG00000036792.12, intron 5 of 7) protein_coding-intron (ENSMUSG00000036792.12, intron 5 of 10) -22891 ENSMUSG00000080937.1 ENSMUSG00000080937 ENSMUST00000118659 Gm13510 processed_pseudogene Interval_61929 chr15 85315183 85316045 + 0 NA Intergenic Intergenic -20631 ENSMUSG00000016541.10 ENSMUSG00000016541 ENSMUST00000163242 Atxn10 protein_coding Interval_84506 chr19 11946170 11947465 + 0 NA Intergenic Intergenic -13189 ENSMUSG00000077227.1 ENSMUSG00000077227 ENSMUST00000104039 Gm22272 snoRNA Interval_63544 chr15 101940018 101940267 + 0 NA exon (ENSMUSG00000061397.8, exon 1 of 9) protein_coding-exon (ENSMUSG00000061397.8, exon 1 of 9) -6155 ENSMUSG00000061397.8 ENSMUSG00000061397 ENSMUST00000230441 Krt79 protein_coding Interval_14750 chr10 39582505 39582998 + 0 NA intron (ENSMUSG00000086915.7, intron 2 of 2) antisense-intron (ENSMUSG00000086915.7, intron 1 of 3) -24689 ENSMUSG00000087014.1 ENSMUSG00000087014 ENSMUST00000153722 Gm16364 antisense Interval_134848 chr6 32327237 32328683 + 0 NA intron (ENSMUSG00000029765.12, intron 3 of 31) protein_coding-intron (ENSMUSG00000029765.12, intron 3 of 31) 24047 ENSMUSG00000086720.1 ENSMUSG00000086720 ENSMUST00000143328 Plxna4os3 antisense Interval_130365 chr5 126737717 126738112 + 0 NA Intergenic Intergenic -10630 ENSMUSG00000106235.1 ENSMUSG00000106235 ENSMUST00000200003 Gm33347 lincRNA Interval_95355 chr2 106863180 106863635 + 0 NA intron (ENSMUSG00000016386.15, intron 5 of 6) protein_coding-intron (ENSMUSG00000016386.15, intron 5 of 6) -53364 ENSMUSG00000085530.1 ENSMUSG00000085530 ENSMUST00000137252 Gm13901 processed_pseudogene Interval_81622 chr18 62250010 62251108 + 0 NA Intergenic Intergenic 70433 ENSMUSG00000054589.1 ENSMUSG00000054589 ENSMUST00000067743 Gm9949 lincRNA Interval_169424 chr9 97133066 97134659 + 0 NA Intergenic Intergenic -43835 ENSMUSG00000032449.13 ENSMUSG00000032449 ENSMUST00000152632 Slc25a36 protein_coding Interval_47502 chr13 85845655 85846049 + 0 NA Intergenic Intergenic 19481 ENSMUSG00000114447.1 ENSMUSG00000114447 ENSMUST00000224158 Gm47636 processed_pseudogene Interval_28918 chr11 79271239 79271549 + 0 NA intron (ENSMUSG00000108822.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000108822.1, intron 1 of 1) 2499 ENSMUSG00000108822.1 ENSMUSG00000108822 ENSMUST00000208268 Gm44787 lincRNA Interval_7335 chr1 129364300 129364681 + 0 NA intron (ENSMUSG00000042581.14, intron 1 of 1) protein_coding-intron (ENSMUSG00000042581.14, intron 1 of 15) -7814 ENSMUSG00000103637.1 ENSMUSG00000103637 ENSMUST00000192743 Gm38330 TEC Interval_143759 chr7 16144827 16145742 + 0 NA exon (ENSMUSG00000030376.8, exon 4 of 9) protein_coding-exon (ENSMUSG00000030376.8, exon 4 of 9) 15458 ENSMUSG00000030376.8 ENSMUSG00000030376 ENSMUST00000168693 Slc8a2 protein_coding Interval_153707 chr8 4834911 4835138 + 0 NA Intergenic Intergenic -13794 ENSMUSG00000109063.1 ENSMUSG00000109063 ENSMUST00000207450 Gm44961 processed_pseudogene Interval_108389 chr3 126562140 126562947 + 0 NA Intergenic Intergenic -34663 ENSMUSG00000053819.16 ENSMUSG00000053819 ENSMUST00000198637 Camk2d protein_coding Interval_139965 chr6 113097810 113098293 + 0 NA intron (ENSMUSG00000034269.12, intron 1 of 2) protein_coding-intron (ENSMUSG00000034269.12, intron 1 of 21) -12366 ENSMUSG00000034269.12 ENSMUSG00000034269 ENSMUST00000156048 Setd5 protein_coding Interval_116441 chr4 112156184 112157068 + 0 NA intron (ENSMUSG00000055960.12, intron 9 of 10) protein_coding-intron (ENSMUSG00000055960.12, intron 9 of 10) -10394 ENSMUSG00000082638.1 ENSMUSG00000082638 ENSMUST00000121737 Gm12815 processed_pseudogene Interval_86107 chr19 36746203 36746468 + 0 NA Intergenic Intergenic -9682 ENSMUSG00000067279.3 ENSMUSG00000067279 ENSMUST00000087321 Ppp1r3c protein_coding Interval_63614 chr15 102355243 102356442 + 0 NA TTS (ENSMUSG00000060284.7) protein_coding-TTS (ENSMUSG00000060284.7) 5015 ENSMUSG00000116402.1 ENSMUSG00000116402 ENSMUST00000229977 Gm36246 bidirectional_promoter_lncRNA Interval_120311 chr4 145360534 145361485 + 0 NA Intergenic Intergenic -29934 ENSMUSG00000082758.1 ENSMUSG00000082758 ENSMUST00000121756 Gm13024 processed_pseudogene Interval_16748 chr10 67911759 67913254 + 0 NA promoter-TSS (ENSMUSG00000037855.15) protein_coding-promoter-TSS (ENSMUSG00000037855.15) -71 ENSMUSG00000037855.15 ENSMUSG00000037855 ENSMUST00000138543 Zfp365 protein_coding Interval_164448 chr9 37100947 37101943 + 0 NA intron (ENSMUSG00000035934.16, intron 1 of 4) protein_coding-intron (ENSMUSG00000035934.16, intron 1 of 12) -17211 ENSMUSG00000110722.1 ENSMUSG00000110722 ENSMUST00000215174 Gm48716 antisense Interval_145829 chr7 39716270 39717502 + 0 NA Intergenic Intergenic 23643 ENSMUSG00000101901.1 ENSMUSG00000101901 ENSMUST00000188228 Gm9230 processed_pseudogene Interval_167773 chr9 72656807 72658242 + 0 NA Intergenic Intergenic -4822 ENSMUSG00000032216.15 ENSMUSG00000032216 ENSMUST00000184287 Nedd4 protein_coding Interval_159614 chr8 95793867 95796375 + 0 NA intron (ENSMUSG00000036550.16, intron 1 of 3) protein_coding-intron (ENSMUSG00000036550.16, intron 1 of 47) -11623 ENSMUSG00000074136.9 ENSMUSG00000074136 ENSMUST00000132616 4930513N10Rik antisense Interval_137543 chr6 73009433 73011082 + 0 NA Intergenic Intergenic -1786 ENSMUSG00000107546.1 ENSMUSG00000107546 ENSMUST00000204577 Gm20560 antisense Interval_89983 chr2 27049483 27049826 + 0 NA Intergenic Intergenic 12369 ENSMUSG00000087364.1 ENSMUSG00000087364 ENSMUST00000149378 Gm13398 protein_coding Interval_153617 chr8 3861049 3861520 + 0 NA Intergenic Intergenic -6975 ENSMUSG00000040197.4 ENSMUSG00000040197 ENSMUST00000033888 Cd209e protein_coding Interval_96527 chr2 125301856 125303793 + 0 NA intron (ENSMUSG00000027204.13, intron 64 of 64) protein_coding-intron (ENSMUSG00000027204.13, intron 65 of 65) -18846 ENSMUSG00000087682.1 ENSMUSG00000087682 ENSMUST00000130919 Gm14003 lincRNA Interval_33864 chr11 119064895 119065399 + 0 NA Intergenic Intergenic 21074 ENSMUSG00000039989.7 ENSMUSG00000039989 ENSMUST00000145058 Cbx4 protein_coding Interval_79249 chr18 27514404 27516231 + 0 NA Intergenic Intergenic -83327 ENSMUSG00000046636.5 ENSMUSG00000046636 ENSMUST00000050143 Gm7729 unprocessed_pseudogene Interval_167298 chr9 67111511 67111792 + 0 NA Intergenic Intergenic 7443 ENSMUSG00000088021.1 ENSMUSG00000088021 ENSMUST00000157396 Gm22145 snRNA Interval_129739 chr5 122059248 122059584 + 0 NA Intergenic Intergenic 11034 ENSMUSG00000087386.1 ENSMUSG00000087386 ENSMUST00000135544 Gm15637 antisense Interval_116116 chr4 107869643 107870195 + 0 NA intron (ENSMUSG00000028613.15, intron 15 of 15) protein_coding-intron (ENSMUSG00000028613.15, intron 17 of 18) 8613 ENSMUSG00000028613.15 ENSMUSG00000028613 ENSMUST00000238693 Lrp8 protein_coding Interval_40876 chr12 109023761 109024263 + 0 NA intron (ENSMUSG00000040877.16, intron 1 of 3) protein_coding-intron (ENSMUSG00000040877.16, intron 5 of 7) 29763 ENSMUSG00000040867.13 ENSMUSG00000040867 ENSMUST00000185745 Begain protein_coding Interval_106596 chr3 97587923 97588110 + 0 NA exon (ENSMUSG00000028089.5, exon 11 of 16) protein_coding-exon (ENSMUSG00000028089.5, exon 11 of 16) -21916 ENSMUSG00000105004.1 ENSMUSG00000105004 ENSMUST00000198613 Gm43075 TEC Interval_51579 chr14 30479147 30480157 + 0 NA promoter-TSS (ENSMUSG00000021962.9) protein_coding-promoter-TSS (ENSMUSG00000021962.9) -44055 ENSMUSG00000021962.9 ENSMUSG00000021962 ENSMUST00000225934 Dcp1a protein_coding Interval_150821 chr7 115057023 115058125 + 0 NA intron (ENSMUSG00000108722.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000108722.1, intron 1 of 2) -7419 ENSMUSG00000108722.1 ENSMUSG00000108722 ENSMUST00000205978 Gm34225 lincRNA Interval_61439 chr15 81621936 81622152 + 0 NA intron (ENSMUSG00000055024.12, intron 1 of 2) protein_coding-intron (ENSMUSG00000055024.12, intron 10 of 30) 982 ENSMUSG00000055024.12 ENSMUSG00000055024 ENSMUST00000206431 Ep300 protein_coding Interval_52158 chr14 37355806 37356427 + 0 NA Intergenic Intergenic 81504 ENSMUSG00000077786.1 ENSMUSG00000077786 ENSMUST00000104598 Gm23909 snoRNA Interval_155299 chr8 31074802 31075342 + 0 NA Intergenic Intergenic -14566 ENSMUSG00000039661.14 ENSMUSG00000039661 ENSMUST00000160700 Dusp26 protein_coding Interval_74371 chr17 49633080 49633334 + 0 NA intron (ENSMUSG00000023999.14, intron 4 of 5) protein_coding-intron (ENSMUSG00000023999.14, intron 3 of 11) 18035 ENSMUSG00000023999.14 ENSMUSG00000023999 ENSMUST00000159354 Kif6 protein_coding Interval_162004 chr8 124375223 124375497 + 0 NA promoter-TSS (ENSMUSG00000050751.14) protein_coding-promoter-TSS (ENSMUSG00000050751.14) 18122 ENSMUSG00000064664.1 ENSMUSG00000064664 ENSMUST00000082730 Gm24459 snRNA Interval_87519 chr19 53209793 53210755 + 0 NA intron (ENSMUSG00000025026.15, intron 2 of 14) protein_coding-intron (ENSMUSG00000025026.15, intron 2 of 15) 44916 ENSMUSG00000118314.1 ENSMUSG00000118314 ENSMUST00000237379 1700001K23Rik lincRNA Interval_103590 chr3 50905321 50906789 + 0 NA Intergenic Intergenic 15470 ENSMUSG00000102614.1 ENSMUSG00000102614 ENSMUST00000195213 Gm37843 TEC Interval_139175 chr6 96858737 96859349 + 0 NA intron (ENSMUSG00000046500.8, intron 4 of 5) protein_coding-intron (ENSMUSG00000046500.8, intron 4 of 5) 201350 ENSMUSG00000046500.8 ENSMUSG00000046500 ENSMUST00000203930 Tafa4 protein_coding Interval_50597 chr14 16336327 16336619 + 0 NA TTS (ENSMUSG00000114243.1) antisense-TTS (ENSMUSG00000114243.1) 29795 ENSMUSG00000114243.1 ENSMUSG00000114243 ENSMUST00000225819 Gm48163 antisense Interval_29262 chr11 82434147 82435432 + 0 NA TTS (ENSMUSG00000020701.12) protein_coding-TTS (ENSMUSG00000020701.12) -3468 ENSMUSG00000020701.12 ENSMUSG00000020701 ENSMUST00000202598 Tmem132e protein_coding Interval_92833 chr2 66114384 66114980 + 0 NA intron (ENSMUSG00000026994.9, intron 1 of 10) protein_coding-intron (ENSMUSG00000026994.9, intron 1 of 10) -10635 ENSMUSG00000100197.1 ENSMUSG00000100197 ENSMUST00000188152 Gm28638 lincRNA Interval_104953 chr3 79244422 79245077 + 0 NA intron (ENSMUSG00000062232.14, intron 1 of 29) protein_coding-intron (ENSMUSG00000062232.14, intron 1 of 29) 31830 ENSMUSG00000104585.1 ENSMUSG00000104585 ENSMUST00000200412 4921511C10Rik antisense Interval_25908 chr11 52469181 52469419 + 0 NA Intergenic Intergenic 9803 ENSMUSG00000081297.1 ENSMUSG00000081297 ENSMUST00000120089 Gm12209 processed_pseudogene Interval_52276 chr14 43121832 43123977 + 0 NA promoter-TSS (ENSMUSG00000090389.2) processed_pseudogene-promoter-TSS (ENSMUSG00000090389.2) -433 ENSMUSG00000090389.2 ENSMUSG00000090389 ENSMUST00000169632 Cdv3-ps processed_pseudogene Interval_171628 chr9 119686335 119686636 + 0 NA intron (ENSMUSG00000034533.10, intron 1 of 11) protein_coding-intron (ENSMUSG00000034533.10, intron 4 of 27) 1554 ENSMUSG00000034533.10 ENSMUSG00000034533 ENSMUST00000213401 Scn10a protein_coding Interval_107128 chr3 103757008 103757407 + 0 NA intron (ENSMUSG00000008730.17, intron 8 of 15) protein_coding-intron (ENSMUSG00000008730.17, intron 8 of 15) -6142 ENSMUSG00000008730.17 ENSMUSG00000008730 ENSMUST00000135634 Hipk1 protein_coding Interval_104037 chr3 57592059 57592329 + 0 NA Intergenic Intergenic -16284 ENSMUSG00000027803.14 ENSMUSG00000027803 ENSMUST00000120977 Wwtr1 protein_coding Interval_98581 chr2 153384311 153384629 + 0 NA intron (ENSMUSG00000042548.14, intron 3 of 11) protein_coding-intron (ENSMUSG00000042548.14, intron 4 of 12) -29379 ENSMUSG00000082283.1 ENSMUSG00000082283 ENSMUST00000119815 Gm14472 processed_pseudogene Interval_104245 chr3 61816740 61817148 + 0 NA Intergenic Intergenic 252850 ENSMUSG00000104489.1 ENSMUSG00000104489 ENSMUST00000193786 Gm9700 processed_pseudogene Interval_173403 chrX 88997835 88998380 + 0 NA Intergenic Intergenic -7263 ENSMUSG00000084060.3 ENSMUSG00000084060 ENSMUST00000121602 Gm16412 processed_pseudogene Interval_154460 chr8 18187323 18187914 + 0 NA Intergenic Intergenic 87203 ENSMUSG00000088320.1 ENSMUSG00000088320 ENSMUST00000157695 Gm25665 snoRNA Interval_60598 chr15 75597010 75597967 + 0 NA exon (ENSMUSG00000022579.10, exon 2 of 3) protein_coding-exon (ENSMUSG00000022579.10, exon 2 of 3) 820 ENSMUSG00000022579.10 ENSMUSG00000022579 ENSMUST00000186934 Gpihbp1 protein_coding Interval_12584 chr10 3567610 3568052 + 0 NA Intergenic Intergenic 27543 ENSMUSG00000019762.4 ENSMUSG00000019762 ENSMUST00000141745 Iyd protein_coding Interval_54528 chr14 70485045 70485467 + 0 NA intron (ENSMUSG00000022098.10, intron 2 of 3) protein_coding-intron (ENSMUSG00000022098.10, intron 16 of 19) 1383 ENSMUSG00000022098.10 ENSMUSG00000022098 ENSMUST00000226539 Bmp1 protein_coding Interval_161207 chr8 118648861 118650703 + 0 NA intron (ENSMUSG00000031841.19, intron 2 of 7) protein_coding-intron (ENSMUSG00000031841.19, intron 2 of 13) -33903 ENSMUSG00000110667.1 ENSMUSG00000110667 ENSMUST00000211881 Gm45720 antisense Interval_2291 chr1 37708141 37708741 + 0 NA intron (ENSMUSG00000026090.16, intron 1 of 3) protein_coding-intron (ENSMUSG00000026090.16, intron 1 of 3) 11644 ENSMUSG00000026090.16 ENSMUSG00000026090 ENSMUST00000160589 2010300C02Rik protein_coding Interval_45252 chr13 53526847 53527072 + 0 NA TTS (ENSMUSG00000063166.4) processed_pseudogene-TTS (ENSMUSG00000063166.4) 1256 ENSMUSG00000063166.4 ENSMUSG00000063166 ENSMUST00000081132 Gm5449 processed_pseudogene Interval_125048 chr5 64102222 64103443 + 0 NA promoter-TSS (ENSMUSG00000029171.12) protein_coding-promoter-TSS (ENSMUSG00000029171.12) -558 ENSMUSG00000029171.12 ENSMUSG00000029171 ENSMUST00000197577 Pgm2 protein_coding Interval_155346 chr8 32027904 32028185 + 0 NA intron (ENSMUSG00000062991.9, intron 1 of 12) protein_coding-intron (ENSMUSG00000062991.9, intron 1 of 8) -18935 ENSMUSG00000062991.9 ENSMUSG00000062991 ENSMUST00000208206 Nrg1 protein_coding Interval_123571 chr5 33542034 33543951 + 0 NA Intergenic Intergenic 86070 ENSMUSG00000037339.17 ENSMUSG00000037339 ENSMUST00000140043 Fam53a protein_coding Interval_114525 chr4 82194254 82194453 + 0 NA Intergenic Intergenic 128396 ENSMUSG00000085022.2 ENSMUSG00000085022 ENSMUST00000161588 Gm5860 lincRNA Interval_102339 chr3 22033630 22034773 + 0 NA Intergenic Intergenic 13004 ENSMUSG00000106527.1 ENSMUSG00000106527 ENSMUST00000200422 Gm43671 processed_pseudogene Interval_40322 chr12 103609255 103609691 + 0 NA intron (ENSMUSG00000021209.12, intron 24 of 25) protein_coding-intron (ENSMUSG00000021209.12, intron 23 of 24) 21948 ENSMUSG00000061947.10 ENSMUSG00000061947 ENSMUST00000121625 Serpina10 protein_coding Interval_168072 chr9 75877160 75878247 + 0 NA TTS (ENSMUSG00000110817.1) TEC-TTS (ENSMUSG00000110817.1) 1443 ENSMUSG00000110817.1 ENSMUSG00000110817 ENSMUST00000215680 Gm47723 TEC Interval_100788 chr2 172526762 172527750 + 0 NA Intergenic Intergenic -17565 ENSMUSG00000081344.5 ENSMUSG00000081344 ENSMUST00000121320 Gm14303 processed_pseudogene Interval_97848 chr2 144412424 144412654 + 0 NA Intergenic Intergenic 43543 ENSMUSG00000098387.2 ENSMUSG00000098387 ENSMUST00000183618 Pet117 protein_coding Interval_133569 chr6 6881066 6882630 + 0 NA exon (ENSMUSG00000029755.10, exon 1 of 3) protein_coding-exon (ENSMUSG00000029755.10, exon 1 of 3) 234 ENSMUSG00000029755.10 ENSMUSG00000029755 ENSMUST00000204014 Dlx5 protein_coding Interval_168999 chr9 90113138 90115156 + 0 NA intron (ENSMUSG00000062270.14, intron 1 of 7) protein_coding-intron (ENSMUSG00000062270.14, intron 1 of 12) 512 ENSMUSG00000062270.14 ENSMUSG00000062270 ENSMUST00000185433 Morf4l1 protein_coding Interval_86913 chr19 44808331 44809494 + 0 NA TTS (ENSMUSG00000098952.1) miRNA-TTS (ENSMUSG00000098952.1) 506 ENSMUSG00000098952.1 ENSMUSG00000098952 ENSMUST00000184584 Mir6405 miRNA Interval_31703 chr11 102339420 102340829 + 0 NA Intergenic Intergenic -21028 ENSMUSG00000020923.17 ENSMUSG00000020923 ENSMUST00000128016 Ubtf protein_coding Interval_81925 chr18 65924270 65925784 + 0 NA promoter-TSS (ENSMUSG00000118162.1) processed_pseudogene-promoter-TSS (ENSMUSG00000118162.1) -431 ENSMUSG00000118162.1 ENSMUSG00000118162 ENSMUST00000236891 Gm50119 processed_pseudogene Interval_48160 chr13 96788381 96788977 + 0 NA intron (ENSMUSG00000109561.1, intron 1 of 5) protein_coding-intron (ENSMUSG00000109561.1, intron 3 of 19) -10749 ENSMUSG00000113879.1 ENSMUSG00000113879 ENSMUST00000222172 Gm48580 processed_pseudogene Interval_32645 chr11 109375548 109375828 + 0 NA intron (ENSMUSG00000020611.14, intron 2 of 3) protein_coding-intron (ENSMUSG00000020611.14, intron 2 of 3) -12445 ENSMUSG00000056687.9 ENSMUSG00000056687 ENSMUST00000190563 Gm11696 antisense Interval_9293 chr1 155903687 155904576 + 0 NA intron (ENSMUSG00000033671.18, intron 22 of 37) protein_coding-intron (ENSMUSG00000033671.18, intron 22 of 37) -21585 ENSMUSG00000102837.1 ENSMUSG00000102837 ENSMUST00000191750 Gm37383 TEC Interval_80967 chr18 51450165 51450390 + 0 NA Intergenic Intergenic 157391 ENSMUSG00000077317.1 ENSMUSG00000077317 ENSMUST00000104129 Gm25785 snRNA Interval_39125 chr12 85279806 85280753 + 0 NA promoter-TSS (ENSMUSG00000008822.15) protein_coding-promoter-TSS (ENSMUSG00000008822.15) 5940 ENSMUSG00000045064.5 ENSMUSG00000045064 ENSMUST00000059341 Zc2hc1c protein_coding Interval_46883 chr13 73091505 73092091 + 0 NA Intergenic Intergenic -141597 ENSMUSG00000113952.1 ENSMUSG00000113952 ENSMUST00000223231 Rpl31-ps2 processed_pseudogene Interval_11939 chr1 187347075 187347505 + 0 NA exon (ENSMUSG00000104245.1, exon 2 of 2) antisense-exon (ENSMUSG00000104245.1, exon 2 of 2) 30179 ENSMUSG00000104245.1 ENSMUSG00000104245 ENSMUST00000192285 Gm38155 antisense Interval_84336 chr19 10194441 10194754 + 0 NA TTS (ENSMUSG00000010663.5) protein_coding-TTS (ENSMUSG00000010663.5) 1685 ENSMUSG00000010663.5 ENSMUSG00000010663 ENSMUST00000236385 Fads1 protein_coding Interval_92101 chr2 53196494 53197185 + 0 NA intron (ENSMUSG00000026960.6, intron 2 of 3) protein_coding-intron (ENSMUSG00000026960.6, intron 2 of 3) 5113 ENSMUSG00000026960.6 ENSMUSG00000026960 ENSMUST00000028336 Arl6ip6 protein_coding Interval_161673 chr8 121936494 121936894 + 0 NA intron (ENSMUSG00000025317.7, intron 2 of 6) protein_coding-intron (ENSMUSG00000025317.7, intron 2 of 6) -9220 ENSMUSG00000025317.7 ENSMUSG00000025317 ENSMUST00000151462 Car5a protein_coding Interval_33473 chr11 116721784 116722536 + 0 NA Intergenic Intergenic -27551 ENSMUSG00000057286.6 ENSMUSG00000057286 ENSMUST00000145441 St6galnac2 protein_coding Interval_74780 chr17 56502590 56503012 + 0 NA Intergenic Intergenic 9630 ENSMUSG00000044526.3 ENSMUSG00000044526 ENSMUST00000052211 Znrf4 protein_coding Interval_30284 chr11 92870322 92870499 + 0 NA Intergenic Intergenic -39887 ENSMUSG00000087810.1 ENSMUSG00000087810 ENSMUST00000157185 Gm25113 snoRNA Interval_156630 chr8 55939853 55940982 + 0 NA promoter-TSS (ENSMUSG00000038257.10) protein_coding-promoter-TSS (ENSMUSG00000038257.10) -408 ENSMUSG00000038257.10 ENSMUSG00000038257 ENSMUST00000239388 Glra3 protein_coding Interval_108247 chr3 122954323 122954543 + 0 NA intron (ENSMUSG00000039701.11, intron 10 of 12) protein_coding-intron (ENSMUSG00000039701.11, intron 9 of 15) 29460 ENSMUSG00000039701.11 ENSMUSG00000039701 ENSMUST00000200188 Usp53 protein_coding Interval_163048 chr9 14796877 14797085 + 0 NA promoter-TSS (ENSMUSG00000031928.15) protein_coding-promoter-TSS (ENSMUSG00000031928.15) 11059 ENSMUSG00000111817.1 ENSMUSG00000111817 ENSMUST00000216810 Gm47154 processed_pseudogene Interval_88522 chr2 5811814 5813586 + 0 NA intron (ENSMUSG00000039128.13, intron 6 of 6) protein_coding-intron (ENSMUSG00000039128.13, intron 6 of 12) 10419 ENSMUSG00000039128.13 ENSMUSG00000039128 ENSMUST00000150876 Cdc123 protein_coding Interval_98662 chr2 153973144 153973528 + 0 NA Intergenic Intergenic -1609 ENSMUSG00000078998.3 ENSMUSG00000078998 ENSMUST00000109753 Bpifa6 protein_coding Interval_22217 chr11 7221939 7222419 + 0 NA Intergenic Intergenic -8256 ENSMUSG00000020427.11 ENSMUSG00000020427 ENSMUST00000135887 Igfbp3 protein_coding Interval_164946 chr9 43283449 43284759 + 0 NA Intergenic Intergenic 18825 ENSMUSG00000095385.3 ENSMUSG00000095385 ENSMUST00000210037 D630033O11Rik lincRNA Interval_60563 chr15 74975012 74976114 + 0 NA Intergenic Intergenic 7867 ENSMUSG00000022586.11 ENSMUSG00000022586 ENSMUST00000166694 Ly6i protein_coding Interval_55175 chr14 79012977 79013771 + 0 NA intron (ENSMUSG00000058997.8, intron 17 of 25) protein_coding-intron (ENSMUSG00000058997.8, intron 17 of 44) -46806 ENSMUSG00000115539.1 ENSMUSG00000115539 ENSMUST00000227296 Gm6997 processed_pseudogene Interval_21741 chr11 4052778 4054154 + 0 NA Intergenic Intergenic -11425 ENSMUSG00000054986.13 ENSMUSG00000054986 ENSMUST00000126396 Sec14l3 protein_coding Interval_93601 chr2 74746028 74747352 + 0 NA TTS (ENSMUSG00000079277.9) protein_coding-TTS (ENSMUSG00000079277.9) 968 ENSMUSG00000079277.9 ENSMUSG00000079277 ENSMUST00000190553 Hoxd3 protein_coding Interval_174694 chrX 163260090 163261057 + 0 NA Intergenic Intergenic -12339 ENSMUSG00000082598.1 ENSMUSG00000082598 ENSMUST00000122403 Gm15212 processed_pseudogene Interval_143653 chr7 13989874 13990537 + 0 NA promoter-TSS (ENSMUSG00000074377.12) protein_coding-promoter-TSS (ENSMUSG00000074377.12) -617 ENSMUSG00000074377.12 ENSMUSG00000074377 ENSMUST00000165167 Sult2a4 protein_coding Interval_44315 chr13 43571159 43571407 + 0 NA Intergenic Intergenic -11092 ENSMUSG00000021371.5 ENSMUSG00000021371 ENSMUST00000223353 Mcur1 protein_coding Interval_14360 chr10 31513254 31513447 + 0 NA intron (ENSMUSG00000063760.9, intron 3 of 5) protein_coding-intron (ENSMUSG00000063760.9, intron 3 of 5) 44090 ENSMUSG00000112338.1 ENSMUSG00000112338 ENSMUST00000219494 Gm47693 TEC Interval_29542 chr11 84790538 84790739 + 0 NA Intergenic Intergenic -12809 ENSMUSG00000087407.1 ENSMUSG00000087407 ENSMUST00000155046 Gm11431 lincRNA Interval_34316 chr12 3344349 3344876 + 0 NA exon (ENSMUSG00000097429.1, exon 2 of 2) lincRNA-exon (ENSMUSG00000097429.1, exon 2 of 2) 12541 ENSMUSG00000097429.1 ENSMUSG00000097429 ENSMUST00000180719 Gm26520 lincRNA Interval_107457 chr3 107832267 107834557 + 0 NA exon (ENSMUSG00000106426.1, exon 1 of 4) lincRNA-exon (ENSMUSG00000106426.1, exon 1 of 4) 127 ENSMUSG00000106426.1 ENSMUSG00000106426 ENSMUST00000198171 Gm36211 lincRNA Interval_96886 chr2 129224357 129224916 + 0 NA exon (ENSMUSG00000087528.1, exon 3 of 3) processed_transcript-exon (ENSMUSG00000087528.1, exon 3 of 3) 1802 ENSMUSG00000087528.1 ENSMUSG00000087528 ENSMUST00000126080 9830144P21Rik processed_transcript Interval_7527 chr1 132000488 132000889 + 0 NA intron (ENSMUSG00000100037.1, intron 2 of 2) processed_transcript-intron (ENSMUSG00000100037.1, intron 2 of 2) -17120 ENSMUSG00000026436.15 ENSMUSG00000026436 ENSMUST00000131159 Elk4 protein_coding Interval_77728 chr17 94728953 94731064 + 0 NA intron (ENSMUSG00000055660.9, intron 8 of 8) protein_coding-intron (ENSMUSG00000055660.9, intron 7 of 7) 19884 ENSMUSG00000055660.9 ENSMUSG00000055660 ENSMUST00000234593 Mettl4 protein_coding Interval_161864 chr8 123290038 123290934 + 0 NA TTS (ENSMUSG00000032815.16) protein_coding-TTS (ENSMUSG00000032815.16) -20190 ENSMUSG00000032815.16 ENSMUSG00000032815 ENSMUST00000150318 Fanca protein_coding Interval_100837 chr2 172818187 172819104 + 0 NA Intergenic Intergenic 45696 ENSMUSG00000093160.1 ENSMUSG00000093160 ENSMUST00000175419 Gm22773 miRNA Interval_12518 chr1 194761336 194762315 + 0 NA intron (ENSMUSG00000026640.12, intron 9 of 31) protein_coding-intron (ENSMUSG00000026640.12, intron 9 of 31) 29118 ENSMUSG00000103776.1 ENSMUSG00000103776 ENSMUST00000194966 2900035J10Rik TEC Interval_79973 chr18 36377355 36378070 + 0 NA intron (ENSMUSG00000046727.13, intron 4 of 4) protein_coding-intron (ENSMUSG00000046727.13, intron 2 of 2) 35132 ENSMUSG00000046727.13 ENSMUSG00000046727 ENSMUST00000144158 Cystm1 protein_coding Interval_86343 chr19 38902053 38903567 + 0 NA intron (ENSMUSG00000048720.8, intron 6 of 12) protein_coding-intron (ENSMUSG00000048720.8, intron 6 of 12) 17568 ENSMUSG00000089545.1 ENSMUSG00000089545 ENSMUST00000158920 Gm25838 misc_RNA Interval_41503 chr12 115382532 115382921 + 0 NA Intergenic Intergenic -4120 ENSMUSG00000102332.1 ENSMUSG00000102332 ENSMUST00000193799 Gm19331 lincRNA Interval_153284 chr7 143267739 143267977 + 0 NA exon (ENSMUSG00000101609.2, exon 1 of 1) antisense-exon (ENSMUSG00000101609.2, exon 1 of 1) -5195 ENSMUSG00000098859.1 ENSMUSG00000098859 ENSMUST00000183622 Gm27389 misc_RNA Interval_19881 chr10 110877897 110879943 + 0 NA intron (ENSMUSG00000101801.6, intron 2 of 2) antisense-intron (ENSMUSG00000101801.6, intron 2 of 2) 13499 ENSMUSG00000088447.1 ENSMUSG00000088447 ENSMUST00000157822 Gm22186 snoRNA Interval_56331 chr14 117646736 117646946 + 0 NA intron (ENSMUSG00000058571.11, intron 4 of 9) protein_coding-intron (ENSMUSG00000058571.11, intron 4 of 8) 307006 ENSMUSG00000098648.1 ENSMUSG00000098648 ENSMUST00000183564 Mir6239 miRNA Interval_56633 chr14 120978592 120979957 + 0 NA Intergenic Intergenic 63427 ENSMUSG00000030662.10 ENSMUSG00000030662 ENSMUST00000228277 Ipo5 protein_coding Interval_102153 chr3 18740085 18740300 + 0 NA Intergenic Intergenic -12885 ENSMUSG00000103264.1 ENSMUSG00000103264 ENSMUST00000194363 Gm30341 processed_pseudogene Interval_10984 chr1 177756186 177756423 + 0 NA Intergenic Intergenic 26490 ENSMUSG00000015962.5 ENSMUSG00000015962 ENSMUST00000016106 1700016C15Rik protein_coding Interval_79530 chr18 33010956 33011611 + 0 NA intron (ENSMUSG00000038128.7, intron 4 of 14) protein_coding-intron (ENSMUSG00000038128.7, intron 1 of 10) -6517 ENSMUSG00000088077.1 ENSMUSG00000088077 ENSMUST00000157452 Gm22814 snRNA Interval_165051 chr9 44143345 44144816 + 0 NA exon (ENSMUSG00000034342.9, exon 16 of 16) protein_coding-exon (ENSMUSG00000034342.9, exon 16 of 16) 9419 ENSMUSG00000032135.15 ENSMUSG00000032135 ENSMUST00000132490 Mcam protein_coding Interval_104403 chr3 65351844 65353135 + 0 NA intron (ENSMUSG00000027827.17, intron 8 of 13) protein_coding-intron (ENSMUSG00000027827.17, intron 8 of 13) -3060 ENSMUSG00000090120.1 ENSMUSG00000090120 ENSMUST00000160137 A730090N16Rik antisense Interval_62970 chr15 98375185 98375637 + 0 NA Intergenic Intergenic 5535 ENSMUSG00000056184.5 ENSMUSG00000056184 ENSMUST00000057386 Olfr283 protein_coding Interval_114807 chr4 85413190 85413859 + 0 NA intron (ENSMUSG00000028488.15, intron 7 of 7) protein_coding-intron (ENSMUSG00000028488.15, intron 7 of 7) 37183 ENSMUSG00000028488.15 ENSMUSG00000028488 ENSMUST00000133109 Sh3gl2 protein_coding Interval_49691 chr13 114025023 114027451 + 0 NA intron (ENSMUSG00000042348.10, intron 5 of 5) protein_coding-intron (ENSMUSG00000042348.10, intron 4 of 4) 94179 ENSMUSG00000114696.1 ENSMUSG00000114696 ENSMUST00000223997 Gm47479 TEC Interval_66009 chr16 30925555 30926030 + 0 NA intron (ENSMUSG00000116581.1, intron 2 of 2) lincRNA-intron (ENSMUSG00000116581.1, intron 2 of 2) 9837 ENSMUSG00000116581.1 ENSMUSG00000116581 ENSMUST00000232539 Gm46565 lincRNA Interval_15033 chr10 42093732 42094852 + 0 NA Intergenic Intergenic -38986 ENSMUSG00000085666.3 ENSMUSG00000085666 ENSMUST00000121229 Tdg-ps2 processed_pseudogene Interval_89171 chr2 17839078 17839639 + 0 NA Intergenic Intergenic -41374 ENSMUSG00000081851.1 ENSMUSG00000081851 ENSMUST00000120245 Gm13323 processed_pseudogene Interval_37369 chr12 65570514 65571369 + 0 NA Intergenic Intergenic 4851 ENSMUSG00000077270.1 ENSMUSG00000077270 ENSMUST00000104082 Gm22782 snoRNA Interval_70977 chr17 16966156 16966599 + 0 NA intron (ENSMUSG00000060149.7, intron 1 of 2) lincRNA-intron (ENSMUSG00000060149.7, intron 1 of 2) 14825 ENSMUSG00000060149.7 ENSMUSG00000060149 ENSMUST00000071374 BC002059 lincRNA Interval_27046 chr11 62537889 62539612 + 0 NA promoter-TSS (ENSMUSG00000018509.8) protein_coding-promoter-TSS (ENSMUSG00000018509.8) -121 ENSMUSG00000018509.8 ENSMUSG00000018509 ENSMUST00000138772 Cenpv protein_coding Interval_97948 chr2 146047183 146047418 + 0 NA promoter-TSS (ENSMUSG00000037143.17) protein_coding-promoter-TSS (ENSMUSG00000037143.17) -112586 ENSMUSG00000001767.5 ENSMUSG00000001767 ENSMUST00000147904 Crnkl1 protein_coding Interval_143520 chr7 11603326 11603552 + 0 NA Intergenic Intergenic -3401 ENSMUSG00000109694.1 ENSMUSG00000109694 ENSMUST00000211676 Gm45500 processed_pseudogene Interval_149855 chr7 102021989 102023145 + 0 NA intron (ENSMUSG00000070426.12, intron 2 of 2) protein_coding-intron (ENSMUSG00000070426.12, intron 8 of 8) -4408 ENSMUSG00000070427.4 ENSMUSG00000070427 ENSMUST00000211502 Il18bp protein_coding Interval_18023 chr10 81408735 81409597 + 0 NA promoter-TSS (ENSMUSG00000085327.1) antisense-promoter-TSS (ENSMUSG00000085327.1) -409 ENSMUSG00000085327.1 ENSMUSG00000085327 ENSMUST00000156260 Gm16104 antisense Interval_126463 chr5 88707990 88708510 + 0 NA Intergenic Intergenic -12605 ENSMUSG00000006262.15 ENSMUSG00000006262 ENSMUST00000125171 Mob1b protein_coding Interval_80709 chr18 46509973 46510348 + 0 NA intron (ENSMUSG00000033319.5, intron 2 of 2) protein_coding-intron (ENSMUSG00000033319.5, intron 2 of 2) 13075 ENSMUSG00000118116.1 ENSMUSG00000118116 ENSMUST00000235462 Gm3720 processed_pseudogene Interval_89158 chr2 17711142 17711899 + 0 NA intron (ENSMUSG00000053702.16, intron 2 of 6) protein_coding-intron (ENSMUSG00000053702.16, intron 2 of 6) 86464 ENSMUSG00000081851.1 ENSMUSG00000081851 ENSMUST00000120245 Gm13323 processed_pseudogene Interval_131006 chr5 134510266 134510515 + 0 NA intron (ENSMUSG00000063146.11, intron 7 of 16) protein_coding-intron (ENSMUSG00000063146.11, intron 7 of 15) 5888 ENSMUSG00000063146.11 ENSMUSG00000063146 ENSMUST00000202408 Clip2 protein_coding Interval_145780 chr7 38236297 38237426 + 0 NA Intergenic Intergenic -8845 ENSMUSG00000074170.5 ENSMUSG00000074170 ENSMUST00000098513 Plekhf1 protein_coding Interval_145433 chr7 34729022 34729752 + 0 NA intron (ENSMUSG00000060402.8, intron 2 of 2) protein_coding-intron (ENSMUSG00000060402.8, intron 2 of 3) 24425 ENSMUSG00000060402.8 ENSMUSG00000060402 ENSMUST00000205390 Chst8 protein_coding Interval_22517 chr11 11392270 11392850 + 0 NA intron (ENSMUSG00000020193.3, intron 6 of 7) protein_coding-intron (ENSMUSG00000020193.3, intron 6 of 7) 34952 ENSMUSG00000064766.1 ENSMUSG00000064766 ENSMUST00000082832 Gm26458 snoRNA Interval_151584 chr7 124275505 124276059 + 0 NA intron (ENSMUSG00000085899.1, intron 1 of 2) protein_coding-intron (ENSMUSG00000078591.1, intron 1 of 1) 89064 ENSMUSG00000085899.1 ENSMUSG00000085899 ENSMUST00000151884 Gm15338 sense_intronic Interval_173489 chrX 95443578 95445486 + 0 NA intron (ENSMUSG00000050332.7, intron 1 of 1) protein_coding-intron (ENSMUSG00000050332.7, intron 1 of 1) 340 ENSMUSG00000050332.7 ENSMUSG00000050332 ENSMUST00000084535 Amer1 protein_coding Interval_112086 chr4 34573570 34573824 + 0 NA intron (ENSMUSG00000040044.11, intron 2 of 2) protein_coding-intron (ENSMUSG00000040044.11, intron 17 of 19) 22746 ENSMUSG00000028291.7 ENSMUSG00000028291 ENSMUST00000132230 Akirin2 protein_coding Interval_171361 chr9 117018452 117018975 + 0 NA intron (ENSMUSG00000039607.17, intron 5 of 15) protein_coding-intron (ENSMUSG00000039607.17, intron 3 of 12) -40445 ENSMUSG00000092184.1 ENSMUSG00000092184 ENSMUST00000172565 Gm18489 processed_pseudogene Interval_2445 chr1 39414841 39415312 + 0 NA intron (ENSMUSG00000003134.10, intron 2 of 18) protein_coding-intron (ENSMUSG00000003134.10, intron 2 of 19) 4856 ENSMUSG00000102607.1 ENSMUSG00000102607 ENSMUST00000191698 Gm37265 TEC Interval_82601 chr18 75385073 75385324 + 0 NA intron (ENSMUSG00000025880.11, intron 3 of 3) protein_coding-intron (ENSMUSG00000025880.11, intron 3 of 3) 16208 ENSMUSG00000025880.11 ENSMUSG00000025880 ENSMUST00000172718 Smad7 protein_coding Interval_57619 chr15 12870092 12870923 + 0 NA intron (ENSMUSG00000022191.16, intron 15 of 34) protein_coding-intron (ENSMUSG00000022191.16, intron 15 of 34) 28411 ENSMUSG00000104911.1 ENSMUSG00000104911 ENSMUST00000198820 Gm47288 miRNA Interval_87033 chr19 45712590 45712793 + 0 NA Intergenic Intergenic 30224 ENSMUSG00000025219.13 ENSMUSG00000025219 ENSMUST00000111925 Fgf8 protein_coding Interval_98097 chr2 148038233 148041154 + 0 NA intron (ENSMUSG00000086141.7, intron 1 of 2) lincRNA-intron (ENSMUSG00000086141.7, intron 1 of 2) 510 ENSMUSG00000086141.7 ENSMUSG00000086141 ENSMUST00000132070 9030622O22Rik lincRNA Interval_103592 chr3 50930279 50930538 + 0 NA Intergenic Intergenic -8883 ENSMUSG00000102614.1 ENSMUSG00000102614 ENSMUST00000195213 Gm37843 TEC Interval_52048 chr14 34841697 34842104 + 0 NA intron (ENSMUSG00000041078.7, intron 2 of 15) protein_coding-intron (ENSMUSG00000041078.7, intron 2 of 15) -52709 ENSMUSG00000065481.1 ENSMUSG00000065481 ENSMUST00000083547 Mir346 miRNA Interval_117547 chr4 124613446 124615368 + 0 NA intron (ENSMUSG00000098760.1, intron 1 of 1) antisense-intron (ENSMUSG00000098760.1, intron 1 of 1) -42400 ENSMUSG00000090125.3 ENSMUSG00000090125 ENSMUST00000053491 Pou3f1 protein_coding Interval_27768 chr11 69865623 69866353 + 0 NA Intergenic Intergenic -10386 ENSMUSG00000001583.13 ENSMUSG00000001583 ENSMUST00000125571 Tnk1 protein_coding Interval_29279 chr11 82618401 82619646 + 0 NA Intergenic Intergenic -14330 ENSMUSG00000069796.3 ENSMUSG00000069796 ENSMUST00000125600 Gm11426 lincRNA Interval_4219 chr1 71681219 71681712 + 0 NA Intergenic Intergenic -28293 ENSMUSG00000026193.15 ENSMUSG00000026193 ENSMUST00000186736 Fn1 protein_coding Interval_172605 chrX 38237873 38238121 + 0 NA intron (ENSMUSG00000036502.14, intron 2 of 7) protein_coding-intron (ENSMUSG00000036502.14, intron 2 of 9) 14442 ENSMUSG00000036502.14 ENSMUSG00000036502 ENSMUST00000139358 Tmem255a protein_coding Interval_47417 chr13 83729503 83731592 + 0 NA promoter-TSS (ENSMUSG00000097265.1) lincRNA-promoter-TSS (ENSMUSG00000097265.1) -965 ENSMUSG00000097265.1 ENSMUSG00000097265 ENSMUST00000181705 Gm26803 lincRNA Interval_139898 chr6 112509775 112510463 + 0 NA Intergenic Intergenic -3328 ENSMUSG00000099205.1 ENSMUSG00000099205 ENSMUST00000185155 Gm27944 snRNA Interval_117408 chr4 123535300 123535774 + 0 NA intron (ENSMUSG00000028649.21, intron 5 of 9) protein_coding-intron (ENSMUSG00000028649.21, intron 5 of 92) 45306 ENSMUSG00000089588.1 ENSMUSG00000089588 ENSMUST00000158963 Gm23548 misc_RNA Interval_38202 chr12 76349490 76349976 + 0 NA TTS (ENSMUSG00000056459.14) protein_coding-TTS (ENSMUSG00000056459.14) -4352 ENSMUSG00000112096.1 ENSMUSG00000112096 ENSMUST00000220077 A430103D13Rik TEC Interval_37499 chr12 69374374 69374721 + 0 NA TTS (ENSMUSG00000044147.8) protein_coding-TTS (ENSMUSG00000044147.8) -2079 ENSMUSG00000052673.2 ENSMUSG00000052673 ENSMUST00000053451 Gm9887 antisense Interval_36309 chr12 41004229 41004472 + 0 NA Intergenic Intergenic 15902 ENSMUSG00000114130.1 ENSMUSG00000114130 ENSMUST00000222200 Gm18954 processed_pseudogene Interval_144013 chr7 18967563 18967903 + 0 NA Intergenic Intergenic -19667 ENSMUSG00000051965.8 ENSMUSG00000051965 ENSMUST00000063563 Nanos2 protein_coding Interval_105900 chr3 89980642 89980850 + 0 NA Intergenic Intergenic -12088 ENSMUSG00000105082.2 ENSMUSG00000105082 ENSMUST00000199555 Aqp10-ps unprocessed_pseudogene Interval_164564 chr9 38781544 38781844 + 0 NA Intergenic Intergenic 5077 ENSMUSG00000111188.1 ENSMUSG00000111188 ENSMUST00000215403 Gm19709 processed_pseudogene Interval_2487 chr1 39708128 39708418 + 0 NA intron (ENSMUSG00000057173.8, intron 4 of 14) protein_coding-intron (ENSMUSG00000057173.8, intron 4 of 14) 12724 ENSMUSG00000057173.8 ENSMUSG00000057173 ENSMUST00000126760 Rfx8 protein_coding Interval_159150 chr8 91088315 91088548 + 0 NA intron (ENSMUSG00000031666.15, intron 7 of 20) protein_coding-intron (ENSMUSG00000031666.15, intron 8 of 21) 18309 ENSMUSG00000031666.15 ENSMUSG00000031666 ENSMUST00000126689 Rbl2 protein_coding Interval_24154 chr11 30777650 30778040 + 0 NA intron (ENSMUSG00000040850.17, intron 1 of 4) protein_coding-intron (ENSMUSG00000040850.17, intron 1 of 46) -22884 ENSMUSG00000083990.1 ENSMUSG00000083990 ENSMUST00000121590 Gm12101 processed_pseudogene Interval_43499 chr13 31956249 31957068 + 0 NA intron (ENSMUSG00000038372.14, intron 7 of 10) protein_coding-intron (ENSMUSG00000038372.14, intron 7 of 10) -14428 ENSMUSG00000113935.1 ENSMUSG00000113935 ENSMUST00000221737 Gm35732 antisense Interval_133487 chr6 5672966 5673549 + 0 NA Intergenic Intergenic -84162 ENSMUSG00000029757.16 ENSMUSG00000029757 ENSMUST00000203520 Dync1i1 protein_coding Interval_115387 chr4 98446849 98447041 + 0 NA intron (ENSMUSG00000061859.17, intron 14 of 44) protein_coding-intron (ENSMUSG00000061859.17, intron 14 of 43) 51154 ENSMUSG00000061859.17 ENSMUSG00000061859 ENSMUST00000030290 Patj protein_coding Interval_150440 chr7 110650659 110651559 + 0 NA Intergenic Intergenic -11751 ENSMUSG00000099803.1 ENSMUSG00000099803 ENSMUST00000186888 Gm28863 antisense Interval_26333 chr11 56351458 56351810 + 0 NA Intergenic Intergenic -88394 ENSMUSG00000065635.1 ENSMUSG00000065635 ENSMUST00000083701 Gm24253 snoRNA Interval_120381 chr4 148215278 148215529 + 0 NA Intergenic Intergenic 45348 ENSMUSG00000041544.11 ENSMUSG00000041544 ENSMUST00000129734 Disp3 protein_coding Interval_30776 chr11 96399569 96400143 + 0 NA Intergenic Intergenic 7744 ENSMUSG00000075587.5 ENSMUSG00000075587 ENSMUST00000117614 Gm11531 processed_pseudogene Interval_147125 chr7 63590264 63590475 + 0 NA intron (ENSMUSG00000033510.14, intron 1 of 2) protein_coding-intron (ENSMUSG00000033510.14, intron 1 of 13) 4447 ENSMUSG00000087989.1 ENSMUSG00000087989 ENSMUST00000157364 Gm22228 snRNA Interval_163612 chr9 22532211 22533668 + 0 NA intron (ENSMUSG00000035919.16, intron 2 of 5) protein_coding-intron (ENSMUSG00000035919.16, intron 5 of 21) 20482 ENSMUSG00000035919.16 ENSMUSG00000035919 ENSMUST00000124076 Bbs9 protein_coding Interval_165739 chr9 52047196 52049114 + 0 NA promoter-TSS (ENSMUSG00000032050.18) protein_coding-promoter-TSS (ENSMUSG00000032050.18) -16 ENSMUSG00000032050.18 ENSMUSG00000032050 ENSMUST00000061352 Rdx protein_coding Interval_72408 chr17 29642726 29643010 + 0 NA exon (ENSMUSG00000090083.11, exon 8 of 8) protein_coding-exon (ENSMUSG00000090083.11, exon 8 of 8) 9350 ENSMUSG00000090083.11 ENSMUSG00000090083 ENSMUST00000172800 Rnf8 protein_coding Interval_155913 chr8 41001638 41001937 + 0 NA TTS (ENSMUSG00000045636.16) protein_coding-TTS (ENSMUSG00000045636.16) 14968 ENSMUSG00000045636.16 ENSMUSG00000045636 ENSMUST00000155055 Mtus1 protein_coding Interval_86054 chr19 36056566 36057881 + 0 NA exon (ENSMUSG00000024798.15, exon 1 of 4) protein_coding-exon (ENSMUSG00000024798.15, exon 1 of 4) 284 ENSMUSG00000024798.15 ENSMUSG00000024798 ENSMUST00000099505 Htr7 protein_coding Interval_56156 chr14 108220490 108220881 + 0 NA Intergenic Intergenic -158879 ENSMUSG00000092834.1 ENSMUSG00000092834 ENSMUST00000175093 Gm24818 miRNA Interval_128019 chr5 110319658 110320162 + 0 NA TTS (ENSMUSG00000007080.14) protein_coding-TTS (ENSMUSG00000007080.14) 2866 ENSMUSG00000007080.14 ENSMUSG00000007080 ENSMUST00000141506 Pole protein_coding Interval_41540 chr12 116144521 116144729 + 0 NA TTS (ENSMUSG00000011171.11) protein_coding-TTS (ENSMUSG00000011171.11) -5977 ENSMUSG00000093765.7 ENSMUSG00000093765 ENSMUST00000177059 Gm20658 antisense Interval_17024 chr10 70540538 70540918 + 0 NA intron (ENSMUSG00000043259.15, intron 9 of 10) protein_coding-intron (ENSMUSG00000043259.15, intron 8 of 13) -35480 ENSMUSG00000112273.1 ENSMUSG00000112273 ENSMUST00000219398 Gm29783 processed_pseudogene Interval_51929 chr14 34001045 34001455 + 0 NA promoter-TSS (ENSMUSG00000115726.1) protein_coding-promoter-TSS (ENSMUSG00000115726.1) 13932 ENSMUSG00000115726.1 ENSMUSG00000115726 ENSMUST00000227523 Gm30083 protein_coding Interval_29735 chr11 86467977 86468524 + 0 NA Intergenic Intergenic -16480 ENSMUSG00000020521.7 ENSMUSG00000020521 ENSMUST00000131246 Rnft1 protein_coding Interval_86920 chr19 44887546 44888268 + 0 NA Intergenic Intergenic 36898 ENSMUSG00000117967.1 ENSMUSG00000117967 ENSMUST00000236477 Gm5246 processed_pseudogene Interval_107059 chr3 103210838 103211368 + 0 NA Intergenic Intergenic -12128 ENSMUSG00000054379.7 ENSMUSG00000054379 ENSMUST00000090704 2410024N13Rik pseudogene Interval_52491 chr14 46941972 46942616 + 0 NA intron (ENSMUSG00000021838.17, intron 3 of 12) protein_coding-intron (ENSMUSG00000021838.17, intron 2 of 12) 12634 ENSMUSG00000099036.1 ENSMUSG00000099036 ENSMUST00000184478 Mir378c miRNA Interval_102366 chr3 22222051 22223201 + 0 NA Intergenic Intergenic -28748 ENSMUSG00000087775.1 ENSMUSG00000087775 ENSMUST00000157150 Rprl2 ribozyme Interval_148272 chr7 80216755 80217168 + 0 NA exon (ENSMUSG00000030539.13, exon 8 of 15) protein_coding-exon (ENSMUSG00000030539.13, exon 8 of 15) 7567 ENSMUSG00000108389.1 ENSMUSG00000108389 ENSMUST00000206885 Gm45206 TEC Interval_141800 chr6 134601258 134601906 + 0 NA Intergenic Intergenic 6099 ENSMUSG00000107728.1 ENSMUSG00000107728 ENSMUST00000204630 Gm38910 lincRNA Interval_10076 chr1 165641541 165643104 + 0 NA Intergenic Intergenic 2366 ENSMUSG00000104517.1 ENSMUSG00000104517 ENSMUST00000192126 Gm18407 processed_pseudogene Interval_93836 chr2 77336783 77338462 + 0 NA Intergenic Intergenic 2263 ENSMUSG00000082006.1 ENSMUSG00000082006 ENSMUST00000122325 Gm13649 processed_pseudogene Interval_66171 chr16 32113212 32114468 + 0 NA TTS (ENSMUSG00000086146.1) lincRNA-TTS (ENSMUSG00000086146.1) 4975 ENSMUSG00000086146.1 ENSMUSG00000086146 ENSMUST00000125829 Gm15729 lincRNA Interval_76706 chr17 83608028 83608402 + 0 NA intron (ENSMUSG00000045053.2, intron 1 of 1) protein_coding-intron (ENSMUSG00000045053.2, intron 1 of 1) 23680 ENSMUSG00000045053.2 ENSMUSG00000045053 ENSMUST00000051482 Kcng3 protein_coding Interval_74129 chr17 46673737 46675339 + 0 NA promoter-TSS (ENSMUSG00000023971.9) protein_coding-promoter-TSS (ENSMUSG00000023971.9) -268 ENSMUSG00000023971.9 ENSMUSG00000023971 ENSMUST00000232697 Rrp36 protein_coding Interval_17202 chr10 74937023 74937578 + 0 NA Intergenic Intergenic -29909 ENSMUSG00000040009.6 ENSMUSG00000040009 ENSMUST00000159991 Gnaz protein_coding Interval_4108 chr1 68588856 68590818 + 0 NA intron (ENSMUSG00000062209.15, intron 2 of 18) protein_coding-intron (ENSMUSG00000062209.15, intron 2 of 27) 3849 ENSMUSG00000103307.1 ENSMUSG00000103307 ENSMUST00000195836 Gm19335 TEC Interval_166195 chr9 57401953 57402947 + 0 NA intron (ENSMUSG00000063849.6, intron 3 of 3) protein_coding-intron (ENSMUSG00000063849.6, intron 5 of 6) 18868 ENSMUSG00000063849.6 ENSMUSG00000063849 ENSMUST00000215299 Ppcdc protein_coding Interval_92077 chr2 53028274 53029181 + 0 NA intron (ENSMUSG00000036053.17, intron 2 of 26) protein_coding-intron (ENSMUSG00000036053.17, intron 2 of 26) 162460 ENSMUSG00000061136.16 ENSMUSG00000061136 ENSMUST00000132031 Prpf40a protein_coding Interval_21609 chr11 3201679 3203341 + 0 NA promoter-TSS (ENSMUSG00000020454.17) protein_coding-promoter-TSS (ENSMUSG00000020454.17) -485 ENSMUSG00000020454.17 ENSMUSG00000020454 ENSMUST00000147534 Eif4enif1 protein_coding Interval_2086 chr1 36314681 36316446 + 0 NA promoter-TSS (ENSMUSG00000037447.16) protein_coding-promoter-TSS (ENSMUSG00000037447.16) 7805 ENSMUSG00000037447.16 ENSMUSG00000037447 ENSMUST00000141121 Arid5a protein_coding Interval_23814 chr11 26518120 26518359 + 0 NA intron (ENSMUSG00000064090.14, intron 6 of 11) protein_coding-intron (ENSMUSG00000064090.14, intron 7 of 12) -74987 ENSMUSG00000068314.5 ENSMUSG00000068314 ENSMUST00000089614 Gm6899 TEC Interval_150895 chr7 116219086 116219357 + 0 NA intron (ENSMUSG00000045659.18, intron 3 of 18) protein_coding-intron (ENSMUSG00000045659.18, intron 3 of 26) 63522 ENSMUSG00000108650.1 ENSMUSG00000108650 ENSMUST00000205675 Gm44867 sense_intronic Interval_130412 chr5 127438395 127439261 + 0 NA intron (ENSMUSG00000034324.16, intron 2 of 8) protein_coding-intron (ENSMUSG00000034324.16, intron 2 of 8) -114426 ENSMUSG00000034324.16 ENSMUSG00000034324 ENSMUST00000145748 Tmem132c protein_coding Interval_44372 chr13 44390879 44391539 + 0 NA promoter-TSS (ENSMUSG00000112936.1) lincRNA-promoter-TSS (ENSMUSG00000112936.1) -92 ENSMUSG00000112936.1 ENSMUSG00000112936 ENSMUST00000222879 Gm33958 lincRNA Interval_169701 chr9 100488135 100489426 + 0 NA Intergenic Intergenic -18171 ENSMUSG00000044244.18 ENSMUSG00000044244 ENSMUST00000122880 Il20rb protein_coding Interval_72533 chr17 30549301 30550834 + 0 NA intron (ENSMUSG00000118341.1, intron 1 of 6) protein_coding-intron (ENSMUSG00000062202.14, intron 1 of 11) -25164 ENSMUSG00000062202.14 ENSMUSG00000062202 ENSMUST00000236825 Btbd9 protein_coding Interval_125375 chr5 66545745 66546936 + 0 NA intron (ENSMUSG00000029207.16, intron 1 of 5) protein_coding-intron (ENSMUSG00000029207.16, intron 1 of 17) -12179 ENSMUSG00000106720.1 ENSMUSG00000106720 ENSMUST00000202051 Gm43795 TEC Interval_107419 chr3 107472035 107472601 + 0 NA intron (ENSMUSG00000027894.14, intron 10 of 11) protein_coding-intron (ENSMUSG00000027894.14, intron 10 of 11) -3613 ENSMUSG00000027894.14 ENSMUSG00000027894 ENSMUST00000166736 Slc6a17 protein_coding Interval_16272 chr10 61844077 61845066 + 0 NA intron (ENSMUSG00000058806.15, intron 1 of 4) protein_coding-intron (ENSMUSG00000058806.15, intron 22 of 24) 4640 ENSMUSG00000058806.15 ENSMUSG00000058806 ENSMUST00000153120 Col13a1 protein_coding Interval_108586 chr3 129299674 129300314 + 0 NA intron (ENSMUSG00000028024.14, intron 8 of 17) protein_coding-intron (ENSMUSG00000028024.14, intron 8 of 19) 14725 ENSMUSG00000106417.1 ENSMUSG00000106417 ENSMUST00000198498 Gm42628 processed_pseudogene Interval_48826 chr13 103751541 103751750 + 0 NA TTS (ENSMUSG00000032621.8) protein_coding-TTS (ENSMUSG00000032621.8) 17703 ENSMUSG00000032621.8 ENSMUSG00000032621 ENSMUST00000211139 Srek1 protein_coding Interval_52480 chr14 46853824 46854064 + 0 NA TTS (ENSMUSG00000055128.15) protein_coding-TTS (ENSMUSG00000055128.15) 9131 ENSMUSG00000115417.1 ENSMUSG00000115417 ENSMUST00000228424 Gm48949 sense_intronic Interval_6548 chr1 116029800 116030045 + 0 NA intron (ENSMUSG00000070695.4, intron 3 of 23) protein_coding-intron (ENSMUSG00000070695.4, intron 3 of 23) 345166 ENSMUSG00000070695.4 ENSMUSG00000070695 ENSMUST00000043725 Cntnap5a protein_coding Interval_145368 chr7 34268137 34269114 + 0 NA intron (ENSMUSG00000066571.13, intron 2 of 13) protein_coding-intron (ENSMUSG00000066571.13, intron 1 of 12) -17270 ENSMUSG00000108737.1 ENSMUSG00000108737 ENSMUST00000207005 BC060293 TEC Interval_95180 chr2 104576054 104576470 + 0 NA Intergenic Intergenic -2683 ENSMUSG00000077236.1 ENSMUSG00000077236 ENSMUST00000104048 Gm22439 snoRNA Interval_91196 chr2 35845623 35846414 + 0 NA exon (ENSMUSG00000106994.1, exon 1 of 1) TEC-exon (ENSMUSG00000106994.1, exon 1 of 1) 1823 ENSMUSG00000106994.1 ENSMUSG00000106994 ENSMUST00000202084 Gm10829 TEC Interval_11747 chr1 185162972 185163193 + 0 NA Intergenic Intergenic 71091 ENSMUSG00000104461.1 ENSMUSG00000104461 ENSMUST00000195649 Gm37662 lincRNA Interval_52414 chr14 45813857 45814738 + 0 NA intron (ENSMUSG00000085866.1, intron 1 of 3) lincRNA-intron (ENSMUSG00000085866.1, intron 1 of 3) 44249 ENSMUSG00000084276.1 ENSMUSG00000084276 ENSMUST00000121261 Gm8317 processed_pseudogene Interval_35668 chr12 27182464 27183602 + 0 NA Intergenic Intergenic -22530 ENSMUSG00000094002.3 ENSMUSG00000094002 ENSMUST00000183238 Gm9866 lincRNA Interval_141751 chr6 134222228 134223027 + 0 NA intron (ENSMUSG00000030199.16, intron 2 of 4) protein_coding-intron (ENSMUSG00000030199.16, intron 2 of 7) -10973 ENSMUSG00000030199.16 ENSMUSG00000030199 ENSMUST00000145869 Etv6 protein_coding Interval_63223 chr15 99806182 99806947 + 0 NA exon (ENSMUSG00000023022.14, exon 6 of 11) protein_coding-exon (ENSMUSG00000023022.14, exon 6 of 11) -3438 ENSMUSG00000065643.1 ENSMUSG00000065643 ENSMUST00000083709 Gm25897 snRNA Interval_173121 chrX 72685181 72685638 + 0 NA Intergenic Intergenic 7436 ENSMUSG00000082657.1 ENSMUSG00000082657 ENSMUST00000121470 Gm14736 processed_pseudogene Interval_94678 chr2 93252419 93253630 + 0 NA intron (ENSMUSG00000027217.13, intron 2 of 9) protein_coding-intron (ENSMUSG00000027217.13, intron 2 of 9) 59491 ENSMUSG00000027217.13 ENSMUSG00000027217 ENSMUST00000152141 Tspan18 protein_coding Interval_106015 chr3 90642837 90643122 + 0 NA Intergenic Intergenic 8887 ENSMUSG00000105644.1 ENSMUSG00000105644 ENSMUST00000195941 Gm19739 processed_pseudogene Interval_23357 chr11 21741151 21741523 + 0 NA intron (ENSMUSG00000020319.9, intron 3 of 3) protein_coding-intron (ENSMUSG00000020319.9, intron 12 of 17) 46208 ENSMUSG00000020319.9 ENSMUSG00000020319 ENSMUST00000128794 Wdpcp protein_coding Interval_98007 chr2 146621123 146621552 + 0 NA Intergenic Intergenic 78406 ENSMUSG00000085796.1 ENSMUSG00000085796 ENSMUST00000147212 4933406D12Rik lincRNA Interval_28178 chr11 73567444 73568763 + 0 NA Intergenic Intergenic 24905 ENSMUSG00000095095.2 ENSMUSG00000095095 ENSMUST00000071553 Olfr385 protein_coding Interval_94453 chr2 91322867 91323668 + 0 NA intron (ENSMUSG00000040591.18, intron 3 of 3) protein_coding-intron (ENSMUSG00000040591.18, intron 3 of 8) 20922 ENSMUSG00000081248.1 ENSMUSG00000081248 ENSMUST00000120422 Gm13787 processed_pseudogene Interval_13668 chr10 20837065 20837378 + 0 NA Intergenic Intergenic 41752 ENSMUSG00000111177.1 ENSMUSG00000111177 ENSMUST00000213102 Rps2-ps3 processed_pseudogene Interval_2642 chr1 42864949 42866574 + 0 NA TTS (ENSMUSG00000077448.1) snoRNA-TTS (ENSMUSG00000077448.1) 1057 ENSMUSG00000077448.1 ENSMUSG00000077448 ENSMUST00000104260 Gm23126 snoRNA Interval_93416 chr2 72939369 72939681 + 0 NA intron (ENSMUSG00000027109.16, intron 4 of 4) protein_coding-intron (ENSMUSG00000027109.16, intron 5 of 5) 11462 ENSMUSG00000092851.1 ENSMUSG00000092851 ENSMUST00000175110 Gm25960 miRNA Interval_28749 chr11 78071951 78072976 + 0 NA promoter-TSS (ENSMUSG00000065401.1) miRNA-promoter-TSS (ENSMUSG00000065401.1) -542 ENSMUSG00000065401.1 ENSMUSG00000065401 ENSMUST00000083467 Mir144 miRNA Interval_95474 chr2 109925747 109926189 + 0 NA intron (ENSMUSG00000050199.13, intron 1 of 16) protein_coding-intron (ENSMUSG00000050199.13, intron 1 of 17) -12649 ENSMUSG00000063751.6 ENSMUSG00000063751 ENSMUST00000146110 Platr8 processed_transcript Interval_17403 chr10 76381142 76382396 + 0 NA intron (ENSMUSG00000001151.10, intron 17 of 29) protein_coding-intron (ENSMUSG00000001151.10, intron 29 of 41) -7246 ENSMUSG00000101695.1 ENSMUSG00000101695 ENSMUST00000187079 1700094J05Rik antisense Interval_134311 chr6 24893332 24895026 + 0 NA TTS (ENSMUSG00000077196.1) snoRNA-TTS (ENSMUSG00000077196.1) 621 ENSMUSG00000077196.1 ENSMUSG00000077196 ENSMUST00000104008 Gm22267 snoRNA Interval_143270 chr7 4878392 4879295 + 0 NA intron (ENSMUSG00000086784.2, intron 1 of 5) protein_coding-intron (ENSMUSG00000086784.2, intron 1 of 5) 1690 ENSMUSG00000086784.2 ENSMUSG00000086784 ENSMUST00000125249 Isoc2a protein_coding Interval_20490 chr10 117905662 117906764 + 0 NA Intergenic Intergenic -19246 ENSMUSG00000112500.1 ENSMUSG00000112500 ENSMUST00000217950 4933411E08Rik lincRNA Interval_89675 chr2 24467380 24467862 + 0 NA intron (ENSMUSG00000085057.7, intron 3 of 5) protein_coding-intron (ENSMUSG00000026976.15, intron 2 of 11) 7943 ENSMUSG00000026976.15 ENSMUSG00000026976 ENSMUST00000152614 Pax8 protein_coding Interval_173400 chrX 88582502 88583638 + 0 NA Intergenic Intergenic -10010 ENSMUSG00000081892.2 ENSMUSG00000081892 ENSMUST00000118653 Gm8864 processed_pseudogene Interval_32936 chr11 113231770 113232619 + 0 NA Intergenic Intergenic -22525 ENSMUSG00000085421.1 ENSMUSG00000085421 ENSMUST00000130373 4732490B19Rik lincRNA Interval_130906 chr5 133834518 133835159 + 0 NA Intergenic Intergenic 7681 ENSMUSG00000106067.1 ENSMUSG00000106067 ENSMUST00000198842 Gm7902 processed_pseudogene Interval_37806 chr12 72093841 72094193 + 0 NA TTS (ENSMUSG00000005078.16) protein_coding-TTS (ENSMUSG00000005078.16) 4312 ENSMUSG00000005078.16 ENSMUSG00000005078 ENSMUST00000145752 Jkamp protein_coding Interval_56540 chr14 120179079 120179619 + 0 NA intron (ENSMUSG00000115146.1, intron 1 of 8) lincRNA-intron (ENSMUSG00000115146.1, intron 1 of 8) -37720 ENSMUSG00000115146.1 ENSMUSG00000115146 ENSMUST00000226598 Gm4681 lincRNA Interval_115580 chr4 101054633 101054927 + 0 NA exon (ENSMUSG00000102578.1, exon 1 of 1) TEC-exon (ENSMUSG00000102578.1, exon 1 of 1) 482 ENSMUSG00000102578.1 ENSMUSG00000102578 ENSMUST00000192528 Gm10576 TEC Interval_47332 chr13 81518393 81518780 + 0 NA intron (ENSMUSG00000069170.14, intron 29 of 34) protein_coding-intron (ENSMUSG00000069170.14, intron 33 of 89) 17784 ENSMUSG00000114454.1 ENSMUSG00000114454 ENSMUST00000224788 Gm48567 processed_pseudogene Interval_68068 chr16 64836298 64837131 + 0 NA intron (ENSMUSG00000047141.5, intron 1 of 8) protein_coding-intron (ENSMUSG00000047141.5, intron 1 of 8) 14938 ENSMUSG00000047141.5 ENSMUSG00000047141 ENSMUST00000052588 Zfp654 protein_coding Interval_28245 chr11 74660163 74661004 + 0 NA intron (ENSMUSG00000020741.17, intron 8 of 23) protein_coding-intron (ENSMUSG00000020741.17, intron 8 of 25) 11043 ENSMUSG00000020741.17 ENSMUSG00000020741 ENSMUST00000128155 Cluh protein_coding Interval_161249 chr8 119224727 119224945 + 0 NA intron (ENSMUSG00000031841.19, intron 2 of 3) protein_coding-intron (ENSMUSG00000031841.19, intron 8 of 13) 73371 ENSMUSG00000031841.19 ENSMUSG00000031841 ENSMUST00000151842 Cdh13 protein_coding Interval_39815 chr12 98687941 98689464 + 0 NA exon (ENSMUSG00000021009.15, exon 13 of 19) protein_coding-exon (ENSMUSG00000021009.15, exon 13 of 19) -4952 ENSMUSG00000021009.15 ENSMUSG00000021009 ENSMUST00000222071 Ptpn21 protein_coding Interval_64903 chr16 17096160 17096494 + 0 NA TTS (ENSMUSG00000022771.17) protein_coding-TTS (ENSMUSG00000022771.17) 3512 ENSMUSG00000116645.1 ENSMUSG00000116645 ENSMUST00000232323 Gm49584 antisense Interval_916 chr1 13142133 13143143 + 0 NA exon (ENSMUSG00000005886.14, exon 23 of 23) protein_coding-exon (ENSMUSG00000005886.14, exon 23 of 23) 3992 ENSMUSG00000005886.14 ENSMUSG00000005886 ENSMUST00000145280 Ncoa2 protein_coding Interval_40537 chr12 105572370 105573050 + 0 NA intron (ENSMUSG00000021070.6, intron 1 of 2) protein_coding-intron (ENSMUSG00000021070.6, intron 1 of 2) 9484 ENSMUSG00000021070.6 ENSMUSG00000021070 ENSMUST00000001652 Bdkrb2 protein_coding Interval_115666 chr4 101860653 101863028 + 0 NA Intergenic Intergenic -13507 ENSMUSG00000081121.1 ENSMUSG00000081121 ENSMUST00000120788 Gm12791 processed_pseudogene Interval_18947 chr10 93299294 93300129 + 0 NA intron (ENSMUSG00000008398.16, intron 1 of 3) protein_coding-intron (ENSMUSG00000008398.16, intron 1 of 4) 11258 ENSMUSG00000008398.16 ENSMUSG00000008398 ENSMUST00000133365 Elk3 protein_coding Interval_82261 chr18 69734940 69735546 + 0 NA Intergenic Intergenic 42802 ENSMUSG00000064706.1 ENSMUSG00000064706 ENSMUST00000082772 Gm22508 misc_RNA Interval_59705 chr15 58758594 58759433 + 0 NA Intergenic Intergenic 22938 ENSMUSG00000093677.1 ENSMUSG00000093677 ENSMUST00000176387 Gm20712 sense_overlapping Interval_68505 chr16 78280239 78280429 + 0 NA intron (ENSMUSG00000109841.2, intron 1 of 2) processed_transcript-intron (ENSMUSG00000109841.2, intron 1 of 2) 14653 ENSMUSG00000109841.2 ENSMUSG00000109841 ENSMUST00000210555 E330011O21Rik processed_transcript Interval_168293 chr9 78474976 78478161 + 0 NA Intergenic Intergenic 2067 ENSMUSG00000076138.1 ENSMUSG00000076138 ENSMUST00000102184 Gm26377 miRNA Interval_48183 chr13 97052391 97053085 + 0 NA Intergenic Intergenic -14548 ENSMUSG00000041817.14 ENSMUSG00000041817 ENSMUST00000042517 Fam169a protein_coding Interval_138387 chr6 87790885 87791214 + 0 NA promoter-TSS (ENSMUSG00000030055.16) protein_coding-promoter-TSS (ENSMUSG00000030055.16) -974 ENSMUSG00000030055.16 ENSMUSG00000030055 ENSMUST00000032135 Rab43 protein_coding Interval_171979 chr9 123142912 123143160 + 0 NA Intergenic Intergenic 4570 ENSMUSG00000111490.1 ENSMUSG00000111490 ENSMUST00000216113 Gm47159 TEC Interval_57191 chr15 7271083 7271295 + 0 NA intron (ENSMUSG00000042961.13, intron 6 of 15) protein_coding-intron (ENSMUSG00000042961.13, intron 6 of 21) -16421 ENSMUSG00000042961.13 ENSMUSG00000042961 ENSMUST00000159726 Egflam protein_coding Interval_124256 chr5 42890339 42890963 + 0 NA Intergenic Intergenic 73958 ENSMUSG00000106622.2 ENSMUSG00000106622 ENSMUST00000199726 Gm5554 processed_pseudogene Interval_110321 chr3 156825416 156825660 + 0 NA intron (ENSMUSG00000040037.13, intron 1 of 6) protein_coding-intron (ENSMUSG00000040037.13, intron 1 of 6) 9501 ENSMUSG00000083122.1 ENSMUSG00000083122 ENSMUST00000117320 Gm15578 unprocessed_pseudogene Interval_65925 chr16 30282962 30284388 + 0 NA promoter-TSS (ENSMUSG00000052316.9) protein_coding-promoter-TSS (ENSMUSG00000052316.9) -419 ENSMUSG00000052316.9 ENSMUSG00000052316 ENSMUST00000064606 Lrrc15 protein_coding Interval_14796 chr10 39982769 39983771 + 0 NA intron (ENSMUSG00000038528.15, intron 1 of 2) protein_coding-intron (ENSMUSG00000038528.15, intron 1 of 2) 3369 ENSMUSG00000038528.15 ENSMUSG00000038528 ENSMUST00000170505 Mfsd4b5 protein_coding Interval_165046 chr9 44125978 44126413 + 0 NA intron (ENSMUSG00000097617.2, intron 1 of 1) antisense-intron (ENSMUSG00000097617.2, intron 1 of 1) 8073 ENSMUSG00000097467.2 ENSMUSG00000097467 ENSMUST00000213646 Gm26737 antisense Interval_33191 chr11 115115399 115116110 + 0 NA TTS (ENSMUSG00000047798.15) protein_coding-TTS (ENSMUSG00000047798.15) 11037 ENSMUSG00000047798.15 ENSMUSG00000047798 ENSMUST00000149335 Cd300lf protein_coding Interval_134056 chr6 18224822 18225598 + 0 NA intron (ENSMUSG00000041301.15, intron 7 of 27) protein_coding-intron (ENSMUSG00000041301.15, intron 7 of 26) -30014 ENSMUSG00000041301.15 ENSMUSG00000041301 ENSMUST00000140532 Cftr protein_coding Interval_38150 chr12 75975070 75976462 + 0 NA intron (ENSMUSG00000063450.14, intron 51 of 114) protein_coding-intron (ENSMUSG00000063450.14, intron 51 of 115) 66663 ENSMUSG00000092922.1 ENSMUSG00000092922 ENSMUST00000175181 Mir5101 miRNA Interval_109050 chr3 135468627 135470364 + 0 NA Intergenic Intergenic -14137 ENSMUSG00000105404.1 ENSMUSG00000105404 ENSMUST00000200141 Gm42807 processed_pseudogene Interval_119132 chr4 135761952 135762923 + 0 NA intron (ENSMUSG00000037139.15, intron 1 of 36) protein_coding-intron (ENSMUSG00000037139.15, intron 1 of 36) -5742 ENSMUSG00000082743.1 ENSMUSG00000082743 ENSMUST00000119054 Gm12988 processed_pseudogene Interval_156649 chr8 56437984 56438893 + 0 NA Intergenic Intergenic -15077 ENSMUSG00000110309.1 ENSMUSG00000110309 ENSMUST00000209962 Gm7419 processed_pseudogene Interval_68147 chr16 65708680 65709702 + 0 NA Intergenic Intergenic -84180 ENSMUSG00000116622.1 ENSMUSG00000116622 ENSMUST00000231905 Gm5221 processed_pseudogene Interval_174491 chrX 153346157 153346412 + 0 NA intron (ENSMUSG00000041649.13, intron 2 of 6) protein_coding-intron (ENSMUSG00000041649.13, intron 2 of 6) 57786 ENSMUSG00000080743.2 ENSMUSG00000080743 ENSMUST00000122032 Gm7150 processed_pseudogene Interval_16991 chr10 70306848 70307567 + 0 NA Intergenic Intergenic -19031 ENSMUSG00000052426.4 ENSMUSG00000052426 ENSMUST00000064271 Gm9877 pseudogene Interval_60579 chr15 75327176 75327409 + 0 NA promoter-TSS (ENSMUSG00000099414.1) unprocessed_pseudogene-promoter-TSS (ENSMUSG00000099414.1) -564 ENSMUSG00000099414.1 ENSMUSG00000099414 ENSMUST00000188280 Gm28113 unprocessed_pseudogene Interval_112472 chr4 41452106 41452541 + 0 NA intron (ENSMUSG00000028438.16, intron 3 of 3) protein_coding-intron (ENSMUSG00000028438.16, intron 1 of 9) 12523 ENSMUSG00000028438.16 ENSMUSG00000028438 ENSMUST00000131532 Kif24 protein_coding Interval_113262 chr4 52556447 52556783 + 0 NA Intergenic Intergenic -50591 ENSMUSG00000028314.6 ENSMUSG00000028314 ENSMUST00000107671 Toporsl protein_coding Interval_149126 chr7 94356935 94357883 + 0 NA intron (ENSMUSG00000108532.1, intron 2 of 2) lincRNA-intron (ENSMUSG00000108532.1, intron 2 of 2) 15163 ENSMUSG00000108315.1 ENSMUSG00000108315 ENSMUST00000206678 Gm44601 lincRNA Interval_71329 chr17 22321772 22322008 + 0 NA Intergenic Intergenic -7053 ENSMUSG00000117284.1 ENSMUSG00000117284 ENSMUST00000233465 Gm7072 protein_coding Interval_142204 chr6 138426752 138427997 + 0 NA promoter-TSS (ENSMUSG00000030226.12) protein_coding-promoter-TSS (ENSMUSG00000030226.12) -212 ENSMUSG00000030226.12 ENSMUSG00000030226 ENSMUST00000162932 Lmo3 protein_coding Interval_137473 chr6 72663016 72664637 + 0 NA intron (ENSMUSG00000055799.13, intron 2 of 5) protein_coding-intron (ENSMUSG00000055799.13, intron 3 of 11) 7578 ENSMUSG00000055799.13 ENSMUSG00000055799 ENSMUST00000182651 Tcf7l1 protein_coding Interval_168314 chr9 78623314 78623965 + 0 NA intron (ENSMUSG00000046186.8, intron 2 of 32) protein_coding-intron (ENSMUSG00000046186.8, intron 2 of 32) 6489 ENSMUSG00000091147.1 ENSMUSG00000091147 ENSMUST00000171278 4921509A06Rik antisense Interval_165401 chr9 47513936 47514879 + 0 NA Intergenic Intergenic 11315 ENSMUSG00000094895.1 ENSMUSG00000094895 ENSMUST00000179708 Gm22286 snRNA Interval_166821 chr9 62989294 62989535 + 0 NA Intergenic Intergenic -1490 ENSMUSG00000032405.10 ENSMUSG00000032405 ENSMUST00000215455 Pias1 protein_coding Interval_54337 chr14 67780872 67782199 + 0 NA intron (ENSMUSG00000044447.5, intron 35 of 51) protein_coding-intron (ENSMUSG00000044447.5, intron 35 of 51) -16576 ENSMUSG00000044447.5 ENSMUSG00000044447 ENSMUST00000224823 Dock5 protein_coding Interval_100473 chr2 169293117 169293713 + 0 NA Intergenic Intergenic 58424 ENSMUSG00000085369.1 ENSMUSG00000085369 ENSMUST00000152494 9430093N23Rik lincRNA Interval_91258 chr2 36770011 36770912 + 0 NA Intergenic Intergenic 1773 ENSMUSG00000082251.1 ENSMUSG00000082251 ENSMUST00000120100 Gm13438 processed_pseudogene Interval_150150 chr7 107400413 107400654 + 0 NA intron (ENSMUSG00000062542.11, intron 1 of 1) protein_coding-intron (ENSMUSG00000062542.11, intron 1 of 6) 34461 ENSMUSG00000109078.1 ENSMUSG00000109078 ENSMUST00000208516 Gm19033 processed_pseudogene Interval_54880 chr14 75962669 75963319 + 0 NA exon (ENSMUSG00000046523.5, exon 2 of 2) protein_coding-exon (ENSMUSG00000046523.5, exon 2 of 2) 7985 ENSMUSG00000046523.5 ENSMUSG00000046523 ENSMUST00000050120 Kctd4 protein_coding Interval_11759 chr1 185252757 185253945 + 0 NA intron (ENSMUSG00000039318.12, intron 17 of 34) protein_coding-intron (ENSMUSG00000039318.12, intron 17 of 34) -5462 ENSMUSG00000103613.1 ENSMUSG00000103613 ENSMUST00000193245 Gm34882 antisense Interval_144551 chr7 25840299 25841706 + 0 NA Intergenic Intergenic -12125 ENSMUSG00000090467.3 ENSMUSG00000090467 ENSMUST00000165488 Gm4613 processed_pseudogene Interval_148974 chr7 90547719 90548043 + 0 NA intron (ENSMUSG00000052572.19, intron 3 of 27) protein_coding-intron (ENSMUSG00000052572.19, intron 3 of 27) -71886 ENSMUSG00000030614.8 ENSMUSG00000030614 ENSMUST00000123622 Tmem126b protein_coding Interval_130856 chr5 132644431 132645237 + 0 NA Intergenic Intergenic 98778 ENSMUSG00000105809.1 ENSMUSG00000105809 ENSMUST00000196866 Gm42626 lincRNA Interval_78319 chr18 11944576 11945241 + 0 NA exon (ENSMUSG00000040957.15, exon 9 of 9) protein_coding-exon (ENSMUSG00000040957.15, exon 9 of 9) 31777 ENSMUSG00000117430.1 ENSMUSG00000117430 ENSMUST00000234828 Gm49968 TEC Interval_136713 chr6 58406371 58406678 + 0 NA exon (ENSMUSG00000093702.1, exon 1 of 1) unprocessed_pseudogene-exon (ENSMUSG00000093702.1, exon 1 of 1) 803 ENSMUSG00000093702.1 ENSMUSG00000093702 ENSMUST00000176809 Vmn1r-ps20 unprocessed_pseudogene Interval_109952 chr3 152134632 152134964 + 0 NA intron (ENSMUSG00000039131.15, intron 2 of 2) protein_coding-intron (ENSMUSG00000039131.15, intron 2 of 5) 11990 ENSMUSG00000039131.15 ENSMUSG00000039131 ENSMUST00000133102 Gipc2 protein_coding Interval_119600 chr4 138656526 138656798 + 0 NA Intergenic Intergenic -50132 ENSMUSG00000028753.12 ENSMUSG00000028753 ENSMUST00000133319 Vwa5b1 protein_coding Interval_140556 chr6 119496228 119497157 + 0 NA intron (ENSMUSG00000030170.14, intron 1 of 4) protein_coding-intron (ENSMUSG00000030170.14, intron 1 of 4) 17024 ENSMUSG00000030019.6 ENSMUSG00000030019 ENSMUST00000032094 Fbxl14 protein_coding Interval_16817 chr10 68356986 68357321 + 0 NA Intergenic Intergenic -36011 ENSMUSG00000112157.1 ENSMUSG00000112157 ENSMUST00000218225 4930545H06Rik lincRNA Interval_85909 chr19 32936916 32937418 + 0 NA Intergenic Intergenic 33141 ENSMUSG00000084512.1 ENSMUSG00000084512 ENSMUST00000122563 Gm22482 misc_RNA Interval_162152 chr8 125540743 125541312 + 0 NA intron (ENSMUSG00000001995.9, intron 1 of 22) protein_coding-intron (ENSMUSG00000001995.9, intron 1 of 21) 28781 ENSMUSG00000001995.9 ENSMUSG00000001995 ENSMUST00000212604 Sipa1l2 protein_coding Interval_9591 chr1 159911063 159911561 + 0 NA intron (ENSMUSG00000015829.13, intron 18 of 22) protein_coding-intron (ENSMUSG00000015829.13, intron 17 of 21) 20414 ENSMUSG00000103719.1 ENSMUSG00000103719 ENSMUST00000195328 Gm38039 antisense Interval_6929 chr1 120795432 120795664 + 0 NA Intergenic Intergenic -20952 ENSMUSG00000101922.1 ENSMUSG00000101922 ENSMUST00000189213 Gm29345 lincRNA Interval_151166 chr7 118944412 118944800 + 0 NA intron (ENSMUSG00000073856.11, intron 7 of 7) protein_coding-intron (ENSMUSG00000073856.11, intron 8 of 8) 25080 ENSMUSG00000109517.1 ENSMUSG00000109517 ENSMUST00000208287 Gm44763 antisense Interval_127888 chr5 108642362 108642583 + 0 NA intron (ENSMUSG00000013495.15, intron 1 of 2) protein_coding-intron (ENSMUSG00000013495.15, intron 6 of 10) 792 ENSMUSG00000013495.15 ENSMUSG00000013495 ENSMUST00000198346 Tmem175 protein_coding Interval_126163 chr5 80706721 80706938 + 0 NA Intergenic Intergenic -186825 ENSMUSG00000065235.1 ENSMUSG00000065235 ENSMUST00000083301 Gm22974 snRNA Interval_102545 chr3 27655740 27657735 + 0 NA intron (ENSMUSG00000039286.12, intron 1 of 4) protein_coding-intron (ENSMUSG00000039286.12, intron 1 of 25) 53661 ENSMUSG00000039286.12 ENSMUSG00000039286 ENSMUST00000193779 Fndc3b protein_coding Interval_145939 chr7 42483186 42484890 + 0 NA intron (ENSMUSG00000092416.2, intron 5 of 6) protein_coding-intron (ENSMUSG00000092416.2, intron 4 of 4) -4763 ENSMUSG00000092505.1 ENSMUSG00000092505 ENSMUST00000173599 Gm19246 processed_pseudogene Interval_158485 chr8 84001230 84001746 + 0 NA promoter-TSS (ENSMUSG00000046408.15) protein_coding-promoter-TSS (ENSMUSG00000046408.15) -89 ENSMUSG00000046408.15 ENSMUSG00000046408 ENSMUST00000140120 1700067K01Rik protein_coding Interval_151756 chr7 126445462 126447283 + 0 NA TTS (ENSMUSG00000030727.12) protein_coding-TTS (ENSMUSG00000030727.12) 1273 ENSMUSG00000030730.12 ENSMUSG00000030730 ENSMUST00000146973 Atp2a1 protein_coding Interval_28879 chr11 79002147 79004347 + 0 NA Intergenic Intergenic -20350 ENSMUSG00000085941.1 ENSMUSG00000085941 ENSMUST00000143473 Gm11201 antisense Interval_145462 chr7 34919508 34920279 + 0 NA intron (ENSMUSG00000063931.14, intron 1 of 14) protein_coding-intron (ENSMUSG00000063931.14, intron 1 of 14) 24092 ENSMUSG00000077469.1 ENSMUSG00000077469 ENSMUST00000104281 Gm25922 snoRNA Interval_22629 chr11 12390138 12390836 + 0 NA intron (ENSMUSG00000020173.17, intron 1 of 11) protein_coding-intron (ENSMUSG00000020173.17, intron 1 of 14) 21657 ENSMUSG00000020173.17 ENSMUSG00000020173 ENSMUST00000146067 Cobl protein_coding Interval_162055 chr8 124764983 124766029 + 0 NA exon (ENSMUSG00000110666.1, exon 1 of 1) processed_pseudogene-exon (ENSMUSG00000110666.1, exon 1 of 1) 245 ENSMUSG00000110666.1 ENSMUSG00000110666 ENSMUST00000212092 Gm9172 processed_pseudogene Interval_126004 chr5 76771211 76771715 + 0 NA intron (ENSMUSG00000036377.19, intron 3 of 11) protein_coding-intron (ENSMUSG00000036377.19, intron 2 of 10) -28950 ENSMUSG00000083874.1 ENSMUSG00000083874 ENSMUST00000121248 Gm7494 processed_pseudogene Interval_109631 chr3 145575690 145576860 + 0 NA promoter-TSS (ENSMUSG00000074182.8) protein_coding-promoter-TSS (ENSMUSG00000074182.8) 28 ENSMUSG00000074182.8 ENSMUSG00000074182 ENSMUST00000197474 Znhit6 protein_coding Interval_117542 chr4 124574632 124576700 + 0 NA intron (ENSMUSG00000098760.1, intron 1 of 1) antisense-intron (ENSMUSG00000098760.1, intron 1 of 1) 6476 ENSMUSG00000073759.6 ENSMUSG00000073759 ENSMUST00000133499 4933407E24Rik lincRNA Interval_6546 chr1 115799238 115799764 + 0 NA intron (ENSMUSG00000070695.4, intron 1 of 23) protein_coding-intron (ENSMUSG00000070695.4, intron 1 of 23) 114745 ENSMUSG00000070695.4 ENSMUSG00000070695 ENSMUST00000043725 Cntnap5a protein_coding Interval_143891 chr7 16970119 16970377 + 0 NA Intergenic Intergenic 10569 ENSMUSG00000041141.7 ENSMUSG00000041141 ENSMUST00000038163 Pnmal1 protein_coding Interval_136003 chr6 49377284 49378502 + 0 NA intron (ENSMUSG00000047115.15, intron 3 of 5) protein_coding-intron (ENSMUSG00000047115.15, intron 3 of 6) -9586 ENSMUSG00000047115.15 ENSMUSG00000047115 ENSMUST00000203182 Fam221a protein_coding Interval_134011 chr6 17702816 17703057 + 0 NA promoter-TSS (ENSMUSG00000098988.1) misc_RNA-promoter-TSS (ENSMUSG00000098988.1) -295 ENSMUSG00000098988.1 ENSMUSG00000098988 ENSMUST00000184021 Gm28008 misc_RNA Interval_33145 chr11 114732873 114733266 + 0 NA exon (ENSMUSG00000034706.16, exon 2 of 13) protein_coding-exon (ENSMUSG00000034706.16, exon 2 of 13) 5661 ENSMUSG00000034706.16 ENSMUSG00000034706 ENSMUST00000130692 Dnaic2 protein_coding Interval_4321 chr1 72714763 72716246 + 0 NA Intergenic Intergenic 4190 ENSMUSG00000046330.10 ENSMUSG00000046330 ENSMUST00000211963 Rpl37a protein_coding Interval_55177 chr14 79030621 79030845 + 0 NA intron (ENSMUSG00000058997.8, intron 20 of 25) protein_coding-intron (ENSMUSG00000058997.8, intron 20 of 44) -64165 ENSMUSG00000115539.1 ENSMUSG00000115539 ENSMUST00000227296 Gm6997 processed_pseudogene Interval_63911 chr16 4532857 4534265 + 0 NA intron (ENSMUSG00000022519.14, intron 1 of 1) protein_coding-intron (ENSMUSG00000022519.14, intron 1 of 3) -5747 ENSMUSG00000083585.1 ENSMUSG00000083585 ENSMUST00000122114 Gm15885 processed_pseudogene Interval_171970 chr9 123055638 123056652 + 0 NA intron (ENSMUSG00000025787.6, intron 6 of 7) protein_coding-intron (ENSMUSG00000025787.6, intron 9 of 13) 21419 ENSMUSG00000025787.6 ENSMUSG00000025787 ENSMUST00000214552 Tgm4 protein_coding Interval_88245 chr19 61104135 61104394 + 0 NA intron (ENSMUSG00000074733.14, intron 3 of 6) protein_coding-intron (ENSMUSG00000074733.14, intron 3 of 6) 36553 ENSMUSG00000074733.14 ENSMUSG00000074733 ENSMUST00000148569 Zfp950 protein_coding Interval_97689 chr2 142822177 142822444 + 0 NA intron (ENSMUSG00000038844.10, intron 12 of 26) protein_coding-intron (ENSMUSG00000038844.10, intron 12 of 25) 35414 ENSMUSG00000088134.1 ENSMUSG00000088134 ENSMUST00000157509 Gm22310 snoRNA Interval_58197 chr15 30655824 30656241 + 0 NA intron (ENSMUSG00000022240.10, intron 1 of 1) protein_coding-intron (ENSMUSG00000022240.10, intron 7 of 22) -29411 ENSMUSG00000115337.1 ENSMUSG00000115337 ENSMUST00000228499 4930570B17Rik antisense Interval_33559 chr11 117207607 117207999 + 0 NA intron (ENSMUSG00000059248.13, intron 1 of 11) protein_coding-intron (ENSMUSG00000059248.13, intron 1 of 11) 52734 ENSMUSG00000020823.16 ENSMUSG00000020823 ENSMUST00000153437 Sec14l1 protein_coding Interval_171192 chr9 115100254 115101225 + 0 NA intron (ENSMUSG00000040875.12, intron 1 of 4) protein_coding-intron (ENSMUSG00000040875.12, intron 1 of 9) 85319 ENSMUSG00000098127.1 ENSMUSG00000098127 ENSMUST00000183244 Gm4665 antisense Interval_155957 chr8 41267853 41268052 + 0 NA intron (ENSMUSG00000031592.10, intron 7 of 38) protein_coding-intron (ENSMUSG00000031592.10, intron 6 of 37) 28174 ENSMUSG00000031592.10 ENSMUSG00000031592 ENSMUST00000211247 Pcm1 protein_coding Interval_61396 chr15 81334236 81335371 + 0 NA intron (ENSMUSG00000022404.8, intron 4 of 7) protein_coding-intron (ENSMUSG00000022404.8, intron 4 of 8) 25974 ENSMUSG00000022404.8 ENSMUSG00000022404 ENSMUST00000231078 Slc25a17 protein_coding Interval_114519 chr4 82048320 82049279 + 0 NA exon (ENSMUSG00000087110.1, exon 4 of 6) lincRNA-exon (ENSMUSG00000087110.1, exon 4 of 6) 12422 ENSMUSG00000092661.1 ENSMUSG00000092661 ENSMUST00000174920 Gm22402 miRNA Interval_144433 chr7 25120196 25122620 + 0 NA promoter-TSS (ENSMUSG00000008496.19) protein_coding-promoter-TSS (ENSMUSG00000008496.19) 11104 ENSMUSG00000008496.19 ENSMUSG00000008496 ENSMUST00000175754 Pou2f2 protein_coding Interval_23145 chr11 20164854 20166760 + 0 NA Intergenic Intergenic -19463 ENSMUSG00000085035.1 ENSMUSG00000085035 ENSMUST00000156150 Gm12031 lincRNA Interval_84523 chr19 12152368 12153138 + 0 NA Intergenic Intergenic 17359 ENSMUSG00000108889.2 ENSMUSG00000108889 ENSMUST00000207679 Olfr1555-ps1 protein_coding Interval_133241 chr5 150806123 150807736 + 0 NA intron (ENSMUSG00000034021.15, intron 34 of 34) protein_coding-intron (ENSMUSG00000034021.15, intron 34 of 34) -15930 ENSMUSG00000106692.1 ENSMUSG00000106692 ENSMUST00000201101 Gm36447 lincRNA Interval_76424 chr17 80110859 80111140 + 0 NA Intergenic Intergenic 6062 ENSMUSG00000088276.1 ENSMUSG00000088276 ENSMUST00000157651 Gm23125 snRNA Interval_31650 chr11 101984140 101986302 + 0 NA promoter-TSS (ENSMUSG00000003518.13) protein_coding-promoter-TSS (ENSMUSG00000003518.13) -470 ENSMUSG00000003518.13 ENSMUSG00000003518 ENSMUST00000176261 Dusp3 protein_coding Interval_37314 chr12 65075403 65076052 + 0 NA exon (ENSMUSG00000055884.8, exon 1 of 23) protein_coding-exon (ENSMUSG00000055884.8, exon 1 of 23) 120 ENSMUSG00000055884.8 ENSMUSG00000055884 ENSMUST00000221175 Fancm protein_coding Interval_43081 chr13 23715596 23715900 + 0 NA Intergenic Intergenic -10060 ENSMUSG00000006611.15 ENSMUSG00000006611 ENSMUST00000006787 Hfe protein_coding Interval_12076 chr1 189568935 189569374 + 0 NA Intergenic Intergenic 71080 ENSMUSG00000103087.1 ENSMUSG00000103087 ENSMUST00000192679 Gm38122 TEC Interval_72982 chr17 33950584 33952429 + 0 NA promoter-TSS (ENSMUSG00000067370.4) protein_coding-promoter-TSS (ENSMUSG00000067370.4) -18 ENSMUSG00000067370.4 ENSMUSG00000067370 ENSMUST00000087543 B3galt4 protein_coding Interval_13327 chr10 15035297 15035530 + 0 NA Intergenic Intergenic 50743 ENSMUSG00000088730.1 ENSMUSG00000088730 ENSMUST00000158105 Gm23892 snoRNA Interval_140446 chr6 118173132 118173743 + 0 NA exon (ENSMUSG00000030110.13, exon 11 of 20) protein_coding-exon (ENSMUSG00000030110.13, exon 11 of 20) 24281 ENSMUSG00000030110.13 ENSMUSG00000030110 ENSMUST00000088790 Ret protein_coding Interval_87520 chr19 53216390 53217660 + 0 NA TTS (ENSMUSG00000025026.15) protein_coding-TTS (ENSMUSG00000025026.15) 38165 ENSMUSG00000118314.1 ENSMUSG00000118314 ENSMUST00000237379 1700001K23Rik lincRNA Interval_13442 chr10 18317979 18319937 + 0 NA promoter-TSS (ENSMUSG00000039835.16) protein_coding-promoter-TSS (ENSMUSG00000039835.16) -27 ENSMUSG00000039835.16 ENSMUSG00000039835 ENSMUST00000100054 Nhsl1 protein_coding Interval_161313 chr8 119678107 119679417 + 0 NA intron (ENSMUSG00000023336.6, intron 1 of 4) protein_coding-intron (ENSMUSG00000023336.6, intron 1 of 6) -7881 ENSMUSG00000110453.1 ENSMUSG00000110453 ENSMUST00000212465 Gm32352 antisense Interval_69987 chr17 4024296 4024576 + 0 NA Intergenic Intergenic 58559 ENSMUSG00000116975.1 ENSMUSG00000116975 ENSMUST00000231647 4930470H14Rik lincRNA Interval_160851 chr8 113785716 113785973 + 0 NA intron (ENSMUSG00000053399.9, intron 3 of 9) protein_coding-intron (ENSMUSG00000053399.9, intron 3 of 22) 59460 ENSMUSG00000053399.9 ENSMUSG00000053399 ENSMUST00000212527 Adamts18 protein_coding Interval_58952 chr15 40670406 40670896 + 0 NA intron (ENSMUSG00000022306.9, intron 1 of 7) protein_coding-intron (ENSMUSG00000022306.9, intron 1 of 7) 15300 ENSMUSG00000022306.9 ENSMUSG00000022306 ENSMUST00000230319 Zfpm2 protein_coding Interval_96587 chr2 125973249 125973659 + 0 NA intron (ENSMUSG00000027207.15, intron 8 of 9) protein_coding-intron (ENSMUSG00000027207.15, intron 8 of 9) -61204 ENSMUSG00000027208.14 ENSMUSG00000027208 ENSMUST00000110442 Fgf7 protein_coding Interval_6061 chr1 95498708 95500966 + 0 NA TTS (ENSMUSG00000081051.4) processed_pseudogene-TTS (ENSMUSG00000081051.4) 1216 ENSMUSG00000081051.4 ENSMUSG00000081051 ENSMUST00000117288 Gm15427 processed_pseudogene Interval_67487 chr16 49803735 49804671 + 0 NA exon (ENSMUSG00000055447.19, exon 3 of 13) protein_coding-exon (ENSMUSG00000055447.19, exon 3 of 13) -5333 ENSMUSG00000087066.1 ENSMUSG00000087066 ENSMUST00000127115 Gm15518 antisense Interval_150393 chr7 110116175 110117372 + 0 NA intron (ENSMUSG00000101585.6, intron 2 of 3) antisense-intron (ENSMUSG00000101585.6, intron 2 of 3) -3217 ENSMUSG00000109904.1 ENSMUSG00000109904 ENSMUST00000210940 Gm45819 TEC Interval_15378 chr10 45193449 45194965 + 0 NA intron (ENSMUSG00000019848.14, intron 1 of 2) protein_coding-intron (ENSMUSG00000019848.14, intron 1 of 2) 16109 ENSMUSG00000019848.14 ENSMUSG00000019848 ENSMUST00000161803 Popdc3 protein_coding Interval_81317 chr18 57877778 57879626 + 0 NA promoter-TSS (ENSMUSG00000024597.11) protein_coding-promoter-TSS (ENSMUSG00000024597.11) -48503 ENSMUSG00000024597.11 ENSMUSG00000024597 ENSMUST00000236673 Slc12a2 protein_coding Interval_75411 chr17 66418967 66420012 + 0 NA intron (ENSMUSG00000052105.17, intron 3 of 15) protein_coding-intron (ENSMUSG00000052105.17, intron 3 of 13) -5505 ENSMUSG00000093686.1 ENSMUSG00000093686 ENSMUST00000177415 Gm4705 processed_pseudogene Interval_66645 chr16 35833997 35834256 + 0 NA exon (ENSMUSG00000034422.14, exon 17 of 17) protein_coding-exon (ENSMUSG00000034422.14, exon 17 of 17) -1865 ENSMUSG00000116549.1 ENSMUSG00000116549 ENSMUST00000231601 Gm49728 processed_pseudogene Interval_45174 chr13 52938321 52938623 + 0 NA Intergenic Intergenic -25526 ENSMUSG00000021460.17 ENSMUSG00000021460 ENSMUST00000151469 Auh protein_coding Interval_140750 chr6 121051856 121052726 + 0 NA intron (ENSMUSG00000051586.17, intron 1 of 14) protein_coding-intron (ENSMUSG00000051586.17, intron 1 of 17) -12305 ENSMUSG00000097011.2 ENSMUSG00000097011 ENSMUST00000203697 Gm4651 processed_transcript Interval_155979 chr8 41404586 41405986 + 0 NA intron (ENSMUSG00000031590.8, intron 5 of 8) protein_coding-intron (ENSMUSG00000031590.8, intron 5 of 8) 7636 ENSMUSG00000031590.8 ENSMUSG00000031590 ENSMUST00000210873 Frg1 protein_coding Interval_127900 chr5 108726821 108727534 + 0 NA Intergenic Intergenic 22103 ENSMUSG00000008090.14 ENSMUSG00000008090 ENSMUST00000199802 Fgfrl1 protein_coding Interval_53238 chr14 55499177 55499446 + 0 NA intron (ENSMUSG00000022211.9, intron 25 of 39) protein_coding-intron (ENSMUSG00000022211.9, intron 24 of 39) 8660 ENSMUSG00000022211.9 ENSMUSG00000022211 ENSMUST00000226653 Carmil3 protein_coding Interval_132193 chr5 143265343 143265575 + 0 NA promoter-TSS (ENSMUSG00000046658.16) protein_coding-promoter-TSS (ENSMUSG00000046658.16) -4616 ENSMUSG00000105345.1 ENSMUSG00000105345 ENSMUST00000199606 BC030343 lincRNA Interval_91834 chr2 50019956 50021001 + 0 NA Intergenic Intergenic -107891 ENSMUSG00000050447.15 ENSMUSG00000050447 ENSMUST00000126337 Lypd6 protein_coding Interval_93989 chr2 80526947 80527522 + 0 NA intron (ENSMUSG00000027002.13, intron 18 of 31) protein_coding-intron (ENSMUSG00000027002.13, intron 17 of 30) -1554 ENSMUSG00000027002.13 ENSMUSG00000027002 ENSMUST00000134587 Nckap1 protein_coding Interval_161355 chr8 119923926 119924170 + 0 NA intron (ENSMUSG00000092329.1, intron 1 of 15) protein_coding-intron (ENSMUSG00000031826.20, intron 1 of 6) 13207 ENSMUSG00000092329.1 ENSMUSG00000092329 ENSMUST00000127664 Galnt2l protein_coding Interval_149194 chr7 96177376 96178206 + 0 NA intron (ENSMUSG00000048078.16, intron 1 of 32) protein_coding-intron (ENSMUSG00000048078.16, intron 1 of 32) 25745 ENSMUSG00000108528.1 ENSMUSG00000108528 ENSMUST00000205708 Gm8319 processed_pseudogene Interval_29473 chr11 84219905 84220137 + 0 NA intron (ENSMUSG00000020532.18, intron 4 of 8) protein_coding-intron (ENSMUSG00000020532.18, intron 3 of 53) 30428 ENSMUSG00000103122.1 ENSMUSG00000103122 ENSMUST00000194891 Gm37391 TEC Interval_61908 chr15 85111882 85112114 + 0 NA intron (ENSMUSG00000022432.7, intron 10 of 24) protein_coding-intron (ENSMUSG00000022432.7, intron 10 of 24) -4872 ENSMUSG00000078289.2 ENSMUSG00000078289 ENSMUST00000105085 Gm10923 processed_pseudogene Interval_2008 chr1 35866440 35866884 + 0 NA Intergenic Intergenic -13183 ENSMUSG00000102531.1 ENSMUSG00000102531 ENSMUST00000194261 1110002O04Rik lincRNA Interval_48445 chr13 99076943 99078058 + 0 NA intron (ENSMUSG00000100410.1, intron 5 of 5) lincRNA-intron (ENSMUSG00000100410.1, intron 5 of 5) 10421 ENSMUSG00000100410.1 ENSMUSG00000100410 ENSMUST00000189489 2310020H05Rik lincRNA Interval_72308 chr17 29080788 29082199 + 0 NA Intergenic Intergenic -9151 ENSMUSG00000085912.2 ENSMUSG00000085912 ENSMUST00000233713 Trp53cor1 lincRNA Interval_135709 chr6 44061071 44061362 + 0 NA Intergenic Intergenic 22139 ENSMUSG00000107598.1 ENSMUSG00000107598 ENSMUST00000203777 Gm35216 lincRNA Interval_60291 chr15 72511817 72512228 + 0 NA exon (ENSMUSG00000036760.7, exon 2 of 2) protein_coding-exon (ENSMUSG00000036760.7, exon 2 of 2) -21003 ENSMUSG00000095149.1 ENSMUSG00000095149 ENSMUST00000179578 Gm24390 snRNA Interval_130313 chr5 125588222 125590038 + 0 NA intron (ENSMUSG00000070498.3, intron 1 of 8) protein_coding-intron (ENSMUSG00000070498.3, intron 1 of 8) 57356 ENSMUSG00000070498.3 ENSMUSG00000070498 ENSMUST00000184422 Tmem132b protein_coding Interval_26950 chr11 61781849 61783705 + 0 NA intron (ENSMUSG00000004798.14, intron 21 of 24) protein_coding-intron (ENSMUSG00000004798.14, intron 23 of 26) -20689 ENSMUSG00000020528.14 ENSMUSG00000020528 ENSMUST00000123575 Prpsap2 protein_coding Interval_151692 chr7 126080965 126082928 + 0 NA exon (ENSMUSG00000046182.8, exon 1 of 7) protein_coding-exon (ENSMUSG00000046182.8, exon 1 of 7) 465 ENSMUSG00000046182.8 ENSMUSG00000046182 ENSMUST00000073935 Gsg1l protein_coding Interval_87237 chr19 47127058 47127754 + 0 NA exon (ENSMUSG00000025047.9, exon 1 of 1) protein_coding-exon (ENSMUSG00000025047.9, exon 1 of 1) -1252 ENSMUSG00000025047.9 ENSMUSG00000025047 ENSMUST00000236656 Pdcd11 protein_coding Interval_50257 chr14 11492344 11492650 + 0 NA promoter-TSS (ENSMUSG00000114850.1) processed_pseudogene-promoter-TSS (ENSMUSG00000114850.1) -839 ENSMUSG00000114850.1 ENSMUSG00000114850 ENSMUST00000224598 Gm8438 processed_pseudogene Interval_80718 chr18 46564915 46565128 + 0 NA intron (ENSMUSG00000033184.14, intron 3 of 3) protein_coding-intron (ENSMUSG00000033184.14, intron 3 of 3) 9512 ENSMUSG00000056130.10 ENSMUSG00000056130 ENSMUST00000149929 Ticam2 protein_coding Interval_40199 chr12 102504163 102505811 + 0 NA Intergenic Intergenic 20530 ENSMUSG00000021192.16 ENSMUSG00000021192 ENSMUST00000222744 Golga5 protein_coding Interval_9051 chr1 153294553 153296104 + 0 NA intron (ENSMUSG00000026478.14, intron 1 of 27) protein_coding-intron (ENSMUSG00000026478.14, intron 1 of 27) -8138 ENSMUSG00000103818.1 ENSMUSG00000103818 ENSMUST00000194884 Gm38009 TEC Interval_162747 chr9 8396215 8396450 + 0 NA Intergenic Intergenic -79941 ENSMUSG00000110828.1 ENSMUSG00000110828 ENSMUST00000216605 Gm47517 processed_pseudogene Interval_12057 chr1 189227262 189227777 + 0 NA intron (ENSMUSG00000037624.15, intron 6 of 6) protein_coding-intron (ENSMUSG00000037624.15, intron 6 of 6) -16506 ENSMUSG00000103669.1 ENSMUSG00000103669 ENSMUST00000194444 2900042K21Rik sense_overlapping Interval_18139 chr10 82915452 82915892 + 0 NA Intergenic Intergenic -38672 ENSMUSG00000071151.3 ENSMUSG00000071151 ENSMUST00000095396 Gm4799 processed_pseudogene Interval_73764 chr17 43392112 43392484 + 0 NA intron (ENSMUSG00000056492.6, intron 1 of 3) protein_coding-intron (ENSMUSG00000056492.6, intron 1 of 20) 31847 ENSMUSG00000056492.6 ENSMUSG00000056492 ENSMUST00000225004 Adgrf5 protein_coding Interval_173958 chrX 116672958 116673162 + 0 NA Intergenic Intergenic -8118 ENSMUSG00000082482.2 ENSMUSG00000082482 ENSMUST00000118616 H2ab2 protein_coding Interval_29175 chr11 81053332 81053542 + 0 NA intron (ENSMUSG00000020704.13, intron 1 of 9) protein_coding-intron (ENSMUSG00000020704.13, intron 1 of 9) 6643 ENSMUSG00000082027.1 ENSMUSG00000082027 ENSMUST00000119111 Gm11416 processed_pseudogene Interval_134124 chr6 21010975 21011624 + 0 NA Intergenic Intergenic 1943 ENSMUSG00000087831.1 ENSMUSG00000087831 ENSMUST00000157206 Gm23960 snoRNA Interval_24442 chr11 33284341 33284734 + 0 NA intron (ENSMUSG00000040594.19, intron 21 of 27) protein_coding-intron (ENSMUSG00000040594.19, intron 21 of 27) -7800 ENSMUSG00000098456.1 ENSMUSG00000098456 ENSMUST00000183831 Gm12117 protein_coding Interval_122959 chr5 27841478 27842953 + 0 NA promoter-TSS (ENSMUSG00000039106.6) protein_coding-promoter-TSS (ENSMUSG00000039106.6) 66 ENSMUSG00000039106.6 ENSMUSG00000039106 ENSMUST00000036227 Htr5a protein_coding Interval_36661 chr12 51828698 51830258 + 0 NA promoter-TSS (ENSMUSG00000035247.16) protein_coding-promoter-TSS (ENSMUSG00000035247.16) 11143 ENSMUSG00000112746.1 ENSMUSG00000112746 ENSMUST00000218295 Gm19309 processed_pseudogene Interval_37848 chr12 72515413 72515708 + 0 NA intron (ENSMUSG00000021090.16, intron 7 of 7) protein_coding-intron (ENSMUSG00000021090.16, intron 7 of 7) -20823 ENSMUSG00000034501.7 ENSMUSG00000034501 ENSMUST00000044352 Pcnx4 protein_coding Interval_157855 chr8 74993353 74994784 + 0 NA intron (ENSMUSG00000034518.14, intron 1 of 3) protein_coding-intron (ENSMUSG00000034518.14, intron 1 of 10) -5801 ENSMUSG00000034518.14 ENSMUSG00000034518 ENSMUST00000129391 Hmgxb4 protein_coding Interval_105439 chr3 86382561 86382978 + 0 NA intron (ENSMUSG00000028080.16, intron 33 of 38) protein_coding-intron (ENSMUSG00000028080.16, intron 34 of 56) -1478 ENSMUSG00000064867.1 ENSMUSG00000064867 ENSMUST00000082933 Gm25039 snRNA Interval_45022 chr13 51566800 51567811 + 0 NA promoter-TSS (ENSMUSG00000021448.8) protein_coding-promoter-TSS (ENSMUSG00000021448.8) 2182 ENSMUSG00000021448.8 ENSMUSG00000021448 ENSMUST00000221850 Shc3 protein_coding Interval_138251 chr6 86611976 86612660 + 0 NA Intergenic Intergenic -15846 ENSMUSG00000033508.7 ENSMUSG00000033508 ENSMUST00000043400 Asprv1 protein_coding Interval_160312 chr8 108087069 108087586 + 0 NA intron (ENSMUSG00000038872.10, intron 2 of 4) protein_coding-intron (ENSMUSG00000038872.10, intron 1 of 15) 92768 ENSMUSG00000038872.10 ENSMUSG00000038872 ENSMUST00000043896 Zfhx3 protein_coding Interval_25513 chr11 49399535 49399854 + 0 NA Intergenic Intergenic -4926 ENSMUSG00000084278.1 ENSMUSG00000084278 ENSMUST00000119779 Gm12189 processed_pseudogene Interval_107274 chr3 105164093 105164681 + 0 NA Intergenic Intergenic 97543 ENSMUSG00000051788.4 ENSMUSG00000051788 ENSMUST00000070584 4930564D02Rik protein_coding Interval_148308 chr7 80419064 80420102 + 0 NA Intergenic Intergenic -9627 ENSMUSG00000081664.1 ENSMUSG00000081664 ENSMUST00000118776 Gm15544 processed_pseudogene Interval_63057 chr15 98871043 98872587 + 0 NA promoter-TSS (ENSMUSG00000048154.17) protein_coding-promoter-TSS (ENSMUSG00000048154.17) 798 ENSMUSG00000115980.1 ENSMUSG00000115980 ENSMUST00000230986 Gm49437 TEC Interval_81060 chr18 53410714 53412212 + 0 NA intron (ENSMUSG00000024538.8, intron 2 of 4) protein_coding-intron (ENSMUSG00000024538.8, intron 2 of 4) 6652 ENSMUSG00000024538.8 ENSMUSG00000024538 ENSMUST00000025419 Ppic protein_coding Interval_86938 chr19 45100864 45101247 + 0 NA intron (ENSMUSG00000117848.1, intron 3 of 4) lincRNA-intron (ENSMUSG00000117848.1, intron 3 of 4) 14004 ENSMUSG00000117848.1 ENSMUSG00000117848 ENSMUST00000237139 Gm35867 lincRNA Interval_53435 chr14 57423455 57424411 + 0 NA promoter-TSS (ENSMUSG00000040040.16) protein_coding-promoter-TSS (ENSMUSG00000040040.16) 12580 ENSMUSG00000081238.3 ENSMUSG00000081238 ENSMUST00000119952 Gm15836 processed_pseudogene Interval_158696 chr8 85364691 85364969 + 0 NA exon (ENSMUSG00000031698.14, exon 1 of 13) protein_coding-exon (ENSMUSG00000031698.14, exon 1 of 13) 16204 ENSMUSG00000031698.14 ENSMUSG00000031698 ENSMUST00000138825 Mylk3 protein_coding Interval_66587 chr16 35423704 35423917 + 0 NA intron (ENSMUSG00000022844.8, intron 10 of 16) protein_coding-intron (ENSMUSG00000022844.8, intron 10 of 16) -10635 ENSMUSG00000022844.8 ENSMUSG00000022844 ENSMUST00000231595 Pdia5 protein_coding Interval_66657 chr16 35894696 35895405 + 0 NA Intergenic Intergenic 3636 ENSMUSG00000116728.1 ENSMUSG00000116728 ENSMUST00000232076 Gm41467 processed_pseudogene Interval_101668 chr3 8766138 8768224 + 0 NA Intergenic Intergenic -20357 ENSMUSG00000103256.1 ENSMUSG00000103256 ENSMUST00000194556 Gm37647 TEC Interval_105659 chr3 88436481 88437187 + 0 NA exon (ENSMUSG00000028064.17, exon 15 of 15) protein_coding-exon (ENSMUSG00000028064.17, exon 15 of 15) 4117 ENSMUSG00000098655.1 ENSMUSG00000098655 ENSMUST00000183768 Mir7011 miRNA Interval_25949 chr11 53031687 53032895 + 0 NA intron (ENSMUSG00000036264.9, intron 4 of 15) protein_coding-intron (ENSMUSG00000036264.9, intron 4 of 15) 87765 ENSMUSG00000087668.1 ENSMUSG00000087668 ENSMUST00000137096 Gm11186 antisense Interval_146257 chr7 45007367 45008480 + 0 NA exon (ENSMUSG00000038406.17, exon 7 of 11) protein_coding-exon (ENSMUSG00000038406.17, exon 7 of 11) 4564 ENSMUSG00000098839.1 ENSMUSG00000098839 ENSMUST00000183606 Mir7054 miRNA Interval_23935 chr11 28561130 28561413 + 0 NA intron (ENSMUSG00000032878.16, intron 2 of 5) protein_coding-intron (ENSMUSG00000032878.16, intron 2 of 3) -120293 ENSMUSG00000084966.1 ENSMUSG00000084966 ENSMUST00000146554 2810471M01Rik lincRNA Interval_160040 chr8 105971097 105971978 + 0 NA Intergenic Intergenic -5463 ENSMUSG00000017765.17 ENSMUSG00000017765 ENSMUST00000143381 Slc12a4 protein_coding Interval_124029 chr5 37395236 37395950 + 0 NA intron (ENSMUSG00000050248.11, intron 14 of 19) protein_coding-intron (ENSMUSG00000050248.11, intron 14 of 19) 5689 ENSMUSG00000050248.11 ENSMUSG00000050248 ENSMUST00000159854 Evc2 protein_coding Interval_142046 chr6 136727612 136728151 + 0 NA exon (ENSMUSG00000042638.14, exon 15 of 27) protein_coding-exon (ENSMUSG00000042638.14, exon 15 of 27) -32598 ENSMUSG00000107850.1 ENSMUSG00000107850 ENSMUST00000203395 Gm4714 processed_pseudogene Interval_105048 chr3 80237407 80238480 + 0 NA Intergenic Intergenic -32345 ENSMUSG00000103929.1 ENSMUSG00000103929 ENSMUST00000192018 Gm37892 antisense Interval_69062 chr16 90381803 90382055 + 0 NA Intergenic Intergenic -18615 ENSMUSG00000053414.8 ENSMUSG00000053414 ENSMUST00000231603 Hunk protein_coding Interval_134370 chr6 26986127 26986436 + 0 NA Intergenic Intergenic 155864 ENSMUSG00000106742.1 ENSMUSG00000106742 ENSMUST00000201073 Gm42474 processed_pseudogene Interval_145757 chr7 38084576 38086290 + 0 NA Intergenic Intergenic 13936 ENSMUSG00000002068.16 ENSMUSG00000002068 ENSMUST00000124979 Ccne1 protein_coding Interval_39792 chr12 98350092 98350387 + 0 NA Intergenic Intergenic -70578 ENSMUSG00000112510.1 ENSMUSG00000112510 ENSMUST00000218404 Gm47566 antisense Interval_162874 chr9 11033245 11033441 + 0 NA Intergenic Intergenic 18893 ENSMUSG00000111568.1 ENSMUSG00000111568 ENSMUST00000215082 Gm18488 processed_pseudogene Interval_95793 chr2 116390553 116390819 + 0 NA Intergenic Intergenic 137804 ENSMUSG00000081787.1 ENSMUSG00000081787 ENSMUST00000120190 Gm13991 processed_pseudogene Interval_154415 chr8 15927634 15927865 + 0 NA intron (ENSMUSG00000060924.15, intron 7 of 20) protein_coding-intron (ENSMUSG00000060924.15, intron 55 of 69) 50085 ENSMUSG00000109757.1 ENSMUSG00000109757 ENSMUST00000211639 Gm7128 processed_pseudogene Interval_66632 chr16 35762318 35764180 + 0 NA intron (ENSMUSG00000022848.8, intron 1 of 8) protein_coding-intron (ENSMUSG00000022848.8, intron 1 of 8) 6081 ENSMUSG00000022848.8 ENSMUSG00000022848 ENSMUST00000149892 Slc49a4 protein_coding Interval_123615 chr5 33825708 33826737 + 0 NA intron (ENSMUSG00000057406.16, intron 2 of 9) protein_coding-intron (ENSMUSG00000057406.16, intron 2 of 22) -43508 ENSMUSG00000005299.6 ENSMUSG00000005299 ENSMUST00000148451 Letm1 protein_coding Interval_156432 chr8 48129280 48129471 + 0 NA intron (ENSMUSG00000031562.15, intron 3 of 3) protein_coding-intron (ENSMUSG00000031562.15, intron 3 of 5) 19213 ENSMUSG00000031562.15 ENSMUSG00000031562 ENSMUST00000174379 Dctd protein_coding Interval_108283 chr3 123293907 123297074 + 0 NA intron (ENSMUSG00000039234.11, intron 3 of 19) protein_coding-intron (ENSMUSG00000039234.11, intron 6 of 22) 28000 ENSMUSG00000039234.11 ENSMUSG00000039234 ENSMUST00000196482 Sec24d protein_coding Interval_105143 chr3 82441167 82442187 + 0 NA Intergenic Intergenic 61604 ENSMUSG00000033900.13 ENSMUSG00000033900 ENSMUST00000195793 Map9 protein_coding Interval_166343 chr9 58457677 58458548 + 0 NA intron (ENSMUSG00000097651.2, intron 1 of 2) lincRNA-intron (ENSMUSG00000097651.2, intron 1 of 2) 2990 ENSMUSG00000097651.2 ENSMUSG00000097651 ENSMUST00000181967 4930461G14Rik lincRNA Interval_131023 chr5 134616916 134617464 + 0 NA Intergenic Intergenic -13270 ENSMUSG00000040751.12 ENSMUSG00000040751 ENSMUST00000201832 Lat2 protein_coding Interval_130669 chr5 129620284 129621209 + 0 NA Intergenic Intergenic 3125 ENSMUSG00000057244.6 ENSMUSG00000057244 ENSMUST00000079261 Gm6139 processed_pseudogene Interval_112924 chr4 46114415 46114725 + 0 NA TTS (ENSMUSG00000035495.15) protein_coding-TTS (ENSMUSG00000035495.15) -3610 ENSMUSG00000088069.1 ENSMUSG00000088069 ENSMUST00000157444 Gm23250 misc_RNA Interval_60824 chr15 76976627 76976946 + 0 NA Intergenic Intergenic -11238 ENSMUSG00000116339.1 ENSMUSG00000116339 ENSMUST00000230431 Gm35933 lincRNA Interval_145013 chr7 29419775 29420586 + 0 NA intron (ENSMUSG00000030583.16, intron 3 of 22) protein_coding-intron (ENSMUSG00000030583.16, intron 3 of 22) -42575 ENSMUSG00000030583.16 ENSMUSG00000030583 ENSMUST00000183085 Sipa1l3 protein_coding Interval_95184 chr2 104597468 104597866 + 0 NA intron (ENSMUSG00000027176.8, intron 1 of 1) protein_coding-intron (ENSMUSG00000027176.8, intron 1 of 20) 7049 ENSMUSG00000027176.8 ENSMUSG00000027176 ENSMUST00000126539 Cstf3 protein_coding Interval_32909 chr11 113032335 113033516 + 0 NA Intergenic Intergenic 140152 ENSMUSG00000087259.7 ENSMUSG00000087259 ENSMUST00000150712 2610035D17Rik lincRNA Interval_45244 chr13 53460839 53462743 + 0 NA Intergenic Intergenic 11283 ENSMUSG00000021469.9 ENSMUSG00000021469 ENSMUST00000188606 Msx2 protein_coding Interval_121550 chr5 3368385 3370267 + 0 NA intron (ENSMUSG00000040274.11, intron 1 of 1) protein_coding-intron (ENSMUSG00000040274.11, intron 1 of 6) 99007 ENSMUSG00000106658.1 ENSMUSG00000106658 ENSMUST00000197473 Gm36548 lincRNA Interval_29829 chr11 87135845 87136601 + 0 NA intron (ENSMUSG00000018548.15, intron 2 of 6) protein_coding-intron (ENSMUSG00000018548.15, intron 2 of 23) -9265 ENSMUSG00000085310.7 ENSMUSG00000085310 ENSMUST00000155828 Gm11491 antisense Interval_131819 chr5 140085623 140086570 + 0 NA TTS (ENSMUSG00000085673.1) antisense-TTS (ENSMUSG00000085673.1) 11991 ENSMUSG00000085673.1 ENSMUSG00000085673 ENSMUST00000142625 Gm16122 antisense Interval_156791 chr8 60035561 60035824 + 0 NA Intergenic Intergenic -43898 ENSMUSG00000065727.1 ENSMUSG00000065727 ENSMUST00000083793 Gm26164 snRNA Interval_106059 chr3 92106501 92107282 + 0 NA intron (ENSMUSG00000104791.1, intron 2 of 5) sense_overlapping-intron (ENSMUSG00000104791.1, intron 2 of 5) -6301 ENSMUSG00000106143.1 ENSMUSG00000106143 ENSMUST00000198245 Gm43735 antisense Interval_187 JH792828.1 253560 253856 + 0 NA NA NA NA NA Interval_122320 chr5 21269223 21270145 + 0 NA intron (ENSMUSG00000039934.12, intron 18 of 26) protein_coding-intron (ENSMUSG00000039934.12, intron 19 of 30) 9937 ENSMUSG00000105275.1 ENSMUSG00000105275 ENSMUST00000199242 Gm43214 processed_pseudogene Interval_56181 chr14 111215786 111216075 + 0 NA Intergenic Intergenic -66116 ENSMUSG00000093362.1 ENSMUSG00000093362 ENSMUST00000175621 Gm22802 miRNA Interval_46461 chr13 66338090 66338659 + 0 NA intron (ENSMUSG00000114616.1, intron 2 of 2) lincRNA-intron (ENSMUSG00000114616.1, intron 2 of 2) -3495 ENSMUSG00000114328.1 ENSMUSG00000114328 ENSMUST00000224794 Gm48246 processed_pseudogene Interval_173852 chrX 105965261 105965749 + 0 NA Intergenic Intergenic 46394 ENSMUSG00000031232.17 ENSMUSG00000031232 ENSMUST00000139421 Magt1 protein_coding Interval_136735 chr6 58770571 58772101 + 0 NA Intergenic Intergenic 10601 ENSMUSG00000108164.1 ENSMUSG00000108164 ENSMUST00000203675 Gm43899 processed_pseudogene Interval_60121 chr15 65895510 65896995 + 0 NA intron (ENSMUSG00000015001.17, intron 3 of 11) protein_coding-intron (ENSMUSG00000015001.17, intron 5 of 14) 5309 ENSMUSG00000015001.17 ENSMUSG00000015001 ENSMUST00000147776 Oc90 protein_coding Interval_71213 chr17 21210875 21211140 + 0 NA Intergenic Intergenic 12055 ENSMUSG00000095963.1 ENSMUSG00000095963 ENSMUST00000167648 Gm7742 processed_pseudogene Interval_130416 chr5 127469883 127470958 + 0 NA intron (ENSMUSG00000034324.16, intron 3 of 8) protein_coding-intron (ENSMUSG00000034324.16, intron 3 of 8) -82834 ENSMUSG00000034324.16 ENSMUSG00000034324 ENSMUST00000145748 Tmem132c protein_coding Interval_103986 chr3 56209286 56210180 + 0 NA Intergenic Intergenic -42164 ENSMUSG00000105293.1 ENSMUSG00000105293 ENSMUST00000196328 Gm42843 TEC Interval_42488 chr13 14048998 14050968 + 0 NA TTS (ENSMUSG00000021302.10) protein_coding-TTS (ENSMUSG00000021302.10) 4206 ENSMUSG00000021302.10 ENSMUSG00000021302 ENSMUST00000221406 Ggps1 protein_coding Interval_137836 chr6 82846539 82847145 + 0 NA Intergenic Intergenic 15408 ENSMUSG00000108015.3 ENSMUSG00000108015 ENSMUST00000203038 Gm32591 lincRNA Interval_51051 chr14 21812085 21813365 + 0 NA promoter-TSS (ENSMUSG00000065836.1) snRNA-promoter-TSS (ENSMUSG00000065836.1) 14 ENSMUSG00000065836.1 ENSMUSG00000065836 ENSMUST00000083902 Gm23502 snRNA Interval_66618 chr16 35690225 35691242 + 0 NA Intergenic Intergenic 31500 ENSMUSG00000087793.1 ENSMUSG00000087793 ENSMUST00000157168 Gm25967 snoRNA Interval_109001 chr3 134497916 134498599 + 0 NA intron (ENSMUSG00000097031.2, intron 2 of 2) lincRNA-intron (ENSMUSG00000097031.2, intron 2 of 2) -74622 ENSMUSG00000105765.1 ENSMUSG00000105765 ENSMUST00000198231 4930539C22Rik lincRNA Interval_10140 chr1 166043462 166043974 + 0 NA promoter-TSS (ENSMUSG00000102890.1) processed_pseudogene-promoter-TSS (ENSMUSG00000102890.1) -27 ENSMUSG00000102890.1 ENSMUSG00000102890 ENSMUST00000195801 Gm7626 processed_pseudogene Interval_30267 chr11 92462773 92462946 + 0 NA Intergenic Intergenic 308114 ENSMUSG00000081363.2 ENSMUSG00000081363 ENSMUST00000118237 Gm11500 processed_pseudogene Interval_161774 chr8 122697381 122697997 + 0 NA promoter-TSS (ENSMUSG00000090174.1) antisense-promoter-TSS (ENSMUSG00000090174.1) -171 ENSMUSG00000090174.1 ENSMUSG00000090174 ENSMUST00000162198 Gm10612 antisense Interval_114729 chr4 84523311 84524125 + 0 NA promoter-TSS (ENSMUSG00000028487.18) protein_coding-promoter-TSS (ENSMUSG00000028487.18) -94594 ENSMUSG00000083743.1 ENSMUSG00000083743 ENSMUST00000119071 Gm12421 processed_pseudogene Interval_157057 chr8 64849252 64850820 + 0 NA promoter-TSS (ENSMUSG00000031605.8) protein_coding-promoter-TSS (ENSMUSG00000031605.8) -112 ENSMUSG00000031605.8 ENSMUSG00000031605 ENSMUST00000209544 Klhl2 protein_coding Interval_104574 chr3 68434340 68434559 + 0 NA intron (ENSMUSG00000027777.15, intron 1 of 6) protein_coding-intron (ENSMUSG00000027777.15, intron 1 of 7) 26666 ENSMUSG00000103345.1 ENSMUSG00000103345 ENSMUST00000195366 Gm10723 TEC Interval_94234 chr2 85958521 85958748 + 0 NA Intergenic Intergenic 8197 ENSMUSG00000057207.2 ENSMUSG00000057207 ENSMUST00000080698 Olfr1028 protein_coding Interval_87053 chr19 45827245 45827987 + 0 NA intron (ENSMUSG00000039901.10, intron 24 of 25) protein_coding-intron (ENSMUSG00000039901.10, intron 24 of 25) -16001 ENSMUSG00000117956.1 ENSMUSG00000117956 ENSMUST00000235344 Gm50196 antisense Interval_12928 chr10 8257312 8258197 + 0 NA intron (ENSMUSG00000047712.8, intron 2 of 6) protein_coding-intron (ENSMUSG00000047712.8, intron 5 of 7) 44488 ENSMUSG00000047712.8 ENSMUSG00000047712 ENSMUST00000061601 Ust protein_coding Interval_90233 chr2 29177525 29178057 + 0 NA intron (ENSMUSG00000043535.13, intron 8 of 8) protein_coding-intron (ENSMUSG00000043535.13, intron 25 of 25) 51905 ENSMUSG00000043535.13 ENSMUSG00000043535 ENSMUST00000145422 Setx protein_coding Interval_151694 chr7 126092940 126093951 + 0 NA Intergenic Intergenic -11034 ENSMUSG00000046182.8 ENSMUSG00000046182 ENSMUST00000073935 Gsg1l protein_coding Interval_52272 chr14 41258817 41259510 + 0 NA Intergenic Intergenic 11477 ENSMUSG00000094710.1 ENSMUSG00000094710 ENSMUST00000179754 Gm22823 snRNA Interval_116957 chr4 118436741 118438365 + 0 NA promoter-TSS (ENSMUSG00000006398.15) protein_coding-promoter-TSS (ENSMUSG00000006398.15) -975 ENSMUSG00000006398.15 ENSMUSG00000006398 ENSMUST00000151302 Cdc20 protein_coding Interval_38378 chr12 78133342 78133743 + 0 NA Intergenic Intergenic -32004 ENSMUSG00000088039.1 ENSMUSG00000088039 ENSMUST00000157414 Gm24994 snoRNA Interval_90041 chr2 27475018 27476377 + 0 NA promoter-TSS (ENSMUSG00000026918.16) protein_coding-promoter-TSS (ENSMUSG00000026918.16) -11581 ENSMUSG00000026918.16 ENSMUSG00000026918 ENSMUST00000126059 Brd3 protein_coding Interval_30511 chr11 94853826 94854775 + 0 NA Intergenic Intergenic 7459 ENSMUSG00000043522.8 ENSMUSG00000043522 ENSMUST00000124176 A430060F13Rik unprocessed_pseudogene Interval_173471 chrX 94246171 94246488 + 0 NA intron (ENSMUSG00000043929.16, intron 2 of 3) protein_coding-intron (ENSMUSG00000043929.16, intron 3 of 3) 11018 ENSMUSG00000043929.16 ENSMUSG00000043929 ENSMUST00000113915 Klhl15 protein_coding Interval_103572 chr3 49951513 49951908 + 0 NA intron (ENSMUSG00000027737.10, intron 11 of 11) protein_coding-intron (ENSMUSG00000027737.10, intron 11 of 11) -50262 ENSMUSG00000102892.1 ENSMUSG00000102892 ENSMUST00000192149 Gm37854 antisense Interval_15322 chr10 44488928 44489569 + 0 NA intron (ENSMUSG00000038151.13, intron 1 of 3) protein_coding-intron (ENSMUSG00000038151.13, intron 1 of 3) -32038 ENSMUSG00000038151.13 ENSMUSG00000038151 ENSMUST00000167340 Prdm1 protein_coding Interval_92627 chr2 61667467 61668678 + 0 NA Intergenic Intergenic 24241 ENSMUSG00000064289.15 ENSMUSG00000064289 ENSMUST00000154693 Tank protein_coding Interval_28893 chr11 79107876 79108119 + 0 NA intron (ENSMUSG00000018334.18, intron 1 of 12) protein_coding-intron (ENSMUSG00000018334.18, intron 1 of 18) -48161 ENSMUSG00000018334.18 ENSMUSG00000018334 ENSMUST00000129463 Ksr1 protein_coding Interval_1685 chr1 31095873 31096117 + 0 NA intron (ENSMUSG00000086727.8, intron 3 of 5) protein_coding-intron (ENSMUSG00000086727.8, intron 3 of 5) 26867 ENSMUSG00000098529.1 ENSMUSG00000098529 ENSMUST00000184868 Gm27362 rRNA Interval_16592 chr10 64696938 64697191 + 0 NA intron (ENSMUSG00000060843.11, intron 13 of 17) protein_coding-intron (ENSMUSG00000060843.11, intron 12 of 16) -392320 ENSMUSG00000089003.1 ENSMUSG00000089003 ENSMUST00000158378 Gm23854 snRNA Interval_101693 chr3 8975025 8977641 + 0 NA intron (ENSMUSG00000027506.15, intron 1 of 3) protein_coding-intron (ENSMUSG00000027506.15, intron 1 of 6) 28145 ENSMUSG00000027506.15 ENSMUSG00000027506 ENSMUST00000155450 Tpd52 protein_coding Interval_65834 chr16 29664121 29664745 + 0 NA Intergenic Intergenic 77419 ENSMUSG00000038084.16 ENSMUSG00000038084 ENSMUST00000160101 Opa1 protein_coding Interval_69152 chr16 90990617 90991319 + 0 NA intron (ENSMUSG00000022973.18, intron 4 of 32) protein_coding-intron (ENSMUSG00000022973.18, intron 4 of 18) 7061 ENSMUSG00000085279.1 ENSMUSG00000085279 ENSMUST00000123318 Gm15965 antisense Interval_130125 chr5 124424444 124427184 + 0 NA promoter-TSS (ENSMUSG00000038095.15) protein_coding-promoter-TSS (ENSMUSG00000038095.15) 108 ENSMUSG00000103864.1 ENSMUSG00000103864 ENSMUST00000192373 Gm37415 TEC Interval_82227 chr18 69415744 69416364 + 0 NA exon (ENSMUSG00000053477.17, exon 1 of 18) protein_coding-exon (ENSMUSG00000053477.17, exon 1 of 18) -106396 ENSMUSG00000053477.17 ENSMUSG00000053477 ENSMUST00000136019 Tcf4 protein_coding Interval_64041 chr16 6042892 6043240 + 0 NA intron (ENSMUSG00000008658.16, intron 1 of 11) protein_coding-intron (ENSMUSG00000008658.16, intron 1 of 11) 67481 ENSMUSG00000101481.1 ENSMUSG00000101481 ENSMUST00000190515 1700123O21Rik sense_intronic Interval_134973 chr6 34242403 34243859 + 0 NA Intergenic Intergenic -47134 ENSMUSG00000086762.1 ENSMUSG00000086762 ENSMUST00000138275 Gm14546 antisense Interval_63045 chr15 98799426 98799641 + 0 NA Intergenic Intergenic 9676 ENSMUSG00000022997.9 ENSMUSG00000022997 ENSMUST00000023734 Wnt1 protein_coding Interval_107653 chr3 109488449 109488794 + 0 NA intron (ENSMUSG00000033721.16, intron 2 of 16) protein_coding-intron (ENSMUSG00000033721.16, intron 2 of 26) -158903 ENSMUSG00000033721.16 ENSMUSG00000033721 ENSMUST00000148866 Vav3 protein_coding Interval_7383 chr1 130741133 130741709 + 0 NA promoter-TSS (ENSMUSG00000099556.1) antisense-promoter-TSS (ENSMUSG00000099556.1) -94 ENSMUSG00000099556.1 ENSMUSG00000099556 ENSMUST00000188068 Gm28857 antisense Interval_137567 chr6 73299286 73299842 + 0 NA Intergenic Intergenic 11077 ENSMUSG00000107931.1 ENSMUSG00000107931 ENSMUST00000204041 Gm44475 processed_pseudogene Interval_27987 chr11 71986295 71986888 + 0 NA Intergenic Intergenic -36164 ENSMUSG00000080577.1 ENSMUSG00000080577 ENSMUST00000116927 Gm23226 snRNA Interval_1389 chr1 21253860 21254213 + 0 NA exon (ENSMUSG00000025934.15, exon 1 of 1) protein_coding-exon (ENSMUSG00000025934.15, exon 1 of 1) 515 ENSMUSG00000025934.15 ENSMUSG00000025934 ENSMUST00000190711 Gsta3 protein_coding Interval_142082 chr6 137006575 137007802 + 0 NA Intergenic Intergenic 20592 ENSMUSG00000107734.1 ENSMUSG00000107734 ENSMUST00000203175 Gm30055 TEC Interval_146048 chr7 43482720 43483641 + 0 NA intron (ENSMUSG00000013367.5, intron 1 of 7) protein_coding-intron (ENSMUSG00000013367.5, intron 1 of 7) -4947 ENSMUSG00000013367.5 ENSMUSG00000013367 ENSMUST00000206336 Iglon5 protein_coding Interval_55414 chr14 86970119 86970439 + 0 NA intron (ENSMUSG00000022021.14, intron 13 of 15) protein_coding-intron (ENSMUSG00000022021.14, intron 14 of 27) -49568 ENSMUSG00000077948.2 ENSMUSG00000077948 ENSMUST00000104755 Gm23438 miRNA Interval_127520 chr5 104809870 104810130 + 0 NA Intergenic Intergenic 34221 ENSMUSG00000048334.8 ENSMUSG00000048334 ENSMUST00000055593 Gm8258 processed_pseudogene Interval_156936 chr8 61941090 61941575 + 0 NA TTS (ENSMUSG00000037921.15) protein_coding-TTS (ENSMUSG00000037921.15) 13243 ENSMUSG00000037921.15 ENSMUSG00000037921 ENSMUST00000136121 Ddx60 protein_coding Interval_69649 chr16 94852982 94853174 + 0 NA intron (ENSMUSG00000043301.16, intron 2 of 2) protein_coding-intron (ENSMUSG00000043301.16, intron 2 of 4) 3594 ENSMUSG00000043301.16 ENSMUSG00000043301 ENSMUST00000231744 Kcnj6 protein_coding Interval_120367 chr4 148139842 148141127 + 0 NA promoter-TSS (ENSMUSG00000029003.11) protein_coding-promoter-TSS (ENSMUSG00000029003.11) -278 ENSMUSG00000029003.11 ENSMUSG00000029003 ENSMUST00000105708 Mad2l2 protein_coding Interval_111682 chr4 25778796 25779327 + 0 NA intron (ENSMUSG00000055373.8, intron 1 of 2) protein_coding-intron (ENSMUSG00000055373.8, intron 1 of 2) 20794 ENSMUSG00000055373.8 ENSMUSG00000055373 ENSMUST00000149875 Fut9 protein_coding Interval_99461 chr2 161393847 161394818 + 0 NA Intergenic Intergenic 63018 ENSMUSG00000087031.1 ENSMUSG00000087031 ENSMUST00000151260 Gm14241 lincRNA Interval_156489 chr8 48699429 48699759 + 0 NA intron (ENSMUSG00000031561.16, intron 1 of 2) protein_coding-intron (ENSMUSG00000031561.16, intron 1 of 2) -68425 ENSMUSG00000110509.1 ENSMUSG00000110509 ENSMUST00000212961 Gm45772 processed_pseudogene Interval_151774 chr7 126576621 126577596 + 0 NA intron (ENSMUSG00000030720.16, intron 1 of 5) protein_coding-intron (ENSMUSG00000030720.16, intron 9 of 14) 2424 ENSMUSG00000098540.1 ENSMUSG00000098540 ENSMUST00000184825 Mir7059 miRNA Interval_90546 chr2 31087408 31088511 + 0 NA intron (ENSMUSG00000075415.13, intron 4 of 6) protein_coding-intron (ENSMUSG00000075415.13, intron 4 of 13) 28353 ENSMUSG00000075415.13 ENSMUSG00000075415 ENSMUST00000136085 Fnbp1 protein_coding Interval_100444 chr2 169047872 169048275 + 0 NA Intergenic Intergenic -13047 ENSMUSG00000080415.1 ENSMUSG00000080415 ENSMUST00000116765 Gm26469 miRNA Interval_151056 chr7 118218566 118218817 + 0 NA intron (ENSMUSG00000030655.15, intron 1 of 9) protein_coding-intron (ENSMUSG00000030655.15, intron 1 of 62) 12666 ENSMUSG00000109045.1 ENSMUSG00000109045 ENSMUST00000207096 Gm45084 TEC Interval_88328 chr2 3815058 3816882 + 0 NA Intergenic Intergenic -39060 ENSMUSG00000085656.1 ENSMUSG00000085656 ENSMUST00000141222 Gm13180 lincRNA Interval_60485 chr15 74258837 74259037 + 0 NA Intergenic Intergenic -164604 ENSMUSG00000082585.3 ENSMUSG00000082585 ENSMUST00000120421 Gm15387 processed_pseudogene Interval_7962 chr1 134870089 134870439 + 0 NA intron (ENSMUSG00000073557.12, intron 13 of 19) protein_coding-intron (ENSMUSG00000073557.12, intron 12 of 23) 36122 ENSMUSG00000101168.1 ENSMUSG00000101168 ENSMUST00000188123 Gm28892 antisense Interval_127638 chr5 106023095 106023744 + 0 NA Intergenic Intergenic -42237 ENSMUSG00000105129.1 ENSMUSG00000105129 ENSMUST00000199576 Gm19566 processed_pseudogene Interval_74784 chr17 56515623 56516325 + 0 NA Intergenic Intergenic -3543 ENSMUSG00000044526.3 ENSMUSG00000044526 ENSMUST00000052211 Znrf4 protein_coding Interval_64551 chr16 13233422 13233647 + 0 NA Intergenic Intergenic 101143 ENSMUSG00000022545.13 ENSMUSG00000022545 ENSMUST00000156393 Ercc4 protein_coding Interval_36636 chr12 51678769 51679474 + 0 NA intron (ENSMUSG00000020954.16, intron 1 of 15) protein_coding-intron (ENSMUSG00000020954.16, intron 1 of 17) -11912 ENSMUSG00000020955.9 ENSMUSG00000020955 ENSMUST00000021338 Ap4s1 protein_coding Interval_19722 chr10 108298433 108299932 + 0 NA Intergenic Intergenic -33635 ENSMUSG00000035873.8 ENSMUSG00000035873 ENSMUST00000218332 Pawr protein_coding Interval_149993 chr7 104287315 104289436 + 0 NA promoter-TSS (ENSMUSG00000060441.15) protein_coding-promoter-TSS (ENSMUSG00000060441.15) -281 ENSMUSG00000060441.15 ENSMUSG00000060441 ENSMUST00000051795 Trim5 protein_coding Interval_121760 chr5 7179353 7179874 + 0 NA exon (ENSMUSG00000095159.2, exon 1 of 1) processed_pseudogene-exon (ENSMUSG00000095159.2, exon 1 of 1) 248 ENSMUSG00000095159.2 ENSMUSG00000095159 ENSMUST00000179460 Tubb4b-ps1 processed_pseudogene Interval_29614 chr11 85435727 85436130 + 0 NA intron (ENSMUSG00000059439.15, intron 7 of 26) protein_coding-intron (ENSMUSG00000059439.15, intron 7 of 24) -30231 ENSMUSG00000059439.15 ENSMUSG00000059439 ENSMUST00000140562 Bcas3 protein_coding Interval_67337 chr16 46513838 46514526 + 0 NA Intergenic Intergenic -17410 ENSMUSG00000022656.15 ENSMUSG00000022656 ENSMUST00000133935 Nectin3 protein_coding Interval_64928 chr16 17275624 17278495 + 0 NA promoter-TSS (ENSMUSG00000055692.21) protein_coding-promoter-TSS (ENSMUSG00000055692.21) -36 ENSMUSG00000055692.21 ENSMUSG00000055692 ENSMUST00000231334 Tmem191c protein_coding Interval_42413 chr13 13368149 13368345 + 0 NA promoter-TSS (ENSMUSG00000021306.11) protein_coding-promoter-TSS (ENSMUSG00000021306.11) 25317 ENSMUSG00000021306.11 ENSMUSG00000021306 ENSMUST00000221498 Gpr137b protein_coding Interval_68826 chr16 87418724 87419218 + 0 NA promoter-TSS (ENSMUSG00000065647.1) snoRNA-promoter-TSS (ENSMUSG00000065647.1) 73 ENSMUSG00000065647.1 ENSMUSG00000065647 ENSMUST00000083713 Gm25896 snoRNA Interval_35656 chr12 26778695 26779421 + 0 NA Intergenic Intergenic 55815 ENSMUSG00000113218.1 ENSMUSG00000113218 ENSMUST00000222026 4933409F18Rik lincRNA Interval_90655 chr2 31719154 31720970 + 0 NA intron (ENSMUSG00000026842.16, intron 2 of 11) protein_coding-intron (ENSMUSG00000026842.16, intron 1 of 10) 30944 ENSMUSG00000118600.1 ENSMUSG00000118600 ENSMUST00000239231 AL929275.1 protein_coding Interval_11407 chr1 181758968 181759972 + 0 NA intron (ENSMUSG00000047369.17, intron 65 of 84) protein_coding-intron (ENSMUSG00000047369.17, intron 9 of 11) 54230 ENSMUSG00000064970.1 ENSMUSG00000064970 ENSMUST00000083036 Gm23690 snRNA Interval_12088 chr1 189671060 189671262 + 0 NA promoter-TSS (ENSMUSG00000026605.14) protein_coding-promoter-TSS (ENSMUSG00000026605.14) -19 ENSMUSG00000026605.14 ENSMUSG00000026605 ENSMUST00000194165 Cenpf protein_coding Interval_46361 chr13 64204824 64206174 + 0 NA exon (ENSMUSG00000033102.15, exon 4 of 5) protein_coding-exon (ENSMUSG00000033102.15, exon 4 of 5) -5024 ENSMUSG00000113804.1 ENSMUSG00000113804 ENSMUST00000221567 Gm46424 processed_pseudogene Interval_165248 chr9 45763335 45763738 + 0 NA Intergenic Intergenic 30730 ENSMUSG00000043987.18 ENSMUSG00000043987 ENSMUST00000214868 Cep164 protein_coding Interval_171216 chr9 115283375 115284168 + 0 NA intron (ENSMUSG00000032437.10, intron 1 of 15) protein_coding-intron (ENSMUSG00000032437.10, intron 1 of 15) -1790 ENSMUSG00000111564.1 ENSMUSG00000111564 ENSMUST00000214793 Stmn1-rs1 processed_pseudogene Interval_86206 chr19 37812806 37813502 + 0 NA Intergenic Intergenic 28888 ENSMUSG00000117939.1 ENSMUSG00000117939 ENSMUST00000236017 Gm9067 processed_pseudogene Interval_29414 chr11 83822671 83823389 + 0 NA intron (ENSMUSG00000085235.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000085235.1, intron 1 of 1) -21635 ENSMUSG00000084666.1 ENSMUSG00000084666 ENSMUST00000122717 Gm23211 misc_RNA Interval_59899 chr15 61193937 61194307 + 0 NA intron (ENSMUSG00000116000.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000116000.1, intron 1 of 2) 9971 ENSMUSG00000116000.1 ENSMUSG00000116000 ENSMUST00000229129 Gm49497 lincRNA Interval_1751 chr1 33535530 33535728 + 0 NA intron (ENSMUSG00000026134.11, intron 7 of 13) protein_coding-intron (ENSMUSG00000026134.11, intron 7 of 13) 53528 ENSMUSG00000101682.1 ENSMUSG00000101682 ENSMUST00000185489 Gm29228 processed_pseudogene Interval_108367 chr3 126015842 126016700 + 0 NA Intergenic Intergenic -100386 ENSMUSG00000032854.12 ENSMUSG00000032854 ENSMUST00000196481 Ugt8a protein_coding Interval_68053 chr16 64766752 64767271 + 0 NA promoter-TSS (ENSMUSG00000059920.9) protein_coding-promoter-TSS (ENSMUSG00000059920.9) -355 ENSMUSG00000059920.9 ENSMUSG00000059920 ENSMUST00000076991 4930453N24Rik protein_coding Interval_87836 chr19 56385701 56385981 + 0 NA intron (ENSMUSG00000049134.15, intron 4 of 36) protein_coding-intron (ENSMUSG00000049134.15, intron 4 of 40) -5976 ENSMUSG00000049134.15 ENSMUSG00000049134 ENSMUST00000166203 Nrap protein_coding Interval_104666 chr3 69243656 69244511 + 0 NA Intergenic Intergenic 21664 ENSMUSG00000098207.1 ENSMUSG00000098207 ENSMUST00000183126 Arl14 protein_coding Interval_76547 chr17 80943634 80945391 + 0 NA promoter-TSS (ENSMUSG00000024245.4) protein_coding-promoter-TSS (ENSMUSG00000024245.4) -120 ENSMUSG00000024245.4 ENSMUSG00000024245 ENSMUST00000025092 Tmem178 protein_coding Interval_115325 chr4 96463218 96464383 + 0 NA intron (ENSMUSG00000082932.3, intron 7 of 8) protein_coding-intron (ENSMUSG00000082932.3, intron 7 of 8) 43586 ENSMUSG00000082932.3 ENSMUSG00000082932 ENSMUST00000124729 Cyp2j8 protein_coding Interval_10762 chr1 174426632 174427061 + 0 NA intron (ENSMUSG00000051509.6, intron 1 of 1) protein_coding-intron (ENSMUSG00000051509.6, intron 1 of 1) 2782 ENSMUSG00000051509.6 ENSMUSG00000051509 ENSMUST00000053178 Olfr414 protein_coding Interval_19536 chr10 102498780 102499151 + 0 NA Intergenic Intergenic -8479 ENSMUSG00000019890.4 ENSMUSG00000019890 ENSMUST00000020040 Nts protein_coding Interval_97981 chr2 146390082 146390687 + 0 NA intron (ENSMUSG00000037110.20, intron 22 of 41) protein_coding-intron (ENSMUSG00000037110.20, intron 21 of 40) 84837 ENSMUSG00000042938.8 ENSMUSG00000042938 ENSMUST00000122417 Gm14117 processed_pseudogene Interval_95653 chr2 113534518 113535916 + 0 NA intron (ENSMUSG00000044042.19, intron 6 of 17) protein_coding-intron (ENSMUSG00000044042.19, intron 5 of 16) -31183 ENSMUSG00000087106.1 ENSMUSG00000087106 ENSMUST00000133815 Gm13964 antisense Interval_171605 chr9 119483508 119486244 + 0 NA exon (ENSMUSG00000032511.17, exon 27 of 27) protein_coding-exon (ENSMUSG00000032511.17, exon 27 of 27) 39900 ENSMUSG00000042787.15 ENSMUSG00000042787 ENSMUST00000214462 Exog protein_coding Interval_60655 chr15 75968741 75969801 + 0 NA promoter-TSS (ENSMUSG00000034429.15) protein_coding-promoter-TSS (ENSMUSG00000034429.15) -936 ENSMUSG00000116120.1 ENSMUSG00000116120 ENSMUST00000230806 Eif2s3x-ps1 processed_pseudogene Interval_12844 chr10 6259563 6259783 + 0 NA Intergenic Intergenic -108003 ENSMUSG00000112179.1 ENSMUSG00000112179 ENSMUST00000219296 Gm3213 processed_pseudogene Interval_68416 chr16 76293967 76295514 + 0 NA TTS (ENSMUSG00000048490.14) protein_coding-TTS (ENSMUSG00000048490.14) 79086 ENSMUSG00000048490.14 ENSMUSG00000048490 ENSMUST00000145649 Nrip1 protein_coding Interval_167534 chr9 70277230 70278218 + 0 NA intron (ENSMUSG00000032220.10, intron 1 of 17) protein_coding-intron (ENSMUSG00000032220.10, intron 1 of 27) 70374 ENSMUSG00000032220.10 ENSMUSG00000032220 ENSMUST00000034745 Myo1e protein_coding Interval_159211 chr8 91782398 91782879 + 0 NA Intergenic Intergenic 11610 ENSMUSG00000110304.1 ENSMUSG00000110304 ENSMUST00000210339 Gm36380 lincRNA Interval_100046 chr2 166737494 166737738 + 0 NA Intergenic Intergenic -31129 ENSMUSG00000088063.1 ENSMUSG00000088063 ENSMUST00000157438 Gm24477 snRNA Interval_148260 chr7 80151886 80153827 + 0 NA Intergenic Intergenic -2313 ENSMUSG00000108757.1 ENSMUSG00000108757 ENSMUST00000205955 Gm45202 lincRNA Interval_13040 chr10 9833360 9834497 + 0 NA intron (ENSMUSG00000019790.17, intron 8 of 25) protein_coding-intron (ENSMUSG00000019790.17, intron 8 of 27) -14343 ENSMUSG00000019790.17 ENSMUSG00000019790 ENSMUST00000219200 Stxbp5 protein_coding Interval_140096 chr6 114089823 114090252 + 0 NA Intergenic Intergenic 27841 ENSMUSG00000107474.1 ENSMUSG00000107474 ENSMUST00000204499 Gm43932 processed_pseudogene Interval_123411 chr5 32338245 32338584 + 0 NA intron (ENSMUSG00000029134.14, intron 45 of 58) protein_coding-intron (ENSMUSG00000029134.14, intron 44 of 57) 16469 ENSMUSG00000107078.1 ENSMUSG00000107078 ENSMUST00000202688 Gm36840 antisense Interval_169353 chr9 96630586 96631914 + 0 NA intron (ENSMUSG00000032413.12, intron 1 of 19) protein_coding-intron (ENSMUSG00000032413.12, intron 1 of 23) 46947 ENSMUSG00000100522.1 ENSMUSG00000100522 ENSMUST00000190191 Gm19280 processed_pseudogene Interval_143080 chr6 149126778 149127236 + 0 NA Intergenic Intergenic -3163 ENSMUSG00000067292.3 ENSMUSG00000067292 ENSMUST00000087348 Gm10203 protein_coding Interval_5433 chr1 88749801 88751444 + 0 NA Intergenic Intergenic -4268 ENSMUSG00000097398.2 ENSMUSG00000097398 ENSMUST00000180596 Platr5 lincRNA Interval_109363 chr3 139867253 139867689 + 0 NA Intergenic Intergenic -54707 ENSMUSG00000105880.1 ENSMUSG00000105880 ENSMUST00000197774 Gm43678 lincRNA Interval_99630 chr2 163689477 163689710 + 0 NA intron (ENSMUSG00000087129.1, intron 1 of 1) protein_coding-intron (ENSMUSG00000035268.14, intron 1 of 3) 2686 ENSMUSG00000087129.1 ENSMUSG00000087129 ENSMUST00000154065 Gm16316 antisense Interval_88051 chr19 58442674 58442885 + 0 NA intron (ENSMUSG00000025089.15, intron 3 of 9) protein_coding-intron (ENSMUSG00000025089.15, intron 4 of 10) 11687 ENSMUSG00000025089.15 ENSMUSG00000025089 ENSMUST00000135730 Gfra1 protein_coding Interval_88374 chr2 4541875 4543279 + 0 NA intron (ENSMUSG00000026657.17, intron 12 of 24) protein_coding-intron (ENSMUSG00000026657.17, intron 11 of 23) 44710 ENSMUSG00000086018.7 ENSMUSG00000086018 ENSMUST00000137801 Gm13179 antisense Interval_100215 chr2 167708396 167709642 + 0 NA intron (ENSMUSG00000006462.6, intron 1 of 3) lincRNA-intron (ENSMUSG00000006462.6, intron 1 of 3) 17842 ENSMUSG00000006462.6 ENSMUSG00000006462 ENSMUST00000130679 A530013C23Rik lincRNA Interval_27317 chr11 66142075 66142268 + 0 NA intron (ENSMUSG00000056752.16, intron 6 of 10) protein_coding-intron (ENSMUSG00000056752.16, intron 6 of 68) -25864 ENSMUSG00000084967.1 ENSMUSG00000084967 ENSMUST00000144922 Gm12296 processed_transcript Interval_16100 chr10 60735573 60736242 + 0 NA intron (ENSMUSG00000020100.15, intron 2 of 5) protein_coding-intron (ENSMUSG00000020100.15, intron 2 of 5) 16876 ENSMUSG00000020100.15 ENSMUSG00000020100 ENSMUST00000144989 Slc29a3 protein_coding Interval_141221 chr6 125730971 125731232 + 0 NA intron (ENSMUSG00000038115.16, intron 2 of 25) protein_coding-intron (ENSMUSG00000038115.16, intron 3 of 15) -8305 ENSMUSG00000089834.2 ENSMUSG00000089834 ENSMUST00000161498 Gm16303 processed_pseudogene Interval_134798 chr6 31623907 31624804 + 0 NA intron (ENSMUSG00000086804.8, intron 2 of 2) lincRNA-intron (ENSMUSG00000086804.8, intron 1 of 2) 41687 ENSMUSG00000084973.2 ENSMUSG00000084973 ENSMUST00000130777 Gm13848 lincRNA Interval_43633 chr13 34244179 34244511 + 0 NA intron (ENSMUSG00000038267.15, intron 3 of 9) protein_coding-intron (ENSMUSG00000038267.15, intron 3 of 10) 32907 ENSMUSG00000088573.1 ENSMUSG00000088573 ENSMUST00000157948 Gm24530 misc_RNA Interval_40802 chr12 108507117 108507550 + 0 NA exon (ENSMUSG00000058070.14, exon 7 of 7) protein_coding-exon (ENSMUSG00000058070.14, exon 7 of 7) 35480 ENSMUSG00000058070.14 ENSMUSG00000058070 ENSMUST00000123035 Eml1 protein_coding Interval_150782 chr7 114414592 114416645 + 0 NA promoter-TSS (ENSMUSG00000087475.3) lincRNA-promoter-TSS (ENSMUSG00000087475.3) -457 ENSMUSG00000087475.3 ENSMUSG00000087475 ENSMUST00000124673 4933406I18Rik lincRNA Interval_80682 chr18 46279906 46281154 + 0 NA intron (ENSMUSG00000024477.4, intron 1 of 2) protein_coding-intron (ENSMUSG00000024477.4, intron 1 of 7) 297 ENSMUSG00000024477.4 ENSMUSG00000024477 ENSMUST00000236205 Pggt1b protein_coding Interval_10182 chr1 166734712 166735035 + 0 NA Intergenic Intergenic -27272 ENSMUSG00000085841.1 ENSMUSG00000085841 ENSMUST00000135069 Gm4954 processed_pseudogene Interval_143290 chr7 4976916 4977415 + 0 NA Intergenic Intergenic -6204 ENSMUSG00000085272.7 ENSMUSG00000085272 ENSMUST00000133272 Sbk3 protein_coding Interval_82118 chr18 67828821 67829127 + 0 NA intron (ENSMUSG00000024542.9, intron 15 of 15) protein_coding-intron (ENSMUSG00000024542.9, intron 15 of 45) -29031 ENSMUSG00000118134.1 ENSMUSG00000118134 ENSMUST00000237968 4930549G23Rik antisense Interval_129703 chr5 121869099 121869609 + 0 NA exon (ENSMUSG00000042589.18, exon 18 of 23) protein_coding-exon (ENSMUSG00000042589.18, exon 18 of 23) -3291 ENSMUSG00000042589.18 ENSMUSG00000042589 ENSMUST00000125267 Cux2 protein_coding Interval_91973 chr2 52099187 52099427 + 0 NA TTS (ENSMUSG00000036202.16) protein_coding-TTS (ENSMUSG00000036202.16) -12826 ENSMUSG00000036202.16 ENSMUSG00000036202 ENSMUST00000152178 Rif1 protein_coding Interval_26896 chr11 61363423 61364366 + 0 NA intron (ENSMUSG00000010122.14, intron 6 of 8) protein_coding-intron (ENSMUSG00000010122.14, intron 6 of 16) 14451 ENSMUSG00000010122.14 ENSMUSG00000010122 ENSMUST00000148671 Slc47a1 protein_coding Interval_110098 chr3 153275834 153278222 + 0 NA intron (ENSMUSG00000052544.9, intron 3 of 4) protein_coding-intron (ENSMUSG00000052544.9, intron 2 of 2) 21621 ENSMUSG00000105023.1 ENSMUSG00000105023 ENSMUST00000197231 1700012D16Rik sense_intronic Interval_103508 chr3 45438951 45439239 + 0 NA exon (ENSMUSG00000103713.1, exon 1 of 1) TEC-exon (ENSMUSG00000103713.1, exon 1 of 1) 215 ENSMUSG00000100799.2 ENSMUSG00000100799 ENSMUST00000186818 1700027H10Rik antisense Interval_104632 chr3 68975740 68976581 + 0 NA intron (ENSMUSG00000027778.15, intron 5 of 5) protein_coding-intron (ENSMUSG00000027778.15, intron 4 of 18) 28365 ENSMUSG00000027778.15 ENSMUSG00000027778 ENSMUST00000192467 Ift80 protein_coding Interval_52790 chr14 50249289 50249798 + 0 NA Intergenic Intergenic -7839 ENSMUSG00000048080.2 ENSMUSG00000048080 ENSMUST00000059565 Olfr731 protein_coding Interval_24275 chr11 32010191 32010719 + 0 NA intron (ENSMUSG00000020297.10, intron 2 of 2) protein_coding-intron (ENSMUSG00000020297.10, intron 2 of 4) 9992 ENSMUSG00000020297.10 ENSMUSG00000020297 ENSMUST00000093219 Nsg2 protein_coding Interval_26557 chr11 58846823 58847629 + 0 NA promoter-TSS (ENSMUSG00000072915.3) protein_coding-promoter-TSS (ENSMUSG00000072915.3) 10 ENSMUSG00000072915.3 ENSMUSG00000072915 ENSMUST00000093768 Gm12258 protein_coding Interval_161763 chr8 122618064 122618530 + 0 NA intron (ENSMUSG00000092329.1, intron 1 of 15) protein_coding-intron (ENSMUSG00000092329.1, intron 1 of 15) 4078 ENSMUSG00000098500.1 ENSMUSG00000098500 ENSMUST00000183603 Mir6396 miRNA Interval_174409 chrX 151791561 151793581 + 0 NA Intergenic Intergenic 9049 ENSMUSG00000083719.1 ENSMUSG00000083719 ENSMUST00000117340 Gm15161 processed_pseudogene Interval_143512 chr7 11248013 11248426 + 0 NA TTS (ENSMUSG00000109798.1) processed_pseudogene-TTS (ENSMUSG00000109798.1) 902 ENSMUSG00000109798.1 ENSMUSG00000109798 ENSMUST00000211110 Gm5996 processed_pseudogene Interval_63834 chr16 3860233 3860684 + 0 NA intron (ENSMUSG00000039789.7, intron 1 of 1) protein_coding-intron (ENSMUSG00000039789.7, intron 1 of 1) 5366 ENSMUSG00000039789.7 ENSMUSG00000039789 ENSMUST00000130254 Zfp597 protein_coding Interval_506 chr1 6576080 6576433 + 0 NA intron (ENSMUSG00000033740.17, intron 2 of 22) protein_coding-intron (ENSMUSG00000033740.17, intron 2 of 22) -134960 ENSMUSG00000103845.1 ENSMUSG00000103845 ENSMUST00000194240 Gm19026 processed_pseudogene Interval_59682 chr15 57921445 57921757 + 0 NA intron (ENSMUSG00000022364.14, intron 2 of 13) protein_coding-intron (ENSMUSG00000022364.14, intron 3 of 20) 5588 ENSMUSG00000022364.14 ENSMUSG00000022364 ENSMUST00000161329 Tbc1d31 protein_coding Interval_127556 chr5 105239339 105239712 + 0 NA promoter-TSS (ENSMUSG00000105096.1) protein_coding-promoter-TSS (ENSMUSG00000105096.1) -17549 ENSMUSG00000105096.1 ENSMUSG00000105096 ENSMUST00000196634 Gbp10 protein_coding Interval_17874 chr10 80533722 80533897 + 0 NA intron (ENSMUSG00000003341.9, intron 6 of 26) protein_coding-intron (ENSMUSG00000003341.9, intron 6 of 27) 5315 ENSMUSG00000003341.9 ENSMUSG00000003341 ENSMUST00000219648 Atp8b3 protein_coding Interval_96236 chr2 120825015 120826051 + 0 NA intron (ENSMUSG00000090100.7, intron 1 of 15) protein_coding-intron (ENSMUSG00000090100.7, intron 1 of 15) 24857 ENSMUSG00000090100.7 ENSMUSG00000090100 ENSMUST00000141921 Ttbk2 protein_coding Interval_105782 chr3 89308224 89308897 + 0 NA Intergenic Intergenic 6082 ENSMUSG00000093093.2 ENSMUSG00000093093 ENSMUST00000175352 Gm22642 misc_RNA Interval_77614 chr17 93114679 93114955 + 0 NA Intergenic Intergenic -53695 ENSMUSG00000117591.1 ENSMUSG00000117591 ENSMUST00000234088 Gm49997 processed_pseudogene Interval_10805 chr1 175330511 175330766 + 0 NA intron (ENSMUSG00000026527.13, intron 2 of 17) protein_coding-intron (ENSMUSG00000026527.13, intron 1 of 15) 50038 ENSMUSG00000104343.1 ENSMUSG00000104343 ENSMUST00000194955 5730408A14Rik TEC Interval_103717 chr3 51972511 51972921 + 0 NA intron (ENSMUSG00000061143.15, intron 1 of 4) protein_coding-intron (ENSMUSG00000061143.15, intron 1 of 4) -8225 ENSMUSG00000104161.1 ENSMUSG00000104161 ENSMUST00000192391 Gm20089 antisense Interval_169480 chr9 98126582 98126812 + 0 NA Intergenic Intergenic 60456 ENSMUSG00000046995.3 ENSMUSG00000046995 ENSMUST00000061643 2610303G11Rik lincRNA Interval_110474 chr3 159035267 159036000 + 0 NA Intergenic Intergenic -40731 ENSMUSG00000106053.1 ENSMUSG00000106053 ENSMUST00000197341 Gm20752 lincRNA Interval_32809 chr11 110944994 110945370 + 0 NA Intergenic Intergenic -22851 ENSMUSG00000051497.15 ENSMUSG00000051497 ENSMUST00000178798 Kcnj16 protein_coding Interval_117813 chr4 126370783 126371462 + 0 NA intron (ENSMUSG00000028842.15, intron 8 of 18) protein_coding-intron (ENSMUSG00000028842.15, intron 8 of 18) 33213 ENSMUSG00000028842.15 ENSMUSG00000028842 ENSMUST00000123233 Ago3 protein_coding Interval_166476 chr9 59935973 59937575 + 0 NA intron (ENSMUSG00000110803.1, intron 2 of 3) antisense-intron (ENSMUSG00000110803.1, intron 2 of 3) 4303 ENSMUSG00000110803.1 ENSMUSG00000110803 ENSMUST00000215963 Gm20275 antisense Interval_64760 chr16 15523749 15523977 + 0 NA Intergenic Intergenic -63502 ENSMUSG00000116386.1 ENSMUSG00000116386 ENSMUST00000229197 Gm49538 processed_pseudogene Interval_160590 chr8 110894390 110896458 + 0 NA intron (ENSMUSG00000033703.9, intron 5 of 23) protein_coding-intron (ENSMUSG00000033703.9, intron 5 of 23) 7064 ENSMUSG00000033703.9 ENSMUSG00000033703 ENSMUST00000212568 Fcsk protein_coding Interval_80265 chr18 38625695 38626017 + 0 NA intron (ENSMUSG00000118257.1, intron 2 of 3) lincRNA-intron (ENSMUSG00000118257.1, intron 2 of 3) -1431 ENSMUSG00000118257.1 ENSMUSG00000118257 ENSMUST00000134388 9630014M24Rik lincRNA Interval_122077 chr5 16424469 16426286 + 0 NA Intergenic Intergenic -81196 ENSMUSG00000106177.1 ENSMUSG00000106177 ENSMUST00000197133 Gm43491 processed_pseudogene Interval_72059 chr17 27780412 27780669 + 0 NA intron (ENSMUSG00000056692.13, intron 2 of 3) protein_coding-intron (ENSMUSG00000056692.13, intron 3 of 3) -3839 ENSMUSG00000080731.2 ENSMUSG00000080731 ENSMUST00000121414 Rps2-ps9 transcribed_processed_pseudogene Interval_126812 chr5 93120927 93121220 + 0 NA intron (ENSMUSG00000058013.11, intron 1 of 9) protein_coding-intron (ENSMUSG00000058013.11, intron 1 of 9) 27537 ENSMUSG00000058013.11 ENSMUSG00000058013 ENSMUST00000201695 Septin11 protein_coding Interval_86604 chr19 41999447 42000462 + 0 NA intron (ENSMUSG00000025171.2, intron 1 of 2) protein_coding-intron (ENSMUSG00000025171.2, intron 1 of 2) -17195 ENSMUSG00000025171.2 ENSMUSG00000025171 ENSMUST00000237817 Ubtd1 protein_coding Interval_74280 chr17 47863654 47865136 + 0 NA Intergenic Intergenic 14558 ENSMUSG00000023991.16 ENSMUSG00000023991 ENSMUST00000153752 Foxp4 protein_coding Interval_44083 chr13 40764665 40765140 + 0 NA Intergenic Intergenic -9908 ENSMUSG00000114640.1 ENSMUSG00000114640 ENSMUST00000224849 Gm48107 lincRNA Interval_95666 chr2 113847853 113849332 + 0 NA promoter-TSS (ENSMUSG00000041219.14) protein_coding-promoter-TSS (ENSMUSG00000041219.14) 23 ENSMUSG00000041219.14 ENSMUSG00000041219 ENSMUST00000110947 Arhgap11a protein_coding Interval_68664 chr16 84073195 84073541 + 0 NA Intergenic Intergenic -15984 ENSMUSG00000116745.1 ENSMUSG00000116745 ENSMUST00000231610 Gm41481 lincRNA Interval_82166 chr18 68235916 68236216 + 0 NA intron (ENSMUSG00000024544.9, intron 2 of 5) protein_coding-intron (ENSMUSG00000024544.9, intron 4 of 5) 7999 ENSMUSG00000024544.9 ENSMUSG00000024544 ENSMUST00000236987 Ldlrad4 protein_coding Interval_100590 chr2 170293078 170294090 + 0 NA Intergenic Intergenic 8549 ENSMUSG00000084013.1 ENSMUSG00000084013 ENSMUST00000118388 Gm14270 processed_pseudogene Interval_80250 chr18 38551388 38551686 + 0 NA Intergenic Intergenic -31313 ENSMUSG00000118296.1 ENSMUSG00000118296 ENSMUST00000236625 Gm19100 processed_pseudogene Interval_85292 chr19 24432698 24432941 + 0 NA intron (ENSMUSG00000024867.14, intron 3 of 3) protein_coding-intron (ENSMUSG00000024867.14, intron 3 of 14) 16810 ENSMUSG00000085003.1 ENSMUSG00000085003 ENSMUST00000126936 Pip5k1bos antisense Interval_76191 chr17 76597840 76598172 + 0 NA Intergenic Intergenic 223484 ENSMUSG00000117498.1 ENSMUSG00000117498 ENSMUST00000234836 Gm18366 processed_pseudogene Interval_174365 chrX 150400830 150401350 + 0 NA intron (ENSMUSG00000041353.12, intron 2 of 2) protein_coding-intron (ENSMUSG00000041353.12, intron 2 of 2) -30413 ENSMUSG00000082974.1 ENSMUSG00000082974 ENSMUST00000119673 Gm15129 processed_pseudogene Interval_167993 chr9 75311952 75312378 + 0 NA intron (ENSMUSG00000032192.9, intron 2 of 12) protein_coding-intron (ENSMUSG00000032192.9, intron 1 of 11) 2706 ENSMUSG00000111348.1 ENSMUSG00000111348 ENSMUST00000216737 Gm19531 antisense Interval_55560 chr14 92233971 92234663 + 0 NA TTS (ENSMUSG00000115308.1) processed_pseudogene-TTS (ENSMUSG00000115308.1) 812 ENSMUSG00000115308.1 ENSMUSG00000115308 ENSMUST00000228682 Gm48944 processed_pseudogene Interval_24134 chr11 30655921 30657375 + 0 NA Intergenic Intergenic -7061 ENSMUSG00000060923.5 ENSMUSG00000060923 ENSMUST00000074613 Acyp2 protein_coding Interval_81007 chr18 52679559 52679811 + 0 NA Intergenic Intergenic -14005 ENSMUSG00000053624.4 ENSMUSG00000053624 ENSMUST00000066193 Gykl1 protein_coding Interval_88376 chr2 4557207 4557656 + 0 NA intron (ENSMUSG00000026657.17, intron 12 of 24) protein_coding-intron (ENSMUSG00000026657.17, intron 11 of 23) 29856 ENSMUSG00000086018.7 ENSMUSG00000086018 ENSMUST00000137801 Gm13179 antisense Interval_152279 chr7 131342187 131342613 + 0 NA TTS (ENSMUSG00000040177.10) protein_coding-TTS (ENSMUSG00000040177.10) 7902 ENSMUSG00000030859.8 ENSMUSG00000030859 ENSMUST00000084505 Fam24a protein_coding Interval_72513 chr17 30337320 30337589 + 0 NA intron (ENSMUSG00000062202.14, intron 4 of 7) protein_coding-intron (ENSMUSG00000062202.14, intron 6 of 11) 26375 ENSMUSG00000089222.1 ENSMUSG00000089222 ENSMUST00000158597 Gm25049 snRNA Interval_45005 chr13 51382419 51383235 + 0 NA intron (ENSMUSG00000112959.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000112959.1, intron 1 of 1) -25812 ENSMUSG00000067586.4 ENSMUSG00000067586 ENSMUST00000087978 S1pr3 protein_coding Interval_22229 chr11 7381175 7381487 + 0 NA Intergenic Intergenic -90957 ENSMUSG00000087637.1 ENSMUSG00000087637 ENSMUST00000149481 Gm11986 lincRNA Interval_110184 chr3 154058070 154058281 + 0 NA intron (ENSMUSG00000028360.10, intron 1 of 21) protein_coding-intron (ENSMUSG00000028360.10, intron 1 of 21) 11252 ENSMUSG00000028360.10 ENSMUSG00000028360 ENSMUST00000144677 Slc44a5 protein_coding Interval_23089 chr11 19866442 19867307 + 0 NA Intergenic Intergenic 83222 ENSMUSG00000081820.1 ENSMUSG00000081820 ENSMUST00000120073 Gm12029 processed_pseudogene Interval_43841 chr13 37517176 37517684 + 0 NA Intergenic Intergenic 7712 ENSMUSG00000100022.2 ENSMUSG00000100022 ENSMUST00000224398 Gm29590 lincRNA Interval_113281 chr4 53073929 53074291 + 0 NA intron (ENSMUSG00000015243.4, intron 23 of 49) protein_coding-intron (ENSMUSG00000015243.4, intron 23 of 49) -33184 ENSMUSG00000015243.4 ENSMUSG00000015243 ENSMUST00000149127 Abca1 protein_coding Interval_39393 chr12 87123915 87124776 + 0 NA TTS (ENSMUSG00000034126.5) protein_coding-TTS (ENSMUSG00000034126.5) -21823 ENSMUSG00000021032.13 ENSMUSG00000021032 ENSMUST00000110176 Ngb protein_coding Interval_52620 chr14 48055850 48056080 + 0 NA intron (ENSMUSG00000115060.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000115060.1, intron 1 of 2) 8954 ENSMUSG00000115060.1 ENSMUSG00000115060 ENSMUST00000228584 Gm49306 lincRNA Interval_22909 chr11 17279830 17280846 + 0 NA Intergenic Intergenic 18081 ENSMUSG00000082797.3 ENSMUSG00000082797 ENSMUST00000117065 Gm12015 processed_pseudogene Interval_59861 chr15 59983647 59984478 + 0 NA Intergenic Intergenic 6340 ENSMUSG00000093849.1 ENSMUSG00000093849 ENSMUST00000178617 Gm7083 processed_pseudogene Interval_13402 chr10 17808021 17809306 + 0 NA TTS (ENSMUSG00000039891.6) protein_coding-TTS (ENSMUSG00000039891.6) -8716 ENSMUSG00000093537.1 ENSMUSG00000093537 ENSMUST00000175829 Gm7584 processed_pseudogene Interval_96721 chr2 127443975 127444976 + 0 NA promoter-TSS (ENSMUSG00000027371.10) protein_coding-promoter-TSS (ENSMUSG00000027371.10) 90 ENSMUSG00000027371.10 ENSMUSG00000027371 ENSMUST00000137502 Fahd2a protein_coding Interval_58626 chr15 36664278 36664621 + 0 NA intron (ENSMUSG00000115127.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000115127.1, intron 1 of 1) -25654 ENSMUSG00000115834.1 ENSMUSG00000115834 ENSMUST00000226323 Gm10385 lincRNA Interval_129927 chr5 123109419 123110045 + 0 NA promoter-TSS (ENSMUSG00000104951.1) TEC-promoter-TSS (ENSMUSG00000104951.1) -964 ENSMUSG00000104951.1 ENSMUSG00000104951 ENSMUST00000200411 Gm43413 TEC Interval_35079 chr12 17154755 17155438 + 0 NA Intergenic Intergenic 21792 ENSMUSG00000051726.6 ENSMUSG00000051726 ENSMUST00000170580 Kcnf1 protein_coding Interval_23661 chr11 24186414 24186619 + 0 NA Intergenic Intergenic -13735 ENSMUSG00000085516.1 ENSMUSG00000085516 ENSMUST00000146717 4930538E20Rik antisense Interval_71824 chr17 26352614 26352866 + 0 NA Intergenic Intergenic -30118 ENSMUSG00000117551.1 ENSMUSG00000117551 ENSMUST00000234840 Gm50015 lincRNA Interval_1741 chr1 33406763 33408767 + 0 NA Intergenic Intergenic -14968 ENSMUSG00000065260.1 ENSMUSG00000065260 ENSMUST00000083326 Gm23453 snRNA Interval_170432 chr9 107935528 107937070 + 0 NA promoter-TSS (ENSMUSG00000102377.1) antisense-promoter-TSS (ENSMUSG00000102377.1) 95 ENSMUSG00000102377.1 ENSMUSG00000102377 ENSMUST00000193668 Gm37974 antisense Interval_93300 chr2 71775064 71775442 + 0 NA intron (ENSMUSG00000027111.16, intron 2 of 5) protein_coding-intron (ENSMUSG00000027111.16, intron 2 of 5) -11886 ENSMUSG00000027111.16 ENSMUSG00000027111 ENSMUST00000139760 Itga6 protein_coding Interval_5599 chr1 90092910 90093151 + 0 NA intron (ENSMUSG00000026301.16, intron 8 of 18) protein_coding-intron (ENSMUSG00000026301.16, intron 8 of 18) -38070 ENSMUSG00000026301.16 ENSMUSG00000026301 ENSMUST00000186522 Iqca protein_coding Interval_135112 chr6 35526357 35526637 + 0 NA intron (ENSMUSG00000029840.8, intron 1 of 2) protein_coding-intron (ENSMUSG00000029840.8, intron 1 of 3) -1859 ENSMUSG00000095986.1 ENSMUSG00000095986 ENSMUST00000175136 Gm23053 miRNA Interval_120068 chr4 141631213 141631772 + 0 NA promoter-TSS (ENSMUSG00000028917.14) protein_coding-promoter-TSS (ENSMUSG00000028917.14) -445 ENSMUSG00000028917.14 ENSMUSG00000028917 ENSMUST00000141844 Plekhm2 protein_coding Interval_100232 chr2 167815934 167816289 + 0 NA Intergenic Intergenic 17535 ENSMUSG00000087684.1 ENSMUSG00000087684 ENSMUST00000143649 1200007C13Rik lincRNA Interval_13875 chr10 24149024 24149872 + 0 NA promoter-TSS (ENSMUSG00000019998.6) protein_coding-promoter-TSS (ENSMUSG00000019998.6) 121 ENSMUSG00000019998.6 ENSMUSG00000019998 ENSMUST00000219553 Stx7 protein_coding Interval_145758 chr7 38094315 38094905 + 0 NA Intergenic Intergenic 4759 ENSMUSG00000002068.16 ENSMUSG00000002068 ENSMUST00000124979 Ccne1 protein_coding Interval_86329 chr19 38792245 38792623 + 0 NA intron (ENSMUSG00000024999.7, intron 19 of 20) protein_coding-intron (ENSMUSG00000024999.7, intron 19 of 20) 26803 ENSMUSG00000024999.7 ENSMUSG00000024999 ENSMUST00000025963 Noc3l protein_coding Interval_134786 chr6 31531706 31532837 + 0 NA intron (ENSMUSG00000025608.9, intron 1 of 7) protein_coding-intron (ENSMUSG00000025608.9, intron 1 of 7) -7960 ENSMUSG00000025608.9 ENSMUSG00000025608 ENSMUST00000136877 Podxl protein_coding Interval_134216 chr6 23132010 23133518 + 0 NA intron (ENSMUSG00000029695.13, intron 1 of 23) protein_coding-intron (ENSMUSG00000029695.13, intron 1 of 23) 152 ENSMUSG00000029695.13 ENSMUSG00000029695 ENSMUST00000152280 Aass protein_coding Interval_16355 chr10 62428152 62430106 + 0 NA TTS (ENSMUSG00000020079.15) protein_coding-TTS (ENSMUSG00000020079.15) -6721 ENSMUSG00000020080.8 ENSMUSG00000020080 ENSMUST00000159579 Hkdc1 protein_coding Interval_169828 chr9 102261201 102262526 + 0 NA intron (ENSMUSG00000032537.15, intron 1 of 4) protein_coding-intron (ENSMUSG00000032537.15, intron 1 of 15) -11873 ENSMUSG00000102702.1 ENSMUSG00000102702 ENSMUST00000193748 Gm37260 TEC Interval_163682 chr9 24286279 24286697 + 0 NA exon (ENSMUSG00000111002.1, exon 1 of 1) TEC-exon (ENSMUSG00000111002.1, exon 1 of 1) 1353 ENSMUSG00000111002.1 ENSMUSG00000111002 ENSMUST00000214088 Gm47674 TEC Interval_32061 chr11 104955961 104956363 + 0 NA intron (ENSMUSG00000040838.10, intron 115 of 187) protein_coding-intron (ENSMUSG00000040838.10, intron 115 of 187) 27946 ENSMUSG00000080694.1 ENSMUSG00000080694 ENSMUST00000118253 Gm11621 processed_pseudogene Interval_21603 chr10 130487137 130487405 + 0 NA intron (ENSMUSG00000091511.3, intron 1 of 5) protein_coding-intron (ENSMUSG00000091511.3, intron 1 of 5) 10125 ENSMUSG00000091511.3 ENSMUSG00000091511 ENSMUST00000164227 Vmn2r87 protein_coding Interval_58585 chr15 36389988 36390373 + 0 NA promoter-TSS (ENSMUSG00000114981.1) lincRNA-promoter-TSS (ENSMUSG00000114981.1) -8 ENSMUSG00000114981.1 ENSMUSG00000114981 ENSMUST00000226850 Gm34093 lincRNA Interval_83637 chr19 3368230 3369071 + 0 NA intron (ENSMUSG00000024900.5, intron 9 of 10) protein_coding-intron (ENSMUSG00000024900.5, intron 9 of 18) -7694 ENSMUSG00000024900.5 ENSMUSG00000024900 ENSMUST00000238027 Cpt1a protein_coding Interval_72717 chr17 31732257 31733164 + 0 NA Intergenic Intergenic -42285 ENSMUSG00000117656.1 ENSMUSG00000117656 ENSMUST00000237283 Gm50225 lincRNA Interval_144996 chr7 29319063 29320214 + 0 NA promoter-TSS (ENSMUSG00000109351.1) antisense-promoter-TSS (ENSMUSG00000109351.1) -236 ENSMUSG00000109351.1 ENSMUSG00000109351 ENSMUST00000207245 Gm44632 antisense Interval_99271 chr2 158584753 158585190 + 0 NA Intergenic Intergenic 25619 ENSMUSG00000086496.1 ENSMUSG00000086496 ENSMUST00000155319 Gm14204 processed_transcript Interval_139144 chr6 95980468 95980697 + 0 NA Intergenic Intergenic 52787 ENSMUSG00000107747.1 ENSMUSG00000107747 ENSMUST00000204737 Gm5881 processed_pseudogene Interval_4245 chr1 72149970 72150304 + 0 NA Intergenic Intergenic -28136 ENSMUSG00000102123.1 ENSMUSG00000102123 ENSMUST00000191139 Gm4319 lincRNA Interval_54670 chr14 73159842 73160523 + 0 NA intron (ENSMUSG00000022106.14, intron 5 of 15) protein_coding-intron (ENSMUSG00000022106.14, intron 4 of 14) 17319 ENSMUSG00000022106.14 ENSMUSG00000022106 ENSMUST00000170278 Rcbtb2 protein_coding Interval_154691 chr8 22622725 22624284 + 0 NA promoter-TSS (ENSMUSG00000031535.7) protein_coding-promoter-TSS (ENSMUSG00000031535.7) -539 ENSMUSG00000031535.7 ENSMUSG00000031535 ENSMUST00000033936 Dkk4 protein_coding Interval_72405 chr17 29635682 29636363 + 0 NA TTS (ENSMUSG00000090083.11) protein_coding-TTS (ENSMUSG00000090083.11) 2504 ENSMUSG00000090083.11 ENSMUSG00000090083 ENSMUST00000172800 Rnf8 protein_coding Interval_53793 chr14 61833886 61835111 + 0 NA Intergenic Intergenic -86878 ENSMUSG00000114706.1 ENSMUSG00000114706 ENSMUST00000224682 Gm47952 processed_pseudogene Interval_47862 chr13 93965146 93967976 + 0 NA Intergenic Intergenic 10251 ENSMUSG00000089486.1 ENSMUSG00000089486 ENSMUST00000158861 Gm24737 snRNA Interval_34895 chr12 13066977 13067854 + 0 NA Intergenic Intergenic -12686 ENSMUSG00000113928.1 ENSMUSG00000113928 ENSMUST00000220969 Gm48209 lincRNA Interval_95312 chr2 106223127 106223542 + 0 NA intron (ENSMUSG00000074981.13, intron 1 of 18) transcribed_unitary_pseudogene-intron (ENSMUSG00000074981.13, intron 15 of 35) 1277 ENSMUSG00000074981.13 ENSMUSG00000074981 ENSMUST00000037284 Dcdc5 transcribed_unitary_pseudogene Interval_62694 chr15 96321276 96321573 + 0 NA intron (ENSMUSG00000033237.19, intron 3 of 4) protein_coding-intron (ENSMUSG00000033237.19, intron 3 of 20) -36929 ENSMUSG00000097536.2 ENSMUSG00000097536 ENSMUST00000185067 2610037D02Rik lincRNA Interval_148231 chr7 80005003 80005651 + 0 NA Intergenic Intergenic -22487 ENSMUSG00000048897.15 ENSMUSG00000048897 ENSMUST00000206104 Zfp710 protein_coding Interval_90406 chr2 30242245 30243251 + 0 NA intron (ENSMUSG00000099041.1, intron 1 of 12) protein_coding-intron (ENSMUSG00000007476.18, intron 2 of 3) 2181 ENSMUSG00000099041.1 ENSMUSG00000099041 ENSMUST00000139454 Gm28035 protein_coding Interval_56268 chr14 115495874 115496377 + 0 NA intron (ENSMUSG00000022112.14, intron 5 of 7) protein_coding-intron (ENSMUSG00000022112.14, intron 5 of 7) 60397 ENSMUSG00000093589.1 ENSMUSG00000093589 ENSMUST00000176139 Gm18367 processed_pseudogene Interval_82577 chr18 75259709 75260771 + 0 NA intron (ENSMUSG00000035765.10, intron 16 of 16) protein_coding-intron (ENSMUSG00000035765.10, intron 16 of 16) 37077 ENSMUSG00000102047.1 ENSMUSG00000102047 ENSMUST00000186356 2010010A06Rik transcribed_processed_pseudogene Interval_15830 chr10 57763032 57764091 + 0 NA Intergenic Intergenic -18793 ENSMUSG00000093552.1 ENSMUSG00000093552 ENSMUST00000177265 Gm5777 processed_pseudogene Interval_69264 chr16 91764766 91766814 + 0 NA intron (ENSMUSG00000022957.20, intron 1 of 6) protein_coding-intron (ENSMUSG00000022957.20, intron 1 of 28) -37193 ENSMUSG00000058240.14 ENSMUSG00000058240 ENSMUST00000123751 Cryzl1 protein_coding Interval_144872 chr7 28705510 28706236 + 0 NA Intergenic Intergenic 12834 ENSMUSG00000037463.14 ENSMUSG00000037463 ENSMUST00000127368 Fbxo27 protein_coding Interval_75567 chr17 68169906 68170104 + 0 NA intron (ENSMUSG00000117243.1, intron 1 of 3) lincRNA-intron (ENSMUSG00000117243.1, intron 1 of 3) 3551 ENSMUSG00000117243.1 ENSMUSG00000117243 ENSMUST00000232839 Gm49944 lincRNA Interval_122315 chr5 21232921 21233269 + 0 NA intron (ENSMUSG00000039934.12, intron 12 of 26) protein_coding-intron (ENSMUSG00000039934.12, intron 12 of 30) 19086 ENSMUSG00000104920.1 ENSMUSG00000104920 ENSMUST00000199108 Gm43215 processed_pseudogene Interval_151587 chr7 124312285 124313000 + 0 NA intron (ENSMUSG00000078591.1, intron 1 of 1) protein_coding-intron (ENSMUSG00000078591.1, intron 1 of 1) 125924 ENSMUSG00000085899.1 ENSMUSG00000085899 ENSMUST00000151884 Gm15338 sense_intronic Interval_23510 chr11 23041701 23041938 + 0 NA Intergenic Intergenic 21413 ENSMUSG00000088010.1 ENSMUSG00000088010 ENSMUST00000157385 Gm23740 rRNA Interval_95711 chr2 114576158 114576456 + 0 NA intron (ENSMUSG00000057147.13, intron 3 of 6) protein_coding-intron (ENSMUSG00000057147.13, intron 3 of 7) -78118 ENSMUSG00000084785.1 ENSMUSG00000084785 ENSMUST00000153726 Gm13972 processed_transcript Interval_75490 chr17 67303647 67304478 + 0 NA intron (ENSMUSG00000033278.10, intron 1 of 19) protein_coding-intron (ENSMUSG00000033278.10, intron 1 of 32) -247545 ENSMUSG00000087829.1 ENSMUSG00000087829 ENSMUST00000157204 Gm22277 misc_RNA Interval_103864 chr3 53854607 53855283 + 0 NA exon (ENSMUSG00000027746.13, exon 6 of 6) protein_coding-exon (ENSMUSG00000027746.13, exon 6 of 6) 8817 ENSMUSG00000027746.13 ENSMUSG00000027746 ENSMUST00000152414 Ufm1 protein_coding Interval_138413 chr6 87993767 87994658 + 0 NA promoter-TSS (ENSMUSG00000108227.1) TEC-promoter-TSS (ENSMUSG00000108227.1) -33 ENSMUSG00000108227.1 ENSMUSG00000108227 ENSMUST00000203702 4933412L11Rik TEC Interval_28717 chr11 77892695 77894540 + 0 NA intron (ENSMUSG00000017453.4, intron 1 of 7) protein_coding-intron (ENSMUSG00000017453.4, intron 1 of 7) -9073 ENSMUSG00000017453.4 ENSMUSG00000017453 ENSMUST00000155401 Pipox protein_coding Interval_2728 chr1 43942870 43944973 + 0 NA intron (ENSMUSG00000041763.14, intron 2 of 5) protein_coding-intron (ENSMUSG00000041763.14, intron 2 of 29) 9907 ENSMUSG00000041763.14 ENSMUSG00000041763 ENSMUST00000187115 Tpp2 protein_coding Interval_163298 chr9 20681627 20682803 + 0 NA intron (ENSMUSG00000032172.8, intron 1 of 5) protein_coding-intron (ENSMUSG00000032172.8, intron 1 of 5) 30120 ENSMUSG00000032171.7 ENSMUSG00000032171 ENSMUST00000034689 Pin1 protein_coding Interval_89662 chr2 24281163 24281412 + 0 NA TTS (ENSMUSG00000026983.10) protein_coding-TTS (ENSMUSG00000026983.10) 4016 ENSMUSG00000026983.10 ENSMUSG00000026983 ENSMUST00000123577 Il1f5 protein_coding Interval_82277 chr18 69898639 69899521 + 0 NA intron (ENSMUSG00000118028.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000118028.1, intron 1 of 1) 11644 ENSMUSG00000118028.1 ENSMUSG00000118028 ENSMUST00000235804 Gm50215 lincRNA Interval_171172 chr9 114956953 114957515 + 0 NA Intergenic Intergenic -23247 ENSMUSG00000050627.13 ENSMUSG00000050627 ENSMUST00000146266 Gpd1l protein_coding Interval_109240 chr3 138186546 138186776 + 0 NA promoter-TSS (ENSMUSG00000012042.9) protein_coding-promoter-TSS (ENSMUSG00000012042.9) -34810 ENSMUSG00000055301.8 ENSMUSG00000055301 ENSMUST00000196133 Adh7 protein_coding Interval_29839 chr11 87179360 87179887 + 0 NA intron (ENSMUSG00000018548.15, intron 13 of 23) protein_coding-intron (ENSMUSG00000018548.15, intron 13 of 23) -10451 ENSMUSG00000018548.15 ENSMUSG00000018548 ENSMUST00000154138 Trim37 protein_coding Interval_93459 chr2 73213621 73214883 + 0 NA promoter-TSS (ENSMUSG00000027108.15) protein_coding-promoter-TSS (ENSMUSG00000027108.15) 174 ENSMUSG00000027108.15 ENSMUSG00000027108 ENSMUST00000133228 Ola1 protein_coding Interval_145469 chr7 35000580 35001320 + 0 NA intron (ENSMUSG00000063931.14, intron 5 of 6) protein_coding-intron (ENSMUSG00000063931.14, intron 9 of 14) 31440 ENSMUSG00000063931.14 ENSMUSG00000063931 ENSMUST00000160459 Pepd protein_coding Interval_109633 chr3 145592407 145593156 + 0 NA intron (ENSMUSG00000074182.8, intron 6 of 10) protein_coding-intron (ENSMUSG00000074182.8, intron 5 of 9) 16534 ENSMUSG00000074182.8 ENSMUSG00000074182 ENSMUST00000197474 Znhit6 protein_coding Interval_147570 chr7 68327584 68327998 + 0 NA intron (ENSMUSG00000074071.11, intron 3 of 4) protein_coding-intron (ENSMUSG00000074071.11, intron 4 of 8) -5198 ENSMUSG00000109096.1 ENSMUSG00000109096 ENSMUST00000209119 Gm44888 TEC Interval_11546 chr1 182598810 182598997 + 0 NA intron (ENSMUSG00000038599.14, intron 5 of 9) protein_coding-intron (ENSMUSG00000038599.14, intron 5 of 20) 33896 ENSMUSG00000038599.14 ENSMUSG00000038599 ENSMUST00000192671 Capn8 protein_coding Interval_130494 chr5 128389867 128390075 + 0 NA intron (ENSMUSG00000034310.8, intron 1 of 8) protein_coding-intron (ENSMUSG00000034310.8, intron 1 of 8) 53194 ENSMUSG00000105857.1 ENSMUSG00000105857 ENSMUST00000198962 Gm42817 antisense Interval_36206 chr12 39128055 39128371 + 0 NA intron (ENSMUSG00000113272.1, intron 2 of 2) lincRNA-intron (ENSMUSG00000113272.1, intron 2 of 2) 26548 ENSMUSG00000113272.1 ENSMUSG00000113272 ENSMUST00000220510 Gm34809 lincRNA Interval_79610 chr18 33996360 33997210 + 0 NA intron (ENSMUSG00000024376.7, intron 2 of 2) protein_coding-intron (ENSMUSG00000024376.7, intron 2 of 23) 10181 ENSMUSG00000024376.7 ENSMUSG00000024376 ENSMUST00000237971 Epb41l4a protein_coding Interval_39256 chr12 86220414 86221283 + 0 NA Intergenic Intergenic -40828 ENSMUSG00000021254.9 ENSMUSG00000021254 ENSMUST00000222299 Gpatch2l protein_coding Interval_149627 chr7 100147850 100148116 + 0 NA Intergenic Intergenic -11376 ENSMUSG00000030725.4 ENSMUSG00000030725 ENSMUST00000207825 Lipt2 protein_coding Interval_19328 chr10 96751481 96752364 + 0 NA Intergenic Intergenic 17906 ENSMUSG00000112588.1 ENSMUSG00000112588 ENSMUST00000218614 Gm6859 processed_pseudogene Interval_45610 chr13 56235945 56237101 + 0 NA intron (ENSMUSG00000097361.1, intron 3 of 4) lincRNA-intron (ENSMUSG00000097361.1, intron 3 of 4) 7417 ENSMUSG00000097361.1 ENSMUSG00000097361 ENSMUST00000181629 4930550C17Rik lincRNA Interval_128995 chr5 116518140 116518653 + 0 NA intron (ENSMUSG00000063919.11, intron 1 of 12) protein_coding-intron (ENSMUSG00000063919.11, intron 1 of 12) -15680 ENSMUSG00000107172.1 ENSMUSG00000107172 ENSMUST00000200924 4933430H06Rik TEC Interval_42472 chr13 13953735 13955225 + 0 NA promoter-TSS (ENSMUSG00000039242.10) protein_coding-promoter-TSS (ENSMUSG00000039242.10) -194 ENSMUSG00000039242.10 ENSMUSG00000039242 ENSMUST00000222420 B3galnt2 protein_coding Interval_66652 chr16 35870643 35872252 + 0 NA promoter-TSS (ENSMUSG00000034422.14) protein_coding-promoter-TSS (ENSMUSG00000034422.14) -65 ENSMUSG00000034422.14 ENSMUSG00000034422 ENSMUST00000135669 Parp14 protein_coding Interval_90204 chr2 29009938 29010759 + 0 NA intron (ENSMUSG00000079502.8, intron 1 of 6) protein_coding-intron (ENSMUSG00000079502.8, intron 1 of 5) 29012 ENSMUSG00000079502.8 ENSMUSG00000079502 ENSMUST00000113843 Cfap77 protein_coding Interval_66511 chr16 34653970 34654577 + 0 NA intron (ENSMUSG00000022832.11, intron 1 of 5) protein_coding-intron (ENSMUSG00000022832.11, intron 1 of 5) -12044 ENSMUSG00000022832.11 ENSMUSG00000022832 ENSMUST00000231612 Ropn1 protein_coding Interval_116484 chr4 114497651 114498264 + 0 NA intron (ENSMUSG00000070867.4, intron 2 of 6) protein_coding-intron (ENSMUSG00000070867.4, intron 2 of 6) 91233 ENSMUSG00000070867.4 ENSMUSG00000070867 ENSMUST00000094894 Trabd2b protein_coding Interval_138597 chr6 90078774 90078973 + 0 NA promoter-TSS (ENSMUSG00000095932.3) protein_coding-promoter-TSS (ENSMUSG00000095932.3) -367 ENSMUSG00000095932.3 ENSMUSG00000095932 ENSMUST00000071865 Vmn1r49 protein_coding Interval_8284 chr1 136924195 136924489 + 0 NA intron (ENSMUSG00000026398.14, intron 6 of 8) protein_coding-intron (ENSMUSG00000026398.14, intron 6 of 8) 24831 ENSMUSG00000026398.14 ENSMUSG00000026398 ENSMUST00000195428 Nr5a2 protein_coding Interval_167948 chr9 74867790 74868775 + 0 NA intron (ENSMUSG00000043013.10, intron 1 of 1) protein_coding-intron (ENSMUSG00000043013.10, intron 1 of 1) 1798 ENSMUSG00000043013.10 ENSMUSG00000043013 ENSMUST00000160499 Onecut1 protein_coding Interval_88455 chr2 5268166 5269058 + 0 NA Intergenic Intergenic -8497 ENSMUSG00000084606.1 ENSMUSG00000084606 ENSMUST00000122657 Gm23118 snRNA Interval_128055 chr5 110548911 110549884 + 0 NA intron (ENSMUSG00000033316.14, intron 1 of 10) protein_coding-intron (ENSMUSG00000033316.14, intron 1 of 10) 34453 ENSMUSG00000048215.14 ENSMUSG00000048215 ENSMUST00000129007 A630023P12Rik lincRNA Interval_112116 chr4 34801111 34802140 + 0 NA Intergenic Intergenic -23270 ENSMUSG00000028295.14 ENSMUSG00000028295 ENSMUST00000131295 Smim8 protein_coding Interval_131392 chr5 136907583 136908548 + 0 NA promoter-TSS (ENSMUSG00000007987.12) protein_coding-promoter-TSS (ENSMUSG00000007987.12) -85 ENSMUSG00000007987.12 ENSMUSG00000007987 ENSMUST00000200054 Ift22 protein_coding Interval_80524 chr18 43343106 43343652 + 0 NA intron (ENSMUSG00000024501.20, intron 7 of 13) protein_coding-intron (ENSMUSG00000024501.20, intron 7 of 13) 29844 ENSMUSG00000024501.20 ENSMUSG00000024501 ENSMUST00000118071 Dpysl3 protein_coding Interval_45387 chr13 54805062 54806166 + 0 NA Intergenic Intergenic 15969 ENSMUSG00000025875.14 ENSMUSG00000025875 ENSMUST00000139574 Tspan17 protein_coding Interval_100355 chr2 168604612 168604915 + 0 NA Intergenic Intergenic -3108 ENSMUSG00000027544.16 ENSMUSG00000027544 ENSMUST00000138546 Nfatc2 protein_coding Interval_102482 chr3 27119467 27120034 + 0 NA intron (ENSMUSG00000027699.19, intron 19 of 23) protein_coding-intron (ENSMUSG00000027699.19, intron 19 of 23) 10768 ENSMUSG00000087742.1 ENSMUSG00000087742 ENSMUST00000157117 Gm25152 snoRNA Interval_105168 chr3 83102076 83102814 + 0 NA Intergenic Intergenic -25503 ENSMUSG00000102692.1 ENSMUSG00000102692 ENSMUST00000191829 Dchs2 protein_coding Interval_28231 chr11 74554695 74556957 + 0 NA intron (ENSMUSG00000038807.19, intron 3 of 25) protein_coding-intron (ENSMUSG00000038807.19, intron 3 of 25) 55089 ENSMUSG00000038807.19 ENSMUSG00000038807 ENSMUST00000145524 Rap1gap2 protein_coding Interval_113308 chr4 53355125 53355601 + 0 NA Intergenic Intergenic 47137 ENSMUSG00000083735.1 ENSMUSG00000083735 ENSMUST00000119750 Gm12495 processed_pseudogene Interval_156723 chr8 57611365 57611586 + 0 NA intron (ENSMUSG00000031608.13, intron 1 of 5) protein_coding-intron (ENSMUSG00000031608.13, intron 1 of 11) -4319 ENSMUSG00000110405.1 ENSMUSG00000110405 ENSMUST00000211449 Gm45534 TEC Interval_48708 chr13 101758382 101758727 + 0 NA intron (ENSMUSG00000041417.15, intron 1 of 1) protein_coding-intron (ENSMUSG00000041417.15, intron 1 of 15) -5349 ENSMUSG00000102635.1 ENSMUSG00000102635 ENSMUST00000193295 Gm36638 TEC Interval_11063 chr1 179093164 179093388 + 0 NA intron (ENSMUSG00000055067.15, intron 2 of 7) protein_coding-intron (ENSMUSG00000055067.15, intron 3 of 8) -175662 ENSMUSG00000089713.1 ENSMUSG00000089713 ENSMUST00000162545 Gm16564 antisense Interval_4765 chr1 78499752 78499932 + 0 NA intron (ENSMUSG00000090486.2, intron 1 of 1) protein_coding-intron (ENSMUSG00000090486.2, intron 1 of 1) 1323 ENSMUSG00000090486.2 ENSMUSG00000090486 ENSMUST00000190853 BC035947 protein_coding Interval_174496 chrX 153558454 153558704 + 0 NA promoter-TSS (ENSMUSG00000048573.9) protein_coding-promoter-TSS (ENSMUSG00000048573.9) -14 ENSMUSG00000048573.9 ENSMUSG00000048573 ENSMUST00000056754 Cypt3 protein_coding Interval_90125 chr2 28369223 28370574 + 0 NA Intergenic Intergenic -45848 ENSMUSG00000087196.1 ENSMUSG00000087196 ENSMUST00000144634 Gm13373 lincRNA Interval_19427 chr10 99168544 99169434 + 0 NA intron (ENSMUSG00000019952.15, intron 11 of 12) protein_coding-intron (ENSMUSG00000019952.15, intron 10 of 11) 15621 ENSMUSG00000089994.1 ENSMUSG00000089994 ENSMUST00000160182 Gm16239 antisense Interval_7898 chr1 134446935 134447162 + 0 NA Intergenic Intergenic 8425 ENSMUSG00000102722.1 ENSMUSG00000102722 ENSMUST00000192012 Gm37935 TEC Interval_771 chr1 10836713 10837402 + 0 NA Intergenic Intergenic -31631 ENSMUSG00000100648.1 ENSMUSG00000100648 ENSMUST00000188013 Gm28659 processed_pseudogene Interval_72910 chr17 33347266 33347517 + 0 NA intron (ENSMUSG00000003929.11, intron 1 of 4) protein_coding-intron (ENSMUSG00000003929.11, intron 1 of 3) 11477 ENSMUSG00000003929.11 ENSMUSG00000003929 ENSMUST00000235063 Zfp81 protein_coding Interval_38018 chr12 73989549 73990353 + 0 NA TTS (ENSMUSG00000021113.5) protein_coding-TTS (ENSMUSG00000021113.5) 25470 ENSMUSG00000021113.5 ENSMUSG00000021113 ENSMUST00000220909 Snapc1 protein_coding Interval_25386 chr11 47132765 47133745 + 0 NA intron (ENSMUSG00000020354.15, intron 3 of 6) protein_coding-intron (ENSMUSG00000020354.15, intron 3 of 7) 258842 ENSMUSG00000082818.1 ENSMUSG00000082818 ENSMUST00000122081 Gm12175 processed_pseudogene Interval_98497 chr2 152785603 152786361 + 0 NA intron (ENSMUSG00000007659.18, intron 2 of 2) protein_coding-intron (ENSMUSG00000007659.18, intron 2 of 2) -13093 ENSMUSG00000093306.1 ENSMUSG00000093306 ENSMUST00000175565 Gm23802 miRNA Interval_138952 chr6 93746356 93747297 + 0 NA intron (ENSMUSG00000045095.16, intron 10 of 19) protein_coding-intron (ENSMUSG00000045095.16, intron 10 of 21) -46946 ENSMUSG00000088627.1 ENSMUSG00000088627 ENSMUST00000158002 Gm23035 snRNA Interval_166467 chr9 59732753 59733627 + 0 NA Intergenic Intergenic 17448 ENSMUSG00000051705.13 ENSMUSG00000051705 ENSMUST00000216045 Senp8 protein_coding Interval_115454 chr4 99077596 99077928 + 0 NA intron (ENSMUSG00000028556.15, intron 7 of 47) protein_coding-intron (ENSMUSG00000028556.15, intron 7 of 48) -10651 ENSMUSG00000028556.15 ENSMUSG00000028556 ENSMUST00000206604 Dock7 protein_coding Interval_80062 chr18 37143329 37145058 + 0 NA exon (ENSMUSG00000102697.1, exon 1 of 4) protein_coding-exon (ENSMUSG00000102697.1, exon 1 of 4) 690 ENSMUSG00000102697.1 ENSMUSG00000102697 ENSMUST00000047479 Pcdhac2 protein_coding Interval_41184 chr12 111675417 111676979 + 0 NA Intergenic Intergenic -1918 ENSMUSG00000060950.12 ENSMUSG00000060950 ENSMUST00000222737 Trmt61a protein_coding Interval_103781 chr3 52732200 52732621 + 0 NA Intergenic Intergenic -7306 ENSMUSG00000102785.5 ENSMUSG00000102785 ENSMUST00000191954 Gm2447 lincRNA Interval_31794 chr11 102909283 102909501 + 0 NA intron (ENSMUSG00000051378.10, intron 11 of 15) protein_coding-intron (ENSMUSG00000051378.10, intron 11 of 15) -8480 ENSMUSG00000020932.14 ENSMUSG00000020932 ENSMUST00000127909 Gfap protein_coding Interval_145650 chr7 36731156 36731579 + 0 NA intron (ENSMUSG00000021217.7, intron 1 of 1) protein_coding-intron (ENSMUSG00000021217.7, intron 1 of 1) -1650 ENSMUSG00000104454.1 ENSMUSG00000104454 ENSMUST00000194486 Gm37827 TEC Interval_145167 chr7 30412909 30413139 + 0 NA promoter-TSS (ENSMUSG00000030579.10) protein_coding-promoter-TSS (ENSMUSG00000030579.10) -828 ENSMUSG00000030579.10 ENSMUSG00000030579 ENSMUST00000208125 Tyrobp protein_coding Interval_144432 chr7 25115162 25115780 + 0 NA exon (ENSMUSG00000008496.19, exon 3 of 5) protein_coding-exon (ENSMUSG00000008496.19, exon 3 of 5) 17041 ENSMUSG00000008496.19 ENSMUSG00000008496 ENSMUST00000175754 Pou2f2 protein_coding Interval_6622 chr1 118362447 118362776 + 0 NA exon (ENSMUSG00000099936.1, exon 3 of 3) lincRNA-exon (ENSMUSG00000099936.1, exon 3 of 3) 5299 ENSMUSG00000099936.1 ENSMUSG00000099936 ENSMUST00000190194 Gm28867 lincRNA Interval_154634 chr8 22176063 22176404 + 0 NA promoter-TSS (ENSMUSG00000037725.8) protein_coding-promoter-TSS (ENSMUSG00000037725.8) -6064 ENSMUSG00000037725.8 ENSMUSG00000037725 ENSMUST00000211045 Ckap2 protein_coding Interval_31963 chr11 104197714 104198300 + 0 NA Intergenic Intergenic 11680 ENSMUSG00000049506.7 ENSMUSG00000049506 ENSMUST00000059448 Sppl2c protein_coding Interval_55333 chr14 83215337 83215625 + 0 NA Intergenic Intergenic -190150 ENSMUSG00000088009.1 ENSMUSG00000088009 ENSMUST00000157384 Gm24774 snoRNA Interval_98389 chr2 152007772 152008330 + 0 NA exon (ENSMUSG00000027463.14, exon 5 of 5) protein_coding-exon (ENSMUSG00000027463.14, exon 5 of 5) 8186 ENSMUSG00000027463.14 ENSMUSG00000027463 ENSMUST00000109858 Slc52a3 protein_coding Interval_24798 chr11 38231491 38231822 + 0 NA Intergenic Intergenic 12587 ENSMUSG00000082587.1 ENSMUSG00000082587 ENSMUST00000120104 Gm12129 processed_pseudogene Interval_64804 chr16 15958566 15959699 + 0 NA intron (ENSMUSG00000041974.10, intron 10 of 16) protein_coding-intron (ENSMUSG00000041974.10, intron 10 of 19) 51877 ENSMUSG00000077350.1 ENSMUSG00000077350 ENSMUST00000104162 n-R5s31 rRNA Interval_20987 chr10 123058325 123058640 + 0 NA intron (ENSMUSG00000034602.15, intron 2 of 9) protein_coding-intron (ENSMUSG00000034602.15, intron 2 of 33) -28163 ENSMUSG00000034602.15 ENSMUSG00000034602 ENSMUST00000219203 Mon2 protein_coding Interval_82395 chr18 73673558 73674624 + 0 NA intron (ENSMUSG00000024515.13, intron 3 of 10) protein_coding-intron (ENSMUSG00000024515.13, intron 4 of 11) 6887 ENSMUSG00000118185.1 ENSMUSG00000118185 ENSMUST00000235991 Gm50126 processed_pseudogene Interval_143854 chr7 16766133 16766998 + 0 NA Intergenic Intergenic -15833 ENSMUSG00000001918.17 ENSMUSG00000001918 ENSMUST00000141349 Slc1a5 protein_coding Interval_68405 chr16 75979446 75979685 + 0 NA intron (ENSMUSG00000022876.18, intron 2 of 2) protein_coding-intron (ENSMUSG00000022876.18, intron 4 of 13) -21219 ENSMUSG00000087214.2 ENSMUSG00000087214 ENSMUST00000128832 Gm15555 antisense Interval_120459 chr4 148751312 148752947 + 0 NA Intergenic Intergenic 38426 ENSMUSG00000087273.1 ENSMUSG00000087273 ENSMUST00000139895 Gm13203 lincRNA Interval_88601 chr2 6526261 6526671 + 0 NA Intergenic Intergenic 46776 ENSMUSG00000102599.1 ENSMUSG00000102599 ENSMUST00000194293 Gm38386 TEC Interval_158770 chr8 86222962 86223224 + 0 NA Intergenic Intergenic -10761 ENSMUSG00000088192.1 ENSMUSG00000088192 ENSMUST00000157567 Gm23904 snoRNA Interval_33013 chr11 113666414 113667490 + 0 NA exon (ENSMUSG00000018661.17, exon 6 of 6) protein_coding-exon (ENSMUSG00000018661.17, exon 6 of 6) 8374 ENSMUSG00000018661.17 ENSMUSG00000018661 ENSMUST00000137878 Cog1 protein_coding Interval_7575 chr1 132280268 132282414 + 0 NA promoter-TSS (ENSMUSG00000101549.1) lincRNA-promoter-TSS (ENSMUSG00000101549.1) -930 ENSMUSG00000101549.1 ENSMUSG00000101549 ENSMUST00000185761 Gm29630 lincRNA Interval_129119 chr5 117509546 117510051 + 0 NA intron (ENSMUSG00000061578.8, intron 3 of 20) protein_coding-intron (ENSMUSG00000061578.8, intron 3 of 3) -10901 ENSMUSG00000107199.1 ENSMUSG00000107199 ENSMUST00000201553 Gm42550 TEC Interval_74333 chr17 49033120 49034109 + 0 NA intron (ENSMUSG00000040490.4, intron 1 of 2) protein_coding-intron (ENSMUSG00000040490.4, intron 1 of 2) 62819 ENSMUSG00000105424.1 ENSMUSG00000105424 ENSMUST00000200509 Gm44304 miRNA Interval_33044 chr11 113849881 113850254 + 0 NA intron (ENSMUSG00000041592.16, intron 18 of 18) protein_coding-intron (ENSMUSG00000041592.16, intron 18 of 44) -39644 ENSMUSG00000041592.16 ENSMUSG00000041592 ENSMUST00000144301 Sdk2 protein_coding Interval_74093 chr17 46549338 46549611 + 0 NA exon (ENSMUSG00000015605.6, exon 6 of 7) protein_coding-exon (ENSMUSG00000015605.6, exon 6 of 7) 2319 ENSMUSG00000015605.6 ENSMUSG00000015605 ENSMUST00000233797 Srf protein_coding Interval_111759 chr4 27696029 27696302 + 0 NA Intergenic Intergenic -4506 ENSMUSG00000095003.1 ENSMUSG00000095003 ENSMUST00000179794 Gm25173 snRNA Interval_10014 chr1 165062882 165063259 + 0 NA TTS (ENSMUSG00000102408.1) lincRNA-TTS (ENSMUSG00000102408.1) 28858 ENSMUSG00000102408.1 ENSMUSG00000102408 ENSMUST00000195635 4930568G15Rik lincRNA Interval_29650 chr11 85823073 85823639 + 0 NA intron (ENSMUSG00000059439.15, intron 2 of 2) protein_coding-intron (ENSMUSG00000059439.15, intron 24 of 24) 8853 ENSMUSG00000087013.7 ENSMUSG00000087013 ENSMUST00000128213 2610027K06Rik processed_transcript Interval_120328 chr4 147918143 147919071 + 0 NA intron (ENSMUSG00000019055.15, intron 3 of 6) protein_coding-intron (ENSMUSG00000019055.15, intron 14 of 18) 2489 ENSMUSG00000019055.15 ENSMUSG00000019055 ENSMUST00000132075 Plod1 protein_coding Interval_17151 chr10 72669815 72670019 + 0 NA TTS (ENSMUSG00000019923.14) protein_coding-TTS (ENSMUSG00000019923.14) 13673 ENSMUSG00000019923.14 ENSMUSG00000019923 ENSMUST00000219352 Zwint protein_coding Interval_85747 chr19 30252396 30252777 + 0 NA Intergenic Intergenic 8931 ENSMUSG00000093236.1 ENSMUSG00000093236 ENSMUST00000175495 Gm24108 miRNA Interval_171852 chr9 121777401 121779006 + 0 NA promoter-TSS (ENSMUSG00000111000.1) TEC-promoter-TSS (ENSMUSG00000111000.1) -57 ENSMUSG00000111000.1 ENSMUSG00000111000 ENSMUST00000215257 Gm47108 TEC Interval_144600 chr7 26785547 26786826 + 0 NA Intergenic Intergenic 19631 ENSMUSG00000066704.6 ENSMUSG00000066704 ENSMUST00000138018 Cyp2b19 protein_coding Interval_21315 chr10 127904861 127905239 + 0 NA intron (ENSMUSG00000040127.13, intron 2 of 2) protein_coding-intron (ENSMUSG00000040127.13, intron 3 of 3) 3004 ENSMUSG00000040127.13 ENSMUSG00000040127 ENSMUST00000149849 Sdr9c7 protein_coding Interval_172571 chrX 36873868 36875688 + 0 NA promoter-TSS (ENSMUSG00000006423.15) protein_coding-promoter-TSS (ENSMUSG00000006423.15) 447 ENSMUSG00000016308.12 ENSMUSG00000016308 ENSMUST00000201050 Ube2a protein_coding Interval_34780 chr12 11083133 11083605 + 0 NA Intergenic Intergenic -16227 ENSMUSG00000112298.1 ENSMUSG00000112298 ENSMUST00000220362 Gm48088 processed_pseudogene Interval_19512 chr10 101166459 101167388 + 0 NA Intergenic Intergenic -104698 ENSMUSG00000111906.1 ENSMUSG00000111906 ENSMUST00000219772 Gm19233 processed_pseudogene Interval_69187 chr16 91206256 91206586 + 0 NA Intergenic Intergenic 16505 ENSMUSG00000116882.1 ENSMUSG00000116882 ENSMUST00000231709 Gm49614 TEC Interval_171542 chr9 119102066 119103217 + 0 NA exon (ENSMUSG00000038060.15, exon 1 of 18) protein_coding-exon (ENSMUSG00000038060.15, exon 1 of 18) 163 ENSMUSG00000038060.15 ENSMUSG00000038060 ENSMUST00000148611 Dlec1 protein_coding Interval_18766 chr10 90199031 90199315 + 0 NA intron (ENSMUSG00000058589.14, intron 9 of 25) protein_coding-intron (ENSMUSG00000058589.14, intron 9 of 17) -64356 ENSMUSG00000112140.1 ENSMUSG00000112140 ENSMUST00000217774 Gm5780 processed_pseudogene Interval_32883 chr11 112798636 112799689 + 0 NA promoter-TSS (ENSMUSG00000075437.4) lincRNA-promoter-TSS (ENSMUSG00000075437.4) -154 ENSMUSG00000075437.4 ENSMUSG00000075437 ENSMUST00000127337 Gm11681 lincRNA Interval_135036 chr6 34886559 34886860 + 0 NA intron (ENSMUSG00000058486.11, intron 12 of 14) protein_coding-intron (ENSMUSG00000058486.11, intron 12 of 14) -9729 ENSMUSG00000046806.13 ENSMUSG00000046806 ENSMUST00000140458 Cyren protein_coding Interval_89713 chr2 24928533 24929493 + 0 NA promoter-TSS (ENSMUSG00000026972.15) protein_coding-promoter-TSS (ENSMUSG00000026972.15) -882 ENSMUSG00000026972.15 ENSMUSG00000026972 ENSMUST00000133396 Arrdc1 protein_coding Interval_44626 chr13 46793650 46794137 + 0 NA exon (ENSMUSG00000021375.11, exon 21 of 38) protein_coding-exon (ENSMUSG00000021375.11, exon 21 of 38) 15164 ENSMUSG00000021375.11 ENSMUSG00000021375 ENSMUST00000224923 Kif13a protein_coding Interval_49725 chr13 114269365 114269716 + 0 NA Intergenic Intergenic 14841 ENSMUSG00000114707.1 ENSMUSG00000114707 ENSMUST00000224003 Gm47558 TEC Interval_173640 chrX 101381860 101383843 + 0 NA promoter-TSS (ENSMUSG00000047797.14) protein_coding-promoter-TSS (ENSMUSG00000047797.14) -885 ENSMUSG00000047797.14 ENSMUSG00000047797 ENSMUST00000119190 Gjb1 protein_coding Interval_112349 chr4 40743874 40744068 + 0 NA exon (ENSMUSG00000028409.11, exon 8 of 8) protein_coding-exon (ENSMUSG00000028409.11, exon 8 of 8) 13860 ENSMUSG00000028409.11 ENSMUSG00000028409 ENSMUST00000137415 Smu1 protein_coding Interval_145474 chr7 35042346 35043011 + 0 NA promoter-TSS (ENSMUSG00000063931.14) protein_coding-promoter-TSS (ENSMUSG00000063931.14) 9859 ENSMUSG00000108486.1 ENSMUSG00000108486 ENSMUST00000205869 Gm44836 sense_intronic Interval_145886 chr7 41402317 41402570 + 0 NA intron (ENSMUSG00000066537.5, intron 5 of 5) protein_coding-intron (ENSMUSG00000092592.1, intron 7 of 7) 8745 ENSMUSG00000091864.1 ENSMUSG00000091864 ENSMUST00000170929 Gm17102 lincRNA Interval_169810 chr9 102059704 102059974 + 0 NA intron (ENSMUSG00000032537.15, intron 4 of 4) protein_coding-intron (ENSMUSG00000032537.15, intron 4 of 15) -3282 ENSMUSG00000104041.1 ENSMUSG00000104041 ENSMUST00000194763 Gm37562 TEC Interval_116566 chr4 115737314 115738181 + 0 NA promoter-TSS (ENSMUSG00000034210.14) protein_coding-promoter-TSS (ENSMUSG00000034210.14) -28721 ENSMUSG00000034210.14 ENSMUSG00000034210 ENSMUST00000141927 Efcab14 protein_coding Interval_26172 chr11 54879508 54879775 + 0 NA Intergenic Intergenic 13160 ENSMUSG00000020267.6 ENSMUSG00000020267 ENSMUST00000117710 Hint1 protein_coding Interval_115003 chr4 88355345 88355593 + 0 NA exon (ENSMUSG00000038368.16, exon 29 of 44) protein_coding-exon (ENSMUSG00000038368.16, exon 29 of 44) -44881 ENSMUSG00000038368.16 ENSMUSG00000038368 ENSMUST00000107147 Focad protein_coding Interval_152469 chr7 133181613 133181826 + 0 NA Intergenic Intergenic 53468 ENSMUSG00000109816.1 ENSMUSG00000109816 ENSMUST00000209850 4930483O08Rik lincRNA Interval_32545 chr11 108364145 108365731 + 0 NA intron (ENSMUSG00000000049.11, intron 1 of 2) protein_coding-intron (ENSMUSG00000000049.11, intron 1 of 2) -12939 ENSMUSG00000084916.1 ENSMUSG00000084916 ENSMUST00000137462 Gm11656 sense_intronic Interval_50218 chr14 10421736 10423759 + 0 NA intron (ENSMUSG00000060579.13, intron 3 of 4) protein_coding-intron (ENSMUSG00000060579.13, intron 4 of 9) -1150 ENSMUSG00000060579.13 ENSMUSG00000060579 ENSMUST00000160956 Fhit protein_coding Interval_96609 chr2 126508873 126509059 + 0 NA Intergenic Intergenic -8977 ENSMUSG00000060131.11 ENSMUSG00000060131 ENSMUST00000129187 Atp8b4 protein_coding Interval_100721 chr2 172024672 172025579 + 0 NA Intergenic Intergenic 18341 ENSMUSG00000067578.3 ENSMUSG00000067578 ENSMUST00000087950 Cbln4 protein_coding Interval_163434 chr9 21419546 21420062 + 0 NA TTS (ENSMUSG00000002825.8) protein_coding-TTS (ENSMUSG00000002825.8) -5164 ENSMUSG00000033335.17 ENSMUSG00000033335 ENSMUST00000174243 Dnm2 protein_coding Interval_57617 chr15 12857746 12858860 + 0 NA intron (ENSMUSG00000022191.16, intron 10 of 34) protein_coding-intron (ENSMUSG00000022191.16, intron 10 of 34) 16207 ENSMUSG00000104911.1 ENSMUSG00000104911 ENSMUST00000198820 Gm47288 miRNA Interval_54137 chr14 65618473 65618771 + 0 NA intron (ENSMUSG00000061356.13, intron 8 of 18) protein_coding-intron (ENSMUSG00000061356.13, intron 8 of 18) 20076 ENSMUSG00000061356.13 ENSMUSG00000061356 ENSMUST00000079469 Nuggc protein_coding Interval_150467 chr7 110920266 110921497 + 0 NA intron (ENSMUSG00000005611.15, intron 2 of 2) protein_coding-intron (ENSMUSG00000005611.15, intron 10 of 20) 15896 ENSMUSG00000087160.1 ENSMUSG00000087160 ENSMUST00000126011 Gm16336 antisense Interval_60451 chr15 73833131 73833718 + 0 NA intron (ENSMUSG00000072487.11, intron 1 of 3) protein_coding-intron (ENSMUSG00000072487.11, intron 1 of 10) -1137 ENSMUSG00000086361.1 ENSMUSG00000086361 ENSMUST00000154520 Gm6569 protein_coding Interval_20439 chr10 117637201 117637549 + 0 NA intron (ENSMUSG00000020183.11, intron 2 of 3) protein_coding-intron (ENSMUSG00000020183.11, intron 2 of 8) 22970 ENSMUSG00000112476.1 ENSMUSG00000112476 ENSMUST00000217828 Gm32365 lincRNA Interval_23236 chr11 20756126 20756666 + 0 NA Intergenic Intergenic -14941 ENSMUSG00000049659.15 ENSMUSG00000049659 ENSMUST00000134897 Aftph protein_coding Interval_52830 chr14 50930259 50931829 + 0 NA promoter-TSS (ENSMUSG00000035953.14) protein_coding-promoter-TSS (ENSMUSG00000035953.14) -211 ENSMUSG00000035953.14 ENSMUSG00000035953 ENSMUST00000163043 Pip4p1 protein_coding Interval_28009 chr11 72152787 72153361 + 0 NA TTS (ENSMUSG00000020807.15) protein_coding-TTS (ENSMUSG00000020807.15) -17296 ENSMUSG00000040543.16 ENSMUSG00000040543 ENSMUST00000142471 Pitpnm3 protein_coding Interval_87447 chr19 51345458 51346345 + 0 NA Intergenic Intergenic -106105 ENSMUSG00000065143.1 ENSMUSG00000065143 ENSMUST00000083209 Gm25644 snRNA Interval_56855 chr14 122453079 122454168 + 0 NA Intergenic Intergenic 6398 ENSMUSG00000041703.7 ENSMUSG00000041703 ENSMUST00000143084 Zic5 protein_coding Interval_24543 chr11 34227353 34227648 + 0 NA exon (ENSMUSG00000020143.15, exon 52 of 52) protein_coding-exon (ENSMUSG00000020143.15, exon 52 of 52) -19411 ENSMUSG00000047861.2 ENSMUSG00000047861 ENSMUST00000060271 Foxi1 protein_coding Interval_58177 chr15 30368301 30368962 + 0 NA intron (ENSMUSG00000022240.10, intron 2 of 2) protein_coding-intron (ENSMUSG00000022240.10, intron 2 of 22) -60213 ENSMUSG00000115073.1 ENSMUSG00000115073 ENSMUST00000226263 Gm49283 TEC Interval_93847 chr2 77440696 77441814 + 0 NA intron (ENSMUSG00000027016.17, intron 4 of 4) protein_coding-intron (ENSMUSG00000027016.17, intron 4 of 7) -21414 ENSMUSG00000085845.7 ENSMUSG00000085845 ENSMUST00000126572 Gm13944 antisense Interval_67592 chr16 51754420 51754700 + 0 NA Intergenic Intergenic 232727 ENSMUSG00000116725.1 ENSMUSG00000116725 ENSMUST00000232050 Gm29686 processed_transcript Interval_86698 chr19 42735384 42736057 + 0 NA intron (ENSMUSG00000060224.4, intron 9 of 15) protein_coding-intron (ENSMUSG00000060224.4, intron 9 of 15) -10051 ENSMUSG00000118354.1 ENSMUSG00000118354 ENSMUST00000236540 Gm19437 antisense Interval_133734 chr6 10705273 10706314 + 0 NA Intergenic Intergenic 69221 ENSMUSG00000108222.1 ENSMUSG00000108222 ENSMUST00000203205 Gm2691 processed_pseudogene Interval_28597 chr11 77054164 77054398 + 0 NA TTS (ENSMUSG00000037958.13) protein_coding-TTS (ENSMUSG00000037958.13) 1334 ENSMUSG00000077639.1 ENSMUSG00000077639 ENSMUST00000104451 Gm22772 snoRNA Interval_108189 chr3 122342424 122342643 + 0 NA intron (ENSMUSG00000028121.8, intron 6 of 6) protein_coding-intron (ENSMUSG00000028121.8, intron 6 of 6) -48813 ENSMUSG00000057359.7 ENSMUSG00000057359 ENSMUST00000199060 Gm17494 processed_transcript Interval_42188 chr13 9690626 9691109 + 0 NA promoter-TSS (ENSMUSG00000021156.17) protein_coding-promoter-TSS (ENSMUSG00000021156.17) 6574 ENSMUSG00000114138.1 ENSMUSG00000114138 ENSMUST00000222421 Gm36423 antisense Interval_108966 chr3 133645791 133646832 + 0 NA intron (ENSMUSG00000105952.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000105952.1, intron 1 of 1) -11553 ENSMUSG00000102530.1 ENSMUSG00000102530 ENSMUST00000193574 Gm37228 TEC Interval_87035 chr19 45727054 45727882 + 0 NA Intergenic Intergenic 15447 ENSMUSG00000025219.13 ENSMUSG00000025219 ENSMUST00000111925 Fgf8 protein_coding Interval_134626 chr6 30028195 30029090 + 0 NA Intergenic Intergenic 40254 ENSMUSG00000095989.1 ENSMUSG00000095989 ENSMUST00000178068 Gm23049 miRNA Interval_75307 chr17 65807156 65807569 + 0 NA intron (ENSMUSG00000061950.17, intron 3 of 3) protein_coding-intron (ENSMUSG00000061950.17, intron 4 of 19) -21586 ENSMUSG00000061950.17 ENSMUSG00000061950 ENSMUST00000162703 Ppp4r1 protein_coding Interval_54283 chr14 67149788 67151469 + 0 NA Intergenic Intergenic -18960 ENSMUSG00000114697.1 ENSMUSG00000114697 ENSMUST00000225163 Gm30806 lincRNA Interval_97558 chr2 139817476 139817971 + 0 NA Intergenic Intergenic -45574 ENSMUSG00000084207.1 ENSMUSG00000084207 ENSMUST00000120773 Gm14070 processed_pseudogene Interval_71575 chr17 24639082 24639604 + 0 NA TTS (ENSMUSG00000002504.15) protein_coding-TTS (ENSMUSG00000002504.15) 1167 ENSMUSG00000041429.3 ENSMUSG00000041429 ENSMUST00000234888 Nthl1 protein_coding Interval_10013 chr1 165060923 165061507 + 0 NA Intergenic Intergenic 30713 ENSMUSG00000102408.1 ENSMUSG00000102408 ENSMUST00000195635 4930568G15Rik lincRNA Interval_115110 chr4 90151331 90151749 + 0 NA Intergenic Intergenic -33987 ENSMUSG00000085690.1 ENSMUSG00000085690 ENSMUST00000145751 Gm12629 lincRNA Interval_16407 chr10 62773001 62773203 + 0 NA intron (ENSMUSG00000020074.7, intron 8 of 24) protein_coding-intron (ENSMUSG00000020074.7, intron 8 of 24) -7462 ENSMUSG00000080469.1 ENSMUSG00000080469 ENSMUST00000116819 Snord98 snoRNA Interval_104611 chr3 68800942 68801282 + 0 NA Intergenic Intergenic 39617 ENSMUSG00000102936.1 ENSMUSG00000102936 ENSMUST00000191767 Gm35584 lincRNA Interval_157159 chr8 66603414 66604847 + 0 NA Intergenic Intergenic -15122 ENSMUSG00000085082.1 ENSMUSG00000085082 ENSMUST00000128324 Gm16330 processed_pseudogene Interval_58732 chr15 37442292 37442487 + 0 NA intron (ENSMUSG00000115157.1, intron 7 of 7) protein_coding-intron (ENSMUSG00000051359.15, intron 4 of 6) -10241 ENSMUSG00000086992.7 ENSMUSG00000086992 ENSMUST00000128804 Gm15941 antisense Interval_145398 chr7 34469998 34470912 + 0 NA intron (ENSMUSG00000085124.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000085124.1, intron 1 of 2) 25610 ENSMUSG00000081863.1 ENSMUSG00000081863 ENSMUST00000122458 Gm12780 processed_pseudogene Interval_113490 chr4 55322352 55322675 + 0 NA Intergenic Intergenic -22668 ENSMUSG00000077403.2 ENSMUSG00000077403 ENSMUST00000104215 Gm25419 snoRNA Interval_13366 chr10 17236307 17236567 + 0 NA Intergenic Intergenic 85174 ENSMUSG00000112478.1 ENSMUSG00000112478 ENSMUST00000219259 Gm47761 lincRNA Interval_125321 chr5 66187427 66187645 + 0 NA intron (ENSMUSG00000107014.1, intron 1 of 2) antisense-intron (ENSMUSG00000107014.1, intron 1 of 2) 3800 ENSMUSG00000107014.1 ENSMUSG00000107014 ENSMUST00000201903 1700126H18Rik antisense Interval_111129 chr4 12538809 12539187 + 0 NA Intergenic Intergenic -58390 ENSMUSG00000104211.1 ENSMUSG00000104211 ENSMUST00000194728 Gm37985 TEC Interval_115368 chr4 98235302 98236403 + 0 NA promoter-TSS (ENSMUSG00000082388.1) processed_pseudogene-promoter-TSS (ENSMUSG00000082388.1) -562 ENSMUSG00000082388.1 ENSMUSG00000082388 ENSMUST00000121092 Gm12692 processed_pseudogene Interval_33092 chr11 114350444 114350674 + 0 NA Intergenic Intergenic -6570 ENSMUSG00000081548.1 ENSMUSG00000081548 ENSMUST00000122121 Gm11692 processed_pseudogene Interval_133720 chr6 9693416 9694091 + 0 NA Intergenic Intergenic 479101 ENSMUSG00000107459.1 ENSMUSG00000107459 ENSMUST00000203122 Gm5110 processed_pseudogene Interval_96204 chr2 120527329 120528007 + 0 NA TTS (ENSMUSG00000027288.16) protein_coding-TTS (ENSMUSG00000027288.16) 12192 ENSMUSG00000027288.16 ENSMUSG00000027288 ENSMUST00000147353 Zfp106 protein_coding Interval_21017 chr10 123342738 123343001 + 0 NA intron (ENSMUSG00000044071.9, intron 1 of 4) protein_coding-intron (ENSMUSG00000044071.9, intron 1 of 5) 78793 ENSMUSG00000044071.9 ENSMUSG00000044071 ENSMUST00000219723 Tafa2 protein_coding Interval_94825 chr2 95413677 95414756 + 0 NA Intergenic Intergenic 19974 ENSMUSG00000084906.1 ENSMUSG00000084906 ENSMUST00000148637 Gm13794 lincRNA Interval_87495 chr19 53044117 53044561 + 0 NA intron (ENSMUSG00000099988.7, intron 1 of 2) processed_transcript-intron (ENSMUSG00000099988.7, intron 1 of 2) -31904 ENSMUSG00000099988.7 ENSMUSG00000099988 ENSMUST00000236249 1700054A03Rik processed_transcript Interval_84468 chr19 11349823 11350248 + 0 NA Intergenic Intergenic -12243 ENSMUSG00000100392.1 ENSMUSG00000100392 ENSMUST00000185737 Gm28935 lincRNA Interval_9084 chr1 153489238 153489672 + 0 NA Intergenic Intergenic -11316 ENSMUSG00000042699.11 ENSMUSG00000042699 ENSMUST00000189425 Dhx9 protein_coding Interval_151883 chr7 127290084 127290391 + 0 NA TTS (ENSMUSG00000108760.1) lincRNA-TTS (ENSMUSG00000108760.1) 2022 ENSMUSG00000108760.1 ENSMUSG00000108760 ENSMUST00000206231 Gm31897 lincRNA Interval_81389 chr18 60317452 60317788 + 0 NA intron (ENSMUSG00000118361.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000118361.1, intron 1 of 2) 24240 ENSMUSG00000090942.1 ENSMUSG00000090942 ENSMUST00000171297 F830016B08Rik protein_coding Interval_61020 chr15 78815431 78816643 + 0 NA Intergenic Intergenic -4773 ENSMUSG00000116499.1 ENSMUSG00000116499 ENSMUST00000230007 Gm7318 processed_pseudogene Interval_135915 chr6 48645306 48646227 + 0 NA Intergenic Intergenic -1618 ENSMUSG00000064262.7 ENSMUSG00000064262 ENSMUST00000203509 Gimap8 protein_coding Interval_96264 chr2 121066613 121066954 + 0 NA intron (ENSMUSG00000053675.8, intron 6 of 12) protein_coding-intron (ENSMUSG00000053675.8, intron 6 of 12) 16984 ENSMUSG00000081313.1 ENSMUSG00000081313 ENSMUST00000119778 Gm14213 processed_pseudogene Interval_95455 chr2 109722668 109724076 + 0 NA intron (ENSMUSG00000048482.14, intron 2 of 2) protein_coding-intron (ENSMUSG00000048482.14, intron 1 of 1) 30345 ENSMUSG00000048482.14 ENSMUSG00000048482 ENSMUST00000111042 Bdnf protein_coding Interval_173421 chrX 93149446 93149726 + 0 NA Intergenic Intergenic -6568 ENSMUSG00000095110.1 ENSMUSG00000095110 ENSMUST00000088134 1700003E24Rik lincRNA Interval_138036 chr6 84493190 84493640 + 0 NA Intergenic Intergenic -42461 ENSMUSG00000107926.1 ENSMUSG00000107926 ENSMUST00000204799 4930504D19Rik lincRNA Interval_73309 chr17 36120536 36122258 + 0 NA promoter-TSS (ENSMUSG00000079491.9) polymorphic_pseudogene-promoter-TSS (ENSMUSG00000079491.9) 38 ENSMUSG00000079491.9 ENSMUSG00000079491 ENSMUST00000174382 H2-T10 polymorphic_pseudogene Interval_174048 chrX 132980896 132981690 + 0 NA Intergenic Intergenic 49698 ENSMUSG00000083205.1 ENSMUSG00000083205 ENSMUST00000117111 Gm7821 processed_pseudogene Interval_49741 chr13 114387339 114388624 + 0 NA promoter-TSS (ENSMUSG00000021764.8) protein_coding-promoter-TSS (ENSMUSG00000021764.8) 69 ENSMUSG00000021764.8 ENSMUSG00000021764 ENSMUST00000225978 Ndufs4 protein_coding Interval_74458 chr17 50797695 50798037 + 0 NA exon (ENSMUSG00000023923.10, exon 17 of 17) protein_coding-exon (ENSMUSG00000023923.10, exon 17 of 17) 99178 ENSMUSG00000044645.8 ENSMUSG00000044645 ENSMUST00000061681 Gm7334 processed_pseudogene Interval_80774 chr18 46978304 46978652 + 0 NA intron (ENSMUSG00000042705.9, intron 4 of 5) protein_coding-intron (ENSMUSG00000042705.9, intron 4 of 6) 7003 ENSMUSG00000087857.1 ENSMUSG00000087857 ENSMUST00000157232 Gm22791 snoRNA Interval_144723 chr7 27783796 27784239 + 0 NA Intergenic Intergenic 13512 ENSMUSG00000109143.1 ENSMUSG00000109143 ENSMUST00000208942 Gm10046 transcribed_unprocessed_pseudogene Interval_78504 chr18 13786420 13786705 + 0 NA intron (ENSMUSG00000024420.9, intron 2 of 5) protein_coding-intron (ENSMUSG00000024420.9, intron 5 of 7) 89764 ENSMUSG00000024420.9 ENSMUSG00000024420 ENSMUST00000234025 Zfp521 protein_coding Interval_26314 chr11 56064698 56064927 + 0 NA intron (ENSMUSG00000086020.1, intron 2 of 4) antisense-intron (ENSMUSG00000086020.1, intron 2 of 4) -23802 ENSMUSG00000037393.2 ENSMUSG00000037393 ENSMUST00000037682 Nmur2 protein_coding Interval_109614 chr3 145173666 145173958 + 0 NA Intergenic Intergenic 24794 ENSMUSG00000028256.16 ENSMUSG00000028256 ENSMUST00000200353 Odf2l protein_coding Interval_71341 chr17 22417366 22418306 + 0 NA Intergenic Intergenic -33287 ENSMUSG00000071266.13 ENSMUSG00000071266 ENSMUST00000167740 Zfp946 protein_coding Interval_35585 chr12 25068389 25069498 + 0 NA Intergenic Intergenic 4251 ENSMUSG00000114148.1 ENSMUSG00000114148 ENSMUST00000220747 Gm47701 lincRNA Interval_115918 chr4 106281896 106282256 + 0 NA intron (ENSMUSG00000086249.1, intron 4 of 4) processed_transcript-intron (ENSMUSG00000086249.1, intron 4 of 4) -9193 ENSMUSG00000087051.1 ENSMUSG00000087051 ENSMUST00000125277 Gm12730 lincRNA Interval_63881 chr16 4222860 4223166 + 0 NA Intergenic Intergenic -7288 ENSMUSG00000089645.3 ENSMUSG00000089645 ENSMUST00000161633 Gm5766 transcribed_processed_pseudogene Interval_6140 chr1 97929864 97930051 + 0 NA intron (ENSMUSG00000026335.16, intron 4 of 23) protein_coding-intron (ENSMUSG00000026335.16, intron 5 of 25) -6443 ENSMUSG00000089169.1 ENSMUSG00000089169 ENSMUST00000158544 Gm25413 misc_RNA Interval_137347 chr6 71582840 71583116 + 0 NA TTS (ENSMUSG00000053119.11) protein_coding-TTS (ENSMUSG00000053119.11) -38864 ENSMUSG00000107406.1 ENSMUSG00000107406 ENSMUST00000205011 1700040L08Rik antisense Interval_112786 chr4 44984976 44985234 + 0 NA intron (ENSMUSG00000035637.14, intron 4 of 7) protein_coding-intron (ENSMUSG00000035637.14, intron 4 of 8) 3644 ENSMUSG00000035637.14 ENSMUSG00000035637 ENSMUST00000143589 Grhpr protein_coding Interval_28807 chr11 78447277 78448770 + 0 NA Intergenic Intergenic 3916 ENSMUSG00000086380.1 ENSMUSG00000086380 ENSMUST00000135030 Gm11195 lincRNA Interval_62664 chr15 96100518 96101044 + 0 NA Intergenic Intergenic -45956 ENSMUSG00000078925.11 ENSMUSG00000078925 ENSMUST00000140253 D030018L15Rik lincRNA Interval_18743 chr10 89846001 89846754 + 0 NA Intergenic Intergenic -24931 ENSMUSG00000093967.1 ENSMUSG00000093967 ENSMUST00000179942 Gm26180 snRNA Interval_143212 chr7 4521313 4521849 + 0 NA exon (ENSMUSG00000035458.15, exon 3 of 3) protein_coding-exon (ENSMUSG00000035458.15, exon 3 of 3) 846 ENSMUSG00000035458.15 ENSMUSG00000035458 ENSMUST00000150166 Tnni3 protein_coding Interval_126298 chr5 86249853 86250080 + 0 NA intron (ENSMUSG00000061184.8, intron 5 of 9) protein_coding-intron (ENSMUSG00000061184.8, intron 5 of 9) -13005 ENSMUSG00000094833.1 ENSMUSG00000094833 ENSMUST00000180191 Gm25473 snRNA Interval_44604 chr13 46659272 46659483 + 0 NA Intergenic Intergenic -11814 ENSMUSG00000069237.8 ENSMUSG00000069237 ENSMUST00000150376 Fam8a1 protein_coding Interval_154882 chr8 24603698 24604385 + 0 NA intron (ENSMUSG00000031552.13, intron 1 of 1) protein_coding-intron (ENSMUSG00000031552.13, intron 19 of 19) -8375 ENSMUSG00000031551.12 ENSMUSG00000031551 ENSMUST00000033956 Ido1 protein_coding Interval_34934 chr12 13955353 13956493 + 0 NA Intergenic Intergenic -57161 ENSMUSG00000113522.1 ENSMUSG00000113522 ENSMUST00000222663 Gm48479 lincRNA Interval_95752 chr2 115781287 115781552 + 0 NA Intergenic Intergenic 87448 ENSMUSG00000027210.20 ENSMUSG00000027210 ENSMUST00000138526 Meis2 protein_coding Interval_141589 chr6 129853296 129853850 + 0 NA intron (ENSMUSG00000014543.14, intron 6 of 7) protein_coding-intron (ENSMUSG00000014543.14, intron 6 of 7) 4880 ENSMUSG00000108235.1 ENSMUSG00000108235 ENSMUST00000203079 Gm44248 processed_pseudogene Interval_31395 chr11 100420177 100421992 + 0 NA intron (ENSMUSG00000001555.10, intron 3 of 7) protein_coding-intron (ENSMUSG00000001555.10, intron 3 of 9) 660 ENSMUSG00000001555.10 ENSMUSG00000001555 ENSMUST00000125616 Fkbp10 protein_coding Interval_72983 chr17 33955291 33956343 + 0 NA promoter-TSS (ENSMUSG00000008668.15) protein_coding-promoter-TSS (ENSMUSG00000008668.15) -154 ENSMUSG00000008668.15 ENSMUSG00000008668 ENSMUST00000172550 Rps18 protein_coding Interval_152431 chr7 133003311 133003945 + 0 NA intron (ENSMUSG00000030970.16, intron 2 of 9) protein_coding-intron (ENSMUSG00000030970.16, intron 2 of 9) -20076 ENSMUSG00000085663.1 ENSMUSG00000085663 ENSMUST00000131085 Gm15718 antisense Interval_115435 chr4 98916186 98917562 + 0 NA Intergenic Intergenic -7090 ENSMUSG00000028560.11 ENSMUSG00000028560 ENSMUST00000125104 Usp1 protein_coding Interval_33602 chr11 117438085 117438703 + 0 NA exon (ENSMUSG00000085336.1, exon 5 of 5) processed_transcript-exon (ENSMUSG00000085336.1, exon 5 of 5) 12216 ENSMUSG00000085336.1 ENSMUSG00000085336 ENSMUST00000151381 Gm11732 processed_transcript Interval_71811 chr17 26243478 26244627 + 0 NA promoter-TSS (ENSMUSG00000024187.15) protein_coding-promoter-TSS (ENSMUSG00000024187.15) 162 ENSMUSG00000024187.15 ENSMUSG00000024187 ENSMUST00000151293 Fam234a protein_coding Interval_157246 chr8 68410992 68411397 + 0 NA intron (ENSMUSG00000036356.15, intron 5 of 6) protein_coding-intron (ENSMUSG00000036356.15, intron 4 of 9) 42728 ENSMUSG00000085197.7 ENSMUSG00000085197 ENSMUST00000139265 1700125H03Rik antisense Interval_63554 chr15 102013620 102014262 + 0 NA Intergenic Intergenic -9459 ENSMUSG00000049382.10 ENSMUSG00000049382 ENSMUST00000023952 Krt8 protein_coding Interval_165471 chr9 48501730 48501937 + 0 NA Intergenic Intergenic 5227 ENSMUSG00000080401.1 ENSMUSG00000080401 ENSMUST00000116751 Gm23653 miRNA Interval_160440 chr8 109523575 109523880 + 0 NA intron (ENSMUSG00000031727.8, intron 6 of 19) protein_coding-intron (ENSMUSG00000031727.8, intron 7 of 20) 28397 ENSMUSG00000037993.8 ENSMUSG00000037993 ENSMUST00000212667 Dhx38 protein_coding Interval_27305 chr11 65806552 65807704 + 0 NA promoter-TSS (ENSMUSG00000018347.16) protein_coding-promoter-TSS (ENSMUSG00000018347.16) -47 ENSMUSG00000018347.16 ENSMUSG00000018347 ENSMUST00000018491 Zkscan6 protein_coding Interval_36507 chr12 47129465 47130378 + 0 NA Intergenic Intergenic -35121 ENSMUSG00000104308.1 ENSMUSG00000104308 ENSMUST00000195244 Gm36971 TEC Interval_97282 chr2 132945049 132946338 + 0 NA promoter-TSS (ENSMUSG00000027356.8) protein_coding-promoter-TSS (ENSMUSG00000027356.8) -3596 ENSMUSG00000027356.8 ENSMUSG00000027356 ENSMUST00000143981 Fermt1 protein_coding Interval_62839 chr15 97350060 97350968 + 0 NA intron (ENSMUSG00000044250.8, intron 3 of 5) protein_coding-intron (ENSMUSG00000044250.8, intron 3 of 5) -10688 ENSMUSG00000044250.8 ENSMUSG00000044250 ENSMUST00000226495 Pced1b protein_coding Interval_24110 chr11 30413772 30414478 + 0 NA Intergenic Intergenic 57702 ENSMUSG00000040919.13 ENSMUSG00000040919 ENSMUST00000152718 4930505A04Rik protein_coding Interval_138532 chr6 88971672 88972136 + 0 NA intron (ENSMUSG00000055403.13, intron 1 of 2) lincRNA-intron (ENSMUSG00000055403.13, intron 1 of 2) 21221 ENSMUSG00000055403.13 ENSMUSG00000055403 ENSMUST00000153981 4933427D06Rik lincRNA Interval_112844 chr4 45480372 45480878 + 0 NA intron (ENSMUSG00000044813.15, intron 2 of 2) protein_coding-intron (ENSMUSG00000044813.15, intron 2 of 5) 2177 ENSMUSG00000044813.15 ENSMUSG00000044813 ENSMUST00000147448 Shb protein_coding Interval_111407 chr4 21007520 21008342 + 0 NA Intergenic Intergenic 3009 ENSMUSG00000083315.1 ENSMUSG00000083315 ENSMUST00000122429 Gm11871 processed_pseudogene Interval_78197 chr18 10064077 10064298 + 0 NA TTS (ENSMUSG00000024290.9) protein_coding-TTS (ENSMUSG00000024290.9) -19082 ENSMUSG00000047879.17 ENSMUSG00000047879 ENSMUST00000150321 Usp14 protein_coding Interval_25507 chr11 49352783 49352997 + 0 NA Intergenic Intergenic 17702 ENSMUSG00000045421.2 ENSMUSG00000045421 ENSMUST00000062719 Olfr1390 protein_coding Interval_135656 chr6 42371903 42373550 + 0 NA intron (ENSMUSG00000029859.6, intron 1 of 15) protein_coding-intron (ENSMUSG00000029859.6, intron 1 of 17) 542 ENSMUSG00000029859.6 ENSMUSG00000029859 ENSMUST00000204238 Epha1 protein_coding Interval_108446 chr3 127280026 127280606 + 0 NA intron (ENSMUSG00000032826.19, intron 2 of 15) protein_coding-intron (ENSMUSG00000032826.19, intron 2 of 14) 5243 ENSMUSG00000105568.1 ENSMUSG00000105568 ENSMUST00000199228 Gm42971 TEC Interval_167715 chr9 72253003 72253264 + 0 NA Intergenic Intergenic 4006 ENSMUSG00000089530.1 ENSMUSG00000089530 ENSMUST00000158905 Gm25163 snRNA Interval_168372 chr9 79767353 79767938 + 0 NA Intergenic Intergenic -8394 ENSMUSG00000032330.7 ENSMUSG00000032330 ENSMUST00000215452 Cox7a2 protein_coding Interval_112328 chr4 40528631 40529404 + 0 NA Intergenic Intergenic -3469 ENSMUSG00000086355.1 ENSMUSG00000086355 ENSMUST00000146043 4933428C19Rik lincRNA Interval_70377 chr17 9404035 9404262 + 0 NA Intergenic Intergenic -17912 ENSMUSG00000072968.4 ENSMUSG00000072968 ENSMUST00000076982 Gm17728 protein_coding Interval_100560 chr2 170130321 170131686 + 0 NA intron (ENSMUSG00000052056.14, intron 2 of 2) protein_coding-intron (ENSMUSG00000052056.14, intron 1 of 5) 17100 ENSMUSG00000052056.14 ENSMUSG00000052056 ENSMUST00000149318 Zfp217 protein_coding Interval_15026 chr10 42023570 42024940 + 0 NA Intergenic Intergenic -5875 ENSMUSG00000071324.11 ENSMUSG00000071324 ENSMUST00000161081 Armc2 protein_coding Interval_122642 chr5 24413667 24414080 + 0 NA exon (ENSMUSG00000038276.12, exon 1 of 10) protein_coding-exon (ENSMUSG00000038276.12, exon 1 of 10) -2704 ENSMUSG00000038276.12 ENSMUSG00000038276 ENSMUST00000198442 Asic3 protein_coding Interval_37798 chr12 72047476 72047725 + 0 NA Intergenic Intergenic 1659 ENSMUSG00000114155.1 ENSMUSG00000114155 ENSMUST00000221336 Gm7986 processed_pseudogene Interval_136438 chr6 54474890 54476715 + 0 NA intron (ENSMUSG00000086040.8, intron 1 of 3) protein_coding-intron (ENSMUSG00000086040.8, intron 2 of 7) -2632 ENSMUSG00000108081.1 ENSMUSG00000108081 ENSMUST00000203985 Gm44026 antisense Interval_61248 chr15 80215913 80216347 + 0 NA TTS (ENSMUSG00000042428.6) protein_coding-TTS (ENSMUSG00000042428.6) 12284 ENSMUSG00000115962.1 ENSMUSG00000115962 ENSMUST00000231034 4930588D02Rik TEC Interval_142247 chr6 139877760 139877947 + 0 NA intron (ENSMUSG00000030228.18, intron 13 of 20) protein_coding-intron (ENSMUSG00000030228.18, intron 8 of 15) 47466 ENSMUSG00000107870.1 ENSMUSG00000107870 ENSMUST00000204549 Gm43940 TEC Interval_31967 chr11 104221641 104222245 + 0 NA Intergenic Intergenic -9636 ENSMUSG00000018411.17 ENSMUSG00000018411 ENSMUST00000126820 Mapt protein_coding Interval_165124 chr9 44690777 44691720 + 0 NA intron (ENSMUSG00000048537.16, intron 14 of 15) protein_coding-intron (ENSMUSG00000048537.16, intron 20 of 21) 7952 ENSMUSG00000032098.13 ENSMUSG00000032098 ENSMUST00000150822 Treh protein_coding Interval_101112 chr2 178057803 178058854 + 0 NA Intergenic Intergenic 20097 ENSMUSG00000078861.8 ENSMUSG00000078861 ENSMUST00000108923 Zfp931 protein_coding Interval_86892 chr19 44671705 44672760 + 0 NA Intergenic Intergenic 23228 ENSMUSG00000097683.2 ENSMUSG00000097683 ENSMUST00000181365 Gm26644 lincRNA Interval_62151 chr15 88267158 88267572 + 0 NA TTS (ENSMUSG00000115880.1) lincRNA-TTS (ENSMUSG00000115880.1) -47509 ENSMUSG00000116331.1 ENSMUSG00000116331 ENSMUST00000230919 B230214G05Rik lincRNA Interval_8550 chr1 141558609 141558988 + 0 NA Intergenic Intergenic 12592 ENSMUSG00000103858.1 ENSMUSG00000103858 ENSMUST00000191749 Gm37604 TEC Interval_73091 chr17 34733349 34733578 + 0 NA TTS (ENSMUSG00000073418.4) protein_coding-TTS (ENSMUSG00000073418.4) -4198 ENSMUSG00000073418.4 ENSMUSG00000073418 ENSMUST00000173057 C4b protein_coding Interval_174426 chrX 152175224 152175659 + 0 NA intron (ENSMUSG00000041115.16, intron 2 of 14) protein_coding-intron (ENSMUSG00000041115.16, intron 2 of 13) 31173 ENSMUSG00000041115.16 ENSMUSG00000041115 ENSMUST00000096275 Iqsec2 protein_coding Interval_91423 chr2 38688559 38689558 + 0 NA TTS (ENSMUSG00000083722.2) transcribed_unitary_pseudogene-TTS (ENSMUSG00000083722.2) 16830 ENSMUSG00000083722.2 ENSMUSG00000083722 ENSMUST00000152645 Adgrd2-ps transcribed_unitary_pseudogene Interval_140338 chr6 116673408 116674466 + 0 NA promoter-TSS (ENSMUSG00000042129.8) protein_coding-promoter-TSS (ENSMUSG00000042129.8) -139 ENSMUSG00000042129.8 ENSMUSG00000042129 ENSMUST00000204576 Rassf4 protein_coding Interval_111120 chr4 12325599 12326401 + 0 NA Intergenic Intergenic 54601 ENSMUSG00000085909.1 ENSMUSG00000085909 ENSMUST00000155156 Gm11846 lincRNA Interval_131066 chr5 134891349 134891963 + 0 NA Intergenic Intergenic 15077 ENSMUSG00000040576.8 ENSMUSG00000040576 ENSMUST00000047305 Tmem270 protein_coding Interval_156572 chr8 52345361 52345815 + 0 NA Intergenic Intergenic -8483 ENSMUSG00000064682.1 ENSMUSG00000064682 ENSMUST00000082748 Gm25813 snRNA Interval_4413 chr1 74010757 74010979 + 0 NA intron (ENSMUSG00000055322.16, intron 4 of 32) protein_coding-intron (ENSMUSG00000055322.16, intron 4 of 34) 87808 ENSMUSG00000055322.16 ENSMUSG00000055322 ENSMUST00000190599 Tns1 protein_coding Interval_52891 chr14 51876023 51876709 + 0 NA Intergenic Intergenic -8552 ENSMUSG00000004561.14 ENSMUSG00000004561 ENSMUST00000077846 Mettl17 protein_coding Interval_151591 chr7 124602094 124602305 + 0 NA Intergenic Intergenic 106736 ENSMUSG00000086254.1 ENSMUSG00000086254 ENSMUST00000130240 3100003L05Rik lincRNA Interval_105812 chr3 89458792 89459554 + 0 NA promoter-TSS (ENSMUSG00000027952.16) protein_coding-promoter-TSS (ENSMUSG00000027952.16) 4632 ENSMUSG00000027952.16 ENSMUSG00000027952 ENSMUST00000184515 Pmvk protein_coding Interval_112906 chr4 45929807 45930240 + 0 NA intron (ENSMUSG00000035539.14, intron 28 of 37) protein_coding-intron (ENSMUSG00000035539.14, intron 24 of 33) 39720 ENSMUSG00000035539.14 ENSMUSG00000035539 ENSMUST00000151024 Ccdc180 protein_coding Interval_156744 chr8 57796519 57796801 + 0 NA promoter-TSS (ENSMUSG00000096914.3) protein_coding-promoter-TSS (ENSMUSG00000096914.3) 46398 ENSMUSG00000096914.3 ENSMUSG00000096914 ENSMUST00000203398 Galntl6 protein_coding Interval_2299 chr1 37899898 37900869 + 0 NA Intergenic Intergenic 6448 ENSMUSG00000026087.11 ENSMUSG00000026087 ENSMUST00000162513 Mrpl30 protein_coding Interval_129665 chr5 121613015 121613389 + 0 NA intron (ENSMUSG00000042647.13, intron 2 of 6) protein_coding-intron (ENSMUSG00000042647.13, intron 2 of 10) 5661 ENSMUSG00000042647.13 ENSMUSG00000042647 ENSMUST00000197916 Acad12 protein_coding Interval_72263 chr17 28876609 28877325 + 0 NA exon (ENSMUSG00000043286.12, exon 2 of 10) protein_coding-exon (ENSMUSG00000043286.12, exon 2 of 10) -17459 ENSMUSG00000087615.2 ENSMUSG00000087615 ENSMUST00000146779 Pnpla1os antisense Interval_37404 chr12 67267578 67267781 + 0 NA Intergenic Intergenic 78071 ENSMUSG00000113364.1 ENSMUSG00000113364 ENSMUST00000222044 Gm48059 processed_pseudogene Interval_129152 chr5 117882390 117883080 + 0 NA intron (ENSMUSG00000029361.18, intron 2 of 27) protein_coding-intron (ENSMUSG00000029361.18, intron 3 of 28) 9922 ENSMUSG00000104071.1 ENSMUSG00000104071 ENSMUST00000194276 Gm37028 TEC Interval_79934 chr18 36046875 36048174 + 0 NA intron (ENSMUSG00000060275.14, intron 2 of 9) protein_coding-intron (ENSMUSG00000060275.14, intron 3 of 7) 21101 ENSMUSG00000060275.14 ENSMUSG00000060275 ENSMUST00000115705 Nrg2 protein_coding Interval_114791 chr4 85293872 85294489 + 0 NA intron (ENSMUSG00000028488.15, intron 1 of 7) protein_coding-intron (ENSMUSG00000028488.15, intron 1 of 8) -48418 ENSMUSG00000081862.1 ENSMUSG00000081862 ENSMUST00000121508 Gm12413 processed_pseudogene Interval_125480 chr5 67456920 67457405 + 0 NA Intergenic Intergenic 3683 ENSMUSG00000106925.1 ENSMUSG00000106925 ENSMUST00000202231 Gm20072 processed_pseudogene Interval_158983 chr8 88437390 88438304 + 0 NA Intergenic Intergenic 46726 ENSMUSG00000110280.1 ENSMUSG00000110280 ENSMUST00000211701 Gm45497 processed_pseudogene Interval_55915 chr14 102110464 102110673 + 0 NA Intergenic Intergenic -127805 ENSMUSG00000115584.1 ENSMUSG00000115584 ENSMUST00000226515 Gm5854 processed_pseudogene Interval_78244 chr18 10643129 10643440 + 0 NA intron (ENSMUSG00000002475.16, intron 8 of 8) protein_coding-intron (ENSMUSG00000002475.16, intron 8 of 8) 21034 ENSMUSG00000002475.16 ENSMUSG00000002475 ENSMUST00000234419 Abhd3 protein_coding Interval_116761 chr4 117138333 117139667 + 0 NA Intergenic Intergenic -5201 ENSMUSG00000028680.14 ENSMUSG00000028680 ENSMUST00000147730 Plk3 protein_coding Interval_115021 chr4 88584323 88585316 + 0 NA Intergenic Intergenic -4245 ENSMUSG00000080964.1 ENSMUSG00000080964 ENSMUST00000119856 Ifna-ps1 unprocessed_pseudogene Interval_93690 chr2 75873869 75874404 + 0 NA intron (ENSMUSG00000042410.16, intron 1 of 2) protein_coding-intron (ENSMUSG00000042410.16, intron 10 of 19) -35035 ENSMUSG00000042410.16 ENSMUSG00000042410 ENSMUST00000177204 Agps protein_coding Interval_21597 chr10 130430340 130431094 + 0 NA Intergenic Intergenic -1014 ENSMUSG00000092048.3 ENSMUSG00000092048 ENSMUST00000171811 Vmn2r85 protein_coding Interval_132192 chr5 143252985 143255449 + 0 NA exon (ENSMUSG00000046658.16, exon 5 of 5) protein_coding-exon (ENSMUSG00000046658.16, exon 5 of 5) 1983 ENSMUSG00000046658.16 ENSMUSG00000046658 ENSMUST00000051665 Zfp316 protein_coding Interval_108333 chr3 124237537 124238517 + 0 NA Intergenic Intergenic -8210 ENSMUSG00000104531.1 ENSMUSG00000104531 ENSMUST00000196150 Gm43731 lincRNA Interval_107500 chr3 108145445 108146524 + 0 NA exon (ENSMUSG00000000001.4, exon 1 of 9) protein_coding-exon (ENSMUSG00000000001.4, exon 1 of 9) 162 ENSMUSG00000000001.4 ENSMUSG00000000001 ENSMUST00000000001 Gnai3 protein_coding Interval_135465 chr6 39460173 39460428 + 0 NA Intergenic Intergenic 26156 ENSMUSG00000038456.9 ENSMUSG00000038456 ENSMUST00000154149 Dennd2a protein_coding Interval_63185 chr15 99614467 99615016 + 0 NA Intergenic Intergenic 13341 ENSMUSG00000043144.6 ENSMUSG00000043144 ENSMUST00000023754 Aqp6 protein_coding Interval_100903 chr2 173259424 173260189 + 0 NA intron (ENSMUSG00000038400.15, intron 1 of 3) protein_coding-intron (ENSMUSG00000038400.15, intron 1 of 3) 16383 ENSMUSG00000038400.15 ENSMUSG00000038400 ENSMUST00000124124 Pmepa1 protein_coding Interval_37185 chr12 59252663 59253164 + 0 NA Intergenic Intergenic -9760 ENSMUSG00000112385.1 ENSMUSG00000112385 ENSMUST00000217964 Gm48258 processed_pseudogene Interval_76060 chr17 74643207 74643549 + 0 NA exon (ENSMUSG00000024073.16, exon 49 of 73) protein_coding-exon (ENSMUSG00000024073.16, exon 49 of 73) 7656 ENSMUSG00000024073.16 ENSMUSG00000024073 ENSMUST00000182157 Birc6 protein_coding Interval_126835 chr5 93643629 93644242 + 0 NA intron (ENSMUSG00000070686.10, intron 1 of 3) protein_coding-intron (ENSMUSG00000070686.10, intron 1 of 2) 27616 ENSMUSG00000070686.10 ENSMUSG00000070686 ENSMUST00000160382 C87414 protein_coding Interval_35407 chr12 21395452 21396008 + 0 NA TTS (ENSMUSG00000076432.13) protein_coding-TTS (ENSMUSG00000076432.13) 21858 ENSMUSG00000076432.13 ENSMUSG00000076432 ENSMUST00000146206 Ywhaq protein_coding Interval_93541 chr2 73920713 73921061 + 0 NA Intergenic Intergenic -9596 ENSMUSG00000018770.9 ENSMUSG00000018770 ENSMUST00000155474 Atp5g3 protein_coding Interval_359 chr1 4524679 4524936 + 0 NA exon (ENSMUSG00000102269.1, exon 2 of 2) processed_pseudogene-exon (ENSMUSG00000102269.1, exon 2 of 2) 1902 ENSMUSG00000102269.1 ENSMUSG00000102269 ENSMUST00000195361 Gm7357 processed_pseudogene Interval_140345 chr6 116774808 116775341 + 0 NA Intergenic Intergenic -9422 ENSMUSG00000088374.1 ENSMUSG00000088374 ENSMUST00000157749 Gm22882 snoRNA Interval_156419 chr8 48016246 48017151 + 0 NA Intergenic Intergenic -7565 ENSMUSG00000110624.1 ENSMUSG00000110624 ENSMUST00000212073 Gm32052 lincRNA Interval_165175 chr9 45008952 45009913 + 0 NA promoter-TSS (ENSMUSG00000111690.1) TEC-promoter-TSS (ENSMUSG00000111690.1) -85 ENSMUSG00000111690.1 ENSMUSG00000111690 ENSMUST00000216159 Gm48720 TEC Interval_116745 chr4 117041056 117041300 + 0 NA intron (ENSMUSG00000028683.14, intron 3 of 11) protein_coding-intron (ENSMUSG00000028683.14, intron 2 of 9) 13967 ENSMUSG00000088349.1 ENSMUSG00000088349 ENSMUST00000157724 Gm22335 snRNA Interval_92337 chr2 59053543 59054543 + 0 NA intron (ENSMUSG00000036641.9, intron 1 of 14) protein_coding-intron (ENSMUSG00000036641.9, intron 1 of 14) -94336 ENSMUSG00000082989.1 ENSMUSG00000082989 ENSMUST00000120771 Gm13557 processed_pseudogene Interval_109371 chr3 140688257 140688435 + 0 NA Intergenic Intergenic -60914 ENSMUSG00000106159.1 ENSMUSG00000106159 ENSMUST00000199170 Gm31211 processed_pseudogene Interval_94351 chr2 90447265 90447451 + 0 NA intron (ENSMUSG00000025314.16, intron 18 of 23) protein_coding-intron (ENSMUSG00000025314.16, intron 16 of 21) -31892 ENSMUSG00000085471.1 ENSMUSG00000085471 ENSMUST00000126953 4933423P22Rik antisense Interval_141993 chr6 136421101 136423224 + 0 NA Intergenic Intergenic 4350 ENSMUSG00000088409.1 ENSMUSG00000088409 ENSMUST00000157784 Gm25882 snRNA Interval_45287 chr13 54047422 54048007 + 0 NA Intergenic Intergenic 7066 ENSMUSG00000021478.6 ENSMUSG00000021478 ENSMUST00000222706 Drd1 protein_coding Interval_121109 chr4 153109858 153110701 + 0 NA Intergenic Intergenic 36664 ENSMUSG00000085648.1 ENSMUSG00000085648 ENSMUST00000151703 Gm13173 lincRNA Interval_24208 chr11 31484946 31485179 + 0 NA Intergenic Intergenic -115015 ENSMUSG00000020303.2 ENSMUSG00000020303 ENSMUST00000134199 Stc2 protein_coding Interval_19531 chr10 102374173 102374549 + 0 NA promoter-TSS (ENSMUSG00000019888.16) protein_coding-promoter-TSS (ENSMUSG00000019888.16) -41522 ENSMUSG00000111990.1 ENSMUSG00000111990 ENSMUST00000218629 Gm47033 lincRNA Interval_154764 chr8 23189093 23190072 + 0 NA intron (ENSMUSG00000031545.6, intron 2 of 6) protein_coding-intron (ENSMUSG00000031545.6, intron 2 of 12) 18763 ENSMUSG00000031545.6 ENSMUSG00000031545 ENSMUST00000209507 Gpat4 protein_coding Interval_1213 chr1 17174863 17175752 + 0 NA Intergenic Intergenic 6904 ENSMUSG00000099899.1 ENSMUSG00000099899 ENSMUST00000187817 Gm28784 lincRNA Interval_145417 chr7 34629908 34631178 + 0 NA Intergenic Intergenic 7169 ENSMUSG00000108723.1 ENSMUSG00000108723 ENSMUST00000206863 Gm44837 lincRNA Interval_142288 chr6 140464358 140464713 + 0 NA intron (ENSMUSG00000030231.11, intron 1 of 9) protein_coding-intron (ENSMUSG00000030231.11, intron 3 of 30) 44364 ENSMUSG00000107891.1 ENSMUSG00000107891 ENSMUST00000204085 Gm5051 processed_pseudogene Interval_121994 chr5 13318812 13320392 + 0 NA intron (ENSMUSG00000028883.17, intron 3 of 8) protein_coding-intron (ENSMUSG00000028883.17, intron 3 of 8) -79975 ENSMUSG00000028883.17 ENSMUSG00000028883 ENSMUST00000200073 Sema3a protein_coding Interval_98484 chr2 152726512 152728465 + 0 NA Intergenic Intergenic -8763 ENSMUSG00000042745.9 ENSMUSG00000042745 ENSMUST00000109824 Id1 protein_coding Interval_165610 chr9 50379098 50379451 + 0 NA Intergenic Intergenic -34306 ENSMUSG00000058443.5 ENSMUSG00000058443 ENSMUST00000076364 Rpl10-ps3 protein_coding Interval_106673 chr3 98362907 98363322 + 0 NA Intergenic Intergenic -19347 ENSMUSG00000050064.14 ENSMUSG00000050064 ENSMUST00000178372 Zfp697 protein_coding Interval_23908 chr11 28170922 28172819 + 0 NA Intergenic Intergenic 125835 ENSMUSG00000083201.1 ENSMUSG00000083201 ENSMUST00000119821 Gm12080 processed_pseudogene Interval_79212 chr18 25695240 25695582 + 0 NA intron (ENSMUSG00000024268.16, intron 1 of 12) protein_coding-intron (ENSMUSG00000024268.16, intron 1 of 12) -18359 ENSMUSG00000114511.1 ENSMUSG00000114511 ENSMUST00000224766 0710001A04Rik antisense Interval_130351 chr5 126458498 126458721 + 0 NA Intergenic Intergenic 10151 ENSMUSG00000104175.1 ENSMUSG00000104175 ENSMUST00000192617 Gm37700 TEC Interval_53387 chr14 56838127 56838361 + 0 NA Intergenic Intergenic -1088 ENSMUSG00000077685.1 ENSMUSG00000077685 ENSMUST00000104497 Gm22498 snoRNA Interval_115669 chr4 101893674 101894438 + 0 NA promoter-TSS (ENSMUSG00000046133.3) protein_coding-promoter-TSS (ENSMUSG00000046133.3) -267 ENSMUSG00000046133.3 ENSMUSG00000046133 ENSMUST00000051043 C130073F10Rik protein_coding Interval_34534 chr12 4928453 4929044 + 0 NA intron (ENSMUSG00000052812.5, intron 1 of 6) protein_coding-intron (ENSMUSG00000052812.5, intron 1 of 30) -21484 ENSMUSG00000020634.12 ENSMUSG00000020634 ENSMUST00000141360 Ubxn2a protein_coding Interval_42563 chr13 15487389 15487693 + 0 NA intron (ENSMUSG00000021318.15, intron 2 of 9) protein_coding-intron (ENSMUSG00000021318.15, intron 2 of 14) -23805 ENSMUSG00000097806.3 ENSMUSG00000097806 ENSMUST00000193256 Gm6556 processed_transcript Interval_102208 chr3 19474023 19474406 + 0 NA Intergenic Intergenic -57033 ENSMUSG00000027606.12 ENSMUSG00000027606 ENSMUST00000165693 Dnajc5b protein_coding Interval_46746 chr13 69838517 69838822 + 0 NA Intergenic Intergenic 36274 ENSMUSG00000021598.9 ENSMUSG00000021598 ENSMUST00000220649 Med10 protein_coding Interval_43403 chr13 30122598 30124034 + 0 NA Intergenic Intergenic 10842 ENSMUSG00000083676.2 ENSMUSG00000083676 ENSMUST00000117802 Gm11367 processed_pseudogene Interval_121458 chr4 155953977 155954230 + 0 NA promoter-TSS (ENSMUSG00000023286.16) protein_coding-promoter-TSS (ENSMUSG00000023286.16) 10272 ENSMUSG00000023286.16 ENSMUSG00000023286 ENSMUST00000124092 Ube2j2 protein_coding Interval_44222 chr13 42358672 42359038 + 0 NA Intergenic Intergenic -53864 ENSMUSG00000113619.1 ENSMUSG00000113619 ENSMUST00000221433 Gm47118 antisense Interval_13540 chr10 19338975 19339451 + 0 NA Intergenic Intergenic -17320 ENSMUSG00000045591.6 ENSMUSG00000045591 ENSMUST00000053225 Olig3 protein_coding Interval_41594 chr12 116640568 116642598 + 0 NA intron (ENSMUSG00000056553.14, intron 2 of 4) protein_coding-intron (ENSMUSG00000056553.14, intron 2 of 22) 44330 ENSMUSG00000101814.1 ENSMUSG00000101814 ENSMUST00000186869 Gm17807 processed_pseudogene Interval_58375 chr15 33996617 33997020 + 0 NA Intergenic Intergenic -15834 ENSMUSG00000115605.1 ENSMUSG00000115605 ENSMUST00000228920 Gm9643 processed_pseudogene Interval_146203 chr7 44670504 44671425 + 0 NA promoter-TSS (ENSMUSG00000030739.18) protein_coding-promoter-TSS (ENSMUSG00000030739.18) 2731 ENSMUSG00000070574.2 ENSMUSG00000070574 ENSMUST00000094460 2310016G11Rik antisense Interval_53115 chr14 54538315 54538944 + 0 NA Intergenic Intergenic 15816 ENSMUSG00000022177.9 ENSMUSG00000022177 ENSMUST00000228043 Haus4 protein_coding Interval_132978 chr5 149067287 149068917 + 0 NA intron (ENSMUSG00000066551.12, intron 2 of 5) protein_coding-intron (ENSMUSG00000066551.12, intron 2 of 5) -52289 ENSMUSG00000085971.4 ENSMUSG00000085971 ENSMUST00000202128 Gm15411 processed_transcript Interval_17946 chr10 81014653 81015205 + 0 NA promoter-TSS (ENSMUSG00000048240.14) protein_coding-promoter-TSS (ENSMUSG00000048240.14) -16 ENSMUSG00000048240.14 ENSMUSG00000048240 ENSMUST00000126317 Gng7 protein_coding Interval_91048 chr2 34670557 34672317 + 0 NA Intergenic Intergenic -21197 ENSMUSG00000087635.3 ENSMUSG00000087635 ENSMUST00000117516 Gm13414 processed_pseudogene Interval_148490 chr7 81714553 81714825 + 0 NA Intergenic Intergenic -21802 ENSMUSG00000025813.14 ENSMUSG00000025813 ENSMUST00000208107 Homer2 protein_coding Interval_39765 chr12 97743871 97744075 + 0 NA Intergenic Intergenic -3729 ENSMUSG00000112524.1 ENSMUSG00000112524 ENSMUST00000217709 Gm35274 lincRNA Interval_9983 chr1 164538522 164538833 + 0 NA Intergenic Intergenic 35368 ENSMUSG00000097281.2 ENSMUSG00000097281 ENSMUST00000181831 Gm26685 lincRNA Interval_104584 chr3 68534213 68536509 + 0 NA intron (ENSMUSG00000027777.15, intron 2 of 5) protein_coding-intron (ENSMUSG00000027777.15, intron 2 of 7) 12347 ENSMUSG00000084617.1 ENSMUSG00000084617 ENSMUST00000122668 Gm22073 snRNA Interval_417 chr1 5082593 5083716 + 0 NA promoter-TSS (ENSMUSG00000033793.12) protein_coding-promoter-TSS (ENSMUSG00000033793.12) 22 ENSMUSG00000033793.12 ENSMUSG00000033793 ENSMUST00000192142 Atp6v1h protein_coding Interval_138528 chr6 88927690 88927918 + 0 NA Intergenic Intergenic 8096 ENSMUSG00000107676.1 ENSMUSG00000107676 ENSMUST00000205229 Gm44178 TEC Interval_13687 chr10 21046105 21046897 + 0 NA intron (ENSMUSG00000111227.1, intron 1 of 3) protein_coding-intron (ENSMUSG00000019986.17, intron 19 of 23) 2398 ENSMUSG00000111227.1 ENSMUSG00000111227 ENSMUST00000214691 Gm20149 antisense Interval_16858 chr10 69311885 69312569 + 0 NA promoter-TSS (ENSMUSG00000112798.1) lincRNA-promoter-TSS (ENSMUSG00000112798.1) 88 ENSMUSG00000112798.1 ENSMUSG00000112798 ENSMUST00000217861 Gm40685 lincRNA Interval_83538 chr18 88971457 88972426 + 0 NA promoter-TSS (ENSMUSG00000098676.1) miRNA-promoter-TSS (ENSMUSG00000098676.1) -89 ENSMUSG00000098676.1 ENSMUSG00000098676 ENSMUST00000183668 Mir6359 miRNA Interval_11386 chr1 181454690 181455341 + 0 NA intron (ENSMUSG00000026514.14, intron 5 of 5) protein_coding-intron (ENSMUSG00000026514.14, intron 5 of 5) -22615 ENSMUSG00000089927.1 ENSMUSG00000089927 ENSMUST00000160086 Gm16539 unprocessed_pseudogene Interval_130638 chr5 129376577 129377391 + 0 NA Intergenic Intergenic 12864 ENSMUSG00000104681.1 ENSMUSG00000104681 ENSMUST00000199076 Gm43001 lincRNA Interval_21116 chr10 126625435 126625845 + 0 NA Intergenic Intergenic -38358 ENSMUSG00000112208.1 ENSMUSG00000112208 ENSMUST00000219762 Gm40797 lincRNA Interval_70376 chr17 9399047 9399355 + 0 NA Intergenic Intergenic -22859 ENSMUSG00000072968.4 ENSMUSG00000072968 ENSMUST00000076982 Gm17728 protein_coding Interval_128390 chr5 113078610 113080436 + 0 NA TTS (ENSMUSG00000029352.14) protein_coding-TTS (ENSMUSG00000029352.14) 868 ENSMUSG00000029352.14 ENSMUSG00000029352 ENSMUST00000136352 Crybb3 protein_coding Interval_110966 chr4 10932061 10933064 + 0 NA Intergenic Intergenic -14046 ENSMUSG00000081715.1 ENSMUSG00000081715 ENSMUST00000117608 Rps11-ps3 processed_pseudogene Interval_116143 chr4 108092216 108092447 + 0 NA intron (ENSMUSG00000028603.15, intron 6 of 7) protein_coding-intron (ENSMUSG00000028603.15, intron 7 of 15) 4974 ENSMUSG00000098980.1 ENSMUSG00000098980 ENSMUST00000183919 Mir6397 miRNA Interval_115617 chr4 101418625 101420564 + 0 NA promoter-TSS (ENSMUSG00000028527.18) protein_coding-promoter-TSS (ENSMUSG00000028527.18) 16513 ENSMUSG00000084758.1 ENSMUSG00000084758 ENSMUST00000124786 Gm12798 lincRNA Interval_38119 chr12 75763961 75764175 + 0 NA Intergenic Intergenic -28372 ENSMUSG00000021054.6 ENSMUSG00000021054 ENSMUST00000220285 Sgpp1 protein_coding Interval_129913 chr5 123038010 123039792 + 0 NA TTS (ENSMUSG00000105107.1) TEC-TTS (ENSMUSG00000105107.1) 2901 ENSMUSG00000105107.1 ENSMUSG00000105107 ENSMUST00000197455 Gm43412 TEC Interval_159474 chr8 94948985 94950517 + 0 NA Intergenic Intergenic 20003 ENSMUSG00000070111.4 ENSMUSG00000070111 ENSMUST00000093603 Gm10286 TEC Interval_11898 chr1 186887376 186887612 + 0 NA Intergenic Intergenic -39468 ENSMUSG00000103503.1 ENSMUSG00000103503 ENSMUST00000194671 1700023G09Rik lincRNA Interval_143287 chr7 4963834 4964883 + 0 NA promoter-TSS (ENSMUSG00000030433.15) protein_coding-promoter-TSS (ENSMUSG00000030433.15) 48 ENSMUSG00000030433.15 ENSMUSG00000030433 ENSMUST00000182837 Sbk2 protein_coding Interval_58973 chr15 41179334 41180881 + 0 NA Intergenic Intergenic 6620 ENSMUSG00000048559.5 ENSMUSG00000048559 ENSMUST00000060066 4930555K19Rik processed_pseudogene Interval_110751 chr4 8041930 8042098 + 0 NA Intergenic Intergenic -76606 ENSMUSG00000083068.1 ENSMUSG00000083068 ENSMUST00000120050 Gm11800 processed_pseudogene Interval_59607 chr15 55965205 55965941 + 0 NA Intergenic Intergenic -8032 ENSMUSG00000115651.1 ENSMUSG00000115651 ENSMUST00000228166 Gm7595 processed_pseudogene Interval_5971 chr1 93624058 93624601 + 0 NA intron (ENSMUSG00000026277.14, intron 2 of 3) protein_coding-intron (ENSMUSG00000026277.14, intron 10 of 11) -10864 ENSMUSG00000100927.1 ENSMUSG00000100927 ENSMUST00000190971 Gm28536 antisense Interval_50047 chr13 120187753 120188113 + 0 NA Intergenic Intergenic -6581 ENSMUSG00000114398.1 ENSMUSG00000114398 ENSMUST00000225106 Gm20763 processed_pseudogene Interval_6503 chr1 112954826 112955029 + 0 NA Intergenic Intergenic 12004 ENSMUSG00000100304.1 ENSMUSG00000100304 ENSMUST00000189766 Gm28190 processed_pseudogene Interval_103994 chr3 56603597 56604162 + 0 NA Intergenic Intergenic -158467 ENSMUSG00000077710.1 ENSMUSG00000077710 ENSMUST00000104522 Gm25727 snoRNA Interval_31873 chr11 103504500 103505027 + 0 NA promoter-TSS (ENSMUSG00000078632.4) protein_coding-promoter-TSS (ENSMUSG00000078632.4) -166 ENSMUSG00000078632.4 ENSMUSG00000078632 ENSMUST00000153273 Lrrc37a protein_coding Interval_87759 chr19 55694369 55694965 + 0 NA Intergenic Intergenic -47597 ENSMUSG00000024985.20 ENSMUSG00000024985 ENSMUST00000148666 Tcf7l2 protein_coding Interval_72558 chr17 30660468 30660815 + 0 NA intron (ENSMUSG00000033826.10, intron 9 of 90) protein_coding-intron (ENSMUSG00000033826.10, intron 11 of 92) -9999 ENSMUSG00000033826.10 ENSMUSG00000033826 ENSMUST00000235567 Dnah8 protein_coding Interval_136353 chr6 53696770 53697294 + 0 NA exon (ENSMUSG00000053007.9, exon 11 of 11) protein_coding-exon (ENSMUSG00000053007.9, exon 11 of 11) 29262 ENSMUSG00000108004.1 ENSMUSG00000108004 ENSMUST00000204451 Gm44080 TEC Interval_133072 chr5 149647488 149649626 + 0 NA TTS (ENSMUSG00000106674.1) lincRNA-TTS (ENSMUSG00000106674.1) 6947 ENSMUSG00000106674.1 ENSMUSG00000106674 ENSMUST00000202583 Gm20005 lincRNA Interval_27056 chr11 62592184 62593194 + 0 NA intron (ENSMUSG00000018507.16, intron 8 of 13) protein_coding-intron (ENSMUSG00000018507.16, intron 10 of 15) -10188 ENSMUSG00000086841.1 ENSMUSG00000086841 ENSMUST00000131787 2410006H16Rik processed_transcript Interval_20056 chr10 112872189 112872469 + 0 NA Intergenic Intergenic 34577 ENSMUSG00000112722.1 ENSMUSG00000112722 ENSMUST00000218495 Gm3942 lincRNA Interval_133128 chr5 150051788 150052253 + 0 NA intron (ENSMUSG00000053368.13, intron 8 of 16) protein_coding-intron (ENSMUSG00000053368.13, intron 8 of 17) 29541 ENSMUSG00000107360.1 ENSMUSG00000107360 ENSMUST00000200982 Gm42558 sense_intronic Interval_24675 chr11 35821667 35822308 + 0 NA promoter-TSS (ENSMUSG00000018848.4) protein_coding-promoter-TSS (ENSMUSG00000018848.4) 3146 ENSMUSG00000018848.4 ENSMUSG00000018848 ENSMUST00000137815 Rars protein_coding Interval_91769 chr2 49393243 49394114 + 0 NA Intergenic Intergenic 4837 ENSMUSG00000077769.1 ENSMUSG00000077769 ENSMUST00000104581 Gm25215 snoRNA Interval_139900 chr6 112530212 112531605 + 0 NA Intergenic Intergenic 17461 ENSMUSG00000099205.1 ENSMUSG00000099205 ENSMUST00000185155 Gm27944 snRNA Interval_109095 chr3 135707198 135708094 + 0 NA Intergenic Intergenic -53080 ENSMUSG00000106149.1 ENSMUSG00000106149 ENSMUST00000196513 Gm43430 TEC Interval_79855 chr18 35586069 35587171 + 0 NA intron (ENSMUSG00000037236.16, intron 12 of 14) protein_coding-intron (ENSMUSG00000037236.16, intron 12 of 14) 11713 ENSMUSG00000102496.1 ENSMUSG00000102496 ENSMUST00000193225 Gm36989 TEC Interval_32196 chr11 106057267 106057481 + 0 NA exon (ENSMUSG00000049354.8, exon 7 of 7) protein_coding-exon (ENSMUSG00000049354.8, exon 7 of 7) -5522 ENSMUSG00000085033.1 ENSMUSG00000085033 ENSMUST00000135857 Gm11646 antisense Interval_132169 chr5 143061131 143061706 + 0 NA intron (ENSMUSG00000045078.12, intron 13 of 16) protein_coding-intron (ENSMUSG00000045078.12, intron 13 of 16) -6235 ENSMUSG00000105714.1 ENSMUSG00000105714 ENSMUST00000200421 Gm43380 processed_pseudogene Interval_62647 chr15 95943426 95943698 + 0 NA exon (ENSMUSG00000064210.7, exon 2 of 2) protein_coding-exon (ENSMUSG00000064210.7, exon 2 of 2) 50567 ENSMUSG00000115049.1 ENSMUSG00000115049 ENSMUST00000227616 Gm49172 processed_transcript Interval_157160 chr8 66631913 66632354 + 0 NA Intergenic Intergenic -43125 ENSMUSG00000085082.1 ENSMUSG00000085082 ENSMUST00000128324 Gm16330 processed_pseudogene Interval_8833 chr1 151445443 151446007 + 0 NA exon (ENSMUSG00000103928.1, exon 1 of 1) TEC-exon (ENSMUSG00000103928.1, exon 1 of 1) 420 ENSMUSG00000103928.1 ENSMUSG00000103928 ENSMUST00000192826 Gm37893 TEC Interval_76487 chr17 80543570 80544308 + 0 NA intron (ENSMUSG00000033966.8, intron 5 of 9) protein_coding-intron (ENSMUSG00000033966.8, intron 5 of 9) -9525 ENSMUSG00000117375.1 ENSMUSG00000117375 ENSMUST00000234757 Gm33373 antisense Interval_16827 chr10 68770377 68770894 + 0 NA intron (ENSMUSG00000060044.8, intron 5 of 6) protein_coding-intron (ENSMUSG00000060044.8, intron 4 of 5) 46989 ENSMUSG00000060044.8 ENSMUSG00000060044 ENSMUST00000218918 Tmem26 protein_coding Interval_68309 chr16 72979563 72980099 + 0 NA TTS (ENSMUSG00000022883.11) protein_coding-TTS (ENSMUSG00000022883.11) 3482 ENSMUSG00000022883.11 ENSMUSG00000022883 ENSMUST00000232432 Robo1 protein_coding Interval_37997 chr12 73704015 73704384 + 0 NA intron (ENSMUSG00000021108.18, intron 10 of 14) protein_coding-intron (ENSMUSG00000021108.18, intron 9 of 13) -89284 ENSMUSG00000113321.1 ENSMUSG00000113321 ENSMUST00000222997 Gm8075 lincRNA Interval_92778 chr2 65375454 65375886 + 0 NA TTS (ENSMUSG00000088197.1) snoRNA-TTS (ENSMUSG00000088197.1) 612 ENSMUSG00000088197.1 ENSMUSG00000088197 ENSMUST00000157572 Gm24138 snoRNA Interval_71043 chr17 17392989 17393309 + 0 NA intron (ENSMUSG00000097379.2, intron 3 of 4) protein_coding-intron (ENSMUSG00000116564.1, intron 9 of 9) 18577 ENSMUSG00000116564.1 ENSMUSG00000116564 ENSMUST00000232199 Riok2 protein_coding Interval_55418 chr14 87019870 87020518 + 0 NA intron (ENSMUSG00000022021.14, intron 4 of 15) protein_coding-intron (ENSMUSG00000022021.14, intron 5 of 27) -99483 ENSMUSG00000077948.2 ENSMUSG00000077948 ENSMUST00000104755 Gm23438 miRNA Interval_116391 chr4 111328055 111328260 + 0 NA intron (ENSMUSG00000061298.14, intron 1 of 6) protein_coding-intron (ENSMUSG00000061298.14, intron 5 of 12) -7552 ENSMUSG00000083904.1 ENSMUSG00000083904 ENSMUST00000117305 Gm12805 processed_pseudogene Interval_120345 chr4 148038491 148039434 + 0 NA promoter-TSS (ENSMUSG00000029016.13) protein_coding-promoter-TSS (ENSMUSG00000029016.13) -141 ENSMUSG00000029016.13 ENSMUSG00000029016 ENSMUST00000131232 Clcn6 protein_coding Interval_26264 chr11 55505276 55506611 + 0 NA Intergenic Intergenic 4717 ENSMUSG00000098906.1 ENSMUSG00000098906 ENSMUST00000185156 Mir7652 miRNA Interval_164766 chr9 41515095 41515638 + 0 NA intron (ENSMUSG00000074415.14, intron 2 of 3) processed_transcript-intron (ENSMUSG00000074415.14, intron 2 of 3) -1586 ENSMUSG00000110801.1 ENSMUSG00000110801 ENSMUST00000215745 Gm48736 processed_pseudogene Interval_166979 chr9 64287196 64287706 + 0 NA intron (ENSMUSG00000032397.7, intron 1 of 7) protein_coding-intron (ENSMUSG00000032397.7, intron 1 of 7) 5848 ENSMUSG00000032397.7 ENSMUSG00000032397 ENSMUST00000034964 Tipin protein_coding Interval_76537 chr17 80836687 80837124 + 0 NA Intergenic Intergenic -59888 ENSMUSG00000112121.1 ENSMUSG00000112121 ENSMUST00000220067 C230072F16Rik lincRNA Interval_57140 chr15 6883279 6884063 + 0 NA Intergenic Intergenic -9414 ENSMUSG00000022146.12 ENSMUSG00000022146 ENSMUST00000177263 Osmr protein_coding Interval_22227 chr11 7302319 7302527 + 0 NA Intergenic Intergenic -12049 ENSMUSG00000087637.1 ENSMUSG00000087637 ENSMUST00000149481 Gm11986 lincRNA Interval_150993 chr7 117467462 117467909 + 0 NA intron (ENSMUSG00000030657.11, intron 1 of 6) protein_coding-intron (ENSMUSG00000030657.11, intron 1 of 11) -7807 ENSMUSG00000030657.11 ENSMUSG00000030657 ENSMUST00000161889 Xylt1 protein_coding Interval_121839 chr5 8731844 8733584 + 0 NA promoter-TSS (ENSMUSG00000040584.8) protein_coding-promoter-TSS (ENSMUSG00000040584.8) 3054 ENSMUSG00000104535.1 ENSMUSG00000104535 ENSMUST00000199172 Gm42686 TEC Interval_18763 chr10 90170512 90170804 + 0 NA intron (ENSMUSG00000058589.14, intron 9 of 25) protein_coding-intron (ENSMUSG00000058589.14, intron 9 of 17) -35841 ENSMUSG00000112140.1 ENSMUSG00000112140 ENSMUST00000217774 Gm5780 processed_pseudogene Interval_61658 chr15 83244273 83245174 + 0 NA intron (ENSMUSG00000047878.13, intron 1 of 2) protein_coding-intron (ENSMUSG00000047878.13, intron 1 of 2) 7006 ENSMUSG00000047878.13 ENSMUSG00000047878 ENSMUST00000229454 A4galt protein_coding Interval_138385 chr6 87787007 87787193 + 0 NA Intergenic Intergenic 2975 ENSMUSG00000030055.16 ENSMUSG00000030055 ENSMUST00000032135 Rab43 protein_coding Interval_135071 chr6 35171787 35172237 + 0 NA Intergenic Intergenic -5604 ENSMUSG00000038759.15 ENSMUSG00000038759 ENSMUST00000200739 Nup205 protein_coding Interval_159962 chr8 105441386 105442362 + 0 NA intron (ENSMUSG00000054320.16, intron 5 of 13) protein_coding-intron (ENSMUSG00000054320.16, intron 2 of 10) 27536 ENSMUSG00000014846.12 ENSMUSG00000014846 ENSMUST00000176419 Tppp3 protein_coding Interval_103212 chr3 36840967 36841587 + 0 NA Intergenic Intergenic -16319 ENSMUSG00000084027.1 ENSMUSG00000084027 ENSMUST00000120538 Gm12376 processed_pseudogene Interval_4974 chr1 83116494 83116909 + 0 NA promoter-TSS (ENSMUSG00000026166.14) protein_coding-promoter-TSS (ENSMUSG00000026166.14) -92 ENSMUSG00000026166.14 ENSMUSG00000026166 ENSMUST00000186832 Ccl20 protein_coding Interval_114141 chr4 64296487 64296893 + 0 NA Intergenic Intergenic -20087 ENSMUSG00000085032.1 ENSMUSG00000085032 ENSMUST00000141162 Gm11217 lincRNA Interval_2221 chr1 37135389 37135789 + 0 NA promoter-TSS (ENSMUSG00000050122.19) protein_coding-promoter-TSS (ENSMUSG00000050122.19) -2325 ENSMUSG00000103603.1 ENSMUSG00000103603 ENSMUST00000195303 Gm37020 antisense Interval_40550 chr12 105677815 105678654 + 0 NA intron (ENSMUSG00000041341.10, intron 1 of 10) protein_coding-intron (ENSMUSG00000041341.10, intron 1 of 41) -7167 ENSMUSG00000044715.7 ENSMUSG00000044715 ENSMUST00000222841 Gskip protein_coding Interval_16700 chr10 67095963 67097267 + 0 NA exon (ENSMUSG00000037876.17, exon 1 of 2) protein_coding-exon (ENSMUSG00000037876.17, exon 1 of 2) -59293 ENSMUSG00000019873.8 ENSMUSG00000019873 ENSMUST00000219431 Reep3 protein_coding Interval_166103 chr9 56624927 56625371 + 0 NA intron (ENSMUSG00000049556.5, intron 6 of 6) protein_coding-intron (ENSMUSG00000049556.5, intron 3 of 3) 18456 ENSMUSG00000097870.2 ENSMUSG00000097870 ENSMUST00000181927 Gm26868 lincRNA Interval_5828 chr1 92295690 92296141 + 0 NA Intergenic Intergenic -28595 ENSMUSG00000101265.1 ENSMUSG00000101265 ENSMUST00000187370 Gm29099 lincRNA Interval_99418 chr2 160872306 160873547 + 0 NA promoter-TSS (ENSMUSG00000035877.17) protein_coding-promoter-TSS (ENSMUSG00000035877.17) -97 ENSMUSG00000035877.17 ENSMUSG00000035877 ENSMUST00000127201 Zhx3 protein_coding Interval_133727 chr6 10146793 10147674 + 0 NA Intergenic Intergenic 25621 ENSMUSG00000107459.1 ENSMUSG00000107459 ENSMUST00000203122 Gm5110 processed_pseudogene Interval_26107 chr11 54326126 54326423 + 0 NA TTS (ENSMUSG00000020333.17) protein_coding-TTS (ENSMUSG00000020333.17) 6122 ENSMUSG00000020333.17 ENSMUSG00000020333 ENSMUST00000139484 Acsl6 protein_coding Interval_1744 chr1 33482044 33482427 + 0 NA exon (ENSMUSG00000101682.1, exon 1 of 1) processed_pseudogene-exon (ENSMUSG00000101682.1, exon 1 of 1) 134 ENSMUSG00000101682.1 ENSMUSG00000101682 ENSMUST00000185489 Gm29228 processed_pseudogene Interval_62591 chr15 95049250 95050183 + 0 NA intron (ENSMUSG00000063296.5, intron 6 of 7) protein_coding-intron (ENSMUSG00000063296.5, intron 6 of 7) -62578 ENSMUSG00000077447.1 ENSMUSG00000077447 ENSMUST00000104259 Gm23129 snoRNA Interval_92027 chr2 52691517 52692007 + 0 NA TTS (ENSMUSG00000055371.17) protein_coding-TTS (ENSMUSG00000055371.17) -15180 ENSMUSG00000017412.15 ENSMUSG00000017412 ENSMUST00000148837 Cacnb4 protein_coding Interval_145878 chr7 41320548 41320783 + 0 NA Intergenic Intergenic 6650 ENSMUSG00000101449.1 ENSMUSG00000101449 ENSMUST00000185660 Gm17791 processed_pseudogene Interval_1082 chr1 15266472 15267299 + 0 NA Intergenic Intergenic 2912 ENSMUSG00000073737.3 ENSMUSG00000073737 ENSMUST00000086739 Gm10566 processed_pseudogene Interval_113247 chr4 52059551 52060696 + 0 NA Intergenic Intergenic -9013 ENSMUSG00000085515.1 ENSMUSG00000085515 ENSMUST00000141452 C630028M04Rik lincRNA Interval_166173 chr9 57247110 57247597 + 0 NA intron (ENSMUSG00000070298.6, intron 8 of 12) protein_coding-intron (ENSMUSG00000070298.6, intron 8 of 12) 10797 ENSMUSG00000070298.6 ENSMUSG00000070298 ENSMUST00000093837 Trcg1 protein_coding Interval_38024 chr12 74055252 74056104 + 0 NA intron (ENSMUSG00000044912.11, intron 1 of 3) protein_coding-intron (ENSMUSG00000044912.11, intron 1 of 7) 91197 ENSMUSG00000021113.5 ENSMUSG00000021113 ENSMUST00000220909 Snapc1 protein_coding Interval_114261 chr4 70294058 70294250 + 0 NA intron (ENSMUSG00000039298.16, intron 18 of 36) protein_coding-intron (ENSMUSG00000039298.16, intron 15 of 33) -44781 ENSMUSG00000080902.1 ENSMUSG00000080902 ENSMUST00000120944 Ywhaq-ps3 transcribed_processed_pseudogene Interval_80140 chr18 37813835 37815991 + 0 NA promoter-TSS (ENSMUSG00000023036.14) protein_coding-promoter-TSS (ENSMUSG00000023036.14) -488 ENSMUSG00000023036.14 ENSMUSG00000023036 ENSMUST00000193222 Pcdhgc4 protein_coding Interval_15113 chr10 42643580 42644456 + 0 NA intron (ENSMUSG00000038280.12, intron 2 of 6) protein_coding-intron (ENSMUSG00000038280.12, intron 2 of 5) -34948 ENSMUSG00000038280.12 ENSMUSG00000038280 ENSMUST00000154048 Ostm1 protein_coding Interval_121610 chr5 3888750 3889425 + 0 NA Intergenic Intergenic 4809 ENSMUSG00000040429.6 ENSMUSG00000040429 ENSMUST00000196417 Mterf1a protein_coding Interval_86103 chr19 36689350 36691013 + 0 NA promoter-TSS (ENSMUSG00000087579.7) antisense-promoter-TSS (ENSMUSG00000087579.7) -31597 ENSMUSG00000087579.7 ENSMUSG00000087579 ENSMUST00000128603 Hectd2os antisense Interval_163202 chr9 18088697 18089644 + 0 NA TTS (ENSMUSG00000111728.1) processed_pseudogene-TTS (ENSMUSG00000111728.1) 1125 ENSMUSG00000111728.1 ENSMUSG00000111728 ENSMUST00000216330 Gm48850 processed_pseudogene Interval_75932 chr17 73163472 73164611 + 0 NA intron (ENSMUSG00000054469.14, intron 1 of 4) protein_coding-intron (ENSMUSG00000054469.14, intron 2 of 5) 27644 ENSMUSG00000081492.1 ENSMUSG00000081492 ENSMUST00000118042 Gm9311 processed_pseudogene Interval_70395 chr17 9728650 9729312 + 0 NA Intergenic Intergenic -2628 ENSMUSG00000117341.1 ENSMUSG00000117341 ENSMUST00000233960 Gm34684 lincRNA Interval_64615 chr16 13682290 13683296 + 0 NA intron (ENSMUSG00000022684.15, intron 1 of 1) protein_coding-intron (ENSMUSG00000022684.15, intron 1 of 7) 10806 ENSMUSG00000022684.15 ENSMUSG00000022684 ENSMUST00000154568 Bfar protein_coding Interval_28013 chr11 72214671 72215884 + 0 NA promoter-TSS (ENSMUSG00000020801.8) protein_coding-promoter-TSS (ENSMUSG00000020801.8) 105 ENSMUSG00000053574.5 ENSMUSG00000053574 ENSMUST00000124762 4930563E22Rik protein_coding Interval_104278 chr3 62530535 62531015 + 0 NA exon (ENSMUSG00000043441.5, exon 4 of 4) protein_coding-exon (ENSMUSG00000043441.5, exon 4 of 4) -28642 ENSMUSG00000027770.5 ENSMUSG00000027770 ENSMUST00000192223 Dhx36 protein_coding Interval_23441 chr11 22632895 22633127 + 0 NA Intergenic Intergenic -6347 ENSMUSG00000083008.1 ENSMUSG00000083008 ENSMUST00000119022 Gm12053 processed_pseudogene Interval_97489 chr2 137432942 137433275 + 0 NA Intergenic Intergenic 144605 ENSMUSG00000085504.1 ENSMUSG00000085504 ENSMUST00000130262 Gm14055 lincRNA Interval_168152 chr9 77543271 77546153 + 0 NA promoter-TSS (ENSMUSG00000032352.16) protein_coding-promoter-TSS (ENSMUSG00000032352.16) 136 ENSMUSG00000032352.16 ENSMUSG00000032352 ENSMUST00000183980 Lrrc1 protein_coding Interval_83889 chr19 5376626 5377189 + 0 NA TTS (ENSMUSG00000039148.5) protein_coding-TTS (ENSMUSG00000039148.5) 6339 ENSMUSG00000039148.5 ENSMUSG00000039148 ENSMUST00000235908 Sart1 protein_coding Interval_66615 chr16 35659575 35661379 + 0 NA promoter-TSS (ENSMUSG00000052133.16) protein_coding-promoter-TSS (ENSMUSG00000052133.16) 1892 ENSMUSG00000052133.16 ENSMUSG00000052133 ENSMUST00000128966 Sema5b protein_coding Interval_104750 chr3 70387119 70387521 + 0 NA Intergenic Intergenic -25999 ENSMUSG00000102663.1 ENSMUSG00000102663 ENSMUST00000193699 Gm6631 processed_pseudogene Interval_2750 chr1 44164681 44165030 + 0 NA intron (ENSMUSG00000026048.16, intron 4 of 4) protein_coding-intron (ENSMUSG00000026048.16, intron 7 of 14) 17111 ENSMUSG00000026048.16 ENSMUSG00000026048 ENSMUST00000155862 Ercc5 protein_coding Interval_90355 chr2 29944626 29945391 + 0 NA TTS (ENSMUSG00000019715.14) protein_coding-TTS (ENSMUSG00000019715.14) 9580 ENSMUSG00000019715.14 ENSMUSG00000019715 ENSMUST00000127390 Gle1 protein_coding Interval_52073 chr14 35145778 35145966 + 0 NA intron (ENSMUSG00000041078.7, intron 4 of 15) protein_coding-intron (ENSMUSG00000041078.7, intron 4 of 15) 73566 ENSMUSG00000115826.1 ENSMUSG00000115826 ENSMUST00000227262 Gm49034 processed_pseudogene Interval_109521 chr3 143698585 143698846 + 0 NA intron (ENSMUSG00000105279.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000105279.1, intron 1 of 1) 13428 ENSMUSG00000105279.1 ENSMUSG00000105279 ENSMUST00000196279 Gm6260 lincRNA Interval_71297 chr17 22010074 22010653 + 0 NA intron (ENSMUSG00000053347.15, intron 5 of 5) protein_coding-intron (ENSMUSG00000053347.15, intron 5 of 5) -2764 ENSMUSG00000040775.6 ENSMUSG00000040775 ENSMUST00000075018 Gm9772 processed_pseudogene Interval_134761 chr6 31284146 31285557 + 0 NA promoter-TSS (ENSMUSG00000087380.7) processed_transcript-promoter-TSS (ENSMUSG00000087380.7) -4112 ENSMUSG00000106867.1 ENSMUSG00000106867 ENSMUST00000201868 Gm43800 TEC Interval_89543 chr2 22259609 22259837 + 0 NA intron (ENSMUSG00000025716.14, intron 2 of 17) protein_coding-intron (ENSMUSG00000025716.14, intron 3 of 33) 18666 ENSMUSG00000025716.14 ENSMUSG00000025716 ENSMUST00000149423 Myo3a protein_coding Interval_147671 chr7 71464185 71464486 + 0 NA Intergenic Intergenic 112884 ENSMUSG00000099558.1 ENSMUSG00000099558 ENSMUST00000190004 Gm29295 lincRNA Interval_60315 chr15 72794124 72794333 + 0 NA intron (ENSMUSG00000047921.17, intron 16 of 21) protein_coding-intron (ENSMUSG00000047921.17, intron 16 of 21) 16096 ENSMUSG00000106847.1 ENSMUSG00000106847 ENSMUST00000202826 Peg13 sense_intronic Interval_131844 chr5 140331526 140333171 + 0 NA promoter-TSS (ENSMUSG00000029557.7) protein_coding-promoter-TSS (ENSMUSG00000029557.7) -450 ENSMUSG00000029557.7 ENSMUSG00000029557 ENSMUST00000031536 Mrm2 protein_coding Interval_88648 chr2 8676506 8676974 + 0 NA Intergenic Intergenic 42803 ENSMUSG00000084374.1 ENSMUSG00000084374 ENSMUST00000117255 Gm13255 processed_pseudogene Interval_75919 chr17 73062895 73063209 + 0 NA Intergenic Intergenic -33974 ENSMUSG00000117096.1 ENSMUSG00000117096 ENSMUST00000233236 Gm30420 lincRNA Interval_7889 chr1 134393671 134394259 + 0 NA Intergenic Intergenic 8025 ENSMUSG00000050526.5 ENSMUSG00000050526 ENSMUST00000162187 Mgat4f protein_coding Interval_77408 chr17 88508720 88509656 + 0 NA Intergenic Intergenic -23839 ENSMUSG00000103075.1 ENSMUSG00000103075 ENSMUST00000195386 Gm38109 TEC Interval_86404 chr19 40260630 40262075 + 0 NA intron (ENSMUSG00000055044.12, intron 1 of 2) protein_coding-intron (ENSMUSG00000055044.12, intron 1 of 6) -20925 ENSMUSG00000117793.1 ENSMUSG00000117793 ENSMUST00000237233 Gm5693 processed_pseudogene Interval_2094 chr1 36374940 36375255 + 0 NA intron (ENSMUSG00000037432.15, intron 3 of 52) protein_coding-intron (ENSMUSG00000037432.15, intron 3 of 52) -5926 ENSMUSG00000010453.12 ENSMUSG00000010453 ENSMUST00000188957 Kansl3 protein_coding Interval_32078 chr11 105141379 105141554 + 0 NA TTS (ENSMUSG00000088259.1) misc_RNA-TTS (ENSMUSG00000088259.1) 252 ENSMUSG00000088259.1 ENSMUSG00000088259 ENSMUST00000157634 Gm24290 misc_RNA Interval_174224 chrX 140375451 140375953 + 0 NA intron (ENSMUSG00000042425.18, intron 4 of 14) protein_coding-intron (ENSMUSG00000042425.18, intron 2 of 5) 33439 ENSMUSG00000042425.18 ENSMUSG00000042425 ENSMUST00000044702 Frmpd3 protein_coding Interval_67792 chr16 57231025 57231955 + 0 NA promoter-TSS (ENSMUSG00000022749.8) protein_coding-promoter-TSS (ENSMUSG00000022749.8) -30318 ENSMUSG00000022749.8 ENSMUSG00000022749 ENSMUST00000227359 Tbc1d23 protein_coding Interval_44433 chr13 44812043 44812752 + 0 NA intron (ENSMUSG00000038518.15, intron 2 of 4) protein_coding-intron (ENSMUSG00000038518.15, intron 2 of 18) 25886 ENSMUSG00000088189.1 ENSMUSG00000088189 ENSMUST00000157564 Gm22213 snoRNA Interval_137812 chr6 82707583 82707926 + 0 NA Intergenic Intergenic -2389 ENSMUSG00000030042.15 ENSMUSG00000030042 ENSMUST00000140281 Pole4 protein_coding Interval_77478 chr17 89651762 89652639 + 0 NA Intergenic Intergenic 100326 ENSMUSG00000117511.1 ENSMUSG00000117511 ENSMUST00000234973 Gm50061 lincRNA Interval_117803 chr4 126309345 126310351 + 0 NA TTS (ENSMUSG00000056174.8) protein_coding-TTS (ENSMUSG00000056174.8) 9318 ENSMUSG00000056174.8 ENSMUSG00000056174 ENSMUST00000128435 Col8a2 protein_coding Interval_168460 chr9 81134762 81135474 + 0 NA intron (ENSMUSG00000097655.3, intron 1 of 3) lincRNA-intron (ENSMUSG00000097655.3, intron 1 of 3) -118160 ENSMUSG00000099085.1 ENSMUSG00000099085 ENSMUST00000184817 Gm8151 processed_pseudogene Interval_55352 chr14 84285170 84285630 + 0 NA Intergenic Intergenic -105910 ENSMUSG00000115227.1 ENSMUSG00000115227 ENSMUST00000227972 Gm49057 processed_pseudogene Interval_84093 chr19 7170972 7172782 + 0 NA intron (ENSMUSG00000036278.7, intron 3 of 10) protein_coding-intron (ENSMUSG00000036278.7, intron 3 of 10) 33898 ENSMUSG00000024767.11 ENSMUSG00000024767 ENSMUST00000123743 Otub1 protein_coding Interval_38825 chr12 83017857 83018594 + 0 NA intron (ENSMUSG00000021219.16, intron 3 of 16) protein_coding-intron (ENSMUSG00000021219.16, intron 2 of 14) -57068 ENSMUSG00000102249.1 ENSMUSG00000102249 ENSMUST00000193863 4930423C22Rik TEC Interval_133521 chr6 6135182 6137428 + 0 NA intron (ENSMUSG00000015112.15, intron 4 of 17) protein_coding-intron (ENSMUSG00000015112.15, intron 4 of 17) 37646 ENSMUSG00000015112.15 ENSMUSG00000015112 ENSMUST00000177698 Slc25a13 protein_coding Interval_33918 chr11 119395045 119396814 + 0 NA intron (ENSMUSG00000070327.14, intron 1 of 66) protein_coding-intron (ENSMUSG00000070327.14, intron 1 of 66) 5457 ENSMUSG00000088015.1 ENSMUSG00000088015 ENSMUST00000157390 Mir1932 miRNA Interval_58182 chr15 30424473 30424729 + 0 NA intron (ENSMUSG00000022240.10, intron 2 of 2) protein_coding-intron (ENSMUSG00000022240.10, intron 2 of 22) -4243 ENSMUSG00000115073.1 ENSMUSG00000115073 ENSMUST00000226263 Gm49283 TEC Interval_139548 chr6 100909607 100909805 + 0 NA Intergenic Intergenic 13450 ENSMUSG00000108074.1 ENSMUSG00000108074 ENSMUST00000205099 4930595O18Rik TEC Interval_133207 chr5 150562718 150563386 + 0 NA exon (ENSMUSG00000107178.1, exon 1 of 1) sense_intronic-exon (ENSMUSG00000107178.1, exon 1 of 1) 741 ENSMUSG00000107178.1 ENSMUSG00000107178 ENSMUST00000201648 Gm42531 sense_intronic Interval_134072 chr6 18711810 18712078 + 0 NA Intergenic Intergenic -15348 ENSMUSG00000095722.1 ENSMUSG00000095722 ENSMUST00000180301 Gm23648 snRNA Interval_17826 chr10 80289020 80289268 + 0 NA TTS (ENSMUSG00000069565.12) protein_coding-TTS (ENSMUSG00000069565.12) -3309 ENSMUSG00000063457.14 ENSMUSG00000063457 ENSMUST00000062674 Rps15 protein_coding Interval_148810 chr7 88357598 88357815 + 0 NA Intergenic Intergenic 13737 ENSMUSG00000077693.1 ENSMUSG00000077693 ENSMUST00000104505 Gm25345 snoRNA Interval_145499 chr7 35233737 35235538 + 0 NA Intergenic Intergenic 17402 ENSMUSG00000088307.1 ENSMUSG00000088307 ENSMUST00000157682 Gm24505 snoRNA Interval_49644 chr13 113755932 113756196 + 0 NA Intergenic Intergenic 6064 ENSMUSG00000114962.1 ENSMUSG00000114962 ENSMUST00000225360 Gm6343 processed_pseudogene Interval_165634 chr9 50554298 50555529 + 0 NA promoter-TSS (ENSMUSG00000039217.13) protein_coding-promoter-TSS (ENSMUSG00000039217.13) 268 ENSMUSG00000032066.9 ENSMUSG00000032066 ENSMUST00000119103 Bco2 protein_coding Interval_36445 chr12 44712309 44714412 + 0 NA Intergenic Intergenic -90698 ENSMUSG00000112823.1 ENSMUSG00000112823 ENSMUST00000217983 Gm6125 processed_pseudogene Interval_123012 chr5 28447221 28448599 + 0 NA Intergenic Intergenic -19074 ENSMUSG00000097726.7 ENSMUSG00000097726 ENSMUST00000181202 9530036O11Rik antisense Interval_119819 chr4 140196952 140197508 + 0 NA intron (ENSMUSG00000040972.8, intron 1 of 9) protein_coding-intron (ENSMUSG00000040972.8, intron 1 of 9) 49554 ENSMUSG00000040972.8 ENSMUSG00000040972 ENSMUST00000039331 Igsf21 protein_coding Interval_108309 chr3 123531547 123532781 + 0 NA intron (ENSMUSG00000027977.15, intron 12 of 13) protein_coding-intron (ENSMUSG00000027977.15, intron 11 of 12) -21490 ENSMUSG00000104670.1 ENSMUSG00000104670 ENSMUST00000196009 Gm9369 processed_pseudogene Interval_56020 chr14 104502453 104503168 + 0 NA exon (ENSMUSG00000022120.4, exon 5 of 5) protein_coding-exon (ENSMUSG00000022120.4, exon 5 of 5) 19823 ENSMUSG00000022120.4 ENSMUSG00000022120 ENSMUST00000228210 Rnf219 protein_coding Interval_27885 chr11 70625402 70626054 + 0 NA promoter-TSS (ENSMUSG00000085952.1) lincRNA-promoter-TSS (ENSMUSG00000085952.1) -167 ENSMUSG00000085952.1 ENSMUSG00000085952 ENSMUST00000151599 Gm12315 lincRNA Interval_15140 chr10 42856880 42857304 + 0 NA Intergenic Intergenic -3451 ENSMUSG00000044770.14 ENSMUSG00000044770 ENSMUST00000127675 Scml4 protein_coding Interval_170792 chr9 110813728 110814924 + 0 NA promoter-TSS (ENSMUSG00000032493.8) protein_coding-promoter-TSS (ENSMUSG00000032493.8) -125 ENSMUSG00000032493.8 ENSMUSG00000032493 ENSMUST00000196597 Prss44 protein_coding Interval_98574 chr2 153337263 153338252 + 0 NA Intergenic Intergenic -8072 ENSMUSG00000042548.14 ENSMUSG00000042548 ENSMUST00000138571 Asxl1 protein_coding Interval_101532 chr3 4156614 4156813 + 0 NA Intergenic Intergenic -55005 ENSMUSG00000091223.2 ENSMUSG00000091223 ENSMUST00000170943 Gm8775 processed_pseudogene Interval_26829 chr11 60913049 60914243 + 0 NA exon (ENSMUSG00000018931.3, exon 1 of 3) protein_coding-exon (ENSMUSG00000018931.3, exon 1 of 3) 1104 ENSMUSG00000018931.3 ENSMUSG00000018931 ENSMUST00000143800 Natd1 protein_coding Interval_105935 chr3 90161200 90162455 + 0 NA intron (ENSMUSG00000027939.11, intron 16 of 39) protein_coding-intron (ENSMUSG00000027939.11, intron 16 of 39) 35060 ENSMUSG00000104649.1 ENSMUSG00000104649 ENSMUST00000198020 Gm43712 unprocessed_pseudogene Interval_3607 chr1 59950350 59950639 + 0 NA TTS (ENSMUSG00000100901.1) processed_pseudogene-TTS (ENSMUSG00000100901.1) 1970 ENSMUSG00000100901.1 ENSMUSG00000100901 ENSMUST00000188150 Gm18829 processed_pseudogene Interval_6584 chr1 117601968 117602167 + 0 NA Intergenic Intergenic -1811 ENSMUSG00000107979.1 ENSMUSG00000107979 ENSMUST00000204773 Zfp813-ps lincRNA Interval_153324 chr7 143614585 143614960 + 0 NA intron (ENSMUSG00000045362.8, intron 5 of 7) protein_coding-intron (ENSMUSG00000045362.8, intron 5 of 7) -13252 ENSMUSG00000109251.1 ENSMUSG00000109251 ENSMUST00000207189 E230032D23Rik antisense Interval_6130 chr1 97769212 97770832 + 0 NA promoter-TSS (ENSMUSG00000026333.14) protein_coding-promoter-TSS (ENSMUSG00000026333.14) -7377 ENSMUSG00000026333.14 ENSMUSG00000026333 ENSMUST00000189031 Gin1 protein_coding Interval_32405 chr11 107376020 107377034 + 0 NA intron (ENSMUSG00000040430.18, intron 1 of 9) protein_coding-intron (ENSMUSG00000040430.18, intron 1 of 9) -10456 ENSMUSG00000087683.1 ENSMUSG00000087683 ENSMUST00000129139 Gm11712 antisense Interval_120076 chr4 141672188 141673067 + 0 NA Intergenic Intergenic 12972 ENSMUSG00000040715.12 ENSMUSG00000040715 ENSMUST00000105782 Rsc1a1 protein_coding Interval_112225 chr4 36806176 36806464 + 0 NA intron (ENSMUSG00000045083.14, intron 1 of 2) protein_coding-intron (ENSMUSG00000045083.14, intron 1 of 7) 50272 ENSMUSG00000087843.1 ENSMUSG00000087843 ENSMUST00000157218 Gm23314 snRNA Interval_170100 chr9 104431400 104431773 + 0 NA Intergenic Intergenic 5473 ENSMUSG00000089406.1 ENSMUSG00000089406 ENSMUST00000158781 Mir2136 miRNA Interval_36360 chr12 41989627 41989861 + 0 NA intron (ENSMUSG00000113370.1, intron 2 of 6) lincRNA-intron (ENSMUSG00000113370.1, intron 2 of 6) 27012 ENSMUSG00000113370.1 ENSMUSG00000113370 ENSMUST00000222917 Gm46348 lincRNA Interval_88645 chr2 8504500 8505053 + 0 NA Intergenic Intergenic -32392 ENSMUSG00000088574.1 ENSMUSG00000088574 ENSMUST00000157949 Gm24534 misc_RNA Interval_76048 chr17 74572888 74573938 + 0 NA intron (ENSMUSG00000024073.16, intron 7 of 72) protein_coding-intron (ENSMUSG00000024073.16, intron 7 of 72) 43706 ENSMUSG00000097546.1 ENSMUSG00000097546 ENSMUST00000181387 Gm26749 antisense Interval_170843 chr9 111100555 111100892 + 0 NA Intergenic Intergenic 25329 ENSMUSG00000088296.1 ENSMUSG00000088296 ENSMUST00000157671 Gm26409 snRNA Interval_32519 chr11 108078338 108078978 + 0 NA intron (ENSMUSG00000050965.14, intron 3 of 16) protein_coding-intron (ENSMUSG00000050965.14, intron 3 of 16) -65853 ENSMUSG00000050965.14 ENSMUSG00000050965 ENSMUST00000134725 Prkca protein_coding Interval_71588 chr17 24707110 24709138 + 0 NA promoter-TSS (ENSMUSG00000040688.16) protein_coding-promoter-TSS (ENSMUSG00000040688.16) -4788 ENSMUSG00000040688.16 ENSMUSG00000040688 ENSMUST00000142362 Tbl3 protein_coding Interval_38244 chr12 76605485 76606509 + 0 NA intron (ENSMUSG00000021061.15, intron 23 of 31) protein_coding-intron (ENSMUSG00000021061.15, intron 23 of 35) -21911 ENSMUSG00000021061.15 ENSMUSG00000021061 ENSMUST00000166101 Sptb protein_coding Interval_51980 chr14 34402564 34402799 + 0 NA intron (ENSMUSG00000041445.9, intron 6 of 6) protein_coding-intron (ENSMUSG00000041445.9, intron 6 of 6) 26960 ENSMUSG00000041445.9 ENSMUSG00000041445 ENSMUST00000227130 Mmrn2 protein_coding Interval_122079 chr5 16504093 16504796 + 0 NA Intergenic Intergenic 4739 ENSMUSG00000097941.1 ENSMUSG00000097941 ENSMUST00000183005 Gm8984 processed_pseudogene Interval_144230 chr7 23384213 23384472 + 0 NA Intergenic Intergenic -22654 ENSMUSG00000095946.1 ENSMUSG00000095946 ENSMUST00000180171 Gm25196 miRNA Interval_167392 chr9 68616836 68617963 + 0 NA Intergenic Intergenic -36492 ENSMUSG00000032238.17 ENSMUSG00000032238 ENSMUST00000113624 Rora protein_coding Interval_167748 chr9 72491476 72492600 + 0 NA promoter-TSS (ENSMUSG00000090626.9) protein_coding-promoter-TSS (ENSMUSG00000090626.9) -99 ENSMUSG00000090626.9 ENSMUSG00000090626 ENSMUST00000184624 Tex9 protein_coding Interval_107019 chr3 102995460 102996901 + 0 NA promoter-TSS (ENSMUSG00000027854.12) protein_coding-promoter-TSS (ENSMUSG00000027854.12) 4 ENSMUSG00000027854.12 ENSMUSG00000027854 ENSMUST00000196827 Sike1 protein_coding Interval_152394 chr7 132729266 132729729 + 0 NA intron (ENSMUSG00000030956.15, intron 3 of 3) protein_coding-intron (ENSMUSG00000030956.15, intron 4 of 4) -69613 ENSMUSG00000087348.1 ENSMUSG00000087348 ENSMUST00000132849 Gm15582 antisense Interval_99466 chr2 161629353 161630095 + 0 NA intron (ENSMUSG00000053141.16, intron 15 of 29) protein_coding-intron (ENSMUSG00000053141.16, intron 15 of 30) -115712 ENSMUSG00000100943.1 ENSMUSG00000100943 ENSMUST00000188874 Gm29229 processed_transcript Interval_111599 chr4 24322832 24323018 + 0 NA Intergenic Intergenic 84825 ENSMUSG00000083154.1 ENSMUSG00000083154 ENSMUST00000117711 Gm11892 processed_pseudogene Interval_49689 chr13 114002795 114003861 + 0 NA intron (ENSMUSG00000042348.10, intron 5 of 5) protein_coding-intron (ENSMUSG00000042348.10, intron 4 of 4) 117088 ENSMUSG00000114696.1 ENSMUSG00000114696 ENSMUST00000223997 Gm47479 TEC Interval_111652 chr4 25266249 25266810 + 0 NA intron (ENSMUSG00000040359.14, intron 8 of 18) protein_coding-intron (ENSMUSG00000040359.14, intron 8 of 17) 15231 ENSMUSG00000040359.14 ENSMUSG00000040359 ENSMUST00000132558 Ufl1 protein_coding Interval_159849 chr8 104353361 104354853 + 0 NA exon (ENSMUSG00000096188.1, exon 4 of 4) protein_coding-exon (ENSMUSG00000096188.1, exon 4 of 4) 9561 ENSMUSG00000110486.1 ENSMUSG00000110486 ENSMUST00000212110 Gm45877 sense_intronic Interval_33848 chr11 118971437 118971963 + 0 NA Intergenic Intergenic -16516 ENSMUSG00000046697.17 ENSMUSG00000046697 ENSMUST00000106273 Enpp7 protein_coding Interval_98053 chr2 147256528 147257007 + 0 NA intron (ENSMUSG00000086509.2, intron 1 of 5) antisense-intron (ENSMUSG00000086509.2, intron 1 of 5) -5982 ENSMUSG00000089316.1 ENSMUSG00000089316 ENSMUST00000158691 Gm22261 misc_RNA Interval_135735 chr6 46072097 46072370 + 0 NA promoter-TSS (ENSMUSG00000107782.1) TEC-promoter-TSS (ENSMUSG00000107782.1) -176 ENSMUSG00000107782.1 ENSMUSG00000107782 ENSMUST00000204405 Gm43888 TEC Interval_170631 chr9 109735041 109736164 + 0 NA intron (ENSMUSG00000059547.3, intron 4 of 9) protein_coding-intron (ENSMUSG00000059547.3, intron 4 of 9) 10487 ENSMUSG00000059547.3 ENSMUSG00000059547 ENSMUST00000071917 Fbxw26 protein_coding Interval_123508 chr5 33044808 33045624 + 0 NA Intergenic Intergenic -4769 ENSMUSG00000107046.1 ENSMUSG00000107046 ENSMUST00000201086 Gm43849 processed_pseudogene Interval_123358 chr5 31706858 31707060 + 0 NA intron (ENSMUSG00000052139.18, intron 2 of 10) protein_coding-intron (ENSMUSG00000052139.18, intron 3 of 13) -1437 ENSMUSG00000107151.1 ENSMUSG00000107151 ENSMUST00000201018 Gm43810 TEC Interval_158226 chr8 80119043 80120085 + 0 NA Intergenic Intergenic -7478 ENSMUSG00000082491.1 ENSMUSG00000082491 ENSMUST00000119768 Gm5909 processed_pseudogene Interval_30426 chr11 94295503 94296068 + 0 NA intron (ENSMUSG00000020863.15, intron 9 of 11) protein_coding-intron (ENSMUSG00000020863.15, intron 9 of 10) 2433 ENSMUSG00000020863.15 ENSMUSG00000020863 ENSMUST00000165620 Luc7l3 protein_coding Interval_75500 chr17 67512887 67513209 + 0 NA Intergenic Intergenic -38559 ENSMUSG00000087829.1 ENSMUSG00000087829 ENSMUST00000157204 Gm22277 misc_RNA Interval_153407 chr7 144473110 144474354 + 0 NA Intergenic Intergenic -3739 ENSMUSG00000085228.1 ENSMUSG00000085228 ENSMUST00000145297 Gm14376 sense_intronic Interval_121681 chr5 5165260 5166488 + 0 NA intron (ENSMUSG00000028926.15, intron 5 of 5) protein_coding-intron (ENSMUSG00000028926.15, intron 5 of 14) -7960 ENSMUSG00000105287.1 ENSMUSG00000105287 ENSMUST00000197090 Gm43577 sense_intronic Interval_152051 chr7 128582754 128584089 + 0 NA Intergenic Intergenic 9922 ENSMUSG00000108795.1 ENSMUSG00000108795 ENSMUST00000205396 Gm45121 lincRNA Interval_165664 chr9 50775086 50776506 + 0 NA promoter-TSS (ENSMUSG00000032059.13) protein_coding-promoter-TSS (ENSMUSG00000032059.13) 5734 ENSMUSG00000037845.14 ENSMUSG00000037845 ENSMUST00000177384 Fdxacb1 protein_coding Interval_45792 chr13 58112652 58113732 + 0 NA exon (ENSMUSG00000014164.15, exon 1 of 15) protein_coding-exon (ENSMUSG00000014164.15, exon 1 of 15) 400 ENSMUSG00000014164.15 ENSMUSG00000014164 ENSMUST00000160860 Klhl3 protein_coding Interval_13127 chr10 11845641 11846562 + 0 NA Intergenic Intergenic -4170 ENSMUSG00000111995.1 ENSMUSG00000111995 ENSMUST00000217771 Gm48697 lincRNA Interval_172850 chrX 52129218 52129967 + 0 NA intron (ENSMUSG00000031119.4, intron 1 of 8) protein_coding-intron (ENSMUSG00000031119.4, intron 1 of 8) 35660 ENSMUSG00000031119.4 ENSMUSG00000031119 ENSMUST00000033450 Gpc4 protein_coding Interval_39359 chr12 86893996 86895392 + 0 NA Intergenic Intergenic -9896 ENSMUSG00000034168.7 ENSMUSG00000034168 ENSMUST00000038422 Irf2bpl protein_coding Interval_6280 chr1 105295808 105296217 + 0 NA intron (ENSMUSG00000047496.6, intron 1 of 1) protein_coding-intron (ENSMUSG00000047496.6, intron 2 of 2) -25109 ENSMUSG00000099582.1 ENSMUSG00000099582 ENSMUST00000191422 Gm29014 processed_pseudogene Interval_170228 chr9 106320905 106322397 + 0 NA intron (ENSMUSG00000099879.1, intron 1 of 1) protein_coding-intron (ENSMUSG00000023345.17, intron 9 of 10) 14182 ENSMUSG00000099879.1 ENSMUSG00000099879 ENSMUST00000185808 Gm29123 antisense Interval_2565 chr1 40419741 40419964 + 0 NA Intergenic Intergenic -9718 ENSMUSG00000026069.15 ENSMUSG00000026069 ENSMUST00000053043 Il1rl1 protein_coding Interval_9560 chr1 159409692 159410058 + 0 NA Intergenic Intergenic -19085 ENSMUSG00000103389.1 ENSMUSG00000103389 ENSMUST00000193072 Gm37757 processed_pseudogene Interval_105794 chr3 89365152 89365968 + 0 NA promoter-TSS (ENSMUSG00000042672.15) protein_coding-promoter-TSS (ENSMUSG00000042672.15) 3585 ENSMUSG00000109293.1 ENSMUSG00000109293 ENSMUST00000208216 Dcst2 protein_coding Interval_69252 chr16 91694595 91695211 + 0 NA TTS (ENSMUSG00000058240.14) protein_coding-TTS (ENSMUSG00000058240.14) 6005 ENSMUSG00000085169.2 ENSMUSG00000085169 ENSMUST00000156242 Gm10785 antisense Interval_69875 chr16 97794038 97794892 + 0 NA TTS (ENSMUSG00000014039.18) protein_coding-TTS (ENSMUSG00000014039.18) 5124 ENSMUSG00000014039.18 ENSMUSG00000014039 ENSMUST00000135505 Prdm15 protein_coding Interval_52492 chr14 46960817 46961613 + 0 NA promoter-TSS (ENSMUSG00000089870.1) sense_intronic-promoter-TSS (ENSMUSG00000089870.1) -225 ENSMUSG00000089870.1 ENSMUSG00000089870 ENSMUST00000161397 Gm15562 sense_intronic Interval_27371 chr11 67030890 67031466 + 0 NA exon (ENSMUSG00000050270.12, exon 4 of 6) protein_coding-exon (ENSMUSG00000050270.12, exon 4 of 6) 6024 ENSMUSG00000050270.12 ENSMUSG00000050270 ENSMUST00000061786 Tmem220 protein_coding Interval_108311 chr3 123577155 123577448 + 0 NA promoter-TSS (ENSMUSG00000027977.15) protein_coding-promoter-TSS (ENSMUSG00000027977.15) -17172 ENSMUSG00000027977.15 ENSMUSG00000027977 ENSMUST00000132896 Ndst3 protein_coding Interval_39258 chr12 86266880 86267251 + 0 NA intron (ENSMUSG00000021254.9, intron 6 of 9) protein_coding-intron (ENSMUSG00000021254.9, intron 6 of 8) 5389 ENSMUSG00000021254.9 ENSMUSG00000021254 ENSMUST00000222299 Gpatch2l protein_coding Interval_128172 chr5 111481392 111482637 + 0 NA Intergenic Intergenic 58425 ENSMUSG00000106560.1 ENSMUSG00000106560 ENSMUST00000196957 Gm43119 TEC Interval_58137 chr15 28394352 28394698 + 0 NA intron (ENSMUSG00000022262.8, intron 58 of 78) protein_coding-intron (ENSMUSG00000022262.8, intron 58 of 78) 110666 ENSMUSG00000115473.1 ENSMUSG00000115473 ENSMUST00000228335 Gm49278 processed_pseudogene Interval_110228 chr3 154628057 154628848 + 0 NA Intergenic Intergenic 12568 ENSMUSG00000028199.18 ENSMUSG00000028199 ENSMUST00000195292 Cryz protein_coding Interval_48982 chr13 106715281 106716261 + 0 NA Intergenic Intergenic 45808 ENSMUSG00000114422.1 ENSMUSG00000114422 ENSMUST00000225713 Gm30411 lincRNA Interval_52437 chr14 46390298 46390792 + 0 NA promoter-TSS (ENSMUSG00000021835.15) protein_coding-promoter-TSS (ENSMUSG00000021835.15) 2992 ENSMUSG00000086746.2 ENSMUSG00000086746 ENSMUST00000228667 Gm15222 antisense Interval_28920 chr11 79286550 79287169 + 0 NA Intergenic Intergenic 10047 ENSMUSG00000055072.2 ENSMUSG00000055072 ENSMUST00000068448 Gm9964 TEC Interval_123765 chr5 35350806 35351668 + 0 NA Intergenic Intergenic -10316 ENSMUSG00000106762.3 ENSMUSG00000106762 ENSMUST00000201921 4930478P22Rik lincRNA Interval_56071 chr14 105301212 105301838 + 0 NA exon (ENSMUSG00000053253.16, exon 3 of 4) protein_coding-exon (ENSMUSG00000053253.16, exon 3 of 4) -8541 ENSMUSG00000086260.1 ENSMUSG00000086260 ENSMUST00000145241 Gm16259 processed_pseudogene Interval_151614 chr7 125305912 125306264 + 0 NA intron (ENSMUSG00000045928.2, intron 3 of 3) lincRNA-intron (ENSMUSG00000045928.2, intron 3 of 3) -12271 ENSMUSG00000104236.1 ENSMUSG00000104236 ENSMUST00000194425 4930533L02Rik TEC Interval_147516 chr7 67960256 67962351 + 0 NA intron (ENSMUSG00000005533.10, intron 1 of 20) protein_coding-intron (ENSMUSG00000005533.10, intron 1 of 20) -74718 ENSMUSG00000109152.1 ENSMUSG00000109152 ENSMUST00000208544 Gm44666 processed_pseudogene Interval_156248 chr8 46543697 46544001 + 0 NA Intergenic Intergenic -8189 ENSMUSG00000031629.14 ENSMUSG00000031629 ENSMUST00000136724 Cenpu protein_coding Interval_150842 chr7 115489642 115489895 + 0 NA exon (ENSMUSG00000051910.13, exon 15 of 17) protein_coding-exon (ENSMUSG00000051910.13, exon 15 of 17) 317495 ENSMUSG00000099211.1 ENSMUSG00000099211 ENSMUST00000183778 Gm27684 miRNA Interval_26433 chr11 57827395 57828168 + 0 NA TTS (ENSMUSG00000037335.13) protein_coding-TTS (ENSMUSG00000037335.13) 5037 ENSMUSG00000037335.13 ENSMUSG00000037335 ENSMUST00000108845 Hand1 protein_coding Interval_49480 chr13 112346627 112346876 + 0 NA intron (ENSMUSG00000049985.15, intron 6 of 7) protein_coding-intron (ENSMUSG00000049985.15, intron 5 of 10) 21094 ENSMUSG00000114536.1 ENSMUSG00000114536 ENSMUST00000224393 Gm48837 antisense Interval_91342 chr2 37925407 37925907 + 0 NA intron (ENSMUSG00000035392.17, intron 12 of 18) protein_coding-intron (ENSMUSG00000035392.17, intron 13 of 21) 93510 ENSMUSG00000107586.1 ENSMUSG00000107586 ENSMUST00000204461 Gm44283 TEC Interval_9209 chr1 155073099 155074088 + 0 NA intron (ENSMUSG00000096950.2, intron 3 of 6) lincRNA-intron (ENSMUSG00000096950.2, intron 3 of 6) 9673 ENSMUSG00000096950.2 ENSMUSG00000096950 ENSMUST00000181160 Gm9530 lincRNA Interval_136492 chr6 54923253 54923512 + 0 NA TTS (ENSMUSG00000038058.14) protein_coding-TTS (ENSMUSG00000038058.14) 16469 ENSMUSG00000038058.14 ENSMUSG00000038058 ENSMUST00000203837 Nod1 protein_coding Interval_5375 chr1 88125967 88126527 + 0 NA promoter-TSS (ENSMUSG00000084195.2) unprocessed_pseudogene-promoter-TSS (ENSMUSG00000084195.2) -529 ENSMUSG00000084195.2 ENSMUSG00000084195 ENSMUST00000239178 Gm15372 unprocessed_pseudogene Interval_43735 chr13 35857539 35857999 + 0 NA intron (ENSMUSG00000059288.14, intron 3 of 6) protein_coding-intron (ENSMUSG00000059288.14, intron 6 of 9) -47688 ENSMUSG00000114270.1 ENSMUSG00000114270 ENSMUST00000225277 Gm48746 lincRNA Interval_23256 chr11 20941375 20941832 + 0 NA Intergenic Intergenic -3902 ENSMUSG00000096061.1 ENSMUSG00000096061 ENSMUST00000178821 Gm23681 miRNA Interval_16303 chr10 62071460 62071840 + 0 NA exon (ENSMUSG00000046687.6, exon 1 of 1) processed_pseudogene-exon (ENSMUSG00000046687.6, exon 1 of 1) 527 ENSMUSG00000046687.6 ENSMUSG00000046687 ENSMUST00000053865 Gm5424 processed_pseudogene Interval_52473 chr14 46800585 46801558 + 0 NA Intergenic Intergenic 5080 ENSMUSG00000115041.1 ENSMUSG00000115041 ENSMUST00000228616 Gm48939 TEC Interval_139483 chr6 100473895 100475248 + 0 NA Intergenic Intergenic 20243 ENSMUSG00000087929.1 ENSMUSG00000087929 ENSMUST00000157304 Gm23234 snoRNA Interval_13288 chr10 14193226 14194095 + 0 NA Intergenic Intergenic -3355 ENSMUSG00000112266.1 ENSMUSG00000112266 ENSMUST00000218190 Gm48843 lincRNA Interval_67413 chr16 48430958 48431848 + 0 NA intron (ENSMUSG00000022652.7, intron 1 of 26) protein_coding-intron (ENSMUSG00000022652.7, intron 1 of 26) -18987 ENSMUSG00000110573.1 ENSMUSG00000110573 ENSMUST00000212197 Gm5485 protein_coding Interval_126796 chr5 92986464 92987430 + 0 NA Intergenic Intergenic -16884 ENSMUSG00000106930.1 ENSMUSG00000106930 ENSMUST00000200896 Gm6450 processed_pseudogene Interval_50178 chr14 8665583 8666757 + 0 NA promoter-TSS (ENSMUSG00000021747.12) protein_coding-promoter-TSS (ENSMUSG00000021747.12) 69 ENSMUSG00000021747.12 ENSMUSG00000021747 ENSMUST00000225744 4930452B06Rik protein_coding Interval_40334 chr12 103862535 103862729 + 0 NA intron (ENSMUSG00000066366.14, intron 1 of 5) protein_coding-intron (ENSMUSG00000066366.14, intron 1 of 5) 930 ENSMUSG00000066366.14 ENSMUSG00000066366 ENSMUST00000124717 Serpina1a protein_coding Interval_158376 chr8 83171404 83171643 + 0 NA intron (ENSMUSG00000031709.15, intron 1 of 20) protein_coding-intron (ENSMUSG00000031709.15, intron 1 of 17) -5353 ENSMUSG00000074228.3 ENSMUSG00000074228 ENSMUST00000238241 Gm10645 TEC Interval_63512 chr15 101567595 101567932 + 0 NA intron (ENSMUSG00000022986.5, intron 7 of 8) protein_coding-intron (ENSMUSG00000022986.5, intron 7 of 8) -2420 ENSMUSG00000106412.1 ENSMUSG00000106412 ENSMUST00000196179 Gm44460 miRNA Interval_137994 chr6 84043789 84045402 + 0 NA intron (ENSMUSG00000033788.15, intron 3 of 55) protein_coding-intron (ENSMUSG00000033788.15, intron 3 of 54) 13007 ENSMUSG00000108142.1 ENSMUSG00000108142 ENSMUST00000203282 Gm7498 processed_pseudogene Interval_77559 chr17 91565960 91567535 + 0 NA intron (ENSMUSG00000117417.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000087425.1, intron 1 of 1) 643 ENSMUSG00000117417.1 ENSMUSG00000117417 ENSMUST00000234155 Gm49991 lincRNA Interval_60721 chr15 76356302 76356912 + 0 NA exon (ENSMUSG00000109179.2, exon 5 of 24) protein_coding-exon (ENSMUSG00000109179.2, exon 5 of 24) 2175 ENSMUSG00000109179.2 ENSMUSG00000109179 ENSMUST00000208833 Gm35339 protein_coding Interval_18127 chr10 82838193 82839363 + 0 NA intron (ENSMUSG00000020250.10, intron 1 of 14) protein_coding-intron (ENSMUSG00000020250.10, intron 1 of 14) 13869 ENSMUSG00000112889.1 ENSMUSG00000112889 ENSMUST00000220118 Gm47073 TEC Interval_112715 chr4 44351236 44351510 + 0 NA intron (ENSMUSG00000035683.13, intron 16 of 17) protein_coding-intron (ENSMUSG00000035683.13, intron 16 of 17) -31549 ENSMUSG00000083803.1 ENSMUSG00000083803 ENSMUST00000121242 Gm12455 processed_pseudogene Interval_24779 chr11 37383466 37383767 + 0 NA Intergenic Intergenic -275373 ENSMUSG00000087388.1 ENSMUSG00000087388 ENSMUST00000131013 Gm12128 lincRNA Interval_117481 chr4 124035541 124036882 + 0 NA Intergenic Intergenic 109977 ENSMUSG00000082515.1 ENSMUSG00000082515 ENSMUST00000118389 Gm12902 processed_pseudogene Interval_38527 chr12 79890853 79891274 + 0 NA Intergenic Intergenic 34431 ENSMUSG00000112765.1 ENSMUSG00000112765 ENSMUST00000219857 9430078K24Rik lincRNA Interval_150958 chr7 116725536 116726545 + 0 NA Intergenic Intergenic -34555 ENSMUSG00000088234.1 ENSMUSG00000088234 ENSMUST00000157609 Gm25423 snRNA Interval_96740 chr2 127596081 127596516 + 0 NA TTS (ENSMUSG00000027374.12) protein_coding-TTS (ENSMUSG00000027374.12) 5857 ENSMUSG00000027374.12 ENSMUSG00000027374 ENSMUST00000129066 Mrps5 protein_coding Interval_45739 chr13 57527360 57528071 + 0 NA intron (ENSMUSG00000056222.15, intron 6 of 10) protein_coding-intron (ENSMUSG00000056222.15, intron 4 of 9) 251037 ENSMUSG00000114411.1 ENSMUSG00000114411 ENSMUST00000224461 Gm48176 processed_pseudogene Interval_123368 chr5 31904946 31905220 + 0 NA intron (ENSMUSG00000052139.18, intron 5 of 6) protein_coding-intron (ENSMUSG00000052139.18, intron 9 of 13) -21614 ENSMUSG00000107140.1 ENSMUSG00000107140 ENSMUST00000202862 Gm43811 TEC Interval_38231 chr12 76531540 76534836 + 0 NA promoter-TSS (ENSMUSG00000052609.9) protein_coding-promoter-TSS (ENSMUSG00000052609.9) 24 ENSMUSG00000092738.1 ENSMUSG00000092738 ENSMUST00000174997 Mir5135 miRNA Interval_144456 chr7 25267264 25268570 + 0 NA promoter-TSS (ENSMUSG00000005442.13) protein_coding-promoter-TSS (ENSMUSG00000005442.13) -17187 ENSMUSG00000040857.15 ENSMUSG00000040857 ENSMUST00000116343 Erf protein_coding Interval_108108 chr3 121542763 121543190 + 0 NA Intergenic Intergenic 11347 ENSMUSG00000097124.2 ENSMUSG00000097124 ENSMUST00000180804 A530020G20Rik antisense Interval_134338 chr6 25709268 25709763 + 0 NA Intergenic Intergenic -19723 ENSMUSG00000039904.9 ENSMUSG00000039904 ENSMUST00000054867 Gpr37 protein_coding Interval_113001 chr4 46721416 46721682 + 0 NA intron (ENSMUSG00000039809.10, intron 1 of 3) protein_coding-intron (ENSMUSG00000039809.10, intron 12 of 18) -71340 ENSMUSG00000039813.14 ENSMUSG00000039813 ENSMUST00000107750 Tbc1d2 protein_coding Interval_142163 chr6 137734574 137736287 + 0 NA exon (ENSMUSG00000030224.10, exon 1 of 10) protein_coding-exon (ENSMUSG00000030224.10, exon 1 of 10) -9610 ENSMUSG00000030224.10 ENSMUSG00000030224 ENSMUST00000137235 Strap protein_coding Interval_29503 chr11 84497801 84499042 + 0 NA intron (ENSMUSG00000018697.14, intron 5 of 8) protein_coding-intron (ENSMUSG00000018697.14, intron 5 of 12) 15101 ENSMUSG00000018697.14 ENSMUSG00000018697 ENSMUST00000148434 Aatf protein_coding Interval_27055 chr11 62589630 62589838 + 0 NA exon (ENSMUSG00000018507.16, exon 7 of 16) protein_coding-exon (ENSMUSG00000018507.16, exon 7 of 16) 8467 ENSMUSG00000018507.16 ENSMUSG00000018507 ENSMUST00000153486 Trpv2 protein_coding Interval_162482 chr9 3058227 3058509 + 0 NA Intergenic Intergenic -19625 ENSMUSG00000106183.1 ENSMUSG00000106183 ENSMUST00000195989 Mir101c miRNA Interval_146103 chr7 43925686 43926407 + 0 NA Intergenic Intergenic -7747 ENSMUSG00000055193.4 ENSMUSG00000055193 ENSMUST00000206955 Klk15 protein_coding Interval_153109 chr7 141413465 141414786 + 0 NA promoter-TSS (ENSMUSG00000051007.15) protein_coding-promoter-TSS (ENSMUSG00000051007.15) -4207 ENSMUSG00000051007.15 ENSMUSG00000051007 ENSMUST00000142852 Gatd1 protein_coding Interval_7632 chr1 132655622 132656313 + 0 NA intron (ENSMUSG00000026442.14, intron 1 of 19) protein_coding-intron (ENSMUSG00000026442.14, intron 2 of 26) -31455 ENSMUSG00000026442.14 ENSMUSG00000026442 ENSMUST00000189219 Nfasc protein_coding Interval_80989 chr18 52410022 52410311 + 0 NA Intergenic Intergenic -55556 ENSMUSG00000024528.8 ENSMUSG00000024528 ENSMUST00000237434 Srfbp1 protein_coding Interval_47705 chr13 91495387 91495987 + 0 NA intron (ENSMUSG00000003992.15, intron 1 of 10) protein_coding-intron (ENSMUSG00000003992.15, intron 1 of 16) 34517 ENSMUSG00000003992.15 ENSMUSG00000003992 ENSMUST00000137658 Ssbp2 protein_coding Interval_51630 chr14 30906230 30906473 + 0 NA Intergenic Intergenic 7190 ENSMUSG00000021922.17 ENSMUSG00000021922 ENSMUST00000227899 Itih4 protein_coding Interval_108884 chr3 132979476 132980330 + 0 NA Intergenic Intergenic 40033 ENSMUSG00000089431.1 ENSMUSG00000089431 ENSMUST00000158806 Gm23196 snRNA Interval_9829 chr1 162732439 162732883 + 0 NA intron (ENSMUSG00000040225.15, intron 1 of 5) protein_coding-intron (ENSMUSG00000040225.15, intron 1 of 34) -1940 ENSMUSG00000040225.15 ENSMUSG00000040225 ENSMUST00000183286 Prrc2c protein_coding Interval_91112 chr2 35173829 35174444 + 0 NA intron (ENSMUSG00000057110.15, intron 39 of 42) protein_coding-intron (ENSMUSG00000057110.15, intron 39 of 43) 26840 ENSMUSG00000026878.17 ENSMUSG00000026878 ENSMUST00000126224 Rab14 protein_coding Interval_60711 chr15 76296528 76297342 + 0 NA TTS (ENSMUSG00000071724.5) protein_coding-TTS (ENSMUSG00000071724.5) 1967 ENSMUSG00000071724.5 ENSMUSG00000071724 ENSMUST00000167433 Smpd5 protein_coding Interval_119377 chr4 137315847 137317032 + 0 NA Intergenic Intergenic -9120 ENSMUSG00000089199.1 ENSMUSG00000089199 ENSMUST00000158574 Gm25772 snRNA Interval_45330 chr13 54474300 54475075 + 0 NA Intergenic Intergenic -5899 ENSMUSG00000025872.5 ENSMUSG00000025872 ENSMUST00000135404 Thoc3 protein_coding Interval_126729 chr5 92363182 92363768 + 0 NA promoter-TSS (ENSMUSG00000060183.6) polymorphic_pseudogene-promoter-TSS (ENSMUSG00000060183.6) -429 ENSMUSG00000082068.1 ENSMUSG00000082068 ENSMUST00000120958 Gm2673 processed_pseudogene Interval_85830 chr19 32223936 32224180 + 0 NA intron (ENSMUSG00000040451.18, intron 2 of 10) protein_coding-intron (ENSMUSG00000040451.18, intron 4 of 9) -14785 ENSMUSG00000118064.1 ENSMUSG00000118064 ENSMUST00000235377 Gm50210 sense_intronic Interval_131081 chr5 134970601 134970893 + 0 NA Intergenic Intergenic -15467 ENSMUSG00000070473.4 ENSMUSG00000070473 ENSMUST00000094245 Cldn3 protein_coding Interval_98522 chr2 152962240 152963509 + 0 NA intron (ENSMUSG00000074673.15, intron 1 of 11) protein_coding-intron (ENSMUSG00000074673.15, intron 1 of 14) -9414 ENSMUSG00000074673.15 ENSMUSG00000074673 ENSMUST00000150218 Ttll9 protein_coding Interval_21294 chr10 127703414 127703830 + 0 NA Intergenic Intergenic -15706 ENSMUSG00000025401.9 ENSMUSG00000025401 ENSMUST00000219882 Myo1a protein_coding Interval_169136 chr9 93917989 93918533 + 0 NA Intergenic Intergenic -221201 ENSMUSG00000111352.1 ENSMUSG00000111352 ENSMUST00000217499 Gm5369 processed_pseudogene Interval_165048 chr9 44129693 44130797 + 0 NA intron (ENSMUSG00000097617.2, intron 1 of 1) antisense-intron (ENSMUSG00000097617.2, intron 1 of 1) 4240 ENSMUSG00000097617.2 ENSMUSG00000097617 ENSMUST00000180670 Gm10687 antisense Interval_128604 chr5 114252830 114253143 + 0 NA Intergenic Intergenic -15061 ENSMUSG00000084243.1 ENSMUSG00000084243 ENSMUST00000119639 Gm13784 processed_pseudogene Interval_100910 chr2 173290278 173291692 + 0 NA Intergenic Intergenic 14287 ENSMUSG00000087600.1 ENSMUSG00000087600 ENSMUST00000150185 Pmepa1os antisense Interval_152673 chr7 136081016 136081219 + 0 NA Intergenic Intergenic 92179 ENSMUSG00000110396.1 ENSMUSG00000110396 ENSMUST00000209653 Gm36737 lincRNA Interval_118961 chr4 134730000 134730652 + 0 NA Intergenic Intergenic 19781 ENSMUSG00000037295.7 ENSMUSG00000037295 ENSMUST00000140678 Ldlrap1 protein_coding Interval_157475 chr8 70597711 70598988 + 0 NA promoter-TSS (ENSMUSG00000070003.7) protein_coding-promoter-TSS (ENSMUSG00000070003.7) 2382 ENSMUSG00000019139.10 ENSMUSG00000019139 ENSMUST00000211773 Isyna1 protein_coding Interval_149725 chr7 100953497 100953703 + 0 NA intron (ENSMUSG00000048779.5, intron 1 of 1) protein_coding-intron (ENSMUSG00000048779.5, intron 1 of 2) 2783 ENSMUSG00000109132.1 ENSMUSG00000109132 ENSMUST00000208262 Gm44545 TEC Interval_19168 chr10 95262119 95262959 + 0 NA intron (ENSMUSG00000045867.10, intron 2 of 2) protein_coding-intron (ENSMUSG00000045867.10, intron 2 of 2) 52314 ENSMUSG00000112744.1 ENSMUSG00000112744 ENSMUST00000219461 Gm48880 TEC Interval_164292 chr9 35053025 35053390 + 0 NA TTS (ENSMUSG00000032038.7) protein_coding-TTS (ENSMUSG00000032038.7) 19424 ENSMUSG00000032038.7 ENSMUSG00000032038 ENSMUST00000215463 St3gal4 protein_coding Interval_140868 chr6 122471196 122472748 + 0 NA TTS (ENSMUSG00000040649.15) protein_coding-TTS (ENSMUSG00000040649.15) 14467 ENSMUSG00000040649.15 ENSMUSG00000040649 ENSMUST00000204045 Rimklb protein_coding Interval_133215 chr5 150624259 150624515 + 0 NA intron (ENSMUSG00000029655.17, intron 3 of 3) protein_coding-intron (ENSMUSG00000029655.17, intron 3 of 3) -17504 ENSMUSG00000107096.3 ENSMUSG00000107096 ENSMUST00000202860 Gm43597 lincRNA Interval_102612 chr3 28402442 28402757 + 0 NA intron (ENSMUSG00000027692.16, intron 2 of 30) protein_coding-intron (ENSMUSG00000027692.16, intron 2 of 30) -17344 ENSMUSG00000092990.1 ENSMUSG00000092990 ENSMUST00000175249 Mir466q miRNA Interval_118620 chr4 132809733 132810052 + 0 NA Intergenic Intergenic -7638 ENSMUSG00000081647.1 ENSMUSG00000081647 ENSMUST00000121181 Gm13022 processed_pseudogene Interval_109475 chr3 142772024 142772472 + 0 NA TTS (ENSMUSG00000065130.1) snRNA-TTS (ENSMUSG00000065130.1) 828 ENSMUSG00000065130.1 ENSMUSG00000065130 ENSMUST00000083196 Gm24457 snRNA Interval_52364 chr14 45422752 45423524 + 0 NA TTS (ENSMUSG00000053205.9) protein_coding-TTS (ENSMUSG00000053205.9) -18178 ENSMUSG00000096383.1 ENSMUSG00000096383 ENSMUST00000179366 Gm25353 miRNA Interval_162935 chr9 13547181 13547421 + 0 NA intron (ENSMUSG00000031925.17, intron 1 of 4) protein_coding-intron (ENSMUSG00000031925.17, intron 1 of 4) 27365 ENSMUSG00000111223.1 ENSMUSG00000111223 ENSMUST00000213741 Gm47089 TEC Interval_158483 chr8 83987017 83988747 + 0 NA intron (ENSMUSG00000005469.10, intron 4 of 9) protein_coding-intron (ENSMUSG00000005469.10, intron 4 of 9) -10542 ENSMUSG00000079003.3 ENSMUSG00000079003 ENSMUST00000209606 Samd1 protein_coding Interval_100750 chr2 172329049 172329643 + 0 NA intron (ENSMUSG00000085905.1, intron 1 of 4) antisense-intron (ENSMUSG00000085905.1, intron 1 of 4) 5012 ENSMUSG00000085905.1 ENSMUSG00000085905 ENSMUST00000136315 Gm14273 antisense Interval_148963 chr7 90450006 90450327 + 0 NA TTS (ENSMUSG00000030615.12) protein_coding-TTS (ENSMUSG00000030615.12) 5983 ENSMUSG00000051451.6 ENSMUSG00000051451 ENSMUST00000146291 Crebzf protein_coding Interval_103918 chr3 54989480 54990771 + 0 NA Intergenic Intergenic 64912 ENSMUSG00000027793.6 ENSMUSG00000027793 ENSMUST00000199352 Ccna1 protein_coding Interval_73440 chr17 37270053 37271245 + 0 NA exon (ENSMUSG00000016206.6, exon 2 of 8) protein_coding-exon (ENSMUSG00000016206.6, exon 2 of 8) 429 ENSMUSG00000016206.6 ENSMUSG00000016206 ENSMUST00000038580 H2-M3 protein_coding Interval_46836 chr13 72035641 72036430 + 0 NA Intergenic Intergenic -75319 ENSMUSG00000060969.9 ENSMUSG00000060969 ENSMUST00000223460 Irx1 protein_coding Interval_50771 chr14 19733442 19734076 + 0 NA Intergenic Intergenic -17525 ENSMUSG00000021806.4 ENSMUSG00000021806 ENSMUST00000224057 Nid2 protein_coding Interval_139402 chr6 99864768 99865289 + 0 NA Intergenic Intergenic 13306 ENSMUSG00000084319.3 ENSMUSG00000084319 ENSMUST00000121046 Tpt1-ps3 processed_pseudogene Interval_133830 chr6 12998886 12999589 + 0 NA Intergenic Intergenic 57360 ENSMUSG00000098052.1 ENSMUSG00000098052 ENSMUST00000182201 Gm5300 processed_pseudogene Interval_133665 chr6 8258543 8259954 + 0 NA promoter-TSS (ENSMUSG00000012483.4) protein_coding-promoter-TSS (ENSMUSG00000012483.4) -108 ENSMUSG00000012483.4 ENSMUSG00000012483 ENSMUST00000159594 Rpa3 protein_coding Interval_87745 chr19 55588462 55590035 + 0 NA intron (ENSMUSG00000024983.10, intron 8 of 8) protein_coding-intron (ENSMUSG00000024983.10, intron 7 of 7) -153016 ENSMUSG00000024985.20 ENSMUSG00000024985 ENSMUST00000148666 Tcf7l2 protein_coding Interval_115868 chr4 105338843 105339349 + 0 NA Intergenic Intergenic 35850 ENSMUSG00000081819.1 ENSMUSG00000081819 ENSMUST00000118507 Gm12722 processed_pseudogene Interval_147932 chr7 75738742 75739669 + 0 NA intron (ENSMUSG00000066406.16, intron 30 of 37) protein_coding-intron (ENSMUSG00000066406.16, intron 29 of 36) 18163 ENSMUSG00000076961.1 ENSMUSG00000076961 ENSMUST00000103773 Gm23251 miRNA Interval_63230 chr15 99839661 99840364 + 0 NA intron (ENSMUSG00000023022.14, intron 2 of 3) protein_coding-intron (ENSMUSG00000023022.14, intron 2 of 10) 20992 ENSMUSG00000090500.1 ENSMUSG00000090500 ENSMUST00000169887 Gm17057 antisense Interval_25281 chr11 46090225 46091577 + 0 NA intron (ENSMUSG00000011256.16, intron 3 of 22) protein_coding-intron (ENSMUSG00000011256.16, intron 3 of 22) -11369 ENSMUSG00000098942.1 ENSMUSG00000098942 ENSMUST00000184230 Mir8100 miRNA Interval_7881 chr1 134343729 134345099 + 0 NA Intergenic Intergenic 17527 ENSMUSG00000042305.12 ENSMUSG00000042305 ENSMUST00000185903 Tmem183a protein_coding Interval_139424 chr6 100074543 100075827 + 0 NA Intergenic Intergenic 68629 ENSMUSG00000107558.1 ENSMUSG00000107558 ENSMUST00000204605 2010109P13Rik TEC Interval_118965 chr4 134749177 134750205 + 0 NA intron (ENSMUSG00000037295.7, intron 1 of 3) protein_coding-intron (ENSMUSG00000037295.7, intron 6 of 8) 416 ENSMUSG00000037295.7 ENSMUSG00000037295 ENSMUST00000140678 Ldlrap1 protein_coding Interval_89456 chr2 20763751 20763962 + 0 NA intron (ENSMUSG00000036617.17, intron 3 of 7) protein_coding-intron (ENSMUSG00000036617.17, intron 8 of 18) -50622 ENSMUSG00000086418.1 ENSMUSG00000086418 ENSMUST00000137186 Gm13362 antisense Interval_100782 chr2 172501532 172502334 + 0 NA Intergenic Intergenic 7758 ENSMUSG00000081344.5 ENSMUSG00000081344 ENSMUST00000121320 Gm14303 processed_pseudogene Interval_173964 chrX 117298139 117300262 + 0 NA Intergenic Intergenic 11308 ENSMUSG00000080852.1 ENSMUSG00000080852 ENSMUST00000118153 Gm14918 processed_pseudogene Interval_142729 chr6 145188290 145189098 + 0 NA intron (ENSMUSG00000043541.16, intron 9 of 16) protein_coding-intron (ENSMUSG00000043541.16, intron 9 of 15) 6419 ENSMUSG00000086863.1 ENSMUSG00000086863 ENSMUST00000141307 Gm15543 antisense Interval_33394 chr11 116329155 116330472 + 0 NA TTS (ENSMUSG00000034227.7) protein_coding-TTS (ENSMUSG00000034227.7) -3096 ENSMUSG00000064588.1 ENSMUSG00000064588 ENSMUST00000082654 n-R5s74 rRNA Interval_141605 chr6 130967353 130967653 + 0 NA Intergenic Intergenic 13003 ENSMUSG00000107587.1 ENSMUSG00000107587 ENSMUST00000204749 Gm44989 processed_pseudogene Interval_27148 chr11 63360041 63360309 + 0 NA Intergenic Intergenic -46864 ENSMUSG00000081600.3 ENSMUSG00000081600 ENSMUST00000119246 Gm12286 processed_pseudogene Interval_99781 chr2 164874008 164874842 + 0 NA Intergenic Intergenic -4879 ENSMUSG00000039849.6 ENSMUSG00000039849 ENSMUST00000130213 Pcif1 protein_coding Interval_65162 chr16 20282642 20282964 + 0 NA TTS (ENSMUSG00000033918.16) protein_coding-TTS (ENSMUSG00000033918.16) 19576 ENSMUSG00000033918.16 ENSMUSG00000033918 ENSMUST00000153275 Parl protein_coding Interval_106667 chr3 98312698 98313911 + 0 NA exon (ENSMUSG00000053398.11, exon 12 of 12) protein_coding-exon (ENSMUSG00000053398.11, exon 12 of 12) 20266 ENSMUSG00000053398.11 ENSMUSG00000053398 ENSMUST00000148488 Phgdh protein_coding Interval_35489 chr12 23009367 23010787 + 0 NA promoter-TSS (ENSMUSG00000073164.11) lincRNA-promoter-TSS (ENSMUSG00000073164.11) -110 ENSMUSG00000113552.1 ENSMUSG00000113552 ENSMUST00000220625 Gm48046 processed_pseudogene Interval_102037 chr3 15953231 15953611 + 0 NA intron (ENSMUSG00000078780.7, intron 3 of 4) protein_coding-intron (ENSMUSG00000078780.7, intron 3 of 3) -10588 ENSMUSG00000103769.1 ENSMUSG00000103769 ENSMUST00000194510 Gm7343 processed_pseudogene Interval_48202 chr13 97155944 97156164 + 0 NA TTS (ENSMUSG00000021666.16) protein_coding-TTS (ENSMUSG00000021666.16) 18046 ENSMUSG00000021666.16 ENSMUSG00000021666 ENSMUST00000159321 Gfm2 protein_coding Interval_33708 chr11 118012649 118012984 + 0 NA exon (ENSMUSG00000017715.11, exon 1 of 3) protein_coding-exon (ENSMUSG00000017715.11, exon 1 of 3) 473 ENSMUSG00000017715.11 ENSMUSG00000017715 ENSMUST00000155507 Pgs1 protein_coding Interval_47872 chr13 94038650 94039182 + 0 NA Intergenic Intergenic -14927 ENSMUSG00000114174.1 ENSMUSG00000114174 ENSMUST00000223240 Cycs-ps3 processed_pseudogene Interval_133222 chr5 150654336 150654679 + 0 NA intron (ENSMUSG00000029655.17, intron 1 of 2) protein_coding-intron (ENSMUSG00000029655.17, intron 2 of 5) 11676 ENSMUSG00000029655.17 ENSMUSG00000029655 ENSMUST00000201390 N4bp2l2 protein_coding Interval_77035 chr17 85848185 85848512 + 0 NA Intergenic Intergenic -24304 ENSMUSG00000100345.1 ENSMUSG00000100345 ENSMUST00000186162 Gm29418 lincRNA Interval_53669 chr14 60761782 60762354 + 0 NA exon (ENSMUSG00000021990.16, exon 13 of 13) protein_coding-exon (ENSMUSG00000021990.16, exon 13 of 13) -6066 ENSMUSG00000071347.3 ENSMUSG00000071347 ENSMUST00000025940 C1qtnf9 protein_coding Interval_9930 chr1 164184238 164185109 + 0 NA intron (ENSMUSG00000026579.8, intron 9 of 24) protein_coding-intron (ENSMUSG00000026579.8, intron 9 of 24) 18094 ENSMUSG00000089790.1 ENSMUSG00000089790 ENSMUST00000162889 Gm16588 processed_pseudogene Interval_85088 chr19 22700868 22701942 + 0 NA intron (ENSMUSG00000052387.16, intron 3 of 24) protein_coding-intron (ENSMUSG00000052387.16, intron 3 of 26) -49200 ENSMUSG00000065507.3 ENSMUSG00000065507 ENSMUST00000083573 Mir204 miRNA Interval_136710 chr6 58298093 58298928 + 0 NA Intergenic Intergenic -3039 ENSMUSG00000091734.2 ENSMUSG00000091734 ENSMUST00000168416 Vmn1r29 protein_coding Interval_160538 chr8 110499930 110500800 + 0 NA intron (ENSMUSG00000059854.8, intron 29 of 86) protein_coding-intron (ENSMUSG00000059854.8, intron 29 of 86) 1380 ENSMUSG00000105131.1 ENSMUSG00000105131 ENSMUST00000197243 Gm47306 miRNA Interval_139078 chr6 94817344 94817550 + 0 NA Intergenic Intergenic -3083 ENSMUSG00000097943.1 ENSMUSG00000097943 ENSMUST00000183288 Gm7833 processed_pseudogene Interval_62354 chr15 90958143 90958359 + 0 NA exon (ENSMUSG00000116113.1, exon 1 of 1) processed_pseudogene-exon (ENSMUSG00000116113.1, exon 1 of 1) 255 ENSMUSG00000116113.1 ENSMUSG00000116113 ENSMUST00000229864 Gm49545 processed_pseudogene Interval_147985 chr7 76344014 76344737 + 0 NA intron (ENSMUSG00000025754.11, intron 5 of 22) protein_coding-intron (ENSMUSG00000025754.11, intron 5 of 22) -98437 ENSMUSG00000098009.1 ENSMUSG00000098009 ENSMUST00000182353 Gm5597 processed_pseudogene Interval_141987 chr6 136384527 136385724 + 0 NA TTS (ENSMUSG00000083916.2) processed_pseudogene-TTS (ENSMUSG00000083916.2) 1397 ENSMUSG00000083916.2 ENSMUSG00000083916 ENSMUST00000118247 Gm15476 processed_pseudogene Interval_13672 chr10 20914403 20914812 + 0 NA Intergenic Intergenic -35634 ENSMUSG00000111177.1 ENSMUSG00000111177 ENSMUST00000213102 Rps2-ps3 processed_pseudogene Interval_1717 chr1 32270145 32270403 + 0 NA intron (ENSMUSG00000026058.11, intron 2 of 2) protein_coding-intron (ENSMUSG00000026058.11, intron 2 of 8) -57035 ENSMUSG00000064688.1 ENSMUSG00000064688 ENSMUST00000082754 Gm25814 snRNA Interval_125882 chr5 75368530 75369749 + 0 NA Intergenic Intergenic 3006 ENSMUSG00000088210.1 ENSMUSG00000088210 ENSMUST00000157585 Gm22084 snRNA Interval_50797 chr14 19910530 19911775 + 0 NA intron (ENSMUSG00000043004.13, intron 1 of 2) protein_coding-intron (ENSMUSG00000043004.13, intron 4 of 5) 44172 ENSMUSG00000114436.1 ENSMUSG00000114436 ENSMUST00000224546 Gm48283 lincRNA Interval_4624 chr1 75505234 75506778 + 0 NA promoter-TSS (ENSMUSG00000026211.17) protein_coding-promoter-TSS (ENSMUSG00000026211.17) -1071 ENSMUSG00000032968.4 ENSMUSG00000032968 ENSMUST00000037330 Inha protein_coding Interval_45640 chr13 56430878 56431067 + 0 NA intron (ENSMUSG00000110477.1, intron 3 of 3) protein_coding-intron (ENSMUSG00000110477.1, intron 3 of 3) 4378 ENSMUSG00000110477.1 ENSMUSG00000110477 ENSMUST00000212844 Gm3045 protein_coding Interval_37982 chr12 73574408 73575153 + 0 NA Intergenic Intergenic -10016 ENSMUSG00000021108.18 ENSMUSG00000021108 ENSMUST00000220898 Prkch protein_coding Interval_146624 chr7 48788591 48789600 + 0 NA promoter-TSS (ENSMUSG00000030471.17) protein_coding-promoter-TSS (ENSMUSG00000030471.17) 63 ENSMUSG00000030471.17 ENSMUSG00000030471 ENSMUST00000139125 Zdhhc13 protein_coding Interval_67089 chr16 42813481 42813729 + 0 NA intron (ENSMUSG00000075070.6, intron 1 of 1) lincRNA-intron (ENSMUSG00000075070.6, intron 1 of 1) 62135 ENSMUSG00000075070.6 ENSMUSG00000075070 ENSMUST00000130331 4932412D23Rik lincRNA Interval_38724 chr12 81618871 81619835 + 0 NA Intergenic Intergenic -11896 ENSMUSG00000042734.6 ENSMUSG00000042734 ENSMUST00000036116 Ttc9 protein_coding Interval_12237 chr1 191048034 191048268 + 0 NA intron (ENSMUSG00000026632.17, intron 9 of 9) protein_coding-intron (ENSMUSG00000026632.17, intron 9 of 9) 11512 ENSMUSG00000057072.11 ENSMUSG00000057072 ENSMUST00000077889 Spata45 protein_coding Interval_13074 chr10 11156994 11157492 + 0 NA intron (ENSMUSG00000090112.8, intron 4 of 20) protein_coding-intron (ENSMUSG00000090112.8, intron 4 of 29) -47776 ENSMUSG00000090112.8 ENSMUSG00000090112 ENSMUST00000161910 Shprh protein_coding Interval_31611 chr11 101695556 101697047 + 0 NA Intergenic Intergenic 30760 ENSMUSG00000034936.2 ENSMUSG00000034936 ENSMUST00000039388 Arl4d protein_coding Interval_35344 chr12 20884050 20884446 + 0 NA intron (ENSMUSG00000085642.8, intron 1 of 1) transcribed_unprocessed_pseudogene-intron (ENSMUSG00000085642.8, intron 1 of 1) -7177 ENSMUSG00000085642.8 ENSMUSG00000085642 ENSMUST00000127917 3110053B16Rik transcribed_unprocessed_pseudogene Interval_145252 chr7 30955540 30958771 + 0 NA promoter-TSS (ENSMUSG00000058239.13) protein_coding-promoter-TSS (ENSMUSG00000058239.13) 246 ENSMUSG00000097750.2 ENSMUSG00000097750 ENSMUST00000181395 Gm4673 antisense Interval_21878 chr11 4906144 4906604 + 0 NA intron (ENSMUSG00000034274.11, intron 3 of 6) protein_coding-intron (ENSMUSG00000034274.11, intron 7 of 19) -8932 ENSMUSG00000034274.11 ENSMUSG00000034274 ENSMUST00000155872 Thoc5 protein_coding Interval_18600 chr10 88345986 88347033 + 0 NA intron (ENSMUSG00000020057.2, intron 2 of 3) protein_coding-intron (ENSMUSG00000020057.2, intron 1 of 6) 10487 ENSMUSG00000020057.2 ENSMUSG00000020057 ENSMUST00000138159 Dram1 protein_coding Interval_94065 chr2 83610700 83610885 + 0 NA Intergenic Intergenic -45828 ENSMUSG00000027091.14 ENSMUSG00000027091 ENSMUST00000134789 Zc3h15 protein_coding Interval_140385 chr6 117738507 117739401 + 0 NA intron (ENSMUSG00000099869.6, intron 2 of 4) lincRNA-intron (ENSMUSG00000099869.6, intron 2 of 3) -21691 ENSMUSG00000099869.6 ENSMUSG00000099869 ENSMUST00000187642 1700030F04Rik lincRNA Interval_101192 chr2 179253806 179254296 + 0 NA Intergenic Intergenic 13561 ENSMUSG00000081481.1 ENSMUSG00000081481 ENSMUST00000118528 Gm14293 processed_pseudogene Interval_105066 chr3 80927004 80927699 + 0 NA Intergenic Intergenic -15262 ENSMUSG00000028020.16 ENSMUSG00000028020 ENSMUST00000132330 Glrb protein_coding Interval_103648 chr3 51389002 51389236 + 0 NA exon (ENSMUSG00000037161.14, exon 4 of 4) protein_coding-exon (ENSMUSG00000037161.14, exon 4 of 4) 7384 ENSMUSG00000037161.14 ENSMUSG00000037161 ENSMUST00000145938 Mgarp protein_coding Interval_77763 chr18 3336701 3338064 + 0 NA promoter-TSS (ENSMUSG00000063889.16) protein_coding-promoter-TSS (ENSMUSG00000063889.16) 207 ENSMUSG00000063889.16 ENSMUSG00000063889 ENSMUST00000132334 Crem protein_coding Interval_149611 chr7 100029294 100030109 + 0 NA intron (ENSMUSG00000030732.13, intron 5 of 6) protein_coding-intron (ENSMUSG00000030732.13, intron 9 of 10) 23529 ENSMUSG00000030732.13 ENSMUSG00000030732 ENSMUST00000144808 Chrdl2 protein_coding Interval_124946 chr5 61339379 61340489 + 0 NA Intergenic Intergenic -1201 ENSMUSG00000106370.2 ENSMUSG00000106370 ENSMUST00000198954 Gm43382 processed_pseudogene Interval_28029 chr11 72354749 72356311 + 0 NA intron (ENSMUSG00000020799.16, intron 3 of 7) protein_coding-intron (ENSMUSG00000020799.16, intron 3 of 7) 6343 ENSMUSG00000020799.16 ENSMUSG00000020799 ENSMUST00000021155 Tekt1 protein_coding Interval_30673 chr11 95810734 95810990 + 0 NA intron (ENSMUSG00000075595.9, intron 5 of 6) protein_coding-intron (ENSMUSG00000075595.9, intron 5 of 6) -19901 ENSMUSG00000050860.6 ENSMUSG00000050860 ENSMUST00000176538 Phospho1 protein_coding Interval_95965 chr2 118730562 118730873 + 0 NA Intergenic Intergenic -2358 ENSMUSG00000040061.17 ENSMUSG00000040061 ENSMUST00000006415 Plcb2 protein_coding Interval_95479 chr2 109959718 109959934 + 0 NA intron (ENSMUSG00000050199.13, intron 1 of 16) protein_coding-intron (ENSMUSG00000050199.13, intron 1 of 17) -15716 ENSMUSG00000050199.13 ENSMUSG00000050199 ENSMUST00000142869 Lgr4 protein_coding Interval_4790 chr1 78702550 78703519 + 0 NA intron (ENSMUSG00000032883.15, intron 12 of 14) protein_coding-intron (ENSMUSG00000032883.15, intron 13 of 15) 12771 ENSMUSG00000032883.15 ENSMUSG00000032883 ENSMUST00000148608 Acsl3 protein_coding Interval_168396 chr9 80020820 80021143 + 0 NA Intergenic Intergenic -16448 ENSMUSG00000088908.1 ENSMUSG00000088908 ENSMUST00000158283 Gm25433 misc_RNA Interval_90530 chr2 30985227 30985671 + 0 NA intron (ENSMUSG00000026854.16, intron 2 of 4) protein_coding-intron (ENSMUSG00000026854.16, intron 1 of 9) 3115 ENSMUSG00000026854.16 ENSMUSG00000026854 ENSMUST00000127776 Usp20 protein_coding Interval_171772 chr9 120932879 120934583 + 0 NA promoter-TSS (ENSMUSG00000006932.17) protein_coding-intron (ENSMUSG00000006932.17, intron 1 of 14) -2964 ENSMUSG00000086365.2 ENSMUSG00000086365 ENSMUST00000214011 4930593C16Rik antisense Interval_46143 chr13 61996477 61996940 + 0 NA Intergenic Intergenic -9960 ENSMUSG00000113014.1 ENSMUSG00000113014 ENSMUST00000221926 Selenok-ps8 processed_pseudogene Interval_26132 chr11 54673583 54674165 + 0 NA intron (ENSMUSG00000037533.20, intron 14 of 17) protein_coding-intron (ENSMUSG00000037533.20, intron 13 of 16) -15301 ENSMUSG00000093341.2 ENSMUSG00000093341 ENSMUST00000175600 Gm26116 miRNA Interval_132531 chr5 145797793 145798203 + 0 NA intron (ENSMUSG00000054417.5, intron 4 of 12) protein_coding-intron (ENSMUSG00000054417.5, intron 4 of 12) 7876 ENSMUSG00000054417.5 ENSMUSG00000054417 ENSMUST00000067479 Cyp3a44 protein_coding Interval_72854 chr17 32692581 32692881 + 0 NA intron (ENSMUSG00000073424.9, intron 5 of 12) protein_coding-intron (ENSMUSG00000073424.9, intron 5 of 12) 7104 ENSMUSG00000073424.9 ENSMUSG00000073424 ENSMUST00000008801 Cyp4f15 protein_coding Interval_66203 chr16 32312154 32314433 + 0 NA Intergenic Intergenic 13402 ENSMUSG00000116900.1 ENSMUSG00000116900 ENSMUST00000232196 Gm8387 processed_pseudogene Interval_5319 chr1 87527220 87527612 + 0 NA intron (ENSMUSG00000079434.8, intron 1 of 2) protein_coding-intron (ENSMUSG00000026259.14, intron 3 of 14) 13241 ENSMUSG00000091123.1 ENSMUSG00000091123 ENSMUST00000168856 Gm17181 processed_pseudogene Interval_126848 chr5 94366665 94366912 + 0 NA intron (ENSMUSG00000073497.6, intron 1 of 2) protein_coding-intron (ENSMUSG00000073497.6, intron 1 of 2) -10529 ENSMUSG00000073497.6 ENSMUSG00000073497 ENSMUST00000202253 AA792892 protein_coding Interval_89331 chr2 19400786 19401090 + 0 NA Intergenic Intergenic -27108 ENSMUSG00000109733.1 ENSMUSG00000109733 ENSMUST00000209205 Gm33940 lincRNA Interval_103769 chr3 52523030 52523331 + 0 NA intron (ENSMUSG00000103965.1, intron 1 of 4) lincRNA-intron (ENSMUSG00000103965.1, intron 1 of 4) 6216 ENSMUSG00000103965.1 ENSMUSG00000103965 ENSMUST00000195035 Gm30173 lincRNA Interval_98775 chr2 154876207 154876774 + 0 NA intron (ENSMUSG00000074656.12, intron 7 of 9) protein_coding-intron (ENSMUSG00000074656.12, intron 7 of 8) 16292 ENSMUSG00000074656.12 ENSMUSG00000074656 ENSMUST00000135524 Eif2s2 protein_coding Interval_163251 chr9 19694035 19695553 + 0 NA Intergenic Intergenic 4175 ENSMUSG00000110610.1 ENSMUSG00000110610 ENSMUST00000212900 Gm7769 processed_pseudogene Interval_67888 chr16 58700490 58701393 + 0 NA intron (ENSMUSG00000022742.6, intron 1 of 1) protein_coding-intron (ENSMUSG00000022742.6, intron 1 of 1) 18129 ENSMUSG00000047293.7 ENSMUSG00000047293 ENSMUST00000089318 Gpr15 protein_coding Interval_138563 chr6 89344769 89345574 + 0 NA promoter-TSS (ENSMUSG00000107570.1) TEC-promoter-TSS (ENSMUSG00000107570.1) 31 ENSMUSG00000107570.1 ENSMUSG00000107570 ENSMUST00000204568 Gm44207 TEC Interval_122316 chr5 21244591 21245503 + 0 NA intron (ENSMUSG00000039934.12, intron 13 of 26) protein_coding-intron (ENSMUSG00000039934.12, intron 13 of 30) 31038 ENSMUSG00000104920.1 ENSMUSG00000104920 ENSMUST00000199108 Gm43215 processed_pseudogene Interval_90826 chr2 32852146 32852673 + 0 NA Intergenic Intergenic -5203 ENSMUSG00000026797.16 ENSMUSG00000026797 ENSMUST00000208840 Stxbp1 protein_coding Interval_68775 chr16 86094266 86094892 + 0 NA Intergenic Intergenic 56097 ENSMUSG00000116556.1 ENSMUSG00000116556 ENSMUST00000231250 1700007H22Rik lincRNA Interval_88478 chr2 5465343 5465789 + 0 NA intron (ENSMUSG00000039145.16, intron 2 of 2) protein_coding-intron (ENSMUSG00000039145.16, intron 2 of 10) -138005 ENSMUSG00000082013.1 ENSMUSG00000082013 ENSMUST00000117145 Gm13216 processed_pseudogene Interval_146454 chr7 46041251 46042347 + 0 NA intron (ENSMUSG00000030835.6, intron 4 of 30) protein_coding-intron (ENSMUSG00000030835.6, intron 4 of 30) -12361 ENSMUSG00000030835.6 ENSMUSG00000030835 ENSMUST00000182305 Nomo1 protein_coding Interval_137763 chr6 82204550 82206008 + 0 NA Intergenic Intergenic -36895 ENSMUSG00000108224.1 ENSMUSG00000108224 ENSMUST00000204563 Gm31861 processed_pseudogene Interval_42225 chr13 10213229 10213477 + 0 NA intron (ENSMUSG00000046159.16, intron 2 of 2) protein_coding-intron (ENSMUSG00000046159.16, intron 2 of 4) -32546 ENSMUSG00000113261.1 ENSMUSG00000113261 ENSMUST00000222625 Gm47404 sense_intronic Interval_43984 chr13 38766369 38766583 + 0 NA intron (ENSMUSG00000114767.1, intron 3 of 3) lincRNA-intron (ENSMUSG00000114767.1, intron 3 of 3) -9348 ENSMUSG00000114845.1 ENSMUSG00000114845 ENSMUST00000224482 Gm47511 lincRNA Interval_55054 chr14 77533544 77533825 + 0 NA intron (ENSMUSG00000022012.9, intron 6 of 6) protein_coding-intron (ENSMUSG00000022012.9, intron 7 of 18) 3286 ENSMUSG00000084431.1 ENSMUSG00000084431 ENSMUST00000122482 n-R5s48 rRNA Interval_94305 chr2 87725991 87726301 + 0 NA Intergenic Intergenic -12967 ENSMUSG00000075150.2 ENSMUSG00000075150 ENSMUST00000099850 Olfr1137 protein_coding Interval_52835 chr14 50964461 50964875 + 0 NA TTS (ENSMUSG00000068417.8) protein_coding-TTS (ENSMUSG00000068417.8) 8424 ENSMUSG00000068417.8 ENSMUSG00000068417 ENSMUST00000228593 Pnp2 protein_coding Interval_75691 chr17 70706306 70707892 + 0 NA intron (ENSMUSG00000003279.17, intron 4 of 9) protein_coding-intron (ENSMUSG00000003279.17, intron 9 of 14) 48483 ENSMUSG00000097282.1 ENSMUSG00000097282 ENSMUST00000181546 5031415H12Rik antisense Interval_73417 chr17 37081716 37083700 + 0 NA Intergenic Intergenic 5777 ENSMUSG00000056600.4 ENSMUSG00000056600 ENSMUST00000207101 Olfr90 protein_coding Interval_157146 chr8 66352747 66353133 + 0 NA intron (ENSMUSG00000036469.16, intron 2 of 5) protein_coding-intron (ENSMUSG00000036469.16, intron 2 of 5) 34595 ENSMUSG00000086156.1 ENSMUSG00000086156 ENSMUST00000132019 Gm15354 antisense Interval_47891 chr13 94204028 94205997 + 0 NA intron (ENSMUSG00000021687.14, intron 7 of 7) protein_coding-intron (ENSMUSG00000021687.14, intron 8 of 8) 41546 ENSMUSG00000021687.14 ENSMUSG00000021687 ENSMUST00000138255 Scamp1 protein_coding Interval_136515 chr6 55090854 55091577 + 0 NA TTS (ENSMUSG00000003476.16) protein_coding-TTS (ENSMUSG00000003476.16) 26698 ENSMUSG00000003476.16 ENSMUSG00000003476 ENSMUST00000169777 Crhr2 protein_coding Interval_139198 chr6 97112788 97113728 + 0 NA intron (ENSMUSG00000035245.12, intron 4 of 5) protein_coding-intron (ENSMUSG00000035245.12, intron 16 of 17) -34936 ENSMUSG00000107502.1 ENSMUSG00000107502 ENSMUST00000203184 Gm44065 TEC Interval_46723 chr13 69642510 69642785 + 0 NA Intergenic Intergenic 12865 ENSMUSG00000113790.1 ENSMUSG00000113790 ENSMUST00000222550 Gm17872 processed_pseudogene Interval_151466 chr7 122807987 122808651 + 0 NA Intergenic Intergenic -29644 ENSMUSG00000108529.1 ENSMUSG00000108529 ENSMUST00000205860 Gm29759 processed_pseudogene Interval_129987 chr5 123543573 123545672 + 0 NA intron (ENSMUSG00000029434.12, intron 8 of 12) protein_coding-intron (ENSMUSG00000029434.12, intron 8 of 12) 14397 ENSMUSG00000029434.12 ENSMUSG00000029434 ENSMUST00000197467 Vps33a protein_coding Interval_138924 chr6 93576057 93576262 + 0 NA Intergenic Intergenic 66586 ENSMUSG00000088630.1 ENSMUSG00000088630 ENSMUST00000158005 Gm22312 snoRNA Interval_172899 chrX 53005038 53005275 + 0 NA intron (ENSMUSG00000025630.8, intron 3 of 8) protein_coding-intron (ENSMUSG00000025630.8, intron 3 of 8) 17019 ENSMUSG00000025630.8 ENSMUSG00000025630 ENSMUST00000026723 Hprt protein_coding Interval_2116 chr1 36528451 36528768 + 0 NA promoter-TSS (ENSMUSG00000102845.1) antisense-promoter-TSS (ENSMUSG00000102845.1) -372 ENSMUSG00000102845.1 ENSMUSG00000102845 ENSMUST00000192037 Gm38033 antisense Interval_133329 chr6 3340891 3341642 + 0 NA TTS (ENSMUSG00000106734.3) processed_transcript-TTS (ENSMUSG00000106734.3) -1912 ENSMUSG00000107215.1 ENSMUSG00000107215 ENSMUST00000201493 Gm43197 TEC Interval_26857 chr11 61115637 61116635 + 0 NA Intergenic Intergenic -10622 ENSMUSG00000010142.12 ENSMUSG00000010142 ENSMUST00000123378 Tnfrsf13b protein_coding Interval_33922 chr11 119411694 119412101 + 0 NA intron (ENSMUSG00000070327.14, intron 7 of 66) protein_coding-intron (ENSMUSG00000070327.14, intron 7 of 66) 21425 ENSMUSG00000088015.1 ENSMUSG00000088015 ENSMUST00000157390 Mir1932 miRNA Interval_151292 chr7 120724578 120725864 + 0 NA promoter-TSS (ENSMUSG00000046096.7) protein_coding-promoter-TSS (ENSMUSG00000046096.7) -955 ENSMUSG00000046096.7 ENSMUSG00000046096 ENSMUST00000208534 Mosmo protein_coding Interval_43170 chr13 24826136 24826341 + 0 NA intron (ENSMUSG00000006717.7, intron 1 of 1) protein_coding-intron (ENSMUSG00000006717.7, intron 1 of 2) 5302 ENSMUSG00000006717.7 ENSMUSG00000006717 ENSMUST00000224839 Acot13 protein_coding Interval_4336 chr1 72796739 72798032 + 0 NA Intergenic Intergenic -51314 ENSMUSG00000039323.18 ENSMUSG00000039323 ENSMUST00000155703 Igfbp2 protein_coding Interval_101032 chr2 174357635 174357976 + 0 NA Intergenic Intergenic -11093 ENSMUSG00000090625.1 ENSMUSG00000090625 ENSMUST00000168292 Gm20721 protein_coding Interval_172411 chrX 18189444 18189792 + 0 NA intron (ENSMUSG00000037369.17, intron 2 of 7) protein_coding-intron (ENSMUSG00000037369.17, intron 2 of 28) 43761 ENSMUSG00000025043.3 ENSMUSG00000025043 ENSMUST00000026018 Dusp21 protein_coding Interval_36903 chr12 55073623 55074299 + 0 NA intron (ENSMUSG00000062198.5, intron 1 of 5) protein_coding-intron (ENSMUSG00000062198.5, intron 1 of 7) -5760 ENSMUSG00000113137.1 ENSMUSG00000113137 ENSMUST00000220953 Gm7511 processed_pseudogene Interval_21866 chr11 4839366 4839574 + 0 NA intron (ENSMUSG00000009073.16, intron 1 of 1) protein_coding-intron (ENSMUSG00000009073.16, intron 1 of 16) 9655 ENSMUSG00000009073.16 ENSMUSG00000009073 ENSMUST00000172305 Nf2 protein_coding Interval_71671 chr17 25284974 25285536 + 0 NA Intergenic Intergenic -13139 ENSMUSG00000056399.2 ENSMUSG00000056399 ENSMUST00000037453 Prss34 protein_coding Interval_126795 chr5 92983831 92984348 + 0 NA Intergenic Intergenic -19742 ENSMUSG00000106930.1 ENSMUSG00000106930 ENSMUST00000200896 Gm6450 processed_pseudogene Interval_92641 chr2 61804842 61805872 + 0 NA promoter-TSS (ENSMUSG00000035033.15) protein_coding-promoter-TSS (ENSMUSG00000035033.15) 2427 ENSMUSG00000035033.15 ENSMUSG00000035033 ENSMUST00000131538 Tbr1 protein_coding Interval_14696 chr10 39113645 39115177 + 0 NA Intergenic Intergenic 8630 ENSMUSG00000019846.11 ENSMUSG00000019846 ENSMUST00000163036 Lama4 protein_coding Interval_84800 chr19 16841680 16842126 + 0 NA Intergenic Intergenic 31902 ENSMUSG00000056829.4 ENSMUSG00000056829 ENSMUST00000072915 Foxb2 protein_coding Interval_10492 chr1 171304731 171305037 + 0 NA TTS (ENSMUSG00000079137.3) processed_pseudogene-TTS (ENSMUSG00000079137.3) 610 ENSMUSG00000079137.3 ENSMUSG00000079137 ENSMUST00000088784 Rpl27-ps1 processed_pseudogene Interval_124013 chr5 37232853 37233608 + 0 NA Intergenic Intergenic -14055 ENSMUSG00000029121.16 ENSMUSG00000029121 ENSMUST00000200834 Crmp1 protein_coding Interval_110651 chr4 5724266 5724496 + 0 NA promoter-TSS (ENSMUSG00000049119.14) protein_coding-promoter-TSS (ENSMUSG00000049119.14) -36579 ENSMUSG00000077392.1 ENSMUSG00000077392 ENSMUST00000104204 Gm24337 snoRNA Interval_96041 chr2 119371957 119372325 + 0 NA TTS (ENSMUSG00000034154.15) protein_coding-TTS (ENSMUSG00000034154.15) 20912 ENSMUSG00000027313.3 ENSMUSG00000027313 ENSMUST00000028780 Chac1 protein_coding Interval_50569 chr14 15734244 15735254 + 0 NA intron (ENSMUSG00000114794.1, intron 3 of 3) lincRNA-intron (ENSMUSG00000114794.1, intron 3 of 3) -38940 ENSMUSG00000114586.1 ENSMUSG00000114586 ENSMUST00000225565 Gm31804 lincRNA Interval_170406 chr9 107714495 107714975 + 0 NA Intergenic Intergenic -29974 ENSMUSG00000034684.12 ENSMUSG00000034684 ENSMUST00000195023 Sema3f protein_coding Interval_10858 chr1 176141710 176142181 + 0 NA intron (ENSMUSG00000055214.15, intron 1 of 5) protein_coding-intron (ENSMUSG00000055214.15, intron 1 of 9) -37256 ENSMUSG00000103277.1 ENSMUSG00000103277 ENSMUST00000192153 Gm37916 TEC Interval_147789 chr7 73557767 73559105 + 0 NA promoter-TSS (ENSMUSG00000101970.8) processed_transcript-promoter-TSS (ENSMUSG00000101970.8) -289 ENSMUSG00000101970.8 ENSMUSG00000101970 ENSMUST00000184655 1810026B05Rik processed_transcript Interval_77848 chr18 4443396 4444656 + 0 NA Intergenic Intergenic -40443 ENSMUSG00000117640.1 ENSMUSG00000117640 ENSMUST00000234230 Gm7411 processed_pseudogene Interval_67190 chr16 44259624 44260205 + 0 NA intron (ENSMUSG00000022696.17, intron 17 of 24) protein_coding-intron (ENSMUSG00000022696.17, intron 17 of 25) 22584 ENSMUSG00000022696.17 ENSMUSG00000022696 ENSMUST00000124651 Sidt1 protein_coding Interval_12393 chr1 192879441 192880516 + 0 NA Intergenic Intergenic -8593 ENSMUSG00000102162.1 ENSMUSG00000102162 ENSMUST00000192374 Gm2367 processed_pseudogene Interval_172835 chrX 50930178 50930652 + 0 NA intron (ENSMUSG00000036131.12, intron 1 of 10) protein_coding-intron (ENSMUSG00000036131.12, intron 1 of 11) 12295 ENSMUSG00000036131.12 ENSMUSG00000036131 ENSMUST00000060650 Frmd7 protein_coding Interval_41204 chr12 111769197 111769973 + 0 NA intron (ENSMUSG00000021288.19, intron 1 of 15) protein_coding-intron (ENSMUSG00000021288.19, intron 1 of 15) 10736 ENSMUSG00000021288.19 ENSMUSG00000021288 ENSMUST00000147203 Klc1 protein_coding Interval_173849 chrX 105941459 105941774 + 0 NA Intergenic Intergenic -66311 ENSMUSG00000031229.16 ENSMUSG00000031229 ENSMUST00000126345 Atrx protein_coding Interval_173473 chrX 94366330 94367564 + 0 NA promoter-TSS (ENSMUSG00000043549.13) protein_coding-promoter-TSS (ENSMUSG00000043549.13) -170 ENSMUSG00000079508.8 ENSMUSG00000079508 ENSMUST00000113895 Apoo protein_coding Interval_160060 chr8 106110850 106112945 + 0 NA intron (ENSMUSG00000031902.10, intron 9 of 9) protein_coding-intron (ENSMUSG00000031902.10, intron 9 of 9) 24788 ENSMUSG00000084128.10 ENSMUSG00000084128 ENSMUST00000155164 Esrp2 protein_coding Interval_113491 chr4 55325808 55326030 + 0 NA Intergenic Intergenic -24171 ENSMUSG00000028426.10 ENSMUSG00000028426 ENSMUST00000156263 Rad23b protein_coding Interval_97645 chr2 141876524 141876747 + 0 NA intron (ENSMUSG00000068205.14, intron 3 of 13) protein_coding-intron (ENSMUSG00000068205.14, intron 8 of 17) 37846 ENSMUSG00000082412.1 ENSMUSG00000082412 ENSMUST00000119675 Fau-ps1 processed_pseudogene Interval_13115 chr10 11530814 11531549 + 0 NA Intergenic Intergenic 25885 ENSMUSG00000111949.1 ENSMUSG00000111949 ENSMUST00000219639 Gm48679 processed_pseudogene Interval_30189 chr11 90357372 90357691 + 0 NA intron (ENSMUSG00000003949.16, intron 1 of 1) protein_coding-intron (ENSMUSG00000003949.16, intron 2 of 3) 30442 ENSMUSG00000003949.16 ENSMUSG00000003949 ENSMUST00000145786 Hlf protein_coding Interval_141086 chr6 124891637 124892925 + 0 NA Intergenic Intergenic -4082 ENSMUSG00000023274.14 ENSMUSG00000023274 ENSMUST00000130378 Cd4 protein_coding Interval_69577 chr16 94377013 94377410 + 0 NA intron (ENSMUSG00000040785.19, intron 1 of 4) protein_coding-intron (ENSMUSG00000040785.19, intron 1 of 45) -5369 ENSMUSG00000022940.17 ENSMUSG00000022940 ENSMUST00000138514 Pigp protein_coding Interval_52779 chr14 49818489 49820524 + 0 NA intron (ENSMUSG00000115212.1, intron 1 of 2) transcribed_unprocessed_pseudogene-intron (ENSMUSG00000115212.1, intron 1 of 2) 13657 ENSMUSG00000115212.1 ENSMUSG00000115212 ENSMUST00000228347 Gm8417 transcribed_unprocessed_pseudogene Interval_33709 chr11 118014423 118014921 + 0 NA exon (ENSMUSG00000017715.11, exon 8 of 10) protein_coding-exon (ENSMUSG00000017715.11, exon 8 of 10) 2329 ENSMUSG00000017715.11 ENSMUSG00000017715 ENSMUST00000155507 Pgs1 protein_coding Interval_25178 chr11 44793551 44794035 + 0 NA intron (ENSMUSG00000057098.14, intron 6 of 15) protein_coding-intron (ENSMUSG00000057098.14, intron 6 of 15) -131117 ENSMUSG00000085784.1 ENSMUSG00000085784 ENSMUST00000130493 Gm12158 antisense Interval_92809 chr2 65787507 65787721 + 0 NA Intergenic Intergenic -25417 ENSMUSG00000118566.1 ENSMUSG00000118566 ENSMUST00000238931 BX284648.1 unprocessed_pseudogene Interval_22449 chr11 10250903 10251306 + 0 NA Intergenic Intergenic 11767 ENSMUSG00000082312.1 ENSMUSG00000082312 ENSMUST00000117538 Gm11996 processed_pseudogene Interval_34218 chr11 121360749 121360973 + 0 NA intron (ENSMUSG00000025170.13, intron 2 of 4) protein_coding-intron (ENSMUSG00000025170.13, intron 2 of 5) -19673 ENSMUSG00000025173.13 ENSMUSG00000025173 ENSMUST00000127373 Wdr45b protein_coding Interval_148379 chr7 80882595 80883571 + 0 NA Intergenic Intergenic 18149 ENSMUSG00000025722.16 ENSMUSG00000025722 ENSMUST00000145923 Wdr73 protein_coding Interval_28845 chr11 78711706 78711935 + 0 NA Intergenic Intergenic -2059 ENSMUSG00000085115.1 ENSMUSG00000085115 ENSMUST00000145158 Gm11197 processed_pseudogene Interval_26353 chr11 57164842 57165107 + 0 NA intron (ENSMUSG00000020524.16, intron 2 of 15) protein_coding-intron (ENSMUSG00000020524.16, intron 2 of 15) -11544 ENSMUSG00000020524.16 ENSMUSG00000020524 ENSMUST00000173531 Gria1 protein_coding Interval_30918 chr11 97215682 97216278 + 0 NA intron (ENSMUSG00000001441.13, intron 16 of 17) protein_coding-intron (ENSMUSG00000001441.13, intron 19 of 22) -50580 ENSMUSG00000001440.5 ENSMUSG00000001440 ENSMUST00000153727 Kpnb1 protein_coding Interval_23253 chr11 20922970 20923453 + 0 NA Intergenic Intergenic 14490 ENSMUSG00000096061.1 ENSMUSG00000096061 ENSMUST00000178821 Gm23681 miRNA Interval_91097 chr2 35009393 35009734 + 0 NA intron (ENSMUSG00000026874.10, intron 26 of 40) protein_coding-intron (ENSMUSG00000026874.10, intron 26 of 40) 10082 ENSMUSG00000026874.10 ENSMUSG00000026874 ENSMUST00000151628 Hc protein_coding Interval_107254 chr3 105004584 105006149 + 0 NA TTS (ENSMUSG00000062127.11) protein_coding-TTS (ENSMUSG00000062127.11) 11334 ENSMUSG00000105355.1 ENSMUSG00000105355 ENSMUST00000198827 Gm40117 antisense Interval_52193 chr14 40096783 40098213 + 0 NA Intergenic Intergenic 87596 ENSMUSG00000089021.1 ENSMUSG00000089021 ENSMUST00000158396 Gm25012 snRNA Interval_121943 chr5 10820590 10821138 + 0 NA Intergenic Intergenic -45152 ENSMUSG00000091422.8 ENSMUSG00000091422 ENSMUST00000168057 Gm6455 lincRNA Interval_146255 chr7 44996865 44998847 + 0 NA promoter-TSS (ENSMUSG00000003190.12) protein_coding-promoter-TSS (ENSMUSG00000003190.12) 190 ENSMUSG00000003184.15 ENSMUSG00000003184 ENSMUST00000208906 Irf3 protein_coding Interval_146695 chr7 49493190 49493451 + 0 NA exon (ENSMUSG00000052512.17, exon 11 of 11) protein_coding-exon (ENSMUSG00000052512.17, exon 11 of 11) 23608 ENSMUSG00000102148.1 ENSMUSG00000102148 ENSMUST00000193746 Gm38059 TEC Interval_5339 chr1 87708563 87709182 + 0 NA promoter-TSS (ENSMUSG00000026288.14) protein_coding-promoter-TSS (ENSMUSG00000026288.14) 32633 ENSMUSG00000026288.14 ENSMUSG00000026288 ENSMUST00000163548 Inpp5d protein_coding Interval_17726 chr10 79758695 79759098 + 0 NA TTS (ENSMUSG00000020327.4) protein_coding-TTS (ENSMUSG00000020327.4) 3820 ENSMUSG00000020327.4 ENSMUSG00000020327 ENSMUST00000020577 Fgf22 protein_coding Interval_4733 chr1 78096497 78096882 + 0 NA Intergenic Intergenic 100424 ENSMUSG00000004872.15 ENSMUSG00000004872 ENSMUST00000172555 Pax3 protein_coding Interval_43678 chr13 34916492 34917318 + 0 NA promoter-TSS (ENSMUSG00000021414.8) protein_coding-promoter-TSS (ENSMUSG00000021414.8) 84 ENSMUSG00000021414.8 ENSMUSG00000021414 ENSMUST00000224613 Fam217a protein_coding Interval_8921 chr1 152220970 152221392 + 0 NA Intergenic Intergenic 71347 ENSMUSG00000103744.1 ENSMUSG00000103744 ENSMUST00000194334 Gm38238 TEC Interval_122536 chr5 23645841 23646111 + 0 NA intron (ENSMUSG00000062604.11, intron 1 of 3) protein_coding-intron (ENSMUSG00000062604.11, intron 1 of 3) 28405 ENSMUSG00000088359.1 ENSMUSG00000088359 ENSMUST00000157734 Gm24009 rRNA Interval_172910 chrX 53266081 53266764 + 0 NA intron (ENSMUSG00000036022.15, intron 1 of 9) protein_coding-intron (ENSMUSG00000036022.15, intron 1 of 8) 3383 ENSMUSG00000036022.15 ENSMUSG00000036022 ENSMUST00000143069 Fam122b protein_coding Interval_148448 chr7 81326968 81327336 + 0 NA intron (ENSMUSG00000025584.17, intron 19 of 21) protein_coding-intron (ENSMUSG00000025584.17, intron 19 of 21) 18075 ENSMUSG00000061787.15 ENSMUSG00000061787 ENSMUST00000138936 Rps17 protein_coding Interval_110017 chr3 152480528 152480833 + 0 NA intron (ENSMUSG00000039058.11, intron 4 of 6) protein_coding-intron (ENSMUSG00000039058.11, intron 11 of 13) 46072 ENSMUSG00000039058.11 ENSMUSG00000039058 ENSMUST00000198552 Ak5 protein_coding Interval_83458 chr18 85826653 85827342 + 0 NA Intergenic Intergenic 21732 ENSMUSG00000118241.1 ENSMUSG00000118241 ENSMUST00000237360 Gm5824 processed_pseudogene Interval_133796 chr6 12278151 12278333 + 0 NA Intergenic Intergenic 149616 ENSMUSG00000108209.1 ENSMUSG00000108209 ENSMUST00000203296 Gm32222 processed_pseudogene Interval_77860 chr18 4761358 4762408 + 0 NA Intergenic Intergenic 18807 ENSMUSG00000117585.1 ENSMUSG00000117585 ENSMUST00000234879 Gm5047 processed_pseudogene Interval_58424 chr15 34428302 34429711 + 0 NA TTS (ENSMUSG00000022324.15) protein_coding-TTS (ENSMUSG00000022324.15) 11916 ENSMUSG00000065899.1 ENSMUSG00000065899 ENSMUST00000083965 Gm24523 snoRNA Interval_158500 chr8 84097038 84097710 + 0 NA TTS (ENSMUSG00000031706.7) protein_coding-TTS (ENSMUSG00000031706.7) 7394 ENSMUSG00000037103.8 ENSMUSG00000037103 ENSMUST00000210625 Dcaf15 protein_coding Interval_126196 chr5 82085355 82086784 + 0 NA Intergenic Intergenic 35293 ENSMUSG00000106860.1 ENSMUSG00000106860 ENSMUST00000201220 1700008H02Rik TEC Interval_45284 chr13 54019364 54019706 + 0 NA Intergenic Intergenic 35245 ENSMUSG00000021478.6 ENSMUSG00000021478 ENSMUST00000222706 Drd1 protein_coding Interval_41648 chr12 117352478 117353445 + 0 NA Intergenic Intergenic -15949 ENSMUSG00000101930.1 ENSMUSG00000101930 ENSMUST00000186454 Gm5441 antisense Interval_135985 chr6 49246963 49247625 + 0 NA intron (ENSMUSG00000029817.11, intron 4 of 6) protein_coding-intron (ENSMUSG00000029817.11, intron 4 of 7) -7557 ENSMUSG00000107962.1 ENSMUSG00000107962 ENSMUST00000204899 Gm43980 TEC Interval_44460 chr13 44961088 44961339 + 0 NA intron (ENSMUSG00000057531.14, intron 1 of 3) protein_coding-intron (ENSMUSG00000057531.14, intron 6 of 9) 40839 ENSMUSG00000057531.14 ENSMUSG00000057531 ENSMUST00000223524 Dtnbp1 protein_coding Interval_8964 chr1 152790211 152791595 + 0 NA Intergenic Intergenic -16934 ENSMUSG00000026480.12 ENSMUSG00000026480 ENSMUST00000187235 Ncf2 protein_coding Interval_56407 chr14 118551231 118553150 + 0 NA intron (ENSMUSG00000032849.14, intron 19 of 29) protein_coding-intron (ENSMUSG00000032849.14, intron 20 of 30) -11882 ENSMUSG00000115075.1 ENSMUSG00000115075 ENSMUST00000227627 Gm49033 processed_pseudogene Interval_35584 chr12 25059967 25060169 + 0 NA TTS (ENSMUSG00000036333.11) protein_coding-TTS (ENSMUSG00000036333.11) -4624 ENSMUSG00000114148.1 ENSMUSG00000114148 ENSMUST00000220747 Gm47701 lincRNA Interval_137295 chr6 71143272 71144662 + 0 NA intron (ENSMUSG00000054474.15, intron 1 of 9) protein_coding-intron (ENSMUSG00000054474.15, intron 1 of 9) -11995 ENSMUSG00000054474.15 ENSMUSG00000054474 ENSMUST00000170455 Thnsl2 protein_coding Interval_29748 chr11 86554749 86555052 + 0 NA promoter-TSS (ENSMUSG00000020513.15) protein_coding-promoter-TSS (ENSMUSG00000020513.15) 9909 ENSMUSG00000020513.15 ENSMUSG00000020513 ENSMUST00000164931 Tubd1 protein_coding Interval_156566 chr8 52232740 52232962 + 0 NA Intergenic Intergenic -35795 ENSMUSG00000052825.6 ENSMUSG00000052825 ENSMUST00000182415 Gm9892 processed_pseudogene Interval_166168 chr9 57206702 57207664 + 0 NA Intergenic Intergenic -29373 ENSMUSG00000070298.6 ENSMUSG00000070298 ENSMUST00000093837 Trcg1 protein_coding Interval_49028 chr13 107037706 107037971 + 0 NA intron (ENSMUSG00000071181.2, intron 1 of 1) processed_transcript-intron (ENSMUSG00000071181.2, intron 1 of 1) 3554 ENSMUSG00000114893.1 ENSMUSG00000114893 ENSMUST00000224166 Gm48684 lincRNA Interval_105335 chr3 85024322 85025342 + 0 NA intron (ENSMUSG00000102805.5, intron 3 of 9) protein_coding-intron (ENSMUSG00000102805.5, intron 3 of 9) 127864 ENSMUSG00000104290.1 ENSMUSG00000104290 ENSMUST00000194445 Gm38041 processed_pseudogene Interval_168565 chr9 83609888 83610549 + 0 NA intron (ENSMUSG00000032261.16, intron 3 of 3) protein_coding-intron (ENSMUSG00000032261.16, intron 2 of 2) -36929 ENSMUSG00000110950.1 ENSMUSG00000110950 ENSMUST00000213703 Gm39384 lincRNA Interval_75874 chr17 72422822 72423646 + 0 NA intron (ENSMUSG00000055471.7, intron 1 of 3) protein_coding-intron (ENSMUSG00000055471.7, intron 1 of 28) 76184 ENSMUSG00000089487.1 ENSMUSG00000089487 ENSMUST00000158862 Gm24736 snRNA Interval_16072 chr10 60536152 60537185 + 0 NA intron (ENSMUSG00000012819.15, intron 5 of 65) protein_coding-intron (ENSMUSG00000012819.15, intron 5 of 66) 136764 ENSMUSG00000090439.3 ENSMUSG00000090439 ENSMUST00000218360 Gm17455 protein_coding Interval_71530 chr17 24359687 24359902 + 0 NA intron (ENSMUSG00000024130.16, intron 2 of 6) protein_coding-intron (ENSMUSG00000024130.16, intron 2 of 32) 2750 ENSMUSG00000095396.1 ENSMUSG00000095396 ENSMUST00000179484 Gm25618 snRNA Interval_43447 chr13 31071620 31071832 + 0 NA Intergenic Intergenic 6119 ENSMUSG00000114161.1 ENSMUSG00000114161 ENSMUST00000220673 Gm48662 lincRNA Interval_53285 chr14 55781088 55781852 + 0 NA intron (ENSMUSG00000022220.14, intron 2 of 20) protein_coding-intron (ENSMUSG00000022220.14, intron 4 of 25) 4882 ENSMUSG00000022221.14 ENSMUSG00000022221 ENSMUST00000226203 Ripk3 protein_coding Interval_51262 chr14 25604402 25605230 + 0 NA intron (ENSMUSG00000007817.15, intron 6 of 23) protein_coding-intron (ENSMUSG00000007817.15, intron 6 of 23) 70377 ENSMUSG00000093081.1 ENSMUSG00000093081 ENSMUST00000175340 Mir3075 miRNA Interval_145211 chr7 30671278 30671916 + 0 NA promoter-TSS (ENSMUSG00000049761.6) protein_coding-promoter-TSS (ENSMUSG00000049761.6) 3 ENSMUSG00000049761.6 ENSMUSG00000049761 ENSMUST00000186845 Pmis2 protein_coding Interval_128641 chr5 114461171 114462903 + 0 NA Intergenic Intergenic 9617 ENSMUSG00000041939.14 ENSMUSG00000041939 ENSMUST00000139420 Mvk protein_coding Interval_84926 chr19 18838432 18839330 + 0 NA intron (ENSMUSG00000024727.9, intron 25 of 38) protein_coding-intron (ENSMUSG00000024727.9, intron 25 of 38) -61920 ENSMUSG00000088601.1 ENSMUSG00000088601 ENSMUST00000157976 Gm24190 misc_RNA Interval_120067 chr4 141628354 141629427 + 0 NA exon (ENSMUSG00000028917.14, exon 2 of 2) protein_coding-exon (ENSMUSG00000028917.14, exon 2 of 2) 2157 ENSMUSG00000028917.14 ENSMUSG00000028917 ENSMUST00000141844 Plekhm2 protein_coding Interval_142809 chr6 145934020 145935226 + 0 NA intron (ENSMUSG00000030255.13, intron 1 of 2) protein_coding-intron (ENSMUSG00000030255.13, intron 1 of 2) 2982 ENSMUSG00000030255.13 ENSMUSG00000030255 ENSMUST00000111701 Sspn protein_coding Interval_71993 chr17 27475012 27475651 + 0 NA intron (ENSMUSG00000063239.17, intron 1 of 8) protein_coding-intron (ENSMUSG00000063239.17, intron 2 of 10) -6442 ENSMUSG00000116568.1 ENSMUSG00000116568 ENSMUST00000231818 Gm49790 TEC Interval_59143 chr15 44747835 44748975 + 0 NA promoter-TSS (ENSMUSG00000022340.15) protein_coding-promoter-TSS (ENSMUSG00000022340.15) -3875 ENSMUSG00000060530.2 ENSMUSG00000060530 ENSMUST00000081361 A930017M01Rik transcribed_processed_pseudogene Interval_85173 chr19 23351820 23352249 + 0 NA intron (ENSMUSG00000033207.7, intron 7 of 12) protein_coding-intron (ENSMUSG00000033207.7, intron 8 of 13) 55705 ENSMUSG00000096249.1 ENSMUSG00000096249 ENSMUST00000104059 Gm24263 snRNA Interval_107221 chr3 104707264 104708108 + 0 NA intron (ENSMUSG00000100466.1, intron 1 of 1) TEC-intron (ENSMUSG00000100466.1, intron 1 of 1) 1101 ENSMUSG00000100466.1 ENSMUSG00000100466 ENSMUST00000190305 Gm29572 TEC Interval_43180 chr13 24901695 24902232 + 0 NA TTS (ENSMUSG00000006711.15) protein_coding-TTS (ENSMUSG00000006711.15) -3657 ENSMUSG00000086796.2 ENSMUSG00000086796 ENSMUST00000225028 4932702P03Rik antisense Interval_168479 chr9 81939749 81939988 + 0 NA intron (ENSMUSG00000043289.12, intron 3 of 4) protein_coding-intron (ENSMUSG00000043289.12, intron 3 of 4) 76163 ENSMUSG00000043289.12 ENSMUSG00000043289 ENSMUST00000189391 Mei4 protein_coding Interval_45464 chr13 55284214 55285977 + 0 NA intron (ENSMUSG00000021488.8, intron 10 of 20) protein_coding-intron (ENSMUSG00000021488.8, intron 12 of 22) -30694 ENSMUSG00000114359.1 ENSMUSG00000114359 ENSMUST00000224833 Gm47816 processed_pseudogene Interval_134306 chr6 24766123 24766434 + 0 NA exon (ENSMUSG00000029680.2, exon 5 of 5) protein_coding-exon (ENSMUSG00000029680.2, exon 5 of 5) 17949 ENSMUSG00000029680.2 ENSMUSG00000029680 ENSMUST00000031691 Hyal4 protein_coding Interval_91997 chr2 52404128 52404508 + 0 NA intron (ENSMUSG00000036093.7, intron 2 of 2) protein_coding-intron (ENSMUSG00000036093.7, intron 5 of 5) 7997 ENSMUSG00000036093.7 ENSMUSG00000036093 ENSMUST00000130357 Arl5a protein_coding Interval_66471 chr16 34073198 34073983 + 0 NA intron (ENSMUSG00000061751.16, intron 33 of 48) protein_coding-intron (ENSMUSG00000061751.16, intron 34 of 59) 22438 ENSMUSG00000061751.16 ENSMUSG00000061751 ENSMUST00000132569 Kalrn protein_coding Interval_128819 chr5 115444136 115445333 + 0 NA intron (ENSMUSG00000054256.11, intron 9 of 10) protein_coding-intron (ENSMUSG00000054256.11, intron 8 of 13) -8090 ENSMUSG00000107353.1 ENSMUSG00000107353 ENSMUST00000202251 4930430O22Rik antisense Interval_86874 chr19 44544510 44546022 + 0 NA intron (ENSMUSG00000091471.1, intron 1 of 1) protein_coding-intron (ENSMUSG00000051984.13, intron 1 of 25) 7565 ENSMUSG00000091471.1 ENSMUSG00000091471 ENSMUST00000166808 Gm20538 protein_coding Interval_4872 chr1 80722691 80722879 + 0 NA intron (ENSMUSG00000038608.15, intron 1 of 13) protein_coding-intron (ENSMUSG00000038608.15, intron 1 of 55) 7879 ENSMUSG00000104488.1 ENSMUSG00000104488 ENSMUST00000192541 Gm38062 TEC Interval_149360 chr7 97685740 97685972 + 0 NA exon (ENSMUSG00000035623.14, exon 16 of 16) protein_coding-exon (ENSMUSG00000035623.14, exon 16 of 16) 10687 ENSMUSG00000086993.1 ENSMUSG00000086993 ENSMUST00000141549 Rsf1os2 antisense Interval_36699 chr12 52243339 52243719 + 0 NA intron (ENSMUSG00000035142.18, intron 5 of 5) protein_coding-intron (ENSMUSG00000035142.18, intron 6 of 10) 67442 ENSMUSG00000035142.18 ENSMUSG00000035142 ENSMUST00000162111 Nubpl protein_coding Interval_158900 chr8 87822793 87822986 + 0 NA intron (ENSMUSG00000045333.15, intron 3 of 3) protein_coding-intron (ENSMUSG00000045333.15, intron 2 of 6) 130973 ENSMUSG00000045333.15 ENSMUSG00000045333 ENSMUST00000173092 Zfp423 protein_coding Interval_86760 chr19 43667213 43667664 + 0 NA promoter-TSS (ENSMUSG00000040414.8) protein_coding-promoter-TSS (ENSMUSG00000040414.8) -295 ENSMUSG00000040414.8 ENSMUSG00000040414 ENSMUST00000236433 Slc25a28 protein_coding Interval_773 chr1 10852910 10853955 + 0 NA Intergenic Intergenic -15256 ENSMUSG00000100648.1 ENSMUSG00000100648 ENSMUST00000188013 Gm28659 processed_pseudogene Interval_19683 chr10 107924611 107925881 + 0 NA Intergenic Intergenic -13112 ENSMUSG00000091455.4 ENSMUSG00000091455 ENSMUST00000165341 Otogl protein_coding Interval_74070 chr17 46408388 46408730 + 0 NA intron (ENSMUSG00000015597.17, intron 6 of 7) protein_coding-intron (ENSMUSG00000015597.17, intron 6 of 9) -1075 ENSMUSG00000117269.1 ENSMUSG00000117269 ENSMUST00000233090 Gm9706 processed_pseudogene Interval_110254 chr3 154927645 154928723 + 0 NA intron (ENSMUSG00000040086.13, intron 17 of 22) protein_coding-intron (ENSMUSG00000040086.13, intron 17 of 24) 6888 ENSMUSG00000102238.1 ENSMUSG00000102238 ENSMUST00000195610 Gm37890 TEC Interval_141526 chr6 128878753 128879047 + 0 NA TTS (ENSMUSG00000090164.8) protein_coding-TTS (ENSMUSG00000090164.8) -4952 ENSMUSG00000107733.1 ENSMUSG00000107733 ENSMUST00000203621 Gm8774 processed_pseudogene Interval_123224 chr5 30750326 30750645 + 0 NA intron (ENSMUSG00000029168.14, intron 2 of 12) protein_coding-intron (ENSMUSG00000029168.14, intron 2 of 12) -8547 ENSMUSG00000106173.1 ENSMUSG00000106173 ENSMUST00000197835 Gm42764 sense_intronic Interval_24214 chr11 31564109 31565029 + 0 NA Intergenic Intergenic 107158 ENSMUSG00000044502.16 ENSMUSG00000044502 ENSMUST00000109415 Bod1 protein_coding Interval_164038 chr9 31082003 31082580 + 0 NA exon (ENSMUSG00000097701.1, exon 1 of 2) lincRNA-exon (ENSMUSG00000097701.1, exon 1 of 2) 184 ENSMUSG00000097701.1 ENSMUSG00000097701 ENSMUST00000181215 Gm17508 lincRNA Interval_144126 chr7 19545507 19546432 + 0 NA intron (ENSMUSG00000051403.9, intron 1 of 12) protein_coding-intron (ENSMUSG00000051403.9, intron 1 of 12) -12987 ENSMUSG00000051403.9 ENSMUSG00000051403 ENSMUST00000208678 Ppp1r37 protein_coding Interval_167582 chr9 70656234 70657805 + 0 NA exon (ENSMUSG00000042444.10, exon 1 of 9) protein_coding-exon (ENSMUSG00000042444.10, exon 1 of 9) 128 ENSMUSG00000042444.10 ENSMUSG00000042444 ENSMUST00000214293 Mindy2 protein_coding Interval_56738 chr14 121762158 121762681 + 0 NA intron (ENSMUSG00000025558.19, intron 1 of 52) protein_coding-intron (ENSMUSG00000025558.19, intron 1 of 52) -23558 ENSMUSG00000025558.19 ENSMUSG00000025558 ENSMUST00000238406 Dock9 protein_coding Interval_114552 chr4 82452596 82453036 + 0 NA intron (ENSMUSG00000008575.17, intron 2 of 4) protein_coding-intron (ENSMUSG00000008575.17, intron 2 of 11) 13406 ENSMUSG00000084595.1 ENSMUSG00000084595 ENSMUST00000122646 n-R5s188 rRNA Interval_161513 chr8 120840147 120840376 + 0 NA intron (ENSMUSG00000092329.1, intron 1 of 15) protein_coding-intron (ENSMUSG00000092329.1, intron 1 of 15) -39945 ENSMUSG00000097087.1 ENSMUSG00000097087 ENSMUST00000181778 Gm26878 lincRNA Interval_6909 chr1 120594690 120594961 + 0 NA Intergenic Intergenic -7593 ENSMUSG00000058665.8 ENSMUSG00000058665 ENSMUST00000079721 En1 protein_coding Interval_100321 chr2 168373576 168373982 + 0 NA Intergenic Intergenic 38079 ENSMUSG00000064961.1 ENSMUSG00000064961 ENSMUST00000083027 Gm22704 snoRNA Interval_96365 chr2 121995845 121996533 + 0 NA intron (ENSMUSG00000033411.16, intron 8 of 12) protein_coding-intron (ENSMUSG00000033411.16, intron 8 of 12) -32453 ENSMUSG00000104603.1 ENSMUSG00000104603 ENSMUST00000197244 Gm47314 miRNA Interval_129573 chr5 121061780 121062005 + 0 NA Intergenic Intergenic -51812 ENSMUSG00000029608.10 ENSMUSG00000029608 ENSMUST00000200792 Rph3a protein_coding Interval_156858 chr8 61270029 61270305 + 0 NA intron (ENSMUSG00000031642.9, intron 2 of 10) protein_coding-intron (ENSMUSG00000031642.9, intron 2 of 11) 18705 ENSMUSG00000099419.1 ENSMUSG00000099419 ENSMUST00000188654 1700001D01Rik antisense Interval_165800 chr9 53257635 53258444 + 0 NA Intergenic Intergenic -6576 ENSMUSG00000032048.3 ENSMUSG00000032048 ENSMUST00000034550 4930510E17Rik lincRNA Interval_67493 chr16 49874661 49875085 + 0 NA intron (ENSMUSG00000055447.19, intron 3 of 11) protein_coding-intron (ENSMUSG00000055447.19, intron 3 of 9) 19228 ENSMUSG00000055447.19 ENSMUSG00000055447 ENSMUST00000229104 Cd47 protein_coding Interval_79135 chr18 24868302 24870549 + 0 NA intron (ENSMUSG00000034295.10, intron 3 of 24) protein_coding-intron (ENSMUSG00000034295.10, intron 3 of 26) 108262 ENSMUSG00000088920.1 ENSMUSG00000088920 ENSMUST00000158295 Gm24294 misc_RNA Interval_150202 chr7 107971044 107971258 + 0 NA Intergenic Intergenic 6348 ENSMUSG00000095301.2 ENSMUSG00000095301 ENSMUST00000077249 Olfr476 protein_coding Interval_70771 chr17 14301436 14302620 + 0 NA intron (ENSMUSG00000023886.10, intron 1 of 3) protein_coding-intron (ENSMUSG00000023886.10, intron 1 of 12) 52177 ENSMUSG00000117254.1 ENSMUSG00000117254 ENSMUST00000233271 Gm34567 lincRNA Interval_3128 chr1 53765448 53765668 + 0 NA intron (ENSMUSG00000026094.14, intron 3 of 5) protein_coding-intron (ENSMUSG00000026094.14, intron 4 of 7) -2865 ENSMUSG00000026094.14 ENSMUSG00000026094 ENSMUST00000185920 Stk17b protein_coding Interval_66155 chr16 31992588 31993649 + 0 NA intron (ENSMUSG00000022772.12, intron 1 of 9) protein_coding-intron (ENSMUSG00000022772.12, intron 1 of 9) -1250 ENSMUSG00000080928.1 ENSMUSG00000080928 ENSMUST00000119503 Hmgb1-ps6 processed_pseudogene Interval_88473 chr2 5421017 5421372 + 0 NA intron (ENSMUSG00000039145.16, intron 3 of 10) protein_coding-intron (ENSMUSG00000039145.16, intron 3 of 10) 137544 ENSMUSG00000080820.1 ENSMUSG00000080820 ENSMUST00000117204 Gm13197 processed_pseudogene Interval_81401 chr18 60521477 60522228 + 0 NA Intergenic Intergenic -16578 ENSMUSG00000024603.8 ENSMUSG00000024603 ENSMUST00000224671 Dctn4 protein_coding Interval_79162 chr18 25168148 25169570 + 0 NA promoter-TSS (ENSMUSG00000033632.16) protein_coding-promoter-TSS (ENSMUSG00000033632.16) -161 ENSMUSG00000033632.16 ENSMUSG00000033632 ENSMUST00000100131 AW554918 protein_coding Interval_70265 chr17 7826859 7828218 + 0 NA promoter-TSS (ENSMUSG00000071984.11) protein_coding-promoter-TSS (ENSMUSG00000071984.11) -236 ENSMUSG00000071984.11 ENSMUSG00000071984 ENSMUST00000167580 Fndc1 protein_coding Interval_82208 chr18 69111569 69111771 + 0 NA Intergenic Intergenic 62450 ENSMUSG00000088166.1 ENSMUSG00000088166 ENSMUST00000157541 Gm23536 rRNA Interval_161435 chr8 120449644 120450260 + 0 NA intron (ENSMUSG00000031822.20, intron 2 of 2) protein_coding-intron (ENSMUSG00000092329.1, intron 1 of 15) -6403 ENSMUSG00000080549.2 ENSMUSG00000080549 ENSMUST00000116899 Gm22715 miRNA Interval_67959 chr16 60994243 60994461 + 0 NA Intergenic Intergenic -64409 ENSMUSG00000090882.1 ENSMUSG00000090882 ENSMUST00000165245 Gm17065 processed_pseudogene Interval_119760 chr4 139757033 139758655 + 0 NA intron (ENSMUSG00000028736.13, intron 7 of 8) protein_coding-intron (ENSMUSG00000028736.13, intron 7 of 8) 75163 ENSMUSG00000028736.13 ENSMUSG00000028736 ENSMUST00000174681 Pax7 protein_coding Interval_173756 chrX 103477410 103477948 + 0 NA exon (ENSMUSG00000086503.4, exon 1 of 7) lincRNA-exon (ENSMUSG00000086503.4, exon 1 of 7) -3267 ENSMUSG00000098262.1 ENSMUSG00000098262 ENSMUST00000184872 Gm27520 misc_RNA Interval_71820 chr17 26288208 26288501 + 0 NA Intergenic Intergenic -1293 ENSMUSG00000084893.3 ENSMUSG00000084893 ENSMUST00000128900 Hba-ps4 unprocessed_pseudogene Interval_9494 chr1 157768419 157768757 + 0 NA Intergenic Intergenic -146452 ENSMUSG00000103962.1 ENSMUSG00000103962 ENSMUST00000193203 Gm38213 processed_pseudogene Interval_58932 chr15 40143926 40144587 + 0 NA intron (ENSMUSG00000094112.2, intron 2 of 3) protein_coding-intron (ENSMUSG00000094112.2, intron 1 of 2) 9891 ENSMUSG00000094112.2 ENSMUSG00000094112 ENSMUST00000179120 9330182O14Rik protein_coding Interval_1177 chr1 16631123 16632393 + 0 NA Intergenic Intergenic -12446 ENSMUSG00000025939.19 ENSMUSG00000025939 ENSMUST00000132919 Ube2w protein_coding Interval_152724 chr7 136893990 136895663 + 0 NA intron (ENSMUSG00000054612.4, intron 1 of 4) protein_coding-intron (ENSMUSG00000054612.4, intron 1 of 4) 212 ENSMUSG00000054612.4 ENSMUSG00000054612 ENSMUST00000081510 Mgmt protein_coding Interval_118067 chr4 128736911 128738453 + 0 NA intron (ENSMUSG00000028796.17, intron 1 of 5) protein_coding-intron (ENSMUSG00000028796.17, intron 9 of 14) -17682 ENSMUSG00000028794.13 ENSMUSG00000028794 ENSMUST00000030585 A3galt2 protein_coding Interval_129579 chr5 121094764 121094965 + 0 NA Intergenic Intergenic 48771 ENSMUSG00000043733.14 ENSMUSG00000043733 ENSMUST00000148871 Ptpn11 protein_coding Interval_141717 chr6 134008230 134009874 + 0 NA Intergenic Intergenic -64302 ENSMUSG00000108214.1 ENSMUSG00000108214 ENSMUST00000204995 Gm43982 TEC Interval_155456 chr8 33698157 33700192 + 0 NA Intergenic Intergenic 7373 ENSMUSG00000088856.1 ENSMUSG00000088856 ENSMUST00000158231 Gm24727 snoRNA Interval_48299 chr13 97937732 97939893 + 0 NA intron (ENSMUSG00000021662.11, intron 30 of 34) protein_coding-intron (ENSMUSG00000021662.11, intron 31 of 35) -62150 ENSMUSG00000114474.1 ENSMUSG00000114474 ENSMUST00000225575 Gm34388 lincRNA Interval_173280 chrX 75965487 75967130 + 0 NA Intergenic Intergenic 6815 ENSMUSG00000081106.1 ENSMUSG00000081106 ENSMUST00000121143 Gm7155 processed_pseudogene Interval_112075 chr4 34368316 34369145 + 0 NA Intergenic Intergenic 12251 ENSMUSG00000081384.1 ENSMUSG00000081384 ENSMUST00000121657 Gm12752 processed_pseudogene Interval_17069 chr10 71104858 71105392 + 0 NA intron (ENSMUSG00000014329.14, intron 1 of 20) protein_coding-intron (ENSMUSG00000014329.14, intron 1 of 21) 22249 ENSMUSG00000090212.1 ENSMUSG00000090212 ENSMUST00000160178 Gm15647 antisense Interval_147766 chr7 73452296 73452978 + 0 NA intron (ENSMUSG00000078671.11, intron 5 of 5) protein_coding-intron (ENSMUSG00000078671.11, intron 5 of 5) 7996 ENSMUSG00000108741.1 ENSMUSG00000108741 ENSMUST00000206316 Gm44553 TEC Interval_60292 chr15 72516875 72517378 + 0 NA intron (ENSMUSG00000036760.7, intron 1 of 1) protein_coding-intron (ENSMUSG00000036760.7, intron 1 of 1) -26107 ENSMUSG00000095149.1 ENSMUSG00000095149 ENSMUST00000179578 Gm24390 snRNA Interval_108502 chr3 127758970 127759725 + 0 NA intron (ENSMUSG00000028028.11, intron 2 of 2) protein_coding-intron (ENSMUSG00000028028.11, intron 1 of 13) 27753 ENSMUSG00000088537.1 ENSMUSG00000088537 ENSMUST00000157912 Gm23279 rRNA Interval_7341 chr1 129885444 129885697 + 0 NA intron (ENSMUSG00000042581.14, intron 12 of 27) protein_coding-intron (ENSMUSG00000042581.14, intron 12 of 15) 24755 ENSMUSG00000103803.1 ENSMUSG00000103803 ENSMUST00000193851 Gm37064 TEC Interval_95298 chr2 105910489 105911057 + 0 NA intron (ENSMUSG00000042670.5, intron 2 of 6) protein_coding-intron (ENSMUSG00000042670.5, intron 2 of 6) 6135 ENSMUSG00000042670.5 ENSMUSG00000042670 ENSMUST00000037499 Immp1l protein_coding Interval_104774 chr3 72858482 72859259 + 0 NA Intergenic Intergenic 92839 ENSMUSG00000027790.14 ENSMUSG00000027790 ENSMUST00000170445 Sis protein_coding Interval_118542 chr4 132387574 132388264 + 0 NA intron (ENSMUSG00000066043.13, intron 2 of 5) protein_coding-intron (ENSMUSG00000066043.13, intron 2 of 12) -20390 ENSMUSG00000096350.1 ENSMUSG00000096350 ENSMUST00000175120 Gm25707 miRNA Interval_114249 chr4 70046970 70047167 + 0 NA promoter-TSS (ENSMUSG00000082368.1) processed_pseudogene-promoter-TSS (ENSMUSG00000082368.1) -89 ENSMUSG00000082368.1 ENSMUSG00000082368 ENSMUST00000118903 Gm11225 processed_pseudogene Interval_124637 chr5 52643982 52645549 + 0 NA intron (ENSMUSG00000029173.12, intron 10 of 10) protein_coding-intron (ENSMUSG00000029173.12, intron 10 of 10) 3715 ENSMUSG00000029173.12 ENSMUSG00000029173 ENSMUST00000123856 Sepsecs protein_coding Interval_29835 chr11 87157223 87157426 + 0 NA intron (ENSMUSG00000018548.15, intron 8 of 23) protein_coding-intron (ENSMUSG00000018548.15, intron 8 of 23) -30366 ENSMUSG00000085310.7 ENSMUSG00000085310 ENSMUST00000155828 Gm11491 antisense Interval_19059 chr10 94128957 94129191 + 0 NA intron (ENSMUSG00000020021.4, intron 14 of 20) protein_coding-intron (ENSMUSG00000020021.4, intron 14 of 20) -18949 ENSMUSG00000005897.14 ENSMUSG00000005897 ENSMUST00000099343 Nr2c1 protein_coding Interval_100058 chr2 166837685 166837963 + 0 NA intron (ENSMUSG00000074582.10, intron 4 of 5) protein_coding-intron (ENSMUSG00000074582.10, intron 6 of 38) 10167 ENSMUSG00000074582.10 ENSMUSG00000074582 ENSMUST00000144847 Arfgef2 protein_coding Interval_58284 chr15 31625368 31626448 + 0 NA Intergenic Intergenic 3936 ENSMUSG00000114995.1 ENSMUSG00000114995 ENSMUST00000227896 Gm49284 TEC Interval_144244 chr7 23800617 23801340 + 0 NA exon (ENSMUSG00000109310.1, exon 1 of 1) processed_pseudogene-exon (ENSMUSG00000109310.1, exon 1 of 1) 104 ENSMUSG00000109310.1 ENSMUSG00000109310 ENSMUST00000208876 Gm44576 processed_pseudogene Interval_174207 chrX 139678874 139679469 + 0 NA Intergenic Intergenic -1682 ENSMUSG00000082018.2 ENSMUSG00000082018 ENSMUST00000118789 Gm6322 processed_pseudogene Interval_35733 chr12 28716742 28718225 + 0 NA intron (ENSMUSG00000020628.16, intron 5 of 6) protein_coding-intron (ENSMUSG00000020628.16, intron 5 of 11) 32946 ENSMUSG00000020628.16 ENSMUSG00000020628 ENSMUST00000221335 Trappc12 protein_coding Interval_8765 chr1 150666345 150666569 + 0 NA exon (ENSMUSG00000093650.2, exon 2 of 2) antisense-exon (ENSMUSG00000093650.2, exon 2 of 2) 41158 ENSMUSG00000093650.2 ENSMUSG00000093650 ENSMUST00000177268 Gm20631 antisense Interval_24412 chr11 33078216 33078736 + 0 NA intron (ENSMUSG00000087318.1, intron 3 of 3) lincRNA-intron (ENSMUSG00000087318.1, intron 3 of 3) 9925 ENSMUSG00000087318.1 ENSMUSG00000087318 ENSMUST00000147896 Gm12114 lincRNA Interval_113049 chr4 47225912 47226367 + 0 NA intron (ENSMUSG00000028339.17, intron 2 of 39) protein_coding-intron (ENSMUSG00000028339.17, intron 2 of 38) -17680 ENSMUSG00000087500.1 ENSMUSG00000087500 ENSMUST00000153083 Gm12426 antisense Interval_172303 chrX 12759041 12759300 + 0 NA intron (ENSMUSG00000064127.13, intron 1 of 27) protein_coding-intron (ENSMUSG00000064127.13, intron 1 of 16) -3374 ENSMUSG00000085891.7 ENSMUSG00000085891 ENSMUST00000151112 Gm14634 processed_transcript Interval_99582 chr2 163353612 163354409 + 0 NA intron (ENSMUSG00000017817.11, intron 3 of 6) protein_coding-intron (ENSMUSG00000017817.11, intron 2 of 5) 43983 ENSMUSG00000017817.11 ENSMUSG00000017817 ENSMUST00000109425 Jph2 protein_coding Interval_45283 chr13 53963272 53963520 + 0 NA Intergenic Intergenic -5548 ENSMUSG00000113882.1 ENSMUSG00000113882 ENSMUST00000222780 Gm48550 lincRNA Interval_151344 chr7 121280119 121281268 + 0 NA intron (ENSMUSG00000108627.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000108627.1, intron 1 of 1) -21298 ENSMUSG00000108697.1 ENSMUSG00000108697 ENSMUST00000206668 4930486N12Rik TEC Interval_113487 chr4 55310285 55311043 + 0 NA Intergenic Intergenic -10819 ENSMUSG00000077403.2 ENSMUSG00000077403 ENSMUST00000104215 Gm25419 snoRNA Interval_128018 chr5 110312766 110314275 + 0 NA intron (ENSMUSG00000007080.14, intron 29 of 48) protein_coding-intron (ENSMUSG00000007080.14, intron 29 of 48) -3524 ENSMUSG00000007080.14 ENSMUSG00000007080 ENSMUST00000141506 Pole protein_coding Interval_158283 chr8 80813278 80814332 + 0 NA intron (ENSMUSG00000031714.9, intron 1 of 10) protein_coding-intron (ENSMUSG00000031714.9, intron 1 of 9) 17079 ENSMUSG00000031714.9 ENSMUSG00000031714 ENSMUST00000211018 Gab1 protein_coding Interval_126906 chr5 96979514 96980789 + 0 NA Intergenic Intergenic 17213 ENSMUSG00000105006.1 ENSMUSG00000105006 ENSMUST00000195892 Gm9484 lincRNA Interval_104377 chr3 64790685 64791357 + 0 NA intron (ENSMUSG00000097538.1, intron 1 of 8) protein_coding-intron (ENSMUSG00000062200.14, intron 1 of 4) -20364 ENSMUSG00000062200.14 ENSMUSG00000062200 ENSMUST00000050123 Vmn2r7 protein_coding Interval_84348 chr19 10272734 10273250 + 0 NA intron (ENSMUSG00000035735.10, intron 1 of 19) protein_coding-intron (ENSMUSG00000035735.10, intron 1 of 19) -16121 ENSMUSG00000035735.10 ENSMUSG00000035735 ENSMUST00000156361 Dagla protein_coding Interval_34010 chr11 119989142 119992081 + 0 NA intron (ENSMUSG00000025372.16, intron 6 of 14) protein_coding-intron (ENSMUSG00000025372.16, intron 6 of 13) -24156 ENSMUSG00000105524.1 ENSMUSG00000105524 ENSMUST00000198674 Mir3065 miRNA Interval_150554 chr7 112377107 112378403 + 0 NA intron (ENSMUSG00000038244.14, intron 5 of 12) protein_coding-intron (ENSMUSG00000038244.14, intron 2 of 6) 28361 ENSMUSG00000038244.14 ENSMUSG00000038244 ENSMUST00000140202 Mical2 protein_coding Interval_165311 chr9 46194438 46194654 + 0 NA intron (ENSMUSG00000034135.15, intron 4 of 20) protein_coding-intron (ENSMUSG00000034135.15, intron 7 of 22) -34175 ENSMUSG00000032083.8 ENSMUSG00000032083 ENSMUST00000132155 Apoa1 protein_coding Interval_20606 chr10 119362710 119363853 + 0 NA Intergenic Intergenic 20789 ENSMUSG00000112199.1 ENSMUSG00000112199 ENSMUST00000218187 Gm19090 processed_pseudogene Interval_51418 chr14 27384298 27385053 + 0 NA intron (ENSMUSG00000021895.10, intron 8 of 13) protein_coding-intron (ENSMUSG00000021895.10, intron 5 of 10) -3825 ENSMUSG00000093034.1 ENSMUSG00000093034 ENSMUST00000175293 Gm23633 miRNA Interval_56514 chr14 119711100 119711790 + 0 NA intron (ENSMUSG00000053465.6, intron 1 of 1) protein_coding-intron (ENSMUSG00000053465.6, intron 1 of 1) -37780 ENSMUSG00000100274.1 ENSMUSG00000100274 ENSMUST00000188582 1700006F04Rik sense_intronic Interval_26126 chr11 54603265 54603519 + 0 NA intron (ENSMUSG00000037533.20, intron 1 of 11) protein_coding-intron (ENSMUSG00000037533.20, intron 6 of 28) -22947 ENSMUSG00000037533.20 ENSMUSG00000037533 ENSMUST00000136494 Rapgef6 protein_coding Interval_146241 chr7 44913096 44914242 + 0 NA intron (ENSMUSG00000060279.14, intron 4 of 22) protein_coding-intron (ENSMUSG00000060279.14, intron 4 of 23) -11975 ENSMUSG00000060279.14 ENSMUSG00000060279 ENSMUST00000208285 Ap2a1 protein_coding Interval_120691 chr4 150132830 150133244 + 0 NA intron (ENSMUSG00000028976.10, intron 1 of 4) protein_coding-intron (ENSMUSG00000028976.10, intron 6 of 13) -6516 ENSMUSG00000028976.10 ENSMUSG00000028976 ENSMUST00000151504 Slc2a5 protein_coding Interval_18497 chr10 86747745 86748300 + 0 NA intron (ENSMUSG00000044937.15, intron 9 of 15) protein_coding-intron (ENSMUSG00000044937.15, intron 9 of 15) 11136 ENSMUSG00000044937.15 ENSMUSG00000044937 ENSMUST00000219070 Ttc41 protein_coding Interval_70049 chr17 4993937 4996797 + 0 NA exon (ENSMUSG00000069729.14, exon 1 of 19) protein_coding-exon (ENSMUSG00000069729.14, exon 1 of 19) 428 ENSMUSG00000069729.14 ENSMUSG00000069729 ENSMUST00000146703 Arid1b protein_coding Interval_72400 chr17 29608050 29608689 + 0 NA intron (ENSMUSG00000099329.2, intron 1 of 6) processed_transcript-intron (ENSMUSG00000099329.2, intron 1 of 6) 6401 ENSMUSG00000117376.1 ENSMUSG00000117376 ENSMUST00000234617 2010106G04Rik bidirectional_promoter_lncRNA Interval_159634 chr8 95887269 95888710 + 0 NA exon (ENSMUSG00000031672.8, exon 1 of 1) protein_coding-exon (ENSMUSG00000031672.8, exon 1 of 1) 403 ENSMUSG00000031672.8 ENSMUSG00000031672 ENSMUST00000212861 Got2 protein_coding Interval_100908 chr2 173281659 173282121 + 0 NA Intergenic Intergenic 5192 ENSMUSG00000087600.1 ENSMUSG00000087600 ENSMUST00000150185 Pmepa1os antisense Interval_168835 chr9 87814813 87815849 + 0 NA Intergenic Intergenic 45561 ENSMUSG00000102043.1 ENSMUSG00000102043 ENSMUST00000188409 Gm9541 processed_pseudogene Interval_92785 chr2 65423684 65424184 + 0 NA Intergenic Intergenic -47652 ENSMUSG00000088197.1 ENSMUSG00000088197 ENSMUST00000157572 Gm24138 snoRNA Interval_114638 chr4 83374507 83375353 + 0 NA Intergenic Intergenic -8134 ENSMUSG00000087592.1 ENSMUSG00000087592 ENSMUST00000126437 Gm11184 lincRNA Interval_53034 chr14 53709780 53710711 + 0 NA exon (ENSMUSG00000095126.3, exon 2 of 2) TR_V_gene-exon (ENSMUSG00000095126.3, exon 2 of 2) 343 ENSMUSG00000095126.3 ENSMUSG00000095126 ENSMUST00000103638 Trav6-7-dv9 TR_V_gene Interval_35246 chr12 18816798 18817940 + 0 NA Intergenic Intergenic -36471 ENSMUSG00000113778.1 ENSMUSG00000113778 ENSMUST00000222888 Gm40847 processed_transcript Interval_112886 chr4 45819034 45820289 + 0 NA intron (ENSMUSG00000035551.6, intron 1 of 4) protein_coding-intron (ENSMUSG00000035551.6, intron 1 of 4) -3298 ENSMUSG00000035551.6 ENSMUSG00000035551 ENSMUST00000145102 Igfbpl1 protein_coding Interval_108801 chr3 131587621 131588024 + 0 NA intron (ENSMUSG00000028032.13, intron 8 of 14) protein_coding-intron (ENSMUSG00000028032.13, intron 5 of 11) 22923 ENSMUSG00000028032.13 ENSMUSG00000028032 ENSMUST00000196638 Papss1 protein_coding Interval_132162 chr5 143017022 143017739 + 0 NA promoter-TSS (ENSMUSG00000045078.12) protein_coding-promoter-TSS (ENSMUSG00000045078.12) 32663 ENSMUSG00000106543.1 ENSMUSG00000106543 ENSMUST00000199336 Gm43378 sense_intronic Interval_71716 chr17 25654855 25656072 + 0 NA TTS (ENSMUSG00000002279.19) protein_coding-TTS (ENSMUSG00000002279.19) 38757 ENSMUSG00000096451.1 ENSMUSG00000096451 ENSMUST00000180010 Gm22645 snRNA Interval_56921 chr14 123371183 123372112 + 0 NA promoter-TSS (ENSMUSG00000000197.8) protein_coding-promoter-TSS (ENSMUSG00000000197.8) 17723 ENSMUSG00000115674.1 ENSMUSG00000115674 ENSMUST00000227636 Gm49297 TEC Interval_172693 chrX 42761158 42761621 + 0 NA intron (ENSMUSG00000016150.15, intron 11 of 31) protein_coding-intron (ENSMUSG00000016150.15, intron 12 of 32) -79503 ENSMUSG00000077558.1 ENSMUSG00000077558 ENSMUST00000104370 Gm23705 snoRNA Interval_106675 chr3 98411337 98411559 + 0 NA exon (ENSMUSG00000050064.14, exon 2 of 2) protein_coding-exon (ENSMUSG00000050064.14, exon 2 of 2) 28987 ENSMUSG00000050064.14 ENSMUSG00000050064 ENSMUST00000178372 Zfp697 protein_coding Interval_21317 chr10 127914833 127915374 + 0 NA Intergenic Intergenic -5966 ENSMUSG00000085993.2 ENSMUSG00000085993 ENSMUST00000137042 Gm15905 processed_pseudogene Interval_78369 chr18 12216060 12216864 + 0 NA intron (ENSMUSG00000024413.14, intron 4 of 24) protein_coding-intron (ENSMUSG00000024413.14, intron 4 of 24) -22192 ENSMUSG00000024413.14 ENSMUSG00000024413 ENSMUST00000144435 Npc1 protein_coding Interval_95932 chr2 118532396 118533096 + 0 NA intron (ENSMUSG00000040093.16, intron 1 of 1) protein_coding-intron (ENSMUSG00000040093.16, intron 4 of 4) 12570 ENSMUSG00000040093.16 ENSMUSG00000040093 ENSMUST00000138342 Bmf protein_coding Interval_81929 chr18 65944522 65944924 + 0 NA Intergenic Intergenic -5617 ENSMUSG00000024518.4 ENSMUSG00000024518 ENSMUST00000237506 Rax protein_coding Interval_23380 chr11 22063516 22064389 + 0 NA intron (ENSMUSG00000042302.14, intron 16 of 24) protein_coding-intron (ENSMUSG00000042302.14, intron 15 of 23) -62242 ENSMUSG00000005917.15 ENSMUSG00000005917 ENSMUST00000147486 Otx1 protein_coding Interval_88732 chr2 10069982 10070217 + 0 NA intron (ENSMUSG00000025781.14, intron 1 of 9) protein_coding-intron (ENSMUSG00000025781.14, intron 1 of 8) 5681 ENSMUSG00000077733.1 ENSMUSG00000077733 ENSMUST00000104545 Gm23608 snoRNA Interval_130223 chr5 125040291 125041028 + 0 NA intron (ENSMUSG00000029478.16, intron 7 of 17) protein_coding-intron (ENSMUSG00000029478.16, intron 22 of 45) -15598 ENSMUSG00000029478.16 ENSMUSG00000029478 ENSMUST00000199561 Ncor2 protein_coding Interval_132962 chr5 148980599 148980976 + 0 NA intron (ENSMUSG00000106892.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000085237.2, intron 1 of 1) -10665 ENSMUSG00000108207.2 ENSMUSG00000108207 ENSMUST00000204941 1810059H22Rik processed_transcript Interval_161713 chr8 122273094 122273599 + 0 NA TTS (ENSMUSG00000043903.4) protein_coding-TTS (ENSMUSG00000043903.4) 14726 ENSMUSG00000043903.4 ENSMUSG00000043903 ENSMUST00000055537 Zfp469 protein_coding Interval_58297 chr15 31946340 31947387 + 0 NA Intergenic Intergenic -103088 ENSMUSG00000115561.1 ENSMUSG00000115561 ENSMUST00000227417 Gm49285 TEC Interval_57840 chr15 22923197 22923574 + 0 NA intron (ENSMUSG00000040420.15, intron 1 of 6) protein_coding-intron (ENSMUSG00000040420.15, intron 1 of 6) -12102 ENSMUSG00000091194.1 ENSMUSG00000091194 ENSMUST00000169624 Gm19840 processed_pseudogene Interval_153957 chr8 11481901 11482267 + 0 NA Intergenic Intergenic -3374 ENSMUSG00000031504.6 ENSMUSG00000031504 ENSMUST00000033900 Rab20 protein_coding Interval_86857 chr19 44406229 44406548 + 0 NA TTS (ENSMUSG00000037071.3) protein_coding-TTS (ENSMUSG00000037071.3) 302 ENSMUSG00000037071.3 ENSMUSG00000037071 ENSMUST00000235741 Scd1 protein_coding Interval_83642 chr19 3424785 3425001 + 0 NA Intergenic Intergenic -10349 ENSMUSG00000024907.7 ENSMUSG00000024907 ENSMUST00000025842 Gal protein_coding Interval_147281 chr7 65453489 65454920 + 0 NA intron (ENSMUSG00000030516.14, intron 2 of 4) protein_coding-intron (ENSMUSG00000030516.14, intron 2 of 4) 27017 ENSMUSG00000108533.1 ENSMUSG00000108533 ENSMUST00000207008 Gm44792 TEC Interval_165987 chr9 55224517 55226426 + 0 NA exon (ENSMUSG00000032311.17, exon 9 of 9) protein_coding-exon (ENSMUSG00000032311.17, exon 9 of 9) 16485 ENSMUSG00000032309.15 ENSMUSG00000032309 ENSMUST00000133795 Fbxo22 protein_coding Interval_47371 chr13 82151952 82152319 + 0 NA intron (ENSMUSG00000114461.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000114461.1, intron 1 of 2) 62378 ENSMUSG00000114461.1 ENSMUSG00000114461 ENSMUST00000224753 Gm48155 lincRNA Interval_2197 chr1 36962358 36963343 + 0 NA Intergenic Intergenic -4423 ENSMUSG00000080054.3 ENSMUSG00000080054 ENSMUST00000116168 Rpl12-ps1 processed_pseudogene Interval_142435 chr6 142244622 142244948 + 0 NA intron (ENSMUSG00000063975.13, intron 8 of 12) protein_coding-intron (ENSMUSG00000063975.13, intron 10 of 14) -5958 ENSMUSG00000088239.1 ENSMUSG00000088239 ENSMUST00000157614 Gm25430 misc_RNA Interval_152468 chr7 133168774 133168989 + 0 NA Intergenic Intergenic 40630 ENSMUSG00000109816.1 ENSMUSG00000109816 ENSMUST00000209850 4930483O08Rik lincRNA Interval_9953 chr1 164350051 164350374 + 0 NA TTS (ENSMUSG00000026575.15) protein_coding-TTS (ENSMUSG00000026575.15) 42485 ENSMUSG00000026575.15 ENSMUSG00000026575 ENSMUST00000192710 Nme7 protein_coding Interval_62825 chr15 97253585 97256264 + 0 NA intron (ENSMUSG00000044250.8, intron 1 of 1) protein_coding-intron (ENSMUSG00000044250.8, intron 1 of 5) -7802 ENSMUSG00000048218.6 ENSMUSG00000048218 ENSMUST00000053106 Amigo2 protein_coding Interval_96655 chr2 126875040 126876779 + 0 NA intron (ENSMUSG00000027365.14, intron 1 of 13) protein_coding-intron (ENSMUSG00000027365.14, intron 1 of 38) 11406 ENSMUSG00000081894.1 ENSMUSG00000081894 ENSMUST00000122023 Gm14212 processed_pseudogene Interval_42741 chr13 18840117 18840504 + 0 NA intron (ENSMUSG00000041236.8, intron 16 of 28) protein_coding-intron (ENSMUSG00000041236.8, intron 16 of 28) 60467 ENSMUSG00000041236.8 ENSMUSG00000041236 ENSMUST00000222102 Vps41 protein_coding Interval_117314 chr4 122937733 122938130 + 0 NA Intergenic Intergenic 12098 ENSMUSG00000080929.1 ENSMUSG00000080929 ENSMUST00000119358 Gm12891 processed_pseudogene Interval_173672 chrX 101720335 101721036 + 0 NA intron (ENSMUSG00000118478.1, intron 1 of 4) unitary_pseudogene-intron (ENSMUSG00000118478.1, intron 1 of 4) -11124 ENSMUSG00000084197.1 ENSMUSG00000084197 ENSMUST00000122027 Gm9089 processed_pseudogene Interval_151136 chr7 118758971 118759773 + 0 NA intron (ENSMUSG00000030982.19, intron 7 of 8) protein_coding-intron (ENSMUSG00000030982.19, intron 7 of 30) -8645 ENSMUSG00000109303.1 ENSMUSG00000109303 ENSMUST00000208351 Gm44549 sense_intronic Interval_20126 chr10 115123548 115123826 + 0 NA intron (ENSMUSG00000006764.8, intron 7 of 10) protein_coding-intron (ENSMUSG00000006764.8, intron 7 of 10) 51871 ENSMUSG00000006764.8 ENSMUSG00000006764 ENSMUST00000155794 Tph2 protein_coding Interval_97752 chr2 143808601 143809059 + 0 NA intron (ENSMUSG00000027419.9, intron 11 of 11) protein_coding-intron (ENSMUSG00000027419.9, intron 11 of 11) -12865 ENSMUSG00000087115.7 ENSMUSG00000087115 ENSMUST00000156362 Pcsk2os2 antisense Interval_75650 chr17 69902124 69903111 + 0 NA intron (ENSMUSG00000117233.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000117233.1, intron 1 of 2) 21378 ENSMUSG00000117233.1 ENSMUSG00000117233 ENSMUST00000232745 Gm36594 lincRNA Interval_124649 chr5 52824739 52825550 + 0 NA TTS (ENSMUSG00000029179.14) protein_coding-TTS (ENSMUSG00000029179.14) -30203 ENSMUSG00000029176.13 ENSMUSG00000029176 ENSMUST00000138629 Anapc4 protein_coding Interval_112610 chr4 43552027 43552232 + 0 NA promoter-TSS (ENSMUSG00000028465.16) protein_coding-promoter-TSS (ENSMUSG00000028465.16) -4482 ENSMUSG00000028465.16 ENSMUSG00000028465 ENSMUST00000123985 Tln1 protein_coding Interval_124198 chr5 40003427 40004140 + 0 NA Intergenic Intergenic -18155 ENSMUSG00000107070.1 ENSMUSG00000107070 ENSMUST00000200925 Gm35191 lincRNA Interval_142038 chr6 136683423 136684481 + 0 NA Intergenic Intergenic 11331 ENSMUSG00000107850.1 ENSMUSG00000107850 ENSMUST00000203395 Gm4714 processed_pseudogene Interval_137444 chr6 72492662 72494070 + 0 NA Intergenic Intergenic 26670 ENSMUSG00000052631.15 ENSMUSG00000052631 ENSMUST00000159577 Sh2d6 protein_coding Interval_102817 chr3 31423418 31423626 + 0 NA Intergenic Intergenic 82510 ENSMUSG00000103998.1 ENSMUSG00000103998 ENSMUST00000193926 Gm38025 lincRNA Interval_89505 chr2 21261475 21262213 + 0 NA Intergenic Intergenic 17739 ENSMUSG00000084071.1 ENSMUSG00000084071 ENSMUST00000117483 Gm13378 processed_pseudogene Interval_141097 chr6 124953669 124955963 + 0 NA Intergenic Intergenic -3051 ENSMUSG00000107578.1 ENSMUSG00000107578 ENSMUST00000205209 Gm32536 processed_pseudogene Interval_144933 chr7 28990752 28991869 + 0 NA exon (ENSMUSG00000037337.11, exon 16 of 32) protein_coding-exon (ENSMUSG00000037337.11, exon 16 of 32) -10232 ENSMUSG00000037337.11 ENSMUSG00000037337 ENSMUST00000208784 Map4k1 protein_coding Interval_61744 chr15 83756717 83757147 + 0 NA Intergenic Intergenic -35082 ENSMUSG00000041708.12 ENSMUSG00000041708 ENSMUST00000148868 Mpped1 protein_coding Interval_144986 chr7 29280543 29282389 + 0 NA intron (ENSMUSG00000074227.12, intron 1 of 6) protein_coding-intron (ENSMUSG00000074227.12, intron 1 of 6) -7842 ENSMUSG00000037166.5 ENSMUSG00000037166 ENSMUST00000048187 Ppp1r14a protein_coding Interval_16343 chr10 62358639 62359082 + 0 NA promoter-TSS (ENSMUSG00000037012.18) protein_coding-promoter-TSS (ENSMUSG00000037012.18) 18253 ENSMUSG00000085347.1 ENSMUSG00000085347 ENSMUST00000142968 Hk1os antisense Interval_172378 chrX 15322193 15323486 + 0 NA Intergenic Intergenic -42340 ENSMUSG00000082838.1 ENSMUSG00000082838 ENSMUST00000118490 Gm14519 processed_pseudogene Interval_22891 chr11 17140703 17141138 + 0 NA Intergenic Intergenic -41187 ENSMUSG00000078970.5 ENSMUSG00000078970 ENSMUST00000046955 Wdr92 protein_coding Interval_167769 chr9 72634853 72635422 + 0 NA Intergenic Intergenic 1690 ENSMUSG00000064735.1 ENSMUSG00000064735 ENSMUST00000082801 Gm23057 snRNA Interval_75249 chr17 65369972 65370534 + 0 NA intron (ENSMUSG00000045036.15, intron 11 of 12) protein_coding-intron (ENSMUSG00000045036.15, intron 14 of 15) 26037 ENSMUSG00000117012.1 ENSMUSG00000117012 ENSMUST00000232744 Gm18992 processed_pseudogene Interval_135031 chr6 34833876 34834569 + 0 NA intron (ENSMUSG00000038836.15, intron 15 of 17) protein_coding-intron (ENSMUSG00000038836.15, intron 16 of 19) -13323 ENSMUSG00000082446.1 ENSMUSG00000082446 ENSMUST00000118782 Gm13863 processed_pseudogene Interval_43952 chr13 38331048 38331747 + 0 NA intron (ENSMUSG00000114525.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000114525.1, intron 1 of 1) -1175 ENSMUSG00000114861.1 ENSMUSG00000114861 ENSMUST00000225541 Gm47991 processed_pseudogene Interval_141819 chr6 134700072 134701161 + 0 NA promoter-TSS (ENSMUSG00000042992.15) protein_coding-promoter-TSS (ENSMUSG00000042992.15) -934 ENSMUSG00000042992.15 ENSMUSG00000042992 ENSMUST00000204133 Borcs5 protein_coding Interval_172277 chrX 12259010 12260678 + 0 NA Intergenic Intergenic -79777 ENSMUSG00000083486.1 ENSMUSG00000083486 ENSMUST00000119545 Gm14521 processed_pseudogene Interval_89007 chr2 14341604 14341858 + 0 NA Intergenic Intergenic -3946 ENSMUSG00000103475.1 ENSMUSG00000103475 ENSMUST00000195680 Gm37697 TEC Interval_133774 chr6 11997279 11998292 + 0 NA intron (ENSMUSG00000029629.17, intron 14 of 17) protein_coding-intron (ENSMUSG00000029629.17, intron 14 of 15) -46594 ENSMUSG00000029629.17 ENSMUSG00000029629 ENSMUST00000214543 Phf14 protein_coding Interval_135419 chr6 39263999 39265166 + 0 NA Intergenic Intergenic 1360 ENSMUSG00000089422.1 ENSMUSG00000089422 ENSMUST00000158797 Gm26008 snRNA Interval_87189 chr19 46733566 46733756 + 0 NA intron (ENSMUSG00000003559.8, intron 8 of 8) protein_coding-intron (ENSMUSG00000003559.8, intron 10 of 10) 25693 ENSMUSG00000003559.8 ENSMUSG00000003559 ENSMUST00000235266 As3mt protein_coding Interval_122062 chr5 15806701 15807399 + 0 NA TTS (ENSMUSG00000105515.1) TEC-TTS (ENSMUSG00000105515.1) 1486 ENSMUSG00000105515.1 ENSMUSG00000105515 ENSMUST00000196805 Gm42454 TEC Interval_55343 chr14 84071023 84071441 + 0 NA intron (ENSMUSG00000115043.1, intron 2 of 3) lincRNA-intron (ENSMUSG00000115043.1, intron 2 of 3) 4058 ENSMUSG00000115043.1 ENSMUSG00000115043 ENSMUST00000228897 Gm32455 lincRNA Interval_153258 chr7 142983411 142984596 + 0 NA Intergenic Intergenic 6775 ENSMUSG00000052281.14 ENSMUSG00000052281 ENSMUST00000131740 Tspan32os antisense Interval_140086 chr6 113966423 113966681 + 0 NA intron (ENSMUSG00000030302.16, intron 2 of 3) protein_coding-intron (ENSMUSG00000030302.16, intron 2 of 21) 28813 ENSMUSG00000087053.1 ENSMUSG00000087053 ENSMUST00000147045 Gm15082 antisense Interval_124030 chr5 37423476 37423727 + 0 NA intron (ENSMUSG00000050248.11, intron 19 of 19) protein_coding-intron (ENSMUSG00000050248.11, intron 19 of 19) -18738 ENSMUSG00000057290.5 ENSMUSG00000057290 ENSMUST00000079794 Gm15732 processed_pseudogene Interval_66959 chr16 38809881 38810400 + 0 NA Intergenic Intergenic -3850 ENSMUSG00000081444.1 ENSMUSG00000081444 ENSMUST00000120118 Gm15803 processed_pseudogene Interval_59062 chr15 42914266 42914945 + 0 NA Intergenic Intergenic -237856 ENSMUSG00000022309.9 ENSMUSG00000022309 ENSMUST00000227738 Angpt1 protein_coding Interval_167100 chr9 65239702 65240830 + 0 NA Intergenic Intergenic -25557 ENSMUSG00000042254.14 ENSMUSG00000042254 ENSMUST00000141382 Cilp protein_coding Interval_8694 chr1 148622475 148623263 + 0 NA Intergenic Intergenic 28265 ENSMUSG00000101735.1 ENSMUSG00000101735 ENSMUST00000187360 Gm18505 processed_pseudogene Interval_17016 chr10 70447960 70448514 + 0 NA intron (ENSMUSG00000043259.15, intron 2 of 10) protein_coding-intron (ENSMUSG00000043259.15, intron 1 of 13) 7531 ENSMUSG00000043259.15 ENSMUSG00000043259 ENSMUST00000062883 Fam13c protein_coding Interval_25043 chr11 43473904 43475149 + 0 NA intron (ENSMUSG00000046491.10, intron 1 of 2) protein_coding-intron (ENSMUSG00000046491.10, intron 1 of 3) 250 ENSMUSG00000046491.10 ENSMUSG00000046491 ENSMUST00000151912 C1qtnf2 protein_coding Interval_150107 chr7 106616962 106617360 + 0 NA Intergenic Intergenic -13126 ENSMUSG00000073902.5 ENSMUSG00000073902 ENSMUST00000184540 Gm1966 unprocessed_pseudogene Interval_11858 chr1 186456290 186457066 + 0 NA Intergenic Intergenic 102003 ENSMUSG00000103690.1 ENSMUSG00000103690 ENSMUST00000195454 A730004F24Rik lincRNA Interval_118689 chr4 133209402 133209678 + 0 NA TTS (ENSMUSG00000049649.8) protein_coding-TTS (ENSMUSG00000049649.8) 2773 ENSMUSG00000049649.8 ENSMUSG00000049649 ENSMUST00000151025 Gpr3 protein_coding Interval_153051 chr7 141064034 141064650 + 0 NA promoter-TSS (ENSMUSG00000055629.5) protein_coding-promoter-TSS (ENSMUSG00000055629.5) -5933 ENSMUSG00000055629.5 ENSMUSG00000055629 ENSMUST00000210517 B4galnt4 protein_coding Interval_32346 chr11 107096449 107097300 + 0 NA intron (ENSMUSG00000040481.17, intron 3 of 29) protein_coding-intron (ENSMUSG00000040481.17, intron 3 of 27) -49531 ENSMUSG00000040481.17 ENSMUSG00000040481 ENSMUST00000149486 Bptf protein_coding Interval_38071 chr12 75490407 75490931 + 0 NA intron (ENSMUSG00000021051.10, intron 3 of 12) protein_coding-intron (ENSMUSG00000021051.10, intron 4 of 13) 18076 ENSMUSG00000112254.1 ENSMUSG00000112254 ENSMUST00000218033 Gm47690 TEC Interval_11561 chr1 182711505 182711834 + 0 NA Intergenic Intergenic 23939 ENSMUSG00000102688.1 ENSMUSG00000102688 ENSMUST00000192917 Gm37218 lincRNA Interval_96634 chr2 126674572 126676256 + 0 NA promoter-TSS (ENSMUSG00000027361.15) protein_coding-promoter-TSS (ENSMUSG00000027361.15) -502 ENSMUSG00000098024.1 ENSMUSG00000098024 ENSMUST00000182590 Gm27003 antisense Interval_27156 chr11 63454953 63457025 + 0 NA Intergenic Intergenic 42820 ENSMUSG00000085113.1 ENSMUSG00000085113 ENSMUST00000151765 B130011K05Rik lincRNA Interval_7511 chr1 131924661 131924897 + 0 NA intron (ENSMUSG00000026434.12, intron 4 of 6) protein_coding-intron (ENSMUSG00000026434.12, intron 4 of 6) 8191 ENSMUSG00000103975.1 ENSMUSG00000103975 ENSMUST00000195496 Gm37676 TEC Interval_6426 chr1 107925730 107926771 + 0 NA intron (ENSMUSG00000100457.6, intron 1 of 3) lincRNA-intron (ENSMUSG00000100457.6, intron 1 of 4) 8991 ENSMUSG00000100457.6 ENSMUSG00000100457 ENSMUST00000189497 D830032E09Rik lincRNA Interval_137703 chr6 80589467 80590339 + 0 NA intron (ENSMUSG00000052581.13, intron 2 of 2) protein_coding-intron (ENSMUSG00000052581.13, intron 3 of 3) -65126 ENSMUSG00000108173.1 ENSMUSG00000108173 ENSMUST00000204106 Gm44231 TEC Interval_159299 chr8 92996828 92997087 + 0 NA intron (ENSMUSG00000055368.14, intron 13 of 14) protein_coding-intron (ENSMUSG00000055368.14, intron 12 of 13) -14662 ENSMUSG00000109651.1 ENSMUSG00000109651 ENSMUST00000209831 Gm45463 processed_transcript Interval_67350 chr16 47019417 47020149 + 0 NA Intergenic Intergenic -54415 ENSMUSG00000081624.1 ENSMUSG00000081624 ENSMUST00000117218 Gm6912 processed_pseudogene Interval_18965 chr10 93443034 93443295 + 0 NA Intergenic Intergenic 10057 ENSMUSG00000098679.1 ENSMUSG00000098679 ENSMUST00000183565 Mir7688 miRNA Interval_35116 chr12 17405354 17406029 + 0 NA intron (ENSMUSG00000061458.9, intron 16 of 20) protein_coding-intron (ENSMUSG00000061458.9, intron 16 of 20) -30927 ENSMUSG00000113246.1 ENSMUSG00000113246 ENSMUST00000220527 Gm36752 lincRNA Interval_91919 chr2 51458918 51459855 + 0 NA Intergenic Intergenic -21486 ENSMUSG00000086007.1 ENSMUSG00000086007 ENSMUST00000154530 1700057H21Rik lincRNA Interval_148321 chr7 80498981 80499653 + 0 NA intron (ENSMUSG00000030528.12, intron 7 of 14) protein_coding-intron (ENSMUSG00000030528.12, intron 8 of 21) -8470 ENSMUSG00000091989.1 ENSMUSG00000091989 ENSMUST00000166096 Ndufab1-ps processed_pseudogene Interval_133448 chr6 5163782 5164039 + 0 NA exon (ENSMUSG00000032827.15, exon 16 of 16) protein_coding-exon (ENSMUSG00000032827.15, exon 16 of 16) 29874 ENSMUSG00000002588.13 ENSMUSG00000002588 ENSMUST00000176933 Pon1 protein_coding Interval_36813 chr12 54303416 54304001 + 0 NA Intergenic Intergenic 13307 ENSMUSG00000112705.1 ENSMUSG00000112705 ENSMUST00000217997 Gm47552 lincRNA Interval_63980 chr16 4983511 4984344 + 0 NA Intergenic Intergenic 13836 ENSMUSG00000022542.7 ENSMUSG00000022542 ENSMUST00000230878 Septin12 protein_coding Interval_132340 chr5 144312926 144314934 + 0 NA intron (ENSMUSG00000047843.16, intron 3 of 3) protein_coding-intron (ENSMUSG00000038859.7, intron 3 of 13) -25023 ENSMUSG00000038859.7 ENSMUSG00000038859 ENSMUST00000129287 Baiap2l1 protein_coding Interval_154875 chr8 24559812 24560785 + 0 NA intron (ENSMUSG00000031549.16, intron 1 of 9) protein_coding-intron (ENSMUSG00000031549.16, intron 1 of 9) -5701 ENSMUSG00000031549.16 ENSMUSG00000031549 ENSMUST00000138155 Ido2 protein_coding Interval_39043 chr12 84625006 84626251 + 0 NA Intergenic Intergenic -8215 ENSMUSG00000021240.6 ENSMUSG00000021240 ENSMUST00000221070 Abcd4 protein_coding Interval_132451 chr5 145016763 145016980 + 0 NA intron (ENSMUSG00000038770.17, intron 4 of 7) protein_coding-intron (ENSMUSG00000038770.17, intron 4 of 7) -3307 ENSMUSG00000105177.1 ENSMUSG00000105177 ENSMUST00000196761 Gm43563 unprocessed_pseudogene Interval_101334 chr2 180529621 180530986 + 0 NA intron (ENSMUSG00000027568.9, intron 1 of 4) protein_coding-intron (ENSMUSG00000027568.9, intron 1 of 3) 30076 ENSMUSG00000027568.9 ENSMUSG00000027568 ENSMUST00000170448 Ntsr1 protein_coding Interval_31729 chr11 102493948 102494705 + 0 NA intron (ENSMUSG00000034621.14, intron 3 of 5) protein_coding-intron (ENSMUSG00000034621.14, intron 3 of 5) -1717 ENSMUSG00000082487.1 ENSMUSG00000082487 ENSMUST00000117568 Gm11628 processed_pseudogene Interval_15511 chr10 50108920 50109232 + 0 NA Intergenic Intergenic 73918 ENSMUSG00000112349.1 ENSMUSG00000112349 ENSMUST00000219753 Gm48132 processed_pseudogene Interval_107167 chr3 104200290 104202060 + 0 NA promoter-TSS (ENSMUSG00000088479.1) snoRNA-promoter-TSS (ENSMUSG00000088479.1) 65 ENSMUSG00000088479.1 ENSMUSG00000088479 ENSMUST00000157854 Gm23077 snoRNA Interval_126915 chr5 97089927 97090775 + 0 NA exon (ENSMUSG00000034663.13, exon 16 of 16) protein_coding-exon (ENSMUSG00000034663.13, exon 16 of 16) 21092 ENSMUSG00000055725.11 ENSMUSG00000055725 ENSMUST00000132127 Paqr3 protein_coding Interval_20581 chr10 119192754 119193264 + 0 NA Intergenic Intergenic 19600 ENSMUSG00000020114.12 ENSMUSG00000020114 ENSMUST00000126373 Cand1 protein_coding Interval_95141 chr2 104219877 104220529 + 0 NA intron (ENSMUSG00000068373.15, intron 11 of 20) protein_coding-intron (ENSMUSG00000068373.15, intron 11 of 20) 8035 ENSMUSG00000089606.1 ENSMUSG00000089606 ENSMUST00000158981 Gm22501 snoRNA Interval_97224 chr2 132341273 132341640 + 0 NA intron (ENSMUSG00000050558.13, intron 2 of 2) protein_coding-intron (ENSMUSG00000050558.13, intron 2 of 2) 43965 ENSMUSG00000050558.13 ENSMUSG00000050558 ENSMUST00000145995 Prokr2 protein_coding Interval_71604 chr17 24803811 24805068 + 0 NA promoter-TSS (ENSMUSG00000024155.8) protein_coding-promoter-TSS (ENSMUSG00000024155.8) 80 ENSMUSG00000024155.8 ENSMUSG00000024155 ENSMUST00000234455 Meiob protein_coding Interval_73225 chr17 35665869 35668064 + 0 NA promoter-TSS (ENSMUSG00000038838.15) protein_coding-promoter-TSS (ENSMUSG00000038838.15) 1794 ENSMUSG00000001524.14 ENSMUSG00000001524 ENSMUST00000159852 Gtf2h4 protein_coding Interval_139824 chr6 109269094 109269691 + 0 NA Intergenic Intergenic 55150 ENSMUSG00000107641.1 ENSMUSG00000107641 ENSMUST00000205246 Gm32858 processed_pseudogene Interval_103631 chr3 51303252 51303600 + 0 NA promoter-TSS (ENSMUSG00000104200.1) TEC-promoter-TSS (ENSMUSG00000104200.1) -523 ENSMUSG00000104200.1 ENSMUSG00000104200 ENSMUST00000195224 Gm37399 TEC Interval_173201 chrX 74054519 74055112 + 0 NA intron (ENSMUSG00000031393.16, intron 1 of 3) protein_coding-intron (ENSMUSG00000031393.16, intron 1 of 2) 30782 ENSMUSG00000031393.16 ENSMUSG00000031393 ENSMUST00000198358 Mecp2 protein_coding Interval_13091 chr10 11291116 11291637 + 0 NA exon (ENSMUSG00000047648.13, exon 2 of 3) protein_coding-exon (ENSMUSG00000047648.13, exon 2 of 3) 10046 ENSMUSG00000047648.13 ENSMUSG00000047648 ENSMUST00000070300 Fbxo30 protein_coding Interval_48698 chr13 101605476 101605670 + 0 NA TTS (ENSMUSG00000099774.1) lincRNA-TTS (ENSMUSG00000099774.1) 660 ENSMUSG00000099774.1 ENSMUSG00000099774 ENSMUST00000190179 Gm29341 lincRNA Interval_73617 chr17 41221933 41222875 + 0 NA Intergenic Intergenic 121366 ENSMUSG00000117062.1 ENSMUSG00000117062 ENSMUST00000232966 Ldha-ps3 processed_pseudogene Interval_6872 chr1 120252927 120253229 + 0 NA intron (ENSMUSG00000026389.16, intron 2 of 5) protein_coding-intron (ENSMUSG00000026389.16, intron 1 of 4) 12177 ENSMUSG00000026389.16 ENSMUSG00000026389 ENSMUST00000112643 Steap3 protein_coding Interval_106363 chr3 95650508 95654051 + 0 NA Intergenic Intergenic -6578 ENSMUSG00000038612.16 ENSMUSG00000038612 ENSMUST00000178686 Mcl1 protein_coding Interval_20124 chr10 115097279 115097798 + 0 NA intron (ENSMUSG00000006764.8, intron 8 of 10) protein_coding-intron (ENSMUSG00000006764.8, intron 8 of 10) 78020 ENSMUSG00000006764.8 ENSMUSG00000006764 ENSMUST00000155794 Tph2 protein_coding Interval_143437 chr7 6792680 6792892 + 0 NA intron (ENSMUSG00000051527.11, intron 2 of 7) protein_coding-intron (ENSMUSG00000051527.11, intron 2 of 7) -10801 ENSMUSG00000092815.1 ENSMUSG00000092815 ENSMUST00000175074 Mir3099 miRNA Interval_112299 chr4 40197442 40198614 + 0 NA exon (ENSMUSG00000028405.9, exon 21 of 21) protein_coding-exon (ENSMUSG00000028405.9, exon 21 of 21) 34309 ENSMUSG00000028405.9 ENSMUSG00000028405 ENSMUST00000135787 Aco1 protein_coding Interval_71054 chr17 17506616 17506847 + 0 NA Intergenic Intergenic 6388 ENSMUSG00000116532.1 ENSMUSG00000116532 ENSMUST00000232178 Gm5232 processed_pseudogene Interval_158574 chr8 84585486 84585960 + 0 NA intron (ENSMUSG00000034656.18, intron 30 of 48) protein_coding-intron (ENSMUSG00000034656.18, intron 28 of 46) 31461 ENSMUSG00000086067.1 ENSMUSG00000086067 ENSMUST00000127527 Gm16183 antisense Interval_148178 chr7 79659727 79661852 + 0 NA exon (ENSMUSG00000046591.10, exon 1 of 22) protein_coding-exon (ENSMUSG00000046591.10, exon 1 of 22) -10132 ENSMUSG00000046591.10 ENSMUSG00000046591 ENSMUST00000206677 Ticrr protein_coding Interval_22594 chr11 12050180 12050738 + 0 NA Intergenic Intergenic 3844 ENSMUSG00000064802.1 ENSMUSG00000064802 ENSMUST00000082868 Gm24036 snRNA Interval_99138 chr2 157425555 157426745 + 0 NA intron (ENSMUSG00000027646.15, intron 2 of 4) protein_coding-intron (ENSMUSG00000027646.15, intron 1 of 13) 2034 ENSMUSG00000027646.15 ENSMUSG00000027646 ENSMUST00000109529 Src protein_coding Interval_152623 chr7 135464738 135466290 + 0 NA Intergenic Intergenic -20515 ENSMUSG00000109598.1 ENSMUSG00000109598 ENSMUST00000209224 Gm36356 lincRNA Interval_117000 chr4 118899557 118900121 + 0 NA TTS (ENSMUSG00000073768.3) protein_coding-TTS (ENSMUSG00000073768.3) 11242 ENSMUSG00000073768.3 ENSMUSG00000073768 ENSMUST00000094830 Olfr1330 protein_coding Interval_5371 chr1 88091097 88091315 + 0 NA intron (ENSMUSG00000089675.1, intron 1 of 4) protein_coding-intron (ENSMUSG00000090175.1, intron 1 of 4) 3393 ENSMUSG00000089675.1 ENSMUSG00000089675 ENSMUST00000113139 Ugt1a8 protein_coding Interval_102995 chr3 34072706 34073103 + 0 NA exon (ENSMUSG00000105176.1, exon 1 of 1) TEC-exon (ENSMUSG00000105176.1, exon 1 of 1) 2245 ENSMUSG00000105176.1 ENSMUSG00000105176 ENSMUST00000197014 Gm43668 TEC Interval_11369 chr1 181282138 181282565 + 0 NA exon (ENSMUSG00000103260.1, exon 1 of 1) processed_pseudogene-exon (ENSMUSG00000103260.1, exon 1 of 1) 305 ENSMUSG00000103260.1 ENSMUSG00000103260 ENSMUST00000192106 Gm8146 processed_pseudogene Interval_34430 chr12 4116006 4116242 + 0 NA Intergenic Intergenic -16979 ENSMUSG00000020654.15 ENSMUSG00000020654 ENSMUST00000127110 Adcy3 protein_coding Interval_165159 chr9 44908120 44909297 + 0 NA Intergenic Intergenic 10158 ENSMUSG00000038717.8 ENSMUSG00000038717 ENSMUST00000213999 Atp5l protein_coding Interval_169496 chr9 98477564 98477749 + 0 NA Intergenic Intergenic -8459 ENSMUSG00000032454.9 ENSMUSG00000032454 ENSMUST00000188779 Rbp2 protein_coding Interval_55775 chr14 99930872 99931129 + 0 NA intron (ENSMUSG00000072294.5, intron 6 of 7) protein_coding-intron (ENSMUSG00000072294.5, intron 5 of 6) -30609 ENSMUSG00000072294.5 ENSMUSG00000072294 ENSMUST00000226544 Klf12 protein_coding Interval_120000 chr4 141307470 141308067 + 0 NA intron (ENSMUSG00000006445.3, intron 2 of 2) protein_coding-intron (ENSMUSG00000006445.3, intron 2 of 16) -9145 ENSMUSG00000006445.3 ENSMUSG00000006445 ENSMUST00000149002 Epha2 protein_coding Interval_95182 chr2 104579469 104580231 + 0 NA TTS (ENSMUSG00000077236.1) snoRNA-TTS (ENSMUSG00000077236.1) 905 ENSMUSG00000077236.1 ENSMUSG00000077236 ENSMUST00000104048 Gm22439 snoRNA Interval_117611 chr4 125044594 125045047 + 0 NA intron (ENSMUSG00000028869.13, intron 2 of 2) protein_coding-intron (ENSMUSG00000028869.13, intron 8 of 15) -8331 ENSMUSG00000028869.13 ENSMUSG00000028869 ENSMUST00000147550 Gnl2 protein_coding Interval_81369 chr18 59624046 59624531 + 0 NA Intergenic Intergenic 44658 ENSMUSG00000098287.1 ENSMUSG00000098287 ENSMUST00000183687 Mir6355 miRNA Interval_50289 chr14 11672795 11673622 + 0 NA intron (ENSMUSG00000021745.14, intron 1 of 3) protein_coding-intron (ENSMUSG00000021745.14, intron 1 of 29) -94735 ENSMUSG00000114310.1 ENSMUSG00000114310 ENSMUST00000225152 Gm48602 TEC Interval_11794 chr1 185470424 185470761 + 0 NA Intergenic Intergenic -15024 ENSMUSG00000097615.1 ENSMUSG00000097615 ENSMUST00000180623 Gm2061 antisense Interval_61010 chr15 78749060 78750490 + 0 NA Intergenic Intergenic 17389 ENSMUSG00000018169.12 ENSMUSG00000018169 ENSMUST00000128389 Mfng protein_coding Interval_18962 chr10 93429326 93429777 + 0 NA Intergenic Intergenic -3556 ENSMUSG00000098679.1 ENSMUSG00000098679 ENSMUST00000183565 Mir7688 miRNA Interval_142965 chr6 147506360 147506582 + 0 NA intron (ENSMUSG00000030301.17, intron 1 of 4) protein_coding-intron (ENSMUSG00000030301.17, intron 1 of 12) 24838 ENSMUSG00000107793.1 ENSMUSG00000107793 ENSMUST00000203567 4933406L23Rik TEC Interval_112724 chr4 44419273 44420294 + 0 NA Intergenic Intergenic -7188 ENSMUSG00000077587.1 ENSMUSG00000077587 ENSMUST00000104399 Gm24376 snoRNA Interval_75723 chr17 70864224 70866994 + 0 NA intron (ENSMUSG00000100865.2, intron 3 of 3) transcribed_processed_pseudogene-intron (ENSMUSG00000100865.2, intron 3 of 3) -5009 ENSMUSG00000080468.2 ENSMUSG00000080468 ENSMUST00000116818 Mir1195 miRNA Interval_150022 chr7 105035519 105036312 + 0 NA exon (ENSMUSG00000073915.5, exon 1 of 1) protein_coding-exon (ENSMUSG00000073915.5, exon 1 of 1) 3217 ENSMUSG00000073915.5 ENSMUSG00000073915 ENSMUST00000098162 Olfr676 protein_coding Interval_44048 chr13 40509380 40510564 + 0 NA Intergenic Intergenic 13784 ENSMUSG00000114248.1 ENSMUSG00000114248 ENSMUST00000226074 Gm8352 processed_pseudogene Interval_110872 chr4 9269229 9269957 + 0 NA exon (ENSMUSG00000041216.15, exon 1 of 2) protein_coding-exon (ENSMUSG00000041216.15, exon 1 of 2) 300 ENSMUSG00000041216.15 ENSMUSG00000041216 ENSMUST00000135864 Clvs1 protein_coding Interval_131877 chr5 140539657 140540642 + 0 NA Intergenic Intergenic 6243 ENSMUSG00000105845.1 ENSMUSG00000105845 ENSMUST00000198212 Gm42808 lincRNA Interval_116678 chr4 116612475 116613093 + 0 NA intron (ENSMUSG00000028693.15, intron 3 of 12) protein_coding-intron (ENSMUSG00000028693.15, intron 5 of 15) -6536 ENSMUSG00000028693.15 ENSMUSG00000028693 ENSMUST00000148436 Nasp protein_coding Interval_66727 chr16 36673995 36675956 + 0 NA Intergenic Intergenic -19058 ENSMUSG00000022900.14 ENSMUSG00000022900 ENSMUST00000128084 Ildr1 protein_coding Interval_18099 chr10 82394915 82395560 + 0 NA intron (ENSMUSG00000073427.4, intron 4 of 4) protein_coding-intron (ENSMUSG00000073427.4, intron 4 of 7) -35467 ENSMUSG00000112163.1 ENSMUSG00000112163 ENSMUST00000219737 Gm8188 processed_pseudogene Interval_29372 chr11 83495064 83496272 + 0 NA intron (ENSMUSG00000020680.15, intron 1 of 10) protein_coding-intron (ENSMUSG00000020680.15, intron 7 of 15) 22557 ENSMUSG00000020680.15 ENSMUSG00000020680 ENSMUST00000133170 Taf15 protein_coding Interval_132597 chr5 146641766 146641973 + 0 NA Intergenic Intergenic -41767 ENSMUSG00000105907.1 ENSMUSG00000105907 ENSMUST00000200363 Gm34333 lincRNA Interval_10348 chr1 169834133 169835027 + 0 NA Intergenic Intergenic -18968 ENSMUSG00000103110.1 ENSMUSG00000103110 ENSMUST00000193654 Gm37586 unprocessed_pseudogene Interval_30590 chr11 95286679 95286966 + 0 NA intron (ENSMUSG00000038909.16, intron 2 of 3) protein_coding-intron (ENSMUSG00000038909.16, intron 6 of 13) 22691 ENSMUSG00000038909.16 ENSMUSG00000038909 ENSMUST00000143171 Kat7 protein_coding Interval_98959 chr2 156334042 156334942 + 0 NA exon (ENSMUSG00000085546.1, exon 3 of 3) antisense-exon (ENSMUSG00000085546.1, exon 3 of 3) 631 ENSMUSG00000038085.13 ENSMUSG00000038085 ENSMUST00000154227 Cnbd2 protein_coding Interval_140188 chr6 115088546 115088906 + 0 NA Intergenic Intergenic -10828 ENSMUSG00000089134.1 ENSMUSG00000089134 ENSMUST00000158509 Gm24767 miRNA Interval_8145 chr1 136045883 136046199 + 0 NA Intergenic Intergenic -4763 ENSMUSG00000097918.1 ENSMUSG00000097918 ENSMUST00000180436 Ascl5 protein_coding Interval_2436 chr1 39340467 39340984 + 0 NA promoter-TSS (ENSMUSG00000026077.15) protein_coding-promoter-TSS (ENSMUSG00000026077.15) 25826 ENSMUSG00000092563.1 ENSMUSG00000092563 ENSMUST00000173076 Gm3617 processed_pseudogene Interval_170757 chr9 110559276 110559560 + 0 NA intron (ENSMUSG00000044791.16, intron 3 of 18) protein_coding-intron (ENSMUSG00000044791.16, intron 5 of 20) -14204 ENSMUSG00000044791.16 ENSMUSG00000044791 ENSMUST00000197260 Setd2 protein_coding Interval_9092 chr1 153539507 153539965 + 0 NA intron (ENSMUSG00000042684.8, intron 2 of 11) protein_coding-intron (ENSMUSG00000042684.8, intron 2 of 11) 9975 ENSMUSG00000042684.8 ENSMUSG00000042684 ENSMUST00000187747 Npl protein_coding Interval_70548 chr17 11902790 11903329 + 0 NA intron (ENSMUSG00000023826.16, intron 8 of 10) protein_coding-intron (ENSMUSG00000023826.16, intron 9 of 11) -170714 ENSMUSG00000104466.1 ENSMUSG00000104466 ENSMUST00000194203 Gm10513 TEC Interval_55936 chr14 102969075 102969574 + 0 NA Intergenic Intergenic 13308 ENSMUSG00000092901.1 ENSMUSG00000092901 ENSMUST00000175160 Mir5130 miRNA Interval_124576 chr5 51552331 51552864 + 0 NA intron (ENSMUSG00000029167.13, intron 1 of 12) protein_coding-intron (ENSMUSG00000029167.13, intron 1 of 12) 1294 ENSMUSG00000029167.13 ENSMUSG00000029167 ENSMUST00000127135 Ppargc1a protein_coding Interval_126679 chr5 92002862 92003435 + 0 NA Intergenic Intergenic 15673 ENSMUSG00000096035.2 ENSMUSG00000096035 ENSMUST00000178614 Odaph protein_coding Interval_103147 chr3 35932075 35933646 + 0 NA promoter-TSS (ENSMUSG00000085655.5) antisense-promoter-TSS (ENSMUSG00000085655.5) -185 ENSMUSG00000085655.5 ENSMUSG00000085655 ENSMUST00000144542 Gm15952 antisense Interval_149061 chr7 92781306 92781549 + 0 NA intron (ENSMUSG00000030643.14, intron 1 of 3) protein_coding-intron (ENSMUSG00000030643.14, intron 1 of 4) 2922 ENSMUSG00000109257.1 ENSMUSG00000109257 ENSMUST00000207434 Gm45200 TEC Interval_171817 chr9 121429794 121430337 + 0 NA intron (ENSMUSG00000032536.12, intron 1 of 12) protein_coding-intron (ENSMUSG00000032536.12, intron 2 of 15) 64445 ENSMUSG00000032532.7 ENSMUSG00000032532 ENSMUST00000217581 Cck protein_coding Interval_102265 chr3 20119199 20120334 + 0 NA Intergenic Intergenic 11290 ENSMUSG00000002428.12 ENSMUSG00000002428 ENSMUST00000155635 Hltf protein_coding Interval_3766 chr1 62950296 62950860 + 0 NA Intergenic Intergenic -75164 ENSMUSG00000104991.1 ENSMUSG00000104991 ENSMUST00000199516 Gm44468 miRNA Interval_67113 chr16 43363925 43364163 + 0 NA promoter-TSS (ENSMUSG00000055370.3) antisense-promoter-TSS (ENSMUSG00000055370.3) -378 ENSMUSG00000055370.3 ENSMUSG00000055370 ENSMUST00000147504 Gm9968 antisense Interval_84351 chr19 10294368 10295352 + 0 NA intron (ENSMUSG00000035735.10, intron 1 of 19) protein_coding-intron (ENSMUSG00000035735.10, intron 1 of 19) 3934 ENSMUSG00000118330.1 ENSMUSG00000118330 ENSMUST00000237496 Gm30042 antisense Interval_33185 chr11 115073192 115074141 + 0 NA Intergenic Intergenic -11489 ENSMUSG00000048498.7 ENSMUSG00000048498 ENSMUST00000062787 Cd300e protein_coding Interval_93680 chr2 75785953 75786524 + 0 NA Intergenic Intergenic 9050 ENSMUSG00000086813.1 ENSMUSG00000086813 ENSMUST00000135682 Gm13657 processed_transcript Interval_89489 chr2 20991171 20992594 + 0 NA Intergenic Intergenic 22828 ENSMUSG00000075514.4 ENSMUSG00000075514 ENSMUST00000126967 Gm13375 antisense Interval_141368 chr6 127732317 127732973 + 0 NA exon (ENSMUSG00000030350.8, exon 2 of 10) protein_coding-exon (ENSMUSG00000030350.8, exon 2 of 10) -31103 ENSMUSG00000106833.1 ENSMUSG00000106833 ENSMUST00000200687 Gm42739 processed_pseudogene Interval_135697 chr6 43609182 43609806 + 0 NA intron (ENSMUSG00000029735.17, intron 3 of 3) protein_coding-intron (ENSMUSG00000029735.17, intron 3 of 8) 16472 ENSMUSG00000029735.17 ENSMUSG00000029735 ENSMUST00000114643 Tpk1 protein_coding Interval_47503 chr13 85881829 85882123 + 0 NA Intergenic Intergenic -9766 ENSMUSG00000114900.1 ENSMUSG00000114900 ENSMUST00000224403 Gm46396 processed_pseudogene Interval_44751 chr13 48236554 48238197 + 0 NA promoter-TSS (ENSMUSG00000114457.1) lincRNA-promoter-TSS (ENSMUSG00000114457.1) -124 ENSMUSG00000114457.1 ENSMUSG00000114457 ENSMUST00000225626 Gm36346 lincRNA Interval_42022 chr13 6602813 6604418 + 0 NA promoter-TSS (ENSMUSG00000021196.14) protein_coding-promoter-TSS (ENSMUSG00000021196.14) -5736 ENSMUSG00000021196.14 ENSMUSG00000021196 ENSMUST00000136585 Pfkp protein_coding Interval_12203 chr1 190819533 190819815 + 0 NA intron (ENSMUSG00000089872.10, intron 1 of 3) protein_coding-intron (ENSMUSG00000089872.10, intron 8 of 14) 80043 ENSMUSG00000089872.10 ENSMUSG00000089872 ENSMUST00000159066 Rps6kc1 protein_coding Interval_46040 chr13 60499666 60499917 + 0 NA Intergenic Intergenic -12492 ENSMUSG00000114452.1 ENSMUSG00000114452 ENSMUST00000225622 A530001N23Rik lincRNA Interval_76068 chr17 74681800 74682011 + 0 NA TTS (ENSMUSG00000024073.16) protein_coding-TTS (ENSMUSG00000024073.16) 46183 ENSMUSG00000024073.16 ENSMUSG00000024073 ENSMUST00000182157 Birc6 protein_coding Interval_146440 chr7 45916379 45917889 + 0 NA TTS (ENSMUSG00000040212.12) protein_coding-TTS (ENSMUSG00000040212.12) 1136 ENSMUSG00000002781.19 ENSMUSG00000002781 ENSMUST00000211280 Tmem143 protein_coding Interval_143103 chr6 149361522 149362414 + 0 NA exon (ENSMUSG00000081126.1, exon 1 of 1) processed_pseudogene-exon (ENSMUSG00000081126.1, exon 1 of 1) 282 ENSMUSG00000081126.1 ENSMUSG00000081126 ENSMUST00000120260 Gm15784 processed_pseudogene Interval_170735 chr9 110407437 110408781 + 0 NA exon (ENSMUSG00000036057.11, exon 1 of 25) protein_coding-exon (ENSMUSG00000036057.11, exon 1 of 25) -11638 ENSMUSG00000032484.8 ENSMUSG00000032484 ENSMUST00000035061 Ngp protein_coding Interval_152624 chr7 135479344 135480250 + 0 NA Intergenic Intergenic -6232 ENSMUSG00000109598.1 ENSMUSG00000109598 ENSMUST00000209224 Gm36356 lincRNA Interval_174810 chrX 167226626 167226951 + 0 NA Intergenic Intergenic -17639 ENSMUSG00000049775.16 ENSMUSG00000049775 ENSMUST00000112175 Tmsb4x protein_coding Interval_112630 chr4 43696612 43696782 + 0 NA exon (ENSMUSG00000050215.6, exon 2 of 2) protein_coding-exon (ENSMUSG00000050215.6, exon 2 of 2) 4011 ENSMUSG00000088947.1 ENSMUSG00000088947 ENSMUST00000158322 Gm23257 rRNA Interval_31996 chr11 104347207 104347613 + 0 NA intron (ENSMUSG00000018412.16, intron 7 of 13) protein_coding-intron (ENSMUSG00000018412.16, intron 8 of 14) 77890 ENSMUSG00000106014.1 ENSMUSG00000106014 ENSMUST00000195891 Gm47315 miRNA Interval_171439 chr9 118363211 118363455 + 0 NA Intergenic Intergenic 39969 ENSMUSG00000103968.1 ENSMUSG00000103968 ENSMUST00000193035 2610509F24Rik TEC Interval_87873 chr19 56747532 56747772 + 0 NA promoter-TSS (ENSMUSG00000117696.1) lincRNA-promoter-TSS (ENSMUSG00000117696.1) -888 ENSMUSG00000117696.1 ENSMUSG00000117696 ENSMUST00000237116 Gm50100 lincRNA Interval_40412 chr12 104708375 104708889 + 0 NA intron (ENSMUSG00000041415.10, intron 8 of 20) protein_coding-intron (ENSMUSG00000041415.10, intron 14 of 26) 13420 ENSMUSG00000041415.10 ENSMUSG00000041415 ENSMUST00000222002 Dicer1 protein_coding Interval_143878 chr7 16891170 16892301 + 0 NA promoter-TSS (ENSMUSG00000063594.5) protein_coding-promoter-TSS (ENSMUSG00000063594.5) -668 ENSMUSG00000108671.1 ENSMUSG00000108671 ENSMUST00000205314 2700080J24Rik TEC Interval_62395 chr15 91753062 91754216 + 0 NA intron (ENSMUSG00000036273.15, intron 8 of 18) protein_coding-intron (ENSMUSG00000036273.15, intron 31 of 50) -60989 ENSMUSG00000036273.15 ENSMUSG00000036273 ENSMUST00000172797 Lrrk2 protein_coding Interval_54473 chr14 70074465 70080562 + 0 NA promoter-TSS (ENSMUSG00000033730.4) protein_coding-promoter-TSS (ENSMUSG00000033730.4) 199 ENSMUSG00000033730.4 ENSMUSG00000033730 ENSMUST00000223747 Egr3 protein_coding Interval_124905 chr5 59956160 59956414 + 0 NA promoter-TSS (ENSMUSG00000104563.1) TEC-promoter-TSS (ENSMUSG00000104563.1) -147 ENSMUSG00000104563.1 ENSMUSG00000104563 ENSMUST00000200022 Gm43041 TEC Interval_148901 chr7 89938404 89938783 + 0 NA TTS (ENSMUSG00000062797.14) protein_coding-TTS (ENSMUSG00000062797.14) 2606 ENSMUSG00000062797.14 ENSMUSG00000062797 ENSMUST00000207695 Hikeshi protein_coding Interval_27188 chr11 63930291 63931145 + 0 NA Intergenic Intergenic -8428 ENSMUSG00000070407.5 ENSMUSG00000070407 ENSMUST00000094103 Hs3st3b1 protein_coding Interval_93158 chr2 70716370 70716632 + 0 NA exon (ENSMUSG00000041997.16, exon 2 of 2) protein_coding-exon (ENSMUSG00000041997.16, exon 2 of 2) 1403 ENSMUSG00000041997.16 ENSMUSG00000041997 ENSMUST00000124629 Tlk1 protein_coding Interval_22923 chr11 17449543 17449764 + 0 NA Intergenic Intergenic -98633 ENSMUSG00000087833.1 ENSMUSG00000087833 ENSMUST00000157208 Gm23959 misc_RNA Interval_61691 chr15 83427671 83427993 + 0 NA intron (ENSMUSG00000016664.16, intron 1 of 11) protein_coding-intron (ENSMUSG00000016664.16, intron 1 of 11) -21769 ENSMUSG00000049414.7 ENSMUSG00000049414 ENSMUST00000079706 Gm5417 processed_pseudogene Interval_91829 chr2 49951220 49952757 + 0 NA Intergenic Intergenic -45108 ENSMUSG00000088825.1 ENSMUSG00000088825 ENSMUST00000158200 Gm25223 misc_RNA Interval_47609 chr13 90007221 90007410 + 0 NA intron (ENSMUSG00000021615.13, intron 3 of 8) protein_coding-intron (ENSMUSG00000021615.13, intron 3 of 7) -79772 ENSMUSG00000089070.1 ENSMUSG00000089070 ENSMUST00000158445 Gm24498 snRNA Interval_99361 chr2 160222158 160222378 + 0 NA Intergenic Intergenic 111894 ENSMUSG00000074623.4 ENSMUSG00000074623 ENSMUST00000099127 Gm826 protein_coding Interval_45528 chr13 55672086 55672910 + 0 NA intron (ENSMUSG00000021500.17, intron 2 of 3) protein_coding-intron (ENSMUSG00000021500.17, intron 17 of 21) 2734 ENSMUSG00000021500.17 ENSMUSG00000021500 ENSMUST00000231097 Ddx46 protein_coding Interval_88834 chr2 11528092 11528330 + 0 NA intron (ENSMUSG00000102329.1, intron 1 of 2) antisense-intron (ENSMUSG00000102329.1, intron 1 of 2) 6483 ENSMUSG00000102376.1 ENSMUSG00000102376 ENSMUST00000195494 Gm37975 TEC Interval_63026 chr15 98707831 98708658 + 0 NA promoter-TSS (ENSMUSG00000003354.6) protein_coding-promoter-TSS (ENSMUSG00000003354.6) 13 ENSMUSG00000003354.6 ENSMUSG00000003354 ENSMUST00000229471 Ccdc65 protein_coding Interval_144536 chr7 25763009 25763685 + 0 NA TTS (ENSMUSG00000002602.16) protein_coding-TTS (ENSMUSG00000002602.16) -8590 ENSMUSG00000040725.13 ENSMUSG00000040725 ENSMUST00000206041 Hnrnpul1 protein_coding Interval_122691 chr5 24684458 24686319 + 0 NA promoter-TSS (ENSMUSG00000028954.11) protein_coding-promoter-TSS (ENSMUSG00000028954.11) -599 ENSMUSG00000028954.11 ENSMUSG00000028954 ENSMUST00000200337 Nub1 protein_coding Interval_102605 chr3 28251819 28252956 + 0 NA Intergenic Intergenic 6864 ENSMUSG00000103729.1 ENSMUSG00000103729 ENSMUST00000192290 Gm37098 processed_pseudogene Interval_88761 chr2 10363879 10364303 + 0 NA intron (ENSMUSG00000086748.1, intron 1 of 3) processed_transcript-intron (ENSMUSG00000086748.1, intron 1 of 3) -8357 ENSMUSG00000061186.15 ENSMUSG00000061186 ENSMUST00000041105 Sfmbt2 protein_coding Interval_56387 chr14 118341662 118342720 + 0 NA Intergenic Intergenic 19214 ENSMUSG00000115258.1 ENSMUSG00000115258 ENSMUST00000227592 Gm32093 lincRNA Interval_146184 chr7 44576632 44577628 + 0 NA intron (ENSMUSG00000002204.9, intron 1 of 4) protein_coding-intron (ENSMUSG00000002204.9, intron 1 of 8) -5224 ENSMUSG00000002204.9 ENSMUSG00000002204 ENSMUST00000207302 Napsa protein_coding Interval_143938 chr7 18235149 18235446 + 0 NA Intergenic Intergenic 5520 ENSMUSG00000108798.1 ENSMUSG00000108798 ENSMUST00000206656 Gm9521 processed_pseudogene Interval_88660 chr2 9093848 9094078 + 0 NA Intergenic Intergenic -51479 ENSMUSG00000082953.3 ENSMUSG00000082953 ENSMUST00000120466 Gm13217 unprocessed_pseudogene Interval_74728 chr17 56185415 56185876 + 0 NA Intergenic Intergenic -1981 ENSMUSG00000019579.13 ENSMUSG00000019579 ENSMUST00000151093 Mydgf protein_coding Interval_81827 chr18 65037366 65037714 + 0 NA intron (ENSMUSG00000024589.18, intron 1 of 29) protein_coding-intron (ENSMUSG00000024589.18, intron 1 of 29) -36365 ENSMUSG00000117895.1 ENSMUSG00000117895 ENSMUST00000237218 Gm50368 antisense Interval_123558 chr5 33487995 33489612 + 0 NA Intergenic Intergenic -51339 ENSMUSG00000107248.1 ENSMUSG00000107248 ENSMUST00000200726 Gm43851 lincRNA Interval_29837 chr11 87168846 87169070 + 0 NA intron (ENSMUSG00000018548.15, intron 12 of 23) protein_coding-intron (ENSMUSG00000018548.15, intron 12 of 23) -21116 ENSMUSG00000018548.15 ENSMUSG00000018548 ENSMUST00000154138 Trim37 protein_coding Interval_25663 chr11 50547239 50547876 + 0 NA Intergenic Intergenic -36380 ENSMUSG00000089366.1 ENSMUSG00000089366 ENSMUST00000158741 Gm23824 misc_RNA Interval_25837 chr11 52060932 52061327 + 0 NA intron (ENSMUSG00000020389.19, intron 5 of 5) protein_coding-intron (ENSMUSG00000020389.19, intron 13 of 13) -21658 ENSMUSG00000084800.1 ENSMUSG00000084800 ENSMUST00000133940 Gm12205 antisense Interval_46468 chr13 66401637 66402418 + 0 NA promoter-TSS (ENSMUSG00000094499.3) transcribed_unprocessed_pseudogene-promoter-TSS (ENSMUSG00000094499.3) -154 ENSMUSG00000094499.3 ENSMUSG00000094499 ENSMUST00000099416 Vmn2r-ps104 transcribed_unprocessed_pseudogene Interval_97966 chr2 146226583 146226938 + 0 NA Intergenic Intergenic 4839 ENSMUSG00000068154.5 ENSMUSG00000068154 ENSMUST00000089257 Insm1 protein_coding Interval_135037 chr6 34889045 34889370 + 0 NA intron (ENSMUSG00000058486.11, intron 10 of 13) protein_coding-intron (ENSMUSG00000058486.11, intron 10 of 14) -12227 ENSMUSG00000046806.13 ENSMUSG00000046806 ENSMUST00000140458 Cyren protein_coding Interval_12682 chr10 4305849 4306045 + 0 NA intron (ENSMUSG00000038587.10, intron 1 of 3) protein_coding-intron (ENSMUSG00000038587.10, intron 1 of 3) -28598 ENSMUSG00000038587.10 ENSMUSG00000038587 ENSMUST00000215696 Akap12 protein_coding Interval_98686 chr2 154304020 154304270 + 0 NA Intergenic Intergenic -3082 ENSMUSG00000067996.5 ENSMUSG00000067996 ENSMUST00000088921 Bpifb9b protein_coding Interval_13050 chr10 10384348 10384576 + 0 NA intron (ENSMUSG00000050994.20, intron 24 of 34) protein_coding-intron (ENSMUSG00000050994.20, intron 14 of 24) 41347 ENSMUSG00000083257.1 ENSMUSG00000083257 ENSMUST00000118589 Gm15568 processed_pseudogene Interval_132770 chr5 147761079 147762580 + 0 NA Intergenic Intergenic 16313 ENSMUSG00000106845.1 ENSMUSG00000106845 ENSMUST00000202338 Gm43156 lincRNA Interval_34574 chr12 5268172 5268783 + 0 NA intron (ENSMUSG00000020627.10, intron 1 of 11) protein_coding-intron (ENSMUSG00000020627.10, intron 2 of 13) 22904 ENSMUSG00000020627.10 ENSMUSG00000020627 ENSMUST00000218384 Klhl29 protein_coding Interval_138064 chr6 84930838 84931284 + 0 NA intron (ENSMUSG00000033769.16, intron 5 of 13) protein_coding-intron (ENSMUSG00000033769.16, intron 6 of 16) 9938 ENSMUSG00000108012.1 ENSMUSG00000108012 ENSMUST00000204154 Gm44012 antisense Interval_168907 chr9 88510901 88511757 + 0 NA intron (ENSMUSG00000097195.10, intron 4 of 5) processed_transcript-intron (ENSMUSG00000097195.10, intron 4 of 5) 10271 ENSMUSG00000094263.1 ENSMUSG00000094263 ENSMUST00000178154 Snord50a snoRNA Interval_121695 chr5 5373071 5373487 + 0 NA intron (ENSMUSG00000028926.15, intron 2 of 2) protein_coding-intron (ENSMUSG00000028926.15, intron 2 of 14) 6914 ENSMUSG00000028926.15 ENSMUSG00000028926 ENSMUST00000200637 Cdk14 protein_coding Interval_158621 chr8 84815253 84816378 + 0 NA exon (ENSMUSG00000053226.7, exon 2 of 2) protein_coding-exon (ENSMUSG00000053226.7, exon 2 of 2) -15707 ENSMUSG00000033751.5 ENSMUSG00000033751 ENSMUST00000036734 Gadd45gip1 protein_coding Interval_157002 chr8 64284230 64284564 + 0 NA Intergenic Intergenic -78126 ENSMUSG00000053626.5 ENSMUSG00000053626 ENSMUST00000210256 Tll1 protein_coding Interval_124496 chr5 49180951 49181154 + 0 NA intron (ENSMUSG00000029088.16, intron 1 of 8) protein_coding-intron (ENSMUSG00000029088.16, intron 1 of 8) 36636 ENSMUSG00000105828.1 ENSMUSG00000105828 ENSMUST00000196101 Gm43048 TEC Interval_23459 chr11 22752756 22752969 + 0 NA Intergenic Intergenic 7163 ENSMUSG00000084081.3 ENSMUSG00000084081 ENSMUST00000117244 Gm12057 processed_pseudogene Interval_149331 chr7 97490568 97491766 + 0 NA intron (ENSMUSG00000025133.9, intron 4 of 11) protein_coding-intron (ENSMUSG00000025133.9, intron 4 of 22) -30641 ENSMUSG00000065360.1 ENSMUSG00000065360 ENSMUST00000083426 Gm24412 snoRNA Interval_164397 chr9 36739354 36739548 + 0 NA intron (ENSMUSG00000032116.18, intron 15 of 17) protein_coding-intron (ENSMUSG00000032116.18, intron 15 of 17) -16706 ENSMUSG00000032113.16 ENSMUSG00000032113 ENSMUST00000172742 Chek1 protein_coding Interval_48623 chr13 100707177 100707444 + 0 NA TTS (ENSMUSG00000069089.8) protein_coding-TTS (ENSMUSG00000069089.8) 23590 ENSMUSG00000069089.8 ENSMUSG00000069089 ENSMUST00000225578 Cdk7 protein_coding Interval_6251 chr1 104737720 104738884 + 0 NA Intergenic Intergenic -30227 ENSMUSG00000050840.8 ENSMUSG00000050840 ENSMUST00000062528 Cdh20 protein_coding Interval_46648 chr13 68049506 68050369 + 0 NA Intergenic Intergenic 10671 ENSMUSG00000113365.1 ENSMUSG00000113365 ENSMUST00000222859 Gm48424 unprocessed_pseudogene Interval_153471 chr7 145029298 145029537 + 0 NA Intergenic Intergenic -89492 ENSMUSG00000070348.5 ENSMUSG00000070348 ENSMUST00000135985 Ccnd1 protein_coding Interval_167841 chr9 73014422 73014894 + 0 NA promoter-TSS (ENSMUSG00000034563.16) protein_coding-promoter-TSS (ENSMUSG00000034563.16) 9457 ENSMUSG00000098589.2 ENSMUSG00000098589 ENSMUST00000184712 Gm27353 miRNA Interval_30029 chr11 88792273 88793245 + 0 NA Intergenic Intergenic 48781 ENSMUSG00000018428.15 ENSMUSG00000018428 ENSMUST00000153787 Akap1 protein_coding Interval_29770 chr11 86691031 86691482 + 0 NA exon (ENSMUSG00000072582.9, exon 3 of 3) protein_coding-exon (ENSMUSG00000072582.9, exon 3 of 3) 7271 ENSMUSG00000072582.9 ENSMUSG00000072582 ENSMUST00000108021 Ptrh2 protein_coding Interval_71697 chr17 25496375 25497913 + 0 NA promoter-TSS (ENSMUSG00000050824.12) protein_coding-promoter-TSS (ENSMUSG00000050824.12) 71 ENSMUSG00000050824.12 ENSMUSG00000050824 ENSMUST00000165183 Sstr5 protein_coding Interval_25806 chr11 51830978 51831356 + 0 NA intron (ENSMUSG00000020387.15, intron 6 of 12) protein_coding-intron (ENSMUSG00000020387.15, intron 5 of 11) 25958 ENSMUSG00000020387.15 ENSMUSG00000020387 ENSMUST00000151277 Jade2 protein_coding Interval_123228 chr5 30767530 30767867 + 0 NA intron (ENSMUSG00000029168.14, intron 2 of 12) protein_coding-intron (ENSMUSG00000029168.14, intron 2 of 12) 8666 ENSMUSG00000106173.1 ENSMUSG00000106173 ENSMUST00000197835 Gm42764 sense_intronic Interval_82095 chr18 67690327 67691187 + 0 NA promoter-TSS (ENSMUSG00000024539.17) protein_coding-promoter-TSS (ENSMUSG00000024539.17) -533 ENSMUSG00000024539.17 ENSMUSG00000024539 ENSMUST00000128169 Ptpn2 protein_coding Interval_135567 chr6 40485339 40486288 + 0 NA Intergenic Intergenic -5420 ENSMUSG00000052850.5 ENSMUSG00000052850 ENSMUST00000064932 Tas2r137 protein_coding Interval_111027 chr4 11300389 11301339 + 0 NA intron (ENSMUSG00000045205.16, intron 6 of 12) protein_coding-intron (ENSMUSG00000045205.16, intron 6 of 18) 21236 ENSMUSG00000045205.16 ENSMUSG00000045205 ENSMUST00000148524 Dpy19l4 protein_coding Interval_163489 chr9 21691141 21691437 + 0 NA intron (ENSMUSG00000032187.16, intron 29 of 33) protein_coding-intron (ENSMUSG00000032187.16, intron 29 of 33) 13376 ENSMUSG00000099192.1 ENSMUSG00000099192 ENSMUST00000184017 Gm27373 misc_RNA Interval_47659 chr13 90907022 90907671 + 0 NA Intergenic Intergenic -7533 ENSMUSG00000078958.9 ENSMUSG00000078958 ENSMUST00000182932 Atp6ap1l protein_coding Interval_127474 chr5 104284554 104285103 + 0 NA Intergenic Intergenic -12360 ENSMUSG00000094432.1 ENSMUSG00000094432 ENSMUST00000177797 Gm23616 miRNA Interval_47768 chr13 92490848 92492178 + 0 NA intron (ENSMUSG00000021706.14, intron 13 of 13) protein_coding-intron (ENSMUSG00000021706.14, intron 17 of 17) -7498 ENSMUSG00000034334.8 ENSMUSG00000034334 ENSMUST00000040106 Fam151b protein_coding Interval_172573 chrX 36884670 36885153 + 0 NA TTS (ENSMUSG00000016308.12) protein_coding-TTS (ENSMUSG00000016308.12) 10580 ENSMUSG00000016308.12 ENSMUSG00000016308 ENSMUST00000201050 Ube2a protein_coding Interval_107042 chr3 103115798 103116710 + 0 NA intron (ENSMUSG00000007379.15, intron 1 of 17) protein_coding-intron (ENSMUSG00000007379.15, intron 1 of 11) 19508 ENSMUSG00000105731.1 ENSMUSG00000105731 ENSMUST00000198198 Gm43063 sense_intronic Interval_25484 chr11 48874670 48875158 + 0 NA Intergenic Intergenic -3231 ENSMUSG00000046879.7 ENSMUSG00000046879 ENSMUST00000097271 Irgm1 protein_coding Interval_156079 chr8 43625171 43625384 + 0 NA exon (ENSMUSG00000050190.4, exon 1 of 1) protein_coding-exon (ENSMUSG00000050190.4, exon 1 of 1) 1999 ENSMUSG00000050190.4 ENSMUSG00000050190 ENSMUST00000056023 Adam34l protein_coding Interval_17165 chr10 73232680 73232934 + 0 NA intron (ENSMUSG00000085456.2, intron 2 of 2) protein_coding-intron (ENSMUSG00000052613.16, intron 1 of 13) 31112 ENSMUSG00000091825.1 ENSMUSG00000091825 ENSMUST00000171003 Gm5778 processed_pseudogene Interval_59912 chr15 61821085 61821346 + 0 NA Intergenic Intergenic -5032 ENSMUSG00000116017.1 ENSMUSG00000116017 ENSMUST00000229370 Gm18154 processed_pseudogene Interval_86618 chr19 42075487 42076581 + 0 NA exon (ENSMUSG00000049670.9, exon 5 of 5) protein_coding-exon (ENSMUSG00000049670.9, exon 5 of 5) 3099 ENSMUSG00000049670.9 ENSMUSG00000049670 ENSMUST00000051772 Morn4 protein_coding Interval_159103 chr8 90670452 90671437 + 0 NA intron (ENSMUSG00000109672.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000109672.1, intron 1 of 1) 4014 ENSMUSG00000109672.1 ENSMUSG00000109672 ENSMUST00000211205 Gm45639 lincRNA Interval_106389 chr3 95860563 95862331 + 0 NA TTS (ENSMUSG00000097189.1) lincRNA-TTS (ENSMUSG00000097189.1) 5481 ENSMUSG00000097189.1 ENSMUSG00000097189 ENSMUST00000180383 Gm26594 lincRNA Interval_155932 chr8 41105435 41105745 + 0 NA intron (ENSMUSG00000045636.16, intron 1 of 1) protein_coding-intron (ENSMUSG00000045636.16, intron 1 of 13) 52480 ENSMUSG00000085672.1 ENSMUSG00000085672 ENSMUST00000125903 Gm16193 antisense Interval_138722 chr6 91440558 91441556 + 0 NA promoter-TSS (ENSMUSG00000097693.3) transcribed_processed_pseudogene-promoter-TSS (ENSMUSG00000097693.3) 70 ENSMUSG00000100680.1 ENSMUSG00000100680 ENSMUST00000186472 1810044D09Rik lincRNA Interval_10671 chr1 172592095 172593633 + 0 NA Intergenic Intergenic -2415 ENSMUSG00000053318.7 ENSMUSG00000053318 ENSMUST00000193843 Slamf8 protein_coding Interval_100619 chr2 170510635 170512257 + 0 NA promoter-TSS (ENSMUSG00000052033.13) protein_coding-promoter-TSS (ENSMUSG00000052033.13) -114 ENSMUSG00000052033.13 ENSMUSG00000052033 ENSMUST00000139328 Pfdn4 protein_coding Interval_165708 chr9 51255611 51255868 + 0 NA Intergenic Intergenic 22596 ENSMUSG00000032053.8 ENSMUSG00000032053 ENSMUST00000214322 Pou2af1 protein_coding Interval_87228 chr19 47050051 47051060 + 0 NA exon (ENSMUSG00000025050.8, exon 1 of 10) protein_coding-exon (ENSMUSG00000025050.8, exon 1 of 10) 335 ENSMUSG00000025050.8 ENSMUSG00000025050 ENSMUST00000236339 Pcgf6 protein_coding Interval_34008 chr11 119970297 119971159 + 0 NA intron (ENSMUSG00000025372.16, intron 3 of 4) protein_coding-intron (ENSMUSG00000025372.16, intron 3 of 13) 27612 ENSMUSG00000025372.16 ENSMUSG00000025372 ENSMUST00000131580 Baiap2 protein_coding Interval_83338 chr18 84370599 84371940 + 0 NA intron (ENSMUSG00000048410.17, intron 4 of 8) protein_coding-intron (ENSMUSG00000048410.17, intron 2 of 2) 4877 ENSMUSG00000102951.1 ENSMUSG00000102951 ENSMUST00000193817 Gm37216 TEC Interval_44513 chr13 45562021 45562257 + 0 NA intron (ENSMUSG00000046876.16, intron 6 of 6) protein_coding-intron (ENSMUSG00000046876.16, intron 7 of 7) 15986 ENSMUSG00000000253.13 ENSMUSG00000000253 ENSMUST00000222227 Gmpr protein_coding Interval_74270 chr17 47812376 47812590 + 0 NA Intergenic Intergenic 20789 ENSMUSG00000032717.14 ENSMUSG00000032717 ENSMUST00000129360 Mdfi protein_coding Interval_65156 chr16 20233353 20233656 + 0 NA TTS (ENSMUSG00000041215.16) protein_coding-TTS (ENSMUSG00000041215.16) -7523 ENSMUSG00000116913.1 ENSMUSG00000116913 ENSMUST00000231237 Gm49566 antisense Interval_51842 chr14 32684368 32684658 + 0 NA intron (ENSMUSG00000071540.4, intron 2 of 3) protein_coding-intron (ENSMUSG00000071540.4, intron 1 of 3) 780 ENSMUSG00000071540.4 ENSMUSG00000071540 ENSMUST00000226958 3425401B19Rik protein_coding Interval_108174 chr3 122152394 122152942 + 0 NA promoter-TSS (ENSMUSG00000105351.1) processed_pseudogene-promoter-TSS (ENSMUSG00000105351.1) -49 ENSMUSG00000105351.1 ENSMUSG00000105351 ENSMUST00000198223 Gm43157 processed_pseudogene Interval_155234 chr8 28487383 28488347 + 0 NA Intergenic Intergenic -32811 ENSMUSG00000110322.1 ENSMUSG00000110322 ENSMUST00000211297 Gm8110 lincRNA Interval_77776 chr18 3428573 3428895 + 0 NA intron (ENSMUSG00000024231.15, intron 16 of 20) protein_coding-intron (ENSMUSG00000024231.15, intron 16 of 19) -18080 ENSMUSG00000117370.1 ENSMUSG00000117370 ENSMUST00000235096 Gm6235 processed_pseudogene Interval_11979 chr1 188180575 188180810 + 0 NA intron (ENSMUSG00000026610.13, intron 6 of 7) protein_coding-intron (ENSMUSG00000026610.13, intron 5 of 6) 19985 ENSMUSG00000103732.1 ENSMUSG00000103732 ENSMUST00000194286 Gm38315 TEC Interval_120678 chr4 150051585 150052237 + 0 NA intron (ENSMUSG00000086665.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000086665.1, intron 1 of 1) 2898 ENSMUSG00000086665.1 ENSMUSG00000086665 ENSMUST00000134236 Gm13067 lincRNA Interval_53729 chr14 61267001 61268466 + 0 NA Intergenic Intergenic 17055 ENSMUSG00000114920.1 ENSMUSG00000114920 ENSMUST00000225947 Gm19097 processed_pseudogene Interval_33265 chr11 115552752 115553351 + 0 NA Intergenic Intergenic -16775 ENSMUSG00000020738.16 ENSMUSG00000020738 ENSMUST00000050672 Sumo2 protein_coding Interval_97960 chr2 146189830 146190019 + 0 NA intron (ENSMUSG00000037143.17, intron 9 of 10) protein_coding-intron (ENSMUSG00000037143.17, intron 25 of 26) -24689 ENSMUSG00000037143.17 ENSMUSG00000037143 ENSMUST00000167179 Cfap61 protein_coding Interval_20172 chr10 115393744 115394233 + 0 NA promoter-TSS (ENSMUSG00000112822.1) TEC-promoter-TSS (ENSMUSG00000112822.1) -762 ENSMUSG00000112822.1 ENSMUSG00000112822 ENSMUST00000218674 A130012E19Rik TEC Interval_51928 chr14 33996970 33997357 + 0 NA intron (ENSMUSG00000115726.1, intron 9 of 16) protein_coding-intron (ENSMUSG00000115726.1, intron 9 of 16) 18019 ENSMUSG00000115726.1 ENSMUSG00000115726 ENSMUST00000227523 Gm30083 protein_coding Interval_69701 chr16 95667905 95668536 + 0 NA Intergenic Intergenic -34235 ENSMUSG00000022895.16 ENSMUSG00000022895 ENSMUST00000233578 Ets2 protein_coding Interval_20633 chr10 119780996 119781321 + 0 NA intron (ENSMUSG00000034813.18, intron 1 of 3) protein_coding-intron (ENSMUSG00000034813.18, intron 1 of 22) -19459 ENSMUSG00000084764.1 ENSMUSG00000084764 ENSMUST00000153898 Grip1os2 antisense Interval_74797 chr17 56597856 56599070 + 0 NA exon (ENSMUSG00000071054.12, exon 1 of 14) protein_coding-exon (ENSMUSG00000071054.12, exon 1 of 14) -7277 ENSMUSG00000071054.12 ENSMUSG00000071054 ENSMUST00000183318 Safb protein_coding Interval_150974 chr7 117048942 117049847 + 0 NA Intergenic Intergenic -96699 ENSMUSG00000064971.1 ENSMUSG00000064971 ENSMUST00000083037 Gm26054 snRNA Interval_47310 chr13 81058956 81059280 + 0 NA intron (ENSMUSG00000097098.8, intron 1 of 1) antisense-intron (ENSMUSG00000097098.8, intron 1 of 1) -5566 ENSMUSG00000043889.6 ENSMUSG00000043889 ENSMUST00000082300 Gm8399 processed_pseudogene Interval_137548 chr6 73053930 73054356 + 0 NA intron (ENSMUSG00000052861.13, intron 60 of 75) protein_coding-intron (ENSMUSG00000052861.13, intron 61 of 76) 42100 ENSMUSG00000107546.1 ENSMUSG00000107546 ENSMUST00000204577 Gm20560 antisense Interval_106826 chr3 101135025 101135294 + 0 NA Intergenic Intergenic -47766 ENSMUSG00000105717.1 ENSMUSG00000105717 ENSMUST00000200367 Gm43465 sense_intronic Interval_75359 chr17 66108256 66108464 + 0 NA Intergenic Intergenic -6851 ENSMUSG00000024099.15 ENSMUSG00000024099 ENSMUST00000147484 Ndufv2 protein_coding Interval_65826 chr16 29578844 29579997 + 0 NA promoter-TSS (ENSMUSG00000038084.16) protein_coding-promoter-TSS (ENSMUSG00000038084.16) -7594 ENSMUSG00000038084.16 ENSMUSG00000038084 ENSMUST00000160101 Opa1 protein_coding Interval_111310 chr4 18384778 18385769 + 0 NA Intergenic Intergenic -22076 ENSMUSG00000087402.1 ENSMUSG00000087402 ENSMUST00000133363 Gm11867 processed_transcript Interval_77814 chr18 3934633 3935422 + 0 NA Intergenic Intergenic 74919 ENSMUSG00000084719.1 ENSMUSG00000084719 ENSMUST00000122770 Gm24632 misc_RNA Interval_125084 chr5 64348677 64349910 + 0 NA intron (ENSMUSG00000029174.18, intron 8 of 8) protein_coding-intron (ENSMUSG00000029174.18, intron 21 of 21) -11221 ENSMUSG00000105730.1 ENSMUSG00000105730 ENSMUST00000196357 Gm43838 lincRNA Interval_146767 chr7 50165725 50166198 + 0 NA intron (ENSMUSG00000055409.14, intron 2 of 5) protein_coding-intron (ENSMUSG00000055409.14, intron 4 of 19) 67651 ENSMUSG00000055409.14 ENSMUSG00000055409 ENSMUST00000154410 Nell1 protein_coding Interval_45190 chr13 53097602 53098240 + 0 NA Intergenic Intergenic 69003 ENSMUSG00000112952.1 ENSMUSG00000112952 ENSMUST00000222184 Gm48336 lincRNA Interval_91409 chr2 38610074 38610518 + 0 NA TTS (ENSMUSG00000026750.6) protein_coding-TTS (ENSMUSG00000026750.6) -12505 ENSMUSG00000082931.1 ENSMUSG00000082931 ENSMUST00000121784 Gm13586 processed_pseudogene Interval_132987 chr5 149111830 149113908 + 0 NA intron (ENSMUSG00000066551.12, intron 2 of 5) protein_coding-intron (ENSMUSG00000066551.12, intron 2 of 5) 10543 ENSMUSG00000097191.2 ENSMUSG00000097191 ENSMUST00000200718 Mm2pr lincRNA Interval_96032 chr2 119304683 119305910 + 0 NA Intergenic Intergenic 16509 ENSMUSG00000034216.12 ENSMUSG00000034216 ENSMUST00000151500 Vps18 protein_coding Interval_11135 chr1 179574499 179574737 + 0 NA intron (ENSMUSG00000038949.8, intron 1 of 3) protein_coding-intron (ENSMUSG00000038949.8, intron 1 of 10) 28109 ENSMUSG00000038949.8 ENSMUSG00000038949 ENSMUST00000143270 Cnst protein_coding Interval_42682 chr13 17923923 17924571 + 0 NA intron (ENSMUSG00000008859.8, intron 1 of 4) protein_coding-intron (ENSMUSG00000008859.8, intron 1 of 4) -8139 ENSMUSG00000113100.1 ENSMUSG00000113100 ENSMUST00000221683 Gm48754 antisense Interval_17240 chr10 75226702 75227672 + 0 NA intron (ENSMUSG00000033444.14, intron 2 of 17) protein_coding-intron (ENSMUSG00000033444.14, intron 2 of 17) -33780 ENSMUSG00000033444.14 ENSMUSG00000033444 ENSMUST00000218644 Specc1l protein_coding Interval_151447 chr7 122568688 122569100 + 0 NA intron (ENSMUSG00000052889.11, intron 10 of 17) protein_coding-intron (ENSMUSG00000052889.11, intron 10 of 16) -22041 ENSMUSG00000108341.1 ENSMUSG00000108341 ENSMUST00000205565 Gm44746 TEC Interval_153823 chr8 9151948 9153257 + 0 NA TTS (ENSMUSG00000109124.1) lincRNA-TTS (ENSMUSG00000109124.1) 4619 ENSMUSG00000109124.1 ENSMUSG00000109124 ENSMUST00000208794 Gm44516 lincRNA Interval_87699 chr19 55161736 55162512 + 0 NA Intergenic Intergenic -18609 ENSMUSG00000024979.13 ENSMUSG00000024979 ENSMUST00000148123 Tectb protein_coding Interval_128810 chr5 115393746 115395947 + 0 NA intron (ENSMUSG00000087292.1, intron 2 of 2) lincRNA-intron (ENSMUSG00000087292.1, intron 2 of 2) 27654 ENSMUSG00000106887.1 ENSMUSG00000106887 ENSMUST00000201293 A930005G22Rik TEC Interval_51937 chr14 34085203 34086483 + 0 NA promoter-TSS (ENSMUSG00000021950.15) protein_coding-promoter-TSS (ENSMUSG00000021950.15) -182 ENSMUSG00000021950.15 ENSMUSG00000021950 ENSMUST00000120077 Anxa8 protein_coding Interval_66118 chr16 31746148 31746862 + 0 NA TTS (ENSMUSG00000089011.1) snoRNA-TTS (ENSMUSG00000089011.1) 837 ENSMUSG00000089011.1 ENSMUSG00000089011 ENSMUST00000158386 Gm24879 snoRNA Interval_169056 chr9 91353656 91354810 + 0 NA Intergenic Intergenic -3280 ENSMUSG00000102406.1 ENSMUSG00000102406 ENSMUST00000193867 A730094K22Rik TEC Interval_59263 chr15 50320765 50320976 + 0 NA intron (ENSMUSG00000115478.1, intron 2 of 2) lincRNA-intron (ENSMUSG00000115478.1, intron 2 of 2) 33972 ENSMUSG00000115478.1 ENSMUSG00000115478 ENSMUST00000227182 Gm49198 lincRNA Interval_106877 chr3 101461880 101462702 + 0 NA exon (ENSMUSG00000042035.11, exon 11 of 11) protein_coding-exon (ENSMUSG00000042035.11, exon 11 of 11) -36638 ENSMUSG00000106137.1 ENSMUSG00000106137 ENSMUST00000196233 Gm42538 antisense Interval_16865 chr10 69345165 69345918 + 0 NA promoter-TSS (ENSMUSG00000019942.13) protein_coding-promoter-TSS (ENSMUSG00000019942.13) 5289 ENSMUSG00000019942.13 ENSMUSG00000019942 ENSMUST00000124054 Cdk1 protein_coding Interval_10682 chr1 172683501 172685007 + 0 NA TTS (ENSMUSG00000088813.1) misc_RNA-TTS (ENSMUSG00000088813.1) 587 ENSMUSG00000088813.1 ENSMUSG00000088813 ENSMUST00000158188 Gm22383 misc_RNA Interval_7059 chr1 124717761 124719053 + 0 NA intron (ENSMUSG00000036815.17, intron 1 of 2) protein_coding-intron (ENSMUSG00000036815.17, intron 1 of 2) -102811 ENSMUSG00000101006.1 ENSMUSG00000101006 ENSMUST00000189908 Gm28299 processed_pseudogene Interval_112178 chr4 35225163 35226435 + 0 NA promoter-TSS (ENSMUSG00000028300.14) protein_coding-promoter-TSS (ENSMUSG00000028300.14) -116 ENSMUSG00000084828.1 ENSMUSG00000084828 ENSMUST00000146909 Gm12367 processed_transcript Interval_104640 chr3 69034755 69035757 + 0 NA TTS (ENSMUSG00000034349.14) protein_coding-TTS (ENSMUSG00000034349.14) 9467 ENSMUSG00000034317.14 ENSMUSG00000034317 ENSMUST00000153259 Trim59 protein_coding Interval_165205 chr9 45318220 45319318 + 0 NA promoter-TSS (ENSMUSG00000037129.7) protein_coding-promoter-TSS (ENSMUSG00000037129.7) -331 ENSMUSG00000037129.7 ENSMUSG00000037129 ENSMUST00000034597 Tmprss13 protein_coding Interval_141592 chr6 130072129 130072505 + 0 NA Intergenic Intergenic -5046 ENSMUSG00000079852.4 ENSMUSG00000079852 ENSMUST00000119096 Klra4 protein_coding Interval_59873 chr15 60415382 60416466 + 0 NA Intergenic Intergenic 18627 ENSMUSG00000115159.1 ENSMUSG00000115159 ENSMUST00000226405 Gm17892 processed_pseudogene Interval_32995 chr11 113576982 113577893 + 0 NA TTS (ENSMUSG00000041654.15) protein_coding-TTS (ENSMUSG00000041654.15) -11658 ENSMUSG00000041654.15 ENSMUSG00000041654 ENSMUST00000123153 Slc39a11 protein_coding Interval_116375 chr4 110597693 110598301 + 0 NA intron (ENSMUSG00000061298.14, intron 3 of 12) protein_coding-intron (ENSMUSG00000061298.14, intron 3 of 12) -84265 ENSMUSG00000082348.1 ENSMUSG00000082348 ENSMUST00000121546 Gm12807 processed_pseudogene Interval_17362 chr10 76076783 76077263 + 0 NA intron (ENSMUSG00000020226.9, intron 8 of 14) protein_coding-intron (ENSMUSG00000020226.9, intron 8 of 14) -1594 ENSMUSG00000086798.1 ENSMUSG00000086798 ENSMUST00000124320 Gm16222 antisense Interval_106478 chr3 96597527 96598766 + 0 NA exon (ENSMUSG00000049097.9, exon 2 of 2) protein_coding-exon (ENSMUSG00000049097.9, exon 2 of 2) 1510 ENSMUSG00000049097.9 ENSMUSG00000049097 ENSMUST00000058943 Ankrd34a protein_coding Interval_140972 chr6 123340189 123340888 + 0 NA Intergenic Intergenic 32205 ENSMUSG00000091260.1 ENSMUSG00000091260 ENSMUST00000073948 Vmn2r19 protein_coding Interval_170165 chr9 105809158 105809643 + 0 NA intron (ENSMUSG00000043719.14, intron 1 of 36) protein_coding-intron (ENSMUSG00000043719.14, intron 1 of 7) 18685 ENSMUSG00000043719.14 ENSMUSG00000043719 ENSMUST00000060896 Col6a6 protein_coding Interval_140791 chr6 121370144 121370834 + 0 NA Intergenic Intergenic 13669 ENSMUSG00000030109.15 ENSMUSG00000030109 ENSMUST00000170339 Slc6a12 protein_coding Interval_19660 chr10 107446243 107447011 + 0 NA Intergenic Intergenic -9268 ENSMUSG00000102934.1 ENSMUSG00000102934 ENSMUST00000194653 Gm38117 TEC Interval_91083 chr2 34897739 34898452 + 0 NA TTS (ENSMUSG00000026873.9) protein_coding-TTS (ENSMUSG00000026873.9) -14776 ENSMUSG00000086001.1 ENSMUSG00000086001 ENSMUST00000143469 Gm13448 processed_transcript Interval_80060 chr18 37089493 37090849 + 0 NA exon (ENSMUSG00000103255.1, exon 1 of 4) protein_coding-exon (ENSMUSG00000103255.1, exon 1 of 4) 158 ENSMUSG00000103255.1 ENSMUSG00000103255 ENSMUST00000007584 Pcdhac1 protein_coding Interval_98808 chr2 155146960 155147776 + 0 NA intron (ENSMUSG00000027598.16, intron 2 of 15) protein_coding-intron (ENSMUSG00000027598.16, intron 2 of 24) 13859 ENSMUSG00000027598.16 ENSMUSG00000027598 ENSMUST00000123497 Itch protein_coding Interval_133843 chr6 13245652 13245861 + 0 NA Intergenic Intergenic -17989 ENSMUSG00000118525.1 ENSMUSG00000118525 ENSMUST00000238854 AC121573.1 processed_pseudogene Interval_83393 chr18 84848951 84849556 + 0 NA intron (ENSMUSG00000024646.14, intron 2 of 5) protein_coding-intron (ENSMUSG00000024646.14, intron 2 of 5) -2161 ENSMUSG00000024646.14 ENSMUSG00000024646 ENSMUST00000159837 Cyb5a protein_coding Interval_74373 chr17 49683783 49684514 + 0 NA intron (ENSMUSG00000023999.14, intron 5 of 22) protein_coding-intron (ENSMUSG00000023999.14, intron 5 of 11) 68976 ENSMUSG00000023999.14 ENSMUSG00000023999 ENSMUST00000159354 Kif6 protein_coding Interval_69851 chr16 97544585 97544832 + 0 NA intron (ENSMUSG00000023341.15, intron 4 of 13) polymorphic_pseudogene-intron (ENSMUSG00000023341.15, intron 3 of 13) -13704 ENSMUSG00000023341.15 ENSMUSG00000023341 ENSMUST00000191103 Mx2 polymorphic_pseudogene Interval_30789 chr11 96468196 96468627 + 0 NA intron (ENSMUSG00000057058.16, intron 1 of 7) protein_coding-intron (ENSMUSG00000057058.16, intron 1 of 11) -3864 ENSMUSG00000075586.4 ENSMUSG00000075586 ENSMUST00000153012 Gm11529 processed_transcript Interval_118388 chr4 131056166 131056663 + 0 NA Intergenic Intergenic -45940 ENSMUSG00000086262.7 ENSMUSG00000086262 ENSMUST00000153810 A930031H19Rik lincRNA Interval_31180 chr11 98734181 98734850 + 0 NA Intergenic Intergenic -6286 ENSMUSG00000058756.13 ENSMUSG00000058756 ENSMUST00000124072 Thra protein_coding Interval_53705 chr14 61012285 61013476 + 0 NA intron (ENSMUSG00000060548.13, intron 3 of 5) protein_coding-intron (ENSMUSG00000060548.13, intron 3 of 9) 25011 ENSMUSG00000060548.13 ENSMUSG00000060548 ENSMUST00000225730 Tnfrsf19 protein_coding Interval_50375 chr14 12195437 12195654 + 0 NA intron (ENSMUSG00000021745.14, intron 3 of 3) protein_coding-intron (ENSMUSG00000021745.14, intron 15 of 29) 41562 ENSMUSG00000021745.14 ENSMUSG00000021745 ENSMUST00000134290 Ptprg protein_coding Interval_4865 chr1 80408491 80408757 + 0 NA Intergenic Intergenic -23439 ENSMUSG00000090637.2 ENSMUSG00000090637 ENSMUST00000164487 Gm6189 processed_pseudogene Interval_158356 chr8 82718696 82720394 + 0 NA Intergenic Intergenic -28071 ENSMUSG00000109893.1 ENSMUSG00000109893 ENSMUST00000211321 Gm9655 processed_pseudogene Interval_55184 chr14 79119803 79121087 + 0 NA intron (ENSMUSG00000058997.8, intron 37 of 44) protein_coding-intron (ENSMUSG00000058997.8, intron 37 of 44) -14044 ENSMUSG00000115637.1 ENSMUSG00000115637 ENSMUST00000227710 Gm30970 processed_pseudogene Interval_11859 chr1 186474732 186475095 + 0 NA Intergenic Intergenic 83768 ENSMUSG00000103690.1 ENSMUSG00000103690 ENSMUST00000195454 A730004F24Rik lincRNA Interval_69002 chr16 90042269 90044347 + 0 NA intron (ENSMUSG00000002489.16, intron 2 of 11) protein_coding-intron (ENSMUSG00000002489.16, intron 2 of 11) -46675 ENSMUSG00000116536.1 ENSMUSG00000116536 ENSMUST00000232386 Gm2805 processed_pseudogene Interval_142210 chr6 138657853 138658801 + 0 NA exon (ENSMUSG00000046717.5, exon 1 of 1) protein_coding-exon (ENSMUSG00000046717.5, exon 1 of 1) 217 ENSMUSG00000046717.5 ENSMUSG00000046717 ENSMUST00000054786 Igbp1b protein_coding Interval_154403 chr8 15729246 15729491 + 0 NA Intergenic Intergenic 99387 ENSMUSG00000110201.1 ENSMUSG00000110201 ENSMUST00000211202 Gm45675 TEC Interval_127141 chr5 100562939 100563427 + 0 NA promoter-TSS (ENSMUSG00000029322.12) protein_coding-promoter-TSS (ENSMUSG00000029322.12) 9009 ENSMUSG00000029322.12 ENSMUSG00000029322 ENSMUST00000144595 Plac8 protein_coding Interval_173115 chrX 72274296 72275390 + 0 NA promoter-TSS (ENSMUSG00000031340.8) protein_coding-promoter-TSS (ENSMUSG00000031340.8) -40 ENSMUSG00000031340.8 ENSMUSG00000031340 ENSMUST00000153740 Gabre protein_coding Interval_80328 chr18 39299009 39299517 + 0 NA intron (ENSMUSG00000036452.18, intron 19 of 22) protein_coding-intron (ENSMUSG00000036452.18, intron 19 of 22) 3427 ENSMUSG00000086312.1 ENSMUSG00000086312 ENSMUST00000128894 Gm15336 antisense Interval_39931 chr12 99867874 99869052 + 0 NA intron (ENSMUSG00000021176.6, intron 4 of 6) protein_coding-intron (ENSMUSG00000021176.6, intron 3 of 5) 15949 ENSMUSG00000021176.6 ENSMUSG00000021176 ENSMUST00000221197 Efcab11 protein_coding Interval_76277 chr17 78676882 78677943 + 0 NA exon (ENSMUSG00000024077.15, exon 5 of 16) protein_coding-exon (ENSMUSG00000024077.15, exon 5 of 16) 59784 ENSMUSG00000024077.15 ENSMUSG00000024077 ENSMUST00000145480 Strn protein_coding Interval_47551 chr13 87939598 87940017 + 0 NA Intergenic Intergenic 40492 ENSMUSG00000114960.1 ENSMUSG00000114960 ENSMUST00000223836 Gm47649 TEC Interval_84120 chr19 7326792 7327318 + 0 NA intron (ENSMUSG00000024969.15, intron 1 of 7) protein_coding-intron (ENSMUSG00000024969.15, intron 1 of 17) 14137 ENSMUSG00000024969.15 ENSMUSG00000024969 ENSMUST00000168324 Mark2 protein_coding Interval_89015 chr2 14544665 14545356 + 0 NA Intergenic Intergenic 32411 ENSMUSG00000084901.6 ENSMUSG00000084901 ENSMUST00000193364 Gm13266 processed_transcript Interval_68543 chr16 78529597 78529823 + 0 NA Intergenic Intergenic -30606 ENSMUSG00000116628.1 ENSMUSG00000116628 ENSMUST00000231846 4930478L05Rik antisense Interval_117094 chr4 119484909 119485667 + 0 NA intron (ENSMUSG00000048899.8, intron 1 of 3) protein_coding-intron (ENSMUSG00000048899.8, intron 1 of 4) 7221 ENSMUSG00000048899.8 ENSMUSG00000048899 ENSMUST00000126728 Rimkla protein_coding Interval_22646 chr11 12459672 12460476 + 0 NA intron (ENSMUSG00000020173.17, intron 1 of 11) protein_coding-intron (ENSMUSG00000020173.17, intron 1 of 14) -47930 ENSMUSG00000020173.17 ENSMUSG00000020173 ENSMUST00000146067 Cobl protein_coding Interval_131214 chr5 135855363 135855619 + 0 NA intron (ENSMUSG00000039860.19, intron 8 of 14) protein_coding-intron (ENSMUSG00000039860.19, intron 8 of 15) -10545 ENSMUSG00000085026.1 ENSMUSG00000085026 ENSMUST00000131896 Srrm3os antisense Interval_75997 chr17 74272056 74273571 + 0 NA intron (ENSMUSG00000058704.9, intron 1 of 8) protein_coding-intron (ENSMUSG00000058704.9, intron 1 of 8) 22050 ENSMUSG00000058704.9 ENSMUSG00000058704 ENSMUST00000232861 Memo1 protein_coding Interval_1441 chr1 23489250 23489473 + 0 NA Intergenic Intergenic 9822 ENSMUSG00000097920.1 ENSMUSG00000097920 ENSMUST00000180769 Gm7784 processed_pseudogene Interval_42568 chr13 15542167 15542380 + 0 NA intron (ENSMUSG00000021318.15, intron 2 of 9) protein_coding-intron (ENSMUSG00000021318.15, intron 2 of 14) -78537 ENSMUSG00000097806.3 ENSMUSG00000097806 ENSMUST00000193256 Gm6556 processed_transcript Interval_166497 chr9 60114292 60114888 + 0 NA intron (ENSMUSG00000032289.15, intron 6 of 16) protein_coding-intron (ENSMUSG00000032289.15, intron 1 of 11) -72411 ENSMUSG00000088090.1 ENSMUSG00000088090 ENSMUST00000157465 Gm23668 rRNA Interval_44710 chr13 47365590 47366444 + 0 NA intron (ENSMUSG00000114843.1, intron 2 of 2) lincRNA-intron (ENSMUSG00000114843.1, intron 2 of 2) 4631 ENSMUSG00000114843.1 ENSMUSG00000114843 ENSMUST00000224000 Gm35733 lincRNA Interval_90967 chr2 33789432 33789954 + 0 NA promoter-TSS (ENSMUSG00000038740.9) protein_coding-promoter-TSS (ENSMUSG00000038740.9) -934 ENSMUSG00000038740.9 ENSMUSG00000038740 ENSMUST00000146892 Mvb12b protein_coding Interval_105311 chr3 84806426 84806647 + 0 NA intron (ENSMUSG00000102805.5, intron 3 of 9) protein_coding-intron (ENSMUSG00000102805.5, intron 3 of 9) -9230 ENSMUSG00000028086.15 ENSMUSG00000028086 ENSMUST00000029727 Fbxw7 protein_coding Interval_111171 chr4 13803613 13804490 + 0 NA intron (ENSMUSG00000006586.15, intron 1 of 10) protein_coding-intron (ENSMUSG00000006586.15, intron 1 of 10) 52754 ENSMUSG00000006586.15 ENSMUSG00000006586 ENSMUST00000139736 Runx1t1 protein_coding Interval_155240 chr8 28579063 28579872 + 0 NA Intergenic Intergenic -14065 ENSMUSG00000097776.1 ENSMUSG00000097776 ENSMUST00000181267 Gm26795 lincRNA Interval_117655 chr4 125315892 125316200 + 0 NA Intergenic Intergenic 87449 ENSMUSG00000087010.1 ENSMUSG00000087010 ENSMUST00000130055 1700041M05Rik lincRNA Interval_57124 chr15 6730056 6730345 + 0 NA intron (ENSMUSG00000050310.9, intron 2 of 9) protein_coding-intron (ENSMUSG00000050310.9, intron 2 of 37) 21821 ENSMUSG00000050310.9 ENSMUSG00000050310 ENSMUST00000061656 Rictor protein_coding Interval_30192 chr11 90381208 90381846 + 0 NA exon (ENSMUSG00000003949.16, exon 1 of 3) protein_coding-exon (ENSMUSG00000003949.16, exon 1 of 3) 6446 ENSMUSG00000003949.16 ENSMUSG00000003949 ENSMUST00000145786 Hlf protein_coding Interval_148348 chr7 80665094 80665261 + 0 NA intron (ENSMUSG00000030527.15, intron 2 of 14) protein_coding-intron (ENSMUSG00000030527.15, intron 2 of 14) 29160 ENSMUSG00000084821.1 ENSMUSG00000084821 ENSMUST00000142678 Gm15880 antisense Interval_149448 chr7 98664386 98664858 + 0 NA Intergenic Intergenic 16025 ENSMUSG00000109101.1 ENSMUSG00000109101 ENSMUST00000207234 Gm45132 TEC Interval_52799 chr14 50686039 50686322 + 0 NA intron (ENSMUSG00000057179.6, intron 1 of 1) protein_coding-intron (ENSMUSG00000057179.6, intron 2 of 2) 6724 ENSMUSG00000057179.6 ENSMUSG00000057179 ENSMUST00000205897 Olfr747 protein_coding Interval_53473 chr14 57724232 57724504 + 0 NA intron (ENSMUSG00000021959.16, intron 1 of 2) protein_coding-intron (ENSMUSG00000021959.16, intron 2 of 7) 21735 ENSMUSG00000114942.1 ENSMUSG00000114942 ENSMUST00000174694 Gm49361 protein_coding Interval_171241 chr9 115557907 115558582 + 0 NA Intergenic Intergenic 68474 ENSMUSG00000094630.1 ENSMUSG00000094630 ENSMUST00000082810 n-R5s92 rRNA Interval_79210 chr18 25678836 25680157 + 0 NA intron (ENSMUSG00000024268.16, intron 1 of 12) protein_coding-intron (ENSMUSG00000024268.16, intron 1 of 12) -34274 ENSMUSG00000114511.1 ENSMUSG00000114511 ENSMUST00000224766 0710001A04Rik antisense Interval_165638 chr9 50593060 50594486 + 0 NA Intergenic Intergenic 10039 ENSMUSG00000000171.5 ENSMUSG00000000171 ENSMUST00000000175 Sdhd protein_coding Interval_76383 chr17 79782252 79782726 + 0 NA Intergenic Intergenic 10527 ENSMUSG00000117616.1 ENSMUSG00000117616 ENSMUST00000234208 Gm49984 lincRNA Interval_159180 chr8 91423058 91423991 + 0 NA intron (ENSMUSG00000055932.15, intron 4 of 4) protein_coding-intron (ENSMUSG00000055932.15, intron 3 of 8) -26782 ENSMUSG00000110079.1 ENSMUSG00000110079 ENSMUST00000211232 Gm45292 TEC Interval_85272 chr19 24271429 24272305 + 0 NA intron (ENSMUSG00000059363.10, intron 2 of 3) protein_coding-intron (ENSMUSG00000059363.10, intron 3 of 4) 6304 ENSMUSG00000059363.10 ENSMUSG00000059363 ENSMUST00000132688 Fxn protein_coding Interval_161103 chr8 117470411 117471711 + 0 NA Intergenic Intergenic 11796 ENSMUSG00000098483.1 ENSMUSG00000098483 ENSMUST00000183794 Mir7078 miRNA Interval_95866 chr2 117438240 117439513 + 0 NA Intergenic Intergenic -21179 ENSMUSG00000085681.1 ENSMUSG00000085681 ENSMUST00000138372 Gm13982 lincRNA Interval_40606 chr12 105992007 105992469 + 0 NA Intergenic Intergenic -33569 ENSMUSG00000021115.15 ENSMUSG00000021115 ENSMUST00000220629 Vrk1 protein_coding Interval_92111 chr2 53330312 53330913 + 0 NA Intergenic Intergenic -55771 ENSMUSG00000088928.1 ENSMUSG00000088928 ENSMUST00000158303 Gm25898 snRNA Interval_156176 chr8 45611060 45611816 + 0 NA intron (ENSMUSG00000031626.18, intron 1 of 23) protein_coding-intron (ENSMUSG00000031626.18, intron 1 of 25) -6298 ENSMUSG00000084954.2 ENSMUSG00000084954 ENSMUST00000142008 Gm16351 antisense Interval_129799 chr5 122420463 122423312 + 0 NA promoter-TSS (ENSMUSG00000029466.11) protein_coding-promoter-TSS (ENSMUSG00000029466.11) 13397 ENSMUSG00000105895.1 ENSMUSG00000105895 ENSMUST00000198417 Gm42829 sense_intronic Interval_117156 chr4 120118821 120119213 + 0 NA intron (ENSMUSG00000028634.17, intron 2 of 5) protein_coding-intron (ENSMUSG00000028634.17, intron 5 of 8) -42189 ENSMUSG00000028635.7 ENSMUSG00000028635 ENSMUST00000030384 Edn2 protein_coding Interval_6123 chr1 97696839 97697222 + 0 NA Intergenic Intergenic 19516 ENSMUSG00000040648.14 ENSMUSG00000040648 ENSMUST00000152788 Ppip5k2 protein_coding Interval_80713 chr18 46541547 46542675 + 0 NA Intergenic Intergenic -16140 ENSMUSG00000033319.5 ENSMUSG00000033319 ENSMUST00000036226 Fem1c protein_coding Interval_8889 chr1 151840087 151840258 + 0 NA Intergenic Intergenic 14783 ENSMUSG00000084557.1 ENSMUSG00000084557 ENSMUST00000122608 Gm25279 snRNA Interval_57200 chr15 7479779 7481063 + 0 NA Intergenic Intergenic 82524 ENSMUSG00000090199.1 ENSMUSG00000090199 ENSMUST00000161643 Gm16029 antisense Interval_9815 chr1 162615628 162615863 + 0 NA Intergenic Intergenic 13322 ENSMUSG00000091743.2 ENSMUSG00000091743 ENSMUST00000066241 Gm5705 processed_pseudogene Interval_102498 chr3 27216899 27218066 + 0 NA intron (ENSMUSG00000027698.14, intron 2 of 2) protein_coding-intron (ENSMUSG00000027698.14, intron 1 of 4) 29041 ENSMUSG00000027698.14 ENSMUSG00000027698 ENSMUST00000140872 Nceh1 protein_coding Interval_128085 chr5 110788311 110789436 + 0 NA promoter-TSS (ENSMUSG00000029512.11) protein_coding-promoter-TSS (ENSMUSG00000029512.11) -8258 ENSMUSG00000029507.16 ENSMUSG00000029507 ENSMUST00000149208 Pus1 protein_coding Interval_84390 chr19 10561282 10562108 + 0 NA Intergenic Intergenic -5959 ENSMUSG00000024667.12 ENSMUSG00000024667 ENSMUST00000131205 Tmem216 protein_coding Interval_83530 chr18 88893308 88894638 + 0 NA intron (ENSMUSG00000056153.15, intron 1 of 2) protein_coding-intron (ENSMUSG00000056153.15, intron 1 of 2) 286 ENSMUSG00000056153.15 ENSMUSG00000056153 ENSMUST00000147313 Socs6 protein_coding Interval_66788 chr16 37645023 37645335 + 0 NA Intergenic Intergenic 9187 ENSMUSG00000022820.4 ENSMUSG00000022820 ENSMUST00000231881 Ndufb4 protein_coding Interval_3598 chr1 59883150 59884342 + 0 NA Intergenic Intergenic 3943 ENSMUSG00000103131.1 ENSMUSG00000103131 ENSMUST00000193096 Gm37977 TEC Interval_58953 chr15 40741705 40742141 + 0 NA intron (ENSMUSG00000022306.9, intron 1 of 7) protein_coding-intron (ENSMUSG00000022306.9, intron 1 of 7) 86572 ENSMUSG00000022306.9 ENSMUSG00000022306 ENSMUST00000230319 Zfpm2 protein_coding Interval_70966 chr17 16904977 16905780 + 0 NA Intergenic Intergenic 16023 ENSMUSG00000116621.1 ENSMUSG00000116621 ENSMUST00000232084 Gm7483 unprocessed_pseudogene Interval_18926 chr10 93187336 93189071 + 0 NA intron (ENSMUSG00000020015.10, intron 1 of 2) protein_coding-intron (ENSMUSG00000020015.10, intron 1 of 16) 25418 ENSMUSG00000089214.1 ENSMUSG00000089214 ENSMUST00000158589 Mir1931 miRNA Interval_128997 chr5 116537576 116539124 + 0 NA intron (ENSMUSG00000063919.11, intron 1 of 12) protein_coding-intron (ENSMUSG00000063919.11, intron 1 of 12) 35145 ENSMUSG00000106914.1 ENSMUSG00000106914 ENSMUST00000201262 Gm42854 sense_intronic Interval_162476 chr8 129249280 129249551 + 0 NA Intergenic Intergenic -3583 ENSMUSG00000094530.2 ENSMUSG00000094530 ENSMUST00000180210 Gm21399 processed_pseudogene Interval_125274 chr5 65832520 65833217 + 0 NA Intergenic Intergenic -20464 ENSMUSG00000106713.1 ENSMUSG00000106713 ENSMUST00000201573 Gm42645 TEC Interval_46160 chr13 62111800 62112386 + 0 NA TTS (ENSMUSG00000113566.1) lincRNA-TTS (ENSMUSG00000113566.1) -13636 ENSMUSG00000113504.1 ENSMUSG00000113504 ENSMUST00000221048 Selenok-ps5 processed_pseudogene Interval_157603 chr8 71665417 71666190 + 0 NA intron (ENSMUSG00000034799.16, intron 3 of 44) protein_coding-intron (ENSMUSG00000034799.16, intron 3 of 43) 5933 ENSMUSG00000034799.16 ENSMUSG00000034799 ENSMUST00000175780 Unc13a protein_coding Interval_121508 chr5 3007006 3007445 + 0 NA Intergenic Intergenic -6173 ENSMUSG00000098947.2 ENSMUSG00000098947 ENSMUST00000183378 V1rg10 polymorphic_pseudogene Interval_133318 chr5 151654899 151655127 + 0 NA Intergenic Intergenic -10251 ENSMUSG00000033970.15 ENSMUSG00000033970 ENSMUST00000136752 Rfc3 protein_coding Interval_57609 chr15 12806911 12807562 + 0 NA TTS (ENSMUSG00000022195.7) protein_coding-TTS (ENSMUSG00000022195.7) -2063 ENSMUSG00000115024.1 ENSMUSG00000115024 ENSMUST00000228527 Gm49277 processed_pseudogene Interval_25413 chr11 47840079 47840347 + 0 NA intron (ENSMUSG00000020354.15, intron 1 of 2) protein_coding-intron (ENSMUSG00000020354.15, intron 1 of 2) 72332 ENSMUSG00000065804.1 ENSMUSG00000065804 ENSMUST00000083870 Gm23039 snRNA Interval_103408 chr3 41346601 41347138 + 0 NA Intergenic Intergenic -7278 ENSMUSG00000105297.1 ENSMUSG00000105297 ENSMUST00000196142 1700052H01Rik lincRNA Interval_77788 chr18 3498765 3499491 + 0 NA Intergenic Intergenic -8795 ENSMUSG00000024232.2 ENSMUSG00000024232 ENSMUST00000025075 Bambi protein_coding Interval_168280 chr9 78395464 78396448 + 0 NA exon (ENSMUSG00000070291.4, exon 1 of 17) protein_coding-exon (ENSMUSG00000070291.4, exon 1 of 17) 179 ENSMUSG00000070291.4 ENSMUSG00000070291 ENSMUST00000113367 Ddx43 protein_coding Interval_135196 chr6 37429728 37431633 + 0 NA intron (ENSMUSG00000038648.5, intron 1 of 11) protein_coding-intron (ENSMUSG00000038648.5, intron 1 of 11) -94145 ENSMUSG00000038648.5 ENSMUSG00000038648 ENSMUST00000128534 Creb3l2 protein_coding Interval_139272 chr6 97759135 97759528 + 0 NA Intergenic Intergenic 28892 ENSMUSG00000094510.1 ENSMUSG00000094510 ENSMUST00000180099 Gm24565 snRNA Interval_174638 chrX 161194807 161195061 + 0 NA intron (ENSMUSG00000000037.17, intron 11 of 11) protein_coding-intron (ENSMUSG00000000037.17, intron 6 of 25) 77906 ENSMUSG00000080983.1 ENSMUSG00000080983 ENSMUST00000119301 Gm5419 processed_pseudogene Interval_115012 chr4 88463236 88463432 + 0 NA Intergenic Intergenic -24406 ENSMUSG00000028497.12 ENSMUSG00000028497 ENSMUST00000030221 Hacd4 protein_coding Interval_35184 chr12 17881219 17882985 + 0 NA promoter-TSS (ENSMUSG00000113294.1) unprocessed_pseudogene-promoter-TSS (ENSMUSG00000113294.1) -95 ENSMUSG00000113294.1 ENSMUSG00000113294 ENSMUST00000223226 Gm49326 unprocessed_pseudogene Interval_162198 chr8 125870239 125871310 + 0 NA intron (ENSMUSG00000060212.13, intron 8 of 16) protein_coding-intron (ENSMUSG00000060212.13, intron 8 of 33) -27140 ENSMUSG00000100812.1 ENSMUSG00000100812 ENSMUST00000188193 A730098A19Rik antisense Interval_142950 chr6 147240373 147240826 + 0 NA Intergenic Intergenic 3202 ENSMUSG00000086021.1 ENSMUSG00000086021 ENSMUST00000153521 Gm15767 lincRNA Interval_139033 chr6 94376507 94376996 + 0 NA Intergenic Intergenic 27217 ENSMUSG00000107435.1 ENSMUSG00000107435 ENSMUST00000204684 Gm19908 processed_pseudogene Interval_32237 chr11 106381574 106382164 + 0 NA intron (ENSMUSG00000001029.15, intron 2 of 3) protein_coding-intron (ENSMUSG00000001029.15, intron 1 of 3) -1068 ENSMUSG00000001029.15 ENSMUSG00000001029 ENSMUST00000106809 Icam2 protein_coding Interval_57729 chr15 17088794 17089988 + 0 NA Intergenic Intergenic -12452 ENSMUSG00000115182.1 ENSMUSG00000115182 ENSMUST00000227358 Gm49128 lincRNA Interval_169269 chr9 96004321 96004871 + 0 NA intron (ENSMUSG00000032410.13, intron 20 of 23) protein_coding-intron (ENSMUSG00000032410.13, intron 23 of 41) 14809 ENSMUSG00000101867.1 ENSMUSG00000101867 ENSMUST00000186632 C78334 antisense Interval_40163 chr12 102154748 102154989 + 0 NA intron (ENSMUSG00000041771.14, intron 2 of 16) protein_coding-intron (ENSMUSG00000041771.14, intron 2 of 16) -24962 ENSMUSG00000090050.1 ENSMUSG00000090050 ENSMUST00000160954 Gm16339 antisense Interval_124701 chr5 53437034 53438262 + 0 NA Intergenic Intergenic 19075 ENSMUSG00000088646.1 ENSMUSG00000088646 ENSMUST00000158021 Gm26486 rRNA Interval_105244 chr3 84172538 84172987 + 0 NA intron (ENSMUSG00000027993.16, intron 8 of 10) protein_coding-intron (ENSMUSG00000027993.16, intron 9 of 11) -1342 ENSMUSG00000104043.1 ENSMUSG00000104043 ENSMUST00000193882 Gm6525 protein_coding Interval_95149 chr2 104333915 104334448 + 0 NA intron (ENSMUSG00000068373.15, intron 1 of 20) protein_coding-intron (ENSMUSG00000068373.15, intron 1 of 20) 42607 ENSMUSG00000081721.3 ENSMUSG00000081721 ENSMUST00000120886 Gm13882 processed_pseudogene Interval_138072 chr6 84973324 84973626 + 0 NA intron (ENSMUSG00000033769.16, intron 6 of 6) protein_coding-intron (ENSMUSG00000033769.16, intron 6 of 16) 52352 ENSMUSG00000108012.1 ENSMUSG00000108012 ENSMUST00000204154 Gm44012 antisense Interval_40871 chr12 109003044 109003640 + 0 NA intron (ENSMUSG00000040877.16, intron 4 of 6) protein_coding-intron (ENSMUSG00000040877.16, intron 5 of 7) -11691 ENSMUSG00000113478.1 ENSMUSG00000113478 ENSMUST00000220743 Gm18405 processed_pseudogene Interval_166017 chr9 55505078 55505793 + 0 NA intron (ENSMUSG00000032314.14, intron 1 of 7) protein_coding-intron (ENSMUSG00000032314.14, intron 1 of 11) 6685 ENSMUSG00000032314.14 ENSMUSG00000032314 ENSMUST00000142587 Etfa protein_coding Interval_168836 chr9 87839688 87840503 + 0 NA Intergenic Intergenic 48492 ENSMUSG00000093937.1 ENSMUSG00000093937 ENSMUST00000180264 Gm25528 snoRNA Interval_107159 chr3 104026294 104027141 + 0 NA intron (ENSMUSG00000052539.15, intron 16 of 20) protein_coding-intron (ENSMUSG00000052539.15, intron 16 of 21) 31424 ENSMUSG00000104721.1 ENSMUSG00000104721 ENSMUST00000199859 Gm42696 sense_intronic Interval_29117 chr11 80426137 80426892 + 0 NA Intergenic Intergenic -2172 ENSMUSG00000017428.16 ENSMUSG00000017428 ENSMUST00000125591 Psmd11 protein_coding Interval_71244 chr17 21534613 21535873 + 0 NA promoter-TSS (ENSMUSG00000051341.6) protein_coding-promoter-TSS (ENSMUSG00000051341.6) -296 ENSMUSG00000051341.6 ENSMUSG00000051341 ENSMUST00000079242 Zfp52 protein_coding Interval_85828 chr19 32196195 32197257 + 0 NA promoter-TSS (ENSMUSG00000040451.18) protein_coding-promoter-TSS (ENSMUSG00000040451.18) 12547 ENSMUSG00000118064.1 ENSMUSG00000118064 ENSMUST00000235377 Gm50210 sense_intronic Interval_143011 chr6 148354092 148355449 + 0 NA promoter-TSS (ENSMUSG00000063171.4) transcribed_processed_pseudogene-promoter-TSS (ENSMUSG00000063171.4) 60 ENSMUSG00000063171.4 ENSMUSG00000063171 ENSMUST00000204242 Rps4l transcribed_processed_pseudogene Interval_144813 chr7 28397973 28398810 + 0 NA promoter-TSS (ENSMUSG00000003437.14) protein_coding-promoter-TSS (ENSMUSG00000003437.14) 3628 ENSMUSG00000003437.14 ENSMUSG00000003437 ENSMUST00000146913 Paf1 protein_coding Interval_90471 chr2 30676475 30677913 + 0 NA intron (ENSMUSG00000087268.1, intron 1 of 3) lincRNA-intron (ENSMUSG00000087268.1, intron 1 of 3) -7286 ENSMUSG00000087268.1 ENSMUSG00000087268 ENSMUST00000144704 Gm14486 lincRNA Interval_72702 chr17 31636024 31637827 + 0 NA promoter-TSS (ENSMUSG00000024039.15) protein_coding-promoter-TSS (ENSMUSG00000024039.15) -3761 ENSMUSG00000024039.15 ENSMUSG00000024039 ENSMUST00000236909 Cbs protein_coding Interval_6903 chr1 120549066 120550915 + 0 NA Intergenic Intergenic -45234 ENSMUSG00000026390.7 ENSMUSG00000026390 ENSMUST00000186432 Marco protein_coding Interval_127289 chr5 102126672 102126998 + 0 NA Intergenic Intergenic -32691 ENSMUSG00000105088.1 ENSMUSG00000105088 ENSMUST00000195986 Gm17978 processed_pseudogene Interval_40499 chr12 105271445 105271779 + 0 NA Intergenic Intergenic -48916 ENSMUSG00000041359.14 ENSMUSG00000041359 ENSMUST00000176952 Tcl1 protein_coding Interval_43955 chr13 38361939 38362147 + 0 NA intron (ENSMUSG00000039004.6, intron 1 of 6) protein_coding-intron (ENSMUSG00000039004.6, intron 1 of 6) 15890 ENSMUSG00000039004.6 ENSMUSG00000039004 ENSMUST00000223628 Bmp6 protein_coding Interval_126013 chr5 76836662 76837298 + 0 NA intron (ENSMUSG00000036377.19, intron 4 of 11) protein_coding-intron (ENSMUSG00000036377.19, intron 2 of 3) 58098 ENSMUSG00000055923.16 ENSMUSG00000055923 ENSMUST00000134805 Aasdh protein_coding Interval_166599 chr9 61221937 61223153 + 0 NA Intergenic Intergenic 15866 ENSMUSG00000111449.1 ENSMUSG00000111449 ENSMUST00000214812 Gm34105 lincRNA Interval_49511 chr13 112522979 112523804 + 0 NA TTS (ENSMUSG00000050377.8) protein_coding-TTS (ENSMUSG00000050377.8) 42275 ENSMUSG00000050377.8 ENSMUSG00000050377 ENSMUST00000225397 Il31ra protein_coding Interval_174071 chrX 134295526 134297589 + 0 NA intron (ENSMUSG00000033578.7, intron 1 of 1) protein_coding-intron (ENSMUSG00000033578.7, intron 1 of 1) 1332 ENSMUSG00000033578.7 ENSMUSG00000033578 ENSMUST00000037687 Tmem35a protein_coding Interval_155017 chr8 25731336 25731651 + 0 NA intron (ENSMUSG00000061313.8, intron 14 of 15) protein_coding-intron (ENSMUSG00000061313.8, intron 16 of 17) 10905 ENSMUSG00000031570.17 ENSMUSG00000031570 ENSMUST00000146762 Plpp5 protein_coding Interval_142458 chr6 142506892 142508480 + 0 NA exon (ENSMUSG00000030246.12, exon 1 of 5) protein_coding-exon (ENSMUSG00000030246.12, exon 1 of 5) 257 ENSMUSG00000030246.12 ENSMUSG00000030246 ENSMUST00000134191 Ldhb protein_coding Interval_88616 chr2 6818419 6820636 + 0 NA intron (ENSMUSG00000002107.18, intron 2 of 13) protein_coding-intron (ENSMUSG00000002107.18, intron 3 of 15) 53070 ENSMUSG00000002107.18 ENSMUSG00000002107 ENSMUST00000182037 Celf2 protein_coding Interval_166011 chr9 55429420 55431115 + 0 NA intron (ENSMUSG00000032313.11, intron 9 of 10) protein_coding-intron (ENSMUSG00000032313.11, intron 8 of 10) 81853 ENSMUSG00000032314.14 ENSMUSG00000032314 ENSMUST00000142587 Etfa protein_coding Interval_167490 chr9 69948889 69949705 + 0 NA Intergenic Intergenic 40671 ENSMUSG00000101555.1 ENSMUSG00000101555 ENSMUST00000185564 Gm28731 antisense Interval_125206 chr5 65345170 65345386 + 0 NA Intergenic Intergenic -3130 ENSMUSG00000029195.10 ENSMUSG00000029195 ENSMUST00000205084 Klb protein_coding Interval_110866 chr4 9148735 9149796 + 0 NA Intergenic Intergenic -60738 ENSMUSG00000075958.1 ENSMUSG00000075958 ENSMUST00000082782 Gm23423 snRNA Interval_85304 chr19 24528213 24528647 + 0 NA intron (ENSMUSG00000024867.14, intron 1 of 3) protein_coding-intron (ENSMUSG00000024867.14, intron 1 of 14) 27408 ENSMUSG00000024867.14 ENSMUSG00000024867 ENSMUST00000145829 Pip5k1b protein_coding Interval_133603 chr6 7498184 7498464 + 0 NA Intergenic Intergenic -42630 ENSMUSG00000107493.1 ENSMUSG00000107493 ENSMUST00000204531 Gm44048 processed_pseudogene Interval_138095 chr6 85136986 85138222 + 0 NA exon (ENSMUSG00000033735.9, exon 1 of 3) protein_coding-exon (ENSMUSG00000033735.9, exon 1 of 3) 162 ENSMUSG00000033735.9 ENSMUSG00000033735 ENSMUST00000174286 Spr protein_coding Interval_123237 chr5 30814200 30815422 + 0 NA promoter-TSS (ENSMUSG00000106229.1) sense_intronic-promoter-TSS (ENSMUSG00000106229.1) -809 ENSMUSG00000106229.1 ENSMUSG00000106229 ENSMUST00000198244 Gm19409 sense_intronic Interval_6781 chr1 119442873 119444516 + 0 NA Intergenic Intergenic -21446 ENSMUSG00000037035.5 ENSMUSG00000037035 ENSMUST00000038765 Inhbb protein_coding Interval_77100 chr17 86558934 86559872 + 0 NA intron (ENSMUSG00000045038.14, intron 11 of 14) protein_coding-intron (ENSMUSG00000045038.14, intron 12 of 15) -54171 ENSMUSG00000071036.2 ENSMUSG00000071036 ENSMUST00000095186 Gm10309 protein_coding Interval_174493 chrX 153366722 153367249 + 0 NA intron (ENSMUSG00000041649.13, intron 3 of 7) protein_coding-intron (ENSMUSG00000041649.13, intron 3 of 7) 37085 ENSMUSG00000080743.2 ENSMUSG00000080743 ENSMUST00000122032 Gm7150 processed_pseudogene Interval_56655 chr14 121199172 121199459 + 0 NA intron (ENSMUSG00000025555.14, intron 1 of 7) protein_coding-intron (ENSMUSG00000025555.14, intron 2 of 26) -49391 ENSMUSG00000085133.2 ENSMUSG00000085133 ENSMUST00000130256 B930095G15Rik sense_intronic Interval_80986 chr18 52322928 52323759 + 0 NA Intergenic Intergenic -8206 ENSMUSG00000024510.6 ENSMUSG00000024510 ENSMUST00000025388 Ftmt protein_coding Interval_18344 chr10 85063377 85063799 + 0 NA Intergenic Intergenic 38907 ENSMUSG00000050035.7 ENSMUSG00000050035 ENSMUST00000216889 Fhl4 protein_coding Interval_152190 chr7 130540529 130541862 + 0 NA intron (ENSMUSG00000040331.16, intron 1 of 1) protein_coding-intron (ENSMUSG00000030849.18, intron 2 of 6) -1987 ENSMUSG00000040331.16 ENSMUSG00000040331 ENSMUST00000161414 Nsmce4a protein_coding Interval_31633 chr11 101910188 101910942 + 0 NA Intergenic Intergenic -16191 ENSMUSG00000001493.9 ENSMUSG00000001493 ENSMUST00000057054 Meox1 protein_coding Interval_124444 chr5 47634659 47634911 + 0 NA exon (ENSMUSG00000106402.1, exon 1 of 1) processed_pseudogene-exon (ENSMUSG00000106402.1, exon 1 of 1) 283 ENSMUSG00000106402.1 ENSMUSG00000106402 ENSMUST00000197690 Gm17824 processed_pseudogene Interval_148352 chr7 80687914 80689251 + 0 NA intron (ENSMUSG00000030527.15, intron 1 of 1) protein_coding-intron (ENSMUSG00000030527.15, intron 1 of 14) 52565 ENSMUSG00000084821.1 ENSMUSG00000084821 ENSMUST00000142678 Gm15880 antisense Interval_24298 chr11 32182126 32182751 + 0 NA Intergenic Intergenic -2567 ENSMUSG00000081613.1 ENSMUSG00000081613 ENSMUST00000121140 Gm12109 processed_pseudogene Interval_22915 chr11 17346521 17346841 + 0 NA Intergenic Intergenic -48262 ENSMUSG00000082797.3 ENSMUSG00000082797 ENSMUST00000117065 Gm12015 processed_pseudogene Interval_24536 chr11 34149277 34150026 + 0 NA Intergenic Intergenic 7824 ENSMUSG00000086243.1 ENSMUSG00000086243 ENSMUST00000131630 Gm12121 lincRNA Interval_111429 chr4 21579131 21579693 + 0 NA Intergenic Intergenic -46968 ENSMUSG00000083654.1 ENSMUSG00000083654 ENSMUST00000118187 Gm11875 processed_pseudogene Interval_82305 chr18 70529572 70531730 + 0 NA promoter-TSS (ENSMUSG00000038425.18) protein_coding-promoter-TSS (ENSMUSG00000038425.18) 13865 ENSMUSG00000098721.1 ENSMUSG00000098721 ENSMUST00000184246 Mir6357 miRNA Interval_113441 chr4 55017245 55017557 + 0 NA intron (ENSMUSG00000060206.11, intron 5 of 12) protein_coding-intron (ENSMUSG00000060206.11, intron 3 of 10) 72353 ENSMUSG00000060206.11 ENSMUSG00000060206 ENSMUST00000079605 Zfp462 protein_coding Interval_75951 chr17 73574214 73574765 + 0 NA exon (ENSMUSG00000024064.14, exon 2 of 2) protein_coding-exon (ENSMUSG00000024064.14, exon 2 of 2) -34563 ENSMUSG00000117118.1 ENSMUSG00000117118 ENSMUST00000232782 Gm49878 antisense Interval_14960 chr10 41472579 41473499 + 0 NA Intergenic Intergenic -4040 ENSMUSG00000019823.17 ENSMUSG00000019823 ENSMUST00000138657 Mical1 protein_coding Interval_68709 chr16 84864535 84865833 + 0 NA Intergenic Intergenic 9144 ENSMUSG00000008976.16 ENSMUSG00000008976 ENSMUST00000139101 Gabpa protein_coding Interval_105074 chr3 80993149 80993398 + 0 NA Intergenic Intergenic -7721 ENSMUSG00000103419.1 ENSMUSG00000103419 ENSMUST00000194419 Gm29808 unprocessed_pseudogene Interval_152310 chr7 131647598 131648124 + 0 NA intron (ENSMUSG00000030849.18, intron 2 of 6) protein_coding-intron (ENSMUSG00000030849.18, intron 2 of 6) 27021 ENSMUSG00000109066.1 ENSMUSG00000109066 ENSMUST00000207218 Gm4585 processed_pseudogene Interval_106158 chr3 93813177 93813694 + 0 NA Intergenic Intergenic -12585 ENSMUSG00000058005.3 ENSMUSG00000058005 ENSMUST00000081780 Tdpoz3 protein_coding Interval_73145 chr17 35074034 35074474 + 0 NA TTS (ENSMUSG00000073413.9) protein_coding-TTS (ENSMUSG00000073413.9) -2901 ENSMUSG00000013766.11 ENSMUSG00000013766 ENSMUST00000172959 Ly6g6e protein_coding Interval_105544 chr3 87550210 87550425 + 0 NA promoter-TSS (ENSMUSG00000118505.1) protein_coding-promoter-TSS (ENSMUSG00000118505.1) 218 ENSMUSG00000118505.1 ENSMUSG00000118505 ENSMUST00000238853 ETV3L protein_coding Interval_137010 chr6 66336710 66336920 + 0 NA Intergenic Intergenic 61901 ENSMUSG00000107837.1 ENSMUSG00000107837 ENSMUST00000203090 Gm44281 processed_pseudogene Interval_33385 chr11 116247073 116248561 + 0 NA TTS (ENSMUSG00000020780.15) protein_coding-TTS (ENSMUSG00000020780.15) -9740 ENSMUSG00000034282.3 ENSMUSG00000034282 ENSMUST00000037007 Evpl protein_coding Interval_133483 chr6 5570785 5571159 + 0 NA Intergenic Intergenic -74711 ENSMUSG00000019577.6 ENSMUSG00000019577 ENSMUST00000134068 Pdk4 protein_coding Interval_173018 chrX 63366239 63366521 + 0 NA Intergenic Intergenic -10732 ENSMUSG00000084396.1 ENSMUSG00000084396 ENSMUST00000117461 Gm14657 processed_pseudogene Interval_147479 chr7 67642985 67643459 + 0 NA exon (ENSMUSG00000030556.13, exon 1 of 8) protein_coding-exon (ENSMUSG00000030556.13, exon 1 of 8) 5457 ENSMUSG00000109558.1 ENSMUSG00000109558 ENSMUST00000209153 Gm45100 processed_pseudogene Interval_167196 chr9 66093815 66095546 + 0 NA exon (ENSMUSG00000032382.14, exon 9 of 15) protein_coding-exon (ENSMUSG00000032382.14, exon 9 of 15) 11044 ENSMUSG00000032382.14 ENSMUSG00000032382 ENSMUST00000145449 Snx1 protein_coding Interval_89313 chr2 19255996 19256542 + 0 NA intron (ENSMUSG00000037683.14, intron 8 of 19) protein_coding-intron (ENSMUSG00000037683.14, intron 8 of 18) 56967 ENSMUSG00000037683.14 ENSMUSG00000037683 ENSMUST00000049255 Armc3 protein_coding Interval_38656 chr12 80855426 80855917 + 0 NA intron (ENSMUSG00000021133.9, intron 3 of 6) protein_coding-intron (ENSMUSG00000021133.9, intron 2 of 5) -55806 ENSMUSG00000065115.1 ENSMUSG00000065115 ENSMUST00000083181 Gm23298 snRNA Interval_60993 chr15 78575867 78577061 + 0 NA intron (ENSMUSG00000116097.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000116097.1, intron 1 of 1) 5152 ENSMUSG00000116097.1 ENSMUSG00000116097 ENSMUST00000229702 Gm36738 lincRNA Interval_145031 chr7 29538908 29539095 + 0 NA TTS (ENSMUSG00000074224.3) transcribed_unitary_pseudogene-TTS (ENSMUSG00000074224.3) 14458 ENSMUSG00000074224.3 ENSMUSG00000074224 ENSMUST00000098602 4932431P20Rik transcribed_unitary_pseudogene Interval_16798 chr10 68224243 68224447 + 0 NA intron (ENSMUSG00000019947.10, intron 3 of 9) protein_coding-intron (ENSMUSG00000019947.10, intron 3 of 10) 54395 ENSMUSG00000019947.10 ENSMUSG00000019947 ENSMUST00000218425 Arid5b protein_coding Interval_151329 chr7 121092900 121093424 + 0 NA intron (ENSMUSG00000034990.15, intron 5 of 7) protein_coding-intron (ENSMUSG00000034990.15, intron 5 of 28) 11512 ENSMUSG00000034990.15 ENSMUSG00000034990 ENSMUST00000163275 Otoa protein_coding Interval_146304 chr7 45230973 45231325 + 0 NA promoter-TSS (ENSMUSG00000030796.17) protein_coding-promoter-TSS (ENSMUSG00000030796.17) 7725 ENSMUSG00000030798.15 ENSMUSG00000030798 ENSMUST00000210372 Cd37 protein_coding Interval_64220 chr16 9267102 9267676 + 0 NA Intergenic Intergenic 108619 ENSMUSG00000116123.1 ENSMUSG00000116123 ENSMUST00000229655 Gm49451 lincRNA Interval_83813 chr19 4828326 4829394 + 0 NA intron (ENSMUSG00000034108.6, intron 5 of 7) protein_coding-intron (ENSMUSG00000034108.6, intron 5 of 7) 10359 ENSMUSG00000034108.6 ENSMUSG00000034108 ENSMUST00000235425 Ccs protein_coding Interval_19329 chr10 96757490 96757794 + 0 NA Intergenic Intergenic 12186 ENSMUSG00000112588.1 ENSMUSG00000112588 ENSMUST00000218614 Gm6859 processed_pseudogene Interval_172754 chrX 48314373 48315350 + 0 NA Intergenic Intergenic 7818 ENSMUSG00000088918.1 ENSMUSG00000088918 ENSMUST00000158293 Gm22612 snRNA Interval_7154 chr1 127262229 127263349 + 0 NA intron (ENSMUSG00000036155.13, intron 2 of 10) protein_coding-intron (ENSMUSG00000036155.13, intron 2 of 17) -7735 ENSMUSG00000104378.1 ENSMUSG00000104378 ENSMUST00000194151 Gm37510 TEC Interval_69291 chr16 91953747 91955400 + 0 NA intron (ENSMUSG00000087190.2, intron 2 of 5) antisense-intron (ENSMUSG00000087190.2, intron 2 of 5) -10425 ENSMUSG00000099268.1 ENSMUSG00000099268 ENSMUST00000184087 Gm27773 miRNA Interval_21455 chr10 128710682 128712544 + 0 NA intron (ENSMUSG00000025359.10, intron 2 of 4) protein_coding-intron (ENSMUSG00000025359.10, intron 1 of 10) 6433 ENSMUSG00000025359.10 ENSMUSG00000025359 ENSMUST00000054125 Pmel protein_coding Interval_124051 chr5 37835719 37836544 + 0 NA Intergenic Intergenic -11549 ENSMUSG00000048450.10 ENSMUSG00000048450 ENSMUST00000183013 Msx1 protein_coding Interval_44627 chr13 46798302 46799323 + 0 NA intron (ENSMUSG00000021375.11, intron 19 of 25) protein_coding-intron (ENSMUSG00000021375.11, intron 19 of 37) 10245 ENSMUSG00000021375.11 ENSMUSG00000021375 ENSMUST00000224923 Kif13a protein_coding Interval_167771 chr9 72642849 72643383 + 0 NA Intergenic Intergenic 9669 ENSMUSG00000064735.1 ENSMUSG00000064735 ENSMUST00000082801 Gm23057 snRNA Interval_110350 chr3 157274795 157275026 + 0 NA intron (ENSMUSG00000040037.13, intron 6 of 6) protein_coding-intron (ENSMUSG00000040037.13, intron 6 of 6) -37579 ENSMUSG00000094982.1 ENSMUSG00000094982 ENSMUST00000177876 Gm23725 snRNA Interval_43164 chr13 24786236 24786492 + 0 NA Intergenic Intergenic -15656 ENSMUSG00000019132.11 ENSMUSG00000019132 ENSMUST00000155575 BC005537 protein_coding Interval_126291 chr5 86172109 86173478 + 0 NA promoter-TSS (ENSMUSG00000035898.13) protein_coding-promoter-TSS (ENSMUSG00000035898.13) -54 ENSMUSG00000035898.13 ENSMUSG00000035898 ENSMUST00000147734 Uba6 protein_coding Interval_72683 chr17 31531234 31532534 + 0 NA TTS (ENSMUSG00000024038.17) protein_coding-TTS (ENSMUSG00000024038.17) 3576 ENSMUSG00000104159.1 ENSMUSG00000104159 ENSMUST00000193280 Gm38099 TEC Interval_39866 chr12 99215383 99216327 + 0 NA intron (ENSMUSG00000033713.12, intron 2 of 3) protein_coding-intron (ENSMUSG00000033713.12, intron 4 of 5) -29816 ENSMUSG00000093419.1 ENSMUSG00000093419 ENSMUST00000177490 Gm19898 processed_pseudogene Interval_37769 chr12 71863115 71863691 + 0 NA intron (ENSMUSG00000034574.10, intron 1 of 14) protein_coding-intron (ENSMUSG00000034574.10, intron 1 of 25) -16112 ENSMUSG00000098224.1 ENSMUSG00000098224 ENSMUST00000183329 Gm7985 processed_pseudogene Interval_27769 chr11 69876788 69877508 + 0 NA intron (ENSMUSG00000094845.2, intron 4 of 6) protein_coding-intron (ENSMUSG00000094845.2, intron 4 of 6) 905 ENSMUSG00000094845.2 ENSMUSG00000094845 ENSMUST00000178597 Tmem95 protein_coding Interval_129317 chr5 119027362 119027825 + 0 NA Intergenic Intergenic -30597 ENSMUSG00000107371.1 ENSMUSG00000107371 ENSMUST00000202922 Gm43784 TEC Interval_126708 chr5 92168040 92169258 + 0 NA intron (ENSMUSG00000029407.10, intron 7 of 21) protein_coding-intron (ENSMUSG00000029407.10, intron 7 of 23) -12740 ENSMUSG00000029407.10 ENSMUSG00000029407 ENSMUST00000202362 Uso1 protein_coding Interval_114586 chr4 82755598 82756508 + 0 NA Intergenic Intergenic -50303 ENSMUSG00000008575.17 ENSMUSG00000008575 ENSMUST00000152588 Nfib protein_coding Interval_11623 chr1 183411363 183412167 + 0 NA Intergenic Intergenic -2701 ENSMUSG00000104212.1 ENSMUSG00000104212 ENSMUST00000193285 Gm37986 lincRNA Interval_5100 chr1 84925215 84926285 + 0 NA intron (ENSMUSG00000026220.6, intron 2 of 4) protein_coding-intron (ENSMUSG00000026220.6, intron 2 of 4) 9107 ENSMUSG00000026220.6 ENSMUSG00000026220 ENSMUST00000186980 Slc16a14 protein_coding Interval_49600 chr13 113381219 113381541 + 0 NA Intergenic Intergenic -21708 ENSMUSG00000088814.1 ENSMUSG00000088814 ENSMUST00000158189 Gm22385 rRNA Interval_127641 chr5 106037799 106038450 + 0 NA Intergenic Intergenic 34309 ENSMUSG00000095052.1 ENSMUSG00000095052 ENSMUST00000180111 Gm25672 snRNA Interval_70193 chr17 6072949 6073876 + 0 NA intron (ENSMUSG00000015659.12, intron 2 of 5) protein_coding-intron (ENSMUSG00000015659.12, intron 2 of 15) -6425 ENSMUSG00000034345.14 ENSMUSG00000034345 ENSMUST00000100955 Gtf2h5 protein_coding Interval_245 KZ289068.1 283155 284510 + 0 NA NA NA NA NA Interval_121346 chr4 155135654 155137621 + 0 NA intron (ENSMUSG00000029049.14, intron 12 of 13) protein_coding-intron (ENSMUSG00000029049.14, intron 12 of 13) 50048 ENSMUSG00000029049.14 ENSMUSG00000029049 ENSMUST00000129415 Morn1 protein_coding Interval_99369 chr2 160360049 160360970 + 0 NA Intergenic Intergenic 6556 ENSMUSG00000074622.4 ENSMUSG00000074622 ENSMUST00000099126 Mafb protein_coding Interval_147186 chr7 64226618 64227065 + 0 NA promoter-TSS (ENSMUSG00000030523.18) protein_coding-promoter-TSS (ENSMUSG00000030523.18) 13651 ENSMUSG00000108770.1 ENSMUSG00000108770 ENSMUST00000206404 Gm44719 TEC Interval_26168 chr11 54851593 54853027 + 0 NA intron (ENSMUSG00000020268.14, intron 2 of 7) protein_coding-intron (ENSMUSG00000020268.14, intron 1 of 3) 8606 ENSMUSG00000020268.14 ENSMUSG00000020268 ENSMUST00000135853 Lyrm7 protein_coding Interval_148119 chr7 79345929 79347381 + 0 NA intron (ENSMUSG00000039202.12, intron 5 of 10) protein_coding-intron (ENSMUSG00000039202.12, intron 5 of 10) 6090 ENSMUSG00000089453.1 ENSMUSG00000089453 ENSMUST00000158828 Gm24224 misc_RNA Interval_173012 chrX 62630839 62631122 + 0 NA Intergenic Intergenic -15745 ENSMUSG00000081001.1 ENSMUSG00000081001 ENSMUST00000121396 Gm14678 processed_pseudogene Interval_169926 chr9 103004554 103004824 + 0 NA intron (ENSMUSG00000032548.14, intron 1 of 3) protein_coding-intron (ENSMUSG00000032548.14, intron 1 of 3) -3465 ENSMUSG00000032548.14 ENSMUSG00000032548 ENSMUST00000188664 Slco2a1 protein_coding Interval_107339 chr3 105981585 105981816 + 0 NA intron (ENSMUSG00000074340.9, intron 6 of 7) protein_coding-intron (ENSMUSG00000074340.9, intron 9 of 10) 4409 ENSMUSG00000074340.9 ENSMUSG00000074340 ENSMUST00000092878 Ovgp1 protein_coding Interval_140202 chr6 115515357 115515596 + 0 NA Intergenic Intergenic 21424 ENSMUSG00000107704.1 ENSMUSG00000107704 ENSMUST00000203752 Gm36355 lincRNA Interval_27073 chr11 62693094 62693876 + 0 NA Intergenic Intergenic -3733 ENSMUSG00000081852.1 ENSMUSG00000081852 ENSMUST00000119536 Gm12281 processed_pseudogene Interval_131716 chr5 139469236 139470305 + 0 NA Intergenic Intergenic -9243 ENSMUSG00000053553.11 ENSMUSG00000053553 ENSMUST00000197512 3110082I17Rik protein_coding Interval_90853 chr2 32971359 32971720 + 0 NA Intergenic Intergenic 8248 ENSMUSG00000065124.1 ENSMUSG00000065124 ENSMUST00000083190 Snora65 snoRNA Interval_126087 chr5 77287137 77289479 + 0 NA Intergenic Intergenic 15551 ENSMUSG00000093061.1 ENSMUSG00000093061 ENSMUST00000175320 Mir5098 miRNA Interval_133545 chr6 6347522 6347938 + 0 NA intron (ENSMUSG00000093482.8, intron 3 of 3) lincRNA-intron (ENSMUSG00000093482.8, intron 3 of 3) 4537 ENSMUSG00000097900.1 ENSMUSG00000097900 ENSMUST00000181363 Gm8652 processed_pseudogene Interval_4857 chr1 80299340 80300000 + 0 NA intron (ENSMUSG00000004364.14, intron 3 of 5) protein_coding-intron (ENSMUSG00000004364.14, intron 3 of 15) -23257 ENSMUSG00000103076.1 ENSMUSG00000103076 ENSMUST00000192839 Gm37902 TEC Interval_21777 chr11 4294887 4295498 + 0 NA Intergenic Intergenic 9732 ENSMUSG00000085512.1 ENSMUSG00000085512 ENSMUST00000127224 Gm11958 lincRNA Interval_115343 chr4 97590618 97590862 + 0 NA intron (ENSMUSG00000048747.14, intron 1 of 2) protein_coding-intron (ENSMUSG00000048747.14, intron 3 of 5) -33670 ENSMUSG00000082683.1 ENSMUSG00000082683 ENSMUST00000118008 Gm12697 processed_pseudogene Interval_172952 chrX 57503434 57503965 + 0 NA promoter-TSS (ENSMUSG00000036357.5) protein_coding-promoter-TSS (ENSMUSG00000036357.5) 58 ENSMUSG00000036357.5 ENSMUSG00000036357 ENSMUST00000057645 Gpr101 protein_coding Interval_119339 chr4 136968957 136970063 + 0 NA Intergenic Intergenic -12694 ENSMUSG00000028661.8 ENSMUSG00000028661 ENSMUST00000030420 Epha8 protein_coding Interval_82110 chr18 67797872 67798223 + 0 NA intron (ENSMUSG00000118134.1, intron 1 of 3) antisense-intron (ENSMUSG00000118134.1, intron 1 of 3) 1896 ENSMUSG00000118134.1 ENSMUSG00000118134 ENSMUST00000237968 4930549G23Rik antisense Interval_34456 chr12 4294916 4295993 + 0 NA TTS (ENSMUSG00000020647.10) protein_coding-TTS (ENSMUSG00000020647.10) 49046 ENSMUSG00000020647.10 ENSMUSG00000020647 ENSMUST00000219715 Ncoa1 protein_coding Interval_130960 chr5 134275320 134276065 + 0 NA promoter-TSS (ENSMUSG00000060261.15) protein_coding-promoter-TSS (ENSMUSG00000060261.15) -4956 ENSMUSG00000107000.1 ENSMUSG00000107000 ENSMUST00000201715 Gm43481 TEC Interval_122066 chr5 15903403 15905241 + 0 NA Intergenic Intergenic -3835 ENSMUSG00000105310.1 ENSMUSG00000105310 ENSMUST00000197410 Gm42451 processed_pseudogene Interval_22297 chr11 8596745 8596993 + 0 NA intron (ENSMUSG00000020422.14, intron 3 of 30) protein_coding-intron (ENSMUSG00000020422.14, intron 3 of 30) 67812 ENSMUSG00000020422.14 ENSMUSG00000020422 ENSMUST00000134823 Tns3 protein_coding Interval_11532 chr1 182504337 182504562 + 0 NA intron (ENSMUSG00000026509.15, intron 2 of 20) protein_coding-intron (ENSMUSG00000026509.15, intron 2 of 20) 10293 ENSMUSG00000104415.1 ENSMUSG00000104415 ENSMUST00000192742 Gm37069 TEC Interval_127092 chr5 100222449 100222659 + 0 NA intron (ENSMUSG00000085915.1, intron 4 of 4) unprocessed_pseudogene-intron (ENSMUSG00000085915.1, intron 4 of 4) 11846 ENSMUSG00000100157.6 ENSMUSG00000100157 ENSMUST00000188902 2310034O05Rik lincRNA Interval_81813 chr18 64946931 64947859 + 0 NA intron (ENSMUSG00000024589.18, intron 1 of 29) protein_coding-intron (ENSMUSG00000024589.18, intron 1 of 29) 53780 ENSMUSG00000117895.1 ENSMUSG00000117895 ENSMUST00000237218 Gm50368 antisense Interval_58784 chr15 38057618 38059134 + 0 NA promoter-TSS (ENSMUSG00000065852.1) snoRNA-promoter-TSS (ENSMUSG00000065852.1) 91 ENSMUSG00000065852.1 ENSMUSG00000065852 ENSMUST00000083918 Gm22353 snoRNA Interval_117790 chr4 126241722 126242447 + 0 NA exon (ENSMUSG00000028849.17, exon 2 of 17) protein_coding-exon (ENSMUSG00000028849.17, exon 2 of 17) -8536 ENSMUSG00000028849.17 ENSMUSG00000028849 ENSMUST00000131579 Map7d1 protein_coding Interval_158024 chr8 78115996 78116230 + 0 NA Intergenic Intergenic 8153 ENSMUSG00000109948.1 ENSMUSG00000109948 ENSMUST00000210236 Gm45288 processed_pseudogene Interval_105454 chr3 86761451 86762254 + 0 NA intron (ENSMUSG00000028080.16, intron 14 of 17) protein_coding-intron (ENSMUSG00000028080.16, intron 53 of 56) 16801 ENSMUSG00000104108.1 ENSMUSG00000104108 ENSMUST00000194490 Gm37876 antisense Interval_407 chr1 4947107 4947739 + 0 NA intron (ENSMUSG00000002459.17, intron 1 of 3) protein_coding-intron (ENSMUSG00000002459.17, intron 1 of 4) -6713 ENSMUSG00000102653.1 ENSMUSG00000102653 ENSMUST00000194114 Gm37079 TEC Interval_38937 chr12 83967381 83967690 + 0 NA intron (ENSMUSG00000090843.2, intron 8 of 14) protein_coding-intron (ENSMUSG00000090843.2, intron 8 of 14) -16682 ENSMUSG00000096953.2 ENSMUSG00000096953 ENSMUST00000181399 Gm26571 antisense Interval_170961 chr9 113300809 113301396 + 0 NA intron (ENSMUSG00000111022.1, intron 2 of 3) lincRNA-intron (ENSMUSG00000111022.1, intron 2 of 3) 13395 ENSMUSG00000111022.1 ENSMUSG00000111022 ENSMUST00000217623 Gm36367 lincRNA Interval_34377 chr12 3699121 3699505 + 0 NA TTS (ENSMUSG00000077830.1) miRNA-TTS (ENSMUSG00000077830.1) 135 ENSMUSG00000077830.1 ENSMUSG00000077830 ENSMUST00000104640 Gm26050 miRNA Interval_90252 chr2 29329821 29331165 + 0 NA Intergenic Intergenic 65966 ENSMUSG00000086994.1 ENSMUSG00000086994 ENSMUST00000153600 Gm13402 antisense Interval_171110 chr9 114581545 114582349 + 0 NA Intergenic Intergenic -17578 ENSMUSG00000079259.2 ENSMUSG00000079259 ENSMUST00000111816 Trim71 protein_coding Interval_167550 chr9 70403700 70404231 + 0 NA Intergenic Intergenic 1788 ENSMUSG00000093763.1 ENSMUSG00000093763 ENSMUST00000176002 Mir5626 miRNA Interval_123162 chr5 30207242 30207913 + 0 NA Intergenic Intergenic -2990 ENSMUSG00000067642.11 ENSMUSG00000067642 ENSMUST00000135322 Adgrf3 protein_coding Interval_114449 chr4 77866773 77866955 + 0 NA intron (ENSMUSG00000028399.18, intron 2 of 6) protein_coding-intron (ENSMUSG00000028399.18, intron 2 of 14) -345091 ENSMUSG00000092492.1 ENSMUSG00000092492 ENSMUST00000173049 B230208B08Rik processed_transcript Interval_78179 chr18 9858792 9859772 + 0 NA intron (ENSMUSG00000036103.9, intron 6 of 9) protein_coding-intron (ENSMUSG00000036103.9, intron 7 of 10) -32163 ENSMUSG00000092816.1 ENSMUSG00000092816 ENSMUST00000175075 Gm23637 miRNA Interval_60297 chr15 72608125 72608600 + 0 NA intron (ENSMUSG00000047921.17, intron 20 of 21) protein_coding-intron (ENSMUSG00000047921.17, intron 20 of 21) 20079 ENSMUSG00000116088.1 ENSMUSG00000116088 ENSMUST00000230426 Gm49460 antisense Interval_24605 chr11 35138876 35139368 + 0 NA intron (ENSMUSG00000056427.10, intron 1 of 35) protein_coding-intron (ENSMUSG00000056427.10, intron 1 of 35) -32507 ENSMUSG00000056427.10 ENSMUSG00000056427 ENSMUST00000124438 Slit3 protein_coding Interval_148814 chr7 88425804 88426004 + 0 NA Intergenic Intergenic -4490 ENSMUSG00000030559.8 ENSMUSG00000030559 ENSMUST00000208478 Rab38 protein_coding Interval_150120 chr7 106984932 106985415 + 0 NA Intergenic Intergenic 4493 ENSMUSG00000109246.2 ENSMUSG00000109246 ENSMUST00000207690 Olfr712-ps1 unprocessed_pseudogene Interval_115916 chr4 106249197 106249771 + 0 NA intron (ENSMUSG00000086249.1, intron 2 of 4) processed_transcript-intron (ENSMUSG00000086249.1, intron 2 of 4) -7547 ENSMUSG00000082958.1 ENSMUSG00000082958 ENSMUST00000120932 Gm12731 processed_pseudogene Interval_146368 chr7 45558406 45559392 + 0 NA promoter-TSS (ENSMUSG00000030825.19) protein_coding-promoter-TSS (ENSMUSG00000030825.19) -307 ENSMUSG00000030825.19 ENSMUSG00000030825 ENSMUST00000209551 Hsd17b14 protein_coding Interval_43681 chr13 34961030 34961429 + 0 NA intron (ENSMUSG00000021416.11, intron 1 of 8) protein_coding-intron (ENSMUSG00000021416.11, intron 1 of 8) 1831 ENSMUSG00000113066.1 ENSMUSG00000113066 ENSMUST00000222890 Gm47217 unprocessed_pseudogene Interval_34929 chr12 13603830 13604103 + 0 NA Intergenic Intergenic 23680 ENSMUSG00000113666.1 ENSMUSG00000113666 ENSMUST00000221862 Gm35725 lincRNA Interval_93655 chr2 75636874 75637150 + 0 NA Intergenic Intergenic -3630 ENSMUSG00000082152.1 ENSMUSG00000082152 ENSMUST00000119695 Gm13655 processed_pseudogene Interval_128058 chr5 110565305 110565934 + 0 NA intron (ENSMUSG00000033316.14, intron 1 of 10) protein_coding-intron (ENSMUSG00000033316.14, intron 1 of 10) -37902 ENSMUSG00000033316.14 ENSMUSG00000033316 ENSMUST00000165856 Galnt9 protein_coding Interval_161177 chr8 118170102 118170530 + 0 NA Intergenic Intergenic 49362 ENSMUSG00000065028.1 ENSMUSG00000065028 ENSMUST00000083094 Gm25200 snoRNA Interval_94786 chr2 94297097 94297313 + 0 NA Intergenic Intergenic -32597 ENSMUSG00000075020.6 ENSMUSG00000075020 ENSMUST00000134563 Mir670hg lincRNA Interval_156144 chr8 45109592 45109904 + 0 NA promoter-TSS (ENSMUSG00000110260.1) lincRNA-promoter-TSS (ENSMUSG00000110260.1) 24581 ENSMUSG00000054764.9 ENSMUSG00000054764 ENSMUST00000209488 Mtnr1a protein_coding Interval_94844 chr2 96585594 96585908 + 0 NA intron (ENSMUSG00000050587.14, intron 2 of 7) protein_coding-intron (ENSMUSG00000050587.14, intron 2 of 6) -413873 ENSMUSG00000091288.1 ENSMUSG00000091288 ENSMUST00000171924 Gm17075 processed_pseudogene Interval_173938 chrX 113871297 113871692 + 0 NA Intergenic Intergenic 6960 ENSMUSG00000087765.1 ENSMUSG00000087765 ENSMUST00000157140 Gm23985 snoRNA Interval_109465 chr3 142707991 142709248 + 0 NA intron (ENSMUSG00000040213.13, intron 2 of 13) protein_coding-intron (ENSMUSG00000040213.13, intron 2 of 13) 7533 ENSMUSG00000040213.13 ENSMUSG00000040213 ENSMUST00000128096 Kyat3 protein_coding Interval_110496 chr3 159714129 159714473 + 0 NA Intergenic Intergenic 115083 ENSMUSG00000028174.12 ENSMUSG00000028174 ENSMUST00000029824 Rpe65 protein_coding Interval_63657 chr15 102612953 102613244 + 0 NA intron (ENSMUSG00000099083.7, intron 1 of 4) protein_coding-intron (ENSMUSG00000099083.7, intron 1 of 10) 11969 ENSMUSG00000052414.9 ENSMUSG00000052414 ENSMUST00000184772 Gm28047 protein_coding Interval_130921 chr5 134063476 134064887 + 0 NA Intergenic Intergenic 27270 ENSMUSG00000106800.1 ENSMUSG00000106800 ENSMUST00000202497 1700030N18Rik TEC Interval_4307 chr1 72601321 72602357 + 0 NA intron (ENSMUSG00000039354.16, intron 9 of 16) protein_coding-intron (ENSMUSG00000039354.16, intron 9 of 16) 18588 ENSMUSG00000039354.16 ENSMUSG00000039354 ENSMUST00000126832 Smarcal1 protein_coding Interval_95368 chr2 106973635 106974707 + 0 NA intron (ENSMUSG00000027122.15, intron 1 of 1) protein_coding-intron (ENSMUSG00000027122.15, intron 1 of 4) -4894 ENSMUSG00000027122.15 ENSMUSG00000027122 ENSMUST00000124598 Arl14ep protein_coding Interval_135558 chr6 40407686 40407890 + 0 NA exon (ENSMUSG00000037172.14, exon 8 of 8) protein_coding-exon (ENSMUSG00000037172.14, exon 8 of 8) 23620 ENSMUSG00000037172.14 ENSMUSG00000037172 ENSMUST00000200994 Dennd11 protein_coding Interval_95838 chr2 117127997 117128197 + 0 NA intron (ENSMUSG00000027351.14, intron 1 of 4) protein_coding-intron (ENSMUSG00000027351.14, intron 1 of 6) 6459 ENSMUSG00000027351.14 ENSMUSG00000027351 ENSMUST00000110901 Spred1 protein_coding Interval_170063 chr9 104146186 104147301 + 0 NA Intergenic Intergenic 23068 ENSMUSG00000099773.1 ENSMUSG00000099773 ENSMUST00000185927 Hmgb1-rs16 processed_pseudogene Interval_96694 chr2 127222416 127222592 + 0 NA exon (ENSMUSG00000003660.10, exon 15 of 15) protein_coding-exon (ENSMUSG00000003660.10, exon 15 of 15) -14250 ENSMUSG00000044145.2 ENSMUSG00000044145 ENSMUST00000150956 1810024B03Rik protein_coding Interval_43230 chr13 26113277 26114713 + 0 NA Intergenic Intergenic -80706 ENSMUSG00000084358.1 ENSMUSG00000084358 ENSMUST00000119264 Gm11352 processed_pseudogene Interval_165731 chr9 51977374 51978000 + 0 NA Intergenic Intergenic 25594 ENSMUSG00000098076.1 ENSMUSG00000098076 ENSMUST00000182467 Gm6981 processed_pseudogene Interval_58209 chr15 30770401 30770744 + 0 NA intron (ENSMUSG00000022240.10, intron 1 of 2) protein_coding-intron (ENSMUSG00000022240.10, intron 9 of 22) -143951 ENSMUSG00000115337.1 ENSMUSG00000115337 ENSMUST00000228499 4930570B17Rik antisense Interval_112676 chr4 44003615 44005215 + 0 NA promoter-TSS (ENSMUSG00000028478.18) protein_coding-promoter-TSS (ENSMUSG00000028478.18) -8228 ENSMUSG00000028478.18 ENSMUSG00000028478 ENSMUST00000107845 Clta protein_coding Interval_45168 chr13 52909292 52909548 + 0 NA TTS (ENSMUSG00000021460.17) protein_coding-TTS (ENSMUSG00000021460.17) 3526 ENSMUSG00000021460.17 ENSMUSG00000021460 ENSMUST00000151469 Auh protein_coding Interval_141515 chr6 128823497 128823708 + 0 NA intron (ENSMUSG00000079298.9, intron 1 of 5) protein_coding-intron (ENSMUSG00000079298.9, intron 1 of 5) 2617 ENSMUSG00000107872.2 ENSMUSG00000107872 ENSMUST00000204677 Gm44511 protein_coding Interval_165293 chr9 46067762 46068164 + 0 NA intron (ENSMUSG00000034135.15, intron 1 of 24) protein_coding-intron (ENSMUSG00000034135.15, intron 1 of 22) -55167 ENSMUSG00000034135.15 ENSMUSG00000034135 ENSMUST00000138338 Sik3 protein_coding Interval_105696 chr3 88620623 88622608 + 0 NA promoter-TSS (ENSMUSG00000028059.16) protein_coding-promoter-TSS (ENSMUSG00000028059.16) -554 ENSMUSG00000093390.1 ENSMUSG00000093390 ENSMUST00000177314 Gm20652 antisense Interval_37836 chr12 72392874 72394060 + 0 NA intron (ENSMUSG00000021087.18, intron 1 of 8) protein_coding-intron (ENSMUSG00000021087.18, intron 1 of 8) -48568 ENSMUSG00000021090.16 ENSMUSG00000021090 ENSMUST00000221282 Lrrc9 protein_coding Interval_49647 chr13 113777059 113777551 + 0 NA Intergenic Intergenic 12690 ENSMUSG00000114781.1 ENSMUSG00000114781 ENSMUST00000225989 Gm47463 processed_pseudogene Interval_114755 chr4 84771624 84772220 + 0 NA Intergenic Intergenic 30447 ENSMUSG00000086413.1 ENSMUSG00000086413 ENSMUST00000141637 Gm12415 lincRNA Interval_89912 chr2 26408272 26410119 + 0 NA promoter-TSS (ENSMUSG00000026925.16) protein_coding-promoter-TSS (ENSMUSG00000026925.16) -8719 ENSMUSG00000026925.16 ENSMUSG00000026925 ENSMUST00000144011 Inpp5e protein_coding Interval_140634 chr6 120229798 120231069 + 0 NA intron (ENSMUSG00000041372.10, intron 3 of 19) protein_coding-intron (ENSMUSG00000041372.10, intron 3 of 19) 64126 ENSMUSG00000041372.10 ENSMUSG00000041372 ENSMUST00000212457 B4galnt3 protein_coding Interval_69170 chr16 91097672 91098455 + 0 NA Intergenic Intergenic -2941 ENSMUSG00000039851.11 ENSMUSG00000039851 ENSMUST00000146047 4932438H23Rik protein_coding Interval_128056 chr5 110550960 110551224 + 0 NA intron (ENSMUSG00000033316.14, intron 1 of 10) protein_coding-intron (ENSMUSG00000033316.14, intron 1 of 10) 36148 ENSMUSG00000048215.14 ENSMUSG00000048215 ENSMUST00000129007 A630023P12Rik lincRNA Interval_170723 chr9 110342423 110342778 + 0 NA intron (ENSMUSG00000032485.14, intron 1 of 3) protein_coding-intron (ENSMUSG00000032485.14, intron 1 of 22) -12036 ENSMUSG00000106123.1 ENSMUSG00000106123 ENSMUST00000196065 Gm42638 TEC Interval_89798 chr2 25517064 25517377 + 0 NA TTS (ENSMUSG00000026942.13) protein_coding-TTS (ENSMUSG00000026942.13) 13313 ENSMUSG00000015095.12 ENSMUSG00000015095 ENSMUST00000148845 Fbxw5 protein_coding Interval_29934 chr11 87860747 87862899 + 0 NA promoter-TSS (ENSMUSG00000034121.12) protein_coding-promoter-TSS (ENSMUSG00000034121.12) 8158 ENSMUSG00000034121.12 ENSMUSG00000034121 ENSMUST00000135369 Mks1 protein_coding Interval_19231 chr10 95648220 95648655 + 0 NA Intergenic Intergenic 13954 ENSMUSG00000112538.1 ENSMUSG00000112538 ENSMUST00000218479 Gm47667 lincRNA Interval_110436 chr3 158094640 158094914 + 0 NA intron (ENSMUSG00000028176.13, intron 24 of 24) protein_coding-intron (ENSMUSG00000028176.13, intron 27 of 27) -18665 ENSMUSG00000104597.1 ENSMUSG00000104597 ENSMUST00000200255 B230334C09Rik antisense Interval_66303 chr16 33018487 33019802 + 0 NA intron (ENSMUSG00000035578.16, intron 7 of 7) processed_transcript-intron (ENSMUSG00000078489.2, intron 1 of 1) 17241 ENSMUSG00000070225.1 ENSMUSG00000070225 ENSMUST00000093713 n-R5s33 rRNA Interval_171977 chr9 123123477 123124157 + 0 NA intron (ENSMUSG00000025785.5, intron 3 of 5) protein_coding-intron (ENSMUSG00000025785.5, intron 3 of 7) 10575 ENSMUSG00000025785.5 ENSMUSG00000025785 ENSMUST00000214741 Exosc7 protein_coding Interval_28278 chr11 74855189 74855708 + 0 NA intron (ENSMUSG00000038351.14, intron 17 of 23) protein_coding-intron (ENSMUSG00000038351.14, intron 16 of 22) 12746 ENSMUSG00000098317.1 ENSMUSG00000098317 ENSMUST00000184562 Mir6926 miRNA Interval_138752 chr6 91638127 91638736 + 0 NA Intergenic Intergenic 39199 ENSMUSG00000108308.1 ENSMUSG00000108308 ENSMUST00000205533 Gm45218 lincRNA Interval_71079 chr17 17738600 17740696 + 0 NA Intergenic Intergenic 35901 ENSMUSG00000092120.2 ENSMUSG00000092120 ENSMUST00000232113 Vmn2r90 protein_coding Interval_152023 chr7 128344790 128345517 + 0 NA Intergenic Intergenic 4686 ENSMUSG00000108608.1 ENSMUSG00000108608 ENSMUST00000205523 Gm6916 transcribed_processed_pseudogene Interval_73059 chr17 34536179 34537525 + 0 NA intron (ENSMUSG00000061728.5, intron 7 of 8) unprocessed_pseudogene-intron (ENSMUSG00000061728.5, intron 7 of 8) 10799 ENSMUSG00000061728.5 ENSMUSG00000061728 ENSMUST00000023469 Btnl7-ps unprocessed_pseudogene Interval_82341 chr18 71322904 71323168 + 0 NA intron (ENSMUSG00000060534.16, intron 24 of 28) protein_coding-intron (ENSMUSG00000060534.16, intron 24 of 28) -415385 ENSMUSG00000118271.1 ENSMUSG00000118271 ENSMUST00000236972 Gm50262 processed_pseudogene Interval_10363 chr1 169980662 169980883 + 0 NA intron (ENSMUSG00000026674.9, intron 17 of 17) protein_coding-intron (ENSMUSG00000026674.9, intron 17 of 17) 11320 ENSMUSG00000097503.2 ENSMUSG00000097503 ENSMUST00000193930 3110045C21Rik antisense Interval_88262 chr19 61303186 61303452 + 0 NA Intergenic Intergenic 1961 ENSMUSG00000118197.1 ENSMUSG00000118197 ENSMUST00000237261 Gm20762 processed_pseudogene Interval_118540 chr4 132363638 132364477 + 0 NA intron (ENSMUSG00000066043.13, intron 4 of 6) protein_coding-intron (ENSMUSG00000066043.13, intron 9 of 12) -10394 ENSMUSG00000085241.7 ENSMUSG00000085241 ENSMUST00000136127 Snhg3 processed_transcript Interval_171099 chr9 114525342 114528817 + 0 NA intron (ENSMUSG00000079259.2, intron 1 of 3) protein_coding-intron (ENSMUSG00000079259.2, intron 1 of 3) 11382 ENSMUSG00000097821.2 ENSMUSG00000097821 ENSMUST00000238379 C130032M10Rik antisense Interval_22306 chr11 8641502 8642441 + 0 NA intron (ENSMUSG00000020422.14, intron 1 of 30) protein_coding-intron (ENSMUSG00000020422.14, intron 1 of 30) 22710 ENSMUSG00000020422.14 ENSMUSG00000020422 ENSMUST00000134823 Tns3 protein_coding Interval_149587 chr7 99853365 99853879 + 0 NA intron (ENSMUSG00000035227.7, intron 1 of 5) protein_coding-intron (ENSMUSG00000035227.7, intron 1 of 4) 5289 ENSMUSG00000035227.7 ENSMUSG00000035227 ENSMUST00000208562 Spcs2 protein_coding Interval_171785 chr9 121107366 121108850 + 0 NA exon (ENSMUSG00000040936.15, exon 1 of 8) protein_coding-exon (ENSMUSG00000040936.15, exon 1 of 8) -134234 ENSMUSG00000084706.1 ENSMUSG00000084706 ENSMUST00000122757 Gm22987 misc_RNA Interval_42625 chr13 17183554 17184198 + 0 NA intron (ENSMUSG00000055137.7, intron 12 of 13) protein_coding-intron (ENSMUSG00000055137.7, intron 12 of 13) -22145 ENSMUSG00000094754.1 ENSMUSG00000094754 ENSMUST00000178071 Gm25020 snRNA Interval_150067 chr7 105568695 105569825 + 0 NA promoter-TSS (ENSMUSG00000037032.16) protein_coding-promoter-TSS (ENSMUSG00000037032.16) -2117 ENSMUSG00000037032.16 ENSMUSG00000037032 ENSMUST00000188726 Apbb1 protein_coding Interval_142351 chr6 140789980 140791169 + 0 NA Intergenic Intergenic -5870 ENSMUSG00000108039.1 ENSMUSG00000108039 ENSMUST00000203498 Gm43925 processed_pseudogene Interval_81133 chr18 54718602 54719912 + 0 NA Intergenic Intergenic -46875 ENSMUSG00000118307.1 ENSMUSG00000118307 ENSMUST00000235369 Gm5821 processed_pseudogene Interval_12612 chr10 3907857 3909007 + 0 NA intron (ENSMUSG00000040624.18, intron 3 of 15) protein_coding-intron (ENSMUSG00000040624.18, intron 3 of 15) 26445 ENSMUSG00000089392.1 ENSMUSG00000089392 ENSMUST00000158767 Gm23023 rRNA Interval_47177 chr13 77134765 77135900 + 0 NA promoter-TSS (ENSMUSG00000071252.6) protein_coding-promoter-TSS (ENSMUSG00000071252.6) 133 ENSMUSG00000021597.16 ENSMUSG00000021597 ENSMUST00000162320 Slf1 protein_coding Interval_69400 chr16 92708346 92709161 + 0 NA intron (ENSMUSG00000022952.17, intron 1 of 1) protein_coding-intron (ENSMUSG00000022952.17, intron 2 of 7) 95939 ENSMUSG00000097139.3 ENSMUSG00000097139 ENSMUST00000180989 Gm26626 antisense Interval_79414 chr18 31737211 31737652 + 0 NA Intergenic Intergenic -1284 ENSMUSG00000117533.1 ENSMUSG00000117533 ENSMUST00000234849 Gm50060 processed_pseudogene Interval_147624 chr7 70304312 70304869 + 0 NA intron (ENSMUSG00000109097.1, intron 1 of 3) lincRNA-intron (ENSMUSG00000109097.1, intron 1 of 3) 33253 ENSMUSG00000109097.1 ENSMUSG00000109097 ENSMUST00000207682 Gm29683 lincRNA Interval_113458 chr4 55125694 55125891 + 0 NA Intergenic Intergenic 9229 ENSMUSG00000082704.1 ENSMUSG00000082704 ENSMUST00000120116 Gm12515 processed_pseudogene Interval_79092 chr18 24466465 24467972 + 0 NA Intergenic Intergenic -3632 ENSMUSG00000024273.8 ENSMUSG00000024273 ENSMUST00000097646 2700062C07Rik protein_coding Interval_81763 chr18 64500625 64501354 + 0 NA TTS (ENSMUSG00000024587.10) protein_coding-TTS (ENSMUSG00000024587.10) 10888 ENSMUSG00000024587.10 ENSMUSG00000024587 ENSMUST00000237027 Nars protein_coding Interval_139020 chr6 94230182 94231906 + 0 NA intron (ENSMUSG00000045095.16, intron 2 of 2) protein_coding-intron (ENSMUSG00000045095.16, intron 1 of 21) 92990 ENSMUSG00000107545.1 ENSMUSG00000107545 ENSMUST00000204466 Gm44307 processed_pseudogene Interval_102341 chr3 22039500 22039998 + 0 NA Intergenic Intergenic 18552 ENSMUSG00000106527.1 ENSMUSG00000106527 ENSMUST00000200422 Gm43671 processed_pseudogene Interval_161593 chr8 121443145 121443964 + 0 NA intron (ENSMUSG00000092329.1, intron 1 of 15) protein_coding-intron (ENSMUSG00000092329.1, intron 1 of 15) 8574 ENSMUSG00000097438.1 ENSMUSG00000097438 ENSMUST00000181666 Gm26784 lincRNA Interval_145244 chr7 30866779 30867019 + 0 NA intron (ENSMUSG00000030577.14, intron 9 of 9) protein_coding-intron (ENSMUSG00000030577.14, intron 13 of 13) -5335 ENSMUSG00000044453.5 ENSMUSG00000044453 ENSMUST00000052700 Ffar1 protein_coding Interval_27794 chr11 70028973 70030009 + 0 NA promoter-TSS (ENSMUSG00000020886.17) protein_coding-promoter-TSS (ENSMUSG00000020886.17) 2492 ENSMUSG00000020886.17 ENSMUSG00000020886 ENSMUST00000131497 Dlg4 protein_coding Interval_125310 chr5 66123223 66123476 + 0 NA intron (ENSMUSG00000070780.11, intron 1 of 2) protein_coding-intron (ENSMUSG00000070780.11, intron 1 of 5) 27607 ENSMUSG00000070780.11 ENSMUSG00000070780 ENSMUST00000201670 Rbm47 protein_coding Interval_13564 chr10 19714915 19715140 + 0 NA intron (ENSMUSG00000020007.4, intron 1 of 7) protein_coding-intron (ENSMUSG00000020007.4, intron 1 of 6) 2393 ENSMUSG00000020007.4 ENSMUSG00000020007 ENSMUST00000217389 Il20ra protein_coding Interval_98426 chr2 152287112 152287394 + 0 NA Intergenic Intergenic -6927 ENSMUSG00000027465.13 ENSMUSG00000027465 ENSMUST00000141373 Tbc1d20 protein_coding Interval_158075 chr8 78573259 78573519 + 0 NA intron (ENSMUSG00000031684.11, intron 4 of 10) protein_coding-intron (ENSMUSG00000031684.11, intron 4 of 11) -30905 ENSMUSG00000110244.1 ENSMUSG00000110244 ENSMUST00000211775 Gm2253 processed_pseudogene Interval_106561 chr3 97234510 97235325 + 0 NA intron (ENSMUSG00000038256.15, intron 1 of 3) protein_coding-intron (ENSMUSG00000038256.15, intron 1 of 3) -27438 ENSMUSG00000106536.1 ENSMUSG00000106536 ENSMUST00000199972 Gm42508 TEC Interval_62434 chr15 92666616 92666950 + 0 NA intron (ENSMUSG00000036218.16, intron 1 of 7) protein_coding-intron (ENSMUSG00000036218.16, intron 1 of 7) 39172 ENSMUSG00000115858.1 ENSMUSG00000115858 ENSMUST00000230757 4930588J15Rik antisense Interval_58044 chr15 27234700 27235556 + 0 NA Intergenic Intergenic -132811 ENSMUSG00000115554.1 ENSMUSG00000115554 ENSMUST00000227785 Gm19111 processed_pseudogene Interval_54889 chr14 76010262 76011432 + 0 NA promoter-TSS (ENSMUSG00000067995.4) protein_coding-promoter-TSS (ENSMUSG00000067995.4) 18 ENSMUSG00000067995.4 ENSMUSG00000067995 ENSMUST00000088922 Gtf2f2 protein_coding Interval_100141 chr2 167304809 167305246 + 0 NA exon (ENSMUSG00000017929.13, exon 7 of 9) protein_coding-exon (ENSMUSG00000017929.13, exon 7 of 9) 8828 ENSMUSG00000017929.13 ENSMUSG00000017929 ENSMUST00000133557 B4galt5 protein_coding Interval_77149 chr17 86924900 86925125 + 0 NA Intergenic Intergenic -3961 ENSMUSG00000117457.1 ENSMUSG00000117457 ENSMUST00000234807 Gm50011 lincRNA Interval_17351 chr10 76030599 76031193 + 0 NA Intergenic Intergenic -1754 ENSMUSG00000049764.8 ENSMUSG00000049764 ENSMUST00000061617 Zfp280b protein_coding Interval_24669 chr11 35784707 35784963 + 0 NA intron (ENSMUSG00000018846.8, intron 6 of 6) protein_coding-intron (ENSMUSG00000018846.8, intron 6 of 6) 2439 ENSMUSG00000065553.1 ENSMUSG00000065553 ENSMUST00000083619 Mir103-1 miRNA Interval_138368 chr6 87671794 87672750 + 0 NA promoter-TSS (ENSMUSG00000030051.10) protein_coding-promoter-TSS (ENSMUSG00000030051.10) -143 ENSMUSG00000030051.10 ENSMUSG00000030051 ENSMUST00000203776 Aplf protein_coding Interval_12191 chr1 190745151 190745785 + 0 NA intron (ENSMUSG00000089872.10, intron 8 of 12) protein_coding-intron (ENSMUSG00000089872.10, intron 8 of 12) 151142 ENSMUSG00000103963.1 ENSMUSG00000103963 ENSMUST00000191893 Gm30932 lincRNA Interval_88636 chr2 8020322 8020557 + 0 NA Intergenic Intergenic 127426 ENSMUSG00000083269.1 ENSMUSG00000083269 ENSMUST00000118295 Gm13254 processed_pseudogene Interval_221 KV575234.1 273946 275849 + 0 NA NA NA NA NA Interval_34447 chr12 4216266 4216757 + 0 NA promoter-TSS (ENSMUSG00000020652.17) protein_coding-promoter-TSS (ENSMUSG00000020652.17) -5 ENSMUSG00000020652.17 ENSMUSG00000020652 ENSMUST00000126017 Cenpo protein_coding Interval_154097 chr8 12656665 12657829 + 0 NA intron (ENSMUSG00000000759.14, intron 3 of 4) protein_coding-intron (ENSMUSG00000000759.14, intron 5 of 21) -8848 ENSMUSG00000088641.1 ENSMUSG00000088641 ENSMUST00000158016 Gm26483 miRNA Interval_4469 chr1 74389852 74392582 + 0 NA promoter-TSS (ENSMUSG00000026176.13) protein_coding-promoter-TSS (ENSMUSG00000026176.13) -945 ENSMUSG00000026176.13 ENSMUSG00000026176 ENSMUST00000152659 Ctdsp1 protein_coding Interval_92591 chr2 60962052 60963637 + 0 NA exon (ENSMUSG00000026970.16, exon 1 of 14) protein_coding-exon (ENSMUSG00000026970.16, exon 1 of 14) 12307 ENSMUSG00000075325.3 ENSMUSG00000075325 ENSMUST00000146034 Gm13582 lincRNA Interval_87097 chr19 46085200 46087181 + 0 NA TTS (ENSMUSG00000015176.11) protein_coding-TTS (ENSMUSG00000015176.11) 10201 ENSMUSG00000015176.11 ENSMUSG00000015176 ENSMUST00000224490 Nolc1 protein_coding Interval_134145 chr6 21894581 21894797 + 0 NA Intergenic Intergenic -36511 ENSMUSG00000106871.1 ENSMUSG00000106871 ENSMUST00000200819 Gm3289 lincRNA Interval_41314 chr12 112656659 112657650 + 0 NA promoter-TSS (ENSMUSG00000001729.14) protein_coding-promoter-TSS (ENSMUSG00000001729.14) -181 ENSMUSG00000001729.14 ENSMUSG00000001729 ENSMUST00000127902 Akt1 protein_coding Interval_53804 chr14 61974000 61974364 + 0 NA Intergenic Intergenic -38137 ENSMUSG00000114368.1 ENSMUSG00000114368 ENSMUST00000224570 Gm47953 processed_pseudogene Interval_145852 chr7 40419782 40420136 + 0 NA intron (ENSMUSG00000100650.1, intron 2 of 2) lincRNA-intron (ENSMUSG00000100650.1, intron 2 of 2) 49281 ENSMUSG00000100650.1 ENSMUSG00000100650 ENSMUST00000187799 Gm28807 lincRNA Interval_119736 chr4 139596636 139598156 + 0 NA intron (ENSMUSG00000041025.15, intron 1 of 8) protein_coding-intron (ENSMUSG00000041025.15, intron 3 of 10) -5790 ENSMUSG00000094439.1 ENSMUSG00000094439 ENSMUST00000178644 Gm21969 protein_coding Interval_32425 chr11 107473293 107473707 + 0 NA Intergenic Intergenic -6028 ENSMUSG00000020720.13 ENSMUSG00000020720 ENSMUST00000106750 Psmd12 protein_coding Interval_123739 chr5 35056309 35057528 + 0 NA promoter-TSS (ENSMUSG00000044716.12) protein_coding-promoter-TSS (ENSMUSG00000044716.12) 12569 ENSMUSG00000029102.9 ENSMUSG00000029102 ENSMUST00000202168 Hgfac protein_coding Interval_70766 chr17 14252684 14253274 + 0 NA intron (ENSMUSG00000117254.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000117254.1, intron 1 of 2) 3128 ENSMUSG00000117254.1 ENSMUSG00000117254 ENSMUST00000233271 Gm34567 lincRNA Interval_147837 chr7 74012333 74014331 + 0 NA intron (ENSMUSG00000025789.9, intron 1 of 5) protein_coding-intron (ENSMUSG00000025789.9, intron 1 of 5) 358 ENSMUSG00000025789.9 ENSMUSG00000025789 ENSMUST00000191970 St8sia2 protein_coding Interval_132772 chr5 147766098 147766667 + 0 NA Intergenic Intergenic 20866 ENSMUSG00000106845.1 ENSMUSG00000106845 ENSMUST00000202338 Gm43156 lincRNA Interval_4686 chr1 77177133 77177423 + 0 NA Intergenic Intergenic -30286 ENSMUSG00000102904.1 ENSMUSG00000102904 ENSMUST00000193479 Gm38265 TEC Interval_34825 chr12 12313360 12314996 + 0 NA intron (ENSMUSG00000020589.17, intron 3 of 12) protein_coding-intron (ENSMUSG00000020589.17, intron 2 of 11) 51995 ENSMUSG00000020589.17 ENSMUSG00000020589 ENSMUST00000222357 Fam49a protein_coding Interval_120547 chr4 149273066 149273338 + 0 NA intron (ENSMUSG00000063077.15, intron 5 of 49) protein_coding-intron (ENSMUSG00000063077.15, intron 5 of 20) 34490 ENSMUSG00000063077.15 ENSMUSG00000063077 ENSMUST00000132072 Kif1b protein_coding Interval_129733 chr5 122025260 122025536 + 0 NA promoter-TSS (ENSMUSG00000105795.1) antisense-promoter-TSS (ENSMUSG00000105795.1) 68 ENSMUSG00000105795.1 ENSMUSG00000105795 ENSMUST00000198001 Gm3970 antisense Interval_40968 chr12 110323187 110323487 + 0 NA Intergenic Intergenic -2048 ENSMUSG00000114183.1 ENSMUSG00000114183 ENSMUST00000222991 Gm47195 processed_pseudogene Interval_125009 chr5 63811893 63813078 + 0 NA promoter-TSS (ENSMUSG00000060512.7) protein_coding-promoter-TSS (ENSMUSG00000060512.7) 12023 ENSMUSG00000090061.9 ENSMUSG00000090061 ENSMUST00000162757 Nwd2 protein_coding Interval_53129 chr14 54612911 54614197 + 0 NA TTS (ENSMUSG00000022193.7) protein_coding-TTS (ENSMUSG00000022193.7) 3231 ENSMUSG00000076128.1 ENSMUSG00000076128 ENSMUST00000102174 Mir686 miRNA Interval_146522 chr7 46601282 46602424 + 0 NA intron (ENSMUSG00000030839.12, intron 8 of 11) protein_coding-intron (ENSMUSG00000030839.12, intron 8 of 10) 37951 ENSMUSG00000030839.12 ENSMUSG00000030839 ENSMUST00000137988 Sergef protein_coding Interval_128187 chr5 111593753 111594321 + 0 NA exon (ENSMUSG00000104833.1, exon 1 of 1) lincRNA-exon (ENSMUSG00000104833.1, exon 1 of 1) 421 ENSMUSG00000104833.1 ENSMUSG00000104833 ENSMUST00000198964 Gm42489 lincRNA Interval_121978 chr5 12894752 12895388 + 0 NA Intergenic Intergenic -45300 ENSMUSG00000094310.1 ENSMUSG00000094310 ENSMUST00000180047 Gm23243 miRNA Interval_54031 chr14 64626477 64627886 + 0 NA Intergenic Intergenic -25379 ENSMUSG00000060012.9 ENSMUSG00000060012 ENSMUST00000224677 Kif13b protein_coding Interval_47527 chr13 86380403 86380722 + 0 NA Intergenic Intergenic 144735 ENSMUSG00000098152.1 ENSMUSG00000098152 ENSMUST00000182392 Gm27025 processed_pseudogene Interval_136204 chr6 52026103 52027425 + 0 NA exon (ENSMUSG00000108244.1, exon 2 of 2) lincRNA-exon (ENSMUSG00000108244.1, exon 2 of 2) 14163 ENSMUSG00000108244.1 ENSMUSG00000108244 ENSMUST00000203453 Gm44077 lincRNA Interval_8137 chr1 135944726 135946309 + 0 NA Intergenic Intergenic -26375 ENSMUSG00000026413.12 ENSMUSG00000026413 ENSMUST00000132793 Pkp1 protein_coding Interval_84010 chr19 6084503 6085976 + 0 NA promoter-TSS (ENSMUSG00000024792.9) protein_coding-promoter-TSS (ENSMUSG00000024792.9) -283 ENSMUSG00000024792.9 ENSMUSG00000024792 ENSMUST00000159859 Zfpl1 protein_coding Interval_76638 chr17 83037096 83037861 + 0 NA intron (ENSMUSG00000117399.1, intron 2 of 3) processed_transcript-intron (ENSMUSG00000117399.1, intron 2 of 3) -31427 ENSMUSG00000100154.1 ENSMUSG00000100154 ENSMUST00000187700 Gm29052 lincRNA Interval_147426 chr7 66902877 66903972 + 0 NA intron (ENSMUSG00000058145.16, intron 5 of 8) protein_coding-intron (ENSMUSG00000058145.16, intron 4 of 22) 58494 ENSMUSG00000109079.1 ENSMUSG00000109079 ENSMUST00000207830 Gm44755 TEC Interval_39446 chr12 87449984 87450806 + 0 NA TTS (ENSMUSG00000021040.15) protein_coding-TTS (ENSMUSG00000021040.15) -6477 ENSMUSG00000079036.10 ENSMUSG00000079036 ENSMUST00000185301 Alkbh1 protein_coding Interval_52429 chr14 46287200 46287486 + 0 NA Intergenic Intergenic -93784 ENSMUSG00000079261.2 ENSMUSG00000079261 ENSMUST00000147092 Gm15217 protein_coding Interval_157854 chr8 74987323 74988065 + 0 NA Intergenic Intergenic -12175 ENSMUSG00000034518.14 ENSMUSG00000034518 ENSMUST00000129391 Hmgxb4 protein_coding Interval_6279 chr1 105252998 105253202 + 0 NA Intergenic Intergenic 8675 ENSMUSG00000099702.1 ENSMUSG00000099702 ENSMUST00000187431 Gm29013 unprocessed_pseudogene Interval_12205 chr1 190831758 190831988 + 0 NA intron (ENSMUSG00000089872.10, intron 1 of 3) protein_coding-intron (ENSMUSG00000089872.10, intron 8 of 14) 67844 ENSMUSG00000089872.10 ENSMUSG00000089872 ENSMUST00000159066 Rps6kc1 protein_coding Interval_167863 chr9 73136021 73136387 + 0 NA Intergenic Intergenic 3515 ENSMUSG00000103556.1 ENSMUSG00000103556 ENSMUST00000192321 Gm38215 TEC Interval_99905 chr2 165732607 165732837 + 0 NA intron (ENSMUSG00000017897.18, intron 4 of 6) protein_coding-intron (ENSMUSG00000017897.18, intron 9 of 15) -65865 ENSMUSG00000081758.1 ENSMUSG00000081758 ENSMUST00000118200 Gm11460 processed_pseudogene Interval_55116 chr14 78244908 78245483 + 0 NA Intergenic Intergenic 1116 ENSMUSG00000080402.1 ENSMUSG00000080402 ENSMUST00000116752 Gm23652 miRNA Interval_5778 chr1 91754846 91756026 + 0 NA Intergenic Intergenic -46034 ENSMUSG00000007805.4 ENSMUSG00000007805 ENSMUST00000186075 Twist2 protein_coding Interval_87133 chr19 46369242 46369463 + 0 NA intron (ENSMUSG00000025227.14, intron 6 of 7) protein_coding-intron (ENSMUSG00000025227.14, intron 6 of 8) 10316 ENSMUSG00000065204.1 ENSMUSG00000065204 ENSMUST00000083270 Gm24610 snoRNA Interval_1711 chr1 31937552 31938479 + 0 NA Intergenic Intergenic 201958 ENSMUSG00000082159.2 ENSMUSG00000082159 ENSMUST00000117896 Gm7910 processed_pseudogene Interval_162519 chr9 3573214 3574666 + 0 NA intron (ENSMUSG00000041624.10, intron 1 of 4) protein_coding-intron (ENSMUSG00000041624.10, intron 1 of 7) 41052 ENSMUSG00000041624.10 ENSMUSG00000041624 ENSMUST00000212705 Gucy1a2 protein_coding Interval_132895 chr5 148580310 148581506 + 0 NA Intergenic Intergenic -27047 ENSMUSG00000106899.1 ENSMUSG00000106899 ENSMUST00000202969 1700013A02Rik TEC Interval_84187 chr19 8618126 8618385 + 0 NA exon (ENSMUSG00000024650.5, exon 1 of 10) protein_coding-exon (ENSMUSG00000024650.5, exon 1 of 10) 216 ENSMUSG00000024650.5 ENSMUSG00000024650 ENSMUST00000010250 Slc22a6 protein_coding Interval_157846 chr8 74902775 74903087 + 0 NA Intergenic Intergenic 29391 ENSMUSG00000031621.9 ENSMUSG00000031621 ENSMUST00000174427 Isx protein_coding Interval_1585 chr1 28192250 28192514 + 0 NA Intergenic Intergenic 202472 ENSMUSG00000101372.1 ENSMUSG00000101372 ENSMUST00000189614 Gm19028 processed_pseudogene Interval_111967 chr4 32881705 32882225 + 0 NA intron (ENSMUSG00000040183.13, intron 1 of 16) protein_coding-intron (ENSMUSG00000040183.13, intron 1 of 16) -10721 ENSMUSG00000083565.1 ENSMUSG00000083565 ENSMUST00000119904 Gm11941 processed_pseudogene Interval_96522 chr2 125263209 125264029 + 0 NA Intergenic Intergenic -10945 ENSMUSG00000085797.1 ENSMUSG00000085797 ENSMUST00000146845 A530010F05Rik antisense Interval_30693 chr11 95939774 95940676 + 0 NA Intergenic Intergenic 19123 ENSMUSG00000088854.1 ENSMUSG00000088854 ENSMUST00000158229 Gm24725 snRNA Interval_37067 chr12 57258529 57258767 + 0 NA intron (ENSMUSG00000047022.18, intron 1 of 6) protein_coding-intron (ENSMUSG00000047022.18, intron 1 of 10) 14664 ENSMUSG00000078982.3 ENSMUSG00000078982 ENSMUST00000140773 Gm11025 processed_pseudogene Interval_129776 chr5 122274521 122275457 + 0 NA Intergenic Intergenic -10574 ENSMUSG00000038593.18 ENSMUSG00000038593 ENSMUST00000177148 Tctn1 protein_coding Interval_123148 chr5 30113846 30115067 + 0 NA exon (ENSMUSG00000044576.6, exon 4 of 6) protein_coding-exon (ENSMUSG00000044576.6, exon 4 of 6) -8370 ENSMUSG00000086815.4 ENSMUSG00000086815 ENSMUST00000127749 3110082J24Rik protein_coding Interval_13301 chr10 14340603 14341059 + 0 NA Intergenic Intergenic 13420 ENSMUSG00000112225.1 ENSMUSG00000112225 ENSMUST00000218527 Gm48854 lincRNA Interval_163715 chr9 24818286 24819526 + 0 NA Intergenic Intergenic 8439 ENSMUSG00000111507.1 ENSMUSG00000111507 ENSMUST00000214455 Amd-ps6 processed_pseudogene Interval_157867 chr8 75079156 75079573 + 0 NA intron (ENSMUSG00000110429.1, intron 1 of 1) processed_pseudogene-intron (ENSMUSG00000110429.1, intron 1 of 1) 223 ENSMUSG00000110429.1 ENSMUSG00000110429 ENSMUST00000212025 Gm2059 processed_pseudogene Interval_24141 chr11 30678400 30678844 + 0 NA Intergenic Intergenic 27279 ENSMUSG00000083655.1 ENSMUSG00000083655 ENSMUST00000118660 Gm12099 processed_pseudogene Interval_131921 chr5 140794513 140794871 + 0 NA intron (ENSMUSG00000000149.10, intron 1 of 2) protein_coding-intron (ENSMUSG00000000149.10, intron 1 of 3) 35465 ENSMUSG00000000149.10 ENSMUSG00000000149 ENSMUST00000198447 Gna12 protein_coding Interval_167312 chr9 67236793 67237185 + 0 NA promoter-TSS (ENSMUSG00000076379.2) miRNA-promoter-TSS (ENSMUSG00000076379.2) -263 ENSMUSG00000076379.2 ENSMUSG00000076379 ENSMUST00000102424 Mir190a miRNA Interval_134844 chr6 32226351 32227046 + 0 NA intron (ENSMUSG00000029765.12, intron 9 of 31) protein_coding-intron (ENSMUSG00000029765.12, intron 9 of 31) -1499 ENSMUSG00000029765.12 ENSMUSG00000029765 ENSMUST00000200732 Plxna4 protein_coding Interval_70596 chr17 12210640 12210973 + 0 NA TTS (ENSMUSG00000023827.8) protein_coding-TTS (ENSMUSG00000023827.8) 20885 ENSMUSG00000063911.4 ENSMUSG00000063911 ENSMUST00000074412 Tdgf1-ps2 processed_pseudogene Interval_163998 chr9 30633635 30634490 + 0 NA Intergenic Intergenic -1475 ENSMUSG00000111413.1 ENSMUSG00000111413 ENSMUST00000216883 Gm47716 lincRNA Interval_146152 chr7 44384034 44385009 + 0 NA promoter-TSS (ENSMUSG00000030731.13) protein_coding-promoter-TSS (ENSMUSG00000030731.13) 394 ENSMUSG00000030731.13 ENSMUSG00000030731 ENSMUST00000120262 Syt3 protein_coding Interval_169564 chr9 99158210 99158610 + 0 NA Intergenic Intergenic -18485 ENSMUSG00000032462.14 ENSMUSG00000032462 ENSMUST00000124723 Pik3cb protein_coding Interval_61325 chr15 80852072 80852758 + 0 NA intron (ENSMUSG00000047888.10, intron 1 of 17) protein_coding-intron (ENSMUSG00000047888.10, intron 4 of 24) -70649 ENSMUSG00000047888.10 ENSMUSG00000047888 ENSMUST00000228525 Tnrc6b protein_coding Interval_41509 chr12 115511061 115511267 + 0 NA Intergenic Intergenic -3133 ENSMUSG00000094088.2 ENSMUSG00000094088 ENSMUST00000103535 Ighv1-64 IG_V_gene Interval_165321 chr9 46290745 46290941 + 0 NA promoter-TSS (ENSMUSG00000032077.5) protein_coding-promoter-TSS (ENSMUSG00000032077.5) -505 ENSMUSG00000032077.5 ENSMUSG00000032077 ENSMUST00000213932 Bud13 protein_coding Interval_5225 chr1 86549439 86551159 + 0 NA intron (ENSMUSG00000026239.14, intron 1 of 3) protein_coding-intron (ENSMUSG00000026239.14, intron 1 of 4) 23562 ENSMUSG00000026238.14 ENSMUSG00000026238 ENSMUST00000188533 Ptma protein_coding Interval_95586 chr2 112500889 112501651 + 0 NA TTS (ENSMUSG00000080622.1) snoRNA-TTS (ENSMUSG00000080622.1) 401 ENSMUSG00000080622.1 ENSMUSG00000080622 ENSMUST00000116972 Gm22676 snoRNA Interval_156443 chr8 48228268 48229314 + 0 NA exon (ENSMUSG00000031561.16, exon 29 of 29) protein_coding-exon (ENSMUSG00000031561.16, exon 29 of 29) 42194 ENSMUSG00000110480.1 ENSMUSG00000110480 ENSMUST00000212653 Gm32842 processed_pseudogene Interval_166098 chr9 56593835 56594797 + 0 NA Intergenic Intergenic -12377 ENSMUSG00000097870.2 ENSMUSG00000097870 ENSMUST00000181927 Gm26868 lincRNA Interval_76022 chr17 74431155 74432187 + 0 NA intron (ENSMUSG00000039193.9, intron 7 of 7) protein_coding-intron (ENSMUSG00000039193.9, intron 8 of 8) 6968 ENSMUSG00000117187.1 ENSMUSG00000117187 ENSMUST00000233026 Gm4708 processed_pseudogene Interval_122891 chr5 26984751 26985721 + 0 NA intron (ENSMUSG00000061576.15, intron 1 of 25) protein_coding-intron (ENSMUSG00000061576.15, intron 1 of 25) 22385 ENSMUSG00000081970.1 ENSMUSG00000081970 ENSMUST00000120811 Gm16057 processed_pseudogene Interval_17128 chr10 71499300 71499920 + 0 NA Intergenic Intergenic -14090 ENSMUSG00000112108.1 ENSMUSG00000112108 ENSMUST00000219700 4930551I15Rik lincRNA Interval_1292 chr1 19233824 19235619 + 0 NA TTS (ENSMUSG00000025927.13) protein_coding-TTS (ENSMUSG00000025927.13) -8004 ENSMUSG00000100538.1 ENSMUSG00000100538 ENSMUST00000189218 Gm28340 lincRNA Interval_94162 chr2 84774416 84775510 + 0 NA exon (ENSMUSG00000023224.12, exon 1 of 2) protein_coding-exon (ENSMUSG00000023224.12, exon 1 of 2) 165 ENSMUSG00000023224.12 ENSMUSG00000023224 ENSMUST00000131456 Serping1 protein_coding Interval_97598 chr2 140271813 140272378 + 0 NA intron (ENSMUSG00000074764.11, intron 5 of 19) protein_coding-intron (ENSMUSG00000074764.11, intron 5 of 19) 24733 ENSMUSG00000074764.11 ENSMUSG00000074764 ENSMUST00000120133 Sel1l2 protein_coding Interval_93349 chr2 72203553 72204686 + 0 NA intron (ENSMUSG00000049044.16, intron 2 of 3) protein_coding-intron (ENSMUSG00000049044.16, intron 12 of 27) 5320 ENSMUSG00000049044.16 ENSMUSG00000049044 ENSMUST00000146970 Rapgef4 protein_coding Interval_56524 chr14 119877560 119877802 + 0 NA Intergenic Intergenic 78703 ENSMUSG00000115639.1 ENSMUSG00000115639 ENSMUST00000228885 4930404K13Rik sense_intronic Interval_49501 chr13 112473965 112474549 + 0 NA promoter-TSS (ENSMUSG00000021756.12) protein_coding-promoter-TSS (ENSMUSG00000021756.12) -789 ENSMUSG00000021756.12 ENSMUSG00000021756 ENSMUST00000184949 Il6st protein_coding Interval_27452 chr11 67896901 67898191 + 0 NA intron (ENSMUSG00000020905.11, intron 5 of 5) protein_coding-intron (ENSMUSG00000020905.11, intron 4 of 14) 23663 ENSMUSG00000020905.11 ENSMUSG00000020905 ENSMUST00000152120 Usp43 protein_coding Interval_66703 chr16 36476886 36477418 + 0 NA Intergenic Intergenic -3311 ENSMUSG00000116917.1 ENSMUSG00000116917 ENSMUST00000231458 Gm49653 TEC Interval_16601 chr10 64922705 64922921 + 0 NA intron (ENSMUSG00000060843.11, intron 15 of 17) protein_coding-intron (ENSMUSG00000060843.11, intron 14 of 16) 197554 ENSMUSG00000100528.1 ENSMUSG00000100528 ENSMUST00000187710 Gm28881 lincRNA Interval_3225 chr1 54993471 54993821 + 0 NA intron (ENSMUSG00000025982.13, intron 22 of 24) protein_coding-intron (ENSMUSG00000025982.13, intron 22 of 24) 33748 ENSMUSG00000025982.13 ENSMUSG00000025982 ENSMUST00000188419 Sf3b1 protein_coding Interval_15669 chr10 53348362 53348879 + 0 NA exon (ENSMUSG00000038594.9, exon 3 of 13) protein_coding-exon (ENSMUSG00000038594.9, exon 3 of 13) -4386 ENSMUSG00000112734.1 ENSMUSG00000112734 ENSMUST00000220401 Gm47644 sense_intronic Interval_144022 chr7 19018988 19019222 + 0 NA intron (ENSMUSG00000040891.6, intron 1 of 1) protein_coding-intron (ENSMUSG00000040891.6, intron 1 of 1) 4433 ENSMUSG00000040891.6 ENSMUSG00000040891 ENSMUST00000036018 Foxa3 protein_coding Interval_9911 chr1 164040567 164041253 + 0 NA Intergenic Intergenic -7324 ENSMUSG00000026582.6 ENSMUSG00000026582 ENSMUST00000027874 Sele protein_coding Interval_130908 chr5 133842556 133842886 + 0 NA promoter-TSS (ENSMUSG00000106067.1) processed_pseudogene-promoter-TSS (ENSMUSG00000106067.1) -202 ENSMUSG00000106067.1 ENSMUSG00000106067 ENSMUST00000198842 Gm7902 processed_pseudogene Interval_154405 chr8 15760715 15761125 + 0 NA Intergenic Intergenic -116744 ENSMUSG00000109757.1 ENSMUSG00000109757 ENSMUST00000211639 Gm7128 processed_pseudogene Interval_155762 chr8 37027252 37027541 + 0 NA TTS (ENSMUSG00000110158.1) processed_pseudogene-TTS (ENSMUSG00000110158.1) 303 ENSMUSG00000110158.1 ENSMUSG00000110158 ENSMUST00000210775 Gm45690 processed_pseudogene Interval_56349 chr14 117951263 117952524 + 0 NA intron (ENSMUSG00000058571.11, intron 8 of 9) protein_coding-intron (ENSMUSG00000058571.11, intron 7 of 8) 1954 ENSMUSG00000098648.1 ENSMUSG00000098648 ENSMUST00000183564 Mir6239 miRNA Interval_110003 chr3 152418176 152418745 + 0 NA intron (ENSMUSG00000039068.16, intron 1 of 13) protein_coding-intron (ENSMUSG00000039068.16, intron 1 of 13) 22328 ENSMUSG00000039068.16 ENSMUSG00000039068 ENSMUST00000135044 Zzz3 protein_coding Interval_42263 chr13 11279477 11280120 + 0 NA Intergenic Intergenic 147100 ENSMUSG00000077618.1 ENSMUSG00000077618 ENSMUST00000104430 Gm25496 snoRNA Interval_43815 chr13 36981776 36982287 + 0 NA intron (ENSMUSG00000039109.16, intron 4 of 5) protein_coding-intron (ENSMUSG00000039109.16, intron 4 of 14) 18792 ENSMUSG00000114329.1 ENSMUSG00000114329 ENSMUST00000224527 Gm30489 antisense Interval_33581 chr11 117340801 117341796 + 0 NA intron (ENSMUSG00000059248.13, intron 1 of 8) protein_coding-intron (ENSMUSG00000059248.13, intron 2 of 10) 8870 ENSMUSG00000059248.13 ENSMUSG00000059248 ENSMUST00000129387 Septin9 protein_coding Interval_146108 chr7 43970639 43970860 + 0 NA intron (ENSMUSG00000063133.2, intron 4 of 4) protein_coding-intron (ENSMUSG00000063133.2, intron 4 of 4) 3539 ENSMUSG00000108746.1 ENSMUSG00000108746 ENSMUST00000206796 Gm45198 unprocessed_pseudogene Interval_72632 chr17 31198250 31199031 + 0 NA promoter-TSS (ENSMUSG00000024034.13) protein_coding-promoter-TSS (ENSMUSG00000024034.13) -469 ENSMUSG00000024034.13 ENSMUSG00000024034 ENSMUST00000236793 Tmprss3 protein_coding Interval_121691 chr5 5342730 5343611 + 0 NA intron (ENSMUSG00000028926.15, intron 2 of 2) protein_coding-intron (ENSMUSG00000028926.15, intron 2 of 14) -31547 ENSMUSG00000104867.1 ENSMUSG00000104867 ENSMUST00000198817 Gm43728 sense_intronic Interval_32188 chr11 106007768 106008325 + 0 NA promoter-TSS (ENSMUSG00000001901.15) protein_coding-promoter-TSS (ENSMUSG00000001901.15) -157 ENSMUSG00000001901.15 ENSMUSG00000001901 ENSMUST00000140695 Kcnh6 protein_coding Interval_100881 chr2 173089427 173090587 + 0 NA Intergenic Intergenic 29518 ENSMUSG00000070495.11 ENSMUSG00000070495 ENSMUST00000179693 Ctcfl protein_coding Interval_115245 chr4 94785591 94786549 + 0 NA intron (ENSMUSG00000006386.15, intron 2 of 22) protein_coding-intron (ENSMUSG00000006386.15, intron 2 of 22) -18773 ENSMUSG00000006386.15 ENSMUSG00000006386 ENSMUST00000131958 Tek protein_coding Interval_147115 chr7 63345739 63346726 + 0 NA intron (ENSMUSG00000097682.1, intron 9 of 9) lincRNA-intron (ENSMUSG00000097682.1, intron 9 of 9) 98297 ENSMUSG00000097682.1 ENSMUSG00000097682 ENSMUST00000181327 4930554H23Rik lincRNA Interval_54431 chr14 69712102 69712948 + 0 NA Intergenic Intergenic -4972 ENSMUSG00000034194.18 ENSMUSG00000034194 ENSMUST00000147609 R3hcc1 protein_coding Interval_5005 chr1 84145013 84145210 + 0 NA intron (ENSMUSG00000045658.16, intron 4 of 4) protein_coding-intron (ENSMUSG00000045658.16, intron 2 of 2) -10601 ENSMUSG00000102750.1 ENSMUSG00000102750 ENSMUST00000193393 Gm37058 TEC Interval_29598 chr11 85261112 85262416 + 0 NA Intergenic Intergenic -26634 ENSMUSG00000018481.9 ENSMUSG00000018481 ENSMUST00000018625 Appbp2 protein_coding Interval_4319 chr1 72712439 72713080 + 0 NA TTS (ENSMUSG00000046330.10) protein_coding-TTS (ENSMUSG00000046330.10) 1445 ENSMUSG00000046330.10 ENSMUSG00000046330 ENSMUST00000211963 Rpl37a protein_coding Interval_151827 chr7 126941505 126942075 + 0 NA promoter-TSS (ENSMUSG00000095334.2) processed_transcript-promoter-TSS (ENSMUSG00000095334.2) -354 ENSMUSG00000095334.2 ENSMUSG00000095334 ENSMUST00000123117 Gm21984 processed_transcript Interval_166444 chr9 59539071 59540131 + 0 NA promoter-TSS (ENSMUSG00000025232.8) protein_coding-promoter-TSS (ENSMUSG00000025232.8) 61 ENSMUSG00000025232.8 ENSMUSG00000025232 ENSMUST00000026262 Hexa protein_coding Interval_86184 chr19 37609907 37610713 + 0 NA intron (ENSMUSG00000053799.8, intron 19 of 22) protein_coding-intron (ENSMUSG00000053799.8, intron 18 of 21) -75271 ENSMUSG00000062432.4 ENSMUSG00000062432 ENSMUST00000073391 Cyp26c1 protein_coding Interval_138635 chr6 90606570 90608407 + 0 NA intron (ENSMUSG00000030089.15, intron 1 of 10) protein_coding-intron (ENSMUSG00000030089.15, intron 1 of 10) 2763 ENSMUSG00000030089.15 ENSMUSG00000030089 ENSMUST00000032177 Slc41a3 protein_coding Interval_62129 chr15 87623745 87625916 + 0 NA promoter-TSS (ENSMUSG00000054863.9) protein_coding-promoter-TSS (ENSMUSG00000054863.9) 80531 ENSMUSG00000054863.9 ENSMUSG00000054863 ENSMUST00000068088 Tafa5 protein_coding Interval_35887 chr12 31618946 31620625 + 0 NA intron (ENSMUSG00000020650.15, intron 5 of 7) protein_coding-intron (ENSMUSG00000020650.15, intron 4 of 6) -18036 ENSMUSG00000020650.15 ENSMUSG00000020650 ENSMUST00000218543 Bcap29 protein_coding Interval_169790 chr9 101413380 101413756 + 0 NA Intergenic Intergenic -20458 ENSMUSG00000096166.1 ENSMUSG00000096166 ENSMUST00000179807 Gm24638 snoRNA Interval_84160 chr19 7638838 7639170 + 0 NA intron (ENSMUSG00000024973.17, intron 5 of 5) protein_coding-intron (ENSMUSG00000024973.17, intron 5 of 5) 26435 ENSMUSG00000024973.17 ENSMUSG00000024973 ENSMUST00000148558 Plaat5 protein_coding Interval_38468 chr12 79235650 79235964 + 0 NA TTS (ENSMUSG00000066440.5) protein_coding-TTS (ENSMUSG00000066440.5) 8604 ENSMUSG00000066440.5 ENSMUSG00000066440 ENSMUST00000219571 Zfyve26 protein_coding Interval_159965 chr8 105457173 105458305 + 0 NA intron (ENSMUSG00000054320.16, intron 11 of 13) protein_coding-intron (ENSMUSG00000054320.16, intron 8 of 10) 11671 ENSMUSG00000014846.12 ENSMUSG00000014846 ENSMUST00000176419 Tppp3 protein_coding Interval_147246 chr7 65047284 65047454 + 0 NA intron (ENSMUSG00000030518.17, intron 1 of 3) protein_coding-intron (ENSMUSG00000030518.17, intron 1 of 9) -90793 ENSMUSG00000093212.1 ENSMUSG00000093212 ENSMUST00000175471 Gm25249 miRNA Interval_78307 chr18 11883275 11884570 + 0 NA intron (ENSMUSG00000040957.15, intron 2 of 8) protein_coding-intron (ENSMUSG00000040957.15, intron 2 of 8) -29209 ENSMUSG00000117430.1 ENSMUSG00000117430 ENSMUST00000234828 Gm49968 TEC Interval_120858 chr4 151088662 151090197 + 0 NA promoter-TSS (ENSMUSG00000078491.2) protein_coding-promoter-TSS (ENSMUSG00000078491.2) -141 ENSMUSG00000078491.2 ENSMUSG00000078491 ENSMUST00000105667 Gm13090 protein_coding Interval_100260 chr2 168025504 168026115 + 0 NA Intergenic Intergenic 15280 ENSMUSG00000086411.1 ENSMUSG00000086411 ENSMUST00000142374 Gm14236 antisense Interval_6179 chr1 99771839 99772793 + 0 NA promoter-TSS (ENSMUSG00000067028.11) protein_coding-promoter-TSS (ENSMUSG00000067028.11) 18709 ENSMUSG00000082431.3 ENSMUSG00000082431 ENSMUST00000117372 Prdx2-ps1 processed_pseudogene Interval_71407 chr17 23574026 23574351 + 0 NA promoter-TSS (ENSMUSG00000115842.1) lincRNA-promoter-TSS (ENSMUSG00000115842.1) -761 ENSMUSG00000115842.1 ENSMUSG00000115842 ENSMUST00000226550 Gm49092 lincRNA Interval_171397 chr9 117399808 117401108 + 0 NA intron (ENSMUSG00000039607.17, intron 1 of 14) protein_coding-intron (ENSMUSG00000039607.17, intron 1 of 14) -2521 ENSMUSG00000092504.1 ENSMUSG00000092504 ENSMUST00000173358 Gm20396 processed_pseudogene Interval_164616 chr9 40098270 40098510 + 0 NA exon (ENSMUSG00000045812.5, exon 2 of 2) protein_coding-exon (ENSMUSG00000045812.5, exon 2 of 2) -4795 ENSMUSG00000044205.7 ENSMUSG00000044205 ENSMUST00000050996 Olfr983 protein_coding Interval_40052 chr12 100877349 100879260 + 0 NA exon (ENSMUSG00000047415.12, exon 3 of 3) protein_coding-exon (ENSMUSG00000047415.12, exon 3 of 3) -13865 ENSMUSG00000082604.3 ENSMUSG00000082604 ENSMUST00000117972 Gm8482 processed_pseudogene Interval_22697 chr11 13287571 13287882 + 0 NA Intergenic Intergenic 290060 ENSMUSG00000084055.1 ENSMUSG00000084055 ENSMUST00000117869 Gm12004 processed_pseudogene Interval_73940 chr17 45591807 45592096 + 0 NA intron (ENSMUSG00000023942.15, intron 1 of 3) protein_coding-intron (ENSMUSG00000023942.15, intron 2 of 12) 3551 ENSMUSG00000023942.15 ENSMUSG00000023942 ENSMUST00000168274 Slc29a1 protein_coding Interval_140970 chr6 123327627 123328348 + 0 NA intron (ENSMUSG00000091260.1, intron 3 of 5) protein_coding-intron (ENSMUSG00000091260.1, intron 3 of 5) 19654 ENSMUSG00000091260.1 ENSMUSG00000091260 ENSMUST00000073948 Vmn2r19 protein_coding Interval_105733 chr3 88992121 88992534 + 0 NA intron (ENSMUSG00000028053.13, intron 3 of 27) protein_coding-intron (ENSMUSG00000028053.13, intron 2 of 26) -21598 ENSMUSG00000095712.1 ENSMUSG00000095712 ENSMUST00000178517 Gm26465 snRNA Interval_49460 chr13 112226034 112226405 + 0 NA Intergenic Intergenic 7026 ENSMUSG00000104438.1 ENSMUSG00000104438 ENSMUST00000192356 Gm37427 TEC Interval_143905 chr7 17055753 17056906 + 0 NA exon (ENSMUSG00000004328.15, exon 2 of 15) protein_coding-exon (ENSMUSG00000004328.15, exon 2 of 15) -2205 ENSMUSG00000108807.1 ENSMUSG00000108807 ENSMUST00000206290 4833404L02Rik TEC Interval_103568 chr3 49809449 49809868 + 0 NA Intergenic Intergenic -28771 ENSMUSG00000102943.1 ENSMUSG00000102943 ENSMUST00000193230 Gm37550 processed_pseudogene Interval_56507 chr14 119450309 119450693 + 0 NA intron (ENSMUSG00000053465.6, intron 1 of 1) protein_coding-intron (ENSMUSG00000053465.6, intron 1 of 1) 172077 ENSMUSG00000115684.1 ENSMUSG00000115684 ENSMUST00000227446 Gm6087 processed_pseudogene Interval_148914 chr7 90016404 90017701 + 0 NA intron (ENSMUSG00000097585.2, intron 7 of 8) processed_transcript-intron (ENSMUSG00000097585.2, intron 7 of 8) -12108 ENSMUSG00000097585.2 ENSMUSG00000097585 ENSMUST00000208266 E230029C05Rik processed_transcript Interval_99295 chr2 158738593 158739314 + 0 NA intron (ENSMUSG00000037754.13, intron 1 of 8) protein_coding-intron (ENSMUSG00000037754.13, intron 2 of 10) -1185 ENSMUSG00000093040.1 ENSMUSG00000093040 ENSMUST00000175299 Gm26141 miRNA Interval_17213 chr10 75022720 75022991 + 0 NA exon (ENSMUSG00000009070.14, exon 5 of 5) protein_coding-exon (ENSMUSG00000009070.14, exon 5 of 5) 9698 ENSMUSG00000009070.14 ENSMUSG00000009070 ENSMUST00000159761 Rsph14 protein_coding Interval_168611 chr9 84132620 84133035 + 0 NA Intergenic Intergenic -55528 ENSMUSG00000077666.1 ENSMUSG00000077666 ENSMUST00000104478 Gm26146 snRNA Interval_133048 chr5 149506196 149506668 + 0 NA intron (ENSMUSG00000107132.1, intron 1 of 4) antisense-intron (ENSMUSG00000107132.1, intron 1 of 4) -3380 ENSMUSG00000106879.1 ENSMUSG00000106879 ENSMUST00000201267 Gm2566 processed_pseudogene Interval_166738 chr9 62348149 62348806 + 0 NA intron (ENSMUSG00000032249.14, intron 1 of 4) protein_coding-intron (ENSMUSG00000032249.14, intron 1 of 6) 6013 ENSMUSG00000032249.14 ENSMUSG00000032249 ENSMUST00000145679 Anp32a protein_coding Interval_91913 chr2 51273359 51274430 + 0 NA intron (ENSMUSG00000086349.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000086349.1, intron 1 of 2) 32063 ENSMUSG00000086349.1 ENSMUSG00000086349 ENSMUST00000139497 Gm13497 lincRNA Interval_162906 chr9 12692315 12692754 + 0 NA Intergenic Intergenic -87631 ENSMUSG00000089477.1 ENSMUSG00000089477 ENSMUST00000158852 Gm25365 rRNA Interval_98491 chr2 152764041 152764935 + 0 NA intron (ENSMUSG00000009876.13, intron 3 of 3) protein_coding-intron (ENSMUSG00000009876.13, intron 4 of 4) 8401 ENSMUSG00000093306.1 ENSMUSG00000093306 ENSMUST00000175565 Gm23802 miRNA Interval_109852 chr3 148960797 148961023 + 0 NA intron (ENSMUSG00000028184.12, intron 1 of 19) protein_coding-intron (ENSMUSG00000028184.12, intron 1 of 2) -28242 ENSMUSG00000104786.1 ENSMUSG00000104786 ENSMUST00000196445 Gm43573 antisense Interval_115604 chr4 101343748 101343926 + 0 NA Intergenic Intergenic 2480 ENSMUSG00000081621.1 ENSMUSG00000081621 ENSMUST00000119268 Gm12793 processed_pseudogene Interval_8386 chr1 138606816 138607306 + 0 NA intron (ENSMUSG00000026393.10, intron 1 of 9) protein_coding-intron (ENSMUSG00000026393.10, intron 1 of 7) 12643 ENSMUSG00000026393.10 ENSMUSG00000026393 ENSMUST00000191549 Nek7 protein_coding Interval_162836 chr9 10167234 10167429 + 0 NA intron (ENSMUSG00000039488.15, intron 4 of 24) protein_coding-intron (ENSMUSG00000039488.15, intron 2 of 22) 123256 ENSMUSG00000093959.1 ENSMUSG00000093959 ENSMUST00000178287 Gm24496 miRNA Interval_101684 chr3 8931121 8931353 + 0 NA TTS (ENSMUSG00000027506.15) protein_coding-TTS (ENSMUSG00000027506.15) -7319 ENSMUSG00000040269.5 ENSMUSG00000040269 ENSMUST00000042148 Mrps28 protein_coding Interval_73469 chr17 37656546 37656785 + 0 NA TTS (ENSMUSG00000095286.3) protein_coding-TTS (ENSMUSG00000095286.3) 7110 ENSMUSG00000095286.3 ENSMUSG00000095286 ENSMUST00000073636 Olfr117 protein_coding Interval_23886 chr11 27668047 27668536 + 0 NA Intergenic Intergenic -160191 ENSMUSG00000082243.1 ENSMUSG00000082243 ENSMUST00000122413 Gm3810 processed_pseudogene Interval_67583 chr16 51432358 51432640 + 0 NA Intergenic Intergenic -15551 ENSMUSG00000116855.1 ENSMUSG00000116855 ENSMUST00000232313 Gm49608 processed_pseudogene Interval_108820 chr3 131956017 131956252 + 0 NA intron (ENSMUSG00000105331.1, intron 1 of 3) lincRNA-intron (ENSMUSG00000105331.1, intron 1 of 3) 37875 ENSMUSG00000087877.1 ENSMUSG00000087877 ENSMUST00000157252 Gm26103 snRNA Interval_32124 chr11 105362796 105363768 + 0 NA promoter-TSS (ENSMUSG00000086487.1) processed_transcript-promoter-TSS (ENSMUSG00000086487.1) 30 ENSMUSG00000086487.1 ENSMUSG00000086487 ENSMUST00000153672 Gm11638 processed_transcript Interval_76819 chr17 84278021 84278293 + 0 NA intron (ENSMUSG00000024251.10, intron 14 of 14) protein_coding-intron (ENSMUSG00000024251.10, intron 29 of 37) 9590 ENSMUSG00000065732.1 ENSMUSG00000065732 ENSMUST00000083798 Gm24492 snRNA Interval_32580 chr11 108857223 108858449 + 0 NA intron (ENSMUSG00000020728.17, intron 23 of 24) protein_coding-intron (ENSMUSG00000020728.17, intron 26 of 27) 37503 ENSMUSG00000085811.1 ENSMUSG00000085811 ENSMUST00000143781 Cep112it sense_intronic Interval_113885 chr4 59572664 59573433 + 0 NA Intergenic Intergenic -21262 ENSMUSG00000028383.17 ENSMUSG00000028383 ENSMUST00000128792 Hsdl2 protein_coding Interval_63865 chr16 4074493 4074696 + 0 NA intron (ENSMUSG00000005981.11, intron 1 of 4) protein_coding-intron (ENSMUSG00000005981.11, intron 1 of 17) 3181 ENSMUSG00000005981.11 ENSMUSG00000005981 ENSMUST00000138594 Trap1 protein_coding Interval_49913 chr13 118200961 118201188 + 0 NA Intergenic Intergenic 153754 ENSMUSG00000114713.1 ENSMUSG00000114713 ENSMUST00000225643 Gm9633 processed_pseudogene Interval_159987 chr8 105604502 105607804 + 0 NA intron (ENSMUSG00000038604.9, intron 1 of 21) protein_coding-intron (ENSMUSG00000038604.9, intron 1 of 21) 898 ENSMUSG00000038604.9 ENSMUSG00000038604 ENSMUST00000043531 Ripor1 protein_coding Interval_85773 chr19 30836727 30837386 + 0 NA intron (ENSMUSG00000052920.16, intron 5 of 17) protein_coding-intron (ENSMUSG00000052920.16, intron 5 of 17) -106474 ENSMUSG00000052920.16 ENSMUSG00000052920 ENSMUST00000182685 Prkg1 protein_coding Interval_113328 chr4 53490224 53491644 + 0 NA intron (ENSMUSG00000028412.17, intron 2 of 3) protein_coding-intron (ENSMUSG00000028412.17, intron 2 of 15) 50263 ENSMUSG00000028412.17 ENSMUSG00000028412 ENSMUST00000133582 Slc44a1 protein_coding Interval_171336 chr9 116489372 116490036 + 0 NA Intergenic Intergenic 158536 ENSMUSG00000110752.1 ENSMUSG00000110752 ENSMUST00000217456 D730003K21Rik lincRNA Interval_94667 chr2 93170420 93170999 + 0 NA Intergenic Intergenic -16839 ENSMUSG00000068735.14 ENSMUSG00000068735 ENSMUST00000143164 Trp53i11 protein_coding Interval_56014 chr14 104359452 104360265 + 0 NA intron (ENSMUSG00000115424.1, intron 1 of 4) lincRNA-intron (ENSMUSG00000115424.1, intron 1 of 4) 99478 ENSMUSG00000115424.1 ENSMUSG00000115424 ENSMUST00000228613 D130079A08Rik lincRNA Interval_67061 chr16 42327857 42328225 + 0 NA intron (ENSMUSG00000047261.9, intron 1 of 2) protein_coding-intron (ENSMUSG00000047261.9, intron 1 of 2) -24572 ENSMUSG00000098300.1 ENSMUSG00000098300 ENSMUST00000184886 Mir6540 miRNA Interval_38764 chr12 82118339 82119017 + 0 NA Intergenic Intergenic -31790 ENSMUSG00000064714.1 ENSMUSG00000064714 ENSMUST00000082780 n-R5s62 rRNA Interval_112346 chr4 40733812 40734758 + 0 NA TTS (ENSMUSG00000028410.13) protein_coding-TTS (ENSMUSG00000028410.13) 11363 ENSMUSG00000028410.13 ENSMUSG00000028410 ENSMUST00000148976 Dnaja1 protein_coding Interval_79694 chr18 34572611 34573418 + 0 NA intron (ENSMUSG00000035984.14, intron 1 of 2) protein_coding-intron (ENSMUSG00000035984.14, intron 2 of 5) 6073 ENSMUSG00000035984.14 ENSMUSG00000035984 ENSMUST00000154342 Nme5 protein_coding Interval_13923 chr10 24677635 24678258 + 0 NA exon (ENSMUSG00000037370.13, exon 3 of 25) protein_coding-exon (ENSMUSG00000037370.13, exon 3 of 25) 34051 ENSMUSG00000037370.13 ENSMUSG00000037370 ENSMUST00000142974 Enpp1 protein_coding Interval_70645 chr17 12768846 12770360 + 0 NA promoter-TSS (ENSMUSG00000023830.14) protein_coding-promoter-TSS (ENSMUSG00000023830.14) -1028 ENSMUSG00000089525.1 ENSMUSG00000089525 ENSMUST00000158900 Gm23833 misc_RNA Interval_23812 chr11 26508728 26509017 + 0 NA intron (ENSMUSG00000064090.14, intron 6 of 11) protein_coding-intron (ENSMUSG00000064090.14, intron 7 of 12) -84354 ENSMUSG00000068314.5 ENSMUSG00000068314 ENSMUST00000089614 Gm6899 TEC Interval_171579 chr9 119334419 119334807 + 0 NA intron (ENSMUSG00000070280.13, intron 1 of 10) protein_coding-intron (ENSMUSG00000070280.13, intron 1 of 10) 5389 ENSMUSG00000032508.8 ENSMUSG00000032508 ENSMUST00000139870 Myd88 protein_coding Interval_161364 chr8 119967357 119967717 + 0 NA intron (ENSMUSG00000092329.1, intron 1 of 15) protein_coding-intron (ENSMUSG00000092329.1, intron 1 of 15) 21137 ENSMUSG00000031826.20 ENSMUSG00000031826 ENSMUST00000139648 Usp10 protein_coding Interval_13313 chr10 14582883 14584482 + 0 NA Intergenic Intergenic -3254 ENSMUSG00000112490.1 ENSMUSG00000112490 ENSMUST00000217881 Gm48068 processed_pseudogene Interval_133178 chr5 150358638 150359501 + 0 NA exon (ENSMUSG00000056602.12, exon 10 of 61) protein_coding-exon (ENSMUSG00000056602.12, exon 10 of 61) -59628 ENSMUSG00000106719.1 ENSMUSG00000106719 ENSMUST00000201397 Gm42556 antisense Interval_110318 chr3 156768475 156768654 + 0 NA intron (ENSMUSG00000040037.13, intron 1 of 6) protein_coding-intron (ENSMUSG00000040037.13, intron 1 of 6) 31024 ENSMUSG00000105290.1 ENSMUSG00000105290 ENSMUST00000199492 Gm43528 TEC Interval_134176 chr6 22367516 22367825 + 0 NA Intergenic Intergenic -23757 ENSMUSG00000029672.16 ENSMUSG00000029672 ENSMUST00000168965 Fam3c protein_coding Interval_50260 chr14 11510373 11511188 + 0 NA intron (ENSMUSG00000114849.1, intron 2 of 2) lincRNA-intron (ENSMUSG00000114849.1, intron 2 of 2) 9990 ENSMUSG00000114849.1 ENSMUSG00000114849 ENSMUST00000224543 Gm48595 lincRNA Interval_82851 chr18 77492758 77494137 + 0 NA intron (ENSMUSG00000025427.15, intron 1 of 4) protein_coding-intron (ENSMUSG00000025427.15, intron 1 of 7) -19993 ENSMUSG00000117855.1 ENSMUSG00000117855 ENSMUST00000236419 Gm50197 processed_pseudogene Interval_53290 chr14 55822558 55824584 + 0 NA intron (ENSMUSG00000023411.12, intron 1 of 2) protein_coding-intron (ENSMUSG00000023411.12, intron 1 of 2) -5898 ENSMUSG00000023411.12 ENSMUSG00000023411 ENSMUST00000226869 Nfatc4 protein_coding Interval_80134 chr18 37777784 37777982 + 0 NA intron (ENSMUSG00000102428.1, intron 1 of 3) protein_coding-intron (ENSMUSG00000103088.1, intron 1 of 3) 12110 ENSMUSG00000102428.1 ENSMUSG00000102428 ENSMUST00000193045 Pcdhga12 protein_coding Interval_2751 chr1 44167743 44168489 + 0 NA TTS (ENSMUSG00000026048.16) protein_coding-TTS (ENSMUSG00000026048.16) 20372 ENSMUSG00000026048.16 ENSMUSG00000026048 ENSMUST00000155862 Ercc5 protein_coding Interval_131623 chr5 138875098 138875910 + 0 NA Intergenic Intergenic 55424 ENSMUSG00000094504.3 ENSMUSG00000094504 ENSMUST00000179205 Gm5294 protein_coding Interval_88434 chr2 5037521 5038226 + 0 NA promoter-TSS (ENSMUSG00000026672.11) protein_coding-promoter-TSS (ENSMUSG00000026672.11) 593 ENSMUSG00000086430.1 ENSMUSG00000086430 ENSMUST00000145585 4930551O13Rik antisense Interval_112268 chr4 39449780 39450227 + 0 NA promoter-TSS (ENSMUSG00000028287.4) protein_coding-promoter-TSS (ENSMUSG00000028287.4) 246 ENSMUSG00000090839.1 ENSMUSG00000090839 ENSMUST00000169881 Gm17094 antisense Interval_113211 chr4 50153704 50154098 + 0 NA Intergenic Intergenic -102498 ENSMUSG00000081120.1 ENSMUSG00000081120 ENSMUST00000119387 Gm12458 processed_pseudogene Interval_49976 chr13 119232857 119233315 + 0 NA Intergenic Intergenic 36518 ENSMUSG00000105411.1 ENSMUSG00000105411 ENSMUST00000199467 Gm44488 miRNA Interval_17565 chr10 77798028 77799084 + 0 NA exon (ENSMUSG00000096380.1, exon 1 of 1) protein_coding-exon (ENSMUSG00000096380.1, exon 1 of 1) 577 ENSMUSG00000096380.1 ENSMUSG00000096380 ENSMUST00000178581 Gm19668 protein_coding Interval_155629 chr8 35293501 35293963 + 0 NA Intergenic Intergenic -48253 ENSMUSG00000109688.1 ENSMUSG00000109688 ENSMUST00000211189 Gm34597 lincRNA Interval_150100 chr7 106408460 106409261 + 0 NA Intergenic Intergenic 15609 ENSMUSG00000053541.3 ENSMUSG00000053541 ENSMUST00000183414 Gm4759 unprocessed_pseudogene Interval_93441 chr2 73078799 73080491 + 0 NA Intergenic Intergenic -37103 ENSMUSG00000082455.3 ENSMUSG00000082455 ENSMUST00000120830 Gm13665 processed_pseudogene Interval_154008 chr8 11833989 11835990 + 0 NA exon (ENSMUSG00000031511.16, exon 20 of 20) protein_coding-exon (ENSMUSG00000031511.16, exon 20 of 20) 5411 ENSMUSG00000086500.1 ENSMUSG00000086500 ENSMUST00000152264 Gm15875 bidirectional_promoter_lncRNA Interval_165532 chr9 49071046 49071248 + 0 NA intron (ENSMUSG00000032264.9, intron 3 of 8) protein_coding-intron (ENSMUSG00000032264.9, intron 10 of 15) 15365 ENSMUSG00000032264.9 ENSMUSG00000032264 ENSMUST00000213787 Zw10 protein_coding Interval_62394 chr15 91734965 91737036 + 0 NA intron (ENSMUSG00000036273.15, intron 21 of 50) protein_coding-intron (ENSMUSG00000036273.15, intron 21 of 50) -78628 ENSMUSG00000036273.15 ENSMUSG00000036273 ENSMUST00000172797 Lrrk2 protein_coding Interval_110242 chr3 154705960 154706369 + 0 NA intron (ENSMUSG00000078161.8, intron 5 of 13) protein_coding-intron (ENSMUSG00000078161.8, intron 5 of 13) 5179 ENSMUSG00000092522.1 ENSMUSG00000092522 ENSMUST00000174217 Gm20389 antisense Interval_93500 chr2 73572078 73573332 + 0 NA intron (ENSMUSG00000027107.3, intron 4 of 8) protein_coding-intron (ENSMUSG00000027107.3, intron 4 of 8) 7633 ENSMUSG00000027107.3 ENSMUSG00000027107 ENSMUST00000028515 Chrna1 protein_coding Interval_48924 chr13 104911027 104912289 + 0 NA Intergenic Intergenic -7122 ENSMUSG00000114326.1 ENSMUSG00000114326 ENSMUST00000171334 Gm4938 processed_pseudogene Interval_39783 chr12 98236418 98236754 + 0 NA exon (ENSMUSG00000021003.10, exon 1 of 1) protein_coding-exon (ENSMUSG00000021003.10, exon 1 of 1) -20058 ENSMUSG00000021003.10 ENSMUSG00000021003 ENSMUST00000221322 Galc protein_coding Interval_163195 chr9 17865011 17866514 + 0 NA Intergenic Intergenic -79975 ENSMUSG00000111161.1 ENSMUSG00000111161 ENSMUST00000217305 Gm48849 processed_pseudogene Interval_101484 chr2 181764671 181765075 + 0 NA intron (ENSMUSG00000010505.16, intron 1 of 22) protein_coding-intron (ENSMUSG00000010505.16, intron 1 of 22) -2639 ENSMUSG00000010505.16 ENSMUSG00000010505 ENSMUST00000148766 Myt1 protein_coding Interval_93086 chr2 70011645 70013365 + 0 NA intron (ENSMUSG00000044308.17, intron 1 of 3) protein_coding-intron (ENSMUSG00000044308.17, intron 32 of 38) 23719 ENSMUSG00000044308.17 ENSMUSG00000044308 ENSMUST00000123890 Ubr3 protein_coding Interval_67193 chr16 44280380 44281704 + 0 NA TTS (ENSMUSG00000022696.17) protein_coding-TTS (ENSMUSG00000022696.17) 1456 ENSMUSG00000022696.17 ENSMUSG00000022696 ENSMUST00000124651 Sidt1 protein_coding Interval_128151 chr5 111330092 111331245 + 0 NA promoter-TSS (ENSMUSG00000050017.11) protein_coding-promoter-TSS (ENSMUSG00000050017.11) -36 ENSMUSG00000099219.1 ENSMUSG00000099219 ENSMUST00000184192 Gm27680 misc_RNA Interval_89536 chr2 22017405 22017908 + 0 NA Intergenic Intergenic -50170 ENSMUSG00000081467.1 ENSMUSG00000081467 ENSMUST00000119183 Gm13337 processed_pseudogene Interval_164443 chr9 37064871 37065394 + 0 NA intron (ENSMUSG00000035934.16, intron 2 of 4) protein_coding-intron (ENSMUSG00000035934.16, intron 2 of 12) 38733 ENSMUSG00000077401.1 ENSMUSG00000077401 ENSMUST00000104213 n-R5s82 rRNA Interval_162831 chr9 9941481 9941707 + 0 NA intron (ENSMUSG00000039488.15, intron 7 of 18) protein_coding-intron (ENSMUSG00000039488.15, intron 11 of 22) 47163 ENSMUSG00000098408.1 ENSMUSG00000098408 ENSMUST00000183808 Mir6237 miRNA Interval_94549 chr2 92143678 92144585 + 0 NA intron (ENSMUSG00000058318.15, intron 1 of 16) protein_coding-intron (ENSMUSG00000058318.15, intron 1 of 15) -40171 ENSMUSG00000058318.15 ENSMUSG00000058318 ENSMUST00000161044 Phf21a protein_coding Interval_142599 chr6 143910665 143911392 + 0 NA intron (ENSMUSG00000041540.16, intron 2 of 5) protein_coding-intron (ENSMUSG00000041540.16, intron 8 of 14) 79839 ENSMUSG00000107796.1 ENSMUSG00000107796 ENSMUST00000204049 Gm44068 TEC Interval_101285 chr2 180186973 180187275 + 0 NA intron (ENSMUSG00000015647.9, intron 46 of 78) protein_coding-intron (ENSMUSG00000015647.9, intron 46 of 78) -7301 ENSMUSG00000098735.1 ENSMUSG00000098735 ENSMUST00000185089 Mir7005 miRNA Interval_98754 chr2 154725264 154726160 + 0 NA intron (ENSMUSG00000085691.1, intron 2 of 2) lincRNA-intron (ENSMUSG00000085691.1, intron 2 of 2) -11990 ENSMUSG00000083975.1 ENSMUSG00000083975 ENSMUST00000120578 Gm14215 processed_pseudogene Interval_128954 chr5 116299841 116300150 + 0 NA Intergenic Intergenic -1305 ENSMUSG00000087124.1 ENSMUSG00000087124 ENSMUST00000151639 Gm13839 lincRNA Interval_131626 chr5 138907697 138908630 + 0 NA Intergenic Intergenic 86118 ENSMUSG00000025856.15 ENSMUSG00000025856 ENSMUST00000132051 Pdgfa protein_coding Interval_22398 chr11 9547404 9547596 + 0 NA intron (ENSMUSG00000004668.14, intron 48 of 61) protein_coding-intron (ENSMUSG00000004668.14, intron 48 of 61) 158123 ENSMUSG00000104137.1 ENSMUSG00000104137 ENSMUST00000195362 Gm36954 TEC Interval_99624 chr2 163658132 163659591 + 0 NA intron (ENSMUSG00000035268.14, intron 1 of 2) protein_coding-intron (ENSMUSG00000035268.14, intron 1 of 3) 475 ENSMUSG00000035268.14 ENSMUSG00000035268 ENSMUST00000109400 Pkig protein_coding Interval_78409 chr18 12599008 12600353 + 0 NA promoter-TSS (ENSMUSG00000024424.15) protein_coding-promoter-TSS (ENSMUSG00000024424.15) -216 ENSMUSG00000024424.15 ENSMUSG00000024424 ENSMUST00000143388 Ttc39c protein_coding Interval_94876 chr2 99123050 99124842 + 0 NA Intergenic Intergenic 233783 ENSMUSG00000101186.1 ENSMUSG00000101186 ENSMUST00000185786 Gm29235 lincRNA Interval_170688 chr9 110097819 110098278 + 0 NA TTS (ENSMUSG00000032480.17) protein_coding-TTS (ENSMUSG00000032480.17) 11091 ENSMUSG00000098956.1 ENSMUSG00000098956 ENSMUST00000184122 Gm27855 misc_RNA Interval_141442 chr6 128306927 128307226 + 0 NA Intergenic Intergenic -6281 ENSMUSG00000053173.12 ENSMUSG00000053173 ENSMUST00000118863 Rpl18-ps2 processed_pseudogene Interval_152558 chr7 134413793 134414690 + 0 NA intron (ENSMUSG00000030994.16, intron 2 of 3) protein_coding-intron (ENSMUSG00000030994.16, intron 2 of 3) 84743 ENSMUSG00000030994.16 ENSMUSG00000030994 ENSMUST00000205334 D7Ertd443e protein_coding Interval_42904 chr13 21253589 21254583 + 0 NA Intergenic Intergenic 38645 ENSMUSG00000004344.12 ENSMUSG00000004344 ENSMUST00000110491 Gpx5 protein_coding Interval_48883 chr13 104286624 104287292 + 0 NA promoter-TSS (ENSMUSG00000046169.10) protein_coding-promoter-TSS (ENSMUSG00000046169.10) -877 ENSMUSG00000046169.10 ENSMUSG00000046169 ENSMUST00000224504 Adamts6 protein_coding Interval_20354 chr10 117073292 117073714 + 0 NA exon (ENSMUSG00000020170.4, exon 10 of 10) protein_coding-exon (ENSMUSG00000020170.4, exon 10 of 10) -18602 ENSMUSG00000034024.8 ENSMUSG00000034024 ENSMUST00000218059 Cct2 protein_coding Interval_17961 chr10 81088732 81089143 + 0 NA intron (ENSMUSG00000035041.8, intron 7 of 11) protein_coding-intron (ENSMUSG00000035041.8, intron 7 of 11) 2969 ENSMUSG00000035041.8 ENSMUSG00000035041 ENSMUST00000125907 Creb3l3 protein_coding Interval_23493 chr11 22934883 22936968 + 0 NA intron (ENSMUSG00000051355.18, intron 1 of 1) protein_coding-intron (ENSMUSG00000051355.18, intron 3 of 3) 36934 ENSMUSG00000051355.18 ENSMUSG00000051355 ENSMUST00000093270 Commd1 protein_coding Interval_11240 chr1 180387254 180387841 + 0 NA intron (ENSMUSG00000038855.10, intron 2 of 7) protein_coding-intron (ENSMUSG00000038855.10, intron 2 of 7) 11103 ENSMUSG00000103772.1 ENSMUSG00000103772 ENSMUST00000194945 Gm36933 TEC Interval_61800 chr15 84231245 84233209 + 0 NA intron (ENSMUSG00000022438.6, intron 1 of 12) protein_coding-intron (ENSMUSG00000022438.6, intron 1 of 12) -24913 ENSMUSG00000022438.6 ENSMUSG00000022438 ENSMUST00000131158 Parvb protein_coding Interval_90399 chr2 30177651 30178938 + 0 NA promoter-TSS (ENSMUSG00000039660.16) protein_coding-promoter-TSS (ENSMUSG00000039660.16) -310 ENSMUSG00000039660.16 ENSMUSG00000039660 ENSMUST00000125141 Spout1 protein_coding Interval_52951 chr14 52232278 52232727 + 0 NA intron (ENSMUSG00000053754.14, intron 4 of 37) protein_coding-intron (ENSMUSG00000053754.14, intron 3 of 36) -22608 ENSMUSG00000093044.1 ENSMUSG00000093044 ENSMUST00000175303 Snord8 snoRNA Interval_4171 chr1 71118357 71119692 + 0 NA Intergenic Intergenic -15878 ENSMUSG00000026196.7 ENSMUSG00000026196 ENSMUST00000027393 Bard1 protein_coding Interval_134711 chr6 30585609 30585868 + 0 NA intron (ENSMUSG00000039070.5, intron 9 of 10) protein_coding-intron (ENSMUSG00000039070.5, intron 9 of 10) -9703 ENSMUSG00000086854.1 ENSMUSG00000086854 ENSMUST00000124153 Gm13781 antisense Interval_72498 chr17 30202817 30203986 + 0 NA intron (ENSMUSG00000044477.12, intron 1 of 1) protein_coding-intron (ENSMUSG00000044477.12, intron 4 of 4) 25926 ENSMUSG00000117974.1 ENSMUSG00000117974 ENSMUST00000236459 Tuba-rs1 transcribed_processed_pseudogene Interval_133813 chr6 12602976 12603171 + 0 NA intron (ENSMUSG00000032625.14, intron 1 of 27) protein_coding-intron (ENSMUSG00000032625.14, intron 1 of 27) -5923 ENSMUSG00000107422.1 ENSMUSG00000107422 ENSMUST00000203511 Gm44129 lincRNA Interval_89763 chr2 25266380 25267051 + 0 NA promoter-TSS (ENSMUSG00000048707.9) protein_coding-promoter-TSS (ENSMUSG00000048707.9) -2221 ENSMUSG00000048707.9 ENSMUSG00000048707 ENSMUST00000155738 Tprn protein_coding Interval_71154 chr17 20383583 20383779 + 0 NA TTS (ENSMUSG00000056910.5) protein_coding-TTS (ENSMUSG00000056910.5) 4618 ENSMUSG00000117018.1 ENSMUSG00000117018 ENSMUST00000233285 Gm7217 processed_pseudogene Interval_169873 chr9 102674346 102674690 + 0 NA Intergenic Intergenic -18367 ENSMUSG00000099491.1 ENSMUSG00000099491 ENSMUST00000185478 4930533D04Rik lincRNA Interval_80217 chr18 38349925 38350720 + 0 NA Intergenic Intergenic -6256 ENSMUSG00000088384.1 ENSMUSG00000088384 ENSMUST00000157759 Gm24690 rRNA Interval_106949 chr3 102141853 102142071 + 0 NA intron (ENSMUSG00000027861.13, intron 9 of 11) protein_coding-intron (ENSMUSG00000027861.13, intron 8 of 10) 7347 ENSMUSG00000106296.1 ENSMUSG00000106296 ENSMUST00000197326 4632404M16Rik sense_intronic Interval_134430 chr6 28596651 28597485 + 0 NA intron (ENSMUSG00000001424.14, intron 1 of 4) protein_coding-intron (ENSMUSG00000001424.14, intron 10 of 23) 28996 ENSMUSG00000103132.1 ENSMUSG00000103132 ENSMUST00000194736 Gm37978 TEC Interval_107952 chr3 117321885 117323237 + 0 NA promoter-TSS (ENSMUSG00000092666.1) miRNA-promoter-TSS (ENSMUSG00000092666.1) -380 ENSMUSG00000092666.1 ENSMUSG00000092666 ENSMUST00000174925 Gm22408 miRNA Interval_127950 chr5 109760685 109761143 + 0 NA Intergenic Intergenic -3027 ENSMUSG00000049477.5 ENSMUSG00000049477 ENSMUST00000061226 Gm8508 processed_pseudogene Interval_158098 chr8 78711121 78711942 + 0 NA exon (ENSMUSG00000031684.11, exon 11 of 11) protein_coding-exon (ENSMUSG00000031684.11, exon 11 of 11) 63014 ENSMUSG00000112190.1 ENSMUSG00000112190 ENSMUST00000218647 Gm47209 unitary_pseudogene Interval_116660 chr4 116438572 116438912 + 0 NA intron (ENSMUSG00000003810.13, intron 1 of 29) protein_coding-intron (ENSMUSG00000003810.13, intron 1 of 28) -10046 ENSMUSG00000082592.1 ENSMUSG00000082592 ENSMUST00000121683 Gm12950 processed_pseudogene Interval_115372 chr4 98287904 98288149 + 0 NA Intergenic Intergenic 12301 ENSMUSG00000064883.1 ENSMUSG00000064883 ENSMUST00000082949 Gm24203 misc_RNA Interval_11440 chr1 181942313 181942546 + 0 NA intron (ENSMUSG00000022995.16, intron 3 of 14) protein_coding-intron (ENSMUSG00000022995.16, intron 3 of 14) 10946 ENSMUSG00000103722.1 ENSMUSG00000103722 ENSMUST00000194331 2700078F05Rik TEC Interval_156400 chr8 47920526 47921442 + 0 NA intron (ENSMUSG00000031563.8, intron 1 of 22) protein_coding-intron (ENSMUSG00000031563.8, intron 1 of 22) 21802 ENSMUSG00000064519.1 ENSMUSG00000064519 ENSMUST00000082585 n-R5s97 rRNA Interval_31139 chr11 98384187 98384771 + 0 NA exon (ENSMUSG00000007877.2, exon 2 of 2) protein_coding-exon (ENSMUSG00000007877.2, exon 2 of 2) 668 ENSMUSG00000007877.2 ENSMUSG00000007877 ENSMUST00000008021 Tcap protein_coding Interval_74076 chr17 46442559 46443080 + 0 NA exon (ENSMUSG00000015599.9, exon 15 of 15) protein_coding-exon (ENSMUSG00000015599.9, exon 15 of 15) -2722 ENSMUSG00000091742.2 ENSMUSG00000091742 ENSMUST00000166852 Gm5093 processed_pseudogene Interval_47571 chr13 89215544 89216023 + 0 NA intron (ENSMUSG00000034488.14, intron 9 of 10) protein_coding-intron (ENSMUSG00000034488.14, intron 8 of 9) 362636 ENSMUSG00000094463.2 ENSMUSG00000094463 ENSMUST00000178288 Gm8546 processed_pseudogene Interval_21354 chr10 128127869 128128772 + 0 NA exon (ENSMUSG00000040054.17, exon 30 of 30) protein_coding-exon (ENSMUSG00000040054.17, exon 30 of 30) 36738 ENSMUSG00000040054.17 ENSMUSG00000040054 ENSMUST00000219980 Baz2a protein_coding Interval_45934 chr13 59434360 59434808 + 0 NA Intergenic Intergenic -15330 ENSMUSG00000114623.1 ENSMUSG00000114623 ENSMUST00000225137 Gm34788 lincRNA Interval_1046 chr1 14420209 14421909 + 0 NA Intergenic Intergenic -116489 ENSMUSG00000025932.14 ENSMUSG00000025932 ENSMUST00000185329 Eya1 protein_coding Interval_154688 chr8 22612437 22614855 + 0 NA Intergenic Intergenic -10397 ENSMUSG00000031535.7 ENSMUSG00000031535 ENSMUST00000033936 Dkk4 protein_coding Interval_12404 chr1 193105421 193105646 + 0 NA exon (ENSMUSG00000016181.9, exon 12 of 12) protein_coding-exon (ENSMUSG00000016181.9, exon 12 of 12) 24674 ENSMUSG00000016181.9 ENSMUSG00000016181 ENSMUST00000194124 Utp25 protein_coding Interval_69812 chr16 96839616 96839878 + 0 NA intron (ENSMUSG00000050272.10, intron 3 of 32) protein_coding-intron (ENSMUSG00000050272.10, intron 3 of 32) -78985 ENSMUSG00000117324.1 ENSMUSG00000117324 ENSMUST00000232718 Gm32432 antisense Interval_65552 chr16 23266178 23266433 + 0 NA intron (ENSMUSG00000022885.16, intron 2 of 7) protein_coding-intron (ENSMUSG00000022885.16, intron 2 of 7) 40284 ENSMUSG00000022885.16 ENSMUSG00000022885 ENSMUST00000115335 St6gal1 protein_coding Interval_162166 chr8 125659337 125660304 + 0 NA Intergenic Intergenic -9998 ENSMUSG00000050930.5 ENSMUSG00000050930 ENSMUST00000053078 Map10 protein_coding Interval_54005 chr14 64361549 64361798 + 0 NA intron (ENSMUSG00000054733.9, intron 1 of 2) protein_coding-intron (ENSMUSG00000054733.9, intron 6 of 10) 55275 ENSMUSG00000054733.9 ENSMUSG00000054733 ENSMUST00000209513 Msra protein_coding Interval_135822 chr6 47560364 47561975 + 0 NA intron (ENSMUSG00000029687.16, intron 3 of 6) protein_coding-intron (ENSMUSG00000029687.16, intron 3 of 19) -24047 ENSMUSG00000107628.1 ENSMUSG00000107628 ENSMUST00000203199 Gm44282 processed_pseudogene Interval_41312 chr12 112644125 112645502 + 0 NA promoter-TSS (ENSMUSG00000064326.13) protein_coding-promoter-TSS (ENSMUSG00000064326.13) -3019 ENSMUSG00000064326.13 ENSMUSG00000064326 ENSMUST00000222729 Siva1 protein_coding Interval_9970 chr1 164447375 164447633 + 0 NA intron (ENSMUSG00000026576.12, intron 1 of 2) protein_coding-intron (ENSMUSG00000026576.12, intron 2 of 5) -3785 ENSMUSG00000026576.12 ENSMUSG00000026576 ENSMUST00000192522 Atp1b1 protein_coding Interval_2151 chr1 36737221 36737573 + 0 NA intron (ENSMUSG00000102416.4, intron 5 of 8) protein_coding-intron (ENSMUSG00000102416.4, intron 5 of 8) 7395 ENSMUSG00000104237.1 ENSMUSG00000104237 ENSMUST00000193853 Gm33533 lincRNA Interval_135808 chr6 47486470 47486944 + 0 NA intron (ENSMUSG00000029686.15, intron 2 of 3) protein_coding-intron (ENSMUSG00000029686.15, intron 2 of 21) -32387 ENSMUSG00000052241.3 ENSMUSG00000052241 ENSMUST00000064013 A930035D04Rik pseudogene Interval_98135 chr2 148677802 148678284 + 0 NA Intergenic Intergenic 5442 ENSMUSG00000036992.10 ENSMUSG00000036992 ENSMUST00000047177 Nxt1 protein_coding Interval_14014 chr10 25488134 25488986 + 0 NA intron (ENSMUSG00000019978.16, intron 10 of 11) protein_coding-intron (ENSMUSG00000019978.16, intron 11 of 19) -6063 ENSMUSG00000019978.16 ENSMUSG00000019978 ENSMUST00000219201 Epb41l2 protein_coding Interval_149213 chr7 96324912 96325197 + 0 NA intron (ENSMUSG00000048078.16, intron 1 of 32) protein_coding-intron (ENSMUSG00000048078.16, intron 1 of 32) 16910 ENSMUSG00000085751.1 ENSMUSG00000085751 ENSMUST00000137193 Gm15412 antisense Interval_154446 chr8 17575845 17576754 + 0 NA Intergenic Intergenic -41018 ENSMUSG00000060924.15 ENSMUSG00000060924 ENSMUST00000122983 Csmd1 protein_coding Interval_171872 chr9 121907348 121908099 + 0 NA intron (ENSMUSG00000044534.8, intron 1 of 1) protein_coding-intron (ENSMUSG00000044534.8, intron 2 of 2) 1459 ENSMUSG00000044534.8 ENSMUSG00000044534 ENSMUST00000216326 Ackr2 protein_coding Interval_28109 chr11 72890559 72890743 + 0 NA intron (ENSMUSG00000055670.14, intron 36 of 54) protein_coding-intron (ENSMUSG00000055670.14, intron 36 of 54) 8859 ENSMUSG00000065298.1 ENSMUSG00000065298 ENSMUST00000083364 Gm26121 snRNA Interval_130769 chr5 130275662 130275902 + 0 NA intron (ENSMUSG00000056310.14, intron 7 of 8) protein_coding-intron (ENSMUSG00000056310.14, intron 7 of 15) 20163 ENSMUSG00000056310.14 ENSMUSG00000056310 ENSMUST00000147619 Tyw1 protein_coding Interval_147867 chr7 74524372 74524688 + 0 NA intron (ENSMUSG00000025790.14, intron 1 of 2) protein_coding-intron (ENSMUSG00000025790.14, intron 1 of 9) 131832 ENSMUSG00000085161.1 ENSMUSG00000085161 ENSMUST00000132826 Gm7580 antisense Interval_152973 chr7 140164906 140165578 + 0 NA promoter-TSS (ENSMUSG00000051180.7) protein_coding-promoter-TSS (ENSMUSG00000051180.7) -478 ENSMUSG00000051180.7 ENSMUSG00000051180 ENSMUST00000050585 Olfr522 protein_coding Interval_10103 chr1 165814313 165815121 + 0 NA intron (ENSMUSG00000005763.15, intron 1 of 8) protein_coding-intron (ENSMUSG00000005763.15, intron 1 of 7) -4975 ENSMUSG00000094394.1 ENSMUSG00000094394 ENSMUST00000178130 Gm23402 snRNA Interval_107481 chr3 107995252 107997281 + 0 NA Intergenic Intergenic 3579 ENSMUSG00000106614.1 ENSMUSG00000106614 ENSMUST00000200028 Gm43746 processed_pseudogene Interval_116409 chr4 111597393 111597582 + 0 NA intron (ENSMUSG00000061298.14, intron 1 of 3) protein_coding-intron (ENSMUSG00000061298.14, intron 9 of 12) 30792 ENSMUSG00000061298.14 ENSMUSG00000061298 ENSMUST00000142460 Agbl4 protein_coding Interval_67384 chr16 48265837 48266196 + 0 NA Intergenic Intergenic 4202 ENSMUSG00000116756.1 ENSMUSG00000116756 ENSMUST00000232184 Gm49770 processed_pseudogene Interval_166266 chr9 57894817 57895266 + 0 NA Intergenic Intergenic -17593 ENSMUSG00000055720.10 ENSMUSG00000055720 ENSMUST00000215936 Ubl7 protein_coding Interval_32837 chr11 111500642 111501010 + 0 NA Intergenic Intergenic 112480 ENSMUSG00000082448.1 ENSMUSG00000082448 ENSMUST00000120443 Gm11676 processed_pseudogene Interval_154283 chr8 14013989 14015591 + 0 NA Intergenic Intergenic 15850 ENSMUSG00000110058.1 ENSMUSG00000110058 ENSMUST00000210969 Gm5907 lincRNA Interval_43015 chr13 23088324 23088800 + 0 NA Intergenic Intergenic -8414 ENSMUSG00000115697.2 ENSMUSG00000115697 ENSMUST00000227317 Vmn1r216 protein_coding Interval_169847 chr9 102463562 102463824 + 0 NA Intergenic Intergenic -23097 ENSMUSG00000111859.1 ENSMUSG00000111859 ENSMUST00000213941 Gm47983 TEC Interval_144214 chr7 19996569 19997618 + 0 NA intron (ENSMUSG00000060508.16, intron 1 of 2) protein_coding-intron (ENSMUSG00000060508.16, intron 1 of 2) 5628 ENSMUSG00000060508.16 ENSMUSG00000060508 ENSMUST00000117909 Nlrp9b protein_coding Interval_153656 chr8 4312836 4313458 + 0 NA promoter-TSS (ENSMUSG00000040028.10) protein_coding-promoter-TSS (ENSMUSG00000040028.10) -528 ENSMUSG00000040028.10 ENSMUSG00000040028 ENSMUST00000208987 Elavl1 protein_coding Interval_137356 chr6 71672801 71673395 + 0 NA promoter-TSS (ENSMUSG00000108496.1) processed_pseudogene-promoter-TSS (ENSMUSG00000108496.1) -420 ENSMUSG00000108496.1 ENSMUSG00000108496 ENSMUST00000205719 Gm44768 processed_pseudogene Interval_93838 chr2 77343825 77344554 + 0 NA Intergenic Intergenic 8830 ENSMUSG00000082006.1 ENSMUSG00000082006 ENSMUST00000122325 Gm13649 processed_pseudogene Interval_38295 chr12 76965116 76966089 + 0 NA Intergenic Intergenic -6858 ENSMUSG00000112857.1 ENSMUSG00000112857 ENSMUST00000219581 Gm35041 lincRNA Interval_76419 chr17 80054590 80054986 + 0 NA TTS (ENSMUSG00000117518.1) processed_pseudogene-TTS (ENSMUSG00000117518.1) 762 ENSMUSG00000117518.1 ENSMUSG00000117518 ENSMUST00000234039 Gpx4-ps1 processed_pseudogene Interval_14725 chr10 39394627 39394882 + 0 NA intron (ENSMUSG00000019843.14, intron 1 of 12) protein_coding-intron (ENSMUSG00000019843.14, intron 1 of 13) -25255 ENSMUSG00000019843.14 ENSMUSG00000019843 ENSMUST00000123205 Fyn protein_coding Interval_116808 chr4 117389470 117389886 + 0 NA intron (ENSMUSG00000028677.19, intron 2 of 2) protein_coding-intron (ENSMUSG00000028677.19, intron 2 of 14) -56272 ENSMUSG00000086876.1 ENSMUSG00000086876 ENSMUST00000136115 Gm12828 antisense Interval_155620 chr8 35224140 35224924 + 0 NA intron (ENSMUSG00000109607.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000109607.1, intron 1 of 1) 1574 ENSMUSG00000109607.1 ENSMUSG00000109607 ENSMUST00000209249 Gm34533 lincRNA Interval_113783 chr4 58568876 58569097 + 0 NA Intergenic Intergenic -20585 ENSMUSG00000038668.14 ENSMUSG00000038668 ENSMUST00000145361 Lpar1 protein_coding Interval_19289 chr10 96131499 96132787 + 0 NA Intergenic Intergenic -2401 ENSMUSG00000112316.1 ENSMUSG00000112316 ENSMUST00000218910 Gm48425 processed_pseudogene Interval_99943 chr2 166030677 166031618 + 0 NA intron (ENSMUSG00000027678.17, intron 1 of 22) protein_coding-intron (ENSMUSG00000027678.17, intron 1 of 22) -16771 ENSMUSG00000027678.17 ENSMUSG00000027678 ENSMUST00000139394 Ncoa3 protein_coding Interval_46944 chr13 73626267 73627681 + 0 NA promoter-TSS (ENSMUSG00000021611.9) protein_coding-promoter-TSS (ENSMUSG00000021611.9) 10170 ENSMUSG00000021610.8 ENSMUSG00000021610 ENSMUST00000221130 Clptm1l protein_coding Interval_120163 chr4 143134735 143134952 + 0 NA exon (ENSMUSG00000057637.13, exon 8 of 10) protein_coding-exon (ENSMUSG00000057637.13, exon 8 of 10) 1319 ENSMUSG00000106597.1 ENSMUSG00000106597 ENSMUST00000197026 Mir7021 miRNA Interval_48610 chr13 100659535 100660547 + 0 NA intron (ENSMUSG00000078941.9, intron 2 of 4) protein_coding-intron (ENSMUSG00000078941.9, intron 2 of 4) 8415 ENSMUSG00000052293.14 ENSMUSG00000052293 ENSMUST00000190594 Taf9 protein_coding Interval_128633 chr5 114412482 114413155 + 0 NA intron (ENSMUSG00000029577.13, intron 13 of 17) protein_coding-intron (ENSMUSG00000029577.13, intron 23 of 27) 8350 ENSMUSG00000098731.1 ENSMUSG00000098731 ENSMUST00000183408 Mir7027 miRNA Interval_61680 chr15 83360191 83360468 + 0 NA intron (ENSMUSG00000075511.9, intron 2 of 3) lincRNA-intron (ENSMUSG00000075511.9, intron 3 of 3) 6682 ENSMUSG00000075511.9 ENSMUSG00000075511 ENSMUST00000177890 1700001L05Rik lincRNA Interval_123610 chr5 33771978 33772144 + 0 NA intron (ENSMUSG00000005299.6, intron 2 of 2) protein_coding-intron (ENSMUSG00000005299.6, intron 2 of 13) -2851 ENSMUSG00000107149.1 ENSMUSG00000107149 ENSMUST00000202183 Gm30708 processed_pseudogene Interval_96558 chr2 125684035 125685939 + 0 NA intron (ENSMUSG00000035109.14, intron 2 of 11) protein_coding-intron (ENSMUSG00000035109.14, intron 2 of 11) 11892 ENSMUSG00000091337.3 ENSMUSG00000091337 ENSMUST00000164756 Eid1 protein_coding Interval_153178 chr7 142119487 142119985 + 0 NA TTS (ENSMUSG00000109859.1) protein_coding-TTS (ENSMUSG00000109859.1) 993 ENSMUSG00000109859.1 ENSMUSG00000109859 ENSMUST00000209890 Gm45618 protein_coding Interval_61569 chr15 82493757 82494999 + 0 NA Intergenic Intergenic -10218 ENSMUSG00000098745.1 ENSMUSG00000098745 ENSMUST00000184586 Gm27825 miRNA Interval_69036 chr16 90240046 90240266 + 0 NA intron (ENSMUSG00000022983.16, intron 19 of 19) protein_coding-intron (ENSMUSG00000022983.16, intron 19 of 19) 19402 ENSMUSG00000022982.10 ENSMUSG00000022982 ENSMUST00000232505 Sod1 protein_coding Interval_126637 chr5 91434789 91435774 + 0 NA Intergenic Intergenic -32459 ENSMUSG00000082361.6 ENSMUSG00000082361 ENSMUST00000201090 Btc protein_coding Interval_131322 chr5 136444695 136445018 + 0 NA intron (ENSMUSG00000029705.17, intron 1 of 20) protein_coding-intron (ENSMUSG00000029705.17, intron 2 of 23) -69053 ENSMUSG00000106479.1 ENSMUSG00000106479 ENSMUST00000200230 Mir721 miRNA Interval_85701 chr19 29777388 29777720 + 0 NA intron (ENSMUSG00000046138.15, intron 1 of 6) protein_coding-intron (ENSMUSG00000046138.15, intron 2 of 7) 28435 ENSMUSG00000046138.15 ENSMUSG00000046138 ENSMUST00000176773 9930021J03Rik protein_coding Interval_161213 chr8 118701060 118701985 + 0 NA intron (ENSMUSG00000031841.19, intron 3 of 7) protein_coding-intron (ENSMUSG00000031841.19, intron 3 of 13) -25378 ENSMUSG00000087707.1 ENSMUSG00000087707 ENSMUST00000157082 Gm22999 snoRNA Interval_121159 chr4 153654124 153654499 + 0 NA Intergenic Intergenic -172132 ENSMUSG00000039546.9 ENSMUSG00000039546 ENSMUST00000149177 Ajap1 protein_coding Interval_39571 chr12 90902919 90903148 + 0 NA intron (ENSMUSG00000097071.2, intron 2 of 4) lincRNA-intron (ENSMUSG00000097071.2, intron 2 of 4) 35349 ENSMUSG00000113806.1 ENSMUSG00000113806 ENSMUST00000221621 Gm47688 processed_pseudogene Interval_62436 chr15 92703932 92704153 + 0 NA exon (ENSMUSG00000115858.1, exon 2 of 2) antisense-exon (ENSMUSG00000115858.1, exon 2 of 2) 1913 ENSMUSG00000115858.1 ENSMUSG00000115858 ENSMUST00000230757 4930588J15Rik antisense Interval_149276 chr7 96889497 96890643 + 0 NA intron (ENSMUSG00000048078.16, intron 29 of 32) protein_coding-intron (ENSMUSG00000048078.16, intron 29 of 32) -26691 ENSMUSG00000089259.1 ENSMUSG00000089259 ENSMUST00000158634 Gm25712 rRNA Interval_89373 chr2 20134527 20134988 + 0 NA intron (ENSMUSG00000036617.17, intron 2 of 7) protein_coding-intron (ENSMUSG00000036617.17, intron 2 of 7) -96863 ENSMUSG00000082164.1 ENSMUSG00000082164 ENSMUST00000121607 Gm13360 processed_pseudogene Interval_12054 chr1 189178557 189179907 + 0 NA Intergenic Intergenic 31781 ENSMUSG00000103669.1 ENSMUSG00000103669 ENSMUST00000194444 2900042K21Rik sense_overlapping Interval_28070 chr11 72617329 72617575 + 0 NA intron (ENSMUSG00000020794.13, intron 1 of 4) protein_coding-intron (ENSMUSG00000020794.13, intron 1 of 5) -1302 ENSMUSG00000064567.1 ENSMUSG00000064567 ENSMUST00000082633 Gm24143 snoRNA Interval_117124 chr4 119727023 119727235 + 0 NA Intergenic Intergenic -68348 ENSMUSG00000032978.14 ENSMUSG00000032978 ENSMUST00000044426 Guca2b protein_coding Interval_147347 chr7 66017810 66018030 + 0 NA intron (ENSMUSG00000030513.14, intron 11 of 19) protein_coding-intron (ENSMUSG00000030513.14, intron 13 of 21) -25682 ENSMUSG00000108793.1 ENSMUSG00000108793 ENSMUST00000206065 Gm45213 protein_coding Interval_120533 chr4 149172440 149172811 + 0 NA Intergenic Intergenic -5854 ENSMUSG00000028961.15 ENSMUSG00000028961 ENSMUST00000143944 Pgd protein_coding Interval_72722 chr17 31763014 31763219 + 0 NA Intergenic Intergenic -26410 ENSMUSG00000117355.1 ENSMUSG00000117355 ENSMUST00000234824 Gm49999 lincRNA Interval_163995 chr9 30573289 30574171 + 0 NA Intergenic Intergenic 58857 ENSMUSG00000111413.1 ENSMUSG00000111413 ENSMUST00000216883 Gm47716 lincRNA Interval_102204 chr3 19442292 19442619 + 0 NA Intergenic Intergenic -88792 ENSMUSG00000027606.12 ENSMUSG00000027606 ENSMUST00000165693 Dnajc5b protein_coding Interval_68902 chr16 88222770 88223040 + 0 NA intron (ENSMUSG00000022935.16, intron 1 of 16) protein_coding-intron (ENSMUSG00000022935.16, intron 1 of 15) 66959 ENSMUSG00000022935.16 ENSMUSG00000022935 ENSMUST00000210910 Grik1 protein_coding Interval_140488 chr6 118769524 118770937 + 0 NA intron (ENSMUSG00000051331.16, intron 2 of 44) protein_coding-intron (ENSMUSG00000051331.16, intron 5 of 46) -64670 ENSMUSG00000089115.1 ENSMUSG00000089115 ENSMUST00000158490 Gm25905 snRNA Interval_173369 chrX 85164513 85165198 + 0 NA intron (ENSMUSG00000045103.19, intron 46 of 50) protein_coding-intron (ENSMUSG00000045103.19, intron 13 of 17) 71711 ENSMUSG00000081379.1 ENSMUSG00000081379 ENSMUST00000118249 Gm14771 processed_pseudogene Interval_142482 chr6 142770037 142771005 + 0 NA TTS (ENSMUSG00000030282.14) protein_coding-TTS (ENSMUSG00000030282.14) 13746 ENSMUSG00000030282.14 ENSMUSG00000030282 ENSMUST00000146643 Cmas protein_coding Interval_68140 chr16 65631519 65632048 + 0 NA Intergenic Intergenic -18364 ENSMUSG00000116578.1 ENSMUSG00000116578 ENSMUST00000232570 Gm49633 processed_pseudogene Interval_57472 chr15 11567335 11568674 + 0 NA Intergenic Intergenic -62725 ENSMUSG00000115804.1 ENSMUSG00000115804 ENSMUST00000228129 Gm49107 lincRNA Interval_27019 chr11 62406125 62406746 + 0 NA intron (ENSMUSG00000018501.17, intron 5 of 14) protein_coding-intron (ENSMUSG00000018501.17, intron 6 of 45) -23081 ENSMUSG00000018501.17 ENSMUSG00000018501 ENSMUST00000141447 Ncor1 protein_coding Interval_18250 chr10 84292944 84293181 + 0 NA Intergenic Intergenic -15824 ENSMUSG00000111875.1 ENSMUSG00000111875 ENSMUST00000214125 Gm5425 processed_pseudogene Interval_38059 chr12 75394033 75394290 + 0 NA exon (ENSMUSG00000046768.13, exon 4 of 4) protein_coding-exon (ENSMUSG00000046768.13, exon 4 of 4) 22620 ENSMUSG00000048982.3 ENSMUSG00000048982 ENSMUST00000051079 Gphb5 protein_coding Interval_150998 chr7 117515824 117517215 + 0 NA intron (ENSMUSG00000030657.11, intron 1 of 1) protein_coding-intron (ENSMUSG00000030657.11, intron 2 of 11) 41027 ENSMUSG00000030657.11 ENSMUSG00000030657 ENSMUST00000161889 Xylt1 protein_coding Interval_106679 chr3 98434012 98435034 + 0 NA intron (ENSMUSG00000050064.14, intron 1 of 4) protein_coding-intron (ENSMUSG00000050064.14, intron 1 of 4) 14453 ENSMUSG00000106107.1 ENSMUSG00000106107 ENSMUST00000187850 Gm43190 sense_intronic Interval_15814 chr10 57491724 57492501 + 0 NA intron (ENSMUSG00000019878.8, intron 2 of 13) protein_coding-intron (ENSMUSG00000019878.8, intron 1 of 11) 5727 ENSMUSG00000019878.8 ENSMUSG00000019878 ENSMUST00000220162 Hsf2 protein_coding Interval_39018 chr12 84494747 84494978 + 0 NA intron (ENSMUSG00000085793.2, intron 4 of 4) protein_coding-intron (ENSMUSG00000085793.2, intron 5 of 5) -35182 ENSMUSG00000085793.2 ENSMUSG00000085793 ENSMUST00000222741 Lin52 protein_coding Interval_32351 chr11 107108710 107109128 + 0 NA intron (ENSMUSG00000040481.17, intron 2 of 29) protein_coding-intron (ENSMUSG00000040481.17, intron 2 of 27) -48489 ENSMUSG00000087596.1 ENSMUSG00000087596 ENSMUST00000129501 Gm11715 antisense Interval_38755 chr12 81938117 81938382 + 0 NA intron (ENSMUSG00000021140.9, intron 8 of 35) protein_coding-intron (ENSMUSG00000021140.9, intron 8 of 35) -34938 ENSMUSG00000021140.9 ENSMUSG00000021140 ENSMUST00000222468 Pcnx protein_coding Interval_13566 chr10 19811207 19812231 + 0 NA Intergenic Intergenic 28865 ENSMUSG00000094977.1 ENSMUSG00000094977 ENSMUST00000177746 Gm25256 snRNA Interval_13946 chr10 24897884 24898123 + 0 NA intron (ENSMUSG00000019984.16, intron 17 of 23) protein_coding-intron (ENSMUSG00000019984.16, intron 16 of 28) 4023 ENSMUSG00000096809.1 ENSMUSG00000096809 ENSMUST00000179967 Gm23410 snRNA Interval_172021 chr9 123578011 123578209 + 0 NA intron (ENSMUSG00000025240.10, intron 12 of 19) protein_coding-intron (ENSMUSG00000025240.10, intron 12 of 19) 48351 ENSMUSG00000025240.10 ENSMUSG00000025240 ENSMUST00000215004 Sacm1l protein_coding Interval_150101 chr7 106427040 106427668 + 0 NA TTS (ENSMUSG00000077777.1) snoRNA-TTS (ENSMUSG00000077777.1) 642 ENSMUSG00000077777.1 ENSMUSG00000077777 ENSMUST00000104589 Gm22372 snoRNA Interval_2057 chr1 36149008 36149914 + 0 NA intron (ENSMUSG00000037470.14, intron 37 of 39) protein_coding-intron (ENSMUSG00000037470.14, intron 38 of 40) -5148 ENSMUSG00000098752.1 ENSMUSG00000098752 ENSMUST00000184790 Mir6897 miRNA Interval_97297 chr2 133235669 133235877 + 0 NA Intergenic Intergenic 36162 ENSMUSG00000083689.1 ENSMUSG00000083689 ENSMUST00000117717 Gm14094 processed_pseudogene Interval_6052 chr1 95060079 95060336 + 0 NA Intergenic Intergenic -20164 ENSMUSG00000089310.1 ENSMUSG00000089310 ENSMUST00000158685 Gm23181 snoRNA Interval_36197 chr12 38806925 38807324 + 0 NA intron (ENSMUSG00000004151.17, intron 3 of 10) protein_coding-intron (ENSMUSG00000004151.17, intron 5 of 12) -12419 ENSMUSG00000004151.17 ENSMUSG00000004151 ENSMUST00000161591 Etv1 protein_coding Interval_38139 chr12 75892947 75895446 + 0 NA intron (ENSMUSG00000063450.14, intron 9 of 12) protein_coding-intron (ENSMUSG00000063450.14, intron 9 of 115) -14907 ENSMUSG00000092922.1 ENSMUSG00000092922 ENSMUST00000175181 Mir5101 miRNA Interval_64711 chr16 14385220 14385502 + 0 NA intron (ENSMUSG00000023088.17, intron 1 of 2) protein_coding-intron (ENSMUSG00000023088.17, intron 1 of 30) 2554 ENSMUSG00000089106.1 ENSMUSG00000089106 ENSMUST00000158481 Gm23116 snRNA Interval_18729 chr10 89739700 89739944 + 0 NA Intergenic Intergenic -5416 ENSMUSG00000019951.10 ENSMUSG00000019951 ENSMUST00000219819 Uhrf1bp1l protein_coding Interval_151930 chr7 127611244 127612263 + 0 NA TTS (ENSMUSG00000045639.14) protein_coding-TTS (ENSMUSG00000045639.14) 2612 ENSMUSG00000045639.14 ENSMUSG00000045639 ENSMUST00000152315 Zfp629 protein_coding Interval_22699 chr11 13339563 13340060 + 0 NA Intergenic Intergenic 342145 ENSMUSG00000084055.1 ENSMUSG00000084055 ENSMUST00000117869 Gm12004 processed_pseudogene Interval_145987 chr7 42866649 42867895 + 0 NA promoter-TSS (ENSMUSG00000092225.1) protein_coding-promoter-TSS (ENSMUSG00000092225.1) -38 ENSMUSG00000092225.1 ENSMUSG00000092225 ENSMUST00000174558 Gm2381 protein_coding Interval_4632 chr1 75553539 75553877 + 0 NA TTS (ENSMUSG00000006576.16) protein_coding-TTS (ENSMUSG00000006576.16) 7052 ENSMUSG00000006576.16 ENSMUSG00000006576 ENSMUST00000132110 Slc4a3 protein_coding Interval_146626 chr7 48852942 48853327 + 0 NA Intergenic Intergenic -13574 ENSMUSG00000030470.15 ENSMUSG00000030470 ENSMUST00000208050 Csrp3 protein_coding Interval_156610 chr8 54540348 54540688 + 0 NA intron (ENSMUSG00000031519.4, intron 1 of 2) protein_coding-intron (ENSMUSG00000031519.4, intron 1 of 2) -10520 ENSMUSG00000054408.9 ENSMUSG00000054408 ENSMUST00000067476 Spcs3 protein_coding Interval_109966 chr3 152225086 152225672 + 0 NA promoter-TSS (ENSMUSG00000028034.15) protein_coding-promoter-TSS (ENSMUSG00000028034.15) 14897 ENSMUSG00000028034.15 ENSMUSG00000028034 ENSMUST00000200207 Fubp1 protein_coding Interval_57423 chr15 10690566 10691272 + 0 NA intron (ENSMUSG00000022246.14, intron 1 of 1) protein_coding-intron (ENSMUSG00000022246.14, intron 1 of 17) 23179 ENSMUSG00000022246.14 ENSMUSG00000022246 ENSMUST00000227366 Rai14 protein_coding Interval_74526 chr17 52955921 52956203 + 0 NA intron (ENSMUSG00000035580.10, intron 1 of 4) protein_coding-intron (ENSMUSG00000035580.10, intron 12 of 15) 6002 ENSMUSG00000035580.10 ENSMUSG00000035580 ENSMUST00000184279 Kcnh8 protein_coding Interval_173178 chrX 73880218 73881616 + 0 NA promoter-TSS (ENSMUSG00000031391.18) protein_coding-promoter-TSS (ENSMUSG00000031391.18) -11186 ENSMUSG00000031390.8 ENSMUSG00000031390 ENSMUST00000114395 Avpr2 protein_coding Interval_107603 chr3 108828999 108829258 + 0 NA intron (ENSMUSG00000027882.18, intron 1 of 4) protein_coding-intron (ENSMUSG00000027882.18, intron 1 of 18) 11387 ENSMUSG00000027882.18 ENSMUSG00000027882 ENSMUST00000106596 Stxbp3 protein_coding Interval_52941 chr14 52164534 52164959 + 0 NA intron (ENSMUSG00000035726.8, intron 22 of 25) protein_coding-intron (ENSMUSG00000035726.8, intron 22 of 25) -1616 ENSMUSG00000035726.8 ENSMUSG00000035726 ENSMUST00000227577 Supt16 protein_coding Interval_52512 chr14 47214785 47215049 + 0 NA promoter-TSS (ENSMUSG00000115400.1) processed_pseudogene-promoter-TSS (ENSMUSG00000115400.1) -179 ENSMUSG00000115400.1 ENSMUSG00000115400 ENSMUST00000228694 Gm49137 processed_pseudogene Interval_156155 chr8 45234988 45236858 + 0 NA Intergenic Intergenic 26108 ENSMUSG00000031645.4 ENSMUSG00000031645 ENSMUST00000210622 F11 protein_coding Interval_14304 chr10 30689564 30690378 + 0 NA intron (ENSMUSG00000039697.16, intron 7 of 13) protein_coding-intron (ENSMUSG00000039697.16, intron 9 of 15) -16744 ENSMUSG00000088600.1 ENSMUSG00000088600 ENSMUST00000157975 Gm24189 rRNA Interval_130421 chr5 127486975 127487459 + 0 NA intron (ENSMUSG00000034324.16, intron 3 of 8) protein_coding-intron (ENSMUSG00000034324.16, intron 3 of 8) -66037 ENSMUSG00000034324.16 ENSMUSG00000034324 ENSMUST00000145748 Tmem132c protein_coding Interval_172856 chrX 52183459 52184253 + 0 NA Intergenic Intergenic -18604 ENSMUSG00000031119.4 ENSMUSG00000031119 ENSMUST00000033450 Gpc4 protein_coding Interval_144457 chr7 25275772 25276334 + 0 NA intron (ENSMUSG00000005442.13, intron 2 of 20) protein_coding-intron (ENSMUSG00000005442.13, intron 2 of 20) -15155 ENSMUSG00000005442.13 ENSMUSG00000005442 ENSMUST00000163901 Cic protein_coding Interval_90279 chr2 29502625 29503011 + 0 NA intron (ENSMUSG00000026799.15, intron 4 of 4) protein_coding-intron (ENSMUSG00000026799.15, intron 5 of 7) 4606 ENSMUSG00000082413.1 ENSMUSG00000082413 ENSMUST00000117074 Gm13401 processed_pseudogene Interval_102554 chr3 27709553 27711457 + 0 NA promoter-TSS (ENSMUSG00000039286.12) protein_coding-promoter-TSS (ENSMUSG00000039286.12) -107 ENSMUSG00000039286.12 ENSMUSG00000039286 ENSMUST00000193779 Fndc3b protein_coding Interval_10470 chr1 171172734 171172996 + 0 NA TTS (ENSMUSG00000038370.6) protein_coding-TTS (ENSMUSG00000038370.6) 22152 ENSMUSG00000056569.11 ENSMUSG00000056569 ENSMUST00000125565 Mpz protein_coding Interval_17066 chr10 70981070 70981517 + 0 NA intron (ENSMUSG00000112745.1, intron 1 of 1) protein_coding-intron (ENSMUSG00000014329.14, intron 3 of 21) 11747 ENSMUSG00000112745.1 ENSMUSG00000112745 ENSMUST00000219321 Gm48025 sense_intronic Interval_68631 chr16 81975394 81976242 + 0 NA Intergenic Intergenic -43907 ENSMUSG00000116865.1 ENSMUSG00000116865 ENSMUST00000232129 Gm49560 lincRNA Interval_170388 chr9 107612138 107613450 + 0 NA Intergenic Intergenic -6111 ENSMUSG00000057969.15 ENSMUSG00000057969 ENSMUST00000193551 Sema3b protein_coding Interval_164807 chr9 42033589 42033886 + 0 NA exon (ENSMUSG00000086360.1, exon 4 of 4) antisense-exon (ENSMUSG00000086360.1, exon 4 of 4) 11122 ENSMUSG00000086360.1 ENSMUSG00000086360 ENSMUST00000143710 Gm16214 antisense Interval_55083 chr14 77837421 77837729 + 0 NA intron (ENSMUSG00000022013.4, intron 1 of 2) protein_coding-intron (ENSMUSG00000022013.4, intron 4 of 4) 2634 ENSMUSG00000022013.4 ENSMUSG00000022013 ENSMUST00000022590 Dnajc15 protein_coding Interval_30027 chr11 88777727 88778022 + 0 NA Intergenic Intergenic -34505 ENSMUSG00000085646.1 ENSMUSG00000085646 ENSMUST00000134567 Gm11493 lincRNA Interval_102930 chr3 32879233 32879431 + 0 NA TTS (ENSMUSG00000081883.2) processed_pseudogene-TTS (ENSMUSG00000081883.2) 1276 ENSMUSG00000081883.2 ENSMUSG00000081883 ENSMUST00000119937 Gm15574 processed_pseudogene Interval_52009 chr14 34607134 34608322 + 0 NA Intergenic Intergenic -15889 ENSMUSG00000021799.9 ENSMUSG00000021799 ENSMUST00000022331 Opn4 protein_coding Interval_151935 chr7 127651671 127652819 + 0 NA Intergenic Intergenic 5989 ENSMUSG00000108766.1 ENSMUSG00000108766 ENSMUST00000206375 Gm44760 TEC Interval_5311 chr1 87469792 87470589 + 0 NA promoter-TSS (ENSMUSG00000026258.5) protein_coding-promoter-TSS (ENSMUSG00000026258.5) -2349 ENSMUSG00000026258.5 ENSMUSG00000026258 ENSMUST00000191095 Snorc protein_coding Interval_149962 chr7 103813696 103813903 + 0 NA exon (ENSMUSG00000073940.3, exon 1 of 3) protein_coding-exon (ENSMUSG00000073940.3, exon 1 of 3) 197 ENSMUSG00000073940.3 ENSMUSG00000073940 ENSMUST00000098192 Hbb-bt protein_coding Interval_172206 chrX 9212010 9212435 + 0 NA intron (ENSMUSG00000047344.9, intron 1 of 4) protein_coding-intron (ENSMUSG00000047344.9, intron 1 of 4) 12320 ENSMUSG00000047344.9 ENSMUSG00000047344 ENSMUST00000069763 Lancl3 protein_coding Interval_148929 chr7 90146055 90146347 + 0 NA exon (ENSMUSG00000109498.1, exon 1 of 1) TEC-exon (ENSMUSG00000109498.1, exon 1 of 1) 253 ENSMUSG00000109498.1 ENSMUSG00000109498 ENSMUST00000207029 Gm45222 TEC Interval_47616 chr13 90112758 90112971 + 0 NA TTS (ENSMUSG00000012422.14) protein_coding-TTS (ENSMUSG00000012422.14) 13883 ENSMUSG00000088308.1 ENSMUSG00000088308 ENSMUST00000157683 Gm24507 snoRNA Interval_59245 chr15 49647241 49647934 + 0 NA Intergenic Intergenic 109392 ENSMUSG00000065760.1 ENSMUSG00000065760 ENSMUST00000083826 Gm23848 snRNA Interval_149138 chr7 94552372 94552857 + 0 NA intron (ENSMUSG00000108532.1, intron 2 of 2) lincRNA-intron (ENSMUSG00000108532.1, intron 2 of 2) 49794 ENSMUSG00000108433.1 ENSMUSG00000108433 ENSMUST00000205372 Gm19761 processed_pseudogene Interval_58355 chr15 33133496 33133816 + 0 NA intron (ENSMUSG00000039007.10, intron 1 of 3) protein_coding-intron (ENSMUSG00000039007.10, intron 1 of 7) 50404 ENSMUSG00000039007.10 ENSMUSG00000039007 ENSMUST00000226896 Cpq protein_coding Interval_28010 chr11 72157335 72157704 + 0 NA intron (ENSMUSG00000020807.15, intron 18 of 18) protein_coding-intron (ENSMUSG00000107877.2, intron 18 of 18) -21741 ENSMUSG00000040543.16 ENSMUSG00000040543 ENSMUST00000142471 Pitpnm3 protein_coding Interval_76673 chr17 83365452 83366102 + 0 NA intron (ENSMUSG00000032624.16, intron 1 of 22) protein_coding-intron (ENSMUSG00000032624.16, intron 1 of 20) 77231 ENSMUSG00000094256.2 ENSMUSG00000094256 ENSMUST00000077420 Rpl21-ps7 processed_pseudogene Interval_71874 chr17 26660201 26660451 + 0 NA Intergenic Intergenic -15831 ENSMUSG00000015575.15 ENSMUSG00000015575 ENSMUST00000167352 Atp6v0e protein_coding Interval_130765 chr5 130254398 130257633 + 0 NA promoter-TSS (ENSMUSG00000025337.10) protein_coding-promoter-TSS (ENSMUSG00000025337.10) 396 ENSMUSG00000056310.14 ENSMUSG00000056310 ENSMUST00000147619 Tyw1 protein_coding Interval_24907 chr11 41111160 41112291 + 0 NA Intergenic Intergenic -30038 ENSMUSG00000084129.1 ENSMUSG00000084129 ENSMUST00000119350 Hmgb1-ps1 processed_pseudogene Interval_157952 chr8 77233581 77233850 + 0 NA intron (ENSMUSG00000031618.13, intron 6 of 6) protein_coding-intron (ENSMUSG00000031618.13, intron 7 of 7) 39020 ENSMUSG00000088942.1 ENSMUSG00000088942 ENSMUST00000158317 Gm23260 snRNA Interval_69516 chr16 93990337 93990658 + 0 NA intron (ENSMUSG00000047109.13, intron 1 of 2) protein_coding-intron (ENSMUSG00000047109.13, intron 1 of 2) -7909 ENSMUSG00000116681.1 ENSMUSG00000116681 ENSMUST00000232110 Gm49618 sense_intronic Interval_103896 chr3 54703784 54705278 + 0 NA intron (ENSMUSG00000027751.13, intron 8 of 14) protein_coding-intron (ENSMUSG00000027751.13, intron 3 of 9) 9822 ENSMUSG00000094487.1 ENSMUSG00000094487 ENSMUST00000178832 Gm21958 protein_coding Interval_168302 chr9 78526964 78529072 + 0 NA Intergenic Intergenic 7472 ENSMUSG00000111417.1 ENSMUSG00000111417 ENSMUST00000214586 Gm47430 lincRNA Interval_50336 chr14 11902580 11903484 + 0 NA intron (ENSMUSG00000021745.14, intron 2 of 3) protein_coding-intron (ENSMUSG00000021745.14, intron 2 of 29) -1647 ENSMUSG00000114267.1 ENSMUSG00000114267 ENSMUST00000225771 Gm48600 TEC Interval_90541 chr2 31042668 31043430 + 0 NA intron (ENSMUSG00000075415.13, intron 5 of 9) protein_coding-intron (ENSMUSG00000075415.13, intron 9 of 13) 60715 ENSMUSG00000026854.16 ENSMUSG00000026854 ENSMUST00000127776 Usp20 protein_coding Interval_8492 chr1 140076225 140076524 + 0 NA Intergenic Intergenic -27345 ENSMUSG00000103691.1 ENSMUSG00000103691 ENSMUST00000195133 Gm38019 processed_pseudogene Interval_128944 chr5 116231401 116233166 + 0 NA intron (ENSMUSG00000043913.14, intron 1 of 5) protein_coding-intron (ENSMUSG00000043913.14, intron 1 of 13) -11423 ENSMUSG00000086122.1 ENSMUSG00000086122 ENSMUST00000156169 Gm14507 antisense Interval_161391 chr8 120187287 120187606 + 0 NA intron (ENSMUSG00000092329.1, intron 1 of 15) protein_coding-intron (ENSMUSG00000092329.1, intron 1 of 15) -10083 ENSMUSG00000042269.15 ENSMUSG00000042269 ENSMUST00000142478 Fam92b protein_coding Interval_133342 chr6 3512801 3513115 + 0 NA intron (ENSMUSG00000001376.17, intron 2 of 5) protein_coding-intron (ENSMUSG00000001376.17, intron 2 of 27) -25529 ENSMUSG00000044156.14 ENSMUSG00000044156 ENSMUST00000200972 Hepacam2 protein_coding Interval_21497 chr10 128922688 128923774 + 0 NA promoter-TSS (ENSMUSG00000025350.15) protein_coding-promoter-TSS (ENSMUSG00000025350.15) 293 ENSMUSG00000090247.7 ENSMUSG00000090247 ENSMUST00000143628 Bloc1s1 protein_coding Interval_13076 chr10 11175466 11176239 + 0 NA intron (ENSMUSG00000090112.8, intron 14 of 20) protein_coding-intron (ENSMUSG00000090112.8, intron 14 of 29) -29167 ENSMUSG00000090112.8 ENSMUSG00000090112 ENSMUST00000161910 Shprh protein_coding Interval_161995 chr8 124314845 124315388 + 0 NA intron (ENSMUSG00000089704.9, intron 3 of 4) protein_coding-intron (ENSMUSG00000089704.9, intron 3 of 15) -8609 ENSMUSG00000089745.1 ENSMUSG00000089745 ENSMUST00000162325 1810008B01Rik antisense Interval_34513 chr12 4841016 4841942 + 0 NA promoter-TSS (ENSMUSG00000020635.8) protein_coding-promoter-TSS (ENSMUSG00000020635.8) -44 ENSMUSG00000020635.8 ENSMUSG00000020635 ENSMUST00000219880 Fkbp1b protein_coding Interval_156977 chr8 63628715 63629017 + 0 NA Intergenic Intergenic 82923 ENSMUSG00000109999.1 ENSMUSG00000109999 ENSMUST00000209554 Gm35368 lincRNA Interval_157802 chr8 73372454 73373225 + 0 NA Intergenic Intergenic -19299 ENSMUSG00000004383.18 ENSMUSG00000004383 ENSMUST00000146249 Large1 protein_coding Interval_39833 chr12 98850910 98851541 + 0 NA intron (ENSMUSG00000051166.10, intron 17 of 43) protein_coding-intron (ENSMUSG00000051166.10, intron 17 of 40) 19412 ENSMUSG00000113102.1 ENSMUSG00000113102 ENSMUST00000221662 A930040O22Rik TEC Interval_86012 chr19 34904140 34904594 + 0 NA Intergenic Intergenic -26514 ENSMUSG00000033610.16 ENSMUSG00000033610 ENSMUST00000237577 Pank1 protein_coding Interval_144267 chr7 24133625 24134680 + 0 NA promoter-TSS (ENSMUSG00000047603.9) protein_coding-promoter-TSS (ENSMUSG00000047603.9) -76 ENSMUSG00000047603.9 ENSMUSG00000047603 ENSMUST00000056549 Zfp235 protein_coding Interval_47830 chr13 93606766 93607592 + 0 NA Intergenic Intergenic -18203 ENSMUSG00000085834.1 ENSMUSG00000085834 ENSMUST00000143025 Gm15622 antisense Interval_102744 chr3 30736824 30737365 + 0 NA Intergenic Intergenic -19128 ENSMUSG00000051860.13 ENSMUSG00000051860 ENSMUST00000192872 Samd7 protein_coding Interval_167017 chr9 64564477 64565471 + 0 NA intron (ENSMUSG00000036466.17, intron 1 of 1) protein_coding-intron (ENSMUSG00000036466.17, intron 5 of 24) 160746 ENSMUSG00000004771.12 ENSMUSG00000004771 ENSMUST00000165083 Rab11a protein_coding Interval_145894 chr7 41512027 41513489 + 0 NA Intergenic Intergenic -13341 ENSMUSG00000092592.1 ENSMUSG00000092592 ENSMUST00000094532 Gm20449 protein_coding Interval_55857 chr14 101562653 101563371 + 0 NA intron (ENSMUSG00000033083.16, intron 1 of 20) protein_coding-intron (ENSMUSG00000033083.16, intron 1 of 13) 10002 ENSMUSG00000115319.1 ENSMUSG00000115319 ENSMUST00000228293 Gm34417 processed_pseudogene Interval_159224 chr8 91908789 91909222 + 0 NA intron (ENSMUSG00000099812.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000099812.1, intron 1 of 1) 4061 ENSMUSG00000099812.1 ENSMUSG00000099812 ENSMUST00000189823 Gm28515 lincRNA Interval_138870 chr6 92768685 92769968 + 0 NA Intergenic Intergenic -58306 ENSMUSG00000048636.7 ENSMUSG00000048636 ENSMUST00000133858 A730049H05Rik protein_coding Interval_166253 chr9 57807188 57807817 + 0 NA TTS (ENSMUSG00000004661.15) protein_coding-TTS (ENSMUSG00000004661.15) -11281 ENSMUSG00000004661.15 ENSMUSG00000004661 ENSMUST00000167670 Arid3b protein_coding Interval_32478 chr11 107743094 107743612 + 0 NA intron (ENSMUSG00000020723.3, intron 1 of 3) protein_coding-intron (ENSMUSG00000020723.3, intron 1 of 3) -1274 ENSMUSG00000020723.3 ENSMUSG00000020723 ENSMUST00000134076 Cacng4 protein_coding Interval_157338 chr8 69643646 69643876 + 0 NA Intergenic Intergenic -10731 ENSMUSG00000091764.3 ENSMUSG00000091764 ENSMUST00000169125 Zfp964 protein_coding Interval_45105 chr13 52235804 52236454 + 0 NA Intergenic Intergenic 55718 ENSMUSG00000113399.1 ENSMUSG00000113399 ENSMUST00000222876 Gm48199 lincRNA Interval_31136 chr11 98357977 98359172 + 0 NA promoter-TSS (ENSMUSG00000085944.1) processed_transcript-promoter-TSS (ENSMUSG00000085944.1) 144 ENSMUSG00000018167.10 ENSMUSG00000018167 ENSMUST00000143243 Stard3 protein_coding Interval_47152 chr13 76450259 76452038 + 0 NA intron (ENSMUSG00000021596.16, intron 1 of 20) protein_coding-intron (ENSMUSG00000021596.16, intron 1 of 20) 11817 ENSMUSG00000114293.1 ENSMUSG00000114293 ENSMUST00000225003 Gm48078 processed_pseudogene Interval_166584 chr9 61093058 61093324 + 0 NA intron (ENSMUSG00000111169.1, intron 2 of 3) lincRNA-intron (ENSMUSG00000111169.1, intron 2 of 3) 12194 ENSMUSG00000111807.1 ENSMUSG00000111807 ENSMUST00000217392 4933433G08Rik lincRNA Interval_123051 chr5 29256575 29256762 + 0 NA intron (ENSMUSG00000010721.15, intron 11 of 14) protein_coding-intron (ENSMUSG00000010721.15, intron 12 of 16) 23629 ENSMUSG00000105741.1 ENSMUSG00000105741 ENSMUST00000199610 C79130 TEC Interval_122261 chr5 20772893 20773487 + 0 NA intron (ENSMUSG00000039987.15, intron 2 of 6) protein_coding-intron (ENSMUSG00000039987.15, intron 13 of 17) -32900 ENSMUSG00000082716.1 ENSMUSG00000082716 ENSMUST00000118086 Rpl31-ps5 processed_pseudogene Interval_67351 chr16 47058019 47058223 + 0 NA Intergenic Intergenic -16077 ENSMUSG00000081624.1 ENSMUSG00000081624 ENSMUST00000117218 Gm6912 processed_pseudogene Interval_105539 chr3 87512216 87512925 + 0 NA Intergenic Intergenic -13008 ENSMUSG00000003382.18 ENSMUSG00000003382 ENSMUST00000152010 Etv3 protein_coding Interval_77846 chr18 4427027 4428683 + 0 NA Intergenic Intergenic 28527 ENSMUSG00000117579.1 ENSMUSG00000117579 ENSMUST00000234374 Gm50023 lincRNA Interval_61512 chr15 82071750 82072428 + 0 NA intron (ENSMUSG00000068117.10, intron 2 of 30) protein_coding-intron (ENSMUSG00000068117.10, intron 2 of 30) 2093 ENSMUSG00000068117.10 ENSMUSG00000068117 ENSMUST00000186125 Mei1 protein_coding Interval_24695 chr11 35950539 35951111 + 0 NA intron (ENSMUSG00000018849.6, intron 1 of 22) protein_coding-intron (ENSMUSG00000018849.6, intron 1 of 22) -45229 ENSMUSG00000081571.1 ENSMUSG00000081571 ENSMUST00000117261 Gm12125 processed_pseudogene Interval_63719 chr15 103013714 103016012 + 0 NA promoter-TSS (ENSMUSG00000076010.1) miRNA-promoter-TSS (ENSMUSG00000076010.1) -47 ENSMUSG00000076010.1 ENSMUSG00000076010 ENSMUST00000102056 Mir615 miRNA Interval_59972 chr15 62462822 62463536 + 0 NA Intergenic Intergenic -104796 ENSMUSG00000115862.1 ENSMUSG00000115862 ENSMUST00000230029 Gm41333 lincRNA Interval_13657 chr10 20547946 20549661 + 0 NA promoter-TSS (ENSMUSG00000019990.15) protein_coding-promoter-TSS (ENSMUSG00000019990.15) -29035 ENSMUSG00000092051.2 ENSMUSG00000092051 ENSMUST00000166792 Gm17229 transcribed_processed_pseudogene Interval_46325 chr13 63962528 63963465 + 0 NA Intergenic Intergenic -16475 ENSMUSG00000113340.1 ENSMUSG00000113340 ENSMUST00000220900 Gm7695 processed_pseudogene Interval_23501 chr11 22985637 22985848 + 0 NA Intergenic Intergenic -3652 ENSMUSG00000098650.1 ENSMUSG00000098650 ENSMUST00000160826 Commd1b protein_coding Interval_19647 chr10 106919298 106919522 + 0 NA intron (ENSMUSG00000053825.15, intron 8 of 10) protein_coding-intron (ENSMUSG00000053825.15, intron 29 of 31) 26404 ENSMUSG00000053825.15 ENSMUSG00000053825 ENSMUST00000219024 Ppfia2 protein_coding Interval_45950 chr13 59591623 59593032 + 0 NA intron (ENSMUSG00000021555.15, intron 2 of 7) protein_coding-intron (ENSMUSG00000021555.15, intron 2 of 22) 6907 ENSMUSG00000021555.15 ENSMUSG00000021555 ENSMUST00000172118 Naa35 protein_coding Interval_93098 chr2 70126147 70128564 + 0 NA intron (ENSMUSG00000042064.13, intron 7 of 33) protein_coding-intron (ENSMUSG00000042064.13, intron 8 of 34) 44281 ENSMUSG00000042064.13 ENSMUSG00000042064 ENSMUST00000112241 Myo3b protein_coding Interval_94263 chr2 87156681 87156896 + 0 NA Intergenic Intergenic -4164 ENSMUSG00000075158.5 ENSMUSG00000075158 ENSMUST00000099860 Olfr1111 protein_coding Interval_60299 chr15 72631048 72631242 + 0 NA intron (ENSMUSG00000047921.17, intron 20 of 21) protein_coding-intron (ENSMUSG00000047921.17, intron 20 of 21) 42862 ENSMUSG00000116088.1 ENSMUSG00000116088 ENSMUST00000230426 Gm49460 antisense Interval_71427 chr17 23679285 23679743 + 0 NA promoter-TSS (ENSMUSG00000023906.3) protein_coding-promoter-TSS (ENSMUSG00000023906.3) -145 ENSMUSG00000023906.3 ENSMUSG00000023906 ENSMUST00000233364 Cldn6 protein_coding Interval_99738 chr2 164591741 164592438 + 0 NA intron (ENSMUSG00000017733.4, intron 1 of 3) protein_coding-intron (ENSMUSG00000017733.4, intron 1 of 3) 1505 ENSMUSG00000017733.4 ENSMUSG00000017733 ENSMUST00000103100 Eppin protein_coding Interval_65634 chr16 24442772 24444012 + 0 NA intron (ENSMUSG00000033306.15, intron 2 of 6) protein_coding-intron (ENSMUSG00000033306.15, intron 2 of 12) -36975 ENSMUSG00000087861.1 ENSMUSG00000087861 ENSMUST00000157236 Gm24440 snRNA Interval_24964 chr11 42109256 42110853 + 0 NA Intergenic Intergenic 72050 ENSMUSG00000010803.13 ENSMUSG00000010803 ENSMUST00000206085 Gabra1 protein_coding Interval_92711 chr2 63606278 63607727 + 0 NA Intergenic Intergenic -174808 ENSMUSG00000065837.1 ENSMUSG00000065837 ENSMUST00000083903 Gm23503 snRNA Interval_29045 chr11 80042637 80043524 + 0 NA Intergenic Intergenic 37781 ENSMUSG00000017561.16 ENSMUSG00000017561 ENSMUST00000178280 Crlf3 protein_coding Interval_21869 chr11 4854236 4855975 + 0 NA Intergenic Intergenic -5980 ENSMUSG00000009073.16 ENSMUSG00000009073 ENSMUST00000172305 Nf2 protein_coding Interval_996 chr1 13737130 13737578 + 0 NA Intergenic Intergenic 37110 ENSMUSG00000077368.1 ENSMUSG00000077368 ENSMUST00000104180 Gm26273 snoRNA Interval_127593 chr5 105671776 105673040 + 0 NA Intergenic Intergenic -58981 ENSMUSG00000046079.16 ENSMUSG00000046079 ENSMUST00000134605 Lrrc8d protein_coding Interval_131530 chr5 137764226 137765153 + 0 NA intron (ENSMUSG00000029723.16, intron 5 of 5) protein_coding-intron (ENSMUSG00000029723.16, intron 2 of 2) 6544 ENSMUSG00000029723.16 ENSMUSG00000029723 ENSMUST00000138698 Tsc22d4 protein_coding Interval_59688 chr15 57975269 57977090 + 0 NA Intergenic Intergenic -25967 ENSMUSG00000051225.9 ENSMUSG00000051225 ENSMUST00000161231 Fam83a protein_coding Interval_151702 chr7 126156497 126156719 + 0 NA intron (ENSMUSG00000000131.15, intron 1 of 3) protein_coding-intron (ENSMUSG00000000131.15, intron 6 of 23) -9037 ENSMUSG00000090559.1 ENSMUSG00000090559 ENSMUST00000165729 Gm17137 transcribed_processed_pseudogene Interval_100739 chr2 172257011 172257919 + 0 NA Intergenic Intergenic 8973 ENSMUSG00000038537.1 ENSMUSG00000038537 ENSMUST00000038532 Mc3r protein_coding Interval_16376 chr10 62571481 62571987 + 0 NA intron (ENSMUSG00000036955.16, intron 2 of 5) protein_coding-intron (ENSMUSG00000036955.16, intron 2 of 6) -3316 ENSMUSG00000036955.16 ENSMUSG00000036955 ENSMUST00000159722 Kifbp protein_coding Interval_163220 chr9 18432205 18432404 + 0 NA intron (ENSMUSG00000047508.9, intron 1 of 2) protein_coding-intron (ENSMUSG00000047508.9, intron 1 of 2) 1650 ENSMUSG00000047508.9 ENSMUSG00000047508 ENSMUST00000051008 Mbd3l2 protein_coding Interval_53666 chr14 60736321 60737606 + 0 NA intron (ENSMUSG00000021990.16, intron 1 of 9) protein_coding-intron (ENSMUSG00000021990.16, intron 4 of 12) 4057 ENSMUSG00000021990.16 ENSMUSG00000021990 ENSMUST00000162939 Spata13 protein_coding Interval_125516 chr5 67861859 67862102 + 0 NA intron (ENSMUSG00000087261.2, intron 1 of 3) antisense-intron (ENSMUSG00000087261.2, intron 1 of 2) -10902 ENSMUSG00000107206.1 ENSMUSG00000107206 ENSMUST00000200723 Gm42736 TEC Interval_61833 chr15 84500056 84500580 + 0 NA Intergenic Intergenic -53221 ENSMUSG00000062760.11 ENSMUSG00000062760 ENSMUST00000186527 Shisal1 protein_coding Interval_168153 chr9 77596267 77596825 + 0 NA Intergenic Intergenic 18832 ENSMUSG00000093211.1 ENSMUSG00000093211 ENSMUST00000175470 Gm25250 miRNA Interval_149422 chr7 98377359 98378216 + 0 NA Intergenic Intergenic -17600 ENSMUSG00000049580.12 ENSMUSG00000049580 ENSMUST00000206770 Tsku protein_coding Interval_48554 chr13 100124212 100125824 + 0 NA promoter-TSS (ENSMUSG00000021645.16) protein_coding-promoter-TSS (ENSMUSG00000021645.16) -2857 ENSMUSG00000021645.16 ENSMUSG00000021645 ENSMUST00000135355 Smn1 protein_coding Interval_140860 chr6 122415588 122416014 + 0 NA Intergenic Intergenic 1697 ENSMUSG00000107506.1 ENSMUSG00000107506 ENSMUST00000204828 Gm19254 processed_pseudogene Interval_91239 chr2 36235471 36235768 + 0 NA promoter-TSS (ENSMUSG00000047250.13) protein_coding-promoter-TSS (ENSMUSG00000047250.13) -5094 ENSMUSG00000047250.13 ENSMUSG00000047250 ENSMUST00000133777 Ptgs1 protein_coding Interval_88850 chr2 11651213 11651688 + 0 NA intron (ENSMUSG00000026770.5, intron 1 of 7) protein_coding-intron (ENSMUSG00000026770.5, intron 1 of 7) -25186 ENSMUSG00000091312.1 ENSMUSG00000091312 ENSMUST00000166779 Gm17490 protein_coding Interval_48467 chr13 99234218 99234457 + 0 NA intron (ENSMUSG00000050919.9, intron 3 of 4) protein_coding-intron (ENSMUSG00000050919.9, intron 3 of 4) 49514 ENSMUSG00000050919.9 ENSMUSG00000050919 ENSMUST00000056558 Zfp366 protein_coding Interval_103759 chr3 52400408 52401957 + 0 NA Intergenic Intergenic -24226 ENSMUSG00000103454.1 ENSMUSG00000103454 ENSMUST00000194115 Gm38098 processed_pseudogene Interval_118167 chr4 129323698 129324296 + 0 NA TTS (ENSMUSG00000057236.10) protein_coding-TTS (ENSMUSG00000057236.10) 11252 ENSMUSG00000057236.10 ENSMUSG00000057236 ENSMUST00000135585 Rbbp4 protein_coding Interval_71900 chr17 26878147 26878382 + 0 NA intron (ENSMUSG00000078838.3, intron 1 of 2) lincRNA-intron (ENSMUSG00000078838.3, intron 1 of 1) 2344 ENSMUSG00000117903.1 ENSMUSG00000117903 ENSMUST00000236791 Gm29819 processed_pseudogene Interval_168629 chr9 84495045 84495332 + 0 NA Intergenic Intergenic 71204 ENSMUSG00000099927.1 ENSMUSG00000099927 ENSMUST00000190511 Gm8226 processed_pseudogene Interval_12579 chr10 3533959 3534227 + 0 NA Intergenic Intergenic -6195 ENSMUSG00000019762.4 ENSMUSG00000019762 ENSMUST00000141745 Iyd protein_coding Interval_103077 chr3 35086457 35087129 + 0 NA Intergenic Intergenic -164142 ENSMUSG00000098862.1 ENSMUSG00000098862 ENSMUST00000183357 Mir6378 miRNA Interval_87903 chr19 57015613 57016697 + 0 NA Intergenic Intergenic -78917 ENSMUSG00000025083.18 ENSMUSG00000025083 ENSMUST00000132851 Afap1l2 protein_coding Interval_75632 chr17 69499136 69499452 + 0 NA Intergenic Intergenic -23419 ENSMUSG00000117053.1 ENSMUSG00000117053 ENSMUST00000232967 A730049N16Rik antisense Interval_25887 chr11 52339257 52341538 + 0 NA Intergenic Intergenic -33703 ENSMUSG00000020402.11 ENSMUSG00000020402 ENSMUST00000153339 Vdac1 protein_coding Interval_159085 chr8 90034717 90035204 + 0 NA Intergenic Intergenic 313171 ENSMUSG00000043668.13 ENSMUSG00000043668 ENSMUST00000176034 Tox3 protein_coding Interval_99573 chr2 163299889 163300634 + 0 NA intron (ENSMUSG00000074607.11, intron 3 of 8) protein_coding-intron (ENSMUSG00000074607.11, intron 3 of 8) 74807 ENSMUSG00000074607.11 ENSMUSG00000074607 ENSMUST00000148599 Tox2 protein_coding Interval_141504 chr6 128734702 128735173 + 0 NA Intergenic Intergenic -9707 ENSMUSG00000107866.1 ENSMUSG00000107866 ENSMUST00000203128 Gm43907 processed_pseudogene Interval_163108 chr9 15315687 15318868 + 0 NA TTS (ENSMUSG00000065265.1) snoRNA-TTS (ENSMUSG00000065265.1) 601 ENSMUSG00000065663.1 ENSMUSG00000065663 ENSMUST00000083729 Gm22579 snoRNA Interval_80379 chr18 40455007 40455567 + 0 NA intron (ENSMUSG00000051401.7, intron 2 of 2) protein_coding-intron (ENSMUSG00000051401.7, intron 1 of 1) -15550 ENSMUSG00000118315.1 ENSMUSG00000118315 ENSMUST00000237648 Gm31019 antisense Interval_133650 chr6 8046513 8046978 + 0 NA intron (ENSMUSG00000068794.7, intron 27 of 34) protein_coding-intron (ENSMUSG00000068794.7, intron 27 of 34) -63362 ENSMUSG00000096403.2 ENSMUSG00000096403 ENSMUST00000178598 Rnps1-ps processed_pseudogene Interval_158604 chr8 84709185 84709679 + 0 NA intron (ENSMUSG00000001911.16, intron 1 of 1) protein_coding-intron (ENSMUSG00000001911.16, intron 8 of 8) -1716 ENSMUSG00000001911.16 ENSMUSG00000001911 ENSMUST00000126806 Nfix protein_coding Interval_156255 chr8 46573248 46574627 + 0 NA intron (ENSMUSG00000031629.14, intron 2 of 3) protein_coding-intron (ENSMUSG00000031629.14, intron 11 of 12) 21899 ENSMUSG00000031629.14 ENSMUSG00000031629 ENSMUST00000136724 Cenpu protein_coding Interval_27656 chr11 69326133 69326889 + 0 NA TTS (ENSMUSG00000049299.14) protein_coding-TTS (ENSMUSG00000049299.14) -1355 ENSMUSG00000018470.8 ENSMUSG00000018470 ENSMUST00000134561 Kcnab3 protein_coding Interval_116080 chr4 107476321 107476905 + 0 NA intron (ENSMUSG00000034762.9, intron 1 of 9) protein_coding-intron (ENSMUSG00000034762.9, intron 2 of 10) 42041 ENSMUSG00000092723.1 ENSMUSG00000092723 ENSMUST00000174982 Gm24804 miRNA Interval_64660 chr16 13972104 13972895 + 0 NA Intergenic Intergenic -3042 ENSMUSG00000089207.1 ENSMUSG00000089207 ENSMUST00000158582 Gm26213 rRNA Interval_142426 chr6 142039978 142040902 + 0 NA Intergenic Intergenic -29026 ENSMUSG00000079263.8 ENSMUSG00000079263 ENSMUST00000111832 Gm6614 protein_coding Interval_79024 chr18 24020059 24021422 + 0 NA promoter-TSS (ENSMUSG00000051469.14) protein_coding-promoter-TSS (ENSMUSG00000051469.14) -420 ENSMUSG00000051469.14 ENSMUSG00000051469 ENSMUST00000148525 Zfp24 protein_coding Interval_171342 chr9 116535816 116536491 + 0 NA Intergenic Intergenic 204985 ENSMUSG00000110752.1 ENSMUSG00000110752 ENSMUST00000217456 D730003K21Rik lincRNA Interval_116244 chr4 109017596 109017861 + 0 NA promoter-TSS (ENSMUSG00000076444.1) miRNA-promoter-TSS (ENSMUSG00000076444.1) 73 ENSMUSG00000076444.1 ENSMUSG00000076444 ENSMUST00000103245 Mir761 miRNA Interval_43663 chr13 34741269 34742359 + 0 NA intron (ENSMUSG00000038246.7, intron 1 of 1) protein_coding-intron (ENSMUSG00000038246.7, intron 1 of 1) 2202 ENSMUSG00000038246.7 ENSMUSG00000038246 ENSMUST00000221037 Fam50b protein_coding Interval_103979 chr3 56008072 56008355 + 0 NA intron (ENSMUSG00000027799.12, intron 21 of 57) protein_coding-intron (ENSMUSG00000027799.12, intron 21 of 57) 8955 ENSMUSG00000104938.1 ENSMUSG00000104938 ENSMUST00000200303 Gm42840 TEC Interval_96040 chr2 119357798 119358399 + 0 NA Intergenic Intergenic 6869 ENSMUSG00000027313.3 ENSMUSG00000027313 ENSMUST00000028780 Chac1 protein_coding Interval_86803 chr19 43961153 43961437 + 0 NA TTS (ENSMUSG00000025196.4) protein_coding-TTS (ENSMUSG00000025196.4) 7398 ENSMUSG00000025196.4 ENSMUSG00000025196 ENSMUST00000131882 Cpn1 protein_coding Interval_39333 chr12 86787083 86787784 + 0 NA Intergenic Intergenic -22524 ENSMUSG00000088403.1 ENSMUSG00000088403 ENSMUST00000157778 Gm25888 misc_RNA Interval_115252 chr4 94880139 94880340 + 0 NA Intergenic Intergenic 48604 ENSMUSG00000028575.11 ENSMUSG00000028575 ENSMUST00000030309 Eqtn protein_coding Interval_948 chr1 13347218 13347495 + 0 NA exon (ENSMUSG00000103085.1, exon 1 of 1) TEC-exon (ENSMUSG00000103085.1, exon 1 of 1) 848 ENSMUSG00000103085.1 ENSMUSG00000103085 ENSMUST00000195506 Gm38120 TEC Interval_28541 chr11 76612408 76613027 + 0 NA intron (ENSMUSG00000017631.19, intron 1 of 22) protein_coding-intron (ENSMUSG00000017631.19, intron 1 of 3) 10841 ENSMUSG00000017631.19 ENSMUSG00000017631 ENSMUST00000137261 Abr protein_coding Interval_16175 chr10 61225796 61226025 + 0 NA intron (ENSMUSG00000059901.12, intron 7 of 21) protein_coding-intron (ENSMUSG00000059901.12, intron 7 of 21) 47332 ENSMUSG00000059901.12 ENSMUSG00000059901 ENSMUST00000120336 Adamts14 protein_coding Interval_32489 chr11 107863994 107864329 + 0 NA Intergenic Intergenic 12416 ENSMUSG00000098991.1 ENSMUSG00000098991 ENSMUST00000184579 Gm27595 rRNA Interval_63994 chr16 5112350 5112585 + 0 NA intron (ENSMUSG00000039457.4, intron 2 of 15) protein_coding-intron (ENSMUSG00000039457.4, intron 2 of 21) 19943 ENSMUSG00000039457.4 ENSMUSG00000039457 ENSMUST00000230554 Ppl protein_coding Interval_10505 chr1 171372792 171374159 + 0 NA intron (ENSMUSG00000006411.12, intron 2 of 9) protein_coding-intron (ENSMUSG00000006411.12, intron 1 of 8) 3376 ENSMUSG00000006411.12 ENSMUSG00000006411 ENSMUST00000094325 Nectin4 protein_coding Interval_120808 chr4 150758796 150759612 + 0 NA Intergenic Intergenic -66529 ENSMUSG00000085097.1 ENSMUSG00000085097 ENSMUST00000133196 Gm13049 lincRNA Interval_152305 chr7 131578136 131578344 + 0 NA intron (ENSMUSG00000030849.18, intron 2 of 6) protein_coding-intron (ENSMUSG00000030849.18, intron 2 of 6) 17833 ENSMUSG00000066979.6 ENSMUSG00000066979 ENSMUST00000207442 Bub3 protein_coding Interval_132655 chr5 146980677 146982030 + 0 NA Intergenic Intergenic -17553 ENSMUSG00000016510.11 ENSMUSG00000016510 ENSMUST00000140526 Mtif3 protein_coding Interval_125190 chr5 65227285 65227507 + 0 NA intron (ENSMUSG00000037890.13, intron 15 of 25) protein_coding-intron (ENSMUSG00000037890.13, intron 15 of 36) 27679 ENSMUSG00000037890.13 ENSMUSG00000037890 ENSMUST00000203554 Wdr19 protein_coding Interval_59029 chr15 41846210 41846406 + 0 NA intron (ENSMUSG00000022307.16, intron 2 of 3) protein_coding-intron (ENSMUSG00000022307.16, intron 9 of 14) 15315 ENSMUSG00000022307.16 ENSMUSG00000022307 ENSMUST00000230126 Oxr1 protein_coding Interval_71152 chr17 20330196 20330533 + 0 NA exon (ENSMUSG00000093469.1, exon 2 of 2) unprocessed_pseudogene-exon (ENSMUSG00000093469.1, exon 2 of 2) 6044 ENSMUSG00000093469.1 ENSMUSG00000093469 ENSMUST00000175850 Vmn2r-ps127 unprocessed_pseudogene Interval_111453 chr4 21754420 21755955 + 0 NA intron (ENSMUSG00000028252.20, intron 11 of 11) protein_coding-intron (ENSMUSG00000028252.20, intron 11 of 11) -11969 ENSMUSG00000040455.17 ENSMUSG00000040455 ENSMUST00000148647 Usp45 protein_coding Interval_65331 chr16 21618685 21618980 + 0 NA intron (ENSMUSG00000033653.18, intron 2 of 3) protein_coding-intron (ENSMUSG00000033653.18, intron 44 of 45) 75748 ENSMUSG00000043391.10 ENSMUSG00000043391 ENSMUST00000232634 2510009E07Rik protein_coding Interval_83096 chr18 81239512 81240106 + 0 NA Intergenic Intergenic -3743 ENSMUSG00000097181.1 ENSMUSG00000097181 ENSMUST00000181204 4930594M17Rik lincRNA Interval_109333 chr3 139045561 139045772 + 0 NA intron (ENSMUSG00000028149.12, intron 2 of 12) protein_coding-intron (ENSMUSG00000028149.12, intron 2 of 13) 29482 ENSMUSG00000028149.12 ENSMUSG00000028149 ENSMUST00000195953 Rap1gds1 protein_coding Interval_164161 chr9 32089038 32089390 + 0 NA Intergenic Intergenic 10933 ENSMUSG00000110840.1 ENSMUSG00000110840 ENSMUST00000214707 Gm47496 processed_pseudogene Interval_146740 chr7 49837196 49837644 + 0 NA intron (ENSMUSG00000030505.17, intron 13 of 15) protein_coding-intron (ENSMUSG00000030505.17, intron 13 of 15) 23218 ENSMUSG00000109154.1 ENSMUSG00000109154 ENSMUST00000208559 Gm44822 TEC Interval_58683 chr15 37022602 37023648 + 0 NA intron (ENSMUSG00000097259.2, intron 3 of 6) antisense-intron (ENSMUSG00000097259.2, intron 3 of 6) 15542 ENSMUSG00000097259.2 ENSMUSG00000097259 ENSMUST00000227544 Gm26766 antisense Interval_142796 chr6 145770078 145771211 + 0 NA intron (ENSMUSG00000030259.12, intron 1 of 2) protein_coding-intron (ENSMUSG00000030259.12, intron 1 of 4) 20073 ENSMUSG00000030259.12 ENSMUSG00000030259 ENSMUST00000058538 Rassf8 protein_coding Interval_34511 chr12 4826943 4827504 + 0 NA TTS (ENSMUSG00000037361.8) protein_coding-TTS (ENSMUSG00000037361.8) 9662 ENSMUSG00000037361.8 ENSMUSG00000037361 ENSMUST00000218650 Sf3b6 protein_coding Interval_120159 chr4 143114532 143115119 + 0 NA intron (ENSMUSG00000057637.13, intron 8 of 9) protein_coding-intron (ENSMUSG00000057637.13, intron 8 of 9) 21337 ENSMUSG00000106597.1 ENSMUSG00000106597 ENSMUST00000197026 Mir7021 miRNA Interval_29994 chr11 88593551 88595432 + 0 NA intron (ENSMUSG00000069769.13, intron 5 of 5) protein_coding-intron (ENSMUSG00000069769.13, intron 5 of 13) -4344 ENSMUSG00000069769.13 ENSMUSG00000069769 ENSMUST00000126293 Msi2 protein_coding Interval_167495 chr9 70023553 70025881 + 0 NA Intergenic Intergenic 5669 ENSMUSG00000033543.17 ENSMUSG00000033543 ENSMUST00000148889 Gtf2a2 protein_coding Interval_72103 chr17 28052188 28052499 + 0 NA TTS (ENSMUSG00000024219.16) protein_coding-TTS (ENSMUSG00000024219.16) 11568 ENSMUSG00000024219.16 ENSMUSG00000024219 ENSMUST00000232769 Anks1 protein_coding Interval_88462 chr2 5326733 5327711 + 0 NA intron (ENSMUSG00000039145.16, intron 6 of 10) protein_coding-intron (ENSMUSG00000039145.16, intron 6 of 10) 43572 ENSMUSG00000080820.1 ENSMUSG00000080820 ENSMUST00000117204 Gm13197 processed_pseudogene Interval_171687 chr9 120163231 120164298 + 0 NA intron (ENSMUSG00000032517.16, intron 2 of 2) protein_coding-intron (ENSMUSG00000032517.16, intron 2 of 3) 14047 ENSMUSG00000032517.16 ENSMUSG00000032517 ENSMUST00000214008 Mobp protein_coding Interval_18599 chr10 88335677 88337083 + 0 NA intron (ENSMUSG00000020057.2, intron 4 of 6) protein_coding-intron (ENSMUSG00000020057.2, intron 4 of 6) 20616 ENSMUSG00000020057.2 ENSMUSG00000020057 ENSMUST00000138159 Dram1 protein_coding Interval_141109 chr6 125046399 125047300 + 0 NA promoter-TSS (ENSMUSG00000030330.15) protein_coding-promoter-TSS (ENSMUSG00000030330.15) 2895 ENSMUSG00000030330.15 ENSMUSG00000030330 ENSMUST00000146229 Ing4 protein_coding Interval_166552 chr9 60836343 60836630 + 0 NA intron (ENSMUSG00000052143.8, intron 1 of 1) protein_coding-intron (ENSMUSG00000034485.10, intron 1 of 18) 1713 ENSMUSG00000052143.8 ENSMUSG00000052143 ENSMUST00000063858 Gm9869 antisense Interval_149600 chr7 99965092 99967253 + 0 NA promoter-TSS (ENSMUSG00000058761.5) protein_coding-promoter-TSS (ENSMUSG00000058761.5) -438 ENSMUSG00000058761.5 ENSMUSG00000058761 ENSMUST00000174264 Rnf169 protein_coding Interval_98572 chr2 153327018 153327188 + 0 NA intron (ENSMUSG00000027475.9, intron 7 of 8) protein_coding-intron (ENSMUSG00000027475.9, intron 7 of 8) -18726 ENSMUSG00000042548.14 ENSMUSG00000042548 ENSMUST00000138571 Asxl1 protein_coding Interval_105669 chr3 88477796 88478070 + 0 NA Intergenic Intergenic 3349 ENSMUSG00000103304.1 ENSMUSG00000103304 ENSMUST00000193850 Gm5979 unprocessed_pseudogene Interval_105945 chr3 90224296 90225912 + 0 NA intron (ENSMUSG00000027935.14, intron 7 of 7) protein_coding-intron (ENSMUSG00000027935.14, intron 7 of 7) -6530 ENSMUSG00000027937.15 ENSMUSG00000027937 ENSMUST00000123839 Jtb protein_coding Interval_101674 chr3 8856854 8857578 + 0 NA intron (ENSMUSG00000040269.5, intron 2 of 2) protein_coding-intron (ENSMUSG00000040269.5, intron 2 of 2) -23983 ENSMUSG00000081594.1 ENSMUSG00000081594 ENSMUST00000120582 Gm15467 processed_pseudogene Interval_24694 chr11 35948148 35949002 + 0 NA intron (ENSMUSG00000018849.6, intron 1 of 22) protein_coding-intron (ENSMUSG00000018849.6, intron 1 of 22) -47479 ENSMUSG00000081571.1 ENSMUSG00000081571 ENSMUST00000117261 Gm12125 processed_pseudogene Interval_154410 chr8 15840675 15841086 + 0 NA Intergenic Intergenic -36784 ENSMUSG00000109757.1 ENSMUSG00000109757 ENSMUST00000211639 Gm7128 processed_pseudogene Interval_72673 chr17 31478135 31480083 + 0 NA Intergenic Intergenic 8260 ENSMUSG00000118390.1 ENSMUSG00000118390 ENSMUST00000237599 Gm50102 TEC Interval_15030 chr10 42057002 42058518 + 0 NA Intergenic Intergenic -2454 ENSMUSG00000085666.3 ENSMUSG00000085666 ENSMUST00000121229 Tdg-ps2 processed_pseudogene Interval_29446 chr11 84052792 84054158 + 0 NA intron (ENSMUSG00000018648.15, intron 1 of 2) protein_coding-intron (ENSMUSG00000018648.15, intron 2 of 3) 15104 ENSMUSG00000018648.15 ENSMUSG00000018648 ENSMUST00000138208 Dusp14 protein_coding Interval_8971 chr1 152817138 152818059 + 0 NA intron (ENSMUSG00000026480.12, intron 3 of 4) protein_coding-intron (ENSMUSG00000026480.12, intron 3 of 14) 9761 ENSMUSG00000026480.12 ENSMUSG00000026480 ENSMUST00000187235 Ncf2 protein_coding Interval_97958 chr2 146184506 146184729 + 0 NA intron (ENSMUSG00000037143.17, intron 9 of 10) protein_coding-intron (ENSMUSG00000037143.17, intron 25 of 26) -29996 ENSMUSG00000037143.17 ENSMUSG00000037143 ENSMUST00000167179 Cfap61 protein_coding Interval_162003 chr8 124370703 124371555 + 0 NA TTS (ENSMUSG00000050751.14) protein_coding-TTS (ENSMUSG00000050751.14) 13891 ENSMUSG00000064664.1 ENSMUSG00000064664 ENSMUST00000082730 Gm24459 snRNA Interval_26012 chr11 53469984 53470550 + 0 NA exon (ENSMUSG00000049427.2, exon 1 of 1) TEC-exon (ENSMUSG00000049427.2, exon 1 of 1) 212 ENSMUSG00000049427.2 ENSMUSG00000049427 ENSMUST00000057722 Gm9837 TEC Interval_149133 chr7 94432570 94432815 + 0 NA intron (ENSMUSG00000108532.1, intron 2 of 2) lincRNA-intron (ENSMUSG00000108532.1, intron 2 of 2) -42888 ENSMUSG00000108516.1 ENSMUSG00000108516 ENSMUST00000205948 Gm44602 processed_pseudogene Interval_156107 chr8 44788555 44788768 + 0 NA Intergenic Intergenic 146498 ENSMUSG00000110409.1 ENSMUSG00000110409 ENSMUST00000211534 Gm9908 bidirectional_promoter_lncRNA Interval_83124 chr18 81720456 81720753 + 0 NA Intergenic Intergenic -1585 ENSMUSG00000118073.1 ENSMUSG00000118073 ENSMUST00000235735 Gm50291 lincRNA Interval_25719 chr11 51084089 51085432 + 0 NA promoter-TSS (ENSMUSG00000072982.1) lincRNA-promoter-TSS (ENSMUSG00000072982.1) -327 ENSMUSG00000072982.1 ENSMUSG00000072982 ENSMUST00000101255 9230009I02Rik lincRNA Interval_61200 chr15 79935912 79936349 + 0 NA intron (ENSMUSG00000053411.16, intron 1 of 5) protein_coding-intron (ENSMUSG00000053411.16, intron 1 of 5) -2300 ENSMUSG00000053411.16 ENSMUSG00000053411 ENSMUST00000177061 Cbx7 protein_coding Interval_62770 chr15 96755613 96755829 + 0 NA Intergenic Intergenic 11357 ENSMUSG00000095638.2 ENSMUSG00000095638 ENSMUST00000177677 Gm8888 processed_pseudogene Interval_150511 chr7 111563442 111563835 + 0 NA intron (ENSMUSG00000038296.14, intron 3 of 10) protein_coding-intron (ENSMUSG00000038296.14, intron 3 of 10) -176306 ENSMUSG00000109867.1 ENSMUSG00000109867 ENSMUST00000209530 Gm5338 processed_pseudogene Interval_146064 chr7 43619344 43619597 + 0 NA Intergenic Intergenic 12261 ENSMUSG00000055102.15 ENSMUSG00000055102 ENSMUST00000116324 Zfp819 protein_coding Interval_41076 chr12 111027958 111029350 + 0 NA Intergenic Intergenic -10252 ENSMUSG00000113597.1 ENSMUSG00000113597 ENSMUST00000223165 Gm48631 TEC Interval_82420 chr18 73869653 73869885 + 0 NA intron (ENSMUSG00000064036.15, intron 1 of 1) protein_coding-intron (ENSMUSG00000064036.15, intron 2 of 7) 10382 ENSMUSG00000064036.15 ENSMUSG00000064036 ENSMUST00000134847 Mro protein_coding Interval_153953 chr8 11468974 11469511 + 0 NA intron (ENSMUSG00000031504.6, intron 1 of 1) protein_coding-intron (ENSMUSG00000031504.6, intron 1 of 1) -8687 ENSMUSG00000096957.1 ENSMUSG00000096957 ENSMUST00000180408 E230013L22Rik bidirectional_promoter_lncRNA Interval_39541 chr12 89686759 89686982 + 0 NA intron (ENSMUSG00000066392.12, intron 13 of 18) protein_coding-intron (ENSMUSG00000066392.12, intron 14 of 19) 31147 ENSMUSG00000114153.1 ENSMUSG00000114153 ENSMUST00000222398 Gm48692 TEC Interval_76346 chr17 79326815 79327491 + 0 NA Intergenic Intergenic 25854 ENSMUSG00000036533.9 ENSMUSG00000036533 ENSMUST00000233363 Cdc42ep3 protein_coding Interval_72984 chr17 33968263 33969761 + 0 NA Intergenic Intergenic 7264 ENSMUSG00000024319.18 ENSMUSG00000024319 ENSMUST00000234673 Vps52 protein_coding Interval_93699 chr2 75977559 75978284 + 0 NA TTS (ENSMUSG00000075271.4) protein_coding-TTS (ENSMUSG00000075271.4) 249 ENSMUSG00000075272.4 ENSMUSG00000075272 ENSMUST00000099995 Ttc30a2 protein_coding Interval_49479 chr13 112343145 112343440 + 0 NA intron (ENSMUSG00000049985.15, intron 6 of 7) protein_coding-intron (ENSMUSG00000049985.15, intron 5 of 10) 24553 ENSMUSG00000114536.1 ENSMUSG00000114536 ENSMUST00000224393 Gm48837 antisense Interval_2817 chr1 45824646 45825546 + 0 NA Intergenic Intergenic 2538 ENSMUSG00000025995.16 ENSMUSG00000025995 ENSMUST00000186651 Wdr75 protein_coding Interval_150059 chr7 105480403 105482795 + 0 NA promoter-TSS (ENSMUSG00000109735.1) TEC-promoter-TSS (ENSMUSG00000109735.1) -328 ENSMUSG00000109735.1 ENSMUSG00000109735 ENSMUST00000210380 Gm45667 TEC Interval_136992 chr6 65748719 65749085 + 0 NA Intergenic Intergenic -9034 ENSMUSG00000082115.2 ENSMUSG00000082115 ENSMUST00000119894 Gm15490 processed_pseudogene Interval_55957 chr14 103185667 103185933 + 0 NA intron (ENSMUSG00000033004.16, intron 49 of 84) protein_coding-intron (ENSMUSG00000033004.16, intron 49 of 84) -86294 ENSMUSG00000022124.15 ENSMUSG00000022124 ENSMUST00000123043 Fbxl3 protein_coding Interval_41392 chr12 113250284 113250905 + 0 NA Intergenic Intergenic 9642 ENSMUSG00000095079.6 ENSMUSG00000095079 ENSMUST00000178282 Igha IG_C_gene Interval_39922 chr12 99777095 99779259 + 0 NA intron (ENSMUSG00000021176.6, intron 6 of 6) protein_coding-intron (ENSMUSG00000021176.6, intron 5 of 5) -15923 ENSMUSG00000113877.1 ENSMUSG00000113877 ENSMUST00000220762 Gm47208 TEC Interval_56964 chr14 124222604 124223047 + 0 NA intron (ENSMUSG00000025551.13, intron 1 of 4) protein_coding-intron (ENSMUSG00000025551.13, intron 1 of 4) -175866 ENSMUSG00000115472.1 ENSMUSG00000115472 ENSMUST00000228023 Gm49070 processed_pseudogene Interval_156571 chr8 52343216 52343564 + 0 NA Intergenic Intergenic -6285 ENSMUSG00000064682.1 ENSMUSG00000064682 ENSMUST00000082748 Gm25813 snRNA Interval_40115 chr12 101667486 101667723 + 0 NA intron (ENSMUSG00000021187.14, intron 8 of 11) protein_coding-intron (ENSMUSG00000021187.14, intron 8 of 12) 21418 ENSMUSG00000090152.1 ENSMUSG00000090152 ENSMUST00000162999 Gm16285 processed_pseudogene Interval_16112 chr10 60800125 60801807 + 0 NA intron (ENSMUSG00000020099.8, intron 1 of 15) protein_coding-intron (ENSMUSG00000020099.8, intron 1 of 16) 13357 ENSMUSG00000112592.1 ENSMUSG00000112592 ENSMUST00000218180 Gm19972 TEC Interval_151604 chr7 125085438 125085680 + 0 NA Intergenic Intergenic 10208 ENSMUSG00000108799.1 ENSMUSG00000108799 ENSMUST00000206310 Glud-ps processed_pseudogene Interval_97980 chr2 146379930 146380129 + 0 NA intron (ENSMUSG00000037110.20, intron 25 of 41) protein_coding-intron (ENSMUSG00000037110.20, intron 24 of 40) 74482 ENSMUSG00000042938.8 ENSMUSG00000042938 ENSMUST00000122417 Gm14117 processed_pseudogene Interval_96711 chr2 127335291 127336882 + 0 NA promoter-TSS (ENSMUSG00000027368.6) protein_coding-promoter-TSS (ENSMUSG00000027368.6) -524 ENSMUSG00000027368.6 ENSMUSG00000027368 ENSMUST00000146479 Dusp2 protein_coding Interval_123088 chr5 29568901 29570086 + 0 NA promoter-TSS (ENSMUSG00000039000.8) protein_coding-promoter-TSS (ENSMUSG00000039000.8) 31340 ENSMUSG00000078182.4 ENSMUSG00000078182 ENSMUST00000075518 Gm6083 processed_pseudogene Interval_27082 chr11 62750322 62751488 + 0 NA exon (ENSMUSG00000084020.3, exon 1 of 1) processed_pseudogene-exon (ENSMUSG00000084020.3, exon 1 of 1) 375 ENSMUSG00000084020.3 ENSMUSG00000084020 ENSMUST00000117937 Wsb2-ps processed_pseudogene Interval_145713 chr7 37607920 37608135 + 0 NA intron (ENSMUSG00000043456.17, intron 3 of 3) protein_coding-intron (ENSMUSG00000043456.17, intron 3 of 5) -39637 ENSMUSG00000043456.17 ENSMUSG00000043456 ENSMUST00000206332 Zfp536 protein_coding Interval_96065 chr2 119546945 119548100 + 0 NA promoter-TSS (ENSMUSG00000014077.13) protein_coding-promoter-TSS (ENSMUSG00000014077.13) -290 ENSMUSG00000014077.13 ENSMUSG00000014077 ENSMUST00000137585 Chp1 protein_coding Interval_54163 chr14 65837044 65837938 + 0 NA intron (ENSMUSG00000022035.6, intron 1 of 1) protein_coding-intron (ENSMUSG00000022035.6, intron 1 of 8) 131 ENSMUSG00000022035.6 ENSMUSG00000022035 ENSMUST00000226027 Ccdc25 protein_coding Interval_37586 chr12 70096532 70097617 + 0 NA intron (ENSMUSG00000021068.17, intron 3 of 30) protein_coding-intron (ENSMUSG00000021068.17, intron 3 of 29) -6457 ENSMUSG00000021068.17 ENSMUSG00000021068 ENSMUST00000239242 Nin protein_coding Interval_123155 chr5 30172574 30173797 + 0 NA intron (ENSMUSG00000059447.13, intron 6 of 8) protein_coding-intron (ENSMUSG00000059447.13, intron 7 of 15) 2446 ENSMUSG00000088113.1 ENSMUSG00000088113 ENSMUST00000157488 Mir1960 miRNA Interval_31468 chr11 100842197 100842618 + 0 NA intron (ENSMUSG00000020919.11, intron 1 of 5) protein_coding-intron (ENSMUSG00000020919.11, intron 1 of 18) 8131 ENSMUSG00000020919.11 ENSMUSG00000020919 ENSMUST00000126266 Stat5b protein_coding Interval_73061 chr17 34543182 34544059 + 0 NA intron (ENSMUSG00000061728.5, intron 1 of 8) unprocessed_pseudogene-intron (ENSMUSG00000061728.5, intron 1 of 8) 4031 ENSMUSG00000061728.5 ENSMUSG00000061728 ENSMUST00000023469 Btnl7-ps unprocessed_pseudogene Interval_17552 chr10 77688725 77688945 + 0 NA intron (ENSMUSG00000069581.12, intron 1 of 11) protein_coding-intron (ENSMUSG00000069581.12, intron 1 of 11) 1922 ENSMUSG00000095970.1 ENSMUSG00000095970 ENSMUST00000180297 Gm19402 protein_coding Interval_126585 chr5 90402123 90403849 + 0 NA Intergenic Intergenic 5713 ENSMUSG00000106725.1 ENSMUSG00000106725 ENSMUST00000201590 Gm43363 TEC Interval_109728 chr3 146352191 146352504 + 0 NA Intergenic Intergenic 26597 ENSMUSG00000105602.1 ENSMUSG00000105602 ENSMUST00000197639 Gm10636 lincRNA Interval_129281 chr5 118650502 118651468 + 0 NA intron (ENSMUSG00000018076.12, intron 2 of 4) protein_coding-intron (ENSMUSG00000018076.12, intron 2 of 30) 6612 ENSMUSG00000107116.1 ENSMUSG00000107116 ENSMUST00000202545 Gm43274 TEC Interval_72653 chr17 31325518 31327165 + 0 NA TTS (ENSMUSG00000024036.16) protein_coding-TTS (ENSMUSG00000024036.16) -7276 ENSMUSG00000024036.16 ENSMUSG00000024036 ENSMUST00000235220 Slc37a1 protein_coding Interval_96882 chr2 129206541 129207353 + 0 NA promoter-TSS (ENSMUSG00000027397.14) protein_coding-promoter-TSS (ENSMUSG00000027397.14) -7753 ENSMUSG00000103009.1 ENSMUSG00000103009 ENSMUST00000192413 Gm4430 TEC Interval_108349 chr3 124613396 124613660 + 0 NA Intergenic Intergenic -24371 ENSMUSG00000106009.1 ENSMUSG00000106009 ENSMUST00000196790 Gm9379 processed_pseudogene Interval_66576 chr16 35252789 35253597 + 0 NA exon (ENSMUSG00000022840.9, exon 3 of 21) protein_coding-exon (ENSMUSG00000022840.9, exon 3 of 21) -17469 ENSMUSG00000022840.9 ENSMUSG00000022840 ENSMUST00000232470 Adcy5 protein_coding Interval_136569 chr6 55781062 55781737 + 0 NA Intergenic Intergenic 96828 ENSMUSG00000108063.1 ENSMUSG00000108063 ENSMUST00000203099 Gm3279 lincRNA Interval_107024 chr3 103032491 103032711 + 0 NA intron (ENSMUSG00000068823.10, intron 1 of 6) protein_coding-intron (ENSMUSG00000068823.10, intron 2 of 19) -7398 ENSMUSG00000068823.10 ENSMUSG00000068823 ENSMUST00000197844 Csde1 protein_coding Interval_130961 chr5 134277104 134278383 + 0 NA intron (ENSMUSG00000060261.15, intron 9 of 33) protein_coding-intron (ENSMUSG00000060261.15, intron 9 of 34) -7007 ENSMUSG00000107000.1 ENSMUSG00000107000 ENSMUST00000201715 Gm43481 TEC Interval_111732 chr4 26938302 26938520 + 0 NA Intergenic Intergenic 188098 ENSMUSG00000083447.1 ENSMUSG00000083447 ENSMUST00000120562 Gm11904 processed_pseudogene Interval_52796 chr14 50438826 50439116 + 0 NA Intergenic Intergenic -6574 ENSMUSG00000095917.2 ENSMUSG00000095917 ENSMUST00000089838 Olfr740 protein_coding Interval_164980 chr9 43583577 43583820 + 0 NA Intergenic Intergenic -24486 ENSMUSG00000110988.1 ENSMUSG00000110988 ENSMUST00000214500 Gm29909 lincRNA Interval_216 KQ030494.1 502651 502893 + 0 NA NA NA NA NA Interval_22411 chr11 9793346 9795216 + 0 NA Intergenic Intergenic -56660 ENSMUSG00000081629.1 ENSMUSG00000081629 ENSMUST00000117907 Eif3s6-ps1 processed_pseudogene Interval_125209 chr5 65367453 65369951 + 0 NA intron (ENSMUSG00000029195.10, intron 1 of 3) protein_coding-intron (ENSMUSG00000029195.10, intron 1 of 4) 20294 ENSMUSG00000029195.10 ENSMUSG00000029195 ENSMUST00000205084 Klb protein_coding Interval_23870 chr11 27352595 27353141 + 0 NA Intergenic Intergenic -33890 ENSMUSG00000088438.1 ENSMUSG00000088438 ENSMUST00000157813 Gm25387 snoRNA Interval_63902 chr16 4474772 4475850 + 0 NA Intergenic Intergenic -54813 ENSMUSG00000005580.11 ENSMUSG00000005580 ENSMUST00000005719 Adcy9 protein_coding Interval_173250 chrX 75231148 75232083 + 0 NA intron (ENSMUSG00000031196.13, intron 21 of 24) protein_coding-intron (ENSMUSG00000031196.13, intron 22 of 25) -1448 ENSMUSG00000083736.1 ENSMUSG00000083736 ENSMUST00000121667 Gm6039 processed_pseudogene Interval_116237 chr4 108963448 108963973 + 0 NA intron (ENSMUSG00000086483.1, intron 1 of 5) antisense-intron (ENSMUSG00000086483.1, intron 1 of 5) 8367 ENSMUSG00000086483.1 ENSMUSG00000086483 ENSMUST00000140919 8030443G20Rik antisense Interval_88809 chr2 11339030 11339362 + 0 NA promoter-TSS (ENSMUSG00000086006.2) lincRNA-promoter-TSS (ENSMUSG00000086006.2) -292 ENSMUSG00000086006.2 ENSMUSG00000086006 ENSMUST00000131188 Gm13293 lincRNA Interval_64513 chr16 12945505 12946475 + 0 NA promoter-TSS (ENSMUSG00000116520.1) lincRNA-promoter-TSS (ENSMUSG00000116520.1) -55 ENSMUSG00000116520.1 ENSMUSG00000116520 ENSMUST00000230696 4930414F18Rik lincRNA Interval_148301 chr7 80377574 80378300 + 0 NA exon (ENSMUSG00000053158.10, exon 19 of 19) protein_coding-exon (ENSMUSG00000053158.10, exon 19 of 19) 9934 ENSMUSG00000053158.10 ENSMUSG00000053158 ENSMUST00000206271 Fes protein_coding Interval_74902 chr17 57190114 57190463 + 0 NA exon (ENSMUSG00000005824.7, exon 4 of 4) protein_coding-exon (ENSMUSG00000005824.7, exon 4 of 4) 3889 ENSMUSG00000005824.7 ENSMUSG00000005824 ENSMUST00000005976 Tnfsf14 protein_coding Interval_30989 chr11 97607041 97607649 + 0 NA intron (ENSMUSG00000085860.1, intron 1 of 3) processed_transcript-intron (ENSMUSG00000085860.1, intron 1 of 3) -7637 ENSMUSG00000085860.1 ENSMUSG00000085860 ENSMUST00000145262 2410003L11Rik processed_transcript Interval_153752 chr8 6766432 6766646 + 0 NA Intergenic Intergenic 64439 ENSMUSG00000109457.1 ENSMUSG00000109457 ENSMUST00000208756 Gm44909 processed_pseudogene Interval_143824 chr7 16517377 16518572 + 0 NA intron (ENSMUSG00000058230.12, intron 4 of 7) protein_coding-intron (ENSMUSG00000058230.12, intron 3 of 6) -2836 ENSMUSG00000101135.1 ENSMUSG00000101135 ENSMUST00000191109 Gm17981 processed_pseudogene Interval_69176 chr16 91129607 91130448 + 0 NA Intergenic Intergenic 3402 ENSMUSG00000116981.1 ENSMUSG00000116981 ENSMUST00000231448 Gm49611 processed_pseudogene Interval_161025 chr8 116992859 116994291 + 0 NA promoter-TSS (ENSMUSG00000034424.5) protein_coding-promoter-TSS (ENSMUSG00000034424.5) -2214 ENSMUSG00000034424.5 ENSMUSG00000034424 ENSMUST00000162548 Gcsh protein_coding Interval_65576 chr16 23504196 23504852 + 0 NA intron (ENSMUSG00000022887.9, intron 2 of 8) protein_coding-intron (ENSMUSG00000022887.9, intron 2 of 15) -9746 ENSMUSG00000116481.1 ENSMUSG00000116481 ENSMUST00000229821 Gm49514 processed_pseudogene Interval_86431 chr19 40428884 40429340 + 0 NA intron (ENSMUSG00000025006.18, intron 1 of 21) protein_coding-intron (ENSMUSG00000025006.18, intron 2 of 3) -52238 ENSMUSG00000025006.18 ENSMUSG00000025006 ENSMUST00000225293 Sorbs1 protein_coding Interval_42670 chr13 17830758 17831108 + 0 NA Intergenic Intergenic 9987 ENSMUSG00000081285.2 ENSMUSG00000081285 ENSMUST00000118792 Gm18859 processed_pseudogene Interval_153893 chr8 10805831 10806107 + 0 NA Intergenic Intergenic 3159 ENSMUSG00000096258.2 ENSMUSG00000096258 ENSMUST00000179126 Rps16-ps3 processed_pseudogene Interval_17097 chr10 71339298 71339728 + 0 NA intron (ENSMUSG00000037710.8, intron 1 of 2) protein_coding-intron (ENSMUSG00000037710.8, intron 1 of 2) 5441 ENSMUSG00000037710.8 ENSMUSG00000037710 ENSMUST00000045887 Cisd1 protein_coding Interval_64769 chr16 15593968 15595310 + 0 NA promoter-TSS (ENSMUSG00000022674.15) protein_coding-promoter-TSS (ENSMUSG00000022674.15) 1134 ENSMUSG00000022674.15 ENSMUSG00000022674 ENSMUST00000229244 Ube2v2 protein_coding Interval_100692 chr2 171649114 171649322 + 0 NA Intergenic Intergenic 312913 ENSMUSG00000086823.7 ENSMUSG00000086823 ENSMUST00000125465 1700028P15Rik processed_transcript Interval_132674 chr5 147076164 147077972 + 0 NA promoter-TSS (ENSMUSG00000016520.7) protein_coding-promoter-TSS (ENSMUSG00000016520.7) -496 ENSMUSG00000029642.11 ENSMUSG00000029642 ENSMUST00000196288 Polr1d protein_coding Interval_77601 chr17 92786269 92786864 + 0 NA Intergenic Intergenic -67490 ENSMUSG00000117625.1 ENSMUSG00000117625 ENSMUST00000234136 Gm21018 processed_pseudogene Interval_156656 chr8 56535496 56535817 + 0 NA intron (ENSMUSG00000038215.15, intron 6 of 9) protein_coding-intron (ENSMUSG00000038215.15, intron 8 of 10) -1081 ENSMUSG00000038215.15 ENSMUSG00000038215 ENSMUST00000126830 Cep44 protein_coding Interval_99472 chr2 161949380 161950488 + 0 NA intron (ENSMUSG00000053141.16, intron 7 of 29) protein_coding-intron (ENSMUSG00000053141.16, intron 7 of 30) -149779 ENSMUSG00000053141.16 ENSMUSG00000053141 ENSMUST00000129015 Ptprt protein_coding Interval_138077 chr6 85010111 85011231 + 0 NA intron (ENSMUSG00000033769.16, intron 1 of 13) protein_coding-intron (ENSMUSG00000033769.16, intron 2 of 16) -51903 ENSMUSG00000107629.1 ENSMUSG00000107629 ENSMUST00000203336 Gm44011 processed_pseudogene Interval_72848 chr17 32610100 32610690 + 0 NA Intergenic Intergenic 7921 ENSMUSG00000117479.1 ENSMUSG00000117479 ENSMUST00000234119 Gm50038 unprocessed_pseudogene Interval_154752 chr8 23123083 23123852 + 0 NA exon (ENSMUSG00000031543.18, exon 2 of 2) protein_coding-exon (ENSMUSG00000031543.18, exon 2 of 2) -3989 ENSMUSG00000083285.2 ENSMUSG00000083285 ENSMUST00000120569 Gm15815 processed_pseudogene Interval_156592 chr8 53863308 53863782 + 0 NA Intergenic Intergenic -48194 ENSMUSG00000110334.1 ENSMUSG00000110334 ENSMUST00000210505 Gm19921 processed_pseudogene Interval_22960 chr11 18010832 18011597 + 0 NA Intergenic Intergenic -36424 ENSMUSG00000084413.1 ENSMUSG00000084413 ENSMUST00000122453 Gm12017 processed_pseudogene Interval_173464 chrX 94187803 94188621 + 0 NA TTS (ENSMUSG00000035150.15) protein_coding-TTS (ENSMUSG00000035150.15) 24650 ENSMUSG00000035150.15 ENSMUSG00000035150 ENSMUST00000127963 Eif2s3x protein_coding Interval_10290 chr1 168110343 168110576 + 0 NA intron (ENSMUSG00000093538.2, intron 1 of 2) antisense-intron (ENSMUSG00000093538.2, intron 1 of 2) 106320 ENSMUSG00000093538.2 ENSMUSG00000093538 ENSMUST00000177351 Gm20711 antisense Interval_50894 chr14 20576238 20577188 + 0 NA TTS (ENSMUSG00000034235.17) protein_coding-TTS (ENSMUSG00000034235.17) 11967 ENSMUSG00000084925.8 ENSMUSG00000084925 ENSMUST00000124940 1810062O18Rik antisense Interval_131687 chr5 139291765 139292864 + 0 NA intron (ENSMUSG00000056413.16, intron 3 of 9) protein_coding-intron (ENSMUSG00000056413.16, intron 4 of 10) 10836 ENSMUSG00000056413.16 ENSMUSG00000056413 ENSMUST00000156815 Adap1 protein_coding Interval_74948 chr17 57770891 57771306 + 0 NA intron (ENSMUSG00000038048.8, intron 1 of 23) protein_coding-intron (ENSMUSG00000038048.8, intron 1 of 23) 1528 ENSMUSG00000038048.8 ENSMUSG00000038048 ENSMUST00000076038 Cntnap5c protein_coding Interval_11237 chr1 180378307 180378771 + 0 NA exon (ENSMUSG00000103772.1, exon 1 of 1) TEC-exon (ENSMUSG00000103772.1, exon 1 of 1) 2095 ENSMUSG00000103772.1 ENSMUSG00000103772 ENSMUST00000194945 Gm36933 TEC Interval_15622 chr10 52381433 52382786 + 0 NA promoter-TSS (ENSMUSG00000019861.15) protein_coding-promoter-TSS (ENSMUSG00000019861.15) -883 ENSMUSG00000112317.1 ENSMUSG00000112317 ENSMUST00000218206 Gm47580 TEC Interval_16214 chr10 61468758 61469310 + 0 NA Intergenic Intergenic -6767 ENSMUSG00000037151.8 ENSMUSG00000037151 ENSMUST00000049242 Lrrc20 protein_coding Interval_94915 chr2 101706251 101707255 + 0 NA Intergenic Intergenic 22538 ENSMUSG00000027164.8 ENSMUSG00000027164 ENSMUST00000144063 Traf6 protein_coding Interval_112720 chr4 44393012 44393212 + 0 NA Intergenic Intergenic 10190 ENSMUSG00000083803.1 ENSMUSG00000083803 ENSMUST00000121242 Gm12455 processed_pseudogene Interval_13849 chr10 23839192 23840155 + 0 NA Intergenic Intergenic -11789 ENSMUSG00000020010.7 ENSMUSG00000020010 ENSMUST00000020190 Vnn3 protein_coding Interval_16348 chr10 62385531 62386446 + 0 NA intron (ENSMUSG00000020080.8, intron 16 of 17) protein_coding-intron (ENSMUSG00000020080.8, intron 16 of 17) 36420 ENSMUSG00000020080.8 ENSMUSG00000020080 ENSMUST00000159579 Hkdc1 protein_coding Interval_15162 chr10 42987440 42990128 + 0 NA Intergenic Intergenic -46209 ENSMUSG00000111171.1 ENSMUSG00000111171 ENSMUST00000213469 Gm47815 antisense Interval_158435 chr8 83714604 83716136 + 0 NA promoter-TSS (ENSMUSG00000005481.18) protein_coding-promoter-TSS (ENSMUSG00000005481.18) 98 ENSMUSG00000005481.18 ENSMUSG00000005481 ENSMUST00000138789 Ddx39 protein_coding Interval_22026 chr11 5849485 5850553 + 0 NA Intergenic Intergenic -13534 ENSMUSG00000020474.11 ENSMUSG00000020474 ENSMUST00000153987 Polm protein_coding Interval_46330 chr13 64000865 64003758 + 0 NA Intergenic Intergenic -55790 ENSMUSG00000113340.1 ENSMUSG00000113340 ENSMUST00000220900 Gm7695 processed_pseudogene Interval_167527 chr9 70250364 70250577 + 0 NA intron (ENSMUSG00000032220.10, intron 1 of 17) protein_coding-intron (ENSMUSG00000032220.10, intron 1 of 27) 43120 ENSMUSG00000032220.10 ENSMUSG00000032220 ENSMUST00000034745 Myo1e protein_coding Interval_99447 chr2 161187344 161188183 + 0 NA intron (ENSMUSG00000067745.4, intron 2 of 2) lincRNA-intron (ENSMUSG00000067745.4, intron 2 of 2) 8699 ENSMUSG00000067745.4 ENSMUSG00000067745 ENSMUST00000131401 Gm14243 lincRNA Interval_21587 chr10 130338364 130338570 + 0 NA intron (ENSMUSG00000034833.10, intron 3 of 3) protein_coding-intron (ENSMUSG00000034833.10, intron 1 of 8) 9723 ENSMUSG00000034833.10 ENSMUSG00000034833 ENSMUST00000220164 Tespa1 protein_coding Interval_66768 chr16 37440217 37440893 + 0 NA Intergenic Intergenic -55632 ENSMUSG00000022829.14 ENSMUSG00000022829 ENSMUST00000123629 Stxbp5l protein_coding Interval_16419 chr10 62808787 62808987 + 0 NA exon (ENSMUSG00000047146.17, exon 11 of 11) protein_coding-exon (ENSMUSG00000047146.17, exon 11 of 11) -25700 ENSMUSG00000112806.1 ENSMUSG00000112806 ENSMUST00000218355 Gm48146 TEC Interval_18502 chr10 86771575 86772645 + 0 NA intron (ENSMUSG00000112743.1, intron 1 of 13) protein_coding-intron (ENSMUSG00000044937.15, intron 14 of 15) 8138 ENSMUSG00000112743.1 ENSMUSG00000112743 ENSMUST00000218802 Gm49358 protein_coding Interval_108357 chr3 125215802 125216178 + 0 NA TTS (ENSMUSG00000106001.1) TEC-TTS (ENSMUSG00000106001.1) 3563 ENSMUSG00000106001.1 ENSMUSG00000106001 ENSMUST00000197548 Gm42826 TEC Interval_139746 chr6 108330476 108331713 + 0 NA intron (ENSMUSG00000030102.11, intron 1 of 22) protein_coding-intron (ENSMUSG00000030102.11, intron 4 of 61) -56340 ENSMUSG00000030102.11 ENSMUSG00000030102 ENSMUST00000205005 Itpr1 protein_coding Interval_65596 chr16 23922603 23923159 + 0 NA Intergenic Intergenic 9513 ENSMUSG00000047531.9 ENSMUSG00000047531 ENSMUST00000231038 Rtp2 protein_coding Interval_16934 chr10 70004340 70005055 + 0 NA TTS (ENSMUSG00000069601.14) protein_coding-TTS (ENSMUSG00000069601.14) -170314 ENSMUSG00000048701.13 ENSMUSG00000048701 ENSMUST00000135607 Ccdc6 protein_coding Interval_161583 chr8 121379592 121379892 + 0 NA intron (ENSMUSG00000092329.1, intron 1 of 15) protein_coding-intron (ENSMUSG00000092329.1, intron 1 of 15) -22906 ENSMUSG00000097384.1 ENSMUSG00000097384 ENSMUST00000181200 Gm26815 lincRNA Interval_70122 chr17 5475604 5476968 + 0 NA Intergenic Intergenic 6678 ENSMUSG00000116691.1 ENSMUSG00000116691 ENSMUST00000231799 Gm8363 processed_pseudogene Interval_141424 chr6 128169250 128169527 + 0 NA TTS (ENSMUSG00000107879.2) translated_unprocessed_pseudogene-TTS (ENSMUSG00000107879.2) -2466 ENSMUSG00000108220.1 ENSMUSG00000108220 ENSMUST00000204623 Gm44056 TEC Interval_170191 chr9 106087457 106088081 + 0 NA intron (ENSMUSG00000032572.9, intron 1 of 37) protein_coding-intron (ENSMUSG00000032572.9, intron 1 of 37) -7705 ENSMUSG00000103434.1 ENSMUSG00000103434 ENSMUST00000192983 Gm36993 TEC Interval_4830 chr1 79917660 79917949 + 0 NA Intergenic Intergenic 5622 ENSMUSG00000067106.6 ENSMUSG00000067106 ENSMUST00000165691 Gm5529 processed_pseudogene Interval_171093 chr9 114502728 114503103 + 0 NA intron (ENSMUSG00000047898.7, intron 1 of 2) protein_coding-intron (ENSMUSG00000047898.7, intron 1 of 2) 2001 ENSMUSG00000047898.7 ENSMUSG00000047898 ENSMUST00000215959 Ccr4 protein_coding Interval_67120 chr16 43596323 43596641 + 0 NA intron (ENSMUSG00000022708.16, intron 3 of 3) protein_coding-intron (ENSMUSG00000022708.16, intron 7 of 8) -44173 ENSMUSG00000076372.2 ENSMUSG00000076372 ENSMUST00000102417 Mir568 miRNA Interval_84484 chr19 11776607 11777766 + 0 NA TTS (ENSMUSG00000041488.16) protein_coding-TTS (ENSMUSG00000041488.16) 6774 ENSMUSG00000024683.6 ENSMUSG00000024683 ENSMUST00000237728 Mrpl16 protein_coding Interval_57876 chr15 24358446 24359567 + 0 NA TTS (ENSMUSG00000115079.1) processed_pseudogene-TTS (ENSMUSG00000115079.1) 1544 ENSMUSG00000115079.1 ENSMUSG00000115079 ENSMUST00000226175 Gm36147 processed_pseudogene Interval_25613 chr11 50209936 50211350 + 0 NA promoter-TSS (ENSMUSG00000036620.14) protein_coding-promoter-TSS (ENSMUSG00000036620.14) -3324 ENSMUSG00000015837.15 ENSMUSG00000015837 ENSMUST00000154805 Sqstm1 protein_coding Interval_133907 chr6 14899821 14902179 + 0 NA promoter-TSS (ENSMUSG00000029563.16) protein_coding-promoter-TSS (ENSMUSG00000029563.16) -451 ENSMUSG00000029563.16 ENSMUSG00000029563 ENSMUST00000115475 Foxp2 protein_coding Interval_59348 chr15 51809367 51809635 + 0 NA intron (ENSMUSG00000022312.11, intron 2 of 2) protein_coding-intron (ENSMUSG00000022312.11, intron 2 of 7) 26756 ENSMUSG00000022312.11 ENSMUSG00000022312 ENSMUST00000228583 Eif3h protein_coding Interval_11887 chr1 186757358 186757856 + 0 NA Intergenic Intergenic 8211 ENSMUSG00000097784.1 ENSMUSG00000097784 ENSMUST00000180869 A430105J06Rik lincRNA Interval_91551 chr2 42994895 42997051 + 0 NA Intergenic Intergenic 186938 ENSMUSG00000105844.1 ENSMUSG00000105844 ENSMUST00000198309 Gm24350 snoRNA Interval_4603 chr1 75387473 75389303 + 0 NA TTS (ENSMUSG00000026207.16) protein_coding-TTS (ENSMUSG00000026207.16) 6262 ENSMUSG00000026207.16 ENSMUSG00000026207 ENSMUST00000143679 Speg protein_coding Interval_105399 chr3 85984488 85984996 + 0 NA intron (ENSMUSG00000028082.14, intron 1 of 20) protein_coding-intron (ENSMUSG00000028082.14, intron 1 of 20) 17749 ENSMUSG00000049013.3 ENSMUSG00000049013 ENSMUST00000061343 Prss48 protein_coding Interval_71156 chr17 20399297 20399489 + 0 NA Intergenic Intergenic -5611 ENSMUSG00000093729.1 ENSMUSG00000093729 ENSMUST00000176293 Vmn1r-ps141 unprocessed_pseudogene Interval_164012 chr9 30880375 30881080 + 0 NA Intergenic Intergenic 28930 ENSMUSG00000033453.8 ENSMUSG00000033453 ENSMUST00000216215 Adamts15 protein_coding Interval_46146 chr13 62008520 62008794 + 0 NA intron (ENSMUSG00000114036.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000114036.1, intron 1 of 1) 1989 ENSMUSG00000113014.1 ENSMUSG00000113014 ENSMUST00000221926 Selenok-ps8 processed_pseudogene Interval_150426 chr7 110432334 110432870 + 0 NA intron (ENSMUSG00000038371.15, intron 14 of 18) protein_coding-intron (ENSMUSG00000038371.15, intron 13 of 40) 7565 ENSMUSG00000091117.1 ENSMUSG00000091117 ENSMUST00000163579 Gm9064 processed_pseudogene Interval_157534 chr8 71261062 71262327 + 0 NA intron (ENSMUSG00000035439.13, intron 3 of 3) protein_coding-intron (ENSMUSG00000035439.13, intron 3 of 10) 10766 ENSMUSG00000035439.13 ENSMUSG00000035439 ENSMUST00000128833 Haus8 protein_coding Interval_163014 chr9 14532220 14532739 + 0 NA Intergenic Intergenic -6718 ENSMUSG00000111612.1 ENSMUSG00000111612 ENSMUST00000213361 Gm47090 processed_pseudogene Interval_77012 chr17 85625030 85625546 + 0 NA TTS (ENSMUSG00000038805.10) protein_coding-TTS (ENSMUSG00000038805.10) -4287 ENSMUSG00000099635.1 ENSMUSG00000099635 ENSMUST00000188560 Gm28528 antisense Interval_23427 chr11 22572341 22573787 + 0 NA Intergenic Intergenic -44344 ENSMUSG00000086256.1 ENSMUSG00000086256 ENSMUST00000142151 Gm12052 lincRNA Interval_123589 chr5 33651828 33653022 + 0 NA promoter-TSS (ENSMUSG00000004642.13) protein_coding-promoter-TSS (ENSMUSG00000004642.13) -129 ENSMUSG00000004642.13 ENSMUSG00000004642 ENSMUST00000126581 Slbp protein_coding Interval_146003 chr7 43046558 43047475 + 0 NA intron (ENSMUSG00000091528.9, intron 6 of 6) protein_coding-intron (ENSMUSG00000091528.9, intron 6 of 6) 13997 ENSMUSG00000108666.1 ENSMUSG00000108666 ENSMUST00000205615 Gm44538 processed_pseudogene Interval_110549 chr4 3821267 3822927 + 0 NA Intergenic Intergenic 13049 ENSMUSG00000088351.1 ENSMUSG00000088351 ENSMUST00000157726 Gm24016 snoRNA Interval_117703 chr4 125657290 125657616 + 0 NA intron (ENSMUSG00000001985.9, intron 8 of 15) protein_coding-intron (ENSMUSG00000001985.9, intron 8 of 15) 152704 ENSMUSG00000094403.1 ENSMUSG00000094403 ENSMUST00000102081 Mir692-2 miRNA Interval_31641 chr11 101942962 101943172 + 0 NA Intergenic Intergenic 3566 ENSMUSG00000082171.1 ENSMUSG00000082171 ENSMUST00000120378 Rpl27-ps2 processed_pseudogene Interval_116043 chr4 107189661 107190000 + 0 NA intron (ENSMUSG00000028618.11, intron 2 of 6) protein_coding-intron (ENSMUSG00000028618.11, intron 3 of 7) 11104 ENSMUSG00000028618.11 ENSMUSG00000028618 ENSMUST00000127652 Tmem59 protein_coding Interval_117400 chr4 123467190 123467597 + 0 NA intron (ENSMUSG00000028649.21, intron 37 of 97) protein_coding-intron (ENSMUSG00000028649.21, intron 35 of 92) -22838 ENSMUSG00000089588.1 ENSMUSG00000089588 ENSMUST00000158963 Gm23548 misc_RNA Interval_17457 chr10 76992282 76993213 + 0 NA intron (ENSMUSG00000112143.1, intron 2 of 4) lincRNA-intron (ENSMUSG00000112143.1, intron 2 of 4) -8846 ENSMUSG00000102522.1 ENSMUSG00000102522 ENSMUST00000194879 Gm37782 TEC Interval_97726 chr2 143451597 143452272 + 0 NA Intergenic Intergenic 55125 ENSMUSG00000080895.1 ENSMUSG00000080895 ENSMUST00000121589 Gm11645 processed_pseudogene Interval_138074 chr6 84995617 84995878 + 0 NA intron (ENSMUSG00000033769.16, intron 4 of 13) protein_coding-intron (ENSMUSG00000033769.16, intron 5 of 16) -66827 ENSMUSG00000107629.1 ENSMUSG00000107629 ENSMUST00000203336 Gm44011 processed_pseudogene Interval_164008 chr9 30834057 30834281 + 0 NA Intergenic Intergenic -52690 ENSMUSG00000111867.1 ENSMUSG00000111867 ENSMUST00000213576 Gm31013 lincRNA Interval_103012 chr3 34444251 34444528 + 0 NA intron (ENSMUSG00000105265.4, intron 2 of 2) processed_transcript-intron (ENSMUSG00000105265.4, intron 2 of 4) -9292 ENSMUSG00000092242.1 ENSMUSG00000092242 ENSMUST00000174440 Gm20515 lincRNA Interval_76443 chr17 80232436 80234446 + 0 NA Intergenic Intergenic 9000 ENSMUSG00000055760.12 ENSMUSG00000055760 ENSMUST00000069486 Gemin6 protein_coding Interval_77619 chr17 93164365 93165298 + 0 NA Intergenic Intergenic -3681 ENSMUSG00000117591.1 ENSMUSG00000117591 ENSMUST00000234088 Gm49997 processed_pseudogene Interval_42851 chr13 20384595 20386724 + 0 NA intron (ENSMUSG00000041112.17, intron 15 of 21) protein_coding-intron (ENSMUSG00000041112.17, intron 15 of 21) 87831 ENSMUSG00000113313.1 ENSMUSG00000113313 ENSMUST00000221484 Gm32036 antisense Interval_130056 chr5 123986875 123987394 + 0 NA intron (ENSMUSG00000000915.15, intron 1 of 3) protein_coding-intron (ENSMUSG00000000915.15, intron 1 of 31) -9718 ENSMUSG00000098454.1 ENSMUSG00000098454 ENSMUST00000185154 Mir7032 miRNA Interval_923 chr1 13204528 13204724 + 0 NA intron (ENSMUSG00000005886.14, intron 4 of 12) protein_coding-intron (ENSMUSG00000005886.14, intron 4 of 22) -24912 ENSMUSG00000103506.1 ENSMUSG00000103506 ENSMUST00000195493 Gm38376 TEC Interval_112515 chr4 41725589 41726150 + 0 NA exon (ENSMUSG00000066224.14, exon 4 of 7) protein_coding-exon (ENSMUSG00000066224.14, exon 4 of 7) -2706 ENSMUSG00000028447.11 ENSMUSG00000028447 ENSMUST00000147120 Dctn3 protein_coding Interval_51250 chr14 25539867 25540141 + 0 NA intron (ENSMUSG00000007817.15, intron 3 of 23) protein_coding-intron (ENSMUSG00000007817.15, intron 3 of 23) 5565 ENSMUSG00000093081.1 ENSMUSG00000093081 ENSMUST00000175340 Mir3075 miRNA Interval_108058 chr3 121207061 121208558 + 0 NA intron (ENSMUSG00000028132.15, intron 7 of 7) protein_coding-intron (ENSMUSG00000028132.15, intron 7 of 7) 23724 ENSMUSG00000028132.15 ENSMUSG00000028132 ENSMUST00000151058 Tlcd4 protein_coding Interval_28123 chr11 72998785 72999445 + 0 NA promoter-TSS (ENSMUSG00000020787.14) protein_coding-promoter-TSS (ENSMUSG00000020787.14) -10676 ENSMUSG00000020787.14 ENSMUSG00000020787 ENSMUST00000148964 P2rx1 protein_coding Interval_98631 chr2 153668538 153669503 + 0 NA promoter-TSS (ENSMUSG00000027478.15) protein_coding-promoter-TSS (ENSMUSG00000027478.15) -350 ENSMUSG00000027478.15 ENSMUSG00000027478 ENSMUST00000140811 Dnmt3b protein_coding Interval_53977 chr14 64017282 64017660 + 0 NA intron (ENSMUSG00000046049.7, intron 1 of 3) protein_coding-intron (ENSMUSG00000046049.7, intron 1 of 3) -12402 ENSMUSG00000046049.7 ENSMUSG00000046049 ENSMUST00000224314 Rp1l1 protein_coding Interval_131073 chr5 134939327 134940172 + 0 NA promoter-TSS (ENSMUSG00000040557.14) protein_coding-promoter-TSS (ENSMUSG00000040557.14) 7185 ENSMUSG00000047501.3 ENSMUSG00000047501 ENSMUST00000051401 Cldn4 protein_coding Interval_99780 chr2 164866732 164867918 + 0 NA Intergenic Intergenic -9705 ENSMUSG00000017754.13 ENSMUSG00000017754 ENSMUST00000128110 Pltp protein_coding Interval_119807 chr4 140108749 140109785 + 0 NA intron (ENSMUSG00000040972.8, intron 2 of 9) protein_coding-intron (ENSMUSG00000040972.8, intron 2 of 9) -22610 ENSMUSG00000085968.1 ENSMUSG00000085968 ENSMUST00000135858 Gm13027 antisense Interval_143756 chr7 16119501 16120774 + 0 NA promoter-TSS (ENSMUSG00000006021.5) protein_coding-promoter-TSS (ENSMUSG00000006021.5) 208 ENSMUSG00000006021.5 ENSMUSG00000006021 ENSMUST00000129080 Kptn protein_coding Interval_154020 chr8 11942772 11943625 + 0 NA Intergenic Intergenic 5099 ENSMUSG00000110002.1 ENSMUSG00000110002 ENSMUST00000211135 Gm45680 lincRNA Interval_125180 chr5 65130658 65131867 + 0 NA promoter-TSS (ENSMUSG00000054920.12) protein_coding-promoter-TSS (ENSMUSG00000054920.12) 110 ENSMUSG00000054920.12 ENSMUSG00000054920 ENSMUST00000203538 Klhl5 protein_coding Interval_157733 chr8 72583454 72584726 + 0 NA intron (ENSMUSG00000031791.8, intron 4 of 4) protein_coding-intron (ENSMUSG00000031791.8, intron 4 of 5) 12035 ENSMUSG00000031791.8 ENSMUSG00000031791 ENSMUST00000211914 Tmem38a protein_coding Interval_166880 chr9 63620809 63621009 + 0 NA intron (ENSMUSG00000037257.8, intron 3 of 6) protein_coding-intron (ENSMUSG00000037257.8, intron 5 of 9) 3921 ENSMUSG00000037257.8 ENSMUSG00000037257 ENSMUST00000213702 Aagab protein_coding Interval_81672 chr18 63082205 63082459 + 0 NA intron (ENSMUSG00000041482.17, intron 24 of 50) protein_coding-intron (ENSMUSG00000041482.17, intron 25 of 53) 86140 ENSMUSG00000118039.1 ENSMUSG00000118039 ENSMUST00000237782 Gm50171 TEC Interval_87895 chr19 56934979 56938232 + 0 NA intron (ENSMUSG00000025083.18, intron 1 of 2) protein_coding-intron (ENSMUSG00000025083.18, intron 6 of 19) 633 ENSMUSG00000025083.18 ENSMUSG00000025083 ENSMUST00000132851 Afap1l2 protein_coding Interval_78755 chr18 20428819 20429299 + 0 NA Intergenic Intergenic -7116 ENSMUSG00000001804.9 ENSMUSG00000001804 ENSMUST00000019426 Dsg4 protein_coding Interval_34914 chr12 13355694 13356886 + 0 NA intron (ENSMUSG00000020576.10, intron 22 of 51) protein_coding-intron (ENSMUSG00000020576.10, intron 22 of 51) 69427 ENSMUSG00000113476.1 ENSMUSG00000113476 ENSMUST00000220829 Gm48309 TEC Interval_61812 chr15 84320641 84320856 + 0 NA Intergenic Intergenic 2604 ENSMUSG00000089267.1 ENSMUSG00000089267 ENSMUST00000158642 Gm22890 snoRNA Interval_60837 chr15 77056166 77056960 + 0 NA TTS (ENSMUSG00000033576.12) protein_coding-TTS (ENSMUSG00000033576.12) -11228 ENSMUSG00000095245.1 ENSMUSG00000095245 ENSMUST00000178183 Gm24753 snRNA Interval_4122 chr1 69488862 69489258 + 0 NA Intergenic Intergenic 4728 ENSMUSG00000100354.1 ENSMUSG00000100354 ENSMUST00000185991 Gm29113 lincRNA Interval_39155 chr12 85492007 85492541 + 0 NA Intergenic Intergenic 17583 ENSMUSG00000021250.13 ENSMUSG00000021250 ENSMUST00000134311 Fos protein_coding Interval_93720 chr2 76114551 76115018 + 0 NA intron (ENSMUSG00000075270.11, intron 6 of 14) protein_coding-intron (ENSMUSG00000075270.11, intron 9 of 19) 100610 ENSMUSG00000075270.11 ENSMUSG00000075270 ENSMUST00000144892 Pde11a protein_coding Interval_74056 chr17 46312459 46312770 + 0 NA intron (ENSMUSG00000032842.13, intron 9 of 12) protein_coding-intron (ENSMUSG00000032842.13, intron 10 of 19) 15193 ENSMUSG00000047428.14 ENSMUSG00000047428 ENSMUST00000170271 Dlk2 protein_coding Interval_161465 chr8 120581378 120581768 + 0 NA TTS (ENSMUSG00000031822.20) protein_coding-TTS (ENSMUSG00000031822.20) 4635 ENSMUSG00000031821.11 ENSMUSG00000031821 ENSMUST00000126094 Gins2 protein_coding Interval_56270 chr14 115560057 115560266 + 0 NA intron (ENSMUSG00000022112.14, intron 6 of 7) protein_coding-intron (ENSMUSG00000022112.14, intron 6 of 7) -3639 ENSMUSG00000093589.1 ENSMUSG00000093589 ENSMUST00000176139 Gm18367 processed_pseudogene Interval_78870 chr18 21060921 21062904 + 0 NA promoter-TSS (ENSMUSG00000024313.8) protein_coding-promoter-TSS (ENSMUSG00000024313.8) -10432 ENSMUSG00000024313.8 ENSMUSG00000024313 ENSMUST00000082235 Mep1b protein_coding Interval_145200 chr7 30607481 30608687 + 0 NA intron (ENSMUSG00000006313.5, intron 3 of 7) protein_coding-intron (ENSMUSG00000006313.5, intron 3 of 7) 4763 ENSMUSG00000006313.5 ENSMUSG00000006313 ENSMUST00000006476 Upk1a protein_coding Interval_29710 chr11 86291435 86292088 + 0 NA intron (ENSMUSG00000085208.3, intron 6 of 6) protein_coding-intron (ENSMUSG00000034297.14, intron 16 of 29) 40422 ENSMUSG00000034297.14 ENSMUSG00000034297 ENSMUST00000144983 Med13 protein_coding Interval_140503 chr6 118922522 118923463 + 0 NA intron (ENSMUSG00000051331.16, intron 3 of 47) protein_coding-intron (ENSMUSG00000051331.16, intron 3 of 46) 88092 ENSMUSG00000089115.1 ENSMUSG00000089115 ENSMUST00000158490 Gm25905 snRNA Interval_39131 chr12 85342292 85342624 + 0 NA TTS (ENSMUSG00000021248.9) protein_coding-TTS (ENSMUSG00000021248.9) -3096 ENSMUSG00000034290.9 ENSMUSG00000034290 ENSMUST00000040992 Nek9 protein_coding Interval_160480 chr8 109874143 109874880 + 0 NA intron (ENSMUSG00000031732.12, intron 1 of 18) protein_coding-intron (ENSMUSG00000031732.12, intron 1 of 18) 5908 ENSMUSG00000031732.12 ENSMUSG00000031732 ENSMUST00000034175 Phlpp2 protein_coding Interval_145414 chr7 34606071 34606261 + 0 NA Intergenic Intergenic 31546 ENSMUSG00000108723.1 ENSMUSG00000108723 ENSMUST00000206863 Gm44837 lincRNA Interval_43129 chr13 24511875 24512897 + 0 NA intron (ENSMUSG00000036006.20, intron 1 of 13) protein_coding-intron (ENSMUSG00000036006.20, intron 1 of 13) 10861 ENSMUSG00000036006.20 ENSMUSG00000036006 ENSMUST00000177489 Ripor2 protein_coding Interval_40226 chr12 102639034 102639562 + 0 NA intron (ENSMUSG00000057963.9, intron 2 of 4) protein_coding-intron (ENSMUSG00000057963.9, intron 2 of 9) 1636 ENSMUSG00000057963.9 ENSMUSG00000057963 ENSMUST00000178697 Itpk1 protein_coding Interval_149548 chr7 99490501 99490800 + 0 NA Intergenic Intergenic -7014 ENSMUSG00000030744.13 ENSMUSG00000030744 ENSMUST00000128174 Rps3 protein_coding Interval_136430 chr6 54397554 54397741 + 0 NA intron (ENSMUSG00000073067.10, intron 3 of 13) processed_transcript-intron (ENSMUSG00000073067.10, intron 3 of 13) -55236 ENSMUSG00000086040.8 ENSMUSG00000086040 ENSMUST00000131043 Wipf3 protein_coding Interval_38271 chr12 76827437 76828148 + 0 NA intron (ENSMUSG00000033373.16, intron 3 of 13) protein_coding-intron (ENSMUSG00000033373.16, intron 2 of 12) -4884 ENSMUSG00000021062.15 ENSMUSG00000021062 ENSMUST00000134124 Rab15 protein_coding Interval_93732 chr2 76287792 76288143 + 0 NA intron (ENSMUSG00000075270.11, intron 2 of 19) protein_coding-intron (ENSMUSG00000075270.11, intron 2 of 19) -30515 ENSMUSG00000105164.1 ENSMUSG00000105164 ENSMUST00000196553 Gm44337 miRNA Interval_3877 chr1 64194292 64194708 + 0 NA intron (ENSMUSG00000101895.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000101895.1, intron 1 of 1) 44299 ENSMUSG00000086721.2 ENSMUSG00000086721 ENSMUST00000117621 Gm13750 processed_pseudogene Interval_21945 chr11 5356875 5357351 + 0 NA intron (ENSMUSG00000041961.14, intron 1 of 3) protein_coding-intron (ENSMUSG00000041961.14, intron 1 of 8) 24627 ENSMUSG00000041961.14 ENSMUSG00000041961 ENSMUST00000143746 Znrf3 protein_coding Interval_163627 chr9 22747409 22748276 + 0 NA intron (ENSMUSG00000035919.16, intron 19 of 22) protein_coding-intron (ENSMUSG00000035919.16, intron 18 of 21) 24993 ENSMUSG00000098940.1 ENSMUSG00000098940 ENSMUST00000184937 Gm27639 snRNA Interval_140461 chr6 118404751 118405180 + 0 NA exon (ENSMUSG00000030138.8, exon 10 of 23) protein_coding-exon (ENSMUSG00000030138.8, exon 10 of 23) 14439 ENSMUSG00000030138.8 ENSMUSG00000030138 ENSMUST00000203444 Bms1 protein_coding Interval_85640 chr19 29265452 29265762 + 0 NA intron (ENSMUSG00000024789.13, intron 2 of 23) protein_coding-intron (ENSMUSG00000024789.13, intron 2 of 23) 13166 ENSMUSG00000024789.13 ENSMUSG00000024789 ENSMUST00000238009 Jak2 protein_coding Interval_157323 chr8 69291553 69293016 + 0 NA exon (ENSMUSG00000079038.3, exon 2 of 2) protein_coding-exon (ENSMUSG00000079038.3, exon 2 of 2) 21204 ENSMUSG00000079038.3 ENSMUSG00000079038 ENSMUST00000078257 D130040H23Rik protein_coding Interval_79899 chr18 35795869 35796196 + 0 NA intron (ENSMUSG00000091896.8, intron 2 of 2) protein_coding-intron (ENSMUSG00000091896.8, intron 2 of 7) -3810 ENSMUSG00000117841.1 ENSMUSG00000117841 ENSMUST00000235919 Gm50371 processed_transcript Interval_132090 chr5 142727648 142728978 + 0 NA intron (ENSMUSG00000039477.16, intron 22 of 24) protein_coding-intron (ENSMUSG00000039477.16, intron 22 of 24) 35801 ENSMUSG00000050822.11 ENSMUSG00000050822 ENSMUST00000058418 Slc29a4 protein_coding Interval_93404 chr2 72856122 72856385 + 0 NA Intergenic Intergenic -42536 ENSMUSG00000085427.7 ENSMUSG00000085427 ENSMUST00000125746 6430710C18Rik lincRNA Interval_7122 chr1 126568596 126569841 + 0 NA intron (ENSMUSG00000049690.15, intron 2 of 2) protein_coding-intron (ENSMUSG00000049690.15, intron 2 of 12) -76476 ENSMUSG00000049690.15 ENSMUSG00000049690 ENSMUST00000162647 Nckap5 protein_coding Interval_91264 chr2 37044506 37045617 + 0 NA Intergenic Intergenic 9037 ENSMUSG00000081174.1 ENSMUSG00000081174 ENSMUST00000117541 Gm13439 processed_pseudogene Interval_96523 chr2 125266611 125267019 + 0 NA Intergenic Intergenic -7749 ENSMUSG00000085797.1 ENSMUSG00000085797 ENSMUST00000146845 A530010F05Rik antisense Interval_15473 chr10 47940040 47940659 + 0 NA Intergenic Intergenic -1492 ENSMUSG00000112917.1 ENSMUSG00000112917 ENSMUST00000218293 Gm47331 processed_pseudogene Interval_95944 chr2 118587069 118588898 + 0 NA Intergenic Intergenic -6096 ENSMUSG00000080747.1 ENSMUSG00000080747 ENSMUST00000119095 Gm14016 processed_pseudogene Interval_41172 chr12 111616594 111616889 + 0 NA promoter-TSS (ENSMUSG00000113910.1) sense_overlapping-promoter-TSS (ENSMUSG00000113910.1) -129 ENSMUSG00000113910.1 ENSMUSG00000113910 ENSMUST00000220971 Gm48286 sense_overlapping Interval_118848 chr4 134041578 134042156 + 0 NA Intergenic Intergenic -11971 ENSMUSG00000049410.8 ENSMUSG00000049410 ENSMUST00000105884 Zfp683 protein_coding Interval_123678 chr5 34466479 34466717 + 0 NA intron (ENSMUSG00000037210.16, intron 1 of 1) protein_coding-intron (ENSMUSG00000037210.16, intron 15 of 16) -3066 ENSMUSG00000107227.1 ENSMUSG00000107227 ENSMUST00000201811 Gm42559 TEC Interval_174101 chrX 134750828 134751524 + 0 NA exon (ENSMUSG00000050394.14, exon 1 of 4) protein_coding-exon (ENSMUSG00000050394.14, exon 1 of 4) 171 ENSMUSG00000050394.14 ENSMUSG00000050394 ENSMUST00000126075 Armcx6 protein_coding Interval_65289 chr16 21248165 21249267 + 0 NA exon (ENSMUSG00000096918.2, exon 5 of 5) lincRNA-exon (ENSMUSG00000096918.2, exon 5 of 5) 7350 ENSMUSG00000098400.1 ENSMUSG00000098400 ENSMUST00000183640 Mir7680 miRNA Interval_147619 chr7 70208589 70209234 + 0 NA intron (ENSMUSG00000109280.1, intron 2 of 2) lincRNA-intron (ENSMUSG00000109097.1, intron 2 of 3) 1476 ENSMUSG00000109280.1 ENSMUSG00000109280 ENSMUST00000208979 Gm35325 lincRNA Interval_56627 chr14 120937949 120938536 + 0 NA intron (ENSMUSG00000030662.10, intron 15 of 25) protein_coding-intron (ENSMUSG00000030662.10, intron 15 of 25) 22395 ENSMUSG00000030662.10 ENSMUSG00000030662 ENSMUST00000228277 Ipo5 protein_coding Interval_26001 chr11 53419919 53420429 + 0 NA exon (ENSMUSG00000049470.13, exon 21 of 21) protein_coding-exon (ENSMUSG00000049470.13, exon 21 of 21) 2996 ENSMUSG00000036216.5 ENSMUSG00000036216 ENSMUST00000036045 Leap2 protein_coding Interval_133682 chr6 8543992 8544990 + 0 NA intron (ENSMUSG00000029638.17, intron 2 of 7) protein_coding-intron (ENSMUSG00000029638.17, intron 2 of 7) 24471 ENSMUSG00000029638.17 ENSMUSG00000029638 ENSMUST00000162206 Glcci1 protein_coding Interval_122151 chr5 18321599 18321853 + 0 NA intron (ENSMUSG00000057614.6, intron 1 of 7) protein_coding-intron (ENSMUSG00000057614.6, intron 1 of 7) -28622 ENSMUSG00000104540.1 ENSMUSG00000104540 ENSMUST00000198905 Gm3527 processed_pseudogene Interval_26493 chr11 58139212 58139580 + 0 NA promoter-TSS (ENSMUSG00000037275.14) protein_coding-promoter-TSS (ENSMUSG00000037275.14) 13328 ENSMUSG00000087629.1 ENSMUSG00000087629 ENSMUST00000129126 Gm12246 antisense Interval_53039 chr14 53740026 53741689 + 0 NA Intergenic Intergenic -2247 ENSMUSG00000076855.5 ENSMUSG00000076855 ENSMUST00000103667 Trav16 TR_V_gene Interval_83329 chr18 84264415 84265131 + 0 NA intron (ENSMUSG00000048410.17, intron 8 of 8) protein_coding-intron (ENSMUSG00000048410.17, intron 2 of 2) 61849 ENSMUSG00000118385.1 ENSMUSG00000118385 ENSMUST00000238064 Gm50311 antisense Interval_111461 chr4 21813725 21814707 + 0 NA intron (ENSMUSG00000040455.17, intron 5 of 6) protein_coding-intron (ENSMUSG00000040455.17, intron 10 of 16) -33832 ENSMUSG00000028248.15 ENSMUSG00000028248 ENSMUST00000133241 Pnisr protein_coding Interval_110051 chr3 152768612 152769276 + 0 NA intron (ENSMUSG00000039047.17, intron 10 of 14) protein_coding-intron (ENSMUSG00000039047.17, intron 11 of 11) 13117 ENSMUSG00000090095.1 ENSMUSG00000090095 ENSMUST00000161849 Rpl29-ps1 processed_pseudogene Interval_23597 chr11 23659260 23659451 + 0 NA intron (ENSMUSG00000020283.5, intron 1 of 2) protein_coding-intron (ENSMUSG00000020283.5, intron 1 of 3) 6318 ENSMUSG00000020283.5 ENSMUSG00000020283 ENSMUST00000146533 Pex13 protein_coding Interval_37431 chr12 68526963 68527380 + 0 NA intron (ENSMUSG00000113433.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000113433.1, intron 1 of 1) 5060 ENSMUSG00000113433.1 ENSMUSG00000113433 ENSMUST00000222659 Gm47489 lincRNA Interval_14142 chr10 28040352 28041186 + 0 NA Intergenic Intergenic 25421 ENSMUSG00000112432.1 ENSMUSG00000112432 ENSMUST00000218855 Gm18507 processed_pseudogene Interval_99726 chr2 164520784 164522620 + 0 NA Intergenic Intergenic 24141 ENSMUSG00000017721.15 ENSMUSG00000017721 ENSMUST00000131976 Pigt protein_coding Interval_49853 chr13 117215497 117216389 + 0 NA intron (ENSMUSG00000021728.8, intron 1 of 3) protein_coding-intron (ENSMUSG00000021728.8, intron 1 of 3) 5129 ENSMUSG00000091423.2 ENSMUSG00000091423 ENSMUST00000238456 Gm17509 antisense Interval_108398 chr3 126613841 126614618 + 0 NA intron (ENSMUSG00000053819.16, intron 2 of 20) protein_coding-intron (ENSMUSG00000053819.16, intron 2 of 18) -11651 ENSMUSG00000104571.1 ENSMUSG00000104571 ENSMUST00000195993 Gm43010 TEC Interval_140055 chr6 113683178 113683915 + 0 NA intron (ENSMUSG00000060477.14, intron 7 of 9) protein_coding-intron (ENSMUSG00000060477.14, intron 10 of 12) -4327 ENSMUSG00000107846.1 ENSMUSG00000107846 ENSMUST00000203466 Gm43963 TEC Interval_22347 chr11 8985442 8986346 + 0 NA Intergenic Intergenic 25234 ENSMUSG00000020413.11 ENSMUSG00000020413 ENSMUST00000127578 Hus1 protein_coding Interval_98549 chr2 153157218 153157569 + 0 NA Intergenic Intergenic 2380 ENSMUSG00000089499.1 ENSMUSG00000089499 ENSMUST00000158874 Gm25643 snRNA Interval_35463 chr12 22735135 22736422 + 0 NA Intergenic Intergenic -9188 ENSMUSG00000113569.1 ENSMUSG00000113569 ENSMUST00000220517 Gm48035 processed_pseudogene Interval_168849 chr9 88026301 88026666 + 0 NA Intergenic Intergenic -4934 ENSMUSG00000077553.1 ENSMUSG00000077553 ENSMUST00000104365 Gm23176 snoRNA Interval_36895 chr12 55009166 55009578 + 0 NA intron (ENSMUSG00000035021.13, intron 1 of 3) protein_coding-intron (ENSMUSG00000035021.13, intron 1 of 3) 12300 ENSMUSG00000088922.1 ENSMUSG00000088922 ENSMUST00000158297 Gm24296 snRNA Interval_171848 chr9 121758916 121760896 + 0 NA promoter-TSS (ENSMUSG00000013419.7) protein_coding-promoter-TSS (ENSMUSG00000013419.7) -118 ENSMUSG00000097820.3 ENSMUSG00000097820 ENSMUST00000216791 E530011L22Rik antisense Interval_164605 chr9 39961934 39962137 + 0 NA promoter-TSS (ENSMUSG00000047352.6) protein_coding-promoter-TSS (ENSMUSG00000047352.6) -2330 ENSMUSG00000047352.6 ENSMUSG00000047352 ENSMUST00000217360 Olfr976 protein_coding Interval_37201 chr12 59629138 59629484 + 0 NA Intergenic Intergenic 16855 ENSMUSG00000112851.1 ENSMUSG00000112851 ENSMUST00000219830 Gm7727 processed_pseudogene Interval_89646 chr2 23966209 23966447 + 0 NA Intergenic Intergenic 57887 ENSMUSG00000083373.1 ENSMUSG00000083373 ENSMUST00000117708 Gm13392 processed_pseudogene Interval_75026 chr17 61405382 61406904 + 0 NA Intergenic Intergenic 8833 ENSMUSG00000117016.1 ENSMUSG00000117016 ENSMUST00000233539 Gm6174 processed_pseudogene Interval_38694 chr12 81105638 81105860 + 0 NA intron (ENSMUSG00000021136.13, intron 2 of 11) protein_coding-intron (ENSMUSG00000021136.13, intron 2 of 12) -60402 ENSMUSG00000092673.1 ENSMUSG00000092673 ENSMUST00000174932 Mir3067 miRNA Interval_65446 chr16 22382168 22384527 + 0 NA TTS (ENSMUSG00000013089.15) protein_coding-TTS (ENSMUSG00000013089.15) 18482 ENSMUSG00000013089.15 ENSMUSG00000013089 ENSMUST00000170393 Etv5 protein_coding Interval_83532 chr18 88911801 88912029 + 0 NA intron (ENSMUSG00000056153.15, intron 1 of 2) protein_coding-intron (ENSMUSG00000056153.15, intron 1 of 2) 3326 ENSMUSG00000118089.1 ENSMUSG00000118089 ENSMUST00000236358 Gm50406 processed_pseudogene Interval_87405 chr19 49022437 49022820 + 0 NA Intergenic Intergenic 30544 ENSMUSG00000117996.1 ENSMUSG00000117996 ENSMUST00000235703 Gm50441 lincRNA Interval_16122 chr10 60851644 60853021 + 0 NA Intergenic Intergenic -20950 ENSMUSG00000020099.8 ENSMUSG00000020099 ENSMUST00000218637 Unc5b protein_coding Interval_99671 chr2 164100770 164100993 + 0 NA intron (ENSMUSG00000018209.15, intron 2 of 2) protein_coding-intron (ENSMUSG00000018209.15, intron 9 of 10) 19284 ENSMUSG00000018209.15 ENSMUSG00000018209 ENSMUST00000088291 Stk4 protein_coding Interval_154488 chr8 18630738 18630942 + 0 NA intron (ENSMUSG00000039842.15, intron 7 of 11) protein_coding-intron (ENSMUSG00000039842.15, intron 7 of 13) -16731 ENSMUSG00000077287.1 ENSMUSG00000077287 ENSMUST00000104099 Gm25763 snoRNA Interval_163792 chr9 25879422 25880346 + 0 NA Intergenic Intergenic -20232 ENSMUSG00000110866.1 ENSMUSG00000110866 ENSMUST00000216055 Gm48362 lincRNA Interval_35880 chr12 31558768 31559983 + 0 NA exon (ENSMUSG00000020651.8, exon 2 of 21) protein_coding-exon (ENSMUSG00000020651.8, exon 2 of 21) -3491 ENSMUSG00000112718.1 ENSMUSG00000112718 ENSMUST00000220174 Gm48524 processed_pseudogene Interval_167172 chr9 65834709 65835219 + 0 NA intron (ENSMUSG00000032386.15, intron 14 of 14) protein_coding-intron (ENSMUSG00000032386.15, intron 12 of 12) -1389 ENSMUSG00000065387.1 ENSMUSG00000065387 ENSMUST00000083453 n-R5s85 rRNA Interval_150897 chr7 116225991 116226814 + 0 NA intron (ENSMUSG00000045659.18, intron 3 of 18) protein_coding-intron (ENSMUSG00000045659.18, intron 3 of 26) 56341 ENSMUSG00000108650.1 ENSMUSG00000108650 ENSMUST00000205675 Gm44867 sense_intronic Interval_45285 chr13 54031296 54031687 + 0 NA Intergenic Intergenic 23289 ENSMUSG00000021478.6 ENSMUSG00000021478 ENSMUST00000222706 Drd1 protein_coding Interval_158310 chr8 81014284 81015610 + 0 NA promoter-TSS (ENSMUSG00000038250.9) protein_coding-promoter-TSS (ENSMUSG00000038250.9) -34 ENSMUSG00000038250.9 ENSMUSG00000038250 ENSMUST00000211538 Usp38 protein_coding Interval_66473 chr16 34081810 34082930 + 0 NA intron (ENSMUSG00000061751.16, intron 33 of 48) protein_coding-intron (ENSMUSG00000061751.16, intron 34 of 59) 13658 ENSMUSG00000061751.16 ENSMUSG00000061751 ENSMUST00000132569 Kalrn protein_coding Interval_80178 chr18 38046488 38047482 + 0 NA intron (ENSMUSG00000118056.1, intron 3 of 3) lincRNA-intron (ENSMUSG00000118056.1, intron 3 of 3) 23456 ENSMUSG00000118056.1 ENSMUSG00000118056 ENSMUST00000236681 Gm30093 lincRNA Interval_104976 chr3 79452569 79454541 + 0 NA intron (ENSMUSG00000091685.6, intron 4 of 4) protein_coding-intron (ENSMUSG00000091685.6, intron 4 of 4) 78321 ENSMUSG00000061175.12 ENSMUSG00000061175 ENSMUST00000139171 Fnip2 protein_coding Interval_168798 chr9 87174300 87174615 + 0 NA intron (ENSMUSG00000042761.14, intron 3 of 4) protein_coding-intron (ENSMUSG00000042761.14, intron 2 of 3) 14956 ENSMUSG00000102830.1 ENSMUSG00000102830 ENSMUST00000194991 Gm37012 TEC Interval_117741 chr4 125958164 125958800 + 0 NA Intergenic Intergenic -36065 ENSMUSG00000085562.7 ENSMUSG00000085562 ENSMUST00000144539 2610028E06Rik lincRNA Interval_47426 chr13 83976049 83976506 + 0 NA intron (ENSMUSG00000114379.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000114379.1, intron 1 of 1) 11714 ENSMUSG00000114379.1 ENSMUSG00000114379 ENSMUST00000223760 Gm4241 lincRNA Interval_174654 chrX 162505026 162505741 + 0 NA intron (ENSMUSG00000040855.15, intron 12 of 17) protein_coding-intron (ENSMUSG00000040855.15, intron 12 of 17) 60229 ENSMUSG00000040855.15 ENSMUSG00000040855 ENSMUST00000155043 Reps2 protein_coding Interval_24816 chr11 39616079 39616362 + 0 NA Intergenic Intergenic 111492 ENSMUSG00000083806.1 ENSMUSG00000083806 ENSMUST00000117479 Gm12131 processed_pseudogene Interval_84572 chr19 12820338 12820840 + 0 NA intron (ENSMUSG00000024696.9, intron 4 of 8) protein_coding-intron (ENSMUSG00000024696.9, intron 4 of 8) 24396 ENSMUSG00000024696.9 ENSMUSG00000024696 ENSMUST00000025601 Lpxn protein_coding Interval_114802 chr4 85365223 85365985 + 0 NA intron (ENSMUSG00000028488.15, intron 3 of 7) protein_coding-intron (ENSMUSG00000028488.15, intron 3 of 8) -10737 ENSMUSG00000028488.15 ENSMUSG00000028488 ENSMUST00000133109 Sh3gl2 protein_coding Interval_1553 chr1 25590626 25591426 + 0 NA intron (ENSMUSG00000033569.17, intron 1 of 8) protein_coding-intron (ENSMUSG00000033569.17, intron 1 of 29) 20158 ENSMUSG00000103889.1 ENSMUSG00000103889 ENSMUST00000195543 Gm37011 TEC Interval_71934 chr17 27087258 27087935 + 0 NA exon (ENSMUSG00000042644.9, exon 7 of 58) protein_coding-exon (ENSMUSG00000042644.9, exon 7 of 58) -3649 ENSMUSG00000098826.1 ENSMUSG00000098826 ENSMUST00000184226 Mir7677 miRNA Interval_158585 chr8 84633313 84634434 + 0 NA exon (ENSMUSG00000034656.18, exon 9 of 9) protein_coding-exon (ENSMUSG00000034656.18, exon 9 of 9) -16689 ENSMUSG00000086067.1 ENSMUSG00000086067 ENSMUST00000127527 Gm16183 antisense Interval_103118 chr3 35573889 35575241 + 0 NA Intergenic Intergenic 28671 ENSMUSG00000105040.1 ENSMUSG00000105040 ENSMUST00000199777 Ube2l3-ps1 processed_pseudogene Interval_128057 chr5 110560401 110560595 + 0 NA intron (ENSMUSG00000033316.14, intron 1 of 10) protein_coding-intron (ENSMUSG00000033316.14, intron 1 of 10) -43023 ENSMUSG00000033316.14 ENSMUSG00000033316 ENSMUST00000165856 Galnt9 protein_coding Interval_96930 chr2 129623584 129624166 + 0 NA intron (ENSMUSG00000037902.18, intron 7 of 8) protein_coding-intron (ENSMUSG00000037902.18, intron 6 of 7) 31036 ENSMUSG00000037902.18 ENSMUSG00000037902 ENSMUST00000162764 Sirpa protein_coding Interval_65607 chr16 24029999 24030252 + 0 NA Intergenic Intergenic -9781 ENSMUSG00000116290.1 ENSMUSG00000116290 ENSMUST00000230357 Gm49518 lincRNA Interval_107917 chr3 116773730 116774896 + 0 NA intron (ENSMUSG00000033400.14, intron 20 of 32) protein_coding-intron (ENSMUSG00000033400.14, intron 21 of 33) 33104 ENSMUSG00000033400.14 ENSMUSG00000033400 ENSMUST00000159670 Agl protein_coding Interval_151336 chr7 121165412 121166001 + 0 NA Intergenic Intergenic 58288 ENSMUSG00000108502.1 ENSMUSG00000108502 ENSMUST00000206527 Gm9240 processed_pseudogene Interval_43996 chr13 38890030 38890928 + 0 NA intron (ENSMUSG00000114767.1, intron 3 of 6) lincRNA-intron (ENSMUSG00000114767.1, intron 3 of 3) 8108 ENSMUSG00000087909.1 ENSMUSG00000087909 ENSMUST00000157284 Gm22035 misc_RNA Interval_9422 chr1 156979887 156980083 + 0 NA intron (ENSMUSG00000101768.1, intron 2 of 2) lincRNA-intron (ENSMUSG00000101768.1, intron 2 of 2) 40147 ENSMUSG00000101905.1 ENSMUSG00000101905 ENSMUST00000186765 4930439D14Rik antisense Interval_173561 chrX 99426475 99427463 + 0 NA intron (ENSMUSG00000073051.4, intron 6 of 6) lincRNA-intron (ENSMUSG00000073051.4, intron 6 of 6) -8074 ENSMUSG00000085053.1 ENSMUSG00000085053 ENSMUST00000152025 Gm14809 lincRNA Interval_134926 chr6 33764170 33764585 + 0 NA intron (ENSMUSG00000029763.17, intron 2 of 4) protein_coding-intron (ENSMUSG00000029763.17, intron 11 of 17) -72223 ENSMUSG00000107103.1 ENSMUSG00000107103 ENSMUST00000202529 Gm43164 TEC Interval_64687 chr16 14191770 14192306 + 0 NA exon (ENSMUSG00000022678.16, exon 9 of 9) protein_coding-exon (ENSMUSG00000022678.16, exon 9 of 9) 16911 ENSMUSG00000022678.16 ENSMUSG00000022678 ENSMUST00000149232 Nde1 protein_coding Interval_128105 chr5 110897257 110897492 + 0 NA intron (ENSMUSG00000033209.17, intron 2 of 22) protein_coding-intron (ENSMUSG00000033209.17, intron 2 of 23) -7870 ENSMUSG00000081104.1 ENSMUSG00000081104 ENSMUST00000121895 Gm15989 processed_pseudogene Interval_79231 chr18 26368036 26368463 + 0 NA Intergenic Intergenic -127186 ENSMUSG00000088098.1 ENSMUSG00000088098 ENSMUST00000157473 Gm23674 snoRNA Interval_41908 chr13 4245022 4245617 + 0 NA promoter-TSS (ENSMUSG00000071551.13) protein_coding-promoter-TSS (ENSMUSG00000071551.13) -9 ENSMUSG00000071551.13 ENSMUSG00000071551 ENSMUST00000129751 Akr1c19 protein_coding Interval_43738 chr13 35872628 35873048 + 0 NA exon (ENSMUSG00000059288.14, exon 10 of 10) protein_coding-exon (ENSMUSG00000059288.14, exon 10 of 10) -32619 ENSMUSG00000114270.1 ENSMUSG00000114270 ENSMUST00000225277 Gm48746 lincRNA Interval_46745 chr13 69834328 69834570 + 0 NA Intergenic Intergenic 32054 ENSMUSG00000021598.9 ENSMUSG00000021598 ENSMUST00000220649 Med10 protein_coding Interval_41886 chr13 3884095 3884759 + 0 NA TTS (ENSMUSG00000021215.15) protein_coding-TTS (ENSMUSG00000021215.15) 15821 ENSMUSG00000113128.1 ENSMUSG00000113128 ENSMUST00000223370 Gm47813 TEC Interval_116912 chr4 118179279 118180734 + 0 NA promoter-TSS (ENSMUSG00000033326.15) protein_coding-promoter-TSS (ENSMUSG00000033326.15) 15928 ENSMUSG00000088303.1 ENSMUSG00000088303 ENSMUST00000157678 Gm23382 snoRNA Interval_80643 chr18 45089769 45090409 + 0 NA exon (ENSMUSG00000098244.1, exon 1 of 2) processed_pseudogene-exon (ENSMUSG00000098244.1, exon 1 of 2) 225 ENSMUSG00000098244.1 ENSMUSG00000098244 ENSMUST00000182674 Gm26928 processed_pseudogene Interval_154897 chr8 24923647 24924167 + 0 NA intron (ENSMUSG00000037437.18, intron 3 of 8) protein_coding-intron (ENSMUSG00000037437.18, intron 3 of 19) -14393 ENSMUSG00000088736.1 ENSMUSG00000088736 ENSMUST00000158111 Gm23898 snRNA Interval_99057 chr2 156905087 156905764 + 0 NA intron (ENSMUSG00000080880.1, intron 5 of 11) unprocessed_pseudogene-intron (ENSMUSG00000080880.1, intron 5 of 11) 9958 ENSMUSG00000080880.1 ENSMUSG00000080880 ENSMUST00000117381 Gm14278 unprocessed_pseudogene Interval_44333 chr13 43773905 43774819 + 0 NA Intergenic Intergenic -10823 ENSMUSG00000015396.4 ENSMUSG00000015396 ENSMUST00000221359 Cd83 protein_coding Interval_56581 chr14 120491434 120491921 + 0 NA intron (ENSMUSG00000051615.14, intron 1 of 1) protein_coding-intron (ENSMUSG00000051615.14, intron 1 of 1) 13233 ENSMUSG00000051615.14 ENSMUSG00000051615 ENSMUST00000062117 Rap2a protein_coding Interval_125709 chr5 73419079 73420094 + 0 NA intron (ENSMUSG00000029154.13, intron 7 of 15) protein_coding-intron (ENSMUSG00000029154.13, intron 7 of 15) -10745 ENSMUSG00000029154.13 ENSMUSG00000029154 ENSMUST00000135820 Cwh43 protein_coding Interval_109431 chr3 142303062 142303295 + 0 NA TTS (ENSMUSG00000028273.15) protein_coding-TTS (ENSMUSG00000028273.15) 801 ENSMUSG00000028273.15 ENSMUSG00000028273 ENSMUST00000058626 Pdlim5 protein_coding Interval_58769 chr15 37976620 37977736 + 0 NA intron (ENSMUSG00000037487.7, intron 1 of 7) protein_coding-intron (ENSMUSG00000037487.7, intron 52 of 58) -6563 ENSMUSG00000037487.7 ENSMUSG00000037487 ENSMUST00000227143 Ubr5 protein_coding Interval_117243 chr4 120909644 120910410 + 0 NA Intergenic Intergenic 6567 ENSMUSG00000089381.1 ENSMUSG00000089381 ENSMUST00000158756 Gm24678 snRNA Interval_108287 chr3 123321702 123322402 + 0 NA intron (ENSMUSG00000039234.11, intron 5 of 19) protein_coding-intron (ENSMUSG00000039234.11, intron 8 of 22) 54562 ENSMUSG00000039234.11 ENSMUSG00000039234 ENSMUST00000196482 Sec24d protein_coding Interval_48042 chr13 95518057 95519273 + 0 NA intron (ENSMUSG00000021678.9, intron 1 of 1) protein_coding-intron (ENSMUSG00000021678.9, intron 1 of 1) 6562 ENSMUSG00000021678.9 ENSMUSG00000021678 ENSMUST00000022185 F2rl1 protein_coding Interval_37907 chr12 72976364 72977145 + 0 NA Intergenic Intergenic 25859 ENSMUSG00000102197.1 ENSMUSG00000102197 ENSMUST00000195404 Gm38170 TEC Interval_12492 chr1 194322817 194323026 + 0 NA Intergenic Intergenic -100162 ENSMUSG00000103692.1 ENSMUSG00000103692 ENSMUST00000193395 4930503O07Rik lincRNA Interval_122117 chr5 17348261 17348671 + 0 NA Intergenic Intergenic -24714 ENSMUSG00000091827.2 ENSMUSG00000091827 ENSMUST00000166086 Speer4f2 protein_coding Interval_139512 chr6 100647293 100647699 + 0 NA intron (ENSMUSG00000035378.17, intron 6 of 10) protein_coding-intron (ENSMUSG00000035378.17, intron 6 of 7) 14967 ENSMUSG00000108122.1 ENSMUSG00000108122 ENSMUST00000204269 Gm44116 TEC Interval_141759 chr6 134263109 134263775 + 0 NA intron (ENSMUSG00000030199.16, intron 8 of 8) protein_coding-intron (ENSMUSG00000030199.16, intron 7 of 7) -17076 ENSMUSG00000108263.1 ENSMUSG00000108263 ENSMUST00000204426 1700051K13Rik TEC Interval_52256 chr14 41065518 41067068 + 0 NA intron (ENSMUSG00000021791.7, intron 1 of 3) protein_coding-intron (ENSMUSG00000021791.7, intron 1 of 3) 2915 ENSMUSG00000021791.7 ENSMUSG00000021791 ENSMUST00000022316 Dydc2 protein_coding Interval_134334 chr6 25367177 25367385 + 0 NA Intergenic Intergenic -167230 ENSMUSG00000089442.1 ENSMUSG00000089442 ENSMUST00000158817 Gm22529 snoRNA Interval_46820 chr13 71507222 71508742 + 0 NA intron (ENSMUSG00000113358.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000113358.1, intron 1 of 1) 20375 ENSMUSG00000113358.1 ENSMUSG00000113358 ENSMUST00000221719 1700112M02Rik lincRNA Interval_4467 chr1 74376037 74377126 + 0 NA promoter-TSS (ENSMUSG00000026177.11) protein_coding-promoter-TSS (ENSMUSG00000026177.11) 1386 ENSMUSG00000026177.11 ENSMUSG00000026177 ENSMUST00000134189 Slc11a1 protein_coding Interval_42285 chr13 11771955 11772334 + 0 NA exon (ENSMUSG00000021313.16, exon 25 of 25) protein_coding-exon (ENSMUSG00000021313.16, exon 25 of 25) 49590 ENSMUSG00000113269.1 ENSMUSG00000113269 ENSMUST00000221204 Gm47494 TEC Interval_105521 chr3 87227100 87227448 + 0 NA Intergenic Intergenic -19269 ENSMUSG00000074506.4 ENSMUSG00000074506 ENSMUST00000098980 Gm10705 processed_pseudogene Interval_145954 chr7 42618214 42619707 + 0 NA intron (ENSMUSG00000074158.9, intron 1 of 3) protein_coding-intron (ENSMUSG00000074158.9, intron 1 of 3) -2601 ENSMUSG00000074158.9 ENSMUSG00000074158 ENSMUST00000098503 Zfp976 protein_coding Interval_52650 chr14 48245927 48246609 + 0 NA intron (ENSMUSG00000021846.9, intron 2 of 4) protein_coding-intron (ENSMUSG00000021846.9, intron 3 of 5) 19067 ENSMUSG00000063885.5 ENSMUSG00000063885 ENSMUST00000181413 Gm6498 transcribed_processed_pseudogene Interval_58183 chr15 30427510 30428068 + 0 NA intron (ENSMUSG00000022240.10, intron 2 of 2) protein_coding-intron (ENSMUSG00000022240.10, intron 2 of 22) -1055 ENSMUSG00000115073.1 ENSMUSG00000115073 ENSMUST00000226263 Gm49283 TEC Interval_28853 chr11 78789099 78789467 + 0 NA Intergenic Intergenic -34761 ENSMUSG00000080600.2 ENSMUSG00000080600 ENSMUST00000116950 Gm23840 miRNA Interval_126516 chr5 89477572 89477975 + 0 NA Intergenic Intergenic 22204 ENSMUSG00000106534.1 ENSMUSG00000106534 ENSMUST00000198766 Gm6366 processed_pseudogene Interval_3059 chr1 52782736 52782997 + 0 NA Intergenic Intergenic 16622 ENSMUSG00000026102.9 ENSMUSG00000026102 ENSMUST00000159725 Inpp1 protein_coding Interval_151687 chr7 126040645 126043008 + 0 NA intron (ENSMUSG00000046182.8, intron 1 of 6) protein_coding-intron (ENSMUSG00000046182.8, intron 1 of 6) 22621 ENSMUSG00000108376.1 ENSMUSG00000108376 ENSMUST00000206586 Gm44874 TEC Interval_2138 chr1 36664563 36666026 + 0 NA intron (ENSMUSG00000046337.17, intron 1 of 14) protein_coding-intron (ENSMUSG00000046337.17, intron 1 of 9) 1329 ENSMUSG00000077939.1 ENSMUSG00000077939 ENSMUST00000104746 Gm24133 miRNA Interval_4650 chr1 75665344 75665961 + 0 NA Intergenic Intergenic 29262 ENSMUSG00000082012.1 ENSMUSG00000082012 ENSMUST00000121823 Gm5257 processed_pseudogene Interval_159559 chr8 95459474 95459936 + 0 NA TTS (ENSMUSG00000046707.9) protein_coding-TTS (ENSMUSG00000046707.9) -8941 ENSMUSG00000110598.1 ENSMUSG00000110598 ENSMUST00000211857 Gm45854 TEC Interval_124179 chr5 39051265 39051495 + 0 NA Intergenic Intergenic -48349 ENSMUSG00000106924.1 ENSMUSG00000106924 ENSMUST00000200823 Gm42857 processed_pseudogene Interval_140457 chr6 118350152 118350443 + 0 NA Intergenic Intergenic -41913 ENSMUSG00000107933.1 ENSMUSG00000107933 ENSMUST00000204033 Gm30498 lincRNA Interval_7166 chr1 127401208 127401721 + 0 NA intron (ENSMUSG00000036155.13, intron 9 of 15) protein_coding-intron (ENSMUSG00000036155.13, intron 11 of 17) -5312 ENSMUSG00000103390.1 ENSMUSG00000103390 ENSMUST00000195573 Gm38301 TEC Interval_38918 chr12 83792679 83792998 + 0 NA TTS (ENSMUSG00000021223.13) protein_coding-TTS (ENSMUSG00000021223.13) 29176 ENSMUSG00000021223.13 ENSMUSG00000021223 ENSMUST00000152904 Papln protein_coding Interval_116478 chr4 114308736 114309077 + 0 NA Intergenic Intergenic -97818 ENSMUSG00000070867.4 ENSMUSG00000070867 ENSMUST00000094894 Trabd2b protein_coding Interval_11813 chr1 185637477 185637704 + 0 NA Intergenic Intergenic -107213 ENSMUSG00000103799.1 ENSMUSG00000103799 ENSMUST00000195210 Gm38093 lincRNA Interval_62140 chr15 87941020 87941414 + 0 NA Intergenic Intergenic -26199 ENSMUSG00000116061.1 ENSMUSG00000116061 ENSMUST00000229118 Gm49472 lincRNA Interval_56052 chr14 105161115 105161789 + 0 NA intron (ENSMUSG00000022119.15, intron 1 of 21) protein_coding-intron (ENSMUSG00000022119.15, intron 1 of 21) 22933 ENSMUSG00000115831.1 ENSMUSG00000115831 ENSMUST00000226837 Gm48937 processed_pseudogene Interval_68850 chr16 87584804 87585422 + 0 NA intron (ENSMUSG00000025610.7, intron 4 of 4) protein_coding-intron (ENSMUSG00000025610.7, intron 4 of 4) 31783 ENSMUSG00000025610.7 ENSMUSG00000025610 ENSMUST00000026700 Map3k7cl protein_coding Interval_43756 chr13 36108883 36109158 + 0 NA intron (ENSMUSG00000046573.7, intron 1 of 2) protein_coding-intron (ENSMUSG00000046573.7, intron 1 of 2) 8506 ENSMUSG00000046573.7 ENSMUSG00000046573 ENSMUST00000053265 Lyrm4 protein_coding Interval_55232 chr14 79521239 79521498 + 0 NA intron (ENSMUSG00000036461.16, intron 1 of 7) protein_coding-intron (ENSMUSG00000036461.16, intron 1 of 8) 5682 ENSMUSG00000036461.16 ENSMUSG00000036461 ENSMUST00000227104 Elf1 protein_coding Interval_11349 chr1 181143691 181144847 + 0 NA promoter-TSS (ENSMUSG00000026516.8) protein_coding-promoter-TSS (ENSMUSG00000026516.8) -424 ENSMUSG00000062169.13 ENSMUSG00000062169 ENSMUST00000111057 Cnih4 protein_coding Interval_173899 chrX 107938031 107938800 + 0 NA Intergenic Intergenic 10050 ENSMUSG00000073006.2 ENSMUSG00000073006 ENSMUST00000155294 Gm732 protein_coding Interval_131217 chr5 135874330 135874755 + 0 NA exon (ENSMUSG00000039860.19, exon 15 of 15) protein_coding-exon (ENSMUSG00000039860.19, exon 15 of 15) -1115 ENSMUSG00000095502.1 ENSMUSG00000095502 ENSMUST00000179641 Gm22450 snRNA Interval_56078 chr14 105397379 105397880 + 0 NA Intergenic Intergenic -29930 ENSMUSG00000115548.1 ENSMUSG00000115548 ENSMUST00000226670 5430440P10Rik lincRNA Interval_159312 chr8 93368807 93370303 + 0 NA intron (ENSMUSG00000074156.6, intron 4 of 13) protein_coding-intron (ENSMUSG00000074156.6, intron 4 of 13) 10170 ENSMUSG00000074156.6 ENSMUSG00000074156 ENSMUST00000145041 Ces1h protein_coding Interval_46586 chr13 67398789 67400209 + 0 NA intron (ENSMUSG00000078994.9, intron 1 of 3) protein_coding-intron (ENSMUSG00000078994.9, intron 1 of 3) 320 ENSMUSG00000078994.9 ENSMUSG00000078994 ENSMUST00000224825 Zfp429 protein_coding Interval_124982 chr5 63226521 63226926 + 0 NA Intergenic Intergenic 415049 ENSMUSG00000090326.2 ENSMUSG00000090326 ENSMUST00000170704 Dthd1 protein_coding Interval_95519 chr2 111216341 111217175 + 0 NA intron (ENSMUSG00000027157.10, intron 6 of 15) protein_coding-intron (ENSMUSG00000027157.10, intron 6 of 15) -11559 ENSMUSG00000027157.10 ENSMUSG00000027157 ENSMUST00000028577 A26c3 protein_coding Interval_103953 chr3 55436536 55436760 + 0 NA intron (ENSMUSG00000027797.15, intron 2 of 4) protein_coding-intron (ENSMUSG00000027797.15, intron 4 of 16) -25324 ENSMUSG00000027797.15 ENSMUSG00000027797 ENSMUST00000198821 Dclk1 protein_coding Interval_81604 chr18 62015929 62016823 + 0 NA TTS (ENSMUSG00000045629.8) protein_coding-TTS (ENSMUSG00000045629.8) 38417 ENSMUSG00000045629.8 ENSMUSG00000045629 ENSMUST00000236759 Sh3tc2 protein_coding Interval_162722 chr9 7995085 7997131 + 0 NA TTS (ENSMUSG00000053110.13) protein_coding-TTS (ENSMUSG00000053110.13) 5595 ENSMUSG00000053110.13 ENSMUSG00000053110 ENSMUST00000174300 Yap1 protein_coding Interval_125111 chr5 64587825 64588752 + 0 NA Intergenic Intergenic 22412 ENSMUSG00000105402.4 ENSMUSG00000105402 ENSMUST00000196283 Gm3716 lincRNA Interval_11788 chr1 185444755 185444948 + 0 NA Intergenic Intergenic -3032 ENSMUSG00000051295.8 ENSMUSG00000051295 ENSMUST00000143787 9630028B13Rik lincRNA Interval_60864 chr15 77225359 77226072 + 0 NA intron (ENSMUSG00000033565.18, intron 1 of 3) protein_coding-intron (ENSMUSG00000033565.18, intron 2 of 12) 16836 ENSMUSG00000089242.1 ENSMUSG00000089242 ENSMUST00000158617 Gm24056 snRNA Interval_41193 chr12 111719740 111720716 + 0 NA intron (ENSMUSG00000037787.14, intron 1 of 5) protein_coding-intron (ENSMUSG00000037787.14, intron 1 of 4) -6164 ENSMUSG00000090193.1 ENSMUSG00000090193 ENSMUST00000159897 Gm15995 processed_transcript Interval_13933 chr10 24804895 24807061 + 0 NA intron (ENSMUSG00000019989.8, intron 9 of 13) protein_coding-intron (ENSMUSG00000019989.8, intron 9 of 24) 30194 ENSMUSG00000019989.8 ENSMUSG00000019989 ENSMUST00000220209 Enpp3 protein_coding Interval_107609 chr3 108868547 108869714 + 0 NA TTS (ENSMUSG00000045326.13) protein_coding-TTS (ENSMUSG00000045326.13) -12693 ENSMUSG00000105175.1 ENSMUSG00000105175 ENSMUST00000196867 Gm43097 processed_pseudogene Interval_170913 chr9 112016182 112016662 + 0 NA Intergenic Intergenic -97756 ENSMUSG00000111054.1 ENSMUSG00000111054 ENSMUST00000215688 4930545L08Rik lincRNA Interval_133355 chr6 3622273 3623188 + 0 NA Intergenic Intergenic 34679 ENSMUSG00000001376.17 ENSMUSG00000001376 ENSMUST00000184411 Vps50 protein_coding Interval_31094 chr11 98099610 98099877 + 0 NA intron (ENSMUSG00000020883.18, intron 7 of 7) protein_coding-intron (ENSMUSG00000020883.18, intron 8 of 14) -14319 ENSMUSG00000084896.1 ENSMUSG00000084896 ENSMUST00000145489 Gm11632 processed_transcript Interval_66531 chr16 34913536 34913950 + 0 NA intron (ENSMUSG00000022836.11, intron 2 of 3) protein_coding-intron (ENSMUSG00000022836.11, intron 12 of 31) 8604 ENSMUSG00000022836.11 ENSMUSG00000022836 ENSMUST00000231589 Mylk protein_coding Interval_125265 chr5 65763105 65765199 + 0 NA promoter-TSS (ENSMUSG00000037795.14) protein_coding-promoter-TSS (ENSMUSG00000037795.14) 173 ENSMUSG00000037795.14 ENSMUSG00000037795 ENSMUST00000201044 N4bp2 protein_coding Interval_9421 chr1 156967677 156968589 + 0 NA Intergenic Intergenic 28295 ENSMUSG00000101905.1 ENSMUSG00000101905 ENSMUST00000186765 4930439D14Rik antisense Interval_49620 chr13 113597365 113597806 + 0 NA intron (ENSMUSG00000042364.11, intron 1 of 1) protein_coding-intron (ENSMUSG00000042364.11, intron 1 of 1) 16429 ENSMUSG00000042364.11 ENSMUSG00000042364 ENSMUST00000224883 Snx18 protein_coding Interval_160635 chr8 111244180 111245079 + 0 NA intron (ENSMUSG00000003316.14, intron 1 of 25) protein_coding-intron (ENSMUSG00000003316.14, intron 1 of 24) 14587 ENSMUSG00000003316.14 ENSMUSG00000003316 ENSMUST00000003404 Glg1 protein_coding Interval_90108 chr2 28141559 28142180 + 0 NA Intergenic Intergenic 46386 ENSMUSG00000086425.7 ENSMUSG00000086425 ENSMUST00000128888 F730016J06Rik lincRNA Interval_2671 chr1 43141421 43142156 + 0 NA exon (ENSMUSG00000008136.14, exon 3 of 6) protein_coding-exon (ENSMUSG00000008136.14, exon 3 of 6) 43078 ENSMUSG00000010290.7 ENSMUSG00000010290 ENSMUST00000010434 AI597479 protein_coding Interval_101988 chr3 14533408 14534652 + 0 NA promoter-TSS (ENSMUSG00000027550.14) protein_coding-promoter-TSS (ENSMUSG00000027550.14) -14163 ENSMUSG00000027550.14 ENSMUSG00000027550 ENSMUST00000169799 Lrrcc1 protein_coding Interval_60414 chr15 73618132 73618839 + 0 NA intron (ENSMUSG00000079020.9, intron 1 of 1) protein_coding-intron (ENSMUSG00000079020.9, intron 1 of 7) -27367 ENSMUSG00000099958.1 ENSMUSG00000099958 ENSMUST00000188278 1700010B13Rik processed_transcript Interval_14368 chr10 31608438 31610007 + 0 NA promoter-TSS (ENSMUSG00000063760.9) protein_coding-promoter-TSS (ENSMUSG00000063760.9) -38 ENSMUSG00000063760.9 ENSMUSG00000063760 ENSMUST00000081989 Rnf217 protein_coding Interval_105393 chr3 85955600 85955962 + 0 NA Intergenic Intergenic 4893 ENSMUSG00000077517.1 ENSMUSG00000077517 ENSMUST00000104329 Gm25876 snoRNA Interval_162374 chr8 127548050 127549431 + 0 NA intron (ENSMUSG00000025812.18, intron 22 of 24) protein_coding-intron (ENSMUSG00000025812.18, intron 21 of 23) -12695 ENSMUSG00000090074.1 ENSMUSG00000090074 ENSMUST00000161478 Gm6921 processed_pseudogene Interval_44906 chr13 49645049 49645836 + 0 NA intron (ENSMUSG00000021391.10, intron 3 of 5) protein_coding-intron (ENSMUSG00000021391.10, intron 3 of 7) 7325 ENSMUSG00000021391.10 ENSMUSG00000021391 ENSMUST00000221751 Cenpp protein_coding Interval_9118 chr1 153739567 153741159 + 0 NA promoter-TSS (ENSMUSG00000026475.7) protein_coding-promoter-TSS (ENSMUSG00000026475.7) 14 ENSMUSG00000026475.7 ENSMUSG00000026475 ENSMUST00000027748 Rgs16 protein_coding Interval_101351 chr2 180701302 180703024 + 0 NA promoter-TSS (ENSMUSG00000038914.15) protein_coding-promoter-TSS (ENSMUSG00000038914.15) 187 ENSMUSG00000038914.15 ENSMUSG00000038914 ENSMUST00000103054 Dido1 protein_coding Interval_137532 chr6 72926303 72927411 + 0 NA Intergenic Intergenic -26379 ENSMUSG00000097569.2 ENSMUSG00000097569 ENSMUST00000180809 Gm26640 lincRNA Interval_88720 chr2 9985701 9986678 + 0 NA intron (ENSMUSG00000025782.12, intron 2 of 6) protein_coding-intron (ENSMUSG00000025782.12, intron 2 of 6) -44438 ENSMUSG00000025782.12 ENSMUSG00000025782 ENSMUST00000114907 Taf3 protein_coding Interval_59424 chr15 53026659 53027389 + 0 NA Intergenic Intergenic 80844 ENSMUSG00000061731.9 ENSMUSG00000061731 ENSMUST00000140798 Ext1 protein_coding Interval_69011 chr16 90120004 90120237 + 0 NA intron (ENSMUSG00000002489.16, intron 1 of 11) protein_coding-intron (ENSMUSG00000002489.16, intron 1 of 11) 30137 ENSMUSG00000116536.1 ENSMUSG00000116536 ENSMUST00000232386 Gm2805 processed_pseudogene Interval_171514 chr9 118980480 118980816 + 0 NA intron (ENSMUSG00000047409.13, intron 1 of 5) protein_coding-intron (ENSMUSG00000047409.13, intron 1 of 7) 50781 ENSMUSG00000047409.13 ENSMUSG00000047409 ENSMUST00000174132 Ctdspl protein_coding Interval_46697 chr13 69460033 69461193 + 0 NA Intergenic Intergenic -53387 ENSMUSG00000113486.1 ENSMUSG00000113486 ENSMUST00000221578 Gm48676 processed_pseudogene Interval_50237 chr14 11017139 11017800 + 0 NA intron (ENSMUSG00000060579.13, intron 1 of 7) protein_coding-intron (ENSMUSG00000060579.13, intron 2 of 9) -144721 ENSMUSG00000089785.2 ENSMUSG00000089785 ENSMUST00000162199 Slc25a5-ps transcribed_processed_pseudogene Interval_81706 chr18 63739454 63740641 + 0 NA exon (ENSMUSG00000040560.10, exon 12 of 28) protein_coding-exon (ENSMUSG00000040560.10, exon 12 of 28) 983 ENSMUSG00000040560.10 ENSMUSG00000040560 ENSMUST00000235428 Wdr7 protein_coding Interval_138459 chr6 88399353 88399567 + 0 NA intron (ENSMUSG00000033216.9, intron 1 of 5) protein_coding-intron (ENSMUSG00000033216.9, intron 1 of 6) -6517 ENSMUSG00000084582.1 ENSMUSG00000084582 ENSMUST00000122633 Gm25178 misc_RNA Interval_73927 chr17 45529478 45529773 + 0 NA intron (ENSMUSG00000023949.7, intron 1 of 4) protein_coding-intron (ENSMUSG00000023949.7, intron 1 of 4) -3428 ENSMUSG00000023949.7 ENSMUSG00000023949 ENSMUST00000233588 Tcte1 protein_coding Interval_168284 chr9 78427435 78428574 + 0 NA promoter-TSS (ENSMUSG00000087052.1) transcribed_processed_pseudogene-promoter-TSS (ENSMUSG00000087052.1) -441 ENSMUSG00000087052.1 ENSMUSG00000087052 ENSMUST00000144982 Gm8093 transcribed_processed_pseudogene Interval_141812 chr6 134659301 134660020 + 0 NA intron (ENSMUSG00000042992.15, intron 2 of 2) protein_coding-intron (ENSMUSG00000042992.15, intron 2 of 3) -27172 ENSMUSG00000032718.4 ENSMUSG00000032718 ENSMUST00000047443 Mansc1 protein_coding Interval_51556 chr14 30129180 30130106 + 0 NA TTS (ENSMUSG00000015968.18) protein_coding-TTS (ENSMUSG00000015968.18) 34881 ENSMUSG00000118437.1 ENSMUSG00000118437 ENSMUST00000238444 Gm50467 antisense Interval_100951 chr2 173590653 173590942 + 0 NA promoter-TSS (ENSMUSG00000055897.13) transcribed_unprocessed_pseudogene-promoter-TSS (ENSMUSG00000055897.13) 516 ENSMUSG00000055897.13 ENSMUSG00000055897 ENSMUST00000133185 Ppp4r1l-ps transcribed_unprocessed_pseudogene Interval_68125 chr16 65473621 65474553 + 0 NA Intergenic Intergenic 41950 ENSMUSG00000095094.1 ENSMUSG00000095094 ENSMUST00000102245 Gm23659 miRNA Interval_21096 chr10 126301196 126302415 + 0 NA Intergenic Intergenic 46688 ENSMUSG00000112387.1 ENSMUSG00000112387 ENSMUST00000217671 1700021G15Rik lincRNA Interval_79879 chr18 35702586 35703507 + 0 NA promoter-TSS (ENSMUSG00000024350.6) protein_coding-promoter-TSS (ENSMUSG00000024350.6) -179 ENSMUSG00000073598.3 ENSMUSG00000073598 ENSMUST00000097617 1700066B19Rik protein_coding Interval_7624 chr1 132582868 132583104 + 0 NA intron (ENSMUSG00000026442.14, intron 23 of 25) protein_coding-intron (ENSMUSG00000026442.14, intron 24 of 26) -40121 ENSMUSG00000053024.14 ENSMUSG00000053024 ENSMUST00000186530 Cntn2 protein_coding Interval_35022 chr12 16715914 16716734 + 0 NA intron (ENSMUSG00000036523.16, intron 11 of 34) protein_coding-intron (ENSMUSG00000036523.16, intron 9 of 32) 44084 ENSMUSG00000114049.1 ENSMUSG00000114049 ENSMUST00000223113 Gm48140 antisense Interval_81151 chr18 54998421 54998644 + 0 NA intron (ENSMUSG00000096948.2, intron 1 of 4) antisense-intron (ENSMUSG00000096948.2, intron 1 of 4) 8267 ENSMUSG00000096948.2 ENSMUSG00000096948 ENSMUST00000181765 Gm4221 antisense Interval_162493 chr9 3338867 3339361 + 0 NA intron (ENSMUSG00000025899.14, intron 2 of 7) protein_coding-intron (ENSMUSG00000025899.14, intron 2 of 11) -13543 ENSMUSG00000064956.1 ENSMUSG00000064956 ENSMUST00000083022 Gm24918 snoRNA Interval_138975 chr6 93950477 93952406 + 0 NA intron (ENSMUSG00000045095.16, intron 1 of 24) protein_coding-intron (ENSMUSG00000045095.16, intron 1 of 21) -38937 ENSMUSG00000045095.16 ENSMUSG00000045095 ENSMUST00000203034 Magi1 protein_coding Interval_92950 chr2 68911752 68912703 + 0 NA intron (ENSMUSG00000027035.10, intron 1 of 10) protein_coding-intron (ENSMUSG00000027035.10, intron 1 of 9) 6224 ENSMUSG00000103747.1 ENSMUSG00000103747 ENSMUST00000192661 Gm38236 TEC Interval_2133 chr1 36634649 36635380 + 0 NA intron (ENSMUSG00000046337.17, intron 5 of 14) protein_coding-intron (ENSMUSG00000046337.17, intron 5 of 9) -28951 ENSMUSG00000077939.1 ENSMUSG00000077939 ENSMUST00000104746 Gm24133 miRNA Interval_99081 chr2 157051734 157052442 + 0 NA intron (ENSMUSG00000055485.6, intron 3 of 14) protein_coding-intron (ENSMUSG00000055485.6, intron 3 of 14) -24616 ENSMUSG00000055485.6 ENSMUSG00000055485 ENSMUST00000133571 Soga1 protein_coding Interval_3268 chr1 55278890 55280192 + 0 NA intron (ENSMUSG00000025977.15, intron 9 of 9) protein_coding-intron (ENSMUSG00000025977.15, intron 1 of 2) 42364 ENSMUSG00000046994.9 ENSMUSG00000046994 ENSMUST00000061334 Mars2 protein_coding Interval_146935 chr7 55998756 55999451 + 0 NA intron (ENSMUSG00000047037.5, intron 1 of 4) protein_coding-intron (ENSMUSG00000047037.5, intron 1 of 4) -3933 ENSMUSG00000108640.1 ENSMUSG00000108640 ENSMUST00000206943 Gm44508 TEC Interval_96004 chr2 119112312 119113638 + 0 NA exon (ENSMUSG00000027323.10, exon 1 of 10) protein_coding-exon (ENSMUSG00000027323.10, exon 1 of 10) -18543 ENSMUSG00000027323.10 ENSMUSG00000027323 ENSMUST00000143934 Rad51 protein_coding Interval_14487 chr10 34257735 34259196 + 0 NA Intergenic Intergenic -12876 ENSMUSG00000111563.1 ENSMUSG00000111563 ENSMUST00000217423 Gm47485 TEC Interval_153962 chr8 11525885 11526540 + 0 NA intron (ENSMUSG00000056228.10, intron 8 of 9) protein_coding-intron (ENSMUSG00000056228.10, intron 8 of 14) 13826 ENSMUSG00000031505.11 ENSMUSG00000031505 ENSMUST00000210316 Naxd protein_coding Interval_31572 chr11 101447943 101449133 + 0 NA promoter-TSS (ENSMUSG00000010358.13) protein_coding-promoter-TSS (ENSMUSG00000010358.13) -32 ENSMUSG00000010358.13 ENSMUSG00000010358 ENSMUST00000131024 Ifi35 protein_coding Interval_57130 chr15 6771893 6772149 + 0 NA intron (ENSMUSG00000050310.9, intron 15 of 24) protein_coding-intron (ENSMUSG00000050310.9, intron 15 of 37) 63642 ENSMUSG00000050310.9 ENSMUSG00000050310 ENSMUST00000061656 Rictor protein_coding Interval_49254 chr13 109837572 109838234 + 0 NA intron (ENSMUSG00000021699.17, intron 6 of 15) protein_coding-intron (ENSMUSG00000021699.17, intron 5 of 14) -65906 ENSMUSG00000084651.1 ENSMUSG00000084651 ENSMUST00000122702 Mir1904 miRNA Interval_18969 chr10 93471407 93472924 + 0 NA intron (ENSMUSG00000015889.8, intron 2 of 2) protein_coding-intron (ENSMUSG00000015889.8, intron 11 of 18) -10306 ENSMUSG00000015889.8 ENSMUSG00000015889 ENSMUST00000217556 Lta4h protein_coding Interval_85249 chr19 24163940 24164823 + 0 NA intron (ENSMUSG00000024812.11, intron 1 of 22) protein_coding-intron (ENSMUSG00000024812.11, intron 1 of 22) 10311 ENSMUSG00000118371.1 ENSMUSG00000118371 ENSMUST00000237530 Gm50308 processed_pseudogene Interval_21655 chr11 3496755 3497535 + 0 NA intron (ENSMUSG00000034570.12, intron 9 of 12) protein_coding-intron (ENSMUSG00000034570.12, intron 9 of 12) 7654 ENSMUSG00000034570.12 ENSMUSG00000034570 ENSMUST00000183684 Inpp5j protein_coding Interval_174740 chrX 164449312 164449526 + 0 NA intron (ENSMUSG00000031382.14, intron 2 of 6) protein_coding-intron (ENSMUSG00000031382.14, intron 2 of 6) 12409 ENSMUSG00000031382.14 ENSMUSG00000031382 ENSMUST00000033755 Asb11 protein_coding Interval_25420 chr11 48063769 48063974 + 0 NA Intergenic Intergenic -151326 ENSMUSG00000065804.1 ENSMUSG00000065804 ENSMUST00000083870 Gm23039 snRNA Interval_168255 chr9 78213386 78213756 + 0 NA exon (ENSMUSG00000111015.1, exon 1 of 1) processed_pseudogene-exon (ENSMUSG00000111015.1, exon 1 of 1) 1274 ENSMUSG00000111015.1 ENSMUSG00000111015 ENSMUST00000216513 Gm3126 processed_pseudogene Interval_8868 chr1 151664857 151665853 + 0 NA intron (ENSMUSG00000026483.13, intron 5 of 13) protein_coding-intron (ENSMUSG00000026483.13, intron 5 of 14) 89663 ENSMUSG00000100594.1 ENSMUSG00000100594 ENSMUST00000186444 2810414N06Rik lincRNA Interval_79523 chr18 32814050 32814481 + 0 NA Intergenic Intergenic -2595 ENSMUSG00000024379.4 ENSMUSG00000024379 ENSMUST00000234876 Tslp protein_coding Interval_65292 chr16 21289750 21290038 + 0 NA intron (ENSMUSG00000096918.2, intron 1 of 4) lincRNA-intron (ENSMUSG00000096918.2, intron 1 of 4) 6978 ENSMUSG00000096918.2 ENSMUSG00000096918 ENSMUST00000181476 Gm16863 lincRNA Interval_146578 chr7 46982262 46982458 + 0 NA Intergenic Intergenic -1301 ENSMUSG00000056509.10 ENSMUSG00000056509 ENSMUST00000185832 Gm9999 protein_coding Interval_20770 chr10 120872496 120872985 + 0 NA intron (ENSMUSG00000051236.13, intron 1 of 6) protein_coding-intron (ENSMUSG00000051236.13, intron 1 of 6) 15111 ENSMUSG00000087480.1 ENSMUSG00000087480 ENSMUST00000127564 Gm15910 antisense Interval_84294 chr19 9906132 9906560 + 0 NA Intergenic Intergenic -1812 ENSMUSG00000080659.1 ENSMUSG00000080659 ENSMUST00000117009 Gm24484 miRNA Interval_74335 chr17 49043969 49044705 + 0 NA intron (ENSMUSG00000040490.4, intron 1 of 2) protein_coding-intron (ENSMUSG00000040490.4, intron 1 of 2) 52096 ENSMUSG00000105424.1 ENSMUSG00000105424 ENSMUST00000200509 Gm44304 miRNA Interval_112948 chr4 46353158 46353867 + 0 NA Intergenic Intergenic -7997 ENSMUSG00000087383.7 ENSMUSG00000087383 ENSMUST00000152069 Gm12446 antisense Interval_40072 chr12 100999557 100999873 + 0 NA intron (ENSMUSG00000113634.1, intron 1 of 1) protein_coding-intron (ENSMUSG00000021182.16, intron 3 of 29) -7272 ENSMUSG00000113634.1 ENSMUSG00000113634 ENSMUST00000223241 Gm36756 antisense Interval_108907 chr3 133188850 133189503 + 0 NA intron (ENSMUSG00000040969.14, intron 2 of 3) protein_coding-intron (ENSMUSG00000040969.14, intron 2 of 13) 45773 ENSMUSG00000040969.14 ENSMUSG00000040969 ENSMUST00000161932 Arhgef38 protein_coding Interval_174021 chrX 129925444 129926153 + 0 NA intron (ENSMUSG00000034480.18, intron 5 of 26) protein_coding-intron (ENSMUSG00000034480.18, intron 5 of 26) 176056 ENSMUSG00000034480.18 ENSMUSG00000034480 ENSMUST00000133457 Diaph2 protein_coding Interval_4258 chr1 72213771 72214789 + 0 NA Intergenic Intergenic -1973 ENSMUSG00000039395.8 ENSMUSG00000039395 ENSMUST00000048860 Mreg protein_coding Interval_6915 chr1 120628987 120629293 + 0 NA intron (ENSMUSG00000099957.4, intron 1 of 6) lincRNA-intron (ENSMUSG00000099957.4, intron 1 of 6) 7400 ENSMUSG00000099957.4 ENSMUSG00000099957 ENSMUST00000186982 2610027F03Rik lincRNA Interval_139578 chr6 101525865 101526137 + 0 NA intron (ENSMUSG00000108274.1, intron 2 of 2) lincRNA-intron (ENSMUSG00000108274.1, intron 2 of 2) 6346 ENSMUSG00000108274.1 ENSMUSG00000108274 ENSMUST00000205133 Gm44169 lincRNA Interval_152294 chr7 131485398 131485603 + 0 NA intron (ENSMUSG00000030849.18, intron 2 of 6) protein_coding-intron (ENSMUSG00000030849.18, intron 2 of 6) 8403 ENSMUSG00000109087.1 ENSMUSG00000109087 ENSMUST00000207824 Gm45105 processed_pseudogene Interval_92126 chr2 53512478 53513293 + 0 NA Intergenic Intergenic -39041 ENSMUSG00000080716.1 ENSMUSG00000080716 ENSMUST00000119017 Gm13503 processed_pseudogene Interval_65849 chr16 29771403 29772745 + 0 NA Intergenic Intergenic -17762 ENSMUSG00000116814.1 ENSMUSG00000116814 ENSMUST00000232037 Gm49636 lincRNA Interval_84272 chr19 9146360 9146947 + 0 NA intron (ENSMUSG00000024658.7, intron 2 of 5) antisense-intron (ENSMUSG00000024658.7, intron 2 of 5) -11122 ENSMUSG00000024654.8 ENSMUSG00000024654 ENSMUST00000150353 Asrgl1 protein_coding Interval_54749 chr14 74717136 74717340 + 0 NA promoter-TSS (ENSMUSG00000115288.1) processed_pseudogene-promoter-TSS (ENSMUSG00000115288.1) -474 ENSMUSG00000115288.1 ENSMUSG00000115288 ENSMUST00000226155 Gm9212 processed_pseudogene Interval_21279 chr10 127626659 127627012 + 0 NA Intergenic Intergenic 9552 ENSMUSG00000112696.1 ENSMUSG00000112696 ENSMUST00000219311 Gm48815 processed_pseudogene Interval_13544 chr10 19361495 19362847 + 0 NA Intergenic Intergenic 5638 ENSMUSG00000045591.6 ENSMUSG00000045591 ENSMUST00000053225 Olig3 protein_coding Interval_8215 chr1 136550995 136551366 + 0 NA intron (ENSMUSG00000104414.1, intron 3 of 4) lincRNA-intron (ENSMUSG00000104414.1, intron 3 of 4) 9575 ENSMUSG00000104414.1 ENSMUSG00000104414 ENSMUST00000194018 Gm37799 lincRNA Interval_148297 chr7 80355404 80356887 + 0 NA exon (ENSMUSG00000038886.10, exon 10 of 10) protein_coding-exon (ENSMUSG00000038886.10, exon 10 of 10) 3766 ENSMUSG00000038886.10 ENSMUSG00000038886 ENSMUST00000205436 Man2a2 protein_coding Interval_65192 chr16 20447891 20449628 + 0 NA Intergenic Intergenic 3106 ENSMUSG00000088049.1 ENSMUSG00000088049 ENSMUST00000157424 Gm23332 misc_RNA Interval_103946 chr3 55363745 55363943 + 0 NA intron (ENSMUSG00000027797.15, intron 1 of 4) protein_coding-intron (ENSMUSG00000027797.15, intron 3 of 16) 33003 ENSMUSG00000105302.1 ENSMUSG00000105302 ENSMUST00000199764 Gm19817 TEC Interval_41192 chr12 111716394 111716922 + 0 NA intron (ENSMUSG00000037787.14, intron 1 of 5) protein_coding-intron (ENSMUSG00000037787.14, intron 1 of 4) 3378 ENSMUSG00000037787.14 ENSMUSG00000037787 ENSMUST00000162316 Apopt1 protein_coding Interval_13530 chr10 19192124 19193032 + 0 NA intron (ENSMUSG00000111052.1, intron 3 of 3) lincRNA-intron (ENSMUSG00000111052.1, intron 3 of 3) 25340 ENSMUSG00000111052.1 ENSMUSG00000111052 ENSMUST00000216683 Gm20139 lincRNA Interval_30178 chr11 90188561 90188876 + 0 NA intron (ENSMUSG00000110344.1, intron 1 of 1) protein_coding-intron (ENSMUSG00000110344.1, intron 1 of 3) 543 ENSMUSG00000109967.1 ENSMUSG00000109967 ENSMUST00000211334 Gm45883 processed_transcript Interval_71398 chr17 23538416 23538835 + 0 NA Intergenic Intergenic -12174 ENSMUSG00000117322.1 ENSMUSG00000117322 ENSMUST00000233076 6330415G19Rik antisense Interval_136200 chr6 52002253 52002907 + 0 NA intron (ENSMUSG00000059182.7, intron 3 of 12) protein_coding-intron (ENSMUSG00000059182.7, intron 3 of 12) -10021 ENSMUSG00000108244.1 ENSMUSG00000108244 ENSMUST00000203453 Gm44077 lincRNA Interval_30341 chr11 93716576 93717129 + 0 NA Intergenic Intergenic 21770 ENSMUSG00000080872.1 ENSMUSG00000080872 ENSMUST00000122414 Gm11506 processed_pseudogene Interval_101776 chr3 9519977 9520804 + 0 NA intron (ENSMUSG00000040209.12, intron 1 of 9) protein_coding-intron (ENSMUSG00000040209.12, intron 2 of 8) 24222 ENSMUSG00000103485.1 ENSMUSG00000103485 ENSMUST00000192900 Gm38001 TEC Interval_170894 chr9 111703054 111703293 + 0 NA Intergenic Intergenic -12844 ENSMUSG00000032502.8 ENSMUSG00000032502 ENSMUST00000162345 Stac protein_coding Interval_30034 chr11 88817167 88817656 + 0 NA Intergenic Intergenic 24129 ENSMUSG00000018428.15 ENSMUSG00000018428 ENSMUST00000153787 Akap1 protein_coding Interval_98882 chr2 155755674 155755977 + 0 NA TTS (ENSMUSG00000027611.12) protein_coding-TTS (ENSMUSG00000027611.12) 4675 ENSMUSG00000027611.12 ENSMUSG00000027611 ENSMUST00000143493 Procr protein_coding Interval_84172 chr19 8421923 8422248 + 0 NA Intergenic Intergenic -16980 ENSMUSG00000052562.15 ENSMUSG00000052562 ENSMUST00000120540 Slc22a30 protein_coding Interval_12480 chr1 193934141 193934370 + 0 NA Intergenic Intergenic 67246 ENSMUSG00000104182.1 ENSMUSG00000104182 ENSMUST00000194272 Gm21362 processed_pseudogene Interval_82590 chr18 75329424 75332478 + 0 NA Intergenic Intergenic -33634 ENSMUSG00000102047.1 ENSMUSG00000102047 ENSMUST00000186356 2010010A06Rik transcribed_processed_pseudogene Interval_112115 chr4 34793269 34793523 + 0 NA Intergenic Intergenic -15041 ENSMUSG00000028295.14 ENSMUSG00000028295 ENSMUST00000131295 Smim8 protein_coding Interval_99194 chr2 157933975 157934368 + 0 NA intron (ENSMUSG00000037843.6, intron 1 of 3) protein_coding-intron (ENSMUSG00000037843.6, intron 1 of 3) 19518 ENSMUSG00000037843.6 ENSMUSG00000037843 ENSMUST00000109523 Vstm2l protein_coding Interval_168021 chr9 75437724 75438267 + 0 NA Intergenic Intergenic -3529 ENSMUSG00000042487.6 ENSMUSG00000042487 ENSMUST00000213248 Leo1 protein_coding Interval_107311 chr3 105704134 105705654 + 0 NA promoter-TSS (ENSMUSG00000048458.8) protein_coding-promoter-TSS (ENSMUSG00000048458.8) -564 ENSMUSG00000048458.8 ENSMUSG00000048458 ENSMUST00000098273 Inka2 protein_coding Interval_172162 chrX 8100790 8101351 + 0 NA intron (ENSMUSG00000086404.1, intron 2 of 3) processed_transcript-intron (ENSMUSG00000086404.1, intron 2 of 3) 3983 ENSMUSG00000086404.1 ENSMUSG00000086404 ENSMUST00000123120 Gm6787 processed_transcript Interval_61348 chr15 80977386 80978369 + 0 NA promoter-TSS (ENSMUSG00000042303.19) protein_coding-promoter-TSS (ENSMUSG00000042303.19) -12 ENSMUSG00000042303.19 ENSMUSG00000042303 ENSMUST00000156783 Sgsm3 protein_coding Interval_165488 chr9 48635329 48636234 + 0 NA Intergenic Intergenic -38406 ENSMUSG00000032271.13 ENSMUSG00000032271 ENSMUST00000128076 Nnmt protein_coding Interval_46715 chr13 69583215 69584456 + 0 NA intron (ENSMUSG00000021594.11, intron 2 of 2) protein_coding-intron (ENSMUSG00000021594.11, intron 4 of 4) 10994 ENSMUSG00000021594.11 ENSMUSG00000021594 ENSMUST00000059235 Srd5a1 protein_coding Interval_56760 chr14 121892308 121892632 + 0 NA intron (ENSMUSG00000041765.6, intron 1 of 5) protein_coding-intron (ENSMUSG00000041765.6, intron 1 of 8) -13966 ENSMUSG00000102112.1 ENSMUSG00000102112 ENSMUST00000185880 1810041H14Rik antisense Interval_113697 chr4 57709313 57711005 + 0 NA TTS (ENSMUSG00000090053.9) protein_coding-TTS (ENSMUSG00000090053.9) -52448 ENSMUSG00000089286.1 ENSMUSG00000089286 ENSMUST00000158661 Gm24277 snRNA Interval_159341 chr8 93917417 93918280 + 0 NA intron (ENSMUSG00000031748.16, intron 3 of 7) protein_coding-intron (ENSMUSG00000031748.16, intron 3 of 8) 16088 ENSMUSG00000093005.1 ENSMUSG00000093005 ENSMUST00000175264 Gm24159 miRNA Interval_10623 chr1 172288987 172290153 + 0 NA intron (ENSMUSG00000007097.14, intron 6 of 12) protein_coding-intron (ENSMUSG00000007097.14, intron 6 of 22) -13092 ENSMUSG00000007097.14 ENSMUSG00000007097 ENSMUST00000137679 Atp1a2 protein_coding Interval_128764 chr5 115142333 115142801 + 0 NA TTS (ENSMUSG00000048578.11) protein_coding-TTS (ENSMUSG00000048578.11) -7642 ENSMUSG00000046562.5 ENSMUSG00000046562 ENSMUST00000153403 Unc119b protein_coding Interval_138079 chr6 85018698 85019698 + 0 NA intron (ENSMUSG00000033769.16, intron 1 of 2) protein_coding-intron (ENSMUSG00000033769.16, intron 1 of 16) -43376 ENSMUSG00000107629.1 ENSMUSG00000107629 ENSMUST00000203336 Gm44011 processed_pseudogene Interval_100418 chr2 168911628 168913837 + 0 NA promoter-TSS (ENSMUSG00000027551.15) protein_coding-promoter-TSS (ENSMUSG00000027551.15) -30564 ENSMUSG00000077761.1 ENSMUSG00000077761 ENSMUST00000104573 Gm25214 snoRNA Interval_79633 chr18 34117960 34119375 + 0 NA Intergenic Intergenic 7050 ENSMUSG00000118054.1 ENSMUSG00000118054 ENSMUST00000238048 Gm5238 processed_pseudogene Interval_48062 chr13 95667378 95667864 + 0 NA TTS (ENSMUSG00000021676.10) protein_coding-TTS (ENSMUSG00000021676.10) 3898 ENSMUSG00000021676.10 ENSMUSG00000021676 ENSMUST00000238496 Iqgap2 protein_coding Interval_123865 chr5 36086924 36087286 + 0 NA intron (ENSMUSG00000029093.14, intron 3 of 7) protein_coding-intron (ENSMUSG00000029093.14, intron 3 of 26) 102917 ENSMUSG00000029094.12 ENSMUSG00000029094 ENSMUST00000201482 Afap1 protein_coding Interval_127648 chr5 106201080 106201540 + 0 NA Intergenic Intergenic -14341 ENSMUSG00000105600.1 ENSMUSG00000105600 ENSMUST00000196433 Gm5987 processed_pseudogene Interval_169164 chr9 94744165 94744474 + 0 NA intron (ENSMUSG00000031129.9, intron 4 of 15) protein_coding-intron (ENSMUSG00000031129.9, intron 4 of 15) -7510 ENSMUSG00000098251.1 ENSMUSG00000098251 ENSMUST00000183864 Mir7656 miRNA Interval_124849 chr5 56527496 56527683 + 0 NA Intergenic Intergenic 113379 ENSMUSG00000106326.1 ENSMUSG00000106326 ENSMUST00000197497 Gm42977 transcribed_processed_pseudogene Interval_150264 chr7 109098092 109098935 + 0 NA Intergenic Intergenic -22271 ENSMUSG00000094199.1 ENSMUSG00000094199 ENSMUST00000179144 Gm25450 snRNA Interval_108006 chr3 119652892 119653570 + 0 NA Intergenic Intergenic -14357 ENSMUSG00000087806.1 ENSMUSG00000087806 ENSMUST00000157181 Gm23432 snoRNA Interval_6454 chr1 109596469 109596674 + 0 NA Intergenic Intergenic -21442 ENSMUSG00000100884.1 ENSMUSG00000100884 ENSMUST00000185658 Gm28281 processed_pseudogene Interval_164199 chr9 32417637 32417896 + 0 NA Intergenic Intergenic 29162 ENSMUSG00000064492.1 ENSMUSG00000064492 ENSMUST00000082558 Gm22060 snRNA Interval_33655 chr11 117764780 117765421 + 0 NA TTS (ENSMUSG00000025572.17) protein_coding-TTS (ENSMUSG00000025572.17) 15869 ENSMUSG00000025571.13 ENSMUSG00000025571 ENSMUST00000141287 Tnrc6c protein_coding Interval_127397 chr5 103714329 103715880 + 0 NA intron (ENSMUSG00000029313.18, intron 1 of 6) protein_coding-intron (ENSMUSG00000029313.18, intron 1 of 6) -39460 ENSMUSG00000029313.18 ENSMUSG00000029313 ENSMUST00000152145 Aff1 protein_coding Interval_155566 chr8 34622466 34622919 + 0 NA intron (ENSMUSG00000109819.1, intron 1 of 4) lincRNA-intron (ENSMUSG00000109819.1, intron 1 of 4) 14387 ENSMUSG00000109880.1 ENSMUSG00000109880 ENSMUST00000211296 Gm34096 lincRNA Interval_174623 chrX 160221567 160222328 + 0 NA Intergenic Intergenic 48016 ENSMUSG00000082500.1 ENSMUSG00000082500 ENSMUST00000118775 Gm15195 processed_pseudogene Interval_160442 chr8 109529879 109530073 + 0 NA intron (ENSMUSG00000031727.8, intron 9 of 19) protein_coding-intron (ENSMUSG00000031727.8, intron 10 of 20) 22148 ENSMUSG00000037993.8 ENSMUSG00000037993 ENSMUST00000212667 Dhx38 protein_coding Interval_34521 chr12 4878136 4879716 + 0 NA TTS (ENSMUSG00000020634.12) protein_coding-TTS (ENSMUSG00000020634.12) -9665 ENSMUSG00000037336.14 ENSMUSG00000037336 ENSMUST00000147241 Mfsd2b protein_coding Interval_132135 chr5 142894724 142896028 + 0 NA promoter-TSS (ENSMUSG00000066640.11) protein_coding-promoter-TSS (ENSMUSG00000066640.11) 8278 ENSMUSG00000029580.14 ENSMUSG00000029580 ENSMUST00000164765 Actb protein_coding Interval_78578 chr18 14870219 14871296 + 0 NA intron (ENSMUSG00000054321.7, intron 14 of 14) protein_coding-intron (ENSMUSG00000054321.7, intron 14 of 14) 40089 ENSMUSG00000117530.1 ENSMUSG00000117530 ENSMUST00000234669 Gm21055 processed_pseudogene Interval_69285 chr16 91917693 91919373 + 0 NA exon (ENSMUSG00000022957.20, exon 39 of 39) protein_coding-exon (ENSMUSG00000022957.20, exon 39 of 39) 2882 ENSMUSG00000096895.1 ENSMUSG00000096895 ENSMUST00000178139 Gm25245 snRNA Interval_61450 chr15 81699377 81701792 + 0 NA Intergenic Intergenic -5049 ENSMUSG00000063765.12 ENSMUSG00000063765 ENSMUST00000230849 Chadl protein_coding Interval_78362 chr18 12183368 12183597 + 0 NA intron (ENSMUSG00000024410.15, intron 3 of 7) protein_coding-intron (ENSMUSG00000024410.15, intron 10 of 19) -5689 ENSMUSG00000024410.15 ENSMUSG00000024410 ENSMUST00000234982 Rmc1 protein_coding Interval_26192 chr11 54987914 54988258 + 0 NA intron (ENSMUSG00000018340.13, intron 20 of 25) protein_coding-intron (ENSMUSG00000018340.13, intron 20 of 24) -32039 ENSMUSG00000020400.17 ENSMUSG00000020400 ENSMUST00000132776 Tnip1 protein_coding Interval_114725 chr4 84431813 84432222 + 0 NA intron (ENSMUSG00000028487.18, intron 2 of 5) protein_coding-intron (ENSMUSG00000028487.18, intron 4 of 7) -2893 ENSMUSG00000083743.1 ENSMUSG00000083743 ENSMUST00000119071 Gm12421 processed_pseudogene Interval_150870 chr7 116072966 116074022 + 0 NA intron (ENSMUSG00000030663.12, intron 1 of 7) protein_coding-intron (ENSMUSG00000030663.12, intron 1 of 4) 11064 ENSMUSG00000091900.3 ENSMUSG00000091900 ENSMUST00000111755 Gm4353 processed_pseudogene Interval_61775 chr15 84056035 84056327 + 0 NA intron (ENSMUSG00000022441.17, intron 1 of 31) protein_coding-intron (ENSMUSG00000022441.17, intron 1 of 2) 25842 ENSMUSG00000081925.1 ENSMUSG00000081925 ENSMUST00000117961 Rpl31-ps22 processed_pseudogene Interval_108550 chr3 128529393 128529842 + 0 NA Intergenic Intergenic -10755 ENSMUSG00000065248.1 ENSMUSG00000065248 ENSMUST00000083314 Gm22293 snoRNA Interval_59084 chr15 43281943 43283163 + 0 NA promoter-TSS (ENSMUSG00000022336.3) protein_coding-promoter-TSS (ENSMUSG00000022336.3) -2771 ENSMUSG00000022336.3 ENSMUSG00000022336 ENSMUST00000226415 Eif3e protein_coding Interval_25935 chr11 52739124 52739584 + 0 NA Intergenic Intergenic -25280 ENSMUSG00000036264.9 ENSMUSG00000036264 ENSMUST00000036796 Fstl4 protein_coding Interval_82033 chr18 67291153 67291779 + 0 NA intron (ENSMUSG00000024525.7, intron 1 of 7) protein_coding-intron (ENSMUSG00000024525.7, intron 1 of 7) -17123 ENSMUSG00000024525.7 ENSMUSG00000024525 ENSMUST00000237149 Impa2 protein_coding Interval_25258 chr11 45921320 45921738 + 0 NA Intergenic Intergenic 23406 ENSMUSG00000044847.13 ENSMUSG00000044847 ENSMUST00000062458 Lsm11 protein_coding Interval_24259 chr11 31870091 31871362 + 0 NA Intergenic Intergenic -2549 ENSMUSG00000020300.14 ENSMUSG00000020300 ENSMUST00000155278 Cpeb4 protein_coding Interval_101651 chr3 8545560 8546225 + 0 NA exon (ENSMUSG00000027500.10, exon 3 of 3) protein_coding-exon (ENSMUSG00000027500.10, exon 3 of 3) 36306 ENSMUSG00000027500.10 ENSMUSG00000027500 ENSMUST00000194307 Stmn2 protein_coding Interval_128602 chr5 114248041 114248809 + 0 NA promoter-TSS (ENSMUSG00000042010.16) protein_coding-promoter-TSS (ENSMUSG00000042010.16) -10500 ENSMUSG00000084243.1 ENSMUSG00000084243 ENSMUST00000119639 Gm13784 processed_pseudogene Interval_119293 chr4 136696481 136696959 + 0 NA intron (ENSMUSG00000028664.14, intron 3 of 15) protein_coding-intron (ENSMUSG00000028664.14, intron 3 of 15) -2680 ENSMUSG00000028664.14 ENSMUSG00000028664 ENSMUST00000144573 Ephb2 protein_coding Interval_5400 chr1 88497019 88497336 + 0 NA Intergenic Intergenic 12889 ENSMUSG00000062310.7 ENSMUSG00000062310 ENSMUST00000067625 Glrp1 protein_coding Interval_47420 chr13 83761108 83761557 + 0 NA exon (ENSMUSG00000114588.1, exon 1 of 1) processed_pseudogene-exon (ENSMUSG00000114588.1, exon 1 of 1) 1003 ENSMUSG00000114588.1 ENSMUSG00000114588 ENSMUST00000226098 Gm6411 processed_pseudogene Interval_155585 chr8 34842814 34843935 + 0 NA promoter-TSS (ENSMUSG00000031529.5) protein_coding-promoter-TSS (ENSMUSG00000031529.5) 36077 ENSMUSG00000031530.6 ENSMUSG00000031530 ENSMUST00000033930 Dusp4 protein_coding Interval_21742 chr11 4058292 4059234 + 0 NA Intergenic Intergenic -6128 ENSMUSG00000054986.13 ENSMUSG00000054986 ENSMUST00000126396 Sec14l3 protein_coding Interval_12146 chr1 190124992 190125543 + 0 NA intron (ENSMUSG00000010175.13, intron 4 of 4) protein_coding-intron (ENSMUSG00000010175.13, intron 4 of 4) -43403 ENSMUSG00000099404.1 ENSMUSG00000099404 ENSMUST00000189880 Gm28172 antisense Interval_87457 chr19 51996153 51996545 + 0 NA Intergenic Intergenic -76016 ENSMUSG00000117867.1 ENSMUSG00000117867 ENSMUST00000237555 Gm50330 lincRNA Interval_7504 chr1 131889847 131891752 + 0 NA Intergenic Intergenic -16366 ENSMUSG00000100026.1 ENSMUSG00000100026 ENSMUST00000187256 Gm29105 unprocessed_pseudogene Interval_153488 chr7 145164969 145165345 + 0 NA intron (ENSMUSG00000108967.1, intron 2 of 2) lincRNA-intron (ENSMUSG00000108967.1, intron 2 of 2) 2161 ENSMUSG00000108967.1 ENSMUSG00000108967 ENSMUST00000207878 Gm45181 lincRNA Interval_79491 chr18 32305314 32305606 + 0 NA Intergenic Intergenic 12110 ENSMUSG00000089529.1 ENSMUSG00000089529 ENSMUST00000158904 Gm22325 misc_RNA Interval_27137 chr11 63233515 63233982 + 0 NA Intergenic Intergenic 7727 ENSMUSG00000083052.1 ENSMUSG00000083052 ENSMUST00000117347 Gm12285 processed_pseudogene Interval_102579 chr3 27949354 27949709 + 0 NA promoter-TSS (ENSMUSG00000027695.16) protein_coding-promoter-TSS (ENSMUSG00000027695.16) -53163 ENSMUSG00000043164.3 ENSMUSG00000043164 ENSMUST00000058077 Tmem212 protein_coding Interval_27430 chr11 67639411 67640030 + 0 NA intron (ENSMUSG00000033066.16, intron 3 of 7) protein_coding-intron (ENSMUSG00000033066.16, intron 4 of 14) 43156 ENSMUSG00000033066.16 ENSMUSG00000033066 ENSMUST00000133367 Gas7 protein_coding Interval_111159 chr4 13421348 13421663 + 0 NA Intergenic Intergenic -23265 ENSMUSG00000081327.1 ENSMUSG00000081327 ENSMUST00000122192 Gm11819 processed_pseudogene Interval_137931 chr6 83467830 83468096 + 0 NA Intergenic Intergenic 22457 ENSMUSG00000014554.13 ENSMUSG00000014554 ENSMUST00000147060 Dguok protein_coding Interval_69845 chr16 97494850 97495080 + 0 NA intron (ENSMUSG00000022938.8, intron 1 of 6) protein_coding-intron (ENSMUSG00000022938.8, intron 2 of 7) 4057 ENSMUSG00000088269.1 ENSMUSG00000088269 ENSMUST00000157644 Gm24777 rRNA Interval_3006 chr1 52107468 52107796 + 0 NA TTS (ENSMUSG00000062939.11) protein_coding-TTS (ENSMUSG00000062939.11) 2183 ENSMUSG00000062939.11 ENSMUSG00000062939 ENSMUST00000187554 Stat4 protein_coding Interval_32233 chr11 106348796 106349024 + 0 NA TTS (ENSMUSG00000001027.7) protein_coding-TTS (ENSMUSG00000001027.7) 4378 ENSMUSG00000001027.7 ENSMUSG00000001027 ENSMUST00000174877 Scn4a protein_coding Interval_157690 chr8 72315853 72316756 + 0 NA Intergenic Intergenic -2729 ENSMUSG00000055148.7 ENSMUSG00000055148 ENSMUST00000067912 Klf2 protein_coding Interval_117246 chr4 120924494 120925584 + 0 NA promoter-TSS (ENSMUSG00000028629.9) protein_coding-promoter-TSS (ENSMUSG00000028629.9) -34 ENSMUSG00000028629.9 ENSMUSG00000028629 ENSMUST00000156836 Exo5 protein_coding Interval_86325 chr19 38760160 38761002 + 0 NA intron (ENSMUSG00000024998.17, intron 13 of 21) protein_coding-intron (ENSMUSG00000024998.17, intron 23 of 31) -7936 ENSMUSG00000101079.1 ENSMUSG00000101079 ENSMUST00000186584 Gm28991 antisense Interval_152745 chr7 137129427 137130036 + 0 NA exon (ENSMUSG00000054612.4, exon 5 of 5) protein_coding-exon (ENSMUSG00000054612.4, exon 5 of 5) -38089 ENSMUSG00000110174.1 ENSMUSG00000110174 ENSMUST00000211656 Gm45499 processed_pseudogene Interval_149000 chr7 91261941 91263574 + 0 NA intron (ENSMUSG00000052572.19, intron 1 of 13) protein_coding-intron (ENSMUSG00000052572.19, intron 1 of 22) 19762 ENSMUSG00000089271.1 ENSMUSG00000089271 ENSMUST00000158646 Gm24552 snRNA Interval_130575 chr5 128976343 128976792 + 0 NA Intergenic Intergenic 31979 ENSMUSG00000029428.13 ENSMUSG00000029428 ENSMUST00000199813 Stx2 protein_coding Interval_144973 chr7 29193950 29195713 + 0 NA intron (ENSMUSG00000049676.14, intron 9 of 13) protein_coding-intron (ENSMUSG00000049676.14, intron 9 of 13) 11795 ENSMUSG00000061115.4 ENSMUSG00000061115 ENSMUST00000170118 Gm17113 processed_pseudogene Interval_27482 chr11 68135441 68137046 + 0 NA intron (ENSMUSG00000020903.13, intron 6 of 6) protein_coding-intron (ENSMUSG00000020903.13, intron 7 of 7) -40279 ENSMUSG00000083924.1 ENSMUSG00000083924 ENSMUST00000120312 Gm12304 processed_pseudogene Interval_81228 chr18 56643922 56644338 + 0 NA Intergenic Intergenic -23033 ENSMUSG00000118153.1 ENSMUSG00000118153 ENSMUST00000236670 Gm50288 lincRNA Interval_22214 chr11 7199118 7200814 + 0 NA intron (ENSMUSG00000020429.7, intron 2 of 3) protein_coding-intron (ENSMUSG00000020429.7, intron 2 of 3) 2184 ENSMUSG00000020429.7 ENSMUSG00000020429 ENSMUST00000020704 Igfbp1 protein_coding Interval_120387 chr4 148256180 148256417 + 0 NA intron (ENSMUSG00000041544.11, intron 10 of 20) protein_coding-intron (ENSMUSG00000041544.11, intron 10 of 20) 4453 ENSMUSG00000041544.11 ENSMUSG00000041544 ENSMUST00000129734 Disp3 protein_coding Interval_13843 chr10 23781057 23784666 + 0 NA Intergenic Intergenic 2614 ENSMUSG00000070063.1 ENSMUSG00000070063 ENSMUST00000093556 Snora33 snoRNA Interval_112564 chr4 43215156 43215783 + 0 NA exon (ENSMUSG00000028456.18, exon 2 of 33) protein_coding-exon (ENSMUSG00000028456.18, exon 2 of 33) 5971 ENSMUSG00000028456.18 ENSMUSG00000028456 ENSMUST00000143653 Unc13b protein_coding Interval_72281 chr17 28961754 28963025 + 0 NA TTS (ENSMUSG00000005936.19) protein_coding-TTS (ENSMUSG00000005936.19) 9929 ENSMUSG00000005936.19 ENSMUSG00000005936 ENSMUST00000168507 Kctd20 protein_coding Interval_87524 chr19 53247754 53248465 + 0 NA TTS (ENSMUSG00000025026.15) protein_coding-TTS (ENSMUSG00000025026.15) 7081 ENSMUSG00000118314.1 ENSMUSG00000118314 ENSMUST00000237379 1700001K23Rik lincRNA Interval_149272 chr7 96844313 96844811 + 0 NA intron (ENSMUSG00000048078.16, intron 20 of 32) protein_coding-intron (ENSMUSG00000048078.16, intron 21 of 32) 18817 ENSMUSG00000089259.1 ENSMUSG00000089259 ENSMUST00000158634 Gm25712 rRNA Interval_90628 chr2 31556120 31557048 + 0 NA Intergenic Intergenic -3889 ENSMUSG00000084226.1 ENSMUSG00000084226 ENSMUST00000117887 Gm13426 processed_pseudogene Interval_84308 chr19 9982066 9983340 + 0 NA promoter-TSS (ENSMUSG00000024661.7) protein_coding-promoter-TSS (ENSMUSG00000024661.7) -20 ENSMUSG00000024661.7 ENSMUSG00000024661 ENSMUST00000236403 Fth1 protein_coding Interval_18046 chr10 81526646 81527163 + 0 NA TTS (ENSMUSG00000112350.1) lincRNA-TTS (ENSMUSG00000112350.1) 1493 ENSMUSG00000112350.1 ENSMUSG00000112350 ENSMUST00000218454 Gm47697 lincRNA Interval_97739 chr2 143675185 143675671 + 0 NA intron (ENSMUSG00000027419.9, intron 2 of 11) protein_coding-intron (ENSMUSG00000027419.9, intron 2 of 11) 120537 ENSMUSG00000087115.7 ENSMUSG00000087115 ENSMUST00000156362 Pcsk2os2 antisense Interval_75749 chr17 70992380 70992892 + 0 NA intron (ENSMUSG00000117098.1, intron 1 of 3) protein_coding-intron (ENSMUSG00000117098.1, intron 1 of 3) 5927 ENSMUSG00000024048.15 ENSMUSG00000024048 ENSMUST00000128179 Myl12a protein_coding Interval_52973 chr14 52429302 52429944 + 0 NA TTS (ENSMUSG00000076758.6) TR_V_gene-TTS (ENSMUSG00000076758.6) 1656 ENSMUSG00000076758.6 ENSMUSG00000076758 ENSMUST00000185651 Trav1 TR_V_gene Interval_9496 chr1 157875090 157875391 + 0 NA Intergenic Intergenic -65145 ENSMUSG00000102789.1 ENSMUSG00000102789 ENSMUST00000192097 Gm38256 TEC Interval_34729 chr12 9002164 9002718 + 0 NA intron (ENSMUSG00000066643.12, intron 12 of 22) protein_coding-intron (ENSMUSG00000066643.12, intron 12 of 27) -27586 ENSMUSG00000066637.2 ENSMUSG00000066637 ENSMUST00000219470 Ttc32 protein_coding Interval_102356 chr3 22132322 22133512 + 0 NA intron (ENSMUSG00000027630.13, intron 1 of 15) protein_coding-intron (ENSMUSG00000027630.13, intron 1 of 15) -51802 ENSMUSG00000103293.1 ENSMUSG00000103293 ENSMUST00000195073 Gm5842 processed_pseudogene Interval_92017 chr2 52605304 52605821 + 0 NA intron (ENSMUSG00000017412.15, intron 2 of 13) protein_coding-intron (ENSMUSG00000017412.15, intron 2 of 13) -14192 ENSMUSG00000025201.7 ENSMUSG00000025201 ENSMUST00000183232 Bloc1s2-ps processed_pseudogene Interval_126940 chr5 97773536 97773830 + 0 NA Intergenic Intergenic 222412 ENSMUSG00000029338.13 ENSMUSG00000029338 ENSMUST00000202736 Antxr2 protein_coding Interval_120412 chr4 148444241 148444960 + 0 NA exon (ENSMUSG00000047719.2, exon 1 of 2) protein_coding-exon (ENSMUSG00000047719.2, exon 1 of 2) 161 ENSMUSG00000047719.2 ENSMUSG00000047719 ENSMUST00000156686 Ubiad1 protein_coding Interval_113418 chr4 54815171 54815395 + 0 NA Intergenic Intergenic -37845 ENSMUSG00000082111.1 ENSMUSG00000082111 ENSMUST00000120731 Gm12479 processed_pseudogene Interval_23694 chr11 24682002 24682332 + 0 NA intron (ENSMUSG00000087085.1, intron 2 of 3) lincRNA-intron (ENSMUSG00000087085.1, intron 2 of 3) -2456 ENSMUSG00000080631.1 ENSMUSG00000080631 ENSMUST00000116981 Gm25507 miRNA Interval_30232 chr11 91327465 91328574 + 0 NA Intergenic Intergenic 249539 ENSMUSG00000046755.5 ENSMUSG00000046755 ENSMUST00000061019 Kif2b protein_coding Interval_23135 chr11 20112284 20113537 + 0 NA promoter-TSS (ENSMUSG00000020152.7) protein_coding-promoter-TSS (ENSMUSG00000020152.7) -1 ENSMUSG00000020152.7 ENSMUSG00000020152 ENSMUST00000134779 Actr2 protein_coding Interval_96853 chr2 128943499 128944377 + 0 NA exon (ENSMUSG00000027387.11, exon 1 of 9) protein_coding-exon (ENSMUSG00000027387.11, exon 1 of 9) 139 ENSMUSG00000027387.11 ENSMUSG00000027387 ENSMUST00000028866 Zc3h8 protein_coding Interval_105278 chr3 84479299 84481420 + 0 NA promoter-TSS (ENSMUSG00000041842.15) protein_coding-promoter-TSS (ENSMUSG00000041842.15) 34 ENSMUSG00000041842.15 ENSMUSG00000041842 ENSMUST00000131065 Fhdc1 protein_coding Interval_106528 chr3 96966476 96967458 + 0 NA intron (ENSMUSG00000057123.14, intron 1 of 3) protein_coding-intron (ENSMUSG00000057123.14, intron 1 of 3) 33804 ENSMUSG00000105385.1 ENSMUSG00000105385 ENSMUST00000200375 9230114J08Rik antisense Interval_96012 chr2 119166739 119168265 + 0 NA promoter-TSS (ENSMUSG00000046814.3) protein_coding-promoter-TSS (ENSMUSG00000046814.3) -271 ENSMUSG00000046814.3 ENSMUSG00000046814 ENSMUST00000057454 Gchfr protein_coding Interval_112177 chr4 35221204 35221423 + 0 NA intron (ENSMUSG00000028300.14, intron 1 of 4) protein_coding-intron (ENSMUSG00000028300.14, intron 1 of 9) -4602 ENSMUSG00000084828.1 ENSMUSG00000084828 ENSMUST00000146909 Gm12367 processed_transcript Interval_106883 chr3 101505605 101507287 + 0 NA Intergenic Intergenic 74609 ENSMUSG00000104737.1 ENSMUSG00000104737 ENSMUST00000197360 Gm42937 sense_intronic Interval_43172 chr13 24837350 24839647 + 0 NA TTS (ENSMUSG00000035958.3) protein_coding-TTS (ENSMUSG00000035958.3) 6817 ENSMUSG00000035958.3 ENSMUSG00000035958 ENSMUST00000224542 Tdp2 protein_coding Interval_170130 chr9 105272228 105272537 + 0 NA intron (ENSMUSG00000035032.12, intron 10 of 13) protein_coding-intron (ENSMUSG00000035032.12, intron 12 of 15) -28008 ENSMUSG00000035032.12 ENSMUSG00000035032 ENSMUST00000140851 Nek11 protein_coding Interval_39828 chr12 98779114 98779601 + 0 NA intron (ENSMUSG00000021012.16, intron 5 of 6) protein_coding-intron (ENSMUSG00000021012.16, intron 2 of 6) 13252 ENSMUSG00000113196.1 ENSMUSG00000113196 ENSMUST00000220865 D230049E03Rik TEC Interval_86764 chr19 43704558 43705387 + 0 NA exon (ENSMUSG00000025192.13, exon 5 of 13) protein_coding-exon (ENSMUSG00000025192.13, exon 5 of 13) 15163 ENSMUSG00000025192.13 ENSMUSG00000025192 ENSMUST00000131293 Entpd7 protein_coding Interval_71434 chr17 23734411 23734619 + 0 NA promoter-TSS (ENSMUSG00000023908.8) protein_coding-promoter-TSS (ENSMUSG00000023908.8) 6352 ENSMUSG00000023909.4 ENSMUSG00000023909 ENSMUST00000233776 Paqr4 protein_coding Interval_160943 chr8 115803266 115803611 + 0 NA Intergenic Intergenic -95644 ENSMUSG00000055435.6 ENSMUSG00000055435 ENSMUST00000109104 Maf protein_coding Interval_82297 chr18 70380506 70381644 + 0 NA Intergenic Intergenic 52781 ENSMUSG00000110495.1 ENSMUSG00000110495 ENSMUST00000212521 Gm45879 unitary_pseudogene Interval_174479 chrX 153210649 153211757 + 0 NA Intergenic Intergenic -9967 ENSMUSG00000082733.1 ENSMUSG00000082733 ENSMUST00000119867 Gm15153 processed_pseudogene Interval_66441 chr16 33872043 33872525 + 0 NA intron (ENSMUSG00000022817.15, intron 3 of 14) protein_coding-intron (ENSMUSG00000022817.15, intron 3 of 14) -19657 ENSMUSG00000022817.15 ENSMUSG00000022817 ENSMUST00000231409 Itgb5 protein_coding Interval_112871 chr4 45691185 45691712 + 0 NA intron (ENSMUSG00000073860.12, intron 1 of 2) lincRNA-intron (ENSMUSG00000073860.12, intron 1 of 1) 7859 ENSMUSG00000073860.12 ENSMUSG00000073860 ENSMUST00000146622 Gm829 lincRNA Interval_77125 chr17 86744870 86746092 + 0 NA Intergenic Intergenic -27789 ENSMUSG00000117538.1 ENSMUSG00000117538 ENSMUST00000234482 Gm50008 TEC Interval_135802 chr6 47465413 47465627 + 0 NA intron (ENSMUSG00000029686.15, intron 1 of 1) protein_coding-intron (ENSMUSG00000029686.15, intron 1 of 21) -11200 ENSMUSG00000052241.3 ENSMUSG00000052241 ENSMUST00000064013 A930035D04Rik pseudogene Interval_64365 chr16 10859068 10859468 + 0 NA intron (ENSMUSG00000037991.9, intron 1 of 5) protein_coding-intron (ENSMUSG00000037991.9, intron 1 of 5) 24200 ENSMUSG00000037991.9 ENSMUSG00000037991 ENSMUST00000181721 Rmi2 protein_coding Interval_16512 chr10 63287860 63288171 + 0 NA intron (ENSMUSG00000020064.9, intron 13 of 25) protein_coding-intron (ENSMUSG00000020064.9, intron 13 of 24) -2489 ENSMUSG00000020064.9 ENSMUSG00000020064 ENSMUST00000219789 Herc4 protein_coding Interval_22117 chr11 6443662 6444937 + 0 NA promoter-TSS (ENSMUSG00000041126.16) protein_coding-promoter-TSS (ENSMUSG00000041126.16) 144 ENSMUSG00000041126.16 ENSMUSG00000041126 ENSMUST00000093346 H2az2 protein_coding Interval_151226 chr7 119856908 119857241 + 0 NA TTS (ENSMUSG00000048787.13) protein_coding-TTS (ENSMUSG00000048787.13) 13209 ENSMUSG00000030924.16 ENSMUSG00000030924 ENSMUST00000151248 Rexo5 protein_coding Interval_32114 chr11 105315624 105316123 + 0 NA intron (ENSMUSG00000020695.14, intron 1 of 2) protein_coding-intron (ENSMUSG00000020695.14, intron 1 of 19) -24959 ENSMUSG00000020695.14 ENSMUSG00000020695 ENSMUST00000151135 Mrc2 protein_coding Interval_19740 chr10 108406388 108408352 + 0 NA intron (ENSMUSG00000035873.8, intron 2 of 4) protein_coding-intron (ENSMUSG00000035873.8, intron 4 of 6) -20697 ENSMUSG00000093762.1 ENSMUSG00000093762 ENSMUST00000177317 Gm25591 miRNA Interval_123733 chr5 34998282 34999447 + 0 NA promoter-TSS (ENSMUSG00000029101.16) protein_coding-promoter-TSS (ENSMUSG00000029101.16) -15456 ENSMUSG00000029101.16 ENSMUSG00000029101 ENSMUST00000150139 Rgs12 protein_coding Interval_70588 chr17 12156402 12157338 + 0 NA intron (ENSMUSG00000023827.8, intron 1 of 6) protein_coding-intron (ENSMUSG00000023827.8, intron 2 of 8) -33051 ENSMUSG00000063911.4 ENSMUSG00000063911 ENSMUST00000074412 Tdgf1-ps2 processed_pseudogene Interval_112970 chr4 46520371 46520824 + 0 NA intron (ENSMUSG00000039853.18, intron 3 of 4) protein_coding-intron (ENSMUSG00000039853.18, intron 4 of 5) -15304 ENSMUSG00000085990.1 ENSMUSG00000085990 ENSMUST00000132432 Gm16731 processed_transcript Interval_53766 chr14 61614057 61615084 + 0 NA intron (ENSMUSG00000097589.9, intron 5 of 6) processed_transcript-intron (ENSMUSG00000097589.9, intron 5 of 6) 7113 ENSMUSG00000046168.9 ENSMUSG00000046168 ENSMUST00000051184 Kcnrg protein_coding Interval_116145 chr4 108108921 108109265 + 0 NA intron (ENSMUSG00000028603.15, intron 2 of 7) protein_coding-intron (ENSMUSG00000028603.15, intron 2 of 15) 9411 ENSMUSG00000028603.15 ENSMUSG00000028603 ENSMUST00000130776 Scp2 protein_coding Interval_36314 chr12 41067817 41068211 + 0 NA promoter-TSS (ENSMUSG00000056899.10) protein_coding-promoter-TSS (ENSMUSG00000056899.10) -23075 ENSMUSG00000113994.1 ENSMUSG00000113994 ENSMUST00000220956 Gm47375 antisense Interval_41490 chr12 115072309 115072484 + 0 NA Intergenic Intergenic -4394 ENSMUSG00000102364.1 ENSMUSG00000102364 ENSMUST00000194257 Ighv8-5 IG_V_gene Interval_31288 chr11 99364386 99365028 + 0 NA TTS (ENSMUSG00000055937.1) protein_coding-TTS (ENSMUSG00000055937.1) 10196 ENSMUSG00000055937.1 ENSMUSG00000055937 ENSMUST00000006963 Krt28 protein_coding Interval_153477 chr7 145076158 145076905 + 0 NA Intergenic Intergenic -86465 ENSMUSG00000108967.1 ENSMUSG00000108967 ENSMUST00000207878 Gm45181 lincRNA Interval_65081 chr16 18909925 18910193 + 0 NA intron (ENSMUSG00000099908.1, intron 6 of 23) protein_coding-intron (ENSMUSG00000022702.16, intron 5 of 24) -27342 ENSMUSG00000082130.1 ENSMUSG00000082130 ENSMUST00000120899 Gm15799 processed_pseudogene Interval_61250 chr15 80225041 80226052 + 0 NA Intergenic Intergenic 2868 ENSMUSG00000115962.1 ENSMUSG00000115962 ENSMUST00000231034 4930588D02Rik TEC Interval_91233 chr2 36203205 36205473 + 0 NA TTS (ENSMUSG00000085141.1) processed_transcript-TTS (ENSMUSG00000085141.1) 1517 ENSMUSG00000085141.1 ENSMUSG00000085141 ENSMUST00000128242 Gm13429 processed_transcript Interval_90319 chr2 29756843 29757746 + 0 NA Intergenic Intergenic -2018 ENSMUSG00000075425.10 ENSMUSG00000075425 ENSMUST00000113809 Gm13547 protein_coding Interval_119362 chr4 137200549 137201412 + 0 NA Intergenic Intergenic 16915 ENSMUSG00000092848.1 ENSMUSG00000092848 ENSMUST00000175107 Gm23263 miRNA Interval_132422 chr5 144841317 144841719 + 0 NA intron (ENSMUSG00000045482.16, intron 60 of 70) protein_coding-intron (ENSMUSG00000045482.16, intron 59 of 69) 55298 ENSMUSG00000098822.1 ENSMUSG00000098822 ENSMUST00000183852 Mir7039 miRNA Interval_123104 chr5 29735520 29736471 + 0 NA promoter-TSS (ENSMUSG00000029131.14) protein_coding-promoter-TSS (ENSMUSG00000029131.14) 6 ENSMUSG00000029131.14 ENSMUSG00000029131 ENSMUST00000139126 Dnajb6 protein_coding Interval_129356 chr5 119442855 119443440 + 0 NA Intergenic Intergenic 84807 ENSMUSG00000106938.1 ENSMUSG00000106938 ENSMUST00000201435 Gm31314 lincRNA Interval_57464 chr15 11398911 11400233 + 0 NA promoter-TSS (ENSMUSG00000022241.6) protein_coding-promoter-TSS (ENSMUSG00000022241.6) 29 ENSMUSG00000022241.6 ENSMUSG00000022241 ENSMUST00000226904 Tars protein_coding Interval_76183 chr17 76284383 76284906 + 0 NA exon (ENSMUSG00000066958.1, exon 1 of 1) processed_pseudogene-exon (ENSMUSG00000066958.1, exon 1 of 1) 217 ENSMUSG00000066958.1 ENSMUSG00000066958 ENSMUST00000086601 Gm16391 processed_pseudogene Interval_162314 chr8 127008661 127009074 + 0 NA Intergenic Intergenic -26635 ENSMUSG00000110648.1 ENSMUSG00000110648 ENSMUST00000211855 Gm38574 processed_pseudogene Interval_23742 chr11 25685107 25685323 + 0 NA promoter-TSS (ENSMUSG00000064761.1) snoRNA-promoter-TSS (ENSMUSG00000064761.1) 75 ENSMUSG00000064761.1 ENSMUSG00000064761 ENSMUST00000082827 Gm23514 snoRNA Interval_150169 chr7 107567085 107567854 + 0 NA promoter-TSS (ENSMUSG00000051041.8) protein_coding-promoter-TSS (ENSMUSG00000051041.8) -297 ENSMUSG00000051041.8 ENSMUSG00000051041 ENSMUST00000239087 Olfml1 protein_coding Interval_108673 chr3 129990161 129990393 + 0 NA TTS (ENSMUSG00000001052.15) protein_coding-TTS (ENSMUSG00000001052.15) 220 ENSMUSG00000001052.15 ENSMUSG00000001052 ENSMUST00000168675 Sec24b protein_coding Interval_145424 chr7 34681995 34682727 + 0 NA intron (ENSMUSG00000060402.8, intron 1 of 2) protein_coding-intron (ENSMUSG00000060402.8, intron 2 of 3) -8362 ENSMUSG00000087127.1 ENSMUSG00000087127 ENSMUST00000126294 Gm12756 lincRNA Interval_59007 chr15 41646022 41646875 + 0 NA intron (ENSMUSG00000022307.16, intron 2 of 15) protein_coding-intron (ENSMUSG00000022307.16, intron 2 of 15) 142463 ENSMUSG00000097232.1 ENSMUSG00000097232 ENSMUST00000180418 Gm26854 antisense Interval_61566 chr15 82423441 82423688 + 0 NA promoter-TSS (ENSMUSG00000116419.1) unprocessed_pseudogene-promoter-TSS (ENSMUSG00000116419.1) -117 ENSMUSG00000116419.1 ENSMUSG00000116419 ENSMUST00000229517 Gm19267 unprocessed_pseudogene Interval_165388 chr9 47275276 47275667 + 0 NA intron (ENSMUSG00000109844.2, intron 3 of 4) lincRNA-intron (ENSMUSG00000109844.2, intron 4 of 5) -4728 ENSMUSG00000109844.2 ENSMUSG00000109844 ENSMUST00000209906 Gm31816 lincRNA Interval_45492 chr13 55444401 55445874 + 0 NA promoter-TSS (ENSMUSG00000074886.11) protein_coding-promoter-TSS (ENSMUSG00000074886.11) -320 ENSMUSG00000074886.11 ENSMUSG00000074886 ENSMUST00000224532 Grk6 protein_coding Interval_86720 chr19 43027056 43028083 + 0 NA intron (ENSMUSG00000074852.4, intron 3 of 11) protein_coding-intron (ENSMUSG00000074852.4, intron 3 of 11) 133333 ENSMUSG00000089377.1 ENSMUSG00000089377 ENSMUST00000158752 Gm22135 rRNA Interval_96000 chr2 119085558 119086821 + 0 NA intron (ENSMUSG00000027326.13, intron 12 of 23) protein_coding-intron (ENSMUSG00000027326.13, intron 11 of 22) 39042 ENSMUSG00000027326.13 ENSMUSG00000027326 ENSMUST00000028802 Knl1 protein_coding Interval_165669 chr9 50803508 50803850 + 0 NA intron (ENSMUSG00000032059.13, intron 1 of 4) protein_coding-intron (ENSMUSG00000032059.13, intron 10 of 14) 1610 ENSMUSG00000032059.13 ENSMUSG00000032059 ENSMUST00000162596 Alg9 protein_coding Interval_58319 chr15 32333395 32333718 + 0 NA intron (ENSMUSG00000022231.10, intron 1 of 7) protein_coding-intron (ENSMUSG00000022231.10, intron 1 of 22) 88731 ENSMUSG00000022231.10 ENSMUSG00000022231 ENSMUST00000227429 Sema5a protein_coding Interval_12881 chr10 7191851 7192697 + 0 NA intron (ENSMUSG00000015202.13, intron 1 of 12) protein_coding-intron (ENSMUSG00000015202.13, intron 1 of 12) -56768 ENSMUSG00000015202.13 ENSMUSG00000015202 ENSMUST00000015346 Cnksr3 protein_coding Interval_77707 chr17 94530223 94530721 + 0 NA Intergenic Intergenic -77713 ENSMUSG00000117476.1 ENSMUSG00000117476 ENSMUST00000234959 Gm9416 processed_pseudogene Interval_27533 chr11 68494926 68495570 + 0 NA exon (ENSMUSG00000020901.13, exon 16 of 19) protein_coding-exon (ENSMUSG00000020901.13, exon 16 of 19) -7843 ENSMUSG00000046207.14 ENSMUSG00000046207 ENSMUST00000131669 Pik3r6 protein_coding Interval_116246 chr4 109036071 109037256 + 0 NA intron (ENSMUSG00000053510.12, intron 3 of 7) protein_coding-intron (ENSMUSG00000053510.12, intron 10 of 30) 12457 ENSMUSG00000053510.12 ENSMUSG00000053510 ENSMUST00000125063 Nrd1 protein_coding Interval_94755 chr2 94019061 94019341 + 0 NA Intergenic Intergenic -8449 ENSMUSG00000040174.14 ENSMUSG00000040174 ENSMUST00000130289 Alkbh3 protein_coding Interval_55379 chr14 86326192 86326533 + 0 NA Intergenic Intergenic 6077 ENSMUSG00000115089.1 ENSMUSG00000115089 ENSMUST00000226132 Gm4350 processed_pseudogene Interval_173748 chrX 103441102 103441432 + 0 NA intron (ENSMUSG00000085715.2, intron 1 of 3) antisense-intron (ENSMUSG00000085715.2, intron 1 of 3) -6455 ENSMUSG00000085715.2 ENSMUSG00000085715 ENSMUST00000211291 Tsix antisense Interval_105187 chr3 83588915 83589449 + 0 NA Intergenic Intergenic -15060 ENSMUSG00000101334.1 ENSMUSG00000101334 ENSMUST00000185938 1700028M03Rik lincRNA Interval_1715 chr1 32231279 32231731 + 0 NA intron (ENSMUSG00000026058.11, intron 1 of 1) protein_coding-intron (ENSMUSG00000026058.11, intron 1 of 8) -18266 ENSMUSG00000064688.1 ENSMUSG00000064688 ENSMUST00000082754 Gm25814 snRNA Interval_9098 chr1 153571694 153572362 + 0 NA Intergenic Intergenic -22317 ENSMUSG00000042684.8 ENSMUSG00000042684 ENSMUST00000187747 Npl protein_coding Interval_11897 chr1 186884852 186885180 + 0 NA Intergenic Intergenic -41946 ENSMUSG00000103503.1 ENSMUSG00000103503 ENSMUST00000194671 1700023G09Rik lincRNA Interval_164045 chr9 31107448 31109333 + 0 NA intron (ENSMUSG00000031995.9, intron 1 of 5) protein_coding-intron (ENSMUSG00000031995.9, intron 2 of 18) -4852 ENSMUSG00000031995.9 ENSMUSG00000031995 ENSMUST00000123557 St14 protein_coding Interval_168317 chr9 78642598 78642869 + 0 NA intron (ENSMUSG00000046186.8, intron 5 of 32) protein_coding-intron (ENSMUSG00000046186.8, intron 5 of 32) -12605 ENSMUSG00000091147.1 ENSMUSG00000091147 ENSMUST00000171278 4921509A06Rik antisense Interval_30021 chr11 88736909 88737349 + 0 NA Intergenic Intergenic 6240 ENSMUSG00000085646.1 ENSMUSG00000085646 ENSMUST00000134567 Gm11493 lincRNA Interval_47484 chr13 85195609 85196020 + 0 NA intron (ENSMUSG00000021548.10, intron 2 of 4) protein_coding-intron (ENSMUSG00000021548.10, intron 2 of 8) -15508 ENSMUSG00000021548.10 ENSMUSG00000021548 ENSMUST00000166932 Ccnh protein_coding Interval_82565 chr18 75186992 75187857 + 0 NA intron (ENSMUSG00000035765.10, intron 13 of 16) protein_coding-intron (ENSMUSG00000035765.10, intron 13 of 16) -4610 ENSMUSG00000094153.2 ENSMUSG00000094153 ENSMUST00000179328 Gm8807 processed_pseudogene Interval_95132 chr2 104143559 104144662 + 0 NA exon (ENSMUSG00000068373.15, exon 21 of 21) protein_coding-exon (ENSMUSG00000068373.15, exon 21 of 21) 21341 ENSMUSG00000032671.5 ENSMUSG00000032671 ENSMUST00000040374 A930018P22Rik protein_coding Interval_78520 chr18 14109379 14109691 + 0 NA Intergenic Intergenic -122774 ENSMUSG00000117633.1 ENSMUSG00000117633 ENSMUST00000234218 8430422H06Rik lincRNA Interval_62034 chr15 86015992 86016493 + 0 NA intron (ENSMUSG00000016028.11, intron 1 of 34) protein_coding-intron (ENSMUSG00000016028.11, intron 1 of 34) -58491 ENSMUSG00000035900.18 ENSMUSG00000035900 ENSMUST00000147286 Gramd4 protein_coding Interval_133728 chr6 10185559 10186499 + 0 NA Intergenic Intergenic -13175 ENSMUSG00000107459.1 ENSMUSG00000107459 ENSMUST00000203122 Gm5110 processed_pseudogene Interval_66785 chr16 37611381 37611916 + 0 NA exon (ENSMUSG00000022821.13, exon 5 of 5) protein_coding-exon (ENSMUSG00000022821.13, exon 5 of 5) -15458 ENSMUSG00000116723.1 ENSMUSG00000116723 ENSMUST00000231668 Gm46559 antisense Interval_21080 chr10 125988325 125988760 + 0 NA intron (ENSMUSG00000020105.9, intron 1 of 1) protein_coding-intron (ENSMUSG00000020105.9, intron 3 of 18) 22308 ENSMUSG00000020105.9 ENSMUSG00000020105 ENSMUST00000219974 Lrig3 protein_coding Interval_106857 chr3 101344891 101345590 + 0 NA Intergenic Intergenic -31843 ENSMUSG00000042035.11 ENSMUSG00000042035 ENSMUST00000195164 Igsf3 protein_coding Interval_115688 chr4 102226850 102227198 + 0 NA intron (ENSMUSG00000028525.16, intron 3 of 6) protein_coding-intron (ENSMUSG00000028525.16, intron 3 of 16) -28206 ENSMUSG00000028525.16 ENSMUSG00000028525 ENSMUST00000106901 Pde4b protein_coding Interval_132005 chr5 142211661 142212889 + 0 NA exon (ENSMUSG00000039683.16, exon 41 of 41) protein_coding-exon (ENSMUSG00000039683.16, exon 41 of 41) -70831 ENSMUSG00000097947.1 ENSMUSG00000097947 ENSMUST00000182990 Gm26970 processed_pseudogene Interval_152678 chr7 136146135 136146353 + 0 NA Intergenic Intergenic 27052 ENSMUSG00000110396.1 ENSMUSG00000110396 ENSMUST00000209653 Gm36737 lincRNA Interval_40316 chr12 103547507 103548947 + 0 NA intron (ENSMUSG00000021209.12, intron 2 of 25) protein_coding-intron (ENSMUSG00000021209.12, intron 2 of 24) -33171 ENSMUSG00000021209.12 ENSMUSG00000021209 ENSMUST00000190151 Ppp4r4 protein_coding Interval_52029 chr14 34709294 34710681 + 0 NA intron (ENSMUSG00000041408.18, intron 1 of 2) protein_coding-intron (ENSMUSG00000041408.18, intron 4 of 18) -27284 ENSMUSG00000041408.18 ENSMUSG00000041408 ENSMUST00000174559 Wapl protein_coding Interval_58005 chr15 25959287 25959938 + 0 NA intron (ENSMUSG00000022270.16, intron 1 of 6) protein_coding-intron (ENSMUSG00000022270.16, intron 3 of 8) 11385 ENSMUSG00000098719.1 ENSMUSG00000098719 ENSMUST00000184098 Mir7212 miRNA Interval_108438 chr3 127210480 127210806 + 0 NA intron (ENSMUSG00000032826.19, intron 1 of 31) protein_coding-intron (ENSMUSG00000032826.19, intron 3 of 14) -26670 ENSMUSG00000105202.1 ENSMUSG00000105202 ENSMUST00000197856 C230031I18Rik TEC Interval_10219 chr1 167273833 167275152 + 0 NA intron (ENSMUSG00000026558.13, intron 1 of 2) protein_coding-intron (ENSMUSG00000026558.13, intron 1 of 6) -10576 ENSMUSG00000102909.1 ENSMUSG00000102909 ENSMUST00000193383 Gm2453 lincRNA Interval_86936 chr19 45097645 45098450 + 0 NA intron (ENSMUSG00000117848.1, intron 3 of 4) lincRNA-intron (ENSMUSG00000117848.1, intron 3 of 4) 10996 ENSMUSG00000117848.1 ENSMUSG00000117848 ENSMUST00000237139 Gm35867 lincRNA Interval_110122 chr3 153489070 153489286 + 0 NA intron (ENSMUSG00000052544.9, intron 1 of 2) protein_coding-intron (ENSMUSG00000052544.9, intron 1 of 2) -10968 ENSMUSG00000104908.1 ENSMUSG00000104908 ENSMUST00000197297 1700015C17Rik sense_intronic Interval_62301 chr15 89572489 89573523 + 0 NA intron (ENSMUSG00000022622.5, intron 3 of 4) protein_coding-intron (ENSMUSG00000022622.5, intron 3 of 4) 4643 ENSMUSG00000022622.5 ENSMUSG00000022622 ENSMUST00000230978 Acr protein_coding Interval_122899 chr5 27048075 27050616 + 0 NA promoter-TSS (ENSMUSG00000061576.15) protein_coding-promoter-TSS (ENSMUSG00000061576.15) -48 ENSMUSG00000061576.15 ENSMUSG00000061576 ENSMUST00000134175 Dpp6 protein_coding Interval_100958 chr2 173633090 173634711 + 0 NA intron (ENSMUSG00000055897.13, intron 2 of 14) transcribed_unprocessed_pseudogene-intron (ENSMUSG00000055897.13, intron 1 of 1) -25860 ENSMUSG00000027519.10 ENSMUSG00000027519 ENSMUST00000109110 Rab22a protein_coding Interval_39181 chr12 85645869 85646285 + 0 NA Intergenic Intergenic -16365 ENSMUSG00000113249.1 ENSMUSG00000113249 ENSMUST00000222443 Gm33312 processed_pseudogene Interval_138467 chr6 88456134 88457056 + 0 NA Intergenic Intergenic -9132 ENSMUSG00000030079.15 ENSMUSG00000030079 ENSMUST00000129035 Ruvbl1 protein_coding Interval_168763 chr9 86761640 86763376 + 0 NA Intergenic Intergenic 18859 ENSMUSG00000033491.13 ENSMUSG00000033491 ENSMUST00000036426 Prss35 protein_coding Interval_126329 chr5 86757275 86757494 + 0 NA exon (ENSMUSG00000089851.1, exon 2 of 2) antisense-exon (ENSMUSG00000089851.1, exon 2 of 2) -11569 ENSMUSG00000054537.8 ENSMUSG00000054537 ENSMUST00000161306 Tmprss11e protein_coding Interval_24052 chr11 29797094 29797605 + 0 NA intron (ENSMUSG00000044072.14, intron 21 of 41) protein_coding-intron (ENSMUSG00000044072.14, intron 21 of 41) 5750 ENSMUSG00000044072.14 ENSMUSG00000044072 ENSMUST00000109452 Eml6 protein_coding Interval_45304 chr13 54181139 54181315 + 0 NA Intergenic Intergenic -32780 ENSMUSG00000034987.4 ENSMUSG00000034987 ENSMUST00000211742 Hrh2 protein_coding Interval_7204 chr1 127789853 127790127 + 0 NA intron (ENSMUSG00000026349.14, intron 2 of 4) protein_coding-intron (ENSMUSG00000026349.14, intron 2 of 8) -6581 ENSMUSG00000026349.14 ENSMUSG00000026349 ENSMUST00000153359 Ccnt2 protein_coding Interval_71783 chr17 26066160 26066604 + 0 NA intron (ENSMUSG00000037098.18, intron 1 of 2) protein_coding-intron (ENSMUSG00000037098.18, intron 1 of 13) -6764 ENSMUSG00000118105.1 ENSMUSG00000118105 ENSMUST00000237108 Gm17814 processed_pseudogene Interval_83894 chr19 5406119 5407714 + 0 NA promoter-TSS (ENSMUSG00000086938.9) antisense-promoter-TSS (ENSMUSG00000086938.9) 176 ENSMUSG00000086938.9 ENSMUSG00000086938 ENSMUST00000174415 4930481A15Rik antisense Interval_141326 chr6 127251669 127252643 + 0 NA intron (ENSMUSG00000107013.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000107013.1, intron 1 of 1) 2488 ENSMUSG00000107013.1 ENSMUSG00000107013 ENSMUST00000202533 Gm43635 lincRNA Interval_151229 chr7 119880978 119881285 + 0 NA intron (ENSMUSG00000048787.13, intron 1 of 2) protein_coding-intron (ENSMUSG00000048787.13, intron 1 of 2) -14736 ENSMUSG00000030922.12 ENSMUSG00000030922 ENSMUST00000207680 Lyrm1 protein_coding Interval_104898 chr3 78795820 78796562 + 0 NA Intergenic Intergenic 37572 ENSMUSG00000102341.1 ENSMUSG00000102341 ENSMUST00000194471 Gm18952 processed_pseudogene Interval_6639 chr1 118465991 118466602 + 0 NA intron (ENSMUSG00000064302.13, intron 4 of 6) protein_coding-intron (ENSMUSG00000064302.13, intron 6 of 39) -7031 ENSMUSG00000080542.1 ENSMUSG00000080542 ENSMUST00000116892 Gm22710 snRNA Interval_18778 chr10 90622705 90623115 + 0 NA intron (ENSMUSG00000058589.14, intron 15 of 25) protein_coding-intron (ENSMUSG00000058589.14, intron 1 of 11) -106050 ENSMUSG00000112153.1 ENSMUSG00000112153 ENSMUST00000218673 Gm47591 sense_intronic Interval_52979 chr14 52555956 52557222 + 0 NA Intergenic Intergenic -10609 ENSMUSG00000076759.3 ENSMUSG00000076759 ENSMUST00000103568 Trav2 TR_V_gene Interval_78450 chr18 12909922 12910111 + 0 NA intron (ENSMUSG00000044252.18, intron 6 of 7) protein_coding-intron (ENSMUSG00000044252.18, intron 6 of 27) 11589 ENSMUSG00000080866.1 ENSMUSG00000080866 ENSMUST00000118252 Gm5687 processed_pseudogene Interval_29657 chr11 85850865 85851528 + 0 NA promoter-TSS (ENSMUSG00000069785.4) protein_coding-promoter-TSS (ENSMUSG00000069785.4) -863 ENSMUSG00000069785.4 ENSMUSG00000069785 ENSMUST00000146433 Gm11444 protein_coding Interval_155739 chr8 36598136 36598340 + 0 NA intron (ENSMUSG00000031523.16, intron 6 of 17) protein_coding-intron (ENSMUSG00000031523.16, intron 2 of 13) 109047 ENSMUSG00000039620.17 ENSMUSG00000039620 ENSMUST00000125492 Trmt9b protein_coding Interval_12103 chr1 189760582 189762209 + 0 NA intron (ENSMUSG00000026604.17, intron 1 of 9) protein_coding-intron (ENSMUSG00000026604.17, intron 1 of 18) -65835 ENSMUSG00000102248.1 ENSMUSG00000102248 ENSMUST00000192214 Gm30280 processed_pseudogene Interval_110444 chr3 158236337 158236565 + 0 NA intron (ENSMUSG00000028176.13, intron 8 of 24) protein_coding-intron (ENSMUSG00000028176.13, intron 9 of 27) 29582 ENSMUSG00000104647.1 ENSMUSG00000104647 ENSMUST00000199292 Gm43485 TEC Interval_75924 chr17 73096466 73096982 + 0 NA Intergenic Intergenic -29703 ENSMUSG00000054469.14 ENSMUSG00000054469 ENSMUST00000134149 Lclat1 protein_coding Interval_93556 chr2 74136017 74136759 + 0 NA intron (ENSMUSG00000084791.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000084791.1, intron 1 of 2) 631 ENSMUSG00000084791.1 ENSMUSG00000084791 ENSMUST00000132332 Gm13667 lincRNA Interval_30606 chr11 95413707 95415247 + 0 NA intron (ENSMUSG00000057522.15, intron 2 of 4) protein_coding-intron (ENSMUSG00000057522.15, intron 1 of 9) 29720 ENSMUSG00000020873.15 ENSMUSG00000020873 ENSMUST00000143090 Slc35b1 protein_coding Interval_117990 chr4 127503924 127504329 + 0 NA intron (ENSMUSG00000087470.2, intron 2 of 4) lincRNA-intron (ENSMUSG00000087470.2, intron 2 of 5) 29224 ENSMUSG00000087470.2 ENSMUSG00000087470 ENSMUST00000146587 A630031M04Rik lincRNA Interval_82686 chr18 75924522 75926154 + 0 NA intron (ENSMUSG00000044646.15, intron 2 of 5) protein_coding-intron (ENSMUSG00000044646.15, intron 2 of 4) 90339 ENSMUSG00000118311.1 ENSMUSG00000118311 ENSMUST00000238127 1700003O11Rik antisense Interval_17640 chr10 78417476 78417910 + 0 NA Intergenic Intergenic -4838 ENSMUSG00000061032.9 ENSMUSG00000061032 ENSMUST00000217824 Rrp1 protein_coding Interval_109402 chr3 141835476 141835953 + 0 NA TTS (ENSMUSG00000059921.15) protein_coding-TTS (ENSMUSG00000059921.15) 95794 ENSMUSG00000052430.15 ENSMUSG00000052430 ENSMUST00000106230 Bmpr1b protein_coding Interval_95671 chr2 113911154 113912194 + 0 NA Intergenic Intergenic 8888 ENSMUSG00000096006.1 ENSMUSG00000096006 ENSMUST00000178049 Gm21596 processed_pseudogene Interval_53825 chr14 62341912 62343310 + 0 NA intron (ENSMUSG00000021932.13, intron 1 of 7) protein_coding-intron (ENSMUSG00000021932.13, intron 1 of 10) 10486 ENSMUSG00000021932.13 ENSMUSG00000021932 ENSMUST00000156608 Rnaseh2b protein_coding Interval_147188 chr7 64238599 64239108 + 0 NA intron (ENSMUSG00000030523.18, intron 20 of 26) protein_coding-intron (ENSMUSG00000030523.18, intron 20 of 26) -6171 ENSMUSG00000030523.18 ENSMUSG00000030523 ENSMUST00000206848 Trpm1 protein_coding Interval_59469 chr15 53353680 53354123 + 0 NA Intergenic Intergenic -30018 ENSMUSG00000087805.2 ENSMUSG00000087805 ENSMUST00000157180 Gm27926 snRNA Interval_60078 chr15 64648780 64649009 + 0 NA Intergenic Intergenic -15386 ENSMUSG00000115328.1 ENSMUSG00000115328 ENSMUST00000227641 Gm30691 lincRNA Interval_164434 chr9 37004303 37005186 + 0 NA intron (ENSMUSG00000035934.16, intron 2 of 4) protein_coding-intron (ENSMUSG00000035934.16, intron 2 of 12) -11014 ENSMUSG00000093721.1 ENSMUSG00000093721 ENSMUST00000176020 Gm3896 antisense Interval_26580 chr11 59028298 59029568 + 0 NA exon (ENSMUSG00000061462.18, exon 83 of 90) protein_coding-exon (ENSMUSG00000061462.18, exon 83 of 90) 26023 ENSMUSG00000072902.4 ENSMUSG00000072902 ENSMUST00000101162 Gm10435 antisense Interval_72239 chr17 28756218 28757508 + 0 NA Intergenic Intergenic -12434 ENSMUSG00000004864.13 ENSMUSG00000004864 ENSMUST00000004986 Mapk13 protein_coding Interval_17441 chr10 76744273 76744734 + 0 NA Intergenic Intergenic -14230 ENSMUSG00000112291.1 ENSMUSG00000112291 ENSMUST00000218963 Gm48276 lincRNA Interval_125995 chr5 76708058 76708735 + 0 NA intron (ENSMUSG00000036377.19, intron 1 of 11) protein_coding-intron (ENSMUSG00000036377.19, intron 1 of 4) 34117 ENSMUSG00000083874.1 ENSMUSG00000083874 ENSMUST00000121248 Gm7494 processed_pseudogene Interval_103489 chr3 44430002 44430283 + 0 NA Intergenic Intergenic 63761 ENSMUSG00000104013.1 ENSMUSG00000104013 ENSMUST00000193109 Gm37365 processed_pseudogene Interval_147477 chr7 67619481 67620675 + 0 NA promoter-TSS (ENSMUSG00000030556.13) protein_coding-promoter-TSS (ENSMUSG00000030556.13) -80 ENSMUSG00000030556.13 ENSMUSG00000030556 ENSMUST00000189836 Lrrc28 protein_coding Interval_74887 chr17 57073707 57074180 + 0 NA intron (ENSMUSG00000002668.8, intron 2 of 4) protein_coding-intron (ENSMUSG00000002668.8, intron 9 of 23) -2146 ENSMUSG00000002668.8 ENSMUSG00000002668 ENSMUST00000232938 Dennd1c protein_coding Interval_128951 chr5 116273174 116273374 + 0 NA intron (ENSMUSG00000043913.14, intron 1 of 5) protein_coding-intron (ENSMUSG00000043913.14, intron 1 of 13) 15613 ENSMUSG00000086055.1 ENSMUSG00000086055 ENSMUST00000126326 Gm13837 antisense Interval_173237 chrX 75084428 75085340 + 0 NA promoter-TSS (ENSMUSG00000032750.13) protein_coding-promoter-TSS (ENSMUSG00000032750.13) 574 ENSMUSG00000032750.13 ENSMUSG00000032750 ENSMUST00000129495 Gab3 protein_coding Interval_65439 chr16 22358145 22359343 + 0 NA Intergenic Intergenic 43085 ENSMUSG00000013089.15 ENSMUSG00000013089 ENSMUST00000170393 Etv5 protein_coding Interval_28528 chr11 76524856 76525381 + 0 NA intron (ENSMUSG00000017631.19, intron 1 of 22) protein_coding-intron (ENSMUSG00000017631.19, intron 1 of 22) 11049 ENSMUSG00000080763.2 ENSMUSG00000080763 ENSMUST00000119724 Gm12341 processed_pseudogene Interval_157154 chr8 66510838 66512969 + 0 NA exon (ENSMUSG00000025519.5, exon 1 of 1) protein_coding-exon (ENSMUSG00000025519.5, exon 1 of 1) 144 ENSMUSG00000025519.5 ENSMUSG00000025519 ENSMUST00000183187 Tktl2 protein_coding Interval_169503 chr9 98554807 98555011 + 0 NA Intergenic Intergenic 8702 ENSMUSG00000051074.4 ENSMUSG00000051074 ENSMUST00000058992 4930579K19Rik processed_transcript Interval_141346 chr6 127502454 127502674 + 0 NA Intergenic Intergenic 16771 ENSMUSG00000106962.1 ENSMUSG00000106962 ENSMUST00000202455 Gm43633 TEC Interval_127840 chr5 108119913 108120988 + 0 NA intron (ENSMUSG00000063406.11, intron 2 of 2) protein_coding-intron (ENSMUSG00000063406.11, intron 2 of 2) 12080 ENSMUSG00000063406.11 ENSMUSG00000063406 ENSMUST00000119784 Tmed5 protein_coding Interval_136299 chr6 52767161 52767413 + 0 NA TTS (ENSMUSG00000004535.12) protein_coding-TTS (ENSMUSG00000004535.12) -44357 ENSMUSG00000108036.1 ENSMUSG00000108036 ENSMUST00000203787 Gm43967 processed_pseudogene Interval_104122 chr3 58794340 58794563 + 0 NA intron (ENSMUSG00000101860.4, intron 5 of 6) lincRNA-intron (ENSMUSG00000097725.4, intron 5 of 5) 17492 ENSMUSG00000101860.4 ENSMUSG00000101860 ENSMUST00000191233 Mindy4b-ps protein_coding Interval_28660 chr11 77624425 77625580 + 0 NA Intergenic Intergenic -14852 ENSMUSG00000082646.1 ENSMUSG00000082646 ENSMUST00000121688 Gm12732 processed_pseudogene Interval_38910 chr12 83742065 83742404 + 0 NA promoter-TSS (ENSMUSG00000113881.1) processed_pseudogene-promoter-TSS (ENSMUSG00000113881.1) -528 ENSMUSG00000113881.1 ENSMUSG00000113881 ENSMUST00000221529 Gm18592 processed_pseudogene Interval_147835 chr7 73984717 73985110 + 0 NA intron (ENSMUSG00000025789.9, intron 1 of 5) protein_coding-intron (ENSMUSG00000025789.9, intron 1 of 5) 28777 ENSMUSG00000025789.9 ENSMUSG00000025789 ENSMUST00000191970 St8sia2 protein_coding Interval_155384 chr8 33066330 33066772 + 0 NA Intergenic Intergenic -10460 ENSMUSG00000110214.1 ENSMUSG00000110214 ENSMUST00000211548 Gm45587 lincRNA Interval_148169 chr7 79607003 79607881 + 0 NA intron (ENSMUSG00000030549.6, intron 1 of 1) protein_coding-intron (ENSMUSG00000030549.6, intron 2 of 10) -3766 ENSMUSG00000108318.1 ENSMUSG00000108318 ENSMUST00000206746 Gm45170 TEC Interval_91108 chr2 35149900 35150132 + 0 NA intron (ENSMUSG00000057110.15, intron 22 of 42) protein_coding-intron (ENSMUSG00000057110.15, intron 22 of 43) 4920 ENSMUSG00000057110.15 ENSMUSG00000057110 ENSMUST00000143807 Cntrl protein_coding Interval_166357 chr9 58567856 58568115 + 0 NA Intergenic Intergenic 13186 ENSMUSG00000103486.1 ENSMUSG00000103486 ENSMUST00000193528 Gm10657 TEC Interval_40066 chr12 100967556 100967937 + 0 NA intron (ENSMUSG00000021182.16, intron 8 of 29) protein_coding-intron (ENSMUSG00000021182.16, intron 8 of 29) 25889 ENSMUSG00000097160.2 ENSMUSG00000097160 ENSMUST00000221309 A630072L19Rik antisense Interval_9912 chr1 164053504 164053769 + 0 NA exon (ENSMUSG00000026582.6, exon 9 of 14) protein_coding-exon (ENSMUSG00000026582.6, exon 9 of 14) 5402 ENSMUSG00000026582.6 ENSMUSG00000026582 ENSMUST00000027874 Sele protein_coding Interval_41065 chr12 110920280 110921798 + 0 NA intron (ENSMUSG00000021275.16, intron 5 of 10) protein_coding-intron (ENSMUSG00000021275.16, intron 5 of 19) 22925 ENSMUSG00000096942.1 ENSMUSG00000096942 ENSMUST00000181233 Rps19-ps6 processed_pseudogene Interval_126008 chr5 76808512 76808821 + 0 NA intron (ENSMUSG00000036377.19, intron 3 of 11) protein_coding-intron (ENSMUSG00000036377.19, intron 2 of 10) -66153 ENSMUSG00000083874.1 ENSMUSG00000083874 ENSMUST00000121248 Gm7494 processed_pseudogene Interval_157473 chr8 70587984 70588284 + 0 NA intron (ENSMUSG00000070002.7, intron 8 of 11) protein_coding-intron (ENSMUSG00000070002.7, intron 8 of 11) -7833 ENSMUSG00000019139.10 ENSMUSG00000019139 ENSMUST00000211773 Isyna1 protein_coding Interval_125961 chr5 76231523 76231792 + 0 NA TTS (ENSMUSG00000106831.1) processed_pseudogene-TTS (ENSMUSG00000106831.1) 1413 ENSMUSG00000106831.1 ENSMUSG00000106831 ENSMUST00000201768 Ube2n-ps1 processed_pseudogene Interval_122832 chr5 25891531 25891767 + 0 NA Intergenic Intergenic 34641 ENSMUSG00000105052.4 ENSMUSG00000105052 ENSMUST00000167847 Gm21655 processed_transcript Interval_54087 chr14 65139881 65140419 + 0 NA intron (ENSMUSG00000021978.9, intron 1 of 2) protein_coding-intron (ENSMUSG00000021978.9, intron 1 of 2) -26764 ENSMUSG00000114944.1 ENSMUSG00000114944 ENSMUST00000224037 Gm48299 processed_pseudogene Interval_47127 chr13 76055438 76056973 + 0 NA exon (ENSMUSG00000045509.7, exon 1 of 1) protein_coding-exon (ENSMUSG00000045509.7, exon 1 of 1) 791 ENSMUSG00000045509.7 ENSMUSG00000045509 ENSMUST00000056130 Gpr150 protein_coding Interval_104472 chr3 66078017 66078601 + 0 NA intron (ENSMUSG00000027831.9, intron 4 of 5) protein_coding-intron (ENSMUSG00000027831.9, intron 12 of 13) -8375 ENSMUSG00000104189.1 ENSMUSG00000104189 ENSMUST00000192618 Gm37822 TEC Interval_170738 chr9 110439469 110439714 + 0 NA intron (ENSMUSG00000054792.15, intron 3 of 8) protein_coding-intron (ENSMUSG00000054792.15, intron 4 of 9) 15810 ENSMUSG00000054792.15 ENSMUSG00000054792 ENSMUST00000198327 Klhl18 protein_coding Interval_20342 chr10 117004260 117004871 + 0 NA intron (ENSMUSG00000020169.4, intron 7 of 9) protein_coding-intron (ENSMUSG00000020169.4, intron 7 of 9) 18251 ENSMUSG00000020169.4 ENSMUSG00000020169 ENSMUST00000020378 Best3 protein_coding Interval_2222 chr1 37151600 37152074 + 0 NA intron (ENSMUSG00000050122.19, intron 19 of 26) protein_coding-intron (ENSMUSG00000050122.19, intron 17 of 24) -18573 ENSMUSG00000103603.1 ENSMUSG00000103603 ENSMUST00000195303 Gm37020 antisense Interval_31638 chr11 101928023 101928804 + 0 NA Intergenic Intergenic -11088 ENSMUSG00000082171.1 ENSMUSG00000082171 ENSMUST00000120378 Rpl27-ps2 processed_pseudogene Interval_124418 chr5 45820428 45820716 + 0 NA intron (ENSMUSG00000015882.18, intron 1 of 4) protein_coding-intron (ENSMUSG00000015882.18, intron 1 of 6) 37043 ENSMUSG00000015882.18 ENSMUSG00000015882 ENSMUST00000186633 Lcorl protein_coding Interval_44697 chr13 47245006 47245472 + 0 NA exon (ENSMUSG00000038068.15, exon 8 of 8) protein_coding-exon (ENSMUSG00000038068.15, exon 8 of 8) 51414 ENSMUSG00000038068.15 ENSMUSG00000038068 ENSMUST00000110111 Rnf144b protein_coding Interval_55241 chr14 79582983 79584269 + 0 NA Intergenic Intergenic -4183 ENSMUSG00000022024.10 ENSMUSG00000022024 ENSMUST00000226320 Sugt1 protein_coding Interval_163554 chr9 22070493 22071689 + 0 NA promoter-TSS (ENSMUSG00000096981.2) antisense-promoter-TSS (ENSMUSG00000096981.2) 89 ENSMUSG00000096981.2 ENSMUSG00000096981 ENSMUST00000180419 Gm16845 antisense Interval_37145 chr12 58955689 58956436 + 0 NA intron (ENSMUSG00000097443.2, intron 1 of 1) antisense-intron (ENSMUSG00000097443.2, intron 1 of 1) 2973 ENSMUSG00000097443.2 ENSMUSG00000097443 ENSMUST00000180738 Gm17529 antisense Interval_63600 chr15 102270195 102272150 + 0 NA exon (ENSMUSG00000097050.1, exon 1 of 2) protein_coding-exon (ENSMUSG00000097050.1, exon 1 of 2) 609 ENSMUSG00000097050.1 ENSMUSG00000097050 ENSMUST00000181801 Gm9918 protein_coding Interval_97483 chr2 137153226 137153610 + 0 NA Intergenic Intergenic -45565 ENSMUSG00000099683.1 ENSMUSG00000099683 ENSMUST00000185663 Gm28214 lincRNA Interval_46734 chr13 69710802 69711008 + 0 NA intron (ENSMUSG00000052981.6, intron 1 of 1) protein_coding-intron (ENSMUSG00000052981.6, intron 1 of 1) 13094 ENSMUSG00000113324.1 ENSMUSG00000113324 ENSMUST00000220876 Gm48819 lincRNA Interval_154534 chr8 19059778 19060522 + 0 NA intron (ENSMUSG00000061847.2, intron 1 of 1) protein_coding-intron (ENSMUSG00000061847.2, intron 1 of 1) 4660 ENSMUSG00000061847.2 ENSMUSG00000061847 ENSMUST00000075504 Defb39 protein_coding Interval_132663 chr5 147022069 147022320 + 0 NA intron (ENSMUSG00000016520.7, intron 8 of 9) protein_coding-intron (ENSMUSG00000016520.7, intron 8 of 9) -3159 ENSMUSG00000016520.7 ENSMUSG00000016520 ENSMUST00000123092 Lnx2 protein_coding Interval_30348 chr11 93779247 93779470 + 0 NA Intergenic Intergenic 84276 ENSMUSG00000080872.1 ENSMUSG00000080872 ENSMUST00000122414 Gm11506 processed_pseudogene Interval_163550 chr9 22035240 22036903 + 0 NA TTS (ENSMUSG00000111842.1) protein_coding-TTS (ENSMUSG00000111842.1) 15952 ENSMUSG00000003410.8 ENSMUSG00000003410 ENSMUST00000215901 Elavl3 protein_coding Interval_25764 chr11 51594192 51596388 + 0 NA exon (ENSMUSG00000020359.13, exon 7 of 7) protein_coding-exon (ENSMUSG00000020359.13, exon 7 of 7) -3977 ENSMUSG00000020359.13 ENSMUSG00000020359 ENSMUST00000169995 Phykpl protein_coding Interval_161971 chr8 124181620 124182421 + 0 NA intron (ENSMUSG00000092329.1, intron 1 of 15) protein_coding-intron (ENSMUSG00000092329.1, intron 1 of 15) 21947 ENSMUSG00000110482.1 ENSMUSG00000110482 ENSMUST00000212467 Gm3889 processed_pseudogene Interval_16084 chr10 60622953 60623358 + 0 NA intron (ENSMUSG00000012819.15, intron 4 of 7) protein_coding-intron (ENSMUSG00000012819.15, intron 2 of 66) 129628 ENSMUSG00000020100.15 ENSMUSG00000020100 ENSMUST00000144989 Slc29a3 protein_coding Interval_126937 chr5 97567549 97567978 + 0 NA intron (ENSMUSG00000097516.7, intron 4 of 4) lincRNA-intron (ENSMUSG00000097516.7, intron 2 of 3) -110742 ENSMUSG00000050553.3 ENSMUSG00000050553 ENSMUST00000059657 Gk2 protein_coding Interval_151443 chr7 122493966 122494559 + 0 NA intron (ENSMUSG00000052889.11, intron 5 of 17) protein_coding-intron (ENSMUSG00000052889.11, intron 5 of 16) -9842 ENSMUSG00000087520.2 ENSMUSG00000087520 ENSMUST00000140453 Gm14389 processed_pseudogene Interval_81084 chr18 53729476 53729699 + 0 NA intron (ENSMUSG00000048799.8, intron 6 of 14) protein_coding-intron (ENSMUSG00000048799.8, intron 6 of 20) 14976 ENSMUSG00000048799.8 ENSMUSG00000048799 ENSMUST00000235928 Cep120 protein_coding Interval_56679 chr14 121337765 121338112 + 0 NA intron (ENSMUSG00000063410.8, intron 1 of 1) protein_coding-intron (ENSMUSG00000063410.8, intron 1 of 10) 42073 ENSMUSG00000063410.8 ENSMUSG00000063410 ENSMUST00000226158 Stk24 protein_coding Interval_154582 chr8 21092926 21093367 + 0 NA Intergenic Intergenic 1780 ENSMUSG00000085898.1 ENSMUSG00000085898 ENSMUST00000130905 Gm6689 processed_pseudogene Interval_156020 chr8 42500211 42500398 + 0 NA Intergenic Intergenic 21899 ENSMUSG00000077755.1 ENSMUSG00000077755 ENSMUST00000104567 Gm23531 snoRNA Interval_24011 chr11 29438461 29438908 + 0 NA intron (ENSMUSG00000032740.17, intron 7 of 30) protein_coding-intron (ENSMUSG00000032740.17, intron 7 of 31) 64336 ENSMUSG00000032740.17 ENSMUSG00000032740 ENSMUST00000144450 Ccdc88a protein_coding Interval_43934 chr13 38145167 38145723 + 0 NA Intergenic Intergenic 6347 ENSMUSG00000103789.1 ENSMUSG00000103789 ENSMUST00000191991 Gm10129 TEC Interval_152453 chr7 133088857 133089360 + 0 NA intron (ENSMUSG00000030970.16, intron 1 of 6) protein_coding-intron (ENSMUSG00000030970.16, intron 1 of 10) 31163 ENSMUSG00000110282.1 ENSMUSG00000110282 ENSMUST00000209529 B930086L07Rik TEC Interval_156192 chr8 45839979 45840307 + 0 NA Intergenic Intergenic -20846 ENSMUSG00000085440.1 ENSMUSG00000085440 ENSMUST00000135116 Sorbs2os antisense Interval_2744 chr1 44091821 44092002 + 0 NA intron (ENSMUSG00000026049.11, intron 1 of 3) protein_coding-intron (ENSMUSG00000026049.11, intron 4 of 7) 10527 ENSMUSG00000026049.11 ENSMUSG00000026049 ENSMUST00000125540 Tex30 protein_coding Interval_84207 chr19 8765612 8765828 + 0 NA promoter-TSS (ENSMUSG00000010097.15) protein_coding-promoter-TSS (ENSMUSG00000010097.15) -957 ENSMUSG00000010097.15 ENSMUSG00000010097 ENSMUST00000184808 Nxf1 protein_coding Interval_55766 chr14 99808180 99809374 + 0 NA Intergenic Intergenic -16004 ENSMUSG00000103188.1 ENSMUSG00000103188 ENSMUST00000192515 Gm37093 TEC Interval_77631 chr17 93380246 93380514 + 0 NA Intergenic Intergenic 11318 ENSMUSG00000117368.1 ENSMUSG00000117368 ENSMUST00000234726 Gm50001 processed_pseudogene Interval_86883 chr19 44613774 44614467 + 0 NA promoter-TSS (ENSMUSG00000117911.1) lincRNA-promoter-TSS (ENSMUSG00000117911.1) -642 ENSMUSG00000117911.1 ENSMUSG00000117911 ENSMUST00000236677 Gm35460 lincRNA Interval_9897 chr1 163940922 163941108 + 0 NA promoter-TSS (ENSMUSG00000026584.14) protein_coding-promoter-TSS (ENSMUSG00000026584.14) 11225 ENSMUSG00000026584.14 ENSMUSG00000026584 ENSMUST00000162920 Scyl3 protein_coding Interval_111354 chr4 19620254 19620596 + 0 NA intron (ENSMUSG00000041058.15, intron 22 of 24) protein_coding-intron (ENSMUSG00000041058.15, intron 20 of 22) 14974 ENSMUSG00000078772.2 ENSMUSG00000078772 ENSMUST00000108250 Gm12353 protein_coding Interval_114798 chr4 85337443 85337966 + 0 NA intron (ENSMUSG00000028488.15, intron 1 of 7) protein_coding-intron (ENSMUSG00000028488.15, intron 1 of 8) -38637 ENSMUSG00000028488.15 ENSMUSG00000028488 ENSMUST00000133109 Sh3gl2 protein_coding Interval_133794 chr6 12268645 12269108 + 0 NA Intergenic Intergenic 140250 ENSMUSG00000108209.1 ENSMUSG00000108209 ENSMUST00000203296 Gm32222 processed_pseudogene Interval_170835 chr9 111064027 111064260 + 0 NA Intergenic Intergenic -6624 ENSMUSG00000043953.12 ENSMUSG00000043953 ENSMUST00000195968 Ccrl2 protein_coding Interval_65896 chr16 30107888 30108078 + 0 NA Intergenic Intergenic -15101 ENSMUSG00000116997.1 ENSMUSG00000116997 ENSMUST00000232024 Gm20040 processed_pseudogene Interval_87149 chr19 46465402 46466296 + 0 NA intron (ENSMUSG00000025231.17, intron 1 of 2) protein_coding-intron (ENSMUSG00000025231.17, intron 8 of 11) -48811 ENSMUSG00000025034.9 ENSMUSG00000025034 ENSMUST00000235934 Trim8 protein_coding Interval_43195 chr13 25054949 25056575 + 0 NA promoter-TSS (ENSMUSG00000035910.15) protein_coding-promoter-TSS (ENSMUSG00000035910.15) 20703 ENSMUSG00000114228.1 ENSMUSG00000114228 ENSMUST00000224353 Gm47605 processed_pseudogene Interval_145222 chr7 30768365 30768740 + 0 NA intron (ENSMUSG00000060962.12, intron 8 of 18) protein_coding-intron (ENSMUSG00000060962.12, intron 9 of 19) 3495 ENSMUSG00000060962.12 ENSMUSG00000060962 ENSMUST00000041703 Dmkn protein_coding Interval_60904 chr15 77756615 77757892 + 0 NA promoter-TSS (ENSMUSG00000056656.6) protein_coding-promoter-TSS (ENSMUSG00000056656.6) -250 ENSMUSG00000056656.6 ENSMUSG00000056656 ENSMUST00000229332 Apol8 protein_coding Interval_88643 chr2 8407230 8407471 + 0 NA Intergenic Intergenic 65034 ENSMUSG00000088574.1 ENSMUSG00000088574 ENSMUST00000157949 Gm24534 misc_RNA Interval_104678 chr3 69354436 69355975 + 0 NA intron (ENSMUSG00000027784.10, intron 1 of 3) protein_coding-intron (ENSMUSG00000027784.10, intron 1 of 3) -19445 ENSMUSG00000090941.1 ENSMUSG00000090941 ENSMUST00000166666 Gm17212 processed_pseudogene Interval_166774 chr9 62534863 62537623 + 0 NA intron (ENSMUSG00000041729.15, intron 1 of 2) protein_coding-intron (ENSMUSG00000041729.15, intron 1 of 11) 21214 ENSMUSG00000084540.1 ENSMUSG00000084540 ENSMUST00000122591 n-R5s84 rRNA Interval_124995 chr5 63540729 63541372 + 0 NA Intergenic Intergenic 109844 ENSMUSG00000104868.1 ENSMUSG00000104868 ENSMUST00000067917 Gm9954 TEC Interval_134814 chr6 31784269 31784478 + 0 NA intron (ENSMUSG00000086804.8, intron 2 of 3) lincRNA-intron (ENSMUSG00000086804.8, intron 2 of 4) -2302 ENSMUSG00000087379.1 ENSMUSG00000087379 ENSMUST00000153328 Gm13849 lincRNA Interval_155749 chr8 36731906 36733563 + 0 NA exon (ENSMUSG00000031523.16, exon 1 of 14) protein_coding-exon (ENSMUSG00000031523.16, exon 1 of 14) 219702 ENSMUSG00000031523.16 ENSMUSG00000031523 ENSMUST00000179501 Dlc1 protein_coding Interval_6948 chr1 121249291 121249648 + 0 NA Intergenic Intergenic 25193 ENSMUSG00000101700.1 ENSMUSG00000101700 ENSMUST00000191007 Gm29359 lincRNA Interval_14886 chr10 40839797 40840647 + 0 NA TTS (ENSMUSG00000038446.8) protein_coding-TTS (ENSMUSG00000038446.8) 5715 ENSMUSG00000038446.8 ENSMUSG00000038446 ENSMUST00000215441 Cdc40 protein_coding Interval_172130 chrX 7814957 7815454 + 0 NA intron (ENSMUSG00000031153.16, intron 21 of 23) protein_coding-intron (ENSMUSG00000031153.16, intron 21 of 24) -7102 ENSMUSG00000009731.4 ENSMUSG00000009731 ENSMUST00000125440 Kcnd1 protein_coding Interval_3948 chr1 65012121 65013482 + 0 NA exon (ENSMUSG00000025955.13, exon 10 of 10) protein_coding-exon (ENSMUSG00000025955.13, exon 10 of 10) -11339 ENSMUSG00000077471.1 ENSMUSG00000077471 ENSMUST00000104283 Gm24788 snRNA Interval_158016 chr8 78063535 78064215 + 0 NA Intergenic Intergenic 19865 ENSMUSG00000110382.1 ENSMUSG00000110382 ENSMUST00000209933 Gm29895 lincRNA Interval_16275 chr10 61860249 61860600 + 0 NA intron (ENSMUSG00000058806.15, intron 4 of 13) protein_coding-intron (ENSMUSG00000058806.15, intron 28 of 33) -11213 ENSMUSG00000058806.15 ENSMUSG00000058806 ENSMUST00000153120 Col13a1 protein_coding Interval_46801 chr13 70731421 70732526 + 0 NA intron (ENSMUSG00000049538.14, intron 21 of 22) protein_coding-intron (ENSMUSG00000049538.14, intron 21 of 22) 25740 ENSMUSG00000113794.1 ENSMUSG00000113794 ENSMUST00000222750 Gm36607 antisense Interval_31335 chr11 100058881 100059437 + 0 NA intron (ENSMUSG00000087581.1, intron 1 of 2) antisense-intron (ENSMUSG00000087581.1, intron 1 of 2) 6873 ENSMUSG00000087581.1 ENSMUSG00000087581 ENSMUST00000136820 Gm11571 antisense Interval_79639 chr18 34167061 34168678 + 0 NA Intergenic Intergenic 21070 ENSMUSG00000096804.1 ENSMUSG00000096804 ENSMUST00000157988 Gm23411 snRNA Interval_45107 chr13 52255655 52255947 + 0 NA Intergenic Intergenic 75390 ENSMUSG00000113399.1 ENSMUSG00000113399 ENSMUST00000222876 Gm48199 lincRNA Interval_116619 chr4 116107933 116109036 + 0 NA intron (ENSMUSG00000028702.15, intron 9 of 18) protein_coding-intron (ENSMUSG00000028702.15, intron 8 of 17) 14498 ENSMUSG00000028702.15 ENSMUSG00000028702 ENSMUST00000143089 Rad54l protein_coding Interval_108524 chr3 127943796 127944053 + 0 NA intron (ENSMUSG00000104763.1, intron 3 of 4) lincRNA-intron (ENSMUSG00000104763.1, intron 3 of 4) -26785 ENSMUSG00000106437.1 ENSMUSG00000106437 ENSMUST00000199122 Gm35667 lincRNA Interval_107838 chr3 116029946 116030540 + 0 NA Intergenic Intergenic 22415 ENSMUSG00000027963.14 ENSMUSG00000027963 ENSMUST00000106502 Extl2 protein_coding Interval_786 chr1 11096294 11097869 + 0 NA intron (ENSMUSG00000048960.13, intron 6 of 39) protein_coding-intron (ENSMUSG00000048960.13, intron 6 of 39) 37157 ENSMUSG00000077318.1 ENSMUSG00000077318 ENSMUST00000104130 Gm24173 snoRNA Interval_84230 chr19 8909140 8910041 + 0 NA TTS (ENSMUSG00000071650.6) protein_coding-TTS (ENSMUSG00000071650.6) 1332 ENSMUSG00000071650.6 ENSMUSG00000071650 ENSMUST00000238063 Ganab protein_coding Interval_134722 chr6 30920398 30920608 + 0 NA intron (ENSMUSG00000085321.1, intron 2 of 2) lincRNA-intron (ENSMUSG00000085321.1, intron 2 of 2) -17044 ENSMUSG00000039032.2 ENSMUSG00000039032 ENSMUST00000201230 Tsga13 protein_coding Interval_81490 chr18 61118766 61119191 + 0 NA exon (ENSMUSG00000024621.16, exon 11 of 22) protein_coding-exon (ENSMUSG00000024621.16, exon 11 of 22) 1510 ENSMUSG00000098389.1 ENSMUSG00000098389 ENSMUST00000183458 Mir6983 miRNA Interval_14513 chr10 34615670 34615881 + 0 NA Intergenic Intergenic 132243 ENSMUSG00000019779.15 ENSMUSG00000019779 ENSMUST00000215594 Frk protein_coding Interval_39081 chr12 84909495 84909896 + 0 NA Intergenic Intergenic -8453 ENSMUSG00000092006.1 ENSMUSG00000092006 ENSMUST00000163802 Gm17139 antisense Interval_75310 chr17 65817710 65818278 + 0 NA intron (ENSMUSG00000061950.17, intron 1 of 3) protein_coding-intron (ENSMUSG00000061950.17, intron 10 of 19) -10954 ENSMUSG00000061950.17 ENSMUSG00000061950 ENSMUST00000162703 Ppp4r1 protein_coding Interval_161708 chr8 122209764 122210565 + 0 NA intron (ENSMUSG00000092329.1, intron 1 of 15) protein_coding-intron (ENSMUSG00000092329.1, intron 1 of 15) -48456 ENSMUSG00000043903.4 ENSMUSG00000043903 ENSMUST00000055537 Zfp469 protein_coding Interval_145163 chr7 30394680 30396068 + 0 NA Intergenic Intergenic -18478 ENSMUSG00000030579.10 ENSMUSG00000030579 ENSMUST00000208125 Tyrobp protein_coding Interval_166562 chr9 60908741 60909532 + 0 NA Intergenic Intergenic -10087 ENSMUSG00000111444.1 ENSMUSG00000111444 ENSMUST00000216374 Gm47923 lincRNA Interval_68867 chr16 87698370 87700315 + 0 NA intron (ENSMUSG00000025612.5, intron 1 of 2) protein_coding-intron (ENSMUSG00000025612.5, intron 1 of 4) 338 ENSMUSG00000025612.5 ENSMUSG00000025612 ENSMUST00000156958 Bach1 protein_coding Interval_39928 chr12 99842741 99842968 + 0 NA intron (ENSMUSG00000113147.1, intron 3 of 3) protein_coding-intron (ENSMUSG00000021176.6, intron 5 of 5) -10635 ENSMUSG00000113540.1 ENSMUSG00000113540 ENSMUST00000222111 Gm47206 TEC Interval_132358 chr5 144446107 144447400 + 0 NA TTS (ENSMUSG00000047843.16) protein_coding-TTS (ENSMUSG00000047843.16) 40151 ENSMUSG00000083574.1 ENSMUSG00000083574 ENSMUST00000118354 Gm15709 processed_pseudogene Interval_31033 chr11 97807944 97809241 + 0 NA intron (ENSMUSG00000038366.15, intron 1 of 1) protein_coding-intron (ENSMUSG00000038366.15, intron 2 of 6) -6656 ENSMUSG00000038366.15 ENSMUSG00000038366 ENSMUST00000107568 Lasp1 protein_coding Interval_149693 chr7 100693313 100693719 + 0 NA Intergenic Intergenic 18428 ENSMUSG00000108866.1 ENSMUSG00000108866 ENSMUST00000208164 Gm35082 lincRNA Interval_2481 chr1 39670693 39671730 + 0 NA intron (ENSMUSG00000057173.8, intron 13 of 14) protein_coding-intron (ENSMUSG00000057173.8, intron 13 of 14) -19737 ENSMUSG00000050967.5 ENSMUSG00000050967 ENSMUST00000053355 Creg2 protein_coding Interval_103491 chr3 44604245 44604948 + 0 NA Intergenic Intergenic -55306 ENSMUSG00000104051.1 ENSMUSG00000104051 ENSMUST00000192085 Gm38128 TEC Interval_5980 chr1 93703538 93703891 + 0 NA exon (ENSMUSG00000026279.14, exon 6 of 6) protein_coding-exon (ENSMUSG00000026279.14, exon 6 of 6) 18012 ENSMUSG00000026278.14 ENSMUSG00000026278 ENSMUST00000185685 Bok protein_coding Interval_45717 chr13 57250292 57250736 + 0 NA Intergenic Intergenic 10667 ENSMUSG00000114363.1 ENSMUSG00000114363 ENSMUST00000225562 Gm48174 processed_pseudogene Interval_79505 chr18 32462329 32462836 + 0 NA promoter-TSS (ENSMUSG00000109232.1) bidirectional_promoter_lncRNA-promoter-TSS (ENSMUSG00000109232.1) 3 ENSMUSG00000109232.1 ENSMUSG00000109232 ENSMUST00000207413 Gm44577 bidirectional_promoter_lncRNA Interval_94026 chr2 80907171 80907484 + 0 NA Intergenic Intergenic 2028 ENSMUSG00000081566.1 ENSMUSG00000081566 ENSMUST00000117618 Gm13756 processed_pseudogene Interval_143948 chr7 18395053 18395225 + 0 NA Intergenic Intergenic 5726 ENSMUSG00000109209.1 ENSMUSG00000109209 ENSMUST00000208748 Gm45104 TEC Interval_85561 chr19 28560333 28561437 + 0 NA intron (ENSMUSG00000052942.13, intron 2 of 10) protein_coding-intron (ENSMUSG00000052942.13, intron 2 of 9) 22409 ENSMUSG00000089952.1 ENSMUSG00000089952 ENSMUST00000162380 4933413C19Rik sense_intronic Interval_51751 chr14 31953017 31953279 + 0 NA Intergenic Intergenic 46620 ENSMUSG00000046005.4 ENSMUSG00000046005 ENSMUST00000143315 D830044D21Rik lincRNA Interval_131040 chr5 134718457 134719610 + 0 NA exon (ENSMUSG00000029675.12, exon 18 of 37) protein_coding-exon (ENSMUSG00000029675.12, exon 18 of 37) 10073 ENSMUSG00000029675.12 ENSMUSG00000029675 ENSMUST00000201399 Eln protein_coding Interval_54022 chr14 64579960 64581334 + 0 NA Intergenic Intergenic -9048 ENSMUSG00000097545.7 ENSMUSG00000097545 ENSMUST00000186703 Mir124a-1hg lincRNA Interval_145281 chr7 31126010 31127665 + 0 NA promoter-TSS (ENSMUSG00000019194.15) protein_coding-promoter-TSS (ENSMUSG00000019194.15) 7 ENSMUSG00000019194.15 ENSMUSG00000019194 ENSMUST00000211923 Scn1b protein_coding Interval_68689 chr16 84759413 84760032 + 0 NA Intergenic Intergenic 22372 ENSMUSG00000088058.1 ENSMUSG00000088058 ENSMUST00000157433 Gm26153 snoRNA Interval_13016 chr10 9323380 9323603 + 0 NA Intergenic Intergenic 13127 ENSMUSG00000112019.1 ENSMUSG00000112019 ENSMUST00000220435 Gm48748 lincRNA Interval_82006 chr18 67105500 67105772 + 0 NA intron (ENSMUSG00000024524.17, intron 1 of 5) protein_coding-intron (ENSMUSG00000024524.17, intron 1 of 11) -17096 ENSMUSG00000117982.1 ENSMUSG00000117982 ENSMUST00000236854 Gm50170 TEC Interval_66259 chr16 32691422 32692105 + 0 NA Intergenic Intergenic 13832 ENSMUSG00000022791.19 ENSMUSG00000022791 ENSMUST00000232650 Tnk2 protein_coding Interval_4666 chr1 75847611 75847911 + 0 NA Intergenic Intergenic 170995 ENSMUSG00000099996.1 ENSMUSG00000099996 ENSMUST00000188786 Gm29065 lincRNA Interval_75154 chr17 64075940 64077674 + 0 NA intron (ENSMUSG00000000127.15, intron 14 of 17) protein_coding-intron (ENSMUSG00000000127.15, intron 14 of 17) -213016 ENSMUSG00000045506.3 ENSMUSG00000045506 ENSMUST00000050753 A930002H24Rik protein_coding Interval_92964 chr2 69003932 69004677 + 0 NA intron (ENSMUSG00000027035.10, intron 4 of 10) protein_coding-intron (ENSMUSG00000027035.10, intron 4 of 9) -9308 ENSMUSG00000103546.1 ENSMUSG00000103546 ENSMUST00000194110 Gm37666 TEC Interval_1724 chr1 32702242 32702592 + 0 NA Intergenic Intergenic -7762 ENSMUSG00000104433.1 ENSMUSG00000104433 ENSMUST00000195241 Gm37426 TEC Interval_79377 chr18 31435493 31435790 + 0 NA Intergenic Intergenic -4677 ENSMUSG00000096934.1 ENSMUSG00000096934 ENSMUST00000181067 Gm26658 antisense Interval_976 chr1 13599431 13600287 + 0 NA Intergenic Intergenic -9984 ENSMUSG00000025935.10 ENSMUSG00000025935 ENSMUST00000188377 Tram1 protein_coding Interval_14519 chr10 34704320 34704562 + 0 NA Intergenic Intergenic -176967 ENSMUSG00000111042.1 ENSMUSG00000111042 ENSMUST00000215855 Gm18252 transcribed_processed_pseudogene Interval_9526 chr1 158536733 158537021 + 0 NA exon (ENSMUSG00000102508.1, exon 1 of 1) TEC-exon (ENSMUSG00000102508.1, exon 1 of 1) 2070 ENSMUSG00000102508.1 ENSMUSG00000102508 ENSMUST00000191771 Gm37367 TEC Interval_136210 chr6 52054290 52054567 + 0 NA Intergenic Intergenic 41827 ENSMUSG00000108244.1 ENSMUSG00000108244 ENSMUST00000203453 Gm44077 lincRNA Interval_170529 chr9 108540013 108540442 + 0 NA intron (ENSMUSG00000006673.14, intron 3 of 5) protein_coding-intron (ENSMUSG00000006673.14, intron 4 of 10) -3987 ENSMUSG00000103970.1 ENSMUSG00000103970 ENSMUST00000192908 Gm37678 TEC Interval_66990 chr16 39064032 39064669 + 0 NA Intergenic Intergenic 124556 ENSMUSG00000116965.1 ENSMUSG00000116965 ENSMUST00000231748 Gm36742 lincRNA Interval_106228 chr3 94794208 94794601 + 0 NA Intergenic Intergenic -7889 ENSMUSG00000068876.16 ENSMUSG00000068876 ENSMUST00000155485 Cgn protein_coding Interval_76334 chr17 79179922 79180181 + 0 NA Intergenic Intergenic -76307 ENSMUSG00000117054.1 ENSMUSG00000117054 ENSMUST00000232888 Gm49869 processed_pseudogene Interval_62476 chr15 93324011 93324317 + 0 NA intron (ENSMUSG00000022634.9, intron 2 of 4) protein_coding-intron (ENSMUSG00000022634.9, intron 2 of 3) 12771 ENSMUSG00000022634.9 ENSMUSG00000022634 ENSMUST00000133736 Yaf2 protein_coding Interval_122126 chr5 17636213 17636501 + 0 NA intron (ENSMUSG00000028780.13, intron 2 of 7) protein_coding-intron (ENSMUSG00000028780.13, intron 2 of 17) 61591 ENSMUSG00000028780.13 ENSMUSG00000028780 ENSMUST00000115271 Sema3c protein_coding Interval_76716 chr17 83664271 83665317 + 0 NA Intergenic Intergenic -32899 ENSMUSG00000045053.2 ENSMUSG00000045053 ENSMUST00000051482 Kcng3 protein_coding Interval_111212 chr4 14898307 14899066 + 0 NA intron (ENSMUSG00000028221.3, intron 4 of 6) protein_coding-intron (ENSMUSG00000028221.3, intron 4 of 6) -31990 ENSMUSG00000086587.7 ENSMUSG00000086587 ENSMUST00000152024 Gm11837 antisense Interval_53029 chr14 53650817 53651549 + 0 NA Intergenic Intergenic 1779 ENSMUSG00000076848.3 ENSMUSG00000076848 ENSMUST00000103660 Trav15-2-dv6-2 TR_V_gene Interval_48106 chr13 96130940 96133865 + 0 NA promoter-TSS (ENSMUSG00000100475.1) lincRNA-promoter-TSS (ENSMUSG00000100475.1) -967 ENSMUSG00000100475.1 ENSMUSG00000100475 ENSMUST00000188138 Gm29543 lincRNA Interval_117987 chr4 127474843 127475156 + 0 NA promoter-TSS (ENSMUSG00000087470.2) lincRNA-promoter-TSS (ENSMUSG00000087470.2) 97 ENSMUSG00000087470.2 ENSMUSG00000087470 ENSMUST00000146587 A630031M04Rik lincRNA Interval_12945 chr10 8539156 8539391 + 0 NA Intergenic Intergenic -103661 ENSMUSG00000077582.1 ENSMUSG00000077582 ENSMUST00000104394 Gm24374 snRNA Interval_103663 chr3 51453830 51454247 + 0 NA intron (ENSMUSG00000063273.11, intron 10 of 19) protein_coding-intron (ENSMUSG00000063273.11, intron 10 of 19) 13121 ENSMUSG00000063273.11 ENSMUSG00000063273 ENSMUST00000193267 Naa15 protein_coding Interval_21062 chr10 125784647 125785036 + 0 NA Intergenic Intergenic -181393 ENSMUSG00000020105.9 ENSMUSG00000020105 ENSMUST00000219974 Lrig3 protein_coding Interval_129996 chr5 123609979 123610282 + 0 NA intron (ENSMUSG00000049550.17, intron 4 of 11) protein_coding-intron (ENSMUSG00000049550.17, intron 17 of 24) -18071 ENSMUSG00000084552.1 ENSMUSG00000084552 ENSMUST00000122603 Gm24840 snRNA Interval_70385 chr17 9636532 9637351 + 0 NA Intergenic Intergenic 32776 ENSMUSG00000046173.3 ENSMUSG00000046173 ENSMUST00000057190 Pabpc6 protein_coding Interval_68384 chr16 75330722 75331203 + 0 NA Intergenic Intergenic 68312 ENSMUSG00000116867.1 ENSMUSG00000116867 ENSMUST00000232003 Gm49677 TEC Interval_59265 chr15 50363908 50364884 + 0 NA Intergenic Intergenic 77498 ENSMUSG00000115478.1 ENSMUSG00000115478 ENSMUST00000227182 Gm49198 lincRNA Interval_119560 chr4 138373348 138373641 + 0 NA Intergenic Intergenic -21704 ENSMUSG00000046109.6 ENSMUSG00000046109 ENSMUST00000062902 AB041806 antisense Interval_90438 chr2 30450022 30451176 + 0 NA Intergenic Intergenic 23620 ENSMUSG00000089762.3 ENSMUSG00000089762 ENSMUST00000065134 Ier5l protein_coding Interval_91513 chr2 40300476 40300643 + 0 NA Intergenic Intergenic 2042 ENSMUSG00000088512.1 ENSMUSG00000088512 ENSMUST00000157887 Gm24467 snoRNA Interval_144712 chr7 27673828 27675651 + 0 NA promoter-TSS (ENSMUSG00000040390.13) protein_coding-promoter-TSS (ENSMUSG00000040390.13) 3105 ENSMUSG00000108520.1 ENSMUSG00000108520 ENSMUST00000205388 Gm44684 processed_transcript Interval_108819 chr3 131951683 131952125 + 0 NA intron (ENSMUSG00000105331.1, intron 1 of 3) lincRNA-intron (ENSMUSG00000105331.1, intron 1 of 3) 33645 ENSMUSG00000087877.1 ENSMUSG00000087877 ENSMUST00000157252 Gm26103 snRNA Interval_71701 chr17 25546939 25547938 + 0 NA Intergenic Intergenic 2051 ENSMUSG00000117544.1 ENSMUSG00000117544 ENSMUST00000234730 Rpsa-ps6 processed_pseudogene Interval_10588 chr1 172046851 172047466 + 0 NA Intergenic Intergenic 10415 ENSMUSG00000051251.3 ENSMUSG00000051251 ENSMUST00000059794 Nhlh1 protein_coding Interval_127739 chr5 107234089 107234303 + 0 NA intron (ENSMUSG00000029287.14, intron 2 of 6) protein_coding-intron (ENSMUSG00000029287.14, intron 2 of 16) -7427 ENSMUSG00000084218.1 ENSMUSG00000084218 ENSMUST00000118220 Gm8145 processed_pseudogene Interval_66696 chr16 36313572 36314495 + 0 NA Intergenic Intergenic -1137 ENSMUSG00000094972.1 ENSMUSG00000094972 ENSMUST00000157239 Gm25254 snRNA Interval_10377 chr1 170134728 170135063 + 0 NA Intergenic Intergenic -24133 ENSMUSG00000026674.9 ENSMUSG00000026674 ENSMUST00000194619 Ddr2 protein_coding Interval_142986 chr6 148054441 148055299 + 0 NA intron (ENSMUSG00000030303.15, intron 1 of 12) protein_coding-intron (ENSMUSG00000030303.15, intron 1 of 11) 7455 ENSMUSG00000030303.15 ENSMUSG00000030303 ENSMUST00000111607 Far2 protein_coding Interval_121071 chr4 152571260 152571758 + 0 NA Intergenic Intergenic 93331 ENSMUSG00000039577.17 ENSMUSG00000039577 ENSMUST00000123635 Nphp4 protein_coding Interval_165282 chr9 46008866 46009526 + 0 NA intron (ENSMUSG00000003131.7, intron 1 of 3) protein_coding-intron (ENSMUSG00000003131.7, intron 1 of 3) -24413 ENSMUSG00000003131.7 ENSMUSG00000003131 ENSMUST00000214996 Pafah1b2 protein_coding Interval_18632 chr10 88705433 88706340 + 0 NA TTS (ENSMUSG00000111919.1) processed_pseudogene-TTS (ENSMUSG00000111919.1) 1291 ENSMUSG00000111919.1 ENSMUSG00000111919 ENSMUST00000217894 Gm46192 processed_pseudogene Interval_43846 chr13 37542837 37543327 + 0 NA exon (ENSMUSG00000114665.1, exon 2 of 3) lincRNA-exon (ENSMUSG00000114665.1, exon 2 of 3) -4696 ENSMUSG00000114665.1 ENSMUSG00000114665 ENSMUST00000225390 Lncbate6 lincRNA Interval_98659 chr2 153935103 153935874 + 0 NA Intergenic Intergenic -2733 ENSMUSG00000074665.11 ENSMUSG00000074665 ENSMUST00000099181 Bpifb4 protein_coding Interval_70845 chr17 15309983 15311481 + 0 NA Intergenic Intergenic 11150 ENSMUSG00000116647.1 ENSMUSG00000116647 ENSMUST00000232519 Gm7423 processed_pseudogene Interval_88910 chr2 12557140 12558614 + 0 NA Intergenic Intergenic -135851 ENSMUSG00000083547.2 ENSMUSG00000083547 ENSMUST00000117101 Gm13321 processed_pseudogene Interval_10285 chr1 167969767 167970280 + 0 NA Intergenic Intergenic -34116 ENSMUSG00000093538.2 ENSMUSG00000093538 ENSMUST00000177351 Gm20711 antisense Interval_36483 chr12 45669404 45669617 + 0 NA TTS (ENSMUSG00000112604.1) TEC-TTS (ENSMUSG00000112604.1) 2283 ENSMUSG00000112604.1 ENSMUSG00000112604 ENSMUST00000217744 Gm48518 TEC Interval_110958 chr4 10859739 10861115 + 0 NA Intergenic Intergenic 6584 ENSMUSG00000083220.1 ENSMUSG00000083220 ENSMUST00000119855 Gm12919 processed_pseudogene Interval_12137 chr1 190006551 190007792 + 0 NA Intergenic Intergenic -84918 ENSMUSG00000026603.13 ENSMUSG00000026603 ENSMUST00000144452 Smyd2 protein_coding Interval_130250 chr5 125203357 125205095 + 0 NA Intergenic Intergenic 68589 ENSMUSG00000105039.1 ENSMUSG00000105039 ENSMUST00000198586 Gm32585 lincRNA Interval_9594 chr1 160043709 160045146 + 0 NA promoter-TSS (ENSMUSG00000090394.8) protein_coding-promoter-TSS (ENSMUSG00000090394.8) 45 ENSMUSG00000090394.8 ENSMUSG00000090394 ENSMUST00000097513 4930523C07Rik protein_coding Interval_70714 chr17 13795015 13795324 + 0 NA intron (ENSMUSG00000068036.16, intron 1 of 18) protein_coding-intron (ENSMUSG00000068036.16, intron 1 of 18) -33791 ENSMUSG00000117063.1 ENSMUSG00000117063 ENSMUST00000135850 Gm49936 lincRNA Interval_174769 chrX 166359710 166360859 + 0 NA intron (ENSMUSG00000031342.17, intron 2 of 7) protein_coding-intron (ENSMUSG00000031342.17, intron 1 of 6) 15592 ENSMUSG00000031342.17 ENSMUSG00000031342 ENSMUST00000129731 Gpm6b protein_coding Interval_104488 chr3 66616333 66616572 + 0 NA Intergenic Intergenic -52901 ENSMUSG00000103600.1 ENSMUSG00000103600 ENSMUST00000193914 Gm17952 processed_pseudogene Interval_153108 chr7 141407458 141409333 + 0 NA exon (ENSMUSG00000051007.15, exon 8 of 8) protein_coding-exon (ENSMUSG00000051007.15, exon 8 of 8) 1523 ENSMUSG00000051007.15 ENSMUSG00000051007 ENSMUST00000142852 Gatd1 protein_coding Interval_164939 chr9 43256530 43257814 + 0 NA intron (ENSMUSG00000095385.3, intron 4 of 7) lincRNA-intron (ENSMUSG00000095385.3, intron 4 of 7) -8107 ENSMUSG00000095385.3 ENSMUSG00000095385 ENSMUST00000210037 D630033O11Rik lincRNA Interval_26076 chr11 53957947 53959265 + 0 NA intron (ENSMUSG00000063652.10, intron 3 of 3) protein_coding-intron (ENSMUSG00000063652.10, intron 4 of 9) 8899 ENSMUSG00000080768.1 ENSMUSG00000080768 ENSMUST00000119198 Gm12219 processed_pseudogene Interval_155642 chr8 35498411 35499025 + 0 NA Intergenic Intergenic -17310 ENSMUSG00000031527.7 ENSMUSG00000031527 ENSMUST00000210483 Eri1 protein_coding Interval_48388 chr13 98678696 98680136 + 0 NA Intergenic Intergenic 15352 ENSMUSG00000052485.7 ENSMUSG00000052485 ENSMUST00000148950 Tmem171 protein_coding Interval_52435 chr14 46385889 46386367 + 0 NA TTS (ENSMUSG00000021835.15) protein_coding-TTS (ENSMUSG00000021835.15) 1176 ENSMUSG00000021835.15 ENSMUSG00000021835 ENSMUST00000135408 Bmp4 protein_coding Interval_166835 chr9 63108654 63109925 + 0 NA Intergenic Intergenic -7912 ENSMUSG00000111297.1 ENSMUSG00000111297 ENSMUST00000215204 Gm6082 processed_pseudogene Interval_150382 chr7 110047278 110047534 + 0 NA TTS (ENSMUSG00000064451.1) snoRNA-TTS (ENSMUSG00000064451.1) 1042 ENSMUSG00000064451.1 ENSMUSG00000064451 ENSMUST00000082517 Snora23 snoRNA Interval_67713 chr16 56176051 56176927 + 0 NA intron (ENSMUSG00000052917.15, intron 17 of 23) protein_coding-intron (ENSMUSG00000052917.15, intron 16 of 22) -26927 ENSMUSG00000116826.1 ENSMUSG00000116826 ENSMUST00000231653 Gm49682 processed_pseudogene Interval_47389 chr13 83016555 83017174 + 0 NA Intergenic Intergenic -48593 ENSMUSG00000114372.1 ENSMUSG00000114372 ENSMUST00000225970 2310067P03Rik lincRNA Interval_150600 chr7 112733047 112734061 + 0 NA intron (ENSMUSG00000055320.18, intron 2 of 2) protein_coding-intron (ENSMUSG00000055320.18, intron 1 of 13) 19603 ENSMUSG00000106046.1 ENSMUSG00000106046 ENSMUST00000199696 Gm44462 miRNA Interval_133910 chr6 15007987 15008391 + 0 NA intron (ENSMUSG00000029563.16, intron 2 of 3) protein_coding-intron (ENSMUSG00000029563.16, intron 2 of 18) 106738 ENSMUSG00000029563.16 ENSMUSG00000029563 ENSMUST00000115475 Foxp2 protein_coding Interval_50282 chr14 11624056 11624760 + 0 NA intron (ENSMUSG00000021745.14, intron 1 of 3) protein_coding-intron (ENSMUSG00000021745.14, intron 1 of 29) -103638 ENSMUSG00000114849.1 ENSMUSG00000114849 ENSMUST00000224543 Gm48595 lincRNA Interval_123636 chr5 34130910 34131138 + 0 NA intron (ENSMUSG00000045102.12, intron 4 of 24) protein_coding-intron (ENSMUSG00000045102.12, intron 3 of 24) 12284 ENSMUSG00000106902.1 ENSMUSG00000106902 ENSMUST00000202325 4930557J02Rik antisense Interval_42081 chr13 8189325 8190128 + 0 NA Intergenic Intergenic 10768 ENSMUSG00000114126.1 ENSMUSG00000114126 ENSMUST00000221418 Gm48257 lincRNA Interval_113956 chr4 61811162 61812247 + 0 NA Intergenic Intergenic 14222 ENSMUSG00000090090.1 ENSMUSG00000090090 ENSMUST00000120085 Mup-ps16 unprocessed_pseudogene Interval_8368 chr1 138267141 138267771 + 0 NA Intergenic Intergenic 5814 ENSMUSG00000102822.1 ENSMUSG00000102822 ENSMUST00000191817 1700113B19Rik TEC Interval_152566 chr7 134669923 134672014 + 0 NA promoter-TSS (ENSMUSG00000058325.6) protein_coding-promoter-TSS (ENSMUSG00000058325.6) 281 ENSMUSG00000058325.6 ENSMUSG00000058325 ENSMUST00000210121 Dock1 protein_coding Interval_45451 chr13 55234634 55234924 + 0 NA exon (ENSMUSG00000021488.8, exon 4 of 4) protein_coding-exon (ENSMUSG00000021488.8, exon 4 of 4) 19622 ENSMUSG00000114359.1 ENSMUSG00000114359 ENSMUST00000224833 Gm47816 processed_pseudogene Interval_139975 chr6 113145232 113145442 + 0 NA intron (ENSMUSG00000034269.12, intron 3 of 6) protein_coding-intron (ENSMUSG00000034269.12, intron 18 of 21) 34920 ENSMUSG00000034269.12 ENSMUSG00000034269 ENSMUST00000156048 Setd5 protein_coding Interval_1849 chr1 34121182 34122011 + 0 NA exon (ENSMUSG00000026131.20, exon 1 of 5) protein_coding-exon (ENSMUSG00000026131.20, exon 1 of 5) 4237 ENSMUSG00000105982.1 ENSMUSG00000105982 ENSMUST00000198033 Mir6896 miRNA Interval_134559 chr6 29545131 29546480 + 0 NA TTS (ENSMUSG00000106904.1) TEC-TTS (ENSMUSG00000106904.1) 2333 ENSMUSG00000106904.1 ENSMUSG00000106904 ENSMUST00000201829 Gm43029 TEC Interval_111091 chr4 11929419 11929947 + 0 NA TTS (ENSMUSG00000084518.1) misc_RNA-TTS (ENSMUSG00000084518.1) 1259 ENSMUSG00000084518.1 ENSMUSG00000084518 ENSMUST00000122569 Gm22477 misc_RNA Interval_102042 chr3 16051597 16052457 + 0 NA Intergenic Intergenic 26297 ENSMUSG00000103535.1 ENSMUSG00000103535 ENSMUST00000195875 Gm37836 processed_pseudogene Interval_16346 chr10 62371587 62371824 + 0 NA intron (ENSMUSG00000037012.18, intron 1 of 4) protein_coding-intron (ENSMUSG00000037012.18, intron 1 of 21) 31098 ENSMUSG00000085347.1 ENSMUSG00000085347 ENSMUST00000142968 Hk1os antisense Interval_25387 chr11 47162890 47163690 + 0 NA intron (ENSMUSG00000020354.15, intron 3 of 6) protein_coding-intron (ENSMUSG00000020354.15, intron 3 of 7) 288877 ENSMUSG00000082818.1 ENSMUSG00000082818 ENSMUST00000122081 Gm12175 processed_pseudogene Interval_159709 chr8 98625621 98627192 + 0 NA Intergenic Intergenic 48796 ENSMUSG00000080480.1 ENSMUSG00000080480 ENSMUST00000116830 Gm23494 snRNA Interval_100501 chr2 169702335 169703198 + 0 NA intron (ENSMUSG00000047907.11, intron 1 of 2) protein_coding-intron (ENSMUSG00000047907.11, intron 1 of 1) -74448 ENSMUSG00000103662.1 ENSMUSG00000103662 ENSMUST00000191912 Gm34294 TEC Interval_125843 chr5 74943858 74944628 + 0 NA Intergenic Intergenic -4947 ENSMUSG00000072874.4 ENSMUSG00000072874 ENSMUST00000101121 Gm6116 lincRNA Interval_98032 chr2 146944899 146945388 + 0 NA intron (ENSMUSG00000074749.10, intron 9 of 13) protein_coding-intron (ENSMUSG00000074749.10, intron 9 of 13) -84409 ENSMUSG00000027433.5 ENSMUSG00000027433 ENSMUST00000137358 Xrn2 protein_coding Interval_132453 chr5 145040737 145040944 + 0 NA intron (ENSMUSG00000038770.17, intron 4 of 7) protein_coding-intron (ENSMUSG00000038770.17, intron 4 of 7) -2150 ENSMUSG00000029620.4 ENSMUSG00000029620 ENSMUST00000031624 1700018F24Rik protein_coding Interval_18069 chr10 82075995 82076196 + 0 NA Intergenic Intergenic -7258 ENSMUSG00000112160.1 ENSMUSG00000112160 ENSMUST00000220287 BC024063 protein_coding Interval_134238 chr6 23425716 23425936 + 0 NA intron (ENSMUSG00000017978.18, intron 11 of 28) protein_coding-intron (ENSMUSG00000017978.18, intron 11 of 29) -93920 ENSMUSG00000098877.1 ENSMUSG00000098877 ENSMUST00000185172 Gm27959 rRNA Interval_169231 chr9 95672860 95673472 + 0 NA intron (ENSMUSG00000015354.8, intron 3 of 8) protein_coding-intron (ENSMUSG00000015354.8, intron 3 of 8) 2851 ENSMUSG00000100825.1 ENSMUSG00000100825 ENSMUST00000188629 Itpa-ps2 processed_pseudogene Interval_143366 chr7 6155075 6156572 + 0 NA promoter-TSS (ENSMUSG00000046792.8) protein_coding-promoter-TSS (ENSMUSG00000046792.8) -373 ENSMUSG00000108894.1 ENSMUSG00000108894 ENSMUST00000207700 Gm45841 TEC Interval_26571 chr11 58963416 58964010 + 0 NA promoter-TSS (ENSMUSG00000036964.14) protein_coding-promoter-TSS (ENSMUSG00000036964.14) -89 ENSMUSG00000036964.14 ENSMUSG00000036964 ENSMUST00000075141 Trim17 protein_coding Interval_4310 chr1 72624589 72624795 + 0 NA intron (ENSMUSG00000039354.16, intron 13 of 16) protein_coding-intron (ENSMUSG00000039354.16, intron 13 of 16) -16496 ENSMUSG00000110712.1 ENSMUSG00000110712 ENSMUST00000211909 Gm39662 antisense Interval_68216 chr16 68650414 68650666 + 0 NA Intergenic Intergenic 139605 ENSMUSG00000116859.1 ENSMUSG00000116859 ENSMUST00000231403 Gm49651 processed_pseudogene Interval_151401 chr7 122099143 122099598 + 0 NA TTS (ENSMUSG00000108573.1) TEC-TTS (ENSMUSG00000108573.1) 2336 ENSMUSG00000030869.11 ENSMUSG00000030869 ENSMUST00000146022 Ndufab1 protein_coding Interval_135962 chr6 49115703 49115988 + 0 NA intron (ENSMUSG00000029814.10, intron 6 of 9) protein_coding-intron (ENSMUSG00000029814.10, intron 6 of 14) -21634 ENSMUSG00000029814.10 ENSMUSG00000029814 ENSMUST00000203680 Igf2bp3 protein_coding Interval_69828 chr16 97242778 97243118 + 0 NA Intergenic Intergenic -162321 ENSMUSG00000116686.1 ENSMUSG00000116686 ENSMUST00000232315 Gm49681 processed_pseudogene Interval_6046 chr1 94895666 94895897 + 0 NA Intergenic Intergenic 98698 ENSMUSG00000100518.1 ENSMUSG00000100518 ENSMUST00000185490 4930440C22Rik lincRNA Interval_134907 chr6 33449493 33449915 + 0 NA intron (ENSMUSG00000029763.17, intron 9 of 12) protein_coding-intron (ENSMUSG00000029763.17, intron 9 of 17) 16696 ENSMUSG00000107358.1 ENSMUSG00000107358 ENSMUST00000201039 Gm43168 TEC Interval_72668 chr17 31450651 31451571 + 0 NA intron (ENSMUSG00000041119.12, intron 1 of 4) protein_coding-intron (ENSMUSG00000041119.12, intron 7 of 18) 10724 ENSMUSG00000118081.1 ENSMUSG00000118081 ENSMUST00000236844 Gm50138 antisense Interval_27246 chr11 64842833 64843419 + 0 NA intron (ENSMUSG00000086490.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000086490.1, intron 1 of 1) 627 ENSMUSG00000086490.1 ENSMUSG00000086490 ENSMUST00000122911 Gm12292 lincRNA Interval_133375 chr6 4190889 4191321 + 0 NA Intergenic Intergenic 63229 ENSMUSG00000108139.1 ENSMUSG00000108139 ENSMUST00000204376 Gm44055 processed_pseudogene Interval_83469 chr18 86283000 86283416 + 0 NA Intergenic Intergenic -39688 ENSMUSG00000118283.1 ENSMUSG00000118283 ENSMUST00000238105 Gm7623 processed_pseudogene Interval_167315 chr9 67260527 67261588 + 0 NA intron (ENSMUSG00000052698.15, intron 21 of 31) protein_coding-intron (ENSMUSG00000052698.15, intron 47 of 57) -24331 ENSMUSG00000076379.2 ENSMUSG00000076379 ENSMUST00000102424 Mir190a miRNA Interval_36058 chr12 34528348 34529363 + 0 NA promoter-TSS (ENSMUSG00000004698.11) protein_coding-promoter-TSS (ENSMUSG00000004698.11) -415 ENSMUSG00000004698.11 ENSMUSG00000004698 ENSMUST00000211632 Hdac9 protein_coding Interval_5214 chr1 86486967 86489529 + 0 NA Intergenic Intergenic 14589 ENSMUSG00000101328.1 ENSMUSG00000101328 ENSMUST00000163337 Rpl30-ps6 processed_pseudogene Interval_71324 chr17 22267143 22267845 + 0 NA Intergenic Intergenic -41878 ENSMUSG00000096433.2 ENSMUSG00000096433 ENSMUST00000179996 Zfp994 protein_coding Interval_112099 chr4 34678718 34679066 + 0 NA intron (ENSMUSG00000028293.14, intron 1 of 5) protein_coding-intron (ENSMUSG00000028293.14, intron 2 of 7) -4987 ENSMUSG00000088338.1 ENSMUSG00000088338 ENSMUST00000157713 Gm22849 misc_RNA Interval_164713 chr9 40765858 40766125 + 0 NA intron (ENSMUSG00000032024.10, intron 2 of 6) protein_coding-intron (ENSMUSG00000032024.10, intron 2 of 6) -3736 ENSMUSG00000111189.1 ENSMUSG00000111189 ENSMUST00000216792 Gm48293 antisense Interval_174273 chrX 142821955 142822207 + 0 NA intron (ENSMUSG00000047045.17, intron 2 of 4) protein_coding-intron (ENSMUSG00000047045.17, intron 5 of 6) -45734 ENSMUSG00000081463.1 ENSMUSG00000081463 ENSMUST00000120474 Gm15049 processed_pseudogene Interval_158626 chr8 84840221 84841033 + 0 NA promoter-TSS (ENSMUSG00000003813.15) protein_coding-promoter-TSS (ENSMUSG00000003813.15) -1947 ENSMUSG00000003813.15 ENSMUSG00000003813 ENSMUST00000125711 Rad23a protein_coding Interval_80619 chr18 44660838 44663134 + 0 NA promoter-TSS (ENSMUSG00000097610.2) antisense-promoter-TSS (ENSMUSG00000097610.2) -117 ENSMUSG00000097610.2 ENSMUSG00000097610 ENSMUST00000202771 A930012L18Rik antisense Interval_25278 chr11 46071107 46071842 + 0 NA intron (ENSMUSG00000011256.16, intron 3 of 22) protein_coding-intron (ENSMUSG00000011256.16, intron 3 of 22) -19153 ENSMUSG00000069899.3 ENSMUSG00000069899 ENSMUST00000154156 Gm12166 protein_coding Interval_92913 chr2 68441316 68441764 + 0 NA intron (ENSMUSG00000027030.15, intron 1 of 15) protein_coding-intron (ENSMUSG00000027030.15, intron 1 of 17) -34542 ENSMUSG00000085182.1 ENSMUSG00000085182 ENSMUST00000153354 Gm13596 antisense Interval_26092 chr11 54092914 54093654 + 0 NA Intergenic Intergenic -7691 ENSMUSG00000018906.14 ENSMUSG00000018906 ENSMUST00000139315 P4ha2 protein_coding Interval_71174 chr17 20824943 20825851 + 0 NA Intergenic Intergenic 13779 ENSMUSG00000117148.1 ENSMUSG00000117148 ENSMUST00000076759 Vmn1r229 protein_coding Interval_27357 chr11 66930848 66931541 + 0 NA intron (ENSMUSG00000072834.4, intron 3 of 3) antisense-intron (ENSMUSG00000072834.4, intron 3 of 3) 15892 ENSMUSG00000072834.4 ENSMUSG00000072834 ENSMUST00000126999 Gm12298 antisense Interval_118026 chr4 128429650 128430111 + 0 NA intron (ENSMUSG00000028804.20, intron 25 of 70) protein_coding-intron (ENSMUSG00000028804.20, intron 25 of 70) -122695 ENSMUSG00000028804.20 ENSMUSG00000028804 ENSMUST00000221199 Csmd2 protein_coding Interval_50643 chr14 17171955 17173804 + 0 NA Intergenic Intergenic 51376 ENSMUSG00000114769.1 ENSMUSG00000114769 ENSMUST00000224880 Gm48312 processed_pseudogene Interval_145378 chr7 34325685 34326104 + 0 NA Intergenic Intergenic -12372 ENSMUSG00000066571.13 ENSMUSG00000066571 ENSMUST00000205618 4931406P16Rik protein_coding Interval_121204 chr4 154025521 154026553 + 0 NA promoter-TSS (ENSMUSG00000078350.11) protein_coding-promoter-TSS (ENSMUSG00000078350.11) -421 ENSMUSG00000078350.11 ENSMUSG00000078350 ENSMUST00000126624 Smim1 protein_coding Interval_40788 chr12 108431630 108431986 + 0 NA intron (ENSMUSG00000058070.14, intron 1 of 20) protein_coding-intron (ENSMUSG00000058070.14, intron 1 of 21) 9462 ENSMUSG00000082203.1 ENSMUSG00000082203 ENSMUST00000119205 Gm15636 processed_pseudogene Interval_149224 chr7 96411247 96411551 + 0 NA intron (ENSMUSG00000048078.16, intron 2 of 2) protein_coding-intron (ENSMUSG00000048078.16, intron 2 of 32) 24618 ENSMUSG00000082780.2 ENSMUSG00000082780 ENSMUST00000117302 Rps11-ps5 processed_pseudogene Interval_57832 chr15 22665847 22666640 + 0 NA intron (ENSMUSG00000040420.15, intron 1 of 6) protein_coding-intron (ENSMUSG00000040420.15, intron 1 of 6) 48587 ENSMUSG00000021927.7 ENSMUSG00000021927 ENSMUST00000022493 Hnrnpa1l2-ps2 processed_pseudogene Interval_76398 chr17 79942371 79943131 + 0 NA Intergenic Intergenic -8179 ENSMUSG00000117458.1 ENSMUSG00000117458 ENSMUST00000234229 Gm6552 processed_pseudogene Interval_28817 chr11 78511849 78513796 + 0 NA promoter-TSS (ENSMUSG00000051232.13) protein_coding-promoter-TSS (ENSMUSG00000051232.13) -739 ENSMUSG00000051232.13 ENSMUSG00000051232 ENSMUST00000148393 Tmem199 protein_coding Interval_155019 chr8 25742603 25743509 + 0 NA intron (ENSMUSG00000061313.8, intron 7 of 15) protein_coding-intron (ENSMUSG00000061313.8, intron 7 of 17) 2524 ENSMUSG00000110127.1 ENSMUSG00000110127 ENSMUST00000210843 6430710M23Rik TEC Interval_51039 chr14 21741307 21742309 + 0 NA promoter-TSS (ENSMUSG00000021768.15) protein_coding-promoter-TSS (ENSMUSG00000021768.15) 265 ENSMUSG00000084940.2 ENSMUSG00000084940 ENSMUST00000141656 Gm15935 antisense Interval_119062 chr4 135285506 135287658 + 0 NA Intergenic Intergenic 4093 ENSMUSG00000087270.2 ENSMUSG00000087270 ENSMUST00000120974 Gm12983 processed_pseudogene Interval_133708 chr6 9145064 9145921 + 0 NA intron (ENSMUSG00000046178.3, intron 2 of 2) protein_coding-intron (ENSMUSG00000046178.3, intron 1 of 1) -1274 ENSMUSG00000107851.1 ENSMUSG00000107851 ENSMUST00000203681 Gm35736 processed_pseudogene Interval_54102 chr14 65317505 65318070 + 0 NA intron (ENSMUSG00000034532.9, intron 7 of 7) protein_coding-intron (ENSMUSG00000034532.9, intron 7 of 7) -8544 ENSMUSG00000114209.1 ENSMUSG00000114209 ENSMUST00000223901 Gm48433 lincRNA Interval_169742 chr9 100847169 100847365 + 0 NA promoter-TSS (ENSMUSG00000037286.15) protein_coding-promoter-TSS (ENSMUSG00000037286.15) -29824 ENSMUSG00000103624.1 ENSMUSG00000103624 ENSMUST00000193413 Gm3081 TEC Interval_173096 chrX 71559332 71559713 + 0 NA TTS (ENSMUSG00000015217.11) protein_coding-TTS (ENSMUSG00000015217.11) 1739 ENSMUSG00000015217.11 ENSMUSG00000015217 ENSMUST00000132145 Hmgb3 protein_coding Interval_84038 chr19 6892363 6892581 + 0 NA Intergenic Intergenic 17058 ENSMUSG00000024953.17 ENSMUSG00000024953 ENSMUST00000173091 Prdx5 protein_coding Interval_82112 chr18 67805971 67806417 + 0 NA TTS (ENSMUSG00000024542.9) protein_coding-TTS (ENSMUSG00000024542.9) -6251 ENSMUSG00000118134.1 ENSMUSG00000118134 ENSMUST00000237968 4930549G23Rik antisense Interval_19483 chr10 100037549 100040060 + 0 NA intron (ENSMUSG00000019966.18, intron 1 of 3) protein_coding-intron (ENSMUSG00000019966.18, intron 1 of 8) -49252 ENSMUSG00000019966.18 ENSMUSG00000019966 ENSMUST00000219881 Kitl protein_coding Interval_14099 chr10 26995393 26995927 + 0 NA intron (ENSMUSG00000019899.17, intron 15 of 21) protein_coding-intron (ENSMUSG00000019899.17, intron 58 of 64) 29575 ENSMUSG00000112804.1 ENSMUSG00000112804 ENSMUST00000217928 Gm30534 processed_pseudogene Interval_110347 chr3 157238863 157239127 + 0 NA intron (ENSMUSG00000040037.13, intron 6 of 6) protein_coding-intron (ENSMUSG00000040037.13, intron 6 of 6) -1664 ENSMUSG00000094982.1 ENSMUSG00000094982 ENSMUST00000177876 Gm23725 snRNA Interval_161843 chr8 123140206 123140597 + 0 NA exon (ENSMUSG00000000739.14, exon 7 of 7) protein_coding-exon (ENSMUSG00000000739.14, exon 7 of 7) 10295 ENSMUSG00000098582.1 ENSMUSG00000098582 ENSMUST00000184815 Mir7080 miRNA Interval_57584 chr15 12605973 12606578 + 0 NA intron (ENSMUSG00000022197.16, intron 2 of 4) protein_coding-intron (ENSMUSG00000022197.16, intron 2 of 4) 29071 ENSMUSG00000103130.1 ENSMUSG00000103130 ENSMUST00000191701 F830212C03Rik TEC Interval_49417 chr13 111837305 111837836 + 0 NA Intergenic Intergenic 15052 ENSMUSG00000086861.1 ENSMUSG00000086861 ENSMUST00000149661 Gm15325 lincRNA Interval_63914 chr16 4549181 4549764 + 0 NA intron (ENSMUSG00000005718.8, intron 4 of 5) protein_coding-intron (ENSMUSG00000005718.8, intron 4 of 6) -7658 ENSMUSG00000022519.14 ENSMUSG00000022519 ENSMUST00000230817 Srl protein_coding Interval_41277 chr12 112349233 112350066 + 0 NA exon (ENSMUSG00000103080.1, exon 1 of 1) TEC-exon (ENSMUSG00000103080.1, exon 1 of 1) 418 ENSMUSG00000103080.1 ENSMUSG00000103080 ENSMUST00000194990 Gm38123 TEC Interval_146619 chr7 48632350 48632804 + 0 NA Intergenic Intergenic 11234 ENSMUSG00000070546.2 ENSMUSG00000070546 ENSMUST00000094383 Mrgprb3 protein_coding Interval_138897 chr6 93167272 93167545 + 0 NA intron (ENSMUSG00000097462.7, intron 2 of 9) antisense-intron (ENSMUSG00000097462.7, intron 2 of 9) -27533 ENSMUSG00000108256.1 ENSMUSG00000108256 ENSMUST00000203992 Gm43923 TEC Interval_8578 chr1 143263165 143264174 + 0 NA Intergenic Intergenic -169053 ENSMUSG00000101795.2 ENSMUSG00000101795 ENSMUST00000185806 Gm5835 processed_pseudogene Interval_20250 chr10 116433200 116433799 + 0 NA intron (ENSMUSG00000054934.10, intron 2 of 2) protein_coding-intron (ENSMUSG00000054934.10, intron 2 of 2) 15447 ENSMUSG00000020164.7 ENSMUSG00000020164 ENSMUST00000134586 Kcnmb4os1 antisense Interval_91668 chr2 46604648 46604867 + 0 NA Intergenic Intergenic 2326 ENSMUSG00000089144.1 ENSMUSG00000089144 ENSMUST00000158519 Gm25264 snoRNA Interval_68103 chr16 65093033 65093748 + 0 NA intron (ENSMUSG00000050783.5, intron 1 of 2) protein_coding-intron (ENSMUSG00000050783.5, intron 1 of 2) 12464 ENSMUSG00000050783.5 ENSMUSG00000050783 ENSMUST00000063076 Htr1f protein_coding Interval_86438 chr19 40513099 40514225 + 0 NA promoter-TSS (ENSMUSG00000025006.18) protein_coding-promoter-TSS (ENSMUSG00000025006.18) 47396 ENSMUSG00000096592.1 ENSMUSG00000096592 ENSMUST00000120920 Gm15801 processed_pseudogene Interval_70021 chr17 4626066 4626700 + 0 NA Intergenic Intergenic -8595 ENSMUSG00000116767.1 ENSMUSG00000116767 ENSMUST00000232624 4930517M08Rik lincRNA Interval_74395 chr17 49898557 49899203 + 0 NA intron (ENSMUSG00000023999.14, intron 19 of 22) protein_coding-intron (ENSMUSG00000023999.14, intron 4 of 7) -2913 ENSMUSG00000090227.1 ENSMUSG00000090227 ENSMUST00000159471 Gm16554 antisense Interval_21980 chr11 5530807 5531398 + 0 NA exon (ENSMUSG00000020482.4, exon 5 of 5) protein_coding-exon (ENSMUSG00000020482.4, exon 5 of 5) 10107 ENSMUSG00000020484.19 ENSMUSG00000020484 ENSMUST00000149159 Xbp1 protein_coding Interval_126254 chr5 84401126 84401387 + 0 NA intron (ENSMUSG00000029245.16, intron 1 of 3) protein_coding-intron (ENSMUSG00000029245.16, intron 1 of 15) -27549 ENSMUSG00000106598.1 ENSMUSG00000106598 ENSMUST00000199389 Gm43532 lincRNA Interval_73699 chr17 42865496 42866002 + 0 NA intron (ENSMUSG00000061665.7, intron 1 of 17) protein_coding-intron (ENSMUSG00000061665.7, intron 1 of 17) -34719 ENSMUSG00000061665.7 ENSMUSG00000061665 ENSMUST00000233626 Cd2ap protein_coding Interval_171245 chr9 115578105 115578344 + 0 NA Intergenic Intergenic 48494 ENSMUSG00000094630.1 ENSMUSG00000094630 ENSMUST00000082810 n-R5s92 rRNA Interval_97963 chr2 146216124 146216324 + 0 NA Intergenic Intergenic 1611 ENSMUSG00000037143.17 ENSMUSG00000037143 ENSMUST00000167179 Cfap61 protein_coding Interval_39111 chr12 85150553 85151697 + 0 NA exon (ENSMUSG00000019235.9, exon 1 of 1) protein_coding-exon (ENSMUSG00000019235.9, exon 1 of 1) 125 ENSMUSG00000019235.9 ENSMUSG00000019235 ENSMUST00000223399 Rps6kl1 protein_coding Interval_44741 chr13 48148791 48149279 + 0 NA intron (ENSMUSG00000114457.1, intron 2 of 3) antisense-intron (ENSMUSG00000097622.2, intron 1 of 2) 88216 ENSMUSG00000114457.1 ENSMUSG00000114457 ENSMUST00000225626 Gm36346 lincRNA Interval_7732 chr1 133330810 133331309 + 0 NA Intergenic Intergenic 3847 ENSMUSG00000116158.1 ENSMUSG00000116158 ENSMUST00000178033 Kiss1 protein_coding Interval_62676 chr15 96197459 96199134 + 0 NA intron (ENSMUSG00000097536.2, intron 1 of 6) lincRNA-intron (ENSMUSG00000097536.2, intron 1 of 6) 55691 ENSMUSG00000097619.8 ENSMUSG00000097619 ENSMUST00000229950 4833422M21Rik processed_transcript Interval_142843 chr6 146390345 146391143 + 0 NA intron (ENSMUSG00000030287.15, intron 12 of 13) protein_coding-intron (ENSMUSG00000030287.15, intron 13 of 56) 14327 ENSMUSG00000107743.1 ENSMUSG00000107743 ENSMUST00000204247 Gm44087 TEC Interval_12350 chr1 192361493 192362109 + 0 NA intron (ENSMUSG00000058248.12, intron 7 of 10) protein_coding-intron (ENSMUSG00000058248.12, intron 7 of 10) -72939 ENSMUSG00000058248.12 ENSMUSG00000058248 ENSMUST00000151152 Kcnh1 protein_coding Interval_24425 chr11 33175173 33175416 + 0 NA Intergenic Intergenic 2375 ENSMUSG00000099902.1 ENSMUSG00000099902 ENSMUST00000119969 Gm12115 processed_pseudogene Interval_65110 chr16 19705744 19706130 + 0 NA intron (ENSMUSG00000041247.8, intron 1 of 5) protein_coding-intron (ENSMUSG00000041247.8, intron 1 of 5) 438 ENSMUSG00000041247.8 ENSMUSG00000041247 ENSMUST00000081880 Lamp3 protein_coding Interval_151684 chr7 126001916 126002234 + 0 NA intron (ENSMUSG00000046182.8, intron 2 of 6) protein_coding-intron (ENSMUSG00000046182.8, intron 2 of 6) 62372 ENSMUSG00000108376.1 ENSMUSG00000108376 ENSMUST00000206586 Gm44874 TEC Interval_144769 chr7 28139528 28140231 + 0 NA exon (ENSMUSG00000078776.9, exon 5 of 20) protein_coding-exon (ENSMUSG00000078776.9, exon 5 of 20) 10063 ENSMUSG00000078776.9 ENSMUSG00000078776 ENSMUST00000150948 9530053A07Rik protein_coding Interval_108702 chr3 130492946 130493218 + 0 NA intron (ENSMUSG00000058897.18, intron 10 of 37) protein_coding-intron (ENSMUSG00000058897.18, intron 10 of 37) -46407 ENSMUSG00000105011.1 ENSMUSG00000105011 ENSMUST00000196743 Gm43210 TEC Interval_136345 chr6 53531231 53531481 + 0 NA intron (ENSMUSG00000053007.9, intron 4 of 5) protein_coding-intron (ENSMUSG00000053007.9, intron 5 of 10) 97382 ENSMUSG00000096147.1 ENSMUSG00000096147 ENSMUST00000083282 Gm25818 snRNA Interval_125633 chr5 72905654 72906062 + 0 NA Intergenic Intergenic -8810 ENSMUSG00000036087.18 ENSMUSG00000036087 ENSMUST00000145939 Slain2 protein_coding Interval_64906 chr16 17121150 17121833 + 0 NA promoter-TSS (ENSMUSG00000049916.12) protein_coding-promoter-TSS (ENSMUSG00000049916.12) 2651 ENSMUSG00000065572.1 ENSMUSG00000065572 ENSMUST00000083638 Mir130b miRNA Interval_81013 chr18 52909148 52910128 + 0 NA intron (ENSMUSG00000024534.15, intron 8 of 8) protein_coding-intron (ENSMUSG00000024534.15, intron 11 of 11) -42911 ENSMUSG00000118195.1 ENSMUSG00000118195 ENSMUST00000235787 Gm8572 processed_pseudogene Interval_67548 chr16 50668394 50670043 + 0 NA Intergenic Intergenic -2872 ENSMUSG00000083692.1 ENSMUSG00000083692 ENSMUST00000122140 Gm9575 processed_pseudogene Interval_96322 chr2 121609754 121610533 + 0 NA intron (ENSMUSG00000027238.17, intron 1 of 7) protein_coding-intron (ENSMUSG00000027238.17, intron 1 of 13) -58792 ENSMUSG00000027238.17 ENSMUSG00000027238 ENSMUST00000153704 Frmd5 protein_coding Interval_42001 chr13 6307011 6307309 + 0 NA Intergenic Intergenic -12446 ENSMUSG00000114097.1 ENSMUSG00000114097 ENSMUST00000221255 Gm35615 lincRNA Interval_108712 chr3 130614118 130614569 + 0 NA Intergenic Intergenic -3229 ENSMUSG00000019232.14 ENSMUSG00000019232 ENSMUST00000170664 Etnppl protein_coding Interval_50083 chr14 7864049 7864549 + 0 NA intron (ENSMUSG00000025278.9, intron 1 of 45) protein_coding-intron (ENSMUSG00000025278.9, intron 1 of 45) -20442 ENSMUSG00000025278.9 ENSMUSG00000025278 ENSMUST00000228206 Flnb protein_coding Interval_9130 chr1 153899179 153901458 + 0 NA promoter-TSS (ENSMUSG00000045968.7) protein_coding-promoter-TSS (ENSMUSG00000045968.7) -90 ENSMUSG00000045968.7 ENSMUSG00000045968 ENSMUST00000190620 Teddm2 protein_coding Interval_35362 chr12 21034525 21035108 + 0 NA intron (ENSMUSG00000116627.1, intron 3 of 3) protein_coding-intron (ENSMUSG00000052632.16, intron 1 of 9) -8143 ENSMUSG00000092229.3 ENSMUSG00000092229 ENSMUST00000174304 Gm5977 transcribed_unprocessed_pseudogene Interval_102803 chr3 31162475 31163575 + 0 NA intron (ENSMUSG00000037625.7, intron 2 of 2) protein_coding-intron (ENSMUSG00000037625.7, intron 2 of 2) 13105 ENSMUSG00000037625.7 ENSMUSG00000037625 ENSMUST00000046174 Cldn11 protein_coding Interval_162250 chr8 126455171 126455868 + 0 NA intron (ENSMUSG00000090290.2, intron 10 of 29) protein_coding-intron (ENSMUSG00000090290.2, intron 10 of 29) 19546 ENSMUSG00000090290.2 ENSMUSG00000090290 ENSMUST00000170518 Tarbp1 protein_coding Interval_95906 chr2 118250347 118250588 + 0 NA intron (ENSMUSG00000027344.14, intron 3 of 11) protein_coding-intron (ENSMUSG00000027344.14, intron 3 of 5) -1685 ENSMUSG00000093368.1 ENSMUSG00000093368 ENSMUST00000175627 Gm22800 miRNA Interval_2674 chr1 43171680 43172590 + 0 NA intron (ENSMUSG00000008136.14, intron 1 of 5) protein_coding-intron (ENSMUSG00000008136.14, intron 1 of 5) -17021 ENSMUSG00000094497.1 ENSMUSG00000094497 ENSMUST00000178557 Gm8210 processed_pseudogene Interval_4605 chr1 75413457 75414342 + 0 NA intron (ENSMUSG00000026207.16, intron 16 of 38) protein_coding-intron (ENSMUSG00000026207.16, intron 18 of 40) -17536 ENSMUSG00000086053.1 ENSMUSG00000086053 ENSMUST00000132100 Gm15178 antisense Interval_145221 chr7 30764994 30765431 + 0 NA intron (ENSMUSG00000060962.12, intron 1 of 15) protein_coding-intron (ENSMUSG00000060962.12, intron 4 of 19) 155 ENSMUSG00000060962.12 ENSMUSG00000060962 ENSMUST00000041703 Dmkn protein_coding Interval_136570 chr6 55791369 55792721 + 0 NA Intergenic Intergenic -94780 ENSMUSG00000037973.6 ENSMUSG00000037973 ENSMUST00000169699 Itprid1 protein_coding Interval_147561 chr7 68283864 68285208 + 0 NA intron (ENSMUSG00000074071.11, intron 1 of 4) protein_coding-intron (ENSMUSG00000074071.11, intron 1 of 8) 8541 ENSMUSG00000074071.11 ENSMUSG00000074071 ENSMUST00000153458 Fam169b protein_coding Interval_66248 chr16 32625702 32626525 + 0 NA intron (ENSMUSG00000022797.16, intron 2 of 4) protein_coding-intron (ENSMUSG00000022797.16, intron 16 of 18) 5724 ENSMUSG00000022797.16 ENSMUSG00000022797 ENSMUST00000128285 Tfrc protein_coding Interval_58161 chr15 30083537 30084241 + 0 NA Intergenic Intergenic -31333 ENSMUSG00000065726.1 ENSMUSG00000065726 ENSMUST00000083792 Gm26163 snoRNA Interval_131363 chr5 136716355 136717292 + 0 NA Intergenic Intergenic 19044 ENSMUSG00000005474.9 ENSMUSG00000005474 ENSMUST00000197849 Myl10 protein_coding Interval_98891 chr2 155832243 155833136 + 0 NA intron (ENSMUSG00000074647.4, intron 1 of 3) protein_coding-intron (ENSMUSG00000074647.4, intron 1 of 3) 2165 ENSMUSG00000074647.4 ENSMUSG00000074647 ENSMUST00000239423 Fam83c protein_coding Interval_157221 chr8 68117442 68118214 + 0 NA intron (ENSMUSG00000030465.19, intron 1 of 1) protein_coding-intron (ENSMUSG00000030465.19, intron 1 of 1) 94199 ENSMUSG00000030465.19 ENSMUSG00000030465 ENSMUST00000178529 Psd3 protein_coding Interval_18107 chr10 82651007 82653608 + 0 NA TTS (ENSMUSG00000020251.13) protein_coding-TTS (ENSMUSG00000020251.13) 10866 ENSMUSG00000034674.18 ENSMUSG00000034674 ENSMUST00000142658 Tdg protein_coding Interval_133337 chr6 3447417 3448095 + 0 NA Intergenic Intergenic 39673 ENSMUSG00000044156.14 ENSMUSG00000044156 ENSMUST00000200972 Hepacam2 protein_coding Interval_153414 chr7 144532109 144532520 + 0 NA intron (ENSMUSG00000037519.17, intron 1 of 5) protein_coding-intron (ENSMUSG00000037519.17, intron 2 of 30) -35041 ENSMUSG00000073778.2 ENSMUSG00000073778 ENSMUST00000097928 Faddos antisense Interval_96482 chr2 124880935 124881418 + 0 NA Intergenic Intergenic 172521 ENSMUSG00000087450.1 ENSMUSG00000087450 ENSMUST00000137397 Gm13994 lincRNA Interval_33610 chr11 117482400 117483493 + 0 NA promoter-TSS (ENSMUSG00000110653.1) lincRNA-promoter-TSS (ENSMUSG00000110653.1) -349 ENSMUSG00000110653.1 ENSMUSG00000110653 ENSMUST00000212879 Gm34418 lincRNA Interval_32139 chr11 105507777 105508820 + 0 NA Intergenic Intergenic 73853 ENSMUSG00000086089.1 ENSMUSG00000086089 ENSMUST00000155987 Gm11640 antisense Interval_138760 chr6 91678384 91679422 + 0 NA exon (ENSMUSG00000108751.1, exon 1 of 1) TEC-exon (ENSMUSG00000108751.1, exon 1 of 1) 320 ENSMUSG00000108751.1 ENSMUSG00000108751 ENSMUST00000206576 Gm45217 TEC Interval_155896 chr8 40817535 40817725 + 0 NA Intergenic Intergenic -5360 ENSMUSG00000054033.6 ENSMUSG00000054033 ENSMUST00000066814 Adam39 protein_coding Interval_56541 chr14 120212022 120212774 + 0 NA Intergenic Intergenic -70769 ENSMUSG00000115146.1 ENSMUSG00000115146 ENSMUST00000226598 Gm4681 lincRNA Interval_54141 chr14 65661769 65662038 + 0 NA Intergenic Intergenic -14574 ENSMUSG00000022032.14 ENSMUSG00000022032 ENSMUST00000154373 Scara5 protein_coding Interval_165528 chr9 49044267 49044482 + 0 NA Intergenic Intergenic 3920 ENSMUSG00000105298.1 ENSMUSG00000105298 ENSMUST00000197641 Cldn25-ps processed_pseudogene Interval_2147 chr1 36720638 36720849 + 0 NA intron (ENSMUSG00000102416.4, intron 2 of 8) protein_coding-intron (ENSMUSG00000102416.4, intron 2 of 4) 6205 ENSMUSG00000102416.4 ENSMUSG00000102416 ENSMUST00000193459 4933424G06Rik protein_coding Interval_168538 chr9 83303869 83305560 + 0 NA Intergenic Intergenic -41445 ENSMUSG00000111443.1 ENSMUSG00000111443 ENSMUST00000217447 Gm46123 lincRNA Interval_116350 chr4 110103482 110104467 + 0 NA Intergenic Intergenic 125921 ENSMUSG00000047143.3 ENSMUSG00000047143 ENSMUST00000061187 Dmrta2 protein_coding Interval_39688 chr12 92472697 92473449 + 0 NA TTS (ENSMUSG00000113499.1) processed_pseudogene-TTS (ENSMUSG00000113499.1) 888 ENSMUSG00000113499.1 ENSMUSG00000113499 ENSMUST00000223493 Gm18500 processed_pseudogene Interval_168310 chr9 78591027 78591325 + 0 NA Intergenic Intergenic -3149 ENSMUSG00000049624.14 ENSMUSG00000049624 ENSMUST00000119213 Slc17a5 protein_coding Interval_115648 chr4 101601915 101602316 + 0 NA intron (ENSMUSG00000028528.17, intron 4 of 11) protein_coding-intron (ENSMUSG00000028528.17, intron 4 of 18) -45678 ENSMUSG00000035212.14 ENSMUSG00000035212 ENSMUST00000106927 Leprot protein_coding Interval_110113 chr3 153390087 153392665 + 0 NA intron (ENSMUSG00000052544.9, intron 3 of 4) protein_coding-intron (ENSMUSG00000052544.9, intron 2 of 2) 77663 ENSMUSG00000099114.1 ENSMUSG00000099114 ENSMUST00000184201 Gm27405 miRNA Interval_149137 chr7 94522007 94522210 + 0 NA intron (ENSMUSG00000108532.1, intron 2 of 2) lincRNA-intron (ENSMUSG00000108532.1, intron 2 of 2) 46528 ENSMUSG00000108516.1 ENSMUSG00000108516 ENSMUST00000205948 Gm44602 processed_pseudogene Interval_165678 chr9 50879345 50879631 + 0 NA TTS (ENSMUSG00000032058.14) protein_coding-TTS (ENSMUSG00000032058.14) 6476 ENSMUSG00000032058.14 ENSMUSG00000032058 ENSMUST00000176414 Ppp2r1b protein_coding Interval_5415 chr1 88620621 88620949 + 0 NA Intergenic Intergenic -32300 ENSMUSG00000104057.1 ENSMUSG00000104057 ENSMUST00000194311 Gm38130 TEC Interval_8655 chr1 146337550 146337762 + 0 NA Intergenic Intergenic -82780 ENSMUSG00000090323.2 ENSMUSG00000090323 ENSMUST00000163646 Gm5263 processed_pseudogene Interval_106440 chr3 96304200 96304955 + 0 NA Intergenic Intergenic -10644 ENSMUSG00000015947.10 ENSMUSG00000015947 ENSMUST00000200420 Fcgr1 protein_coding Interval_103431 chr3 41522409 41523185 + 0 NA intron (ENSMUSG00000106223.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000106223.1, intron 1 of 1) 5677 ENSMUSG00000106223.1 ENSMUSG00000106223 ENSMUST00000197509 2400006E01Rik lincRNA Interval_44542 chr13 45932007 45932582 + 0 NA intron (ENSMUSG00000046876.16, intron 1 of 2) protein_coding-intron (ENSMUSG00000046876.16, intron 2 of 7) -3746 ENSMUSG00000113987.1 ENSMUSG00000113987 ENSMUST00000222376 4930453C13Rik antisense Interval_91887 chr2 51033431 51034504 + 0 NA Intergenic Intergenic 115143 ENSMUSG00000017144.8 ENSMUSG00000017144 ENSMUST00000140864 Rnd3 protein_coding Interval_94323 chr2 88880306 88880505 + 0 NA Intergenic Intergenic 17174 ENSMUSG00000062757.2 ENSMUSG00000062757 ENSMUST00000077302 Olfr1206 protein_coding Interval_120616 chr4 149711920 149712347 + 0 NA Intergenic Intergenic 25637 ENSMUSG00000044700.15 ENSMUSG00000044700 ENSMUST00000145405 Tmem201 protein_coding Interval_67914 chr16 59492811 59494500 + 0 NA TTS (ENSMUSG00000022723.16) protein_coding-TTS (ENSMUSG00000022723.16) 21587 ENSMUSG00000022724.15 ENSMUSG00000022724 ENSMUST00000131272 Riox2 protein_coding Interval_172612 chrX 38417270 38417639 + 0 NA intron (ENSMUSG00000016534.15, intron 8 of 8) protein_coding-intron (ENSMUSG00000016534.15, intron 8 of 8) 20519 ENSMUSG00000081473.3 ENSMUSG00000081473 ENSMUST00000119359 Gm4853 processed_pseudogene Interval_70652 chr17 12825241 12825829 + 0 NA intron (ENSMUSG00000078247.5, intron 1 of 1) antisense-intron (ENSMUSG00000078247.5, intron 2 of 2) -4693 ENSMUSG00000089817.1 ENSMUSG00000089817 ENSMUST00000161205 Gm7162 processed_pseudogene Interval_153413 chr7 144527724 144528026 + 0 NA intron (ENSMUSG00000037519.17, intron 1 of 5) protein_coding-intron (ENSMUSG00000037519.17, intron 2 of 30) -39480 ENSMUSG00000073778.2 ENSMUSG00000073778 ENSMUST00000097928 Faddos antisense Interval_167014 chr9 64546086 64547188 + 0 NA promoter-TSS (ENSMUSG00000036466.17) protein_coding-promoter-TSS (ENSMUSG00000036466.17) 161011 ENSMUSG00000036466.17 ENSMUSG00000036466 ENSMUST00000153934 Megf11 protein_coding Interval_81061 chr18 53416889 53418482 + 0 NA intron (ENSMUSG00000024538.8, intron 1 of 4) protein_coding-intron (ENSMUSG00000024538.8, intron 1 of 4) 430 ENSMUSG00000024538.8 ENSMUSG00000024538 ENSMUST00000025419 Ppic protein_coding Interval_67560 chr16 50798257 50798456 + 0 NA Intergenic Intergenic 14878 ENSMUSG00000092276.2 ENSMUSG00000092276 ENSMUST00000174511 1700116B05Rik lincRNA Interval_27735 chr11 69729200 69729475 + 0 NA TTS (ENSMUSG00000081333.1) processed_pseudogene-TTS (ENSMUSG00000081333.1) 1247 ENSMUSG00000081333.1 ENSMUSG00000081333 ENSMUST00000120581 Gm12307 processed_pseudogene Interval_19187 chr10 95378314 95378982 + 0 NA Intergenic Intergenic 23760 ENSMUSG00000100550.2 ENSMUSG00000100550 ENSMUST00000219492 2310039L15Rik lincRNA Interval_147390 chr7 66387355 66389772 + 0 NA promoter-TSS (ENSMUSG00000015133.17) protein_coding-promoter-TSS (ENSMUSG00000015133.17) -6839 ENSMUSG00000098353.1 ENSMUSG00000098353 ENSMUST00000184685 Mir7057 miRNA Interval_120122 chr4 141962976 141963573 + 0 NA exon (ENSMUSG00000051435.11, exon 11 of 11) protein_coding-exon (ENSMUSG00000051435.11, exon 11 of 11) -13505 ENSMUSG00000081079.1 ENSMUSG00000081079 ENSMUST00000119881 Gm13059 processed_pseudogene Interval_885 chr1 12997313 12998136 + 0 NA Intergenic Intergenic -6547 ENSMUSG00000025938.16 ENSMUSG00000025938 ENSMUST00000191566 Slco5a1 protein_coding Interval_93411 chr2 72924284 72925686 + 0 NA Intergenic Intergenic 26002 ENSMUSG00000092851.1 ENSMUSG00000092851 ENSMUST00000175110 Gm25960 miRNA Interval_132949 chr5 148918056 148918608 + 0 NA intron (ENSMUSG00000041298.15, intron 3 of 3) protein_coding-intron (ENSMUSG00000041298.15, intron 3 of 10) -8356 ENSMUSG00000106810.1 ENSMUSG00000106810 ENSMUST00000202134 Gm43600 unprocessed_pseudogene Interval_27147 chr11 63349415 63351325 + 0 NA Intergenic Intergenic -37059 ENSMUSG00000081600.3 ENSMUSG00000081600 ENSMUST00000119246 Gm12286 processed_pseudogene Interval_27467 chr11 68052461 68053693 + 0 NA promoter-TSS (ENSMUSG00000089599.1) rRNA-promoter-TSS (ENSMUSG00000089599.1) -258 ENSMUSG00000089599.1 ENSMUSG00000089599 ENSMUST00000158974 Gm26157 rRNA Interval_137112 chr6 67524968 67525270 + 0 NA Intergenic Intergenic -7370 ENSMUSG00000105650.1 ENSMUSG00000105650 ENSMUST00000199480 Gm42889 lincRNA Interval_131290 chr5 136191106 136192680 + 0 NA intron (ENSMUSG00000039737.11, intron 2 of 3) protein_coding-intron (ENSMUSG00000039737.11, intron 2 of 3) 7070 ENSMUSG00000039737.11 ENSMUSG00000039737 ENSMUST00000149151 Prkrip1 protein_coding Interval_68835 chr16 87482094 87483006 + 0 NA promoter-TSS (ENSMUSG00000025616.14) protein_coding-promoter-TSS (ENSMUSG00000025616.14) 3520 ENSMUSG00000025613.13 ENSMUSG00000025613 ENSMUST00000176750 Cct8 protein_coding Interval_150766 chr7 114213742 114214184 + 0 NA Intergenic Intergenic -4875 ENSMUSG00000110407.1 ENSMUSG00000110407 ENSMUST00000211484 Gm45454 processed_pseudogene Interval_31175 chr11 98716023 98716472 + 0 NA exon (ENSMUSG00000017210.14, exon 8 of 26) protein_coding-exon (ENSMUSG00000017210.14, exon 8 of 26) -5158 ENSMUSG00000088169.1 ENSMUSG00000088169 ENSMUST00000157544 Gm22059 snoRNA Interval_86829 chr19 44199130 44199960 + 0 NA Intergenic Intergenic -7103 ENSMUSG00000037578.4 ENSMUSG00000037578 ENSMUST00000161357 Pkd2l1 protein_coding Interval_51762 chr14 32048722 32048956 + 0 NA intron (ENSMUSG00000021903.11, intron 3 of 7) protein_coding-intron (ENSMUSG00000021903.11, intron 5 of 9) -12501 ENSMUSG00000115628.1 ENSMUSG00000115628 ENSMUST00000228805 Gm49084 processed_pseudogene Interval_45331 chr13 54484004 54484382 + 0 NA Intergenic Intergenic -15405 ENSMUSG00000025872.5 ENSMUSG00000025872 ENSMUST00000135404 Thoc3 protein_coding Interval_126874 chr5 96353004 96353785 + 0 NA Intergenic Intergenic -20812 ENSMUSG00000034687.8 ENSMUSG00000034687 ENSMUST00000198016 Fras1 protein_coding Interval_28612 chr11 77149857 77151038 + 0 NA TTS (ENSMUSG00000102038.1) processed_pseudogene-TTS (ENSMUSG00000102038.1) 819 ENSMUSG00000102038.1 ENSMUSG00000102038 ENSMUST00000119288 Gm12345 processed_pseudogene Interval_34432 chr12 4122896 4123372 + 0 NA Intergenic Intergenic -9969 ENSMUSG00000020654.15 ENSMUSG00000020654 ENSMUST00000127110 Adcy3 protein_coding Interval_29978 chr11 88498210 88499424 + 0 NA intron (ENSMUSG00000069769.13, intron 1 of 5) protein_coding-intron (ENSMUSG00000069769.13, intron 6 of 13) -65303 ENSMUSG00000084411.2 ENSMUSG00000084411 ENSMUST00000120278 Gm11510 processed_pseudogene Interval_79919 chr18 35922612 35923170 + 0 NA promoter-TSS (ENSMUSG00000118122.1) lincRNA-promoter-TSS (ENSMUSG00000118122.1) -404 ENSMUSG00000118122.1 ENSMUSG00000118122 ENSMUST00000235914 Gm50405 lincRNA Interval_11994 chr1 188639652 188640353 + 0 NA intron (ENSMUSG00000026609.15, intron 10 of 12) protein_coding-intron (ENSMUSG00000026609.15, intron 34 of 70) -16949 ENSMUSG00000077235.1 ENSMUSG00000077235 ENSMUST00000104047 Gm25095 snoRNA Interval_31181 chr11 98740353 98742849 + 0 NA promoter-TSS (ENSMUSG00000058756.13) protein_coding-promoter-TSS (ENSMUSG00000058756.13) 800 ENSMUSG00000058756.13 ENSMUSG00000058756 ENSMUST00000124072 Thra protein_coding Interval_110353 chr3 157320882 157322952 + 0 NA Intergenic Intergenic -44081 ENSMUSG00000064510.1 ENSMUSG00000064510 ENSMUST00000082576 Gm22458 snRNA Interval_84797 chr19 16808653 16809209 + 0 NA Intergenic Intergenic 28384 ENSMUSG00000046388.4 ENSMUSG00000046388 ENSMUST00000051080 Gm9806 pseudogene Interval_31547 chr11 101294956 101295494 + 0 NA TTS (ENSMUSG00000035086.13) protein_coding-TTS (ENSMUSG00000035086.13) 7026 ENSMUSG00000035086.13 ENSMUSG00000035086 ENSMUST00000137614 Becn1 protein_coding Interval_152843 chr7 138734181 138734687 + 0 NA Intergenic Intergenic 33531 ENSMUSG00000109802.1 ENSMUSG00000109802 ENSMUST00000211166 Gm30808 lincRNA Interval_173017 chrX 63259462 63260101 + 0 NA Intergenic Intergenic -73255 ENSMUSG00000081269.1 ENSMUSG00000081269 ENSMUST00000117667 Gm14659 processed_pseudogene Interval_97142 chr2 131699679 131700625 + 0 NA intron (ENSMUSG00000086831.1, intron 1 of 2) antisense-intron (ENSMUSG00000086831.1, intron 1 of 2) 21686 ENSMUSG00000086831.1 ENSMUSG00000086831 ENSMUST00000138080 Gm14280 antisense Interval_97202 chr2 132212405 132212915 + 0 NA intron (ENSMUSG00000086756.1, intron 2 of 2) antisense-intron (ENSMUSG00000086756.1, intron 2 of 2) 35128 ENSMUSG00000027341.10 ENSMUSG00000027341 ENSMUST00000141813 Tmem230 protein_coding Interval_114328 chr4 73228340 73228860 + 0 NA Intergenic Intergenic 113943 ENSMUSG00000089194.1 ENSMUSG00000089194 ENSMUST00000158569 Gm25769 snoRNA Interval_166216 chr9 57552049 57552891 + 0 NA promoter-TSS (ENSMUSG00000032306.14) protein_coding-promoter-TSS (ENSMUSG00000032306.14) 239 ENSMUSG00000032306.14 ENSMUSG00000032306 ENSMUST00000124593 Mpi protein_coding Interval_156396 chr8 47907787 47907980 + 0 NA intron (ENSMUSG00000031563.8, intron 2 of 22) protein_coding-intron (ENSMUSG00000031563.8, intron 2 of 22) 8701 ENSMUSG00000064519.1 ENSMUSG00000064519 ENSMUST00000082585 n-R5s97 rRNA Interval_22901 chr11 17211148 17212360 + 0 NA promoter-TSS (ENSMUSG00000020116.7) protein_coding-promoter-TSS (ENSMUSG00000020116.7) -700 ENSMUSG00000020116.7 ENSMUSG00000020116 ENSMUST00000123754 Pno1 protein_coding Interval_112231 chr4 37168462 37168913 + 0 NA Intergenic Intergenic -28813 ENSMUSG00000080969.1 ENSMUSG00000080969 ENSMUST00000121654 Taf9-ps processed_pseudogene Interval_75073 chr17 62940066 62941044 + 0 NA Intergenic Intergenic -59411 ENSMUSG00000048915.12 ENSMUSG00000048915 ENSMUST00000078839 Efna5 protein_coding Interval_142634 chr6 144444513 144444735 + 0 NA intron (ENSMUSG00000041540.16, intron 3 of 6) protein_coding-intron (ENSMUSG00000041540.16, intron 3 of 13) -36601 ENSMUSG00000087157.1 ENSMUSG00000087157 ENSMUST00000156443 Sox5os2 antisense Interval_75208 chr17 64676958 64677353 + 0 NA intron (ENSMUSG00000024085.13, intron 10 of 21) protein_coding-intron (ENSMUSG00000024085.13, intron 10 of 21) -36464 ENSMUSG00000024085.13 ENSMUSG00000024085 ENSMUST00000169668 Man2a1 protein_coding Interval_58670 chr15 36918202 36918979 + 0 NA intron (ENSMUSG00000115430.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000115430.1, intron 1 of 1) 13096 ENSMUSG00000115430.1 ENSMUSG00000115430 ENSMUST00000227301 Gm41300 lincRNA Interval_60352 chr15 73129605 73129821 + 0 NA intron (ENSMUSG00000036698.11, intron 4 of 4) protein_coding-intron (ENSMUSG00000036698.11, intron 4 of 18) 39301 ENSMUSG00000068391.8 ENSMUSG00000068391 ENSMUST00000137698 Chrac1 protein_coding Interval_81430 chr18 60710568 60711055 + 0 NA intron (ENSMUSG00000054008.9, intron 2 of 14) protein_coding-intron (ENSMUSG00000054008.9, intron 1 of 13) 22339 ENSMUSG00000054008.9 ENSMUSG00000054008 ENSMUST00000237070 Ndst1 protein_coding Interval_149233 chr7 96509633 96510426 + 0 NA intron (ENSMUSG00000048078.16, intron 4 of 32) protein_coding-intron (ENSMUSG00000048078.16, intron 4 of 32) -74012 ENSMUSG00000082780.2 ENSMUSG00000082780 ENSMUST00000117302 Rps11-ps5 processed_pseudogene Interval_142563 chr6 143300898 143301977 + 0 NA Intergenic Intergenic 55544 ENSMUSG00000072679.10 ENSMUSG00000072679 ENSMUST00000160951 D6Ertd474e lincRNA Interval_160095 chr8 106368090 106368759 + 0 NA Intergenic Intergenic -46903 ENSMUSG00000031907.9 ENSMUSG00000031907 ENSMUST00000212874 Zfp90 protein_coding Interval_75931 chr17 73162983 73163252 + 0 NA intron (ENSMUSG00000054469.14, intron 1 of 4) protein_coding-intron (ENSMUSG00000054469.14, intron 2 of 5) 28568 ENSMUSG00000081492.1 ENSMUSG00000081492 ENSMUST00000118042 Gm9311 processed_pseudogene Interval_145698 chr7 37487170 37488536 + 0 NA intron (ENSMUSG00000043456.17, intron 2 of 3) protein_coding-intron (ENSMUSG00000043456.17, intron 5 of 5) -20431 ENSMUSG00000108790.1 ENSMUSG00000108790 ENSMUST00000205574 Gm44806 TEC Interval_174076 chrX 134390478 134390760 + 0 NA Intergenic Intergenic -14009 ENSMUSG00000000223.13 ENSMUSG00000000223 ENSMUST00000000228 Drp2 protein_coding Interval_144132 chr7 19575667 19575889 + 0 NA intron (ENSMUSG00000044709.6, intron 1 of 1) protein_coding-intron (ENSMUSG00000044709.6, intron 1 of 1) 1817 ENSMUSG00000044709.6 ENSMUSG00000044709 ENSMUST00000151646 Gemin7 protein_coding Interval_143012 chr6 148358670 148359094 + 0 NA promoter-TSS (ENSMUSG00000108148.1) antisense-promoter-TSS (ENSMUSG00000108148.1) 87 ENSMUSG00000108148.1 ENSMUSG00000108148 ENSMUST00000204618 Gm44020 antisense Interval_162636 chr9 7064465 7064754 + 0 NA intron (ENSMUSG00000047193.16, intron 59 of 89) protein_coding-intron (ENSMUSG00000047193.16, intron 59 of 88) 52979 ENSMUSG00000047193.16 ENSMUSG00000047193 ENSMUST00000139115 Dync2h1 protein_coding Interval_7620 chr1 132540854 132543257 + 0 NA intron (ENSMUSG00000053024.14, intron 2 of 2) protein_coding-intron (ENSMUSG00000053024.14, intron 1 of 22) 810 ENSMUSG00000053024.14 ENSMUSG00000053024 ENSMUST00000186530 Cntn2 protein_coding Interval_121472 chr4 156021767 156022396 + 0 NA TTS (ENSMUSG00000088545.1) snRNA-TTS (ENSMUSG00000088545.1) 579 ENSMUSG00000103183.1 ENSMUSG00000103183 ENSMUST00000195694 Gm37090 TEC Interval_44675 chr13 47078767 47079235 + 0 NA intron (ENSMUSG00000038080.17, intron 8 of 10) protein_coding-intron (ENSMUSG00000038080.17, intron 18 of 20) 19336 ENSMUSG00000021377.15 ENSMUSG00000021377 ENSMUST00000150652 Dek protein_coding Interval_116162 chr4 108277186 108277450 + 0 NA intron (ENSMUSG00000034636.9, intron 1 of 13) protein_coding-intron (ENSMUSG00000034636.9, intron 1 of 13) 33833 ENSMUSG00000083957.1 ENSMUSG00000083957 ENSMUST00000117326 Gm12742 processed_pseudogene Interval_87664 chr19 54083409 54084215 + 0 NA promoter-TSS (ENSMUSG00000117921.1) lincRNA-promoter-TSS (ENSMUSG00000117921.1) -747 ENSMUSG00000117921.1 ENSMUSG00000117921 ENSMUST00000236398 Gm50186 lincRNA Interval_111117 chr4 12179469 12179727 + 0 NA Intergenic Intergenic -7583 ENSMUSG00000028218.19 ENSMUSG00000028218 ENSMUST00000152219 Fam92a protein_coding Interval_141204 chr6 125588131 125588729 + 0 NA exon (ENSMUSG00000001930.17, exon 8 of 11) protein_coding-exon (ENSMUSG00000001930.17, exon 8 of 11) 35467 ENSMUSG00000001930.17 ENSMUSG00000001930 ENSMUST00000146264 Vwf protein_coding Interval_120384 chr4 148240898 148241170 + 0 NA exon (ENSMUSG00000041544.11, exon 21 of 21) protein_coding-exon (ENSMUSG00000041544.11, exon 21 of 21) 19717 ENSMUSG00000041544.11 ENSMUSG00000041544 ENSMUST00000129734 Disp3 protein_coding Interval_123208 chr5 30647540 30648629 + 0 NA promoter-TSS (ENSMUSG00000029175.17) protein_coding-promoter-TSS (ENSMUSG00000029175.17) 148 ENSMUSG00000093710.1 ENSMUSG00000093710 ENSMUST00000176598 Mir5625 miRNA Interval_84409 chr19 10698121 10698678 + 0 NA intron (ENSMUSG00000048832.9, intron 1 of 4) protein_coding-intron (ENSMUSG00000048832.9, intron 1 of 4) 9636 ENSMUSG00000048832.9 ENSMUSG00000048832 ENSMUST00000235921 Vps37c protein_coding Interval_10367 chr1 170060817 170061126 + 0 NA intron (ENSMUSG00000026674.9, intron 2 of 3) protein_coding-intron (ENSMUSG00000026674.9, intron 2 of 17) 49791 ENSMUSG00000026674.9 ENSMUSG00000026674 ENSMUST00000194619 Ddr2 protein_coding Interval_60541 chr15 74749148 74749844 + 0 NA exon (ENSMUSG00000022594.14, exon 4 of 4) protein_coding-exon (ENSMUSG00000022594.14, exon 4 of 4) -2803 ENSMUSG00000075605.3 ENSMUSG00000075605 ENSMUST00000057932 Slurp2 protein_coding Interval_107548 chr3 108423642 108424765 + 0 NA TTS (ENSMUSG00000068739.13) protein_coding-TTS (ENSMUSG00000068739.13) -17127 ENSMUSG00000089188.1 ENSMUSG00000089188 ENSMUST00000158563 Gm22942 snoRNA Interval_75540 chr17 67902888 67903134 + 0 NA intron (ENSMUSG00000024043.13, intron 1 of 17) protein_coding-intron (ENSMUSG00000024043.13, intron 1 of 17) -29963 ENSMUSG00000024043.13 ENSMUSG00000024043 ENSMUST00000170581 Arhgap28 protein_coding Interval_64984 chr16 17686136 17686331 + 0 NA intron (ENSMUSG00000012114.17, intron 2 of 3) protein_coding-intron (ENSMUSG00000012114.17, intron 2 of 17) -16694 ENSMUSG00000116561.1 ENSMUSG00000116561 ENSMUST00000231388 Gm18335 processed_pseudogene Interval_134099 chr6 19941831 19942353 + 0 NA Intergenic Intergenic 154039 ENSMUSG00000107067.1 ENSMUSG00000107067 ENSMUST00000201774 Gm42581 processed_pseudogene Interval_121638 chr5 4107151 4107447 + 0 NA Intergenic Intergenic -2878 ENSMUSG00000001467.5 ENSMUSG00000001467 ENSMUST00000199909 Cyp51 protein_coding Interval_85520 chr19 27903624 27905329 + 0 NA intron (ENSMUSG00000040929.17, intron 1 of 16) protein_coding-intron (ENSMUSG00000040929.17, intron 1 of 15) 46418 ENSMUSG00000092617.1 ENSMUSG00000092617 ENSMUST00000077493 Gm8412 processed_pseudogene Interval_93613 chr2 74964222 74965999 + 0 NA Intergenic Intergenic -29596 ENSMUSG00000084574.1 ENSMUSG00000084574 ENSMUST00000122625 n-R5s198 rRNA Interval_160932 chr8 115270548 115271070 + 0 NA intron (ENSMUSG00000004637.15, intron 2 of 2) protein_coding-intron (ENSMUSG00000004637.15, intron 8 of 8) -217896 ENSMUSG00000088428.1 ENSMUSG00000088428 ENSMUST00000157803 Gm22556 rRNA Interval_122577 chr5 23874483 23874836 + 0 NA exon (ENSMUSG00000118576.1, exon 2 of 4) unprocessed_pseudogene-exon (ENSMUSG00000118576.1, exon 2 of 4) 1784 ENSMUSG00000118576.1 ENSMUSG00000118576 ENSMUST00000239129 AC117663.1 unprocessed_pseudogene Interval_148481 chr7 81623916 81624270 + 0 NA exon (ENSMUSG00000025813.14, exon 4 of 4) protein_coding-exon (ENSMUSG00000025813.14, exon 4 of 4) 13984 ENSMUSG00000109194.1 ENSMUSG00000109194 ENSMUST00000207526 Gm44570 antisense Interval_86266 chr19 38259332 38259820 + 0 NA Intergenic Intergenic -5001 ENSMUSG00000067242.11 ENSMUSG00000067242 ENSMUST00000130039 Lgi1 protein_coding Interval_48742 chr13 102676838 102677359 + 0 NA Intergenic Intergenic -16513 ENSMUSG00000021624.9 ENSMUSG00000021624 ENSMUST00000172138 Cd180 protein_coding Interval_29669 chr11 85924073 85925564 + 0 NA Intergenic Intergenic -25677 ENSMUSG00000081632.1 ENSMUSG00000081632 ENSMUST00000118790 Gm11443 processed_pseudogene Interval_2010 chr1 35878308 35878628 + 0 NA Intergenic Intergenic -1377 ENSMUSG00000102531.1 ENSMUSG00000102531 ENSMUST00000194261 1110002O04Rik lincRNA Interval_20475 chr10 117816627 117817141 + 0 NA intron (ENSMUSG00000052681.8, intron 2 of 3) protein_coding-intron (ENSMUSG00000052681.8, intron 7 of 7) 1656 ENSMUSG00000052681.8 ENSMUSG00000052681 ENSMUST00000220214 Rap1b protein_coding Interval_400 chr1 4899178 4899515 + 0 NA Intergenic Intergenic 7515 ENSMUSG00000103280.1 ENSMUSG00000103280 ENSMUST00000194052 Gm37277 TEC Interval_60936 chr15 78001101 78001920 + 0 NA intron (ENSMUSG00000019146.2, intron 2 of 3) protein_coding-intron (ENSMUSG00000019146.2, intron 2 of 3) -37738 ENSMUSG00000016554.9 ENSMUSG00000016554 ENSMUST00000229713 Eif3d protein_coding Interval_114247 chr4 70021835 70022572 + 0 NA Intergenic Intergenic -24954 ENSMUSG00000082368.1 ENSMUSG00000082368 ENSMUST00000118903 Gm11225 processed_pseudogene Interval_57801 chr15 20644468 20645560 + 0 NA intron (ENSMUSG00000040452.9, intron 2 of 3) protein_coding-intron (ENSMUSG00000040452.9, intron 2 of 3) 21736 ENSMUSG00000047565.5 ENSMUSG00000047565 ENSMUST00000052910 Acot10 protein_coding Interval_142430 chr6 142164610 142164814 + 0 NA intron (ENSMUSG00000092500.1, intron 1 of 2) protein_coding-intron (ENSMUSG00000079262.3, intron 1 of 14) 3219 ENSMUSG00000092500.1 ENSMUSG00000092500 ENSMUST00000173695 Gm20400 antisense Interval_21412 chr10 128445864 128446794 + 0 NA Intergenic Intergenic 10415 ENSMUSG00000088151.1 ENSMUSG00000088151 ENSMUST00000157526 Gm26347 scaRNA Interval_166636 chr9 61457563 61457955 + 0 NA Intergenic Intergenic 15168 ENSMUSG00000111033.1 ENSMUSG00000111033 ENSMUST00000214224 Gm34322 lincRNA Interval_21966 chr11 5463789 5464252 + 0 NA Intergenic Intergenic 31426 ENSMUSG00000085232.3 ENSMUSG00000085232 ENSMUST00000145746 Gm11962 processed_pseudogene Interval_85138 chr19 23107215 23108195 + 0 NA Intergenic Intergenic -27195 ENSMUSG00000044387.5 ENSMUSG00000044387 ENSMUST00000142712 2410080I02Rik lincRNA Interval_50223 chr14 10534363 10535490 + 0 NA intron (ENSMUSG00000060579.13, intron 3 of 4) protein_coding-intron (ENSMUSG00000060579.13, intron 4 of 9) 56252 ENSMUSG00000065328.1 ENSMUSG00000065328 ENSMUST00000083394 Gm22053 snoRNA Interval_144925 chr7 28943504 28943972 + 0 NA promoter-TSS (ENSMUSG00000109314.1) sense_intronic-promoter-TSS (ENSMUSG00000109314.1) -210 ENSMUSG00000109314.1 ENSMUSG00000109314 ENSMUST00000208229 Gm44699 sense_intronic Interval_99452 chr2 161252536 161253313 + 0 NA Intergenic Intergenic 2533 ENSMUSG00000081099.2 ENSMUSG00000081099 ENSMUST00000121506 Gm5270 processed_pseudogene Interval_102654 chr3 28964077 28964283 + 0 NA Intergenic Intergenic 71563 ENSMUSG00000074655.1 ENSMUSG00000074655 ENSMUST00000099170 Gm1527 protein_coding Interval_150713 chr7 113673548 113674466 + 0 NA Intergenic Intergenic -6991 ENSMUSG00000089467.1 ENSMUSG00000089467 ENSMUST00000158842 Gm23700 miRNA Interval_94597 chr2 92514876 92515582 + 0 NA intron (ENSMUSG00000085261.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000085261.1, intron 1 of 1) 25751 ENSMUSG00000085293.2 ENSMUSG00000085293 ENSMUST00000142249 Gm13817 lincRNA Interval_55431 chr14 87170463 87171989 + 0 NA Intergenic Intergenic 11200 ENSMUSG00000115438.1 ENSMUSG00000115438 ENSMUST00000228953 Gm49193 transcribed_processed_pseudogene Interval_70160 chr17 5887164 5887647 + 0 NA intron (ENSMUSG00000002365.10, intron 3 of 3) protein_coding-intron (ENSMUSG00000002365.10, intron 2 of 17) 46053 ENSMUSG00000002365.10 ENSMUSG00000002365 ENSMUST00000231803 Snx9 protein_coding Interval_134658 chr6 30183355 30184148 + 0 NA Intergenic Intergenic 10858 ENSMUSG00000103108.2 ENSMUSG00000103108 ENSMUST00000194541 Rncr4 lincRNA Interval_96936 chr2 129687723 129688608 + 0 NA TTS (ENSMUSG00000027400.11) protein_coding-TTS (ENSMUSG00000027400.11) 11679 ENSMUSG00000027400.11 ENSMUSG00000027400 ENSMUST00000152113 Pdyn protein_coding Interval_16490 chr10 63165792 63166624 + 0 NA intron (ENSMUSG00000020067.8, intron 4 of 19) protein_coding-intron (ENSMUSG00000020067.8, intron 4 of 19) -43524 ENSMUSG00000020067.8 ENSMUSG00000020067 ENSMUST00000218978 Mypn protein_coding Interval_18836 chr10 91179814 91182493 + 0 NA promoter-TSS (ENSMUSG00000019961.17) protein_coding-promoter-TSS (ENSMUSG00000019961.17) -10691 ENSMUSG00000019961.17 ENSMUSG00000019961 ENSMUST00000213270 Tmpo protein_coding Interval_7523 chr1 131982797 131983361 + 0 NA TTS (ENSMUSG00000026435.15) protein_coding-TTS (ENSMUSG00000026435.15) 6360 ENSMUSG00000026435.15 ENSMUSG00000026435 ENSMUST00000185387 Slc45a3 protein_coding Interval_55049 chr14 77508269 77508476 + 0 NA intron (ENSMUSG00000022012.9, intron 6 of 6) protein_coding-intron (ENSMUSG00000022012.9, intron 7 of 18) -6932 ENSMUSG00000067973.11 ENSMUSG00000067973 ENSMUST00000163416 Gm6994 antisense Interval_119456 chr4 137724749 137725008 + 0 NA promoter-TSS (ENSMUSG00000041351.16) protein_coding-promoter-TSS (ENSMUSG00000041351.16) -18272 ENSMUSG00000087476.1 ENSMUSG00000087476 ENSMUST00000135358 Rap1gapos antisense Interval_106937 chr3 102055183 102056200 + 0 NA Intergenic Intergenic -12359 ENSMUSG00000104930.1 ENSMUSG00000104930 ENSMUST00000199964 Gm43243 processed_pseudogene Interval_106464 chr3 96532743 96532960 + 0 NA Intergenic Intergenic 7679 ENSMUSG00000038403.10 ENSMUSG00000038403 ENSMUST00000049208 Hjv protein_coding Interval_107463 chr3 107868681 107869167 + 0 NA promoter-TSS (ENSMUSG00000105944.1) processed_pseudogene-promoter-TSS (ENSMUSG00000105944.1) -281 ENSMUSG00000105944.1 ENSMUSG00000105944 ENSMUST00000196916 Gm5075 processed_pseudogene Interval_170441 chr9 108007853 108008566 + 0 NA intron (ENSMUSG00000032594.11, intron 1 of 2) protein_coding-intron (ENSMUSG00000032594.11, intron 1 of 5) 5575 ENSMUSG00000032594.11 ENSMUSG00000032594 ENSMUST00000176613 Ip6k1 protein_coding Interval_100832 chr2 172786401 172787956 + 0 NA Intergenic Intergenic 77163 ENSMUSG00000093160.1 ENSMUSG00000093160 ENSMUST00000175419 Gm22773 miRNA Interval_69085 chr16 90521475 90524072 + 0 NA Intergenic Intergenic 27836 ENSMUSG00000116753.1 ENSMUSG00000116753 ENSMUST00000232652 Gm36001 lincRNA Interval_31548 chr11 101301007 101302631 + 0 NA promoter-TSS (ENSMUSG00000035086.13) protein_coding-promoter-TSS (ENSMUSG00000035086.13) 432 ENSMUSG00000035086.13 ENSMUSG00000035086 ENSMUST00000137614 Becn1 protein_coding Interval_167177 chr9 65909287 65910711 + 0 NA intron (ENSMUSG00000032384.16, intron 1 of 12) protein_coding-intron (ENSMUSG00000032384.16, intron 1 of 13) -1205 ENSMUSG00000032386.15 ENSMUSG00000032386 ENSMUST00000139346 Trip4 protein_coding Interval_51837 chr14 32634239 32634904 + 0 NA intron (ENSMUSG00000041730.14, intron 5 of 5) protein_coding-intron (ENSMUSG00000041730.14, intron 5 of 6) 34613 ENSMUSG00000041730.14 ENSMUSG00000041730 ENSMUST00000228878 Prrxl1 protein_coding Interval_73088 chr17 34716219 34716974 + 0 NA exon (ENSMUSG00000033327.18, exon 30 of 41) protein_coding-exon (ENSMUSG00000033327.18, exon 30 of 41) 5656 ENSMUSG00000092471.1 ENSMUSG00000092471 ENSMUST00000172970 Cyp21a2-ps unprocessed_pseudogene Interval_39451 chr12 87487785 87489528 + 0 NA Intergenic Intergenic 3513 ENSMUSG00000113372.1 ENSMUSG00000113372 ENSMUST00000220966 Gm18624 processed_pseudogene Interval_22002 chr11 5707025 5708236 + 0 NA promoter-TSS (ENSMUSG00000020477.10) protein_coding-promoter-TSS (ENSMUSG00000020477.10) 57 ENSMUSG00000020477.10 ENSMUSG00000020477 ENSMUST00000123697 Mrps24 protein_coding Interval_44031 chr13 40135788 40136647 + 0 NA intron (ENSMUSG00000047094.9, intron 11 of 17) protein_coding-intron (ENSMUSG00000047094.9, intron 12 of 18) 151794 ENSMUSG00000047094.9 ENSMUSG00000047094 ENSMUST00000224813 Ofcc1 protein_coding Interval_1989 chr1 35697576 35698572 + 0 NA Intergenic Intergenic -46777 ENSMUSG00000104417.1 ENSMUSG00000104417 ENSMUST00000195168 Gm37068 lincRNA Interval_119748 chr4 139646943 139647381 + 0 NA intron (ENSMUSG00000094439.1, intron 24 of 29) protein_coding-intron (ENSMUSG00000028737.15, intron 14 of 14) 3120 ENSMUSG00000098569.1 ENSMUSG00000098569 ENSMUST00000183787 Mir7020 miRNA Interval_130889 chr5 133589180 133589691 + 0 NA intron (ENSMUSG00000105227.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000105227.1, intron 1 of 1) 8971 ENSMUSG00000105227.1 ENSMUSG00000105227 ENSMUST00000196125 Gm36667 lincRNA Interval_32453 chr11 107629187 107630133 + 0 NA intron (ENSMUSG00000020721.16, intron 1 of 13) protein_coding-intron (ENSMUSG00000020721.16, intron 16 of 31) -8062 ENSMUSG00000098497.1 ENSMUSG00000098497 ENSMUST00000185044 Mir6932 miRNA Interval_66847 chr16 38109226 38110750 + 0 NA intron (ENSMUSG00000022812.14, intron 1 of 11) protein_coding-intron (ENSMUSG00000022812.14, intron 1 of 10) -48020 ENSMUSG00000095395.2 ENSMUSG00000095395 ENSMUST00000179548 Gm25617 snoRNA Interval_148650 chr7 83841607 83842312 + 0 NA Intergenic Intergenic -7360 ENSMUSG00000109248.1 ENSMUSG00000109248 ENSMUST00000208435 Gm44993 lincRNA Interval_132518 chr5 145679571 145679946 + 0 NA Intergenic Intergenic 40378 ENSMUSG00000075551.4 ENSMUSG00000075551 ENSMUST00000094111 Cyp3a41a protein_coding Interval_59841 chr15 59664973 59666578 + 0 NA Intergenic Intergenic 6338 ENSMUSG00000115010.1 ENSMUSG00000115010 ENSMUST00000227801 Gm20150 processed_pseudogene Interval_125688 chr5 73255407 73257216 + 0 NA intron (ENSMUSG00000070733.13, intron 1 of 11) protein_coding-intron (ENSMUSG00000070733.13, intron 1 of 62) -7118 ENSMUSG00000107087.1 ENSMUSG00000107087 ENSMUST00000201180 Gm34411 lincRNA Interval_58901 chr15 39840818 39841290 + 0 NA intron (ENSMUSG00000022304.13, intron 4 of 9) protein_coding-intron (ENSMUSG00000022304.13, intron 4 of 9) 44009 ENSMUSG00000087695.1 ENSMUSG00000087695 ENSMUST00000147378 Gm16291 antisense Interval_61844 chr15 84613674 84614527 + 0 NA Intergenic Intergenic -36983 ENSMUSG00000116409.1 ENSMUSG00000116409 ENSMUST00000229199 Gm34095 lincRNA Interval_6849 chr1 120085828 120086935 + 0 NA Intergenic Intergenic -12307 ENSMUSG00000050777.7 ENSMUSG00000050777 ENSMUST00000056089 Tmem37 protein_coding Interval_167437 chr9 69355310 69355674 + 0 NA intron (ENSMUSG00000086648.1, intron 2 of 2) protein_coding-intron (ENSMUSG00000032238.17, intron 3 of 10) 8755 ENSMUSG00000086648.1 ENSMUSG00000086648 ENSMUST00000152570 Gm15511 antisense Interval_13173 chr10 12805092 12805908 + 0 NA intron (ENSMUSG00000019820.11, intron 2 of 17) protein_coding-intron (ENSMUSG00000019820.11, intron 1 of 73) -11526 ENSMUSG00000088516.1 ENSMUSG00000088516 ENSMUST00000157891 Gm23044 snRNA Interval_169309 chr9 96296322 96296600 + 0 NA intron (ENSMUSG00000032411.15, intron 8 of 13) protein_coding-intron (ENSMUSG00000032411.15, intron 7 of 12) 8104 ENSMUSG00000032411.15 ENSMUSG00000032411 ENSMUST00000191133 Tfdp2 protein_coding Interval_75306 chr17 65801949 65802973 + 0 NA promoter-TSS (ENSMUSG00000061950.17) protein_coding-promoter-TSS (ENSMUSG00000061950.17) -26487 ENSMUSG00000061950.17 ENSMUSG00000061950 ENSMUST00000162703 Ppp4r1 protein_coding Interval_66127 chr16 31810487 31810800 + 0 NA intron (ENSMUSG00000022770.17, intron 12 of 24) protein_coding-intron (ENSMUSG00000022770.17, intron 12 of 24) 1968 ENSMUSG00000116778.1 ENSMUSG00000116778 ENSMUST00000231752 Gm49713 processed_pseudogene Interval_9979 chr1 164502972 164504278 + 0 NA intron (ENSMUSG00000097281.2, intron 1 of 2) lincRNA-intron (ENSMUSG00000097281.2, intron 1 of 2) 316 ENSMUSG00000097281.2 ENSMUSG00000097281 ENSMUST00000181831 Gm26685 lincRNA Interval_162934 chr9 13543620 13543848 + 0 NA intron (ENSMUSG00000031925.17, intron 1 of 4) protein_coding-intron (ENSMUSG00000031925.17, intron 1 of 4) 23798 ENSMUSG00000111223.1 ENSMUSG00000111223 ENSMUST00000213741 Gm47089 TEC Interval_40492 chr12 105199833 105200460 + 0 NA Intergenic Intergenic -1811 ENSMUSG00000079007.4 ENSMUSG00000079007 ENSMUST00000000718 Tcl1b4 protein_coding Interval_153877 chr8 10442551 10442853 + 0 NA intron (ENSMUSG00000039057.11, intron 20 of 34) protein_coding-intron (ENSMUSG00000039057.11, intron 19 of 34) 193414 ENSMUSG00000039057.11 ENSMUSG00000039057 ENSMUST00000042103 Myo16 protein_coding Interval_48003 chr13 95020453 95020755 + 0 NA intron (ENSMUSG00000042015.17, intron 13 of 13) protein_coding-intron (ENSMUSG00000042015.17, intron 12 of 12) 3020 ENSMUSG00000042015.17 ENSMUSG00000042015 ENSMUST00000223422 Wdr41 protein_coding Interval_17258 chr10 75364816 75365609 + 0 NA intron (ENSMUSG00000033416.15, intron 6 of 8) protein_coding-intron (ENSMUSG00000033416.15, intron 6 of 8) 20740 ENSMUSG00000112471.1 ENSMUSG00000112471 ENSMUST00000218467 Gm5779 transcribed_processed_pseudogene Interval_59544 chr15 55173865 55174669 + 0 NA intron (ENSMUSG00000022419.16, intron 3 of 4) protein_coding-intron (ENSMUSG00000022419.16, intron 3 of 8) 40814 ENSMUSG00000022419.16 ENSMUSG00000022419 ENSMUST00000226687 Deptor protein_coding Interval_65757 chr16 27413185 27414090 + 0 NA intron (ENSMUSG00000038127.15, intron 4 of 11) protein_coding-intron (ENSMUSG00000038127.15, intron 4 of 8) 24768 ENSMUSG00000038127.15 ENSMUSG00000038127 ENSMUST00000149077 Ccdc50 protein_coding Interval_102371 chr3 22308926 22309217 + 0 NA Intergenic Intergenic -11241 ENSMUSG00000102987.1 ENSMUSG00000102987 ENSMUST00000194390 Gm38324 lincRNA Interval_132933 chr5 148811808 148812448 + 0 NA Intergenic Intergenic -8639 ENSMUSG00000087647.2 ENSMUSG00000087647 ENSMUST00000136919 Gm15407 lincRNA Interval_93 GL456221.1 112365 113070 + 0 NA NA NA NA NA Interval_99850 chr2 165307293 165308892 + 0 NA TTS (ENSMUSG00000017670.16) protein_coding-TTS (ENSMUSG00000017670.16) 3550 ENSMUSG00000017670.16 ENSMUSG00000017670 ENSMUST00000128690 Elmo2 protein_coding Interval_8583 chr1 143497438 143498086 + 0 NA Intergenic Intergenic -142902 ENSMUSG00000033849.3 ENSMUSG00000033849 ENSMUST00000038252 B3galt2 protein_coding Interval_40761 chr12 108217499 108218150 + 0 NA intron (ENSMUSG00000084883.2, intron 2 of 6) protein_coding-intron (ENSMUSG00000084883.2, intron 2 of 6) 18739 ENSMUSG00000021258.10 ENSMUSG00000021258 ENSMUST00000223363 Ccnk protein_coding Interval_104597 chr3 68637735 68638479 + 0 NA Intergenic Intergenic -55914 ENSMUSG00000027776.12 ENSMUSG00000027776 ENSMUST00000195517 Il12a protein_coding Interval_72772 chr17 32067751 32067963 + 0 NA Intergenic Intergenic 22398 ENSMUSG00000002791.17 ENSMUSG00000002791 ENSMUST00000235497 Pdxk-ps transcribed_unprocessed_pseudogene Interval_135880 chr6 48199943 48200374 + 0 NA Intergenic Intergenic -40878 ENSMUSG00000097434.2 ENSMUSG00000097434 ENSMUST00000180741 Gm16630 lincRNA Interval_8356 chr1 137878481 137879270 + 0 NA Intergenic Intergenic -19720 ENSMUSG00000098243.3 ENSMUSG00000098243 ENSMUST00000182127 Gm4258 processed_transcript Interval_140539 chr6 119395492 119397392 + 0 NA intron (ENSMUSG00000030168.13, intron 1 of 5) protein_coding-intron (ENSMUSG00000030168.13, intron 1 of 7) 21033 ENSMUSG00000030168.13 ENSMUSG00000030168 ENSMUST00000189710 Adipor2 protein_coding Interval_80886 chr18 49916569 49917362 + 0 NA intron (ENSMUSG00000037416.13, intron 6 of 10) protein_coding-intron (ENSMUSG00000037416.13, intron 29 of 42) -5748 ENSMUSG00000037416.13 ENSMUSG00000037416 ENSMUST00000181042 Dmxl1 protein_coding Interval_6217 chr1 102314875 102315191 + 0 NA Intergenic Intergenic 98988 ENSMUSG00000088510.1 ENSMUSG00000088510 ENSMUST00000157885 Gm23036 snoRNA Interval_58309 chr15 32205180 32205878 + 0 NA Intergenic Intergenic -20856 ENSMUSG00000107924.1 ENSMUSG00000107924 ENSMUST00000203902 4930518I17Rik lincRNA Interval_146409 chr7 45741643 45742746 + 0 NA exon (ENSMUSG00000003271.17, exon 2 of 7) protein_coding-exon (ENSMUSG00000003271.17, exon 2 of 7) 145 ENSMUSG00000109602.1 ENSMUSG00000109602 ENSMUST00000211176 Gm31597 antisense Interval_91274 chr2 37295952 37296423 + 0 NA Intergenic Intergenic 14136 ENSMUSG00000064626.1 ENSMUSG00000064626 ENSMUST00000082692 Gm22306 snRNA Interval_158838 chr8 87069647 87070435 + 0 NA Intergenic Intergenic -17794 ENSMUSG00000110349.1 ENSMUSG00000110349 ENSMUST00000209794 Gm18602 processed_pseudogene Interval_107152 chr3 103967750 103969006 + 0 NA promoter-TSS (ENSMUSG00000058388.14) protein_coding-promoter-TSS (ENSMUSG00000058388.14) 203 ENSMUSG00000089998.2 ENSMUSG00000089998 ENSMUST00000160110 Phtf1os antisense Interval_77918 chr18 5443260 5443506 + 0 NA Intergenic Intergenic -72901 ENSMUSG00000117617.1 ENSMUSG00000117617 ENSMUST00000234572 Gm50065 lincRNA Interval_39282 chr12 86450819 86452075 + 0 NA intron (ENSMUSG00000021255.17, intron 1 of 6) protein_coding-intron (ENSMUSG00000021255.17, intron 1 of 6) -18670 ENSMUSG00000021255.17 ENSMUSG00000021255 ENSMUST00000136464 Esrrb protein_coding Interval_161003 chr8 116818832 116819042 + 0 NA Intergenic Intergenic -53458 ENSMUSG00000074072.2 ENSMUSG00000074072 ENSMUST00000098379 Gm10620 pseudogene Interval_154870 chr8 24512059 24512612 + 0 NA Intergenic Intergenic 5905 ENSMUSG00000109237.1 ENSMUSG00000109237 ENSMUST00000208727 9130214F15Rik TEC Interval_43694 chr13 35119617 35120030 + 0 NA Intergenic Intergenic 41334 ENSMUSG00000113738.1 ENSMUSG00000113738 ENSMUST00000223077 Gm40910 lincRNA Interval_22489 chr11 11035705 11036095 + 0 NA Intergenic Intergenic -80585 ENSMUSG00000050830.17 ENSMUSG00000050830 ENSMUST00000154155 Vwc2 protein_coding Interval_91213 chr2 35978761 35980121 + 0 NA exon (ENSMUSG00000026885.13, exon 1 of 10) protein_coding-exon (ENSMUSG00000026885.13, exon 1 of 10) -27027 ENSMUSG00000026885.13 ENSMUSG00000026885 ENSMUST00000162172 Ttll11 protein_coding Interval_60093 chr15 65354662 65355059 + 0 NA Intergenic Intergenic -154298 ENSMUSG00000115066.1 ENSMUSG00000115066 ENSMUST00000227626 Gm49242 processed_pseudogene Interval_110069 chr3 152951069 152951523 + 0 NA intron (ENSMUSG00000039047.17, intron 14 of 14) protein_coding-intron (ENSMUSG00000039037.5, intron 2 of 4) 7983 ENSMUSG00000090163.1 ENSMUSG00000090163 ENSMUST00000160432 Gm16231 antisense Interval_96871 chr2 129156663 129156843 + 0 NA Intergenic Intergenic -11947 ENSMUSG00000082274.1 ENSMUSG00000082274 ENSMUST00000120625 Gm14026 processed_pseudogene Interval_78664 chr18 16614517 16615339 + 0 NA intron (ENSMUSG00000024304.14, intron 13 of 14) protein_coding-intron (ENSMUSG00000024304.14, intron 14 of 15) -113805 ENSMUSG00000085575.1 ENSMUSG00000085575 ENSMUST00000149095 Gm15485 antisense Interval_158515 chr8 84191666 84192837 + 0 NA TTS (ENSMUSG00000097120.1) lincRNA-TTS (ENSMUSG00000097120.1) 5416 ENSMUSG00000097120.1 ENSMUSG00000097120 ENSMUST00000181282 Gm26887 lincRNA Interval_1233 chr1 17729509 17729864 + 0 NA intron (ENSMUSG00000025776.13, intron 3 of 4) protein_coding-intron (ENSMUSG00000025776.13, intron 2 of 14) -2402 ENSMUSG00000085125.7 ENSMUSG00000085125 ENSMUST00000149914 Gm16070 antisense Interval_117196 chr4 120486987 120487269 + 0 NA intron (ENSMUSG00000000085.16, intron 8 of 16) protein_coding-intron (ENSMUSG00000000085.16, intron 9 of 16) -45103 ENSMUSG00000047518.3 ENSMUSG00000047518 ENSMUST00000062990 Slfnl1 protein_coding Interval_27761 chr11 69833857 69834478 + 0 NA promoter-TSS (ENSMUSG00000051790.15) protein_coding-promoter-TSS (ENSMUSG00000051790.15) -4388 ENSMUSG00000070394.10 ENSMUSG00000070394 ENSMUST00000128281 Tmem256 protein_coding Interval_123524 chr5 33203353 33204192 + 0 NA intron (ENSMUSG00000037379.7, intron 2 of 3) protein_coding-intron (ENSMUSG00000037379.7, intron 2 of 3) 14423 ENSMUSG00000037379.7 ENSMUSG00000037379 ENSMUST00000201475 Spon2 protein_coding Interval_157965 chr8 77378195 77379781 + 0 NA intron (ENSMUSG00000037148.8, intron 12 of 21) protein_coding-intron (ENSMUSG00000037148.8, intron 13 of 22) -6472 ENSMUSG00000109873.1 ENSMUSG00000109873 ENSMUST00000209499 Gm45407 TEC Interval_3745 chr1 62729136 62729590 + 0 NA intron (ENSMUSG00000025969.15, intron 2 of 2) protein_coding-intron (ENSMUSG00000025969.15, intron 2 of 15) -11290 ENSMUSG00000100811.1 ENSMUSG00000100811 ENSMUST00000189205 Gm29083 antisense Interval_7888 chr1 134391332 134391992 + 0 NA TTS (ENSMUSG00000050526.5) protein_coding-TTS (ENSMUSG00000050526.5) 5722 ENSMUSG00000050526.5 ENSMUSG00000050526 ENSMUST00000162187 Mgat4f protein_coding Interval_139064 chr6 94699154 94700894 + 0 NA exon (ENSMUSG00000030029.14, exon 1 of 20) protein_coding-exon (ENSMUSG00000030029.14, exon 1 of 20) 134 ENSMUSG00000030029.14 ENSMUSG00000030029 ENSMUST00000124165 Lrig1 protein_coding Interval_72698 chr17 31614629 31615035 + 0 NA intron (ENSMUSG00000024039.15, intron 15 of 16) protein_coding-intron (ENSMUSG00000024039.15, intron 15 of 16) 18332 ENSMUSG00000024039.15 ENSMUSG00000024039 ENSMUST00000236909 Cbs protein_coding Interval_157849 chr8 74930080 74931388 + 0 NA Intergenic Intergenic 57194 ENSMUSG00000031621.9 ENSMUSG00000031621 ENSMUST00000174427 Isx protein_coding Interval_38994 chr12 84355354 84356571 + 0 NA exon (ENSMUSG00000021234.9, exon 3 of 8) protein_coding-exon (ENSMUSG00000021234.9, exon 3 of 8) 5830 ENSMUSG00000021234.9 ENSMUSG00000021234 ENSMUST00000126752 Fam161b protein_coding Interval_28684 chr11 77744050 77744406 + 0 NA Intergenic Intergenic -2813 ENSMUSG00000081924.1 ENSMUSG00000081924 ENSMUST00000117231 Gm11191 processed_pseudogene Interval_85095 chr19 22765101 22766056 + 0 NA intron (ENSMUSG00000052387.16, intron 7 of 7) protein_coding-intron (ENSMUSG00000052387.16, intron 6 of 26) 14973 ENSMUSG00000065507.3 ENSMUSG00000065507 ENSMUST00000083573 Mir204 miRNA Interval_90302 chr2 29668075 29668318 + 0 NA intron (ENSMUSG00000039844.20, intron 1 of 23) protein_coding-intron (ENSMUSG00000039844.20, intron 1 of 25) 24381 ENSMUSG00000039844.20 ENSMUSG00000039844 ENSMUST00000123953 Rapgef1 protein_coding Interval_64902 chr16 17088532 17089005 + 0 NA exon (ENSMUSG00000022771.17, exon 20 of 21) protein_coding-exon (ENSMUSG00000022771.17, exon 20 of 21) -4047 ENSMUSG00000116645.1 ENSMUSG00000116645 ENSMUST00000232323 Gm49584 antisense Interval_140752 chr6 121064027 121065048 + 0 NA promoter-TSS (ENSMUSG00000097011.2) processed_transcript-promoter-TSS (ENSMUSG00000097011.2) -59 ENSMUSG00000097011.2 ENSMUSG00000097011 ENSMUST00000203697 Gm4651 processed_transcript Interval_82241 chr18 69536834 69538271 + 0 NA intron (ENSMUSG00000053477.17, intron 1 of 5) protein_coding-intron (ENSMUSG00000053477.17, intron 7 of 20) -14411 ENSMUSG00000088659.1 ENSMUSG00000088659 ENSMUST00000158034 Gm24845 rRNA Interval_75067 chr17 62837595 62837984 + 0 NA intron (ENSMUSG00000048915.12, intron 1 of 3) protein_coding-intron (ENSMUSG00000048915.12, intron 1 of 4) 43355 ENSMUSG00000048915.12 ENSMUSG00000048915 ENSMUST00000078839 Efna5 protein_coding Interval_20838 chr10 121419751 121420585 + 0 NA intron (ENSMUSG00000025795.8, intron 1 of 4) protein_coding-intron (ENSMUSG00000025795.8, intron 1 of 4) 19455 ENSMUSG00000112209.1 ENSMUSG00000112209 ENSMUST00000218038 Gm18730 processed_pseudogene Interval_128476 chr5 113550299 113551682 + 0 NA exon (ENSMUSG00000063430.9, exon 2 of 9) protein_coding-exon (ENSMUSG00000063430.9, exon 2 of 9) -27798 ENSMUSG00000063430.9 ENSMUSG00000063430 ENSMUST00000198673 Wscd2 protein_coding Interval_54584 chr14 70806449 70806863 + 0 NA Intergenic Intergenic 30777 ENSMUSG00000022102.13 ENSMUSG00000022102 ENSMUST00000164691 Dok2 protein_coding Interval_164855 chr9 42463492 42464128 + 0 NA intron (ENSMUSG00000037287.15, intron 1 of 2) protein_coding-intron (ENSMUSG00000037287.15, intron 1 of 7) 8429 ENSMUSG00000037287.15 ENSMUSG00000037287 ENSMUST00000213428 Tbcel protein_coding Interval_112877 chr4 45730817 45731499 + 0 NA Intergenic Intergenic 15989 ENSMUSG00000085305.1 ENSMUSG00000085305 ENSMUST00000124989 Gm12410 lincRNA Interval_133700 chr6 8935458 8935874 + 0 NA Intergenic Intergenic -12765 ENSMUSG00000046178.3 ENSMUSG00000046178 ENSMUST00000060369 Nxph1 protein_coding Interval_72356 chr17 29393417 29393799 + 0 NA Intergenic Intergenic 20257 ENSMUSG00000024013.15 ENSMUSG00000024013 ENSMUST00000144616 Fgd2 protein_coding Interval_33074 chr11 114200956 114201372 + 0 NA Intergenic Intergenic 2906 ENSMUSG00000078600.1 ENSMUSG00000078600 ENSMUST00000106604 1700092K14Rik processed_transcript Interval_27819 chr11 70201385 70202405 + 0 NA Intergenic Intergenic -12015 ENSMUSG00000040938.16 ENSMUSG00000040938 ENSMUST00000149880 Slc16a11 protein_coding Interval_73821 chr17 44129451 44129681 + 0 NA Intergenic Intergenic -5202 ENSMUSG00000023959.10 ENSMUSG00000023959 ENSMUST00000233193 Clic5 protein_coding Interval_158811 chr8 86817267 86817696 + 0 NA intron (ENSMUSG00000031652.11, intron 1 of 1) protein_coding-intron (ENSMUSG00000031652.11, intron 1 of 1) 34939 ENSMUSG00000031652.11 ENSMUSG00000031652 ENSMUST00000210029 N4bp1 protein_coding Interval_166929 chr9 63989062 63989906 + 0 NA exon (ENSMUSG00000036867.7, exon 4 of 5) protein_coding-exon (ENSMUSG00000036867.7, exon 4 of 5) 32548 ENSMUSG00000036867.7 ENSMUSG00000036867 ENSMUST00000179458 Smad6 protein_coding Interval_139677 chr6 106764758 106765108 + 0 NA Intergenic Intergenic -4353 ENSMUSG00000013736.16 ENSMUSG00000013736 ENSMUST00000204782 Trnt1 protein_coding Interval_99215 chr2 158132581 158132895 + 0 NA TTS (ENSMUSG00000027651.16) protein_coding-TTS (ENSMUSG00000027651.16) 13655 ENSMUSG00000037820.15 ENSMUSG00000037820 ENSMUST00000152690 Tgm2 protein_coding Interval_14333 chr10 30963964 30964182 + 0 NA Intergenic Intergenic -21588 ENSMUSG00000094008.1 ENSMUSG00000094008 ENSMUST00000178825 Gm24168 snRNA Interval_41855 chr13 3565203 3565711 + 0 NA TTS (ENSMUSG00000033799.10) protein_coding-TTS (ENSMUSG00000033799.10) 3072 ENSMUSG00000113894.1 ENSMUSG00000113894 ENSMUST00000223046 Gm48838 TEC Interval_152579 chr7 134771023 134772192 + 0 NA intron (ENSMUSG00000058325.6, intron 17 of 20) protein_coding-intron (ENSMUSG00000058325.6, intron 17 of 51) 100920 ENSMUSG00000058325.6 ENSMUSG00000058325 ENSMUST00000210121 Dock1 protein_coding Interval_507 chr1 6694715 6695071 + 0 NA intron (ENSMUSG00000033740.17, intron 2 of 22) protein_coding-intron (ENSMUSG00000033740.17, intron 2 of 22) -42682 ENSMUSG00000033740.17 ENSMUSG00000033740 ENSMUST00000130338 St18 protein_coding Interval_138229 chr6 86465282 86466912 + 0 NA intron (ENSMUSG00000046679.16, intron 9 of 11) protein_coding-intron (ENSMUSG00000046679.16, intron 9 of 9) 14733 ENSMUSG00000085589.7 ENSMUSG00000085589 ENSMUST00000154066 A430078I02Rik antisense Interval_161970 chr8 124176909 124177303 + 0 NA intron (ENSMUSG00000092329.1, intron 1 of 15) protein_coding-intron (ENSMUSG00000092329.1, intron 1 of 15) 17033 ENSMUSG00000110482.1 ENSMUSG00000110482 ENSMUST00000212467 Gm3889 processed_pseudogene Interval_76489 chr17 80559008 80561199 + 0 NA intron (ENSMUSG00000033966.8, intron 2 of 9) protein_coding-intron (ENSMUSG00000033966.8, intron 2 of 9) 6639 ENSMUSG00000117375.1 ENSMUSG00000117375 ENSMUST00000234757 Gm33373 antisense Interval_68008 chr16 63213238 63214123 + 0 NA intron (ENSMUSG00000116871.1, intron 2 of 2) lincRNA-intron (ENSMUSG00000116871.1, intron 2 of 2) 3762 ENSMUSG00000116871.1 ENSMUSG00000116871 ENSMUST00000231373 Gm33912 lincRNA Interval_139416 chr6 99978145 99978685 + 0 NA intron (ENSMUSG00000108151.1, intron 1 of 3) lincRNA-intron (ENSMUSG00000108151.1, intron 1 of 3) 12800 ENSMUSG00000108151.1 ENSMUSG00000108151 ENSMUST00000204791 Gm33201 lincRNA Interval_76046 chr17 74559781 74560400 + 0 NA promoter-TSS (ENSMUSG00000024073.16) protein_coding-promoter-TSS (ENSMUSG00000024073.16) -32446 ENSMUSG00000117358.1 ENSMUSG00000117358 ENSMUST00000234285 Gm31645 processed_transcript Interval_72050 chr17 27724468 27725908 + 0 NA intron (ENSMUSG00000024215.14, intron 1 of 6) protein_coding-intron (ENSMUSG00000024215.14, intron 1 of 5) -6839 ENSMUSG00000024215.14 ENSMUSG00000024215 ENSMUST00000138970 Spdef protein_coding Interval_100383 chr2 168734006 168735110 + 0 NA promoter-TSS (ENSMUSG00000027546.15) protein_coding-promoter-TSS (ENSMUSG00000027546.15) 7406 ENSMUSG00000027546.15 ENSMUSG00000027546 ENSMUST00000156555 Atp9a protein_coding Interval_136772 chr6 59471119 59471616 + 0 NA Intergenic Intergenic -45073 ENSMUSG00000045441.5 ENSMUSG00000045441 ENSMUST00000051065 Gprin3 protein_coding Interval_40680 chr12 107047033 107047740 + 0 NA Intergenic Intergenic 52287 ENSMUSG00000085120.1 ENSMUSG00000085120 ENSMUST00000143652 Gm16086 lincRNA Interval_146865 chr7 53950714 53952890 + 0 NA Intergenic Intergenic -44140 ENSMUSG00000109312.1 ENSMUSG00000109312 ENSMUST00000208501 Gm44682 TEC Interval_104757 chr3 70854531 70854847 + 0 NA Intergenic Intergenic 165597 ENSMUSG00000074877.3 ENSMUSG00000074877 ENSMUST00000099459 Gm10780 pseudogene Interval_38056 chr12 75386702 75387361 + 0 NA intron (ENSMUSG00000046768.13, intron 2 of 3) protein_coding-intron (ENSMUSG00000046768.13, intron 2 of 4) 29750 ENSMUSG00000048982.3 ENSMUSG00000048982 ENSMUST00000051079 Gphb5 protein_coding Interval_21416 chr10 128473516 128475019 + 0 NA promoter-TSS (ENSMUSG00000025369.15) protein_coding-promoter-TSS (ENSMUSG00000025369.15) 14611 ENSMUSG00000025369.15 ENSMUSG00000025369 ENSMUST00000217751 Smarcc2 protein_coding Interval_155483 chr8 33856075 33856430 + 0 NA intron (ENSMUSG00000031586.17, intron 4 of 5) protein_coding-intron (ENSMUSG00000031586.17, intron 4 of 7) 29495 ENSMUSG00000098166.1 ENSMUSG00000098166 ENSMUST00000182843 Gm26978 sense_intronic Interval_128813 chr5 115414237 115415836 + 0 NA intron (ENSMUSG00000087292.1, intron 2 of 2) lincRNA-intron (ENSMUSG00000087292.1, intron 2 of 2) 7464 ENSMUSG00000106887.1 ENSMUSG00000106887 ENSMUST00000201293 A930005G22Rik TEC Interval_30974 chr11 97534373 97535202 + 0 NA TTS (ENSMUSG00000038453.17) protein_coding-TTS (ENSMUSG00000038453.17) -12892 ENSMUSG00000087042.1 ENSMUSG00000087042 ENSMUST00000134289 Gm11611 sense_intronic Interval_96546 chr2 125577848 125578049 + 0 NA intron (ENSMUSG00000068394.4, intron 21 of 27) protein_coding-intron (ENSMUSG00000068394.4, intron 21 of 27) 47165 ENSMUSG00000068394.4 ENSMUSG00000068394 ENSMUST00000089776 Cep152 protein_coding Interval_15289 chr10 44120505 44121035 + 0 NA intron (ENSMUSG00000019866.15, intron 1 of 21) protein_coding-intron (ENSMUSG00000019866.15, intron 1 of 21) -32700 ENSMUSG00000111122.1 ENSMUSG00000111122 ENSMUST00000213468 Gm5949 processed_pseudogene Interval_168801 chr9 87182387 87182828 + 0 NA exon (ENSMUSG00000042761.14, exon 4 of 4) protein_coding-exon (ENSMUSG00000042761.14, exon 4 of 4) 6806 ENSMUSG00000102830.1 ENSMUSG00000102830 ENSMUST00000194991 Gm37012 TEC Interval_126346 chr5 86842346 86842642 + 0 NA Intergenic Intergenic 21012 ENSMUSG00000105309.1 ENSMUSG00000105309 ENSMUST00000200382 Gm21461 unprocessed_pseudogene Interval_15970 chr10 59755491 59756298 + 0 NA intron (ENSMUSG00000020111.15, intron 5 of 12) protein_coding-intron (ENSMUSG00000020111.15, intron 5 of 13) 44360 ENSMUSG00000091184.1 ENSMUSG00000091184 ENSMUST00000168284 Gm17059 antisense Interval_107171 chr3 104288059 104288646 + 0 NA Intergenic Intergenic 78261 ENSMUSG00000022187.2 ENSMUSG00000022187 ENSMUST00000056145 Gm5546 lincRNA Interval_95173 chr2 104532366 104533539 + 0 NA Intergenic Intergenic -4485 ENSMUSG00000081447.1 ENSMUSG00000081447 ENSMUST00000117214 Gm13870 processed_pseudogene Interval_4109 chr1 68598071 68599161 + 0 NA intron (ENSMUSG00000062209.15, intron 2 of 18) protein_coding-intron (ENSMUSG00000062209.15, intron 2 of 27) -4930 ENSMUSG00000103307.1 ENSMUSG00000103307 ENSMUST00000195836 Gm19335 TEC Interval_146423 chr7 45799850 45801717 + 0 NA intron (ENSMUSG00000062044.16, intron 14 of 15) protein_coding-intron (ENSMUSG00000062044.16, intron 14 of 15) 10105 ENSMUSG00000003269.17 ENSMUSG00000003269 ENSMUST00000210898 Cyth2 protein_coding Interval_13388 chr10 17656548 17657117 + 0 NA intron (ENSMUSG00000112629.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000112629.1, intron 1 of 2) 1681 ENSMUSG00000112629.1 ENSMUSG00000112629 ENSMUST00000219966 Gm47771 lincRNA Interval_120992 chr4 152106994 152108440 + 0 NA promoter-TSS (ENSMUSG00000039713.17) protein_coding-promoter-TSS (ENSMUSG00000039713.17) -10254 ENSMUSG00000024793.14 ENSMUSG00000024793 ENSMUST00000153619 Tnfrsf25 protein_coding Interval_111230 chr4 15248852 15250653 + 0 NA Intergenic Intergenic -16079 ENSMUSG00000043252.8 ENSMUSG00000043252 ENSMUST00000062684 Tmem64 protein_coding Interval_120820 chr4 150823513 150824481 + 0 NA Intergenic Intergenic -1736 ENSMUSG00000085097.1 ENSMUSG00000085097 ENSMUST00000133196 Gm13049 lincRNA Interval_172846 chrX 51937916 51938259 + 0 NA Intergenic Intergenic 32960 ENSMUSG00000031118.8 ENSMUSG00000031118 ENSMUST00000114866 1700080O16Rik protein_coding Interval_38122 chr12 75786428 75786929 + 0 NA Intergenic Intergenic -31672 ENSMUSG00000063450.14 ENSMUSG00000063450 ENSMUST00000151286 Syne2 protein_coding Interval_132918 chr5 148740606 148742458 + 0 NA promoter-TSS (ENSMUSG00000086494.1) lincRNA-promoter-TSS (ENSMUSG00000086494.1) -308 ENSMUSG00000086494.1 ENSMUSG00000086494 ENSMUST00000150265 2210417A02Rik lincRNA Interval_58127 chr15 28189706 28190139 + 0 NA TTS (ENSMUSG00000115806.1) TEC-TTS (ENSMUSG00000115806.1) 2200 ENSMUSG00000115806.1 ENSMUSG00000115806 ENSMUST00000228611 Gm49234 TEC Interval_82560 chr18 75162171 75163048 + 0 NA intron (ENSMUSG00000035765.10, intron 13 of 16) protein_coding-intron (ENSMUSG00000035765.10, intron 13 of 16) 20205 ENSMUSG00000094153.2 ENSMUSG00000094153 ENSMUST00000179328 Gm8807 processed_pseudogene Interval_36160 chr12 37160606 37161732 + 0 NA intron (ENSMUSG00000036144.6, intron 1 of 2) protein_coding-intron (ENSMUSG00000036144.6, intron 1 of 2) 52629 ENSMUSG00000036144.6 ENSMUSG00000036144 ENSMUST00000041183 Meox2 protein_coding Interval_109397 chr3 141779847 141780085 + 0 NA intron (ENSMUSG00000059921.15, intron 7 of 15) protein_coding-intron (ENSMUSG00000059921.15, intron 7 of 16) 93413 ENSMUSG00000106071.1 ENSMUSG00000106071 ENSMUST00000199604 Gm43826 TEC Interval_37668 chr12 70987959 70988903 + 0 NA exon (ENSMUSG00000060073.9, exon 7 of 11) protein_coding-exon (ENSMUSG00000060073.9, exon 7 of 11) 13712 ENSMUSG00000060073.9 ENSMUSG00000060073 ENSMUST00000162898 Psma3 protein_coding Interval_98836 chr2 155436303 155436697 + 0 NA intron (ENSMUSG00000038369.14, intron 2 of 9) protein_coding-intron (ENSMUSG00000038369.14, intron 2 of 13) 24392 ENSMUSG00000080237.2 ENSMUSG00000080237 ENSMUST00000116491 Gm14239 processed_pseudogene Interval_40812 chr12 108563011 108563461 + 0 NA intron (ENSMUSG00000021262.15, intron 1 of 12) protein_coding-intron (ENSMUSG00000021262.15, intron 1 of 13) -7772 ENSMUSG00000097788.2 ENSMUSG00000097788 ENSMUST00000220796 Gm16596 antisense Interval_95176 chr2 104563265 104564574 + 0 NA intron (ENSMUSG00000086454.7, intron 2 of 2) processed_transcript-intron (ENSMUSG00000086454.7, intron 2 of 3) -3278 ENSMUSG00000086454.7 ENSMUSG00000086454 ENSMUST00000150581 Platr14 processed_transcript Interval_70264 chr17 7820970 7822011 + 0 NA intron (ENSMUSG00000071984.11, intron 1 of 22) protein_coding-intron (ENSMUSG00000071984.11, intron 1 of 3) 5812 ENSMUSG00000071984.11 ENSMUSG00000071984 ENSMUST00000167580 Fndc1 protein_coding Interval_154973 chr8 25405855 25406150 + 0 NA intron (ENSMUSG00000110172.1, intron 1 of 2) transcribed_processed_pseudogene-intron (ENSMUSG00000110172.1, intron 1 of 2) 6982 ENSMUSG00000110172.1 ENSMUSG00000110172 ENSMUST00000211376 Gm39147 transcribed_processed_pseudogene Interval_142418 chr6 141832453 141833144 + 0 NA intron (ENSMUSG00000030237.14, intron 7 of 16) protein_coding-intron (ENSMUSG00000030237.14, intron 4 of 13) 20884 ENSMUSG00000030237.14 ENSMUSG00000030237 ENSMUST00000204676 Slco1a4 protein_coding Interval_21305 chr10 127755962 127757205 + 0 NA Intergenic Intergenic -3138 ENSMUSG00000089789.1 ENSMUSG00000089789 ENSMUST00000073639 Rdh1 protein_coding Interval_11720 chr1 184874041 184874403 + 0 NA exon (ENSMUSG00000039349.5, exon 2 of 2) protein_coding-exon (ENSMUSG00000039349.5, exon 2 of 2) 8996 ENSMUSG00000039349.5 ENSMUSG00000039349 ENSMUST00000048308 C130074G19Rik protein_coding Interval_100705 chr2 171839612 171841209 + 0 NA Intergenic Intergenic 121721 ENSMUSG00000086823.7 ENSMUSG00000086823 ENSMUST00000125465 1700028P15Rik processed_transcript Interval_11501 chr1 182288458 182288782 + 0 NA intron (ENSMUSG00000100147.2, intron 1 of 2) lincRNA-intron (ENSMUSG00000100147.2, intron 1 of 2) 630 ENSMUSG00000100147.2 ENSMUSG00000100147 ENSMUST00000185216 1700047M11Rik lincRNA Interval_19905 chr10 111114256 111114969 + 0 NA Intergenic Intergenic -11239 ENSMUSG00000091086.2 ENSMUSG00000091086 ENSMUST00000171120 Rpl6l processed_pseudogene Interval_150819 chr7 114979316 114979795 + 0 NA intron (ENSMUSG00000108379.1, intron 4 of 4) lincRNA-intron (ENSMUSG00000108379.1, intron 4 of 4) 28281 ENSMUSG00000108379.1 ENSMUSG00000108379 ENSMUST00000205795 A730082K24Rik lincRNA Interval_51588 chr14 30543764 30543998 + 0 NA Intergenic Intergenic -13728 ENSMUSG00000021957.7 ENSMUSG00000021957 ENSMUST00000160406 Tkt protein_coding Interval_61040 chr15 78913621 78914766 + 0 NA promoter-TSS (ENSMUSG00000084864.1) antisense-promoter-TSS (ENSMUSG00000084864.1) 274 ENSMUSG00000116165.1 ENSMUSG00000116165 ENSMUST00000089378 Pdxp protein_coding Interval_80658 chr18 45628645 45629502 + 0 NA intron (ENSMUSG00000054477.16, intron 3 of 7) protein_coding-intron (ENSMUSG00000054477.16, intron 6 of 10) -26180 ENSMUSG00000054477.16 ENSMUSG00000054477 ENSMUST00000236405 Kcnn2 protein_coding Interval_110557 chr4 3870781 3871862 + 0 NA exon (ENSMUSG00000078365.5, exon 1 of 1) protein_coding-exon (ENSMUSG00000078365.5, exon 1 of 1) 784 ENSMUSG00000078365.5 ENSMUSG00000078365 ENSMUST00000105158 Mos protein_coding Interval_125289 chr5 65974247 65976646 + 0 NA promoter-TSS (ENSMUSG00000029205.12) protein_coding-promoter-TSS (ENSMUSG00000029205.12) 11595 ENSMUSG00000107049.1 ENSMUSG00000107049 ENSMUST00000202931 Gm43771 TEC Interval_123785 chr5 35488952 35489401 + 0 NA Intergenic Intergenic 36395 ENSMUSG00000036596.6 ENSMUSG00000036596 ENSMUST00000132959 Cpz protein_coding Interval_117337 chr4 123071439 123071939 + 0 NA Intergenic Intergenic 22339 ENSMUSG00000086153.1 ENSMUSG00000086153 ENSMUST00000127060 Gm12923 antisense Interval_59317 chr15 51595849 51596132 + 0 NA Intergenic Intergenic 33645 ENSMUSG00000115563.1 ENSMUSG00000115563 ENSMUST00000227000 Gm34562 lincRNA Interval_9153 chr1 154100111 154101420 + 0 NA intron (ENSMUSG00000100627.6, intron 2 of 3) lincRNA-intron (ENSMUSG00000100627.6, intron 2 of 2) 17186 ENSMUSG00000100627.6 ENSMUSG00000100627 ENSMUST00000190485 A830008E24Rik lincRNA Interval_12773 chr10 5215710 5217459 + 0 NA intron (ENSMUSG00000096054.3, intron 81 of 145) protein_coding-intron (ENSMUSG00000096054.3, intron 81 of 145) -31058 ENSMUSG00000096054.3 ENSMUSG00000096054 ENSMUST00000214945 Syne1 protein_coding Interval_95987 chr2 118972750 118973108 + 0 NA Intergenic Intergenic -24139 ENSMUSG00000084802.1 ENSMUSG00000084802 ENSMUST00000130025 Gm14089 antisense Interval_142911 chr6 146874802 146875745 + 0 NA Intergenic Intergenic 18412 ENSMUSG00000030292.10 ENSMUSG00000030292 ENSMUST00000148099 Smco2 protein_coding Interval_5538 chr1 89663413 89663806 + 0 NA intron (ENSMUSG00000102009.6, intron 2 of 4) protein_coding-intron (ENSMUSG00000055013.16, intron 6 of 17) 20285 ENSMUSG00000102009.6 ENSMUSG00000102009 ENSMUST00000187011 4933400F21Rik processed_transcript Interval_151659 chr7 125766918 125767736 + 0 NA intron (ENSMUSG00000032743.15, intron 4 of 26) protein_coding-intron (ENSMUSG00000032743.15, intron 5 of 27) 59410 ENSMUSG00000032743.15 ENSMUSG00000032743 ENSMUST00000155059 D430042O09Rik protein_coding Interval_13325 chr10 14969818 14970288 + 0 NA Intergenic Intergenic -14617 ENSMUSG00000088730.1 ENSMUSG00000088730 ENSMUST00000158105 Gm23892 snoRNA Interval_36418 chr12 44221323 44222448 + 0 NA exon (ENSMUSG00000112795.1, exon 1 of 1) processed_pseudogene-exon (ENSMUSG00000112795.1, exon 1 of 1) 140 ENSMUSG00000112795.1 ENSMUSG00000112795 ENSMUST00000217877 Gm2027 processed_pseudogene Interval_61778 chr15 84069965 84070568 + 0 NA Intergenic Intergenic 35343 ENSMUSG00000018865.9 ENSMUSG00000018865 ENSMUST00000229826 Sult4a1 protein_coding Interval_162888 chr9 11440640 11442153 + 0 NA Intergenic Intergenic -86183 ENSMUSG00000110858.1 ENSMUSG00000110858 ENSMUST00000214279 Gm18160 unprocessed_pseudogene Interval_37686 chr12 71111172 71111994 + 0 NA exon (ENSMUSG00000021078.5, exon 1 of 4) protein_coding-exon (ENSMUSG00000021078.5, exon 1 of 4) 113 ENSMUSG00000021078.5 ENSMUSG00000021078 ENSMUST00000221962 Tomm20l protein_coding Interval_138016 chr6 84214975 84215278 + 0 NA Intergenic Intergenic -10126 ENSMUSG00000107538.1 ENSMUSG00000107538 ENSMUST00000203565 Gm44127 lincRNA Interval_113677 chr4 57499047 57499465 + 0 NA intron (ENSMUSG00000090053.9, intron 1 of 6) protein_coding-intron (ENSMUSG00000090053.9, intron 1 of 6) -41707 ENSMUSG00000081615.1 ENSMUSG00000081615 ENSMUST00000121549 Gm12539 processed_pseudogene Interval_168980 chr9 89968501 89969484 + 0 NA intron (ENSMUSG00000032356.12, intron 6 of 26) protein_coding-intron (ENSMUSG00000032356.12, intron 6 of 26) 59080 ENSMUSG00000032356.12 ENSMUSG00000032356 ENSMUST00000190073 Rasgrf1 protein_coding Interval_791 chr1 11295066 11296411 + 0 NA intron (ENSMUSG00000048960.13, intron 5 of 5) protein_coding-intron (ENSMUSG00000048960.13, intron 39 of 39) 71226 ENSMUSG00000103494.1 ENSMUSG00000103494 ENSMUST00000193623 Gm37410 TEC Interval_26540 chr11 58665646 58666367 + 0 NA exon (ENSMUSG00000063549.4, exon 1 of 1) protein_coding-exon (ENSMUSG00000063549.4, exon 1 of 1) 4828 ENSMUSG00000088222.1 ENSMUSG00000088222 ENSMUST00000157597 Gm22599 snoRNA Interval_51881 chr14 33322758 33323226 + 0 NA intron (ENSMUSG00000063506.14, intron 1 of 5) protein_coding-intron (ENSMUSG00000063506.14, intron 1 of 5) 47151 ENSMUSG00000087639.1 ENSMUSG00000087639 ENSMUST00000137359 Gm15512 antisense Interval_22470 chr11 10682452 10682658 + 0 NA Intergenic Intergenic -305473 ENSMUSG00000084045.1 ENSMUSG00000084045 ENSMUST00000118697 Gm11997 processed_pseudogene Interval_10321 chr1 168975288 168975548 + 0 NA Intergenic Intergenic 43671 ENSMUSG00000098829.1 ENSMUSG00000098829 ENSMUST00000184979 Mir6354 miRNA Interval_35804 chr12 30076551 30077271 + 0 NA intron (ENSMUSG00000020673.14, intron 14 of 16) protein_coding-intron (ENSMUSG00000020673.14, intron 14 of 16) 17254 ENSMUSG00000085472.1 ENSMUSG00000085472 ENSMUST00000138626 Gm15691 antisense Interval_104466 chr3 66011512 66011733 + 0 NA Intergenic Intergenic 19897 ENSMUSG00000103369.1 ENSMUSG00000103369 ENSMUST00000192096 Gm6546 processed_pseudogene Interval_71093 chr17 17899195 17899426 + 0 NA intron (ENSMUSG00000079700.7, intron 1 of 1) protein_coding-intron (ENSMUSG00000079700.7, intron 1 of 1) 7965 ENSMUSG00000116634.1 ENSMUSG00000116634 ENSMUST00000231820 Gm7531 processed_pseudogene Interval_67096 chr16 42891762 42892048 + 0 NA intron (ENSMUSG00000116903.1, intron 2 of 3) protein_coding-intron (ENSMUSG00000022708.16, intron 1 of 7) -16165 ENSMUSG00000075070.6 ENSMUSG00000075070 ENSMUST00000130331 4932412D23Rik lincRNA Interval_53677 chr14 60803845 60805062 + 0 NA intron (ENSMUSG00000021993.10, intron 7 of 15) protein_coding-intron (ENSMUSG00000021993.10, intron 7 of 18) 19871 ENSMUSG00000021993.10 ENSMUSG00000021993 ENSMUST00000223709 Mipep protein_coding Interval_141842 chr6 134862941 134863522 + 0 NA Intergenic Intergenic 12073 ENSMUSG00000032652.13 ENSMUSG00000032652 ENSMUST00000203742 Crebl2 protein_coding Interval_67336 chr16 46506681 46507778 + 0 NA Intergenic Intergenic -10457 ENSMUSG00000022656.15 ENSMUSG00000022656 ENSMUST00000133935 Nectin3 protein_coding Interval_136415 chr6 54262938 54263172 + 0 NA intron (ENSMUSG00000086946.7, intron 1 of 4) protein_coding-intron (ENSMUSG00000004633.17, intron 6 of 12) -8144 ENSMUSG00000086946.7 ENSMUSG00000086946 ENSMUST00000144094 Gm15527 processed_transcript Interval_157763 chr8 72844979 72845497 + 0 NA intron (ENSMUSG00000004383.18, intron 12 of 15) protein_coding-intron (ENSMUSG00000004383.18, intron 11 of 14) -49751 ENSMUSG00000110563.1 ENSMUSG00000110563 ENSMUST00000212908 Gm45791 processed_pseudogene Interval_160626 chr8 111152187 111152401 + 0 NA Intergenic Intergenic -6814 ENSMUSG00000084808.7 ENSMUSG00000084808 ENSMUST00000143719 9430091E24Rik processed_transcript Interval_5044 chr1 84630341 84631714 + 0 NA intron (ENSMUSG00000036766.12, intron 1 of 4) protein_coding-intron (ENSMUSG00000036766.12, intron 1 of 12) -7186 ENSMUSG00000036766.12 ENSMUSG00000036766 ENSMUST00000191546 Dner protein_coding Interval_108958 chr3 133590453 133591184 + 0 NA Intergenic Intergenic -2281 ENSMUSG00000077336.1 ENSMUSG00000077336 ENSMUST00000104148 Gm23011 snoRNA Interval_56137 chr14 106636041 106636233 + 0 NA Intergenic Intergenic -15778 ENSMUSG00000115763.1 ENSMUSG00000115763 ENSMUST00000226553 Gm48974 processed_pseudogene Interval_171281 chr9 116032383 116033119 + 0 NA intron (ENSMUSG00000056880.12, intron 13 of 13) protein_coding-intron (ENSMUSG00000056880.12, intron 14 of 14) 8313 ENSMUSG00000080848.3 ENSMUSG00000080848 ENSMUST00000117563 Gm9385 processed_pseudogene Interval_136925 chr6 64647757 64650617 + 0 NA intron (ENSMUSG00000071424.10, intron 14 of 15) protein_coding-intron (ENSMUSG00000071424.10, intron 14 of 15) -14001 ENSMUSG00000071424.10 ENSMUSG00000071424 ENSMUST00000210324 Grid2 protein_coding Interval_95414 chr2 108832142 108832357 + 0 NA Intergenic Intergenic 43009 ENSMUSG00000083424.3 ENSMUSG00000083424 ENSMUST00000121779 Rpl35a-ps4 processed_pseudogene Interval_134839 chr6 32180702 32181800 + 0 NA intron (ENSMUSG00000029765.12, intron 24 of 31) protein_coding-intron (ENSMUSG00000029765.12, intron 24 of 31) 43948 ENSMUSG00000029765.12 ENSMUSG00000029765 ENSMUST00000200732 Plxna4 protein_coding Interval_136448 chr6 54572546 54572998 + 0 NA Intergenic Intergenic 20376 ENSMUSG00000038074.16 ENSMUSG00000038074 ENSMUST00000154907 Fkbp14 protein_coding Interval_52200 chr14 40233791 40234000 + 0 NA Intergenic Intergenic -18654 ENSMUSG00000077019.1 ENSMUSG00000077019 ENSMUST00000103831 Gm22191 miRNA Interval_31925 chr11 103900389 103901502 + 0 NA intron (ENSMUSG00000034187.18, intron 8 of 8) protein_coding-intron (ENSMUSG00000034187.18, intron 8 of 20) -20702 ENSMUSG00000092540.1 ENSMUSG00000092540 ENSMUST00000172606 Gm8738 processed_pseudogene Interval_31230 chr11 99023661 99024661 + 0 NA promoter-TSS (ENSMUSG00000020914.17) protein_coding-promoter-TSS (ENSMUSG00000020914.17) -7009 ENSMUSG00000065262.1 ENSMUSG00000065262 ENSMUST00000083328 Gm23451 snoRNA Interval_706 chr1 10039284 10040290 + 0 NA promoter-TSS (ENSMUSG00000056763.16) protein_coding-promoter-TSS (ENSMUSG00000056763.16) 20 ENSMUSG00000056763.16 ENSMUSG00000056763 ENSMUST00000148663 Cspp1 protein_coding Interval_93028 chr2 69663904 69664093 + 0 NA intron (ENSMUSG00000063145.10, intron 4 of 4) protein_coding-intron (ENSMUSG00000063145.10, intron 9 of 11) -6122 ENSMUSG00000075307.3 ENSMUSG00000075307 ENSMUST00000100050 Klhl41 protein_coding Interval_166149 chr9 57071989 57073891 + 0 NA promoter-TSS (ENSMUSG00000074284.6) antisense-promoter-TSS (ENSMUSG00000074284.6) 900 ENSMUSG00000042557.14 ENSMUSG00000042557 ENSMUST00000167963 Sin3a protein_coding Interval_170477 chr9 108224770 108225866 + 0 NA intron (ENSMUSG00000039952.15, intron 1 of 2) protein_coding-intron (ENSMUSG00000039952.15, intron 2 of 3) -33970 ENSMUSG00000102538.1 ENSMUSG00000102538 ENSMUST00000194491 Gm37230 TEC Interval_155476 chr8 33821779 33823543 + 0 NA intron (ENSMUSG00000097442.1, intron 1 of 1) protein_coding-intron (ENSMUSG00000031586.17, intron 5 of 7) 9458 ENSMUSG00000097442.1 ENSMUSG00000097442 ENSMUST00000181120 Gm26632 antisense Interval_152264 chr7 131112640 131112901 + 0 NA intron (ENSMUSG00000047517.12, intron 38 of 40) protein_coding-intron (ENSMUSG00000047517.12, intron 44 of 46) 33544 ENSMUSG00000013668.9 ENSMUSG00000013668 ENSMUST00000070980 4933402N03Rik protein_coding Interval_67132 chr16 43724367 43724868 + 0 NA Intergenic Intergenic -13785 ENSMUSG00000116684.1 ENSMUSG00000116684 ENSMUST00000232267 Gm49735 lincRNA Interval_80586 chr18 44445978 44446187 + 0 NA intron (ENSMUSG00000071856.10, intron 13 of 16) protein_coding-intron (ENSMUSG00000071856.10, intron 15 of 18) 65580 ENSMUSG00000024472.9 ENSMUSG00000024472 ENSMUST00000025350 Dcp2 protein_coding Interval_71481 chr17 24061795 24062715 + 0 NA intron (ENSMUSG00000016946.6, intron 1 of 5) protein_coding-intron (ENSMUSG00000016946.6, intron 1 of 5) -1938 ENSMUSG00000016946.6 ENSMUSG00000016946 ENSMUST00000234555 Kctd5 protein_coding Interval_2755 chr1 44212872 44213444 + 0 NA TTS (ENSMUSG00000089703.1) processed_pseudogene-TTS (ENSMUSG00000089703.1) 996 ENSMUSG00000089703.1 ENSMUSG00000089703 ENSMUST00000161563 Gm15833 processed_pseudogene Interval_99150 chr2 157506574 157507618 + 0 NA Intergenic Intergenic 14932 ENSMUSG00000081740.3 ENSMUSG00000081740 ENSMUST00000117142 Gm14279 processed_pseudogene Interval_162614 chr9 6663544 6664103 + 0 NA Intergenic Intergenic 1952 ENSMUSG00000110732.1 ENSMUSG00000110732 ENSMUST00000217088 Gm48674 processed_pseudogene Interval_135710 chr6 44078482 44078686 + 0 NA Intergenic Intergenic 4771 ENSMUSG00000107598.1 ENSMUSG00000107598 ENSMUST00000203777 Gm35216 lincRNA Interval_78732 chr18 19762378 19763654 + 0 NA Intergenic Intergenic 55923 ENSMUSG00000087960.1 ENSMUSG00000087960 ENSMUST00000157335 Gm25392 misc_RNA Interval_61311 chr15 80755376 80755760 + 0 NA intron (ENSMUSG00000047888.10, intron 2 of 24) protein_coding-intron (ENSMUSG00000047888.10, intron 2 of 24) 43297 ENSMUSG00000116480.1 ENSMUSG00000116480 ENSMUST00000230620 Gm49512 sense_intronic Interval_120799 chr4 150709976 150710295 + 0 NA Intergenic Intergenic -31343 ENSMUSG00000085869.1 ENSMUSG00000085869 ENSMUST00000149065 Gm16079 lincRNA Interval_6669 chr1 118647666 118648656 + 0 NA intron (ENSMUSG00000026380.10, intron 2 of 14) protein_coding-intron (ENSMUSG00000026380.10, intron 2 of 14) 3634 ENSMUSG00000101624.1 ENSMUSG00000101624 ENSMUST00000185504 Gm28882 processed_pseudogene Interval_64561 chr16 13336981 13337270 + 0 NA intron (ENSMUSG00000009569.14, intron 3 of 16) protein_coding-intron (ENSMUSG00000009569.14, intron 3 of 16) -21296 ENSMUSG00000009569.14 ENSMUSG00000009569 ENSMUST00000149359 Mrtfb protein_coding Interval_60566 chr15 75118341 75119182 + 0 NA Intergenic Intergenic -6824 ENSMUSG00000022584.14 ENSMUSG00000022584 ENSMUST00000191451 Ly6c2 protein_coding Interval_32857 chr11 112179689 112181202 + 0 NA Intergenic Intergenic 73007 ENSMUSG00000085324.1 ENSMUSG00000085324 ENSMUST00000146550 Gm11680 lincRNA Interval_52577 chr14 47635461 47635872 + 0 NA Intergenic Intergenic -28121 ENSMUSG00000021843.17 ENSMUSG00000021843 ENSMUST00000190857 Ktn1 protein_coding Interval_28771 chr11 78215715 78216224 + 0 NA intron (ENSMUSG00000002052.6, intron 10 of 18) protein_coding-intron (ENSMUSG00000002052.6, intron 28 of 36) 7717 ENSMUSG00000002052.6 ENSMUSG00000002052 ENSMUST00000108314 Supt6 protein_coding Interval_9172 chr1 154661679 154661865 + 0 NA intron (ENSMUSG00000004110.17, intron 5 of 11) protein_coding-intron (ENSMUSG00000004110.17, intron 3 of 46) 155169 ENSMUSG00000004110.17 ENSMUSG00000004110 ENSMUST00000186256 Cacna1e protein_coding Interval_156371 chr8 47769076 47771441 + 0 NA Intergenic Intergenic -3297 ENSMUSG00000110539.1 ENSMUSG00000110539 ENSMUST00000211965 Gm45864 lincRNA Interval_57803 chr15 20872610 20873053 + 0 NA intron (ENSMUSG00000040452.9, intron 3 of 3) protein_coding-intron (ENSMUSG00000040452.9, intron 3 of 3) -36041 ENSMUSG00000089258.1 ENSMUSG00000089258 ENSMUST00000158633 Gm25711 snoRNA Interval_83695 chr19 3786637 3786837 + 0 NA intron (ENSMUSG00000045098.19, intron 3 of 9) protein_coding-intron (ENSMUSG00000045098.19, intron 2 of 8) 18591 ENSMUSG00000045098.19 ENSMUSG00000045098 ENSMUST00000176125 Kmt5b protein_coding Interval_27607 chr11 69015552 69017182 + 0 NA intron (ENSMUSG00000020898.18, intron 1 of 22) protein_coding-intron (ENSMUSG00000020898.18, intron 1 of 22) -18154 ENSMUSG00000020898.18 ENSMUSG00000020898 ENSMUST00000161271 Ctc1 protein_coding Interval_165545 chr9 49228729 49228952 + 0 NA Intergenic Intergenic -21691 ENSMUSG00000054156.8 ENSMUSG00000054156 ENSMUST00000067007 Gm4894 protein_coding Interval_61328 chr15 80875690 80876856 + 0 NA intron (ENSMUSG00000047888.10, intron 3 of 17) protein_coding-intron (ENSMUSG00000047888.10, intron 6 of 24) -46791 ENSMUSG00000047888.10 ENSMUSG00000047888 ENSMUST00000228525 Tnrc6b protein_coding Interval_87313 chr19 47578534 47580588 + 0 NA promoter-TSS (ENSMUSG00000025060.15) protein_coding-promoter-TSS (ENSMUSG00000025060.15) 22768 ENSMUSG00000118206.1 ENSMUSG00000118206 ENSMUST00000237007 Gm50358 antisense Interval_86437 chr19 40511877 40512130 + 0 NA intron (ENSMUSG00000025006.18, intron 1 of 23) protein_coding-intron (ENSMUSG00000025006.18, intron 1 of 21) 49055 ENSMUSG00000096592.1 ENSMUSG00000096592 ENSMUST00000120920 Gm15801 processed_pseudogene Interval_162733 chr9 8133714 8135003 + 0 NA promoter-TSS (ENSMUSG00000040729.8) protein_coding-promoter-TSS (ENSMUSG00000040729.8) -64 ENSMUSG00000040729.8 ENSMUSG00000040729 ENSMUST00000214150 Cep126 protein_coding Interval_110727 chr4 7355016 7355638 + 0 NA Intergenic Intergenic -205361 ENSMUSG00000086070.1 ENSMUSG00000086070 ENSMUST00000129988 8430436N08Rik lincRNA Interval_76156 chr17 75638441 75638799 + 0 NA Intergenic Intergenic -22620 ENSMUSG00000117540.1 ENSMUSG00000117540 ENSMUST00000234396 Gm9360 processed_pseudogene Interval_158870 chr8 87594192 87595440 + 0 NA Intergenic Intergenic 30963 ENSMUSG00000069971.5 ENSMUSG00000069971 ENSMUST00000093342 4933402J07Rik protein_coding Interval_11956 chr1 187637784 187638416 + 0 NA intron (ENSMUSG00000103961.1, intron 1 of 3) protein_coding-intron (ENSMUSG00000026610.13, intron 1 of 7) 13724 ENSMUSG00000103961.1 ENSMUSG00000103961 ENSMUST00000191663 Gm36388 antisense Interval_49331 chr13 111158258 111158571 + 0 NA Intergenic Intergenic 71017 ENSMUSG00000114824.1 ENSMUSG00000114824 ENSMUST00000225326 3110015C05Rik lincRNA Interval_131341 chr5 136583767 136585456 + 0 NA Intergenic Intergenic -17121 ENSMUSG00000029705.17 ENSMUSG00000029705 ENSMUST00000177305 Cux1 protein_coding Interval_45884 chr13 58785691 58786726 + 0 NA intron (ENSMUSG00000114231.1, intron 1 of 3) lincRNA-intron (ENSMUSG00000114231.1, intron 1 of 3) 11240 ENSMUSG00000114231.1 ENSMUSG00000114231 ENSMUST00000223670 Gm40968 lincRNA Interval_18153 chr10 83056010 83057438 + 0 NA intron (ENSMUSG00000034612.7, intron 1 of 2) protein_coding-intron (ENSMUSG00000034612.7, intron 1 of 2) -25029 ENSMUSG00000112084.1 ENSMUSG00000112084 ENSMUST00000218071 Gm10773 TEC Interval_138786 chr6 91842998 91844040 + 0 NA Intergenic Intergenic 34466 ENSMUSG00000108310.1 ENSMUSG00000108310 ENSMUST00000206250 Gm44712 TEC Interval_171828 chr9 121477081 121477767 + 0 NA Intergenic Intergenic 17086 ENSMUSG00000032532.7 ENSMUSG00000032532 ENSMUST00000217581 Cck protein_coding Interval_151879 chr7 127276272 127276755 + 0 NA Intergenic Intergenic -2458 ENSMUSG00000049091.6 ENSMUSG00000049091 ENSMUST00000082428 Sephs2 protein_coding Interval_17126 chr10 71485122 71485606 + 0 NA exon (ENSMUSG00000112108.1, exon 1 of 2) lincRNA-exon (ENSMUSG00000112108.1, exon 1 of 2) 156 ENSMUSG00000112108.1 ENSMUSG00000112108 ENSMUST00000219700 4930551I15Rik lincRNA Interval_156898 chr8 61539945 61540177 + 0 NA intron (ENSMUSG00000058056.16, intron 10 of 19) protein_coding-intron (ENSMUSG00000058056.16, intron 10 of 19) -24161 ENSMUSG00000058056.16 ENSMUSG00000058056 ENSMUST00000123523 Palld protein_coding Interval_42585 chr13 15968617 15968876 + 0 NA intron (ENSMUSG00000113701.1, intron 1 of 1) transcribed_processed_pseudogene-intron (ENSMUSG00000113701.1, intron 1 of 3) 1664 ENSMUSG00000113080.1 ENSMUSG00000113080 ENSMUST00000223232 Gm48928 processed_pseudogene Interval_63449 chr15 101154947 101155454 + 0 NA Intergenic Intergenic -18867 ENSMUSG00000000532.11 ENSMUSG00000000532 ENSMUST00000000544 Acvr1b protein_coding Interval_128178 chr5 111548050 111549363 + 0 NA Intergenic Intergenic -32855 ENSMUSG00000052848.7 ENSMUSG00000052848 ENSMUST00000198458 C130026L21Rik lincRNA Interval_144921 chr7 28932403 28933045 + 0 NA intron (ENSMUSG00000109314.1, intron 1 of 1) protein_coding-intron (ENSMUSG00000054808.15, intron 1 of 20) 10804 ENSMUSG00000109314.1 ENSMUSG00000109314 ENSMUST00000208229 Gm44699 sense_intronic Interval_173872 chrX 106484996 106486147 + 0 NA promoter-TSS (ENSMUSG00000033737.14) protein_coding-promoter-TSS (ENSMUSG00000033737.14) -50728 ENSMUSG00000033737.14 ENSMUSG00000033737 ENSMUST00000140707 Fndc3c1 protein_coding Interval_145968 chr7 42728444 42728736 + 0 NA Intergenic Intergenic -5819 ENSMUSG00000092554.1 ENSMUSG00000092554 ENSMUST00000172625 Gm18128 processed_pseudogene Interval_3427 chr1 58275613 58276521 + 0 NA intron (ENSMUSG00000089822.1, intron 4 of 5) antisense-intron (ENSMUSG00000089822.1, intron 4 of 5) -2259 ENSMUSG00000079554.2 ENSMUSG00000079554 ENSMUST00000114366 Aox2 protein_coding Interval_133768 chr6 11940246 11940454 + 0 NA intron (ENSMUSG00000029629.17, intron 3 of 17) protein_coding-intron (ENSMUSG00000029629.17, intron 3 of 15) -32867 ENSMUSG00000029632.7 ENSMUSG00000029632 ENSMUST00000204714 Ndufa4 protein_coding Interval_169782 chr9 101243038 101243376 + 0 NA intron (ENSMUSG00000043154.15, intron 1 of 13) protein_coding-intron (ENSMUSG00000043154.15, intron 1 of 13) 20255 ENSMUSG00000077393.1 ENSMUSG00000077393 ENSMUST00000104205 Gm24338 snoRNA Interval_91803 chr2 49730418 49730967 + 0 NA TTS (ENSMUSG00000026764.15) protein_coding-TTS (ENSMUSG00000026764.15) -1919 ENSMUSG00000026764.15 ENSMUSG00000026764 ENSMUST00000132968 Kif5c protein_coding Interval_42573 chr13 15670189 15670392 + 0 NA intron (ENSMUSG00000021318.15, intron 10 of 11) protein_coding-intron (ENSMUSG00000021318.15, intron 10 of 14) 20355 ENSMUSG00000113191.1 ENSMUSG00000113191 ENSMUST00000220835 Gm48343 processed_pseudogene Interval_26928 chr11 61633113 61633455 + 0 NA Intergenic Intergenic -35762 ENSMUSG00000004837.2 ENSMUSG00000004837 ENSMUST00000155380 Grap protein_coding Interval_159348 chr8 93970065 93970272 + 0 NA TTS (ENSMUSG00000031748.16) protein_coding-TTS (ENSMUSG00000031748.16) 4372 ENSMUSG00000031748.16 ENSMUSG00000031748 ENSMUST00000212008 Gnao1 protein_coding Interval_69965 chr17 3557182 3558261 + 0 NA promoter-TSS (ENSMUSG00000036983.7) protein_coding-promoter-TSS (ENSMUSG00000036983.7) 33 ENSMUSG00000036983.7 ENSMUSG00000036983 ENSMUST00000232051 Tfb1m protein_coding Interval_104102 chr3 58594150 58594980 + 0 NA Intergenic Intergenic 17867 ENSMUSG00000075700.9 ENSMUSG00000075700 ENSMUST00000125815 Selenot protein_coding Interval_80247 chr18 38523947 38524605 + 0 NA Intergenic Intergenic -42973 ENSMUSG00000118112.1 ENSMUSG00000118112 ENSMUST00000236084 Gm50349 processed_pseudogene Interval_115075 chr4 89281544 89282789 + 0 NA promoter-TSS (ENSMUSG00000044303.6) protein_coding-promoter-TSS (ENSMUSG00000044303.6) -9579 ENSMUSG00000087659.7 ENSMUSG00000087659 ENSMUST00000127174 Gm12606 lincRNA Interval_144604 chr7 26855624 26855860 + 0 NA Intergenic Intergenic 14798 ENSMUSG00000005547.14 ENSMUSG00000005547 ENSMUST00000170631 Cyp2a5 protein_coding Interval_127446 chr5 103995121 103995384 + 0 NA intron (ENSMUSG00000029311.16, intron 5 of 6) protein_coding-intron (ENSMUSG00000029311.16, intron 5 of 6) 5882 ENSMUSG00000082527.1 ENSMUSG00000082527 ENSMUST00000122390 Gm8200 processed_pseudogene Interval_171322 chr9 116359838 116360086 + 0 NA Intergenic Intergenic 28794 ENSMUSG00000110752.1 ENSMUSG00000110752 ENSMUST00000217456 D730003K21Rik lincRNA Interval_59230 chr15 49218122 49218309 + 0 NA Intergenic Intergenic 23878 ENSMUSG00000115775.1 ENSMUSG00000115775 ENSMUST00000228245 Gm41318 lincRNA Interval_117743 chr4 125967248 125967496 + 0 NA Intergenic Intergenic -44955 ENSMUSG00000085562.7 ENSMUSG00000085562 ENSMUST00000144539 2610028E06Rik lincRNA Interval_116520 chr4 114999552 115000676 + 0 NA promoter-TSS (ENSMUSG00000028718.16) protein_coding-promoter-TSS (ENSMUSG00000028718.16) -6647 ENSMUSG00000028718.16 ENSMUSG00000028718 ENSMUST00000144316 Stil protein_coding Interval_147760 chr7 73411694 73412333 + 0 NA intron (ENSMUSG00000070509.15, intron 2 of 2) protein_coding-intron (ENSMUSG00000070509.15, intron 3 of 3) 7663 ENSMUSG00000108678.1 ENSMUSG00000108678 ENSMUST00000206096 Gm44758 TEC Interval_13088 chr10 11263468 11264889 + 0 NA intron (ENSMUSG00000097007.3, intron 5 of 5) bidirectional_promoter_lncRNA-intron (ENSMUSG00000097007.3, intron 1 of 1) 17043 ENSMUSG00000097007.3 ENSMUSG00000097007 ENSMUST00000181688 4930432B10Rik bidirectional_promoter_lncRNA Interval_64434 chr16 11341751 11342260 + 0 NA intron (ENSMUSG00000071669.14, intron 1 of 20) protein_coding-intron (ENSMUSG00000071669.14, intron 1 of 7) 19097 ENSMUSG00000071669.14 ENSMUSG00000071669 ENSMUST00000134941 Snx29 protein_coding Interval_113160 chr4 48737416 48737937 + 0 NA Intergenic Intergenic 8174 ENSMUSG00000083091.1 ENSMUSG00000083091 ENSMUST00000122034 Gm12438 processed_pseudogene Interval_12397 chr1 192998134 192998595 + 0 NA TTS (ENSMUSG00000089158.1) misc_RNA-TTS (ENSMUSG00000089158.1) 210 ENSMUSG00000089158.1 ENSMUSG00000089158 ENSMUST00000158533 Gm23583 misc_RNA Interval_170434 chr9 107950590 107951751 + 0 NA exon (ENSMUSG00000032586.9, exon 1 of 15) protein_coding-exon (ENSMUSG00000032586.9, exon 1 of 15) -11063 ENSMUSG00000032586.9 ENSMUSG00000032586 ENSMUST00000195803 Traip protein_coding Interval_145607 chr7 35924327 35925087 + 0 NA Intergenic Intergenic 86447 ENSMUSG00000100387.1 ENSMUSG00000100387 ENSMUST00000187488 Gm28514 lincRNA Interval_5050 chr1 84684448 84685256 + 0 NA intron (ENSMUSG00000036766.12, intron 1 of 4) protein_coding-intron (ENSMUSG00000036766.12, intron 1 of 12) -10987 ENSMUSG00000093254.1 ENSMUSG00000093254 ENSMUST00000175513 Mir5126 miRNA Interval_87158 chr19 46510658 46511920 + 0 NA intron (ENSMUSG00000025034.9, intron 1 of 5) protein_coding-intron (ENSMUSG00000025034.9, intron 1 of 5) -3371 ENSMUSG00000025034.9 ENSMUSG00000025034 ENSMUST00000235934 Trim8 protein_coding Interval_57221 chr15 7934115 7934751 + 0 NA intron (ENSMUSG00000039828.7, intron 10 of 17) protein_coding-intron (ENSMUSG00000039828.7, intron 10 of 17) -40642 ENSMUSG00000116090.1 ENSMUSG00000116090 ENSMUST00000229131 Rpl19-ps6 processed_pseudogene Interval_41349 chr12 112987914 112988267 + 0 NA promoter-TSS (ENSMUSG00000011158.8) protein_coding-promoter-TSS (ENSMUSG00000011158.8) -1357 ENSMUSG00000011158.8 ENSMUSG00000011158 ENSMUST00000223037 Brf1 protein_coding Interval_169419 chr9 97093963 97095205 + 0 NA intron (ENSMUSG00000032449.13, intron 3 of 7) protein_coding-intron (ENSMUSG00000032449.13, intron 3 of 6) -4557 ENSMUSG00000032449.13 ENSMUSG00000032449 ENSMUST00000152632 Slc25a36 protein_coding Interval_75775 chr17 71255030 71255235 + 0 NA TTS (ENSMUSG00000024053.11) protein_coding-TTS (ENSMUSG00000024053.11) 55149 ENSMUSG00000024053.11 ENSMUSG00000024053 ENSMUST00000233659 Emilin2 protein_coding Interval_102113 chr3 17834485 17834924 + 0 NA Intergenic Intergenic -30957 ENSMUSG00000087893.1 ENSMUSG00000087893 ENSMUST00000157268 Gm23441 snRNA Interval_174601 chrX 159708271 159708682 + 0 NA promoter-TSS (ENSMUSG00000040990.17) protein_coding-promoter-TSS (ENSMUSG00000040990.17) 120011 ENSMUSG00000083906.1 ENSMUSG00000083906 ENSMUST00000119345 Gm15186 processed_pseudogene Interval_89555 chr2 22721627 22722309 + 0 NA Intergenic Intergenic 8457 ENSMUSG00000083453.1 ENSMUSG00000083453 ENSMUST00000120235 Gm13338 processed_pseudogene Interval_102584 chr3 27983902 27984396 + 0 NA promoter-TSS (ENSMUSG00000027695.16) protein_coding-promoter-TSS (ENSMUSG00000027695.16) -87781 ENSMUSG00000043164.3 ENSMUSG00000043164 ENSMUST00000058077 Tmem212 protein_coding Interval_119324 chr4 136867748 136868595 + 0 NA Intergenic Intergenic 18016 ENSMUSG00000036905.8 ENSMUSG00000036905 ENSMUST00000046384 C1qb protein_coding Interval_29361 chr11 83440305 83441075 + 0 NA TTS (ENSMUSG00000020682.17) protein_coding-TTS (ENSMUSG00000020682.17) 559 ENSMUSG00000035085.5 ENSMUSG00000035085 ENSMUST00000188702 1700020L24Rik protein_coding Interval_130972 chr5 134339735 134340708 + 0 NA Intergenic Intergenic 13767 ENSMUSG00000093311.1 ENSMUSG00000093311 ENSMUST00000175570 Mir3965 miRNA Interval_170523 chr9 108507365 108508467 + 0 NA promoter-TSS (ENSMUSG00000032604.16) protein_coding-promoter-TSS (ENSMUSG00000032604.16) -6629 ENSMUSG00000032604.16 ENSMUSG00000032604 ENSMUST00000136293 Qars protein_coding Interval_162574 chr9 4806393 4806928 + 0 NA Intergenic Intergenic -11141 ENSMUSG00000025892.16 ENSMUSG00000025892 ENSMUST00000163309 Gria4 protein_coding Interval_158155 chr8 79277410 79277627 + 0 NA intron (ENSMUSG00000037022.3, intron 4 of 7) protein_coding-intron (ENSMUSG00000037022.3, intron 3 of 6) 17162 ENSMUSG00000037022.3 ENSMUSG00000037022 ENSMUST00000210231 Mmaa protein_coding Interval_107063 chr3 103245234 103247263 + 0 NA TTS (ENSMUSG00000104976.1) processed_pseudogene-TTS (ENSMUSG00000104976.1) 1015 ENSMUSG00000104976.1 ENSMUSG00000104976 ENSMUST00000200621 Gm43060 processed_pseudogene Interval_142248 chr6 139922917 139923111 + 0 NA intron (ENSMUSG00000030228.18, intron 18 of 20) protein_coding-intron (ENSMUSG00000030228.18, intron 13 of 15) 92627 ENSMUSG00000107870.1 ENSMUSG00000107870 ENSMUST00000204549 Gm43940 TEC Interval_139859 chr6 111764650 111764908 + 0 NA Intergenic Intergenic 136791 ENSMUSG00000089084.1 ENSMUSG00000089084 ENSMUST00000158459 Gm24005 misc_RNA Interval_80517 chr18 43252558 43253205 + 0 NA intron (ENSMUSG00000039954.9, intron 4 of 11) protein_coding-intron (ENSMUSG00000039954.9, intron 4 of 12) 45204 ENSMUSG00000039954.9 ENSMUSG00000039954 ENSMUST00000235682 Stk32a protein_coding Interval_56892 chr14 122904293 122905163 + 0 NA intron (ENSMUSG00000041625.15, intron 1 of 2) protein_coding-intron (ENSMUSG00000041625.15, intron 1 of 2) -8347 ENSMUSG00000075463.3 ENSMUSG00000075463 ENSMUST00000162218 4930594M22Rik processed_transcript Interval_62662 chr15 96078267 96079132 + 0 NA promoter-TSS (ENSMUSG00000078925.11) lincRNA-promoter-TSS (ENSMUSG00000078925.11) -23874 ENSMUSG00000078925.11 ENSMUSG00000078925 ENSMUST00000140253 D030018L15Rik lincRNA Interval_39629 chr12 91667932 91669095 + 0 NA intron (ENSMUSG00000020961.15, intron 3 of 4) protein_coding-intron (ENSMUSG00000020961.15, intron 4 of 6) -16152 ENSMUSG00000086689.1 ENSMUSG00000086689 ENSMUST00000151945 Gm16876 antisense Interval_25704 chr11 50900284 50900540 + 0 NA TTS (ENSMUSG00000049321.17) protein_coding-TTS (ENSMUSG00000049321.17) -12911 ENSMUSG00000048728.15 ENSMUSG00000048728 ENSMUST00000136599 Zfp454 protein_coding Interval_73701 chr17 42873877 42874486 + 0 NA intron (ENSMUSG00000061665.7, intron 1 of 17) protein_coding-intron (ENSMUSG00000061665.7, intron 1 of 17) -43151 ENSMUSG00000061665.7 ENSMUSG00000061665 ENSMUST00000233626 Cd2ap protein_coding Interval_129518 chr5 120683000 120683802 + 0 NA promoter-TSS (ENSMUSG00000029603.15) protein_coding-promoter-TSS (ENSMUSG00000029603.15) -1322 ENSMUSG00000029603.15 ENSMUSG00000029603 ENSMUST00000124079 Dtx1 protein_coding Interval_116141 chr4 108070904 108071760 + 0 NA promoter-TSS (ENSMUSG00000028603.15) protein_coding-promoter-TSS (ENSMUSG00000028603.15) -16025 ENSMUSG00000098980.1 ENSMUSG00000098980 ENSMUST00000183919 Mir6397 miRNA Interval_1573 chr1 27139315 27139716 + 0 NA Intergenic Intergenic -180294 ENSMUSG00000095256.1 ENSMUSG00000095256 ENSMUST00000179494 n-R5s209 rRNA Interval_140759 chr6 121098155 121098361 + 0 NA intron (ENSMUSG00000051586.17, intron 1 of 14) protein_coding-intron (ENSMUSG00000051586.17, intron 1 of 14) -16649 ENSMUSG00000051586.17 ENSMUSG00000051586 ENSMUST00000207993 Mical3 protein_coding Interval_35437 chr12 21743552 21744398 + 0 NA Intergenic Intergenic 32732 ENSMUSG00000091105.1 ENSMUSG00000091105 ENSMUST00000164169 Mrto4-ps2 processed_pseudogene Interval_128865 chr5 115703686 115704209 + 0 NA intron (ENSMUSG00000041609.16, intron 2 of 4) protein_coding-intron (ENSMUSG00000041609.16, intron 2 of 8) -54153 ENSMUSG00000041609.16 ENSMUSG00000041609 ENSMUST00000148840 Bicdl1 protein_coding Interval_117871 chr4 126776233 126777661 + 0 NA intron (ENSMUSG00000028830.14, intron 2 of 2) protein_coding-intron (ENSMUSG00000028830.14, intron 2 of 20) 19468 ENSMUSG00000082498.1 ENSMUSG00000082498 ENSMUST00000118333 Gm12937 processed_pseudogene Interval_78521 chr18 14203734 14204807 + 0 NA Intergenic Intergenic -28039 ENSMUSG00000117633.1 ENSMUSG00000117633 ENSMUST00000234218 8430422H06Rik lincRNA Interval_11474 chr1 182090139 182090446 + 0 NA Intergenic Intergenic 18889 ENSMUSG00000103379.1 ENSMUSG00000103379 ENSMUST00000193768 Gm37177 processed_pseudogene Interval_159994 chr8 105648205 105648470 + 0 NA intron (ENSMUSG00000005698.15, intron 2 of 9) protein_coding-intron (ENSMUSG00000005698.15, intron 2 of 11) -10987 ENSMUSG00000098120.1 ENSMUSG00000098120 ENSMUST00000182046 Gm5914 lincRNA Interval_124069 chr5 38014976 38015543 + 0 NA Intergenic Intergenic 12750 ENSMUSG00000107129.1 ENSMUSG00000107129 ENSMUST00000201521 Gm43762 TEC Interval_15383 chr10 45288078 45289974 + 0 NA promoter-TSS (ENSMUSG00000019848.14) protein_coding-promoter-TSS (ENSMUSG00000019848.14) 398 ENSMUSG00000090088.1 ENSMUSG00000090088 ENSMUST00000162062 Gm15934 antisense Interval_98428 chr2 152293304 152294398 + 0 NA promoter-TSS (ENSMUSG00000027465.13) protein_coding-promoter-TSS (ENSMUSG00000027465.13) -329 ENSMUSG00000027465.13 ENSMUSG00000027465 ENSMUST00000141373 Tbc1d20 protein_coding Interval_162642 chr9 7183936 7185445 + 0 NA promoter-TSS (ENSMUSG00000047193.16) protein_coding-promoter-TSS (ENSMUSG00000047193.16) -18795 ENSMUSG00000032002.10 ENSMUSG00000032002 ENSMUST00000216770 Dcun1d5 protein_coding Interval_76027 chr17 74461950 74462704 + 0 NA Intergenic Intergenic -14121 ENSMUSG00000039193.9 ENSMUSG00000039193 ENSMUST00000234086 Nlrc4 protein_coding Interval_82459 chr18 74212786 74213176 + 0 NA Intergenic Intergenic -4890 ENSMUSG00000024560.7 ENSMUSG00000024560 ENSMUST00000236679 Cxxc1 protein_coding Interval_138019 chr6 84272704 84272942 + 0 NA intron (ENSMUSG00000107538.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000107538.1, intron 1 of 1) 47571 ENSMUSG00000107538.1 ENSMUSG00000107538 ENSMUST00000203565 Gm44127 lincRNA Interval_156086 chr8 43961003 43961883 + 0 NA Intergenic Intergenic -46839 ENSMUSG00000109993.1 ENSMUSG00000109993 ENSMUST00000209295 Gm45659 lincRNA Interval_159757 chr8 101106788 101108036 + 0 NA Intergenic Intergenic -381057 ENSMUSG00000109769.1 ENSMUSG00000109769 ENSMUST00000210760 Gm39232 lincRNA Interval_74279 chr17 47862158 47862465 + 0 NA Intergenic Intergenic 13477 ENSMUSG00000064748.1 ENSMUSG00000064748 ENSMUST00000082814 n-R5s28 rRNA Interval_2643 chr1 42878026 42878834 + 0 NA intron (ENSMUSG00000060679.14, intron 2 of 3) protein_coding-intron (ENSMUSG00000060679.14, intron 2 of 10) -11612 ENSMUSG00000077448.1 ENSMUSG00000077448 ENSMUST00000104260 Gm23126 snoRNA Interval_142151 chr6 137641785 137642261 + 0 NA intron (ENSMUSG00000015766.14, intron 1 of 3) protein_coding-intron (ENSMUSG00000015766.14, intron 1 of 21) -48448 ENSMUSG00000107878.1 ENSMUSG00000107878 ENSMUST00000203153 Gm44106 TEC Interval_66635 chr16 35776273 35778591 + 0 NA intron (ENSMUSG00000022849.5, intron 1 of 2) protein_coding-intron (ENSMUSG00000022849.5, intron 1 of 8) 7025 ENSMUSG00000022849.5 ENSMUSG00000022849 ENSMUST00000023555 Hspbap1 protein_coding Interval_113521 chr4 55505047 55505452 + 0 NA Intergenic Intergenic -3045 ENSMUSG00000082952.1 ENSMUSG00000082952 ENSMUST00000119155 Gm12507 processed_pseudogene Interval_88873 chr2 11914650 11915319 + 0 NA Intergenic Intergenic 14902 ENSMUSG00000103542.1 ENSMUSG00000103542 ENSMUST00000193884 Gm34768 unprocessed_pseudogene Interval_40201 chr12 102519417 102519794 + 0 NA Intergenic Intergenic 35148 ENSMUSG00000021192.16 ENSMUSG00000021192 ENSMUST00000222744 Golga5 protein_coding Interval_145019 chr7 29466158 29466835 + 0 NA intron (ENSMUSG00000030583.16, intron 1 of 2) protein_coding-intron (ENSMUSG00000030583.16, intron 2 of 22) -58047 ENSMUSG00000074224.3 ENSMUSG00000074224 ENSMUST00000098602 4932431P20Rik transcribed_unitary_pseudogene Interval_98779 chr2 154894298 154895419 + 0 NA intron (ENSMUSG00000027596.10, intron 1 of 4) protein_coding-intron (ENSMUSG00000027596.10, intron 1 of 4) -2076 ENSMUSG00000074656.12 ENSMUSG00000074656 ENSMUST00000135524 Eif2s2 protein_coding Interval_40046 chr12 100841145 100841671 + 0 NA TTS (ENSMUSG00000021185.16) protein_coding-TTS (ENSMUSG00000021185.16) -8928 ENSMUSG00000021185.16 ENSMUSG00000021185 ENSMUST00000133970 Dglucy protein_coding Interval_173390 chrX 86443954 86444250 + 0 NA Intergenic Intergenic -37856 ENSMUSG00000065758.1 ENSMUSG00000065758 ENSMUST00000083824 n-R5s10 rRNA Interval_90573 chr2 31207166 31207387 + 0 NA exon (ENSMUSG00000000194.13, exon 1 of 2) protein_coding-exon (ENSMUSG00000000194.13, exon 1 of 2) 4071 ENSMUSG00000087430.1 ENSMUSG00000087430 ENSMUST00000146769 Gm13405 antisense Interval_92062 chr2 52945853 52947053 + 0 NA intron (ENSMUSG00000036053.17, intron 1 of 26) protein_coding-intron (ENSMUSG00000036053.17, intron 1 of 26) 88593 ENSMUSG00000036053.17 ENSMUSG00000036053 ENSMUST00000050719 Fmnl2 protein_coding Interval_82288 chr18 70193954 70194695 + 0 NA Intergenic Intergenic 50258 ENSMUSG00000024512.4 ENSMUSG00000024512 ENSMUST00000025390 Dynap protein_coding Interval_29023 chr11 79945074 79946681 + 0 NA intron (ENSMUSG00000035575.11, intron 12 of 19) protein_coding-intron (ENSMUSG00000035575.11, intron 12 of 18) 16490 ENSMUSG00000035575.11 ENSMUSG00000035575 ENSMUST00000146127 Utp6 protein_coding Interval_16628 chr10 66552965 66553554 + 0 NA Intergenic Intergenic 69706 ENSMUSG00000077439.1 ENSMUSG00000077439 ENSMUST00000104251 Gm22594 snoRNA Interval_84957 chr19 20239578 20240612 + 0 NA Intergenic Intergenic -116267 ENSMUSG00000118067.1 ENSMUSG00000118067 ENSMUST00000236458 Gm32629 lincRNA Interval_20068 chr10 113106285 113106552 + 0 NA Intergenic Intergenic -6971 ENSMUSG00000112228.1 ENSMUSG00000112228 ENSMUST00000220016 Gm47524 lincRNA Interval_39292 chr12 86498522 86499331 + 0 NA intron (ENSMUSG00000021255.17, intron 2 of 5) protein_coding-intron (ENSMUSG00000021255.17, intron 3 of 6) 28809 ENSMUSG00000021255.17 ENSMUSG00000021255 ENSMUST00000136464 Esrrb protein_coding Interval_97776 chr2 143973329 143973519 + 0 NA intron (ENSMUSG00000027422.15, intron 4 of 7) protein_coding-intron (ENSMUSG00000027422.15, intron 4 of 23) -15779 ENSMUSG00000027422.15 ENSMUSG00000027422 ENSMUST00000037875 Rrbp1 protein_coding Interval_125474 chr5 67435404 67435860 + 0 NA intron (ENSMUSG00000097840.1, intron 2 of 2) antisense-intron (ENSMUSG00000097840.1, intron 2 of 2) 7639 ENSMUSG00000106832.1 ENSMUSG00000106832 ENSMUST00000201707 Gm42632 TEC Interval_138865 chr6 92747667 92748123 + 0 NA Intergenic Intergenic -79737 ENSMUSG00000048636.7 ENSMUSG00000048636 ENSMUST00000133858 A730049H05Rik protein_coding Interval_20884 chr10 121733773 121734414 + 0 NA Intergenic Intergenic -16787 ENSMUSG00000053684.8 ENSMUSG00000053684 ENSMUST00000138630 BC048403 protein_coding Interval_121537 chr5 3305875 3306743 + 0 NA Intergenic Intergenic 35990 ENSMUSG00000106658.1 ENSMUSG00000106658 ENSMUST00000197473 Gm36548 lincRNA Interval_26197 chr11 55031188 55031763 + 0 NA intron (ENSMUSG00000018340.13, intron 1 of 19) protein_coding-intron (ENSMUSG00000018340.13, intron 1 of 24) 1940 ENSMUSG00000018340.13 ENSMUSG00000018340 ENSMUST00000148298 Anxa6 protein_coding Interval_142840 chr6 146352284 146352627 + 0 NA intron (ENSMUSG00000030287.15, intron 22 of 55) protein_coding-intron (ENSMUSG00000030287.15, intron 23 of 56) -23962 ENSMUSG00000107743.1 ENSMUSG00000107743 ENSMUST00000204247 Gm44087 TEC Interval_22785 chr11 15505479 15505895 + 0 NA Intergenic Intergenic 23381 ENSMUSG00000083292.1 ENSMUSG00000083292 ENSMUST00000122400 Gm12010 processed_pseudogene Interval_36205 chr12 39094280 39095502 + 0 NA intron (ENSMUSG00000113272.1, intron 2 of 3) lincRNA-intron (ENSMUSG00000113272.1, intron 2 of 3) 59870 ENSMUSG00000113272.1 ENSMUSG00000113272 ENSMUST00000220510 Gm34809 lincRNA Interval_91810 chr2 49775247 49776004 + 0 NA TTS (ENSMUSG00000026764.15) protein_coding-TTS (ENSMUSG00000026764.15) -12106 ENSMUSG00000026765.12 ENSMUSG00000026765 ENSMUST00000129867 Lypd6b protein_coding Interval_3650 chr1 60388663 60388872 + 0 NA TTS (ENSMUSG00000049439.13) protein_coding-TTS (ENSMUSG00000049439.13) -21014 ENSMUSG00000026782.15 ENSMUSG00000026782 ENSMUST00000190158 Abi2 protein_coding Interval_99963 chr2 166137601 166138648 + 0 NA intron (ENSMUSG00000006800.14, intron 1 of 20) protein_coding-intron (ENSMUSG00000006800.14, intron 1 of 20) 17539 ENSMUSG00000006800.14 ENSMUSG00000006800 ENSMUST00000133395 Sulf2 protein_coding Interval_30005 chr11 88644772 88646170 + 0 NA intron (ENSMUSG00000069769.13, intron 5 of 5) protein_coding-intron (ENSMUSG00000069769.13, intron 5 of 13) -55324 ENSMUSG00000069769.13 ENSMUSG00000069769 ENSMUST00000126293 Msi2 protein_coding Interval_92274 chr2 57901146 57901430 + 0 NA Intergenic Intergenic 84729 ENSMUSG00000110205.1 ENSMUSG00000110205 ENSMUST00000209502 Gm33594 lincRNA Interval_21395 chr10 128346980 128348130 + 0 NA intron (ENSMUSG00000005683.8, intron 1 of 10) protein_coding-intron (ENSMUSG00000005683.8, intron 1 of 10) -1686 ENSMUSG00000089313.2 ENSMUSG00000089313 ENSMUST00000158688 Gm23182 snoRNA Interval_146676 chr7 49342325 49343992 + 0 NA promoter-TSS (ENSMUSG00000052512.17) protein_coding-promoter-TSS (ENSMUSG00000052512.17) -316 ENSMUSG00000052512.17 ENSMUSG00000052512 ENSMUST00000183715 Nav2 protein_coding Interval_159460 chr8 94860185 94861605 + 0 NA promoter-TSS (ENSMUSG00000031783.10) protein_coding-promoter-TSS (ENSMUSG00000031783.10) -821 ENSMUSG00000031783.10 ENSMUSG00000031783 ENSMUST00000212848 Polr2c protein_coding Interval_63598 chr15 102262313 102262911 + 0 NA Intergenic Intergenic -7951 ENSMUSG00000097050.1 ENSMUSG00000097050 ENSMUST00000181801 Gm9918 protein_coding Interval_5858 chr1 92703475 92703894 + 0 NA Intergenic Intergenic 13518 ENSMUSG00000100546.1 ENSMUSG00000100546 ENSMUST00000188188 Gm29483 lincRNA Interval_132273 chr5 143872328 143872552 + 0 NA intron (ENSMUSG00000029613.15, intron 2 of 2) protein_coding-intron (ENSMUSG00000029613.15, intron 2 of 14) 25245 ENSMUSG00000029607.14 ENSMUSG00000029607 ENSMUST00000110718 Ankrd61 protein_coding Interval_67155 chr16 43973479 43975020 + 0 NA intron (ENSMUSG00000036304.14, intron 1 of 3) protein_coding-intron (ENSMUSG00000036304.14, intron 1 of 3) 4913 ENSMUSG00000036304.14 ENSMUSG00000036304 ENSMUST00000165648 Zdhhc23 protein_coding Interval_119904 chr4 140793329 140794678 + 0 NA intron (ENSMUSG00000025328.9, intron 8 of 14) protein_coding-intron (ENSMUSG00000025328.9, intron 9 of 15) 10019 ENSMUSG00000025328.9 ENSMUSG00000025328 ENSMUST00000172098 Padi3 protein_coding Interval_52446 chr14 46469191 46469392 + 0 NA Intergenic Intergenic -5771 ENSMUSG00000115296.1 ENSMUSG00000115296 ENSMUST00000227092 Gm48911 lincRNA Interval_52467 chr14 46754265 46755333 + 0 NA Intergenic Intergenic -5787 ENSMUSG00000037628.10 ENSMUSG00000037628 ENSMUST00000226621 Cdkn3 protein_coding Interval_128796 chr5 115313207 115313956 + 0 NA intron (ENSMUSG00000086368.2, intron 2 of 2) lincRNA-intron (ENSMUSG00000086368.2, intron 2 of 2) 12445 ENSMUSG00000086368.2 ENSMUSG00000086368 ENSMUST00000148916 Gm13830 lincRNA Interval_21697 chr11 3771243 3771640 + 0 NA intron (ENSMUSG00000020435.17, intron 2 of 2) protein_coding-intron (ENSMUSG00000020435.17, intron 2 of 13) 3291 ENSMUSG00000020435.17 ENSMUSG00000020435 ENSMUST00000135250 Osbp2 protein_coding Interval_69499 chr16 93890085 93891412 + 0 NA TTS (ENSMUSG00000116890.1) sense_intronic-TTS (ENSMUSG00000116890.1) -1993 ENSMUSG00000022945.12 ENSMUSG00000022945 ENSMUST00000128316 Chaf1b protein_coding Interval_13381 chr10 17592207 17593029 + 0 NA intron (ENSMUSG00000112629.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000112629.1, intron 1 of 2) -65704 ENSMUSG00000111927.1 ENSMUSG00000111927 ENSMUST00000220318 Gm47770 lincRNA Interval_149261 chr7 96772923 96773446 + 0 NA intron (ENSMUSG00000048078.16, intron 12 of 32) protein_coding-intron (ENSMUSG00000048078.16, intron 14 of 32) -23457 ENSMUSG00000048078.16 ENSMUSG00000048078 ENSMUST00000147659 Tenm4 protein_coding Interval_153273 chr7 143119282 143120398 + 0 NA intron (ENSMUSG00000009545.14, intron 1 of 1) protein_coding-intron (ENSMUSG00000009545.14, intron 1 of 15) -4729 ENSMUSG00000102980.1 ENSMUSG00000102980 ENSMUST00000195053 Gm38321 TEC Interval_14570 chr10 36125976 36126196 + 0 NA Intergenic Intergenic 30210 ENSMUSG00000110987.1 ENSMUSG00000110987 ENSMUST00000215218 Gm47048 processed_pseudogene Interval_148869 chr7 89483956 89484860 + 0 NA Intergenic Intergenic -25599 ENSMUSG00000030623.4 ENSMUSG00000030623 ENSMUST00000208814 Prss23os antisense Interval_71378 chr17 22817469 22818561 + 0 NA Intergenic Intergenic -10279 ENSMUSG00000117333.1 ENSMUSG00000117333 ENSMUST00000233975 Gm16386 processed_pseudogene Interval_36900 chr12 55060736 55061612 + 0 NA exon (ENSMUSG00000062198.5, exon 3 of 8) protein_coding-exon (ENSMUSG00000062198.5, exon 3 of 8) 5743 ENSMUSG00000113467.1 ENSMUSG00000113467 ENSMUST00000222661 Gm46350 processed_pseudogene Interval_10208 chr1 167212170 167212791 + 0 NA Intergenic Intergenic 24355 ENSMUSG00000026558.13 ENSMUSG00000026558 ENSMUST00000193579 Uck2 protein_coding Interval_90980 chr2 33894884 33895606 + 0 NA Intergenic Intergenic 46900 ENSMUSG00000085987.2 ENSMUSG00000085987 ENSMUST00000134271 Gm13403 lincRNA Interval_83853 chr19 5098153 5099031 + 0 NA promoter-TSS (ENSMUSG00000024873.7) protein_coding-promoter-TSS (ENSMUSG00000024873.7) -210 ENSMUSG00000024873.7 ENSMUSG00000024873 ENSMUST00000235638 Cnih2 protein_coding Interval_19031 chr10 93915401 93915764 + 0 NA TTS (ENSMUSG00000087798.1) snoRNA-TTS (ENSMUSG00000087798.1) 754 ENSMUSG00000087798.1 ENSMUSG00000087798 ENSMUST00000157173 Gm25962 snoRNA Interval_91257 chr2 36743571 36743959 + 0 NA Intergenic Intergenic 11863 ENSMUSG00000111863.2 ENSMUSG00000111863 ENSMUST00000078761 Olfr347 protein_coding Interval_160468 chr8 109759280 109760433 + 0 NA Intergenic Intergenic -27743 ENSMUSG00000069895.4 ENSMUSG00000069895 ENSMUST00000212726 Atxn1l protein_coding Interval_135238 chr6 37728744 37731129 + 0 NA Intergenic Intergenic -42741 ENSMUSG00000107035.1 ENSMUSG00000107035 ENSMUST00000201305 Ybx1-ps2 processed_pseudogene Interval_150431 chr7 110543223 110543957 + 0 NA intron (ENSMUSG00000038371.15, intron 2 of 18) protein_coding-intron (ENSMUSG00000038371.15, intron 2 of 40) 16798 ENSMUSG00000060777.4 ENSMUSG00000060777 ENSMUST00000167650 Gm10087 processed_pseudogene Interval_101800 chr3 9608584 9611748 + 0 NA promoter-TSS (ENSMUSG00000040209.12) protein_coding-promoter-TSS (ENSMUSG00000040209.12) -44867 ENSMUSG00000040209.12 ENSMUSG00000040209 ENSMUST00000192832 Zfp704 protein_coding Interval_111422 chr4 21505200 21506205 + 0 NA Intergenic Intergenic -120678 ENSMUSG00000083654.1 ENSMUSG00000083654 ENSMUST00000118187 Gm11875 processed_pseudogene Interval_146403 chr7 45704145 45707872 + 0 NA intron (ENSMUSG00000059824.12, intron 1 of 2) protein_coding-intron (ENSMUSG00000059824.12, intron 1 of 3) -1096 ENSMUSG00000059824.12 ENSMUSG00000059824 ENSMUST00000210120 Dbp protein_coding Interval_145315 chr7 32297637 32298346 + 0 NA Intergenic Intergenic 29254 ENSMUSG00000097982.1 ENSMUSG00000097982 ENSMUST00000183195 Scgb2b12 protein_coding Interval_37191 chr12 59325556 59325766 + 0 NA Intergenic Intergenic -7492 ENSMUSG00000112583.1 ENSMUSG00000112583 ENSMUST00000219926 Gm4930 processed_pseudogene Interval_100500 chr2 169694519 169695047 + 0 NA intron (ENSMUSG00000047907.11, intron 1 of 2) protein_coding-intron (ENSMUSG00000047907.11, intron 1 of 1) -66465 ENSMUSG00000103662.1 ENSMUSG00000103662 ENSMUST00000191912 Gm34294 TEC Interval_1703 chr1 31676464 31676696 + 0 NA Intergenic Intergenic -19842 ENSMUSG00000088620.1 ENSMUSG00000088620 ENSMUST00000157995 Gm23032 snRNA Interval_123081 chr5 29467540 29468615 + 0 NA Intergenic Intergenic 10393 ENSMUSG00000001566.9 ENSMUSG00000001566 ENSMUST00000001608 Mnx1 protein_coding Interval_107148 chr3 103920131 103920379 + 0 NA intron (ENSMUSG00000044098.14, intron 1 of 7) protein_coding-intron (ENSMUSG00000044098.14, intron 1 of 7) -8363 ENSMUSG00000044098.14 ENSMUSG00000044098 ENSMUST00000185731 Rsbn1 protein_coding Interval_87349 chr19 47876082 47876768 + 0 NA exon (ENSMUSG00000025069.15, exon 7 of 9) protein_coding-exon (ENSMUSG00000025069.15, exon 7 of 9) 10599 ENSMUSG00000025069.15 ENSMUSG00000025069 ENSMUST00000135016 Gsto2 protein_coding Interval_96149 chr2 120068693 120070200 + 0 NA intron (ENSMUSG00000074899.6, intron 18 of 65) protein_coding-intron (ENSMUSG00000074899.6, intron 18 of 65) 16232 ENSMUSG00000074899.6 ENSMUSG00000074899 ENSMUST00000156159 Sptbn5 protein_coding Interval_17318 chr10 75835335 75835693 + 0 NA promoter-TSS (ENSMUSG00000033318.7) protein_coding-promoter-TSS (ENSMUSG00000033318.7) 1853 ENSMUSG00000033318.7 ENSMUSG00000033318 ENSMUST00000218745 Gstt2 protein_coding Interval_11854 chr1 186350137 186350862 + 0 NA Intergenic Intergenic 3184 ENSMUSG00000102217.1 ENSMUSG00000102217 ENSMUST00000192552 Gm37491 TEC Interval_117777 chr4 126177656 126177966 + 0 NA TTS (ENSMUSG00000043962.16) protein_coding-TTS (ENSMUSG00000043962.16) 2336 ENSMUSG00000043962.16 ENSMUSG00000043962 ENSMUST00000124327 Thrap3 protein_coding Interval_162926 chr9 13469590 13470120 + 0 NA intron (ENSMUSG00000031925.17, intron 1 of 4) protein_coding-intron (ENSMUSG00000031925.17, intron 1 of 4) -23102 ENSMUSG00000090592.2 ENSMUSG00000090592 ENSMUST00000167906 Gm17571 protein_coding Interval_173770 chrX 103937557 103937756 + 0 NA Intergenic Intergenic -10672 ENSMUSG00000081689.1 ENSMUSG00000081689 ENSMUST00000120293 Gm9166 processed_pseudogene Interval_18043 chr10 81513566 81513939 + 0 NA intron (ENSMUSG00000034792.8, intron 2 of 6) protein_coding-intron (ENSMUSG00000034792.8, intron 2 of 6) -1113 ENSMUSG00000034792.8 ENSMUSG00000034792 ENSMUST00000150586 Gna15 protein_coding Interval_57225 chr15 7974147 7975646 + 0 NA promoter-TSS (ENSMUSG00000098281.1) miRNA-promoter-TSS (ENSMUSG00000098281.1) -179 ENSMUSG00000116090.1 ENSMUSG00000116090 ENSMUST00000229131 Rpl19-ps6 processed_pseudogene Interval_165606 chr9 50292524 50292821 + 0 NA Intergenic Intergenic 9145 ENSMUSG00000111359.1 ENSMUSG00000111359 ENSMUST00000214933 Gm39336 lincRNA Interval_52404 chr14 45657004 45658646 + 0 NA promoter-TSS (ENSMUSG00000037697.19) protein_coding-promoter-TSS (ENSMUSG00000037697.19) 228 ENSMUSG00000093167.1 ENSMUSG00000093167 ENSMUST00000175426 Mir5131 miRNA Interval_124868 chr5 57733082 57733946 + 0 NA intron (ENSMUSG00000029108.14, intron 1 of 1) protein_coding-intron (ENSMUSG00000029108.14, intron 1 of 2) 9121 ENSMUSG00000105940.1 ENSMUSG00000105940 ENSMUST00000200266 Gm42635 TEC Interval_108273 chr3 123202544 123203096 + 0 NA intron (ENSMUSG00000050315.14, intron 1 of 1) protein_coding-intron (ENSMUSG00000050315.14, intron 1 of 4) 9127 ENSMUSG00000106490.1 ENSMUSG00000106490 ENSMUST00000199138 Gm43283 TEC Interval_63740 chr15 103176968 103178455 + 0 NA Intergenic Intergenic -14393 ENSMUSG00000036061.10 ENSMUSG00000036061 ENSMUST00000230529 Smug1 protein_coding Interval_57762 chr15 19160778 19161441 + 0 NA Intergenic Intergenic -24264 ENSMUSG00000115803.1 ENSMUSG00000115803 ENSMUST00000226343 Gm35496 lincRNA Interval_129038 chr5 117031784 117032586 + 0 NA Intergenic Intergenic -26627 ENSMUSG00000107327.1 ENSMUSG00000107327 ENSMUST00000201054 Gm7478 processed_pseudogene Interval_111709 chr4 26444873 26445391 + 0 NA Intergenic Intergenic 2671 ENSMUSG00000082573.1 ENSMUSG00000082573 ENSMUST00000118958 Gm11903 processed_pseudogene Interval_72440 chr17 29819936 29820182 + 0 NA promoter-TSS (ENSMUSG00000117489.1) lincRNA-promoter-TSS (ENSMUSG00000117489.1) -672 ENSMUSG00000117489.1 ENSMUSG00000117489 ENSMUST00000234919 Gm50016 lincRNA Interval_6959 chr1 121389346 121389996 + 0 NA Intergenic Intergenic -29771 ENSMUSG00000101791.1 ENSMUSG00000101791 ENSMUST00000190690 2210011K15Rik lincRNA Interval_63384 chr15 100736161 100736664 + 0 NA Intergenic Intergenic -3675 ENSMUSG00000116504.1 ENSMUSG00000116504 ENSMUST00000230334 I730030J21Rik processed_transcript Interval_135948 chr6 49039682 49040047 + 0 NA intron (ENSMUSG00000029816.10, intron 1 of 10) protein_coding-intron (ENSMUSG00000029816.10, intron 1 of 10) 3318 ENSMUSG00000029816.10 ENSMUSG00000029816 ENSMUST00000204460 Gpnmb protein_coding Interval_17577 chr10 77886150 77886583 + 0 NA intron (ENSMUSG00000069581.12, intron 9 of 9) protein_coding-intron (ENSMUSG00000069581.12, intron 11 of 11) -7062 ENSMUSG00000096573.2 ENSMUSG00000096573 ENSMUST00000185513 1700009J07Rik lincRNA Interval_153537 chr8 3292401 3293047 + 0 NA Intergenic Intergenic 33020 ENSMUSG00000086065.1 ENSMUSG00000086065 ENSMUST00000128662 Gm16180 antisense Interval_55935 chr14 102956892 102957136 + 0 NA Intergenic Intergenic 25618 ENSMUSG00000092901.1 ENSMUSG00000092901 ENSMUST00000175160 Mir5130 miRNA Interval_69334 chr16 92293479 92294829 + 0 NA intron (ENSMUSG00000039672.12, intron 1 of 1) protein_coding-intron (ENSMUSG00000039672.12, intron 1 of 1) -1462 ENSMUSG00000039672.12 ENSMUSG00000039672 ENSMUST00000113971 Kcne2 protein_coding Interval_139884 chr6 112374026 112374836 + 0 NA intron (ENSMUSG00000034387.13, intron 11 of 11) protein_coding-intron (ENSMUSG00000034387.13, intron 11 of 11) 13587 ENSMUSG00000034387.13 ENSMUSG00000034387 ENSMUST00000238755 Ssu2 protein_coding Interval_97923 chr2 145794468 145795313 + 0 NA intron (ENSMUSG00000001768.16, intron 1 of 2) protein_coding-intron (ENSMUSG00000001768.16, intron 2 of 12) -83396 ENSMUSG00000092758.1 ENSMUSG00000092758 ENSMUST00000175017 Gm25026 miRNA Interval_137731 chr6 81890149 81890572 + 0 NA Intergenic Intergenic 4979 ENSMUSG00000108194.1 ENSMUSG00000108194 ENSMUST00000204079 1700097M23Rik TEC Interval_119767 chr4 139823638 139824289 + 0 NA intron (ENSMUSG00000028736.13, intron 4 of 8) protein_coding-intron (ENSMUSG00000028736.13, intron 4 of 8) 9044 ENSMUSG00000028736.13 ENSMUSG00000028736 ENSMUST00000174681 Pax7 protein_coding Interval_50167 chr14 8450746 8451665 + 0 NA intron (ENSMUSG00000021747.12, intron 14 of 15) protein_coding-intron (ENSMUSG00000021747.12, intron 14 of 15) 42288 ENSMUSG00000114533.1 ENSMUSG00000114533 ENSMUST00000224382 Gm8416 processed_pseudogene Interval_45455 chr13 55249172 55249822 + 0 NA intron (ENSMUSG00000021488.8, intron 3 of 20) protein_coding-intron (ENSMUSG00000021488.8, intron 5 of 22) 4904 ENSMUSG00000114359.1 ENSMUSG00000114359 ENSMUST00000224833 Gm47816 processed_pseudogene Interval_37449 chr12 69046049 69046403 + 0 NA Intergenic Intergenic -51256 ENSMUSG00000113320.1 ENSMUSG00000113320 ENSMUST00000221589 Gm47515 lincRNA Interval_29455 chr11 84101365 84102420 + 0 NA intron (ENSMUSG00000018651.14, intron 8 of 15) protein_coding-intron (ENSMUSG00000018651.14, intron 8 of 15) -18936 ENSMUSG00000018651.14 ENSMUSG00000018651 ENSMUST00000134994 Tada2a protein_coding Interval_81097 chr18 53868066 53868298 + 0 NA intron (ENSMUSG00000073563.3, intron 1 of 12) protein_coding-intron (ENSMUSG00000073563.3, intron 1 of 12) 5994 ENSMUSG00000073563.3 ENSMUSG00000073563 ENSMUST00000236399 Csnk1g3 protein_coding Interval_135222 chr6 37641727 37643160 + 0 NA Intergenic Intergenic 44752 ENSMUSG00000107035.1 ENSMUSG00000107035 ENSMUST00000201305 Ybx1-ps2 processed_pseudogene Interval_171075 chr9 114399513 114402050 + 0 NA promoter-TSS (ENSMUSG00000045594.10) protein_coding-promoter-TSS (ENSMUSG00000045594.10) -324 ENSMUSG00000079260.3 ENSMUSG00000079260 ENSMUST00000111820 Tmppe protein_coding Interval_140681 chr6 120530816 120531865 + 0 NA promoter-TSS (ENSMUSG00000058979.7) protein_coding-promoter-TSS (ENSMUSG00000058979.7) -38 ENSMUSG00000058979.7 ENSMUSG00000058979 ENSMUST00000204390 Hdhd5 protein_coding Interval_61143 chr15 79481052 79481810 + 0 NA exon (ENSMUSG00000116081.1, exon 1 of 1) TEC-exon (ENSMUSG00000116081.1, exon 1 of 1) 1243 ENSMUSG00000116081.1 ENSMUSG00000116081 ENSMUST00000229365 Gm49593 TEC Interval_133343 chr6 3517665 3517982 + 0 NA promoter-TSS (ENSMUSG00000001376.17) protein_coding-promoter-TSS (ENSMUSG00000001376.17) -30394 ENSMUSG00000044156.14 ENSMUSG00000044156 ENSMUST00000200972 Hepacam2 protein_coding Interval_170503 chr9 108333690 108333914 + 0 NA intron (ENSMUSG00000007815.13, intron 4 of 5) protein_coding-intron (ENSMUSG00000007815.13, intron 4 of 5) 2556 ENSMUSG00000102554.1 ENSMUSG00000102554 ENSMUST00000191755 Gm37568 processed_pseudogene Interval_46316 chr13 63900848 63902765 + 0 NA Intergenic Intergenic 40724 ENSMUSG00000114095.1 ENSMUSG00000114095 ENSMUST00000221964 Gm47424 sense_intronic Interval_42879 chr13 20983506 20983677 + 0 NA intron (ENSMUSG00000021322.8, intron 13 of 20) protein_coding-intron (ENSMUSG00000021322.8, intron 13 of 20) 91356 ENSMUSG00000042869.2 ENSMUSG00000042869 ENSMUST00000058168 Olfr1370 protein_coding Interval_10846 chr1 175920739 175921132 + 0 NA exon (ENSMUSG00000104158.2, exon 1 of 1) protein_coding-exon (ENSMUSG00000104158.2, exon 1 of 1) 606 ENSMUSG00000104158.2 ENSMUSG00000104158 ENSMUST00000194391 Gm38100 protein_coding Interval_112137 chr4 34900206 34900681 + 0 NA intron (ENSMUSG00000028298.10, intron 2 of 4) protein_coding-intron (ENSMUSG00000028298.10, intron 1 of 3) 6655 ENSMUSG00000028298.10 ENSMUSG00000028298 ENSMUST00000108130 Cga protein_coding Interval_109002 chr3 134562521 134562722 + 0 NA intron (ENSMUSG00000097031.2, intron 2 of 2) lincRNA-intron (ENSMUSG00000097031.2, intron 2 of 2) 68144 ENSMUSG00000097031.2 ENSMUSG00000097031 ENSMUST00000180764 Gm26820 lincRNA Interval_120606 chr4 149654186 149654779 + 0 NA intron (ENSMUSG00000039936.18, intron 15 of 22) protein_coding-intron (ENSMUSG00000039936.18, intron 16 of 23) 1085 ENSMUSG00000098580.1 ENSMUSG00000098580 ENSMUST00000185093 Mir7023 miRNA Interval_50187 chr14 8992636 8993887 + 0 NA Intergenic Intergenic -67081 ENSMUSG00000114464.1 ENSMUSG00000114464 ENSMUST00000225474 Gm18071 processed_pseudogene Interval_173891 chrX 107498730 107499426 + 0 NA Intergenic Intergenic -43504 ENSMUSG00000055700.7 ENSMUSG00000055700 ENSMUST00000139758 4933401B06Rik transcribed_processed_pseudogene Interval_173029 chrX 65863820 65864169 + 0 NA Intergenic Intergenic -72355 ENSMUSG00000083243.1 ENSMUSG00000083243 ENSMUST00000118588 Gm14668 processed_pseudogene Interval_165235 chr9 45611826 45612047 + 0 NA intron (ENSMUSG00000032087.11, intron 3 of 32) protein_coding-intron (ENSMUSG00000032087.11, intron 3 of 32) 22876 ENSMUSG00000096202.1 ENSMUSG00000096202 ENSMUST00000179911 Gm22069 snRNA Interval_2245 chr1 37319310 37319547 + 0 NA intron (ENSMUSG00000026113.17, intron 1 of 25) protein_coding-intron (ENSMUSG00000026113.17, intron 1 of 25) 12076 ENSMUSG00000102879.1 ENSMUSG00000102879 ENSMUST00000192652 Gm37135 TEC Interval_145220 chr7 30758909 30759238 + 0 NA Intergenic Intergenic -5984 ENSMUSG00000060962.12 ENSMUSG00000060962 ENSMUST00000041703 Dmkn protein_coding Interval_19322 chr10 96673503 96674392 + 0 NA Intergenic Intergenic -37860 ENSMUSG00000112362.1 ENSMUSG00000112362 ENSMUST00000219424 Gm48507 processed_pseudogene Interval_127057 chr5 99999709 100001070 + 0 NA Intergenic Intergenic -21451 ENSMUSG00000000568.15 ENSMUSG00000000568 ENSMUST00000170912 Hnrnpd protein_coding Interval_49378 chr13 111560681 111562195 + 0 NA TTS (ENSMUSG00000086870.1) antisense-TTS (ENSMUSG00000086870.1) 7115 ENSMUSG00000086870.1 ENSMUSG00000086870 ENSMUST00000126640 Gm15288 antisense Interval_14746 chr10 39553035 39553233 + 0 NA intron (ENSMUSG00000019843.14, intron 12 of 12) protein_coding-intron (ENSMUSG00000019843.14, intron 13 of 13) 4928 ENSMUSG00000087014.1 ENSMUSG00000087014 ENSMUST00000153722 Gm16364 antisense Interval_42755 chr13 19101685 19101952 + 0 NA TTS (ENSMUSG00000021314.13) protein_coding-TTS (ENSMUSG00000021314.13) -30243 ENSMUSG00000113378.1 ENSMUSG00000113378 ENSMUST00000220695 Gm47660 processed_pseudogene Interval_40349 chr12 104066295 104066502 + 0 NA Intergenic Intergenic -14251 ENSMUSG00000092075.1 ENSMUSG00000092075 ENSMUST00000166601 Serpina4-ps1 unprocessed_pseudogene Interval_121711 chr5 5573614 5575219 + 0 NA intron (ENSMUSG00000073234.4, intron 1 of 1) protein_coding-intron (ENSMUSG00000073234.4, intron 1 of 1) 617 ENSMUSG00000073234.4 ENSMUSG00000073234 ENSMUST00000101627 Gm8773 protein_coding Interval_132530 chr5 145796807 145797369 + 0 NA intron (ENSMUSG00000054417.5, intron 4 of 12) protein_coding-intron (ENSMUSG00000054417.5, intron 4 of 12) 8786 ENSMUSG00000054417.5 ENSMUSG00000054417 ENSMUST00000067479 Cyp3a44 protein_coding Interval_77933 chr18 5750658 5751163 + 0 NA intron (ENSMUSG00000024238.15, intron 5 of 5) protein_coding-intron (ENSMUSG00000024238.15, intron 3 of 7) 136437 ENSMUSG00000080543.1 ENSMUSG00000080543 ENSMUST00000116893 Gm22709 miRNA Interval_58486 chr15 35155226 35156067 + 0 NA promoter-TSS (ENSMUSG00000022329.15) protein_coding-promoter-TSS (ENSMUSG00000022329.15) -45158 ENSMUSG00000115345.1 ENSMUSG00000115345 ENSMUST00000228112 Gm33497 lincRNA Interval_48014 chr13 95221977 95223586 + 0 NA promoter-TSS (ENSMUSG00000021684.17) protein_coding-promoter-TSS (ENSMUSG00000021684.17) 32 ENSMUSG00000021684.17 ENSMUSG00000021684 ENSMUST00000162716 Pde8b protein_coding Interval_9087 chr1 153501715 153502736 + 0 NA TTS (ENSMUSG00000042684.8) protein_coding-TTS (ENSMUSG00000042684.8) -24086 ENSMUSG00000042699.11 ENSMUSG00000042699 ENSMUST00000189425 Dhx9 protein_coding Interval_61451 chr15 81708701 81709683 + 0 NA TTS (ENSMUSG00000022391.16) protein_coding-TTS (ENSMUSG00000022391.16) -13657 ENSMUSG00000063765.12 ENSMUSG00000063765 ENSMUST00000230849 Chadl protein_coding Interval_148031 chr7 78566873 78567087 + 0 NA intron (ENSMUSG00000108390.1, intron 1 of 1) protein_coding-intron (ENSMUSG00000059146.12, intron 1 of 16) 8252 ENSMUSG00000108390.1 ENSMUSG00000108390 ENSMUST00000206774 Gm39038 sense_intronic Interval_172713 chrX 46977244 46977616 + 0 NA Intergenic Intergenic -203331 ENSMUSG00000101233.1 ENSMUSG00000101233 ENSMUST00000186570 Gm29242 lincRNA Interval_20739 chr10 120666629 120668180 + 0 NA promoter-TSS (ENSMUSG00000103213.1) TEC-promoter-TSS (ENSMUSG00000103213.1) -387 ENSMUSG00000103213.1 ENSMUSG00000103213 ENSMUST00000194273 Gm38289 TEC Interval_2446 chr1 39417663 39418179 + 0 NA intron (ENSMUSG00000003134.10, intron 2 of 18) protein_coding-intron (ENSMUSG00000003134.10, intron 2 of 19) 2011 ENSMUSG00000102607.1 ENSMUSG00000102607 ENSMUST00000191698 Gm37265 TEC Interval_112144 chr4 34928158 34928749 + 0 NA Intergenic Intergenic 9324 ENSMUSG00000083956.1 ENSMUSG00000083956 ENSMUST00000119806 Gm12361 processed_pseudogene Interval_31867 chr11 103456642 103457533 + 0 NA exon (ENSMUSG00000078632.4, exon 9 of 14) protein_coding-exon (ENSMUSG00000078632.4, exon 9 of 14) 35351 ENSMUSG00000110636.1 ENSMUSG00000110636 ENSMUST00000212331 Gm39397 lincRNA Interval_130918 chr5 134050916 134051188 + 0 NA Intergenic Intergenic 40399 ENSMUSG00000106800.1 ENSMUSG00000106800 ENSMUST00000202497 1700030N18Rik TEC Interval_18084 chr10 82177871 82178991 + 0 NA promoter-TSS (ENSMUSG00000112110.1) lincRNA-promoter-TSS (ENSMUSG00000112110.1) 59 ENSMUSG00000112110.1 ENSMUSG00000112110 ENSMUST00000217860 Gm15608 lincRNA Interval_132911 chr5 148708366 148708808 + 0 NA Intergenic Intergenic -2879 ENSMUSG00000106733.1 ENSMUSG00000106733 ENSMUST00000200820 Gm36186 lincRNA Interval_122418 chr5 22425116 22426567 + 0 NA Intergenic Intergenic 4602 ENSMUSG00000065660.1 ENSMUSG00000065660 ENSMUST00000083726 n-R5s170 rRNA Interval_159697 chr8 98167929 98168371 + 0 NA Intergenic Intergenic 29365 ENSMUSG00000109681.1 ENSMUSG00000109681 ENSMUST00000211801 Gm17997 processed_pseudogene Interval_50831 chr14 20113556 20114528 + 0 NA intron (ENSMUSG00000045107.5, intron 1 of 1) protein_coding-intron (ENSMUSG00000045107.5, intron 1 of 1) 24492 ENSMUSG00000045107.5 ENSMUSG00000045107 ENSMUST00000226090 Saysd1 protein_coding Interval_40521 chr12 105467154 105468970 + 0 NA intron (ENSMUSG00000094910.1, intron 1 of 1) protein_coding-intron (ENSMUSG00000094910.1, intron 1 of 1) 14206 ENSMUSG00000094910.1 ENSMUSG00000094910 ENSMUST00000178224 D430019H16Rik protein_coding Interval_112322 chr4 40472391 40474499 + 0 NA exon (ENSMUSG00000046593.3, exon 1 of 2) protein_coding-exon (ENSMUSG00000046593.3, exon 1 of 2) 315 ENSMUSG00000046593.3 ENSMUSG00000046593 ENSMUST00000179526 Tmem215 protein_coding Interval_25815 chr11 51892267 51892899 + 0 NA Intergenic Intergenic -6383 ENSMUSG00000110618.1 ENSMUSG00000110618 ENSMUST00000212253 Gm39822 lincRNA Interval_34361 chr12 3605305 3606867 + 0 NA intron (ENSMUSG00000071454.13, intron 4 of 17) protein_coding-intron (ENSMUSG00000071454.13, intron 4 of 17) 33616 ENSMUSG00000071454.13 ENSMUSG00000071454 ENSMUST00000174293 Dtnb protein_coding Interval_148709 chr7 84424904 84425724 + 0 NA Intergenic Intergenic 13912 ENSMUSG00000108864.1 ENSMUSG00000108864 ENSMUST00000208637 Gm44933 lincRNA Interval_40289 chr12 103192855 103193227 + 0 NA Intergenic Intergenic 49087 ENSMUSG00000041669.15 ENSMUSG00000041669 ENSMUST00000155547 Prima1 protein_coding Interval_130607 chr5 129169449 129169911 + 0 NA intron (ENSMUSG00000044017.16, intron 14 of 24) protein_coding-intron (ENSMUSG00000044017.16, intron 15 of 25) -41163 ENSMUSG00000060419.8 ENSMUSG00000060419 ENSMUST00000140155 Rps16-ps2 processed_pseudogene Interval_15950 chr10 59568917 59569327 + 0 NA intron (ENSMUSG00000009647.13, intron 3 of 3) protein_coding-intron (ENSMUSG00000009647.13, intron 1 of 7) -46942 ENSMUSG00000071280.2 ENSMUSG00000071280 ENSMUST00000238281 Gm10322 antisense Interval_29497 chr11 84453522 84453731 + 0 NA intron (ENSMUSG00000018697.14, intron 5 of 8) protein_coding-intron (ENSMUSG00000018697.14, intron 9 of 12) 59896 ENSMUSG00000018697.14 ENSMUSG00000018697 ENSMUST00000148434 Aatf protein_coding Interval_116134 chr4 108015101 108015666 + 0 NA exon (ENSMUSG00000028600.15, exon 12 of 12) protein_coding-exon (ENSMUSG00000028600.15, exon 12 of 12) 15603 ENSMUSG00000028600.15 ENSMUSG00000028600 ENSMUST00000124265 Podn protein_coding Interval_63525 chr15 101765994 101766263 + 0 NA Intergenic Intergenic -2690 ENSMUSG00000067596.4 ENSMUSG00000067596 ENSMUST00000229279 Krt74 transcribed_unitary_pseudogene Interval_137995 chr6 84050438 84051698 + 0 NA intron (ENSMUSG00000033788.15, intron 3 of 55) protein_coding-intron (ENSMUSG00000033788.15, intron 3 of 54) 19480 ENSMUSG00000108142.1 ENSMUSG00000108142 ENSMUST00000203282 Gm7498 processed_pseudogene Interval_4474 chr1 74422947 74423198 + 0 NA promoter-TSS (ENSMUSG00000026175.12) protein_coding-promoter-TSS (ENSMUSG00000026175.12) -614 ENSMUSG00000026175.12 ENSMUSG00000026175 ENSMUST00000163018 Vil1 protein_coding Interval_173850 chrX 105956734 105957500 + 0 NA Intergenic Intergenic 54782 ENSMUSG00000031232.17 ENSMUSG00000031232 ENSMUST00000139421 Magt1 protein_coding Interval_80231 chr18 38418403 38419599 + 0 NA promoter-TSS (ENSMUSG00000024425.4) protein_coding-promoter-TSS (ENSMUSG00000024425.4) -5717 ENSMUSG00000117986.1 ENSMUSG00000117986 ENSMUST00000235696 Gm50344 processed_pseudogene Interval_114117 chr4 63579898 63580524 + 0 NA intron (ENSMUSG00000045917.17, intron 8 of 9) protein_coding-intron (ENSMUSG00000045917.17, intron 8 of 9) -12443 ENSMUSG00000065913.1 ENSMUSG00000065913 ENSMUST00000083979 Gm24448 snRNA Interval_67021 chr16 40718226 40718735 + 0 NA intron (ENSMUSG00000061080.11, intron 1 of 1) protein_coding-intron (ENSMUSG00000061080.11, intron 1 of 8) 348096 ENSMUSG00000099168.1 ENSMUSG00000099168 ENSMUST00000183933 Gm27717 misc_RNA Interval_20578 chr10 119163027 119163529 + 0 NA intron (ENSMUSG00000112161.1, intron 1 of 5) lincRNA-intron (ENSMUSG00000112161.1, intron 1 of 5) 3107 ENSMUSG00000112161.1 ENSMUSG00000112161 ENSMUST00000217700 Gm34045 lincRNA Interval_105071 chr3 80963071 80964144 + 0 NA exon (ENSMUSG00000105092.1, exon 2 of 3) lincRNA-exon (ENSMUSG00000105092.1, exon 2 of 3) 647 ENSMUSG00000105092.1 ENSMUSG00000105092 ENSMUST00000200360 Gm42468 lincRNA Interval_28132 chr11 73047421 73048536 + 0 NA exon (ENSMUSG00000020783.14, exon 1 of 13) protein_coding-exon (ENSMUSG00000020783.14, exon 1 of 13) 105 ENSMUSG00000020783.14 ENSMUSG00000020783 ENSMUST00000151823 Ncbp3 protein_coding Interval_101019 chr2 174283522 174285455 + 0 NA promoter-TSS (ENSMUSG00000027523.20) protein_coding-promoter-TSS (ENSMUSG00000027523.20) -2120 ENSMUSG00000099106.1 ENSMUSG00000099106 ENSMUST00000184715 Gm27899 misc_RNA Interval_108868 chr3 132855400 132855614 + 0 NA intron (ENSMUSG00000106230.1, intron 1 of 3) lincRNA-intron (ENSMUSG00000106230.1, intron 1 of 3) 13111 ENSMUSG00000106499.1 ENSMUSG00000106499 ENSMUST00000196299 Gm9403 processed_pseudogene Interval_83805 chr19 4787230 4788200 + 0 NA TTS (ENSMUSG00000094936.8) protein_coding-TTS (ENSMUSG00000094936.8) 6165 ENSMUSG00000094936.8 ENSMUSG00000094936 ENSMUST00000179820 Rbm4 protein_coding Interval_94760 chr2 94054584 94055330 + 0 NA intron (ENSMUSG00000027195.10, intron 3 of 7) protein_coding-intron (ENSMUSG00000027195.10, intron 6 of 10) 11807 ENSMUSG00000027195.10 ENSMUSG00000027195 ENSMUST00000141955 Hsd17b12 protein_coding Interval_146068 chr7 43642960 43643682 + 0 NA intron (ENSMUSG00000030472.9, intron 4 of 5) protein_coding-intron (ENSMUSG00000030472.9, intron 4 of 5) 8614 ENSMUSG00000030472.9 ENSMUSG00000030472 ENSMUST00000032663 Ceacam18 protein_coding Interval_33767 chr11 118372312 118373202 + 0 NA Intergenic Intergenic -17017 ENSMUSG00000017466.9 ENSMUSG00000017466 ENSMUST00000155707 Timp2 protein_coding Interval_108900 chr3 133140501 133141260 + 0 NA exon (ENSMUSG00000040969.14, exon 9 of 14) protein_coding-exon (ENSMUSG00000040969.14, exon 9 of 14) 40493 ENSMUSG00000028016.9 ENSMUSG00000028016 ENSMUST00000160669 Ints12 protein_coding Interval_110274 chr3 155355513 155355738 + 0 NA Intergenic Intergenic -78902 ENSMUSG00000103511.1 ENSMUSG00000103511 ENSMUST00000193089 Gm5285 processed_pseudogene Interval_88759 chr2 10353515 10354579 + 0 NA intron (ENSMUSG00000086748.1, intron 1 of 3) processed_transcript-intron (ENSMUSG00000086748.1, intron 1 of 3) -18401 ENSMUSG00000061186.15 ENSMUSG00000061186 ENSMUST00000041105 Sfmbt2 protein_coding Interval_42350 chr13 12277312 12277850 + 0 NA intron (ENSMUSG00000052374.16, intron 16 of 21) protein_coding-intron (ENSMUSG00000052374.16, intron 15 of 20) -3485 ENSMUSG00000052374.16 ENSMUSG00000052374 ENSMUST00000110616 Actn2 protein_coding Interval_22169 chr11 6768573 6769362 + 0 NA Intergenic Intergenic 14171 ENSMUSG00000083819.1 ENSMUSG00000083819 ENSMUST00000118511 Gm11977 processed_pseudogene Interval_68195 chr16 67619788 67621449 + 0 NA promoter-TSS (ENSMUSG00000064115.13) protein_coding-promoter-TSS (ENSMUSG00000064115.13) -27392 ENSMUSG00000082823.3 ENSMUSG00000082823 ENSMUST00000119911 Gm15828 processed_pseudogene Interval_5318 chr1 87524785 87525395 + 0 NA intron (ENSMUSG00000079434.8, intron 1 of 2) protein_coding-intron (ENSMUSG00000026259.14, intron 3 of 14) 10915 ENSMUSG00000091123.1 ENSMUSG00000091123 ENSMUST00000168856 Gm17181 processed_pseudogene Interval_163032 chr9 14680197 14681094 + 0 NA TTS (ENSMUSG00000111330.1) processed_pseudogene-TTS (ENSMUSG00000111330.1) 675 ENSMUSG00000111330.1 ENSMUSG00000111330 ENSMUST00000214414 Gm19790 processed_pseudogene Interval_49342 chr13 111366801 111367156 + 0 NA intron (ENSMUSG00000086201.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000086201.1, intron 1 of 2) 1702 ENSMUSG00000086201.1 ENSMUSG00000086201 ENSMUST00000132731 Gm6270 lincRNA Interval_144930 chr7 28969318 28970351 + 0 NA Intergenic Intergenic 5002 ENSMUSG00000053565.10 ENSMUSG00000053565 ENSMUST00000208707 Eif3k protein_coding Interval_67889 chr16 58717673 58718177 + 0 NA TTS (ENSMUSG00000022742.6) protein_coding-TTS (ENSMUSG00000022742.6) 1145 ENSMUSG00000047293.7 ENSMUSG00000047293 ENSMUST00000089318 Gpr15 protein_coding Interval_134372 chr6 27181263 27181656 + 0 NA Intergenic Intergenic 262494 ENSMUSG00000107377.1 ENSMUSG00000107377 ENSMUST00000202562 Gm42801 TEC Interval_50610 chr14 16559558 16559763 + 0 NA intron (ENSMUSG00000017491.9, intron 1 of 1) protein_coding-intron (ENSMUSG00000017491.9, intron 1 of 7) -15941 ENSMUSG00000114463.1 ENSMUSG00000114463 ENSMUST00000224418 Gm48162 antisense Interval_141952 chr6 135826490 135828214 + 0 NA intron (ENSMUSG00000030209.14, intron 6 of 14) protein_coding-intron (ENSMUSG00000030209.14, intron 5 of 13) -48153 ENSMUSG00000086614.2 ENSMUSG00000086614 ENSMUST00000155455 Gm14330 antisense Interval_88991 chr2 14073330 14074871 + 0 NA promoter-TSS (ENSMUSG00000026718.17) protein_coding-promoter-TSS (ENSMUSG00000026718.17) -122 ENSMUSG00000026718.17 ENSMUSG00000026718 ENSMUST00000131734 Stam protein_coding Interval_168061 chr9 75780712 75781581 + 0 NA intron (ENSMUSG00000032179.7, intron 1 of 6) protein_coding-intron (ENSMUSG00000032179.7, intron 1 of 6) -46876 ENSMUSG00000032179.7 ENSMUSG00000032179 ENSMUST00000137213 Bmp5 protein_coding Interval_109529 chr3 144134364 144135901 + 0 NA intron (ENSMUSG00000106367.1, intron 1 of 4) lincRNA-intron (ENSMUSG00000106367.1, intron 1 of 4) 622 ENSMUSG00000106367.1 ENSMUSG00000106367 ENSMUST00000198202 Gm34078 lincRNA Interval_40529 chr12 105527880 105528142 + 0 NA Intergenic Intergenic 14531 ENSMUSG00000113535.1 ENSMUSG00000113535 ENSMUST00000223443 AU015791 lincRNA Interval_68625 chr16 81752861 81753333 + 0 NA Intergenic Intergenic -39119 ENSMUSG00000116803.1 ENSMUSG00000116803 ENSMUST00000231467 Gm49558 processed_pseudogene Interval_1301 chr1 19398581 19399441 + 0 NA Intergenic Intergenic 68072 ENSMUSG00000100204.1 ENSMUSG00000100204 ENSMUST00000188428 Gm4849 processed_pseudogene Interval_21947 chr11 5374617 5374847 + 0 NA intron (ENSMUSG00000041961.14, intron 1 of 8) protein_coding-intron (ENSMUSG00000041961.14, intron 1 of 8) 7008 ENSMUSG00000041961.14 ENSMUSG00000041961 ENSMUST00000143746 Znrf3 protein_coding Interval_88223 chr19 60799544 60799754 + 0 NA Intergenic Intergenic -11962 ENSMUSG00000024993.15 ENSMUSG00000024993 ENSMUST00000142375 Fam45a protein_coding Interval_165677 chr9 50864814 50865023 + 0 NA intron (ENSMUSG00000032058.14, intron 5 of 15) protein_coding-intron (ENSMUSG00000032058.14, intron 5 of 16) -8094 ENSMUSG00000032058.14 ENSMUSG00000032058 ENSMUST00000176414 Ppp2r1b protein_coding Interval_145936 chr7 42462917 42463188 + 0 NA Intergenic Intergenic 2317 ENSMUSG00000092301.1 ENSMUSG00000092301 ENSMUST00000080945 Gm6887 processed_pseudogene Interval_124293 chr5 43672169 43673866 + 0 NA intron (ENSMUSG00000039765.15, intron 1 of 8) protein_coding-intron (ENSMUSG00000039765.15, intron 4 of 39) 728 ENSMUSG00000039765.15 ENSMUSG00000039765 ENSMUST00000127355 Cc2d2a protein_coding Interval_54775 chr14 74959631 74961657 + 0 NA Intergenic Intergenic -14442 ENSMUSG00000115019.1 ENSMUSG00000115019 ENSMUST00000228599 Gm4278 lincRNA Interval_159813 chr8 104003558 104003779 + 0 NA Intergenic Intergenic -67481 ENSMUSG00000110019.1 ENSMUSG00000110019 ENSMUST00000211125 Gm8748 processed_pseudogene Interval_42125 chr13 9001582 9003127 + 0 NA intron (ENSMUSG00000113543.1, intron 2 of 2) lincRNA-intron (ENSMUSG00000113543.1, intron 2 of 2) 9349 ENSMUSG00000113731.1 ENSMUSG00000113731 ENSMUST00000223218 Gm48650 processed_pseudogene Interval_13749 chr10 21789857 21790363 + 0 NA Intergenic Intergenic 46243 ENSMUSG00000099749.1 ENSMUSG00000099749 ENSMUST00000189792 Gm29323 lincRNA Interval_62499 chr15 93518525 93520012 + 0 NA exon (ENSMUSG00000036158.12, exon 1 of 8) protein_coding-exon (ENSMUSG00000036158.12, exon 1 of 8) 255 ENSMUSG00000036158.12 ENSMUSG00000036158 ENSMUST00000048982 Prickle1 protein_coding Interval_165412 chr9 47586248 47586511 + 0 NA intron (ENSMUSG00000032076.20, intron 1 of 8) protein_coding-intron (ENSMUSG00000032076.20, intron 1 of 8) 56027 ENSMUSG00000032076.20 ENSMUSG00000032076 ENSMUST00000034581 Cadm1 protein_coding Interval_84183 chr19 8569415 8569995 + 0 NA Intergenic Intergenic 19491 ENSMUSG00000086174.1 ENSMUSG00000086174 ENSMUST00000136332 Gm6425 processed_pseudogene Interval_145241 chr7 30854715 30855494 + 0 NA exon (ENSMUSG00000019429.7, exon 2 of 2) protein_coding-exon (ENSMUSG00000019429.7, exon 2 of 2) 1063 ENSMUSG00000019429.7 ENSMUSG00000019429 ENSMUST00000185748 Ffar3 protein_coding Interval_155260 chr8 29132452 29133385 + 0 NA intron (ENSMUSG00000063626.6, intron 1 of 14) protein_coding-intron (ENSMUSG00000063626.6, intron 1 of 17) -20142 ENSMUSG00000109648.1 ENSMUSG00000109648 ENSMUST00000209370 Svet1 TEC Interval_165874 chr9 54067534 54069261 + 0 NA promoter-TSS (ENSMUSG00000074345.4) protein_coding-promoter-TSS (ENSMUSG00000074345.4) -25 ENSMUSG00000074345.4 ENSMUSG00000074345 ENSMUST00000214656 Tnfaip8l3 protein_coding Interval_46647 chr13 67909534 67910351 + 0 NA Intergenic Intergenic -39809 ENSMUSG00000113095.1 ENSMUSG00000113095 ENSMUST00000221347 Gm7969 lincRNA Interval_20055 chr10 112825408 112825833 + 0 NA Intergenic Intergenic -12132 ENSMUSG00000112722.1 ENSMUSG00000112722 ENSMUST00000218495 Gm3942 lincRNA Interval_144111 chr7 19469646 19470559 + 0 NA intron (ENSMUSG00000011263.16, intron 2 of 11) protein_coding-intron (ENSMUSG00000011263.16, intron 2 of 11) 1874 ENSMUSG00000109301.1 ENSMUSG00000109301 ENSMUST00000208007 Gm45167 processed_pseudogene Interval_47314 chr13 81155380 81155829 + 0 NA intron (ENSMUSG00000069170.14, intron 4 of 7) protein_coding-intron (ENSMUSG00000069170.14, intron 86 of 89) -68040 ENSMUSG00000114836.1 ENSMUSG00000114836 ENSMUST00000224010 Gm18517 transcribed_processed_pseudogene Interval_47175 chr13 77109751 77109987 + 0 NA intron (ENSMUSG00000021597.16, intron 4 of 5) protein_coding-intron (ENSMUSG00000021597.16, intron 5 of 20) 25596 ENSMUSG00000021597.16 ENSMUSG00000021597 ENSMUST00000162320 Slf1 protein_coding Interval_162971 chr9 13874485 13874792 + 0 NA Intergenic Intergenic 5932 ENSMUSG00000111012.1 ENSMUSG00000111012 ENSMUST00000216866 Gm7588 processed_pseudogene Interval_6687 chr1 118756084 118757811 + 0 NA Intergenic Intergenic -53189 ENSMUSG00000100040.1 ENSMUSG00000100040 ENSMUST00000190981 Gm28467 processed_pseudogene Interval_137566 chr6 73271459 73271819 + 0 NA intron (ENSMUSG00000052738.14, intron 7 of 8) protein_coding-intron (ENSMUSG00000052738.14, intron 7 of 8) 22979 ENSMUSG00000052738.14 ENSMUSG00000052738 ENSMUST00000173409 Suclg1 protein_coding Interval_56901 chr14 122982436 122984003 + 0 NA promoter-TSS (ENSMUSG00000041594.18) protein_coding-promoter-TSS (ENSMUSG00000041594.18) 31100 ENSMUSG00000085423.1 ENSMUSG00000085423 ENSMUST00000136187 4930594M22Rik antisense Interval_4385 chr1 73663305 73664204 + 0 NA intron (ENSMUSG00000100301.6, intron 2 of 3) lincRNA-intron (ENSMUSG00000100301.6, intron 7 of 8) 80193 ENSMUSG00000100301.6 ENSMUSG00000100301 ENSMUST00000189514 6030407O03Rik lincRNA Interval_69942 chr17 3360488 3360748 + 0 NA intron (ENSMUSG00000023800.15, intron 1 of 26) protein_coding-intron (ENSMUSG00000023800.15, intron 1 of 26) -13551 ENSMUSG00000115330.1 ENSMUSG00000115330 ENSMUST00000226386 Gm49221 processed_pseudogene Interval_2547 chr1 40194768 40195765 + 0 NA Intergenic Intergenic -42754 ENSMUSG00000103560.1 ENSMUSG00000103560 ENSMUST00000191850 Gm38070 TEC Interval_90061 chr2 27637235 27637426 + 0 NA Intergenic Intergenic -87889 ENSMUSG00000015846.15 ENSMUSG00000015846 ENSMUST00000148756 Rxra protein_coding Interval_109039 chr3 135363534 135363844 + 0 NA intron (ENSMUSG00000050150.16, intron 3 of 5) protein_coding-intron (ENSMUSG00000050150.16, intron 4 of 12) 15359 ENSMUSG00000050150.16 ENSMUSG00000050150 ENSMUST00000159276 Slc9b1 protein_coding Interval_19793 chr10 109010380 109012055 + 0 NA promoter-TSS (ENSMUSG00000035864.14) protein_coding-promoter-TSS (ENSMUSG00000035864.14) -2106 ENSMUSG00000035864.14 ENSMUSG00000035864 ENSMUST00000126278 Syt1 protein_coding Interval_105018 chr3 79821269 79821822 + 0 NA intron (ENSMUSG00000027956.11, intron 9 of 11) protein_coding-intron (ENSMUSG00000027956.11, intron 9 of 11) -13388 ENSMUSG00000077461.1 ENSMUSG00000077461 ENSMUST00000104273 Gm26420 snRNA Interval_93370 chr2 72463980 72464192 + 0 NA Intergenic Intergenic -12167 ENSMUSG00000055612.15 ENSMUSG00000055612 ENSMUST00000137880 Cdca7 protein_coding Interval_115502 chr4 99535174 99535380 + 0 NA Intergenic Intergenic 9345 ENSMUSG00000103575.1 ENSMUSG00000103575 ENSMUST00000194238 Gm37117 TEC Interval_41546 chr12 116183583 116184152 + 0 NA Intergenic Intergenic 10554 ENSMUSG00000065685.1 ENSMUSG00000065685 ENSMUST00000083751 Gm23732 snRNA Interval_84136 chr19 7441031 7442068 + 0 NA intron (ENSMUSG00000024758.15, intron 1 of 6) protein_coding-intron (ENSMUSG00000024758.15, intron 2 of 7) 18976 ENSMUSG00000098293.1 ENSMUSG00000098293 ENSMUST00000183837 Mir6991 miRNA Interval_570 chr1 7542968 7543727 + 0 NA Intergenic Intergenic 45379 ENSMUSG00000103067.1 ENSMUSG00000103067 ENSMUST00000194886 Gm30414 lincRNA Interval_149971 chr7 103937793 103938135 + 0 NA exon (ENSMUSG00000073938.3, exon 1 of 1) protein_coding-exon (ENSMUSG00000073938.3, exon 1 of 1) -1790 ENSMUSG00000109837.1 ENSMUSG00000109837 ENSMUST00000211625 Gm45655 unprocessed_pseudogene Interval_56356 chr14 118016576 118016946 + 0 NA intron (ENSMUSG00000022129.4, intron 7 of 7) protein_coding-intron (ENSMUSG00000022129.4, intron 7 of 7) 10774 ENSMUSG00000022129.4 ENSMUSG00000022129 ENSMUST00000227850 Dct protein_coding Interval_8566 chr1 142766619 142767608 + 0 NA Intergenic Intergenic 11920 ENSMUSG00000102818.1 ENSMUSG00000102818 ENSMUST00000195327 Gm37796 TEC Interval_87504 chr19 53090230 53090894 + 0 NA Intergenic Intergenic 14319 ENSMUSG00000099988.7 ENSMUSG00000099988 ENSMUST00000236249 1700054A03Rik processed_transcript Interval_117043 chr4 119195128 119195972 + 0 NA promoter-TSS (ENSMUSG00000028643.11) protein_coding-promoter-TSS (ENSMUSG00000028643.11) -358 ENSMUSG00000028643.11 ENSMUSG00000028643 ENSMUST00000210595 Svbp protein_coding Interval_19659 chr10 107442599 107442963 + 0 NA Intergenic Intergenic -5422 ENSMUSG00000102934.1 ENSMUSG00000102934 ENSMUST00000194653 Gm38117 TEC Interval_138604 chr6 90346190 90346490 + 0 NA exon (ENSMUSG00000034456.15, exon 10 of 20) protein_coding-exon (ENSMUSG00000034456.15, exon 10 of 20) 13051 ENSMUSG00000034456.15 ENSMUSG00000034456 ENSMUST00000164761 Uroc1 protein_coding Interval_148045 chr7 78803989 78804399 + 0 NA Intergenic Intergenic -14091 ENSMUSG00000108603.1 ENSMUSG00000108603 ENSMUST00000205759 5330411O13Rik lincRNA Interval_165505 chr9 48822620 48823444 + 0 NA intron (ENSMUSG00000066687.5, intron 2 of 6) protein_coding-intron (ENSMUSG00000066687.5, intron 2 of 6) 13190 ENSMUSG00000066687.5 ENSMUSG00000066687 ENSMUST00000216150 Zbtb16 protein_coding Interval_110783 chr4 8362418 8362622 + 0 NA Intergenic Intergenic 91727 ENSMUSG00000103127.1 ENSMUSG00000103127 ENSMUST00000194755 Gm37386 TEC Interval_143032 chr6 148740978 148741230 + 0 NA Intergenic Intergenic 39106 ENSMUSG00000107405.1 ENSMUSG00000107405 ENSMUST00000203917 Gm44115 lincRNA Interval_68692 chr16 84778629 84780501 + 0 NA intron (ENSMUSG00000053062.16, intron 1 of 9) protein_coding-intron (ENSMUSG00000053062.16, intron 1 of 3) -13993 ENSMUSG00000053062.16 ENSMUSG00000053062 ENSMUST00000138054 Jam2 protein_coding Interval_110413 chr3 157897681 157898049 + 0 NA promoter-TSS (ENSMUSG00000028179.12) protein_coding-promoter-TSS (ENSMUSG00000028179.12) -674 ENSMUSG00000104528.1 ENSMUSG00000104528 ENSMUST00000196744 Gm43314 TEC Interval_11771 chr1 185328632 185329674 + 0 NA promoter-TSS (ENSMUSG00000102526.1) TEC-promoter-TSS (ENSMUSG00000102526.1) 243 ENSMUSG00000026618.11 ENSMUSG00000026618 ENSMUST00000153211 Iars2 protein_coding Interval_161489 chr8 120693869 120694494 + 0 NA intron (ENSMUSG00000092329.1, intron 1 of 15) protein_coding-intron (ENSMUSG00000092329.1, intron 1 of 15) 8782 ENSMUSG00000104484.1 ENSMUSG00000104484 ENSMUST00000193913 Gm33142 TEC Interval_40197 chr12 102499582 102500207 + 0 NA Intergenic Intergenic 15437 ENSMUSG00000021192.16 ENSMUSG00000021192 ENSMUST00000222744 Golga5 protein_coding Interval_104664 chr3 69233448 69235293 + 0 NA Intergenic Intergenic 11951 ENSMUSG00000098207.1 ENSMUSG00000098207 ENSMUST00000183126 Arl14 protein_coding Interval_2438 chr1 39348545 39350111 + 0 NA intron (ENSMUSG00000026077.15, intron 19 of 20) protein_coding-intron (ENSMUSG00000026077.15, intron 19 of 20) -18821 ENSMUSG00000073702.11 ENSMUSG00000073702 ENSMUST00000191855 Rpl31 protein_coding Interval_139715 chr6 108033481 108033844 + 0 NA Intergenic Intergenic -31400 ENSMUSG00000034639.7 ENSMUSG00000034639 ENSMUST00000138140 Setmar protein_coding Interval_40870 chr12 108995979 108996669 + 0 NA intron (ENSMUSG00000040877.16, intron 4 of 6) protein_coding-intron (ENSMUSG00000040877.16, intron 5 of 7) -4673 ENSMUSG00000113478.1 ENSMUSG00000113478 ENSMUST00000220743 Gm18405 processed_pseudogene Interval_155827 chr8 39658607 39658826 + 0 NA Intergenic Intergenic -16045 ENSMUSG00000025044.16 ENSMUSG00000025044 ENSMUST00000210589 Msr1 protein_coding Interval_105286 chr3 84594319 84595896 + 0 NA exon (ENSMUSG00000047819.3, exon 1 of 1) protein_coding-exon (ENSMUSG00000047819.3, exon 1 of 1) 1533 ENSMUSG00000047819.3 ENSMUSG00000047819 ENSMUST00000062623 Tigd4 protein_coding Interval_6641 chr1 118476644 118477158 + 0 NA intron (ENSMUSG00000064302.13, intron 1 of 6) protein_coding-intron (ENSMUSG00000064302.13, intron 8 of 39) 2690 ENSMUSG00000100770.1 ENSMUSG00000100770 ENSMUST00000190678 Gm28466 processed_pseudogene Interval_119933 chr4 141005763 141006606 + 0 NA exon (ENSMUSG00000036622.15, exon 26 of 29) protein_coding-exon (ENSMUSG00000036622.15, exon 26 of 29) -4234 ENSMUSG00000060572.17 ENSMUSG00000060572 ENSMUST00000071977 Mfap2 protein_coding Interval_82228 chr18 69430140 69430763 + 0 NA intron (ENSMUSG00000053477.17, intron 1 of 17) protein_coding-intron (ENSMUSG00000053477.17, intron 4 of 20) -91999 ENSMUSG00000053477.17 ENSMUSG00000053477 ENSMUST00000136019 Tcf4 protein_coding Interval_84053 chr19 6979443 6980872 + 0 NA promoter-TSS (ENSMUSG00000056629.16) protein_coding-promoter-TSS (ENSMUSG00000056629.16) 93 ENSMUSG00000056629.16 ENSMUSG00000056629 ENSMUST00000237119 Fkbp2 protein_coding Interval_172925 chrX 56325321 56325571 + 0 NA Intergenic Intergenic 7838 ENSMUSG00000085114.1 ENSMUSG00000085114 ENSMUST00000138262 1600025M17Rik lincRNA Interval_104184 chr3 59983548 59983917 + 0 NA Intergenic Intergenic -23011 ENSMUSG00000091376.1 ENSMUSG00000091376 ENSMUST00000169794 Aadacl2 protein_coding Interval_101885 chr3 10375374 10375785 + 0 NA intron (ENSMUSG00000027536.6, intron 1 of 4) protein_coding-intron (ENSMUSG00000027536.6, intron 1 of 4) 8621 ENSMUSG00000027536.6 ENSMUSG00000027536 ENSMUST00000191826 Chmp4c protein_coding Interval_134679 chr6 30320683 30321574 + 0 NA intron (ENSMUSG00000084861.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000084861.1, intron 1 of 1) 16507 ENSMUSG00000084861.1 ENSMUSG00000084861 ENSMUST00000140275 1700095J07Rik lincRNA Interval_111992 chr4 33072910 33073310 + 0 NA intron (ENSMUSG00000023267.10, intron 2 of 8) protein_coding-intron (ENSMUSG00000023267.10, intron 2 of 8) -8395 ENSMUSG00000023267.10 ENSMUSG00000023267 ENSMUST00000147889 Gabrr2 protein_coding Interval_52406 chr14 45679232 45679784 + 0 NA Intergenic Intergenic -12168 ENSMUSG00000086124.2 ENSMUSG00000086124 ENSMUST00000138379 A530076I17Rik lincRNA Interval_4289 chr1 72406381 72406870 + 0 NA Intergenic Intergenic -52874 ENSMUSG00000085812.1 ENSMUSG00000085812 ENSMUST00000146593 Gm15843 processed_pseudogene Interval_136107 chr6 51060257 51060757 + 0 NA Intergenic Intergenic 93239 ENSMUSG00000108153.1 ENSMUSG00000108153 ENSMUST00000203677 Gm44402 processed_pseudogene Interval_109568 chr3 144527980 144528699 + 0 NA intron (ENSMUSG00000040151.9, intron 1 of 6) protein_coding-intron (ENSMUSG00000040151.9, intron 1 of 6) -4338 ENSMUSG00000106057.1 ENSMUSG00000106057 ENSMUST00000198100 Gm43560 sense_intronic Interval_40703 chr12 107653342 107653640 + 0 NA Intergenic Intergenic 40491 ENSMUSG00000079359.2 ENSMUSG00000079359 ENSMUST00000165520 Gm9006 processed_pseudogene Interval_5459 chr1 89014886 89016331 + 0 NA promoter-TSS (ENSMUSG00000099378.1) lincRNA-promoter-TSS (ENSMUSG00000099378.1) -505 ENSMUSG00000099378.1 ENSMUSG00000099378 ENSMUST00000186180 1700067G17Rik lincRNA Interval_123125 chr5 29829722 29829913 + 0 NA Intergenic Intergenic 3490 ENSMUSG00000106551.1 ENSMUSG00000106551 ENSMUST00000198125 Gm1969 processed_pseudogene Interval_170298 chr9 106771627 106771881 + 0 NA intron (ENSMUSG00000040661.6, intron 1 of 21) protein_coding-intron (ENSMUSG00000040661.6, intron 1 of 21) 17422 ENSMUSG00000040661.6 ENSMUSG00000040661 ENSMUST00000191300 Rad54l2 protein_coding Interval_47145 chr13 76291306 76292501 + 0 NA intron (ENSMUSG00000109228.2, intron 1 of 10) protein_coding-intron (ENSMUSG00000109228.2, intron 1 of 10) 29376 ENSMUSG00000092732.1 ENSMUSG00000092732 ENSMUST00000174991 Gm24025 miRNA Interval_65559 chr16 23302797 23303215 + 0 NA intron (ENSMUSG00000022885.16, intron 1 of 6) protein_coding-intron (ENSMUSG00000022885.16, intron 2 of 7) 76985 ENSMUSG00000022885.16 ENSMUSG00000022885 ENSMUST00000115335 St6gal1 protein_coding Interval_91847 chr2 50272493 50272660 + 0 NA Intergenic Intergenic 23847 ENSMUSG00000026766.16 ENSMUSG00000026766 ENSMUST00000133768 Mmadhc protein_coding Interval_91032 chr2 34570067 34571335 + 0 NA intron (ENSMUSG00000038696.14, intron 8 of 11) protein_coding-intron (ENSMUSG00000038696.14, intron 7 of 10) 5702 ENSMUSG00000081992.1 ENSMUSG00000081992 ENSMUST00000119822 Gm13408 processed_pseudogene Interval_114391 chr4 74790250 74790490 + 0 NA Intergenic Intergenic -101046 ENSMUSG00000083659.1 ENSMUSG00000083659 ENSMUST00000121086 Gm11258 processed_pseudogene Interval_173744 chrX 103404663 103405692 + 0 NA Intergenic Intergenic -9290 ENSMUSG00000031329.4 ENSMUSG00000031329 ENSMUST00000033691 Tsx protein_coding Interval_54599 chr14 70970084 70971341 + 0 NA intron (ENSMUSG00000022103.10, intron 5 of 6) protein_coding-intron (ENSMUSG00000022103.10, intron 7 of 8) 80184 ENSMUSG00000022103.10 ENSMUSG00000022103 ENSMUST00000227633 Gfra2 protein_coding Interval_51294 chr14 25805880 25807113 + 0 NA Intergenic Intergenic 3385 ENSMUSG00000099057.1 ENSMUSG00000099057 ENSMUST00000184296 Gm27185 processed_pseudogene Interval_109277 chr3 138560306 138560940 + 0 NA TTS (ENSMUSG00000028156.12) protein_coding-TTS (ENSMUSG00000028156.12) 19938 ENSMUSG00000106353.1 ENSMUSG00000106353 ENSMUST00000199110 Gm43726 processed_pseudogene Interval_52474 chr14 46805903 46806152 + 0 NA exon (ENSMUSG00000115041.1, exon 1 of 1) TEC-exon (ENSMUSG00000115041.1, exon 1 of 1) 124 ENSMUSG00000115041.1 ENSMUSG00000115041 ENSMUST00000228616 Gm48939 TEC Interval_60574 chr15 75269915 75270863 + 0 NA intron (ENSMUSG00000022583.12, intron 2 of 2) protein_coding-intron (ENSMUSG00000022583.12, intron 3 of 3) 1687 ENSMUSG00000022583.12 ENSMUSG00000022583 ENSMUST00000189654 Ly6f protein_coding Interval_5545 chr1 89724318 89725093 + 0 NA intron (ENSMUSG00000055013.16, intron 9 of 16) protein_coding-intron (ENSMUSG00000055013.16, intron 9 of 17) 39903 ENSMUSG00000088775.1 ENSMUSG00000088775 ENSMUST00000158150 Gm26037 misc_RNA Interval_161193 chr8 118431947 118432289 + 0 NA intron (ENSMUSG00000031841.19, intron 2 of 8) protein_coding-intron (ENSMUSG00000031841.19, intron 1 of 13) -5519 ENSMUSG00000064801.1 ENSMUSG00000064801 ENSMUST00000082867 Gm24035 snRNA Interval_142213 chr6 138816334 138816663 + 0 NA Intergenic Intergenic 43626 ENSMUSG00000107686.1 ENSMUSG00000107686 ENSMUST00000203400 Gm9038 processed_pseudogene Interval_112145 chr4 34934037 34934327 + 0 NA Intergenic Intergenic 7167 ENSMUSG00000082709.1 ENSMUSG00000082709 ENSMUST00000121986 Gm12362 processed_pseudogene Interval_108267 chr3 123143433 123143762 + 0 NA TTS (ENSMUSG00000106012.1) processed_pseudogene-TTS (ENSMUSG00000106012.1) 1309 ENSMUSG00000106012.1 ENSMUSG00000106012 ENSMUST00000196387 Gm43744 processed_pseudogene Interval_128384 chr5 113034719 113035519 + 0 NA Intergenic Intergenic -9025 ENSMUSG00000065373.1 ENSMUSG00000065373 ENSMUST00000083439 Gm22740 snRNA Interval_107247 chr3 104941492 104941720 + 0 NA Intergenic Intergenic 16767 ENSMUSG00000105925.1 ENSMUSG00000105925 ENSMUST00000200502 Gm43846 sense_intronic Interval_9901 chr1 163962153 163962506 + 0 NA promoter-TSS (ENSMUSG00000041406.14) protein_coding-promoter-TSS (ENSMUSG00000041406.14) 32212 ENSMUSG00000041406.14 ENSMUSG00000041406 ENSMUST00000162949 BC055324 protein_coding Interval_27724 chr11 69686449 69686891 + 0 NA promoter-TSS (ENSMUSG00000089669.7) protein_coding-promoter-TSS (ENSMUSG00000089669.7) -886 ENSMUSG00000089669.7 ENSMUSG00000089669 ENSMUST00000108648 Tnfsf13 protein_coding Interval_74370 chr17 49614706 49615656 + 0 NA promoter-TSS (ENSMUSG00000023999.14) protein_coding-promoter-TSS (ENSMUSG00000023999.14) 9 ENSMUSG00000023999.14 ENSMUSG00000023999 ENSMUST00000159354 Kif6 protein_coding Interval_106268 chr3 95029557 95030103 + 0 NA Intergenic Intergenic 4086 ENSMUSG00000005625.15 ENSMUSG00000005625 ENSMUST00000143688 Psmd4 protein_coding Interval_35429 chr12 21568377 21569849 + 0 NA Intergenic Intergenic 25806 ENSMUSG00000109975.1 ENSMUSG00000109975 ENSMUST00000209258 Gm19196 transcribed_unprocessed_pseudogene Interval_160917 chr8 115013288 115013738 + 0 NA intron (ENSMUSG00000004637.15, intron 8 of 8) protein_coding-intron (ENSMUSG00000004637.15, intron 8 of 8) 39400 ENSMUSG00000088428.1 ENSMUSG00000088428 ENSMUST00000157803 Gm22556 rRNA Interval_145990 chr7 42896809 42897713 + 0 NA exon (ENSMUSG00000090751.2, exon 6 of 6) protein_coding-exon (ENSMUSG00000090751.2, exon 6 of 6) 18665 ENSMUSG00000092191.1 ENSMUSG00000092191 ENSMUST00000172692 Gm7211 processed_pseudogene Interval_90445 chr2 30481122 30481934 + 0 NA Intergenic Intergenic -7309 ENSMUSG00000089762.3 ENSMUSG00000089762 ENSMUST00000065134 Ier5l protein_coding Interval_105437 chr3 86322923 86323243 + 0 NA intron (ENSMUSG00000028080.16, intron 16 of 38) protein_coding-intron (ENSMUSG00000028080.16, intron 17 of 56) -41374 ENSMUSG00000065764.1 ENSMUSG00000065764 ENSMUST00000083830 Gm23850 snRNA Interval_94982 chr2 102506420 102507422 + 0 NA Intergenic Intergenic -43228 ENSMUSG00000027188.8 ENSMUSG00000027188 ENSMUST00000143071 Pamr1 protein_coding Interval_134700 chr6 30486641 30486870 + 0 NA intron (ENSMUSG00000029782.20, intron 14 of 15) protein_coding-intron (ENSMUSG00000029782.20, intron 11 of 11) 5424 ENSMUSG00000029782.20 ENSMUSG00000029782 ENSMUST00000148638 Tmem209 protein_coding Interval_131583 chr5 138287838 138288039 + 0 NA intron (ENSMUSG00000036928.14, intron 4 of 33) protein_coding-intron (ENSMUSG00000036928.14, intron 4 of 33) 7394 ENSMUSG00000036928.14 ENSMUSG00000036928 ENSMUST00000159189 Stag3 protein_coding Interval_13243 chr10 13513155 13513475 + 0 NA TTS (ENSMUSG00000019810.15) protein_coding-TTS (ENSMUSG00000019810.15) 7278 ENSMUSG00000019810.15 ENSMUSG00000019810 ENSMUST00000166466 Fuca2 protein_coding Interval_85397 chr19 25471310 25472381 + 0 NA Intergenic Intergenic -17782 ENSMUSG00000064843.1 ENSMUSG00000064843 ENSMUST00000082909 Gm26207 snRNA Interval_127728 chr5 107121191 107121441 + 0 NA intron (ENSMUSG00000029287.14, intron 13 of 14) protein_coding-intron (ENSMUSG00000029287.14, intron 15 of 16) 14372 ENSMUSG00000106643.1 ENSMUSG00000106643 ENSMUST00000199780 Gm43422 TEC Interval_141471 chr6 128457661 128457901 + 0 NA intron (ENSMUSG00000059659.7, intron 2 of 4) antisense-intron (ENSMUSG00000059659.7, intron 2 of 2) -9383 ENSMUSG00000107505.1 ENSMUSG00000107505 ENSMUST00000203239 Stambp-ps1 processed_pseudogene Interval_135042 chr6 34913460 34913904 + 0 NA Intergenic Intergenic -2849 ENSMUSG00000058486.11 ENSMUSG00000058486 ENSMUST00000134830 Wdr91 protein_coding Interval_100831 chr2 172773317 172773610 + 0 NA Intergenic Intergenic 90878 ENSMUSG00000093160.1 ENSMUSG00000093160 ENSMUST00000175419 Gm22773 miRNA Interval_60499 chr15 74421895 74422128 + 0 NA intron (ENSMUSG00000118581.1, intron 1 of 4) unitary_pseudogene-intron (ENSMUSG00000118581.1, intron 1 of 4) 18433 ENSMUSG00000118581.1 ENSMUSG00000118581 ENSMUST00000239328 AC119183.1 unitary_pseudogene Interval_109570 chr3 144535565 144535799 + 0 NA intron (ENSMUSG00000040151.9, intron 1 of 6) protein_coding-intron (ENSMUSG00000040151.9, intron 1 of 6) -11681 ENSMUSG00000106057.1 ENSMUSG00000106057 ENSMUST00000198100 Gm43560 sense_intronic Interval_59041 chr15 41970722 41971765 + 0 NA Intergenic Intergenic 22246 ENSMUSG00000088469.1 ENSMUSG00000088469 ENSMUST00000157844 Gm24751 snoRNA Interval_18774 chr10 90504394 90504581 + 0 NA intron (ENSMUSG00000058589.14, intron 12 of 25) protein_coding-intron (ENSMUSG00000058589.14, intron 12 of 17) 53577 ENSMUSG00000088221.1 ENSMUSG00000088221 ENSMUST00000157596 Gm22602 snRNA Interval_68426 chr16 76353804 76355106 + 0 NA intron (ENSMUSG00000048490.14, intron 1 of 3) protein_coding-intron (ENSMUSG00000048490.14, intron 1 of 3) 19371 ENSMUSG00000048490.14 ENSMUSG00000048490 ENSMUST00000145649 Nrip1 protein_coding Interval_23444 chr11 22671894 22672342 + 0 NA Intergenic Intergenic -45454 ENSMUSG00000083008.1 ENSMUSG00000083008 ENSMUST00000119022 Gm12053 processed_pseudogene Interval_92130 chr2 53654401 53654670 + 0 NA Intergenic Intergenic 42269 ENSMUSG00000083287.4 ENSMUSG00000083287 ENSMUST00000121574 Gm13502 processed_pseudogene Interval_24064 chr11 29885258 29885716 + 0 NA intron (ENSMUSG00000044072.14, intron 5 of 41) protein_coding-intron (ENSMUSG00000044072.14, intron 5 of 41) 36026 ENSMUSG00000088135.1 ENSMUSG00000088135 ENSMUST00000157510 Gm22588 snoRNA Interval_34093 chr11 120489170 120489789 + 0 NA TTS (ENSMUSG00000039640.7) protein_coding-TTS (ENSMUSG00000039640.7) 2915 ENSMUSG00000086929.1 ENSMUSG00000086929 ENSMUST00000142520 Gm11788 antisense Interval_158422 chr8 83636716 83636930 + 0 NA Intergenic Intergenic -15875 ENSMUSG00000019433.9 ENSMUSG00000019433 ENSMUST00000212463 Gipc1 protein_coding Interval_17290 chr10 75620995 75621807 + 0 NA Intergenic Intergenic -1898 ENSMUSG00000112643.1 ENSMUSG00000112643 ENSMUST00000218652 Gm19688 processed_pseudogene Interval_38710 chr12 81425522 81425792 + 0 NA intron (ENSMUSG00000091803.7, intron 3 of 4) protein_coding-intron (ENSMUSG00000091803.7, intron 3 of 3) -3711 ENSMUSG00000072972.3 ENSMUSG00000072972 ENSMUST00000085319 Adam4 protein_coding Interval_166156 chr9 57147633 57148845 + 0 NA promoter-TSS (ENSMUSG00000032298.13) protein_coding-promoter-TSS (ENSMUSG00000032298.13) -112 ENSMUSG00000032298.13 ENSMUSG00000032298 ENSMUST00000034842 Neil1 protein_coding Interval_71555 chr17 24533234 24534041 + 0 NA promoter-TSS (ENSMUSG00000079657.10) protein_coding-promoter-TSS (ENSMUSG00000079657.10) 75 ENSMUSG00000079657.10 ENSMUSG00000079657 ENSMUST00000176533 Rab26 protein_coding Interval_81219 chr18 56572594 56573848 + 0 NA promoter-TSS (ENSMUSG00000053644.13) protein_coding-promoter-TSS (ENSMUSG00000053644.13) 10628 ENSMUSG00000008301.11 ENSMUSG00000008301 ENSMUST00000008445 Phax protein_coding Interval_171373 chr9 117153812 117154456 + 0 NA intron (ENSMUSG00000039607.17, intron 1 of 13) protein_coding-intron (ENSMUSG00000039607.17, intron 1 of 12) 88607 ENSMUSG00000092516.1 ENSMUSG00000092516 ENSMUST00000174520 Gm20397 processed_pseudogene Interval_172319 chrX 12941419 12942914 + 0 NA Intergenic Intergenic 2800 ENSMUSG00000083751.1 ENSMUSG00000083751 ENSMUST00000120045 Gm14534 processed_pseudogene Interval_88361 chr2 4436758 4437189 + 0 NA intron (ENSMUSG00000026657.17, intron 3 of 24) protein_coding-intron (ENSMUSG00000026657.17, intron 2 of 23) 29697 ENSMUSG00000086874.1 ENSMUSG00000086874 ENSMUST00000139479 Gm13175 antisense Interval_96718 chr2 127424703 127425718 + 0 NA promoter-TSS (ENSMUSG00000046338.4) protein_coding-promoter-TSS (ENSMUSG00000046338.4) 11 ENSMUSG00000046338.4 ENSMUSG00000046338 ENSMUST00000062211 Gpat2 protein_coding Interval_54282 chr14 67135678 67136606 + 0 NA Intergenic Intergenic -33446 ENSMUSG00000114697.1 ENSMUSG00000114697 ENSMUST00000225163 Gm30806 lincRNA Interval_81928 chr18 65940938 65941801 + 0 NA TTS (ENSMUSG00000097907.2) antisense-TTS (ENSMUSG00000097907.2) -2263 ENSMUSG00000024518.4 ENSMUSG00000024518 ENSMUST00000237506 Rax protein_coding Interval_86875 chr19 44554598 44555711 + 0 NA promoter-TSS (ENSMUSG00000025204.10) protein_coding-promoter-TSS (ENSMUSG00000025204.10) 272 ENSMUSG00000025204.10 ENSMUSG00000025204 ENSMUST00000166557 Ndufb8 protein_coding Interval_23320 chr11 21339092 21339352 + 0 NA intron (ENSMUSG00000001891.16, intron 3 of 9) protein_coding-intron (ENSMUSG00000001891.16, intron 3 of 9) 5453 ENSMUSG00000089555.1 ENSMUSG00000089555 ENSMUST00000158930 Mir1933 miRNA Interval_98610 chr2 153569163 153569788 + 0 NA Intergenic Intergenic 63256 ENSMUSG00000056941.17 ENSMUSG00000056941 ENSMUST00000109782 Commd7 protein_coding Interval_144319 chr7 24460793 24461793 + 0 NA Intergenic Intergenic -1207 ENSMUSG00000046223.10 ENSMUSG00000046223 ENSMUST00000206636 Plaur protein_coding Interval_57466 chr15 11408596 11409041 + 0 NA Intergenic Intergenic -9217 ENSMUSG00000022241.6 ENSMUSG00000022241 ENSMUST00000226904 Tars protein_coding Interval_112920 chr4 46068295 46068553 + 0 NA intron (ENSMUSG00000028328.13, intron 2 of 9) protein_coding-intron (ENSMUSG00000028328.13, intron 2 of 9) 29215 ENSMUSG00000028328.13 ENSMUSG00000028328 ENSMUST00000155730 Tmod1 protein_coding Interval_144585 chr7 26489478 26489973 + 0 NA Intergenic Intergenic -41459 ENSMUSG00000094866.1 ENSMUSG00000094866 ENSMUST00000180343 Gm25947 miRNA Interval_80209 chr18 38278963 38279560 + 0 NA intron (ENSMUSG00000024440.13, intron 1 of 3) protein_coding-intron (ENSMUSG00000024440.13, intron 1 of 3) -1302 ENSMUSG00000024440.13 ENSMUSG00000024440 ENSMUST00000193123 Pcdh12 protein_coding Interval_169252 chr9 95834117 95834472 + 0 NA intron (ENSMUSG00000049493.13, intron 1 of 15) protein_coding-intron (ENSMUSG00000049493.13, intron 1 of 15) 11017 ENSMUSG00000049493.13 ENSMUSG00000049493 ENSMUST00000135816 Pls1 protein_coding Interval_72583 chr17 30834066 30834295 + 0 NA intron (ENSMUSG00000033826.10, intron 85 of 90) protein_coding-intron (ENSMUSG00000033826.10, intron 87 of 92) 23256 ENSMUSG00000117760.1 ENSMUSG00000117760 ENSMUST00000237260 Gm41561 antisense Interval_146564 chr7 46858906 46859133 + 0 NA Intergenic Intergenic -2267 ENSMUSG00000030851.15 ENSMUSG00000030851 ENSMUST00000126004 Ldhc protein_coding Interval_13347 chr10 16394062 16394293 + 0 NA Intergenic Intergenic 29379 ENSMUSG00000112602.1 ENSMUSG00000112602 ENSMUST00000218710 Gm18557 processed_pseudogene Interval_91162 chr2 35595250 35596344 + 0 NA intron (ENSMUSG00000026883.17, intron 1 of 16) protein_coding-intron (ENSMUSG00000026883.17, intron 1 of 16) -37312 ENSMUSG00000086555.2 ENSMUSG00000086555 ENSMUST00000134679 Gm13446 processed_transcript Interval_148237 chr7 80036173 80036509 + 0 NA promoter-TSS (ENSMUSG00000108365.1) TEC-promoter-TSS (ENSMUSG00000108365.1) -364 ENSMUSG00000108365.1 ENSMUSG00000108365 ENSMUST00000206449 Gm44951 TEC Interval_171311 chr9 116285875 116286102 + 0 NA Intergenic Intergenic -45180 ENSMUSG00000110752.1 ENSMUSG00000110752 ENSMUST00000217456 D730003K21Rik lincRNA Interval_18904 chr10 92994032 92994536 + 0 NA intron (ENSMUSG00000020014.17, intron 26 of 67) protein_coding-intron (ENSMUSG00000020014.17, intron 26 of 66) 38678 ENSMUSG00000020014.17 ENSMUSG00000020014 ENSMUST00000171781 Cfap54 protein_coding Interval_128274 chr5 112222598 112223021 + 0 NA exon (ENSMUSG00000097986.2, exon 2 of 4) lincRNA-exon (ENSMUSG00000097986.2, exon 2 of 4) -5342 ENSMUSG00000098599.1 ENSMUSG00000098599 ENSMUST00000183644 Gm27627 misc_RNA Interval_154215 chr8 13493113 13494812 + 0 NA exon (ENSMUSG00000031451.6, exon 2 of 15) protein_coding-exon (ENSMUSG00000031451.6, exon 2 of 15) 528 ENSMUSG00000031451.6 ENSMUSG00000031451 ENSMUST00000033828 Gas6 protein_coding Interval_93145 chr2 70573989 70574195 + 0 NA exon (ENSMUSG00000070880.10, exon 5 of 17) protein_coding-exon (ENSMUSG00000070880.10, exon 5 of 17) 11929 ENSMUSG00000070880.10 ENSMUSG00000070880 ENSMUST00000140478 Gad1 protein_coding Interval_157629 chr8 71898626 71899285 + 0 NA Intergenic Intergenic -9680 ENSMUSG00000066880.15 ENSMUSG00000066880 ENSMUST00000119003 Zfp617 protein_coding Interval_5513 chr1 89467383 89467704 + 0 NA intron (ENSMUSG00000055013.16, intron 1 of 16) protein_coding-intron (ENSMUSG00000055013.16, intron 1 of 17) -15895 ENSMUSG00000104114.1 ENSMUSG00000104114 ENSMUST00000192974 Gm37297 TEC Interval_64381 chr16 10970048 10970995 + 0 NA intron (ENSMUSG00000022500.15, intron 1 of 2) protein_coding-intron (ENSMUSG00000022500.15, intron 1 of 3) 4797 ENSMUSG00000093897.1 ENSMUSG00000093897 ENSMUST00000177685 Gm26268 miRNA Interval_41444 chr12 114047729 114048418 + 0 NA TTS (ENSMUSG00000096108.2) IG_V_gene-TTS (ENSMUSG00000096108.2) 739 ENSMUSG00000096108.2 ENSMUSG00000096108 ENSMUST00000103468 Ighv11-2 IG_V_gene Interval_137571 chr6 73343890 73345331 + 0 NA Intergenic Intergenic -33969 ENSMUSG00000107931.1 ENSMUSG00000107931 ENSMUST00000204041 Gm44475 processed_pseudogene Interval_54348 chr14 67848300 67849091 + 0 NA intron (ENSMUSG00000044447.5, intron 5 of 17) protein_coding-intron (ENSMUSG00000044447.5, intron 5 of 51) 11050 ENSMUSG00000098866.1 ENSMUSG00000098866 ENSMUST00000183732 Mir6539 miRNA Interval_67000 chr16 39236239 39236669 + 0 NA Intergenic Intergenic -47548 ENSMUSG00000116965.1 ENSMUSG00000116965 ENSMUST00000231748 Gm36742 lincRNA Interval_10783 chr1 174674529 174675122 + 0 NA intron (ENSMUSG00000028354.13, intron 3 of 7) protein_coding-intron (ENSMUSG00000028354.13, intron 8 of 17) 65016 ENSMUSG00000028354.13 ENSMUSG00000028354 ENSMUST00000193905 Fmn2 protein_coding Interval_33177 chr11 114992868 114993139 + 0 NA Intergenic Intergenic -3081 ENSMUSG00000034641.2 ENSMUSG00000034641 ENSMUST00000045075 Cd300ld protein_coding Interval_67176 chr16 44151524 44151985 + 0 NA intron (ENSMUSG00000022698.17, intron 2 of 5) protein_coding-intron (ENSMUSG00000022698.17, intron 1 of 4) 11901 ENSMUSG00000022698.17 ENSMUSG00000022698 ENSMUST00000063542 Naa50 protein_coding Interval_163923 chr9 28552433 28553352 + 0 NA intron (ENSMUSG00000062257.13, intron 1 of 2) protein_coding-intron (ENSMUSG00000062257.13, intron 1 of 6) 260144 ENSMUSG00000106021.1 ENSMUSG00000106021 ENSMUST00000199274 Gm44316 miRNA Interval_3459 chr1 58518991 58519329 + 0 NA intron (ENSMUSG00000085054.2, intron 5 of 6) lincRNA-intron (ENSMUSG00000085054.2, intron 5 of 6) 14012 ENSMUSG00000085054.2 ENSMUSG00000085054 ENSMUST00000139825 Gm15834 lincRNA Interval_167483 chr9 69856795 69857233 + 0 NA Intergenic Intergenic -63863 ENSMUSG00000111286.1 ENSMUSG00000111286 ENSMUST00000216018 Gm18745 processed_pseudogene Interval_19604 chr10 105522708 105525050 + 0 NA intron (ENSMUSG00000036019.8, intron 1 of 8) protein_coding-intron (ENSMUSG00000036019.8, intron 1 of 11) 3419 ENSMUSG00000089904.1 ENSMUSG00000089904 ENSMUST00000160167 Gm15664 unprocessed_pseudogene Interval_136115 chr6 51172660 51173587 + 0 NA Intergenic Intergenic 96787 ENSMUSG00000065505.1 ENSMUSG00000065505 ENSMUST00000083571 Mir148a miRNA Interval_28246 chr11 74670147 74670712 + 0 NA TTS (ENSMUSG00000020741.17) protein_coding-TTS (ENSMUSG00000020741.17) 20889 ENSMUSG00000020741.17 ENSMUSG00000020741 ENSMUST00000128155 Cluh protein_coding Interval_78784 chr18 20609653 20610367 + 0 NA intron (ENSMUSG00000085595.1, intron 1 of 2) antisense-intron (ENSMUSG00000085595.1, intron 1 of 2) 51764 ENSMUSG00000044393.15 ENSMUSG00000044393 ENSMUST00000121837 Dsg2 protein_coding Interval_109362 chr3 139866434 139867138 + 0 NA Intergenic Intergenic -54022 ENSMUSG00000105880.1 ENSMUSG00000105880 ENSMUST00000197774 Gm43678 lincRNA Interval_37553 chr12 69834001 69834554 + 0 NA intron (ENSMUSG00000034761.15, intron 12 of 29) protein_coding-intron (ENSMUSG00000034761.15, intron 13 of 30) 14630 ENSMUSG00000113497.1 ENSMUSG00000113497 ENSMUST00000222163 Gm18030 processed_pseudogene Interval_137970 chr6 83841281 83842004 + 0 NA promoter-TSS (ENSMUSG00000108107.2) processed_pseudogene-promoter-TSS (ENSMUSG00000108107.2) -40 ENSMUSG00000108107.2 ENSMUSG00000108107 ENSMUST00000203728 Gm5312 processed_pseudogene Interval_150847 chr7 115605746 115607034 + 0 NA intron (ENSMUSG00000051910.13, intron 7 of 11) protein_coding-intron (ENSMUSG00000051910.13, intron 7 of 16) 239761 ENSMUSG00000051910.13 ENSMUSG00000051910 ENSMUST00000206912 Sox6 protein_coding Interval_139587 chr6 101722277 101722876 + 0 NA Intergenic Intergenic -51673 ENSMUSG00000052236.7 ENSMUSG00000052236 ENSMUST00000064002 Gm9871 lincRNA Interval_94837 chr2 96039816 96040145 + 0 NA Intergenic Intergenic -93455 ENSMUSG00000082327.1 ENSMUSG00000082327 ENSMUST00000120750 Gm13801 processed_pseudogene Interval_118357 chr4 130861377 130862169 + 0 NA Intergenic Intergenic -3893 ENSMUSG00000077381.1 ENSMUSG00000077381 ENSMUST00000104193 Gm22660 snoRNA Interval_54450 chr14 69827977 69828452 + 0 NA Intergenic Intergenic -12206 ENSMUSG00000022085.4 ENSMUSG00000022085 ENSMUST00000022678 Pebp4 protein_coding Interval_16002 chr10 60029229 60029444 + 0 NA intron (ENSMUSG00000044475.14, intron 5 of 10) protein_coding-intron (ENSMUSG00000044475.14, intron 5 of 10) 26531 ENSMUSG00000044475.14 ENSMUSG00000044475 ENSMUST00000164083 Ascc1 protein_coding Interval_138290 chr6 86950535 86951518 + 0 NA TTS (ENSMUSG00000057230.14) protein_coding-TTS (ENSMUSG00000057230.14) -10615 ENSMUSG00000107576.1 ENSMUSG00000107576 ENSMUST00000204381 Gm44093 TEC Interval_92568 chr2 60748615 60749469 + 0 NA Intergenic Intergenic -75316 ENSMUSG00000026971.15 ENSMUSG00000026971 ENSMUST00000142696 Itgb6 protein_coding Interval_168573 chr9 83681787 83682171 + 0 NA intron (ENSMUSG00000111820.1, intron 1 of 4) lincRNA-intron (ENSMUSG00000111820.1, intron 1 of 4) 5546 ENSMUSG00000111820.1 ENSMUSG00000111820 ENSMUST00000214393 Gm36120 lincRNA Interval_82222 chr18 69369726 69371914 + 0 NA intron (ENSMUSG00000053477.17, intron 1 of 6) protein_coding-intron (ENSMUSG00000053477.17, intron 3 of 20) 114532 ENSMUSG00000098060.1 ENSMUSG00000098060 ENSMUST00000183237 Gm4842 processed_pseudogene Interval_91687 chr2 47757428 47757837 + 0 NA Intergenic Intergenic 215648 ENSMUSG00000092853.1 ENSMUSG00000092853 ENSMUST00000175112 Gm25959 miRNA Interval_16447 chr10 62919944 62921180 + 0 NA promoter-TSS (ENSMUSG00000071253.8) protein_coding-promoter-TSS (ENSMUSG00000071253.8) 1003 ENSMUSG00000088674.1 ENSMUSG00000088674 ENSMUST00000158049 Gm22803 misc_RNA Interval_84737 chr19 16036133 16036924 + 0 NA Intergenic Intergenic 11077 ENSMUSG00000117711.1 ENSMUSG00000117711 ENSMUST00000235413 Rpl37-ps1 processed_pseudogene Interval_40846 chr12 108811092 108811475 + 0 NA intron (ENSMUSG00000021264.12, intron 1 of 3) protein_coding-intron (ENSMUSG00000021264.12, intron 2 of 4) 5044 ENSMUSG00000021264.12 ENSMUSG00000021264 ENSMUST00000126912 Yy1 protein_coding Interval_58806 chr15 38181680 38182823 + 0 NA Intergenic Intergenic 19966 ENSMUSG00000115680.1 ENSMUSG00000115680 ENSMUST00000227576 Gm35167 lincRNA Interval_159625 chr8 95845761 95845984 + 0 NA exon (ENSMUSG00000036534.6, exon 5 of 12) protein_coding-exon (ENSMUSG00000036534.6, exon 5 of 12) 7650 ENSMUSG00000036534.6 ENSMUSG00000036534 ENSMUST00000153835 Slc38a7 protein_coding Interval_15047 chr10 42202447 42203507 + 0 NA intron (ENSMUSG00000048756.11, intron 2 of 2) protein_coding-intron (ENSMUSG00000048756.11, intron 2 of 3) 55389 ENSMUSG00000048756.11 ENSMUSG00000048756 ENSMUST00000105501 Foxo3 protein_coding Interval_140175 chr6 115009788 115010357 + 0 NA TTS (ENSMUSG00000030316.13) protein_coding-TTS (ENSMUSG00000030316.13) 27783 ENSMUSG00000030316.13 ENSMUSG00000030316 ENSMUST00000144445 Tamm41 protein_coding Interval_81683 chr18 63406701 63407208 + 0 NA intron (ENSMUSG00000097980.2, intron 2 of 2) lincRNA-intron (ENSMUSG00000097980.2, intron 2 of 2) -10300 ENSMUSG00000097980.2 ENSMUSG00000097980 ENSMUST00000237281 Gm26972 lincRNA Interval_16334 chr10 62295838 62296825 + 0 NA TTS (ENSMUSG00000037012.18) protein_coding-TTS (ENSMUSG00000037012.18) -6002 ENSMUSG00000037012.18 ENSMUSG00000037012 ENSMUST00000149534 Hk1 protein_coding Interval_118664 chr4 133068484 133069235 + 0 NA intron (ENSMUSG00000037692.14, intron 6 of 6) protein_coding-intron (ENSMUSG00000037692.14, intron 5 of 5) 57021 ENSMUSG00000037692.14 ENSMUSG00000037692 ENSMUST00000148518 Ahdc1 protein_coding Interval_37899 chr12 72917143 72918242 + 0 NA promoter-TSS (ENSMUSG00000021098.14) protein_coding-promoter-TSS (ENSMUSG00000021098.14) -11415 ENSMUSG00000021098.14 ENSMUSG00000021098 ENSMUST00000132067 4930447C04Rik protein_coding Interval_97073 chr2 131029553 131029913 + 0 NA exon (ENSMUSG00000027312.14, exon 29 of 29) protein_coding-exon (ENSMUSG00000027312.14, exon 29 of 29) 10665 ENSMUSG00000098686.1 ENSMUSG00000098686 ENSMUST00000184185 Mir6973b miRNA Interval_41037 chr12 110753671 110754811 + 0 NA intron (ENSMUSG00000037957.14, intron 1 of 4) protein_coding-intron (ENSMUSG00000037957.14, intron 1 of 2) 16032 ENSMUSG00000037957.14 ENSMUSG00000037957 ENSMUST00000194118 Wdr20 protein_coding Interval_36573 chr12 50648207 50649753 + 0 NA exon (ENSMUSG00000002688.8, exon 1 of 19) protein_coding-exon (ENSMUSG00000002688.8, exon 1 of 19) 118 ENSMUSG00000002688.8 ENSMUSG00000002688 ENSMUST00000002765 Prkd1 protein_coding Interval_144516 chr7 25637596 25637808 + 0 NA intron (ENSMUSG00000060376.7, intron 4 of 8) protein_coding-intron (ENSMUSG00000060376.7, intron 4 of 8) -5959 ENSMUSG00000060376.7 ENSMUSG00000060376 ENSMUST00000071329 Bckdha protein_coding Interval_160664 chr8 111445585 111446464 + 0 NA Intergenic Intergenic -4176 ENSMUSG00000098410.1 ENSMUSG00000098410 ENSMUST00000184608 Mir1957b miRNA Interval_109239 chr3 138184626 138184871 + 0 NA intron (ENSMUSG00000012042.9, intron 4 of 10) protein_coding-intron (ENSMUSG00000012042.9, intron 1 of 7) -36723 ENSMUSG00000055301.8 ENSMUSG00000055301 ENSMUST00000196133 Adh7 protein_coding Interval_159725 chr8 99525813 99526020 + 0 NA intron (ENSMUSG00000052479.5, intron 1 of 4) lincRNA-intron (ENSMUSG00000052479.5, intron 1 of 4) -19146 ENSMUSG00000090116.1 ENSMUSG00000090116 ENSMUST00000161597 Gm15680 sense_overlapping Interval_123026 chr5 28596487 28597718 + 0 NA intron (ENSMUSG00000097726.7, intron 2 of 6) antisense-intron (ENSMUSG00000097726.7, intron 2 of 6) 19829 ENSMUSG00000104587.1 ENSMUSG00000104587 ENSMUST00000197020 Gm43161 TEC Interval_34897 chr12 13085435 13085932 + 0 NA Intergenic Intergenic -17162 ENSMUSG00000112988.1 ENSMUSG00000112988 ENSMUST00000222719 Gm35298 lincRNA Interval_122786 chr5 25471622 25472599 + 0 NA intron (ENSMUSG00000038056.15, intron 1 of 13) protein_coding-intron (ENSMUSG00000038056.15, intron 1 of 58) 21805 ENSMUSG00000092510.1 ENSMUSG00000092510 ENSMUST00000172802 Gm18343 processed_pseudogene Interval_104004 chr3 57054678 57054904 + 0 NA TTS (ENSMUSG00000077190.1) snoRNA-TTS (ENSMUSG00000077190.1) 641 ENSMUSG00000077190.1 ENSMUSG00000077190 ENSMUST00000104002 Gm22269 snoRNA Interval_76494 chr17 80583148 80583417 + 0 NA exon (ENSMUSG00000024242.15, exon 1 of 2) protein_coding-exon (ENSMUSG00000024242.15, exon 1 of 2) -5469 ENSMUSG00000033966.8 ENSMUSG00000033966 ENSMUST00000234349 Cdkl4 protein_coding Interval_171966 chr9 123005912 123006566 + 0 NA intron (ENSMUSG00000036768.6, intron 26 of 34) protein_coding-intron (ENSMUSG00000036768.6, intron 26 of 34) -11179 ENSMUSG00000036768.6 ENSMUSG00000036768 ENSMUST00000217612 Kif15 protein_coding Interval_46480 chr13 66469493 66469757 + 0 NA Intergenic Intergenic -14271 ENSMUSG00000114343.1 ENSMUSG00000114343 ENSMUST00000225113 Gm48322 processed_pseudogene Interval_12245 chr1 191081595 191082080 + 0 NA intron (ENSMUSG00000062510.12, intron 5 of 5) protein_coding-intron (ENSMUSG00000062510.12, intron 5 of 5) -3157 ENSMUSG00000103576.1 ENSMUSG00000103576 ENSMUST00000192879 Gm38188 antisense Interval_100895 chr2 173217279 173218221 + 0 NA intron (ENSMUSG00000027514.14, intron 1 of 6) protein_coding-intron (ENSMUSG00000027514.14, intron 1 of 7) 1147 ENSMUSG00000027514.14 ENSMUSG00000027514 ENSMUST00000109116 Zbp1 protein_coding Interval_25481 chr11 48853113 48853714 + 0 NA promoter-TSS (ENSMUSG00000086245.1) antisense-promoter-TSS (ENSMUSG00000086245.1) 80 ENSMUSG00000086245.1 ENSMUSG00000086245 ENSMUST00000156882 Gm16170 antisense Interval_81404 chr18 60548535 60548806 + 0 NA intron (ENSMUSG00000024603.8, intron 9 of 13) protein_coding-intron (ENSMUSG00000024603.8, intron 8 of 12) 10240 ENSMUSG00000024603.8 ENSMUSG00000024603 ENSMUST00000224671 Dctn4 protein_coding Interval_98180 chr2 149546094 149546483 + 0 NA Intergenic Intergenic 19997 ENSMUSG00000089270.1 ENSMUSG00000089270 ENSMUST00000158645 Gm24551 snoRNA Interval_32594 chr11 108961007 108962055 + 0 NA Intergenic Intergenic -19516 ENSMUSG00000086268.1 ENSMUSG00000086268 ENSMUST00000143435 Gm11670 antisense Interval_103707 chr3 51788098 51789725 + 0 NA intron (ENSMUSG00000061143.15, intron 2 of 4) protein_coding-intron (ENSMUSG00000061143.15, intron 1 of 3) 7663 ENSMUSG00000061143.15 ENSMUSG00000061143 ENSMUST00000193568 Maml3 protein_coding Interval_23550 chr11 23305511 23307438 + 0 NA promoter-TSS (ENSMUSG00000056342.16) protein_coding-promoter-TSS (ENSMUSG00000056342.16) -421 ENSMUSG00000056342.16 ENSMUSG00000056342 ENSMUST00000125701 Usp34 protein_coding Interval_147010 chr7 58100076 58100746 + 0 NA Intergenic Intergenic 47816 ENSMUSG00000077356.1 ENSMUSG00000077356 ENSMUST00000104168 Gm26288 snoRNA Interval_65073 chr16 18870189 18871230 + 0 NA intron (ENSMUSG00000099908.1, intron 2 of 23) protein_coding-intron (ENSMUSG00000099908.1, intron 2 of 23) 5900 ENSMUSG00000022706.16 ENSMUSG00000022706 ENSMUST00000232123 Mrpl40 protein_coding Interval_162280 chr8 126696647 126697532 + 0 NA Intergenic Intergenic 61245 ENSMUSG00000110626.1 ENSMUSG00000110626 ENSMUST00000212695 Gm45805 lincRNA Interval_85842 chr19 32288669 32289137 + 0 NA TTS (ENSMUSG00000040451.18) protein_coding-TTS (ENSMUSG00000040451.18) -11939 ENSMUSG00000040451.18 ENSMUSG00000040451 ENSMUST00000141252 Sgms1 protein_coding Interval_120716 chr4 150246834 150248554 + 0 NA TTS (ENSMUSG00000063524.13) protein_coding-TTS (ENSMUSG00000063524.13) 234 ENSMUSG00000063524.13 ENSMUSG00000063524 ENSMUST00000136310 Eno1 protein_coding Interval_83513 chr18 88642143 88642432 + 0 NA intron (ENSMUSG00000118352.1, intron 3 of 4) lincRNA-intron (ENSMUSG00000118352.1, intron 3 of 4) 16327 ENSMUSG00000118247.1 ENSMUSG00000118247 ENSMUST00000235328 Gm7662 processed_pseudogene Interval_158372 chr8 83109596 83110381 + 0 NA Intergenic Intergenic -23031 ENSMUSG00000109876.1 ENSMUSG00000109876 ENSMUST00000211485 Gm45449 antisense Interval_173777 chrX 103987224 103988099 + 0 NA Intergenic Intergenic -6377 ENSMUSG00000056537.11 ENSMUSG00000056537 ENSMUST00000135101 Rlim protein_coding Interval_157265 chr8 68804841 68805762 + 0 NA intron (ENSMUSG00000031864.16, intron 7 of 17) protein_coding-intron (ENSMUSG00000031864.16, intron 7 of 16) 6434 ENSMUSG00000081745.1 ENSMUSG00000081745 ENSMUST00000121595 Gm15549 processed_pseudogene Interval_63413 chr15 100918249 100918548 + 0 NA intron (ENSMUSG00000023033.14, intron 2 of 2) protein_coding-intron (ENSMUSG00000023033.14, intron 1 of 26) -51724 ENSMUSG00000023033.14 ENSMUSG00000023033 ENSMUST00000201246 Scn8a protein_coding Interval_159827 chr8 104129132 104130272 + 0 NA intron (ENSMUSG00000031871.9, intron 6 of 11) protein_coding-intron (ENSMUSG00000031871.9, intron 6 of 11) 18395 ENSMUSG00000031871.9 ENSMUSG00000031871 ENSMUST00000209911 Cdh5 protein_coding Interval_84406 chr19 10671257 10672164 + 0 NA promoter-TSS (ENSMUSG00000024738.6) protein_coding-promoter-TSS (ENSMUSG00000024738.6) -737 ENSMUSG00000024738.6 ENSMUSG00000024738 ENSMUST00000225016 Pga5 protein_coding Interval_153340 chr7 143756411 143757513 + 0 NA promoter-TSS (ENSMUSG00000037606.18) protein_coding-promoter-TSS (ENSMUSG00000037606.18) 8614 ENSMUSG00000050276.7 ENSMUSG00000050276 ENSMUST00000208986 Mrgprg protein_coding Interval_11083 chr1 179232101 179232640 + 0 NA intron (ENSMUSG00000055067.15, intron 1 of 8) protein_coding-intron (ENSMUSG00000055067.15, intron 1 of 8) 285635 ENSMUSG00000055067.15 ENSMUSG00000055067 ENSMUST00000194237 Smyd3 protein_coding Interval_58392 chr15 34096195 34096406 + 0 NA intron (ENSMUSG00000022255.16, intron 1 of 5) protein_coding-intron (ENSMUSG00000022255.16, intron 1 of 11) -30644 ENSMUSG00000115276.1 ENSMUSG00000115276 ENSMUST00000228274 9930017N22Rik TEC Interval_112649 chr4 43798391 43799682 + 0 NA exon (ENSMUSG00000081329.1, exon 2 of 2) processed_pseudogene-exon (ENSMUSG00000081329.1, exon 2 of 2) 1219 ENSMUSG00000081329.1 ENSMUSG00000081329 ENSMUST00000117665 Gm12492 processed_pseudogene Interval_94668 chr2 93176687 93177859 + 0 NA Intergenic Intergenic -10275 ENSMUSG00000068735.14 ENSMUSG00000068735 ENSMUST00000143164 Trp53i11 protein_coding Interval_60825 chr15 76986889 76988627 + 0 NA promoter-TSS (ENSMUSG00000116339.1) lincRNA-promoter-TSS (ENSMUSG00000116339.1) -266 ENSMUSG00000116339.1 ENSMUSG00000116339 ENSMUST00000230431 Gm35933 lincRNA Interval_98682 chr2 154242169 154243036 + 0 NA Intergenic Intergenic -15252 ENSMUSG00000067998.11 ENSMUSG00000067998 ENSMUST00000126084 Bpifb9a protein_coding Interval_174628 chrX 160492270 160492777 + 0 NA intron (ENSMUSG00000031298.15, intron 27 of 27) protein_coding-intron (ENSMUSG00000031298.15, intron 27 of 27) 7347 ENSMUSG00000087505.1 ENSMUSG00000087505 ENSMUST00000125700 Gm15241 antisense Interval_153374 chr7 144160201 144160568 + 0 NA intron (ENSMUSG00000037541.22, intron 10 of 17) protein_coding-intron (ENSMUSG00000037541.22, intron 10 of 22) -49299 ENSMUSG00000109500.1 ENSMUSG00000109500 ENSMUST00000207456 Gm44999 TEC Interval_133085 chr5 149713358 149713554 + 0 NA intron (ENSMUSG00000051950.10, intron 4 of 14) protein_coding-intron (ENSMUSG00000051950.10, intron 4 of 14) -26076 ENSMUSG00000051950.10 ENSMUSG00000051950 ENSMUST00000201088 B3glct protein_coding Interval_131773 chr5 139797052 139797565 + 0 NA promoter-TSS (ENSMUSG00000018143.10) protein_coding-promoter-TSS (ENSMUSG00000018143.10) 5774 ENSMUSG00000018143.10 ENSMUSG00000018143 ENSMUST00000110836 Mafk protein_coding Interval_26699 chr11 59809143 59810758 + 0 NA promoter-TSS (ENSMUSG00000032633.12) protein_coding-promoter-TSS (ENSMUSG00000032633.12) -130 ENSMUSG00000087249.1 ENSMUSG00000087249 ENSMUST00000151825 Gm16062 antisense Interval_50865 chr14 20309912 20310668 + 0 NA promoter-TSS (ENSMUSG00000021809.10) protein_coding-promoter-TSS (ENSMUSG00000021809.10) -1139 ENSMUSG00000021809.10 ENSMUSG00000021809 ENSMUST00000225728 Nudt13 protein_coding Interval_43709 chr13 35566102 35567982 + 0 NA Intergenic Intergenic 23140 ENSMUSG00000114337.1 ENSMUSG00000114337 ENSMUST00000225154 Gm48704 lincRNA Interval_171870 chr9 121898267 121898459 + 0 NA promoter-TSS (ENSMUSG00000044534.8) protein_coding-promoter-TSS (ENSMUSG00000044534.8) -7901 ENSMUSG00000044534.8 ENSMUSG00000044534 ENSMUST00000216326 Ackr2 protein_coding Interval_161661 chr8 121865954 121866141 + 0 NA intron (ENSMUSG00000092329.1, intron 1 of 15) protein_coding-intron (ENSMUSG00000092329.1, intron 1 of 15) -8444 ENSMUSG00000098109.1 ENSMUSG00000098109 ENSMUST00000182121 9530085P06Rik TEC Interval_86614 chr19 42059707 42060831 + 0 NA TTS (ENSMUSG00000025176.14) protein_coding-TTS (ENSMUSG00000025176.14) 8021 ENSMUSG00000090369.3 ENSMUSG00000090369 ENSMUST00000164518 4933411K16Rik protein_coding Interval_34675 chr12 8546936 8547883 + 0 NA intron (ENSMUSG00000020600.13, intron 2 of 6) protein_coding-intron (ENSMUSG00000020600.13, intron 2 of 6) -7864 ENSMUSG00000020600.13 ENSMUSG00000020600 ENSMUST00000129465 Slc7a15 protein_coding Interval_102648 chr3 28859558 28860522 + 0 NA Intergenic Intergenic -5783 ENSMUSG00000104275.1 ENSMUSG00000104275 ENSMUST00000192066 Gm37867 lincRNA Interval_116401 chr4 111495944 111496294 + 0 NA intron (ENSMUSG00000061298.14, intron 2 of 6) protein_coding-intron (ENSMUSG00000061298.14, intron 6 of 12) 62922 ENSMUSG00000028545.13 ENSMUSG00000028545 ENSMUST00000123667 Bend5 protein_coding Interval_51310 chr14 26311070 26311957 + 0 NA Intergenic Intergenic 8808 ENSMUSG00000114921.1 ENSMUSG00000114921 ENSMUST00000223947 Gm18578 processed_pseudogene Interval_104341 chr3 63725803 63726011 + 0 NA intron (ENSMUSG00000036834.16, intron 11 of 22) protein_coding-intron (ENSMUSG00000036834.16, intron 10 of 21) -44305 ENSMUSG00000088360.1 ENSMUSG00000088360 ENSMUST00000157735 Gm23500 snRNA Interval_46828 chr13 71749653 71750769 + 0 NA intron (ENSMUSG00000114038.1, intron 3 of 7) processed_transcript-intron (ENSMUSG00000114038.1, intron 3 of 7) 35684 ENSMUSG00000114038.1 ENSMUSG00000114038 ENSMUST00000223183 Gm40999 processed_transcript Interval_153520 chr8 3065621 3065879 + 0 NA Intergenic Intergenic 9456 ENSMUSG00000108612.2 ENSMUSG00000108612 ENSMUST00000206119 Gm44634 unprocessed_pseudogene Interval_8034 chr1 135331412 135331845 + 0 NA intron (ENSMUSG00000048096.7, intron 1 of 2) protein_coding-intron (ENSMUSG00000048096.7, intron 1 of 2) 6821 ENSMUSG00000048096.7 ENSMUSG00000048096 ENSMUST00000059352 Lmod1 protein_coding Interval_104706 chr3 69587867 69588584 + 0 NA intron (ENSMUSG00000043300.2, intron 1 of 2) protein_coding-intron (ENSMUSG00000043300.2, intron 1 of 2) 10735 ENSMUSG00000043300.2 ENSMUSG00000043300 ENSMUST00000061826 B3galnt1 protein_coding Interval_123343 chr5 31586850 31587253 + 0 NA Intergenic Intergenic 5972 ENSMUSG00000107015.1 ENSMUSG00000107015 ENSMUST00000202297 2900076G11Rik TEC Interval_151950 chr7 127726126 127726480 + 0 NA promoter-TSS (ENSMUSG00000060034.5) protein_coding-promoter-TSS (ENSMUSG00000060034.5) 5863 ENSMUSG00000060034.5 ENSMUSG00000060034 ENSMUST00000206038 Ctf2 protein_coding Interval_86582 chr19 41869560 41869810 + 0 NA intron (ENSMUSG00000035049.4, intron 29 of 33) protein_coding-intron (ENSMUSG00000035049.4, intron 29 of 33) -21553 ENSMUSG00000047604.3 ENSMUSG00000047604 ENSMUST00000059231 Frat2 protein_coding Interval_163187 chr9 17533542 17533754 + 0 NA Intergenic Intergenic 9669 ENSMUSG00000111534.1 ENSMUSG00000111534 ENSMUST00000214184 Gm48846 processed_pseudogene Interval_47697 chr13 91386499 91386755 + 0 NA intron (ENSMUSG00000097182.2, intron 1 of 2) lincRNA-intron (ENSMUSG00000097182.2, intron 1 of 2) 1458 ENSMUSG00000097182.2 ENSMUSG00000097182 ENSMUST00000181054 A830009L08Rik lincRNA Interval_163279 chr9 20514693 20515095 + 0 NA intron (ENSMUSG00000060510.14, intron 1 of 4) protein_coding-intron (ENSMUSG00000060510.14, intron 2 of 8) 6523 ENSMUSG00000060510.14 ENSMUSG00000060510 ENSMUST00000213275 Zfp266 protein_coding Interval_76868 chr17 84626204 84627370 + 0 NA promoter-TSS (ENSMUSG00000117647.1) antisense-promoter-TSS (ENSMUSG00000117647.1) -392 ENSMUSG00000117647.1 ENSMUSG00000117647 ENSMUST00000234641 Gm49969 antisense Interval_46994 chr13 74061980 74062611 + 0 NA promoter-TSS (ENSMUSG00000021572.9) protein_coding-promoter-TSS (ENSMUSG00000021572.9) -10054 ENSMUSG00000021572.9 ENSMUSG00000021572 ENSMUST00000220483 Cep72 protein_coding Interval_146280 chr7 45103660 45104296 + 0 NA promoter-TSS (ENSMUSG00000003420.8) protein_coding-promoter-TSS (ENSMUSG00000003420.8) -223 ENSMUSG00000003420.8 ENSMUSG00000003420 ENSMUST00000211535 Fcgrt protein_coding Interval_79926 chr18 35977308 35977774 + 0 NA intron (ENSMUSG00000024347.16, intron 1 of 14) protein_coding-intron (ENSMUSG00000024347.16, intron 1 of 14) 12474 ENSMUSG00000024347.16 ENSMUSG00000024347 ENSMUST00000175720 Psd2 protein_coding Interval_112632 chr4 43711812 43712238 + 0 NA Intergenic Intergenic -1794 ENSMUSG00000046450.3 ENSMUSG00000046450 ENSMUST00000055401 Olfr71 protein_coding Interval_134066 chr6 18638132 18639303 + 0 NA Intergenic Intergenic -88575 ENSMUSG00000095722.1 ENSMUSG00000095722 ENSMUST00000180301 Gm23648 snRNA Interval_83091 chr18 81202876 81203316 + 0 NA Intergenic Intergenic 32970 ENSMUSG00000097181.1 ENSMUSG00000097181 ENSMUST00000181204 4930594M17Rik lincRNA Interval_160391 chr8 108906756 108907672 + 0 NA intron (ENSMUSG00000038872.10, intron 10 of 15) protein_coding-intron (ENSMUSG00000038872.10, intron 4 of 9) 14660 ENSMUSG00000093697.1 ENSMUSG00000093697 ENSMUST00000175846 Gm20686 antisense Interval_118147 chr4 129226612 129227194 + 0 NA intron (ENSMUSG00000050390.12, intron 1 of 3) protein_coding-intron (ENSMUSG00000050390.12, intron 1 of 6) 577 ENSMUSG00000050390.12 ENSMUSG00000050390 ENSMUST00000146376 C77080 protein_coding Interval_90007 chr2 27278558 27278784 + 0 NA exon (ENSMUSG00000009621.18, exon 1 of 7) protein_coding-exon (ENSMUSG00000009621.18, exon 1 of 7) -48033 ENSMUSG00000086669.1 ENSMUSG00000086669 ENSMUST00000156020 AA645442 antisense Interval_42396 chr13 12662845 12664021 + 0 NA Intergenic Intergenic -2618 ENSMUSG00000088112.1 ENSMUSG00000088112 ENSMUST00000157487 Gm24065 misc_RNA Interval_16337 chr10 62320155 62320646 + 0 NA intron (ENSMUSG00000037012.18, intron 5 of 5) protein_coding-intron (ENSMUSG00000037012.18, intron 2 of 19) -20207 ENSMUSG00000085347.1 ENSMUSG00000085347 ENSMUST00000142968 Hk1os antisense Interval_171171 chr9 114953057 114953313 + 0 NA Intergenic Intergenic -19198 ENSMUSG00000050627.13 ENSMUSG00000050627 ENSMUST00000146266 Gpd1l protein_coding Interval_102644 chr3 28836743 28837527 + 0 NA Intergenic Intergenic 17122 ENSMUSG00000104275.1 ENSMUSG00000104275 ENSMUST00000192066 Gm37867 lincRNA Interval_170215 chr9 106247395 106248406 + 0 NA promoter-TSS (ENSMUSG00000032786.16) protein_coding-promoter-TSS (ENSMUSG00000032786.16) -30 ENSMUSG00000032786.16 ENSMUSG00000032786 ENSMUST00000215222 Alas1 protein_coding Interval_49537 chr13 112798393 112799361 + 0 NA Intergenic Intergenic -1986 ENSMUSG00000021759.14 ENSMUSG00000021759 ENSMUST00000070951 Plpp1 protein_coding Interval_125447 chr5 67230096 67232092 + 0 NA Intergenic Intergenic -29660 ENSMUSG00000037720.16 ENSMUSG00000037720 ENSMUST00000163028 Tmem33 protein_coding Interval_107104 chr3 103574971 103576737 + 0 NA promoter-TSS (ENSMUSG00000027849.19) protein_coding-promoter-TSS (ENSMUSG00000027849.19) 476 ENSMUSG00000027849.19 ENSMUSG00000027849 ENSMUST00000118563 Syt6 protein_coding Interval_127047 chr5 99927735 99928619 + 0 NA TTS (ENSMUSG00000089062.1) snRNA-TTS (ENSMUSG00000089062.1) 204 ENSMUSG00000089062.1 ENSMUSG00000089062 ENSMUST00000158437 Gm22838 snRNA Interval_12106 chr1 189778205 189779526 + 0 NA intron (ENSMUSG00000026604.17, intron 1 of 9) protein_coding-intron (ENSMUSG00000026604.17, intron 1 of 18) -48365 ENSMUSG00000102248.1 ENSMUSG00000102248 ENSMUST00000192214 Gm30280 processed_pseudogene Interval_107612 chr3 108880407 108882088 + 0 NA promoter-TSS (ENSMUSG00000105175.1) processed_pseudogene-promoter-TSS (ENSMUSG00000105175.1) -576 ENSMUSG00000105175.1 ENSMUSG00000105175 ENSMUST00000196867 Gm43097 processed_pseudogene Interval_11342 chr1 181083983 181084582 + 0 NA Intergenic Intergenic -6847 ENSMUSG00000103178.1 ENSMUSG00000103178 ENSMUST00000195511 Fgfr3-ps processed_pseudogene Interval_25743 chr11 51280035 51280325 + 0 NA promoter-TSS (ENSMUSG00000020385.16) protein_coding-promoter-TSS (ENSMUSG00000020385.16) 9745 ENSMUSG00000093734.1 ENSMUSG00000093734 ENSMUST00000177296 Gm25082 misc_RNA Interval_157984 chr8 77548949 77550614 + 0 NA intron (ENSMUSG00000037134.17, intron 1 of 11) protein_coding-intron (ENSMUSG00000037134.17, intron 1 of 11) 327 ENSMUSG00000037134.17 ENSMUSG00000037134 ENSMUST00000156753 Prmt9 protein_coding Interval_113694 chr4 57689701 57691403 + 0 NA intron (ENSMUSG00000089945.13, intron 4 of 8) protein_coding-intron (ENSMUSG00000089945.13, intron 5 of 10) 52729 ENSMUSG00000089945.13 ENSMUSG00000089945 ENSMUST00000150412 Pakap protein_coding Interval_49111 chr13 108132561 108133701 + 0 NA intron (ENSMUSG00000068184.7, intron 1 of 3) protein_coding-intron (ENSMUSG00000068184.7, intron 1 of 3) 25353 ENSMUSG00000068184.7 ENSMUSG00000068184 ENSMUST00000225830 Ndufaf2 protein_coding Interval_100319 chr2 168365791 168366675 + 0 NA Intergenic Intergenic 30533 ENSMUSG00000064961.1 ENSMUSG00000064961 ENSMUST00000083027 Gm22704 snoRNA Interval_10780 chr1 174630080 174630561 + 0 NA intron (ENSMUSG00000028354.13, intron 2 of 3) protein_coding-intron (ENSMUSG00000028354.13, intron 6 of 17) 20511 ENSMUSG00000028354.13 ENSMUSG00000028354 ENSMUST00000193905 Fmn2 protein_coding Interval_72123 chr17 28168622 28168854 + 0 NA exon (ENSMUSG00000038677.14, exon 20 of 20) protein_coding-exon (ENSMUSG00000038677.14, exon 20 of 20) -8720 ENSMUSG00000024220.14 ENSMUSG00000024220 ENSMUST00000151595 Zfp523 protein_coding Interval_145515 chr7 35319571 35320041 + 0 NA Intergenic Intergenic -34487 ENSMUSG00000063808.14 ENSMUSG00000063808 ENSMUST00000153778 Gpatch1 protein_coding Interval_63854 chr16 4013908 4014453 + 0 NA Intergenic Intergenic -10410 ENSMUSG00000039738.16 ENSMUSG00000039738 ENSMUST00000171658 Slx4 protein_coding Interval_34722 chr12 8933705 8934041 + 0 NA intron (ENSMUSG00000020585.4, intron 2 of 6) protein_coding-intron (ENSMUSG00000020585.4, intron 2 of 6) 12209 ENSMUSG00000020585.4 ENSMUSG00000020585 ENSMUST00000020909 Laptm4a protein_coding Interval_114065 chr4 62921764 62922437 + 0 NA Intergenic Intergenic -17241 ENSMUSG00000087967.1 ENSMUSG00000087967 ENSMUST00000157342 Gm25391 snoRNA Interval_88282 chr2 3332136 3333456 + 0 NA promoter-TSS (ENSMUSG00000049950.6) protein_coding-promoter-TSS (ENSMUSG00000049950.6) -153 ENSMUSG00000049950.6 ENSMUSG00000049950 ENSMUST00000062672 Rpp38 protein_coding Interval_96279 chr2 121219608 121220877 + 0 NA intron (ENSMUSG00000043909.16, intron 1 of 1) protein_coding-intron (ENSMUSG00000043909.16, intron 16 of 26) 1137 ENSMUSG00000043909.16 ENSMUSG00000043909 ENSMUST00000124060 Trp53bp1 protein_coding Interval_135291 chr6 38096872 38097594 + 0 NA promoter-TSS (ENSMUSG00000038600.12) protein_coding-promoter-TSS (ENSMUSG00000038600.12) -12022 ENSMUSG00000029829.4 ENSMUSG00000029829 ENSMUST00000031851 Tmem213 protein_coding Interval_166092 chr9 56552624 56553242 + 0 NA Intergenic Intergenic 9177 ENSMUSG00000111201.1 ENSMUSG00000111201 ENSMUST00000216151 Gm47178 processed_pseudogene Interval_71222 chr17 21367844 21368620 + 0 NA intron (ENSMUSG00000116768.1, intron 1 of 2) processed_pseudogene-intron (ENSMUSG00000116768.1, intron 1 of 2) 1385 ENSMUSG00000116768.1 ENSMUSG00000116768 ENSMUST00000231877 Gm18269 processed_pseudogene Interval_100615 chr2 170480884 170481289 + 0 NA Intergenic Intergenic 16059 ENSMUSG00000038567.5 ENSMUSG00000038567 ENSMUST00000038824 Cyp24a1 protein_coding Interval_21948 chr11 5384673 5384985 + 0 NA intron (ENSMUSG00000041961.14, intron 1 of 3) protein_coding-intron (ENSMUSG00000041961.14, intron 1 of 8) -3089 ENSMUSG00000041961.14 ENSMUSG00000041961 ENSMUST00000143746 Znrf3 protein_coding Interval_15097 chr10 42554374 42554581 + 0 NA Intergenic Intergenic 26297 ENSMUSG00000019803.11 ENSMUSG00000019803 ENSMUST00000143891 Nr2e1 protein_coding Interval_141014 chr6 124378859 124380492 + 0 NA Intergenic Intergenic 4485 ENSMUSG00000108026.1 ENSMUSG00000108026 ENSMUST00000203845 Gm44007 TEC Interval_98186 chr2 149609036 149609409 + 0 NA Intergenic Intergenic -42937 ENSMUSG00000089270.1 ENSMUSG00000089270 ENSMUST00000158645 Gm24551 snoRNA Interval_145821 chr7 39586497 39587422 + 0 NA Intergenic Intergenic -1972 ENSMUSG00000074903.5 ENSMUSG00000074903 ENSMUST00000178791 Gm2058 processed_pseudogene Interval_114146 chr4 64658438 64658672 + 0 NA Intergenic Intergenic 199584 ENSMUSG00000081941.1 ENSMUSG00000081941 ENSMUST00000121364 Gm11218 processed_pseudogene Interval_1562 chr1 26285265 26285624 + 0 NA Intergenic Intergenic -180792 ENSMUSG00000099458.1 ENSMUSG00000099458 ENSMUST00000190716 Gm19123 processed_pseudogene Interval_19734 chr10 108368278 108368658 + 0 NA intron (ENSMUSG00000035873.8, intron 1 of 4) protein_coding-intron (ENSMUSG00000035873.8, intron 2 of 6) 4803 ENSMUSG00000065653.1 ENSMUSG00000065653 ENSMUST00000083719 Gm23105 snoRNA Interval_151439 chr7 122447861 122448373 + 0 NA TTS (ENSMUSG00000088299.1) misc_RNA-TTS (ENSMUSG00000088299.1) 1259 ENSMUSG00000088299.1 ENSMUSG00000088299 ENSMUST00000157674 Gm26414 misc_RNA Interval_64579 chr16 13446840 13448693 + 0 NA intron (ENSMUSG00000087526.2, intron 3 of 7) antisense-intron (ENSMUSG00000087526.2, intron 1 of 3) -1757 ENSMUSG00000076972.2 ENSMUSG00000076972 ENSMUST00000103784 Mir193b miRNA Interval_71278 chr17 21845316 21846549 + 0 NA promoter-TSS (ENSMUSG00000069743.5) protein_coding-promoter-TSS (ENSMUSG00000069743.5) -160 ENSMUSG00000069743.5 ENSMUSG00000069743 ENSMUST00000232918 Zfp820 protein_coding Interval_137027 chr6 66559556 66559786 + 0 NA intron (ENSMUSG00000062905.2, intron 1 of 2) protein_coding-intron (ENSMUSG00000062905.2, intron 1 of 2) 425 ENSMUSG00000062905.2 ENSMUSG00000062905 ENSMUST00000227014 Vmn1r32 protein_coding Interval_51049 chr14 21788364 21788566 + 0 NA intron (ENSMUSG00000021770.11, intron 4 of 5) protein_coding-intron (ENSMUSG00000021770.11, intron 4 of 5) -24246 ENSMUSG00000065836.1 ENSMUSG00000065836 ENSMUST00000083902 Gm23502 snRNA Interval_137757 chr6 82119036 82120250 + 0 NA Intergenic Intergenic -67062 ENSMUSG00000087136.1 ENSMUSG00000087136 ENSMUST00000145950 Gm15864 antisense Interval_109723 chr3 146324734 146325530 + 0 NA exon (ENSMUSG00000105209.1, exon 1 of 1) TEC-exon (ENSMUSG00000105209.1, exon 1 of 1) 712 ENSMUSG00000105209.1 ENSMUSG00000105209 ENSMUST00000197740 Gm43334 TEC Interval_20265 chr10 116532375 116532598 + 0 NA promoter-TSS (ENSMUSG00000093404.1) miRNA-promoter-TSS (ENSMUSG00000093404.1) -746 ENSMUSG00000093404.1 ENSMUSG00000093404 ENSMUST00000176664 Gm25190 miRNA Interval_155903 chr8 40920975 40921414 + 0 NA exon (ENSMUSG00000031596.15, exon 12 of 12) protein_coding-exon (ENSMUSG00000031596.15, exon 12 of 12) -5018 ENSMUSG00000031595.9 ENSMUSG00000031595 ENSMUST00000034004 Pdgfrl protein_coding Interval_81682 chr18 63404168 63404445 + 0 NA intron (ENSMUSG00000097980.2, intron 1 of 3) lincRNA-intron (ENSMUSG00000097980.2, intron 1 of 2) -12948 ENSMUSG00000097980.2 ENSMUSG00000097980 ENSMUST00000237281 Gm26972 lincRNA Interval_45690 chr13 56992205 56992563 + 0 NA Intergenic Intergenic -61436 ENSMUSG00000077279.1 ENSMUSG00000077279 ENSMUST00000104091 Gm22777 snoRNA Interval_88173 chr19 60284289 60284670 + 0 NA Intergenic Intergenic 42626 ENSMUSG00000099678.1 ENSMUSG00000099678 ENSMUST00000186261 Gm28351 lincRNA Interval_163429 chr9 21402043 21402346 + 0 NA TTS (ENSMUSG00000032178.14) protein_coding-TTS (ENSMUSG00000032178.14) 9526 ENSMUSG00000097665.1 ENSMUSG00000097665 ENSMUST00000181812 Gm16853 antisense Interval_72968 chr17 33873560 33876715 + 0 NA TTS (ENSMUSG00000079553.11) protein_coding-TTS (ENSMUSG00000079553.11) 1300 ENSMUSG00000115113.1 ENSMUSG00000115113 ENSMUST00000226885 Smim40-ps protein_coding Interval_172476 chrX 20920306 20921480 + 0 NA promoter-TSS (ENSMUSG00000037217.15) protein_coding-promoter-TSS (ENSMUSG00000037217.15) 111 ENSMUSG00000037217.15 ENSMUSG00000037217 ENSMUST00000081893 Syn1 protein_coding Interval_169335 chr9 96499367 96499743 + 0 NA intron (ENSMUSG00000099564.2, intron 7 of 10) protein_coding-intron (ENSMUSG00000099564.2, intron 7 of 10) -4342 ENSMUSG00000099049.1 ENSMUSG00000099049 ENSMUST00000183341 Gm27289 rRNA Interval_348 chr1 4416532 4417300 + 0 NA Intergenic Intergenic -7675 ENSMUSG00000025900.13 ENSMUSG00000025900 ENSMUST00000027032 Rp1 protein_coding Interval_47441 chr13 84272750 84273993 + 0 NA exon (ENSMUSG00000035762.11, exon 4 of 4) protein_coding-exon (ENSMUSG00000035762.11, exon 4 of 4) -1473 ENSMUSG00000114602.1 ENSMUSG00000114602 ENSMUST00000224744 Gm49223 sense_intronic Interval_19529 chr10 102372087 102372278 + 0 NA exon (ENSMUSG00000019888.16, exon 1 of 1) protein_coding-exon (ENSMUSG00000019888.16, exon 1 of 1) -43701 ENSMUSG00000111990.1 ENSMUSG00000111990 ENSMUST00000218629 Gm47033 lincRNA Interval_163249 chr9 19594685 19595320 + 0 NA Intergenic Intergenic 12385 ENSMUSG00000043087.5 ENSMUSG00000043087 ENSMUST00000061693 Olfr855 protein_coding Interval_101887 chr3 10390355 10391046 + 0 NA exon (ENSMUSG00000027536.6, exon 5 of 5) protein_coding-exon (ENSMUSG00000027536.6, exon 5 of 5) 23742 ENSMUSG00000027536.6 ENSMUSG00000027536 ENSMUST00000191826 Chmp4c protein_coding Interval_89951 chr2 26685829 26687342 + 0 NA Intergenic Intergenic -15303 ENSMUSG00000026919.1 ENSMUSG00000026919 ENSMUST00000028283 Lcn4 protein_coding Interval_166491 chr9 60041784 60042014 + 0 NA TTS (ENSMUSG00000088090.1) rRNA-TTS (ENSMUSG00000088090.1) 280 ENSMUSG00000088090.1 ENSMUSG00000088090 ENSMUST00000157465 Gm23668 rRNA Interval_25556 chr11 49743101 49743328 + 0 NA Intergenic Intergenic -28619 ENSMUSG00000092894.1 ENSMUSG00000092894 ENSMUST00000175153 Gm23813 miRNA Interval_36384 chr12 42972736 42973001 + 0 NA intron (ENSMUSG00000112407.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000112407.1, intron 3 of 3) 42591 ENSMUSG00000112407.1 ENSMUSG00000112407 ENSMUST00000219475 Gm33340 lincRNA Interval_96690 chr2 127182386 127183596 + 0 NA Intergenic Intergenic 25263 ENSMUSG00000044145.2 ENSMUSG00000044145 ENSMUST00000150956 1810024B03Rik protein_coding Interval_156607 chr8 54518872 54519688 + 0 NA Intergenic Intergenic -5130 ENSMUSG00000110403.1 ENSMUSG00000110403 ENSMUST00000209929 Gm45553 TEC Interval_159079 chr8 89784981 89785516 + 0 NA Intergenic Intergenic -117944 ENSMUSG00000088883.1 ENSMUSG00000088883 ENSMUST00000158258 Gm24212 snoRNA Interval_41866 chr13 3665135 3665893 + 0 NA Intergenic Intergenic 16977 ENSMUSG00000088475.1 ENSMUSG00000088475 ENSMUST00000157850 Gm23084 rRNA Interval_64260 chr16 9954293 9954924 + 0 NA intron (ENSMUSG00000059003.12, intron 3 of 13) protein_coding-intron (ENSMUSG00000059003.12, intron 1 of 11) 40315 ENSMUSG00000059003.12 ENSMUSG00000059003 ENSMUST00000197242 Grin2a protein_coding Interval_9936 chr1 164240231 164240672 + 0 NA Intergenic Intergenic -8802 ENSMUSG00000040918.12 ENSMUSG00000040918 ENSMUST00000160773 Slc19a2 protein_coding Interval_10957 chr1 177559268 177559609 + 0 NA Intergenic Intergenic 35084 ENSMUSG00000102885.1 ENSMUSG00000102885 ENSMUST00000194583 Gm37280 lincRNA Interval_119678 chr4 139169114 139170509 + 0 NA Intergenic Intergenic 10844 ENSMUSG00000073739.3 ENSMUSG00000073739 ENSMUST00000097827 Gm16287 antisense Interval_27931 chr11 70960325 70961318 + 0 NA intron (ENSMUSG00000040667.11, intron 4 of 14) protein_coding-intron (ENSMUSG00000040667.11, intron 4 of 16) -3908 ENSMUSG00000040667.11 ENSMUSG00000040667 ENSMUST00000145336 Nup88 protein_coding Interval_30806 chr11 96609409 96610196 + 0 NA intron (ENSMUSG00000057058.16, intron 4 of 7) protein_coding-intron (ENSMUSG00000057058.16, intron 4 of 11) 126020 ENSMUSG00000057058.16 ENSMUSG00000057058 ENSMUST00000123814 Skap1 protein_coding Interval_62589 chr15 95037313 95037976 + 0 NA intron (ENSMUSG00000063296.5, intron 6 of 7) protein_coding-intron (ENSMUSG00000063296.5, intron 6 of 7) -50506 ENSMUSG00000077447.1 ENSMUSG00000077447 ENSMUST00000104259 Gm23129 snoRNA Interval_55921 chr14 102440870 102441530 + 0 NA intron (ENSMUSG00000115696.1, intron 4 of 4) lincRNA-intron (ENSMUSG00000115696.1, intron 4 of 4) 4177 ENSMUSG00000115696.1 ENSMUSG00000115696 ENSMUST00000228104 Gm49292 lincRNA Interval_123511 chr5 33082433 33082695 + 0 NA Intergenic Intergenic 6526 ENSMUSG00000093885.2 ENSMUSG00000093885 ENSMUST00000137013 Rpl35a-ps5 processed_pseudogene Interval_157780 chr8 73103525 73104957 + 0 NA intron (ENSMUSG00000004383.18, intron 5 of 15) protein_coding-intron (ENSMUSG00000004383.18, intron 4 of 14) 71017 ENSMUSG00000089447.1 ENSMUSG00000089447 ENSMUST00000158822 Gm22532 snoRNA Interval_132291 chr5 143966869 143967138 + 0 NA intron (ENSMUSG00000075569.10, intron 5 of 9) protein_coding-intron (ENSMUSG00000075569.10, intron 15 of 20) 7311 ENSMUSG00000075569.10 ENSMUSG00000075569 ENSMUST00000164604 Rsph10b protein_coding Interval_77362 chr17 88251643 88252598 + 0 NA Intergenic Intergenic 53258 ENSMUSG00000117497.1 ENSMUSG00000117497 ENSMUST00000234925 1700116H05Rik lincRNA Interval_119496 chr4 137939141 137939341 + 0 NA intron (ENSMUSG00000057530.14, intron 9 of 19) protein_coding-intron (ENSMUSG00000057530.14, intron 9 of 19) 25770 ENSMUSG00000057530.14 ENSMUSG00000057530 ENSMUST00000129607 Ece1 protein_coding Interval_121392 chr4 155490925 155492606 + 0 NA intron (ENSMUSG00000029064.15, intron 1 of 10) protein_coding-intron (ENSMUSG00000029064.15, intron 1 of 11) 10941 ENSMUSG00000082429.1 ENSMUSG00000082429 ENSMUST00000117233 Gm13171 processed_pseudogene Interval_45310 chr13 54231966 54232408 + 0 NA intron (ENSMUSG00000034987.4, intron 2 of 2) protein_coding-intron (ENSMUSG00000034987.4, intron 1 of 1) -9164 ENSMUSG00000090016.1 ENSMUSG00000090016 ENSMUST00000160797 Gm16578 antisense Interval_20960 chr10 122785002 122785211 + 0 NA intron (ENSMUSG00000034613.12, intron 2 of 5) protein_coding-intron (ENSMUSG00000034613.12, intron 2 of 9) -7041 ENSMUSG00000111957.1 ENSMUSG00000111957 ENSMUST00000218987 Gm47582 TEC Interval_164866 chr9 42614229 42614621 + 0 NA intron (ENSMUSG00000032017.14, intron 11 of 20) protein_coding-intron (ENSMUSG00000032017.14, intron 9 of 18) -93594 ENSMUSG00000093745.1 ENSMUSG00000093745 ENSMUST00000176676 Gm24420 misc_RNA Interval_108323 chr3 123801603 123802649 + 0 NA Intergenic Intergenic 40799 ENSMUSG00000080842.2 ENSMUSG00000080842 ENSMUST00000118944 Gm15400 processed_pseudogene Interval_133874 chr6 13876727 13877123 + 0 NA intron (ENSMUSG00000097616.7, intron 1 of 2) lincRNA-intron (ENSMUSG00000097616.7, intron 1 of 2) 5356 ENSMUSG00000097616.7 ENSMUSG00000097616 ENSMUST00000181225 1110019D14Rik lincRNA Interval_78793 chr18 20673204 20673697 + 0 NA intron (ENSMUSG00000061808.4, intron 3 of 3) protein_coding-intron (ENSMUSG00000061808.4, intron 3 of 3) 8170 ENSMUSG00000061808.4 ENSMUSG00000061808 ENSMUST00000075312 Ttr protein_coding Interval_53220 chr14 55214357 55214842 + 0 NA Intergenic Intergenic -20055 ENSMUSG00000022209.12 ENSMUSG00000022209 ENSMUST00000165432 Dhrs2 protein_coding Interval_167581 chr9 70620891 70621386 + 0 NA intron (ENSMUSG00000042444.10, intron 5 of 8) protein_coding-intron (ENSMUSG00000042444.10, intron 5 of 8) -35113 ENSMUSG00000074213.3 ENSMUSG00000074213 ENSMUST00000238671 Gm10642 antisense Interval_64922 chr16 17242184 17245576 + 0 NA intron (ENSMUSG00000116743.1, intron 1 of 3) protein_coding-intron (ENSMUSG00000050240.16, intron 1 of 2) 10216 ENSMUSG00000050240.16 ENSMUSG00000050240 ENSMUST00000232082 Hic2 protein_coding Interval_22162 chr11 6712966 6713711 + 0 NA Intergenic Intergenic 6157 ENSMUSG00000080833.1 ENSMUSG00000080833 ENSMUST00000119236 Gm11976 processed_pseudogene Interval_97332 chr2 134543492 134543707 + 0 NA intron (ENSMUSG00000027261.2, intron 3 of 3) protein_coding-intron (ENSMUSG00000027261.2, intron 2 of 7) 10708 ENSMUSG00000027261.2 ENSMUSG00000027261 ENSMUST00000140794 Hao1 protein_coding Interval_142330 chr6 140666329 140666567 + 0 NA intron (ENSMUSG00000030232.18, intron 8 of 8) protein_coding-intron (ENSMUSG00000030232.18, intron 8 of 8) 29710 ENSMUSG00000030232.18 ENSMUSG00000030232 ENSMUST00000160772 Aebp2 protein_coding Interval_40441 chr12 104901091 104902992 + 0 NA Intergenic Intergenic 24648 ENSMUSG00000100975.2 ENSMUSG00000100975 ENSMUST00000185486 Gm28875 lincRNA Interval_44366 chr13 44305130 44305876 + 0 NA Intergenic Intergenic -25054 ENSMUSG00000113689.1 ENSMUSG00000113689 ENSMUST00000222409 Gm29676 lincRNA Interval_109828 chr3 148639752 148639984 + 0 NA Intergenic Intergenic -13192 ENSMUSG00000105934.1 ENSMUSG00000105934 ENSMUST00000196420 Gm43575 processed_pseudogene Interval_70063 chr17 5092544 5093862 + 0 NA intron (ENSMUSG00000069729.14, intron 2 of 19) protein_coding-intron (ENSMUSG00000069729.14, intron 2 of 18) 18907 ENSMUSG00000081783.2 ENSMUSG00000081783 ENSMUST00000122283 Gm15599 processed_pseudogene Interval_170883 chr9 111528502 111528889 + 0 NA Intergenic Intergenic 20245 ENSMUSG00000106647.1 ENSMUSG00000106647 ENSMUST00000199378 Gm42523 lincRNA Interval_6707 chr1 118902482 118902965 + 0 NA intron (ENSMUSG00000048402.14, intron 2 of 6) protein_coding-intron (ENSMUSG00000048402.14, intron 2 of 13) -51497 ENSMUSG00000098273.1 ENSMUSG00000098273 ENSMUST00000183982 Mir6346 miRNA Interval_52596 chr14 47790099 47790988 + 0 NA TTS (ENSMUSG00000115215.1) lincRNA-TTS (ENSMUSG00000115215.1) 10922 ENSMUSG00000115046.1 ENSMUSG00000115046 ENSMUST00000228127 Gm49302 lincRNA Interval_135186 chr6 37364418 37364606 + 0 NA intron (ENSMUSG00000038648.5, intron 2 of 11) protein_coding-intron (ENSMUSG00000038648.5, intron 2 of 11) -27977 ENSMUSG00000038648.5 ENSMUSG00000038648 ENSMUST00000128534 Creb3l2 protein_coding Interval_130767 chr5 130266571 130267618 + 0 NA intron (ENSMUSG00000056310.14, intron 4 of 8) protein_coding-intron (ENSMUSG00000056310.14, intron 4 of 15) 11475 ENSMUSG00000056310.14 ENSMUSG00000056310 ENSMUST00000147619 Tyw1 protein_coding Interval_29233 chr11 81856884 81857096 + 0 NA intron (ENSMUSG00000020704.13, intron 1 of 9) protein_coding-intron (ENSMUSG00000020704.13, intron 1 of 9) -3683 ENSMUSG00000020703.3 ENSMUSG00000020703 ENSMUST00000021044 5530401A14Rik protein_coding Interval_134167 chr6 22315403 22315905 + 0 NA intron (ENSMUSG00000029672.16, intron 8 of 9) protein_coding-intron (ENSMUSG00000029672.16, intron 7 of 8) 26793 ENSMUSG00000029671.15 ENSMUSG00000029671 ENSMUST00000176681 Wnt16 protein_coding Interval_21462 chr10 128747394 128748919 + 0 NA promoter-TSS (ENSMUSG00000064030.15) protein_coding-promoter-TSS (ENSMUSG00000064030.15) -372 ENSMUSG00000064030.15 ENSMUSG00000064030 ENSMUST00000218218 Pym1 protein_coding Interval_79245 chr18 27233530 27234060 + 0 NA Intergenic Intergenic -142608 ENSMUSG00000117646.1 ENSMUSG00000117646 ENSMUST00000234185 Gm49977 processed_pseudogene Interval_75862 chr17 72136629 72136975 + 0 NA intron (ENSMUSG00000055471.7, intron 4 of 4) protein_coding-intron (ENSMUSG00000055471.7, intron 4 of 28) -119456 ENSMUSG00000117046.1 ENSMUSG00000117046 ENSMUST00000233853 Gm19183 processed_pseudogene Interval_136790 chr6 60345295 60346622 + 0 NA intron (ENSMUSG00000046764.8, intron 1 of 1) processed_transcript-intron (ENSMUSG00000046764.8, intron 1 of 1) 57749 ENSMUSG00000046764.8 ENSMUSG00000046764 ENSMUST00000203367 A530053G22Rik processed_transcript Interval_87126 chr19 46326897 46330376 + 0 NA intron (ENSMUSG00000025226.11, intron 2 of 4) protein_coding-intron (ENSMUSG00000025226.11, intron 1 of 3) 449 ENSMUSG00000025226.11 ENSMUSG00000025226 ENSMUST00000177667 Fbxl15 protein_coding Interval_36137 chr12 36218249 36219368 + 0 NA promoter-TSS (ENSMUSG00000020545.14) protein_coding-promoter-TSS (ENSMUSG00000020545.14) -590 ENSMUSG00000020545.14 ENSMUSG00000020545 ENSMUST00000222145 Lrrc72 protein_coding Interval_12016 chr1 188885666 188886437 + 0 NA intron (ENSMUSG00000026609.15, intron 60 of 70) protein_coding-intron (ENSMUSG00000026609.15, intron 60 of 70) 121790 ENSMUSG00000026608.13 ENSMUSG00000026608 ENSMUST00000193273 Kctd3 protein_coding Interval_81958 chr18 66414745 66415969 + 0 NA Intergenic Intergenic -1971 ENSMUSG00000117665.1 ENSMUSG00000117665 ENSMUST00000236609 Gm20294 processed_pseudogene Interval_32191 chr11 106026053 106027930 + 0 NA intron (ENSMUSG00000001901.15, intron 11 of 12) protein_coding-intron (ENSMUSG00000001901.15, intron 11 of 12) -9909 ENSMUSG00000049354.8 ENSMUSG00000049354 ENSMUST00000106891 Dcaf7 protein_coding Interval_13803 chr10 22700092 22700325 + 0 NA intron (ENSMUSG00000037490.5, intron 4 of 4) protein_coding-intron (ENSMUSG00000037490.5, intron 4 of 4) 6177 ENSMUSG00000071359.13 ENSMUSG00000071359 ENSMUST00000138022 Tbpl1 protein_coding Interval_66708 chr16 36502276 36502469 + 0 NA intron (ENSMUSG00000051980.13, intron 4 of 6) protein_coding-intron (ENSMUSG00000051980.13, intron 4 of 6) 10278 ENSMUSG00000089118.1 ENSMUSG00000089118 ENSMUST00000158493 Gm25902 misc_RNA Interval_157446 chr8 70419094 70419367 + 0 NA intron (ENSMUSG00000003575.13, intron 1 of 13) protein_coding-intron (ENSMUSG00000003575.13, intron 1 of 13) 12055 ENSMUSG00000003575.13 ENSMUSG00000003575 ENSMUST00000153632 Crtc1 protein_coding Interval_71362 chr17 22692261 22692478 + 0 NA Intergenic Intergenic 4649 ENSMUSG00000117055.1 ENSMUSG00000117055 ENSMUST00000233199 Gm9805 processed_pseudogene Interval_20853 chr10 121515399 121516694 + 0 NA intron (ENSMUSG00000112527.1, intron 2 of 2) lincRNA-intron (ENSMUSG00000112527.1, intron 1 of 1) 9423 ENSMUSG00000112527.1 ENSMUSG00000112527 ENSMUST00000218852 Gm35696 lincRNA Interval_121873 chr5 9048373 9049545 + 0 NA intron (ENSMUSG00000114430.1, intron 2 of 2) lincRNA-intron (ENSMUSG00000114430.1, intron 2 of 2) 14179 ENSMUSG00000114430.1 ENSMUSG00000114430 ENSMUST00000224996 Gm40264 lincRNA Interval_138190 chr6 86085445 86086155 + 0 NA promoter-TSS (ENSMUSG00000030000.10) protein_coding-promoter-TSS (ENSMUSG00000030000.10) 1280 ENSMUSG00000107842.1 ENSMUSG00000107842 ENSMUST00000203624 Gm44089 antisense Interval_97686 chr2 142769882 142770138 + 0 NA intron (ENSMUSG00000038844.10, intron 12 of 26) protein_coding-intron (ENSMUSG00000038844.10, intron 12 of 25) -16886 ENSMUSG00000088134.1 ENSMUSG00000088134 ENSMUST00000157509 Gm22310 snoRNA Interval_28266 chr11 74780905 74781764 + 0 NA intron (ENSMUSG00000010554.14, intron 2 of 9) protein_coding-intron (ENSMUSG00000010554.14, intron 2 of 10) -21990 ENSMUSG00000010554.14 ENSMUSG00000010554 ENSMUST00000134571 Mettl16 protein_coding Interval_109 GL456239.1 1396 1795 + 0 NA NA NA NA NA Interval_40752 chr12 108159748 108160098 + 0 NA intron (ENSMUSG00000056770.15, intron 3 of 6) protein_coding-intron (ENSMUSG00000056770.15, intron 4 of 12) 3086 ENSMUSG00000056770.15 ENSMUSG00000056770 ENSMUST00000125916 Setd3 protein_coding Interval_115651 chr4 101625207 101625672 + 0 NA intron (ENSMUSG00000028528.17, intron 13 of 18) protein_coding-intron (ENSMUSG00000028528.17, intron 13 of 18) -22354 ENSMUSG00000035212.14 ENSMUSG00000035212 ENSMUST00000106927 Leprot protein_coding Interval_121553 chr5 3397267 3397611 + 0 NA intron (ENSMUSG00000040274.11, intron 3 of 7) protein_coding-intron (ENSMUSG00000040274.11, intron 2 of 6) -73510 ENSMUSG00000040274.11 ENSMUSG00000040274 ENSMUST00000199396 Cdk6 protein_coding Interval_134891 chr6 33267022 33267916 + 0 NA intron (ENSMUSG00000029763.17, intron 2 of 5) protein_coding-intron (ENSMUSG00000029763.17, intron 2 of 17) -19370 ENSMUSG00000082217.1 ENSMUSG00000082217 ENSMUST00000122048 Gm1401 processed_pseudogene Interval_112907 chr4 45941457 45942040 + 0 NA intron (ENSMUSG00000035539.14, intron 31 of 37) protein_coding-intron (ENSMUSG00000035539.14, intron 27 of 33) 51445 ENSMUSG00000035539.14 ENSMUSG00000035539 ENSMUST00000151024 Ccdc180 protein_coding Interval_71063 chr17 17591584 17592589 + 0 NA intron (ENSMUSG00000023845.7, intron 1 of 10) protein_coding-intron (ENSMUSG00000023845.7, intron 1 of 17) 2690 ENSMUSG00000116796.1 ENSMUSG00000116796 ENSMUST00000232626 Gm49784 TEC Interval_136167 chr6 51649343 51649747 + 0 NA Intergenic Intergenic 27913 ENSMUSG00000094528.1 ENSMUSG00000094528 ENSMUST00000175195 Gm22914 miRNA Interval_90738 chr2 32207815 32208595 + 0 NA intron (ENSMUSG00000039262.16, intron 11 of 28) protein_coding-intron (ENSMUSG00000039262.16, intron 13 of 29) -3993 ENSMUSG00000039262.16 ENSMUSG00000039262 ENSMUST00000141053 Prrc2b protein_coding Interval_57638 chr15 13036241 13036595 + 0 NA intron (ENSMUSG00000039385.5, intron 11 of 11) protein_coding-intron (ENSMUSG00000039385.5, intron 11 of 11) 55589 ENSMUSG00000089564.1 ENSMUSG00000089564 ENSMUST00000158939 Gm24664 rRNA Interval_50819 chr14 20023612 20023847 + 0 NA Intergenic Intergenic 34568 ENSMUSG00000114498.1 ENSMUSG00000114498 ENSMUST00000224881 Gm48339 processed_pseudogene Interval_13523 chr10 19104696 19105289 + 0 NA Intergenic Intergenic -3397 ENSMUSG00000111821.1 ENSMUSG00000111821 ENSMUST00000217363 Gm48545 lincRNA Interval_115807 chr4 104727734 104728034 + 0 NA exon (ENSMUSG00000028519.16, exon 12 of 15) protein_coding-exon (ENSMUSG00000028519.16, exon 12 of 15) -71324 ENSMUSG00000029656.13 ENSMUSG00000029656 ENSMUST00000123892 C8b protein_coding Interval_29362 chr11 83442654 83443170 + 0 NA TTS (ENSMUSG00000020682.17) protein_coding-TTS (ENSMUSG00000020682.17) 2781 ENSMUSG00000035085.5 ENSMUSG00000035085 ENSMUST00000188702 1700020L24Rik protein_coding Interval_50838 chr14 20147701 20148154 + 0 NA intron (ENSMUSG00000023243.9, intron 1 of 4) protein_coding-intron (ENSMUSG00000023243.9, intron 1 of 4) -2633 ENSMUSG00000023243.9 ENSMUSG00000023243 ENSMUST00000225552 Kcnk5 protein_coding Interval_65265 chr16 21076084 21076330 + 0 NA Intergenic Intergenic -3463 ENSMUSG00000086936.1 ENSMUSG00000086936 ENSMUST00000147052 Gm9697 processed_pseudogene Interval_139026 chr6 94274533 94275298 + 0 NA intron (ENSMUSG00000045095.16, intron 1 of 2) protein_coding-intron (ENSMUSG00000045095.16, intron 1 of 21) 49119 ENSMUSG00000107545.1 ENSMUSG00000107545 ENSMUST00000204466 Gm44307 processed_pseudogene Interval_131051 chr5 134765276 134765854 + 0 NA intron (ENSMUSG00000107318.1, intron 1 of 4) antisense-intron (ENSMUSG00000107318.1, intron 1 of 4) 18523 ENSMUSG00000107318.1 ENSMUSG00000107318 ENSMUST00000200700 Gm30003 antisense Interval_4566 chr1 75133717 75134017 + 0 NA promoter-TSS (ENSMUSG00000026205.8) protein_coding-promoter-TSS (ENSMUSG00000026205.8) -321 ENSMUSG00000026205.8 ENSMUSG00000026205 ENSMUST00000188080 Slc23a3 protein_coding Interval_158279 chr8 80791128 80792666 + 0 NA intron (ENSMUSG00000031714.9, intron 2 of 2) protein_coding-intron (ENSMUSG00000031714.9, intron 2 of 9) 21206 ENSMUSG00000109584.1 ENSMUSG00000109584 ENSMUST00000210546 Gm7997 processed_pseudogene Interval_157564 chr8 71454512 71455261 + 0 NA Intergenic Intergenic 8736 ENSMUSG00000007950.9 ENSMUSG00000007950 ENSMUST00000212503 Abhd8 protein_coding Interval_12398 chr1 193023655 193025645 + 0 NA intron (ENSMUSG00000016200.14, intron 2 of 8) protein_coding-intron (ENSMUSG00000016200.14, intron 2 of 8) 11125 ENSMUSG00000016200.14 ENSMUSG00000016200 ENSMUST00000191907 Syt14 protein_coding Interval_27413 chr11 67474446 67475058 + 0 NA intron (ENSMUSG00000033066.16, intron 1 of 6) protein_coding-intron (ENSMUSG00000033066.16, intron 1 of 13) 102714 ENSMUSG00000087058.1 ENSMUSG00000087058 ENSMUST00000152963 Gm12301 antisense Interval_149198 chr7 96209868 96211380 + 0 NA promoter-TSS (ENSMUSG00000048078.16) protein_coding-promoter-TSS (ENSMUSG00000048078.16) -7088 ENSMUSG00000108528.1 ENSMUSG00000108528 ENSMUST00000205708 Gm8319 processed_pseudogene Interval_98535 chr2 153059938 153060156 + 0 NA Intergenic Intergenic -5908 ENSMUSG00000027474.13 ENSMUSG00000027474 ENSMUST00000109800 Ccm2l protein_coding Interval_18776 chr10 90531685 90532451 + 0 NA intron (ENSMUSG00000058589.14, intron 14 of 25) protein_coding-intron (ENSMUSG00000058589.14, intron 14 of 17) 81158 ENSMUSG00000088221.1 ENSMUSG00000088221 ENSMUST00000157596 Gm22602 snRNA Interval_560 chr1 7349682 7349857 + 0 NA exon (ENSMUSG00000097797.6, exon 3 of 3) lincRNA-exon (ENSMUSG00000097797.6, exon 3 of 3) 34318 ENSMUSG00000102768.1 ENSMUSG00000102768 ENSMUST00000192649 Gm19002 processed_pseudogene Interval_120581 chr4 149510601 149510875 + 0 NA Intergenic Intergenic 6544 ENSMUSG00000084646.1 ENSMUSG00000084646 ENSMUST00000122697 Gm24381 snRNA Interval_86459 chr19 40720502 40720826 + 0 NA intron (ENSMUSG00000048120.16, intron 3 of 9) protein_coding-intron (ENSMUSG00000048120.16, intron 3 of 9) -28089 ENSMUSG00000108929.2 ENSMUSG00000108929 ENSMUST00000207791 Cc2d2b protein_coding Interval_83584 chr18 90209896 90210714 + 0 NA Intergenic Intergenic -18594 ENSMUSG00000089008.1 ENSMUSG00000089008 ENSMUST00000158383 Gm23859 snRNA Interval_81892 chr18 65640330 65641623 + 0 NA intron (ENSMUSG00000042439.13, intron 5 of 10) protein_coding-intron (ENSMUSG00000042439.13, intron 3 of 5) 6183 ENSMUSG00000117775.1 ENSMUSG00000117775 ENSMUST00000237947 Gm50462 sense_intronic Interval_1284 chr1 19181360 19181549 + 0 NA Intergenic Intergenic -27488 ENSMUSG00000100720.1 ENSMUSG00000100720 ENSMUST00000162030 Gm10075 processed_pseudogene Interval_174781 chrX 166531479 166532277 + 0 NA intron (ENSMUSG00000000402.2, intron 10 of 11) protein_coding-intron (ENSMUSG00000000402.2, intron 10 of 11) -28481 ENSMUSG00000051224.13 ENSMUSG00000051224 ENSMUST00000112187 Tceanc protein_coding Interval_35516 chr12 24180810 24181027 + 0 NA Intergenic Intergenic -1649 ENSMUSG00000113632.1 ENSMUSG00000113632 ENSMUST00000222650 Gm47446 unprocessed_pseudogene Interval_68839 chr16 87501169 87502798 + 0 NA exon (ENSMUSG00000093606.1, exon 2 of 3) processed_transcript-exon (ENSMUSG00000093606.1, exon 2 of 3) 5984 ENSMUSG00000093606.1 ENSMUSG00000093606 ENSMUST00000175717 B130034C11Rik processed_transcript Interval_58716 chr15 37305546 37305826 + 0 NA intron (ENSMUSG00000022286.16, intron 7 of 9) protein_coding-intron (ENSMUSG00000022286.16, intron 7 of 15) 20093 ENSMUSG00000022286.16 ENSMUSG00000022286 ENSMUST00000159221 Grhl2 protein_coding Interval_51397 chr14 27204547 27205621 + 0 NA intron (ENSMUSG00000021895.10, intron 3 of 13) protein_coding-intron (ENSMUSG00000021895.10, intron 3 of 13) -5313 ENSMUSG00000114349.1 ENSMUSG00000114349 ENSMUST00000225776 Gm7591 processed_pseudogene Interval_37597 chr12 70184303 70184656 + 0 NA TTS (ENSMUSG00000090121.10) protein_coding-TTS (ENSMUSG00000090121.10) 22869 ENSMUSG00000021069.17 ENSMUSG00000021069 ENSMUST00000166609 Pygl protein_coding Interval_29025 chr11 79961505 79963011 + 0 NA exon (ENSMUSG00000035575.11, exon 1 of 19) protein_coding-exon (ENSMUSG00000035575.11, exon 1 of 19) 109 ENSMUSG00000035575.11 ENSMUSG00000035575 ENSMUST00000146127 Utp6 protein_coding Interval_143675 chr7 14323474 14323702 + 0 NA Intergenic Intergenic 9969 ENSMUSG00000099216.1 ENSMUSG00000099216 ENSMUST00000184356 Obox8 protein_coding Interval_45376 chr13 54737193 54738624 + 0 NA exon (ENSMUSG00000069227.4, exon 3 of 3) protein_coding-exon (ENSMUSG00000069227.4, exon 3 of 3) 11966 ENSMUSG00000069227.4 ENSMUSG00000069227 ENSMUST00000099506 Gprin1 protein_coding Interval_155793 chr8 38228100 38228668 + 0 NA intron (ENSMUSG00000039539.13, intron 1 of 9) protein_coding-intron (ENSMUSG00000039539.13, intron 1 of 7) 23818 ENSMUSG00000065457.3 ENSMUSG00000065457 ENSMUST00000083523 Mir383 miRNA Interval_93769 chr2 76731030 76731353 + 0 NA exon (ENSMUSG00000051747.15, exon 162 of 191) protein_coding-exon (ENSMUSG00000051747.15, exon 162 of 191) 8415 ENSMUSG00000086354.2 ENSMUSG00000086354 ENSMUST00000156809 Gm13938 antisense Interval_68240 chr16 70447210 70447557 + 0 NA intron (ENSMUSG00000022707.16, intron 7 of 13) protein_coding-intron (ENSMUSG00000022707.16, intron 7 of 16) 133319 ENSMUSG00000022707.16 ENSMUSG00000022707 ENSMUST00000169432 Gbe1 protein_coding Interval_109789 chr3 147061266 147061982 + 0 NA Intergenic Intergenic -34560 ENSMUSG00000103334.1 ENSMUSG00000103334 ENSMUST00000193142 Gm29771 lincRNA Interval_34437 chr12 4159536 4160639 + 0 NA intron (ENSMUSG00000020654.15, intron 1 of 2) protein_coding-intron (ENSMUSG00000020654.15, intron 1 of 20) 26984 ENSMUSG00000020654.15 ENSMUSG00000020654 ENSMUST00000127110 Adcy3 protein_coding Interval_151477 chr7 122951361 122951558 + 0 NA Intergenic Intergenic 18591 ENSMUSG00000108452.1 ENSMUSG00000108452 ENSMUST00000205998 4930413G21Rik TEC Interval_135373 chr6 38689979 38690401 + 0 NA Intergenic Intergenic 26311 ENSMUSG00000079598.4 ENSMUSG00000079598 ENSMUST00000238216 Clec2l protein_coding Interval_77621 chr17 93200158 93204092 + 0 NA promoter-TSS (ENSMUSG00000024256.7) protein_coding-promoter-TSS (ENSMUSG00000024256.7) 2190 ENSMUSG00000024256.7 ENSMUSG00000024256 ENSMUST00000234204 Adcyap1 protein_coding Interval_19990 chr10 111739216 111740597 + 0 NA intron (ENSMUSG00000112430.1, intron 3 of 3) lincRNA-intron (ENSMUSG00000112430.1, intron 3 of 3) 14722 ENSMUSG00000112430.1 ENSMUSG00000112430 ENSMUST00000220039 Gm30624 lincRNA Interval_166873 chr9 63533581 63535121 + 0 NA exon (ENSMUSG00000037801.13, exon 9 of 22) protein_coding-exon (ENSMUSG00000037801.13, exon 9 of 22) 68066 ENSMUSG00000037801.13 ENSMUSG00000037801 ENSMUST00000170960 Iqch protein_coding Interval_49577 chr13 113138976 113139446 + 0 NA intron (ENSMUSG00000114333.1, intron 2 of 2) lincRNA-intron (ENSMUSG00000114333.1, intron 2 of 2) 3128 ENSMUSG00000114333.1 ENSMUSG00000114333 ENSMUST00000226043 1700084D21Rik lincRNA Interval_49293 chr13 110367447 110367696 + 0 NA Intergenic Intergenic -10372 ENSMUSG00000046006.6 ENSMUSG00000046006 ENSMUST00000224534 Gapt protein_coding Interval_80334 chr18 39371347 39371684 + 0 NA TTS (ENSMUSG00000036452.18) protein_coding-TTS (ENSMUSG00000036452.18) 17910 ENSMUSG00000085289.1 ENSMUSG00000085289 ENSMUST00000135378 Gm15337 antisense Interval_68727 chr16 85110057 85110653 + 0 NA intron (ENSMUSG00000022892.11, intron 2 of 13) protein_coding-intron (ENSMUSG00000022892.11, intron 2 of 15) 30244 ENSMUSG00000115469.1 ENSMUSG00000115469 ENSMUST00000227918 Gm49227 antisense Interval_21631 chr11 3347024 3349503 + 0 NA intron (ENSMUSG00000020451.17, intron 12 of 15) protein_coding-intron (ENSMUSG00000020451.17, intron 12 of 15) 4554 ENSMUSG00000020451.17 ENSMUSG00000020451 ENSMUST00000145223 Limk2 protein_coding Interval_72961 chr17 33822290 33825528 + 0 NA promoter-TSS (ENSMUSG00000041881.13) protein_coding-promoter-TSS (ENSMUSG00000041881.13) 585 ENSMUSG00000067288.13 ENSMUSG00000067288 ENSMUST00000174788 Rps28 protein_coding Interval_44393 chr13 44584048 44584934 + 0 NA Intergenic Intergenic -15823 ENSMUSG00000113977.1 ENSMUSG00000113977 ENSMUST00000222558 Gm34276 lincRNA Interval_122925 chr5 27404450 27405134 + 0 NA intron (ENSMUSG00000061576.15, intron 3 of 3) protein_coding-intron (ENSMUSG00000061576.15, intron 3 of 25) 96570 ENSMUSG00000048703.9 ENSMUSG00000048703 ENSMUST00000124535 Speer4b protein_coding Interval_162897 chr9 12046686 12046915 + 0 NA Intergenic Intergenic -68551 ENSMUSG00000111111.1 ENSMUSG00000111111 ENSMUST00000217391 Gm47037 TEC Interval_143803 chr7 16414459 16416833 + 0 NA exon (ENSMUSG00000059273.9, exon 1 of 2) protein_coding-exon (ENSMUSG00000059273.9, exon 1 of 2) 975 ENSMUSG00000109647.1 ENSMUSG00000109647 ENSMUST00000210059 Gm45510 antisense Interval_149500 chr7 99151291 99151925 + 0 NA Intergenic Intergenic 10015 ENSMUSG00000109468.1 ENSMUSG00000109468 ENSMUST00000207556 Gm45185 TEC Interval_27288 chr11 65378769 65379376 + 0 NA Intergenic Intergenic -13274 ENSMUSG00000085162.7 ENSMUSG00000085162 ENSMUST00000130362 Gm12295 lincRNA Interval_113717 chr4 57826327 57826651 + 0 NA intron (ENSMUSG00000038729.24, intron 1 of 1) protein_coding-intron (ENSMUSG00000038729.24, intron 2 of 2) 5439 ENSMUSG00000038729.24 ENSMUSG00000038729 ENSMUST00000102902 Pakap protein_coding Interval_92382 chr2 59394831 59396052 + 0 NA Intergenic Intergenic -1047 ENSMUSG00000083276.1 ENSMUSG00000083276 ENSMUST00000121286 Gm13551 processed_pseudogene Interval_5268 chr1 87111711 87112128 + 0 NA Intergenic Intergenic 5239 ENSMUSG00000100940.1 ENSMUSG00000100940 ENSMUST00000191416 Gm29372 processed_pseudogene Interval_60041 chr15 64173961 64174970 + 0 NA intron (ENSMUSG00000022377.16, intron 5 of 30) protein_coding-intron (ENSMUSG00000022377.16, intron 5 of 30) -50659 ENSMUSG00000022377.16 ENSMUSG00000022377 ENSMUST00000175963 Asap1 protein_coding Interval_76122 chr17 75172580 75173568 + 0 NA intron (ENSMUSG00000001870.16, intron 4 of 34) protein_coding-intron (ENSMUSG00000001870.16, intron 4 of 33) 7867 ENSMUSG00000084025.1 ENSMUSG00000084025 ENSMUST00000120159 Gm6276 processed_pseudogene Interval_55802 chr14 100300831 100301379 + 0 NA Intergenic Intergenic 14940 ENSMUSG00000110273.1 ENSMUSG00000110273 ENSMUST00000211525 Gm41231 lincRNA Interval_147705 chr7 72292325 72292688 + 0 NA intron (ENSMUSG00000032776.9, intron 1 of 1) protein_coding-intron (ENSMUSG00000032776.9, intron 1 of 22) -63146 ENSMUSG00000032776.9 ENSMUSG00000032776 ENSMUST00000206755 Mctp2 protein_coding Interval_50766 chr14 19327346 19327532 + 0 NA Intergenic Intergenic 24208 ENSMUSG00000114252.1 ENSMUSG00000114252 ENSMUST00000223777 Gm5630 processed_pseudogene Interval_44969 chr13 51048648 51049452 + 0 NA Intergenic Intergenic 34964 ENSMUSG00000084609.2 ENSMUSG00000084609 ENSMUST00000122660 Gm22199 misc_RNA Interval_29933 chr11 87852870 87854006 + 0 NA promoter-TSS (ENSMUSG00000034121.12) protein_coding-promoter-TSS (ENSMUSG00000034121.12) -227 ENSMUSG00000034121.12 ENSMUSG00000034121 ENSMUST00000135369 Mks1 protein_coding Interval_816 chr1 11708731 11709027 + 0 NA intron (ENSMUSG00000057715.13, intron 7 of 12) protein_coding-intron (ENSMUSG00000057715.13, intron 7 of 13) 4672 ENSMUSG00000103561.1 ENSMUSG00000103561 ENSMUST00000195360 Gm38069 TEC Interval_84802 chr19 16856814 16858060 + 0 NA Intergenic Intergenic 16368 ENSMUSG00000056829.4 ENSMUSG00000056829 ENSMUST00000072915 Foxb2 protein_coding Interval_144557 chr7 25868156 25868508 + 0 NA promoter-TSS (ENSMUSG00000092999.1) misc_RNA-promoter-TSS (ENSMUSG00000092999.1) -613 ENSMUSG00000092999.1 ENSMUSG00000092999 ENSMUST00000175258 Gm23921 misc_RNA Interval_18977 chr10 93529166 93530050 + 0 NA intron (ENSMUSG00000015890.2, intron 5 of 8) protein_coding-intron (ENSMUSG00000015890.2, intron 5 of 8) 10425 ENSMUSG00000015890.2 ENSMUSG00000015890 ENSMUST00000016034 Amdhd1 protein_coding Interval_20956 chr10 122760787 122761122 + 0 NA intron (ENSMUSG00000034613.12, intron 1 of 3) protein_coding-intron (ENSMUSG00000034613.12, intron 1 of 9) -2544 ENSMUSG00000112417.1 ENSMUSG00000112417 ENSMUST00000219095 A430028G04Rik TEC Interval_46024 chr13 60317081 60317314 + 0 NA Intergenic Intergenic -14252 ENSMUSG00000114460.1 ENSMUSG00000114460 ENSMUST00000225199 Gm10779 TEC Interval_55602 chr14 94907228 94907497 + 0 NA Intergenic Intergenic -22339 ENSMUSG00000089384.1 ENSMUSG00000089384 ENSMUST00000158759 Gm24680 snoRNA Interval_111961 chr4 32850846 32851197 + 0 NA intron (ENSMUSG00000040183.13, intron 1 of 3) protein_coding-intron (ENSMUSG00000040183.13, intron 3 of 16) 9662 ENSMUSG00000040183.13 ENSMUSG00000040183 ENSMUST00000149650 Ankrd6 protein_coding Interval_80538 chr18 43546565 43547282 + 0 NA promoter-TSS (ENSMUSG00000024502.10) protein_coding-promoter-TSS (ENSMUSG00000024502.10) -6312 ENSMUSG00000024502.10 ENSMUSG00000024502 ENSMUST00000237069 Jakmip2 protein_coding Interval_119066 chr4 135306710 135307658 + 0 NA promoter-TSS (ENSMUSG00000085002.1) antisense-promoter-TSS (ENSMUSG00000085002.1) -165 ENSMUSG00000085002.1 ENSMUSG00000085002 ENSMUST00000145711 Gm12984 antisense Interval_53681 chr14 60838518 60839011 + 0 NA intron (ENSMUSG00000021993.10, intron 14 of 15) protein_coding-intron (ENSMUSG00000021993.10, intron 14 of 18) 54182 ENSMUSG00000021993.10 ENSMUSG00000021993 ENSMUST00000223709 Mipep protein_coding Interval_89402 chr2 20485304 20485591 + 0 NA intron (ENSMUSG00000036617.17, intron 2 of 3) protein_coding-intron (ENSMUSG00000036617.17, intron 3 of 7) -24600 ENSMUSG00000036617.17 ENSMUSG00000036617 ENSMUST00000156587 Etl4 protein_coding Interval_69597 chr16 94534797 94535013 + 0 NA Intergenic Intergenic -30518 ENSMUSG00000022898.13 ENSMUSG00000022898 ENSMUST00000142988 Vps26c protein_coding Interval_94141 chr2 84649712 84651191 + 0 NA promoter-TSS (ENSMUSG00000034101.14) protein_coding-promoter-TSS (ENSMUSG00000034101.14) -8628 ENSMUSG00000086598.9 ENSMUSG00000086598 ENSMUST00000133437 Btbd18 protein_coding Interval_51289 chr14 25768012 25769572 + 0 NA exon (ENSMUSG00000055538.7, exon 1 of 4) protein_coding-exon (ENSMUSG00000055538.7, exon 1 of 4) 41089 ENSMUSG00000099057.1 ENSMUSG00000099057 ENSMUST00000184296 Gm27185 processed_pseudogene Interval_174639 chrX 161298395 161298581 + 0 NA intron (ENSMUSG00000108981.1, intron 1 of 8) protein_coding-intron (ENSMUSG00000108981.1, intron 2 of 3) 121 ENSMUSG00000108981.1 ENSMUSG00000108981 ENSMUST00000207320 Gm15262 protein_coding Interval_156445 chr8 48239950 48240134 + 0 NA intron (ENSMUSG00000031561.16, intron 24 of 26) protein_coding-intron (ENSMUSG00000031561.16, intron 26 of 28) 30943 ENSMUSG00000110480.1 ENSMUSG00000110480 ENSMUST00000212653 Gm32842 processed_pseudogene Interval_158766 chr8 86146449 86146645 + 0 NA Intergenic Intergenic -87307 ENSMUSG00000088192.1 ENSMUSG00000088192 ENSMUST00000157567 Gm23904 snoRNA Interval_108191 chr3 122389728 122390616 + 0 NA intron (ENSMUSG00000104554.1, intron 1 of 1) protein_coding-intron (ENSMUSG00000028121.8, intron 6 of 6) 1639 ENSMUSG00000104554.1 ENSMUSG00000104554 ENSMUST00000198222 Gm4610 antisense Interval_59131 chr15 44456670 44458207 + 0 NA promoter-TSS (ENSMUSG00000038725.13) protein_coding-promoter-TSS (ENSMUSG00000038725.13) -56 ENSMUSG00000038725.13 ENSMUSG00000038725 ENSMUST00000209939 Pkhd1l1 protein_coding Interval_93841 chr2 77369278 77369650 + 0 NA Intergenic Intergenic 34105 ENSMUSG00000082006.1 ENSMUSG00000082006 ENSMUST00000122325 Gm13649 processed_pseudogene Interval_11080 chr1 179213265 179213814 + 0 NA intron (ENSMUSG00000055067.15, intron 1 of 8) protein_coding-intron (ENSMUSG00000055067.15, intron 1 of 8) -295925 ENSMUSG00000089713.1 ENSMUSG00000089713 ENSMUST00000162545 Gm16564 antisense Interval_52198 chr14 40183693 40184478 + 0 NA Intergenic Intergenic 31156 ENSMUSG00000077019.1 ENSMUSG00000077019 ENSMUST00000103831 Gm22191 miRNA Interval_60172 chr15 66961872 66963116 + 0 NA intron (ENSMUSG00000005125.13, intron 1 of 7) protein_coding-intron (ENSMUSG00000005125.13, intron 1 of 15) -6829 ENSMUSG00000091412.1 ENSMUSG00000091412 ENSMUST00000171591 Gm2895 bidirectional_promoter_lncRNA Interval_17328 chr10 75908135 75908404 + 0 NA intron (ENSMUSG00000000902.13, intron 2 of 4) protein_coding-intron (ENSMUSG00000000902.13, intron 5 of 8) 6895 ENSMUSG00000000902.13 ENSMUSG00000000902 ENSMUST00000146555 Smarcb1 protein_coding Interval_20551 chr10 118854078 118854320 + 0 NA Intergenic Intergenic -6627 ENSMUSG00000104443.1 ENSMUSG00000104443 ENSMUST00000191892 4932442E05Rik TEC Interval_127359 chr5 103383768 103384087 + 0 NA Intergenic Intergenic -27229 ENSMUSG00000104684.1 ENSMUSG00000104684 ENSMUST00000200007 5430427N15Rik lincRNA Interval_170911 chr9 111974684 111974905 + 0 NA Intergenic Intergenic -56128 ENSMUSG00000111054.1 ENSMUSG00000111054 ENSMUST00000215688 4930545L08Rik lincRNA Interval_155357 chr8 32284559 32284830 + 0 NA intron (ENSMUSG00000062991.9, intron 1 of 12) protein_coding-intron (ENSMUSG00000062991.9, intron 1 of 8) 98565 ENSMUSG00000089370.1 ENSMUSG00000089370 ENSMUST00000158745 Gm22140 snRNA Interval_30275 chr11 92743594 92743770 + 0 NA Intergenic Intergenic 27291 ENSMUSG00000081363.2 ENSMUSG00000081363 ENSMUST00000118237 Gm11500 processed_pseudogene Interval_41937 chr13 4813748 4814364 + 0 NA intron (ENSMUSG00000053499.4, intron 1 of 2) lincRNA-intron (ENSMUSG00000053499.4, intron 1 of 2) 42405 ENSMUSG00000053499.4 ENSMUSG00000053499 ENSMUST00000065956 Gm5444 lincRNA Interval_36028 chr12 33427266 33427989 + 0 NA Intergenic Intergenic -2008 ENSMUSG00000020561.8 ENSMUSG00000020561 ENSMUST00000219758 Twistnb protein_coding Interval_144459 chr7 25281665 25283181 + 0 NA promoter-TSS (ENSMUSG00000005442.13) protein_coding-promoter-TSS (ENSMUSG00000005442.13) -8785 ENSMUSG00000005442.13 ENSMUSG00000005442 ENSMUST00000163901 Cic protein_coding Interval_119536 chr4 138222306 138222921 + 0 NA TTS (ENSMUSG00000028759.13) protein_coding-TTS (ENSMUSG00000028759.13) 5482 ENSMUSG00000028759.13 ENSMUSG00000028759 ENSMUST00000155344 Hp1bp3 protein_coding Interval_30257 chr11 92181353 92181567 + 0 NA Intergenic Intergenic -157047 ENSMUSG00000093113.1 ENSMUSG00000093113 ENSMUST00000175372 Gm22702 miRNA Interval_10258 chr1 167636996 167637297 + 0 NA intron (ENSMUSG00000015843.10, intron 10 of 10) protein_coding-intron (ENSMUSG00000015843.10, intron 9 of 9) 38686 ENSMUSG00000015843.10 ENSMUSG00000015843 ENSMUST00000111380 Rxrg protein_coding Interval_78900 chr18 21327982 21328266 + 0 NA exon (ENSMUSG00000117357.1, exon 3 of 3) transcribed_processed_pseudogene-exon (ENSMUSG00000117357.1, exon 3 of 3) 4555 ENSMUSG00000117590.1 ENSMUSG00000117590 ENSMUST00000234999 Gm50052 processed_pseudogene Interval_40258 chr12 102814497 102815233 + 0 NA intron (ENSMUSG00000041702.7, intron 4 of 11) protein_coding-intron (ENSMUSG00000041702.7, intron 3 of 10) -23243 ENSMUSG00000113907.1 ENSMUSG00000113907 ENSMUST00000220987 Gm47167 antisense Interval_27025 chr11 62435459 62435671 + 0 NA intron (ENSMUSG00000018501.17, intron 1 of 14) protein_coding-intron (ENSMUSG00000018501.17, intron 2 of 45) -23043 ENSMUSG00000014245.8 ENSMUSG00000014245 ENSMUST00000147918 Pigl protein_coding Interval_10911 chr1 176885127 176885527 + 0 NA intron (ENSMUSG00000026504.17, intron 13 of 16) protein_coding-intron (ENSMUSG00000026504.17, intron 12 of 17) 3756 ENSMUSG00000102475.1 ENSMUSG00000102475 ENSMUST00000192665 Gm37246 processed_pseudogene Interval_104943 chr3 79194093 79194778 + 0 NA intron (ENSMUSG00000062232.14, intron 4 of 29) protein_coding-intron (ENSMUSG00000062232.14, intron 4 of 29) -1939 ENSMUSG00000064693.1 ENSMUSG00000064693 ENSMUST00000082759 Gm24150 snRNA Interval_133505 chr6 5991960 5992342 + 0 NA intron (ENSMUSG00000029757.16, intron 14 of 16) protein_coding-intron (ENSMUSG00000029757.16, intron 13 of 15) -14758 ENSMUSG00000085416.1 ENSMUSG00000085416 ENSMUST00000130004 1700019G24Rik antisense Interval_146412 chr7 45755277 45756143 + 0 NA intron (ENSMUSG00000003271.17, intron 1 of 6) protein_coding-intron (ENSMUSG00000003271.17, intron 1 of 6) 13661 ENSMUSG00000109602.1 ENSMUSG00000109602 ENSMUST00000211176 Gm31597 antisense Interval_6062 chr1 95518060 95518259 + 0 NA Intergenic Intergenic 19538 ENSMUSG00000081051.4 ENSMUSG00000081051 ENSMUST00000117288 Gm15427 processed_pseudogene Interval_139686 chr6 107036536 107037177 + 0 NA Intergenic Intergenic 35404 ENSMUSG00000094963.1 ENSMUSG00000094963 ENSMUST00000180326 Gm22418 snRNA Interval_139743 chr6 108289034 108289331 + 0 NA intron (ENSMUSG00000030102.11, intron 1 of 22) protein_coding-intron (ENSMUSG00000030102.11, intron 4 of 61) -98252 ENSMUSG00000030102.11 ENSMUSG00000030102 ENSMUST00000205005 Itpr1 protein_coding Interval_60536 chr15 74702016 74702619 + 0 NA TTS (ENSMUSG00000046380.3) protein_coding-TTS (ENSMUSG00000046380.3) -6844 ENSMUSG00000044276.2 ENSMUSG00000044276 ENSMUST00000056711 4933427E11Rik antisense Interval_20940 chr10 122542697 122542989 + 0 NA intron (ENSMUSG00000112873.1, intron 1 of 2) antisense-intron (ENSMUSG00000112873.1, intron 1 of 2) 3655 ENSMUSG00000112873.1 ENSMUSG00000112873 ENSMUST00000218285 Gm48877 antisense Interval_49764 chr13 114795167 114795397 + 0 NA Intergenic Intergenic -23012 ENSMUSG00000015536.14 ENSMUSG00000015536 ENSMUST00000164871 Mocs2 protein_coding Interval_116442 chr4 112159500 112161234 + 0 NA intron (ENSMUSG00000055960.12, intron 10 of 10) protein_coding-intron (ENSMUSG00000055960.12, intron 10 of 10) -14135 ENSMUSG00000082638.1 ENSMUSG00000082638 ENSMUST00000121737 Gm12815 processed_pseudogene Interval_86256 chr19 38198984 38199556 + 0 NA intron (ENSMUSG00000054237.6, intron 11 of 13) protein_coding-intron (ENSMUSG00000054237.6, intron 11 of 13) 24868 ENSMUSG00000054237.6 ENSMUSG00000054237 ENSMUST00000238154 Fra10ac1 protein_coding Interval_3316 chr1 56796656 56797597 + 0 NA exon (ENSMUSG00000038331.15, exon 10 of 10) protein_coding-exon (ENSMUSG00000038331.15, exon 10 of 10) -159691 ENSMUSG00000045336.5 ENSMUSG00000045336 ENSMUST00000062085 Hsfy2 protein_coding Interval_19090 chr10 94432460 94432967 + 0 NA intron (ENSMUSG00000020023.18, intron 2 of 2) protein_coding-intron (ENSMUSG00000020023.18, intron 2 of 2) 23822 ENSMUSG00000085409.1 ENSMUSG00000085409 ENSMUST00000155180 Gm16155 sense_intronic Interval_91177 chr2 35679620 35680602 + 0 NA intron (ENSMUSG00000026883.17, intron 1 of 3) protein_coding-intron (ENSMUSG00000026883.17, intron 3 of 15) -30216 ENSMUSG00000026883.17 ENSMUSG00000026883 ENSMUST00000156669 Dab2ip protein_coding Interval_147884 chr7 75100208 75100479 + 0 NA Intergenic Intergenic 47383 ENSMUSG00000053025.13 ENSMUSG00000053025 ENSMUST00000206236 Sv2b protein_coding Interval_75897 chr17 72857956 72858592 + 0 NA Intergenic Intergenic 20738 ENSMUSG00000039770.6 ENSMUSG00000039770 ENSMUST00000233662 Ypel5 protein_coding Interval_129997 chr5 123614129 123615223 + 0 NA exon (ENSMUSG00000049550.17, exon 3 of 12) protein_coding-exon (ENSMUSG00000049550.17, exon 3 of 12) -13525 ENSMUSG00000084552.1 ENSMUSG00000084552 ENSMUST00000122603 Gm24840 snRNA Interval_72252 chr17 28818706 28818973 + 0 NA intron (ENSMUSG00000063952.16, intron 6 of 10) protein_coding-intron (ENSMUSG00000063952.16, intron 7 of 12) 3918 ENSMUSG00000117301.1 ENSMUSG00000117301 ENSMUST00000233498 Gm35883 antisense Interval_154425 chr8 16171351 16171572 + 0 NA intron (ENSMUSG00000060924.15, intron 23 of 33) protein_coding-intron (ENSMUSG00000060924.15, intron 23 of 69) -2623 ENSMUSG00000093142.1 ENSMUSG00000093142 ENSMUST00000175401 Mir3106 miRNA Interval_77432 chr17 88651992 88652242 + 0 NA intron (ENSMUSG00000033855.15, intron 4 of 4) protein_coding-intron (ENSMUSG00000033855.15, intron 4 of 4) 12648 ENSMUSG00000117567.1 ENSMUSG00000117567 ENSMUST00000234688 Gm50056 lincRNA Interval_46421 chr13 65112196 65113474 + 0 NA exon (ENSMUSG00000038212.16, exon 1 of 13) protein_coding-exon (ENSMUSG00000038212.16, exon 1 of 13) 123 ENSMUSG00000038212.16 ENSMUSG00000038212 ENSMUST00000220824 Mfsd14b protein_coding Interval_3009 chr1 52126970 52127903 + 0 NA intron (ENSMUSG00000026104.14, intron 5 of 22) protein_coding-intron (ENSMUSG00000026104.14, intron 5 of 24) 7894 ENSMUSG00000099569.1 ENSMUSG00000099569 ENSMUST00000185261 Gm18301 unprocessed_pseudogene Interval_102709 chr3 30507288 30510208 + 0 NA intron (ENSMUSG00000027684.16, intron 2 of 8) protein_coding-intron (ENSMUSG00000027684.16, intron 1 of 11) -4935 ENSMUSG00000103738.1 ENSMUSG00000103738 ENSMUST00000195290 Gm37652 TEC Interval_170008 chr9 103595323 103597379 + 0 NA intron (ENSMUSG00000042757.16, intron 3 of 3) protein_coding-intron (ENSMUSG00000042757.16, intron 2 of 4) 3813 ENSMUSG00000102441.1 ENSMUSG00000102441 ENSMUST00000195052 Gm38032 TEC Interval_87356 chr19 47918362 47920078 + 0 NA promoter-TSS (ENSMUSG00000044948.17) protein_coding-promoter-TSS (ENSMUSG00000044948.17) 30 ENSMUSG00000117975.1 ENSMUSG00000117975 ENSMUST00000237029 Itprip protein_coding Interval_45482 chr13 55388177 55388390 + 0 NA Intergenic Intergenic 11301 ENSMUSG00000052087.14 ENSMUSG00000052087 ENSMUST00000135851 Rgs14 protein_coding Interval_26294 chr11 55868855 55869135 + 0 NA intron (ENSMUSG00000086020.1, intron 1 of 4) antisense-intron (ENSMUSG00000086020.1, intron 1 of 4) 96907 ENSMUSG00000086020.1 ENSMUSG00000086020 ENSMUST00000134285 Gm12239 antisense Interval_132103 chr5 142775098 142775435 + 0 NA exon (ENSMUSG00000039477.16, exon 8 of 16) protein_coding-exon (ENSMUSG00000039477.16, exon 8 of 16) -9244 ENSMUSG00000039477.16 ENSMUSG00000039477 ENSMUST00000198181 Tnrc18 protein_coding Interval_129265 chr5 118532392 118532559 + 0 NA Intergenic Intergenic 30626 ENSMUSG00000106912.1 ENSMUSG00000106912 ENSMUST00000201036 Gm43785 TEC Interval_5246 chr1 86749631 86750772 + 0 NA intron (ENSMUSG00000053333.15, intron 3 of 20) protein_coding-intron (ENSMUSG00000053333.15, intron 3 of 20) 15164 ENSMUSG00000100225.1 ENSMUSG00000100225 ENSMUST00000190273 Gm29097 processed_pseudogene Interval_8443 chr1 139436095 139436315 + 0 NA intron (ENSMUSG00000033964.12, intron 5 of 8) protein_coding-intron (ENSMUSG00000033964.12, intron 5 of 10) 13917 ENSMUSG00000033964.12 ENSMUSG00000033964 ENSMUST00000199011 Zbtb41 protein_coding Interval_20505 chr10 118043354 118046475 + 0 NA Intergenic Intergenic 39976 ENSMUSG00000102896.1 ENSMUSG00000102896 ENSMUST00000193027 Gm37852 TEC Interval_6276 chr1 105119408 105119648 + 0 NA intron (ENSMUSG00000099669.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000099669.1, intron 1 of 2) 3074 ENSMUSG00000099669.1 ENSMUSG00000099669 ENSMUST00000187882 Gm29012 lincRNA Interval_171578 chr9 119320601 119323532 + 0 NA exon (ENSMUSG00000036737.12, exon 1 of 18) protein_coding-exon (ENSMUSG00000036737.12, exon 1 of 18) -15309 ENSMUSG00000088713.1 ENSMUSG00000088713 ENSMUST00000158088 Gm22729 snoRNA Interval_82691 chr18 75968004 75968268 + 0 NA intron (ENSMUSG00000044646.15, intron 2 of 5) protein_coding-intron (ENSMUSG00000044646.15, intron 2 of 4) 47541 ENSMUSG00000118311.1 ENSMUSG00000118311 ENSMUST00000238127 1700003O11Rik antisense Interval_78400 chr18 12502605 12504242 + 0 NA promoter-TSS (ENSMUSG00000024421.16) protein_coding-promoter-TSS (ENSMUSG00000024421.16) -776 ENSMUSG00000024421.16 ENSMUSG00000024421 ENSMUST00000188815 Lama3 protein_coding Interval_22059 chr11 6049300 6049614 + 0 NA intron (ENSMUSG00000057897.14, intron 1 of 5) protein_coding-intron (ENSMUSG00000057897.14, intron 1 of 18) -65319 ENSMUSG00000057897.14 ENSMUSG00000057897 ENSMUST00000129098 Camk2b protein_coding Interval_65060 chr16 18769413 18769824 + 0 NA Intergenic Intergenic -7229 ENSMUSG00000041378.2 ENSMUSG00000041378 ENSMUST00000043577 Cldn5 protein_coding Interval_21461 chr10 128742627 128744265 + 0 NA intron (ENSMUSG00000025357.8, intron 2 of 23) protein_coding-intron (ENSMUSG00000025357.8, intron 1 of 23) 1409 ENSMUSG00000025357.8 ENSMUSG00000025357 ENSMUST00000217957 Dgka protein_coding Interval_137888 chr6 83151077 83151902 + 0 NA exon (ENSMUSG00000030032.12, exon 10 of 10) protein_coding-exon (ENSMUSG00000030032.12, exon 10 of 10) 179 ENSMUSG00000034930.16 ENSMUSG00000034930 ENSMUST00000213056 Rtkn protein_coding Interval_159081 chr8 89823403 89825362 + 0 NA Intergenic Intergenic -157078 ENSMUSG00000088883.1 ENSMUSG00000088883 ENSMUST00000158258 Gm24212 snoRNA Interval_43758 chr13 36116831 36118102 + 0 NA promoter-TSS (ENSMUSG00000021420.13) protein_coding-promoter-TSS (ENSMUSG00000021420.13) 60 ENSMUSG00000046573.7 ENSMUSG00000046573 ENSMUST00000053265 Lyrm4 protein_coding Interval_86955 chr19 45174934 45175175 + 0 NA Intergenic Intergenic -15750 ENSMUSG00000092346.1 ENSMUSG00000092346 ENSMUST00000173437 Tlx1os antisense Interval_121668 chr5 4911750 4912715 + 0 NA intron (ENSMUSG00000028926.15, intron 11 of 13) protein_coding-intron (ENSMUSG00000028926.15, intron 12 of 14) -41966 ENSMUSG00000106472.1 ENSMUSG00000106472 ENSMUST00000197445 Gm43111 sense_intronic Interval_144520 chr7 25655492 25656169 + 0 NA intron (ENSMUSG00000060376.7, intron 1 of 8) protein_coding-intron (ENSMUSG00000060376.7, intron 1 of 8) -3361 ENSMUSG00000061286.7 ENSMUSG00000061286 ENSMUST00000205614 Exosc5 protein_coding Interval_106644 chr3 98042932 98043537 + 0 NA intron (ENSMUSG00000027878.11, intron 1 of 7) protein_coding-intron (ENSMUSG00000027878.11, intron 1 of 33) 12547 ENSMUSG00000105728.1 ENSMUSG00000105728 ENSMUST00000199630 Gm42819 TEC Interval_67023 chr16 40814348 40814609 + 0 NA intron (ENSMUSG00000061080.11, intron 2 of 8) protein_coding-intron (ENSMUSG00000061080.11, intron 2 of 8) 252098 ENSMUSG00000099168.1 ENSMUSG00000099168 ENSMUST00000183933 Gm27717 misc_RNA Interval_101653 chr3 8565572 8567144 + 0 NA Intergenic Intergenic 50146 ENSMUSG00000098047.1 ENSMUSG00000098047 ENSMUST00000182857 Gm18822 processed_pseudogene Interval_56416 chr14 118621401 118621883 + 0 NA intron (ENSMUSG00000032849.14, intron 7 of 29) protein_coding-intron (ENSMUSG00000032849.14, intron 8 of 30) -29170 ENSMUSG00000098433.1 ENSMUSG00000098433 ENSMUST00000184391 Mir6391 miRNA Interval_169318 chr9 96363627 96365083 + 0 NA promoter-TSS (ENSMUSG00000032412.8) protein_coding-promoter-TSS (ENSMUSG00000032412.8) -20774 ENSMUSG00000032412.8 ENSMUSG00000032412 ENSMUST00000187341 Atp1b3 protein_coding Interval_116123 chr4 107964814 107965598 + 0 NA Intergenic Intergenic -3128 ENSMUSG00000008932.10 ENSMUSG00000008932 ENSMUST00000124190 Slc1a7 protein_coding Interval_8751 chr1 150441686 150442162 + 0 NA intron (ENSMUSG00000006005.18, intron 3 of 10) protein_coding-intron (ENSMUSG00000006005.18, intron 42 of 50) 2992 ENSMUSG00000006005.18 ENSMUSG00000006005 ENSMUST00000130779 Tpr protein_coding Interval_19462 chr10 99615582 99616059 + 0 NA intron (ENSMUSG00000111962.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000111962.1, intron 1 of 2) 6649 ENSMUSG00000111962.1 ENSMUSG00000111962 ENSMUST00000218263 Gm20110 lincRNA Interval_16244 chr10 61669601 61671040 + 0 NA intron (ENSMUSG00000020089.8, intron 8 of 10) protein_coding-intron (ENSMUSG00000020089.8, intron 8 of 10) 6631 ENSMUSG00000020089.8 ENSMUSG00000020089 ENSMUST00000162028 Ppa1 protein_coding Interval_23258 chr11 20955181 20956164 + 0 NA Intergenic Intergenic -17971 ENSMUSG00000096061.1 ENSMUSG00000096061 ENSMUST00000178821 Gm23681 miRNA Interval_137368 chr6 71740847 71741224 + 0 NA intron (ENSMUSG00000052852.8, intron 1 of 8) protein_coding-intron (ENSMUSG00000052852.8, intron 1 of 6) 33165 ENSMUSG00000052852.8 ENSMUSG00000052852 ENSMUST00000212631 Reep1 protein_coding Interval_105932 chr3 90150856 90151692 + 0 NA intron (ENSMUSG00000027939.11, intron 14 of 39) protein_coding-intron (ENSMUSG00000027939.11, intron 14 of 39) 24507 ENSMUSG00000104649.1 ENSMUSG00000104649 ENSMUST00000198020 Gm43712 unprocessed_pseudogene Interval_120060 chr4 141585311 141585903 + 0 NA intron (ENSMUSG00000006219.12, intron 5 of 8) protein_coding-intron (ENSMUSG00000006219.12, intron 5 of 8) 20489 ENSMUSG00000006219.12 ENSMUSG00000006219 ENSMUST00000133874 Fblim1 protein_coding Interval_57304 chr15 8629092 8629926 + 0 NA Intergenic Intergenic 25564 ENSMUSG00000103047.1 ENSMUSG00000103047 ENSMUST00000195237 Gm37310 TEC Interval_125954 chr5 76189592 76189867 + 0 NA intron (ENSMUSG00000029234.13, intron 1 of 5) protein_coding-intron (ENSMUSG00000029234.13, intron 1 of 5) -6896 ENSMUSG00000083152.1 ENSMUSG00000083152 ENSMUST00000119356 Apc-ps1 transcribed_processed_pseudogene Interval_52234 chr14 40915258 40915944 + 0 NA intron (ENSMUSG00000037824.6, intron 3 of 3) protein_coding-intron (ENSMUSG00000037824.6, intron 4 of 8) 18715 ENSMUSG00000037824.6 ENSMUSG00000037824 ENSMUST00000224349 Tspan14 protein_coding Interval_111029 chr4 11312330 11312814 + 0 NA intron (ENSMUSG00000045205.16, intron 3 of 6) protein_coding-intron (ENSMUSG00000045205.16, intron 2 of 18) 9528 ENSMUSG00000045205.16 ENSMUSG00000045205 ENSMUST00000148524 Dpy19l4 protein_coding Interval_139622 chr6 103585701 103585974 + 0 NA intron (ENSMUSG00000030077.11, intron 2 of 26) protein_coding-intron (ENSMUSG00000030077.11, intron 2 of 26) -2867 ENSMUSG00000088265.1 ENSMUSG00000088265 ENSMUST00000157640 Gm24784 snRNA Interval_24201 chr11 31359280 31361109 + 0 NA exon (ENSMUSG00000020303.2, exon 4 of 4) protein_coding-exon (ENSMUSG00000020303.2, exon 4 of 4) 9853 ENSMUSG00000020303.2 ENSMUSG00000020303 ENSMUST00000134199 Stc2 protein_coding Interval_120833 chr4 150908657 150910472 + 0 NA promoter-TSS (ENSMUSG00000028964.14) protein_coding-promoter-TSS (ENSMUSG00000028964.14) 264 ENSMUSG00000028964.14 ENSMUSG00000028964 ENSMUST00000146184 Park7 protein_coding Interval_148268 chr7 80191515 80193136 + 0 NA intron (ENSMUSG00000030539.13, intron 1 of 12) protein_coding-intron (ENSMUSG00000030539.13, intron 1 of 14) -6116 ENSMUSG00000030539.13 ENSMUSG00000030539 ENSMUST00000123023 Sema4b protein_coding Interval_164674 chr9 40482529 40482782 + 0 NA intron (ENSMUSG00000040111.17, intron 1 of 20) protein_coding-intron (ENSMUSG00000040111.17, intron 1 of 20) -5065 ENSMUSG00000111515.1 ENSMUSG00000111515 ENSMUST00000215697 Gm5055 processed_pseudogene Interval_28981 chr11 79703655 79705067 + 0 NA promoter-TSS (ENSMUSG00000084969.1) lincRNA-promoter-TSS (ENSMUSG00000084969.1) -269 ENSMUSG00000084969.1 ENSMUSG00000084969 ENSMUST00000137738 Gm11205 lincRNA Interval_160251 chr8 107466548 107466852 + 0 NA intron (ENSMUSG00000031930.11, intron 4 of 22) protein_coding-intron (ENSMUSG00000031930.11, intron 4 of 23) -22008 ENSMUSG00000110501.1 ENSMUSG00000110501 ENSMUST00000211879 Gm45900 processed_pseudogene Interval_42106 chr13 8841388 8842641 + 0 NA TTS (ENSMUSG00000021147.17) protein_coding-TTS (ENSMUSG00000021147.17) 4691 ENSMUSG00000021147.17 ENSMUSG00000021147 ENSMUST00000177404 Wdr37 protein_coding Interval_88654 chr2 8810054 8810337 + 0 NA Intergenic Intergenic 176258 ENSMUSG00000084374.1 ENSMUSG00000084374 ENSMUST00000117255 Gm13255 processed_pseudogene Interval_88115 chr19 59309294 59309617 + 0 NA intron (ENSMUSG00000074746.3, intron 3 of 4) protein_coding-intron (ENSMUSG00000074746.3, intron 3 of 4) -12916 ENSMUSG00000067038.6 ENSMUSG00000067038 ENSMUST00000086764 Rps12-ps3 processed_pseudogene Interval_108159 chr3 122055756 122057103 + 0 NA intron (ENSMUSG00000028125.14, intron 5 of 12) protein_coding-intron (ENSMUSG00000028125.14, intron 4 of 49) 32599 ENSMUSG00000104869.1 ENSMUSG00000104869 ENSMUST00000197868 Gm42544 TEC Interval_21440 chr10 128621187 128623866 + 0 NA Intergenic Intergenic 3998 ENSMUSG00000025362.6 ENSMUSG00000025362 ENSMUST00000219773 Rps26 protein_coding Interval_5299 chr1 87331934 87332886 + 0 NA intron (ENSMUSG00000048000.15, intron 1 of 3) protein_coding-intron (ENSMUSG00000048000.15, intron 1 of 28) 5364 ENSMUSG00000048000.15 ENSMUSG00000048000 ENSMUST00000174482 Gigyf2 protein_coding Interval_82521 chr18 74892681 74893670 + 0 NA Intergenic Intergenic 13259 ENSMUSG00000088144.1 ENSMUSG00000088144 ENSMUST00000157519 Gm24559 snoRNA Interval_113555 chr4 56582447 56582952 + 0 NA Intergenic Intergenic 96336 ENSMUSG00000077663.1 ENSMUSG00000077663 ENSMUST00000104475 Gm26144 snoRNA Interval_70283 chr17 8175372 8175759 + 0 NA exon (ENSMUSG00000069135.11, exon 7 of 13) protein_coding-exon (ENSMUSG00000069135.11, exon 7 of 13) 10045 ENSMUSG00000069135.11 ENSMUSG00000069135 ENSMUST00000161898 Fgfr1op protein_coding Interval_139105 chr6 95204803 95205109 + 0 NA Intergenic Intergenic 35622 ENSMUSG00000107934.1 ENSMUSG00000107934 ENSMUST00000204307 Gm17822 processed_pseudogene Interval_67466 chr16 49067803 49068007 + 0 NA intron (ENSMUSG00000092009.1, intron 3 of 40) protein_coding-intron (ENSMUSG00000092009.1, intron 3 of 40) 10419 ENSMUSG00000092009.1 ENSMUSG00000092009 ENSMUST00000168680 Myh15 protein_coding Interval_146399 chr7 45684271 45684515 + 0 NA promoter-TSS (ENSMUSG00000070564.15) protein_coding-promoter-TSS (ENSMUSG00000070564.15) -36 ENSMUSG00000070564.15 ENSMUSG00000070564 ENSMUST00000183120 Ntn5 protein_coding Interval_71146 chr17 20096232 20096683 + 0 NA Intergenic Intergenic 16492 ENSMUSG00000093401.2 ENSMUSG00000093401 ENSMUST00000176711 Vmn2r-ps126 unprocessed_pseudogene Interval_28514 chr11 76436712 76437692 + 0 NA promoter-TSS (ENSMUSG00000017631.19) protein_coding-promoter-TSS (ENSMUSG00000017631.19) 29997 ENSMUSG00000020843.15 ENSMUSG00000020843 ENSMUST00000164102 Timm22 protein_coding Interval_139523 chr6 100762042 100762310 + 0 NA intron (ENSMUSG00000030074.9, intron 3 of 6) protein_coding-intron (ENSMUSG00000030074.9, intron 3 of 6) -29653 ENSMUSG00000107989.1 ENSMUSG00000107989 ENSMUST00000203856 Gm19692 TEC Interval_131263 chr5 136061418 136063108 + 0 NA intron (ENSMUSG00000006143.12, intron 5 of 5) protein_coding-intron (ENSMUSG00000006143.12, intron 5 of 5) 4996 ENSMUSG00000006143.12 ENSMUSG00000006143 ENSMUST00000122979 Upk3bl protein_coding Interval_80299 chr18 38967306 38968349 + 0 NA intron (ENSMUSG00000117994.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000117994.1, intron 4 of 4) 26365 ENSMUSG00000086991.1 ENSMUSG00000086991 ENSMUST00000131421 Gm15334 antisense Interval_35598 chr12 25169409 25170260 + 0 NA intron (ENSMUSG00000113587.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000113587.1, intron 1 of 2) -11934 ENSMUSG00000114033.1 ENSMUSG00000114033 ENSMUST00000222804 Gm47705 lincRNA Interval_23458 chr11 22747325 22748133 + 0 NA Intergenic Intergenic 12296 ENSMUSG00000084081.3 ENSMUSG00000084081 ENSMUST00000117244 Gm12057 processed_pseudogene Interval_163488 chr9 21682989 21683998 + 0 NA intron (ENSMUSG00000032187.16, intron 28 of 33) protein_coding-intron (ENSMUSG00000032187.16, intron 28 of 33) 5580 ENSMUSG00000099192.1 ENSMUSG00000099192 ENSMUST00000184017 Gm27373 misc_RNA Interval_174731 chrX 164268985 164270261 + 0 NA promoter-TSS (ENSMUSG00000031379.13) protein_coding-promoter-TSS (ENSMUSG00000031379.13) 252 ENSMUSG00000031379.13 ENSMUSG00000031379 ENSMUST00000123343 Pir protein_coding Interval_133773 chr6 11993568 11994116 + 0 NA exon (ENSMUSG00000029629.17, exon 1 of 1) protein_coding-exon (ENSMUSG00000029629.17, exon 1 of 1) -50537 ENSMUSG00000029629.17 ENSMUSG00000029629 ENSMUST00000214543 Phf14 protein_coding Interval_157477 chr8 70607996 70612134 + 0 NA promoter-TSS (ENSMUSG00000110030.1) TEC-promoter-TSS (ENSMUSG00000110030.1) -360 ENSMUSG00000110030.1 ENSMUSG00000110030 ENSMUST00000211053 Gm45546 TEC Interval_156143 chr8 45076744 45077325 + 0 NA intron (ENSMUSG00000054764.9, intron 1 of 1) protein_coding-intron (ENSMUSG00000054764.9, intron 1 of 1) -8133 ENSMUSG00000054764.9 ENSMUSG00000054764 ENSMUST00000209488 Mtnr1a protein_coding Interval_57875 chr15 24335303 24336398 + 0 NA intron (ENSMUSG00000115198.1, intron 3 of 4) lincRNA-intron (ENSMUSG00000115198.1, intron 3 of 4) -21612 ENSMUSG00000115079.1 ENSMUSG00000115079 ENSMUST00000226175 Gm36147 processed_pseudogene Interval_25976 chr11 53278901 53279154 + 0 NA intron (ENSMUSG00000020361.13, intron 7 of 15) protein_coding-intron (ENSMUSG00000020361.13, intron 7 of 18) 21384 ENSMUSG00000020361.13 ENSMUSG00000020361 ENSMUST00000151854 Hspa4 protein_coding Interval_142559 chr6 143259772 143260029 + 0 NA intron (ENSMUSG00000072679.10, intron 4 of 4) lincRNA-intron (ENSMUSG00000072679.10, intron 3 of 3) 14007 ENSMUSG00000072679.10 ENSMUSG00000072679 ENSMUST00000160951 D6Ertd474e lincRNA Interval_90383 chr2 30101564 30101866 + 0 NA promoter-TSS (ENSMUSG00000039686.14) protein_coding-promoter-TSS (ENSMUSG00000039686.14) -8696 ENSMUSG00000015335.16 ENSMUSG00000015335 ENSMUST00000137001 Zdhhc12 protein_coding Interval_157839 chr8 74847184 74848012 + 0 NA Intergenic Intergenic -13661 ENSMUSG00000079011.9 ENSMUSG00000079011 ENSMUST00000137218 Gm11033 lincRNA Interval_79794 chr18 35146518 35146922 + 0 NA intron (ENSMUSG00000037815.7, intron 2 of 9) protein_coding-intron (ENSMUSG00000037815.7, intron 1 of 17) -59097 ENSMUSG00000117727.1 ENSMUSG00000117727 ENSMUST00000238134 Gm3587 lincRNA Interval_142284 chr6 140450859 140452482 + 0 NA intron (ENSMUSG00000030231.11, intron 1 of 9) protein_coding-intron (ENSMUSG00000030231.11, intron 3 of 30) 31499 ENSMUSG00000107891.1 ENSMUSG00000107891 ENSMUST00000204085 Gm5051 processed_pseudogene Interval_156040 chr8 43139782 43140364 + 0 NA intron (ENSMUSG00000031651.5, intron 2 of 5) protein_coding-intron (ENSMUSG00000031651.5, intron 2 of 5) -3480 ENSMUSG00000031651.5 ENSMUSG00000031651 ENSMUST00000211541 Triml1 protein_coding Interval_16819 chr10 68395267 68395494 + 0 NA Intergenic Intergenic -74238 ENSMUSG00000112157.1 ENSMUSG00000112157 ENSMUST00000218225 4930545H06Rik lincRNA Interval_46954 chr13 73715571 73715822 + 0 NA Intergenic Intergenic 11980 ENSMUSG00000021566.7 ENSMUSG00000021566 ENSMUST00000160958 Slc6a19os antisense Interval_110768 chr4 8187255 8188001 + 0 NA intron (ENSMUSG00000041261.9, intron 4 of 8) protein_coding-intron (ENSMUSG00000041261.9, intron 4 of 8) -20275 ENSMUSG00000079993.2 ENSMUSG00000079993 ENSMUST00000116110 Gm11799 processed_pseudogene Interval_110530 chr4 3630241 3631102 + 0 NA Intergenic Intergenic 11482 ENSMUSG00000088790.1 ENSMUSG00000088790 ENSMUST00000158165 Gm22541 snoRNA Interval_134940 chr6 33955346 33955949 + 0 NA intron (ENSMUSG00000029763.17, intron 17 of 17) protein_coding-intron (ENSMUSG00000029763.17, intron 17 of 17) 36764 ENSMUSG00000087441.1 ENSMUSG00000087441 ENSMUST00000155496 Gm13853 lincRNA Interval_48815 chr13 103620063 103620274 + 0 NA intron (ENSMUSG00000114206.1, intron 1 of 3) lincRNA-intron (ENSMUSG00000114206.1, intron 1 of 3) -21758 ENSMUSG00000096642.1 ENSMUSG00000096642 ENSMUST00000179897 Gm24870 snRNA Interval_142959 chr6 147335124 147335440 + 0 NA Intergenic Intergenic 63445 ENSMUSG00000081023.1 ENSMUSG00000081023 ENSMUST00000118025 Gm15766 processed_pseudogene Interval_141881 chr6 135085698 135086147 + 0 NA Intergenic Intergenic 20271 ENSMUSG00000046733.7 ENSMUSG00000046733 ENSMUST00000050104 Gprc5a protein_coding Interval_128434 chr5 113297862 113298429 + 0 NA intron (ENSMUSG00000042216.13, intron 2 of 17) protein_coding-intron (ENSMUSG00000042216.13, intron 2 of 24) -18809 ENSMUSG00000042216.13 ENSMUSG00000042216 ENSMUST00000140981 Sgsm1 protein_coding Interval_106278 chr3 95090996 95091786 + 0 NA promoter-TSS (ENSMUSG00000064952.1) snoRNA-promoter-TSS (ENSMUSG00000064952.1) -682 ENSMUSG00000064952.1 ENSMUSG00000064952 ENSMUST00000083018 Gm24920 snoRNA Interval_114462 chr4 79362247 79363292 + 0 NA Intergenic Intergenic 35061 ENSMUSG00000083496.1 ENSMUSG00000083496 ENSMUST00000121853 Gm11263 processed_pseudogene Interval_171550 chr9 119142589 119143501 + 0 NA intron (ENSMUSG00000038060.15, intron 29 of 36) protein_coding-intron (ENSMUSG00000038060.15, intron 23 of 26) 7018 ENSMUSG00000010651.4 ENSMUSG00000010651 ENSMUST00000127952 Acaa1b protein_coding Interval_10075 chr1 165634013 165635324 + 0 NA promoter-TSS (ENSMUSG00000026566.15) protein_coding-promoter-TSS (ENSMUSG00000026566.15) 10020 ENSMUSG00000104517.1 ENSMUSG00000104517 ENSMUST00000192126 Gm18407 processed_pseudogene Interval_123242 chr5 30858136 30859144 + 0 NA intron (ENSMUSG00000029166.14, intron 1 of 3) protein_coding-intron (ENSMUSG00000029166.14, intron 1 of 6) 4841 ENSMUSG00000029166.14 ENSMUSG00000029166 ENSMUST00000202025 Mapre3 protein_coding Interval_121110 chr4 153164203 153165033 + 0 NA Intergenic Intergenic -17675 ENSMUSG00000085648.1 ENSMUSG00000085648 ENSMUST00000151703 Gm13173 lincRNA Interval_31298 chr11 99430646 99431231 + 0 NA exon (ENSMUSG00000035775.2, exon 6 of 8) protein_coding-exon (ENSMUSG00000035775.2, exon 6 of 8) 7212 ENSMUSG00000035775.2 ENSMUSG00000035775 ENSMUST00000017743 Krt20 protein_coding Interval_90242 chr2 29245362 29245809 + 0 NA exon (ENSMUSG00000079499.9, exon 2 of 2) processed_transcript-exon (ENSMUSG00000079499.9, exon 2 of 2) 2540 ENSMUSG00000035513.19 ENSMUSG00000035513 ENSMUST00000149096 Ntng2 protein_coding Interval_50389 chr14 12354213 12354514 + 0 NA Intergenic Intergenic -8519 ENSMUSG00000021743.6 ENSMUSG00000021743 ENSMUST00000224023 Fezf2 protein_coding Interval_139409 chr6 99914759 99915532 + 0 NA Intergenic Intergenic 16404 ENSMUSG00000107528.1 ENSMUSG00000107528 ENSMUST00000204919 Gm44442 lincRNA Interval_17766 chr10 79965106 79965435 + 0 NA promoter-TSS (ENSMUSG00000035754.8) protein_coding-promoter-TSS (ENSMUSG00000035754.8) 5115 ENSMUSG00000035754.8 ENSMUSG00000035754 ENSMUST00000218515 Wdr18 protein_coding Interval_39084 chr12 84931897 84932808 + 0 NA intron (ENSMUSG00000042350.13, intron 8 of 18) protein_coding-intron (ENSMUSG00000042350.13, intron 8 of 19) -8840 ENSMUSG00000079645.2 ENSMUSG00000079645 ENSMUST00000116345 Gm17193 sense_intronic Interval_154762 chr8 23179306 23180479 + 0 NA TTS (ENSMUSG00000031545.6) protein_coding-TTS (ENSMUSG00000031545.6) 26623 ENSMUSG00000063672.7 ENSMUSG00000063672 ENSMUST00000071588 Nkx6-3 protein_coding Interval_25952 chr11 53078471 53078979 + 0 NA intron (ENSMUSG00000036264.9, intron 6 of 15) protein_coding-intron (ENSMUSG00000036264.9, intron 6 of 15) 41331 ENSMUSG00000087668.1 ENSMUSG00000087668 ENSMUST00000137096 Gm11186 antisense Interval_59061 chr15 42887720 42888567 + 0 NA Intergenic Intergenic -211394 ENSMUSG00000022309.9 ENSMUSG00000022309 ENSMUST00000227738 Angpt1 protein_coding Interval_37318 chr12 65100074 65101978 + 0 NA exon (ENSMUSG00000055884.8, exon 11 of 11) protein_coding-exon (ENSMUSG00000055884.8, exon 11 of 11) -1020 ENSMUSG00000112992.1 ENSMUSG00000112992 ENSMUST00000223249 Gm47869 processed_pseudogene Interval_36458 chr12 45133775 45134501 + 0 NA intron (ENSMUSG00000112112.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000112112.1, intron 1 of 1) 25131 ENSMUSG00000088852.1 ENSMUSG00000088852 ENSMUST00000158227 Gm24731 snoRNA Interval_153118 chr7 141454787 141455655 + 0 NA promoter-TSS (ENSMUSG00000025509.15) protein_coding-promoter-TSS (ENSMUSG00000025509.15) -1797 ENSMUSG00000025509.15 ENSMUSG00000025509 ENSMUST00000169723 Pnpla2 protein_coding Interval_111471 chr4 21930825 21931913 + 0 NA promoter-TSS (ENSMUSG00000028246.13) protein_coding-promoter-TSS (ENSMUSG00000028246.13) -27087 ENSMUSG00000028246.13 ENSMUSG00000028246 ENSMUST00000155220 Faxc protein_coding Interval_37537 chr12 69668705 69669045 + 0 NA intron (ENSMUSG00000034801.13, intron 1 of 22) protein_coding-intron (ENSMUSG00000034801.13, intron 1 of 22) -51756 ENSMUSG00000034801.13 ENSMUSG00000034801 ENSMUST00000183306 Sos2 protein_coding Interval_1338 chr1 20786747 20789124 + 0 NA intron (ENSMUSG00000041872.9, intron 2 of 2) protein_coding-intron (ENSMUSG00000041872.9, intron 1 of 4) -8381 ENSMUSG00000041872.9 ENSMUSG00000041872 ENSMUST00000190692 Il17f protein_coding Interval_73714 chr17 42948050 42949520 + 0 NA Intergenic Intergenic -67783 ENSMUSG00000023915.5 ENSMUSG00000023915 ENSMUST00000233482 Tnfrsf21 protein_coding Interval_77578 chr17 92210441 92211231 + 0 NA Intergenic Intergenic -24879 ENSMUSG00000117343.1 ENSMUSG00000117343 ENSMUST00000234079 Gm19145 processed_pseudogene Interval_64650 chr16 13884724 13885255 + 0 NA intron (ENSMUSG00000022680.14, intron 2 of 22) protein_coding-intron (ENSMUSG00000022680.14, intron 2 of 23) 17993 ENSMUSG00000022680.14 ENSMUSG00000022680 ENSMUST00000137715 Pdxdc1 protein_coding Interval_5544 chr1 89704499 89704784 + 0 NA intron (ENSMUSG00000055013.16, intron 9 of 16) protein_coding-intron (ENSMUSG00000055013.16, intron 9 of 17) 19839 ENSMUSG00000088775.1 ENSMUSG00000088775 ENSMUST00000158150 Gm26037 misc_RNA Interval_123984 chr5 37009649 37010195 + 0 NA Intergenic Intergenic 31724 ENSMUSG00000097686.1 ENSMUSG00000097686 ENSMUST00000180816 Gm26647 antisense Interval_57806 chr15 21108885 21110263 + 0 NA promoter-TSS (ENSMUSG00000040452.9) protein_coding-promoter-TSS (ENSMUSG00000040452.9) -551 ENSMUSG00000040452.9 ENSMUSG00000040452 ENSMUST00000075132 Cdh12 protein_coding Interval_58185 chr15 30471997 30472305 + 0 NA intron (ENSMUSG00000022240.10, intron 1 of 1) protein_coding-intron (ENSMUSG00000022240.10, intron 2 of 22) 43307 ENSMUSG00000115073.1 ENSMUSG00000115073 ENSMUST00000226263 Gm49283 TEC Interval_68410 chr16 76118064 76118353 + 0 NA Intergenic Intergenic -4405 ENSMUSG00000116695.1 ENSMUSG00000116695 ENSMUST00000231285 4930578N18Rik lincRNA Interval_96189 chr2 120396291 120396518 + 0 NA intron (ENSMUSG00000033808.16, intron 4 of 8) protein_coding-intron (ENSMUSG00000033808.16, intron 3 of 19) 7709 ENSMUSG00000033808.16 ENSMUSG00000033808 ENSMUST00000143182 Tmem87a protein_coding Interval_122641 chr5 24405722 24406008 + 0 NA promoter-TSS (ENSMUSG00000028973.18) protein_coding-promoter-TSS (ENSMUSG00000028973.18) 5267 ENSMUSG00000028973.18 ENSMUSG00000028973 ENSMUST00000151535 Abcb8 protein_coding Interval_20258 chr10 116481690 116482508 + 0 NA Intergenic Intergenic -8664 ENSMUSG00000054934.10 ENSMUSG00000054934 ENSMUST00000087965 Kcnmb4 protein_coding Interval_82622 chr18 75493194 75493431 + 0 NA intron (ENSMUSG00000052928.9, intron 9 of 11) protein_coding-intron (ENSMUSG00000052928.9, intron 9 of 11) -21333 ENSMUSG00000097712.1 ENSMUSG00000097712 ENSMUST00000181913 Gm10532 antisense Interval_13571 chr10 19844962 19845216 + 0 NA Intergenic Intergenic 6370 ENSMUSG00000050473.5 ENSMUSG00000050473 ENSMUST00000059805 Slc35d3 protein_coding Interval_160514 chr8 110196756 110197171 + 0 NA Intergenic Intergenic -18702 ENSMUSG00000046441.5 ENSMUSG00000046441 ENSMUST00000056972 Cmtr2 protein_coding Interval_106917 chr3 101860322 101860929 + 0 NA intron (ENSMUSG00000033147.16, intron 8 of 8) protein_coding-intron (ENSMUSG00000033147.16, intron 11 of 11) -11666 ENSMUSG00000044313.13 ENSMUSG00000044313 ENSMUST00000118411 Mab21l3 protein_coding Interval_47155 chr13 76592885 76593389 + 0 NA intron (ENSMUSG00000021596.16, intron 1 of 7) protein_coding-intron (ENSMUSG00000021596.16, intron 1 of 20) 11313 ENSMUSG00000096675.1 ENSMUSG00000096675 ENSMUST00000104507 Gm24519 snoRNA Interval_140551 chr6 119452109 119452470 + 0 NA intron (ENSMUSG00000030170.14, intron 1 of 4) protein_coding-intron (ENSMUSG00000030170.14, intron 1 of 4) -27379 ENSMUSG00000030019.6 ENSMUSG00000030019 ENSMUST00000032094 Fbxl14 protein_coding Interval_23342 chr11 21581831 21582150 + 0 NA intron (ENSMUSG00000020319.9, intron 1 of 8) protein_coding-intron (ENSMUSG00000020319.9, intron 1 of 17) -10056 ENSMUSG00000020321.16 ENSMUSG00000020321 ENSMUST00000125302 Mdh1 protein_coding Interval_28874 chr11 78956408 78956949 + 0 NA intron (ENSMUSG00000020826.9, intron 24 of 25) protein_coding-intron (ENSMUSG00000020826.9, intron 25 of 26) 13652 ENSMUSG00000001123.15 ENSMUSG00000001123 ENSMUST00000140073 Lgals9 protein_coding Interval_49829 chr13 116784689 116785433 + 0 NA Intergenic Intergenic 53117 ENSMUSG00000114290.1 ENSMUSG00000114290 ENSMUST00000224552 4930435F18Rik lincRNA Interval_131057 chr5 134814643 134815162 + 0 NA intron (ENSMUSG00000107318.1, intron 3 of 4) antisense-intron (ENSMUSG00000107318.1, intron 3 of 4) 67860 ENSMUSG00000107318.1 ENSMUSG00000107318 ENSMUST00000200700 Gm30003 antisense Interval_169667 chr9 100001417 100001630 + 0 NA Intergenic Intergenic -22125 ENSMUSG00000101584.2 ENSMUSG00000101584 ENSMUST00000215896 4930519F24Rik lincRNA Interval_93080 chr2 69975124 69975422 + 0 NA intron (ENSMUSG00000044308.17, intron 23 of 38) protein_coding-intron (ENSMUSG00000044308.17, intron 23 of 38) -13513 ENSMUSG00000044308.17 ENSMUSG00000044308 ENSMUST00000123890 Ubr3 protein_coding Interval_147534 chr7 68136638 68136980 + 0 NA intron (ENSMUSG00000005533.10, intron 2 of 20) protein_coding-intron (ENSMUSG00000005533.10, intron 2 of 20) -75029 ENSMUSG00000005533.10 ENSMUSG00000005533 ENSMUST00000208871 Igf1r protein_coding Interval_162578 chr9 4977635 4979067 + 0 NA exon (ENSMUSG00000110644.1, exon 1 of 1) processed_pseudogene-exon (ENSMUSG00000110644.1, exon 1 of 1) 392 ENSMUSG00000110644.1 ENSMUSG00000110644 ENSMUST00000212452 Gm7390 processed_pseudogene Interval_24229 chr11 31663697 31664661 + 0 NA Intergenic Intergenic 7548 ENSMUSG00000044502.16 ENSMUSG00000044502 ENSMUST00000109415 Bod1 protein_coding Interval_70736 chr17 14075675 14076810 + 0 NA Intergenic Intergenic -16711 ENSMUSG00000101361.2 ENSMUSG00000101361 ENSMUST00000186636 Gm7358 protein_coding Interval_165993 chr9 55255129 55255309 + 0 NA intron (ENSMUSG00000032311.17, intron 1 of 6) protein_coding-intron (ENSMUSG00000032311.17, intron 3 of 3) 28406 ENSMUSG00000032311.17 ENSMUSG00000032311 ENSMUST00000133659 Nrg4 protein_coding Interval_128339 chr5 112627756 112628243 + 0 NA Intergenic Intergenic -12336 ENSMUSG00000105735.1 ENSMUSG00000105735 ENSMUST00000195895 4933415J04Rik TEC Interval_54627 chr14 72449673 72450005 + 0 NA exon (ENSMUSG00000109446.1, exon 39 of 55) protein_coding-exon (ENSMUSG00000109446.1, exon 39 of 55) 41999 ENSMUSG00000109446.1 ENSMUSG00000109446 ENSMUST00000208955 Gm9195 protein_coding Interval_88215 chr19 60737349 60738495 + 0 NA Intergenic Intergenic -18065 ENSMUSG00000072437.4 ENSMUSG00000072437 ENSMUST00000088237 Nanos1 protein_coding Interval_6443 chr1 108939669 108939893 + 0 NA Intergenic Intergenic 58979 ENSMUSG00000100831.1 ENSMUSG00000100831 ENSMUST00000188261 Gm17847 processed_pseudogene Interval_163467 chr9 21575306 21575570 + 0 NA exon (ENSMUSG00000032185.15, exon 4 of 16) protein_coding-exon (ENSMUSG00000032185.15, exon 4 of 16) -11907 ENSMUSG00000032185.15 ENSMUSG00000032185 ENSMUST00000130100 Carm1 protein_coding Interval_117879 chr4 126847238 126847565 + 0 NA intron (ENSMUSG00000028830.14, intron 18 of 23) protein_coding-intron (ENSMUSG00000028830.14, intron 18 of 20) 12122 ENSMUSG00000028830.14 ENSMUSG00000028830 ENSMUST00000125225 AU040320 protein_coding Interval_121436 chr4 155783593 155784899 + 0 NA exon (ENSMUSG00000073680.2, exon 2 of 2) protein_coding-exon (ENSMUSG00000073680.2, exon 2 of 2) 1628 ENSMUSG00000073680.2 ENSMUSG00000073680 ENSMUST00000097742 Tmem88b protein_coding Interval_68731 chr16 85134477 85134688 + 0 NA intron (ENSMUSG00000022892.11, intron 1 of 13) protein_coding-intron (ENSMUSG00000022892.11, intron 1 of 15) -14247 ENSMUSG00000114988.1 ENSMUSG00000114988 ENSMUST00000227036 Gm49226 antisense Interval_168707 chr9 86167920 86168309 + 0 NA Intergenic Intergenic 7901 ENSMUSG00000111418.1 ENSMUSG00000111418 ENSMUST00000216119 Gm18016 processed_pseudogene Interval_158421 chr8 83624000 83625179 + 0 NA Intergenic Intergenic 16036 ENSMUSG00000005483.10 ENSMUSG00000005483 ENSMUST00000212300 Dnajb1 protein_coding Interval_125572 chr5 71924538 71924876 + 0 NA intron (ENSMUSG00000029212.11, intron 5 of 7) protein_coding-intron (ENSMUSG00000029212.11, intron 4 of 8) 108781 ENSMUSG00000080736.1 ENSMUSG00000080736 ENSMUST00000118973 Gm15617 processed_pseudogene Interval_106602 chr3 97657724 97659006 + 0 NA exon (ENSMUSG00000038205.12, exon 1 of 8) protein_coding-exon (ENSMUSG00000038205.12, exon 1 of 8) -11833 ENSMUSG00000038205.12 ENSMUSG00000038205 ENSMUST00000198337 Prkab2 protein_coding Interval_125783 chr5 74126158 74127046 + 0 NA Intergenic Intergenic 33072 ENSMUSG00000093355.1 ENSMUSG00000093355 ENSMUST00000175614 Snora26 snoRNA Interval_138035 chr6 84485930 84486104 + 0 NA Intergenic Intergenic -49859 ENSMUSG00000107926.1 ENSMUSG00000107926 ENSMUST00000204799 4930504D19Rik lincRNA Interval_156096 chr8 44448836 44449170 + 0 NA Intergenic Intergenic 99071 ENSMUSG00000092685.1 ENSMUSG00000092685 ENSMUST00000174944 Gm26241 miRNA Interval_145063 chr7 29822602 29822833 + 0 NA intron (ENSMUSG00000011427.16, intron 1 of 1) protein_coding-intron (ENSMUSG00000011427.16, intron 1 of 4) 3726 ENSMUSG00000011427.16 ENSMUSG00000011427 ENSMUST00000207328 Zfp790 protein_coding Interval_94798 chr2 94417494 94417714 + 0 NA TTS (ENSMUSG00000027193.12) protein_coding-TTS (ENSMUSG00000027193.12) 11453 ENSMUSG00000045464.5 ENSMUSG00000045464 ENSMUST00000152313 2810002D19Rik processed_transcript Interval_65572 chr16 23452454 23453123 + 0 NA intron (ENSMUSG00000022887.9, intron 15 of 15) protein_coding-intron (ENSMUSG00000022887.9, intron 15 of 15) 23655 ENSMUSG00000033383.6 ENSMUSG00000033383 ENSMUST00000038730 Rtp1 protein_coding Interval_13610 chr10 20178949 20179277 + 0 NA intron (ENSMUSG00000019996.17, intron 1 of 5) protein_coding-intron (ENSMUSG00000019996.17, intron 1 of 17) 8125 ENSMUSG00000019996.17 ENSMUSG00000019996 ENSMUST00000216308 Map7 protein_coding Interval_52396 chr14 45592014 45592261 + 0 NA exon (ENSMUSG00000037697.19, exon 14 of 14) protein_coding-exon (ENSMUSG00000037697.19, exon 14 of 14) 21929 ENSMUSG00000115148.1 ENSMUSG00000115148 ENSMUST00000227258 Gm49125 TEC Interval_27449 chr11 67880058 67880257 + 0 NA intron (ENSMUSG00000020905.11, intron 11 of 14) protein_coding-intron (ENSMUSG00000020905.11, intron 11 of 14) 41052 ENSMUSG00000020905.11 ENSMUSG00000020905 ENSMUST00000152120 Usp43 protein_coding Interval_19675 chr10 107747031 107747449 + 0 NA Intergenic Intergenic -27213 ENSMUSG00000035916.8 ENSMUSG00000035916 ENSMUST00000218399 Ptprq protein_coding Interval_4987 chr1 83716805 83717755 + 0 NA intron (ENSMUSG00000100580.6, intron 3 of 4) lincRNA-intron (ENSMUSG00000100580.6, intron 3 of 4) -78632 ENSMUSG00000094946.1 ENSMUSG00000094946 ENSMUST00000178653 Gm25754 miRNA Interval_162219 chr8 126081129 126081496 + 0 NA Intergenic Intergenic -20788 ENSMUSG00000110437.1 ENSMUSG00000110437 ENSMUST00000212698 Gm45876 TEC Interval_29063 chr11 80115070 80115257 + 0 NA intron (ENSMUSG00000017550.14, intron 10 of 18) protein_coding-intron (ENSMUSG00000017550.14, intron 14 of 22) 12160 ENSMUSG00000017550.14 ENSMUSG00000017550 ENSMUST00000154168 Atad5 protein_coding Interval_120105 chr4 141864692 141865708 + 0 NA intron (ENSMUSG00000040659.3, intron 1 of 3) protein_coding-intron (ENSMUSG00000040659.3, intron 1 of 3) 9720 ENSMUSG00000040659.3 ENSMUSG00000040659 ENSMUST00000036854 Efhd2 protein_coding Interval_110821 chr4 8728652 8730741 + 0 NA intron (ENSMUSG00000041235.12, intron 1 of 1) protein_coding-intron (ENSMUSG00000041235.12, intron 1 of 37) -56114 ENSMUSG00000082122.1 ENSMUSG00000082122 ENSMUST00000120923 Gm11809 processed_pseudogene Interval_2600 chr1 41577303 41577612 + 0 NA Intergenic Intergenic -47914 ENSMUSG00000100185.1 ENSMUSG00000100185 ENSMUST00000191087 Gm28634 lincRNA Interval_86342 chr19 38894633 38895501 + 0 NA intron (ENSMUSG00000048720.8, intron 3 of 10) protein_coding-intron (ENSMUSG00000048720.8, intron 3 of 12) 9825 ENSMUSG00000089545.1 ENSMUSG00000089545 ENSMUST00000158920 Gm25838 misc_RNA Interval_80670 chr18 46143533 46143968 + 0 NA Intergenic Intergenic -30491 ENSMUSG00000104009.1 ENSMUSG00000104009 ENSMUST00000193986 Gm38337 TEC Interval_116150 chr4 108165117 108166244 + 0 NA intron (ENSMUSG00000028601.18, intron 1 of 8) protein_coding-intron (ENSMUSG00000028601.18, intron 1 of 9) -6983 ENSMUSG00000028601.18 ENSMUSG00000028601 ENSMUST00000106691 Echdc2 protein_coding Interval_160259 chr8 107514638 107514907 + 0 NA intron (ENSMUSG00000031930.11, intron 7 of 7) protein_coding-intron (ENSMUSG00000031930.11, intron 7 of 23) -36472 ENSMUSG00000065439.1 ENSMUSG00000065439 ENSMUST00000083505 Mir140 miRNA Interval_96104 chr2 119786163 119786378 + 0 NA intron (ENSMUSG00000034032.15, intron 1 of 23) protein_coding-intron (ENSMUSG00000034032.15, intron 1 of 23) 1250 ENSMUSG00000034032.15 ENSMUSG00000034032 ENSMUST00000141800 Rpap1 protein_coding Interval_91130 chr2 35322123 35322685 + 0 NA intron (ENSMUSG00000026880.11, intron 4 of 6) protein_coding-intron (ENSMUSG00000026880.11, intron 4 of 6) -1899 ENSMUSG00000026880.11 ENSMUSG00000026880 ENSMUST00000202568 Stom protein_coding Interval_142032 chr6 136633520 136633763 + 0 NA intron (ENSMUSG00000030214.7, intron 6 of 8) protein_coding-intron (ENSMUSG00000030214.7, intron 6 of 10) 13009 ENSMUSG00000107760.1 ENSMUSG00000107760 ENSMUST00000204462 Gm44401 TEC Interval_8231 chr1 136624278 136626048 + 0 NA promoter-TSS (ENSMUSG00000097229.1) lincRNA-promoter-TSS (ENSMUSG00000097229.1) 262 ENSMUSG00000041483.14 ENSMUSG00000041483 ENSMUST00000112046 Zfp281 protein_coding Interval_129615 chr5 121348052 121349221 + 0 NA exon (ENSMUSG00000042744.16, exon 61 of 76) protein_coding-exon (ENSMUSG00000042744.16, exon 61 of 76) -8208 ENSMUSG00000077347.1 ENSMUSG00000077347 ENSMUST00000104159 Gm24671 snRNA Interval_134173 chr6 22355578 22356579 + 0 NA promoter-TSS (ENSMUSG00000029672.16) protein_coding-promoter-TSS (ENSMUSG00000029672.16) -12165 ENSMUSG00000029672.16 ENSMUSG00000029672 ENSMUST00000168965 Fam3c protein_coding Interval_70330 chr17 8533800 8534108 + 0 NA intron (ENSMUSG00000023868.17, intron 1 of 3) protein_coding-intron (ENSMUSG00000023868.17, intron 1 of 21) 32996 ENSMUSG00000099104.1 ENSMUSG00000099104 ENSMUST00000184183 Gm17087 protein_coding Interval_48591 chr13 100558021 100558651 + 0 NA intron (ENSMUSG00000114360.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000114360.1, intron 1 of 2) 910 ENSMUSG00000114360.1 ENSMUSG00000114360 ENSMUST00000224080 Gm48596 lincRNA Interval_158151 chr8 79248263 79248493 + 0 NA exon (ENSMUSG00000031682.5, exon 1 of 6) protein_coding-exon (ENSMUSG00000031682.5, exon 1 of 6) 165 ENSMUSG00000031682.5 ENSMUSG00000031682 ENSMUST00000210889 1700011L22Rik protein_coding Interval_132491 chr5 145292516 145293305 + 0 NA exon (ENSMUSG00000104682.1, exon 1 of 1) TEC-exon (ENSMUSG00000104682.1, exon 1 of 1) 140 ENSMUSG00000104682.1 ENSMUSG00000104682 ENSMUST00000197174 Gm42636 TEC Interval_128378 chr5 112970755 112971336 + 0 NA intron (ENSMUSG00000042249.11, intron 3 of 20) protein_coding-intron (ENSMUSG00000042249.11, intron 3 of 20) 44469 ENSMUSG00000042249.11 ENSMUSG00000042249 ENSMUST00000197776 Grk3 protein_coding Interval_40410 chr12 104698109 104698489 + 0 NA intron (ENSMUSG00000041415.10, intron 1 of 1) protein_coding-intron (ENSMUSG00000041415.10, intron 22 of 26) 23753 ENSMUSG00000041415.10 ENSMUSG00000041415 ENSMUST00000222002 Dicer1 protein_coding Interval_122656 chr5 24502959 24503270 + 0 NA exon (ENSMUSG00000067724.5, exon 2 of 2) protein_coding-exon (ENSMUSG00000067724.5, exon 2 of 2) 24088 ENSMUSG00000067724.5 ENSMUSG00000067724 ENSMUST00000088311 Gbx1 protein_coding Interval_51041 chr14 21750219 21751470 + 0 NA promoter-TSS (ENSMUSG00000021770.11) protein_coding-promoter-TSS (ENSMUSG00000021770.11) 296 ENSMUSG00000021770.11 ENSMUSG00000021770 ENSMUST00000142023 Samd8 protein_coding Interval_95970 chr2 118790164 118791191 + 0 NA TTS (ENSMUSG00000040035.14) protein_coding-TTS (ENSMUSG00000040035.14) 10918 ENSMUSG00000040035.14 ENSMUSG00000040035 ENSMUST00000142072 Disp2 protein_coding Interval_151093 chr7 118502218 118502876 + 0 NA Intergenic Intergenic -10572 ENSMUSG00000095115.2 ENSMUSG00000095115 ENSMUST00000178344 Itpripl2 protein_coding Interval_44947 chr13 50464699 50465409 + 0 NA intron (ENSMUSG00000101136.1, intron 1 of 1) antisense-intron (ENSMUSG00000101136.1, intron 1 of 1) -2253 ENSMUSG00000071909.2 ENSMUSG00000071909 ENSMUST00000096633 Nutm2 protein_coding Interval_694 chr1 9966965 9968530 + 0 NA TTS (ENSMUSG00000025916.10) protein_coding-TTS (ENSMUSG00000025916.10) 185 ENSMUSG00000099032.2 ENSMUSG00000099032 ENSMUST00000097824 Tcf24 protein_coding Interval_111631 chr4 24865443 24866477 + 0 NA Intergenic Intergenic -32216 ENSMUSG00000028261.13 ENSMUSG00000028261 ENSMUST00000151249 Ndufaf4 protein_coding Interval_161951 chr8 124011461 124013167 + 0 NA intron (ENSMUSG00000038697.15, intron 1 of 1) protein_coding-intron (ENSMUSG00000038697.15, intron 1 of 4) 7009 ENSMUSG00000110612.1 ENSMUSG00000110612 ENSMUST00000211825 Gm17827 processed_pseudogene Interval_27905 chr11 70754916 70756094 + 0 NA promoter-TSS (ENSMUSG00000085502.1) lincRNA-promoter-TSS (ENSMUSG00000085502.1) -354 ENSMUSG00000085502.1 ENSMUSG00000085502 ENSMUST00000127333 Gm12320 lincRNA Interval_29318 chr11 82901879 82902178 + 0 NA promoter-TSS (ENSMUSG00000020692.14) protein_coding-promoter-TSS (ENSMUSG00000020692.14) 2608 ENSMUSG00000020692.14 ENSMUSG00000020692 ENSMUST00000147915 Nle1 protein_coding Interval_6578 chr1 117457778 117459680 + 0 NA Intergenic Intergenic -65197 ENSMUSG00000101154.1 ENSMUSG00000101154 ENSMUST00000189740 Gm17777 processed_pseudogene Interval_72319 chr17 29185361 29185996 + 0 NA intron (ENSMUSG00000024008.16, intron 10 of 13) protein_coding-intron (ENSMUSG00000024008.16, intron 9 of 20) -26173 ENSMUSG00000024008.16 ENSMUSG00000024008 ENSMUST00000126755 Cpne5 protein_coding Interval_37230 chr12 61704997 61705741 + 0 NA intron (ENSMUSG00000035653.16, intron 2 of 5) protein_coding-intron (ENSMUSG00000035653.16, intron 2 of 3) -47177 ENSMUSG00000113588.1 ENSMUSG00000113588 ENSMUST00000220943 Gm48328 TEC Interval_84689 chr19 15224994 15225611 + 0 NA Intergenic Intergenic -264536 ENSMUSG00000063586.1 ENSMUSG00000063586 ENSMUST00000072982 Gm5513 processed_pseudogene Interval_103317 chr3 38568247 38569367 + 0 NA Intergenic Intergenic -10139 ENSMUSG00000105360.1 ENSMUSG00000105360 ENSMUST00000198301 Gm7824 processed_pseudogene Interval_172361 chrX 13752137 13752723 + 0 NA intron (ENSMUSG00000031012.17, intron 1 of 23) protein_coding-intron (ENSMUSG00000031012.17, intron 2 of 24) 33600 ENSMUSG00000031012.17 ENSMUSG00000031012 ENSMUST00000155989 Cask protein_coding Interval_150779 chr7 114332284 114332563 + 0 NA intron (ENSMUSG00000087475.3, intron 1 of 3) lincRNA-intron (ENSMUSG00000087475.3, intron 1 of 3) -56356 ENSMUSG00000030751.18 ENSMUSG00000030751 ENSMUST00000210966 Psma1 protein_coding Interval_76782 chr17 84006411 84006652 + 0 NA intron (ENSMUSG00000117431.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000117431.1, intron 1 of 1) -2363 ENSMUSG00000117431.1 ENSMUSG00000117431 ENSMUST00000235072 8430430B14Rik lincRNA Interval_33189 chr11 115097136 115097397 + 0 NA intron (ENSMUSG00000020732.13, intron 1 of 1) protein_coding-intron (ENSMUSG00000020732.13, intron 1 of 8) 29525 ENSMUSG00000047798.15 ENSMUSG00000047798 ENSMUST00000149335 Cd300lf protein_coding Interval_8163 chr1 136173290 136175629 + 0 NA exon (ENSMUSG00000041642.18, exon 35 of 35) protein_coding-exon (ENSMUSG00000041642.18, exon 35 of 35) 14101 ENSMUSG00000041642.18 ENSMUSG00000041642 ENSMUST00000165333 Kif21b protein_coding Interval_142702 chr6 145061389 145061781 + 0 NA intron (ENSMUSG00000030268.17, intron 1 of 10) protein_coding-intron (ENSMUSG00000030268.17, intron 1 of 9) 5196 ENSMUSG00000086643.1 ENSMUSG00000086643 ENSMUST00000141440 Gm15687 antisense Interval_170607 chr9 109259374 109259597 + 0 NA Intergenic Intergenic -24752 ENSMUSG00000061701.11 ENSMUSG00000061701 ENSMUST00000197329 Fbxw20 protein_coding Interval_80748 chr18 46795409 46796401 + 0 NA Intergenic Intergenic 24580 ENSMUSG00000117372.1 ENSMUSG00000117372 ENSMUST00000234567 Gm49972 TEC Interval_49217 chr13 109558152 109558997 + 0 NA intron (ENSMUSG00000021699.17, intron 1 of 14) protein_coding-intron (ENSMUSG00000021699.17, intron 1 of 14) 233830 ENSMUSG00000076946.2 ENSMUSG00000076946 ENSMUST00000103758 Mir582 miRNA Interval_11852 chr1 186278216 186278654 + 0 NA Intergenic Intergenic -68880 ENSMUSG00000102217.1 ENSMUSG00000102217 ENSMUST00000192552 Gm37491 TEC Interval_61737 chr15 83664386 83664947 + 0 NA intron (ENSMUSG00000016763.15, intron 4 of 21) protein_coding-intron (ENSMUSG00000016763.15, intron 4 of 22) -50927 ENSMUSG00000016763.15 ENSMUSG00000016763 ENSMUST00000229057 Scube1 protein_coding Interval_88958 chr2 13543893 13545286 + 0 NA promoter-TSS (ENSMUSG00000026723.10) protein_coding-promoter-TSS (ENSMUSG00000026723.10) 74 ENSMUSG00000026723.10 ENSMUSG00000026723 ENSMUST00000144957 Trdmt1 protein_coding Interval_113236 chr4 51359485 51359707 + 0 NA Intergenic Intergenic -105569 ENSMUSG00000019836.5 ENSMUSG00000019836 ENSMUST00000118392 Amd-ps4 processed_pseudogene Interval_46381 chr13 64357298 64357840 + 0 NA Intergenic Intergenic -3483 ENSMUSG00000113683.1 ENSMUSG00000113683 ENSMUST00000221233 Gm47123 antisense Interval_26898 chr11 61387508 61388491 + 0 NA Intergenic Intergenic -9654 ENSMUSG00000010122.14 ENSMUSG00000010122 ENSMUST00000148671 Slc47a1 protein_coding Interval_107998 chr3 119300917 119301270 + 0 NA intron (ENSMUSG00000033308.16, intron 19 of 22) protein_coding-intron (ENSMUSG00000033308.16, intron 19 of 22) 337781 ENSMUSG00000087806.1 ENSMUSG00000087806 ENSMUST00000157181 Gm23432 snoRNA Interval_84273 chr19 9159128 9160483 + 0 NA intron (ENSMUSG00000024658.7, intron 2 of 5) antisense-intron (ENSMUSG00000024658.7, intron 2 of 5) -24274 ENSMUSG00000024654.8 ENSMUSG00000024654 ENSMUST00000150353 Asrgl1 protein_coding Interval_3119 chr1 53635631 53636230 + 0 NA intron (ENSMUSG00000096141.2, intron 12 of 65) protein_coding-intron (ENSMUSG00000096141.2, intron 12 of 65) 70854 ENSMUSG00000096141.2 ENSMUSG00000096141 ENSMUST00000189677 Dnah7a protein_coding Interval_127874 chr5 108460705 108462046 + 0 NA promoter-TSS (ENSMUSG00000033623.13) protein_coding-promoter-TSS (ENSMUSG00000033623.13) -12475 ENSMUSG00000029490.4 ENSMUSG00000029490 ENSMUST00000238630 Mfsd7a protein_coding Interval_121467 chr4 155998179 155998409 + 0 NA intron (ENSMUSG00000029076.14, intron 3 of 7) protein_coding-intron (ENSMUSG00000029076.14, intron 2 of 6) -5645 ENSMUSG00000050796.4 ENSMUSG00000050796 ENSMUST00000052185 B3galt6 protein_coding Interval_87197 chr19 46819064 46819802 + 0 NA intron (ENSMUSG00000064105.13, intron 1 of 1) protein_coding-intron (ENSMUSG00000064105.13, intron 1 of 6) -46227 ENSMUSG00000064105.13 ENSMUSG00000064105 ENSMUST00000235671 Cnnm2 protein_coding Interval_135464 chr6 39454617 39456674 + 0 NA Intergenic Intergenic 30811 ENSMUSG00000038456.9 ENSMUSG00000038456 ENSMUST00000154149 Dennd2a protein_coding Interval_53808 chr14 62025842 62026118 + 0 NA Intergenic Intergenic 13661 ENSMUSG00000114368.1 ENSMUSG00000114368 ENSMUST00000224570 Gm47953 processed_pseudogene Interval_40806 chr12 108526045 108527067 + 0 NA intron (ENSMUSG00000058070.14, intron 13 of 18) protein_coding-intron (ENSMUSG00000058070.14, intron 15 of 21) 28908 ENSMUSG00000097788.2 ENSMUSG00000097788 ENSMUST00000220796 Gm16596 antisense Interval_126045 chr5 77071157 77071960 + 0 NA Intergenic Intergenic -22974 ENSMUSG00000087541.1 ENSMUSG00000087541 ENSMUST00000148568 Hopxos antisense Interval_37623 chr12 70488477 70489739 + 0 NA intron (ENSMUSG00000113944.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000113944.1, intron 1 of 1) 10493 ENSMUSG00000113944.1 ENSMUSG00000113944 ENSMUST00000222328 Gm48847 lincRNA Interval_142821 chr6 146170487 146171016 + 0 NA intron (ENSMUSG00000030287.15, intron 50 of 55) protein_coding-intron (ENSMUSG00000030287.15, intron 51 of 56) 61728 ENSMUSG00000030287.15 ENSMUSG00000030287 ENSMUST00000111673 Itpr2 protein_coding Interval_70260 chr17 7759426 7759688 + 0 NA intron (ENSMUSG00000071984.11, intron 14 of 22) protein_coding-intron (ENSMUSG00000071984.11, intron 1 of 5) 54717 ENSMUSG00000094603.1 ENSMUSG00000094603 ENSMUST00000177784 Gm25872 miRNA Interval_9852 chr1 163150161 163151077 + 0 NA Intergenic Intergenic 32392 ENSMUSG00000089174.1 ENSMUSG00000089174 ENSMUST00000158549 Gm22434 snoRNA Interval_155779 chr8 37480497 37481453 + 0 NA Intergenic Intergenic -79955 ENSMUSG00000109820.1 ENSMUSG00000109820 ENSMUST00000210980 Gm45654 processed_pseudogene Interval_57111 chr15 6602137 6602711 + 0 NA intron (ENSMUSG00000022148.16, intron 1 of 5) protein_coding-intron (ENSMUSG00000022148.16, intron 1 of 17) 4458 ENSMUSG00000089647.2 ENSMUSG00000089647 ENSMUST00000228703 Gm2245 antisense Interval_166727 chr9 62294966 62295429 + 0 NA Intergenic Intergenic -3305 ENSMUSG00000111193.1 ENSMUSG00000111193 ENSMUST00000216565 Gm35288 lincRNA Interval_14658 chr10 38156693 38157688 + 0 NA Intergenic Intergenic -18590 ENSMUSG00000111234.1 ENSMUSG00000111234 ENSMUST00000215643 4930591E09Rik lincRNA Interval_100220 chr2 167746920 167748216 + 0 NA Intergenic Intergenic -29899 ENSMUSG00000084797.1 ENSMUSG00000084797 ENSMUST00000127441 Gm14321 lincRNA Interval_56434 chr14 118713010 118714170 + 0 NA Intergenic Intergenic -14098 ENSMUSG00000032849.14 ENSMUSG00000032849 ENSMUST00000227480 Abcc4 protein_coding Interval_104714 chr3 69659650 69660546 + 0 NA Intergenic Intergenic -1668 ENSMUSG00000102342.1 ENSMUSG00000102342 ENSMUST00000193752 Gm37380 processed_pseudogene Interval_47766 chr13 92469449 92470201 + 0 NA intron (ENSMUSG00000034334.8, intron 2 of 4) protein_coding-intron (ENSMUSG00000034334.8, intron 3 of 5) 14190 ENSMUSG00000034334.8 ENSMUSG00000034334 ENSMUST00000040106 Fam151b protein_coding Interval_134017 chr6 17725950 17726617 + 0 NA intron (ENSMUSG00000029534.17, intron 1 of 7) protein_coding-intron (ENSMUSG00000029534.17, intron 1 of 14) 8705 ENSMUSG00000106822.1 ENSMUSG00000106822 ENSMUST00000202933 Gm43533 TEC Interval_37873 chr12 72731534 72732114 + 0 NA Intergenic Intergenic 9758 ENSMUSG00000112989.1 ENSMUSG00000112989 ENSMUST00000221318 Gm48143 processed_pseudogene Interval_103942 chr3 55242247 55243548 + 0 NA intron (ENSMUSG00000027797.15, intron 1 of 16) protein_coding-intron (ENSMUSG00000027797.15, intron 1 of 16) 60869 ENSMUSG00000027794.4 ENSMUSG00000027794 ENSMUST00000029369 Sohlh2 protein_coding Interval_114447 chr4 77588191 77589132 + 0 NA intron (ENSMUSG00000028399.18, intron 3 of 6) protein_coding-intron (ENSMUSG00000028399.18, intron 3 of 14) -623294 ENSMUSG00000092492.1 ENSMUSG00000092492 ENSMUST00000173049 B230208B08Rik processed_transcript Interval_85198 chr19 23687048 23688808 + 0 NA exon (ENSMUSG00000074925.4, exon 1 of 6) protein_coding-exon (ENSMUSG00000074925.4, exon 1 of 6) 499 ENSMUSG00000074925.4 ENSMUSG00000074925 ENSMUST00000067077 Ptar1 protein_coding Interval_75069 chr17 62862438 62863089 + 0 NA intron (ENSMUSG00000048915.12, intron 1 of 3) protein_coding-intron (ENSMUSG00000048915.12, intron 1 of 4) 18381 ENSMUSG00000048915.12 ENSMUSG00000048915 ENSMUST00000078839 Efna5 protein_coding Interval_8413 chr1 138987862 138988409 + 0 NA intron (ENSMUSG00000056268.15, intron 1 of 20) protein_coding-intron (ENSMUSG00000056268.15, intron 1 of 20) -3638 ENSMUSG00000102626.1 ENSMUSG00000102626 ENSMUST00000194152 Gm18553 processed_pseudogene Interval_849 chr1 12636720 12637338 + 0 NA Intergenic Intergenic -18838 ENSMUSG00000098163.1 ENSMUSG00000098163 ENSMUST00000182390 Gm6216 processed_pseudogene Interval_109752 chr3 146562758 146563343 + 0 NA exon (ENSMUSG00000105407.1, exon 1 of 1) processed_pseudogene-exon (ENSMUSG00000105407.1, exon 1 of 1) 219 ENSMUSG00000105407.1 ENSMUSG00000105407 ENSMUST00000197340 Gm36259 processed_pseudogene Interval_69890 chr16 97935600 97936557 + 0 NA intron (ENSMUSG00000045975.8, intron 1 of 6) protein_coding-intron (ENSMUSG00000045975.8, intron 1 of 6) -13472 ENSMUSG00000045975.8 ENSMUSG00000045975 ENSMUST00000231953 C2cd2 protein_coding Interval_168779 chr9 86980181 86982116 + 0 NA TTS (ENSMUSG00000111874.1) lincRNA-TTS (ENSMUSG00000111874.1) 25015 ENSMUSG00000111874.1 ENSMUSG00000111874 ENSMUST00000217543 Gm36539 lincRNA Interval_74926 chr17 57361795 57361999 + 0 NA intron (ENSMUSG00000004730.15, intron 2 of 3) protein_coding-intron (ENSMUSG00000004730.15, intron 2 of 22) 3198 ENSMUSG00000004730.15 ENSMUSG00000004730 ENSMUST00000004850 Adgre1 protein_coding Interval_30203 chr11 90534320 90534545 + 0 NA TTS (ENSMUSG00000020546.14) protein_coding-TTS (ENSMUSG00000020546.14) 4714 ENSMUSG00000081043.1 ENSMUSG00000081043 ENSMUST00000119669 Gm11512 processed_pseudogene Interval_87674 chr19 54244614 54245770 + 0 NA Intergenic Intergenic 46801 ENSMUSG00000118324.1 ENSMUSG00000118324 ENSMUST00000237525 Gm50187 TEC Interval_15608 chr10 52284489 52285032 + 0 NA exon (ENSMUSG00000019891.15, exon 3 of 3) protein_coding-exon (ENSMUSG00000019891.15, exon 3 of 3) 51123 ENSMUSG00000019891.15 ENSMUSG00000019891 ENSMUST00000218582 Dcbld1 protein_coding Interval_143081 chr6 149129249 149129698 + 0 NA promoter-TSS (ENSMUSG00000067292.3) protein_coding-promoter-TSS (ENSMUSG00000067292.3) -697 ENSMUSG00000067292.3 ENSMUSG00000067292 ENSMUST00000087348 Gm10203 protein_coding Interval_165530 chr9 49053692 49056085 + 0 NA promoter-TSS (ENSMUSG00000032264.9) protein_coding-promoter-TSS (ENSMUSG00000032264.9) 577 ENSMUSG00000105991.1 ENSMUSG00000105991 ENSMUST00000198232 1700042D02Rik lincRNA Interval_103581 chr3 50376236 50376630 + 0 NA intron (ENSMUSG00000027737.10, intron 11 of 11) protein_coding-intron (ENSMUSG00000027737.10, intron 11 of 11) 27850 ENSMUSG00000103907.1 ENSMUSG00000103907 ENSMUST00000193524 Gm37498 TEC Interval_139518 chr6 100709447 100710354 + 0 NA intron (ENSMUSG00000030074.9, intron 1 of 6) protein_coding-intron (ENSMUSG00000030074.9, intron 1 of 6) 5145 ENSMUSG00000030074.9 ENSMUSG00000030074 ENSMUST00000141333 Gxylt2 protein_coding Interval_40141 chr12 101923757 101924168 + 0 NA intron (ENSMUSG00000021189.11, intron 3 of 3) protein_coding-intron (ENSMUSG00000021189.11, intron 10 of 10) 10722 ENSMUSG00000093579.1 ENSMUSG00000093579 ENSMUST00000177547 Gm20036 processed_transcript Interval_168456 chr9 80955835 80956298 + 0 NA intron (ENSMUSG00000097655.3, intron 1 of 3) lincRNA-intron (ENSMUSG00000097655.3, intron 1 of 3) 630 ENSMUSG00000097655.3 ENSMUSG00000097655 ENSMUST00000181827 Gm26713 lincRNA Interval_83627 chr19 3307104 3307770 + 0 NA Intergenic Intergenic 10144 ENSMUSG00000118213.1 ENSMUSG00000118213 ENSMUST00000237542 Gm50307 processed_pseudogene Interval_90993 chr2 33986404 33986811 + 0 NA Intergenic Intergenic 8361 ENSMUSG00000086904.1 ENSMUSG00000086904 ENSMUST00000156633 Gm13404 lincRNA Interval_72034 chr17 27660315 27661626 + 0 NA intron (ENSMUSG00000040276.15, intron 1 of 9) protein_coding-intron (ENSMUSG00000040276.15, intron 1 of 9) 5382 ENSMUSG00000040276.15 ENSMUSG00000040276 ENSMUST00000231854 Pacsin1 protein_coding Interval_61458 chr15 81751463 81751990 + 0 NA intron (ENSMUSG00000022390.11, intron 1 of 5) protein_coding-intron (ENSMUSG00000022390.11, intron 1 of 22) -6196 ENSMUSG00000022391.16 ENSMUSG00000022391 ENSMUST00000230726 Rangap1 protein_coding Interval_129546 chr5 120833497 120834327 + 0 NA Intergenic Intergenic -14460 ENSMUSG00000053765.4 ENSMUSG00000053765 ENSMUST00000123431 Oas1f protein_coding Interval_162992 chr9 14304493 14304836 + 0 NA intron (ENSMUSG00000032009.8, intron 1 of 3) protein_coding-intron (ENSMUSG00000032009.8, intron 1 of 9) 29597 ENSMUSG00000032009.8 ENSMUSG00000032009 ENSMUST00000208142 Sesn3 protein_coding Interval_80685 chr18 46305280 46305986 + 0 NA intron (ENSMUSG00000071855.5, intron 1 of 4) protein_coding-intron (ENSMUSG00000071855.5, intron 1 of 9) -14783 ENSMUSG00000071855.5 ENSMUSG00000071855 ENSMUST00000237152 Ccdc112 protein_coding Interval_45509 chr13 55535868 55537055 + 0 NA promoter-TSS (ENSMUSG00000021494.9) protein_coding-promoter-TSS (ENSMUSG00000021494.9) -37 ENSMUSG00000021494.9 ENSMUSG00000021494 ENSMUST00000224125 Ddx41 protein_coding Interval_14330 chr10 30946494 30946746 + 0 NA Intergenic Intergenic -4135 ENSMUSG00000094008.1 ENSMUSG00000094008 ENSMUST00000178825 Gm24168 snRNA Interval_32570 chr11 108687250 108687697 + 0 NA exon (ENSMUSG00000081016.1, exon 1 of 1) unprocessed_pseudogene-exon (ENSMUSG00000081016.1, exon 1 of 1) 562 ENSMUSG00000081016.1 ENSMUSG00000081016 ENSMUST00000121388 Olfr1397-ps1 unprocessed_pseudogene Interval_141905 chr6 135251754 135253445 + 0 NA intron (ENSMUSG00000030206.13, intron 1 of 5) protein_coding-intron (ENSMUSG00000030206.13, intron 1 of 5) 1727 ENSMUSG00000030206.13 ENSMUSG00000030206 ENSMUST00000111910 Gsg1 protein_coding Interval_14916 chr10 41070550 41072416 + 0 NA exon (ENSMUSG00000046922.7, exon 2 of 2) protein_coding-exon (ENSMUSG00000046922.7, exon 2 of 2) 802 ENSMUSG00000046922.7 ENSMUSG00000046922 ENSMUST00000061796 Gpr6 protein_coding Interval_139429 chr6 100109362 100109573 + 0 NA Intergenic Intergenic 34347 ENSMUSG00000107558.1 ENSMUSG00000107558 ENSMUST00000204605 2010109P13Rik TEC Interval_51920 chr14 33938985 33939772 + 0 NA Intergenic Intergenic -1661 ENSMUSG00000072625.1 ENSMUSG00000072625 ENSMUST00000100720 Gdf2 protein_coding Interval_27685 chr11 69469352 69472059 + 0 NA intron (ENSMUSG00000005237.14, intron 39 of 85) protein_coding-intron (ENSMUSG00000005237.14, intron 38 of 84) 22157 ENSMUSG00000086591.1 ENSMUSG00000086591 ENSMUST00000124108 Dnah2os antisense Interval_137472 chr6 72655131 72656628 + 0 NA intron (ENSMUSG00000055799.13, intron 2 of 5) protein_coding-intron (ENSMUSG00000055799.13, intron 3 of 11) 3559 ENSMUSG00000102983.1 ENSMUSG00000102983 ENSMUST00000192767 Gm38320 TEC Interval_59067 chr15 42953344 42953732 + 0 NA Intergenic Intergenic 217288 ENSMUSG00000051920.7 ENSMUSG00000051920 ENSMUST00000226402 Rspo2 protein_coding Interval_129514 chr5 120668647 120668853 + 0 NA intron (ENSMUSG00000029602.11, intron 13 of 20) protein_coding-intron (ENSMUSG00000029602.11, intron 14 of 21) 13329 ENSMUSG00000029603.15 ENSMUSG00000029603 ENSMUST00000124079 Dtx1 protein_coding Interval_156253 chr8 46563822 46564833 + 0 NA intron (ENSMUSG00000031629.14, intron 7 of 13) protein_coding-intron (ENSMUSG00000031629.14, intron 6 of 12) 12289 ENSMUSG00000031629.14 ENSMUSG00000031629 ENSMUST00000136724 Cenpu protein_coding Interval_135082 chr6 35243333 35245531 + 0 NA promoter-TSS (ENSMUSG00000038759.15) protein_coding-promoter-TSS (ENSMUSG00000038759.15) 837 ENSMUSG00000087808.1 ENSMUSG00000087808 ENSMUST00000157183 Gm23435 snRNA Interval_27937 chr11 71003780 71004905 + 0 NA promoter-TSS (ENSMUSG00000040620.15) protein_coding-promoter-TSS (ENSMUSG00000040620.15) -7698 ENSMUSG00000065246.1 ENSMUSG00000065246 ENSMUST00000083312 Gm22297 snRNA Interval_100499 chr2 169671500 169671880 + 0 NA intron (ENSMUSG00000047907.11, intron 1 of 2) protein_coding-intron (ENSMUSG00000047907.11, intron 1 of 1) -43372 ENSMUSG00000103662.1 ENSMUSG00000103662 ENSMUST00000191912 Gm34294 TEC Interval_48755 chr13 102810928 102811623 + 0 NA intron (ENSMUSG00000034751.17, intron 4 of 27) protein_coding-intron (ENSMUSG00000034751.17, intron 3 of 27) 48840 ENSMUSG00000090329.1 ENSMUSG00000090329 ENSMUST00000170645 Gm17160 antisense Interval_158795 chr8 86717661 86718154 + 0 NA intron (ENSMUSG00000047866.18, intron 12 of 12) protein_coding-intron (ENSMUSG00000047866.18, intron 12 of 12) -27546 ENSMUSG00000074178.3 ENSMUSG00000074178 ENSMUST00000098532 Gm10638 antisense Interval_140637 chr6 120254709 120255858 + 0 NA intron (ENSMUSG00000041372.10, intron 1 of 19) protein_coding-intron (ENSMUSG00000041372.10, intron 1 of 19) 39276 ENSMUSG00000041372.10 ENSMUSG00000041372 ENSMUST00000212457 B4galnt3 protein_coding Interval_121730 chr5 5890825 5890999 + 0 NA Intergenic Intergenic 92715 ENSMUSG00000104952.1 ENSMUSG00000104952 ENSMUST00000198061 Gm38697 processed_pseudogene Interval_172593 chrX 37172974 37173277 + 0 NA Intergenic Intergenic -4283 ENSMUSG00000036551.6 ENSMUSG00000036551 ENSMUST00000046557 Akap14 protein_coding Interval_10303 chr1 168341582 168342479 + 0 NA intron (ENSMUSG00000052534.15, intron 2 of 7) protein_coding-intron (ENSMUSG00000052534.15, intron 2 of 6) -4359 ENSMUSG00000103780.1 ENSMUSG00000103780 ENSMUST00000192272 Gm37524 TEC Interval_95198 chr2 104711538 104712666 + 0 NA promoter-TSS (ENSMUSG00000027175.10) protein_coding-promoter-TSS (ENSMUSG00000027175.10) 4277 ENSMUSG00000074997.3 ENSMUSG00000074997 ENSMUST00000099659 Pin1rt1 protein_coding Interval_58560 chr15 36126314 36128918 + 0 NA intron (ENSMUSG00000037627.16, intron 2 of 27) protein_coding-intron (ENSMUSG00000037627.16, intron 2 of 27) -6690 ENSMUSG00000092230.1 ENSMUSG00000092230 ENSMUST00000174284 Gm18889 processed_pseudogene Interval_8877 chr1 151728663 151729125 + 0 NA Intergenic Intergenic 26124 ENSMUSG00000100594.1 ENSMUSG00000100594 ENSMUST00000186444 2810414N06Rik lincRNA Interval_164784 chr9 41823144 41823664 + 0 NA intron (ENSMUSG00000110981.1, intron 2 of 2) processed_transcript-intron (ENSMUSG00000110981.1, intron 3 of 4) -17721 ENSMUSG00000111511.1 ENSMUSG00000111511 ENSMUST00000213182 AC160966.1 processed_transcript Interval_132794 chr5 147915036 147915378 + 0 NA Intergenic Intergenic -35338 ENSMUSG00000029650.10 ENSMUSG00000029650 ENSMUST00000138244 Slc46a3 protein_coding Interval_46457 chr13 66313870 66314220 + 0 NA intron (ENSMUSG00000114616.1, intron 2 of 2) lincRNA-intron (ENSMUSG00000114616.1, intron 2 of 2) -4749 ENSMUSG00000114776.1 ENSMUSG00000114776 ENSMUST00000224087 Gm18260 processed_pseudogene Interval_6618 chr1 118343274 118344698 + 0 NA Intergenic Intergenic -13326 ENSMUSG00000099936.1 ENSMUSG00000099936 ENSMUST00000190194 Gm28867 lincRNA Interval_38759 chr12 81977338 81977595 + 0 NA intron (ENSMUSG00000021140.9, intron 23 of 34) protein_coding-intron (ENSMUSG00000021140.9, intron 24 of 35) 4279 ENSMUSG00000021140.9 ENSMUSG00000021140 ENSMUST00000222468 Pcnx protein_coding Interval_122870 chr5 26535683 26536058 + 0 NA Intergenic Intergenic -42581 ENSMUSG00000029044.9 ENSMUSG00000029044 ENSMUST00000196508 4930584F24Rik lincRNA Interval_124073 chr5 38062669 38063334 + 0 NA intron (ENSMUSG00000029125.14, intron 1 of 3) protein_coding-intron (ENSMUSG00000029125.14, intron 1 of 10) 23719 ENSMUSG00000029125.14 ENSMUSG00000029125 ENSMUST00000141286 Stx18 protein_coding Interval_41429 chr12 113826141 113827240 + 0 NA TTS (ENSMUSG00000094134.2) IG_V_gene-TTS (ENSMUSG00000094134.2) 439 ENSMUSG00000094134.2 ENSMUSG00000094134 ENSMUST00000192877 Ighv5-15 IG_V_gene Interval_131760 chr5 139717408 139718144 + 0 NA intron (ENSMUSG00000036718.17, intron 4 of 16) protein_coding-intron (ENSMUSG00000036718.17, intron 4 of 16) 15058 ENSMUSG00000036718.17 ENSMUSG00000036718 ENSMUST00000165645 Micall2 protein_coding Interval_168304 chr9 78540150 78540668 + 0 NA intron (ENSMUSG00000049624.14, intron 10 of 10) protein_coding-intron (ENSMUSG00000049624.14, intron 10 of 10) 19863 ENSMUSG00000111417.1 ENSMUSG00000111417 ENSMUST00000214586 Gm47430 lincRNA Interval_152740 chr7 137079835 137080684 + 0 NA intron (ENSMUSG00000054612.4, intron 2 of 4) protein_coding-intron (ENSMUSG00000054612.4, intron 2 of 4) -87561 ENSMUSG00000110174.1 ENSMUSG00000110174 ENSMUST00000211656 Gm45499 processed_pseudogene Interval_42481 chr13 14013895 14014172 + 0 NA TTS (ENSMUSG00000039233.12) protein_coding-TTS (ENSMUSG00000039233.12) -4530 ENSMUSG00000039233.12 ENSMUSG00000039233 ENSMUST00000160776 Tbce protein_coding Interval_159195 chr8 91562100 91562759 + 0 NA intron (ENSMUSG00000055932.15, intron 5 of 5) protein_coding-intron (ENSMUSG00000055932.15, intron 8 of 8) -16859 ENSMUSG00000110068.1 ENSMUSG00000110068 ENSMUST00000210685 Gm45294 TEC Interval_138279 chr6 86827449 86827717 + 0 NA Intergenic Intergenic 21857 ENSMUSG00000100164.1 ENSMUSG00000100164 ENSMUST00000185414 2610306M01Rik bidirectional_promoter_lncRNA Interval_65985 chr16 30717540 30718976 + 0 NA Intergenic Intergenic 74997 ENSMUSG00000116570.1 ENSMUSG00000116570 ENSMUST00000231445 Gm49754 lincRNA Interval_118004 chr4 127811940 127812398 + 0 NA promoter-TSS (ENSMUSG00000087510.1) lincRNA-promoter-TSS (ENSMUSG00000087510.1) 4 ENSMUSG00000087510.1 ENSMUSG00000087510 ENSMUST00000141892 1700112K13Rik lincRNA Interval_66102 chr16 31617822 31618317 + 0 NA promoter-TSS (ENSMUSG00000116597.1) lincRNA-promoter-TSS (ENSMUSG00000116597.1) 334 ENSMUSG00000116597.1 ENSMUSG00000116597 ENSMUST00000232209 Gm536 lincRNA Interval_89592 chr2 23092220 23093003 + 0 NA intron (ENSMUSG00000026781.17, intron 7 of 11) protein_coding-intron (ENSMUSG00000026781.17, intron 8 of 12) 23539 ENSMUSG00000026781.17 ENSMUSG00000026781 ENSMUST00000227612 Acbd5 protein_coding Interval_140731 chr6 120907485 120908864 + 0 NA promoter-TSS (ENSMUSG00000108125.1) processed_pseudogene-promoter-TSS (ENSMUSG00000108125.1) -499 ENSMUSG00000108125.1 ENSMUSG00000108125 ENSMUST00000204935 Gm17812 processed_pseudogene Interval_161833 chr8 123100286 123100824 + 0 NA intron (ENSMUSG00000092329.1, intron 1 of 15) protein_coding-intron (ENSMUSG00000092329.1, intron 1 of 15) -2483 ENSMUSG00000064450.1 ENSMUSG00000064450 ENSMUST00000082516 Snord68 snoRNA Interval_153856 chr8 9977440 9978273 + 0 NA promoter-TSS (ENSMUSG00000049717.9) protein_coding-promoter-TSS (ENSMUSG00000049717.9) 149 ENSMUSG00000040396.12 ENSMUSG00000040396 ENSMUST00000048216 Abhd13 protein_coding Interval_116962 chr4 118478647 118479018 + 0 NA intron (ENSMUSG00000033191.14, intron 12 of 21) protein_coding-intron (ENSMUSG00000033191.14, intron 13 of 22) 10923 ENSMUSG00000033191.14 ENSMUSG00000033191 ENSMUST00000153286 Tie1 protein_coding Interval_66046 chr16 31182153 31182362 + 0 NA intron (ENSMUSG00000049076.12, intron 1 of 23) protein_coding-intron (ENSMUSG00000049076.12, intron 1 of 21) 24387 ENSMUSG00000116943.1 ENSMUSG00000116943 ENSMUST00000231868 Gm18237 processed_pseudogene Interval_123982 chr5 37001921 37002666 + 0 NA Intergenic Intergenic -25337 ENSMUSG00000039474.13 ENSMUSG00000039474 ENSMUST00000167937 Wfs1 protein_coding Interval_67146 chr16 43908503 43909316 + 0 NA TTS (ENSMUSG00000022701.18) protein_coding-TTS (ENSMUSG00000022701.18) 19109 ENSMUSG00000022701.18 ENSMUSG00000022701 ENSMUST00000122440 Ccdc191 protein_coding Interval_120001 chr4 141311875 141312604 + 0 NA intron (ENSMUSG00000006445.3, intron 3 of 16) protein_coding-intron (ENSMUSG00000006445.3, intron 3 of 16) -4674 ENSMUSG00000006445.3 ENSMUSG00000006445 ENSMUST00000149002 Epha2 protein_coding Interval_86911 chr19 44797297 44798079 + 0 NA intron (ENSMUSG00000004231.15, intron 6 of 10) protein_coding-intron (ENSMUSG00000004231.15, intron 6 of 10) -10718 ENSMUSG00000098952.1 ENSMUSG00000098952 ENSMUST00000184584 Mir6405 miRNA Interval_169654 chr9 99763481 99764554 + 0 NA Intergenic Intergenic -13500 ENSMUSG00000077215.1 ENSMUSG00000077215 ENSMUST00000104027 Gm23949 snoRNA Interval_18590 chr10 88245198 88245411 + 0 NA intron (ENSMUSG00000020056.16, intron 1 of 1) protein_coding-intron (ENSMUSG00000020056.16, intron 6 of 6) 27927 ENSMUSG00000112259.1 ENSMUSG00000112259 ENSMUST00000217977 Gm17980 processed_pseudogene Interval_82597 chr18 75368774 75369447 + 0 NA promoter-TSS (ENSMUSG00000025880.11) protein_coding-promoter-TSS (ENSMUSG00000025880.11) 120 ENSMUSG00000025880.11 ENSMUSG00000025880 ENSMUST00000172718 Smad7 protein_coding Interval_26240 chr11 55373250 55374118 + 0 NA Intergenic Intergenic 46641 ENSMUSG00000018593.13 ENSMUSG00000018593 ENSMUST00000125787 Sparc protein_coding Interval_45936 chr13 59450900 59452349 + 0 NA TTS (ENSMUSG00000021557.15) protein_coding-TTS (ENSMUSG00000021557.15) 13664 ENSMUSG00000021557.15 ENSMUSG00000021557 ENSMUST00000163284 Agtpbp1 protein_coding Interval_57231 chr15 8015134 8015352 + 0 NA intron (ENSMUSG00000039828.7, intron 9 of 17) protein_coding-intron (ENSMUSG00000039828.7, intron 9 of 17) 39915 ENSMUSG00000098281.1 ENSMUSG00000098281 ENSMUST00000184975 Gm27529 miRNA Interval_106964 chr3 102220960 102222127 + 0 NA Intergenic Intergenic -17580 ENSMUSG00000027860.15 ENSMUSG00000027860 ENSMUST00000161722 Vangl1 protein_coding Interval_73169 chr17 35234932 35236695 + 0 NA promoter-TSS (ENSMUSG00000042419.8) protein_coding-promoter-TSS (ENSMUSG00000042419.8) 2153 ENSMUSG00000024403.16 ENSMUSG00000024403 ENSMUST00000142415 Atp6v1g2 protein_coding Interval_40795 chr12 108469021 108469536 + 0 NA intron (ENSMUSG00000058070.14, intron 2 of 6) protein_coding-intron (ENSMUSG00000058070.14, intron 2 of 21) -2575 ENSMUSG00000058070.14 ENSMUSG00000058070 ENSMUST00000123035 Eml1 protein_coding Interval_130594 chr5 129081443 129082015 + 0 NA Intergenic Intergenic -15028 ENSMUSG00000044017.16 ENSMUSG00000044017 ENSMUST00000156437 Adgrd1 protein_coding Interval_117290 chr4 122746571 122747365 + 0 NA Intergenic Intergenic -12235 ENSMUSG00000084082.1 ENSMUSG00000084082 ENSMUST00000121835 Gm12872 unprocessed_pseudogene Interval_84616 chr19 14464908 14465128 + 0 NA intron (ENSMUSG00000024642.17, intron 12 of 19) protein_coding-intron (ENSMUSG00000024642.17, intron 12 of 19) 130521 ENSMUSG00000024642.17 ENSMUSG00000024642 ENSMUST00000235975 Tle4 protein_coding Interval_169850 chr9 102490944 102491250 + 0 NA Intergenic Intergenic 4307 ENSMUSG00000111859.1 ENSMUSG00000111859 ENSMUST00000213941 Gm47983 TEC Interval_10900 chr1 176753934 176754501 + 0 NA promoter-TSS (ENSMUSG00000104154.1) TEC-promoter-TSS (ENSMUSG00000104154.1) -300 ENSMUSG00000103435.1 ENSMUSG00000103435 ENSMUST00000195463 Gm36992 antisense Interval_38840 chr12 83299206 83299459 + 0 NA intron (ENSMUSG00000021221.15, intron 6 of 10) protein_coding-intron (ENSMUSG00000021221.15, intron 4 of 6) 177118 ENSMUSG00000103387.1 ENSMUSG00000103387 ENSMUST00000192978 1700030I03Rik TEC Interval_3130 chr1 53802889 53803174 + 0 NA Intergenic Intergenic 11830 ENSMUSG00000102405.1 ENSMUSG00000102405 ENSMUST00000194911 Gm37863 TEC Interval_106061 chr3 92113141 92113377 + 0 NA promoter-TSS (ENSMUSG00000106143.1) antisense-promoter-TSS (ENSMUSG00000106143.1) 67 ENSMUSG00000106143.1 ENSMUSG00000106143 ENSMUST00000198245 Gm43735 antisense Interval_35929 chr12 32080497 32081135 + 0 NA promoter-TSS (ENSMUSG00000112569.1) lincRNA-promoter-TSS (ENSMUSG00000112569.1) 34 ENSMUSG00000112569.1 ENSMUSG00000112569 ENSMUST00000219617 Gm33111 lincRNA Interval_3860 chr1 63854790 63855004 + 0 NA Intergenic Intergenic -9319 ENSMUSG00000080817.1 ENSMUSG00000080817 ENSMUST00000120280 Gm13751 processed_pseudogene Interval_98139 chr2 148700158 148700401 + 0 NA intron (ENSMUSG00000027438.14, intron 7 of 9) protein_coding-intron (ENSMUSG00000027438.14, intron 8 of 10) 15667 ENSMUSG00000027439.9 ENSMUSG00000027439 ENSMUST00000151362 Gzf1 protein_coding Interval_8858 chr1 151590893 151591882 + 0 NA intron (ENSMUSG00000026483.13, intron 1 of 13) protein_coding-intron (ENSMUSG00000026483.13, intron 1 of 14) 20014 ENSMUSG00000026483.13 ENSMUSG00000026483 ENSMUST00000086267 Fam129a protein_coding Interval_11433 chr1 181916435 181916638 + 0 NA intron (ENSMUSG00000022995.16, intron 1 of 4) protein_coding-intron (ENSMUSG00000022995.16, intron 11 of 14) 36839 ENSMUSG00000103722.1 ENSMUSG00000103722 ENSMUST00000194331 2700078F05Rik TEC Interval_35538 chr12 24614470 24615656 + 0 NA intron (ENSMUSG00000020656.16, intron 13 of 13) protein_coding-intron (ENSMUSG00000020656.16, intron 13 of 13) 23947 ENSMUSG00000066553.5 ENSMUSG00000066553 ENSMUST00000140065 Gm6969 processed_pseudogene Interval_23361 chr11 21874225 21875653 + 0 NA intron (ENSMUSG00000020319.9, intron 15 of 17) protein_coding-intron (ENSMUSG00000020319.9, intron 15 of 17) 3011 ENSMUSG00000084004.1 ENSMUSG00000084004 ENSMUST00000117561 Gm12047 processed_pseudogene Interval_130350 chr5 126448076 126448840 + 0 NA promoter-TSS (ENSMUSG00000104175.1) TEC-promoter-TSS (ENSMUSG00000104175.1) 0 ENSMUSG00000104175.1 ENSMUSG00000104175 ENSMUST00000192617 Gm37700 TEC Interval_81533 chr18 61522510 61522777 + 0 NA exon (ENSMUSG00000045094.8, exon 3 of 13) protein_coding-exon (ENSMUSG00000045094.8, exon 3 of 13) 13932 ENSMUSG00000045094.8 ENSMUSG00000045094 ENSMUST00000237557 Arhgef37 protein_coding Interval_98095 chr2 148029335 148030779 + 0 NA intron (ENSMUSG00000086141.7, intron 1 of 4) lincRNA-intron (ENSMUSG00000086141.7, intron 1 of 4) 10146 ENSMUSG00000086141.7 ENSMUSG00000086141 ENSMUST00000132070 9030622O22Rik lincRNA Interval_7664 chr1 132909379 132910386 + 0 NA intron (ENSMUSG00000026443.3, intron 1 of 1) protein_coding-intron (ENSMUSG00000026443.3, intron 1 of 1) 13862 ENSMUSG00000106377.1 ENSMUSG00000106377 ENSMUST00000196792 Gm44300 miRNA Interval_45381 chr13 54788863 54790184 + 0 NA promoter-TSS (ENSMUSG00000025875.14) protein_coding-promoter-TSS (ENSMUSG00000025875.14) -122 ENSMUSG00000025875.14 ENSMUSG00000025875 ENSMUST00000139574 Tspan17 protein_coding Interval_164984 chr9 43633922 43634515 + 0 NA Intergenic Intergenic 10939 ENSMUSG00000111400.1 ENSMUSG00000111400 ENSMUST00000214692 Gm29961 lincRNA Interval_34472 chr12 4506782 4507660 + 0 NA Intergenic Intergenic -2096 ENSMUSG00000111938.1 ENSMUSG00000111938 ENSMUST00000218374 2900045O20Rik lincRNA Interval_127992 chr5 110121714 110123282 + 0 NA intron (ENSMUSG00000023284.15, intron 3 of 5) protein_coding-intron (ENSMUSG00000023284.15, intron 1 of 3) -3649 ENSMUSG00000081865.1 ENSMUSG00000081865 ENSMUST00000118871 Gm15484 processed_pseudogene Interval_164974 chr9 43545019 43545773 + 0 NA Intergenic Intergenic -29564 ENSMUSG00000111110.1 ENSMUSG00000111110 ENSMUST00000216439 Gm36855 lincRNA Interval_165103 chr9 44588776 44589316 + 0 NA Intergenic Intergenic 8972 ENSMUSG00000110721.1 ENSMUSG00000110721 ENSMUST00000217329 Gm47231 lincRNA Interval_76136 chr17 75398867 75399630 + 0 NA Intergenic Intergenic -36648 ENSMUSG00000071042.12 ENSMUSG00000071042 ENSMUST00000234011 Rasgrp3 protein_coding Interval_4968 chr1 83058652 83059295 + 0 NA exon (ENSMUSG00000104423.1, exon 1 of 1) protein_coding-exon (ENSMUSG00000104423.1, exon 1 of 1) 405 ENSMUSG00000104423.1 ENSMUSG00000104423 ENSMUST00000193762 A030005K14Rik protein_coding Interval_28407 chr11 75695149 75695468 + 0 NA intron (ENSMUSG00000017776.15, intron 2 of 2) protein_coding-intron (ENSMUSG00000017776.15, intron 2 of 2) 15766 ENSMUSG00000017776.15 ENSMUSG00000017776 ENSMUST00000147718 Crk protein_coding Interval_69286 chr16 91923280 91925457 + 0 NA promoter-TSS (ENSMUSG00000087240.1) antisense-promoter-TSS (ENSMUSG00000087240.1) -70 ENSMUSG00000087240.1 ENSMUSG00000087240 ENSMUST00000129701 Gm15976 antisense Interval_31549 chr11 101307467 101308402 + 0 NA TTS (ENSMUSG00000084152.1) processed_pseudogene-TTS (ENSMUSG00000084152.1) 1192 ENSMUSG00000084152.1 ENSMUSG00000084152 ENSMUST00000119609 Gm11617 processed_pseudogene Interval_39829 chr12 98792091 98792604 + 0 NA TTS (ENSMUSG00000051166.10) protein_coding-TTS (ENSMUSG00000051166.10) -2101 ENSMUSG00000113852.1 ENSMUSG00000113852 ENSMUST00000221902 Gm48062 TEC Interval_107872 chr3 116480603 116481437 + 0 NA Intergenic Intergenic 14401 ENSMUSG00000088840.1 ENSMUSG00000088840 ENSMUST00000158215 Gm26358 snoRNA Interval_79742 chr18 34833429 34834705 + 0 NA intron (ENSMUSG00000038773.11, intron 21 of 22) protein_coding-intron (ENSMUSG00000038773.11, intron 22 of 23) -6522 ENSMUSG00000038555.7 ENSMUSG00000038555 ENSMUST00000043484 Reep2 protein_coding Interval_151449 chr7 122596851 122597304 + 0 NA TTS (ENSMUSG00000052889.11) protein_coding-TTS (ENSMUSG00000052889.11) 6142 ENSMUSG00000108341.1 ENSMUSG00000108341 ENSMUST00000205565 Gm44746 TEC Interval_27235 chr11 64544597 64545365 + 0 NA Intergenic Intergenic 45659 ENSMUSG00000080430.1 ENSMUSG00000080430 ENSMUST00000116780 Gm24275 miRNA Interval_103566 chr3 49769379 49769796 + 0 NA Intergenic Intergenic 11300 ENSMUSG00000102943.1 ENSMUSG00000102943 ENSMUST00000193230 Gm37550 processed_pseudogene Interval_115234 chr4 94688742 94688938 + 0 NA intron (ENSMUSG00000028576.12, intron 18 of 19) protein_coding-intron (ENSMUSG00000028576.12, intron 18 of 19) 9660 ENSMUSG00000028576.12 ENSMUSG00000028576 ENSMUST00000152289 Ift74 protein_coding Interval_168113 chr9 77047970 77048262 + 0 NA intron (ENSMUSG00000098370.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000098370.1, intron 1 of 1) 1434 ENSMUSG00000098370.1 ENSMUSG00000098370 ENSMUST00000184488 Gm19541 lincRNA Interval_59025 chr15 41818166 41819397 + 0 NA intron (ENSMUSG00000022307.16, intron 6 of 8) protein_coding-intron (ENSMUSG00000022307.16, intron 6 of 14) -12212 ENSMUSG00000022307.16 ENSMUSG00000022307 ENSMUST00000230126 Oxr1 protein_coding Interval_46792 chr13 70586796 70587717 + 0 NA intron (ENSMUSG00000034525.7, intron 4 of 5) protein_coding-intron (ENSMUSG00000034525.7, intron 4 of 5) 8997 ENSMUSG00000034525.7 ENSMUSG00000034525 ENSMUST00000222568 Ice1 protein_coding Interval_164534 chr9 37887445 37888040 + 0 NA Intergenic Intergenic -8982 ENSMUSG00000066748.4 ENSMUSG00000066748 ENSMUST00000213688 Olfr145 protein_coding Interval_162732 chr9 8117976 8118203 + 0 NA intron (ENSMUSG00000040729.8, intron 3 of 11) protein_coding-intron (ENSMUSG00000040729.8, intron 3 of 10) 16205 ENSMUSG00000040729.8 ENSMUSG00000040729 ENSMUST00000214150 Cep126 protein_coding Interval_110744 chr4 7942419 7942870 + 0 NA Intergenic Intergenic 121728 ENSMUSG00000094771.1 ENSMUSG00000094771 ENSMUST00000179446 Gm23860 snoRNA Interval_46696 chr13 69417619 69418913 + 0 NA Intergenic Intergenic -16869 ENSMUSG00000106556.1 ENSMUSG00000106556 ENSMUST00000196657 Gm44375 miRNA Interval_15990 chr10 59964464 59965265 + 0 NA Intergenic Intergenic -13030 ENSMUSG00000020108.4 ENSMUSG00000020108 ENSMUST00000020308 Ddit4 protein_coding Interval_115539 chr4 100411918 100412504 + 0 NA intron (ENSMUSG00000035305.5, intron 7 of 8) protein_coding-intron (ENSMUSG00000035305.5, intron 7 of 8) -50152 ENSMUSG00000080967.1 ENSMUSG00000080967 ENSMUST00000121588 Gm12706 processed_pseudogene Interval_102717 chr3 30562543 30563054 + 0 NA promoter-TSS (ENSMUSG00000104243.1) processed_pseudogene-promoter-TSS (ENSMUSG00000104243.1) -669 ENSMUSG00000104243.1 ENSMUSG00000104243 ENSMUST00000195484 Gm38153 processed_pseudogene Interval_94540 chr2 92034391 92034711 + 0 NA Intergenic Intergenic -10049 ENSMUSG00000027230.9 ENSMUSG00000027230 ENSMUST00000028663 Creb3l1 protein_coding Interval_151472 chr7 122921456 122922758 + 0 NA Intergenic Intergenic 47943 ENSMUSG00000108452.1 ENSMUSG00000108452 ENSMUST00000205998 4930413G21Rik TEC Interval_83078 chr18 81099206 81099601 + 0 NA Intergenic Intergenic 16339 ENSMUSG00000118262.1 ENSMUSG00000118262 ENSMUST00000237649 Gm50423 lincRNA Interval_25250 chr11 45889877 45890165 + 0 NA intron (ENSMUSG00000006169.20, intron 4 of 7) protein_coding-intron (ENSMUSG00000006169.20, intron 5 of 11) 7624 ENSMUSG00000006169.20 ENSMUSG00000006169 ENSMUST00000133715 Clint1 protein_coding Interval_32265 chr11 106603204 106603499 + 0 NA intron (ENSMUSG00000040548.16, intron 1 of 1) protein_coding-intron (ENSMUSG00000040548.16, intron 1 of 11) -36241 ENSMUSG00000040548.16 ENSMUSG00000040548 ENSMUST00000153870 Tex2 protein_coding Interval_162494 chr9 3340175 3340374 + 0 NA intron (ENSMUSG00000025899.14, intron 2 of 7) protein_coding-intron (ENSMUSG00000025899.14, intron 2 of 11) -12383 ENSMUSG00000064956.1 ENSMUSG00000064956 ENSMUST00000083022 Gm24918 snoRNA Interval_174529 chrX 156837951 156838438 + 0 NA Intergenic Intergenic 49988 ENSMUSG00000084246.1 ENSMUSG00000084246 ENSMUST00000119325 Gm15162 processed_pseudogene Interval_96572 chr2 125823815 125825300 + 0 NA Intergenic Intergenic 34506 ENSMUSG00000027206.13 ENSMUSG00000027206 ENSMUST00000152683 Cops2 protein_coding Interval_72837 chr17 32481603 32482284 + 0 NA intron (ENSMUSG00000061126.5, intron 6 of 13) protein_coding-intron (ENSMUSG00000061126.5, intron 4 of 11) -24107 ENSMUSG00000091586.2 ENSMUSG00000091586 ENSMUST00000236129 Cyp4f17 protein_coding Interval_64904 chr16 17102767 17103746 + 0 NA intron (ENSMUSG00000022771.17, intron 1 of 8) protein_coding-intron (ENSMUSG00000022771.17, intron 5 of 20) 7980 ENSMUSG00000022771.17 ENSMUSG00000022771 ENSMUST00000231536 Ppil2 protein_coding Interval_78676 chr18 16763218 16763594 + 0 NA intron (ENSMUSG00000024304.14, intron 2 of 15) protein_coding-intron (ENSMUSG00000024304.14, intron 2 of 15) 34673 ENSMUSG00000085575.1 ENSMUSG00000085575 ENSMUST00000149095 Gm15485 antisense Interval_75730 chr17 70915647 70916192 + 0 NA intron (ENSMUSG00000097154.2, intron 1 of 2) lincRNA-intron (ENSMUSG00000097154.2, intron 1 of 2) 10613 ENSMUSG00000117156.1 ENSMUSG00000117156 ENSMUST00000233140 Gm49904 processed_pseudogene Interval_84034 chr19 6865848 6866884 + 0 NA Intergenic Intergenic -18013 ENSMUSG00000047810.9 ENSMUSG00000047810 ENSMUST00000237252 Ccdc88b protein_coding Interval_121816 chr5 8453938 8454284 + 0 NA exon (ENSMUSG00000054099.11, exon 12 of 12) protein_coding-exon (ENSMUSG00000054099.11, exon 12 of 12) 31253 ENSMUSG00000054099.11 ENSMUSG00000054099 ENSMUST00000198119 Slc25a40 protein_coding Interval_62044 chr15 86071365 86072002 + 0 NA intron (ENSMUSG00000035900.18, intron 1 of 4) protein_coding-intron (ENSMUSG00000035900.18, intron 1 of 18) -3050 ENSMUSG00000035900.18 ENSMUSG00000035900 ENSMUST00000147286 Gramd4 protein_coding Interval_94813 chr2 94622506 94622793 + 0 NA TTS (ENSMUSG00000077678.1) snoRNA-TTS (ENSMUSG00000077678.1) 691 ENSMUSG00000077678.1 ENSMUSG00000077678 ENSMUST00000104490 Gm24318 snoRNA Interval_80553 chr18 43983138 43983653 + 0 NA intron (ENSMUSG00000055561.9, intron 7 of 31) protein_coding-intron (ENSMUSG00000055561.9, intron 7 of 31) 20160 ENSMUSG00000055561.9 ENSMUSG00000055561 ENSMUST00000069245 Spink5 protein_coding Interval_102068 chr3 16411595 16412035 + 0 NA Intergenic Intergenic 228579 ENSMUSG00000047213.14 ENSMUSG00000047213 ENSMUST00000108346 Ythdf3 protein_coding Interval_25670 chr11 50621556 50623465 + 0 NA intron (ENSMUSG00000036545.9, intron 2 of 20) protein_coding-intron (ENSMUSG00000036545.9, intron 2 of 21) -20062 ENSMUSG00000085564.1 ENSMUSG00000085564 ENSMUST00000154068 Gm12198 processed_transcript Interval_173972 chrX 119621557 119622251 + 0 NA Intergenic Intergenic -95245 ENSMUSG00000088313.1 ENSMUSG00000088313 ENSMUST00000157688 Gm26182 snoRNA Interval_34444 chr12 4206194 4206424 + 0 NA intron (ENSMUSG00000020654.15, intron 13 of 20) protein_coding-intron (ENSMUSG00000020654.15, intron 12 of 20) 10197 ENSMUSG00000020652.17 ENSMUSG00000020652 ENSMUST00000126017 Cenpo protein_coding Interval_65379 chr16 22015265 22016841 + 0 NA intron (ENSMUSG00000022855.9, intron 3 of 15) protein_coding-intron (ENSMUSG00000022855.9, intron 3 of 16) 6492 ENSMUSG00000022855.9 ENSMUSG00000022855 ENSMUST00000232263 Senp2 protein_coding Interval_159169 chr8 91347362 91347609 + 0 NA intron (ENSMUSG00000055932.15, intron 1 of 6) protein_coding-intron (ENSMUSG00000055932.15, intron 1 of 8) 33871 ENSMUSG00000055932.15 ENSMUSG00000055932 ENSMUST00000140276 Fto protein_coding Interval_165278 chr9 45983880 45985451 + 0 NA promoter-TSS (ENSMUSG00000003131.7) protein_coding-promoter-TSS (ENSMUSG00000003131.7) 118 ENSMUSG00000003131.7 ENSMUSG00000003131 ENSMUST00000214996 Pafah1b2 protein_coding Interval_79616 chr18 34027896 34029540 + 0 NA Intergenic Intergenic -4438 ENSMUSG00000088501.1 ENSMUSG00000088501 ENSMUST00000157876 Gm22788 snRNA Interval_168481 chr9 82037222 82038165 + 0 NA intron (ENSMUSG00000043289.12, intron 4 of 4) protein_coding-intron (ENSMUSG00000043289.12, intron 4 of 4) 9113 ENSMUSG00000103536.1 ENSMUSG00000103536 ENSMUST00000191743 Gm37837 TEC Interval_97312 chr2 133585921 133586564 + 0 NA Intergenic Intergenic -1821 ENSMUSG00000064983.1 ENSMUSG00000064983 ENSMUST00000083049 Gm25258 snRNA Interval_119138 chr4 135801254 135802131 + 0 NA intron (ENSMUSG00000037139.15, intron 3 of 12) protein_coding-intron (ENSMUSG00000037139.15, intron 27 of 36) 3502 ENSMUSG00000037139.15 ENSMUSG00000037139 ENSMUST00000142177 Myom3 protein_coding Interval_122639 chr5 24389211 24389680 + 0 NA intron (ENSMUSG00000038295.14, intron 5 of 13) protein_coding-intron (ENSMUSG00000038295.14, intron 5 of 13) 1190 ENSMUSG00000038295.14 ENSMUSG00000038295 ENSMUST00000128831 Atg9b protein_coding Interval_20390 chr10 117273994 117274277 + 0 NA Intergenic Intergenic 8186 ENSMUSG00000069516.8 ENSMUSG00000069516 ENSMUST00000092163 Lyz2 protein_coding Interval_24569 chr11 34539431 34540142 + 0 NA intron (ENSMUSG00000020143.15, intron 22 of 26) protein_coding-intron (ENSMUSG00000020143.15, intron 22 of 51) 225028 ENSMUSG00000069911.11 ENSMUSG00000069911 ENSMUST00000093192 Insyn2b protein_coding Interval_64935 chr16 17354698 17355600 + 0 NA intron (ENSMUSG00000041720.14, intron 14 of 54) protein_coding-intron (ENSMUSG00000041720.14, intron 14 of 54) -13137 ENSMUSG00000065331.1 ENSMUSG00000065331 ENSMUST00000083397 Gm24927 snRNA Interval_92040 chr2 52811912 52812667 + 0 NA Intergenic Intergenic -45571 ENSMUSG00000036053.17 ENSMUSG00000036053 ENSMUST00000050719 Fmnl2 protein_coding Interval_150875 chr7 116120100 116121418 + 0 NA Intergenic Intergenic 8766 ENSMUSG00000045659.18 ENSMUSG00000045659 ENSMUST00000205446 Plekha7 protein_coding Interval_128749 chr5 115061650 115062325 + 0 NA TTS (ENSMUSG00000029550.11) protein_coding-TTS (ENSMUSG00000029550.11) -8147 ENSMUSG00000086167.3 ENSMUSG00000086167 ENSMUST00000148801 Gm13827 processed_pseudogene Interval_134918 chr6 33577253 33577652 + 0 NA intron (ENSMUSG00000029763.17, intron 9 of 12) protein_coding-intron (ENSMUSG00000029763.17, intron 9 of 17) 114702 ENSMUSG00000107103.1 ENSMUSG00000107103 ENSMUST00000202529 Gm43164 TEC Interval_32530 chr11 108193244 108193459 + 0 NA intron (ENSMUSG00000050965.14, intron 2 of 2) protein_coding-intron (ENSMUSG00000050965.14, intron 2 of 16) 11501 ENSMUSG00000084978.1 ENSMUSG00000084978 ENSMUST00000153899 Gm11655 antisense Interval_145409 chr7 34546314 34547266 + 0 NA promoter-TSS (ENSMUSG00000086631.2) lincRNA-promoter-TSS (ENSMUSG00000086631.2) -416 ENSMUSG00000086631.2 ENSMUSG00000086631 ENSMUST00000206001 Gm12784 lincRNA Interval_45707 chr13 57119217 57119859 + 0 NA Intergenic Intergenic -120309 ENSMUSG00000114363.1 ENSMUSG00000114363 ENSMUST00000225562 Gm48174 processed_pseudogene Interval_107933 chr3 116968434 116969265 + 0 NA promoter-TSS (ENSMUSG00000033377.14) protein_coding-promoter-TSS (ENSMUSG00000033377.14) -106 ENSMUSG00000033377.14 ENSMUSG00000033377 ENSMUST00000197659 Palmd protein_coding Interval_97758 chr2 143881089 143881565 + 0 NA exon (ENSMUSG00000080711.3, exon 1 of 1) processed_pseudogene-exon (ENSMUSG00000080711.3, exon 1 of 1) 150 ENSMUSG00000080711.3 ENSMUSG00000080711 ENSMUST00000122397 Gm11686 processed_pseudogene Interval_92762 chr2 65214332 65214526 + 0 NA intron (ENSMUSG00000034903.18, intron 1 of 2) protein_coding-intron (ENSMUSG00000034903.18, intron 1 of 12) -24327 ENSMUSG00000086881.1 ENSMUSG00000086881 ENSMUST00000137582 Gm13594 antisense Interval_36024 chr12 33379582 33380650 + 0 NA intron (ENSMUSG00000085664.1, intron 2 of 3) antisense-intron (ENSMUSG00000085664.1, intron 2 of 3) 14644 ENSMUSG00000085664.1 ENSMUSG00000085664 ENSMUST00000138617 Atxn7l1os2 antisense Interval_164679 chr9 40539493 40539713 + 0 NA Intergenic Intergenic -7757 ENSMUSG00000110922.1 ENSMUSG00000110922 ENSMUST00000216525 Gm35177 lincRNA Interval_75143 chr17 63936462 63936820 + 0 NA intron (ENSMUSG00000000127.15, intron 7 of 17) protein_coding-intron (ENSMUSG00000000127.15, intron 7 of 17) -72850 ENSMUSG00000045506.3 ENSMUSG00000045506 ENSMUST00000050753 A930002H24Rik protein_coding Interval_113842 chr4 59282418 59283149 + 0 NA Intergenic Intergenic 22732 ENSMUSG00000086952.1 ENSMUSG00000086952 ENSMUST00000124589 Gm12596 lincRNA Interval_142054 chr6 136807115 136808888 + 0 NA promoter-TSS (ENSMUSG00000060032.6) protein_coding-promoter-TSS (ENSMUSG00000060032.6) -332 ENSMUSG00000060032.6 ENSMUSG00000060032 ENSMUST00000203982 H2aj protein_coding Interval_103400 chr3 41234313 41234550 + 0 NA Intergenic Intergenic 56159 ENSMUSG00000106000.1 ENSMUSG00000106000 ENSMUST00000197066 Gm16508 lincRNA Interval_165976 chr9 55117281 55118017 + 0 NA Intergenic Intergenic -22279 ENSMUSG00000110793.1 ENSMUSG00000110793 ENSMUST00000216059 Gm7395 processed_pseudogene Interval_122659 chr5 24511815 24512972 + 0 NA intron (ENSMUSG00000067724.5, intron 1 of 1) protein_coding-intron (ENSMUSG00000067724.5, intron 1 of 1) 14809 ENSMUSG00000067724.5 ENSMUSG00000067724 ENSMUST00000088311 Gbx1 protein_coding Interval_151757 chr7 126449973 126450451 + 0 NA TTS (ENSMUSG00000030727.12) protein_coding-TTS (ENSMUSG00000030727.12) -2567 ENSMUSG00000030730.12 ENSMUSG00000030730 ENSMUST00000146973 Atp2a1 protein_coding Interval_11950 chr1 187452227 187452709 + 0 NA intron (ENSMUSG00000103923.1, intron 2 of 3) lincRNA-intron (ENSMUSG00000103923.1, intron 2 of 3) 4591 ENSMUSG00000103923.1 ENSMUSG00000103923 ENSMUST00000195611 Gm37896 lincRNA Interval_76117 chr17 75116592 75116906 + 0 NA intron (ENSMUSG00000001870.16, intron 3 of 34) protein_coding-intron (ENSMUSG00000001870.16, intron 3 of 33) -48458 ENSMUSG00000084025.1 ENSMUSG00000084025 ENSMUST00000120159 Gm6276 processed_pseudogene Interval_136175 chr6 51732211 51732854 + 0 NA Intergenic Intergenic -21451 ENSMUSG00000108145.1 ENSMUSG00000108145 ENSMUST00000203781 Gm38811 lincRNA Interval_82961 chr18 80018294 80020391 + 0 NA promoter-TSS (ENSMUSG00000117949.1) processed_pseudogene-promoter-TSS (ENSMUSG00000117949.1) -212 ENSMUSG00000118304.1 ENSMUSG00000118304 ENSMUST00000236770 Gm36718 processed_pseudogene Interval_13871 chr10 24111124 24111597 + 0 NA Intergenic Intergenic -1826 ENSMUSG00000037424.6 ENSMUSG00000037424 ENSMUST00000041180 Taar9 protein_coding Interval_109737 chr3 146426030 146427192 + 0 NA intron (ENSMUSG00000036825.12, intron 6 of 13) protein_coding-intron (ENSMUSG00000036825.12, intron 6 of 13) 21920 ENSMUSG00000036825.12 ENSMUSG00000036825 ENSMUST00000141103 Ssx2ip protein_coding Interval_29239 chr11 81982567 81983612 + 0 NA TTS (ENSMUSG00000109297.1) lincRNA-TTS (ENSMUSG00000109297.1) -2317 ENSMUSG00000084996.1 ENSMUSG00000084996 ENSMUST00000150772 Gm11419 lincRNA Interval_48000 chr13 95004748 95005035 + 0 NA intron (ENSMUSG00000042015.17, intron 4 of 6) protein_coding-intron (ENSMUSG00000042015.17, intron 5 of 12) 2533 ENSMUSG00000113871.1 ENSMUSG00000113871 ENSMUST00000221950 Gm48349 processed_pseudogene Interval_76599 chr17 82272526 82274398 + 0 NA Intergenic Intergenic 37585 ENSMUSG00000094390.1 ENSMUSG00000094390 ENSMUST00000174994 Gm23400 miRNA Interval_100229 chr2 167790254 167790536 + 0 NA Intergenic Intergenic 8342 ENSMUSG00000087624.1 ENSMUSG00000087624 ENSMUST00000124850 9230111E07Rik lincRNA Interval_151253 chr7 120240744 120241575 + 0 NA intron (ENSMUSG00000062017.15, intron 13 of 16) protein_coding-intron (ENSMUSG00000062017.15, intron 12 of 30) -37391 ENSMUSG00000062017.15 ENSMUSG00000062017 ENSMUST00000207961 Abca14 protein_coding Interval_11316 chr1 180919614 180920001 + 0 NA Intergenic Intergenic 13892 ENSMUSG00000026520.8 ENSMUSG00000026520 ENSMUST00000195270 Pycr2 protein_coding Interval_128821 chr5 115453227 115455053 + 0 NA TTS (ENSMUSG00000054256.11) protein_coding-TTS (ENSMUSG00000054256.11) -12126 ENSMUSG00000029522.12 ENSMUSG00000029522 ENSMUST00000125568 Pla2g1b protein_coding Interval_133879 chr6 13949675 13949872 + 0 NA intron (ENSMUSG00000097616.7, intron 2 of 2) lincRNA-intron (ENSMUSG00000097616.7, intron 2 of 2) -36325 ENSMUSG00000107562.1 ENSMUSG00000107562 ENSMUST00000203018 Gm44412 processed_pseudogene Interval_100211 chr2 167675245 167676204 + 0 NA intron (ENSMUSG00000090213.1, intron 1 of 5) protein_coding-intron (ENSMUSG00000090213.1, intron 1 of 5) -13191 ENSMUSG00000056501.3 ENSMUSG00000056501 ENSMUST00000070642 Cebpb protein_coding Interval_122156 chr5 18378993 18379739 + 0 NA Intergenic Intergenic -19011 ENSMUSG00000057614.6 ENSMUSG00000057614 ENSMUST00000074694 Gnai1 protein_coding Interval_139858 chr6 111699471 111699911 + 0 NA Intergenic Intergenic 71703 ENSMUSG00000089084.1 ENSMUSG00000089084 ENSMUST00000158459 Gm24005 misc_RNA Interval_133926 chr6 15728267 15728640 + 0 NA intron (ENSMUSG00000041390.18, intron 1 of 2) protein_coding-intron (ENSMUSG00000041390.18, intron 2 of 4) 7792 ENSMUSG00000041390.18 ENSMUSG00000041390 ENSMUST00000128849 Mdfic protein_coding Interval_27920 chr11 70860448 70860827 + 0 NA intron (ENSMUSG00000020817.16, intron 2 of 18) protein_coding-intron (ENSMUSG00000020817.16, intron 1 of 17) -4023 ENSMUSG00000093858.1 ENSMUSG00000093858 ENSMUST00000179676 Gm19967 sense_intronic Interval_78355 chr18 12128309 12129159 + 0 NA promoter-TSS (ENSMUSG00000024404.7) protein_coding-promoter-TSS (ENSMUSG00000024404.7) -7254 ENSMUSG00000049411.15 ENSMUSG00000049411 ENSMUST00000234833 Tmem241 protein_coding Interval_96475 chr2 124505698 124506407 + 0 NA intron (ENSMUSG00000027200.17, intron 5 of 20) protein_coding-intron (ENSMUSG00000027200.17, intron 5 of 20) -202603 ENSMUSG00000087450.1 ENSMUSG00000087450 ENSMUST00000137397 Gm13994 lincRNA Interval_26572 chr11 58969183 58971466 + 0 NA intron (ENSMUSG00000036964.14, intron 4 of 6) protein_coding-intron (ENSMUSG00000036964.14, intron 4 of 6) 6522 ENSMUSG00000036964.14 ENSMUSG00000036964 ENSMUST00000075141 Trim17 protein_coding Interval_140719 chr6 120835735 120836818 + 0 NA promoter-TSS (ENSMUSG00000009112.4) protein_coding-promoter-TSS (ENSMUSG00000009112.4) 64 ENSMUSG00000009112.4 ENSMUSG00000009112 ENSMUST00000009256 Bcl2l13 protein_coding Interval_162599 chr9 5663589 5664635 + 0 NA Intergenic Intergenic -132667 ENSMUSG00000110927.1 ENSMUSG00000110927 ENSMUST00000213873 Gm48506 processed_pseudogene Interval_155858 chr8 40329016 40329673 + 0 NA intron (ENSMUSG00000039478.15, intron 1 of 14) protein_coding-intron (ENSMUSG00000039478.15, intron 1 of 14) -21013 ENSMUSG00000031603.14 ENSMUSG00000031603 ENSMUST00000118639 Fgf20 protein_coding Interval_50099 chr14 7971678 7972365 + 0 NA intron (ENSMUSG00000025279.7, intron 6 of 7) protein_coding-intron (ENSMUSG00000025279.7, intron 6 of 7) 5201 ENSMUSG00000025279.7 ENSMUSG00000025279 ENSMUST00000145234 Dnase1l3 protein_coding Interval_51582 chr14 30505006 30505934 + 0 NA intron (ENSMUSG00000021962.9, intron 4 of 9) protein_coding-intron (ENSMUSG00000021962.9, intron 4 of 9) -18237 ENSMUSG00000021962.9 ENSMUSG00000021962 ENSMUST00000225934 Dcp1a protein_coding Interval_141258 chr6 126597979 126598224 + 0 NA Intergenic Intergenic -41932 ENSMUSG00000110390.1 ENSMUSG00000110390 ENSMUST00000210335 Gm45869 lincRNA Interval_97222 chr2 132322516 132323067 + 0 NA Intergenic Intergenic 59550 ENSMUSG00000058793.14 ENSMUSG00000058793 ENSMUST00000138194 Cds2 protein_coding Interval_154856 chr8 24419103 24421190 + 0 NA Intergenic Intergenic -2258 ENSMUSG00000097654.1 ENSMUSG00000097654 ENSMUST00000181338 Gm26714 antisense Interval_55211 chr14 79344003 79344344 + 0 NA promoter-TSS (ENSMUSG00000022020.15) protein_coding-promoter-TSS (ENSMUSG00000022020.15) 6648 ENSMUSG00000022020.15 ENSMUSG00000022020 ENSMUST00000165337 Naa16 protein_coding Interval_25906 chr11 52464049 52464939 + 0 NA Intergenic Intergenic 14609 ENSMUSG00000081297.1 ENSMUSG00000081297 ENSMUST00000120089 Gm12209 processed_pseudogene Interval_11285 chr1 180725374 180726901 + 0 NA promoter-TSS (ENSMUSG00000026499.5) protein_coding-promoter-TSS (ENSMUSG00000026499.5) -3720 ENSMUSG00000026499.5 ENSMUSG00000026499 ENSMUST00000192420 Acbd3 protein_coding Interval_85453 chr19 26672455 26672782 + 0 NA intron (ENSMUSG00000024921.17, intron 1 of 6) protein_coding-intron (ENSMUSG00000024921.17, intron 13 of 32) -49208 ENSMUSG00000093628.1 ENSMUSG00000093628 ENSMUST00000177453 Gm20616 antisense Interval_42253 chr13 11030309 11031605 + 0 NA Intergenic Intergenic 56534 ENSMUSG00000113673.1 ENSMUSG00000113673 ENSMUST00000221075 Gm47486 lincRNA Interval_345 chr1 4394501 4395178 + 0 NA intron (ENSMUSG00000025900.13, intron 1 of 3) protein_coding-intron (ENSMUSG00000025900.13, intron 1 of 29) 14402 ENSMUSG00000025900.13 ENSMUSG00000025900 ENSMUST00000027032 Rp1 protein_coding Interval_20639 chr10 119830113 119831611 + 0 NA intron (ENSMUSG00000085418.1, intron 4 of 4) protein_coding-intron (ENSMUSG00000034813.18, intron 1 of 22) 21415 ENSMUSG00000085418.1 ENSMUSG00000085418 ENSMUST00000135940 Grip1os1 antisense Interval_46638 chr13 67829147 67831597 + 0 NA promoter-TSS (ENSMUSG00000058246.8) protein_coding-promoter-TSS (ENSMUSG00000058246.8) 613 ENSMUSG00000097276.1 ENSMUSG00000097276 ENSMUST00000181912 4930525G20Rik antisense Interval_151137 chr7 118765186 118765468 + 0 NA intron (ENSMUSG00000030982.19, intron 1 of 23) protein_coding-intron (ENSMUSG00000030982.19, intron 1 of 23) -2690 ENSMUSG00000109303.1 ENSMUSG00000109303 ENSMUST00000208351 Gm44549 sense_intronic Interval_57222 chr15 7949940 7950447 + 0 NA intron (ENSMUSG00000039828.7, intron 10 of 17) protein_coding-intron (ENSMUSG00000039828.7, intron 10 of 17) -24882 ENSMUSG00000116090.1 ENSMUSG00000116090 ENSMUST00000229131 Rpl19-ps6 processed_pseudogene Interval_10327 chr1 169425304 169426246 + 0 NA Intergenic Intergenic 28094 ENSMUSG00000058622.1 ENSMUSG00000058622 ENSMUST00000076828 Gm5265 processed_pseudogene Interval_20104 chr10 114726122 114726347 + 0 NA intron (ENSMUSG00000050663.8, intron 2 of 18) protein_coding-intron (ENSMUSG00000050663.8, intron 2 of 18) -31513 ENSMUSG00000089934.1 ENSMUSG00000089934 ENSMUST00000161975 4930473D10Rik antisense Interval_70434 chr17 10209223 10209675 + 0 NA TTS (ENSMUSG00000062078.15) protein_coding-TTS (ENSMUSG00000062078.15) 109912 ENSMUSG00000062078.15 ENSMUSG00000062078 ENSMUST00000233684 Qk protein_coding Interval_106866 chr3 101408564 101410553 + 0 NA exon (ENSMUSG00000104639.1, exon 1 of 1) sense_intronic-exon (ENSMUSG00000104639.1, exon 1 of 1) 1765 ENSMUSG00000104639.1 ENSMUSG00000104639 ENSMUST00000197514 Gm42939 sense_intronic Interval_40127 chr12 101810865 101811843 + 0 NA intron (ENSMUSG00000021186.9, intron 3 of 10) protein_coding-intron (ENSMUSG00000021186.9, intron 3 of 10) 7114 ENSMUSG00000021186.9 ENSMUSG00000021186 ENSMUST00000221373 Fbln5 protein_coding Interval_39536 chr12 89513699 89514284 + 0 NA intron (ENSMUSG00000066392.12, intron 13 of 20) protein_coding-intron (ENSMUSG00000066392.12, intron 12 of 19) 82655 ENSMUSG00000080680.1 ENSMUSG00000080680 ENSMUST00000117030 Gm23989 miRNA Interval_38375 chr12 78062146 78062356 + 0 NA Intergenic Intergenic -103295 ENSMUSG00000088039.1 ENSMUSG00000088039 ENSMUST00000157414 Gm24994 snoRNA Interval_56144 chr14 106980089 106981483 + 0 NA Intergenic Intergenic 214756 ENSMUSG00000077224.1 ENSMUSG00000077224 ENSMUST00000104036 Gm23437 snoRNA Interval_159899 chr8 104936550 104936849 + 0 NA Intergenic Intergenic -2866 ENSMUSG00000118611.1 ENSMUSG00000118611 ENSMUST00000239300 AC166833.1 unprocessed_pseudogene Interval_95597 chr2 112621604 112621904 + 0 NA intron (ENSMUSG00000003604.14, intron 1 of 4) protein_coding-intron (ENSMUSG00000003604.14, intron 2 of 5) 7724 ENSMUSG00000105420.1 ENSMUSG00000105420 ENSMUST00000199821 Gm44374 miRNA Interval_134928 chr6 33776405 33776646 + 0 NA intron (ENSMUSG00000029763.17, intron 2 of 4) protein_coding-intron (ENSMUSG00000029763.17, intron 11 of 17) -84371 ENSMUSG00000107103.1 ENSMUSG00000107103 ENSMUST00000202529 Gm43164 TEC Interval_44185 chr13 41715524 41716769 + 0 NA Intergenic Intergenic 66703 ENSMUSG00000054258.9 ENSMUSG00000054258 ENSMUST00000067176 Gm5082 lincRNA Interval_17273 chr10 75499542 75500526 + 0 NA intron (ENSMUSG00000033416.15, intron 2 of 3) protein_coding-intron (ENSMUSG00000033416.15, intron 5 of 8) 3973 ENSMUSG00000111955.1 ENSMUSG00000111955 ENSMUST00000220319 Gm48148 unprocessed_pseudogene Interval_27182 chr11 63897634 63899301 + 0 NA intron (ENSMUSG00000070407.5, intron 1 of 1) protein_coding-intron (ENSMUSG00000070407.5, intron 1 of 1) 23823 ENSMUSG00000070407.5 ENSMUSG00000070407 ENSMUST00000094103 Hs3st3b1 protein_coding Interval_102346 chr3 22073987 22077401 + 0 NA promoter-TSS (ENSMUSG00000027630.13) protein_coding-promoter-TSS (ENSMUSG00000027630.13) 448 ENSMUSG00000106019.1 ENSMUSG00000106019 ENSMUST00000199072 Gm43672 lincRNA Interval_95039 chr2 103391487 103392161 + 0 NA Intergenic Intergenic -2782 ENSMUSG00000070794.11 ENSMUSG00000070794 ENSMUST00000153797 BC016548 lincRNA Interval_114416 chr4 75684972 75685273 + 0 NA Intergenic Intergenic -169396 ENSMUSG00000084253.1 ENSMUSG00000084253 ENSMUST00000118109 Gm11256 processed_pseudogene Interval_42890 chr13 21167159 21168461 + 0 NA Intergenic Intergenic -12414 ENSMUSG00000021326.13 ENSMUSG00000021326 ENSMUST00000124794 Trim27 protein_coding Interval_74922 chr17 57328339 57329481 + 0 NA TTS (ENSMUSG00000034116.17) protein_coding-TTS (ENSMUSG00000034116.17) 25846 ENSMUSG00000034116.17 ENSMUSG00000034116 ENSMUST00000008847 Vav1 protein_coding Interval_76270 chr17 78635239 78636533 + 0 NA Intergenic Intergenic 61958 ENSMUSG00000024076.10 ENSMUSG00000024076 ENSMUST00000232864 Vit protein_coding Interval_83280 chr18 83392040 83392996 + 0 NA TTS (ENSMUSG00000117715.1) lincRNA-TTS (ENSMUSG00000117715.1) 7103 ENSMUSG00000117715.1 ENSMUSG00000117715 ENSMUST00000236434 Gm50413 lincRNA Interval_12646 chr10 4122439 4124408 + 0 NA intron (ENSMUSG00000040675.17, intron 26 of 27) protein_coding-intron (ENSMUSG00000040675.17, intron 26 of 27) 19110 ENSMUSG00000065792.1 ENSMUSG00000065792 ENSMUST00000083858 Gm25515 snRNA Interval_73813 chr17 44030652 44031007 + 0 NA intron (ENSMUSG00000039601.16, intron 1 of 1) protein_coding-intron (ENSMUSG00000039601.16, intron 3 of 3) 4119 ENSMUSG00000039601.16 ENSMUSG00000039601 ENSMUST00000229939 Rcan2 protein_coding Interval_73231 chr17 35695002 35695582 + 0 NA intron (ENSMUSG00000003534.17, intron 1 of 6) protein_coding-intron (ENSMUSG00000003534.17, intron 1 of 17) 4017 ENSMUSG00000093921.1 ENSMUSG00000093921 ENSMUST00000177607 Gm23864 snRNA Interval_35745 chr12 28817229 28817668 + 0 NA intron (ENSMUSG00000036613.8, intron 4 of 9) protein_coding-intron (ENSMUSG00000036613.8, intron 4 of 9) 7310 ENSMUSG00000113886.1 ENSMUSG00000113886 ENSMUST00000222829 Gm48905 sense_intronic Interval_167599 chr9 70930017 70930729 + 0 NA promoter-TSS (ENSMUSG00000111631.1) processed_transcript-promoter-TSS (ENSMUSG00000111631.1) -115 ENSMUSG00000111631.1 ENSMUSG00000111631 ENSMUST00000215190 Gm32017 processed_transcript Interval_155176 chr8 27214604 27215361 + 0 NA intron (ENSMUSG00000039720.7, intron 1 of 1) protein_coding-intron (ENSMUSG00000039720.7, intron 1 of 1) 8846 ENSMUSG00000039720.7 ENSMUSG00000039720 ENSMUST00000209299 Got1l1 protein_coding Interval_154484 chr8 18612819 18613434 + 0 NA TTS (ENSMUSG00000077287.1) snoRNA-TTS (ENSMUSG00000077287.1) 983 ENSMUSG00000077287.1 ENSMUSG00000077287 ENSMUST00000104099 Gm25763 snoRNA Interval_26642 chr11 59400074 59400751 + 0 NA Intergenic Intergenic -24755 ENSMUSG00000049291.6 ENSMUSG00000049291 ENSMUST00000061481 Prss38 protein_coding Interval_132443 chr5 144947737 144948784 + 0 NA intron (ENSMUSG00000038780.14, intron 1 of 18) protein_coding-intron (ENSMUSG00000038780.14, intron 1 of 17) -50266 ENSMUSG00000038780.14 ENSMUSG00000038780 ENSMUST00000198621 Smurf1 protein_coding Interval_78193 chr18 10041296 10041540 + 0 NA intron (ENSMUSG00000047879.17, intron 1 of 5) protein_coding-intron (ENSMUSG00000047879.17, intron 1 of 2) 3687 ENSMUSG00000047879.17 ENSMUSG00000047879 ENSMUST00000150321 Usp14 protein_coding Interval_44578 chr13 46358797 46359604 + 0 NA Intergenic Intergenic -62622 ENSMUSG00000038132.6 ENSMUSG00000038132 ENSMUST00000225890 Rbm24 protein_coding Interval_107494 chr3 108102685 108102873 + 0 NA Intergenic Intergenic 9641 ENSMUSG00000009108.15 ENSMUSG00000009108 ENSMUST00000130013 Gnat2 protein_coding Interval_116645 chr4 116282243 116282597 + 0 NA intron (ENSMUSG00000111410.1, intron 5 of 9) protein_coding-intron (ENSMUSG00000028698.13, intron 5 of 9) 60802 ENSMUSG00000028698.13 ENSMUSG00000028698 ENSMUST00000106490 Pik3r3 protein_coding Interval_29492 chr11 84421314 84421527 + 0 NA Intergenic Intergenic 92102 ENSMUSG00000018697.14 ENSMUSG00000018697 ENSMUST00000148434 Aatf protein_coding Interval_111156 chr4 13331978 13332501 + 0 NA Intergenic Intergenic -65189 ENSMUSG00000080359.2 ENSMUSG00000080359 ENSMUST00000116709 Gm26250 miRNA Interval_86765 chr19 43711378 43712918 + 0 NA intron (ENSMUSG00000025192.13, intron 6 of 8) protein_coding-intron (ENSMUSG00000025192.13, intron 6 of 12) 22339 ENSMUSG00000025192.13 ENSMUSG00000025192 ENSMUST00000131293 Entpd7 protein_coding Interval_58654 chr15 36848095 36848443 + 0 NA Intergenic Intergenic 5453 ENSMUSG00000115750.1 ENSMUSG00000115750 ENSMUST00000226620 Gm49282 lincRNA Interval_17630 chr10 78358642 78358959 + 0 NA Intergenic Intergenic 6297 ENSMUSG00000112641.1 ENSMUSG00000112641 ENSMUST00000218247 Gm40709 bidirectional_promoter_lncRNA Interval_146225 chr7 44830933 44831940 + 0 NA TTS (ENSMUSG00000109511.1) protein_coding-TTS (ENSMUSG00000109511.1) -14862 ENSMUSG00000038539.15 ENSMUSG00000038539 ENSMUST00000209072 Atf5 protein_coding Interval_101055 chr2 174675542 174676146 + 0 NA intron (ENSMUSG00000050600.5, intron 3 of 4) protein_coding-intron (ENSMUSG00000050600.5, intron 3 of 4) 32310 ENSMUSG00000050600.5 ENSMUSG00000050600 ENSMUST00000059452 Zfp831 protein_coding Interval_96953 chr2 129871037 129871271 + 0 NA Intergenic Intergenic 70637 ENSMUSG00000037885.18 ENSMUSG00000037885 ENSMUST00000166282 Stk35 protein_coding Interval_84549 chr19 12662036 12663043 + 0 NA Intergenic Intergenic -2716 ENSMUSG00000065892.1 ENSMUSG00000065892 ENSMUST00000083958 Gm24521 snRNA Interval_117906 chr4 126982556 126984472 + 0 NA promoter-TSS (ENSMUSG00000081609.1) processed_pseudogene-promoter-TSS (ENSMUSG00000081609.1) 75 ENSMUSG00000081609.1 ENSMUSG00000081609 ENSMUST00000117303 Gm12939 processed_pseudogene Interval_90338 chr2 29845543 29847038 + 0 NA promoter-TSS (ENSMUSG00000065485.1) miRNA-promoter-TSS (ENSMUSG00000065485.1) -563 ENSMUSG00000065485.1 ENSMUSG00000065485 ENSMUST00000083551 Mir219a-2 miRNA Interval_60656 chr15 75974164 75975774 + 0 NA TTS (ENSMUSG00000034429.15) protein_coding-TTS (ENSMUSG00000034429.15) 2585 ENSMUSG00000034429.15 ENSMUSG00000034429 ENSMUST00000156444 Zfp707 protein_coding Interval_126135 chr5 78189477 78190114 + 0 NA Intergenic Intergenic -280335 ENSMUSG00000106960.1 ENSMUSG00000106960 ENSMUST00000202676 Gm42673 processed_pseudogene Interval_126240 chr5 83782453 83784568 + 0 NA Intergenic Intergenic -59921 ENSMUSG00000077474.1 ENSMUSG00000077474 ENSMUST00000104286 Gm24792 snoRNA Interval_159699 chr8 98241403 98241697 + 0 NA Intergenic Intergenic -16887 ENSMUSG00000110194.1 ENSMUSG00000110194 ENSMUST00000210793 Gm7192 processed_pseudogene Interval_82873 chr18 78123553 78124589 + 0 NA promoter-TSS (ENSMUSG00000059336.14) protein_coding-promoter-TSS (ENSMUSG00000059336.14) 18048 ENSMUSG00000059336.14 ENSMUSG00000059336 ENSMUST00000160639 Slc14a1 protein_coding Interval_134459 chr6 28909588 28910118 + 0 NA intron (ENSMUSG00000001424.14, intron 16 of 16) protein_coding-intron (ENSMUSG00000001424.14, intron 16 of 16) -71781 ENSMUSG00000092090.2 ENSMUSG00000092090 ENSMUST00000164104 Gm3294 lincRNA Interval_16577 chr10 64128077 64128285 + 0 NA intron (ENSMUSG00000060843.11, intron 7 of 17) protein_coding-intron (ENSMUSG00000060843.11, intron 6 of 16) -37934 ENSMUSG00000042846.8 ENSMUSG00000042846 ENSMUST00000133588 Lrrtm3 protein_coding Interval_25503 chr11 49281151 49281548 + 0 NA TTS (ENSMUSG00000059864.2) protein_coding-TTS (ENSMUSG00000059864.2) 3045 ENSMUSG00000059864.2 ENSMUSG00000059864 ENSMUST00000078932 Olfr1393 protein_coding Interval_2273 chr1 37616367 37616709 + 0 NA intron (ENSMUSG00000026090.16, intron 7 of 9) protein_coding-intron (ENSMUSG00000026090.16, intron 1 of 3) 2279 ENSMUSG00000089767.1 ENSMUSG00000089767 ENSMUST00000160659 4930556I23Rik antisense Interval_113523 chr4 55514520 55515476 + 0 NA Intergenic Intergenic 6704 ENSMUSG00000082952.1 ENSMUSG00000082952 ENSMUST00000119155 Gm12507 processed_pseudogene Interval_118050 chr4 128635200 128636654 + 0 NA Intergenic Intergenic -1544 ENSMUSG00000084891.1 ENSMUSG00000084891 ENSMUST00000141242 Gm12958 lincRNA Interval_66569 chr16 35183067 35183534 + 0 NA intron (ENSMUSG00000022840.9, intron 1 of 20) protein_coding-intron (ENSMUSG00000022840.9, intron 1 of 20) 51623 ENSMUSG00000084581.1 ENSMUSG00000084581 ENSMUST00000122632 Gm25179 snRNA Interval_75901 chr17 72881283 72882452 + 0 NA Intergenic Intergenic -39321 ENSMUSG00000024063.13 ENSMUSG00000024063 ENSMUST00000148556 Lbh protein_coding Interval_78709 chr18 18546094 18546286 + 0 NA Intergenic Intergenic -302033 ENSMUSG00000117574.1 ENSMUSG00000117574 ENSMUST00000234831 Gm50084 lincRNA Interval_536 chr1 7068593 7069320 + 0 NA Intergenic Intergenic 33041 ENSMUSG00000103629.1 ENSMUSG00000103629 ENSMUST00000195648 Gm5694 processed_pseudogene Interval_118292 chr4 130087274 130088041 + 0 NA intron (ENSMUSG00000040690.15, intron 46 of 60) protein_coding-intron (ENSMUSG00000040690.15, intron 55 of 69) -14901 ENSMUSG00000028779.16 ENSMUSG00000028779 ENSMUST00000030563 Pef1 protein_coding Interval_157282 chr8 68991840 68992155 + 0 NA intron (ENSMUSG00000110594.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000110594.1, intron 1 of 1) 9686 ENSMUSG00000110594.1 ENSMUSG00000110594 ENSMUST00000212717 Gm33103 lincRNA Interval_149128 chr7 94372184 94373200 + 0 NA promoter-TSS (ENSMUSG00000108315.1) lincRNA-promoter-TSS (ENSMUSG00000108315.1) -120 ENSMUSG00000108315.1 ENSMUSG00000108315 ENSMUST00000206678 Gm44601 lincRNA Interval_171270 chr9 115860532 115861143 + 0 NA Intergenic Intergenic -76305 ENSMUSG00000056880.12 ENSMUSG00000056880 ENSMUST00000121770 Gadl1 protein_coding Interval_15109 chr10 42633916 42634153 + 0 NA intron (ENSMUSG00000038280.12, intron 2 of 6) protein_coding-intron (ENSMUSG00000038280.12, intron 2 of 5) -44932 ENSMUSG00000038280.12 ENSMUSG00000038280 ENSMUST00000154048 Ostm1 protein_coding Interval_97822 chr2 144279587 144279986 + 0 NA exon (ENSMUSG00000027424.11, exon 5 of 5) protein_coding-exon (ENSMUSG00000027424.11, exon 5 of 5) 9123 ENSMUSG00000027424.11 ENSMUSG00000027424 ENSMUST00000110027 Mgme1 protein_coding Interval_19317 chr10 96641526 96641771 + 0 NA Intergenic Intergenic 24094 ENSMUSG00000036478.8 ENSMUSG00000036478 ENSMUST00000218953 Btg1 protein_coding Interval_73438 chr17 37250370 37250898 + 0 NA exon (ENSMUSG00000092340.3, exon 2 of 2) unprocessed_pseudogene-exon (ENSMUSG00000092340.3, exon 2 of 2) 1204 ENSMUSG00000092340.3 ENSMUSG00000092340 ENSMUST00000173181 Olfr754-ps1 unprocessed_pseudogene Interval_165078 chr9 44432593 44433111 + 0 NA TTS (ENSMUSG00000074397.5) protein_coding-TTS (ENSMUSG00000074397.5) 8163 ENSMUSG00000074397.5 ENSMUSG00000074397 ENSMUST00000215980 Foxr1 protein_coding Interval_174092 chrX 134627831 134628660 + 0 NA Intergenic Intergenic -2501 ENSMUSG00000085226.1 ENSMUSG00000085226 ENSMUST00000137737 Gm7855 processed_pseudogene Interval_21281 chr10 127641748 127644430 + 0 NA promoter-TSS (ENSMUSG00000002147.18) protein_coding-promoter-TSS (ENSMUSG00000002147.18) -6702 ENSMUSG00000112696.1 ENSMUSG00000112696 ENSMUST00000219311 Gm48815 processed_pseudogene Interval_28962 chr11 79590608 79591728 + 0 NA promoter-TSS (ENSMUSG00000017639.13) protein_coding-promoter-TSS (ENSMUSG00000017639.13) -3997 ENSMUSG00000064486.1 ENSMUSG00000064486 ENSMUST00000082552 Gm23293 snRNA Interval_31016 chr11 97727387 97727596 + 0 NA promoter-TSS (ENSMUSG00000018547.8) protein_coding-promoter-TSS (ENSMUSG00000018547.8) -748 ENSMUSG00000018547.8 ENSMUSG00000018547 ENSMUST00000144012 Pip4k2b protein_coding Interval_29315 chr11 82886732 82887847 + 0 NA intron (ENSMUSG00000018841.17, intron 2 of 8) protein_coding-intron (ENSMUSG00000018841.17, intron 3 of 9) 3300 ENSMUSG00000018841.17 ENSMUSG00000018841 ENSMUST00000100718 Rad51d protein_coding Interval_161711 chr8 122259319 122259995 + 0 NA intron (ENSMUSG00000043903.4, intron 1 of 1) protein_coding-intron (ENSMUSG00000092329.1, intron 1 of 15) 1037 ENSMUSG00000043903.4 ENSMUSG00000043903 ENSMUST00000055537 Zfp469 protein_coding Interval_31530 chr11 101196490 101196720 + 0 NA TTS (ENSMUSG00000006920.14) protein_coding-TTS (ENSMUSG00000006920.14) 12800 ENSMUSG00000006920.14 ENSMUSG00000006920 ENSMUST00000151291 Ezh1 protein_coding Interval_165937 chr9 54817967 54818233 + 0 NA Intergenic Intergenic 7182 ENSMUSG00000111686.1 ENSMUSG00000111686 ENSMUST00000213253 Rab7-ps1 processed_pseudogene Interval_7712 chr1 133215155 133215801 + 0 NA intron (ENSMUSG00000041757.17, intron 1 of 22) protein_coding-intron (ENSMUSG00000041757.17, intron 1 of 22) -41064 ENSMUSG00000041757.17 ENSMUSG00000041757 ENSMUST00000190208 Plekha6 protein_coding Interval_170415 chr9 107763707 107764092 + 0 NA TTS (ENSMUSG00000102899.1) antisense-TTS (ENSMUSG00000102899.1) 1091 ENSMUSG00000102899.1 ENSMUSG00000102899 ENSMUST00000194573 Gm37850 antisense Interval_72340 chr17 29300876 29301089 + 0 NA intron (ENSMUSG00000052712.17, intron 7 of 7) protein_coding-intron (ENSMUSG00000052712.17, intron 8 of 8) -7156 ENSMUSG00000094326.1 ENSMUSG00000094326 ENSMUST00000178657 Gm10045 transcribed_processed_pseudogene Interval_37588 chr12 70104288 70104796 + 0 NA intron (ENSMUSG00000021068.17, intron 1 of 29) protein_coding-intron (ENSMUSG00000021068.17, intron 2 of 29) -9032 ENSMUSG00000114099.1 ENSMUSG00000114099 ENSMUST00000221641 Gm48695 bidirectional_promoter_lncRNA Interval_71214 chr17 21213901 21215276 + 0 NA Intergenic Intergenic 11414 ENSMUSG00000093788.2 ENSMUSG00000093788 ENSMUST00000177028 Vmn1r-ps147 unprocessed_pseudogene Interval_91446 chr2 38925163 38927342 + 0 NA promoter-TSS (ENSMUSG00000063972.13) protein_coding-promoter-TSS (ENSMUSG00000063972.13) -5726 ENSMUSG00000046618.7 ENSMUSG00000046618 ENSMUST00000057279 Olfml2a protein_coding Interval_135171 chr6 37209469 37209706 + 0 NA intron (ENSMUSG00000038665.15, intron 1 of 32) protein_coding-intron (ENSMUSG00000038665.15, intron 2 of 32) 90597 ENSMUSG00000038665.15 ENSMUSG00000038665 ENSMUST00000136457 Dgki protein_coding Interval_65277 chr16 21192531 21192924 + 0 NA Intergenic Intergenic -17797 ENSMUSG00000005958.15 ENSMUSG00000005958 ENSMUST00000160053 Ephb3 protein_coding Interval_27841 chr11 70355677 70356731 + 0 NA Intergenic Intergenic -1934 ENSMUSG00000082145.1 ENSMUSG00000082145 ENSMUST00000120351 Gm12312 processed_pseudogene Interval_125502 chr5 67751537 67752587 + 0 NA intron (ENSMUSG00000037685.15, intron 7 of 16) protein_coding-intron (ENSMUSG00000037685.15, intron 15 of 36) 7268 ENSMUSG00000106859.1 ENSMUSG00000106859 ENSMUST00000201074 Gm42737 TEC Interval_29965 chr11 88412537 88412924 + 0 NA intron (ENSMUSG00000069769.13, intron 3 of 5) protein_coding-intron (ENSMUSG00000069769.13, intron 8 of 13) 20784 ENSMUSG00000084411.2 ENSMUSG00000084411 ENSMUST00000120278 Gm11510 processed_pseudogene Interval_167227 chr9 66307268 66307805 + 0 NA Intergenic Intergenic -42914 ENSMUSG00000038664.16 ENSMUSG00000038664 ENSMUST00000130854 Herc1 protein_coding Interval_38611 chr12 80537223 80538514 + 0 NA intron (ENSMUSG00000021130.8, intron 2 of 15) protein_coding-intron (ENSMUSG00000021130.8, intron 1 of 14) -18952 ENSMUSG00000097801.1 ENSMUSG00000097801 ENSMUST00000181852 Gm26777 bidirectional_promoter_lncRNA Interval_119065 chr4 135299874 135301728 + 0 NA Intergenic Intergenic -6548 ENSMUSG00000085002.1 ENSMUSG00000085002 ENSMUST00000145711 Gm12984 antisense Interval_94362 chr2 90496457 90496906 + 0 NA intron (ENSMUSG00000025314.16, intron 1 of 23) protein_coding-intron (ENSMUSG00000025314.16, intron 1 of 23) 17431 ENSMUSG00000085471.1 ENSMUSG00000085471 ENSMUST00000126953 4933423P22Rik antisense Interval_140407 chr6 117906151 117909252 + 0 NA promoter-TSS (ENSMUSG00000042087.5) TEC-promoter-TSS (ENSMUSG00000042087.5) 58 ENSMUSG00000042087.5 ENSMUSG00000042087 ENSMUST00000035534 4933440N22Rik TEC Interval_96478 chr2 124640677 124641474 + 0 NA intron (ENSMUSG00000027200.17, intron 1 of 18) protein_coding-intron (ENSMUSG00000027200.17, intron 1 of 16) -67580 ENSMUSG00000087450.1 ENSMUSG00000087450 ENSMUST00000137397 Gm13994 lincRNA Interval_172460 chrX 20729968 20730729 + 0 NA Intergenic Intergenic 18523 ENSMUSG00000031066.10 ENSMUSG00000031066 ENSMUST00000149960 Usp11 protein_coding Interval_73371 chr17 36835962 36837661 + 0 NA promoter-TSS (ENSMUSG00000024457.16) protein_coding-promoter-TSS (ENSMUSG00000024457.16) -330 ENSMUSG00000024457.16 ENSMUSG00000024457 ENSMUST00000156872 Trim26 protein_coding Interval_95055 chr2 103554090 103554305 + 0 NA Intergenic Intergenic 6938 ENSMUSG00000081687.1 ENSMUSG00000081687 ENSMUST00000118456 Gm13996 processed_pseudogene Interval_76072 chr17 74708243 74708655 + 0 NA Intergenic Intergenic -61617 ENSMUSG00000024078.7 ENSMUSG00000024078 ENSMUST00000234264 Ttc27 protein_coding Interval_150158 chr7 107471141 107471381 + 0 NA intron (ENSMUSG00000062542.11, intron 3 of 6) protein_coding-intron (ENSMUSG00000062542.11, intron 3 of 6) -32801 ENSMUSG00000062542.11 ENSMUSG00000062542 ENSMUST00000127444 Syt9 protein_coding Interval_93801 chr2 76992649 76992896 + 0 NA Intergenic Intergenic 29924 ENSMUSG00000044033.16 ENSMUSG00000044033 ENSMUST00000111833 Ccdc141 protein_coding Interval_44425 chr13 44769678 44770248 + 0 NA intron (ENSMUSG00000038518.15, intron 2 of 4) protein_coding-intron (ENSMUSG00000038518.15, intron 2 of 18) 38593 ENSMUSG00000038518.15 ENSMUSG00000038518 ENSMUST00000173003 Jarid2 protein_coding Interval_57263 chr15 8229649 8230078 + 0 NA intron (ENSMUSG00000039801.7, intron 34 of 52) protein_coding-intron (ENSMUSG00000039801.7, intron 34 of 52) 6720 ENSMUSG00000039801.7 ENSMUSG00000039801 ENSMUST00000128772 Cplane1 protein_coding Interval_125531 chr5 69286636 69287201 + 0 NA intron (ENSMUSG00000037653.7, intron 1 of 1) protein_coding-intron (ENSMUSG00000037653.7, intron 1 of 1) -9348 ENSMUSG00000107312.1 ENSMUSG00000107312 ENSMUST00000201812 Gm43229 TEC Interval_86170 chr19 37527754 37527980 + 0 NA intron (ENSMUSG00000053799.8, intron 1 of 22) protein_coding-intron (ENSMUSG00000053799.8, intron 1 of 22) 6988 ENSMUSG00000053799.8 ENSMUSG00000053799 ENSMUST00000238817 Exoc6 protein_coding Interval_155930 chr8 41101863 41102382 + 0 NA intron (ENSMUSG00000045636.16, intron 1 of 1) protein_coding-intron (ENSMUSG00000045636.16, intron 1 of 13) 49012 ENSMUSG00000085672.1 ENSMUSG00000085672 ENSMUST00000125903 Gm16193 antisense Interval_36783 chr12 53904440 53904648 + 0 NA intron (ENSMUSG00000021010.9, intron 4 of 10) protein_coding-intron (ENSMUSG00000021010.9, intron 5 of 11) 174848 ENSMUSG00000099407.1 ENSMUSG00000099407 ENSMUST00000185390 1700060O08Rik antisense Interval_168449 chr9 80670974 80671722 + 0 NA Intergenic Intergenic -38647 ENSMUSG00000111717.1 ENSMUSG00000111717 ENSMUST00000214710 Gm39380 lincRNA Interval_59691 chr15 58562935 58563345 + 0 NA intron (ENSMUSG00000037106.8, intron 10 of 40) protein_coding-intron (ENSMUSG00000037106.8, intron 10 of 40) -2474 ENSMUSG00000084485.1 ENSMUSG00000084485 ENSMUST00000122536 Gm23789 misc_RNA Interval_13704 chr10 21195839 21196080 + 0 NA Intergenic Intergenic -6777 ENSMUSG00000110967.1 ENSMUSG00000110967 ENSMUST00000213692 Gm40608 lincRNA Interval_42779 chr13 19389560 19390697 + 0 NA intron (ENSMUSG00000003062.13, intron 2 of 3) protein_coding-intron (ENSMUSG00000003062.13, intron 1 of 8) 5325 ENSMUSG00000105848.1 ENSMUSG00000105848 ENSMUST00000196136 Gm42683 TEC Interval_52487 chr14 46913982 46914618 + 0 NA intron (ENSMUSG00000021838.17, intron 3 of 12) protein_coding-intron (ENSMUSG00000021838.17, intron 2 of 12) 20780 ENSMUSG00000114996.1 ENSMUSG00000114996 ENSMUST00000228844 Gm48958 TEC Interval_120302 chr4 145294306 145295865 + 0 NA intron (ENSMUSG00000028602.12, intron 4 of 12) protein_coding-intron (ENSMUSG00000028602.12, intron 4 of 12) 20079 ENSMUSG00000028602.12 ENSMUSG00000028602 ENSMUST00000123027 Tnfrsf8 protein_coding Interval_58775 chr15 38005922 38007272 + 0 NA TTS (ENSMUSG00000037487.7) protein_coding-TTS (ENSMUSG00000037487.7) -35982 ENSMUSG00000037487.7 ENSMUSG00000037487 ENSMUST00000227143 Ubr5 protein_coding Interval_154248 chr8 13785194 13786495 + 0 NA exon (ENSMUSG00000038398.8, exon 1 of 9) protein_coding-exon (ENSMUSG00000038398.8, exon 1 of 9) 209 ENSMUSG00000038398.8 ENSMUSG00000038398 ENSMUST00000211643 Upf3a protein_coding Interval_12425 chr1 193360920 193361389 + 0 NA intron (ENSMUSG00000016179.11, intron 2 of 11) protein_coding-intron (ENSMUSG00000016179.11, intron 2 of 12) -5686 ENSMUSG00000103895.1 ENSMUSG00000103895 ENSMUST00000191875 Gm37942 TEC Interval_30105 chr11 89233043 89233549 + 0 NA Intergenic Intergenic 69036 ENSMUSG00000048616.4 ENSMUSG00000048616 ENSMUST00000061728 Nog protein_coding Interval_27184 chr11 63913961 63914948 + 0 NA intron (ENSMUSG00000070407.5, intron 1 of 1) protein_coding-intron (ENSMUSG00000070407.5, intron 1 of 1) 7836 ENSMUSG00000070407.5 ENSMUSG00000070407 ENSMUST00000094103 Hs3st3b1 protein_coding Interval_40167 chr12 102232755 102233025 + 0 NA intron (ENSMUSG00000041771.14, intron 10 of 16) protein_coding-intron (ENSMUSG00000041771.14, intron 10 of 16) 20797 ENSMUSG00000105037.1 ENSMUSG00000105037 ENSMUST00000200458 Gm25203 snoRNA Interval_100826 chr2 172738843 172739700 + 0 NA Intergenic Intergenic 125070 ENSMUSG00000093160.1 ENSMUSG00000093160 ENSMUST00000175419 Gm22773 miRNA Interval_59034 chr15 41905102 41907008 + 0 NA Intergenic Intergenic -16021 ENSMUSG00000116083.1 ENSMUSG00000116083 ENSMUST00000229137 Gm5469 processed_pseudogene Interval_82985 chr18 80176163 80176607 + 0 NA Intergenic Intergenic -9854 ENSMUSG00000118061.1 ENSMUSG00000118061 ENSMUST00000236423 Rbfaos lincRNA Interval_9247 chr1 155478993 155479208 + 0 NA Intergenic Intergenic 48043 ENSMUSG00000073535.5 ENSMUSG00000073535 ENSMUST00000194133 Gm5532 lincRNA Interval_121420 chr4 155696791 155698300 + 0 NA Intergenic Intergenic 3203 ENSMUSG00000074738.2 ENSMUSG00000074738 ENSMUST00000099265 Fndc10 protein_coding Interval_120531 chr4 149170251 149171132 + 0 NA Intergenic Intergenic -3920 ENSMUSG00000028961.15 ENSMUSG00000028961 ENSMUST00000143944 Pgd protein_coding Interval_55894 chr14 101857891 101858139 + 0 NA intron (ENSMUSG00000033060.16, intron 2 of 5) protein_coding-intron (ENSMUSG00000033060.16, intron 4 of 30) 17508 ENSMUSG00000033060.16 ENSMUSG00000033060 ENSMUST00000160038 Lmo7 protein_coding Interval_126911 chr5 97023943 97024433 + 0 NA intron (ENSMUSG00000034663.13, intron 1 of 13) protein_coding-intron (ENSMUSG00000034663.13, intron 1 of 15) -21993 ENSMUSG00000104591.1 ENSMUSG00000104591 ENSMUST00000198963 Gm43145 TEC Interval_38506 chr12 79715335 79716178 + 0 NA intron (ENSMUSG00000059060.15, intron 8 of 10) protein_coding-intron (ENSMUSG00000059060.15, intron 8 of 10) 209738 ENSMUSG00000112765.1 ENSMUSG00000112765 ENSMUST00000219857 9430078K24Rik lincRNA Interval_159575 chr8 95545526 95546273 + 0 NA exon (ENSMUSG00000036598.4, exon 6 of 9) protein_coding-exon (ENSMUSG00000036598.4, exon 6 of 9) -5894 ENSMUSG00000110577.1 ENSMUSG00000110577 ENSMUST00000212067 1700112L15Rik TEC Interval_99416 chr2 160824820 160825916 + 0 NA intron (ENSMUSG00000035877.17, intron 1 of 2) protein_coding-intron (ENSMUSG00000035877.17, intron 1 of 2) -20245 ENSMUSG00000081854.1 ENSMUSG00000081854 ENSMUST00000118983 Gm11447 processed_pseudogene Interval_53413 chr14 57116004 57116807 + 0 NA promoter-TSS (ENSMUSG00000089840.1) protein_coding-promoter-TSS (ENSMUSG00000089840.1) -522 ENSMUSG00000089840.1 ENSMUSG00000089840 ENSMUST00000159455 Gm4491 protein_coding Interval_128347 chr5 112660970 112661775 + 0 NA Intergenic Intergenic 12005 ENSMUSG00000105152.1 ENSMUSG00000105152 ENSMUST00000198371 Gm42864 lincRNA Interval_13182 chr10 12883217 12883621 + 0 NA Intergenic Intergenic 37331 ENSMUSG00000112698.1 ENSMUSG00000112698 ENSMUST00000219425 Gm7525 processed_pseudogene Interval_66448 chr16 33917196 33917459 + 0 NA intron (ENSMUSG00000022817.15, intron 5 of 10) protein_coding-intron (ENSMUSG00000022817.15, intron 9 of 14) 25386 ENSMUSG00000022817.15 ENSMUSG00000022817 ENSMUST00000231409 Itgb5 protein_coding Interval_128694 chr5 114757108 114757924 + 0 NA exon (ENSMUSG00000041890.17, exon 1 of 1) protein_coding-exon (ENSMUSG00000041890.17, exon 1 of 1) 4175 ENSMUSG00000041890.17 ENSMUSG00000041890 ENSMUST00000133096 Git2 protein_coding Interval_29383 chr11 83549999 83550316 + 0 NA Intergenic Intergenic -19644 ENSMUSG00000035042.2 ENSMUSG00000035042 ENSMUST00000125015 Ccl5 protein_coding Interval_145628 chr7 36382722 36383574 + 0 NA Intergenic Intergenic -47463 ENSMUSG00000093216.1 ENSMUSG00000093216 ENSMUST00000175475 Gm25247 miRNA Interval_130368 chr5 126764932 126765741 + 0 NA Intergenic Intergenic -38052 ENSMUSG00000106235.1 ENSMUSG00000106235 ENSMUST00000200003 Gm33347 lincRNA Interval_168978 chr9 89920784 89921310 + 0 NA intron (ENSMUSG00000032356.12, intron 1 of 1) protein_coding-intron (ENSMUSG00000032356.12, intron 1 of 26) 11135 ENSMUSG00000032356.12 ENSMUSG00000032356 ENSMUST00000190073 Rasgrf1 protein_coding Interval_153929 chr8 11266197 11266536 + 0 NA intron (ENSMUSG00000031502.11, intron 2 of 52) protein_coding-intron (ENSMUSG00000031502.11, intron 2 of 51) 24901 ENSMUSG00000109358.1 ENSMUSG00000109358 ENSMUST00000209007 Gm44716 TEC Interval_40427 chr12 104823127 104823460 + 0 NA intron (ENSMUSG00000021097.15, intron 1 of 14) protein_coding-intron (ENSMUSG00000021097.15, intron 1 of 12) -34078 ENSMUSG00000021101.2 ENSMUSG00000021101 ENSMUST00000021520 4930408O17Rik lincRNA Interval_36948 chr12 55536665 55537166 + 0 NA Intergenic Intergenic -28324 ENSMUSG00000063129.1 ENSMUSG00000063129 ENSMUST00000080123 Aldoart2 protein_coding Interval_75813 chr17 71577924 71578218 + 0 NA intron (ENSMUSG00000085492.7, intron 3 of 6) protein_coding-intron (ENSMUSG00000052525.14, intron 5 of 6) 20182 ENSMUSG00000085492.7 ENSMUSG00000085492 ENSMUST00000143828 Trmt61b antisense Interval_68295 chr16 72693270 72694235 + 0 NA intron (ENSMUSG00000022883.11, intron 1 of 1) protein_coding-intron (ENSMUSG00000022883.11, intron 1 of 28) -282597 ENSMUSG00000022883.11 ENSMUSG00000022883 ENSMUST00000232432 Robo1 protein_coding Interval_40273 chr12 103006919 103007660 + 0 NA intron (ENSMUSG00000021198.16, intron 4 of 51) protein_coding-intron (ENSMUSG00000021198.16, intron 1 of 46) 6222 ENSMUSG00000021198.16 ENSMUSG00000021198 ENSMUST00000178467 Unc79 protein_coding Interval_30708 chr11 96034324 96035302 + 0 NA promoter-TSS (ENSMUSG00000006058.10) protein_coding-promoter-TSS (ENSMUSG00000006058.10) -143 ENSMUSG00000006058.10 ENSMUSG00000006058 ENSMUST00000156394 Snf8 protein_coding Interval_36188 chr12 38433343 38433864 + 0 NA intron (ENSMUSG00000036095.11, intron 21 of 22) protein_coding-intron (ENSMUSG00000036095.11, intron 21 of 24) -64373 ENSMUSG00000113248.1 ENSMUSG00000113248 ENSMUST00000222381 Gm18338 processed_pseudogene Interval_67334 chr16 46500807 46501365 + 0 NA Intergenic Intergenic -4314 ENSMUSG00000022656.15 ENSMUSG00000022656 ENSMUST00000133935 Nectin3 protein_coding Interval_156043 chr8 43163177 43164138 + 0 NA exon (ENSMUSG00000109991.1, exon 3 of 3) processed_pseudogene-exon (ENSMUSG00000109991.1, exon 3 of 3) 4903 ENSMUSG00000109991.1 ENSMUSG00000109991 ENSMUST00000209609 Gm6284 processed_pseudogene Interval_148918 chr7 90041120 90043131 + 0 NA promoter-TSS (ENSMUSG00000108897.1) TEC-promoter-TSS (ENSMUSG00000108897.1) -572 ENSMUSG00000108897.1 ENSMUSG00000108897 ENSMUST00000208325 Gm44861 TEC Interval_138246 chr6 86570118 86571513 + 0 NA intron (ENSMUSG00000097048.7, intron 1 of 2) antisense-intron (ENSMUSG00000097048.7, intron 1 of 2) 3346 ENSMUSG00000093162.1 ENSMUSG00000093162 ENSMUST00000175421 Gm22184 miRNA Interval_62705 chr15 96372996 96373370 + 0 NA intron (ENSMUSG00000033237.19, intron 15 of 20) protein_coding-intron (ENSMUSG00000033237.19, intron 15 of 20) -5631 ENSMUSG00000033237.19 ENSMUSG00000033237 ENSMUST00000176739 Arid2 protein_coding Interval_51778 chr14 32152586 32152870 + 0 NA intron (ENSMUSG00000021907.13, intron 3 of 3) protein_coding-intron (ENSMUSG00000021907.13, intron 3 of 3) 3343 ENSMUSG00000115760.1 ENSMUSG00000115760 ENSMUST00000227860 Gm18909 processed_pseudogene Interval_151440 chr7 122459639 122460185 + 0 NA intron (ENSMUSG00000052889.11, intron 5 of 17) protein_coding-intron (ENSMUSG00000052889.11, intron 5 of 16) -3526 ENSMUSG00000108455.1 ENSMUSG00000108455 ENSMUST00000206563 Gm44745 TEC Interval_113544 chr4 56149553 56149871 + 0 NA Intergenic Intergenic -13228 ENSMUSG00000081290.1 ENSMUSG00000081290 ENSMUST00000117493 Gm12520 processed_pseudogene Interval_129974 chr5 123394183 123395683 + 0 NA exon (ENSMUSG00000038342.15, exon 1 of 17) protein_coding-exon (ENSMUSG00000038342.15, exon 1 of 17) 131 ENSMUSG00000086700.2 ENSMUSG00000086700 ENSMUST00000151096 Gm15747 antisense Interval_30149 chr11 89818461 89819390 + 0 NA intron (ENSMUSG00000047773.15, intron 2 of 21) protein_coding-intron (ENSMUSG00000047773.15, intron 2 of 21) 22341 ENSMUSG00000047773.15 ENSMUSG00000047773 ENSMUST00000207171 Ankfn1 protein_coding Interval_168840 chr9 87926390 87926586 + 0 NA Intergenic Intergenic -37901 ENSMUSG00000093937.1 ENSMUSG00000093937 ENSMUST00000180264 Gm25528 snoRNA Interval_165296 chr9 46107320 46107854 + 0 NA intron (ENSMUSG00000034135.15, intron 1 of 24) protein_coding-intron (ENSMUSG00000034135.15, intron 1 of 22) -15543 ENSMUSG00000034135.15 ENSMUSG00000034135 ENSMUST00000138338 Sik3 protein_coding Interval_169225 chr9 95649427 95649746 + 0 NA intron (ENSMUSG00000015354.8, intron 2 of 8) protein_coding-intron (ENSMUSG00000015354.8, intron 2 of 8) -1115 ENSMUSG00000086585.1 ENSMUSG00000086585 ENSMUST00000126025 Gm16126 antisense Interval_136833 chr6 61144089 61144362 + 0 NA Intergenic Intergenic 3682 ENSMUSG00000107652.1 ENSMUSG00000107652 ENSMUST00000203274 Gm43894 lincRNA Interval_26690 chr11 59746765 59747079 + 0 NA intron (ENSMUSG00000005417.17, intron 4 of 5) protein_coding-intron (ENSMUSG00000005417.17, intron 10 of 22) -6768 ENSMUSG00000086330.7 ENSMUSG00000086330 ENSMUST00000153431 1700007J10Rik processed_transcript Interval_138152 chr6 85510718 85513964 + 0 NA exon (ENSMUSG00000071341.4, exon 2 of 2) protein_coding-exon (ENSMUSG00000071341.4, exon 2 of 2) 1248 ENSMUSG00000071341.4 ENSMUSG00000071341 ENSMUST00000095759 Egr4 protein_coding Interval_63421 chr15 100968637 100970560 + 0 NA promoter-TSS (ENSMUSG00000023033.14) protein_coding-promoter-TSS (ENSMUSG00000023033.14) -524 ENSMUSG00000023033.14 ENSMUSG00000023033 ENSMUST00000201246 Scn8a protein_coding Interval_12649 chr10 4142732 4143976 + 0 NA intron (ENSMUSG00000040675.17, intron 26 of 27) protein_coding-intron (ENSMUSG00000040675.17, intron 26 of 27) -26533 ENSMUSG00000089473.1 ENSMUSG00000089473 ENSMUST00000158848 Gm25369 snoRNA Interval_18615 chr10 88494919 88496491 + 0 NA intron (ENSMUSG00000060002.14, intron 1 of 8) protein_coding-intron (ENSMUSG00000060002.14, intron 1 of 7) -19265 ENSMUSG00000060002.14 ENSMUSG00000060002 ENSMUST00000073783 Chpt1 protein_coding Interval_153848 chr8 9807802 9808747 + 0 NA intron (ENSMUSG00000109183.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000109183.1, intron 1 of 1) 8080 ENSMUSG00000109183.1 ENSMUSG00000109183 ENSMUST00000209080 Gm44761 lincRNA Interval_118506 chr4 132157061 132157297 + 0 NA Intergenic Intergenic -8295 ENSMUSG00000081394.1 ENSMUSG00000081394 ENSMUST00000117559 Gm13215 processed_pseudogene Interval_23432 chr11 22601988 22602531 + 0 NA Intergenic Intergenic -15149 ENSMUSG00000086256.1 ENSMUSG00000086256 ENSMUST00000142151 Gm12052 lincRNA Interval_44058 chr13 40626289 40626645 + 0 NA Intergenic Intergenic 18182 ENSMUSG00000114322.1 ENSMUSG00000114322 ENSMUST00000225346 Gm47041 TEC Interval_87906 chr19 57028661 57029298 + 0 NA Intergenic Intergenic -91741 ENSMUSG00000025083.18 ENSMUSG00000025083 ENSMUST00000132851 Afap1l2 protein_coding Interval_45169 chr13 52911148 52911958 + 0 NA exon (ENSMUSG00000021460.17, exon 4 of 4) protein_coding-exon (ENSMUSG00000021460.17, exon 4 of 4) 1393 ENSMUSG00000021460.17 ENSMUSG00000021460 ENSMUST00000151469 Auh protein_coding Interval_60467 chr15 74039943 74040201 + 0 NA Intergenic Intergenic -39159 ENSMUSG00000116256.1 ENSMUSG00000116256 ENSMUST00000230277 Gm32405 lincRNA Interval_167383 chr9 68016285 68016774 + 0 NA Intergenic Intergenic 9185 ENSMUSG00000111841.1 ENSMUSG00000111841 ENSMUST00000216827 Gm20745 lincRNA Interval_46673 chr13 68589541 68590047 + 0 NA promoter-TSS (ENSMUSG00000021532.11) protein_coding-promoter-TSS (ENSMUSG00000021532.11) 4928 ENSMUSG00000112985.1 ENSMUSG00000112985 ENSMUST00000223128 Gm48556 antisense Interval_84416 chr19 10747685 10748854 + 0 NA intron (ENSMUSG00000067577.8, intron 1 of 1) processed_transcript-intron (ENSMUSG00000067577.8, intron 1 of 3) -9267 ENSMUSG00000024669.8 ENSMUSG00000024669 ENSMUST00000237397 Cd5 protein_coding Interval_84675 chr19 14918374 14918618 + 0 NA Intergenic Intergenic 42270 ENSMUSG00000063586.1 ENSMUSG00000063586 ENSMUST00000072982 Gm5513 processed_pseudogene Interval_70254 chr17 7263981 7264730 + 0 NA intron (ENSMUSG00000023809.10, intron 2 of 6) protein_coding-intron (ENSMUSG00000023809.10, intron 10 of 20) 51491 ENSMUSG00000116935.1 ENSMUSG00000116935 ENSMUST00000231254 Gpr31a processed_pseudogene Interval_138025 chr6 84350178 84350469 + 0 NA Intergenic Intergenic 73515 ENSMUSG00000107797.1 ENSMUSG00000107797 ENSMUST00000203521 Gm10445 lincRNA Interval_153776 chr8 8421870 8422325 + 0 NA intron (ENSMUSG00000109127.1, intron 1 of 5) lincRNA-intron (ENSMUSG00000109127.1, intron 1 of 5) 33332 ENSMUSG00000108913.1 ENSMUSG00000108913 ENSMUST00000207080 Gm2448 processed_pseudogene Interval_126902 chr5 96923154 96923602 + 0 NA intron (ENSMUSG00000106357.1, intron 2 of 2) lincRNA-intron (ENSMUSG00000106357.1, intron 2 of 2) -1203 ENSMUSG00000105283.1 ENSMUSG00000105283 ENSMUST00000195935 Gm33370 lincRNA Interval_118219 chr4 129584554 129586010 + 0 NA Intergenic Intergenic -7825 ENSMUSG00000050493.8 ENSMUSG00000050493 ENSMUST00000052835 Fam167b protein_coding Interval_67902 chr16 59130355 59130718 + 0 NA Intergenic Intergenic -9467 ENSMUSG00000063020.2 ENSMUSG00000063020 ENSMUST00000072608 Olfr194 protein_coding Interval_99774 chr2 164828932 164829642 + 0 NA promoter-TSS (ENSMUSG00000017767.3) protein_coding-promoter-TSS (ENSMUSG00000017767.3) -759 ENSMUSG00000017767.3 ENSMUSG00000017767 ENSMUST00000017911 Spata25 protein_coding Interval_16078 chr10 60590944 60591516 + 0 NA intron (ENSMUSG00000012819.15, intron 7 of 7) protein_coding-intron (ENSMUSG00000012819.15, intron 5 of 66) 161553 ENSMUSG00000020100.15 ENSMUSG00000020100 ENSMUST00000144989 Slc29a3 protein_coding Interval_89673 chr2 24454518 24454715 + 0 NA intron (ENSMUSG00000085057.7, intron 3 of 5) protein_coding-intron (ENSMUSG00000026976.15, intron 2 of 11) 11767 ENSMUSG00000085057.7 ENSMUSG00000085057 ENSMUST00000187034 Gm13415 processed_transcript Interval_113045 chr4 47172327 47172708 + 0 NA TTS (ENSMUSG00000083491.1) processed_pseudogene-TTS (ENSMUSG00000083491.1) 848 ENSMUSG00000083491.1 ENSMUSG00000083491 ENSMUST00000118334 Gm12423 processed_pseudogene Interval_14709 chr10 39227528 39227894 + 0 NA Intergenic Intergenic -17335 ENSMUSG00000111008.1 ENSMUSG00000111008 ENSMUST00000213973 Gm31562 lincRNA Interval_165422 chr9 47732561 47732764 + 0 NA intron (ENSMUSG00000032076.20, intron 1 of 8) protein_coding-intron (ENSMUSG00000032076.20, intron 1 of 8) -38479 ENSMUSG00000110959.1 ENSMUSG00000110959 ENSMUST00000214736 Gm47198 TEC Interval_100424 chr2 168934711 168935828 + 0 NA exon (ENSMUSG00000027551.15, exon 5 of 6) protein_coding-exon (ENSMUSG00000027551.15, exon 5 of 6) 19997 ENSMUSG00000027551.15 ENSMUSG00000027551 ENSMUST00000136242 Zfp64 protein_coding Interval_2137 chr1 36645752 36646536 + 0 NA intron (ENSMUSG00000046337.17, intron 3 of 14) protein_coding-intron (ENSMUSG00000046337.17, intron 3 of 9) -17821 ENSMUSG00000077939.1 ENSMUSG00000077939 ENSMUST00000104746 Gm24133 miRNA Interval_47165 chr13 76844732 76845187 + 0 NA intron (ENSMUSG00000021596.16, intron 15 of 20) protein_coding-intron (ENSMUSG00000021596.16, intron 15 of 20) 19752 ENSMUSG00000021596.16 ENSMUSG00000021596 ENSMUST00000149028 Mctp1 protein_coding Interval_8005 chr1 135174542 135175413 + 0 NA Intergenic Intergenic -7296 ENSMUSG00000026424.8 ENSMUSG00000026424 ENSMUST00000027682 Gpr37l1 protein_coding Interval_83908 chr19 5503372 5504091 + 0 NA promoter-TSS (ENSMUSG00000100937.1) protein_coding-promoter-TSS (ENSMUSG00000100937.1) 56 ENSMUSG00000100937.1 ENSMUSG00000100937 ENSMUST00000189704 1700020D05Rik protein_coding Interval_120763 chr4 150522650 150524643 + 0 NA intron (ENSMUSG00000039852.17, intron 10 of 22) protein_coding-intron (ENSMUSG00000039852.17, intron 4 of 16) 44898 ENSMUSG00000085213.1 ENSMUSG00000085213 ENSMUST00000128800 Gm13091 antisense Interval_82081 chr18 67616172 67616420 + 0 NA Intergenic Intergenic 22693 ENSMUSG00000073542.3 ENSMUSG00000073542 ENSMUST00000237975 Cep76 protein_coding Interval_43210 chr13 25274708 25275748 + 0 NA Intergenic Intergenic -5258 ENSMUSG00000048978.14 ENSMUSG00000048978 ENSMUST00000126348 Nrsn1 protein_coding Interval_174667 chrX 162755974 162756455 + 0 NA Intergenic Intergenic 7658 ENSMUSG00000104536.1 ENSMUSG00000104536 ENSMUST00000200181 Gm23786 snoRNA Interval_75308 chr17 65810785 65811094 + 0 NA TTS (ENSMUSG00000061950.17) protein_coding-TTS (ENSMUSG00000061950.17) -18009 ENSMUSG00000061950.17 ENSMUSG00000061950 ENSMUST00000162703 Ppp4r1 protein_coding Interval_21004 chr10 123160645 123160982 + 0 NA TTS (ENSMUSG00000020124.10) protein_coding-TTS (ENSMUSG00000020124.10) 17871 ENSMUSG00000112879.1 ENSMUSG00000112879 ENSMUST00000219693 Gm47726 processed_pseudogene Interval_81948 chr18 66214423 66214665 + 0 NA intron (ENSMUSG00000117764.1, intron 1 of 1) protein_coding-intron (ENSMUSG00000046318.16, intron 2 of 11) 3744 ENSMUSG00000117764.1 ENSMUSG00000117764 ENSMUST00000236179 Gm50143 sense_intronic Interval_164847 chr9 42423278 42424249 + 0 NA intron (ENSMUSG00000037287.15, intron 7 of 7) protein_coding-intron (ENSMUSG00000037287.15, intron 7 of 7) -19089 ENSMUSG00000104589.1 ENSMUSG00000104589 ENSMUST00000196448 Gm44311 miRNA Interval_11275 chr1 180646993 180648192 + 0 NA intron (ENSMUSG00000058729.13, intron 1 of 2) protein_coding-intron (ENSMUSG00000058729.13, intron 1 of 11) -33295 ENSMUSG00000058729.13 ENSMUSG00000058729 ENSMUST00000194847 Lin9 protein_coding Interval_78926 chr18 21736085 21736585 + 0 NA Intergenic Intergenic -81617 ENSMUSG00000042514.11 ENSMUSG00000042514 ENSMUST00000122333 Klhl14 protein_coding Interval_174049 chrX 133132449 133133322 + 0 NA Intergenic Intergenic -37323 ENSMUSG00000082905.1 ENSMUSG00000082905 ENSMUST00000120761 Gm7823 processed_pseudogene Interval_56970 chr14 124407393 124407850 + 0 NA intron (ENSMUSG00000025551.13, intron 1 of 4) protein_coding-intron (ENSMUSG00000025551.13, intron 1 of 4) 8930 ENSMUSG00000115472.1 ENSMUSG00000115472 ENSMUST00000228023 Gm49070 processed_pseudogene Interval_117669 chr4 125473055 125473327 + 0 NA Intergenic Intergenic -17509 ENSMUSG00000001985.9 ENSMUSG00000001985 ENSMUST00000030676 Grik3 protein_coding Interval_144778 chr7 28191696 28192206 + 0 NA Intergenic Intergenic 12457 ENSMUSG00000002409.18 ENSMUSG00000002409 ENSMUST00000172467 Dyrk1b protein_coding Interval_73709 chr17 42908861 42909731 + 0 NA Intergenic Intergenic -78266 ENSMUSG00000061665.7 ENSMUSG00000061665 ENSMUST00000233626 Cd2ap protein_coding Interval_148765 chr7 86488732 86489086 + 0 NA exon (ENSMUSG00000062878.3, exon 1 of 1) protein_coding-exon (ENSMUSG00000062878.3, exon 1 of 1) 3569 ENSMUSG00000062878.3 ENSMUSG00000062878 ENSMUST00000077800 Olfr298 protein_coding Interval_150473 chr7 110969041 110969397 + 0 NA intron (ENSMUSG00000005611.15, intron 1 of 4) protein_coding-intron (ENSMUSG00000005611.15, intron 1 of 20) 12985 ENSMUSG00000005611.15 ENSMUSG00000005611 ENSMUST00000154466 Mrvi1 protein_coding Interval_51498 chr14 28528169 28529598 + 0 NA Intergenic Intergenic -17491 ENSMUSG00000097002.1 ENSMUSG00000097002 ENSMUST00000180668 Gm2670 antisense Interval_97444 chr2 136531793 136532854 + 0 NA promoter-TSS (ENSMUSG00000074771.10) protein_coding-promoter-TSS (ENSMUSG00000074771.10) 16808 ENSMUSG00000074771.10 ENSMUSG00000074771 ENSMUST00000138967 Ankef1 protein_coding Interval_129726 chr5 121989996 121991208 + 0 NA intron (ENSMUSG00000042589.18, intron 1 of 6) protein_coding-intron (ENSMUSG00000042589.18, intron 2 of 22) -34728 ENSMUSG00000105795.1 ENSMUSG00000105795 ENSMUST00000198001 Gm3970 antisense Interval_115351 chr4 97771694 97773811 + 0 NA promoter-TSS (ENSMUSG00000028565.18) protein_coding-promoter-TSS (ENSMUSG00000028565.18) 18 ENSMUSG00000028565.18 ENSMUSG00000028565 ENSMUST00000133011 Nfia protein_coding Interval_171351 chr9 116807461 116808014 + 0 NA intron (ENSMUSG00000039607.17, intron 7 of 15) protein_coding-intron (ENSMUSG00000039607.17, intron 5 of 12) -251421 ENSMUSG00000092184.1 ENSMUSG00000092184 ENSMUST00000172565 Gm18489 processed_pseudogene Interval_92068 chr2 52973374 52973724 + 0 NA intron (ENSMUSG00000036053.17, intron 1 of 26) protein_coding-intron (ENSMUSG00000036053.17, intron 1 of 26) 115689 ENSMUSG00000036053.17 ENSMUSG00000036053 ENSMUST00000050719 Fmnl2 protein_coding Interval_91647 chr2 45225205 45225710 + 0 NA Intergenic Intergenic -55267 ENSMUSG00000098320.1 ENSMUSG00000098320 ENSMUST00000183957 Vis1 misc_RNA Interval_60362 chr15 73169828 73170021 + 0 NA intron (ENSMUSG00000036698.11, intron 1 of 18) protein_coding-intron (ENSMUSG00000036698.11, intron 1 of 18) 7923 ENSMUSG00000036698.11 ENSMUSG00000036698 ENSMUST00000230464 Ago2 protein_coding Interval_94845 chr2 96671518 96671722 + 0 NA intron (ENSMUSG00000050587.14, intron 2 of 7) protein_coding-intron (ENSMUSG00000050587.14, intron 2 of 6) -328004 ENSMUSG00000091288.1 ENSMUSG00000091288 ENSMUST00000171924 Gm17075 processed_pseudogene Interval_12539 chr1 194993749 194994119 + 0 NA exon (ENSMUSG00000104525.1, exon 1 of 1) TEC-exon (ENSMUSG00000104525.1, exon 1 of 1) 676 ENSMUSG00000104525.1 ENSMUSG00000104525 ENSMUST00000192325 Gm37334 TEC Interval_126302 chr5 86340251 86340482 + 0 NA intron (ENSMUSG00000061259.11, intron 1 of 9) protein_coding-intron (ENSMUSG00000061259.11, intron 1 of 9) -12630 ENSMUSG00000061259.11 ENSMUSG00000061259 ENSMUST00000031175 Tmprss11d protein_coding Interval_158408 chr8 83573321 83573962 + 0 NA promoter-TSS (ENSMUSG00000031708.17) protein_coding-promoter-TSS (ENSMUSG00000031708.17) 1201 ENSMUSG00000031708.17 ENSMUSG00000031708 ENSMUST00000212285 Tecr protein_coding Interval_67182 chr16 44181846 44182907 + 0 NA intron (ENSMUSG00000068284.14, intron 1 of 7) protein_coding-intron (ENSMUSG00000068284.14, intron 1 of 6) 8979 ENSMUSG00000068284.14 ENSMUSG00000068284 ENSMUST00000169582 Usf3 protein_coding Interval_56076 chr14 105390442 105390847 + 0 NA Intergenic Intergenic -36915 ENSMUSG00000115548.1 ENSMUSG00000115548 ENSMUST00000226670 5430440P10Rik lincRNA Interval_78225 chr18 10371747 10372487 + 0 NA intron (ENSMUSG00000042942.18, intron 1 of 8) protein_coding-intron (ENSMUSG00000042942.18, intron 1 of 32) -6044 ENSMUSG00000105513.1 ENSMUSG00000105513 ENSMUST00000198810 Gm44409 miRNA Interval_59782 chr15 59204257 59204531 + 0 NA Intergenic Intergenic -6514 ENSMUSG00000025922.9 ENSMUSG00000025922 ENSMUST00000027054 Rpl7-ps8 processed_pseudogene Interval_51817 chr14 32462714 32465828 + 0 NA promoter-TSS (ENSMUSG00000097794.2) antisense-promoter-TSS (ENSMUSG00000097794.2) 579 ENSMUSG00000100241.1 ENSMUSG00000100241 ENSMUST00000191501 Slc18a3 protein_coding Interval_112358 chr4 40818214 40818822 + 0 NA intron (ENSMUSG00000028413.13, intron 2 of 4) protein_coding-intron (ENSMUSG00000028413.13, intron 2 of 5) 31620 ENSMUSG00000096377.1 ENSMUSG00000096377 ENSMUST00000177794 Mir5123 miRNA Interval_135074 chr6 35190464 35191080 + 0 NA intron (ENSMUSG00000038759.15, intron 6 of 14) protein_coding-intron (ENSMUSG00000038759.15, intron 6 of 42) 13156 ENSMUSG00000038759.15 ENSMUSG00000038759 ENSMUST00000200739 Nup205 protein_coding Interval_115048 chr4 88863076 88864412 + 0 NA Intergenic Intergenic 4636 ENSMUSG00000054351.2 ENSMUSG00000054351 ENSMUST00000057837 4930553M12Rik lincRNA Interval_21483 chr10 128851859 128852080 + 0 NA intron (ENSMUSG00000078427.3, intron 9 of 11) protein_coding-intron (ENSMUSG00000078427.3, intron 8 of 10) 30037 ENSMUSG00000078427.3 ENSMUSG00000078427 ENSMUST00000220381 Sarnp protein_coding Interval_127278 chr5 102061915 102064186 + 0 NA intron (ENSMUSG00000043940.15, intron 1 of 15) protein_coding-intron (ENSMUSG00000043940.15, intron 1 of 66) -4981 ENSMUSG00000105761.1 ENSMUSG00000105761 ENSMUST00000197792 Gm43787 TEC Interval_168945 chr9 89461009 89462016 + 0 NA Intergenic Intergenic 98872 ENSMUSG00000111806.1 ENSMUSG00000111806 ENSMUST00000217127 Gm47403 lincRNA Interval_66394 chr16 33583686 33585290 + 0 NA intron (ENSMUSG00000035506.16, intron 4 of 10) protein_coding-intron (ENSMUSG00000035506.16, intron 4 of 12) -31902 ENSMUSG00000035506.16 ENSMUSG00000035506 ENSMUST00000149291 Slc12a8 protein_coding Interval_145993 chr7 42913671 42914057 + 0 NA intron (ENSMUSG00000090751.2, intron 3 of 3) protein_coding-intron (ENSMUSG00000090751.2, intron 5 of 5) 19958 ENSMUSG00000090751.2 ENSMUSG00000090751 ENSMUST00000232761 Vmn2r63 protein_coding Interval_110328 chr3 156966722 156967769 + 0 NA intron (ENSMUSG00000040037.13, intron 2 of 2) protein_coding-intron (ENSMUSG00000040037.13, intron 2 of 6) -33172 ENSMUSG00000106018.1 ENSMUSG00000106018 ENSMUST00000198749 Gm43527 TEC Interval_125829 chr5 74796499 74796885 + 0 NA Intergenic Intergenic 46810 ENSMUSG00000106987.1 ENSMUSG00000106987 ENSMUST00000202942 Gm42575 lincRNA Interval_41766 chr12 118871790 118872163 + 0 NA intron (ENSMUSG00000072791.11, intron 26 of 27) protein_coding-intron (ENSMUSG00000072791.11, intron 26 of 27) 18783 ENSMUSG00000072791.11 ENSMUSG00000072791 ENSMUST00000100982 Abcb5 protein_coding Interval_175 JH792827.1 16426 16697 + 0 NA NA NA NA NA Interval_33286 chr11 115714736 115715207 + 0 NA Intergenic Intergenic 9837 ENSMUSG00000083394.2 ENSMUSG00000083394 ENSMUST00000118352 Gm11703 processed_pseudogene Interval_158056 chr8 78434725 78438431 + 0 NA promoter-TSS (ENSMUSG00000031688.4) protein_coding-promoter-TSS (ENSMUSG00000031688.4) 67 ENSMUSG00000031688.4 ENSMUSG00000031688 ENSMUST00000034115 Pou4f2 protein_coding Interval_57965 chr15 25769631 25770557 + 0 NA intron (ENSMUSG00000022272.17, intron 1 of 2) protein_coding-intron (ENSMUSG00000022272.17, intron 1 of 20) 1538 ENSMUSG00000022272.17 ENSMUSG00000022272 ENSMUST00000145587 Myo10 protein_coding Interval_68586 chr16 79734609 79735240 + 0 NA Intergenic Intergenic 83397 ENSMUSG00000102791.1 ENSMUSG00000102791 ENSMUST00000195074 Gm37709 TEC Interval_124583 chr5 51813915 51814177 + 0 NA Intergenic Intergenic 44729 ENSMUSG00000105663.1 ENSMUSG00000105663 ENSMUST00000195938 Gm43606 TEC Interval_60943 chr15 78064460 78064742 + 0 NA intron (ENSMUSG00000019146.2, intron 1 of 3) protein_coding-intron (ENSMUSG00000019146.2, intron 1 of 3) -55105 ENSMUSG00000092375.1 ENSMUSG00000092375 ENSMUST00000174277 A730060N03Rik antisense Interval_40207 chr12 102552160 102552406 + 0 NA Intergenic Intergenic -5785 ENSMUSG00000021194.6 ENSMUSG00000021194 ENSMUST00000223100 Chga protein_coding Interval_118008 chr4 127935495 127935878 + 0 NA intron (ENSMUSG00000028813.2, intron 6 of 6) protein_coding-intron (ENSMUSG00000028813.2, intron 6 of 6) 35265 ENSMUSG00000028813.2 ENSMUSG00000028813 ENSMUST00000030614 CK137956 protein_coding Interval_55807 chr14 100361521 100362460 + 0 NA Intergenic Intergenic -56493 ENSMUSG00000094585.1 ENSMUSG00000094585 ENSMUST00000104165 Gm26367 snoRNA Interval_42378 chr13 12468808 12469129 + 0 NA Intergenic Intergenic -12445 ENSMUSG00000057554.13 ENSMUSG00000057554 ENSMUST00000152478 Lgals8 protein_coding Interval_92671 chr2 62368778 62369221 + 0 NA intron (ENSMUSG00000035000.8, intron 3 of 3) protein_coding-intron (ENSMUSG00000035000.8, intron 10 of 25) 11928 ENSMUSG00000087518.1 ENSMUSG00000087518 ENSMUST00000136879 Gm13561 antisense Interval_149552 chr7 99518526 99519538 + 0 NA Intergenic Intergenic -16434 ENSMUSG00000018909.15 ENSMUSG00000018909 ENSMUST00000162290 Arrb1 protein_coding Interval_13831 chr10 23475703 23476048 + 0 NA Intergenic Intergenic -125089 ENSMUSG00000010461.15 ENSMUSG00000010461 ENSMUST00000218956 Eya4 protein_coding Interval_99154 chr2 157540193 157540517 + 0 NA Intergenic Intergenic 5114 ENSMUSG00000087445.1 ENSMUSG00000087445 ENSMUST00000155674 Gm14286 antisense Interval_47950 chr13 94569743 94570109 + 0 NA Intergenic Intergenic -49354 ENSMUSG00000103438.1 ENSMUSG00000103438 ENSMUST00000191800 Gm36991 TEC Interval_133657 chr6 8130773 8131278 + 0 NA intron (ENSMUSG00000068794.7, intron 11 of 34) protein_coding-intron (ENSMUSG00000068794.7, intron 11 of 34) 49149 ENSMUSG00000068794.7 ENSMUSG00000068794 ENSMUST00000213284 Col28a1 protein_coding Interval_62316 chr15 89915962 89916195 + 0 NA Intergenic Intergenic -27026 ENSMUSG00000096784.1 ENSMUSG00000096784 ENSMUST00000178305 Gm24643 miRNA Interval_34556 chr12 5083808 5084029 + 0 NA exon (ENSMUSG00000020627.10, exon 13 of 14) protein_coding-exon (ENSMUSG00000020627.10, exon 13 of 14) -16470 ENSMUSG00000112723.1 ENSMUSG00000112723 ENSMUST00000219035 Gm9110 processed_pseudogene Interval_78178 chr18 9839490 9839915 + 0 NA intron (ENSMUSG00000036103.9, intron 2 of 9) protein_coding-intron (ENSMUSG00000036103.9, intron 2 of 10) -12583 ENSMUSG00000092816.1 ENSMUSG00000092816 ENSMUST00000175075 Gm23637 miRNA Interval_90787 chr2 32610769 32611000 + 0 NA intron (ENSMUSG00000026811.18, intron 1 of 1) protein_coding-intron (ENSMUSG00000026811.18, intron 2 of 5) 3844 ENSMUSG00000026811.18 ENSMUSG00000026811 ENSMUST00000128811 St6galnac6 protein_coding Interval_104861 chr3 76131791 76132435 + 0 NA intron (ENSMUSG00000034098.14, intron 1 of 15) protein_coding-intron (ENSMUSG00000034098.14, intron 1 of 15) -90390 ENSMUSG00000104223.1 ENSMUSG00000104223 ENSMUST00000194986 Gm18428 processed_pseudogene Interval_143413 chr7 6526116 6526767 + 0 NA Intergenic Intergenic -3607 ENSMUSG00000048067.8 ENSMUSG00000048067 ENSMUST00000207075 Olfr1349 protein_coding Interval_113485 chr4 55305573 55307778 + 0 NA Intergenic Intergenic -6830 ENSMUSG00000077403.2 ENSMUSG00000077403 ENSMUST00000104215 Gm25419 snoRNA Interval_38011 chr12 73932769 73933025 + 0 NA exon (ENSMUSG00000021109.13, exon 6 of 6) protein_coding-exon (ENSMUSG00000021109.13, exon 6 of 6) -4756 ENSMUSG00000114046.1 ENSMUSG00000114046 ENSMUST00000221833 Snapc1l protein_coding Interval_138934 chr6 93636687 93637658 + 0 NA Intergenic Intergenic 13053 ENSMUSG00000107739.1 ENSMUSG00000107739 ENSMUST00000203479 Gm7812 processed_pseudogene Interval_74100 chr17 46571163 46571421 + 0 NA intron (ENSMUSG00000023972.10, intron 2 of 4) protein_coding-intron (ENSMUSG00000023972.10, intron 17 of 19) 1658 ENSMUSG00000023972.10 ENSMUSG00000023972 ENSMUST00000044442 Ptk7 protein_coding Interval_105797 chr3 89378288 89379169 + 0 NA exon (ENSMUSG00000028042.15, exon 3 of 3) protein_coding-exon (ENSMUSG00000028042.15, exon 3 of 3) 14650 ENSMUSG00000028042.15 ENSMUSG00000028042 ENSMUST00000139094 Zbtb7b protein_coding Interval_72843 chr17 32519687 32520397 + 0 NA intron (ENSMUSG00000091586.2, intron 3 of 12) protein_coding-intron (ENSMUSG00000091586.2, intron 3 of 12) 13992 ENSMUSG00000091586.2 ENSMUSG00000091586 ENSMUST00000236129 Cyp4f17 protein_coding Interval_115524 chr4 100141946 100142199 + 0 NA intron (ENSMUSG00000035305.5, intron 1 of 8) protein_coding-intron (ENSMUSG00000035305.5, intron 1 of 8) 22451 ENSMUSG00000086385.1 ENSMUSG00000086385 ENSMUST00000134206 Gm12701 sense_intronic Interval_172029 chr9 123663600 123664477 + 0 NA intron (ENSMUSG00000036814.13, intron 1 of 4) protein_coding-intron (ENSMUSG00000036814.13, intron 2 of 10) -14058 ENSMUSG00000090608.1 ENSMUSG00000090608 ENSMUST00000170214 Gm17200 lincRNA Interval_135461 chr6 39445614 39446706 + 0 NA Intergenic Intergenic -23741 ENSMUSG00000064900.1 ENSMUSG00000064900 ENSMUST00000082966 Gm25402 snoRNA Interval_49042 chr13 107207771 107208170 + 0 NA Intergenic Intergenic 72221 ENSMUSG00000114475.1 ENSMUSG00000114475 ENSMUST00000223896 Gm2726 processed_pseudogene Interval_104179 chr3 59864344 59864774 + 0 NA intron (ENSMUSG00000095522.2, intron 1 of 4) protein_coding-intron (ENSMUSG00000095522.2, intron 1 of 4) 3508 ENSMUSG00000095522.2 ENSMUSG00000095522 ENSMUST00000179799 Aadacl2fm3 protein_coding Interval_2639 chr1 42791017 42791949 + 0 NA Intergenic Intergenic 40771 ENSMUSG00000099784.1 ENSMUSG00000099784 ENSMUST00000188773 Dalir lincRNA Interval_112447 chr4 41329258 41330188 + 0 NA Intergenic Intergenic -14834 ENSMUSG00000028436.8 ENSMUSG00000028436 ENSMUST00000030145 Dcaf12 protein_coding Interval_46014 chr13 60110258 60110819 + 0 NA exon (ENSMUSG00000114531.1, exon 2 of 3) lincRNA-exon (ENSMUSG00000114531.1, exon 2 of 3) 1423 ENSMUSG00000114531.1 ENSMUSG00000114531 ENSMUST00000225586 A530065N20Rik lincRNA Interval_26689 chr11 59739789 59740730 + 0 NA promoter-TSS (ENSMUSG00000086330.7) processed_transcript-promoter-TSS (ENSMUSG00000086330.7) -105 ENSMUSG00000086330.7 ENSMUSG00000086330 ENSMUST00000153431 1700007J10Rik processed_transcript Interval_17615 chr10 78217948 78218554 + 0 NA intron (ENSMUSG00000000374.8, intron 4 of 4) protein_coding-intron (ENSMUSG00000000374.8, intron 5 of 22) -19152 ENSMUSG00000000374.8 ENSMUSG00000000374 ENSMUST00000217980 Trappc10 protein_coding Interval_61232 chr15 80122516 80122790 + 0 NA Intergenic Intergenic -10474 ENSMUSG00000022414.8 ENSMUSG00000022414 ENSMUST00000229320 Tab1 protein_coding Interval_125325 chr5 66205654 66206158 + 0 NA Intergenic Intergenic -4580 ENSMUSG00000084108.2 ENSMUSG00000084108 ENSMUST00000120182 Gm15794 processed_pseudogene Interval_162434 chr8 128694249 128694632 + 0 NA intron (ENSMUSG00000025809.15, intron 1 of 3) protein_coding-intron (ENSMUSG00000025809.15, intron 1 of 15) -29893 ENSMUSG00000025809.15 ENSMUSG00000025809 ENSMUST00000149116 Itgb1 protein_coding Interval_76044 chr17 74546792 74547184 + 0 NA intron (ENSMUSG00000024073.16, intron 2 of 72) protein_coding-intron (ENSMUSG00000024073.16, intron 2 of 72) -19344 ENSMUSG00000117358.1 ENSMUSG00000117358 ENSMUST00000234285 Gm31645 processed_transcript Interval_112974 chr4 46545544 46545859 + 0 NA exon (ENSMUSG00000028337.14, exon 7 of 13) protein_coding-exon (ENSMUSG00000028337.14, exon 7 of 13) -9579 ENSMUSG00000039853.18 ENSMUSG00000039853 ENSMUST00000142606 Trim14 protein_coding Interval_19680 chr10 107813994 107814189 + 0 NA intron (ENSMUSG00000091455.4, intron 29 of 57) protein_coding-intron (ENSMUSG00000091455.4, intron 29 of 57) -94064 ENSMUSG00000035916.8 ENSMUSG00000035916 ENSMUST00000218399 Ptprq protein_coding Interval_108142 chr3 121846755 121847567 + 0 NA Intergenic Intergenic -15681 ENSMUSG00000104595.1 ENSMUSG00000104595 ENSMUST00000198469 Gm42593 processed_pseudogene Interval_171260 chr9 115723258 115724912 + 0 NA Intergenic Intergenic 43342 ENSMUSG00000110905.1 ENSMUSG00000110905 ENSMUST00000215982 Gm48007 lincRNA Interval_87094 chr19 46069216 46069642 + 0 NA TTS (ENSMUSG00000055491.14) protein_coding-TTS (ENSMUSG00000055491.14) -6560 ENSMUSG00000015176.11 ENSMUSG00000015176 ENSMUST00000224490 Nolc1 protein_coding Interval_97079 chr2 131072802 131073302 + 0 NA intron (ENSMUSG00000027322.11, intron 16 of 16) protein_coding-intron (ENSMUSG00000027322.11, intron 16 of 20) 13713 ENSMUSG00000027322.11 ENSMUSG00000027322 ENSMUST00000110226 Siglec1 protein_coding Interval_87116 chr19 46242604 46242816 + 0 NA intron (ENSMUSG00000025224.16, intron 3 of 18) protein_coding-intron (ENSMUSG00000025224.16, intron 3 of 39) 24959 ENSMUSG00000086816.1 ENSMUSG00000086816 ENSMUST00000130184 Gm16726 antisense Interval_134704 chr6 30526286 30528675 + 0 NA Intergenic Intergenic 13782 ENSMUSG00000029784.13 ENSMUSG00000029784 ENSMUST00000131485 Ssmem1 protein_coding Interval_118544 chr4 132397939 132398998 + 0 NA promoter-TSS (ENSMUSG00000066043.13) protein_coding-promoter-TSS (ENSMUSG00000066043.13) -9841 ENSMUSG00000096350.1 ENSMUSG00000096350 ENSMUST00000175120 Gm25707 miRNA Interval_5509 chr1 89439552 89439764 + 0 NA Intergenic Intergenic -33525 ENSMUSG00000099938.1 ENSMUSG00000099938 ENSMUST00000186258 C030007H22Rik lincRNA Interval_167884 chr9 73471401 73471728 + 0 NA Intergenic Intergenic 82306 ENSMUSG00000103832.1 ENSMUSG00000103832 ENSMUST00000195250 Gm37611 TEC Interval_139366 chr6 99502419 99502630 + 0 NA intron (ENSMUSG00000030068.4, intron 1 of 1) protein_coding-intron (ENSMUSG00000030068.4, intron 3 of 5) -17822 ENSMUSG00000088699.1 ENSMUSG00000088699 ENSMUST00000158074 Gm22328 miRNA Interval_64114 chr16 8494210 8494844 + 0 NA Intergenic Intergenic -13786 ENSMUSG00000077557.1 ENSMUSG00000077557 ENSMUST00000104369 Gm23706 snoRNA Interval_143642 chr7 13672580 13672867 + 0 NA Intergenic Intergenic 18727 ENSMUSG00000099400.1 ENSMUSG00000099400 ENSMUST00000187624 Kat6b-ps1 processed_pseudogene Interval_116151 chr4 108168918 108169699 + 0 NA promoter-TSS (ENSMUSG00000028601.18) protein_coding-promoter-TSS (ENSMUSG00000028601.18) -3355 ENSMUSG00000028601.18 ENSMUSG00000028601 ENSMUST00000106691 Echdc2 protein_coding Interval_69634 chr16 94758266 94761294 + 0 NA intron (ENSMUSG00000043301.16, intron 4 of 4) protein_coding-intron (ENSMUSG00000043301.16, intron 4 of 4) 37886 ENSMUSG00000116641.1 ENSMUSG00000116641 ENSMUST00000232585 Gm41505 antisense Interval_150593 chr7 112697453 112697926 + 0 NA intron (ENSMUSG00000055320.18, intron 2 of 2) protein_coding-intron (ENSMUSG00000055320.18, intron 1 of 13) -16262 ENSMUSG00000106046.1 ENSMUSG00000106046 ENSMUST00000199696 Gm44462 miRNA Interval_21152 chr10 126933283 126933661 + 0 NA Intergenic Intergenic -24551 ENSMUSG00000112035.1 ENSMUSG00000112035 ENSMUST00000217769 Gm49335 lincRNA Interval_1415 chr1 21629976 21630173 + 0 NA intron (ENSMUSG00000028033.16, intron 1 of 11) protein_coding-intron (ENSMUSG00000028033.16, intron 1 of 13) -117018 ENSMUSG00000082935.3 ENSMUSG00000082935 ENSMUST00000119064 Gm7658 processed_pseudogene Interval_152443 chr7 133050691 133050951 + 0 NA intron (ENSMUSG00000030970.16, intron 3 of 3) protein_coding-intron (ENSMUSG00000030970.16, intron 2 of 10) -67269 ENSMUSG00000085663.1 ENSMUSG00000085663 ENSMUST00000131085 Gm15718 antisense Interval_71919 chr17 27004374 27005459 + 0 NA intron (ENSMUSG00000117819.1, intron 2 of 8) protein_coding-intron (ENSMUSG00000117819.1, intron 2 of 8) 23671 ENSMUSG00000057789.14 ENSMUSG00000057789 ENSMUST00000143158 Bak1 protein_coding Interval_26578 chr11 59010013 59010882 + 0 NA exon (ENSMUSG00000061462.18, exon 90 of 115) protein_coding-exon (ENSMUSG00000061462.18, exon 90 of 115) 7537 ENSMUSG00000072902.4 ENSMUSG00000072902 ENSMUST00000101162 Gm10435 antisense Interval_40830 chr12 108721130 108721841 + 0 NA TTS (ENSMUSG00000093173.1) miRNA-TTS (ENSMUSG00000093173.1) 439 ENSMUSG00000093173.1 ENSMUSG00000093173 ENSMUST00000175432 Gm23872 miRNA Interval_28280 chr11 74863539 74863888 + 0 NA intron (ENSMUSG00000038351.14, intron 11 of 23) protein_coding-intron (ENSMUSG00000038351.14, intron 11 of 22) 4481 ENSMUSG00000098317.1 ENSMUSG00000098317 ENSMUST00000184562 Mir6926 miRNA Interval_133420 chr6 4930250 4930951 + 0 NA intron (ENSMUSG00000032827.15, intron 1 of 17) protein_coding-intron (ENSMUSG00000032827.15, intron 2 of 15) -11547 ENSMUSG00000097385.1 ENSMUSG00000097385 ENSMUST00000181178 Gm26814 TEC Interval_117406 chr4 123528916 123529562 + 0 NA intron (ENSMUSG00000028649.21, intron 5 of 9) protein_coding-intron (ENSMUSG00000028649.21, intron 5 of 92) 39008 ENSMUSG00000089588.1 ENSMUSG00000089588 ENSMUST00000158963 Gm23548 misc_RNA Interval_36631 chr12 51655965 51656395 + 0 NA intron (ENSMUSG00000020954.16, intron 3 of 15) protein_coding-intron (ENSMUSG00000020954.16, intron 3 of 17) -12382 ENSMUSG00000020954.16 ENSMUSG00000020954 ENSMUST00000218212 Strn3 protein_coding Interval_3494 chr1 58957954 58958389 + 0 NA intron (ENSMUSG00000026028.12, intron 1 of 1) protein_coding-intron (ENSMUSG00000026028.12, intron 1 of 15) -15351 ENSMUSG00000026027.13 ENSMUSG00000026027 ENSMUST00000152318 Stradb protein_coding Interval_106439 chr3 96300781 96301555 + 0 NA Intergenic Intergenic -7235 ENSMUSG00000015947.10 ENSMUSG00000015947 ENSMUST00000200420 Fcgr1 protein_coding Interval_172043 chr9 123828972 123829391 + 0 NA exon (ENSMUSG00000025241.16, exon 9 of 19) protein_coding-exon (ENSMUSG00000025241.16, exon 9 of 19) 15425 ENSMUSG00000025241.16 ENSMUSG00000025241 ENSMUST00000216136 Fyco1 protein_coding Interval_45538 chr13 55708762 55708964 + 0 NA Intergenic Intergenic -8976 ENSMUSG00000021497.10 ENSMUSG00000021497 ENSMUST00000223649 Txndc15 protein_coding Interval_98072 chr2 147469689 147470949 + 0 NA Intergenic Intergenic -67057 ENSMUSG00000083126.1 ENSMUSG00000083126 ENSMUST00000118814 Gm14109 processed_pseudogene Interval_108548 chr3 128471065 128471345 + 0 NA Intergenic Intergenic -69167 ENSMUSG00000065248.1 ENSMUSG00000065248 ENSMUST00000083314 Gm22293 snoRNA Interval_69028 chr16 90207859 90208122 + 0 NA Intergenic Intergenic 9842 ENSMUSG00000116829.1 ENSMUSG00000116829 ENSMUST00000231225 Gm49704 processed_pseudogene Interval_129810 chr5 122484672 122484910 + 0 NA exon (ENSMUSG00000105434.1, exon 1 of 1) TEC-exon (ENSMUSG00000105434.1, exon 1 of 1) 208 ENSMUSG00000105434.1 ENSMUSG00000105434 ENSMUST00000197944 Gm43359 TEC Interval_88491 chr2 5599897 5601924 + 0 NA intron (ENSMUSG00000039145.16, intron 1 of 1) protein_coding-intron (ENSMUSG00000039145.16, intron 1 of 10) -2661 ENSMUSG00000082013.1 ENSMUSG00000082013 ENSMUST00000117145 Gm13216 processed_pseudogene Interval_59121 chr15 44363912 44365592 + 0 NA TTS (ENSMUSG00000077181.1) snoRNA-TTS (ENSMUSG00000077181.1) 667 ENSMUSG00000077181.1 ENSMUSG00000077181 ENSMUST00000103993 Gm25093 snoRNA Interval_100171 chr2 167449882 167451379 + 0 NA promoter-TSS (ENSMUSG00000039463.14) protein_coding-promoter-TSS (ENSMUSG00000039463.14) -425 ENSMUSG00000039463.14 ENSMUSG00000039463 ENSMUST00000148454 Slc9a8 protein_coding Interval_14735 chr10 39498199 39498911 + 0 NA intron (ENSMUSG00000019843.14, intron 2 of 2) protein_coding-intron (ENSMUSG00000019843.14, intron 3 of 13) 59507 ENSMUSG00000087014.1 ENSMUSG00000087014 ENSMUST00000153722 Gm16364 antisense Interval_49798 chr13 115591003 115592291 + 0 NA Intergenic Intergenic -61875 ENSMUSG00000114551.1 ENSMUSG00000114551 ENSMUST00000225901 Gm6035 processed_pseudogene Interval_156641 chr8 56243116 56243896 + 0 NA Intergenic Intergenic -51079 ENSMUSG00000031613.9 ENSMUSG00000031613 ENSMUST00000034026 Hpgd protein_coding Interval_142975 chr6 147911469 147911995 + 0 NA Intergenic Intergenic 135607 ENSMUSG00000086777.3 ENSMUSG00000086777 ENSMUST00000149815 Far2os2 antisense Interval_150479 chr7 111028460 111029449 + 0 NA promoter-TSS (ENSMUSG00000005609.16) protein_coding-promoter-TSS (ENSMUSG00000005609.16) -24836 ENSMUSG00000005609.16 ENSMUSG00000005609 ENSMUST00000209912 Ctr9 protein_coding Interval_67281 chr16 45348519 45350141 + 0 NA Intergenic Intergenic 59677 ENSMUSG00000022661.14 ENSMUSG00000022661 ENSMUST00000172091 Cd200 protein_coding Interval_77941 chr18 5964491 5964781 + 0 NA intron (ENSMUSG00000117508.1, intron 4 of 4) lincRNA-intron (ENSMUSG00000117508.1, intron 4 of 4) 19453 ENSMUSG00000117508.1 ENSMUSG00000117508 ENSMUST00000234953 Gm34804 lincRNA Interval_157865 chr8 75064515 75064825 + 0 NA intron (ENSMUSG00000042870.15, intron 2 of 4) protein_coding-intron (ENSMUSG00000042870.15, intron 13 of 15) -14471 ENSMUSG00000110429.1 ENSMUSG00000110429 ENSMUST00000212025 Gm2059 processed_pseudogene Interval_58444 chr15 34559232 34560176 + 0 NA Intergenic Intergenic 23067 ENSMUSG00000038879.8 ENSMUSG00000038879 ENSMUST00000227126 Nipal2 protein_coding Interval_155091 chr8 26361826 26363075 + 0 NA Intergenic Intergenic -50116 ENSMUSG00000110229.1 ENSMUSG00000110229 ENSMUST00000209523 Gm31784 lincRNA Interval_74266 chr17 47795403 47795916 + 0 NA Intergenic Intergenic 7749 ENSMUSG00000023990.18 ENSMUSG00000023990 ENSMUST00000140715 Tfeb protein_coding Interval_67398 chr16 48319833 48321513 + 0 NA TTS (ENSMUSG00000072419.5) protein_coding-TTS (ENSMUSG00000072419.5) 16765 ENSMUSG00000072419.5 ENSMUSG00000072419 ENSMUST00000097175 Dppa2 protein_coding Interval_93529 chr2 73825165 73827428 + 0 NA TTS (ENSMUSG00000027104.18) protein_coding-TTS (ENSMUSG00000027104.18) 1535 ENSMUSG00000099302.1 ENSMUSG00000099302 ENSMUST00000184729 Gm27421 misc_RNA Interval_146388 chr7 45638686 45639200 + 0 NA promoter-TSS (ENSMUSG00000110357.1) antisense-promoter-TSS (ENSMUSG00000110357.1) -178 ENSMUSG00000110357.1 ENSMUSG00000110357 ENSMUST00000211533 A030001D20Rik antisense Interval_128608 chr5 114279452 114279836 + 0 NA Intergenic Intergenic -5895 ENSMUSG00000042002.11 ENSMUSG00000042002 ENSMUST00000147953 Foxn4 protein_coding Interval_56979 chr14 124648745 124648978 + 0 NA intron (ENSMUSG00000025551.13, intron 1 of 4) protein_coding-intron (ENSMUSG00000025551.13, intron 1 of 4) 28266 ENSMUSG00000025551.13 ENSMUSG00000025551 ENSMUST00000026631 Fgf14 protein_coding Interval_12063 chr1 189315913 189316139 + 0 NA intron (ENSMUSG00000037624.15, intron 2 of 6) protein_coding-intron (ENSMUSG00000037624.15, intron 2 of 6) -27958 ENSMUSG00000104507.1 ENSMUSG00000104507 ENSMUST00000192797 A430027H14Rik antisense Interval_46747 chr13 69882424 69883000 + 0 NA Intergenic Intergenic -77121 ENSMUSG00000113802.1 ENSMUSG00000113802 ENSMUST00000220972 4933416O17Rik lincRNA Interval_127066 chr5 100046969 100048312 + 0 NA intron (ENSMUSG00000029326.13, intron 1 of 2) protein_coding-intron (ENSMUSG00000029326.13, intron 1 of 6) -8771 ENSMUSG00000029328.15 ENSMUSG00000029328 ENSMUST00000151323 Hnrnpdl protein_coding Interval_170402 chr9 107691506 107693450 + 0 NA intron (ENSMUSG00000034684.12, intron 1 of 3) protein_coding-intron (ENSMUSG00000034684.12, intron 3 of 17) -7717 ENSMUSG00000034684.12 ENSMUSG00000034684 ENSMUST00000195023 Sema3f protein_coding Interval_22939 chr11 17667430 17668518 + 0 NA Intergenic Intergenic -28791 ENSMUSG00000082411.1 ENSMUSG00000082411 ENSMUST00000119079 Gm12016 processed_pseudogene Interval_163088 chr9 15169506 15171403 + 0 NA Intergenic Intergenic 41331 ENSMUSG00000077384.1 ENSMUSG00000077384 ENSMUST00000104196 Gm22658 snRNA Interval_86978 chr19 45301009 45303025 + 0 NA intron (ENSMUSG00000100417.2, intron 3 of 4) lincRNA-intron (ENSMUSG00000100417.2, intron 3 of 3) 2166 ENSMUSG00000100417.2 ENSMUSG00000100417 ENSMUST00000235311 Gm28578 lincRNA Interval_166215 chr9 57550187 57550589 + 0 NA promoter-TSS (ENSMUSG00000032306.14) protein_coding-promoter-TSS (ENSMUSG00000032306.14) 2321 ENSMUSG00000032306.14 ENSMUSG00000032306 ENSMUST00000124593 Mpi protein_coding Interval_102550 chr3 27690183 27690408 + 0 NA intron (ENSMUSG00000039286.12, intron 1 of 26) protein_coding-intron (ENSMUSG00000039286.12, intron 1 of 25) 20103 ENSMUSG00000039286.12 ENSMUSG00000039286 ENSMUST00000193779 Fndc3b protein_coding Interval_108861 chr3 132807573 132809321 + 0 NA exon (ENSMUSG00000105691.1, exon 1 of 1) TEC-exon (ENSMUSG00000105691.1, exon 1 of 1) 2194 ENSMUSG00000105691.1 ENSMUSG00000105691 ENSMUST00000196989 Gm42876 TEC Interval_129170 chr5 117963334 117964560 + 0 NA Intergenic Intergenic 12613 ENSMUSG00000088085.1 ENSMUSG00000088085 ENSMUST00000157460 Gm25343 snRNA Interval_27441 chr11 67778111 67778457 + 0 NA intron (ENSMUSG00000097886.2, intron 1 of 4) protein_coding-intron (ENSMUSG00000097886.2, intron 1 of 4) 3676 ENSMUSG00000097886.2 ENSMUSG00000097886 ENSMUST00000155317 Gsg1l2 protein_coding Interval_27016 chr11 62387166 62387710 + 0 NA intron (ENSMUSG00000018501.17, intron 14 of 19) protein_coding-intron (ENSMUSG00000018501.17, intron 14 of 45) -4084 ENSMUSG00000018501.17 ENSMUSG00000018501 ENSMUST00000141447 Ncor1 protein_coding Interval_93063 chr2 69892864 69893747 + 0 NA Intergenic Intergenic 7577 ENSMUSG00000085735.1 ENSMUSG00000085735 ENSMUST00000129114 Mettl5os antisense Interval_79227 chr18 26135128 26135332 + 0 NA intron (ENSMUSG00000117604.1, intron 4 of 13) processed_transcript-intron (ENSMUSG00000117604.1, intron 4 of 13) 127673 ENSMUSG00000117604.1 ENSMUSG00000117604 ENSMUST00000234272 Gm33228 processed_transcript Interval_151217 chr7 119785714 119785951 + 0 NA TTS (ENSMUSG00000030935.15) protein_coding-TTS (ENSMUSG00000030935.15) 5096 ENSMUSG00000030935.15 ENSMUSG00000030935 ENSMUST00000154828 Acsm3 protein_coding Interval_60257 chr15 70840323 70840888 + 0 NA Intergenic Intergenic 82552 ENSMUSG00000116449.1 ENSMUSG00000116449 ENSMUST00000229501 Gm18155 processed_pseudogene Interval_52062 chr14 34971546 34971791 + 0 NA intron (ENSMUSG00000041078.7, intron 3 of 15) protein_coding-intron (ENSMUSG00000041078.7, intron 3 of 15) 77059 ENSMUSG00000065481.1 ENSMUSG00000065481 ENSMUST00000083547 Mir346 miRNA Interval_154750 chr8 23106677 23106917 + 0 NA intron (ENSMUSG00000031543.18, intron 18 of 45) protein_coding-intron (ENSMUSG00000031543.18, intron 18 of 44) -4701 ENSMUSG00000106605.1 ENSMUSG00000106605 ENSMUST00000197671 Gm44365 miRNA Interval_67659 chr16 55777073 55777428 + 0 NA Intergenic Intergenic 1894 ENSMUSG00000088450.1 ENSMUSG00000088450 ENSMUST00000157825 Gm26369 snRNA Interval_116787 chr4 117297921 117298205 + 0 NA TTS (ENSMUSG00000085749.1) antisense-TTS (ENSMUSG00000085749.1) 1919 ENSMUSG00000085749.1 ENSMUSG00000085749 ENSMUST00000139618 Gm12843 antisense Interval_142515 chr6 143008621 143009467 + 0 NA Intergenic Intergenic 19434 ENSMUSG00000107839.1 ENSMUSG00000107839 ENSMUST00000203259 4930434O05Rik lincRNA Interval_168424 chr9 80189665 80190050 + 0 NA intron (ENSMUSG00000033577.18, intron 1 of 35) protein_coding-intron (ENSMUSG00000033577.18, intron 1 of 32) 24630 ENSMUSG00000033577.18 ENSMUSG00000033577 ENSMUST00000138650 Myo6 protein_coding Interval_51816 chr14 32446716 32446930 + 0 NA TTS (ENSMUSG00000021919.8) protein_coding-TTS (ENSMUSG00000021919.8) 18027 ENSMUSG00000100241.1 ENSMUSG00000100241 ENSMUST00000191501 Slc18a3 protein_coding Interval_131101 chr5 135118604 135119603 + 0 NA intron (ENSMUSG00000005373.13, intron 2 of 3) protein_coding-intron (ENSMUSG00000005373.13, intron 2 of 16) 4190 ENSMUSG00000107296.1 ENSMUSG00000107296 ENSMUST00000201067 Gm43500 antisense Interval_123415 chr5 32383859 32384085 + 0 NA Intergenic Intergenic 9334 ENSMUSG00000107036.1 ENSMUSG00000107036 ENSMUST00000202171 Gm7596 lincRNA Interval_114958 chr4 87680572 87681726 + 0 NA Intergenic Intergenic 100360 ENSMUSG00000082443.1 ENSMUSG00000082443 ENSMUST00000118382 Gm12604 processed_pseudogene Interval_104593 chr3 68606536 68607123 + 0 NA intron (ENSMUSG00000027777.15, intron 3 of 5) protein_coding-intron (ENSMUSG00000027777.15, intron 3 of 7) -59121 ENSMUSG00000084617.1 ENSMUSG00000084617 ENSMUST00000122668 Gm22073 snRNA Interval_95144 chr2 104255263 104256811 + 0 NA promoter-TSS (ENSMUSG00000087473.7) antisense-promoter-TSS (ENSMUSG00000087473.7) -635 ENSMUSG00000087473.7 ENSMUSG00000087473 ENSMUST00000150450 Gm13883 antisense Interval_52140 chr14 37056986 37058804 + 0 NA intron (ENSMUSG00000041044.9, intron 2 of 3) protein_coding-intron (ENSMUSG00000041044.9, intron 2 of 3) 3065 ENSMUSG00000041044.9 ENSMUSG00000041044 ENSMUST00000120052 Lrit1 protein_coding Interval_78721 chr18 19063136 19064446 + 0 NA Intergenic Intergenic -69426 ENSMUSG00000117378.1 ENSMUSG00000117378 ENSMUST00000234128 Gm31086 lincRNA Interval_106809 chr3 101012115 101013000 + 0 NA intron (ENSMUSG00000086564.9, intron 5 of 8) protein_coding-intron (ENSMUSG00000086564.9, intron 5 of 8) 9619 ENSMUSG00000086564.9 ENSMUSG00000086564 ENSMUST00000167086 Cd101 protein_coding Interval_56661 chr14 121243616 121244801 + 0 NA intron (ENSMUSG00000025555.14, intron 13 of 26) protein_coding-intron (ENSMUSG00000025555.14, intron 13 of 26) -4498 ENSMUSG00000085133.2 ENSMUSG00000085133 ENSMUST00000130256 B930095G15Rik sense_intronic Interval_93729 chr2 76258028 76258287 + 0 NA intron (ENSMUSG00000075270.11, intron 2 of 19) protein_coding-intron (ENSMUSG00000075270.11, intron 2 of 19) -42763 ENSMUSG00000075270.11 ENSMUSG00000075270 ENSMUST00000144892 Pde11a protein_coding Interval_56290 chr14 116618645 116619474 + 0 NA Intergenic Intergenic -131156 ENSMUSG00000104296.1 ENSMUSG00000104296 ENSMUST00000193536 Gm38045 TEC Interval_101633 chr3 8285130 8285978 + 0 NA Intergenic Intergenic -41977 ENSMUSG00000103921.1 ENSMUSG00000103921 ENSMUST00000195307 Gm5841 processed_pseudogene Interval_83714 chr19 3903172 3904950 + 0 NA promoter-TSS (ENSMUSG00000001750.16) protein_coding-promoter-TSS (ENSMUSG00000001750.16) 2179 ENSMUSG00000001750.16 ENSMUSG00000001750 ENSMUST00000236590 Tcirg1 protein_coding Interval_48692 chr13 101438946 101440300 + 0 NA intron (ENSMUSG00000100733.2, intron 7 of 8) lincRNA-intron (ENSMUSG00000100733.2, intron 3 of 6) 3628 ENSMUSG00000103437.1 ENSMUSG00000103437 ENSMUST00000192941 Gm36994 TEC Interval_114776 chr4 85188156 85189633 + 0 NA Intergenic Intergenic 12367 ENSMUSG00000084267.1 ENSMUSG00000084267 ENSMUST00000119153 Gm12417 processed_pseudogene Interval_70118 chr17 5455357 5455856 + 0 NA Intergenic Intergenic -15347 ENSMUSG00000004945.15 ENSMUSG00000004945 ENSMUST00000185896 Tmem242 protein_coding Interval_4690 chr1 77312898 77313396 + 0 NA Intergenic Intergenic -166155 ENSMUSG00000102904.1 ENSMUSG00000102904 ENSMUST00000193479 Gm38265 TEC Interval_76312 chr17 78968588 78969040 + 0 NA TTS (ENSMUSG00000024070.15) protein_coding-TTS (ENSMUSG00000024070.15) 23787 ENSMUSG00000024082.5 ENSMUSG00000024082 ENSMUST00000232821 Ndufaf7 protein_coding Interval_59323 chr15 51677852 51678070 + 0 NA Intergenic Intergenic -48326 ENSMUSG00000115563.1 ENSMUSG00000115563 ENSMUST00000227000 Gm34562 lincRNA Interval_72743 chr17 31877538 31878957 + 0 NA Intergenic Intergenic 20931 ENSMUSG00000117562.2 ENSMUSG00000117562 ENSMUST00000234078 Gm50000 lincRNA Interval_59752 chr15 59040590 59041262 + 0 NA promoter-TSS (ENSMUSG00000022353.10) protein_coding-promoter-TSS (ENSMUSG00000022353.10) 41079 ENSMUSG00000022353.10 ENSMUSG00000022353 ENSMUST00000227797 Mtss1 protein_coding Interval_2665 chr1 43112872 43113073 + 0 NA intron (ENSMUSG00000010290.7, intron 3 of 3) protein_coding-intron (ENSMUSG00000010290.7, intron 3 of 3) 14262 ENSMUSG00000010290.7 ENSMUSG00000010290 ENSMUST00000010434 AI597479 protein_coding Interval_39265 chr12 86319816 86321343 + 0 NA Intergenic Intergenic -14573 ENSMUSG00000097488.1 ENSMUSG00000097488 ENSMUST00000181495 4732487G21Rik lincRNA Interval_122781 chr5 25414829 25415636 + 0 NA intron (ENSMUSG00000038056.15, intron 2 of 13) protein_coding-intron (ENSMUSG00000038056.15, intron 2 of 58) 18053 ENSMUSG00000092181.1 ENSMUSG00000092181 ENSMUST00000173716 Gm20432 processed_pseudogene Interval_23363 chr11 21906719 21907667 + 0 NA Intergenic Intergenic -29243 ENSMUSG00000084004.1 ENSMUSG00000084004 ENSMUST00000117561 Gm12047 processed_pseudogene Interval_103704 chr3 51741604 51742394 + 0 NA intron (ENSMUSG00000061143.15, intron 2 of 4) protein_coding-intron (ENSMUSG00000061143.15, intron 1 of 3) 20089 ENSMUSG00000102732.1 ENSMUSG00000102732 ENSMUST00000194588 Gm37342 TEC Interval_13281 chr10 14062071 14062451 + 0 NA intron (ENSMUSG00000015501.10, intron 2 of 3) protein_coding-intron (ENSMUSG00000015501.10, intron 1 of 8) 92185 ENSMUSG00000101014.1 ENSMUSG00000101014 ENSMUST00000189331 Gm28289 antisense Interval_141122 chr6 125120220 125120407 + 0 NA exon (ENSMUSG00000063870.12, exon 26 of 39) protein_coding-exon (ENSMUSG00000063870.12, exon 26 of 39) -1411 ENSMUSG00000088208.1 ENSMUSG00000088208 ENSMUST00000157583 Gm23751 scaRNA Interval_117818 chr4 126399463 126399897 + 0 NA intron (ENSMUSG00000028842.15, intron 2 of 2) protein_coding-intron (ENSMUSG00000028842.15, intron 5 of 18) 4655 ENSMUSG00000028842.15 ENSMUSG00000028842 ENSMUST00000123233 Ago3 protein_coding Interval_118849 chr4 134043285 134043750 + 0 NA Intergenic Intergenic -10321 ENSMUSG00000049410.8 ENSMUSG00000049410 ENSMUST00000105884 Zfp683 protein_coding Interval_89699 chr2 24768688 24769446 + 0 NA Intergenic Intergenic 94366 ENSMUSG00000083973.1 ENSMUSG00000083973 ENSMUST00000121558 Gm13459 processed_pseudogene Interval_25707 chr11 50925877 50926242 + 0 NA intron (ENSMUSG00000020335.13, intron 3 of 3) protein_coding-intron (ENSMUSG00000020335.13, intron 4 of 4) 4874 ENSMUSG00000020335.13 ENSMUSG00000020335 ENSMUST00000152296 Zfp354b protein_coding Interval_16199 chr10 61398134 61399867 + 0 NA Intergenic Intergenic -17952 ENSMUSG00000112875.1 ENSMUSG00000112875 ENSMUST00000219196 Gm48074 TEC Interval_90651 chr2 31687892 31688985 + 0 NA promoter-TSS (ENSMUSG00000026842.16) protein_coding-promoter-TSS (ENSMUSG00000026842.16) 31 ENSMUSG00000087549.1 ENSMUSG00000087549 ENSMUST00000154296 Gm13427 antisense Interval_67915 chr16 59497811 59498631 + 0 NA intron (ENSMUSG00000022723.16, intron 4 of 6) protein_coding-intron (ENSMUSG00000022723.16, intron 16 of 18) 26153 ENSMUSG00000022724.15 ENSMUSG00000022724 ENSMUST00000131272 Riox2 protein_coding Interval_6149 chr1 98084818 98085034 + 0 NA intron (ENSMUSG00000026335.16, intron 1 of 2) protein_coding-intron (ENSMUSG00000026335.16, intron 1 of 25) -27043 ENSMUSG00000026335.16 ENSMUSG00000026335 ENSMUST00000163007 Pam protein_coding Interval_161566 chr8 121248910 121249916 + 0 NA intron (ENSMUSG00000092329.1, intron 1 of 15) protein_coding-intron (ENSMUSG00000092329.1, intron 1 of 15) -45811 ENSMUSG00000097097.2 ENSMUSG00000097097 ENSMUST00000212635 5033426O07Rik lincRNA Interval_153054 chr7 141082810 141083145 + 0 NA TTS (ENSMUSG00000054065.12) protein_coding-TTS (ENSMUSG00000054065.12) 3202 ENSMUSG00000054065.12 ENSMUSG00000054065 ENSMUST00000161142 Pkp3 protein_coding Interval_66399 chr16 33615910 33616613 + 0 NA promoter-TSS (ENSMUSG00000035506.16) protein_coding-promoter-TSS (ENSMUSG00000035506.16) -129 ENSMUSG00000035506.16 ENSMUSG00000035506 ENSMUST00000149291 Slc12a8 protein_coding Interval_13664 chr10 20769959 20770444 + 0 NA intron (ENSMUSG00000111091.1, intron 3 of 4) lincRNA-intron (ENSMUSG00000111091.1, intron 3 of 4) 14084 ENSMUSG00000111091.1 ENSMUSG00000111091 ENSMUST00000213510 Gm48651 lincRNA Interval_91944 chr2 51894406 51894843 + 0 NA Intergenic Intergenic -23006 ENSMUSG00000087701.4 ENSMUSG00000087701 ENSMUST00000120318 Gm13493 processed_pseudogene Interval_49539 chr13 112806585 112807073 + 0 NA intron (ENSMUSG00000021759.14, intron 1 of 5) protein_coding-intron (ENSMUSG00000021759.14, intron 1 of 5) 5966 ENSMUSG00000021759.14 ENSMUSG00000021759 ENSMUST00000070951 Plpp1 protein_coding Interval_18712 chr10 89560366 89560741 + 0 NA Intergenic Intergenic -4834 ENSMUSG00000112272.1 ENSMUSG00000112272 ENSMUST00000220140 Gm48087 processed_pseudogene Interval_78678 chr18 16821936 16822183 + 0 NA TTS (ENSMUSG00000086095.2) lincRNA-TTS (ENSMUSG00000086095.2) 5727 ENSMUSG00000086095.2 ENSMUSG00000086095 ENSMUST00000144006 Gm15328 lincRNA Interval_134461 chr6 28914452 28914829 + 0 NA intron (ENSMUSG00000001424.14, intron 16 of 16) protein_coding-intron (ENSMUSG00000001424.14, intron 16 of 16) -66994 ENSMUSG00000092090.2 ENSMUSG00000092090 ENSMUST00000164104 Gm3294 lincRNA Interval_26201 chr11 55051864 55052137 + 0 NA intron (ENSMUSG00000049588.13, intron 5 of 5) protein_coding-intron (ENSMUSG00000049588.13, intron 5 of 6) -18585 ENSMUSG00000018340.13 ENSMUSG00000018340 ENSMUST00000148298 Anxa6 protein_coding Interval_114686 chr4 83775501 83776013 + 0 NA intron (ENSMUSG00000052407.17, intron 23 of 25) protein_coding-intron (ENSMUSG00000052407.17, intron 23 of 25) 32080 ENSMUSG00000097942.1 ENSMUSG00000097942 ENSMUST00000182894 Gm26968 sense_intronic Interval_132599 chr5 146650280 146650496 + 0 NA Intergenic Intergenic -50286 ENSMUSG00000105907.1 ENSMUSG00000105907 ENSMUST00000200363 Gm34333 lincRNA Interval_170364 chr9 107451788 107452973 + 0 NA intron (ENSMUSG00000010066.15, intron 2 of 37) protein_coding-intron (ENSMUSG00000010066.15, intron 2 of 37) -7349 ENSMUSG00000091425.1 ENSMUSG00000091425 ENSMUST00000164032 Gm17118 antisense Interval_110571 chr4 4010090 4010362 + 0 NA intron (ENSMUSG00000028236.3, intron 4 of 6) protein_coding-intron (ENSMUSG00000028236.3, intron 4 of 6) 6395 ENSMUSG00000028236.3 ENSMUSG00000028236 ENSMUST00000126274 Sdr16c5 protein_coding Interval_24556 chr11 34416358 34416666 + 0 NA intron (ENSMUSG00000069911.11, intron 3 of 3) protein_coding-intron (ENSMUSG00000069911.11, intron 4 of 4) 101754 ENSMUSG00000069911.11 ENSMUSG00000069911 ENSMUST00000093192 Insyn2b protein_coding Interval_25467 chr11 48782234 48783654 + 0 NA Intergenic Intergenic -17388 ENSMUSG00000020372.15 ENSMUSG00000020372 ENSMUST00000136849 Rack1 protein_coding Interval_39316 chr12 86663487 86663849 + 0 NA Intergenic Intergenic 8543 ENSMUSG00000075832.1 ENSMUSG00000075832 ENSMUST00000101884 Gm22004 snRNA Interval_95480 chr2 109966188 109966429 + 0 NA intron (ENSMUSG00000050199.13, intron 1 of 16) protein_coding-intron (ENSMUSG00000050199.13, intron 1 of 17) -9234 ENSMUSG00000050199.13 ENSMUSG00000050199 ENSMUST00000142869 Lgr4 protein_coding Interval_69677 chr16 95341211 95342237 + 0 NA intron (ENSMUSG00000116720.1, intron 1 of 1) antisense-intron (ENSMUSG00000116720.1, intron 1 of 1) 13952 ENSMUSG00000116720.1 ENSMUSG00000116720 ENSMUST00000232605 Gm31641 antisense Interval_146902 chr7 55710773 55711352 + 0 NA Intergenic Intergenic 8908 ENSMUSG00000088640.1 ENSMUSG00000088640 ENSMUST00000158015 Gm26482 snRNA Interval_63023 chr15 98691503 98692461 + 0 NA intron (ENSMUSG00000116482.1, intron 4 of 4) lincRNA-intron (ENSMUSG00000116482.1, intron 4 of 4) 4209 ENSMUSG00000116482.1 ENSMUSG00000116482 ENSMUST00000230172 Gm34152 lincRNA Interval_85648 chr19 29326999 29327240 + 0 NA Intergenic Intergenic -1763 ENSMUSG00000050957.4 ENSMUSG00000050957 ENSMUST00000052380 Insl6 protein_coding Interval_166302 chr9 58196342 58199692 + 0 NA exon (ENSMUSG00000051243.14, exon 3 of 3) protein_coding-exon (ENSMUSG00000051243.14, exon 3 of 3) -4880 ENSMUSG00000057818.8 ENSMUSG00000057818 ENSMUST00000178259 1600029O15Rik transcribed_processed_pseudogene Interval_21066 chr10 125838619 125840259 + 0 NA Intergenic Intergenic -126795 ENSMUSG00000020105.9 ENSMUSG00000020105 ENSMUST00000219974 Lrig3 protein_coding Interval_36385 chr12 42973012 42973295 + 0 NA intron (ENSMUSG00000112407.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000112407.1, intron 3 of 3) 42306 ENSMUSG00000112407.1 ENSMUSG00000112407 ENSMUST00000219475 Gm33340 lincRNA Interval_34382 chr12 3754148 3755696 + 0 NA intron (ENSMUSG00000071454.13, intron 16 of 20) protein_coding-intron (ENSMUSG00000071454.13, intron 15 of 18) 7224 ENSMUSG00000092286.1 ENSMUSG00000092286 ENSMUST00000173847 Dtnbos antisense Interval_12537 chr1 194976055 194977264 + 0 NA exon (ENSMUSG00000097325.2, exon 1 of 5) antisense-exon (ENSMUSG00000097325.2, exon 1 of 5) 301 ENSMUSG00000097325.2 ENSMUSG00000097325 ENSMUST00000180780 Gm16897 antisense Interval_73318 chr17 36174622 36175137 + 0 NA Intergenic Intergenic -4235 ENSMUSG00000092374.1 ENSMUSG00000092374 ENSMUST00000173570 Gm6623 processed_pseudogene Interval_81855 chr18 65335387 65336070 + 0 NA intron (ENSMUSG00000032845.16, intron 1 of 9) protein_coding-intron (ENSMUSG00000032845.16, intron 4 of 12) -7093 ENSMUSG00000117971.1 ENSMUSG00000117971 ENSMUST00000237943 Gm50220 processed_pseudogene Interval_90256 chr2 29353817 29354018 + 0 NA intron (ENSMUSG00000086994.1, intron 1 of 1) protein_coding-intron (ENSMUSG00000026799.15, intron 2 of 7) 42542 ENSMUSG00000086994.1 ENSMUSG00000086994 ENSMUST00000153600 Gm13402 antisense Interval_85221 chr19 23948081 23948937 + 0 NA exon (ENSMUSG00000024897.9, exon 13 of 13) protein_coding-exon (ENSMUSG00000024897.9, exon 13 of 13) -6915 ENSMUSG00000118340.1 ENSMUSG00000118340 ENSMUST00000236338 Gm50301 antisense Interval_83691 chr19 3757428 3758778 + 0 NA Intergenic Intergenic -10043 ENSMUSG00000045098.19 ENSMUSG00000045098 ENSMUST00000176125 Kmt5b protein_coding Interval_74801 chr17 56626442 56627975 + 0 NA promoter-TSS (ENSMUSG00000041168.10) protein_coding-promoter-TSS (ENSMUSG00000041168.10) -333 ENSMUSG00000041168.10 ENSMUSG00000041168 ENSMUST00000047226 Lonp1 protein_coding Interval_19574 chr10 103443043 103443868 + 0 NA Intergenic Intergenic 13545 ENSMUSG00000112923.1 ENSMUSG00000112923 ENSMUST00000220020 Gm8768 processed_pseudogene Interval_113980 chr4 62248170 62248461 + 0 NA Intergenic Intergenic -14247 ENSMUSG00000066152.11 ENSMUSG00000066152 ENSMUST00000107467 Slc31a2 protein_coding Interval_111158 chr4 13350650 13351133 + 0 NA Intergenic Intergenic -83841 ENSMUSG00000080359.2 ENSMUSG00000080359 ENSMUST00000116709 Gm26250 miRNA Interval_84229 chr19 8897027 8898706 + 0 NA promoter-TSS (ENSMUSG00000071650.6) protein_coding-promoter-TSS (ENSMUSG00000071650.6) 4861 ENSMUSG00000071652.8 ENSMUSG00000071652 ENSMUST00000096249 Ints5 protein_coding Interval_34512 chr12 4833151 4833451 + 0 NA TTS (ENSMUSG00000020635.8) protein_coding-TTS (ENSMUSG00000020635.8) 8134 ENSMUSG00000020635.8 ENSMUSG00000020635 ENSMUST00000219880 Fkbp1b protein_coding Interval_102761 chr3 30855543 30856571 + 0 NA promoter-TSS (ENSMUSG00000037661.14) protein_coding-promoter-TSS (ENSMUSG00000037661.14) 64 ENSMUSG00000037661.14 ENSMUSG00000037661 ENSMUST00000147697 Gpr160 protein_coding Interval_137490 chr6 72733424 72733725 + 0 NA intron (ENSMUSG00000055799.13, intron 2 of 5) protein_coding-intron (ENSMUSG00000055799.13, intron 3 of 11) 18340 ENSMUSG00000104501.1 ENSMUSG00000104501 ENSMUST00000193564 Gm37736 TEC Interval_124356 chr5 44460394 44460658 + 0 NA Intergenic Intergenic -32934 ENSMUSG00000104800.1 ENSMUSG00000104800 ENSMUST00000199005 Gm36017 lincRNA Interval_42246 chr13 10862633 10863392 + 0 NA Intergenic Intergenic -111411 ENSMUSG00000113673.1 ENSMUSG00000113673 ENSMUST00000221075 Gm47486 lincRNA Interval_129717 chr5 121938179 121938800 + 0 NA intron (ENSMUSG00000042589.18, intron 1 of 6) protein_coding-intron (ENSMUSG00000042589.18, intron 2 of 22) -72426 ENSMUSG00000042589.18 ENSMUSG00000042589 ENSMUST00000125267 Cux2 protein_coding Interval_89504 chr2 21246350 21247161 + 0 NA Intergenic Intergenic 2650 ENSMUSG00000084071.1 ENSMUSG00000084071 ENSMUST00000117483 Gm13378 processed_pseudogene Interval_77520 chr17 90696222 90697221 + 0 NA intron (ENSMUSG00000024109.18, intron 1 of 2) protein_coding-intron (ENSMUSG00000024109.18, intron 6 of 20) 97285 ENSMUSG00000092549.1 ENSMUSG00000092549 ENSMUST00000173765 Gm20491 processed_pseudogene Interval_6442 chr1 108826991 108827459 + 0 NA Intergenic Intergenic 57090 ENSMUSG00000101097.1 ENSMUSG00000101097 ENSMUST00000191467 Gm6679 processed_pseudogene Interval_123403 chr5 32272695 32272921 + 0 NA intron (ENSMUSG00000029134.14, intron 6 of 38) protein_coding-intron (ENSMUSG00000029134.14, intron 6 of 57) 39311 ENSMUSG00000081200.1 ENSMUSG00000081200 ENSMUST00000118876 Gm15615 processed_pseudogene Interval_121261 chr4 154496764 154498359 + 0 NA intron (ENSMUSG00000039410.16, intron 2 of 2) protein_coding-intron (ENSMUSG00000039410.16, intron 2 of 16) -52721 ENSMUSG00000086565.1 ENSMUSG00000086565 ENSMUST00000143888 Gm13133 antisense Interval_73071 chr17 34612044 34612669 + 0 NA TTS (ENSMUSG00000015467.14) protein_coding-TTS (ENSMUSG00000015467.14) 2751 ENSMUSG00000034254.17 ENSMUSG00000034254 ENSMUST00000173146 Agpat1 protein_coding Interval_151429 chr7 122352513 122352909 + 0 NA intron (ENSMUSG00000052889.11, intron 2 of 17) protein_coding-intron (ENSMUSG00000052889.11, intron 2 of 16) -9289 ENSMUSG00000108522.1 ENSMUSG00000108522 ENSMUST00000206841 Gm44664 TEC Interval_18512 chr10 86829319 86829757 + 0 NA intron (ENSMUSG00000112743.1, intron 12 of 13) protein_coding-intron (ENSMUSG00000054027.8, intron 12 of 13) 4435 ENSMUSG00000054027.8 ENSMUSG00000054027 ENSMUST00000218792 Nt5dc3 protein_coding Interval_81882 chr18 65597363 65598338 + 0 NA intron (ENSMUSG00000042439.13, intron 1 of 1) protein_coding-intron (ENSMUSG00000042439.13, intron 2 of 5) -5984 ENSMUSG00000103194.1 ENSMUSG00000103194 ENSMUST00000195369 Gm37643 TEC Interval_132791 chr5 147904828 147905113 + 0 NA Intergenic Intergenic -25101 ENSMUSG00000029650.10 ENSMUSG00000029650 ENSMUST00000138244 Slc46a3 protein_coding Interval_79819 chr18 35295999 35297359 + 0 NA intron (ENSMUSG00000024357.10, intron 2 of 2) protein_coding-intron (ENSMUSG00000024357.10, intron 7 of 9) 32650 ENSMUSG00000117876.1 ENSMUSG00000117876 ENSMUST00000236119 Gm50146 antisense Interval_50444 chr14 13349157 13349869 + 0 NA intron (ENSMUSG00000056296.17, intron 3 of 3) protein_coding-intron (ENSMUSG00000056296.17, intron 2 of 5) 4567 ENSMUSG00000081115.2 ENSMUSG00000081115 ENSMUST00000118492 Gm15913 processed_pseudogene Interval_150919 chr7 116340631 116341688 + 0 NA promoter-TSS (ENSMUSG00000030660.9) protein_coding-promoter-TSS (ENSMUSG00000030660.9) -530 ENSMUSG00000030660.9 ENSMUSG00000030660 ENSMUST00000205767 Pik3c2a protein_coding Interval_86220 chr19 37881457 37881937 + 0 NA Intergenic Intergenic 11427 ENSMUSG00000118115.1 ENSMUSG00000118115 ENSMUST00000237198 Gm4757 processed_pseudogene Interval_158250 chr8 80552062 80552926 + 0 NA Intergenic Intergenic -38021 ENSMUSG00000086912.3 ENSMUSG00000086912 ENSMUST00000142188 4930505O20Rik antisense Interval_121890 chr5 9196791 9197155 + 0 NA Intergenic Intergenic 27910 ENSMUSG00000089562.1 ENSMUSG00000089562 ENSMUST00000158937 Gm24666 snRNA Interval_22834 chr11 16491385 16492246 + 0 NA Intergenic Intergenic 16669 ENSMUSG00000078974.10 ENSMUSG00000078974 ENSMUST00000138695 Sec61g protein_coding Interval_158073 chr8 78556509 78557355 + 0 NA intron (ENSMUSG00000031684.11, intron 4 of 10) protein_coding-intron (ENSMUSG00000031684.11, intron 4 of 11) -47362 ENSMUSG00000110244.1 ENSMUSG00000110244 ENSMUST00000211775 Gm2253 processed_pseudogene Interval_15627 chr10 52428873 52429143 + 0 NA promoter-TSS (ENSMUSG00000023068.16) protein_coding-promoter-TSS (ENSMUSG00000023068.16) 77 ENSMUSG00000023068.16 ENSMUSG00000023068 ENSMUST00000218983 Nus1 protein_coding Interval_65321 chr16 21502912 21503178 + 0 NA intron (ENSMUSG00000033653.18, intron 8 of 31) protein_coding-intron (ENSMUSG00000033653.18, intron 22 of 43) -30067 ENSMUSG00000033653.18 ENSMUSG00000033653 ENSMUST00000127903 Vps8 protein_coding Interval_73082 chr17 34670549 34672874 + 0 NA exon (ENSMUSG00000033327.18, exon 2 of 41) protein_coding-exon (ENSMUSG00000033327.18, exon 2 of 41) 11254 ENSMUSG00000033327.18 ENSMUSG00000033327 ENSMUST00000087399 Tnxb protein_coding Interval_71230 chr17 21438658 21439459 + 0 NA intron (ENSMUSG00000116771.1, intron 1 of 3) antisense-intron (ENSMUSG00000116771.1, intron 1 of 3) 11209 ENSMUSG00000116771.1 ENSMUSG00000116771 ENSMUST00000232563 Gm49691 antisense Interval_57589 chr15 12630038 12630539 + 0 NA intron (ENSMUSG00000022197.16, intron 2 of 4) protein_coding-intron (ENSMUSG00000022197.16, intron 2 of 4) 5058 ENSMUSG00000103130.1 ENSMUSG00000103130 ENSMUST00000191701 F830212C03Rik TEC Interval_89822 chr2 25694376 25695218 + 0 NA Intergenic Intergenic -5246 ENSMUSG00000062061.3 ENSMUSG00000062061 ENSMUST00000077667 Obp2a protein_coding Interval_151669 chr7 125871309 125872620 + 0 NA intron (ENSMUSG00000032743.15, intron 11 of 14) protein_coding-intron (ENSMUSG00000032743.15, intron 24 of 27) 164047 ENSMUSG00000032743.15 ENSMUSG00000032743 ENSMUST00000155059 D430042O09Rik protein_coding Interval_150258 chr7 109061990 109062282 + 0 NA intron (ENSMUSG00000048330.14, intron 1 of 1) protein_coding-intron (ENSMUSG00000048330.14, intron 1 of 5) -4312 ENSMUSG00000048330.14 ENSMUSG00000048330 ENSMUST00000129629 Ric3 protein_coding Interval_149572 chr7 99706410 99707406 + 0 NA exon (ENSMUSG00000030737.17, exon 1 of 14) protein_coding-exon (ENSMUSG00000030737.17, exon 1 of 14) 12611 ENSMUSG00000109559.1 ENSMUSG00000109559 ENSMUST00000208250 Gm34280 antisense Interval_25801 chr11 51807257 51807693 + 0 NA Intergenic Intergenic 43781 ENSMUSG00000020386.5 ENSMUSG00000020386 ENSMUST00000136363 Sar1b protein_coding Interval_71470 chr17 23992997 23994144 + 0 NA TTS (ENSMUSG00000045027.7) protein_coding-TTS (ENSMUSG00000045027.7) 4530 ENSMUSG00000045027.7 ENSMUSG00000045027 ENSMUST00000041649 Prss22 protein_coding Interval_128525 chr5 113818327 113819626 + 0 NA exon (ENSMUSG00000048163.13, exon 2 of 2) protein_coding-exon (ENSMUSG00000048163.13, exon 2 of 2) 341 ENSMUSG00000048163.13 ENSMUSG00000048163 ENSMUST00000198891 Selplg protein_coding Interval_106005 chr3 90572144 90572457 + 0 NA intron (ENSMUSG00000094018.2, intron 2 of 3) protein_coding-intron (ENSMUSG00000094018.2, intron 1 of 1) -11598 ENSMUSG00000065079.1 ENSMUSG00000065079 ENSMUST00000083145 Gm23464 snRNA Interval_26054 chr11 53789320 53789944 + 0 NA intron (ENSMUSG00000081769.9, intron 3 of 4) protein_coding-intron (ENSMUSG00000081769.9, intron 3 of 3) -16437 ENSMUSG00000091191.2 ENSMUSG00000091191 ENSMUST00000170390 Gm17334 TEC Interval_91587 chr2 44104464 44105231 + 0 NA intron (ENSMUSG00000049744.15, intron 1 of 2) protein_coding-intron (ENSMUSG00000049744.15, intron 8 of 13) -39523 ENSMUSG00000085089.1 ENSMUSG00000085089 ENSMUST00000139948 Arhgap15os antisense Interval_101829 chr3 9805310 9805567 + 0 NA intron (ENSMUSG00000027508.15, intron 1 of 2) protein_coding-intron (ENSMUSG00000027508.15, intron 1 of 7) 24290 ENSMUSG00000088004.1 ENSMUSG00000088004 ENSMUST00000157379 Gm24786 rRNA Interval_113101 chr4 48226664 48227007 + 0 NA intron (ENSMUSG00000028343.10, intron 4 of 11) protein_coding-intron (ENSMUSG00000028343.10, intron 4 of 11) -13620 ENSMUSG00000087844.1 ENSMUSG00000087844 ENSMUST00000157219 Mir1958 miRNA Interval_100256 chr2 167998898 167999895 + 0 NA intron (ENSMUSG00000074577.9, intron 3 of 21) protein_coding-intron (ENSMUSG00000074577.9, intron 3 of 21) -8049 ENSMUSG00000074577.9 ENSMUSG00000074577 ENSMUST00000142702 Ripor3 protein_coding Interval_69435 chr16 93443698 93444267 + 0 NA intron (ENSMUSG00000099968.7, intron 1 of 1) lincRNA-intron (ENSMUSG00000099968.7, intron 1 of 2) 14823 ENSMUSG00000099968.7 ENSMUSG00000099968 ENSMUST00000231859 1700029J03Rik lincRNA Interval_110207 chr3 154297836 154298099 + 0 NA Intergenic Intergenic 32092 ENSMUSG00000096225.7 ENSMUSG00000096225 ENSMUST00000204403 Lhx8 protein_coding Interval_28459 chr11 76036320 76036592 + 0 NA Intergenic Intergenic -8674 ENSMUSG00000020846.6 ENSMUSG00000020846 ENSMUST00000021207 Rflnb protein_coding Interval_115475 chr4 99239710 99239977 + 0 NA intron (ENSMUSG00000028550.15, intron 10 of 10) protein_coding-intron (ENSMUSG00000028550.15, intron 10 of 10) -32828 ENSMUSG00000104479.1 ENSMUSG00000104479 ENSMUST00000195331 Gm10305 TEC Interval_50554 chr14 15129660 15130320 + 0 NA Intergenic Intergenic -9013 ENSMUSG00000114946.1 ENSMUSG00000114946 ENSMUST00000226077 Gm47756 TEC Interval_6307 chr1 105759972 105760947 + 0 NA Intergenic Intergenic -3985 ENSMUSG00000101330.1 ENSMUSG00000101330 ENSMUST00000188288 Gm10193 processed_pseudogene Interval_104806 chr3 74052943 74053395 + 0 NA Intergenic Intergenic -35892 ENSMUSG00000104096.1 ENSMUSG00000104096 ENSMUST00000193390 Gm20356 lincRNA Interval_81601 chr18 61992042 61992482 + 0 NA intron (ENSMUSG00000045629.8, intron 5 of 9) protein_coding-intron (ENSMUSG00000045629.8, intron 12 of 16) 14303 ENSMUSG00000045629.8 ENSMUSG00000045629 ENSMUST00000236759 Sh3tc2 protein_coding Interval_144993 chr7 29309447 29309799 + 0 NA promoter-TSS (ENSMUSG00000030584.14) protein_coding-promoter-TSS (ENSMUSG00000030584.14) -5440 ENSMUSG00000030584.14 ENSMUSG00000030584 ENSMUST00000207677 Dpf1 protein_coding Interval_141088 chr6 124900265 124900625 + 0 NA Intergenic Intergenic 9606 ENSMUSG00000030124.2 ENSMUSG00000030124 ENSMUST00000139571 Lag3 protein_coding Interval_24716 chr11 36136036 36136241 + 0 NA intron (ENSMUSG00000049336.16, intron 12 of 28) protein_coding-intron (ENSMUSG00000049336.16, intron 12 of 28) 55474 ENSMUSG00000087245.1 ENSMUSG00000087245 ENSMUST00000147717 Gm12126 antisense Interval_43965 chr13 38503177 38504150 + 0 NA intron (ENSMUSG00000038991.17, intron 8 of 9) protein_coding-intron (ENSMUSG00000038991.17, intron 8 of 9) -10433 ENSMUSG00000114399.1 ENSMUSG00000114399 ENSMUST00000225109 Gm47994 processed_pseudogene Interval_74765 chr17 56394660 56395261 + 0 NA intron (ENSMUSG00000024201.12, intron 2 of 11) protein_coding-intron (ENSMUSG00000024201.12, intron 13 of 22) 1443 ENSMUSG00000024201.12 ENSMUSG00000024201 ENSMUST00000141507 Kdm4b protein_coding Interval_49487 chr13 112382932 112383163 + 0 NA intron (ENSMUSG00000049985.15, intron 11 of 11) protein_coding-intron (ENSMUSG00000049985.15, intron 10 of 10) -15202 ENSMUSG00000114536.1 ENSMUSG00000114536 ENSMUST00000224393 Gm48837 antisense Interval_148223 chr7 79968081 79968824 + 0 NA Intergenic Intergenic 19265 ENSMUSG00000077059.1 ENSMUSG00000077059 ENSMUST00000103871 Gm24541 miRNA Interval_88581 chr2 6356562 6359295 + 0 NA intron (ENSMUSG00000039046.15, intron 1 of 13) protein_coding-intron (ENSMUSG00000039046.15, intron 1 of 13) -34848 ENSMUSG00000118578.1 ENSMUSG00000118578 ENSMUST00000238876 AL845275.1 protein_coding Interval_35014 chr12 16664992 16665891 + 0 NA Intergenic Intergenic -6799 ENSMUSG00000114049.1 ENSMUSG00000114049 ENSMUST00000223113 Gm48140 antisense Interval_157470 chr8 70562239 70563212 + 0 NA intron (ENSMUSG00000070002.7, intron 1 of 11) protein_coding-intron (ENSMUSG00000070002.7, intron 1 of 11) 23268 ENSMUSG00000070002.7 ENSMUSG00000070002 ENSMUST00000093454 Ell protein_coding Interval_129219 chr5 118266370 118266924 + 0 NA TTS (ENSMUSG00000032840.7) protein_coding-TTS (ENSMUSG00000032840.7) 198 ENSMUSG00000095477.1 ENSMUSG00000095477 ENSMUST00000104098 Gm25076 snoRNA Interval_35093 chr12 17258793 17259615 + 0 NA Intergenic Intergenic -7391 ENSMUSG00000020571.13 ENSMUSG00000020571 ENSMUST00000163000 Pdia6 protein_coding Interval_98425 chr2 152275286 152276101 + 0 NA intron (ENSMUSG00000074698.10, intron 11 of 12) protein_coding-intron (ENSMUSG00000074698.10, intron 11 of 12) -18487 ENSMUSG00000027465.13 ENSMUSG00000027465 ENSMUST00000141373 Tbc1d20 protein_coding Interval_111971 chr4 32904474 32904824 + 0 NA intron (ENSMUSG00000040183.13, intron 1 of 16) protein_coding-intron (ENSMUSG00000040183.13, intron 1 of 16) 11963 ENSMUSG00000083565.1 ENSMUSG00000083565 ENSMUST00000119904 Gm11941 processed_pseudogene Interval_82867 chr18 77601364 77601911 + 0 NA Intergenic Intergenic -80977 ENSMUSG00000077593.1 ENSMUSG00000077593 ENSMUST00000104405 Gm26014 snoRNA Interval_172642 chrX 38839007 38839905 + 0 NA intron (ENSMUSG00000051361.7, intron 1 of 3) protein_coding-intron (ENSMUSG00000051361.7, intron 1 of 3) 67172 ENSMUSG00000081147.1 ENSMUSG00000081147 ENSMUST00000117850 Gm6024 processed_pseudogene Interval_121766 chr5 7584648 7585268 + 0 NA Intergenic Intergenic -184596 ENSMUSG00000098077.1 ENSMUSG00000098077 ENSMUST00000182928 Gm4960 processed_pseudogene Interval_45895 chr13 58921615 58921966 + 0 NA intron (ENSMUSG00000055254.15, intron 12 of 17) protein_coding-intron (ENSMUSG00000055254.15, intron 12 of 17) 85975 ENSMUSG00000055254.15 ENSMUSG00000055254 ENSMUST00000223636 Ntrk2 protein_coding Interval_106180 chr3 94372980 94374216 + 0 NA intron (ENSMUSG00000028150.14, intron 1 of 10) protein_coding-intron (ENSMUSG00000028150.14, intron 1 of 10) 3647 ENSMUSG00000104669.1 ENSMUSG00000104669 ENSMUST00000197971 Gm38411 antisense Interval_33553 chr11 117180055 117180305 + 0 NA Intergenic Intergenic 25111 ENSMUSG00000020823.16 ENSMUSG00000020823 ENSMUST00000153437 Sec14l1 protein_coding Interval_155894 chr8 40787266 40787798 + 0 NA Intergenic Intergenic 2604 ENSMUSG00000110032.1 ENSMUSG00000110032 ENSMUST00000210152 Gm8436 processed_pseudogene Interval_24885 chr11 40741587 40742139 + 0 NA Intergenic Intergenic 5557 ENSMUSG00000020328.10 ENSMUSG00000020328 ENSMUST00000144601 Nudcd2 protein_coding Interval_128556 chr5 113999212 113999624 + 0 NA Intergenic Intergenic -10473 ENSMUSG00000042096.15 ENSMUSG00000042096 ENSMUST00000162214 Dao protein_coding Interval_48999 chr13 106816994 106817199 + 0 NA intron (ENSMUSG00000042590.17, intron 2 of 2) protein_coding-intron (ENSMUSG00000042590.17, intron 28 of 29) 18706 ENSMUSG00000118423.1 ENSMUSG00000118423 ENSMUST00000238649 Lrrc70 transcribed_unitary_pseudogene Interval_78558 chr18 14696265 14696955 + 0 NA Intergenic Intergenic -29936 ENSMUSG00000036743.4 ENSMUSG00000036743 ENSMUST00000235037 Psma8 protein_coding Interval_163768 chr9 25508779 25509489 + 0 NA intron (ENSMUSG00000036611.5, intron 2 of 7) protein_coding-intron (ENSMUSG00000036611.5, intron 2 of 7) 26267 ENSMUSG00000036611.5 ENSMUSG00000036611 ENSMUST00000156237 Eepd1 protein_coding Interval_138903 chr6 93305142 93306103 + 0 NA Intergenic Intergenic 29966 ENSMUSG00000077180.1 ENSMUSG00000077180 ENSMUST00000103992 Gm25094 snoRNA Interval_112712 chr4 44334805 44335064 + 0 NA intron (ENSMUSG00000035683.13, intron 11 of 17) protein_coding-intron (ENSMUSG00000035683.13, intron 11 of 17) -20876 ENSMUSG00000081127.1 ENSMUSG00000081127 ENSMUST00000118668 Gm12677 processed_pseudogene Interval_133832 chr6 13028198 13028496 + 0 NA Intergenic Intergenic 28250 ENSMUSG00000098052.1 ENSMUSG00000098052 ENSMUST00000182201 Gm5300 processed_pseudogene Interval_46163 chr13 62129351 62130538 + 0 NA promoter-TSS (ENSMUSG00000074867.4) protein_coding-promoter-TSS (ENSMUSG00000074867.4) 44 ENSMUSG00000074867.4 ENSMUSG00000074867 ENSMUST00000221618 Zfp808 protein_coding Interval_103687 chr3 51636846 51637106 + 0 NA promoter-TSS (ENSMUSG00000104166.1) processed_pseudogene-promoter-TSS (ENSMUSG00000104166.1) -48 ENSMUSG00000104166.1 ENSMUSG00000104166 ENSMUST00000194675 Gm38247 processed_pseudogene Interval_97889 chr2 144890725 144890987 + 0 NA Intergenic Intergenic 40822 ENSMUSG00000082858.1 ENSMUSG00000082858 ENSMUST00000119843 Gm11746 processed_pseudogene Interval_27568 chr11 68767493 68767991 + 0 NA intron (ENSMUSG00000020900.15, intron 12 of 12) protein_coding-intron (ENSMUSG00000020900.15, intron 13 of 42) 75588 ENSMUSG00000020900.15 ENSMUSG00000020900 ENSMUST00000139059 Myh10 protein_coding Interval_40245 chr12 102722370 102723441 + 0 NA intron (ENSMUSG00000098530.1, intron 1 of 1) processed_transcript-intron (ENSMUSG00000096751.3, intron 1 of 2) 4417 ENSMUSG00000100006.1 ENSMUSG00000100006 ENSMUST00000180187 Gm21971 lincRNA Interval_91182 chr2 35714811 35715573 + 0 NA intron (ENSMUSG00000026883.17, intron 3 of 10) protein_coding-intron (ENSMUSG00000026883.17, intron 6 of 13) 4865 ENSMUSG00000026883.17 ENSMUSG00000026883 ENSMUST00000156669 Dab2ip protein_coding Interval_48235 chr13 97347399 97347736 + 0 NA Intergenic Intergenic -28667 ENSMUSG00000114425.1 ENSMUSG00000114425 ENSMUST00000223964 Gm33447 lincRNA Interval_30405 chr11 94169104 94170288 + 0 NA Intergenic Intergenic 36194 ENSMUSG00000086003.7 ENSMUSG00000086003 ENSMUST00000125406 B230206L02Rik processed_transcript Interval_17477 chr10 77133927 77134649 + 0 NA intron (ENSMUSG00000001435.15, intron 2 of 41) protein_coding-intron (ENSMUSG00000001435.15, intron 2 of 41) -2812 ENSMUSG00000112612.1 ENSMUSG00000112612 ENSMUST00000218871 Gm7775 processed_pseudogene Interval_31555 chr11 101338381 101338773 + 0 NA exon (ENSMUSG00000019326.14, exon 4 of 4) protein_coding-exon (ENSMUSG00000019326.14, exon 4 of 4) 7972 ENSMUSG00000019326.14 ENSMUSG00000019326 ENSMUST00000017316 Aoc3 protein_coding Interval_76175 chr17 76082930 76084213 + 0 NA Intergenic Intergenic 9025 ENSMUSG00000077299.1 ENSMUSG00000077299 ENSMUST00000104111 Gm24126 snRNA Interval_35542 chr12 24633530 24634442 + 0 NA Intergenic Intergenic 5024 ENSMUSG00000066553.5 ENSMUSG00000066553 ENSMUST00000140065 Gm6969 processed_pseudogene Interval_26297 chr11 55915246 55915830 + 0 NA intron (ENSMUSG00000086020.1, intron 1 of 4) antisense-intron (ENSMUSG00000086020.1, intron 1 of 4) 125472 ENSMUSG00000037393.2 ENSMUSG00000037393 ENSMUST00000037682 Nmur2 protein_coding Interval_129496 chr5 120562862 120564170 + 0 NA intron (ENSMUSG00000032741.9, intron 2 of 14) protein_coding-intron (ENSMUSG00000032741.9, intron 2 of 27) -10477 ENSMUSG00000106825.1 ENSMUSG00000106825 ENSMUST00000201971 2510016D11Rik TEC Interval_100975 chr2 173769333 173769702 + 0 NA intron (ENSMUSG00000054455.5, intron 1 of 4) protein_coding-intron (ENSMUSG00000054455.5, intron 2 of 5) 1317 ENSMUSG00000054455.5 ENSMUSG00000054455 ENSMUST00000154306 Vapb protein_coding Interval_129584 chr5 121143092 121143706 + 0 NA intron (ENSMUSG00000043733.14, intron 1 of 4) protein_coding-intron (ENSMUSG00000043733.14, intron 12 of 15) 236 ENSMUSG00000043733.14 ENSMUSG00000043733 ENSMUST00000148871 Ptpn11 protein_coding Interval_167153 chr9 65671132 65672311 + 0 NA intron (ENSMUSG00000040652.16, intron 1 of 3) protein_coding-intron (ENSMUSG00000040652.16, intron 1 of 4) 2009 ENSMUSG00000040652.16 ENSMUSG00000040652 ENSMUST00000128664 Oaz2 protein_coding Interval_165024 chr9 43993264 43994168 + 0 NA promoter-TSS (ENSMUSG00000111283.1) processed_transcript-promoter-TSS (ENSMUSG00000111283.1) -268 ENSMUSG00000111283.1 ENSMUSG00000111283 ENSMUST00000215430 E230034D01Rik processed_transcript Interval_41744 chr12 118632640 118633998 + 0 NA Intergenic Intergenic 30642 ENSMUSG00000114034.1 ENSMUSG00000114034 ENSMUST00000222831 Gm9267 processed_pseudogene Interval_80068 chr18 37241792 37242342 + 0 NA intron (ENSMUSG00000103125.1, intron 1 of 2) protein_coding-intron (ENSMUSG00000103458.1, intron 1 of 3) -22871 ENSMUSG00000051663.4 ENSMUSG00000051663 ENSMUST00000052366 Pcdhb1 protein_coding Interval_140153 chr6 114899273 114900366 + 0 NA intron (ENSMUSG00000030315.15, intron 2 of 5) protein_coding-intron (ENSMUSG00000030315.15, intron 1 of 4) 21997 ENSMUSG00000030315.15 ENSMUSG00000030315 ENSMUST00000204693 Vgll4 protein_coding Interval_48462 chr13 99196371 99196719 + 0 NA intron (ENSMUSG00000050919.9, intron 1 of 4) protein_coding-intron (ENSMUSG00000050919.9, intron 1 of 4) 11722 ENSMUSG00000050919.9 ENSMUSG00000050919 ENSMUST00000056558 Zfp366 protein_coding Interval_29456 chr11 84105260 84105454 + 0 NA intron (ENSMUSG00000018651.14, intron 6 of 15) protein_coding-intron (ENSMUSG00000018651.14, intron 6 of 15) -22401 ENSMUSG00000018651.14 ENSMUSG00000018651 ENSMUST00000134994 Tada2a protein_coding Interval_168502 chr9 82662548 82663045 + 0 NA Intergenic Intergenic 137805 ENSMUSG00000098420.1 ENSMUSG00000098420 ENSMUST00000185049 Gm27249 processed_pseudogene Interval_24458 chr11 33427803 33428947 + 0 NA intron (ENSMUSG00000040594.19, intron 14 of 20) protein_coding-intron (ENSMUSG00000040594.19, intron 14 of 27) -10074 ENSMUSG00000083471.1 ENSMUSG00000083471 ENSMUST00000119766 Gm12118 processed_pseudogene Interval_68838 chr16 87495036 87496362 + 0 NA promoter-TSS (ENSMUSG00000093606.1) processed_transcript-promoter-TSS (ENSMUSG00000093606.1) -300 ENSMUSG00000093606.1 ENSMUSG00000093606 ENSMUST00000175717 B130034C11Rik processed_transcript Interval_118842 chr4 134000509 134001734 + 0 NA promoter-TSS (ENSMUSG00000012117.13) protein_coding-promoter-TSS (ENSMUSG00000012117.13) -4197 ENSMUSG00000012117.13 ENSMUSG00000012117 ENSMUST00000150729 Dhdds protein_coding Interval_170492 chr9 108301788 108302196 + 0 NA TTS (ENSMUSG00000039461.12) protein_coding-TTS (ENSMUSG00000039461.12) 3956 ENSMUSG00000039461.12 ENSMUSG00000039461 ENSMUST00000195615 Tcta protein_coding Interval_14732 chr10 39444132 39446087 + 0 NA intron (ENSMUSG00000019843.14, intron 1 of 2) protein_coding-intron (ENSMUSG00000019843.14, intron 2 of 13) -20113 ENSMUSG00000085799.1 ENSMUSG00000085799 ENSMUST00000147879 Gm6963 processed_pseudogene Interval_120950 chr4 151893257 151894114 + 0 NA Intergenic Intergenic 22729 ENSMUSG00000104142.1 ENSMUSG00000104142 ENSMUST00000191938 Gm37141 TEC Interval_166331 chr9 58388562 58389556 + 0 NA Intergenic Intergenic 18555 ENSMUSG00000100487.1 ENSMUSG00000100487 ENSMUST00000191141 1700072B07Rik lincRNA Interval_85598 chr19 28989790 28991213 + 0 NA promoter-TSS (ENSMUSG00000024780.7) protein_coding-promoter-TSS (ENSMUSG00000024780.7) 13341 ENSMUSG00000063754.7 ENSMUSG00000063754 ENSMUST00000183196 Gm10136 processed_pseudogene Interval_48503 chr13 99500091 99501294 + 0 NA intron (ENSMUSG00000052727.6, intron 2 of 6) protein_coding-intron (ENSMUSG00000052727.6, intron 2 of 6) 3747 ENSMUSG00000114282.1 ENSMUSG00000114282 ENSMUST00000223710 5330431K02Rik TEC Interval_116891 chr4 118019189 118020128 + 0 NA intron (ENSMUSG00000028538.12, intron 1 of 7) protein_coding-intron (ENSMUSG00000028538.12, intron 4 of 11) 12224 ENSMUSG00000028538.12 ENSMUSG00000028538 ENSMUST00000126336 St3gal3 protein_coding Interval_55890 chr14 101819475 101820454 + 0 NA intron (ENSMUSG00000033060.16, intron 3 of 30) protein_coding-intron (ENSMUSG00000033060.16, intron 3 of 30) -20543 ENSMUSG00000033060.16 ENSMUSG00000033060 ENSMUST00000160038 Lmo7 protein_coding Interval_58236 chr15 31281781 31282945 + 0 NA exon (ENSMUSG00000115418.1, exon 1 of 1) TEC-exon (ENSMUSG00000115418.1, exon 1 of 1) 274 ENSMUSG00000115418.1 ENSMUSG00000115418 ENSMUST00000228063 Gm49296 TEC Interval_105902 chr3 89987280 89987494 + 0 NA Intergenic Intergenic 10975 ENSMUSG00000027944.13 ENSMUSG00000027944 ENSMUST00000199740 Hax1 protein_coding Interval_88758 chr2 10341536 10342242 + 0 NA intron (ENSMUSG00000086748.1, intron 2 of 3) processed_transcript-intron (ENSMUSG00000086748.1, intron 2 of 3) -30559 ENSMUSG00000061186.15 ENSMUSG00000061186 ENSMUST00000041105 Sfmbt2 protein_coding Interval_37735 chr12 71498043 71498490 + 0 NA intron (ENSMUSG00000113630.1, intron 1 of 5) lincRNA-intron (ENSMUSG00000113441.1, intron 5 of 5) 9981 ENSMUSG00000113630.1 ENSMUSG00000113630 ENSMUST00000220948 4930404H11Rik lincRNA Interval_20878 chr10 121692412 121693495 + 0 NA TTS (ENSMUSG00000047642.15) protein_coding-TTS (ENSMUSG00000047642.15) 12082 ENSMUSG00000112526.1 ENSMUSG00000112526 ENSMUST00000220180 Gm35865 lincRNA Interval_169054 chr9 91320938 91321137 + 0 NA Intergenic Intergenic 6811 ENSMUSG00000104286.1 ENSMUSG00000104286 ENSMUST00000193639 Gm37457 TEC Interval_137220 chr6 70186036 70186987 + 0 NA Intergenic Intergenic -6717 ENSMUSG00000076581.1 ENSMUSG00000076581 ENSMUST00000103382 Igkv8-26 IG_V_gene Interval_155047 chr8 25937097 25938083 + 0 NA exon (ENSMUSG00000031576.16, exon 27 of 27) protein_coding-exon (ENSMUSG00000031576.16, exon 27 of 27) 36463 ENSMUSG00000037260.8 ENSMUSG00000037260 ENSMUST00000209420 Hgsnat protein_coding Interval_35141 chr12 17536255 17537223 + 0 NA Intergenic Intergenic -8233 ENSMUSG00000011179.8 ENSMUSG00000011179 ENSMUST00000222250 Odc1 protein_coding Interval_145376 chr7 34312825 34313905 + 0 NA intron (ENSMUSG00000066571.13, intron 1 of 13) protein_coding-intron (ENSMUSG00000066571.13, intron 1 of 13) 157 ENSMUSG00000066571.13 ENSMUSG00000066571 ENSMUST00000205618 4931406P16Rik protein_coding Interval_168791 chr9 87114916 87115614 + 0 NA Intergenic Intergenic -12069 ENSMUSG00000099539.1 ENSMUSG00000099539 ENSMUST00000187559 Gm8282 processed_pseudogene Interval_33886 chr11 119203251 119203765 + 0 NA intron (ENSMUSG00000039976.4, intron 3 of 11) protein_coding-intron (ENSMUSG00000039976.4, intron 3 of 11) -16652 ENSMUSG00000087404.1 ENSMUSG00000087404 ENSMUST00000143291 Gm11752 lincRNA Interval_152878 chr7 139420035 139420550 + 0 NA intron (ENSMUSG00000025477.14, intron 1 of 15) protein_coding-intron (ENSMUSG00000025477.14, intron 1 of 15) -96367 ENSMUSG00000025477.14 ENSMUSG00000025477 ENSMUST00000152475 Inpp5a protein_coding Interval_163396 chr9 21243933 21245541 + 0 NA exon (ENSMUSG00000045087.8, exon 3 of 3) protein_coding-exon (ENSMUSG00000045087.8, exon 3 of 3) -2976 ENSMUSG00000111623.1 ENSMUSG00000111623 ENSMUST00000215491 Gm48303 TEC Interval_107102 chr3 103562245 103562987 + 0 NA Intergenic Intergenic -12762 ENSMUSG00000027849.19 ENSMUSG00000027849 ENSMUST00000118563 Syt6 protein_coding Interval_100311 chr2 168314819 168315656 + 0 NA Intergenic Intergenic -20116 ENSMUSG00000086783.1 ENSMUSG00000086783 ENSMUST00000148309 Gm14262 lincRNA Interval_63605 chr15 102295740 102296952 + 0 NA promoter-TSS (ENSMUSG00000058290.4) protein_coding-promoter-TSS (ENSMUSG00000058290.4) -195 ENSMUSG00000116091.1 ENSMUSG00000116091 ENSMUST00000229580 Gm49479 bidirectional_promoter_lncRNA Interval_31174 chr11 98712117 98712954 + 0 NA exon (ENSMUSG00000017210.14, exon 14 of 26) protein_coding-exon (ENSMUSG00000017210.14, exon 14 of 26) -1446 ENSMUSG00000088169.1 ENSMUSG00000088169 ENSMUST00000157544 Gm22059 snoRNA Interval_33893 chr11 119227981 119229501 + 0 NA promoter-TSS (ENSMUSG00000039976.4) protein_coding-promoter-TSS (ENSMUSG00000039976.4) 143 ENSMUSG00000039963.20 ENSMUSG00000039963 ENSMUST00000125724 Ccdc40 protein_coding Interval_108011 chr3 119782277 119783974 + 0 NA intron (ENSMUSG00000028134.11, intron 1 of 3) protein_coding-intron (ENSMUSG00000028134.11, intron 1 of 13) 679 ENSMUSG00000028134.11 ENSMUSG00000028134 ENSMUST00000198403 Ptbp2 protein_coding Interval_29028 chr11 79975549 79977489 + 0 NA Intergenic Intergenic -14152 ENSMUSG00000035575.11 ENSMUSG00000035575 ENSMUST00000146127 Utp6 protein_coding Interval_134275 chr6 24384118 24384823 + 0 NA Intergenic Intergenic 130597 ENSMUSG00000046192.4 ENSMUSG00000046192 ENSMUST00000052277 Iqub protein_coding Interval_134369 chr6 26960122 26960487 + 0 NA Intergenic Intergenic 129887 ENSMUSG00000106742.1 ENSMUSG00000106742 ENSMUST00000201073 Gm42474 processed_pseudogene Interval_114224 chr4 68845892 68846226 + 0 NA intron (ENSMUSG00000028351.5, intron 2 of 7) protein_coding-intron (ENSMUSG00000028351.5, intron 2 of 7) -4652 ENSMUSG00000028351.5 ENSMUSG00000028351 ENSMUST00000140572 Brinp1 protein_coding Interval_30102 chr11 89193571 89195150 + 0 NA Intergenic Intergenic -57594 ENSMUSG00000089485.1 ENSMUSG00000089485 ENSMUST00000158860 Gm24734 misc_RNA Interval_112966 chr4 46500317 46500647 + 0 NA intron (ENSMUSG00000028334.10, intron 4 of 4) protein_coding-intron (ENSMUSG00000028334.10, intron 4 of 5) 5327 ENSMUSG00000064410.1 ENSMUSG00000064410 ENSMUST00000082476 Gm22247 snoRNA Interval_21464 chr10 128758561 128758757 + 0 NA intron (ENSMUSG00000064030.15, intron 2 of 3) protein_coding-intron (ENSMUSG00000064030.15, intron 1 of 2) 10131 ENSMUSG00000064030.15 ENSMUSG00000064030 ENSMUST00000218218 Pym1 protein_coding Interval_142296 chr6 140507165 140509352 + 0 NA intron (ENSMUSG00000030231.11, intron 1 of 9) protein_coding-intron (ENSMUSG00000030231.11, intron 3 of 30) -22705 ENSMUSG00000084477.1 ENSMUSG00000084477 ENSMUST00000122528 Gm25780 misc_RNA Interval_86263 chr19 38236478 38238600 + 0 NA Intergenic Intergenic -13401 ENSMUSG00000054237.6 ENSMUSG00000054237 ENSMUST00000238154 Fra10ac1 protein_coding Interval_98299 chr2 150876479 150877167 + 0 NA intron (ENSMUSG00000032046.15, intron 1 of 12) protein_coding-intron (ENSMUSG00000032046.15, intron 1 of 12) -6900 ENSMUSG00000087887.1 ENSMUSG00000087887 ENSMUST00000157262 Gm23598 snoRNA Interval_80925 chr18 50228874 50230126 + 0 NA Intergenic Intergenic -5138 ENSMUSG00000118595.1 ENSMUSG00000118595 ENSMUST00000239331 AC118632.1 processed_pseudogene Interval_64147 chr16 8717429 8717918 + 0 NA intron (ENSMUSG00000022710.17, intron 2 of 31) protein_coding-intron (ENSMUSG00000022710.17, intron 1 of 30) -19141 ENSMUSG00000022710.17 ENSMUSG00000022710 ENSMUST00000159509 Usp7 protein_coding Interval_7580 chr1 132312736 132313100 + 0 NA Intergenic Intergenic 14292 ENSMUSG00000042115.4 ENSMUSG00000042115 ENSMUST00000046071 Klhdc8a protein_coding Interval_70309 chr17 8397478 8399006 + 0 NA intron (ENSMUSG00000058159.14, intron 6 of 9) protein_coding-intron (ENSMUSG00000058159.14, intron 5 of 10) -13582 ENSMUSG00000116704.1 ENSMUSG00000116704 ENSMUST00000231828 Gm5491 processed_pseudogene Interval_51732 chr14 31772020 31772801 + 0 NA intron (ENSMUSG00000014496.8, intron 1 of 5) protein_coding-intron (ENSMUSG00000014496.8, intron 2 of 27) -17996 ENSMUSG00000115210.1 ENSMUSG00000115210 ENSMUST00000227034 Gm49308 TEC Interval_69809 chr16 96757396 96760039 + 0 NA intron (ENSMUSG00000117000.1, intron 2 of 4) protein_coding-intron (ENSMUSG00000050272.10, intron 11 of 32) 35205 ENSMUSG00000117000.1 ENSMUSG00000117000 ENSMUST00000233368 Gm32509 processed_transcript Interval_113213 chr4 50223719 50224037 + 0 NA Intergenic Intergenic -62868 ENSMUSG00000095394.1 ENSMUSG00000095394 ENSMUST00000104120 Gm25485 snoRNA Interval_156976 chr8 63538983 63539769 + 0 NA Intergenic Intergenic -6567 ENSMUSG00000109999.1 ENSMUSG00000109999 ENSMUST00000209554 Gm35368 lincRNA Interval_52190 chr14 39754318 39754507 + 0 NA Intergenic Intergenic 85597 ENSMUSG00000114848.1 ENSMUSG00000114848 ENSMUST00000224649 Gm35389 processed_pseudogene Interval_96370 chr2 122027940 122029450 + 0 NA promoter-TSS (ENSMUSG00000027236.8) protein_coding-promoter-TSS (ENSMUSG00000027236.8) 43 ENSMUSG00000027236.8 ENSMUSG00000027236 ENSMUST00000142747 Eif3j1 protein_coding Interval_89628 chr2 23559432 23559757 + 0 NA intron (ENSMUSG00000026771.14, intron 1 of 11) protein_coding-intron (ENSMUSG00000026771.14, intron 1 of 10) -44371 ENSMUSG00000026771.14 ENSMUSG00000026771 ENSMUST00000123843 Spopl protein_coding Interval_28433 chr11 75843001 75844880 + 0 NA intron (ENSMUSG00000020847.15, intron 6 of 8) protein_coding-intron (ENSMUSG00000020847.15, intron 5 of 7) -17029 ENSMUSG00000087322.1 ENSMUSG00000087322 ENSMUST00000135873 Gm16075 antisense Interval_19903 chr10 111103254 111103506 + 0 NA promoter-TSS (ENSMUSG00000112165.1) processed_pseudogene-promoter-TSS (ENSMUSG00000112165.1) -509 ENSMUSG00000112165.1 ENSMUSG00000112165 ENSMUST00000218334 Gm48851 processed_pseudogene Interval_172801 chrX 49745195 49745727 + 0 NA Intergenic Intergenic -10402 ENSMUSG00000067971.5 ENSMUSG00000067971 ENSMUST00000088876 Olfr1321 protein_coding Interval_70927 chr17 16066135 16066653 + 0 NA Intergenic Intergenic -96757 ENSMUSG00000116839.1 ENSMUSG00000116839 ENSMUST00000232488 Gm49778 lincRNA Interval_14031 chr10 25713542 25715272 + 0 NA Intergenic Intergenic -6464 ENSMUSG00000112803.1 ENSMUSG00000112803 ENSMUST00000217933 Gm36543 lincRNA Interval_157907 chr8 75489087 75490001 + 0 NA intron (ENSMUSG00000031620.16, intron 3 of 14) protein_coding-intron (ENSMUSG00000031620.16, intron 1 of 12) 40753 ENSMUSG00000031620.16 ENSMUSG00000031620 ENSMUST00000121983 Iqcm protein_coding Interval_72926 chr17 33550793 33551389 + 0 NA exon (ENSMUSG00000024299.17, exon 23 of 25) protein_coding-exon (ENSMUSG00000024299.17, exon 23 of 25) 26881 ENSMUSG00000024299.17 ENSMUSG00000024299 ENSMUST00000174666 Adamts10 protein_coding Interval_17044 chr10 70832386 70832778 + 0 NA intron (ENSMUSG00000112870.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000112870.1, intron 1 of 2) 1827 ENSMUSG00000112870.1 ENSMUSG00000112870 ENSMUST00000218006 Gm40689 lincRNA Interval_141177 chr6 125430539 125431259 + 0 NA Intergenic Intergenic 32125 ENSMUSG00000030342.8 ENSMUSG00000030342 ENSMUST00000140024 Cd9 protein_coding Interval_169187 chr9 95392121 95392416 + 0 NA Intergenic Intergenic 14454 ENSMUSG00000033350.7 ENSMUSG00000033350 ENSMUST00000036267 Chst2 protein_coding Interval_131138 chr5 135369050 135370508 + 0 NA promoter-TSS (ENSMUSG00000000916.15) protein_coding-promoter-TSS (ENSMUSG00000000916.15) -798 ENSMUSG00000000916.15 ENSMUSG00000000916 ENSMUST00000124453 Nsun5 protein_coding Interval_29698 chr11 86200597 86202107 + 0 NA promoter-TSS (ENSMUSG00000034329.16) protein_coding-promoter-TSS (ENSMUSG00000034329.16) -31 ENSMUSG00000085208.3 ENSMUSG00000085208 ENSMUST00000143819 Brip1os antisense Interval_34590 chr12 6234712 6235721 + 0 NA Intergenic Intergenic 47120 ENSMUSG00000112591.1 ENSMUSG00000112591 ENSMUST00000219548 Gm4927 processed_pseudogene Interval_44007 chr13 39363551 39363775 + 0 NA Intergenic Intergenic -76902 ENSMUSG00000114512.1 ENSMUSG00000114512 ENSMUST00000226065 Gm47348 lincRNA Interval_42345 chr13 12251134 12251591 + 0 NA intron (ENSMUSG00000021311.9, intron 2 of 17) protein_coding-intron (ENSMUSG00000021311.9, intron 2 of 32) 6751 ENSMUSG00000021311.9 ENSMUSG00000021311 ENSMUST00000221290 Mtr protein_coding Interval_36467 chr12 45296288 45297149 + 0 NA Intergenic Intergenic -62981 ENSMUSG00000089226.1 ENSMUSG00000089226 ENSMUST00000158601 Gm22076 rRNA Interval_28465 chr11 76113074 76113349 + 0 NA intron (ENSMUSG00000017288.15, intron 4 of 11) protein_coding-intron (ENSMUSG00000017288.15, intron 4 of 11) -31047 ENSMUSG00000080701.1 ENSMUSG00000080701 ENSMUST00000121617 Gm12340 unprocessed_pseudogene Interval_124257 chr5 42959377 42959579 + 0 NA Intergenic Intergenic 5131 ENSMUSG00000106622.2 ENSMUSG00000106622 ENSMUST00000199726 Gm5554 processed_pseudogene Interval_24002 chr11 29336395 29336740 + 0 NA Intergenic Intergenic 1633 ENSMUSG00000080517.1 ENSMUSG00000080517 ENSMUST00000116867 Gm23109 snRNA Interval_97635 chr2 141408400 141409435 + 0 NA intron (ENSMUSG00000068205.14, intron 5 of 16) protein_coding-intron (ENSMUSG00000068205.14, intron 5 of 17) -121926 ENSMUSG00000086450.1 ENSMUSG00000086450 ENSMUST00000151538 Macrod2os1 antisense Interval_76276 chr17 78668659 78668856 + 0 NA intron (ENSMUSG00000024077.15, intron 9 of 17) protein_coding-intron (ENSMUSG00000024077.15, intron 7 of 15) 68439 ENSMUSG00000024077.15 ENSMUSG00000024077 ENSMUST00000145480 Strn protein_coding Interval_23641 chr11 24021097 24021288 + 0 NA Intergenic Intergenic 6537 ENSMUSG00000104783.1 ENSMUSG00000104783 ENSMUST00000199670 Gm44381 miRNA Interval_154656 chr8 22389945 22390314 + 0 NA intron (ENSMUSG00000031482.9, intron 2 of 5) protein_coding-intron (ENSMUSG00000031482.9, intron 2 of 6) 8415 ENSMUSG00000031482.9 ENSMUSG00000031482 ENSMUST00000210020 Slc25a15 protein_coding Interval_126711 chr5 92195500 92195945 + 0 NA intron (ENSMUSG00000029407.10, intron 8 of 11) protein_coding-intron (ENSMUSG00000029407.10, intron 20 of 23) 2400 ENSMUSG00000084745.1 ENSMUSG00000084745 ENSMUST00000122796 Gm25290 snoRNA Interval_64988 chr16 17707061 17708992 + 0 NA intron (ENSMUSG00000012114.17, intron 1 of 16) protein_coding-intron (ENSMUSG00000012114.17, intron 1 of 17) -3642 ENSMUSG00000059150.3 ENSMUSG00000059150 ENSMUST00000170279 Rpl26-ps4 processed_pseudogene Interval_143197 chr7 4426985 4427774 + 0 NA exon (ENSMUSG00000008435.15, exon 7 of 7) protein_coding-exon (ENSMUSG00000008435.15, exon 7 of 7) 14636 ENSMUSG00000077965.1 ENSMUSG00000077965 ENSMUST00000104772 Gm24605 miRNA Interval_9022 chr1 153129211 153130980 + 0 NA exon (ENSMUSG00000026479.13, exon 20 of 24) protein_coding-exon (ENSMUSG00000026479.13, exon 20 of 24) -2861 ENSMUSG00000026479.13 ENSMUSG00000026479 ENSMUST00000188831 Lamc2 protein_coding Interval_129297 chr5 118751598 118752060 + 0 NA intron (ENSMUSG00000018076.12, intron 2 of 6) protein_coding-intron (ENSMUSG00000018076.12, intron 24 of 30) 1442 ENSMUSG00000018076.12 ENSMUSG00000018076 ENSMUST00000202787 Med13l protein_coding Interval_72863 chr17 32753474 32754461 + 0 NA intron (ENSMUSG00000117443.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000117443.1, intron 1 of 2) 231 ENSMUSG00000117443.1 ENSMUSG00000117443 ENSMUST00000234135 Gm50046 lincRNA Interval_99653 chr2 163966161 163966603 + 0 NA Intergenic Intergenic -29121 ENSMUSG00000018326.9 ENSMUSG00000018326 ENSMUST00000131288 Ywhab protein_coding Interval_90067 chr2 27699569 27699816 + 0 NA intron (ENSMUSG00000015846.15, intron 2 of 10) protein_coding-intron (ENSMUSG00000015846.15, intron 1 of 9) -25527 ENSMUSG00000015846.15 ENSMUSG00000015846 ENSMUST00000148756 Rxra protein_coding Interval_55468 chr14 87597952 87598168 + 0 NA Intergenic Intergenic 39410 ENSMUSG00000115608.1 ENSMUSG00000115608 ENSMUST00000228615 Gm48922 processed_pseudogene Interval_132959 chr5 148957118 148957539 + 0 NA promoter-TSS (ENSMUSG00000108207.2) processed_transcript-promoter-TSS (ENSMUSG00000108207.2) -1950 ENSMUSG00000087272.1 ENSMUSG00000087272 ENSMUST00000135240 Gm15409 lincRNA Interval_57827 chr15 22195196 22195416 + 0 NA Intergenic Intergenic -78764 ENSMUSG00000098700.1 ENSMUSG00000098700 ENSMUST00000184465 Gm27525 miRNA Interval_87791 chr19 55895438 55896844 + 0 NA intron (ENSMUSG00000024985.20, intron 1 of 3) protein_coding-intron (ENSMUSG00000024985.20, intron 4 of 11) 54469 ENSMUSG00000099746.1 ENSMUSG00000099746 ENSMUST00000190974 Ppnr sense_intronic Interval_104197 chr3 60403582 60403803 + 0 NA Intergenic Intergenic -60599 ENSMUSG00000107270.1 ENSMUSG00000107270 ENSMUST00000201864 Tgif1-ps processed_pseudogene Interval_164070 chr9 31279525 31281552 + 0 NA promoter-TSS (ENSMUSG00000042496.18) protein_coding-promoter-TSS (ENSMUSG00000042496.18) 454 ENSMUSG00000111246.1 ENSMUSG00000111246 ENSMUST00000214795 4930517E14Rik lincRNA Interval_48574 chr13 100415314 100415580 + 0 NA promoter-TSS (ENSMUSG00000051723.7) processed_pseudogene-promoter-TSS (ENSMUSG00000051723.7) -118 ENSMUSG00000051723.7 ENSMUSG00000051723 ENSMUST00000060994 Rpl31-ps13 processed_pseudogene Interval_121987 chr5 13027838 13028104 + 0 NA Intergenic Intergenic 15463 ENSMUSG00000096810.1 ENSMUSG00000096810 ENSMUST00000179228 Gm10481 processed_pseudogene Interval_143839 chr7 16647591 16648108 + 0 NA promoter-TSS (ENSMUSG00000108610.1) processed_pseudogene-promoter-TSS (ENSMUSG00000108610.1) -60 ENSMUSG00000108610.1 ENSMUSG00000108610 ENSMUST00000206614 Gm29725 processed_pseudogene Interval_38321 chr12 77177169 77178715 + 0 NA Intergenic Intergenic 60721 ENSMUSG00000112150.1 ENSMUSG00000112150 ENSMUST00000219513 9530018F02Rik bidirectional_promoter_lncRNA Interval_143560 chr7 12818366 12819133 + 0 NA intron (ENSMUSG00000057894.10, intron 1 of 3) protein_coding-intron (ENSMUSG00000057894.10, intron 1 of 1) -7169 ENSMUSG00000110119.1 ENSMUSG00000110119 ENSMUST00000211415 Gm45593 lincRNA Interval_96761 chr2 127831431 127833036 + 0 NA promoter-TSS (ENSMUSG00000027379.13) protein_coding-promoter-TSS (ENSMUSG00000027379.13) -6643 ENSMUSG00000027380.10 ENSMUSG00000027380 ENSMUST00000110344 Acoxl protein_coding Interval_147094 chr7 62485852 62487109 + 0 NA Intergenic Intergenic 10174 ENSMUSG00000072460.5 ENSMUSG00000072460 ENSMUST00000097132 Atp5l-ps1 processed_pseudogene Interval_156263 chr8 46618765 46619424 + 0 NA intron (ENSMUSG00000031628.9, intron 1 of 6) protein_coding-intron (ENSMUSG00000031628.9, intron 1 of 6) 1803 ENSMUSG00000031628.9 ENSMUSG00000031628 ENSMUST00000210534 Casp3 protein_coding Interval_10862 chr1 176223059 176223619 + 0 NA intron (ENSMUSG00000055214.15, intron 1 of 5) protein_coding-intron (ENSMUSG00000055214.15, intron 1 of 9) -9498 ENSMUSG00000055214.15 ENSMUSG00000055214 ENSMUST00000111166 Pld5 protein_coding Interval_143183 chr7 4301287 4302546 + 0 NA TTS (ENSMUSG00000108743.1) processed_pseudogene-TTS (ENSMUSG00000108743.1) 568 ENSMUSG00000108743.1 ENSMUSG00000108743 ENSMUST00000205425 Gm44881 processed_pseudogene Interval_70249 chr17 7232359 7233121 + 0 NA intron (ENSMUSG00000023809.10, intron 1 of 7) protein_coding-intron (ENSMUSG00000023809.10, intron 2 of 20) 62613 ENSMUSG00000023809.10 ENSMUSG00000023809 ENSMUST00000231530 Rps6ka2 protein_coding Interval_122739 chr5 24995498 24996409 + 0 NA promoter-TSS (ENSMUSG00000028944.14) protein_coding-promoter-TSS (ENSMUSG00000028944.14) 10111 ENSMUSG00000059631.6 ENSMUSG00000059631 ENSMUST00000075081 1500035N22Rik lincRNA Interval_119080 chr4 135397370 135398224 + 0 NA intron (ENSMUSG00000043924.16, intron 1 of 3) protein_coding-intron (ENSMUSG00000043924.16, intron 1 of 4) 430 ENSMUSG00000043924.16 ENSMUSG00000043924 ENSMUST00000154518 Ncmap protein_coding Interval_116751 chr4 117095593 117096768 + 0 NA promoter-TSS (ENSMUSG00000028681.11) protein_coding-promoter-TSS (ENSMUSG00000028681.11) -8740 ENSMUSG00000028681.11 ENSMUSG00000028681 ENSMUST00000123226 Ptch2 protein_coding Interval_5106 chr1 85699589 85700569 + 0 NA TTS (ENSMUSG00000026222.16) protein_coding-TTS (ENSMUSG00000026222.16) 25197 ENSMUSG00000064414.1 ENSMUSG00000064414 ENSMUST00000082480 n-R5s215 rRNA Interval_160510 chr8 110151903 110153520 + 0 NA intron (ENSMUSG00000003657.9, intron 3 of 10) protein_coding-intron (ENSMUSG00000003657.9, intron 3 of 10) 15499 ENSMUSG00000003657.9 ENSMUSG00000003657 ENSMUST00000003754 Calb2 protein_coding Interval_75206 chr17 64665908 64666869 + 0 NA intron (ENSMUSG00000024085.13, intron 6 of 21) protein_coding-intron (ENSMUSG00000024085.13, intron 6 of 21) -47231 ENSMUSG00000024085.13 ENSMUSG00000024085 ENSMUST00000169668 Man2a1 protein_coding Interval_84220 chr19 8847431 8848814 + 0 NA exon (ENSMUSG00000071657.12, exon 10 of 11) protein_coding-exon (ENSMUSG00000071657.12, exon 10 of 11) -2646 ENSMUSG00000071656.7 ENSMUSG00000071656 ENSMUST00000096257 Lrrn4cl protein_coding Interval_8104 chr1 135740794 135741338 + 0 NA intron (ENSMUSG00000026421.14, intron 2 of 5) protein_coding-intron (ENSMUSG00000026421.14, intron 2 of 5) 21005 ENSMUSG00000026421.14 ENSMUSG00000026421 ENSMUST00000027677 Csrp1 protein_coding Interval_25403 chr11 47583070 47583274 + 0 NA intron (ENSMUSG00000020354.15, intron 1 of 2) protein_coding-intron (ENSMUSG00000020354.15, intron 2 of 2) 41740 ENSMUSG00000082792.1 ENSMUSG00000082792 ENSMUST00000121420 Gm12176 processed_pseudogene Interval_110232 chr3 154652984 154653445 + 0 NA Intergenic Intergenic -3487 ENSMUSG00000103204.1 ENSMUSG00000103204 ENSMUST00000195806 Gm38139 sense_overlapping Interval_93646 chr2 75584932 75585203 + 0 NA Intergenic Intergenic 48315 ENSMUSG00000082152.1 ENSMUSG00000082152 ENSMUST00000119695 Gm13655 processed_pseudogene Interval_130289 chr5 125440880 125442416 + 0 NA promoter-TSS (ENSMUSG00000037905.13) protein_coding-promoter-TSS (ENSMUSG00000037905.13) -102 ENSMUSG00000037905.13 ENSMUSG00000037905 ENSMUST00000198811 Bri3bp protein_coding Interval_172365 chrX 13845588 13847381 + 0 NA promoter-TSS (ENSMUSG00000031012.17) protein_coding-promoter-TSS (ENSMUSG00000031012.17) -60454 ENSMUSG00000031012.17 ENSMUSG00000031012 ENSMUST00000155989 Cask protein_coding Interval_22996 chr11 18636090 18636813 + 0 NA intron (ENSMUSG00000085806.1, intron 3 of 6) lincRNA-intron (ENSMUSG00000085806.1, intron 3 of 6) -57972 ENSMUSG00000081101.1 ENSMUSG00000081101 ENSMUST00000118819 Gm12024 processed_pseudogene Interval_117478 chr4 124010545 124011243 + 0 NA Intergenic Intergenic 84660 ENSMUSG00000082515.1 ENSMUSG00000082515 ENSMUST00000118389 Gm12902 processed_pseudogene Interval_72163 chr17 28362392 28364391 + 0 NA promoter-TSS (ENSMUSG00000037446.14) protein_coding-promoter-TSS (ENSMUSG00000037446.14) -7217 ENSMUSG00000037446.14 ENSMUSG00000037446 ENSMUST00000150341 Tulp1 protein_coding Interval_13818 chr10 22879395 22880953 + 0 NA Intergenic Intergenic -60015 ENSMUSG00000045680.8 ENSMUSG00000045680 ENSMUST00000218002 Tcf21 protein_coding Interval_619 chr1 8959993 8960492 + 0 NA intron (ENSMUSG00000025909.16, intron 4 of 4) protein_coding-intron (ENSMUSG00000025909.16, intron 4 of 4) 3379 ENSMUSG00000066693.2 ENSMUSG00000066693 ENSMUST00000085919 Gm7493 processed_pseudogene Interval_134442 chr6 28760130 28762803 + 0 NA intron (ENSMUSG00000001424.14, intron 15 of 16) protein_coding-intron (ENSMUSG00000001424.14, intron 15 of 23) -34997 ENSMUSG00000103899.1 ENSMUSG00000103899 ENSMUST00000194243 Gm37940 TEC Interval_85711 chr19 29948109 29948771 + 0 NA intron (ENSMUSG00000024810.16, intron 1 of 7) protein_coding-intron (ENSMUSG00000024810.16, intron 1 of 7) 23308 ENSMUSG00000024810.16 ENSMUSG00000024810 ENSMUST00000136850 Il33 protein_coding Interval_145861 chr7 40765877 40766572 + 0 NA Intergenic Intergenic 54886 ENSMUSG00000108672.1 ENSMUSG00000108672 ENSMUST00000206420 Gm45008 TEC Interval_19330 chr10 96761793 96762040 + 0 NA Intergenic Intergenic 7912 ENSMUSG00000112588.1 ENSMUSG00000112588 ENSMUST00000218614 Gm6859 processed_pseudogene Interval_56816 chr14 122255283 122256534 + 0 NA intron (ENSMUSG00000025545.10, intron 1 of 7) protein_coding-intron (ENSMUSG00000025545.10, intron 1 of 7) -2133 ENSMUSG00000025545.10 ENSMUSG00000025545 ENSMUST00000226136 Clybl protein_coding Interval_174135 chrX 136067195 136068559 + 0 NA intron (ENSMUSG00000042750.7, intron 1 of 2) protein_coding-intron (ENSMUSG00000042750.7, intron 1 of 2) 359 ENSMUSG00000042750.7 ENSMUSG00000042750 ENSMUST00000049130 Bex2 protein_coding Interval_112027 chr4 33323795 33324106 + 0 NA promoter-TSS (ENSMUSG00000028274.17) protein_coding-promoter-TSS (ENSMUSG00000028274.17) -948 ENSMUSG00000028274.17 ENSMUSG00000028274 ENSMUST00000146870 Rngtt protein_coding Interval_90851 chr2 32963960 32965325 + 0 NA TTS (ENSMUSG00000038900.17) protein_coding-TTS (ENSMUSG00000038900.17) 1351 ENSMUSG00000065124.1 ENSMUSG00000065124 ENSMUST00000083190 Snora65 snoRNA Interval_69410 chr16 93006408 93007243 + 0 NA Intergenic Intergenic -65930 ENSMUSG00000098983.1 ENSMUSG00000098983 ENSMUST00000184529 Gm28003 miRNA Interval_88997 chr2 14150784 14151214 + 0 NA exon (ENSMUSG00000103901.1, exon 1 of 1) TEC-exon (ENSMUSG00000103901.1, exon 1 of 1) 1179 ENSMUSG00000103901.1 ENSMUSG00000103901 ENSMUST00000194683 Gm37499 TEC Interval_47665 chr13 90948478 90948763 + 0 NA intron (ENSMUSG00000021619.6, intron 4 of 6) protein_coding-intron (ENSMUSG00000021619.6, intron 5 of 7) 25403 ENSMUSG00000049517.8 ENSMUSG00000049517 ENSMUST00000224430 Rps23 protein_coding Interval_7027 chr1 122626109 122626524 + 0 NA Intergenic Intergenic 73143 ENSMUSG00000089190.1 ENSMUSG00000089190 ENSMUST00000158565 Gm25771 snoRNA Interval_2491 chr1 39720561 39721689 + 0 NA promoter-TSS (ENSMUSG00000057173.8) protein_coding-promoter-TSS (ENSMUSG00000057173.8) -128 ENSMUSG00000057173.8 ENSMUSG00000057173 ENSMUST00000126760 Rfx8 protein_coding Interval_111565 chr4 23521963 23522184 + 0 NA Intergenic Intergenic -3633 ENSMUSG00000082876.1 ENSMUSG00000082876 ENSMUST00000118402 Gm11889 processed_pseudogene Interval_36882 chr12 54937092 54938280 + 0 NA intron (ENSMUSG00000035021.13, intron 7 of 26) protein_coding-intron (ENSMUSG00000035021.13, intron 7 of 26) -7347 ENSMUSG00000035021.13 ENSMUSG00000035021 ENSMUST00000173529 Baz1a protein_coding Interval_35257 chr12 19088037 19088644 + 0 NA Intergenic Intergenic -7980 ENSMUSG00000113992.1 ENSMUSG00000113992 ENSMUST00000222116 Gm9158 unprocessed_pseudogene Interval_54567 chr14 70708726 70709041 + 0 NA promoter-TSS (ENSMUSG00000022100.14) protein_coding-promoter-TSS (ENSMUSG00000022100.14) -848 ENSMUSG00000022100.14 ENSMUSG00000022100 ENSMUST00000227550 Xpo7 protein_coding Interval_160877 chr8 114460080 114461227 + 0 NA intron (ENSMUSG00000004637.15, intron 1 of 2) protein_coding-intron (ENSMUSG00000004637.15, intron 4 of 8) 42567 ENSMUSG00000008874.3 ENSMUSG00000008874 ENSMUST00000009018 Clec3a protein_coding Interval_44456 chr13 44924261 44925812 + 0 NA intron (ENSMUSG00000057531.14, intron 7 of 8) protein_coding-intron (ENSMUSG00000057531.14, intron 8 of 9) 77016 ENSMUSG00000057531.14 ENSMUSG00000057531 ENSMUST00000223524 Dtnbp1 protein_coding Interval_136372 chr6 53884218 53884738 + 0 NA intron (ENSMUSG00000052955.5, intron 12 of 12) protein_coding-intron (ENSMUSG00000052955.5, intron 12 of 12) -12330 ENSMUSG00000094527.1 ENSMUSG00000094527 ENSMUST00000178568 Gm22910 snoRNA Interval_91927 chr2 51588841 51589479 + 0 NA Intergenic Intergenic 15188 ENSMUSG00000083472.1 ENSMUSG00000083472 ENSMUST00000118267 Gm13491 processed_pseudogene Interval_2468 chr1 39569120 39569666 + 0 NA intron (ENSMUSG00000048234.13, intron 1 of 5) protein_coding-intron (ENSMUSG00000048234.13, intron 1 of 6) 4482 ENSMUSG00000064936.1 ENSMUSG00000064936 ENSMUST00000083002 Gm23722 snoRNA Interval_143466 chr7 7049310 7050775 + 0 NA Intergenic Intergenic 13410 ENSMUSG00000109177.1 ENSMUSG00000109177 ENSMUST00000207209 Pafah1b1-ps2 unprocessed_pseudogene Interval_82709 chr18 76110847 76111030 + 0 NA intron (ENSMUSG00000044646.15, intron 1 of 2) protein_coding-intron (ENSMUSG00000044646.15, intron 3 of 4) -12467 ENSMUSG00000117797.1 ENSMUSG00000117797 ENSMUST00000236092 2900057B20Rik antisense Interval_167101 chr9 65246817 65248613 + 0 NA Intergenic Intergenic -18108 ENSMUSG00000042254.14 ENSMUSG00000042254 ENSMUST00000141382 Cilp protein_coding Interval_52568 chr14 47559552 47560901 + 0 NA intron (ENSMUSG00000037526.7, intron 3 of 10) protein_coding-intron (ENSMUSG00000037526.7, intron 2 of 9) 8178 ENSMUSG00000037526.7 ENSMUSG00000037526 ENSMUST00000228784 Atg14 protein_coding Interval_44582 chr13 46428935 46430171 + 0 NA TTS (ENSMUSG00000038132.6) protein_coding-TTS (ENSMUSG00000038132.6) 7731 ENSMUSG00000038132.6 ENSMUSG00000038132 ENSMUST00000225890 Rbm24 protein_coding Interval_47927 chr13 94433633 94434420 + 0 NA intron (ENSMUSG00000021686.6, intron 7 of 26) protein_coding-intron (ENSMUSG00000021686.6, intron 7 of 26) -38837 ENSMUSG00000021686.6 ENSMUSG00000021686 ENSMUST00000220505 Ap3b1 protein_coding Interval_11978 chr1 188043347 188043542 + 0 NA TTS (ENSMUSG00000026610.13) protein_coding-TTS (ENSMUSG00000026610.13) -34454 ENSMUSG00000103577.1 ENSMUSG00000103577 ENSMUST00000195397 9330162B11Rik antisense Interval_171554 chr9 119179418 119179834 + 0 NA intron (ENSMUSG00000070280.13, intron 3 of 10) protein_coding-intron (ENSMUSG00000070280.13, intron 4 of 11) 16896 ENSMUSG00000111197.1 ENSMUSG00000111197 ENSMUST00000213924 Gm10608 processed_pseudogene Interval_157729 chr8 72561083 72561770 + 0 NA Intergenic Intergenic 9662 ENSMUSG00000044600.14 ENSMUSG00000044600 ENSMUST00000163745 Smim7 protein_coding Interval_51581 chr14 30504283 30504651 + 0 NA intron (ENSMUSG00000021962.9, intron 4 of 9) protein_coding-intron (ENSMUSG00000021962.9, intron 4 of 9) -19240 ENSMUSG00000021962.9 ENSMUSG00000021962 ENSMUST00000225934 Dcp1a protein_coding Interval_123580 chr5 33607865 33608132 + 0 NA TTS (ENSMUSG00000037339.17) protein_coding-TTS (ENSMUSG00000037339.17) 21064 ENSMUSG00000037339.17 ENSMUSG00000037339 ENSMUST00000140043 Fam53a protein_coding Interval_53636 chr14 60463009 60463337 + 0 NA Intergenic Intergenic 21194 ENSMUSG00000114948.1 ENSMUSG00000114948 ENSMUST00000225258 Gm6066 processed_pseudogene Interval_39358 chr12 86892169 86892638 + 0 NA Intergenic Intergenic -7605 ENSMUSG00000034168.7 ENSMUSG00000034168 ENSMUST00000038422 Irf2bpl protein_coding Interval_39494 chr12 88456663 88457183 + 0 NA exon (ENSMUSG00000021044.15, exon 9 of 11) protein_coding-exon (ENSMUSG00000021044.15, exon 9 of 11) -14704 ENSMUSG00000113087.1 ENSMUSG00000113087 ENSMUST00000221624 4930473H19Rik antisense Interval_44596 chr13 46594889 46595652 + 0 NA intron (ENSMUSG00000021373.16, intron 4 of 9) protein_coding-intron (ENSMUSG00000021373.16, intron 4 of 12) 24510 ENSMUSG00000114596.1 ENSMUSG00000114596 ENSMUST00000225040 Gm47523 antisense Interval_90261 chr2 29389830 29390040 + 0 NA intron (ENSMUSG00000026799.15, intron 2 of 4) protein_coding-intron (ENSMUSG00000026799.15, intron 2 of 7) 6524 ENSMUSG00000086994.1 ENSMUSG00000086994 ENSMUST00000153600 Gm13402 antisense Interval_153737 chr8 5841162 5841950 + 0 NA Intergenic Intergenic 136129 ENSMUSG00000093281.1 ENSMUSG00000093281 ENSMUST00000175540 Gm22565 miRNA Interval_26407 chr11 57684501 57685303 + 0 NA intron (ENSMUSG00000020520.14, intron 1 of 2) protein_coding-intron (ENSMUSG00000020520.14, intron 1 of 11) -27076 ENSMUSG00000086933.1 ENSMUSG00000086933 ENSMUST00000143009 4933426K07Rik antisense Interval_2207 chr1 37042332 37043552 + 0 NA intron (ENSMUSG00000050122.19, intron 3 of 26) protein_coding-intron (ENSMUSG00000050122.19, intron 2 of 24) 13609 ENSMUSG00000050122.19 ENSMUSG00000050122 ENSMUST00000194320 Vwa3b protein_coding Interval_124089 chr5 38203655 38203846 + 0 NA promoter-TSS (ENSMUSG00000029127.15) protein_coding-promoter-TSS (ENSMUSG00000029127.15) 47 ENSMUSG00000029127.15 ENSMUSG00000029127 ENSMUST00000137577 Zbtb49 protein_coding Interval_91607 chr2 44537997 44539617 + 0 NA Intergenic Intergenic 109872 ENSMUSG00000088124.1 ENSMUSG00000088124 ENSMUST00000157499 Gm22867 snRNA Interval_88917 chr2 12867860 12868101 + 0 NA Intergenic Intergenic -109959 ENSMUSG00000026730.12 ENSMUSG00000026730 ENSMUST00000195521 Pter protein_coding Interval_36527 chr12 48425007 48425897 + 0 NA Intergenic Intergenic -69767 ENSMUSG00000112085.1 ENSMUSG00000112085 ENSMUST00000218671 Gm48587 unprocessed_pseudogene Interval_47762 chr13 92434201 92434636 + 0 NA intron (ENSMUSG00000045034.12, intron 3 of 3) protein_coding-intron (ENSMUSG00000045034.12, intron 4 of 4) -7194 ENSMUSG00000090907.1 ENSMUSG00000090907 ENSMUST00000163690 C030017D09Rik antisense Interval_104954 chr3 79247350 79248469 + 0 NA intron (ENSMUSG00000062232.14, intron 1 of 29) protein_coding-intron (ENSMUSG00000062232.14, intron 1 of 29) 34990 ENSMUSG00000104585.1 ENSMUSG00000104585 ENSMUST00000200412 4921511C10Rik antisense Interval_157349 chr8 69763638 69764172 + 0 NA TTS (ENSMUSG00000043090.18) protein_coding-TTS (ENSMUSG00000043090.18) 10981 ENSMUSG00000092544.8 ENSMUSG00000092544 ENSMUST00000126915 Gm20422 protein_coding Interval_45248 chr13 53481838 53482085 + 0 NA Intergenic Intergenic -8887 ENSMUSG00000021469.9 ENSMUSG00000021469 ENSMUST00000188606 Msx2 protein_coding Interval_4813 chr1 79656362 79657070 + 0 NA intron (ENSMUSG00000054702.14, intron 1 of 4) protein_coding-intron (ENSMUSG00000054702.14, intron 1 of 4) 15256 ENSMUSG00000054702.14 ENSMUSG00000054702 ENSMUST00000160706 Ap1s3 protein_coding Interval_85132 chr19 23087393 23088115 + 0 NA Intergenic Intergenic -11830 ENSMUSG00000097930.2 ENSMUSG00000097930 ENSMUST00000181623 C330002G04Rik lincRNA Interval_16975 chr10 70243052 70243454 + 0 NA Intergenic Intergenic -23726 ENSMUSG00000037762.6 ENSMUSG00000037762 ENSMUST00000155933 Slc16a9 protein_coding Interval_34285 chr11 121975964 121976524 + 0 NA Intergenic Intergenic -5559 ENSMUSG00000082831.1 ENSMUSG00000082831 ENSMUST00000122407 Gm12591 unprocessed_pseudogene Interval_16042 chr10 60263216 60263450 + 0 NA Intergenic Intergenic -14295 ENSMUSG00000004207.14 ENSMUSG00000004207 ENSMUST00000165878 Psap protein_coding Interval_85277 chr19 24301019 24302699 + 0 NA intron (ENSMUSG00000024867.14, intron 2 of 2) protein_coding-intron (ENSMUSG00000024867.14, intron 14 of 14) 12143 ENSMUSG00000082107.1 ENSMUSG00000082107 ENSMUST00000118970 Gm16216 processed_pseudogene Interval_74578 chr17 53512399 53513291 + 0 NA intron (ENSMUSG00000044957.3, intron 2 of 2) protein_coding-intron (ENSMUSG00000044957.3, intron 2 of 2) -11899 ENSMUSG00000117128.1 ENSMUSG00000117128 ENSMUST00000232747 Gm49915 antisense Interval_77523 chr17 90766541 90768646 + 0 NA intron (ENSMUSG00000024109.18, intron 1 of 12) protein_coding-intron (ENSMUSG00000024109.18, intron 4 of 20) 26413 ENSMUSG00000092549.1 ENSMUSG00000092549 ENSMUST00000173765 Gm20491 processed_pseudogene Interval_55081 chr14 77799901 77800903 + 0 NA Intergenic Intergenic -1434 ENSMUSG00000075512.5 ENSMUSG00000075512 ENSMUST00000228721 Gm1587 lincRNA Interval_67245 chr16 44735823 44736374 + 0 NA TTS (ENSMUSG00000022668.10) protein_coding-TTS (ENSMUSG00000022668.10) 10265 ENSMUSG00000022668.10 ENSMUSG00000022668 ENSMUST00000162479 Gtpbp8 protein_coding Interval_63976 chr16 4948651 4948909 + 0 NA promoter-TSS (ENSMUSG00000022515.6) protein_coding-promoter-TSS (ENSMUSG00000022515.6) -1043 ENSMUSG00000022515.6 ENSMUSG00000022515 ENSMUST00000229077 Anks3 protein_coding Interval_61249 chr15 80219214 80221662 + 0 NA Intergenic Intergenic 7976 ENSMUSG00000115962.1 ENSMUSG00000115962 ENSMUST00000231034 4930588D02Rik TEC Interval_152113 chr7 129478325 129478548 + 0 NA Intergenic Intergenic -75346 ENSMUSG00000108713.1 ENSMUSG00000108713 ENSMUST00000206093 Gm33027 lincRNA Interval_13534 chr10 19288995 19289409 + 0 NA Intergenic Intergenic -1787 ENSMUSG00000110917.1 ENSMUSG00000110917 ENSMUST00000213234 Gm33056 lincRNA Interval_61379 chr15 81215929 81216196 + 0 NA Intergenic Intergenic -6902 ENSMUSG00000116122.1 ENSMUSG00000116122 ENSMUST00000230413 Gm49537 processed_pseudogene Interval_45063 chr13 51815832 51816125 + 0 NA Intergenic Intergenic -22314 ENSMUSG00000021451.16 ENSMUSG00000021451 ENSMUST00000155896 Sema4d protein_coding Interval_85960 chr19 34232307 34233455 + 0 NA intron (ENSMUSG00000024776.18, intron 1 of 2) protein_coding-intron (ENSMUSG00000024776.18, intron 5 of 10) 21349 ENSMUSG00000035783.9 ENSMUSG00000035783 ENSMUST00000238147 Acta2 protein_coding Interval_124954 chr5 61839517 61839697 + 0 NA Intergenic Intergenic 30791 ENSMUSG00000089992.3 ENSMUSG00000089992 ENSMUST00000053876 G6pd2 protein_coding Interval_52419 chr14 45878349 45878895 + 0 NA intron (ENSMUSG00000085866.1, intron 1 of 3) lincRNA-intron (ENSMUSG00000085866.1, intron 1 of 3) -20076 ENSMUSG00000084276.1 ENSMUSG00000084276 ENSMUST00000121261 Gm8317 processed_pseudogene Interval_119153 chr4 135875912 135876984 + 0 NA Intergenic Intergenic -3387 ENSMUSG00000028675.12 ENSMUSG00000028675 ENSMUST00000180300 Pnrc2 protein_coding Interval_108329 chr3 124066290 124067330 + 0 NA Intergenic Intergenic -81706 ENSMUSG00000081939.2 ENSMUSG00000081939 ENSMUST00000118055 Gm15399 processed_pseudogene Interval_103460 chr3 41750075 41750320 + 0 NA promoter-TSS (ENSMUSG00000025766.14) protein_coding-promoter-TSS (ENSMUSG00000025766.14) 3712 ENSMUSG00000025766.14 ENSMUSG00000025766 ENSMUST00000195030 D3Ertd751e protein_coding Interval_88492 chr2 5606907 5607477 + 0 NA intron (ENSMUSG00000039145.16, intron 1 of 1) protein_coding-intron (ENSMUSG00000039145.16, intron 1 of 10) 3621 ENSMUSG00000082013.1 ENSMUSG00000082013 ENSMUST00000117145 Gm13216 processed_pseudogene Interval_83514 chr18 88683332 88683976 + 0 NA intron (ENSMUSG00000056153.15, intron 1 of 4) protein_coding-intron (ENSMUSG00000056153.15, intron 7 of 7) -25040 ENSMUSG00000118247.1 ENSMUSG00000118247 ENSMUST00000235328 Gm7662 processed_pseudogene Interval_47869 chr13 94027327 94027931 + 0 NA Intergenic Intergenic -26214 ENSMUSG00000114174.1 ENSMUSG00000114174 ENSMUST00000223240 Cycs-ps3 processed_pseudogene Interval_94470 chr2 91441660 91442337 + 0 NA intron (ENSMUSG00000040591.18, intron 1 of 3) protein_coding-intron (ENSMUSG00000040591.18, intron 1 of 8) 2645 ENSMUSG00000040591.18 ENSMUSG00000040591 ENSMUST00000141262 1110051M20Rik protein_coding Interval_97186 chr2 132124336 132124676 + 0 NA intron (ENSMUSG00000027340.15, intron 1 of 6) protein_coding-intron (ENSMUSG00000027340.15, intron 1 of 15) -20027 ENSMUSG00000086756.1 ENSMUSG00000086756 ENSMUST00000131603 Gm14051 antisense Interval_134737 chr6 31096063 31096746 + 0 NA intron (ENSMUSG00000044471.12, intron 2 of 5) lincRNA-intron (ENSMUSG00000044471.12, intron 3 of 3) -6442 ENSMUSG00000087312.1 ENSMUSG00000087312 ENSMUST00000146766 Gm13833 lincRNA Interval_19184 chr10 95353862 95354872 + 0 NA promoter-TSS (ENSMUSG00000100550.2) lincRNA-promoter-TSS (ENSMUSG00000100550.2) -521 ENSMUSG00000100550.2 ENSMUSG00000100550 ENSMUST00000219492 2310039L15Rik lincRNA Interval_54434 chr14 69731812 69733231 + 0 NA promoter-TSS (ENSMUSG00000034190.9) protein_coding-promoter-TSS (ENSMUSG00000034190.9) 20 ENSMUSG00000034190.9 ENSMUSG00000034190 ENSMUST00000224601 Chmp7 protein_coding Interval_123835 chr5 35831727 35832332 + 0 NA intron (ENSMUSG00000029095.17, intron 4 of 8) protein_coding-intron (ENSMUSG00000029095.17, intron 8 of 19) -25865 ENSMUSG00000029095.17 ENSMUSG00000029095 ENSMUST00000153529 Ablim2 protein_coding Interval_67159 chr16 44025926 44026671 + 0 NA intron (ENSMUSG00000036292.14, intron 6 of 17) protein_coding-intron (ENSMUSG00000036292.14, intron 1 of 12) 12446 ENSMUSG00000093912.1 ENSMUSG00000093912 ENSMUST00000175563 Mir3470b miRNA Interval_109598 chr3 144977334 144977986 + 0 NA intron (ENSMUSG00000106361.1, intron 1 of 2) macro_lncRNA-intron (ENSMUSG00000106361.1, intron 1 of 2) -2615 ENSMUSG00000068547.7 ENSMUSG00000068547 ENSMUST00000238960 Clca4a protein_coding Interval_35752 chr12 28871015 28871329 + 0 NA Intergenic Intergenic 15210 ENSMUSG00000113325.1 ENSMUSG00000113325 ENSMUST00000220624 Gm48080 processed_pseudogene Interval_5733 chr1 91328013 91329160 + 0 NA intron (ENSMUSG00000049515.12, intron 4 of 7) protein_coding-intron (ENSMUSG00000049515.12, intron 4 of 8) 6453 ENSMUSG00000049515.12 ENSMUSG00000049515 ENSMUST00000176156 Espnl protein_coding Interval_71521 chr17 24273203 24273584 + 0 NA intron (ENSMUSG00000035435.17, intron 26 of 30) protein_coding-intron (ENSMUSG00000035435.17, intron 25 of 29) -22046 ENSMUSG00000072082.7 ENSMUSG00000072082 ENSMUST00000234096 Ccnf protein_coding Interval_110466 chr3 158809626 158809925 + 0 NA Intergenic Intergenic -150671 ENSMUSG00000097966.1 ENSMUSG00000097966 ENSMUST00000183173 Gm9423 processed_pseudogene Interval_16027 chr10 60193722 60194934 + 0 NA promoter-TSS (ENSMUSG00000057337.13) protein_coding-promoter-TSS (ENSMUSG00000057337.13) -89 ENSMUSG00000057337.13 ENSMUSG00000057337 ENSMUST00000167915 Chst3 protein_coding Interval_162194 chr8 125840770 125840987 + 0 NA intron (ENSMUSG00000060212.13, intron 15 of 16) protein_coding-intron (ENSMUSG00000060212.13, intron 15 of 33) -11845 ENSMUSG00000060212.13 ENSMUSG00000060212 ENSMUST00000187772 Pcnx2 protein_coding Interval_125251 chr5 65676202 65676704 + 0 NA intron (ENSMUSG00000029202.12, intron 2 of 32) protein_coding-intron (ENSMUSG00000029202.12, intron 2 of 31) -2293 ENSMUSG00000107158.1 ENSMUSG00000107158 ENSMUST00000202644 Gm42728 TEC Interval_44182 chr13 41662349 41663025 + 0 NA Intergenic Intergenic 13244 ENSMUSG00000054258.9 ENSMUSG00000054258 ENSMUST00000067176 Gm5082 lincRNA Interval_38399 chr12 78705938 78706433 + 0 NA intron (ENSMUSG00000056987.8, intron 2 of 4) protein_coding-intron (ENSMUSG00000056987.8, intron 2 of 8) 14503 ENSMUSG00000056987.8 ENSMUSG00000056987 ENSMUST00000219314 Fam71d protein_coding Interval_171001 chr9 113643393 113643819 + 0 NA Intergenic Intergenic -1552 ENSMUSG00000111364.1 ENSMUSG00000111364 ENSMUST00000213455 Gm36745 lincRNA Interval_126395 chr5 87931617 87931935 + 0 NA TTS (ENSMUSG00000001622.15) protein_coding-TTS (ENSMUSG00000001622.15) 3965 ENSMUSG00000001622.15 ENSMUSG00000001622 ENSMUST00000148793 Csn3 protein_coding Interval_69489 chr16 93838327 93838533 + 0 NA intron (ENSMUSG00000039456.10, intron 1 of 10) protein_coding-intron (ENSMUSG00000039456.10, intron 1 of 16) -5411 ENSMUSG00000116927.1 ENSMUSG00000116927 ENSMUST00000231503 Gm30881 antisense Interval_3012 chr1 52158547 52159439 + 0 NA intron (ENSMUSG00000026104.14, intron 5 of 5) protein_coding-intron (ENSMUSG00000026104.14, intron 24 of 24) -23663 ENSMUSG00000099569.1 ENSMUSG00000099569 ENSMUST00000185261 Gm18301 unprocessed_pseudogene Interval_81843 chr18 65208294 65208520 + 0 NA exon (ENSMUSG00000024589.18, exon 27 of 30) protein_coding-exon (ENSMUSG00000024589.18, exon 27 of 30) -35880 ENSMUSG00000118017.1 ENSMUSG00000118017 ENSMUST00000235231 Gm29966 lincRNA Interval_80578 chr18 44398596 44399236 + 0 NA intron (ENSMUSG00000024472.9, intron 2 of 10) protein_coding-intron (ENSMUSG00000024472.9, intron 2 of 10) 18414 ENSMUSG00000024472.9 ENSMUSG00000024472 ENSMUST00000025350 Dcp2 protein_coding Interval_137430 chr6 72223557 72224638 + 0 NA intron (ENSMUSG00000037621.8, intron 2 of 2) protein_coding-intron (ENSMUSG00000037621.8, intron 1 of 2) 11133 ENSMUSG00000037621.8 ENSMUSG00000037621 ENSMUST00000206553 Atoh8 protein_coding Interval_61103 chr15 79242754 79243997 + 0 NA intron (ENSMUSG00000068206.13, intron 6 of 9) protein_coding-intron (ENSMUSG00000068206.13, intron 6 of 12) -1502 ENSMUSG00000068206.13 ENSMUSG00000068206 ENSMUST00000171581 Pick1 protein_coding Interval_169583 chr9 99255942 99257077 + 0 NA intron (ENSMUSG00000056267.14, intron 3 of 15) protein_coding-intron (ENSMUSG00000056267.14, intron 3 of 17) 3698 ENSMUSG00000111651.1 ENSMUSG00000111651 ENSMUST00000214024 Gm47199 processed_pseudogene Interval_58682 chr15 37019986 37021056 + 0 NA intron (ENSMUSG00000097259.2, intron 2 of 6) antisense-intron (ENSMUSG00000097259.2, intron 2 of 6) 12938 ENSMUSG00000097259.2 ENSMUSG00000097259 ENSMUST00000227544 Gm26766 antisense Interval_101854 chr3 10124260 10124456 + 0 NA Intergenic Intergenic -34403 ENSMUSG00000103045.1 ENSMUSG00000103045 ENSMUST00000194684 Gm37308 processed_pseudogene Interval_14703 chr10 39169944 39172359 + 0 NA exon (ENSMUSG00000111055.1, exon 1 of 1) lincRNA-exon (ENSMUSG00000111055.1, exon 1 of 1) 2101 ENSMUSG00000111055.1 ENSMUSG00000111055 ENSMUST00000215835 D030034A15Rik lincRNA Interval_151897 chr7 127397451 127398224 + 0 NA promoter-TSS (ENSMUSG00000074184.5) processed_pseudogene-promoter-TSS (ENSMUSG00000074184.5) -141 ENSMUSG00000074184.5 ENSMUSG00000074184 ENSMUST00000122370 Smt3h2-ps2 processed_pseudogene Interval_80291 chr18 38890112 38890862 + 0 NA intron (ENSMUSG00000036585.16, intron 1 of 4) protein_coding-intron (ENSMUSG00000036585.16, intron 1 of 3) -2230 ENSMUSG00000117994.1 ENSMUSG00000117994 ENSMUST00000156167 Gm5820 lincRNA Interval_152302 chr7 131573024 131573278 + 0 NA intron (ENSMUSG00000030849.18, intron 2 of 6) protein_coding-intron (ENSMUSG00000030849.18, intron 2 of 6) 12744 ENSMUSG00000066979.6 ENSMUSG00000066979 ENSMUST00000207442 Bub3 protein_coding Interval_38838 chr12 83210752 83212235 + 0 NA Intergenic Intergenic 89279 ENSMUSG00000103387.1 ENSMUSG00000103387 ENSMUST00000192978 1700030I03Rik TEC Interval_130257 chr5 125251892 125253299 + 0 NA intron (ENSMUSG00000105039.1, intron 1 of 3) lincRNA-intron (ENSMUSG00000105039.1, intron 1 of 3) 20220 ENSMUSG00000105039.1 ENSMUSG00000105039 ENSMUST00000198586 Gm32585 lincRNA Interval_162910 chr9 12900557 12901378 + 0 NA Intergenic Intergenic 35534 ENSMUSG00000098228.1 ENSMUSG00000098228 ENSMUST00000182425 Gm21070 processed_pseudogene Interval_61700 chr15 83483632 83484519 + 0 NA exon (ENSMUSG00000022442.16, exon 12 of 12) protein_coding-exon (ENSMUSG00000022442.16, exon 12 of 12) 26718 ENSMUSG00000022442.16 ENSMUSG00000022442 ENSMUST00000154401 Ttll1 protein_coding Interval_115737 chr4 103166006 103167710 + 0 NA Intergenic Intergenic 47468 ENSMUSG00000028522.16 ENSMUSG00000028522 ENSMUST00000128536 Mier1 protein_coding Interval_93967 chr2 80275029 80275579 + 0 NA Intergenic Intergenic -17168 ENSMUSG00000050114.7 ENSMUSG00000050114 ENSMUST00000057072 Prdx6b protein_coding Interval_101164 chr2 178691456 178692759 + 0 NA Intergenic Intergenic 231477 ENSMUSG00000039155.15 ENSMUSG00000039155 ENSMUST00000176869 Cdh26 protein_coding Interval_150808 chr7 114844054 114844267 + 0 NA intron (ENSMUSG00000048782.15, intron 10 of 12) protein_coding-intron (ENSMUSG00000048782.15, intron 10 of 12) 10411 ENSMUSG00000108683.1 ENSMUSG00000108683 ENSMUST00000206842 Gm45017 lincRNA Interval_13163 chr10 12694543 12695445 + 0 NA intron (ENSMUSG00000019820.11, intron 25 of 74) protein_coding-intron (ENSMUSG00000019820.11, intron 24 of 73) -6132 ENSMUSG00000019820.11 ENSMUSG00000019820 ENSMUST00000219135 Utrn protein_coding Interval_95476 chr2 109932067 109932517 + 0 NA intron (ENSMUSG00000050199.13, intron 1 of 16) protein_coding-intron (ENSMUSG00000050199.13, intron 1 of 17) -18973 ENSMUSG00000063751.6 ENSMUSG00000063751 ENSMUST00000146110 Platr8 processed_transcript Interval_171290 chr9 116104506 116105023 + 0 NA intron (ENSMUSG00000032440.13, intron 6 of 7) protein_coding-intron (ENSMUSG00000032440.13, intron 5 of 6) -63700 ENSMUSG00000080848.3 ENSMUSG00000080848 ENSMUST00000117563 Gm9385 processed_pseudogene Interval_29326 chr11 82960432 82960661 + 0 NA promoter-TSS (ENSMUSG00000086327.2) antisense-promoter-TSS (ENSMUSG00000086327.2) 80 ENSMUSG00000086327.2 ENSMUSG00000086327 ENSMUST00000216469 Slfn5os antisense Interval_138066 chr6 84933239 84933818 + 0 NA intron (ENSMUSG00000033769.16, intron 5 of 13) protein_coding-intron (ENSMUSG00000033769.16, intron 6 of 16) 12405 ENSMUSG00000108012.1 ENSMUSG00000108012 ENSMUST00000204154 Gm44012 antisense Interval_166372 chr9 58722353 58722908 + 0 NA intron (ENSMUSG00000074269.10, intron 1 of 2) protein_coding-intron (ENSMUSG00000074269.10, intron 1 of 5) -26619 ENSMUSG00000093473.1 ENSMUSG00000093473 ENSMUST00000177528 Gm20620 processed_pseudogene Interval_94561 chr2 92240500 92240848 + 0 NA intron (ENSMUSG00000058318.15, intron 6 of 6) protein_coding-intron (ENSMUSG00000058318.15, intron 4 of 15) 7569 ENSMUSG00000083951.1 ENSMUSG00000083951 ENSMUST00000122371 Gm13786 processed_pseudogene Interval_2657 chr1 43047858 43048516 + 0 NA exon (ENSMUSG00000070939.9, exon 13 of 13) protein_coding-exon (ENSMUSG00000070939.9, exon 13 of 13) -8080 ENSMUSG00000100269.1 ENSMUSG00000100269 ENSMUST00000185980 Gm28782 antisense Interval_3285 chr1 55682834 55683114 + 0 NA intron (ENSMUSG00000038349.10, intron 1 of 5) protein_coding-intron (ENSMUSG00000038349.10, intron 1 of 5) -19051 ENSMUSG00000038349.10 ENSMUSG00000038349 ENSMUST00000187059 Plcl1 protein_coding Interval_75856 chr17 71874043 71874528 + 0 NA intron (ENSMUSG00000055471.7, intron 27 of 28) protein_coding-intron (ENSMUSG00000055471.7, intron 27 of 28) 45778 ENSMUSG00000024059.10 ENSMUSG00000024059 ENSMUST00000230290 Clip4 protein_coding Interval_49594 chr13 113316561 113316793 + 0 NA intron (ENSMUSG00000021763.17, intron 1 of 9) protein_coding-intron (ENSMUSG00000021763.17, intron 1 of 9) 23518 ENSMUSG00000021763.17 ENSMUSG00000021763 ENSMUST00000135096 BC067074 protein_coding Interval_86284 chr19 38386883 38387700 + 0 NA intron (ENSMUSG00000118335.1, intron 1 of 1) processed_pseudogene-intron (ENSMUSG00000118335.1, intron 1 of 1) 812 ENSMUSG00000118335.1 ENSMUSG00000118335 ENSMUST00000235630 Gm18936 processed_pseudogene Interval_123241 chr5 30850050 30851059 + 0 NA intron (ENSMUSG00000029166.14, intron 1 of 1) protein_coding-intron (ENSMUSG00000029166.14, intron 1 of 6) -3245 ENSMUSG00000029166.14 ENSMUSG00000029166 ENSMUST00000202025 Mapre3 protein_coding Interval_17549 chr10 77670568 77670808 + 0 NA Intergenic Intergenic 10399 ENSMUSG00000112912.1 ENSMUSG00000112912 ENSMUST00000220424 Gm48160 processed_pseudogene Interval_154558 chr8 19468785 19469565 + 0 NA Intergenic Intergenic 5557 ENSMUSG00000080894.1 ENSMUSG00000080894 ENSMUST00000118178 Defa-ps15 unprocessed_pseudogene Interval_106021 chr3 90708504 90710712 + 0 NA promoter-TSS (ENSMUSG00000105819.1) processed_pseudogene-promoter-TSS (ENSMUSG00000105819.1) 6 ENSMUSG00000105819.1 ENSMUSG00000105819 ENSMUST00000200512 Gm42579 processed_pseudogene Interval_99327 chr2 159068733 159069880 + 0 NA promoter-TSS (ENSMUSG00000104628.1) miRNA-promoter-TSS (ENSMUSG00000104628.1) -557 ENSMUSG00000104628.1 ENSMUSG00000104628 ENSMUST00000196974 Gm44319 miRNA Interval_98141 chr2 148706354 148707461 + 0 NA exon (ENSMUSG00000027438.14, exon 4 of 4) protein_coding-exon (ENSMUSG00000027438.14, exon 4 of 4) 22295 ENSMUSG00000027439.9 ENSMUSG00000027439 ENSMUST00000151362 Gzf1 protein_coding Interval_93263 chr2 71544174 71544987 + 0 NA TTS (ENSMUSG00000023391.8) protein_coding-TTS (ENSMUSG00000023391.8) 1370 ENSMUSG00000023391.8 ENSMUSG00000023391 ENSMUST00000134249 Dlx2 protein_coding Interval_152328 chr7 131846122 131847812 + 0 NA intron (ENSMUSG00000109014.1, intron 2 of 3) protein_coding-intron (ENSMUSG00000030849.18, intron 2 of 6) 22954 ENSMUSG00000109014.1 ENSMUSG00000109014 ENSMUST00000208353 Gm44546 lincRNA Interval_28485 chr11 76294099 76295916 + 0 NA intron (ENSMUSG00000020844.6, intron 1 of 7) protein_coding-intron (ENSMUSG00000020844.6, intron 1 of 7) 45795 ENSMUSG00000038046.4 ENSMUSG00000038046 ENSMUST00000155526 Mrm3 protein_coding Interval_88378 chr2 4565417 4565668 + 0 NA promoter-TSS (ENSMUSG00000026657.17) protein_coding-promoter-TSS (ENSMUSG00000026657.17) 21745 ENSMUSG00000086018.7 ENSMUSG00000086018 ENSMUST00000137801 Gm13179 antisense Interval_122473 chr5 23284501 23285750 + 0 NA Intergenic Intergenic -5214 ENSMUSG00000098903.1 ENSMUSG00000098903 ENSMUST00000184168 Gm28022 miRNA Interval_46174 chr13 62224933 62225161 + 0 NA intron (ENSMUSG00000074867.4, intron 1 of 3) protein_coding-intron (ENSMUSG00000074867.4, intron 3 of 4) -47714 ENSMUSG00000113081.1 ENSMUSG00000113081 ENSMUST00000221763 Gm3333 transcribed_processed_pseudogene Interval_135129 chr6 36088996 36089312 + 0 NA Intergenic Intergenic 99945 ENSMUSG00000107089.1 ENSMUSG00000107089 ENSMUST00000202337 Gm43443 TEC Interval_142231 chr6 139460744 139461373 + 0 NA Intergenic Intergenic 40918 ENSMUSG00000092164.2 ENSMUSG00000092164 ENSMUST00000170650 Rergl protein_coding Interval_92777 chr2 65369819 65370460 + 0 NA Intergenic Intergenic -5739 ENSMUSG00000099184.1 ENSMUSG00000099184 ENSMUST00000184194 Mir6337 miRNA Interval_151970 chr7 127875416 127877399 + 0 NA promoter-TSS (ENSMUSG00000049728.14) protein_coding-promoter-TSS (ENSMUSG00000049728.14) -273 ENSMUSG00000049728.14 ENSMUSG00000049728 ENSMUST00000150961 Zfp668 protein_coding Interval_660 chr1 9648452 9649677 + 0 NA Intergenic Intergenic -8482 ENSMUSG00000099827.1 ENSMUSG00000099827 ENSMUST00000191209 Gm29520 lincRNA Interval_144721 chr7 27765123 27765747 + 0 NA promoter-TSS (ENSMUSG00000109143.1) transcribed_unprocessed_pseudogene-promoter-TSS (ENSMUSG00000109143.1) -5070 ENSMUSG00000109143.1 ENSMUSG00000109143 ENSMUST00000208942 Gm10046 transcribed_unprocessed_pseudogene Interval_106050 chr3 91929465 91929920 + 0 NA Intergenic Intergenic 81173 ENSMUSG00000077085.1 ENSMUSG00000077085 ENSMUST00000103897 Gm23697 miRNA Interval_73888 chr17 45251128 45252067 + 0 NA Intergenic Intergenic 41631 ENSMUSG00000096425.1 ENSMUSG00000096425 ENSMUST00000178626 Gm24979 miRNA Interval_109405 chr3 141862425 141863434 + 0 NA intron (ENSMUSG00000052430.15, intron 7 of 11) protein_coding-intron (ENSMUSG00000052430.15, intron 6 of 10) 68579 ENSMUSG00000052430.15 ENSMUSG00000052430 ENSMUST00000106230 Bmpr1b protein_coding Interval_129609 chr5 121299412 121299997 + 0 NA TTS (ENSMUSG00000042744.16) protein_coding-TTS (ENSMUSG00000042744.16) 13474 ENSMUSG00000042744.16 ENSMUSG00000042744 ENSMUST00000130655 Hectd4 protein_coding Interval_43116 chr13 24297034 24297693 + 0 NA Intergenic Intergenic -5558 ENSMUSG00000083409.1 ENSMUSG00000083409 ENSMUST00000119226 Gm11340 processed_pseudogene Interval_120775 chr4 150582053 150582627 + 0 NA intron (ENSMUSG00000039852.17, intron 3 of 4) protein_coding-intron (ENSMUSG00000039852.17, intron 6 of 16) -13796 ENSMUSG00000085213.1 ENSMUSG00000085213 ENSMUST00000128800 Gm13091 antisense Interval_156135 chr8 45025150 45026093 + 0 NA exon (ENSMUSG00000070047.14, exon 9 of 26) protein_coding-exon (ENSMUSG00000070047.14, exon 9 of 26) -3236 ENSMUSG00000097491.1 ENSMUSG00000097491 ENSMUST00000180753 Gm2366 antisense Interval_65191 chr16 20443320 20444253 + 0 NA TTS (ENSMUSG00000093649.1) unprocessed_pseudogene-TTS (ENSMUSG00000093649.1) -1867 ENSMUSG00000088049.1 ENSMUSG00000088049 ENSMUST00000157424 Gm23332 misc_RNA Interval_161163 chr8 117934360 117935642 + 0 NA Intergenic Intergenic 132939 ENSMUSG00000074065.4 ENSMUSG00000074065 ENSMUST00000098368 Gm10617 pseudogene Interval_58122 chr15 28102978 28103182 + 0 NA intron (ENSMUSG00000115773.1, intron 1 of 5) lincRNA-intron (ENSMUSG00000115773.1, intron 1 of 5) 15372 ENSMUSG00000115773.1 ENSMUSG00000115773 ENSMUST00000228807 Gm31458 lincRNA Interval_144219 chr7 20063879 20064895 + 0 NA intron (ENSMUSG00000060508.16, intron 7 of 7) protein_coding-intron (ENSMUSG00000060508.16, intron 7 of 7) -8390 ENSMUSG00000109103.1 ENSMUSG00000109103 ENSMUST00000207706 Gm18877 processed_pseudogene Interval_72706 chr17 31653326 31653769 + 0 NA TTS (ENSMUSG00000061613.13) protein_coding-TTS (ENSMUSG00000061613.13) 5217 ENSMUSG00000061613.13 ENSMUSG00000061613 ENSMUST00000235969 U2af1 protein_coding Interval_17608 chr10 78159345 78160653 + 0 NA Intergenic Intergenic 7443 ENSMUSG00000053329.7 ENSMUSG00000053329 ENSMUST00000218286 Gatd3a protein_coding Interval_33324 chr11 115932936 115934023 + 0 NA promoter-TSS (ENSMUSG00000020752.11) protein_coding-promoter-TSS (ENSMUSG00000020752.11) -94 ENSMUSG00000020755.9 ENSMUSG00000020755 ENSMUST00000021101 Sap30bp protein_coding Interval_19854 chr10 110489174 110489360 + 0 NA Intergenic Intergenic 8630 ENSMUSG00000111948.1 ENSMUSG00000111948 ENSMUST00000218914 Gm47055 processed_pseudogene Interval_154164 chr8 13175757 13176650 + 0 NA TTS (ENSMUSG00000031447.7) protein_coding-TTS (ENSMUSG00000031447.7) 3022 ENSMUSG00000031447.7 ENSMUSG00000031447 ENSMUST00000209709 Lamp1 protein_coding Interval_17319 chr10 75837087 75838019 + 0 NA promoter-TSS (ENSMUSG00000033318.7) protein_coding-promoter-TSS (ENSMUSG00000033318.7) -186 ENSMUSG00000033318.7 ENSMUSG00000033318 ENSMUST00000218745 Gstt2 protein_coding Interval_86420 chr19 40349890 40350510 + 0 NA intron (ENSMUSG00000025006.18, intron 7 of 19) protein_coding-intron (ENSMUSG00000025006.18, intron 10 of 21) 26674 ENSMUSG00000025006.18 ENSMUSG00000025006 ENSMUST00000225293 Sorbs1 protein_coding Interval_66065 chr16 31366580 31366826 + 0 NA Intergenic Intergenic 12430 ENSMUSG00000101234.1 ENSMUSG00000101234 ENSMUST00000190494 1700007E05Rik transcribed_processed_pseudogene Interval_138482 chr6 88557612 88558380 + 0 NA intron (ENSMUSG00000033182.12, intron 4 of 4) protein_coding-intron (ENSMUSG00000033182.12, intron 5 of 5) 38983 ENSMUSG00000107698.1 ENSMUSG00000107698 ENSMUST00000203376 Gm44430 TEC Interval_97601 chr2 140306185 140307429 + 0 NA intron (ENSMUSG00000074764.11, intron 2 of 19) protein_coding-intron (ENSMUSG00000074764.11, intron 2 of 3) -9979 ENSMUSG00000074764.11 ENSMUSG00000074764 ENSMUST00000120133 Sel1l2 protein_coding Interval_54572 chr14 70743288 70743493 + 0 NA intron (ENSMUSG00000022100.14, intron 1 of 21) protein_coding-intron (ENSMUSG00000022100.14, intron 1 of 27) -32489 ENSMUSG00000022102.13 ENSMUSG00000022102 ENSMUST00000164691 Dok2 protein_coding Interval_158193 chr8 79696768 79697963 + 0 NA intron (ENSMUSG00000058355.8, intron 9 of 15) protein_coding-intron (ENSMUSG00000058355.8, intron 9 of 17) -8232 ENSMUSG00000098101.1 ENSMUSG00000098101 ENSMUST00000182218 Gm27006 processed_pseudogene Interval_136711 chr6 58330839 58331137 + 0 NA Intergenic Intergenic 29439 ENSMUSG00000091734.2 ENSMUSG00000091734 ENSMUST00000168416 Vmn1r29 protein_coding Interval_16802 chr10 68249571 68249956 + 0 NA intron (ENSMUSG00000019947.10, intron 2 of 9) protein_coding-intron (ENSMUSG00000019947.10, intron 2 of 10) 28977 ENSMUSG00000019947.10 ENSMUSG00000019947 ENSMUST00000218425 Arid5b protein_coding Interval_79324 chr18 30508890 30510043 + 0 NA Intergenic Intergenic -14093 ENSMUSG00000055771.2 ENSMUSG00000055771 ENSMUST00000069529 Gm7936 processed_pseudogene Interval_35731 chr12 28699808 28701518 + 0 NA TTS (ENSMUSG00000020628.16) protein_coding-TTS (ENSMUSG00000020628.16) 21338 ENSMUSG00000098579.1 ENSMUSG00000098579 ENSMUST00000184974 Mir6937 miRNA Interval_56460 chr14 118912210 118912424 + 0 NA TTS (ENSMUSG00000042156.16) protein_coding-TTS (ENSMUSG00000042156.16) -22654 ENSMUSG00000042156.16 ENSMUSG00000042156 ENSMUST00000226919 Dzip1 protein_coding Interval_102211 chr3 19508384 19508587 + 0 NA promoter-TSS (ENSMUSG00000027606.12) protein_coding-promoter-TSS (ENSMUSG00000027606.12) -22762 ENSMUSG00000027606.12 ENSMUSG00000027606 ENSMUST00000165693 Dnajc5b protein_coding Interval_149069 chr7 92855455 92855692 + 0 NA Intergenic Intergenic 18659 ENSMUSG00000030641.10 ENSMUSG00000030641 ENSMUST00000207931 Ddias protein_coding Interval_97265 chr2 132728481 132728717 + 0 NA intron (ENSMUSG00000044991.10, intron 1 of 1) protein_coding-intron (ENSMUSG00000044991.10, intron 2 of 2) 11493 ENSMUSG00000064413.1 ENSMUSG00000064413 ENSMUST00000082479 Gm22245 snRNA Interval_7026 chr1 122606536 122608496 + 0 NA Intergenic Intergenic 54343 ENSMUSG00000089190.1 ENSMUSG00000089190 ENSMUST00000158565 Gm25771 snoRNA Interval_79373 chr18 31393776 31394067 + 0 NA Intergenic Intergenic -3818 ENSMUSG00000095685.1 ENSMUSG00000095685 ENSMUST00000179362 Gm23283 miRNA Interval_38744 chr12 81796680 81796981 + 0 NA Intergenic Intergenic 15472 ENSMUSG00000113303.1 ENSMUSG00000113303 ENSMUST00000221909 4930423D22Rik bidirectional_promoter_lncRNA Interval_104914 chr3 78974341 78974762 + 0 NA Intergenic Intergenic -5371 ENSMUSG00000077487.1 ENSMUSG00000077487 ENSMUST00000104299 Gm23440 snoRNA Interval_107856 chr3 116328919 116330179 + 0 NA intron (ENSMUSG00000033502.15, intron 8 of 14) protein_coding-intron (ENSMUSG00000033502.15, intron 8 of 15) -20554 ENSMUSG00000106005.1 ENSMUSG00000106005 ENSMUST00000196669 Gm29151 antisense Interval_22953 chr11 17930030 17930760 + 0 NA Intergenic Intergenic 23480 ENSMUSG00000016984.7 ENSMUSG00000016984 ENSMUST00000076661 Etaa1 protein_coding Interval_93154 chr2 70689539 70691024 + 0 NA TTS (ENSMUSG00000014959.12) protein_coding-TTS (ENSMUSG00000014959.12) 2468 ENSMUSG00000014959.12 ENSMUSG00000014959 ENSMUST00000136485 Gorasp2 protein_coding Interval_27291 chr11 65494206 65495252 + 0 NA Intergenic Intergenic -128931 ENSMUSG00000085162.7 ENSMUSG00000085162 ENSMUST00000130362 Gm12295 lincRNA Interval_152729 chr7 136953393 136954255 + 0 NA intron (ENSMUSG00000054612.4, intron 2 of 4) protein_coding-intron (ENSMUSG00000054612.4, intron 2 of 4) 32883 ENSMUSG00000109721.1 ENSMUSG00000109721 ENSMUST00000210484 Gm45280 TEC Interval_70822 chr17 15107211 15109208 + 0 NA Intergenic Intergenic -43950 ENSMUSG00000116655.1 ENSMUSG00000116655 ENSMUST00000231330 Gm35455 lincRNA Interval_66850 chr16 38120322 38121123 + 0 NA intron (ENSMUSG00000022812.14, intron 1 of 11) protein_coding-intron (ENSMUSG00000022812.14, intron 1 of 10) -37286 ENSMUSG00000095395.2 ENSMUSG00000095395 ENSMUST00000179548 Gm25617 snoRNA Interval_94977 chr2 102413000 102414195 + 0 NA Intergenic Intergenic -13340 ENSMUSG00000027189.16 ENSMUSG00000027189 ENSMUST00000144110 Trim44 protein_coding Interval_64548 chr16 13222583 13222975 + 0 NA Intergenic Intergenic 90388 ENSMUSG00000022545.13 ENSMUSG00000022545 ENSMUST00000156393 Ercc4 protein_coding Interval_162688 chr9 7821572 7822561 + 0 NA intron (ENSMUSG00000057367.12, intron 4 of 7) protein_coding-intron (ENSMUSG00000057367.12, intron 3 of 6) 14739 ENSMUSG00000057367.12 ENSMUSG00000057367 ENSMUST00000054878 Birc2 protein_coding Interval_72124 chr17 28172864 28173385 + 0 NA TTS (ENSMUSG00000038677.14) protein_coding-TTS (ENSMUSG00000038677.14) -4334 ENSMUSG00000024220.14 ENSMUSG00000024220 ENSMUST00000151595 Zfp523 protein_coding Interval_170790 chr9 110781070 110782154 + 0 NA Intergenic Intergenic -16554 ENSMUSG00000044664.7 ENSMUSG00000044664 ENSMUST00000035715 Prss42 protein_coding Interval_54694 chr14 73397236 73397501 + 0 NA Intergenic Intergenic -28244 ENSMUSG00000022108.8 ENSMUSG00000022108 ENSMUST00000228637 Itm2b protein_coding Interval_100736 chr2 172226946 172228058 + 0 NA Intergenic Intergenic -20990 ENSMUSG00000038537.1 ENSMUSG00000038537 ENSMUST00000038532 Mc3r protein_coding Interval_61494 chr15 81975307 81975809 + 0 NA Intergenic Intergenic 3168 ENSMUSG00000061848.5 ENSMUSG00000061848 ENSMUST00000072779 Gm5805 processed_pseudogene Interval_107401 chr3 107318586 107319069 + 0 NA Intergenic Intergenic 14274 ENSMUSG00000048109.10 ENSMUSG00000048109 ENSMUST00000197769 Rbm15 protein_coding Interval_24975 chr11 42294435 42294970 + 0 NA Intergenic Intergenic 26349 ENSMUSG00000020428.13 ENSMUSG00000020428 ENSMUST00000109286 Gabra6 protein_coding Interval_98386 chr2 151997909 151998714 + 0 NA intron (ENSMUSG00000027463.14, intron 1 of 3) protein_coding-intron (ENSMUSG00000027463.14, intron 1 of 4) -1554 ENSMUSG00000027463.14 ENSMUSG00000027463 ENSMUST00000109858 Slc52a3 protein_coding Interval_75405 chr17 66389098 66389330 + 0 NA intron (ENSMUSG00000052105.17, intron 3 of 15) protein_coding-intron (ENSMUSG00000052105.17, intron 3 of 13) 24770 ENSMUSG00000093686.1 ENSMUSG00000093686 ENSMUST00000177415 Gm4705 processed_pseudogene Interval_32653 chr11 109439100 109441405 + 0 NA promoter-TSS (ENSMUSG00000020610.17) protein_coding-promoter-TSS (ENSMUSG00000020610.17) -2107 ENSMUSG00000085326.1 ENSMUSG00000085326 ENSMUST00000148057 Gm15642 antisense Interval_104496 chr3 66848138 66848694 + 0 NA Intergenic Intergenic -33934 ENSMUSG00000103700.1 ENSMUSG00000103700 ENSMUST00000195167 Gm6555 processed_pseudogene Interval_44201 chr13 41930939 41931157 + 0 NA Intergenic Intergenic 29397 ENSMUSG00000089035.1 ENSMUSG00000089035 ENSMUST00000158410 Gm22157 snRNA Interval_147858 chr7 74360848 74361197 + 0 NA intron (ENSMUSG00000025790.14, intron 1 of 1) protein_coding-intron (ENSMUSG00000025790.14, intron 2 of 9) -13791 ENSMUSG00000025790.14 ENSMUSG00000025790 ENSMUST00000129292 Slco3a1 protein_coding Interval_48594 chr13 100568368 100568971 + 0 NA Intergenic Intergenic -8637 ENSMUSG00000114332.1 ENSMUSG00000114332 ENSMUST00000223825 Gm8847 processed_pseudogene Interval_169210 chr9 95533764 95534055 + 0 NA Intergenic Intergenic 21758 ENSMUSG00000101037.1 ENSMUSG00000101037 ENSMUST00000187393 Gm28424 antisense Interval_49732 chr13 114331321 114332331 + 0 NA intron (ENSMUSG00000021764.8, intron 1 of 3) protein_coding-intron (ENSMUSG00000021764.8, intron 2 of 4) -47445 ENSMUSG00000114707.1 ENSMUSG00000114707 ENSMUST00000224003 Gm47558 TEC Interval_88740 chr2 10104091 10104641 + 0 NA intron (ENSMUSG00000037254.18, intron 14 of 20) protein_coding-intron (ENSMUSG00000037254.18, intron 14 of 20) 14069 ENSMUSG00000037262.7 ENSMUSG00000037262 ENSMUST00000142773 Kin protein_coding Interval_69245 chr16 91635565 91636782 + 0 NA intron (ENSMUSG00000022962.15, intron 9 of 21) protein_coding-intron (ENSMUSG00000022962.15, intron 9 of 21) -13156 ENSMUSG00000022962.15 ENSMUSG00000022962 ENSMUST00000231775 Gart protein_coding Interval_94474 chr2 91480264 91481564 + 0 NA TTS (ENSMUSG00000027253.15) protein_coding-TTS (ENSMUSG00000027253.15) 4595 ENSMUSG00000027253.15 ENSMUSG00000027253 ENSMUST00000151907 Lrp4 protein_coding Interval_143247 chr7 4727508 4727783 + 0 NA Intergenic Intergenic -2396 ENSMUSG00000046456.14 ENSMUSG00000046456 ENSMUST00000086363 Tmem150b protein_coding Interval_155318 chr8 31213935 31214502 + 0 NA TTS (ENSMUSG00000083588.1) processed_pseudogene-TTS (ENSMUSG00000083588.1) 1133 ENSMUSG00000083588.1 ENSMUSG00000083588 ENSMUST00000120464 Gm8051 processed_pseudogene Interval_128911 chr5 116030220 116031573 + 0 NA Intergenic Intergenic 1417 ENSMUSG00000090728.1 ENSMUSG00000090728 ENSMUST00000164753 Gm17420 pseudogene Interval_123073 chr5 29412914 29413485 + 0 NA Intergenic Intergenic -28119 ENSMUSG00000001569.10 ENSMUSG00000001569 ENSMUST00000146347 Nom1 protein_coding Interval_71978 chr17 27404971 27405512 + 0 NA Intergenic Intergenic 7094 ENSMUSG00000116970.1 ENSMUSG00000116970 ENSMUST00000232032 Gm49796 lincRNA Interval_166971 chr9 64233065 64234175 + 0 NA intron (ENSMUSG00000004936.8, intron 1 of 10) protein_coding-intron (ENSMUSG00000004936.8, intron 1 of 10) -1581 ENSMUSG00000035337.3 ENSMUSG00000035337 ENSMUST00000039011 Uchl4 protein_coding Interval_125053 chr5 64128599 64129641 + 0 NA TTS (ENSMUSG00000029171.12) protein_coding-TTS (ENSMUSG00000029171.12) -15128 ENSMUSG00000087954.1 ENSMUSG00000087954 ENSMUST00000157329 Gm22559 snoRNA Interval_44733 chr13 48015419 48016555 + 0 NA intron (ENSMUSG00000047324.5, intron 2 of 7) lincRNA-intron (ENSMUSG00000047324.5, intron 2 of 7) 2621 ENSMUSG00000047324.5 ENSMUSG00000047324 ENSMUST00000061899 4931429P17Rik lincRNA Interval_134434 chr6 28622892 28623159 + 0 NA intron (ENSMUSG00000001424.14, intron 1 of 4) protein_coding-intron (ENSMUSG00000001424.14, intron 10 of 23) 54953 ENSMUSG00000103132.1 ENSMUSG00000103132 ENSMUST00000194736 Gm37978 TEC Interval_166857 chr9 63286260 63286595 + 0 NA exon (ENSMUSG00000058444.8, exon 12 of 22) protein_coding-exon (ENSMUSG00000058444.8, exon 12 of 22) 91450 ENSMUSG00000058444.8 ENSMUSG00000058444 ENSMUST00000216999 Map2k5 protein_coding Interval_163204 chr9 18097975 18098242 + 0 NA TTS (ENSMUSG00000105805.1) miRNA-TTS (ENSMUSG00000105805.1) 153 ENSMUSG00000111743.1 ENSMUSG00000111743 ENSMUST00000215459 Gm48856 unprocessed_pseudogene Interval_88189 chr19 60513145 60514107 + 0 NA Intergenic Intergenic 23923 ENSMUSG00000033417.16 ENSMUSG00000033417 ENSMUST00000237682 Cacul1 protein_coding Interval_139792 chr6 108728000 108728436 + 0 NA Intergenic Intergenic 65172 ENSMUSG00000030103.11 ENSMUSG00000030103 ENSMUST00000204550 Bhlhe40 protein_coding Interval_20078 chr10 113502930 113503376 + 0 NA Intergenic Intergenic -34870 ENSMUSG00000112750.1 ENSMUSG00000112750 ENSMUST00000219362 Gm47534 processed_pseudogene Interval_76483 chr17 80505580 80506555 + 0 NA Intergenic Intergenic -25614 ENSMUSG00000024241.7 ENSMUSG00000024241 ENSMUST00000234841 Sos1 protein_coding Interval_48001 chr13 95017744 95018375 + 0 NA exon (ENSMUSG00000042015.17, exon 1 of 2) protein_coding-exon (ENSMUSG00000042015.17, exon 1 of 2) 475 ENSMUSG00000042015.17 ENSMUSG00000042015 ENSMUST00000223422 Wdr41 protein_coding Interval_170206 chr9 106194002 106194281 + 0 NA TTS (ENSMUSG00000020253.15) protein_coding-TTS (ENSMUSG00000020253.15) 3657 ENSMUSG00000020253.15 ENSMUSG00000020253 ENSMUST00000152359 Ppm1m protein_coding Interval_170260 chr9 106511701 106512455 + 0 NA intron (ENSMUSG00000118396.2, intron 3 of 4) protein_coding-intron (ENSMUSG00000118396.2, intron 3 of 4) -2495 ENSMUSG00000066382.4 ENSMUSG00000066382 ENSMUST00000085113 Iqcf5 protein_coding Interval_206 KQ030491.1 16677 16872 + 0 NA NA NA NA NA Interval_170317 chr9 106885976 106887501 + 0 NA TTS (ENSMUSG00000032575.16) protein_coding-TTS (ENSMUSG00000032575.16) -1119 ENSMUSG00000074102.4 ENSMUSG00000074102 ENSMUST00000185707 Rbm15b protein_coding Interval_118017 chr4 128152619 128152927 + 0 NA intron (ENSMUSG00000087459.8, intron 2 of 4) protein_coding-intron (ENSMUSG00000028804.20, intron 3 of 12) 14194 ENSMUSG00000087459.8 ENSMUSG00000087459 ENSMUST00000179945 Csmd2os antisense Interval_165596 chr9 50102584 50103202 + 0 NA Intergenic Intergenic 84152 ENSMUSG00000098012.1 ENSMUSG00000098012 ENSMUST00000182240 Gm8907 processed_pseudogene Interval_132470 chr5 145147848 145148374 + 0 NA TTS (ENSMUSG00000038722.17) protein_coding-TTS (ENSMUSG00000038722.17) 7749 ENSMUSG00000038722.17 ENSMUSG00000038722 ENSMUST00000160840 Bud31 protein_coding Interval_28042 chr11 72427051 72427668 + 0 NA Intergenic Intergenic -8175 ENSMUSG00000040471.17 ENSMUSG00000040471 ENSMUST00000100903 Ggt6 protein_coding Interval_92025 chr2 52667220 52667511 + 0 NA intron (ENSMUSG00000017412.15, intron 2 of 13) protein_coding-intron (ENSMUSG00000017412.15, intron 2 of 13) 9217 ENSMUSG00000017412.15 ENSMUSG00000017412 ENSMUST00000148837 Cacnb4 protein_coding Interval_102156 chr3 18827336 18827547 + 0 NA Intergenic Intergenic 74364 ENSMUSG00000103264.1 ENSMUSG00000103264 ENSMUST00000194363 Gm30341 processed_pseudogene Interval_129551 chr5 120865321 120865909 + 0 NA intron (ENSMUSG00000001168.16, intron 2 of 3) protein_coding-intron (ENSMUSG00000001168.16, intron 2 of 5) 4177 ENSMUSG00000001168.16 ENSMUSG00000001168 ENSMUST00000171820 Oas1h protein_coding Interval_67993 chr16 62826304 62826932 + 0 NA exon (ENSMUSG00000022911.11, exon 3 of 3) protein_coding-exon (ENSMUSG00000022911.11, exon 3 of 3) 11942 ENSMUSG00000047854.5 ENSMUSG00000047854 ENSMUST00000055557 Stx19 protein_coding Interval_22181 chr11 6875342 6875573 + 0 NA Intergenic Intergenic -13153 ENSMUSG00000082333.1 ENSMUSG00000082333 ENSMUST00000118142 Gm11984 processed_pseudogene Interval_148145 chr7 79480630 79481584 + 0 NA Intergenic Intergenic 14698 ENSMUSG00000108599.1 ENSMUSG00000108599 ENSMUST00000205285 Gm10616 TEC Interval_83059 chr18 80937919 80938590 + 0 NA Intergenic Intergenic -12449 ENSMUSG00000092973.1 ENSMUSG00000092973 ENSMUST00000175232 Gm25071 miRNA Interval_54118 chr14 65480229 65480861 + 0 NA Intergenic Intergenic -55385 ENSMUSG00000045731.6 ENSMUSG00000045731 ENSMUST00000224594 Pnoc protein_coding Interval_23527 chr11 23136466 23136950 + 0 NA Intergenic Intergenic -15432 ENSMUSG00000086366.1 ENSMUSG00000086366 ENSMUST00000141678 1700061J23Rik lincRNA Interval_70577 chr17 12106357 12106640 + 0 NA Intergenic Intergenic -12831 ENSMUSG00000023827.8 ENSMUSG00000023827 ENSMUST00000167905 Agpat4 protein_coding Interval_52544 chr14 47395798 47396698 + 0 NA promoter-TSS (ENSMUSG00000037544.14) protein_coding-promoter-TSS (ENSMUSG00000037544.14) 10135 ENSMUSG00000037544.14 ENSMUSG00000037544 ENSMUST00000179392 Dlgap5 protein_coding Interval_129305 chr5 118808786 118809868 + 0 NA Intergenic Intergenic 58940 ENSMUSG00000018076.12 ENSMUSG00000018076 ENSMUST00000202787 Med13l protein_coding Interval_60470 chr15 74075696 74076581 + 0 NA Intergenic Intergenic 5373 ENSMUSG00000075609.3 ENSMUSG00000075609 ENSMUST00000100555 Gm7935 processed_pseudogene Interval_18388 chr10 85479926 85480857 + 0 NA intron (ENSMUSG00000020042.15, intron 1 of 16) protein_coding-intron (ENSMUSG00000020042.15, intron 1 of 9) 146490 ENSMUSG00000087895.1 ENSMUSG00000087895 ENSMUST00000157270 Gm25281 miRNA Interval_10990 chr1 177795873 177796884 + 0 NA exon (ENSMUSG00000015961.8, exon 1 of 13) protein_coding-exon (ENSMUSG00000015961.8, exon 1 of 13) 123 ENSMUSG00000015961.8 ENSMUSG00000015961 ENSMUST00000161808 Adss protein_coding Interval_170874 chr9 111449949 111450164 + 0 NA intron (ENSMUSG00000032500.10, intron 1 of 4) protein_coding-intron (ENSMUSG00000032500.10, intron 1 of 4) 10975 ENSMUSG00000032500.10 ENSMUSG00000032500 ENSMUST00000111879 Dclk3 protein_coding Interval_76462 chr17 80372834 80374177 + 0 NA promoter-TSS (ENSMUSG00000066938.1) protein_coding-promoter-TSS (ENSMUSG00000066938.1) 36 ENSMUSG00000066938.1 ENSMUSG00000066938 ENSMUST00000086549 Gm10190 protein_coding Interval_13006 chr10 9165991 9166291 + 0 NA Intergenic Intergenic 58610 ENSMUSG00000112543.1 ENSMUSG00000112543 ENSMUST00000218588 Gm48744 TEC Interval_118 GL456239.1 34233 34522 + 0 NA NA NA NA NA Interval_103895 chr3 54692188 54693358 + 0 NA promoter-TSS (ENSMUSG00000027751.13) protein_coding-promoter-TSS (ENSMUSG00000027751.13) -85 ENSMUSG00000027751.13 ENSMUSG00000027751 ENSMUST00000198745 Supt20 protein_coding Interval_131270 chr5 136089175 136089399 + 0 NA intron (ENSMUSG00000004952.13, intron 3 of 4) protein_coding-intron (ENSMUSG00000004952.13, intron 1 of 20) -1815 ENSMUSG00000004952.13 ENSMUSG00000004952 ENSMUST00000130598 Rasa4 protein_coding Interval_45021 chr13 51553239 51554604 + 0 NA intron (ENSMUSG00000021448.8, intron 1 of 11) protein_coding-intron (ENSMUSG00000021448.8, intron 1 of 11) 15566 ENSMUSG00000021448.8 ENSMUSG00000021448 ENSMUST00000221850 Shc3 protein_coding Interval_141685 chr6 133402581 133402767 + 0 NA Intergenic Intergenic -21655 ENSMUSG00000107527.1 ENSMUSG00000107527 ENSMUST00000204228 Gm44239 unprocessed_pseudogene Interval_131448 chr5 137293211 137295224 + 0 NA promoter-TSS (ENSMUSG00000051502.7) protein_coding-promoter-TSS (ENSMUSG00000051502.7) 437 ENSMUSG00000099145.1 ENSMUSG00000099145 ENSMUST00000184134 Mir8116 miRNA Interval_31563 chr11 101394994 101395653 + 0 NA Intergenic Intergenic 2445 ENSMUSG00000064759.1 ENSMUSG00000064759 ENSMUST00000082825 Gm25475 snRNA Interval_137496 chr6 72760256 72760733 + 0 NA intron (ENSMUSG00000055799.13, intron 2 of 5) protein_coding-intron (ENSMUSG00000055799.13, intron 3 of 11) -8580 ENSMUSG00000104501.1 ENSMUSG00000104501 ENSMUST00000193564 Gm37736 TEC Interval_75075 chr17 63007740 63009098 + 0 NA Intergenic Intergenic 88581 ENSMUSG00000089586.1 ENSMUSG00000089586 ENSMUST00000158961 Gm25348 rRNA Interval_85393 chr19 25454418 25455146 + 0 NA promoter-TSS (ENSMUSG00000064843.1) snRNA-promoter-TSS (ENSMUSG00000064843.1) -719 ENSMUSG00000064843.1 ENSMUSG00000064843 ENSMUST00000082909 Gm26207 snRNA Interval_62952 chr15 98131808 98132577 + 0 NA exon (ENSMUSG00000033065.14, exon 23 of 23) protein_coding-exon (ENSMUSG00000033065.14, exon 23 of 23) 33433 ENSMUSG00000048175.13 ENSMUSG00000048175 ENSMUST00000123922 Asb8 protein_coding Interval_80421 chr18 42054857 42055865 + 0 NA intron (ENSMUSG00000057719.11, intron 1 of 7) protein_coding-intron (ENSMUSG00000057719.11, intron 1 of 8) -56312 ENSMUSG00000073574.4 ENSMUSG00000073574 ENSMUST00000097591 Grxcr2 protein_coding Interval_140907 chr6 122698620 122698806 + 0 NA exon (ENSMUSG00000080932.3, exon 1 of 1) processed_pseudogene-exon (ENSMUSG00000080932.3, exon 1 of 1) 315 ENSMUSG00000080932.3 ENSMUSG00000080932 ENSMUST00000119496 Gm10224 processed_pseudogene Interval_165850 chr9 53806015 53807303 + 0 NA exon (ENSMUSG00000042195.9, exon 4 of 8) protein_coding-exon (ENSMUSG00000042195.9, exon 4 of 8) -4058 ENSMUSG00000042195.9 ENSMUSG00000042195 ENSMUST00000216515 Slc35f2 protein_coding Interval_140339 chr6 116681824 116682775 + 0 NA exon (ENSMUSG00000048108.13, exon 5 of 5) protein_coding-exon (ENSMUSG00000048108.13, exon 5 of 5) -8501 ENSMUSG00000042129.8 ENSMUSG00000042129 ENSMUST00000204576 Rassf4 protein_coding Interval_162245 chr8 126404332 126404650 + 0 NA Intergenic Intergenic -18037 ENSMUSG00000051671.7 ENSMUSG00000051671 ENSMUST00000211868 Coa6 protein_coding Interval_143777 chr7 16245865 16246318 + 0 NA TTS (ENSMUSG00000049130.6) protein_coding-TTS (ENSMUSG00000049130.6) -3760 ENSMUSG00000074361.11 ENSMUSG00000074361 ENSMUST00000171425 C5ar2 protein_coding Interval_87704 chr19 55226351 55227667 + 0 NA intron (ENSMUSG00000055523.7, intron 8 of 20) protein_coding-intron (ENSMUSG00000055523.7, intron 8 of 20) 14227 ENSMUSG00000055523.7 ENSMUSG00000055523 ENSMUST00000069183 Gucy2g protein_coding Interval_63626 chr15 102423440 102423887 + 0 NA intron (ENSMUSG00000001280.13, intron 3 of 5) protein_coding-intron (ENSMUSG00000001280.13, intron 3 of 5) 17520 ENSMUSG00000001280.13 ENSMUSG00000001280 ENSMUST00000168802 Sp1 protein_coding Interval_163238 chr9 19084950 19085233 + 0 NA Intergenic Intergenic -35504 ENSMUSG00000059303.6 ENSMUSG00000059303 ENSMUST00000074986 Olfr836 protein_coding Interval_93348 chr2 72196013 72197294 + 0 NA TTS (ENSMUSG00000049044.16) protein_coding-TTS (ENSMUSG00000049044.16) -2146 ENSMUSG00000049044.16 ENSMUSG00000049044 ENSMUST00000146970 Rapgef4 protein_coding Interval_85019 chr19 21591615 21592789 + 0 NA intron (ENSMUSG00000035171.9, intron 1 of 2) protein_coding-intron (ENSMUSG00000035171.9, intron 1 of 2) 39998 ENSMUSG00000079382.3 ENSMUSG00000079382 ENSMUST00000112772 Gm3443 transcribed_unitary_pseudogene Interval_80049 chr18 36960216 36960946 + 0 NA exon (ENSMUSG00000103092.1, exon 1 of 4) protein_coding-exon (ENSMUSG00000103092.1, exon 1 of 4) 141 ENSMUSG00000103092.1 ENSMUSG00000103092 ENSMUST00000192168 Pcdha5 protein_coding Interval_87407 chr19 49186683 49186877 + 0 NA Intergenic Intergenic 96107 ENSMUSG00000118111.1 ENSMUSG00000118111 ENSMUST00000236912 Gm50442 lincRNA Interval_135029 chr6 34796534 34796919 + 0 NA intron (ENSMUSG00000038836.15, intron 6 of 19) protein_coding-intron (ENSMUSG00000038836.15, intron 6 of 19) 10047 ENSMUSG00000082920.1 ENSMUSG00000082920 ENSMUST00000119745 Gm13864 processed_pseudogene Interval_169948 chr9 103140184 103140834 + 0 NA intron (ENSMUSG00000032549.7, intron 2 of 7) protein_coding-intron (ENSMUSG00000032549.7, intron 2 of 7) 20141 ENSMUSG00000102461.1 ENSMUSG00000102461 ENSMUST00000195473 Gm37166 TEC Interval_125554 chr5 70761193 70761547 + 0 NA intron (ENSMUSG00000001260.10, intron 8 of 8) protein_coding-intron (ENSMUSG00000001260.10, intron 8 of 8) 80944 ENSMUSG00000001260.10 ENSMUSG00000001260 ENSMUST00000200126 Gabrg1 protein_coding Interval_131624 chr5 138888560 138889425 + 0 NA Intergenic Intergenic 68912 ENSMUSG00000094504.3 ENSMUSG00000094504 ENSMUST00000179205 Gm5294 protein_coding Interval_48404 chr13 98827319 98827617 + 0 NA Intergenic Intergenic 10716 ENSMUSG00000114719.1 ENSMUSG00000114719 ENSMUST00000225468 Gm18134 processed_pseudogene Interval_68089 chr16 64923622 64923791 + 0 NA Intergenic Intergenic -4622 ENSMUSG00000116811.1 ENSMUSG00000116811 ENSMUST00000232275 Gm16385 processed_pseudogene Interval_34636 chr12 8246761 8247181 + 0 NA intron (ENSMUSG00000037669.15, intron 3 of 4) protein_coding-intron (ENSMUSG00000037669.15, intron 4 of 6) -37806 ENSMUSG00000112694.1 ENSMUSG00000112694 ENSMUST00000217927 Gm33037 antisense Interval_30856 chr11 96902689 96903147 + 0 NA Intergenic Intergenic 13189 ENSMUSG00000018669.14 ENSMUSG00000018669 ENSMUST00000130767 Cdk5rap3 protein_coding Interval_43956 chr13 38402784 38402985 + 0 NA intron (ENSMUSG00000039004.6, intron 1 of 3) protein_coding-intron (ENSMUSG00000039004.6, intron 1 of 6) 56731 ENSMUSG00000039004.6 ENSMUSG00000039004 ENSMUST00000223628 Bmp6 protein_coding Interval_108981 chr3 133869561 133870038 + 0 NA intron (ENSMUSG00000097911.2, intron 1 of 2) antisense-intron (ENSMUSG00000097911.2, intron 1 of 2) -51281 ENSMUSG00000104645.1 ENSMUSG00000104645 ENSMUST00000200327 Gm30484 lincRNA Interval_55206 chr14 79320898 79321655 + 0 NA Intergenic Intergenic -19631 ENSMUSG00000022018.7 ENSMUSG00000022018 ENSMUST00000022595 Rgcc protein_coding Interval_92572 chr2 60801251 60802780 + 0 NA intron (ENSMUSG00000026970.16, intron 2 of 14) protein_coding-intron (ENSMUSG00000026970.16, intron 2 of 13) 79423 ENSMUSG00000026970.16 ENSMUSG00000026970 ENSMUST00000128866 Rbms1 protein_coding Interval_52286 chr14 43924932 43925814 + 0 NA promoter-TSS (ENSMUSG00000089901.1) protein_coding-promoter-TSS (ENSMUSG00000089901.1) -17 ENSMUSG00000089901.1 ENSMUSG00000089901 ENSMUST00000160298 Gm8113 protein_coding Interval_2343 chr1 38202738 38203064 + 0 NA intron (ENSMUSG00000037138.18, intron 16 of 22) protein_coding-intron (ENSMUSG00000037138.18, intron 16 of 22) -36799 ENSMUSG00000085391.1 ENSMUSG00000085391 ENSMUST00000133299 Gm16150 antisense Interval_56695 chr14 121435842 121436246 + 0 NA Intergenic Intergenic 19718 ENSMUSG00000115123.1 ENSMUSG00000115123 ENSMUST00000227451 Gm33299 lincRNA Interval_140358 chr6 117173842 117174314 + 0 NA exon (ENSMUSG00000061353.11, exon 3 of 3) protein_coding-exon (ENSMUSG00000061353.11, exon 3 of 3) 5501 ENSMUSG00000061353.11 ENSMUSG00000061353 ENSMUST00000073043 Cxcl12 protein_coding Interval_48303 chr13 97955466 97956046 + 0 NA intron (ENSMUSG00000021662.11, intron 16 of 27) protein_coding-intron (ENSMUSG00000021662.11, intron 24 of 35) 60661 ENSMUSG00000021662.11 ENSMUSG00000021662 ENSMUST00000224866 Arhgef28 protein_coding Interval_76149 chr17 75580741 75581136 + 0 NA Intergenic Intergenic -29065 ENSMUSG00000002017.10 ENSMUSG00000002017 ENSMUST00000141969 Fam98a protein_coding Interval_85696 chr19 29710817 29711300 + 0 NA Intergenic Intergenic 13124 ENSMUSG00000024806.4 ENSMUSG00000024806 ENSMUST00000235954 Mlana protein_coding Interval_152935 chr7 139905447 139906234 + 0 NA intron (ENSMUSG00000066129.15, intron 3 of 29) protein_coding-intron (ENSMUSG00000066129.15, intron 3 of 30) -17489 ENSMUSG00000109710.1 ENSMUSG00000109710 ENSMUST00000209974 Gm4974 processed_pseudogene Interval_146320 chr7 45326029 45327838 + 0 NA intron (ENSMUSG00000038260.10, intron 3 of 22) protein_coding-intron (ENSMUSG00000038260.10, intron 5 of 24) 1968 ENSMUSG00000046721.11 ENSMUSG00000046721 ENSMUST00000026901 Rpl14-ps1 processed_pseudogene Interval_57697 chr15 15878719 15879380 + 0 NA Intergenic Intergenic 3258 ENSMUSG00000115524.1 ENSMUSG00000115524 ENSMUST00000228560 Gm49122 processed_pseudogene Interval_113883 chr4 59557569 59559631 + 0 NA Intergenic Intergenic -9348 ENSMUSG00000028382.15 ENSMUSG00000028382 ENSMUST00000140925 Ptbp3 protein_coding Interval_108772 chr3 131184299 131184669 + 0 NA intron (ENSMUSG00000027985.14, intron 3 of 8) protein_coding-intron (ENSMUSG00000027985.14, intron 3 of 11) 47699 ENSMUSG00000104612.1 ENSMUSG00000104612 ENSMUST00000200349 Gm42449 TEC Interval_169111 chr9 92596925 92598011 + 0 NA intron (ENSMUSG00000032374.14, intron 2 of 3) protein_coding-intron (ENSMUSG00000032374.14, intron 11 of 18) -3874 ENSMUSG00000032374.14 ENSMUSG00000032374 ENSMUST00000190075 Plod2 protein_coding Interval_174608 chrX 159987670 159988974 + 0 NA promoter-TSS (ENSMUSG00000031303.8) protein_coding-promoter-TSS (ENSMUSG00000031303.8) -111 ENSMUSG00000031303.8 ENSMUSG00000031303 ENSMUST00000033665 Map3k15 protein_coding Interval_109772 chr3 146812188 146813525 + 0 NA exon (ENSMUSG00000005034.15, exon 1 of 10) protein_coding-exon (ENSMUSG00000005034.15, exon 1 of 10) 9693 ENSMUSG00000104946.1 ENSMUSG00000104946 ENSMUST00000198392 Gm19104 processed_pseudogene Interval_58121 chr15 28080481 28081401 + 0 NA intron (ENSMUSG00000115773.1, intron 1 of 5) lincRNA-intron (ENSMUSG00000115773.1, intron 1 of 5) 37511 ENSMUSG00000115773.1 ENSMUSG00000115773 ENSMUST00000228807 Gm31458 lincRNA Interval_88514 chr2 5760244 5761100 + 0 NA Intergenic Intergenic -46169 ENSMUSG00000039145.16 ENSMUSG00000039145 ENSMUST00000155927 Camk1d protein_coding Interval_143914 chr7 17188569 17188827 + 0 NA Intergenic Intergenic -14779 ENSMUSG00000023159.8 ENSMUSG00000023159 ENSMUST00000075934 Psg29 protein_coding Interval_163935 chr9 29306836 29307755 + 0 NA intron (ENSMUSG00000059974.10, intron 2 of 2) protein_coding-intron (ENSMUSG00000059974.10, intron 2 of 7) 247496 ENSMUSG00000085449.1 ENSMUSG00000085449 ENSMUST00000132097 Gm15520 antisense Interval_60328 chr15 72942550 72943272 + 0 NA intron (ENSMUSG00000047921.17, intron 12 of 16) protein_coding-intron (ENSMUSG00000047921.17, intron 12 of 21) 29554 ENSMUSG00000096173.2 ENSMUSG00000096173 ENSMUST00000166418 Gm3150 processed_pseudogene Interval_47309 chr13 81025413 81025777 + 0 NA intron (ENSMUSG00000097098.8, intron 1 of 1) antisense-intron (ENSMUSG00000097098.8, intron 1 of 1) 4306 ENSMUSG00000114822.1 ENSMUSG00000114822 ENSMUST00000225928 Gm4813 processed_pseudogene Interval_137393 chr6 71877942 71879194 + 0 NA Intergenic Intergenic 4125 ENSMUSG00000080465.1 ENSMUSG00000080465 ENSMUST00000116815 Gm22486 snoRNA Interval_3058 chr1 52757926 52759281 + 0 NA Intergenic Intergenic 1884 ENSMUSG00000100230.1 ENSMUSG00000100230 ENSMUST00000188413 Gm28650 processed_pseudogene Interval_89078 chr2 15821152 15821429 + 0 NA intron (ENSMUSG00000075520.5, intron 20 of 38) protein_coding-intron (ENSMUSG00000075520.5, intron 20 of 38) -135635 ENSMUSG00000081245.2 ENSMUSG00000081245 ENSMUST00000120219 Gm6587 processed_pseudogene Interval_144471 chr7 25340966 25341676 + 0 NA intron (ENSMUSG00000045039.9, intron 19 of 40) protein_coding-intron (ENSMUSG00000045039.9, intron 19 of 40) -4660 ENSMUSG00000045039.9 ENSMUSG00000045039 ENSMUST00000153077 Megf8 protein_coding Interval_138358 chr6 87581243 87581994 + 0 NA exon (ENSMUSG00000049409.9, exon 3 of 3) protein_coding-exon (ENSMUSG00000049409.9, exon 3 of 3) 9125 ENSMUSG00000049409.9 ENSMUSG00000049409 ENSMUST00000203636 Prokr1 protein_coding Interval_169299 chr9 96239011 96240174 + 0 NA intron (ENSMUSG00000032411.15, intron 4 of 13) protein_coding-intron (ENSMUSG00000032411.15, intron 3 of 12) 20462 ENSMUSG00000103611.1 ENSMUSG00000103611 ENSMUST00000192006 Gm37195 TEC Interval_130435 chr5 127612658 127612994 + 0 NA intron (ENSMUSG00000029416.17, intron 1 of 1) protein_coding-intron (ENSMUSG00000029416.17, intron 1 of 7) -4166 ENSMUSG00000105362.1 ENSMUSG00000105362 ENSMUST00000196415 Gm43474 TEC Interval_26319 chr11 56131138 56132065 + 0 NA Intergenic Intergenic -90591 ENSMUSG00000037393.2 ENSMUSG00000037393 ENSMUST00000037682 Nmur2 protein_coding Interval_81467 chr18 60941310 60942947 + 0 NA exon (ENSMUSG00000024617.16, exon 2 of 2) protein_coding-exon (ENSMUSG00000024617.16, exon 2 of 2) -11745 ENSMUSG00000098247.1 ENSMUSG00000098247 ENSMUST00000183978 Mir7220 miRNA Interval_100950 chr2 173585420 173587116 + 0 NA TTS (ENSMUSG00000055897.13) transcribed_unprocessed_pseudogene-TTS (ENSMUSG00000055897.13) 5045 ENSMUSG00000055897.13 ENSMUSG00000055897 ENSMUST00000133185 Ppp4r1l-ps transcribed_unprocessed_pseudogene Interval_3311 chr1 56697148 56697941 + 0 NA Intergenic Intergenic -60109 ENSMUSG00000045336.5 ENSMUSG00000045336 ENSMUST00000062085 Hsfy2 protein_coding Interval_33016 chr11 113694091 113694298 + 0 NA intron (ENSMUSG00000041623.17, intron 4 of 4) protein_coding-intron (ENSMUSG00000041623.17, intron 4 of 4) 9108 ENSMUSG00000041623.17 ENSMUSG00000041623 ENSMUST00000153732 D11Wsu47e protein_coding Interval_162718 chr9 7989011 7989219 + 0 NA intron (ENSMUSG00000053110.13, intron 1 of 7) protein_coding-intron (ENSMUSG00000053110.13, intron 2 of 8) 12588 ENSMUSG00000053110.13 ENSMUSG00000053110 ENSMUST00000174300 Yap1 protein_coding Interval_97018 chr2 130563263 130564386 + 0 NA promoter-TSS (ENSMUSG00000037740.8) protein_coding-promoter-TSS (ENSMUSG00000037740.8) -75 ENSMUSG00000060029.13 ENSMUSG00000060029 ENSMUST00000079964 4930473A02Rik antisense Interval_127148 chr5 100622833 100623085 + 0 NA Intergenic Intergenic -30203 ENSMUSG00000104993.1 ENSMUSG00000104993 ENSMUST00000197922 Gm43510 processed_pseudogene Interval_149067 chr7 92846912 92847093 + 0 NA Intergenic Intergenic 27230 ENSMUSG00000030641.10 ENSMUSG00000030641 ENSMUST00000207931 Ddias protein_coding Interval_2863 chr1 46913824 46914692 + 0 NA Intergenic Intergenic -17379 ENSMUSG00000100160.1 ENSMUSG00000100160 ENSMUST00000185210 Gm28527 processed_pseudogene Interval_167747 chr9 72481957 72482173 + 0 NA intron (ENSMUSG00000090626.9, intron 4 of 6) protein_coding-intron (ENSMUSG00000090626.9, intron 5 of 10) 9874 ENSMUSG00000090626.9 ENSMUSG00000090626 ENSMUST00000184624 Tex9 protein_coding Interval_77029 chr17 85799217 85801280 + 0 NA intron (ENSMUSG00000100345.1, intron 2 of 4) lincRNA-intron (ENSMUSG00000100345.1, intron 2 of 4) 23796 ENSMUSG00000100345.1 ENSMUSG00000100345 ENSMUST00000186162 Gm29418 lincRNA Interval_152132 chr7 129823499 129824007 + 0 NA Intergenic Intergenic -9293 ENSMUSG00000108576.1 ENSMUSG00000108576 ENSMUST00000206447 Gm44778 lincRNA Interval_160895 chr8 114750843 114752071 + 0 NA intron (ENSMUSG00000004637.15, intron 8 of 8) protein_coding-intron (ENSMUSG00000004637.15, intron 8 of 8) 39290 ENSMUSG00000004637.15 ENSMUSG00000004637 ENSMUST00000162052 Wwox protein_coding Interval_57489 chr15 11741268 11742509 + 0 NA Intergenic Intergenic -38185 ENSMUSG00000115585.1 ENSMUSG00000115585 ENSMUST00000228108 Gm41271 processed_transcript Interval_1753 chr1 33542188 33543029 + 0 NA intron (ENSMUSG00000026134.11, intron 7 of 13) protein_coding-intron (ENSMUSG00000026134.11, intron 7 of 13) 60507 ENSMUSG00000101682.1 ENSMUSG00000101682 ENSMUST00000185489 Gm29228 processed_pseudogene Interval_33392 chr11 116306290 116308337 + 0 NA promoter-TSS (ENSMUSG00000020792.15) protein_coding-promoter-TSS (ENSMUSG00000020792.15) -15843 ENSMUSG00000020792.15 ENSMUSG00000020792 ENSMUST00000124281 Exoc7 protein_coding Interval_108166 chr3 122103949 122104888 + 0 NA intron (ENSMUSG00000028125.14, intron 13 of 49) protein_coding-intron (ENSMUSG00000028125.14, intron 13 of 49) 48201 ENSMUSG00000105351.1 ENSMUSG00000105351 ENSMUST00000198223 Gm43157 processed_pseudogene Interval_16784 chr10 68142509 68143048 + 0 NA intron (ENSMUSG00000019947.10, intron 4 of 10) protein_coding-intron (ENSMUSG00000019947.10, intron 4 of 10) -116152 ENSMUSG00000086838.1 ENSMUSG00000086838 ENSMUST00000143555 Gm16212 antisense Interval_11466 chr1 182043075 182043314 + 0 NA Intergenic Intergenic -28209 ENSMUSG00000103379.1 ENSMUSG00000103379 ENSMUST00000193768 Gm37177 processed_pseudogene Interval_95955 chr2 118667558 118667802 + 0 NA intron (ENSMUSG00000074923.10, intron 2 of 2) protein_coding-intron (ENSMUSG00000074923.10, intron 2 of 10) 3918 ENSMUSG00000074923.10 ENSMUSG00000074923 ENSMUST00000132577 Pak6 protein_coding Interval_25064 chr11 43601201 43601533 + 0 NA intron (ENSMUSG00000020405.4, intron 1 of 3) protein_coding-intron (ENSMUSG00000020405.4, intron 1 of 3) 173 ENSMUSG00000020405.4 ENSMUSG00000020405 ENSMUST00000020672 Fabp6 protein_coding Interval_31090 chr11 98072470 98072940 + 0 NA Intergenic Intergenic 8817 ENSMUSG00000084079.1 ENSMUSG00000084079 ENSMUST00000119220 Gm11631 processed_pseudogene Interval_76243 chr17 78386768 78388310 + 0 NA intron (ENSMUSG00000056121.16, intron 5 of 9) protein_coding-intron (ENSMUSG00000056121.16, intron 5 of 7) 14996 ENSMUSG00000056121.16 ENSMUSG00000056121 ENSMUST00000234900 Fez2 protein_coding Interval_158792 chr8 86608737 86609101 + 0 NA Intergenic Intergenic 21957 ENSMUSG00000106513.1 ENSMUSG00000106513 ENSMUST00000200165 Gm44348 miRNA Interval_27573 chr11 68789566 68791502 + 0 NA TTS (ENSMUSG00000020900.15) protein_coding-TTS (ENSMUSG00000020900.15) 69462 ENSMUSG00000018736.14 ENSMUSG00000018736 ENSMUST00000127469 Ndel1 protein_coding Interval_55291 chr14 80492044 80492881 + 0 NA Intergenic Intergenic 50057 ENSMUSG00000115036.1 ENSMUSG00000115036 ENSMUST00000227575 Gm49043 processed_pseudogene Interval_55593 chr14 94558810 94558977 + 0 NA Intergenic Intergenic -50099 ENSMUSG00000115638.1 ENSMUSG00000115638 ENSMUST00000227114 Gm18074 processed_pseudogene Interval_89893 chr2 26281073 26281373 + 0 NA exon (ENSMUSG00000048038.8, exon 5 of 10) protein_coding-exon (ENSMUSG00000048038.8, exon 5 of 10) 13215 ENSMUSG00000048038.8 ENSMUSG00000048038 ENSMUST00000057224 Ccdc187 protein_coding Interval_19356 chr10 97692866 97694506 + 0 NA exon (ENSMUSG00000047025.5, exon 1 of 1) protein_coding-exon (ENSMUSG00000047025.5, exon 1 of 1) 627 ENSMUSG00000047025.5 ENSMUSG00000047025 ENSMUST00000060703 Ccer1 protein_coding Interval_39976 chr12 100199001 100200907 + 0 NA promoter-TSS (ENSMUSG00000001175.16) protein_coding-promoter-TSS (ENSMUSG00000001175.16) 425 ENSMUSG00000001175.16 ENSMUSG00000001175 ENSMUST00000127300 Calm1 protein_coding Interval_81751 chr18 64387733 64388502 + 0 NA exon (ENSMUSG00000045991.19, exon 2 of 2) protein_coding-exon (ENSMUSG00000045991.19, exon 2 of 2) 40552 ENSMUSG00000118375.1 ENSMUSG00000118375 ENSMUST00000237830 Gm36804 processed_pseudogene Interval_106118 chr3 93377624 93378918 + 0 NA intron (ENSMUSG00000102476.1, intron 3 of 3) lincRNA-intron (ENSMUSG00000102476.1, intron 3 of 3) -10418 ENSMUSG00000106242.1 ENSMUSG00000106242 ENSMUST00000200618 Gm44353 miRNA Interval_174620 chrX 160170125 160170535 + 0 NA Intergenic Intergenic -41365 ENSMUSG00000031299.10 ENSMUSG00000031299 ENSMUST00000127535 Pdha1 protein_coding Interval_62597 chr15 95186206 95186531 + 0 NA TTS (ENSMUSG00000022454.17) protein_coding-TTS (ENSMUSG00000022454.17) -23974 ENSMUSG00000100603.6 ENSMUSG00000100603 ENSMUST00000185302 1700129L04Rik sense_intronic Interval_99075 chr2 157020373 157021665 + 0 NA exon (ENSMUSG00000055485.6, exon 14 of 15) protein_coding-exon (ENSMUSG00000055485.6, exon 14 of 15) 6453 ENSMUSG00000055485.6 ENSMUSG00000055485 ENSMUST00000133571 Soga1 protein_coding Interval_98933 chr2 156104222 156104485 + 0 NA intron (ENSMUSG00000098950.7, intron 3 of 6) protein_coding-intron (ENSMUSG00000074643.12, intron 1 of 5) 7573 ENSMUSG00000098950.7 ENSMUSG00000098950 ENSMUST00000183518 Gm28036 protein_coding Interval_79464 chr18 32102352 32102710 + 0 NA exon (ENSMUSG00000024384.4, exon 14 of 14) protein_coding-exon (ENSMUSG00000024384.4, exon 14 of 14) 9776 ENSMUSG00000117481.1 ENSMUSG00000117481 ENSMUST00000235012 Gm49966 processed_pseudogene Interval_45276 chr13 53825722 53826529 + 0 NA Intergenic Intergenic 49498 ENSMUSG00000114143.1 ENSMUSG00000114143 ENSMUST00000221931 Gm48548 lincRNA Interval_168661 chr9 85625125 85627078 + 0 NA Intergenic Intergenic 13466 ENSMUSG00000111386.1 ENSMUSG00000111386 ENSMUST00000213802 Gm48842 lincRNA Interval_95826 chr2 116972339 116972876 + 0 NA TTS (ENSMUSG00000099470.1) lincRNA-TTS (ENSMUSG00000099470.1) 3821 ENSMUSG00000099470.1 ENSMUSG00000099470 ENSMUST00000188763 Gm29340 lincRNA Interval_117861 chr4 126706787 126706974 + 0 NA intron (ENSMUSG00000028837.8, intron 4 of 4) protein_coding-intron (ENSMUSG00000028837.8, intron 4 of 5) 29176 ENSMUSG00000028837.8 ENSMUSG00000028837 ENSMUST00000150372 Psmb2 protein_coding Interval_121959 chr5 12566089 12567047 + 0 NA intron (ENSMUSG00000040254.11, intron 13 of 16) protein_coding-intron (ENSMUSG00000040254.11, intron 13 of 17) 11936 ENSMUSG00000104632.1 ENSMUSG00000104632 ENSMUST00000196982 Gm42909 TEC Interval_79485 chr18 32267379 32268410 + 0 NA intron (ENSMUSG00000024382.13, intron 13 of 13) protein_coding-intron (ENSMUSG00000024382.13, intron 14 of 14) -25456 ENSMUSG00000089529.1 ENSMUSG00000089529 ENSMUST00000158904 Gm22325 misc_RNA Interval_18295 chr10 84665883 84667184 + 0 NA intron (ENSMUSG00000034453.8, intron 6 of 6) protein_coding-intron (ENSMUSG00000034453.8, intron 12 of 27) 28399 ENSMUSG00000034453.8 ENSMUSG00000034453 ENSMUST00000213543 Polr3b protein_coding Interval_145949 chr7 42578844 42579458 + 0 NA promoter-TSS (ENSMUSG00000094462.1) protein_coding-promoter-TSS (ENSMUSG00000094462.1) -563 ENSMUSG00000094462.1 ENSMUSG00000094462 ENSMUST00000179470 Gm21028 protein_coding Interval_46806 chr13 70899879 70900103 + 0 NA Intergenic Intergenic 17043 ENSMUSG00000021600.5 ENSMUSG00000021600 ENSMUST00000225672 8030423J24Rik lincRNA Interval_21589 chr10 130348941 130349209 + 0 NA TTS (ENSMUSG00000034833.10) protein_coding-TTS (ENSMUSG00000034833.10) 20331 ENSMUSG00000034833.10 ENSMUSG00000034833 ENSMUST00000220164 Tespa1 protein_coding Interval_115019 chr4 88543842 88544476 + 0 NA Intergenic Intergenic 14086 ENSMUSG00000096011.1 ENSMUSG00000096011 ENSMUST00000102809 Ifna15 protein_coding Interval_9634 chr1 160520245 160521167 + 0 NA intron (ENSMUSG00000026721.16, intron 13 of 20) protein_coding-intron (ENSMUSG00000026721.16, intron 13 of 20) 53104 ENSMUSG00000104026.1 ENSMUSG00000104026 ENSMUST00000192582 Gm37212 TEC Interval_68460 chr16 77155088 77155589 + 0 NA Intergenic Intergenic 141632 ENSMUSG00000022867.11 ENSMUSG00000022867 ENSMUST00000232351 Usp25 protein_coding Interval_168884 chr9 88356206 88356538 + 0 NA intron (ENSMUSG00000032420.8, intron 3 of 5) protein_coding-intron (ENSMUSG00000032420.8, intron 3 of 8) 685 ENSMUSG00000032420.8 ENSMUSG00000032420 ENSMUST00000217134 Nt5e protein_coding Interval_104180 chr3 59870423 59871008 + 0 NA intron (ENSMUSG00000095522.2, intron 4 of 4) protein_coding-intron (ENSMUSG00000095522.2, intron 4 of 4) 9664 ENSMUSG00000095522.2 ENSMUSG00000095522 ENSMUST00000179799 Aadacl2fm3 protein_coding Interval_20114 chr10 114957987 114958253 + 0 NA Intergenic Intergenic 10189 ENSMUSG00000112016.1 ENSMUSG00000112016 ENSMUST00000218941 Gm31267 lincRNA Interval_103457 chr3 41690126 41691023 + 0 NA intron (ENSMUSG00000059834.12, intron 4 of 6) protein_coding-intron (ENSMUSG00000059834.12, intron 9 of 20) -41324 ENSMUSG00000102436.1 ENSMUSG00000102436 ENSMUST00000193690 Gm38047 TEC Interval_89552 chr2 22676635 22677480 + 0 NA intron (ENSMUSG00000026787.3, intron 12 of 15) protein_coding-intron (ENSMUSG00000026787.3, intron 12 of 15) 10399 ENSMUSG00000092811.1 ENSMUSG00000092811 ENSMUST00000175070 Gm23636 miRNA Interval_2980 chr1 51851771 51852795 + 0 NA intron (ENSMUSG00000018417.14, intron 3 of 6) protein_coding-intron (ENSMUSG00000018417.14, intron 3 of 30) -3165 ENSMUSG00000101724.1 ENSMUSG00000101724 ENSMUST00000186428 Gm29453 sense_intronic Interval_168026 chr9 75462968 75464949 + 0 NA intron (ENSMUSG00000042487.6, intron 9 of 9) protein_coding-intron (ENSMUSG00000042487.6, intron 11 of 11) -18893 ENSMUSG00000109032.1 ENSMUSG00000109032 ENSMUST00000209180 Gm7972 transcribed_unprocessed_pseudogene Interval_25932 chr11 52719403 52719958 + 0 NA Intergenic Intergenic -44954 ENSMUSG00000036264.9 ENSMUSG00000036264 ENSMUST00000036796 Fstl4 protein_coding Interval_162658 chr9 7560261 7560722 + 0 NA exon (ENSMUSG00000005800.3, exon 2 of 10) protein_coding-exon (ENSMUSG00000005800.3, exon 2 of 10) 2035 ENSMUSG00000005800.3 ENSMUSG00000005800 ENSMUST00000018765 Mmp8 protein_coding Interval_12304 chr1 191545611 191546147 + 0 NA intron (ENSMUSG00000037474.13, intron 13 of 14) protein_coding-intron (ENSMUSG00000037474.13, intron 13 of 14) -8987 ENSMUSG00000102246.1 ENSMUSG00000102246 ENSMUST00000192556 9430037O13Rik TEC Interval_94054 chr2 82915213 82916262 + 0 NA Intergenic Intergenic -27897 ENSMUSG00000075249.12 ENSMUSG00000075249 ENSMUST00000132967 Fsip2 protein_coding Interval_112867 chr4 45643849 45644314 + 0 NA intron (ENSMUSG00000085980.2, intron 3 of 3) lincRNA-intron (ENSMUSG00000085980.2, intron 3 of 3) 4337 ENSMUSG00000085980.2 ENSMUSG00000085980 ENSMUST00000211200 Gm12408 lincRNA Interval_38974 chr12 84210383 84211816 + 0 NA intron (ENSMUSG00000042507.15, intron 1 of 12) protein_coding-intron (ENSMUSG00000042507.15, intron 1 of 12) 5038 ENSMUSG00000113094.1 ENSMUSG00000113094 ENSMUST00000220851 Gm47447 sense_intronic Interval_91186 chr2 35735183 35735448 + 0 NA Intergenic Intergenic 24988 ENSMUSG00000026883.17 ENSMUSG00000026883 ENSMUST00000156669 Dab2ip protein_coding Interval_6785 chr1 119463473 119464419 + 0 NA Intergenic Intergenic -35531 ENSMUSG00000101437.1 ENSMUSG00000101437 ENSMUST00000190805 Gm29454 processed_pseudogene Interval_77545 chr17 91332795 91333081 + 0 NA Intergenic Intergenic 14634 ENSMUSG00000117471.1 ENSMUSG00000117471 ENSMUST00000233999 Gm49988 processed_pseudogene Interval_72641 chr17 31266919 31267324 + 0 NA intron (ENSMUSG00000024033.10, intron 3 of 8) protein_coding-intron (ENSMUSG00000024033.10, intron 3 of 8) 9840 ENSMUSG00000024033.10 ENSMUSG00000024033 ENSMUST00000235144 Rsph1 protein_coding Interval_95981 chr2 118916317 118917023 + 0 NA TTS (ENSMUSG00000040007.8) protein_coding-TTS (ENSMUSG00000040007.8) -9844 ENSMUSG00000074916.5 ENSMUSG00000074916 ENSMUST00000110837 Chst14 protein_coding Interval_65050 chr16 18712046 18712280 + 0 NA Intergenic Intergenic -29947 ENSMUSG00000116825.1 ENSMUSG00000116825 ENSMUST00000231787 Rps2-ps7 processed_pseudogene Interval_158950 chr8 88184668 88185040 + 0 NA Intergenic Intergenic 10294 ENSMUSG00000062704.3 ENSMUSG00000062704 ENSMUST00000185395 9430002A10Rik lincRNA Interval_23842 chr11 27056719 27056967 + 0 NA Intergenic Intergenic 5146 ENSMUSG00000083895.1 ENSMUSG00000083895 ENSMUST00000120189 Gm12074 processed_pseudogene Interval_50560 chr14 15411276 15411503 + 0 NA intron (ENSMUSG00000045201.6, intron 1 of 1) protein_coding-intron (ENSMUSG00000045201.6, intron 1 of 1) 26757 ENSMUSG00000045201.6 ENSMUSG00000045201 ENSMUST00000223700 Lrrc3b protein_coding Interval_12196 chr1 190780003 190780274 + 0 NA intron (ENSMUSG00000089872.10, intron 5 of 5) protein_coding-intron (ENSMUSG00000089872.10, intron 14 of 14) 119579 ENSMUSG00000089872.10 ENSMUSG00000089872 ENSMUST00000159066 Rps6kc1 protein_coding Interval_152963 chr7 140082233 140082679 + 0 NA promoter-TSS (ENSMUSG00000025468.15) protein_coding-promoter-TSS (ENSMUSG00000025468.15) 56 ENSMUSG00000025468.15 ENSMUSG00000025468 ENSMUST00000211681 Caly protein_coding Interval_165178 chr9 45030836 45031375 + 0 NA Intergenic Intergenic -8694 ENSMUSG00000032092.5 ENSMUSG00000032092 ENSMUST00000216777 Mpzl2 protein_coding Interval_147842 chr7 74090894 74091243 + 0 NA Intergenic Intergenic -47330 ENSMUSG00000108725.1 ENSMUSG00000108725 ENSMUST00000205302 Gm45004 lincRNA Interval_22235 chr11 7439498 7440489 + 0 NA Intergenic Intergenic -149619 ENSMUSG00000087637.1 ENSMUSG00000087637 ENSMUST00000149481 Gm11986 lincRNA Interval_116368 chr4 110351074 110352186 + 0 NA intron (ENSMUSG00000028546.17, intron 1 of 5) protein_coding-intron (ENSMUSG00000028546.17, intron 1 of 5) -64103 ENSMUSG00000028546.17 ENSMUSG00000028546 ENSMUST00000142722 Elavl4 protein_coding Interval_5807 chr1 92049988 92050810 + 0 NA intron (ENSMUSG00000026313.16, intron 4 of 4) protein_coding-intron (ENSMUSG00000026313.16, intron 2 of 25) -28302 ENSMUSG00000102565.1 ENSMUSG00000102565 ENSMUST00000192836 Gm37036 TEC Interval_139921 chr6 112745010 112745336 + 0 NA intron (ENSMUSG00000030257.16, intron 5 of 7) protein_coding-intron (ENSMUSG00000030257.16, intron 14 of 21) -48540 ENSMUSG00000030254.16 ENSMUSG00000030254 ENSMUST00000135092 Rad18 protein_coding Interval_84439 chr19 10923184 10923591 + 0 NA Intergenic Intergenic -7089 ENSMUSG00000024734.8 ENSMUSG00000024734 ENSMUST00000025641 Zp1 protein_coding Interval_165224 chr9 45471616 45472325 + 0 NA intron (ENSMUSG00000032087.11, intron 3 of 32) protein_coding-intron (ENSMUSG00000032087.11, intron 3 of 32) -40240 ENSMUSG00000097074.2 ENSMUSG00000097074 ENSMUST00000215652 4833428L15Rik antisense Interval_2260 chr1 37469146 37469726 + 0 NA intron (ENSMUSG00000026110.15, intron 4 of 14) protein_coding-intron (ENSMUSG00000026110.15, intron 4 of 14) 19169 ENSMUSG00000103948.1 ENSMUSG00000103948 ENSMUST00000192316 4930594C11Rik TEC Interval_73260 chr17 35836193 35838694 + 0 NA promoter-TSS (ENSMUSG00000001525.10) protein_coding-promoter-TSS (ENSMUSG00000001525.10) -383 ENSMUSG00000001525.10 ENSMUSG00000001525 ENSMUST00000156050 Tubb5 protein_coding Interval_114028 chr4 62619286 62619865 + 0 NA promoter-TSS (ENSMUSG00000059810.18) protein_coding-promoter-TSS (ENSMUSG00000059810.18) -4134 ENSMUSG00000059810.18 ENSMUSG00000059810 ENSMUST00000153875 Rgs3 protein_coding Interval_152804 chr7 137884826 137885774 + 0 NA Intergenic Intergenic 151034 ENSMUSG00000110090.1 ENSMUSG00000110090 ENSMUST00000209434 Gm45682 lincRNA Interval_138226 chr6 86457149 86458183 + 0 NA intron (ENSMUSG00000046679.16, intron 7 of 10) protein_coding-intron (ENSMUSG00000046679.16, intron 6 of 9) 19277 ENSMUSG00000046679.16 ENSMUSG00000046679 ENSMUST00000148768 C87436 protein_coding Interval_122464 chr5 23152517 23153726 + 0 NA intron (ENSMUSG00000106379.1, intron 2 of 2) protein_coding-intron (ENSMUSG00000106379.1, intron 2 of 2) 70675 ENSMUSG00000104866.1 ENSMUSG00000104866 ENSMUST00000199085 Gm42948 antisense Interval_155137 chr8 26966606 26966986 + 0 NA exon (ENSMUSG00000110345.1, exon 1 of 3) lincRNA-exon (ENSMUSG00000110345.1, exon 1 of 3) 362 ENSMUSG00000110345.1 ENSMUSG00000110345 ENSMUST00000211774 Gm45572 lincRNA Interval_166097 chr9 56585494 56585895 + 0 NA Intergenic Intergenic -20999 ENSMUSG00000097870.2 ENSMUSG00000097870 ENSMUST00000181927 Gm26868 lincRNA Interval_27316 chr11 66122025 66122985 + 0 NA intron (ENSMUSG00000056752.16, intron 10 of 10) protein_coding-intron (ENSMUSG00000056752.16, intron 10 of 68) -45530 ENSMUSG00000084967.1 ENSMUSG00000084967 ENSMUST00000144922 Gm12296 processed_transcript Interval_82576 chr18 75248588 75250433 + 0 NA intron (ENSMUSG00000035765.10, intron 16 of 16) protein_coding-intron (ENSMUSG00000035765.10, intron 16 of 16) 47807 ENSMUSG00000102047.1 ENSMUSG00000102047 ENSMUST00000186356 2010010A06Rik transcribed_processed_pseudogene Interval_69744 chr16 95983594 95984187 + 0 NA exon (ENSMUSG00000022913.16, exon 5 of 7) protein_coding-exon (ENSMUSG00000022913.16, exon 5 of 7) 7000 ENSMUSG00000022913.16 ENSMUSG00000022913 ENSMUST00000233134 Psmg1 protein_coding Interval_14838 chr10 40390593 40390809 + 0 NA intron (ENSMUSG00000038481.13, intron 1 of 11) protein_coding-intron (ENSMUSG00000038481.13, intron 1 of 12) -40598 ENSMUSG00000038491.9 ENSMUSG00000038491 ENSMUST00000044774 Cdk19os antisense Interval_119641 chr4 138921296 138922847 + 0 NA Intergenic Intergenic -8126 ENSMUSG00000041161.8 ENSMUSG00000041161 ENSMUST00000097830 Otud3 protein_coding Interval_36010 chr12 33269635 33269996 + 0 NA intron (ENSMUSG00000020564.17, intron 3 of 12) protein_coding-intron (ENSMUSG00000020564.17, intron 3 of 11) -40961 ENSMUSG00000079143.3 ENSMUSG00000079143 ENSMUST00000155877 Atxn7l1os1 antisense Interval_100987 chr2 173936756 173937020 + 0 NA Intergenic Intergenic -16062 ENSMUSG00000082543.1 ENSMUSG00000082543 ENSMUST00000117491 Gm14336 processed_pseudogene Interval_110912 chr4 10072113 10073280 + 0 NA Intergenic Intergenic 113342 ENSMUSG00000082501.1 ENSMUSG00000082501 ENSMUST00000120635 Gm11835 processed_pseudogene Interval_73889 chr17 45259659 45259874 + 0 NA Intergenic Intergenic 49800 ENSMUSG00000096425.1 ENSMUSG00000096425 ENSMUST00000178626 Gm24979 miRNA Interval_78503 chr18 13755062 13757190 + 0 NA intron (ENSMUSG00000024420.9, intron 2 of 5) protein_coding-intron (ENSMUSG00000024420.9, intron 5 of 7) 120200 ENSMUSG00000024420.9 ENSMUSG00000024420 ENSMUST00000234025 Zfp521 protein_coding Interval_34663 chr12 8479246 8479572 + 0 NA exon (ENSMUSG00000112657.1, exon 1 of 1) transcribed_processed_pseudogene-exon (ENSMUSG00000112657.1, exon 1 of 1) 1178 ENSMUSG00000112657.1 ENSMUSG00000112657 ENSMUST00000219344 BC106175 transcribed_processed_pseudogene Interval_112001 chr4 33137518 33138493 + 0 NA intron (ENSMUSG00000028280.9, intron 1 of 9) protein_coding-intron (ENSMUSG00000028280.9, intron 1 of 9) 5484 ENSMUSG00000028280.9 ENSMUSG00000028280 ENSMUST00000029947 Gabrr1 protein_coding Interval_109689 chr3 146008045 146009009 + 0 NA intron (ENSMUSG00000036863.12, intron 4 of 6) protein_coding-intron (ENSMUSG00000036863.12, intron 4 of 6) 20390 ENSMUSG00000036863.12 ENSMUSG00000036863 ENSMUST00000195918 Syde2 protein_coding Interval_45445 chr13 55205258 55206103 + 0 NA Intergenic Intergenic -6390 ENSMUSG00000021488.8 ENSMUSG00000021488 ENSMUST00000225405 Nsd1 protein_coding Interval_82685 chr18 75923132 75923596 + 0 NA intron (ENSMUSG00000044646.15, intron 2 of 5) protein_coding-intron (ENSMUSG00000044646.15, intron 2 of 4) 92313 ENSMUSG00000118311.1 ENSMUSG00000118311 ENSMUST00000238127 1700003O11Rik antisense Interval_135531 chr6 40048700 40049733 + 0 NA intron (ENSMUSG00000057716.7, intron 2 of 3) protein_coding-intron (ENSMUSG00000057716.7, intron 2 of 3) 22322 ENSMUSG00000103331.1 ENSMUSG00000103331 ENSMUST00000194958 Gm37995 TEC Interval_6777 chr1 119419600 119419844 + 0 NA intron (ENSMUSG00000037035.5, intron 1 of 1) protein_coding-intron (ENSMUSG00000037035.5, intron 1 of 1) 2526 ENSMUSG00000037035.5 ENSMUSG00000037035 ENSMUST00000038765 Inhbb protein_coding Interval_141917 chr6 135351636 135352680 + 0 NA Intergenic Intergenic -2409 ENSMUSG00000082691.6 ENSMUSG00000082691 ENSMUST00000117045 Dynlt1-ps1 processed_pseudogene Interval_54839 chr14 75745502 75745717 + 0 NA TTS (ENSMUSG00000089405.1) rRNA-TTS (ENSMUSG00000089405.1) 331 ENSMUSG00000089405.1 ENSMUSG00000089405 ENSMUST00000158780 Gm24876 rRNA Interval_53167 chr14 54863544 54864607 + 0 NA promoter-TSS (ENSMUSG00000057156.10) protein_coding-promoter-TSS (ENSMUSG00000057156.10) -6879 ENSMUSG00000057156.10 ENSMUSG00000057156 ENSMUST00000146642 Homez protein_coding Interval_32945 chr11 113296316 113296607 + 0 NA intron (ENSMUSG00000041654.15, intron 7 of 9) protein_coding-intron (ENSMUSG00000041654.15, intron 8 of 10) -86792 ENSMUSG00000085421.1 ENSMUSG00000085421 ENSMUST00000130373 4732490B19Rik lincRNA Interval_146165 chr7 44461385 44462989 + 0 NA TTS (ENSMUSG00000047085.14) protein_coding-TTS (ENSMUSG00000047085.14) -5131 ENSMUSG00000038704.12 ENSMUSG00000038704 ENSMUST00000207591 Aspdh protein_coding Interval_20883 chr10 121726480 121728012 + 0 NA Intergenic Intergenic -22211 ENSMUSG00000112526.1 ENSMUSG00000112526 ENSMUST00000220180 Gm35865 lincRNA Interval_87299 chr19 47460229 47460839 + 0 NA intron (ENSMUSG00000053617.12, intron 1 of 13) protein_coding-intron (ENSMUSG00000053617.12, intron 1 of 14) -50175 ENSMUSG00000053617.12 ENSMUSG00000053617 ENSMUST00000237828 Sh3pxd2a protein_coding Interval_5216 chr1 86497814 86498483 + 0 NA Intergenic Intergenic 24489 ENSMUSG00000101328.1 ENSMUSG00000101328 ENSMUST00000163337 Rpl30-ps6 processed_pseudogene Interval_52828 chr14 50913648 50914634 + 0 NA exon (ENSMUSG00000006289.14, exon 11 of 11) protein_coding-exon (ENSMUSG00000006289.14, exon 11 of 11) 3233 ENSMUSG00000006289.14 ENSMUSG00000006289 ENSMUST00000160464 Osgep protein_coding Interval_10274 chr1 167854778 167855009 + 0 NA Intergenic Intergenic -149246 ENSMUSG00000093538.2 ENSMUSG00000093538 ENSMUST00000177351 Gm20711 antisense Interval_25039 chr11 43445967 43446810 + 0 NA exon (ENSMUSG00000020409.10, exon 16 of 16) protein_coding-exon (ENSMUSG00000020409.10, exon 16 of 16) 9045 ENSMUSG00000020409.10 ENSMUSG00000020409 ENSMUST00000136541 Slu7 protein_coding Interval_47787 chr13 92743306 92743638 + 0 NA Intergenic Intergenic 24110 ENSMUSG00000114631.1 ENSMUSG00000114631 ENSMUST00000223855 Gm5199 processed_pseudogene Interval_83103 chr18 81355337 81355677 + 0 NA Intergenic Intergenic 90816 ENSMUSG00000117717.1 ENSMUSG00000117717 ENSMUST00000236674 Gm30192 lincRNA Interval_21975 chr11 5502368 5502885 + 0 NA exon (ENSMUSG00000085189.1, exon 2 of 3) antisense-exon (ENSMUSG00000085189.1, exon 2 of 3) 3786 ENSMUSG00000085189.1 ENSMUSG00000085189 ENSMUST00000149826 Gm11963 antisense Interval_137443 chr6 72487148 72487889 + 0 NA Intergenic Intergenic 32518 ENSMUSG00000052631.15 ENSMUSG00000052631 ENSMUST00000159577 Sh2d6 protein_coding Interval_47708 chr13 91543552 91544297 + 0 NA intron (ENSMUSG00000003992.15, intron 3 of 10) protein_coding-intron (ENSMUSG00000003992.15, intron 3 of 16) 82754 ENSMUSG00000003992.15 ENSMUSG00000003992 ENSMUST00000137658 Ssbp2 protein_coding Interval_47424 chr13 83918013 83918587 + 0 NA intron (ENSMUSG00000100891.1, intron 2 of 2) lincRNA-intron (ENSMUSG00000100891.1, intron 2 of 2) 27092 ENSMUSG00000100891.1 ENSMUSG00000100891 ENSMUST00000185600 2810049E08Rik lincRNA Interval_79263 chr18 28504433 28505724 + 0 NA Intergenic Intergenic 29292 ENSMUSG00000117348.1 ENSMUSG00000117348 ENSMUST00000234341 Gm34658 processed_pseudogene Interval_64774 chr16 15626886 15627117 + 0 NA intron (ENSMUSG00000022673.5, intron 13 of 15) protein_coding-intron (ENSMUSG00000022673.5, intron 13 of 15) 9257 ENSMUSG00000022673.5 ENSMUSG00000022673 ENSMUST00000230437 Mcm4 protein_coding Interval_90072 chr2 27729641 27730238 + 0 NA intron (ENSMUSG00000015846.15, intron 1 of 9) protein_coding-intron (ENSMUSG00000015846.15, intron 1 of 9) 4720 ENSMUSG00000015846.15 ENSMUSG00000015846 ENSMUST00000148756 Rxra protein_coding Interval_7685 chr1 133039246 133040298 + 0 NA Intergenic Intergenic 13971 ENSMUSG00000100228.1 ENSMUSG00000100228 ENSMUST00000186115 Gm29257 processed_pseudogene Interval_15318 chr10 44468477 44469191 + 0 NA intron (ENSMUSG00000038151.13, intron 1 of 3) protein_coding-intron (ENSMUSG00000038151.13, intron 1 of 3) -11624 ENSMUSG00000038151.13 ENSMUSG00000038151 ENSMUST00000167340 Prdm1 protein_coding Interval_3694 chr1 60920556 60921675 + 0 NA Intergenic Intergenic 20217 ENSMUSG00000081382.1 ENSMUSG00000081382 ENSMUST00000121555 Rpl18-ps1 processed_pseudogene Interval_162440 chr8 128745785 128746730 + 0 NA intron (ENSMUSG00000025808.17, intron 8 of 10) protein_coding-intron (ENSMUSG00000102141.1, intron 6 of 6) 21924 ENSMUSG00000025809.15 ENSMUSG00000025809 ENSMUST00000149116 Itgb1 protein_coding Interval_87227 chr19 47047278 47047841 + 0 NA intron (ENSMUSG00000025050.8, intron 5 of 6) protein_coding-intron (ENSMUSG00000025050.8, intron 5 of 9) 3331 ENSMUSG00000025050.8 ENSMUSG00000025050 ENSMUST00000236339 Pcgf6 protein_coding Interval_124264 chr5 43149319 43149612 + 0 NA Intergenic Intergenic -1138 ENSMUSG00000105087.1 ENSMUSG00000105087 ENSMUST00000196754 Gm42552 TEC Interval_94645 chr2 92972957 92974342 + 0 NA exon (ENSMUSG00000075028.12, exon 7 of 7) protein_coding-exon (ENSMUSG00000075028.12, exon 7 of 7) -56795 ENSMUSG00000075027.10 ENSMUSG00000075027 ENSMUST00000145926 4631405J19Rik antisense Interval_48442 chr13 99049609 99050582 + 0 NA Intergenic Intergenic -9445 ENSMUSG00000089488.1 ENSMUSG00000089488 ENSMUST00000158863 Gm24733 misc_RNA Interval_92924 chr2 68698230 68698872 + 0 NA intron (ENSMUSG00000079324.11, intron 13 of 28) protein_coding-intron (ENSMUSG00000079324.11, intron 12 of 27) -17740 ENSMUSG00000079324.11 ENSMUSG00000079324 ENSMUST00000135023 4932414N04Rik protein_coding Interval_33780 chr11 118460427 118460675 + 0 NA Intergenic Intergenic -5556 ENSMUSG00000086514.1 ENSMUSG00000086514 ENSMUST00000142751 Gm11747 antisense Interval_133254 chr5 150890225 150890531 + 0 NA Intergenic Intergenic -7736 ENSMUSG00000107047.1 ENSMUSG00000107047 ENSMUST00000200887 Gm43298 lincRNA Interval_66922 chr16 38548211 38550560 + 0 NA exon (ENSMUSG00000034064.14, exon 2 of 11) protein_coding-exon (ENSMUSG00000034064.14, exon 2 of 11) 837 ENSMUSG00000034064.14 ENSMUSG00000034064 ENSMUST00000137762 Poglut1 protein_coding Interval_145541 chr7 35490072 35490322 + 0 NA intron (ENSMUSG00000030491.16, intron 12 of 25) protein_coding-intron (ENSMUSG00000030491.16, intron 12 of 25) 9520 ENSMUSG00000100068.1 ENSMUSG00000100068 ENSMUST00000186253 Gm18558 processed_pseudogene Interval_111424 chr4 21536123 21536420 + 0 NA Intergenic Intergenic -90109 ENSMUSG00000083654.1 ENSMUSG00000083654 ENSMUST00000118187 Gm11875 processed_pseudogene Interval_113954 chr4 61792461 61792990 + 0 NA intron (ENSMUSG00000081207.4, intron 2 of 5) processed_transcript-intron (ENSMUSG00000081207.4, intron 2 of 5) -4757 ENSMUSG00000090090.1 ENSMUSG00000090090 ENSMUST00000120085 Mup-ps16 unprocessed_pseudogene Interval_29986 chr11 88548940 88550380 + 0 NA intron (ENSMUSG00000069769.13, intron 1 of 5) protein_coding-intron (ENSMUSG00000069769.13, intron 6 of 13) 40487 ENSMUSG00000069769.13 ENSMUSG00000069769 ENSMUST00000126293 Msi2 protein_coding Interval_95966 chr2 118745233 118746873 + 0 NA exon (ENSMUSG00000074918.4, exon 1 of 1) protein_coding-exon (ENSMUSG00000074918.4, exon 1 of 1) 295 ENSMUSG00000074918.4 ENSMUSG00000074918 ENSMUST00000149978 Inafm2 protein_coding Interval_148629 chr7 83584658 83585176 + 0 NA promoter-TSS (ENSMUSG00000038540.14) protein_coding-promoter-TSS (ENSMUSG00000038540.14) -12610 ENSMUSG00000038540.14 ENSMUSG00000038540 ENSMUST00000171397 Tmc3 protein_coding Interval_65527 chr16 23090117 23090312 + 0 NA Intergenic Intergenic -2729 ENSMUSG00000116625.1 ENSMUSG00000116625 ENSMUST00000231398 Gm8134 processed_pseudogene Interval_72142 chr17 28256935 28257339 + 0 NA intron (ENSMUSG00000002250.16, intron 2 of 6) protein_coding-intron (ENSMUSG00000002250.16, intron 2 of 7) 24363 ENSMUSG00000002250.16 ENSMUSG00000002250 ENSMUST00000233383 Ppard protein_coding Interval_170405 chr9 107709187 107710480 + 0 NA promoter-TSS (ENSMUSG00000034684.12) protein_coding-promoter-TSS (ENSMUSG00000034684.12) -25072 ENSMUSG00000034684.12 ENSMUSG00000034684 ENSMUST00000195023 Sema3f protein_coding Interval_120431 chr4 148579430 148581099 + 0 NA intron (ENSMUSG00000017264.16, intron 3 of 5) protein_coding-intron (ENSMUSG00000017264.16, intron 21 of 24) 4098 ENSMUSG00000017264.16 ENSMUSG00000017264 ENSMUST00000173892 Exosc10 protein_coding Interval_120969 chr4 151986081 151986514 + 0 NA intron (ENSMUSG00000039759.10, intron 1 of 1) protein_coding-intron (ENSMUSG00000039759.10, intron 1 of 3) 2683 ENSMUSG00000039759.10 ENSMUSG00000039759 ENSMUST00000146471 Thap3 protein_coding Interval_220 KV575233.1 208810 209205 + 0 NA NA NA NA NA Interval_122679 chr5 24623977 24625240 + 0 NA promoter-TSS (ENSMUSG00000028949.13) protein_coding-promoter-TSS (ENSMUSG00000028949.13) -1472 ENSMUSG00000028949.13 ENSMUSG00000028949 ENSMUST00000199393 Smarcd3 protein_coding Interval_120074 chr4 141663241 141664867 + 0 NA promoter-TSS (ENSMUSG00000028917.14) protein_coding-promoter-TSS (ENSMUSG00000028917.14) 21545 ENSMUSG00000040715.12 ENSMUSG00000040715 ENSMUST00000105782 Rsc1a1 protein_coding Interval_113346 chr4 53634164 53634806 + 0 NA intron (ENSMUSG00000054752.16, intron 1 of 5) protein_coding-intron (ENSMUSG00000054752.16, intron 1 of 3) -8795 ENSMUSG00000054752.16 ENSMUSG00000054752 ENSMUST00000180164 Fsd1l protein_coding Interval_130907 chr5 133836307 133836794 + 0 NA Intergenic Intergenic 5969 ENSMUSG00000106067.1 ENSMUSG00000106067 ENSMUST00000198842 Gm7902 processed_pseudogene Interval_76294 chr17 78817101 78817319 + 0 NA intron (ENSMUSG00000039414.10, intron 12 of 26) protein_coding-intron (ENSMUSG00000039414.10, intron 12 of 35) -26384 ENSMUSG00000050668.10 ENSMUSG00000050668 ENSMUST00000233913 Gpatch11 protein_coding Interval_27544 chr11 68585934 68587247 + 0 NA promoter-TSS (ENSMUSG00000045915.15) protein_coding-promoter-TSS (ENSMUSG00000045915.15) 367 ENSMUSG00000085937.1 ENSMUSG00000085937 ENSMUST00000148019 Ccdc42os antisense Interval_44575 chr13 46291213 46291513 + 0 NA intron (ENSMUSG00000063529.3, intron 3 of 4) protein_coding-intron (ENSMUSG00000063529.3, intron 3 of 4) 17642 ENSMUSG00000063529.3 ENSMUSG00000063529 ENSMUST00000076622 Stmnd1 protein_coding Interval_130802 chr5 130745924 130746407 + 0 NA intron (ENSMUSG00000060371.12, intron 4 of 5) protein_coding-intron (ENSMUSG00000060371.12, intron 5 of 6) -36536 ENSMUSG00000088972.2 ENSMUSG00000088972 ENSMUST00000158347 Gm23761 snRNA Interval_172783 chrX 48694433 48695506 + 0 NA promoter-TSS (ENSMUSG00000031107.6) protein_coding-promoter-TSS (ENSMUSG00000031107.6) -11211 ENSMUSG00000031107.6 ENSMUSG00000031107 ENSMUST00000139150 Rbmx2 protein_coding Interval_49703 chr13 114096572 114097609 + 0 NA intron (ENSMUSG00000042348.10, intron 5 of 5) protein_coding-intron (ENSMUSG00000042348.10, intron 4 of 4) 23326 ENSMUSG00000114696.1 ENSMUSG00000114696 ENSMUST00000223997 Gm47479 TEC Interval_170023 chr9 103722431 103722987 + 0 NA intron (ENSMUSG00000042757.16, intron 2 of 3) protein_coding-intron (ENSMUSG00000042757.16, intron 2 of 5) 39120 ENSMUSG00000042757.16 ENSMUSG00000042757 ENSMUST00000186455 Tmem108 protein_coding Interval_149584 chr7 99838250 99838557 + 0 NA TTS (ENSMUSG00000035227.7) protein_coding-TTS (ENSMUSG00000035227.7) -9986 ENSMUSG00000035239.6 ENSMUSG00000035239 ENSMUST00000036331 Neu3 protein_coding Interval_84057 chr19 6996040 6996631 + 0 NA promoter-TSS (ENSMUSG00000037349.9) protein_coding-promoter-TSS (ENSMUSG00000037349.9) 204 ENSMUSG00000047656.9 ENSMUSG00000047656 ENSMUST00000088223 Trpt1 protein_coding Interval_71456 chr17 23863187 23863968 + 0 NA Intergenic Intergenic -4930 ENSMUSG00000089697.1 ENSMUSG00000089697 ENSMUST00000161395 Gm15947 antisense Interval_115951 chr4 106560330 106561783 + 0 NA promoter-TSS (ENSMUSG00000034926.3) protein_coding-promoter-TSS (ENSMUSG00000034926.3) 18 ENSMUSG00000034926.3 ENSMUSG00000034926 ENSMUST00000047973 Dhcr24 protein_coding Interval_28930 chr11 79338774 79340712 + 0 NA promoter-TSS (ENSMUSG00000020716.16) protein_coding-promoter-TSS (ENSMUSG00000020716.16) -49 ENSMUSG00000020716.16 ENSMUSG00000020716 ENSMUST00000137997 Nf1 protein_coding Interval_142371 chr6 141089342 141089580 + 0 NA Intergenic Intergenic -48586 ENSMUSG00000107462.1 ENSMUSG00000107462 ENSMUST00000203682 Gm7384 processed_pseudogene Interval_80233 chr18 38431968 38432499 + 0 NA intron (ENSMUSG00000024425.4, intron 1 of 2) protein_coding-intron (ENSMUSG00000024425.4, intron 1 of 7) -18949 ENSMUSG00000117986.1 ENSMUSG00000117986 ENSMUST00000235696 Gm50344 processed_pseudogene Interval_30485 chr11 94662214 94663166 + 0 NA Intergenic Intergenic 8914 ENSMUSG00000024414.13 ENSMUSG00000024414 ENSMUST00000125148 Mrpl27 protein_coding Interval_4675 chr1 76035811 76037013 + 0 NA Intergenic Intergenic -17656 ENSMUSG00000099996.1 ENSMUSG00000099996 ENSMUST00000188786 Gm29065 lincRNA Interval_117733 chr4 125905902 125906554 + 0 NA intron (ENSMUSG00000085562.7, intron 2 of 5) lincRNA-intron (ENSMUSG00000085562.7, intron 2 of 5) 16189 ENSMUSG00000085562.7 ENSMUSG00000085562 ENSMUST00000144539 2610028E06Rik lincRNA Interval_153460 chr7 144939420 144940278 + 0 NA promoter-TSS (ENSMUSG00000070348.5) protein_coding-promoter-TSS (ENSMUSG00000070348.5) 76 ENSMUSG00000070348.5 ENSMUSG00000070348 ENSMUST00000135985 Ccnd1 protein_coding Interval_64143 chr16 8698369 8698709 + 0 NA promoter-TSS (ENSMUSG00000022710.17) protein_coding-promoter-TSS (ENSMUSG00000022710.17) -7 ENSMUSG00000022710.17 ENSMUSG00000022710 ENSMUST00000159509 Usp7 protein_coding Interval_141828 chr6 134764718 134765135 + 0 NA intron (ENSMUSG00000030203.17, intron 1 of 6) protein_coding-intron (ENSMUSG00000030203.17, intron 1 of 6) -3826 ENSMUSG00000030203.17 ENSMUSG00000030203 ENSMUST00000149776 Dusp16 protein_coding Interval_69320 chr16 92178911 92179735 + 0 NA intron (ENSMUSG00000116747.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000116747.1, intron 1 of 2) 10180 ENSMUSG00000116784.1 ENSMUSG00000116784 ENSMUST00000232093 Gm49716 processed_pseudogene Interval_93805 chr2 77037803 77037994 + 0 NA intron (ENSMUSG00000044033.16, intron 3 of 3) protein_coding-intron (ENSMUSG00000044033.16, intron 17 of 22) -15202 ENSMUSG00000044033.16 ENSMUSG00000044033 ENSMUST00000111833 Ccdc141 protein_coding Interval_150212 chr7 108142628 108142861 + 0 NA Intergenic Intergenic -15295 ENSMUSG00000110171.2 ENSMUSG00000110171 ENSMUST00000210881 Olfr484 protein_coding Interval_167027 chr9 64646341 64646640 + 0 NA intron (ENSMUSG00000036466.17, intron 7 of 24) protein_coding-intron (ENSMUSG00000036466.17, intron 7 of 24) 79230 ENSMUSG00000004771.12 ENSMUSG00000004771 ENSMUST00000165083 Rab11a protein_coding Interval_10978 chr1 177725568 177727035 + 0 NA Intergenic Intergenic -3513 ENSMUSG00000015962.5 ENSMUSG00000015962 ENSMUST00000016106 1700016C15Rik protein_coding Interval_66491 chr16 34274506 34275194 + 0 NA intron (ENSMUSG00000061751.16, intron 9 of 48) protein_coding-intron (ENSMUSG00000061751.16, intron 10 of 59) -178822 ENSMUSG00000061751.16 ENSMUSG00000061751 ENSMUST00000132569 Kalrn protein_coding Interval_13767 chr10 21907061 21909316 + 0 NA intron (ENSMUSG00000019970.15, intron 1 of 13) protein_coding-intron (ENSMUSG00000019970.15, intron 1 of 13) -29296 ENSMUSG00000080607.1 ENSMUSG00000080607 ENSMUST00000116957 Gm23839 snoRNA Interval_95979 chr2 118899971 118903094 + 0 NA promoter-TSS (ENSMUSG00000040007.8) protein_coding-promoter-TSS (ENSMUSG00000040007.8) 1155 ENSMUSG00000040007.8 ENSMUSG00000040007 ENSMUST00000036578 Bahd1 protein_coding Interval_165059 chr9 44201796 44202106 + 0 NA intron (ENSMUSG00000034342.9, intron 1 of 15) protein_coding-intron (ENSMUSG00000034342.9, intron 1 of 14) -21250 ENSMUSG00000110972.1 ENSMUSG00000110972 ENSMUST00000214603 5830462O15Rik TEC Interval_122160 chr5 18445884 18446521 + 0 NA Intergenic Intergenic 43992 ENSMUSG00000104718.1 ENSMUSG00000104718 ENSMUST00000199456 Gm31752 lincRNA Interval_72760 chr17 31999189 32000411 + 0 NA intron (ENSMUSG00000002076.12, intron 7 of 8) protein_coding-intron (ENSMUSG00000002076.12, intron 6 of 7) -28138 ENSMUSG00000088406.1 ENSMUSG00000088406 ENSMUST00000157781 Gm25883 misc_RNA Interval_149804 chr7 101669146 101669490 + 0 NA intron (ENSMUSG00000001829.17, intron 2 of 16) protein_coding-intron (ENSMUSG00000001829.17, intron 2 of 15) 5545 ENSMUSG00000001829.17 ENSMUSG00000001829 ENSMUST00000150832 Clpb protein_coding Interval_80840 chr18 48694194 48694448 + 0 NA Intergenic Intergenic 30597 ENSMUSG00000117885.1 ENSMUSG00000117885 ENSMUST00000235212 Gm50229 lincRNA Interval_64391 chr16 11056875 11057671 + 0 NA intron (ENSMUSG00000022500.15, intron 1 of 2) protein_coding-intron (ENSMUSG00000022500.15, intron 1 of 2) -3672 ENSMUSG00000037972.7 ENSMUSG00000037972 ENSMUST00000089011 Snn protein_coding Interval_162739 chr9 8203669 8204210 + 0 NA Intergenic Intergenic -18031 ENSMUSG00000031998.5 ENSMUSG00000031998 ENSMUST00000213708 1700128F08Rik transcribed_processed_pseudogene Interval_156997 chr8 64079594 64080210 + 0 NA intron (ENSMUSG00000053626.5, intron 9 of 20) protein_coding-intron (ENSMUSG00000053626.5, intron 9 of 20) -80275 ENSMUSG00000110305.1 ENSMUSG00000110305 ENSMUST00000210228 Gm45513 processed_pseudogene Interval_68830 chr16 87435413 87435915 + 0 NA intron (ENSMUSG00000041079.12, intron 4 of 4) protein_coding-intron (ENSMUSG00000041079.12, intron 4 of 4) -3101 ENSMUSG00000052299.9 ENSMUSG00000052299 ENSMUST00000232095 Ltn1 protein_coding Interval_147202 chr7 64391629 64393139 + 0 NA promoter-TSS (ENSMUSG00000030521.11) protein_coding-promoter-TSS (ENSMUSG00000030521.11) -356 ENSMUSG00000033429.10 ENSMUSG00000033429 ENSMUST00000206194 Mcee protein_coding Interval_78831 chr18 20886544 20886799 + 0 NA intron (ENSMUSG00000033382.15, intron 1 of 28) protein_coding-intron (ENSMUSG00000033382.15, intron 1 of 15) 9422 ENSMUSG00000033382.15 ENSMUSG00000033382 ENSMUST00000224530 Trappc8 protein_coding Interval_69323 chr16 92213622 92215972 + 0 NA Intergenic Intergenic -7309 ENSMUSG00000116878.1 ENSMUSG00000116878 ENSMUST00000231551 Gm29880 processed_transcript Interval_6005 chr1 93852706 93852955 + 0 NA TTS (ENSMUSG00000073609.9) protein_coding-TTS (ENSMUSG00000073609.9) -8476 ENSMUSG00000094651.2 ENSMUSG00000094651 ENSMUST00000187896 Gal3st2 protein_coding Interval_16328 chr10 62269352 62270252 + 0 NA TTS (ENSMUSG00000037012.18) protein_coding-TTS (ENSMUSG00000037012.18) 17364 ENSMUSG00000020081.5 ENSMUSG00000020081 ENSMUST00000020278 Tacr2 protein_coding Interval_20137 chr10 115207043 115207825 + 0 NA intron (ENSMUSG00000020130.9, intron 9 of 11) protein_coding-intron (ENSMUSG00000020130.9, intron 14 of 16) -31876 ENSMUSG00000006764.8 ENSMUSG00000006764 ENSMUST00000155794 Tph2 protein_coding Interval_8650 chr1 146224478 146224692 + 0 NA Intergenic Intergenic -195851 ENSMUSG00000090323.2 ENSMUSG00000090323 ENSMUST00000163646 Gm5263 processed_pseudogene Interval_34630 chr12 8207696 8208536 + 0 NA promoter-TSS (ENSMUSG00000037669.15) protein_coding-promoter-TSS (ENSMUSG00000037669.15) -33 ENSMUSG00000037669.15 ENSMUSG00000037669 ENSMUST00000219532 Ldah protein_coding Interval_22165 chr11 6733582 6733849 + 0 NA Intergenic Intergenic -13678 ENSMUSG00000086808.1 ENSMUSG00000086808 ENSMUST00000139769 Gm11981 processed_transcript Interval_130593 chr5 129075291 129075719 + 0 NA Intergenic Intergenic -21252 ENSMUSG00000044017.16 ENSMUSG00000044017 ENSMUST00000156437 Adgrd1 protein_coding Interval_147754 chr7 73380939 73381405 + 0 NA intron (ENSMUSG00000070509.15, intron 1 of 2) protein_coding-intron (ENSMUSG00000070509.15, intron 1 of 3) -5398 ENSMUSG00000097756.2 ENSMUSG00000097756 ENSMUST00000206959 A730056A06Rik antisense Interval_59057 chr15 42665719 42666446 + 0 NA intron (ENSMUSG00000022309.9, intron 1 of 1) protein_coding-intron (ENSMUSG00000022309.9, intron 1 of 8) -10243 ENSMUSG00000097805.2 ENSMUSG00000097805 ENSMUST00000228544 Gm17473 antisense Interval_129965 chr5 123355755 123356322 + 0 NA exon (ENSMUSG00000029438.9, exon 3 of 3) protein_coding-exon (ENSMUSG00000029438.9, exon 3 of 3) -4794 ENSMUSG00000065191.1 ENSMUSG00000065191 ENSMUST00000083257 Gm23458 snRNA Interval_146167 chr7 44484901 44485961 + 0 NA TTS (ENSMUSG00000108322.2) lincRNA-TTS (ENSMUSG00000108322.2) 11082 ENSMUSG00000008140.18 ENSMUSG00000008140 ENSMUST00000123928 Emc10 protein_coding Interval_112944 chr4 46321465 46321658 + 0 NA intron (ENSMUSG00000087383.7, intron 3 of 4) antisense-intron (ENSMUSG00000087383.7, intron 3 of 4) -5735 ENSMUSG00000080816.1 ENSMUSG00000080816 ENSMUST00000119110 Gm12447 processed_pseudogene Interval_143116 chr6 149460836 149461870 + 0 NA intron (ENSMUSG00000003452.15, intron 1 of 9) protein_coding-intron (ENSMUSG00000003452.15, intron 1 of 9) -26880 ENSMUSG00000082072.1 ENSMUSG00000082072 ENSMUST00000119145 Gm15785 processed_pseudogene Interval_78275 chr18 11211178 11211660 + 0 NA Intergenic Intergenic 158375 ENSMUSG00000005836.10 ENSMUSG00000005836 ENSMUST00000234971 Gata6 protein_coding Interval_36870 chr12 54834948 54835505 + 0 NA Intergenic Intergenic -27421 ENSMUSG00000113209.1 ENSMUSG00000113209 ENSMUST00000220682 1700081N11Rik bidirectional_promoter_lncRNA Interval_5642 chr1 90495210 90495454 + 0 NA Intergenic Intergenic -25164 ENSMUSG00000103292.1 ENSMUSG00000103292 ENSMUST00000192105 Gm35048 TEC Interval_82155 chr18 68124689 68125163 + 0 NA intron (ENSMUSG00000024544.9, intron 3 of 5) protein_coding-intron (ENSMUSG00000024544.9, intron 3 of 5) -6552 ENSMUSG00000117891.1 ENSMUSG00000117891 ENSMUST00000236198 Gm41764 antisense Interval_60124 chr15 65918620 65919136 + 0 NA intron (ENSMUSG00000072511.3, intron 16 of 17) protein_coding-intron (ENSMUSG00000072511.3, intron 16 of 17) 10055 ENSMUSG00000092454.1 ENSMUSG00000092454 ENSMUST00000173338 Gm2991 processed_pseudogene Interval_14402 chr10 32960430 32961135 + 0 NA Intergenic Intergenic -21097 ENSMUSG00000112469.1 ENSMUSG00000112469 ENSMUST00000218959 Gm47823 lincRNA Interval_26285 chr11 55771982 55772294 + 0 NA promoter-TSS (ENSMUSG00000086020.1) antisense-promoter-TSS (ENSMUSG00000086020.1) 50 ENSMUSG00000086020.1 ENSMUSG00000086020 ENSMUST00000134285 Gm12239 antisense Interval_31926 chr11 103906411 103907220 + 0 NA intron (ENSMUSG00000034187.18, intron 8 of 8) protein_coding-intron (ENSMUSG00000034187.18, intron 8 of 20) -26572 ENSMUSG00000092540.1 ENSMUSG00000092540 ENSMUST00000172606 Gm8738 processed_pseudogene Interval_103392 chr3 41163406 41163808 + 0 NA exon (ENSMUSG00000105258.1, exon 2 of 2) lincRNA-exon (ENSMUSG00000105258.1, exon 2 of 2) 9056 ENSMUSG00000105258.1 ENSMUSG00000105258 ENSMUST00000197878 Gm40038 lincRNA Interval_151366 chr7 121828710 121829176 + 0 NA Intergenic Intergenic 10122 ENSMUSG00000108410.1 ENSMUSG00000108410 ENSMUST00000205603 Gm44740 TEC Interval_40738 chr12 108060636 108060852 + 0 NA Intergenic Intergenic -57330 ENSMUSG00000048251.15 ENSMUSG00000048251 ENSMUST00000109891 Bcl11b protein_coding Interval_77951 chr18 6029541 6030288 + 0 NA intron (ENSMUSG00000041225.16, intron 15 of 18) protein_coding-intron (ENSMUSG00000041225.16, intron 15 of 18) -14893 ENSMUSG00000117548.1 ENSMUSG00000117548 ENSMUST00000234469 Gm41662 TEC Interval_10205 chr1 167182519 167183264 + 0 NA Intergenic Intergenic 3497 ENSMUSG00000103333.1 ENSMUSG00000103333 ENSMUST00000192124 Gm37994 processed_pseudogene Interval_93168 chr2 70800600 70800899 + 0 NA intron (ENSMUSG00000041997.16, intron 1 of 21) protein_coding-intron (ENSMUSG00000041997.16, intron 1 of 19) -55940 ENSMUSG00000082303.1 ENSMUSG00000082303 ENSMUST00000120668 Gm13633 processed_pseudogene Interval_88397 chr2 4736894 4737150 + 0 NA intron (ENSMUSG00000048186.14, intron 2 of 8) protein_coding-intron (ENSMUSG00000048186.14, intron 2 of 8) 19191 ENSMUSG00000048186.14 ENSMUSG00000048186 ENSMUST00000138322 Bend7 protein_coding Interval_90579 chr2 31233661 31233889 + 0 NA Intergenic Intergenic -12391 ENSMUSG00000062661.6 ENSMUSG00000062661 ENSMUST00000150670 Ncs1 protein_coding Interval_138158 chr6 85595312 85595528 + 0 NA intron (ENSMUSG00000063810.7, intron 1 of 22) protein_coding-intron (ENSMUSG00000063810.7, intron 1 of 22) 7774 ENSMUSG00000063810.7 ENSMUSG00000063810 ENSMUST00000201221 Alms1 protein_coding Interval_170750 chr9 110522991 110523735 + 0 NA intron (ENSMUSG00000032489.17, intron 20 of 20) protein_coding-intron (ENSMUSG00000032489.17, intron 20 of 20) -19848 ENSMUSG00000104983.1 ENSMUSG00000104983 ENSMUST00000199595 Gm42763 TEC Interval_142631 chr6 144418845 144419030 + 0 NA intron (ENSMUSG00000041540.16, intron 4 of 6) protein_coding-intron (ENSMUSG00000041540.16, intron 4 of 13) -62288 ENSMUSG00000087157.1 ENSMUSG00000087157 ENSMUST00000156443 Sox5os2 antisense Interval_25708 chr11 50930978 50931984 + 0 NA promoter-TSS (ENSMUSG00000020335.13) protein_coding-promoter-TSS (ENSMUSG00000020335.13) -548 ENSMUSG00000020335.13 ENSMUSG00000020335 ENSMUST00000152296 Zfp354b protein_coding Interval_32626 chr11 109258321 109259489 + 0 NA intron (ENSMUSG00000020599.13, intron 9 of 9) protein_coding-intron (ENSMUSG00000020599.13, intron 9 of 18) -11940 ENSMUSG00000020599.13 ENSMUSG00000020599 ENSMUST00000106704 Rgs9 protein_coding Interval_55538 chr14 91259342 91259694 + 0 NA Intergenic Intergenic -59640 ENSMUSG00000115225.1 ENSMUSG00000115225 ENSMUST00000226887 Gm7272 processed_pseudogene Interval_157496 chr8 70891288 70892231 + 0 NA intron (ENSMUSG00000000792.2, intron 1 of 14) protein_coding-intron (ENSMUSG00000000792.2, intron 1 of 14) 998 ENSMUSG00000000792.2 ENSMUSG00000000792 ENSMUST00000000809 Slc5a5 protein_coding Interval_65385 chr16 22053384 22054027 + 0 NA exon (ENSMUSG00000068487.6, exon 1 of 1) processed_pseudogene-exon (ENSMUSG00000068487.6, exon 1 of 1) 195 ENSMUSG00000068487.6 ENSMUSG00000068487 ENSMUST00000132879 Ndufa11b processed_pseudogene Interval_157517 chr8 71142451 71144087 + 0 NA Intergenic Intergenic 23927 ENSMUSG00000098594.1 ENSMUSG00000098594 ENSMUST00000184911 Gm27628 miRNA Interval_114489 chr4 81076759 81076951 + 0 NA Intergenic Intergenic 109411 ENSMUSG00000099273.1 ENSMUSG00000099273 ENSMUST00000184920 Gm27452 miRNA Interval_25985 chr11 53323661 53325013 + 0 NA promoter-TSS (ENSMUSG00000018239.9) protein_coding-promoter-TSS (ENSMUSG00000018239.9) -3063 ENSMUSG00000018239.9 ENSMUSG00000018239 ENSMUST00000141585 Zcchc10 protein_coding Interval_31086 chr11 98045536 98045910 + 0 NA intron (ENSMUSG00000017400.10, intron 1 of 10) protein_coding-intron (ENSMUSG00000017400.10, intron 1 of 10) -2181 ENSMUSG00000017400.10 ENSMUSG00000017400 ENSMUST00000131519 Stac2 protein_coding Interval_110661 chr4 5790629 5791192 + 0 NA intron (ENSMUSG00000049119.14, intron 1 of 1) protein_coding-intron (ENSMUSG00000049119.14, intron 2 of 2) 18031 ENSMUSG00000049119.14 ENSMUSG00000049119 ENSMUST00000145365 Fam110b protein_coding Interval_2091 chr1 36336533 36336737 + 0 NA TTS (ENSMUSG00000010453.12) protein_coding-TTS (ENSMUSG00000010453.12) 3927 ENSMUSG00000102762.1 ENSMUSG00000102762 ENSMUST00000192234 4930403P22Rik lincRNA Interval_31514 chr11 101119260 101120682 + 0 NA promoter-TSS (ENSMUSG00000017802.14) protein_coding-promoter-TSS (ENSMUSG00000017802.14) -78 ENSMUSG00000017802.14 ENSMUSG00000017802 ENSMUST00000147201 Retreg3 protein_coding Interval_127819 chr5 108028215 108029333 + 0 NA Intergenic Intergenic 26514 ENSMUSG00000084855.2 ENSMUSG00000084855 ENSMUST00000117916 Gm9850 processed_pseudogene Interval_55332 chr14 83182035 83182354 + 0 NA Intergenic Intergenic -223437 ENSMUSG00000088009.1 ENSMUSG00000088009 ENSMUST00000157384 Gm24774 snoRNA Interval_67640 chr16 55049361 55050083 + 0 NA Intergenic Intergenic 77291 ENSMUSG00000064549.1 ENSMUSG00000064549 ENSMUST00000082615 Gm22977 snRNA Interval_101126 chr2 178188653 178188982 + 0 NA intron (ENSMUSG00000027525.18, intron 1 of 12) protein_coding-intron (ENSMUSG00000027525.18, intron 1 of 12) -110392 ENSMUSG00000078861.8 ENSMUSG00000078861 ENSMUST00000108923 Zfp931 protein_coding Interval_3903 chr1 64659238 64659723 + 0 NA Intergenic Intergenic 9545 ENSMUSG00000100437.1 ENSMUSG00000100437 ENSMUST00000189284 Gm29152 lincRNA Interval_12622 chr10 3956470 3956680 + 0 NA exon (ENSMUSG00000040624.18, exon 15 of 16) protein_coding-exon (ENSMUSG00000040624.18, exon 15 of 16) -9484 ENSMUSG00000082605.1 ENSMUSG00000082605 ENSMUST00000119653 Gm16148 processed_pseudogene Interval_126549 chr5 90188912 90189225 + 0 NA Intergenic Intergenic 26954 ENSMUSG00000035505.14 ENSMUSG00000035505 ENSMUST00000148480 Cox18 protein_coding Interval_136169 chr6 51677341 51678136 + 0 NA Intergenic Intergenic 33343 ENSMUSG00000108145.1 ENSMUSG00000108145 ENSMUST00000203781 Gm38811 lincRNA Interval_129327 chr5 119133480 119133775 + 0 NA Intergenic Intergenic 25393 ENSMUSG00000100573.1 ENSMUSG00000100573 ENSMUST00000190550 1700081H04Rik lincRNA Interval_23212 chr11 20586254 20586432 + 0 NA intron (ENSMUSG00000049800.13, intron 1 of 1) protein_coding-intron (ENSMUSG00000049800.13, intron 1 of 1) -11154 ENSMUSG00000083555.1 ENSMUSG00000083555 ENSMUST00000121890 Gm12035 processed_pseudogene Interval_99279 chr2 158616325 158616526 + 0 NA TTS (ENSMUSG00000037771.11) protein_coding-TTS (ENSMUSG00000037771.11) -4605 ENSMUSG00000087563.1 ENSMUSG00000087563 ENSMUST00000138427 Gm14205 antisense Interval_122871 chr5 26590517 26591357 + 0 NA Intergenic Intergenic -8501 ENSMUSG00000105491.1 ENSMUSG00000105491 ENSMUST00000200355 Gm42844 processed_pseudogene Interval_30755 chr11 96286172 96287441 + 0 NA exon (ENSMUSG00000038721.8, exon 1 of 2) protein_coding-exon (ENSMUSG00000038721.8, exon 1 of 2) -1909 ENSMUSG00000038721.8 ENSMUSG00000038721 ENSMUST00000151596 Hoxb7 protein_coding Interval_149362 chr7 97709159 97709911 + 0 NA intron (ENSMUSG00000025439.5, intron 2 of 6) protein_coding-intron (ENSMUSG00000025439.5, intron 2 of 6) -8260 ENSMUSG00000025439.5 ENSMUSG00000025439 ENSMUST00000205667 Clns1a protein_coding Interval_137953 chr6 83697475 83698797 + 0 NA intron (ENSMUSG00000085794.5, intron 2 of 5) antisense-intron (ENSMUSG00000085794.5, intron 2 of 5) -4355 ENSMUSG00000099263.1 ENSMUSG00000099263 ENSMUST00000184900 Gm27772 misc_RNA Interval_27845 chr11 70383237 70383789 + 0 NA Intergenic Intergenic 25375 ENSMUSG00000082145.1 ENSMUSG00000082145 ENSMUST00000120351 Gm12312 processed_pseudogene Interval_167738 chr9 72407440 72410102 + 0 NA promoter-TSS (ENSMUSG00000098801.1) lincRNA-promoter-TSS (ENSMUSG00000098801.1) -497 ENSMUSG00000098801.1 ENSMUSG00000098801 ENSMUST00000184303 Gm27255 lincRNA Interval_168899 chr9 88467500 88467760 + 0 NA intron (ENSMUSG00000032423.12, intron 3 of 3) protein_coding-intron (ENSMUSG00000032423.12, intron 6 of 11) -11014 ENSMUSG00000092541.7 ENSMUSG00000092541 ENSMUST00000154586 Gm20537 protein_coding Interval_99433 chr2 161013019 161013505 + 0 NA TTS (ENSMUSG00000057133.14) protein_coding-TTS (ENSMUSG00000057133.14) 16485 ENSMUSG00000077795.1 ENSMUSG00000077795 ENSMUST00000104607 Gm25561 snoRNA Interval_168227 chr9 78046327 78047409 + 0 NA Intergenic Intergenic -5056 ENSMUSG00000023333.8 ENSMUSG00000023333 ENSMUST00000024104 Gcm1 protein_coding Interval_57125 chr15 6734361 6735030 + 0 NA intron (ENSMUSG00000050310.9, intron 2 of 9) protein_coding-intron (ENSMUSG00000050310.9, intron 2 of 37) 26316 ENSMUSG00000050310.9 ENSMUSG00000050310 ENSMUST00000061656 Rictor protein_coding Interval_126626 chr5 91074200 91075262 + 0 NA promoter-TSS (ENSMUSG00000107350.1) antisense-promoter-TSS (ENSMUSG00000107350.1) 42 ENSMUSG00000107350.1 ENSMUSG00000107350 ENSMUST00000202894 Gm19610 antisense Interval_878 chr1 12912419 12914024 + 0 NA intron (ENSMUSG00000025938.16, intron 2 of 3) protein_coding-intron (ENSMUSG00000025938.16, intron 4 of 7) 77956 ENSMUSG00000025938.16 ENSMUSG00000025938 ENSMUST00000191566 Slco5a1 protein_coding Interval_169073 chr9 91480174 91480569 + 0 NA intron (ENSMUSG00000100341.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000100341.1, intron 1 of 2) 75897 ENSMUSG00000100341.1 ENSMUSG00000100341 ENSMUST00000191272 Gm29478 lincRNA Interval_56988 chr15 3252496 3252711 + 0 NA Intergenic Intergenic -19482 ENSMUSG00000064373.12 ENSMUSG00000064373 ENSMUST00000160930 Selenop protein_coding Interval_81505 chr18 61242523 61242817 + 0 NA intron (ENSMUSG00000024575.16, intron 5 of 21) protein_coding-intron (ENSMUSG00000024575.16, intron 5 of 21) 17302 ENSMUSG00000091957.3 ENSMUSG00000091957 ENSMUST00000076842 Rps2-ps10 transcribed_processed_pseudogene Interval_51221 chr14 25237758 25237967 + 0 NA Intergenic Intergenic -94621 ENSMUSG00000114916.1 ENSMUSG00000114916 ENSMUST00000225429 4930572O13Rik lincRNA Interval_86194 chr19 37692846 37693380 + 0 NA exon (ENSMUSG00000062432.4, exon 6 of 6) protein_coding-exon (ENSMUSG00000062432.4, exon 6 of 6) -4972 ENSMUSG00000024987.6 ENSMUSG00000024987 ENSMUST00000236500 Cyp26a1 protein_coding Interval_108468 chr3 127470221 127470922 + 0 NA intron (ENSMUSG00000032826.19, intron 1 of 1) protein_coding-intron (ENSMUSG00000032826.19, intron 1 of 1) -10549 ENSMUSG00000105116.1 ENSMUSG00000105116 ENSMUST00000196760 Gm44494 miRNA Interval_92552 chr2 60552781 60554009 + 0 NA promoter-TSS (ENSMUSG00000054580.14) protein_coding-promoter-TSS (ENSMUSG00000054580.14) -87 ENSMUSG00000054580.14 ENSMUSG00000054580 ENSMUST00000150373 Pla2r1 protein_coding Interval_147015 chr7 58398353 58399980 + 0 NA Intergenic Intergenic -118996 ENSMUSG00000109348.1 ENSMUSG00000109348 ENSMUST00000207950 Gm44852 processed_pseudogene Interval_31858 chr11 103403587 103404601 + 0 NA intron (ENSMUSG00000034247.9, intron 1 of 11) protein_coding-intron (ENSMUSG00000034247.9, intron 1 of 11) -9326 ENSMUSG00000034247.9 ENSMUSG00000034247 ENSMUST00000184350 Plekhm1 protein_coding Interval_137799 chr6 82610934 82611706 + 0 NA Intergenic Intergenic -68812 ENSMUSG00000107453.1 ENSMUSG00000107453 ENSMUST00000203711 Gm44145 antisense Interval_48538 chr13 99940506 99941356 + 0 NA Intergenic Intergenic 34385 ENSMUSG00000021646.9 ENSMUSG00000021646 ENSMUST00000221846 Mccc2 protein_coding Interval_113379 chr4 53961249 53962258 + 0 NA Intergenic Intergenic -42304 ENSMUSG00000089552.1 ENSMUSG00000089552 ENSMUST00000158927 Gm24177 snoRNA Interval_59886 chr15 60822358 60825130 + 0 NA promoter-TSS (ENSMUSG00000097493.3) processed_transcript-promoter-TSS (ENSMUSG00000097493.3) 791 ENSMUSG00000097493.3 ENSMUSG00000097493 ENSMUST00000181910 9930014A18Rik processed_transcript Interval_68154 chr16 65946736 65947565 + 0 NA promoter-TSS (ENSMUSG00000116671.1) processed_pseudogene-promoter-TSS (ENSMUSG00000116671.1) 44 ENSMUSG00000116671.1 ENSMUSG00000116671 ENSMUST00000231495 Gm49635 processed_pseudogene Interval_136709 chr6 58292092 58293027 + 0 NA Intergenic Intergenic -8990 ENSMUSG00000091734.2 ENSMUSG00000091734 ENSMUST00000168416 Vmn1r29 protein_coding Interval_125243 chr5 65614710 65615959 + 0 NA TTS (ENSMUSG00000029202.12) protein_coding-TTS (ENSMUSG00000029202.12) -1615 ENSMUSG00000106767.1 ENSMUSG00000106767 ENSMUST00000202446 Gm42727 TEC Interval_163781 chr9 25616023 25616247 + 0 NA Intergenic Intergenic -46330 ENSMUSG00000077697.1 ENSMUSG00000077697 ENSMUST00000104509 Gm25346 snoRNA Interval_86250 chr19 38074881 38076600 + 0 NA Intergenic Intergenic 3811 ENSMUSG00000064646.1 ENSMUSG00000064646 ENSMUST00000082712 Gm23300 snoRNA Interval_170609 chr9 109430773 109431006 + 0 NA Intergenic Intergenic -9239 ENSMUSG00000105162.1 ENSMUSG00000105162 ENSMUST00000196515 Gm42494 TEC Interval_134452 chr6 28860332 28860750 + 0 NA intron (ENSMUSG00000001424.14, intron 1 of 2) protein_coding-intron (ENSMUSG00000001424.14, intron 16 of 23) -30196 ENSMUSG00000049939.6 ENSMUSG00000049939 ENSMUST00000062304 Lrrc4 protein_coding Interval_157650 chr8 72032574 72033327 + 0 NA Intergenic Intergenic -2295 ENSMUSG00000110546.1 ENSMUSG00000110546 ENSMUST00000211916 Gm45734 processed_pseudogene Interval_110730 chr4 7464526 7464885 + 0 NA Intergenic Intergenic -95983 ENSMUSG00000086070.1 ENSMUSG00000086070 ENSMUST00000129988 8430436N08Rik lincRNA Interval_155528 chr8 34120348 34120756 + 0 NA promoter-TSS (ENSMUSG00000109869.1) antisense-promoter-TSS (ENSMUSG00000109869.1) -344 ENSMUSG00000109869.1 ENSMUSG00000109869 ENSMUST00000210178 Gm39158 antisense Interval_120904 chr4 151449364 151450418 + 0 NA intron (ENSMUSG00000014592.21, intron 5 of 24) protein_coding-intron (ENSMUSG00000014592.21, intron 5 of 23) 73421 ENSMUSG00000085593.1 ENSMUSG00000085593 ENSMUST00000129097 4930589P08Rik antisense Interval_148438 chr7 81234421 81235074 + 0 NA intron (ENSMUSG00000025584.17, intron 1 of 21) protein_coding-intron (ENSMUSG00000025584.17, intron 1 of 21) -11873 ENSMUSG00000083774.1 ENSMUSG00000083774 ENSMUST00000121753 Gm7180 processed_pseudogene Interval_101695 chr3 8988401 8989153 + 0 NA promoter-TSS (ENSMUSG00000027506.15) protein_coding-promoter-TSS (ENSMUSG00000027506.15) 15701 ENSMUSG00000027506.15 ENSMUSG00000027506 ENSMUST00000155450 Tpd52 protein_coding Interval_20823 chr10 121309998 121311280 + 0 NA intron (ENSMUSG00000052302.6, intron 2 of 5) protein_coding-intron (ENSMUSG00000052302.6, intron 1 of 11) -32537 ENSMUSG00000111940.1 ENSMUSG00000111940 ENSMUST00000218322 Gm4478 processed_pseudogene Interval_156794 chr8 60345922 60346515 + 0 NA Intergenic Intergenic 150416 ENSMUSG00000109966.1 ENSMUSG00000109966 ENSMUST00000210900 Gm34623 lincRNA Interval_113889 chr4 59608715 59609086 + 0 NA intron (ENSMUSG00000028383.17, intron 9 of 11) protein_coding-intron (ENSMUSG00000028383.17, intron 8 of 10) 14590 ENSMUSG00000028383.17 ENSMUSG00000028383 ENSMUST00000128792 Hsdl2 protein_coding Interval_45874 chr13 58668435 58669683 + 0 NA promoter-TSS (ENSMUSG00000114380.1) processed_pseudogene-promoter-TSS (ENSMUSG00000114380.1) -220 ENSMUSG00000114380.1 ENSMUSG00000114380 ENSMUST00000225253 Gm47942 processed_pseudogene Interval_22821 chr11 16350785 16351422 + 0 NA intron (ENSMUSG00000048834.16, intron 4 of 6) protein_coding-intron (ENSMUSG00000048834.16, intron 4 of 6) -88151 ENSMUSG00000083925.1 ENSMUSG00000083925 ENSMUST00000118857 Gm12012 processed_pseudogene Interval_40942 chr12 110066356 110066846 + 0 NA intron (ENSMUSG00000113868.1, intron 2 of 2) lincRNA-intron (ENSMUSG00000113868.1, intron 2 of 2) 4331 ENSMUSG00000113217.1 ENSMUSG00000113217 ENSMUST00000220598 Gm47187 processed_pseudogene Interval_22881 chr11 17071744 17072038 + 0 NA intron (ENSMUSG00000044629.5, intron 2 of 2) protein_coding-intron (ENSMUSG00000044629.5, intron 2 of 2) 20088 ENSMUSG00000044629.5 ENSMUSG00000044629 ENSMUST00000058159 Cnrip1 protein_coding Interval_74515 chr17 52680303 52680959 + 0 NA intron (ENSMUSG00000035580.10, intron 1 of 15) protein_coding-intron (ENSMUSG00000035580.10, intron 1 of 15) -77971 ENSMUSG00000098552.1 ENSMUSG00000098552 ENSMUST00000183438 Gm27217 antisense Interval_24314 chr11 32308602 32309346 + 0 NA Intergenic Intergenic 8905 ENSMUSG00000020295.1 ENSMUSG00000020295 ENSMUST00000020535 Hbq1a protein_coding Interval_74794 chr17 56575476 56577098 + 0 NA promoter-TSS (ENSMUSG00000042625.16) protein_coding-promoter-TSS (ENSMUSG00000042625.16) -3789 ENSMUSG00000042625.16 ENSMUSG00000042625 ENSMUST00000146070 Safb2 protein_coding Interval_41874 chr13 3768047 3768283 + 0 NA intron (ENSMUSG00000113759.1, intron 2 of 2) lincRNA-intron (ENSMUSG00000113759.1, intron 2 of 2) -1996 ENSMUSG00000113259.1 ENSMUSG00000113259 ENSMUST00000222335 Gm35190 lincRNA Interval_174043 chrX 131977848 131978371 + 0 NA Intergenic Intergenic -128036 ENSMUSG00000082117.1 ENSMUSG00000082117 ENSMUST00000118379 Gm4994 processed_pseudogene Interval_151608 chr7 125184947 125185712 + 0 NA Intergenic Intergenic 34557 ENSMUSG00000073844.5 ENSMUSG00000073844 ENSMUST00000073056 Gm21957 processed_pseudogene Interval_39027 chr12 84552535 84553430 + 0 NA Intergenic Intergenic -16858 ENSMUSG00000021239.12 ENSMUSG00000021239 ENSMUST00000169934 Vsx2 protein_coding Interval_74197 chr17 47064687 47065269 + 0 NA Intergenic Intergenic -21939 ENSMUSG00000062472.6 ENSMUSG00000062472 ENSMUST00000075152 Gm4945 processed_pseudogene Interval_155861 chr8 40359079 40359269 + 0 NA exon (ENSMUSG00000039478.15, exon 1 of 3) protein_coding-exon (ENSMUSG00000039478.15, exon 1 of 3) 4871 ENSMUSG00000039478.15 ENSMUSG00000039478 ENSMUST00000132481 Micu3 protein_coding Interval_50442 chr14 13284198 13285491 + 0 NA promoter-TSS (ENSMUSG00000051729.12) processed_transcript-promoter-TSS (ENSMUSG00000051729.12) 3 ENSMUSG00000056296.17 ENSMUSG00000056296 ENSMUST00000112656 Synpr protein_coding Interval_158221 chr8 80007012 80007325 + 0 NA intron (ENSMUSG00000064325.4, intron 4 of 12) protein_coding-intron (ENSMUSG00000064325.4, intron 4 of 12) -16819 ENSMUSG00000064325.4 ENSMUSG00000064325 ENSMUST00000079038 Hhip protein_coding Interval_63837 chr16 3889999 3890906 + 0 NA intron (ENSMUSG00000005982.14, intron 1 of 6) protein_coding-intron (ENSMUSG00000005982.14, intron 1 of 6) 5769 ENSMUSG00000005982.14 ENSMUSG00000005982 ENSMUST00000150655 Naa60 protein_coding Interval_53635 chr14 60451693 60452470 + 0 NA Intergenic Intergenic 10102 ENSMUSG00000114948.1 ENSMUSG00000114948 ENSMUST00000225258 Gm6066 processed_pseudogene Interval_20842 chr10 121441900 121442399 + 0 NA intron (ENSMUSG00000112009.1, intron 1 of 1) protein_coding-intron (ENSMUSG00000025795.8, intron 1 of 4) 20064 ENSMUSG00000025795.8 ENSMUSG00000025795 ENSMUST00000219500 Rassf3 protein_coding Interval_144286 chr7 24298438 24300078 + 0 NA promoter-TSS (ENSMUSG00000050605.17) protein_coding-promoter-TSS (ENSMUSG00000050605.17) 379 ENSMUSG00000050605.17 ENSMUSG00000050605 ENSMUST00000206535 Zfp61 protein_coding Interval_120161 chr4 143121848 143122115 + 0 NA intron (ENSMUSG00000057637.13, intron 8 of 9) protein_coding-intron (ENSMUSG00000057637.13, intron 8 of 9) 14181 ENSMUSG00000106597.1 ENSMUSG00000106597 ENSMUST00000197026 Mir7021 miRNA Interval_18185 chr10 83405029 83405527 + 0 NA exon (ENSMUSG00000020255.8, exon 4 of 4) protein_coding-exon (ENSMUSG00000020255.8, exon 4 of 4) 45057 ENSMUSG00000020255.8 ENSMUSG00000020255 ENSMUST00000020488 D10Wsu102e protein_coding Interval_126737 chr5 92413440 92414200 + 0 NA intron (ENSMUSG00000034842.16, intron 6 of 6) protein_coding-intron (ENSMUSG00000034842.16, intron 9 of 9) 11111 ENSMUSG00000034826.14 ENSMUSG00000034826 ENSMUST00000130156 Nup54 protein_coding Interval_120142 chr4 142989263 142990115 + 0 NA intron (ENSMUSG00000110067.2, intron 1 of 1) protein_coding-intron (ENSMUSG00000110067.2, intron 1 of 2) 84077 ENSMUSG00000110067.2 ENSMUSG00000110067 ENSMUST00000238915 6330411D24Rik protein_coding Interval_46722 chr13 69635782 69636238 + 0 NA TTS (ENSMUSG00000021595.18) protein_coding-TTS (ENSMUSG00000021595.18) 19502 ENSMUSG00000113790.1 ENSMUSG00000113790 ENSMUST00000222550 Gm17872 processed_pseudogene Interval_48564 chr13 100324441 100324668 + 0 NA Intergenic Intergenic -6880 ENSMUSG00000078942.10 ENSMUSG00000078942 ENSMUST00000118574 Naip6 protein_coding Interval_150851 chr7 115724835 115725560 + 0 NA intron (ENSMUSG00000051910.13, intron 4 of 11) protein_coding-intron (ENSMUSG00000051910.13, intron 4 of 16) 120954 ENSMUSG00000051910.13 ENSMUSG00000051910 ENSMUST00000206912 Sox6 protein_coding Interval_69883 chr16 97869988 97870353 + 0 NA TTS (ENSMUSG00000045975.8) protein_coding-TTS (ENSMUSG00000045975.8) 7121 ENSMUSG00000105138.1 ENSMUSG00000105138 ENSMUST00000200252 Mir6964 miRNA Interval_671 chr1 9755476 9755923 + 0 NA intron (ENSMUSG00000097893.8, intron 3 of 4) antisense-intron (ENSMUSG00000097893.8, intron 2 of 6) 7073 ENSMUSG00000097893.8 ENSMUSG00000097893 ENSMUST00000189322 1700034P13Rik antisense Interval_70585 chr17 12142040 12142241 + 0 NA intron (ENSMUSG00000023827.8, intron 1 of 3) protein_coding-intron (ENSMUSG00000023827.8, intron 1 of 8) 22811 ENSMUSG00000023827.8 ENSMUSG00000023827 ENSMUST00000167905 Agpat4 protein_coding Interval_118776 chr4 133645318 133645988 + 0 NA intron (ENSMUSG00000037553.14, intron 1 of 1) protein_coding-intron (ENSMUSG00000037553.14, intron 1 of 1) 4501 ENSMUSG00000037553.14 ENSMUSG00000037553 ENSMUST00000146464 Zdhhc18 protein_coding Interval_141565 chr6 129347979 129348285 + 0 NA intron (ENSMUSG00000053063.11, intron 1 of 6) protein_coding-intron (ENSMUSG00000053063.11, intron 1 of 6) 5441 ENSMUSG00000053063.11 ENSMUSG00000053063 ENSMUST00000133756 Clec12a protein_coding Interval_147016 chr7 58412672 58413497 + 0 NA Intergenic Intergenic -105078 ENSMUSG00000109348.1 ENSMUSG00000109348 ENSMUST00000207950 Gm44852 processed_pseudogene Interval_96471 chr2 124294894 124295277 + 0 NA intron (ENSMUSG00000027200.17, intron 1 of 4) protein_coding-intron (ENSMUSG00000027200.17, intron 2 of 20) -72754 ENSMUSG00000086954.1 ENSMUSG00000086954 ENSMUST00000136658 4930583P06Rik lincRNA Interval_32025 chr11 104536794 104537176 + 0 NA intron (ENSMUSG00000020687.13, intron 1 of 3) protein_coding-intron (ENSMUSG00000020687.13, intron 1 of 18) 13635 ENSMUSG00000020687.13 ENSMUSG00000020687 ENSMUST00000135303 Cdc27 protein_coding Interval_43351 chr13 29575518 29575970 + 0 NA intron (ENSMUSG00000006191.17, intron 9 of 10) protein_coding-intron (ENSMUSG00000006191.17, intron 9 of 15) -58290 ENSMUSG00000006191.17 ENSMUSG00000006191 ENSMUST00000129231 Cdkal1 protein_coding Interval_26516 chr11 58315904 58317466 + 0 NA TTS (ENSMUSG00000049755.14) protein_coding-TTS (ENSMUSG00000049755.14) -6303 ENSMUSG00000087347.1 ENSMUSG00000087347 ENSMUST00000145068 1700047K16Rik processed_transcript Interval_145588 chr7 35745575 35748902 + 0 NA intron (ENSMUSG00000043671.14, intron 3 of 18) protein_coding-intron (ENSMUSG00000043671.14, intron 3 of 18) 31930 ENSMUSG00000044452.10 ENSMUSG00000044452 ENSMUST00000206003 Zfp507 protein_coding Interval_156777 chr8 58961049 58961344 + 0 NA Intergenic Intergenic 48939 ENSMUSG00000049946.7 ENSMUSG00000049946 ENSMUST00000160055 BC030500 protein_coding Interval_35481 chr12 22971533 22972911 + 0 NA intron (ENSMUSG00000073164.11, intron 3 of 4) lincRNA-intron (ENSMUSG00000073164.11, intron 2 of 3) -11916 ENSMUSG00000113670.1 ENSMUSG00000113670 ENSMUST00000222206 Gm49686 transcribed_unprocessed_pseudogene Interval_64777 chr16 15636751 15638248 + 0 NA promoter-TSS (ENSMUSG00000022672.8) protein_coding-promoter-TSS (ENSMUSG00000022672.8) -367 ENSMUSG00000022672.8 ENSMUSG00000022672 ENSMUST00000023352 Prkdc protein_coding Interval_30479 chr11 94629796 94631584 + 0 NA intron (ENSMUSG00000020869.8, intron 1 of 3) protein_coding-intron (ENSMUSG00000020869.8, intron 1 of 6) 876 ENSMUSG00000020869.8 ENSMUSG00000020869 ENSMUST00000138782 Lrrc59 protein_coding Interval_11387 chr1 181464615 181465847 + 0 NA Intergenic Intergenic -32831 ENSMUSG00000089927.1 ENSMUSG00000089927 ENSMUST00000160086 Gm16539 unprocessed_pseudogene Interval_44139 chr13 41152833 41153534 + 0 NA promoter-TSS (ENSMUSG00000038651.15) protein_coding-promoter-TSS (ENSMUSG00000038651.15) -205 ENSMUSG00000038651.15 ENSMUSG00000038651 ENSMUST00000145810 Sycp2l protein_coding Interval_92954 chr2 68932452 68933650 + 0 NA intron (ENSMUSG00000027035.10, intron 1 of 10) protein_coding-intron (ENSMUSG00000027035.10, intron 1 of 9) 27048 ENSMUSG00000103747.1 ENSMUSG00000103747 ENSMUST00000192661 Gm38236 TEC Interval_125283 chr5 65937398 65938740 + 0 NA intron (ENSMUSG00000029205.12, intron 2 of 3) protein_coding-intron (ENSMUSG00000029205.12, intron 1 of 3) 3148 ENSMUSG00000029205.12 ENSMUSG00000029205 ENSMUST00000201664 Chrna9 protein_coding Interval_105882 chr3 89895920 89898386 + 0 NA intron (ENSMUSG00000027947.11, intron 1 of 9) protein_coding-intron (ENSMUSG00000027947.11, intron 1 of 9) -15763 ENSMUSG00000105941.1 ENSMUSG00000105941 ENSMUST00000198429 Gm42809 antisense Interval_11896 chr1 186849762 186849960 + 0 NA Intergenic Intergenic -77101 ENSMUSG00000103503.1 ENSMUSG00000103503 ENSMUST00000194671 1700023G09Rik lincRNA Interval_5630 chr1 90423863 90425201 + 0 NA Intergenic Intergenic 29969 ENSMUSG00000101997.1 ENSMUSG00000101997 ENSMUST00000187630 Gm28722 lincRNA Interval_57127 chr15 6764001 6764890 + 0 NA TTS (ENSMUSG00000050310.9) protein_coding-TTS (ENSMUSG00000050310.9) 56066 ENSMUSG00000050310.9 ENSMUSG00000050310 ENSMUST00000061656 Rictor protein_coding Interval_157596 chr8 71627307 71627862 + 0 NA exon (ENSMUSG00000034799.16, exon 44 of 44) protein_coding-exon (ENSMUSG00000034799.16, exon 44 of 44) 3522 ENSMUSG00000098976.1 ENSMUSG00000098976 ENSMUST00000184793 Mir6769b miRNA Interval_173706 chrX 102214957 102215829 + 0 NA Intergenic Intergenic 6991 ENSMUSG00000081263.1 ENSMUSG00000081263 ENSMUST00000117752 Gm14859 processed_pseudogene Interval_154739 chr8 22974172 22975740 + 0 NA promoter-TSS (ENSMUSG00000031543.18) protein_coding-promoter-TSS (ENSMUSG00000031543.18) -16515 ENSMUSG00000109793.1 ENSMUSG00000109793 ENSMUST00000210691 Gm10043 processed_pseudogene Interval_108685 chr3 130078252 130078585 + 0 NA Intergenic Intergenic -2361 ENSMUSG00000106072.1 ENSMUSG00000106072 ENSMUST00000199883 Gm42663 processed_pseudogene Interval_114778 chr4 85204860 85206193 + 0 NA promoter-TSS (ENSMUSG00000028488.15) protein_coding-promoter-TSS (ENSMUSG00000028488.15) 28999 ENSMUSG00000084267.1 ENSMUSG00000084267 ENSMUST00000119153 Gm12417 processed_pseudogene Interval_126461 chr5 88688297 88689788 + 0 NA Intergenic Intergenic -13372 ENSMUSG00000044221.14 ENSMUSG00000044221 ENSMUST00000137725 Grsf1 protein_coding Interval_137436 chr6 72283870 72284712 + 0 NA Intergenic Intergenic -20334 ENSMUSG00000056370.15 ENSMUSG00000056370 ENSMUST00000182765 Sftpb protein_coding Interval_114879 chr4 86668322 86670428 + 0 NA intron (ENSMUSG00000028494.12, intron 1 of 2) protein_coding-intron (ENSMUSG00000028494.12, intron 1 of 7) -10692 ENSMUSG00000028494.12 ENSMUSG00000028494 ENSMUST00000134094 Plin2 protein_coding Interval_141170 chr6 125384836 125385853 + 0 NA Intergenic Intergenic -4551 ENSMUSG00000038167.6 ENSMUSG00000038167 ENSMUST00000042647 Plekhg6 protein_coding Interval_114865 chr4 86538155 86539627 + 0 NA intron (ENSMUSG00000028492.13, intron 1 of 2) protein_coding-intron (ENSMUSG00000028492.13, intron 1 of 3) 226 ENSMUSG00000028492.13 ENSMUSG00000028492 ENSMUST00000139694 Saxo1 protein_coding Interval_64050 chr16 6480332 6480788 + 0 NA intron (ENSMUSG00000008658.16, intron 1 of 14) protein_coding-intron (ENSMUSG00000008658.16, intron 1 of 14) 504975 ENSMUSG00000101481.1 ENSMUSG00000101481 ENSMUST00000190515 1700123O21Rik sense_intronic Interval_90384 chr2 30106438 30108884 + 0 NA promoter-TSS (ENSMUSG00000039686.14) protein_coding-promoter-TSS (ENSMUSG00000039686.14) -14642 ENSMUSG00000015335.16 ENSMUSG00000015335 ENSMUST00000137001 Zdhhc12 protein_coding Interval_30848 chr11 96860516 96862386 + 0 NA TTS (ENSMUSG00000018672.15) protein_coding-TTS (ENSMUSG00000018672.15) -8744 ENSMUSG00000083651.1 ENSMUSG00000083651 ENSMUST00000119349 Gm11524 processed_pseudogene Interval_35971 chr12 32995056 32995251 + 0 NA Intergenic Intergenic 4857 ENSMUSG00000089136.1 ENSMUSG00000089136 ENSMUST00000158511 Gm24922 snRNA Interval_74611 chr17 53727609 53728436 + 0 NA intron (ENSMUSG00000062036.9, intron 3 of 7) transcribed_processed_pseudogene-intron (ENSMUSG00000062036.9, intron 3 of 7) 4332 ENSMUSG00000062036.9 ENSMUSG00000062036 ENSMUST00000184922 4932415M13Rik transcribed_processed_pseudogene Interval_61943 chr15 85384715 85385376 + 0 NA intron (ENSMUSG00000016541.10, intron 6 of 11) protein_coding-intron (ENSMUSG00000016541.10, intron 6 of 11) -33791 ENSMUSG00000064764.1 ENSMUSG00000064764 ENSMUST00000082830 Gm23517 snRNA Interval_7285 chr1 128432806 128433040 + 0 NA Intergenic Intergenic -53436 ENSMUSG00000026356.15 ENSMUSG00000026356 ENSMUST00000064309 Dars protein_coding Interval_157142 chr8 66302745 66303035 + 0 NA intron (ENSMUSG00000036469.16, intron 2 of 5) protein_coding-intron (ENSMUSG00000036469.16, intron 2 of 5) 84645 ENSMUSG00000086156.1 ENSMUSG00000086156 ENSMUST00000132019 Gm15354 antisense Interval_76074 chr17 74725393 74725596 + 0 NA intron (ENSMUSG00000024078.7, intron 4 of 19) protein_coding-intron (ENSMUSG00000024078.7, intron 4 of 19) -44572 ENSMUSG00000024078.7 ENSMUSG00000024078 ENSMUST00000234264 Ttc27 protein_coding Interval_22245 chr11 7992948 7993735 + 0 NA TTS (ENSMUSG00000084318.1) unprocessed_pseudogene-TTS (ENSMUSG00000084318.1) 2511 ENSMUSG00000084318.1 ENSMUSG00000084318 ENSMUST00000118524 Gm11987 unprocessed_pseudogene Interval_146465 chr7 46100413 46101072 + 0 NA promoter-TSS (ENSMUSG00000096146.2) protein_coding-promoter-TSS (ENSMUSG00000096146.2) -505 ENSMUSG00000096146.2 ENSMUSG00000096146 ENSMUST00000209291 Kcnj11 protein_coding Interval_157623 chr8 71788895 71789812 + 0 NA Intergenic Intergenic -8031 ENSMUSG00000110462.1 ENSMUSG00000110462 ENSMUST00000212427 Gm35572 lincRNA Interval_89492 chr2 21028601 21028813 + 0 NA Intergenic Intergenic 59653 ENSMUSG00000075514.4 ENSMUSG00000075514 ENSMUST00000126967 Gm13375 antisense Interval_106988 chr3 102604760 102606580 + 0 NA Intergenic Intergenic 6297 ENSMUSG00000104619.1 ENSMUSG00000104619 ENSMUST00000197163 Gm42678 lincRNA Interval_117529 chr4 124396304 124398769 + 0 NA Intergenic Intergenic 53749 ENSMUSG00000084757.7 ENSMUSG00000084757 ENSMUST00000156566 1700057H15Rik lincRNA Interval_163192 chr9 17667563 17668042 + 0 NA Intergenic Intergenic -51261 ENSMUSG00000111506.1 ENSMUSG00000111506 ENSMUST00000216550 Gm48848 processed_pseudogene Interval_119349 chr4 137068860 137069773 + 0 NA Intergenic Intergenic 43632 ENSMUSG00000077624.1 ENSMUSG00000077624 ENSMUST00000104436 Gm23834 snoRNA Interval_4534 chr1 74833351 74833881 + 0 NA Intergenic Intergenic -17279 ENSMUSG00000089964.1 ENSMUSG00000089964 ENSMUST00000159627 Gm16582 processed_transcript Interval_129998 chr5 123618685 123619185 + 0 NA intron (ENSMUSG00000049550.17, intron 13 of 13) protein_coding-intron (ENSMUSG00000049550.17, intron 14 of 24) -9266 ENSMUSG00000084552.1 ENSMUSG00000084552 ENSMUST00000122603 Gm24840 snRNA Interval_77564 chr17 91668795 91669077 + 0 NA TTS (ENSMUSG00000081412.1) processed_pseudogene-TTS (ENSMUSG00000081412.1) 1857 ENSMUSG00000081412.1 ENSMUSG00000081412 ENSMUST00000119343 Gm15403 processed_pseudogene Interval_110459 chr3 158528571 158529635 + 0 NA intron (ENSMUSG00000028176.13, intron 1 of 24) protein_coding-intron (ENSMUSG00000028176.13, intron 1 of 27) 33031 ENSMUSG00000028176.13 ENSMUSG00000028176 ENSMUST00000198284 Lrrc7 protein_coding Interval_93025 chr2 69645203 69645935 + 0 NA Intergenic Intergenic -1661 ENSMUSG00000063145.10 ENSMUSG00000063145 ENSMUST00000127806 Bbs5 protein_coding Interval_166782 chr9 62622119 62622525 + 0 NA Intergenic Intergenic -55538 ENSMUSG00000032243.8 ENSMUSG00000032243 ENSMUST00000159012 Itga11 protein_coding Interval_1148 chr1 16151006 16151477 + 0 NA Intergenic Intergenic 20739 ENSMUSG00000025921.7 ENSMUSG00000025921 ENSMUST00000152626 Rdh10 protein_coding Interval_92238 chr2 57263212 57263422 + 0 NA intron (ENSMUSG00000026827.12, intron 1 of 5) protein_coding-intron (ENSMUSG00000026827.12, intron 1 of 16) 12369 ENSMUSG00000084292.1 ENSMUSG00000084292 ENSMUST00000118714 Gm13535 processed_pseudogene Interval_76907 chr17 84877968 84879597 + 0 NA Intergenic Intergenic 23787 ENSMUSG00000117451.1 ENSMUSG00000117451 ENSMUST00000234338 Gm49982 processed_pseudogene Interval_66305 chr16 33032994 33033210 + 0 NA intron (ENSMUSG00000035578.16, intron 4 of 7) processed_transcript-intron (ENSMUSG00000078489.2, intron 1 of 1) 16768 ENSMUSG00000035578.16 ENSMUSG00000035578 ENSMUST00000126793 Iqcg protein_coding Interval_50559 chr14 15372103 15372552 + 0 NA intron (ENSMUSG00000045201.6, intron 1 of 1) protein_coding-intron (ENSMUSG00000045201.6, intron 1 of 1) -63887 ENSMUSG00000114789.1 ENSMUSG00000114789 ENSMUST00000224606 Gm31577 lincRNA Interval_137534 chr6 72931588 72931933 + 0 NA Intergenic Intergenic -21476 ENSMUSG00000097569.2 ENSMUSG00000097569 ENSMUST00000180809 Gm26640 lincRNA Interval_20471 chr10 117801387 117801691 + 0 NA Intergenic Intergenic -2774 ENSMUSG00000112525.1 ENSMUSG00000112525 ENSMUST00000219949 Gm47899 processed_pseudogene Interval_129018 chr5 116776638 116777440 + 0 NA intron (ENSMUSG00000106909.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000106909.1, intron 1 of 2) -34192 ENSMUSG00000107237.1 ENSMUSG00000107237 ENSMUST00000201443 Gm29926 lincRNA Interval_164515 chr9 37625669 37625897 + 0 NA intron (ENSMUSG00000001942.8, intron 3 of 6) protein_coding-intron (ENSMUSG00000001942.8, intron 2 of 8) 11956 ENSMUSG00000001942.8 ENSMUSG00000001942 ENSMUST00000213964 Siae protein_coding Interval_124893 chr5 59756130 59756395 + 0 NA Intergenic Intergenic -21650 ENSMUSG00000104889.1 ENSMUSG00000104889 ENSMUST00000196579 Gm43043 processed_pseudogene Interval_29938 chr11 87898297 87899099 + 0 NA Intergenic Intergenic -1458 ENSMUSG00000093920.2 ENSMUSG00000093920 ENSMUST00000081417 Olfr463 protein_coding Interval_147827 chr7 73852183 73854368 + 0 NA Intergenic Intergenic 33685 ENSMUSG00000105381.1 ENSMUSG00000105381 ENSMUST00000199151 Mir7234 miRNA Interval_99541 chr2 163051591 163053085 + 0 NA Intergenic Intergenic -15752 ENSMUSG00000099091.1 ENSMUSG00000099091 ENSMUST00000184607 Mir7003 miRNA Interval_140201 chr6 115498892 115500370 + 0 NA Intergenic Intergenic -34641 ENSMUSG00000108141.1 ENSMUSG00000108141 ENSMUST00000204889 Gm44079 antisense Interval_30646 chr11 95666247 95668321 + 0 NA intron (ENSMUSG00000038845.11, intron 1 of 6) protein_coding-intron (ENSMUSG00000038845.11, intron 1 of 6) 274 ENSMUSG00000038845.11 ENSMUSG00000038845 ENSMUST00000123001 Phb protein_coding Interval_125722 chr5 73576580 73576943 + 0 NA Intergenic Intergenic 53551 ENSMUSG00000067206.3 ENSMUSG00000067206 ENSMUST00000152215 Lrrc66 protein_coding Interval_36392 chr12 43208681 43208993 + 0 NA Intergenic Intergenic -97306 ENSMUSG00000112904.1 ENSMUSG00000112904 ENSMUST00000217732 Gm47030 lincRNA Interval_12319 chr1 191666199 191666866 + 0 NA Intergenic Intergenic -51495 ENSMUSG00000026623.16 ENSMUSG00000026623 ENSMUST00000130876 Lpgat1 protein_coding Interval_85236 chr19 24091757 24092328 + 0 NA Intergenic Intergenic 27249 ENSMUSG00000096796.1 ENSMUSG00000096796 ENSMUST00000178667 1700021P04Rik lincRNA Interval_12094 chr1 189701124 189701398 + 0 NA Intergenic Intergenic 15933 ENSMUSG00000103374.1 ENSMUSG00000103374 ENSMUST00000193510 Gm37239 processed_pseudogene Interval_130366 chr5 126741015 126741433 + 0 NA Intergenic Intergenic -13940 ENSMUSG00000106235.1 ENSMUSG00000106235 ENSMUST00000200003 Gm33347 lincRNA Interval_12091 chr1 189687730 189688569 + 0 NA promoter-TSS (ENSMUSG00000026605.14) protein_coding-promoter-TSS (ENSMUSG00000026605.14) 2821 ENSMUSG00000103374.1 ENSMUSG00000103374 ENSMUST00000193510 Gm37239 processed_pseudogene Interval_165299 chr9 46116131 46116344 + 0 NA intron (ENSMUSG00000034135.15, intron 1 of 24) protein_coding-intron (ENSMUSG00000034135.15, intron 1 of 22) -6893 ENSMUSG00000034135.15 ENSMUSG00000034135 ENSMUST00000138338 Sik3 protein_coding Interval_123633 chr5 34014612 34014885 + 0 NA intron (ENSMUSG00000045102.12, intron 20 of 24) protein_coding-intron (ENSMUSG00000045102.12, intron 20 of 24) -1186 ENSMUSG00000045102.12 ENSMUSG00000045102 ENSMUST00000202076 Poln protein_coding Interval_32603 chr11 109076716 109077446 + 0 NA Intergenic Intergenic -9991 ENSMUSG00000064691.1 ENSMUSG00000064691 ENSMUST00000082757 Gm24149 snRNA Interval_97693 chr2 142863945 142864198 + 0 NA intron (ENSMUSG00000038844.10, intron 2 of 26) protein_coding-intron (ENSMUSG00000038844.10, intron 2 of 25) 37448 ENSMUSG00000038844.10 ENSMUSG00000038844 ENSMUST00000212106 Kif16b protein_coding Interval_162339 chr8 127262304 127262637 + 0 NA intron (ENSMUSG00000025812.18, intron 1 of 1) protein_coding-intron (ENSMUSG00000025812.18, intron 2 of 23) 91066 ENSMUSG00000025812.18 ENSMUSG00000025812 ENSMUST00000159940 Pard3 protein_coding Interval_90951 chr2 33665401 33667514 + 0 NA Intergenic Intergenic -13659 ENSMUSG00000081244.3 ENSMUSG00000081244 ENSMUST00000121118 Gm13529 processed_pseudogene Interval_102166 chr3 19094930 19095255 + 0 NA Intergenic Intergenic 48807 ENSMUSG00000103135.1 ENSMUSG00000103135 ENSMUST00000193065 Gm37979 TEC Interval_118696 chr4 133229382 133229982 + 0 NA Intergenic Intergenic 16776 ENSMUSG00000028865.14 ENSMUSG00000028865 ENSMUST00000134713 Cd164l2 protein_coding Interval_114592 chr4 82849128 82849493 + 0 NA intron (ENSMUSG00000028403.15, intron 2 of 7) protein_coding-intron (ENSMUSG00000028403.15, intron 2 of 8) 10251 ENSMUSG00000028403.15 ENSMUSG00000028403 ENSMUST00000156055 Zdhhc21 protein_coding Interval_109553 chr3 144421313 144421584 + 0 NA Intergenic Intergenic 6224 ENSMUSG00000106416.1 ENSMUSG00000106416 ENSMUST00000198953 Gm5857 processed_pseudogene Interval_120273 chr4 145104663 145105507 + 0 NA intron (ENSMUSG00000020220.16, intron 21 of 51) protein_coding-intron (ENSMUSG00000020220.16, intron 38 of 67) 50401 ENSMUSG00000020220.16 ENSMUSG00000020220 ENSMUST00000132700 Vps13d protein_coding Interval_49095 chr13 107934129 107935659 + 0 NA Intergenic Intergenic -44830 ENSMUSG00000032846.10 ENSMUSG00000032846 ENSMUST00000224719 Zswim6 protein_coding Interval_158208 chr8 79788235 79788566 + 0 NA Intergenic Intergenic 15211 ENSMUSG00000110048.1 ENSMUSG00000110048 ENSMUST00000209386 Gm45433 processed_pseudogene Interval_104208 chr3 60570563 60570803 + 0 NA intron (ENSMUSG00000027763.13, intron 2 of 3) protein_coding-intron (ENSMUSG00000027763.13, intron 2 of 9) -33701 ENSMUSG00000104125.1 ENSMUSG00000104125 ENSMUST00000195434 Gm37488 TEC Interval_47455 chr13 84489315 84491475 + 0 NA Intergenic Intergenic -150282 ENSMUSG00000098245.1 ENSMUSG00000098245 ENSMUST00000182385 Gm26927 processed_pseudogene Interval_146698 chr7 49511186 49511814 + 0 NA intron (ENSMUSG00000052512.17, intron 11 of 38) protein_coding-intron (ENSMUSG00000052512.17, intron 11 of 37) 41788 ENSMUSG00000102148.1 ENSMUSG00000102148 ENSMUST00000193746 Gm38059 TEC Interval_111066 chr4 11590509 11591303 + 0 NA intron (ENSMUSG00000078773.11, intron 4 of 4) protein_coding-intron (ENSMUSG00000078773.11, intron 3 of 14) 11241 ENSMUSG00000094595.1 ENSMUSG00000094595 ENSMUST00000180239 Fsbp protein_coding Interval_54750 chr14 74731773 74732907 + 0 NA promoter-TSS (ENSMUSG00000021996.16) protein_coding-promoter-TSS (ENSMUSG00000021996.16) 21 ENSMUSG00000021996.16 ENSMUSG00000021996 ENSMUST00000176726 Esd protein_coding Interval_141542 chr6 129048497 129049981 + 0 NA promoter-TSS (ENSMUSG00000030154.10) protein_coding-promoter-TSS (ENSMUSG00000030154.10) -95 ENSMUSG00000030154.10 ENSMUSG00000030154 ENSMUST00000204784 Klrb1f protein_coding Interval_150952 chr7 116660868 116661188 + 0 NA Intergenic Intergenic 30457 ENSMUSG00000088234.1 ENSMUSG00000088234 ENSMUST00000157609 Gm25423 snRNA Interval_110191 chr3 154125399 154126305 + 0 NA intron (ENSMUSG00000028360.10, intron 1 of 21) protein_coding-intron (ENSMUSG00000028360.10, intron 1 of 21) -6488 ENSMUSG00000090114.1 ENSMUSG00000090114 ENSMUST00000161613 Gm3076 processed_pseudogene Interval_20728 chr10 120564575 120565156 + 0 NA Intergenic Intergenic -40672 ENSMUSG00000088924.1 ENSMUSG00000088924 ENSMUST00000158299 Gm24298 snoRNA Interval_123928 chr5 36605554 36606273 + 0 NA intron (ENSMUSG00000029190.19, intron 7 of 8) protein_coding-intron (ENSMUSG00000029190.19, intron 7 of 8) 7826 ENSMUSG00000106797.1 ENSMUSG00000106797 ENSMUST00000174019 Gm42936 processed_transcript Interval_74589 chr17 53566137 53568829 + 0 NA exon (ENSMUSG00000000708.14, exon 1 of 18) protein_coding-exon (ENSMUSG00000000708.14, exon 1 of 18) -28032 ENSMUSG00000044957.3 ENSMUSG00000044957 ENSMUST00000056198 Pp2d1 protein_coding Interval_173571 chrX 99574950 99576173 + 0 NA Intergenic Intergenic -104826 ENSMUSG00000034403.16 ENSMUSG00000034403 ENSMUST00000113797 Pja1 protein_coding Interval_140368 chr6 117399998 117400468 + 0 NA Intergenic Intergenic 23384 ENSMUSG00000107434.1 ENSMUSG00000107434 ENSMUST00000203927 Gm4640 lincRNA Interval_138262 chr6 86700964 86701239 + 0 NA intron (ENSMUSG00000001157.13, intron 11 of 13) protein_coding-intron (ENSMUSG00000001157.13, intron 11 of 13) -12673 ENSMUSG00000108197.1 ENSMUSG00000108197 ENSMUST00000204153 Gm44214 lincRNA Interval_11044 chr1 178811107 178811482 + 0 NA intron (ENSMUSG00000026494.12, intron 1 of 11) protein_coding-intron (ENSMUSG00000026494.12, intron 1 of 11) 55486 ENSMUSG00000102922.1 ENSMUSG00000102922 ENSMUST00000192621 Gm34176 processed_pseudogene Interval_118233 chr4 129681947 129682285 + 0 NA intron (ENSMUSG00000053730.15, intron 8 of 9) protein_coding-intron (ENSMUSG00000053730.15, intron 7 of 8) 2455 ENSMUSG00000098422.1 ENSMUSG00000098422 ENSMUST00000184308 Mir7016 miRNA Interval_110427 chr3 158008208 158010643 + 0 NA Intergenic Intergenic 20904 ENSMUSG00000039988.14 ENSMUSG00000039988 ENSMUST00000199574 Ankrd13c protein_coding Interval_141644 chr6 131755304 131755614 + 0 NA Intergenic Intergenic -65396 ENSMUSG00000063478.2 ENSMUSG00000063478 ENSMUST00000080619 Tas2r114 protein_coding Interval_65783 chr16 28833399 28833923 + 0 NA intron (ENSMUSG00000051065.9, intron 1 of 1) protein_coding-intron (ENSMUSG00000051065.9, intron 1 of 1) 2706 ENSMUSG00000051065.9 ENSMUSG00000051065 ENSMUST00000232571 Mb21d2 protein_coding Interval_119024 chr4 135055914 135056159 + 0 NA Intergenic Intergenic 64411 ENSMUSG00000086884.1 ENSMUSG00000086884 ENSMUST00000146152 Gm16225 lincRNA Interval_134976 chr6 34263900 34264286 + 0 NA Intergenic Intergenic -26172 ENSMUSG00000086762.1 ENSMUSG00000086762 ENSMUST00000138275 Gm14546 antisense Interval_100666 chr2 170912280 170913253 + 0 NA Intergenic Intergenic 42058 ENSMUSG00000080955.1 ENSMUSG00000080955 ENSMUST00000117955 Gm14263 processed_pseudogene Interval_120755 chr4 150473392 150473567 + 0 NA intron (ENSMUSG00000039852.17, intron 6 of 22) protein_coding-intron (ENSMUSG00000039852.17, intron 6 of 22) 95065 ENSMUSG00000085213.1 ENSMUSG00000085213 ENSMUST00000128800 Gm13091 antisense Interval_116038 chr4 107158297 107159941 + 0 NA intron (ENSMUSG00000028619.15, intron 2 of 3) protein_coding-intron (ENSMUSG00000028619.15, intron 3 of 4) 19089 ENSMUSG00000028619.15 ENSMUSG00000028619 ENSMUST00000131474 Tceanc2 protein_coding Interval_45804 chr13 58177865 58178668 + 0 NA intron (ENSMUSG00000005312.15, intron 3 of 3) protein_coding-intron (ENSMUSG00000005312.15, intron 10 of 10) 3359 ENSMUSG00000005312.15 ENSMUSG00000005312 ENSMUST00000225645 Ubqln1 protein_coding Interval_85535 chr19 28165511 28166644 + 0 NA Intergenic Intergenic -19774 ENSMUSG00000117862.1 ENSMUSG00000117862 ENSMUST00000236360 Gm35781 processed_pseudogene Interval_24981 chr11 42418784 42421688 + 0 NA intron (ENSMUSG00000007653.12, intron 1 of 2) protein_coding-intron (ENSMUSG00000007653.12, intron 1 of 9) -1114 ENSMUSG00000007653.12 ENSMUSG00000007653 ENSMUST00000192403 Gabrb2 protein_coding Interval_161123 chr8 117618034 117618735 + 0 NA intron (ENSMUSG00000034330.10, intron 30 of 32) protein_coding-intron (ENSMUSG00000034330.10, intron 30 of 32) 55305 ENSMUSG00000034308.13 ENSMUSG00000034308 ENSMUST00000174450 Sdr42e1 protein_coding Interval_110943 chr4 10678404 10678888 + 0 NA intron (ENSMUSG00000086080.7, intron 1 of 3) lincRNA-intron (ENSMUSG00000086080.7, intron 1 of 3) 97834 ENSMUSG00000081361.1 ENSMUSG00000081361 ENSMUST00000118586 Gm11813 processed_pseudogene Interval_57975 chr15 25815492 25815916 + 0 NA Intergenic Intergenic 24907 ENSMUSG00000115593.1 ENSMUSG00000115593 ENSMUST00000228649 Gm4824 processed_pseudogene Interval_115247 chr4 94844921 94845646 + 0 NA intron (ENSMUSG00000006386.15, intron 12 of 22) protein_coding-intron (ENSMUSG00000006386.15, intron 12 of 22) 40440 ENSMUSG00000006386.15 ENSMUSG00000006386 ENSMUST00000131958 Tek protein_coding Interval_16952 chr10 70104815 70105088 + 0 NA intron (ENSMUSG00000048701.13, intron 1 of 8) protein_coding-intron (ENSMUSG00000048701.13, intron 1 of 8) -70060 ENSMUSG00000048701.13 ENSMUSG00000048701 ENSMUST00000135607 Ccdc6 protein_coding Interval_82370 chr18 73201733 73202163 + 0 NA Intergenic Intergenic -280858 ENSMUSG00000118316.1 ENSMUSG00000118316 ENSMUST00000236243 Gm31908 lincRNA Interval_40755 chr12 108185630 108186100 + 0 NA intron (ENSMUSG00000021258.10, intron 2 of 11) protein_coding-intron (ENSMUSG00000021258.10, intron 1 of 10) -13220 ENSMUSG00000021258.10 ENSMUSG00000021258 ENSMUST00000223363 Ccnk protein_coding Interval_166078 chr9 56470329 56470762 + 0 NA intron (ENSMUSG00000032329.4, intron 2 of 7) protein_coding-intron (ENSMUSG00000032329.4, intron 2 of 9) 33088 ENSMUSG00000118653.1 ENSMUSG00000118653 ENSMUST00000239472 AC159819.1 protein_coding Interval_40485 chr12 105128691 105129774 + 0 NA Intergenic Intergenic -5964 ENSMUSG00000113051.1 ENSMUSG00000113051 ENSMUST00000222354 Gm47672 processed_pseudogene Interval_68807 chr16 87130773 87130999 + 0 NA Intergenic Intergenic -2447 ENSMUSG00000116979.1 ENSMUSG00000116979 ENSMUST00000232056 Gm32865 lincRNA Interval_100673 chr2 171220658 171221334 + 0 NA intron (ENSMUSG00000084829.7, intron 1 of 3) lincRNA-intron (ENSMUSG00000084829.7, intron 1 of 3) 5497 ENSMUSG00000084818.1 ENSMUSG00000084818 ENSMUST00000145800 Gm14640 lincRNA Interval_34081 chr11 120392744 120392995 + 0 NA intron (ENSMUSG00000039703.15, intron 12 of 15) protein_coding-intron (ENSMUSG00000039703.15, intron 12 of 16) -9366 ENSMUSG00000039703.15 ENSMUSG00000039703 ENSMUST00000136095 Nploc4 protein_coding Interval_1782 chr1 33755882 33758581 + 0 NA exon (ENSMUSG00000042215.8, exon 1 of 1) protein_coding-exon (ENSMUSG00000042215.8, exon 1 of 1) 496 ENSMUSG00000042215.8 ENSMUSG00000042215 ENSMUST00000189741 Bag2 protein_coding Interval_156302 chr8 47227495 47227815 + 0 NA promoter-TSS (ENSMUSG00000109606.1) TEC-promoter-TSS (ENSMUSG00000109606.1) -489 ENSMUSG00000109606.1 ENSMUSG00000109606 ENSMUST00000211539 Gm45537 TEC Interval_140164 chr6 114944535 114946107 + 0 NA intron (ENSMUSG00000030315.15, intron 2 of 5) protein_coding-intron (ENSMUSG00000030315.15, intron 2 of 4) -23505 ENSMUSG00000030315.15 ENSMUSG00000030315 ENSMUST00000204693 Vgll4 protein_coding Interval_7992 chr1 135104688 135106281 + 0 NA promoter-TSS (ENSMUSG00000042793.13) protein_coding-promoter-TSS (ENSMUSG00000042793.13) -3477 ENSMUSG00000097988.1 ENSMUSG00000097988 ENSMUST00000182275 Gm10535 antisense Interval_65070 chr16 18846170 18846883 + 0 NA intron (ENSMUSG00000099908.1, intron 2 of 23) protein_coding-intron (ENSMUSG00000099908.1, intron 2 of 23) 9942 ENSMUSG00000099908.1 ENSMUSG00000099908 ENSMUST00000190050 Gm28539 protein_coding Interval_109623 chr3 145412327 145412632 + 0 NA intron (ENSMUSG00000028197.4, intron 24 of 59) protein_coding-intron (ENSMUSG00000028197.4, intron 24 of 59) 5565 ENSMUSG00000105619.1 ENSMUSG00000105619 ENSMUST00000197919 9530034A14Rik antisense Interval_90063 chr2 27649687 27650770 + 0 NA Intergenic Intergenic -74991 ENSMUSG00000015846.15 ENSMUSG00000015846 ENSMUST00000148756 Rxra protein_coding Interval_118880 chr4 134232836 134233058 + 0 NA intron (ENSMUSG00000028841.14, intron 2 of 5) protein_coding-intron (ENSMUSG00000028841.14, intron 11 of 20) -2512 ENSMUSG00000028841.14 ENSMUSG00000028841 ENSMUST00000124181 Cnksr1 protein_coding Interval_49556 chr13 112938845 112939284 + 0 NA intron (ENSMUSG00000042426.6, intron 6 of 7) protein_coding-intron (ENSMUSG00000042426.6, intron 6 of 26) 1479 ENSMUSG00000114477.1 ENSMUSG00000114477 ENSMUST00000225929 Gm8795 processed_pseudogene Interval_129291 chr5 118713272 118714803 + 0 NA intron (ENSMUSG00000018076.12, intron 4 of 4) protein_coding-intron (ENSMUSG00000018076.12, intron 4 of 30) 6635 ENSMUSG00000107364.1 ENSMUSG00000107364 ENSMUST00000201096 Gm43051 TEC Interval_21371 chr10 128220637 128222193 + 0 NA Intergenic Intergenic -4423 ENSMUSG00000025389.7 ENSMUSG00000025389 ENSMUST00000026455 Mip protein_coding Interval_119659 chr4 139054572 139055004 + 0 NA intron (ENSMUSG00000041143.16, intron 16 of 16) protein_coding-intron (ENSMUSG00000041143.16, intron 15 of 15) 20782 ENSMUSG00000028747.10 ENSMUSG00000028747 ENSMUST00000068036 Htr6 protein_coding Interval_125602 chr5 72503039 72504598 + 0 NA intron (ENSMUSG00000005220.10, intron 1 of 20) protein_coding-intron (ENSMUSG00000005220.10, intron 1 of 21) 621 ENSMUSG00000005220.10 ENSMUSG00000005220 ENSMUST00000176439 Corin protein_coding Interval_50794 chr14 19878223 19879391 + 0 NA intron (ENSMUSG00000043004.13, intron 3 of 3) protein_coding-intron (ENSMUSG00000043004.13, intron 5 of 5) 11827 ENSMUSG00000114436.1 ENSMUSG00000114436 ENSMUST00000224546 Gm48283 lincRNA Interval_94127 chr2 84547749 84548064 + 0 NA Intergenic Intergenic -16584 ENSMUSG00000087362.7 ENSMUSG00000087362 ENSMUST00000139492 Gm13710 lincRNA Interval_100103 chr2 167087627 167088416 + 0 NA promoter-TSS (ENSMUSG00000081946.1) processed_pseudogene-promoter-TSS (ENSMUSG00000081946.1) -282 ENSMUSG00000081946.1 ENSMUSG00000081946 ENSMUST00000121305 Gm11472 processed_pseudogene Interval_57091 chr15 6034301 6034923 + 0 NA promoter-TSS (ENSMUSG00000115093.1) processed_pseudogene-promoter-TSS (ENSMUSG00000115093.1) -349 ENSMUSG00000115093.1 ENSMUSG00000115093 ENSMUST00000227373 Gm8047 processed_pseudogene Interval_100412 chr2 168881873 168882145 + 0 NA TTS (ENSMUSG00000077761.1) snoRNA-TTS (ENSMUSG00000077761.1) 159 ENSMUSG00000077761.1 ENSMUSG00000077761 ENSMUST00000104573 Gm25214 snoRNA Interval_121782 chr5 8082915 8083381 + 0 NA intron (ENSMUSG00000040537.17, intron 5 of 6) protein_coding-intron (ENSMUSG00000040537.17, intron 28 of 29) 21882 ENSMUSG00000003161.15 ENSMUSG00000003161 ENSMUST00000197065 Sri protein_coding Interval_112706 chr4 44259997 44260892 + 0 NA Intergenic Intergenic -39177 ENSMUSG00000092677.1 ENSMUSG00000092677 ENSMUST00000174936 Mir5106 miRNA Interval_57270 chr15 8260530 8261641 + 0 NA intron (ENSMUSG00000039801.7, intron 48 of 52) protein_coding-intron (ENSMUSG00000039801.7, intron 48 of 52) 37942 ENSMUSG00000039801.7 ENSMUSG00000039801 ENSMUST00000128772 Cplane1 protein_coding Interval_146311 chr7 45277138 45277803 + 0 NA promoter-TSS (ENSMUSG00000070568.12) protein_coding-promoter-TSS (ENSMUSG00000070568.12) -43 ENSMUSG00000070568.12 ENSMUSG00000070568 ENSMUST00000210733 Slc6a21 protein_coding Interval_122298 chr5 21016984 21018034 + 0 NA intron (ENSMUSG00000028771.13, intron 3 of 7) protein_coding-intron (ENSMUSG00000028771.13, intron 4 of 17) -14243 ENSMUSG00000106158.1 ENSMUSG00000106158 ENSMUST00000196295 Gm43216 TEC Interval_80631 chr18 44852785 44853150 + 0 NA intron (ENSMUSG00000034653.11, intron 12 of 29) protein_coding-intron (ENSMUSG00000034653.11, intron 12 of 29) -2268 ENSMUSG00000034653.11 ENSMUSG00000034653 ENSMUST00000202176 Ythdc2 protein_coding Interval_119021 chr4 135046579 135047463 + 0 NA Intergenic Intergenic 73426 ENSMUSG00000086884.1 ENSMUSG00000086884 ENSMUST00000146152 Gm16225 lincRNA Interval_79006 chr18 23890207 23890418 + 0 NA intron (ENSMUSG00000024277.14, intron 7 of 7) protein_coding-intron (ENSMUSG00000024277.14, intron 6 of 6) -53585 ENSMUSG00000117504.1 ENSMUSG00000117504 ENSMUST00000235052 Gm46611 processed_pseudogene Interval_141880 chr6 135083884 135084500 + 0 NA exon (ENSMUSG00000046733.7, exon 4 of 4) protein_coding-exon (ENSMUSG00000046733.7, exon 4 of 4) 18541 ENSMUSG00000046733.7 ENSMUSG00000046733 ENSMUST00000050104 Gprc5a protein_coding Interval_59128 chr15 44427342 44428678 + 0 NA promoter-TSS (ENSMUSG00000022338.8) protein_coding-promoter-TSS (ENSMUSG00000022338.8) -32 ENSMUSG00000022338.8 ENSMUSG00000022338 ENSMUST00000228372 Eny2 protein_coding Interval_114601 chr4 82981547 82981730 + 0 NA intron (ENSMUSG00000059049.14, intron 16 of 36) protein_coding-intron (ENSMUSG00000059049.14, intron 15 of 35) 70529 ENSMUSG00000059049.14 ENSMUSG00000059049 ENSMUST00000131102 Frem1 protein_coding Interval_142047 chr6 136740244 136740657 + 0 NA intron (ENSMUSG00000042638.14, intron 11 of 25) protein_coding-intron (ENSMUSG00000042638.14, intron 11 of 26) 41292 ENSMUSG00000042638.14 ENSMUSG00000042638 ENSMUST00000078095 Gucy2c protein_coding Interval_148517 chr7 82056701 82057289 + 0 NA Intergenic Intergenic -13392 ENSMUSG00000109145.1 ENSMUSG00000109145 ENSMUST00000208972 Gm20744 lincRNA Interval_146038 chr7 43411171 43411962 + 0 NA exon (ENSMUSG00000030468.12, exon 8 of 12) protein_coding-exon (ENSMUSG00000030468.12, exon 8 of 12) 3327 ENSMUSG00000030468.12 ENSMUSG00000030468 ENSMUST00000123042 Siglecg protein_coding Interval_106310 chr3 95290087 95291308 + 0 NA intron (ENSMUSG00000038712.16, intron 1 of 8) protein_coding-intron (ENSMUSG00000038712.16, intron 2 of 9) 2749 ENSMUSG00000038712.16 ENSMUSG00000038712 ENSMUST00000133762 Mindy1 protein_coding Interval_140711 chr6 120778090 120778529 + 0 NA intron (ENSMUSG00000004902.7, intron 1 of 9) protein_coding-intron (ENSMUSG00000004902.7, intron 1 of 9) 4731 ENSMUSG00000004902.7 ENSMUSG00000004902 ENSMUST00000112682 Slc25a18 protein_coding Interval_126781 chr5 92897501 92898696 + 0 NA exon (ENSMUSG00000029381.16, exon 1 of 10) protein_coding-exon (ENSMUSG00000029381.16, exon 1 of 10) 41627 ENSMUSG00000029381.16 ENSMUSG00000029381 ENSMUST00000172752 Shroom3 protein_coding Interval_92647 chr2 61935750 61935988 + 0 NA Intergenic Intergenic 34803 ENSMUSG00000083018.1 ENSMUSG00000083018 ENSMUST00000121668 Gm13555 processed_pseudogene Interval_171699 chr9 120233340 120234054 + 0 NA intron (ENSMUSG00000111360.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000111360.1, intron 1 of 2) -2944 ENSMUSG00000111360.1 ENSMUSG00000111360 ENSMUST00000216718 Gm38642 lincRNA Interval_172864 chrX 52320783 52321287 + 0 NA intron (ENSMUSG00000055653.13, intron 6 of 7) protein_coding-intron (ENSMUSG00000055653.13, intron 6 of 7) 24854 ENSMUSG00000086704.1 ENSMUSG00000086704 ENSMUST00000141697 Gm14582 antisense Interval_155901 chr8 40898614 40899674 + 0 NA TTS (ENSMUSG00000031596.15) protein_coding-TTS (ENSMUSG00000031596.15) -27068 ENSMUSG00000031595.9 ENSMUSG00000031595 ENSMUST00000034004 Pdgfrl protein_coding Interval_148449 chr7 81330933 81331509 + 0 NA intron (ENSMUSG00000025584.17, intron 20 of 21) protein_coding-intron (ENSMUSG00000025584.17, intron 20 of 21) 14006 ENSMUSG00000061787.15 ENSMUSG00000061787 ENSMUST00000138936 Rps17 protein_coding Interval_24814 chr11 39566248 39566472 + 0 NA Intergenic Intergenic 161352 ENSMUSG00000083806.1 ENSMUSG00000083806 ENSMUST00000117479 Gm12131 processed_pseudogene Interval_157516 chr8 71136160 71136393 + 0 NA Intergenic Intergenic 16934 ENSMUSG00000098594.1 ENSMUSG00000098594 ENSMUST00000184911 Gm27628 miRNA Interval_124114 chr5 38446006 38446433 + 0 NA intron (ENSMUSG00000005107.13, intron 5 of 13) protein_coding-intron (ENSMUSG00000005107.13, intron 4 of 10) 33963 ENSMUSG00000005107.13 ENSMUSG00000005107 ENSMUST00000156076 Slc2a9 protein_coding Interval_138148 chr6 85483742 85484907 + 0 NA exon (ENSMUSG00000047013.15, exon 2 of 13) protein_coding-exon (ENSMUSG00000047013.15, exon 2 of 13) 18534 ENSMUSG00000047013.15 ENSMUSG00000047013 ENSMUST00000161546 Fbxo41 protein_coding Interval_140495 chr6 118819081 118819782 + 0 NA intron (ENSMUSG00000051331.16, intron 3 of 47) protein_coding-intron (ENSMUSG00000051331.16, intron 3 of 46) -15469 ENSMUSG00000089115.1 ENSMUSG00000089115 ENSMUST00000158490 Gm25905 snRNA Interval_25900 chr11 52413958 52414525 + 0 NA Intergenic Intergenic 8925 ENSMUSG00000080951.1 ENSMUSG00000080951 ENSMUST00000122004 Gm12208 processed_pseudogene Interval_161239 chr8 119013876 119014254 + 0 NA intron (ENSMUSG00000031841.19, intron 6 of 7) protein_coding-intron (ENSMUSG00000031841.19, intron 6 of 13) -137400 ENSMUSG00000031841.19 ENSMUSG00000031841 ENSMUST00000151842 Cdh13 protein_coding Interval_85820 chr19 32155830 32157619 + 0 NA intron (ENSMUSG00000040451.18, intron 1 of 5) protein_coding-intron (ENSMUSG00000040451.18, intron 6 of 9) 52549 ENSMUSG00000118064.1 ENSMUSG00000118064 ENSMUST00000235377 Gm50210 sense_intronic Interval_82548 chr18 75075374 75076192 + 0 NA intron (ENSMUSG00000035765.10, intron 6 of 8) protein_coding-intron (ENSMUSG00000035765.10, intron 6 of 16) -49642 ENSMUSG00000035765.10 ENSMUSG00000035765 ENSMUST00000236840 Dym protein_coding Interval_107803 chr3 115566717 115567133 + 0 NA Intergenic Intergenic 48349 ENSMUSG00000105829.1 ENSMUSG00000105829 ENSMUST00000198229 Gm43669 processed_pseudogene Interval_162889 chr9 11651855 11652415 + 0 NA Intergenic Intergenic -67290 ENSMUSG00000111503.1 ENSMUSG00000111503 ENSMUST00000214628 Gm47034 lincRNA Interval_158115 chr8 78844779 78845143 + 0 NA Intergenic Intergenic 24907 ENSMUSG00000069986.4 ENSMUSG00000069986 ENSMUST00000093411 Gm8054 processed_pseudogene Interval_71807 chr17 26213404 26213880 + 0 NA exon (ENSMUSG00000024187.15, exon 13 of 13) protein_coding-exon (ENSMUSG00000024187.15, exon 13 of 13) -5856 ENSMUSG00000073433.11 ENSMUSG00000073433 ENSMUST00000155556 Arhgdig protein_coding Interval_125641 chr5 72981908 72982182 + 0 NA Intergenic Intergenic -7343 ENSMUSG00000063656.6 ENSMUSG00000063656 ENSMUST00000043711 Gm10135 protein_coding Interval_40904 chr12 109723985 109724507 + 0 NA promoter-TSS (ENSMUSG00000098807.2) miRNA-promoter-TSS (ENSMUSG00000098807.2) -67 ENSMUSG00000098807.2 ENSMUSG00000098807 ENSMUST00000083485 Mir300 miRNA Interval_89747 chr2 25195252 25197225 + 0 NA intron (ENSMUSG00000059555.6, intron 1 of 1) protein_coding-intron (ENSMUSG00000059555.6, intron 1 of 1) 521 ENSMUSG00000059555.6 ENSMUSG00000059555 ENSMUST00000137920 Tor4a protein_coding Interval_129040 chr5 117049380 117051085 + 0 NA Intergenic Intergenic -8580 ENSMUSG00000107327.1 ENSMUSG00000107327 ENSMUST00000201054 Gm7478 processed_pseudogene Interval_135809 chr6 47487959 47488460 + 0 NA intron (ENSMUSG00000029686.15, intron 2 of 3) protein_coding-intron (ENSMUSG00000029686.15, intron 2 of 21) -31487 ENSMUSG00000029686.15 ENSMUSG00000029686 ENSMUST00000149531 Cul1 protein_coding Interval_161804 chr8 122906289 122907451 + 0 NA exon (ENSMUSG00000035569.17, exon 3 of 3) protein_coding-exon (ENSMUSG00000035569.17, exon 3 of 3) 36321 ENSMUSG00000110440.1 ENSMUSG00000110440 ENSMUST00000212728 Gm45894 antisense Interval_150681 chr7 113278650 113281681 + 0 NA intron (ENSMUSG00000055116.8, intron 3 of 19) protein_coding-intron (ENSMUSG00000055116.8, intron 4 of 19) 15172 ENSMUSG00000109959.1 ENSMUSG00000109959 ENSMUST00000211342 Gm45355 antisense Interval_15306 chr10 44379722 44382150 + 0 NA Intergenic Intergenic 21260 ENSMUSG00000089260.1 ENSMUSG00000089260 ENSMUST00000158635 Mir1929 miRNA Interval_11121 chr1 179502787 179503055 + 0 NA intron (ENSMUSG00000055067.15, intron 1 of 11) protein_coding-intron (ENSMUSG00000055067.15, intron 1 of 5) 15084 ENSMUSG00000055067.15 ENSMUSG00000055067 ENSMUST00000194237 Smyd3 protein_coding Interval_82602 chr18 75386037 75386609 + 0 NA intron (ENSMUSG00000025880.11, intron 3 of 3) protein_coding-intron (ENSMUSG00000025880.11, intron 3 of 3) 17333 ENSMUSG00000025880.11 ENSMUSG00000025880 ENSMUST00000172718 Smad7 protein_coding Interval_10170 chr1 166314863 166315104 + 0 NA exon (ENSMUSG00000040612.13, exon 10 of 10) protein_coding-exon (ENSMUSG00000040612.13, exon 10 of 10) -5398 ENSMUSG00000091393.1 ENSMUSG00000091393 ENSMUST00000168347 5330438I03Rik antisense Interval_134270 chr6 24348040 24348636 + 0 NA Intergenic Intergenic 166729 ENSMUSG00000046192.4 ENSMUSG00000046192 ENSMUST00000052277 Iqub protein_coding Interval_30265 chr11 92451314 92452278 + 0 NA Intergenic Intergenic 319177 ENSMUSG00000081363.2 ENSMUSG00000081363 ENSMUST00000118237 Gm11500 processed_pseudogene Interval_42846 chr13 20297754 20298457 + 0 NA intron (ENSMUSG00000041112.17, intron 5 of 6) protein_coding-intron (ENSMUSG00000041112.17, intron 13 of 21) 15188 ENSMUSG00000041112.17 ENSMUSG00000041112 ENSMUST00000180767 Elmo1 protein_coding Interval_14852 chr10 40505616 40506035 + 0 NA Intergenic Intergenic -43067 ENSMUSG00000111251.1 ENSMUSG00000111251 ENSMUST00000214826 Gm18671 processed_pseudogene Interval_112443 chr4 41307188 41307841 + 0 NA intron (ENSMUSG00000028436.8, intron 2 of 8) protein_coding-intron (ENSMUSG00000028436.8, intron 2 of 8) 4356 ENSMUSG00000065873.1 ENSMUSG00000065873 ENSMUST00000083939 n-R5s183 rRNA Interval_170297 chr9 106769788 106770910 + 0 NA intron (ENSMUSG00000040661.6, intron 1 of 21) protein_coding-intron (ENSMUSG00000040661.6, intron 1 of 21) 18827 ENSMUSG00000040661.6 ENSMUSG00000040661 ENSMUST00000191300 Rad54l2 protein_coding Interval_314 chr1 3549048 3550114 + 0 NA intron (ENSMUSG00000051951.5, intron 1 of 2) protein_coding-intron (ENSMUSG00000051951.5, intron 1 of 2) 17786 ENSMUSG00000103147.1 ENSMUSG00000103147 ENSMUST00000192183 Gm7341 processed_pseudogene Interval_155927 chr8 41086565 41087199 + 0 NA intron (ENSMUSG00000045636.16, intron 1 of 1) protein_coding-intron (ENSMUSG00000045636.16, intron 1 of 13) 33772 ENSMUSG00000085672.1 ENSMUSG00000085672 ENSMUST00000125903 Gm16193 antisense Interval_10840 chr1 175897854 175898533 + 0 NA intron (ENSMUSG00000039748.11, intron 3 of 4) protein_coding-intron (ENSMUSG00000039748.11, intron 10 of 14) -6352 ENSMUSG00000094820.1 ENSMUSG00000094820 ENSMUST00000180129 Gm23805 snRNA Interval_34819 chr12 12219147 12219591 + 0 NA Intergenic Intergenic -42814 ENSMUSG00000020589.17 ENSMUSG00000020589 ENSMUST00000222357 Fam49a protein_coding Interval_23287 chr11 21178370 21178786 + 0 NA Intergenic Intergenic 19398 ENSMUSG00000088223.1 ENSMUSG00000088223 ENSMUST00000157598 Gm22600 misc_RNA Interval_63183 chr15 99606836 99607736 + 0 NA Intergenic Intergenic 5886 ENSMUSG00000043144.6 ENSMUSG00000043144 ENSMUST00000023754 Aqp6 protein_coding Interval_89394 chr2 20388349 20389144 + 0 NA intron (ENSMUSG00000036617.17, intron 2 of 3) protein_coding-intron (ENSMUSG00000036617.17, intron 3 of 7) 44188 ENSMUSG00000085477.7 ENSMUSG00000085477 ENSMUST00000149398 Gm13335 antisense Interval_173624 chrX 101221847 101223093 + 0 NA promoter-TSS (ENSMUSG00000046032.16) protein_coding-promoter-TSS (ENSMUSG00000046032.16) 83 ENSMUSG00000046032.16 ENSMUSG00000046032 ENSMUST00000130826 Snx12 protein_coding Interval_44231 chr13 42565680 42565886 + 0 NA Intergenic Intergenic -3680 ENSMUSG00000113367.1 ENSMUSG00000113367 ENSMUST00000222839 Gm47125 processed_pseudogene Interval_85119 chr19 23006305 23006966 + 0 NA intron (ENSMUSG00000097930.2, intron 1 of 1) lincRNA-intron (ENSMUSG00000097930.2, intron 1 of 1) -54819 ENSMUSG00000118155.1 ENSMUSG00000118155 ENSMUST00000235686 Gm50136 lincRNA Interval_3918 chr1 64764595 64765102 + 0 NA Intergenic Intergenic -27099 ENSMUSG00000045005.9 ENSMUSG00000045005 ENSMUST00000116133 Fzd5 protein_coding Interval_159779 chr8 102893739 102893923 + 0 NA Intergenic Intergenic -28033 ENSMUSG00000063696.7 ENSMUSG00000063696 ENSMUST00000076373 Gm8730 processed_pseudogene Interval_77254 chr17 87601095 87603655 + 0 NA Intergenic Intergenic -30721 ENSMUSG00000117414.1 ENSMUSG00000117414 ENSMUST00000234992 Gm46587 lincRNA Interval_16126 chr10 60876842 60877210 + 0 NA Intergenic Intergenic -45644 ENSMUSG00000020099.8 ENSMUSG00000020099 ENSMUST00000218637 Unc5b protein_coding Interval_49704 chr13 114114354 114114884 + 0 NA intron (ENSMUSG00000042348.10, intron 5 of 5) protein_coding-intron (ENSMUSG00000042348.10, intron 4 of 4) 5797 ENSMUSG00000114696.1 ENSMUSG00000114696 ENSMUST00000223997 Gm47479 TEC Interval_148384 chr7 80920516 80921693 + 0 NA exon (ENSMUSG00000025724.12, exon 4 of 4) protein_coding-exon (ENSMUSG00000025724.12, exon 4 of 4) -4774 ENSMUSG00000025724.12 ENSMUSG00000025724 ENSMUST00000136556 Sec11a protein_coding Interval_84178 chr19 8527917 8529063 + 0 NA intron (ENSMUSG00000110298.1, intron 2 of 6) transcribed_unprocessed_pseudogene-intron (ENSMUSG00000110298.1, intron 2 of 6) 13308 ENSMUSG00000110298.1 ENSMUSG00000110298 ENSMUST00000211159 Gm8189 transcribed_unprocessed_pseudogene Interval_129349 chr5 119373862 119375455 + 0 NA Intergenic Intergenic 77413 ENSMUSG00000084548.1 ENSMUSG00000084548 ENSMUST00000122599 n-R5s175 rRNA Interval_131458 chr5 137362855 137363560 + 0 NA exon (ENSMUSG00000029710.15, exon 8 of 17) protein_coding-exon (ENSMUSG00000029710.15, exon 8 of 17) 12777 ENSMUSG00000029710.15 ENSMUSG00000029710 ENSMUST00000111054 Ephb4 protein_coding Interval_153681 chr8 4515049 4516852 + 0 NA TTS (ENSMUSG00000008206.16) protein_coding-TTS (ENSMUSG00000008206.16) 6175 ENSMUSG00000102201.1 ENSMUSG00000102201 ENSMUST00000193830 Gm36956 TEC Interval_133293 chr5 151290371 151290679 + 0 NA intron (ENSMUSG00000107011.1, intron 2 of 5) protein_coding-intron (ENSMUSG00000107011.1, intron 2 of 5) 9402 ENSMUSG00000107154.1 ENSMUSG00000107154 ENSMUST00000201227 Gm7041 processed_pseudogene Interval_37676 chr12 71036663 71037442 + 0 NA intron (ENSMUSG00000048118.17, intron 5 of 14) protein_coding-intron (ENSMUSG00000048118.17, intron 5 of 23) -11289 ENSMUSG00000048118.17 ENSMUSG00000048118 ENSMUST00000135709 Arid4a protein_coding Interval_140154 chr6 114901364 114902090 + 0 NA intron (ENSMUSG00000030315.15, intron 2 of 5) protein_coding-intron (ENSMUSG00000030315.15, intron 1 of 4) 20089 ENSMUSG00000030315.15 ENSMUSG00000030315 ENSMUST00000204693 Vgll4 protein_coding Interval_40681 chr12 107056687 107056997 + 0 NA Intergenic Intergenic 42831 ENSMUSG00000085120.1 ENSMUSG00000085120 ENSMUST00000143652 Gm16086 lincRNA Interval_152226 chr7 130761876 130762952 + 0 NA TTS (ENSMUSG00000030852.18) protein_coding-TTS (ENSMUSG00000030852.18) -4539 ENSMUSG00000109104.1 ENSMUSG00000109104 ENSMUST00000208365 Gm6108 processed_pseudogene Interval_20555 chr10 118937124 118937356 + 0 NA Intergenic Intergenic -10097 ENSMUSG00000112854.1 ENSMUSG00000112854 ENSMUST00000219032 Gm38403 lincRNA Interval_46880 chr13 73070683 73070901 + 0 NA Intergenic Intergenic -162603 ENSMUSG00000113952.1 ENSMUSG00000113952 ENSMUST00000223231 Rpl31-ps2 processed_pseudogene Interval_37876 chr12 72742818 72743014 + 0 NA Intergenic Intergenic -1334 ENSMUSG00000112989.1 ENSMUSG00000112989 ENSMUST00000221318 Gm48143 processed_pseudogene Interval_63948 chr16 4710563 4711137 + 0 NA TTS (ENSMUSG00000063445.14) protein_coding-TTS (ENSMUSG00000063445.14) 8254 ENSMUSG00000063445.14 ENSMUSG00000063445 ENSMUST00000125140 Nmral1 protein_coding Interval_126629 chr5 91245950 91246608 + 0 NA Intergenic Intergenic -28275 ENSMUSG00000094938.1 ENSMUSG00000094938 ENSMUST00000178688 Gm23092 snRNA Interval_122171 chr5 18672265 18672699 + 0 NA Intergenic Intergenic -141722 ENSMUSG00000105930.1 ENSMUSG00000105930 ENSMUST00000198410 Gm17889 processed_pseudogene Interval_7929 chr1 134624874 134625218 + 0 NA TTS (ENSMUSG00000042207.17) protein_coding-TTS (ENSMUSG00000042207.17) 2246 ENSMUSG00000042207.17 ENSMUSG00000042207 ENSMUST00000191572 Kdm5b protein_coding Interval_4529 chr1 74806402 74809228 + 0 NA Intergenic Intergenic 14452 ENSMUSG00000026167.14 ENSMUSG00000026167 ENSMUST00000187238 Wnt10a protein_coding Interval_154507 chr8 18768879 18769653 + 0 NA intron (ENSMUSG00000039842.15, intron 12 of 13) protein_coding-intron (ENSMUSG00000039842.15, intron 12 of 13) -69719 ENSMUSG00000031465.6 ENSMUSG00000031465 ENSMUST00000170200 Angpt2 protein_coding Interval_102223 chr3 19611176 19611532 + 0 NA TTS (ENSMUSG00000027606.12) protein_coding-TTS (ENSMUSG00000027606.12) 17323 ENSMUSG00000082766.1 ENSMUSG00000082766 ENSMUST00000119133 1700064H15Rik protein_coding Interval_138690 chr6 91196678 91197158 + 0 NA Intergenic Intergenic 13126 ENSMUSG00000107397.1 ENSMUSG00000107397 ENSMUST00000203115 4930402H05Rik TEC Interval_173016 chrX 63043216 63043410 + 0 NA Intergenic Intergenic -8207 ENSMUSG00000082965.1 ENSMUSG00000082965 ENSMUST00000117124 Gm6754 processed_pseudogene Interval_136982 chr6 65453282 65454028 + 0 NA TTS (ENSMUSG00000029917.15) protein_coding-TTS (ENSMUSG00000029917.15) 21495 ENSMUSG00000107596.1 ENSMUSG00000107596 ENSMUST00000204311 Gm18913 processed_pseudogene Interval_128412 chr5 113187276 113188687 + 0 NA intron (ENSMUSG00000051339.10, intron 4 of 12) protein_coding-intron (ENSMUSG00000051339.10, intron 4 of 12) -21747 ENSMUSG00000106206.1 ENSMUSG00000106206 ENSMUST00000196549 Gm43094 TEC Interval_92659 chr2 62086295 62086965 + 0 NA intron (ENSMUSG00000026904.17, intron 1 of 26) protein_coding-intron (ENSMUSG00000026904.17, intron 1 of 24) -115958 ENSMUSG00000083018.1 ENSMUSG00000083018 ENSMUST00000121668 Gm13555 processed_pseudogene Interval_57394 chr15 10562066 10562930 + 0 NA promoter-TSS (ENSMUSG00000052482.6) processed_pseudogene-promoter-TSS (ENSMUSG00000052482.6) -974 ENSMUSG00000052482.6 ENSMUSG00000052482 ENSMUST00000064353 Gm8174 processed_pseudogene Interval_88100 chr19 59130762 59131039 + 0 NA Intergenic Intergenic 36080 ENSMUSG00000006270.7 ENSMUSG00000006270 ENSMUST00000173710 Vax1 protein_coding Interval_94686 chr2 93351264 93351451 + 0 NA Intergenic Intergenic 35472 ENSMUSG00000089073.1 ENSMUSG00000089073 ENSMUST00000158448 Gm23380 rRNA Interval_19049 chr10 94077269 94077724 + 0 NA intron (ENSMUSG00000020021.4, intron 2 of 2) protein_coding-intron (ENSMUSG00000020021.4, intron 3 of 20) 4954 ENSMUSG00000020021.4 ENSMUSG00000020021 ENSMUST00000125535 Fgd6 protein_coding Interval_160097 chr8 106405847 106406285 + 0 NA Intergenic Intergenic -9261 ENSMUSG00000031907.9 ENSMUSG00000031907 ENSMUST00000212874 Zfp90 protein_coding Interval_146793 chr7 51548147 51548625 + 0 NA intron (ENSMUSG00000055489.8, intron 6 of 20) protein_coding-intron (ENSMUSG00000055489.8, intron 7 of 21) 37279 ENSMUSG00000055489.8 ENSMUSG00000055489 ENSMUST00000207717 Ano5 protein_coding Interval_89540 chr2 22195065 22196040 + 0 NA Intergenic Intergenic -45505 ENSMUSG00000025716.14 ENSMUSG00000025716 ENSMUST00000149423 Myo3a protein_coding Interval_163190 chr9 17647156 17647916 + 0 NA Intergenic Intergenic -71527 ENSMUSG00000111506.1 ENSMUSG00000111506 ENSMUST00000216550 Gm48848 processed_pseudogene Interval_163101 chr9 15279430 15280671 + 0 NA promoter-TSS (ENSMUSG00000031935.9) protein_coding-promoter-TSS (ENSMUSG00000031935.9) -147 ENSMUSG00000031935.9 ENSMUSG00000031935 ENSMUST00000216406 Med17 protein_coding Interval_126251 chr5 84337025 84337377 + 0 NA intron (ENSMUSG00000029245.16, intron 2 of 3) protein_coding-intron (ENSMUSG00000029245.16, intron 2 of 15) 24865 ENSMUSG00000029245.16 ENSMUSG00000029245 ENSMUST00000200076 Epha5 protein_coding Interval_170878 chr9 111486192 111487653 + 0 NA intron (ENSMUSG00000032500.10, intron 4 of 4) protein_coding-intron (ENSMUSG00000032500.10, intron 4 of 4) 47841 ENSMUSG00000032500.10 ENSMUSG00000032500 ENSMUST00000111879 Dclk3 protein_coding Interval_5690 chr1 90944952 90945477 + 0 NA intron (ENSMUSG00000026303.6, intron 14 of 15) protein_coding-intron (ENSMUSG00000026303.6, intron 14 of 15) 6045 ENSMUSG00000026303.6 ENSMUSG00000026303 ENSMUST00000136220 Mlph protein_coding Interval_13290 chr10 14200337 14201389 + 0 NA intron (ENSMUSG00000112266.1, intron 3 of 3) lincRNA-intron (ENSMUSG00000112266.1, intron 3 of 3) 3848 ENSMUSG00000112266.1 ENSMUSG00000112266 ENSMUST00000218190 Gm48843 lincRNA Interval_125530 chr5 69168025 69168328 + 0 NA TTS (ENSMUSG00000107208.1) TEC-TTS (ENSMUSG00000107208.1) 2072 ENSMUSG00000107208.1 ENSMUSG00000107208 ENSMUST00000201492 D130004A15Rik TEC Interval_115361 chr4 98106678 98107292 + 0 NA intron (ENSMUSG00000028565.18, intron 6 of 6) protein_coding-intron (ENSMUSG00000028565.18, intron 9 of 9) 43276 ENSMUSG00000081096.2 ENSMUSG00000081096 ENSMUST00000120186 Gm12691 transcribed_processed_pseudogene Interval_93094 chr2 70064193 70065076 + 0 NA intron (ENSMUSG00000042064.13, intron 2 of 34) protein_coding-intron (ENSMUSG00000042064.13, intron 2 of 34) -18440 ENSMUSG00000042064.13 ENSMUSG00000042064 ENSMUST00000112241 Myo3b protein_coding Interval_167897 chr9 73788832 73789020 + 0 NA intron (ENSMUSG00000062151.13, intron 4 of 32) protein_coding-intron (ENSMUSG00000062151.13, intron 3 of 31) 6331 ENSMUSG00000084426.1 ENSMUSG00000084426 ENSMUST00000122477 Gm25105 snoRNA Interval_158494 chr8 84044101 84045143 + 0 NA intron (ENSMUSG00000045232.4, intron 1 of 1) protein_coding-intron (ENSMUSG00000045232.4, intron 1 of 1) 378 ENSMUSG00000045232.4 ENSMUSG00000045232 ENSMUST00000061923 Rln3 protein_coding Interval_79768 chr18 35027049 35027765 + 0 NA intron (ENSMUSG00000118380.1, intron 3 of 3) processed_transcript-intron (ENSMUSG00000118380.1, intron 4 of 5) 44437 ENSMUSG00000118380.1 ENSMUSG00000118380 ENSMUST00000238090 Gm36037 processed_transcript Interval_151954 chr7 127753269 127754003 + 0 NA intron (ENSMUSG00000030811.14, intron 6 of 9) protein_coding-intron (ENSMUSG00000030811.14, intron 7 of 10) 5362 ENSMUSG00000030811.14 ENSMUSG00000030811 ENSMUST00000206893 Fbxl19 protein_coding Interval_10617 chr1 172242369 172242875 + 0 NA intron (ENSMUSG00000007107.6, intron 11 of 22) protein_coding-intron (ENSMUSG00000007107.6, intron 11 of 22) 5331 ENSMUSG00000103617.1 ENSMUSG00000103617 ENSMUST00000191616 Gm37950 antisense Interval_125281 chr5 65918401 65919521 + 0 NA Intergenic Intergenic 7337 ENSMUSG00000107254.1 ENSMUSG00000107254 ENSMUST00000201871 Gm43769 TEC Interval_21003 chr10 123155010 123155869 + 0 NA intron (ENSMUSG00000020124.10, intron 5 of 5) protein_coding-intron (ENSMUSG00000020124.10, intron 6 of 20) 23245 ENSMUSG00000112879.1 ENSMUSG00000112879 ENSMUST00000219693 Gm47726 processed_pseudogene Interval_102386 chr3 23144975 23145316 + 0 NA Intergenic Intergenic 59170 ENSMUSG00000103607.1 ENSMUSG00000103607 ENSMUST00000195835 Gm37021 lincRNA Interval_43246 chr13 26978888 26979240 + 0 NA intron (ENSMUSG00000114646.1, intron 1 of 1) antisense-intron (ENSMUSG00000114646.1, intron 1 of 1) -78510 ENSMUSG00000021342.14 ENSMUSG00000021342 ENSMUST00000018061 Prl protein_coding Interval_37068 chr12 57281064 57281819 + 0 NA promoter-TSS (ENSMUSG00000047022.18) protein_coding-promoter-TSS (ENSMUSG00000047022.18) -8129 ENSMUSG00000078982.3 ENSMUSG00000078982 ENSMUST00000140773 Gm11025 processed_pseudogene Interval_86971 chr19 45262938 45263480 + 0 NA Intergenic Intergenic -27397 ENSMUSG00000025216.9 ENSMUSG00000025216 ENSMUST00000099401 Lbx1 protein_coding Interval_152783 chr7 137486386 137486755 + 0 NA Intergenic Intergenic 48905 ENSMUSG00000031068.8 ENSMUSG00000031068 ENSMUST00000211598 Glrx3 protein_coding Interval_26723 chr11 60016187 60016935 + 0 NA intron (ENSMUSG00000000301.16, intron 1 of 3) protein_coding-intron (ENSMUSG00000000301.16, intron 2 of 6) -45051 ENSMUSG00000000301.16 ENSMUSG00000000301 ENSMUST00000133028 Pemt protein_coding Interval_4520 chr1 74778933 74779437 + 0 NA intron (ENSMUSG00000033227.7, intron 1 of 3) protein_coding-intron (ENSMUSG00000033227.7, intron 1 of 3) -1780 ENSMUSG00000099472.1 ENSMUSG00000099472 ENSMUST00000188031 Gm29539 antisense Interval_54640 chr14 72594077 72594310 + 0 NA intron (ENSMUSG00000033487.14, intron 2 of 23) protein_coding-intron (ENSMUSG00000033487.14, intron 4 of 25) 4441 ENSMUSG00000090216.1 ENSMUSG00000090216 ENSMUST00000160445 Gm16549 antisense Interval_45929 chr13 59365375 59366741 + 0 NA Intergenic Intergenic -35815 ENSMUSG00000114240.1 ENSMUSG00000114240 ENSMUST00000224237 Gm47360 lincRNA Interval_10118 chr1 165896256 165897549 + 0 NA intron (ENSMUSG00000026565.18, intron 10 of 16) protein_coding-intron (ENSMUSG00000026565.18, intron 9 of 14) -16742 ENSMUSG00000026565.18 ENSMUSG00000026565 ENSMUST00000176800 Pou2f1 protein_coding Interval_46373 chr13 64312126 64313125 + 0 NA promoter-TSS (ENSMUSG00000021482.10) protein_coding-promoter-TSS (ENSMUSG00000021482.10) 85 ENSMUSG00000021482.10 ENSMUSG00000021482 ENSMUST00000021938 Prxl2c protein_coding Interval_122505 chr5 23473331 23474092 + 0 NA intron (ENSMUSG00000029004.15, intron 7 of 12) protein_coding-intron (ENSMUSG00000029004.15, intron 7 of 25) -4844 ENSMUSG00000029004.15 ENSMUSG00000029004 ENSMUST00000194010 Kmt2e protein_coding Interval_147454 chr7 67417463 67418479 + 0 NA Intergenic Intergenic 25962 ENSMUSG00000109329.1 ENSMUSG00000109329 ENSMUST00000208755 Gm33926 lincRNA Interval_167077 chr9 65100854 65103421 + 0 NA intron (ENSMUSG00000032816.15, intron 1 of 3) protein_coding-intron (ENSMUSG00000032816.15, intron 1 of 19) 642 ENSMUSG00000032816.15 ENSMUSG00000032816 ENSMUST00000166273 Igdcc4 protein_coding Interval_150688 chr7 113347407 113347814 + 0 NA promoter-TSS (ENSMUSG00000038187.14) protein_coding-promoter-TSS (ENSMUSG00000038187.14) -16301 ENSMUSG00000038187.14 ENSMUSG00000038187 ENSMUST00000129567 Btbd10 protein_coding Interval_157264 chr8 68793498 68794676 + 0 NA promoter-TSS (ENSMUSG00000031864.16) protein_coding-promoter-TSS (ENSMUSG00000031864.16) -4780 ENSMUSG00000081745.1 ENSMUSG00000081745 ENSMUST00000121595 Gm15549 processed_pseudogene Interval_150411 chr7 110237123 110238516 + 0 NA intron (ENSMUSG00000031015.8, intron 1 of 4) protein_coding-intron (ENSMUSG00000031015.8, intron 1 of 11) 16087 ENSMUSG00000031015.8 ENSMUSG00000031015 ENSMUST00000210513 Swap70 protein_coding Interval_129388 chr5 119669870 119671509 + 0 NA promoter-TSS (ENSMUSG00000018604.18) protein_coding-promoter-TSS (ENSMUSG00000018604.18) 20 ENSMUSG00000018604.18 ENSMUSG00000018604 ENSMUST00000154680 Tbx3 protein_coding Interval_152819 chr7 138326732 138327104 + 0 NA intron (ENSMUSG00000091002.2, intron 4 of 6) protein_coding-intron (ENSMUSG00000091002.2, intron 4 of 11) 70812 ENSMUSG00000091002.2 ENSMUSG00000091002 ENSMUST00000162222 Tcerg1l protein_coding Interval_45591 chr13 56115212 56116804 + 0 NA intron (ENSMUSG00000015937.15, intron 2 of 3) protein_coding-intron (ENSMUSG00000015937.15, intron 2 of 8) 20353 ENSMUSG00000015937.15 ENSMUSG00000015937 ENSMUST00000154564 Macroh2a1 protein_coding Interval_139734 chr6 108236052 108236665 + 0 NA intron (ENSMUSG00000030102.11, intron 2 of 61) protein_coding-intron (ENSMUSG00000030102.11, intron 2 of 61) -50802 ENSMUSG00000030101.15 ENSMUSG00000030101 ENSMUST00000171697 Sumf1 protein_coding Interval_77832 chr18 4304557 4305119 + 0 NA Intergenic Intergenic -10356 ENSMUSG00000117482.1 ENSMUSG00000117482 ENSMUST00000234061 Gm7400 processed_pseudogene Interval_27772 chr11 69891045 69891409 + 0 NA promoter-TSS (ENSMUSG00000001588.12) protein_coding-promoter-TSS (ENSMUSG00000001588.12) -736 ENSMUSG00000001588.12 ENSMUSG00000001588 ENSMUST00000148037 Acap1 protein_coding Interval_96228 chr2 120719887 120720238 + 0 NA intron (ENSMUSG00000027284.16, intron 39 of 40) protein_coding-intron (ENSMUSG00000027284.16, intron 26 of 27) 8576 ENSMUSG00000027284.16 ENSMUSG00000027284 ENSMUST00000136725 Cdan1 protein_coding Interval_107346 chr3 106066367 106066566 + 0 NA Intergenic Intergenic -23035 ENSMUSG00000105277.1 ENSMUSG00000105277 ENSMUST00000196322 Gm9504 processed_pseudogene Interval_95401 chr2 108311588 108312287 + 0 NA Intergenic Intergenic -20618 ENSMUSG00000086758.1 ENSMUSG00000086758 ENSMUST00000156541 Gm13912 lincRNA Interval_119589 chr4 138546895 138548587 + 0 NA Intergenic Intergenic 39988 ENSMUSG00000088589.1 ENSMUSG00000088589 ENSMUST00000157964 Gm22961 snRNA Interval_137413 chr6 72026794 72027007 + 0 NA intron (ENSMUSG00000108356.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000108356.1, intron 1 of 2) 15628 ENSMUSG00000108356.1 ENSMUSG00000108356 ENSMUST00000206867 9130221F21Rik lincRNA Interval_73525 chr17 39106640 39107708 + 0 NA Intergenic Intergenic -6213 ENSMUSG00000117207.1 ENSMUSG00000117207 ENSMUST00000233956 Gm18784 processed_pseudogene Interval_133935 chr6 15791767 15791995 + 0 NA intron (ENSMUSG00000041390.18, intron 4 of 4) protein_coding-intron (ENSMUSG00000041390.18, intron 4 of 4) -19442 ENSMUSG00000108046.1 ENSMUSG00000108046 ENSMUST00000204851 Gm43924 TEC Interval_102168 chr3 19118831 19119032 + 0 NA Intergenic Intergenic 24968 ENSMUSG00000103135.1 ENSMUSG00000103135 ENSMUST00000193065 Gm37979 TEC Interval_109993 chr3 152356431 152357503 + 0 NA intron (ENSMUSG00000025437.15, intron 1 of 23) protein_coding-intron (ENSMUSG00000025437.15, intron 1 of 23) -9309 ENSMUSG00000025437.15 ENSMUSG00000025437 ENSMUST00000198596 Usp33 protein_coding Interval_171819 chr9 121433058 121433268 + 0 NA intron (ENSMUSG00000032536.12, intron 4 of 16) protein_coding-intron (ENSMUSG00000032536.12, intron 3 of 15) 61347 ENSMUSG00000032532.7 ENSMUSG00000032532 ENSMUST00000217581 Cck protein_coding Interval_73313 chr17 36148390 36149384 + 0 NA intron (ENSMUSG00000038311.13, intron 1 of 3) lincRNA-intron (ENSMUSG00000038311.13, intron 1 of 4) -3143 ENSMUSG00000073403.11 ENSMUSG00000073403 ENSMUST00000174094 Gm10499 transcribed_unprocessed_pseudogene Interval_18667 chr10 88949638 88950191 + 0 NA intron (ENSMUSG00000035189.17, intron 26 of 26) protein_coding-intron (ENSMUSG00000035189.17, intron 27 of 27) 63922 ENSMUSG00000020062.7 ENSMUSG00000020062 ENSMUST00000020255 Slc5a8 protein_coding Interval_50009 chr13 119687941 119688249 + 0 NA Intergenic Intergenic -2367 ENSMUSG00000093930.2 ENSMUSG00000093930 ENSMUST00000224188 Hmgcs1 protein_coding Interval_9616 chr1 160271183 160271445 + 0 NA intron (ENSMUSG00000104302.1, intron 2 of 4) protein_coding-intron (ENSMUSG00000026721.16, intron 19 of 20) 6990 ENSMUSG00000104302.1 ENSMUSG00000104302 ENSMUST00000194105 Gm36975 antisense Interval_74508 chr17 52550449 52550709 + 0 NA Intergenic Intergenic 52081 ENSMUSG00000098552.1 ENSMUSG00000098552 ENSMUST00000183438 Gm27217 antisense Interval_134344 chr6 25841606 25842246 + 0 NA Intergenic Intergenic -43909 ENSMUSG00000029676.15 ENSMUSG00000029676 ENSMUST00000147970 Pot1a protein_coding Interval_133561 chr6 6851339 6851525 + 0 NA intron (ENSMUSG00000090063.6, intron 2 of 2) antisense-intron (ENSMUSG00000090063.6, intron 2 of 2) 4819 ENSMUSG00000107967.1 ENSMUSG00000107967 ENSMUST00000204703 Gm44094 TEC Interval_127154 chr5 100671361 100671637 + 0 NA intron (ENSMUSG00000085269.1, intron 1 of 3) protein_coding-intron (ENSMUSG00000029319.8, intron 1 of 6) 640 ENSMUSG00000085269.1 ENSMUSG00000085269 ENSMUST00000123463 Gm15777 antisense Interval_117662 chr4 125419760 125420506 + 0 NA Intergenic Intergenic -70567 ENSMUSG00000001985.9 ENSMUSG00000001985 ENSMUST00000030676 Grik3 protein_coding Interval_134829 chr6 31933355 31934808 + 0 NA Intergenic Intergenic -116165 ENSMUSG00000029766.7 ENSMUSG00000029766 ENSMUST00000156267 1700012A03Rik protein_coding Interval_119095 chr4 135516714 135517704 + 0 NA intron (ENSMUSG00000028801.14, intron 3 of 3) protein_coding-intron (ENSMUSG00000028801.14, intron 4 of 8) -4730 ENSMUSG00000080474.1 ENSMUSG00000080474 ENSMUST00000116824 Gm25317 miRNA Interval_86122 chr19 36876878 36877100 + 0 NA intron (ENSMUSG00000024811.11, intron 18 of 26) protein_coding-intron (ENSMUSG00000024811.11, intron 18 of 26) 27618 ENSMUSG00000024811.11 ENSMUSG00000024811 ENSMUST00000168654 Tnks2 protein_coding Interval_4685 chr1 77081080 77082530 + 0 NA Intergenic Intergenic -54013 ENSMUSG00000100534.1 ENSMUSG00000100534 ENSMUST00000191156 Gm816 lincRNA Interval_83047 chr18 80751329 80751514 + 0 NA intron (ENSMUSG00000024566.10, intron 25 of 28) protein_coding-intron (ENSMUSG00000024566.10, intron 25 of 29) 8566 ENSMUSG00000024566.10 ENSMUSG00000024566 ENSMUST00000225345 Atp9b protein_coding Interval_155015 chr8 25698058 25699454 + 0 NA exon (ENSMUSG00000054823.16, exon 16 of 23) protein_coding-exon (ENSMUSG00000054823.16, exon 16 of 23) 6610 ENSMUSG00000109679.1 ENSMUSG00000109679 ENSMUST00000210903 Gm45342 TEC Interval_12056 chr1 189209229 189210916 + 0 NA TTS (ENSMUSG00000037624.15) protein_coding-TTS (ENSMUSG00000037624.15) 941 ENSMUSG00000103669.1 ENSMUSG00000103669 ENSMUST00000194444 2900042K21Rik sense_overlapping Interval_19384 chr10 98744265 98745071 + 0 NA Intergenic Intergenic -44958 ENSMUSG00000112647.1 ENSMUSG00000112647 ENSMUST00000217680 Gm5427 lincRNA Interval_24498 chr11 33749374 33750229 + 0 NA intron (ENSMUSG00000053519.17, intron 1 of 8) protein_coding-intron (ENSMUSG00000053519.17, intron 1 of 7) 44251 ENSMUSG00000087328.1 ENSMUSG00000087328 ENSMUST00000125068 Gm12120 antisense Interval_126923 chr5 97218333 97219084 + 0 NA Intergenic Intergenic 23122 ENSMUSG00000105850.1 ENSMUSG00000105850 ENSMUST00000199885 Gm2861 lincRNA Interval_159028 chr8 88944003 88944341 + 0 NA Intergenic Intergenic -80563 ENSMUSG00000099078.1 ENSMUSG00000099078 ENSMUST00000183771 Mir8110 miRNA Interval_2570 chr1 40547114 40547895 + 0 NA intron (ENSMUSG00000026068.11, intron 2 of 2) protein_coding-intron (ENSMUSG00000026068.11, intron 11 of 12) 32099 ENSMUSG00000026068.11 ENSMUSG00000026068 ENSMUST00000160468 Il18rap protein_coding Interval_80930 chr18 50399324 50400071 + 0 NA Intergenic Intergenic 121328 ENSMUSG00000035420.7 ENSMUSG00000035420 ENSMUST00000238078 Fam170a protein_coding Interval_157717 chr8 72491955 72493287 + 0 NA promoter-TSS (ENSMUSG00000019731.13) protein_coding-promoter-TSS (ENSMUSG00000019731.13) -7 ENSMUSG00000019731.13 ENSMUSG00000019731 ENSMUST00000141352 Slc35e1 protein_coding Interval_38346 chr12 77616243 77616582 + 0 NA Intergenic Intergenic 8597 ENSMUSG00000112003.1 ENSMUSG00000112003 ENSMUST00000219894 Gm4864 processed_pseudogene Interval_5735 chr1 91342542 91342807 + 0 NA exon (ENSMUSG00000049515.12, exon 8 of 9) protein_coding-exon (ENSMUSG00000049515.12, exon 8 of 9) -8342 ENSMUSG00000026308.8 ENSMUSG00000026308 ENSMUST00000027533 Klhl30 protein_coding Interval_126069 chr5 77211005 77211863 + 0 NA promoter-TSS (ENSMUSG00000053030.11) protein_coding-promoter-TSS (ENSMUSG00000053030.11) -229 ENSMUSG00000053030.11 ENSMUSG00000053030 ENSMUST00000121825 Spink2 protein_coding Interval_72948 chr17 33745515 33746856 + 0 NA TTS (ENSMUSG00000077450.13) protein_coding-TTS (ENSMUSG00000077450.13) -13807 ENSMUSG00000090952.2 ENSMUSG00000090952 ENSMUST00000170103 Gm17251 bidirectional_promoter_lncRNA Interval_30950 chr11 97376393 97376948 + 0 NA promoter-TSS (ENSMUSG00000038485.6) protein_coding-promoter-TSS (ENSMUSG00000038485.6) 14235 ENSMUSG00000038485.6 ENSMUSG00000038485 ENSMUST00000149212 Socs7 protein_coding Interval_36919 chr12 55337848 55339450 + 0 NA intron (ENSMUSG00000021023.14, intron 4 of 6) protein_coding-intron (ENSMUSG00000021023.14, intron 4 of 6) 39072 ENSMUSG00000021023.14 ENSMUSG00000021023 ENSMUST00000183654 Prorp protein_coding Interval_96848 chr2 128881056 128881842 + 0 NA intron (ENSMUSG00000027386.9, intron 4 of 8) protein_coding-intron (ENSMUSG00000027386.9, intron 3 of 7) 18468 ENSMUSG00000027386.9 ENSMUSG00000027386 ENSMUST00000028864 Fbln7 protein_coding Interval_73046 chr17 34381724 34382439 + 0 NA TTS (ENSMUSG00000062638.11) protein_coding-TTS (ENSMUSG00000062638.11) 4195 ENSMUSG00000062638.11 ENSMUSG00000062638 ENSMUST00000236230 Btnl1 protein_coding Interval_118163 chr4 129303465 129303929 + 0 NA intron (ENSMUSG00000001333.9, intron 2 of 2) protein_coding-intron (ENSMUSG00000001333.9, intron 2 of 4) 16066 ENSMUSG00000001333.9 ENSMUSG00000001333 ENSMUST00000146448 Sync protein_coding Interval_67828 chr16 57515142 57515345 + 0 NA exon (ENSMUSG00000043336.14, exon 5 of 5) protein_coding-exon (ENSMUSG00000043336.14, exon 5 of 5) 91621 ENSMUSG00000022748.8 ENSMUSG00000022748 ENSMUST00000232413 Cmss1 protein_coding Interval_9457 chr1 157325339 157325662 + 0 NA intron (ENSMUSG00000070565.11, intron 1 of 2) protein_coding-intron (ENSMUSG00000070565.11, intron 1 of 17) 24543 ENSMUSG00000102326.1 ENSMUSG00000102326 ENSMUST00000193958 Gm37788 TEC Interval_15331 chr10 44539079 44539618 + 0 NA Intergenic Intergenic -50580 ENSMUSG00000111730.1 ENSMUSG00000111730 ENSMUST00000213337 Gm5950 processed_pseudogene Interval_141598 chr6 130602329 130602894 + 0 NA Intergenic Intergenic -10929 ENSMUSG00000107519.1 ENSMUSG00000107519 ENSMUST00000204418 Gm26996 unprocessed_pseudogene Interval_103886 chr3 54487598 54488004 + 0 NA Intergenic Intergenic 6341 ENSMUSG00000069014.4 ENSMUSG00000069014 ENSMUST00000198699 Gm5641 transcribed_processed_pseudogene Interval_161336 chr8 119817325 119817947 + 0 NA intron (ENSMUSG00000031827.13, intron 1 of 1) protein_coding-intron (ENSMUSG00000031827.13, intron 3 of 3) 5081 ENSMUSG00000031827.13 ENSMUSG00000031827 ENSMUST00000212676 Cotl1 protein_coding Interval_69961 chr17 3529778 3531674 + 0 NA intron (ENSMUSG00000036983.7, intron 5 of 6) protein_coding-intron (ENSMUSG00000036983.7, intron 5 of 6) -1828 ENSMUSG00000091530.2 ENSMUSG00000091530 ENSMUST00000168560 Cldn20 protein_coding Interval_36223 chr12 39899412 39900324 + 0 NA intron (ENSMUSG00000113874.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000113874.1, intron 1 of 1) 22991 ENSMUSG00000113874.1 ENSMUSG00000113874 ENSMUST00000220869 Gm47868 lincRNA Interval_159576 chr8 95547577 95548634 + 0 NA intron (ENSMUSG00000036598.4, intron 6 of 8) protein_coding-intron (ENSMUSG00000036598.4, intron 6 of 8) -3688 ENSMUSG00000110577.1 ENSMUSG00000110577 ENSMUST00000212067 1700112L15Rik TEC Interval_63930 chr16 4624125 4625297 + 0 NA exon (ENSMUSG00000014303.13, exon 4 of 4) protein_coding-exon (ENSMUSG00000014303.13, exon 4 of 4) 195 ENSMUSG00000014301.13 ENSMUSG00000014301 ENSMUST00000229767 Pam16 protein_coding Interval_86572 chr19 41780282 41780468 + 0 NA intron (ENSMUSG00000025154.15, intron 8 of 11) protein_coding-intron (ENSMUSG00000025154.15, intron 8 of 11) 21672 ENSMUSG00000025154.15 ENSMUSG00000025154 ENSMUST00000177495 Arhgap19 protein_coding Interval_47935 chr13 94484676 94484942 + 0 NA intron (ENSMUSG00000021686.6, intron 4 of 11) protein_coding-intron (ENSMUSG00000021686.6, intron 20 of 26) 11946 ENSMUSG00000021686.6 ENSMUSG00000021686 ENSMUST00000220505 Ap3b1 protein_coding Interval_129287 chr5 118690812 118691470 + 0 NA intron (ENSMUSG00000018076.12, intron 4 of 4) protein_coding-intron (ENSMUSG00000018076.12, intron 4 of 30) 3523 ENSMUSG00000107115.1 ENSMUSG00000107115 ENSMUST00000201451 Gm43052 TEC Interval_70807 chr17 14887203 14887406 + 0 NA intron (ENSMUSG00000046991.12, intron 21 of 24) protein_coding-intron (ENSMUSG00000046991.12, intron 20 of 22) -54661 ENSMUSG00000092577.1 ENSMUSG00000092577 ENSMUST00000172650 Gm7393 processed_pseudogene Interval_59778 chr15 59189882 59190090 + 0 NA Intergenic Intergenic -20922 ENSMUSG00000025922.9 ENSMUSG00000025922 ENSMUST00000027054 Rpl7-ps8 processed_pseudogene Interval_1380 chr1 21201321 21202834 + 0 NA Intergenic Intergenic -16498 ENSMUSG00000025933.15 ENSMUSG00000025933 ENSMUST00000027064 Tmem14a protein_coding Interval_4992 chr1 83810941 83811782 + 0 NA intron (ENSMUSG00000100580.6, intron 2 of 4) lincRNA-intron (ENSMUSG00000100580.6, intron 2 of 4) 15449 ENSMUSG00000094946.1 ENSMUSG00000094946 ENSMUST00000178653 Gm25754 miRNA Interval_40434 chr12 104863890 104865614 + 0 NA promoter-TSS (ENSMUSG00000021101.2) lincRNA-promoter-TSS (ENSMUSG00000021101.2) 324 ENSMUSG00000021097.15 ENSMUSG00000021097 ENSMUST00000222412 Clmn protein_coding Interval_46561 chr13 67172723 67173765 + 0 NA promoter-TSS (ENSMUSG00000058900.5) protein_coding-promoter-TSS (ENSMUSG00000058900.5) 45 ENSMUSG00000058900.5 ENSMUSG00000058900 ENSMUST00000225334 Rsl1 protein_coding Interval_117853 chr4 126626494 126627778 + 0 NA Intergenic Intergenic 17282 ENSMUSG00000073755.4 ENSMUSG00000073755 ENSMUST00000164362 5730409E04Rik protein_coding Interval_93130 chr2 70465698 70465929 + 0 NA Intergenic Intergenic 6831 ENSMUSG00000047965.9 ENSMUSG00000047965 ENSMUST00000140507 Rpl9-ps7 processed_pseudogene Interval_47352 chr13 81761756 81762421 + 0 NA Intergenic Intergenic 21661 ENSMUSG00000097793.1 ENSMUSG00000097793 ENSMUST00000181520 Gm17259 antisense Interval_52872 chr14 51387850 51388059 + 0 NA intron (ENSMUSG00000089761.3, intron 1 of 1) processed_transcript-intron (ENSMUSG00000089761.3, intron 1 of 1) 10606 ENSMUSG00000089761.3 ENSMUSG00000089761 ENSMUST00000161565 Vmn2r-ps111 processed_transcript Interval_160394 chr8 108919807 108920429 + 0 NA intron (ENSMUSG00000093697.1, intron 1 of 1) protein_coding-intron (ENSMUSG00000038872.10, intron 5 of 9) 1756 ENSMUSG00000093697.1 ENSMUSG00000093697 ENSMUST00000175846 Gm20686 antisense Interval_14033 chr10 25782622 25784236 + 0 NA intron (ENSMUSG00000112444.1, intron 4 of 4) lincRNA-intron (ENSMUSG00000112444.1, intron 4 of 4) -47705 ENSMUSG00000112491.1 ENSMUSG00000112491 ENSMUST00000218231 Gm19801 processed_pseudogene Interval_99863 chr2 165371167 165371543 + 0 NA Intergenic Intergenic -2632 ENSMUSG00000056824.15 ENSMUSG00000056824 ENSMUST00000141140 Zfp663 protein_coding Interval_88005 chr19 57762701 57762960 + 0 NA intron (ENSMUSG00000054843.9, intron 24 of 28) protein_coding-intron (ENSMUSG00000054843.9, intron 24 of 28) 151796 ENSMUSG00000054843.9 ENSMUSG00000054843 ENSMUST00000077282 Atrnl1 protein_coding Interval_122784 chr5 25436205 25436907 + 0 NA intron (ENSMUSG00000038056.15, intron 2 of 13) protein_coding-intron (ENSMUSG00000038056.15, intron 2 of 58) -3271 ENSMUSG00000092181.1 ENSMUSG00000092181 ENSMUST00000173716 Gm20432 processed_pseudogene Interval_49438 chr13 111991022 111991418 + 0 NA promoter-TSS (ENSMUSG00000086402.1) lincRNA-promoter-TSS (ENSMUSG00000086402.1) -246 ENSMUSG00000086402.1 ENSMUSG00000086402 ENSMUST00000142621 Gm15322 lincRNA Interval_64900 chr16 17076432 17077903 + 0 NA promoter-TSS (ENSMUSG00000022773.19) protein_coding-promoter-TSS (ENSMUSG00000022773.19) -669 ENSMUSG00000022773.19 ENSMUSG00000022773 ENSMUST00000239090 Ypel1 protein_coding Interval_132278 chr5 143892424 143892724 + 0 NA intron (ENSMUSG00000029607.14, intron 3 of 3) protein_coding-intron (ENSMUSG00000029607.14, intron 2 of 2) 5111 ENSMUSG00000029607.14 ENSMUSG00000029607 ENSMUST00000110718 Ankrd61 protein_coding Interval_95457 chr2 109743668 109743968 + 0 NA Intergenic Intergenic 48716 ENSMUSG00000083915.1 ENSMUSG00000083915 ENSMUST00000120873 Gm13932 processed_pseudogene Interval_116451 chr4 112559743 112559960 + 0 NA intron (ENSMUSG00000034359.16, intron 1 of 6) protein_coding-intron (ENSMUSG00000034359.16, intron 1 of 6) -6556 ENSMUSG00000083753.1 ENSMUSG00000083753 ENSMUST00000117091 Gm12814 unprocessed_pseudogene Interval_125436 chr5 67101094 67101992 + 0 NA Intergenic Intergenic -2486 ENSMUSG00000012520.10 ENSMUSG00000012520 ENSMUST00000174251 Phox2b protein_coding Interval_59804 chr15 59397362 59397610 + 0 NA intron (ENSMUSG00000059586.10, intron 2 of 7) protein_coding-intron (ENSMUSG00000059586.10, intron 2 of 6) 23201 ENSMUSG00000059586.10 ENSMUSG00000059586 ENSMUST00000079703 Nsmce2 protein_coding Interval_20302 chr10 116749418 116749632 + 0 NA Intergenic Intergenic 20272 ENSMUSG00000112924.1 ENSMUSG00000112924 ENSMUST00000218193 4930579P08Rik lincRNA Interval_24734 chr11 36396306 36396548 + 0 NA intron (ENSMUSG00000049336.16, intron 2 of 28) protein_coding-intron (ENSMUSG00000049336.16, intron 2 of 28) 118386 ENSMUSG00000086375.1 ENSMUSG00000086375 ENSMUST00000123278 Gm12127 antisense Interval_62331 chr15 90238592 90238807 + 0 NA Intergenic Intergenic 14339 ENSMUSG00000099319.1 ENSMUSG00000099319 ENSMUST00000183650 Mir7648 miRNA Interval_31488 chr11 100976294 100976732 + 0 NA Intergenic Intergenic -5962 ENSMUSG00000004044.9 ENSMUSG00000004044 ENSMUST00000132934 Cavin1 protein_coding Interval_150085 chr7 105726315 105726882 + 0 NA Intergenic Intergenic 7348 ENSMUSG00000030888.14 ENSMUSG00000030888 ENSMUST00000137902 Rrp8 protein_coding Interval_21180 chr10 127078362 127081907 + 0 NA exon (ENSMUSG00000025422.10, exon 1 of 19) protein_coding-exon (ENSMUSG00000025422.10, exon 1 of 19) 4850 ENSMUSG00000025422.10 ENSMUSG00000025422 ENSMUST00000217941 Agap2 protein_coding Interval_163496 chr9 21723141 21724770 + 0 NA promoter-TSS (ENSMUSG00000097155.1) lincRNA-promoter-TSS (ENSMUSG00000097155.1) -505 ENSMUSG00000097155.1 ENSMUSG00000097155 ENSMUST00000181400 Gm26511 lincRNA Interval_29578 chr11 85094980 85095615 + 0 NA exon (ENSMUSG00000083876.1, exon 1 of 1) processed_pseudogene-exon (ENSMUSG00000083876.1, exon 1 of 1) 252 ENSMUSG00000083876.1 ENSMUSG00000083876 ENSMUST00000118598 Gm11439 processed_pseudogene Interval_25659 chr11 50492477 50493288 + 0 NA Intergenic Intergenic 18295 ENSMUSG00000089366.1 ENSMUSG00000089366 ENSMUST00000158741 Gm23824 misc_RNA Interval_97995 chr2 146511429 146512560 + 0 NA promoter-TSS (ENSMUSG00000037110.20) protein_coding-promoter-TSS (ENSMUSG00000037110.20) 350 ENSMUSG00000037110.20 ENSMUSG00000037110 ENSMUST00000124709 Ralgapa2 protein_coding Interval_10084 chr1 165678943 165679735 + 0 NA intron (ENSMUSG00000040723.14, intron 2 of 2) protein_coding-intron (ENSMUSG00000040723.14, intron 1 of 6) -15426 ENSMUSG00000105249.1 ENSMUSG00000105249 ENSMUST00000196594 Gm44458 miRNA Interval_119497 chr4 137940901 137942232 + 0 NA intron (ENSMUSG00000057530.14, intron 9 of 19) protein_coding-intron (ENSMUSG00000057530.14, intron 9 of 19) 28095 ENSMUSG00000057530.14 ENSMUSG00000057530 ENSMUST00000129607 Ece1 protein_coding Interval_171752 chr9 120723581 120724347 + 0 NA Intergenic Intergenic -17727 ENSMUSG00000111679.1 ENSMUSG00000111679 ENSMUST00000213340 Gm47063 TEC Interval_37921 chr12 73063718 73064141 + 0 NA Intergenic Intergenic -21114 ENSMUSG00000051367.8 ENSMUSG00000051367 ENSMUST00000175677 Six1 protein_coding Interval_71689 chr17 25452846 25453208 + 0 NA Intergenic Intergenic -18570 ENSMUSG00000024175.2 ENSMUSG00000024175 ENSMUST00000234436 Tekt4 protein_coding Interval_141020 chr6 124430014 124431706 + 0 NA TTS (ENSMUSG00000008153.12) protein_coding-TTS (ENSMUSG00000008153.12) 2640 ENSMUSG00000008153.12 ENSMUSG00000008153 ENSMUST00000150774 Clstn3 protein_coding Interval_1725 chr1 32772620 32772841 + 0 NA Intergenic Intergenic 46091 ENSMUSG00000089395.1 ENSMUSG00000089395 ENSMUST00000158770 Gm23024 misc_RNA Interval_12112 chr1 189830562 189832173 + 0 NA intron (ENSMUSG00000026604.17, intron 5 of 9) protein_coding-intron (ENSMUSG00000026604.17, intron 4 of 17) 4137 ENSMUSG00000102248.1 ENSMUSG00000102248 ENSMUST00000192214 Gm30280 processed_pseudogene Interval_8848 chr1 151517504 151518329 + 0 NA Intergenic Intergenic 2771 ENSMUSG00000100551.1 ENSMUSG00000100551 ENSMUST00000187109 Gm19503 processed_pseudogene Interval_154826 chr8 23868207 23868478 + 0 NA intron (ENSMUSG00000037492.16, intron 4 of 7) protein_coding-intron (ENSMUSG00000037492.16, intron 3 of 6) -115577 ENSMUSG00000109158.1 ENSMUSG00000109158 ENSMUST00000209073 Gm45166 TEC Interval_116651 chr4 116342337 116343070 + 0 NA intron (ENSMUSG00000003810.13, intron 2 of 25) protein_coding-intron (ENSMUSG00000003810.13, intron 5 of 28) 29029 ENSMUSG00000003810.13 ENSMUSG00000003810 ENSMUST00000151347 Mast2 protein_coding Interval_136114 chr6 51170573 51171202 + 0 NA Intergenic Intergenic 99023 ENSMUSG00000065505.1 ENSMUSG00000065505 ENSMUST00000083571 Mir148a miRNA Interval_69926 chr17 3240741 3240968 + 0 NA intron (ENSMUSG00000116858.1, intron 1 of 3) lincRNA-intron (ENSMUSG00000116858.1, intron 1 of 3) 9583 ENSMUSG00000116858.1 ENSMUSG00000116858 ENSMUST00000232042 Gm49797 lincRNA Interval_174339 chrX 145300228 145300471 + 0 NA intron (ENSMUSG00000041700.9, intron 3 of 3) protein_coding-intron (ENSMUSG00000041700.9, intron 3 of 3) -34823 ENSMUSG00000082085.1 ENSMUSG00000082085 ENSMUST00000120983 Gm6441 processed_pseudogene Interval_33045 chr11 113855116 113856048 + 0 NA intron (ENSMUSG00000041592.16, intron 15 of 18) protein_coding-intron (ENSMUSG00000041592.16, intron 15 of 44) -45159 ENSMUSG00000041592.16 ENSMUSG00000041592 ENSMUST00000144301 Sdk2 protein_coding Interval_27837 chr11 70334137 70334867 + 0 NA Intergenic Intergenic 11194 ENSMUSG00000018924.6 ENSMUSG00000018924 ENSMUST00000130000 Alox15 protein_coding Interval_166190 chr9 57343198 57343876 + 0 NA Intergenic Intergenic 9409 ENSMUSG00000066626.5 ENSMUSG00000066626 ENSMUST00000085711 Gm5121 processed_pseudogene Interval_20549 chr10 118839480 118839913 + 0 NA Intergenic Intergenic -4590 ENSMUSG00000112616.1 ENSMUSG00000112616 ENSMUST00000218937 Gm47434 TEC Interval_169420 chr9 97102443 97105145 + 0 NA intron (ENSMUSG00000032449.13, intron 1 of 7) protein_coding-intron (ENSMUSG00000032449.13, intron 1 of 6) -13767 ENSMUSG00000032449.13 ENSMUSG00000032449 ENSMUST00000152632 Slc25a36 protein_coding Interval_29928 chr11 87801835 87803027 + 0 NA promoter-TSS (ENSMUSG00000009350.13) protein_coding-promoter-TSS (ENSMUSG00000009350.13) -686 ENSMUSG00000009350.13 ENSMUSG00000009350 ENSMUST00000167903 Mpo protein_coding Interval_37374 chr12 65862839 65863061 + 0 NA Intergenic Intergenic -105426 ENSMUSG00000113785.1 ENSMUSG00000113785 ENSMUST00000222655 Gm47975 TEC Interval_56580 chr14 120484186 120485638 + 0 NA intron (ENSMUSG00000051615.14, intron 1 of 1) protein_coding-intron (ENSMUSG00000051615.14, intron 1 of 1) 6468 ENSMUSG00000051615.14 ENSMUSG00000051615 ENSMUST00000062117 Rap2a protein_coding Interval_142932 chr6 147067770 147069388 + 0 NA intron (ENSMUSG00000040112.9, intron 2 of 2) protein_coding-intron (ENSMUSG00000040112.9, intron 7 of 7) 18422 ENSMUSG00000072662.2 ENSMUSG00000072662 ENSMUST00000123367 Mansc4 protein_coding Interval_92687 chr2 62643510 62643926 + 0 NA intron (ENSMUSG00000026896.14, intron 1 of 7) protein_coding-intron (ENSMUSG00000026896.14, intron 1 of 15) 2537 ENSMUSG00000026896.14 ENSMUSG00000026896 ENSMUST00000175964 Ifih1 protein_coding Interval_162441 chr8 128753884 128754174 + 0 NA intron (ENSMUSG00000025808.17, intron 8 of 10) protein_coding-intron (ENSMUSG00000102141.1, intron 6 of 6) -17141 ENSMUSG00000087870.1 ENSMUSG00000087870 ENSMUST00000157245 Gm26100 snoRNA Interval_150153 chr7 107416349 107416560 + 0 NA intron (ENSMUSG00000062542.11, intron 1 of 1) protein_coding-intron (ENSMUSG00000062542.11, intron 1 of 6) 50382 ENSMUSG00000109078.1 ENSMUSG00000109078 ENSMUST00000208516 Gm19033 processed_pseudogene Interval_156484 chr8 48646284 48646758 + 0 NA exon (ENSMUSG00000031561.16, exon 2 of 29) protein_coding-exon (ENSMUSG00000031561.16, exon 2 of 29) -15352 ENSMUSG00000110509.1 ENSMUSG00000110509 ENSMUST00000212961 Gm45772 processed_pseudogene Interval_144147 chr7 19654622 19655049 + 0 NA TTS (ENSMUSG00000002981.10) protein_coding-TTS (ENSMUSG00000002981.10) -17089 ENSMUSG00000002981.10 ENSMUSG00000002981 ENSMUST00000208594 Clptm1 protein_coding Interval_144985 chr7 29272145 29272722 + 0 NA intron (ENSMUSG00000074227.12, intron 1 of 6) protein_coding-intron (ENSMUSG00000074227.12, intron 1 of 6) -7243 ENSMUSG00000074227.12 ENSMUSG00000074227 ENSMUST00000208585 Spint2 protein_coding Interval_157031 chr8 64634283 64634520 + 0 NA intron (ENSMUSG00000037852.8, intron 1 of 8) protein_coding-intron (ENSMUSG00000037852.8, intron 1 of 8) -12404 ENSMUSG00000037852.8 ENSMUSG00000037852 ENSMUST00000211312 Cpe protein_coding Interval_149013 chr7 91882421 91882622 + 0 NA intron (ENSMUSG00000052572.19, intron 4 of 21) protein_coding-intron (ENSMUSG00000052572.19, intron 5 of 22) -25542 ENSMUSG00000108953.1 ENSMUSG00000108953 ENSMUST00000208444 Gm45129 TEC Interval_12232 chr1 191008743 191009153 + 0 NA promoter-TSS (ENSMUSG00000066595.9) protein_coding-promoter-TSS (ENSMUSG00000066595.9) 2963 ENSMUSG00000066595.9 ENSMUSG00000066595 ENSMUST00000191946 Flvcr1 protein_coding Interval_157818 chr8 74147719 74147952 + 0 NA Intergenic Intergenic -54151 ENSMUSG00000110703.1 ENSMUSG00000110703 ENSMUST00000211967 Gm45821 lincRNA Interval_139600 chr6 102203424 102203841 + 0 NA intron (ENSMUSG00000030075.10, intron 18 of 22) protein_coding-intron (ENSMUSG00000030075.10, intron 17 of 21) -26520 ENSMUSG00000108092.1 ENSMUSG00000108092 ENSMUST00000204387 Gm44189 TEC Interval_161396 chr8 120210151 120211523 + 0 NA intron (ENSMUSG00000097960.1, intron 2 of 2) protein_coding-intron (ENSMUSG00000092329.1, intron 1 of 15) 17393 ENSMUSG00000097960.1 ENSMUSG00000097960 ENSMUST00000183235 A330074K22Rik lincRNA Interval_31711 chr11 102375357 102377737 + 0 NA intron (ENSMUSG00000087330.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000087330.1, intron 1 of 2) 473 ENSMUSG00000087330.1 ENSMUSG00000087330 ENSMUST00000126237 Bloodlinc lincRNA Interval_88511 chr2 5735129 5736803 + 0 NA Intergenic Intergenic -21463 ENSMUSG00000039145.16 ENSMUSG00000039145 ENSMUST00000155927 Camk1d protein_coding Interval_81621 chr18 62232261 62233526 + 0 NA Intergenic Intergenic 52767 ENSMUSG00000054589.1 ENSMUSG00000054589 ENSMUST00000067743 Gm9949 lincRNA Interval_42863 chr13 20564131 20564941 + 0 NA exon (ENSMUSG00000041112.17, exon 17 of 22) protein_coding-exon (ENSMUSG00000041112.17, exon 17 of 22) 59741 ENSMUSG00000113557.1 ENSMUSG00000113557 ENSMUST00000220999 Gm47657 TEC Interval_97392 chr2 135731235 135732697 + 0 NA intron (ENSMUSG00000039943.16, intron 1 of 2) protein_coding-intron (ENSMUSG00000039943.16, intron 1 of 28) -9864 ENSMUSG00000039943.16 ENSMUSG00000039943 ENSMUST00000147122 Plcb4 protein_coding Interval_10970 chr1 177684159 177685183 + 0 NA Intergenic Intergenic -41728 ENSMUSG00000101746.1 ENSMUSG00000101746 ENSMUST00000189507 2310043L19Rik lincRNA Interval_82995 chr18 80242852 80243039 + 0 NA intron (ENSMUSG00000078963.3, intron 1 of 4) protein_coding-intron (ENSMUSG00000078963.3, intron 1 of 4) -6112 ENSMUSG00000078963.3 ENSMUSG00000078963 ENSMUST00000166219 Hsbp1l1 protein_coding Interval_157640 chr8 71961340 71962009 + 0 NA intron (ENSMUSG00000052446.17, intron 1 of 3) protein_coding-intron (ENSMUSG00000052446.17, intron 1 of 3) 8227 ENSMUSG00000052446.17 ENSMUSG00000052446 ENSMUST00000151168 Zfp961 protein_coding Interval_164971 chr9 43525479 43526161 + 0 NA Intergenic Intergenic -9988 ENSMUSG00000111110.1 ENSMUSG00000111110 ENSMUST00000216439 Gm36855 lincRNA Interval_110700 chr4 6566473 6566919 + 0 NA Intergenic Intergenic 27135 ENSMUSG00000081388.1 ENSMUSG00000081388 ENSMUST00000117807 Gm11801 processed_pseudogene Interval_79664 chr18 34340188 34341121 + 0 NA Intergenic Intergenic 9478 ENSMUSG00000014504.16 ENSMUSG00000014504 ENSMUST00000142010 Srp19 protein_coding Interval_22852 chr11 16696167 16696577 + 0 NA Intergenic Intergenic 36339 ENSMUSG00000064831.1 ENSMUSG00000064831 ENSMUST00000082897 Gm25698 snRNA Interval_102519 chr3 27447049 27447413 + 0 NA intron (ENSMUSG00000039286.12, intron 23 of 26) protein_coding-intron (ENSMUSG00000039286.12, intron 22 of 25) 75880 ENSMUSG00000051136.1 ENSMUSG00000051136 ENSMUST00000057186 Ghsr protein_coding Interval_83314 chr18 84102714 84104325 + 0 NA Intergenic Intergenic -1253 ENSMUSG00000118225.1 ENSMUSG00000118225 ENSMUST00000235867 Gm31854 lincRNA Interval_158666 chr8 85025026 85027662 + 0 NA promoter-TSS (ENSMUSG00000041203.9) protein_coding-promoter-TSS (ENSMUSG00000041203.9) -479 ENSMUSG00000041203.9 ENSMUSG00000041203 ENSMUST00000047281 Trir protein_coding Interval_35698 chr12 28161016 28161895 + 0 NA Intergenic Intergenic -100927 ENSMUSG00000088937.1 ENSMUSG00000088937 ENSMUST00000158312 Gm25923 rRNA Interval_54263 chr14 66972431 66973401 + 0 NA Intergenic Intergenic 2464 ENSMUSG00000065673.1 ENSMUSG00000065673 ENSMUST00000083739 Gm24258 snoRNA Interval_117687 chr4 125556826 125557011 + 0 NA intron (ENSMUSG00000001985.9, intron 1 of 15) protein_coding-intron (ENSMUSG00000001985.9, intron 1 of 15) 52169 ENSMUSG00000094403.1 ENSMUSG00000094403 ENSMUST00000102081 Mir692-2 miRNA Interval_105969 chr3 90355779 90356066 + 0 NA intron (ENSMUSG00000042390.9, intron 4 of 4) protein_coding-intron (ENSMUSG00000042390.9, intron 8 of 9) 4504 ENSMUSG00000042390.9 ENSMUSG00000042390 ENSMUST00000206907 Gatad2b protein_coding Interval_17182 chr10 74328440 74328861 + 0 NA intron (ENSMUSG00000052613.16, intron 12 of 34) protein_coding-intron (ENSMUSG00000052613.16, intron 13 of 30) 381594 ENSMUSG00000052613.16 ENSMUSG00000052613 ENSMUST00000192370 Pcdh15 protein_coding Interval_99068 chr2 156990917 156992490 + 0 NA intron (ENSMUSG00000027634.14, intron 1 of 2) protein_coding-intron (ENSMUSG00000027634.14, intron 1 of 16) 224 ENSMUSG00000027634.14 ENSMUSG00000027634 ENSMUST00000132748 Ndrg3 protein_coding Interval_44467 chr13 45023243 45023479 + 0 NA Intergenic Intergenic 2994 ENSMUSG00000065656.1 ENSMUSG00000065656 ENSMUST00000083722 Gm23104 snRNA Interval_36535 chr12 48853332 48854074 + 0 NA Intergenic Intergenic 52341 ENSMUSG00000108639.1 ENSMUSG00000108639 ENSMUST00000205588 AC124542.1 unprocessed_pseudogene Interval_173478 chrX 94773699 94774089 + 0 NA exon (ENSMUSG00000082776.3, exon 1 of 1) processed_pseudogene-exon (ENSMUSG00000082776.3, exon 1 of 1) 140 ENSMUSG00000082776.3 ENSMUSG00000082776 ENSMUST00000118127 Gm7061 processed_pseudogene Interval_154384 chr8 15157507 15158585 + 0 NA intron (ENSMUSG00000110286.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000110286.1, intron 1 of 1) 17002 ENSMUSG00000110286.1 ENSMUSG00000110286 ENSMUST00000209946 Gm7706 lincRNA Interval_6371 chr1 106445824 106446724 + 0 NA Intergenic Intergenic 6674 ENSMUSG00000099604.1 ENSMUSG00000099604 ENSMUST00000189471 Gm6651 processed_pseudogene Interval_12100 chr1 189741940 189742165 + 0 NA intron (ENSMUSG00000026604.17, intron 1 of 9) protein_coding-intron (ENSMUSG00000026604.17, intron 1 of 18) 56724 ENSMUSG00000103374.1 ENSMUSG00000103374 ENSMUST00000193510 Gm37239 processed_pseudogene Interval_153570 chr8 3464237 3464548 + 0 NA intron (ENSMUSG00000069633.12, intron 1 of 4) protein_coding-intron (ENSMUSG00000069633.12, intron 2 of 4) 3278 ENSMUSG00000069633.12 ENSMUSG00000069633 ENSMUST00000118194 Pex11g protein_coding Interval_45388 chr13 54818129 54819106 + 0 NA Intergenic Intergenic 22287 ENSMUSG00000086097.1 ENSMUSG00000086097 ENSMUST00000148974 Gm16250 processed_pseudogene Interval_76697 chr17 83554990 83555188 + 0 NA Intergenic Intergenic -50583 ENSMUSG00000024248.14 ENSMUSG00000024248 ENSMUST00000234258 Cox7a2l protein_coding Interval_115991 chr4 106854524 106856116 + 0 NA Intergenic Intergenic -7400 ENSMUSG00000086940.1 ENSMUSG00000086940 ENSMUST00000151369 Gm12746 lincRNA Interval_151583 chr7 124135341 124135883 + 0 NA intron (ENSMUSG00000078591.1, intron 1 of 1) protein_coding-intron (ENSMUSG00000078591.1, intron 1 of 1) -10669 ENSMUSG00000077176.1 ENSMUSG00000077176 ENSMUST00000103988 Gm25759 snoRNA Interval_159437 chr8 94680582 94681027 + 0 NA promoter-TSS (ENSMUSG00000031775.5) protein_coding-promoter-TSS (ENSMUSG00000031775.5) -2198 ENSMUSG00000031775.5 ENSMUSG00000031775 ENSMUST00000213043 Pllp protein_coding Interval_153181 chr7 142145526 142146266 + 0 NA Intergenic Intergenic -1289 ENSMUSG00000110061.1 ENSMUSG00000110061 ENSMUST00000210537 Gm45337 protein_coding Interval_120727 chr4 150295882 150296662 + 0 NA intron (ENSMUSG00000039852.17, intron 1 of 22) protein_coding-intron (ENSMUSG00000039852.17, intron 1 of 22) 19164 ENSMUSG00000085787.3 ENSMUSG00000085787 ENSMUST00000136346 Gm13092 processed_pseudogene Interval_126826 chr5 93198224 93199126 + 0 NA intron (ENSMUSG00000063015.12, intron 2 of 5) protein_coding-intron (ENSMUSG00000063015.12, intron 2 of 6) 2877 ENSMUSG00000083700.1 ENSMUSG00000083700 ENSMUST00000121603 Gm2986 processed_pseudogene Interval_83435 chr18 85428609 85429295 + 0 NA Intergenic Intergenic 287773 ENSMUSG00000117854.1 ENSMUSG00000117854 ENSMUST00000237113 Gm7612 processed_pseudogene Interval_147444 chr7 67286871 67288350 + 0 NA intron (ENSMUSG00000030557.17, intron 2 of 2) protein_coding-intron (ENSMUSG00000030557.17, intron 4 of 10) 6039 ENSMUSG00000030557.17 ENSMUSG00000030557 ENSMUST00000144057 Mef2a protein_coding Interval_64590 chr16 13550028 13550448 + 0 NA intron (ENSMUSG00000022685.9, intron 23 of 23) protein_coding-intron (ENSMUSG00000022685.9, intron 22 of 23) -18687 ENSMUSG00000077488.1 ENSMUSG00000077488 ENSMUST00000104300 Gm25276 snoRNA Interval_6676 chr1 118682587 118682824 + 0 NA TTS (ENSMUSG00000088363.1) snRNA-TTS (ENSMUSG00000088363.1) 884 ENSMUSG00000088363.1 ENSMUSG00000088363 ENSMUST00000157738 Gm23497 snRNA Interval_47073 chr13 75339393 75339962 + 0 NA Intergenic Intergenic 139710 ENSMUSG00000113821.1 ENSMUSG00000113821 ENSMUST00000221326 Gm48234 processed_pseudogene Interval_48552 chr13 100107698 100108700 + 0 NA promoter-TSS (ENSMUSG00000021643.15) protein_coding-promoter-TSS (ENSMUSG00000021643.15) 140 ENSMUSG00000097022.2 ENSMUSG00000097022 ENSMUST00000180822 BC001981 antisense Interval_133772 chr6 11975751 11976207 + 0 NA intron (ENSMUSG00000029629.17, intron 5 of 5) protein_coding-intron (ENSMUSG00000029629.17, intron 7 of 15) -68400 ENSMUSG00000029629.17 ENSMUSG00000029629 ENSMUST00000214543 Phf14 protein_coding Interval_103115 chr3 35481230 35481505 + 0 NA Intergenic Intergenic 56433 ENSMUSG00000106496.1 ENSMUSG00000106496 ENSMUST00000199038 Gm7733 processed_pseudogene Interval_91664 chr2 46296736 46297068 + 0 NA Intergenic Intergenic -9434 ENSMUSG00000088868.1 ENSMUSG00000088868 ENSMUST00000158243 Gm23072 snoRNA Interval_20247 chr10 116422688 116422959 + 0 NA intron (ENSMUSG00000054934.10, intron 2 of 2) protein_coding-intron (ENSMUSG00000054934.10, intron 2 of 2) 4771 ENSMUSG00000020164.7 ENSMUSG00000020164 ENSMUST00000134586 Kcnmb4os1 antisense Interval_123301 chr5 31210626 31211162 + 0 NA exon (ENSMUSG00000106717.1, exon 1 of 1) TEC-exon (ENSMUSG00000106717.1, exon 1 of 1) 3421 ENSMUSG00000106717.1 ENSMUSG00000106717 ENSMUST00000200853 Gm42798 TEC Interval_145337 chr7 34047275 34047880 + 0 NA Intergenic Intergenic -10145 ENSMUSG00000083434.1 ENSMUSG00000083434 ENSMUST00000117861 Gm12760 processed_pseudogene Interval_24636 chr11 35487745 35489065 + 0 NA intron (ENSMUSG00000056427.10, intron 2 of 3) protein_coding-intron (ENSMUSG00000056427.10, intron 4 of 35) -128411 ENSMUSG00000065583.1 ENSMUSG00000065583 ENSMUST00000083649 Mir218-2 miRNA Interval_5963 chr1 93565380 93565790 + 0 NA intron (ENSMUSG00000034066.13, intron 5 of 12) protein_coding-intron (ENSMUSG00000034066.13, intron 5 of 26) 33770 ENSMUSG00000103854.1 ENSMUSG00000103854 ENSMUST00000194919 Gm37250 TEC Interval_99684 chr2 164179936 164180406 + 0 NA intron (ENSMUSG00000040154.11, intron 1 of 2) protein_coding-intron (ENSMUSG00000040154.11, intron 1 of 3) 2427 ENSMUSG00000040154.11 ENSMUSG00000040154 ENSMUST00000131974 Wfdc5 protein_coding Interval_120961 chr4 151948655 151949566 + 0 NA intron (ENSMUSG00000039768.16, intron 1 of 4) protein_coding-intron (ENSMUSG00000039768.16, intron 1 of 15) -29874 ENSMUSG00000039768.16 ENSMUSG00000039768 ENSMUST00000124955 Dnajc11 protein_coding Interval_42267 chr13 11343377 11343610 + 0 NA Intergenic Intergenic 83405 ENSMUSG00000077618.1 ENSMUSG00000077618 ENSMUST00000104430 Gm25496 snoRNA Interval_167812 chr9 72833961 72834828 + 0 NA intron (ENSMUSG00000036030.9, intron 2 of 19) protein_coding-intron (ENSMUSG00000036030.9, intron 2 of 19) -6831 ENSMUSG00000098471.1 ENSMUSG00000098471 ENSMUST00000183677 Gm27203 processed_pseudogene Interval_10627 chr1 172311483 172312845 + 0 NA promoter-TSS (ENSMUSG00000038034.15) protein_coding-promoter-TSS (ENSMUSG00000038034.15) -6596 ENSMUSG00000038034.15 ENSMUSG00000038034 ENSMUST00000150598 Igsf8 protein_coding Interval_28530 chr11 76535287 76537715 + 0 NA intron (ENSMUSG00000017631.19, intron 1 of 22) protein_coding-intron (ENSMUSG00000017631.19, intron 1 of 22) 22432 ENSMUSG00000080763.2 ENSMUSG00000080763 ENSMUST00000119724 Gm12341 processed_pseudogene Interval_126326 chr5 86712199 86712442 + 0 NA intron (ENSMUSG00000054537.8, intron 8 of 9) protein_coding-intron (ENSMUSG00000054537.8, intron 8 of 9) -16579 ENSMUSG00000089851.1 ENSMUSG00000089851 ENSMUST00000161985 Gm16579 antisense Interval_7417 chr1 131147933 131148501 + 0 NA Intergenic Intergenic -9972 ENSMUSG00000016526.8 ENSMUSG00000016526 ENSMUST00000189756 Dyrk3 protein_coding Interval_85881 chr19 32689617 32689868 + 0 NA intron (ENSMUSG00000013662.6, intron 6 of 8) protein_coding-intron (ENSMUSG00000013662.6, intron 6 of 9) 5128 ENSMUSG00000013662.6 ENSMUSG00000013662 ENSMUST00000237933 Atad1 protein_coding Interval_174059 chrX 133888711 133889327 + 0 NA Intergenic Intergenic 9094 ENSMUSG00000067377.12 ENSMUSG00000067377 ENSMUST00000177468 Tspan6 protein_coding Interval_148226 chr7 79983037 79983247 + 0 NA Intergenic Intergenic 33955 ENSMUSG00000077059.1 ENSMUSG00000077059 ENSMUST00000103871 Gm24541 miRNA Interval_170487 chr9 108278578 108279578 + 0 NA Intergenic Intergenic -11377 ENSMUSG00000032606.7 ENSMUSG00000032606 ENSMUST00000192035 Nicn1 protein_coding Interval_118374 chr4 130959818 130960693 + 0 NA Intergenic Intergenic -14535 ENSMUSG00000085804.1 ENSMUSG00000085804 ENSMUST00000143967 Gm12973 lincRNA Interval_59891 chr15 60899090 60899314 + 0 NA intron (ENSMUSG00000022347.8, intron 1 of 1) protein_coding-intron (ENSMUSG00000022347.8, intron 1 of 1) -13772 ENSMUSG00000115231.1 ENSMUSG00000115231 ENSMUST00000228929 4930402D18Rik antisense Interval_111332 chr4 19137406 19138653 + 0 NA Intergenic Intergenic -15503 ENSMUSG00000073991.4 ENSMUSG00000073991 ENSMUST00000137780 Cnbd1 protein_coding Interval_169261 chr9 95939390 95940099 + 0 NA intron (ENSMUSG00000032409.15, intron 40 of 46) protein_coding-intron (ENSMUSG00000032409.15, intron 40 of 46) 5131 ENSMUSG00000089085.1 ENSMUSG00000089085 ENSMUST00000158460 Gm24004 snRNA Interval_108929 chr3 133453938 133454812 + 0 NA Intergenic Intergenic -22552 ENSMUSG00000080506.1 ENSMUSG00000080506 ENSMUST00000116856 Gm25042 miRNA Interval_23281 chr11 21147977 21148191 + 0 NA exon (ENSMUSG00000020134.13, exon 7 of 7) protein_coding-exon (ENSMUSG00000020134.13, exon 7 of 7) 48550 ENSMUSG00000084362.1 ENSMUSG00000084362 ENSMUST00000121233 2610024D14Rik processed_pseudogene Interval_21540 chr10 129459497 129459920 + 0 NA Intergenic Intergenic -2154 ENSMUSG00000096497.2 ENSMUSG00000096497 ENSMUST00000077836 Olfr787 protein_coding Interval_105688 chr3 88577814 88578699 + 0 NA intron (ENSMUSG00000041355.13, intron 4 of 4) protein_coding-intron (ENSMUSG00000041355.13, intron 2 of 4) -1117 ENSMUSG00000074479.3 ENSMUSG00000074479 ENSMUST00000098952 Rtraf-ps processed_pseudogene Interval_45575 chr13 55982543 55983217 + 0 NA intron (ENSMUSG00000114493.2, intron 4 of 5) antisense-intron (ENSMUSG00000114493.2, intron 4 of 5) 47354 ENSMUSG00000114229.1 ENSMUSG00000114229 ENSMUST00000225745 Gm47072 processed_pseudogene Interval_103244 chr3 37387632 37387974 + 0 NA intron (ENSMUSG00000037225.13, intron 1 of 2) protein_coding-intron (ENSMUSG00000037225.13, intron 1 of 2) 7298 ENSMUSG00000105134.1 ENSMUSG00000105134 ENSMUST00000198438 Gm42923 TEC Interval_59973 chr15 62465440 62465631 + 0 NA Intergenic Intergenic -102440 ENSMUSG00000115862.1 ENSMUSG00000115862 ENSMUST00000230029 Gm41333 lincRNA Interval_168453 chr9 80802552 80802818 + 0 NA promoter-TSS (ENSMUSG00000098685.1) lincRNA-promoter-TSS (ENSMUSG00000098685.1) 34 ENSMUSG00000098685.1 ENSMUSG00000098685 ENSMUST00000184749 Gm27224 lincRNA Interval_85359 chr19 25177201 25177473 + 0 NA intron (ENSMUSG00000052085.7, intron 39 of 47) protein_coding-intron (ENSMUSG00000052085.7, intron 39 of 47) -11121 ENSMUSG00000065634.1 ENSMUSG00000065634 ENSMUST00000083700 Gm24252 snoRNA Interval_161761 chr8 122604291 122604931 + 0 NA intron (ENSMUSG00000015027.11, intron 2 of 11) protein_coding-intron (ENSMUSG00000015027.11, intron 2 of 13) 6793 ENSMUSG00000015027.11 ENSMUSG00000015027 ENSMUST00000211906 Galns protein_coding Interval_124093 chr5 38225725 38225931 + 0 NA TTS (ENSMUSG00000067367.9) protein_coding-TTS (ENSMUSG00000067367.9) 5300 ENSMUSG00000067367.9 ENSMUSG00000067367 ENSMUST00000131492 Lyar protein_coding Interval_140732 chr6 120911493 120911730 + 0 NA intron (ENSMUSG00000004446.12, intron 1 of 4) protein_coding-intron (ENSMUSG00000004446.12, intron 1 of 5) 2938 ENSMUSG00000108125.1 ENSMUSG00000108125 ENSMUST00000204935 Gm17812 processed_pseudogene Interval_21463 chr10 128755805 128756373 + 0 NA intron (ENSMUSG00000064030.15, intron 2 of 3) protein_coding-intron (ENSMUSG00000064030.15, intron 1 of 2) 7561 ENSMUSG00000064030.15 ENSMUSG00000064030 ENSMUST00000218218 Pym1 protein_coding Interval_4898 chr1 81759756 81760238 + 0 NA Intergenic Intergenic -17028 ENSMUSG00000087008.4 ENSMUSG00000087008 ENSMUST00000117185 Gm5530 processed_pseudogene Interval_119528 chr4 138153969 138154805 + 0 NA intron (ENSMUSG00000028760.16, intron 13 of 33) protein_coding-intron (ENSMUSG00000028760.16, intron 14 of 34) -8822 ENSMUSG00000098513.1 ENSMUSG00000098513 ENSMUST00000184050 Mir6399 miRNA Interval_18071 chr10 82095930 82096261 + 0 NA intron (ENSMUSG00000112160.1, intron 1 of 3) protein_coding-intron (ENSMUSG00000112160.1, intron 1 of 3) 12742 ENSMUSG00000112160.1 ENSMUSG00000112160 ENSMUST00000220287 BC024063 protein_coding Interval_20604 chr10 119345849 119346187 + 0 NA Intergenic Intergenic 3526 ENSMUSG00000112199.1 ENSMUSG00000112199 ENSMUST00000218187 Gm19090 processed_pseudogene Interval_54400 chr14 68452125 68453038 + 0 NA Intergenic Intergenic -9050 ENSMUSG00000114396.1 ENSMUSG00000114396 ENSMUST00000225482 Gm31227 lincRNA Interval_82805 chr18 77142868 77143736 + 0 NA intron (ENSMUSG00000025423.16, intron 12 of 14) protein_coding-intron (ENSMUSG00000025423.16, intron 11 of 12) 43061 ENSMUSG00000073532.3 ENSMUSG00000073532 ENSMUST00000097520 Gm7276 bidirectional_promoter_lncRNA Interval_77668 chr17 93943086 93943781 + 0 NA Intergenic Intergenic 188838 ENSMUSG00000117543.1 ENSMUSG00000117543 ENSMUST00000235005 Gm50004 processed_pseudogene Interval_127327 chr5 102915948 102916401 + 0 NA intron (ENSMUSG00000046709.18, intron 13 of 13) protein_coding-intron (ENSMUSG00000046709.18, intron 11 of 11) 35898 ENSMUSG00000105253.1 ENSMUSG00000105253 ENSMUST00000196071 Gm42522 processed_pseudogene Interval_172837 chrX 51035850 51036674 + 0 NA Intergenic Intergenic -7701 ENSMUSG00000082556.1 ENSMUSG00000082556 ENSMUST00000119776 Gm5387 processed_pseudogene Interval_133034 chr5 149433490 149434256 + 0 NA Intergenic Intergenic -4911 ENSMUSG00000106777.1 ENSMUSG00000106777 ENSMUST00000200931 Gm43150 antisense Interval_3691 chr1 60857526 60858256 + 0 NA Intergenic Intergenic -22447 ENSMUSG00000102549.1 ENSMUSG00000102549 ENSMUST00000193735 Gm38137 TEC Interval_104885 chr3 78249852 78250112 + 0 NA Intergenic Intergenic 115352 ENSMUSG00000103817.1 ENSMUSG00000103817 ENSMUST00000192789 Gm6680 processed_pseudogene Interval_115794 chr4 104499277 104499794 + 0 NA intron (ENSMUSG00000028519.16, intron 2 of 14) protein_coding-intron (ENSMUSG00000028519.16, intron 4 of 9) -105761 ENSMUSG00000028519.16 ENSMUSG00000028519 ENSMUST00000149672 Dab1 protein_coding Interval_114991 chr4 88161842 88162047 + 0 NA intron (ENSMUSG00000038368.16, intron 5 of 8) protein_coding-intron (ENSMUSG00000038368.16, intron 5 of 43) 10248 ENSMUSG00000082597.1 ENSMUSG00000082597 ENSMUST00000117297 Gm12645 processed_pseudogene Interval_103925 chr3 55021944 55022403 + 0 NA Intergenic Intergenic 32864 ENSMUSG00000027793.6 ENSMUSG00000027793 ENSMUST00000199352 Ccna1 protein_coding Interval_71894 chr17 26844377 26845140 + 0 NA intron (ENSMUSG00000015579.5, intron 1 of 2) protein_coding-intron (ENSMUSG00000015579.5, intron 1 of 2) 251 ENSMUSG00000015579.5 ENSMUSG00000015579 ENSMUST00000235454 Nkx2-5 protein_coding Interval_76743 chr17 83783626 83784583 + 0 NA intron (ENSMUSG00000055817.18, intron 9 of 16) protein_coding-intron (ENSMUSG00000055817.18, intron 10 of 16) 54940 ENSMUSG00000055817.18 ENSMUSG00000055817 ENSMUST00000175920 Mta3 protein_coding Interval_14858 chr10 40570269 40571095 + 0 NA promoter-TSS (ENSMUSG00000019834.15) protein_coding-promoter-TSS (ENSMUSG00000019834.15) 346 ENSMUSG00000019834.15 ENSMUSG00000019834 ENSMUST00000019978 Slc22a16 protein_coding Interval_44165 chr13 41367250 41367446 + 0 NA intron (ENSMUSG00000097373.1, intron 1 of 1) protein_coding-intron (ENSMUSG00000021365.15, intron 2 of 7) 7377 ENSMUSG00000097373.1 ENSMUSG00000097373 ENSMUST00000180728 Gm26877 antisense Interval_119330 chr4 136905022 136905919 + 0 NA Intergenic Intergenic -6667 ENSMUSG00000036887.5 ENSMUSG00000036887 ENSMUST00000046285 C1qa protein_coding Interval_27024 chr11 62428962 62431079 + 0 NA intron (ENSMUSG00000018501.17, intron 2 of 14) protein_coding-intron (ENSMUSG00000018501.17, intron 3 of 45) -28588 ENSMUSG00000014245.8 ENSMUSG00000014245 ENSMUST00000147918 Pigl protein_coding Interval_159275 chr8 92717223 92717539 + 0 NA promoter-TSS (ENSMUSG00000078967.5) processed_pseudogene-promoter-TSS (ENSMUSG00000078967.5) -406 ENSMUSG00000078967.5 ENSMUSG00000078967 ENSMUST00000181181 Gapdh-ps16 processed_pseudogene Interval_126229 chr5 83392552 83393938 + 0 NA Intergenic Intergenic -38289 ENSMUSG00000049537.10 ENSMUSG00000049537 ENSMUST00000146669 Tecrl protein_coding Interval_144652 chr7 27342526 27342985 + 0 NA TTS (ENSMUSG00000089832.8) protein_coding-TTS (ENSMUSG00000089832.8) -9107 ENSMUSG00000040488.18 ENSMUSG00000040488 ENSMUST00000206413 Ltbp4 protein_coding Interval_115409 chr4 98725093 98728824 + 0 NA intron (ENSMUSG00000087166.9, intron 1 of 1) protein_coding-intron (ENSMUSG00000087166.9, intron 1 of 2) -6245 ENSMUSG00000087166.9 ENSMUSG00000087166 ENSMUST00000173659 L1td1 protein_coding Interval_21978 chr11 5515456 5517056 + 0 NA Intergenic Intergenic -4739 ENSMUSG00000020484.19 ENSMUSG00000020484 ENSMUST00000149159 Xbp1 protein_coding Interval_91980 chr2 52127329 52128323 + 0 NA Intergenic Intergenic 15693 ENSMUSG00000036202.16 ENSMUSG00000036202 ENSMUST00000152178 Rif1 protein_coding Interval_168766 chr9 86784367 86784600 + 0 NA TTS (ENSMUSG00000103891.1) TEC-TTS (ENSMUSG00000103891.1) 2372 ENSMUSG00000103891.1 ENSMUSG00000103891 ENSMUST00000192170 Gm37941 TEC Interval_13217 chr10 13149388 13149718 + 0 NA TTS (ENSMUSG00000019815.7) protein_coding-TTS (ENSMUSG00000019815.7) 28470 ENSMUSG00000019815.7 ENSMUSG00000019815 ENSMUST00000219970 Zc2hc1b protein_coding Interval_43617 chr13 34140023 34140607 + 0 NA Intergenic Intergenic 6455 ENSMUSG00000113883.1 ENSMUSG00000113883 ENSMUST00000221821 Gm36500 lincRNA Interval_56602 chr14 120753601 120753896 + 0 NA Intergenic Intergenic 4563 ENSMUSG00000090284.2 ENSMUSG00000090284 ENSMUST00000138893 Gm17613 lincRNA Interval_62114 chr15 87180983 87181513 + 0 NA Intergenic Intergenic 12135 ENSMUSG00000064631.1 ENSMUSG00000064631 ENSMUST00000082697 n-R5s42 rRNA Interval_24920 chr11 41354352 41354748 + 0 NA Intergenic Intergenic -23528 ENSMUSG00000081112.1 ENSMUSG00000081112 ENSMUST00000121214 Gm12140 processed_pseudogene Interval_85290 chr19 24426944 24427456 + 0 NA intron (ENSMUSG00000085003.1, intron 3 of 3) protein_coding-intron (ENSMUSG00000024867.14, intron 3 of 14) 11191 ENSMUSG00000085003.1 ENSMUSG00000085003 ENSMUST00000126936 Pip5k1bos antisense Interval_159914 chr8 105157455 105158319 + 0 NA Intergenic Intergenic -6700 ENSMUSG00000099465.1 ENSMUSG00000099465 ENSMUST00000185540 Gm3830 lincRNA Interval_43777 chr13 36317070 36318148 + 0 NA intron (ENSMUSG00000021420.13, intron 4 of 7) protein_coding-intron (ENSMUSG00000021420.13, intron 4 of 6) -9349 ENSMUSG00000021420.13 ENSMUSG00000021420 ENSMUST00000225048 Fars2 protein_coding Interval_20704 chr10 120388488 120389071 + 0 NA promoter-TSS (ENSMUSG00000090191.1) antisense-promoter-TSS (ENSMUSG00000090191.1) -744 ENSMUSG00000090191.1 ENSMUSG00000090191 ENSMUST00000161291 9230105E05Rik antisense Interval_113082 chr4 47706078 47706413 + 0 NA Intergenic Intergenic 102356 ENSMUSG00000098518.1 ENSMUSG00000098518 ENSMUST00000184188 Gm27668 misc_RNA Interval_157889 chr8 75245452 75245869 + 0 NA Intergenic Intergenic 30004 ENSMUSG00000110515.1 ENSMUSG00000110515 ENSMUST00000212828 Gm9644 processed_pseudogene Interval_51503 chr14 28769751 28770033 + 0 NA Intergenic Intergenic 28529 ENSMUSG00000114577.1 ENSMUSG00000114577 ENSMUST00000225272 Gm35217 lincRNA Interval_43306 chr13 28923109 28923556 + 0 NA Intergenic Intergenic -25387 ENSMUSG00000113352.1 ENSMUSG00000113352 ENSMUST00000223473 Gm34639 lincRNA Interval_7404 chr1 131084140 131084702 + 0 NA intron (ENSMUSG00000016528.10, intron 1 of 9) protein_coding-intron (ENSMUSG00000016528.10, intron 1 of 9) 7728 ENSMUSG00000102856.1 ENSMUSG00000102856 ENSMUST00000191688 Gm37084 TEC Interval_171712 chr9 120410075 120410355 + 0 NA exon (ENSMUSG00000041794.13, exon 1 of 2) protein_coding-exon (ENSMUSG00000041794.13, exon 1 of 2) 23906 ENSMUSG00000041794.13 ENSMUSG00000041794 ENSMUST00000129168 Myrip protein_coding Interval_165676 chr9 50856167 50857652 + 0 NA promoter-TSS (ENSMUSG00000032058.14) protein_coding-promoter-TSS (ENSMUSG00000032058.14) -16103 ENSMUSG00000032058.14 ENSMUSG00000032058 ENSMUST00000176414 Ppp2r1b protein_coding Interval_130321 chr5 125669129 125669313 + 0 NA intron (ENSMUSG00000070498.3, intron 2 of 2) protein_coding-intron (ENSMUSG00000070498.3, intron 3 of 8) 137447 ENSMUSG00000070498.3 ENSMUSG00000070498 ENSMUST00000184422 Tmem132b protein_coding Interval_22812 chr11 16240443 16240731 + 0 NA Intergenic Intergenic 3658 ENSMUSG00000082410.1 ENSMUSG00000082410 ENSMUST00000119734 Gm12011 processed_pseudogene Interval_147396 chr7 66444823 66445533 + 0 NA TTS (ENSMUSG00000109114.1) lincRNA-TTS (ENSMUSG00000109114.1) 3292 ENSMUSG00000109114.1 ENSMUSG00000109114 ENSMUST00000208297 Gm44753 lincRNA Interval_64553 chr16 13249806 13250101 + 0 NA Intergenic Intergenic -108468 ENSMUSG00000009569.14 ENSMUSG00000009569 ENSMUST00000149359 Mrtfb protein_coding Interval_64865 chr16 16753374 16753727 + 0 NA exon (ENSMUSG00000022783.11, exon 11 of 11) protein_coding-exon (ENSMUSG00000022783.11, exon 11 of 11) -35454 ENSMUSG00000116096.1 ENSMUSG00000116096 ENSMUST00000230601 4933404G15Rik lincRNA Interval_113895 chr4 59662973 59663639 + 0 NA intron (ENSMUSG00000045071.14, intron 1 of 3) protein_coding-intron (ENSMUSG00000045071.14, intron 1 of 2) 68996 ENSMUSG00000028383.17 ENSMUSG00000028383 ENSMUST00000128792 Hsdl2 protein_coding Interval_147360 chr7 66114437 66114880 + 0 NA intron (ENSMUSG00000032640.10, intron 1 of 2) protein_coding-intron (ENSMUSG00000032640.10, intron 1 of 2) 4745 ENSMUSG00000065800.1 ENSMUSG00000065800 ENSMUST00000083866 Gm23042 snRNA Interval_80514 chr18 43189514 43190510 + 0 NA Intergenic Intergenic -17665 ENSMUSG00000039954.9 ENSMUSG00000039954 ENSMUST00000235682 Stk32a protein_coding Interval_121400 chr4 155532052 155532248 + 0 NA intron (ENSMUSG00000029064.15, intron 2 of 8) protein_coding-intron (ENSMUSG00000029064.15, intron 3 of 11) 9688 ENSMUSG00000029064.15 ENSMUSG00000029064 ENSMUST00000176308 Gnb1 protein_coding Interval_173508 chrX 96914538 96915337 + 0 NA Intergenic Intergenic 20287 ENSMUSG00000082397.1 ENSMUSG00000082397 ENSMUST00000117163 Gm14803 processed_pseudogene Interval_73589 chr17 40854311 40854794 + 0 NA intron (ENSMUSG00000098082.1, intron 1 of 7) unitary_pseudogene-intron (ENSMUSG00000098082.1, intron 1 of 7) 516 ENSMUSG00000098082.1 ENSMUSG00000098082 ENSMUST00000182867 Gm20574 unitary_pseudogene Interval_7292 chr1 128478698 128478935 + 0 NA Intergenic Intergenic -11224 ENSMUSG00000088196.1 ENSMUSG00000088196 ENSMUST00000157571 Gm23902 snoRNA Interval_142987 chr6 148060012 148060295 + 0 NA TTS (ENSMUSG00000089948.1) antisense-TTS (ENSMUSG00000089948.1) 7720 ENSMUSG00000089948.1 ENSMUSG00000089948 ENSMUST00000162391 Far2os1 antisense Interval_20234 chr10 116329400 116329601 + 0 NA intron (ENSMUSG00000020154.10, intron 10 of 33) protein_coding-intron (ENSMUSG00000020154.10, intron 8 of 31) -11083 ENSMUSG00000065086.1 ENSMUSG00000065086 ENSMUST00000083152 Gm26495 snoRNA Interval_139096 chr6 95088241 95089173 + 0 NA Intergenic Intergenic 11600 ENSMUSG00000093999.1 ENSMUSG00000093999 ENSMUST00000178307 Gm26501 snRNA Interval_71363 chr17 22703028 22703234 + 0 NA Intergenic Intergenic 13806 ENSMUSG00000117183.1 ENSMUSG00000117183 ENSMUST00000232973 Gm20008 processed_pseudogene Interval_167290 chr9 67071243 67072186 + 0 NA Intergenic Intergenic -30586 ENSMUSG00000111825.1 ENSMUSG00000111825 ENSMUST00000213227 Gm10646 lincRNA Interval_74530 chr17 53031479 53031825 + 0 NA Intergenic Intergenic 81592 ENSMUSG00000035580.10 ENSMUSG00000035580 ENSMUST00000184279 Kcnh8 protein_coding Interval_150119 chr7 106921569 106921956 + 0 NA Intergenic Intergenic 10457 ENSMUSG00000062553.3 ENSMUSG00000062553 ENSMUST00000072368 Olfr709-ps1 protein_coding Interval_97706 chr2 143042624 143043283 + 0 NA Intergenic Intergenic -20108 ENSMUSG00000008333.12 ENSMUSG00000008333 ENSMUST00000134091 Snrpb2 protein_coding Interval_102268 chr3 20150297 20150986 + 0 NA exon (ENSMUSG00000019528.18, exon 4 of 7) protein_coding-exon (ENSMUSG00000019528.18, exon 4 of 7) 4428 ENSMUSG00000019528.18 ENSMUSG00000019528 ENSMUST00000135475 Gyg protein_coding Interval_168110 chr9 76716035 76716481 + 0 NA TTS (ENSMUSG00000077144.1) snoRNA-TTS (ENSMUSG00000077144.1) 489 ENSMUSG00000077144.1 ENSMUSG00000077144 ENSMUST00000103956 Gm22938 snoRNA Interval_152158 chr7 130258784 130259335 + 0 NA intron (ENSMUSG00000030849.18, intron 2 of 16) protein_coding-intron (ENSMUSG00000030849.18, intron 1 of 14) 7196 ENSMUSG00000030849.18 ENSMUSG00000030849 ENSMUST00000208844 Fgfr2 protein_coding Interval_158314 chr8 81072503 81073487 + 0 NA Intergenic Intergenic 11661 ENSMUSG00000109980.1 ENSMUSG00000109980 ENSMUST00000210771 Gm45538 lincRNA Interval_42913 chr13 21322065 21323139 + 0 NA Intergenic Intergenic 5344 ENSMUSG00000004341.8 ENSMUSG00000004341 ENSMUST00000136668 Gpx6 protein_coding Interval_152487 chr7 133404097 133405506 + 0 NA Intergenic Intergenic -71600 ENSMUSG00000109619.1 ENSMUSG00000109619 ENSMUST00000209700 Gm45672 lincRNA Interval_158207 chr8 79785724 79785994 + 0 NA Intergenic Intergenic -12689 ENSMUSG00000110044.1 ENSMUSG00000110044 ENSMUST00000210550 Gm45434 processed_pseudogene Interval_169545 chr9 99021440 99022078 + 0 NA intron (ENSMUSG00000044860.9, intron 2 of 7) protein_coding-intron (ENSMUSG00000044860.9, intron 2 of 7) 13956 ENSMUSG00000044860.9 ENSMUSG00000044860 ENSMUST00000076730 Gm1123 protein_coding Interval_144417 chr7 25025063 25026655 + 0 NA intron (ENSMUSG00000003378.9, intron 13 of 20) protein_coding-intron (ENSMUSG00000003378.9, intron 12 of 19) -19916 ENSMUSG00000040907.15 ENSMUSG00000040907 ENSMUST00000125444 Atp1a3 protein_coding Interval_150835 chr7 115383005 115383188 + 0 NA Intergenic Intergenic 210823 ENSMUSG00000099211.1 ENSMUSG00000099211 ENSMUST00000183778 Gm27684 miRNA Interval_115815 chr4 104893789 104894673 + 0 NA Intergenic Intergenic -19293 ENSMUSG00000078612.9 ENSMUSG00000078612 ENSMUST00000106804 Fyb2 protein_coding Interval_81860 chr18 65424050 65424441 + 0 NA Intergenic Intergenic -3224 ENSMUSG00000093283.1 ENSMUSG00000093283 ENSMUST00000175542 Gm22567 misc_RNA Interval_93756 chr2 76655705 76656282 + 0 NA TTS (ENSMUSG00000075267.9) protein_coding-TTS (ENSMUSG00000075267.9) 7517 ENSMUSG00000075267.9 ENSMUSG00000075267 ENSMUST00000099986 Pjvk protein_coding Interval_17570 chr10 77835753 77836988 + 0 NA exon (ENSMUSG00000112223.1, exon 1 of 1) protein_coding-exon (ENSMUSG00000112223.1, exon 1 of 1) 423 ENSMUSG00000112223.1 ENSMUSG00000112223 ENSMUST00000218843 Krtap10-10 protein_coding Interval_23600 chr11 23692972 23693345 + 0 NA intron (ENSMUSG00000020280.12, intron 4 of 17) protein_coding-intron (ENSMUSG00000020280.12, intron 4 of 17) 26647 ENSMUSG00000020280.12 ENSMUSG00000020280 ENSMUST00000142287 Pus10 protein_coding Interval_54552 chr14 70634439 70636012 + 0 NA TTS (ENSMUSG00000022101.6) protein_coding-TTS (ENSMUSG00000022101.6) -6226 ENSMUSG00000022099.17 ENSMUSG00000022099 ENSMUST00000226543 Dmtn protein_coding Interval_11482 chr1 182130993 182131503 + 0 NA exon (ENSMUSG00000026511.7, exon 1 of 1) protein_coding-exon (ENSMUSG00000026511.7, exon 1 of 1) 549 ENSMUSG00000026511.7 ENSMUSG00000026511 ENSMUST00000193005 Srp9 protein_coding Interval_8293 chr1 136977667 136978584 + 0 NA Intergenic Intergenic 12145 ENSMUSG00000088970.1 ENSMUSG00000088970 ENSMUST00000158345 Gm23763 snRNA Interval_29827 chr11 87115010 87115947 + 0 NA promoter-TSS (ENSMUSG00000020492.11) protein_coding-promoter-TSS (ENSMUSG00000020492.11) 2474 ENSMUSG00000065589.1 ENSMUSG00000065589 ENSMUST00000083655 Mir301 miRNA Interval_23136 chr11 20122595 20123788 + 0 NA Intergenic Intergenic -10282 ENSMUSG00000020152.7 ENSMUSG00000020152 ENSMUST00000134779 Actr2 protein_coding Interval_42079 chr13 8107758 8108981 + 0 NA Intergenic Intergenic -19764 ENSMUSG00000113412.1 ENSMUSG00000113412 ENSMUST00000222882 Gm5191 processed_pseudogene Interval_67299 chr16 45723662 45725123 + 0 NA exon (ENSMUSG00000022658.10, exon 1 of 4) protein_coding-exon (ENSMUSG00000022658.10, exon 1 of 4) 216 ENSMUSG00000022658.10 ENSMUSG00000022658 ENSMUST00000096057 Tagln3 protein_coding Interval_72011 chr17 27572853 27573480 + 0 NA Intergenic Intergenic -7500 ENSMUSG00000062753.14 ENSMUSG00000062753 ENSMUST00000138728 AI413582 protein_coding Interval_143867 chr7 16848718 16849048 + 0 NA TTS (ENSMUSG00000041187.16) protein_coding-TTS (ENSMUSG00000041187.16) -14464 ENSMUSG00000041187.16 ENSMUSG00000041187 ENSMUST00000205798 Prkd2 protein_coding Interval_113179 chr4 49038389 49039120 + 0 NA Intergenic Intergenic -20702 ENSMUSG00000063446.4 ENSMUSG00000063446 ENSMUST00000151692 Plppr1 protein_coding Interval_70208 chr17 6731377 6732025 + 0 NA intron (ENSMUSG00000041831.17, intron 4 of 8) protein_coding-intron (ENSMUSG00000041831.17, intron 11 of 15) 11120 ENSMUSG00000052397.8 ENSMUSG00000052397 ENSMUST00000131131 Ezr protein_coding Interval_144824 chr7 28466430 28467869 + 0 NA exon (ENSMUSG00000030600.15, exon 2 of 2) protein_coding-exon (ENSMUSG00000030600.15, exon 2 of 2) 10703 ENSMUSG00000109201.1 ENSMUSG00000109201 ENSMUST00000208450 Gm6518 unprocessed_pseudogene Interval_172805 chrX 50341725 50342049 + 0 NA Intergenic Intergenic -15355 ENSMUSG00000083754.3 ENSMUSG00000083754 ENSMUST00000117176 Gm7803 processed_pseudogene Interval_97135 chr2 131538981 131539648 + 0 NA Intergenic Intergenic -22300 ENSMUSG00000087524.1 ENSMUSG00000087524 ENSMUST00000146049 Gm14285 antisense Interval_126279 chr5 85992928 85993266 + 0 NA Intergenic Intergenic 12520 ENSMUSG00000106225.1 ENSMUSG00000106225 ENSMUST00000196185 Gm43564 processed_pseudogene Interval_63628 chr15 102426797 102427716 + 0 NA intron (ENSMUSG00000001280.13, intron 4 of 5) protein_coding-intron (ENSMUSG00000001280.13, intron 4 of 5) -18192 ENSMUSG00000023047.11 ENSMUSG00000023047 ENSMUST00000161376 Amhr2 protein_coding Interval_158285 chr8 80823541 80824284 + 0 NA intron (ENSMUSG00000031714.9, intron 1 of 10) protein_coding-intron (ENSMUSG00000031714.9, intron 1 of 9) 6972 ENSMUSG00000031714.9 ENSMUSG00000031714 ENSMUST00000211018 Gab1 protein_coding Interval_113115 chr4 48439870 48440285 + 0 NA intron (ENSMUSG00000028345.15, intron 12 of 15) protein_coding-intron (ENSMUSG00000028345.15, intron 11 of 14) 33345 ENSMUSG00000028345.15 ENSMUSG00000028345 ENSMUST00000132911 Tex10 protein_coding Interval_146168 chr7 44487188 44487410 + 0 NA Intergenic Intergenic 9214 ENSMUSG00000008140.18 ENSMUSG00000008140 ENSMUST00000123928 Emc10 protein_coding Interval_30422 chr11 94274403 94275212 + 0 NA Intergenic Intergenic -7066 ENSMUSG00000094091.3 ENSMUSG00000094091 ENSMUST00000178891 Gm21885 protein_coding Interval_150666 chr7 113186033 113187181 + 0 NA Intergenic Intergenic -44592 ENSMUSG00000110009.1 ENSMUSG00000110009 ENSMUST00000210408 4930543E12Rik lincRNA Interval_16568 chr10 64039966 64040259 + 0 NA intron (ENSMUSG00000042846.8, intron 1 of 1) protein_coding-intron (ENSMUSG00000060843.11, intron 6 of 16) 50135 ENSMUSG00000042846.8 ENSMUSG00000042846 ENSMUST00000133588 Lrrtm3 protein_coding Interval_19621 chr10 105849796 105850080 + 0 NA Intergenic Intergenic 8434 ENSMUSG00000019897.8 ENSMUSG00000019897 ENSMUST00000155406 Ccdc59 protein_coding Interval_27440 chr11 67770879 67771436 + 0 NA promoter-TSS (ENSMUSG00000049928.15) protein_coding-promoter-TSS (ENSMUSG00000049928.15) -4 ENSMUSG00000049928.15 ENSMUSG00000049928 ENSMUST00000051765 Glp2r protein_coding Interval_81668 chr18 63007703 63008215 + 0 NA Intergenic Intergenic 30112 ENSMUSG00000024581.13 ENSMUSG00000024581 ENSMUST00000236914 Napg protein_coding Interval_73204 chr17 35562859 35564550 + 0 NA Intergenic Intergenic -1586 ENSMUSG00000092409.1 ENSMUSG00000092409 ENSMUST00000171662 Gm9613 processed_pseudogene Interval_2635 chr1 42705317 42705786 + 0 NA intron (ENSMUSG00000093436.6, intron 1 of 1) sense_overlapping-intron (ENSMUSG00000093436.6, intron 1 of 1) 2501 ENSMUSG00000097063.3 ENSMUSG00000097063 ENSMUST00000192894 Pantr2 processed_transcript Interval_129184 chr5 118049490 118050299 + 0 NA intron (ENSMUSG00000029359.13, intron 2 of 7) protein_coding-intron (ENSMUSG00000029359.13, intron 2 of 7) 13863 ENSMUSG00000029359.13 ENSMUSG00000029359 ENSMUST00000145526 Tesc protein_coding Interval_164762 chr9 41376111 41377093 + 0 NA promoter-TSS (ENSMUSG00000074415.14) processed_transcript-promoter-TSS (ENSMUSG00000074415.14) 292 ENSMUSG00000074415.14 ENSMUSG00000074415 ENSMUST00000188412 Mir100hg processed_transcript Interval_11995 chr1 188654352 188655466 + 0 NA intron (ENSMUSG00000026609.15, intron 12 of 12) protein_coding-intron (ENSMUSG00000026609.15, intron 36 of 70) -31856 ENSMUSG00000077235.1 ENSMUSG00000077235 ENSMUST00000104047 Gm25095 snoRNA Interval_23364 chr11 21915994 21916625 + 0 NA Intergenic Intergenic -36831 ENSMUSG00000082874.4 ENSMUSG00000082874 ENSMUST00000120694 Rpl15-ps1 processed_pseudogene Interval_45835 chr13 58452394 58453560 + 0 NA Intergenic Intergenic 9956 ENSMUSG00000114654.1 ENSMUSG00000114654 ENSMUST00000225848 Gm47918 lincRNA Interval_53291 chr14 55829803 55831811 + 0 NA TTS (ENSMUSG00000023411.12) protein_coding-TTS (ENSMUSG00000023411.12) 1338 ENSMUSG00000023411.12 ENSMUSG00000023411 ENSMUST00000226869 Nfatc4 protein_coding Interval_9679 chr1 160988943 160989648 + 0 NA promoter-TSS (ENSMUSG00000026715.12) protein_coding-promoter-TSS (ENSMUSG00000026715.12) 3537 ENSMUSG00000103222.1 ENSMUSG00000103222 ENSMUST00000194761 Gm37729 TEC Interval_48027 chr13 95348782 95349170 + 0 NA Intergenic Intergenic 16358 ENSMUSG00000077380.1 ENSMUSG00000077380 ENSMUST00000104192 Gm22661 snoRNA Interval_101396 chr2 181036338 181037208 + 0 NA intron (ENSMUSG00000027577.14, intron 2 of 4) protein_coding-intron (ENSMUSG00000027577.14, intron 2 of 5) -8445 ENSMUSG00000027577.14 ENSMUSG00000027577 ENSMUST00000124400 Chrna4 protein_coding Interval_71108 chr17 18236744 18237242 + 0 NA Intergenic Intergenic 40763 ENSMUSG00000090417.4 ENSMUSG00000090417 ENSMUST00000231390 Vmn2r94 protein_coding Interval_54469 chr14 70033475 70033707 + 0 NA intron (ENSMUSG00000114446.1, intron 2 of 2) protein_coding-intron (ENSMUSG00000022085.4, intron 4 of 6) 23776 ENSMUSG00000114446.1 ENSMUSG00000114446 ENSMUST00000224990 Gm33524 antisense Interval_144796 chr7 28323423 28324188 + 0 NA TTS (ENSMUSG00000003435.9) protein_coding-TTS (ENSMUSG00000003435.9) 8907 ENSMUSG00000109168.1 ENSMUSG00000109168 ENSMUST00000207649 Gm44709 antisense Interval_81085 chr18 53732060 53732237 + 0 NA intron (ENSMUSG00000048799.8, intron 5 of 14) protein_coding-intron (ENSMUSG00000048799.8, intron 5 of 20) 12415 ENSMUSG00000048799.8 ENSMUSG00000048799 ENSMUST00000235928 Cep120 protein_coding Interval_86341 chr19 38880470 38880735 + 0 NA intron (ENSMUSG00000048720.8, intron 2 of 10) protein_coding-intron (ENSMUSG00000048720.8, intron 2 of 12) -4640 ENSMUSG00000089545.1 ENSMUSG00000089545 ENSMUST00000158920 Gm25838 misc_RNA Interval_99312 chr2 158863626 158865951 + 0 NA Intergenic Intergenic 37370 ENSMUSG00000027655.14 ENSMUSG00000027655 ENSMUST00000143195 Dhx35 protein_coding Interval_27084 chr11 62766012 62766268 + 0 NA TTS (ENSMUSG00000086674.1) antisense-TTS (ENSMUSG00000086674.1) 4904 ENSMUSG00000086674.1 ENSMUSG00000086674 ENSMUST00000128292 Zfp286os antisense Interval_161641 chr8 121750649 121752176 + 0 NA intron (ENSMUSG00000025318.13, intron 1 of 5) protein_coding-intron (ENSMUSG00000025318.13, intron 1 of 4) -2064 ENSMUSG00000025318.13 ENSMUSG00000025318 ENSMUST00000172209 Jph3 protein_coding Interval_92769 chr2 65296412 65297270 + 0 NA intron (ENSMUSG00000080766.1, intron 1 of 1) processed_pseudogene-intron (ENSMUSG00000080766.1, intron 1 of 1) 528 ENSMUSG00000080766.1 ENSMUSG00000080766 ENSMUST00000121329 Gm13593 processed_pseudogene Interval_2474 chr1 39636292 39637172 + 0 NA intron (ENSMUSG00000050967.5, intron 2 of 3) protein_coding-intron (ENSMUSG00000050967.5, intron 2 of 3) -13444 ENSMUSG00000097083.1 ENSMUSG00000097083 ENSMUST00000181841 D930019O06Rik antisense Interval_111180 chr4 14343943 14344268 + 0 NA Intergenic Intergenic -89786 ENSMUSG00000081239.3 ENSMUSG00000081239 ENSMUST00000121022 Gm11836 processed_pseudogene Interval_93743 chr2 76441924 76442534 + 0 NA intron (ENSMUSG00000042359.18, intron 1 of 24) protein_coding-intron (ENSMUSG00000042359.18, intron 1 of 26) -36990 ENSMUSG00000092825.1 ENSMUSG00000092825 ENSMUST00000175084 Gm23164 miRNA Interval_142264 chr6 140243040 140243938 + 0 NA Intergenic Intergenic 52967 ENSMUSG00000107572.1 ENSMUSG00000107572 ENSMUST00000204425 Gm3961 TEC Interval_131391 chr5 136898437 136898650 + 0 NA Intergenic Intergenic 1899 ENSMUSG00000104707.1 ENSMUSG00000104707 ENSMUST00000196596 Gm43649 processed_pseudogene Interval_112822 chr4 45296493 45297773 + 0 NA promoter-TSS (ENSMUSG00000035601.9) protein_coding-promoter-TSS (ENSMUSG00000035601.9) -16965 ENSMUSG00000035601.9 ENSMUSG00000035601 ENSMUST00000145756 Trmt10b protein_coding Interval_146744 chr7 49863322 49865140 + 0 NA Intergenic Intergenic -46068 ENSMUSG00000039728.15 ENSMUSG00000039728 ENSMUST00000107605 Slc6a5 protein_coding Interval_65347 chr16 21755980 21756766 + 0 NA Intergenic Intergenic -17740 ENSMUSG00000088758.1 ENSMUSG00000088758 ENSMUST00000158133 Gm24898 snRNA Interval_85142 chr19 23140322 23143028 + 0 NA exon (ENSMUSG00000033863.2, exon 1 of 2) protein_coding-exon (ENSMUSG00000033863.2, exon 1 of 2) -1969 ENSMUSG00000033863.2 ENSMUSG00000033863 ENSMUST00000236357 Klf9 protein_coding Interval_50686 chr14 18208875 18209118 + 0 NA intron (ENSMUSG00000021775.11, intron 2 of 3) protein_coding-intron (ENSMUSG00000021775.11, intron 6 of 7) 8321 ENSMUSG00000105635.1 ENSMUSG00000105635 ENSMUST00000198558 Gm44469 miRNA Interval_63915 chr16 4550859 4551719 + 0 NA exon (ENSMUSG00000005718.8, exon 4 of 7) protein_coding-exon (ENSMUSG00000005718.8, exon 4 of 7) 7494 ENSMUSG00000005718.8 ENSMUSG00000005718 ENSMUST00000229956 Tfap4 protein_coding Interval_93505 chr2 73596469 73598412 + 0 NA intron (ENSMUSG00000086544.1, intron 1 of 3) antisense-intron (ENSMUSG00000086544.1, intron 1 of 3) 616 ENSMUSG00000086544.1 ENSMUSG00000086544 ENSMUST00000149231 Chn1os3 antisense Interval_146018 chr7 43241581 43242197 + 0 NA Intergenic Intergenic 27850 ENSMUSG00000074887.4 ENSMUSG00000074887 ENSMUST00000163106 EU599041 lincRNA Interval_110276 chr3 155459917 155460269 + 0 NA Intergenic Intergenic -54348 ENSMUSG00000103295.1 ENSMUSG00000103295 ENSMUST00000193152 Scp2-ps1 unprocessed_pseudogene Interval_111486 chr4 22072215 22072460 + 0 NA Intergenic Intergenic 45195 ENSMUSG00000082490.1 ENSMUSG00000082490 ENSMUST00000117612 Gm11880 processed_pseudogene Interval_10298 chr1 168268419 168269319 + 0 NA intron (ENSMUSG00000052534.15, intron 2 of 7) protein_coding-intron (ENSMUSG00000052534.15, intron 2 of 6) 68802 ENSMUSG00000103780.1 ENSMUSG00000103780 ENSMUST00000192272 Gm37524 TEC Interval_1779 chr1 33741814 33743182 + 0 NA TTS (ENSMUSG00000004768.14) protein_coding-TTS (ENSMUSG00000004768.14) -5509 ENSMUSG00000103072.1 ENSMUSG00000103072 ENSMUST00000195310 Gm37905 TEC Interval_105549 chr3 87607564 87607770 + 0 NA Intergenic Intergenic -9732 ENSMUSG00000093230.1 ENSMUSG00000093230 ENSMUST00000175489 Gm24109 miRNA Interval_106262 chr3 94988773 94989579 + 0 NA intron (ENSMUSG00000038861.14, intron 2 of 10) protein_coding-intron (ENSMUSG00000038861.14, intron 2 of 10) 7820 ENSMUSG00000084846.1 ENSMUSG00000084846 ENSMUST00000135483 A730011C13Rik antisense Interval_85302 chr19 24523323 24524478 + 0 NA intron (ENSMUSG00000024867.14, intron 1 of 3) protein_coding-intron (ENSMUSG00000024867.14, intron 1 of 14) 31938 ENSMUSG00000024867.14 ENSMUSG00000024867 ENSMUST00000145829 Pip5k1b protein_coding Interval_86642 chr19 42229496 42230691 + 0 NA Intergenic Intergenic -17481 ENSMUSG00000042532.14 ENSMUSG00000042532 ENSMUST00000087123 Golga7b protein_coding Interval_75309 chr17 65814125 65814339 + 0 NA TTS (ENSMUSG00000061950.17) protein_coding-TTS (ENSMUSG00000061950.17) -14716 ENSMUSG00000061950.17 ENSMUSG00000061950 ENSMUST00000162703 Ppp4r1 protein_coding Interval_101045 chr2 174502700 174503467 + 0 NA Intergenic Intergenic -17507 ENSMUSG00000080158.2 ENSMUSG00000080158 ENSMUST00000116315 Gm14385 processed_pseudogene Interval_45156 chr13 52833261 52834080 + 0 NA Intergenic Intergenic -76465 ENSMUSG00000113737.1 ENSMUSG00000113737 ENSMUST00000223209 BB123696 lincRNA Interval_147526 chr7 68030802 68031830 + 0 NA intron (ENSMUSG00000005533.10, intron 2 of 20) protein_coding-intron (ENSMUSG00000005533.10, intron 2 of 20) -144731 ENSMUSG00000109152.1 ENSMUSG00000109152 ENSMUST00000208544 Gm44666 processed_pseudogene Interval_134883 chr6 33094886 33095135 + 0 NA Intergenic Intergenic -6261 ENSMUSG00000087777.1 ENSMUSG00000087777 ENSMUST00000157152 Gm22321 snRNA Interval_88186 chr19 60490502 60491385 + 0 NA Intergenic Intergenic -22639 ENSMUSG00000045052.3 ENSMUSG00000045052 ENSMUST00000051277 Prlhr protein_coding Interval_92937 chr2 68825166 68826318 + 0 NA intron (ENSMUSG00000109667.1, intron 3 of 3) lincRNA-intron (ENSMUSG00000109667.1, intron 3 of 3) -5275 ENSMUSG00000082836.1 ENSMUSG00000082836 ENSMUST00000119276 Gm13612 processed_pseudogene Interval_73809 chr17 43980238 43981136 + 0 NA intron (ENSMUSG00000039601.16, intron 1 of 2) protein_coding-intron (ENSMUSG00000039601.16, intron 1 of 3) -18846 ENSMUSG00000088576.1 ENSMUSG00000088576 ENSMUST00000157951 Gm24532 misc_RNA Interval_7991 chr1 135096683 135097696 + 0 NA intron (ENSMUSG00000042793.13, intron 1 of 17) protein_coding-intron (ENSMUSG00000042793.13, intron 1 of 17) -11772 ENSMUSG00000097988.1 ENSMUSG00000097988 ENSMUST00000182275 Gm10535 antisense Interval_62405 chr15 91968843 91969763 + 0 NA Intergenic Intergenic 8563 ENSMUSG00000116212.1 ENSMUSG00000116212 ENSMUST00000229625 Gm18979 processed_pseudogene Interval_166927 chr9 63975754 63976615 + 0 NA intron (ENSMUSG00000036867.7, intron 3 of 3) protein_coding-intron (ENSMUSG00000036867.7, intron 3 of 3) 45848 ENSMUSG00000036867.7 ENSMUSG00000036867 ENSMUST00000179458 Smad6 protein_coding Interval_127121 chr5 100415782 100416792 + 0 NA promoter-TSS (ENSMUSG00000035325.16) protein_coding-promoter-TSS (ENSMUSG00000035325.16) -5681 ENSMUSG00000098355.1 ENSMUSG00000098355 ENSMUST00000183460 Gm27553 misc_RNA Interval_14874 chr10 40688945 40689811 + 0 NA intron (ENSMUSG00000045555.3, intron 1 of 4) protein_coding-intron (ENSMUSG00000045555.3, intron 1 of 4) 6096 ENSMUSG00000045555.3 ENSMUSG00000045555 ENSMUST00000058747 Mettl24 protein_coding Interval_38628 chr12 80660051 80661143 + 0 NA intron (ENSMUSG00000048833.9, intron 1 of 5) protein_coding-intron (ENSMUSG00000048833.9, intron 1 of 6) -11386 ENSMUSG00000112263.1 ENSMUSG00000112263 ENSMUST00000217770 Gm47874 processed_pseudogene Interval_157545 chr8 71333717 71334863 + 0 NA intron (ENSMUSG00000004677.17, intron 13 of 39) protein_coding-intron (ENSMUSG00000004677.17, intron 13 of 39) -32927 ENSMUSG00000002395.14 ENSMUSG00000002395 ENSMUST00000137137 Use1 protein_coding Interval_17105 chr10 71369637 71370327 + 0 NA intron (ENSMUSG00000060733.13, intron 3 of 5) protein_coding-intron (ENSMUSG00000060733.13, intron 3 of 5) 22146 ENSMUSG00000060733.13 ENSMUSG00000060733 ENSMUST00000145521 Ipmk protein_coding Interval_125663 chr5 73133358 73134250 + 0 NA intron (ENSMUSG00000070733.13, intron 3 of 19) protein_coding-intron (ENSMUSG00000070733.13, intron 2 of 59) -23210 ENSMUSG00000086376.2 ENSMUSG00000086376 ENSMUST00000146728 1700071G01Rik antisense Interval_134335 chr6 25626361 25626602 + 0 NA Intergenic Intergenic 63311 ENSMUSG00000039904.9 ENSMUSG00000039904 ENSMUST00000054867 Gpr37 protein_coding Interval_42122 chr13 8972579 8973530 + 0 NA exon (ENSMUSG00000021149.8, exon 16 of 16) protein_coding-exon (ENSMUSG00000021149.8, exon 16 of 16) 4290 ENSMUSG00000021149.8 ENSMUSG00000021149 ENSMUST00000220546 Gtpbp4 protein_coding Interval_97370 chr2 135543783 135543998 + 0 NA intron (ENSMUSG00000085631.1, intron 1 of 1) antisense-intron (ENSMUSG00000085631.1, intron 1 of 1) 39694 ENSMUSG00000085631.1 ENSMUSG00000085631 ENSMUST00000129868 9630028H03Rik antisense Interval_41122 chr12 111324411 111324759 + 0 NA intron (ENSMUSG00000021279.5, intron 9 of 36) protein_coding-intron (ENSMUSG00000021279.5, intron 9 of 36) -10048 ENSMUSG00000021279.5 ENSMUSG00000021279 ENSMUST00000222196 Cdc42bpb protein_coding Interval_116583 chr4 115877887 115878918 + 0 NA TTS (ENSMUSG00000100081.1) antisense-TTS (ENSMUSG00000100081.1) 174 ENSMUSG00000100081.1 ENSMUSG00000100081 ENSMUST00000187426 Gm29434 antisense Interval_81581 chr18 61809010 61809682 + 0 NA intron (ENSMUSG00000032735.15, intron 18 of 23) protein_coding-intron (ENSMUSG00000032735.15, intron 17 of 22) -22735 ENSMUSG00000033032.15 ENSMUSG00000033032 ENSMUST00000147278 Afap1l1 protein_coding Interval_93542 chr2 73924309 73925758 + 0 NA Intergenic Intergenic -13742 ENSMUSG00000018770.9 ENSMUSG00000018770 ENSMUST00000155474 Atp5g3 protein_coding Interval_13412 chr10 18002951 18004624 + 0 NA Intergenic Intergenic -7481 ENSMUSG00000091367.1 ENSMUSG00000091367 ENSMUST00000172028 Gm17711 pseudogene Interval_24300 chr11 32204654 32205931 + 0 NA promoter-TSS (ENSMUSG00000040767.10) protein_coding-promoter-TSS (ENSMUSG00000040767.10) -166 ENSMUSG00000040767.10 ENSMUSG00000040767 ENSMUST00000125837 Snrnp25 protein_coding Interval_171425 chr9 118188532 118188967 + 0 NA Intergenic Intergenic 38518 ENSMUSG00000097402.1 ENSMUSG00000097402 ENSMUST00000181824 Gm17399 lincRNA Interval_114388 chr4 74675601 74676174 + 0 NA Intergenic Intergenic 12204 ENSMUSG00000081438.1 ENSMUSG00000081438 ENSMUST00000122368 Gm11254 processed_pseudogene Interval_96054 chr2 119476684 119478499 + 0 NA promoter-TSS (ENSMUSG00000034154.15) protein_coding-promoter-TSS (ENSMUSG00000034154.15) 31638 ENSMUSG00000082369.1 ENSMUSG00000082369 ENSMUST00000119645 Gm14208 processed_pseudogene Interval_66162 chr16 32061847 32062368 + 0 NA intron (ENSMUSG00000022781.8, intron 1 of 14) protein_coding-intron (ENSMUSG00000022781.8, intron 1 of 14) -3803 ENSMUSG00000077460.1 ENSMUSG00000077460 ENSMUST00000104272 Gm26419 snoRNA Interval_140710 chr6 120769840 120770070 + 0 NA exon (ENSMUSG00000071226.11, exon 19 of 19) protein_coding-exon (ENSMUSG00000071226.11, exon 19 of 19) -3623 ENSMUSG00000004902.7 ENSMUSG00000004902 ENSMUST00000112682 Slc25a18 protein_coding Interval_157612 chr8 71707890 71708119 + 0 NA TTS (ENSMUSG00000070000.13) protein_coding-TTS (ENSMUSG00000070000.13) -3036 ENSMUSG00000110569.1 ENSMUSG00000110569 ENSMUST00000212029 Gm18860 processed_pseudogene Interval_21804 chr11 4462787 4464984 + 0 NA Intergenic Intergenic 24481 ENSMUSG00000034354.17 ENSMUSG00000034354 ENSMUST00000144242 Mtmr3 protein_coding Interval_172709 chrX 44808740 44810094 + 0 NA Intergenic Intergenic -19256 ENSMUSG00000045284.9 ENSMUSG00000045284 ENSMUST00000060481 Dcaf12l1 protein_coding Interval_40119 chr12 101725742 101725959 + 0 NA Intergenic Intergenic -7327 ENSMUSG00000021187.14 ENSMUSG00000021187 ENSMUST00000160830 Tc2n protein_coding Interval_153214 chr7 142499265 142499607 + 0 NA intron (ENSMUSG00000061723.18, intron 1 of 5) protein_coding-intron (ENSMUSG00000043795.10, intron 1 of 2) 590 ENSMUSG00000061723.18 ENSMUSG00000061723 ENSMUST00000144259 Tnnt3 protein_coding Interval_118453 chr4 131732693 131732896 + 0 NA Intergenic Intergenic -22286 ENSMUSG00000086856.1 ENSMUSG00000086856 ENSMUST00000152128 Gm16080 lincRNA Interval_155502 chr8 33958452 33959643 + 0 NA Intergenic Intergenic -26867 ENSMUSG00000110663.1 ENSMUSG00000110663 ENSMUST00000212322 Gm39157 lincRNA Interval_138446 chr6 88274289 88274493 + 0 NA intron (ENSMUSG00000033216.9, intron 6 of 7) protein_coding-intron (ENSMUSG00000033216.9, intron 6 of 6) -50752 ENSMUSG00000047046.8 ENSMUSG00000047046 ENSMUST00000156018 1700031F10Rik antisense Interval_94839 chr2 96091847 96092092 + 0 NA Intergenic Intergenic -41466 ENSMUSG00000082327.1 ENSMUSG00000082327 ENSMUST00000120750 Gm13801 processed_pseudogene Interval_123118 chr5 29799870 29800224 + 0 NA intron (ENSMUSG00000029131.14, intron 8 of 8) protein_coding-intron (ENSMUSG00000029131.14, intron 8 of 8) -5010 ENSMUSG00000106558.1 ENSMUSG00000106558 ENSMUST00000197149 Gm5552 processed_pseudogene Interval_2844 chr1 46313431 46313761 + 0 NA intron (ENSMUSG00000041144.12, intron 54 of 64) protein_coding-intron (ENSMUSG00000041144.12, intron 55 of 65) -60601 ENSMUSG00000096047.1 ENSMUSG00000096047 ENSMUST00000093689 n-R5s211 rRNA Interval_24665 chr11 35758332 35759643 + 0 NA Intergenic Intergenic -10497 ENSMUSG00000018846.8 ENSMUSG00000018846 ENSMUST00000018990 Pank3 protein_coding Interval_16452 chr10 62953991 62954644 + 0 NA exon (ENSMUSG00000036875.15, exon 4 of 21) protein_coding-exon (ENSMUSG00000036875.15, exon 4 of 21) -11364 ENSMUSG00000036875.15 ENSMUSG00000036875 ENSMUST00000137378 Dna2 protein_coding Interval_14391 chr10 32553271 32553903 + 0 NA intron (ENSMUSG00000069670.8, intron 1 of 3) protein_coding-intron (ENSMUSG00000069670.8, intron 1 of 6) -66588 ENSMUSG00000112075.1 ENSMUSG00000112075 ENSMUST00000219777 Gm47700 TEC Interval_15939 chr10 59501935 59502464 + 0 NA intron (ENSMUSG00000009647.13, intron 1 of 7) protein_coding-intron (ENSMUSG00000009647.13, intron 1 of 7) -71113 ENSMUSG00000009654.4 ENSMUSG00000009654 ENSMUST00000162493 Oit3 protein_coding Interval_164761 chr9 41273516 41274756 + 0 NA Intergenic Intergenic 45254 ENSMUSG00000111308.1 ENSMUSG00000111308 ENSMUST00000213107 Gm48710 TEC Interval_144979 chr7 29237805 29238865 + 0 NA promoter-TSS (ENSMUSG00000030588.12) protein_coding-promoter-TSS (ENSMUSG00000030588.12) -192 ENSMUSG00000030588.12 ENSMUSG00000030588 ENSMUST00000142519 Yif1b protein_coding Interval_120884 chr4 151292987 151293192 + 0 NA intron (ENSMUSG00000014592.21, intron 5 of 24) protein_coding-intron (ENSMUSG00000014592.21, intron 5 of 23) -83381 ENSMUSG00000085593.1 ENSMUSG00000085593 ENSMUST00000129097 4930589P08Rik antisense Interval_137108 chr6 67481828 67482059 + 0 NA intron (ENSMUSG00000049093.9, intron 3 of 10) protein_coding-intron (ENSMUSG00000049093.9, intron 3 of 10) 9912 ENSMUSG00000049093.9 ENSMUSG00000049093 ENSMUST00000118364 Il23r protein_coding Interval_132733 chr5 147462100 147462331 + 0 NA intron (ENSMUSG00000029647.15, intron 3 of 5) protein_coding-intron (ENSMUSG00000029647.15, intron 4 of 18) 22825 ENSMUSG00000107085.1 ENSMUSG00000107085 ENSMUST00000202594 Gm42883 processed_pseudogene Interval_101946 chr3 12721347 12721590 + 0 NA Intergenic Intergenic 90208 ENSMUSG00000104177.1 ENSMUSG00000104177 ENSMUST00000194635 Gm2429 processed_pseudogene Interval_1850 chr1 34127527 34128512 + 0 NA intron (ENSMUSG00000026131.20, intron 1 of 4) protein_coding-intron (ENSMUSG00000026131.20, intron 5 of 97) 10660 ENSMUSG00000105982.1 ENSMUSG00000105982 ENSMUST00000198033 Mir6896 miRNA Interval_62230 chr15 89020301 89020620 + 0 NA promoter-TSS (ENSMUSG00000015365.15) protein_coding-promoter-TSS (ENSMUSG00000015365.15) 1239 ENSMUSG00000064481.1 ENSMUSG00000064481 ENSMUST00000082547 Gm23737 snRNA Interval_5074 chr1 84810753 84811041 + 0 NA intron (ENSMUSG00000026219.14, intron 2 of 5) protein_coding-intron (ENSMUSG00000026219.14, intron 2 of 40) -1707 ENSMUSG00000103505.1 ENSMUSG00000103505 ENSMUST00000194417 Gm38374 TEC Interval_123189 chr5 30499092 30499314 + 0 NA intron (ENSMUSG00000053194.2, intron 3 of 6) protein_coding-intron (ENSMUSG00000053194.2, intron 3 of 6) 15481 ENSMUSG00000088327.1 ENSMUSG00000088327 ENSMUST00000157702 Gm25666 snRNA Interval_87621 chr19 53764425 53765756 + 0 NA intron (ENSMUSG00000043639.15, intron 1 of 13) protein_coding-intron (ENSMUSG00000043639.15, intron 1 of 13) 3220 ENSMUSG00000089807.1 ENSMUSG00000089807 ENSMUST00000161107 Gm16298 processed_pseudogene Interval_117085 chr4 119441753 119442938 + 0 NA intron (ENSMUSG00000070806.5, intron 2 of 4) protein_coding-intron (ENSMUSG00000070806.5, intron 4 of 7) 19473 ENSMUSG00000070806.5 ENSMUSG00000070806 ENSMUST00000129150 Zmynd12 protein_coding Interval_94013 chr2 80699713 80699907 + 0 NA Intergenic Intergenic -7779 ENSMUSG00000077404.1 ENSMUSG00000077404 ENSMUST00000104216 Gm25420 snoRNA Interval_162855 chr9 10448846 10450315 + 0 NA intron (ENSMUSG00000039488.15, intron 2 of 20) protein_coding-intron (ENSMUSG00000039488.15, intron 2 of 24) -26355 ENSMUSG00000111648.1 ENSMUSG00000111648 ENSMUST00000217614 Gm46103 processed_pseudogene Interval_112555 chr4 43087508 43088287 + 0 NA intron (ENSMUSG00000028456.18, intron 1 of 1) protein_coding-intron (ENSMUSG00000028456.18, intron 1 of 38) 41855 ENSMUSG00000096974.2 ENSMUSG00000096974 ENSMUST00000211208 Gm26881 antisense Interval_100007 chr2 166440036 166440704 + 0 NA Intergenic Intergenic -7081 ENSMUSG00000085129.1 ENSMUSG00000085129 ENSMUST00000127920 5031425F14Rik lincRNA Interval_73628 chr17 41570154 41570433 + 0 NA Intergenic Intergenic 93395 ENSMUSG00000117001.1 ENSMUSG00000117001 ENSMUST00000232972 Gm49858 processed_pseudogene Interval_20727 chr10 120559226 120559579 + 0 NA Intergenic Intergenic -46135 ENSMUSG00000088924.1 ENSMUSG00000088924 ENSMUST00000158299 Gm24298 snoRNA Interval_46333 chr13 64031037 64032122 + 0 NA Intergenic Intergenic 57622 ENSMUSG00000033122.14 ENSMUSG00000033122 ENSMUST00000222810 Hsd17b3 protein_coding Interval_120079 chr4 141681331 141683035 + 0 NA exon (ENSMUSG00000078515.4, exon 10 of 10) protein_coding-exon (ENSMUSG00000078515.4, exon 10 of 10) 3416 ENSMUSG00000040715.12 ENSMUSG00000040715 ENSMUST00000105782 Rsc1a1 protein_coding Interval_37786 chr12 71977068 71977413 + 0 NA intron (ENSMUSG00000034574.10, intron 20 of 25) protein_coding-intron (ENSMUSG00000034574.10, intron 20 of 25) 72019 ENSMUSG00000114155.1 ENSMUSG00000114155 ENSMUST00000221336 Gm7986 processed_pseudogene Interval_165605 chr9 50283635 50284827 + 0 NA Intergenic Intergenic 17586 ENSMUSG00000111359.1 ENSMUSG00000111359 ENSMUST00000214933 Gm39336 lincRNA Interval_117937 chr4 127190679 127192905 + 0 NA intron (ENSMUSG00000042388.14, intron 1 of 11) protein_coding-intron (ENSMUSG00000042388.14, intron 1 of 11) -11514 ENSMUSG00000042388.14 ENSMUSG00000042388 ENSMUST00000137062 Dlgap3 protein_coding Interval_22119 chr11 6454561 6456996 + 0 NA exon (ENSMUSG00000084280.1, exon 1 of 1) processed_pseudogene-exon (ENSMUSG00000084280.1, exon 1 of 1) 127 ENSMUSG00000084280.1 ENSMUSG00000084280 ENSMUST00000118514 Gm11972 processed_pseudogene Interval_22467 chr11 10614791 10614999 + 0 NA Intergenic Intergenic -237813 ENSMUSG00000084045.1 ENSMUSG00000084045 ENSMUST00000118697 Gm11997 processed_pseudogene Interval_61228 chr15 80103353 80103569 + 0 NA intron (ENSMUSG00000022415.12, intron 1 of 2) protein_coding-intron (ENSMUSG00000022415.12, intron 1 of 3) 5591 ENSMUSG00000022415.12 ENSMUSG00000022415 ENSMUST00000135727 Syngr1 protein_coding Interval_58413 chr15 34295772 34296215 + 0 NA Intergenic Intergenic -7123 ENSMUSG00000084738.2 ENSMUSG00000084738 ENSMUST00000122789 Gm25809 snoRNA Interval_116698 chr4 116703732 116704245 + 0 NA TTS (ENSMUSG00000028690.4) protein_coding-TTS (ENSMUSG00000028690.4) 4300 ENSMUSG00000028690.4 ENSMUSG00000028690 ENSMUST00000143330 Mmachc protein_coding Interval_62002 chr15 85813252 85813710 + 0 NA Intergenic Intergenic -1822 ENSMUSG00000064284.12 ENSMUSG00000064284 ENSMUST00000154814 Cdpf1 protein_coding Interval_131427 chr5 137115985 137116520 + 0 NA promoter-TSS (ENSMUSG00000043279.9) protein_coding-promoter-TSS (ENSMUSG00000043279.9) -43 ENSMUSG00000043279.9 ENSMUSG00000043279 ENSMUST00000152207 Trim56 protein_coding Interval_89334 chr2 19430707 19432733 + 0 NA intron (ENSMUSG00000087103.1, intron 1 of 1) antisense-intron (ENSMUSG00000087103.1, intron 1 of 1) 263 ENSMUSG00000087103.1 ENSMUSG00000087103 ENSMUST00000137714 Gm13344 antisense Interval_12981 chr10 8880962 8881923 + 0 NA intron (ENSMUSG00000015305.6, intron 1 of 3) protein_coding-intron (ENSMUSG00000015305.6, intron 1 of 19) -3195 ENSMUSG00000097597.2 ENSMUSG00000097597 ENSMUST00000180770 Gm26674 antisense Interval_36899 chr12 55051679 55052286 + 0 NA intron (ENSMUSG00000062198.5, intron 1 of 2) protein_coding-intron (ENSMUSG00000062198.5, intron 6 of 7) 14935 ENSMUSG00000113467.1 ENSMUSG00000113467 ENSMUST00000222661 Gm46350 processed_pseudogene Interval_4804 chr1 79380393 79381480 + 0 NA Intergenic Intergenic 59106 ENSMUSG00000050711.7 ENSMUSG00000050711 ENSMUST00000049972 Scg2 protein_coding Interval_25697 chr11 50849810 50852275 + 0 NA promoter-TSS (ENSMUSG00000000617.14) protein_coding-promoter-TSS (ENSMUSG00000000617.14) 357 ENSMUSG00000000617.14 ENSMUSG00000000617 ENSMUST00000126890 Grm6 protein_coding Interval_115130 chr4 91297684 91297997 + 0 NA intron (ENSMUSG00000008489.18, intron 2 of 3) protein_coding-intron (ENSMUSG00000008489.18, intron 2 of 6) 58842 ENSMUSG00000008489.18 ENSMUSG00000008489 ENSMUST00000176151 Elavl2 protein_coding Interval_69367 chr16 92504664 92504859 + 0 NA intron (ENSMUSG00000022949.9, intron 1 of 5) protein_coding-intron (ENSMUSG00000022949.9, intron 1 of 5) 19025 ENSMUSG00000022949.9 ENSMUSG00000022949 ENSMUST00000023670 Clic6 protein_coding Interval_67584 chr16 51453800 51454124 + 0 NA Intergenic Intergenic -37014 ENSMUSG00000116855.1 ENSMUSG00000116855 ENSMUST00000232313 Gm49608 processed_pseudogene Interval_81518 chr18 61332961 61333333 + 0 NA intron (ENSMUSG00000033871.14, intron 1 of 11) protein_coding-intron (ENSMUSG00000033871.14, intron 2 of 12) 58124 ENSMUSG00000024575.16 ENSMUSG00000024575 ENSMUST00000135688 Pde6a protein_coding Interval_58054 chr15 27482480 27483981 + 0 NA intron (ENSMUSG00000022265.7, intron 1 of 11) protein_coding-intron (ENSMUSG00000022265.7, intron 1 of 11) 4224 ENSMUSG00000115568.1 ENSMUSG00000115568 ENSMUST00000227393 Tiaf2 TEC Interval_22280 chr11 8512981 8513559 + 0 NA intron (ENSMUSG00000020422.14, intron 16 of 30) protein_coding-intron (ENSMUSG00000020422.14, intron 16 of 30) -129417 ENSMUSG00000083553.1 ENSMUSG00000083553 ENSMUST00000117240 Gm11989 processed_pseudogene Interval_37832 chr12 72343685 72344103 + 0 NA intron (ENSMUSG00000021087.18, intron 1 of 8) protein_coding-intron (ENSMUSG00000021087.18, intron 1 of 8) -98141 ENSMUSG00000021090.16 ENSMUSG00000021090 ENSMUST00000221282 Lrrc9 protein_coding Interval_152010 chr7 128246544 128247882 + 0 NA promoter-TSS (ENSMUSG00000030782.17) protein_coding-promoter-TSS (ENSMUSG00000030782.17) -805 ENSMUSG00000030782.17 ENSMUSG00000030782 ENSMUST00000170115 Tgfb1i1 protein_coding Interval_133788 chr6 12214284 12214553 + 0 NA Intergenic Intergenic 85792 ENSMUSG00000108209.1 ENSMUSG00000108209 ENSMUST00000203296 Gm32222 processed_pseudogene Interval_65305 chr16 21392219 21393242 + 0 NA Intergenic Intergenic -59601 ENSMUSG00000116632.1 ENSMUSG00000116632 ENSMUST00000231972 Magef1 transcribed_processed_pseudogene Interval_119893 chr4 140722170 140722827 + 0 NA exon (ENSMUSG00000040945.13, exon 13 of 13) protein_coding-exon (ENSMUSG00000040945.13, exon 13 of 13) 5455 ENSMUSG00000093071.1 ENSMUSG00000093071 ENSMUST00000175330 Gm25951 miRNA Interval_95239 chr2 105100111 105101016 + 0 NA intron (ENSMUSG00000074987.9, intron 2 of 3) antisense-intron (ENSMUSG00000074987.9, intron 2 of 6) 8545 ENSMUSG00000079175.1 ENSMUSG00000079175 ENSMUST00000111107 Gm11060 protein_coding Interval_30946 chr11 97343515 97344431 + 0 NA intron (ENSMUSG00000070337.4, intron 6 of 10) protein_coding-intron (ENSMUSG00000070337.4, intron 6 of 10) 8104 ENSMUSG00000070337.4 ENSMUSG00000070337 ENSMUST00000162544 Gpr179 protein_coding Interval_148679 chr7 84088214 84089255 + 0 NA Intergenic Intergenic -2232 ENSMUSG00000052353.13 ENSMUSG00000052353 ENSMUST00000147578 Cemip protein_coding Interval_54951 chr14 76451268 76451675 + 0 NA intron (ENSMUSG00000022010.19, intron 3 of 4) protein_coding-intron (ENSMUSG00000022010.19, intron 1 of 2) 32643 ENSMUSG00000022010.19 ENSMUSG00000022010 ENSMUST00000133224 Tsc22d1 protein_coding Interval_150042 chr7 105344158 105344373 + 0 NA Intergenic Intergenic -1995 ENSMUSG00000043948.2 ENSMUSG00000043948 ENSMUST00000057528 Olfr691 protein_coding Interval_98410 chr2 152155032 152156867 + 0 NA Intergenic Intergenic 12388 ENSMUSG00000068079.5 ENSMUSG00000068079 ENSMUST00000089112 Tcf15 protein_coding Interval_35188 chr12 17912139 17913188 + 0 NA intron (ENSMUSG00000113642.1, intron 1 of 1) transcribed_unprocessed_pseudogene-intron (ENSMUSG00000113642.1, intron 1 of 1) 10274 ENSMUSG00000114025.1 ENSMUSG00000114025 ENSMUST00000221489 Gm49331 unprocessed_pseudogene Interval_145271 chr7 31072258 31072657 + 0 NA promoter-TSS (ENSMUSG00000057092.12) protein_coding-promoter-TSS (ENSMUSG00000057092.12) 4188 ENSMUSG00000057092.12 ENSMUSG00000057092 ENSMUST00000170456 Fxyd3 protein_coding Interval_122123 chr5 17573812 17575343 + 0 NA promoter-TSS (ENSMUSG00000028780.13) protein_coding-promoter-TSS (ENSMUSG00000028780.13) -189 ENSMUSG00000028780.13 ENSMUSG00000028780 ENSMUST00000115271 Sema3c protein_coding Interval_99854 chr2 165337151 165337427 + 0 NA Intergenic Intergenic -25647 ENSMUSG00000017670.16 ENSMUSG00000017670 ENSMUST00000128690 Elmo2 protein_coding Interval_53607 chr14 59870489 59870710 + 0 NA intron (ENSMUSG00000021983.16, intron 24 of 35) protein_coding-intron (ENSMUSG00000021983.16, intron 24 of 35) 169892 ENSMUSG00000087286.1 ENSMUSG00000087286 ENSMUST00000132939 Gm9013 processed_pseudogene Interval_44995 chr13 51214092 51214409 + 0 NA Intergenic Intergenic -8139 ENSMUSG00000113521.1 ENSMUSG00000113521 ENSMUST00000222129 Gm29787 processed_pseudogene Interval_90025 chr2 27389823 27390333 + 0 NA intron (ENSMUSG00000009621.18, intron 1 of 27) protein_coding-intron (ENSMUSG00000009621.18, intron 1 of 27) -11774 ENSMUSG00000076364.1 ENSMUSG00000076364 ENSMUST00000102409 Gm24049 miRNA Interval_157247 chr8 68419928 68421305 + 0 NA intron (ENSMUSG00000036356.15, intron 5 of 6) protein_coding-intron (ENSMUSG00000036356.15, intron 4 of 9) -36532 ENSMUSG00000087489.1 ENSMUSG00000087489 ENSMUST00000132076 Gm15656 antisense Interval_40165 chr12 102181595 102182243 + 0 NA intron (ENSMUSG00000041771.14, intron 2 of 16) protein_coding-intron (ENSMUSG00000041771.14, intron 2 of 16) -52013 ENSMUSG00000090050.1 ENSMUSG00000090050 ENSMUST00000160954 Gm16339 antisense Interval_95462 chr2 109821397 109821753 + 0 NA Intergenic Intergenic -29041 ENSMUSG00000083915.1 ENSMUSG00000083915 ENSMUST00000120873 Gm13932 processed_pseudogene Interval_46475 chr13 66440866 66441685 + 0 NA promoter-TSS (ENSMUSG00000074832.11) protein_coding-promoter-TSS (ENSMUSG00000074832.11) -157 ENSMUSG00000074832.11 ENSMUSG00000074832 ENSMUST00000172579 2410141K09Rik protein_coding Interval_135209 chr6 37558139 37558713 + 0 NA TTS (ENSMUSG00000038641.12) protein_coding-TTS (ENSMUSG00000038641.12) 17012 ENSMUSG00000106889.1 ENSMUSG00000106889 ENSMUST00000201541 Gm7463 processed_pseudogene Interval_119449 chr4 137684940 137685278 + 0 NA intron (ENSMUSG00000041351.16, intron 2 of 10) protein_coding-intron (ENSMUSG00000041351.16, intron 2 of 24) 20355 ENSMUSG00000041351.16 ENSMUSG00000041351 ENSMUST00000144059 Rap1gap protein_coding Interval_138294 chr6 87002304 87003487 + 0 NA exon (ENSMUSG00000057230.14, exon 21 of 21) protein_coding-exon (ENSMUSG00000057230.14, exon 21 of 21) -6985 ENSMUSG00000029993.16 ENSMUSG00000029993 ENSMUST00000204103 Nfu1 protein_coding Interval_55067 chr14 77646732 77649249 + 0 NA intron (ENSMUSG00000022012.9, intron 10 of 13) protein_coding-intron (ENSMUSG00000022012.9, intron 14 of 18) -14130 ENSMUSG00000115363.1 ENSMUSG00000115363 ENSMUST00000227098 Gm49003 antisense Interval_93842 chr2 77375445 77375998 + 0 NA Intergenic Intergenic 40362 ENSMUSG00000082006.1 ENSMUSG00000082006 ENSMUST00000122325 Gm13649 processed_pseudogene Interval_80835 chr18 48123203 48123440 + 0 NA Intergenic Intergenic -53299 ENSMUSG00000118097.1 ENSMUSG00000118097 ENSMUST00000236601 Gm5237 processed_pseudogene Interval_17750 chr10 79892440 79893488 + 0 NA TTS (ENSMUSG00000061780.6) protein_coding-TTS (ENSMUSG00000061780.6) 2111 ENSMUSG00000061780.6 ENSMUSG00000061780 ENSMUST00000061653 Cfd protein_coding Interval_20808 chr10 121156387 121157095 + 0 NA Intergenic Intergenic 4788 ENSMUSG00000112431.1 ENSMUSG00000112431 ENSMUST00000218151 Gm10741 TEC Interval_172427 chrX 19312650 19312871 + 0 NA Intergenic Intergenic -42241 ENSMUSG00000077277.1 ENSMUSG00000077277 ENSMUST00000104089 Gm22783 snRNA Interval_88838 chr2 11552642 11554386 + 0 NA intron (ENSMUSG00000026773.19, intron 1 of 11) protein_coding-intron (ENSMUSG00000026773.19, intron 1 of 14) 408 ENSMUSG00000026773.19 ENSMUSG00000026773 ENSMUST00000145970 Pfkfb3 protein_coding Interval_67942 chr16 59950240 59950696 + 0 NA intron (ENSMUSG00000055540.15, intron 4 of 8) protein_coding-intron (ENSMUSG00000055540.15, intron 10 of 17) 311259 ENSMUSG00000116894.1 ENSMUSG00000116894 ENSMUST00000232302 4930547E14Rik processed_transcript Interval_17002 chr10 70367540 70369642 + 0 NA Intergenic Intergenic 30289 ENSMUSG00000112676.1 ENSMUSG00000112676 ENSMUST00000219977 Gm20108 processed_pseudogene Interval_103056 chr3 34759998 34761706 + 0 NA Intergenic Intergenic -11223 ENSMUSG00000106519.1 ENSMUSG00000106519 ENSMUST00000197492 Gm38509 lincRNA Interval_170453 chr9 108078833 108080378 + 0 NA promoter-TSS (ENSMUSG00000032591.15) protein_coding-promoter-TSS (ENSMUSG00000032591.15) -230 ENSMUSG00000041528.15 ENSMUSG00000041528 ENSMUST00000159372 Rnf123 protein_coding Interval_71884 chr17 26715328 26716833 + 0 NA intron (ENSMUSG00000048249.14, intron 1 of 3) protein_coding-intron (ENSMUSG00000048249.14, intron 1 of 8) 39923 ENSMUSG00000015575.15 ENSMUSG00000015575 ENSMUST00000167352 Atp6v0e protein_coding Interval_162929 chr9 13497273 13498659 + 0 NA intron (ENSMUSG00000031925.17, intron 1 of 4) protein_coding-intron (ENSMUSG00000031925.17, intron 1 of 4) -21970 ENSMUSG00000111223.1 ENSMUSG00000111223 ENSMUST00000213741 Gm47089 TEC Interval_60313 chr15 72788494 72788737 + 0 NA intron (ENSMUSG00000047921.17, intron 16 of 21) protein_coding-intron (ENSMUSG00000047921.17, intron 16 of 21) 21709 ENSMUSG00000106847.1 ENSMUSG00000106847 ENSMUST00000202826 Peg13 sense_intronic Interval_1526 chr1 24720816 24721795 + 0 NA intron (ENSMUSG00000073725.8, intron 7 of 15) protein_coding-intron (ENSMUSG00000073725.8, intron 7 of 15) 42675 ENSMUSG00000073725.8 ENSMUSG00000073725 ENSMUST00000190195 Lmbrd1 protein_coding Interval_102780 chr3 30995151 30996332 + 0 NA promoter-TSS (ENSMUSG00000037643.14) protein_coding-promoter-TSS (ENSMUSG00000037643.14) 21092 ENSMUSG00000102741.1 ENSMUSG00000102741 ENSMUST00000193442 Gm2979 processed_pseudogene Interval_136647 chr6 56931444 56932091 + 0 NA intron (ENSMUSG00000071893.7, intron 4 of 4) protein_coding-intron (ENSMUSG00000071893.7, intron 4 of 4) -8043 ENSMUSG00000029780.14 ENSMUSG00000029780 ENSMUST00000127725 Nt5c3 protein_coding Interval_152191 chr7 130546685 130547897 + 0 NA promoter-TSS (ENSMUSG00000040331.16) protein_coding-promoter-TSS (ENSMUSG00000040331.16) -8083 ENSMUSG00000040331.16 ENSMUSG00000040331 ENSMUST00000161414 Nsmce4a protein_coding Interval_148868 chr7 89481658 89481936 + 0 NA Intergenic Intergenic -28210 ENSMUSG00000030623.4 ENSMUSG00000030623 ENSMUST00000208814 Prss23os antisense Interval_29003 chr11 79857706 79858070 + 0 NA intron (ENSMUSG00000086474.2, intron 2 of 4) lincRNA-intron (ENSMUSG00000086474.2, intron 2 of 4) 35827 ENSMUSG00000065283.1 ENSMUSG00000065283 ENSMUST00000083349 Gm24454 snoRNA Interval_113635 chr4 57162947 57165992 + 0 NA Intergenic Intergenic -7602 ENSMUSG00000085967.1 ENSMUSG00000085967 ENSMUST00000152074 Gm12530 antisense Interval_46810 chr13 71001321 71001883 + 0 NA Intergenic Intergenic 70124 ENSMUSG00000102303.1 ENSMUSG00000102303 ENSMUST00000194509 Gm38191 TEC Interval_113661 chr4 57362254 57363602 + 0 NA intron (ENSMUSG00000087044.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000087044.1, intron 1 of 1) 1364 ENSMUSG00000087044.1 ENSMUSG00000087044 ENSMUST00000143574 1700042G15Rik lincRNA Interval_57821 chr15 21923612 21923847 + 0 NA Intergenic Intergenic 23770 ENSMUSG00000105214.1 ENSMUSG00000105214 ENSMUST00000196112 Gm44373 miRNA Interval_21432 chr10 128575043 128575342 + 0 NA intron (ENSMUSG00000018166.8, intron 16 of 27) protein_coding-intron (ENSMUSG00000018166.8, intron 16 of 27) 9305 ENSMUSG00000098592.1 ENSMUSG00000098592 ENSMUST00000184111 Mir6917 miRNA Interval_150093 chr7 105774587 105775165 + 0 NA intron (ENSMUSG00000036862.15, intron 1 of 6) protein_coding-intron (ENSMUSG00000036862.15, intron 1 of 20) 12676 ENSMUSG00000036862.15 ENSMUSG00000036862 ENSMUST00000154659 Dchs1 protein_coding Interval_15861 chr10 58485523 58485801 + 0 NA intron (ENSMUSG00000003226.7, intron 23 of 28) protein_coding-intron (ENSMUSG00000003226.7, intron 23 of 28) -12543 ENSMUSG00000038010.9 ENSMUSG00000038010 ENSMUST00000217992 Ccdc138 protein_coding Interval_20723 chr10 120538665 120538852 + 0 NA Intergenic Intergenic -62289 ENSMUSG00000056758.14 ENSMUSG00000056758 ENSMUST00000159310 Hmga2 protein_coding Interval_134742 chr6 31125298 31127315 + 0 NA intron (ENSMUSG00000044471.12, intron 2 of 5) lincRNA-intron (ENSMUSG00000044471.12, intron 3 of 3) -15386 ENSMUSG00000104030.1 ENSMUSG00000104030 ENSMUST00000195672 5330406M23Rik TEC Interval_7782 chr1 133650213 133651544 + 0 NA intron (ENSMUSG00000102976.6, intron 1 of 4) protein_coding-intron (ENSMUSG00000116275.1, intron 2 of 16) 10440 ENSMUSG00000094410.8 ENSMUSG00000094410 ENSMUST00000179598 Gm38394 protein_coding Interval_144744 chr7 27960392 27960772 + 0 NA TTS (ENSMUSG00000063047.9) protein_coding-TTS (ENSMUSG00000063047.9) -10819 ENSMUSG00000074243.4 ENSMUSG00000074243 ENSMUST00000118212 Gm10651 processed_pseudogene Interval_93159 chr2 70725381 70725591 + 0 NA exon (ENSMUSG00000041997.16, exon 13 of 20) protein_coding-exon (ENSMUSG00000041997.16, exon 13 of 20) -7582 ENSMUSG00000041997.16 ENSMUSG00000041997 ENSMUST00000124629 Tlk1 protein_coding Interval_152904 chr7 139615976 139616790 + 0 NA promoter-TSS (ENSMUSG00000049571.18) protein_coding-promoter-TSS (ENSMUSG00000049571.18) -9725 ENSMUSG00000049571.18 ENSMUSG00000049571 ENSMUST00000138129 Cfap46 protein_coding Interval_57159 chr15 7079755 7080056 + 0 NA Intergenic Intergenic -10709 ENSMUSG00000054263.12 ENSMUSG00000054263 ENSMUST00000171588 Lifr protein_coding Interval_101475 chr2 181659082 181660092 + 0 NA TTS (ENSMUSG00000108976.1) protein_coding-TTS (ENSMUSG00000108976.1) 2553 ENSMUSG00000108976.1 ENSMUSG00000108976 ENSMUST00000207856 Gm29797 protein_coding Interval_37183 chr12 59230421 59230748 + 0 NA Intergenic Intergenic 6592 ENSMUSG00000098820.1 ENSMUSG00000098820 ENSMUST00000184357 Gm27284 miRNA Interval_101048 chr2 174566797 174567078 + 0 NA Intergenic Intergenic -24293 ENSMUSG00000082353.1 ENSMUSG00000082353 ENSMUST00000118738 Vmn1r-ps1 processed_pseudogene Interval_118720 chr4 133360920 133361712 + 0 NA Intergenic Intergenic -8460 ENSMUSG00000092745.1 ENSMUSG00000092745 ENSMUST00000175004 Mir5122 miRNA Interval_96062 chr2 119520366 119520621 + 0 NA exon (ENSMUSG00000048647.9, exon 13 of 13) protein_coding-exon (ENSMUSG00000048647.9, exon 13 of 13) -11264 ENSMUSG00000082369.1 ENSMUSG00000082369 ENSMUST00000119645 Gm14208 processed_pseudogene Interval_157362 chr8 69874101 69874825 + 0 NA Intergenic Intergenic 13224 ENSMUSG00000044006.8 ENSMUSG00000044006 ENSMUST00000057831 Cilp2 protein_coding Interval_110634 chr4 5515338 5516715 + 0 NA Intergenic Intergenic 35197 ENSMUSG00000087099.1 ENSMUSG00000087099 ENSMUST00000131675 Gm11782 lincRNA Interval_82183 chr18 68530780 68530993 + 0 NA Intergenic Intergenic -28536 ENSMUSG00000117811.1 ENSMUSG00000117811 ENSMUST00000238121 Gm29677 lincRNA Interval_167230 chr9 66368750 66369211 + 0 NA intron (ENSMUSG00000038664.16, intron 1 of 1) protein_coding-intron (ENSMUSG00000038664.16, intron 1 of 77) -8238 ENSMUSG00000084437.1 ENSMUSG00000084437 ENSMUST00000122488 Gm23428 snRNA Interval_95898 chr2 118196435 118197748 + 0 NA intron (ENSMUSG00000027344.14, intron 10 of 11) protein_coding-intron (ENSMUSG00000027344.14, intron 10 of 11) 51691 ENSMUSG00000093368.1 ENSMUSG00000093368 ENSMUST00000175627 Gm22800 miRNA Interval_53385 chr14 56824777 56825099 + 0 NA Intergenic Intergenic 12098 ENSMUSG00000114420.1 ENSMUSG00000114420 ENSMUST00000225694 Gm48906 processed_pseudogene Interval_135169 chr6 37170385 37171151 + 0 NA intron (ENSMUSG00000038665.15, intron 1 of 32) protein_coding-intron (ENSMUSG00000038665.15, intron 2 of 32) 129416 ENSMUSG00000038665.15 ENSMUSG00000038665 ENSMUST00000136457 Dgki protein_coding Interval_150951 chr7 116658870 116659600 + 0 NA Intergenic Intergenic 32250 ENSMUSG00000088234.1 ENSMUSG00000088234 ENSMUST00000157609 Gm25423 snRNA Interval_13695 chr10 21100701 21102717 + 0 NA intron (ENSMUSG00000111102.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000111102.1, intron 1 of 1) 1149 ENSMUSG00000111102.1 ENSMUSG00000111102 ENSMUST00000215135 Gm48189 lincRNA Interval_112532 chr4 42916649 42917770 + 0 NA promoter-TSS (ENSMUSG00000036062.13) protein_coding-promoter-TSS (ENSMUSG00000036062.13) 549 ENSMUSG00000036062.13 ENSMUSG00000036062 ENSMUST00000131234 Phf24 protein_coding Interval_82379 chr18 73488761 73490316 + 0 NA Intergenic Intergenic 44012 ENSMUSG00000065922.1 ENSMUSG00000065922 ENSMUST00000083988 n-R5-8s1 rRNA Interval_82728 chr18 76235158 76235439 + 0 NA Intergenic Intergenic -6440 ENSMUSG00000118004.1 ENSMUSG00000118004 ENSMUST00000238024 BC026513 lincRNA Interval_63450 chr15 101163141 101164838 + 0 NA Intergenic Intergenic -10078 ENSMUSG00000000532.11 ENSMUSG00000000532 ENSMUST00000000544 Acvr1b protein_coding Interval_116607 chr4 116025229 116025556 + 0 NA Intergenic Intergenic -25455 ENSMUSG00000034171.13 ENSMUSG00000034171 ENSMUST00000150614 Faah protein_coding Interval_96486 chr2 124931525 124931757 + 0 NA Intergenic Intergenic -148714 ENSMUSG00000035183.14 ENSMUSG00000035183 ENSMUST00000149963 Slc24a5 protein_coding Interval_17141 chr10 72484214 72484498 + 0 NA Intergenic Intergenic -43194 ENSMUSG00000077642.1 ENSMUSG00000077642 ENSMUST00000104454 Gm24984 snoRNA Interval_165320 chr9 46282331 46283402 + 0 NA promoter-TSS (ENSMUSG00000032077.5) protein_coding-promoter-TSS (ENSMUSG00000032077.5) -8482 ENSMUSG00000032077.5 ENSMUSG00000032077 ENSMUST00000213932 Bud13 protein_coding Interval_164005 chr9 30824147 30824571 + 0 NA Intergenic Intergenic -42880 ENSMUSG00000111867.1 ENSMUSG00000111867 ENSMUST00000213576 Gm31013 lincRNA Interval_140518 chr6 119198760 119200729 + 0 NA promoter-TSS (ENSMUSG00000041477.14) protein_coding-promoter-TSS (ENSMUSG00000041477.14) -2854 ENSMUSG00000051331.16 ENSMUSG00000051331 ENSMUST00000239204 Cacna1c protein_coding Interval_170847 chr9 111146747 111147700 + 0 NA intron (ENSMUSG00000032497.19, intron 2 of 27) protein_coding-intron (ENSMUSG00000032497.19, intron 3 of 14) -26993 ENSMUSG00000032497.19 ENSMUSG00000032497 ENSMUST00000196906 Lrrfip2 protein_coding Interval_29762 chr11 86637568 86638026 + 0 NA intron (ENSMUSG00000018171.9, intron 6 of 11) protein_coding-intron (ENSMUSG00000018171.9, intron 6 of 11) -6771 ENSMUSG00000083992.1 ENSMUSG00000083992 ENSMUST00000117851 Gm11478 processed_pseudogene Interval_103613 chr3 51190517 51190801 + 0 NA Intergenic Intergenic -41258 ENSMUSG00000103313.1 ENSMUSG00000103313 ENSMUST00000195382 Gm38357 TEC Interval_169293 chr9 96195781 96197212 + 0 NA exon (ENSMUSG00000032411.15, exon 1 of 13) protein_coding-exon (ENSMUSG00000032411.15, exon 1 of 13) -22634 ENSMUSG00000103611.1 ENSMUSG00000103611 ENSMUST00000192006 Gm37195 TEC Interval_133012 chr5 149271493 149271717 + 0 NA intron (ENSMUSG00000060063.9, intron 1 of 4) protein_coding-intron (ENSMUSG00000060063.9, intron 1 of 4) 9618 ENSMUSG00000064704.1 ENSMUSG00000064704 ENSMUST00000082770 n-R5s180 rRNA Interval_61860 chr15 84723599 84724458 + 0 NA intron (ENSMUSG00000078954.9, intron 1 of 11) protein_coding-intron (ENSMUSG00000078954.9, intron 1 of 12) -3762 ENSMUSG00000116396.1 ENSMUSG00000116396 ENSMUST00000229841 Gm20556 lincRNA Interval_151871 chr7 127228744 127229129 + 0 NA intron (ENSMUSG00000000486.13, intron 1 of 5) protein_coding-intron (ENSMUSG00000000486.13, intron 1 of 5) 4194 ENSMUSG00000000486.13 ENSMUSG00000000486 ENSMUST00000205570 Septin1 protein_coding Interval_159051 chr8 89072771 89073990 + 0 NA Intergenic Intergenic -29218 ENSMUSG00000031665.7 ENSMUSG00000031665 ENSMUST00000034090 Sall1 protein_coding Interval_118316 chr4 130260028 130260865 + 0 NA intron (ENSMUSG00000023232.17, intron 6 of 9) protein_coding-intron (ENSMUSG00000023232.17, intron 6 of 9) 15099 ENSMUSG00000023232.17 ENSMUSG00000023232 ENSMUST00000154846 Serinc2 protein_coding Interval_64240 chr16 9640267 9640560 + 0 NA intron (ENSMUSG00000059003.12, intron 11 of 13) protein_coding-intron (ENSMUSG00000059003.12, intron 9 of 11) 354510 ENSMUSG00000059003.12 ENSMUSG00000059003 ENSMUST00000197242 Grin2a protein_coding Interval_166496 chr9 60088028 60088733 + 0 NA intron (ENSMUSG00000032289.15, intron 6 of 16) protein_coding-intron (ENSMUSG00000032289.15, intron 1 of 11) -46201 ENSMUSG00000088090.1 ENSMUSG00000088090 ENSMUST00000157465 Gm23668 rRNA Interval_30874 chr11 97002888 97003463 + 0 NA Intergenic Intergenic -15558 ENSMUSG00000038560.7 ENSMUSG00000038560 ENSMUST00000107622 Sp6 protein_coding Interval_98453 chr2 152484191 152484605 + 0 NA Intergenic Intergenic 5740 ENSMUSG00000027468.2 ENSMUSG00000027468 ENSMUST00000028966 Defb22 protein_coding Interval_144627 chr7 27218634 27218980 + 0 NA intron (ENSMUSG00000003752.9, intron 2 of 6) protein_coding-intron (ENSMUSG00000003752.9, intron 2 of 6) 9854 ENSMUSG00000003752.9 ENSMUSG00000003752 ENSMUST00000206441 Itpkc protein_coding Interval_71344 chr17 22431278 22431619 + 0 NA intron (ENSMUSG00000071266.13, intron 2 of 2) protein_coding-intron (ENSMUSG00000071266.13, intron 2 of 6) -19675 ENSMUSG00000071266.13 ENSMUSG00000071266 ENSMUST00000167740 Zfp946 protein_coding Interval_58794 chr15 38111373 38111610 + 0 NA Intergenic Intergenic 32389 ENSMUSG00000115771.1 ENSMUSG00000115771 ENSMUST00000228698 Gm49312 bidirectional_promoter_lncRNA Interval_172636 chrX 38730243 38731022 + 0 NA intron (ENSMUSG00000085635.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000085635.1, intron 1 of 1) 7130 ENSMUSG00000085635.1 ENSMUSG00000085635 ENSMUST00000140021 Gm14565 lincRNA Interval_103359 chr3 40403223 40403430 + 0 NA Intergenic Intergenic 106448 ENSMUSG00000037884.6 ENSMUSG00000037884 ENSMUST00000202778 1700017G19Rik lincRNA Interval_44587 chr13 46525534 46526310 + 0 NA intron (ENSMUSG00000021373.16, intron 2 of 9) protein_coding-intron (ENSMUSG00000021373.16, intron 2 of 12) 7238 ENSMUSG00000087913.1 ENSMUSG00000087913 ENSMUST00000157288 Gm24915 rRNA Interval_34385 chr12 3774531 3774918 + 0 NA intron (ENSMUSG00000071454.13, intron 1 of 2) protein_coding-intron (ENSMUSG00000071454.13, intron 17 of 18) -12578 ENSMUSG00000092286.1 ENSMUSG00000092286 ENSMUST00000173847 Dtnbos antisense Interval_113564 chr4 56728531 56729821 + 0 NA Intergenic Intergenic -10894 ENSMUSG00000096930.1 ENSMUSG00000096930 ENSMUST00000181745 Gm26657 protein_coding Interval_31359 chr11 100254099 100255147 + 0 NA Intergenic Intergenic -5721 ENSMUSG00000053797.10 ENSMUSG00000053797 ENSMUST00000007280 Krt16 protein_coding Interval_125632 chr5 72901648 72903459 + 0 NA Intergenic Intergenic -12115 ENSMUSG00000036087.18 ENSMUSG00000036087 ENSMUST00000145939 Slain2 protein_coding Interval_130937 chr5 134153541 134153829 + 0 NA intron (ENSMUSG00000061979.8, intron 10 of 10) protein_coding-intron (ENSMUSG00000061979.8, intron 10 of 10) 14575 ENSMUSG00000061979.8 ENSMUSG00000061979 ENSMUST00000156574 Rcc1l protein_coding Interval_92345 chr2 59169916 59172093 + 0 NA intron (ENSMUSG00000026991.20, intron 1 of 4) protein_coding-intron (ENSMUSG00000026991.20, intron 1 of 21) 9077 ENSMUSG00000026991.20 ENSMUSG00000026991 ENSMUST00000124127 Pkp4 protein_coding Interval_9029 chr1 153180246 153181014 + 0 NA intron (ENSMUSG00000026479.13, intron 2 of 3) protein_coding-intron (ENSMUSG00000026479.13, intron 2 of 23) -53396 ENSMUSG00000026479.13 ENSMUSG00000026479 ENSMUST00000188831 Lamc2 protein_coding Interval_130741 chr5 130075779 130076490 + 0 NA intron (ENSMUSG00000034118.15, intron 1 of 5) protein_coding-intron (ENSMUSG00000034118.15, intron 1 of 5) -17455 ENSMUSG00000034118.15 ENSMUSG00000034118 ENSMUST00000128335 Tpst1 protein_coding Interval_84091 chr19 7159956 7160837 + 0 NA intron (ENSMUSG00000036278.7, intron 3 of 10) protein_coding-intron (ENSMUSG00000036278.7, intron 3 of 10) 45379 ENSMUSG00000024767.11 ENSMUSG00000024767 ENSMUST00000123743 Otub1 protein_coding Interval_139249 chr6 97546925 97547549 + 0 NA TTS (ENSMUSG00000064724.1) snoRNA-TTS (ENSMUSG00000064724.1) 330 ENSMUSG00000064724.1 ENSMUSG00000064724 ENSMUST00000082790 Gm25852 snoRNA Interval_158134 chr8 79083686 79084021 + 0 NA intron (ENSMUSG00000071064.15, intron 4 of 13) protein_coding-intron (ENSMUSG00000071064.15, intron 4 of 14) 55266 ENSMUSG00000071064.15 ENSMUSG00000071064 ENSMUST00000129613 Zfp827 protein_coding Interval_138979 chr6 93978231 93980342 + 0 NA intron (ENSMUSG00000045095.16, intron 1 of 24) protein_coding-intron (ENSMUSG00000045095.16, intron 1 of 21) -66782 ENSMUSG00000045095.16 ENSMUSG00000045095 ENSMUST00000203034 Magi1 protein_coding Interval_104931 chr3 79110284 79110732 + 0 NA exon (ENSMUSG00000062232.14, exon 5 of 5) protein_coding-exon (ENSMUSG00000062232.14, exon 5 of 5) -85866 ENSMUSG00000064693.1 ENSMUSG00000064693 ENSMUST00000082759 Gm24150 snRNA Interval_59480 chr15 53837119 53838139 + 0 NA intron (ENSMUSG00000058656.13, intron 2 of 2) protein_coding-intron (ENSMUSG00000058656.13, intron 2 of 4) -47277 ENSMUSG00000072584.2 ENSMUSG00000072584 ENSMUST00000100666 Gm7489 protein_coding Interval_165947 chr9 54873132 54873537 + 0 NA intron (ENSMUSG00000032293.8, intron 2 of 21) protein_coding-intron (ENSMUSG00000032293.8, intron 2 of 21) -24139 ENSMUSG00000032293.8 ENSMUSG00000032293 ENSMUST00000213482 Ireb2 protein_coding Interval_100631 chr2 170613540 170614002 + 0 NA Intergenic Intergenic -11754 ENSMUSG00000043583.1 ENSMUSG00000043583 ENSMUST00000062355 4930470P17Rik protein_coding Interval_42420 chr13 13413537 13416890 + 0 NA Intergenic Intergenic -1934 ENSMUSG00000113444.1 ENSMUSG00000113444 ENSMUST00000221774 Gm48672 processed_pseudogene Interval_82952 chr18 79953343 79953605 + 0 NA Intergenic Intergenic -5532 ENSMUSG00000117813.1 ENSMUSG00000117813 ENSMUST00000237811 Gm5823 processed_pseudogene Interval_50809 chr14 19970577 19971583 + 0 NA intron (ENSMUSG00000043004.13, intron 1 of 3) protein_coding-intron (ENSMUSG00000043004.13, intron 2 of 5) 6104 ENSMUSG00000043004.13 ENSMUSG00000043004 ENSMUST00000161247 Gng2 protein_coding Interval_44516 chr13 45577732 45578014 + 0 NA intron (ENSMUSG00000046876.16, intron 5 of 6) protein_coding-intron (ENSMUSG00000046876.16, intron 6 of 7) 31720 ENSMUSG00000000253.13 ENSMUSG00000000253 ENSMUST00000222227 Gmpr protein_coding Interval_139539 chr6 100870136 100870539 + 0 NA TTS (ENSMUSG00000052144.8) protein_coding-TTS (ENSMUSG00000052144.8) 17852 ENSMUSG00000052144.8 ENSMUSG00000052144 ENSMUST00000203067 Ppp4r2 protein_coding Interval_174539 chrX 157454394 157454819 + 0 NA intron (ENSMUSG00000071708.11, intron 8 of 9) protein_coding-intron (ENSMUSG00000071708.11, intron 9 of 10) 6255 ENSMUSG00000071708.11 ENSMUSG00000071708 ENSMUST00000123770 Sms protein_coding Interval_72037 chr17 27668067 27668535 + 0 NA intron (ENSMUSG00000040276.15, intron 1 of 9) protein_coding-intron (ENSMUSG00000040276.15, intron 1 of 9) 12713 ENSMUSG00000040276.15 ENSMUSG00000040276 ENSMUST00000231854 Pacsin1 protein_coding Interval_143883 chr7 16913723 16915041 + 0 NA TTS (ENSMUSG00000019370.10) protein_coding-TTS (ENSMUSG00000019370.10) 7868 ENSMUSG00000043017.9 ENSMUSG00000043017 ENSMUST00000144408 Ptgir protein_coding Interval_158986 chr8 88467830 88468060 + 0 NA Intergenic Intergenic 76824 ENSMUSG00000110280.1 ENSMUSG00000110280 ENSMUST00000211701 Gm45497 processed_pseudogene Interval_16377 chr10 62577811 62579153 + 0 NA promoter-TSS (ENSMUSG00000036955.16) protein_coding-promoter-TSS (ENSMUSG00000036955.16) 788 ENSMUSG00000105203.1 ENSMUSG00000105203 ENSMUST00000199616 4933428P19Rik antisense Interval_137262 chr6 70865959 70866218 + 0 NA intron (ENSMUSG00000031668.14, intron 2 of 16) protein_coding-intron (ENSMUSG00000031668.14, intron 2 of 16) 10644 ENSMUSG00000065750.1 ENSMUSG00000065750 ENSMUST00000083816 Gm23346 snoRNA Interval_38054 chr12 75362712 75363100 + 0 NA intron (ENSMUSG00000046768.13, intron 1 of 3) protein_coding-intron (ENSMUSG00000046768.13, intron 1 of 4) 53875 ENSMUSG00000048982.3 ENSMUSG00000048982 ENSMUST00000051079 Gphb5 protein_coding Interval_129561 chr5 120938366 120939063 + 0 NA Intergenic Intergenic -6541 ENSMUSG00000118628.1 ENSMUSG00000118628 ENSMUST00000239370 AC015535.1 unprocessed_pseudogene Interval_52250 chr14 41024034 41024477 + 0 NA Intergenic Intergenic -19722 ENSMUSG00000021792.15 ENSMUSG00000021792 ENSMUST00000152837 Prxl2a protein_coding Interval_107977 chr3 118433495 118435470 + 0 NA promoter-TSS (ENSMUSG00000093000.1) miRNA-promoter-TSS (ENSMUSG00000093000.1) -239 ENSMUSG00000093000.1 ENSMUSG00000093000 ENSMUST00000175259 Gm24155 miRNA Interval_23036 chr11 19149573 19149823 + 0 NA Intergenic Intergenic -32264 ENSMUSG00000102585.1 ENSMUSG00000102585 ENSMUST00000193150 Gm37439 TEC Interval_97082 chr2 131105002 131106209 + 0 NA Intergenic Intergenic -18840 ENSMUSG00000027322.11 ENSMUSG00000027322 ENSMUST00000110226 Siglec1 protein_coding Interval_49768 chr13 114827059 114827924 + 0 NA intron (ENSMUSG00000015536.14, intron 6 of 6) protein_coding-intron (ENSMUSG00000015536.14, intron 6 of 6) 9197 ENSMUSG00000015536.14 ENSMUSG00000015536 ENSMUST00000164871 Mocs2 protein_coding Interval_32848 chr11 111894580 111894795 + 0 NA Intergenic Intergenic -93811 ENSMUSG00000086752.1 ENSMUSG00000086752 ENSMUST00000124855 Gm11674 lincRNA Interval_150854 chr7 115783656 115785214 + 0 NA intron (ENSMUSG00000051910.13, intron 3 of 11) protein_coding-intron (ENSMUSG00000051910.13, intron 3 of 16) 61716 ENSMUSG00000051910.13 ENSMUSG00000051910 ENSMUST00000206912 Sox6 protein_coding Interval_25010 chr11 43020274 43020978 + 0 NA Intergenic Intergenic -15120 ENSMUSG00000055456.1 ENSMUSG00000055456 ENSMUST00000069051 Gm9972 TEC Interval_124615 chr5 52387473 52387765 + 0 NA intron (ENSMUSG00000045790.10, intron 10 of 11) protein_coding-intron (ENSMUSG00000045790.10, intron 10 of 11) 17503 ENSMUSG00000045790.10 ENSMUSG00000045790 ENSMUST00000213027 Ccdc149 protein_coding Interval_7970 chr1 134940157 134941777 + 0 NA intron (ENSMUSG00000073557.12, intron 1 of 24) protein_coding-intron (ENSMUSG00000073557.12, intron 1 of 23) -21651 ENSMUSG00000026429.9 ENSMUSG00000026429 ENSMUST00000139617 Ube2t protein_coding Interval_34028 chr11 120098313 120099407 + 0 NA promoter-TSS (ENSMUSG00000025377.14) protein_coding-promoter-TSS (ENSMUSG00000025377.14) -239 ENSMUSG00000078572.3 ENSMUSG00000078572 ENSMUST00000186913 Ndufaf8 protein_coding Interval_32465 chr11 107694495 107694876 + 0 NA TTS (ENSMUSG00000020721.16) protein_coding-TTS (ENSMUSG00000020721.16) 21837 ENSMUSG00000020722.5 ENSMUSG00000020722 ENSMUST00000021065 Cacng1 protein_coding Interval_104135 chr3 58926283 58926721 + 0 NA Intergenic Intergenic -49128 ENSMUSG00000087815.1 ENSMUSG00000087815 ENSMUST00000157190 Gm22491 snRNA Interval_81446 chr18 60803242 60803965 + 0 NA promoter-TSS (ENSMUSG00000024610.15) protein_coding-promoter-TSS (ENSMUSG00000024610.15) -302 ENSMUSG00000024610.15 ENSMUSG00000024610 ENSMUST00000238179 Cd74 protein_coding Interval_65790 chr16 28868981 28869183 + 0 NA intron (ENSMUSG00000051065.9, intron 1 of 1) protein_coding-intron (ENSMUSG00000051065.9, intron 1 of 1) -32715 ENSMUSG00000051065.9 ENSMUSG00000051065 ENSMUST00000232571 Mb21d2 protein_coding Interval_16709 chr10 67134202 67134517 + 0 NA intron (ENSMUSG00000037876.17, intron 1 of 25) protein_coding-intron (ENSMUSG00000037876.17, intron 1 of 25) -51389 ENSMUSG00000037876.17 ENSMUSG00000037876 ENSMUST00000173236 Jmjd1c protein_coding Interval_167404 chr9 68761501 68762215 + 0 NA intron (ENSMUSG00000032238.17, intron 1 of 5) protein_coding-intron (ENSMUSG00000032238.17, intron 1 of 10) 107967 ENSMUSG00000032238.17 ENSMUSG00000032238 ENSMUST00000113624 Rora protein_coding Interval_93426 chr2 72985359 72986139 + 0 NA intron (ENSMUSG00000063714.15, intron 1 of 2) protein_coding-intron (ENSMUSG00000079286.1, intron 1 of 1) 967 ENSMUSG00000079286.1 ENSMUSG00000079286 ENSMUST00000112062 Gm11084 protein_coding Interval_14219 chr10 29084393 29085102 + 0 NA Intergenic Intergenic -49294 ENSMUSG00000111542.1 ENSMUSG00000111542 ENSMUST00000213962 Gm30619 unprocessed_pseudogene Interval_49066 chr13 107669765 107671318 + 0 NA Intergenic Intergenic -16856 ENSMUSG00000102000.6 ENSMUSG00000102000 ENSMUST00000188490 1700006H21Rik lincRNA Interval_124007 chr5 37132023 37132242 + 0 NA intron (ENSMUSG00000117286.1, intron 15 of 33) protein_coding-intron (ENSMUSG00000063646.18, intron 15 of 19) 18348 ENSMUSG00000113373.1 ENSMUSG00000113373 ENSMUST00000212997 Jakmip1 protein_coding Interval_25042 chr11 43452741 43453326 + 0 NA Intergenic Intergenic 10452 ENSMUSG00000084307.1 ENSMUSG00000084307 ENSMUST00000121374 Gm12151 processed_pseudogene Interval_27079 chr11 62731140 62732245 + 0 NA exon (ENSMUSG00000005267.13, exon 1 of 2) protein_coding-exon (ENSMUSG00000005267.13, exon 1 of 2) -3026 ENSMUSG00000005267.13 ENSMUSG00000005267 ENSMUST00000127732 Zfp287 protein_coding Interval_84844 chr19 17403834 17404156 + 0 NA Intergenic Intergenic 6558 ENSMUSG00000024712.9 ENSMUSG00000024712 ENSMUST00000146171 Rfk protein_coding Interval_81749 chr18 64363924 64364501 + 0 NA intron (ENSMUSG00000045991.19, intron 1 of 1) protein_coding-intron (ENSMUSG00000045991.19, intron 1 of 1) 24192 ENSMUSG00000045991.19 ENSMUSG00000045991 ENSMUST00000175965 Onecut2 protein_coding Interval_36332 chr12 41400462 41400846 + 0 NA intron (ENSMUSG00000056899.10, intron 3 of 5) protein_coding-intron (ENSMUSG00000056899.10, intron 4 of 6) -9438 ENSMUSG00000113454.1 ENSMUSG00000113454 ENSMUST00000221495 Gm47373 antisense Interval_75188 chr17 64492688 64493343 + 0 NA Intergenic Intergenic 52209 ENSMUSG00000098984.1 ENSMUSG00000098984 ENSMUST00000185032 Mir6420 miRNA Interval_107586 chr3 108707346 108707998 + 0 NA intron (ENSMUSG00000027883.15, intron 1 of 1) protein_coding-intron (ENSMUSG00000027883.15, intron 2 of 14) -1236 ENSMUSG00000098800.1 ENSMUSG00000098800 ENSMUST00000184260 Gm27244 antisense Interval_32829 chr11 111296199 111296830 + 0 NA Intergenic Intergenic 20414 ENSMUSG00000082272.1 ENSMUSG00000082272 ENSMUST00000121873 Gm11675 processed_pseudogene Interval_156153 chr8 45225992 45226858 + 0 NA Intergenic Intergenic 35606 ENSMUSG00000031645.4 ENSMUSG00000031645 ENSMUST00000210622 F11 protein_coding Interval_100177 chr2 167482555 167484735 + 0 NA TTS (ENSMUSG00000047030.15) protein_coding-TTS (ENSMUSG00000047030.15) 9200 ENSMUSG00000047030.15 ENSMUSG00000047030 ENSMUST00000154770 Spata2 protein_coding Interval_191 JH792828.1 287146 287622 + 0 NA NA NA NA NA Interval_122548 chr5 23750705 23750970 + 0 NA promoter-TSS (ENSMUSG00000057541.14) protein_coding-promoter-TSS (ENSMUSG00000057541.14) 24831 ENSMUSG00000057541.14 ENSMUSG00000057541 ENSMUST00000195909 Pus7 protein_coding Interval_102183 chr3 19252949 19253709 + 0 NA intron (ENSMUSG00000069094.12, intron 3 of 8) protein_coding-intron (ENSMUSG00000069094.12, intron 3 of 12) 25549 ENSMUSG00000087108.1 ENSMUSG00000087108 ENSMUST00000141455 Gm16093 antisense Interval_116101 chr4 107679365 107680573 + 0 NA intron (ENSMUSG00000028610.16, intron 2 of 3) protein_coding-intron (ENSMUSG00000028610.16, intron 2 of 3) 3611 ENSMUSG00000028610.16 ENSMUSG00000028610 ENSMUST00000131508 Dmrtb1 protein_coding Interval_88879 chr2 11986953 11987164 + 0 NA Intergenic Intergenic 86976 ENSMUSG00000103542.1 ENSMUSG00000103542 ENSMUST00000193884 Gm34768 unprocessed_pseudogene Interval_117667 chr4 125457458 125457912 + 0 NA Intergenic Intergenic -33015 ENSMUSG00000001985.9 ENSMUSG00000001985 ENSMUST00000030676 Grik3 protein_coding Interval_113655 chr4 57282324 57282950 + 0 NA intron (ENSMUSG00000038764.14, intron 1 of 2) protein_coding-intron (ENSMUSG00000038764.14, intron 1 of 25) -17459 ENSMUSG00000085654.1 ENSMUSG00000085654 ENSMUST00000129102 Gm12536 lincRNA Interval_171240 chr9 115547681 115548990 + 0 NA Intergenic Intergenic 78383 ENSMUSG00000094630.1 ENSMUSG00000094630 ENSMUST00000082810 n-R5s92 rRNA Interval_137167 chr6 68845055 68845266 + 0 NA Intergenic Intergenic -9853 ENSMUSG00000076534.6 ENSMUSG00000076534 ENSMUST00000103335 Igkv12-89 IG_V_gene Interval_84589 chr19 13815594 13815899 + 0 NA promoter-TSS (ENSMUSG00000045395.4) protein_coding-promoter-TSS (ENSMUSG00000045395.4) 3701 ENSMUSG00000045395.4 ENSMUSG00000045395 ENSMUST00000055672 Olfr1499 protein_coding Interval_120092 chr4 141772974 141773505 + 0 NA intron (ENSMUSG00000040697.10, intron 1 of 2) protein_coding-intron (ENSMUSG00000040697.10, intron 7 of 14) 17692 ENSMUSG00000040697.10 ENSMUSG00000040697 ENSMUST00000153880 Dnajc16 protein_coding Interval_126769 chr5 92785713 92786374 + 0 NA intron (ENSMUSG00000029381.16, intron 2 of 11) protein_coding-intron (ENSMUSG00000029381.16, intron 2 of 10) 2519 ENSMUSG00000089268.1 ENSMUSG00000089268 ENSMUST00000158643 Mir1961 miRNA Interval_5900 chr1 93063711 93064082 + 0 NA intron (ENSMUSG00000014602.15, intron 15 of 48) protein_coding-intron (ENSMUSG00000014602.15, intron 14 of 46) -36691 ENSMUSG00000014602.15 ENSMUSG00000014602 ENSMUST00000186861 Kif1a protein_coding Interval_71150 chr17 20298225 20299452 + 0 NA Intergenic Intergenic -13285 ENSMUSG00000091656.2 ENSMUSG00000091656 ENSMUST00000233933 Vmn2r106 protein_coding Interval_136869 chr6 62002078 62002290 + 0 NA intron (ENSMUSG00000039578.17, intron 10 of 10) protein_coding-intron (ENSMUSG00000039578.17, intron 9 of 9) 27086 ENSMUSG00000108246.1 ENSMUSG00000108246 ENSMUST00000203440 Gm43896 TEC Interval_65760 chr16 27905825 27906687 + 0 NA intron (ENSMUSG00000116654.1, intron 2 of 4) lincRNA-intron (ENSMUSG00000116654.1, intron 2 of 4) 56326 ENSMUSG00000116654.1 ENSMUSG00000116654 ENSMUST00000231532 Gm10823 lincRNA Interval_127785 chr5 107814148 107815287 + 0 NA TTS (ENSMUSG00000011831.16) protein_coding-TTS (ENSMUSG00000011831.16) -7010 ENSMUSG00000106288.1 ENSMUSG00000106288 ENSMUST00000198605 Gm43593 TEC Interval_155314 chr8 31175815 31176966 + 0 NA Intergenic Intergenic -7696 ENSMUSG00000031578.5 ENSMUSG00000031578 ENSMUST00000209991 Mak16 protein_coding Interval_96520 chr2 125256091 125258342 + 0 NA intron (ENSMUSG00000027203.15, intron 6 of 6) protein_coding-intron (ENSMUSG00000027203.15, intron 5 of 5) 9316 ENSMUSG00000027203.15 ENSMUSG00000027203 ENSMUST00000133211 Dut protein_coding Interval_146957 chr7 56254661 56254837 + 0 NA intron (ENSMUSG00000030450.11, intron 2 of 2) protein_coding-intron (ENSMUSG00000030450.11, intron 1 of 23) -11599 ENSMUSG00000108773.1 ENSMUSG00000108773 ENSMUST00000206278 Gm44506 antisense Interval_127495 chr5 104474234 104475895 + 0 NA intron (ENSMUSG00000034462.9, intron 2 of 8) protein_coding-intron (ENSMUSG00000034462.9, intron 2 of 14) -17707 ENSMUSG00000034462.9 ENSMUSG00000034462 ENSMUST00000133540 Pkd2 protein_coding Interval_86188 chr19 37659640 37660245 + 0 NA intron (ENSMUSG00000053799.8, intron 21 of 22) protein_coding-intron (ENSMUSG00000053799.8, intron 20 of 21) -25639 ENSMUSG00000062432.4 ENSMUSG00000062432 ENSMUST00000073391 Cyp26c1 protein_coding Interval_122424 chr5 22520198 22520462 + 0 NA exon (ENSMUSG00000029012.11, exon 1 of 1) protein_coding-exon (ENSMUSG00000029012.11, exon 1 of 1) 2336 ENSMUSG00000029012.11 ENSMUSG00000029012 ENSMUST00000138248 Orc5 protein_coding Interval_91149 chr2 35479814 35480788 + 0 NA Intergenic Intergenic 3604 ENSMUSG00000081841.1 ENSMUSG00000081841 ENSMUST00000119445 Gm13444 processed_pseudogene Interval_21185 chr10 127102342 127102726 + 0 NA intron (ENSMUSG00000040462.13, intron 5 of 14) protein_coding-intron (ENSMUSG00000040462.13, intron 5 of 13) 18581 ENSMUSG00000040462.13 ENSMUSG00000040462 ENSMUST00000218798 Os9 protein_coding Interval_78812 chr18 20755512 20756806 + 0 NA Intergenic Intergenic -9755 ENSMUSG00000056124.5 ENSMUSG00000056124 ENSMUST00000070080 B4galt6 protein_coding Interval_121791 chr5 8258377 8259167 + 0 NA intron (ENSMUSG00000040537.17, intron 3 of 4) protein_coding-intron (ENSMUSG00000040537.17, intron 3 of 28) 16049 ENSMUSG00000088103.1 ENSMUSG00000088103 ENSMUST00000157478 Gm23993 snoRNA Interval_144376 chr7 24776106 24777436 + 0 NA promoter-TSS (ENSMUSG00000054169.7) protein_coding-promoter-TSS (ENSMUSG00000054169.7) -510 ENSMUSG00000054169.7 ENSMUSG00000054169 ENSMUST00000206380 Ceacam10 protein_coding Interval_17543 chr10 77621799 77622757 + 0 NA promoter-TSS (ENSMUSG00000009293.17) protein_coding-promoter-TSS (ENSMUSG00000009293.17) -45 ENSMUSG00000009293.17 ENSMUSG00000009293 ENSMUST00000173360 Ube2g2 protein_coding Interval_156916 chr8 61664481 61665368 + 0 NA intron (ENSMUSG00000058056.16, intron 10 of 21) protein_coding-intron (ENSMUSG00000058056.16, intron 10 of 19) -149024 ENSMUSG00000058056.16 ENSMUSG00000058056 ENSMUST00000123523 Palld protein_coding Interval_114803 chr4 85370599 85371232 + 0 NA intron (ENSMUSG00000028488.15, intron 3 of 7) protein_coding-intron (ENSMUSG00000028488.15, intron 3 of 8) -5426 ENSMUSG00000028488.15 ENSMUSG00000028488 ENSMUST00000133109 Sh3gl2 protein_coding Interval_24384 chr11 32851740 32852743 + 0 NA Intergenic Intergenic -27679 ENSMUSG00000020270.9 ENSMUSG00000020270 ENSMUST00000020508 Smim23 protein_coding Interval_162607 chr9 6337867 6338070 + 0 NA intron (ENSMUSG00000032006.15, intron 5 of 5) protein_coding-intron (ENSMUSG00000032006.15, intron 5 of 6) -68122 ENSMUSG00000047619.5 ENSMUSG00000047619 ENSMUST00000051706 Ddi1 protein_coding Interval_136629 chr6 56808408 56809067 + 0 NA Intergenic Intergenic 11146 ENSMUSG00000108080.1 ENSMUSG00000108080 ENSMUST00000203397 Gm10209 TEC Interval_151537 chr7 123349794 123350632 + 0 NA intron (ENSMUSG00000030766.15, intron 1 of 19) protein_coding-intron (ENSMUSG00000030766.15, intron 1 of 18) 19638 ENSMUSG00000030766.15 ENSMUSG00000030766 ENSMUST00000205805 Arhgap17 protein_coding Interval_129507 chr5 120622377 120622568 + 0 NA TTS (ENSMUSG00000029599.13) protein_coding-TTS (ENSMUSG00000029599.13) 5149 ENSMUSG00000107191.1 ENSMUSG00000107191 ENSMUST00000202387 Gm43579 antisense Interval_42495 chr13 14114576 14116136 + 0 NA intron (ENSMUSG00000039219.18, intron 1 of 8) protein_coding-intron (ENSMUSG00000039219.18, intron 2 of 22) 3499 ENSMUSG00000077802.1 ENSMUSG00000077802 ENSMUST00000104614 n-R5s52 rRNA Interval_89149 chr2 17415097 17415596 + 0 NA intron (ENSMUSG00000053702.16, intron 8 of 12) protein_coding-intron (ENSMUSG00000053702.16, intron 4 of 6) -24338 ENSMUSG00000053702.16 ENSMUSG00000053702 ENSMUST00000130725 Nebl protein_coding Interval_153419 chr7 144581560 144582597 + 0 NA TTS (ENSMUSG00000073778.2) antisense-TTS (ENSMUSG00000073778.2) 385 ENSMUSG00000031077.7 ENSMUSG00000031077 ENSMUST00000033394 Fadd protein_coding Interval_129730 chr5 122003447 122003897 + 0 NA intron (ENSMUSG00000042589.18, intron 1 of 6) protein_coding-intron (ENSMUSG00000042589.18, intron 2 of 22) -21658 ENSMUSG00000105795.1 ENSMUSG00000105795 ENSMUST00000198001 Gm3970 antisense Interval_105112 chr3 81496759 81497689 + 0 NA Intergenic Intergenic 59601 ENSMUSG00000102710.1 ENSMUSG00000102710 ENSMUST00000192718 Gm4857 processed_pseudogene Interval_88057 chr19 58571651 58573066 + 0 NA Intergenic Intergenic -33971 ENSMUSG00000100001.1 ENSMUSG00000100001 ENSMUST00000187629 1810007D17Rik lincRNA Interval_29142 chr11 80613490 80614647 + 0 NA intron (ENSMUSG00000035441.14, intron 16 of 20) protein_coding-intron (ENSMUSG00000035441.14, intron 16 of 21) -104962 ENSMUSG00000085078.1 ENSMUSG00000085078 ENSMUST00000133400 C030013C21Rik sense_intronic Interval_115161 chr4 92493274 92494468 + 0 NA Intergenic Intergenic -34680 ENSMUSG00000085209.1 ENSMUSG00000085209 ENSMUST00000130501 Gm12637 lincRNA Interval_11818 chr1 185768968 185769210 + 0 NA Intergenic Intergenic 24286 ENSMUSG00000103799.1 ENSMUSG00000103799 ENSMUST00000195210 Gm38093 lincRNA Interval_1264 chr1 18658567 18659555 + 0 NA Intergenic Intergenic -49367 ENSMUSG00000101306.1 ENSMUSG00000101306 ENSMUST00000189030 Gm5252 processed_pseudogene Interval_110286 chr3 155882378 155883144 + 0 NA Intergenic Intergenic -20587 ENSMUSG00000102443.1 ENSMUSG00000102443 ENSMUST00000195740 Gm37102 processed_pseudogene Interval_116413 chr4 111645540 111646102 + 0 NA intron (ENSMUSG00000061298.14, intron 3 of 3) protein_coding-intron (ENSMUSG00000061298.14, intron 11 of 12) -74242 ENSMUSG00000034401.16 ENSMUSG00000034401 ENSMUST00000132802 Spata6 protein_coding Interval_134466 chr6 28940598 28941305 + 0 NA Intergenic Intergenic -40683 ENSMUSG00000092090.2 ENSMUSG00000092090 ENSMUST00000164104 Gm3294 lincRNA Interval_76265 chr17 78601562 78602229 + 0 NA exon (ENSMUSG00000024076.10, exon 9 of 14) protein_coding-exon (ENSMUSG00000024076.10, exon 9 of 14) 27967 ENSMUSG00000024076.10 ENSMUSG00000024076 ENSMUST00000232864 Vit protein_coding Interval_150193 chr7 107779381 107780060 + 0 NA Intergenic Intergenic -1219 ENSMUSG00000109402.1 ENSMUSG00000109402 ENSMUST00000208448 Gm45040 antisense Interval_140215 chr6 115601084 115602570 + 0 NA promoter-TSS (ENSMUSG00000000439.9) protein_coding-promoter-TSS (ENSMUSG00000000439.9) -6343 ENSMUSG00000107949.1 ENSMUSG00000107949 ENSMUST00000204720 Gm44157 TEC Interval_137135 chr6 67931341 67931827 + 0 NA Intergenic Intergenic 10956 ENSMUSG00000096632.2 ENSMUSG00000096632 ENSMUST00000196768 Igkv9-124 IG_V_gene Interval_154931 chr8 25150588 25151720 + 0 NA Intergenic Intergenic 8079 ENSMUSG00000099142.1 ENSMUSG00000099142 ENSMUST00000184998 Mir8108 miRNA Interval_75886 chr17 72686423 72686713 + 0 NA Intergenic Intergenic 13877 ENSMUSG00000098193.1 ENSMUSG00000098193 ENSMUST00000183172 Gm26963 processed_pseudogene Interval_17843 chr10 80350236 80350767 + 0 NA Intergenic Intergenic -5263 ENSMUSG00000043822.18 ENSMUSG00000043822 ENSMUST00000138705 Adamtsl5 protein_coding Interval_170649 chr9 109894430 109895746 + 0 NA Intergenic Intergenic 5445 ENSMUSG00000098490.1 ENSMUSG00000098490 ENSMUST00000184522 Mir7089 miRNA Interval_96113 chr2 119843267 119844532 + 0 NA Intergenic Intergenic 34504 ENSMUSG00000081056.1 ENSMUSG00000081056 ENSMUST00000120952 Gm13998 processed_pseudogene Interval_173961 chrX 117086985 117087827 + 0 NA Intergenic Intergenic 72649 ENSMUSG00000067441.5 ENSMUSG00000067441 ENSMUST00000122446 H2ab1 protein_coding Interval_77762 chr18 3329028 3329301 + 0 NA intron (ENSMUSG00000063889.16, intron 1 of 8) protein_coding-intron (ENSMUSG00000063889.16, intron 1 of 8) -7574 ENSMUSG00000097746.2 ENSMUSG00000097746 ENSMUST00000234647 Gm6225 processed_transcript Interval_77398 chr17 88451838 88452471 + 0 NA intron (ENSMUSG00000034998.18, intron 1 of 6) protein_coding-intron (ENSMUSG00000034998.18, intron 1 of 5) 11419 ENSMUSG00000034998.18 ENSMUSG00000034998 ENSMUST00000141052 Foxn2 protein_coding Interval_162269 chr8 126564764 126565207 + 0 NA Intergenic Intergenic -1985 ENSMUSG00000097060.1 ENSMUSG00000097060 ENSMUST00000181773 Gm26759 antisense Interval_13957 chr10 25023723 25024983 + 0 NA intron (ENSMUSG00000111970.1, intron 2 of 3) lincRNA-intron (ENSMUSG00000111970.1, intron 1 of 1) 24333 ENSMUSG00000111970.1 ENSMUSG00000111970 ENSMUST00000218700 Gm47715 lincRNA Interval_155155 chr8 27110469 27110720 + 0 NA exon (ENSMUSG00000031486.15, exon 6 of 19) protein_coding-exon (ENSMUSG00000031486.15, exon 6 of 19) -6775 ENSMUSG00000031486.15 ENSMUSG00000031486 ENSMUST00000179351 Adgra2 protein_coding Interval_6021 chr1 94041538 94041967 + 0 NA intron (ENSMUSG00000026285.7, intron 1 of 4) protein_coding-intron (ENSMUSG00000026285.7, intron 1 of 4) 10801 ENSMUSG00000026285.7 ENSMUSG00000026285 ENSMUST00000027507 Pdcd1 protein_coding Interval_163083 chr9 15073285 15073831 + 0 NA intron (ENSMUSG00000031936.9, intron 12 of 19) protein_coding-intron (ENSMUSG00000031936.9, intron 12 of 19) -29761 ENSMUSG00000031934.14 ENSMUSG00000031934 ENSMUST00000169288 Panx1 protein_coding Interval_105073 chr3 80975420 80975955 + 0 NA Intergenic Intergenic 12727 ENSMUSG00000105092.1 ENSMUSG00000105092 ENSMUST00000200360 Gm42468 lincRNA Interval_31236 chr11 99059336 99060419 + 0 NA Intergenic Intergenic 15464 ENSMUSG00000017607.9 ENSMUSG00000017607 ENSMUST00000123303 Tns4 protein_coding Interval_86280 chr19 38352723 38353566 + 0 NA Intergenic Intergenic -10530 ENSMUSG00000118381.1 ENSMUSG00000118381 ENSMUST00000237671 Gm50150 processed_pseudogene Interval_125814 chr5 74531171 74532247 + 0 NA promoter-TSS (ENSMUSG00000062110.14) protein_coding-promoter-TSS (ENSMUSG00000062110.14) -44238 ENSMUSG00000107165.1 ENSMUSG00000107165 ENSMUST00000201412 Gm43747 TEC Interval_168615 chr9 84178426 84178789 + 0 NA Intergenic Intergenic -9748 ENSMUSG00000077666.1 ENSMUSG00000077666 ENSMUST00000104478 Gm26146 snRNA Interval_149687 chr7 100651046 100651481 + 0 NA intron (ENSMUSG00000030701.17, intron 6 of 8) protein_coding-intron (ENSMUSG00000030701.17, intron 6 of 8) 11093 ENSMUSG00000030701.17 ENSMUSG00000030701 ENSMUST00000208812 Plekhb1 protein_coding Interval_170000 chr9 103523956 103525862 + 0 NA intron (ENSMUSG00000111278.1, intron 1 of 2) protein_coding-intron (ENSMUSG00000042757.16, intron 2 of 4) 2010 ENSMUSG00000089497.1 ENSMUSG00000089497 ENSMUST00000158872 Gm26360 snRNA Interval_173037 chrX 66770510 66771009 + 0 NA Intergenic Intergenic 6059 ENSMUSG00000077127.1 ENSMUSG00000077127 ENSMUST00000103939 Mir743 miRNA Interval_131741 chr5 139585415 139585871 + 0 NA Intergenic Intergenic 41745 ENSMUSG00000029546.12 ENSMUSG00000029546 ENSMUST00000174792 Uncx protein_coding Interval_41302 chr12 112588163 112589598 + 0 NA promoter-TSS (ENSMUSG00000037679.9) protein_coding-promoter-TSS (ENSMUSG00000037679.9) -15777 ENSMUSG00000037679.9 ENSMUSG00000037679 ENSMUST00000222275 Inf2 protein_coding Interval_36587 chr12 50980091 50982216 + 0 NA Intergenic Intergenic 23720 ENSMUSG00000112685.1 ENSMUSG00000112685 ENSMUST00000218991 Gm40421 lincRNA Interval_13349 chr10 16528791 16529173 + 0 NA Intergenic Intergenic -55286 ENSMUSG00000112929.1 ENSMUSG00000112929 ENSMUST00000217766 Gm47729 lincRNA Interval_66083 chr16 31487142 31487589 + 0 NA Intergenic Intergenic 17439 ENSMUSG00000116572.1 ENSMUSG00000116572 ENSMUST00000232608 Gm49695 lincRNA Interval_127557 chr5 105241210 105242759 + 0 NA intron (ENSMUSG00000079362.5, intron 10 of 10) protein_coding-intron (ENSMUSG00000079362.5, intron 10 of 10) -20008 ENSMUSG00000105096.1 ENSMUSG00000105096 ENSMUST00000196634 Gbp10 protein_coding Interval_114824 chr4 85914441 85915207 + 0 NA intron (ENSMUSG00000066113.16, intron 2 of 3) protein_coding-intron (ENSMUSG00000066113.16, intron 2 of 3) 4913 ENSMUSG00000088122.2 ENSMUSG00000088122 ENSMUST00000157497 Gm26069 misc_RNA Interval_2403 chr1 39015745 39016311 + 0 NA Intergenic Intergenic 23350 ENSMUSG00000103046.1 ENSMUSG00000103046 ENSMUST00000194994 Gm37309 TEC Interval_12502 chr1 194490476 194490701 + 0 NA Intergenic Intergenic -127630 ENSMUSG00000026640.12 ENSMUSG00000026640 ENSMUST00000124785 Plxna2 protein_coding Interval_134036 chr6 17905736 17906582 + 0 NA TTS (ENSMUSG00000098570.1) misc_RNA-TTS (ENSMUSG00000098570.1) 452 ENSMUSG00000098570.1 ENSMUSG00000098570 ENSMUST00000184157 Gm27444 misc_RNA Interval_11569 chr1 182792332 182792998 + 0 NA intron (ENSMUSG00000038576.15, intron 2 of 2) protein_coding-intron (ENSMUSG00000038576.15, intron 1 of 7) 28109 ENSMUSG00000038576.15 ENSMUSG00000038576 ENSMUST00000085724 Susd4 protein_coding Interval_30432 chr11 94327729 94328722 + 0 NA promoter-TSS (ENSMUSG00000020864.13) protein_coding-promoter-TSS (ENSMUSG00000020864.13) -5228 ENSMUSG00000020864.13 ENSMUSG00000020864 ENSMUST00000124087 Ankrd40 protein_coding Interval_111774 chr4 28461283 28461928 + 0 NA Intergenic Intergenic 24853 ENSMUSG00000082359.1 ENSMUSG00000082359 ENSMUST00000117755 Gm11908 processed_pseudogene Interval_32164 chr11 105842741 105843220 + 0 NA intron (ENSMUSG00000053580.16, intron 10 of 25) protein_coding-intron (ENSMUSG00000053580.16, intron 10 of 25) -32925 ENSMUSG00000081270.1 ENSMUSG00000081270 ENSMUST00000119992 Gm11653 processed_pseudogene Interval_20442 chr10 117643276 117643446 + 0 NA intron (ENSMUSG00000020183.11, intron 2 of 3) protein_coding-intron (ENSMUSG00000020183.11, intron 2 of 8) 19027 ENSMUSG00000096357.1 ENSMUSG00000096357 ENSMUST00000178844 Gm25709 snRNA Interval_114506 chr4 81627898 81628889 + 0 NA Intergenic Intergenic -68048 ENSMUSG00000083385.1 ENSMUSG00000083385 ENSMUST00000117951 Gm11411 processed_pseudogene Interval_104150 chr3 59109067 59110055 + 0 NA intron (ENSMUSG00000056476.13, intron 15 of 43) protein_coding-intron (ENSMUSG00000056476.13, intron 14 of 42) -7740 ENSMUSG00000050075.8 ENSMUSG00000050075 ENSMUST00000085040 Gpr171 protein_coding Interval_117579 chr4 124811585 124811884 + 0 NA intron (ENSMUSG00000028890.13, intron 3 of 3) protein_coding-intron (ENSMUSG00000028890.13, intron 2 of 10) 9056 ENSMUSG00000028890.13 ENSMUSG00000028890 ENSMUST00000175875 Mtf1 protein_coding Interval_159501 chr8 95113435 95114262 + 0 NA promoter-TSS (ENSMUSG00000031788.14) protein_coding-promoter-TSS (ENSMUSG00000031788.14) 282 ENSMUSG00000110517.1 ENSMUSG00000110517 ENSMUST00000212682 Gm31224 antisense Interval_87946 chr19 57314141 57315280 + 0 NA exon (ENSMUSG00000025085.16, exon 1 of 7) protein_coding-exon (ENSMUSG00000025085.16, exon 1 of 7) 209 ENSMUSG00000025085.16 ENSMUSG00000025085 ENSMUST00000133369 Ablim1 protein_coding Interval_142249 chr6 139928585 139928929 + 0 NA intron (ENSMUSG00000030228.18, intron 18 of 20) protein_coding-intron (ENSMUSG00000030228.18, intron 13 of 15) 98370 ENSMUSG00000107870.1 ENSMUSG00000107870 ENSMUST00000204549 Gm43940 TEC Interval_38362 chr12 77789564 77791181 + 0 NA Intergenic Intergenic 24437 ENSMUSG00000077707.1 ENSMUSG00000077707 ENSMUST00000104519 Gm24070 snoRNA Interval_158722 chr8 85549297 85549487 + 0 NA intron (ENSMUSG00000031701.6, intron 1 of 3) protein_coding-intron (ENSMUSG00000031701.6, intron 3 of 8) 4074 ENSMUSG00000031701.6 ENSMUSG00000031701 ENSMUST00000211630 Dnaja2 protein_coding Interval_98022 chr2 146833925 146835521 + 0 NA intron (ENSMUSG00000087618.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000087618.1, intron 1 of 1) 5009 ENSMUSG00000087618.1 ENSMUSG00000087618 ENSMUST00000139345 Gm14114 lincRNA Interval_66048 chr16 31200060 31201494 + 0 NA intron (ENSMUSG00000049076.12, intron 1 of 23) protein_coding-intron (ENSMUSG00000049076.12, intron 1 of 21) -32813 ENSMUSG00000116946.1 ENSMUSG00000116946 ENSMUST00000232234 Gm41442 lincRNA Interval_111895 chr4 32313468 32313811 + 0 NA intron (ENSMUSG00000040270.16, intron 1 of 1) protein_coding-intron (ENSMUSG00000040270.16, intron 1 of 7) 61878 ENSMUSG00000087049.1 ENSMUSG00000087049 ENSMUST00000133451 Bach2it1 sense_intronic Interval_87659 chr19 54054951 54056182 + 0 NA Intergenic Intergenic 10306 ENSMUSG00000033717.6 ENSMUSG00000033717 ENSMUST00000237285 Adra2a protein_coding Interval_116165 chr4 108326934 108328706 + 0 NA promoter-TSS (ENSMUSG00000048351.14) protein_coding-promoter-TSS (ENSMUSG00000048351.14) -369 ENSMUSG00000048351.14 ENSMUSG00000048351 ENSMUST00000147054 Coa7 protein_coding Interval_136684 chr6 57702468 57703861 + 0 NA promoter-TSS (ENSMUSG00000062190.12) protein_coding-promoter-TSS (ENSMUSG00000062190.12) 77 ENSMUSG00000062190.12 ENSMUSG00000062190 ENSMUST00000153777 Lancl2 protein_coding Interval_88864 chr2 11777024 11778843 + 0 NA promoter-TSS (ENSMUSG00000047909.11) protein_coding-promoter-TSS (ENSMUSG00000047909.11) -383 ENSMUSG00000058594.15 ENSMUSG00000058594 ENSMUST00000151402 Fbh1 protein_coding Interval_19542 chr10 102835627 102836859 + 0 NA intron (ENSMUSG00000112046.1, intron 4 of 5) transcribed_processed_pseudogene-intron (ENSMUSG00000112046.1, intron 4 of 5) 16872 ENSMUSG00000112046.1 ENSMUSG00000112046 ENSMUST00000219699 Gm5175 transcribed_processed_pseudogene Interval_89442 chr2 20693678 20694478 + 0 NA intron (ENSMUSG00000036617.17, intron 5 of 5) protein_coding-intron (ENSMUSG00000036617.17, intron 4 of 18) 19156 ENSMUSG00000086418.1 ENSMUSG00000086418 ENSMUST00000137186 Gm13362 antisense Interval_25152 chr11 44571591 44572564 + 0 NA Intergenic Intergenic -14240 ENSMUSG00000086501.1 ENSMUSG00000086501 ENSMUST00000128652 4930597A21Rik lincRNA Interval_49116 chr13 108169177 108169555 + 0 NA intron (ENSMUSG00000021694.18, intron 3 of 11) protein_coding-intron (ENSMUSG00000021694.18, intron 3 of 11) 10612 ENSMUSG00000021694.18 ENSMUSG00000021694 ENSMUST00000123138 Ercc8 protein_coding Interval_121079 chr4 152690079 152690482 + 0 NA Intergenic Intergenic -7260 ENSMUSG00000073699.3 ENSMUSG00000073699 ENSMUST00000143133 Gm833 lincRNA Interval_88539 chr2 5942129 5943256 + 0 NA promoter-TSS (ENSMUSG00000025815.13) protein_coding-promoter-TSS (ENSMUSG00000025815.13) -30856 ENSMUSG00000025815.13 ENSMUSG00000025815 ENSMUST00000151649 Dhtkd1 protein_coding Interval_159290 chr8 92820942 92821717 + 0 NA Intergenic Intergenic -18855 ENSMUSG00000031740.8 ENSMUSG00000031740 ENSMUST00000211567 Mmp2 protein_coding Interval_164439 chr9 37035384 37036663 + 0 NA intron (ENSMUSG00000035934.16, intron 2 of 4) protein_coding-intron (ENSMUSG00000035934.16, intron 2 of 12) 9624 ENSMUSG00000077401.1 ENSMUSG00000077401 ENSMUST00000104213 n-R5s82 rRNA Interval_1567 chr1 26524622 26525123 + 0 NA Intergenic Intergenic -41961 ENSMUSG00000088111.1 ENSMUSG00000088111 ENSMUST00000157486 Gm24064 snoRNA Interval_45515 chr13 55592000 55593695 + 0 NA promoter-TSS (ENSMUSG00000058569.8) protein_coding-promoter-TSS (ENSMUSG00000058569.8) -329 ENSMUSG00000058569.8 ENSMUSG00000058569 ENSMUST00000225888 Tmed9 protein_coding Interval_120546 chr4 149272763 149273010 + 0 NA intron (ENSMUSG00000063077.15, intron 5 of 49) protein_coding-intron (ENSMUSG00000063077.15, intron 5 of 20) 34806 ENSMUSG00000063077.15 ENSMUSG00000063077 ENSMUST00000132072 Kif1b protein_coding Interval_101241 chr2 179774375 179775549 + 0 NA intron (ENSMUSG00000000305.12, intron 2 of 2) protein_coding-intron (ENSMUSG00000000305.12, intron 2 of 15) -2201 ENSMUSG00000000305.12 ENSMUSG00000000305 ENSMUST00000098996 Cdh4 protein_coding Interval_42343 chr13 12243891 12244078 + 0 NA exon (ENSMUSG00000021311.9, exon 8 of 33) protein_coding-exon (ENSMUSG00000021311.9, exon 8 of 33) 14129 ENSMUSG00000021311.9 ENSMUSG00000021311 ENSMUST00000221290 Mtr protein_coding Interval_15464 chr10 47366621 47367049 + 0 NA Intergenic Intergenic -41163 ENSMUSG00000111072.1 ENSMUSG00000111072 ENSMUST00000217393 Gm9068 processed_pseudogene Interval_61717 chr15 83555016 83556128 + 0 NA promoter-TSS (ENSMUSG00000048755.9) protein_coding-promoter-TSS (ENSMUSG00000048755.9) -207 ENSMUSG00000048755.9 ENSMUSG00000048755 ENSMUST00000230672 Mcat protein_coding Interval_59449 chr15 53236951 53238122 + 0 NA intron (ENSMUSG00000061731.9, intron 1 of 10) protein_coding-intron (ENSMUSG00000061731.9, intron 1 of 10) -129668 ENSMUSG00000061731.9 ENSMUSG00000061731 ENSMUST00000140798 Ext1 protein_coding Interval_121995 chr5 13364015 13364520 + 0 NA intron (ENSMUSG00000028883.17, intron 3 of 8) protein_coding-intron (ENSMUSG00000028883.17, intron 3 of 8) -35310 ENSMUSG00000028883.17 ENSMUSG00000028883 ENSMUST00000200073 Sema3a protein_coding Interval_90556 chr2 31127092 31128292 + 0 NA intron (ENSMUSG00000075415.13, intron 1 of 5) protein_coding-intron (ENSMUSG00000075415.13, intron 1 of 13) -11380 ENSMUSG00000075415.13 ENSMUSG00000075415 ENSMUST00000136085 Fnbp1 protein_coding Interval_35719 chr12 28621418 28621915 + 0 NA intron (ENSMUSG00000036655.8, intron 1 of 6) protein_coding-intron (ENSMUSG00000036655.8, intron 1 of 6) 1594 ENSMUSG00000036655.8 ENSMUSG00000036655 ENSMUST00000220836 Colec11 protein_coding Interval_6028 chr1 94086963 94087690 + 0 NA Intergenic Intergenic -34773 ENSMUSG00000026285.7 ENSMUSG00000026285 ENSMUST00000027507 Pdcd1 protein_coding Interval_41822 chr12 119936816 119936985 + 0 NA Intergenic Intergenic -8922 ENSMUSG00000048004.15 ENSMUSG00000048004 ENSMUST00000184069 Tmem196 protein_coding Interval_116857 chr4 117737564 117738001 + 0 NA Intergenic Intergenic -8483 ENSMUSG00000084260.1 ENSMUSG00000084260 ENSMUST00000119463 Gm12844 processed_pseudogene Interval_74298 chr17 48639015 48639961 + 0 NA Intergenic Intergenic 21665 ENSMUSG00000077708.1 ENSMUSG00000077708 ENSMUST00000104520 Gm24071 snoRNA Interval_68074 chr16 64860614 64860919 + 0 NA Intergenic Intergenic 8064 ENSMUSG00000054604.7 ENSMUSG00000054604 ENSMUST00000136532 Cggbp1 protein_coding Interval_58599 chr15 36479067 36479747 + 0 NA exon (ENSMUSG00000048307.8, exon 5 of 5) protein_coding-exon (ENSMUSG00000048307.8, exon 5 of 5) 17308 ENSMUSG00000048307.8 ENSMUSG00000048307 ENSMUST00000228941 Ankrd46 protein_coding Interval_58903 chr15 39856093 39857696 + 0 NA intron (ENSMUSG00000022304.13, intron 1 of 1) protein_coding-intron (ENSMUSG00000022304.13, intron 1 of 9) 59849 ENSMUSG00000087695.1 ENSMUSG00000087695 ENSMUST00000147378 Gm16291 antisense Interval_149739 chr7 101051389 101052273 + 0 NA Intergenic Intergenic 9644 ENSMUSG00000109171.1 ENSMUSG00000109171 ENSMUST00000207053 Gm5735 processed_pseudogene Interval_119593 chr4 138585440 138585665 + 0 NA intron (ENSMUSG00000028753.12, intron 14 of 14) protein_coding-intron (ENSMUSG00000028753.12, intron 14 of 21) 2177 ENSMUSG00000088589.1 ENSMUSG00000088589 ENSMUST00000157964 Gm22961 snRNA Interval_53138 chr14 54670497 54670934 + 0 NA intron (ENSMUSG00000022185.19, intron 3 of 4) protein_coding-intron (ENSMUSG00000022185.19, intron 4 of 18) -15522 ENSMUSG00000040822.7 ENSMUSG00000040822 ENSMUST00000227269 1700123O20Rik protein_coding Interval_64357 chr16 10784378 10786836 + 0 NA promoter-TSS (ENSMUSG00000038037.5) protein_coding-promoter-TSS (ENSMUSG00000038037.5) -71 ENSMUSG00000038037.5 ENSMUSG00000038037 ENSMUST00000038099 Socs1 protein_coding Interval_2828 chr1 45994365 45994568 + 0 NA Intergenic Intergenic 12918 ENSMUSG00000070896.2 ENSMUSG00000070896 ENSMUST00000085632 Rpl23a-ps1 processed_pseudogene Interval_130997 chr5 134473570 134474195 + 0 NA Intergenic Intergenic 10642 ENSMUSG00000072576.5 ENSMUSG00000072576 ENSMUST00000084281 Gm16020 processed_pseudogene Interval_92400 chr2 59541297 59541961 + 0 NA Intergenic Intergenic 23055 ENSMUSG00000081157.1 ENSMUSG00000081157 ENSMUST00000118837 Gm13552 processed_pseudogene Interval_118986 chr4 134869305 134869655 + 0 NA intron (ENSMUSG00000028825.7, intron 1 of 9) protein_coding-intron (ENSMUSG00000028825.7, intron 1 of 9) -10330 ENSMUSG00000028825.7 ENSMUSG00000028825 ENSMUST00000136163 Rhd protein_coding Interval_145413 chr7 34598042 34598667 + 0 NA Intergenic Intergenic 39358 ENSMUSG00000108723.1 ENSMUSG00000108723 ENSMUST00000206863 Gm44837 lincRNA Interval_16152 chr10 61068422 61069531 + 0 NA Intergenic Intergenic -17076 ENSMUSG00000093573.1 ENSMUSG00000093573 ENSMUST00000176406 Gm20610 lincRNA Interval_167572 chr9 70532185 70533120 + 0 NA Intergenic Intergenic -5162 ENSMUSG00000064921.1 ENSMUSG00000064921 ENSMUST00000082987 Gm22229 snRNA Interval_127835 chr5 108101483 108101999 + 0 NA TTS (ENSMUSG00000029267.17) protein_coding-TTS (ENSMUSG00000029267.17) 30789 ENSMUSG00000063406.11 ENSMUSG00000063406 ENSMUST00000119784 Tmed5 protein_coding Interval_31264 chr11 99199583 99200211 + 0 NA Intergenic Intergenic 13546 ENSMUSG00000037935.16 ENSMUSG00000037935 ENSMUST00000128215 Smarce1 protein_coding Interval_67570 chr16 51009030 51009937 + 0 NA Intergenic Intergenic -41647 ENSMUSG00000116706.1 ENSMUSG00000116706 ENSMUST00000231893 Gm32431 lincRNA Interval_145236 chr7 30832512 30832988 + 0 NA Intergenic Intergenic -11773 ENSMUSG00000051314.11 ENSMUSG00000051314 ENSMUST00000186059 Ffar2 protein_coding Interval_154848 chr8 24353306 24355438 + 0 NA intron (ENSMUSG00000109299.1, intron 4 of 4) lincRNA-intron (ENSMUSG00000109299.1, intron 4 of 4) 5064 ENSMUSG00000109299.1 ENSMUSG00000109299 ENSMUST00000207438 Gm45164 lincRNA Interval_50576 chr14 15881034 15881637 + 0 NA intron (ENSMUSG00000114794.1, intron 1 of 3) lincRNA-intron (ENSMUSG00000114794.1, intron 1 of 3) 4707 ENSMUSG00000114513.1 ENSMUSG00000114513 ENSMUST00000225441 Gm47780 lincRNA Interval_19182 chr10 95345528 95346059 + 0 NA intron (ENSMUSG00000100550.2, intron 1 of 2) lincRNA-intron (ENSMUSG00000100550.2, intron 1 of 2) -9095 ENSMUSG00000100550.2 ENSMUSG00000100550 ENSMUST00000219492 2310039L15Rik lincRNA Interval_121461 chr4 155968866 155970742 + 0 NA Intergenic Intergenic 5243 ENSMUSG00000023571.4 ENSMUSG00000023571 ENSMUST00000127222 C1qtnf12 protein_coding Interval_62884 chr15 97704920 97706115 + 0 NA intron (ENSMUSG00000022466.6, intron 1 of 16) protein_coding-intron (ENSMUSG00000022466.6, intron 1 of 16) 15645 ENSMUSG00000022468.12 ENSMUSG00000022468 ENSMUST00000100249 Endou protein_coding Interval_170438 chr9 107985247 107986716 + 0 NA promoter-TSS (ENSMUSG00000042106.5) protein_coding-promoter-TSS (ENSMUSG00000042106.5) -349 ENSMUSG00000042106.5 ENSMUSG00000042106 ENSMUST00000175914 Inka1 protein_coding Interval_20003 chr10 111894623 111895718 + 0 NA Intergenic Intergenic 6156 ENSMUSG00000112628.1 ENSMUSG00000112628 ENSMUST00000217819 Gm47880 processed_pseudogene Interval_73209 chr17 35584372 35584806 + 0 NA Intergenic Intergenic -16989 ENSMUSG00000090509.2 ENSMUSG00000090509 ENSMUST00000171166 Sfta2 protein_coding Interval_82138 chr18 67968519 67969250 + 0 NA intron (ENSMUSG00000024544.9, intron 1 of 5) protein_coding-intron (ENSMUSG00000024544.9, intron 1 of 5) 61256 ENSMUSG00000118326.1 ENSMUSG00000118326 ENSMUST00000235570 Gm8887 processed_pseudogene Interval_35850 chr12 31234586 31234887 + 0 NA exon (ENSMUSG00000112518.1, exon 1 of 1) processed_pseudogene-exon (ENSMUSG00000112518.1, exon 1 of 1) 164 ENSMUSG00000112518.1 ENSMUSG00000112518 ENSMUST00000218421 Gm48117 processed_pseudogene Interval_46375 chr13 64322756 64323246 + 0 NA promoter-TSS (ENSMUSG00000118556.1) processed_pseudogene-promoter-TSS (ENSMUSG00000118556.1) -83 ENSMUSG00000118556.1 ENSMUSG00000118556 ENSMUST00000238814 CT030159.1 processed_pseudogene Interval_132587 chr5 146489166 146489403 + 0 NA Intergenic Intergenic -2081 ENSMUSG00000096527.5 ENSMUSG00000096527 ENSMUST00000198912 Gm6370 protein_coding Interval_40295 chr12 103296225 103297270 + 0 NA Intergenic Intergenic -14228 ENSMUSG00000096753.7 ENSMUSG00000096753 ENSMUST00000179363 Fam181a protein_coding Interval_68606 chr16 81035947 81036540 + 0 NA Intergenic Intergenic 86594 ENSMUSG00000116566.1 ENSMUSG00000116566 ENSMUST00000232298 Fkbp1a-ps3 processed_pseudogene Interval_63489 chr15 101414852 101415260 + 0 NA exon (ENSMUSG00000023039.17, exon 2 of 8) protein_coding-exon (ENSMUSG00000023039.17, exon 2 of 8) -2745 ENSMUSG00000116116.1 ENSMUSG00000116116 ENSMUST00000231016 Gm671 antisense Interval_70401 chr17 9790193 9790437 + 0 NA Intergenic Intergenic -14449 ENSMUSG00000117264.1 ENSMUSG00000117264 ENSMUST00000233594 4930452A19Rik processed_transcript Interval_55135 chr14 78525238 78525647 + 0 NA intron (ENSMUSG00000022016.17, intron 1 of 11) protein_coding-intron (ENSMUSG00000022016.17, intron 1 of 11) -21471 ENSMUSG00000022016.17 ENSMUSG00000022016 ENSMUST00000226416 Akap11 protein_coding Interval_30743 chr11 96225602 96225860 + 0 NA Intergenic Intergenic -22902 ENSMUSG00000083337.1 ENSMUSG00000083337 ENSMUST00000119837 Gm11539 processed_pseudogene Interval_31539 chr11 101248040 101248940 + 0 NA TTS (ENSMUSG00000001240.13) protein_coding-TTS (ENSMUSG00000001240.13) 1923 ENSMUSG00000001240.13 ENSMUSG00000001240 ENSMUST00000107282 Ramp2 protein_coding Interval_27053 chr11 62578427 62579069 + 0 NA intron (ENSMUSG00000018507.16, intron 3 of 13) protein_coding-intron (ENSMUSG00000018507.16, intron 3 of 15) -2519 ENSMUSG00000018507.16 ENSMUSG00000018507 ENSMUST00000153486 Trpv2 protein_coding Interval_135563 chr6 40441704 40443668 + 0 NA promoter-TSS (ENSMUSG00000037159.11) protein_coding-promoter-TSS (ENSMUSG00000037159.11) 3598 ENSMUSG00000037159.11 ENSMUSG00000037159 ENSMUST00000141490 Wee2 protein_coding Interval_145497 chr7 35214560 35215789 + 0 NA exon (ENSMUSG00000001802.16, exon 1 of 7) protein_coding-exon (ENSMUSG00000001802.16, exon 1 of 7) -2061 ENSMUSG00000088307.1 ENSMUSG00000088307 ENSMUST00000157682 Gm24505 snoRNA Interval_122592 chr5 24071144 24072271 + 0 NA Intergenic Intergenic -13537 ENSMUSG00000106118.1 ENSMUSG00000106118 ENSMUST00000197900 Gm18038 processed_pseudogene Interval_153093 chr7 141315878 141316422 + 0 NA intron (ENSMUSG00000058886.9, intron 6 of 10) protein_coding-intron (ENSMUSG00000058886.9, intron 6 of 11) 11428 ENSMUSG00000058886.9 ENSMUSG00000058886 ENSMUST00000209608 Deaf1 protein_coding Interval_163509 chr9 21784550 21785075 + 0 NA intron (ENSMUSG00000032194.9, intron 3 of 10) protein_coding-intron (ENSMUSG00000032194.9, intron 3 of 11) 13691 ENSMUSG00000032194.9 ENSMUSG00000032194 ENSMUST00000213691 Kank2 protein_coding Interval_59573 chr15 55484633 55485489 + 0 NA intron (ENSMUSG00000022371.16, intron 10 of 17) protein_coding-intron (ENSMUSG00000022371.16, intron 40 of 47) -5684 ENSMUSG00000115414.1 ENSMUSG00000115414 ENSMUST00000227284 Gm49257 processed_transcript Interval_10893 chr1 176694169 176694398 + 0 NA Intergenic Intergenic -6334 ENSMUSG00000087875.1 ENSMUSG00000087875 ENSMUST00000157250 Gm26104 snRNA Interval_155725 chr8 36527643 36528376 + 0 NA Intergenic Intergenic 38818 ENSMUSG00000039620.17 ENSMUSG00000039620 ENSMUST00000125492 Trmt9b protein_coding Interval_146020 chr7 43253407 43255072 + 0 NA Intergenic Intergenic 40200 ENSMUSG00000074887.4 ENSMUSG00000074887 ENSMUST00000163106 EU599041 lincRNA Interval_157734 chr8 72589657 72590635 + 0 NA Intergenic Intergenic 18091 ENSMUSG00000031791.8 ENSMUSG00000031791 ENSMUST00000211914 Tmem38a protein_coding Interval_95024 chr2 103258753 103259226 + 0 NA Intergenic Intergenic -26025 ENSMUSG00000084385.1 ENSMUSG00000084385 ENSMUST00000119208 Gm13873 processed_pseudogene Interval_66143 chr16 31931118 31931718 + 0 NA Intergenic Intergenic -2229 ENSMUSG00000116534.1 ENSMUSG00000116534 ENSMUST00000231931 Gm49731 TEC Interval_110322 chr3 156842281 156842880 + 0 NA intron (ENSMUSG00000040037.13, intron 1 of 6) protein_coding-intron (ENSMUSG00000040037.13, intron 1 of 6) 26543 ENSMUSG00000083122.1 ENSMUSG00000083122 ENSMUST00000117320 Gm15578 unprocessed_pseudogene Interval_125399 chr5 66689706 66690949 + 0 NA exon (ENSMUSG00000107300.1, exon 1 of 1) TEC-exon (ENSMUSG00000107300.1, exon 1 of 1) 1445 ENSMUSG00000107300.1 ENSMUSG00000107300 ENSMUST00000202376 Gm43279 TEC Interval_103651 chr3 51402229 51402773 + 0 NA TTS (ENSMUSG00000104241.1) processed_pseudogene-TTS (ENSMUSG00000104241.1) 661 ENSMUSG00000104241.1 ENSMUSG00000104241 ENSMUST00000194242 Gm9442 processed_pseudogene Interval_93458 chr2 73190436 73191002 + 0 NA intron (ENSMUSG00000027108.15, intron 3 of 9) protein_coding-intron (ENSMUSG00000027108.15, intron 4 of 10) 14108 ENSMUSG00000083976.1 ENSMUSG00000083976 ENSMUST00000117304 Gm13664 processed_pseudogene Interval_35942 chr12 32245435 32246034 + 0 NA promoter-TSS (ENSMUSG00000112578.1) lincRNA-promoter-TSS (ENSMUSG00000112578.1) -596 ENSMUSG00000112578.1 ENSMUSG00000112578 ENSMUST00000218566 Gm33308 lincRNA Interval_160353 chr8 108699485 108699790 + 0 NA intron (ENSMUSG00000038872.10, intron 6 of 15) protein_coding-intron (ENSMUSG00000038872.10, intron 6 of 15) -37956 ENSMUSG00000104292.1 ENSMUSG00000104292 ENSMUST00000191614 Gm38042 TEC Interval_125429 chr5 67047744 67048274 + 0 NA intron (ENSMUSG00000037736.20, intron 21 of 21) protein_coding-intron (ENSMUSG00000037736.20, intron 20 of 20) 5783 ENSMUSG00000080601.1 ENSMUSG00000080601 ENSMUST00000116951 Gm23841 miRNA Interval_158366 chr8 83036121 83037541 + 0 NA intron (ENSMUSG00000047747.10, intron 5 of 6) protein_coding-intron (ENSMUSG00000047747.10, intron 5 of 6) 50126 ENSMUSG00000109876.1 ENSMUSG00000109876 ENSMUST00000211485 Gm45449 antisense Interval_167021 chr9 64611528 64612363 + 0 NA intron (ENSMUSG00000036466.17, intron 1 of 1) protein_coding-intron (ENSMUSG00000036466.17, intron 5 of 24) 113775 ENSMUSG00000004771.12 ENSMUSG00000004771 ENSMUST00000165083 Rab11a protein_coding Interval_112860 chr4 45583895 45584219 + 0 NA Intergenic Intergenic 34040 ENSMUSG00000081559.3 ENSMUSG00000081559 ENSMUST00000119140 Gm12411 processed_pseudogene Interval_92401 chr2 59543112 59543359 + 0 NA Intergenic Intergenic 21449 ENSMUSG00000081157.1 ENSMUSG00000081157 ENSMUST00000118837 Gm13552 processed_pseudogene Interval_151661 chr7 125774320 125774545 + 0 NA intron (ENSMUSG00000032743.15, intron 5 of 26) protein_coding-intron (ENSMUSG00000032743.15, intron 6 of 27) 66515 ENSMUSG00000032743.15 ENSMUSG00000032743 ENSMUST00000155059 D430042O09Rik protein_coding Interval_152635 chr7 135604938 135605892 + 0 NA promoter-TSS (ENSMUSG00000041836.10) protein_coding-promoter-TSS (ENSMUSG00000041836.10) 12027 ENSMUSG00000041836.10 ENSMUSG00000041836 ENSMUST00000211092 Ptpre protein_coding Interval_152061 chr7 128694691 128695159 + 0 NA exon (ENSMUSG00000042105.18, exon 20 of 20) protein_coding-exon (ENSMUSG00000042105.18, exon 20 of 20) 2236 ENSMUSG00000081339.1 ENSMUSG00000081339 ENSMUST00000118475 Gm16044 processed_pseudogene Interval_168421 chr9 80180080 80180295 + 0 NA intron (ENSMUSG00000033577.18, intron 1 of 35) protein_coding-intron (ENSMUSG00000033577.18, intron 1 of 32) 14960 ENSMUSG00000033577.18 ENSMUSG00000033577 ENSMUST00000138650 Myo6 protein_coding Interval_4716 chr1 77532324 77532564 + 0 NA Intergenic Intergenic 17164 ENSMUSG00000101849.1 ENSMUSG00000101849 ENSMUST00000189147 Gm28386 lincRNA Interval_14971 chr10 41565086 41566493 + 0 NA intron (ENSMUSG00000075225.15, intron 10 of 20) protein_coding-intron (ENSMUSG00000075225.15, intron 7 of 12) -2227 ENSMUSG00000091370.1 ENSMUSG00000091370 ENSMUST00000165647 5730435O14Rik processed_transcript Interval_78666 chr18 16627819 16628138 + 0 NA intron (ENSMUSG00000024304.14, intron 9 of 14) protein_coding-intron (ENSMUSG00000024304.14, intron 10 of 15) -100755 ENSMUSG00000085575.1 ENSMUSG00000085575 ENSMUST00000149095 Gm15485 antisense Interval_18321 chr10 84897860 84899236 + 0 NA intron (ENSMUSG00000020037.15, intron 14 of 14) protein_coding-intron (ENSMUSG00000020037.15, intron 17 of 17) -38845 ENSMUSG00000035620.15 ENSMUSG00000035620 ENSMUST00000214820 Ric8b protein_coding Interval_41043 chr12 110775574 110776588 + 0 NA intron (ENSMUSG00000037957.14, intron 1 of 4) protein_coding-intron (ENSMUSG00000037957.14, intron 1 of 2) 37872 ENSMUSG00000037957.14 ENSMUSG00000037957 ENSMUST00000194118 Wdr20 protein_coding Interval_23291 chr11 21204636 21205395 + 0 NA Intergenic Intergenic 1931 ENSMUSG00000084259.1 ENSMUSG00000084259 ENSMUST00000118357 Gm12040 processed_pseudogene Interval_8888 chr1 151836455 151836772 + 0 NA Intergenic Intergenic 18342 ENSMUSG00000084557.1 ENSMUSG00000084557 ENSMUST00000122608 Gm25279 snRNA Interval_74138 chr17 46728103 46729942 + 0 NA exon (ENSMUSG00000002769.9, exon 1 of 6) protein_coding-exon (ENSMUSG00000002769.9, exon 1 of 6) -2320 ENSMUSG00000002769.9 ENSMUSG00000002769 ENSMUST00000233086 Gnmt protein_coding Interval_47977 chr13 94813914 94814518 + 0 NA intron (ENSMUSG00000042043.6, intron 1 of 3) protein_coding-intron (ENSMUSG00000042043.6, intron 1 of 3) -3518 ENSMUSG00000042043.6 ENSMUSG00000042043 ENSMUST00000220561 Tbca protein_coding Interval_87957 chr19 57374847 57376047 + 0 NA intron (ENSMUSG00000033478.5, intron 5 of 14) protein_coding-intron (ENSMUSG00000033478.5, intron 5 of 16) 14417 ENSMUSG00000033478.5 ENSMUSG00000033478 ENSMUST00000237170 Fam160b1 protein_coding Interval_174148 chrX 136305984 136306878 + 0 NA Intergenic Intergenic -21868 ENSMUSG00000083470.1 ENSMUSG00000083470 ENSMUST00000120785 Nsa2-ps2 processed_pseudogene Interval_115428 chr4 98873267 98874179 + 0 NA Intergenic Intergenic 18109 ENSMUSG00000084188.1 ENSMUSG00000084188 ENSMUST00000117920 Gm12851 processed_pseudogene Interval_29530 chr11 84712194 84713353 + 0 NA Intergenic Intergenic 7659 ENSMUSG00000085044.1 ENSMUSG00000085044 ENSMUST00000150735 1700109G15Rik lincRNA Interval_128442 chr5 113334697 113336166 + 0 NA Intergenic Intergenic 2214 ENSMUSG00000104840.1 ENSMUSG00000104840 ENSMUST00000195977 Mir7230 miRNA Interval_5000 chr1 84072070 84072506 + 0 NA intron (ENSMUSG00000045658.16, intron 2 of 2) protein_coding-intron (ENSMUSG00000045658.16, intron 2 of 2) 62222 ENSMUSG00000102750.1 ENSMUSG00000102750 ENSMUST00000193393 Gm37058 TEC Interval_24575 chr11 34747036 34747330 + 0 NA intron (ENSMUSG00000020143.15, intron 2 of 26) protein_coding-intron (ENSMUSG00000020143.15, intron 2 of 51) 76768 ENSMUSG00000069910.2 ENSMUSG00000069910 ENSMUST00000148387 Spdl1 protein_coding Interval_94891 chr2 100923364 100923801 + 0 NA Intergenic Intergenic -295539 ENSMUSG00000095203.1 ENSMUSG00000095203 ENSMUST00000118584 Gm13810 processed_pseudogene Interval_71308 chr17 22060579 22061161 + 0 NA intron (ENSMUSG00000053347.15, intron 5 of 5) protein_coding-intron (ENSMUSG00000053347.15, intron 5 of 5) 9018 ENSMUSG00000117234.1 ENSMUSG00000117234 ENSMUST00000232840 Gm7818 processed_pseudogene Interval_170702 chr9 110179139 110179544 + 0 NA intron (ENSMUSG00000032481.17, intron 13 of 24) protein_coding-intron (ENSMUSG00000032481.17, intron 13 of 27) -57053 ENSMUSG00000032481.17 ENSMUSG00000032481 ENSMUST00000200426 Smarcc1 protein_coding Interval_42792 chr13 19590916 19592019 + 0 NA TTS (ENSMUSG00000002808.7) protein_coding-TTS (ENSMUSG00000002808.7) 28321 ENSMUSG00000002808.7 ENSMUSG00000002808 ENSMUST00000220755 Epdr1 protein_coding Interval_36221 chr12 39874650 39875187 + 0 NA promoter-TSS (ENSMUSG00000113761.1) transcribed_processed_pseudogene-promoter-TSS (ENSMUSG00000113761.1) -532 ENSMUSG00000113761.1 ENSMUSG00000113761 ENSMUST00000221392 Gm4263 transcribed_processed_pseudogene Interval_119538 chr4 138246747 138247462 + 0 NA Intergenic Intergenic -9631 ENSMUSG00000045349.15 ENSMUSG00000045349 ENSMUST00000154421 Sh2d5 protein_coding Interval_129273 chr5 118591579 118592451 + 0 NA intron (ENSMUSG00000018076.12, intron 1 of 1) protein_coding-intron (ENSMUSG00000018076.12, intron 1 of 30) -10701 ENSMUSG00000107286.1 ENSMUSG00000107286 ENSMUST00000201539 Gm43788 TEC Interval_82991 chr18 80211871 80212433 + 0 NA exon (ENSMUSG00000024571.15, exon 4 of 4) protein_coding-exon (ENSMUSG00000024571.15, exon 4 of 4) 5357 ENSMUSG00000057130.12 ENSMUSG00000057130 ENSMUST00000130675 Txnl4a protein_coding Interval_132476 chr5 145182591 145183407 + 0 NA TTS (ENSMUSG00000038690.15) protein_coding-TTS (ENSMUSG00000038690.15) 8529 ENSMUSG00000038690.15 ENSMUSG00000038690 ENSMUST00000200584 Atp5j2 protein_coding Interval_66120 chr16 31753175 31753616 + 0 NA promoter-TSS (ENSMUSG00000022770.17) protein_coding-promoter-TSS (ENSMUSG00000022770.17) -6053 ENSMUSG00000089011.1 ENSMUSG00000089011 ENSMUST00000158386 Gm24879 snoRNA Interval_41684 chr12 117727310 117727742 + 0 NA intron (ENSMUSG00000041992.9, intron 8 of 15) protein_coding-intron (ENSMUSG00000041992.9, intron 20 of 27) 3554 ENSMUSG00000113840.1 ENSMUSG00000113840 ENSMUST00000223173 Gm18955 processed_pseudogene Interval_92205 chr2 56278806 56279579 + 0 NA Intergenic Intergenic 239339 ENSMUSG00000082142.1 ENSMUSG00000082142 ENSMUST00000120018 Gm13518 processed_pseudogene Interval_80474 chr18 42544887 42546338 + 0 NA intron (ENSMUSG00000024498.16, intron 9 of 21) protein_coding-intron (ENSMUSG00000024498.16, intron 8 of 20) -7770 ENSMUSG00000024498.16 ENSMUSG00000024498 ENSMUST00000237162 Tcerg1 protein_coding Interval_69139 chr16 90893440 90894008 + 0 NA intron (ENSMUSG00000039903.18, intron 7 of 9) protein_coding-intron (ENSMUSG00000039903.18, intron 5 of 7) -21456 ENSMUSG00000083226.2 ENSMUSG00000083226 ENSMUST00000117990 Gm7831 processed_pseudogene Interval_159156 chr8 91154050 91154916 + 0 NA intron (ENSMUSG00000031667.16, intron 1 of 7) protein_coding-intron (ENSMUSG00000031667.16, intron 2 of 3) 2276 ENSMUSG00000110189.1 ENSMUSG00000110189 ENSMUST00000210399 Gm45665 processed_pseudogene Interval_54394 chr14 68278104 68278653 + 0 NA Intergenic Intergenic 60125 ENSMUSG00000114925.1 ENSMUSG00000114925 ENSMUST00000223651 Gm47212 lincRNA Interval_86322 chr19 38750532 38750793 + 0 NA exon (ENSMUSG00000024998.17, exon 5 of 5) protein_coding-exon (ENSMUSG00000024998.17, exon 5 of 5) 1983 ENSMUSG00000101079.1 ENSMUSG00000101079 ENSMUST00000186584 Gm28991 antisense Interval_170646 chr9 109875218 109876529 + 0 NA promoter-TSS (ENSMUSG00000032477.14) protein_coding-promoter-TSS (ENSMUSG00000032477.14) -7731 ENSMUSG00000032477.14 ENSMUSG00000032477 ENSMUST00000198219 Cdc25a protein_coding Interval_46044 chr13 60555003 60555519 + 0 NA Intergenic Intergenic -25852 ENSMUSG00000080666.1 ENSMUSG00000080666 ENSMUST00000117016 Gm25000 miRNA Interval_69012 chr16 90122746 90124266 + 0 NA intron (ENSMUSG00000002489.16, intron 1 of 11) protein_coding-intron (ENSMUSG00000002489.16, intron 1 of 11) 33523 ENSMUSG00000116536.1 ENSMUSG00000116536 ENSMUST00000232386 Gm2805 processed_pseudogene Interval_42651 chr13 17716977 17717269 + 0 NA TTS (ENSMUSG00000041297.8) protein_coding-TTS (ENSMUSG00000041297.8) -7259 ENSMUSG00000113045.1 ENSMUSG00000113045 ENSMUST00000220764 Gm48621 TEC Interval_30465 chr11 94548516 94549757 + 0 NA promoter-TSS (ENSMUSG00000039096.10) protein_coding-promoter-TSS (ENSMUSG00000039096.10) -534 ENSMUSG00000039096.10 ENSMUSG00000039096 ENSMUST00000148888 Rsad1 protein_coding Interval_142205 chr6 138443822 138444110 + 0 NA promoter-TSS (ENSMUSG00000107675.1) antisense-promoter-TSS (ENSMUSG00000107675.1) -7 ENSMUSG00000107675.1 ENSMUSG00000107675 ENSMUST00000204221 Gm30332 antisense Interval_28599 chr11 77064222 77065612 + 0 NA intron (ENSMUSG00000037958.13, intron 2 of 2) protein_coding-intron (ENSMUSG00000037958.13, intron 2 of 6) 11970 ENSMUSG00000077639.1 ENSMUSG00000077639 ENSMUST00000104451 Gm22772 snoRNA Interval_67823 chr16 57473040 57474408 + 0 NA intron (ENSMUSG00000022748.8, intron 1 of 1) protein_coding-intron (ENSMUSG00000022748.8, intron 1 of 1) 120631 ENSMUSG00000043336.14 ENSMUSG00000043336 ENSMUST00000159414 Filip1l protein_coding Interval_141924 chr6 135400207 135400562 + 0 NA Intergenic Intergenic 37839 ENSMUSG00000030208.15 ENSMUSG00000030208 ENSMUST00000111907 Emp1 protein_coding Interval_59308 chr15 51084236 51084434 + 0 NA Intergenic Intergenic 186696 ENSMUSG00000115339.1 ENSMUSG00000115339 ENSMUST00000226611 Gm48913 lincRNA Interval_16408 chr10 62773378 62773602 + 0 NA intron (ENSMUSG00000020074.7, intron 8 of 24) protein_coding-intron (ENSMUSG00000020074.7, intron 8 of 24) -7850 ENSMUSG00000080469.1 ENSMUSG00000080469 ENSMUST00000116819 Snord98 snoRNA Interval_57110 chr15 6588541 6588781 + 0 NA intron (ENSMUSG00000022148.16, intron 1 of 5) protein_coding-intron (ENSMUSG00000022148.16, intron 1 of 17) 18221 ENSMUSG00000089647.2 ENSMUSG00000089647 ENSMUST00000228703 Gm2245 antisense Interval_8369 chr1 138283374 138284154 + 0 NA exon (ENSMUSG00000026394.5, exon 2 of 3) protein_coding-exon (ENSMUSG00000026394.5, exon 2 of 3) 10026 ENSMUSG00000026394.5 ENSMUSG00000026394 ENSMUST00000027643 Atp6v1g3 protein_coding Interval_122321 chr5 21271534 21271903 + 0 NA intron (ENSMUSG00000039934.12, intron 21 of 26) protein_coding-intron (ENSMUSG00000039934.12, intron 22 of 30) 7903 ENSMUSG00000105275.1 ENSMUSG00000105275 ENSMUST00000199242 Gm43214 processed_pseudogene Interval_54132 chr14 65584893 65585634 + 0 NA intron (ENSMUSG00000022031.6, intron 3 of 14) protein_coding-intron (ENSMUSG00000022031.6, intron 3 of 14) 7789 ENSMUSG00000022031.6 ENSMUSG00000022031 ENSMUST00000224743 Elp3 protein_coding Interval_172953 chrX 57521196 57522253 + 0 NA Intergenic Intergenic -17967 ENSMUSG00000036357.5 ENSMUSG00000036357 ENSMUST00000057645 Gpr101 protein_coding Interval_97729 chr2 143545283 143548166 + 0 NA promoter-TSS (ENSMUSG00000086171.7) antisense-promoter-TSS (ENSMUSG00000086171.7) 453 ENSMUSG00000027419.9 ENSMUSG00000027419 ENSMUST00000124751 Pcsk2 protein_coding Interval_127755 chr5 107402487 107404256 + 0 NA promoter-TSS (ENSMUSG00000033805.12) protein_coding-promoter-TSS (ENSMUSG00000033805.12) 109 ENSMUSG00000106396.1 ENSMUSG00000106396 ENSMUST00000199508 Gm42902 antisense Interval_3914 chr1 64737046 64739030 + 0 NA promoter-TSS (ENSMUSG00000045005.9) protein_coding-promoter-TSS (ENSMUSG00000045005.9) -289 ENSMUSG00000045005.9 ENSMUSG00000045005 ENSMUST00000116133 Fzd5 protein_coding Interval_132785 chr5 147860108 147861415 + 0 NA intron (ENSMUSG00000029649.10, intron 1 of 1) protein_coding-intron (ENSMUSG00000029649.10, intron 1 of 5) 7787 ENSMUSG00000107079.1 ENSMUSG00000107079 ENSMUST00000202304 Gm35648 processed_pseudogene Interval_349 chr1 4422336 4422740 + 0 NA Intergenic Intergenic -13297 ENSMUSG00000025900.13 ENSMUSG00000025900 ENSMUST00000027032 Rp1 protein_coding Interval_8860 chr1 151610276 151611502 + 0 NA intron (ENSMUSG00000026483.13, intron 1 of 13) protein_coding-intron (ENSMUSG00000026483.13, intron 1 of 14) 39516 ENSMUSG00000026483.13 ENSMUSG00000026483 ENSMUST00000086267 Fam129a protein_coding Interval_67875 chr16 58476164 58476752 + 0 NA intron (ENSMUSG00000022747.17, intron 3 of 3) protein_coding-intron (ENSMUSG00000022747.17, intron 7 of 11) 16259 ENSMUSG00000035107.13 ENSMUSG00000035107 ENSMUST00000135415 Dcbld2 protein_coding Interval_57998 chr15 25925830 25926433 + 0 NA intron (ENSMUSG00000022270.16, intron 1 of 2) protein_coding-intron (ENSMUSG00000022270.16, intron 3 of 8) 15707 ENSMUSG00000022270.16 ENSMUSG00000022270 ENSMUST00000228306 Retreg1 protein_coding Interval_44170 chr13 41476225 41476930 + 0 NA TTS (ENSMUSG00000114537.1) TEC-TTS (ENSMUSG00000114537.1) 1323 ENSMUSG00000114537.1 ENSMUSG00000114537 ENSMUST00000223906 Gm48569 TEC Interval_146689 chr7 49456213 49456811 + 0 NA intron (ENSMUSG00000052512.17, intron 7 of 38) protein_coding-intron (ENSMUSG00000052512.17, intron 7 of 37) -13200 ENSMUSG00000102148.1 ENSMUSG00000102148 ENSMUST00000193746 Gm38059 TEC Interval_152377 chr7 132575711 132576859 + 0 NA promoter-TSS (ENSMUSG00000030934.9) protein_coding-promoter-TSS (ENSMUSG00000030934.9) -567 ENSMUSG00000030934.9 ENSMUSG00000030934 ENSMUST00000211545 Oat protein_coding Interval_61140 chr15 79469463 79469764 + 0 NA Intergenic Intergenic -2768 ENSMUSG00000106626.1 ENSMUSG00000106626 ENSMUST00000104762 Gm44302 miRNA Interval_127089 chr5 100209452 100209665 + 0 NA Intergenic Intergenic -1150 ENSMUSG00000100157.6 ENSMUSG00000100157 ENSMUST00000188902 2310034O05Rik lincRNA Interval_119107 chr4 135597568 135598557 + 0 NA Intergenic Intergenic 14314 ENSMUSG00000088179.1 ENSMUSG00000088179 ENSMUST00000157554 Gm23106 snRNA Interval_127655 chr5 106322627 106323131 + 0 NA exon (ENSMUSG00000105508.1, exon 3 of 3) lincRNA-exon (ENSMUSG00000105508.1, exon 3 of 3) 1539 ENSMUSG00000105508.1 ENSMUSG00000105508 ENSMUST00000200592 Gm32921 lincRNA Interval_63376 chr15 100682983 100683341 + 0 NA promoter-TSS (ENSMUSG00000023031.8) protein_coding-promoter-TSS (ENSMUSG00000023031.8) -4096 ENSMUSG00000023031.8 ENSMUSG00000023031 ENSMUST00000230642 Cela1 protein_coding Interval_141538 chr6 128996204 128997449 + 0 NA intron (ENSMUSG00000087150.7, intron 1 of 2) transcribed_unprocessed_pseudogene-intron (ENSMUSG00000087150.7, intron 1 of 6) 3874 ENSMUSG00000087150.7 ENSMUSG00000087150 ENSMUST00000122939 BC064078 transcribed_unprocessed_pseudogene Interval_36172 chr12 37653501 37654710 + 0 NA Intergenic Intergenic 84826 ENSMUSG00000114007.1 ENSMUSG00000114007 ENSMUST00000221458 Gm48660 processed_pseudogene Interval_172784 chrX 48893866 48894295 + 0 NA Intergenic Intergenic -3905 ENSMUSG00000081526.1 ENSMUSG00000081526 ENSMUST00000119619 Gm7219 processed_pseudogene Interval_96466 chr2 124100882 124101343 + 0 NA intron (ENSMUSG00000027200.17, intron 1 of 1) protein_coding-intron (ENSMUSG00000027200.17, intron 1 of 20) 28844 ENSMUSG00000085496.1 ENSMUSG00000085496 ENSMUST00000129584 4930517E11Rik lincRNA Interval_118817 chr4 133864637 133866258 + 0 NA intron (ENSMUSG00000003644.17, intron 8 of 20) protein_coding-intron (ENSMUSG00000003644.17, intron 9 of 21) -7035 ENSMUSG00000085009.1 ENSMUSG00000085009 ENSMUST00000134799 Gm12977 antisense Interval_44229 chr13 42527036 42527489 + 0 NA Intergenic Intergenic -42201 ENSMUSG00000113367.1 ENSMUSG00000113367 ENSMUST00000222839 Gm47125 processed_pseudogene Interval_76485 chr17 80535953 80537386 + 0 NA intron (ENSMUSG00000033966.8, intron 7 of 9) protein_coding-intron (ENSMUSG00000033966.8, intron 7 of 9) -16795 ENSMUSG00000117375.1 ENSMUSG00000117375 ENSMUST00000234757 Gm33373 antisense Interval_134801 chr6 31642310 31643020 + 0 NA intron (ENSMUSG00000086804.8, intron 2 of 2) lincRNA-intron (ENSMUSG00000086804.8, intron 1 of 2) 23377 ENSMUSG00000084973.2 ENSMUSG00000084973 ENSMUST00000130777 Gm13848 lincRNA Interval_17876 chr10 80538828 80540141 + 0 NA promoter-TSS (ENSMUSG00000003341.9) protein_coding-promoter-TSS (ENSMUSG00000003341.9) -360 ENSMUSG00000003341.9 ENSMUSG00000003341 ENSMUST00000219648 Atp8b3 protein_coding Interval_122395 chr5 21931065 21931916 + 0 NA exon (ENSMUSG00000042453.14, exon 48 of 64) protein_coding-exon (ENSMUSG00000042453.14, exon 48 of 64) 20559 ENSMUSG00000073152.4 ENSMUSG00000073152 ENSMUST00000084713 Gm10475 antisense Interval_33127 chr11 114627586 114628704 + 0 NA Intergenic Intergenic -36463 ENSMUSG00000083769.1 ENSMUSG00000083769 ENSMUST00000120766 Gm11689 processed_pseudogene Interval_8271 chr1 136871979 136872648 + 0 NA intron (ENSMUSG00000026398.14, intron 8 of 8) protein_coding-intron (ENSMUSG00000026398.14, intron 8 of 8) -73354 ENSMUSG00000104261.1 ENSMUSG00000104261 ENSMUST00000195232 Gm17781 processed_pseudogene Interval_172739 chrX 48137871 48140097 + 0 NA Intergenic Intergenic -7452 ENSMUSG00000031101.6 ENSMUSG00000031101 ENSMUST00000033427 Sash3 protein_coding Interval_43822 chr13 37344986 37346010 + 0 NA exon (ENSMUSG00000021423.6, exon 1 of 5) protein_coding-exon (ENSMUSG00000021423.6, exon 1 of 5) 109 ENSMUSG00000021423.6 ENSMUSG00000021423 ENSMUST00000225716 Ly86 protein_coding Interval_104997 chr3 79600959 79601236 + 0 NA intron (ENSMUSG00000027804.13, intron 6 of 8) protein_coding-intron (ENSMUSG00000027804.13, intron 7 of 9) 9609 ENSMUSG00000027804.13 ENSMUSG00000027804 ENSMUST00000160799 Ppid protein_coding Interval_59466 chr15 53337293 53337721 + 0 NA intron (ENSMUSG00000061731.9, intron 1 of 10) protein_coding-intron (ENSMUSG00000061731.9, intron 1 of 10) -46412 ENSMUSG00000087805.2 ENSMUSG00000087805 ENSMUST00000157180 Gm27926 snRNA Interval_601 chr1 8598106 8598850 + 0 NA intron (ENSMUSG00000025909.16, intron 12 of 20) protein_coding-intron (ENSMUSG00000025909.16, intron 8 of 16) -9754 ENSMUSG00000093970.1 ENSMUSG00000093970 ENSMUST00000103887 Gm23358 miRNA Interval_7278 chr1 128394652 128395043 + 0 NA intron (ENSMUSG00000026356.15, intron 4 of 15) protein_coding-intron (ENSMUSG00000026356.15, intron 4 of 15) -15360 ENSMUSG00000026356.15 ENSMUSG00000026356 ENSMUST00000064309 Dars protein_coding Interval_59527 chr15 55038862 55039849 + 0 NA TTS (ENSMUSG00000037343.8) protein_coding-TTS (ENSMUSG00000037343.8) -16573 ENSMUSG00000037343.8 ENSMUSG00000037343 ENSMUST00000227254 Taf2 protein_coding Interval_105517 chr3 87188702 87189657 + 0 NA Intergenic Intergenic -14479 ENSMUSG00000041734.15 ENSMUSG00000041734 ENSMUST00000041732 Kirrel protein_coding Interval_88220 chr19 60771079 60771285 + 0 NA intron (ENSMUSG00000024991.8, intron 2 of 2) protein_coding-intron (ENSMUSG00000024991.8, intron 14 of 21) 3215 ENSMUSG00000105118.1 ENSMUSG00000105118 ENSMUST00000199618 Mir3084-2 miRNA Interval_143962 chr7 18595179 18595810 + 0 NA Intergenic Intergenic -15338 ENSMUSG00000109159.1 ENSMUSG00000109159 ENSMUST00000208568 Gm44657 unprocessed_pseudogene Interval_69923 chr17 3214629 3215576 + 0 NA intron (ENSMUSG00000116858.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000116858.1, intron 1 of 2) -16169 ENSMUSG00000116858.1 ENSMUSG00000116858 ENSMUST00000232042 Gm49797 lincRNA Interval_43837 chr13 37492086 37492876 + 0 NA Intergenic Intergenic 10096 ENSMUSG00000114573.1 ENSMUSG00000114573 ENSMUST00000223569 Gm47732 lincRNA Interval_54125 chr14 65527858 65528097 + 0 NA Intergenic Intergenic 65075 ENSMUSG00000022031.6 ENSMUSG00000022031 ENSMUST00000224743 Elp3 protein_coding Interval_14085 chr10 26711028 26711297 + 0 NA intron (ENSMUSG00000111950.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000111950.1, intron 1 of 1) 15588 ENSMUSG00000111950.1 ENSMUSG00000111950 ENSMUST00000218733 Gm48893 lincRNA Interval_61995 chr15 85729143 85729337 + 0 NA Intergenic Intergenic -6399 ENSMUSG00000022383.13 ENSMUSG00000022383 ENSMUST00000136453 Ppara protein_coding Interval_150743 chr7 114060395 114061904 + 0 NA intron (ENSMUSG00000055723.6, intron 1 of 5) protein_coding-intron (ENSMUSG00000055723.6, intron 1 of 5) -25749 ENSMUSG00000110248.1 ENSMUSG00000110248 ENSMUST00000210417 Gm45615 antisense Interval_91943 chr2 51858005 51858193 + 0 NA Intergenic Intergenic 13519 ENSMUSG00000087701.4 ENSMUSG00000087701 ENSMUST00000120318 Gm13493 processed_pseudogene Interval_45448 chr13 55221101 55221309 + 0 NA intron (ENSMUSG00000021488.8, intron 2 of 20) protein_coding-intron (ENSMUSG00000021488.8, intron 2 of 22) 9135 ENSMUSG00000021488.8 ENSMUSG00000021488 ENSMUST00000225405 Nsd1 protein_coding Interval_60809 chr15 76897485 76897989 + 0 NA intron (ENSMUSG00000116024.1, intron 4 of 4) protein_coding-intron (ENSMUSG00000116024.1, intron 4 of 4) -2228 ENSMUSG00000055041.8 ENSMUSG00000055041 ENSMUST00000230815 Commd5 protein_coding Interval_76798 chr17 84140236 84141810 + 0 NA intron (ENSMUSG00000117485.1, intron 3 of 3) lincRNA-intron (ENSMUSG00000117485.1, intron 3 of 3) -1182 ENSMUSG00000117485.1 ENSMUSG00000117485 ENSMUST00000234394 Gm19696 lincRNA Interval_109412 chr3 142036331 142036521 + 0 NA intron (ENSMUSG00000052430.15, intron 1 of 11) protein_coding-intron (ENSMUSG00000052430.15, intron 2 of 11) -104918 ENSMUSG00000052430.15 ENSMUSG00000052430 ENSMUST00000106230 Bmpr1b protein_coding Interval_136268 chr6 52435038 52436234 + 0 NA Intergenic Intergenic -56815 ENSMUSG00000107895.1 ENSMUSG00000107895 ENSMUST00000203771 1700094M24Rik lincRNA Interval_32955 chr11 113352400 113353028 + 0 NA intron (ENSMUSG00000041654.15, intron 6 of 9) protein_coding-intron (ENSMUSG00000041654.15, intron 7 of 10) -115263 ENSMUSG00000078251.2 ENSMUSG00000078251 ENSMUST00000105048 Gm16487 pseudogene Interval_170848 chr9 111160163 111160448 + 0 NA promoter-TSS (ENSMUSG00000032497.19) protein_coding-promoter-TSS (ENSMUSG00000032497.19) -13911 ENSMUSG00000032497.19 ENSMUSG00000032497 ENSMUST00000196906 Lrrfip2 protein_coding Interval_95446 chr2 109427465 109427761 + 0 NA Intergenic Intergenic 31120 ENSMUSG00000084167.1 ENSMUSG00000084167 ENSMUST00000119899 Gm13924 processed_pseudogene Interval_136254 chr6 52290919 52292112 + 0 NA Intergenic Intergenic -5609 ENSMUSG00000107463.1 ENSMUSG00000107463 ENSMUST00000205090 Gm44294 TEC Interval_1825 chr1 34032090 34032769 + 0 NA exon (ENSMUSG00000103364.1, exon 1 of 1) TEC-exon (ENSMUSG00000103364.1, exon 1 of 1) 329 ENSMUSG00000103364.1 ENSMUSG00000103364 ENSMUST00000194178 Gm38157 TEC Interval_111693 chr4 26004987 26005196 + 0 NA Intergenic Intergenic 64726 ENSMUSG00000088547.1 ENSMUSG00000088547 ENSMUST00000157922 Gm24965 snRNA Interval_127817 chr5 108019446 108019859 + 0 NA Intergenic Intergenic 17392 ENSMUSG00000084855.2 ENSMUSG00000084855 ENSMUST00000117916 Gm9850 processed_pseudogene Interval_87486 chr19 52992602 52994196 + 0 NA intron (ENSMUSG00000025027.18, intron 10 of 10) protein_coding-intron (ENSMUSG00000025027.18, intron 19 of 21) 11505 ENSMUSG00000025027.18 ENSMUSG00000025027 ENSMUST00000182939 Xpnpep1 protein_coding Interval_26918 chr11 61553504 61554630 + 0 NA intron (ENSMUSG00000001036.17, intron 2 of 4) protein_coding-intron (ENSMUSG00000001036.17, intron 1 of 9) 25620 ENSMUSG00000001036.17 ENSMUSG00000001036 ENSMUST00000137525 Epn2 protein_coding Interval_158077 chr8 78577852 78578656 + 0 NA promoter-TSS (ENSMUSG00000031684.11) protein_coding-promoter-TSS (ENSMUSG00000031684.11) -26040 ENSMUSG00000110244.1 ENSMUSG00000110244 ENSMUST00000211775 Gm2253 processed_pseudogene Interval_112603 chr4 43511577 43512078 + 0 NA promoter-TSS (ENSMUSG00000028463.14) protein_coding-promoter-TSS (ENSMUSG00000028463.14) -305 ENSMUSG00000028463.14 ENSMUSG00000028463 ENSMUST00000154251 Car9 protein_coding Interval_124965 chr5 62461738 62462016 + 0 NA Intergenic Intergenic 33158 ENSMUSG00000105285.1 ENSMUSG00000105285 ENSMUST00000196463 Gm43238 TEC Interval_165241 chr9 45715394 45715608 + 0 NA intron (ENSMUSG00000032087.11, intron 16 of 32) protein_coding-intron (ENSMUSG00000032087.11, intron 16 of 32) 78765 ENSMUSG00000043987.18 ENSMUSG00000043987 ENSMUST00000214868 Cep164 protein_coding Interval_31076 chr11 98011389 98013213 + 0 NA exon (ENSMUSG00000020882.17, exon 5 of 14) protein_coding-exon (ENSMUSG00000020882.17, exon 5 of 14) -10654 ENSMUSG00000086716.1 ENSMUSG00000086716 ENSMUST00000123784 Gm11629 processed_transcript Interval_18605 chr10 88389020 88390220 + 0 NA intron (ENSMUSG00000035311.16, intron 1 of 19) protein_coding-intron (ENSMUSG00000035311.16, intron 1 of 20) -32624 ENSMUSG00000020057.2 ENSMUSG00000020057 ENSMUST00000138159 Dram1 protein_coding Interval_57291 chr15 8469087 8470008 + 0 NA Intergenic Intergenic 12398 ENSMUSG00000115640.1 ENSMUSG00000115640 ENSMUST00000228313 Gm49247 lincRNA Interval_25303 chr11 46215257 46215760 + 0 NA intron (ENSMUSG00000020340.16, intron 26 of 30) protein_coding-intron (ENSMUSG00000020340.16, intron 26 of 30) -20023 ENSMUSG00000048721.2 ENSMUSG00000048721 ENSMUST00000060185 Fndc9 protein_coding Interval_157570 chr8 71480984 71481318 + 0 NA exon (ENSMUSG00000034863.9, exon 13 of 17) protein_coding-exon (ENSMUSG00000034863.9, exon 13 of 17) 4812 ENSMUSG00000034863.9 ENSMUSG00000034863 ENSMUST00000213016 Ano8 protein_coding Interval_103792 chr3 53005055 53005250 + 0 NA intron (ENSMUSG00000027742.13, intron 8 of 18) protein_coding-intron (ENSMUSG00000027742.13, intron 8 of 18) 12066 ENSMUSG00000027742.13 ENSMUSG00000027742 ENSMUST00000193043 Cog6 protein_coding Interval_124848 chr5 56493104 56493647 + 0 NA Intergenic Intergenic 79165 ENSMUSG00000106326.1 ENSMUSG00000106326 ENSMUST00000197497 Gm42977 transcribed_processed_pseudogene Interval_137614 chr6 75690260 75690490 + 0 NA Intergenic Intergenic 92381 ENSMUSG00000080824.1 ENSMUSG00000080824 ENSMUST00000121642 Gm9001 processed_pseudogene Interval_5149 chr1 86045862 86047406 + 0 NA intron (ENSMUSG00000026227.11, intron 1 of 2) protein_coding-intron (ENSMUSG00000026227.11, intron 1 of 2) 771 ENSMUSG00000026227.11 ENSMUSG00000026227 ENSMUST00000165824 2810459M11Rik protein_coding Interval_116129 chr4 107991425 107993114 + 0 NA intron (ENSMUSG00000008932.10, intron 2 of 10) protein_coding-intron (ENSMUSG00000008932.10, intron 2 of 10) 23935 ENSMUSG00000008932.10 ENSMUSG00000008932 ENSMUST00000124190 Slc1a7 protein_coding Interval_56824 chr14 122287806 122288652 + 0 NA intron (ENSMUSG00000025545.10, intron 1 of 7) protein_coding-intron (ENSMUSG00000025545.10, intron 1 of 7) 30188 ENSMUSG00000025545.10 ENSMUSG00000025545 ENSMUST00000226136 Clybl protein_coding Interval_4218 chr1 71675591 71675824 + 0 NA Intergenic Intergenic -22535 ENSMUSG00000026193.15 ENSMUSG00000026193 ENSMUST00000186736 Fn1 protein_coding Interval_63499 chr15 101478941 101480042 + 0 NA promoter-TSS (ENSMUSG00000116011.1) lincRNA-promoter-TSS (ENSMUSG00000116011.1) -805 ENSMUSG00000116011.1 ENSMUSG00000116011 ENSMUST00000230173 Gm49501 lincRNA Interval_172038 chr9 123793951 123794561 + 0 NA intron (ENSMUSG00000025241.16, intron 17 of 17) protein_coding-intron (ENSMUSG00000025241.16, intron 18 of 18) -2967 ENSMUSG00000091661.2 ENSMUSG00000091661 ENSMUST00000172093 Gm17021 sense_overlapping Interval_58455 chr15 34747356 34748616 + 0 NA Intergenic Intergenic 72913 ENSMUSG00000115526.1 ENSMUSG00000115526 ENSMUST00000228853 4930413F20Rik antisense Interval_65038 chr16 18629440 18630267 + 0 NA promoter-TSS (ENSMUSG00000072214.7) protein_coding-promoter-TSS (ENSMUSG00000072214.7) -3382 ENSMUSG00000072214.7 ENSMUSG00000072214 ENSMUST00000231622 Septin5 protein_coding Interval_33081 chr11 114251668 114252789 + 0 NA intron (ENSMUSG00000075431.6, intron 1 of 1) lincRNA-intron (ENSMUSG00000075431.6, intron 1 of 1) 385 ENSMUSG00000075431.6 ENSMUSG00000075431 ENSMUST00000130963 Gm11691 lincRNA Interval_145928 chr7 42089464 42089936 + 0 NA Intergenic Intergenic 17485 ENSMUSG00000048574.9 ENSMUSG00000048574 ENSMUST00000155338 Ccnb1-ps processed_pseudogene Interval_163352 chr9 21021860 21022955 + 0 NA intron (ENSMUSG00000037405.8, intron 2 of 6) protein_coding-intron (ENSMUSG00000037405.8, intron 2 of 6) 6422 ENSMUSG00000037405.8 ENSMUSG00000037405 ENSMUST00000086399 Icam1 protein_coding Interval_29148 chr11 80696269 80697072 + 0 NA intron (ENSMUSG00000035441.14, intron 1 of 9) protein_coding-intron (ENSMUSG00000035441.14, intron 1 of 21) 83333 ENSMUSG00000035441.14 ENSMUSG00000035441 ENSMUST00000125944 Myo1d protein_coding Interval_136269 chr6 52438849 52439208 + 0 NA Intergenic Intergenic -53423 ENSMUSG00000107895.1 ENSMUSG00000107895 ENSMUST00000203771 1700094M24Rik lincRNA Interval_62989 chr15 98520812 98521808 + 0 NA intron (ENSMUSG00000022992.17, intron 8 of 9) protein_coding-intron (ENSMUSG00000022992.17, intron 8 of 9) -1432 ENSMUSG00000106463.1 ENSMUSG00000106463 ENSMUST00000199842 Mir1291 miRNA Interval_18782 chr10 90718029 90718914 + 0 NA intron (ENSMUSG00000058589.14, intron 4 of 11) protein_coding-intron (ENSMUSG00000058589.14, intron 3 of 11) -10489 ENSMUSG00000112153.1 ENSMUSG00000112153 ENSMUST00000218673 Gm47591 sense_intronic Interval_63008 chr15 98626091 98627049 + 0 NA Intergenic Intergenic -5235 ENSMUSG00000003352.14 ENSMUSG00000003352 ENSMUST00000230064 Cacnb3 protein_coding Interval_57723 chr15 16826381 16826602 + 0 NA intron (ENSMUSG00000025370.7, intron 3 of 11) protein_coding-intron (ENSMUSG00000025370.7, intron 2 of 10) 24473 ENSMUSG00000115460.1 ENSMUSG00000115460 ENSMUST00000227900 Gm49127 antisense Interval_115389 chr4 98478844 98479494 + 0 NA intron (ENSMUSG00000061859.17, intron 17 of 44) protein_coding-intron (ENSMUSG00000061859.17, intron 17 of 43) 78696 ENSMUSG00000094456.1 ENSMUSG00000094456 ENSMUST00000175382 Gm22625 miRNA Interval_118528 chr4 132302571 132303854 + 0 NA exon (ENSMUSG00000089687.2, exon 1 of 2) protein_coding-exon (ENSMUSG00000089687.2, exon 1 of 2) 173 ENSMUSG00000089687.2 ENSMUSG00000089687 ENSMUST00000040411 Rab42 protein_coding Interval_111927 chr4 32622161 32622399 + 0 NA intron (ENSMUSG00000028282.12, intron 1 of 10) protein_coding-intron (ENSMUSG00000028282.12, intron 1 of 10) 6807 ENSMUSG00000028282.12 ENSMUSG00000028282 ENSMUST00000108178 Casp8ap2 protein_coding Interval_34057 chr11 120234176 120234934 + 0 NA TTS (ENSMUSG00000085501.1) antisense-TTS (ENSMUSG00000085501.1) 1567 ENSMUSG00000085501.1 ENSMUSG00000085501 ENSMUST00000136542 Gm11772 antisense Interval_141581 chr6 129607906 129608248 + 0 NA Intergenic Intergenic 12638 ENSMUSG00000030165.16 ENSMUSG00000030165 ENSMUST00000159077 Klrd1 protein_coding Interval_14592 chr10 36791941 36792994 + 0 NA intron (ENSMUSG00000044499.11, intron 3 of 4) protein_coding-intron (ENSMUSG00000044499.11, intron 4 of 5) -16536 ENSMUSG00000088423.1 ENSMUSG00000088423 ENSMUST00000157798 Gm22554 snoRNA Interval_9879 chr1 163724814 163725628 + 0 NA promoter-TSS (ENSMUSG00000040113.14) protein_coding-promoter-TSS (ENSMUSG00000040113.14) 11 ENSMUSG00000040113.14 ENSMUSG00000040113 ENSMUST00000160495 Mettl11b protein_coding Interval_95317 chr2 106454852 106456521 + 0 NA Intergenic Intergenic 67417 ENSMUSG00000087226.1 ENSMUSG00000087226 ENSMUST00000130634 Gm14015 lincRNA Interval_155997 chr8 41676281 41677097 + 0 NA Intergenic Intergenic -18020 ENSMUSG00000094568.1 ENSMUSG00000094568 ENSMUST00000180067 Smarce1-ps1 processed_pseudogene Interval_167710 chr9 72221268 72221564 + 0 NA intron (ENSMUSG00000099190.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000099190.1, intron 1 of 2) 8890 ENSMUSG00000099190.1 ENSMUSG00000099190 ENSMUST00000184383 Gm27188 lincRNA Interval_12477 chr1 193897087 193897330 + 0 NA Intergenic Intergenic 30199 ENSMUSG00000104182.1 ENSMUSG00000104182 ENSMUST00000194272 Gm21362 processed_pseudogene Interval_31810 chr11 103066777 103068701 + 0 NA exon (ENSMUSG00000020936.8, exon 12 of 12) protein_coding-exon (ENSMUSG00000020936.8, exon 12 of 12) 33879 ENSMUSG00000020937.14 ENSMUSG00000020937 ENSMUST00000142970 Plcd3 protein_coding Interval_146480 chr7 46251603 46253086 + 0 NA intron (ENSMUSG00000009487.10, intron 11 of 16) protein_coding-intron (ENSMUSG00000009487.10, intron 11 of 55) 11341 ENSMUSG00000009487.10 ENSMUSG00000009487 ENSMUST00000209802 Otog protein_coding Interval_70232 chr17 7077148 7077876 + 0 NA intron (ENSMUSG00000094083.2, intron 2 of 3) protein_coding-intron (ENSMUSG00000094083.2, intron 2 of 3) -34947 ENSMUSG00000094889.1 ENSMUSG00000094889 ENSMUST00000158815 Gm25119 scaRNA Interval_3074 chr1 52926704 52927038 + 0 NA intron (ENSMUSG00000043629.12, intron 1 of 1) protein_coding-intron (ENSMUSG00000043629.12, intron 1 of 1) -52873 ENSMUSG00000089802.1 ENSMUSG00000089802 ENSMUST00000162523 Gm16107 processed_pseudogene Interval_113815 chr4 59002818 59003718 + 0 NA promoter-TSS (ENSMUSG00000070972.13) protein_coding-promoter-TSS (ENSMUSG00000070972.13) 58 ENSMUSG00000092345.1 ENSMUSG00000092345 ENSMUST00000174664 Gm20503 protein_coding Interval_33002 chr11 113607209 113607841 + 0 NA intron (ENSMUSG00000041654.15, intron 1 of 4) protein_coding-intron (ENSMUSG00000041654.15, intron 1 of 2) -11817 ENSMUSG00000047904.6 ENSMUSG00000047904 ENSMUST00000067591 Sstr2 protein_coding Interval_1228 chr1 17636117 17636371 + 0 NA intron (ENSMUSG00000100053.1, intron 2 of 3) antisense-intron (ENSMUSG00000100053.1, intron 2 of 3) 4837 ENSMUSG00000100053.1 ENSMUSG00000100053 ENSMUST00000186267 Gm28154 antisense Interval_13931 chr10 24789101 24790372 + 0 NA intron (ENSMUSG00000019989.8, intron 4 of 12) protein_coding-intron (ENSMUSG00000019989.8, intron 17 of 24) 46436 ENSMUSG00000019989.8 ENSMUSG00000019989 ENSMUST00000220209 Enpp3 protein_coding Interval_36491 chr12 46044953 46045609 + 0 NA Intergenic Intergenic 60938 ENSMUSG00000064800.1 ENSMUSG00000064800 ENSMUST00000082866 Gm24948 snoRNA Interval_42866 chr13 20676633 20677008 + 0 NA Intergenic Intergenic 28562 ENSMUSG00000097951.1 ENSMUSG00000097951 ENSMUST00000182329 Gm7611 processed_pseudogene Interval_35830 chr12 30902370 30902619 + 0 NA intron (ENSMUSG00000044573.16, intron 2 of 3) protein_coding-intron (ENSMUSG00000044573.16, intron 3 of 5) 9055 ENSMUSG00000044573.16 ENSMUSG00000044573 ENSMUST00000222791 Acp1 protein_coding Interval_142149 chr6 137629656 137631247 + 0 NA intron (ENSMUSG00000015766.14, intron 1 of 3) protein_coding-intron (ENSMUSG00000015766.14, intron 1 of 21) -36876 ENSMUSG00000107878.1 ENSMUSG00000107878 ENSMUST00000203153 Gm44106 TEC Interval_128126 chr5 111144364 111144584 + 0 NA intron (ENSMUSG00000033209.17, intron 5 of 22) protein_coding-intron (ENSMUSG00000033209.17, intron 5 of 23) -13837 ENSMUSG00000106153.1 ENSMUSG00000106153 ENSMUST00000198098 Gm43677 TEC Interval_42497 chr13 14142193 14142872 + 0 NA intron (ENSMUSG00000039219.18, intron 7 of 16) protein_coding-intron (ENSMUSG00000039219.18, intron 7 of 22) -23677 ENSMUSG00000077802.1 ENSMUSG00000077802 ENSMUST00000104614 n-R5s52 rRNA Interval_116264 chr4 109138068 109138703 + 0 NA intron (ENSMUSG00000028559.17, intron 2 of 22) protein_coding-intron (ENSMUSG00000028559.17, intron 3 of 23) 22812 ENSMUSG00000088014.1 ENSMUSG00000088014 ENSMUST00000157389 Gm23743 misc_RNA Interval_63566 chr15 102082919 102083310 + 0 NA intron (ENSMUSG00000058655.9, intron 2 of 8) protein_coding-intron (ENSMUSG00000058655.9, intron 2 of 14) 9250 ENSMUSG00000058655.9 ENSMUSG00000058655 ENSMUST00000229254 Eif4b protein_coding Interval_68805 chr16 87111720 87112619 + 0 NA Intergenic Intergenic 16270 ENSMUSG00000116979.1 ENSMUSG00000116979 ENSMUST00000232056 Gm32865 lincRNA Interval_137418 chr6 72139922 72140719 + 0 NA intron (ENSMUSG00000056091.12, intron 3 of 3) protein_coding-intron (ENSMUSG00000056091.12, intron 3 of 6) -17380 ENSMUSG00000108709.1 ENSMUSG00000108709 ENSMUST00000205571 4933431G14Rik antisense Interval_114373 chr4 74388929 74389141 + 0 NA intron (ENSMUSG00000028397.13, intron 19 of 21) protein_coding-intron (ENSMUSG00000028397.13, intron 19 of 21) 126226 ENSMUSG00000028397.13 ENSMUSG00000028397 ENSMUST00000150439 Kdm4c protein_coding Interval_25328 chr11 46411238 46411433 + 0 NA Intergenic Intergenic 14776 ENSMUSG00000020401.6 ENSMUSG00000020401 ENSMUST00000063166 Fam71b protein_coding Interval_22628 chr11 12382600 12383200 + 0 NA intron (ENSMUSG00000020173.17, intron 2 of 14) protein_coding-intron (ENSMUSG00000020173.17, intron 2 of 14) 29244 ENSMUSG00000020173.17 ENSMUSG00000020173 ENSMUST00000146067 Cobl protein_coding Interval_159702 chr8 98416883 98417101 + 0 NA Intergenic Intergenic -192329 ENSMUSG00000110194.1 ENSMUSG00000110194 ENSMUST00000210793 Gm7192 processed_pseudogene Interval_155529 chr8 34123810 34124995 + 0 NA exon (ENSMUSG00000071113.4, exon 3 of 3) protein_coding-exon (ENSMUSG00000071113.4, exon 3 of 3) -4194 ENSMUSG00000109869.1 ENSMUSG00000109869 ENSMUST00000210178 Gm39158 antisense Interval_168369 chr9 79744475 79745824 + 0 NA Intergenic Intergenic 14102 ENSMUSG00000032330.7 ENSMUSG00000032330 ENSMUST00000215452 Cox7a2 protein_coding Interval_138117 chr6 85285903 85288421 + 0 NA intron (ENSMUSG00000033720.12, intron 5 of 7) protein_coding-intron (ENSMUSG00000033720.12, intron 5 of 13) 46260 ENSMUSG00000033720.12 ENSMUSG00000033720 ENSMUST00000203035 Sfxn5 protein_coding Interval_29927 chr11 87797428 87797656 + 0 NA exon (ENSMUSG00000009350.13, exon 8 of 14) protein_coding-exon (ENSMUSG00000009350.13, exon 8 of 14) 3602 ENSMUSG00000085872.1 ENSMUSG00000085872 ENSMUST00000130442 Gm11505 antisense Interval_104826 chr3 75556215 75557729 + 0 NA promoter-TSS (ENSMUSG00000027834.15) protein_coding-promoter-TSS (ENSMUSG00000027834.15) -213 ENSMUSG00000027835.11 ENSMUSG00000027835 ENSMUST00000159217 Pdcd10 protein_coding Interval_61015 chr15 78785873 78787697 + 0 NA TTS (ENSMUSG00000033170.14) protein_coding-TTS (ENSMUSG00000033170.14) 15884 ENSMUSG00000033170.14 ENSMUSG00000033170 ENSMUST00000071115 Card10 protein_coding Interval_26511 chr11 58255830 58256142 + 0 NA Intergenic Intergenic -19074 ENSMUSG00000069873.4 ENSMUSG00000069873 ENSMUST00000208022 4930438A08Rik protein_coding Interval_69262 chr16 91760419 91760684 + 0 NA intron (ENSMUSG00000022957.20, intron 1 of 6) protein_coding-intron (ENSMUSG00000022957.20, intron 1 of 28) -31954 ENSMUSG00000058240.14 ENSMUSG00000058240 ENSMUST00000123751 Cryzl1 protein_coding Interval_125514 chr5 67846736 67848036 + 0 NA promoter-TSS (ENSMUSG00000037685.15) protein_coding-promoter-TSS (ENSMUSG00000037685.15) 321 ENSMUSG00000087261.2 ENSMUSG00000087261 ENSMUST00000140578 Gm15477 antisense Interval_7079 chr1 125495454 125495998 + 0 NA Intergenic Intergenic 51159 ENSMUSG00000102063.1 ENSMUSG00000102063 ENSMUST00000186830 Gm28706 lincRNA Interval_166307 chr9 58220147 58220929 + 0 NA promoter-TSS (ENSMUSG00000098886.1) miRNA-promoter-TSS (ENSMUSG00000098886.1) -612 ENSMUSG00000098886.1 ENSMUSG00000098886 ENSMUST00000184295 Mir6385 miRNA Interval_121672 chr5 4955896 4956179 + 0 NA intron (ENSMUSG00000028926.15, intron 2 of 3) protein_coding-intron (ENSMUSG00000028926.15, intron 10 of 14) 29200 ENSMUSG00000106272.1 ENSMUSG00000106272 ENSMUST00000197782 Gm22897 scaRNA Interval_118406 chr4 131183285 131183496 + 0 NA Intergenic Intergenic -55887 ENSMUSG00000088041.1 ENSMUSG00000088041 ENSMUST00000157416 Gm25261 snoRNA Interval_148068 chr7 78989348 78991010 + 0 NA Intergenic Intergenic 63144 ENSMUSG00000097441.1 ENSMUSG00000097441 ENSMUST00000180546 Gm26633 antisense Interval_33361 chr11 116121903 116122133 + 0 NA exon (ENSMUSG00000054517.9, exon 7 of 7) protein_coding-exon (ENSMUSG00000054517.9, exon 7 of 7) 9110 ENSMUSG00000054517.9 ENSMUSG00000054517 ENSMUST00000154061 Trim65 protein_coding Interval_8817 chr1 151365937 151366416 + 0 NA Intergenic Intergenic 4929 ENSMUSG00000023150.14 ENSMUSG00000023150 ENSMUST00000190872 Ivns1abp protein_coding Interval_11215 chr1 180234053 180234813 + 0 NA TTS (ENSMUSG00000010609.15) protein_coding-TTS (ENSMUSG00000010609.15) -4865 ENSMUSG00000010609.15 ENSMUSG00000010609 ENSMUST00000133340 Psen2 protein_coding Interval_145800 chr7 39191953 39192369 + 0 NA Intergenic Intergenic -17901 ENSMUSG00000101454.1 ENSMUSG00000101454 ENSMUST00000188190 Gm1988 unprocessed_pseudogene Interval_55760 chr14 99709366 99710363 + 0 NA Intergenic Intergenic 63944 ENSMUSG00000065238.1 ENSMUSG00000065238 ENSMUST00000083304 Gm22970 snRNA Interval_59604 chr15 55876685 55878941 + 0 NA intron (ENSMUSG00000060429.12, intron 1 of 1) protein_coding-intron (ENSMUSG00000060429.12, intron 1 of 6) 28497 ENSMUSG00000060429.12 ENSMUSG00000060429 ENSMUST00000140574 Sntb1 protein_coding Interval_126765 chr5 92754602 92755771 + 0 NA intron (ENSMUSG00000029381.16, intron 1 of 11) protein_coding-intron (ENSMUSG00000029381.16, intron 1 of 10) 18981 ENSMUSG00000092266.1 ENSMUSG00000092266 ENSMUST00000174621 Gm20500 sense_intronic Interval_154237 chr8 13659650 13660498 + 0 NA intron (ENSMUSG00000031453.16, intron 1 of 6) protein_coding-intron (ENSMUSG00000031453.16, intron 1 of 23) 17377 ENSMUSG00000031453.16 ENSMUSG00000031453 ENSMUST00000132439 Rasa3 protein_coding Interval_127455 chr5 104066986 104067220 + 0 NA Intergenic Intergenic 5222 ENSMUSG00000105261.1 ENSMUSG00000105261 ENSMUST00000198340 Gm43333 TEC Interval_109541 chr3 144289986 144290187 + 0 NA Intergenic Intergenic 6275 ENSMUSG00000105197.1 ENSMUSG00000105197 ENSMUST00000197669 Gm43446 lincRNA Interval_30849 chr11 96863503 96863928 + 0 NA intron (ENSMUSG00000087117.8, intron 3 of 3) processed_transcript-intron (ENSMUSG00000087117.8, intron 2 of 2) -6480 ENSMUSG00000083651.1 ENSMUSG00000083651 ENSMUST00000119349 Gm11524 processed_pseudogene Interval_102227 chr3 19645787 19646064 + 0 NA intron (ENSMUSG00000060913.6, intron 2 of 9) protein_coding-intron (ENSMUSG00000060913.6, intron 2 of 9) 1417 ENSMUSG00000060913.6 ENSMUSG00000060913 ENSMUST00000195744 Trim55 protein_coding Interval_95534 chr2 111735373 111736005 + 0 NA Intergenic Intergenic -4416 ENSMUSG00000084134.1 ENSMUSG00000084134 ENSMUST00000118569 Gm13930 processed_pseudogene Interval_58362 chr15 33596337 33596536 + 0 NA intron (ENSMUSG00000115779.1, intron 5 of 5) antisense-intron (ENSMUSG00000115779.1, intron 5 of 5) -6700 ENSMUSG00000088062.1 ENSMUSG00000088062 ENSMUST00000157437 Gm24476 rRNA Interval_108582 chr3 129267276 129267916 + 0 NA Intergenic Intergenic -17673 ENSMUSG00000106417.1 ENSMUSG00000106417 ENSMUST00000198498 Gm42628 processed_pseudogene Interval_58300 chr15 32012049 32012797 + 0 NA Intergenic Intergenic -37528 ENSMUSG00000115561.1 ENSMUSG00000115561 ENSMUST00000227417 Gm49285 TEC Interval_81405 chr18 60551164 60551384 + 0 NA TTS (ENSMUSG00000024603.8) protein_coding-TTS (ENSMUSG00000024603.8) -9494 ENSMUSG00000024604.7 ENSMUSG00000024604 ENSMUST00000160353 Rbm22 protein_coding Interval_114895 chr4 86768643 86768873 + 0 NA intron (ENSMUSG00000038024.17, intron 1 of 32) protein_coding-intron (ENSMUSG00000038024.17, intron 1 of 25) -5497 ENSMUSG00000038024.17 ENSMUSG00000038024 ENSMUST00000128710 Dennd4c protein_coding Interval_80918 chr18 50175090 50176787 + 0 NA intron (ENSMUSG00000024507.6, intron 17 of 23) protein_coding-intron (ENSMUSG00000024507.6, intron 17 of 23) 33206 ENSMUSG00000117714.1 ENSMUSG00000117714 ENSMUST00000238008 Gm50439 processed_pseudogene Interval_45294 chr13 54113765 54114482 + 0 NA Intergenic Intergenic -26812 ENSMUSG00000114042.1 ENSMUSG00000114042 ENSMUST00000220543 Gm18473 processed_pseudogene Interval_35299 chr12 20005674 20006404 + 0 NA intron (ENSMUSG00000113287.1, intron 2 of 2) unprocessed_pseudogene-intron (ENSMUSG00000113287.1, intron 2 of 2) 3262 ENSMUSG00000113287.1 ENSMUSG00000113287 ENSMUST00000221342 Gm40853 unprocessed_pseudogene Interval_156212 chr8 46101737 46102103 + 0 NA intron (ENSMUSG00000038291.16, intron 3 of 16) protein_coding-intron (ENSMUSG00000038291.16, intron 5 of 18) -5339 ENSMUSG00000088629.1 ENSMUSG00000088629 ENSMUST00000158004 Gm23030 misc_RNA Interval_131937 chr5 140905958 140907080 + 0 NA intron (ENSMUSG00000036526.8, intron 5 of 24) protein_coding-intron (ENSMUSG00000036526.8, intron 5 of 24) -76362 ENSMUSG00000000149.10 ENSMUSG00000000149 ENSMUST00000198447 Gna12 protein_coding Interval_118662 chr4 133055280 133058102 + 0 NA intron (ENSMUSG00000037692.14, intron 4 of 8) protein_coding-intron (ENSMUSG00000037692.14, intron 2 of 5) 44853 ENSMUSG00000037692.14 ENSMUSG00000037692 ENSMUST00000148518 Ahdc1 protein_coding Interval_127103 chr5 100322085 100322685 + 0 NA intron (ENSMUSG00000085915.1, intron 1 of 4) unprocessed_pseudogene-intron (ENSMUSG00000085915.1, intron 1 of 4) 32734 ENSMUSG00000085915.1 ENSMUSG00000085915 ENSMUST00000150506 Gm8091 unprocessed_pseudogene Interval_136748 chr6 58965211 58965550 + 0 NA promoter-TSS (ENSMUSG00000092323.1) antisense-promoter-TSS (ENSMUSG00000092323.1) -275 ENSMUSG00000092323.1 ENSMUSG00000092323 ENSMUST00000173978 BB365896 antisense Interval_87844 chr19 56429252 56429990 + 0 NA intron (ENSMUSG00000025076.11, intron 1 of 5) protein_coding-intron (ENSMUSG00000025076.11, intron 2 of 6) 3936 ENSMUSG00000025076.11 ENSMUSG00000025076 ENSMUST00000237765 Casp7 protein_coding Interval_76534 chr17 80817879 80818444 + 0 NA Intergenic Intergenic -78632 ENSMUSG00000112121.1 ENSMUSG00000112121 ENSMUST00000220067 C230072F16Rik lincRNA Interval_81531 chr18 61498133 61498993 + 0 NA intron (ENSMUSG00000045094.8, intron 7 of 10) protein_coding-intron (ENSMUSG00000045094.8, intron 11 of 12) 13797 ENSMUSG00000117713.1 ENSMUSG00000117713 ENSMUST00000237683 Gm46637 lincRNA Interval_85697 chr19 29714157 29714793 + 0 NA TTS (ENSMUSG00000046138.15) protein_coding-TTS (ENSMUSG00000046138.15) 16541 ENSMUSG00000024806.4 ENSMUSG00000024806 ENSMUST00000235954 Mlana protein_coding Interval_130777 chr5 130320686 130321109 + 0 NA intron (ENSMUSG00000056310.14, intron 13 of 15) protein_coding-intron (ENSMUSG00000056310.14, intron 13 of 15) 63733 ENSMUSG00000052014.6 ENSMUSG00000052014 ENSMUST00000063656 A330070K13Rik protein_coding Interval_10491 chr1 171298547 171299059 + 0 NA Intergenic Intergenic -3863 ENSMUSG00000062963.10 ENSMUSG00000062963 ENSMUST00000152621 Ufc1 protein_coding Interval_68854 chr16 87607347 87607651 + 0 NA Intergenic Intergenic 13621 ENSMUSG00000064670.1 ENSMUSG00000064670 ENSMUST00000082736 Gm22808 snRNA Interval_74851 chr17 56869218 56870968 + 0 NA intron (ENSMUSG00000024207.8, intron 2 of 14) protein_coding-intron (ENSMUSG00000024207.8, intron 2 of 14) 4354 ENSMUSG00000024207.8 ENSMUSG00000024207 ENSMUST00000043062 Acsbg2 protein_coding Interval_152625 chr7 135485203 135486659 + 0 NA promoter-TSS (ENSMUSG00000109598.1) lincRNA-promoter-TSS (ENSMUSG00000109598.1) -98 ENSMUSG00000109598.1 ENSMUSG00000109598 ENSMUST00000209224 Gm36356 lincRNA Interval_164878 chr9 42756939 42757203 + 0 NA intron (ENSMUSG00000032017.14, intron 3 of 20) protein_coding-intron (ENSMUSG00000032017.14, intron 1 of 18) 105058 ENSMUSG00000076355.2 ENSMUSG00000076355 ENSMUST00000102400 Gm27509 miRNA Interval_171227 chr9 115390909 115391308 + 0 NA Intergenic Intergenic 9009 ENSMUSG00000080636.1 ENSMUSG00000080636 ENSMUST00000116986 Gm25510 miRNA Interval_93840 chr2 77363847 77364114 + 0 NA Intergenic Intergenic 28621 ENSMUSG00000082006.1 ENSMUSG00000082006 ENSMUST00000122325 Gm13649 processed_pseudogene Interval_129595 chr5 121206320 121206733 + 0 NA promoter-TSS (ENSMUSG00000029614.13) protein_coding-promoter-TSS (ENSMUSG00000029614.13) -198 ENSMUSG00000029614.13 ENSMUSG00000029614 ENSMUST00000138621 Rpl6 protein_coding Interval_166083 chr9 56497710 56499026 + 0 NA Intergenic Intergenic 8293 ENSMUSG00000111343.1 ENSMUSG00000111343 ENSMUST00000216940 Gm47175 TEC Interval_123259 chr5 30945158 30945828 + 0 NA promoter-TSS (ENSMUSG00000029161.7) protein_coding-promoter-TSS (ENSMUSG00000029161.7) -87 ENSMUSG00000029161.7 ENSMUSG00000029161 ENSMUST00000202627 Cgref1 protein_coding Interval_157930 chr8 76467996 76468667 + 0 NA Intergenic Intergenic -53291 ENSMUSG00000110485.1 ENSMUSG00000110485 ENSMUST00000212103 Gm45740 lincRNA Interval_162998 chr9 14363522 14363907 + 0 NA intron (ENSMUSG00000037419.9, intron 2 of 2) protein_coding-intron (ENSMUSG00000037419.9, intron 1 of 1) 17269 ENSMUSG00000037419.9 ENSMUSG00000037419 ENSMUST00000214236 Endod1 protein_coding Interval_145892 chr7 41499042 41500829 + 0 NA promoter-TSS (ENSMUSG00000092592.1) protein_coding-promoter-TSS (ENSMUSG00000092592.1) -518 ENSMUSG00000092592.1 ENSMUSG00000092592 ENSMUST00000094532 Gm20449 protein_coding Interval_98865 chr2 155632176 155633307 + 0 NA promoter-TSS (ENSMUSG00000074652.3) protein_coding-promoter-TSS (ENSMUSG00000074652.3) -710 ENSMUSG00000074652.3 ENSMUSG00000074652 ENSMUST00000154656 Myh7b protein_coding Interval_75297 chr17 65750473 65751089 + 0 NA intron (ENSMUSG00000056515.9, intron 1 of 2) protein_coding-intron (ENSMUSG00000056515.9, intron 1 of 6) 21859 ENSMUSG00000056515.9 ENSMUSG00000056515 ENSMUST00000233258 Rab31 protein_coding Interval_52183 chr14 38962290 38962598 + 0 NA intron (ENSMUSG00000041014.17, intron 2 of 8) protein_coding-intron (ENSMUSG00000041014.17, intron 2 of 9) -62500 ENSMUSG00000098723.1 ENSMUSG00000098723 ENSMUST00000184893 Gm27332 miRNA Interval_55771 chr14 99885305 99885758 + 0 NA intron (ENSMUSG00000072294.5, intron 1 of 1) protein_coding-intron (ENSMUSG00000072294.5, intron 6 of 6) 14860 ENSMUSG00000072294.5 ENSMUSG00000072294 ENSMUST00000226544 Klf12 protein_coding Interval_6742 chr1 119119784 119120602 + 0 NA Intergenic Intergenic -37393 ENSMUSG00000096939.1 ENSMUSG00000096939 ENSMUST00000181691 Gm8321 processed_pseudogene Interval_97322 chr2 134130199 134130465 + 0 NA Intergenic Intergenic 423975 ENSMUSG00000027261.2 ENSMUSG00000027261 ENSMUST00000140794 Hao1 protein_coding Interval_14537 chr10 35114188 35114557 + 0 NA Intergenic Intergenic 2174 ENSMUSG00000077749.1 ENSMUSG00000077749 ENSMUST00000104561 Gm26341 snoRNA Interval_33012 chr11 113661316 113661549 + 0 NA exon (ENSMUSG00000041629.7, exon 3 of 3) protein_coding-exon (ENSMUSG00000041629.7, exon 3 of 3) 2854 ENSMUSG00000018661.17 ENSMUSG00000018661 ENSMUST00000137878 Cog1 protein_coding Interval_76622 chr17 82857146 82858552 + 0 NA Intergenic Intergenic -98147 ENSMUSG00000117472.1 ENSMUSG00000117472 ENSMUST00000234284 Gm4601 processed_pseudogene Interval_104723 chr3 69754205 69755484 + 0 NA exon (ENSMUSG00000027787.14, exon 16 of 16) protein_coding-exon (ENSMUSG00000027787.14, exon 16 of 16) 30608 ENSMUSG00000027787.14 ENSMUSG00000027787 ENSMUST00000150210 Nmd3 protein_coding Interval_102557 chr3 27744592 27746180 + 0 NA Intergenic Intergenic -34988 ENSMUSG00000039286.12 ENSMUSG00000039286 ENSMUST00000193779 Fndc3b protein_coding Interval_11554 chr1 182660771 182661271 + 0 NA Intergenic Intergenic -18918 ENSMUSG00000104376.1 ENSMUSG00000104376 ENSMUST00000192593 Gm37516 TEC Interval_6381 chr1 106617750 106618236 + 0 NA intron (ENSMUSG00000057329.7, intron 1 of 1) protein_coding-intron (ENSMUSG00000057329.7, intron 1 of 1) -11123 ENSMUSG00000103348.1 ENSMUSG00000103348 ENSMUST00000192399 Gm37053 TEC Interval_54544 chr14 70593356 70593550 + 0 NA intron (ENSMUSG00000022095.9, intron 2 of 16) protein_coding-intron (ENSMUSG00000022095.9, intron 2 of 16) 6382 ENSMUSG00000022095.9 ENSMUSG00000022095 ENSMUST00000022690 Fam160b2 protein_coding Interval_170330 chr9 107156350 107157127 + 0 NA intron (ENSMUSG00000039716.12, intron 2 of 4) protein_coding-intron (ENSMUSG00000039716.12, intron 3 of 52) -8239 ENSMUSG00000077494.1 ENSMUSG00000077494 ENSMUST00000104306 Gm23595 snoRNA Interval_102251 chr3 20004293 20004510 + 0 NA intron (ENSMUSG00000027615.14, intron 5 of 7) protein_coding-intron (ENSMUSG00000003617.16, intron 18 of 19) 30893 ENSMUSG00000027615.14 ENSMUSG00000027615 ENSMUST00000133094 Hps3 protein_coding Interval_41836 chr13 3163260 3163880 + 0 NA intron (ENSMUSG00000091304.2, intron 2 of 4) transcribed_unprocessed_pseudogene-intron (ENSMUSG00000091304.2, intron 2 of 4) 14095 ENSMUSG00000091304.2 ENSMUSG00000091304 ENSMUST00000168736 Speer6-ps1 transcribed_unprocessed_pseudogene Interval_121118 chr4 153224685 153225132 + 0 NA Intergenic Intergenic 6732 ENSMUSG00000087454.1 ENSMUSG00000087454 ENSMUST00000126141 Gm13174 lincRNA Interval_143394 chr7 6351075 6351484 + 0 NA intron (ENSMUSG00000109398.2, intron 4 of 4) protein_coding-intron (ENSMUSG00000109398.2, intron 4 of 4) -7274 ENSMUSG00000109080.1 ENSMUSG00000109080 ENSMUST00000208218 Gm38944 lincRNA Interval_172943 chrX 57052838 57054327 + 0 NA promoter-TSS (ENSMUSG00000067873.11) protein_coding-promoter-TSS (ENSMUSG00000067873.11) -316 ENSMUSG00000067873.11 ENSMUSG00000067873 ENSMUST00000134785 Htatsf1 protein_coding Interval_46125 chr13 61863129 61863504 + 0 NA Intergenic Intergenic -39652 ENSMUSG00000080451.1 ENSMUSG00000080451 ENSMUST00000116801 Gm24193 miRNA Interval_160875 chr8 114452652 114453165 + 0 NA exon (ENSMUSG00000004637.15, exon 5 of 5) protein_coding-exon (ENSMUSG00000004637.15, exon 5 of 5) 34822 ENSMUSG00000008874.3 ENSMUSG00000008874 ENSMUST00000009018 Clec3a protein_coding Interval_17587 chr10 78006573 78006954 + 0 NA TTS (ENSMUSG00000020277.10) protein_coding-TTS (ENSMUSG00000020277.10) 2973 ENSMUSG00000020277.10 ENSMUSG00000020277 ENSMUST00000220304 Pfkl protein_coding Interval_135705 chr6 43743462 43744974 + 0 NA Intergenic Intergenic 23092 ENSMUSG00000107465.1 ENSMUSG00000107465 ENSMUST00000203126 Gm5990 processed_pseudogene Interval_135760 chr6 47087622 47087810 + 0 NA intron (ENSMUSG00000039419.17, intron 2 of 2) protein_coding-intron (ENSMUSG00000039419.17, intron 18 of 23) 42560 ENSMUSG00000107952.1 ENSMUSG00000107952 ENSMUST00000203583 Gm6352 processed_pseudogene Interval_155691 chr8 36177747 36177967 + 0 NA exon (ENSMUSG00000110116.1, exon 2 of 2) lincRNA-exon (ENSMUSG00000110116.1, exon 2 of 2) 1716 ENSMUSG00000110116.1 ENSMUSG00000110116 ENSMUST00000210943 4933430A20Rik lincRNA Interval_68439 chr16 76656181 76656816 + 0 NA Intergenic Intergenic -24015 ENSMUSG00000108903.1 ENSMUSG00000108903 ENSMUST00000208702 Gm45029 lincRNA Interval_111270 chr4 16250996 16251924 + 0 NA intron (ENSMUSG00000085112.1, intron 4 of 6) processed_transcript-intron (ENSMUSG00000085112.1, intron 4 of 6) 5191 ENSMUSG00000083725.1 ENSMUSG00000083725 ENSMUST00000118093 Gm11865 processed_pseudogene Interval_55524 chr14 90585255 90585505 + 0 NA Intergenic Intergenic 106065 ENSMUSG00000115292.1 ENSMUSG00000115292 ENSMUST00000226296 Gm33246 lincRNA Interval_44240 chr13 42792393 42792752 + 0 NA intron (ENSMUSG00000054728.17, intron 3 of 13) protein_coding-intron (ENSMUSG00000054728.17, intron 1 of 11) -4314 ENSMUSG00000089710.1 ENSMUSG00000089710 ENSMUST00000160241 Gm15810 antisense Interval_1914 chr1 34514520 34514744 + 0 NA Intergenic Intergenic 9375 ENSMUSG00000101116.1 ENSMUSG00000101116 ENSMUST00000188334 Gm28416 processed_pseudogene Interval_534 chr1 7052225 7053422 + 0 NA Intergenic Intergenic 16908 ENSMUSG00000103629.1 ENSMUSG00000103629 ENSMUST00000195648 Gm5694 processed_pseudogene Interval_9548 chr1 159278676 159278940 + 0 NA intron (ENSMUSG00000040782.12, intron 4 of 7) protein_coding-intron (ENSMUSG00000040782.12, intron 9 of 19) 43098 ENSMUSG00000103572.1 ENSMUSG00000103572 ENSMUST00000193750 Gm37115 TEC Interval_110535 chr4 3677503 3679128 + 0 NA exon (ENSMUSG00000042228.14, exon 1 of 13) protein_coding-exon (ENSMUSG00000042228.14, exon 1 of 13) 185 ENSMUSG00000042228.14 ENSMUSG00000042228 ENSMUST00000137943 Lyn protein_coding Interval_105141 chr3 82417871 82419695 + 0 NA Intergenic Intergenic 38710 ENSMUSG00000033900.13 ENSMUSG00000033900 ENSMUST00000195793 Map9 protein_coding Interval_36771 chr12 53512939 53513130 + 0 NA intron (ENSMUSG00000021010.9, intron 3 of 11) protein_coding-intron (ENSMUSG00000021010.9, intron 3 of 11) -203188 ENSMUSG00000113179.1 ENSMUSG00000113179 ENSMUST00000221214 1700030L22Rik antisense Interval_45642 chr13 56437945 56439481 + 0 NA intron (ENSMUSG00000021509.5, intron 1 of 7) protein_coding-intron (ENSMUSG00000021509.5, intron 1 of 7) 358 ENSMUSG00000021509.5 ENSMUSG00000021509 ENSMUST00000021971 Slc25a48 protein_coding Interval_17696 chr10 79579025 79581598 + 0 NA promoter-TSS (ENSMUSG00000020317.14) protein_coding-promoter-TSS (ENSMUSG00000020317.14) -191 ENSMUSG00000020317.14 ENSMUSG00000020317 ENSMUST00000020566 Theg protein_coding Interval_162586 chr9 5298408 5298816 + 0 NA promoter-TSS (ENSMUSG00000025888.6) protein_coding-promoter-TSS (ENSMUSG00000025888.6) -4426 ENSMUSG00000025888.6 ENSMUSG00000025888 ENSMUST00000238730 Casp1 protein_coding Interval_81641 chr18 62778459 62779284 + 0 NA Intergenic Intergenic -22556 ENSMUSG00000041789.7 ENSMUSG00000041789 ENSMUST00000048109 2700046A07Rik lincRNA Interval_53141 chr14 54685821 54687244 + 0 NA promoter-TSS (ENSMUSG00000022185.19) protein_coding-promoter-TSS (ENSMUSG00000022185.19) 295 ENSMUSG00000040822.7 ENSMUSG00000040822 ENSMUST00000227269 1700123O20Rik protein_coding Interval_1408 chr1 21399273 21400602 + 0 NA exon (ENSMUSG00000028033.16, exon 14 of 14) protein_coding-exon (ENSMUSG00000028033.16, exon 14 of 14) 9031 ENSMUSG00000085679.2 ENSMUSG00000085679 ENSMUST00000126985 Gm16328 processed_pseudogene Interval_165065 chr9 44261470 44261704 + 0 NA exon (ENSMUSG00000032109.15, exon 6 of 6) protein_coding-exon (ENSMUSG00000032109.15, exon 6 of 6) 4944 ENSMUSG00000032109.15 ENSMUSG00000032109 ENSMUST00000213803 Nlrx1 protein_coding Interval_143969 chr7 18687867 18688156 + 0 NA Intergenic Intergenic -1826 ENSMUSG00000063305.10 ENSMUSG00000063305 ENSMUST00000076677 Psg20 protein_coding Interval_95596 chr2 112620383 112620723 + 0 NA intron (ENSMUSG00000003604.14, intron 1 of 4) protein_coding-intron (ENSMUSG00000003604.14, intron 2 of 5) 6523 ENSMUSG00000105420.1 ENSMUSG00000105420 ENSMUST00000199821 Gm44374 miRNA Interval_82844 chr18 77410891 77411395 + 0 NA intron (ENSMUSG00000032818.16, intron 34 of 39) protein_coding-intron (ENSMUSG00000032818.16, intron 33 of 38) 56005 ENSMUSG00000025427.15 ENSMUSG00000025427 ENSMUST00000182146 Rnf165 protein_coding Interval_20334 chr10 116956221 116957466 + 0 NA TTS (ENSMUSG00000069518.5) protein_coding-TTS (ENSMUSG00000069518.5) -6074 ENSMUSG00000064181.6 ENSMUSG00000064181 ENSMUST00000218391 Rab3ip protein_coding Interval_5707 chr1 91098820 91099218 + 0 NA intron (ENSMUSG00000026305.15, intron 12 of 24) protein_coding-intron (ENSMUSG00000026305.15, intron 2 of 12) 45433 ENSMUSG00000026305.15 ENSMUSG00000026305 ENSMUST00000187532 Lrrfip1 protein_coding Interval_5818 chr1 92148833 92149493 + 0 NA promoter-TSS (ENSMUSG00000026313.16) protein_coding-promoter-TSS (ENSMUSG00000026313.16) 46531 ENSMUSG00000026313.16 ENSMUSG00000026313 ENSMUST00000212408 Hdac4 protein_coding Interval_13509 chr10 18870264 18871374 + 0 NA Intergenic Intergenic 16210 ENSMUSG00000111318.1 ENSMUSG00000111318 ENSMUST00000214387 Gm48483 lincRNA Interval_158846 chr8 87217358 87217867 + 0 NA intron (ENSMUSG00000098257.1, intron 2 of 4) lincRNA-intron (ENSMUSG00000098257.1, intron 2 of 4) 14586 ENSMUSG00000098257.1 ENSMUSG00000098257 ENSMUST00000183344 Gm27169 lincRNA Interval_62712 chr15 96413502 96413766 + 0 NA TTS (ENSMUSG00000033228.8) protein_coding-TTS (ENSMUSG00000033228.8) 8776 ENSMUSG00000093529.1 ENSMUSG00000093529 ENSMUST00000176951 Gm25397 miRNA Interval_57278 chr15 8381293 8381554 + 0 NA intron (ENSMUSG00000022141.7, intron 1 of 46) protein_coding-intron (ENSMUSG00000022141.7, intron 1 of 46) 63040 ENSMUSG00000022141.7 ENSMUSG00000022141 ENSMUST00000052965 Nipbl protein_coding Interval_46009 chr13 60049354 60049639 + 0 NA intron (ENSMUSG00000114531.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000114531.1, intron 1 of 2) 8129 ENSMUSG00000114795.1 ENSMUSG00000114795 ENSMUST00000223983 Gm48396 lincRNA Interval_6424 chr1 107878611 107878849 + 0 NA Intergenic Intergenic -14244 ENSMUSG00000077237.1 ENSMUSG00000077237 ENSMUST00000104049 Gm22438 snoRNA Interval_16230 chr10 61569889 61571727 + 0 NA promoter-TSS (ENSMUSG00000112255.1) TEC-promoter-TSS (ENSMUSG00000112255.1) -103 ENSMUSG00000112255.1 ENSMUSG00000112255 ENSMUST00000219114 Gm47594 TEC Interval_15581 chr10 51805028 51805290 + 0 NA Intergenic Intergenic -18218 ENSMUSG00000112337.1 ENSMUSG00000112337 ENSMUST00000217696 Gm47614 lincRNA Interval_48075 chr13 95806946 95807556 + 0 NA intron (ENSMUSG00000021676.10, intron 2 of 6) protein_coding-intron (ENSMUSG00000021676.10, intron 2 of 35) 70668 ENSMUSG00000118436.1 ENSMUSG00000118436 ENSMUST00000238548 Gm32880 antisense Interval_47583 chr13 89539003 89540873 + 0 NA exon (ENSMUSG00000021613.9, exon 1 of 5) protein_coding-exon (ENSMUSG00000021613.9, exon 1 of 5) 38481 ENSMUSG00000094463.2 ENSMUSG00000094463 ENSMUST00000178288 Gm8546 processed_pseudogene Interval_121169 chr4 153753265 153754265 + 0 NA Intergenic Intergenic -122619 ENSMUSG00000077519.1 ENSMUSG00000077519 ENSMUST00000104331 Gm25880 snoRNA Interval_117121 chr4 119689500 119690397 + 0 NA Intergenic Intergenic -31167 ENSMUSG00000032978.14 ENSMUSG00000032978 ENSMUST00000044426 Guca2b protein_coding Interval_125862 chr5 75121312 75121635 + 0 NA intron (ENSMUSG00000107192.1, intron 1 of 3) lincRNA-intron (ENSMUSG00000107192.1, intron 1 of 3) 11152 ENSMUSG00000107192.1 ENSMUSG00000107192 ENSMUST00000202993 Gm19583 lincRNA Interval_83713 chr19 3893981 3896500 + 0 NA TTS (ENSMUSG00000001750.16) protein_coding-TTS (ENSMUSG00000001750.16) 11000 ENSMUSG00000001750.16 ENSMUSG00000001750 ENSMUST00000236590 Tcirg1 protein_coding Interval_36797 chr12 54112883 54113919 + 0 NA Intergenic Intergenic -6516 ENSMUSG00000112549.1 ENSMUSG00000112549 ENSMUST00000219480 Gm35818 lincRNA Interval_157133 chr8 66052484 66052696 + 0 NA intron (ENSMUSG00000036469.16, intron 3 of 7) protein_coding-intron (ENSMUSG00000036469.16, intron 1 of 5) -50138 ENSMUSG00000064887.1 ENSMUSG00000064887 ENSMUST00000082953 Gm24205 snRNA Interval_173092 chrX 71425885 71426382 + 0 NA intron (ENSMUSG00000035776.14, intron 7 of 8) protein_coding-intron (ENSMUSG00000035776.14, intron 8 of 9) -13581 ENSMUSG00000085284.1 ENSMUSG00000085284 ENSMUST00000123707 Gm16189 antisense Interval_71468 chr17 23978735 23979628 + 0 NA intron (ENSMUSG00000024124.10, intron 1 of 6) protein_coding-intron (ENSMUSG00000024124.10, intron 1 of 6) 1385 ENSMUSG00000024124.10 ENSMUSG00000024124 ENSMUST00000147626 Prss30 protein_coding Interval_107926 chr3 116892758 116893236 + 0 NA intron (ENSMUSG00000033386.10, intron 2 of 3) protein_coding-intron (ENSMUSG00000033386.10, intron 9 of 16) 33430 ENSMUSG00000033386.10 ENSMUSG00000033386 ENSMUST00000199030 Frrs1 protein_coding Interval_133074 chr5 149658213 149659153 + 0 NA Intergenic Intergenic 2540 ENSMUSG00000080002.2 ENSMUSG00000080002 ENSMUST00000116118 Gm5566 processed_pseudogene Interval_109697 chr3 146047449 146048176 + 0 NA promoter-TSS (ENSMUSG00000043020.13) protein_coding-promoter-TSS (ENSMUSG00000043020.13) -627 ENSMUSG00000043020.13 ENSMUSG00000043020 ENSMUST00000161104 Wdr63 protein_coding Interval_166952 chr9 64119811 64121651 + 0 NA promoter-TSS (ENSMUSG00000032401.15) protein_coding-promoter-TSS (ENSMUSG00000032401.15) 3559 ENSMUSG00000032401.15 ENSMUSG00000032401 ENSMUST00000132018 Lctl protein_coding Interval_16223 chr10 61523684 61524832 + 0 NA intron (ENSMUSG00000037151.8, intron 2 of 4) protein_coding-intron (ENSMUSG00000037151.8, intron 2 of 4) -13673 ENSMUSG00000112710.1 ENSMUSG00000112710 ENSMUST00000219782 Gm17829 processed_pseudogene Interval_111337 chr4 19334914 19336268 + 0 NA intron (ENSMUSG00000056494.7, intron 3 of 17) protein_coding-intron (ENSMUSG00000056494.7, intron 3 of 17) 37258 ENSMUSG00000082320.1 ENSMUSG00000082320 ENSMUST00000118921 Gm11877 processed_pseudogene Interval_112077 chr4 34394215 34394621 + 0 NA Intergenic Intergenic -4571 ENSMUSG00000082649.1 ENSMUSG00000082649 ENSMUST00000121908 Gm12754 processed_pseudogene Interval_138850 chr6 92548065 92549034 + 0 NA intron (ENSMUSG00000030020.13, intron 2 of 8) protein_coding-intron (ENSMUSG00000030020.13, intron 2 of 8) -13228 ENSMUSG00000098130.1 ENSMUSG00000098130 ENSMUST00000182175 Gm17797 processed_pseudogene Interval_125871 chr5 75167440 75167741 + 0 NA intron (ENSMUSG00000029231.15, intron 4 of 15) protein_coding-intron (ENSMUSG00000029231.15, intron 4 of 22) -9241 ENSMUSG00000099060.1 ENSMUSG00000099060 ENSMUST00000183797 Mir7025 miRNA Interval_132454 chr5 145058878 145060098 + 0 NA intron (ENSMUSG00000038770.17, intron 4 of 7) protein_coding-intron (ENSMUSG00000038770.17, intron 4 of 7) -8029 ENSMUSG00000118480.1 ENSMUSG00000118480 ENSMUST00000238523 Gm50458 unitary_pseudogene Interval_79556 chr18 33750048 33750667 + 0 NA Intergenic Intergenic -44582 ENSMUSG00000087590.2 ENSMUSG00000087590 ENSMUST00000179138 Epb41l4aos lincRNA Interval_9650 chr1 160734464 160735868 + 0 NA TTS (ENSMUSG00000026721.16) protein_coding-TTS (ENSMUSG00000026721.16) -7006 ENSMUSG00000103632.1 ENSMUSG00000103632 ENSMUST00000193473 Gm38329 TEC Interval_88943 chr2 13290714 13291345 + 0 NA intron (ENSMUSG00000026726.10, intron 60 of 66) protein_coding-intron (ENSMUSG00000026726.10, intron 60 of 66) 19427 ENSMUSG00000086358.2 ENSMUSG00000086358 ENSMUST00000193685 Gm13270 processed_transcript Interval_163459 chr9 21536992 21537245 + 0 NA intron (ENSMUSG00000057191.13, intron 3 of 6) protein_coding-intron (ENSMUSG00000057191.13, intron 4 of 7) -3133 ENSMUSG00000092261.1 ENSMUSG00000092261 ENSMUST00000173684 Gm20519 processed_pseudogene Interval_5722 chr1 91230859 91232059 + 0 NA Intergenic Intergenic -19197 ENSMUSG00000034343.14 ENSMUSG00000034343 ENSMUST00000185697 Ube2f protein_coding Interval_35021 chr12 16711650 16712116 + 0 NA promoter-TSS (ENSMUSG00000036523.16) protein_coding-promoter-TSS (ENSMUSG00000036523.16) 39643 ENSMUSG00000114049.1 ENSMUSG00000114049 ENSMUST00000223113 Gm48140 antisense Interval_73829 chr17 44239019 44239975 + 0 NA intron (ENSMUSG00000023959.10, intron 2 of 5) protein_coding-intron (ENSMUSG00000023959.10, intron 2 of 5) 104729 ENSMUSG00000023959.10 ENSMUSG00000023959 ENSMUST00000233193 Clic5 protein_coding Interval_53895 chr14 63172719 63172947 + 0 NA intron (ENSMUSG00000021273.11, intron 3 of 9) protein_coding-intron (ENSMUSG00000021273.11, intron 1 of 7) -7908 ENSMUSG00000021273.11 ENSMUSG00000021273 ENSMUST00000224267 Fdft1 protein_coding Interval_114992 chr4 88208744 88209633 + 0 NA intron (ENSMUSG00000038368.16, intron 11 of 43) protein_coding-intron (ENSMUSG00000038368.16, intron 11 of 43) 57492 ENSMUSG00000082597.1 ENSMUSG00000082597 ENSMUST00000117297 Gm12645 processed_pseudogene Interval_111315 chr4 18544111 18544700 + 0 NA intron (ENSMUSG00000087402.1, intron 2 of 10) processed_transcript-intron (ENSMUSG00000087402.1, intron 2 of 10) 72216 ENSMUSG00000083660.1 ENSMUSG00000083660 ENSMUST00000119687 Gm11853 processed_pseudogene Interval_55048 chr14 77507945 77508168 + 0 NA intron (ENSMUSG00000022012.9, intron 5 of 6) protein_coding-intron (ENSMUSG00000022012.9, intron 6 of 18) -6616 ENSMUSG00000067973.11 ENSMUSG00000067973 ENSMUST00000163416 Gm6994 antisense Interval_73212 chr17 35593744 35594793 + 0 NA Intergenic Intergenic -7310 ENSMUSG00000090509.2 ENSMUSG00000090509 ENSMUST00000171166 Sfta2 protein_coding Interval_12743 chr10 4628775 4628993 + 0 NA intron (ENSMUSG00000019768.16, intron 1 of 8) protein_coding-intron (ENSMUSG00000019768.16, intron 1 of 8) 17291 ENSMUSG00000019768.16 ENSMUSG00000019768 ENSMUST00000137012 Esr1 protein_coding Interval_57913 chr15 25364024 25365412 + 0 NA TTS (ENSMUSG00000045763.8) protein_coding-TTS (ENSMUSG00000045763.8) -32070 ENSMUSG00000115355.1 ENSMUSG00000115355 ENSMUST00000228450 4930445E18Rik lincRNA Interval_124772 chr5 53822735 53823518 + 0 NA intron (ENSMUSG00000039178.9, intron 1 of 2) protein_coding-intron (ENSMUSG00000039178.9, intron 1 of 20) -67978 ENSMUSG00000039178.9 ENSMUSG00000039178 ENSMUST00000202880 Tbc1d19 protein_coding Interval_160888 chr8 114661822 114662041 + 0 NA intron (ENSMUSG00000004637.15, intron 1 of 2) protein_coding-intron (ENSMUSG00000004637.15, intron 5 of 8) -19817 ENSMUSG00000089723.1 ENSMUSG00000089723 ENSMUST00000160544 Gm16117 antisense Interval_87729 chr19 55485987 55486724 + 0 NA intron (ENSMUSG00000024983.10, intron 5 of 7) protein_coding-intron (ENSMUSG00000024983.10, intron 5 of 7) 170028 ENSMUSG00000024983.10 ENSMUSG00000024983 ENSMUST00000224396 Vti1a protein_coding Interval_119839 chr4 140402222 140403310 + 0 NA Intergenic Intergenic 11618 ENSMUSG00000086960.1 ENSMUSG00000086960 ENSMUST00000156409 Gm13017 lincRNA Interval_55788 chr14 100187287 100187744 + 0 NA intron (ENSMUSG00000072294.5, intron 1 of 7) protein_coding-intron (ENSMUSG00000072294.5, intron 1 of 3) -25674 ENSMUSG00000054391.12 ENSMUSG00000054391 ENSMUST00000145018 4930517O19Rik antisense Interval_127570 chr5 105442738 105443843 + 0 NA intron (ENSMUSG00000070639.5, intron 1 of 4) protein_coding-intron (ENSMUSG00000070639.5, intron 1 of 4) 27515 ENSMUSG00000070639.5 ENSMUSG00000070639 ENSMUST00000112707 Lrrc8b protein_coding Interval_108134 chr3 121784191 121784539 + 0 NA intron (ENSMUSG00000028127.10, intron 5 of 21) protein_coding-intron (ENSMUSG00000028127.10, intron 6 of 22) 4207 ENSMUSG00000105597.1 ENSMUSG00000105597 ENSMUST00000198169 4633401B06Rik TEC Interval_143424 chr7 6677262 6677820 + 0 NA exon (ENSMUSG00000002266.17, exon 8 of 8) protein_coding-exon (ENSMUSG00000002266.17, exon 8 of 8) 11131 ENSMUSG00000002266.17 ENSMUSG00000002266 ENSMUST00000213399 Zim1 protein_coding Interval_115579 chr4 101002529 101003485 + 0 NA TTS (ENSMUSG00000028532.14) protein_coding-TTS (ENSMUSG00000028532.14) 8297 ENSMUSG00000028532.14 ENSMUSG00000028532 ENSMUST00000136430 Cachd1 protein_coding Interval_95729 chr2 115348456 115348723 + 0 NA Intergenic Intergenic 4204 ENSMUSG00000086197.1 ENSMUSG00000086197 ENSMUST00000154367 Gm13976 lincRNA Interval_61066 chr15 79030568 79031417 + 0 NA promoter-TSS (ENSMUSG00000116378.1) protein_coding-promoter-TSS (ENSMUSG00000116378.1) 91 ENSMUSG00000116378.1 ENSMUSG00000116378 ENSMUST00000171999 Gcat protein_coding Interval_73135 chr17 35012131 35012392 + 0 NA promoter-TSS (ENSMUSG00000007029.16) protein_coding-promoter-TSS (ENSMUSG00000007029.16) -4377 ENSMUSG00000007030.8 ENSMUSG00000007030 ENSMUST00000172499 Vwa7 protein_coding Interval_153719 chr8 5116800 5117007 + 0 NA promoter-TSS (ENSMUSG00000109181.1) processed_pseudogene-promoter-TSS (ENSMUSG00000109181.1) -458 ENSMUSG00000109181.1 ENSMUSG00000109181 ENSMUST00000208940 Gm5605 processed_pseudogene Interval_656 chr1 9613388 9613669 + 0 NA intron (ENSMUSG00000067879.3, intron 3 of 5) protein_coding-intron (ENSMUSG00000067879.3, intron 3 of 5) 12329 ENSMUSG00000067879.3 ENSMUSG00000067879 ENSMUST00000088666 Vxn protein_coding Interval_79244 chr18 27183296 27183800 + 0 NA Intergenic Intergenic -92361 ENSMUSG00000117646.1 ENSMUSG00000117646 ENSMUST00000234185 Gm49977 processed_pseudogene Interval_49230 chr13 109675970 109676296 + 0 NA intron (ENSMUSG00000021699.17, intron 1 of 14) protein_coding-intron (ENSMUSG00000021699.17, intron 1 of 14) -227676 ENSMUSG00000084651.1 ENSMUSG00000084651 ENSMUST00000122702 Mir1904 miRNA Interval_13120 chr10 11753056 11753544 + 0 NA Intergenic Intergenic 85595 ENSMUSG00000112233.1 ENSMUSG00000112233 ENSMUST00000219464 Gm48698 processed_pseudogene Interval_149348 chr7 97622686 97623343 + 0 NA intron (ENSMUSG00000035623.14, intron 2 of 14) protein_coding-intron (ENSMUSG00000035623.14, intron 2 of 15) 22098 ENSMUSG00000086433.1 ENSMUSG00000086433 ENSMUST00000126902 Rsf1os1 antisense Interval_106885 chr3 101532399 101533140 + 0 NA Intergenic Intergenic 48286 ENSMUSG00000104737.1 ENSMUSG00000104737 ENSMUST00000197360 Gm42937 sense_intronic Interval_12034 chr1 188997366 188997533 + 0 NA exon (ENSMUSG00000026608.13, exon 1 of 2) protein_coding-exon (ENSMUSG00000026608.13, exon 1 of 2) 10392 ENSMUSG00000026608.13 ENSMUSG00000026608 ENSMUST00000193273 Kctd3 protein_coding Interval_70840 chr17 15240434 15241303 + 0 NA promoter-TSS (ENSMUSG00000097624.2) lincRNA-promoter-TSS (ENSMUSG00000097624.2) 7049 ENSMUSG00000097624.2 ENSMUSG00000097624 ENSMUST00000181658 Gm5091 lincRNA Interval_143995 chr7 18852498 18853454 + 0 NA intron (ENSMUSG00000040987.15, intron 3 of 7) protein_coding-intron (ENSMUSG00000040987.15, intron 2 of 5) 13010 ENSMUSG00000040987.15 ENSMUSG00000040987 ENSMUST00000207014 Mill2 protein_coding Interval_62972 chr15 98387714 98388249 + 0 NA Intergenic Intergenic 3974 ENSMUSG00000116514.1 ENSMUSG00000116514 ENSMUST00000230662 Gm49443 processed_pseudogene Interval_9734 chr1 161442887 161444147 + 0 NA Intergenic Intergenic 48108 ENSMUSG00000026700.4 ENSMUSG00000026700 ENSMUST00000028024 Tnfsf4 protein_coding Interval_80457 chr18 42349392 42351024 + 0 NA Intergenic Intergenic -44867 ENSMUSG00000024497.4 ENSMUSG00000024497 ENSMUST00000237247 Pou4f3 protein_coding Interval_95409 chr2 108743462 108743666 + 0 NA Intergenic Intergenic -9362 ENSMUSG00000083697.1 ENSMUSG00000083697 ENSMUST00000118202 Gm13914 processed_pseudogene Interval_156034 chr8 43080629 43082271 + 0 NA Intergenic Intergenic -4137 ENSMUSG00000109627.1 ENSMUSG00000109627 ENSMUST00000209715 Gm45590 processed_pseudogene Interval_85751 chr19 30347019 30347401 + 0 NA Intergenic Intergenic 82330 ENSMUSG00000089016.1 ENSMUSG00000089016 ENSMUST00000158391 Gm24883 misc_RNA Interval_69068 chr16 90408697 90408978 + 0 NA intron (ENSMUSG00000053414.8, intron 1 of 10) protein_coding-intron (ENSMUSG00000053414.8, intron 1 of 10) 8293 ENSMUSG00000053414.8 ENSMUSG00000053414 ENSMUST00000231603 Hunk protein_coding Interval_136121 chr6 51210579 51210835 + 0 NA Intergenic Intergenic 59203 ENSMUSG00000065505.1 ENSMUSG00000065505 ENSMUST00000083571 Mir148a miRNA Interval_72689 chr17 31574588 31574966 + 0 NA intron (ENSMUSG00000006705.13, intron 1 of 10) protein_coding-intron (ENSMUSG00000006705.13, intron 1 of 10) 7614 ENSMUSG00000118239.1 ENSMUSG00000118239 ENSMUST00000236000 Gm50107 sense_intronic Interval_148960 chr7 90416641 90419653 + 0 NA Intergenic Intergenic -8430 ENSMUSG00000044362.8 ENSMUSG00000044362 ENSMUST00000061391 Ccdc89 protein_coding Interval_160926 chr8 115150744 115151416 + 0 NA intron (ENSMUSG00000004637.15, intron 2 of 2) protein_coding-intron (ENSMUSG00000004637.15, intron 8 of 8) -98167 ENSMUSG00000088428.1 ENSMUSG00000088428 ENSMUST00000157803 Gm22556 rRNA Interval_169064 chr9 91383763 91384489 + 0 NA exon (ENSMUSG00000036972.14, exon 2 of 3) protein_coding-exon (ENSMUSG00000036972.14, exon 2 of 3) -2724 ENSMUSG00000102803.1 ENSMUSG00000102803 ENSMUST00000195215 Gm37477 TEC Interval_46761 chr13 70013220 70013684 + 0 NA intron (ENSMUSG00000099639.6, intron 3 of 5) lincRNA-intron (ENSMUSG00000099639.6, intron 4 of 4) -5838 ENSMUSG00000113980.1 ENSMUSG00000113980 ENSMUST00000221449 Gm47655 processed_pseudogene Interval_82304 chr18 70520182 70521427 + 0 NA intron (ENSMUSG00000038425.18, intron 7 of 9) protein_coding-intron (ENSMUSG00000038425.18, intron 7 of 9) 4018 ENSMUSG00000098721.1 ENSMUSG00000098721 ENSMUST00000184246 Mir6357 miRNA Interval_146502 chr7 46471181 46471569 + 0 NA intron (ENSMUSG00000030839.12, intron 3 of 3) protein_coding-intron (ENSMUSG00000030839.12, intron 10 of 10) 20962 ENSMUSG00000094229.1 ENSMUSG00000094229 ENSMUST00000179018 Gm22969 snRNA Interval_106540 chr3 97101341 97101794 + 0 NA Intergenic Intergenic -8782 ENSMUSG00000104766.1 ENSMUSG00000104766 ENSMUST00000197696 4930573H18Rik antisense Interval_168918 chr9 88574773 88575326 + 0 NA Intergenic Intergenic -6098 ENSMUSG00000090693.4 ENSMUSG00000090693 ENSMUST00000216686 Trim43a protein_coding Interval_11598 chr1 183140504 183140759 + 0 NA intron (ENSMUSG00000030768.12, intron 2 of 2) protein_coding-intron (ENSMUSG00000030768.12, intron 3 of 9) 65785 ENSMUSG00000102478.1 ENSMUSG00000102478 ENSMUST00000195236 BC085271 transcribed_processed_pseudogene Interval_82530 chr18 74975606 74976518 + 0 NA intron (ENSMUSG00000118384.1, intron 3 of 6) lincRNA-intron (ENSMUSG00000118384.1, intron 3 of 6) 5485 ENSMUSG00000118384.1 ENSMUSG00000118384 ENSMUST00000237753 9030625G05Rik lincRNA Interval_174625 chrX 160390276 160391637 + 0 NA intron (ENSMUSG00000031298.15, intron 1 of 7) protein_coding-intron (ENSMUSG00000031298.15, intron 1 of 27) 228 ENSMUSG00000031298.15 ENSMUSG00000031298 ENSMUST00000112398 Adgrg2 protein_coding Interval_7266 chr1 128323517 128324939 + 0 NA intron (ENSMUSG00000026354.8, intron 1 of 16) protein_coding-intron (ENSMUSG00000026354.8, intron 1 of 16) 21814 ENSMUSG00000026355.11 ENSMUSG00000026355 ENSMUST00000188755 Mcm6 protein_coding Interval_23871 chr11 27353406 27354328 + 0 NA Intergenic Intergenic -34889 ENSMUSG00000088438.1 ENSMUSG00000088438 ENSMUST00000157813 Gm25387 snoRNA Interval_109709 chr3 146185167 146185386 + 0 NA intron (ENSMUSG00000011008.13, intron 11 of 13) protein_coding-intron (ENSMUSG00000011008.13, intron 11 of 13) -5089 ENSMUSG00000011008.13 ENSMUSG00000011008 ENSMUST00000169984 Mcoln2 protein_coding Interval_85003 chr19 21217913 21218182 + 0 NA intron (ENSMUSG00000118086.1, intron 1 of 5) lincRNA-intron (ENSMUSG00000118086.1, intron 1 of 5) 9570 ENSMUSG00000118090.1 ENSMUSG00000118090 ENSMUST00000236069 Gm50236 lincRNA Interval_166591 chr9 61147123 61147601 + 0 NA Intergenic Intergenic 8847 ENSMUSG00000110998.1 ENSMUSG00000110998 ENSMUST00000216012 I730028E13Rik lincRNA Interval_106116 chr3 93362017 93363052 + 0 NA intron (ENSMUSG00000102476.1, intron 3 of 3) lincRNA-intron (ENSMUSG00000102476.1, intron 3 of 3) -26155 ENSMUSG00000106242.1 ENSMUSG00000106242 ENSMUST00000200618 Gm44353 miRNA Interval_39294 chr12 86503957 86505031 + 0 NA promoter-TSS (ENSMUSG00000021255.17) protein_coding-promoter-TSS (ENSMUSG00000021255.17) 34377 ENSMUSG00000021255.17 ENSMUSG00000021255 ENSMUST00000136464 Esrrb protein_coding Interval_92865 chr2 67157805 67159516 + 0 NA intron (ENSMUSG00000086908.1, intron 2 of 2) lincRNA-intron (ENSMUSG00000086908.1, intron 2 of 2) 36075 ENSMUSG00000086908.1 ENSMUSG00000086908 ENSMUST00000147939 Gm13598 lincRNA Interval_85974 chr19 34483589 34483836 + 0 NA Intergenic Intergenic -8548 ENSMUSG00000050370.5 ENSMUSG00000050370 ENSMUST00000050562 Ch25h protein_coding Interval_76126 chr17 75233076 75233433 + 0 NA intron (ENSMUSG00000001870.16, intron 3 of 20) protein_coding-intron (ENSMUSG00000001870.16, intron 7 of 33) 68047 ENSMUSG00000084025.1 ENSMUSG00000084025 ENSMUST00000120159 Gm6276 processed_pseudogene Interval_98194 chr2 149724348 149724735 + 0 NA Intergenic Intergenic -18634 ENSMUSG00000081494.1 ENSMUSG00000081494 ENSMUST00000118417 Gm14130 processed_pseudogene Interval_26506 chr11 58210601 58211733 + 0 NA intron (ENSMUSG00000069874.7, intron 1 of 1) protein_coding-intron (ENSMUSG00000069874.7, intron 1 of 1) -3841 ENSMUSG00000069874.7 ENSMUSG00000069874 ENSMUST00000108836 Irgm2 protein_coding Interval_14855 chr10 40536075 40537544 + 0 NA Intergenic Intergenic -12083 ENSMUSG00000111251.1 ENSMUSG00000111251 ENSMUST00000214826 Gm18671 processed_pseudogene Interval_117181 chr4 120286898 120288303 + 0 NA promoter-TSS (ENSMUSG00000052135.8) protein_coding-promoter-TSS (ENSMUSG00000052135.8) -251 ENSMUSG00000052135.8 ENSMUSG00000052135 ENSMUST00000102656 Foxo6 protein_coding Interval_29819 chr11 87028280 87028567 + 0 NA Intergenic Intergenic -31160 ENSMUSG00000088816.1 ENSMUSG00000088816 ENSMUST00000158191 Gm22387 scaRNA Interval_53790 chr14 61787913 61789267 + 0 NA Intergenic Intergenic 105080 ENSMUSG00000104187.1 ENSMUSG00000104187 ENSMUST00000194021 Gm37820 TEC Interval_94457 chr2 91360691 91361962 + 0 NA intron (ENSMUSG00000040591.18, intron 3 of 3) protein_coding-intron (ENSMUSG00000040591.18, intron 3 of 8) -17137 ENSMUSG00000081248.1 ENSMUSG00000081248 ENSMUST00000120422 Gm13787 processed_pseudogene Interval_60547 chr15 74861190 74861437 + 0 NA Intergenic Intergenic -4995 ENSMUSG00000022589.8 ENSMUSG00000022589 ENSMUST00000167634 Cyp11b2 protein_coding Interval_66545 chr16 35013486 35014392 + 0 NA intron (ENSMUSG00000116840.1, intron 2 of 4) antisense-intron (ENSMUSG00000116840.1, intron 2 of 3) 8961 ENSMUSG00000116840.1 ENSMUSG00000116840 ENSMUST00000232358 Gm21691 antisense Interval_80200 chr18 38197236 38198314 + 0 NA exon (ENSMUSG00000051375.15, exon 3 of 3) protein_coding-exon (ENSMUSG00000051375.15, exon 3 of 3) 6065 ENSMUSG00000051375.15 ENSMUSG00000051375 ENSMUST00000193828 Pcdh1 protein_coding Interval_22124 chr11 6488772 6490413 + 0 NA intron (ENSMUSG00000086839.7, intron 2 of 2) antisense-intron (ENSMUSG00000086839.7, intron 1 of 2) -13675 ENSMUSG00000094483.2 ENSMUSG00000094483 ENSMUST00000179343 Purb protein_coding Interval_55064 chr14 77625980 77627271 + 0 NA intron (ENSMUSG00000022012.9, intron 9 of 13) protein_coding-intron (ENSMUSG00000022012.9, intron 13 of 18) 7235 ENSMUSG00000115363.1 ENSMUSG00000115363 ENSMUST00000227098 Gm49003 antisense Interval_56435 chr14 118736603 118737899 + 0 NA Intergenic Intergenic -2106 ENSMUSG00000098630.1 ENSMUSG00000098630 ENSMUST00000184172 Gm27198 lincRNA Interval_150665 chr7 113181296 113182373 + 0 NA Intergenic Intergenic -39819 ENSMUSG00000110009.1 ENSMUSG00000110009 ENSMUST00000210408 4930543E12Rik lincRNA Interval_63478 chr15 101329145 101329737 + 0 NA intron (ENSMUSG00000116114.1, intron 1 of 4) antisense-intron (ENSMUSG00000116114.1, intron 1 of 4) 13339 ENSMUSG00000116395.1 ENSMUSG00000116395 ENSMUST00000229927 Gm49499 TEC Interval_99695 chr2 164359947 164361416 + 0 NA intron (ENSMUSG00000017002.14, intron 1 of 2) protein_coding-intron (ENSMUSG00000017002.14, intron 1 of 2) -6298 ENSMUSG00000098489.1 ENSMUSG00000098489 ENSMUST00000185076 Mir7678 miRNA Interval_88743 chr2 10167565 10167827 + 0 NA intron (ENSMUSG00000025780.7, intron 2 of 13) protein_coding-intron (ENSMUSG00000025780.7, intron 2 of 13) 14125 ENSMUSG00000025780.7 ENSMUSG00000025780 ENSMUST00000026886 Itih5 protein_coding Interval_80175 chr18 38033813 38034012 + 0 NA intron (ENSMUSG00000118056.1, intron 2 of 3) lincRNA-intron (ENSMUSG00000118056.1, intron 2 of 3) 10383 ENSMUSG00000118056.1 ENSMUSG00000118056 ENSMUST00000236681 Gm30093 lincRNA Interval_161796 chr8 122853382 122854028 + 0 NA intron (ENSMUSG00000031962.6, intron 1 of 13) protein_coding-intron (ENSMUSG00000031962.6, intron 1 of 13) 5739 ENSMUSG00000031962.6 ENSMUSG00000031962 ENSMUST00000034443 Cdh15 protein_coding Interval_34871 chr12 12870933 12871953 + 0 NA intron (ENSMUSG00000113363.1, intron 4 of 4) lincRNA-intron (ENSMUSG00000113363.1, intron 4 of 4) 5873 ENSMUSG00000113363.1 ENSMUSG00000113363 ENSMUST00000221441 Gm48187 lincRNA Interval_107343 chr3 106010400 106010678 + 0 NA intron (ENSMUSG00000106093.1, intron 2 of 2) protein_coding-intron (ENSMUSG00000010136.14, intron 1 of 5) -1152 ENSMUSG00000104592.1 ENSMUSG00000104592 ENSMUST00000197165 Gm42721 sense_intronic Interval_64267 chr16 10054235 10054422 + 0 NA Intergenic Intergenic -8363 ENSMUSG00000098170.1 ENSMUSG00000098170 ENSMUST00000182416 Gm3890 processed_pseudogene Interval_126044 chr5 77068448 77068766 + 0 NA Intergenic Intergenic -25925 ENSMUSG00000087541.1 ENSMUSG00000087541 ENSMUST00000148568 Hopxos antisense Interval_13967 chr10 25167235 25167768 + 0 NA Intergenic Intergenic 53190 ENSMUSG00000039166.16 ENSMUSG00000039166 ENSMUST00000176231 Akap7 protein_coding Interval_74671 chr17 55840173 55840972 + 0 NA intron (ENSMUSG00000032915.6, intron 15 of 16) protein_coding-intron (ENSMUSG00000032915.6, intron 15 of 16) 10557 ENSMUSG00000093740.1 ENSMUSG00000093740 ENSMUST00000176564 Gm18417 unprocessed_pseudogene Interval_83145 chr18 82127319 82127638 + 0 NA Intergenic Intergenic 131032 ENSMUSG00000117913.1 ENSMUSG00000117913 ENSMUST00000237813 Gm50294 lincRNA Interval_168510 chr9 82863797 82864491 + 0 NA Intergenic Intergenic 34604 ENSMUSG00000032251.12 ENSMUSG00000032251 ENSMUST00000034783 Irak1bp1 protein_coding Interval_11966 chr1 187825721 187825973 + 0 NA intron (ENSMUSG00000026610.13, intron 3 of 3) protein_coding-intron (ENSMUSG00000026610.13, intron 2 of 7) 113042 ENSMUSG00000118492.1 ENSMUSG00000118492 ENSMUST00000238811 AC121143.1 processed_pseudogene Interval_18013 chr10 81357109 81358479 + 0 NA exon (ENSMUSG00000034854.8, exon 1 of 10) protein_coding-exon (ENSMUSG00000034854.8, exon 1 of 10) 242 ENSMUSG00000034854.8 ENSMUSG00000034854 ENSMUST00000132368 Mfsd12 protein_coding Interval_57437 chr15 10823526 10825198 + 0 NA intron (ENSMUSG00000115151.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000115151.1, intron 1 of 2) 9535 ENSMUSG00000115151.1 ENSMUSG00000115151 ENSMUST00000228418 Gm19276 lincRNA Interval_145740 chr7 37970263 37970478 + 0 NA promoter-TSS (ENSMUSG00000030421.9) protein_coding-promoter-TSS (ENSMUSG00000030421.9) 53181 ENSMUSG00000030421.9 ENSMUSG00000030421 ENSMUST00000206169 Uri1 protein_coding Interval_59385 chr15 52019824 52022281 + 0 NA Intergenic Intergenic 7768 ENSMUSG00000115068.1 ENSMUSG00000115068 ENSMUST00000228659 Gm48926 processed_pseudogene Interval_72157 chr17 28327882 28329910 + 0 NA promoter-TSS (ENSMUSG00000037805.15) protein_coding-promoter-TSS (ENSMUSG00000037805.15) 326 ENSMUSG00000037805.15 ENSMUSG00000037805 ENSMUST00000141049 Rpl10a protein_coding Interval_169773 chr9 101140329 101140525 + 0 NA intron (ENSMUSG00000043154.15, intron 9 of 11) protein_coding-intron (ENSMUSG00000043154.15, intron 9 of 12) -9885 ENSMUSG00000104061.1 ENSMUSG00000104061 ENSMUST00000195293 Gm37953 TEC Interval_9510 chr1 158247476 158247807 + 0 NA intron (ENSMUSG00000004031.13, intron 7 of 7) protein_coding-intron (ENSMUSG00000004031.13, intron 7 of 7) 108588 ENSMUSG00000004031.13 ENSMUSG00000004031 ENSMUST00000192709 Brinp2 protein_coding Interval_116497 chr4 114691389 114691629 + 0 NA Intergenic Intergenic 10705 ENSMUSG00000085870.1 ENSMUSG00000085870 ENSMUST00000146346 Gm12829 lincRNA Interval_99332 chr2 159107334 159107829 + 0 NA Intergenic Intergenic -31780 ENSMUSG00000077188.1 ENSMUSG00000077188 ENSMUST00000104000 Gm25090 snoRNA Interval_151811 chr7 126807594 126809704 + 0 NA intron (ENSMUSG00000114515.2, intron 1 of 3) protein_coding-intron (ENSMUSG00000114515.2, intron 1 of 3) 459 ENSMUSG00000114515.2 ENSMUSG00000114515 ENSMUST00000207534 Aldoa protein_coding Interval_63613 chr15 102350057 102351134 + 0 NA promoter-TSS (ENSMUSG00000036678.8) protein_coding-promoter-TSS (ENSMUSG00000036678.8) -232 ENSMUSG00000116402.1 ENSMUSG00000116402 ENSMUST00000229977 Gm36246 bidirectional_promoter_lncRNA Interval_116016 chr4 107016400 107016635 + 0 NA intron (ENSMUSG00000061887.14, intron 5 of 10) protein_coding-intron (ENSMUSG00000061887.14, intron 5 of 17) 5982 ENSMUSG00000085581.1 ENSMUSG00000085581 ENSMUST00000129617 Gm12786 antisense Interval_146342 chr7 45425431 45425729 + 0 NA intron (ENSMUSG00000003868.14, intron 4 of 5) protein_coding-intron (ENSMUSG00000003868.14, intron 6 of 14) 4760 ENSMUSG00000100916.3 ENSMUSG00000100916 ENSMUST00000072453 Lhb protein_coding Interval_48850 chr13 104036659 104037152 + 0 NA promoter-TSS (ENSMUSG00000021710.11) protein_coding-promoter-TSS (ENSMUSG00000021710.11) -2332 ENSMUSG00000021710.11 ENSMUSG00000021710 ENSMUST00000224086 Nln protein_coding Interval_158541 chr8 84345801 84346175 + 0 NA intron (ENSMUSG00000034656.18, intron 1 of 48) protein_coding-intron (ENSMUSG00000034656.18, intron 1 of 48) 7349 ENSMUSG00000034656.18 ENSMUSG00000034656 ENSMUST00000130507 Cacna1a protein_coding Interval_147617 chr7 70146009 70146338 + 0 NA Intergenic Intergenic -61262 ENSMUSG00000109280.1 ENSMUSG00000109280 ENSMUST00000208979 Gm35325 lincRNA Interval_74086 chr17 46510824 46511563 + 0 NA intron (ENSMUSG00000040327.16, intron 5 of 17) protein_coding-intron (ENSMUSG00000040327.16, intron 28 of 41) -10122 ENSMUSG00000040327.16 ENSMUSG00000040327 ENSMUST00000183163 Cul9 protein_coding Interval_27362 chr11 66981529 66981867 + 0 NA Intergenic Intergenic -20388 ENSMUSG00000085926.1 ENSMUSG00000085926 ENSMUST00000138819 Gm12299 processed_transcript Interval_31145 chr11 98421474 98421706 + 0 NA intron (ENSMUSG00000062312.5, intron 3 of 25) protein_coding-intron (ENSMUSG00000062312.5, intron 3 of 26) 1790 ENSMUSG00000089223.1 ENSMUSG00000089223 ENSMUST00000158598 Gm25048 snRNA Interval_129374 chr5 119608788 119609001 + 0 NA intron (ENSMUSG00000087516.7, intron 1 of 5) antisense-intron (ENSMUSG00000087516.7, intron 1 of 5) -10690 ENSMUSG00000106991.1 ENSMUSG00000106991 ENSMUST00000202546 Gm43399 TEC Interval_51959 chr14 34267922 34269047 + 0 NA TTS (ENSMUSG00000041471.9) protein_coding-TTS (ENSMUSG00000041471.9) 5361 ENSMUSG00000115183.1 ENSMUSG00000115183 ENSMUST00000228310 Gm49203 processed_pseudogene Interval_111838 chr4 31786451 31786703 + 0 NA Intergenic Intergenic -199090 ENSMUSG00000028284.13 ENSMUSG00000028284 ENSMUST00000131310 Map3k7 protein_coding Interval_3905 chr1 64673934 64674154 + 0 NA Intergenic Intergenic 16584 ENSMUSG00000087213.2 ENSMUSG00000087213 ENSMUST00000186325 2810408I11Rik processed_transcript Interval_108264 chr3 123116013 123117231 + 0 NA intron (ENSMUSG00000050315.14, intron 3 of 3) protein_coding-intron (ENSMUSG00000050315.14, intron 1 of 1) -25666 ENSMUSG00000106012.1 ENSMUSG00000106012 ENSMUST00000196387 Gm43744 processed_pseudogene Interval_168022 chr9 75440959 75442080 + 0 NA promoter-TSS (ENSMUSG00000042487.6) protein_coding-promoter-TSS (ENSMUSG00000042487.6) -5 ENSMUSG00000042487.6 ENSMUSG00000042487 ENSMUST00000213248 Leo1 protein_coding Interval_17908 chr10 80751258 80752554 + 0 NA Intergenic Intergenic 17081 ENSMUSG00000075558.3 ENSMUSG00000075558 ENSMUST00000105760 Gm17151 antisense Interval_122249 chr5 20658211 20658476 + 0 NA intron (ENSMUSG00000040003.18, intron 20 of 20) protein_coding-intron (ENSMUSG00000040003.18, intron 21 of 22) -43934 ENSMUSG00000073174.6 ENSMUSG00000073174 ENSMUST00000189302 Gm29254 3prime_overlapping_ncRNA Interval_141319 chr6 127165893 127166823 + 0 NA intron (ENSMUSG00000097166.1, intron 1 of 1) antisense-intron (ENSMUSG00000097166.1, intron 1 of 1) -1217 ENSMUSG00000107378.1 ENSMUSG00000107378 ENSMUST00000202981 Gm18995 processed_pseudogene Interval_28811 chr11 78472901 78473130 + 0 NA TTS (ENSMUSG00000050132.13) protein_coding-TTS (ENSMUSG00000050132.13) 2789 ENSMUSG00000020829.9 ENSMUSG00000020829 ENSMUST00000180786 Slc46a1 protein_coding Interval_153242 chr7 142737104 142737988 + 0 NA intron (ENSMUSG00000000215.11, intron 1 of 4) protein_coding-intron (ENSMUSG00000000215.11, intron 1 of 4) 5835 ENSMUSG00000000215.11 ENSMUSG00000000215 ENSMUST00000162317 Ins2 protein_coding Interval_61636 chr15 83076009 83077183 + 0 NA Intergenic Intergenic -23667 ENSMUSG00000058586.12 ENSMUSG00000058586 ENSMUST00000169461 Serhl protein_coding Interval_129844 chr5 122707112 122709117 + 0 NA exon (ENSMUSG00000029470.15, exon 1 of 1) protein_coding-exon (ENSMUSG00000029470.15, exon 1 of 1) 534 ENSMUSG00000029470.15 ENSMUSG00000029470 ENSMUST00000139712 P2rx4 protein_coding Interval_15598 chr10 52232263 52234436 + 0 NA promoter-TSS (ENSMUSG00000019891.15) protein_coding-promoter-TSS (ENSMUSG00000019891.15) -288 ENSMUSG00000019891.15 ENSMUSG00000019891 ENSMUST00000218582 Dcbld1 protein_coding Interval_58618 chr15 36598691 36599114 + 0 NA promoter-TSS (ENSMUSG00000022283.15) protein_coding-promoter-TSS (ENSMUSG00000022283.15) 6564 ENSMUSG00000022283.15 ENSMUSG00000022283 ENSMUST00000226496 Pabpc1 protein_coding Interval_167285 chr9 67034858 67035144 + 0 NA intron (ENSMUSG00000032366.15, intron 1 of 6) protein_coding-intron (ENSMUSG00000032366.15, intron 3 of 8) -2176 ENSMUSG00000032366.15 ENSMUSG00000032366 ENSMUST00000131279 Tpm1 protein_coding Interval_134807 chr6 31692538 31693498 + 0 NA intron (ENSMUSG00000086804.8, intron 4 of 6) lincRNA-intron (ENSMUSG00000086804.8, intron 2 of 2) 13972 ENSMUSG00000107010.1 ENSMUSG00000107010 ENSMUST00000202780 Gm43293 lincRNA Interval_72808 chr17 32283466 32285116 + 0 NA promoter-TSS (ENSMUSG00000024002.18) protein_coding-promoter-TSS (ENSMUSG00000024002.18) -158 ENSMUSG00000024002.18 ENSMUSG00000024002 ENSMUST00000230982 Brd4 protein_coding Interval_172826 chrX 50622896 50623699 + 0 NA intron (ENSMUSG00000085396.7, intron 4 of 5) processed_transcript-intron (ENSMUSG00000085396.7, intron 3 of 6) -58414 ENSMUSG00000085396.7 ENSMUSG00000085396 ENSMUST00000148530 Firre processed_transcript Interval_170800 chr9 110855052 110855264 + 0 NA intron (ENSMUSG00000049719.14, intron 4 of 4) protein_coding-intron (ENSMUSG00000049719.14, intron 3 of 3) -6208 ENSMUSG00000048752.7 ENSMUSG00000048752 ENSMUST00000196027 Prss50 protein_coding Interval_136193 chr6 51933187 51933534 + 0 NA promoter-TSS (ENSMUSG00000059182.7) protein_coding-promoter-TSS (ENSMUSG00000059182.7) -61431 ENSMUSG00000059182.7 ENSMUSG00000059182 ENSMUST00000203313 Skap2 protein_coding Interval_67016 chr16 40463511 40463912 + 0 NA intron (ENSMUSG00000061080.11, intron 2 of 2) protein_coding-intron (ENSMUSG00000061080.11, intron 1 of 8) -95774 ENSMUSG00000098472.1 ENSMUSG00000098472 ENSMUST00000184367 Gm27887 miRNA Interval_161184 chr8 118295852 118296115 + 0 NA intron (ENSMUSG00000031841.19, intron 1 of 7) protein_coding-intron (ENSMUSG00000031841.19, intron 1 of 13) 86208 ENSMUSG00000110662.1 ENSMUSG00000110662 ENSMUST00000213075 Gm45722 processed_pseudogene Interval_43335 chr13 29340815 29341721 + 0 NA intron (ENSMUSG00000006191.17, intron 15 of 15) protein_coding-intron (ENSMUSG00000006191.17, intron 15 of 15) -104648 ENSMUSG00000086423.1 ENSMUSG00000086423 ENSMUST00000137593 Gm11364 sense_intronic Interval_139628 chr6 103810224 103811334 + 0 NA Intergenic Intergenic 21799 ENSMUSG00000089091.1 ENSMUSG00000089091 ENSMUST00000158466 Gm25656 snRNA Interval_162515 chr9 3523802 3524735 + 0 NA Intergenic Intergenic -8620 ENSMUSG00000041624.10 ENSMUSG00000041624 ENSMUST00000212705 Gucy1a2 protein_coding Interval_67442 chr16 48656184 48656454 + 0 NA Intergenic Intergenic 94129 ENSMUSG00000116640.1 ENSMUSG00000116640 ENSMUST00000231404 Gm8670 processed_pseudogene Interval_45969 chr13 59704524 59704824 + 0 NA TTS (ENSMUSG00000050876.9) protein_coding-TTS (ENSMUSG00000050876.9) 1507 ENSMUSG00000050876.9 ENSMUSG00000050876 ENSMUST00000225362 Spata31d1a protein_coding Interval_43814 chr13 36924497 36924706 + 0 NA intron (ENSMUSG00000039109.16, intron 8 of 14) protein_coding-intron (ENSMUSG00000039109.16, intron 8 of 14) -38638 ENSMUSG00000114329.1 ENSMUSG00000114329 ENSMUST00000224527 Gm30489 antisense Interval_172961 chrX 57951419 57951727 + 0 NA Intergenic Intergenic -37900 ENSMUSG00000093905.1 ENSMUSG00000093905 ENSMUST00000082977 Gm25023 snRNA Interval_62299 chr15 89556341 89559528 + 0 NA TTS (ENSMUSG00000022623.17) protein_coding-TTS (ENSMUSG00000022623.17) 1232 ENSMUSG00000022623.17 ENSMUSG00000022623 ENSMUST00000238458 Shank3 protein_coding Interval_53551 chr14 59025662 59026506 + 0 NA Intergenic Intergenic 19856 ENSMUSG00000114441.1 ENSMUSG00000114441 ENSMUST00000224109 Gm33472 lincRNA Interval_25222 chr11 45549257 45549472 + 0 NA Intergenic Intergenic -90019 ENSMUSG00000077320.1 ENSMUSG00000077320 ENSMUST00000104132 Gm22284 snoRNA Interval_35434 chr12 21724029 21724258 + 0 NA Intergenic Intergenic 52564 ENSMUSG00000091105.1 ENSMUSG00000091105 ENSMUST00000164169 Mrto4-ps2 processed_pseudogene Interval_8434 chr1 139276583 139277061 + 0 NA intron (ENSMUSG00000063681.14, intron 2 of 3) protein_coding-intron (ENSMUSG00000063681.14, intron 5 of 11) 51426 ENSMUSG00000063681.14 ENSMUSG00000063681 ENSMUST00000197035 Crb1 protein_coding Interval_141601 chr6 130683893 130684337 + 0 NA intron (ENSMUSG00000107898.1, intron 2 of 2) unprocessed_pseudogene-intron (ENSMUSG00000107898.1, intron 2 of 2) 13866 ENSMUSG00000107898.1 ENSMUSG00000107898 ENSMUST00000205067 Gm27013 unprocessed_pseudogene Interval_72423 chr17 29728055 29728684 + 0 NA Intergenic Intergenic 11297 ENSMUSG00000117434.1 ENSMUSG00000117434 ENSMUST00000234637 1810014P07Rik bidirectional_promoter_lncRNA Interval_108360 chr3 125631991 125632523 + 0 NA intron (ENSMUSG00000027971.16, intron 6 of 13) protein_coding-intron (ENSMUSG00000027971.16, intron 6 of 6) -77829 ENSMUSG00000027971.16 ENSMUSG00000027971 ENSMUST00000198101 Ndst4 protein_coding Interval_53350 chr14 56530886 56531687 + 0 NA intron (ENSMUSG00000064128.8, intron 14 of 17) protein_coding-intron (ENSMUSG00000064128.8, intron 13 of 16) -4685 ENSMUSG00000089170.1 ENSMUSG00000089170 ENSMUST00000158545 Gm22431 misc_RNA Interval_41968 chr13 5728796 5729852 + 0 NA Intergenic Intergenic 92534 ENSMUSG00000080562.2 ENSMUSG00000080562 ENSMUST00000116912 Gm26043 miRNA Interval_156832 chr8 60935443 60935695 + 0 NA exon (ENSMUSG00000004319.15, exon 5 of 5) protein_coding-exon (ENSMUSG00000004319.15, exon 5 of 5) 29538 ENSMUSG00000038005.15 ENSMUSG00000038005 ENSMUST00000211016 Hpf1 protein_coding Interval_46469 chr13 66409472 66410256 + 0 NA intron (ENSMUSG00000114616.1, intron 2 of 2) lincRNA-intron (ENSMUSG00000114616.1, intron 2 of 2) -2618 ENSMUSG00000114261.1 ENSMUSG00000114261 ENSMUST00000224573 Gm48243 processed_pseudogene Interval_132397 chr5 144696658 144697237 + 0 NA Intergenic Intergenic 26850 ENSMUSG00000082524.3 ENSMUSG00000082524 ENSMUST00000121256 Gm6272 processed_pseudogene Interval_70976 chr17 16960317 16960593 + 0 NA intron (ENSMUSG00000060149.7, intron 1 of 2) lincRNA-intron (ENSMUSG00000060149.7, intron 1 of 2) 8903 ENSMUSG00000060149.7 ENSMUSG00000060149 ENSMUST00000071374 BC002059 lincRNA Interval_90576 chr2 31221338 31221606 + 0 NA Intergenic Intergenic -10125 ENSMUSG00000087430.1 ENSMUSG00000087430 ENSMUST00000146769 Gm13405 antisense Interval_21141 chr10 126844339 126845723 + 0 NA Intergenic Intergenic -4530 ENSMUSG00000089550.1 ENSMUSG00000089550 ENSMUST00000158925 Gm24179 snoRNA Interval_165451 chr9 48222754 48223445 + 0 NA intron (ENSMUSG00000044229.9, intron 1 of 10) protein_coding-intron (ENSMUSG00000044229.9, intron 1 of 10) -64134 ENSMUSG00000110924.1 ENSMUSG00000110924 ENSMUST00000214538 Gm40518 lincRNA Interval_154929 chr8 25122386 25122572 + 0 NA Intergenic Intergenic -17811 ENSMUSG00000109684.1 ENSMUSG00000109684 ENSMUST00000211447 Gm45745 TEC Interval_124113 chr5 38435482 38437149 + 0 NA intron (ENSMUSG00000005107.13, intron 7 of 13) protein_coding-intron (ENSMUSG00000005107.13, intron 6 of 10) 43867 ENSMUSG00000005107.13 ENSMUSG00000005107 ENSMUST00000156076 Slc2a9 protein_coding Interval_97337 chr2 134785607 134787017 + 0 NA promoter-TSS (ENSMUSG00000051177.16) protein_coding-promoter-TSS (ENSMUSG00000051177.16) 83 ENSMUSG00000051177.16 ENSMUSG00000051177 ENSMUST00000201524 Plcb1 protein_coding Interval_164815 chr9 42156566 42157055 + 0 NA Intergenic Intergenic 14449 ENSMUSG00000111167.1 ENSMUSG00000111167 ENSMUST00000217090 Gm39321 lincRNA Interval_107499 chr3 108137679 108138855 + 0 NA intron (ENSMUSG00000000001.4, intron 1 of 8) protein_coding-intron (ENSMUSG00000000001.4, intron 1 of 8) 7879 ENSMUSG00000000001.4 ENSMUSG00000000001 ENSMUST00000000001 Gnai3 protein_coding Interval_156437 chr8 48202598 48203811 + 0 NA Intergenic Intergenic 67781 ENSMUSG00000110480.1 ENSMUSG00000110480 ENSMUST00000212653 Gm32842 processed_pseudogene Interval_18604 chr10 88378748 88380307 + 0 NA promoter-TSS (ENSMUSG00000020057.2) protein_coding-promoter-TSS (ENSMUSG00000020057.2) -22531 ENSMUSG00000020057.2 ENSMUSG00000020057 ENSMUST00000138159 Dram1 protein_coding Interval_104436 chr3 65648518 65649785 + 0 NA Intergenic Intergenic -10137 ENSMUSG00000098944.1 ENSMUSG00000098944 ENSMUST00000185035 Mir8120 miRNA Interval_56321 chr14 117342887 117343462 + 0 NA intron (ENSMUSG00000058571.11, intron 2 of 9) protein_coding-intron (ENSMUSG00000058571.11, intron 2 of 8) 417643 ENSMUSG00000058571.11 ENSMUSG00000058571 ENSMUST00000078849 Gpc6 protein_coding Interval_18458 chr10 86295914 86296479 + 0 NA intron (ENSMUSG00000059602.14, intron 6 of 6) protein_coding-intron (ENSMUSG00000059602.14, intron 6 of 13) -4358 ENSMUSG00000020044.13 ENSMUSG00000020044 ENSMUST00000132307 Timp3 protein_coding Interval_44816 chr13 48869772 48871938 + 0 NA promoter-TSS (ENSMUSG00000086889.1) antisense-promoter-TSS (ENSMUSG00000086889.1) -257 ENSMUSG00000086889.1 ENSMUSG00000086889 ENSMUST00000123212 Phf2os1 antisense Interval_145735 chr7 37933667 37935133 + 0 NA Intergenic Intergenic 89151 ENSMUSG00000030421.9 ENSMUSG00000030421 ENSMUST00000206169 Uri1 protein_coding Interval_126313 chr5 86450191 86450687 + 0 NA intron (ENSMUSG00000072845.3, intron 1 of 8) protein_coding-intron (ENSMUSG00000072845.3, intron 1 of 8) -32094 ENSMUSG00000072845.3 ENSMUSG00000072845 ENSMUST00000198504 Tmprss11a protein_coding Interval_125176 chr5 65101756 65102689 + 0 NA Intergenic Intergenic -10090 ENSMUSG00000037913.12 ENSMUSG00000037913 ENSMUST00000203117 Tmem156 protein_coding Interval_62707 chr15 96382066 96382840 + 0 NA intron (ENSMUSG00000033237.19, intron 1 of 4) protein_coding-intron (ENSMUSG00000033237.19, intron 16 of 20) 3639 ENSMUSG00000033237.19 ENSMUSG00000033237 ENSMUST00000176739 Arid2 protein_coding Interval_118463 chr4 131818572 131820078 + 0 NA intron (ENSMUSG00000028909.17, intron 6 of 25) protein_coding-intron (ENSMUSG00000028909.17, intron 6 of 30) -20955 ENSMUSG00000028909.17 ENSMUSG00000028909 ENSMUST00000139641 Ptpru protein_coding Interval_102140 chr3 18522561 18523396 + 0 NA Intergenic Intergenic -10897 ENSMUSG00000040217.7 ENSMUSG00000040217 ENSMUST00000069626 Gm6369 processed_pseudogene Interval_22390 chr11 9416151 9417287 + 0 NA intron (ENSMUSG00000004668.14, intron 35 of 61) protein_coding-intron (ENSMUSG00000004668.14, intron 35 of 61) 223268 ENSMUSG00000004668.14 ENSMUSG00000004668 ENSMUST00000151522 Abca13 protein_coding Interval_80023 chr18 36695390 36696342 + 0 NA promoter-TSS (ENSMUSG00000044719.5) protein_coding-promoter-TSS (ENSMUSG00000044719.5) -2293 ENSMUSG00000044719.5 ENSMUSG00000044719 ENSMUST00000235134 E230025N22Rik protein_coding Interval_79583 chr18 33873287 33873841 + 0 NA intron (ENSMUSG00000024376.7, intron 10 of 23) protein_coding-intron (ENSMUSG00000024376.7, intron 10 of 23) 78400 ENSMUSG00000092819.1 ENSMUSG00000092819 ENSMUST00000175078 Gm23639 snoRNA Interval_26327 chr11 56246925 56247604 + 0 NA Intergenic Intergenic 15819 ENSMUSG00000084169.1 ENSMUSG00000084169 ENSMUST00000120178 Gm12240 processed_pseudogene Interval_37256 chr12 63184751 63184974 + 0 NA Intergenic Intergenic 14681 ENSMUSG00000113393.1 ENSMUSG00000113393 ENSMUST00000221219 Gm48415 processed_pseudogene Interval_138051 chr6 84711241 84711521 + 0 NA intron (ENSMUSG00000033769.16, intron 20 of 21) protein_coding-intron (ENSMUSG00000033769.16, intron 20 of 21) -100859 ENSMUSG00000098142.1 ENSMUSG00000098142 ENSMUST00000183053 Gm7507 processed_pseudogene Interval_27035 chr11 62482862 62483079 + 0 NA exon (ENSMUSG00000086310.1, exon 1 of 2) antisense-exon (ENSMUSG00000086310.1, exon 1 of 2) 173 ENSMUSG00000086310.1 ENSMUSG00000086310 ENSMUST00000153718 Gm12278 antisense Interval_27653 chr11 69311727 69311995 + 0 NA intron (ENSMUSG00000032782.19, intron 1 of 2) protein_coding-intron (ENSMUSG00000032782.19, intron 9 of 18) 7606 ENSMUSG00000032782.19 ENSMUSG00000032782 ENSMUST00000176111 Cntrob protein_coding Interval_171969 chr9 123044833 123045496 + 0 NA TTS (ENSMUSG00000111789.1) processed_transcript-TTS (ENSMUSG00000111789.1) 10438 ENSMUSG00000025787.6 ENSMUSG00000025787 ENSMUST00000214552 Tgm4 protein_coding Interval_57308 chr15 8659474 8660289 + 0 NA intron (ENSMUSG00000005360.14, intron 3 of 9) protein_coding-intron (ENSMUSG00000005360.14, intron 3 of 9) -4808 ENSMUSG00000103047.1 ENSMUSG00000103047 ENSMUST00000195237 Gm37310 TEC Interval_48645 chr13 100814812 100815659 + 0 NA promoter-TSS (ENSMUSG00000021629.10) protein_coding-promoter-TSS (ENSMUSG00000021629.10) 18105 ENSMUSG00000021629.10 ENSMUSG00000021629 ENSMUST00000224177 Slc30a5 protein_coding Interval_132796 chr5 147928222 147930078 + 0 NA Intergenic Intergenic 28016 ENSMUSG00000085565.1 ENSMUSG00000085565 ENSMUST00000138406 Gm15721 lincRNA Interval_97908 chr2 145588053 145588898 + 0 NA intron (ENSMUSG00000063873.10, intron 7 of 16) protein_coding-intron (ENSMUSG00000063873.10, intron 6 of 15) -33493 ENSMUSG00000074753.5 ENSMUSG00000074753 ENSMUST00000136794 Gm14092 antisense Interval_53430 chr14 57386961 57387901 + 0 NA intron (ENSMUSG00000021947.11, intron 1 of 3) protein_coding-intron (ENSMUSG00000021947.11, intron 1 of 7) -2181 ENSMUSG00000114952.1 ENSMUSG00000114952 ENSMUST00000225457 Gm29717 processed_pseudogene Interval_59764 chr15 59104058 59104665 + 0 NA Intergenic Intergenic -22356 ENSMUSG00000022353.10 ENSMUSG00000022353 ENSMUST00000227797 Mtss1 protein_coding Interval_28296 chr11 74981218 74982366 + 0 NA intron (ENSMUSG00000038290.15, intron 7 of 16) protein_coding-intron (ENSMUSG00000038290.15, intron 8 of 18) 11702 ENSMUSG00000101295.1 ENSMUSG00000101295 ENSMUST00000189608 Gm28180 antisense Interval_47040 chr13 74616762 74618051 + 0 NA promoter-TSS (ENSMUSG00000113204.1) lincRNA-promoter-TSS (ENSMUSG00000113204.1) -7372 ENSMUSG00000113204.1 ENSMUSG00000113204 ENSMUST00000222064 Gm46430 lincRNA Interval_33583 chr11 117358150 117360999 + 0 NA intron (ENSMUSG00000059248.13, intron 8 of 8) protein_coding-intron (ENSMUSG00000059248.13, intron 10 of 10) 27146 ENSMUSG00000059248.13 ENSMUSG00000059248 ENSMUST00000129387 Septin9 protein_coding Interval_29613 chr11 85426979 85427840 + 0 NA intron (ENSMUSG00000059439.15, intron 7 of 26) protein_coding-intron (ENSMUSG00000059439.15, intron 7 of 24) -38750 ENSMUSG00000059439.15 ENSMUSG00000059439 ENSMUST00000140562 Bcas3 protein_coding Interval_107984 chr3 118827144 118827367 + 0 NA intron (ENSMUSG00000033308.16, intron 1 of 2) protein_coding-intron (ENSMUSG00000033308.16, intron 8 of 22) -40989 ENSMUSG00000106542.1 ENSMUSG00000106542 ENSMUST00000197510 Gm43410 TEC Interval_114311 chr4 72180334 72181208 + 0 NA intron (ENSMUSG00000008305.18, intron 3 of 5) protein_coding-intron (ENSMUSG00000008305.18, intron 4 of 19) 12003 ENSMUSG00000086027.1 ENSMUSG00000086027 ENSMUST00000142137 Gm11250 antisense Interval_92951 chr2 68916742 68916978 + 0 NA intron (ENSMUSG00000027035.10, intron 1 of 10) protein_coding-intron (ENSMUSG00000027035.10, intron 1 of 9) 10857 ENSMUSG00000103747.1 ENSMUSG00000103747 ENSMUST00000192661 Gm38236 TEC Interval_36677 chr12 51970809 51971681 + 0 NA promoter-TSS (ENSMUSG00000035181.6) protein_coding-promoter-TSS (ENSMUSG00000035181.6) -23791 ENSMUSG00000112064.1 ENSMUSG00000112064 ENSMUST00000218223 Gm47399 processed_pseudogene Interval_33184 chr11 115070774 115072186 + 0 NA Intergenic Intergenic -9303 ENSMUSG00000048498.7 ENSMUSG00000048498 ENSMUST00000062787 Cd300e protein_coding Interval_168887 chr9 88388685 88389603 + 0 NA intron (ENSMUSG00000032422.18, intron 18 of 27) protein_coding-intron (ENSMUSG00000032422.18, intron 18 of 24) -1693 ENSMUSG00000066443.5 ENSMUSG00000066443 ENSMUST00000155008 Gm10163 processed_pseudogene Interval_69195 chr16 91255423 91257360 + 0 NA Intergenic Intergenic -6107 ENSMUSG00000102958.1 ENSMUSG00000102958 ENSMUST00000195507 Gm37016 TEC Interval_52445 chr14 46445025 46445305 + 0 NA intron (ENSMUSG00000086168.1, intron 2 of 2) lincRNA-intron (ENSMUSG00000086168.1, intron 2 of 2) 8310 ENSMUSG00000086168.1 ENSMUSG00000086168 ENSMUST00000144439 Gm15221 lincRNA Interval_153495 chr7 145205551 145207303 + 0 NA TTS (ENSMUSG00000109305.1) protein_coding-TTS (ENSMUSG00000109305.1) 1653 ENSMUSG00000109305.1 ENSMUSG00000109305 ENSMUST00000207841 Smim38 protein_coding Interval_11570 chr1 182795777 182796631 + 0 NA intron (ENSMUSG00000038576.15, intron 2 of 2) protein_coding-intron (ENSMUSG00000038576.15, intron 1 of 7) 31648 ENSMUSG00000038576.15 ENSMUSG00000038576 ENSMUST00000085724 Susd4 protein_coding Interval_174025 chrX 130276112 130276442 + 0 NA intron (ENSMUSG00000034480.18, intron 24 of 26) protein_coding-intron (ENSMUSG00000034480.18, intron 24 of 26) 125942 ENSMUSG00000084047.1 ENSMUSG00000084047 ENSMUST00000120343 Gm14984 processed_pseudogene Interval_66513 chr16 34659693 34659974 + 0 NA intron (ENSMUSG00000022832.11, intron 1 of 5) protein_coding-intron (ENSMUSG00000022832.11, intron 1 of 5) -6484 ENSMUSG00000022832.11 ENSMUSG00000022832 ENSMUST00000231612 Ropn1 protein_coding Interval_118782 chr4 133675663 133676056 + 0 NA Intergenic Intergenic -3212 ENSMUSG00000043257.15 ENSMUSG00000043257 ENSMUST00000151837 Pigv protein_coding Interval_84459 chr19 11183489 11184478 + 0 NA intron (ENSMUSG00000057240.14, intron 4 of 6) protein_coding-intron (ENSMUSG00000057240.14, intron 4 of 7) 12754 ENSMUSG00000057240.14 ENSMUSG00000057240 ENSMUST00000188464 Ms4a13 protein_coding Interval_69254 chr16 91704801 91705137 + 0 NA intron (ENSMUSG00000058240.14, intron 4 of 6) protein_coding-intron (ENSMUSG00000058240.14, intron 6 of 12) 16071 ENSMUSG00000085169.2 ENSMUSG00000085169 ENSMUST00000156242 Gm10785 antisense Interval_138458 chr6 88388205 88389032 + 0 NA intron (ENSMUSG00000033216.9, intron 1 of 5) protein_coding-intron (ENSMUSG00000033216.9, intron 1 of 6) -17359 ENSMUSG00000084582.1 ENSMUSG00000084582 ENSMUST00000122633 Gm25178 misc_RNA Interval_127565 chr5 105388841 105389177 + 0 NA Intergenic Intergenic -12236 ENSMUSG00000097237.1 ENSMUSG00000097237 ENSMUST00000181193 Gm26519 lincRNA Interval_7651 chr1 132820731 132821425 + 0 NA Intergenic Intergenic -6730 ENSMUSG00000088911.1 ENSMUSG00000088911 ENSMUST00000158286 Gm22609 snoRNA Interval_22335 chr11 8889502 8889689 + 0 NA intron (ENSMUSG00000046634.12, intron 16 of 42) protein_coding-intron (ENSMUSG00000046634.12, intron 23 of 49) -4299 ENSMUSG00000082095.1 ENSMUSG00000082095 ENSMUST00000119652 Gm11991 processed_pseudogene Interval_48291 chr13 97820167 97821219 + 0 NA intron (ENSMUSG00000114348.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000114348.1, intron 1 of 2) 5192 ENSMUSG00000114348.1 ENSMUSG00000114348 ENSMUST00000224296 Gm41031 lincRNA Interval_11405 chr1 181739867 181740993 + 0 NA promoter-TSS (ENSMUSG00000047369.17) protein_coding-promoter-TSS (ENSMUSG00000047369.17) -50188 ENSMUSG00000103100.1 ENSMUSG00000103100 ENSMUST00000194607 Gm37664 TEC Interval_89407 chr2 20516569 20517114 + 0 NA intron (ENSMUSG00000036617.17, intron 1 of 5) protein_coding-intron (ENSMUSG00000036617.17, intron 1 of 18) 6794 ENSMUSG00000036617.17 ENSMUSG00000036617 ENSMUST00000156587 Etl4 protein_coding Interval_86213 chr19 37837099 37837492 + 0 NA Intergenic Intergenic -32975 ENSMUSG00000118115.1 ENSMUSG00000118115 ENSMUST00000237198 Gm4757 processed_pseudogene Interval_154571 chr8 20904886 20905768 + 0 NA Intergenic Intergenic -3354 ENSMUSG00000082976.10 ENSMUSG00000082976 ENSMUST00000122025 Gm15056 protein_coding Interval_90308 chr2 29700563 29701155 + 0 NA intron (ENSMUSG00000039844.20, intron 9 of 23) protein_coding-intron (ENSMUSG00000039844.20, intron 8 of 25) 37806 ENSMUSG00000048316.3 ENSMUSG00000048316 ENSMUST00000051212 Gm9823 pseudogene Interval_7614 chr1 132513417 132514372 + 0 NA exon (ENSMUSG00000053024.14, exon 23 of 23) protein_coding-exon (ENSMUSG00000053024.14, exon 23 of 23) 7005 ENSMUSG00000048174.2 ENSMUSG00000048174 ENSMUST00000188789 Tmem81 protein_coding Interval_27210 chr11 64122884 64123254 + 0 NA Intergenic Intergenic -41504 ENSMUSG00000087622.1 ENSMUSG00000087622 ENSMUST00000145095 Gm12290 lincRNA Interval_159693 chr8 97632034 97633592 + 0 NA Intergenic Intergenic -66221 ENSMUSG00000098116.1 ENSMUSG00000098116 ENSMUST00000182678 Gm7191 processed_pseudogene Interval_10455 chr1 170996718 170997563 + 0 NA Intergenic Intergenic 15196 ENSMUSG00000104340.1 ENSMUSG00000104340 ENSMUST00000194503 Gm10522 lincRNA Interval_86023 chr19 34985975 34986353 + 0 NA Intergenic Intergenic 11017 ENSMUSG00000024795.11 ENSMUSG00000024795 ENSMUST00000225625 Kif20b protein_coding Interval_86776 chr19 43803581 43804762 + 0 NA intron (ENSMUSG00000025194.5, intron 8 of 31) protein_coding-intron (ENSMUSG00000025194.5, intron 8 of 31) -6351 ENSMUSG00000025194.5 ENSMUSG00000025194 ENSMUST00000099413 Abcc2 protein_coding Interval_28003 chr11 72104118 72104367 + 0 NA intron (ENSMUSG00000040543.16, intron 3 of 7) protein_coding-intron (ENSMUSG00000040543.16, intron 3 of 19) 31536 ENSMUSG00000040543.16 ENSMUSG00000040543 ENSMUST00000142471 Pitpnm3 protein_coding Interval_82903 chr18 78695934 78696611 + 0 NA Intergenic Intergenic 48144 ENSMUSG00000088733.1 ENSMUSG00000088733 ENSMUST00000158108 Gm23895 snRNA Interval_162368 chr8 127452538 127453272 + 0 NA intron (ENSMUSG00000025812.18, intron 1 of 2) protein_coding-intron (ENSMUSG00000025812.18, intron 19 of 23) -108530 ENSMUSG00000090074.1 ENSMUSG00000090074 ENSMUST00000161478 Gm6921 processed_pseudogene Interval_31879 chr11 103555797 103556501 + 0 NA intron (ENSMUSG00000034239.14, intron 7 of 13) protein_coding-intron (ENSMUSG00000034239.14, intron 7 of 13) 44956 ENSMUSG00000081676.1 ENSMUSG00000081676 ENSMUST00000119578 Gm11643 processed_pseudogene Interval_66675 chr16 36047485 36047814 + 0 NA intron (ENSMUSG00000003955.8, intron 2 of 2) protein_coding-intron (ENSMUSG00000003955.8, intron 3 of 4) 4745 ENSMUSG00000003955.8 ENSMUSG00000003955 ENSMUST00000231379 Fam162a protein_coding Interval_130811 chr5 130869748 130870091 + 0 NA Intergenic Intergenic -2082 ENSMUSG00000106694.1 ENSMUSG00000106694 ENSMUST00000200788 Gm42894 TEC Interval_81066 chr18 53510254 53510893 + 0 NA intron (ENSMUSG00000069378.14, intron 2 of 6) protein_coding-intron (ENSMUSG00000069378.14, intron 2 of 6) 46990 ENSMUSG00000069378.14 ENSMUSG00000069378 ENSMUST00000115398 Prdm6 protein_coding Interval_103852 chr3 53649568 53650672 + 0 NA intron (ENSMUSG00000037016.11, intron 1 of 1) protein_coding-intron (ENSMUSG00000037016.11, intron 1 of 23) 17208 ENSMUSG00000105840.1 ENSMUSG00000105840 ENSMUST00000198253 Gm6073 processed_pseudogene Interval_47480 chr13 85164716 85164960 + 0 NA Intergenic Intergenic 24118 ENSMUSG00000114954.1 ENSMUSG00000114954 ENSMUST00000224780 Gm47746 processed_pseudogene Interval_122142 chr5 18044036 18044315 + 0 NA Intergenic Intergenic 81626 ENSMUSG00000028777.8 ENSMUSG00000028777 ENSMUST00000030561 Gnat3 protein_coding Interval_107161 chr3 104059338 104059538 + 0 NA intron (ENSMUSG00000052539.15, intron 7 of 20) protein_coding-intron (ENSMUSG00000052539.15, intron 7 of 21) -1297 ENSMUSG00000104721.1 ENSMUSG00000104721 ENSMUST00000199859 Gm42696 sense_intronic Interval_173084 chrX 71214388 71215693 + 0 NA promoter-TSS (ENSMUSG00000031337.16) protein_coding-promoter-TSS (ENSMUSG00000031337.16) 4273 ENSMUSG00000031337.16 ENSMUSG00000031337 ENSMUST00000129722 Mtm1 protein_coding Interval_142724 chr6 145167930 145168131 + 0 NA exon (ENSMUSG00000030263.13, exon 13 of 19) protein_coding-exon (ENSMUSG00000030263.13, exon 13 of 19) -14245 ENSMUSG00000086863.1 ENSMUSG00000086863 ENSMUST00000141307 Gm15543 antisense Interval_174188 chrX 139024705 139025030 + 0 NA Intergenic Intergenic 42149 ENSMUSG00000052854.15 ENSMUSG00000052854 ENSMUST00000155201 Nrk protein_coding Interval_783 chr1 11013114 11013487 + 0 NA intron (ENSMUSG00000048960.13, intron 1 of 39) protein_coding-intron (ENSMUSG00000048960.13, intron 1 of 39) 19782 ENSMUSG00000048960.13 ENSMUSG00000048960 ENSMUST00000188154 Prex2 protein_coding Interval_14965 chr10 41518554 41520133 + 0 NA promoter-TSS (ENSMUSG00000019818.15) protein_coding-promoter-TSS (ENSMUSG00000019818.15) -549 ENSMUSG00000019818.15 ENSMUSG00000019818 ENSMUST00000186388 Cd164 protein_coding Interval_26910 chr11 61511440 61511961 + 0 NA promoter-TSS (ENSMUSG00000001039.12) protein_coding-promoter-TSS (ENSMUSG00000001039.12) 6445 ENSMUSG00000001039.12 ENSMUSG00000001039 ENSMUST00000146562 B9d1 protein_coding Interval_156989 chr8 63909521 63909832 + 0 NA Intergenic Intergenic -23488 ENSMUSG00000109818.1 ENSMUSG00000109818 ENSMUST00000210516 Gm35713 processed_pseudogene Interval_62645 chr15 95919992 95920350 + 0 NA intron (ENSMUSG00000064210.7, intron 8 of 20) protein_coding-intron (ENSMUSG00000064210.7, intron 7 of 19) -40354 ENSMUSG00000092978.1 ENSMUSG00000092978 ENSMUST00000175237 Gm25070 miRNA Interval_94125 chr2 84528180 84529466 + 0 NA intron (ENSMUSG00000087362.7, intron 1 of 2) lincRNA-intron (ENSMUSG00000087362.7, intron 1 of 2) 2499 ENSMUSG00000087362.7 ENSMUSG00000087362 ENSMUST00000139492 Gm13710 lincRNA Interval_107618 chr3 108910538 108912275 + 0 NA promoter-TSS (ENSMUSG00000027881.14) protein_coding-promoter-TSS (ENSMUSG00000027881.14) 62 ENSMUSG00000027881.14 ENSMUSG00000027881 ENSMUST00000197805 Prpf38b protein_coding Interval_63473 chr15 101283337 101284685 + 0 NA promoter-TSS (ENSMUSG00000037204.7) protein_coding-promoter-TSS (ENSMUSG00000037204.7) -2722 ENSMUSG00000037204.7 ENSMUSG00000037204 ENSMUST00000230525 Atg101 protein_coding Interval_86242 chr19 38037967 38038664 + 0 NA intron (ENSMUSG00000048612.16, intron 1 of 9) protein_coding-intron (ENSMUSG00000048612.16, intron 1 of 52) 5084 ENSMUSG00000048612.16 ENSMUSG00000048612 ENSMUST00000226084 Myof protein_coding Interval_44594 chr13 46575705 46576583 + 0 NA intron (ENSMUSG00000021373.16, intron 4 of 9) protein_coding-intron (ENSMUSG00000021373.16, intron 4 of 12) 43636 ENSMUSG00000114596.1 ENSMUSG00000114596 ENSMUST00000225040 Gm47523 antisense Interval_89527 chr2 21918005 21918812 + 0 NA Intergenic Intergenic -123353 ENSMUSG00000077572.1 ENSMUSG00000077572 ENSMUST00000104384 Gm24886 snoRNA Interval_774 chr1 10870037 10870993 + 0 NA Intergenic Intergenic 1827 ENSMUSG00000100648.1 ENSMUSG00000100648 ENSMUST00000188013 Gm28659 processed_pseudogene Interval_57296 chr15 8587614 8587904 + 0 NA Intergenic Intergenic -58168 ENSMUSG00000115577.1 ENSMUSG00000115577 ENSMUST00000228699 Gm49250 processed_pseudogene Interval_147221 chr7 64769191 64771197 + 0 NA intron (ENSMUSG00000030518.17, intron 6 of 6) protein_coding-intron (ENSMUSG00000030518.17, intron 7 of 9) 25611 ENSMUSG00000030519.14 ENSMUSG00000030519 ENSMUST00000206630 Apba2 protein_coding Interval_46106 chr13 61778823 61780246 + 0 NA Intergenic Intergenic -20369 ENSMUSG00000095905.2 ENSMUSG00000095905 ENSMUST00000178835 Selenok-ps4 processed_pseudogene Interval_3922 chr1 64794905 64795118 + 0 NA exon (ENSMUSG00000051344.13, exon 8 of 8) protein_coding-exon (ENSMUSG00000051344.13, exon 8 of 8) 41753 ENSMUSG00000051344.13 ENSMUSG00000051344 ENSMUST00000134097 Plekhm3 protein_coding Interval_35248 chr12 18932749 18933166 + 0 NA Intergenic Intergenic 23641 ENSMUSG00000116744.1 ENSMUSG00000116744 ENSMUST00000231428 Gm49764 lincRNA Interval_132371 chr5 144542786 144543138 + 0 NA Intergenic Intergenic -2940 ENSMUSG00000059991.7 ENSMUSG00000059991 ENSMUST00000071782 Nptx2 protein_coding Interval_92625 chr2 61660655 61660977 + 0 NA Intergenic Intergenic 16985 ENSMUSG00000064289.15 ENSMUSG00000064289 ENSMUST00000154693 Tank protein_coding Interval_70336 chr17 8599689 8600142 + 0 NA intron (ENSMUSG00000023868.17, intron 1 of 3) protein_coding-intron (ENSMUSG00000023868.17, intron 1 of 21) -31055 ENSMUSG00000084390.1 ENSMUSG00000084390 ENSMUST00000119013 Gm15425 processed_pseudogene Interval_24886 chr11 40745823 40747028 + 0 NA Intergenic Intergenic 7513 ENSMUSG00000020326.7 ENSMUSG00000020326 ENSMUST00000151359 Ccng1 protein_coding Interval_86142 chr19 37018149 37019285 + 0 NA Intergenic Intergenic 58532 ENSMUSG00000040565.8 ENSMUSG00000040565 ENSMUST00000236343 Btaf1 protein_coding Interval_146649 chr7 49132668 49133577 + 0 NA intron (ENSMUSG00000108950.1, intron 2 of 2) protein_coding-intron (ENSMUSG00000052512.17, intron 2 of 39) 1154 ENSMUSG00000108950.1 ENSMUSG00000108950 ENSMUST00000208621 9130015G15Rik antisense Interval_55107 chr14 78160718 78161020 + 0 NA Intergenic Intergenic 30609 ENSMUSG00000087932.1 ENSMUSG00000087932 ENSMUST00000157307 Mir1971 miRNA Interval_83527 chr18 88869327 88871050 + 0 NA TTS (ENSMUSG00000056153.15) protein_coding-TTS (ENSMUSG00000056153.15) 24071 ENSMUSG00000056153.15 ENSMUSG00000056153 ENSMUST00000147313 Socs6 protein_coding Interval_126393 chr5 87871345 87871802 + 0 NA Intergenic Intergenic -13456 ENSMUSG00000009580.15 ENSMUSG00000009580 ENSMUST00000113274 Odam protein_coding Interval_34865 chr12 12812552 12813510 + 0 NA Intergenic Intergenic 25046 ENSMUSG00000091430.1 ENSMUSG00000091430 ENSMUST00000171380 Platr19 lincRNA Interval_24491 chr11 33701369 33702279 + 0 NA intron (ENSMUSG00000053519.17, intron 1 of 8) protein_coding-intron (ENSMUSG00000053519.17, intron 1 of 7) -3726 ENSMUSG00000087328.1 ENSMUSG00000087328 ENSMUST00000125068 Gm12120 antisense Interval_76852 chr17 84529403 84531007 + 0 NA intron (ENSMUSG00000040852.6, intron 2 of 9) protein_coding-intron (ENSMUSG00000040852.6, intron 2 of 29) 21038 ENSMUSG00000117391.1 ENSMUSG00000117391 ENSMUST00000234072 4930500A05Rik antisense Interval_150494 chr7 111185925 111186163 + 0 NA Intergenic Intergenic -63360 ENSMUSG00000110424.1 ENSMUSG00000110424 ENSMUST00000210340 1700012D14Rik processed_transcript Interval_134318 chr6 25076380 25076814 + 0 NA Intergenic Intergenic 2306 ENSMUSG00000087867.1 ENSMUSG00000087867 ENSMUST00000157242 Gm24443 snoRNA Interval_161935 chr8 123871930 123873259 + 0 NA intron (ENSMUSG00000092329.1, intron 1 of 15) protein_coding-intron (ENSMUSG00000092329.1, intron 1 of 15) -12385 ENSMUSG00000031971.15 ENSMUSG00000031971 ENSMUST00000122421 Ccsap protein_coding Interval_3082 chr1 52982564 52983297 + 0 NA intron (ENSMUSG00000043629.12, intron 1 of 1) protein_coding-intron (ENSMUSG00000043629.12, intron 3 of 3) 37249 ENSMUSG00000043629.12 ENSMUSG00000043629 ENSMUST00000190726 1700019D03Rik protein_coding Interval_84522 chr19 12138361 12138560 + 0 NA Intergenic Intergenic -15264 ENSMUSG00000067522.3 ENSMUSG00000067522 ENSMUST00000087822 Olfr76 protein_coding Interval_160923 chr8 115083812 115083983 + 0 NA intron (ENSMUSG00000004637.15, intron 8 of 8) protein_coding-intron (ENSMUSG00000004637.15, intron 8 of 8) -30984 ENSMUSG00000088428.1 ENSMUSG00000088428 ENSMUST00000157803 Gm22556 rRNA Interval_112797 chr4 45054778 45055256 + 0 NA intron (ENSMUSG00000048232.12, intron 2 of 9) protein_coding-intron (ENSMUSG00000048232.12, intron 3 of 10) 3601 ENSMUSG00000048232.12 ENSMUSG00000048232 ENSMUST00000155583 Fbxo10 protein_coding Interval_63492 chr15 101436521 101436774 + 0 NA exon (ENSMUSG00000047641.8, exon 2 of 9) protein_coding-exon (ENSMUSG00000047641.8, exon 2 of 9) 2157 ENSMUSG00000047641.8 ENSMUSG00000047641 ENSMUST00000081945 Krt87 protein_coding Interval_112480 chr4 41506329 41507792 + 0 NA TTS (ENSMUSG00000028441.12) protein_coding-TTS (ENSMUSG00000028441.12) 1904 ENSMUSG00000028441.12 ENSMUSG00000028441 ENSMUST00000138217 1110017D15Rik protein_coding Interval_10116 chr1 165890877 165891128 + 0 NA TTS (ENSMUSG00000026565.18) protein_coding-TTS (ENSMUSG00000026565.18) -10842 ENSMUSG00000026565.18 ENSMUSG00000026565 ENSMUST00000176800 Pou2f1 protein_coding Interval_58668 chr15 36903747 36904087 + 0 NA Intergenic Intergenic -24101 ENSMUSG00000072618.2 ENSMUSG00000072618 ENSMUST00000100713 Gm10384 lincRNA Interval_66407 chr16 33697420 33698160 + 0 NA intron (ENSMUSG00000075254.12, intron 1 of 16) protein_coding-intron (ENSMUSG00000075254.12, intron 1 of 16) 13420 ENSMUSG00000075254.12 ENSMUSG00000075254 ENSMUST00000146518 Heg1 protein_coding Interval_48227 chr13 97298681 97299519 + 0 NA Intergenic Intergenic 15917 ENSMUSG00000097932.2 ENSMUSG00000097932 ENSMUST00000181148 C430039J16Rik lincRNA Interval_156384 chr8 47847689 47848155 + 0 NA intron (ENSMUSG00000031563.8, intron 18 of 22) protein_coding-intron (ENSMUSG00000031563.8, intron 18 of 22) 23440 ENSMUSG00000038064.7 ENSMUSG00000038064 ENSMUST00000038693 Cldn22 protein_coding Interval_11766 chr1 185287107 185287413 + 0 NA TTS (ENSMUSG00000039318.12) protein_coding-TTS (ENSMUSG00000039318.12) 9462 ENSMUSG00000039318.12 ENSMUSG00000039318 ENSMUST00000195534 Rab3gap2 protein_coding Interval_116358 chr4 110184666 110184902 + 0 NA Intergenic Intergenic 102743 ENSMUSG00000028546.17 ENSMUSG00000028546 ENSMUST00000142722 Elavl4 protein_coding Interval_114698 chr4 83944565 83945029 + 0 NA Intergenic Intergenic -55939 ENSMUSG00000085378.1 ENSMUSG00000085378 ENSMUST00000128214 Gm11415 lincRNA Interval_67982 chr16 62646200 62646667 + 0 NA Intergenic Intergenic 45050 ENSMUSG00000116962.1 ENSMUSG00000116962 ENSMUST00000232576 Gm19000 processed_pseudogene Interval_111665 chr4 25559966 25560726 + 0 NA Intergenic Intergenic 6476 ENSMUSG00000065040.1 ENSMUSG00000065040 ENSMUST00000083106 Gm24977 snRNA Interval_36695 chr12 52123470 52123787 + 0 NA intron (ENSMUSG00000035142.18, intron 4 of 4) protein_coding-intron (ENSMUSG00000035142.18, intron 3 of 10) 44614 ENSMUSG00000112063.1 ENSMUSG00000112063 ENSMUST00000218420 Gm32220 processed_pseudogene Interval_23055 chr11 19459712 19460162 + 0 NA Intergenic Intergenic 76252 ENSMUSG00000082737.3 ENSMUSG00000082737 ENSMUST00000120961 Gm12026 processed_pseudogene Interval_125484 chr5 67492346 67493290 + 0 NA Intergenic Intergenic 28915 ENSMUSG00000107385.3 ENSMUSG00000107385 ENSMUST00000202828 C330024D21Rik processed_transcript Interval_4434 chr1 74130916 74132232 + 0 NA intron (ENSMUSG00000061815.11, intron 7 of 11) protein_coding-intron (ENSMUSG00000061815.11, intron 7 of 11) 5995 ENSMUSG00000061815.11 ENSMUSG00000061815 ENSMUST00000127134 Rufy4 protein_coding Interval_70753 chr17 14173493 14174477 + 0 NA Intergenic Intergenic -29743 ENSMUSG00000117185.1 ENSMUSG00000117185 ENSMUST00000232962 Gm34510 antisense Interval_54403 chr14 68560843 68561124 + 0 NA Intergenic Intergenic 21112 ENSMUSG00000022057.8 ENSMUSG00000022057 ENSMUST00000022641 Adamdec1 protein_coding Interval_137183 chr6 69383792 69384741 + 0 NA Intergenic Intergenic -5794 ENSMUSG00000076550.3 ENSMUSG00000076550 ENSMUST00000196595 Igkv4-63 IG_V_gene Interval_81552 chr18 61643564 61644118 + 0 NA intron (ENSMUSG00000098098.7, intron 1 of 2) lincRNA-intron (ENSMUSG00000098098.7, intron 1 of 2) 4053 ENSMUSG00000065592.2 ENSMUSG00000065592 ENSMUST00000083658 Mir145a miRNA Interval_43209 chr13 25269112 25270387 + 0 NA TTS (ENSMUSG00000048978.14) protein_coding-TTS (ENSMUSG00000048978.14) 221 ENSMUSG00000048978.14 ENSMUSG00000048978 ENSMUST00000126348 Nrsn1 protein_coding Interval_149592 chr7 99901889 99903508 + 0 NA promoter-TSS (ENSMUSG00000035211.9) protein_coding-promoter-TSS (ENSMUSG00000035211.9) 1458 ENSMUSG00000108985.1 ENSMUSG00000108985 ENSMUST00000207625 A930030B08Rik TEC Interval_151603 chr7 125064465 125065324 + 0 NA Intergenic Intergenic 4597 ENSMUSG00000108407.1 ENSMUSG00000108407 ENSMUST00000206859 Gm45093 TEC Interval_168482 chr9 82133603 82134290 + 0 NA intron (ENSMUSG00000043289.12, intron 4 of 4) protein_coding-intron (ENSMUSG00000043289.12, intron 4 of 4) 63249 ENSMUSG00000110748.1 ENSMUSG00000110748 ENSMUST00000214030 Gm19228 processed_pseudogene Interval_54804 chr14 75256126 75256739 + 0 NA intron (ENSMUSG00000021999.9, intron 2 of 10) protein_coding-intron (ENSMUSG00000021999.9, intron 2 of 10) -5581 ENSMUSG00000104689.1 ENSMUSG00000104689 ENSMUST00000199232 Gm44482 miRNA Interval_142754 chr6 145351391 145352381 + 0 NA Intergenic Intergenic -14972 ENSMUSG00000088362.1 ENSMUSG00000088362 ENSMUST00000157737 Gm23498 snoRNA Interval_109698 chr3 146054836 146055375 + 0 NA intron (ENSMUSG00000043020.13, intron 17 of 22) protein_coding-intron (ENSMUSG00000043020.13, intron 17 of 22) -7920 ENSMUSG00000043020.13 ENSMUSG00000043020 ENSMUST00000161104 Wdr63 protein_coding Interval_154142 chr8 13026167 13026555 + 0 NA intron (ENSMUSG00000031443.7, intron 1 of 7) protein_coding-intron (ENSMUSG00000031443.7, intron 1 of 7) 327 ENSMUSG00000031443.7 ENSMUSG00000031443 ENSMUST00000033820 F7 protein_coding Interval_10310 chr1 168395377 168397022 + 0 NA intron (ENSMUSG00000052534.15, intron 2 of 7) protein_coding-intron (ENSMUSG00000052534.15, intron 2 of 6) 36071 ENSMUSG00000052534.15 ENSMUSG00000052534 ENSMUST00000176791 Pbx1 protein_coding Interval_124525 chr5 50026854 50027186 + 0 NA intron (ENSMUSG00000029090.12, intron 1 of 18) protein_coding-intron (ENSMUSG00000029090.12, intron 1 of 18) 31625 ENSMUSG00000029090.12 ENSMUSG00000029090 ENSMUST00000199132 Adgra3 protein_coding Interval_116130 chr4 107996522 107996963 + 0 NA intron (ENSMUSG00000008932.10, intron 3 of 10) protein_coding-intron (ENSMUSG00000008932.10, intron 3 of 10) 28408 ENSMUSG00000008932.10 ENSMUSG00000008932 ENSMUST00000124190 Slc1a7 protein_coding Interval_49442 chr13 112023465 112023706 + 0 NA Intergenic Intergenic 18083 ENSMUSG00000086092.1 ENSMUSG00000086092 ENSMUST00000156109 Gm15323 lincRNA Interval_133968 chr6 16994931 16995848 + 0 NA Intergenic Intergenic 69607 ENSMUSG00000084772.1 ENSMUSG00000084772 ENSMUST00000140746 Gm15473 lincRNA Interval_10997 chr1 177872895 177873270 + 0 NA intron (ENSMUSG00000102483.2, intron 10 of 21) protein_coding-intron (ENSMUSG00000102483.2, intron 10 of 21) 64651 ENSMUSG00000102483.2 ENSMUSG00000102483 ENSMUST00000194528 Catspere1 protein_coding Interval_109208 chr3 137895084 137895675 + 0 NA exon (ENSMUSG00000074212.7, exon 3 of 3) protein_coding-exon (ENSMUSG00000074212.7, exon 3 of 3) -1765 ENSMUSG00000105748.1 ENSMUSG00000105748 ENSMUST00000197530 Gm43088 TEC Interval_161924 chr8 123789965 123790831 + 0 NA intron (ENSMUSG00000092329.1, intron 1 of 15) protein_coding-intron (ENSMUSG00000092329.1, intron 1 of 15) 22847 ENSMUSG00000110456.1 ENSMUSG00000110456 ENSMUST00000211815 Gm45865 TEC Interval_53076 chr14 54253506 54254428 + 0 NA promoter-TSS (ENSMUSG00000022174.8) protein_coding-promoter-TSS (ENSMUSG00000022174.8) -53 ENSMUSG00000022174.8 ENSMUSG00000022174 ENSMUST00000128231 Dad1 protein_coding Interval_144716 chr7 27733571 27734220 + 0 NA intron (ENSMUSG00000037640.15, intron 2 of 5) protein_coding-intron (ENSMUSG00000037640.15, intron 1 of 4) -3061 ENSMUSG00000037640.15 ENSMUSG00000037640 ENSMUST00000167955 Zfp60 protein_coding Interval_121455 chr4 155936148 155936438 + 0 NA Intergenic Intergenic -7538 ENSMUSG00000023286.16 ENSMUSG00000023286 ENSMUST00000124092 Ube2j2 protein_coding Interval_111730 chr4 26929984 26930750 + 0 NA Intergenic Intergenic 196142 ENSMUSG00000083447.1 ENSMUSG00000083447 ENSMUST00000120562 Gm11904 processed_pseudogene Interval_164264 chr9 34745850 34746208 + 0 NA intron (ENSMUSG00000032036.15, intron 1 of 15) protein_coding-intron (ENSMUSG00000032036.15, intron 1 of 16) 183480 ENSMUSG00000053889.5 ENSMUSG00000053889 ENSMUST00000066604 Kirrel3os antisense Interval_21468 chr10 128768222 128768586 + 0 NA Intergenic Intergenic 8846 ENSMUSG00000045055.5 ENSMUSG00000045055 ENSMUST00000059546 Rpsa-ps2 processed_pseudogene Interval_4908 chr1 82316193 82317150 + 0 NA promoter-TSS (ENSMUSG00000026142.15) protein_coding-promoter-TSS (ENSMUSG00000026142.15) 29 ENSMUSG00000026142.15 ENSMUSG00000026142 ENSMUST00000140020 Rhbdd1 protein_coding Interval_70671 chr17 12942345 12942583 + 0 NA TTS (ENSMUSG00000023832.14) protein_coding-TTS (ENSMUSG00000023832.14) -14782 ENSMUSG00000062480.12 ENSMUSG00000062480 ENSMUST00000160921 Acat3 protein_coding Interval_137199 chr6 69828687 69828901 + 0 NA Intergenic Intergenic -4851 ENSMUSG00000094433.2 ENSMUSG00000094433 ENSMUST00000103368 Igkv5-43 IG_V_gene Interval_1372 chr1 21058021 21058354 + 0 NA intron (ENSMUSG00000041779.5, intron 1 of 10) protein_coding-intron (ENSMUSG00000041779.5, intron 1 of 10) -14531 ENSMUSG00000041779.5 ENSMUSG00000041779 ENSMUST00000187210 Tram2 protein_coding Interval_64624 chr16 13732848 13734024 + 0 NA intron (ENSMUSG00000086550.2, intron 1 of 2) antisense-intron (ENSMUSG00000086550.2, intron 1 of 2) -2757 ENSMUSG00000022683.13 ENSMUSG00000022683 ENSMUST00000156504 Pla2g10 protein_coding Interval_105266 chr3 84352523 84352874 + 0 NA intron (ENSMUSG00000104004.1, intron 3 of 3) lincRNA-intron (ENSMUSG00000104004.1, intron 3 of 3) 27223 ENSMUSG00000104004.1 ENSMUSG00000104004 ENSMUST00000192777 4930565D16Rik lincRNA Interval_38055 chr12 75378519 75380191 + 0 NA intron (ENSMUSG00000046768.13, intron 2 of 3) protein_coding-intron (ENSMUSG00000046768.13, intron 2 of 4) 37426 ENSMUSG00000048982.3 ENSMUSG00000048982 ENSMUST00000051079 Gphb5 protein_coding Interval_19499 chr10 100567397 100567603 + 0 NA TTS (ENSMUSG00000019971.10) protein_coding-TTS (ENSMUSG00000019971.10) -9926 ENSMUSG00000112000.1 ENSMUSG00000112000 ENSMUST00000218156 Gm47956 processed_transcript Interval_71491 chr17 24126579 24127741 + 0 NA intron (ENSMUSG00000024122.16, intron 1 of 6) protein_coding-intron (ENSMUSG00000024122.16, intron 1 of 13) -6366 ENSMUSG00000024122.16 ENSMUSG00000024122 ENSMUST00000128997 Pdpk1 protein_coding Interval_58719 chr15 37317848 37318051 + 0 NA promoter-TSS (ENSMUSG00000022286.16) protein_coding-promoter-TSS (ENSMUSG00000022286.16) 14860 ENSMUSG00000089811.2 ENSMUSG00000089811 ENSMUST00000159341 Gm16138 processed_pseudogene Interval_64568 chr16 13371763 13372879 + 0 NA intron (ENSMUSG00000087526.2, intron 4 of 7) protein_coding-intron (ENSMUSG00000009569.14, intron 3 of 16) 13900 ENSMUSG00000009569.14 ENSMUSG00000009569 ENSMUST00000149359 Mrtfb protein_coding Interval_30474 chr11 94596217 94596732 + 0 NA intron (ENSMUSG00000076435.3, intron 1 of 6) protein_coding-intron (ENSMUSG00000076435.3, intron 1 of 15) 5295 ENSMUSG00000076435.3 ENSMUSG00000076435 ENSMUST00000155122 Acsf2 protein_coding Interval_44382 chr13 44478964 44479330 + 0 NA intron (ENSMUSG00000113010.1, intron 3 of 3) lincRNA-intron (ENSMUSG00000113010.1, intron 3 of 3) -23844 ENSMUSG00000098107.1 ENSMUSG00000098107 ENSMUST00000183264 Gm27007 lincRNA Interval_102862 chr3 32360577 32361170 + 0 NA TTS (ENSMUSG00000027663.12) protein_coding-TTS (ENSMUSG00000027663.12) 5141 ENSMUSG00000027663.12 ENSMUSG00000027663 ENSMUST00000195055 Zmat3 protein_coding Interval_88751 chr2 10284313 10285196 + 0 NA Intergenic Intergenic -87694 ENSMUSG00000061186.15 ENSMUSG00000061186 ENSMUST00000041105 Sfmbt2 protein_coding Interval_77630 chr17 93358617 93358901 + 0 NA Intergenic Intergenic 27296 ENSMUSG00000117452.1 ENSMUSG00000117452 ENSMUST00000234060 Gm6764 processed_pseudogene Interval_47964 chr13 94702660 94703480 + 0 NA promoter-TSS (ENSMUSG00000113904.1) lincRNA-promoter-TSS (ENSMUSG00000113904.1) -352 ENSMUSG00000113904.1 ENSMUSG00000113904 ENSMUST00000220503 Gm32351 lincRNA Interval_17624 chr10 78296831 78297373 + 0 NA intron (ENSMUSG00000001211.15, intron 2 of 9) protein_coding-intron (ENSMUSG00000001211.15, intron 2 of 9) -1213 ENSMUSG00000112442.1 ENSMUSG00000112442 ENSMUST00000219008 Gm47992 TEC Interval_150781 chr7 114398183 114398715 + 0 NA intron (ENSMUSG00000087475.3, intron 1 of 4) lincRNA-intron (ENSMUSG00000087475.3, intron 1 of 4) 16712 ENSMUSG00000087475.3 ENSMUSG00000087475 ENSMUST00000124673 4933406I18Rik lincRNA Interval_148847 chr7 89266312 89266824 + 0 NA intron (ENSMUSG00000039428.11, intron 2 of 5) protein_coding-intron (ENSMUSG00000039428.11, intron 4 of 14) 24731 ENSMUSG00000094780.1 ENSMUSG00000094780 ENSMUST00000180212 Gm24659 miRNA Interval_97068 chr2 130941915 130942197 + 0 NA intron (ENSMUSG00000027312.14, intron 3 of 23) protein_coding-intron (ENSMUSG00000027312.14, intron 3 of 28) 35125 ENSMUSG00000027312.14 ENSMUSG00000027312 ENSMUST00000151364 Atrn protein_coding Interval_64401 chr16 11133731 11134739 + 0 NA intron (ENSMUSG00000022498.16, intron 1 of 4) protein_coding-intron (ENSMUSG00000022498.16, intron 1 of 11) 318 ENSMUSG00000022498.16 ENSMUSG00000022498 ENSMUST00000118679 Txndc11 protein_coding Interval_112098 chr4 34673934 34674236 + 0 NA TTS (ENSMUSG00000028293.14) protein_coding-TTS (ENSMUSG00000028293.14) -9794 ENSMUSG00000088338.1 ENSMUSG00000088338 ENSMUST00000157713 Gm22849 misc_RNA Interval_92653 chr2 62040124 62040668 + 0 NA Intergenic Intergenic -69724 ENSMUSG00000083018.1 ENSMUSG00000083018 ENSMUST00000121668 Gm13555 processed_pseudogene Interval_41413 chr12 113574653 113575101 + 0 NA promoter-TSS (ENSMUSG00000091606.2) IG_V_pseudogene-promoter-TSS (ENSMUSG00000091606.2) -196 ENSMUSG00000091606.2 ENSMUSG00000091606 ENSMUST00000170946 Ighv2-1 IG_V_pseudogene Interval_165814 chr9 53383929 53385128 + 0 NA intron (ENSMUSG00000034487.4, intron 1 of 7) protein_coding-intron (ENSMUSG00000034487.4, intron 1 of 7) -6089 ENSMUSG00000034487.4 ENSMUSG00000034487 ENSMUST00000214164 Poglut3 protein_coding Interval_104609 chr3 68761404 68762884 + 0 NA promoter-TSS (ENSMUSG00000102677.1) lincRNA-promoter-TSS (ENSMUSG00000102677.1) 649 ENSMUSG00000102936.1 ENSMUSG00000102936 ENSMUST00000191767 Gm35584 lincRNA Interval_86704 chr19 42770136 42770414 + 0 NA promoter-TSS (ENSMUSG00000025188.15) protein_coding-promoter-TSS (ENSMUSG00000025188.15) 7988 ENSMUSG00000025188.15 ENSMUSG00000025188 ENSMUST00000161761 Hps1 protein_coding Interval_30114 chr11 89298325 89298538 + 0 NA Intergenic Intergenic 3901 ENSMUSG00000048616.4 ENSMUSG00000048616 ENSMUST00000061728 Nog protein_coding Interval_57216 chr15 7881737 7881997 + 0 NA intron (ENSMUSG00000039828.7, intron 2 of 2) protein_coding-intron (ENSMUSG00000039828.7, intron 17 of 17) 71021 ENSMUSG00000022144.4 ENSMUSG00000022144 ENSMUST00000022744 Gdnf protein_coding Interval_167082 chr9 65133639 65134757 + 0 NA intron (ENSMUSG00000032816.15, intron 18 of 19) protein_coding-intron (ENSMUSG00000032816.15, intron 18 of 19) -7014 ENSMUSG00000032394.6 ENSMUSG00000032394 ENSMUST00000217135 Igdcc3 protein_coding Interval_257 KZ289068.1 348411 348628 + 0 NA NA NA NA NA Interval_107108 chr3 103626569 103626890 + 0 NA intron (ENSMUSG00000027849.19, intron 5 of 6) protein_coding-intron (ENSMUSG00000027849.19, intron 5 of 7) 19339 ENSMUSG00000087119.4 ENSMUSG00000087119 ENSMUST00000117271 Atg4a-ps protein_coding Interval_131938 chr5 140911393 140911618 + 0 NA intron (ENSMUSG00000036526.8, intron 3 of 24) protein_coding-intron (ENSMUSG00000036526.8, intron 3 of 24) -81348 ENSMUSG00000000149.10 ENSMUSG00000000149 ENSMUST00000198447 Gna12 protein_coding Interval_3836 chr1 63441960 63442964 + 0 NA Intergenic Intergenic -28157 ENSMUSG00000025964.15 ENSMUSG00000025964 ENSMUST00000141545 Adam23 protein_coding Interval_64948 chr16 17456773 17457691 + 0 NA intron (ENSMUSG00000006134.4, intron 1 of 1) protein_coding-intron (ENSMUSG00000006134.4, intron 1 of 2) 4756 ENSMUSG00000006134.4 ENSMUSG00000006134 ENSMUST00000231629 Crkl protein_coding Interval_172446 chrX 20413525 20413839 + 0 NA Intergenic Intergenic -12035 ENSMUSG00000037315.15 ENSMUSG00000037315 ENSMUST00000043693 Jade3 protein_coding Interval_34683 chr12 8673486 8675190 + 0 NA promoter-TSS (ENSMUSG00000020594.14) protein_coding-promoter-TSS (ENSMUSG00000020594.14) 204 ENSMUSG00000020594.14 ENSMUSG00000020594 ENSMUST00000171608 Pum2 protein_coding Interval_90498 chr2 30817408 30818293 + 0 NA promoter-TSS (ENSMUSG00000026857.9) protein_coding-promoter-TSS (ENSMUSG00000026857.9) 9908 ENSMUSG00000026857.9 ENSMUSG00000026857 ENSMUST00000143970 Ntmt1 protein_coding Interval_152874 chr7 139398492 139398949 + 0 NA intron (ENSMUSG00000025477.14, intron 1 of 15) protein_coding-intron (ENSMUSG00000025477.14, intron 1 of 15) -101855 ENSMUSG00000110115.1 ENSMUSG00000110115 ENSMUST00000209810 Gm32486 lincRNA Interval_112160 chr4 35034554 35035380 + 0 NA intron (ENSMUSG00000073910.10, intron 2 of 3) protein_coding-intron (ENSMUSG00000073910.10, intron 2 of 3) 72747 ENSMUSG00000086792.1 ENSMUSG00000086792 ENSMUST00000144419 Gm12364 antisense Interval_23179 chr11 20375898 20376653 + 0 NA Intergenic Intergenic -40262 ENSMUSG00000078965.5 ENSMUSG00000078965 ENSMUST00000180654 Gm12033 processed_pseudogene Interval_102306 chr3 21564629 21564950 + 0 NA Intergenic Intergenic -39021 ENSMUSG00000106085.1 ENSMUSG00000106085 ENSMUST00000199468 Gm43675 unprocessed_pseudogene Interval_62424 chr15 92395891 92398115 + 0 NA exon (ENSMUSG00000036218.16, exon 1 of 10) protein_coding-exon (ENSMUSG00000036218.16, exon 1 of 10) 52644 ENSMUSG00000097068.2 ENSMUSG00000097068 ENSMUST00000181901 Gm26760 lincRNA Interval_33111 chr11 114511739 114512083 + 0 NA Intergenic Intergenic -63051 ENSMUSG00000062391.3 ENSMUSG00000062391 ENSMUST00000141088 4932435O22Rik lincRNA Interval_155975 chr8 41366137 41367118 + 0 NA intron (ENSMUSG00000031591.14, intron 1 of 13) protein_coding-intron (ENSMUSG00000031591.14, intron 1 of 13) 8146 ENSMUSG00000031591.14 ENSMUSG00000031591 ENSMUST00000143057 Asah1 protein_coding Interval_32707 chr11 109871737 109872570 + 0 NA Intergenic Intergenic 26275 ENSMUSG00000087393.1 ENSMUSG00000087393 ENSMUST00000143247 1700023C21Rik lincRNA Interval_72089 chr17 27976143 27976519 + 0 NA intron (ENSMUSG00000024219.16, intron 2 of 23) protein_coding-intron (ENSMUSG00000024219.16, intron 2 of 24) -6061 ENSMUSG00000117130.1 ENSMUSG00000117130 ENSMUST00000232846 Gm49802 sense_intronic Interval_174344 chrX 145908287 145908832 + 0 NA Intergenic Intergenic 75242 ENSMUSG00000080915.1 ENSMUSG00000080915 ENSMUST00000120604 Gm6446 processed_pseudogene Interval_43989 chr13 38806129 38806857 + 0 NA intron (ENSMUSG00000114319.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000114767.1, intron 3 of 3) 19262 ENSMUSG00000114319.1 ENSMUSG00000114319 ENSMUST00000225304 Gm47509 lincRNA Interval_70700 chr17 13668218 13669376 + 0 NA promoter-TSS (ENSMUSG00000117042.1) lincRNA-promoter-TSS (ENSMUSG00000117042.1) 94 ENSMUSG00000117042.1 ENSMUSG00000117042 ENSMUST00000185626 2700054A10Rik lincRNA Interval_58496 chr15 35200839 35201712 + 0 NA intron (ENSMUSG00000115345.1, intron 1 of 4) lincRNA-intron (ENSMUSG00000115345.1, intron 1 of 4) 471 ENSMUSG00000115345.1 ENSMUSG00000115345 ENSMUST00000228112 Gm33497 lincRNA Interval_103940 chr3 55226638 55227366 + 0 NA Intergenic Intergenic 44974 ENSMUSG00000027794.4 ENSMUSG00000027794 ENSMUST00000029369 Sohlh2 protein_coding Interval_26640 chr11 59384544 59385826 + 0 NA Intergenic Intergenic -9528 ENSMUSG00000049291.6 ENSMUSG00000049291 ENSMUST00000061481 Prss38 protein_coding Interval_804 chr1 11499579 11499856 + 0 NA intron (ENSMUSG00000057715.13, intron 1 of 1) protein_coding-intron (ENSMUSG00000057715.13, intron 1 of 13) -79589 ENSMUSG00000057715.13 ENSMUSG00000057715 ENSMUST00000191437 A830018L16Rik protein_coding Interval_40776 chr12 108297054 108297285 + 0 NA Intergenic Intergenic -9379 ENSMUSG00000021260.8 ENSMUSG00000021260 ENSMUST00000223395 Hhipl1 protein_coding Interval_107972 chr3 118128328 118128962 + 0 NA Intergenic Intergenic 159515 ENSMUSG00000104703.1 ENSMUSG00000104703 ENSMUST00000197578 4921521D15Rik lincRNA Interval_83489 chr18 87222365 87222626 + 0 NA Intergenic Intergenic -9437 ENSMUSG00000118250.1 ENSMUSG00000118250 ENSMUST00000236658 Gm5234 processed_pseudogene Interval_172050 chr9 124055449 124055652 + 0 NA Intergenic Intergenic 33578 ENSMUSG00000035448.9 ENSMUSG00000035448 ENSMUST00000039171 Ccr3 protein_coding Interval_141316 chr6 127141829 127142876 + 0 NA intron (ENSMUSG00000000184.12, intron 2 of 2) protein_coding-intron (ENSMUSG00000000184.12, intron 3 of 4) -7037 ENSMUSG00000097166.1 ENSMUSG00000097166 ENSMUST00000180569 9330179D12Rik antisense Interval_29309 chr11 82845338 82846440 + 0 NA exon (ENSMUSG00000020696.18, exon 2 of 8) protein_coding-exon (ENSMUSG00000020696.18, exon 2 of 8) 203 ENSMUSG00000020696.18 ENSMUSG00000020696 ENSMUST00000126660 Rffl protein_coding Interval_17757 chr10 79925135 79925575 + 0 NA Intergenic Intergenic -4147 ENSMUSG00000035781.14 ENSMUSG00000035781 ENSMUST00000219867 R3hdm4 protein_coding Interval_138030 chr6 84404578 84404996 + 0 NA Intergenic Intergenic 19051 ENSMUSG00000107797.1 ENSMUSG00000107797 ENSMUST00000203521 Gm10445 lincRNA Interval_71085 chr17 17826002 17828865 + 0 NA intron (ENSMUSG00000080316.11, intron 1 of 3) protein_coding-intron (ENSMUSG00000080316.11, intron 1 of 9) 109 ENSMUSG00000080316.11 ENSMUSG00000080316 ENSMUST00000178888 Spaca6 protein_coding Interval_157352 chr8 69808208 69809335 + 0 NA promoter-TSS (ENSMUSG00000036246.14) protein_coding-promoter-TSS (ENSMUSG00000036246.14) -1922 ENSMUSG00000036246.14 ENSMUSG00000036246 ENSMUST00000144540 Gmip protein_coding Interval_31686 chr11 102248704 102250041 + 0 NA intron (ENSMUSG00000034773.16, intron 1 of 10) protein_coding-intron (ENSMUSG00000034773.16, intron 1 of 9) -6284 ENSMUSG00000034773.16 ENSMUSG00000034773 ENSMUST00000140040 Hrob protein_coding Interval_138701 chr6 91277538 91277889 + 0 NA Intergenic Intergenic 64886 ENSMUSG00000064080.12 ENSMUSG00000064080 ENSMUST00000137029 Fbln2 protein_coding Interval_43026 chr13 23306766 23310098 + 0 NA intron (ENSMUSG00000085488.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000085488.1, intron 1 of 1) 4968 ENSMUSG00000085488.1 ENSMUSG00000085488 ENSMUST00000155432 4930557F10Rik lincRNA Interval_77301 chr17 87900950 87901934 + 0 NA Intergenic Intergenic -19535 ENSMUSG00000093922.1 ENSMUSG00000093922 ENSMUST00000179601 Rpl36-ps4 protein_coding Interval_91362 chr2 38249775 38249965 + 0 NA intron (ENSMUSG00000035392.17, intron 1 of 9) protein_coding-intron (ENSMUSG00000035392.17, intron 1 of 21) -24748 ENSMUSG00000105046.1 ENSMUSG00000105046 ENSMUST00000200061 Gm44455 miRNA Interval_165985 chr9 55208527 55209580 + 0 NA promoter-TSS (ENSMUSG00000032309.15) protein_coding-promoter-TSS (ENSMUSG00000032309.15) 67 ENSMUSG00000032309.15 ENSMUSG00000032309 ENSMUST00000133795 Fbxo22 protein_coding Interval_16165 chr10 61175546 61176496 + 0 NA promoter-TSS (ENSMUSG00000020096.21) protein_coding-promoter-TSS (ENSMUSG00000020096.21) 759 ENSMUSG00000020096.21 ENSMUSG00000020096 ENSMUST00000126831 Tbata protein_coding Interval_66866 chr16 38191249 38192933 + 0 NA TTS (ENSMUSG00000022812.14) protein_coding-TTS (ENSMUSG00000022812.14) 15500 ENSMUSG00000098908.1 ENSMUSG00000098908 ENSMUST00000184976 Gm27931 snoRNA Interval_135605 chr6 41419275 41419474 + 0 NA intron (ENSMUSG00000059014.8, intron 3 of 3) unprocessed_pseudogene-intron (ENSMUSG00000059014.8, intron 3 of 3) 2462 ENSMUSG00000059014.8 ENSMUSG00000059014 ENSMUST00000160346 Gm5409 unprocessed_pseudogene Interval_106032 chr3 91029762 91031043 + 0 NA Intergenic Intergenic -9171 ENSMUSG00000105919.1 ENSMUSG00000105919 ENSMUST00000199715 Gm7166 processed_pseudogene Interval_93006 chr2 69530469 69531260 + 0 NA intron (ENSMUSG00000027070.14, intron 9 of 24) protein_coding-intron (ENSMUSG00000027070.14, intron 9 of 78) -21719 ENSMUSG00000027070.14 ENSMUSG00000027070 ENSMUST00000092551 Lrp2 protein_coding Interval_34744 chr12 9259279 9259731 + 0 NA Intergenic Intergenic -111933 ENSMUSG00000113913.1 ENSMUSG00000113913 ENSMUST00000223136 Gm46323 lincRNA Interval_86888 chr19 44655571 44656097 + 0 NA Intergenic Intergenic 39626 ENSMUSG00000097683.2 ENSMUSG00000097683 ENSMUST00000181365 Gm26644 lincRNA Interval_153808 chr8 8812813 8813064 + 0 NA intron (ENSMUSG00000109371.1, intron 2 of 4) lincRNA-intron (ENSMUSG00000109371.1, intron 2 of 4) 76968 ENSMUSG00000109062.1 ENSMUSG00000109062 ENSMUST00000209128 Gm44622 lincRNA Interval_40651 chr12 106462171 106462682 + 0 NA Intergenic Intergenic 3276 ENSMUSG00000091762.1 ENSMUSG00000091762 ENSMUST00000167139 Gm3191 processed_pseudogene Interval_168574 chr9 83691362 83692208 + 0 NA exon (ENSMUSG00000100155.1, exon 2 of 3) lincRNA-exon (ENSMUSG00000100155.1, exon 2 of 3) 310 ENSMUSG00000100155.1 ENSMUSG00000100155 ENSMUST00000189326 Gm2109 lincRNA Interval_41366 chr12 113103730 113104943 + 0 NA intron (ENSMUSG00000021144.14, intron 1 of 20) protein_coding-intron (ENSMUSG00000021144.14, intron 1 of 20) -27212 ENSMUSG00000021144.14 ENSMUSG00000021144 ENSMUST00000156030 Mta1 protein_coding Interval_142196 chr6 138152792 138152992 + 0 NA intron (ENSMUSG00000008540.11, intron 2 of 2) protein_coding-intron (ENSMUSG00000008540.11, intron 3 of 3) 12338 ENSMUSG00000008540.11 ENSMUSG00000008540 ENSMUST00000125810 Mgst1 protein_coding Interval_53640 chr14 60501433 60501638 + 0 NA intron (ENSMUSG00000101797.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000101797.1, intron 1 of 2) 16327 ENSMUSG00000101797.1 ENSMUSG00000101797 ENSMUST00000190392 Gm29266 lincRNA Interval_142468 chr6 142634737 142635413 + 0 NA intron (ENSMUSG00000030249.15, intron 23 of 38) protein_coding-intron (ENSMUSG00000030249.15, intron 23 of 39) 20480 ENSMUSG00000104234.1 ENSMUSG00000104234 ENSMUST00000194811 5330439B14Rik antisense Interval_105462 chr3 86805656 86806202 + 0 NA intron (ENSMUSG00000028078.14, intron 9 of 15) protein_coding-intron (ENSMUSG00000028078.14, intron 9 of 15) -27276 ENSMUSG00000104108.1 ENSMUSG00000104108 ENSMUST00000194490 Gm37876 antisense Interval_43260 chr13 27831366 27831610 + 0 NA Intergenic Intergenic -17854 ENSMUSG00000062551.13 ENSMUSG00000062551 ENSMUST00000054932 Prl2c1 protein_coding Interval_93393 chr2 72732887 72733796 + 0 NA Intergenic Intergenic 29831 ENSMUSG00000085252.1 ENSMUSG00000085252 ENSMUST00000124829 8430437L04Rik lincRNA Interval_117758 chr4 126069190 126070523 + 0 NA TTS (ENSMUSG00000079942.5) processed_pseudogene-TTS (ENSMUSG00000079942.5) 403 ENSMUSG00000079942.5 ENSMUSG00000079942 ENSMUST00000116058 Rpl28-ps3 processed_pseudogene Interval_103711 chr3 51842352 51842665 + 0 NA intron (ENSMUSG00000061143.15, intron 2 of 4) protein_coding-intron (ENSMUSG00000061143.15, intron 2 of 4) -12103 ENSMUSG00000103284.1 ENSMUSG00000103284 ENSMUST00000193469 3110080O07Rik TEC Interval_127366 chr5 103445061 103445403 + 0 NA intron (ENSMUSG00000034573.14, intron 1 of 17) protein_coding-intron (ENSMUSG00000034573.14, intron 1 of 47) -84334 ENSMUSG00000034573.14 ENSMUSG00000034573 ENSMUST00000200581 Ptpn13 protein_coding Interval_166335 chr9 58419436 58420502 + 0 NA Intergenic Intergenic -35153 ENSMUSG00000097651.2 ENSMUSG00000097651 ENSMUST00000181967 4930461G14Rik lincRNA Interval_73314 chr17 36154196 36155299 + 0 NA promoter-TSS (ENSMUSG00000038311.13) lincRNA-promoter-TSS (ENSMUSG00000038311.13) -3241 ENSMUSG00000092289.1 ENSMUSG00000092289 ENSMUST00000174752 Gm6659 processed_pseudogene Interval_114066 chr4 62931666 62932112 + 0 NA Intergenic Intergenic -7452 ENSMUSG00000087967.1 ENSMUSG00000087967 ENSMUST00000157342 Gm25391 snoRNA Interval_101478 chr2 181686123 181686313 + 0 NA TTS (ENSMUSG00000059540.15) protein_coding-TTS (ENSMUSG00000059540.15) 2643 ENSMUSG00000059540.15 ENSMUSG00000059540 ENSMUST00000126844 Tcea2 protein_coding Interval_92208 chr2 56454661 56455183 + 0 NA Intergenic Intergenic -330889 ENSMUSG00000098437.1 ENSMUSG00000098437 ENSMUST00000184814 Mir195b miRNA Interval_57295 chr15 8579236 8579700 + 0 NA Intergenic Intergenic -49877 ENSMUSG00000115577.1 ENSMUSG00000115577 ENSMUST00000228699 Gm49250 processed_pseudogene Interval_162400 chr8 128025449 128025849 + 0 NA Intergenic Intergenic 252576 ENSMUSG00000099326.1 ENSMUSG00000099326 ENSMUST00000184910 Mir21c miRNA Interval_35518 chr12 24226141 24227866 + 0 NA Intergenic Intergenic 25178 ENSMUSG00000112975.1 ENSMUSG00000112975 ENSMUST00000169148 Gm21297 processed_pseudogene Interval_1076 chr1 15083205 15084486 + 0 NA Intergenic Intergenic -64686 ENSMUSG00000088159.1 ENSMUSG00000088159 ENSMUST00000157534 Gm26345 snoRNA Interval_116664 chr4 116506905 116508371 + 0 NA promoter-TSS (ENSMUSG00000028696.12) protein_coding-promoter-TSS (ENSMUSG00000028696.12) 89 ENSMUSG00000028696.12 ENSMUSG00000028696 ENSMUST00000030461 Ipp protein_coding Interval_103667 chr3 51475859 51476086 + 0 NA TTS (ENSMUSG00000063273.11) protein_coding-TTS (ENSMUSG00000063273.11) -7948 ENSMUSG00000027739.9 ENSMUSG00000027739 ENSMUST00000054387 Rab33b protein_coding Interval_87929 chr19 57162431 57162651 + 0 NA intron (ENSMUSG00000025085.16, intron 2 of 20) protein_coding-intron (ENSMUSG00000025085.16, intron 2 of 25) -111419 ENSMUSG00000117684.1 ENSMUSG00000117684 ENSMUST00000237596 4930449E18Rik antisense Interval_56262 chr14 115240515 115240734 + 0 NA intron (ENSMUSG00000022112.14, intron 2 of 7) protein_coding-intron (ENSMUSG00000022112.14, intron 2 of 7) 148409 ENSMUSG00000022112.14 ENSMUSG00000022112 ENSMUST00000022707 Gpc5 protein_coding Interval_149784 chr7 101450285 101451807 + 0 NA promoter-TSS (ENSMUSG00000110195.1) protein_coding-promoter-TSS (ENSMUSG00000110195.1) -24330 ENSMUSG00000065446.1 ENSMUSG00000065446 ENSMUST00000083512 Mir139 miRNA Interval_114697 chr4 83937936 83938176 + 0 NA Intergenic Intergenic -49198 ENSMUSG00000085378.1 ENSMUSG00000085378 ENSMUST00000128214 Gm11415 lincRNA Interval_174651 chrX 162214674 162214961 + 0 NA Intergenic Intergenic -22282 ENSMUSG00000098436.1 ENSMUSG00000098436 ENSMUST00000184754 Gm27490 rRNA Interval_41020 chr12 110649887 110650256 + 0 NA intron (ENSMUSG00000018707.13, intron 48 of 76) protein_coding-intron (ENSMUSG00000018707.13, intron 48 of 76) 9547 ENSMUSG00000018707.13 ENSMUSG00000018707 ENSMUST00000166323 Dync1h1 protein_coding Interval_159567 chr8 95495319 95496845 + 0 NA promoter-TSS (ENSMUSG00000110427.1) lincRNA-promoter-TSS (ENSMUSG00000110427.1) -365 ENSMUSG00000110427.1 ENSMUSG00000110427 ENSMUST00000212927 4933406B17Rik lincRNA Interval_50506 chr14 14345506 14347729 + 0 NA promoter-TSS (ENSMUSG00000068758.8) protein_coding-promoter-TSS (ENSMUSG00000068758.8) 187 ENSMUSG00000068758.8 ENSMUSG00000068758 ENSMUST00000224415 Il3ra protein_coding Interval_9962 chr1 164413369 164413568 + 0 NA intron (ENSMUSG00000026575.15, intron 14 of 15) protein_coding-intron (ENSMUSG00000026575.15, intron 12 of 12) -11245 ENSMUSG00000103493.1 ENSMUSG00000103493 ENSMUST00000194180 Gm37411 TEC Interval_166100 chr9 56606047 56608553 + 0 NA intron (ENSMUSG00000097870.2, intron 1 of 2) lincRNA-intron (ENSMUSG00000097870.2, intron 1 of 2) 607 ENSMUSG00000097870.2 ENSMUSG00000097870 ENSMUST00000181927 Gm26868 lincRNA Interval_21108 chr10 126529768 126530314 + 0 NA Intergenic Intergenic 56763 ENSMUSG00000112435.1 ENSMUSG00000112435 ENSMUST00000220216 Gm47965 processed_pseudogene Interval_47693 chr13 91370061 91371479 + 0 NA exon (ENSMUSG00000097182.2, exon 3 of 3) lincRNA-exon (ENSMUSG00000097182.2, exon 3 of 3) 3524 ENSMUSG00000099340.1 ENSMUSG00000099340 ENSMUST00000188207 Gm29540 sense_intronic Interval_133677 chr6 8467352 8468361 + 0 NA intron (ENSMUSG00000107705.1, intron 4 of 10) protein_coding-intron (ENSMUSG00000107705.1, intron 4 of 10) -24401 ENSMUSG00000090151.1 ENSMUSG00000090151 ENSMUST00000160030 Gm16043 antisense Interval_145689 chr7 37421849 37422177 + 0 NA intron (ENSMUSG00000043456.17, intron 3 of 3) protein_coding-intron (ENSMUSG00000043456.17, intron 3 of 3) 45409 ENSMUSG00000108790.1 ENSMUSG00000108790 ENSMUST00000205574 Gm44806 TEC Interval_91524 chr2 40910501 40911327 + 0 NA intron (ENSMUSG00000049252.17, intron 44 of 62) protein_coding-intron (ENSMUSG00000049252.17, intron 47 of 90) -47477 ENSMUSG00000082930.1 ENSMUSG00000082930 ENSMUST00000121472 Gm13462 processed_pseudogene Interval_122765 chr5 25222662 25223231 + 0 NA promoter-TSS (ENSMUSG00000038072.14) protein_coding-promoter-TSS (ENSMUSG00000038072.14) 207 ENSMUSG00000054116.1 ENSMUSG00000054116 ENSMUST00000066954 E130116L18Rik protein_coding Interval_171440 chr9 118367587 118367834 + 0 NA Intergenic Intergenic 35592 ENSMUSG00000103968.1 ENSMUSG00000103968 ENSMUST00000193035 2610509F24Rik TEC Interval_26166 chr11 54844289 54846613 + 0 NA intron (ENSMUSG00000020268.14, intron 4 of 7) protein_coding-intron (ENSMUSG00000020268.14, intron 3 of 3) 15465 ENSMUSG00000020268.14 ENSMUSG00000020268 ENSMUST00000135853 Lyrm7 protein_coding Interval_11802 chr1 185533291 185534360 + 0 NA Intergenic Intergenic 46531 ENSMUSG00000102185.1 ENSMUSG00000102185 ENSMUST00000192616 5033404E19Rik transcribed_processed_pseudogene Interval_70622 chr17 12415110 12416628 + 0 NA intron (ENSMUSG00000059481.5, intron 17 of 18) protein_coding-intron (ENSMUSG00000059481.5, intron 17 of 18) 37210 ENSMUSG00000059481.5 ENSMUSG00000059481 ENSMUST00000232767 Plg protein_coding Interval_153692 chr8 4636669 4637452 + 0 NA Intergenic Intergenic -4406 ENSMUSG00000109489.1 ENSMUSG00000109489 ENSMUST00000208382 Gm7451 processed_pseudogene Interval_4517 chr1 74759892 74760210 + 0 NA Intergenic Intergenic -4747 ENSMUSG00000098351.1 ENSMUSG00000098351 ENSMUST00000184199 Gm27507 misc_RNA Interval_13066 chr10 11025915 11026650 + 0 NA intron (ENSMUSG00000019828.13, intron 2 of 9) protein_coding-intron (ENSMUSG00000019828.13, intron 2 of 8) -9634 ENSMUSG00000111921.1 ENSMUSG00000111921 ENSMUST00000218933 Gm48406 processed_pseudogene Interval_29786 chr11 86788088 86788300 + 0 NA intron (ENSMUSG00000018425.18, intron 5 of 8) protein_coding-intron (ENSMUSG00000018425.18, intron 10 of 17) 12894 ENSMUSG00000018425.18 ENSMUSG00000018425 ENSMUST00000131798 Dhx40 protein_coding Interval_157363 chr8 69880918 69883479 + 0 NA exon (ENSMUSG00000044006.8, exon 8 of 8) protein_coding-exon (ENSMUSG00000044006.8, exon 8 of 8) 5489 ENSMUSG00000044006.8 ENSMUSG00000044006 ENSMUST00000057831 Cilp2 protein_coding Interval_93609 chr2 74865016 74865295 + 0 NA intron (ENSMUSG00000027099.9, intron 4 of 5) protein_coding-intron (ENSMUSG00000027099.9, intron 4 of 9) 9449 ENSMUSG00000081156.1 ENSMUSG00000081156 ENSMUST00000121240 Gm14425 transcribed_processed_pseudogene Interval_93079 chr2 69970246 69970909 + 0 NA intron (ENSMUSG00000044308.17, intron 21 of 38) protein_coding-intron (ENSMUSG00000044308.17, intron 21 of 38) -18209 ENSMUSG00000044308.17 ENSMUSG00000044308 ENSMUST00000123890 Ubr3 protein_coding Interval_13369 chr10 17331874 17332226 + 0 NA intron (ENSMUSG00000111922.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000111922.1, intron 1 of 2) 827 ENSMUSG00000111922.1 ENSMUSG00000111922 ENSMUST00000220296 Gm47760 lincRNA Interval_39456 chr12 87556507 87556935 + 0 NA Intergenic Intergenic -13470 ENSMUSG00000113803.1 ENSMUSG00000113803 ENSMUST00000222919 Gm18615 processed_pseudogene Interval_65019 chr16 18498181 18499358 + 0 NA promoter-TSS (ENSMUSG00000000884.17) protein_coding-promoter-TSS (ENSMUSG00000000884.17) -132 ENSMUSG00000086965.1 ENSMUSG00000086965 ENSMUST00000146673 Rtl10 protein_coding Interval_139193 chr6 97068883 97069259 + 0 NA Intergenic Intergenic -8678 ENSMUSG00000046500.8 ENSMUSG00000046500 ENSMUST00000203930 Tafa4 protein_coding Interval_95770 chr2 116019309 116021578 + 0 NA intron (ENSMUSG00000027210.20, intron 2 of 3) protein_coding-intron (ENSMUSG00000027210.20, intron 7 of 11) 47001 ENSMUSG00000086328.1 ENSMUSG00000086328 ENSMUST00000140185 2700033N17Rik lincRNA Interval_173401 chrX 88657758 88658009 + 0 NA Intergenic Intergenic 27138 ENSMUSG00000084355.1 ENSMUSG00000084355 ENSMUST00000119725 Gm14792 processed_pseudogene Interval_142517 chr6 143020675 143021878 + 0 NA exon (ENSMUSG00000030279.15, exon 1 of 1) protein_coding-intron (ENSMUSG00000030279.15, intron 21 of 24) 31666 ENSMUSG00000107839.1 ENSMUSG00000107839 ENSMUST00000203259 4930434O05Rik lincRNA Interval_90404 chr2 30198026 30198316 + 0 NA exon (ENSMUSG00000039648.14, exon 1 of 13) protein_coding-exon (ENSMUSG00000039648.14, exon 1 of 13) 7618 ENSMUSG00000039648.14 ENSMUSG00000039648 ENSMUST00000149522 Kyat1 protein_coding Interval_84774 chr19 16491045 16492500 + 0 NA promoter-TSS (ENSMUSG00000117699.1) processed_pseudogene-promoter-TSS (ENSMUSG00000117699.1) -708 ENSMUSG00000117699.1 ENSMUSG00000117699 ENSMUST00000236751 Gm8222 processed_pseudogene Interval_160900 chr8 114799380 114800194 + 0 NA intron (ENSMUSG00000004637.15, intron 8 of 8) protein_coding-intron (ENSMUSG00000004637.15, intron 8 of 8) 87620 ENSMUSG00000004637.15 ENSMUSG00000004637 ENSMUST00000162052 Wwox protein_coding Interval_153886 chr8 10701467 10701707 + 0 NA Intergenic Intergenic 11421 ENSMUSG00000109432.1 ENSMUSG00000109432 ENSMUST00000208294 Gm44785 lincRNA Interval_6226 chr1 103000048 103001332 + 0 NA Intergenic Intergenic -47142 ENSMUSG00000087908.1 ENSMUSG00000087908 ENSMUST00000157283 Gm22034 snoRNA Interval_101823 chr3 9715729 9716224 + 0 NA intron (ENSMUSG00000027508.15, intron 3 of 8) protein_coding-intron (ENSMUSG00000027508.15, intron 2 of 7) -41631 ENSMUSG00000089794.1 ENSMUSG00000089794 ENSMUST00000160368 Gm16337 lincRNA Interval_103478 chr3 42915408 42915633 + 0 NA Intergenic Intergenic -329921 ENSMUSG00000104294.1 ENSMUSG00000104294 ENSMUST00000192964 Gm38044 processed_pseudogene Interval_147193 chr7 64299689 64300574 + 0 NA promoter-TSS (ENSMUSG00000030522.14) protein_coding-promoter-TSS (ENSMUSG00000030522.14) -11921 ENSMUSG00000108472.1 ENSMUSG00000108472 ENSMUST00000205831 Gm45212 TEC Interval_57874 chr15 24224285 24224742 + 0 NA Intergenic Intergenic -18943 ENSMUSG00000115528.1 ENSMUSG00000115528 ENSMUST00000228146 Gm8408 processed_pseudogene Interval_149989 chr7 104235626 104235958 + 0 NA TTS (ENSMUSG00000072244.11) protein_coding-TTS (ENSMUSG00000072244.11) -8665 ENSMUSG00000056144.14 ENSMUSG00000056144 ENSMUST00000106848 Trim34a protein_coding Interval_33650 chr11 117743307 117744045 + 0 NA intron (ENSMUSG00000025571.13, intron 12 of 20) protein_coding-intron (ENSMUSG00000025571.13, intron 12 of 21) -5555 ENSMUSG00000025571.13 ENSMUSG00000025571 ENSMUST00000141287 Tnrc6c protein_coding Interval_48374 chr13 98596821 98597117 + 0 NA Intergenic Intergenic -16532 ENSMUSG00000114733.1 ENSMUSG00000114733 ENSMUST00000223936 Gm4815 processed_pseudogene Interval_131915 chr5 140761612 140762068 + 0 NA TTS (ENSMUSG00000050022.16) protein_coding-TTS (ENSMUSG00000050022.16) 37702 ENSMUSG00000050022.16 ENSMUSG00000050022 ENSMUST00000176035 Amz1 protein_coding Interval_80159 chr18 37932526 37933312 + 0 NA intron (ENSMUSG00000024456.16, intron 1 of 28) protein_coding-intron (ENSMUSG00000024456.16, intron 1 of 27) 13101 ENSMUSG00000117686.1 ENSMUSG00000117686 ENSMUST00000236273 Gm50122 processed_pseudogene Interval_134331 chr6 25302369 25302585 + 0 NA Intergenic Intergenic -102426 ENSMUSG00000089442.1 ENSMUSG00000089442 ENSMUST00000158817 Gm22529 snoRNA Interval_57994 chr15 25902856 25903847 + 0 NA intron (ENSMUSG00000022270.16, intron 3 of 8) protein_coding-intron (ENSMUSG00000022270.16, intron 3 of 8) -7073 ENSMUSG00000022270.16 ENSMUSG00000022270 ENSMUST00000228306 Retreg1 protein_coding Interval_173295 chrX 77443696 77444268 + 0 NA Intergenic Intergenic -12604 ENSMUSG00000081622.1 ENSMUSG00000081622 ENSMUST00000119715 Gm5937 processed_pseudogene Interval_147324 chr7 65848127 65849678 + 0 NA Intergenic Intergenic 13090 ENSMUSG00000093405.1 ENSMUSG00000093405 ENSMUST00000176744 Gm20684 bidirectional_promoter_lncRNA Interval_22064 chr11 6096155 6096788 + 0 NA Intergenic Intergenic 76565 ENSMUSG00000083022.1 ENSMUSG00000083022 ENSMUST00000117476 Rps15a-ps6 processed_pseudogene Interval_141950 chr6 135774669 135775184 + 0 NA intron (ENSMUSG00000030209.14, intron 9 of 14) protein_coding-intron (ENSMUSG00000030209.14, intron 8 of 13) 33929 ENSMUSG00000089263.1 ENSMUSG00000089263 ENSMUST00000158638 Gm22892 miRNA Interval_73311 chr17 36128996 36132184 + 0 NA TTS (ENSMUSG00000092277.1) protein_coding-TTS (ENSMUSG00000092277.1) -1165 ENSMUSG00000092243.8 ENSMUSG00000092243 ENSMUST00000172968 Gm7030 protein_coding Interval_133424 chr6 4957634 4958116 + 0 NA intron (ENSMUSG00000032827.15, intron 1 of 17) protein_coding-intron (ENSMUSG00000032827.15, intron 2 of 15) -1108 ENSMUSG00000097396.1 ENSMUSG00000097396 ENSMUST00000180645 Gm26556 TEC Interval_103023 chr3 34575660 34576700 + 0 NA intron (ENSMUSG00000105265.4, intron 2 of 4) processed_transcript-intron (ENSMUSG00000105265.4, intron 3 of 4) -3978 ENSMUSG00000106525.1 ENSMUSG00000106525 ENSMUST00000199445 Gm42695 lincRNA Interval_134721 chr6 30896132 30897173 + 0 NA promoter-TSS (ENSMUSG00000025607.15) protein_coding-promoter-TSS (ENSMUSG00000025607.15) 142 ENSMUSG00000025607.15 ENSMUSG00000025607 ENSMUST00000134137 Copg2 protein_coding Interval_136262 chr6 52372342 52372566 + 0 NA Intergenic Intergenic -14630 ENSMUSG00000084282.1 ENSMUSG00000084282 ENSMUST00000117393 Gm15054 processed_pseudogene Interval_106434 chr3 96180666 96181998 + 0 NA intron (ENSMUSG00000038486.9, intron 1 of 12) protein_coding-intron (ENSMUSG00000038486.9, intron 1 of 12) 4971 ENSMUSG00000084686.1 ENSMUSG00000084686 ENSMUST00000122737 Gm22027 snoRNA Interval_95783 chr2 116154948 116155169 + 0 NA Intergenic Intergenic -78962 ENSMUSG00000103562.1 ENSMUSG00000103562 ENSMUST00000195368 2810405F15Rik TEC Interval_21404 chr10 128388870 128390567 + 0 NA TTS (ENSMUSG00000106600.1) miRNA-TTS (ENSMUSG00000106600.1) 886 ENSMUSG00000106600.1 ENSMUSG00000106600 ENSMUST00000198839 Mir6915 miRNA Interval_90997 chr2 34025517 34027950 + 0 NA intron (ENSMUSG00000087461.2, intron 2 of 3) lincRNA-intron (ENSMUSG00000087461.2, intron 2 of 3) 48487 ENSMUSG00000086904.1 ENSMUSG00000086904 ENSMUST00000156633 Gm13404 lincRNA Interval_123964 chr5 36895884 36896647 + 0 NA intron (ENSMUSG00000029120.10, intron 1 of 3) protein_coding-intron (ENSMUSG00000029120.10, intron 1 of 8) -13849 ENSMUSG00000106934.1 ENSMUSG00000106934 ENSMUST00000202009 Gm42506 TEC Interval_160504 chr8 110101195 110102473 + 0 NA intron (ENSMUSG00000095941.3, intron 1 of 9) protein_coding-intron (ENSMUSG00000091041.1, intron 1 of 1) 919 ENSMUSG00000091041.1 ENSMUSG00000091041 ENSMUST00000165700 Gm17720 protein_coding Interval_18916 chr10 93105261 93105690 + 0 NA Intergenic Intergenic 20224 ENSMUSG00000111013.1 ENSMUSG00000111013 ENSMUST00000214288 Gm32468 lincRNA Interval_107117 chr3 103688792 103689384 + 0 NA Intergenic Intergenic -5710 ENSMUSG00000081910.1 ENSMUSG00000081910 ENSMUST00000122153 Gm15986 processed_pseudogene Interval_75240 chr17 65189266 65189551 + 0 NA Intergenic Intergenic -20205 ENSMUSG00000117336.1 ENSMUSG00000117336 ENSMUST00000233948 Gm49865 processed_pseudogene Interval_127910 chr5 108880163 108880986 + 0 NA intron (ENSMUSG00000093510.1, intron 2 of 4) antisense-intron (ENSMUSG00000093479.1, intron 1 of 3) 11806 ENSMUSG00000093510.1 ENSMUSG00000093510 ENSMUST00000177115 Vmn2r-ps21 unprocessed_pseudogene Interval_41738 chr12 118553615 118553805 + 0 NA Intergenic Intergenic -23517 ENSMUSG00000113875.1 ENSMUSG00000113875 ENSMUST00000222459 D230030E09Rik lincRNA Interval_87109 chr19 46172729 46173548 + 0 NA TTS (ENSMUSG00000025224.16) protein_coding-TTS (ENSMUSG00000025224.16) 20558 ENSMUSG00000025224.16 ENSMUSG00000025224 ENSMUST00000176046 Gbf1 protein_coding Interval_112646 chr4 43763374 43763760 + 0 NA Intergenic Intergenic 4210 ENSMUSG00000083417.1 ENSMUSG00000083417 ENSMUST00000120783 Olfr269-ps1 unprocessed_pseudogene Interval_46481 chr13 66472026 66473382 + 0 NA Intergenic Intergenic -17350 ENSMUSG00000114343.1 ENSMUSG00000114343 ENSMUST00000225113 Gm48322 processed_pseudogene Interval_75608 chr17 69265961 69266918 + 0 NA TTS (ENSMUSG00000024044.19) protein_coding-TTS (ENSMUSG00000024044.19) 10769 ENSMUSG00000100572.1 ENSMUSG00000100572 ENSMUST00000187090 2410021H03Rik antisense Interval_37413 chr12 67749583 67750340 + 0 NA Intergenic Intergenic 72435 ENSMUSG00000114128.1 ENSMUSG00000114128 ENSMUST00000222060 Gm47452 processed_pseudogene Interval_149283 chr7 96920609 96921072 + 0 NA promoter-TSS (ENSMUSG00000087980.1) snRNA-promoter-TSS (ENSMUSG00000087980.1) -738 ENSMUSG00000087980.1 ENSMUSG00000087980 ENSMUST00000157355 Gm22226 snRNA Interval_55024 chr14 77139870 77140081 + 0 NA Intergenic Intergenic 103111 ENSMUSG00000034795.14 ENSMUSG00000034795 ENSMUST00000137110 Ccdc122 protein_coding Interval_12500 chr1 194472413 194473804 + 0 NA Intergenic Intergenic -145110 ENSMUSG00000026640.12 ENSMUSG00000026640 ENSMUST00000124785 Plxna2 protein_coding Interval_133791 chr6 12249896 12250370 + 0 NA Intergenic Intergenic 121507 ENSMUSG00000108209.1 ENSMUSG00000108209 ENSMUST00000203296 Gm32222 processed_pseudogene Interval_22061 chr11 6067108 6068791 + 0 NA Intergenic Intergenic -83811 ENSMUSG00000057897.14 ENSMUSG00000057897 ENSMUST00000129098 Camk2b protein_coding Interval_46974 chr13 73871944 73872825 + 0 NA Intergenic Intergenic -24772 ENSMUSG00000021567.15 ENSMUSG00000021567 ENSMUST00000221679 Nkd2 protein_coding Interval_11596 chr1 183112974 183113218 + 0 NA intron (ENSMUSG00000030768.12, intron 3 of 8) protein_coding-intron (ENSMUSG00000030768.12, intron 4 of 9) 38490 ENSMUSG00000094807.2 ENSMUSG00000094807 ENSMUST00000178492 Gm24975 miRNA Interval_10526 chr1 171476873 171479214 + 0 NA Intergenic Intergenic 15193 ENSMUSG00000038235.4 ENSMUSG00000038235 ENSMUST00000155913 F11r protein_coding Interval_110140 chr3 153667889 153669102 + 0 NA intron (ENSMUSG00000052544.9, intron 1 of 4) protein_coding-intron (ENSMUSG00000052544.9, intron 1 of 2) -40416 ENSMUSG00000089237.1 ENSMUSG00000089237 ENSMUST00000158612 Gm22206 snoRNA Interval_125302 chr5 66062609 66063232 + 0 NA intron (ENSMUSG00000070780.11, intron 2 of 3) protein_coding-intron (ENSMUSG00000070780.11, intron 2 of 5) 9975 ENSMUSG00000107304.1 ENSMUSG00000107304 ENSMUST00000201019 Gm43775 TEC Interval_108467 chr3 127463336 127464446 + 0 NA intron (ENSMUSG00000032826.19, intron 1 of 1) protein_coding-intron (ENSMUSG00000032826.19, intron 1 of 1) -17229 ENSMUSG00000105116.1 ENSMUSG00000105116 ENSMUST00000196760 Gm44494 miRNA Interval_153534 chr8 3247676 3247861 + 0 NA intron (ENSMUSG00000005534.10, intron 2 of 2) protein_coding-intron (ENSMUSG00000005534.10, intron 2 of 20) -11936 ENSMUSG00000086065.1 ENSMUSG00000086065 ENSMUST00000128662 Gm16180 antisense Interval_173751 chrX 103452849 103454234 + 0 NA intron (ENSMUSG00000085715.2, intron 1 of 1) antisense-intron (ENSMUSG00000085715.2, intron 3 of 3) 5819 ENSMUSG00000085715.2 ENSMUSG00000085715 ENSMUST00000211291 Tsix antisense Interval_118588 chr4 132645614 132646232 + 0 NA intron (ENSMUSG00000028886.15, intron 1 of 15) protein_coding-intron (ENSMUSG00000028886.15, intron 1 of 14) 6877 ENSMUSG00000028886.15 ENSMUSG00000028886 ENSMUST00000130833 Eya3 protein_coding Interval_74471 chr17 51362110 51362592 + 0 NA Intergenic Intergenic 73487 ENSMUSG00000117204.1 ENSMUSG00000117204 ENSMUST00000233466 C330011F03Rik lincRNA Interval_32040 chr11 104646168 104647238 + 0 NA intron (ENSMUSG00000020689.4, intron 6 of 10) protein_coding-intron (ENSMUSG00000020689.4, intron 10 of 14) 9314 ENSMUSG00000020689.4 ENSMUSG00000020689 ENSMUST00000127140 Itgb3 protein_coding Interval_71892 chr17 26838765 26839885 + 0 NA exon (ENSMUSG00000015579.5, exon 2 of 2) protein_coding-exon (ENSMUSG00000015579.5, exon 2 of 2) 5684 ENSMUSG00000015579.5 ENSMUSG00000015579 ENSMUST00000235454 Nkx2-5 protein_coding Interval_4233 chr1 71952894 71953504 + 0 NA Intergenic Intergenic -51089 ENSMUSG00000059483.5 ENSMUSG00000059483 ENSMUST00000076314 Gm5528 processed_pseudogene Interval_28809 chr11 78463076 78464481 + 0 NA Intergenic Intergenic -6448 ENSMUSG00000020829.9 ENSMUSG00000020829 ENSMUST00000180786 Slc46a1 protein_coding Interval_67878 chr16 58531967 58533041 + 0 NA Intergenic Intergenic -18320 ENSMUSG00000022747.17 ENSMUSG00000022747 ENSMUST00000232391 St3gal6 protein_coding Interval_56815 chr14 122249076 122249826 + 0 NA intron (ENSMUSG00000025545.10, intron 1 of 7) protein_coding-intron (ENSMUSG00000025545.10, intron 1 of 7) -8590 ENSMUSG00000025545.10 ENSMUSG00000025545 ENSMUST00000226136 Clybl protein_coding Interval_14818 chr10 40266980 40268073 + 0 NA Intergenic Intergenic 6592 ENSMUSG00000111665.1 ENSMUSG00000111665 ENSMUST00000217206 A930033M14Rik lincRNA Interval_86101 chr19 36642827 36643441 + 0 NA TTS (ENSMUSG00000087579.7) antisense-TTS (ENSMUSG00000087579.7) 15450 ENSMUSG00000087579.7 ENSMUSG00000087579 ENSMUST00000128603 Hectd2os antisense Interval_140011 chr6 113395662 113397231 + 0 NA intron (ENSMUSG00000030276.19, intron 4 of 5) protein_coding-intron (ENSMUSG00000030276.19, intron 4 of 12) 3269 ENSMUSG00000030276.19 ENSMUSG00000030276 ENSMUST00000203880 Ttll3 protein_coding Interval_163836 chr9 27029070 27030959 + 0 NA promoter-TSS (ENSMUSG00000031988.10) protein_coding-promoter-TSS (ENSMUSG00000031988.10) 16 ENSMUSG00000031988.10 ENSMUSG00000031988 ENSMUST00000213917 Vps26b protein_coding Interval_23491 chr11 22917556 22918641 + 0 NA intron (ENSMUSG00000051355.18, intron 1 of 1) protein_coding-intron (ENSMUSG00000051355.18, intron 3 of 3) 49197 ENSMUSG00000065869.1 ENSMUSG00000065869 ENSMUST00000083935 Gm24917 snRNA Interval_142242 chr6 139744741 139745042 + 0 NA intron (ENSMUSG00000030228.18, intron 2 of 20) protein_coding-intron (ENSMUSG00000030228.18, intron 5 of 23) 7996 ENSMUSG00000030228.18 ENSMUSG00000030228 ENSMUST00000191591 Pik3c2g protein_coding Interval_151507 chr7 123148039 123148535 + 0 NA intron (ENSMUSG00000052707.8, intron 3 of 3) protein_coding-intron (ENSMUSG00000052707.8, intron 3 of 23) -23359 ENSMUSG00000052707.8 ENSMUSG00000052707 ENSMUST00000206126 Tnrc6a protein_coding Interval_123206 chr5 30621816 30623079 + 0 NA TTS (ENSMUSG00000049265.7) protein_coding-TTS (ENSMUSG00000049265.7) 1074 ENSMUSG00000049265.7 ENSMUSG00000049265 ENSMUST00000197428 Kcnk3 protein_coding Interval_4810 chr1 79602552 79602863 + 0 NA Intergenic Intergenic 18327 ENSMUSG00000102235.1 ENSMUSG00000102235 ENSMUST00000195349 Gm37886 TEC Interval_143407 chr7 6446331 6446799 + 0 NA promoter-TSS (ENSMUSG00000110323.1) unprocessed_pseudogene-promoter-TSS (ENSMUSG00000110323.1) -309 ENSMUSG00000110323.1 ENSMUSG00000110323 ENSMUST00000210627 Olfr1345-ps1 unprocessed_pseudogene Interval_19491 chr10 100200500 100200791 + 0 NA Intergenic Intergenic 3697 ENSMUSG00000112633.1 ENSMUSG00000112633 ENSMUST00000220057 Gm47627 TEC Interval_115083 chr4 89427758 89428127 + 0 NA intron (ENSMUSG00000086035.1, intron 1 of 3) processed_transcript-intron (ENSMUSG00000086035.1, intron 1 of 3) 6094 ENSMUSG00000086035.1 ENSMUSG00000086035 ENSMUST00000139272 Gm12610 processed_transcript Interval_56455 chr14 118887608 118887800 + 0 NA intron (ENSMUSG00000042156.16, intron 1 of 3) protein_coding-intron (ENSMUSG00000042156.16, intron 15 of 21) 1959 ENSMUSG00000042156.16 ENSMUSG00000042156 ENSMUST00000226919 Dzip1 protein_coding Interval_161282 chr8 119478401 119480062 + 0 NA TTS (ENSMUSG00000034224.14) protein_coding-TTS (ENSMUSG00000034224.14) 22063 ENSMUSG00000034224.14 ENSMUSG00000034224 ENSMUST00000133821 Slc38a8 protein_coding Interval_170150 chr9 105590516 105592034 + 0 NA Intergenic Intergenic -30514 ENSMUSG00000101597.2 ENSMUSG00000101597 ENSMUST00000187303 Gm5621 processed_pseudogene Interval_19360 chr10 97885358 97885555 + 0 NA intron (ENSMUSG00000074776.4, intron 2 of 4) lincRNA-intron (ENSMUSG00000074776.4, intron 2 of 4) 81634 ENSMUSG00000074776.4 ENSMUSG00000074776 ENSMUST00000099324 Gm10754 lincRNA Interval_116284 chr4 109279928 109281236 + 0 NA intron (ENSMUSG00000028552.13, intron 1 of 5) protein_coding-intron (ENSMUSG00000028552.13, intron 1 of 24) 36000 ENSMUSG00000028558.14 ENSMUSG00000028558 ENSMUST00000141555 Calr4 protein_coding Interval_107460 chr3 107863873 107864380 + 0 NA Intergenic Intergenic 4517 ENSMUSG00000105944.1 ENSMUSG00000105944 ENSMUST00000196916 Gm5075 processed_pseudogene Interval_128348 chr5 112663539 112664236 + 0 NA Intergenic Intergenic -11488 ENSMUSG00000104807.1 ENSMUSG00000104807 ENSMUST00000197981 Gm42865 lincRNA Interval_169811 chr9 102061131 102061511 + 0 NA intron (ENSMUSG00000032537.15, intron 4 of 4) protein_coding-intron (ENSMUSG00000032537.15, intron 4 of 15) -4764 ENSMUSG00000104041.1 ENSMUSG00000104041 ENSMUST00000194763 Gm37562 TEC Interval_157307 chr8 69175807 69177292 + 0 NA intron (ENSMUSG00000036306.13, intron 1 of 1) protein_coding-intron (ENSMUSG00000036306.13, intron 1 of 1) 5681 ENSMUSG00000036306.13 ENSMUSG00000036306 ENSMUST00000184961 Lzts1 protein_coding Interval_153993 chr8 11703960 11706277 + 0 NA Intergenic Intergenic -8146 ENSMUSG00000031510.5 ENSMUSG00000031510 ENSMUST00000134409 1700128E19Rik lincRNA Interval_133282 chr5 151102298 151102796 + 0 NA intron (ENSMUSG00000107011.1, intron 2 of 5) protein_coding-intron (ENSMUSG00000016128.14, intron 1 of 13) 6188 ENSMUSG00000016128.14 ENSMUSG00000016128 ENSMUST00000202866 Stard13 protein_coding Interval_126497 chr5 89172272 89173068 + 0 NA intron (ENSMUSG00000060961.16, intron 16 of 25) protein_coding-intron (ENSMUSG00000060961.16, intron 15 of 24) 262958 ENSMUSG00000035540.12 ENSMUSG00000035540 ENSMUST00000200534 Gc protein_coding Interval_50682 chr14 18184560 18184859 + 0 NA Intergenic Intergenic -4331 ENSMUSG00000114678.1 ENSMUSG00000114678 ENSMUST00000224869 Gm48481 processed_pseudogene Interval_22823 chr11 16364416 16364638 + 0 NA intron (ENSMUSG00000048834.16, intron 4 of 6) protein_coding-intron (ENSMUSG00000048834.16, intron 4 of 6) -74727 ENSMUSG00000083925.1 ENSMUSG00000083925 ENSMUST00000118857 Gm12012 processed_pseudogene Interval_89855 chr2 26020971 26022351 + 0 NA promoter-TSS (ENSMUSG00000036352.16) protein_coding-promoter-TSS (ENSMUSG00000036352.16) -12438 ENSMUSG00000036352.16 ENSMUSG00000036352 ENSMUST00000150608 Ubac1 protein_coding Interval_27094 chr11 62840431 62840730 + 0 NA exon (ENSMUSG00000047821.16, exon 6 of 6) protein_coding-exon (ENSMUSG00000047821.16, exon 6 of 6) -6543 ENSMUSG00000090173.8 ENSMUSG00000090173 ENSMUST00000127646 Fbxw10 protein_coding Interval_160211 chr8 107150083 107151326 + 0 NA promoter-TSS (ENSMUSG00000031924.4) protein_coding-promoter-TSS (ENSMUSG00000031924.4) -15211 ENSMUSG00000031924.4 ENSMUSG00000031924 ENSMUST00000212920 Cyb5b protein_coding Interval_8135 chr1 135933224 135935033 + 0 NA Intergenic Intergenic -14986 ENSMUSG00000026413.12 ENSMUSG00000026413 ENSMUST00000132793 Pkp1 protein_coding Interval_82480 chr18 74364743 74365005 + 0 NA Intergenic Intergenic 15888 ENSMUSG00000035394.11 ENSMUSG00000035394 ENSMUST00000177407 Cfap53 protein_coding Interval_140804 chr6 121480783 121481049 + 0 NA Intergenic Intergenic -7251 ENSMUSG00000040797.16 ENSMUSG00000040797 ENSMUST00000151397 Iqsec3 protein_coding Interval_85937 chr19 33594707 33595582 + 0 NA intron (ENSMUSG00000024766.15, intron 1 of 10) protein_coding-intron (ENSMUSG00000024766.15, intron 1 of 10) -2431 ENSMUSG00000098770.1 ENSMUSG00000098770 ENSMUST00000184785 Gm27440 miRNA Interval_67912 chr16 59471289 59472660 + 0 NA promoter-TSS (ENSMUSG00000022724.15) protein_coding-promoter-TSS (ENSMUSG00000022724.15) -94 ENSMUSG00000022724.15 ENSMUSG00000022724 ENSMUST00000131272 Riox2 protein_coding Interval_69639 chr16 94781988 94782499 + 0 NA intron (ENSMUSG00000043301.16, intron 3 of 3) protein_coding-intron (ENSMUSG00000043301.16, intron 3 of 4) 60349 ENSMUSG00000116641.1 ENSMUSG00000116641 ENSMUST00000232585 Gm41505 antisense Interval_125908 chr5 75623801 75624492 + 0 NA intron (ENSMUSG00000005672.12, intron 7 of 20) protein_coding-intron (ENSMUSG00000005672.12, intron 7 of 20) -24948 ENSMUSG00000005672.12 ENSMUSG00000005672 ENSMUST00000201240 Kit protein_coding Interval_102697 chr3 30304520 30305137 + 0 NA intron (ENSMUSG00000027684.16, intron 2 of 8) protein_coding-intron (ENSMUSG00000027684.16, intron 1 of 11) -30443 ENSMUSG00000103870.1 ENSMUSG00000103870 ENSMUST00000192999 Gm38362 TEC Interval_43474 chr13 31683235 31683891 + 0 NA Intergenic Intergenic 54177 ENSMUSG00000065843.1 ENSMUSG00000065843 ENSMUST00000083909 Gm25186 snRNA Interval_71089 chr17 17849798 17850683 + 0 NA exon (ENSMUSG00000003665.7, exon 2 of 5) protein_coding-exon (ENSMUSG00000003665.7, exon 2 of 5) 4965 ENSMUSG00000003665.7 ENSMUSG00000003665 ENSMUST00000232410 Has1 protein_coding Interval_92283 chr2 58163368 58163732 + 0 NA promoter-TSS (ENSMUSG00000086862.1) antisense-promoter-TSS (ENSMUSG00000086862.1) -451 ENSMUSG00000086862.1 ENSMUSG00000086862 ENSMUST00000135735 Gm13546 antisense Interval_34937 chr12 14149486 14150418 + 0 NA TTS (ENSMUSG00000020607.7) protein_coding-TTS (ENSMUSG00000020607.7) 1397 ENSMUSG00000020607.7 ENSMUSG00000020607 ENSMUST00000221405 Lratd1 protein_coding Interval_77863 chr18 4785439 4785851 + 0 NA Intergenic Intergenic -26841 ENSMUSG00000097043.1 ENSMUSG00000097043 ENSMUST00000180904 Gm10556 lincRNA Interval_35178 chr12 17812094 17812690 + 0 NA Intergenic Intergenic -69805 ENSMUSG00000113294.1 ENSMUSG00000113294 ENSMUST00000223226 Gm49326 unprocessed_pseudogene Interval_74423 chr17 50195815 50196703 + 0 NA Intergenic Intergenic -5762 ENSMUSG00000039316.14 ENSMUSG00000039316 ENSMUST00000156094 Rftn1 protein_coding Interval_131620 chr5 138849811 138851246 + 0 NA Intergenic Intergenic 30448 ENSMUSG00000094504.3 ENSMUSG00000094504 ENSMUST00000179205 Gm5294 protein_coding Interval_170131 chr9 105282456 105282992 + 0 NA intron (ENSMUSG00000035032.12, intron 10 of 13) protein_coding-intron (ENSMUSG00000035032.12, intron 12 of 15) -38350 ENSMUSG00000035032.12 ENSMUSG00000035032 ENSMUST00000140851 Nek11 protein_coding Interval_25969 chr11 53243226 53243865 + 0 NA Intergenic Intergenic 42861 ENSMUSG00000058073.4 ENSMUSG00000058073 ENSMUST00000117979 Gm11189 processed_pseudogene Interval_9788 chr1 162337932 162338650 + 0 NA intron (ENSMUSG00000040265.16, intron 4 of 5) protein_coding-intron (ENSMUSG00000040265.16, intron 4 of 19) 22199 ENSMUSG00000089933.1 ENSMUSG00000089933 ENSMUST00000160695 Gm16101 processed_pseudogene Interval_45583 chr13 56065682 56066804 + 0 NA intron (ENSMUSG00000114493.2, intron 5 of 5) antisense-intron (ENSMUSG00000114493.2, intron 2 of 2) -36009 ENSMUSG00000114229.1 ENSMUSG00000114229 ENSMUST00000225745 Gm47072 processed_pseudogene Interval_26483 chr11 58097246 58098591 + 0 NA promoter-TSS (ENSMUSG00000081223.1) processed_pseudogene-promoter-TSS (ENSMUSG00000081223.1) -145 ENSMUSG00000081223.1 ENSMUSG00000081223 ENSMUST00000117585 Gm12247 processed_pseudogene Interval_122988 chr5 28180172 28180593 + 0 NA Intergenic Intergenic -11542 ENSMUSG00000106160.1 ENSMUSG00000106160 ENSMUST00000199117 Gm43610 TEC Interval_35955 chr12 32819583 32821224 + 0 NA promoter-TSS (ENSMUSG00000020572.8) protein_coding-promoter-TSS (ENSMUSG00000020572.8) 858 ENSMUSG00000020572.8 ENSMUSG00000020572 ENSMUST00000218491 Nampt protein_coding Interval_120802 chr4 150721846 150722347 + 0 NA Intergenic Intergenic -43304 ENSMUSG00000085869.1 ENSMUSG00000085869 ENSMUST00000149065 Gm16079 lincRNA Interval_14489 chr10 34281722 34283135 + 0 NA exon (ENSMUSG00000047514.6, exon 1 of 1) protein_coding-exon (ENSMUSG00000047514.6, exon 1 of 1) 238 ENSMUSG00000047514.6 ENSMUSG00000047514 ENSMUST00000061372 Tspyl1 protein_coding Interval_75983 chr17 74159440 74160161 + 0 NA Intergenic Intergenic 4774 ENSMUSG00000117031.1 ENSMUSG00000117031 ENSMUST00000233609 Gm49882 processed_pseudogene Interval_71351 chr17 22551279 22551775 + 0 NA intron (ENSMUSG00000095093.2, intron 4 of 4) protein_coding-intron (ENSMUSG00000095093.2, intron 5 of 5) 21955 ENSMUSG00000095093.2 ENSMUSG00000095093 ENSMUST00000234027 Vmn2r111 protein_coding Interval_108029 chr3 120513472 120513652 + 0 NA Intergenic Intergenic 96531 ENSMUSG00000089027.1 ENSMUSG00000089027 ENSMUST00000158402 Gm25013 snoRNA Interval_40539 chr12 105580514 105581118 + 0 NA intron (ENSMUSG00000021070.6, intron 1 of 2) protein_coding-intron (ENSMUSG00000021070.6, intron 1 of 2) 17590 ENSMUSG00000021070.6 ENSMUSG00000021070 ENSMUST00000001652 Bdkrb2 protein_coding Interval_18948 chr10 93309192 93311774 + 0 NA intron (ENSMUSG00000008398.16, intron 1 of 3) protein_coding-intron (ENSMUSG00000008398.16, intron 1 of 4) 486 ENSMUSG00000008398.16 ENSMUSG00000008398 ENSMUST00000133365 Elk3 protein_coding Interval_55879 chr14 101757163 101757499 + 0 NA intron (ENSMUSG00000033060.16, intron 1 of 30) protein_coding-intron (ENSMUSG00000033060.16, intron 1 of 30) -27516 ENSMUSG00000053821.4 ENSMUSG00000053821 ENSMUST00000066461 Gm9922 bidirectional_promoter_lncRNA Interval_133801 chr6 12379064 12379269 + 0 NA intron (ENSMUSG00000032625.14, intron 13 of 27) protein_coding-intron (ENSMUSG00000032625.14, intron 13 of 27) -186352 ENSMUSG00000083794.1 ENSMUSG00000083794 ENSMUST00000118647 Gm16123 processed_pseudogene Interval_81459 chr18 60891364 60891990 + 0 NA Intergenic Intergenic -20103 ENSMUSG00000036412.5 ENSMUSG00000036412 ENSMUST00000040359 Arsi protein_coding Interval_103185 chr3 36464932 36466466 + 0 NA intron (ENSMUSG00000027712.13, intron 2 of 6) protein_coding-intron (ENSMUSG00000027712.13, intron 2 of 12) 9825 ENSMUSG00000098808.1 ENSMUSG00000098808 ENSMUST00000184519 Mir7009 miRNA Interval_76792 chr17 84083976 84084234 + 0 NA intron (ENSMUSG00000117571.1, intron 2 of 5) lincRNA-intron (ENSMUSG00000117571.1, intron 2 of 5) 5445 ENSMUSG00000117571.1 ENSMUSG00000117571 ENSMUST00000234076 4933433H22Rik lincRNA Interval_174847 chrX 169789417 169789872 + 0 NA intron (ENSMUSG00000035299.16, intron 1 of 9) protein_coding-intron (ENSMUSG00000035299.16, intron 1 of 9) -10087 ENSMUSG00000055357.8 ENSMUSG00000055357 ENSMUST00000112102 4933400A11Rik protein_coding Interval_166033 chr9 55629470 55629739 + 0 NA intron (ENSMUSG00000034007.10, intron 26 of 32) protein_coding-intron (ENSMUSG00000034007.10, intron 24 of 30) -73892 ENSMUSG00000064472.1 ENSMUSG00000064472 ENSMUST00000082538 Gm23407 snRNA Interval_88470 chr2 5405244 5405654 + 0 NA intron (ENSMUSG00000039145.16, intron 3 of 10) protein_coding-intron (ENSMUSG00000039145.16, intron 3 of 10) 121799 ENSMUSG00000080820.1 ENSMUSG00000080820 ENSMUST00000117204 Gm13197 processed_pseudogene Interval_100093 chr2 167038653 167038879 + 0 NA exon (ENSMUSG00000039501.14, exon 14 of 14) protein_coding-exon (ENSMUSG00000039501.14, exon 14 of 14) 21659 ENSMUSG00000039501.14 ENSMUSG00000039501 ENSMUST00000135967 Znfx1 protein_coding Interval_12077 chr1 189578379 189578605 + 0 NA Intergenic Intergenic 61742 ENSMUSG00000103087.1 ENSMUSG00000103087 ENSMUST00000192679 Gm38122 TEC Interval_14153 chr10 28138326 28139195 + 0 NA intron (ENSMUSG00000019889.10, intron 1 of 2) protein_coding-intron (ENSMUSG00000019889.10, intron 1 of 31) -72570 ENSMUSG00000112432.1 ENSMUSG00000112432 ENSMUST00000218855 Gm18507 processed_pseudogene Interval_38232 chr12 76541063 76542136 + 0 NA intron (ENSMUSG00000052609.9, intron 1 of 17) protein_coding-intron (ENSMUSG00000052609.9, intron 1 of 18) -5444 ENSMUSG00000052609.9 ENSMUSG00000052609 ENSMUST00000218427 Plekhg3 protein_coding Interval_104858 chr3 76060138 76060805 + 0 NA Intergenic Intergenic -18748 ENSMUSG00000104223.1 ENSMUSG00000104223 ENSMUST00000194986 Gm18428 processed_pseudogene Interval_144586 chr7 26548849 26549044 + 0 NA intron (ENSMUSG00000054102.15, intron 1 of 2) protein_coding-intron (ENSMUSG00000054102.15, intron 1 of 8) 13880 ENSMUSG00000054102.15 ENSMUSG00000054102 ENSMUST00000117252 Nlrp9a protein_coding Interval_108543 chr3 128347763 128348026 + 0 NA Intergenic Intergenic -66803 ENSMUSG00000106119.1 ENSMUSG00000106119 ENSMUST00000197882 Gm43656 processed_pseudogene Interval_101260 chr2 179931688 179932345 + 0 NA exon (ENSMUSG00000039117.16, exon 7 of 15) protein_coding-exon (ENSMUSG00000039117.16, exon 7 of 15) -43977 ENSMUSG00000085704.1 ENSMUSG00000085704 ENSMUST00000150145 4921531C22Rik processed_transcript Interval_48266 chr13 97523527 97525344 + 0 NA intron (ENSMUSG00000114415.1, intron 2 of 2) lincRNA-intron (ENSMUSG00000114415.1, intron 2 of 2) 3020 ENSMUSG00000114415.1 ENSMUSG00000114415 ENSMUST00000225416 Gm41030 lincRNA Interval_146248 chr7 44958015 44958445 + 0 NA TTS (ENSMUSG00000059891.14) protein_coding-TTS (ENSMUSG00000059891.14) 3916 ENSMUSG00000059891.14 ENSMUSG00000059891 ENSMUST00000208475 Tsks protein_coding Interval_13422 chr10 18090342 18091053 + 0 NA promoter-TSS (ENSMUSG00000019854.17) protein_coding-promoter-TSS (ENSMUSG00000019854.17) -13515 ENSMUSG00000019854.17 ENSMUSG00000019854 ENSMUST00000150533 Reps1 protein_coding Interval_174252 chrX 141898595 141899042 + 0 NA Intergenic Intergenic 3637 ENSMUSG00000086907.1 ENSMUSG00000086907 ENSMUST00000145916 Gm15298 lincRNA Interval_27997 chr11 72058654 72059207 + 0 NA exon (ENSMUSG00000040543.16, exon 15 of 20) protein_coding-exon (ENSMUSG00000040543.16, exon 15 of 20) 16406 ENSMUSG00000020808.3 ENSMUSG00000020808 ENSMUST00000125655 Pimreg protein_coding Interval_21229 chr10 127325958 127327763 + 0 NA exon (ENSMUSG00000040345.10, exon 6 of 12) protein_coding-exon (ENSMUSG00000040345.10, exon 6 of 12) 4896 ENSMUSG00000040345.10 ENSMUSG00000040345 ENSMUST00000218656 Arhgap9 protein_coding Interval_157085 chr8 65053242 65054632 + 0 NA Intergenic Intergenic -16601 ENSMUSG00000079042.10 ENSMUSG00000079042 ENSMUST00000124790 Apela protein_coding Interval_6158 chr1 98208526 98208776 + 0 NA Intergenic Intergenic 35003 ENSMUSG00000100711.1 ENSMUSG00000100711 ENSMUST00000189232 Gm29461 lincRNA Interval_131588 chr5 138400561 138400852 + 0 NA Intergenic Intergenic -9112 ENSMUSG00000112214.1 ENSMUSG00000112214 ENSMUST00000218470 Cyp3a61-ps1 unprocessed_pseudogene Interval_102087 chr3 16930055 16930647 + 0 NA Intergenic Intergenic -107039 ENSMUSG00000088644.1 ENSMUSG00000088644 ENSMUST00000158019 Gm26485 snRNA Interval_4913 chr1 82429054 82429341 + 0 NA intron (ENSMUSG00000026142.15, intron 6 of 6) protein_coding-intron (ENSMUSG00000026142.15, intron 6 of 6) -26451 ENSMUSG00000100786.1 ENSMUSG00000100786 ENSMUST00000187929 Gm28940 antisense Interval_49467 chr13 112259316 112259650 + 0 NA Intergenic Intergenic -28968 ENSMUSG00000049985.15 ENSMUSG00000049985 ENSMUST00000223871 Ankrd55 protein_coding Interval_76357 chr17 79421348 79422056 + 0 NA Intergenic Intergenic 67003 ENSMUSG00000118651.1 ENSMUSG00000118651 ENSMUST00000239444 CT030740.1 antisense Interval_114931 chr4 87159201 87159787 + 0 NA intron (ENSMUSG00000037996.17, intron 2 of 10) protein_coding-intron (ENSMUSG00000037996.17, intron 1 of 9) 70973 ENSMUSG00000037996.17 ENSMUSG00000037996 ENSMUST00000155361 Slc24a2 protein_coding Interval_113061 chr4 47345810 47346602 + 0 NA Intergenic Intergenic -7404 ENSMUSG00000007613.15 ENSMUSG00000007613 ENSMUST00000107725 Tgfbr1 protein_coding Interval_149279 chr7 96904921 96906522 + 0 NA intron (ENSMUSG00000048078.16, intron 32 of 32) protein_coding-intron (ENSMUSG00000048078.16, intron 32 of 32) 14381 ENSMUSG00000087980.1 ENSMUSG00000087980 ENSMUST00000157355 Gm22226 snRNA Interval_171266 chr9 115805332 115806884 + 0 NA Intergenic Intergenic 125365 ENSMUSG00000110905.1 ENSMUSG00000110905 ENSMUST00000215982 Gm48007 lincRNA Interval_159905 chr8 105061249 105061643 + 0 NA Intergenic Intergenic -9978 ENSMUSG00000110488.1 ENSMUSG00000110488 ENSMUST00000213031 Gm45724 TEC Interval_24803 chr11 38665541 38665912 + 0 NA Intergenic Intergenic 132551 ENSMUSG00000070249.1 ENSMUSG00000070249 ENSMUST00000093736 Gm23520 snRNA Interval_46580 chr13 67355112 67355585 + 0 NA intron (ENSMUSG00000098692.1, intron 4 of 5) protein_coding-intron (ENSMUSG00000098781.1, intron 1 of 5) 5257 ENSMUSG00000098905.2 ENSMUSG00000098905 ENSMUST00000081582 Zfp953 protein_coding Interval_70959 chr17 16837807 16838554 + 0 NA Intergenic Intergenic -9215 ENSMUSG00000116958.1 ENSMUSG00000116958 ENSMUST00000231260 Gm6705 processed_pseudogene Interval_95258 chr2 105298754 105299183 + 0 NA intron (ENSMUSG00000055312.2, intron 2 of 2) protein_coding-intron (ENSMUSG00000055312.2, intron 3 of 3) 74626 ENSMUSG00000055312.2 ENSMUSG00000055312 ENSMUST00000131060 Them7 protein_coding Interval_131925 chr5 140818803 140819270 + 0 NA intron (ENSMUSG00000000149.10, intron 1 of 2) protein_coding-intron (ENSMUSG00000000149.10, intron 1 of 3) 11121 ENSMUSG00000000149.10 ENSMUSG00000000149 ENSMUST00000198447 Gna12 protein_coding Interval_115272 chr4 95108568 95109410 + 0 NA intron (ENSMUSG00000087366.7, intron 2 of 3) antisense-intron (ENSMUSG00000087366.7, intron 2 of 4) -17570 ENSMUSG00000085377.1 ENSMUSG00000085377 ENSMUST00000156086 4930551L18Rik lincRNA Interval_171392 chr9 117317047 117317728 + 0 NA intron (ENSMUSG00000039607.17, intron 3 of 15) protein_coding-intron (ENSMUSG00000039607.17, intron 2 of 14) 64851 ENSMUSG00000079669.2 ENSMUSG00000079669 ENSMUST00000172075 Gm17396 processed_transcript Interval_137874 chr6 83086232 83088909 + 0 NA intron (ENSMUSG00000034968.3, intron 1 of 1) protein_coding-intron (ENSMUSG00000034968.3, intron 1 of 1) 232 ENSMUSG00000034968.3 ENSMUSG00000034968 ENSMUST00000151508 Lbx2 protein_coding Interval_149028 chr7 92444738 92445025 + 0 NA exon (ENSMUSG00000052572.19, exon 23 of 23) protein_coding-exon (ENSMUSG00000052572.19, exon 23 of 23) 13711 ENSMUSG00000109031.1 ENSMUSG00000109031 ENSMUST00000207187 Gm45201 TEC Interval_122673 chr5 24591026 24593078 + 0 NA promoter-TSS (ENSMUSG00000076387.1) miRNA-promoter-TSS (ENSMUSG00000076387.1) -62 ENSMUSG00000076387.1 ENSMUSG00000076387 ENSMUST00000102432 Mir671 miRNA Interval_65189 chr16 20425546 20426744 + 0 NA promoter-TSS (ENSMUSG00000022822.16) protein_coding-promoter-TSS (ENSMUSG00000022822.16) -9893 ENSMUSG00000093649.1 ENSMUSG00000093649 ENSMUST00000177106 Gm20614 unprocessed_pseudogene Interval_22094 chr11 6310208 6310560 + 0 NA intron (ENSMUSG00000020456.17, intron 2 of 2) protein_coding-intron (ENSMUSG00000020456.17, intron 2 of 22) 18399 ENSMUSG00000020456.17 ENSMUSG00000020456 ENSMUST00000081894 Ogdh protein_coding Interval_86946 chr19 45139237 45139403 + 0 NA Intergenic Intergenic -12149 ENSMUSG00000025215.10 ENSMUSG00000025215 ENSMUST00000174617 Tlx1 protein_coding Interval_107071 chr3 103297317 103298984 + 0 NA intron (ENSMUSG00000033014.12, intron 1 of 18) protein_coding-intron (ENSMUSG00000033014.12, intron 1 of 19) -27936 ENSMUSG00000033014.12 ENSMUSG00000033014 ENSMUST00000197365 Trim33 protein_coding Interval_87630 chr19 53824852 53825657 + 0 NA promoter-TSS (ENSMUSG00000089679.1) antisense-promoter-TSS (ENSMUSG00000089679.1) -126 ENSMUSG00000089679.1 ENSMUSG00000089679 ENSMUST00000162724 Gm16299 antisense Interval_36321 chr12 41168041 41168780 + 0 NA intron (ENSMUSG00000056899.10, intron 3 of 5) protein_coding-intron (ENSMUSG00000056899.10, intron 4 of 6) -123471 ENSMUSG00000113994.1 ENSMUSG00000113994 ENSMUST00000220956 Gm47375 antisense Interval_73003 chr17 34085086 34085453 + 0 NA intron (ENSMUSG00000098241.2, intron 2 of 3) unprocessed_pseudogene-intron (ENSMUSG00000098241.2, intron 2 of 3) 668 ENSMUSG00000098241.2 ENSMUSG00000098241 ENSMUST00000182803 H2-Pa unprocessed_pseudogene Interval_154185 chr8 13271218 13271677 + 0 NA intron (ENSMUSG00000038506.13, intron 4 of 4) protein_coding-intron (ENSMUSG00000038506.13, intron 4 of 6) -6260 ENSMUSG00000107531.1 ENSMUSG00000107531 ENSMUST00000204295 E330037G11Rik TEC Interval_140352 chr6 116986449 116986712 + 0 NA Intergenic Intergenic 4561 ENSMUSG00000107415.1 ENSMUSG00000107415 ENSMUST00000203025 Gm43929 processed_pseudogene Interval_155548 chr8 34269041 34270274 + 0 NA Intergenic Intergenic 26319 ENSMUSG00000080434.1 ENSMUSG00000080434 ENSMUST00000116784 Gm23177 miRNA Interval_145486 chr7 35155483 35155878 + 0 NA Intergenic Intergenic -14231 ENSMUSG00000108575.1 ENSMUSG00000108575 ENSMUST00000206742 Gm35665 lincRNA Interval_121862 chr5 8951961 8952181 + 0 NA intron (ENSMUSG00000042476.12, intron 25 of 27) protein_coding-intron (ENSMUSG00000042476.12, intron 25 of 27) -19877 ENSMUSG00000078183.3 ENSMUSG00000078183 ENSMUST00000120584 Gm15610 processed_pseudogene Interval_118280 chr4 130016069 130016438 + 0 NA intron (ENSMUSG00000028782.14, intron 22 of 28) protein_coding-intron (ENSMUSG00000028782.14, intron 22 of 28) 4052 ENSMUSG00000028782.14 ENSMUSG00000028782 ENSMUST00000136787 Adgrb2 protein_coding Interval_59638 chr15 57007031 57008395 + 0 NA Intergenic Intergenic -1089 ENSMUSG00000115172.1 ENSMUSG00000115172 ENSMUST00000228364 Gm2582 lincRNA Interval_145788 chr7 38270032 38272110 + 0 NA promoter-TSS (ENSMUSG00000108749.1) antisense-promoter-TSS (ENSMUSG00000108749.1) 256 ENSMUSG00000030423.7 ENSMUSG00000030423 ENSMUST00000206045 Pop4 protein_coding Interval_25024 chr11 43284872 43285174 + 0 NA intron (ENSMUSG00000086791.1, intron 1 of 1) antisense-intron (ENSMUSG00000086791.1, intron 1 of 1) -25239 ENSMUSG00000085533.1 ENSMUSG00000085533 ENSMUST00000127604 Gm12146 antisense Interval_148426 chr7 81182000 81183824 + 0 NA Intergenic Intergenic -21168 ENSMUSG00000083820.1 ENSMUSG00000083820 ENSMUST00000118488 Ndufs6b processed_pseudogene Interval_80504 chr18 43011943 43012276 + 0 NA intron (ENSMUSG00000117792.1, intron 2 of 3) protein_coding-intron (ENSMUSG00000024500.20, intron 1 of 8) 58297 ENSMUSG00000094137.1 ENSMUSG00000094137 ENSMUST00000178200 Gm22264 snRNA Interval_69078 chr16 90475596 90476377 + 0 NA intron (ENSMUSG00000053414.8, intron 7 of 10) protein_coding-intron (ENSMUSG00000053414.8, intron 7 of 10) 74623 ENSMUSG00000116753.1 ENSMUSG00000116753 ENSMUST00000232652 Gm36001 lincRNA Interval_155758 chr8 36952090 36952668 + 0 NA promoter-TSS (ENSMUSG00000031523.16) protein_coding-promoter-TSS (ENSMUSG00000031523.16) 57 ENSMUSG00000031523.16 ENSMUSG00000031523 ENSMUST00000179501 Dlc1 protein_coding Interval_35172 chr12 17763954 17764170 + 0 NA intron (ENSMUSG00000071379.2, intron 1 of 4) protein_coding-intron (ENSMUSG00000071379.2, intron 1 of 3) 35836 ENSMUSG00000071379.2 ENSMUSG00000071379 ENSMUST00000222944 Hpcal1 protein_coding Interval_13318 chr10 14705088 14705928 + 0 NA promoter-TSS (ENSMUSG00000019868.16) protein_coding-promoter-TSS (ENSMUSG00000019868.16) -83 ENSMUSG00000019865.9 ENSMUSG00000019865 ENSMUST00000190751 Nmbr protein_coding Interval_169611 chr9 99434809 99435380 + 0 NA intron (ENSMUSG00000032470.17, intron 1 of 5) protein_coding-intron (ENSMUSG00000032470.17, intron 1 of 5) -16381 ENSMUSG00000046242.8 ENSMUSG00000046242 ENSMUST00000056103 Nme9 protein_coding Interval_111208 chr4 14857149 14857582 + 0 NA Intergenic Intergenic -6711 ENSMUSG00000028221.3 ENSMUSG00000028221 ENSMUST00000029875 Pip4p2 protein_coding Interval_40720 chr12 107915362 107917496 + 0 NA exon (ENSMUSG00000048251.15, exon 4 of 4) protein_coding-exon (ENSMUSG00000048251.15, exon 4 of 4) 86985 ENSMUSG00000048251.15 ENSMUSG00000048251 ENSMUST00000109891 Bcl11b protein_coding Interval_81648 chr18 62830269 62830577 + 0 NA Intergenic Intergenic -74108 ENSMUSG00000041789.7 ENSMUSG00000041789 ENSMUST00000048109 2700046A07Rik lincRNA Interval_79271 chr18 29303023 29303255 + 0 NA Intergenic Intergenic 57792 ENSMUSG00000117638.1 ENSMUSG00000117638 ENSMUST00000234116 Gm34743 processed_pseudogene Interval_24759 chr11 36911399 36911828 + 0 NA intron (ENSMUSG00000049336.16, intron 1 of 28) protein_coding-intron (ENSMUSG00000049336.16, intron 1 of 28) 32553 ENSMUSG00000049336.16 ENSMUSG00000049336 ENSMUST00000157030 Tenm2 protein_coding Interval_48142 chr13 96641229 96642087 + 0 NA Intergenic Intergenic 12603 ENSMUSG00000021669.15 ENSMUSG00000021669 ENSMUST00000221394 Col4a3bp protein_coding Interval_94413 chr2 90846573 90847904 + 0 NA promoter-TSS (ENSMUSG00000027282.17) protein_coding-promoter-TSS (ENSMUSG00000027282.17) 7 ENSMUSG00000027282.17 ENSMUSG00000027282 ENSMUST00000142350 Mtch2 protein_coding Interval_131861 chr5 140442878 140445474 + 0 NA TTS (ENSMUSG00000056076.13) protein_coding-TTS (ENSMUSG00000056076.13) -1469 ENSMUSG00000106350.2 ENSMUSG00000106350 ENSMUST00000197549 Gm4869 protein_coding Interval_169866 chr9 102625466 102626931 + 0 NA promoter-TSS (ENSMUSG00000035048.13) protein_coding-promoter-TSS (ENSMUSG00000035048.13) -217 ENSMUSG00000032534.18 ENSMUSG00000032534 ENSMUST00000162297 Cep63 protein_coding Interval_135125 chr6 35815554 35817054 + 0 NA Intergenic Intergenic -110407 ENSMUSG00000107145.1 ENSMUSG00000107145 ENSMUST00000202865 Gm43442 processed_pseudogene Interval_31123 chr11 98294357 98295097 + 0 NA Intergenic Intergenic 9345 ENSMUSG00000093673.1 ENSMUSG00000093673 ENSMUST00000176721 Gm20644 sense_overlapping Interval_27950 chr11 71389516 71390090 + 0 NA Intergenic Intergenic 46377 ENSMUSG00000085230.1 ENSMUSG00000085230 ENSMUST00000152249 Gm16013 lincRNA Interval_121790 chr5 8256169 8257150 + 0 NA intron (ENSMUSG00000040537.17, intron 3 of 4) protein_coding-intron (ENSMUSG00000040537.17, intron 3 of 28) 13936 ENSMUSG00000088103.1 ENSMUSG00000088103 ENSMUST00000157478 Gm23993 snoRNA Interval_10357 chr1 169927878 169928805 + 0 NA promoter-TSS (ENSMUSG00000070532.5) protein_coding-promoter-TSS (ENSMUSG00000070532.5) -1588 ENSMUSG00000070532.5 ENSMUSG00000070532 ENSMUST00000175731 Ccdc190 protein_coding Interval_41988 chr13 5988969 5990011 + 0 NA intron (ENSMUSG00000113017.1, intron 3 of 4) lincRNA-intron (ENSMUSG00000113017.1, intron 1 of 2) 8061 ENSMUSG00000077971.1 ENSMUSG00000077971 ENSMUST00000104778 Gm26259 miRNA Interval_166184 chr9 57314863 57315868 + 0 NA Intergenic Intergenic 14050 ENSMUSG00000111457.1 ENSMUSG00000111457 ENSMUST00000214851 Gm18996 processed_pseudogene Interval_123101 chr5 29712328 29713843 + 0 NA Intergenic Intergenic 3451 ENSMUSG00000088150.1 ENSMUSG00000088150 ENSMUST00000157525 Gm26346 misc_RNA Interval_153527 chr8 3168238 3168717 + 0 NA intron (ENSMUSG00000005534.10, intron 13 of 20) protein_coding-intron (ENSMUSG00000005534.10, intron 13 of 20) -8922 ENSMUSG00000005534.10 ENSMUSG00000005534 ENSMUST00000139504 Insr protein_coding Interval_55976 chr14 103539474 103541073 + 0 NA intron (ENSMUSG00000022123.9, intron 5 of 29) protein_coding-intron (ENSMUSG00000022123.9, intron 5 of 30) 26931 ENSMUSG00000022123.9 ENSMUSG00000022123 ENSMUST00000095576 Scel protein_coding Interval_11695 chr1 184727356 184728038 + 0 NA exon (ENSMUSG00000039377.7, exon 4 of 4) protein_coding-exon (ENSMUSG00000039377.7, exon 4 of 4) 3901 ENSMUSG00000039377.7 ENSMUSG00000039377 ENSMUST00000174257 Hlx protein_coding Interval_29894 chr11 87569039 87569311 + 0 NA TTS (ENSMUSG00000020486.19) protein_coding-TTS (ENSMUSG00000020486.19) 2522 ENSMUSG00000020486.19 ENSMUSG00000020486 ENSMUST00000143950 Septin4 protein_coding Interval_2441 chr1 39367271 39369565 + 0 NA intron (ENSMUSG00000073702.11, intron 1 of 3) protein_coding-intron (ENSMUSG00000073702.11, intron 2 of 4) 269 ENSMUSG00000073702.11 ENSMUSG00000073702 ENSMUST00000191855 Rpl31 protein_coding Interval_114173 chr4 65678664 65680560 + 0 NA intron (ENSMUSG00000028373.16, intron 12 of 21) protein_coding-intron (ENSMUSG00000028373.16, intron 13 of 22) 74363 ENSMUSG00000051675.13 ENSMUSG00000051675 ENSMUST00000156922 Trim32 protein_coding Interval_126690 chr5 92076221 92076576 + 0 NA intron (ENSMUSG00000029405.16, intron 1 of 11) protein_coding-intron (ENSMUSG00000029405.16, intron 1 of 10) -8866 ENSMUSG00000029405.16 ENSMUSG00000029405 ENSMUST00000202125 G3bp2 protein_coding Interval_18609 chr10 88410043 88410659 + 0 NA intron (ENSMUSG00000035311.16, intron 3 of 5) protein_coding-intron (ENSMUSG00000035311.16, intron 2 of 20) -25693 ENSMUSG00000035311.16 ENSMUSG00000035311 ENSMUST00000155306 Gnptab protein_coding Interval_105678 chr3 88530497 88533384 + 0 NA promoter-TSS (ENSMUSG00000074480.4) protein_coding-promoter-TSS (ENSMUSG00000074480.4) -455 ENSMUSG00000074480.4 ENSMUSG00000074480 ENSMUST00000172699 Mex3a protein_coding Interval_80005 chr18 36583446 36583856 + 0 NA TTS (ENSMUSG00000024483.19) protein_coding-TTS (ENSMUSG00000024483.19) -26307 ENSMUSG00000085172.1 ENSMUSG00000085172 ENSMUST00000153606 Gm6542 processed_pseudogene Interval_41721 chr12 118300948 118302724 + 0 NA promoter-TSS (ENSMUSG00000025323.10) protein_coding-promoter-TSS (ENSMUSG00000025323.10) -468 ENSMUSG00000025323.10 ENSMUSG00000025323 ENSMUST00000221844 Sp4 protein_coding Interval_46378 chr13 64343467 64344574 + 0 NA Intergenic Intergenic -17032 ENSMUSG00000113683.1 ENSMUSG00000113683 ENSMUST00000221233 Gm47123 antisense Interval_35666 chr12 27150943 27151552 + 0 NA intron (ENSMUSG00000094002.3, intron 3 of 3) lincRNA-intron (ENSMUSG00000094002.3, intron 1 of 1) 9256 ENSMUSG00000094002.3 ENSMUSG00000094002 ENSMUST00000183238 Gm9866 lincRNA Interval_20858 chr10 121555956 121556544 + 0 NA intron (ENSMUSG00000020115.3, intron 12 of 20) protein_coding-intron (ENSMUSG00000020115.3, intron 12 of 20) -2087 ENSMUSG00000020115.3 ENSMUSG00000020115 ENSMUST00000219493 Tbk1 protein_coding Interval_55205 chr14 79311600 79311905 + 0 NA Intergenic Intergenic -10107 ENSMUSG00000022018.7 ENSMUSG00000022018 ENSMUST00000022595 Rgcc protein_coding Interval_53089 chr14 54395928 54396158 + 0 NA intron (ENSMUSG00000000958.10, intron 2 of 2) protein_coding-intron (ENSMUSG00000000958.10, intron 2 of 9) 14159 ENSMUSG00000000958.10 ENSMUSG00000000958 ENSMUST00000195999 Slc7a7 protein_coding Interval_88594 chr2 6449386 6450320 + 0 NA Intergenic Intergenic -13820 ENSMUSG00000085716.1 ENSMUSG00000085716 ENSMUST00000126659 Gm13388 antisense Interval_114980 chr4 88012392 88012992 + 0 NA intron (ENSMUSG00000028496.17, intron 2 of 5) protein_coding-intron (ENSMUSG00000028496.17, intron 2 of 10) -20809 ENSMUSG00000084809.1 ENSMUSG00000084809 ENSMUST00000130576 Gm12631 antisense Interval_116293 chr4 109400656 109401561 + 0 NA Intergenic Intergenic 3104 ENSMUSG00000085873.1 ENSMUSG00000085873 ENSMUST00000150239 Ttc39aos1 antisense Interval_22869 chr11 16924434 16925302 + 0 NA Intergenic Intergenic 26225 ENSMUSG00000087060.7 ENSMUSG00000087060 ENSMUST00000142777 Eldr processed_transcript Interval_132564 chr5 146351049 146351246 + 0 NA Intergenic Intergenic 64971 ENSMUSG00000029635.15 ENSMUSG00000029635 ENSMUST00000160924 Cdk8 protein_coding Interval_123045 chr5 29195358 29196491 + 0 NA promoter-TSS (ENSMUSG00000029130.12) protein_coding-promoter-TSS (ENSMUSG00000029130.12) -663 ENSMUSG00000029130.12 ENSMUSG00000029130 ENSMUST00000163050 Rnf32 protein_coding Interval_93724 chr2 76215769 76216603 + 0 NA promoter-TSS (ENSMUSG00000075270.11) protein_coding-promoter-TSS (ENSMUSG00000075270.11) -792 ENSMUSG00000075270.11 ENSMUSG00000075270 ENSMUST00000144892 Pde11a protein_coding Interval_148537 chr7 82251969 82252164 + 0 NA intron (ENSMUSG00000030638.13, intron 1 of 5) protein_coding-intron (ENSMUSG00000030638.13, intron 1 of 8) 76910 ENSMUSG00000030638.13 ENSMUSG00000030638 ENSMUST00000178526 Sh3gl3 protein_coding Interval_106586 chr3 97536893 97537752 + 0 NA Intergenic Intergenic -72610 ENSMUSG00000105004.1 ENSMUSG00000105004 ENSMUST00000198613 Gm43075 TEC Interval_83671 chr19 3619353 3619663 + 0 NA intron (ENSMUSG00000024913.16, intron 10 of 22) protein_coding-intron (ENSMUSG00000024913.16, intron 9 of 22) -43786 ENSMUSG00000024908.15 ENSMUSG00000024908 ENSMUST00000226109 Ppp6r3 protein_coding Interval_144438 chr7 25166246 25166573 + 0 NA intron (ENSMUSG00000008496.19, intron 1 of 4) protein_coding-intron (ENSMUSG00000008496.19, intron 1 of 4) 11340 ENSMUSG00000074274.7 ENSMUSG00000074274 ENSMUST00000186424 D930028M14Rik lincRNA Interval_126444 chr5 88604315 88605656 + 0 NA intron (ENSMUSG00000029291.11, intron 3 of 14) protein_coding-intron (ENSMUSG00000029291.11, intron 1 of 12) -41706 ENSMUSG00000029291.11 ENSMUSG00000029291 ENSMUST00000199956 Rufy3 protein_coding Interval_7214 chr1 127904081 127905288 + 0 NA TTS (ENSMUSG00000036104.12) protein_coding-TTS (ENSMUSG00000036104.12) 35872 ENSMUSG00000036104.12 ENSMUSG00000036104 ENSMUST00000131884 Rab3gap1 protein_coding Interval_125826 chr5 74750002 74750867 + 0 NA intron (ENSMUSG00000106987.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000106987.1, intron 1 of 1) 552 ENSMUSG00000106987.1 ENSMUSG00000106987 ENSMUST00000202942 Gm42575 lincRNA Interval_19236 chr10 95677644 95678277 + 0 NA Intergenic Intergenic -4571 ENSMUSG00000074780.2 ENSMUSG00000074780 ENSMUST00000099328 Anapc15-ps protein_coding Interval_134488 chr6 29092356 29093333 + 0 NA Intergenic Intergenic 20762 ENSMUSG00000064436.1 ENSMUSG00000064436 ENSMUST00000082502 Gm25589 snRNA Interval_58863 chr15 39325607 39325817 + 0 NA intron (ENSMUSG00000037386.16, intron 2 of 25) protein_coding-intron (ENSMUSG00000037386.16, intron 2 of 26) -17134 ENSMUSG00000095297.1 ENSMUSG00000095297 ENSMUST00000102078 Gm25381 miRNA Interval_62468 chr15 93236686 93237313 + 0 NA Intergenic Intergenic 2636 ENSMUSG00000065911.1 ENSMUSG00000065911 ENSMUST00000083977 Gm24447 misc_RNA Interval_2176 chr1 36867784 36868786 + 0 NA intron (ENSMUSG00000026116.11, intron 5 of 41) protein_coding-intron (ENSMUSG00000026116.11, intron 4 of 40) 3760 ENSMUSG00000103016.1 ENSMUSG00000103016 ENSMUST00000192008 Gm37506 TEC Interval_37542 chr12 69719351 69719584 + 0 NA intron (ENSMUSG00000020988.9, intron 3 of 3) protein_coding-intron (ENSMUSG00000020988.9, intron 3 of 9) 5306 ENSMUSG00000020988.9 ENSMUSG00000020988 ENSMUST00000223387 L2hgdh protein_coding Interval_18330 chr10 84981722 84982378 + 0 NA intron (ENSMUSG00000035620.15, intron 6 of 7) protein_coding-intron (ENSMUSG00000035620.15, intron 7 of 9) 44657 ENSMUSG00000035620.15 ENSMUSG00000035620 ENSMUST00000214820 Ric8b protein_coding Interval_97953 chr2 146082324 146084051 + 0 NA intron (ENSMUSG00000037143.17, intron 4 of 4) protein_coding-intron (ENSMUSG00000037143.17, intron 2 of 6) -131426 ENSMUSG00000037143.17 ENSMUSG00000037143 ENSMUST00000167179 Cfap61 protein_coding Interval_53585 chr14 59597182 59598529 + 0 NA promoter-TSS (ENSMUSG00000021982.14) protein_coding-promoter-TSS (ENSMUSG00000021982.14) 84 ENSMUSG00000021982.14 ENSMUSG00000021982 ENSMUST00000223842 Cdadc1 protein_coding Interval_32819 chr11 111064761 111066613 + 0 NA promoter-TSS (ENSMUSG00000041695.2) protein_coding-promoter-TSS (ENSMUSG00000041695.2) -477 ENSMUSG00000041695.2 ENSMUSG00000041695 ENSMUST00000042970 Kcnj2 protein_coding Interval_112979 chr4 46611107 46611867 + 0 NA intron (ENSMUSG00000039813.14, intron 9 of 12) protein_coding-intron (ENSMUSG00000039813.14, intron 9 of 12) -9596 ENSMUSG00000028337.14 ENSMUSG00000028337 ENSMUST00000127304 Coro2a protein_coding Interval_64110 chr16 8459033 8459544 + 0 NA Intergenic Intergenic -9502 ENSMUSG00000084475.1 ENSMUSG00000084475 ENSMUST00000122526 Gm25782 misc_RNA Interval_161519 chr8 120898157 120898422 + 0 NA intron (ENSMUSG00000092329.1, intron 1 of 15) protein_coding-intron (ENSMUSG00000092329.1, intron 1 of 15) 18083 ENSMUSG00000097087.1 ENSMUSG00000097087 ENSMUST00000181778 Gm26878 lincRNA Interval_36578 chr12 50763984 50764191 + 0 NA intron (ENSMUSG00000112372.1, intron 2 of 8) lincRNA-intron (ENSMUSG00000112372.1, intron 2 of 8) 10990 ENSMUSG00000112372.1 ENSMUSG00000112372 ENSMUST00000220240 Gm48779 lincRNA Interval_66038 chr16 31132202 31132597 + 0 NA intron (ENSMUSG00000049076.12, intron 8 of 23) protein_coding-intron (ENSMUSG00000049076.12, intron 7 of 21) -25471 ENSMUSG00000116943.1 ENSMUSG00000116943 ENSMUST00000231868 Gm18237 processed_pseudogene Interval_10690 chr1 172920859 172921488 + 0 NA Intergenic Intergenic 15161 ENSMUSG00000077252.1 ENSMUSG00000077252 ENSMUST00000104064 Gm26077 snoRNA Interval_128642 chr5 114465704 114466281 + 0 NA Intergenic Intergenic 13572 ENSMUSG00000041939.14 ENSMUSG00000041939 ENSMUST00000139420 Mvk protein_coding Interval_22714 chr11 13716281 13716874 + 0 NA Intergenic Intergenic -445502 ENSMUSG00000081631.1 ENSMUSG00000081631 ENSMUST00000121451 Gm12005 processed_pseudogene Interval_117636 chr4 125177064 125178028 + 0 NA Intergenic Intergenic -51051 ENSMUSG00000087010.1 ENSMUSG00000087010 ENSMUST00000130055 1700041M05Rik lincRNA Interval_129337 chr5 119286975 119287790 + 0 NA Intergenic Intergenic -9863 ENSMUSG00000084548.1 ENSMUSG00000084548 ENSMUST00000122599 n-R5s175 rRNA Interval_71392 chr17 23199135 23200537 + 0 NA Intergenic Intergenic -8457 ENSMUSG00000002617.14 ENSMUSG00000002617 ENSMUST00000151447 Zfp40 protein_coding Interval_132143 chr5 142935522 142936768 + 0 NA Intergenic Intergenic -24231 ENSMUSG00000029581.14 ENSMUSG00000029581 ENSMUST00000135293 Fscn1 protein_coding Interval_148094 chr7 79189925 79190864 + 0 NA Intergenic Intergenic -42163 ENSMUSG00000030605.15 ENSMUSG00000030605 ENSMUST00000206844 Mfge8 protein_coding Interval_39700 chr12 93642467 93642737 + 0 NA Intergenic Intergenic -73818 ENSMUSG00000112982.1 ENSMUSG00000112982 ENSMUST00000221024 Gm21007 processed_pseudogene Interval_149802 chr7 101663307 101664201 + 0 NA promoter-TSS (ENSMUSG00000001829.17) protein_coding-promoter-TSS (ENSMUSG00000001829.17) -19 ENSMUSG00000001829.17 ENSMUSG00000001829 ENSMUST00000150832 Clpb protein_coding Interval_75212 chr17 64748935 64750117 + 0 NA intron (ENSMUSG00000091160.1, intron 1 of 1) protein_coding-intron (ENSMUSG00000024085.13, intron 20 of 21) 4570 ENSMUSG00000091160.1 ENSMUSG00000091160 ENSMUST00000170636 Gm17133 antisense Interval_6012 chr1 93897139 93897376 + 0 NA Intergenic Intergenic -8987 ENSMUSG00000101660.1 ENSMUSG00000101660 ENSMUST00000190039 Gm18666 unprocessed_pseudogene Interval_72189 chr17 28505053 28505230 + 0 NA intron (ENSMUSG00000024222.17, intron 1 of 1) protein_coding-intron (ENSMUSG00000024222.17, intron 2 of 13) 12373 ENSMUSG00000024222.17 ENSMUSG00000024222 ENSMUST00000147716 Fkbp5 protein_coding Interval_3637 chr1 60179863 60181166 + 0 NA promoter-TSS (ENSMUSG00000073664.11) protein_coding-promoter-TSS (ENSMUSG00000073664.11) 63259 ENSMUSG00000082609.1 ENSMUSG00000082609 ENSMUST00000118718 Gm15464 processed_pseudogene Interval_136649 chr6 57010901 57011174 + 0 NA Intergenic Intergenic 13794 ENSMUSG00000115701.1 ENSMUSG00000115701 ENSMUST00000079669 Vmn1r6 protein_coding Interval_3594 chr1 59836626 59836963 + 0 NA intron (ENSMUSG00000067336.6, intron 3 of 12) protein_coding-intron (ENSMUSG00000067336.6, intron 3 of 12) -13871 ENSMUSG00000067336.6 ENSMUSG00000067336 ENSMUST00000186246 Bmpr2 protein_coding Interval_168520 chr9 82993902 82994384 + 0 NA Intergenic Intergenic -14460 ENSMUSG00000111839.1 ENSMUSG00000111839 ENSMUST00000216894 Gm39383 lincRNA Interval_170316 chr9 106881635 106882493 + 0 NA exon (ENSMUSG00000074102.4, exon 1 of 1) protein_coding-exon (ENSMUSG00000074102.4, exon 1 of 1) 3555 ENSMUSG00000074102.4 ENSMUSG00000074102 ENSMUST00000185707 Rbm15b protein_coding Interval_139944 chr6 112948731 112949004 + 0 NA exon (ENSMUSG00000108103.1, exon 2 of 2) lincRNA-exon (ENSMUSG00000108103.1, exon 2 of 2) 1830 ENSMUSG00000108103.1 ENSMUSG00000108103 ENSMUST00000204406 Gm44081 lincRNA Interval_78338 chr18 12057824 12058049 + 0 NA TTS (ENSMUSG00000049411.15) protein_coding-TTS (ENSMUSG00000049411.15) 63544 ENSMUSG00000049411.15 ENSMUSG00000049411 ENSMUST00000234833 Tmem241 protein_coding Interval_18038 chr10 81495912 81496879 + 0 NA promoter-TSS (ENSMUSG00000020238.14) protein_coding-promoter-TSS (ENSMUSG00000020238.14) 3737 ENSMUSG00000044199.6 ENSMUSG00000044199 ENSMUST00000053646 S1pr4 protein_coding Interval_104077 chr3 58319101 58319366 + 0 NA Intergenic Intergenic -3923 ENSMUSG00000106176.1 ENSMUSG00000106176 ENSMUST00000199863 Gm43730 processed_pseudogene Interval_78371 chr18 12235841 12237159 + 0 NA promoter-TSS (ENSMUSG00000024413.14) protein_coding-promoter-TSS (ENSMUSG00000024413.14) -42230 ENSMUSG00000024413.14 ENSMUSG00000024413 ENSMUST00000144435 Npc1 protein_coding Interval_163551 chr9 22041498 22042963 + 0 NA intron (ENSMUSG00000111842.1, intron 3 of 4) protein_coding-intron (ENSMUSG00000003410.8, intron 1 of 6) 9793 ENSMUSG00000003410.8 ENSMUSG00000003410 ENSMUST00000215901 Elavl3 protein_coding Interval_46077 chr13 60986885 60987161 + 0 NA Intergenic Intergenic 18888 ENSMUSG00000055298.6 ENSMUSG00000055298 ENSMUST00000224306 Ctsj protein_coding Interval_9062 chr1 153353578 153354159 + 0 NA Intergenic Intergenic 48436 ENSMUSG00000079138.3 ENSMUSG00000079138 ENSMUST00000110797 Gm8818 processed_pseudogene Interval_41805 chr12 119701914 119702730 + 0 NA Intergenic Intergenic 92404 ENSMUSG00000113091.1 ENSMUSG00000113091 ENSMUST00000223175 Gm9279 processed_pseudogene Interval_81001 chr18 52542968 52543798 + 0 NA intron (ENSMUSG00000118365.1, intron 1 of 2) antisense-intron (ENSMUSG00000118365.1, intron 1 of 2) -13516 ENSMUSG00000024529.14 ENSMUSG00000024529 ENSMUST00000171470 Lox protein_coding Interval_27011 chr11 62354789 62355965 + 0 NA intron (ENSMUSG00000018501.17, intron 3 of 5) protein_coding-intron (ENSMUSG00000018501.17, intron 23 of 45) 23956 ENSMUSG00000081944.1 ENSMUSG00000081944 ENSMUST00000121709 Gm12276 processed_pseudogene Interval_29725 chr11 86414569 86414817 + 0 NA Intergenic Intergenic 5867 ENSMUSG00000088091.1 ENSMUSG00000088091 ENSMUST00000157466 Gm23667 rRNA Interval_164577 chr9 39186925 39187756 + 0 NA exon (ENSMUSG00000094970.3, exon 2 of 2) protein_coding-exon (ENSMUSG00000094970.3, exon 2 of 2) 1812 ENSMUSG00000110875.1 ENSMUSG00000110875 ENSMUST00000213716 Gm47100 processed_pseudogene Interval_9 GL456210.1 112840 113495 + 0 NA NA NA NA NA Interval_29563 chr11 84929577 84929912 + 0 NA Intergenic Intergenic -13420 ENSMUSG00000020526.12 ENSMUSG00000020526 ENSMUST00000156046 Znhit3 protein_coding Interval_25050 chr11 43516288 43517060 + 0 NA Intergenic Intergenic -12572 ENSMUSG00000044707.7 ENSMUSG00000044707 ENSMUST00000152153 Ccnjl protein_coding Interval_146209 chr7 44701851 44703523 + 0 NA Intergenic Intergenic -6055 ENSMUSG00000066500.5 ENSMUSG00000066500 ENSMUST00000207182 Izumo2 protein_coding Interval_12407 chr1 193129750 193131014 + 0 NA promoter-TSS (ENSMUSG00000016181.9) protein_coding-promoter-TSS (ENSMUSG00000016181.9) -175 ENSMUSG00000016181.9 ENSMUSG00000016181 ENSMUST00000194124 Utp25 protein_coding Interval_11051 chr1 178924826 178925198 + 0 NA intron (ENSMUSG00000026494.12, intron 12 of 14) protein_coding-intron (ENSMUSG00000026494.12, intron 9 of 11) -7398 ENSMUSG00000089713.1 ENSMUSG00000089713 ENSMUST00000162545 Gm16564 antisense Interval_74844 chr17 56840440 56841332 + 0 NA Intergenic Intergenic -9947 ENSMUSG00000024206.15 ENSMUSG00000024206 ENSMUST00000233643 Rfx2 protein_coding Interval_3885 chr1 64337317 64339027 + 0 NA Intergenic Intergenic -35129 ENSMUSG00000101895.1 ENSMUSG00000101895 ENSMUST00000190863 Gm28981 lincRNA Interval_64033 chr16 5811092 5812318 + 0 NA Intergenic Intergenic -163880 ENSMUSG00000101481.1 ENSMUSG00000101481 ENSMUST00000190515 1700123O21Rik sense_intronic Interval_19107 chr10 94616365 94616673 + 0 NA Intergenic Intergenic -4021 ENSMUSG00000112477.1 ENSMUSG00000112477 ENSMUST00000219287 Gm48657 lincRNA Interval_36350 chr12 41729434 41730459 + 0 NA intron (ENSMUSG00000056899.10, intron 5 of 5) protein_coding-intron (ENSMUSG00000056899.10, intron 6 of 6) 45552 ENSMUSG00000113438.1 ENSMUSG00000113438 ENSMUST00000221651 Gm47369 processed_pseudogene Interval_66690 chr16 36165110 36166162 + 0 NA Intergenic Intergenic -3515 ENSMUSG00000096342.1 ENSMUSG00000096342 ENSMUST00000157410 Gm22885 snRNA Interval_130179 chr5 124777251 124777632 + 0 NA intron (ENSMUSG00000038011.15, intron 32 of 77) protein_coding-intron (ENSMUSG00000038011.15, intron 33 of 78) -9112 ENSMUSG00000038011.15 ENSMUSG00000038011 ENSMUST00000196708 Dnah10 protein_coding Interval_14358 chr10 31456353 31457856 + 0 NA Intergenic Intergenic -5022 ENSMUSG00000111865.1 ENSMUSG00000111865 ENSMUST00000217582 Gm47687 TEC Interval_59297 chr15 50880895 50881187 + 0 NA intron (ENSMUSG00000038679.16, intron 1 of 8) protein_coding-intron (ENSMUSG00000038679.16, intron 2 of 6) 8073 ENSMUSG00000084458.1 ENSMUSG00000084458 ENSMUST00000122509 Mir1907 miRNA Interval_63524 chr15 101742577 101743443 + 0 NA promoter-TSS (ENSMUSG00000051879.4) protein_coding-promoter-TSS (ENSMUSG00000051879.4) 99 ENSMUSG00000051879.4 ENSMUSG00000051879 ENSMUST00000023710 Krt71 protein_coding Interval_143987 chr7 18785784 18786354 + 0 NA promoter-TSS (ENSMUSG00000109116.1) processed_pseudogene-promoter-TSS (ENSMUSG00000109116.1) -263 ENSMUSG00000109116.1 ENSMUSG00000109116 ENSMUST00000207882 Sycp1-ps1 processed_pseudogene Interval_113709 chr4 57788648 57789722 + 0 NA intron (ENSMUSG00000038729.24, intron 1 of 1) protein_coding-intron (ENSMUSG00000038729.24, intron 2 of 2) -25284 ENSMUSG00000073846.4 ENSMUSG00000073846 ENSMUST00000154462 Gm12526 processed_transcript Interval_5125 chr1 85843584 85843848 + 0 NA exon (ENSMUSG00000036707.16, exon 1 of 1) protein_coding-exon (ENSMUSG00000036707.16, exon 1 of 1) 636 ENSMUSG00000036707.16 ENSMUSG00000036707 ENSMUST00000187623 Cab39 protein_coding Interval_111137 chr4 12906673 12907568 + 0 NA intron (ENSMUSG00000055963.12, intron 1 of 4) protein_coding-intron (ENSMUSG00000055963.12, intron 1 of 4) 262 ENSMUSG00000055963.12 ENSMUSG00000055963 ENSMUST00000156536 Triqk protein_coding Interval_165746 chr9 52106856 52107140 + 0 NA Intergenic Intergenic -3219 ENSMUSG00000099213.1 ENSMUSG00000099213 ENSMUST00000185123 Gm27686 miRNA Interval_38901 chr12 83696474 83696722 + 0 NA intron (ENSMUSG00000019969.14, intron 1 of 11) protein_coding-intron (ENSMUSG00000019969.14, intron 1 of 11) 8410 ENSMUSG00000019969.14 ENSMUSG00000019969 ENSMUST00000221072 Psen1 protein_coding Interval_83563 chr18 89669137 89669361 + 0 NA intron (ENSMUSG00000073514.4, intron 1 of 7) protein_coding-intron (ENSMUSG00000073514.4, intron 1 of 7) -63756 ENSMUSG00000092792.1 ENSMUSG00000092792 ENSMUST00000175051 Gm22694 miRNA Interval_28281 chr11 74868869 74869338 + 0 NA promoter-TSS (ENSMUSG00000038351.14) protein_coding-promoter-TSS (ENSMUSG00000038351.14) -11 ENSMUSG00000038351.14 ENSMUSG00000038351 ENSMUST00000148421 Sgsm2 protein_coding Interval_117486 chr4 124081102 124081429 + 0 NA Intergenic Intergenic 155031 ENSMUSG00000082515.1 ENSMUSG00000082515 ENSMUST00000118389 Gm12902 processed_pseudogene Interval_74354 chr17 49359349 49361082 + 0 NA Intergenic Intergenic -28719 ENSMUSG00000117198.1 ENSMUSG00000117198 ENSMUST00000233953 Gm18067 processed_pseudogene Interval_142124 chr6 137435324 137435897 + 0 NA intron (ENSMUSG00000030223.14, intron 7 of 14) protein_coding-intron (ENSMUSG00000030223.14, intron 19 of 26) 4305 ENSMUSG00000107759.1 ENSMUSG00000107759 ENSMUST00000204925 Gm44258 sense_intronic Interval_21627 chr11 3321235 3322370 + 0 NA intron (ENSMUSG00000053263.3, intron 1 of 1) processed_transcript-intron (ENSMUSG00000053263.3, intron 1 of 1) -8991 ENSMUSG00000034614.14 ENSMUSG00000034614 ENSMUST00000130747 Pik3ip1 protein_coding Interval_169756 chr9 100988103 100988362 + 0 NA intron (ENSMUSG00000032527.13, intron 8 of 13) protein_coding-intron (ENSMUSG00000032527.13, intron 9 of 14) 32463 ENSMUSG00000037286.15 ENSMUSG00000037286 ENSMUST00000191345 Stag1 protein_coding Interval_153943 chr8 11414280 11415308 + 0 NA exon (ENSMUSG00000031503.13, exon 18 of 48) protein_coding-exon (ENSMUSG00000031503.13, exon 18 of 48) 3098 ENSMUSG00000084783.1 ENSMUSG00000084783 ENSMUST00000148654 Gm15419 antisense Interval_100715 chr2 171969223 171970263 + 0 NA Intergenic Intergenic -7612 ENSMUSG00000086823.7 ENSMUSG00000086823 ENSMUST00000125465 1700028P15Rik processed_transcript Interval_22201 chr11 7129532 7130029 + 0 NA intron (ENSMUSG00000020431.5, intron 4 of 19) protein_coding-intron (ENSMUSG00000020431.5, intron 4 of 19) -30102 ENSMUSG00000020431.5 ENSMUSG00000020431 ENSMUST00000135398 Adcy1 protein_coding Interval_100702 chr2 171828526 171828996 + 0 NA Intergenic Intergenic 133370 ENSMUSG00000086823.7 ENSMUSG00000086823 ENSMUST00000125465 1700028P15Rik processed_transcript Interval_110455 chr3 158389018 158389186 + 0 NA intron (ENSMUSG00000028176.13, intron 2 of 24) protein_coding-intron (ENSMUSG00000028176.13, intron 3 of 27) 94688 ENSMUSG00000106448.1 ENSMUSG00000106448 ENSMUST00000196431 Gm43486 TEC Interval_97677 chr2 142644710 142645363 + 0 NA intron (ENSMUSG00000038844.10, intron 26 of 26) protein_coding-intron (ENSMUSG00000038844.10, intron 25 of 25) 68108 ENSMUSG00000083215.3 ENSMUSG00000083215 ENSMUST00000119377 Rbmx2-ps processed_pseudogene Interval_26916 chr11 61543987 61544489 + 0 NA promoter-TSS (ENSMUSG00000001036.17) protein_coding-promoter-TSS (ENSMUSG00000001036.17) 16483 ENSMUSG00000085459.1 ENSMUSG00000085459 ENSMUST00000138136 Gm12272 antisense Interval_84751 chr19 16229788 16230205 + 0 NA intron (ENSMUSG00000024639.5, intron 2 of 2) protein_coding-intron (ENSMUSG00000024639.5, intron 2 of 6) 37625 ENSMUSG00000075268.2 ENSMUSG00000075268 ENSMUST00000099988 Gm10819 processed_pseudogene Interval_111731 chr4 26933200 26934532 + 0 NA Intergenic Intergenic 192643 ENSMUSG00000083447.1 ENSMUSG00000083447 ENSMUST00000120562 Gm11904 processed_pseudogene Interval_71157 chr17 20440475 20441442 + 0 NA Intergenic Intergenic -7525 ENSMUSG00000093454.1 ENSMUSG00000093454 ENSMUST00000176730 Vmn1r-ps143 unprocessed_pseudogene Interval_110879 chr4 9456345 9456971 + 0 NA intron (ENSMUSG00000028207.18, intron 22 of 22) protein_coding-intron (ENSMUSG00000028207.18, intron 23 of 23) -9459 ENSMUSG00000087564.1 ENSMUSG00000087564 ENSMUST00000155578 Gm11817 antisense Interval_58913 chr15 39937438 39937656 + 0 NA intron (ENSMUSG00000022305.13, intron 1 of 1) protein_coding-intron (ENSMUSG00000022305.13, intron 1 of 6) 6143 ENSMUSG00000022305.13 ENSMUSG00000022305 ENSMUST00000146714 Lrp12 protein_coding Interval_23613 chr11 23801693 23803356 + 0 NA Intergenic Intergenic -25477 ENSMUSG00000087741.1 ENSMUSG00000087741 ENSMUST00000157116 Gm23827 snRNA Interval_14997 chr10 41791437 41792798 + 0 NA intron (ENSMUSG00000019813.16, intron 1 of 10) protein_coding-intron (ENSMUSG00000019813.16, intron 1 of 10) 17513 ENSMUSG00000019813.16 ENSMUSG00000019813 ENSMUST00000215496 Cep57l1 protein_coding Interval_11156 chr1 179728138 179728955 + 0 NA intron (ENSMUSG00000087236.3, intron 6 of 22) protein_coding-intron (ENSMUSG00000087236.3, intron 6 of 22) -28266 ENSMUSG00000087236.3 ENSMUSG00000087236 ENSMUST00000223392 Kif28 protein_coding Interval_153986 chr8 11641933 11642396 + 0 NA Intergenic Intergenic 4882 ENSMUSG00000109810.1 ENSMUSG00000109810 ENSMUST00000209605 Gm45592 TEC Interval_38630 chr12 80674772 80675344 + 0 NA TTS (ENSMUSG00000048833.9) protein_coding-TTS (ENSMUSG00000048833.9) 17408 ENSMUSG00000044062.7 ENSMUSG00000044062 ENSMUST00000153297 Plekhd1os antisense Interval_136685 chr6 57743336 57743842 + 0 NA intron (ENSMUSG00000037788.14, intron 4 of 4) protein_coding-intron (ENSMUSG00000037788.14, intron 4 of 4) 40502 ENSMUSG00000062190.12 ENSMUSG00000062190 ENSMUST00000153777 Lancl2 protein_coding Interval_65685 chr16 25333511 25333729 + 0 NA intron (ENSMUSG00000048399.4, intron 3 of 5) protein_coding-intron (ENSMUSG00000048399.4, intron 3 of 5) 46799 ENSMUSG00000048399.4 ENSMUSG00000048399 ENSMUST00000128595 Tprg protein_coding Interval_26501 chr11 58187361 58187764 + 0 NA promoter-TSS (ENSMUSG00000082292.3) processed_pseudogene-promoter-TSS (ENSMUSG00000082292.3) -177 ENSMUSG00000082292.3 ENSMUSG00000082292 ENSMUST00000119467 Gm12250 processed_pseudogene Interval_91494 chr2 39403623 39403812 + 0 NA Intergenic Intergenic 8304 ENSMUSG00000083401.1 ENSMUSG00000083401 ENSMUST00000120391 Gm13506 unprocessed_pseudogene Interval_61075 chr15 79083273 79083537 + 0 NA TTS (ENSMUSG00000033047.5) protein_coding-TTS (ENSMUSG00000033047.5) 356 ENSMUSG00000033047.5 ENSMUSG00000033047 ENSMUST00000230032 Eif3l protein_coding Interval_120385 chr4 148243393 148243791 + 0 NA intron (ENSMUSG00000041544.11, intron 18 of 20) protein_coding-intron (ENSMUSG00000041544.11, intron 18 of 20) 17159 ENSMUSG00000041544.11 ENSMUSG00000041544 ENSMUST00000129734 Disp3 protein_coding Interval_42191 chr13 9702093 9702854 + 0 NA intron (ENSMUSG00000021156.17, intron 2 of 11) protein_coding-intron (ENSMUSG00000021156.17, intron 3 of 13) 18180 ENSMUSG00000114138.1 ENSMUSG00000114138 ENSMUST00000222421 Gm36423 antisense Interval_45436 chr13 55161076 55162481 + 0 NA intron (ENSMUSG00000005320.9, intron 11 of 17) protein_coding-intron (ENSMUSG00000005320.9, intron 11 of 17) 6095 ENSMUSG00000005320.9 ENSMUSG00000005320 ENSMUST00000162167 Fgfr4 protein_coding Interval_159537 chr8 95319804 95321498 + 0 NA TTS (ENSMUSG00000090206.8) protein_coding-TTS (ENSMUSG00000090206.8) 9049 ENSMUSG00000090206.8 ENSMUSG00000090206 ENSMUST00000162294 Tepp protein_coding Interval_97446 chr2 136557941 136558419 + 0 NA intron (ENSMUSG00000074771.10, intron 11 of 11) protein_coding-intron (ENSMUSG00000074771.10, intron 11 of 11) 42665 ENSMUSG00000074771.10 ENSMUSG00000074771 ENSMUST00000138967 Ankef1 protein_coding Interval_13985 chr10 25279091 25279900 + 0 NA exon (ENSMUSG00000039166.16, exon 5 of 5) protein_coding-exon (ENSMUSG00000039166.16, exon 5 of 5) 2357 ENSMUSG00000089048.1 ENSMUSG00000089048 ENSMUST00000158423 Gm26167 misc_RNA Interval_15535 chr10 50891885 50892968 + 0 NA Intergenic Intergenic -2328 ENSMUSG00000019913.4 ENSMUSG00000019913 ENSMUST00000020071 Sim1 protein_coding Interval_132101 chr5 142767790 142770019 + 0 NA intron (ENSMUSG00000039477.16, intron 7 of 24) protein_coding-intron (ENSMUSG00000039477.16, intron 10 of 15) -2882 ENSMUSG00000039477.16 ENSMUSG00000039477 ENSMUST00000198181 Tnrc18 protein_coding Interval_21323 chr10 127962038 127963026 + 0 NA TTS (ENSMUSG00000112446.1) processed_pseudogene-TTS (ENSMUSG00000112446.1) 976 ENSMUSG00000112446.1 ENSMUSG00000112446 ENSMUST00000218406 Gm47949 processed_pseudogene Interval_76095 chr17 74921829 74922185 + 0 NA Intergenic Intergenic 28294 ENSMUSG00000117560.1 ENSMUSG00000117560 ENSMUST00000234897 Gm31759 lincRNA Interval_128188 chr5 111599625 111600344 + 0 NA intron (ENSMUSG00000052848.7, intron 1 of 2) lincRNA-intron (ENSMUSG00000052848.7, intron 1 of 2) 6368 ENSMUSG00000104833.1 ENSMUSG00000104833 ENSMUST00000198964 Gm42489 lincRNA Interval_92415 chr2 59620311 59620820 + 0 NA intron (ENSMUSG00000035168.16, intron 1 of 1) protein_coding-intron (ENSMUSG00000035168.16, intron 1 of 26) -55881 ENSMUSG00000081157.1 ENSMUSG00000081157 ENSMUST00000118837 Gm13552 processed_pseudogene Interval_22946 chr11 17852134 17854246 + 0 NA Intergenic Intergenic 100685 ENSMUSG00000016984.7 ENSMUSG00000016984 ENSMUST00000076661 Etaa1 protein_coding Interval_32836 chr11 111499879 111500073 + 0 NA Intergenic Intergenic 113330 ENSMUSG00000082448.1 ENSMUSG00000082448 ENSMUST00000120443 Gm11676 processed_pseudogene Interval_17987 chr10 81252191 81253485 + 0 NA promoter-TSS (ENSMUSG00000004933.17) protein_coding-promoter-TSS (ENSMUSG00000004933.17) 3787 ENSMUSG00000034949.18 ENSMUSG00000034949 ENSMUST00000148029 Zfr2 protein_coding Interval_83340 chr18 84385243 84385480 + 0 NA intron (ENSMUSG00000048410.17, intron 4 of 8) protein_coding-intron (ENSMUSG00000048410.17, intron 2 of 2) -9215 ENSMUSG00000102951.1 ENSMUSG00000102951 ENSMUST00000193817 Gm37216 TEC Interval_113771 chr4 58488682 58490712 + 0 NA intron (ENSMUSG00000038668.14, intron 3 of 3) protein_coding-intron (ENSMUSG00000038668.14, intron 2 of 3) -5872 ENSMUSG00000083834.1 ENSMUSG00000083834 ENSMUST00000119701 Gm12577 processed_pseudogene Interval_121321 chr4 154972570 154973027 + 0 NA intron (ENSMUSG00000029056.13, intron 6 of 15) protein_coding-intron (ENSMUSG00000029056.13, intron 9 of 18) 2799 ENSMUSG00000029056.13 ENSMUSG00000029056 ENSMUST00000129386 Pank4 protein_coding Interval_66196 chr16 32273315 32273587 + 0 NA intron (ENSMUSG00000046345.5, intron 2 of 2) protein_coding-intron (ENSMUSG00000046345.5, intron 2 of 2) 1983 ENSMUSG00000046345.5 ENSMUSG00000046345 ENSMUST00000093183 Smco1 protein_coding Interval_170068 chr9 104203777 104204334 + 0 NA promoter-TSS (ENSMUSG00000032560.14) protein_coding-promoter-TSS (ENSMUSG00000032560.14) -17120 ENSMUSG00000032560.14 ENSMUSG00000032560 ENSMUST00000189299 Dnajc13 protein_coding Interval_59918 chr15 61935045 61935261 + 0 NA Intergenic Intergenic 48149 ENSMUSG00000103610.1 ENSMUSG00000103610 ENSMUST00000192740 Gm37947 TEC Interval_78438 chr18 12866420 12867104 + 0 NA intron (ENSMUSG00000044252.18, intron 3 of 7) protein_coding-intron (ENSMUSG00000044252.18, intron 15 of 27) 4333 ENSMUSG00000117494.1 ENSMUSG00000117494 ENSMUST00000234213 Gm49970 antisense Interval_150266 chr7 109117084 109117386 + 0 NA Intergenic Intergenic -25652 ENSMUSG00000109107.1 ENSMUSG00000109107 ENSMUST00000208480 Gm44781 antisense Interval_169952 chr9 103163984 103165173 + 0 NA intron (ENSMUSG00000032549.7, intron 6 of 7) protein_coding-intron (ENSMUSG00000032549.7, intron 6 of 7) 27734 ENSMUSG00000032553.14 ENSMUSG00000032553 ENSMUST00000190760 Srprb protein_coding Interval_150312 chr7 109539419 109539829 + 0 NA intron (ENSMUSG00000031024.13, intron 9 of 10) protein_coding-intron (ENSMUSG00000031024.13, intron 9 of 19) 18344 ENSMUSG00000077575.1 ENSMUSG00000077575 ENSMUST00000104387 Gm24888 snoRNA Interval_99485 chr2 162315336 162315815 + 0 NA intron (ENSMUSG00000053141.16, intron 2 of 29) protein_coding-intron (ENSMUSG00000053141.16, intron 2 of 30) -75238 ENSMUSG00000084919.1 ENSMUSG00000084919 ENSMUST00000151688 Ptprtos antisense Interval_62071 chr15 86204035 86205536 + 0 NA Intergenic Intergenic 7872 ENSMUSG00000088071.1 ENSMUSG00000088071 ENSMUST00000157446 Gm22818 snRNA Interval_8423 chr1 139132421 139132652 + 0 NA intron (ENSMUSG00000056268.15, intron 2 of 9) protein_coding-intron (ENSMUSG00000056268.15, intron 13 of 20) 2129 ENSMUSG00000085481.1 ENSMUSG00000085481 ENSMUST00000129972 Gm16304 processed_pseudogene Interval_41128 chr12 111358046 111358265 + 0 NA intron (ENSMUSG00000021279.5, intron 2 of 4) protein_coding-intron (ENSMUSG00000021279.5, intron 1 of 36) -43618 ENSMUSG00000021279.5 ENSMUSG00000021279 ENSMUST00000222196 Cdc42bpb protein_coding Interval_25156 chr11 44610962 44611827 + 0 NA intron (ENSMUSG00000102563.1, intron 1 of 1) TEC-intron (ENSMUSG00000102563.1, intron 1 of 1) 5622 ENSMUSG00000102563.1 ENSMUSG00000102563 ENSMUST00000191765 Gm37695 TEC Interval_20991 chr10 123084519 123085131 + 0 NA Intergenic Intergenic -54506 ENSMUSG00000034602.15 ENSMUSG00000034602 ENSMUST00000219203 Mon2 protein_coding Interval_42612 chr13 16768966 16770498 + 0 NA Intergenic Intergenic 89740 ENSMUSG00000087872.1 ENSMUSG00000087872 ENSMUST00000157247 Gm26098 misc_RNA Interval_58428 chr15 34453024 34453985 + 0 NA exon (ENSMUSG00000044726.8, exon 1 of 3) protein_coding-exon (ENSMUSG00000044726.8, exon 1 of 3) 199 ENSMUSG00000044726.8 ENSMUSG00000044726 ENSMUST00000060894 Erich5 protein_coding Interval_137471 chr6 72649677 72650673 + 0 NA intron (ENSMUSG00000055799.13, intron 2 of 5) protein_coding-intron (ENSMUSG00000055799.13, intron 3 of 11) -2145 ENSMUSG00000102983.1 ENSMUSG00000102983 ENSMUST00000192767 Gm38320 TEC Interval_114036 chr4 62660178 62661792 + 0 NA intron (ENSMUSG00000059810.18, intron 4 of 9) protein_coding-intron (ENSMUSG00000059810.18, intron 10 of 15) -27273 ENSMUSG00000085177.1 ENSMUSG00000085177 ENSMUST00000130206 Gm11209 antisense Interval_54335 chr14 67772045 67772845 + 0 NA intron (ENSMUSG00000044447.5, intron 41 of 51) protein_coding-intron (ENSMUSG00000044447.5, intron 41 of 51) -7486 ENSMUSG00000044447.5 ENSMUSG00000044447 ENSMUST00000224823 Dock5 protein_coding Interval_2849 chr1 46425111 46426052 + 0 NA promoter-TSS (ENSMUSG00000101337.6) protein_coding-promoter-TSS (ENSMUSG00000101337.6) 11079 ENSMUSG00000101262.1 ENSMUSG00000101262 ENSMUST00000188705 Gm8326 processed_pseudogene Interval_133129 chr5 150055284 150056296 + 0 NA intron (ENSMUSG00000053368.13, intron 9 of 16) protein_coding-intron (ENSMUSG00000053368.13, intron 9 of 17) 27005 ENSMUSG00000107384.1 ENSMUSG00000107384 ENSMUST00000202037 Gm42557 antisense Interval_170064 chr9 104154885 104155977 + 0 NA intron (ENSMUSG00000032560.14, intron 2 of 3) protein_coding-intron (ENSMUSG00000032560.14, intron 55 of 55) 14380 ENSMUSG00000099773.1 ENSMUSG00000099773 ENSMUST00000185927 Hmgb1-rs16 processed_pseudogene Interval_31587 chr11 101541542 101541854 + 0 NA intron (ENSMUSG00000017146.12, intron 1 of 4) protein_coding-intron (ENSMUSG00000017146.12, intron 2 of 22) -16840 ENSMUSG00000017146.12 ENSMUSG00000017146 ENSMUST00000190862 Brca1 protein_coding Interval_169328 chr9 96447657 96447945 + 0 NA intron (ENSMUSG00000118397.1, intron 2 of 2) unitary_pseudogene-intron (ENSMUSG00000118397.1, intron 2 of 2) 1544 ENSMUSG00000118397.1 ENSMUSG00000118397 ENSMUST00000238558 Gm50488 unitary_pseudogene Interval_156232 chr8 46296067 46296501 + 0 NA Intergenic Intergenic -2847 ENSMUSG00000110179.1 ENSMUSG00000110179 ENSMUST00000210181 Gm39168 lincRNA Interval_55282 chr14 80170538 80171054 + 0 NA Intergenic Intergenic -44134 ENSMUSG00000115334.1 ENSMUSG00000115334 ENSMUST00000226677 Gm17923 processed_pseudogene Interval_111621 chr4 24704884 24706112 + 0 NA intron (ENSMUSG00000040387.16, intron 4 of 9) protein_coding-intron (ENSMUSG00000040387.16, intron 4 of 9) 38467 ENSMUSG00000040387.16 ENSMUSG00000040387 ENSMUST00000144062 Klhl32 protein_coding Interval_174604 chrX 159755533 159755755 + 0 NA intron (ENSMUSG00000040990.17, intron 1 of 16) protein_coding-intron (ENSMUSG00000040990.17, intron 2 of 19) -164215 ENSMUSG00000040990.17 ENSMUSG00000040990 ENSMUST00000130987 Sh3kbp1 protein_coding Interval_82426 chr18 73920035 73920339 + 0 NA Intergenic Intergenic 60800 ENSMUSG00000064036.15 ENSMUSG00000064036 ENSMUST00000134847 Mro protein_coding Interval_35704 chr12 28408508 28408715 + 0 NA Intergenic Intergenic 58348 ENSMUSG00000077792.1 ENSMUSG00000077792 ENSMUST00000104604 Gm25564 snoRNA Interval_84115 chr19 7294506 7296098 + 0 NA exon (ENSMUSG00000024969.15, exon 1 of 18) protein_coding-exon (ENSMUSG00000024969.15, exon 1 of 18) -2356 ENSMUSG00000091558.1 ENSMUSG00000091558 ENSMUST00000166590 Gm17227 antisense Interval_117203 chr4 120556508 120557124 + 0 NA intron (ENSMUSG00000028633.7, intron 7 of 18) protein_coding-intron (ENSMUSG00000028633.7, intron 7 of 18) -11749 ENSMUSG00000028633.7 ENSMUSG00000028633 ENSMUST00000140891 Ctps protein_coding Interval_123672 chr5 34430237 34430555 + 0 NA promoter-TSS (ENSMUSG00000037210.16) protein_coding-promoter-TSS (ENSMUSG00000037210.16) -823 ENSMUSG00000037210.16 ENSMUSG00000037210 ENSMUST00000181379 Fam193a protein_coding Interval_55624 chr14 96404938 96405486 + 0 NA intron (ENSMUSG00000022076.10, intron 1 of 10) protein_coding-intron (ENSMUSG00000022076.10, intron 1 of 10) -39743 ENSMUSG00000065042.1 ENSMUSG00000065042 ENSMUST00000083108 Gm24043 snRNA Interval_38167 chr12 76117616 76117870 + 0 NA Intergenic Intergenic 34884 ENSMUSG00000046580.10 ENSMUSG00000046580 ENSMUST00000121461 Gm7862 processed_pseudogene Interval_956 chr1 13435575 13435900 + 0 NA Intergenic Intergenic -28082 ENSMUSG00000101171.1 ENSMUSG00000101171 ENSMUST00000187246 Gm7593 processed_pseudogene Interval_111427 chr4 21568038 21568286 + 0 NA Intergenic Intergenic -58218 ENSMUSG00000083654.1 ENSMUSG00000083654 ENSMUST00000118187 Gm11875 processed_pseudogene Interval_678 chr1 9817228 9817748 + 0 NA intron (ENSMUSG00000025915.14, intron 1 of 16) protein_coding-intron (ENSMUSG00000025915.14, intron 1 of 16) -14935 ENSMUSG00000046334.4 ENSMUSG00000046334 ENSMUST00000063059 Gm6195 processed_pseudogene Interval_23351 chr11 21690979 21691285 + 0 NA intron (ENSMUSG00000020319.9, intron 1 of 2) protein_coding-intron (ENSMUSG00000020319.9, intron 7 of 17) -3997 ENSMUSG00000020319.9 ENSMUSG00000020319 ENSMUST00000128794 Wdpcp protein_coding Interval_13083 chr10 11229155 11230365 + 0 NA Intergenic Intergenic -16781 ENSMUSG00000090070.1 ENSMUSG00000090070 ENSMUST00000161579 Gm16577 antisense Interval_84496 chr19 11880173 11880465 + 0 NA Intergenic Intergenic -1961 ENSMUSG00000051548.4 ENSMUSG00000051548 ENSMUST00000054711 Gm6365 processed_pseudogene Interval_103469 chr3 41898421 41899121 + 0 NA Intergenic Intergenic -77564 ENSMUSG00000102972.1 ENSMUSG00000102972 ENSMUST00000193104 Gm37348 processed_pseudogene Interval_100555 chr2 170109328 170110168 + 0 NA exon (ENSMUSG00000052056.14, exon 6 of 6) protein_coding-exon (ENSMUSG00000052056.14, exon 6 of 6) 38355 ENSMUSG00000052056.14 ENSMUSG00000052056 ENSMUST00000149318 Zfp217 protein_coding Interval_142405 chr6 141623096 141623355 + 0 NA Intergenic Intergenic -11233 ENSMUSG00000030236.10 ENSMUSG00000030236 ENSMUST00000160179 Slco1b2 protein_coding Interval_34598 chr12 6595423 6596244 + 0 NA Intergenic Intergenic -97218 ENSMUSG00000111967.1 ENSMUSG00000111967 ENSMUST00000218888 Gm3678 processed_pseudogene Interval_141102 chr6 124998493 125000013 + 0 NA promoter-TSS (ENSMUSG00000030329.11) protein_coding-promoter-TSS (ENSMUSG00000030329.11) 816 ENSMUSG00000030329.11 ENSMUSG00000030329 ENSMUST00000160666 Pianp protein_coding Interval_97371 chr2 135544742 135545170 + 0 NA intron (ENSMUSG00000085631.1, intron 1 of 1) antisense-intron (ENSMUSG00000085631.1, intron 1 of 1) 38628 ENSMUSG00000085631.1 ENSMUSG00000085631 ENSMUST00000129868 9630028H03Rik antisense Interval_44639 chr13 46869780 46870305 + 0 NA intron (ENSMUSG00000021375.11, intron 2 of 2) protein_coding-intron (ENSMUSG00000021375.11, intron 2 of 37) -10985 ENSMUSG00000114917.1 ENSMUSG00000114917 ENSMUST00000225017 Gm48250 antisense Interval_116621 chr4 116134388 116135386 + 0 NA exon (ENSMUSG00000028701.4, exon 2 of 2) protein_coding-exon (ENSMUSG00000028701.4, exon 2 of 2) -11905 ENSMUSG00000028702.15 ENSMUSG00000028702 ENSMUST00000143089 Rad54l protein_coding Interval_114579 chr4 82673668 82673870 + 0 NA intron (ENSMUSG00000008575.17, intron 1 of 1) protein_coding-intron (ENSMUSG00000008575.17, intron 1 of 1) -19036 ENSMUSG00000086293.1 ENSMUSG00000086293 ENSMUST00000157011 Gm11269 antisense Interval_170706 chr9 110205553 110206391 + 0 NA intron (ENSMUSG00000032481.17, intron 23 of 24) protein_coding-intron (ENSMUSG00000032481.17, intron 23 of 27) -30422 ENSMUSG00000032481.17 ENSMUSG00000032481 ENSMUST00000200426 Smarcc1 protein_coding Interval_22138 chr11 6568933 6570418 + 0 NA intron (ENSMUSG00000000378.15, intron 2 of 9) protein_coding-intron (ENSMUSG00000000378.15, intron 1 of 9) -10172 ENSMUSG00000084231.1 ENSMUSG00000084231 ENSMUST00000118772 Gm11975 processed_pseudogene Interval_73848 chr17 44587855 44588581 + 0 NA intron (ENSMUSG00000039153.17, intron 6 of 6) protein_coding-intron (ENSMUSG00000039153.17, intron 5 of 5) 26228 ENSMUSG00000090048.1 ENSMUSG00000090048 ENSMUST00000160203 Runx2os3 antisense Interval_141372 chr6 127766744 127770278 + 0 NA intron (ENSMUSG00000107219.1, intron 1 of 1) protein_coding-intron (ENSMUSG00000030350.8, intron 1 of 9) 961 ENSMUSG00000030350.8 ENSMUSG00000030350 ENSMUST00000032500 Prmt8 protein_coding Interval_76380 chr17 79752594 79753139 + 0 NA Intergenic Intergenic 18992 ENSMUSG00000117426.1 ENSMUSG00000117426 ENSMUST00000234743 Gm33055 lincRNA Interval_151141 chr7 118787637 118788984 + 0 NA intron (ENSMUSG00000030982.19, intron 14 of 29) protein_coding-intron (ENSMUSG00000030982.19, intron 7 of 23) 3167 ENSMUSG00000109379.1 ENSMUSG00000109379 ENSMUST00000207311 Gm44550 TEC Interval_136940 chr6 64964075 64964590 + 0 NA Intergenic Intergenic -14183 ENSMUSG00000107783.1 ENSMUSG00000107783 ENSMUST00000203952 Gm44038 processed_pseudogene Interval_57968 chr15 25784291 25784577 + 0 NA intron (ENSMUSG00000022272.17, intron 26 of 40) protein_coding-intron (ENSMUSG00000022272.17, intron 6 of 20) 15878 ENSMUSG00000022272.17 ENSMUSG00000022272 ENSMUST00000145587 Myo10 protein_coding Interval_60194 chr15 67272038 67272508 + 0 NA intron (ENSMUSG00000102069.1, intron 4 of 8) lincRNA-intron (ENSMUSG00000102069.1, intron 4 of 8) 45504 ENSMUSG00000102069.1 ENSMUSG00000102069 ENSMUST00000187233 1700012I11Rik lincRNA Interval_35400 chr12 21350310 21351257 + 0 NA intron (ENSMUSG00000052593.16, intron 3 of 15) protein_coding-intron (ENSMUSG00000052593.16, intron 4 of 18) -3571 ENSMUSG00000088997.1 ENSMUSG00000088997 ENSMUST00000158372 Gm22766 snRNA Interval_104016 chr3 57309254 57309544 + 0 NA Intergenic Intergenic -14847 ENSMUSG00000027800.14 ENSMUSG00000027800 ENSMUST00000196704 Tm4sf1 protein_coding Interval_38494 chr12 79548423 79549155 + 0 NA intron (ENSMUSG00000059060.15, intron 1 of 2) protein_coding-intron (ENSMUSG00000059060.15, intron 7 of 10) 221436 ENSMUSG00000059060.15 ENSMUSG00000059060 ENSMUST00000221257 Rad51b protein_coding Interval_36063 chr12 34874477 34874708 + 0 NA exon (ENSMUSG00000052376.2, exon 1 of 1) TEC-exon (ENSMUSG00000052376.2, exon 1 of 1) 236 ENSMUSG00000052376.2 ENSMUSG00000052376 ENSMUST00000061679 4921508M14Rik TEC Interval_68412 chr16 76183127 76183409 + 0 NA Intergenic Intergenic 38283 ENSMUSG00000098089.2 ENSMUSG00000098089 ENSMUST00000183080 Gm26915 processed_pseudogene Interval_102724 chr3 30601016 30603115 + 0 NA promoter-TSS (ENSMUSG00000037730.13) protein_coding-promoter-TSS (ENSMUSG00000037730.13) -579 ENSMUSG00000037730.13 ENSMUSG00000037730 ENSMUST00000193736 Mynn protein_coding Interval_37445 chr12 68897661 68897912 + 0 NA intron (ENSMUSG00000113320.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000113320.1, intron 1 of 1) -72784 ENSMUSG00000113098.1 ENSMUSG00000113098 ENSMUST00000223472 Gm2912 lincRNA Interval_16922 chr10 69910375 69911072 + 0 NA intron (ENSMUSG00000069601.14, intron 24 of 42) protein_coding-intron (ENSMUSG00000069601.14, intron 1 of 16) -264288 ENSMUSG00000048701.13 ENSMUSG00000048701 ENSMUST00000135607 Ccdc6 protein_coding Interval_148836 chr7 89188387 89188921 + 0 NA intron (ENSMUSG00000039428.11, intron 4 of 5) protein_coding-intron (ENSMUSG00000039428.11, intron 6 of 14) 28443 ENSMUSG00000109576.1 ENSMUSG00000109576 ENSMUST00000208963 Gm44704 TEC Interval_161621 chr8 121612363 121612656 + 0 NA intron (ENSMUSG00000061410.6, intron 2 of 5) protein_coding-intron (ENSMUSG00000061410.6, intron 3 of 12) -7995 ENSMUSG00000061410.6 ENSMUSG00000061410 ENSMUST00000134212 Zcchc14 protein_coding Interval_54591 chr14 70893974 70894536 + 0 NA intron (ENSMUSG00000022103.10, intron 1 of 6) protein_coding-intron (ENSMUSG00000022103.10, intron 1 of 8) 3727 ENSMUSG00000022103.10 ENSMUSG00000022103 ENSMUST00000227633 Gfra2 protein_coding Interval_2426 chr1 39237616 39238220 + 0 NA intron (ENSMUSG00000026077.15, intron 1 of 20) protein_coding-intron (ENSMUSG00000026077.15, intron 1 of 20) 38647 ENSMUSG00000092553.1 ENSMUSG00000092553 ENSMUST00000174365 Gm20428 processed_pseudogene Interval_56430 chr14 118691474 118691925 + 0 NA intron (ENSMUSG00000032849.14, intron 1 of 29) protein_coding-intron (ENSMUSG00000032849.14, intron 1 of 30) 7793 ENSMUSG00000032849.14 ENSMUSG00000032849 ENSMUST00000227480 Abcc4 protein_coding Interval_141249 chr6 126531331 126531652 + 0 NA Intergenic Intergenic 3921 ENSMUSG00000045534.4 ENSMUSG00000045534 ENSMUST00000060972 Kcna5 protein_coding Interval_25844 chr11 52098207 52099663 + 0 NA TTS (ENSMUSG00000093006.2) miRNA-TTS (ENSMUSG00000093006.2) 218 ENSMUSG00000093006.2 ENSMUSG00000093006 ENSMUST00000175265 Gm24157 miRNA Interval_12687 chr10 4325106 4326170 + 0 NA intron (ENSMUSG00000038587.10, intron 2 of 3) protein_coding-intron (ENSMUSG00000038587.10, intron 2 of 3) -8907 ENSMUSG00000038587.10 ENSMUSG00000038587 ENSMUST00000215696 Akap12 protein_coding Interval_69830 chr16 97258825 97259106 + 0 NA Intergenic Intergenic -146304 ENSMUSG00000116686.1 ENSMUSG00000116686 ENSMUST00000232315 Gm49681 processed_pseudogene Interval_86547 chr19 41613296 41613696 + 0 NA intron (ENSMUSG00000025020.11, intron 28 of 35) protein_coding-intron (ENSMUSG00000025020.11, intron 28 of 36) 24845 ENSMUSG00000098286.1 ENSMUSG00000098286 ENSMUST00000183602 Mir8091 miRNA Interval_51533 chr14 29932268 29932872 + 0 NA Intergenic Intergenic 28811 ENSMUSG00000114424.1 ENSMUSG00000114424 ENSMUST00000223774 Gm47414 lincRNA Interval_64400 chr16 11114532 11114756 + 0 NA exon (ENSMUSG00000022498.16, exon 4 of 4) protein_coding-exon (ENSMUSG00000022498.16, exon 4 of 4) 19909 ENSMUSG00000022498.16 ENSMUSG00000022498 ENSMUST00000118679 Txndc11 protein_coding Interval_87430 chr19 50258874 50259320 + 0 NA intron (ENSMUSG00000043531.16, intron 8 of 25) protein_coding-intron (ENSMUSG00000043531.16, intron 9 of 26) 112159 ENSMUSG00000110007.2 ENSMUSG00000110007 ENSMUST00000210140 Gm45352 antisense Interval_113062 chr4 47351627 47353970 + 0 NA promoter-TSS (ENSMUSG00000007613.15) protein_coding-promoter-TSS (ENSMUSG00000007613.15) -812 ENSMUSG00000007613.15 ENSMUSG00000007613 ENSMUST00000107725 Tgfbr1 protein_coding Interval_74479 chr17 51694949 51695946 + 0 NA Intergenic Intergenic 53237 ENSMUSG00000102973.1 ENSMUSG00000102973 ENSMUST00000194215 E430014B02Rik TEC Interval_70844 chr17 15308992 15309326 + 0 NA Intergenic Intergenic 12723 ENSMUSG00000116647.1 ENSMUSG00000116647 ENSMUST00000232519 Gm7423 processed_pseudogene Interval_9072 chr1 153413363 153415555 + 0 NA promoter-TSS (ENSMUSG00000073538.10) processed_transcript-promoter-TSS (ENSMUSG00000073538.10) -226 ENSMUSG00000073538.10 ENSMUSG00000073538 ENSMUST00000188717 E330020D12Rik processed_transcript Interval_101892 chr3 10439344 10440420 + 0 NA intron (ENSMUSG00000027534.16, intron 1 of 3) protein_coding-intron (ENSMUSG00000027534.16, intron 1 of 7) 218 ENSMUSG00000027534.16 ENSMUSG00000027534 ENSMUST00000195822 Snx16 protein_coding Interval_135690 chr6 43413802 43414014 + 0 NA intron (ENSMUSG00000029735.17, intron 6 of 6) protein_coding-intron (ENSMUSG00000029735.17, intron 8 of 8) 40103 ENSMUSG00000084325.2 ENSMUSG00000084325 ENSMUST00000120824 Gm15550 processed_pseudogene Interval_24355 chr11 32633649 32635098 + 0 NA Intergenic Intergenic -8531 ENSMUSG00000020271.17 ENSMUSG00000020271 ENSMUST00000143290 Fbxw11 protein_coding Interval_18815 chr10 91102973 91103415 + 0 NA TTS (ENSMUSG00000019975.12) protein_coding-TTS (ENSMUSG00000019975.12) 2764 ENSMUSG00000019975.12 ENSMUSG00000019975 ENSMUST00000211056 Ikbip protein_coding Interval_55510 chr14 89688407 89688688 + 0 NA Intergenic Intergenic -18258 ENSMUSG00000077408.1 ENSMUSG00000077408 ENSMUST00000104220 Gm25415 snoRNA Interval_69019 chr16 90157337 90157649 + 0 NA Intergenic Intergenic -5687 ENSMUSG00000116553.1 ENSMUSG00000116553 ENSMUST00000231626 Gm7307 processed_pseudogene Interval_166966 chr9 64198105 64200281 + 0 NA intron (ENSMUSG00000004936.8, intron 5 of 10) protein_coding-intron (ENSMUSG00000004936.8, intron 5 of 10) -10937 ENSMUSG00000004936.8 ENSMUSG00000004936 ENSMUST00000152535 Map2k1 protein_coding Interval_137006 chr6 66023048 66023275 + 0 NA Intergenic Intergenic 27524 ENSMUSG00000108100.1 ENSMUSG00000108100 ENSMUST00000203735 Gm5876 processed_pseudogene Interval_71625 chr17 24950509 24952312 + 0 NA intron (ENSMUSG00000024165.9, intron 1 of 3) protein_coding-intron (ENSMUSG00000024165.9, intron 2 of 4) 9235 ENSMUSG00000024165.9 ENSMUSG00000024165 ENSMUST00000233481 Jpt2 protein_coding Interval_7998 chr1 135139892 135140381 + 0 NA TTS (ENSMUSG00000031506.11) protein_coding-TTS (ENSMUSG00000031506.11) 6828 ENSMUSG00000031506.11 ENSMUSG00000031506 ENSMUST00000167080 Ptpn7 protein_coding Interval_44401 chr13 44636296 44636658 + 0 NA Intergenic Intergenic 14295 ENSMUSG00000113730.1 ENSMUSG00000113730 ENSMUST00000221956 Gm47805 lincRNA Interval_72894 chr17 33007962 33009576 + 0 NA Intergenic Intergenic 15568 ENSMUSG00000053390.16 ENSMUSG00000053390 ENSMUST00000157017 Zfp952 protein_coding Interval_63715 chr15 103005148 103006030 + 0 NA intron (ENSMUSG00000001661.5, intron 1 of 1) protein_coding-intron (ENSMUSG00000001661.5, intron 1 of 2) 5060 ENSMUSG00000001661.5 ENSMUSG00000001661 ENSMUST00000001711 Hoxc6 protein_coding Interval_118815 chr4 133849515 133849882 + 0 NA TTS (ENSMUSG00000003644.17) protein_coding-TTS (ENSMUSG00000003644.17) -22784 ENSMUSG00000085009.1 ENSMUSG00000085009 ENSMUST00000134799 Gm12977 antisense Interval_590 chr1 8358146 8358579 + 0 NA Intergenic Intergenic 95129 ENSMUSG00000102647.1 ENSMUSG00000102647 ENSMUST00000192338 Gm38024 TEC Interval_66136 chr16 31893580 31893961 + 0 NA intron (ENSMUSG00000022780.5, intron 13 of 15) protein_coding-intron (ENSMUSG00000022780.5, intron 13 of 15) 14960 ENSMUSG00000022780.5 ENSMUSG00000022780 ENSMUST00000023464 Meltf protein_coding Interval_42899 chr13 21224884 21225621 + 0 NA Intergenic Intergenic -37696 ENSMUSG00000113104.1 ENSMUSG00000113104 ENSMUST00000220690 Gm47806 antisense Interval_79947 chr18 36159927 36160792 + 0 NA intron (ENSMUSG00000060275.14, intron 1 of 9) protein_coding-intron (ENSMUSG00000060275.14, intron 2 of 7) 54708 ENSMUSG00000117852.1 ENSMUSG00000117852 ENSMUST00000235667 4930471G03Rik antisense Interval_74018 chr17 46080456 46082274 + 0 NA intron (ENSMUSG00000117287.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000117287.1, intron 1 of 2) 2901 ENSMUSG00000117287.1 ENSMUSG00000117287 ENSMUST00000233284 Gm36200 lincRNA Interval_82682 chr18 75889956 75892341 + 0 NA intron (ENSMUSG00000044646.15, intron 1 of 5) protein_coding-intron (ENSMUSG00000044646.15, intron 1 of 4) 70933 ENSMUSG00000044646.15 ENSMUSG00000044646 ENSMUST00000167921 Zbtb7c protein_coding Interval_53985 chr14 64100486 64100729 + 0 NA intron (ENSMUSG00000091686.1, intron 3 of 3) lincRNA-intron (ENSMUSG00000091686.1, intron 3 of 3) 3628 ENSMUSG00000091686.1 ENSMUSG00000091686 ENSMUST00000166038 4930471C04Rik lincRNA Interval_165313 chr9 46202187 46202477 + 0 NA exon (ENSMUSG00000034135.15, exon 13 of 13) protein_coding-exon (ENSMUSG00000034135.15, exon 13 of 13) -26389 ENSMUSG00000032083.8 ENSMUSG00000032083 ENSMUST00000132155 Apoa1 protein_coding Interval_131003 chr5 134499965 134500751 + 0 NA intron (ENSMUSG00000063146.11, intron 10 of 16) protein_coding-intron (ENSMUSG00000063146.11, intron 9 of 15) -14912 ENSMUSG00000106802.1 ENSMUSG00000106802 ENSMUST00000200763 Gm42885 TEC Interval_63123 chr15 99214829 99217022 + 0 NA Intergenic Intergenic -21980 ENSMUSG00000037579.7 ENSMUSG00000037579 ENSMUST00000230552 Kcnh3 protein_coding Interval_170491 chr9 108296034 108297429 + 0 NA promoter-TSS (ENSMUSG00000032607.12) protein_coding-promoter-TSS (ENSMUSG00000032607.12) -179 ENSMUSG00000032607.12 ENSMUSG00000032607 ENSMUST00000160675 Amt protein_coding Interval_26584 chr11 59051201 59051844 + 0 NA intron (ENSMUSG00000061462.18, intron 55 of 114) protein_coding-intron (ENSMUSG00000061462.18, intron 55 of 89) 48612 ENSMUSG00000072902.4 ENSMUSG00000072902 ENSMUST00000101162 Gm10435 antisense Interval_118685 chr4 133196554 133196826 + 0 NA TTS (ENSMUSG00000028868.13) protein_coding-TTS (ENSMUSG00000028868.13) 1035 ENSMUSG00000099202.1 ENSMUSG00000099202 ENSMUST00000184894 Mir7017 miRNA Interval_137341 chr6 71527096 71528454 + 0 NA Intergenic Intergenic 13963 ENSMUSG00000108278.1 ENSMUSG00000108278 ENSMUST00000204222 Gm44194 TEC Interval_40632 chr12 106128631 106128923 + 0 NA Intergenic Intergenic 16623 ENSMUSG00000114149.1 ENSMUSG00000114149 ENSMUST00000223462 Gm47646 lincRNA Interval_71865 chr17 26602304 26602707 + 0 NA intron (ENSMUSG00000001576.15, intron 1 of 11) protein_coding-intron (ENSMUSG00000001576.15, intron 1 of 8) 281 ENSMUSG00000001576.15 ENSMUSG00000001576 ENSMUST00000236163 Ergic1 protein_coding Interval_48187 chr13 97067086 97067918 + 0 NA intron (ENSMUSG00000041817.14, intron 1 of 12) protein_coding-intron (ENSMUSG00000041817.14, intron 1 of 12) 216 ENSMUSG00000041817.14 ENSMUSG00000041817 ENSMUST00000042517 Fam169a protein_coding Interval_112065 chr4 33923355 33925295 + 0 NA promoter-TSS (ENSMUSG00000044288.6) protein_coding-promoter-TSS (ENSMUSG00000044288.6) -268 ENSMUSG00000044288.6 ENSMUSG00000044288 ENSMUST00000084736 Cnr1 protein_coding Interval_167542 chr9 70325030 70325277 + 0 NA intron (ENSMUSG00000032220.10, intron 8 of 17) protein_coding-intron (ENSMUSG00000032220.10, intron 8 of 27) 80600 ENSMUSG00000093763.1 ENSMUSG00000093763 ENSMUST00000176002 Mir5626 miRNA Interval_46877 chr13 73009361 73010162 + 0 NA Intergenic Intergenic -192998 ENSMUSG00000113082.1 ENSMUSG00000113082 ENSMUST00000223149 D730050B12Rik lincRNA Interval_108795 chr3 131298889 131299421 + 0 NA intron (ENSMUSG00000027983.13, intron 1 of 3) protein_coding-intron (ENSMUSG00000027983.13, intron 1 of 4) -3488 ENSMUSG00000097761.1 ENSMUSG00000097761 ENSMUST00000181438 4930534D22Rik antisense Interval_94118 chr2 84454209 84455606 + 0 NA intron (ENSMUSG00000027082.15, intron 1 of 5) protein_coding-intron (ENSMUSG00000027082.15, intron 3 of 8) 3203 ENSMUSG00000027082.15 ENSMUSG00000027082 ENSMUST00000144775 Tfpi protein_coding Interval_117431 chr4 123644456 123645712 + 0 NA intron (ENSMUSG00000028649.21, intron 1 of 97) protein_coding-intron (ENSMUSG00000028649.21, intron 1 of 92) 14789 ENSMUSG00000081585.1 ENSMUSG00000081585 ENSMUST00000121158 Gm12926 processed_pseudogene Interval_89459 chr2 20775683 20776497 + 0 NA intron (ENSMUSG00000036617.17, intron 4 of 7) protein_coding-intron (ENSMUSG00000036617.17, intron 9 of 18) -62856 ENSMUSG00000086418.1 ENSMUSG00000086418 ENSMUST00000137186 Gm13362 antisense Interval_174172 chrX 137117951 137120631 + 0 NA intron (ENSMUSG00000023443.13, intron 2 of 2) protein_coding-intron (ENSMUSG00000023443.13, intron 2 of 4) 2792 ENSMUSG00000023443.13 ENSMUSG00000023443 ENSMUST00000155283 Esx1 protein_coding Interval_131319 chr5 136403323 136404132 + 0 NA intron (ENSMUSG00000086220.1, intron 3 of 4) protein_coding-intron (ENSMUSG00000029705.17, intron 3 of 23) -27924 ENSMUSG00000106479.1 ENSMUSG00000106479 ENSMUST00000200230 Mir721 miRNA Interval_43472 chr13 31659037 31659610 + 0 NA Intergenic Intergenic -32780 ENSMUSG00000098266.1 ENSMUSG00000098266 ENSMUST00000184237 Gm27516 miRNA Interval_19551 chr10 103029835 103030416 + 0 NA promoter-TSS (ENSMUSG00000036602.14) protein_coding-promoter-TSS (ENSMUSG00000036602.14) 219 ENSMUSG00000090638.1 ENSMUSG00000090638 ENSMUST00000170026 Gm17028 lincRNA Interval_161375 chr8 120038993 120039736 + 0 NA intron (ENSMUSG00000089776.1, intron 1 of 1) protein_coding-intron (ENSMUSG00000031825.16, intron 13 of 14) 5923 ENSMUSG00000089776.1 ENSMUSG00000089776 ENSMUST00000160605 Gm15684 antisense Interval_88762 chr2 10364985 10365884 + 0 NA intron (ENSMUSG00000086748.1, intron 1 of 3) processed_transcript-intron (ENSMUSG00000086748.1, intron 1 of 3) -7014 ENSMUSG00000061186.15 ENSMUSG00000061186 ENSMUST00000041105 Sfmbt2 protein_coding Interval_140378 chr6 117662903 117663131 + 0 NA intron (ENSMUSG00000099869.6, intron 2 of 3) lincRNA-intron (ENSMUSG00000099869.6, intron 3 of 4) -50447 ENSMUSG00000107785.1 ENSMUSG00000107785 ENSMUST00000205216 Gm45083 lincRNA Interval_19830 chr10 109852514 109853400 + 0 NA exon (ENSMUSG00000020181.18, exon 8 of 39) protein_coding-exon (ENSMUSG00000020181.18, exon 8 of 39) 184822 ENSMUSG00000102410.1 ENSMUSG00000102410 ENSMUST00000192526 Gm36935 TEC Interval_103095 chr3 35242116 35243633 + 0 NA Intergenic Intergenic 33257 ENSMUSG00000105651.1 ENSMUSG00000105651 ENSMUST00000198307 1700017M07Rik lincRNA Interval_109344 chr3 139308398 139308890 + 0 NA intron (ENSMUSG00000047940.13, intron 8 of 13) protein_coding-intron (ENSMUSG00000047940.13, intron 8 of 13) 102950 ENSMUSG00000047940.13 ENSMUSG00000047940 ENSMUST00000062306 Stpg2 protein_coding Interval_162034 chr8 124608051 124608839 + 0 NA intron (ENSMUSG00000031981.7, intron 12 of 19) protein_coding-intron (ENSMUSG00000031981.7, intron 12 of 19) -4995 ENSMUSG00000031981.7 ENSMUSG00000031981 ENSMUST00000133583 Capn9 protein_coding Interval_33418 chr11 116453803 116455141 + 0 NA promoter-TSS (ENSMUSG00000070331.14) protein_coding-promoter-TSS (ENSMUSG00000070331.14) 11769 ENSMUSG00000070331.14 ENSMUSG00000070331 ENSMUST00000140697 Qrich2 protein_coding Interval_89954 chr2 26811793 26813164 + 0 NA Intergenic Intergenic 44320 ENSMUSG00000015787.15 ENSMUSG00000015787 ENSMUST00000102900 Abo protein_coding Interval_73453 chr17 37406134 37406334 + 0 NA exon (ENSMUSG00000063188.4, exon 1 of 1) protein_coding-exon (ENSMUSG00000063188.4, exon 1 of 1) 2299 ENSMUSG00000092568.2 ENSMUSG00000092568 ENSMUST00000174238 Olfr759-ps1 unprocessed_pseudogene Interval_83101 chr18 81295954 81296620 + 0 NA intron (ENSMUSG00000117717.1, intron 3 of 4) lincRNA-intron (ENSMUSG00000117717.1, intron 3 of 4) 31596 ENSMUSG00000117717.1 ENSMUSG00000117717 ENSMUST00000236674 Gm30192 lincRNA Interval_156457 chr8 48410515 48411099 + 0 NA intron (ENSMUSG00000031561.16, intron 1 of 2) protein_coding-intron (ENSMUSG00000031561.16, intron 3 of 28) -139822 ENSMUSG00000110480.1 ENSMUSG00000110480 ENSMUST00000212653 Gm32842 processed_pseudogene Interval_162301 chr8 126903082 126903998 + 0 NA intron (ENSMUSG00000110697.1, intron 1 of 4) lincRNA-intron (ENSMUSG00000110697.1, intron 1 of 4) 4675 ENSMUSG00000110697.1 ENSMUSG00000110697 ENSMUST00000212639 Gm31718 lincRNA Interval_169780 chr9 101216300 101216669 + 0 NA intron (ENSMUSG00000043154.15, intron 1 of 13) protein_coding-intron (ENSMUSG00000043154.15, intron 1 of 13) -4647 ENSMUSG00000043154.15 ENSMUSG00000043154 ENSMUST00000191226 Ppp2r3a protein_coding Interval_51224 chr14 25277534 25278318 + 0 NA intron (ENSMUSG00000087535.2, intron 2 of 3) antisense-intron (ENSMUSG00000087535.2, intron 2 of 3) 101683 ENSMUSG00000097601.2 ENSMUSG00000097601 ENSMUST00000181582 Gm26660 lincRNA Interval_164955 chr9 43350212 43350725 + 0 NA Intergenic Intergenic -26157 ENSMUSG00000110823.1 ENSMUSG00000110823 ENSMUST00000216190 Gm36799 lincRNA Interval_96989 chr2 130291400 130291906 + 0 NA Intergenic Intergenic -4286 ENSMUSG00000053552.14 ENSMUSG00000053552 ENSMUST00000110287 Ebf4 protein_coding Interval_58295 chr15 31928181 31928395 + 0 NA Intergenic Intergenic -121663 ENSMUSG00000115561.1 ENSMUSG00000115561 ENSMUST00000227417 Gm49285 TEC Interval_32151 chr11 105652760 105652990 + 0 NA intron (ENSMUSG00000053580.16, intron 2 of 4) protein_coding-intron (ENSMUSG00000053580.16, intron 2 of 25) -20547 ENSMUSG00000053580.16 ENSMUSG00000053580 ENSMUST00000147975 Tanc2 protein_coding Interval_152841 chr7 138662779 138663105 + 0 NA Intergenic Intergenic -37961 ENSMUSG00000109802.1 ENSMUSG00000109802 ENSMUST00000211166 Gm30808 lincRNA Interval_101117 chr2 178089601 178090107 + 0 NA Intergenic Intergenic -11429 ENSMUSG00000078861.8 ENSMUSG00000078861 ENSMUST00000108923 Zfp931 protein_coding Interval_70529 chr17 11578059 11578227 + 0 NA intron (ENSMUSG00000023826.16, intron 5 of 10) protein_coding-intron (ENSMUSG00000023826.16, intron 3 of 3) -32345 ENSMUSG00000099618.1 ENSMUSG00000099618 ENSMUST00000185957 Gm28118 processed_pseudogene Interval_93664 chr2 75673664 75674920 + 0 NA Intergenic Intergenic 12546 ENSMUSG00000089015.1 ENSMUSG00000089015 ENSMUST00000158390 Gm24996 snRNA Interval_146869 chr7 54108683 54108895 + 0 NA Intergenic Intergenic -100209 ENSMUSG00000099089.1 ENSMUSG00000099089 ENSMUST00000183968 Gm27921 miRNA Interval_163934 chr9 29225625 29226638 + 0 NA intron (ENSMUSG00000059974.10, intron 2 of 2) protein_coding-intron (ENSMUSG00000059974.10, intron 2 of 7) 166332 ENSMUSG00000085449.1 ENSMUSG00000085449 ENSMUST00000132097 Gm15520 antisense Interval_63560 chr15 102041611 102042102 + 0 NA Intergenic Intergenic 13676 ENSMUSG00000023043.7 ENSMUSG00000023043 ENSMUST00000023803 Krt18 protein_coding Interval_81815 chr18 64959178 64960829 + 0 NA intron (ENSMUSG00000024589.18, intron 1 of 29) protein_coding-intron (ENSMUSG00000024589.18, intron 1 of 29) 41172 ENSMUSG00000117895.1 ENSMUSG00000117895 ENSMUST00000237218 Gm50368 antisense Interval_70841 chr17 15247398 15248607 + 0 NA promoter-TSS (ENSMUSG00000097624.2) lincRNA-promoter-TSS (ENSMUSG00000097624.2) -85 ENSMUSG00000097624.2 ENSMUSG00000097624 ENSMUST00000181658 Gm5091 lincRNA Interval_141830 chr6 134781098 134782587 + 0 NA intron (ENSMUSG00000030203.17, intron 1 of 6) protein_coding-intron (ENSMUSG00000030203.17, intron 1 of 6) -20742 ENSMUSG00000030203.17 ENSMUSG00000030203 ENSMUST00000149776 Dusp16 protein_coding Interval_66056 chr16 31299406 31301637 + 0 NA intron (ENSMUSG00000022548.14, intron 1 of 2) protein_coding-intron (ENSMUSG00000022548.14, intron 3 of 4) 2924 ENSMUSG00000022548.14 ENSMUSG00000022548 ENSMUST00000145837 Apod protein_coding Interval_122902 chr5 27128489 27128788 + 0 NA intron (ENSMUSG00000061576.15, intron 1 of 25) protein_coding-intron (ENSMUSG00000061576.15, intron 1 of 25) -67317 ENSMUSG00000105946.1 ENSMUSG00000105946 ENSMUST00000199729 Gm43776 TEC Interval_135313 chr6 38232051 38232525 + 0 NA intron (ENSMUSG00000063455.16, intron 1 of 19) protein_coding-intron (ENSMUSG00000063455.16, intron 1 of 19) 21721 ENSMUSG00000063455.16 ENSMUSG00000063455 ENSMUST00000152464 D630045J12Rik protein_coding Interval_31010 chr11 97695834 97696982 + 0 NA TTS (ENSMUSG00000018537.16) protein_coding-TTS (ENSMUSG00000018537.16) 2976 ENSMUSG00000018537.16 ENSMUSG00000018537 ENSMUST00000126185 Pcgf2 protein_coding Interval_160385 chr8 108878690 108878921 + 0 NA intron (ENSMUSG00000038872.10, intron 10 of 15) protein_coding-intron (ENSMUSG00000038872.10, intron 4 of 9) 11243 ENSMUSG00000102989.1 ENSMUSG00000102989 ENSMUST00000195769 Gm38318 TEC Interval_117538 chr4 124500908 124502372 + 0 NA Intergenic Intergenic -50355 ENSMUSG00000084757.7 ENSMUSG00000084757 ENSMUST00000156566 1700057H15Rik lincRNA Interval_17591 chr10 78037002 78038610 + 0 NA intron (ENSMUSG00000000731.15, intron 8 of 11) protein_coding-intron (ENSMUSG00000000731.15, intron 8 of 13) 5774 ENSMUSG00000000731.15 ENSMUSG00000000731 ENSMUST00000141255 Aire protein_coding Interval_126475 chr5 88806288 88806792 + 0 NA intron (ENSMUSG00000105640.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000105640.1, intron 1 of 1) -1317 ENSMUSG00000106305.1 ENSMUSG00000106305 ENSMUST00000199360 Gm42911 processed_pseudogene Interval_18477 chr10 86473725 86474069 + 0 NA intron (ENSMUSG00000059602.14, intron 1 of 6) protein_coding-intron (ENSMUSG00000059602.14, intron 1 of 13) 18000 ENSMUSG00000059602.14 ENSMUSG00000059602 ENSMUST00000139197 Syn3 protein_coding Interval_40956 chr12 110244332 110244637 + 0 NA Intergenic Intergenic 7992 ENSMUSG00000113605.1 ENSMUSG00000113605 ENSMUST00000222054 4930425K24Rik TEC Interval_157614 chr8 71715602 71717059 + 0 NA promoter-TSS (ENSMUSG00000070000.13) protein_coding-promoter-TSS (ENSMUSG00000070000.13) 9374 ENSMUSG00000070000.13 ENSMUSG00000070000 ENSMUST00000125092 Fcho1 protein_coding Interval_104021 chr3 57451930 57452321 + 0 NA Intergenic Intergenic 26811 ENSMUSG00000027801.7 ENSMUSG00000027801 ENSMUST00000029377 Tm4sf4 protein_coding Interval_170709 chr9 110225636 110226434 + 0 NA intron (ENSMUSG00000032481.17, intron 26 of 28) protein_coding-intron (ENSMUSG00000032481.17, intron 26 of 27) -10359 ENSMUSG00000032481.17 ENSMUSG00000032481 ENSMUST00000200426 Smarcc1 protein_coding Interval_103865 chr3 53863283 53864213 + 0 NA promoter-TSS (ENSMUSG00000027746.13) protein_coding-promoter-TSS (ENSMUSG00000027746.13) 14 ENSMUSG00000027746.13 ENSMUSG00000027746 ENSMUST00000152414 Ufm1 protein_coding Interval_68024 chr16 64016599 64016850 + 0 NA Intergenic Intergenic -61594 ENSMUSG00000116722.1 ENSMUSG00000116722 ENSMUST00000231945 Gm49627 processed_pseudogene Interval_50429 chr14 12966374 12967682 + 0 NA Intergenic Intergenic -25667 ENSMUSG00000114561.1 ENSMUSG00000114561 ENSMUST00000223657 Gm48515 processed_pseudogene Interval_113407 chr4 54637282 54638716 + 0 NA Intergenic Intergenic 8281 ENSMUSG00000099421.1 ENSMUSG00000099421 ENSMUST00000190821 Gm29067 lincRNA Interval_9839 chr1 162879899 162880691 + 0 NA intron (ENSMUSG00000040170.13, intron 1 of 1) protein_coding-intron (ENSMUSG00000040170.13, intron 7 of 8) 436 ENSMUSG00000040170.13 ENSMUSG00000040170 ENSMUST00000147617 Fmo2 protein_coding Interval_19085 chr10 94378049 94379642 + 0 NA intron (ENSMUSG00000020023.18, intron 1 of 1) protein_coding-intron (ENSMUSG00000020023.18, intron 1 of 2) -30046 ENSMUSG00000085409.1 ENSMUSG00000085409 ENSMUST00000155180 Gm16155 sense_intronic Interval_139988 chr6 113237354 113238276 + 0 NA promoter-TSS (ENSMUSG00000030269.14) protein_coding-promoter-TSS (ENSMUSG00000030269.14) -18017 ENSMUSG00000030269.14 ENSMUSG00000030269 ENSMUST00000151149 Mtmr14 protein_coding Interval_125512 chr5 67837615 67837844 + 0 NA promoter-TSS (ENSMUSG00000106837.1) TEC-promoter-TSS (ENSMUSG00000106837.1) -901 ENSMUSG00000106837.1 ENSMUSG00000106837 ENSMUST00000202983 D630030B08Rik TEC Interval_80797 chr18 47248923 47249469 + 0 NA exon (ENSMUSG00000019647.16, exon 19 of 19) protein_coding-exon (ENSMUSG00000019647.16, exon 19 of 19) 84152 ENSMUSG00000019647.16 ENSMUSG00000019647 ENSMUST00000144223 Sema6a protein_coding Interval_113522 chr4 55508418 55509046 + 0 NA TTS (ENSMUSG00000082952.1) processed_pseudogene-TTS (ENSMUSG00000082952.1) 438 ENSMUSG00000082952.1 ENSMUSG00000082952 ENSMUST00000119155 Gm12507 processed_pseudogene Interval_16945 chr10 70059886 70061065 + 0 NA Intergenic Intergenic -114536 ENSMUSG00000048701.13 ENSMUSG00000048701 ENSMUST00000135607 Ccdc6 protein_coding Interval_4297 chr1 72506405 72506795 + 0 NA intron (ENSMUSG00000039372.5, intron 1 of 3) protein_coding-intron (ENSMUSG00000039372.5, intron 1 of 3) 30330 ENSMUSG00000039372.5 ENSMUSG00000039372 ENSMUST00000047786 Marchf4 protein_coding Interval_7590 chr1 132367071 132368019 + 0 NA promoter-TSS (ENSMUSG00000042066.16) protein_coding-promoter-TSS (ENSMUSG00000042066.16) 342 ENSMUSG00000042066.16 ENSMUSG00000042066 ENSMUST00000125439 Tmcc2 protein_coding Interval_1549 chr1 25364145 25364441 + 0 NA exon (ENSMUSG00000104100.1, exon 1 of 1) TEC-exon (ENSMUSG00000104100.1, exon 1 of 1) 1527 ENSMUSG00000104100.1 ENSMUSG00000104100 ENSMUST00000192216 Gm37880 TEC Interval_115787 chr4 104262342 104263146 + 0 NA intron (ENSMUSG00000028519.16, intron 3 of 9) protein_coding-intron (ENSMUSG00000028519.16, intron 3 of 9) 321785 ENSMUSG00000081696.2 ENSMUSG00000081696 ENSMUST00000118427 Gm12717 processed_pseudogene Interval_23564 chr11 23382138 23383485 + 0 NA intron (ENSMUSG00000056342.16, intron 23 of 79) protein_coding-intron (ENSMUSG00000056342.16, intron 23 of 79) 75916 ENSMUSG00000056342.16 ENSMUSG00000056342 ENSMUST00000125701 Usp34 protein_coding Interval_117495 chr4 124160254 124160620 + 0 NA Intergenic Intergenic 118740 ENSMUSG00000103541.1 ENSMUSG00000103541 ENSMUST00000193103 Gm37667 TEC Interval_80116 chr18 37720273 37720836 + 0 NA exon (ENSMUSG00000103585.1, exon 1 of 2) protein_coding-exon (ENSMUSG00000103585.1, exon 1 of 2) 185 ENSMUSG00000103585.1 ENSMUSG00000103585 ENSMUST00000195069 Pcdhgb4 protein_coding Interval_159301 chr8 93010212 93012496 + 0 NA promoter-TSS (ENSMUSG00000109651.1) processed_transcript-promoter-TSS (ENSMUSG00000109651.1) -265 ENSMUSG00000109651.1 ENSMUSG00000109651 ENSMUST00000209831 Gm45463 processed_transcript Interval_5734 chr1 91338438 91339235 + 0 NA intron (ENSMUSG00000049515.12, intron 5 of 8) protein_coding-intron (ENSMUSG00000049515.12, intron 5 of 8) -12180 ENSMUSG00000026308.8 ENSMUSG00000026308 ENSMUST00000027533 Klhl30 protein_coding Interval_174065 chrX 134162238 134162990 + 0 NA promoter-TSS (ENSMUSG00000031258.4) protein_coding-promoter-TSS (ENSMUSG00000031258.4) -538 ENSMUSG00000031258.4 ENSMUSG00000031258 ENSMUST00000148722 Xkrx protein_coding Interval_40421 chr12 104763510 104764663 + 0 NA exon (ENSMUSG00000021097.15, exon 13 of 13) protein_coding-exon (ENSMUSG00000021097.15, exon 13 of 13) -42034 ENSMUSG00000041415.10 ENSMUSG00000041415 ENSMUST00000222002 Dicer1 protein_coding Interval_169081 chr9 91860064 91860770 + 0 NA Intergenic Intergenic 20647 ENSMUSG00000087871.1 ENSMUSG00000087871 ENSMUST00000157246 Gm26101 snRNA Interval_141050 chr6 124676585 124677384 + 0 NA intron (ENSMUSG00000004270.13, intron 1 of 2) protein_coding-intron (ENSMUSG00000004270.13, intron 1 of 12) -25273 ENSMUSG00000004270.13 ENSMUSG00000004270 ENSMUST00000150597 Lpcat3 protein_coding Interval_118602 chr4 132720033 132720888 + 0 NA intron (ENSMUSG00000028886.15, intron 15 of 15) protein_coding-intron (ENSMUSG00000028886.15, intron 14 of 14) 12068 ENSMUSG00000037752.4 ENSMUSG00000037752 ENSMUST00000143642 Xkr8 protein_coding Interval_147664 chr7 71064343 71065554 + 0 NA intron (ENSMUSG00000109532.1, intron 3 of 3) lincRNA-intron (ENSMUSG00000109532.1, intron 3 of 3) -32099 ENSMUSG00000109161.1 ENSMUSG00000109161 ENSMUST00000209158 Gm39033 lincRNA Interval_7136 chr1 126997540 126997896 + 0 NA Intergenic Intergenic 52978 ENSMUSG00000101385.1 ENSMUSG00000101385 ENSMUST00000185860 Gm5261 processed_pseudogene Interval_129066 chr5 117178145 117178920 + 0 NA intron (ENSMUSG00000061288.13, intron 1 of 12) protein_coding-intron (ENSMUSG00000061288.13, intron 1 of 19) -18023 ENSMUSG00000084587.1 ENSMUSG00000084587 ENSMUST00000122638 n-R5s174 rRNA Interval_89307 chr2 19138645 19138981 + 0 NA Intergenic Intergenic -35715 ENSMUSG00000083281.1 ENSMUSG00000083281 ENSMUST00000120451 Gm13332 processed_pseudogene Interval_142870 chr6 146600090 146600793 + 0 NA Intergenic Intergenic 22501 ENSMUSG00000040242.14 ENSMUSG00000040242 ENSMUST00000160697 Fgfr1op2 protein_coding Interval_28503 chr11 76381179 76382075 + 0 NA intron (ENSMUSG00000020844.6, intron 1 of 1) protein_coding-intron (ENSMUSG00000020844.6, intron 1 of 7) 17441 ENSMUSG00000020844.6 ENSMUSG00000020844 ENSMUST00000131472 Nxn protein_coding Interval_134094 chr6 19762307 19764017 + 0 NA Intergenic Intergenic 14383 ENSMUSG00000107100.1 ENSMUSG00000107100 ENSMUST00000202405 Gm18482 processed_pseudogene Interval_82509 chr18 74778276 74779610 + 0 NA promoter-TSS (ENSMUSG00000036880.10) protein_coding-promoter-TSS (ENSMUSG00000036880.10) -243 ENSMUSG00000089235.1 ENSMUSG00000089235 ENSMUST00000158610 Gm23119 scaRNA Interval_61229 chr15 80104823 80106252 + 0 NA intron (ENSMUSG00000022415.12, intron 1 of 2) protein_coding-intron (ENSMUSG00000022415.12, intron 1 of 3) 7667 ENSMUSG00000022415.12 ENSMUSG00000022415 ENSMUST00000135727 Syngr1 protein_coding Interval_78710 chr18 18610575 18611799 + 0 NA Intergenic Intergenic -367030 ENSMUSG00000117574.1 ENSMUSG00000117574 ENSMUST00000234831 Gm50084 lincRNA Interval_49581 chr13 113191708 113192800 + 0 NA intron (ENSMUSG00000042385.14, intron 2 of 5) protein_coding-intron (ENSMUSG00000042385.14, intron 2 of 5) -11333 ENSMUSG00000042385.14 ENSMUSG00000042385 ENSMUST00000140324 Gzmk protein_coding Interval_109310 chr3 138825837 138826996 + 0 NA intron (ENSMUSG00000028152.10, intron 1 of 7) protein_coding-intron (ENSMUSG00000028152.10, intron 1 of 7) 2746 ENSMUSG00000086123.3 ENSMUSG00000086123 ENSMUST00000153140 Gm16060 processed_pseudogene Interval_5502 chr1 89322536 89323357 + 0 NA intron (ENSMUSG00000101288.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000101288.1, intron 1 of 2) 35198 ENSMUSG00000101288.1 ENSMUSG00000101288 ENSMUST00000190308 Gm28342 lincRNA Interval_12412 chr1 193181030 193181566 + 0 NA intron (ENSMUSG00000037318.10, intron 11 of 14) protein_coding-intron (ENSMUSG00000037318.10, intron 13 of 15) -5976 ENSMUSG00000090080.2 ENSMUSG00000090080 ENSMUST00000162454 Gm15872 antisense Interval_87429 chr19 50257351 50257894 + 0 NA intron (ENSMUSG00000043531.16, intron 8 of 25) protein_coding-intron (ENSMUSG00000043531.16, intron 9 of 26) 110684 ENSMUSG00000110007.2 ENSMUSG00000110007 ENSMUST00000210140 Gm45352 antisense Interval_11310 chr1 180873911 180874635 + 0 NA promoter-TSS (ENSMUSG00000104251.1) processed_pseudogene-promoter-TSS (ENSMUSG00000104251.1) -605 ENSMUSG00000104251.1 ENSMUSG00000104251 ENSMUST00000195256 Gm18036 processed_pseudogene Interval_126687 chr5 92050336 92052297 + 0 NA TTS (ENSMUSG00000029405.16) protein_coding-TTS (ENSMUSG00000029405.16) 4876 ENSMUSG00000088712.1 ENSMUSG00000088712 ENSMUST00000158087 Gm22728 scaRNA Interval_150375 chr7 110002560 110003351 + 0 NA promoter-TSS (ENSMUSG00000065389.1) snRNA-promoter-TSS (ENSMUSG00000065389.1) -623 ENSMUSG00000065389.1 ENSMUSG00000065389 ENSMUST00000083455 Gm23100 snRNA Interval_83836 chr19 5001623 5002576 + 0 NA Intergenic Intergenic -7286 ENSMUSG00000117723.1 ENSMUSG00000117723 ENSMUST00000235939 Gm50382 processed_pseudogene Interval_84412 chr19 10709013 10710222 + 0 NA intron (ENSMUSG00000048832.9, intron 2 of 3) protein_coding-intron (ENSMUSG00000048832.9, intron 2 of 4) 20854 ENSMUSG00000048832.9 ENSMUSG00000048832 ENSMUST00000235921 Vps37c protein_coding Interval_69674 chr16 95226767 95227043 + 0 NA intron (ENSMUSG00000116720.1, intron 3 of 4) antisense-intron (ENSMUSG00000116720.1, intron 3 of 4) -31286 ENSMUSG00000062609.14 ENSMUSG00000062609 ENSMUST00000138329 Kcnj15 protein_coding Interval_65459 chr16 22449584 22449865 + 0 NA Intergenic Intergenic -47895 ENSMUSG00000013089.15 ENSMUSG00000013089 ENSMUST00000170393 Etv5 protein_coding Interval_5485 chr1 89175190 89176483 + 0 NA Intergenic Intergenic 78763 ENSMUSG00000102700.1 ENSMUSG00000102700 ENSMUST00000195426 Gm38312 TEC Interval_46873 chr13 72938670 72939009 + 0 NA Intergenic Intergenic -122076 ENSMUSG00000113082.1 ENSMUSG00000113082 ENSMUST00000223149 D730050B12Rik lincRNA Interval_161527 chr8 120973212 120974041 + 0 NA intron (ENSMUSG00000092329.1, intron 1 of 15) protein_coding-intron (ENSMUSG00000092329.1, intron 1 of 15) -29301 ENSMUSG00000101886.1 ENSMUSG00000101886 ENSMUST00000187913 Gm28324 lincRNA Interval_100569 chr2 170165206 170166495 + 0 NA Intergenic Intergenic -17747 ENSMUSG00000052056.14 ENSMUSG00000052056 ENSMUST00000149318 Zfp217 protein_coding Interval_47046 chr13 74743011 74743652 + 0 NA intron (ENSMUSG00000021585.10, intron 8 of 20) protein_coding-intron (ENSMUSG00000021585.10, intron 8 of 30) 25530 ENSMUSG00000113015.1 ENSMUSG00000113015 ENSMUST00000222599 Gm6296 processed_pseudogene Interval_161226 chr8 118849938 118851002 + 0 NA intron (ENSMUSG00000031841.19, intron 6 of 8) protein_coding-intron (ENSMUSG00000031841.19, intron 4 of 13) 123570 ENSMUSG00000087707.1 ENSMUSG00000087707 ENSMUST00000157082 Gm22999 snoRNA Interval_136605 chr6 56537456 56537869 + 0 NA intron (ENSMUSG00000004347.17, intron 2 of 19) protein_coding-intron (ENSMUSG00000004347.17, intron 1 of 18) 46184 ENSMUSG00000096087.1 ENSMUSG00000096087 ENSMUST00000104123 Gm24709 snoRNA Interval_92919 chr2 68563072 68564117 + 0 NA Intergenic Intergenic 4961 ENSMUSG00000115996.1 ENSMUSG00000115996 ENSMUST00000230308 Gm49462 lincRNA Interval_174272 chrX 142813300 142813533 + 0 NA intron (ENSMUSG00000047045.17, intron 2 of 4) protein_coding-intron (ENSMUSG00000047045.17, intron 5 of 6) -37069 ENSMUSG00000081463.1 ENSMUSG00000081463 ENSMUST00000120474 Gm15049 processed_pseudogene Interval_41889 chr13 3909676 3911061 + 0 NA intron (ENSMUSG00000021215.15, intron 2 of 11) protein_coding-intron (ENSMUSG00000021215.15, intron 2 of 11) 7810 ENSMUSG00000021215.15 ENSMUSG00000021215 ENSMUST00000223258 Net1 protein_coding Interval_169620 chr9 99482915 99484081 + 0 NA intron (ENSMUSG00000032468.11, intron 20 of 21) protein_coding-intron (ENSMUSG00000032468.11, intron 20 of 21) 32023 ENSMUSG00000046242.8 ENSMUSG00000046242 ENSMUST00000056103 Nme9 protein_coding Interval_76218 chr17 77852219 77852429 + 0 NA Intergenic Intergenic -164975 ENSMUSG00000117553.1 ENSMUSG00000117553 ENSMUST00000234795 Gm4711 processed_pseudogene Interval_34973 chr12 16011851 16012538 + 0 NA intron (ENSMUSG00000113930.1, intron 2 of 9) lincRNA-intron (ENSMUSG00000113930.1, intron 2 of 9) 3351 ENSMUSG00000113930.1 ENSMUSG00000113930 ENSMUST00000223158 Gm36235 lincRNA Interval_40555 chr12 105705447 105706517 + 0 NA promoter-TSS (ENSMUSG00000041323.6) protein_coding-promoter-TSS (ENSMUSG00000041323.6) -12874 ENSMUSG00000041323.6 ENSMUSG00000041323 ENSMUST00000220702 Ak7 protein_coding Interval_143061 chr6 148991700 148994925 + 0 NA exon (ENSMUSG00000030313.15, exon 21 of 21) protein_coding-exon (ENSMUSG00000030313.15, exon 21 of 21) -10603 ENSMUSG00000082633.1 ENSMUSG00000082633 ENSMUST00000117470 Gm15779 processed_pseudogene Interval_105787 chr3 89336593 89338373 + 0 NA promoter-TSS (ENSMUSG00000097004.1) antisense-promoter-TSS (ENSMUSG00000097004.1) -367 ENSMUSG00000097004.1 ENSMUSG00000097004 ENSMUST00000180791 4731419I09Rik antisense Interval_107801 chr3 115442506 115443094 + 0 NA Intergenic Intergenic 41336 ENSMUSG00000080676.1 ENSMUSG00000080676 ENSMUST00000117026 Gm25347 miRNA Interval_105730 chr3 88968167 88968357 + 0 NA intron (ENSMUSG00000028053.13, intron 2 of 27) protein_coding-intron (ENSMUSG00000028053.13, intron 1 of 26) 2467 ENSMUSG00000095712.1 ENSMUSG00000095712 ENSMUST00000178517 Gm26465 snRNA Interval_148813 chr7 88405001 88405554 + 0 NA Intergenic Intergenic -25117 ENSMUSG00000030559.8 ENSMUSG00000030559 ENSMUST00000208478 Rab38 protein_coding Interval_100807 chr2 172629689 172629856 + 0 NA Intergenic Intergenic 78781 ENSMUSG00000028640.11 ENSMUSG00000028640 ENSMUST00000142633 Tfap2c protein_coding Interval_116492 chr4 114647576 114649293 + 0 NA Intergenic Intergenic 24906 ENSMUSG00000100998.1 ENSMUSG00000100998 ENSMUST00000189251 Gm28864 lincRNA Interval_18745 chr10 89865574 89866450 + 0 NA Intergenic Intergenic -7497 ENSMUSG00000058589.14 ENSMUSG00000058589 ENSMUST00000183024 Anks1b protein_coding Interval_162346 chr8 127299247 127299607 + 0 NA promoter-TSS (ENSMUSG00000025812.18) protein_coding-promoter-TSS (ENSMUSG00000025812.18) 128023 ENSMUSG00000025812.18 ENSMUSG00000025812 ENSMUST00000159940 Pard3 protein_coding Interval_99482 chr2 162274074 162274414 + 0 NA intron (ENSMUSG00000053141.16, intron 3 of 29) protein_coding-intron (ENSMUSG00000053141.16, intron 3 of 30) -116569 ENSMUSG00000084919.1 ENSMUSG00000084919 ENSMUST00000151688 Ptprtos antisense Interval_168306 chr9 78545406 78546023 + 0 NA intron (ENSMUSG00000049624.14, intron 9 of 10) protein_coding-intron (ENSMUSG00000049624.14, intron 9 of 10) 25168 ENSMUSG00000111417.1 ENSMUSG00000111417 ENSMUST00000214586 Gm47430 lincRNA Interval_135363 chr6 38624238 38624467 + 0 NA Intergenic Intergenic 12881 ENSMUSG00000071537.6 ENSMUSG00000071537 ENSMUST00000201345 Klrg2 protein_coding Interval_4551 chr1 74964377 74965371 + 0 NA Intergenic Intergenic 10622 ENSMUSG00000103145.1 ENSMUSG00000103145 ENSMUST00000194616 Gm37744 TEC Interval_164452 chr9 37129070 37129440 + 0 NA intron (ENSMUSG00000035934.16, intron 1 of 4) protein_coding-intron (ENSMUSG00000035934.16, intron 1 of 12) 10369 ENSMUSG00000111254.1 ENSMUSG00000111254 ENSMUST00000216206 Gm48717 TEC Interval_82258 chr18 69714377 69714610 + 0 NA Intergenic Intergenic 63552 ENSMUSG00000064706.1 ENSMUSG00000064706 ENSMUST00000082772 Gm22508 misc_RNA Interval_32887 chr11 112818547 112819143 + 0 NA Intergenic Intergenic -6334 ENSMUSG00000020624.3 ENSMUSG00000020624 ENSMUST00000153429 4933434M16Rik lincRNA Interval_41521 chr12 115872683 115872898 + 0 NA Intergenic Intergenic -3563 ENSMUSG00000096326.2 ENSMUSG00000096326 ENSMUST00000199373 Ighv1-78 IG_V_gene Interval_155262 chr8 29156049 29156324 + 0 NA intron (ENSMUSG00000063626.6, intron 1 of 14) protein_coding-intron (ENSMUSG00000063626.6, intron 1 of 17) -43410 ENSMUSG00000109648.1 ENSMUSG00000109648 ENSMUST00000209370 Svet1 TEC Interval_10669 chr1 172561900 172563772 + 0 NA intron (ENSMUSG00000049598.9, intron 5 of 5) protein_coding-intron (ENSMUSG00000049598.9, intron 6 of 6) 2930 ENSMUSG00000049598.9 ENSMUSG00000049598 ENSMUST00000177086 Vsig8 protein_coding Interval_54522 chr14 70456900 70458474 + 0 NA promoter-TSS (ENSMUSG00000003469.9) protein_coding-promoter-TSS (ENSMUSG00000003469.9) -836 ENSMUSG00000003469.9 ENSMUSG00000003469 ENSMUST00000159180 Phyhip protein_coding Interval_141792 chr6 134545117 134545575 + 0 NA intron (ENSMUSG00000030201.15, intron 1 of 22) protein_coding-intron (ENSMUSG00000030201.15, intron 1 of 22) 62335 ENSMUSG00000107728.1 ENSMUSG00000107728 ENSMUST00000204630 Gm38910 lincRNA Interval_32345 chr11 107092040 107092918 + 0 NA intron (ENSMUSG00000040481.17, intron 4 of 28) protein_coding-intron (ENSMUSG00000040481.17, intron 4 of 27) -45136 ENSMUSG00000040481.17 ENSMUSG00000040481 ENSMUST00000149486 Bptf protein_coding Interval_137718 chr6 81472992 81473629 + 0 NA Intergenic Intergenic -52052 ENSMUSG00000107691.1 ENSMUSG00000107691 ENSMUST00000203247 Gm43901 processed_pseudogene Interval_97039 chr2 130714224 130715103 + 0 NA intron (ENSMUSG00000027309.18, intron 3 of 5) protein_coding-intron (ENSMUSG00000027309.18, intron 31 of 36) -8967 ENSMUSG00000084694.1 ENSMUSG00000084694 ENSMUST00000122745 Gm24893 misc_RNA Interval_42898 chr13 21222216 21223552 + 0 NA Intergenic Intergenic -35328 ENSMUSG00000113104.1 ENSMUSG00000113104 ENSMUST00000220690 Gm47806 antisense Interval_155460 chr8 33721804 33722667 + 0 NA Intergenic Intergenic 9584 ENSMUSG00000049476.12 ENSMUSG00000049476 ENSMUST00000187948 1700104B16Rik lincRNA Interval_64121 chr16 8549480 8550010 + 0 NA intron (ENSMUSG00000057880.12, intron 1 of 2) protein_coding-intron (ENSMUSG00000057880.12, intron 1 of 15) -33882 ENSMUSG00000057880.12 ENSMUSG00000057880 ENSMUST00000128459 Abat protein_coding Interval_170366 chr9 107470158 107470634 + 0 NA intron (ENSMUSG00000010066.15, intron 3 of 37) protein_coding-intron (ENSMUSG00000010066.15, intron 3 of 37) -25365 ENSMUSG00000091425.1 ENSMUSG00000091425 ENSMUST00000164032 Gm17118 antisense Interval_122337 chr5 21453031 21453402 + 0 NA intron (ENSMUSG00000047221.5, intron 3 of 5) protein_coding-intron (ENSMUSG00000047221.5, intron 5 of 7) 28215 ENSMUSG00000047221.5 ENSMUSG00000047221 ENSMUST00000146056 Fam185a protein_coding Interval_64212 chr16 9223045 9223418 + 0 NA Intergenic Intergenic 64461 ENSMUSG00000116123.1 ENSMUSG00000116123 ENSMUST00000229655 Gm49451 lincRNA Interval_8607 chr1 143776463 143778028 + 0 NA promoter-TSS (ENSMUSG00000018189.12) protein_coding-promoter-TSS (ENSMUSG00000018189.12) -177 ENSMUSG00000018199.9 ENSMUSG00000018199 ENSMUST00000018343 Ro60 protein_coding Interval_107582 chr3 108660680 108661179 + 0 NA intron (ENSMUSG00000027884.16, intron 2 of 12) protein_coding-intron (ENSMUSG00000027884.16, intron 2 of 12) -6922 ENSMUSG00000027884.16 ENSMUSG00000027884 ENSMUST00000156811 Clcc1 protein_coding Interval_59093 chr15 43667743 43668388 + 0 NA Intergenic Intergenic -140396 ENSMUSG00000115407.1 ENSMUSG00000115407 ENSMUST00000226778 Gm2140 processed_pseudogene Interval_141303 chr6 127083165 127085483 + 0 NA TTS (ENSMUSG00000038028.9) protein_coding-TTS (ENSMUSG00000038028.9) 11422 ENSMUSG00000000182.9 ENSMUSG00000000182 ENSMUST00000000186 Fgf23 protein_coding Interval_135197 chr6 37433999 37435086 + 0 NA intron (ENSMUSG00000038648.5, intron 1 of 11) protein_coding-intron (ENSMUSG00000038648.5, intron 1 of 11) -98007 ENSMUSG00000038648.5 ENSMUSG00000038648 ENSMUST00000128534 Creb3l2 protein_coding Interval_124744 chr5 53642316 53642548 + 0 NA TTS (ENSMUSG00000039191.12) protein_coding-TTS (ENSMUSG00000039191.12) 3800 ENSMUSG00000039191.12 ENSMUSG00000039191 ENSMUST00000202092 Rbpj protein_coding Interval_99747 chr2 164655629 164656510 + 0 NA promoter-TSS (ENSMUSG00000070529.7) protein_coding-promoter-TSS (ENSMUSG00000070529.7) 23 ENSMUSG00000070529.7 ENSMUSG00000070529 ENSMUST00000094344 Wfdc10 protein_coding Interval_36056 chr12 34218734 34218925 + 0 NA intron (ENSMUSG00000004698.11, intron 21 of 26) protein_coding-intron (ENSMUSG00000004698.11, intron 18 of 24) 72306 ENSMUSG00000113756.1 ENSMUSG00000113756 ENSMUST00000221733 Gm18025 processed_pseudogene Interval_14245 chr10 29508795 29509027 + 0 NA intron (ENSMUSG00000019880.10, intron 1 of 4) protein_coding-intron (ENSMUSG00000019880.10, intron 1 of 4) -4181 ENSMUSG00000019880.10 ENSMUSG00000019880 ENSMUST00000092623 Rspo3 protein_coding Interval_152898 chr7 139579335 139579946 + 0 NA TTS (ENSMUSG00000025477.14) protein_coding-TTS (ENSMUSG00000025477.14) 3150 ENSMUSG00000041309.17 ENSMUSG00000041309 ENSMUST00000106095 Nkx6-2 protein_coding Interval_15656 chr10 53155622 53156558 + 0 NA Intergenic Intergenic -25090 ENSMUSG00000112376.1 ENSMUSG00000112376 ENSMUST00000219795 Gm40649 lincRNA Interval_118524 chr4 132269053 132270563 + 0 NA promoter-TSS (ENSMUSG00000099937.1) lincRNA-promoter-TSS (ENSMUSG00000099937.1) -248 ENSMUSG00000099937.1 ENSMUSG00000099937 ENSMUST00000191518 Gm28872 lincRNA Interval_113942 chr4 60617766 60619605 + 0 NA Intergenic Intergenic 21088 ENSMUSG00000082868.1 ENSMUSG00000082868 ENSMUST00000118667 Mup-ps5 unprocessed_pseudogene Interval_18720 chr10 89677618 89677993 + 0 NA exon (ENSMUSG00000069539.11, exon 2 of 2) protein_coding-exon (ENSMUSG00000069539.11, exon 2 of 2) 8463 ENSMUSG00000069539.11 ENSMUSG00000069539 ENSMUST00000174429 Scyl2 protein_coding Interval_52383 chr14 45503915 45504594 + 0 NA TTS (ENSMUSG00000037712.16) protein_coding-TTS (ENSMUSG00000037712.16) -12169 ENSMUSG00000115275.1 ENSMUSG00000115275 ENSMUST00000228572 9630050E16Rik TEC Interval_46397 chr13 64563675 64564348 + 0 NA Intergenic Intergenic -47849 ENSMUSG00000113850.1 ENSMUSG00000113850 ENSMUST00000222525 Gm47191 transcribed_processed_pseudogene Interval_81311 chr18 57827637 57828222 + 0 NA Intergenic Intergenic -35569 ENSMUSG00000118391.1 ENSMUSG00000118391 ENSMUST00000236807 Gm19519 antisense Interval_71078 chr17 17733356 17733964 + 0 NA exon (ENSMUSG00000092120.2, exon 6 of 6) protein_coding-exon (ENSMUSG00000092120.2, exon 6 of 6) 29913 ENSMUSG00000092120.2 ENSMUSG00000092120 ENSMUST00000232113 Vmn2r90 protein_coding Interval_163969 chr9 29961747 29963222 + 0 NA intron (ENSMUSG00000059974.10, intron 1 of 1) protein_coding-intron (ENSMUSG00000059974.10, intron 1 of 7) 101235 ENSMUSG00000111175.1 ENSMUSG00000111175 ENSMUST00000214849 Gm19640 processed_pseudogene Interval_137201 chr6 69881054 69881909 + 0 NA Intergenic Intergenic -1662 ENSMUSG00000105955.1 ENSMUSG00000105955 ENSMUST00000199208 Igkv12-40 IG_V_pseudogene Interval_166540 chr9 60748164 60749355 + 0 NA intron (ENSMUSG00000095956.2, intron 2 of 3) lincRNA-intron (ENSMUSG00000095956.2, intron 2 of 3) 5639 ENSMUSG00000095956.2 ENSMUSG00000095956 ENSMUST00000178191 1700036A12Rik lincRNA Interval_15752 chr10 55982745 55983182 + 0 NA Intergenic Intergenic 119040 ENSMUSG00000112528.1 ENSMUSG00000112528 ENSMUST00000218919 Gm29794 processed_pseudogene Interval_145900 chr7 41550244 41550517 + 0 NA intron (ENSMUSG00000090744.7, intron 1 of 3) protein_coding-intron (ENSMUSG00000090744.7, intron 1 of 3) 23282 ENSMUSG00000090744.7 ENSMUSG00000090744 ENSMUST00000171059 Gm6871 protein_coding Interval_116688 chr4 116658305 116658799 + 0 NA Intergenic Intergenic -9078 ENSMUSG00000028692.14 ENSMUSG00000028692 ENSMUST00000128059 Akr1a1 protein_coding Interval_138010 chr6 84116340 84116605 + 0 NA exon (ENSMUSG00000033788.15, exon 9 of 9) protein_coding-exon (ENSMUSG00000033788.15, exon 9 of 9) -9465 ENSMUSG00000087001.2 ENSMUSG00000087001 ENSMUST00000137673 Gm15475 antisense Interval_174488 chrX 153327775 153329392 + 0 NA intron (ENSMUSG00000041649.13, intron 2 of 6) protein_coding-intron (ENSMUSG00000041649.13, intron 2 of 6) 75487 ENSMUSG00000080743.2 ENSMUSG00000080743 ENSMUST00000122032 Gm7150 processed_pseudogene Interval_166921 chr9 63953450 63954142 + 0 NA TTS (ENSMUSG00000036867.7) protein_coding-TTS (ENSMUSG00000036867.7) -26047 ENSMUSG00000111058.1 ENSMUSG00000111058 ENSMUST00000214827 Gm36033 lincRNA Interval_26450 chr11 57934220 57935521 + 0 NA Intergenic Intergenic 14215 ENSMUSG00000083657.1 ENSMUSG00000083657 ENSMUST00000117266 Gm12245 processed_pseudogene Interval_53807 chr14 62016820 62017023 + 0 NA Intergenic Intergenic 4602 ENSMUSG00000114368.1 ENSMUSG00000114368 ENSMUST00000224570 Gm47953 processed_pseudogene Interval_47311 chr13 81098477 81098918 + 0 NA intron (ENSMUSG00000069170.14, intron 7 of 7) protein_coding-intron (ENSMUSG00000069170.14, intron 89 of 89) -11133 ENSMUSG00000114836.1 ENSMUSG00000114836 ENSMUST00000224010 Gm18517 transcribed_processed_pseudogene Interval_69296 chr16 91983928 91985227 + 0 NA Intergenic Intergenic 25834 ENSMUSG00000116834.1 ENSMUSG00000116834 ENSMUST00000232327 Gm18020 processed_pseudogene Interval_132440 chr5 144928870 144929490 + 0 NA intron (ENSMUSG00000038780.14, intron 1 of 18) protein_coding-intron (ENSMUSG00000038780.14, intron 1 of 17) -31186 ENSMUSG00000038780.14 ENSMUSG00000038780 ENSMUST00000198621 Smurf1 protein_coding Interval_169989 chr9 103455485 103455791 + 0 NA intron (ENSMUSG00000032556.11, intron 1 of 6) protein_coding-intron (ENSMUSG00000032556.11, intron 1 of 6) -6542 ENSMUSG00000032556.11 ENSMUSG00000032556 ENSMUST00000124310 Bfsp2 protein_coding Interval_74601 chr17 53628391 53628587 + 0 NA intron (ENSMUSG00000000708.14, intron 3 of 5) protein_coding-intron (ENSMUSG00000000708.14, intron 3 of 17) -29826 ENSMUSG00000096517.1 ENSMUSG00000096517 ENSMUST00000180049 Gm6919 processed_pseudogene Interval_148632 chr7 83610658 83610904 + 0 NA intron (ENSMUSG00000038540.14, intron 15 of 21) protein_coding-intron (ENSMUSG00000038540.14, intron 15 of 22) 13254 ENSMUSG00000038540.14 ENSMUSG00000038540 ENSMUST00000171397 Tmc3 protein_coding Interval_968 chr1 13533184 13533513 + 0 NA Intergenic Intergenic 56527 ENSMUSG00000025935.10 ENSMUSG00000025935 ENSMUST00000188377 Tram1 protein_coding Interval_59880 chr15 60635010 60635223 + 0 NA Intergenic Intergenic -35227 ENSMUSG00000115504.1 ENSMUSG00000115504 ENSMUST00000226738 Gm48946 lincRNA Interval_20726 chr10 120558888 120559170 + 0 NA Intergenic Intergenic -46508 ENSMUSG00000088924.1 ENSMUSG00000088924 ENSMUST00000158299 Gm24298 snoRNA Interval_73782 chr17 43598144 43598991 + 0 NA intron (ENSMUSG00000023913.17, intron 6 of 10) protein_coding-intron (ENSMUSG00000023913.17, intron 5 of 11) -6135 ENSMUSG00000090307.7 ENSMUSG00000090307 ENSMUST00000164150 1700071M16Rik antisense Interval_148476 chr7 81569919 81572012 + 0 NA promoter-TSS (ENSMUSG00000045795.10) protein_coding-promoter-TSS (ENSMUSG00000045795.10) -979 ENSMUSG00000045795.10 ENSMUSG00000045795 ENSMUST00000209044 Whamm protein_coding Interval_10424 chr1 170739087 170739282 + 0 NA intron (ENSMUSG00000026663.6, intron 15 of 15) protein_coding-intron (ENSMUSG00000026663.6, intron 15 of 15) 12639 ENSMUSG00000096310.1 ENSMUSG00000096310 ENSMUST00000180190 Gm23523 snRNA Interval_73263 chr17 35854014 35854485 + 0 NA exon (ENSMUSG00000061607.15, exon 12 of 16) protein_coding-exon (ENSMUSG00000061607.15, exon 12 of 16) 5748 ENSMUSG00000061607.15 ENSMUSG00000061607 ENSMUST00000225192 Mdc1 protein_coding Interval_36340 chr12 41611841 41612082 + 0 NA intron (ENSMUSG00000056899.10, intron 3 of 5) protein_coding-intron (ENSMUSG00000056899.10, intron 4 of 6) 66570 ENSMUSG00000113766.1 ENSMUSG00000113766 ENSMUST00000222596 Gm47374 TEC Interval_141890 chr6 135167406 135168718 + 0 NA promoter-TSS (ENSMUSG00000042770.8) protein_coding-promoter-TSS (ENSMUSG00000042770.8) 73 ENSMUSG00000042770.8 ENSMUSG00000042770 ENSMUST00000205232 Hebp1 protein_coding Interval_8177 chr1 136259588 136261186 + 0 NA exon (ENSMUSG00000052759.7, exon 1 of 1) protein_coding-exon (ENSMUSG00000052759.7, exon 1 of 1) 486 ENSMUSG00000052759.7 ENSMUSG00000052759 ENSMUST00000086395 Gpr25 protein_coding Interval_88964 chr2 13672190 13673455 + 0 NA intron (ENSMUSG00000104354.1, intron 1 of 1) protein_coding-intron (ENSMUSG00000003418.11, intron 4 of 7) 306 ENSMUSG00000104354.1 ENSMUSG00000104354 ENSMUST00000195289 Gm37126 antisense Interval_20976 chr10 122960295 122961251 + 0 NA Intergenic Intergenic 24951 ENSMUSG00000065406.3 ENSMUSG00000065406 ENSMUST00000083472 Mirlet7i miRNA Interval_56944 chr14 123866102 123866548 + 0 NA intron (ENSMUSG00000032925.16, intron 7 of 10) protein_coding-intron (ENSMUSG00000032925.16, intron 7 of 10) -67393 ENSMUSG00000077481.1 ENSMUSG00000077481 ENSMUST00000104293 Gm25272 snoRNA Interval_1063 chr1 14708301 14708537 + 0 NA Intergenic Intergenic -44518 ENSMUSG00000054493.2 ENSMUSG00000054493 ENSMUST00000067599 Gm9947 antisense Interval_71610 chr17 24849690 24851102 + 0 NA promoter-TSS (ENSMUSG00000024158.17) protein_coding-promoter-TSS (ENSMUSG00000024158.17) -32 ENSMUSG00000045316.5 ENSMUSG00000045316 ENSMUST00000049642 Fahd1 protein_coding Interval_116685 chr4 116645438 116645915 + 0 NA intron (ENSMUSG00000028692.14, intron 1 of 7) protein_coding-intron (ENSMUSG00000028692.14, intron 1 of 8) 3798 ENSMUSG00000028692.14 ENSMUSG00000028692 ENSMUST00000128059 Akr1a1 protein_coding Interval_120870 chr4 151185427 151186744 + 0 NA intron (ENSMUSG00000014592.21, intron 6 of 24) protein_coding-intron (ENSMUSG00000014592.21, intron 6 of 23) 96515 ENSMUSG00000078491.2 ENSMUSG00000078491 ENSMUST00000105667 Gm13090 protein_coding Interval_30519 chr11 94901102 94901889 + 0 NA Intergenic Intergenic -18214 ENSMUSG00000064512.1 ENSMUSG00000064512 ENSMUST00000082578 Gm22456 snRNA Interval_149407 chr7 98188337 98189825 + 0 NA Intergenic Intergenic 10400 ENSMUSG00000074004.3 ENSMUSG00000074004 ENSMUST00000098278 B3gnt6 protein_coding Interval_32250 chr11 106506138 106506445 + 0 NA intron (ENSMUSG00000040548.16, intron 10 of 10) protein_coding-intron (ENSMUSG00000040548.16, intron 11 of 11) 5046 ENSMUSG00000080540.2 ENSMUSG00000080540 ENSMUST00000116890 Gm22711 snoRNA Interval_131683 chr5 139281998 139282737 + 0 NA intron (ENSMUSG00000056413.16, intron 3 of 9) protein_coding-intron (ENSMUSG00000056413.16, intron 4 of 10) 20783 ENSMUSG00000056413.16 ENSMUSG00000056413 ENSMUST00000156815 Adap1 protein_coding Interval_35230 chr12 18550673 18551621 + 0 NA Intergenic Intergenic -8468 ENSMUSG00000113604.1 ENSMUSG00000113604 ENSMUST00000222589 Gm19786 unprocessed_pseudogene Interval_130535 chr5 128613657 128614001 + 0 NA Intergenic Intergenic 12985 ENSMUSG00000081683.5 ENSMUSG00000081683 ENSMUST00000117102 Fzd10 protein_coding Interval_41387 chr12 113220033 113220786 + 0 NA Intergenic Intergenic 6260 ENSMUSG00000087842.1 ENSMUSG00000087842 ENSMUST00000157217 Gm25622 snRNA Interval_101059 chr2 174748180 174748891 + 0 NA Intergenic Intergenic -21387 ENSMUSG00000027524.9 ENSMUSG00000027524 ENSMUST00000162473 Edn3 protein_coding Interval_88802 chr2 11263791 11264216 + 0 NA TTS (ENSMUSG00000026778.13) protein_coding-TTS (ENSMUSG00000026778.13) 13545 ENSMUSG00000026778.13 ENSMUSG00000026778 ENSMUST00000195628 Prkcq protein_coding Interval_18694 chr10 89392533 89393468 + 0 NA Intergenic Intergenic 40842 ENSMUSG00000074802.11 ENSMUSG00000074802 ENSMUST00000219073 Gas2l3 protein_coding Interval_140344 chr6 116767864 116768294 + 0 NA Intergenic Intergenic -2427 ENSMUSG00000088374.1 ENSMUSG00000088374 ENSMUST00000157749 Gm22882 snoRNA Interval_45647 chr13 56522004 56523000 + 0 NA promoter-TSS (ENSMUSG00000035509.17) protein_coding-promoter-TSS (ENSMUSG00000035509.17) -6 ENSMUSG00000035509.17 ENSMUSG00000035509 ENSMUST00000124981 Fbxl21 protein_coding Interval_130874 chr5 132899552 132900185 + 0 NA Intergenic Intergenic 98190 ENSMUSG00000088123.1 ENSMUSG00000088123 ENSMUST00000157498 Gm25722 misc_RNA Interval_157491 chr8 70865115 70866363 + 0 NA TTS (ENSMUSG00000020887.3) TEC-TTS (ENSMUSG00000020887.3) -2481 ENSMUSG00000002908.17 ENSMUSG00000002908 ENSMUST00000212414 Kcnn1 protein_coding Interval_74258 chr17 47762374 47762812 + 0 NA promoter-TSS (ENSMUSG00000023990.18) protein_coding-promoter-TSS (ENSMUSG00000023990.18) -25317 ENSMUSG00000023990.18 ENSMUSG00000023990 ENSMUST00000140715 Tfeb protein_coding Interval_99618 chr2 163617798 163618105 + 0 NA exon (ENSMUSG00000017679.16, exon 4 of 4) protein_coding-exon (ENSMUSG00000017679.16, exon 4 of 4) 15637 ENSMUSG00000017679.16 ENSMUSG00000017679 ENSMUST00000132904 Ttpal protein_coding Interval_51624 chr14 30869303 30870295 + 0 NA promoter-TSS (ENSMUSG00000006526.13) protein_coding-promoter-TSS (ENSMUSG00000006526.13) -9401 ENSMUSG00000042485.7 ENSMUSG00000042485 ENSMUST00000040715 Mustn1 protein_coding Interval_82422 chr18 73893042 73894405 + 0 NA Intergenic Intergenic 34336 ENSMUSG00000064036.15 ENSMUSG00000064036 ENSMUST00000134847 Mro protein_coding Interval_106690 chr3 98960556 98960896 + 0 NA Intergenic Intergenic -19470 ENSMUSG00000085121.2 ENSMUSG00000085121 ENSMUST00000155540 5730437C11Rik lincRNA Interval_15181 chr10 43188013 43188935 + 0 NA Intergenic Intergenic 13775 ENSMUSG00000045008.2 ENSMUSG00000045008 ENSMUST00000053792 9030612E09Rik bidirectional_promoter_lncRNA Interval_27374 chr11 67052019 67053077 + 0 NA promoter-TSS (ENSMUSG00000069844.12) protein_coding-promoter-TSS (ENSMUSG00000069844.12) 43 ENSMUSG00000020910.16 ENSMUSG00000020910 ENSMUST00000146648 Adprm protein_coding Interval_89085 chr2 16032031 16033699 + 0 NA intron (ENSMUSG00000075520.5, intron 29 of 38) protein_coding-intron (ENSMUSG00000075520.5, intron 29 of 38) -9440 ENSMUSG00000103865.1 ENSMUSG00000103865 ENSMUST00000193596 Gm37416 TEC Interval_56607 chr14 120821910 120822120 + 0 NA Intergenic Intergenic -5143 ENSMUSG00000115028.1 ENSMUSG00000115028 ENSMUST00000228417 Gm9391 processed_pseudogene Interval_93354 chr2 72254637 72255858 + 0 NA intron (ENSMUSG00000049044.16, intron 21 of 21) protein_coding-intron (ENSMUSG00000049044.16, intron 27 of 27) -6272 ENSMUSG00000086231.1 ENSMUSG00000086231 ENSMUST00000132792 Rapgef4os3 antisense Interval_13238 chr10 13465441 13465649 + 0 NA intron (ENSMUSG00000062866.16, intron 1 of 12) protein_coding-intron (ENSMUSG00000062866.16, intron 1 of 12) -40492 ENSMUSG00000019810.15 ENSMUSG00000019810 ENSMUST00000166466 Fuca2 protein_coding Interval_127174 chr5 100825789 100826708 + 0 NA Intergenic Intergenic -5033 ENSMUSG00000077354.1 ENSMUSG00000077354 ENSMUST00000104166 Gm26286 snoRNA Interval_25078 chr11 43709091 43710928 + 0 NA intron (ENSMUSG00000044950.7, intron 1 of 1) protein_coding-intron (ENSMUSG00000044950.7, intron 2 of 3) 27461 ENSMUSG00000044950.7 ENSMUSG00000044950 ENSMUST00000130467 Pwwp2a protein_coding Interval_40222 chr12 102622246 102622891 + 0 NA TTS (ENSMUSG00000057963.9) protein_coding-TTS (ENSMUSG00000057963.9) 9888 ENSMUSG00000095174.1 ENSMUSG00000095174 ENSMUST00000178938 Gm20069 antisense Interval_143851 chr7 16755249 16755950 + 0 NA Intergenic Intergenic 17061 ENSMUSG00000008036.11 ENSMUSG00000008036 ENSMUST00000141496 Ap2s1 protein_coding Interval_110836 chr4 8854562 8855498 + 0 NA promoter-TSS (ENSMUSG00000041235.12) protein_coding-promoter-TSS (ENSMUSG00000041235.12) -201 ENSMUSG00000041235.12 ENSMUSG00000041235 ENSMUST00000222546 Chd7 protein_coding Interval_49205 chr13 109432801 109433011 + 0 NA intron (ENSMUSG00000021699.17, intron 2 of 5) protein_coding-intron (ENSMUSG00000021699.17, intron 1 of 14) 108162 ENSMUSG00000076946.2 ENSMUSG00000076946 ENSMUST00000103758 Mir582 miRNA Interval_169091 chr9 92249650 92250949 + 0 NA promoter-TSS (ENSMUSG00000032369.13) protein_coding-promoter-TSS (ENSMUSG00000032369.13) -15996 ENSMUSG00000032369.13 ENSMUSG00000032369 ENSMUST00000187952 Plscr1 protein_coding Interval_57714 chr15 16450369 16450652 + 0 NA Intergenic Intergenic 46302 ENSMUSG00000115614.1 ENSMUSG00000115614 ENSMUST00000227529 Gm41276 lincRNA Interval_99522 chr2 162947551 162948637 + 0 NA promoter-TSS (ENSMUSG00000035576.13) protein_coding-promoter-TSS (ENSMUSG00000035576.13) 4619 ENSMUSG00000035576.13 ENSMUSG00000035576 ENSMUST00000125296 L3mbtl1 protein_coding Interval_86270 chr19 38274281 38274526 + 0 NA intron (ENSMUSG00000067242.11, intron 2 of 2) protein_coding-intron (ENSMUSG00000067242.11, intron 2 of 7) 9826 ENSMUSG00000067242.11 ENSMUSG00000067242 ENSMUST00000130039 Lgi1 protein_coding Interval_92581 chr2 60855059 60855445 + 0 NA intron (ENSMUSG00000026970.16, intron 1 of 13) protein_coding-intron (ENSMUSG00000026970.16, intron 1 of 13) 26186 ENSMUSG00000026970.16 ENSMUSG00000026970 ENSMUST00000128866 Rbms1 protein_coding Interval_43153 chr13 24739563 24739770 + 0 NA Intergenic Intergenic -1566 ENSMUSG00000085861.1 ENSMUSG00000085861 ENSMUST00000136906 Armh2 protein_coding Interval_14192 chr10 28586787 28587048 + 0 NA promoter-TSS (ENSMUSG00000019889.10) protein_coding-promoter-TSS (ENSMUSG00000019889.10) -76 ENSMUSG00000019889.10 ENSMUSG00000019889 ENSMUST00000220404 Ptprk protein_coding Interval_54085 chr14 65105492 65105708 + 0 NA intron (ENSMUSG00000021978.9, intron 1 of 2) protein_coding-intron (ENSMUSG00000021978.9, intron 1 of 2) -7495 ENSMUSG00000021978.9 ENSMUSG00000021978 ENSMUST00000223989 Extl3 protein_coding Interval_97691 chr2 142832651 142833536 + 0 NA intron (ENSMUSG00000038844.10, intron 12 of 26) protein_coding-intron (ENSMUSG00000038844.10, intron 12 of 25) 46197 ENSMUSG00000088134.1 ENSMUSG00000088134 ENSMUST00000157509 Gm22310 snoRNA Interval_77736 chr17 94797192 94797525 + 0 NA intron (ENSMUSG00000066057.7, intron 3 of 4) processed_transcript-intron (ENSMUSG00000066057.7, intron 3 of 3) -5835 ENSMUSG00000117642.1 ENSMUSG00000117642 ENSMUST00000234672 Amd-ps7 processed_pseudogene Interval_79965 chr18 36318939 36320721 + 0 NA Intergenic Intergenic 21151 ENSMUSG00000110185.2 ENSMUSG00000110185 ENSMUST00000210490 Igip protein_coding Interval_157457 chr8 70492578 70494828 + 0 NA intron (ENSMUSG00000007888.15, intron 1 of 3) protein_coding-intron (ENSMUSG00000007888.15, intron 1 of 8) 342 ENSMUSG00000007888.15 ENSMUSG00000007888 ENSMUST00000127983 Crlf1 protein_coding Interval_154723 chr8 22866131 22866659 + 0 NA intron (ENSMUSG00000031540.14, intron 2 of 17) protein_coding-intron (ENSMUSG00000031540.14, intron 3 of 17) 6860 ENSMUSG00000031540.14 ENSMUSG00000031540 ENSMUST00000130718 Kat6a protein_coding Interval_37922 chr12 73068414 73070005 + 0 NA Intergenic Intergenic -26394 ENSMUSG00000051367.8 ENSMUSG00000051367 ENSMUST00000175677 Six1 protein_coding Interval_164175 chr9 32200764 32201417 + 0 NA intron (ENSMUSG00000041444.14, intron 9 of 21) protein_coding-intron (ENSMUSG00000041444.14, intron 4 of 4) -23502 ENSMUSG00000041444.14 ENSMUSG00000041444 ENSMUST00000174730 Arhgap32 protein_coding Interval_146722 chr7 49709010 49710300 + 0 NA Intergenic Intergenic -49460 ENSMUSG00000039745.8 ENSMUSG00000039745 ENSMUST00000207895 Htatip2 protein_coding Interval_30421 chr11 94269502 94270225 + 0 NA Intergenic Intergenic -12010 ENSMUSG00000094091.3 ENSMUSG00000094091 ENSMUST00000178891 Gm21885 protein_coding Interval_174070 chrX 134275773 134277172 + 0 NA intron (ENSMUSG00000067369.12, intron 1 of 13) protein_coding-intron (ENSMUSG00000067369.12, intron 1 of 3) 455 ENSMUSG00000067369.12 ENSMUSG00000067369 ENSMUST00000087540 Trmt2b protein_coding Interval_113185 chr4 49240931 49241129 + 0 NA intron (ENSMUSG00000063446.4, intron 2 of 3) protein_coding-intron (ENSMUSG00000063446.4, intron 2 of 7) -48268 ENSMUSG00000064782.1 ENSMUSG00000064782 ENSMUST00000082848 Gm22685 snRNA Interval_159390 chr8 94262208 94262851 + 0 NA intron (ENSMUSG00000032939.14, intron 4 of 22) protein_coding-intron (ENSMUSG00000032939.14, intron 3 of 21) -10897 ENSMUSG00000110442.1 ENSMUSG00000110442 ENSMUST00000212137 Gm45804 TEC Interval_36654 chr12 51779058 51779243 + 0 NA TTS (ENSMUSG00000035247.16) protein_coding-TTS (ENSMUSG00000035247.16) 3431 ENSMUSG00000035247.16 ENSMUSG00000035247 ENSMUST00000217804 Hectd1 protein_coding Interval_114481 chr4 80866258 80866510 + 0 NA Intergenic Intergenic 19796 ENSMUSG00000005994.14 ENSMUSG00000005994 ENSMUST00000133932 Tyrp1 protein_coding Interval_78309 chr18 11887465 11888337 + 0 NA intron (ENSMUSG00000040957.15, intron 2 of 8) protein_coding-intron (ENSMUSG00000040957.15, intron 2 of 8) -25230 ENSMUSG00000117430.1 ENSMUSG00000117430 ENSMUST00000234828 Gm49968 TEC Interval_51887 chr14 33350917 33351843 + 0 NA promoter-TSS (ENSMUSG00000063506.14) protein_coding-promoter-TSS (ENSMUSG00000063506.14) 18763 ENSMUSG00000087639.1 ENSMUSG00000087639 ENSMUST00000137359 Gm15512 antisense Interval_25522 chr11 49535160 49535517 + 0 NA exon (ENSMUSG00000063827.2, exon 1 of 1) protein_coding-exon (ENSMUSG00000063827.2, exon 1 of 1) 7053 ENSMUSG00000063827.2 ENSMUSG00000063827 ENSMUST00000074543 Olfr1382 protein_coding Interval_93406 chr2 72874430 72874756 + 0 NA Intergenic Intergenic -60876 ENSMUSG00000085427.7 ENSMUSG00000085427 ENSMUST00000125746 6430710C18Rik lincRNA Interval_131968 chr5 141455554 141455789 + 0 NA intron (ENSMUSG00000039683.16, intron 1 of 9) protein_coding-intron (ENSMUSG00000039683.16, intron 1 of 44) -74745 ENSMUSG00000084934.1 ENSMUSG00000084934 ENSMUST00000153879 Gm16035 antisense Interval_105075 chr3 81001280 81001676 + 0 NA TTS (ENSMUSG00000103419.1) unprocessed_pseudogene-TTS (ENSMUSG00000103419.1) 484 ENSMUSG00000103419.1 ENSMUSG00000103419 ENSMUST00000194419 Gm29808 unprocessed_pseudogene Interval_83032 chr18 80616997 80617200 + 0 NA intron (ENSMUSG00000033016.16, intron 9 of 9) protein_coding-intron (ENSMUSG00000033016.16, intron 9 of 9) -8123 ENSMUSG00000033016.16 ENSMUSG00000033016 ENSMUST00000236711 Nfatc1 protein_coding Interval_151674 chr7 125954354 125954746 + 0 NA intron (ENSMUSG00000046182.8, intron 3 of 6) protein_coding-intron (ENSMUSG00000046182.8, intron 3 of 6) 109897 ENSMUSG00000108376.1 ENSMUSG00000108376 ENSMUST00000206586 Gm44874 TEC Interval_73366 chr17 36788912 36789272 + 0 NA Intergenic Intergenic 16182 ENSMUSG00000037246.6 ENSMUSG00000037246 ENSMUST00000041531 H2-M10.5 protein_coding Interval_1960 chr1 34961396 34962717 + 0 NA Intergenic Intergenic 7799 ENSMUSG00000103548.1 ENSMUSG00000103548 ENSMUST00000193622 Gm37670 processed_pseudogene Interval_105867 chr3 89826053 89826875 + 0 NA Intergenic Intergenic 5466 ENSMUSG00000106564.1 ENSMUSG00000106564 ENSMUST00000199694 Gm8969 processed_pseudogene Interval_163390 chr9 21223596 21225227 + 0 NA promoter-TSS (ENSMUSG00000097439.6) antisense-promoter-TSS (ENSMUSG00000097439.6) -960 ENSMUSG00000097439.6 ENSMUSG00000097439 ENSMUST00000193429 Gm16754 antisense Interval_162313 chr8 126987738 126989604 + 0 NA Intergenic Intergenic -6439 ENSMUSG00000110648.1 ENSMUSG00000110648 ENSMUST00000211855 Gm38574 processed_pseudogene Interval_162668 chr9 7682179 7682412 + 0 NA intron (ENSMUSG00000086381.1, intron 1 of 3) antisense-intron (ENSMUSG00000086381.1, intron 1 of 3) 7541 ENSMUSG00000110936.1 ENSMUSG00000110936 ENSMUST00000216642 Gm19212 processed_pseudogene Interval_10517 chr1 171433182 171433901 + 0 NA Intergenic Intergenic 13822 ENSMUSG00000103711.1 ENSMUSG00000103711 ENSMUST00000194029 Tstd1 protein_coding Interval_100827 chr2 172756340 172757664 + 0 NA Intergenic Intergenic 107339 ENSMUSG00000093160.1 ENSMUSG00000093160 ENSMUST00000175419 Gm22773 miRNA Interval_416 chr1 5075899 5077267 + 0 NA intron (ENSMUSG00000033793.12, intron 1 of 12) protein_coding-intron (ENSMUSG00000033793.12, intron 1 of 12) -6549 ENSMUSG00000033793.12 ENSMUSG00000033793 ENSMUST00000192142 Atp6v1h protein_coding Interval_110703 chr4 6592481 6593529 + 0 NA Intergenic Intergenic 41290 ENSMUSG00000077302.1 ENSMUSG00000077302 ENSMUST00000104114 Gm22473 snoRNA Interval_100210 chr2 167660283 167662190 + 0 NA promoter-TSS (ENSMUSG00000085914.1) antisense-promoter-TSS (ENSMUSG00000085914.1) 260 ENSMUSG00000089739.2 ENSMUSG00000089739 ENSMUST00000125544 Gm20431 protein_coding Interval_166645 chr9 61576199 61576527 + 0 NA Intergenic Intergenic 66640 ENSMUSG00000111381.1 ENSMUSG00000111381 ENSMUST00000213400 Gm34424 transcribed_processed_pseudogene Interval_56834 chr14 122340874 122342334 + 0 NA intron (ENSMUSG00000025545.10, intron 2 of 7) protein_coding-intron (ENSMUSG00000025545.10, intron 2 of 7) 46556 ENSMUSG00000095311.1 ENSMUSG00000095311 ENSMUST00000175481 Gm25464 snRNA Interval_76442 chr17 80223919 80225410 + 0 NA exon (ENSMUSG00000055760.12, exon 1 of 3) protein_coding-exon (ENSMUSG00000055760.12, exon 1 of 3) 223 ENSMUSG00000055760.12 ENSMUSG00000055760 ENSMUST00000069486 Gemin6 protein_coding Interval_31416 chr11 100555680 100556276 + 0 NA intron (ENSMUSG00000006784.14, intron 7 of 9) protein_coding-intron (ENSMUSG00000006784.14, intron 7 of 10) -3479 ENSMUSG00000118532.1 ENSMUSG00000118532 ENSMUST00000239071 BX842667.1 unprocessed_pseudogene Interval_146497 chr7 46412449 46412851 + 0 NA intron (ENSMUSG00000058975.7, intron 1 of 3) protein_coding-intron (ENSMUSG00000058975.7, intron 1 of 1) 15002 ENSMUSG00000058975.7 ENSMUSG00000058975 ENSMUST00000160234 Kcnc1 protein_coding Interval_54054 chr14 64810481 64811477 + 0 NA TTS (ENSMUSG00000021972.14) protein_coding-TTS (ENSMUSG00000021972.14) -28121 ENSMUSG00000098837.1 ENSMUSG00000098837 ENSMUST00000184830 Gm20111 processed_pseudogene Interval_104070 chr3 58162394 58162589 + 0 NA exon (ENSMUSG00000104586.1, exon 2 of 2) lincRNA-exon (ENSMUSG00000104586.1, exon 2 of 2) 1316 ENSMUSG00000100666.1 ENSMUSG00000100666 ENSMUST00000188418 1700007F19Rik lincRNA Interval_19581 chr10 103745590 103745851 + 0 NA Intergenic Intergenic 112612 ENSMUSG00000112554.1 ENSMUSG00000112554 ENSMUST00000218181 Gm47224 lincRNA Interval_59623 chr15 56685544 56685999 + 0 NA intron (ENSMUSG00000022367.7, intron 1 of 3) protein_coding-intron (ENSMUSG00000022367.7, intron 1 of 3) -7781 ENSMUSG00000086541.8 ENSMUSG00000086541 ENSMUST00000165880 Has2os processed_transcript Interval_147071 chr7 60727940 60728568 + 0 NA Intergenic Intergenic 25759 ENSMUSG00000109222.1 ENSMUSG00000109222 ENSMUST00000207136 Gm10297 processed_pseudogene Interval_28537 chr11 76589014 76589844 + 0 NA intron (ENSMUSG00000017631.19, intron 1 of 22) protein_coding-intron (ENSMUSG00000017631.19, intron 1 of 3) -11890 ENSMUSG00000024205.7 ENSMUSG00000024205 ENSMUST00000136893 Rpl36-ps2 processed_pseudogene Interval_139382 chr6 99669434 99671263 + 0 NA Intergenic Intergenic -3577 ENSMUSG00000093661.1 ENSMUSG00000093661 ENSMUST00000032151 Eif4e3 protein_coding Interval_137808 chr6 82694611 82695621 + 0 NA TTS (ENSMUSG00000107453.1) antisense-TTS (ENSMUSG00000107453.1) 10249 ENSMUSG00000030042.15 ENSMUSG00000030042 ENSMUST00000140281 Pole4 protein_coding Interval_68652 chr16 83603731 83604317 + 0 NA Intergenic Intergenic 38497 ENSMUSG00000116533.1 ENSMUSG00000116533 ENSMUST00000232058 Gm49561 processed_pseudogene Interval_893 chr1 13037308 13037636 + 0 NA Intergenic Intergenic 22479 ENSMUSG00000104518.1 ENSMUSG00000104518 ENSMUST00000191708 Gm37162 TEC Interval_158170 chr8 79482845 79484030 + 0 NA Intergenic Intergenic 6749 ENSMUSG00000109851.1 ENSMUSG00000109851 ENSMUST00000210554 Gm39288 processed_pseudogene Interval_161502 chr8 120773554 120773773 + 0 NA intron (ENSMUSG00000092329.1, intron 1 of 15) protein_coding-intron (ENSMUSG00000092329.1, intron 1 of 15) 37304 ENSMUSG00000041515.10 ENSMUSG00000041515 ENSMUST00000160594 Irf8 protein_coding Interval_61905 chr15 85056942 85058557 + 0 NA intron (ENSMUSG00000022434.8, intron 2 of 4) protein_coding-intron (ENSMUSG00000022434.8, intron 7 of 8) 20562 ENSMUSG00000022434.8 ENSMUSG00000022434 ENSMUST00000229691 Fam118a protein_coding Interval_102365 chr3 22198758 22199593 + 0 NA intron (ENSMUSG00000027630.13, intron 10 of 15) protein_coding-intron (ENSMUSG00000027630.13, intron 10 of 15) -52199 ENSMUSG00000087775.1 ENSMUSG00000087775 ENSMUST00000157150 Rprl2 ribozyme Interval_73858 chr17 44702410 44702790 + 0 NA intron (ENSMUSG00000039153.17, intron 4 of 6) protein_coding-intron (ENSMUSG00000039153.17, intron 4 of 7) -7622 ENSMUSG00000089849.1 ENSMUSG00000089849 ENSMUST00000161664 Runx2os2 antisense Interval_134162 chr6 22136901 22137220 + 0 NA intron (ENSMUSG00000062980.15, intron 1 of 3) protein_coding-intron (ENSMUSG00000062980.15, intron 12 of 21) 108874 ENSMUSG00000106736.1 ENSMUSG00000106736 ENSMUST00000202327 Gm42573 processed_pseudogene Interval_75424 chr17 66479042 66481074 + 0 NA Intergenic Intergenic 30204 ENSMUSG00000117003.1 ENSMUSG00000117003 ENSMUST00000233518 Gm49937 bidirectional_promoter_lncRNA Interval_61425 chr15 81544945 81545829 + 0 NA Intergenic Intergenic 39641 ENSMUSG00000103520.1 ENSMUSG00000103520 ENSMUST00000192082 1110025M09Rik TEC Interval_135184 chr6 37351586 37352511 + 0 NA intron (ENSMUSG00000038648.5, intron 8 of 11) protein_coding-intron (ENSMUSG00000038648.5, intron 8 of 11) -15513 ENSMUSG00000038648.5 ENSMUSG00000038648 ENSMUST00000128534 Creb3l2 protein_coding Interval_133695 chr6 8809737 8810523 + 0 NA Intergenic Intergenic -51731 ENSMUSG00000062995.12 ENSMUSG00000062995 ENSMUST00000151758 Ica1 protein_coding Interval_45692 chr13 57000414 57002006 + 0 NA Intergenic Intergenic -70262 ENSMUSG00000077279.1 ENSMUSG00000077279 ENSMUST00000104091 Gm22777 snoRNA Interval_114193 chr4 66717915 66718554 + 0 NA Intergenic Intergenic 7310 ENSMUSG00000082053.1 ENSMUSG00000082053 ENSMUST00000118844 Gm11220 processed_pseudogene Interval_26123 chr11 54544448 54544640 + 0 NA intron (ENSMUSG00000037533.20, intron 2 of 28) protein_coding-intron (ENSMUSG00000037533.20, intron 2 of 28) 79984 ENSMUSG00000035992.15 ENSMUSG00000035992 ENSMUST00000143650 Fnip1 protein_coding Interval_132115 chr5 142820323 142820569 + 0 NA Intergenic Intergenic 32753 ENSMUSG00000082308.1 ENSMUSG00000082308 ENSMUST00000117498 Gm15770 processed_pseudogene Interval_149429 chr7 98447380 98448436 + 0 NA intron (ENSMUSG00000074003.4, intron 2 of 18) protein_coding-intron (ENSMUSG00000074003.4, intron 1 of 17) -7352 ENSMUSG00000108764.1 ENSMUSG00000108764 ENSMUST00000205625 Gm2926 processed_pseudogene Interval_169612 chr9 99435457 99438517 + 0 NA promoter-TSS (ENSMUSG00000032470.17) protein_coding-promoter-TSS (ENSMUSG00000032470.17) -14488 ENSMUSG00000046242.8 ENSMUSG00000046242 ENSMUST00000056103 Nme9 protein_coding Interval_133366 chr6 3904738 3904976 + 0 NA Intergenic Intergenic -41421 ENSMUSG00000108091.1 ENSMUSG00000108091 ENSMUST00000203552 Gm44221 processed_pseudogene Interval_162608 chr9 6347911 6348300 + 0 NA intron (ENSMUSG00000032006.15, intron 5 of 5) protein_coding-intron (ENSMUSG00000032006.15, intron 5 of 6) -78259 ENSMUSG00000047619.5 ENSMUSG00000047619 ENSMUST00000051706 Ddi1 protein_coding Interval_13362 chr10 17178570 17179005 + 0 NA Intergenic Intergenic 61983 ENSMUSG00000088436.1 ENSMUSG00000088436 ENSMUST00000157811 Gm25382 snRNA Interval_19545 chr10 102954192 102954469 + 0 NA Intergenic Intergenic 74786 ENSMUSG00000036602.14 ENSMUSG00000036602 ENSMUST00000218508 Alx1 protein_coding Interval_21633 chr11 3359280 3359530 + 0 NA intron (ENSMUSG00000020451.17, intron 2 of 3) protein_coding-intron (ENSMUSG00000020451.17, intron 3 of 15) -4494 ENSMUSG00000087055.1 ENSMUSG00000087055 ENSMUST00000142322 Gm11948 sense_intronic Interval_32384 chr11 107263839 107266135 + 0 NA intron (ENSMUSG00000040430.18, intron 5 of 7) protein_coding-intron (ENSMUSG00000040430.18, intron 4 of 7) -65721 ENSMUSG00000081995.1 ENSMUSG00000081995 ENSMUST00000119399 Gm11719 processed_pseudogene Interval_102987 chr3 34035368 34036612 + 0 NA intron (ENSMUSG00000027680.15, intron 1 of 14) protein_coding-intron (ENSMUSG00000027680.15, intron 1 of 16) -10642 ENSMUSG00000027680.15 ENSMUSG00000027680 ENSMUST00000200425 Fxr1 protein_coding Interval_43674 chr13 34864517 34864919 + 0 NA Intergenic Intergenic 1859 ENSMUSG00000114127.1 ENSMUSG00000114127 ENSMUST00000221617 Gm8231 processed_pseudogene Interval_25958 chr11 53132636 53133047 + 0 NA intron (ENSMUSG00000036264.9, intron 6 of 15) protein_coding-intron (ENSMUSG00000036264.9, intron 6 of 15) -12785 ENSMUSG00000087668.1 ENSMUSG00000087668 ENSMUST00000137096 Gm11186 antisense Interval_139247 chr6 97526115 97526388 + 0 NA intron (ENSMUSG00000030064.16, intron 2 of 7) protein_coding-intron (ENSMUSG00000030064.16, intron 2 of 23) 21316 ENSMUSG00000064724.1 ENSMUSG00000064724 ENSMUST00000082790 Gm25852 snoRNA Interval_157397 chr8 70117561 70117959 + 0 NA intron (ENSMUSG00000002341.8, intron 1 of 14) protein_coding-intron (ENSMUSG00000002341.8, intron 1 of 14) 3113 ENSMUSG00000002341.8 ENSMUSG00000002341 ENSMUST00000002412 Ncan protein_coding Interval_32872 chr11 112633221 112633843 + 0 NA Intergenic Intergenic 77808 ENSMUSG00000041674.16 ENSMUSG00000041674 ENSMUST00000148724 BC006965 processed_transcript Interval_104327 chr3 63447810 63448398 + 0 NA intron (ENSMUSG00000104336.1, intron 2 of 2) lincRNA-intron (ENSMUSG00000104336.1, intron 2 of 2) 8853 ENSMUSG00000104336.1 ENSMUSG00000104336 ENSMUST00000192500 Gm34240 lincRNA Interval_164382 chr9 36587427 36587819 + 0 NA Intergenic Intergenic -4988 ENSMUSG00000091248.1 ENSMUSG00000091248 ENSMUST00000170030 Pate8 protein_coding Interval_37642 chr12 70752213 70753679 + 0 NA intron (ENSMUSG00000113900.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000113900.1, intron 1 of 2) -71096 ENSMUSG00000112950.1 ENSMUSG00000112950 ENSMUST00000222630 Gm32369 lincRNA Interval_119255 chr4 136486794 136487063 + 0 NA intron (ENSMUSG00000001089.14, intron 1 of 1) protein_coding-intron (ENSMUSG00000001089.14, intron 1 of 3) 17167 ENSMUSG00000001089.14 ENSMUSG00000001089 ENSMUST00000168936 Luzp1 protein_coding Interval_63787 chr15 103405278 103406463 + 0 NA intron (ENSMUSG00000022487.14, intron 7 of 8) protein_coding-intron (ENSMUSG00000022487.14, intron 7 of 8) 24479 ENSMUSG00000022487.14 ENSMUSG00000022487 ENSMUST00000129837 Gtsf1 protein_coding Interval_116578 chr4 115846455 115846664 + 0 NA intron (ENSMUSG00000028708.16, intron 2 of 7) protein_coding-intron (ENSMUSG00000028708.16, intron 1 of 12) 7326 ENSMUSG00000028708.16 ENSMUSG00000028708 ENSMUST00000135209 Mknk1 protein_coding Interval_46610 chr13 67561811 67562197 + 0 NA TTS (ENSMUSG00000097360.8) antisense-TTS (ENSMUSG00000097360.8) -8174 ENSMUSG00000095432.9 ENSMUSG00000095432 ENSMUST00000053289 Zfp748 protein_coding Interval_93868 chr2 77752375 77753885 + 0 NA intron (ENSMUSG00000027016.17, intron 1 of 3) protein_coding-intron (ENSMUSG00000027016.17, intron 1 of 3) -49858 ENSMUSG00000027016.17 ENSMUSG00000027016 ENSMUST00000129077 Zfp385b protein_coding Interval_31707 chr11 102356743 102357365 + 0 NA exon (ENSMUSG00000006574.15, exon 10 of 20) protein_coding-exon (ENSMUSG00000006574.15, exon 10 of 20) 9149 ENSMUSG00000006574.15 ENSMUSG00000006574 ENSMUST00000151050 Slc4a1 protein_coding Interval_161124 chr8 117626031 117626957 + 0 NA intron (ENSMUSG00000034330.10, intron 31 of 32) protein_coding-intron (ENSMUSG00000034330.10, intron 31 of 32) 47195 ENSMUSG00000034308.13 ENSMUSG00000034308 ENSMUST00000174450 Sdr42e1 protein_coding Interval_74644 chr17 54248701 54249250 + 0 NA Intergenic Intergenic 25462 ENSMUSG00000102572.1 ENSMUSG00000102572 ENSMUST00000193122 Gm37966 TEC Interval_12897 chr10 7862078 7862374 + 0 NA intron (ENSMUSG00000039981.6, intron 3 of 5) protein_coding-intron (ENSMUSG00000039981.6, intron 3 of 5) -13745 ENSMUSG00000088857.1 ENSMUSG00000088857 ENSMUST00000158232 Gm24726 snoRNA Interval_148796 chr7 87852153 87852424 + 0 NA intron (ENSMUSG00000049583.15, intron 2 of 8) protein_coding-intron (ENSMUSG00000049583.15, intron 2 of 7) -38461 ENSMUSG00000108893.1 ENSMUSG00000108893 ENSMUST00000207573 Gm44927 TEC Interval_143801 chr7 16399342 16401585 + 0 NA promoter-TSS (ENSMUSG00000059273.9) protein_coding-promoter-TSS (ENSMUSG00000059273.9) -447 ENSMUSG00000059273.9 ENSMUSG00000059273 ENSMUST00000209374 Zc3h4 protein_coding Interval_124238 chr5 41860898 41861129 + 0 NA Intergenic Intergenic -6812 ENSMUSG00000107259.1 ENSMUSG00000107259 ENSMUST00000201122 Gm5298 processed_pseudogene Interval_153370 chr7 144097082 144097820 + 0 NA intron (ENSMUSG00000037541.22, intron 8 of 17) protein_coding-intron (ENSMUSG00000037541.22, intron 9 of 22) 13634 ENSMUSG00000109500.1 ENSMUSG00000109500 ENSMUST00000207456 Gm44999 TEC Interval_120337 chr4 147985289 147986584 + 0 NA exon (ENSMUSG00000029019.8, exon 1 of 3) protein_coding-exon (ENSMUSG00000029019.8, exon 1 of 3) 148 ENSMUSG00000029019.8 ENSMUSG00000029019 ENSMUST00000103231 Nppb protein_coding Interval_40294 chr12 103266805 103267562 + 0 NA Intergenic Intergenic -25055 ENSMUSG00000041669.15 ENSMUSG00000041669 ENSMUST00000155547 Prima1 protein_coding Interval_119639 chr4 138901592 138902409 + 0 NA intron (ENSMUSG00000041161.8, intron 3 of 7) protein_coding-intron (ENSMUSG00000041161.8, intron 3 of 7) 11945 ENSMUSG00000041161.8 ENSMUSG00000041161 ENSMUST00000097830 Otud3 protein_coding Interval_37100 chr12 58212202 58214954 + 0 NA exon (ENSMUSG00000035431.4, exon 2 of 3) protein_coding-exon (ENSMUSG00000035431.4, exon 2 of 3) 1806 ENSMUSG00000035431.4 ENSMUSG00000035431 ENSMUST00000044299 Sstr1 protein_coding Interval_147234 chr7 64895147 64896794 + 0 NA intron (ENSMUSG00000030518.17, intron 2 of 9) protein_coding-intron (ENSMUSG00000030518.17, intron 2 of 9) -22973 ENSMUSG00000070520.4 ENSMUSG00000070520 ENSMUST00000094331 Nsmce3 protein_coding Interval_37728 chr12 71460637 71461287 + 0 NA intron (ENSMUSG00000113441.1, intron 5 of 5) lincRNA-intron (ENSMUSG00000113441.1, intron 5 of 5) -27323 ENSMUSG00000113630.1 ENSMUSG00000113630 ENSMUST00000220948 4930404H11Rik lincRNA Interval_133322 chr5 151714367 151714619 + 0 NA Intergenic Intergenic -12025 ENSMUSG00000092806.2 ENSMUSG00000092806 ENSMUST00000175065 Gm26463 miRNA Interval_44867 chr13 49215339 49216564 + 0 NA promoter-TSS (ENSMUSG00000037960.11) protein_coding-promoter-TSS (ENSMUSG00000037960.11) -11835 ENSMUSG00000037960.11 ENSMUSG00000037960 ENSMUST00000223159 Card19 protein_coding Interval_2984 chr1 51885519 51885941 + 0 NA intron (ENSMUSG00000018417.14, intron 1 of 6) protein_coding-intron (ENSMUSG00000018417.14, intron 1 of 30) -6122 ENSMUSG00000100313.1 ENSMUSG00000100313 ENSMUST00000186817 Gm28323 sense_intronic Interval_2378 chr1 38795194 38797231 + 0 NA exon (ENSMUSG00000048814.11, exon 11 of 11) protein_coding-exon (ENSMUSG00000048814.11, exon 11 of 11) 29028 ENSMUSG00000103531.1 ENSMUSG00000103531 ENSMUST00000192930 2610300A13Rik TEC Interval_68568 chr16 78874756 78875041 + 0 NA Intergenic Intergenic -56379 ENSMUSG00000022860.15 ENSMUSG00000022860 ENSMUST00000231883 Chodl protein_coding Interval_120993 chr4 152113624 152114510 + 0 NA exon (ENSMUSG00000039713.17, exon 20 of 20) protein_coding-exon (ENSMUSG00000039713.17, exon 20 of 20) -3904 ENSMUSG00000024793.14 ENSMUSG00000024793 ENSMUST00000153619 Tnfrsf25 protein_coding Interval_84289 chr19 9876628 9877045 + 0 NA TTS (ENSMUSG00000024660.9) protein_coding-TTS (ENSMUSG00000024660.9) -7841 ENSMUSG00000118138.1 ENSMUSG00000118138 ENSMUST00000235839 Gm50322 lincRNA Interval_45612 chr13 56251317 56252757 + 0 NA exon (ENSMUSG00000048904.5, exon 1 of 1) protein_coding-exon (ENSMUSG00000048904.5, exon 1 of 1) 126 ENSMUSG00000048904.5 ENSMUSG00000048904 ENSMUST00000058475 Neurog1 protein_coding Interval_74176 chr17 46912104 46913249 + 0 NA intron (ENSMUSG00000023978.5, intron 1 of 1) protein_coding-intron (ENSMUSG00000023978.5, intron 1 of 2) 2198 ENSMUSG00000023978.5 ENSMUSG00000023978 ENSMUST00000162469 Prph2 protein_coding Interval_23633 chr11 23987487 23987703 + 0 NA Intergenic Intergenic -27060 ENSMUSG00000104783.1 ENSMUSG00000104783 ENSMUST00000199670 Gm44381 miRNA Interval_67129 chr16 43700577 43701873 + 0 NA intron (ENSMUSG00000116684.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000116684.1, intron 1 of 2) 9607 ENSMUSG00000116684.1 ENSMUSG00000116684 ENSMUST00000232267 Gm49735 lincRNA Interval_88217 chr19 60755547 60757309 + 0 NA exon (ENSMUSG00000072437.4, exon 1 of 1) protein_coding-exon (ENSMUSG00000072437.4, exon 1 of 1) 441 ENSMUSG00000072437.4 ENSMUSG00000072437 ENSMUST00000088237 Nanos1 protein_coding Interval_32076 chr11 105137393 105137652 + 0 NA promoter-TSS (ENSMUSG00000020691.13) protein_coding-promoter-TSS (ENSMUSG00000020691.13) -41 ENSMUSG00000020691.13 ENSMUSG00000020691 ENSMUST00000155460 Mettl2 protein_coding Interval_152885 chr7 139475107 139475926 + 0 NA intron (ENSMUSG00000025477.14, intron 1 of 3) protein_coding-intron (ENSMUSG00000025477.14, intron 2 of 15) -41143 ENSMUSG00000025477.14 ENSMUSG00000025477 ENSMUST00000152475 Inpp5a protein_coding Interval_4985 chr1 83660818 83661709 + 0 NA intron (ENSMUSG00000100580.6, intron 4 of 4) lincRNA-intron (ENSMUSG00000100580.6, intron 4 of 4) -134649 ENSMUSG00000094946.1 ENSMUSG00000094946 ENSMUST00000178653 Gm25754 miRNA Interval_43522 chr13 32637487 32637729 + 0 NA intron (ENSMUSG00000118652.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000118652.1, intron 1 of 2) 23592 ENSMUSG00000118652.1 ENSMUSG00000118652 ENSMUST00000239419 AL645799.1 lincRNA Interval_36431 chr12 44503647 44503902 + 0 NA intron (ENSMUSG00000020598.16, intron 3 of 24) protein_coding-intron (ENSMUSG00000020598.16, intron 3 of 30) 93984 ENSMUSG00000112448.1 ENSMUSG00000112448 ENSMUST00000218248 Gm48182 TEC Interval_100799 chr2 172584747 172586653 + 0 NA Intergenic Intergenic 34709 ENSMUSG00000028640.11 ENSMUSG00000028640 ENSMUST00000142633 Tfap2c protein_coding Interval_113597 chr4 56913729 56914983 + 0 NA TTS (ENSMUSG00000064595.1) snoRNA-TTS (ENSMUSG00000064595.1) 714 ENSMUSG00000064595.1 ENSMUSG00000064595 ENSMUST00000082661 Gm22300 snoRNA Interval_68060 chr16 64799648 64800442 + 0 NA intron (ENSMUSG00000047141.5, intron 3 of 8) protein_coding-intron (ENSMUSG00000047141.5, intron 3 of 8) -33389 ENSMUSG00000059920.9 ENSMUSG00000059920 ENSMUST00000076991 4930453N24Rik protein_coding Interval_170813 chr9 110927482 110927967 + 0 NA Intergenic Intergenic 2321 ENSMUSG00000096245.1 ENSMUSG00000096245 ENSMUST00000179216 Gm24269 miRNA Interval_67550 chr16 50699591 50700903 + 0 NA Intergenic Intergenic -26885 ENSMUSG00000098482.1 ENSMUSG00000098482 ENSMUST00000184880 Mir6363 miRNA Interval_119365 chr4 137233533 137235162 + 0 NA Intergenic Intergenic -11025 ENSMUSG00000082149.1 ENSMUSG00000082149 ENSMUST00000119286 Gm13002 processed_pseudogene Interval_15213 chr10 43397654 43398894 + 0 NA intron (ENSMUSG00000038240.13, intron 2 of 2) protein_coding-intron (ENSMUSG00000038240.13, intron 6 of 7) -14257 ENSMUSG00000110772.1 ENSMUSG00000110772 ENSMUST00000216518 Gm47856 TEC Interval_110329 chr3 156973075 156973262 + 0 NA intron (ENSMUSG00000040037.13, intron 2 of 2) protein_coding-intron (ENSMUSG00000040037.13, intron 2 of 6) -27249 ENSMUSG00000106018.1 ENSMUSG00000106018 ENSMUST00000198749 Gm43527 TEC Interval_44747 chr13 48183511 48183741 + 0 NA intron (ENSMUSG00000114457.1, intron 2 of 3) antisense-intron (ENSMUSG00000097622.2, intron 1 of 2) 53625 ENSMUSG00000114457.1 ENSMUSG00000114457 ENSMUST00000225626 Gm36346 lincRNA Interval_12378 chr1 192778267 192779425 + 0 NA Intergenic Intergenic -7854 ENSMUSG00000037375.16 ENSMUSG00000037375 ENSMUST00000192946 Hhat protein_coding Interval_153894 chr8 10833058 10834161 + 0 NA Intergenic Intergenic -24481 ENSMUSG00000096258.2 ENSMUSG00000096258 ENSMUST00000179126 Rps16-ps3 processed_pseudogene Interval_58630 chr15 36691070 36691330 + 0 NA intron (ENSMUSG00000115834.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000115834.1, intron 1 of 1) 1097 ENSMUSG00000115834.1 ENSMUSG00000115834 ENSMUST00000226323 Gm10385 lincRNA Interval_16618 chr10 66090406 66090642 + 0 NA Intergenic Intergenic 33540 ENSMUSG00000100000.6 ENSMUSG00000100000 ENSMUST00000188279 1700023F02Rik lincRNA Interval_21912 chr11 5145770 5145977 + 0 NA intron (ENSMUSG00000034164.17, intron 1 of 14) protein_coding-intron (ENSMUSG00000034164.17, intron 1 of 14) 6367 ENSMUSG00000034164.17 ENSMUSG00000034164 ENSMUST00000138551 Emid1 protein_coding Interval_66999 chr16 39198504 39198841 + 0 NA Intergenic Intergenic -9766 ENSMUSG00000116965.1 ENSMUSG00000116965 ENSMUST00000231748 Gm36742 lincRNA Interval_61729 chr15 83628614 83629635 + 0 NA intron (ENSMUSG00000016763.15, intron 9 of 21) protein_coding-intron (ENSMUSG00000016763.15, intron 10 of 22) -15385 ENSMUSG00000016763.15 ENSMUSG00000016763 ENSMUST00000229057 Scube1 protein_coding Interval_45372 chr13 54709247 54709497 + 0 NA intron (ENSMUSG00000034918.8, intron 1 of 31) protein_coding-intron (ENSMUSG00000034918.8, intron 1 of 31) 7911 ENSMUSG00000034918.8 ENSMUSG00000034918 ENSMUST00000037145 Cdhr2 protein_coding Interval_173076 chrX 70569544 70569791 + 0 NA Intergenic Intergenic -5058 ENSMUSG00000082083.2 ENSMUSG00000082083 ENSMUST00000122196 Gm14728 unprocessed_pseudogene Interval_103606 chr3 51141471 51142872 + 0 NA Intergenic Intergenic 38511 ENSMUSG00000103464.1 ENSMUSG00000103464 ENSMUST00000194318 Gm38246 lincRNA Interval_152793 chr7 137650019 137650504 + 0 NA TTS (ENSMUSG00000110145.1) TEC-TTS (ENSMUSG00000110145.1) 1172 ENSMUSG00000110145.1 ENSMUSG00000110145 ENSMUST00000210825 Gm45683 TEC Interval_161077 chr8 117327447 117327769 + 0 NA intron (ENSMUSG00000034390.16, intron 1 of 10) protein_coding-intron (ENSMUSG00000034390.16, intron 1 of 20) -95808 ENSMUSG00000034390.16 ENSMUSG00000034390 ENSMUST00000212884 Cmip protein_coding Interval_166455 chr9 59616767 59617913 + 0 NA promoter-TSS (ENSMUSG00000025237.16) protein_coding-promoter-TSS (ENSMUSG00000025237.16) 14682 ENSMUSG00000032297.11 ENSMUSG00000032297 ENSMUST00000129728 Celf6 protein_coding Interval_76396 chr17 79918488 79920476 + 0 NA Intergenic Intergenic 15090 ENSMUSG00000117458.1 ENSMUSG00000117458 ENSMUST00000234229 Gm6552 processed_pseudogene Interval_27791 chr11 70014741 70015910 + 0 NA promoter-TSS (ENSMUSG00000018574.14) protein_coding-promoter-TSS (ENSMUSG00000018574.14) 52 ENSMUSG00000018574.14 ENSMUSG00000018574 ENSMUST00000145478 Acadvl protein_coding Interval_27522 chr11 68384647 68387604 + 0 NA exon (ENSMUSG00000020902.12, exon 2 of 7) protein_coding-exon (ENSMUSG00000020902.12, exon 2 of 7) 887 ENSMUSG00000020902.12 ENSMUSG00000020902 ENSMUST00000135141 Ntn1 protein_coding Interval_152549 chr7 134246183 134247368 + 0 NA Intergenic Intergenic -14644 ENSMUSG00000054555.11 ENSMUSG00000054555 ENSMUST00000154144 Adam12 protein_coding Interval_154877 chr8 24566176 24566512 + 0 NA intron (ENSMUSG00000031549.16, intron 1 of 9) protein_coding-intron (ENSMUSG00000031549.16, intron 1 of 9) -11747 ENSMUSG00000031549.16 ENSMUSG00000031549 ENSMUST00000138155 Ido2 protein_coding Interval_165390 chr9 47281868 47282107 + 0 NA intron (ENSMUSG00000109844.2, intron 3 of 5) lincRNA-intron (ENSMUSG00000109844.2, intron 3 of 5) -11244 ENSMUSG00000109844.2 ENSMUSG00000109844 ENSMUST00000209906 Gm31816 lincRNA Interval_135988 chr6 49263252 49264578 + 0 NA promoter-TSS (ENSMUSG00000029817.11) protein_coding-promoter-TSS (ENSMUSG00000029817.11) 118 ENSMUSG00000029817.11 ENSMUSG00000029817 ENSMUST00000204013 Tra2a protein_coding Interval_61069 chr15 79051308 79052624 + 0 NA promoter-TSS (ENSMUSG00000116287.1) lincRNA-promoter-TSS (ENSMUSG00000116287.1) -790 ENSMUSG00000116287.1 ENSMUSG00000116287 ENSMUST00000230803 Gm3924 lincRNA Interval_152655 chr7 135768276 135769226 + 0 NA promoter-TSS (ENSMUSG00000109831.1) lincRNA-promoter-TSS (ENSMUSG00000109831.1) 26075 ENSMUSG00000109831.1 ENSMUSG00000109831 ENSMUST00000209706 Gm36431 lincRNA Interval_126979 chr5 98918419 98919937 + 0 NA Intergenic Intergenic 24654 ENSMUSG00000029334.14 ENSMUSG00000029334 ENSMUST00000160765 Prkg2 protein_coding Interval_139913 chr6 112663143 112663385 + 0 NA intron (ENSMUSG00000030254.16, intron 8 of 9) protein_coding-intron (ENSMUSG00000030254.16, intron 10 of 13) 33369 ENSMUSG00000030254.16 ENSMUSG00000030254 ENSMUST00000135092 Rad18 protein_coding Interval_21309 chr10 127877771 127879930 + 0 NA Intergenic Intergenic 9480 ENSMUSG00000040134.8 ENSMUSG00000040134 ENSMUST00000130374 Rdh7 protein_coding Interval_5360 chr1 87875224 87875423 + 0 NA intron (ENSMUSG00000070738.10, intron 1 of 29) protein_coding-intron (ENSMUSG00000070738.10, intron 1 of 29) 10250 ENSMUSG00000103996.1 ENSMUSG00000103996 ENSMUST00000191704 4833421G17Rik TEC Interval_127925 chr5 109160328 109160974 + 0 NA intron (ENSMUSG00000091635.2, intron 4 of 5) protein_coding-intron (ENSMUSG00000091635.2, intron 4 of 5) 31548 ENSMUSG00000091635.2 ENSMUSG00000091635 ENSMUST00000053253 Vmn2r13 protein_coding Interval_116569 chr4 115771865 115772107 + 0 NA intron (ENSMUSG00000034210.14, intron 1 of 2) protein_coding-intron (ENSMUSG00000034210.14, intron 10 of 11) 5518 ENSMUSG00000034210.14 ENSMUSG00000034210 ENSMUST00000141927 Efcab14 protein_coding Interval_18581 chr10 88162744 88163440 + 0 NA intron (ENSMUSG00000035351.16, intron 5 of 9) protein_coding-intron (ENSMUSG00000035351.16, intron 5 of 9) 1981 ENSMUSG00000088843.1 ENSMUSG00000088843 ENSMUST00000158218 Gm26357 snRNA Interval_70266 chr17 7849870 7851377 + 0 NA Intergenic Intergenic -23321 ENSMUSG00000071984.11 ENSMUSG00000071984 ENSMUST00000167580 Fndc1 protein_coding Interval_30959 chr11 97434687 97436299 + 0 NA promoter-TSS (ENSMUSG00000049807.16) protein_coding-promoter-TSS (ENSMUSG00000049807.16) -792 ENSMUSG00000049807.16 ENSMUSG00000049807 ENSMUST00000093940 Arhgap23 protein_coding Interval_160026 chr8 105869992 105870897 + 0 NA intron (ENSMUSG00000008450.8, intron 2 of 4) protein_coding-intron (ENSMUSG00000008450.8, intron 1 of 4) 9799 ENSMUSG00000008450.8 ENSMUSG00000008450 ENSMUST00000212042 Nutf2 protein_coding Interval_159073 chr8 89551019 89552246 + 0 NA Intergenic Intergenic 37909 ENSMUSG00000064758.1 ENSMUSG00000064758 ENSMUST00000082824 Gm26331 snRNA Interval_41510 chr12 115593289 115593578 + 0 NA intron (ENSMUSG00000095519.2, intron 1 of 1) IG_V_gene-intron (ENSMUSG00000095519.2, intron 1 of 1) 158 ENSMUSG00000095519.2 ENSMUSG00000095519 ENSMUST00000103537 Ighv1-66 IG_V_gene Interval_46138 chr13 61966143 61966884 + 0 NA Intergenic Intergenic -40155 ENSMUSG00000113014.1 ENSMUSG00000113014 ENSMUST00000221926 Selenok-ps8 processed_pseudogene Interval_72623 chr17 31119207 31119850 + 0 NA Intergenic Intergenic 10118 ENSMUSG00000024029.4 ENSMUSG00000024029 ENSMUST00000024827 Tff3 protein_coding Interval_132385 chr5 144628447 144628898 + 0 NA Intergenic Intergenic 82770 ENSMUSG00000059991.7 ENSMUSG00000059991 ENSMUST00000071782 Nptx2 protein_coding Interval_23579 chr11 23514347 23515330 + 0 NA Intergenic Intergenic 4357 ENSMUSG00000020286.13 ENSMUSG00000020286 ENSMUST00000156629 1700093K21Rik protein_coding Interval_163406 chr9 21287579 21288363 + 0 NA promoter-TSS (ENSMUSG00000035047.9) protein_coding-promoter-TSS (ENSMUSG00000035047.9) -15 ENSMUSG00000035047.9 ENSMUSG00000035047 ENSMUST00000183665 Kri1 protein_coding Interval_130971 chr5 134336778 134337402 + 0 NA Intergenic Intergenic 10636 ENSMUSG00000093311.1 ENSMUSG00000093311 ENSMUST00000175570 Mir3965 miRNA Interval_57072 chr15 5579554 5579897 + 0 NA promoter-TSS (ENSMUSG00000110018.2) transcribed_processed_pseudogene-promoter-TSS (ENSMUSG00000110018.2) 83407 ENSMUSG00000110018.2 ENSMUSG00000110018 ENSMUST00000227355 5430437J10Rik transcribed_processed_pseudogene Interval_69501 chr16 93906127 93908420 + 0 NA Intergenic Intergenic 14532 ENSMUSG00000022945.12 ENSMUSG00000022945 ENSMUST00000128316 Chaf1b protein_coding Interval_85758 chr19 30499360 30499711 + 0 NA Intergenic Intergenic -8250 ENSMUSG00000118374.1 ENSMUSG00000118374 ENSMUST00000236809 Gm17885 processed_pseudogene Interval_87351 chr19 47882261 47883135 + 0 NA intron (ENSMUSG00000025069.15, intron 7 of 7) protein_coding-intron (ENSMUSG00000044948.17, intron 1 of 13) 16872 ENSMUSG00000025069.15 ENSMUSG00000025069 ENSMUST00000135016 Gsto2 protein_coding Interval_56112 chr14 105874711 105875952 + 0 NA Intergenic Intergenic -12830 ENSMUSG00000115796.1 ENSMUSG00000115796 ENSMUST00000226354 Gm48970 lincRNA Interval_15725 chr10 54780509 54780680 + 0 NA Intergenic Intergenic -67557 ENSMUSG00000088987.1 ENSMUSG00000088987 ENSMUST00000158362 Gm25602 snRNA Interval_142557 chr6 143245468 143245840 + 0 NA promoter-TSS (ENSMUSG00000072679.10) lincRNA-promoter-TSS (ENSMUSG00000072679.10) -239 ENSMUSG00000072679.10 ENSMUSG00000072679 ENSMUST00000160951 D6Ertd474e lincRNA Interval_134715 chr6 30666272 30666470 + 0 NA TTS (ENSMUSG00000029790.16) protein_coding-TTS (ENSMUSG00000029790.16) -7573 ENSMUSG00000086542.1 ENSMUSG00000086542 ENSMUST00000149515 Gm13782 antisense Interval_43600 chr13 34017488 34017723 + 0 NA intron (ENSMUSG00000021408.15, intron 2 of 2) protein_coding-intron (ENSMUSG00000021408.15, intron 6 of 10) 2361 ENSMUSG00000021408.15 ENSMUSG00000021408 ENSMUST00000222176 Ripk1 protein_coding Interval_57213 chr15 7834514 7834846 + 0 NA exon (ENSMUSG00000022144.4, exon 3 of 3) protein_coding-exon (ENSMUSG00000022144.4, exon 3 of 3) 23834 ENSMUSG00000022144.4 ENSMUSG00000022144 ENSMUST00000022744 Gdnf protein_coding Interval_32965 chr11 113399405 113400232 + 0 NA intron (ENSMUSG00000041654.15, intron 5 of 5) protein_coding-intron (ENSMUSG00000041654.15, intron 6 of 10) -68159 ENSMUSG00000078251.2 ENSMUSG00000078251 ENSMUST00000105048 Gm16487 pseudogene Interval_146950 chr7 56188407 56188719 + 0 NA exon (ENSMUSG00000030451.16, exon 65 of 93) protein_coding-exon (ENSMUSG00000030451.16, exon 65 of 93) 28690 ENSMUSG00000108347.1 ENSMUSG00000108347 ENSMUST00000206781 Gm19187 processed_pseudogene Interval_82753 chr18 76786127 76787027 + 0 NA Intergenic Intergenic -69828 ENSMUSG00000091519.1 ENSMUSG00000091519 ENSMUST00000166956 Skor2 protein_coding Interval_113066 chr4 47437337 47438436 + 0 NA Intergenic Intergenic -15746 ENSMUSG00000081152.1 ENSMUSG00000081152 ENSMUST00000121539 Gm12430 processed_pseudogene Interval_133372 chr6 4091936 4092930 + 0 NA Intergenic Intergenic -5503 ENSMUSG00000032757.6 ENSMUSG00000032757 ENSMUST00000205191 Bet1 protein_coding Interval_14667 chr10 38533692 38533969 + 0 NA Intergenic Intergenic 81651 ENSMUSG00000094521.1 ENSMUSG00000094521 ENSMUST00000177920 Gm22911 snRNA Interval_80039 chr18 36816668 36816854 + 0 NA Intergenic Intergenic 5870 ENSMUSG00000095604.1 ENSMUSG00000095604 ENSMUST00000103889 Gm23424 miRNA Interval_23656 chr11 24144320 24144961 + 0 NA intron (ENSMUSG00000000861.15, intron 1 of 2) protein_coding-intron (ENSMUSG00000000861.15, intron 2 of 4) 2261 ENSMUSG00000000861.15 ENSMUSG00000000861 ENSMUST00000127494 Bcl11a protein_coding Interval_24746 chr11 36563066 36563594 + 0 NA intron (ENSMUSG00000049336.16, intron 2 of 28) protein_coding-intron (ENSMUSG00000049336.16, intron 2 of 28) -159552 ENSMUSG00000065173.1 ENSMUSG00000065173 ENSMUST00000083239 Gm22127 snRNA Interval_102791 chr3 31056069 31057548 + 0 NA Intergenic Intergenic 17842 ENSMUSG00000098890.1 ENSMUSG00000098890 ENSMUST00000184398 Mir7008 miRNA Interval_95636 chr2 113273272 113273475 + 0 NA Intergenic Intergenic -12359 ENSMUSG00000041255.2 ENSMUSG00000041255 ENSMUST00000040856 Tmco5b protein_coding Interval_148883 chr7 89828966 89829892 + 0 NA TTS (ENSMUSG00000109150.1) TEC-TTS (ENSMUSG00000109150.1) 2211 ENSMUSG00000109150.1 ENSMUSG00000109150 ENSMUST00000207900 Gm45793 TEC Interval_104003 chr3 57051948 57052167 + 0 NA Intergenic Intergenic -2093 ENSMUSG00000077190.1 ENSMUSG00000077190 ENSMUST00000104002 Gm22269 snoRNA Interval_132331 chr5 144226354 144226926 + 0 NA Intergenic Intergenic 2915 ENSMUSG00000104662.1 ENSMUSG00000104662 ENSMUST00000199664 Gm43267 TEC Interval_166970 chr9 64231887 64232321 + 0 NA intron (ENSMUSG00000004936.8, intron 1 of 10) protein_coding-intron (ENSMUSG00000004936.8, intron 1 of 10) -3097 ENSMUSG00000035337.3 ENSMUSG00000035337 ENSMUST00000039011 Uchl4 protein_coding Interval_44291 chr13 43398071 43399096 + 0 NA promoter-TSS (ENSMUSG00000063200.4) protein_coding-promoter-TSS (ENSMUSG00000063200.4) -2464 ENSMUSG00000063200.4 ENSMUSG00000063200 ENSMUST00000222754 Nol7 protein_coding Interval_66461 chr16 34007096 34007350 + 0 NA exon (ENSMUSG00000116835.1, exon 1 of 1) processed_pseudogene-exon (ENSMUSG00000116835.1, exon 1 of 1) 234 ENSMUSG00000116835.1 ENSMUSG00000116835 ENSMUST00000231993 Gm49594 processed_pseudogene Interval_113402 chr4 54567541 54567877 + 0 NA Intergenic Intergenic 3086 ENSMUSG00000081428.1 ENSMUSG00000081428 ENSMUST00000120548 Tpt1-ps2 processed_pseudogene Interval_86561 chr19 41706716 41707181 + 0 NA intron (ENSMUSG00000025020.11, intron 3 of 11) protein_coding-intron (ENSMUSG00000025020.11, intron 4 of 36) 36538 ENSMUSG00000025020.11 ENSMUSG00000025020 ENSMUST00000171586 Slit1 protein_coding Interval_128314 chr5 112491295 112492008 + 0 NA intron (ENSMUSG00000058153.15, intron 1 of 14) protein_coding-intron (ENSMUSG00000058153.15, intron 1 of 16) 42225 ENSMUSG00000072722.2 ENSMUSG00000072722 ENSMUST00000100882 Gm6588 protein_coding Interval_102369 chr3 22297241 22299066 + 0 NA promoter-TSS (ENSMUSG00000102987.1) lincRNA-promoter-TSS (ENSMUSG00000102987.1) -323 ENSMUSG00000102987.1 ENSMUSG00000102987 ENSMUST00000194390 Gm38324 lincRNA Interval_145402 chr7 34505665 34508022 + 0 NA intron (ENSMUSG00000085124.1, intron 2 of 2) lincRNA-intron (ENSMUSG00000085124.1, intron 2 of 2) -10778 ENSMUSG00000081863.1 ENSMUSG00000081863 ENSMUST00000122458 Gm12780 processed_pseudogene Interval_68283 chr16 72356726 72357090 + 0 NA intron (ENSMUSG00000022883.11, intron 1 of 1) protein_coding-intron (ENSMUSG00000022883.11, intron 1 of 1) 15533 ENSMUSG00000116910.1 ENSMUSG00000116910 ENSMUST00000232381 Gm49670 processed_pseudogene Interval_137325 chr6 71353558 71353766 + 0 NA TTS (ENSMUSG00000108132.1) lincRNA-TTS (ENSMUSG00000108132.1) 627 ENSMUSG00000108289.1 ENSMUSG00000108289 ENSMUST00000205022 Gm44174 lincRNA Interval_64323 chr16 10501698 10502814 + 0 NA TTS (ENSMUSG00000038055.12) protein_coding-TTS (ENSMUSG00000038055.12) 12510 ENSMUSG00000022504.10 ENSMUSG00000022504 ENSMUST00000230392 Ciita protein_coding Interval_28670 chr11 77673176 77674418 + 0 NA Intergenic Intergenic -12375 ENSMUSG00000037857.16 ENSMUSG00000037857 ENSMUST00000155238 Nufip2 protein_coding Interval_135898 chr6 48539529 48540796 + 0 NA TTS (ENSMUSG00000039347.7) protein_coding-TTS (ENSMUSG00000039347.7) 2524 ENSMUSG00000039347.7 ENSMUSG00000039347 ENSMUST00000203011 Atp6v0e2 protein_coding Interval_79318 chr18 30438166 30438388 + 0 NA Intergenic Intergenic -8416 ENSMUSG00000117419.1 ENSMUSG00000117419 ENSMUST00000234371 Gm7930 unprocessed_pseudogene Interval_170596 chr9 109125954 109126187 + 0 NA Intergenic Intergenic 20569 ENSMUSG00000053646.13 ENSMUSG00000053646 ENSMUST00000194734 Plxnb1 protein_coding Interval_5432 chr1 88745304 88745743 + 0 NA Intergenic Intergenic -9367 ENSMUSG00000097398.2 ENSMUSG00000097398 ENSMUST00000180596 Platr5 lincRNA Interval_122810 chr5 25682137 25682435 + 0 NA Intergenic Intergenic 7109 ENSMUSG00000106241.1 ENSMUSG00000106241 ENSMUST00000196083 Gm43143 TEC Interval_116786 chr4 117295887 117296143 + 0 NA promoter-TSS (ENSMUSG00000085749.1) antisense-promoter-TSS (ENSMUSG00000085749.1) -129 ENSMUSG00000085749.1 ENSMUSG00000085749 ENSMUST00000139618 Gm12843 antisense Interval_17606 chr10 78129611 78130279 + 0 NA intron (ENSMUSG00000112662.1, intron 1 of 3) lincRNA-intron (ENSMUSG00000112662.1, intron 1 of 3) 8152 ENSMUSG00000112662.1 ENSMUSG00000112662 ENSMUST00000218616 Gm47922 lincRNA Interval_35214 chr12 18327048 18327560 + 0 NA Intergenic Intergenic -5569 ENSMUSG00000113592.1 ENSMUSG00000113592 ENSMUST00000223004 Gm7093 unprocessed_pseudogene Interval_151265 chr7 120458339 120459343 + 0 NA intron (ENSMUSG00000051900.12, intron 7 of 10) protein_coding-intron (ENSMUSG00000051900.12, intron 11 of 30) -16581 ENSMUSG00000051900.12 ENSMUSG00000051900 ENSMUST00000153845 Abca16 protein_coding Interval_89610 chr2 23210356 23210566 + 0 NA intron (ENSMUSG00000026774.11, intron 1 of 9) protein_coding-intron (ENSMUSG00000026774.11, intron 1 of 10) 2964 ENSMUSG00000026774.11 ENSMUSG00000026774 ENSMUST00000114505 Potegl protein_coding Interval_121080 chr4 152700272 152700698 + 0 NA TTS (ENSMUSG00000073699.3) lincRNA-TTS (ENSMUSG00000073699.3) 2945 ENSMUSG00000073699.3 ENSMUSG00000073699 ENSMUST00000143133 Gm833 lincRNA Interval_149401 chr7 98150173 98150801 + 0 NA intron (ENSMUSG00000035547.14, intron 2 of 2) protein_coding-intron (ENSMUSG00000035547.14, intron 3 of 12) -4985 ENSMUSG00000074006.3 ENSMUSG00000074006 ENSMUST00000098281 Omp protein_coding Interval_8491 chr1 140066442 140066627 + 0 NA Intergenic Intergenic -17505 ENSMUSG00000103691.1 ENSMUSG00000103691 ENSMUST00000195133 Gm38019 processed_pseudogene Interval_38785 chr12 82334754 82335629 + 0 NA intron (ENSMUSG00000042700.16, intron 2 of 21) protein_coding-intron (ENSMUSG00000042700.16, intron 1 of 20) 161346 ENSMUSG00000094374.2 ENSMUSG00000094374 ENSMUST00000179295 Gm5435 processed_pseudogene Interval_108655 chr3 129836173 129836425 + 0 NA promoter-TSS (ENSMUSG00000058952.12) protein_coding-promoter-TSS (ENSMUSG00000058952.12) 415 ENSMUSG00000058952.12 ENSMUSG00000058952 ENSMUST00000077918 Cfi protein_coding Interval_149779 chr7 101412518 101413633 + 0 NA TTS (ENSMUSG00000032812.18) protein_coding-TTS (ENSMUSG00000032812.18) 2189 ENSMUSG00000030653.17 ENSMUSG00000030653 ENSMUST00000084894 Gm45837 protein_coding Interval_115773 chr4 103804534 103805133 + 0 NA intron (ENSMUSG00000028519.16, intron 1 of 3) protein_coding-intron (ENSMUSG00000028519.16, intron 1 of 9) 134708 ENSMUSG00000080913.1 ENSMUSG00000080913 ENSMUST00000118859 Gm12719 processed_pseudogene Interval_169685 chr9 100377919 100378265 + 0 NA Intergenic Intergenic 13759 ENSMUSG00000111258.1 ENSMUSG00000111258 ENSMUST00000213192 Gm34397 lincRNA Interval_154363 chr8 14993889 14994282 + 0 NA intron (ENSMUSG00000071176.10, intron 17 of 18) protein_coding-intron (ENSMUSG00000071176.10, intron 27 of 28) -17221 ENSMUSG00000055675.6 ENSMUSG00000055675 ENSMUST00000184243 Kbtbd11 protein_coding Interval_24657 chr11 35699802 35700461 + 0 NA intron (ENSMUSG00000056427.10, intron 33 of 35) protein_coding-intron (ENSMUSG00000056427.10, intron 33 of 35) -69353 ENSMUSG00000018846.8 ENSMUSG00000018846 ENSMUST00000018990 Pank3 protein_coding Interval_92962 chr2 68992217 68992503 + 0 NA exon (ENSMUSG00000104262.1, exon 1 of 1) TEC-exon (ENSMUSG00000104262.1, exon 1 of 1) 2979 ENSMUSG00000104262.1 ENSMUSG00000104262 ENSMUST00000193717 Gm37747 TEC Interval_60553 chr15 74902199 74903123 + 0 NA Intergenic Intergenic -5640 ENSMUSG00000063522.5 ENSMUSG00000063522 ENSMUST00000077004 Ly6m protein_coding Interval_168656 chr9 85485248 85486292 + 0 NA Intergenic Intergenic 13036 ENSMUSG00000065274.1 ENSMUSG00000065274 ENSMUST00000083340 Gm25125 snoRNA Interval_131681 chr5 139270182 139271259 + 0 NA TTS (ENSMUSG00000025858.12) protein_coding-TTS (ENSMUSG00000025858.12) 17223 ENSMUSG00000025858.12 ENSMUSG00000025858 ENSMUST00000124420 Get4 protein_coding Interval_57681 chr15 15175327 15175728 + 0 NA Intergenic Intergenic 37340 ENSMUSG00000115208.1 ENSMUSG00000115208 ENSMUST00000226940 Gm49118 processed_pseudogene Interval_85990 chr19 34746327 34747610 + 0 NA intron (ENSMUSG00000009378.4, intron 1 of 6) protein_coding-intron (ENSMUSG00000009378.4, intron 1 of 6) -3542 ENSMUSG00000098742.1 ENSMUSG00000098742 ENSMUST00000183366 Gm27476 miRNA Interval_95804 chr2 116710535 116710964 + 0 NA Intergenic Intergenic 166419 ENSMUSG00000086462.1 ENSMUSG00000086462 ENSMUST00000151391 Gm13990 antisense Interval_156688 chr8 57320900 57322508 + 0 NA promoter-TSS (ENSMUSG00000100510.7) processed_transcript-promoter-TSS (ENSMUSG00000100510.7) 721 ENSMUSG00000038193.4 ENSMUSG00000038193 ENSMUST00000040104 Hand2 protein_coding Interval_146371 chr7 45567138 45568824 + 0 NA TTS (ENSMUSG00000030825.19) protein_coding-TTS (ENSMUSG00000030825.19) -4888 ENSMUSG00000030826.19 ENSMUSG00000030826 ENSMUST00000209410 Bcat2 protein_coding Interval_23723 chr11 25356608 25357476 + 0 NA intron (ENSMUSG00000033015.16, intron 3 of 7) lincRNA-intron (ENSMUSG00000033015.16, intron 2 of 4) 55779 ENSMUSG00000086439.1 ENSMUSG00000086439 ENSMUST00000145127 Gm12069 lincRNA Interval_42196 chr13 9763433 9765663 + 0 NA promoter-TSS (ENSMUSG00000021156.17) protein_coding-promoter-TSS (ENSMUSG00000021156.17) 325 ENSMUSG00000021156.17 ENSMUSG00000021156 ENSMUST00000222148 Zmynd11 protein_coding Interval_135683 chr6 43308977 43309893 + 0 NA intron (ENSMUSG00000029736.15, intron 1 of 8) protein_coding-intron (ENSMUSG00000029736.15, intron 1 of 8) -4300 ENSMUSG00000029736.15 ENSMUSG00000029736 ENSMUST00000172554 Nobox protein_coding Interval_160205 chr8 107116004 107116640 + 0 NA Intergenic Intergenic -2788 ENSMUSG00000102271.1 ENSMUSG00000102271 ENSMUST00000193420 C630050I24Rik TEC Interval_118887 chr4 134267938 134269076 + 0 NA Intergenic Intergenic -15484 ENSMUSG00000050105.5 ENSMUSG00000050105 ENSMUST00000138366 Grrp1 protein_coding Interval_140581 chr6 119812954 119813255 + 0 NA intron (ENSMUSG00000030172.15, intron 2 of 19) protein_coding-intron (ENSMUSG00000030172.15, intron 1 of 18) -79816 ENSMUSG00000080719.1 ENSMUSG00000080719 ENSMUST00000121192 Gm15532 processed_pseudogene Interval_96215 chr2 120558742 120559449 + 0 NA intron (ENSMUSG00000027288.16, intron 1 of 3) protein_coding-intron (ENSMUSG00000027288.16, intron 1 of 21) -8628 ENSMUSG00000027287.14 ENSMUSG00000027287 ENSMUST00000130759 Snap23 protein_coding Interval_147 GL456389.1 24684 24985 + 0 NA NA NA NA NA Interval_57043 chr15 5099008 5099604 + 0 NA exon (ENSMUSG00000041849.7, exon 4 of 4) protein_coding-exon (ENSMUSG00000041849.7, exon 4 of 4) 6759 ENSMUSG00000080720.2 ENSMUSG00000080720 ENSMUST00000121915 Gm16077 processed_pseudogene Interval_134952 chr6 34076876 34077098 + 0 NA intron (ENSMUSG00000056215.13, intron 10 of 15) protein_coding-intron (ENSMUSG00000056215.13, intron 10 of 19) 47539 ENSMUSG00000056215.13 ENSMUSG00000056215 ENSMUST00000141078 Lrguk protein_coding Interval_48047 chr13 95554025 95554938 + 0 NA Intergenic Intergenic 18891 ENSMUSG00000113359.1 ENSMUSG00000113359 ENSMUST00000220746 Gm48730 lincRNA Interval_74961 chr17 58332316 58332546 + 0 NA intron (ENSMUSG00000038048.8, intron 19 of 23) protein_coding-intron (ENSMUSG00000038048.8, intron 19 of 23) -129894 ENSMUSG00000117281.1 ENSMUSG00000117281 ENSMUST00000233462 Gm49848 processed_pseudogene Interval_26118 chr11 54462809 54463318 + 0 NA intron (ENSMUSG00000035992.15, intron 1 of 17) protein_coding-intron (ENSMUSG00000035992.15, intron 1 of 17) -1497 ENSMUSG00000035992.15 ENSMUSG00000035992 ENSMUST00000143650 Fnip1 protein_coding Interval_39923 chr12 99786610 99786835 + 0 NA intron (ENSMUSG00000021176.6, intron 6 of 6) protein_coding-intron (ENSMUSG00000021176.6, intron 5 of 5) 18926 ENSMUSG00000113577.1 ENSMUSG00000113577 ENSMUST00000221936 Gm19238 processed_pseudogene Interval_43970 chr13 38541963 38542317 + 0 NA Intergenic Intergenic -5460 ENSMUSG00000114331.1 ENSMUSG00000114331 ENSMUST00000225265 Gm48056 lincRNA Interval_101209 chr2 179520963 179523066 + 0 NA intron (ENSMUSG00000000305.12, intron 2 of 2) protein_coding-intron (ENSMUSG00000000305.12, intron 2 of 15) 91553 ENSMUSG00000083410.1 ENSMUSG00000083410 ENSMUST00000120800 Gm14300 processed_pseudogene Interval_125335 chr5 66259591 66260475 + 0 NA promoter-TSS (ENSMUSG00000029206.13) protein_coding-promoter-TSS (ENSMUSG00000029206.13) 136 ENSMUSG00000029206.13 ENSMUSG00000029206 ENSMUST00000031109 Nsun7 protein_coding Interval_137722 chr6 81752147 81752486 + 0 NA Intergenic Intergenic -37084 ENSMUSG00000107419.1 ENSMUSG00000107419 ENSMUST00000203833 Gm38839 lincRNA Interval_99168 chr2 157705933 157706169 + 0 NA Intergenic Intergenic 7750 ENSMUSG00000077290.1 ENSMUSG00000077290 ENSMUST00000104102 Gm25407 snoRNA Interval_141588 chr6 129811622 129811848 + 0 NA intron (ENSMUSG00000082069.2, intron 2 of 3) unprocessed_pseudogene-intron (ENSMUSG00000082069.2, intron 2 of 3) 2201 ENSMUSG00000082069.2 ENSMUSG00000082069 ENSMUST00000117741 Gm16242 unprocessed_pseudogene Interval_143575 chr7 12926870 12928925 + 0 NA exon (ENSMUSG00000033967.4, exon 2 of 2) protein_coding-exon (ENSMUSG00000033967.4, exon 2 of 2) 481 ENSMUSG00000033967.4 ENSMUSG00000033967 ENSMUST00000045870 Rnf225 protein_coding Interval_10231 chr1 167349271 167350711 + 0 NA promoter-TSS (ENSMUSG00000026687.14) protein_coding-promoter-TSS (ENSMUSG00000026687.14) -245 ENSMUSG00000026687.14 ENSMUSG00000026687 ENSMUST00000191715 Aldh9a1 protein_coding Interval_27579 chr11 68826992 68827374 + 0 NA intron (ENSMUSG00000018736.14, intron 4 of 5) protein_coding-intron (ENSMUSG00000018736.14, intron 8 of 8) 32813 ENSMUSG00000018736.14 ENSMUSG00000018736 ENSMUST00000127469 Ndel1 protein_coding Interval_78117 chr18 8466624 8466964 + 0 NA Intergenic Intergenic 51665 ENSMUSG00000117484.1 ENSMUSG00000117484 ENSMUST00000234117 Gm5500 processed_pseudogene Interval_111845 chr4 31873512 31874346 + 0 NA Intergenic Intergenic -111738 ENSMUSG00000028284.13 ENSMUSG00000028284 ENSMUST00000131310 Map3k7 protein_coding Interval_11371 chr1 181284462 181284848 + 0 NA TTS (ENSMUSG00000103260.1) processed_pseudogene-TTS (ENSMUSG00000103260.1) 2609 ENSMUSG00000103260.1 ENSMUSG00000103260 ENSMUST00000192106 Gm8146 processed_pseudogene Interval_50916 chr14 20746742 20747705 + 0 NA intron (ENSMUSG00000021820.18, intron 12 of 14) protein_coding-intron (ENSMUSG00000021820.18, intron 14 of 20) -16905 ENSMUSG00000039308.6 ENSMUSG00000039308 ENSMUST00000225320 Ndst2 protein_coding Interval_29366 chr11 83457227 83457748 + 0 NA intron (ENSMUSG00000020682.17, intron 1 of 2) protein_coding-intron (ENSMUSG00000020682.17, intron 1 of 7) 5584 ENSMUSG00000020682.17 ENSMUSG00000020682 ENSMUST00000138780 Mmp28 protein_coding Interval_84470 chr19 11440156 11440969 + 0 NA Intergenic Intergenic 2531 ENSMUSG00000100615.1 ENSMUSG00000100615 ENSMUST00000189380 Gm5511 processed_pseudogene Interval_50884 chr14 20451547 20453552 + 0 NA promoter-TSS (ENSMUSG00000039543.16) protein_coding-promoter-TSS (ENSMUSG00000039543.16) 6620 ENSMUSG00000021814.17 ENSMUSG00000021814 ENSMUST00000225132 Anxa7 protein_coding Interval_106695 chr3 99132992 99133296 + 0 NA Intergenic Intergenic -7952 ENSMUSG00000004233.14 ENSMUSG00000004233 ENSMUST00000126875 Wars2 protein_coding Interval_21277 chr10 127615575 127616457 + 0 NA intron (ENSMUSG00000040249.15, intron 1 of 14) protein_coding-intron (ENSMUSG00000040249.15, intron 1 of 88) 19468 ENSMUSG00000086499.1 ENSMUSG00000086499 ENSMUST00000124182 Gm16217 antisense Interval_160016 chr8 105788158 105788717 + 0 NA intron (ENSMUSG00000037415.7, intron 3 of 13) protein_coding-intron (ENSMUSG00000037415.7, intron 3 of 13) -29807 ENSMUSG00000013150.15 ENSMUSG00000013150 ENSMUST00000135959 Gfod2 protein_coding Interval_99514 chr2 162889150 162890036 + 0 NA Intergenic Intergenic 9930 ENSMUSG00000083567.3 ENSMUSG00000083567 ENSMUST00000118946 Gm11451 processed_pseudogene Interval_8480 chr1 139928662 139929228 + 0 NA exon (ENSMUSG00000104496.1, exon 1 of 1) processed_pseudogene-exon (ENSMUSG00000104496.1, exon 1 of 1) 663 ENSMUSG00000104496.1 ENSMUSG00000104496 ENSMUST00000191844 Gm5837 processed_pseudogene Interval_58046 chr15 27405716 27406112 + 0 NA Intergenic Intergenic 37975 ENSMUSG00000115554.1 ENSMUSG00000115554 ENSMUST00000227785 Gm19111 processed_pseudogene Interval_49039 chr13 107168358 107169138 + 0 NA Intergenic Intergenic 105055 ENSMUSG00000114311.1 ENSMUSG00000114311 ENSMUST00000224729 Gm31452 lincRNA Interval_114297 chr4 71421751 71423048 + 0 NA Intergenic Intergenic -51203 ENSMUSG00000083914.3 ENSMUSG00000083914 ENSMUST00000120838 Rps18-ps1 processed_pseudogene Interval_126968 chr5 98569113 98569430 + 0 NA intron (ENSMUSG00000057816.7, intron 3 of 5) protein_coding-intron (ENSMUSG00000057816.7, intron 3 of 5) -2345 ENSMUSG00000067101.5 ENSMUSG00000067101 ENSMUST00000086912 1700010H22Rik lincRNA Interval_156508 chr8 48816756 48817624 + 0 NA intron (ENSMUSG00000031561.16, intron 1 of 2) protein_coding-intron (ENSMUSG00000031561.16, intron 1 of 2) -26532 ENSMUSG00000100706.6 ENSMUSG00000100706 ENSMUST00000188936 Gm19744 processed_transcript Interval_37347 chr12 65334175 65334428 + 0 NA Intergenic Intergenic 71669 ENSMUSG00000077590.1 ENSMUSG00000077590 ENSMUST00000104402 Gm26015 snoRNA Interval_156625 chr8 55461831 55462447 + 0 NA Intergenic Intergenic -70152 ENSMUSG00000110025.1 ENSMUSG00000110025 ENSMUST00000210122 Gm20586 processed_pseudogene Interval_170385 chr9 107599100 107600432 + 0 NA TTS (ENSMUSG00000057969.15) protein_coding-TTS (ENSMUSG00000057969.15) -2691 ENSMUSG00000103409.2 ENSMUSG00000103409 ENSMUST00000238519 Lsmem2 protein_coding Interval_129431 chr5 120136227 120136590 + 0 NA intron (ENSMUSG00000097368.2, intron 1 of 1) protein_coding-intron (ENSMUSG00000029594.12, intron 16 of 23) 2855 ENSMUSG00000097368.2 ENSMUSG00000097368 ENSMUST00000181905 Gm10390 antisense Interval_158538 chr8 84334492 84334963 + 0 NA Intergenic Intergenic -3912 ENSMUSG00000034656.18 ENSMUSG00000034656 ENSMUST00000130507 Cacna1a protein_coding Interval_109885 chr3 149408094 149408548 + 0 NA intron (ENSMUSG00000106515.4, intron 1 of 3) lincRNA-intron (ENSMUSG00000106515.4, intron 1 of 3) 36980 ENSMUSG00000106515.4 ENSMUSG00000106515 ENSMUST00000199503 Gm30382 lincRNA Interval_108616 chr3 129586298 129586676 + 0 NA intron (ENSMUSG00000041220.10, intron 1 of 2) protein_coding-intron (ENSMUSG00000041220.10, intron 2 of 4) 48346 ENSMUSG00000106092.1 ENSMUSG00000106092 ENSMUST00000200283 Gm43072 TEC Interval_114100 chr4 63441470 63442070 + 0 NA intron (ENSMUSG00000039137.18, intron 2 of 2) protein_coding-intron (ENSMUSG00000039137.18, intron 3 of 11) -8448 ENSMUSG00000039137.18 ENSMUSG00000039137 ENSMUST00000140720 Whrn protein_coding Interval_82381 chr18 73541734 73542061 + 0 NA Intergenic Intergenic -8347 ENSMUSG00000065922.1 ENSMUSG00000065922 ENSMUST00000083988 n-R5-8s1 rRNA Interval_51676 chr14 31290152 31290341 + 0 NA intron (ENSMUSG00000019027.8, intron 36 of 77) protein_coding-intron (ENSMUSG00000019027.8, intron 36 of 77) -20735 ENSMUSG00000019027.8 ENSMUSG00000019027 ENSMUST00000228429 Dnah1 protein_coding Interval_31332 chr11 100025250 100025467 + 0 NA exon (ENSMUSG00000057723.3, exon 5 of 7) protein_coding-exon (ENSMUSG00000057723.3, exon 5 of 7) 4510 ENSMUSG00000057723.3 ENSMUSG00000057723 ENSMUST00000073890 Krt33b protein_coding Interval_126277 chr5 85962509 85963319 + 0 NA Intergenic Intergenic 42703 ENSMUSG00000106225.1 ENSMUSG00000106225 ENSMUST00000196185 Gm43564 processed_pseudogene Interval_21162 chr10 126990133 126990768 + 0 NA intron (ENSMUSG00000078429.9, intron 1 of 7) protein_coding-intron (ENSMUSG00000078429.9, intron 1 of 7) -5080 ENSMUSG00000065430.1 ENSMUSG00000065430 ENSMUST00000083496 Mir26a-2 miRNA Interval_118673 chr4 133121009 133122996 + 0 NA Intergenic Intergenic -8538 ENSMUSG00000028868.13 ENSMUSG00000028868 ENSMUST00000136637 Wasf2 protein_coding Interval_60102 chr15 65625451 65625671 + 0 NA Intergenic Intergenic 62587 ENSMUSG00000115402.1 ENSMUSG00000115402 ENSMUST00000227091 Gm49243 processed_pseudogene Interval_86620 chr19 42090118 42091004 + 0 NA promoter-TSS (ENSMUSG00000025178.9) protein_coding-promoter-TSS (ENSMUSG00000025178.9) -11428 ENSMUSG00000049670.9 ENSMUSG00000049670 ENSMUST00000051772 Morn4 protein_coding Interval_80769 chr18 46945050 46946156 + 0 NA Intergenic Intergenic -3427 ENSMUSG00000117411.1 ENSMUSG00000117411 ENSMUST00000234725 Gm3744 processed_pseudogene Interval_131869 chr5 140492321 140493426 + 0 NA intron (ENSMUSG00000106350.2, intron 18 of 19) protein_coding-intron (ENSMUSG00000106350.2, intron 18 of 19) -12702 ENSMUSG00000036599.10 ENSMUSG00000036599 ENSMUST00000124142 Chst12 protein_coding Interval_59189 chr15 47213936 47215279 + 0 NA Intergenic Intergenic -207308 ENSMUSG00000115534.1 ENSMUSG00000115534 ENSMUST00000227510 Gm7508 processed_pseudogene Interval_79497 chr18 32391323 32391702 + 0 NA intron (ENSMUSG00000024381.16, intron 1 of 13) protein_coding-intron (ENSMUSG00000024381.16, intron 1 of 18) -13234 ENSMUSG00000097413.2 ENSMUSG00000097413 ENSMUST00000234408 A830052D11Rik lincRNA Interval_162121 chr8 125335064 125335950 + 0 NA Intergenic Intergenic -108184 ENSMUSG00000086694.1 ENSMUSG00000086694 ENSMUST00000156666 Gm16237 antisense Interval_112337 chr4 40648982 40649482 + 0 NA Intergenic Intergenic -29100 ENSMUSG00000081720.1 ENSMUSG00000081720 ENSMUST00000117626 Gm12391 processed_pseudogene Interval_77281 chr17 87745586 87747034 + 0 NA exon (ENSMUSG00000050138.8, exon 2 of 2) protein_coding-exon (ENSMUSG00000050138.8, exon 2 of 2) 49769 ENSMUSG00000024151.13 ENSMUSG00000024151 ENSMUST00000174703 Msh2 protein_coding Interval_18643 chr10 88768595 88768864 + 0 NA exon (ENSMUSG00000004356.8, exon 41 of 62) protein_coding-exon (ENSMUSG00000004356.8, exon 41 of 62) -37628 ENSMUSG00000069540.4 ENSMUSG00000069540 ENSMUST00000092231 Gm4925 transcribed_processed_pseudogene Interval_71044 chr17 17394050 17394772 + 0 NA exon (ENSMUSG00000116564.1, exon 10 of 10) protein_coding-exon (ENSMUSG00000116564.1, exon 10 of 10) 17582 ENSMUSG00000097379.2 ENSMUSG00000097379 ENSMUST00000181390 Gm26873 antisense Interval_138589 chr6 89659189 89660413 + 0 NA intron (ENSMUSG00000000811.13, intron 6 of 13) protein_coding-intron (ENSMUSG00000000811.13, intron 6 of 15) 15813 ENSMUSG00000000811.13 ENSMUSG00000000811 ENSMUST00000101171 Txnrd3 protein_coding Interval_24512 chr11 33908676 33909158 + 0 NA intron (ENSMUSG00000053519.17, intron 1 of 7) protein_coding-intron (ENSMUSG00000053519.17, intron 1 of 3) -54096 ENSMUSG00000020155.2 ENSMUSG00000020155 ENSMUST00000020362 Kcnmb1 protein_coding Interval_71947 chr17 27151135 27151819 + 0 NA intron (ENSMUSG00000024210.3, intron 2 of 5) protein_coding-intron (ENSMUSG00000024210.3, intron 2 of 5) 11928 ENSMUSG00000118010.1 ENSMUSG00000118010 ENSMUST00000235247 Gm50316 lincRNA Interval_71370 chr17 22745351 22746629 + 0 NA intron (ENSMUSG00000098164.2, intron 2 of 4) lincRNA-intron (ENSMUSG00000098164.2, intron 2 of 4) 6045 ENSMUSG00000098164.2 ENSMUSG00000098164 ENSMUST00000182063 Gm5493 lincRNA Interval_167255 chr9 66712378 66714724 + 0 NA promoter-TSS (ENSMUSG00000032373.15) protein_coding-promoter-TSS (ENSMUSG00000032373.15) -178 ENSMUSG00000032373.15 ENSMUSG00000032373 ENSMUST00000134829 Car12 protein_coding Interval_142420 chr6 141852655 141852872 + 0 NA exon (ENSMUSG00000030237.14, exon 1 of 1) protein_coding-intron (ENSMUSG00000030237.14, intron 2 of 16) 919 ENSMUSG00000030237.14 ENSMUSG00000030237 ENSMUST00000204676 Slco1a4 protein_coding Interval_100935 chr2 173463103 173463667 + 0 NA Intergenic Intergenic -59201 ENSMUSG00000027518.3 ENSMUSG00000027518 ENSMUST00000029023 1700021F07Rik protein_coding Interval_123257 chr5 30929740 30931072 + 0 NA promoter-TSS (ENSMUSG00000029162.15) protein_coding-promoter-TSS (ENSMUSG00000029162.15) 8548 ENSMUSG00000029162.15 ENSMUSG00000029162 ENSMUST00000200978 Khk protein_coding Interval_106858 chr3 101347466 101348060 + 0 NA Intergenic Intergenic -29320 ENSMUSG00000042035.11 ENSMUSG00000042035 ENSMUST00000195164 Igsf3 protein_coding Interval_127305 chr5 102399873 102400046 + 0 NA Intergenic Intergenic -16244 ENSMUSG00000106295.1 ENSMUSG00000106295 ENSMUST00000197280 Gm42932 processed_pseudogene Interval_65662 chr16 24961117 24961952 + 0 NA intron (ENSMUSG00000033306.15, intron 5 of 7) protein_coding-intron (ENSMUSG00000033306.15, intron 10 of 12) 77361 ENSMUSG00000077602.1 ENSMUSG00000077602 ENSMUST00000104414 Gm22672 snoRNA Interval_60554 chr15 74909054 74909944 + 0 NA Intergenic Intergenic -12478 ENSMUSG00000063522.5 ENSMUSG00000063522 ENSMUST00000077004 Ly6m protein_coding Interval_102043 chr3 16071903 16072473 + 0 NA Intergenic Intergenic 6136 ENSMUSG00000103535.1 ENSMUSG00000103535 ENSMUST00000195875 Gm37836 processed_pseudogene Interval_40032 chr12 100613826 100614246 + 0 NA intron (ENSMUSG00000021180.9, intron 5 of 16) protein_coding-intron (ENSMUSG00000021180.9, intron 5 of 17) 9697 ENSMUSG00000113195.1 ENSMUSG00000113195 ENSMUST00000222512 Gm48586 TEC Interval_141707 chr6 133904680 133904867 + 0 NA Intergenic Intergenic 27636 ENSMUSG00000107771.1 ENSMUSG00000107771 ENSMUST00000203939 Gm8956 processed_pseudogene Interval_48714 chr13 101813332 101813826 + 0 NA Intergenic Intergenic 28727 ENSMUSG00000114223.1 ENSMUSG00000114223 ENSMUST00000225177 Gm19108 processed_pseudogene Interval_43801 chr13 36612982 36613275 + 0 NA exon (ENSMUSG00000114851.1, exon 1 of 2) sense_intronic-exon (ENSMUSG00000114851.1, exon 1 of 2) 156 ENSMUSG00000114851.1 ENSMUSG00000114851 ENSMUST00000226032 Gm46409 sense_intronic Interval_162693 chr9 7855312 7855664 + 0 NA TTS (ENSMUSG00000032000.17) protein_coding-TTS (ENSMUSG00000032000.17) 4838 ENSMUSG00000032000.17 ENSMUSG00000032000 ENSMUST00000159672 Birc3 protein_coding Interval_148590 chr7 82880090 82880366 + 0 NA Intergenic Intergenic 12895 ENSMUSG00000057706.7 ENSMUSG00000057706 ENSMUST00000082237 Mex3b protein_coding Interval_73448 chr17 37332041 37332624 + 0 NA Intergenic Intergenic 7366 ENSMUSG00000049618.6 ENSMUSG00000049618 ENSMUST00000058826 Olfr103 protein_coding Interval_149694 chr7 100698525 100698764 + 0 NA Intergenic Intergenic 23556 ENSMUSG00000108866.1 ENSMUSG00000108866 ENSMUST00000208164 Gm35082 lincRNA Interval_54459 chr14 69911533 69912070 + 0 NA intron (ENSMUSG00000022085.4, intron 3 of 6) protein_coding-intron (ENSMUSG00000022085.4, intron 3 of 6) 71381 ENSMUSG00000022085.4 ENSMUSG00000022085 ENSMUST00000022678 Pebp4 protein_coding Interval_91077 chr2 34843036 34843776 + 0 NA Intergenic Intergenic 10399 ENSMUSG00000107167.3 ENSMUSG00000107167 ENSMUST00000201786 Gm34653 protein_coding Interval_118389 chr4 131060270 131060704 + 0 NA Intergenic Intergenic -50013 ENSMUSG00000086262.7 ENSMUSG00000086262 ENSMUST00000153810 A930031H19Rik lincRNA Interval_127490 chr5 104446295 104446582 + 0 NA Intergenic Intergenic 11296 ENSMUSG00000029304.14 ENSMUSG00000029304 ENSMUST00000112747 Spp1 protein_coding Interval_115209 chr4 94461218 94461577 + 0 NA TTS (ENSMUSG00000087128.7) processed_transcript-TTS (ENSMUSG00000087128.7) 15783 ENSMUSG00000087128.7 ENSMUSG00000087128 ENSMUST00000127678 Gm12655 processed_transcript Interval_10661 chr1 172519773 172521520 + 0 NA promoter-TSS (ENSMUSG00000026546.16) protein_coding-promoter-TSS (ENSMUSG00000026546.16) -155 ENSMUSG00000026546.16 ENSMUSG00000026546 ENSMUST00000160303 Cfap45 protein_coding Interval_32449 chr11 107597807 107598151 + 0 NA intron (ENSMUSG00000020721.16, intron 7 of 32) protein_coding-intron (ENSMUSG00000020721.16, intron 6 of 31) -39743 ENSMUSG00000098497.1 ENSMUSG00000098497 ENSMUST00000185044 Mir6932 miRNA Interval_84256 chr19 9047193 9047993 + 0 NA intron (ENSMUSG00000069833.13, intron 5 of 5) protein_coding-intron (ENSMUSG00000069833.13, intron 5 of 5) 40365 ENSMUSG00000024653.2 ENSMUSG00000024653 ENSMUST00000025554 Scgb1a1 protein_coding Interval_22396 chr11 9536867 9537093 + 0 NA intron (ENSMUSG00000004668.14, intron 47 of 61) protein_coding-intron (ENSMUSG00000004668.14, intron 47 of 61) 168643 ENSMUSG00000104137.1 ENSMUSG00000104137 ENSMUST00000195362 Gm36954 TEC Interval_156717 chr8 57571307 57572129 + 0 NA intron (ENSMUSG00000031608.13, intron 2 of 5) protein_coding-intron (ENSMUSG00000031608.13, intron 2 of 11) 21419 ENSMUSG00000070025.8 ENSMUSG00000070025 ENSMUST00000145057 Gm10284 processed_pseudogene Interval_138454 chr6 88326021 88326431 + 0 NA intron (ENSMUSG00000033216.9, intron 4 of 7) protein_coding-intron (ENSMUSG00000033216.9, intron 4 of 6) 27380 ENSMUSG00000107472.1 ENSMUSG00000107472 ENSMUST00000203631 Gm44265 sense_intronic Interval_20344 chr10 117017313 117018755 + 0 NA intron (ENSMUSG00000020169.4, intron 9 of 9) protein_coding-intron (ENSMUSG00000020169.4, intron 9 of 9) -25712 ENSMUSG00000112242.1 ENSMUSG00000112242 ENSMUST00000217799 Gm10747 lincRNA Interval_135137 chr6 36633398 36633771 + 0 NA Intergenic Intergenic 6682 ENSMUSG00000106872.1 ENSMUSG00000106872 ENSMUST00000201419 Gm2189 processed_pseudogene Interval_165108 chr9 44610206 44611363 + 0 NA promoter-TSS (ENSMUSG00000111301.1) processed_pseudogene-promoter-TSS (ENSMUSG00000111301.1) -62 ENSMUSG00000111301.1 ENSMUSG00000111301 ENSMUST00000214898 Gm30671 processed_pseudogene Interval_103551 chr3 48991966 48992291 + 0 NA Intergenic Intergenic 37406 ENSMUSG00000065018.1 ENSMUSG00000065018 ENSMUST00000083084 Gm23511 snRNA Interval_33527 chr11 117047339 117048260 + 0 NA Intergenic Intergenic -7611 ENSMUSG00000086902.7 ENSMUSG00000086902 ENSMUST00000152401 Gm11728 lincRNA Interval_154378 chr8 15121532 15121942 + 0 NA intron (ENSMUSG00000031461.4, intron 2 of 9) protein_coding-intron (ENSMUSG00000031461.4, intron 28 of 36) 2730 ENSMUSG00000031461.4 ENSMUSG00000031461 ENSMUST00000140033 Myom2 protein_coding Interval_166006 chr9 55382375 55383266 + 0 NA intron (ENSMUSG00000032313.11, intron 3 of 10) protein_coding-intron (ENSMUSG00000032313.11, intron 3 of 10) 49619 ENSMUSG00000032313.11 ENSMUSG00000032313 ENSMUST00000130465 Tmem266 protein_coding Interval_120861 chr4 151107316 151109136 + 0 NA promoter-TSS (ENSMUSG00000014592.21) protein_coding-promoter-TSS (ENSMUSG00000014592.21) 18656 ENSMUSG00000078491.2 ENSMUSG00000078491 ENSMUST00000105667 Gm13090 protein_coding Interval_118623 chr4 132831928 132832815 + 0 NA intron (ENSMUSG00000028882.13, intron 1 of 2) protein_coding-intron (ENSMUSG00000028882.13, intron 4 of 6) 604 ENSMUSG00000028882.13 ENSMUSG00000028882 ENSMUST00000148228 Ppp1r8 protein_coding Interval_171446 chr9 118399553 118399791 + 0 NA Intergenic Intergenic 3630 ENSMUSG00000103968.1 ENSMUSG00000103968 ENSMUST00000193035 2610509F24Rik TEC Interval_26820 chr11 60841442 60843094 + 0 NA intron (ENSMUSG00000042569.13, intron 1 of 6) protein_coding-intron (ENSMUSG00000042569.13, intron 1 of 6) 11589 ENSMUSG00000042569.13 ENSMUSG00000042569 ENSMUST00000108718 Dhrs7b protein_coding Interval_40519 chr12 105455323 105455533 + 0 NA intron (ENSMUSG00000094910.1, intron 1 of 1) protein_coding-intron (ENSMUSG00000094910.1, intron 1 of 1) 1572 ENSMUSG00000094910.1 ENSMUSG00000094910 ENSMUST00000178224 D430019H16Rik protein_coding Interval_167344 chr9 67613557 67613778 + 0 NA Intergenic Intergenic -86514 ENSMUSG00000111819.1 ENSMUSG00000111819 ENSMUST00000216655 Gm47110 processed_pseudogene Interval_82715 chr18 76150648 76151312 + 0 NA Intergenic Intergenic -19572 ENSMUSG00000098276.1 ENSMUSG00000098276 ENSMUST00000184549 Mir6358 miRNA Interval_133648 chr6 8023495 8024239 + 0 NA intron (ENSMUSG00000068794.7, intron 27 of 34) protein_coding-intron (ENSMUSG00000068794.7, intron 27 of 34) -40484 ENSMUSG00000096403.2 ENSMUSG00000096403 ENSMUST00000178598 Rnps1-ps processed_pseudogene Interval_120878 chr4 151228770 151229416 + 0 NA intron (ENSMUSG00000014592.21, intron 6 of 24) protein_coding-intron (ENSMUSG00000014592.21, intron 6 of 23) 139523 ENSMUSG00000078491.2 ENSMUSG00000078491 ENSMUST00000105667 Gm13090 protein_coding Interval_69797 chr16 96469513 96469836 + 0 NA intron (ENSMUSG00000090223.2, intron 1 of 2) protein_coding-intron (ENSMUSG00000090223.2, intron 1 of 2) -24142 ENSMUSG00000090223.2 ENSMUSG00000090223 ENSMUST00000233216 Pcp4 protein_coding Interval_829 chr1 12126071 12127331 + 0 NA Intergenic Intergenic 5741 ENSMUSG00000101610.1 ENSMUSG00000101610 ENSMUST00000187748 Gm7560 processed_pseudogene Interval_64441 chr16 11396760 11397003 + 0 NA intron (ENSMUSG00000071669.14, intron 5 of 20) protein_coding-intron (ENSMUSG00000071669.14, intron 5 of 7) 73973 ENSMUSG00000071669.14 ENSMUSG00000071669 ENSMUST00000134941 Snx29 protein_coding Interval_173974 chrX 120289972 120291200 + 0 NA exon (ENSMUSG00000034755.18, exon 1 of 11) protein_coding-exon (ENSMUSG00000034755.18, exon 1 of 11) 183 ENSMUSG00000034755.18 ENSMUSG00000034755 ENSMUST00000191653 Pcdh11x protein_coding Interval_78184 chr18 9950383 9950708 + 0 NA Intergenic Intergenic 33618 ENSMUSG00000092039.2 ENSMUSG00000092039 ENSMUST00000165917 Gm5501 processed_pseudogene Interval_79028 chr18 24044838 24046328 + 0 NA Intergenic Intergenic -25263 ENSMUSG00000051469.14 ENSMUSG00000051469 ENSMUST00000148525 Zfp24 protein_coding Interval_125927 chr5 75861808 75863360 + 0 NA Intergenic Intergenic -9626 ENSMUSG00000100936.1 ENSMUSG00000100936 ENSMUST00000187685 Gm28865 lincRNA Interval_137245 chr6 70713228 70713442 + 0 NA Intergenic Intergenic -5739 ENSMUSG00000105646.1 ENSMUSG00000105646 ENSMUST00000197227 Gm30211 lincRNA Interval_138662 chr6 90932618 90933128 + 0 NA intron (ENSMUSG00000034312.15, intron 1 of 15) protein_coding-intron (ENSMUSG00000034312.15, intron 1 of 15) 27054 ENSMUSG00000099662.1 ENSMUSG00000099662 ENSMUST00000117103 Ppp1r2-ps2 processed_pseudogene Interval_110301 chr3 156253466 156253711 + 0 NA Intergenic Intergenic -10998 ENSMUSG00000104573.1 ENSMUSG00000104573 ENSMUST00000199214 Gm42886 processed_pseudogene Interval_93360 chr2 72402244 72403134 + 0 NA exon (ENSMUSG00000004085.14, exon 12 of 12) protein_coding-exon (ENSMUSG00000004085.14, exon 12 of 12) 42442 ENSMUSG00000084261.1 ENSMUSG00000084261 ENSMUST00000121019 Rpl36a-ps4 processed_pseudogene Interval_84944 chr19 19478236 19478416 + 0 NA Intergenic Intergenic 201855 ENSMUSG00000118109.1 ENSMUSG00000118109 ENSMUST00000237424 Gm41815 lincRNA Interval_59978 chr15 62521555 62522645 + 0 NA Intergenic Intergenic -45875 ENSMUSG00000115862.1 ENSMUSG00000115862 ENSMUST00000230029 Gm41333 lincRNA Interval_67027 chr16 41244715 41245445 + 0 NA intron (ENSMUSG00000061080.11, intron 2 of 8) protein_coding-intron (ENSMUSG00000061080.11, intron 2 of 8) 27303 ENSMUSG00000104844.1 ENSMUSG00000104844 ENSMUST00000198352 Gm47276 miRNA Interval_58678 chr15 36998743 36999295 + 0 NA exon (ENSMUSG00000062397.8, exon 4 of 4) protein_coding-exon (ENSMUSG00000062397.8, exon 4 of 4) 5039 ENSMUSG00000062397.8 ENSMUSG00000062397 ENSMUST00000228275 Zfp706 protein_coding Interval_123494 chr5 32919300 32919805 + 0 NA intron (ENSMUSG00000037426.18, intron 21 of 32) protein_coding-intron (ENSMUSG00000037426.18, intron 21 of 32) 5921 ENSMUSG00000089080.1 ENSMUSG00000089080 ENSMUST00000158455 Gm24003 snRNA Interval_122744 chr5 25041389 25041759 + 0 NA intron (ENSMUSG00000028944.14, intron 1 of 15) protein_coding-intron (ENSMUSG00000028944.14, intron 1 of 15) 55732 ENSMUSG00000059631.6 ENSMUSG00000059631 ENSMUST00000075081 1500035N22Rik lincRNA Interval_168850 chr9 88058191 88059228 + 0 NA Intergenic Intergenic -19017 ENSMUSG00000099584.1 ENSMUSG00000099584 ENSMUST00000191349 Gm28877 processed_pseudogene Interval_75748 chr17 70989879 70991334 + 0 NA promoter-TSS (ENSMUSG00000034868.9) protein_coding-promoter-TSS (ENSMUSG00000034868.9) 7957 ENSMUSG00000024048.15 ENSMUSG00000024048 ENSMUST00000128179 Myl12a protein_coding Interval_102840 chr3 32034625 32036148 + 0 NA intron (ENSMUSG00000037610.15, intron 2 of 6) protein_coding-intron (ENSMUSG00000037610.15, intron 1 of 4) 80622 ENSMUSG00000103539.1 ENSMUSG00000103539 ENSMUST00000194517 Gm37834 TEC Interval_92168 chr2 55222056 55223362 + 0 NA Intergenic Intergenic -69356 ENSMUSG00000082301.1 ENSMUSG00000082301 ENSMUST00000117686 Gm14032 processed_pseudogene Interval_48122 chr13 96416177 96416374 + 0 NA TTS (ENSMUSG00000047117.13) protein_coding-TTS (ENSMUSG00000047117.13) 11772 ENSMUSG00000021671.9 ENSMUSG00000021671 ENSMUST00000222792 Poc5 protein_coding Interval_70907 chr17 15778311 15779006 + 0 NA Intergenic Intergenic 40123 ENSMUSG00000023852.14 ENSMUSG00000023852 ENSMUST00000173040 Chd1 protein_coding Interval_16310 chr10 62110444 62111486 + 0 NA promoter-TSS (ENSMUSG00000020083.13) protein_coding-promoter-TSS (ENSMUSG00000020083.13) -22210 ENSMUSG00000044312.4 ENSMUSG00000044312 ENSMUST00000218216 Neurog3 protein_coding Interval_155728 chr8 36536810 36539864 + 0 NA Intergenic Intergenic 49146 ENSMUSG00000039620.17 ENSMUSG00000039620 ENSMUST00000125492 Trmt9b protein_coding Interval_173314 chrX 78202414 78203101 + 0 NA Intergenic Intergenic 15980 ENSMUSG00000067679.3 ENSMUSG00000067679 ENSMUST00000088198 Obp1b protein_coding Interval_29411 chr11 83805206 83805537 + 0 NA Intergenic Intergenic 4907 ENSMUSG00000081342.1 ENSMUSG00000081342 ENSMUST00000122379 Gm11434 processed_pseudogene Interval_156031 chr8 43066795 43067090 + 0 NA Intergenic Intergenic -18645 ENSMUSG00000109627.1 ENSMUSG00000109627 ENSMUST00000209715 Gm45590 processed_pseudogene Interval_42458 chr13 13777127 13777349 + 0 NA exon (ENSMUSG00000019726.12, exon 53 of 53) protein_coding-exon (ENSMUSG00000019726.12, exon 53 of 53) -12106 ENSMUSG00000087898.1 ENSMUSG00000087898 ENSMUST00000157273 Gm25271 misc_RNA Interval_140126 chr6 114490447 114490979 + 0 NA Intergenic Intergenic 87047 ENSMUSG00000053004.9 ENSMUSG00000053004 ENSMUST00000160780 Hrh1 protein_coding Interval_136777 chr6 59667189 59667769 + 0 NA Intergenic Intergenic 38395 ENSMUSG00000094183.1 ENSMUSG00000094183 ENSMUST00000082870 Gm22622 snoRNA Interval_89011 chr2 14475092 14475388 + 0 NA intron (ENSMUSG00000036949.16, intron 11 of 11) protein_coding-intron (ENSMUSG00000036949.16, intron 12 of 12) -37359 ENSMUSG00000084901.6 ENSMUSG00000084901 ENSMUST00000193364 Gm13266 processed_transcript Interval_121636 chr5 4094604 4095056 + 0 NA intron (ENSMUSG00000001467.5, intron 2 of 5) protein_coding-intron (ENSMUSG00000001467.5, intron 5 of 9) 9591 ENSMUSG00000001467.5 ENSMUSG00000001467 ENSMUST00000199909 Cyp51 protein_coding Interval_162172 chr8 125685059 125685418 + 0 NA Intergenic Intergenic 15420 ENSMUSG00000050930.5 ENSMUSG00000050930 ENSMUST00000053078 Map10 protein_coding Interval_161919 chr8 123759845 123762745 + 0 NA intron (ENSMUSG00000110684.1, intron 1 of 1) protein_coding-intron (ENSMUSG00000092329.1, intron 1 of 15) -6256 ENSMUSG00000110456.1 ENSMUSG00000110456 ENSMUST00000211815 Gm45865 TEC Interval_101773 chr3 9508172 9508534 + 0 NA intron (ENSMUSG00000040209.12, intron 1 of 9) protein_coding-intron (ENSMUSG00000040209.12, intron 2 of 8) 12185 ENSMUSG00000103485.1 ENSMUSG00000103485 ENSMUST00000192900 Gm38001 TEC Interval_100155 chr2 167376041 167376547 + 0 NA Intergenic Intergenic -62439 ENSMUSG00000017929.13 ENSMUSG00000017929 ENSMUST00000133557 B4galt5 protein_coding Interval_128292 chr5 112324653 112326701 + 0 NA promoter-TSS (ENSMUSG00000029345.13) protein_coding-promoter-TSS (ENSMUSG00000029345.13) -744 ENSMUSG00000029345.13 ENSMUSG00000029345 ENSMUST00000126736 Tfip11 protein_coding Interval_118855 chr4 134078727 134078984 + 0 NA promoter-TSS (ENSMUSG00000012123.17) protein_coding-promoter-TSS (ENSMUSG00000012123.17) 16186 ENSMUSG00000000682.7 ENSMUSG00000000682 ENSMUST00000137445 Cd52 protein_coding Interval_81338 chr18 58395090 58396080 + 0 NA Intergenic Intergenic -160672 ENSMUSG00000024600.8 ENSMUSG00000024600 ENSMUST00000025500 Slc27a6 protein_coding Interval_55384 chr14 86373311 86373535 + 0 NA Intergenic Intergenic -35099 ENSMUSG00000087812.1 ENSMUSG00000087812 ENSMUST00000157187 Gm25115 snRNA Interval_54224 chr14 66527929 66528261 + 0 NA Intergenic Intergenic 63600 ENSMUSG00000088737.1 ENSMUSG00000088737 ENSMUST00000158112 Gm23899 rRNA Interval_100398 chr2 168819617 168821287 + 0 NA Intergenic Intergenic 54309 ENSMUSG00000085322.2 ENSMUSG00000085322 ENSMUST00000145105 Gm14261 antisense Interval_137246 chr6 70714145 70714665 + 0 NA Intergenic Intergenic -4669 ENSMUSG00000105646.1 ENSMUSG00000105646 ENSMUST00000197227 Gm30211 lincRNA Interval_34278 chr11 121930762 121931707 + 0 NA Intergenic Intergenic 39451 ENSMUSG00000082831.1 ENSMUSG00000082831 ENSMUST00000122407 Gm12591 unprocessed_pseudogene Interval_151076 chr7 118351554 118352146 + 0 NA Intergenic Intergenic 17867 ENSMUSG00000118412.1 ENSMUSG00000118412 ENSMUST00000238497 Gm32766 unitary_pseudogene Interval_122874 chr5 26671353 26671774 + 0 NA Intergenic Intergenic 72125 ENSMUSG00000105491.1 ENSMUSG00000105491 ENSMUST00000200355 Gm42844 processed_pseudogene Interval_111781 chr4 28699486 28699859 + 0 NA Intergenic Intergenic 87346 ENSMUSG00000081011.1 ENSMUSG00000081011 ENSMUST00000119094 Gm11913 processed_pseudogene Interval_160054 chr8 106058758 106060233 + 0 NA promoter-TSS (ENSMUSG00000031902.10) protein_coding-promoter-TSS (ENSMUSG00000031902.10) 655 ENSMUSG00000031902.10 ENSMUSG00000031902 ENSMUST00000212671 Nfatc3 protein_coding Interval_23801 chr11 26409164 26409832 + 0 NA exon (ENSMUSG00000081811.1, exon 1 of 2) processed_pseudogene-exon (ENSMUSG00000081811.1, exon 1 of 2) 291 ENSMUSG00000081811.1 ENSMUSG00000081811 ENSMUST00000118404 Gm12713 processed_pseudogene Interval_14387 chr10 32369290 32369527 + 0 NA TTS (ENSMUSG00000112511.1) unprocessed_pseudogene-TTS (ENSMUSG00000112511.1) 884 ENSMUSG00000112511.1 ENSMUSG00000112511 ENSMUST00000219736 Gm18704 unprocessed_pseudogene Interval_168960 chr9 89737232 89738759 + 0 NA intron (ENSMUSG00000047606.4, intron 1 of 1) protein_coding-intron (ENSMUSG00000047606.4, intron 1 of 1) 480 ENSMUSG00000047606.4 ENSMUSG00000047606 ENSMUST00000185470 Ankrd34c protein_coding Interval_64437 chr16 11349606 11349874 + 0 NA intron (ENSMUSG00000071669.14, intron 2 of 20) protein_coding-intron (ENSMUSG00000071669.14, intron 2 of 7) 26832 ENSMUSG00000071669.14 ENSMUSG00000071669 ENSMUST00000134941 Snx29 protein_coding Interval_7077 chr1 125459551 125459911 + 0 NA Intergenic Intergenic 15164 ENSMUSG00000102063.1 ENSMUSG00000102063 ENSMUST00000186830 Gm28706 lincRNA Interval_85108 chr19 22915618 22917271 + 0 NA intron (ENSMUSG00000052387.16, intron 19 of 24) protein_coding-intron (ENSMUSG00000052387.16, intron 20 of 26) -145010 ENSMUSG00000118155.1 ENSMUSG00000118155 ENSMUST00000235686 Gm50136 lincRNA Interval_35422 chr12 21510406 21511545 + 0 NA Intergenic Intergenic -32332 ENSMUSG00000109975.1 ENSMUSG00000109975 ENSMUST00000209258 Gm19196 transcribed_unprocessed_pseudogene Interval_40190 chr12 102421526 102423201 + 0 NA intron (ENSMUSG00000021190.14, intron 1 of 12) protein_coding-intron (ENSMUSG00000021190.14, intron 2 of 13) -16217 ENSMUSG00000021190.14 ENSMUSG00000021190 ENSMUST00000146499 Lgmn protein_coding Interval_107598 chr3 108805782 108806008 + 0 NA promoter-TSS (ENSMUSG00000027882.18) protein_coding-promoter-TSS (ENSMUSG00000027882.18) 34620 ENSMUSG00000027882.18 ENSMUSG00000027882 ENSMUST00000106596 Stxbp3 protein_coding Interval_87754 chr19 55643347 55644022 + 0 NA Intergenic Intergenic -98580 ENSMUSG00000024985.20 ENSMUSG00000024985 ENSMUST00000148666 Tcf7l2 protein_coding Interval_36301 chr12 40916597 40918107 + 0 NA promoter-TSS (ENSMUSG00000114166.1) processed_pseudogene-promoter-TSS (ENSMUSG00000114166.1) 64 ENSMUSG00000114166.1 ENSMUSG00000114166 ENSMUST00000221023 Gm18246 processed_pseudogene Interval_55459 chr14 87503511 87504002 + 0 NA intron (ENSMUSG00000022019.16, intron 10 of 13) protein_coding-intron (ENSMUSG00000022019.16, intron 10 of 13) 10803 ENSMUSG00000115184.1 ENSMUSG00000115184 ENSMUST00000226795 Gm49197 TEC Interval_11451 chr1 181984691 181986304 + 0 NA TTS (ENSMUSG00000102950.1) TEC-TTS (ENSMUSG00000102950.1) 4707 ENSMUSG00000102950.1 ENSMUSG00000102950 ENSMUST00000192441 Gm37018 TEC Interval_24940 chr11 41750044 41751529 + 0 NA intron (ENSMUSG00000087306.7, intron 2 of 8) processed_transcript-intron (ENSMUSG00000087306.7, intron 2 of 8) 39033 ENSMUSG00000084293.1 ENSMUSG00000084293 ENSMUST00000119666 Gm12143 processed_pseudogene Interval_36986 chr12 55916817 55918036 + 0 NA Intergenic Intergenic -6503 ENSMUSG00000065244.1 ENSMUSG00000065244 ENSMUST00000083310 Gm22296 snRNA Interval_126204 chr5 82259324 82260196 + 0 NA Intergenic Intergenic -77091 ENSMUSG00000106926.1 ENSMUSG00000106926 ENSMUST00000200912 Rpl7-ps7 processed_pseudogene Interval_82973 chr18 80107103 80107683 + 0 NA intron (ENSMUSG00000056214.9, intron 2 of 2) protein_coding-intron (ENSMUSG00000056214.9, intron 2 of 2) -17431 ENSMUSG00000096597.1 ENSMUSG00000096597 ENSMUST00000178391 Gm21886 protein_coding Interval_98948 chr2 156262203 156262764 + 0 NA promoter-TSS (ENSMUSG00000038116.16) protein_coding-promoter-TSS (ENSMUSG00000038116.16) 39603 ENSMUSG00000038116.16 ENSMUSG00000038116 ENSMUST00000122814 Phf20 protein_coding Interval_80715 chr18 46549966 46550476 + 0 NA Intergenic Intergenic -24250 ENSMUSG00000033319.5 ENSMUSG00000033319 ENSMUST00000036226 Fem1c protein_coding Interval_143078 chr6 149122610 149123161 + 0 NA Intergenic Intergenic -7285 ENSMUSG00000067292.3 ENSMUSG00000067292 ENSMUST00000087348 Gm10203 protein_coding Interval_68864 chr16 87678106 87679259 + 0 NA Intergenic Intergenic -20322 ENSMUSG00000025612.5 ENSMUSG00000025612 ENSMUST00000156958 Bach1 protein_coding Interval_88884 chr2 12055326 12055587 + 0 NA Intergenic Intergenic 28536 ENSMUSG00000080801.2 ENSMUSG00000080801 ENSMUST00000120962 Gm13310 processed_pseudogene Interval_58730 chr15 37428693 37429300 + 0 NA promoter-TSS (ENSMUSG00000086992.7) antisense-promoter-TSS (ENSMUSG00000086992.7) 3152 ENSMUSG00000086992.7 ENSMUSG00000086992 ENSMUST00000128804 Gm15941 antisense Interval_111930 chr4 32625843 32626038 + 0 NA intron (ENSMUSG00000028282.12, intron 2 of 10) protein_coding-intron (ENSMUSG00000028282.12, intron 2 of 10) 10467 ENSMUSG00000028282.12 ENSMUSG00000028282 ENSMUST00000108178 Casp8ap2 protein_coding Interval_140404 chr6 117881305 117882200 + 0 NA Intergenic Intergenic -17449 ENSMUSG00000099810.1 ENSMUSG00000099810 ENSMUST00000185716 Gm29509 lincRNA Interval_162025 chr8 124520276 124521208 + 0 NA promoter-TSS (ENSMUSG00000031979.17) protein_coding-promoter-TSS (ENSMUSG00000031979.17) -77 ENSMUSG00000031979.17 ENSMUSG00000031979 ENSMUST00000129977 Cog2 protein_coding Interval_165896 chr9 54403282 54403799 + 0 NA intron (ENSMUSG00000041268.17, intron 11 of 30) protein_coding-intron (ENSMUSG00000041268.17, intron 23 of 43) -21647 ENSMUSG00000041268.17 ENSMUSG00000041268 ENSMUST00000149709 Dmxl2 protein_coding Interval_105178 chr3 83270221 83271488 + 0 NA exon (ENSMUSG00000102692.1, exon 5 of 20) protein_coding-exon (ENSMUSG00000102692.1, exon 5 of 20) -132548 ENSMUSG00000103459.1 ENSMUSG00000103459 ENSMUST00000193692 Gm38096 lincRNA Interval_115887 chr4 105735109 105735865 + 0 NA Intergenic Intergenic -55047 ENSMUSG00000083780.8 ENSMUSG00000083780 ENSMUST00000119740 Gm12728 protein_coding Interval_90830 chr2 32864884 32865109 + 0 NA Intergenic Intergenic 11005 ENSMUSG00000087496.1 ENSMUSG00000087496 ENSMUST00000151820 Gm13523 antisense Interval_37064 chr12 57240701 57241114 + 0 NA intron (ENSMUSG00000047022.18, intron 1 of 6) protein_coding-intron (ENSMUSG00000047022.18, intron 1 of 10) 10480 ENSMUSG00000047022.18 ENSMUSG00000047022 ENSMUST00000128945 Mipol1 protein_coding Interval_68704 chr16 84824066 84825939 + 0 NA exon (ENSMUSG00000053062.16, exon 10 of 10) protein_coding-exon (ENSMUSG00000053062.16, exon 10 of 10) 6905 ENSMUSG00000088249.1 ENSMUSG00000088249 ENSMUST00000157624 Gm25908 rRNA Interval_134046 chr6 18011055 18011352 + 0 NA intron (ENSMUSG00000010797.6, intron 3 of 4) protein_coding-intron (ENSMUSG00000010797.6, intron 3 of 4) 19382 ENSMUSG00000010797.6 ENSMUSG00000010797 ENSMUST00000010941 Wnt2 protein_coding Interval_158800 chr8 86735130 86735992 + 0 NA intron (ENSMUSG00000036840.5, intron 1 of 1) protein_coding-intron (ENSMUSG00000036840.5, intron 1 of 1) -9892 ENSMUSG00000074178.3 ENSMUSG00000074178 ENSMUST00000098532 Gm10638 antisense Interval_106104 chr3 93129899 93131053 + 0 NA Intergenic Intergenic -14313 ENSMUSG00000078657.6 ENSMUSG00000078657 ENSMUST00000192372 Crnn protein_coding Interval_63001 chr15 98600228 98601056 + 0 NA intron (ENSMUSG00000022994.9, intron 2 of 20) protein_coding-intron (ENSMUSG00000022994.9, intron 3 of 21) 4184 ENSMUSG00000022994.9 ENSMUSG00000022994 ENSMUST00000226500 Adcy6 protein_coding Interval_69402 chr16 92777891 92779268 + 0 NA intron (ENSMUSG00000022952.17, intron 1 of 1) protein_coding-intron (ENSMUSG00000022952.17, intron 2 of 7) 47495 ENSMUSG00000022952.17 ENSMUSG00000022952 ENSMUST00000189679 Runx1 protein_coding Interval_80614 chr18 44611922 44612155 + 0 NA intron (ENSMUSG00000071856.10, intron 3 of 18) protein_coding-intron (ENSMUSG00000071856.10, intron 3 of 18) -50065 ENSMUSG00000097610.2 ENSMUSG00000097610 ENSMUST00000202771 A930012L18Rik antisense Interval_164687 chr9 40587176 40589450 + 0 NA Intergenic Intergenic -27384 ENSMUSG00000111858.1 ENSMUSG00000111858 ENSMUST00000214616 Gm48277 lincRNA Interval_159223 chr8 91884306 91885016 + 0 NA Intergenic Intergenic 18790 ENSMUSG00000099664.1 ENSMUSG00000099664 ENSMUST00000191594 Gm28511 lincRNA Interval_145082 chr7 29930034 29930701 + 0 NA TTS (ENSMUSG00000059975.15) protein_coding-TTS (ENSMUSG00000059975.15) 3389 ENSMUSG00000109105.1 ENSMUSG00000109105 ENSMUST00000208490 Gm44873 TEC Interval_62503 chr15 93551914 93552423 + 0 NA intron (ENSMUSG00000036158.12, intron 1 of 7) protein_coding-intron (ENSMUSG00000036158.12, intron 1 of 7) -32645 ENSMUSG00000036158.12 ENSMUSG00000036158 ENSMUST00000048982 Prickle1 protein_coding Interval_70623 chr17 12420912 12422272 + 0 NA intron (ENSMUSG00000023828.3, intron 9 of 9) protein_coding-intron (ENSMUSG00000023828.3, intron 10 of 10) 42933 ENSMUSG00000059481.5 ENSMUSG00000059481 ENSMUST00000232767 Plg protein_coding Interval_52181 chr14 38416583 38416927 + 0 NA intron (ENSMUSG00000041014.17, intron 4 of 8) protein_coding-intron (ENSMUSG00000041014.17, intron 4 of 9) 98851 ENSMUSG00000114219.1 ENSMUSG00000114219 ENSMUST00000225614 Gm31456 lincRNA Interval_130500 chr5 128439429 128441544 + 0 NA Intergenic Intergenic -3930 ENSMUSG00000106275.1 ENSMUSG00000106275 ENSMUST00000200324 Gm42495 lincRNA Interval_59563 chr15 55291769 55292065 + 0 NA Intergenic Intergenic -29314 ENSMUSG00000095792.1 ENSMUSG00000095792 ENSMUST00000179457 Gm26296 snRNA Interval_106149 chr3 93699648 93700303 + 0 NA Intergenic Intergenic -6905 ENSMUSG00000103350.1 ENSMUSG00000103350 ENSMUST00000193565 Tdpoz6 protein_coding Interval_164991 chr9 43737571 43738699 + 0 NA TTS (ENSMUSG00000111334.1) processed_transcript-TTS (ENSMUSG00000111334.1) -1699 ENSMUSG00000111129.1 ENSMUSG00000111129 ENSMUST00000213140 Gm47542 TEC Interval_31205 chr11 98892037 98894490 + 0 NA TTS (ENSMUSG00000038013.14) protein_coding-TTS (ENSMUSG00000038013.14) 2090 ENSMUSG00000038013.14 ENSMUSG00000038013 ENSMUST00000148439 Wipf2 protein_coding Interval_31080 chr11 98030056 98032245 + 0 NA TTS (ENSMUSG00000017404.12) protein_coding-TTS (ENSMUSG00000017404.12) 1737 ENSMUSG00000098992.1 ENSMUSG00000098992 ENSMUST00000184365 Gm27597 miRNA Interval_33802 chr11 118621130 118621367 + 0 NA intron (ENSMUSG00000025576.17, intron 3 of 14) protein_coding-intron (ENSMUSG00000025576.17, intron 3 of 14) -113895 ENSMUSG00000025576.17 ENSMUSG00000025576 ENSMUST00000134774 Rbfox3 protein_coding Interval_5518 chr1 89513270 89514119 + 0 NA intron (ENSMUSG00000055013.16, intron 1 of 16) protein_coding-intron (ENSMUSG00000055013.16, intron 1 of 17) 30256 ENSMUSG00000104114.1 ENSMUSG00000104114 ENSMUST00000192974 Gm37297 TEC Interval_114109 chr4 63486446 63487223 + 0 NA intron (ENSMUSG00000039137.18, intron 1 of 2) protein_coding-intron (ENSMUSG00000039137.18, intron 1 of 11) -53512 ENSMUSG00000039137.18 ENSMUSG00000039137 ENSMUST00000140720 Whrn protein_coding Interval_91370 chr2 38336603 38337075 + 0 NA Intergenic Intergenic 11477 ENSMUSG00000098383.1 ENSMUSG00000098383 ENSMUST00000184325 Gm27197 antisense Interval_28674 chr11 77697281 77697540 + 0 NA intron (ENSMUSG00000037857.16, intron 2 of 3) protein_coding-intron (ENSMUSG00000037857.16, intron 2 of 3) 11238 ENSMUSG00000037857.16 ENSMUSG00000037857 ENSMUST00000155238 Nufip2 protein_coding Interval_135385 chr6 38833057 38833657 + 0 NA intron (ENSMUSG00000061436.15, intron 1 of 14) protein_coding-intron (ENSMUSG00000061436.15, intron 1 of 1) 42566 ENSMUSG00000061436.15 ENSMUSG00000061436 ENSMUST00000114855 Hipk2 protein_coding Interval_148071 chr7 79035992 79037362 + 0 NA intron (ENSMUSG00000097441.1, intron 1 of 2) antisense-intron (ENSMUSG00000097441.1, intron 1 of 2) 16646 ENSMUSG00000097441.1 ENSMUSG00000097441 ENSMUST00000180546 Gm26633 antisense Interval_145717 chr7 37695002 37696018 + 0 NA intron (ENSMUSG00000043456.17, intron 2 of 3) protein_coding-intron (ENSMUSG00000043456.17, intron 2 of 5) 25711 ENSMUSG00000093540.2 ENSMUSG00000093540 ENSMUST00000175854 4930505M18Rik antisense Interval_94806 chr2 94500362 94500980 + 0 NA Intergenic Intergenic 37398 ENSMUSG00000106196.1 ENSMUSG00000106196 ENSMUST00000116740 Gm44461 miRNA Interval_166437 chr9 59460228 59461010 + 0 NA intron (ENSMUSG00000025234.11, intron 1 of 13) protein_coding-intron (ENSMUSG00000025234.11, intron 1 of 11) 11614 ENSMUSG00000090516.1 ENSMUSG00000090516 ENSMUST00000171632 Rps11-ps1 processed_pseudogene Interval_79312 chr18 30358907 30359701 + 0 NA Intergenic Intergenic 60756 ENSMUSG00000117345.1 ENSMUSG00000117345 ENSMUST00000234753 Gm7926 processed_pseudogene Interval_64972 chr16 17611811 17613016 + 0 NA Intergenic Intergenic -6950 ENSMUSG00000005899.14 ENSMUSG00000005899 ENSMUST00000232270 Smpd4 protein_coding Interval_29110 chr11 80392889 80393101 + 0 NA intron (ENSMUSG00000017421.18, intron 8 of 16) protein_coding-intron (ENSMUSG00000017421.18, intron 8 of 10) 9716 ENSMUSG00000017421.18 ENSMUSG00000017421 ENSMUST00000123726 Zfp207 protein_coding Interval_106788 chr3 100826482 100826985 + 0 NA intron (ENSMUSG00000051076.8, intron 1 of 5) protein_coding-intron (ENSMUSG00000051076.8, intron 1 of 5) 1274 ENSMUSG00000051076.8 ENSMUSG00000051076 ENSMUST00000054791 Vtcn1 protein_coding Interval_105575 chr3 87852615 87853358 + 0 NA TTS (ENSMUSG00000028071.12) protein_coding-TTS (ENSMUSG00000028071.12) 5975 ENSMUSG00000028071.12 ENSMUSG00000028071 ENSMUST00000194639 Sh2d2a protein_coding Interval_116032 chr4 107123568 107124248 + 0 NA Intergenic Intergenic -2705 ENSMUSG00000085304.1 ENSMUSG00000085304 ENSMUST00000145510 Gm12802 antisense Interval_11306 chr1 180863447 180864269 + 0 NA intron (ENSMUSG00000038806.7, intron 1 of 1) protein_coding-intron (ENSMUSG00000038806.7, intron 6 of 6) 1758 ENSMUSG00000038806.7 ENSMUSG00000038806 ENSMUST00000194948 Sde2 protein_coding Interval_4139 chr1 70362435 70362701 + 0 NA intron (ENSMUSG00000053153.14, intron 4 of 7) protein_coding-intron (ENSMUSG00000053153.14, intron 13 of 16) -49657 ENSMUSG00000103052.1 ENSMUSG00000103052 ENSMUST00000194431 Gm38272 TEC Interval_12663 chr10 4219139 4219357 + 0 NA Intergenic Intergenic -6134 ENSMUSG00000111266.1 ENSMUSG00000111266 ENSMUST00000213553 Gm30570 lincRNA Interval_33082 chr11 114261822 114262528 + 0 NA Intergenic Intergenic 10332 ENSMUSG00000075431.6 ENSMUSG00000075431 ENSMUST00000130963 Gm11691 lincRNA Interval_29447 chr11 84061415 84062285 + 0 NA intron (ENSMUSG00000018648.15, intron 1 of 2) protein_coding-intron (ENSMUSG00000018648.15, intron 2 of 3) 6729 ENSMUSG00000018648.15 ENSMUSG00000018648 ENSMUST00000138208 Dusp14 protein_coding Interval_140482 chr6 118646614 118647031 + 0 NA intron (ENSMUSG00000051331.16, intron 27 of 44) protein_coding-intron (ENSMUSG00000051331.16, intron 29 of 46) -27598 ENSMUSG00000100867.1 ENSMUSG00000100867 ENSMUST00000185373 Gm18981 processed_pseudogene Interval_115702 chr4 102697875 102698096 + 0 NA Intergenic Intergenic -38827 ENSMUSG00000077260.1 ENSMUSG00000077260 ENSMUST00000104072 Gm24869 snoRNA Interval_157770 chr8 72940847 72941859 + 0 NA intron (ENSMUSG00000004383.18, intron 7 of 15) protein_coding-intron (ENSMUSG00000004383.18, intron 6 of 14) -75159 ENSMUSG00000093140.1 ENSMUSG00000093140 ENSMUST00000175399 Mir28b miRNA Interval_158173 chr8 79529529 79530123 + 0 NA Intergenic Intergenic 20922 ENSMUSG00000097975.1 ENSMUSG00000097975 ENSMUST00000182695 Gm8079 processed_pseudogene Interval_30491 chr11 94716791 94717798 + 0 NA Intergenic Intergenic -12795 ENSMUSG00000056008.1 ENSMUSG00000056008 ENSMUST00000069852 Gm11541 protein_coding Interval_89363 chr2 19890880 19891167 + 0 NA Intergenic Intergenic 2370 ENSMUSG00000105927.1 ENSMUSG00000105927 ENSMUST00000198109 Gm44457 miRNA Interval_118039 chr4 128560090 128560809 + 0 NA intron (ENSMUSG00000028804.20, intron 4 of 7) protein_coding-intron (ENSMUSG00000028804.20, intron 67 of 70) 7874 ENSMUSG00000028804.20 ENSMUSG00000028804 ENSMUST00000221199 Csmd2 protein_coding Interval_166037 chr9 55828186 55829223 + 0 NA intron (ENSMUSG00000034007.10, intron 16 of 32) protein_coding-intron (ENSMUSG00000034007.10, intron 14 of 30) 109406 ENSMUSG00000034007.10 ENSMUSG00000034007 ENSMUST00000215323 Scaper protein_coding Interval_88913 chr2 12744081 12744633 + 0 NA Intergenic Intergenic 46940 ENSMUSG00000104045.1 ENSMUSG00000104045 ENSMUST00000192277 Gm37565 lincRNA Interval_92710 chr2 63551403 63551983 + 0 NA Intergenic Intergenic -119499 ENSMUSG00000065837.1 ENSMUSG00000065837 ENSMUST00000083903 Gm23503 snRNA Interval_154397 chr8 15584006 15585178 + 0 NA promoter-TSS (ENSMUSG00000110356.1) lincRNA-promoter-TSS (ENSMUSG00000110356.1) -131 ENSMUSG00000110217.1 ENSMUSG00000110217 ENSMUST00000211080 Gm45408 lincRNA Interval_82479 chr18 74347559 74349282 + 0 NA promoter-TSS (ENSMUSG00000035394.11) protein_coding-promoter-TSS (ENSMUSG00000035394.11) -566 ENSMUSG00000035394.11 ENSMUSG00000035394 ENSMUST00000177407 Cfap53 protein_coding Interval_150614 chr7 112822977 112824013 + 0 NA intron (ENSMUSG00000055320.18, intron 2 of 13) protein_coding-intron (ENSMUSG00000055320.18, intron 2 of 13) 109544 ENSMUSG00000106046.1 ENSMUSG00000106046 ENSMUST00000199696 Gm44462 miRNA Interval_164993 chr9 43749973 43750282 + 0 NA intron (ENSMUSG00000032012.9, intron 1 of 7) protein_coding-intron (ENSMUSG00000032012.9, intron 1 of 5) 5483 ENSMUSG00000032012.9 ENSMUSG00000032012 ENSMUST00000180221 Nectin1 protein_coding Interval_112331 chr4 40594071 40597549 + 0 NA Intergenic Intergenic -70262 ENSMUSG00000086355.1 ENSMUSG00000086355 ENSMUST00000146043 4933428C19Rik lincRNA Interval_27487 chr11 68164146 68164775 + 0 NA intron (ENSMUSG00000020903.13, intron 6 of 6) protein_coding-intron (ENSMUSG00000020903.13, intron 7 of 7) 31693 ENSMUSG00000087242.2 ENSMUSG00000087242 ENSMUST00000152781 C78197 antisense Interval_71090 chr17 17863043 17863361 + 0 NA Intergenic Intergenic -7997 ENSMUSG00000003665.7 ENSMUSG00000003665 ENSMUST00000232410 Has1 protein_coding Interval_88243 chr19 61090191 61090423 + 0 NA intron (ENSMUSG00000003228.9, intron 14 of 15) protein_coding-intron (ENSMUSG00000003228.9, intron 14 of 15) 50510 ENSMUSG00000074733.14 ENSMUSG00000074733 ENSMUST00000148569 Zfp950 protein_coding Interval_20317 chr10 116848600 116849412 + 0 NA intron (ENSMUSG00000034057.8, intron 4 of 24) protein_coding-intron (ENSMUSG00000034057.8, intron 4 of 24) 47913 ENSMUSG00000034057.8 ENSMUSG00000034057 ENSMUST00000048229 Myrfl protein_coding Interval_84015 chr19 6117748 6119054 + 0 NA TTS (ENSMUSG00000024787.14) protein_coding-TTS (ENSMUSG00000024787.14) 249 ENSMUSG00000024790.8 ENSMUSG00000024790 ENSMUST00000113533 Sac3d1 protein_coding Interval_33878 chr11 119155940 119157316 + 0 NA intron (ENSMUSG00000039976.4, intron 6 of 11) protein_coding-intron (ENSMUSG00000039976.4, intron 6 of 11) -2491 ENSMUSG00000098704.1 ENSMUSG00000098704 ENSMUST00000183965 Mir6934 miRNA Interval_41409 chr12 113487600 113488263 + 0 NA Intergenic Intergenic -1580 ENSMUSG00000051804.3 ENSMUSG00000051804 ENSMUST00000063317 Adam6b protein_coding Interval_131345 chr5 136619918 136620216 + 0 NA Intergenic Intergenic -52577 ENSMUSG00000029705.17 ENSMUSG00000029705 ENSMUST00000177305 Cux1 protein_coding Interval_153129 chr7 141530368 141530567 + 0 NA intron (ENSMUSG00000025512.15, intron 2 of 12) protein_coding-intron (ENSMUSG00000025512.15, intron 2 of 10) 9365 ENSMUSG00000025512.15 ENSMUSG00000025512 ENSMUST00000133359 Chid1 protein_coding Interval_8562 chr1 142466926 142467121 + 0 NA Intergenic Intergenic -11209 ENSMUSG00000099671.2 ENSMUSG00000099671 ENSMUST00000191024 Gm18183 processed_pseudogene Interval_158275 chr8 80763051 80763610 + 0 NA Intergenic Intergenic -7361 ENSMUSG00000109584.1 ENSMUSG00000109584 ENSMUST00000210546 Gm7997 processed_pseudogene Interval_168433 chr9 80276267 80277086 + 0 NA intron (ENSMUSG00000033577.18, intron 20 of 35) protein_coding-intron (ENSMUSG00000033577.18, intron 20 of 32) -11226 ENSMUSG00000099016.1 ENSMUSG00000099016 ENSMUST00000183413 Gm27227 antisense Interval_58637 chr15 36713856 36714082 + 0 NA Intergenic Intergenic -9678 ENSMUSG00000115103.1 ENSMUSG00000115103 ENSMUST00000226969 Gm49263 lincRNA Interval_755 chr1 10695116 10696154 + 0 NA TTS (ENSMUSG00000081417.1) processed_pseudogene-TTS (ENSMUSG00000081417.1) 512 ENSMUSG00000081417.1 ENSMUSG00000081417 ENSMUST00000119252 Gm15603 processed_pseudogene Interval_1888 chr1 34309048 34309656 + 0 NA TTS (ENSMUSG00000026131.20) protein_coding-TTS (ENSMUSG00000026131.20) 20955 ENSMUSG00000104397.1 ENSMUSG00000104397 ENSMUST00000193131 Gm37958 lincRNA Interval_6126 chr1 97726771 97727784 + 0 NA exon (ENSMUSG00000040648.14, exon 23 of 28) protein_coding-exon (ENSMUSG00000040648.14, exon 23 of 28) -10731 ENSMUSG00000040648.14 ENSMUSG00000040648 ENSMUST00000152788 Ppip5k2 protein_coding Interval_112456 chr4 41365125 41365388 + 0 NA intron (ENSMUSG00000028437.14, intron 1 of 2) protein_coding-intron (ENSMUSG00000028437.14, intron 1 of 6) -5992 ENSMUSG00000028437.14 ENSMUSG00000028437 ENSMUST00000132235 Ubap1 protein_coding Interval_50192 chr14 9254154 9254791 + 0 NA Intergenic Intergenic -146152 ENSMUSG00000114615.1 ENSMUSG00000114615 ENSMUST00000224264 Gm48370 lincRNA Interval_28794 chr11 78368443 78368682 + 0 NA intron (ENSMUSG00000002057.4, intron 4 of 8) protein_coding-intron (ENSMUSG00000002057.4, intron 4 of 8) 17996 ENSMUSG00000002057.4 ENSMUSG00000002057 ENSMUST00000108294 Foxn1 protein_coding Interval_126334 chr5 86782705 86783467 + 0 NA promoter-TSS (ENSMUSG00000104937.1) lincRNA-promoter-TSS (ENSMUSG00000104937.1) -53 ENSMUSG00000104937.1 ENSMUSG00000104937 ENSMUST00000196789 Gm43057 lincRNA Interval_131106 chr5 135168082 135169287 + 0 NA intron (ENSMUSG00000029681.12, intron 1 of 4) protein_coding-intron (ENSMUSG00000029681.12, intron 1 of 5) 239 ENSMUSG00000029681.12 ENSMUSG00000029681 ENSMUST00000145329 Bcl7b protein_coding Interval_9366 chr1 156606123 156607047 + 0 NA intron (ENSMUSG00000026596.13, intron 1 of 2) protein_coding-intron (ENSMUSG00000026596.13, intron 1 of 11) -9338 ENSMUSG00000026596.13 ENSMUSG00000026596 ENSMUST00000190749 Abl2 protein_coding Interval_148996 chr7 91091224 91091433 + 0 NA intron (ENSMUSG00000052572.19, intron 1 of 13) protein_coding-intron (ENSMUSG00000052572.19, intron 1 of 22) 31883 ENSMUSG00000098805.1 ENSMUSG00000098805 ENSMUST00000184070 Gm27470 misc_RNA Interval_54918 chr14 76235199 76237683 + 0 NA TTS (ENSMUSG00000095427.2) processed_pseudogene-TTS (ENSMUSG00000095427.2) 1104 ENSMUSG00000095427.2 ENSMUSG00000095427 ENSMUST00000095471 Rps2-ps6 processed_pseudogene Interval_157171 chr8 66869345 66869888 + 0 NA intron (ENSMUSG00000014907.10, intron 2 of 7) protein_coding-intron (ENSMUSG00000014907.10, intron 2 of 7) 8659 ENSMUSG00000014907.10 ENSMUSG00000014907 ENSMUST00000212916 Naf1 protein_coding Interval_108953 chr3 133563770 133564015 + 0 NA intron (ENSMUSG00000105085.1, intron 1 of 2) antisense-intron (ENSMUSG00000105085.1, intron 1 of 2) 16009 ENSMUSG00000105595.1 ENSMUSG00000105595 ENSMUST00000197855 Gm49316 processed_pseudogene Interval_64228 chr16 9353766 9355189 + 0 NA Intergenic Intergenic 195707 ENSMUSG00000116123.1 ENSMUSG00000116123 ENSMUST00000229655 Gm49451 lincRNA Interval_31715 chr11 102399345 102401261 + 0 NA TTS (ENSMUSG00000006575.14) protein_coding-TTS (ENSMUSG00000006575.14) 1136 ENSMUSG00000006575.14 ENSMUSG00000006575 ENSMUST00000132876 Rundc3a protein_coding Interval_117656 chr4 125328759 125329037 + 0 NA Intergenic Intergenic 100301 ENSMUSG00000087010.1 ENSMUSG00000087010 ENSMUST00000130055 1700041M05Rik lincRNA Interval_60209 chr15 68180512 68181005 + 0 NA exon (ENSMUSG00000022335.17, exon 5 of 5) protein_coding-exon (ENSMUSG00000022335.17, exon 5 of 5) 78029 ENSMUSG00000022335.17 ENSMUSG00000022335 ENSMUST00000161139 Zfat protein_coding Interval_140451 chr6 118314053 118316028 + 0 NA Intergenic Intergenic -6656 ENSMUSG00000107933.1 ENSMUSG00000107933 ENSMUST00000204033 Gm30498 lincRNA Interval_91203 chr2 35882930 35883119 + 0 NA intron (ENSMUSG00000026885.13, intron 6 of 9) protein_coding-intron (ENSMUSG00000026885.13, intron 6 of 9) 38829 ENSMUSG00000106994.1 ENSMUSG00000106994 ENSMUST00000202084 Gm10829 TEC Interval_167464 chr9 69612630 69612895 + 0 NA Intergenic Intergenic -13008 ENSMUSG00000111096.1 ENSMUSG00000111096 ENSMUST00000215589 Gm47203 processed_pseudogene Interval_148446 chr7 81320557 81322176 + 0 NA intron (ENSMUSG00000025584.17, intron 17 of 21) protein_coding-intron (ENSMUSG00000025584.17, intron 17 of 21) 14673 ENSMUSG00000025584.17 ENSMUSG00000025584 ENSMUST00000130494 Pde8a protein_coding Interval_69217 chr16 91425912 91426321 + 0 NA TTS (ENSMUSG00000022969.13) protein_coding-TTS (ENSMUSG00000022969.13) 19952 ENSMUSG00000022969.13 ENSMUSG00000022969 ENSMUST00000137612 Il10rb protein_coding Interval_57092 chr15 6044069 6045573 + 0 NA Intergenic Intergenic 9860 ENSMUSG00000115093.1 ENSMUSG00000115093 ENSMUST00000227373 Gm8047 processed_pseudogene Interval_48265 chr13 97520825 97522021 + 0 NA Intergenic Intergenic 6032 ENSMUSG00000114415.1 ENSMUSG00000114415 ENSMUST00000225416 Gm41030 lincRNA Interval_106935 chr3 102048857 102050220 + 0 NA Intergenic Intergenic -18512 ENSMUSG00000104930.1 ENSMUSG00000104930 ENSMUST00000199964 Gm43243 processed_pseudogene Interval_30424 chr11 94286120 94286971 + 0 NA TTS (ENSMUSG00000094091.3) protein_coding-TTS (ENSMUSG00000094091.3) 4672 ENSMUSG00000094091.3 ENSMUSG00000094091 ENSMUST00000178891 Gm21885 protein_coding Interval_151413 chr7 122191031 122191629 + 0 NA Intergenic Intergenic -5123 ENSMUSG00000030866.8 ENSMUSG00000030866 ENSMUST00000033153 Ern2 protein_coding Interval_89864 chr2 26084822 26085032 + 0 NA intron (ENSMUSG00000026932.14, intron 2 of 2) protein_coding-intron (ENSMUSG00000026932.14, intron 2 of 5) 6892 ENSMUSG00000026932.14 ENSMUSG00000026932 ENSMUST00000149408 Nacc2 protein_coding Interval_137865 chr6 83032546 83034266 + 0 NA promoter-TSS (ENSMUSG00000000693.10) protein_coding-promoter-TSS (ENSMUSG00000000693.10) -845 ENSMUSG00000068335.6 ENSMUSG00000068335 ENSMUST00000204900 Dok1 protein_coding Interval_162507 chr9 3424926 3426207 + 0 NA intron (ENSMUSG00000025898.6, intron 6 of 7) protein_coding-intron (ENSMUSG00000025898.6, intron 6 of 17) 21478 ENSMUSG00000025898.6 ENSMUSG00000025898 ENSMUST00000212101 Cwf19l2 protein_coding Interval_160869 chr8 114390369 114390606 + 0 NA Intergenic Intergenic -27599 ENSMUSG00000008874.3 ENSMUSG00000008874 ENSMUST00000009018 Clec3a protein_coding Interval_125621 chr5 72822504 72822827 + 0 NA TTS (ENSMUSG00000029217.16) protein_coding-TTS (ENSMUSG00000029217.16) -10591 ENSMUSG00000106739.1 ENSMUSG00000106739 ENSMUST00000202091 Gm43499 TEC Interval_107396 chr3 107273834 107274267 + 0 NA Intergenic Intergenic -4949 ENSMUSG00000087260.5 ENSMUSG00000087260 ENSMUST00000199317 Lamtor5 protein_coding Interval_101104 chr2 178007276 178008727 + 0 NA Intergenic Intergenic -15378 ENSMUSG00000074519.11 ENSMUSG00000074519 ENSMUST00000108926 Zfp971 protein_coding Interval_98492 chr2 152766101 152766781 + 0 NA Intergenic Intergenic 6448 ENSMUSG00000093306.1 ENSMUSG00000093306 ENSMUST00000175565 Gm23802 miRNA Interval_60351 chr15 73119140 73119492 + 0 NA intron (ENSMUSG00000036698.11, intron 13 of 18) protein_coding-intron (ENSMUSG00000036698.11, intron 13 of 18) 28904 ENSMUSG00000068391.8 ENSMUSG00000068391 ENSMUST00000137698 Chrac1 protein_coding Interval_62234 chr15 89058864 89060787 + 0 NA promoter-TSS (ENSMUSG00000058441.7) protein_coding-promoter-TSS (ENSMUSG00000058441.7) 78 ENSMUSG00000058441.7 ENSMUSG00000058441 ENSMUST00000159960 Panx2 protein_coding Interval_92972 chr2 69060306 69061579 + 0 NA intron (ENSMUSG00000027035.10, intron 6 of 10) protein_coding-intron (ENSMUSG00000027035.10, intron 6 of 9) 42846 ENSMUSG00000102662.1 ENSMUSG00000102662 ENSMUST00000193253 Gm38377 TEC Interval_73125 chr17 34948945 34953190 + 0 NA promoter-TSS (ENSMUSG00000093009.1) snoRNA-promoter-TSS (ENSMUSG00000093009.1) -50 ENSMUSG00000093009.1 ENSMUSG00000093009 ENSMUST00000175268 Snord52 snoRNA Interval_42867 chr13 20743325 20744426 + 0 NA Intergenic Intergenic -4623 ENSMUSG00000113168.1 ENSMUSG00000113168 ENSMUST00000222235 Gm7614 processed_pseudogene Interval_148033 chr7 78576959 78580262 + 0 NA promoter-TSS (ENSMUSG00000059146.12) protein_coding-promoter-TSS (ENSMUSG00000059146.12) 88 ENSMUSG00000059146.12 ENSMUSG00000059146 ENSMUST00000205411 Ntrk3 protein_coding Interval_76464 chr17 80391296 80392307 + 0 NA intron (ENSMUSG00000054901.7, intron 1 of 1) protein_coding-intron (ENSMUSG00000054901.7, intron 1 of 1) 10437 ENSMUSG00000054901.7 ENSMUSG00000054901 ENSMUST00000226013 Arhgef33 protein_coding Interval_160098 chr8 106412183 106412653 + 0 NA Intergenic Intergenic -2909 ENSMUSG00000031907.9 ENSMUSG00000031907 ENSMUST00000212874 Zfp90 protein_coding Interval_134138 chr6 21753481 21754130 + 0 NA Intergenic Intergenic 72504 ENSMUSG00000106855.1 ENSMUSG00000106855 ENSMUST00000201318 5330437M03Rik TEC Interval_115446 chr4 99014924 99015484 + 0 NA intron (ENSMUSG00000028556.15, intron 18 of 47) protein_coding-intron (ENSMUSG00000028556.15, intron 18 of 48) -17975 ENSMUSG00000028553.12 ENSMUSG00000028553 ENSMUST00000125546 Angptl3 protein_coding Interval_43308 chr13 28945472 28945855 + 0 NA Intergenic Intergenic 8050 ENSMUSG00000076431.4 ENSMUSG00000076431 ENSMUST00000067230 Sox4 protein_coding Interval_74013 chr17 46056321 46057091 + 0 NA Intergenic Intergenic 27560 ENSMUSG00000117287.1 ENSMUSG00000117287 ENSMUST00000233284 Gm36200 lincRNA Interval_97547 chr2 139717812 139718023 + 0 NA intron (ENSMUSG00000074766.10, intron 1 of 5) protein_coding-intron (ENSMUSG00000074766.10, intron 1 of 5) 39739 ENSMUSG00000074766.10 ENSMUSG00000074766 ENSMUST00000099307 Ism1 protein_coding Interval_18564 chr10 87807048 87807357 + 0 NA Intergenic Intergenic -52409 ENSMUSG00000020053.18 ENSMUSG00000020053 ENSMUST00000122100 Igf1 protein_coding Interval_128184 chr5 111580975 111581729 + 0 NA promoter-TSS (ENSMUSG00000052848.7) lincRNA-promoter-TSS (ENSMUSG00000052848.7) -209 ENSMUSG00000052848.7 ENSMUSG00000052848 ENSMUST00000198458 C130026L21Rik lincRNA Interval_39956 chr12 100105918 100108535 + 0 NA Intergenic Intergenic -2989 ENSMUSG00000021178.9 ENSMUSG00000021178 ENSMUST00000221308 Psmc1 protein_coding Interval_224 KV575236.1 72563 72801 + 0 NA NA NA NA NA Interval_7565 chr1 132247200 132247900 + 0 NA intron (ENSMUSG00000079330.9, intron 4 of 4) protein_coding-intron (ENSMUSG00000079330.9, intron 3 of 3) -17783 ENSMUSG00000066936.4 ENSMUSG00000066936 ENSMUST00000086544 Gm10188 protein_coding Interval_91347 chr2 37981965 37982184 + 0 NA intron (ENSMUSG00000035392.17, intron 3 of 4) protein_coding-intron (ENSMUSG00000035392.17, intron 11 of 21) 37093 ENSMUSG00000107586.1 ENSMUSG00000107586 ENSMUST00000204461 Gm44283 TEC Interval_92571 chr2 60774502 60775158 + 0 NA intron (ENSMUSG00000026970.16, intron 6 of 14) protein_coding-intron (ENSMUSG00000026970.16, intron 6 of 13) -101104 ENSMUSG00000026971.15 ENSMUSG00000026971 ENSMUST00000142696 Itgb6 protein_coding Interval_77468 chr17 89271177 89272714 + 0 NA Intergenic Intergenic -48282 ENSMUSG00000117364.1 ENSMUSG00000117364 ENSMUST00000234989 4933400B14Rik lincRNA Interval_47153 chr13 76527556 76528120 + 0 NA intron (ENSMUSG00000021596.16, intron 1 of 20) protein_coding-intron (ENSMUSG00000021596.16, intron 1 of 20) 76612 ENSMUSG00000096675.1 ENSMUSG00000096675 ENSMUST00000104507 Gm24519 snoRNA Interval_140332 chr6 116639063 116640430 + 0 NA intron (ENSMUSG00000042129.8, intron 2 of 2) protein_coding-intron (ENSMUSG00000042129.8, intron 9 of 10) 6301 ENSMUSG00000098334.1 ENSMUSG00000098334 ENSMUST00000184219 Mir7043 miRNA Interval_169403 chr9 96995560 96996315 + 0 NA exon (ENSMUSG00000046997.5, exon 2 of 3) protein_coding-exon (ENSMUSG00000046997.5, exon 2 of 3) -11742 ENSMUSG00000046997.5 ENSMUSG00000046997 ENSMUST00000064445 Spsb4 protein_coding Interval_79979 chr18 36409627 36410314 + 0 NA intron (ENSMUSG00000024346.6, intron 2 of 2) protein_coding-intron (ENSMUSG00000024346.6, intron 3 of 3) 44554 ENSMUSG00000024346.6 ENSMUSG00000024346 ENSMUST00000237499 Pfdn1 protein_coding Interval_71704 chr17 25570051 25571545 + 0 NA promoter-TSS (ENSMUSG00000024176.10) protein_coding-promoter-TSS (ENSMUSG00000024176.10) -46 ENSMUSG00000091475.4 ENSMUSG00000091475 ENSMUST00000234504 Cerox1 processed_transcript Interval_166842 chr9 63144232 63147538 + 0 NA exon (ENSMUSG00000022245.15, exon 2 of 9) protein_coding-exon (ENSMUSG00000022245.15, exon 2 of 9) 1126 ENSMUSG00000022245.15 ENSMUSG00000022245 ENSMUST00000055281 Skor1 protein_coding Interval_139709 chr6 107788119 107788799 + 0 NA Intergenic Intergenic -92614 ENSMUSG00000107475.1 ENSMUSG00000107475 ENSMUST00000204520 Gm19177 processed_pseudogene Interval_13224 chr10 13192581 13193823 + 0 NA promoter-TSS (ENSMUSG00000019814.5) protein_coding-promoter-TSS (ENSMUSG00000019814.5) -774 ENSMUSG00000019814.5 ENSMUSG00000019814 ENSMUST00000219824 Ltv1 protein_coding Interval_14117 chr10 27654603 27654930 + 0 NA intron (ENSMUSG00000112610.1, intron 2 of 4) lincRNA-intron (ENSMUSG00000112610.1, intron 2 of 4) -39438 ENSMUSG00000103931.1 ENSMUSG00000103931 ENSMUST00000192114 Gm36962 TEC Interval_93757 chr2 76658525 76658756 + 0 NA TTS (ENSMUSG00000075267.9) protein_coding-TTS (ENSMUSG00000075267.9) 10164 ENSMUSG00000075267.9 ENSMUSG00000075267 ENSMUST00000099986 Pjvk protein_coding Interval_81276 chr18 57329346 57329792 + 0 NA Intergenic Intergenic -4736 ENSMUSG00000117802.1 ENSMUSG00000117802 ENSMUST00000235699 Gm18929 unprocessed_pseudogene Interval_171057 chr9 114038861 114039981 + 0 NA intron (ENSMUSG00000032507.15, intron 1 of 3) protein_coding-intron (ENSMUSG00000032507.15, intron 1 of 3) -12695 ENSMUSG00000032507.15 ENSMUSG00000032507 ENSMUST00000141832 Fbxl2 protein_coding Interval_68290 chr16 72649266 72650033 + 0 NA intron (ENSMUSG00000022883.11, intron 1 of 28) protein_coding-intron (ENSMUSG00000022883.11, intron 1 of 1) -277208 ENSMUSG00000116910.1 ENSMUSG00000116910 ENSMUST00000232381 Gm49670 processed_pseudogene Interval_110165 chr3 153912518 153913567 + 0 NA promoter-TSS (ENSMUSG00000065463.1) snoRNA-promoter-TSS (ENSMUSG00000065463.1) -53 ENSMUSG00000105820.1 ENSMUSG00000105820 ENSMUST00000197294 Gm43400 antisense Interval_64337 chr16 10599814 10600701 + 0 NA promoter-TSS (ENSMUSG00000068663.14) protein_coding-promoter-TSS (ENSMUSG00000068663.14) 54893 ENSMUSG00000068663.14 ENSMUSG00000068663 ENSMUST00000145866 Clec16a protein_coding Interval_161601 chr8 121497220 121497666 + 0 NA intron (ENSMUSG00000092329.1, intron 1 of 15) protein_coding-intron (ENSMUSG00000092329.1, intron 1 of 15) 44426 ENSMUSG00000031809.10 ENSMUSG00000031809 ENSMUST00000182460 1700018B08Rik protein_coding Interval_37220 chr12 61154416 61155215 + 0 NA Intergenic Intergenic -40311 ENSMUSG00000114112.1 ENSMUSG00000114112 ENSMUST00000220664 Gm48301 lincRNA Interval_4689 chr1 77259581 77260063 + 0 NA Intergenic Intergenic -112830 ENSMUSG00000102904.1 ENSMUSG00000102904 ENSMUST00000193479 Gm38265 TEC Interval_73232 chr17 35697590 35698519 + 0 NA promoter-TSS (ENSMUSG00000003534.17) protein_coding-promoter-TSS (ENSMUSG00000003534.17) 1255 ENSMUSG00000093921.1 ENSMUSG00000093921 ENSMUST00000177607 Gm23864 snRNA Interval_96766 chr2 127922285 127922947 + 0 NA intron (ENSMUSG00000027380.10, intron 2 of 10) protein_coding-intron (ENSMUSG00000027380.10, intron 9 of 17) 30628 ENSMUSG00000093203.1 ENSMUSG00000093203 ENSMUST00000175462 Gm22411 miRNA Interval_55427 chr14 87123107 87123948 + 0 NA intron (ENSMUSG00000022021.14, intron 1 of 26) protein_coding-intron (ENSMUSG00000022021.14, intron 1 of 27) 17708 ENSMUSG00000022021.14 ENSMUSG00000022021 ENSMUST00000226134 Diaph3 protein_coding Interval_91992 chr2 52339054 52339893 + 0 NA promoter-TSS (ENSMUSG00000026950.18) protein_coding-promoter-TSS (ENSMUSG00000026950.18) -3711 ENSMUSG00000026950.18 ENSMUSG00000026950 ENSMUST00000136769 Neb protein_coding Interval_86300 chr19 38487712 38488853 + 0 NA intron (ENSMUSG00000024998.17, intron 1 of 32) protein_coding-intron (ENSMUSG00000024998.17, intron 1 of 2) -15080 ENSMUSG00000088940.1 ENSMUSG00000088940 ENSMUST00000158315 Gm24930 misc_RNA Interval_138949 chr6 93716600 93718577 + 0 NA intron (ENSMUSG00000045095.16, intron 12 of 24) protein_coding-intron (ENSMUSG00000045095.16, intron 11 of 21) -67363 ENSMUSG00000107739.1 ENSMUSG00000107739 ENSMUST00000203479 Gm7812 processed_pseudogene Interval_131141 chr5 135393675 135396038 + 0 NA promoter-TSS (ENSMUSG00000053293.9) protein_coding-promoter-TSS (ENSMUSG00000053293.9) -310 ENSMUSG00000053293.9 ENSMUSG00000053293 ENSMUST00000111171 Pom121 protein_coding Interval_130967 chr5 134311773 134315388 + 0 NA intron (ENSMUSG00000060261.15, intron 1 of 5) protein_coding-intron (ENSMUSG00000060261.15, intron 1 of 34) -12874 ENSMUSG00000093311.1 ENSMUSG00000093311 ENSMUST00000175570 Mir3965 miRNA Interval_115085 chr4 89442540 89443333 + 0 NA intron (ENSMUSG00000080808.1, intron 1 of 2) processed_pseudogene-intron (ENSMUSG00000080808.1, intron 1 of 2) 1708 ENSMUSG00000080808.1 ENSMUSG00000080808 ENSMUST00000122013 Gm12608 processed_pseudogene Interval_8087 chr1 135659103 135660412 + 0 NA intron (ENSMUSG00000009418.16, intron 1 of 30) protein_coding-intron (ENSMUSG00000009418.16, intron 1 of 1) -60304 ENSMUSG00000026421.14 ENSMUSG00000026421 ENSMUST00000027677 Csrp1 protein_coding Interval_5790 chr1 91872354 91872866 + 0 NA Intergenic Intergenic -43650 ENSMUSG00000102745.1 ENSMUSG00000102745 ENSMUST00000193764 Gm37600 TEC Interval_46652 chr13 68136373 68136577 + 0 NA Intergenic Intergenic -44819 ENSMUSG00000113342.1 ENSMUSG00000113342 ENSMUST00000221571 AA414992 TEC Interval_78804 chr18 20723401 20723569 + 0 NA intron (ENSMUSG00000056124.5, intron 2 of 8) protein_coding-intron (ENSMUSG00000056124.5, intron 2 of 8) 22919 ENSMUSG00000056124.5 ENSMUSG00000056124 ENSMUST00000070080 B4galt6 protein_coding Interval_145176 chr7 30472355 30472672 + 0 NA intron (ENSMUSG00000006649.17, intron 20 of 28) protein_coding-intron (ENSMUSG00000006649.17, intron 20 of 29) -5352 ENSMUSG00000006649.17 ENSMUSG00000006649 ENSMUST00000131004 Nphs1 protein_coding Interval_6957 chr1 121375015 121375435 + 0 NA Intergenic Intergenic -15325 ENSMUSG00000101791.1 ENSMUSG00000101791 ENSMUST00000190690 2210011K15Rik lincRNA Interval_160125 chr8 106606606 106607172 + 0 NA intron (ENSMUSG00000000303.12, intron 2 of 16) protein_coding-intron (ENSMUSG00000000303.12, intron 2 of 15) 3510 ENSMUSG00000000303.12 ENSMUSG00000000303 ENSMUST00000136580 Cdh1 protein_coding Interval_36150 chr12 36485799 36486324 + 0 NA intron (ENSMUSG00000043153.6, intron 4 of 8) protein_coding-intron (ENSMUSG00000043153.6, intron 5 of 9) -53296 ENSMUSG00000114135.1 ENSMUSG00000114135 ENSMUST00000223284 Gm7252 processed_pseudogene Interval_105613 chr3 88119852 88121219 + 0 NA exon (ENSMUSG00000028068.14, exon 38 of 38) protein_coding-exon (ENSMUSG00000028068.14, exon 38 of 38) 38507 ENSMUSG00000028068.14 ENSMUSG00000028068 ENSMUST00000194772 Iqgap3 protein_coding Interval_100388 chr2 168752650 168753024 + 0 NA intron (ENSMUSG00000027547.17, intron 1 of 2) protein_coding-intron (ENSMUSG00000027547.17, intron 2 of 3) 3106 ENSMUSG00000027547.17 ENSMUSG00000027547 ENSMUST00000130640 Sall4 protein_coding Interval_128088 chr5 110803775 110804692 + 0 NA intron (ENSMUSG00000029512.11, intron 3 of 27) protein_coding-intron (ENSMUSG00000029512.11, intron 3 of 27) 5820 ENSMUSG00000029512.11 ENSMUSG00000029512 ENSMUST00000198470 Ulk1 protein_coding Interval_114986 chr4 88083565 88083936 + 0 NA Intergenic Intergenic -38290 ENSMUSG00000070077.2 ENSMUSG00000070077 ENSMUST00000093569 Mir491 miRNA Interval_105677 chr3 88526164 88526497 + 0 NA exon (ENSMUSG00000103115.1, exon 1 of 1) lincRNA-exon (ENSMUSG00000103115.1, exon 1 of 1) 1025 ENSMUSG00000103115.1 ENSMUSG00000103115 ENSMUST00000193595 Gm37584 lincRNA Interval_32383 chr11 107254802 107255592 + 0 NA intron (ENSMUSG00000040430.18, intron 5 of 7) protein_coding-intron (ENSMUSG00000040430.18, intron 4 of 7) 64103 ENSMUSG00000081360.1 ENSMUSG00000081360 ENSMUST00000119942 Gm11718 processed_pseudogene Interval_74576 chr17 53507793 53508007 + 0 NA TTS (ENSMUSG00000017831.8) protein_coding-TTS (ENSMUSG00000017831.8) -6954 ENSMUSG00000117128.1 ENSMUSG00000117128 ENSMUST00000232747 Gm49915 antisense Interval_14401 chr10 32957649 32958934 + 0 NA Intergenic Intergenic -18606 ENSMUSG00000112469.1 ENSMUSG00000112469 ENSMUST00000218959 Gm47823 lincRNA Interval_145570 chr7 35661907 35662182 + 0 NA Intergenic Intergenic -19000 ENSMUSG00000030417.15 ENSMUSG00000030417 ENSMUST00000130340 Pdcd5 protein_coding Interval_154417 chr8 15984263 15985159 + 0 NA exon (ENSMUSG00000060924.15, exon 49 of 70) protein_coding-exon (ENSMUSG00000060924.15, exon 49 of 70) 107047 ENSMUSG00000109757.1 ENSMUSG00000109757 ENSMUST00000211639 Gm7128 processed_pseudogene Interval_89911 chr2 26397769 26400191 + 0 NA TTS (ENSMUSG00000026925.16) protein_coding-TTS (ENSMUSG00000026925.16) 1496 ENSMUSG00000026925.16 ENSMUSG00000026925 ENSMUST00000144011 Inpp5e protein_coding Interval_95305 chr2 106002629 106003775 + 0 NA promoter-TSS (ENSMUSG00000027166.14) protein_coding-promoter-TSS (ENSMUSG00000027166.14) -1194 ENSMUSG00000027166.14 ENSMUSG00000027166 ENSMUST00000133569 Dnajc24 protein_coding Interval_30700 chr11 95980555 95983410 + 0 NA intron (ENSMUSG00000013415.9, intron 1 of 5) protein_coding-intron (ENSMUSG00000013415.9, intron 2 of 14) 612 ENSMUSG00000013415.9 ENSMUSG00000013415 ENSMUST00000141515 Igf2bp1 protein_coding Interval_68516 chr16 78328094 78328465 + 0 NA promoter-TSS (ENSMUSG00000022865.14) protein_coding-promoter-TSS (ENSMUSG00000022865.14) 3072 ENSMUSG00000022865.14 ENSMUSG00000022865 ENSMUST00000231251 Cxadr protein_coding Interval_123468 chr5 32726037 32726313 + 0 NA intron (ENSMUSG00000082305.4, intron 7 of 18) transcribed_unprocessed_pseudogene-intron (ENSMUSG00000082305.4, intron 6 of 17) 5845 ENSMUSG00000082305.4 ENSMUSG00000082305 ENSMUST00000202224 Gm2420 transcribed_unprocessed_pseudogene Interval_65796 chr16 28906540 28907570 + 0 NA intron (ENSMUSG00000051065.9, intron 1 of 1) protein_coding-intron (ENSMUSG00000051065.9, intron 1 of 1) 44300 ENSMUSG00000116861.1 ENSMUSG00000116861 ENSMUST00000232466 Gm8253 processed_pseudogene Interval_60866 chr15 77233713 77233998 + 0 NA intron (ENSMUSG00000033565.18, intron 1 of 13) protein_coding-intron (ENSMUSG00000033565.18, intron 1 of 12) 8696 ENSMUSG00000089242.1 ENSMUSG00000089242 ENSMUST00000158617 Gm24056 snRNA Interval_13526 chr10 19167281 19168670 + 0 NA intron (ENSMUSG00000111052.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000111052.1, intron 2 of 3) 737 ENSMUSG00000111052.1 ENSMUSG00000111052 ENSMUST00000216683 Gm20139 lincRNA Interval_73473 chr17 37737982 37738534 + 0 NA Intergenic Intergenic -10597 ENSMUSG00000060017.8 ENSMUSG00000060017 ENSMUST00000174675 Olfr121 protein_coding Interval_2748 chr1 44147298 44148780 + 0 NA exon (ENSMUSG00000026048.16, exon 1 of 15) protein_coding-exon (ENSMUSG00000026048.16, exon 1 of 15) 295 ENSMUSG00000026048.16 ENSMUSG00000026048 ENSMUST00000155862 Ercc5 protein_coding Interval_155183 chr8 27249761 27254144 + 0 NA Intergenic Intergenic -1336 ENSMUSG00000031489.15 ENSMUSG00000031489 ENSMUST00000209447 Adrb3 protein_coding Interval_24630 chr11 35444390 35446089 + 0 NA intron (ENSMUSG00000056427.10, intron 2 of 3) protein_coding-intron (ENSMUSG00000056427.10, intron 4 of 35) 95170 ENSMUSG00000086311.1 ENSMUSG00000086311 ENSMUST00000124503 Gm12122 sense_intronic Interval_110512 chr4 3416702 3417196 + 0 NA Intergenic Intergenic 30103 ENSMUSG00000083489.1 ENSMUSG00000083489 ENSMUST00000118568 Gm11784 unprocessed_pseudogene Interval_89409 chr2 20525995 20527117 + 0 NA intron (ENSMUSG00000036617.17, intron 2 of 5) protein_coding-intron (ENSMUSG00000036617.17, intron 2 of 18) 16509 ENSMUSG00000036617.17 ENSMUSG00000036617 ENSMUST00000156587 Etl4 protein_coding Interval_105792 chr3 89356222 89356524 + 0 NA promoter-TSS (ENSMUSG00000042672.15) protein_coding-promoter-TSS (ENSMUSG00000042672.15) -1475 ENSMUSG00000042672.15 ENSMUSG00000042672 ENSMUST00000127766 Dcst1 protein_coding Interval_27228 chr11 64441744 64441980 + 0 NA intron (ENSMUSG00000047759.6, intron 1 of 1) protein_coding-intron (ENSMUSG00000047759.6, intron 1 of 1) 6530 ENSMUSG00000047759.6 ENSMUSG00000047759 ENSMUST00000058652 Hs3st3a1 protein_coding Interval_161994 chr8 124312015 124312234 + 0 NA intron (ENSMUSG00000089704.9, intron 3 of 4) protein_coding-intron (ENSMUSG00000089704.9, intron 3 of 15) -5617 ENSMUSG00000089745.1 ENSMUSG00000089745 ENSMUST00000162325 1810008B01Rik antisense Interval_136816 chr6 60891609 60892009 + 0 NA Intergenic Intergenic -8846 ENSMUSG00000108262.1 ENSMUSG00000108262 ENSMUST00000203860 Gm43867 processed_pseudogene Interval_67477 chr16 49521002 49521201 + 0 NA Intergenic Intergenic 96295 ENSMUSG00000097959.2 ENSMUSG00000097959 ENSMUST00000183137 Gm6931 processed_pseudogene Interval_108556 chr3 128720955 128721450 + 0 NA intron (ENSMUSG00000106245.1, intron 2 of 4) lincRNA-intron (ENSMUSG00000106245.1, intron 2 of 4) -19652 ENSMUSG00000105527.1 ENSMUSG00000105527 ENSMUST00000200511 4933424H11Rik lincRNA Interval_14724 chr10 39393116 39393556 + 0 NA intron (ENSMUSG00000019843.14, intron 1 of 12) protein_coding-intron (ENSMUSG00000019843.14, intron 1 of 13) -26673 ENSMUSG00000019843.14 ENSMUSG00000019843 ENSMUST00000123205 Fyn protein_coding Interval_99587 chr2 163386606 163387712 + 0 NA intron (ENSMUSG00000017817.11, intron 2 of 6) protein_coding-intron (ENSMUSG00000017817.11, intron 1 of 5) 10834 ENSMUSG00000017817.11 ENSMUSG00000017817 ENSMUST00000109425 Jph2 protein_coding Interval_98504 chr2 152830438 152831827 + 0 NA promoter-TSS (ENSMUSG00000007659.18) protein_coding-promoter-TSS (ENSMUSG00000007659.18) -2597 ENSMUSG00000007659.18 ENSMUSG00000007659 ENSMUST00000156688 Bcl2l1 protein_coding Interval_14491 chr10 34297044 34298503 + 0 NA exon (ENSMUSG00000039485.8, exon 1 of 1) protein_coding-exon (ENSMUSG00000039485.8, exon 1 of 1) 1041 ENSMUSG00000097274.2 ENSMUSG00000097274 ENSMUST00000214449 Gm47512 antisense Interval_171051 chr9 113998461 113998698 + 0 NA intron (ENSMUSG00000032507.15, intron 6 of 15) protein_coding-intron (ENSMUSG00000032507.15, intron 5 of 14) -27581 ENSMUSG00000111793.1 ENSMUSG00000111793 ENSMUST00000214534 Gm47950 antisense Interval_171078 chr9 114420271 114421440 + 0 NA intron (ENSMUSG00000045594.10, intron 2 of 14) protein_coding-intron (ENSMUSG00000045594.10, intron 3 of 15) 19747 ENSMUSG00000045594.10 ENSMUSG00000045594 ENSMUST00000217583 Glb1 protein_coding Interval_58253 chr15 31401047 31401539 + 0 NA Intergenic Intergenic 32931 ENSMUSG00000115406.1 ENSMUSG00000115406 ENSMUST00000227460 Gm49300 TEC Interval_45896 chr13 58928090 58928355 + 0 NA intron (ENSMUSG00000055254.15, intron 12 of 17) protein_coding-intron (ENSMUSG00000055254.15, intron 12 of 17) 92407 ENSMUSG00000055254.15 ENSMUSG00000055254 ENSMUST00000223636 Ntrk2 protein_coding Interval_104982 chr3 79487996 79489218 + 0 NA intron (ENSMUSG00000061175.12, intron 12 of 12) protein_coding-intron (ENSMUSG00000061175.12, intron 12 of 16) 43269 ENSMUSG00000061175.12 ENSMUSG00000061175 ENSMUST00000139171 Fnip2 protein_coding Interval_73323 chr17 36205314 36207130 + 0 NA intron (ENSMUSG00000092457.3, intron 1 of 5) unprocessed_pseudogene-intron (ENSMUSG00000092457.3, intron 1 of 5) 117 ENSMUSG00000092457.3 ENSMUSG00000092457 ENSMUST00000173096 Gm8835 unprocessed_pseudogene Interval_122050 chr5 14623531 14623802 + 0 NA intron (ENSMUSG00000061601.15, intron 3 of 22) protein_coding-intron (ENSMUSG00000061601.15, intron 3 of 24) 12014 ENSMUSG00000106411.1 ENSMUSG00000106411 ENSMUST00000196996 Gm42445 TEC Interval_67650 chr16 55476663 55477099 + 0 NA Intergenic Intergenic -17850 ENSMUSG00000093292.1 ENSMUSG00000093292 ENSMUST00000175551 Mir5118 miRNA Interval_3463 chr1 58570000 58571382 + 0 NA intron (ENSMUSG00000038174.14, intron 1 of 11) protein_coding-intron (ENSMUSG00000038174.14, intron 1 of 11) -5471 ENSMUSG00000038174.14 ENSMUSG00000038174 ENSMUST00000159185 Fam126b protein_coding Interval_66667 chr16 35983219 35984502 + 0 NA promoter-TSS (ENSMUSG00000086324.8) antisense-promoter-TSS (ENSMUSG00000086324.8) -2779 ENSMUSG00000086324.8 ENSMUSG00000086324 ENSMUST00000144134 Gm15564 antisense Interval_32828 chr11 111276357 111276745 + 0 NA exon (ENSMUSG00000082272.1, exon 1 of 1) processed_pseudogene-exon (ENSMUSG00000082272.1, exon 1 of 1) 451 ENSMUSG00000082272.1 ENSMUSG00000082272 ENSMUST00000121873 Gm11675 processed_pseudogene Interval_11564 chr1 182756624 182756816 + 0 NA Intergenic Intergenic -7540 ENSMUSG00000043429.7 ENSMUSG00000043429 ENSMUST00000060041 Ccdc185 protein_coding Interval_65930 chr16 30308327 30309957 + 0 NA exon (ENSMUSG00000047953.7, exon 2 of 2) protein_coding-exon (ENSMUSG00000047953.7, exon 2 of 2) 1637 ENSMUSG00000047953.7 ENSMUSG00000047953 ENSMUST00000061190 Gp5 protein_coding Interval_124565 chr5 50971071 50971813 + 0 NA Intergenic Intergenic 50100 ENSMUSG00000105273.1 ENSMUSG00000105273 ENSMUST00000199087 Gm43015 processed_pseudogene Interval_40099 chr12 101145953 101146174 + 0 NA exon (ENSMUSG00000092054.3, exon 1 of 1) transcribed_processed_pseudogene-exon (ENSMUSG00000092054.3, exon 1 of 1) -3044 ENSMUSG00000092054.3 ENSMUSG00000092054 ENSMUST00000185083 Kif4-ps transcribed_processed_pseudogene Interval_3140 chr1 53927555 53927838 + 0 NA intron (ENSMUSG00000042807.15, intron 7 of 28) protein_coding-intron (ENSMUSG00000042807.15, intron 7 of 28) -40755 ENSMUSG00000087949.1 ENSMUSG00000087949 ENSMUST00000157324 Gm24251 snRNA Interval_10633 chr1 172349835 172351064 + 0 NA intron (ENSMUSG00000044708.5, intron 1 of 1) protein_coding-intron (ENSMUSG00000044708.5, intron 1 of 1) 9239 ENSMUSG00000044708.5 ENSMUSG00000044708 ENSMUST00000056136 Kcnj10 protein_coding Interval_174713 chrX 163964712 163965381 + 0 NA Intergenic Intergenic -6494 ENSMUSG00000031370.12 ENSMUSG00000031370 ENSMUST00000127370 Zrsr2 protein_coding Interval_47500 chr13 85734725 85735033 + 0 NA Intergenic Intergenic 130454 ENSMUSG00000114447.1 ENSMUSG00000114447 ENSMUST00000224158 Gm47636 processed_pseudogene Interval_54370 chr14 67990112 67991165 + 0 NA Intergenic Intergenic 60692 ENSMUSG00000114621.1 ENSMUSG00000114621 ENSMUST00000223853 Gm31107 lincRNA Interval_89947 chr2 26643461 26644552 + 0 NA intron (ENSMUSG00000086775.7, intron 1 of 2) antisense-intron (ENSMUSG00000086775.7, intron 3 of 4) 117 ENSMUSG00000086775.7 ENSMUSG00000086775 ENSMUST00000147986 Snhg7os antisense Interval_145568 chr7 35657810 35658469 + 0 NA Intergenic Intergenic -15095 ENSMUSG00000030417.15 ENSMUSG00000030417 ENSMUST00000130340 Pdcd5 protein_coding Interval_146959 chr7 56275934 56276180 + 0 NA intron (ENSMUSG00000030450.11, intron 2 of 3) protein_coding-intron (ENSMUSG00000030450.11, intron 2 of 23) -32907 ENSMUSG00000108773.1 ENSMUSG00000108773 ENSMUST00000206278 Gm44506 antisense Interval_23790 chr11 26274864 26275085 + 0 NA Intergenic Intergenic 62729 ENSMUSG00000065889.1 ENSMUSG00000065889 ENSMUST00000083955 Gm22868 snRNA Interval_92245 chr2 57290448 57290911 + 0 NA intron (ENSMUSG00000026827.12, intron 3 of 16) protein_coding-intron (ENSMUSG00000026827.12, intron 3 of 16) -14993 ENSMUSG00000084292.1 ENSMUSG00000084292 ENSMUST00000118714 Gm13535 processed_pseudogene Interval_141516 chr6 128826815 128827163 + 0 NA promoter-TSS (ENSMUSG00000079298.9) protein_coding-promoter-TSS (ENSMUSG00000079298.9) -699 ENSMUSG00000079298.9 ENSMUSG00000079298 ENSMUST00000174544 Klrb1b protein_coding Interval_147237 chr7 64944324 64945262 + 0 NA intron (ENSMUSG00000030518.17, intron 2 of 9) protein_coding-intron (ENSMUSG00000030518.17, intron 2 of 9) 11783 ENSMUSG00000093212.1 ENSMUSG00000093212 ENSMUST00000175471 Gm25249 miRNA Interval_77083 chr17 86376160 86376784 + 0 NA intron (ENSMUSG00000045038.14, intron 2 of 14) protein_coding-intron (ENSMUSG00000045038.14, intron 3 of 15) -89294 ENSMUSG00000100738.1 ENSMUSG00000100738 ENSMUST00000191222 2010106C02Rik antisense Interval_66444 chr16 33884802 33885273 + 0 NA promoter-TSS (ENSMUSG00000022817.15) protein_coding-promoter-TSS (ENSMUSG00000022817.15) -6904 ENSMUSG00000022817.15 ENSMUSG00000022817 ENSMUST00000231409 Itgb5 protein_coding Interval_111301 chr4 18108892 18109883 + 0 NA intron (ENSMUSG00000028226.15, intron 9 of 11) protein_coding-intron (ENSMUSG00000028226.15, intron 7 of 9) -84144 ENSMUSG00000083150.1 ENSMUSG00000083150 ENSMUST00000120806 Gm11852 processed_pseudogene Interval_106139 chr3 93596963 93597844 + 0 NA Intergenic Intergenic 32349 ENSMUSG00000103406.1 ENSMUSG00000103406 ENSMUST00000193248 Gm5541 unprocessed_pseudogene Interval_28119 chr11 72979843 72980782 + 0 NA exon (ENSMUSG00000020788.15, exon 13 of 22) protein_coding-exon (ENSMUSG00000020788.15, exon 13 of 22) 19143 ENSMUSG00000020788.15 ENSMUSG00000020788 ENSMUST00000135234 Atp2a3 protein_coding Interval_29915 chr11 87720453 87721319 + 0 NA intron (ENSMUSG00000034177.15, intron 3 of 9) protein_coding-intron (ENSMUSG00000034177.15, intron 2 of 8) -16666 ENSMUSG00000020485.14 ENSMUSG00000020485 ENSMUST00000141169 Supt4a protein_coding Interval_148758 chr7 85818200 85818604 + 0 NA Intergenic Intergenic -2217 ENSMUSG00000092307.1 ENSMUSG00000092307 ENSMUST00000173876 Vmn2r-ps76 unprocessed_pseudogene Interval_136395 chr6 54084153 54085631 + 0 NA intron (ENSMUSG00000004633.17, intron 1 of 4) protein_coding-intron (ENSMUSG00000004633.17, intron 1 of 12) 66045 ENSMUSG00000087670.1 ENSMUSG00000087670 ENSMUST00000138767 9530036M11Rik antisense Interval_65598 chr16 23931040 23931780 + 0 NA promoter-TSS (ENSMUSG00000047531.9) protein_coding-promoter-TSS (ENSMUSG00000047531.9) 984 ENSMUSG00000047531.9 ENSMUSG00000047531 ENSMUST00000231038 Rtp2 protein_coding Interval_9074 chr1 153431400 153431790 + 0 NA intron (ENSMUSG00000042708.12, intron 2 of 7) protein_coding-intron (ENSMUSG00000042708.12, intron 2 of 9) -8484 ENSMUSG00000064435.1 ENSMUSG00000064435 ENSMUST00000082501 Gm25588 snoRNA Interval_69371 chr16 92524970 92525262 + 0 NA intron (ENSMUSG00000022949.9, intron 1 of 5) protein_coding-intron (ENSMUSG00000022949.9, intron 1 of 5) 28027 ENSMUSG00000116709.1 ENSMUSG00000116709 ENSMUST00000232213 Gm49722 lincRNA Interval_91218 chr2 36007833 36008495 + 0 NA Intergenic Intergenic 41242 ENSMUSG00000026895.7 ENSMUSG00000026895 ENSMUST00000070112 Ndufa8 protein_coding Interval_122866 chr5 26491003 26492093 + 0 NA intron (ENSMUSG00000029044.9, intron 1 of 4) lincRNA-intron (ENSMUSG00000029044.9, intron 1 of 3) 1741 ENSMUSG00000029044.9 ENSMUSG00000029044 ENSMUST00000196508 4930584F24Rik lincRNA Interval_84059 chr19 7008872 7009155 + 0 NA intron (ENSMUSG00000024965.9, intron 6 of 13) protein_coding-intron (ENSMUSG00000024965.9, intron 6 of 14) 10332 ENSMUSG00000024965.9 ENSMUSG00000024965 ENSMUST00000238171 Fermt3 protein_coding Interval_38946 chr12 84028501 84029523 + 0 NA Intergenic Intergenic 5204 ENSMUSG00000113844.1 ENSMUSG00000113844 ENSMUST00000221543 Gm47943 processed_pseudogene Interval_66535 chr16 34946237 34946488 + 0 NA intron (ENSMUSG00000116665.1, intron 2 of 3) protein_coding-intron (ENSMUSG00000022836.11, intron 18 of 31) -7033 ENSMUSG00000100593.1 ENSMUSG00000100593 ENSMUST00000187558 1700119H24Rik antisense Interval_29301 chr11 82773282 82774322 + 0 NA Intergenic Intergenic 7240 ENSMUSG00000085175.7 ENSMUSG00000085175 ENSMUST00000136051 Gm11423 antisense Interval_106687 chr3 98889042 98889448 + 0 NA intron (ENSMUSG00000027870.8, intron 1 of 8) protein_coding-intron (ENSMUSG00000027870.8, intron 1 of 8) 3994 ENSMUSG00000027870.8 ENSMUSG00000027870 ENSMUST00000029464 Hao2 protein_coding Interval_51172 chr14 24445936 24446520 + 0 NA intron (ENSMUSG00000114575.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000114575.1, intron 1 of 2) 175 ENSMUSG00000114575.1 ENSMUSG00000114575 ENSMUST00000224174 Gm47814 lincRNA Interval_171938 chr9 122746714 122747709 + 0 NA promoter-TSS (ENSMUSG00000094985.2) protein_coding-promoter-TSS (ENSMUSG00000094985.2) -3392 ENSMUSG00000094985.2 ENSMUSG00000094985 ENSMUST00000213519 Topaz1 protein_coding Interval_25395 chr11 47372039 47372246 + 0 NA intron (ENSMUSG00000020354.15, intron 2 of 2) protein_coding-intron (ENSMUSG00000020354.15, intron 1 of 7) -169290 ENSMUSG00000082792.1 ENSMUSG00000082792 ENSMUST00000121420 Gm12176 processed_pseudogene Interval_27500 chr11 68262881 68263565 + 0 NA intron (ENSMUSG00000020902.12, intron 4 of 7) protein_coding-intron (ENSMUSG00000020902.12, intron 3 of 6) 7656 ENSMUSG00000084993.1 ENSMUSG00000084993 ENSMUST00000151817 Gm12305 sense_intronic Interval_109409 chr3 141961625 141961929 + 0 NA intron (ENSMUSG00000052430.15, intron 2 of 11) protein_coding-intron (ENSMUSG00000052430.15, intron 1 of 10) -30269 ENSMUSG00000052430.15 ENSMUSG00000052430 ENSMUST00000106230 Bmpr1b protein_coding Interval_46949 chr13 73658852 73659321 + 0 NA Intergenic Intergenic 10901 ENSMUSG00000021611.9 ENSMUSG00000021611 ENSMUST00000223325 Tert protein_coding Interval_129493 chr5 120535827 120536346 + 0 NA exon (ENSMUSG00000032741.9, exon 28 of 28) protein_coding-exon (ENSMUSG00000032741.9, exon 28 of 28) 16953 ENSMUSG00000106825.1 ENSMUSG00000106825 ENSMUST00000201971 2510016D11Rik TEC Interval_14559 chr10 35634426 35634758 + 0 NA Intergenic Intergenic 77300 ENSMUSG00000063953.3 ENSMUSG00000063953 ENSMUST00000080898 Amd2 protein_coding Interval_48706 chr13 101751580 101752532 + 0 NA promoter-TSS (ENSMUSG00000104214.1) TEC-promoter-TSS (ENSMUSG00000104214.1) -168 ENSMUSG00000104214.1 ENSMUSG00000104214 ENSMUST00000192073 Gm36638 TEC Interval_58647 chr15 36792181 36794521 + 0 NA promoter-TSS (ENSMUSG00000022285.17) protein_coding-promoter-TSS (ENSMUSG00000022285.17) 3578 ENSMUSG00000022285.17 ENSMUSG00000022285 ENSMUST00000227067 Ywhaz protein_coding Interval_133762 chr6 11898741 11899022 + 0 NA Intergenic Intergenic 8602 ENSMUSG00000029632.7 ENSMUSG00000029632 ENSMUST00000204714 Ndufa4 protein_coding Interval_18004 chr10 81317102 81317599 + 0 NA exon (ENSMUSG00000034902.17, exon 18 of 19) protein_coding-exon (ENSMUSG00000034902.17, exon 18 of 19) -6152 ENSMUSG00000034889.8 ENSMUSG00000034889 ENSMUST00000219285 Cactin protein_coding Interval_171633 chr9 119706485 119707326 + 0 NA intron (ENSMUSG00000034533.10, intron 1 of 27) protein_coding-intron (ENSMUSG00000034533.10, intron 1 of 27) -18866 ENSMUSG00000034533.10 ENSMUSG00000034533 ENSMUST00000213401 Scn10a protein_coding Interval_62009 chr15 85859255 85860382 + 0 NA promoter-TSS (ENSMUSG00000022385.11) protein_coding-promoter-TSS (ENSMUSG00000022385.11) -128 ENSMUSG00000022385.11 ENSMUSG00000022385 ENSMUST00000231074 Gtse1 protein_coding Interval_56795 chr14 122130911 122132110 + 0 NA intron (ENSMUSG00000025544.13, intron 3 of 12) protein_coding-intron (ENSMUSG00000025544.13, intron 3 of 16) 9957 ENSMUSG00000090674.1 ENSMUSG00000090674 ENSMUST00000166043 Gm17082 processed_pseudogene Interval_161440 chr8 120470704 120472081 + 0 NA intron (ENSMUSG00000031822.20, intron 2 of 2) protein_coding-intron (ENSMUSG00000092329.1, intron 1 of 15) -27843 ENSMUSG00000080549.2 ENSMUSG00000080549 ENSMUST00000116899 Gm22715 miRNA Interval_108631 chr3 129661075 129661802 + 0 NA Intergenic Intergenic 22803 ENSMUSG00000092701.1 ENSMUSG00000092701 ENSMUST00000174960 Gm24515 miRNA Interval_23853 chr11 27131402 27131612 + 0 NA Intergenic Intergenic -44372 ENSMUSG00000088654.1 ENSMUSG00000088654 ENSMUST00000158029 Gm24850 snoRNA Interval_29245 chr11 82193431 82193670 + 0 NA intron (ENSMUSG00000020702.13, intron 9 of 10) protein_coding-intron (ENSMUSG00000020702.13, intron 9 of 10) 78365 ENSMUSG00000009185.2 ENSMUSG00000009185 ENSMUST00000009329 Ccl8 protein_coding Interval_166504 chr9 60181976 60182670 + 0 NA intron (ENSMUSG00000032289.15, intron 6 of 16) protein_coding-intron (ENSMUSG00000032289.15, intron 7 of 17) -140144 ENSMUSG00000088090.1 ENSMUSG00000088090 ENSMUST00000157465 Gm23668 rRNA Interval_147391 chr7 66401540 66401751 + 0 NA TTS (ENSMUSG00000015134.15) protein_coding-TTS (ENSMUSG00000015134.15) 17590 ENSMUSG00000015134.15 ENSMUSG00000015134 ENSMUST00000174215 Aldh1a3 protein_coding Interval_143417 chr7 6575723 6576307 + 0 NA Intergenic Intergenic 11174 ENSMUSG00000056696.5 ENSMUSG00000056696 ENSMUST00000070985 Olfr1350 protein_coding Interval_112078 chr4 34429259 34430522 + 0 NA Intergenic Intergenic -4406 ENSMUSG00000087758.1 ENSMUSG00000087758 ENSMUST00000157133 Gm23466 misc_RNA Interval_125092 chr5 64381910 64382938 + 0 NA Intergenic Intergenic -1030 ENSMUSG00000105443.1 ENSMUSG00000105443 ENSMUST00000200306 Gm43837 lincRNA Interval_161108 chr8 117503301 117504331 + 0 NA intron (ENSMUSG00000034330.10, intron 1 of 32) protein_coding-intron (ENSMUSG00000034330.10, intron 1 of 32) 5525 ENSMUSG00000034330.10 ENSMUSG00000034330 ENSMUST00000081232 Plcg2 protein_coding Interval_143767 chr7 16198310 16198767 + 0 NA intron (ENSMUSG00000006019.15, intron 16 of 16) protein_coding-intron (ENSMUSG00000006019.15, intron 16 of 16) 20792 ENSMUSG00000041420.18 ENSMUSG00000041420 ENSMUST00000176714 Meis3 protein_coding Interval_96742 chr2 127607379 127609454 + 0 NA Intergenic Intergenic 17975 ENSMUSG00000027374.12 ENSMUSG00000027374 ENSMUST00000129066 Mrps5 protein_coding Interval_17145 chr10 72631600 72632775 + 0 NA Intergenic Intergenic -24057 ENSMUSG00000019923.14 ENSMUSG00000019923 ENSMUST00000219352 Zwint protein_coding Interval_73723 chr17 42990069 42991915 + 0 NA Intergenic Intergenic -25576 ENSMUSG00000023915.5 ENSMUSG00000023915 ENSMUST00000233482 Tnfrsf21 protein_coding Interval_101377 chr2 180902185 180902815 + 0 NA Intergenic Intergenic 8395 ENSMUSG00000098051.1 ENSMUSG00000098051 ENSMUST00000183124 Gm27032 lincRNA Interval_38899 chr12 83687137 83689059 + 0 NA promoter-TSS (ENSMUSG00000019969.14) protein_coding-promoter-TSS (ENSMUSG00000019969.14) -90 ENSMUSG00000019969.14 ENSMUSG00000019969 ENSMUST00000221072 Psen1 protein_coding Interval_156350 chr8 47611631 47612316 + 0 NA Intergenic Intergenic 16127 ENSMUSG00000109960.1 ENSMUSG00000109960 ENSMUST00000210283 Gm45575 processed_pseudogene Interval_7123 chr1 126674685 126675822 + 0 NA intron (ENSMUSG00000049690.15, intron 2 of 2) protein_coding-intron (ENSMUSG00000049690.15, intron 2 of 12) -182511 ENSMUSG00000049690.15 ENSMUSG00000049690 ENSMUST00000162647 Nckap5 protein_coding Interval_115043 chr4 88805823 88806222 + 0 NA exon (ENSMUSG00000070908.1, exon 1 of 1) protein_coding-exon (ENSMUSG00000070908.1, exon 1 of 1) 491 ENSMUSG00000070908.1 ENSMUSG00000070908 ENSMUST00000094977 Gm13288 protein_coding Interval_86192 chr19 37686343 37687948 + 0 NA exon (ENSMUSG00000062432.4, exon 3 of 6) protein_coding-exon (ENSMUSG00000062432.4, exon 3 of 6) 1564 ENSMUSG00000062432.4 ENSMUSG00000062432 ENSMUST00000073391 Cyp26c1 protein_coding Interval_125776 chr5 74065462 74066242 + 0 NA promoter-TSS (ENSMUSG00000054814.14) protein_coding-promoter-TSS (ENSMUSG00000054814.14) 5814 ENSMUSG00000106973.1 ENSMUSG00000106973 ENSMUST00000201934 Gm43415 TEC Interval_41796 chr12 119392264 119392634 + 0 NA promoter-TSS (ENSMUSG00000041886.7) protein_coding-promoter-TSS (ENSMUSG00000041886.7) 39931 ENSMUSG00000113192.1 ENSMUSG00000113192 ENSMUST00000222541 Gm18032 processed_pseudogene Interval_42901 chr13 21233616 21234622 + 0 NA Intergenic Intergenic -46563 ENSMUSG00000113104.1 ENSMUSG00000113104 ENSMUST00000220690 Gm47806 antisense Interval_161283 chr8 119487772 119489089 + 0 NA intron (ENSMUSG00000034224.14, intron 4 of 6) protein_coding-intron (ENSMUSG00000034224.14, intron 6 of 10) 12864 ENSMUSG00000034224.14 ENSMUSG00000034224 ENSMUST00000133821 Slc38a8 protein_coding Interval_10971 chr1 177686779 177687060 + 0 NA Intergenic Intergenic -42895 ENSMUSG00000015962.5 ENSMUSG00000015962 ENSMUST00000016106 1700016C15Rik protein_coding Interval_12324 chr1 191752054 191752428 + 0 NA intron (ENSMUSG00000026623.16, intron 3 of 4) protein_coding-intron (ENSMUSG00000026623.16, intron 3 of 7) 10062 ENSMUSG00000095504.1 ENSMUSG00000095504 ENSMUST00000180108 Gm22446 snRNA Interval_164665 chr9 40422838 40423204 + 0 NA intron (ENSMUSG00000040111.17, intron 1 of 20) protein_coding-intron (ENSMUSG00000040111.17, intron 1 of 19) -56119 ENSMUSG00000110928.1 ENSMUSG00000110928 ENSMUST00000214407 Gm48114 TEC Interval_145985 chr7 42853771 42854230 + 0 NA intron (ENSMUSG00000092225.1, intron 1 of 3) protein_coding-intron (ENSMUSG00000092225.1, intron 1 of 3) 13234 ENSMUSG00000092225.1 ENSMUSG00000092225 ENSMUST00000174558 Gm2381 protein_coding Interval_59056 chr15 42664452 42664800 + 0 NA intron (ENSMUSG00000022309.9, intron 1 of 1) protein_coding-intron (ENSMUSG00000022309.9, intron 1 of 8) -11699 ENSMUSG00000097805.2 ENSMUSG00000097805 ENSMUST00000228544 Gm17473 antisense Interval_30404 chr11 94162845 94163778 + 0 NA Intergenic Intergenic 29809 ENSMUSG00000086003.7 ENSMUSG00000086003 ENSMUST00000125406 B230206L02Rik processed_transcript Interval_17329 chr10 75910536 75911228 + 0 NA intron (ENSMUSG00000000902.13, intron 2 of 2) protein_coding-intron (ENSMUSG00000000902.13, intron 4 of 8) 4282 ENSMUSG00000000902.13 ENSMUSG00000000902 ENSMUST00000146555 Smarcb1 protein_coding Interval_162513 chr9 3486505 3486880 + 0 NA Intergenic Intergenic 10771 ENSMUSG00000110660.1 ENSMUSG00000110660 ENSMUST00000211968 Gm5362 processed_pseudogene Interval_117133 chr4 119854091 119854845 + 0 NA intron (ENSMUSG00000028634.17, intron 1 of 1) protein_coding-intron (ENSMUSG00000028634.17, intron 1 of 8) -178298 ENSMUSG00000028634.17 ENSMUSG00000028634 ENSMUST00000166542 Hivep3 protein_coding Interval_45318 chr13 54322424 54323456 + 0 NA intron (ENSMUSG00000113404.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000113404.1, intron 1 of 1) 4940 ENSMUSG00000113404.1 ENSMUSG00000113404 ENSMUST00000220818 Gm48622 lincRNA Interval_101824 chr3 9718437 9719222 + 0 NA intron (ENSMUSG00000027508.15, intron 3 of 8) protein_coding-intron (ENSMUSG00000027508.15, intron 2 of 7) -38778 ENSMUSG00000089794.1 ENSMUSG00000089794 ENSMUST00000160368 Gm16337 lincRNA Interval_93213 chr2 71191695 71192780 + 0 NA Intergenic Intergenic -19767 ENSMUSG00000027012.15 ENSMUSG00000027012 ENSMUST00000138613 Dync1i2 protein_coding Interval_84508 chr19 11965015 11966490 + 0 NA promoter-TSS (ENSMUSG00000024687.11) protein_coding-promoter-TSS (ENSMUSG00000024687.11) -189 ENSMUSG00000024687.11 ENSMUSG00000024687 ENSMUST00000025590 Osbp protein_coding Interval_119832 chr4 140313110 140313344 + 0 NA Intergenic Intergenic 10075 ENSMUSG00000103107.1 ENSMUSG00000103107 ENSMUST00000192212 Gm9867 TEC Interval_37522 chr12 69555831 69557059 + 0 NA Intergenic Intergenic 4892 ENSMUSG00000095776.1 ENSMUSG00000095776 ENSMUST00000177928 Gm23018 miRNA Interval_145525 chr7 35365241 35365834 + 0 NA intron (ENSMUSG00000030494.13, intron 4 of 15) protein_coding-intron (ENSMUSG00000030494.13, intron 4 of 14) -17028 ENSMUSG00000030494.13 ENSMUSG00000030494 ENSMUST00000187997 Rhpn2 protein_coding Interval_6240 chr1 103854027 103854699 + 0 NA Intergenic Intergenic 130018 ENSMUSG00000102325.1 ENSMUSG00000102325 ENSMUST00000192862 Gm37789 TEC Interval_36084 chr12 35356043 35356593 + 0 NA Intergenic Intergenic 47427 ENSMUSG00000105488.1 ENSMUSG00000105488 ENSMUST00000199843 Gm44396 miRNA Interval_162640 chr9 7161277 7161818 + 0 NA intron (ENSMUSG00000047193.16, intron 12 of 89) protein_coding-intron (ENSMUSG00000047193.16, intron 12 of 88) -41938 ENSMUSG00000032002.10 ENSMUSG00000032002 ENSMUST00000216770 Dcun1d5 protein_coding Interval_8772 chr1 150849737 150850011 + 0 NA intron (ENSMUSG00000066842.18, intron 4 of 105) protein_coding-intron (ENSMUSG00000066842.18, intron 4 of 106) -151166 ENSMUSG00000099622.1 ENSMUSG00000099622 ENSMUST00000191173 Gm29188 lincRNA Interval_75224 chr17 64908368 64908570 + 0 NA Intergenic Intergenic 32268 ENSMUSG00000117203.1 ENSMUSG00000117203 ENSMUST00000233516 Gm4701 processed_pseudogene Interval_100037 chr2 166686858 166687371 + 0 NA intron (ENSMUSG00000039621.13, intron 1 of 2) protein_coding-intron (ENSMUSG00000039621.13, intron 1 of 39) 5040 ENSMUSG00000089145.1 ENSMUSG00000089145 ENSMUST00000158520 Gm25265 misc_RNA Interval_23748 chr11 25773524 25773813 + 0 NA intron (ENSMUSG00000032985.15, intron 2 of 6) protein_coding-intron (ENSMUSG00000032985.15, intron 2 of 6) -4527 ENSMUSG00000032985.15 ENSMUSG00000032985 ENSMUST00000125987 5730522E02Rik protein_coding Interval_26826 chr11 60886721 60887891 + 0 NA Intergenic Intergenic -8268 ENSMUSG00000043284.12 ENSMUSG00000043284 ENSMUST00000155031 Tmem11 protein_coding Interval_150300 chr7 109453925 109454174 + 0 NA intron (ENSMUSG00000031026.15, intron 19 of 19) protein_coding-intron (ENSMUSG00000031026.15, intron 19 of 19) -14968 ENSMUSG00000031027.15 ENSMUSG00000031027 ENSMUST00000121378 Stk33 protein_coding Interval_130028 chr5 123788823 123789602 + 0 NA intron (ENSMUSG00000029414.11, intron 2 of 2) protein_coding-intron (ENSMUSG00000029414.11, intron 37 of 63) 39496 ENSMUSG00000029414.11 ENSMUSG00000029414 ENSMUST00000197002 Kntc1 protein_coding Interval_67712 chr16 56166501 56166837 + 0 NA intron (ENSMUSG00000052917.15, intron 13 of 23) protein_coding-intron (ENSMUSG00000052917.15, intron 12 of 22) -17107 ENSMUSG00000116826.1 ENSMUSG00000116826 ENSMUST00000231653 Gm49682 processed_pseudogene Interval_59298 chr15 50888239 50890748 + 0 NA promoter-TSS (ENSMUSG00000084458.1) miRNA-promoter-TSS (ENSMUSG00000084458.1) -379 ENSMUSG00000084458.1 ENSMUSG00000084458 ENSMUST00000122509 Mir1907 miRNA Interval_36826 chr12 54414672 54414952 + 0 NA Intergenic Intergenic -13265 ENSMUSG00000112204.1 ENSMUSG00000112204 ENSMUST00000219134 Gm47553 processed_pseudogene Interval_116140 chr4 108065640 108065970 + 0 NA intron (ENSMUSG00000028603.15, intron 6 of 9) protein_coding-intron (ENSMUSG00000028603.15, intron 12 of 15) -21552 ENSMUSG00000098980.1 ENSMUSG00000098980 ENSMUST00000183919 Mir6397 miRNA Interval_147602 chr7 68985476 68986252 + 0 NA Intergenic Intergenic -3540 ENSMUSG00000109524.1 ENSMUSG00000109524 ENSMUST00000207562 Gm44691 lincRNA Interval_17927 chr10 80863187 80863606 + 0 NA promoter-TSS (ENSMUSG00000035206.10) protein_coding-promoter-TSS (ENSMUSG00000035206.10) 6275 ENSMUSG00000035206.10 ENSMUSG00000035206 ENSMUST00000219136 Sppl2b protein_coding Interval_165495 chr9 48678858 48679221 + 0 NA intron (ENSMUSG00000066687.5, intron 4 of 6) protein_coding-intron (ENSMUSG00000066687.5, intron 4 of 6) -81664 ENSMUSG00000032271.13 ENSMUSG00000032271 ENSMUST00000128076 Nnmt protein_coding Interval_140384 chr6 117716104 117717262 + 0 NA exon (ENSMUSG00000104222.1, exon 1 of 1) lincRNA-exon (ENSMUSG00000104222.1, exon 1 of 1) 210 ENSMUSG00000104222.1 ENSMUSG00000104222 ENSMUST00000195277 Gm7292 lincRNA Interval_7128 chr1 126817654 126817874 + 0 NA intron (ENSMUSG00000049690.15, intron 1 of 2) protein_coding-intron (ENSMUSG00000049690.15, intron 1 of 12) 58851 ENSMUSG00000101600.1 ENSMUSG00000101600 ENSMUST00000188266 4930599A14Rik lincRNA Interval_137816 chr6 82728760 82729651 + 0 NA intron (ENSMUSG00000000628.10, intron 16 of 17) protein_coding-intron (ENSMUSG00000000628.10, intron 16 of 17) -23840 ENSMUSG00000030042.15 ENSMUSG00000030042 ENSMUST00000140281 Pole4 protein_coding Interval_124062 chr5 37937132 37938268 + 0 NA Intergenic Intergenic 43350 ENSMUSG00000106718.1 ENSMUSG00000106718 ENSMUST00000201327 Gm20052 lincRNA Interval_167326 chr9 67400522 67400806 + 0 NA intron (ENSMUSG00000052698.15, intron 3 of 58) protein_coding-intron (ENSMUSG00000052698.15, intron 2 of 57) -23839 ENSMUSG00000111412.1 ENSMUSG00000111412 ENSMUST00000216972 Gm47047 antisense Interval_102570 chr3 27905220 27905558 + 0 NA Intergenic Intergenic -9021 ENSMUSG00000043164.3 ENSMUSG00000043164 ENSMUST00000058077 Tmem212 protein_coding Interval_52707 chr14 48795116 48795592 + 0 NA intron (ENSMUSG00000098682.8, intron 3 of 3) lincRNA-intron (ENSMUSG00000098682.8, intron 3 of 3) -19067 ENSMUSG00000115130.1 ENSMUSG00000115130 ENSMUST00000226916 Gm49152 TEC Interval_149705 chr7 100813070 100813280 + 0 NA TTS (ENSMUSG00000029461.17) protein_coding-TTS (ENSMUSG00000029461.17) 1823 ENSMUSG00000109109.1 ENSMUSG00000109109 ENSMUST00000208745 Gm44953 TEC Interval_32211 chr11 106192900 106194182 + 0 NA promoter-TSS (ENSMUSG00000069631.14) protein_coding-promoter-TSS (ENSMUSG00000069631.14) -2 ENSMUSG00000069631.14 ENSMUSG00000069631 ENSMUST00000106867 Strada protein_coding Interval_154103 chr8 12705076 12705297 + 0 NA Intergenic Intergenic 13941 ENSMUSG00000074469.6 ENSMUSG00000074469 ENSMUST00000151188 Gm15348 lincRNA Interval_155131 chr8 26883969 26884386 + 0 NA exon (ENSMUSG00000100335.2, exon 1 of 2) lincRNA-exon (ENSMUSG00000100335.2, exon 1 of 2) -1482 ENSMUSG00000100335.2 ENSMUSG00000100335 ENSMUST00000210263 2310008N11Rik lincRNA Interval_8627 chr1 144686929 144687213 + 0 NA Intergenic Intergenic -77961 ENSMUSG00000088096.1 ENSMUSG00000088096 ENSMUST00000157471 Gm23672 snRNA Interval_109301 chr3 138776250 138776956 + 0 NA intron (ENSMUSG00000028152.10, intron 1 of 3) protein_coding-intron (ENSMUSG00000028152.10, intron 1 of 7) 33834 ENSMUSG00000028152.10 ENSMUSG00000028152 ENSMUST00000121826 Tspan5 protein_coding Interval_127461 chr5 104104158 104105287 + 0 NA intron (ENSMUSG00000029309.7, intron 1 of 4) protein_coding-intron (ENSMUSG00000029309.7, intron 1 of 10) -4569 ENSMUSG00000097877.2 ENSMUSG00000097877 ENSMUST00000181506 Gm26703 antisense Interval_53194 chr14 55047495 55050315 + 0 NA Intergenic Intergenic -5042 ENSMUSG00000093452.4 ENSMUSG00000093452 ENSMUST00000183750 Zfhx2os antisense Interval_152300 chr7 131566192 131567118 + 0 NA intron (ENSMUSG00000066979.6, intron 3 of 5) protein_coding-intron (ENSMUSG00000066979.6, intron 5 of 7) 6248 ENSMUSG00000066979.6 ENSMUSG00000066979 ENSMUST00000207442 Bub3 protein_coding Interval_147699 chr7 72216742 72217328 + 0 NA intron (ENSMUSG00000032776.9, intron 8 of 22) protein_coding-intron (ENSMUSG00000032776.9, intron 8 of 22) 12325 ENSMUSG00000032776.9 ENSMUSG00000032776 ENSMUST00000206755 Mctp2 protein_coding Interval_118252 chr4 129827892 129828140 + 0 NA intron (ENSMUSG00000028788.14, intron 1 of 5) protein_coding-intron (ENSMUSG00000028788.14, intron 1 of 5) 7308 ENSMUSG00000028788.14 ENSMUSG00000028788 ENSMUST00000141754 Ptp4a2 protein_coding Interval_8165 chr1 136198996 136199441 + 0 NA intron (ENSMUSG00000087230.10, intron 10 of 22) protein_coding-intron (ENSMUSG00000087230.10, intron 1 of 5) 13610 ENSMUSG00000087230.10 ENSMUSG00000087230 ENSMUST00000166708 Mroh3 protein_coding Interval_152044 chr7 128535050 128535365 + 0 NA intron (ENSMUSG00000030847.8, intron 1 of 3) protein_coding-intron (ENSMUSG00000030847.8, intron 1 of 3) -3725 ENSMUSG00000108614.1 ENSMUSG00000108614 ENSMUST00000206512 2610306O10Rik TEC Interval_4259 chr1 72216847 72217457 + 0 NA Intergenic Intergenic -4845 ENSMUSG00000039395.8 ENSMUSG00000039395 ENSMUST00000048860 Mreg protein_coding Interval_116102 chr4 107683062 107684159 + 0 NA promoter-TSS (ENSMUSG00000028610.16) protein_coding-promoter-TSS (ENSMUSG00000028610.16) -30 ENSMUSG00000028610.16 ENSMUSG00000028610 ENSMUST00000131508 Dmrtb1 protein_coding Interval_23852 chr11 27096204 27096745 + 0 NA Intergenic Intergenic -9339 ENSMUSG00000088654.1 ENSMUSG00000088654 ENSMUST00000158029 Gm24850 snoRNA Interval_136701 chr6 58127755 58127950 + 0 NA Intergenic Intergenic -8033 ENSMUSG00000093708.1 ENSMUSG00000093708 ENSMUST00000176058 Gm20718 processed_pseudogene Interval_54993 chr14 76724552 76725644 + 0 NA Intergenic Intergenic -35033 ENSMUSG00000115709.1 ENSMUSG00000115709 ENSMUST00000228541 4930431P22Rik lincRNA Interval_127334 chr5 103142206 103142467 + 0 NA intron (ENSMUSG00000046709.18, intron 2 of 13) protein_coding-intron (ENSMUSG00000046709.18, intron 2 of 13) 68998 ENSMUSG00000046709.18 ENSMUSG00000046709 ENSMUST00000136595 Mapk10 protein_coding Interval_141871 chr6 135039802 135041074 + 0 NA Intergenic Intergenic -25213 ENSMUSG00000046733.7 ENSMUSG00000046733 ENSMUST00000050104 Gprc5a protein_coding Interval_102308 chr3 21654964 21656129 + 0 NA Intergenic Intergenic 7159 ENSMUSG00000106460.1 ENSMUSG00000106460 ENSMUST00000196649 Gm17935 processed_pseudogene Interval_111083 chr4 11734896 11735771 + 0 NA Intergenic Intergenic -22860 ENSMUSG00000028217.11 ENSMUSG00000028217 ENSMUST00000108303 Cdh17 protein_coding Interval_154204 chr8 13413103 13414243 + 0 NA intron (ENSMUSG00000031450.8, intron 4 of 5) protein_coding-intron (ENSMUSG00000031450.8, intron 5 of 6) 8567 ENSMUSG00000031450.8 ENSMUSG00000031450 ENSMUST00000211027 Grk1 protein_coding Interval_32247 chr11 106481646 106481878 + 0 NA intron (ENSMUSG00000020715.9, intron 1 of 14) protein_coding-intron (ENSMUSG00000020715.9, intron 1 of 21) 6090 ENSMUSG00000020715.9 ENSMUSG00000020715 ENSMUST00000106799 Ern1 protein_coding Interval_20132 chr10 115175301 115176102 + 0 NA promoter-TSS (ENSMUSG00000006764.8) protein_coding-promoter-TSS (ENSMUSG00000006764.8) -143 ENSMUSG00000006764.8 ENSMUSG00000006764 ENSMUST00000155794 Tph2 protein_coding Interval_73559 chr17 40455259 40457885 + 0 NA Intergenic Intergenic 2878 ENSMUSG00000117302.1 ENSMUSG00000117302 ENSMUST00000233044 Gm34266 processed_pseudogene Interval_49554 chr13 112926959 112928121 + 0 NA promoter-TSS (ENSMUSG00000016018.4) protein_coding-promoter-TSS (ENSMUSG00000016018.4) -168 ENSMUSG00000016018.4 ENSMUSG00000016018 ENSMUST00000225037 Mtrex protein_coding Interval_19952 chr10 111485141 111485863 + 0 NA exon (ENSMUSG00000058799.16, exon 3 of 16) protein_coding-exon (ENSMUSG00000058799.16, exon 3 of 16) 4009 ENSMUSG00000087819.1 ENSMUSG00000087819 ENSMUST00000157194 Gm25117 snoRNA Interval_35858 chr12 31271996 31272217 + 0 NA intron (ENSMUSG00000002900.17, intron 3 of 32) protein_coding-intron (ENSMUSG00000002900.17, intron 3 of 32) 6812 ENSMUSG00000002900.17 ENSMUSG00000002900 ENSMUST00000172134 Lamb1 protein_coding Interval_131331 chr5 136522629 136523722 + 0 NA intron (ENSMUSG00000029705.17, intron 1 of 1) protein_coding-intron (ENSMUSG00000029705.17, intron 1 of 23) 13302 ENSMUSG00000104369.1 ENSMUSG00000104369 ENSMUST00000192800 Gm38082 TEC Interval_98205 chr2 149865142 149866568 + 0 NA intron (ENSMUSG00000074736.10, intron 2 of 2) protein_coding-intron (ENSMUSG00000074736.10, intron 1 of 4) -34213 ENSMUSG00000074737.2 ENSMUSG00000074737 ENSMUST00000099264 C530025M09Rik antisense Interval_19796 chr10 109083449 109084076 + 0 NA Intergenic Intergenic 6513 ENSMUSG00000088554.1 ENSMUSG00000088554 ENSMUST00000157929 Gm22097 misc_RNA Interval_65920 chr16 30251944 30252707 + 0 NA Intergenic Intergenic -2827 ENSMUSG00000116938.1 ENSMUSG00000116938 ENSMUST00000231234 Gm49645 processed_pseudogene Interval_170223 chr9 106298507 106298723 + 0 NA intron (ENSMUSG00000023345.17, intron 7 of 10) protein_coding-intron (ENSMUSG00000023345.17, intron 7 of 10) 17005 ENSMUSG00000023345.17 ENSMUSG00000023345 ENSMUST00000186366 Poc1a protein_coding Interval_173505 chrX 96415449 96415705 + 0 NA intron (ENSMUSG00000045802.13, intron 1 of 10) protein_coding-intron (ENSMUSG00000045802.13, intron 1 of 10) -40851 ENSMUSG00000031209.14 ENSMUSG00000031209 ENSMUST00000135212 Heph protein_coding Interval_96361 chr2 121975098 121976090 + 0 NA intron (ENSMUSG00000033411.16, intron 2 of 12) protein_coding-intron (ENSMUSG00000033411.16, intron 2 of 12) 19114 ENSMUSG00000033411.16 ENSMUSG00000033411 ENSMUST00000127265 Ctdspl2 protein_coding Interval_33519 chr11 117001630 117002233 + 0 NA Intergenic Intergenic 38257 ENSMUSG00000086902.7 ENSMUSG00000086902 ENSMUST00000152401 Gm11728 lincRNA Interval_40368 chr12 104440099 104440981 + 0 NA Intergenic Intergenic -21140 ENSMUSG00000077398.1 ENSMUSG00000077398 ENSMUST00000104210 Gm24334 snoRNA Interval_89284 chr2 18852224 18853084 + 0 NA intron (ENSMUSG00000026737.12, intron 4 of 4) protein_coding-intron (ENSMUSG00000026737.12, intron 7 of 9) -50836 ENSMUSG00000097638.1 ENSMUSG00000097638 ENSMUST00000181515 Carlr protein_coding Interval_22011 chr11 5768806 5769319 + 0 NA exon (ENSMUSG00000083844.8, exon 3 of 7) transcribed_unprocessed_pseudogene-exon (ENSMUSG00000083844.8, exon 3 of 7) -6686 ENSMUSG00000049680.17 ENSMUSG00000049680 ENSMUST00000140922 Urgcp protein_coding Interval_4909 chr1 82357384 82358066 + 0 NA intron (ENSMUSG00000026142.15, intron 3 of 6) protein_coding-intron (ENSMUSG00000026142.15, intron 3 of 6) 5508 ENSMUSG00000104493.1 ENSMUSG00000104493 ENSMUST00000194744 Gm19552 TEC Interval_101541 chr3 4743811 4745168 + 0 NA Intergenic Intergenic -21609 ENSMUSG00000103306.1 ENSMUSG00000103306 ENSMUST00000194754 Gm37801 processed_pseudogene Interval_131374 chr5 136779665 136780979 + 0 NA intron (ENSMUSG00000004415.15, intron 3 of 3) protein_coding-intron (ENSMUSG00000004415.15, intron 3 of 12) 57987 ENSMUSG00000004415.15 ENSMUSG00000004415 ENSMUST00000140245 Col26a1 protein_coding Interval_14841 chr10 40402252 40402762 + 0 NA intron (ENSMUSG00000038481.13, intron 2 of 11) protein_coding-intron (ENSMUSG00000038481.13, intron 2 of 12) -52404 ENSMUSG00000038491.9 ENSMUSG00000038491 ENSMUST00000044774 Cdk19os antisense Interval_54792 chr14 75124865 75125925 + 0 NA intron (ENSMUSG00000021997.4, intron 3 of 9) protein_coding-intron (ENSMUSG00000021997.4, intron 3 of 9) 5486 ENSMUSG00000021997.4 ENSMUSG00000021997 ENSMUST00000022574 Lrrc63 protein_coding Interval_53175 chr14 54919749 54921022 + 0 NA exon (ENSMUSG00000022203.7, exon 4 of 6) protein_coding-exon (ENSMUSG00000022203.7, exon 4 of 6) 5270 ENSMUSG00000022203.7 ENSMUSG00000022203 ENSMUST00000227587 Efs protein_coding Interval_66786 chr16 37627702 37628533 + 0 NA intron (ENSMUSG00000022821.13, intron 2 of 2) protein_coding-intron (ENSMUSG00000022821.13, intron 11 of 12) 26249 ENSMUSG00000022820.4 ENSMUSG00000022820 ENSMUST00000231881 Ndufb4 protein_coding Interval_87371 chr19 47988179 47988902 + 0 NA exon (ENSMUSG00000046585.9, exon 15 of 18) protein_coding-exon (ENSMUSG00000046585.9, exon 15 of 18) 50865 ENSMUSG00000046585.9 ENSMUSG00000046585 ENSMUST00000066308 Cfap58 protein_coding Interval_129204 chr5 118171293 118172640 + 0 NA intron (ENSMUSG00000046607.6, intron 1 of 1) protein_coding-intron (ENSMUSG00000046607.6, intron 1 of 1) 7318 ENSMUSG00000046607.6 ENSMUSG00000046607 ENSMUST00000054836 Hrk protein_coding Interval_38791 chr12 82357081 82357824 + 0 NA intron (ENSMUSG00000042700.16, intron 4 of 21) protein_coding-intron (ENSMUSG00000042700.16, intron 3 of 20) 139085 ENSMUSG00000094374.2 ENSMUSG00000094374 ENSMUST00000179295 Gm5435 processed_pseudogene Interval_4993 chr1 83819451 83819679 + 0 NA intron (ENSMUSG00000100580.6, intron 2 of 4) lincRNA-intron (ENSMUSG00000100580.6, intron 2 of 4) 23653 ENSMUSG00000094946.1 ENSMUSG00000094946 ENSMUST00000178653 Gm25754 miRNA Interval_57512 chr15 12007585 12008932 + 0 NA Intergenic Intergenic -12508 ENSMUSG00000022205.15 ENSMUSG00000022205 ENSMUST00000134414 Sub1 protein_coding Interval_9722 chr1 161274110 161274624 + 0 NA Intergenic Intergenic -23205 ENSMUSG00000026701.15 ENSMUSG00000026701 ENSMUST00000130867 Prdx6 protein_coding Interval_136971 chr6 65150786 65151346 + 0 NA promoter-TSS (ENSMUSG00000107968.1) processed_pseudogene-promoter-TSS (ENSMUSG00000107968.1) 69 ENSMUSG00000107968.1 ENSMUSG00000107968 ENSMUST00000203338 Gm44419 processed_pseudogene Interval_131177 chr5 135622980 135624450 + 0 NA Intergenic Intergenic -6416 ENSMUSG00000107029.1 ENSMUSG00000107029 ENSMUST00000201893 Gm43123 TEC Interval_53450 chr14 57589449 57589695 + 0 NA intron (ENSMUSG00000021952.16, intron 18 of 22) protein_coding-intron (ENSMUSG00000021952.16, intron 18 of 22) 17958 ENSMUSG00000097933.2 ENSMUSG00000097933 ENSMUST00000180397 1700039M10Rik bidirectional_promoter_lncRNA Interval_13035 chr10 9793864 9794068 + 0 NA intron (ENSMUSG00000019790.17, intron 18 of 25) protein_coding-intron (ENSMUSG00000019790.17, intron 18 of 27) 25619 ENSMUSG00000019790.17 ENSMUSG00000019790 ENSMUST00000219200 Stxbp5 protein_coding Interval_12090 chr1 189675531 189675769 + 0 NA intron (ENSMUSG00000026605.14, intron 7 of 17) protein_coding-intron (ENSMUSG00000026605.14, intron 7 of 11) -4508 ENSMUSG00000026605.14 ENSMUSG00000026605 ENSMUST00000194165 Cenpf protein_coding Interval_55497 chr14 89147200 89147417 + 0 NA Intergenic Intergenic -203717 ENSMUSG00000102164.1 ENSMUSG00000102164 ENSMUST00000192706 Gm36946 TEC Interval_53505 chr14 57910550 57910889 + 0 NA Intergenic Intergenic 9213 ENSMUSG00000021973.9 ENSMUSG00000021973 ENSMUST00000225116 Micu2 protein_coding Interval_129869 chr5 122823818 122824160 + 0 NA Intergenic Intergenic -2695 ENSMUSG00000029472.13 ENSMUSG00000029472 ENSMUST00000197331 Anapc5 protein_coding Interval_54681 chr14 73253404 73255688 + 0 NA intron (ENSMUSG00000022105.6, intron 17 of 26) protein_coding-intron (ENSMUSG00000022105.6, intron 17 of 26) -14760 ENSMUSG00000022105.6 ENSMUSG00000022105 ENSMUST00000164624 Rb1 protein_coding Interval_96314 chr2 121547951 121549582 + 0 NA TTS (ENSMUSG00000027238.17) protein_coding-TTS (ENSMUSG00000027238.17) 2585 ENSMUSG00000027238.17 ENSMUSG00000027238 ENSMUST00000153704 Frmd5 protein_coding Interval_128 GL456370.1 18795 19261 + 0 NA NA NA NA NA Interval_8535 chr1 140941991 140942244 + 0 NA Intergenic Intergenic 118790 ENSMUSG00000102500.1 ENSMUSG00000102500 ENSMUST00000194837 Gm37371 TEC Interval_149296 chr7 97081163 97082879 + 0 NA intron (ENSMUSG00000004508.6, intron 1 of 9) protein_coding-intron (ENSMUSG00000004508.6, intron 1 of 9) 245 ENSMUSG00000004508.6 ENSMUSG00000004508 ENSMUST00000206791 Gab2 protein_coding Interval_130544 chr5 128703956 128704802 + 0 NA intron (ENSMUSG00000029423.10, intron 1 of 13) protein_coding-intron (ENSMUSG00000029423.10, intron 1 of 13) 1855 ENSMUSG00000029423.10 ENSMUSG00000029423 ENSMUST00000195959 Piwil1 protein_coding Interval_22575 chr11 11881107 11882444 + 0 NA intron (ENSMUSG00000020182.16, intron 1 of 14) protein_coding-intron (ENSMUSG00000020182.16, intron 1 of 14) 13652 ENSMUSG00000086391.1 ENSMUSG00000086391 ENSMUST00000151032 1700042O10Rik antisense Interval_12027 chr1 188946784 188948475 + 0 NA intron (ENSMUSG00000026609.15, intron 65 of 70) protein_coding-intron (ENSMUSG00000026609.15, intron 65 of 70) 60212 ENSMUSG00000026608.13 ENSMUSG00000026608 ENSMUST00000193273 Kctd3 protein_coding Interval_28829 chr11 78585589 78586636 + 0 NA promoter-TSS (ENSMUSG00000082110.1) processed_pseudogene-promoter-TSS (ENSMUSG00000082110.1) -557 ENSMUSG00000082110.1 ENSMUSG00000082110 ENSMUST00000119052 Gm11196 processed_pseudogene Interval_114635 chr4 83337800 83338008 + 0 NA Intergenic Intergenic -45160 ENSMUSG00000087592.1 ENSMUSG00000087592 ENSMUST00000126437 Gm11184 lincRNA Interval_82399 chr18 73703089 73704476 + 0 NA promoter-TSS (ENSMUSG00000024515.13) protein_coding-promoter-TSS (ENSMUSG00000024515.13) -7546 ENSMUSG00000117985.1 ENSMUSG00000117985 ENSMUST00000237598 Gm32548 lincRNA Interval_27475 chr11 68113848 68115083 + 0 NA intron (ENSMUSG00000020903.13, intron 6 of 6) protein_coding-intron (ENSMUSG00000020903.13, intron 7 of 7) -18501 ENSMUSG00000083924.1 ENSMUSG00000083924 ENSMUST00000120312 Gm12304 processed_pseudogene Interval_40107 chr12 101344745 101345209 + 0 NA intron (ENSMUSG00000113134.2, intron 14 of 21) transcribed_unprocessed_pseudogene-intron (ENSMUSG00000113134.2, intron 2 of 9) -59676 ENSMUSG00000047014.7 ENSMUSG00000047014 ENSMUST00000220820 Catsperb protein_coding Interval_60046 chr15 64209284 64209806 + 0 NA intron (ENSMUSG00000022377.16, intron 2 of 4) protein_coding-intron (ENSMUSG00000022377.16, intron 3 of 30) -85739 ENSMUSG00000022377.16 ENSMUSG00000022377 ENSMUST00000175963 Asap1 protein_coding Interval_114273 chr4 70395627 70396174 + 0 NA intron (ENSMUSG00000039298.16, intron 3 of 36) protein_coding-intron (ENSMUSG00000039298.16, intron 3 of 33) 14543 ENSMUSG00000039298.16 ENSMUSG00000039298 ENSMUST00000126416 Cdk5rap2 protein_coding Interval_112214 chr4 35989540 35991421 + 0 NA intron (ENSMUSG00000045083.14, intron 1 of 2) protein_coding-intron (ENSMUSG00000045083.14, intron 2 of 2) 13699 ENSMUSG00000082169.1 ENSMUSG00000082169 ENSMUST00000121343 Gm12369 processed_pseudogene Interval_57932 chr15 25590840 25591236 + 0 NA intron (ENSMUSG00000115204.1, intron 1 of 5) lincRNA-intron (ENSMUSG00000115204.1, intron 1 of 5) 2053 ENSMUSG00000115204.1 ENSMUSG00000115204 ENSMUST00000228618 Gm36642 lincRNA Interval_158486 chr8 84004464 84005305 + 0 NA promoter-TSS (ENSMUSG00000098823.1) miRNA-promoter-TSS (ENSMUSG00000098823.1) -744 ENSMUSG00000098823.1 ENSMUSG00000098823 ENSMUST00000184463 Mir8111 miRNA Interval_40373 chr12 104471151 104473497 + 0 NA intron (ENSMUSG00000021095.5, intron 1 of 2) protein_coding-intron (ENSMUSG00000021095.5, intron 1 of 2) 1006 ENSMUSG00000021095.5 ENSMUSG00000021095 ENSMUST00000021513 Gsc protein_coding Interval_163420 chr9 21375325 21375762 + 0 NA intron (ENSMUSG00000032178.14, intron 1 of 20) protein_coding-intron (ENSMUSG00000032178.14, intron 1 of 19) -6359 ENSMUSG00000110915.1 ENSMUSG00000110915 ENSMUST00000217490 Gm36198 antisense Interval_4772 chr1 78531939 78532621 + 0 NA intron (ENSMUSG00000012187.13, intron 6 of 6) protein_coding-intron (ENSMUSG00000012187.13, intron 5 of 5) 20468 ENSMUSG00000012187.13 ENSMUSG00000012187 ENSMUST00000125458 Mogat1 protein_coding Interval_87618 chr19 53752775 53753462 + 0 NA intron (ENSMUSG00000043639.15, intron 1 of 13) protein_coding-intron (ENSMUSG00000043639.15, intron 1 of 13) 15192 ENSMUSG00000089807.1 ENSMUSG00000089807 ENSMUST00000161107 Gm16298 processed_pseudogene Interval_65601 chr16 23962462 23962847 + 0 NA Intergenic Intergenic 9726 ENSMUSG00000022508.5 ENSMUSG00000022508 ENSMUST00000135352 Bcl6 protein_coding Interval_70018 chr17 4592312 4592616 + 0 NA Intergenic Intergenic -42514 ENSMUSG00000116767.1 ENSMUSG00000116767 ENSMUST00000232624 4930517M08Rik lincRNA Interval_45964 chr13 59682618 59682937 + 0 NA Intergenic Intergenic -5594 ENSMUSG00000114727.1 ENSMUSG00000114727 ENSMUST00000225788 Gm47269 processed_pseudogene Interval_147674 chr7 71582060 71582409 + 0 NA Intergenic Intergenic 106213 ENSMUSG00000108978.1 ENSMUSG00000108978 ENSMUST00000208786 Gm44689 lincRNA Interval_97361 chr2 135438779 135440894 + 0 NA intron (ENSMUSG00000051177.16, intron 32 of 32) protein_coding-intron (ENSMUSG00000051177.16, intron 31 of 31) 143748 ENSMUSG00000085631.1 ENSMUSG00000085631 ENSMUST00000129868 9630028H03Rik antisense Interval_99931 chr2 165980964 165983633 + 0 NA intron (ENSMUSG00000084816.1, intron 2 of 5) lincRNA-intron (ENSMUSG00000084816.1, intron 2 of 5) 3626 ENSMUSG00000084816.1 ENSMUSG00000084816 ENSMUST00000130022 Platr29 lincRNA Interval_49749 chr13 114458213 114459633 + 0 NA promoter-TSS (ENSMUSG00000021765.9) protein_coding-promoter-TSS (ENSMUSG00000021765.9) 260 ENSMUSG00000114935.1 ENSMUSG00000114935 ENSMUST00000225706 Gm47040 antisense Interval_125918 chr5 75754288 75754623 + 0 NA intron (ENSMUSG00000106726.1, intron 2 of 2) lincRNA-intron (ENSMUSG00000106726.1, intron 2 of 2) 4431 ENSMUSG00000106726.1 ENSMUSG00000106726 ENSMUST00000202985 Gm43100 lincRNA Interval_33124 chr11 114610683 114612509 + 0 NA Intergenic Intergenic -53012 ENSMUSG00000083769.1 ENSMUSG00000083769 ENSMUST00000120766 Gm11689 processed_pseudogene Interval_24719 chr11 36152309 36153280 + 0 NA intron (ENSMUSG00000049336.16, intron 9 of 28) protein_coding-intron (ENSMUSG00000049336.16, intron 9 of 28) 72130 ENSMUSG00000087245.1 ENSMUSG00000087245 ENSMUST00000147717 Gm12126 antisense Interval_159162 chr8 91276297 91276665 + 0 NA TTS (ENSMUSG00000033282.14) protein_coding-TTS (ENSMUSG00000033282.14) 5025 ENSMUSG00000033282.14 ENSMUSG00000033282 ENSMUST00000132757 Rpgrip1l protein_coding Interval_66882 chr16 38330523 38331182 + 0 NA intron (ENSMUSG00000022805.17, intron 6 of 8) protein_coding-intron (ENSMUSG00000022805.17, intron 6 of 16) 10960 ENSMUSG00000022805.17 ENSMUSG00000022805 ENSMUST00000114740 Maats1 protein_coding Interval_153983 chr8 11627837 11629490 + 0 NA intron (ENSMUSG00000031508.14, intron 2 of 5) protein_coding-intron (ENSMUSG00000031508.14, intron 2 of 5) -4037 ENSMUSG00000031508.14 ENSMUSG00000031508 ENSMUST00000210876 Ankrd10 protein_coding Interval_121277 chr4 154660950 154661890 + 0 NA Intergenic Intergenic -6102 ENSMUSG00000086810.1 ENSMUSG00000086810 ENSMUST00000138077 Gm13110 processed_transcript Interval_92050 chr2 52887848 52888774 + 0 NA intron (ENSMUSG00000036053.17, intron 1 of 26) protein_coding-intron (ENSMUSG00000036053.17, intron 1 of 26) 30451 ENSMUSG00000036053.17 ENSMUSG00000036053 ENSMUST00000050719 Fmnl2 protein_coding Interval_58864 chr15 39333102 39335201 + 0 NA intron (ENSMUSG00000037386.16, intron 2 of 25) protein_coding-intron (ENSMUSG00000037386.16, intron 2 of 26) -25573 ENSMUSG00000095297.1 ENSMUSG00000095297 ENSMUST00000102078 Gm25381 miRNA Interval_111698 chr4 26221360 26221678 + 0 NA Intergenic Intergenic 125372 ENSMUSG00000040520.7 ENSMUSG00000040520 ENSMUST00000153813 Manea protein_coding Interval_127859 chr5 108302987 108303572 + 0 NA Intergenic Intergenic -9330 ENSMUSG00000029263.15 ENSMUSG00000029263 ENSMUST00000118910 Pigg protein_coding Interval_87181 chr19 46670599 46671320 + 0 NA exon (ENSMUSG00000003555.8, exon 2 of 8) protein_coding-exon (ENSMUSG00000003555.8, exon 2 of 8) 2213 ENSMUSG00000003555.8 ENSMUSG00000003555 ENSMUST00000156577 Cyp17a1 protein_coding Interval_7648 chr1 132801926 132802599 + 0 NA Intergenic Intergenic 12086 ENSMUSG00000088911.1 ENSMUSG00000088911 ENSMUST00000158286 Gm22609 snoRNA Interval_130711 chr5 129941224 129942718 + 0 NA promoter-TSS (ENSMUSG00000066735.8) protein_coding-promoter-TSS (ENSMUSG00000066735.8) -3609 ENSMUSG00000107118.1 ENSMUSG00000107118 ENSMUST00000201618 Gm42986 TEC Interval_75976 chr17 74032826 74033053 + 0 NA intron (ENSMUSG00000117038.1, intron 3 of 3) protein_coding-intron (ENSMUSG00000038541.8, intron 1 of 4) 14977 ENSMUSG00000038541.8 ENSMUSG00000038541 ENSMUST00000043458 Srd5a2 protein_coding Interval_81521 chr18 61360767 61362084 + 0 NA intron (ENSMUSG00000033871.14, intron 1 of 11) protein_coding-intron (ENSMUSG00000033871.14, intron 2 of 12) -36388 ENSMUSG00000093026.1 ENSMUSG00000093026 ENSMUST00000175285 Gm25301 miRNA Interval_100669 chr2 170997215 170997453 + 0 NA Intergenic Intergenic -42510 ENSMUSG00000080955.1 ENSMUSG00000080955 ENSMUST00000117955 Gm14263 processed_pseudogene Interval_139931 chr6 112867637 112868031 + 0 NA intron (ENSMUSG00000030257.16, intron 1 of 21) protein_coding-intron (ENSMUSG00000030257.16, intron 1 of 9) -38375 ENSMUSG00000030257.16 ENSMUSG00000030257 ENSMUST00000143475 Srgap3 protein_coding Interval_158949 chr8 88179968 88180373 + 0 NA Intergenic Intergenic 5610 ENSMUSG00000062704.3 ENSMUSG00000062704 ENSMUST00000185395 9430002A10Rik lincRNA Interval_68463 chr16 77251461 77251679 + 0 NA intron (ENSMUSG00000090386.10, intron 2 of 3) processed_transcript-intron (ENSMUSG00000090386.10, intron 2 of 6) 53990 ENSMUSG00000102289.1 ENSMUSG00000102289 ENSMUST00000194532 Gm31258 TEC Interval_11591 chr1 183052741 183053155 + 0 NA Intergenic Intergenic -21658 ENSMUSG00000094807.2 ENSMUSG00000094807 ENSMUST00000178492 Gm24975 miRNA Interval_153632 chr8 4134382 4135033 + 0 NA promoter-TSS (ENSMUSG00000079168.4) protein_coding-promoter-TSS (ENSMUSG00000079168.4) 609 ENSMUSG00000079168.4 ENSMUSG00000079168 ENSMUST00000130372 Cd209g protein_coding Interval_88599 chr2 6505447 6507216 + 0 NA Intergenic Intergenic 26641 ENSMUSG00000102599.1 ENSMUSG00000102599 ENSMUST00000194293 Gm38386 TEC Interval_71785 chr17 26080573 26080932 + 0 NA TTS (ENSMUSG00000036775.13) protein_coding-TTS (ENSMUSG00000036775.13) 7606 ENSMUSG00000118105.1 ENSMUSG00000118105 ENSMUST00000237108 Gm17814 processed_pseudogene Interval_53278 chr14 55745086 55747320 + 0 NA promoter-TSS (ENSMUSG00000002332.16) protein_coding-promoter-TSS (ENSMUSG00000002332.16) -3023 ENSMUSG00000019297.9 ENSMUSG00000019297 ENSMUST00000227300 Nop9 protein_coding Interval_97715 chr2 143158566 143158771 + 0 NA Intergenic Intergenic -7038 ENSMUSG00000083047.1 ENSMUSG00000083047 ENSMUST00000118582 Gm14082 processed_pseudogene Interval_155871 chr8 40510905 40512423 + 0 NA promoter-TSS (ENSMUSG00000031601.16) protein_coding-promoter-TSS (ENSMUSG00000031601.16) -360 ENSMUSG00000031601.16 ENSMUSG00000031601 ENSMUST00000139558 Cnot7 protein_coding Interval_108901 chr3 133142483 133142688 + 0 NA intron (ENSMUSG00000040969.14, intron 7 of 13) protein_coding-intron (ENSMUSG00000040969.14, intron 7 of 13) 42198 ENSMUSG00000028016.9 ENSMUSG00000028016 ENSMUST00000160669 Ints12 protein_coding Interval_11400 chr1 181627134 181627810 + 0 NA intron (ENSMUSG00000047369.17, intron 17 of 84) protein_coding-intron (ENSMUSG00000047369.17, intron 17 of 83) 45519 ENSMUSG00000047369.17 ENSMUSG00000047369 ENSMUST00000195808 Dnah14 protein_coding Interval_94863 chr2 98143629 98143890 + 0 NA Intergenic Intergenic -147644 ENSMUSG00000080802.1 ENSMUSG00000080802 ENSMUST00000119552 Gm13804 processed_pseudogene Interval_112560 chr4 43146018 43147502 + 0 NA intron (ENSMUSG00000028456.18, intron 1 of 6) protein_coding-intron (ENSMUSG00000028456.18, intron 7 of 38) -10132 ENSMUSG00000077552.1 ENSMUSG00000077552 ENSMUST00000104364 Gm23709 snoRNA Interval_87813 chr19 56167013 56167794 + 0 NA Intergenic Intergenic 61093 ENSMUSG00000117695.1 ENSMUSG00000117695 ENSMUST00000238174 Gm31912 lincRNA Interval_83793 chr19 4743688 4743919 + 0 NA exon (ENSMUSG00000096370.8, exon 3 of 3) protein_coding-exon (ENSMUSG00000096370.8, exon 3 of 3) -13102 ENSMUSG00000033760.17 ENSMUSG00000033760 ENSMUST00000183332 Rbm4b protein_coding Interval_39997 chr12 100359031 100359225 + 0 NA intron (ENSMUSG00000033530.8, intron 15 of 20) protein_coding-intron (ENSMUSG00000033530.8, intron 15 of 19) 10624 ENSMUSG00000113917.1 ENSMUSG00000113917 ENSMUST00000220812 Gm48382 TEC Interval_132628 chr5 146829489 146829862 + 0 NA Intergenic Intergenic -3471 ENSMUSG00000041453.12 ENSMUSG00000041453 ENSMUST00000135345 Rpl21 protein_coding Interval_149619 chr7 100088554 100089006 + 0 NA intron (ENSMUSG00000030726.16, intron 6 of 7) protein_coding-intron (ENSMUSG00000030726.16, intron 10 of 11) 12680 ENSMUSG00000030726.16 ENSMUSG00000030726 ENSMUST00000156202 Pold3 protein_coding Interval_171450 chr9 118426415 118427182 + 0 NA Intergenic Intergenic -3038 ENSMUSG00000111843.1 ENSMUSG00000111843 ENSMUST00000213675 4933432G23Rik lincRNA Interval_103324 chr3 38803486 38803944 + 0 NA Intergenic Intergenic 84544 ENSMUSG00000086181.1 ENSMUSG00000086181 ENSMUST00000153659 C230034O21Rik antisense Interval_103156 chr3 36065434 36066712 + 0 NA promoter-TSS (ENSMUSG00000027710.14) protein_coding-promoter-TSS (ENSMUSG00000027710.14) -12526 ENSMUSG00000047696.16 ENSMUSG00000047696 ENSMUST00000196964 Ccdc144b protein_coding Interval_10606 chr1 172186033 172187014 + 0 NA promoter-TSS (ENSMUSG00000026554.15) protein_coding-promoter-TSS (ENSMUSG00000026554.15) 20174 ENSMUSG00000013698.12 ENSMUSG00000013698 ENSMUST00000152432 Pea15a protein_coding Interval_4715 chr1 77512854 77516756 + 0 NA promoter-TSS (ENSMUSG00000101849.1) lincRNA-promoter-TSS (ENSMUSG00000101849.1) 274 ENSMUSG00000026235.14 ENSMUSG00000026235 ENSMUST00000186930 Epha4 protein_coding Interval_159283 chr8 92771496 92772966 + 0 NA Intergenic Intergenic -55256 ENSMUSG00000078967.5 ENSMUSG00000078967 ENSMUST00000181181 Gapdh-ps16 processed_pseudogene Interval_68157 chr16 66003279 66004773 + 0 NA Intergenic Intergenic 42801 ENSMUSG00000088181.1 ENSMUSG00000088181 ENSMUST00000157556 Gm22217 misc_RNA Interval_40536 chr12 105570427 105570765 + 0 NA intron (ENSMUSG00000021070.6, intron 1 of 2) protein_coding-intron (ENSMUSG00000021070.6, intron 1 of 2) 7370 ENSMUSG00000021070.6 ENSMUSG00000021070 ENSMUST00000001652 Bdkrb2 protein_coding Interval_8771 chr1 150824571 150824859 + 0 NA intron (ENSMUSG00000066842.18, intron 4 of 105) protein_coding-intron (ENSMUSG00000066842.18, intron 4 of 106) -176325 ENSMUSG00000099622.1 ENSMUSG00000099622 ENSMUST00000191173 Gm29188 lincRNA Interval_49692 chr13 114028044 114028294 + 0 NA intron (ENSMUSG00000042348.10, intron 5 of 5) protein_coding-intron (ENSMUSG00000042348.10, intron 4 of 4) 92247 ENSMUSG00000114696.1 ENSMUSG00000114696 ENSMUST00000223997 Gm47479 TEC Interval_120614 chr4 149702502 149703152 + 0 NA promoter-TSS (ENSMUSG00000039936.18) protein_coding-promoter-TSS (ENSMUSG00000039936.18) -28633 ENSMUSG00000039936.18 ENSMUSG00000039936 ENSMUST00000124510 Pik3cd protein_coding Interval_125654 chr5 73066973 73067197 + 0 NA intron (ENSMUSG00000070733.13, intron 3 of 20) protein_coding-intron (ENSMUSG00000070733.13, intron 42 of 59) -21931 ENSMUSG00000107171.1 ENSMUSG00000107171 ENSMUST00000202292 Gm42572 TEC Interval_46969 chr13 73818126 73819236 + 0 NA exon (ENSMUSG00000021567.15, exon 10 of 10) protein_coding-exon (ENSMUSG00000021567.15, exon 10 of 10) -11251 ENSMUSG00000066714.6 ENSMUSG00000066714 ENSMUST00000139696 Gm8062 processed_pseudogene Interval_164540 chr9 38125356 38126391 + 0 NA Intergenic Intergenic 10675 ENSMUSG00000096356.3 ENSMUSG00000096356 ENSMUST00000072290 Olfr889 protein_coding Interval_77926 chr18 5635565 5636161 + 0 NA intron (ENSMUSG00000024238.15, intron 2 of 2) protein_coding-intron (ENSMUSG00000024238.15, intron 1 of 7) 21390 ENSMUSG00000080543.1 ENSMUSG00000080543 ENSMUST00000116893 Gm22709 miRNA Interval_85688 chr19 29674185 29674570 + 0 NA Intergenic Intergenic -23557 ENSMUSG00000024806.4 ENSMUSG00000024806 ENSMUST00000235954 Mlana protein_coding Interval_144717 chr7 27735496 27737380 + 0 NA promoter-TSS (ENSMUSG00000037640.15) protein_coding-promoter-TSS (ENSMUSG00000037640.15) -518 ENSMUSG00000037640.15 ENSMUSG00000037640 ENSMUST00000167955 Zfp60 protein_coding Interval_169980 chr9 103391791 103392177 + 0 NA Intergenic Intergenic -17185 ENSMUSG00000101419.1 ENSMUSG00000101419 ENSMUST00000188687 Gm29600 processed_pseudogene Interval_80135 chr18 37781545 37782846 + 0 NA intron (ENSMUSG00000102428.1, intron 1 of 3) protein_coding-intron (ENSMUSG00000103088.1, intron 1 of 3) 16422 ENSMUSG00000102428.1 ENSMUSG00000102428 ENSMUST00000193045 Pcdhga12 protein_coding Interval_51062 chr14 21877518 21878096 + 0 NA intron (ENSMUSG00000114352.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000114352.1, intron 1 of 1) 11959 ENSMUSG00000114352.1 ENSMUSG00000114352 ENSMUST00000224374 4931407E12Rik lincRNA Interval_21508 chr10 128995541 128995841 + 0 NA Intergenic Intergenic 6260 ENSMUSG00000069430.3 ENSMUSG00000069430 ENSMUST00000091996 Olfr9 protein_coding Interval_69338 chr16 92319465 92320386 + 0 NA exon (ENSMUSG00000051728.7, exon 1 of 1) protein_coding-exon (ENSMUSG00000051728.7, exon 1 of 1) 1516 ENSMUSG00000051728.7 ENSMUSG00000051728 ENSMUST00000062638 Fam243 protein_coding Interval_148627 chr7 83567502 83568478 + 0 NA Intergenic Intergenic -17734 ENSMUSG00000094841.2 ENSMUSG00000094841 ENSMUST00000208877 Gm10610 lincRNA Interval_88774 chr2 10527428 10528269 + 0 NA intron (ENSMUSG00000061186.15, intron 12 of 22) protein_coding-intron (ENSMUSG00000061186.15, intron 11 of 22) 9693 ENSMUSG00000080594.1 ENSMUSG00000080594 ENSMUST00000116944 Mir669h miRNA Interval_174666 chrX 162740295 162741045 + 0 NA Intergenic Intergenic -4057 ENSMUSG00000086034.1 ENSMUSG00000086034 ENSMUST00000136472 Gm15201 processed_transcript Interval_110954 chr4 10833716 10834460 + 0 NA Intergenic Intergenic 11542 ENSMUSG00000092880.1 ENSMUSG00000092880 ENSMUST00000175139 Mir3471-1 miRNA Interval_134613 chr6 29984456 29985766 + 0 NA promoter-TSS (ENSMUSG00000045709.11) transcribed_unitary_pseudogene-promoter-TSS (ENSMUSG00000045709.11) -961 ENSMUSG00000045709.11 ENSMUSG00000045709 ENSMUST00000238228 Smkr-ps transcribed_unitary_pseudogene Interval_90663 chr2 31763013 31763601 + 0 NA intron (ENSMUSG00000026842.16, intron 1 of 2) protein_coding-intron (ENSMUSG00000026842.16, intron 1 of 10) 47273 ENSMUSG00000043102.2 ENSMUSG00000043102 ENSMUST00000057407 Qrfp protein_coding Interval_84167 chr19 8104144 8104559 + 0 NA intron (ENSMUSG00000063590.3, intron 4 of 9) protein_coding-intron (ENSMUSG00000063590.3, intron 4 of 9) 27631 ENSMUSG00000063590.3 ENSMUSG00000063590 ENSMUST00000065651 Slc22a28 protein_coding Interval_62848 chr15 97396154 97397293 + 0 NA Intergenic Intergenic 35521 ENSMUSG00000044250.8 ENSMUSG00000044250 ENSMUST00000226495 Pced1b protein_coding Interval_125684 chr5 73229903 73230808 + 0 NA intron (ENSMUSG00000070733.13, intron 1 of 11) protein_coding-intron (ENSMUSG00000070733.13, intron 1 of 62) -17712 ENSMUSG00000090561.2 ENSMUSG00000090561 ENSMUST00000168686 Gm17207 sense_intronic Interval_138753 chr6 91644757 91645072 + 0 NA Intergenic Intergenic 34309 ENSMUSG00000108751.1 ENSMUSG00000108751 ENSMUST00000206576 Gm45217 TEC Interval_142181 chr6 137923305 137923564 + 0 NA Intergenic Intergenic -3463 ENSMUSG00000094466.1 ENSMUSG00000094466 ENSMUST00000177773 Gm24308 miRNA Interval_53645 chr14 60545677 60546306 + 0 NA intron (ENSMUSG00000101797.1, intron 2 of 2) lincRNA-intron (ENSMUSG00000101797.1, intron 2 of 2) 50911 ENSMUSG00000114408.1 ENSMUSG00000114408 ENSMUST00000224210 Gm47810 processed_pseudogene Interval_138376 chr6 87730434 87733239 + 0 NA promoter-TSS (ENSMUSG00000068263.11) protein_coding-promoter-TSS (ENSMUSG00000068263.11) -688 ENSMUSG00000108079.1 ENSMUSG00000108079 ENSMUST00000205253 Gm44210 antisense Interval_153446 chr7 144851105 144851905 + 0 NA intron (ENSMUSG00000050917.5, intron 1 of 2) protein_coding-intron (ENSMUSG00000050917.5, intron 1 of 2) 4138 ENSMUSG00000050917.5 ENSMUSG00000050917 ENSMUST00000060336 Fgf4 protein_coding Interval_8459 chr1 139546067 139546846 + 0 NA TTS (ENSMUSG00000057037.8) protein_coding-TTS (ENSMUSG00000057037.8) 7143 ENSMUSG00000057037.8 ENSMUSG00000057037 ENSMUST00000161224 Cfhr1 protein_coding Interval_68307 chr16 72924316 72925026 + 0 NA intron (ENSMUSG00000022883.11, intron 3 of 28) protein_coding-intron (ENSMUSG00000022883.11, intron 3 of 28) -51678 ENSMUSG00000022883.11 ENSMUSG00000022883 ENSMUST00000232432 Robo1 protein_coding Interval_237 KZ289068.1 259601 260329 + 0 NA NA NA NA NA Interval_21231 chr10 127336961 127337933 + 0 NA promoter-TSS (ENSMUSG00000025407.7) protein_coding-promoter-TSS (ENSMUSG00000025407.7) -392 ENSMUSG00000025407.7 ENSMUSG00000025407 ENSMUST00000218451 Gli1 protein_coding Interval_173148 chrX 73560191 73561332 + 0 NA intron (ENSMUSG00000031376.15, intron 21 of 21) protein_coding-intron (ENSMUSG00000031376.15, intron 20 of 20) 23362 ENSMUSG00000118463.1 ENSMUSG00000118463 ENSMUST00000238737 Gm9730 unitary_pseudogene Interval_33428 chr11 116493837 116494040 + 0 NA intron (ENSMUSG00000015869.16, intron 1 of 5) protein_coding-intron (ENSMUSG00000015869.16, intron 1 of 5) -3624 ENSMUSG00000015869.16 ENSMUSG00000015869 ENSMUST00000144154 Prpsap1 protein_coding Interval_100567 chr2 170158067 170159044 + 0 NA Intergenic Intergenic -10452 ENSMUSG00000052056.14 ENSMUSG00000052056 ENSMUST00000149318 Zfp217 protein_coding Interval_174265 chrX 142529875 142530118 + 0 NA Intergenic Intergenic 3874 ENSMUSG00000081750.3 ENSMUSG00000081750 ENSMUST00000117247 Gm4995 processed_pseudogene Interval_68177 chr16 66872147 66872386 + 0 NA intron (ENSMUSG00000064115.13, intron 2 of 3) protein_coding-intron (ENSMUSG00000064115.13, intron 3 of 9) -20237 ENSMUSG00000045178.10 ENSMUSG00000045178 ENSMUST00000050665 4933411O13Rik antisense Interval_45925 chr13 59342284 59342587 + 0 NA Intergenic Intergenic -12192 ENSMUSG00000114240.1 ENSMUSG00000114240 ENSMUST00000224237 Gm47360 lincRNA Interval_22356 chr11 9062566 9062928 + 0 NA intron (ENSMUSG00000040978.4, intron 6 of 6) protein_coding-intron (ENSMUSG00000040978.4, intron 6 of 6) -13756 ENSMUSG00000040985.13 ENSMUSG00000040985 ENSMUST00000102909 Sun3 protein_coding Interval_133854 chr6 13474201 13475774 + 0 NA Intergenic Intergenic -13030 ENSMUSG00000107500.1 ENSMUSG00000107500 ENSMUST00000204007 Gm2796 processed_pseudogene Interval_138149 chr6 85489086 85490189 + 0 NA intron (ENSMUSG00000047013.15, intron 1 of 13) protein_coding-intron (ENSMUSG00000047013.15, intron 1 of 12) 13221 ENSMUSG00000047013.15 ENSMUSG00000047013 ENSMUST00000161546 Fbxo41 protein_coding Interval_114567 chr4 82536175 82538345 + 0 NA intron (ENSMUSG00000087413.1, intron 1 of 1) antisense-intron (ENSMUSG00000087413.1, intron 1 of 1) 29244 ENSMUSG00000087413.1 ENSMUSG00000087413 ENSMUST00000139835 Gm11266 antisense Interval_112238 chr4 37532813 37533007 + 0 NA Intergenic Intergenic 235005 ENSMUSG00000088718.1 ENSMUSG00000088718 ENSMUST00000158093 Gm22732 snoRNA Interval_165787 chr9 53035046 53035304 + 0 NA Intergenic Intergenic -129013 ENSMUSG00000111693.1 ENSMUSG00000111693 ENSMUST00000213563 Gm47986 processed_pseudogene Interval_67232 chr16 44612579 44612869 + 0 NA Intergenic Intergenic -53827 ENSMUSG00000022687.12 ENSMUSG00000022687 ENSMUST00000114634 Boc protein_coding Interval_127231 chr5 101703557 101704529 + 0 NA promoter-TSS (ENSMUSG00000105097.1) lincRNA-promoter-TSS (ENSMUSG00000105097.1) 20 ENSMUSG00000105097.1 ENSMUSG00000105097 ENSMUST00000196076 Gm42133 lincRNA Interval_99436 chr2 161063263 161063638 + 0 NA intron (ENSMUSG00000057133.14, intron 1 of 16) protein_coding-intron (ENSMUSG00000057133.14, intron 1 of 36) -45961 ENSMUSG00000109780.1 ENSMUSG00000109780 ENSMUST00000209874 Gm45447 antisense Interval_105636 chr3 88275685 88277320 + 0 NA intron (ENSMUSG00000103766.5, intron 1 of 9) protein_coding-intron (ENSMUSG00000103766.5, intron 2 of 7) 8251 ENSMUSG00000103574.1 ENSMUSG00000103574 ENSMUST00000195161 Gm37116 processed_pseudogene Interval_31234 chr11 99050875 99051354 + 0 NA intron (ENSMUSG00000017493.12, intron 3 of 3) protein_coding-intron (ENSMUSG00000017493.12, intron 3 of 3) 8928 ENSMUSG00000017493.12 ENSMUSG00000017493 ENSMUST00000140772 Igfbp4 protein_coding Interval_18206 chr10 83696017 83696643 + 0 NA Intergenic Intergenic 37059 ENSMUSG00000112072.1 ENSMUSG00000112072 ENSMUST00000218849 Gm47244 processed_pseudogene Interval_9404 chr1 156852676 156853790 + 0 NA intron (ENSMUSG00000033544.6, intron 2 of 4) protein_coding-intron (ENSMUSG00000033544.6, intron 2 of 4) 5626 ENSMUSG00000103303.1 ENSMUSG00000103303 ENSMUST00000194998 Gm37802 TEC Interval_111864 chr4 32076211 32076526 + 0 NA Intergenic Intergenic 24630 ENSMUSG00000082398.1 ENSMUSG00000082398 ENSMUST00000118472 Gm11927 processed_pseudogene Interval_23263 chr11 20990567 20991192 + 0 NA Intergenic Intergenic -53178 ENSMUSG00000096061.1 ENSMUSG00000096061 ENSMUST00000178821 Gm23681 miRNA Interval_36222 chr12 39888130 39889094 + 0 NA Intergenic Intergenic 13162 ENSMUSG00000113761.1 ENSMUSG00000113761 ENSMUST00000221392 Gm4263 transcribed_processed_pseudogene Interval_119907 chr4 140815779 140817613 + 0 NA exon (ENSMUSG00000085918.1, exon 3 of 3) processed_transcript-exon (ENSMUSG00000085918.1, exon 3 of 3) 5703 ENSMUSG00000085918.1 ENSMUSG00000085918 ENSMUST00000151848 Gm13032 processed_transcript Interval_23586 chr11 23577084 23578485 + 0 NA intron (ENSMUSG00000042208.15, intron 20 of 21) protein_coding-intron (ENSMUSG00000042208.15, intron 18 of 19) -18942 ENSMUSG00000085415.1 ENSMUSG00000085415 ENSMUST00000125204 Selenok-ps1 processed_transcript Interval_96165 chr2 120187566 120187837 + 0 NA intron (ENSMUSG00000050211.14, intron 3 of 16) protein_coding-intron (ENSMUSG00000050211.14, intron 5 of 19) -50141 ENSMUSG00000027293.13 ENSMUSG00000027293 ENSMUST00000148073 Ehd4 protein_coding Interval_139873 chr6 112203020 112203883 + 0 NA Intergenic Intergenic -7257 ENSMUSG00000100219.1 ENSMUSG00000100219 ENSMUST00000186102 1700054K19Rik lincRNA Interval_143736 chr7 15981511 15982101 + 0 NA intron (ENSMUSG00000109984.1, intron 2 of 3) protein_coding-intron (ENSMUSG00000070808.4, intron 6 of 13) 9923 ENSMUSG00000109984.1 ENSMUSG00000109984 ENSMUST00000210035 Gm38948 lincRNA Interval_172011 chr9 123492116 123492427 + 0 NA intron (ENSMUSG00000025239.3, intron 1 of 3) protein_coding-intron (ENSMUSG00000025239.3, intron 1 of 7) 11661 ENSMUSG00000025239.3 ENSMUSG00000025239 ENSMUST00000214309 Limd1 protein_coding Interval_38685 chr12 81018329 81020658 + 0 NA Intergenic Intergenic -7335 ENSMUSG00000021136.13 ENSMUSG00000021136 ENSMUST00000129362 Smoc1 protein_coding Interval_55924 chr14 102518850 102519067 + 0 NA Intergenic Intergenic 81935 ENSMUSG00000115696.1 ENSMUSG00000115696 ENSMUST00000228104 Gm49292 lincRNA Interval_67615 chr16 52717946 52719805 + 0 NA Intergenic Intergenic 96869 ENSMUSG00000116611.1 ENSMUSG00000116611 ENSMUST00000232028 4930404A05Rik lincRNA Interval_5020 chr1 84286818 84287072 + 0 NA intron (ENSMUSG00000045658.16, intron 2 of 4) protein_coding-intron (ENSMUSG00000045658.16, intron 1 of 2) -2322 ENSMUSG00000045658.16 ENSMUSG00000045658 ENSMUST00000187992 Pid1 protein_coding Interval_160834 chr8 113487925 113488460 + 0 NA Intergenic Intergenic 31414 ENSMUSG00000077289.1 ENSMUSG00000077289 ENSMUST00000104101 Gm25766 snoRNA Interval_110247 chr3 154819866 154820108 + 0 NA intron (ENSMUSG00000040086.13, intron 21 of 22) protein_coding-intron (ENSMUSG00000040086.13, intron 23 of 24) -19620 ENSMUSG00000118443.1 ENSMUSG00000118443 ENSMUST00000238360 Gm18589 unitary_pseudogene Interval_134664 chr6 30208678 30209084 + 0 NA Intergenic Intergenic 35988 ENSMUSG00000103108.2 ENSMUSG00000103108 ENSMUST00000194541 Rncr4 lincRNA Interval_18769 chr10 90345371 90345593 + 0 NA intron (ENSMUSG00000058589.14, intron 11 of 25) protein_coding-intron (ENSMUSG00000058589.14, intron 11 of 17) -105428 ENSMUSG00000088221.1 ENSMUSG00000088221 ENSMUST00000157596 Gm22602 snRNA Interval_76635 chr17 83025057 83025867 + 0 NA Intergenic Intergenic -43443 ENSMUSG00000100154.1 ENSMUSG00000100154 ENSMUST00000187700 Gm29052 lincRNA Interval_20983 chr10 123004641 123006025 + 0 NA intron (ENSMUSG00000034602.15, intron 20 of 22) protein_coding-intron (ENSMUSG00000034602.15, intron 31 of 33) -19502 ENSMUSG00000112237.1 ENSMUSG00000112237 ENSMUST00000218534 D630033A02Rik transcribed_processed_pseudogene Interval_146291 chr7 45163825 45164303 + 0 NA promoter-TSS (ENSMUSG00000070570.5) protein_coding-promoter-TSS (ENSMUSG00000070570.5) -5837 ENSMUSG00000070570.5 ENSMUSG00000070570 ENSMUST00000211652 Slc17a7 protein_coding Interval_115078 chr4 89306852 89307231 + 0 NA exon (ENSMUSG00000073802.5, exon 2 of 2) protein_coding-exon (ENSMUSG00000073802.5, exon 2 of 2) 3998 ENSMUSG00000073802.5 ENSMUSG00000073802 ENSMUST00000097981 Cdkn2b protein_coding Interval_35565 chr12 24858462 24860660 + 0 NA intron (ENSMUSG00000020646.17, intron 1 of 9) protein_coding-intron (ENSMUSG00000020646.17, intron 1 of 9) 27930 ENSMUSG00000020646.17 ENSMUSG00000020646 ENSMUST00000222994 Mboat2 protein_coding Interval_94809 chr2 94525754 94526135 + 0 NA Intergenic Intergenic 12125 ENSMUSG00000106196.1 ENSMUSG00000106196 ENSMUST00000116740 Gm44461 miRNA Interval_106315 chr3 95310975 95311344 + 0 NA TTS (ENSMUSG00000093424.3) antisense-TTS (ENSMUSG00000093424.3) 3909 ENSMUSG00000093424.3 ENSMUSG00000093424 ENSMUST00000176569 6330562C20Rik antisense Interval_95549 chr2 112199746 112200051 + 0 NA Intergenic Intergenic 32174 ENSMUSG00000109522.1 ENSMUSG00000109522 ENSMUST00000208550 Olfr1319-ps1 unprocessed_pseudogene Interval_147929 chr7 75643812 75644648 + 0 NA promoter-TSS (ENSMUSG00000066406.16) protein_coding-promoter-TSS (ENSMUSG00000066406.16) -24643 ENSMUSG00000087896.1 ENSMUSG00000087896 ENSMUST00000157271 Gm25282 snRNA Interval_69460 chr16 93669519 93672170 + 0 NA Intergenic Intergenic -12415 ENSMUSG00000022947.8 ENSMUSG00000022947 ENSMUST00000231302 Cbr3 protein_coding Interval_164954 chr9 43349627 43349885 + 0 NA Intergenic Intergenic -26869 ENSMUSG00000110823.1 ENSMUSG00000110823 ENSMUST00000216190 Gm36799 lincRNA Interval_25769 chr11 51619108 51620060 + 0 NA promoter-TSS (ENSMUSG00000001056.3) protein_coding-promoter-TSS (ENSMUSG00000001056.3) -151 ENSMUSG00000001056.3 ENSMUSG00000001056 ENSMUST00000001083 Nhp2 protein_coding Interval_144096 chr7 19399326 19400123 + 0 NA exon (ENSMUSG00000040714.14, exon 1 of 13) protein_coding-exon (ENSMUSG00000040714.14, exon 1 of 13) -3742 ENSMUSG00000040714.14 ENSMUSG00000040714 ENSMUST00000125246 Klc3 protein_coding Interval_95515 chr2 110960945 110961950 + 0 NA Intergenic Intergenic 96127 ENSMUSG00000079171.3 ENSMUSG00000079171 ENSMUST00000136950 Gm13942 lincRNA Interval_125372 chr5 66523528 66524014 + 0 NA TTS (ENSMUSG00000107091.1) TEC-TTS (ENSMUSG00000107091.1) 2341 ENSMUSG00000107091.1 ENSMUSG00000107091 ENSMUST00000202454 Gm43343 TEC Interval_88305 chr2 3525573 3525922 + 0 NA exon (ENSMUSG00000039496.8, exon 4 of 4) protein_coding-exon (ENSMUSG00000039496.8, exon 4 of 4) -5538 ENSMUSG00000081278.1 ENSMUSG00000081278 ENSMUST00000118031 Gm13186 processed_pseudogene Interval_121603 chr5 3820172 3821652 + 0 NA TTS (ENSMUSG00000000600.15) protein_coding-TTS (ENSMUSG00000000600.15) 17723 ENSMUSG00000000600.15 ENSMUSG00000000600 ENSMUST00000200004 Krit1 protein_coding Interval_123961 chr5 36884548 36885240 + 0 NA intron (ENSMUSG00000029120.10, intron 1 of 3) protein_coding-intron (ENSMUSG00000029120.10, intron 1 of 8) -8015 ENSMUSG00000087487.1 ENSMUSG00000087487 ENSMUST00000152862 Ppp2r2cos antisense Interval_132634 chr5 146867135 146868645 + 0 NA Intergenic Intergenic 22125 ENSMUSG00000029641.8 ENSMUSG00000029641 ENSMUST00000198570 Rasl11a protein_coding Interval_78620 chr18 15404871 15405312 + 0 NA intron (ENSMUSG00000024411.11, intron 1 of 5) protein_coding-intron (ENSMUSG00000024411.11, intron 1 of 5) 2004 ENSMUSG00000117541.1 ENSMUSG00000117541 ENSMUST00000234487 Gm50048 antisense Interval_142345 chr6 140730786 140731567 + 0 NA intron (ENSMUSG00000079264.1, intron 1 of 1) protein_coding-intron (ENSMUSG00000079264.1, intron 1 of 1) 1892 ENSMUSG00000079264.1 ENSMUSG00000079264 ENSMUST00000111844 Gm11077 protein_coding Interval_123950 chr5 36820019 36821024 + 0 NA intron (ENSMUSG00000029119.9, intron 7 of 18) protein_coding-intron (ENSMUSG00000029119.9, intron 7 of 18) -7558 ENSMUSG00000029119.9 ENSMUSG00000029119 ENSMUST00000124711 Man2b2 protein_coding Interval_66291 chr16 32926570 32927644 + 0 NA intron (ENSMUSG00000022801.13, intron 1 of 17) protein_coding-intron (ENSMUSG00000022801.13, intron 1 of 20) 3889 ENSMUSG00000091997.1 ENSMUSG00000091997 ENSMUST00000163830 Gm6611 processed_pseudogene Interval_83081 chr18 81114983 81115293 + 0 NA Intergenic Intergenic 32074 ENSMUSG00000118262.1 ENSMUSG00000118262 ENSMUST00000237649 Gm50423 lincRNA Interval_11800 chr1 185515052 185516667 + 0 NA Intergenic Intergenic 28565 ENSMUSG00000102185.1 ENSMUSG00000102185 ENSMUST00000192616 5033404E19Rik transcribed_processed_pseudogene Interval_15423 chr10 45947144 45947687 + 0 NA Intergenic Intergenic 72110 ENSMUSG00000110841.1 ENSMUSG00000110841 ENSMUST00000217344 Gpx4-ps2 transcribed_processed_pseudogene Interval_85205 chr19 23757036 23759537 + 0 NA promoter-TSS (ENSMUSG00000024897.9) protein_coding-promoter-TSS (ENSMUSG00000024897.9) -10285 ENSMUSG00000117685.1 ENSMUSG00000117685 ENSMUST00000238019 Gm50299 lincRNA Interval_85645 chr19 29287617 29288134 + 0 NA intron (ENSMUSG00000024789.13, intron 9 of 23) protein_coding-intron (ENSMUSG00000024789.13, intron 9 of 23) 35434 ENSMUSG00000024789.13 ENSMUSG00000024789 ENSMUST00000238009 Jak2 protein_coding Interval_62679 chr15 96217146 96218685 + 0 NA intron (ENSMUSG00000097536.2, intron 1 of 6) lincRNA-intron (ENSMUSG00000097536.2, intron 1 of 6) 36072 ENSMUSG00000097619.8 ENSMUSG00000097619 ENSMUST00000229950 4833422M21Rik processed_transcript Interval_63117 chr15 99176919 99177141 + 0 NA intron (ENSMUSG00000051934.5, intron 5 of 5) protein_coding-intron (ENSMUSG00000051934.5, intron 5 of 12) -2093 ENSMUSG00000087991.1 ENSMUSG00000087991 ENSMUST00000157366 Gm25057 misc_RNA Interval_102007 chr3 14886107 14887496 + 0 NA intron (ENSMUSG00000027562.12, intron 1 of 1) protein_coding-intron (ENSMUSG00000027562.12, intron 1 of 6) 162 ENSMUSG00000027562.12 ENSMUSG00000027562 ENSMUST00000195520 Car2 protein_coding Interval_67678 chr16 55905288 55907162 + 0 NA intron (ENSMUSG00000022604.18, intron 10 of 10) protein_coding-intron (ENSMUSG00000022604.18, intron 10 of 10) -10940 ENSMUSG00000075033.4 ENSMUSG00000075033 ENSMUST00000099705 Nxpe3 protein_coding Interval_129937 chr5 123163196 123163543 + 0 NA promoter-TSS (ENSMUSG00000038384.16) protein_coding-promoter-TSS (ENSMUSG00000038384.16) 19353 ENSMUSG00000029445.13 ENSMUSG00000029445 ENSMUST00000124110 Hpd protein_coding Interval_49572 chr13 113045940 113047491 + 0 NA promoter-TSS (ENSMUSG00000021760.5) protein_coding-promoter-TSS (ENSMUSG00000021760.5) -322 ENSMUSG00000021760.5 ENSMUSG00000021760 ENSMUST00000022282 Gpx8 protein_coding Interval_24188 chr11 31106900 31107258 + 0 NA Intergenic Intergenic -12924 ENSMUSG00000082049.1 ENSMUSG00000082049 ENSMUST00000120846 Gm12105 processed_pseudogene Interval_122474 chr5 23290074 23290307 + 0 NA Intergenic Intergenic -10279 ENSMUSG00000098903.1 ENSMUSG00000098903 ENSMUST00000184168 Gm28022 miRNA Interval_166129 chr9 56898873 56899078 + 0 NA exon (ENSMUSG00000032911.6, exon 10 of 10) protein_coding-exon (ENSMUSG00000032911.6, exon 10 of 10) 2652 ENSMUSG00000032911.6 ENSMUSG00000032911 ENSMUST00000217052 Cspg4 protein_coding Interval_132807 chr5 147989935 147990947 + 0 NA intron (ENSMUSG00000029651.16, intron 1 of 14) protein_coding-intron (ENSMUSG00000029651.16, intron 1 of 14) -33275 ENSMUSG00000085565.1 ENSMUSG00000085565 ENSMUST00000138406 Gm15721 lincRNA Interval_66604 chr16 35585057 35585927 + 0 NA intron (ENSMUSG00000052133.16, intron 1 of 5) protein_coding-intron (ENSMUSG00000052133.16, intron 1 of 21) -11936 ENSMUSG00000052192.5 ENSMUSG00000052192 ENSMUST00000143451 Gm5963 processed_pseudogene Interval_47748 chr13 92266524 92268210 + 0 NA intron (ENSMUSG00000014850.15, intron 16 of 24) protein_coding-intron (ENSMUSG00000014850.15, intron 15 of 23) -38613 ENSMUSG00000100622.1 ENSMUSG00000100622 ENSMUST00000188317 Gm20379 protein_coding Interval_80195 chr18 38168115 38168386 + 0 NA Intergenic Intergenic 35590 ENSMUSG00000051375.15 ENSMUSG00000051375 ENSMUST00000193828 Pcdh1 protein_coding Interval_66095 chr16 31572345 31572634 + 0 NA Intergenic Intergenic 20731 ENSMUSG00000116793.1 ENSMUSG00000116793 ENSMUST00000232216 Gm34256 lincRNA Interval_26884 chr11 61272554 61273309 + 0 NA Intergenic Intergenic -21921 ENSMUSG00000010025.19 ENSMUSG00000010025 ENSMUST00000149298 Aldh3a2 protein_coding Interval_151987 chr7 127975769 127976749 + 0 NA exon (ENSMUSG00000030795.18, exon 1 of 1) protein_coding-exon (ENSMUSG00000030795.18, exon 1 of 1) -1873 ENSMUSG00000030795.18 ENSMUSG00000030795 ENSMUST00000079045 Fus protein_coding Interval_74612 chr17 53746132 53747595 + 0 NA exon (ENSMUSG00000106327.1, exon 1 of 1) processed_pseudogene-exon (ENSMUSG00000106327.1, exon 1 of 1) 746 ENSMUSG00000106327.1 ENSMUSG00000106327 ENSMUST00000198886 Ckb-ps2 processed_pseudogene Interval_143058 chr6 148981163 148981343 + 0 NA Intergenic Intergenic 13937 ENSMUSG00000080536.1 ENSMUSG00000080536 ENSMUST00000116886 Gm25539 snoRNA Interval_37508 chr12 69446160 69447109 + 0 NA Intergenic Intergenic 28913 ENSMUSG00000113035.1 ENSMUSG00000113035 ENSMUST00000222980 5830428M24Rik processed_transcript Interval_171261 chr9 115743572 115744311 + 0 NA Intergenic Intergenic 63198 ENSMUSG00000110905.1 ENSMUSG00000110905 ENSMUST00000215982 Gm48007 lincRNA Interval_117515 chr4 124325117 124326112 + 0 NA TTS (ENSMUSG00000086978.1) lincRNA-TTS (ENSMUSG00000086978.1) 6894 ENSMUSG00000086978.1 ENSMUSG00000086978 ENSMUST00000125578 4933435F18Rik lincRNA Interval_167394 chr9 68647865 68648297 + 0 NA Intergenic Intergenic -5810 ENSMUSG00000032238.17 ENSMUSG00000032238 ENSMUST00000113624 Rora protein_coding Interval_75641 chr17 69678825 69679054 + 0 NA Intergenic Intergenic -84162 ENSMUSG00000088581.1 ENSMUSG00000088581 ENSMUST00000157956 Gm22967 misc_RNA Interval_168675 chr9 85730200 85730597 + 0 NA intron (ENSMUSG00000035941.15, intron 6 of 27) protein_coding-intron (ENSMUSG00000035941.15, intron 6 of 28) -11860 ENSMUSG00000035941.15 ENSMUSG00000035941 ENSMUST00000186447 Ibtk protein_coding Interval_55290 chr14 80421753 80421978 + 0 NA Intergenic Intergenic -20540 ENSMUSG00000115036.1 ENSMUSG00000115036 ENSMUST00000227575 Gm49043 processed_pseudogene Interval_25834 chr11 52044363 52044721 + 0 NA intron (ENSMUSG00000020389.19, intron 3 of 4) protein_coding-intron (ENSMUSG00000020389.19, intron 13 of 13) -5071 ENSMUSG00000084800.1 ENSMUSG00000084800 ENSMUST00000133940 Gm12205 antisense Interval_63322 chr15 100300358 100301970 + 0 NA Intergenic Intergenic -3064 ENSMUSG00000054619.7 ENSMUSG00000054619 ENSMUST00000230018 Mettl7a1 protein_coding Interval_13837 chr10 23657901 23659550 + 0 NA Intergenic Intergenic -36577 ENSMUSG00000112868.1 ENSMUSG00000112868 ENSMUST00000219522 4930520K02Rik lincRNA Interval_145442 chr7 34774865 34776124 + 0 NA intron (ENSMUSG00000060402.8, intron 1 of 2) protein_coding-intron (ENSMUSG00000060402.8, intron 1 of 3) -21682 ENSMUSG00000060402.8 ENSMUSG00000060402 ENSMUST00000205390 Chst8 protein_coding Interval_114269 chr4 70360190 70360601 + 0 NA intron (ENSMUSG00000039298.16, intron 7 of 36) protein_coding-intron (ENSMUSG00000039298.16, intron 5 of 33) 50048 ENSMUSG00000039298.16 ENSMUSG00000039298 ENSMUST00000126416 Cdk5rap2 protein_coding Interval_49952 chr13 118774664 118776214 + 0 NA intron (ENSMUSG00000021732.14, intron 1 of 2) protein_coding-intron (ENSMUSG00000021732.14, intron 1 of 2) -60043 ENSMUSG00000086709.1 ENSMUSG00000086709 ENSMUST00000144680 Gm16263 antisense Interval_162253 chr8 126475902 126476848 + 0 NA promoter-TSS (ENSMUSG00000074026.3) processed_pseudogene-promoter-TSS (ENSMUSG00000074026.3) 37 ENSMUSG00000074026.3 ENSMUSG00000074026 ENSMUST00000098307 Gm6091 processed_pseudogene Interval_45237 chr13 53393136 53394796 + 0 NA promoter-TSS (ENSMUSG00000107008.3) lincRNA-promoter-TSS (ENSMUSG00000107008.3) 309 ENSMUSG00000107008.3 ENSMUSG00000107008 ENSMUST00000202739 Gm2762 lincRNA Interval_27831 chr11 70290542 70291151 + 0 NA Intergenic Intergenic 31602 ENSMUSG00000018907.10 ENSMUSG00000018907 ENSMUST00000149060 Alox12e protein_coding Interval_104486 chr3 66570359 66570740 + 0 NA Intergenic Intergenic -6998 ENSMUSG00000103600.1 ENSMUSG00000103600 ENSMUST00000193914 Gm17952 processed_pseudogene Interval_161907 chr8 123682031 123682973 + 0 NA intron (ENSMUSG00000092329.1, intron 1 of 15) protein_coding-intron (ENSMUSG00000092329.1, intron 1 of 15) 28573 ENSMUSG00000039960.5 ENSMUSG00000039960 ENSMUST00000045487 Rhou protein_coding Interval_167954 chr9 74909080 74910012 + 0 NA Intergenic Intergenic 43062 ENSMUSG00000043013.10 ENSMUSG00000043013 ENSMUST00000160499 Onecut1 protein_coding Interval_68 GL456212.1 131953 133692 + 0 NA NA NA NA NA Interval_41632 chr12 117215004 117215550 + 0 NA intron (ENSMUSG00000056553.14, intron 15 of 22) protein_coding-intron (ENSMUSG00000056553.14, intron 15 of 22) -35540 ENSMUSG00000065538.1 ENSMUSG00000065538 ENSMUST00000083604 Mir153 miRNA Interval_168413 chr9 80145931 80146463 + 0 NA Intergenic Intergenic -19030 ENSMUSG00000033577.18 ENSMUSG00000033577 ENSMUST00000138650 Myo6 protein_coding Interval_136920 chr6 64568577 64569028 + 0 NA intron (ENSMUSG00000071424.10, intron 14 of 15) protein_coding-intron (ENSMUSG00000071424.10, intron 14 of 15) -94386 ENSMUSG00000071424.10 ENSMUSG00000071424 ENSMUST00000210324 Grid2 protein_coding Interval_7510 chr1 131921592 131922085 + 0 NA intron (ENSMUSG00000026434.12, intron 2 of 6) protein_coding-intron (ENSMUSG00000026434.12, intron 2 of 6) 7309 ENSMUSG00000103569.1 ENSMUSG00000103569 ENSMUST00000192346 Gm38067 TEC Interval_18950 chr10 93322793 93323928 + 0 NA TTS (ENSMUSG00000111531.1) lincRNA-TTS (ENSMUSG00000111531.1) 5957 ENSMUSG00000111531.1 ENSMUSG00000111531 ENSMUST00000213849 Gm32688 lincRNA Interval_166523 chr9 60510174 60511130 + 0 NA intron (ENSMUSG00000032289.15, intron 1 of 1) protein_coding-intron (ENSMUSG00000032289.15, intron 1 of 17) -13526 ENSMUSG00000032289.15 ENSMUSG00000032289 ENSMUST00000146099 Thsd4 protein_coding Interval_17419 chr10 76499509 76500097 + 0 NA intron (ENSMUSG00000001150.7, intron 18 of 28) protein_coding-intron (ENSMUSG00000001150.7, intron 18 of 28) 18602 ENSMUSG00000001150.7 ENSMUSG00000001150 ENSMUST00000218904 Mcm3ap protein_coding Interval_7655 chr1 132850554 132852128 + 0 NA Intergenic Intergenic -29014 ENSMUSG00000026443.3 ENSMUSG00000026443 ENSMUST00000159088 Lrrn2 protein_coding Interval_85962 chr19 34243130 34243316 + 0 NA intron (ENSMUSG00000035783.9, intron 8 of 8) protein_coding-intron (ENSMUSG00000035783.9, intron 8 of 8) 11007 ENSMUSG00000035783.9 ENSMUSG00000035783 ENSMUST00000238147 Acta2 protein_coding Interval_20864 chr10 121602087 121602602 + 0 NA TTS (ENSMUSG00000034667.8) protein_coding-TTS (ENSMUSG00000034667.8) -1531 ENSMUSG00000034667.8 ENSMUSG00000034667 ENSMUST00000217865 Xpot protein_coding Interval_48526 chr13 99824487 99824845 + 0 NA Intergenic Intergenic 76425 ENSMUSG00000021647.7 ENSMUSG00000021647 ENSMUST00000224142 Cartpt protein_coding Interval_65032 chr16 18587882 18588992 + 0 NA intron (ENSMUSG00000009097.10, intron 1 of 8) protein_coding-intron (ENSMUSG00000009097.10, intron 1 of 8) 371 ENSMUSG00000009097.10 ENSMUSG00000009097 ENSMUST00000232589 Tbx1 protein_coding Interval_59239 chr15 49434552 49435137 + 0 NA Intergenic Intergenic -103351 ENSMUSG00000065760.1 ENSMUSG00000065760 ENSMUST00000083826 Gm23848 snRNA Interval_14734 chr10 39462060 39463295 + 0 NA intron (ENSMUSG00000019843.14, intron 2 of 2) protein_coding-intron (ENSMUSG00000019843.14, intron 3 of 13) -37681 ENSMUSG00000085799.1 ENSMUSG00000085799 ENSMUST00000147879 Gm6963 processed_pseudogene Interval_138605 chr6 90360304 90361195 + 0 NA intron (ENSMUSG00000034456.15, intron 18 of 19) protein_coding-intron (ENSMUSG00000034456.15, intron 18 of 19) -8864 ENSMUSG00000034430.16 ENSMUSG00000034430 ENSMUST00000137483 Zxdc protein_coding Interval_38405 chr12 78766048 78766366 + 0 NA intron (ENSMUSG00000021112.9, intron 1 of 14) protein_coding-intron (ENSMUSG00000021112.9, intron 1 of 14) -13419 ENSMUSG00000088822.1 ENSMUSG00000088822 ENSMUST00000158197 Gm25225 snRNA Interval_100293 chr2 168213725 168215014 + 0 NA exon (ENSMUSG00000078919.10, exon 1 of 2) protein_coding-exon (ENSMUSG00000078919.10, exon 1 of 2) -7660 ENSMUSG00000051149.15 ENSMUSG00000051149 ENSMUST00000131200 Adnp protein_coding Interval_105662 chr3 88449212 88450178 + 0 NA TTS (ENSMUSG00000028064.17) protein_coding-TTS (ENSMUSG00000028064.17) 1755 ENSMUSG00000028064.17 ENSMUSG00000028064 ENSMUST00000146921 Sema4a protein_coding Interval_60372 chr15 73214491 73215456 + 0 NA TTS (ENSMUSG00000022607.18) protein_coding-TTS (ENSMUSG00000022607.18) -34573 ENSMUSG00000115693.1 ENSMUSG00000115693 ENSMUST00000228696 1700085D07Rik antisense Interval_57769 chr15 19369011 19369204 + 0 NA intron (ENSMUSG00000114971.1, intron 2 of 3) lincRNA-intron (ENSMUSG00000114971.1, intron 2 of 3) 26315 ENSMUSG00000114971.1 ENSMUSG00000114971 ENSMUST00000228706 Gm49162 lincRNA Interval_51808 chr14 32351124 32351939 + 0 NA Intergenic Intergenic 29512 ENSMUSG00000021913.8 ENSMUSG00000021913 ENSMUST00000228286 Ogdhl protein_coding Interval_64945 chr16 17440433 17440914 + 0 NA Intergenic Intergenic -11803 ENSMUSG00000006134.4 ENSMUSG00000006134 ENSMUST00000231629 Crkl protein_coding Interval_134937 chr6 33937424 33937671 + 0 NA intron (ENSMUSG00000029763.17, intron 17 of 17) protein_coding-intron (ENSMUSG00000029763.17, intron 17 of 17) 54864 ENSMUSG00000087441.1 ENSMUSG00000087441 ENSMUST00000155496 Gm13853 lincRNA Interval_59018 chr15 41771410 41771654 + 0 NA intron (ENSMUSG00000097232.1, intron 1 of 3) protein_coding-intron (ENSMUSG00000022307.16, intron 3 of 15) 17379 ENSMUSG00000097232.1 ENSMUSG00000097232 ENSMUST00000180418 Gm26854 antisense Interval_142480 chr6 142756573 142757376 + 0 NA exon (ENSMUSG00000030282.14, exon 1 of 8) protein_coding-exon (ENSMUSG00000030282.14, exon 1 of 8) 199 ENSMUSG00000030282.14 ENSMUSG00000030282 ENSMUST00000146643 Cmas protein_coding Interval_29207 chr11 81534340 81535081 + 0 NA intron (ENSMUSG00000020704.13, intron 1 of 9) protein_coding-intron (ENSMUSG00000020704.13, intron 1 of 9) 38763 ENSMUSG00000080980.1 ENSMUSG00000080980 ENSMUST00000117522 1700071K01Rik processed_pseudogene Interval_118902 chr4 134370494 134372805 + 0 NA exon (ENSMUSG00000028838.11, exon 1 of 11) protein_coding-exon (ENSMUSG00000028838.11, exon 1 of 11) -6225 ENSMUSG00000028838.11 ENSMUSG00000028838 ENSMUST00000142730 Extl1 protein_coding Interval_92912 chr2 68435917 68436726 + 0 NA intron (ENSMUSG00000027030.15, intron 1 of 15) protein_coding-intron (ENSMUSG00000027030.15, intron 1 of 17) -39761 ENSMUSG00000085182.1 ENSMUSG00000085182 ENSMUST00000153354 Gm13596 antisense Interval_168977 chr9 89908364 89911872 + 0 NA exon (ENSMUSG00000032356.12, exon 1 of 3) protein_coding-exon (ENSMUSG00000032356.12, exon 1 of 3) 206 ENSMUSG00000032356.12 ENSMUSG00000032356 ENSMUST00000190073 Rasgrf1 protein_coding Interval_174782 chrX 166533692 166533937 + 0 NA intron (ENSMUSG00000000402.2, intron 9 of 11) protein_coding-intron (ENSMUSG00000000402.2, intron 9 of 11) -30417 ENSMUSG00000051224.13 ENSMUSG00000051224 ENSMUST00000112187 Tceanc protein_coding Interval_80301 chr18 38972454 38973834 + 0 NA intron (ENSMUSG00000118193.1, intron 2 of 5) protein_coding-intron (ENSMUSG00000118193.1, intron 2 of 5) 21048 ENSMUSG00000086991.1 ENSMUSG00000086991 ENSMUST00000131421 Gm15334 antisense Interval_127519 chr5 104806298 104807623 + 0 NA Intergenic Intergenic 31181 ENSMUSG00000048334.8 ENSMUSG00000048334 ENSMUST00000055593 Gm8258 processed_pseudogene Interval_105652 chr3 88375777 88376858 + 0 NA intron (ENSMUSG00000096792.2, intron 1 of 2) unprocessed_pseudogene-intron (ENSMUSG00000096792.2, intron 1 of 2) 294 ENSMUSG00000096792.2 ENSMUSG00000096792 ENSMUST00000179946 Gm21956 unprocessed_pseudogene Interval_111155 chr4 13326011 13327488 + 0 NA Intergenic Intergenic -59699 ENSMUSG00000080359.2 ENSMUSG00000080359 ENSMUST00000116709 Gm26250 miRNA Interval_60158 chr15 66676739 66677235 + 0 NA intron (ENSMUSG00000053469.14, intron 5 of 47) protein_coding-intron (ENSMUSG00000053469.14, intron 5 of 47) 46099 ENSMUSG00000072501.5 ENSMUSG00000072501 ENSMUST00000231177 Phf20l1 protein_coding Interval_147017 chr7 58420577 58420910 + 0 NA Intergenic Intergenic -97419 ENSMUSG00000109348.1 ENSMUSG00000109348 ENSMUST00000207950 Gm44852 processed_pseudogene Interval_40551 chr12 105684129 105685982 + 0 NA promoter-TSS (ENSMUSG00000044715.7) protein_coding-promoter-TSS (ENSMUSG00000044715.7) -346 ENSMUSG00000044715.7 ENSMUSG00000044715 ENSMUST00000222841 Gskip protein_coding Interval_116620 chr4 116123034 116124332 + 0 NA promoter-TSS (ENSMUSG00000028702.15) protein_coding-promoter-TSS (ENSMUSG00000028702.15) -701 ENSMUSG00000028702.15 ENSMUSG00000028702 ENSMUST00000143089 Rad54l protein_coding Interval_102863 chr3 32364101 32366545 + 0 NA exon (ENSMUSG00000027663.12, exon 1 of 2) protein_coding-exon (ENSMUSG00000027663.12, exon 1 of 2) 691 ENSMUSG00000027663.12 ENSMUSG00000027663 ENSMUST00000195055 Zmat3 protein_coding Interval_100761 chr2 172404527 172404876 + 0 NA intron (ENSMUSG00000074570.14, intron 1 of 5) protein_coding-intron (ENSMUSG00000074570.14, intron 1 of 4) 10800 ENSMUSG00000074570.14 ENSMUSG00000074570 ENSMUST00000228775 Cass4 protein_coding Interval_37580 chr12 70047635 70048047 + 0 NA exon (ENSMUSG00000021068.17, exon 3 of 3) protein_coding-exon (ENSMUSG00000021068.17, exon 3 of 3) 42776 ENSMUSG00000021068.17 ENSMUSG00000021068 ENSMUST00000239242 Nin protein_coding Interval_163399 chr9 21251040 21252225 + 0 NA Intergenic Intergenic -3189 ENSMUSG00000045087.8 ENSMUSG00000045087 ENSMUST00000122088 S1pr5 protein_coding Interval_167921 chr9 74286234 74287105 + 0 NA Intergenic Intergenic -75941 ENSMUSG00000084725.2 ENSMUSG00000084725 ENSMUST00000122776 Gm24141 snRNA Interval_112169 chr4 35135542 35136459 + 0 NA intron (ENSMUSG00000073910.10, intron 1 of 1) protein_coding-intron (ENSMUSG00000073910.10, intron 1 of 3) -16056 ENSMUSG00000042993.6 ENSMUSG00000042993 ENSMUST00000058595 Ifnk protein_coding Interval_73265 chr17 35864894 35866707 + 0 NA promoter-TSS (ENSMUSG00000034595.17) protein_coding-promoter-TSS (ENSMUSG00000034595.17) 1086 ENSMUSG00000087443.1 ENSMUSG00000087443 ENSMUST00000145804 Ppp1r18os antisense Interval_34041 chr11 120150827 120151851 + 0 NA promoter-TSS (ENSMUSG00000061306.16) protein_coding-promoter-TSS (ENSMUSG00000061306.16) -27 ENSMUSG00000061306.16 ENSMUSG00000061306 ENSMUST00000152859 Slc38a10 protein_coding Interval_26179 chr11 54927636 54928200 + 0 NA intron (ENSMUSG00000020400.17, intron 7 of 7) protein_coding-intron (ENSMUSG00000020400.17, intron 8 of 17) -19517 ENSMUSG00000082180.1 ENSMUSG00000082180 ENSMUST00000118301 Gm12230 processed_pseudogene Interval_75484 chr17 67200781 67201534 + 0 NA intron (ENSMUSG00000033278.10, intron 1 of 19) protein_coding-intron (ENSMUSG00000033278.10, intron 1 of 32) -174922 ENSMUSG00000093508.1 ENSMUSG00000093508 ENSMUST00000176783 Mir5709 miRNA Interval_111022 chr4 11275275 11275755 + 0 NA intron (ENSMUSG00000045205.16, intron 10 of 12) protein_coding-intron (ENSMUSG00000045205.16, intron 16 of 18) 3904 ENSMUSG00000089185.1 ENSMUSG00000089185 ENSMUST00000158560 Gm22940 snRNA Interval_140394 chr6 117825544 117825822 + 0 NA Intergenic Intergenic -15571 ENSMUSG00000059689.15 ENSMUSG00000059689 ENSMUST00000132644 Zfp637 protein_coding Interval_171564 chr9 119222124 119222330 + 0 NA intron (ENSMUSG00000092212.3, intron 4 of 5) protein_coding-intron (ENSMUSG00000070280.13, intron 1 of 10) 9465 ENSMUSG00000092212.3 ENSMUSG00000092212 ENSMUST00000173185 Slc22a13b polymorphic_pseudogene Interval_170116 chr9 104895067 104895806 + 0 NA intron (ENSMUSG00000032564.16, intron 1 of 4) protein_coding-intron (ENSMUSG00000032564.16, intron 3 of 15) 22757 ENSMUSG00000032564.16 ENSMUSG00000032564 ENSMUST00000213452 Cpne4 protein_coding Interval_31204 chr11 98891434 98891880 + 0 NA intron (ENSMUSG00000038013.14, intron 2 of 2) protein_coding-intron (ENSMUSG00000038013.14, intron 4 of 7) 484 ENSMUSG00000038013.14 ENSMUSG00000038013 ENSMUST00000148439 Wipf2 protein_coding Interval_56859 chr14 122480566 122483032 + 0 NA Intergenic Intergenic 3699 ENSMUSG00000061524.8 ENSMUSG00000061524 ENSMUST00000137059 Zic2 protein_coding Interval_166160 chr9 57166017 57166577 + 0 NA Intergenic Intergenic -8978 ENSMUSG00000100282.1 ENSMUSG00000100282 ENSMUST00000185243 1700041C23Rik lincRNA Interval_109899 chr3 150354880 150355111 + 0 NA Intergenic Intergenic 161086 ENSMUSG00000105779.1 ENSMUSG00000105779 ENSMUST00000199849 Gm6439 processed_pseudogene Interval_96836 chr2 128739115 128739525 + 0 NA intron (ENSMUSG00000014361.5, intron 4 of 18) protein_coding-intron (ENSMUSG00000014361.5, intron 4 of 18) 14385 ENSMUSG00000085036.1 ENSMUSG00000085036 ENSMUST00000145178 Gm14011 antisense Interval_121526 chr5 3197675 3198720 + 0 NA Intergenic Intergenic -14138 ENSMUSG00000105800.1 ENSMUSG00000105800 ENSMUST00000196472 Gm18985 unprocessed_pseudogene Interval_48415 chr13 98890028 98891543 + 0 NA exon (ENSMUSG00000009470.17, exon 2 of 24) protein_coding-exon (ENSMUSG00000009470.17, exon 2 of 24) -13439 ENSMUSG00000062461.7 ENSMUSG00000062461 ENSMUST00000080866 Rpl27a-ps4 processed_pseudogene Interval_136075 chr6 50526463 50528232 + 0 NA Intergenic Intergenic 12687 ENSMUSG00000077357.1 ENSMUSG00000077357 ENSMUST00000104169 Gm26289 snoRNA Interval_120429 chr4 148572114 148572356 + 0 NA intron (ENSMUSG00000017264.16, intron 4 of 8) protein_coding-intron (ENSMUSG00000017264.16, intron 14 of 24) -2359 ENSMUSG00000082860.1 ENSMUSG00000082860 ENSMUST00000120110 Gm13204 processed_pseudogene Interval_144285 chr7 24291288 24292294 + 0 NA TTS (ENSMUSG00000050605.17) protein_coding-TTS (ENSMUSG00000050605.17) -3155 ENSMUSG00000118477.1 ENSMUSG00000118477 ENSMUST00000238397 Gm18126 processed_pseudogene Interval_39654 chr12 91815626 91816659 + 0 NA intron (ENSMUSG00000020964.14, intron 15 of 20) protein_coding-intron (ENSMUSG00000020964.14, intron 15 of 20) -24468 ENSMUSG00000077096.1 ENSMUSG00000077096 ENSMUST00000103908 Gm22015 miRNA Interval_171774 chr9 120953452 120953732 + 0 NA intron (ENSMUSG00000006932.17, intron 7 of 14) protein_coding-intron (ENSMUSG00000006932.17, intron 7 of 14) -1494 ENSMUSG00000106193.1 ENSMUSG00000106193 ENSMUST00000198187 Mir7090 miRNA Interval_3248 chr1 55161847 55164228 + 0 NA Intergenic Intergenic -1984 ENSMUSG00000061863.6 ENSMUSG00000061863 ENSMUST00000161440 Gm6822 processed_pseudogene Interval_25819 chr11 51915923 51917264 + 0 NA Intergenic Intergenic 17627 ENSMUSG00000110618.1 ENSMUSG00000110618 ENSMUST00000212253 Gm39822 lincRNA Interval_36994 chr12 56066828 56067162 + 0 NA Intergenic Intergenic -10240 ENSMUSG00000093300.1 ENSMUSG00000093300 ENSMUST00000175559 Gm23799 rRNA Interval_101233 chr2 179664209 179664423 + 0 NA intron (ENSMUSG00000000305.12, intron 2 of 2) protein_coding-intron (ENSMUSG00000000305.12, intron 2 of 15) -50749 ENSMUSG00000083410.1 ENSMUSG00000083410 ENSMUST00000120800 Gm14300 processed_pseudogene Interval_97836 chr2 144355416 144356135 + 0 NA promoter-TSS (ENSMUSG00000081450.1) processed_pseudogene-promoter-TSS (ENSMUSG00000081450.1) -142 ENSMUSG00000081450.1 ENSMUSG00000081450 ENSMUST00000119409 Gm11700 processed_pseudogene Interval_24460 chr11 33438677 33438912 + 0 NA exon (ENSMUSG00000083471.1, exon 1 of 1) processed_pseudogene-exon (ENSMUSG00000083471.1, exon 1 of 1) 345 ENSMUSG00000083471.1 ENSMUSG00000083471 ENSMUST00000119766 Gm12118 processed_pseudogene Interval_158973 chr8 88330518 88330862 + 0 NA TTS (ENSMUSG00000031660.13) protein_coding-TTS (ENSMUSG00000031660.13) 12144 ENSMUSG00000031660.13 ENSMUSG00000031660 ENSMUST00000135471 Brd7 protein_coding Interval_163888 chr9 27640865 27641605 + 0 NA Intergenic Intergenic 25050 ENSMUSG00000110851.1 ENSMUSG00000110851 ENSMUST00000213224 Gm48902 lincRNA Interval_2589 chr1 40935800 40936247 + 0 NA Intergenic Intergenic -71791 ENSMUSG00000094136.2 ENSMUSG00000094136 ENSMUST00000178542 Gm5973 processed_pseudogene Interval_105201 chr3 83789152 83790567 + 0 NA promoter-TSS (ENSMUSG00000097250.1) antisense-promoter-TSS (ENSMUSG00000097250.1) 97 ENSMUSG00000097250.1 ENSMUSG00000097250 ENSMUST00000180472 Gm26771 antisense Interval_130041 chr5 123859154 123859369 + 0 NA Intergenic Intergenic 6238 ENSMUSG00000045502.6 ENSMUSG00000045502 ENSMUST00000057145 Hcar2 protein_coding Interval_111062 chr4 11576304 11576526 + 0 NA promoter-TSS (ENSMUSG00000078773.11) protein_coding-promoter-TSS (ENSMUSG00000078773.11) -228 ENSMUSG00000078773.11 ENSMUSG00000078773 ENSMUST00000144499 Rad54b protein_coding Interval_6479 chr1 111580599 111581501 + 0 NA Intergenic Intergenic -134405 ENSMUSG00000101253.1 ENSMUSG00000101253 ENSMUST00000189363 Gm29088 lincRNA Interval_90435 chr2 30435444 30436401 + 0 NA intron (ENSMUSG00000039515.11, intron 3 of 3) protein_coding-intron (ENSMUSG00000039515.11, intron 5 of 9) 19620 ENSMUSG00000039515.11 ENSMUSG00000039515 ENSMUST00000135105 Ptpa protein_coding Interval_15978 chr10 59821618 59822237 + 0 NA intron (ENSMUSG00000020111.15, intron 8 of 12) protein_coding-intron (ENSMUSG00000020111.15, intron 10 of 13) -4130 ENSMUSG00000094824.1 ENSMUSG00000094824 ENSMUST00000104610 Gm23803 snoRNA Interval_167391 chr9 68592459 68592668 + 0 NA Intergenic Intergenic 40168 ENSMUSG00000111404.1 ENSMUSG00000111404 ENSMUST00000216343 Gm47169 processed_pseudogene Interval_158068 chr8 78520184 78520830 + 0 NA intron (ENSMUSG00000031684.11, intron 2 of 10) protein_coding-intron (ENSMUSG00000031684.11, intron 2 of 11) 11161 ENSMUSG00000031684.11 ENSMUSG00000031684 ENSMUST00000210132 Slc10a7 protein_coding Interval_121393 chr4 155498352 155498982 + 0 NA intron (ENSMUSG00000029064.15, intron 1 of 5) protein_coding-intron (ENSMUSG00000029064.15, intron 1 of 11) 4039 ENSMUSG00000082429.1 ENSMUSG00000082429 ENSMUST00000117233 Gm13171 processed_pseudogene Interval_82977 chr18 80124638 80124853 + 0 NA Intergenic Intergenic 26737 ENSMUSG00000053950.10 ENSMUSG00000053950 ENSMUST00000066743 Adnp2 protein_coding Interval_170772 chr9 110665896 110666967 + 0 NA promoter-TSS (ENSMUSG00000019659.8) protein_coding-promoter-TSS (ENSMUSG00000019659.8) 8523 ENSMUSG00000104945.1 ENSMUSG00000104945 ENSMUST00000197421 Gm35715 antisense Interval_52389 chr14 45539446 45540751 + 0 NA intron (ENSMUSG00000115324.1, intron 2 of 4) bidirectional_promoter_lncRNA-intron (ENSMUSG00000115324.1, intron 2 of 4) 3469 ENSMUSG00000115846.1 ENSMUSG00000115846 ENSMUST00000228455 Gm41144 lincRNA Interval_74207 chr17 47472571 47474012 + 0 NA Intergenic Intergenic 28981 ENSMUSG00000023980.7 ENSMUSG00000023980 ENSMUST00000233675 Taf8 protein_coding Interval_23629 chr11 23957313 23957773 + 0 NA Intergenic Intergenic -28689 ENSMUSG00000084206.1 ENSMUSG00000084206 ENSMUST00000117533 Gm12062 processed_pseudogene Interval_91677 chr2 47161793 47162078 + 0 NA Intergenic Intergenic -380049 ENSMUSG00000092853.1 ENSMUSG00000092853 ENSMUST00000175112 Gm25959 miRNA Interval_41741 chr12 118594921 118595673 + 0 NA Intergenic Intergenic -7380 ENSMUSG00000114034.1 ENSMUSG00000114034 ENSMUST00000222831 Gm9267 processed_pseudogene Interval_119542 chr4 138273820 138275234 + 0 NA intron (ENSMUSG00000028758.12, intron 3 of 11) protein_coding-intron (ENSMUSG00000028758.12, intron 3 of 14) 12055 ENSMUSG00000028758.12 ENSMUSG00000028758 ENSMUST00000105820 Kif17 protein_coding Interval_109254 chr3 138371020 138371734 + 0 NA Intergenic Intergenic -2813 ENSMUSG00000090306.5 ENSMUSG00000090306 ENSMUST00000196293 Adh6-ps1 transcribed_unprocessed_pseudogene Interval_4102 chr1 68302321 68302791 + 0 NA intron (ENSMUSG00000062209.15, intron 14 of 18) protein_coding-intron (ENSMUSG00000062209.15, intron 14 of 27) -8830 ENSMUSG00000083795.1 ENSMUSG00000083795 ENSMUST00000117740 Gm15670 processed_pseudogene Interval_72832 chr17 32450903 32453361 + 0 NA promoter-TSS (ENSMUSG00000061126.5) protein_coding-promoter-TSS (ENSMUSG00000061126.5) -591 ENSMUSG00000061126.5 ENSMUSG00000061126 ENSMUST00000235903 Cyp4f39 protein_coding Interval_70598 chr17 12218347 12219233 + 0 NA intron (ENSMUSG00000023827.8, intron 6 of 6) protein_coding-intron (ENSMUSG00000023827.8, intron 8 of 8) 28869 ENSMUSG00000063911.4 ENSMUSG00000063911 ENSMUST00000074412 Tdgf1-ps2 processed_pseudogene Interval_26371 chr11 57454312 57454958 + 0 NA Intergenic Intergenic 5528 ENSMUSG00000082476.1 ENSMUSG00000082476 ENSMUST00000118824 Gm12242 processed_pseudogene Interval_29217 chr11 81616448 81616823 + 0 NA intron (ENSMUSG00000020704.13, intron 1 of 9) protein_coding-intron (ENSMUSG00000020704.13, intron 1 of 9) 29274 ENSMUSG00000087534.1 ENSMUSG00000087534 ENSMUST00000156193 Gm11418 antisense Interval_158409 chr8 83575932 83576145 + 0 NA promoter-TSS (ENSMUSG00000110580.1) antisense-promoter-TSS (ENSMUSG00000110580.1) -6 ENSMUSG00000110580.1 ENSMUSG00000110580 ENSMUST00000212132 D830024N08Rik antisense Interval_109483 chr3 142848233 142848968 + 0 NA intron (ENSMUSG00000004591.16, intron 2 of 21) protein_coding-intron (ENSMUSG00000004591.16, intron 2 of 21) -32988 ENSMUSG00000106550.1 ENSMUSG00000106550 ENSMUST00000199962 Gm43646 processed_transcript Interval_141095 chr6 124938580 124940614 + 0 NA Intergenic Intergenic 8192 ENSMUSG00000030120.14 ENSMUSG00000030120 ENSMUST00000203060 Mlf2 protein_coding Interval_169139 chr9 94119904 94120916 + 0 NA Intergenic Intergenic -19052 ENSMUSG00000111352.1 ENSMUSG00000111352 ENSMUST00000217499 Gm5369 processed_pseudogene Interval_81947 chr18 66213683 66214048 + 0 NA intron (ENSMUSG00000117764.1, intron 1 of 1) protein_coding-intron (ENSMUSG00000046318.16, intron 2 of 11) 4423 ENSMUSG00000117764.1 ENSMUSG00000117764 ENSMUST00000236179 Gm50143 sense_intronic Interval_16268 chr10 61828102 61829791 + 0 NA Intergenic Intergenic 20265 ENSMUSG00000058806.15 ENSMUSG00000058806 ENSMUST00000153120 Col13a1 protein_coding Interval_74943 chr17 57658176 57659678 + 0 NA Intergenic Intergenic -82872 ENSMUSG00000117082.1 ENSMUSG00000117082 ENSMUST00000233731 Gm18139 processed_pseudogene Interval_86442 chr19 40548859 40549132 + 0 NA Intergenic Intergenic 12063 ENSMUSG00000096592.1 ENSMUSG00000096592 ENSMUST00000120920 Gm15801 processed_pseudogene Interval_93035 chr2 69692731 69694131 + 0 NA intron (ENSMUSG00000027086.16, intron 11 of 13) protein_coding-intron (ENSMUSG00000027086.16, intron 11 of 13) 20067 ENSMUSG00000027086.16 ENSMUSG00000027086 ENSMUST00000129260 Fastkd1 protein_coding Interval_15771 chr10 56378265 56379292 + 0 NA intron (ENSMUSG00000050953.10, intron 1 of 1) protein_coding-intron (ENSMUSG00000050953.10, intron 1 of 1) 1329 ENSMUSG00000050953.10 ENSMUSG00000050953 ENSMUST00000220069 Gja1 protein_coding Interval_172667 chrX 41924561 41924783 + 0 NA promoter-TSS (ENSMUSG00000080798.3) processed_pseudogene-promoter-TSS (ENSMUSG00000080798.3) -845 ENSMUSG00000080798.3 ENSMUSG00000080798 ENSMUST00000121100 Gm5135 processed_pseudogene Interval_46678 chr13 68642428 68644334 + 0 NA intron (ENSMUSG00000021536.7, intron 20 of 24) protein_coding-intron (ENSMUSG00000021536.7, intron 20 of 24) 45942 ENSMUSG00000021534.8 ENSMUSG00000021534 ENSMUST00000222604 1700001L19Rik protein_coding Interval_159291 chr8 92826547 92827811 + 0 NA promoter-TSS (ENSMUSG00000031740.8) protein_coding-promoter-TSS (ENSMUSG00000031740.8) -13005 ENSMUSG00000031740.8 ENSMUSG00000031740 ENSMUST00000211567 Mmp2 protein_coding Interval_135655 chr6 42357846 42358087 + 0 NA TTS (ENSMUSG00000029859.6) protein_coding-TTS (ENSMUSG00000029859.6) 2829 ENSMUSG00000029860.16 ENSMUSG00000029860 ENSMUST00000204480 Zyx protein_coding Interval_68938 chr16 89508140 89508383 + 0 NA promoter-TSS (ENSMUSG00000056706.3) protein_coding-promoter-TSS (ENSMUSG00000056706.3) 62 ENSMUSG00000056706.3 ENSMUSG00000056706 ENSMUST00000056118 Krtap7-1 protein_coding Interval_108574 chr3 129215780 129216234 + 0 NA intron (ENSMUSG00000028023.16, intron 4 of 4) protein_coding-intron (ENSMUSG00000028023.16, intron 4 of 4) 2075 ENSMUSG00000028023.16 ENSMUSG00000028023 ENSMUST00000174623 Pitx2 protein_coding Interval_111812 chr4 30929761 30930476 + 0 NA Intergenic Intergenic -227583 ENSMUSG00000082949.1 ENSMUSG00000082949 ENSMUST00000118491 Gm11920 processed_pseudogene Interval_174382 chrX 150966460 150966681 + 0 NA Intergenic Intergenic -39300 ENSMUSG00000081782.1 ENSMUSG00000081782 ENSMUST00000121540 Gm15152 processed_pseudogene Interval_169483 chr9 98187013 98187250 + 0 NA promoter-TSS (ENSMUSG00000046995.3) lincRNA-promoter-TSS (ENSMUSG00000046995.3) 22 ENSMUSG00000046995.3 ENSMUSG00000046995 ENSMUST00000061643 2610303G11Rik lincRNA Interval_143049 chr6 148918175 148919954 + 0 NA exon (ENSMUSG00000108258.1, exon 1 of 3) lincRNA-exon (ENSMUSG00000108258.1, exon 1 of 3) 1471 ENSMUSG00000108258.1 ENSMUSG00000108258 ENSMUST00000203924 Gm43913 lincRNA Interval_77681 chr17 94127064 94127579 + 0 NA Intergenic Intergenic 4950 ENSMUSG00000117543.1 ENSMUSG00000117543 ENSMUST00000235005 Gm50004 processed_pseudogene Interval_20061 chr10 112908866 112909410 + 0 NA Intergenic Intergenic -19363 ENSMUSG00000097185.1 ENSMUSG00000097185 ENSMUST00000180464 Gm26596 TEC Interval_65384 chr16 22046663 22047361 + 0 NA TTS (ENSMUSG00000022855.9) protein_coding-TTS (ENSMUSG00000022855.9) -6498 ENSMUSG00000068487.6 ENSMUSG00000068487 ENSMUST00000132879 Ndufa11b processed_pseudogene Interval_134753 chr6 31218034 31218561 + 0 NA promoter-TSS (ENSMUSG00000044471.12) lincRNA-promoter-TSS (ENSMUSG00000044471.12) -1931 ENSMUSG00000044471.12 ENSMUSG00000044471 ENSMUST00000229779 Lncpint lincRNA Interval_124694 chr5 53352675 53356097 + 0 NA Intergenic Intergenic -8014 ENSMUSG00000077696.1 ENSMUSG00000077696 ENSMUST00000104508 n-R5s172 rRNA Interval_65870 chr16 29942406 29942591 + 0 NA intron (ENSMUSG00000097313.2, intron 1 of 3) processed_transcript-intron (ENSMUSG00000097313.2, intron 1 of 3) 4256 ENSMUSG00000097313.2 ENSMUSG00000097313 ENSMUST00000232356 Gm26569 processed_transcript Interval_39015 chr12 84471693 84472154 + 0 NA intron (ENSMUSG00000085793.2, intron 4 of 4) protein_coding-intron (ENSMUSG00000085793.2, intron 5 of 5) -20975 ENSMUSG00000021238.11 ENSMUSG00000021238 ENSMUST00000222656 Aldh6a1 protein_coding Interval_158899 chr8 87821764 87822064 + 0 NA intron (ENSMUSG00000045333.15, intron 3 of 3) protein_coding-intron (ENSMUSG00000045333.15, intron 2 of 6) 131948 ENSMUSG00000045333.15 ENSMUSG00000045333 ENSMUST00000173092 Zfp423 protein_coding Interval_7980 chr1 135016872 135017231 + 0 NA intron (ENSMUSG00000042793.13, intron 2 of 4) protein_coding-intron (ENSMUSG00000042793.13, intron 6 of 17) 5040 ENSMUSG00000042793.13 ENSMUSG00000042793 ENSMUST00000139369 Lgr6 protein_coding Interval_2758 chr1 44234373 44235571 + 0 NA Intergenic Intergenic -16059 ENSMUSG00000046828.3 ENSMUSG00000046828 ENSMUST00000150062 Mettl21e protein_coding Interval_41523 chr12 115965808 115966205 + 0 NA Intergenic Intergenic -1756 ENSMUSG00000105757.1 ENSMUSG00000105757 ENSMUST00000199643 Ighv1-83 IG_V_pseudogene Interval_106194 chr3 94489874 94490094 + 0 NA TTS (ENSMUSG00000028137.9) protein_coding-TTS (ENSMUSG00000028137.9) 11490 ENSMUSG00000028137.9 ENSMUSG00000028137 ENSMUST00000197033 Celf3 protein_coding Interval_3929 chr1 64884478 64885530 + 0 NA intron (ENSMUSG00000051344.13, intron 3 of 4) protein_coding-intron (ENSMUSG00000051344.13, intron 4 of 7) -48240 ENSMUSG00000051344.13 ENSMUSG00000051344 ENSMUST00000134097 Plekhm3 protein_coding Interval_149496 chr7 99106718 99107985 + 0 NA intron (ENSMUSG00000035354.9, intron 3 of 11) protein_coding-intron (ENSMUSG00000035354.9, intron 3 of 14) 16108 ENSMUSG00000109073.1 ENSMUSG00000109073 ENSMUST00000207435 Gm44975 TEC Interval_83968 chr19 5848954 5850560 + 0 NA TTS (ENSMUSG00000024816.12) protein_coding-TTS (ENSMUSG00000024816.12) 4134 ENSMUSG00000043488.5 ENSMUSG00000043488 ENSMUST00000135347 Frmd8os antisense Interval_20324 chr10 116890118 116890893 + 0 NA intron (ENSMUSG00000034057.8, intron 1 of 24) protein_coding-intron (ENSMUSG00000034057.8, intron 1 of 24) 6414 ENSMUSG00000034057.8 ENSMUSG00000034057 ENSMUST00000048229 Myrfl protein_coding Interval_43183 chr13 24915314 24916090 + 0 NA intron (ENSMUSG00000035936.6, intron 7 of 9) protein_coding-intron (ENSMUSG00000035936.6, intron 7 of 9) 10082 ENSMUSG00000086796.2 ENSMUSG00000086796 ENSMUST00000225028 4932702P03Rik antisense Interval_98261 chr2 150635869 150636289 + 0 NA intron (ENSMUSG00000027452.11, intron 1 of 2) protein_coding-intron (ENSMUSG00000027452.11, intron 5 of 13) 2036 ENSMUSG00000027452.11 ENSMUSG00000027452 ENSMUST00000141785 Acss1 protein_coding Interval_51335 chr14 26507945 26508449 + 0 NA intron (ENSMUSG00000021870.17, intron 1 of 22) protein_coding-intron (ENSMUSG00000021870.17, intron 1 of 22) -6357 ENSMUSG00000078128.1 ENSMUSG00000078128 ENSMUST00000104927 Gm2178 processed_pseudogene Interval_35860 chr12 31281023 31281438 + 0 NA intron (ENSMUSG00000002900.17, intron 6 of 32) protein_coding-intron (ENSMUSG00000002900.17, intron 6 of 32) 15936 ENSMUSG00000002900.17 ENSMUSG00000002900 ENSMUST00000172134 Lamb1 protein_coding Interval_37439 chr12 68817998 68818365 + 0 NA Intergenic Intergenic -5884 ENSMUSG00000112933.1 ENSMUSG00000112933 ENSMUST00000223294 Gm47491 processed_pseudogene Interval_174643 chrX 161958299 161959152 + 0 NA intron (ENSMUSG00000059493.13, intron 1 of 8) protein_coding-intron (ENSMUSG00000059493.13, intron 1 of 7) 50502 ENSMUSG00000087571.1 ENSMUSG00000087571 ENSMUST00000154188 Gm15202 antisense Interval_126126 chr5 77801870 77802284 + 0 NA Intergenic Intergenic 107383 ENSMUSG00000106960.1 ENSMUSG00000106960 ENSMUST00000202676 Gm42673 processed_pseudogene Interval_53968 chr14 63908224 63908672 + 0 NA intron (ENSMUSG00000021958.5, intron 1 of 1) protein_coding-intron (ENSMUSG00000021958.5, intron 6 of 6) 8679 ENSMUSG00000021958.5 ENSMUSG00000021958 ENSMUST00000225564 Pinx1 protein_coding Interval_53392 chr14 56872918 56873871 + 0 NA Intergenic Intergenic 7981 ENSMUSG00000114500.1 ENSMUSG00000114500 ENSMUST00000224747 Gm8983 processed_pseudogene Interval_41201 chr12 111745163 111746623 + 0 NA intron (ENSMUSG00000037787.14, intron 4 of 5) protein_coding-intron (ENSMUSG00000037787.14, intron 4 of 5) -12956 ENSMUSG00000021288.19 ENSMUSG00000021288 ENSMUST00000147203 Klc1 protein_coding Interval_125300 chr5 66054320 66054856 + 0 NA promoter-TSS (ENSMUSG00000070780.11) protein_coding-promoter-TSS (ENSMUSG00000070780.11) 18307 ENSMUSG00000107304.1 ENSMUSG00000107304 ENSMUST00000201019 Gm43775 TEC Interval_140660 chr6 120354729 120354931 + 0 NA intron (ENSMUSG00000030177.14, intron 1 of 9) protein_coding-intron (ENSMUSG00000030177.14, intron 1 of 11) 2537 ENSMUSG00000030177.14 ENSMUSG00000030177 ENSMUST00000153435 Ccdc77 protein_coding Interval_128632 chr5 114410418 114411449 + 0 NA intron (ENSMUSG00000029577.13, intron 9 of 17) protein_coding-intron (ENSMUSG00000029577.13, intron 19 of 27) 6465 ENSMUSG00000098731.1 ENSMUSG00000098731 ENSMUST00000183408 Mir7027 miRNA Interval_126301 chr5 86318215 86319109 + 0 NA intron (ENSMUSG00000061259.11, intron 2 of 4) protein_coding-intron (ENSMUSG00000061259.11, intron 7 of 9) 9074 ENSMUSG00000061259.11 ENSMUSG00000061259 ENSMUST00000031175 Tmprss11d protein_coding Interval_106110 chr3 93283194 93283547 + 0 NA promoter-TSS (ENSMUSG00000102439.4) protein_coding-promoter-TSS (ENSMUSG00000102439.4) 5229 ENSMUSG00000081640.1 ENSMUSG00000081640 ENSMUST00000122125 Rplp0-ps1 processed_pseudogene Interval_114854 chr4 86369462 86369728 + 0 NA intron (ENSMUSG00000066113.16, intron 20 of 28) protein_coding-intron (ENSMUSG00000066113.16, intron 7 of 15) 72746 ENSMUSG00000083272.1 ENSMUSG00000083272 ENSMUST00000118478 Gm12550 processed_pseudogene Interval_33424 chr11 116476247 116477195 + 0 NA intron (ENSMUSG00000015869.16, intron 6 of 8) protein_coding-intron (ENSMUSG00000015869.16, intron 7 of 9) 10402 ENSMUSG00000086826.1 ENSMUSG00000086826 ENSMUST00000125269 Gm11739 antisense Interval_33335 chr11 115984957 115985257 + 0 NA intron (ENSMUSG00000020758.15, intron 12 of 39) protein_coding-intron (ENSMUSG00000020758.15, intron 13 of 40) 10382 ENSMUSG00000020758.15 ENSMUSG00000020758 ENSMUST00000130286 Itgb4 protein_coding Interval_5621 chr1 90283115 90284206 + 0 NA exon (ENSMUSG00000101028.1, exon 2 of 2) lincRNA-exon (ENSMUSG00000101028.1, exon 2 of 2) 3202 ENSMUSG00000101028.1 ENSMUSG00000101028 ENSMUST00000188640 Gm28723 lincRNA Interval_49223 chr13 109609663 109612629 + 0 NA intron (ENSMUSG00000021699.17, intron 1 of 14) protein_coding-intron (ENSMUSG00000021699.17, intron 1 of 14) 286402 ENSMUSG00000076946.2 ENSMUSG00000076946 ENSMUST00000103758 Mir582 miRNA Interval_54928 chr14 76302779 76303019 + 0 NA Intergenic Intergenic 51442 ENSMUSG00000115625.1 ENSMUSG00000115625 ENSMUST00000227933 2900040C04Rik lincRNA Interval_171463 chr9 118520951 118521953 + 0 NA intron (ENSMUSG00000038708.10, intron 2 of 11) protein_coding-intron (ENSMUSG00000038708.10, intron 2 of 23) -26956 ENSMUSG00000038708.10 ENSMUSG00000038708 ENSMUST00000211826 Golga4 protein_coding Interval_14976 chr10 41626372 41628101 + 0 NA exon (ENSMUSG00000075225.15, exon 21 of 48) protein_coding-exon (ENSMUSG00000075225.15, exon 21 of 48) -15917 ENSMUSG00000075225.15 ENSMUSG00000075225 ENSMUST00000190522 Ccdc162 protein_coding Interval_101954 chr3 13092576 13092753 + 0 NA Intergenic Intergenic 117305 ENSMUSG00000103735.1 ENSMUSG00000103735 ENSMUST00000195564 Gm38317 processed_pseudogene Interval_108752 chr3 131054474 131054906 + 0 NA Intergenic Intergenic -28320 ENSMUSG00000104859.1 ENSMUSG00000104859 ENSMUST00000197848 A430072C10Rik TEC Interval_168727 chr9 86453542 86454133 + 0 NA intron (ENSMUSG00000032415.14, intron 1 of 7) protein_coding-intron (ENSMUSG00000032415.14, intron 1 of 9) 11113 ENSMUSG00000032415.14 ENSMUSG00000032415 ENSMUST00000121189 Ube2cbp protein_coding Interval_159578 chr8 95593919 95594669 + 0 NA intron (ENSMUSG00000110447.1, intron 1 of 3) lincRNA-intron (ENSMUSG00000110447.1, intron 1 of 4) -7225 ENSMUSG00000110447.1 ENSMUSG00000110447 ENSMUST00000213069 Gm31518 lincRNA Interval_99871 chr2 165407724 165408339 + 0 NA intron (ENSMUSG00000018459.15, intron 1 of 1) protein_coding-intron (ENSMUSG00000018459.15, intron 12 of 12) -7626 ENSMUSG00000027670.4 ENSMUSG00000027670 ENSMUST00000029213 Ocstamp protein_coding Interval_53760 chr14 61565316 61565518 + 0 NA Intergenic Intergenic 6619 ENSMUSG00000114902.1 ENSMUSG00000114902 ENSMUST00000225750 Gm4118 processed_pseudogene Interval_16457 chr10 62985966 62986455 + 0 NA intron (ENSMUSG00000020070.18, intron 2 of 2) protein_coding-intron (ENSMUSG00000020070.18, intron 2 of 10) 4782 ENSMUSG00000020070.18 ENSMUSG00000020070 ENSMUST00000143726 Rufy2 protein_coding Interval_24721 chr11 36204553 36204786 + 0 NA intron (ENSMUSG00000049336.16, intron 7 of 28) protein_coding-intron (ENSMUSG00000049336.16, intron 7 of 28) -73372 ENSMUSG00000086375.1 ENSMUSG00000086375 ENSMUST00000123278 Gm12127 antisense Interval_136638 chr6 56875807 56876676 + 0 NA intron (ENSMUSG00000029781.7, intron 9 of 9) protein_coding-intron (ENSMUSG00000029781.7, intron 9 of 9) 26908 ENSMUSG00000029781.7 ENSMUSG00000029781 ENSMUST00000147159 Fkbp9 protein_coding Interval_54490 chr14 70195323 70196146 + 0 NA intron (ENSMUSG00000022091.6, intron 8 of 21) protein_coding-intron (ENSMUSG00000022091.6, intron 6 of 20) -9590 ENSMUSG00000115186.1 ENSMUSG00000115186 ENSMUST00000226259 Gm49417 antisense Interval_71558 chr17 24549382 24550832 + 0 NA exon (ENSMUSG00000032855.6, exon 1 of 46) protein_coding-exon (ENSMUSG00000032855.6, exon 1 of 46) 16193 ENSMUSG00000117423.1 ENSMUSG00000117423 ENSMUST00000234764 Gm33508 antisense Interval_126681 chr5 92025562 92025826 + 0 NA intron (ENSMUSG00000029403.14, intron 1 of 2) protein_coding-intron (ENSMUSG00000029403.14, intron 6 of 12) 18189 ENSMUSG00000029403.14 ENSMUSG00000029403 ENSMUST00000201895 Cdkl2 protein_coding Interval_113831 chr4 59199471 59200673 + 0 NA intron (ENSMUSG00000028381.8, intron 1 of 2) protein_coding-intron (ENSMUSG00000028381.8, intron 1 of 8) -12584 ENSMUSG00000028381.8 ENSMUSG00000028381 ENSMUST00000155153 Ugcg protein_coding Interval_125079 chr5 64323469 64323724 + 0 NA intron (ENSMUSG00000029174.18, intron 3 of 8) protein_coding-intron (ENSMUSG00000029174.18, intron 16 of 21) 3340 ENSMUSG00000083100.1 ENSMUSG00000083100 ENSMUST00000121819 Gm6044 processed_pseudogene Interval_111780 chr4 28691342 28692085 + 0 NA Intergenic Intergenic 79387 ENSMUSG00000081011.1 ENSMUSG00000081011 ENSMUST00000119094 Gm11913 processed_pseudogene Interval_53469 chr14 57707130 57707802 + 0 NA intron (ENSMUSG00000114942.1, intron 2 of 8) protein_coding-intron (ENSMUSG00000021959.16, intron 2 of 7) 9453 ENSMUSG00000092358.1 ENSMUSG00000092358 ENSMUST00000172474 Gm20430 processed_pseudogene Interval_10419 chr1 170674307 170674542 + 0 NA intron (ENSMUSG00000038463.8, intron 6 of 7) protein_coding-intron (ENSMUSG00000038463.8, intron 6 of 7) 29892 ENSMUSG00000038463.8 ENSMUSG00000038463 ENSMUST00000046792 Olfml2b protein_coding Interval_112827 chr4 45331831 45332910 + 0 NA intron (ENSMUSG00000028322.11, intron 1 of 3) protein_coding-intron (ENSMUSG00000028322.11, intron 1 of 3) 6664 ENSMUSG00000083541.1 ENSMUSG00000083541 ENSMUST00000117307 Gm12585 processed_pseudogene Interval_39392 chr12 87116686 87117211 + 0 NA intron (ENSMUSG00000034126.5, intron 14 of 19) protein_coding-intron (ENSMUSG00000034126.5, intron 14 of 20) -14426 ENSMUSG00000021032.13 ENSMUSG00000021032 ENSMUST00000110176 Ngb protein_coding Interval_91183 chr2 35719951 35721026 + 0 NA exon (ENSMUSG00000026883.17, exon 10 of 14) protein_coding-exon (ENSMUSG00000026883.17, exon 10 of 14) 10161 ENSMUSG00000026883.17 ENSMUSG00000026883 ENSMUST00000156669 Dab2ip protein_coding Interval_118628 chr4 132875009 132875326 + 0 NA intron (ENSMUSG00000028879.4, intron 1 of 8) protein_coding-intron (ENSMUSG00000028879.4, intron 1 of 8) -9596 ENSMUSG00000083816.3 ENSMUSG00000083816 ENSMUST00000117591 Gm13033 processed_pseudogene Interval_49259 chr13 109902186 109903977 + 0 NA promoter-TSS (ENSMUSG00000021699.17) protein_coding-promoter-TSS (ENSMUSG00000021699.17) -728 ENSMUSG00000084651.1 ENSMUSG00000084651 ENSMUST00000122702 Mir1904 miRNA Interval_9455 chr1 157310442 157311998 + 0 NA intron (ENSMUSG00000070565.11, intron 1 of 2) protein_coding-intron (ENSMUSG00000070565.11, intron 1 of 17) 38823 ENSMUSG00000102326.1 ENSMUSG00000102326 ENSMUST00000193958 Gm37788 TEC Interval_161112 chr8 117543638 117544501 + 0 NA intron (ENSMUSG00000034330.10, intron 2 of 32) protein_coding-intron (ENSMUSG00000034330.10, intron 2 of 32) 2957 ENSMUSG00000092818.2 ENSMUSG00000092818 ENSMUST00000175077 Gm27361 miRNA Interval_166381 chr9 58763958 58765249 + 0 NA Intergenic Intergenic -58809 ENSMUSG00000032338.9 ENSMUSG00000032338 ENSMUST00000034889 Hcn4 protein_coding Interval_92061 chr2 52938309 52939171 + 0 NA intron (ENSMUSG00000036053.17, intron 1 of 26) protein_coding-intron (ENSMUSG00000036053.17, intron 1 of 26) 80880 ENSMUSG00000036053.17 ENSMUSG00000036053 ENSMUST00000050719 Fmnl2 protein_coding Interval_102304 chr3 21543454 21543957 + 0 NA Intergenic Intergenic -60105 ENSMUSG00000106085.1 ENSMUSG00000106085 ENSMUST00000199468 Gm43675 unprocessed_pseudogene Interval_132176 chr5 143121861 143123429 + 0 NA Intergenic Intergenic -9665 ENSMUSG00000045078.12 ENSMUSG00000045078 ENSMUST00000200002 Rnf216 protein_coding Interval_105058 chr3 80650701 80651007 + 0 NA Intergenic Intergenic 41459 ENSMUSG00000093226.1 ENSMUSG00000093226 ENSMUST00000175485 Gm25749 miRNA Interval_36421 chr12 44280362 44280610 + 0 NA intron (ENSMUSG00000036257.15, intron 1 of 1) protein_coding-intron (ENSMUSG00000036257.15, intron 1 of 9) 11319 ENSMUSG00000036257.15 ENSMUSG00000036257 ENSMUST00000156082 Pnpla8 protein_coding Interval_142171 chr6 137779261 137779511 + 0 NA intron (ENSMUSG00000030225.11, intron 2 of 3) protein_coding-intron (ENSMUSG00000030225.11, intron 2 of 3) 34346 ENSMUSG00000030224.10 ENSMUSG00000030224 ENSMUST00000137235 Strap protein_coding Interval_39224 chr12 86023129 86023383 + 0 NA intron (ENSMUSG00000012609.19, intron 31 of 31) protein_coding-intron (ENSMUSG00000012609.19, intron 32 of 33) -44235 ENSMUSG00000097902.2 ENSMUSG00000097902 ENSMUST00000181727 Gm26531 antisense Interval_99903 chr2 165722110 165722382 + 0 NA intron (ENSMUSG00000017897.18, intron 2 of 6) protein_coding-intron (ENSMUSG00000017897.18, intron 7 of 15) -55389 ENSMUSG00000081758.1 ENSMUSG00000081758 ENSMUST00000118200 Gm11460 processed_pseudogene Interval_131820 chr5 140098822 140099213 + 0 NA intron (ENSMUSG00000029554.15, intron 14 of 16) protein_coding-intron (ENSMUSG00000029554.15, intron 15 of 17) -2182 ENSMUSG00000087606.1 ENSMUSG00000087606 ENSMUST00000128520 Gm16121 antisense Interval_44294 chr13 43421660 43422208 + 0 NA intron (ENSMUSG00000038546.9, intron 7 of 13) protein_coding-intron (ENSMUSG00000038546.9, intron 7 of 13) 3916 ENSMUSG00000065315.1 ENSMUSG00000065315 ENSMUST00000083381 Gm26064 snRNA Interval_46042 chr13 60537751 60538568 + 0 NA Intergenic Intergenic -8750 ENSMUSG00000080666.1 ENSMUSG00000080666 ENSMUST00000117016 Gm25000 miRNA Interval_153149 chr7 141658029 141658911 + 0 NA Intergenic Intergenic -3162 ENSMUSG00000048191.15 ENSMUSG00000048191 ENSMUST00000190907 Muc6 protein_coding Interval_148090 chr7 79168414 79168934 + 0 NA Intergenic Intergenic -20443 ENSMUSG00000030605.15 ENSMUSG00000030605 ENSMUST00000206844 Mfge8 protein_coding Interval_152498 chr7 133576182 133577463 + 0 NA Intergenic Intergenic 25336 ENSMUSG00000030976.3 ENSMUSG00000030976 ENSMUST00000033275 Tex36 protein_coding Interval_151575 chr7 124016103 124017062 + 0 NA intron (ENSMUSG00000078591.1, intron 1 of 1) protein_coding-intron (ENSMUSG00000078591.1, intron 1 of 1) -33128 ENSMUSG00000098129.1 ENSMUSG00000098129 ENSMUST00000181984 Gm27040 antisense Interval_162761 chr9 8695131 8695410 + 0 NA intron (ENSMUSG00000111602.1, intron 3 of 4) lincRNA-intron (ENSMUSG00000111602.1, intron 3 of 4) 45718 ENSMUSG00000111602.1 ENSMUSG00000111602 ENSMUST00000214779 Gm32014 lincRNA Interval_41843 chr13 3291050 3291955 + 0 NA Intergenic Intergenic -7385 ENSMUSG00000114003.1 ENSMUSG00000114003 ENSMUST00000221154 Gm9616 processed_pseudogene Interval_147948 chr7 75807475 75807796 + 0 NA Intergenic Intergenic 23603 ENSMUSG00000097116.1 ENSMUSG00000097116 ENSMUST00000180744 Gm26729 processed_pseudogene Interval_92819 chr2 65898321 65898508 + 0 NA intron (ENSMUSG00000044647.16, intron 2 of 2) protein_coding-intron (ENSMUSG00000044647.16, intron 2 of 5) -31723 ENSMUSG00000044647.16 ENSMUSG00000044647 ENSMUST00000112394 Csrnp3 protein_coding Interval_15995 chr10 59992308 59992501 + 0 NA intron (ENSMUSG00000020107.10, intron 1 of 2) protein_coding-intron (ENSMUSG00000020107.10, intron 3 of 4) 5906 ENSMUSG00000020107.10 ENSMUSG00000020107 ENSMUST00000183113 Anapc16 protein_coding Interval_83866 chr19 5178459 5179138 + 0 NA intron (ENSMUSG00000024855.10, intron 2 of 4) protein_coding-intron (ENSMUSG00000024855.10, intron 1 of 23) 22505 ENSMUSG00000098803.1 ENSMUSG00000098803 ENSMUST00000183577 Gm27468 miRNA Interval_139016 chr6 94213764 94214531 + 0 NA intron (ENSMUSG00000045095.16, intron 2 of 2) protein_coding-intron (ENSMUSG00000045095.16, intron 1 of 21) 109887 ENSMUSG00000107545.1 ENSMUSG00000107545 ENSMUST00000204466 Gm44307 processed_pseudogene Interval_73333 chr17 36257000 36258060 + 0 NA promoter-TSS (ENSMUSG00000024446.13) protein_coding-promoter-TSS (ENSMUSG00000024446.13) 325 ENSMUSG00000024446.13 ENSMUSG00000024446 ENSMUST00000174824 Rpp21 protein_coding Interval_162648 chr9 7261370 7262252 + 0 NA Intergenic Intergenic -10703 ENSMUSG00000050578.10 ENSMUSG00000050578 ENSMUST00000015394 Mmp13 protein_coding Interval_64775 chr16 15627510 15627886 + 0 NA exon (ENSMUSG00000022673.5, exon 13 of 16) protein_coding-exon (ENSMUSG00000022673.5, exon 13 of 16) 8560 ENSMUSG00000022673.5 ENSMUSG00000022673 ENSMUST00000230437 Mcm4 protein_coding Interval_107909 chr3 116726790 116727387 + 0 NA Intergenic Intergenic -14876 ENSMUSG00000027957.13 ENSMUSG00000027957 ENSMUST00000169530 Slc35a3 protein_coding Interval_112913 chr4 45989856 45990199 + 0 NA promoter-TSS (ENSMUSG00000035517.17) protein_coding-promoter-TSS (ENSMUSG00000035517.17) -36074 ENSMUSG00000035517.17 ENSMUSG00000035517 ENSMUST00000155936 Tdrd7 protein_coding Interval_77753 chr17 94885212 94885579 + 0 NA Intergenic Intergenic -15407 ENSMUSG00000065658.1 ENSMUSG00000065658 ENSMUST00000083724 Gm23102 snRNA Interval_57615 chr15 12842318 12843385 + 0 NA TTS (ENSMUSG00000104911.1) miRNA-TTS (ENSMUSG00000104911.1) 755 ENSMUSG00000104911.1 ENSMUSG00000104911 ENSMUST00000198820 Gm47288 miRNA Interval_120824 chr4 150854416 150855662 + 0 NA promoter-TSS (ENSMUSG00000028967.10) protein_coding-promoter-TSS (ENSMUSG00000028967.10) -34 ENSMUSG00000028967.10 ENSMUSG00000028967 ENSMUST00000030811 Errfi1 protein_coding Interval_165418 chr9 47650197 47650932 + 0 NA intron (ENSMUSG00000032076.20, intron 1 of 8) protein_coding-intron (ENSMUSG00000032076.20, intron 1 of 8) 120212 ENSMUSG00000032076.20 ENSMUSG00000032076 ENSMUST00000034581 Cadm1 protein_coding Interval_40467 chr12 105048314 105049067 + 0 NA Intergenic Intergenic 16002 ENSMUSG00000021102.4 ENSMUSG00000021102 ENSMUST00000220494 Glrx5 protein_coding Interval_71560 chr17 24564034 24564227 + 0 NA intron (ENSMUSG00000032855.6, intron 1 of 45) protein_coding-intron (ENSMUSG00000032855.6, intron 1 of 45) -23489 ENSMUSG00000032855.6 ENSMUSG00000032855 ENSMUST00000228581 Pkd1 protein_coding Interval_70628 chr17 12506774 12508376 + 0 NA promoter-TSS (ENSMUSG00000023828.3) protein_coding-promoter-TSS (ENSMUSG00000023828.3) -159 ENSMUSG00000023828.3 ENSMUSG00000023828 ENSMUST00000024595 Slc22a3 protein_coding Interval_122360 chr5 21683813 21684667 + 0 NA intron (ENSMUSG00000044968.16, intron 1 of 4) protein_coding-intron (ENSMUSG00000044968.16, intron 1 of 4) -5301 ENSMUSG00000081242.1 ENSMUSG00000081242 ENSMUST00000120619 Gm15719 processed_pseudogene Interval_128147 chr5 111287689 111288086 + 0 NA exon (ENSMUSG00000033209.17, exon 24 of 24) protein_coding-exon (ENSMUSG00000033209.17, exon 24 of 24) -12793 ENSMUSG00000099130.1 ENSMUSG00000099130 ENSMUST00000183861 Gm27602 misc_RNA Interval_161517 chr8 120887006 120887702 + 0 NA intron (ENSMUSG00000092329.1, intron 1 of 15) protein_coding-intron (ENSMUSG00000092329.1, intron 1 of 15) 7148 ENSMUSG00000097087.1 ENSMUSG00000097087 ENSMUST00000181778 Gm26878 lincRNA Interval_7762 chr1 133503488 133504917 + 0 NA Intergenic Intergenic -25277 ENSMUSG00000101004.1 ENSMUSG00000101004 ENSMUST00000188004 Gm8596 processed_pseudogene Interval_141478 chr6 128503518 128504393 + 0 NA TTS (ENSMUSG00000059659.7) antisense-TTS (ENSMUSG00000059659.7) -16100 ENSMUSG00000030359.14 ENSMUSG00000030359 ENSMUST00000143664 Pzp protein_coding Interval_100212 chr2 167679962 167681175 + 0 NA intron (ENSMUSG00000090213.1, intron 1 of 5) protein_coding-intron (ENSMUSG00000090213.1, intron 1 of 5) -8347 ENSMUSG00000056501.3 ENSMUSG00000056501 ENSMUST00000070642 Cebpb protein_coding Interval_132673 chr5 147071002 147071372 + 0 NA intron (ENSMUSG00000016520.7, intron 1 of 9) protein_coding-intron (ENSMUSG00000016520.7, intron 1 of 9) -6377 ENSMUSG00000029642.11 ENSMUSG00000029642 ENSMUST00000196288 Polr1d protein_coding Interval_145725 chr7 37820815 37821067 + 0 NA Intergenic Intergenic 3406 ENSMUSG00000064591.1 ENSMUSG00000064591 ENSMUST00000082657 Gm22302 snRNA Interval_111278 chr4 16954420 16955485 + 0 NA Intergenic Intergenic 78708 ENSMUSG00000082994.1 ENSMUSG00000082994 ENSMUST00000121207 Gm11848 processed_pseudogene Interval_57314 chr15 8697609 8698694 + 0 NA intron (ENSMUSG00000005360.14, intron 2 of 4) protein_coding-intron (ENSMUSG00000005360.14, intron 2 of 9) 12258 ENSMUSG00000005360.14 ENSMUSG00000005360 ENSMUST00000126747 Slc1a3 protein_coding Interval_88954 chr2 13486579 13486834 + 0 NA intron (ENSMUSG00000026726.10, intron 5 of 66) protein_coding-intron (ENSMUSG00000026726.10, intron 5 of 66) -31079 ENSMUSG00000026726.10 ENSMUSG00000026726 ENSMUST00000148506 Cubn protein_coding Interval_106631 chr3 97933984 97934560 + 0 NA intron (ENSMUSG00000074388.3, intron 1 of 1) lincRNA-intron (ENSMUSG00000074388.3, intron 1 of 1) 4099 ENSMUSG00000074388.3 ENSMUSG00000074388 ENSMUST00000098828 Gm5544 lincRNA Interval_43138 chr13 24596565 24597233 + 0 NA TTS (ENSMUSG00000085603.3) transcribed_processed_pseudogene-TTS (ENSMUSG00000085603.3) 7868 ENSMUSG00000085603.3 ENSMUSG00000085603 ENSMUST00000127863 Gm11346 transcribed_processed_pseudogene Interval_48704 chr13 101730489 101730853 + 0 NA intron (ENSMUSG00000041417.15, intron 2 of 15) protein_coding-intron (ENSMUSG00000041417.15, intron 2 of 15) 21217 ENSMUSG00000104214.1 ENSMUSG00000104214 ENSMUST00000192073 Gm36638 TEC Interval_42243 chr13 10732524 10732977 + 0 NA intron (ENSMUSG00000097009.2, intron 9 of 10) antisense-intron (ENSMUSG00000097009.2, intron 6 of 7) 32589 ENSMUSG00000114134.1 ENSMUSG00000114134 ENSMUST00000221855 Gm47408 lincRNA Interval_47333 chr13 81526472 81527160 + 0 NA intron (ENSMUSG00000069170.14, intron 24 of 34) protein_coding-intron (ENSMUSG00000069170.14, intron 28 of 89) 26014 ENSMUSG00000114454.1 ENSMUSG00000114454 ENSMUST00000224788 Gm48567 processed_pseudogene Interval_84107 chr19 7252677 7253216 + 0 NA Intergenic Intergenic 6237 ENSMUSG00000096774.1 ENSMUSG00000096774 ENSMUST00000158343 Gm22113 snRNA Interval_124269 chr5 43217580 43218273 + 0 NA intron (ENSMUSG00000085720.8, intron 1 of 5) antisense-intron (ENSMUSG00000085720.8, intron 1 of 7) 17059 ENSMUSG00000085720.8 ENSMUSG00000085720 ENSMUST00000140650 Gm7854 antisense Interval_39788 chr12 98331180 98331416 + 0 NA Intergenic Intergenic -51637 ENSMUSG00000112510.1 ENSMUSG00000112510 ENSMUST00000218404 Gm47566 antisense Interval_36162 chr12 37183435 37183912 + 0 NA Intergenic Intergenic 75133 ENSMUSG00000036144.6 ENSMUSG00000036144 ENSMUST00000041183 Meox2 protein_coding Interval_139360 chr6 99408364 99408647 + 0 NA intron (ENSMUSG00000030067.17, intron 2 of 3) protein_coding-intron (ENSMUSG00000030067.17, intron 1 of 18) -20006 ENSMUSG00000093559.1 ENSMUSG00000093559 ENSMUST00000177278 Gm20705 sense_intronic Interval_155666 chr8 35929359 35931222 + 0 NA Intergenic Intergenic 47288 ENSMUSG00000080592.1 ENSMUSG00000080592 ENSMUST00000116942 Gm22030 miRNA Interval_149828 chr7 101847935 101848536 + 0 NA intron (ENSMUSG00000032725.10, intron 2 of 5) protein_coding-intron (ENSMUSG00000032725.10, intron 2 of 5) -4724 ENSMUSG00000110295.1 ENSMUSG00000110295 ENSMUST00000210220 Gm45319 processed_pseudogene Interval_87530 chr19 53270934 53271250 + 0 NA Intergenic Intergenic 4461 ENSMUSG00000118350.1 ENSMUSG00000118350 ENSMUST00000237548 Gm36339 processed_pseudogene Interval_74974 chr17 58664703 58665317 + 0 NA Intergenic Intergenic 71396 ENSMUSG00000046952.9 ENSMUSG00000046952 ENSMUST00000050706 Gm5815 processed_pseudogene Interval_10296 chr1 168220861 168221876 + 0 NA intron (ENSMUSG00000052534.15, intron 2 of 7) protein_coding-intron (ENSMUSG00000052534.15, intron 2 of 6) 116303 ENSMUSG00000103780.1 ENSMUSG00000103780 ENSMUST00000192272 Gm37524 TEC Interval_2660 chr1 43065644 43066395 + 0 NA intron (ENSMUSG00000070939.9, intron 3 of 4) protein_coding-intron (ENSMUSG00000070939.9, intron 5 of 12) 9752 ENSMUSG00000100269.1 ENSMUSG00000100269 ENSMUST00000185980 Gm28782 antisense Interval_90216 chr2 29083677 29084092 + 0 NA intron (ENSMUSG00000026803.17, intron 9 of 10) protein_coding-intron (ENSMUSG00000026803.17, intron 10 of 11) -4782 ENSMUSG00000086519.1 ENSMUSG00000086519 ENSMUST00000141935 Gm13393 lincRNA Interval_160343 chr8 108606659 108607394 + 0 NA intron (ENSMUSG00000038872.10, intron 4 of 15) protein_coding-intron (ENSMUSG00000038872.10, intron 4 of 15) -22431 ENSMUSG00000110613.1 ENSMUSG00000110613 ENSMUST00000211953 Lncbate1 lincRNA Interval_173005 chrX 61709302 61710015 + 0 NA exon (ENSMUSG00000057615.5, exon 1 of 1) protein_coding-exon (ENSMUSG00000057615.5, exon 1 of 1) 161 ENSMUSG00000057615.5 ENSMUSG00000057615 ENSMUST00000075983 Ldoc1 protein_coding Interval_5372 chr1 88093862 88094854 + 0 NA promoter-TSS (ENSMUSG00000090124.7) protein_coding-promoter-TSS (ENSMUSG00000090124.7) -704 ENSMUSG00000090124.7 ENSMUSG00000090124 ENSMUST00000113135 Ugt1a7c protein_coding Interval_162893 chr9 11919890 11920688 + 0 NA Intergenic Intergenic 57960 ENSMUSG00000111111.1 ENSMUSG00000111111 ENSMUST00000217391 Gm47037 TEC Interval_2957 chr1 51632343 51632553 + 0 NA Intergenic Intergenic 65452 ENSMUSG00000101741.1 ENSMUSG00000101741 ENSMUST00000186769 Gm28055 lincRNA Interval_165259 chr9 45838219 45839165 + 0 NA promoter-TSS (ENSMUSG00000032086.12) protein_coding-promoter-TSS (ENSMUSG00000032086.12) -1757 ENSMUSG00000098194.1 ENSMUSG00000098194 ENSMUST00000182691 Gm7286 processed_pseudogene Interval_158308 chr8 80993727 80994084 + 0 NA intron (ENSMUSG00000038250.9, intron 5 of 9) protein_coding-intron (ENSMUSG00000038250.9, intron 5 of 9) 21008 ENSMUSG00000038250.9 ENSMUSG00000038250 ENSMUST00000211538 Usp38 protein_coding Interval_156536 chr8 50074088 50074353 + 0 NA Intergenic Intergenic -60836 ENSMUSG00000110375.1 ENSMUSG00000110375 ENSMUST00000209853 Gm45323 lincRNA Interval_160827 chr8 112972510 112972981 + 0 NA intron (ENSMUSG00000110455.1, intron 1 of 4) antisense-intron (ENSMUSG00000110455.1, intron 1 of 4) 32252 ENSMUSG00000110455.1 ENSMUSG00000110455 ENSMUST00000213082 Gm45904 antisense Interval_134782 chr6 31503153 31503385 + 0 NA intron (ENSMUSG00000025609.15, intron 3 of 3) protein_coding-intron (ENSMUSG00000025609.15, intron 17 of 17) 21042 ENSMUSG00000025608.9 ENSMUSG00000025608 ENSMUST00000136877 Podxl protein_coding Interval_111911 chr4 32489158 32489734 + 0 NA intron (ENSMUSG00000040270.16, intron 1 of 4) protein_coding-intron (ENSMUSG00000040270.16, intron 3 of 7) -25341 ENSMUSG00000084611.1 ENSMUSG00000084611 ENSMUST00000122662 Gm24371 misc_RNA Interval_164144 chr9 31971855 31972812 + 0 NA intron (ENSMUSG00000111771.1, intron 2 of 3) lincRNA-intron (ENSMUSG00000111771.1, intron 2 of 3) 23987 ENSMUSG00000111166.1 ENSMUSG00000111166 ENSMUST00000213734 Tpi-rs4 processed_pseudogene Interval_95031 chr2 103316651 103316848 + 0 NA Intergenic Intergenic -13829 ENSMUSG00000012350.15 ENSMUSG00000012350 ENSMUST00000128546 Ehf protein_coding Interval_67880 chr16 58546262 58546474 + 0 NA Intergenic Intergenic 9337 ENSMUSG00000116914.1 ENSMUSG00000116914 ENSMUST00000231586 Gm20942 processed_pseudogene Interval_41800 chr12 119510697 119511520 + 0 NA Intergenic Intergenic 56143 ENSMUSG00000114186.1 ENSMUSG00000114186 ENSMUST00000223043 Gm48681 lincRNA Interval_158623 chr8 84825736 84826546 + 0 NA intron (ENSMUSG00000053226.7, intron 1 of 1) protein_coding-intron (ENSMUSG00000053226.7, intron 1 of 1) -5381 ENSMUSG00000033751.5 ENSMUSG00000033751 ENSMUST00000036734 Gadd45gip1 protein_coding Interval_156931 chr8 61874093 61875517 + 0 NA intron (ENSMUSG00000086866.2, intron 2 of 2) protein_coding-intron (ENSMUSG00000058056.16, intron 2 of 19) -38255 ENSMUSG00000086866.2 ENSMUSG00000086866 ENSMUST00000211790 4930512H18Rik antisense Interval_173210 chrX 74244069 74247079 + 0 NA intron (ENSMUSG00000031328.16, intron 1 of 46) protein_coding-intron (ENSMUSG00000031328.16, intron 1 of 46) -4271 ENSMUSG00000031328.16 ENSMUSG00000031328 ENSMUST00000239316 Flna protein_coding Interval_6705 chr1 118889350 118889778 + 0 NA intron (ENSMUSG00000048402.14, intron 2 of 7) protein_coding-intron (ENSMUSG00000048402.14, intron 3 of 13) -64656 ENSMUSG00000098273.1 ENSMUSG00000098273 ENSMUST00000183982 Mir6346 miRNA Interval_69514 chr16 93979172 93979934 + 0 NA intron (ENSMUSG00000047109.13, intron 1 of 2) protein_coding-intron (ENSMUSG00000047109.13, intron 1 of 2) 3035 ENSMUSG00000116681.1 ENSMUSG00000116681 ENSMUST00000232110 Gm49618 sense_intronic Interval_77921 chr18 5581743 5582403 + 0 NA intron (ENSMUSG00000063087.15, intron 5 of 5) processed_transcript-intron (ENSMUSG00000063087.15, intron 2 of 2) -7018 ENSMUSG00000097926.1 ENSMUSG00000097926 ENSMUST00000181714 Gm26575 sense_intronic Interval_58139 chr15 28468519 28468706 + 0 NA intron (ENSMUSG00000022262.8, intron 78 of 78) protein_coding-intron (ENSMUSG00000022262.8, intron 78 of 78) 36579 ENSMUSG00000115473.1 ENSMUSG00000115473 ENSMUST00000228335 Gm49278 processed_pseudogene Interval_42932 chr13 21474236 21474452 + 0 NA Intergenic Intergenic -4627 ENSMUSG00000054931.7 ENSMUSG00000054931 ENSMUST00000225845 Zkscan4 protein_coding Interval_144768 chr7 28137521 28138028 + 0 NA exon (ENSMUSG00000078776.9, exon 3 of 3) protein_coding-exon (ENSMUSG00000078776.9, exon 3 of 3) 7958 ENSMUSG00000078776.9 ENSMUSG00000078776 ENSMUST00000150948 9530053A07Rik protein_coding Interval_45537 chr13 55706333 55706669 + 0 NA Intergenic Intergenic -11338 ENSMUSG00000021497.10 ENSMUSG00000021497 ENSMUST00000223649 Txndc15 protein_coding Interval_79241 chr18 27068268 27068542 + 0 NA Intergenic Intergenic 22051 ENSMUSG00000117346.1 ENSMUSG00000117346 ENSMUST00000234742 Gm7874 processed_pseudogene Interval_145366 chr7 34256228 34256651 + 0 NA exon (ENSMUSG00000066571.13, exon 6 of 13) protein_coding-exon (ENSMUSG00000066571.13, exon 6 of 13) -5084 ENSMUSG00000108737.1 ENSMUSG00000108737 ENSMUST00000207005 BC060293 TEC Interval_52460 chr14 46671722 46672103 + 0 NA exon (ENSMUSG00000115421.1, exon 1 of 2) processed_transcript-exon (ENSMUSG00000115421.1, exon 1 of 2) 187 ENSMUSG00000115421.1 ENSMUSG00000115421 ENSMUST00000227500 Gm48917 processed_transcript Interval_113109 chr4 48406627 48408347 + 0 NA intron (ENSMUSG00000028344.12, intron 11 of 16) protein_coding-intron (ENSMUSG00000028344.12, intron 11 of 16) -62257 ENSMUSG00000081953.1 ENSMUSG00000081953 ENSMUST00000118949 Gm12435 processed_pseudogene Interval_35576 chr12 24961885 24964188 + 0 NA exon (ENSMUSG00000020646.17, exon 12 of 12) protein_coding-exon (ENSMUSG00000020646.17, exon 12 of 12) -11957 ENSMUSG00000036333.11 ENSMUSG00000036333 ENSMUST00000222481 Kidins220 protein_coding Interval_120735 chr4 150340005 150340600 + 0 NA intron (ENSMUSG00000039852.17, intron 1 of 22) protein_coding-intron (ENSMUSG00000039852.17, intron 1 of 22) 19109 ENSMUSG00000089292.1 ENSMUSG00000089292 ENSMUST00000158667 Gm23209 snRNA Interval_30222 chr11 91087037 91088657 + 0 NA Intergenic Intergenic -226499 ENSMUSG00000083764.1 ENSMUSG00000083764 ENSMUST00000118450 Gm11516 processed_pseudogene Interval_22779 chr11 15410090 15410594 + 0 NA Intergenic Intergenic -1958 ENSMUSG00000064746.1 ENSMUSG00000064746 ENSMUST00000082812 Gm24707 snRNA Interval_21306 chr10 127818086 127818788 + 0 NA intron (ENSMUSG00000069456.4, intron 2 of 3) protein_coding-intron (ENSMUSG00000069456.4, intron 2 of 3) -5847 ENSMUSG00000054031.13 ENSMUSG00000054031 ENSMUST00000143917 Rdh18-ps transcribed_unprocessed_pseudogene Interval_3258 chr1 55212517 55214147 + 0 NA intron (ENSMUSG00000025978.14, intron 2 of 5) protein_coding-intron (ENSMUSG00000025978.14, intron 2 of 8) -12966 ENSMUSG00000097649.2 ENSMUSG00000097649 ENSMUST00000209801 Gm10561 antisense Interval_171027 chr9 113802062 113803048 + 0 NA intron (ENSMUSG00000033392.16, intron 1 of 4) protein_coding-intron (ENSMUSG00000033392.16, intron 7 of 15) -26257 ENSMUSG00000087992.1 ENSMUSG00000087992 ENSMUST00000157367 Gm25059 snoRNA Interval_132387 chr5 144643370 144643554 + 0 NA Intergenic Intergenic 80335 ENSMUSG00000082524.3 ENSMUSG00000082524 ENSMUST00000121256 Gm6272 processed_pseudogene Interval_159186 chr8 91474455 91474775 + 0 NA promoter-TSS (ENSMUSG00000110138.1) antisense-promoter-TSS (ENSMUSG00000110138.1) -17 ENSMUSG00000110138.1 ENSMUSG00000110138 ENSMUST00000211287 4831440D22Rik antisense Interval_23325 chr11 21395230 21396148 + 0 NA Intergenic Intergenic 25289 ENSMUSG00000087253.1 ENSMUSG00000087253 ENSMUST00000131570 Gm12043 processed_transcript Interval_94626 chr2 92805113 92806406 + 0 NA Intergenic Intergenic 63529 ENSMUSG00000085976.1 ENSMUSG00000085976 ENSMUST00000152230 Gm13816 lincRNA Interval_140426 chr6 117997097 117998352 + 0 NA exon (ENSMUSG00000082791.3, exon 1 of 1) processed_pseudogene-exon (ENSMUSG00000082791.3, exon 1 of 1) 517 ENSMUSG00000082791.3 ENSMUSG00000082791 ENSMUST00000118257 Gm4875 processed_pseudogene Interval_54219 chr14 66379899 66380345 + 0 NA Intergenic Intergenic 35826 ENSMUSG00000022044.14 ENSMUSG00000022044 ENSMUST00000147477 Stmn4 protein_coding Interval_43847 chr13 37546365 37547377 + 0 NA promoter-TSS (ENSMUSG00000114665.1) lincRNA-promoter-TSS (ENSMUSG00000114665.1) -907 ENSMUSG00000114665.1 ENSMUSG00000114665 ENSMUST00000225390 Lncbate6 lincRNA Interval_84386 chr19 10536898 10537568 + 0 NA exon (ENSMUSG00000034820.4, exon 7 of 7) protein_coding-exon (ENSMUSG00000034820.4, exon 7 of 7) 5406 ENSMUSG00000034820.4 ENSMUSG00000034820 ENSMUST00000236154 Cpsf7 protein_coding Interval_75643 chr17 69708406 69709396 + 0 NA Intergenic Intergenic 67111 ENSMUSG00000117124.1 ENSMUSG00000117124 ENSMUST00000233218 Gm49895 lincRNA Interval_49046 chr13 107338879 107339216 + 0 NA Intergenic Intergenic -9157 ENSMUSG00000114459.1 ENSMUSG00000114459 ENSMUST00000224355 Gm2736 processed_pseudogene Interval_108198 chr3 122432769 122435187 + 0 NA intron (ENSMUSG00000104574.1, intron 1 of 1) protein_coding-intron (ENSMUSG00000028121.8, intron 2 of 11) 14221 ENSMUSG00000028121.8 ENSMUSG00000028121 ENSMUST00000197959 Bcar3 protein_coding Interval_166665 chr9 61702482 61702987 + 0 NA Intergenic Intergenic -60350 ENSMUSG00000111739.1 ENSMUSG00000111739 ENSMUST00000213572 Gm47241 processed_pseudogene Interval_50784 chr14 19823139 19824370 + 0 NA promoter-TSS (ENSMUSG00000021807.6) protein_coding-promoter-TSS (ENSMUSG00000021807.6) -699 ENSMUSG00000021807.6 ENSMUSG00000021807 ENSMUST00000225615 Rtraf protein_coding Interval_156372 chr8 47772944 47773286 + 0 NA promoter-TSS (ENSMUSG00000110539.1) lincRNA-promoter-TSS (ENSMUSG00000110539.1) -440 ENSMUSG00000110539.1 ENSMUSG00000110539 ENSMUST00000211965 Gm45864 lincRNA Interval_69540 chr16 94114451 94114692 + 0 NA intron (ENSMUSG00000062713.8, intron 6 of 10) protein_coding-intron (ENSMUSG00000062713.8, intron 6 of 10) 29640 ENSMUSG00000062713.8 ENSMUSG00000062713 ENSMUST00000231295 Sim2 protein_coding Interval_52182 chr14 38542589 38543566 + 0 NA intron (ENSMUSG00000041014.17, intron 3 of 8) protein_coding-intron (ENSMUSG00000041014.17, intron 3 of 9) 21028 ENSMUSG00000093556.1 ENSMUSG00000093556 ENSMUST00000176069 Gm20641 antisense Interval_23295 chr11 21223596 21224140 + 0 NA Intergenic Intergenic -3787 ENSMUSG00000082898.1 ENSMUSG00000082898 ENSMUST00000121606 Gm12041 processed_pseudogene Interval_124449 chr5 47982747 47986519 + 0 NA promoter-TSS (ENSMUSG00000031558.15) protein_coding-promoter-TSS (ENSMUSG00000031558.15) 9628 ENSMUSG00000105994.1 ENSMUSG00000105994 ENSMUST00000198188 Gm43427 processed_pseudogene Interval_154261 chr8 13907238 13908741 + 0 NA intron (ENSMUSG00000038365.8, intron 1 of 10) protein_coding-intron (ENSMUSG00000038365.8, intron 1 of 9) 11678 ENSMUSG00000068631.8 ENSMUSG00000068631 ENSMUST00000084055 Gm7676 processed_pseudogene Interval_69784 chr16 96307517 96308308 + 0 NA intron (ENSMUSG00000074892.9, intron 2 of 2) protein_coding-intron (ENSMUSG00000074892.9, intron 1 of 2) 34438 ENSMUSG00000074892.9 ENSMUSG00000074892 ENSMUST00000099497 B3galt5 protein_coding Interval_54983 chr14 76660929 76661374 + 0 NA Intergenic Intergenic -16503 ENSMUSG00000101009.6 ENSMUSG00000101009 ENSMUST00000191384 1700108F19Rik processed_transcript Interval_26645 chr11 59434912 59435133 + 0 NA intron (ENSMUSG00000009894.15, intron 3 of 3) protein_coding-intron (ENSMUSG00000009894.15, intron 2 of 4) 14977 ENSMUSG00000009894.15 ENSMUSG00000009894 ENSMUST00000125846 Snap47 protein_coding Interval_124153 chr5 38696452 38698756 + 0 NA Intergenic Intergenic 2208 ENSMUSG00000077273.1 ENSMUSG00000077273 ENSMUST00000104085 Gm22779 snRNA Interval_12905 chr10 7911306 7911535 + 0 NA promoter-TSS (ENSMUSG00000015755.16) protein_coding-promoter-TSS (ENSMUSG00000015755.16) 44473 ENSMUSG00000015755.16 ENSMUSG00000015755 ENSMUST00000130322 Tab2 protein_coding Interval_164774 chr9 41599601 41599871 + 0 NA promoter-TSS (ENSMUSG00000074415.14) processed_transcript-promoter-TSS (ENSMUSG00000074415.14) 17810 ENSMUSG00000093354.1 ENSMUSG00000093354 ENSMUST00000175613 Mir125b-1 miRNA Interval_67886 chr16 58684753 58684979 + 0 NA intron (ENSMUSG00000022742.6, intron 1 of 1) protein_coding-intron (ENSMUSG00000022742.6, intron 1 of 1) 7027 ENSMUSG00000022742.6 ENSMUSG00000022742 ENSMUST00000231342 Cpox protein_coding Interval_13071 chr10 11080493 11082282 + 0 NA promoter-TSS (ENSMUSG00000019828.13) protein_coding-promoter-TSS (ENSMUSG00000019828.13) 863 ENSMUSG00000019828.13 ENSMUSG00000019828 ENSMUST00000156826 Grm1 protein_coding Interval_26475 chr11 58063760 58064195 + 0 NA intron (ENSMUSG00000086962.4, intron 8 of 8) protein_coding-intron (ENSMUSG00000086962.4, intron 6 of 6) 29157 ENSMUSG00000086962.4 ENSMUSG00000086962 ENSMUST00000137124 Gm12248 protein_coding Interval_70143 chr17 5770154 5771034 + 0 NA Intergenic Intergenic -28897 ENSMUSG00000096965.7 ENSMUSG00000096965 ENSMUST00000181392 3300005D01Rik lincRNA Interval_3199 chr1 54706796 54707130 + 0 NA intron (ENSMUSG00000101674.6, intron 1 of 2) protein_coding-intron (ENSMUSG00000052331.14, intron 16 of 27) 25234 ENSMUSG00000101674.6 ENSMUSG00000101674 ENSMUST00000188243 4930444A19Rik antisense Interval_4373 chr1 73362185 73362498 + 0 NA Intergenic Intergenic -29905 ENSMUSG00000098697.1 ENSMUSG00000098697 ENSMUST00000183977 Gm27315 misc_RNA Interval_53354 chr14 56575411 56575848 + 0 NA promoter-TSS (ENSMUSG00000054509.7) protein_coding-promoter-TSS (ENSMUSG00000054509.7) -23144 ENSMUSG00000064128.8 ENSMUSG00000064128 ENSMUST00000224748 Cenpj protein_coding Interval_23471 chr11 22814142 22814406 + 0 NA intron (ENSMUSG00000051650.11, intron 1 of 5) protein_coding-intron (ENSMUSG00000051650.11, intron 1 of 5) -25025 ENSMUSG00000092455.1 ENSMUSG00000092455 ENSMUST00000174690 Gm20456 processed_transcript Interval_48381 chr13 98631130 98631574 + 0 NA Intergenic Intergenic 6058 ENSMUSG00000046082.4 ENSMUSG00000046082 ENSMUST00000050389 Tmem174 protein_coding Interval_87327 chr19 47722946 47723132 + 0 NA TTS (ENSMUSG00000118149.1) lincRNA-TTS (ENSMUSG00000118149.1) 2004 ENSMUSG00000118149.1 ENSMUSG00000118149 ENSMUST00000235588 Gm50282 lincRNA Interval_87222 chr19 47014283 47015805 + 0 NA exon (ENSMUSG00000034336.3, exon 1 of 3) protein_coding-exon (ENSMUSG00000034336.3, exon 1 of 3) 346 ENSMUSG00000034336.3 ENSMUSG00000034336 ENSMUST00000037636 Ina protein_coding Interval_83881 chr19 5323895 5324283 + 0 NA promoter-TSS (ENSMUSG00000117807.1) processed_pseudogene-promoter-TSS (ENSMUSG00000117807.1) 75 ENSMUSG00000117807.1 ENSMUSG00000117807 ENSMUST00000235792 Gm7074 processed_pseudogene Interval_48004 chr13 95032240 95033677 + 0 NA TTS (ENSMUSG00000021684.17) protein_coding-TTS (ENSMUSG00000021684.17) 8657 ENSMUSG00000113070.1 ENSMUSG00000113070 ENSMUST00000220923 Gm48420 antisense Interval_37119 chr12 58594936 58596267 + 0 NA Intergenic Intergenic -168305 ENSMUSG00000112487.1 ENSMUSG00000112487 ENSMUST00000219517 Gm18873 processed_pseudogene Interval_158968 chr8 88306457 88306784 + 0 NA exon (ENSMUSG00000031659.13, exon 4 of 28) protein_coding-exon (ENSMUSG00000031659.13, exon 4 of 28) 6241 ENSMUSG00000031659.13 ENSMUSG00000031659 ENSMUST00000210688 Adcy7 protein_coding Interval_26200 chr11 55041092 55041788 + 0 NA Intergenic Intergenic -8025 ENSMUSG00000018340.13 ENSMUSG00000018340 ENSMUST00000148298 Anxa6 protein_coding Interval_100369 chr2 168679154 168680042 + 0 NA intron (ENSMUSG00000027546.15, intron 9 of 27) protein_coding-intron (ENSMUSG00000027546.15, intron 9 of 27) -38839 ENSMUSG00000105496.1 ENSMUSG00000105496 ENSMUST00000200215 Mir7004 miRNA Interval_170994 chr9 113587113 113587874 + 0 NA promoter-TSS (ENSMUSG00000109890.2) lincRNA-promoter-TSS (ENSMUSG00000109890.2) 54561 ENSMUSG00000111364.1 ENSMUSG00000111364 ENSMUST00000213455 Gm36745 lincRNA Interval_70861 chr17 15455176 15455653 + 0 NA Intergenic Intergenic -4391 ENSMUSG00000116985.1 ENSMUSG00000116985 ENSMUST00000231639 Gm49669 processed_pseudogene Interval_18193 chr10 83598592 83599117 + 0 NA Intergenic Intergenic 4276 ENSMUSG00000020263.14 ENSMUSG00000020263 ENSMUST00000176294 Appl2 protein_coding Interval_144252 chr7 23967678 23968961 + 0 NA Intergenic Intergenic 3179 ENSMUSG00000109065.1 ENSMUSG00000109065 ENSMUST00000208115 Gm5324 unprocessed_pseudogene Interval_145784 chr7 38255297 38255591 + 0 NA Intergenic Intergenic 15883 ENSMUSG00000030423.7 ENSMUSG00000030423 ENSMUST00000206045 Pop4 protein_coding Interval_54025 chr14 64594824 64596120 + 0 NA Intergenic Intergenic 4287 ENSMUSG00000092972.1 ENSMUSG00000092972 ENSMUST00000175231 Mir3078 miRNA Interval_55585 chr14 93890409 93891537 + 0 NA promoter-TSS (ENSMUSG00000055421.8) protein_coding-promoter-TSS (ENSMUSG00000055421.8) -304 ENSMUSG00000055421.8 ENSMUSG00000055421 ENSMUST00000194056 Pcdh9 protein_coding Interval_159897 chr8 104831294 104831676 + 0 NA promoter-TSS (ENSMUSG00000050097.6) protein_coding-promoter-TSS (ENSMUSG00000050097.6) -116 ENSMUSG00000050097.6 ENSMUSG00000050097 ENSMUST00000163042 Ces2b protein_coding Interval_146143 chr7 44326229 44327388 + 0 NA intron (ENSMUSG00000038738.15, intron 11 of 24) protein_coding-intron (ENSMUSG00000038738.15, intron 10 of 22) 12057 ENSMUSG00000108719.1 ENSMUSG00000108719 ENSMUST00000206373 Gm44757 TEC Interval_137438 chr6 72451473 72454181 + 0 NA Intergenic Intergenic -13284 ENSMUSG00000053907.10 ENSMUSG00000053907 ENSMUST00000206783 Mat2a protein_coding Interval_13873 chr10 24115736 24116282 + 0 NA Intergenic Intergenic -6475 ENSMUSG00000037424.6 ENSMUSG00000037424 ENSMUST00000041180 Taar9 protein_coding Interval_141241 chr6 126371673 126372178 + 0 NA Intergenic Intergenic 35058 ENSMUSG00000108163.1 ENSMUSG00000108163 ENSMUST00000203500 Gm44431 processed_pseudogene Interval_9013 chr1 153082823 153084043 + 0 NA intron (ENSMUSG00000042751.14, intron 5 of 8) protein_coding-intron (ENSMUSG00000042751.14, intron 4 of 10) 6074 ENSMUSG00000099969.1 ENSMUSG00000099969 ENSMUST00000190117 Gm28960 antisense Interval_110513 chr4 3420095 3420524 + 0 NA Intergenic Intergenic 33463 ENSMUSG00000083489.1 ENSMUSG00000083489 ENSMUST00000118568 Gm11784 unprocessed_pseudogene Interval_172203 chrX 9094697 9095809 + 0 NA Intergenic Intergenic -9309 ENSMUSG00000045797.1 ENSMUSG00000045797 ENSMUST00000059967 4930402K13Rik protein_coding Interval_89766 chr2 25289798 25293259 + 0 NA TTS (ENSMUSG00000026961.6) protein_coding-TTS (ENSMUSG00000026961.6) 308 ENSMUSG00000085830.1 ENSMUSG00000085830 ENSMUST00000129723 Grin1os antisense Interval_136830 chr6 61099301 61100186 + 0 NA Intergenic Intergenic -30488 ENSMUSG00000108087.1 ENSMUSG00000108087 ENSMUST00000203362 Gm43893 lincRNA Interval_43467 chr13 31615069 31616079 + 0 NA intron (ENSMUSG00000038408.14, intron 1 of 1) lincRNA-intron (ENSMUSG00000038408.14, intron 1 of 3) -3594 ENSMUSG00000087276.1 ENSMUSG00000087276 ENSMUST00000130966 Gm11378 lincRNA Interval_146675 chr7 49337608 49338167 + 0 NA intron (ENSMUSG00000052512.17, intron 1 of 6) protein_coding-intron (ENSMUSG00000052512.17, intron 1 of 37) -5587 ENSMUSG00000052512.17 ENSMUSG00000052512 ENSMUST00000183715 Nav2 protein_coding Interval_47655 chr13 90839608 90841786 + 0 NA Intergenic Intergenic -26909 ENSMUSG00000114589.1 ENSMUSG00000114589 ENSMUST00000224274 Gm18518 processed_pseudogene Interval_8933 chr1 152413171 152415440 + 0 NA intron (ENSMUSG00000032649.14, intron 1 of 13) protein_coding-intron (ENSMUSG00000032649.14, intron 1 of 11) -6780 ENSMUSG00000080878.1 ENSMUSG00000080878 ENSMUST00000121610 Gm15618 processed_pseudogene Interval_110033 chr3 152679042 152679428 + 0 NA intron (ENSMUSG00000097745.1, intron 3 of 3) antisense-intron (ENSMUSG00000097745.1, intron 3 of 3) 12322 ENSMUSG00000097745.1 ENSMUSG00000097745 ENSMUST00000181093 AI115009 antisense Interval_53764 chr14 61597797 61599793 + 0 NA promoter-TSS (ENSMUSG00000035235.13) protein_coding-promoter-TSS (ENSMUSG00000035235.13) 548 ENSMUSG00000035235.13 ENSMUSG00000035235 ENSMUST00000039562 Trim13 protein_coding Interval_60241 chr15 68938966 68939747 + 0 NA intron (ENSMUSG00000022332.8, intron 1 of 4) protein_coding-intron (ENSMUSG00000022332.8, intron 1 of 8) 10659 ENSMUSG00000022332.8 ENSMUSG00000022332 ENSMUST00000230073 Khdrbs3 protein_coding Interval_50639 chr14 17024428 17026285 + 0 NA Intergenic Intergenic 71750 ENSMUSG00000114202.1 ENSMUSG00000114202 ENSMUST00000224816 Gm18078 processed_pseudogene Interval_76764 chr17 83895255 83895710 + 0 NA Intergenic Intergenic -22455 ENSMUSG00000117442.1 ENSMUSG00000117442 ENSMUST00000234364 1810073O08Rik lincRNA Interval_98541 chr2 153101789 153102252 + 0 NA Intergenic Intergenic -6448 ENSMUSG00000003283.15 ENSMUSG00000003283 ENSMUST00000003370 Hck protein_coding Interval_35784 chr12 29530537 29530719 + 0 NA exon (ENSMUSG00000061911.15, exon 1 of 1) protein_coding-exon (ENSMUSG00000061911.15, exon 1 of 1) 487 ENSMUSG00000112390.1 ENSMUSG00000112390 ENSMUST00000218104 Gm20208 processed_transcript Interval_102670 chr3 29370593 29370813 + 0 NA intron (ENSMUSG00000063600.14, intron 5 of 14) protein_coding-intron (ENSMUSG00000063600.14, intron 4 of 12) -46120 ENSMUSG00000076120.1 ENSMUSG00000076120 ENSMUST00000102165 Mir551b miRNA Interval_2569 chr1 40543126 40544371 + 0 NA intron (ENSMUSG00000026068.11, intron 2 of 2) protein_coding-intron (ENSMUSG00000026068.11, intron 11 of 12) 28343 ENSMUSG00000026068.11 ENSMUSG00000026068 ENSMUST00000160468 Il18rap protein_coding Interval_13650 chr10 20410236 20410719 + 0 NA intron (ENSMUSG00000019990.15, intron 11 of 13) protein_coding-intron (ENSMUSG00000019990.15, intron 10 of 12) 36414 ENSMUSG00000019990.15 ENSMUSG00000019990 ENSMUST00000166147 Pde7b protein_coding Interval_7585 chr1 132341688 132342879 + 0 NA intron (ENSMUSG00000100658.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000100658.1, intron 1 of 2) 260 ENSMUSG00000100658.1 ENSMUSG00000100658 ENSMUST00000189288 F730311O21Rik lincRNA Interval_7644 chr1 132765204 132766310 + 0 NA Intergenic Intergenic 36402 ENSMUSG00000101126.1 ENSMUSG00000101126 ENSMUST00000189499 Gm10538 antisense Interval_111616 chr4 24595566 24596621 + 0 NA intron (ENSMUSG00000045751.16, intron 15 of 18) protein_coding-intron (ENSMUSG00000045751.16, intron 19 of 22) 99642 ENSMUSG00000045751.16 ENSMUSG00000045751 ENSMUST00000123984 Mms22l protein_coding Interval_79163 chr18 25194449 25194871 + 0 NA intron (ENSMUSG00000033632.16, intron 4 of 11) protein_coding-intron (ENSMUSG00000033632.16, intron 4 of 9) 25640 ENSMUSG00000033632.16 ENSMUSG00000033632 ENSMUST00000100131 AW554918 protein_coding Interval_68769 chr16 85912124 85912362 + 0 NA Intergenic Intergenic -10415 ENSMUSG00000022894.6 ENSMUSG00000022894 ENSMUST00000023611 Adamts5 protein_coding Interval_116531 chr4 115079232 115080349 + 0 NA Intergenic Intergenic -8918 ENSMUSG00000028716.15 ENSMUSG00000028716 ENSMUST00000146578 Pdzk1ip1 protein_coding Interval_44440 chr13 44851260 44852254 + 0 NA intron (ENSMUSG00000038518.15, intron 3 of 5) protein_coding-intron (ENSMUSG00000038518.15, intron 4 of 18) -13474 ENSMUSG00000088189.1 ENSMUSG00000088189 ENSMUST00000157564 Gm22213 snoRNA Interval_103679 chr3 51583427 51584020 + 0 NA TTS (ENSMUSG00000104075.1) TEC-TTS (ENSMUSG00000104075.1) 1417 ENSMUSG00000104075.1 ENSMUSG00000104075 ENSMUST00000193978 5430433H01Rik TEC Interval_51814 chr14 32405165 32405632 + 0 NA Intergenic Intergenic -17007 ENSMUSG00000072473.4 ENSMUSG00000072473 ENSMUST00000100723 1700024G13Rik protein_coding Interval_9180 chr1 154792095 154792385 + 0 NA intron (ENSMUSG00000004110.17, intron 1 of 3) protein_coding-intron (ENSMUSG00000004110.17, intron 1 of 3) 24701 ENSMUSG00000004110.17 ENSMUSG00000004110 ENSMUST00000186256 Cacna1e protein_coding Interval_165456 chr9 48276894 48277416 + 0 NA intron (ENSMUSG00000044229.9, intron 2 of 8) protein_coding-intron (ENSMUSG00000044229.9, intron 1 of 10) 63699 ENSMUSG00000032028.15 ENSMUSG00000032028 ENSMUST00000142667 Nxpe2 protein_coding Interval_134337 chr6 25688414 25690605 + 0 NA exon (ENSMUSG00000039904.9, exon 1 of 2) protein_coding-exon (ENSMUSG00000039904.9, exon 1 of 2) 283 ENSMUSG00000039904.9 ENSMUSG00000039904 ENSMUST00000054867 Gpr37 protein_coding Interval_4920 chr1 82617062 82617306 + 0 NA intron (ENSMUSG00000079465.8, intron 1 of 1) protein_coding-intron (ENSMUSG00000079465.8, intron 1 of 51) -17829 ENSMUSG00000065055.1 ENSMUSG00000065055 ENSMUST00000083121 n-R5s213 rRNA Interval_8844 chr1 151485832 151486364 + 0 NA intron (ENSMUSG00000026484.13, intron 1 of 3) protein_coding-intron (ENSMUSG00000026484.13, intron 1 of 6) -9936 ENSMUSG00000026484.13 ENSMUSG00000026484 ENSMUST00000187991 Rnf2 protein_coding Interval_70544 chr17 11870852 11871063 + 0 NA intron (ENSMUSG00000023826.16, intron 8 of 10) protein_coding-intron (ENSMUSG00000023826.16, intron 9 of 11) -138612 ENSMUSG00000104466.1 ENSMUSG00000104466 ENSMUST00000194203 Gm10513 TEC Interval_167680 chr9 71877970 71878197 + 0 NA intron (ENSMUSG00000032228.16, intron 12 of 19) protein_coding-intron (ENSMUSG00000032228.16, intron 12 of 19) 21370 ENSMUSG00000102939.1 ENSMUSG00000102939 ENSMUST00000194817 Gm38111 TEC Interval_115563 chr4 100806594 100806858 + 0 NA intron (ENSMUSG00000028532.14, intron 1 of 26) protein_coding-intron (ENSMUSG00000028532.14, intron 1 of 26) -187984 ENSMUSG00000028532.14 ENSMUSG00000028532 ENSMUST00000136430 Cachd1 protein_coding Interval_69722 chr16 95809521 95809890 + 0 NA intron (ENSMUSG00000117232.1, intron 2 of 4) lincRNA-intron (ENSMUSG00000117232.1, intron 2 of 4) -1388 ENSMUSG00000085329.1 ENSMUSG00000085329 ENSMUST00000156615 2810404F17Rik lincRNA Interval_88922 chr2 12938517 12938909 + 0 NA intron (ENSMUSG00000026730.12, intron 1 of 1) protein_coding-intron (ENSMUSG00000026730.12, intron 1 of 4) -39226 ENSMUSG00000026730.12 ENSMUSG00000026730 ENSMUST00000195521 Pter protein_coding Interval_153805 chr8 8751111 8752077 + 0 NA intron (ENSMUSG00000109062.1, intron 2 of 2) lincRNA-intron (ENSMUSG00000109371.1, intron 2 of 4) 15624 ENSMUSG00000109062.1 ENSMUSG00000109062 ENSMUST00000209128 Gm44622 lincRNA Interval_130909 chr5 133898051 133898763 + 0 NA Intergenic Intergenic 21595 ENSMUSG00000104893.1 ENSMUSG00000104893 ENSMUST00000196197 Gm2404 processed_pseudogene Interval_39497 chr12 88605787 88606400 + 0 NA Intergenic Intergenic -15656 ENSMUSG00000113213.1 ENSMUSG00000113213 ENSMUST00000221843 Gm19540 processed_pseudogene Interval_24551 chr11 34314462 34315832 + 0 NA intron (ENSMUSG00000069911.11, intron 1 of 3) protein_coding-intron (ENSMUSG00000069911.11, intron 1 of 4) 389 ENSMUSG00000069911.11 ENSMUSG00000069911 ENSMUST00000093192 Insyn2b protein_coding Interval_20807 chr10 121149642 121150467 + 0 NA Intergenic Intergenic 11475 ENSMUSG00000112431.1 ENSMUSG00000112431 ENSMUST00000218151 Gm10741 TEC Interval_171763 chr9 120818736 120819202 + 0 NA Intergenic Intergenic -15394 ENSMUSG00000111720.1 ENSMUSG00000111720 ENSMUST00000215662 Gm39459 lincRNA Interval_57084 chr15 5933156 5934457 + 0 NA Intergenic Intergenic -17638 ENSMUSG00000115342.1 ENSMUSG00000115342 ENSMUST00000226154 Gm49095 processed_pseudogene Interval_133256 chr5 150893640 150895070 + 0 NA Intergenic Intergenic -11713 ENSMUSG00000107047.1 ENSMUSG00000107047 ENSMUST00000200887 Gm43298 lincRNA Interval_60883 chr15 77474119 77475056 + 0 NA Intergenic Intergenic -2460 ENSMUSG00000050982.13 ENSMUSG00000050982 ENSMUST00000060551 Apol10a protein_coding Interval_96548 chr2 125586775 125586964 + 0 NA intron (ENSMUSG00000068394.4, intron 17 of 27) protein_coding-intron (ENSMUSG00000068394.4, intron 17 of 27) 38244 ENSMUSG00000068394.4 ENSMUSG00000068394 ENSMUST00000089776 Cep152 protein_coding Interval_10091 chr1 165735646 165736653 + 0 NA promoter-TSS (ENSMUSG00000103242.1) processed_pseudogene-promoter-TSS (ENSMUSG00000103242.1) -488 ENSMUSG00000103242.1 ENSMUSG00000103242 ENSMUST00000191813 Gm34767 processed_pseudogene Interval_82354 chr18 72269705 72270269 + 0 NA intron (ENSMUSG00000060534.16, intron 1 of 1) protein_coding-intron (ENSMUSG00000060534.16, intron 1 of 28) 81054 ENSMUSG00000060534.16 ENSMUSG00000060534 ENSMUST00000126030 Dcc protein_coding Interval_91060 chr2 34753762 34755295 + 0 NA promoter-TSS (ENSMUSG00000026867.18) protein_coding-promoter-TSS (ENSMUSG00000026867.18) -19138 ENSMUSG00000026864.13 ENSMUSG00000026864 ENSMUST00000129333 Hspa5 protein_coding Interval_37350 chr12 65367636 65368890 + 0 NA Intergenic Intergenic 37707 ENSMUSG00000077590.1 ENSMUSG00000077590 ENSMUST00000104402 Gm26015 snoRNA Interval_155577 chr8 34743037 34743258 + 0 NA Intergenic Intergenic -64150 ENSMUSG00000031530.6 ENSMUSG00000031530 ENSMUST00000033930 Dusp4 protein_coding Interval_129129 chr5 117599526 117599765 + 0 NA intron (ENSMUSG00000061578.8, intron 4 of 20) protein_coding-intron (ENSMUSG00000061578.8, intron 4 of 20) 78946 ENSMUSG00000107199.1 ENSMUSG00000107199 ENSMUST00000201553 Gm42550 TEC Interval_142826 chr6 146236656 146237569 + 0 NA intron (ENSMUSG00000030287.15, intron 38 of 55) protein_coding-intron (ENSMUSG00000030287.15, intron 39 of 56) -4633 ENSMUSG00000030287.15 ENSMUSG00000030287 ENSMUST00000111673 Itpr2 protein_coding Interval_159738 chr8 99696215 99696419 + 0 NA intron (ENSMUSG00000052479.5, intron 4 of 4) lincRNA-intron (ENSMUSG00000052479.5, intron 4 of 4) 32298 ENSMUSG00000083586.2 ENSMUSG00000083586 ENSMUST00000118240 Gm8688 unprocessed_pseudogene Interval_33059 chr11 113993652 113993898 + 0 NA intron (ENSMUSG00000041592.16, intron 1 of 11) protein_coding-intron (ENSMUSG00000041592.16, intron 1 of 44) -97631 ENSMUSG00000086760.1 ENSMUSG00000086760 ENSMUST00000129365 1700025D23Rik lincRNA Interval_29467 chr11 84179073 84180469 + 0 NA promoter-TSS (ENSMUSG00000020532.18) protein_coding-promoter-TSS (ENSMUSG00000020532.18) -9822 ENSMUSG00000103122.1 ENSMUSG00000103122 ENSMUST00000194891 Gm37391 TEC Interval_16846 chr10 69186200 69186704 + 0 NA intron (ENSMUSG00000019944.14, intron 2 of 4) protein_coding-intron (ENSMUSG00000019944.14, intron 2 of 4) 26646 ENSMUSG00000090622.1 ENSMUSG00000090622 ENSMUST00000170048 A930033H14Rik protein_coding Interval_108547 chr3 128446009 128446558 + 0 NA Intergenic Intergenic -94089 ENSMUSG00000065248.1 ENSMUSG00000065248 ENSMUST00000083314 Gm22293 snoRNA Interval_12497 chr1 194412624 194412898 + 0 NA Intergenic Intergenic -190002 ENSMUSG00000103692.1 ENSMUSG00000103692 ENSMUST00000193395 4930503O07Rik lincRNA Interval_168366 chr9 79717500 79720420 + 0 NA promoter-TSS (ENSMUSG00000032332.17) protein_coding-promoter-TSS (ENSMUSG00000032332.17) -240 ENSMUSG00000032332.17 ENSMUSG00000032332 ENSMUST00000141667 Col12a1 protein_coding Interval_105750 chr3 89136367 89137409 + 0 NA intron (ENSMUSG00000041237.12, intron 1 of 3) protein_coding-intron (ENSMUSG00000041237.12, intron 1 of 10) 714 ENSMUSG00000041237.12 ENSMUSG00000041237 ENSMUST00000148097 Pklr protein_coding Interval_50958 chr14 21115641 21116632 + 0 NA intron (ENSMUSG00000039197.10, intron 3 of 6) protein_coding-intron (ENSMUSG00000039197.10, intron 3 of 10) 63519 ENSMUSG00000039197.10 ENSMUSG00000039197 ENSMUST00000224974 Adk protein_coding Interval_46620 chr13 67651701 67653106 + 0 NA Intergenic Intergenic -6266 ENSMUSG00000114264.1 ENSMUSG00000114264 ENSMUST00000225507 Gm48095 antisense Interval_69985 chr17 3878264 3879800 + 0 NA Intergenic Intergenic -182771 ENSMUSG00000023802.4 ENSMUSG00000023802 ENSMUST00000115800 Nox3 protein_coding Interval_102432 chr3 25657998 25658252 + 0 NA intron (ENSMUSG00000063887.13, intron 5 of 7) protein_coding-intron (ENSMUSG00000063887.13, intron 3 of 5) 42178 ENSMUSG00000102397.1 ENSMUSG00000102397 ENSMUST00000193993 Gm37573 sense_intronic Interval_32210 chr11 106186705 106187868 + 0 NA promoter-TSS (ENSMUSG00000088702.1) snRNA-promoter-TSS (ENSMUSG00000088702.1) -699 ENSMUSG00000088702.1 ENSMUSG00000088702 ENSMUST00000158077 Gm25556 snRNA Interval_52636 chr14 48159555 48160522 + 0 NA intron (ENSMUSG00000021846.9, intron 1 of 2) protein_coding-intron (ENSMUSG00000021846.9, intron 1 of 5) -24968 ENSMUSG00000021846.9 ENSMUSG00000021846 ENSMUST00000081029 Peli2 protein_coding Interval_115979 chr4 106757203 106758030 + 0 NA intron (ENSMUSG00000034853.16, intron 6 of 13) protein_coding-intron (ENSMUSG00000034853.16, intron 8 of 15) -17200 ENSMUSG00000081110.1 ENSMUSG00000081110 ENSMUST00000121767 Gm12745 processed_pseudogene Interval_91174 chr2 35660828 35663372 + 0 NA intron (ENSMUSG00000026883.17, intron 1 of 3) protein_coding-intron (ENSMUSG00000026883.17, intron 3 of 15) -48227 ENSMUSG00000026883.17 ENSMUSG00000026883 ENSMUST00000156669 Dab2ip protein_coding Interval_156134 chr8 45023833 45024514 + 0 NA exon (ENSMUSG00000070047.14, exon 9 of 26) protein_coding-exon (ENSMUSG00000070047.14, exon 9 of 26) -1788 ENSMUSG00000097491.1 ENSMUSG00000097491 ENSMUST00000180753 Gm2366 antisense Interval_108096 chr3 121478813 121479360 + 0 NA intron (ENSMUSG00000039865.8, intron 12 of 14) protein_coding-intron (ENSMUSG00000039865.8, intron 12 of 14) 21973 ENSMUSG00000053931.11 ENSMUSG00000053931 ENSMUST00000199499 Cnn3 protein_coding Interval_131252 chr5 136009343 136010025 + 0 NA intron (ENSMUSG00000004947.15, intron 3 of 3) protein_coding-intron (ENSMUSG00000004947.15, intron 2 of 10) 14837 ENSMUSG00000004947.15 ENSMUSG00000004947 ENSMUST00000142041 Dtx2 protein_coding Interval_118332 chr4 130327509 130328236 + 0 NA intron (ENSMUSG00000028772.19, intron 4 of 5) protein_coding-intron (ENSMUSG00000028772.19, intron 6 of 7) -19199 ENSMUSG00000073752.2 ENSMUSG00000073752 ENSMUST00000097865 Gm10570 antisense Interval_89835 chr2 25865390 25865615 + 0 NA intron (ENSMUSG00000058740.14, intron 1 of 30) protein_coding-intron (ENSMUSG00000058740.14, intron 1 of 2) 1534 ENSMUSG00000058740.14 ENSMUSG00000058740 ENSMUST00000199269 Kcnt1 protein_coding Interval_107617 chr3 108901715 108903367 + 0 NA TTS (ENSMUSG00000027881.14) protein_coding-TTS (ENSMUSG00000027881.14) 8927 ENSMUSG00000027881.14 ENSMUSG00000027881 ENSMUST00000197805 Prpf38b protein_coding Interval_111356 chr4 19647860 19648323 + 0 NA intron (ENSMUSG00000078772.2, intron 4 of 4) protein_coding-intron (ENSMUSG00000041058.15, intron 7 of 22) 42640 ENSMUSG00000078772.2 ENSMUSG00000078772 ENSMUST00000108250 Gm12353 protein_coding Interval_43384 chr13 29945870 29946184 + 0 NA intron (ENSMUSG00000016477.18, intron 1 of 6) protein_coding-intron (ENSMUSG00000016477.18, intron 1 of 6) 5744 ENSMUSG00000086893.1 ENSMUSG00000086893 ENSMUST00000144277 Gm11365 antisense Interval_39521 chr12 89259905 89260684 + 0 NA exon (ENSMUSG00000066392.12, exon 6 of 20) protein_coding-exon (ENSMUSG00000066392.12, exon 6 of 20) -4933 ENSMUSG00000103136.1 ENSMUSG00000103136 ENSMUST00000194420 Gm37980 TEC Interval_105202 chr3 83795989 83796217 + 0 NA Intergenic Intergenic -3865 ENSMUSG00000104082.2 ENSMUSG00000104082 ENSMUST00000193706 Gm7115 unprocessed_pseudogene Interval_126342 chr5 86836072 86836374 + 0 NA TTS (ENSMUSG00000035851.14) protein_coding-TTS (ENSMUSG00000035851.14) 27283 ENSMUSG00000105309.1 ENSMUSG00000105309 ENSMUST00000200382 Gm21461 unprocessed_pseudogene Interval_57973 chr15 25805130 25806314 + 0 NA intron (ENSMUSG00000022272.17, intron 36 of 40) protein_coding-intron (ENSMUSG00000022272.17, intron 16 of 20) 34889 ENSMUSG00000115593.1 ENSMUSG00000115593 ENSMUST00000228649 Gm4824 processed_pseudogene Interval_95907 chr2 118256384 118257324 + 0 NA exon (ENSMUSG00000027344.14, exon 1 of 6) protein_coding-exon (ENSMUSG00000027344.14, exon 1 of 6) 102 ENSMUSG00000027344.14 ENSMUSG00000027344 ENSMUST00000028820 Fsip1 protein_coding Interval_159194 chr8 91549902 91550142 + 0 NA intron (ENSMUSG00000055932.15, intron 5 of 5) protein_coding-intron (ENSMUSG00000055932.15, intron 8 of 8) -17298 ENSMUSG00000109709.1 ENSMUSG00000109709 ENSMUST00000211177 Gm45290 TEC Interval_39375 chr12 86973119 86975115 + 0 NA Intergenic Intergenic 9718 ENSMUSG00000048483.6 ENSMUSG00000048483 ENSMUST00000095521 Zdhhc22 protein_coding Interval_148030 chr7 78566545 78566819 + 0 NA intron (ENSMUSG00000108390.1, intron 1 of 1) protein_coding-intron (ENSMUSG00000059146.12, intron 1 of 16) 8550 ENSMUSG00000108390.1 ENSMUSG00000108390 ENSMUST00000206774 Gm39038 sense_intronic Interval_86728 chr19 43440136 43441830 + 0 NA promoter-TSS (ENSMUSG00000114742.1) antisense-promoter-TSS (ENSMUSG00000114742.1) -523 ENSMUSG00000114742.1 ENSMUSG00000114742 ENSMUST00000225283 Gm47936 antisense Interval_41095 chr12 111137149 111137675 + 0 NA Intergenic Intergenic 46212 ENSMUSG00000113200.1 ENSMUSG00000113200 ENSMUST00000221105 Gm48632 TEC Interval_81373 chr18 59703427 59703728 + 0 NA Intergenic Intergenic 34780 ENSMUSG00000089285.1 ENSMUSG00000089285 ENSMUST00000158660 Gm26028 misc_RNA Interval_142399 chr6 141513040 141513472 + 0 NA Intergenic Intergenic -11143 ENSMUSG00000030235.17 ENSMUSG00000030235 ENSMUST00000203755 Slco1c1 protein_coding Interval_46623 chr13 67690389 67691300 + 0 NA Intergenic Intergenic -7349 ENSMUSG00000048280.18 ENSMUSG00000048280 ENSMUST00000223721 Zfp738 protein_coding Interval_139290 chr6 97956370 97957210 + 0 NA intron (ENSMUSG00000035158.15, intron 2 of 9) protein_coding-intron (ENSMUSG00000035158.15, intron 2 of 9) -35131 ENSMUSG00000035158.15 ENSMUSG00000035158 ENSMUST00000203938 Mitf protein_coding Interval_3416 chr1 58150205 58150692 + 0 NA intron (ENSMUSG00000064294.12, intron 13 of 34) protein_coding-intron (ENSMUSG00000064294.12, intron 13 of 34) 4640 ENSMUSG00000089275.1 ENSMUSG00000089275 ENSMUST00000158650 Gm24548 snoRNA Interval_47981 chr13 94843048 94843757 + 0 NA TTS (ENSMUSG00000042043.6) protein_coding-TTS (ENSMUSG00000042043.6) 25668 ENSMUSG00000042043.6 ENSMUSG00000042043 ENSMUST00000220561 Tbca protein_coding Interval_167587 chr9 70807620 70807915 + 0 NA intron (ENSMUSG00000032207.10, intron 6 of 8) protein_coding-intron (ENSMUSG00000032207.10, intron 6 of 8) -8130 ENSMUSG00000087744.1 ENSMUSG00000087744 ENSMUST00000157119 Gm25149 miRNA Interval_108008 chr3 119716327 119716518 + 0 NA Intergenic Intergenic 6906 ENSMUSG00000106037.1 ENSMUSG00000106037 ENSMUST00000196114 Gm4332 processed_pseudogene Interval_18752 chr10 90016556 90017340 + 0 NA intron (ENSMUSG00000058589.14, intron 1 of 1) protein_coding-intron (ENSMUSG00000058589.14, intron 1 of 17) 117869 ENSMUSG00000112140.1 ENSMUSG00000112140 ENSMUST00000217774 Gm5780 processed_pseudogene Interval_66478 chr16 34112292 34112962 + 0 NA intron (ENSMUSG00000061751.16, intron 33 of 48) protein_coding-intron (ENSMUSG00000061751.16, intron 34 of 59) -16599 ENSMUSG00000061751.16 ENSMUSG00000061751 ENSMUST00000132569 Kalrn protein_coding Interval_129602 chr5 121249224 121249430 + 0 NA intron (ENSMUSG00000042744.16, intron 1 of 75) protein_coding-intron (ENSMUSG00000042744.16, intron 1 of 75) -36903 ENSMUSG00000042744.16 ENSMUSG00000042744 ENSMUST00000130655 Hectd4 protein_coding Interval_101343 chr2 180603878 180605608 + 0 NA intron (ENSMUSG00000027570.15, intron 9 of 10) protein_coding-intron (ENSMUSG00000027570.15, intron 10 of 31) -9370 ENSMUSG00000027570.15 ENSMUSG00000027570 ENSMUST00000165224 Col9a3 protein_coding Interval_3092 chr1 53190039 53190339 + 0 NA intron (ENSMUSG00000026098.13, intron 12 of 12) protein_coding-intron (ENSMUSG00000026098.13, intron 12 of 12) -2581 ENSMUSG00000060715.9 ENSMUSG00000060715 ENSMUST00000190748 1700019A02Rik protein_coding Interval_149954 chr7 103618082 103618566 + 0 NA Intergenic Intergenic -5790 ENSMUSG00000045132.3 ENSMUSG00000045132 ENSMUST00000052152 Olfr620 protein_coding Interval_118466 chr4 131843027 131843878 + 0 NA promoter-TSS (ENSMUSG00000028910.12) protein_coding-promoter-TSS (ENSMUSG00000028910.12) -14285 ENSMUSG00000028910.12 ENSMUSG00000028910 ENSMUST00000128607 Mecr protein_coding Interval_147072 chr7 60733472 60733852 + 0 NA Intergenic Intergenic 20351 ENSMUSG00000109222.1 ENSMUSG00000109222 ENSMUST00000207136 Gm10297 processed_pseudogene Interval_11550 chr1 182643125 182643599 + 0 NA Intergenic Intergenic -36577 ENSMUSG00000104376.1 ENSMUSG00000104376 ENSMUST00000192593 Gm37516 TEC Interval_147845 chr7 74130707 74131114 + 0 NA Intergenic Intergenic -87172 ENSMUSG00000108725.1 ENSMUSG00000108725 ENSMUST00000205302 Gm45004 lincRNA Interval_69420 chr16 93137289 93137836 + 0 NA Intergenic Intergenic 64807 ENSMUSG00000098983.1 ENSMUSG00000098983 ENSMUST00000184529 Gm28003 miRNA Interval_157144 chr8 66329780 66329982 + 0 NA intron (ENSMUSG00000036469.16, intron 2 of 5) protein_coding-intron (ENSMUSG00000036469.16, intron 2 of 5) 57654 ENSMUSG00000086156.1 ENSMUSG00000086156 ENSMUST00000132019 Gm15354 antisense Interval_160472 chr8 109792890 109793365 + 0 NA intron (ENSMUSG00000031731.16, intron 1 of 2) protein_coding-intron (ENSMUSG00000031731.16, intron 1 of 22) -46168 ENSMUSG00000077549.1 ENSMUSG00000077549 ENSMUST00000104361 Snord71 snoRNA Interval_157013 chr8 64444648 64446003 + 0 NA Intergenic Intergenic -28225 ENSMUSG00000109579.1 ENSMUSG00000109579 ENSMUST00000211285 Gm35521 lincRNA Interval_98001 chr2 146546287 146546675 + 0 NA TTS (ENSMUSG00000085796.1) lincRNA-TTS (ENSMUSG00000085796.1) 3550 ENSMUSG00000085796.1 ENSMUSG00000085796 ENSMUST00000147212 4933406D12Rik lincRNA Interval_34435 chr12 4143163 4143947 + 0 NA intron (ENSMUSG00000020654.15, intron 2 of 20) protein_coding-intron (ENSMUSG00000020654.15, intron 1 of 20) 10452 ENSMUSG00000020654.15 ENSMUSG00000020654 ENSMUST00000127110 Adcy3 protein_coding Interval_276 KZ289068.1 483463 483712 + 0 NA NA NA NA NA Interval_25957 chr11 53129560 53129971 + 0 NA intron (ENSMUSG00000036264.9, intron 6 of 15) protein_coding-intron (ENSMUSG00000036264.9, intron 6 of 15) -9709 ENSMUSG00000087668.1 ENSMUSG00000087668 ENSMUST00000137096 Gm11186 antisense Interval_107134 chr3 103790089 103792301 + 0 NA promoter-TSS (ENSMUSG00000008730.17) protein_coding-promoter-TSS (ENSMUSG00000008730.17) -8216 ENSMUSG00000104874.1 ENSMUSG00000104874 ENSMUST00000196896 Gm43387 sense_intronic Interval_173825 chrX 105612061 105613112 + 0 NA Intergenic Intergenic -44448 ENSMUSG00000081976.1 ENSMUSG00000081976 ENSMUST00000117698 Gm14823 processed_pseudogene Interval_24822 chr11 39767226 39767733 + 0 NA Intergenic Intergenic -39767 ENSMUSG00000083806.1 ENSMUSG00000083806 ENSMUST00000117479 Gm12131 processed_pseudogene Interval_19026 chr10 93882855 93883189 + 0 NA intron (ENSMUSG00000036112.15, intron 2 of 5) protein_coding-intron (ENSMUSG00000036112.15, intron 2 of 10) 4464 ENSMUSG00000036112.15 ENSMUSG00000036112 ENSMUST00000181434 Metap2 protein_coding Interval_64393 chr16 11072398 11072653 + 0 NA exon (ENSMUSG00000037972.7, exon 2 of 2) protein_coding-exon (ENSMUSG00000037972.7, exon 2 of 2) -6403 ENSMUSG00000022500.15 ENSMUSG00000022500 ENSMUST00000230709 Litaf protein_coding Interval_103965 chr3 55593003 55594077 + 0 NA Intergenic Intergenic -10810 ENSMUSG00000106334.1 ENSMUSG00000106334 ENSMUST00000198856 Gm43549 lincRNA Interval_49580 chr13 113176914 113177826 + 0 NA intron (ENSMUSG00000042385.14, intron 3 of 5) protein_coding-intron (ENSMUSG00000042385.14, intron 2 of 4) 3551 ENSMUSG00000042385.14 ENSMUSG00000042385 ENSMUST00000140324 Gzmk protein_coding Interval_7972 chr1 134955292 134956232 + 0 NA promoter-TSS (ENSMUSG00000073557.12) protein_coding-promoter-TSS (ENSMUSG00000073557.12) -6856 ENSMUSG00000026429.9 ENSMUSG00000026429 ENSMUST00000139617 Ube2t protein_coding Interval_139963 chr6 113089217 113089674 + 0 NA intron (ENSMUSG00000034269.12, intron 1 of 2) protein_coding-intron (ENSMUSG00000034269.12, intron 1 of 21) -12254 ENSMUSG00000086429.9 ENSMUSG00000086429 ENSMUST00000159544 Gt(ROSA)26Sor antisense Interval_76735 chr17 83744089 83744320 + 0 NA intron (ENSMUSG00000055817.18, intron 2 of 2) protein_coding-intron (ENSMUSG00000055817.18, intron 4 of 16) 15040 ENSMUSG00000055817.18 ENSMUSG00000055817 ENSMUST00000175920 Mta3 protein_coding Interval_4662 chr1 75802234 75802745 + 0 NA Intergenic Intergenic 166099 ENSMUSG00000082012.1 ENSMUSG00000082012 ENSMUST00000121823 Gm5257 processed_pseudogene Interval_41327 chr12 112863328 112863888 + 0 NA intron (ENSMUSG00000021298.8, intron 2 of 3) protein_coding-intron (ENSMUSG00000021298.8, intron 2 of 3) 4620 ENSMUSG00000021298.8 ENSMUSG00000021298 ENSMUST00000222776 Gpr132 protein_coding Interval_147467 chr7 67528759 67529426 + 0 NA TTS (ENSMUSG00000030556.13) protein_coding-TTS (ENSMUSG00000030556.13) 41611 ENSMUSG00000087926.1 ENSMUSG00000087926 ENSMUST00000157301 Gm23233 snoRNA Interval_4130 chr1 69852109 69852426 + 0 NA intron (ENSMUSG00000053153.14, intron 3 of 12) protein_coding-intron (ENSMUSG00000053153.14, intron 3 of 16) 69480 ENSMUSG00000089345.1 ENSMUSG00000089345 ENSMUST00000158720 Gm22665 misc_RNA Interval_145620 chr7 36151837 36152098 + 0 NA Intergenic Intergenic 33693 ENSMUSG00000066543.8 ENSMUSG00000066543 ENSMUST00000119541 Rpl17-ps9 processed_pseudogene Interval_157675 chr8 72239317 72240747 + 0 NA promoter-TSS (ENSMUSG00000003033.15) protein_coding-promoter-TSS (ENSMUSG00000003033.15) -64 ENSMUSG00000003033.15 ENSMUSG00000003033 ENSMUST00000151546 Ap1m1 protein_coding Interval_89950 chr2 26663109 26664172 + 0 NA Intergenic Intergenic 7642 ENSMUSG00000026919.1 ENSMUSG00000026919 ENSMUST00000028283 Lcn4 protein_coding Interval_122956 chr5 27818865 27820078 + 0 NA Intergenic Intergenic -1499 ENSMUSG00000105375.1 ENSMUSG00000105375 ENSMUST00000196610 Gm20239 processed_pseudogene Interval_93881 chr2 77912523 77912821 + 0 NA intron (ENSMUSG00000027014.14, intron 13 of 19) protein_coding-intron (ENSMUSG00000027014.14, intron 14 of 20) 24055 ENSMUSG00000027014.14 ENSMUSG00000027014 ENSMUST00000156863 Cwc22 protein_coding Interval_129286 chr5 118687001 118687833 + 0 NA promoter-TSS (ENSMUSG00000107115.1) TEC-promoter-TSS (ENSMUSG00000107115.1) -201 ENSMUSG00000107115.1 ENSMUSG00000107115 ENSMUST00000201451 Gm43052 TEC Interval_20252 chr10 116444229 116445347 + 0 NA intron (ENSMUSG00000054934.10, intron 1 of 1) protein_coding-intron (ENSMUSG00000054934.10, intron 2 of 2) 26736 ENSMUSG00000020164.7 ENSMUSG00000020164 ENSMUST00000134586 Kcnmb4os1 antisense Interval_153326 chr7 143628713 143629159 + 0 NA promoter-TSS (ENSMUSG00000045362.8) protein_coding-promoter-TSS (ENSMUSG00000045362.8) -214 ENSMUSG00000045362.8 ENSMUSG00000045362 ENSMUST00000055723 Tnfrsf26 protein_coding Interval_166609 chr9 61299756 61300954 + 0 NA Intergenic Intergenic -6546 ENSMUSG00000111658.1 ENSMUSG00000111658 ENSMUST00000213377 B930092H01Rik lincRNA Interval_68285 chr16 72475008 72475877 + 0 NA intron (ENSMUSG00000022883.11, intron 1 of 1) protein_coding-intron (ENSMUSG00000022883.11, intron 1 of 1) -103001 ENSMUSG00000116910.1 ENSMUSG00000116910 ENSMUST00000232381 Gm49670 processed_pseudogene Interval_25184 chr11 44892879 44893557 + 0 NA intron (ENSMUSG00000057098.14, intron 8 of 15) protein_coding-intron (ENSMUSG00000057098.14, intron 8 of 15) 223710 ENSMUSG00000084773.1 ENSMUSG00000084773 ENSMUST00000143869 Gm12159 lincRNA Interval_17177 chr10 74120956 74121207 + 0 NA intron (ENSMUSG00000052613.16, intron 2 of 34) protein_coding-intron (ENSMUSG00000052613.16, intron 3 of 30) 174025 ENSMUSG00000052613.16 ENSMUSG00000052613 ENSMUST00000192370 Pcdh15 protein_coding Interval_105770 chr3 89245654 89246876 + 0 NA promoter-TSS (ENSMUSG00000042766.17) protein_coding-promoter-TSS (ENSMUSG00000042766.17) -169 ENSMUSG00000042747.12 ENSMUSG00000042747 ENSMUST00000132818 Krtcap2 protein_coding Interval_169582 chr9 99254083 99254319 + 0 NA intron (ENSMUSG00000056267.14, intron 2 of 15) protein_coding-intron (ENSMUSG00000056267.14, intron 2 of 17) 6006 ENSMUSG00000111651.1 ENSMUSG00000111651 ENSMUST00000214024 Gm47199 processed_pseudogene Interval_121437 chr4 155790688 155793535 + 0 NA exon (ENSMUSG00000078487.8, exon 2 of 3) protein_coding-exon (ENSMUSG00000078487.8, exon 2 of 3) 1672 ENSMUSG00000078487.8 ENSMUSG00000078487 ENSMUST00000105593 Ankrd65 protein_coding Interval_10001 chr1 164837720 164837913 + 0 NA intron (ENSMUSG00000103659.1, intron 2 of 2) antisense-intron (ENSMUSG00000103659.1, intron 2 of 2) -22517 ENSMUSG00000103659.1 ENSMUSG00000103659 ENSMUST00000193955 Gm32569 antisense Interval_2427 chr1 39243947 39245602 + 0 NA intron (ENSMUSG00000026077.15, intron 1 of 20) protein_coding-intron (ENSMUSG00000026077.15, intron 1 of 20) 31791 ENSMUSG00000092553.1 ENSMUSG00000092553 ENSMUST00000174365 Gm20428 processed_pseudogene Interval_75059 chr17 62691501 62692741 + 0 NA intron (ENSMUSG00000048915.12, intron 1 of 3) protein_coding-intron (ENSMUSG00000048915.12, intron 1 of 4) 189023 ENSMUSG00000048915.12 ENSMUSG00000048915 ENSMUST00000078839 Efna5 protein_coding Interval_167190 chr9 66059612 66060615 + 0 NA promoter-TSS (ENSMUSG00000032383.7) protein_coding-promoter-TSS (ENSMUSG00000032383.7) -109 ENSMUSG00000032383.7 ENSMUSG00000032383 ENSMUST00000034947 Ppib protein_coding Interval_152149 chr7 130178841 130179460 + 0 NA intron (ENSMUSG00000030849.18, intron 11 of 16) protein_coding-intron (ENSMUSG00000030849.18, intron 9 of 14) 87105 ENSMUSG00000030849.18 ENSMUSG00000030849 ENSMUST00000208844 Fgfr2 protein_coding Interval_155280 chr8 30621360 30621867 + 0 NA Intergenic Intergenic 53220 ENSMUSG00000097044.1 ENSMUSG00000097044 ENSMUST00000180571 4933433F19Rik lincRNA Interval_144014 chr7 18970442 18971374 + 0 NA Intergenic Intergenic -16492 ENSMUSG00000051965.8 ENSMUSG00000051965 ENSMUST00000063563 Nanos2 protein_coding Interval_42655 chr13 17738861 17739659 + 0 NA exon (ENSMUSG00000041297.8, exon 1 of 6) protein_coding-exon (ENSMUSG00000041297.8, exon 1 of 6) -2206 ENSMUSG00000113432.1 ENSMUSG00000113432 ENSMUST00000220908 8430406P12Rik TEC Interval_72268 chr17 28890814 28891009 + 0 NA TTS (ENSMUSG00000043286.12) protein_coding-TTS (ENSMUSG00000043286.12) -14354 ENSMUSG00000085333.1 ENSMUSG00000085333 ENSMUST00000125317 1700030A11Rik antisense Interval_174454 chrX 152679108 152680057 + 0 NA intron (ENSMUSG00000045180.13, intron 2 of 9) protein_coding-intron (ENSMUSG00000045180.13, intron 2 of 9) -6342 ENSMUSG00000045180.13 ENSMUSG00000045180 ENSMUST00000141677 Shroom2 protein_coding Interval_49532 chr13 112770132 112771532 + 0 NA Intergenic Intergenic 5984 ENSMUSG00000114286.1 ENSMUSG00000114286 ENSMUST00000225832 Gm47850 lincRNA Interval_167690 chr9 72004200 72004401 + 0 NA promoter-TSS (ENSMUSG00000104078.1) TEC-promoter-TSS (ENSMUSG00000104078.1) -497 ENSMUSG00000104078.1 ENSMUSG00000104078 ENSMUST00000192895 Gm37023 TEC Interval_73391 chr17 36942443 36943576 + 0 NA promoter-TSS (ENSMUSG00000036492.12) protein_coding-promoter-TSS (ENSMUSG00000036492.12) -2069 ENSMUSG00000036492.12 ENSMUSG00000036492 ENSMUST00000174669 Rnf39 protein_coding Interval_110285 chr3 155851384 155851578 + 0 NA Intergenic Intergenic -51867 ENSMUSG00000102443.1 ENSMUSG00000102443 ENSMUST00000195740 Gm37102 processed_pseudogene Interval_164727 chr9 40826766 40827306 + 0 NA Intergenic Intergenic 6067 ENSMUSG00000110982.1 ENSMUSG00000110982 ENSMUST00000215895 Gm48565 TEC Interval_76762 chr17 83880257 83881638 + 0 NA Intergenic Intergenic -26529 ENSMUSG00000097254.2 ENSMUSG00000097254 ENSMUST00000234697 C430042M11Rik lincRNA Interval_157255 chr8 68560691 68561392 + 0 NA intron (ENSMUSG00000036356.15, intron 3 of 3) protein_coding-intron (ENSMUSG00000036356.15, intron 2 of 9) -31154 ENSMUSG00000036356.15 ENSMUSG00000036356 ENSMUST00000139141 Csgalnact1 protein_coding Interval_114830 chr4 86024347 86025400 + 0 NA intron (ENSMUSG00000066113.16, intron 2 of 3) protein_coding-intron (ENSMUSG00000066113.16, intron 2 of 3) 18621 ENSMUSG00000064687.1 ENSMUSG00000064687 ENSMUST00000082753 Gm25811 snRNA Interval_131928 chr5 140847108 140847779 + 0 NA Intergenic Intergenic -17286 ENSMUSG00000000149.10 ENSMUSG00000000149 ENSMUST00000198447 Gna12 protein_coding Interval_70085 chr17 5204507 5204751 + 0 NA intron (ENSMUSG00000069729.14, intron 4 of 19) protein_coding-intron (ENSMUSG00000069729.14, intron 4 of 18) -92519 ENSMUSG00000081783.2 ENSMUSG00000081783 ENSMUST00000122283 Gm15599 processed_pseudogene Interval_41650 chr12 117382700 117385541 + 0 NA Intergenic Intergenic -47108 ENSMUSG00000101930.1 ENSMUSG00000101930 ENSMUST00000186454 Gm5441 antisense Interval_48074 chr13 95805630 95806180 + 0 NA intron (ENSMUSG00000021676.10, intron 2 of 6) protein_coding-intron (ENSMUSG00000021676.10, intron 2 of 35) 69322 ENSMUSG00000118436.1 ENSMUSG00000118436 ENSMUST00000238548 Gm32880 antisense Interval_9416 chr1 156937528 156937793 + 0 NA intron (ENSMUSG00000026594.14, intron 1 of 19) protein_coding-intron (ENSMUSG00000026594.14, intron 1 of 18) 1939 ENSMUSG00000026594.14 ENSMUSG00000026594 ENSMUST00000189648 Ralgps2 protein_coding Interval_43625 chr13 34192770 34193394 + 0 NA intron (ENSMUSG00000038267.15, intron 8 of 9) protein_coding-intron (ENSMUSG00000038267.15, intron 9 of 10) 30118 ENSMUSG00000071451.10 ENSMUSG00000071451 ENSMUST00000147632 Psmg4 protein_coding Interval_167132 chr9 65566930 65567135 + 0 NA intron (ENSMUSG00000050721.9, intron 3 of 6) protein_coding-intron (ENSMUSG00000050721.9, intron 2 of 5) 12002 ENSMUSG00000050721.9 ENSMUSG00000050721 ENSMUST00000213652 Plekho2 protein_coding Interval_27727 chr11 69698783 69699187 + 0 NA Intergenic Intergenic -2887 ENSMUSG00000018752.19 ENSMUSG00000018752 ENSMUST00000108649 Tnfsfm13 protein_coding Interval_84194 chr19 8682860 8683327 + 0 NA promoter-TSS (ENSMUSG00000087830.1) misc_RNA-promoter-TSS (ENSMUSG00000087830.1) -930 ENSMUSG00000087830.1 ENSMUSG00000087830 ENSMUST00000157205 Gm22820 misc_RNA Interval_142511 chr6 142986050 142986979 + 0 NA Intergenic Intergenic -3096 ENSMUSG00000107839.1 ENSMUSG00000107839 ENSMUST00000203259 4930434O05Rik lincRNA Interval_3680 chr1 60762735 60763018 + 0 NA intron (ENSMUSG00000026012.2, intron 1 of 1) protein_coding-intron (ENSMUSG00000026012.2, intron 1 of 3) -15967 ENSMUSG00000085965.1 ENSMUSG00000085965 ENSMUST00000130082 2310016D23Rik lincRNA Interval_74630 chr17 53982483 53982766 + 0 NA intron (ENSMUSG00000023943.7, intron 1 of 7) protein_coding-intron (ENSMUSG00000023943.7, intron 1 of 7) 8050 ENSMUSG00000023943.7 ENSMUSG00000023943 ENSMUST00000024738 Sult1c1 protein_coding Interval_86109 chr19 36796629 36797271 + 0 NA Intergenic Intergenic -21698 ENSMUSG00000117938.1 ENSMUSG00000117938 ENSMUST00000236351 Gm50112 processed_pseudogene Interval_12153 chr1 190172889 190173177 + 0 NA intron (ENSMUSG00000079045.3, intron 1 of 1) antisense-intron (ENSMUSG00000079045.3, intron 1 of 1) -2353 ENSMUSG00000010175.13 ENSMUSG00000010175 ENSMUST00000177288 Prox1 protein_coding Interval_14148 chr10 28108466 28108639 + 0 NA intron (ENSMUSG00000019889.10, intron 1 of 2) protein_coding-intron (ENSMUSG00000019889.10, intron 1 of 31) -42362 ENSMUSG00000112432.1 ENSMUSG00000112432 ENSMUST00000218855 Gm18507 processed_pseudogene Interval_160905 chr8 114850285 114851193 + 0 NA intron (ENSMUSG00000004637.15, intron 8 of 8) protein_coding-intron (ENSMUSG00000004637.15, intron 8 of 8) 138572 ENSMUSG00000004637.15 ENSMUSG00000004637 ENSMUST00000162052 Wwox protein_coding Interval_110315 chr3 156689638 156690468 + 0 NA intron (ENSMUSG00000040037.13, intron 1 of 6) protein_coding-intron (ENSMUSG00000040037.13, intron 1 of 6) -13847 ENSMUSG00000106047.1 ENSMUSG00000106047 ENSMUST00000196086 Gm42942 TEC Interval_57623 chr15 12895120 12896041 + 0 NA intron (ENSMUSG00000022191.16, intron 22 of 34) protein_coding-intron (ENSMUSG00000022191.16, intron 22 of 34) 53484 ENSMUSG00000104911.1 ENSMUSG00000104911 ENSMUST00000198820 Gm47288 miRNA Interval_48773 chr13 103069608 103069848 + 0 NA TTS (ENSMUSG00000034751.17) protein_coding-TTS (ENSMUSG00000034751.17) 27117 ENSMUSG00000034751.17 ENSMUSG00000034751 ENSMUST00000187024 Mast4 protein_coding Interval_38255 chr12 76676396 76676662 + 0 NA intron (ENSMUSG00000021061.15, intron 1 of 31) protein_coding-intron (ENSMUSG00000021061.15, intron 1 of 35) -15451 ENSMUSG00000088356.1 ENSMUSG00000088356 ENSMUST00000157731 Gm24010 misc_RNA Interval_19325 chr10 96721149 96722931 + 0 NA Intergenic Intergenic 10233 ENSMUSG00000112362.1 ENSMUSG00000112362 ENSMUST00000219424 Gm48507 processed_pseudogene Interval_95361 chr2 106937872 106938223 + 0 NA Intergenic Intergenic -10878 ENSMUSG00000084164.1 ENSMUSG00000084164 ENSMUST00000120168 Gm13902 processed_pseudogene Interval_70576 chr17 12103496 12104498 + 0 NA Intergenic Intergenic -15332 ENSMUSG00000023827.8 ENSMUSG00000023827 ENSMUST00000167905 Agpat4 protein_coding Interval_37564 chr12 69899825 69900117 + 0 NA intron (ENSMUSG00000021066.9, intron 1 of 13) protein_coding-intron (ENSMUSG00000021066.9, intron 1 of 14) -6868 ENSMUSG00000034761.15 ENSMUSG00000034761 ENSMUST00000147451 Map4k5 protein_coding Interval_63235 chr15 99863089 99863319 + 0 NA intron (ENSMUSG00000023022.14, intron 1 of 1) protein_coding-intron (ENSMUSG00000023022.14, intron 1 of 10) 11467 ENSMUSG00000023022.14 ENSMUSG00000023022 ENSMUST00000171450 Lima1 protein_coding Interval_116747 chr4 117062576 117063510 + 0 NA intron (ENSMUSG00000028683.14, intron 6 of 11) protein_coding-intron (ENSMUSG00000028683.14, intron 5 of 9) -4420 ENSMUSG00000028683.14 ENSMUSG00000028683 ENSMUST00000129587 Eif2b3 protein_coding Interval_57002 chr15 3963032 3963372 + 0 NA Intergenic Intergenic 9658 ENSMUSG00000022184.8 ENSMUSG00000022184 ENSMUST00000148169 Fbxo4 protein_coding Interval_1399 chr1 21344438 21345401 + 0 NA Intergenic Intergenic -4722 ENSMUSG00000067750.3 ENSMUSG00000067750 ENSMUST00000088407 Khdc1a protein_coding Interval_16019 chr10 60154561 60154762 + 0 NA Intergenic Intergenic 27885 ENSMUSG00000105468.1 ENSMUSG00000105468 ENSMUST00000198998 Mir6906 miRNA Interval_4802 chr1 79126022 79126729 + 0 NA intron (ENSMUSG00000099706.1, intron 2 of 3) lincRNA-intron (ENSMUSG00000099706.1, intron 2 of 3) 98136 ENSMUSG00000099706.1 ENSMUSG00000099706 ENSMUST00000189296 Gm29536 lincRNA Interval_17873 chr10 80526071 80527234 + 0 NA intron (ENSMUSG00000003341.9, intron 19 of 26) protein_coding-intron (ENSMUSG00000003341.9, intron 19 of 27) 12472 ENSMUSG00000003341.9 ENSMUSG00000003341 ENSMUST00000219648 Atp8b3 protein_coding Interval_119564 chr4 138394798 138397019 + 0 NA exon (ENSMUSG00000078235.3, exon 1 of 1) protein_coding-exon (ENSMUSG00000078235.3, exon 1 of 1) 620 ENSMUSG00000078235.3 ENSMUSG00000078235 ENSMUST00000105032 Fam43b protein_coding Interval_86252 chr19 38096073 38097925 + 0 NA promoter-TSS (ENSMUSG00000054200.7) protein_coding-promoter-TSS (ENSMUSG00000054200.7) -72 ENSMUSG00000054200.7 ENSMUSG00000054200 ENSMUST00000067098 Ffar4 protein_coding Interval_103236 chr3 37291900 37292156 + 0 NA Intergenic Intergenic 20418 ENSMUSG00000045031.18 ENSMUSG00000045031 ENSMUST00000125252 Cetn4 protein_coding Interval_123475 chr5 32759832 32761055 + 0 NA intron (ENSMUSG00000093574.1, intron 7 of 11) protein_coding-intron (ENSMUSG00000023452.19, intron 3 of 7) -19589 ENSMUSG00000023452.19 ENSMUSG00000023452 ENSMUST00000145759 Pisd protein_coding Interval_158702 chr8 85421434 85423050 + 0 NA intron (ENSMUSG00000036934.9, intron 1 of 2) protein_coding-intron (ENSMUSG00000036934.9, intron 2 of 3) -7727 ENSMUSG00000109790.1 ENSMUSG00000109790 ENSMUST00000211717 Gm45594 processed_pseudogene Interval_57556 chr15 12320918 12322398 + 0 NA promoter-TSS (ENSMUSG00000022200.8) protein_coding-promoter-TSS (ENSMUSG00000022200.8) 23 ENSMUSG00000022200.8 ENSMUSG00000022200 ENSMUST00000228671 Golph3 protein_coding Interval_129544 chr5 120819114 120819397 + 0 NA intron (ENSMUSG00000029605.16, intron 3 of 5) polymorphic_pseudogene-intron (ENSMUSG00000029605.16, intron 6 of 8) 6617 ENSMUSG00000029605.16 ENSMUSG00000029605 ENSMUST00000183291 Oas1b polymorphic_pseudogene Interval_98624 chr2 153621301 153623273 + 0 NA intron (ENSMUSG00000056941.17, intron 5 of 6) protein_coding-intron (ENSMUSG00000056941.17, intron 5 of 8) 10444 ENSMUSG00000056941.17 ENSMUSG00000056941 ENSMUST00000109782 Commd7 protein_coding Interval_25402 chr11 47501137 47501651 + 0 NA intron (ENSMUSG00000020354.15, intron 2 of 2) protein_coding-intron (ENSMUSG00000020354.15, intron 1 of 6) -40038 ENSMUSG00000082792.1 ENSMUSG00000082792 ENSMUST00000121420 Gm12176 processed_pseudogene Interval_58869 chr15 39422579 39423669 + 0 NA intron (ENSMUSG00000037386.16, intron 1 of 2) protein_coding-intron (ENSMUSG00000037386.16, intron 3 of 26) -14114 ENSMUSG00000037386.16 ENSMUSG00000037386 ENSMUST00000226410 Rims2 protein_coding Interval_117761 chr4 126077215 126078022 + 0 NA intron (ENSMUSG00000042616.8, intron 5 of 10) protein_coding-intron (ENSMUSG00000042616.8, intron 4 of 9) -5310 ENSMUSG00000042616.8 ENSMUSG00000042616 ENSMUST00000129968 Oscp1 protein_coding Interval_52168 chr14 37820123 37820401 + 0 NA Intergenic Intergenic 92436 ENSMUSG00000114227.1 ENSMUSG00000114227 ENSMUST00000223652 Gm5204 processed_pseudogene Interval_106520 chr3 96868831 96869041 + 0 NA exon (ENSMUSG00000028096.13, exon 14 of 14) protein_coding-exon (ENSMUSG00000028096.13, exon 14 of 14) 29611 ENSMUSG00000028096.13 ENSMUSG00000028096 ENSMUST00000154750 Gpr89 protein_coding Interval_108381 chr3 126454953 126455276 + 0 NA Intergenic Intergenic 7371 ENSMUSG00000105233.1 ENSMUSG00000105233 ENSMUST00000197129 Gm20568 processed_pseudogene Interval_2007 chr1 35858417 35859233 + 0 NA Intergenic Intergenic -21020 ENSMUSG00000102531.1 ENSMUSG00000102531 ENSMUST00000194261 1110002O04Rik lincRNA Interval_157243 chr8 68361848 68362644 + 0 NA intron (ENSMUSG00000036356.15, intron 9 of 10) protein_coding-intron (ENSMUSG00000036356.15, intron 8 of 9) -6220 ENSMUSG00000085197.7 ENSMUSG00000085197 ENSMUST00000139265 1700125H03Rik antisense Interval_104045 chr3 57663871 57665004 + 0 NA TTS (ENSMUSG00000074591.8) protein_coding-TTS (ENSMUSG00000074591.8) -8858 ENSMUSG00000105389.1 ENSMUSG00000105389 ENSMUST00000198619 BB187690 TEC Interval_53972 chr14 63958050 63958285 + 0 NA Intergenic Intergenic 14494 ENSMUSG00000063060.6 ENSMUSG00000063060 ENSMUST00000079652 Sox7 protein_coding Interval_59956 chr15 62214231 62214689 + 0 NA intron (ENSMUSG00000097039.8, intron 1 of 3) lincRNA-intron (ENSMUSG00000097039.8, intron 5 of 8) 4872 ENSMUSG00000101167.1 ENSMUSG00000101167 ENSMUST00000151919 Macroh2a3 processed_pseudogene Interval_52502 chr14 47110994 47111974 + 0 NA intron (ENSMUSG00000072589.4, intron 2 of 2) antisense-intron (ENSMUSG00000072589.4, intron 3 of 3) 4587 ENSMUSG00000072589.4 ENSMUSG00000072589 ENSMUST00000228010 Gm10371 antisense Interval_2281 chr1 37646535 37646812 + 0 NA intron (ENSMUSG00000026090.16, intron 1 of 9) protein_coding-intron (ENSMUSG00000026090.16, intron 2 of 3) -14049 ENSMUSG00000104365.1 ENSMUSG00000104365 ENSMUST00000192005 4930470B04Rik TEC Interval_25465 chr11 48774645 48777933 + 0 NA Intergenic Intergenic -22575 ENSMUSG00000082454.3 ENSMUSG00000082454 ENSMUST00000120566 Gm12183 processed_pseudogene Interval_23720 chr11 25313408 25314076 + 0 NA intron (ENSMUSG00000086439.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000086439.1, intron 1 of 2) 12479 ENSMUSG00000086439.1 ENSMUSG00000086439 ENSMUST00000145127 Gm12069 lincRNA Interval_24842 chr11 40216542 40216770 + 0 NA intron (ENSMUSG00000085301.1, intron 5 of 7) lincRNA-intron (ENSMUSG00000085301.1, intron 5 of 7) 206698 ENSMUSG00000082295.1 ENSMUSG00000082295 ENSMUST00000121775 Gm12133 processed_pseudogene Interval_104460 chr3 65966410 65967171 + 0 NA Intergenic Intergenic 2361 ENSMUSG00000102914.1 ENSMUSG00000102914 ENSMUST00000192731 Gm35106 processed_pseudogene Interval_58684 chr15 37031101 37032347 + 0 NA intron (ENSMUSG00000097259.2, intron 4 of 6) antisense-intron (ENSMUSG00000097259.2, intron 4 of 6) 24141 ENSMUSG00000097259.2 ENSMUSG00000097259 ENSMUST00000227544 Gm26766 antisense Interval_13130 chr10 12052995 12053237 + 0 NA Intergenic Intergenic -21676 ENSMUSG00000112775.1 ENSMUSG00000112775 ENSMUST00000220015 Gm48722 lincRNA Interval_123509 chr5 33052776 33053518 + 0 NA Intergenic Intergenic 3162 ENSMUSG00000107046.1 ENSMUSG00000107046 ENSMUST00000201086 Gm43849 processed_pseudogene Interval_91259 chr2 36810437 36810698 + 0 NA TTS (ENSMUSG00000075384.2) protein_coding-TTS (ENSMUSG00000075384.2) -2175 ENSMUSG00000083716.4 ENSMUSG00000083716 ENSMUST00000120418 Gm13436 processed_pseudogene Interval_84972 chr19 20796140 20796786 + 0 NA intron (ENSMUSG00000024749.9, intron 3 of 6) protein_coding-intron (ENSMUSG00000024749.9, intron 17 of 20) 18204 ENSMUSG00000024749.9 ENSMUSG00000024749 ENSMUST00000235546 Tmc1 protein_coding Interval_172329 chrX 13057646 13058113 + 0 NA Intergenic Intergenic 15828 ENSMUSG00000087424.1 ENSMUSG00000087424 ENSMUST00000130099 5730405O15Rik processed_transcript Interval_85071 chr19 22138466 22139624 + 0 NA promoter-TSS (ENSMUSG00000052387.16) protein_coding-promoter-TSS (ENSMUSG00000052387.16) 96573 ENSMUSG00000088558.1 ENSMUSG00000088558 ENSMUST00000157933 Gm22506 snoRNA Interval_32833 chr11 111399544 111399847 + 0 NA Intergenic Intergenic 123595 ENSMUSG00000082272.1 ENSMUSG00000082272 ENSMUST00000121873 Gm11675 processed_pseudogene Interval_73167 chr17 35222272 35222517 + 0 NA promoter-TSS (ENSMUSG00000042419.8) protein_coding-promoter-TSS (ENSMUSG00000042419.8) -737 ENSMUSG00000042419.8 ENSMUSG00000042419 ENSMUST00000176748 Nfkbil1 protein_coding Interval_15104 chr10 42600751 42602269 + 0 NA intron (ENSMUSG00000038280.12, intron 2 of 6) protein_coding-intron (ENSMUSG00000038280.12, intron 2 of 5) -20736 ENSMUSG00000019803.11 ENSMUSG00000019803 ENSMUST00000143891 Nr2e1 protein_coding Interval_129195 chr5 118120420 118121065 + 0 NA intron (ENSMUSG00000032867.8, intron 4 of 7) protein_coding-intron (ENSMUSG00000032867.8, intron 4 of 10) 28152 ENSMUSG00000088293.1 ENSMUSG00000088293 ENSMUST00000157668 Gm26411 snRNA Interval_32486 chr11 107853006 107853712 + 0 NA Intergenic Intergenic 1614 ENSMUSG00000098991.1 ENSMUSG00000098991 ENSMUST00000184579 Gm27595 rRNA Interval_2922 chr1 50689430 50689824 + 0 NA Intergenic Intergenic -125748 ENSMUSG00000100816.1 ENSMUSG00000100816 ENSMUST00000187677 Gm28321 lincRNA Interval_46309 chr13 63668699 63670236 + 0 NA Intergenic Intergenic 7670 ENSMUSG00000113700.1 ENSMUSG00000113700 ENSMUST00000221930 Gm47387 processed_pseudogene Interval_95976 chr2 118881572 118882275 + 0 NA TTS (ENSMUSG00000027332.11) protein_coding-TTS (ENSMUSG00000027332.11) 5490 ENSMUSG00000027332.11 ENSMUSG00000027332 ENSMUST00000154104 Ivd protein_coding Interval_82317 chr18 70590860 70591092 + 0 NA intron (ENSMUSG00000024513.16, intron 1 of 5) protein_coding-intron (ENSMUSG00000024513.16, intron 2 of 6) -2279 ENSMUSG00000024513.16 ENSMUSG00000024513 ENSMUST00000128555 Mbd2 protein_coding Interval_56700 chr14 121455660 121457115 + 0 NA promoter-TSS (ENSMUSG00000115123.1) lincRNA-promoter-TSS (ENSMUSG00000115123.1) -625 ENSMUSG00000115123.1 ENSMUSG00000115123 ENSMUST00000227451 Gm33299 lincRNA Interval_18686 chr10 89326677 89327633 + 0 NA intron (ENSMUSG00000035189.17, intron 2 of 6) protein_coding-intron (ENSMUSG00000035189.17, intron 2 of 10) -69565 ENSMUSG00000035189.17 ENSMUSG00000035189 ENSMUST00000180843 Ano4 protein_coding Interval_93682 chr2 75802223 75802639 + 0 NA Intergenic Intergenic -5927 ENSMUSG00000081833.1 ENSMUSG00000081833 ENSMUST00000122366 Gm13669 processed_pseudogene Interval_156632 chr8 56056778 56057030 + 0 NA intron (ENSMUSG00000038257.10, intron 4 of 9) protein_coding-intron (ENSMUSG00000038257.10, intron 4 of 9) -39804 ENSMUSG00000109662.1 ENSMUSG00000109662 ENSMUST00000209828 Gm45366 processed_pseudogene Interval_120791 chr4 150662142 150662389 + 0 NA Intergenic Intergenic 16527 ENSMUSG00000085869.1 ENSMUSG00000085869 ENSMUST00000149065 Gm16079 lincRNA Interval_104515 chr3 67167453 67167734 + 0 NA intron (ENSMUSG00000034544.17, intron 4 of 8) protein_coding-intron (ENSMUSG00000034544.17, intron 3 of 8) 111635 ENSMUSG00000065245.1 ENSMUSG00000065245 ENSMUST00000083311 Gm22295 snRNA Interval_151999 chr7 128079860 128080988 + 0 NA intron (ENSMUSG00000030786.18, intron 7 of 28) protein_coding-intron (ENSMUSG00000030786.18, intron 7 of 29) 17681 ENSMUSG00000030786.18 ENSMUSG00000030786 ENSMUST00000156593 Itgam protein_coding Interval_145712 chr7 37606624 37607451 + 0 NA intron (ENSMUSG00000043456.17, intron 3 of 3) protein_coding-intron (ENSMUSG00000043456.17, intron 3 of 5) -38647 ENSMUSG00000043456.17 ENSMUSG00000043456 ENSMUST00000206332 Zfp536 protein_coding Interval_134671 chr6 30262208 30262645 + 0 NA intron (ENSMUSG00000039159.16, intron 1 of 4) protein_coding-intron (ENSMUSG00000039159.16, intron 1 of 4) 42102 ENSMUSG00000039159.16 ENSMUSG00000039159 ENSMUST00000148744 Ube2h protein_coding Interval_129405 chr5 119770271 119771487 + 0 NA Intergenic Intergenic 36990 ENSMUSG00000107053.1 ENSMUSG00000107053 ENSMUST00000202127 1700021F13Rik lincRNA Interval_173717 chrX 102684320 102685459 + 0 NA Intergenic Intergenic 2083 ENSMUSG00000081443.2 ENSMUSG00000081443 ENSMUST00000122154 Gm3880 protein_coding Interval_16040 chr10 60251824 60253506 + 0 NA Intergenic Intergenic -24963 ENSMUSG00000004207.14 ENSMUSG00000004207 ENSMUST00000165878 Psap protein_coding Interval_61506 chr15 82040351 82041098 + 0 NA TTS (ENSMUSG00000022471.14) protein_coding-TTS (ENSMUSG00000022471.14) 6795 ENSMUSG00000063480.8 ENSMUSG00000063480 ENSMUST00000166578 Snu13 protein_coding Interval_80810 chr18 47377838 47378056 + 0 NA Intergenic Intergenic 37414 ENSMUSG00000117515.1 ENSMUSG00000117515 ENSMUST00000234328 Gm6883 processed_pseudogene Interval_160470 chr8 109762498 109762736 + 0 NA Intergenic Intergenic -30504 ENSMUSG00000069895.4 ENSMUSG00000069895 ENSMUST00000212726 Atxn1l protein_coding Interval_721 chr1 10139631 10140130 + 0 NA intron (ENSMUSG00000067851.11, intron 2 of 2) protein_coding-intron (ENSMUSG00000067851.11, intron 37 of 37) 1821 ENSMUSG00000067851.11 ENSMUSG00000067851 ENSMUST00000186720 Arfgef1 protein_coding Interval_72657 chr17 31351531 31352376 + 0 NA Intergenic Intergenic 18336 ENSMUSG00000024036.16 ENSMUSG00000024036 ENSMUST00000235220 Slc37a1 protein_coding Interval_17086 chr10 71284284 71285580 + 0 NA intron (ENSMUSG00000019927.6, intron 1 of 3) protein_coding-intron (ENSMUSG00000019927.6, intron 1 of 6) -2797 ENSMUSG00000112813.1 ENSMUSG00000112813 ENSMUST00000218529 Gm34376 lincRNA Interval_157466 chr8 70538223 70540074 + 0 NA promoter-TSS (ENSMUSG00000070002.7) protein_coding-promoter-TSS (ENSMUSG00000070002.7) -309 ENSMUSG00000070002.7 ENSMUSG00000070002 ENSMUST00000093454 Ell protein_coding Interval_54745 chr14 74640818 74641613 + 0 NA exon (ENSMUSG00000034997.5, exon 1 of 3) protein_coding-exon (ENSMUSG00000034997.5, exon 1 of 3) 375 ENSMUSG00000034997.5 ENSMUSG00000034997 ENSMUST00000036653 Htr2a protein_coding Interval_159613 chr8 95790622 95791925 + 0 NA intron (ENSMUSG00000036550.16, intron 1 of 3) protein_coding-intron (ENSMUSG00000036550.16, intron 1 of 47) -12743 ENSMUSG00000110556.1 ENSMUSG00000110556 ENSMUST00000212863 Gm45762 TEC Interval_91432 chr2 38797163 38797515 + 0 NA intron (ENSMUSG00000063972.13, intron 2 of 5) protein_coding-intron (ENSMUSG00000063972.13, intron 3 of 10) 19603 ENSMUSG00000082508.1 ENSMUSG00000082508 ENSMUST00000122372 Rpl15-ps4 processed_pseudogene Interval_172307 chrX 12834732 12835349 + 0 NA Intergenic Intergenic 35322 ENSMUSG00000077858.1 ENSMUSG00000077858 ENSMUST00000104666 Gm25063 miRNA Interval_23707 chr11 24951132 24951812 + 0 NA Intergenic Intergenic -25422 ENSMUSG00000087145.7 ENSMUSG00000087145 ENSMUST00000126063 Gm12665 lincRNA Interval_62256 chr15 89202000 89202418 + 0 NA Intergenic Intergenic -5744 ENSMUSG00000015377.10 ENSMUSG00000015377 ENSMUST00000230823 Dennd6b protein_coding Interval_54967 chr14 76555953 76557037 + 0 NA promoter-TSS (ENSMUSG00000052584.10) protein_coding-promoter-TSS (ENSMUSG00000052584.10) 394 ENSMUSG00000052584.10 ENSMUSG00000052584 ENSMUST00000228524 Serp2 protein_coding Interval_111374 chr4 19981717 19982299 + 0 NA intron (ENSMUSG00000086332.2, intron 4 of 7) transcribed_unitary_pseudogene-intron (ENSMUSG00000086332.2, intron 3 of 4) -25930 ENSMUSG00000073988.13 ENSMUSG00000073988 ENSMUST00000098244 Ttpa protein_coding Interval_91658 chr2 45914063 45914461 + 0 NA Intergenic Intergenic 104790 ENSMUSG00000083807.1 ENSMUSG00000083807 ENSMUST00000121515 Gm13466 processed_pseudogene Interval_153824 chr8 9188585 9188860 + 0 NA Intergenic Intergenic 21205 ENSMUSG00000109064.1 ENSMUSG00000109064 ENSMUST00000208237 Gm39128 lincRNA Interval_82409 chr18 73780914 73782028 + 0 NA intron (ENSMUSG00000024556.4, intron 12 of 15) protein_coding-intron (ENSMUSG00000024556.4, intron 12 of 15) -26992 ENSMUSG00000036941.2 ENSMUSG00000036941 ENSMUST00000041138 Elac1 protein_coding Interval_63670 chr15 102692425 102694044 + 0 NA Intergenic Intergenic 16826 ENSMUSG00000023055.10 ENSMUSG00000023055 ENSMUST00000230374 Calcoco1 protein_coding Interval_74607 chr17 53678672 53679489 + 0 NA exon (ENSMUSG00000023940.14, exon 7 of 9) protein_coding-exon (ENSMUSG00000023940.14, exon 7 of 9) 10198 ENSMUSG00000023940.14 ENSMUSG00000023940 ENSMUST00000146019 Sgo1 protein_coding Interval_171906 chr9 122351205 122352357 + 0 NA promoter-TSS (ENSMUSG00000032540.16) protein_coding-promoter-TSS (ENSMUSG00000032540.16) -8 ENSMUSG00000032540.16 ENSMUSG00000032540 ENSMUST00000154161 Abhd5 protein_coding Interval_162356 chr8 127370209 127370445 + 0 NA TTS (ENSMUSG00000025812.18) protein_coding-TTS (ENSMUSG00000025812.18) -191108 ENSMUSG00000090074.1 ENSMUSG00000090074 ENSMUST00000161478 Gm6921 processed_pseudogene Interval_136304 chr6 52796147 52797795 + 0 NA intron (ENSMUSG00000063568.11, intron 3 of 4) protein_coding-intron (ENSMUSG00000063568.11, intron 3 of 4) 46730 ENSMUSG00000081872.1 ENSMUSG00000081872 ENSMUST00000119248 Gm15572 processed_pseudogene Interval_171002 chr9 113645485 113645948 + 0 NA Intergenic Intergenic -3662 ENSMUSG00000111364.1 ENSMUSG00000111364 ENSMUST00000213455 Gm36745 lincRNA Interval_170985 chr9 113495615 113496687 + 0 NA TTS (ENSMUSG00000109890.2) lincRNA-TTS (ENSMUSG00000109890.2) 12204 ENSMUSG00000109890.2 ENSMUSG00000109890 ENSMUST00000209716 AU023762 lincRNA Interval_44017 chr13 39566358 39566921 + 0 NA Intergenic Intergenic -4944 ENSMUSG00000114841.1 ENSMUSG00000114841 ENSMUST00000224834 Gm47352 lincRNA Interval_138231 chr6 86481844 86482016 + 0 NA Intergenic Intergenic -1100 ENSMUSG00000085589.7 ENSMUSG00000085589 ENSMUST00000154066 A430078I02Rik antisense Interval_63966 chr16 4893434 4894020 + 0 NA intron (ENSMUSG00000022517.17, intron 1 of 16) protein_coding-intron (ENSMUSG00000022517.17, intron 1 of 15) 7341 ENSMUSG00000022517.17 ENSMUSG00000022517 ENSMUST00000230108 Mgrn1 protein_coding Interval_63493 chr15 101437092 101439172 + 0 NA intron (ENSMUSG00000047641.8, intron 1 of 8) protein_coding-intron (ENSMUSG00000047641.8, intron 1 of 8) 672 ENSMUSG00000047641.8 ENSMUSG00000047641 ENSMUST00000081945 Krt87 protein_coding Interval_30367 chr11 93915210 93915397 + 0 NA intron (ENSMUSG00000059474.13, intron 7 of 7) protein_coding-intron (ENSMUSG00000059474.13, intron 5 of 11) -10237 ENSMUSG00000059474.13 ENSMUSG00000059474 ENSMUST00000155841 Mbtd1 protein_coding Interval_130587 chr5 129052016 129053346 + 0 NA Intergenic Intergenic 32479 ENSMUSG00000029430.13 ENSMUSG00000029430 ENSMUST00000111343 Ran protein_coding Interval_79944 chr18 36127436 36127912 + 0 NA intron (ENSMUSG00000060275.14, intron 1 of 9) protein_coding-intron (ENSMUSG00000060275.14, intron 2 of 7) 22023 ENSMUSG00000117852.1 ENSMUSG00000117852 ENSMUST00000235667 4930471G03Rik antisense Interval_158501 chr8 84104118 84105366 + 0 NA promoter-TSS (ENSMUSG00000037103.8) protein_coding-promoter-TSS (ENSMUSG00000037103.8) 26 ENSMUSG00000037103.8 ENSMUSG00000037103 ENSMUST00000210625 Dcaf15 protein_coding Interval_12391 chr1 192869455 192871077 + 0 NA Intergenic Intergenic -14510 ENSMUSG00000016262.14 ENSMUSG00000016262 ENSMUST00000125391 Sertad4 protein_coding Interval_120265 chr4 145034484 145035247 + 0 NA intron (ENSMUSG00000020220.16, intron 47 of 51) protein_coding-intron (ENSMUSG00000020220.16, intron 63 of 67) -76017 ENSMUSG00000103911.1 ENSMUSG00000103911 ENSMUST00000193467 Gm38074 TEC Interval_84253 chr19 9032751 9033941 + 0 NA intron (ENSMUSG00000069833.13, intron 4 of 6) protein_coding-intron (ENSMUSG00000069833.13, intron 4 of 5) 44062 ENSMUSG00000069833.13 ENSMUSG00000069833 ENSMUST00000237033 Ahnak protein_coding Interval_9619 chr1 160308837 160310727 + 0 NA promoter-TSS (ENSMUSG00000026721.16) protein_coding-promoter-TSS (ENSMUSG00000026721.16) 6713 ENSMUSG00000103522.1 ENSMUSG00000103522 ENSMUST00000195414 9430087J23Rik TEC Interval_84173 chr19 8428021 8428288 + 0 NA Intergenic Intergenic -23049 ENSMUSG00000052562.15 ENSMUSG00000052562 ENSMUST00000120540 Slc22a30 protein_coding Interval_44400 chr13 44634340 44636126 + 0 NA Intergenic Intergenic 13051 ENSMUSG00000113730.1 ENSMUSG00000113730 ENSMUST00000221956 Gm47805 lincRNA Interval_146816 chr7 52163820 52164851 + 0 NA Intergenic Intergenic -55625 ENSMUSG00000109026.1 ENSMUSG00000109026 ENSMUST00000209088 Gm44683 processed_pseudogene Interval_156449 chr8 48300783 48301129 + 0 NA promoter-TSS (ENSMUSG00000031561.16) protein_coding-promoter-TSS (ENSMUSG00000031561.16) -29971 ENSMUSG00000110480.1 ENSMUSG00000110480 ENSMUST00000212653 Gm32842 processed_pseudogene Interval_169411 chr9 97055828 97057227 + 0 NA intron (ENSMUSG00000101365.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000101365.1, intron 1 of 2) 10780 ENSMUSG00000101365.1 ENSMUSG00000101365 ENSMUST00000186238 Gm19325 lincRNA Interval_10355 chr1 169926602 169927051 + 0 NA Intergenic Intergenic -3103 ENSMUSG00000070532.5 ENSMUSG00000070532 ENSMUST00000175731 Ccdc190 protein_coding Interval_92661 chr2 62130312 62130514 + 0 NA intron (ENSMUSG00000026904.17, intron 1 of 26) protein_coding-intron (ENSMUSG00000026904.17, intron 1 of 24) -159741 ENSMUSG00000083018.1 ENSMUSG00000083018 ENSMUST00000121668 Gm13555 processed_pseudogene Interval_21458 chr10 128724733 128725883 + 0 NA intron (ENSMUSG00000025357.8, intron 17 of 23) protein_coding-intron (ENSMUSG00000025357.8, intron 17 of 23) 19547 ENSMUSG00000025357.8 ENSMUSG00000025357 ENSMUST00000217957 Dgka protein_coding Interval_65290 chr16 21256143 21257332 + 0 NA promoter-TSS (ENSMUSG00000098400.1) miRNA-promoter-TSS (ENSMUSG00000098400.1) -671 ENSMUSG00000098400.1 ENSMUSG00000098400 ENSMUST00000183640 Mir7680 miRNA Interval_22439 chr11 10107102 10107440 + 0 NA Intergenic Intergenic -132066 ENSMUSG00000082312.1 ENSMUSG00000082312 ENSMUST00000117538 Gm11996 processed_pseudogene Interval_78707 chr18 18286107 18286569 + 0 NA Intergenic Intergenic -42181 ENSMUSG00000117574.1 ENSMUSG00000117574 ENSMUST00000234831 Gm50084 lincRNA Interval_14534 chr10 35075241 35075713 + 0 NA Intergenic Intergenic -36721 ENSMUSG00000077749.1 ENSMUSG00000077749 ENSMUST00000104561 Gm26341 snoRNA Interval_102203 chr3 19428201 19430131 + 0 NA Intergenic Intergenic 98393 ENSMUSG00000089149.1 ENSMUSG00000089149 ENSMUST00000158524 Gm22282 misc_RNA Interval_95021 chr2 103143721 103144995 + 0 NA Intergenic Intergenic -33813 ENSMUSG00000087032.1 ENSMUSG00000087032 ENSMUST00000135348 Gm13874 lincRNA Interval_163671 chr9 23684201 23684826 + 0 NA Intergenic Intergenic -91979 ENSMUSG00000111041.1 ENSMUSG00000111041 ENSMUST00000215669 Gm3011 processed_pseudogene Interval_124755 chr5 53678364 53678661 + 0 NA Intergenic Intergenic 29048 ENSMUSG00000029193.7 ENSMUSG00000029193 ENSMUST00000202946 Cckar protein_coding Interval_109895 chr3 149996813 149997003 + 0 NA Intergenic Intergenic 76634 ENSMUSG00000047676.6 ENSMUSG00000047676 ENSMUST00000057740 Rpsa-ps10 processed_pseudogene Interval_72415 chr17 29681838 29682088 + 0 NA promoter-TSS (ENSMUSG00000024019.18) protein_coding-promoter-TSS (ENSMUSG00000024019.18) 21349 ENSMUSG00000024019.18 ENSMUSG00000024019 ENSMUST00000234666 Cmtr1 protein_coding Interval_129422 chr5 120065488 120066345 + 0 NA Intergenic Intergenic 1581 ENSMUSG00000064617.1 ENSMUSG00000064617 ENSMUST00000082683 n-R5s176 rRNA Interval_60614 chr15 75703624 75704736 + 0 NA promoter-TSS (ENSMUSG00000022580.13) protein_coding-promoter-TSS (ENSMUSG00000022580.13) -6559 ENSMUSG00000022580.13 ENSMUSG00000022580 ENSMUST00000229670 Rhpn1 protein_coding Interval_41774 chr12 118954842 118955490 + 0 NA intron (ENSMUSG00000072791.11, intron 2 of 27) protein_coding-intron (ENSMUSG00000072791.11, intron 2 of 27) -64407 ENSMUSG00000072791.11 ENSMUSG00000072791 ENSMUST00000100982 Abcb5 protein_coding Interval_77906 chr18 5333903 5335073 + 0 NA promoter-TSS (ENSMUSG00000050945.8) protein_coding-promoter-TSS (ENSMUSG00000050945.8) -75 ENSMUSG00000050945.8 ENSMUSG00000050945 ENSMUST00000234411 Zfp438 protein_coding Interval_120518 chr4 149103742 149104700 + 0 NA promoter-TSS (ENSMUSG00000028974.13) protein_coding-promoter-TSS (ENSMUSG00000028974.13) -3548 ENSMUSG00000028974.13 ENSMUSG00000028974 ENSMUST00000153781 Dffa protein_coding Interval_151034 chr7 118066723 118067165 + 0 NA Intergenic Intergenic 48312 ENSMUSG00000008683.16 ENSMUSG00000008683 ENSMUST00000128482 Rps15a protein_coding Interval_5097 chr1 84908101 84909645 + 0 NA intron (ENSMUSG00000026220.6, intron 4 of 4) protein_coding-intron (ENSMUSG00000026220.6, intron 4 of 4) 25984 ENSMUSG00000026220.6 ENSMUSG00000026220 ENSMUST00000186980 Slc16a14 protein_coding Interval_28881 chr11 79019106 79021295 + 0 NA intron (ENSMUSG00000018334.18, intron 16 of 18) protein_coding-intron (ENSMUSG00000018334.18, intron 17 of 18) -3397 ENSMUSG00000085941.1 ENSMUSG00000085941 ENSMUST00000143473 Gm11201 antisense Interval_164234 chr9 33527202 33527500 + 0 NA Intergenic Intergenic -35337 ENSMUSG00000111878.1 ENSMUSG00000111878 ENSMUST00000213509 Gm47777 lincRNA Interval_24073 chr11 29994092 29994742 + 0 NA intron (ENSMUSG00000044072.14, intron 2 of 41) protein_coding-intron (ENSMUSG00000044072.14, intron 2 of 41) 12003 ENSMUSG00000080906.1 ENSMUSG00000080906 ENSMUST00000121962 Gm12095 processed_pseudogene Interval_26862 chr11 61167820 61168261 + 0 NA intron (ENSMUSG00000042506.15, intron 1 of 4) protein_coding-intron (ENSMUSG00000042506.15, intron 2 of 12) 235 ENSMUSG00000042506.15 ENSMUSG00000042506 ENSMUST00000174220 Usp22 protein_coding Interval_155722 chr8 36479859 36480945 + 0 NA intron (ENSMUSG00000039620.17, intron 1 of 5) protein_coding-intron (ENSMUSG00000039620.17, intron 2 of 6) -8789 ENSMUSG00000039620.17 ENSMUSG00000039620 ENSMUST00000125492 Trmt9b protein_coding Interval_6806 chr1 119651587 119652030 + 0 NA TTS (ENSMUSG00000026384.13) protein_coding-TTS (ENSMUSG00000026384.13) -20139 ENSMUSG00000102687.1 ENSMUSG00000102687 ENSMUST00000192036 Gm37219 TEC Interval_139795 chr6 108772771 108773501 + 0 NA Intergenic Intergenic -21761 ENSMUSG00000030105.8 ENSMUSG00000030105 ENSMUST00000204483 Arl8b protein_coding Interval_171147 chr9 114768781 114769044 + 0 NA intron (ENSMUSG00000032436.17, intron 1 of 1) protein_coding-intron (ENSMUSG00000032436.17, intron 1 of 4) 6539 ENSMUSG00000032436.17 ENSMUSG00000032436 ENSMUST00000216760 Cmtm7 protein_coding Interval_148187 chr7 79696154 79696691 + 0 NA intron (ENSMUSG00000046591.10, intron 20 of 20) protein_coding-intron (ENSMUSG00000046591.10, intron 21 of 21) -13949 ENSMUSG00000039133.8 ENSMUSG00000039133 ENSMUST00000197011 9330171B17Rik antisense Interval_125590 chr5 72264277 72264581 + 0 NA promoter-TSS (ENSMUSG00000046808.17) polymorphic_pseudogene-promoter-TSS (ENSMUSG00000046808.17) 41033 ENSMUSG00000089195.1 ENSMUSG00000089195 ENSMUST00000158570 Gm25768 snRNA Interval_31170 chr11 98688066 98688505 + 0 NA intron (ENSMUSG00000017221.14, intron 4 of 7) protein_coding-intron (ENSMUSG00000017221.14, intron 4 of 11) -4870 ENSMUSG00000085955.1 ENSMUSG00000085955 ENSMUST00000122854 Gm12356 processed_transcript Interval_18374 chr10 85378566 85379449 + 0 NA Intergenic Intergenic 45106 ENSMUSG00000087895.1 ENSMUSG00000087895 ENSMUST00000157270 Gm25281 miRNA Interval_164402 chr9 36767151 36768407 + 0 NA promoter-TSS (ENSMUSG00000032116.18) protein_coding-promoter-TSS (ENSMUSG00000032116.18) -108 ENSMUSG00000096993.3 ENSMUSG00000096993 ENSMUST00000180474 Gm26787 antisense Interval_36167 chr12 37450423 37450985 + 0 NA intron (ENSMUSG00000113005.1, intron 3 of 3) protein_coding-intron (ENSMUSG00000050103.18, intron 12 of 12) 5519 ENSMUSG00000050103.18 ENSMUSG00000050103 ENSMUST00000221949 Agmo protein_coding Interval_54628 chr14 72480725 72480892 + 0 NA exon (ENSMUSG00000109446.1, exon 5 of 55) protein_coding-exon (ENSMUSG00000109446.1, exon 5 of 55) 11030 ENSMUSG00000109446.1 ENSMUSG00000109446 ENSMUST00000208955 Gm9195 protein_coding Interval_120561 chr4 149395635 149395853 + 0 NA intron (ENSMUSG00000028960.20, intron 1 of 2) protein_coding-intron (ENSMUSG00000028960.20, intron 2 of 9) 30241 ENSMUSG00000028960.20 ENSMUSG00000028960 ENSMUST00000131986 Ube4b protein_coding Interval_7623 chr1 132563958 132564195 + 0 NA TTS (ENSMUSG00000026442.14) protein_coding-TTS (ENSMUSG00000026442.14) -21211 ENSMUSG00000053024.14 ENSMUSG00000053024 ENSMUST00000186530 Cntn2 protein_coding Interval_121907 chr5 9437933 9438263 + 0 NA intron (ENSMUSG00000056004.16, intron 13 of 21) protein_coding-intron (ENSMUSG00000056004.16, intron 13 of 21) 62394 ENSMUSG00000077896.1 ENSMUSG00000077896 ENSMUST00000104703 Mir879 miRNA Interval_92889 chr2 68218998 68219190 + 0 NA intron (ENSMUSG00000027030.15, intron 2 of 2) protein_coding-intron (ENSMUSG00000027030.15, intron 17 of 17) 137303 ENSMUSG00000081257.1 ENSMUSG00000081257 ENSMUST00000117875 Gm13607 processed_pseudogene Interval_95008 chr2 102979674 102979897 + 0 NA Intergenic Intergenic -78327 ENSMUSG00000005087.17 ENSMUSG00000005087 ENSMUST00000124624 Cd44 protein_coding Interval_146842 chr7 53052483 53052783 + 0 NA Intergenic Intergenic 125563 ENSMUSG00000070203.1 ENSMUSG00000070203 ENSMUST00000093693 Gm22444 snRNA Interval_87675 chr19 54248515 54248788 + 0 NA Intergenic Intergenic 50260 ENSMUSG00000118324.1 ENSMUSG00000118324 ENSMUST00000237525 Gm50187 TEC Interval_50397 chr14 12445232 12445517 + 0 NA intron (ENSMUSG00000054423.14, intron 23 of 28) protein_coding-intron (ENSMUSG00000054423.14, intron 23 of 28) -17733 ENSMUSG00000084541.1 ENSMUSG00000084541 ENSMUST00000122592 n-R5s45 rRNA Interval_33954 chr11 119637120 119638108 + 0 NA intron (ENSMUSG00000025583.15, intron 1 of 32) protein_coding-intron (ENSMUSG00000025583.15, intron 1 of 33) 9016 ENSMUSG00000083870.1 ENSMUSG00000083870 ENSMUST00000121392 Gm11761 processed_pseudogene Interval_11399 chr1 181623187 181624115 + 0 NA intron (ENSMUSG00000047369.17, intron 16 of 84) protein_coding-intron (ENSMUSG00000047369.17, intron 16 of 83) 41698 ENSMUSG00000047369.17 ENSMUSG00000047369 ENSMUST00000195808 Dnah14 protein_coding Interval_115997 chr4 106874456 106874722 + 0 NA Intergenic Intergenic -26669 ENSMUSG00000086940.1 ENSMUSG00000086940 ENSMUST00000151369 Gm12746 lincRNA Interval_87027 chr19 45621825 45622975 + 0 NA intron (ENSMUSG00000040913.11, intron 1 of 1) protein_coding-intron (ENSMUSG00000040913.11, intron 5 of 8) -30558 ENSMUSG00000040913.11 ENSMUSG00000040913 ENSMUST00000159590 Fbxw4 protein_coding Interval_39983 chr12 100226793 100227192 + 0 NA Intergenic Intergenic 13260 ENSMUSG00000113362.1 ENSMUSG00000113362 ENSMUST00000220782 Gm40557 lincRNA Interval_8181 chr1 136299218 136299467 + 0 NA intron (ENSMUSG00000041570.14, intron 3 of 17) protein_coding-intron (ENSMUSG00000041570.14, intron 3 of 18) -17592 ENSMUSG00000041570.14 ENSMUSG00000041570 ENSMUST00000194730 Camsap2 protein_coding Interval_72842 chr17 32514722 32516439 + 0 NA intron (ENSMUSG00000091586.2, intron 2 of 12) protein_coding-intron (ENSMUSG00000091586.2, intron 2 of 12) 9530 ENSMUSG00000091586.2 ENSMUSG00000091586 ENSMUST00000236129 Cyp4f17 protein_coding Interval_123774 chr5 35410601 35411542 + 0 NA Intergenic Intergenic 14973 ENSMUSG00000106970.1 ENSMUSG00000106970 ENSMUST00000201640 Gm43377 TEC Interval_34052 chr11 120208744 120209753 + 0 NA Intergenic Intergenic 7745 ENSMUSG00000086750.1 ENSMUSG00000086750 ENSMUST00000135048 Gm11770 antisense Interval_162968 chr9 13826496 13828349 + 0 NA promoter-TSS (ENSMUSG00000031922.12) protein_coding-promoter-TSS (ENSMUSG00000031922.12) -8513 ENSMUSG00000031922.12 ENSMUSG00000031922 ENSMUST00000124524 Cep57 protein_coding Interval_17193 chr10 74697522 74697828 + 0 NA Intergenic Intergenic -123047 ENSMUSG00000112686.1 ENSMUSG00000112686 ENSMUST00000218638 Gm7034 processed_pseudogene Interval_119723 chr4 139492336 139492602 + 0 NA Intergenic Intergenic -82251 ENSMUSG00000041025.15 ENSMUSG00000041025 ENSMUST00000174078 Iffo2 protein_coding Interval_77016 chr17 85645588 85646711 + 0 NA Intergenic Intergenic -25148 ENSMUSG00000099635.1 ENSMUSG00000099635 ENSMUST00000188560 Gm28528 antisense Interval_18470 chr10 86425182 86425644 + 0 NA intron (ENSMUSG00000059602.14, intron 3 of 8) protein_coding-intron (ENSMUSG00000059602.14, intron 3 of 13) 66484 ENSMUSG00000059602.14 ENSMUSG00000059602 ENSMUST00000139197 Syn3 protein_coding Interval_37280 chr12 64641707 64642021 + 0 NA Intergenic Intergenic -94538 ENSMUSG00000077703.1 ENSMUSG00000077703 ENSMUST00000104515 Gm24066 snoRNA Interval_110842 chr4 8902478 8902741 + 0 NA Intergenic Intergenic -38650 ENSMUSG00000083786.1 ENSMUSG00000083786 ENSMUST00000119493 Rps18-ps2 processed_pseudogene Interval_108773 chr3 131190577 131191455 + 0 NA intron (ENSMUSG00000027985.14, intron 5 of 8) protein_coding-intron (ENSMUSG00000027985.14, intron 5 of 11) 54231 ENSMUSG00000104612.1 ENSMUSG00000104612 ENSMUST00000200349 Gm42449 TEC Interval_2024 chr1 35960973 35962547 + 0 NA Intergenic Intergenic 2841 ENSMUSG00000103096.1 ENSMUSG00000103096 ENSMUST00000191763 Gm8022 processed_pseudogene Interval_36233 chr12 40043761 40045107 + 0 NA Intergenic Intergenic 6335 ENSMUSG00000086315.1 ENSMUSG00000086315 ENSMUST00000135883 Arl4aos antisense Interval_87719 chr19 55393668 55393928 + 0 NA intron (ENSMUSG00000024983.10, intron 5 of 7) protein_coding-intron (ENSMUSG00000024983.10, intron 5 of 7) 77471 ENSMUSG00000024983.10 ENSMUSG00000024983 ENSMUST00000224396 Vti1a protein_coding Interval_10190 chr1 166964583 166965214 + 0 NA Intergenic Intergenic -18540 ENSMUSG00000086925.1 ENSMUSG00000086925 ENSMUST00000145247 Gm6286 processed_pseudogene Interval_145890 chr7 41486150 41486417 + 0 NA intron (ENSMUSG00000074166.7, intron 1 of 3) protein_coding-intron (ENSMUSG00000092592.1, intron 1 of 7) -4068 ENSMUSG00000083500.1 ENSMUSG00000083500 ENSMUST00000119135 Gm15470 processed_pseudogene Interval_156620 chr8 54914804 54915062 + 0 NA Intergenic Intergenic -27783 ENSMUSG00000039375.16 ENSMUSG00000039375 ENSMUST00000176180 Wdr17 protein_coding Interval_80284 chr18 38826303 38826508 + 0 NA intron (ENSMUSG00000118193.1, intron 1 of 5) protein_coding-intron (ENSMUSG00000118193.1, intron 1 of 5) 40598 ENSMUSG00000036585.16 ENSMUSG00000036585 ENSMUST00000134864 Fgf1 protein_coding Interval_10023 chr1 165132105 165132988 + 0 NA Intergenic Intergenic 16403 ENSMUSG00000089967.1 ENSMUSG00000089967 ENSMUST00000162550 Gm16550 processed_pseudogene Interval_89557 chr2 22753521 22753728 + 0 NA Intergenic Intergenic -8348 ENSMUSG00000085353.2 ENSMUSG00000085353 ENSMUST00000169209 1700092C17Rik lincRNA Interval_73765 chr17 43398843 43399878 + 0 NA intron (ENSMUSG00000056492.6, intron 1 of 3) protein_coding-intron (ENSMUSG00000056492.6, intron 1 of 20) 38909 ENSMUSG00000056492.6 ENSMUSG00000056492 ENSMUST00000225004 Adgrf5 protein_coding Interval_56519 chr14 119820547 119821063 + 0 NA intron (ENSMUSG00000053465.6, intron 1 of 1) protein_coding-intron (ENSMUSG00000053465.6, intron 1 of 1) 21827 ENSMUSG00000115639.1 ENSMUSG00000115639 ENSMUST00000228885 4930404K13Rik sense_intronic Interval_28922 chr11 79289136 79289821 + 0 NA Intergenic Intergenic 7428 ENSMUSG00000055072.2 ENSMUSG00000055072 ENSMUST00000068448 Gm9964 TEC Interval_102536 chr3 27584703 27585458 + 0 NA promoter-TSS (ENSMUSG00000092695.1) miRNA-promoter-TSS (ENSMUSG00000092695.1) -85 ENSMUSG00000092695.1 ENSMUSG00000092695 ENSMUST00000174954 Mir3092 miRNA Interval_110771 chr4 8199202 8199429 + 0 NA intron (ENSMUSG00000041261.9, intron 3 of 8) protein_coding-intron (ENSMUSG00000041261.9, intron 3 of 8) -31962 ENSMUSG00000079993.2 ENSMUSG00000079993 ENSMUST00000116110 Gm11799 processed_pseudogene Interval_23370 chr11 21971256 21973080 + 0 NA Intergenic Intergenic 19028 ENSMUSG00000082874.4 ENSMUSG00000082874 ENSMUST00000120694 Rpl15-ps1 processed_pseudogene Interval_121679 chr5 5131957 5132554 + 0 NA exon (ENSMUSG00000028926.15, exon 6 of 6) protein_coding-exon (ENSMUSG00000028926.15, exon 6 of 6) 7852 ENSMUSG00000106054.1 ENSMUSG00000106054 ENSMUST00000199289 Gm43623 processed_transcript Interval_83529 chr18 88881852 88882478 + 0 NA intron (ENSMUSG00000056153.15, intron 2 of 2) protein_coding-intron (ENSMUSG00000056153.15, intron 2 of 2) 12094 ENSMUSG00000056153.15 ENSMUSG00000056153 ENSMUST00000147313 Socs6 protein_coding Interval_151792 chr7 126694745 126696388 + 0 NA promoter-TSS (ENSMUSG00000047721.8) protein_coding-promoter-TSS (ENSMUSG00000047721.8) 179 ENSMUSG00000059772.12 ENSMUSG00000059772 ENSMUST00000155012 Slx1b protein_coding Interval_121834 chr5 8659643 8661026 + 0 NA intron (ENSMUSG00000040584.8, intron 1 of 27) protein_coding-intron (ENSMUSG00000040584.8, intron 1 of 27) -9186 ENSMUSG00000105392.1 ENSMUSG00000105392 ENSMUST00000197663 Gm42684 TEC Interval_157631 chr8 71904448 71904631 + 0 NA Intergenic Intergenic -4096 ENSMUSG00000066880.15 ENSMUSG00000066880 ENSMUST00000119003 Zfp617 protein_coding Interval_130848 chr5 131306239 131308249 + 0 NA promoter-TSS (ENSMUSG00000034040.16) protein_coding-promoter-TSS (ENSMUSG00000034040.16) 834 ENSMUSG00000034040.16 ENSMUSG00000034040 ENSMUST00000162966 Galnt17 protein_coding Interval_156706 chr8 57489480 57490676 + 0 NA intron (ENSMUSG00000096917.2, intron 1 of 2) processed_transcript-intron (ENSMUSG00000096917.2, intron 1 of 2) -2218 ENSMUSG00000031609.3 ENSMUSG00000031609 ENSMUST00000034022 Sap30 protein_coding Interval_73103 chr17 34816442 34816965 + 0 NA intron (ENSMUSG00000015451.16, intron 19 of 40) processed_transcript-intron (ENSMUSG00000015451.16, intron 19 of 41) -5310 ENSMUSG00000015451.16 ENSMUSG00000015451 ENSMUST00000160309 C4a processed_transcript Interval_48985 chr13 106745670 106746132 + 0 NA Intergenic Intergenic 15678 ENSMUSG00000114422.1 ENSMUSG00000114422 ENSMUST00000225713 Gm30411 lincRNA Interval_57667 chr15 14337035 14337437 + 0 NA Intergenic Intergenic -122140 ENSMUSG00000115782.1 ENSMUSG00000115782 ENSMUST00000227703 Gm49116 lincRNA Interval_57979 chr15 25828112 25828924 + 0 NA Intergenic Intergenic 12093 ENSMUSG00000115593.1 ENSMUSG00000115593 ENSMUST00000228649 Gm4824 processed_pseudogene Interval_17595 chr10 78067413 78067696 + 0 NA Intergenic Intergenic -5785 ENSMUSG00000000732.9 ENSMUSG00000000732 ENSMUST00000219633 Icosl protein_coding Interval_133920 chr6 15606955 15608324 + 0 NA Intergenic Intergenic -28485 ENSMUSG00000107703.1 ENSMUSG00000107703 ENSMUST00000204192 Gm44039 TEC Interval_120519 chr4 149115444 149117109 + 0 NA intron (ENSMUSG00000028974.13, intron 3 of 4) protein_coding-intron (ENSMUSG00000028974.13, intron 3 of 5) 8507 ENSMUSG00000028974.13 ENSMUSG00000028974 ENSMUST00000153781 Dffa protein_coding Interval_75163 chr17 64212221 64213034 + 0 NA Intergenic Intergenic 108988 ENSMUSG00000080455.1 ENSMUSG00000080455 ENSMUST00000116805 Gm24194 miRNA Interval_112343 chr4 40716529 40717263 + 0 NA promoter-TSS (ENSMUSG00000082008.1) processed_pseudogene-promoter-TSS (ENSMUSG00000082008.1) 95 ENSMUSG00000082008.1 ENSMUSG00000082008 ENSMUST00000117897 Gm12390 processed_pseudogene Interval_8220 chr1 136576141 136576968 + 0 NA TTS (ENSMUSG00000104509.1) lincRNA-TTS (ENSMUSG00000104509.1) 2923 ENSMUSG00000104509.1 ENSMUSG00000104509 ENSMUST00000193724 Gm33994 lincRNA Interval_134070 chr6 18699150 18700334 + 0 NA Intergenic Intergenic -27550 ENSMUSG00000095722.1 ENSMUSG00000095722 ENSMUST00000180301 Gm23648 snRNA Interval_88872 chr2 11899595 11899922 + 0 NA promoter-TSS (ENSMUSG00000103542.1) unprocessed_pseudogene-promoter-TSS (ENSMUSG00000103542.1) -324 ENSMUSG00000103542.1 ENSMUSG00000103542 ENSMUST00000193884 Gm34768 unprocessed_pseudogene Interval_94997 chr2 102849964 102850306 + 0 NA intron (ENSMUSG00000005087.17, intron 5 of 18) protein_coding-intron (ENSMUSG00000005087.17, intron 5 of 18) -47825 ENSMUSG00000065683.1 ENSMUSG00000065683 ENSMUST00000083749 Gm23731 snRNA Interval_3767 chr1 62964028 62964584 + 0 NA intron (ENSMUSG00000040865.15, intron 11 of 12) protein_coding-intron (ENSMUSG00000040865.15, intron 11 of 12) -61436 ENSMUSG00000104991.1 ENSMUSG00000104991 ENSMUST00000199516 Gm44468 miRNA Interval_88260 chr19 61300556 61300914 + 0 NA Intergenic Intergenic -3666 ENSMUSG00000095993.1 ENSMUSG00000095993 ENSMUST00000179346 Gm21060 protein_coding Interval_148370 chr7 80830271 80831091 + 0 NA Intergenic Intergenic -27418 ENSMUSG00000030536.10 ENSMUSG00000030536 ENSMUST00000205540 Iqgap1 protein_coding Interval_98584 chr2 153394891 153395186 + 0 NA intron (ENSMUSG00000042548.14, intron 9 of 11) protein_coding-intron (ENSMUSG00000042548.14, intron 10 of 12) -18811 ENSMUSG00000082283.1 ENSMUSG00000082283 ENSMUST00000119815 Gm14472 processed_pseudogene Interval_75376 chr17 66233479 66235886 + 0 NA exon (ENSMUSG00000117220.1, exon 1 of 2) lincRNA-exon (ENSMUSG00000117220.1, exon 1 of 2) 1687 ENSMUSG00000117220.1 ENSMUSG00000117220 ENSMUST00000233452 Gm49932 lincRNA Interval_164837 chr9 42377391 42378294 + 0 NA exon (ENSMUSG00000037705.13, exon 8 of 24) protein_coding-exon (ENSMUSG00000037705.13, exon 8 of 24) -8020 ENSMUSG00000110937.1 ENSMUSG00000110937 ENSMUST00000215213 Gm47629 antisense Interval_166956 chr9 64135906 64136159 + 0 NA intron (ENSMUSG00000032401.15, intron 9 of 9) protein_coding-intron (ENSMUSG00000032401.15, intron 13 of 13) 18860 ENSMUSG00000032401.15 ENSMUSG00000032401 ENSMUST00000132018 Lctl protein_coding Interval_108319 chr3 123690255 123691460 + 0 NA promoter-TSS (ENSMUSG00000027977.15) protein_coding-promoter-TSS (ENSMUSG00000027977.15) -2885 ENSMUSG00000104860.1 ENSMUSG00000104860 ENSMUST00000196470 Gm42510 TEC Interval_51330 chr14 26487918 26488916 + 0 NA intron (ENSMUSG00000021870.17, intron 1 of 22) protein_coding-intron (ENSMUSG00000021870.17, intron 1 of 22) -9238 ENSMUSG00000065864.1 ENSMUSG00000065864 ENSMUST00000083930 Gm24031 snoRNA Interval_113447 chr4 55048248 55048809 + 0 NA intron (ENSMUSG00000060206.11, intron 7 of 12) protein_coding-intron (ENSMUSG00000060206.11, intron 5 of 10) -68035 ENSMUSG00000082704.1 ENSMUSG00000082704 ENSMUST00000120116 Gm12515 processed_pseudogene Interval_9332 chr1 156325774 156326009 + 0 NA exon (ENSMUSG00000026602.9, exon 8 of 8) protein_coding-exon (ENSMUSG00000026602.9, exon 8 of 8) 14878 ENSMUSG00000026602.9 ENSMUSG00000026602 ENSMUST00000193020 Nphs2 protein_coding Interval_89072 chr2 15496448 15496771 + 0 NA Intergenic Intergenic 14697 ENSMUSG00000081389.2 ENSMUSG00000081389 ENSMUST00000122443 Gm13368 processed_pseudogene Interval_81314 chr18 57869932 57870303 + 0 NA Intergenic Intergenic -57088 ENSMUSG00000024597.11 ENSMUSG00000024597 ENSMUST00000236673 Slc12a2 protein_coding Interval_115115 chr4 90658037 90658709 + 0 NA Intergenic Intergenic -114003 ENSMUSG00000082502.1 ENSMUSG00000082502 ENSMUST00000117395 Gm12636 processed_pseudogene Interval_119263 chr4 136546731 136547005 + 0 NA TTS (ENSMUSG00000001089.14) protein_coding-TTS (ENSMUSG00000001089.14) 5674 ENSMUSG00000036940.15 ENSMUSG00000036940 ENSMUST00000170979 Kdm1a protein_coding Interval_42140 chr13 9117488 9118303 + 0 NA intron (ENSMUSG00000033499.14, intron 1 of 15) protein_coding-intron (ENSMUSG00000033499.14, intron 1 of 16) 8590 ENSMUSG00000088442.1 ENSMUSG00000088442 ENSMUST00000157817 Gm23553 misc_RNA Interval_109545 chr3 144332412 144333287 + 0 NA Intergenic Intergenic 12635 ENSMUSG00000106266.1 ENSMUSG00000106266 ENSMUST00000198471 Gm43447 lincRNA Interval_31004 chr11 97670076 97671776 + 0 NA intron (ENSMUSG00000038437.11, intron 9 of 20) protein_coding-intron (ENSMUSG00000038437.11, intron 8 of 19) -6134 ENSMUSG00000098881.1 ENSMUSG00000098881 ENSMUST00000184494 Mir6927 miRNA Interval_56828 chr14 122306818 122307642 + 0 NA intron (ENSMUSG00000025545.10, intron 1 of 7) protein_coding-intron (ENSMUSG00000025545.10, intron 1 of 7) 49189 ENSMUSG00000025545.10 ENSMUSG00000025545 ENSMUST00000226136 Clybl protein_coding Interval_171898 chr9 122204665 122205161 + 0 NA intron (ENSMUSG00000037949.8, intron 11 of 12) protein_coding-intron (ENSMUSG00000037949.8, intron 11 of 12) 62464 ENSMUSG00000111434.1 ENSMUSG00000111434 ENSMUST00000213905 Gm47121 sense_intronic Interval_13939 chr10 24842156 24842615 + 0 NA intron (ENSMUSG00000019989.8, intron 1 of 4) protein_coding-intron (ENSMUSG00000019989.8, intron 1 of 5) -6213 ENSMUSG00000019989.8 ENSMUSG00000019989 ENSMUST00000220209 Enpp3 protein_coding Interval_67995 chr16 62846507 62847345 + 0 NA promoter-TSS (ENSMUSG00000022911.11) protein_coding-promoter-TSS (ENSMUSG00000022911.11) 67 ENSMUSG00000022911.11 ENSMUSG00000022911 ENSMUST00000132902 Arl13b protein_coding Interval_15956 chr10 59615824 59617194 + 0 NA TTS (ENSMUSG00000071280.2) antisense-TTS (ENSMUSG00000071280.2) 146 ENSMUSG00000009647.13 ENSMUSG00000009647 ENSMUST00000162012 Mcu protein_coding Interval_48188 chr13 97070993 97072198 + 0 NA promoter-TSS (ENSMUSG00000041817.14) protein_coding-promoter-TSS (ENSMUSG00000041817.14) 4309 ENSMUSG00000041817.14 ENSMUSG00000041817 ENSMUST00000042517 Fam169a protein_coding Interval_25585 chr11 49961365 49962147 + 0 NA intron (ENSMUSG00000020374.16, intron 6 of 13) protein_coding-intron (ENSMUSG00000020374.16, intron 6 of 13) -2029 ENSMUSG00000020374.16 ENSMUSG00000020374 ENSMUST00000109172 Rasgef1c protein_coding Interval_166438 chr9 59471583 59474078 + 0 NA promoter-TSS (ENSMUSG00000090516.1) processed_pseudogene-promoter-TSS (ENSMUSG00000090516.1) -597 ENSMUSG00000090516.1 ENSMUSG00000090516 ENSMUST00000171632 Rps11-ps1 processed_pseudogene Interval_55691 chr14 99068964 99069470 + 0 NA intron (ENSMUSG00000022070.7, intron 11 of 12) protein_coding-intron (ENSMUSG00000022070.7, intron 10 of 11) 9466 ENSMUSG00000033166.11 ENSMUSG00000033166 ENSMUST00000227001 Dis3 protein_coding Interval_61714 chr15 83535277 83536002 + 0 NA intron (ENSMUSG00000016758.4, intron 1 of 4) protein_coding-intron (ENSMUSG00000016758.4, intron 1 of 4) 3037 ENSMUSG00000116217.1 ENSMUSG00000116217 ENSMUST00000229232 Gm46495 processed_pseudogene Interval_45833 chr13 58423193 58423766 + 0 NA Intergenic Intergenic -19542 ENSMUSG00000114654.1 ENSMUSG00000114654 ENSMUST00000225848 Gm47918 lincRNA Interval_22997 chr11 18646748 18647787 + 0 NA intron (ENSMUSG00000085806.1, intron 3 of 6) lincRNA-intron (ENSMUSG00000085806.1, intron 3 of 6) 62955 ENSMUSG00000085806.1 ENSMUSG00000085806 ENSMUST00000145182 Gm12023 lincRNA Interval_43311 chr13 28952117 28953981 + 0 NA exon (ENSMUSG00000076431.4, exon 1 of 1) protein_coding-exon (ENSMUSG00000076431.4, exon 1 of 1) 664 ENSMUSG00000076431.4 ENSMUSG00000076431 ENSMUST00000067230 Sox4 protein_coding Interval_157686 chr8 72295490 72296005 + 0 NA Intergenic Intergenic 9513 ENSMUSG00000070713.5 ENSMUSG00000070713 ENSMUST00000075602 Gm10282 protein_coding Interval_154297 chr8 14110452 14111420 + 0 NA intron (ENSMUSG00000047495.15, intron 1 of 14) protein_coding-intron (ENSMUSG00000047495.15, intron 1 of 15) 15071 ENSMUSG00000047495.15 ENSMUSG00000047495 ENSMUST00000129119 Dlgap2 protein_coding Interval_53428 chr14 57374599 57374858 + 0 NA intron (ENSMUSG00000021947.11, intron 1 of 3) protein_coding-intron (ENSMUSG00000021947.11, intron 2 of 7) 10522 ENSMUSG00000114952.1 ENSMUSG00000114952 ENSMUST00000225457 Gm29717 processed_pseudogene Interval_12070 chr1 189515724 189516232 + 0 NA Intergenic Intergenic 122628 ENSMUSG00000093791.1 ENSMUSG00000093791 ENSMUST00000180257 Gm24092 miRNA Interval_48309 chr13 98003567 98003891 + 0 NA intron (ENSMUSG00000021662.11, intron 9 of 34) protein_coding-intron (ENSMUSG00000021662.11, intron 9 of 35) 12688 ENSMUSG00000021662.11 ENSMUSG00000021662 ENSMUST00000224866 Arhgef28 protein_coding Interval_28671 chr11 77679623 77680916 + 0 NA Intergenic Intergenic -5903 ENSMUSG00000037857.16 ENSMUSG00000037857 ENSMUST00000155238 Nufip2 protein_coding Interval_86210 chr19 37825906 37826813 + 0 NA Intergenic Intergenic 42093 ENSMUSG00000117939.1 ENSMUSG00000117939 ENSMUST00000236017 Gm9067 processed_pseudogene Interval_162216 chr8 126058562 126059736 + 0 NA exon (ENSMUSG00000110437.1, exon 1 of 1) TEC-exon (ENSMUSG00000110437.1, exon 1 of 1) 1375 ENSMUSG00000110437.1 ENSMUSG00000110437 ENSMUST00000212698 Gm45876 TEC Interval_127095 chr5 100267962 100269187 + 0 NA intron (ENSMUSG00000085915.1, intron 2 of 4) unprocessed_pseudogene-intron (ENSMUSG00000085915.1, intron 2 of 4) 57866 ENSMUSG00000100157.6 ENSMUSG00000100157 ENSMUST00000188902 2310034O05Rik lincRNA Interval_136650 chr6 57027698 57027972 + 0 NA Intergenic Intergenic -2511 ENSMUSG00000093696.1 ENSMUSG00000093696 ENSMUST00000176252 Vmn1r7 protein_coding Interval_30570 chr11 95166361 95166807 + 0 NA Intergenic Intergenic -10229 ENSMUSG00000083548.1 ENSMUSG00000083548 ENSMUST00000117670 Gm11514 processed_pseudogene Interval_33949 chr11 119618740 119619163 + 0 NA intron (ENSMUSG00000025583.15, intron 1 of 32) protein_coding-intron (ENSMUSG00000025583.15, intron 1 of 33) 27679 ENSMUSG00000083870.1 ENSMUSG00000083870 ENSMUST00000121392 Gm11761 processed_pseudogene Interval_26356 chr11 57182349 57182552 + 0 NA intron (ENSMUSG00000020524.16, intron 1 of 3) protein_coding-intron (ENSMUSG00000020524.16, intron 2 of 15) 5932 ENSMUSG00000020524.16 ENSMUSG00000020524 ENSMUST00000173531 Gria1 protein_coding Interval_58685 chr15 37040032 37040247 + 0 NA intron (ENSMUSG00000097259.2, intron 5 of 6) antisense-intron (ENSMUSG00000097259.2, intron 5 of 6) 32556 ENSMUSG00000097259.2 ENSMUSG00000097259 ENSMUST00000227544 Gm26766 antisense Interval_118648 chr4 132977135 132977989 + 0 NA intron (ENSMUSG00000028874.14, intron 1 of 12) protein_coding-intron (ENSMUSG00000028874.14, intron 1 of 12) 446 ENSMUSG00000028874.14 ENSMUSG00000028874 ENSMUST00000171223 Fgr protein_coding Interval_18310 chr10 84767423 84767833 + 0 NA intron (ENSMUSG00000020037.15, intron 1 of 3) protein_coding-intron (ENSMUSG00000020037.15, intron 1 of 17) 5390 ENSMUSG00000020037.15 ENSMUSG00000020037 ENSMUST00000095388 Rfx4 protein_coding Interval_39540 chr12 89612587 89613864 + 0 NA intron (ENSMUSG00000066392.12, intron 13 of 18) protein_coding-intron (ENSMUSG00000066392.12, intron 14 of 19) -42498 ENSMUSG00000114153.1 ENSMUSG00000114153 ENSMUST00000222398 Gm48692 TEC Interval_34814 chr12 11668186 11668401 + 0 NA Intergenic Intergenic -1244 ENSMUSG00000111974.1 ENSMUSG00000111974 ENSMUST00000218729 Gm4803 processed_pseudogene Interval_127745 chr5 107287176 107287742 + 0 NA intron (ENSMUSG00000029287.14, intron 1 of 6) protein_coding-intron (ENSMUSG00000029287.14, intron 1 of 16) 2136 ENSMUSG00000029287.14 ENSMUSG00000029287 ENSMUST00000146591 Tgfbr3 protein_coding Interval_113390 chr4 54198306 54198606 + 0 NA Intergenic Intergenic -34778 ENSMUSG00000086987.1 ENSMUSG00000086987 ENSMUST00000156311 Gm12484 lincRNA Interval_116919 chr4 118223096 118224032 + 0 NA intron (ENSMUSG00000033295.14, intron 10 of 24) protein_coding-intron (ENSMUSG00000033295.14, intron 19 of 32) -13000 ENSMUSG00000098596.1 ENSMUSG00000098596 ENSMUST00000184953 Mir7226 miRNA Interval_85310 chr19 24550544 24552784 + 0 NA intron (ENSMUSG00000024867.14, intron 1 of 3) protein_coding-intron (ENSMUSG00000024867.14, intron 1 of 14) 4174 ENSMUSG00000024867.14 ENSMUSG00000024867 ENSMUST00000145829 Pip5k1b protein_coding Interval_123718 chr5 34800654 34801214 + 0 NA intron (ENSMUSG00000029104.15, intron 6 of 17) protein_coding-intron (ENSMUSG00000029104.15, intron 6 of 66) 5146 ENSMUSG00000029104.15 ENSMUSG00000029104 ENSMUST00000124272 Htt protein_coding Interval_11785 chr1 185416834 185417539 + 0 NA intron (ENSMUSG00000026615.14, intron 27 of 31) protein_coding-intron (ENSMUSG00000026615.14, intron 27 of 31) -14827 ENSMUSG00000118510.1 ENSMUSG00000118510 ENSMUST00000238834 AC131980.1 processed_pseudogene Interval_36655 chr12 51784795 51785306 + 0 NA intron (ENSMUSG00000035247.16, intron 17 of 42) protein_coding-intron (ENSMUSG00000035247.16, intron 17 of 42) -2469 ENSMUSG00000035247.16 ENSMUSG00000035247 ENSMUST00000217804 Hectd1 protein_coding Interval_85208 chr19 23776643 23776981 + 0 NA intron (ENSMUSG00000024897.9, intron 1 of 12) protein_coding-intron (ENSMUSG00000024897.9, intron 1 of 12) -23726 ENSMUSG00000118287.1 ENSMUSG00000118287 ENSMUST00000236371 Gm50300 processed_pseudogene Interval_104409 chr3 65391856 65393870 + 0 NA promoter-TSS (ENSMUSG00000027828.12) protein_coding-promoter-TSS (ENSMUSG00000027828.12) -474 ENSMUSG00000048916.7 ENSMUSG00000048916 ENSMUST00000131852 Gm5540 processed_pseudogene Interval_159834 chr8 104204176 104205071 + 0 NA intron (ENSMUSG00000031872.14, intron 3 of 6) protein_coding-intron (ENSMUSG00000031872.14, intron 2 of 4) 13676 ENSMUSG00000110674.1 ENSMUSG00000110674 ENSMUST00000212627 Gm45892 antisense Interval_112389 chr4 41010377 41010669 + 0 NA intron (ENSMUSG00000028423.15, intron 1 of 5) protein_coding-intron (ENSMUSG00000028423.15, intron 15 of 15) 8013 ENSMUSG00000028423.15 ENSMUSG00000028423 ENSMUST00000131305 Nfx1 protein_coding Interval_160765 chr8 112021562 112022290 + 0 NA Intergenic Intergenic -6918 ENSMUSG00000092086.2 ENSMUSG00000092086 ENSMUST00000071732 Gm6793 processed_pseudogene Interval_122907 chr5 27231148 27231448 + 0 NA intron (ENSMUSG00000061576.15, intron 1 of 25) protein_coding-intron (ENSMUSG00000061576.15, intron 1 of 25) 13113 ENSMUSG00000106537.1 ENSMUSG00000106537 ENSMUST00000200263 Gm43502 TEC Interval_22048 chr11 5990455 5991503 + 0 NA intron (ENSMUSG00000057897.14, intron 6 of 10) protein_coding-intron (ENSMUSG00000057897.14, intron 6 of 18) -6841 ENSMUSG00000057897.14 ENSMUSG00000057897 ENSMUST00000129098 Camk2b protein_coding Interval_74524 chr17 52877289 52877963 + 0 NA intron (ENSMUSG00000035580.10, intron 7 of 15) protein_coding-intron (ENSMUSG00000035580.10, intron 7 of 15) -72434 ENSMUSG00000035580.10 ENSMUSG00000035580 ENSMUST00000184279 Kcnh8 protein_coding Interval_28213 chr11 74406182 74406476 + 0 NA intron (ENSMUSG00000038807.19, intron 17 of 25) protein_coding-intron (ENSMUSG00000038807.19, intron 17 of 25) 44260 ENSMUSG00000058275.3 ENSMUSG00000058275 ENSMUST00000077794 Olfr412 protein_coding Interval_132481 chr5 145214538 145215594 + 0 NA intron (ENSMUSG00000055991.15, intron 4 of 4) protein_coding-intron (ENSMUSG00000055991.15, intron 2 of 3) 7462 ENSMUSG00000055991.15 ENSMUSG00000055991 ENSMUST00000160162 Zkscan5 protein_coding Interval_68927 chr16 89050254 89050683 + 0 NA Intergenic Intergenic -2585 ENSMUSG00000062400.3 ENSMUSG00000062400 ENSMUST00000074637 Krtap6-5 protein_coding Interval_34228 chr11 121438862 121439090 + 0 NA intron (ENSMUSG00000025175.12, intron 2 of 3) protein_coding-intron (ENSMUSG00000025175.12, intron 2 of 5) 4008 ENSMUSG00000025175.12 ENSMUSG00000025175 ENSMUST00000103014 Fn3k protein_coding Interval_8219 chr1 136569079 136571327 + 0 NA Intergenic Intergenic 9274 ENSMUSG00000104509.1 ENSMUSG00000104509 ENSMUST00000193724 Gm33994 lincRNA Interval_102538 chr3 27597467 27599065 + 0 NA intron (ENSMUSG00000039286.12, intron 4 of 26) protein_coding-intron (ENSMUSG00000039286.12, intron 3 of 25) -13271 ENSMUSG00000092695.1 ENSMUSG00000092695 ENSMUST00000174954 Mir3092 miRNA Interval_164455 chr9 37144322 37144896 + 0 NA exon (ENSMUSG00000035934.16, exon 1 of 1) protein_coding-exon (ENSMUSG00000035934.16, exon 1 of 1) 1206 ENSMUSG00000035934.16 ENSMUSG00000035934 ENSMUST00000215175 Pknox2 protein_coding Interval_64306 chr16 10369499 10371273 + 0 NA intron (ENSMUSG00000039179.13, intron 5 of 5) protein_coding-intron (ENSMUSG00000039179.13, intron 5 of 6) 25062 ENSMUSG00000039179.13 ENSMUSG00000039179 ENSMUST00000115831 Tekt5 protein_coding Interval_64546 chr16 13211110 13211591 + 0 NA Intergenic Intergenic 78959 ENSMUSG00000022545.13 ENSMUSG00000022545 ENSMUST00000156393 Ercc4 protein_coding Interval_9161 chr1 154204448 154205782 + 0 NA exon (ENSMUSG00000066797.6, exon 2 of 2) protein_coding-exon (ENSMUSG00000066797.6, exon 2 of 2) 3928 ENSMUSG00000066797.6 ENSMUSG00000066797 ENSMUST00000086195 Zfp648 protein_coding Interval_17227 chr10 75129455 75129805 + 0 NA intron (ENSMUSG00000009681.10, intron 2 of 22) protein_coding-intron (ENSMUSG00000009681.10, intron 2 of 22) -46746 ENSMUSG00000009681.10 ENSMUSG00000009681 ENSMUST00000219807 Bcr protein_coding Interval_7545 chr1 132125546 132126250 + 0 NA intron (ENSMUSG00000026437.11, intron 2 of 16) protein_coding-intron (ENSMUSG00000026437.11, intron 1 of 15) -9643 ENSMUSG00000026437.11 ENSMUSG00000026437 ENSMUST00000189733 Cdk18 protein_coding Interval_95651 chr2 113497926 113499209 + 0 NA TTS (ENSMUSG00000044042.19) protein_coding-TTS (ENSMUSG00000044042.19) 5467 ENSMUSG00000087106.1 ENSMUSG00000087106 ENSMUST00000133815 Gm13964 antisense Interval_86097 chr19 36606399 36606628 + 0 NA intron (ENSMUSG00000041180.13, intron 9 of 15) protein_coding-intron (ENSMUSG00000041180.13, intron 14 of 20) 21024 ENSMUSG00000041180.13 ENSMUSG00000041180 ENSMUST00000142404 Hectd2 protein_coding Interval_62968 chr15 98338131 98338323 + 0 NA Intergenic Intergenic 2760 ENSMUSG00000051793.4 ENSMUSG00000051793 ENSMUST00000206647 Olfr284 protein_coding Interval_103434 chr3 41541079 41541931 + 0 NA Intergenic Intergenic -13031 ENSMUSG00000106223.1 ENSMUSG00000106223 ENSMUST00000197509 2400006E01Rik lincRNA Interval_138024 chr6 84344413 84345063 + 0 NA Intergenic Intergenic 79100 ENSMUSG00000107797.1 ENSMUSG00000107797 ENSMUST00000203521 Gm10445 lincRNA Interval_42640 chr13 17646605 17646990 + 0 NA intron (ENSMUSG00000055137.7, intron 5 of 13) protein_coding-intron (ENSMUSG00000055137.7, intron 5 of 13) 47940 ENSMUSG00000055137.7 ENSMUSG00000055137 ENSMUST00000221467 Sugct protein_coding Interval_19124 chr10 94842423 94842731 + 0 NA intron (ENSMUSG00000074785.5, intron 1 of 3) protein_coding-intron (ENSMUSG00000074785.5, intron 14 of 30) -13031 ENSMUSG00000074785.5 ENSMUSG00000074785 ENSMUST00000180573 Plxnc1 protein_coding Interval_86081 chr19 36436295 36436771 + 0 NA promoter-TSS (ENSMUSG00000024805.16) protein_coding-promoter-TSS (ENSMUSG00000024805.16) 14624 ENSMUSG00000114235.1 ENSMUSG00000114235 ENSMUST00000224716 F530104D19Rik antisense Interval_124138 chr5 38620762 38621294 + 0 NA Intergenic Intergenic 45997 ENSMUSG00000086422.1 ENSMUSG00000086422 ENSMUST00000147322 4930421P07Rik processed_pseudogene Interval_156948 chr8 62119101 62119701 + 0 NA intron (ENSMUSG00000031635.14, intron 1 of 7) protein_coding-intron (ENSMUSG00000031635.14, intron 1 of 11) 3749 ENSMUSG00000031635.14 ENSMUSG00000031635 ENSMUST00000210799 Anxa10 protein_coding Interval_54197 chr14 66174315 66176064 + 0 NA exon (ENSMUSG00000059456.13, exon 12 of 31) protein_coding-exon (ENSMUSG00000059456.13, exon 12 of 31) 38363 ENSMUSG00000059456.13 ENSMUSG00000059456 ENSMUST00000127083 Ptk2b protein_coding Interval_116647 chr4 116293184 116293669 + 0 NA intron (ENSMUSG00000111410.1, intron 9 of 9) protein_coding-intron (ENSMUSG00000028698.13, intron 9 of 9) 71808 ENSMUSG00000028698.13 ENSMUSG00000028698 ENSMUST00000106490 Pik3r3 protein_coding Interval_127107 chr5 100343025 100344086 + 0 NA intron (ENSMUSG00000085915.1, intron 1 of 4) unprocessed_pseudogene-intron (ENSMUSG00000085915.1, intron 1 of 4) 11564 ENSMUSG00000085915.1 ENSMUSG00000085915 ENSMUST00000150506 Gm8091 unprocessed_pseudogene Interval_56714 chr14 121588549 121590791 + 0 NA intron (ENSMUSG00000025558.19, intron 38 of 55) protein_coding-intron (ENSMUSG00000025558.19, intron 38 of 53) 66126 ENSMUSG00000115408.1 ENSMUSG00000115408 ENSMUST00000226518 Gm4529 processed_pseudogene Interval_111982 chr4 32950271 32951351 + 0 NA promoter-TSS (ENSMUSG00000040183.13) protein_coding-promoter-TSS (ENSMUSG00000040183.13) -14077 ENSMUSG00000094344.1 ENSMUSG00000094344 ENSMUST00000180255 Gm11942 processed_pseudogene Interval_52117 chr14 36852869 36853184 + 0 NA Intergenic Intergenic 3018 ENSMUSG00000065894.1 ENSMUSG00000065894 ENSMUST00000083960 n-R5s46 rRNA Interval_149763 chr7 101335155 101335919 + 0 NA intron (ENSMUSG00000030688.15, intron 2 of 6) protein_coding-intron (ENSMUSG00000030688.15, intron 2 of 6) -2590 ENSMUSG00000110099.1 ENSMUSG00000110099 ENSMUST00000211610 Gm45344 processed_pseudogene Interval_34223 chr11 121379806 121380489 + 0 NA intron (ENSMUSG00000025170.13, intron 1 of 2) protein_coding-intron (ENSMUSG00000025170.13, intron 1 of 5) 7057 ENSMUSG00000098981.1 ENSMUSG00000098981 ENSMUST00000184435 Mir7236 miRNA Interval_17627 chr10 78326142 78326683 + 0 NA intron (ENSMUSG00000001211.15, intron 2 of 9) protein_coding-intron (ENSMUSG00000001211.15, intron 2 of 9) 12247 ENSMUSG00000065691.1 ENSMUSG00000065691 ENSMUST00000083757 n-R5s77 rRNA Interval_15981 chr10 59848318 59850006 + 0 NA intron (ENSMUSG00000020111.15, intron 10 of 12) protein_coding-intron (ENSMUSG00000020111.15, intron 12 of 13) 22520 ENSMUSG00000112673.1 ENSMUSG00000112673 ENSMUST00000219498 Gm7413 processed_pseudogene Interval_94090 chr2 83767112 83767385 + 0 NA intron (ENSMUSG00000027087.11, intron 6 of 27) protein_coding-intron (ENSMUSG00000027087.11, intron 8 of 29) -7383 ENSMUSG00000085335.1 ENSMUSG00000085335 ENSMUST00000152569 Gm13684 processed_transcript Interval_90751 chr2 32287512 32288728 + 0 NA promoter-TSS (ENSMUSG00000044627.11) protein_coding-promoter-TSS (ENSMUSG00000044627.11) -52 ENSMUSG00000044627.11 ENSMUSG00000044627 ENSMUST00000127131 Swi5 protein_coding Interval_133116 chr5 149964266 149965322 + 0 NA Intergenic Intergenic 38520 ENSMUSG00000107056.1 ENSMUSG00000107056 ENSMUST00000202470 Gm21048 processed_pseudogene Interval_63148 chr15 99386008 99387108 + 0 NA Intergenic Intergenic -18423 ENSMUSG00000095635.1 ENSMUSG00000095635 ENSMUST00000179471 Gm22951 snRNA Interval_113929 chr4 59914232 59915405 + 0 NA exon (ENSMUSG00000028386.1, exon 1 of 4) protein_coding-exon (ENSMUSG00000028386.1, exon 1 of 4) 238 ENSMUSG00000028386.1 ENSMUSG00000028386 ENSMUST00000030081 Slc46a2 protein_coding Interval_93716 chr2 76080223 76081286 + 0 NA intron (ENSMUSG00000075270.11, intron 7 of 14) protein_coding-intron (ENSMUSG00000075270.11, intron 10 of 19) -98787 ENSMUSG00000075271.4 ENSMUSG00000075271 ENSMUST00000099994 Ttc30a1 protein_coding Interval_143434 chr7 6776671 6778032 + 0 NA intron (ENSMUSG00000051527.11, intron 2 of 7) protein_coding-intron (ENSMUSG00000051527.11, intron 2 of 7) 24308 ENSMUSG00000109416.1 ENSMUSG00000109416 ENSMUST00000207613 Gm44863 TEC Interval_93722 chr2 76128234 76129363 + 0 NA intron (ENSMUSG00000075270.11, intron 6 of 14) protein_coding-intron (ENSMUSG00000075270.11, intron 9 of 19) 86596 ENSMUSG00000075270.11 ENSMUSG00000075270 ENSMUST00000144892 Pde11a protein_coding Interval_119393 chr4 137432878 137433125 + 0 NA Intergenic Intergenic 5394 ENSMUSG00000086845.1 ENSMUSG00000086845 ENSMUST00000140495 Gm13010 antisense Interval_30314 chr11 93514101 93515234 + 0 NA intron (ENSMUSG00000056158.14, intron 4 of 8) protein_coding-intron (ENSMUSG00000056158.14, intron 5 of 9) -101343 ENSMUSG00000064743.1 ENSMUSG00000064743 ENSMUST00000082809 Gm24856 snRNA Interval_101009 chr2 174233428 174233799 + 0 NA Intergenic Intergenic -14315 ENSMUSG00000098467.1 ENSMUSG00000098467 ENSMUST00000184218 Gm27591 miRNA Interval_42055 chr13 6991381 6992248 + 0 NA Intergenic Intergenic -65963 ENSMUSG00000113932.1 ENSMUSG00000113932 ENSMUST00000220700 2900024D18Rik TEC Interval_12883 chr10 7197235 7197497 + 0 NA intron (ENSMUSG00000015202.13, intron 1 of 12) protein_coding-intron (ENSMUSG00000015202.13, intron 1 of 12) -61860 ENSMUSG00000015202.13 ENSMUSG00000015202 ENSMUST00000015346 Cnksr3 protein_coding Interval_62217 chr15 88893016 88893244 + 0 NA intron (ENSMUSG00000022388.14, intron 12 of 12) protein_coding-intron (ENSMUSG00000022388.14, intron 12 of 12) -1605 ENSMUSG00000093394.1 ENSMUSG00000093394 ENSMUST00000176338 Gm20621 sense_overlapping Interval_170424 chr9 107872123 107873145 + 0 NA promoter-TSS (ENSMUSG00000032582.14) protein_coding-promoter-TSS (ENSMUSG00000032582.14) 99 ENSMUSG00000032582.14 ENSMUSG00000032582 ENSMUST00000182445 Rbm6 protein_coding Interval_113119 chr4 48458521 48458873 + 0 NA exon (ENSMUSG00000028345.15, exon 8 of 15) protein_coding-exon (ENSMUSG00000028345.15, exon 8 of 15) 14725 ENSMUSG00000028345.15 ENSMUSG00000028345 ENSMUST00000132911 Tex10 protein_coding Interval_142217 chr6 139045883 139046161 + 0 NA Intergenic Intergenic -91105 ENSMUSG00000108178.1 ENSMUSG00000108178 ENSMUST00000204132 Gm44267 TEC Interval_57081 chr15 5871614 5871803 + 0 NA Intergenic Intergenic 5473 ENSMUSG00000115106.1 ENSMUSG00000115106 ENSMUST00000228443 Gm8043 processed_pseudogene Interval_9714 chr1 161232773 161233057 + 0 NA intron (ENSMUSG00000102817.2, intron 24 of 25) transcribed_unprocessed_pseudogene-intron (ENSMUSG00000102817.2, intron 24 of 25) 18247 ENSMUSG00000026701.15 ENSMUSG00000026701 ENSMUST00000130867 Prdx6 protein_coding Interval_150598 chr7 112729501 112731187 + 0 NA intron (ENSMUSG00000055320.18, intron 2 of 2) protein_coding-intron (ENSMUSG00000055320.18, intron 1 of 13) 16393 ENSMUSG00000106046.1 ENSMUSG00000106046 ENSMUST00000199696 Gm44462 miRNA Interval_62789 chr15 96974622 96974876 + 0 NA Intergenic Intergenic 45202 ENSMUSG00000022464.14 ENSMUSG00000022464 ENSMUST00000230907 Slc38a4 protein_coding Interval_48893 chr13 104502123 104502865 + 0 NA Intergenic Intergenic -182437 ENSMUSG00000084860.1 ENSMUSG00000084860 ENSMUST00000131215 2610204G07Rik antisense Interval_58331 chr15 32476200 32476521 + 0 NA intron (ENSMUSG00000022231.10, intron 5 of 7) protein_coding-intron (ENSMUSG00000022231.10, intron 5 of 22) 147145 ENSMUSG00000115063.1 ENSMUSG00000115063 ENSMUST00000227807 4930465K09Rik antisense Interval_168747 chr9 86661304 86662858 + 0 NA intron (ENSMUSG00000032418.15, intron 3 of 13) protein_coding-intron (ENSMUSG00000032418.15, intron 3 of 13) 23127 ENSMUSG00000102259.1 ENSMUSG00000102259 ENSMUST00000193572 Gm38230 TEC Interval_115399 chr4 98648837 98649761 + 0 NA intron (ENSMUSG00000061859.17, intron 32 of 44) protein_coding-intron (ENSMUSG00000061859.17, intron 6 of 15) -12338 ENSMUSG00000076294.1 ENSMUSG00000076294 ENSMUST00000102339 Gm26154 miRNA Interval_146899 chr7 55667057 55667918 + 0 NA Intergenic Intergenic 31034 ENSMUSG00000108363.1 ENSMUSG00000108363 ENSMUST00000206548 Gm44615 processed_pseudogene Interval_41488 chr12 115044905 115045381 + 0 NA Intergenic Intergenic -6623 ENSMUSG00000102453.1 ENSMUSG00000102453 ENSMUST00000191795 Ighv1-48 IG_V_pseudogene Interval_56203 chr14 112298564 112298779 + 0 NA Intergenic Intergenic 30504 ENSMUSG00000115581.1 ENSMUSG00000115581 ENSMUST00000228614 Gm20127 processed_pseudogene Interval_108484 chr3 127565121 127565777 + 0 NA TTS (ENSMUSG00000051278.12) protein_coding-TTS (ENSMUSG00000051278.12) -7888 ENSMUSG00000105104.1 ENSMUSG00000105104 ENSMUST00000196949 Gm43729 antisense Interval_173191 chrX 73975407 73975739 + 0 NA Intergenic Intergenic -28141 ENSMUSG00000031386.14 ENSMUSG00000031386 ENSMUST00000128325 Hcfc1 protein_coding Interval_72547 chr17 30621415 30622494 + 0 NA TTS (ENSMUSG00000099474.1) bidirectional_promoter_lncRNA-TTS (ENSMUSG00000099474.1) 4951 ENSMUSG00000099474.1 ENSMUSG00000099474 ENSMUST00000188852 1700097N02Rik bidirectional_promoter_lncRNA Interval_168787 chr9 87068758 87069374 + 0 NA TTS (ENSMUSG00000032872.16) protein_coding-TTS (ENSMUSG00000032872.16) 46979 ENSMUSG00000032872.16 ENSMUSG00000032872 ENSMUST00000174294 Cyb5r4 protein_coding Interval_3738 chr1 62677329 62679290 + 0 NA Intergenic Intergenic 17470 ENSMUSG00000084333.1 ENSMUSG00000084333 ENSMUST00000118720 Gm11599 processed_pseudogene Interval_112693 chr4 44115754 44116128 + 0 NA Intergenic Intergenic -7297 ENSMUSG00000084274.2 ENSMUSG00000084274 ENSMUST00000148026 Gm12504 transcribed_processed_pseudogene Interval_62630 chr15 95808599 95808858 + 0 NA intron (ENSMUSG00000064210.7, intron 1 of 4) protein_coding-intron (ENSMUSG00000064210.7, intron 1 of 19) -4327 ENSMUSG00000115522.1 ENSMUSG00000115522 ENSMUST00000226780 Gm49173 antisense Interval_152238 chr7 130847024 130847988 + 0 NA intron (ENSMUSG00000030849.18, intron 2 of 6) protein_coding-intron (ENSMUSG00000030849.18, intron 2 of 6) 18824 ENSMUSG00000086108.2 ENSMUSG00000086108 ENSMUST00000146366 Gm5602 antisense Interval_147341 chr7 65981217 65981743 + 0 NA intron (ENSMUSG00000030513.14, intron 10 of 19) protein_coding-intron (ENSMUSG00000030513.14, intron 12 of 21) 28468 ENSMUSG00000030513.14 ENSMUSG00000030513 ENSMUST00000177272 Pcsk6 protein_coding Interval_100887 chr2 173159305 173160358 + 0 NA TTS (ENSMUSG00000027513.11) protein_coding-TTS (ENSMUSG00000027513.11) 6758 ENSMUSG00000027513.11 ENSMUSG00000027513 ENSMUST00000136885 Pck1 protein_coding Interval_124729 chr5 53582389 53584164 + 0 NA intron (ENSMUSG00000039191.12, intron 2 of 6) protein_coding-intron (ENSMUSG00000039191.12, intron 1 of 10) -35954 ENSMUSG00000107111.1 ENSMUSG00000107111 ENSMUST00000202154 Gm40304 antisense Interval_39845 chr12 99002470 99003883 + 0 NA Intergenic Intergenic -10167 ENSMUSG00000114021.1 ENSMUSG00000114021 ENSMUST00000221939 Gm47109 lincRNA Interval_56579 chr14 120477225 120479110 + 0 NA promoter-TSS (ENSMUSG00000051615.14) protein_coding-promoter-TSS (ENSMUSG00000051615.14) -277 ENSMUSG00000051615.14 ENSMUSG00000051615 ENSMUST00000062117 Rap2a protein_coding Interval_146444 chr7 45942653 45943764 + 0 NA intron (ENSMUSG00000040189.18, intron 9 of 12) protein_coding-intron (ENSMUSG00000040189.18, intron 9 of 12) 9358 ENSMUSG00000109673.1 ENSMUSG00000109673 ENSMUST00000210842 Gm9712 processed_pseudogene Interval_39103 chr12 85065708 85065967 + 0 NA intron (ENSMUSG00000021244.15, intron 18 of 19) protein_coding-intron (ENSMUSG00000021244.15, intron 19 of 20) -20537 ENSMUSG00000093629.1 ENSMUSG00000093629 ENSMUST00000177043 Prox2os antisense Interval_89581 chr2 22961670 22962225 + 0 NA intron (ENSMUSG00000058835.14, intron 5 of 10) protein_coding-intron (ENSMUSG00000058835.14, intron 5 of 9) -48115 ENSMUSG00000081861.1 ENSMUSG00000081861 ENSMUST00000121960 Gm14441 processed_pseudogene Interval_145058 chr7 29799798 29799985 + 0 NA promoter-TSS (ENSMUSG00000109565.1) unprocessed_pseudogene-promoter-TSS (ENSMUSG00000109565.1) -95 ENSMUSG00000109565.1 ENSMUSG00000109565 ENSMUST00000208224 Gm6579 unprocessed_pseudogene Interval_117144 chr4 119975028 119975670 + 0 NA intron (ENSMUSG00000028634.17, intron 1 of 1) protein_coding-intron (ENSMUSG00000028634.17, intron 1 of 8) -57417 ENSMUSG00000028634.17 ENSMUSG00000028634 ENSMUST00000166542 Hivep3 protein_coding Interval_162947 chr9 13661626 13662740 + 0 NA promoter-TSS (ENSMUSG00000031925.17) protein_coding-promoter-TSS (ENSMUSG00000031925.17) -277 ENSMUSG00000031925.17 ENSMUSG00000031925 ENSMUST00000177755 Maml2 protein_coding Interval_149468 chr7 98837987 98839397 + 0 NA promoter-TSS (ENSMUSG00000015957.12) protein_coding-promoter-TSS (ENSMUSG00000015957.12) -9114 ENSMUSG00000015957.12 ENSMUSG00000015957 ENSMUST00000208062 Wnt11 protein_coding Interval_26714 chr11 59934001 59934626 + 0 NA Intergenic Intergenic 12814 ENSMUSG00000085551.1 ENSMUSG00000085551 ENSMUST00000130205 1810063I02Rik lincRNA Interval_71707 chr17 25589667 25590025 + 0 NA TTS (ENSMUSG00000002279.19) protein_coding-TTS (ENSMUSG00000002279.19) 10526 ENSMUSG00000002279.19 ENSMUSG00000002279 ENSMUST00000156868 Lmf1 protein_coding Interval_23175 chr11 20338698 20338958 + 0 NA Intergenic Intergenic -2815 ENSMUSG00000078965.5 ENSMUSG00000078965 ENSMUST00000180654 Gm12033 processed_pseudogene Interval_9165 chr1 154292590 154293249 + 0 NA Intergenic Intergenic 18608 ENSMUSG00000064860.1 ENSMUSG00000064860 ENSMUST00000082926 n-R5s220 rRNA Interval_110093 chr3 153248152 153248732 + 0 NA intron (ENSMUSG00000052544.9, intron 3 of 4) protein_coding-intron (ENSMUSG00000052544.9, intron 2 of 2) 50207 ENSMUSG00000105023.1 ENSMUSG00000105023 ENSMUST00000197231 1700012D16Rik sense_intronic Interval_131988 chr5 141870343 141870872 + 0 NA intron (ENSMUSG00000039683.16, intron 1 of 40) protein_coding-intron (ENSMUSG00000039683.16, intron 1 of 40) -254605 ENSMUSG00000085540.1 ENSMUSG00000085540 ENSMUST00000150385 Gm16036 antisense Interval_8178 chr1 136289098 136289812 + 0 NA intron (ENSMUSG00000041570.14, intron 7 of 17) protein_coding-intron (ENSMUSG00000041570.14, intron 8 of 18) -7705 ENSMUSG00000041570.14 ENSMUSG00000041570 ENSMUST00000194730 Camsap2 protein_coding Interval_32457 chr11 107655358 107655617 + 0 NA intron (ENSMUSG00000020721.16, intron 7 of 13) protein_coding-intron (ENSMUSG00000020721.16, intron 22 of 31) -15565 ENSMUSG00000020721.16 ENSMUSG00000020721 ENSMUST00000153080 Helz protein_coding Interval_126459 chr5 88679131 88680092 + 0 NA Intergenic Intergenic -3941 ENSMUSG00000044221.14 ENSMUSG00000044221 ENSMUST00000137725 Grsf1 protein_coding Interval_56703 chr14 121471408 121471671 + 0 NA intron (ENSMUSG00000025557.10, intron 15 of 15) protein_coding-intron (ENSMUSG00000025557.10, intron 17 of 22) -15777 ENSMUSG00000115123.1 ENSMUSG00000115123 ENSMUST00000227451 Gm33299 lincRNA Interval_78162 chr18 9560104 9560339 + 0 NA Intergenic Intergenic 12924 ENSMUSG00000117641.1 ENSMUSG00000117641 ENSMUST00000234100 Gm46641 processed_pseudogene Interval_79546 chr18 33463479 33464504 + 0 NA promoter-TSS (ENSMUSG00000042834.15) protein_coding-promoter-TSS (ENSMUSG00000042834.15) -137 ENSMUSG00000042834.15 ENSMUSG00000042834 ENSMUST00000051087 Nrep protein_coding Interval_70267 chr17 7855156 7856277 + 0 NA Intergenic Intergenic -28414 ENSMUSG00000071984.11 ENSMUSG00000071984 ENSMUST00000167580 Fndc1 protein_coding Interval_43333 chr13 29323012 29323987 + 0 NA intron (ENSMUSG00000006191.17, intron 15 of 16) protein_coding-intron (ENSMUSG00000006191.17, intron 15 of 16) -86879 ENSMUSG00000086423.1 ENSMUSG00000086423 ENSMUST00000137593 Gm11364 sense_intronic Interval_23119 chr11 20035247 20036530 + 0 NA Intergenic Intergenic 77021 ENSMUSG00000020152.7 ENSMUSG00000020152 ENSMUST00000134779 Actr2 protein_coding Interval_43113 chr13 24257273 24257672 + 0 NA intron (ENSMUSG00000021338.17, intron 2 of 5) protein_coding-intron (ENSMUSG00000021338.17, intron 2 of 37) 34333 ENSMUSG00000083409.1 ENSMUSG00000083409 ENSMUST00000119226 Gm11340 processed_pseudogene Interval_159517 chr8 95202737 95203221 + 0 NA promoter-TSS (ENSMUSG00000031788.14) protein_coding-promoter-TSS (ENSMUSG00000031788.14) 64669 ENSMUSG00000110475.1 ENSMUSG00000110475 ENSMUST00000212925 Gm31036 antisense Interval_151931 chr7 127614016 127615770 + 0 NA promoter-TSS (ENSMUSG00000045639.14) protein_coding-promoter-TSS (ENSMUSG00000045639.14) -528 ENSMUSG00000045639.14 ENSMUSG00000045639 ENSMUST00000152315 Zfp629 protein_coding Interval_163110 chr9 15330980 15331166 + 0 NA intron (ENSMUSG00000046111.17, intron 8 of 19) protein_coding-intron (ENSMUSG00000046111.17, intron 1 of 12) 500 ENSMUSG00000089702.1 ENSMUSG00000089702 ENSMUST00000066038 Gm16568 antisense Interval_97883 chr2 144741786 144742406 + 0 NA intron (ENSMUSG00000027430.12, intron 1 of 2) protein_coding-intron (ENSMUSG00000027430.12, intron 4 of 5) -14233 ENSMUSG00000084306.1 ENSMUSG00000084306 ENSMUST00000117385 Gm11743 processed_pseudogene Interval_30613 chr11 95479278 95479982 + 0 NA intron (ENSMUSG00000057522.15, intron 2 of 6) protein_coding-intron (ENSMUSG00000057522.15, intron 5 of 9) 5311 ENSMUSG00000057522.15 ENSMUSG00000057522 ENSMUST00000150922 Spop protein_coding Interval_781 chr1 11001769 11001991 + 0 NA intron (ENSMUSG00000048960.13, intron 1 of 39) protein_coding-intron (ENSMUSG00000048960.13, intron 1 of 39) 8362 ENSMUSG00000048960.13 ENSMUSG00000048960 ENSMUST00000188154 Prex2 protein_coding Interval_156004 chr8 41859786 41860504 + 0 NA intron (ENSMUSG00000102046.1, intron 1 of 5) lincRNA-intron (ENSMUSG00000102046.1, intron 1 of 5) 32878 ENSMUSG00000102046.1 ENSMUSG00000102046 ENSMUST00000188324 2810404M03Rik lincRNA Interval_115262 chr4 94964769 94965067 + 0 NA TTS (ENSMUSG00000062627.9) protein_coding-TTS (ENSMUSG00000062627.9) 5733 ENSMUSG00000062627.9 ENSMUSG00000062627 ENSMUST00000136130 Mysm1 protein_coding Interval_86203 chr19 37777166 37778763 + 0 NA Intergenic Intergenic -6302 ENSMUSG00000117939.1 ENSMUSG00000117939 ENSMUST00000236017 Gm9067 processed_pseudogene Interval_72477 chr17 30053971 30054819 + 0 NA intron (ENSMUSG00000044477.12, intron 1 of 4) protein_coding-intron (ENSMUSG00000044477.12, intron 1 of 4) -49704 ENSMUSG00000117371.1 ENSMUSG00000117371 ENSMUST00000233996 Gm50019 bidirectional_promoter_lncRNA Interval_152855 chr7 138845689 138846952 + 0 NA promoter-TSS (ENSMUSG00000041769.13) protein_coding-promoter-TSS (ENSMUSG00000041769.13) -47 ENSMUSG00000041775.7 ENSMUSG00000041775 ENSMUST00000118810 Mapk1ip1 protein_coding Interval_135974 chr6 49194631 49196579 + 0 NA intron (ENSMUSG00000029814.10, intron 2 of 3) protein_coding-intron (ENSMUSG00000029814.10, intron 2 of 14) 22846 ENSMUSG00000107727.1 ENSMUSG00000107727 ENSMUST00000203553 Gm18010 processed_pseudogene Interval_120535 chr4 149176944 149179092 + 0 NA TTS (ENSMUSG00000063077.15) protein_coding-TTS (ENSMUSG00000063077.15) -11247 ENSMUSG00000028961.15 ENSMUSG00000028961 ENSMUST00000143944 Pgd protein_coding Interval_67427 chr16 48585045 48586351 + 0 NA intron (ENSMUSG00000022652.7, intron 18 of 26) protein_coding-intron (ENSMUSG00000022652.7, intron 18 of 26) 106066 ENSMUSG00000022652.7 ENSMUSG00000022652 ENSMUST00000232195 Morc1 protein_coding Interval_44245 chr13 42871471 42872996 + 0 NA intron (ENSMUSG00000054728.17, intron 1 of 1) protein_coding-intron (ENSMUSG00000054728.17, intron 1 of 11) -2631 ENSMUSG00000085276.3 ENSMUSG00000085276 ENSMUST00000162331 Gm15812 processed_pseudogene Interval_142567 chr6 143337197 143337822 + 0 NA Intergenic Intergenic 91616 ENSMUSG00000072679.10 ENSMUSG00000072679 ENSMUST00000160951 D6Ertd474e lincRNA Interval_174396 chrX 151132728 151133010 + 0 NA Intergenic Intergenic -23738 ENSMUSG00000081942.1 ENSMUSG00000081942 ENSMUST00000119370 Gm15149 processed_pseudogene Interval_64444 chr16 11426985 11427353 + 0 NA intron (ENSMUSG00000071669.14, intron 11 of 20) protein_coding-intron (ENSMUSG00000071669.14, intron 4 of 13) 69137 ENSMUSG00000082653.1 ENSMUSG00000082653 ENSMUST00000117770 Gm15897 processed_pseudogene Interval_152818 chr7 138315296 138316086 + 0 NA intron (ENSMUSG00000091002.2, intron 4 of 6) protein_coding-intron (ENSMUSG00000091002.2, intron 4 of 11) 82039 ENSMUSG00000091002.2 ENSMUSG00000091002 ENSMUST00000162222 Tcerg1l protein_coding Interval_91080 chr2 34874471 34874845 + 0 NA exon (ENSMUSG00000026869.12, exon 1 of 2) protein_coding-exon (ENSMUSG00000026869.12, exon 1 of 2) 182 ENSMUSG00000026870.19 ENSMUSG00000026870 ENSMUST00000028228 Cutal protein_coding Interval_94517 chr2 91853944 91854791 + 0 NA intron (ENSMUSG00000040506.16, intron 11 of 17) protein_coding-intron (ENSMUSG00000040506.16, intron 10 of 16) 66561 ENSMUSG00000075036.1 ENSMUSG00000075036 ENSMUST00000099710 Gm10805 pseudogene Interval_106614 chr3 97761944 97762239 + 0 NA intron (ENSMUSG00000038170.15, intron 8 of 45) protein_coding-intron (ENSMUSG00000038170.15, intron 1 of 16) 31562 ENSMUSG00000105245.1 ENSMUSG00000105245 ENSMUST00000200435 Gm31305 antisense Interval_142289 chr6 140466314 140466525 + 0 NA intron (ENSMUSG00000030231.11, intron 1 of 9) protein_coding-intron (ENSMUSG00000030231.11, intron 3 of 30) 46248 ENSMUSG00000107891.1 ENSMUSG00000107891 ENSMUST00000204085 Gm5051 processed_pseudogene Interval_108192 chr3 122393191 122393835 + 0 NA intron (ENSMUSG00000028121.8, intron 6 of 6) protein_coding-intron (ENSMUSG00000028121.8, intron 6 of 6) -1702 ENSMUSG00000104554.1 ENSMUSG00000104554 ENSMUST00000198222 Gm4610 antisense Interval_49720 chr13 114241663 114241886 + 0 NA exon (ENSMUSG00000114655.1, exon 1 of 1) TEC-exon (ENSMUSG00000114655.1, exon 1 of 1) 866 ENSMUSG00000114655.1 ENSMUSG00000114655 ENSMUST00000225060 4631422I05Rik TEC Interval_68246 chr16 70947016 70948483 + 0 NA Intergenic Intergenic -6539 ENSMUSG00000116800.1 ENSMUSG00000116800 ENSMUST00000232603 Gm29823 lincRNA Interval_13011 chr10 9230721 9231175 + 0 NA Intergenic Intergenic -6197 ENSMUSG00000112543.1 ENSMUSG00000112543 ENSMUST00000218588 Gm48744 TEC Interval_120611 chr4 149696335 149696831 + 0 NA intron (ENSMUSG00000039936.18, intron 1 of 2) protein_coding-intron (ENSMUSG00000039936.18, intron 1 of 23) -22389 ENSMUSG00000039936.18 ENSMUSG00000039936 ENSMUST00000124510 Pik3cd protein_coding Interval_163372 chr9 21130758 21132359 + 0 NA promoter-TSS (ENSMUSG00000032175.11) protein_coding-promoter-TSS (ENSMUSG00000032175.11) -326 ENSMUSG00000032175.11 ENSMUSG00000032175 ENSMUST00000214615 Tyk2 protein_coding Interval_129867 chr5 122810631 122812327 + 0 NA intron (ENSMUSG00000029472.13, intron 5 of 16) protein_coding-intron (ENSMUSG00000029472.13, intron 5 of 16) 9815 ENSMUSG00000029472.13 ENSMUSG00000029472 ENSMUST00000197331 Anapc5 protein_coding Interval_39318 chr12 86678447 86679878 + 0 NA exon (ENSMUSG00000021256.5, exon 1 of 7) protein_coding-exon (ENSMUSG00000021256.5, exon 1 of 7) 462 ENSMUSG00000021256.5 ENSMUSG00000021256 ENSMUST00000021681 Vash1 protein_coding Interval_44802 chr13 48738365 48738960 + 0 NA Intergenic Intergenic 24919 ENSMUSG00000113297.1 ENSMUSG00000113297 ENSMUST00000222192 Rpl17-ps6 processed_pseudogene Interval_66719 chr16 36613578 36615011 + 0 NA intron (ENSMUSG00000022901.13, intron 5 of 7) protein_coding-intron (ENSMUSG00000022901.13, intron 5 of 7) -9775 ENSMUSG00000022901.13 ENSMUSG00000022901 ENSMUST00000145506 Cd86 protein_coding Interval_256 KZ289068.1 345210 346652 + 0 NA NA NA NA NA Interval_115360 chr4 98102865 98103074 + 0 NA intron (ENSMUSG00000028565.18, intron 6 of 6) protein_coding-intron (ENSMUSG00000028565.18, intron 9 of 9) 47292 ENSMUSG00000081096.2 ENSMUSG00000081096 ENSMUST00000120186 Gm12691 transcribed_processed_pseudogene Interval_119611 chr4 138711591 138712021 + 0 NA intron (ENSMUSG00000043621.13, intron 3 of 3) protein_coding-intron (ENSMUSG00000043621.13, intron 3 of 3) 13415 ENSMUSG00000043621.13 ENSMUSG00000043621 ENSMUST00000135156 Ubxn10 protein_coding Interval_32568 chr11 108659893 108660106 + 0 NA intron (ENSMUSG00000020728.17, intron 1 of 5) protein_coding-intron (ENSMUSG00000020728.17, intron 21 of 27) 28036 ENSMUSG00000081016.1 ENSMUSG00000081016 ENSMUST00000121388 Olfr1397-ps1 unprocessed_pseudogene Interval_93182 chr2 70930042 70930250 + 0 NA Intergenic Intergenic 52038 ENSMUSG00000041975.17 ENSMUSG00000041975 ENSMUST00000124273 Mettl8 protein_coding Interval_92530 chr2 60354652 60355656 + 0 NA promoter-TSS (ENSMUSG00000086196.7) antisense-promoter-TSS (ENSMUSG00000086196.7) 16966 ENSMUSG00000086196.7 ENSMUSG00000086196 ENSMUST00000124654 Gm13571 antisense Interval_52422 chr14 45956796 45958652 + 0 NA intron (ENSMUSG00000115000.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000085866.1, intron 1 of 3) 31790 ENSMUSG00000115382.1 ENSMUSG00000115382 ENSMUST00000226223 Gm46475 processed_pseudogene Interval_111291 chr4 17339363 17339631 + 0 NA Intergenic Intergenic -83136 ENSMUSG00000083572.1 ENSMUSG00000083572 ENSMUST00000121293 Gm11849 processed_pseudogene Interval_133042 chr5 149483505 149484661 + 0 NA Intergenic Intergenic 18969 ENSMUSG00000106879.1 ENSMUSG00000106879 ENSMUST00000201267 Gm2566 processed_pseudogene Interval_3476 chr1 58697534 58698114 + 0 NA Intergenic Intergenic -4485 ENSMUSG00000101046.1 ENSMUSG00000101046 ENSMUST00000190385 Gm28803 processed_pseudogene Interval_141730 chr6 134086243 134087606 + 0 NA exon (ENSMUSG00000108238.1, exon 1 of 1) TEC-exon (ENSMUSG00000108238.1, exon 1 of 1) 2323 ENSMUSG00000108238.1 ENSMUSG00000108238 ENSMUST00000204572 Gm43984 TEC Interval_159038 chr8 89002256 89004255 + 0 NA Intergenic Intergenic -21480 ENSMUSG00000099078.1 ENSMUSG00000099078 ENSMUST00000183771 Mir8110 miRNA Interval_5090 chr1 84874150 84874422 + 0 NA intron (ENSMUSG00000073633.9, intron 1 of 3) protein_coding-intron (ENSMUSG00000073633.9, intron 1 of 3) 5135 ENSMUSG00000073633.9 ENSMUSG00000073633 ENSMUST00000151737 Fbxo36 protein_coding Interval_103955 chr3 55461293 55462133 + 0 NA promoter-TSS (ENSMUSG00000027797.15) protein_coding-promoter-TSS (ENSMUSG00000027797.15) -259 ENSMUSG00000027797.15 ENSMUSG00000027797 ENSMUST00000198821 Dclk1 protein_coding Interval_141031 chr6 124481455 124481760 + 0 NA Intergenic Intergenic -11506 ENSMUSG00000038527.9 ENSMUSG00000038527 ENSMUST00000049124 C1rl protein_coding Interval_48343 chr13 98353853 98356036 + 0 NA exon (ENSMUSG00000078302.5, exon 1 of 1) protein_coding-exon (ENSMUSG00000078302.5, exon 1 of 1) 702 ENSMUSG00000078302.5 ENSMUSG00000078302 ENSMUST00000105098 Foxd1 protein_coding Interval_64188 chr16 8922686 8923532 + 0 NA promoter-TSS (ENSMUSG00000068674.3) processed_pseudogene-promoter-TSS (ENSMUSG00000068674.3) -720 ENSMUSG00000068674.3 ENSMUSG00000068674 ENSMUST00000090395 Gm10247 processed_pseudogene Interval_139519 chr6 100725680 100726001 + 0 NA promoter-TSS (ENSMUSG00000084157.2) processed_pseudogene-promoter-TSS (ENSMUSG00000084157.2) -394 ENSMUSG00000084157.2 ENSMUSG00000084157 ENSMUST00000117806 Gm15576 processed_pseudogene Interval_107974 chr3 118218819 118219108 + 0 NA Intergenic Intergenic -214894 ENSMUSG00000065569.2 ENSMUSG00000065569 ENSMUST00000083635 Mir137 miRNA Interval_157885 chr8 75218039 75218543 + 0 NA intron (ENSMUSG00000034472.13, intron 1 of 2) protein_coding-intron (ENSMUSG00000034472.13, intron 1 of 2) 4347 ENSMUSG00000034472.13 ENSMUSG00000034472 ENSMUST00000132133 Rasd2 protein_coding Interval_74843 chr17 56833197 56834133 + 0 NA Intergenic Intergenic -2726 ENSMUSG00000024206.15 ENSMUSG00000024206 ENSMUST00000233643 Rfx2 protein_coding Interval_145807 chr7 39478565 39479063 + 0 NA Intergenic Intergenic -10624 ENSMUSG00000100490.1 ENSMUSG00000100490 ENSMUST00000189105 Gm28455 unprocessed_pseudogene Interval_65709 chr16 25797597 25798101 + 0 NA intron (ENSMUSG00000022510.14, intron 3 of 13) protein_coding-intron (ENSMUSG00000022510.14, intron 3 of 12) 71153 ENSMUSG00000098103.1 ENSMUSG00000098103 ENSMUST00000182783 Gm27005 processed_pseudogene Interval_63445 chr15 101133680 101134702 + 0 NA promoter-TSS (ENSMUSG00000000530.16) protein_coding-promoter-TSS (ENSMUSG00000000530.16) -2599 ENSMUSG00000087690.1 ENSMUSG00000087690 ENSMUST00000153253 Gm16031 antisense Interval_153306 chr7 143490336 143491070 + 0 NA intron (ENSMUSG00000000154.16, intron 3 of 6) protein_coding-intron (ENSMUSG00000000154.16, intron 5 of 10) 12447 ENSMUSG00000010760.5 ENSMUSG00000010760 ENSMUST00000207561 Phlda2 protein_coding Interval_102169 chr3 19125328 19126035 + 0 NA Intergenic Intergenic 18218 ENSMUSG00000103135.1 ENSMUSG00000103135 ENSMUST00000193065 Gm37979 TEC Interval_22108 chr11 6388708 6389839 + 0 NA promoter-TSS (ENSMUSG00000041164.15) protein_coding-promoter-TSS (ENSMUSG00000041164.15) -7456 ENSMUSG00000041164.15 ENSMUSG00000041164 ENSMUST00000124588 Zmiz2 protein_coding Interval_37315 chr12 65084291 65085084 + 0 NA intron (ENSMUSG00000055884.8, intron 3 of 10) protein_coding-intron (ENSMUSG00000055884.8, intron 3 of 22) -8372 ENSMUSG00000114157.1 ENSMUSG00000114157 ENSMUST00000223519 Gm47870 TEC Interval_24549 chr11 34297437 34298242 + 0 NA intron (ENSMUSG00000020143.15, intron 30 of 34) protein_coding-intron (ENSMUSG00000020143.15, intron 30 of 51) -1868 ENSMUSG00000087122.1 ENSMUSG00000087122 ENSMUST00000147359 4930403D09Rik antisense Interval_154831 chr8 24036753 24036950 + 0 NA intron (ENSMUSG00000037492.16, intron 6 of 7) protein_coding-intron (ENSMUSG00000037492.16, intron 6 of 6) -137053 ENSMUSG00000053979.4 ENSMUSG00000053979 ENSMUST00000066740 A730045E13Rik lincRNA Interval_136704 chr6 58173645 58174272 + 0 NA Intergenic Intergenic -18363 ENSMUSG00000107521.1 ENSMUSG00000107521 ENSMUST00000203809 Gm43994 lincRNA Interval_165709 chr9 51278146 51279603 + 0 NA promoter-TSS (ENSMUSG00000079559.5) protein_coding-promoter-TSS (ENSMUSG00000079559.5) 361 ENSMUSG00000044694.2 ENSMUSG00000044694 ENSMUST00000050829 2010007H06Rik antisense Interval_115469 chr4 99207415 99207997 + 0 NA intron (ENSMUSG00000028550.15, intron 1 of 10) protein_coding-intron (ENSMUSG00000028550.15, intron 1 of 10) 13559 ENSMUSG00000028550.15 ENSMUSG00000028550 ENSMUST00000152121 Atg4c protein_coding Interval_90569 chr2 31199541 31200338 + 0 NA intron (ENSMUSG00000000194.13, intron 1 of 1) protein_coding-intron (ENSMUSG00000000194.13, intron 14 of 17) 10248 ENSMUSG00000088891.1 ENSMUSG00000088891 ENSMUST00000158266 Gm22516 snoRNA Interval_148020 chr7 78267244 78267993 + 0 NA intron (ENSMUSG00000059146.12, intron 12 of 18) protein_coding-intron (ENSMUSG00000059146.12, intron 12 of 16) 13322 ENSMUSG00000108788.1 ENSMUSG00000108788 ENSMUST00000206993 4921513I08Rik antisense Interval_110204 chr3 154258351 154258764 + 0 NA intron (ENSMUSG00000028360.10, intron 15 of 21) protein_coding-intron (ENSMUSG00000028360.10, intron 15 of 21) -9057 ENSMUSG00000106500.1 ENSMUSG00000106500 ENSMUST00000200319 Gm42540 TEC Interval_21491 chr10 128895591 128896240 + 0 NA Intergenic Intergenic -4197 ENSMUSG00000025352.6 ENSMUSG00000025352 ENSMUST00000026408 Gdf11 protein_coding Interval_144943 chr7 29032585 29033191 + 0 NA intron (ENSMUSG00000030592.18, intron 92 of 108) protein_coding-intron (ENSMUSG00000030592.18, intron 89 of 105) 3865 ENSMUSG00000109017.1 ENSMUSG00000109017 ENSMUST00000207099 Gm38979 antisense Interval_136479 chr6 54833712 54833948 + 0 NA intron (ENSMUSG00000058446.14, intron 1 of 3) protein_coding-intron (ENSMUSG00000058446.14, intron 1 of 4) 16560 ENSMUSG00000058446.14 ENSMUSG00000058446 ENSMUST00000127331 Znrf2 protein_coding Interval_47788 chr13 92750910 92752551 + 0 NA exon (ENSMUSG00000021702.7, exon 22 of 22) protein_coding-exon (ENSMUSG00000021702.7, exon 22 of 22) 23244 ENSMUSG00000021702.7 ENSMUSG00000021702 ENSMUST00000168299 Thbs4 protein_coding Interval_90021 chr2 27377651 27378326 + 0 NA intron (ENSMUSG00000009621.18, intron 1 of 29) protein_coding-intron (ENSMUSG00000009621.18, intron 2 of 27) -23864 ENSMUSG00000076364.1 ENSMUSG00000076364 ENSMUST00000102409 Gm24049 miRNA Interval_144139 chr7 19603963 19604779 + 0 NA promoter-TSS (ENSMUSG00000061028.7) protein_coding-promoter-TSS (ENSMUSG00000061028.7) -18513 ENSMUSG00000061028.7 ENSMUSG00000061028 ENSMUST00000207325 Clasrp protein_coding Interval_165529 chr9 49049108 49049296 + 0 NA promoter-TSS (ENSMUSG00000105298.1) processed_pseudogene-promoter-TSS (ENSMUSG00000105298.1) -908 ENSMUSG00000105298.1 ENSMUSG00000105298 ENSMUST00000197641 Cldn25-ps processed_pseudogene Interval_45741 chr13 57537153 57538209 + 0 NA intron (ENSMUSG00000056222.15, intron 6 of 10) protein_coding-intron (ENSMUSG00000056222.15, intron 4 of 9) 261003 ENSMUSG00000114411.1 ENSMUSG00000114411 ENSMUST00000224461 Gm48176 processed_pseudogene Interval_20975 chr10 122942455 122943485 + 0 NA exon (ENSMUSG00000034613.12, exon 10 of 10) protein_coding-exon (ENSMUSG00000034613.12, exon 10 of 10) 42754 ENSMUSG00000065406.3 ENSMUSG00000065406 ENSMUST00000083472 Mirlet7i miRNA Interval_20012 chr10 111972183 111973249 + 0 NA promoter-TSS (ENSMUSG00000063334.16) protein_coding-promoter-TSS (ENSMUSG00000063334.16) -77 ENSMUSG00000063334.16 ENSMUSG00000063334 ENSMUST00000174653 Krr1 protein_coding Interval_67098 chr16 42914509 42915047 + 0 NA intron (ENSMUSG00000022708.16, intron 2 of 7) protein_coding-intron (ENSMUSG00000022708.16, intron 1 of 14) -2713 ENSMUSG00000116903.1 ENSMUSG00000116903 ENSMUST00000231971 Gm19522 antisense Interval_114880 chr4 86673722 86674849 + 0 NA Intergenic Intergenic -15602 ENSMUSG00000028494.12 ENSMUSG00000028494 ENSMUST00000134094 Plin2 protein_coding Interval_27715 chr11 69621789 69623860 + 0 NA intron (ENSMUSG00000069835.10, intron 3 of 3) protein_coding-intron (ENSMUSG00000069835.10, intron 4 of 6) 772 ENSMUSG00000069835.10 ENSMUSG00000069835 ENSMUST00000092969 Sat2 protein_coding Interval_106311 chr3 95295480 95297090 + 0 NA TTS (ENSMUSG00000038712.16) protein_coding-TTS (ENSMUSG00000038712.16) 8337 ENSMUSG00000038712.16 ENSMUSG00000038712 ENSMUST00000133762 Mindy1 protein_coding Interval_172216 chrX 9925335 9925856 + 0 NA intron (ENSMUSG00000054453.11, intron 4 of 15) protein_coding-intron (ENSMUSG00000054453.11, intron 4 of 16) 39973 ENSMUSG00000054453.11 ENSMUSG00000054453 ENSMUST00000086165 Sytl5 protein_coding Interval_105976 chr3 90396304 90397130 + 0 NA intron (ENSMUSG00000027933.11, intron 7 of 15) protein_coding-intron (ENSMUSG00000027933.11, intron 20 of 29) 6497 ENSMUSG00000027933.11 ENSMUSG00000027933 ENSMUST00000198562 Ints3 protein_coding Interval_91128 chr2 35291992 35292498 + 0 NA intron (ENSMUSG00000026879.14, intron 6 of 14) protein_coding-intron (ENSMUSG00000026879.14, intron 4 of 16) 11855 ENSMUSG00000106961.1 ENSMUSG00000106961 ENSMUST00000202212 Gm43128 TEC Interval_54161 chr14 65824596 65826145 + 0 NA TTS (ENSMUSG00000022034.10) protein_coding-TTS (ENSMUSG00000022034.10) 8538 ENSMUSG00000022034.10 ENSMUSG00000022034 ENSMUST00000225853 Esco2 protein_coding Interval_51128 chr14 23913763 23914297 + 0 NA intron (ENSMUSG00000063142.15, intron 1 of 16) protein_coding-intron (ENSMUSG00000063142.15, intron 1 of 29) -90961 ENSMUSG00000114953.1 ENSMUSG00000114953 ENSMUST00000223837 4930519K11Rik bidirectional_promoter_lncRNA Interval_125820 chr5 74640718 74641046 + 0 NA intron (ENSMUSG00000029228.15, intron 2 of 10) protein_coding-intron (ENSMUSG00000029228.15, intron 1 of 10) 36747 ENSMUSG00000029228.15 ENSMUSG00000029228 ENSMUST00000140084 Lnx1 protein_coding Interval_1512 chr1 24492887 24493145 + 0 NA intron (ENSMUSG00000026141.13, intron 11 of 50) protein_coding-intron (ENSMUSG00000026141.13, intron 11 of 47) -40271 ENSMUSG00000026141.13 ENSMUSG00000026141 ENSMUST00000051344 Col19a1 protein_coding Interval_65369 chr16 21946782 21947904 + 0 NA intron (ENSMUSG00000022856.9, intron 1 of 4) protein_coding-intron (ENSMUSG00000022856.9, intron 1 of 4) 188 ENSMUSG00000022856.9 ENSMUSG00000022856 ENSMUST00000232635 Tmem41a protein_coding Interval_43325 chr13 29198298 29198641 + 0 NA intron (ENSMUSG00000006191.17, intron 15 of 16) protein_coding-intron (ENSMUSG00000006191.17, intron 15 of 16) 38151 ENSMUSG00000086423.1 ENSMUSG00000086423 ENSMUST00000137593 Gm11364 sense_intronic Interval_44016 chr13 39544575 39545273 + 0 NA Intergenic Intergenic -11821 ENSMUSG00000114221.1 ENSMUSG00000114221 ENSMUST00000224895 Gm47351 lincRNA Interval_20725 chr10 120551918 120553591 + 0 NA Intergenic Intergenic -52783 ENSMUSG00000088924.1 ENSMUSG00000088924 ENSMUST00000158299 Gm24298 snoRNA Interval_91771 chr2 49438650 49439304 + 0 NA Intergenic Intergenic -40462 ENSMUSG00000077769.1 ENSMUSG00000077769 ENSMUST00000104581 Gm25215 snoRNA Interval_72928 chr17 33571681 33571912 + 0 NA intron (ENSMUSG00000024300.17, intron 1 of 3) protein_coding-intron (ENSMUSG00000024300.17, intron 1 of 27) -26345 ENSMUSG00000024300.17 ENSMUSG00000024300 ENSMUST00000235099 Myo1f protein_coding Interval_168974 chr9 89879444 89880101 + 0 NA Intergenic Intergenic -30140 ENSMUSG00000032356.12 ENSMUSG00000032356 ENSMUST00000190073 Rasgrf1 protein_coding Interval_155010 chr8 25663726 25663924 + 0 NA TTS (ENSMUSG00000054823.16) protein_coding-TTS (ENSMUSG00000054823.16) -15125 ENSMUSG00000088176.1 ENSMUSG00000088176 ENSMUST00000157551 Gm23094 misc_RNA Interval_78702 chr18 18058358 18059403 + 0 NA Intergenic Intergenic -40680 ENSMUSG00000093274.1 ENSMUSG00000093274 ENSMUST00000175533 Gm26235 miRNA Interval_149937 chr7 102909373 102909590 + 0 NA exon (ENSMUSG00000043310.4, exon 1 of 1) protein_coding-exon (ENSMUSG00000043310.4, exon 1 of 1) 8055 ENSMUSG00000043310.4 ENSMUSG00000043310 ENSMUST00000061738 Olfr571 protein_coding Interval_97185 chr2 132114129 132114651 + 0 NA intron (ENSMUSG00000027340.15, intron 1 of 6) protein_coding-intron (ENSMUSG00000027340.15, intron 1 of 15) 14521 ENSMUSG00000082990.1 ENSMUSG00000082990 ENSMUST00000121434 Gm14052 processed_pseudogene Interval_29231 chr11 81810287 81810614 + 0 NA intron (ENSMUSG00000020704.13, intron 1 of 9) protein_coding-intron (ENSMUSG00000020704.13, intron 1 of 9) -50223 ENSMUSG00000020703.3 ENSMUSG00000020703 ENSMUST00000021044 5530401A14Rik protein_coding Interval_34402 chr12 3884939 3885766 + 0 NA promoter-TSS (ENSMUSG00000020661.15) protein_coding-promoter-TSS (ENSMUSG00000020661.15) -23108 ENSMUSG00000073242.4 ENSMUSG00000073242 ENSMUST00000144896 Dnmt3aos antisense Interval_134288 chr6 24606833 24607134 + 0 NA Intergenic Intergenic 9221 ENSMUSG00000029683.7 ENSMUSG00000029683 ENSMUST00000031694 Lmod2 protein_coding Interval_3414 chr1 58139167 58139507 + 0 NA TTS (ENSMUSG00000064294.12) protein_coding-TTS (ENSMUSG00000064294.12) 15751 ENSMUSG00000089275.1 ENSMUSG00000089275 ENSMUST00000158650 Gm24548 snoRNA Interval_80805 chr18 47354127 47355644 + 0 NA intron (ENSMUSG00000019647.16, intron 1 of 16) protein_coding-intron (ENSMUSG00000019647.16, intron 1 of 18) -21537 ENSMUSG00000019647.16 ENSMUSG00000019647 ENSMUST00000144223 Sema6a protein_coding Interval_86098 chr19 36629773 36630279 + 0 NA intron (ENSMUSG00000087579.7, intron 3 of 4) antisense-intron (ENSMUSG00000087579.7, intron 3 of 4) 28558 ENSMUSG00000087579.7 ENSMUSG00000087579 ENSMUST00000128603 Hectd2os antisense Interval_33425 chr11 116480106 116480462 + 0 NA intron (ENSMUSG00000015869.16, intron 3 of 4) protein_coding-intron (ENSMUSG00000015869.16, intron 3 of 9) 10030 ENSMUSG00000015869.16 ENSMUSG00000015869 ENSMUST00000144154 Prpsap1 protein_coding Interval_90600 chr2 31383041 31383576 + 0 NA intron (ENSMUSG00000055632.18, intron 26 of 97) protein_coding-intron (ENSMUSG00000055632.18, intron 26 of 97) 68893 ENSMUSG00000055632.18 ENSMUSG00000055632 ENSMUST00000141294 Hmcn2 protein_coding Interval_132610 chr5 146723620 146723988 + 0 NA Intergenic Intergenic 17182 ENSMUSG00000106020.1 ENSMUSG00000106020 ENSMUST00000197707 4930573C15Rik lincRNA Interval_7365 chr1 130512733 130513780 + 0 NA intron (ENSMUSG00000085526.1, intron 1 of 4) antisense-intron (ENSMUSG00000085526.1, intron 1 of 4) 39513 ENSMUSG00000103751.1 ENSMUSG00000103751 ENSMUST00000193111 Gm37283 TEC Interval_77895 chr18 5097256 5097803 + 0 NA exon (ENSMUSG00000024236.18, exon 24 of 35) protein_coding-exon (ENSMUSG00000024236.18, exon 24 of 35) 62363 ENSMUSG00000024236.18 ENSMUSG00000024236 ENSMUST00000129543 Svil protein_coding Interval_48851 chr13 104042873 104043083 + 0 NA intron (ENSMUSG00000021710.11, intron 9 of 11) protein_coding-intron (ENSMUSG00000021710.11, intron 9 of 12) -8405 ENSMUSG00000021710.11 ENSMUSG00000021710 ENSMUST00000224086 Nln protein_coding Interval_154366 chr8 15018411 15019561 + 0 NA promoter-TSS (ENSMUSG00000098322.1) antisense-promoter-TSS (ENSMUSG00000098322.1) -79 ENSMUSG00000098322.1 ENSMUSG00000098322 ENSMUST00000184288 5830468F06Rik antisense Interval_38493 chr12 79534910 79536334 + 0 NA intron (ENSMUSG00000059060.15, intron 1 of 2) protein_coding-intron (ENSMUSG00000059060.15, intron 7 of 10) 208269 ENSMUSG00000059060.15 ENSMUSG00000059060 ENSMUST00000221257 Rad51b protein_coding Interval_133486 chr6 5593987 5594370 + 0 NA Intergenic Intergenic -97917 ENSMUSG00000019577.6 ENSMUSG00000019577 ENSMUST00000134068 Pdk4 protein_coding Interval_46867 chr13 72859002 72859313 + 0 NA Intergenic Intergenic -42394 ENSMUSG00000113082.1 ENSMUSG00000113082 ENSMUST00000223149 D730050B12Rik lincRNA Interval_165608 chr9 50333264 50333972 + 0 NA Intergenic Intergenic 11350 ENSMUSG00000058443.5 ENSMUSG00000058443 ENSMUST00000076364 Rpl10-ps3 protein_coding Interval_37455 chr12 69094478 69095901 + 0 NA Intergenic Intergenic 25158 ENSMUSG00000113716.1 ENSMUSG00000113716 ENSMUST00000222118 Gm47518 lincRNA Interval_150451 chr7 110731351 110731894 + 0 NA Intergenic Intergenic -18225 ENSMUSG00000109749.1 ENSMUSG00000109749 ENSMUST00000209719 Gm18907 processed_pseudogene Interval_2910 chr1 49516948 49517568 + 0 NA Intergenic Intergenic 18705 ENSMUSG00000099577.1 ENSMUSG00000099577 ENSMUST00000185858 Gm3605 processed_pseudogene Interval_110147 chr3 153724556 153725503 + 0 NA promoter-TSS (ENSMUSG00000052544.9) protein_coding-promoter-TSS (ENSMUSG00000052544.9) 16118 ENSMUSG00000089237.1 ENSMUSG00000089237 ENSMUST00000158612 Gm22206 snoRNA Interval_52011 chr14 34614698 34615858 + 0 NA Intergenic Intergenic -23439 ENSMUSG00000021799.9 ENSMUSG00000021799 ENSMUST00000022331 Opn4 protein_coding Interval_4579 chr1 75226660 75228205 + 0 NA intron (ENSMUSG00000096094.2, intron 1 of 2) protein_coding-intron (ENSMUSG00000096094.2, intron 1 of 2) -2120 ENSMUSG00000118482.1 ENSMUSG00000118482 ENSMUST00000238775 Gm50472 processed_pseudogene Interval_132647 chr5 146933632 146934115 + 0 NA Intergenic Intergenic -14784 ENSMUSG00000016503.18 ENSMUSG00000016503 ENSMUST00000133296 Gtf3a protein_coding Interval_15316 chr10 44456950 44457484 + 0 NA promoter-TSS (ENSMUSG00000038151.13) protein_coding-promoter-TSS (ENSMUSG00000038151.13) -7 ENSMUSG00000038151.13 ENSMUSG00000038151 ENSMUST00000167340 Prdm1 protein_coding Interval_114172 chr4 65654573 65655897 + 0 NA intron (ENSMUSG00000028373.16, intron 12 of 21) protein_coding-intron (ENSMUSG00000028373.16, intron 13 of 22) 49986 ENSMUSG00000051675.13 ENSMUSG00000051675 ENSMUST00000156922 Trim32 protein_coding Interval_56948 chr14 123952385 123952650 + 0 NA intron (ENSMUSG00000032925.16, intron 7 of 10) protein_coding-intron (ENSMUSG00000032925.16, intron 7 of 10) 18799 ENSMUSG00000077481.1 ENSMUSG00000077481 ENSMUST00000104293 Gm25272 snoRNA Interval_37261 chr12 63570279 63570751 + 0 NA Intergenic Intergenic -1348 ENSMUSG00000112972.1 ENSMUSG00000112972 ENSMUST00000220626 Gm48417 processed_pseudogene Interval_26965 chr11 61914788 61914992 + 0 NA intron (ENSMUSG00000047804.15, intron 4 of 9) protein_coding-intron (ENSMUSG00000047804.15, intron 2 of 8) 15317 ENSMUSG00000047804.15 ENSMUSG00000047804 ENSMUST00000143952 Akap10 protein_coding Interval_47349 chr13 81740498 81741118 + 0 NA intron (ENSMUSG00000051098.6, intron 1 of 1) protein_coding-intron (ENSMUSG00000051098.6, intron 1 of 1) -15780 ENSMUSG00000114905.1 ENSMUSG00000114905 ENSMUST00000224298 Gm48113 processed_pseudogene Interval_43329 chr13 29261972 29262612 + 0 NA intron (ENSMUSG00000006191.17, intron 15 of 16) protein_coding-intron (ENSMUSG00000006191.17, intron 15 of 16) -25672 ENSMUSG00000086423.1 ENSMUSG00000086423 ENSMUST00000137593 Gm11364 sense_intronic Interval_65644 chr16 24603459 24603748 + 0 NA intron (ENSMUSG00000033306.15, intron 4 of 6) protein_coding-intron (ENSMUSG00000033306.15, intron 4 of 12) 74209 ENSMUSG00000116875.1 ENSMUSG00000116875 ENSMUST00000231737 Morf4l1-ps1 processed_pseudogene Interval_113821 chr4 59096463 59096949 + 0 NA intron (ENSMUSG00000038598.9, intron 3 of 9) protein_coding-intron (ENSMUSG00000038598.9, intron 5 of 27) 6519 ENSMUSG00000081432.1 ENSMUSG00000081432 ENSMUST00000120981 Gm12593 processed_pseudogene Interval_157764 chr8 72852976 72853186 + 0 NA intron (ENSMUSG00000004383.18, intron 11 of 15) protein_coding-intron (ENSMUSG00000004383.18, intron 10 of 14) -57594 ENSMUSG00000110563.1 ENSMUSG00000110563 ENSMUST00000212908 Gm45791 processed_pseudogene Interval_18696 chr10 89400944 89401127 + 0 NA Intergenic Intergenic 32807 ENSMUSG00000074802.11 ENSMUSG00000074802 ENSMUST00000219073 Gas2l3 protein_coding Interval_114664 chr4 83585628 83585992 + 0 NA intron (ENSMUSG00000052407.17, intron 7 of 25) protein_coding-intron (ENSMUSG00000052407.17, intron 7 of 25) -11493 ENSMUSG00000098217.1 ENSMUSG00000098217 ENSMUST00000182160 Gm27046 processed_pseudogene Interval_124506 chr5 49712181 49713112 + 0 NA Intergenic Intergenic 160488 ENSMUSG00000083477.2 ENSMUSG00000083477 ENSMUST00000120352 Gm5555 processed_pseudogene Interval_95217 chr2 104855581 104856914 + 0 NA Intergenic Intergenic -6754 ENSMUSG00000027171.10 ENSMUSG00000027171 ENSMUST00000126824 Prrg4 protein_coding Interval_57775 chr15 19510369 19510823 + 0 NA Intergenic Intergenic -54244 ENSMUSG00000115516.1 ENSMUSG00000115516 ENSMUST00000226898 Gm8341 processed_pseudogene Interval_141514 chr6 128817669 128818540 + 0 NA TTS (ENSMUSG00000079298.9) protein_coding-TTS (ENSMUSG00000079298.9) 8115 ENSMUSG00000107872.2 ENSMUSG00000107872 ENSMUST00000204677 Gm44511 protein_coding Interval_163191 chr9 17659285 17660554 + 0 NA Intergenic Intergenic -59144 ENSMUSG00000111506.1 ENSMUSG00000111506 ENSMUST00000216550 Gm48848 processed_pseudogene Interval_73361 chr17 36719103 36719333 + 0 NA Intergenic Intergenic -4016 ENSMUSG00000092343.1 ENSMUSG00000092343 ENSMUST00000173464 Gm20525 unprocessed_pseudogene Interval_133786 chr6 12141098 12141855 + 0 NA Intergenic Intergenic 12850 ENSMUSG00000108209.1 ENSMUSG00000108209 ENSMUST00000203296 Gm32222 processed_pseudogene Interval_156915 chr8 61645483 61646023 + 0 NA intron (ENSMUSG00000058056.16, intron 10 of 21) protein_coding-intron (ENSMUSG00000058056.16, intron 10 of 19) -129853 ENSMUSG00000058056.16 ENSMUSG00000058056 ENSMUST00000123523 Palld protein_coding Interval_75731 chr17 70916354 70916790 + 0 NA intron (ENSMUSG00000097154.2, intron 1 of 2) lincRNA-intron (ENSMUSG00000097154.2, intron 1 of 2) 9960 ENSMUSG00000117156.1 ENSMUSG00000117156 ENSMUST00000233140 Gm49904 processed_pseudogene Interval_15232 chr10 43540261 43541141 + 0 NA exon (ENSMUSG00000019797.11, exon 1 of 1) protein_coding-exon (ENSMUSG00000019797.11, exon 1 of 1) 265 ENSMUSG00000019797.11 ENSMUSG00000019797 ENSMUST00000214198 Mtres1 protein_coding Interval_33516 chr11 116988174 116988504 + 0 NA Intergenic Intergenic 41004 ENSMUSG00000043857.16 ENSMUSG00000043857 ENSMUST00000126757 Mgat5b protein_coding Interval_26525 chr11 58380352 58381163 + 0 NA intron (ENSMUSG00000013643.13, intron 2 of 6) protein_coding-intron (ENSMUSG00000013643.13, intron 2 of 6) 1714 ENSMUSG00000013643.13 ENSMUSG00000013643 ENSMUST00000108826 Lypd8 protein_coding Interval_95581 chr2 112476555 112476869 + 0 NA Intergenic Intergenic 4057 ENSMUSG00000074939.3 ENSMUSG00000074939 ENSMUST00000099589 Chrm5 protein_coding Interval_126064 chr5 77183521 77184665 + 0 NA Intergenic Intergenic 27112 ENSMUSG00000053030.11 ENSMUSG00000053030 ENSMUST00000121825 Spink2 protein_coding Interval_127136 chr5 100517810 100519022 + 0 NA promoter-TSS (ENSMUSG00000035297.14) protein_coding-promoter-TSS (ENSMUSG00000035297.14) -41 ENSMUSG00000035297.14 ENSMUSG00000035297 ENSMUST00000123559 Cops4 protein_coding Interval_128691 chr5 114733340 114734216 + 0 NA TTS (ENSMUSG00000041890.17) protein_coding-TTS (ENSMUSG00000041890.17) 14094 ENSMUSG00000002486.15 ENSMUSG00000002486 ENSMUST00000202252 Tchp protein_coding Interval_29825 chr11 87086212 87087376 + 0 NA promoter-TSS (ENSMUSG00000020495.13) protein_coding-promoter-TSS (ENSMUSG00000020495.13) -1412 ENSMUSG00000020495.13 ENSMUSG00000020495 ENSMUST00000143280 Smg8 protein_coding Interval_135134 chr6 36377954 36378157 + 0 NA intron (ENSMUSG00000073154.10, intron 3 of 5) lincRNA-intron (ENSMUSG00000073154.10, intron 2 of 4) -10029 ENSMUSG00000045613.9 ENSMUSG00000045613 ENSMUST00000169004 Chrm2 protein_coding Interval_166724 chr9 62281509 62282691 + 0 NA exon (ENSMUSG00000046846.4, exon 1 of 2) protein_coding-exon (ENSMUSG00000046846.4, exon 1 of 2) 108 ENSMUSG00000046846.4 ENSMUSG00000046846 ENSMUST00000056949 Spesp1 protein_coding Interval_89300 chr2 19010159 19011529 + 0 NA Intergenic Intergenic 12501 ENSMUSG00000026736.2 ENSMUSG00000026736 ENSMUST00000238778 4930426L09Rik bidirectional_promoter_lncRNA Interval_72905 chr17 33134448 33134761 + 0 NA TTS (ENSMUSG00000048602.9) protein_coding-TTS (ENSMUSG00000048602.9) 5028 ENSMUSG00000048602.9 ENSMUSG00000048602 ENSMUST00000131954 Morc2b protein_coding Interval_49564 chr13 112987086 112988458 + 0 NA promoter-TSS (ENSMUSG00000042417.5) protein_coding-promoter-TSS (ENSMUSG00000042417.5) -32 ENSMUSG00000042417.5 ENSMUSG00000042417 ENSMUST00000224100 Ccno protein_coding Interval_105701 chr3 88643253 88644476 + 0 NA promoter-TSS (ENSMUSG00000028059.16) protein_coding-promoter-TSS (ENSMUSG00000028059.16) 9278 ENSMUSG00000049741.4 ENSMUSG00000049741 ENSMUST00000063119 Rxfp4 protein_coding Interval_167337 chr9 67549126 67550250 + 0 NA intron (ENSMUSG00000052698.15, intron 1 of 57) protein_coding-intron (ENSMUSG00000052698.15, intron 1 of 57) 125185 ENSMUSG00000111412.1 ENSMUSG00000111412 ENSMUST00000216972 Gm47047 antisense Interval_142879 chr6 146633645 146635250 + 0 NA promoter-TSS (ENSMUSG00000040234.16) protein_coding-promoter-TSS (ENSMUSG00000040234.16) -8144 ENSMUSG00000030291.12 ENSMUSG00000030291 ENSMUST00000075077 Med21 protein_coding Interval_9341 chr1 156450408 156451013 + 0 NA intron (ENSMUSG00000026600.12, intron 3 of 6) protein_coding-intron (ENSMUSG00000026600.12, intron 2 of 14) -4580 ENSMUSG00000103199.1 ENSMUSG00000103199 ENSMUST00000192072 Gm37648 TEC Interval_61091 chr15 79191664 79192524 + 0 NA intron (ENSMUSG00000075555.12, intron 1 of 2) processed_transcript-intron (ENSMUSG00000075555.12, intron 1 of 4) 19374 ENSMUSG00000075555.12 ENSMUSG00000075555 ENSMUST00000148028 Gm10863 processed_transcript Interval_28865 chr11 78851143 78852116 + 0 NA Intergenic Intergenic 25045 ENSMUSG00000072640.11 ENSMUSG00000072640 ENSMUST00000100748 Lyrm9 protein_coding Interval_21553 chr10 129822066 129822282 + 0 NA Intergenic Intergenic -17778 ENSMUSG00000063173.2 ENSMUSG00000063173 ENSMUST00000076437 Olfr811 protein_coding Interval_6449 chr1 109349423 109350278 + 0 NA Intergenic Intergenic 225279 ENSMUSG00000100884.1 ENSMUSG00000100884 ENSMUST00000185658 Gm28281 processed_pseudogene Interval_164781 chr9 41793315 41794576 + 0 NA Intergenic Intergenic -11467 ENSMUSG00000110981.1 ENSMUSG00000110981 ENSMUST00000213355 Gm35940 processed_transcript Interval_107094 chr3 103486369 103486581 + 0 NA Intergenic Intergenic -40675 ENSMUSG00000065029.1 ENSMUSG00000065029 ENSMUST00000083095 Gm25199 snRNA Interval_116550 chr4 115521546 115522544 + 0 NA intron (ENSMUSG00000066072.13, intron 4 of 12) protein_coding-intron (ENSMUSG00000066072.13, intron 4 of 12) 3757 ENSMUSG00000066072.13 ENSMUSG00000066072 ENSMUST00000094886 Cyp4a10 protein_coding Interval_152516 chr7 133748189 133748831 + 0 NA TTS (ENSMUSG00000030986.13) protein_coding-TTS (ENSMUSG00000030986.13) 886 ENSMUSG00000109635.1 ENSMUSG00000109635 ENSMUST00000211382 Gm45670 antisense Interval_32921 chr11 113125659 113126375 + 0 NA intron (ENSMUSG00000087259.7, intron 1 of 3) lincRNA-intron (ENSMUSG00000087259.7, intron 1 of 2) 47060 ENSMUSG00000087259.7 ENSMUSG00000087259 ENSMUST00000150712 2610035D17Rik lincRNA Interval_23331 chr11 21457043 21457262 + 0 NA Intergenic Intergenic -5798 ENSMUSG00000084412.1 ENSMUSG00000084412 ENSMUST00000120335 Gm12044 processed_pseudogene Interval_14609 chr10 36989628 36990152 + 0 NA intron (ENSMUSG00000019777.16, intron 5 of 7) protein_coding-intron (ENSMUSG00000019777.16, intron 5 of 13) -1876 ENSMUSG00000019777.16 ENSMUSG00000019777 ENSMUST00000123010 Hdac2 protein_coding Interval_124734 chr5 53607550 53607802 + 0 NA intron (ENSMUSG00000039191.12, intron 3 of 12) protein_coding-intron (ENSMUSG00000039191.12, intron 1 of 10) -30956 ENSMUSG00000039191.12 ENSMUSG00000039191 ENSMUST00000202092 Rbpj protein_coding Interval_169270 chr9 96014759 96015937 + 0 NA intron (ENSMUSG00000032410.13, intron 27 of 39) protein_coding-intron (ENSMUSG00000032410.13, intron 27 of 41) 4057 ENSMUSG00000101867.1 ENSMUSG00000101867 ENSMUST00000186632 C78334 antisense Interval_116002 chr4 106902404 106902616 + 0 NA Intergenic Intergenic -54590 ENSMUSG00000086940.1 ENSMUSG00000086940 ENSMUST00000151369 Gm12746 lincRNA Interval_83034 chr18 80628743 80630251 + 0 NA intron (ENSMUSG00000033016.16, intron 9 of 9) protein_coding-intron (ENSMUSG00000033016.16, intron 9 of 9) -20522 ENSMUSG00000033016.16 ENSMUSG00000033016 ENSMUST00000236711 Nfatc1 protein_coding Interval_133321 chr5 151697419 151698448 + 0 NA Intergenic Intergenic 2375 ENSMUSG00000095272.1 ENSMUSG00000095272 ENSMUST00000179440 Gm24242 snRNA Interval_72917 chr17 33439009 33440110 + 0 NA Intergenic Intergenic 6663 ENSMUSG00000092519.2 ENSMUSG00000092519 ENSMUST00000174088 Actl9 protein_coding Interval_149202 chr7 96244505 96245302 + 0 NA intron (ENSMUSG00000048078.16, intron 1 of 32) protein_coding-intron (ENSMUSG00000048078.16, intron 1 of 32) -4521 ENSMUSG00000076143.1 ENSMUSG00000076143 ENSMUST00000102189 Mir708 miRNA Interval_20226 chr10 116279085 116279342 + 0 NA intron (ENSMUSG00000020154.10, intron 2 of 33) protein_coding-intron (ENSMUSG00000020154.10, intron 2 of 7) 3690 ENSMUSG00000020154.10 ENSMUSG00000020154 ENSMUST00000092167 Ptprb protein_coding Interval_52385 chr14 45506821 45507703 + 0 NA intron (ENSMUSG00000037712.16, intron 2 of 5) protein_coding-intron (ENSMUSG00000037712.16, intron 2 of 14) -15177 ENSMUSG00000115275.1 ENSMUSG00000115275 ENSMUST00000228572 9630050E16Rik TEC Interval_98864 chr2 155630661 155631277 + 0 NA TTS (ENSMUSG00000074652.3) protein_coding-TTS (ENSMUSG00000074652.3) -2482 ENSMUSG00000074652.3 ENSMUSG00000074652 ENSMUST00000154656 Myh7b protein_coding Interval_91930 chr2 51667138 51668151 + 0 NA intron (ENSMUSG00000085014.1, intron 4 of 6) lincRNA-intron (ENSMUSG00000085014.1, intron 4 of 6) 40133 ENSMUSG00000056115.2 ENSMUSG00000056115 ENSMUST00000070028 Tas2r134 protein_coding Interval_11006 chr1 178143182 178144059 + 0 NA exon (ENSMUSG00000102493.1, exon 1 of 2) unprocessed_pseudogene-exon (ENSMUSG00000102493.1, exon 1 of 2) 319 ENSMUSG00000102493.1 ENSMUSG00000102493 ENSMUST00000194128 Gm8010 unprocessed_pseudogene Interval_113680 chr4 57523082 57523778 + 0 NA intron (ENSMUSG00000090053.9, intron 1 of 6) protein_coding-intron (ENSMUSG00000090053.9, intron 1 of 6) -44890 ENSMUSG00000090053.9 ENSMUSG00000090053 ENSMUST00000131201 Pakap protein_coding Interval_107727 chr3 112123828 112124591 + 0 NA Intergenic Intergenic 74832 ENSMUSG00000089017.1 ENSMUSG00000089017 ENSMUST00000158392 Gm25519 snoRNA Interval_110604 chr4 4564582 4564906 + 0 NA Intergenic Intergenic -36025 ENSMUSG00000085155.3 ENSMUSG00000085155 ENSMUST00000136880 Gm11780 processed_pseudogene Interval_128422 chr5 113252859 113253333 + 0 NA intron (ENSMUSG00000042216.13, intron 13 of 15) protein_coding-intron (ENSMUSG00000042216.13, intron 22 of 24) 26187 ENSMUSG00000066964.2 ENSMUSG00000066964 ENSMUST00000086615 Tmem211 protein_coding Interval_129257 chr5 118481023 118481590 + 0 NA Intergenic Intergenic -5661 ENSMUSG00000082365.2 ENSMUSG00000082365 ENSMUST00000119191 Gm15754 transcribed_processed_pseudogene Interval_133868 chr6 13835798 13836852 + 0 NA exon (ENSMUSG00000048216.13, exon 4 of 4) protein_coding-exon (ENSMUSG00000048216.13, exon 4 of 4) 3170 ENSMUSG00000048216.13 ENSMUSG00000048216 ENSMUST00000127072 Gpr85 protein_coding Interval_99290 chr2 158708030 158708849 + 0 NA intron (ENSMUSG00000037754.13, intron 1 of 8) protein_coding-intron (ENSMUSG00000037754.13, intron 2 of 10) 12304 ENSMUSG00000037754.13 ENSMUSG00000037754 ENSMUST00000145073 Ppp1r16b protein_coding Interval_104658 chr3 69185397 69185852 + 0 NA Intergenic Intergenic -36795 ENSMUSG00000098207.1 ENSMUSG00000098207 ENSMUST00000183126 Arl14 protein_coding Interval_160820 chr8 112797585 112798360 + 0 NA intron (ENSMUSG00000031772.17, intron 12 of 20) protein_coding-intron (ENSMUSG00000031772.17, intron 12 of 23) 24318 ENSMUSG00000031772.17 ENSMUSG00000031772 ENSMUST00000140753 Cntnap4 protein_coding Interval_24769 chr11 37075300 37075561 + 0 NA intron (ENSMUSG00000049336.16, intron 2 of 3) protein_coding-intron (ENSMUSG00000049336.16, intron 2 of 30) -131264 ENSMUSG00000049336.16 ENSMUSG00000049336 ENSMUST00000157030 Tenm2 protein_coding Interval_239 KZ289068.1 269510 271871 + 0 NA NA NA NA NA Interval_40183 chr12 102389862 102390406 + 0 NA exon (ENSMUSG00000044456.16, exon 10 of 10) protein_coding-exon (ENSMUSG00000044456.16, exon 10 of 10) 16012 ENSMUSG00000021190.14 ENSMUSG00000021190 ENSMUST00000146499 Lgmn protein_coding Interval_13575 chr10 19891772 19892234 + 0 NA intron (ENSMUSG00000020003.16, intron 4 of 8) protein_coding-intron (ENSMUSG00000020003.16, intron 5 of 9) 15648 ENSMUSG00000020003.16 ENSMUSG00000020003 ENSMUST00000214951 Pex7 protein_coding Interval_168338 chr9 78865131 78865492 + 0 NA Intergenic Intergenic -43473 ENSMUSG00000059422.5 ENSMUSG00000059422 ENSMUST00000182917 Gm8116 processed_pseudogene Interval_141025 chr6 124452144 124454093 + 0 NA intron (ENSMUSG00000008153.12, intron 8 of 17) protein_coding-intron (ENSMUSG00000008153.12, intron 8 of 17) -13647 ENSMUSG00000118414.1 ENSMUSG00000118414 ENSMUST00000238756 Gm50463 unitary_pseudogene Interval_33110 chr11 114501762 114502936 + 0 NA Intergenic Intergenic -53489 ENSMUSG00000062391.3 ENSMUSG00000062391 ENSMUST00000141088 4932435O22Rik lincRNA Interval_155007 chr8 25636406 25637808 + 0 NA intron (ENSMUSG00000054823.16, intron 1 of 9) protein_coding-intron (ENSMUSG00000054823.16, intron 1 of 7) 5157 ENSMUSG00000088037.1 ENSMUSG00000088037 ENSMUST00000157412 Gm24992 snoRNA Interval_88640 chr2 8189926 8191003 + 0 NA Intergenic Intergenic -42599 ENSMUSG00000083269.1 ENSMUSG00000083269 ENSMUST00000118295 Gm13254 processed_pseudogene Interval_127424 chr5 103836064 103836628 + 0 NA intron (ENSMUSG00000029313.18, intron 11 of 12) protein_coding-intron (ENSMUSG00000029313.18, intron 11 of 19) 38023 ENSMUSG00000029312.12 ENSMUSG00000029312 ENSMUST00000147184 Klhl8 protein_coding Interval_709 chr1 10054155 10054389 + 0 NA intron (ENSMUSG00000056763.16, intron 3 of 3) protein_coding-intron (ENSMUSG00000056763.16, intron 3 of 29) 3672 ENSMUSG00000102356.1 ENSMUSG00000102356 ENSMUST00000194474 1700047N06Rik TEC Interval_65939 chr16 30387759 30390343 + 0 NA promoter-TSS (ENSMUSG00000022533.14) protein_coding-promoter-TSS (ENSMUSG00000022533.14) -55203 ENSMUSG00000022533.14 ENSMUSG00000022533 ENSMUST00000136065 Atp13a3 protein_coding Interval_66002 chr16 30854515 30855180 + 0 NA Intergenic Intergenic 5391 ENSMUSG00000116546.1 ENSMUSG00000116546 ENSMUST00000232290 Gm49755 lincRNA Interval_70748 chr17 14155009 14155233 + 0 NA Intergenic Intergenic -28824 ENSMUSG00000117280.1 ENSMUSG00000117280 ENSMUST00000233203 Gm49903 unprocessed_pseudogene Interval_28888 chr11 79083000 79083524 + 0 NA intron (ENSMUSG00000018334.18, intron 1 of 12) protein_coding-intron (ENSMUSG00000018334.18, intron 1 of 18) -23426 ENSMUSG00000018334.18 ENSMUSG00000018334 ENSMUST00000129463 Ksr1 protein_coding Interval_167667 chr9 71724666 71725598 + 0 NA exon (ENSMUSG00000032232.14, exon 2 of 19) protein_coding-exon (ENSMUSG00000032232.14, exon 2 of 19) -94023 ENSMUSG00000032232.14 ENSMUSG00000032232 ENSMUST00000146567 Cgnl1 protein_coding Interval_136055 chr6 50354550 50355604 + 0 NA intron (ENSMUSG00000029822.15, intron 2 of 5) protein_coding-intron (ENSMUSG00000029822.15, intron 3 of 21) -3120 ENSMUSG00000029822.15 ENSMUSG00000029822 ENSMUST00000154333 Osbpl3 protein_coding Interval_68519 chr16 78341204 78341693 + 0 NA TTS (ENSMUSG00000022865.14) protein_coding-TTS (ENSMUSG00000022865.14) 2020 ENSMUSG00000116707.1 ENSMUSG00000116707 ENSMUST00000232286 Gm49590 TEC Interval_73974 chr17 45781551 45782113 + 0 NA TTS (ENSMUSG00000097727.8) lincRNA-TTS (ENSMUSG00000097727.8) 14637 ENSMUSG00000097727.8 ENSMUSG00000097727 ENSMUST00000233473 F630040K05Rik lincRNA Interval_11048 chr1 178895788 178896610 + 0 NA intron (ENSMUSG00000026494.12, intron 10 of 14) protein_coding-intron (ENSMUSG00000026494.12, intron 7 of 11) 21415 ENSMUSG00000089713.1 ENSMUSG00000089713 ENSMUST00000162545 Gm16564 antisense Interval_16454 chr10 62971922 62973206 + 0 NA intron (ENSMUSG00000036875.15, intron 5 of 5) protein_coding-intron (ENSMUSG00000036875.15, intron 20 of 20) 6883 ENSMUSG00000036875.15 ENSMUSG00000036875 ENSMUST00000137378 Dna2 protein_coding Interval_94473 chr2 91476443 91477518 + 0 NA intron (ENSMUSG00000027253.15, intron 2 of 4) protein_coding-intron (ENSMUSG00000027253.15, intron 10 of 37) 661 ENSMUSG00000027253.15 ENSMUSG00000027253 ENSMUST00000151907 Lrp4 protein_coding Interval_84547 chr19 12595497 12596829 + 0 NA exon (ENSMUSG00000086213.2, exon 1 of 2) processed_transcript-exon (ENSMUSG00000086213.2, exon 1 of 2) 356 ENSMUSG00000086213.2 ENSMUSG00000086213 ENSMUST00000136697 A330040F15Rik processed_transcript Interval_19071 chr10 94225435 94225804 + 0 NA Intergenic Intergenic 26615 ENSMUSG00000020022.17 ENSMUSG00000020022 ENSMUST00000125379 Ndufa12 protein_coding Interval_82936 chr18 79687430 79687765 + 0 NA Intergenic Intergenic 13660 ENSMUSG00000117709.1 ENSMUSG00000117709 ENSMUST00000237884 Gm50178 processed_pseudogene Interval_129120 chr5 117511009 117511335 + 0 NA intron (ENSMUSG00000061578.8, intron 3 of 20) protein_coding-intron (ENSMUSG00000061578.8, intron 3 of 3) -9527 ENSMUSG00000107199.1 ENSMUSG00000107199 ENSMUST00000201553 Gm42550 TEC Interval_115872 chr4 105390348 105390699 + 0 NA Intergenic Intergenic -15577 ENSMUSG00000081819.1 ENSMUSG00000081819 ENSMUST00000118507 Gm12722 processed_pseudogene Interval_115407 chr4 98717928 98718916 + 0 NA TTS (ENSMUSG00000061859.17) protein_coding-TTS (ENSMUSG00000061859.17) -14781 ENSMUSG00000087166.9 ENSMUSG00000087166 ENSMUST00000173659 L1td1 protein_coding Interval_85663 chr19 29471859 29472610 + 0 NA intron (ENSMUSG00000097855.8, intron 3 of 5) antisense-intron (ENSMUSG00000097855.8, intron 3 of 5) 48736 ENSMUSG00000097855.8 ENSMUSG00000097855 ENSMUST00000180737 A930007I19Rik antisense Interval_64793 chr16 15843107 15844421 + 0 NA Intergenic Intergenic 19546 ENSMUSG00000022671.13 ENSMUSG00000022671 ENSMUST00000117136 Mzt2 protein_coding Interval_73442 chr17 37300046 37300304 + 0 NA exon (ENSMUSG00000092077.2, exon 1 of 1) protein_coding-exon (ENSMUSG00000092077.2, exon 1 of 1) 2457 ENSMUSG00000092077.2 ENSMUSG00000092077 ENSMUST00000058046 Olfr101 protein_coding Interval_138820 chr6 92189707 92190441 + 0 NA TTS (ENSMUSG00000014550.14) protein_coding-TTS (ENSMUSG00000014550.14) 4054 ENSMUSG00000014550.14 ENSMUSG00000014550 ENSMUST00000138041 Rbsn protein_coding Interval_37699 chr12 71201400 71203188 + 0 NA intron (ENSMUSG00000034601.17, intron 27 of 27) protein_coding-intron (ENSMUSG00000034601.17, intron 27 of 27) 3150 ENSMUSG00000113878.1 ENSMUSG00000113878 ENSMUST00000222488 Gm19045 processed_pseudogene Interval_3741 chr1 62702817 62703784 + 0 NA promoter-TSS (ENSMUSG00000025969.15) protein_coding-promoter-TSS (ENSMUSG00000025969.15) 15 ENSMUSG00000025969.15 ENSMUSG00000025969 ENSMUST00000114157 Nrp2 protein_coding Interval_60540 chr15 74733093 74734624 + 0 NA intron (ENSMUSG00000022595.7, intron 1 of 1) protein_coding-intron (ENSMUSG00000022595.7, intron 1 of 2) 459 ENSMUSG00000022595.7 ENSMUSG00000022595 ENSMUST00000188716 Lypd2 protein_coding Interval_27158 chr11 63505720 63505934 + 0 NA Intergenic Intergenic 92658 ENSMUSG00000085113.1 ENSMUSG00000085113 ENSMUST00000151765 B130011K05Rik lincRNA Interval_28052 chr11 72503688 72504232 + 0 NA intron (ENSMUSG00000020798.14, intron 9 of 11) protein_coding-intron (ENSMUSG00000020798.14, intron 8 of 10) -1517 ENSMUSG00000020798.14 ENSMUSG00000020798 ENSMUST00000021154 Spns3 protein_coding Interval_166338 chr9 58436013 58437160 + 0 NA Intergenic Intergenic -18536 ENSMUSG00000097651.2 ENSMUSG00000097651 ENSMUST00000181967 4930461G14Rik lincRNA Interval_10025 chr1 165171618 165171917 + 0 NA Intergenic Intergenic -22073 ENSMUSG00000026572.11 ENSMUSG00000026572 ENSMUST00000160350 Tbx19 protein_coding Interval_106530 chr3 97024346 97024588 + 0 NA intron (ENSMUSG00000057123.14, intron 2 of 3) protein_coding-intron (ENSMUSG00000057123.14, intron 2 of 3) -23696 ENSMUSG00000105385.1 ENSMUSG00000105385 ENSMUST00000200375 9230114J08Rik antisense Interval_100433 chr2 168987227 168988503 + 0 NA promoter-TSS (ENSMUSG00000086658.1) lincRNA-promoter-TSS (ENSMUSG00000086658.1) -492 ENSMUSG00000086658.1 ENSMUSG00000086658 ENSMUST00000125121 Gm14260 lincRNA Interval_10518 chr1 171437133 171438672 + 0 NA intron (ENSMUSG00000038235.4, intron 1 of 2) protein_coding-intron (ENSMUSG00000038235.4, intron 1 of 9) 18183 ENSMUSG00000103711.1 ENSMUSG00000103711 ENSMUST00000194029 Tstd1 protein_coding Interval_119881 chr4 140663167 140664160 + 0 NA intron (ENSMUSG00000040964.16, intron 1 of 27) protein_coding-intron (ENSMUSG00000040964.16, intron 1 of 27) -16090 ENSMUSG00000086159.1 ENSMUSG00000086159 ENSMUST00000141469 Gm13025 lincRNA Interval_876 chr1 12875468 12876370 + 0 NA intron (ENSMUSG00000025938.16, intron 7 of 7) protein_coding-intron (ENSMUSG00000025938.16, intron 7 of 7) 115258 ENSMUSG00000025938.16 ENSMUSG00000025938 ENSMUST00000191566 Slco5a1 protein_coding Interval_60479 chr15 74180055 74180316 + 0 NA Intergenic Intergenic -85852 ENSMUSG00000082585.3 ENSMUSG00000082585 ENSMUST00000120421 Gm15387 processed_pseudogene Interval_120472 chr4 148841781 148842805 + 0 NA intron (ENSMUSG00000028977.17, intron 2 of 20) protein_coding-intron (ENSMUSG00000028977.17, intron 2 of 15) 72031 ENSMUSG00000086766.1 ENSMUSG00000086766 ENSMUST00000151967 Gm15969 antisense Interval_93301 chr2 71786279 71788443 + 0 NA intron (ENSMUSG00000027111.16, intron 1 of 25) protein_coding-intron (ENSMUSG00000027111.16, intron 1 of 25) 222 ENSMUSG00000027111.16 ENSMUSG00000027111 ENSMUST00000139760 Itga6 protein_coding Interval_48218 chr13 97239660 97241780 + 0 NA promoter-TSS (ENSMUSG00000041773.8) protein_coding-promoter-TSS (ENSMUSG00000041773.8) -385 ENSMUSG00000041773.8 ENSMUSG00000041773 ENSMUST00000041623 Enc1 protein_coding Interval_87643 chr19 53953525 53954061 + 0 NA intron (ENSMUSG00000024976.14, intron 2 of 2) protein_coding-intron (ENSMUSG00000024976.14, intron 1 of 8) 8976 ENSMUSG00000117704.1 ENSMUSG00000117704 ENSMUST00000235879 Gm50273 TEC Interval_40899 chr12 109325967 109326285 + 0 NA Intergenic Intergenic -5090 ENSMUSG00000093231.1 ENSMUSG00000093231 ENSMUST00000175490 Gm25297 miRNA Interval_63405 chr15 100844677 100845795 + 0 NA Intergenic Intergenic -12845 ENSMUSG00000115912.1 ENSMUSG00000115912 ENSMUST00000230694 Gm35569 lincRNA Interval_50718 chr14 18521217 18521731 + 0 NA Intergenic Intergenic -9889 ENSMUSG00000035129.6 ENSMUSG00000035129 ENSMUST00000038304 Gm6781 processed_pseudogene Interval_170333 chr9 107231211 107232746 + 0 NA promoter-TSS (ENSMUSG00000039716.12) protein_coding-promoter-TSS (ENSMUSG00000039716.12) -270 ENSMUSG00000092963.1 ENSMUSG00000092963 ENSMUST00000175222 Gm22238 miRNA Interval_150341 chr7 109722785 109723424 + 0 NA intron (ENSMUSG00000031022.15, intron 2 of 5) protein_coding-intron (ENSMUSG00000031022.15, intron 2 of 5) -2088 ENSMUSG00000031022.15 ENSMUSG00000031022 ENSMUST00000145211 BC051019 protein_coding Interval_156313 chr8 47323620 47325080 + 0 NA intron (ENSMUSG00000038143.16, intron 7 of 7) protein_coding-intron (ENSMUSG00000038143.16, intron 1 of 4) 89487 ENSMUSG00000038143.16 ENSMUSG00000038143 ENSMUST00000181417 Stox2 protein_coding Interval_155477 chr8 33828113 33830338 + 0 NA intron (ENSMUSG00000097442.1, intron 1 of 1) protein_coding-intron (ENSMUSG00000031586.17, intron 5 of 7) 16022 ENSMUSG00000097442.1 ENSMUSG00000097442 ENSMUST00000181120 Gm26632 antisense Interval_92310 chr2 58585889 58586797 + 0 NA intron (ENSMUSG00000026839.17, intron 1 of 3) protein_coding-intron (ENSMUSG00000026839.17, intron 1 of 7) -46738 ENSMUSG00000026839.17 ENSMUSG00000026839 ENSMUST00000128864 Upp2 protein_coding Interval_72444 chr17 29848945 29849783 + 0 NA TTS (ENSMUSG00000043557.16) protein_coding-TTS (ENSMUSG00000043557.16) -9383 ENSMUSG00000043557.16 ENSMUSG00000043557 ENSMUST00000167102 Mdga1 protein_coding Interval_154509 chr8 18779436 18780362 + 0 NA intron (ENSMUSG00000039842.15, intron 12 of 13) protein_coding-intron (ENSMUSG00000039842.15, intron 12 of 13) -66378 ENSMUSG00000031467.10 ENSMUSG00000031467 ENSMUST00000033847 Agpat5 protein_coding Interval_111513 chr4 22317431 22318878 + 0 NA Intergenic Intergenic -39406 ENSMUSG00000040410.14 ENSMUSG00000040410 ENSMUST00000184582 Fbxl4 protein_coding Interval_99812 chr2 165069864 165070850 + 0 NA intron (ENSMUSG00000017652.16, intron 7 of 7) protein_coding-intron (ENSMUSG00000017652.16, intron 8 of 8) 14653 ENSMUSG00000017652.16 ENSMUSG00000017652 ENSMUST00000153105 Cd40 protein_coding Interval_78293 chr18 11768506 11769301 + 0 NA Intergenic Intergenic -16348 ENSMUSG00000117589.1 ENSMUSG00000117589 ENSMUST00000234203 Gm18713 processed_pseudogene Interval_3197 chr1 54665865 54666203 + 0 NA intron (ENSMUSG00000052331.14, intron 18 of 27) protein_coding-intron (ENSMUSG00000052331.14, intron 18 of 27) -15695 ENSMUSG00000101674.6 ENSMUSG00000101674 ENSMUST00000188243 4930444A19Rik antisense Interval_26080 chr11 54002262 54003436 + 0 NA intron (ENSMUSG00000020334.6, intron 2 of 4) protein_coding-intron (ENSMUSG00000020334.6, intron 3 of 9) 25103 ENSMUSG00000020334.6 ENSMUSG00000020334 ENSMUST00000154369 Slc22a4 protein_coding Interval_19949 chr10 111464124 111464542 + 0 NA Intergenic Intergenic -8894 ENSMUSG00000058799.16 ENSMUSG00000058799 ENSMUST00000219718 Nap1l1 protein_coding Interval_82921 chr18 79122336 79123227 + 0 NA Intergenic Intergenic -13390 ENSMUSG00000024548.11 ENSMUSG00000024548 ENSMUST00000025430 Setbp1 protein_coding Interval_19923 chr10 111223309 111223711 + 0 NA intron (ENSMUSG00000020189.15, intron 2 of 22) protein_coding-intron (ENSMUSG00000020189.15, intron 2 of 22) -24558 ENSMUSG00000020189.15 ENSMUSG00000020189 ENSMUST00000238838 Osbpl8 protein_coding Interval_26912 chr11 61518950 61519641 + 0 NA exon (ENSMUSG00000001036.17, exon 10 of 10) protein_coding-exon (ENSMUSG00000001036.17, exon 10 of 10) -8460 ENSMUSG00000085459.1 ENSMUSG00000085459 ENSMUST00000138136 Gm12272 antisense Interval_93191 chr2 71037678 71037937 + 0 NA intron (ENSMUSG00000041975.17, intron 1 of 10) protein_coding-intron (ENSMUSG00000041975.17, intron 1 of 5) -17937 ENSMUSG00000041966.18 ENSMUSG00000041966 ENSMUST00000132619 Dcaf17 protein_coding Interval_93829 chr2 77279950 77281266 + 0 NA promoter-TSS (ENSMUSG00000042272.17) protein_coding-promoter-TSS (ENSMUSG00000042272.17) -10723 ENSMUSG00000081611.1 ENSMUSG00000081611 ENSMUST00000119086 Gm13651 processed_pseudogene Interval_52874 chr14 51429867 51430548 + 0 NA intron (ENSMUSG00000115374.1, intron 1 of 1) processed_transcript-intron (ENSMUSG00000089761.3, intron 1 of 1) 1444 ENSMUSG00000115374.1 ENSMUSG00000115374 ENSMUST00000161721 Vmn2r-ps111 transcribed_unprocessed_pseudogene Interval_93712 chr2 76049740 76050560 + 0 NA exon (ENSMUSG00000075270.11, exon 14 of 20) protein_coding-exon (ENSMUSG00000075270.11, exon 14 of 20) -68183 ENSMUSG00000075271.4 ENSMUSG00000075271 ENSMUST00000099994 Ttc30a1 protein_coding Interval_4699 chr1 77436348 77436818 + 0 NA intron (ENSMUSG00000026235.14, intron 1 of 2) protein_coding-intron (ENSMUSG00000026235.14, intron 4 of 17) 60185 ENSMUSG00000099141.1 ENSMUSG00000099141 ENSMUST00000184495 Mir6352 miRNA Interval_12220 chr1 190922278 190922561 + 0 NA Intergenic Intergenic -14833 ENSMUSG00000026634.16 ENSMUSG00000026634 ENSMUST00000146048 Angel2 protein_coding Interval_129081 chr5 117307350 117308233 + 0 NA Intergenic Intergenic 7854 ENSMUSG00000097163.2 ENSMUSG00000097163 ENSMUST00000181440 BC051077 lincRNA Interval_39336 chr12 86798878 86799259 + 0 NA Intergenic Intergenic -10889 ENSMUSG00000088403.1 ENSMUSG00000088403 ENSMUST00000157778 Gm25888 misc_RNA Interval_114737 chr4 84633255 84634049 + 0 NA intron (ENSMUSG00000028487.18, intron 1 of 5) protein_coding-intron (ENSMUSG00000028487.18, intron 1 of 7) -64211 ENSMUSG00000081775.1 ENSMUSG00000081775 ENSMUST00000119869 Gm12420 processed_pseudogene Interval_125674 chr5 73188540 73190373 + 0 NA exon (ENSMUSG00000107109.1, exon 1 of 1) TEC-exon (ENSMUSG00000107109.1, exon 1 of 1) 961 ENSMUSG00000107109.1 ENSMUSG00000107109 ENSMUST00000201197 Gm42571 TEC Interval_55943 chr14 103051058 103051914 + 0 NA exon (ENSMUSG00000022126.6, exon 4 of 5) protein_coding-exon (ENSMUSG00000022126.6, exon 4 of 5) 4509 ENSMUSG00000022126.6 ENSMUSG00000022126 ENSMUST00000022722 Acod1 protein_coding Interval_124904 chr5 59947743 59951052 + 0 NA Intergenic Intergenic 6743 ENSMUSG00000104563.1 ENSMUSG00000104563 ENSMUST00000200022 Gm43041 TEC Interval_38156 chr12 76015141 76016958 + 0 NA intron (ENSMUSG00000063450.14, intron 66 of 114) protein_coding-intron (ENSMUSG00000063450.14, intron 66 of 115) 106946 ENSMUSG00000092922.1 ENSMUSG00000092922 ENSMUST00000175181 Mir5101 miRNA Interval_158349 chr8 82348429 82348716 + 0 NA intron (ENSMUSG00000031712.10, intron 1 of 1) protein_coding-intron (ENSMUSG00000031712.10, intron 2 of 7) -4099 ENSMUSG00000031712.10 ENSMUSG00000031712 ENSMUST00000210472 Il15 protein_coding Interval_4045 chr1 66809021 66809810 + 0 NA promoter-TSS (ENSMUSG00000026004.15) protein_coding-promoter-TSS (ENSMUSG00000026004.15) -2900 ENSMUSG00000103382.1 ENSMUSG00000103382 ENSMUST00000195880 Gm37755 TEC Interval_90244 chr2 29261285 29262532 + 0 NA Intergenic Intergenic -8915 ENSMUSG00000079499.9 ENSMUSG00000079499 ENSMUST00000028141 6530402F18Rik processed_transcript Interval_82419 chr18 73869182 73869408 + 0 NA intron (ENSMUSG00000064036.15, intron 1 of 1) protein_coding-intron (ENSMUSG00000064036.15, intron 2 of 7) 9908 ENSMUSG00000064036.15 ENSMUSG00000064036 ENSMUST00000134847 Mro protein_coding Interval_135260 chr6 37903532 37904258 + 0 NA intron (ENSMUSG00000029833.17, intron 2 of 3) protein_coding-intron (ENSMUSG00000029833.17, intron 2 of 18) 33084 ENSMUSG00000029833.17 ENSMUSG00000029833 ENSMUST00000135387 Trim24 protein_coding Interval_145257 chr7 31005795 31006002 + 0 NA Intergenic Intergenic 32040 ENSMUSG00000009687.14 ENSMUSG00000009687 ENSMUST00000161259 Fxyd5 protein_coding Interval_64464 chr16 11635972 11636172 + 0 NA intron (ENSMUSG00000071669.14, intron 16 of 20) protein_coding-intron (ENSMUSG00000071669.14, intron 9 of 13) 55785 ENSMUSG00000085732.1 ENSMUSG00000085732 ENSMUST00000154314 Gm4279 antisense Interval_79380 chr18 31452526 31452760 + 0 NA Intergenic Intergenic -5237 ENSMUSG00000024261.6 ENSMUSG00000024261 ENSMUST00000025110 Syt4 protein_coding Interval_169379 chr9 96800117 96801239 + 0 NA Intergenic Intergenic -9078 ENSMUSG00000100383.1 ENSMUSG00000100383 ENSMUST00000187301 Gm28688 processed_pseudogene Interval_157569 chr8 71475484 71477792 + 0 NA TTS (ENSMUSG00000074247.10) protein_coding-TTS (ENSMUSG00000074247.10) 7353 ENSMUSG00000074247.10 ENSMUSG00000074247 ENSMUST00000146677 Dda1 protein_coding Interval_46288 chr13 63410545 63411491 + 0 NA TTS (ENSMUSG00000113126.1) TEC-TTS (ENSMUSG00000113126.1) 3749 ENSMUSG00000113126.1 ENSMUSG00000113126 ENSMUST00000220476 Gm47588 TEC Interval_125937 chr5 75977084 75979133 + 0 NA exon (ENSMUSG00000062960.10, exon 1 of 30) protein_coding-exon (ENSMUSG00000062960.10, exon 1 of 30) 350 ENSMUSG00000062960.10 ENSMUSG00000062960 ENSMUST00000149573 Kdr protein_coding Interval_73680 chr17 42748250 42748646 + 0 NA Intergenic Intergenic -6269 ENSMUSG00000057899.7 ENSMUSG00000057899 ENSMUST00000113614 Adgrf2 protein_coding Interval_87484 chr19 52921810 52924430 + 0 NA promoter-TSS (ENSMUSG00000117896.1) lincRNA-promoter-TSS (ENSMUSG00000117896.1) -122 ENSMUSG00000117896.1 ENSMUSG00000117896 ENSMUST00000237126 AA387883 lincRNA Interval_62634 chr15 95837283 95837874 + 0 NA intron (ENSMUSG00000064210.7, intron 2 of 20) protein_coding-intron (ENSMUSG00000064210.7, intron 1 of 19) -7506 ENSMUSG00000078648.3 ENSMUSG00000078648 ENSMUST00000168960 Gm17546 antisense Interval_83653 chr19 3496950 3497655 + 0 NA promoter-TSS (ENSMUSG00000024908.15) protein_coding-promoter-TSS (ENSMUSG00000024908.15) 6993 ENSMUSG00000075908.1 ENSMUSG00000075908 ENSMUST00000101958 Gm23940 snRNA Interval_89288 chr2 18869124 18869375 + 0 NA intron (ENSMUSG00000026737.12, intron 5 of 9) protein_coding-intron (ENSMUSG00000026737.12, intron 5 of 9) 37025 ENSMUSG00000026737.12 ENSMUSG00000026737 ENSMUST00000152981 Pip4k2a protein_coding Interval_145491 chr7 35171546 35172344 + 0 NA Intergenic Intergenic -14537 ENSMUSG00000030495.12 ENSMUSG00000030495 ENSMUST00000146959 Slc7a10 protein_coding Interval_4935 chr1 82801787 82802060 + 0 NA Intergenic Intergenic 5545 ENSMUSG00000102280.1 ENSMUSG00000102280 ENSMUST00000192756 Gm36999 TEC Interval_90159 chr2 28624520 28626220 + 0 NA Intergenic Intergenic -3388 ENSMUSG00000026815.14 ENSMUSG00000026815 ENSMUST00000145690 Gfi1b protein_coding Interval_76459 chr17 80343193 80343856 + 0 NA intron (ENSMUSG00000054901.7, intron 4 of 6) protein_coding-intron (ENSMUSG00000054901.7, intron 3 of 17) 30017 ENSMUSG00000066938.1 ENSMUSG00000066938 ENSMUST00000086549 Gm10190 protein_coding Interval_34779 chr12 11061994 11062647 + 0 NA intron (ENSMUSG00000113620.1, intron 2 of 2) lincRNA-intron (ENSMUSG00000113620.1, intron 2 of 2) 14507 ENSMUSG00000113620.1 ENSMUSG00000113620 ENSMUST00000222157 7420701I03Rik lincRNA Interval_31003 chr11 97661621 97665435 + 0 NA promoter-TSS (ENSMUSG00000038437.11) protein_coding-promoter-TSS (ENSMUSG00000038437.11) -44 ENSMUSG00000038437.11 ENSMUSG00000038437 ENSMUST00000143220 Mllt6 protein_coding Interval_149859 chr7 102044697 102045052 + 0 NA intron (ENSMUSG00000070426.12, intron 1 of 8) protein_coding-intron (ENSMUSG00000070426.12, intron 1 of 8) 20284 ENSMUSG00000070426.12 ENSMUSG00000070426 ENSMUST00000130074 Rnf121 protein_coding Interval_173352 chrX 82934654 82935410 + 0 NA Intergenic Intergenic -37533 ENSMUSG00000088097.1 ENSMUSG00000088097 ENSMUST00000157472 Gm23671 misc_RNA Interval_69504 chr16 93923206 93924136 + 0 NA intron (ENSMUSG00000047109.13, intron 2 of 2) protein_coding-intron (ENSMUSG00000047109.13, intron 2 of 2) 18713 ENSMUSG00000047109.13 ENSMUSG00000047109 ENSMUST00000232406 Cldn14 protein_coding Interval_14065 chr10 26418953 26419588 + 0 NA Intergenic Intergenic -35176 ENSMUSG00000112045.1 ENSMUSG00000112045 ENSMUST00000217918 Gm5649 processed_pseudogene Interval_24001 chr11 29331967 29332983 + 0 NA TTS (ENSMUSG00000083298.1) processed_pseudogene-TTS (ENSMUSG00000083298.1) 1847 ENSMUSG00000083298.1 ENSMUSG00000083298 ENSMUST00000119263 Gm12085 processed_pseudogene Interval_78496 chr18 13706114 13706542 + 0 NA intron (ENSMUSG00000024420.9, intron 4 of 5) protein_coding-intron (ENSMUSG00000024420.9, intron 7 of 7) -104928 ENSMUSG00000117608.1 ENSMUSG00000117608 ENSMUST00000234112 AC103362.1 lincRNA Interval_164351 chr9 35597009 35597196 + 0 NA intron (ENSMUSG00000074452.13, intron 2 of 4) protein_coding-intron (ENSMUSG00000074452.13, intron 2 of 10) -7752 ENSMUSG00000094676.3 ENSMUSG00000094676 ENSMUST00000184601 Gm10105 processed_pseudogene Interval_35859 chr12 31275165 31276099 + 0 NA intron (ENSMUSG00000002900.17, intron 4 of 32) protein_coding-intron (ENSMUSG00000002900.17, intron 4 of 32) 10338 ENSMUSG00000002900.17 ENSMUSG00000002900 ENSMUST00000172134 Lamb1 protein_coding Interval_134546 chr6 29473703 29474923 + 0 NA TTS (ENSMUSG00000090685.1) protein_coding-TTS (ENSMUSG00000090685.1) 2876 ENSMUSG00000090685.1 ENSMUSG00000090685 ENSMUST00000171317 Atp6v1fnb protein_coding Interval_179 JH792828.1 180974 181301 + 0 NA NA NA NA NA Interval_103908 chr3 54797129 54798308 + 0 NA exon (ENSMUSG00000027796.2, exon 6 of 6) protein_coding-exon (ENSMUSG00000027796.2, exon 6 of 6) 8048 ENSMUSG00000036615.7 ENSMUSG00000036615 ENSMUST00000182084 Rfxap protein_coding Interval_153713 chr8 4976700 4976919 + 0 NA Intergenic Intergenic 92568 ENSMUSG00000096219.1 ENSMUSG00000096219 ENSMUST00000180091 n-R5s93 rRNA Interval_63254 chr15 99946222 99946982 + 0 NA exon (ENSMUSG00000045350.15, exon 4 of 8) protein_coding-exon (ENSMUSG00000045350.15, exon 4 of 8) -9161 ENSMUSG00000077443.1 ENSMUSG00000077443 ENSMUST00000104255 Gm23133 snRNA Interval_19530 chr10 102372336 102372573 + 0 NA exon (ENSMUSG00000019888.16, exon 1 of 1) protein_coding-exon (ENSMUSG00000019888.16, exon 1 of 1) -43429 ENSMUSG00000111990.1 ENSMUSG00000111990 ENSMUST00000218629 Gm47033 lincRNA Interval_130944 chr5 134183831 134184899 + 0 NA intron (ENSMUSG00000015942.9, intron 1 of 18) protein_coding-intron (ENSMUSG00000015942.9, intron 1 of 15) 8019 ENSMUSG00000104195.1 ENSMUSG00000104195 ENSMUST00000192229 B230377A18Rik TEC Interval_46554 chr13 67092899 67093129 + 0 NA TTS (ENSMUSG00000114516.1) antisense-TTS (ENSMUSG00000114516.1) 3529 ENSMUSG00000114603.1 ENSMUSG00000114603 ENSMUST00000225725 Gm17938 processed_pseudogene Interval_51320 chr14 26385298 26386402 + 0 NA intron (ENSMUSG00000021874.12, intron 4 of 6) lincRNA-intron (ENSMUSG00000021874.12, intron 4 of 7) -3349 ENSMUSG00000090104.1 ENSMUSG00000090104 ENSMUST00000160089 Slmapos2 lincRNA Interval_47801 chr13 93095031 93095586 + 0 NA exon (ENSMUSG00000047419.5, exon 2 of 13) protein_coding-exon (ENSMUSG00000047419.5, exon 2 of 13) 475 ENSMUSG00000114968.1 ENSMUSG00000114968 ENSMUST00000224009 A630019I02Rik antisense Interval_101138 chr2 178406810 178407879 + 0 NA promoter-TSS (ENSMUSG00000060445.11) protein_coding-promoter-TSS (ENSMUSG00000060445.11) 78 ENSMUSG00000060445.11 ENSMUSG00000060445 ENSMUST00000138175 Sycp2 protein_coding Interval_130852 chr5 132611704 132612705 + 0 NA Intergenic Intergenic 66148 ENSMUSG00000105809.1 ENSMUSG00000105809 ENSMUST00000196866 Gm42626 lincRNA Interval_108904 chr3 133154539 133155024 + 0 NA intron (ENSMUSG00000040969.14, intron 4 of 13) protein_coding-intron (ENSMUSG00000040969.14, intron 4 of 13) 54394 ENSMUSG00000028016.9 ENSMUSG00000028016 ENSMUST00000160669 Ints12 protein_coding Interval_106787 chr3 100825250 100825774 + 0 NA promoter-TSS (ENSMUSG00000051076.8) protein_coding-promoter-TSS (ENSMUSG00000051076.8) 53 ENSMUSG00000051076.8 ENSMUSG00000051076 ENSMUST00000054791 Vtcn1 protein_coding Interval_102556 chr3 27736252 27736623 + 0 NA Intergenic Intergenic -26039 ENSMUSG00000039286.12 ENSMUSG00000039286 ENSMUST00000193779 Fndc3b protein_coding Interval_21115 chr10 126618921 126620702 + 0 NA Intergenic Intergenic -33007 ENSMUSG00000112435.1 ENSMUSG00000112435 ENSMUST00000220216 Gm47965 processed_pseudogene Interval_149113 chr7 93743800 93744083 + 0 NA Intergenic Intergenic -83386 ENSMUSG00000109440.1 ENSMUSG00000109440 ENSMUST00000208471 Bc1-ps1 scRNA Interval_17064 chr10 70975871 70976072 + 0 NA exon (ENSMUSG00000112745.1, exon 2 of 2) sense_intronic-exon (ENSMUSG00000112745.1, exon 2 of 2) 17069 ENSMUSG00000112745.1 ENSMUSG00000112745 ENSMUST00000219321 Gm48025 sense_intronic Interval_32789 chr11 110654803 110655283 + 0 NA Intergenic Intergenic 110536 ENSMUSG00000085985.1 ENSMUSG00000085985 ENSMUST00000144689 Gm11682 lincRNA Interval_155473 chr8 33805080 33805572 + 0 NA intron (ENSMUSG00000031586.17, intron 6 of 6) protein_coding-intron (ENSMUSG00000031586.17, intron 5 of 7) -7877 ENSMUSG00000097442.1 ENSMUSG00000097442 ENSMUST00000181120 Gm26632 antisense Interval_10895 chr1 176698557 176698894 + 0 NA Intergenic Intergenic -1892 ENSMUSG00000087875.1 ENSMUSG00000087875 ENSMUST00000157250 Gm26104 snRNA Interval_150475 chr7 110989918 110990908 + 0 NA Intergenic Intergenic -8209 ENSMUSG00000005611.15 ENSMUSG00000005611 ENSMUST00000154466 Mrvi1 protein_coding Interval_116481 chr4 114438739 114439009 + 0 NA intron (ENSMUSG00000070867.4, intron 2 of 6) protein_coding-intron (ENSMUSG00000070867.4, intron 2 of 6) 32150 ENSMUSG00000070867.4 ENSMUSG00000070867 ENSMUST00000094894 Trabd2b protein_coding Interval_135646 chr6 42290691 42291230 + 0 NA intron (ENSMUSG00000029862.16, intron 3 of 7) protein_coding-intron (ENSMUSG00000029862.16, intron 3 of 22) 4275 ENSMUSG00000029862.16 ENSMUSG00000029862 ENSMUST00000169902 Clcn1 protein_coding Interval_49348 chr13 111410910 111411143 + 0 NA Intergenic Intergenic -42346 ENSMUSG00000086201.1 ENSMUSG00000086201 ENSMUST00000132731 Gm6270 lincRNA Interval_28004 chr11 72118913 72119260 + 0 NA intron (ENSMUSG00000040543.16, intron 2 of 7) protein_coding-intron (ENSMUSG00000040543.16, intron 2 of 19) 16692 ENSMUSG00000040543.16 ENSMUSG00000040543 ENSMUST00000142471 Pitpnm3 protein_coding Interval_135097 chr6 35348701 35349336 + 0 NA Intergenic Intergenic 18172 ENSMUSG00000107341.1 ENSMUSG00000107341 ENSMUST00000201560 1700065J11Rik lincRNA Interval_105292 chr3 84631467 84631826 + 0 NA intron (ENSMUSG00000102805.5, intron 3 of 9) protein_coding-intron (ENSMUSG00000102805.5, intron 3 of 9) -34564 ENSMUSG00000056498.13 ENSMUSG00000056498 ENSMUST00000128344 Tmem154 protein_coding Interval_5766 chr1 91587307 91587553 + 0 NA Intergenic Intergenic -23976 ENSMUSG00000101705.1 ENSMUSG00000101705 ENSMUST00000188800 Gm28380 lincRNA Interval_105261 chr3 84314656 84315145 + 0 NA Intergenic Intergenic -8023 ENSMUSG00000027993.16 ENSMUSG00000027993 ENSMUST00000197845 Trim2 protein_coding Interval_159144 chr8 91034376 91035011 + 0 NA intron (ENSMUSG00000056608.14, intron 29 of 36) protein_coding-intron (ENSMUSG00000056608.14, intron 32 of 39) -20571 ENSMUSG00000110377.1 ENSMUSG00000110377 ENSMUST00000210196 Gm45363 TEC Interval_103819 chr3 53323201 53323509 + 0 NA Intergenic Intergenic 23874 ENSMUSG00000106660.1 ENSMUSG00000106660 ENSMUST00000200175 Gm43472 processed_pseudogene Interval_25355 chr11 46631454 46632768 + 0 NA Intergenic Intergenic -2850 ENSMUSG00000064010.12 ENSMUSG00000064010 ENSMUST00000109227 Dppa1 protein_coding Interval_55697 chr14 99099299 99100376 + 0 NA promoter-TSS (ENSMUSG00000022064.10) protein_coding-promoter-TSS (ENSMUSG00000022064.10) -94 ENSMUSG00000022064.10 ENSMUSG00000022064 ENSMUST00000226935 Pibf1 protein_coding Interval_96642 chr2 126748133 126748398 + 0 NA exon (ENSMUSG00000027363.15, exon 13 of 19) protein_coding-exon (ENSMUSG00000027363.15, exon 13 of 19) 35193 ENSMUSG00000027364.14 ENSMUSG00000027364 ENSMUST00000151140 Usp50 protein_coding Interval_58194 chr15 30645508 30647504 + 0 NA promoter-TSS (ENSMUSG00000022240.10) protein_coding-promoter-TSS (ENSMUSG00000022240.10) -19885 ENSMUSG00000115337.1 ENSMUSG00000115337 ENSMUST00000228499 4930570B17Rik antisense Interval_141483 chr6 128546447 128546637 + 0 NA intron (ENSMUSG00000047228.9, intron 28 of 35) protein_coding-intron (ENSMUSG00000047228.9, intron 28 of 35) 6736 ENSMUSG00000047228.9 ENSMUSG00000047228 ENSMUST00000203129 A2ml1 protein_coding Interval_134776 chr6 31398523 31399692 + 0 NA promoter-TSS (ENSMUSG00000086212.7) lincRNA-promoter-TSS (ENSMUSG00000086212.7) 262 ENSMUSG00000025609.15 ENSMUSG00000025609 ENSMUST00000149859 Mkln1 protein_coding Interval_139514 chr6 100659256 100659612 + 0 NA intron (ENSMUSG00000035378.17, intron 4 of 10) protein_coding-intron (ENSMUSG00000035378.17, intron 4 of 7) 3029 ENSMUSG00000108122.1 ENSMUSG00000108122 ENSMUST00000204269 Gm44116 TEC Interval_28086 chr11 72735459 72736392 + 0 NA intron (ENSMUSG00000020790.14, intron 7 of 24) protein_coding-intron (ENSMUSG00000020790.14, intron 5 of 22) 45919 ENSMUSG00000020790.14 ENSMUSG00000020790 ENSMUST00000132889 Ankfy1 protein_coding Interval_150474 chr7 110982600 110983021 + 0 NA promoter-TSS (ENSMUSG00000005611.15) protein_coding-promoter-TSS (ENSMUSG00000005611.15) -606 ENSMUSG00000005611.15 ENSMUSG00000005611 ENSMUST00000154466 Mrvi1 protein_coding Interval_29442 chr11 84043028 84043646 + 0 NA exon (ENSMUSG00000034940.15, exon 20 of 20) protein_coding-exon (ENSMUSG00000034940.15, exon 20 of 20) 24136 ENSMUSG00000034940.15 ENSMUSG00000034940 ENSMUST00000132887 Synrg protein_coding Interval_71445 chr17 23785599 23786616 + 0 NA promoter-TSS (ENSMUSG00000023911.12) protein_coding-promoter-TSS (ENSMUSG00000023911.12) -55 ENSMUSG00000023911.12 ENSMUSG00000023911 ENSMUST00000127144 Flywch2 protein_coding Interval_22219 chr11 7229846 7230210 + 0 NA Intergenic Intergenic -16105 ENSMUSG00000020427.11 ENSMUSG00000020427 ENSMUST00000135887 Igfbp3 protein_coding Interval_101759 chr3 9441783 9442327 + 0 NA intron (ENSMUSG00000040209.12, intron 7 of 8) protein_coding-intron (ENSMUSG00000040209.12, intron 7 of 8) 38975 ENSMUSG00000097365.7 ENSMUSG00000097365 ENSMUST00000181930 C030034L19Rik lincRNA Interval_89500 chr2 21175396 21175771 + 0 NA Intergenic Intergenic 4500 ENSMUSG00000089472.1 ENSMUSG00000089472 ENSMUST00000158847 Gm25368 rRNA Interval_53736 chr14 61313358 61313586 + 0 NA intron (ENSMUSG00000101505.1, intron 1 of 1) antisense-intron (ENSMUSG00000101505.1, intron 1 of 1) 3638 ENSMUSG00000043157.8 ENSMUSG00000043157 ENSMUST00000224727 Arl11 protein_coding Interval_138078 chr6 85013873 85014228 + 0 NA intron (ENSMUSG00000033769.16, intron 1 of 2) protein_coding-intron (ENSMUSG00000033769.16, intron 1 of 16) -48524 ENSMUSG00000107629.1 ENSMUSG00000107629 ENSMUST00000203336 Gm44011 processed_pseudogene Interval_165749 chr9 52154386 52154786 + 0 NA intron (ENSMUSG00000035164.8, intron 1 of 5) protein_coding-intron (ENSMUSG00000035164.8, intron 1 of 5) 13986 ENSMUSG00000035164.8 ENSMUSG00000035164 ENSMUST00000165519 Zc3h12c protein_coding Interval_15017 chr10 41942224 41942913 + 0 NA intron (ENSMUSG00000071324.11, intron 11 of 16) protein_coding-intron (ENSMUSG00000071324.11, intron 12 of 17) 44195 ENSMUSG00000038332.13 ENSMUSG00000038332 ENSMUST00000214835 Sesn1 protein_coding Interval_58130 chr15 28243882 28245138 + 0 NA intron (ENSMUSG00000022262.8, intron 12 of 78) protein_coding-intron (ENSMUSG00000022262.8, intron 12 of 78) 40758 ENSMUSG00000022262.8 ENSMUSG00000022262 ENSMUST00000067048 Dnah5 protein_coding Interval_101027 chr2 174319045 174319363 + 0 NA intron (ENSMUSG00000027523.20, intron 2 of 12) protein_coding-intron (ENSMUSG00000027523.20, intron 1 of 11) -23768 ENSMUSG00000086537.7 ENSMUSG00000086537 ENSMUST00000143738 Gnasas1 antisense Interval_95765 chr2 115979824 115981713 + 0 NA intron (ENSMUSG00000027210.20, intron 3 of 3) protein_coding-intron (ENSMUSG00000027210.20, intron 8 of 11) 86676 ENSMUSG00000086328.1 ENSMUSG00000086328 ENSMUST00000140185 2700033N17Rik lincRNA Interval_21485 chr10 128857884 128858470 + 0 NA intron (ENSMUSG00000078427.3, intron 10 of 11) protein_coding-intron (ENSMUSG00000078427.3, intron 9 of 10) 33541 ENSMUSG00000025352.6 ENSMUSG00000025352 ENSMUST00000026408 Gdf11 protein_coding Interval_19609 chr10 105660605 105661020 + 0 NA Intergenic Intergenic 86859 ENSMUSG00000085282.8 ENSMUSG00000085282 ENSMUST00000145794 Gm15663 processed_transcript Interval_150276 chr7 109207352 109207588 + 0 NA TTS (ENSMUSG00000109001.1) lincRNA-TTS (ENSMUSG00000109001.1) 16730 ENSMUSG00000109001.1 ENSMUSG00000109001 ENSMUST00000208274 Gm45024 lincRNA Interval_84829 chr19 17225720 17226408 + 0 NA Intergenic Intergenic 14605 ENSMUSG00000117941.1 ENSMUSG00000117941 ENSMUST00000235246 Gm50276 lincRNA Interval_90365 chr2 30017863 30018761 + 0 NA intron (ENSMUSG00000057738.14, intron 39 of 56) protein_coding-intron (ENSMUSG00000057738.14, intron 38 of 54) 22362 ENSMUSG00000098453.1 ENSMUSG00000098453 ENSMUST00000184313 Mir6997 miRNA Interval_49005 chr13 106855436 106857830 + 0 NA intron (ENSMUSG00000042590.17, intron 1 of 5) protein_coding-intron (ENSMUSG00000042590.17, intron 24 of 29) 4733 ENSMUSG00000100833.1 ENSMUSG00000100833 ENSMUST00000191363 Gm28988 antisense Interval_46205 chr13 62470146 62470465 + 0 NA intron (ENSMUSG00000055228.8, intron 1 of 2) protein_coding-intron (ENSMUSG00000055228.8, intron 1 of 2) 3440 ENSMUSG00000076246.1 ENSMUSG00000076246 ENSMUST00000102291 Gm22256 miRNA Interval_110171 chr3 153950870 153951558 + 0 NA Intergenic Intergenic -13405 ENSMUSG00000062908.12 ENSMUSG00000062908 ENSMUST00000135724 Acadm protein_coding Interval_160533 chr8 110478609 110479709 + 0 NA intron (ENSMUSG00000059854.8, intron 24 of 25) protein_coding-intron (ENSMUSG00000059854.8, intron 24 of 86) -19693 ENSMUSG00000093112.2 ENSMUSG00000093112 ENSMUST00000175371 Gm22701 misc_RNA Interval_11886 chr1 186748613 186750012 + 0 NA promoter-TSS (ENSMUSG00000001305.5) protein_coding-promoter-TSS (ENSMUSG00000001305.5) 13 ENSMUSG00000001305.5 ENSMUSG00000001305 ENSMUST00000162336 Rrp15 protein_coding Interval_152242 chr7 130887931 130888943 + 0 NA intron (ENSMUSG00000040268.17, intron 4 of 10) protein_coding-intron (ENSMUSG00000040268.17, intron 3 of 9) 6085 ENSMUSG00000040268.17 ENSMUSG00000040268 ENSMUST00000135359 Plekha1 protein_coding Interval_105724 chr3 88925671 88926593 + 0 NA promoter-TSS (ENSMUSG00000068921.14) protein_coding-promoter-TSS (ENSMUSG00000068921.14) -12229 ENSMUSG00000068922.14 ENSMUSG00000068922 ENSMUST00000128988 Msto1 protein_coding Interval_118271 chr4 129965349 129966596 + 0 NA Intergenic Intergenic 5598 ENSMUSG00000085389.7 ENSMUSG00000085389 ENSMUST00000139884 1700003M07Rik lincRNA Interval_114516 chr4 81918300 81919146 + 0 NA TTS (ENSMUSG00000084718.1) rRNA-TTS (ENSMUSG00000084718.1) 210 ENSMUSG00000084718.1 ENSMUSG00000084718 ENSMUST00000122769 n-R5s187 rRNA Interval_41373 chr12 113146075 113147220 + 0 NA intron (ENSMUSG00000006360.11, intron 1 of 4) protein_coding-intron (ENSMUSG00000006360.11, intron 1 of 4) -5406 ENSMUSG00000006360.11 ENSMUSG00000006360 ENSMUST00000198909 Crip1 protein_coding Interval_159706 chr8 98572953 98573811 + 0 NA Intergenic Intergenic 101820 ENSMUSG00000080480.1 ENSMUSG00000080480 ENSMUST00000116830 Gm23494 snRNA Interval_135648 chr6 42316320 42317128 + 0 NA TTS (ENSMUSG00000029862.16) protein_coding-TTS (ENSMUSG00000029862.16) 7919 ENSMUSG00000029861.17 ENSMUSG00000029861 ENSMUST00000095974 Fam131b protein_coding Interval_140712 chr6 120786068 120786459 + 0 NA intron (ENSMUSG00000004902.7, intron 3 of 9) protein_coding-intron (ENSMUSG00000004902.7, intron 3 of 9) 11407 ENSMUSG00000093409.1 ENSMUSG00000093409 ENSMUST00000176615 Gm25193 miRNA Interval_114699 chr4 83958314 83959644 + 0 NA Intergenic Intergenic -70121 ENSMUSG00000085378.1 ENSMUSG00000085378 ENSMUST00000128214 Gm11415 lincRNA Interval_32408 chr11 107385414 107385797 + 0 NA intron (ENSMUSG00000040430.18, intron 1 of 9) protein_coding-intron (ENSMUSG00000040430.18, intron 1 of 9) -1378 ENSMUSG00000087683.1 ENSMUSG00000087683 ENSMUST00000129139 Gm11712 antisense Interval_147170 chr7 64024395 64024653 + 0 NA Intergenic Intergenic 16302 ENSMUSG00000108469.1 ENSMUSG00000108469 ENSMUST00000206525 Gm45054 lincRNA Interval_74192 chr17 47033730 47034258 + 0 NA Intergenic Intergenic 9045 ENSMUSG00000062472.6 ENSMUSG00000062472 ENSMUST00000075152 Gm4945 processed_pseudogene Interval_32485 chr11 107842275 107842667 + 0 NA Intergenic Intergenic -9274 ENSMUSG00000098991.1 ENSMUSG00000098991 ENSMUST00000184579 Gm27595 rRNA Interval_139386 chr6 99711746 99712438 + 0 NA TTS (ENSMUSG00000030069.15) protein_coding-TTS (ENSMUSG00000030069.15) -13679 ENSMUSG00000097548.1 ENSMUSG00000097548 ENSMUST00000180406 Gm26748 antisense Interval_153542 chr8 3336239 3337742 + 0 NA Intergenic Intergenic -16447 ENSMUSG00000004568.13 ENSMUSG00000004568 ENSMUST00000145360 Arhgef18 protein_coding Interval_137147 chr6 68150287 68150540 + 0 NA Intergenic Intergenic -1472 ENSMUSG00000106630.1 ENSMUSG00000106630 ENSMUST00000199327 Igkv2-116 IG_V_pseudogene Interval_133626 chr6 7744001 7744789 + 0 NA Intergenic Intergenic -21999 ENSMUSG00000107394.1 ENSMUSG00000107394 ENSMUST00000203458 1700012J15Rik lincRNA Interval_111594 chr4 24249548 24249809 + 0 NA Intergenic Intergenic 11578 ENSMUSG00000083154.1 ENSMUSG00000083154 ENSMUST00000117711 Gm11892 processed_pseudogene Interval_102461 chr3 26957826 26958231 + 0 NA intron (ENSMUSG00000039335.11, intron 10 of 10) protein_coding-intron (ENSMUSG00000039335.11, intron 10 of 10) -54736 ENSMUSG00000103712.1 ENSMUSG00000103712 ENSMUST00000194574 Gm37659 processed_pseudogene Interval_7706 chr1 133177560 133178098 + 0 NA intron (ENSMUSG00000041757.17, intron 3 of 9) protein_coding-intron (ENSMUSG00000041757.17, intron 3 of 9) -46047 ENSMUSG00000102425.1 ENSMUSG00000102425 ENSMUST00000193049 Gm26616 TEC Interval_48775 chr13 103096360 103097533 + 0 NA promoter-TSS (ENSMUSG00000034751.17) protein_coding-promoter-TSS (ENSMUSG00000034751.17) -101 ENSMUSG00000034751.17 ENSMUSG00000034751 ENSMUST00000187024 Mast4 protein_coding Interval_58699 chr15 37197982 37198717 + 0 NA Intergenic Intergenic -15648 ENSMUSG00000115621.1 ENSMUSG00000115621 ENSMUST00000226193 Gm8664 processed_pseudogene Interval_112763 chr4 44697808 44698454 + 0 NA intron (ENSMUSG00000014030.15, intron 1 of 9) protein_coding-intron (ENSMUSG00000014030.15, intron 1 of 9) -4669 ENSMUSG00000103995.1 ENSMUSG00000103995 ENSMUST00000192889 5730488B01Rik TEC Interval_60505 chr15 74515993 74517144 + 0 NA promoter-TSS (ENSMUSG00000034730.17) protein_coding-promoter-TSS (ENSMUSG00000034730.17) -47253 ENSMUSG00000093340.1 ENSMUSG00000093340 ENSMUST00000175599 Gm26117 miRNA Interval_103358 chr3 40391670 40392065 + 0 NA Intergenic Intergenic 117907 ENSMUSG00000037884.6 ENSMUSG00000037884 ENSMUST00000202778 1700017G19Rik lincRNA Interval_18394 chr10 85510410 85510742 + 0 NA intron (ENSMUSG00000020042.15, intron 1 of 16) protein_coding-intron (ENSMUSG00000020042.15, intron 1 of 9) -134627 ENSMUSG00000020042.15 ENSMUSG00000020042 ENSMUST00000145433 Btbd11 protein_coding Interval_154226 chr8 13587688 13588123 + 0 NA intron (ENSMUSG00000031453.16, intron 11 of 23) protein_coding-intron (ENSMUSG00000031453.16, intron 11 of 23) -25444 ENSMUSG00000031452.15 ENSMUSG00000031452 ENSMUST00000132787 1700029H14Rik protein_coding Interval_143684 chr7 14464489 14464970 + 0 NA TTS (ENSMUSG00000094156.2) protein_coding-TTS (ENSMUSG00000094156.2) 28242 ENSMUSG00000094156.2 ENSMUSG00000094156 ENSMUST00000211740 Sult2a7 protein_coding Interval_67693 chr16 55994210 55994435 + 0 NA intron (ENSMUSG00000022601.11, intron 5 of 10) protein_coding-intron (ENSMUSG00000022601.11, intron 5 of 10) -10870 ENSMUSG00000022601.11 ENSMUSG00000022601 ENSMUST00000184618 Zbtb11 protein_coding Interval_102374 chr3 22411723 22413571 + 0 NA Intergenic Intergenic -2596 ENSMUSG00000088846.1 ENSMUSG00000088846 ENSMUST00000158221 Gm26354 snoRNA Interval_19774 chr10 108675518 108675754 + 0 NA intron (ENSMUSG00000035864.14, intron 4 of 7) protein_coding-intron (ENSMUSG00000035864.14, intron 4 of 10) 24524 ENSMUSG00000112039.1 ENSMUSG00000112039 ENSMUST00000218023 Gm5136 protein_coding Interval_71769 chr17 25964382 25964735 + 0 NA promoter-TSS (ENSMUSG00000037326.10) protein_coding-promoter-TSS (ENSMUSG00000037326.10) -11993 ENSMUSG00000025727.8 ENSMUSG00000025727 ENSMUST00000162431 A930017K11Rik protein_coding Interval_167868 chr9 73162599 73163183 + 0 NA Intergenic Intergenic 12850 ENSMUSG00000066478.3 ENSMUSG00000066478 ENSMUST00000183748 Gm5745 processed_pseudogene Interval_31737 chr11 102547824 102549451 + 0 NA TTS (ENSMUSG00000065657.1) snRNA-TTS (ENSMUSG00000065657.1) 662 ENSMUSG00000065657.1 ENSMUSG00000065657 ENSMUST00000083723 Gm25337 snRNA Interval_3124 chr1 53715646 53715896 + 0 NA Intergenic Intergenic -8987 ENSMUSG00000096141.2 ENSMUSG00000096141 ENSMUST00000189677 Dnah7a protein_coding Interval_78442 chr18 12879861 12880777 + 0 NA promoter-TSS (ENSMUSG00000044252.18) protein_coding-promoter-TSS (ENSMUSG00000044252.18) 17890 ENSMUSG00000117494.1 ENSMUSG00000117494 ENSMUST00000234213 Gm49970 antisense Interval_151316 chr7 120941303 120941611 + 0 NA intron (ENSMUSG00000030880.14, intron 17 of 19) protein_coding-intron (ENSMUSG00000030880.14, intron 18 of 20) 6627 ENSMUSG00000030880.14 ENSMUSG00000030880 ENSMUST00000209014 Polr3e protein_coding Interval_37162 chr12 59080381 59082129 + 0 NA exon (ENSMUSG00000066487.3, exon 1 of 1) processed_pseudogene-exon (ENSMUSG00000066487.3, exon 1 of 1) 236 ENSMUSG00000066487.3 ENSMUSG00000066487 ENSMUST00000085368 Gm5786 processed_pseudogene Interval_59474 chr15 53558204 53558479 + 0 NA intron (ENSMUSG00000058656.13, intron 4 of 4) protein_coding-intron (ENSMUSG00000058656.13, intron 4 of 4) 54857 ENSMUSG00000077567.1 ENSMUSG00000077567 ENSMUST00000104379 Gm23200 snoRNA Interval_35464 chr12 22739954 22740221 + 0 NA Intergenic Intergenic 5324 ENSMUSG00000113574.1 ENSMUSG00000113574 ENSMUST00000223354 Gm48037 processed_pseudogene Interval_117086 chr4 119445494 119445878 + 0 NA intron (ENSMUSG00000070806.5, intron 1 of 2) protein_coding-intron (ENSMUSG00000070806.5, intron 5 of 7) 22814 ENSMUSG00000070806.5 ENSMUSG00000070806 ENSMUST00000129150 Zmynd12 protein_coding Interval_155065 chr8 26091474 26092886 + 0 NA exon (ENSMUSG00000037234.17, exon 1 of 1) protein_coding-exon (ENSMUSG00000037234.17, exon 1 of 1) 9571 ENSMUSG00000085437.8 ENSMUSG00000085437 ENSMUST00000144750 1700047A11Rik antisense Interval_60884 chr15 77481843 77482729 + 0 NA intron (ENSMUSG00000050982.13, intron 2 of 3) protein_coding-intron (ENSMUSG00000050982.13, intron 2 of 3) 5239 ENSMUSG00000050982.13 ENSMUSG00000050982 ENSMUST00000060551 Apol10a protein_coding Interval_129678 chr5 121686869 121687112 + 0 NA exon (ENSMUSG00000029458.14, exon 12 of 12) protein_coding-exon (ENSMUSG00000029458.14, exon 12 of 12) 4062 ENSMUSG00000029458.14 ENSMUSG00000029458 ENSMUST00000196897 Brap protein_coding Interval_21111 chr10 126591059 126591276 + 0 NA Intergenic Intergenic -4363 ENSMUSG00000112435.1 ENSMUSG00000112435 ENSMUST00000220216 Gm47965 processed_pseudogene Interval_39927 chr12 99838177 99838990 + 0 NA intron (ENSMUSG00000113147.1, intron 3 of 3) protein_coding-intron (ENSMUSG00000021176.6, intron 5 of 5) -6364 ENSMUSG00000113540.1 ENSMUSG00000113540 ENSMUST00000222111 Gm47206 TEC Interval_33198 chr11 115172823 115175300 + 0 NA intron (ENSMUSG00000020733.3, intron 1 of 5) protein_coding-intron (ENSMUSG00000020733.3, intron 1 of 5) 10720 ENSMUSG00000020733.3 ENSMUSG00000020733 ENSMUST00000021077 Slc9a3r1 protein_coding Interval_8886 chr1 151824018 151824463 + 0 NA Intergenic Intergenic 30715 ENSMUSG00000084557.1 ENSMUSG00000084557 ENSMUST00000122608 Gm25279 snRNA Interval_166883 chr9 63644667 63645345 + 0 NA TTS (ENSMUSG00000037257.8) protein_coding-TTS (ENSMUSG00000037257.8) 28018 ENSMUSG00000037257.8 ENSMUSG00000037257 ENSMUST00000213702 Aagab protein_coding Interval_120447 chr4 148668900 148669148 + 0 NA intron (ENSMUSG00000070577.5, intron 10 of 10) protein_coding-intron (ENSMUSG00000070577.5, intron 10 of 10) 25707 ENSMUSG00000070577.5 ENSMUSG00000070577 ENSMUST00000105698 Gm572 protein_coding Interval_163261 chr9 20284313 20284574 + 0 NA intron (ENSMUSG00000059623.6, intron 1 of 1) protein_coding-intron (ENSMUSG00000059623.6, intron 1 of 1) 2092 ENSMUSG00000059623.6 ENSMUSG00000059623 ENSMUST00000212983 Olfr39 protein_coding Interval_148837 chr7 89200677 89203260 + 0 NA intron (ENSMUSG00000039428.11, intron 3 of 5) protein_coding-intron (ENSMUSG00000039428.11, intron 5 of 14) 15129 ENSMUSG00000109576.1 ENSMUSG00000109576 ENSMUST00000208963 Gm44704 TEC Interval_111791 chr4 29138880 29139134 + 0 NA Intergenic Intergenic 13061 ENSMUSG00000080911.1 ENSMUSG00000080911 ENSMUST00000121660 Gm11918 processed_pseudogene Interval_145274 chr7 31084052 31085632 + 0 NA Intergenic Intergenic -8197 ENSMUSG00000057092.12 ENSMUSG00000057092 ENSMUST00000170456 Fxyd3 protein_coding Interval_9581 chr1 159656937 159657592 + 0 NA intron (ENSMUSG00000073528.7, intron 1 of 1) processed_transcript-intron (ENSMUSG00000073528.7, intron 1 of 1) -24398 ENSMUSG00000073528.7 ENSMUSG00000073528 ENSMUST00000194909 Gm10530 processed_transcript Interval_57499 chr15 11862437 11863292 + 0 NA intron (ENSMUSG00000022206.7, intron 3 of 7) protein_coding-intron (ENSMUSG00000022206.7, intron 3 of 7) 42810 ENSMUSG00000022206.7 ENSMUSG00000022206 ENSMUST00000226878 Npr3 protein_coding Interval_139747 chr6 108333809 108334973 + 0 NA intron (ENSMUSG00000030102.11, intron 1 of 22) protein_coding-intron (ENSMUSG00000030102.11, intron 4 of 61) -53043 ENSMUSG00000030102.11 ENSMUSG00000030102 ENSMUST00000205005 Itpr1 protein_coding Interval_581 chr1 7843370 7844200 + 0 NA Intergenic Intergenic -113220 ENSMUSG00000103557.1 ENSMUSG00000103557 ENSMUST00000194872 Gm38216 processed_pseudogene Interval_151550 chr7 123461772 123462454 + 0 NA promoter-TSS (ENSMUSG00000030762.11) protein_coding-promoter-TSS (ENSMUSG00000030762.11) -1638 ENSMUSG00000030762.11 ENSMUSG00000030762 ENSMUST00000206106 Aqp8 protein_coding Interval_18280 chr10 84533242 84534766 + 0 NA promoter-TSS (ENSMUSG00000046841.5) protein_coding-promoter-TSS (ENSMUSG00000046841.5) 32 ENSMUSG00000046841.5 ENSMUSG00000046841 ENSMUST00000167671 Ckap4 protein_coding Interval_145043 chr7 29670816 29671655 + 0 NA Intergenic Intergenic -13959 ENSMUSG00000065385.1 ENSMUSG00000065385 ENSMUST00000083451 n-R5s153 rRNA Interval_129641 chr5 121497697 121498133 + 0 NA intron (ENSMUSG00000029452.18, intron 11 of 11) protein_coding-intron (ENSMUSG00000029452.18, intron 11 of 11) 5520 ENSMUSG00000062438.4 ENSMUSG00000062438 ENSMUST00000079368 Adam1b protein_coding Interval_19690 chr10 108088189 108088945 + 0 NA Intergenic Intergenic 53865 ENSMUSG00000112401.1 ENSMUSG00000112401 ENSMUST00000219675 Gm47999 processed_pseudogene Interval_39487 chr12 88380944 88382066 + 0 NA intron (ENSMUSG00000021044.15, intron 3 of 10) protein_coding-intron (ENSMUSG00000021044.15, intron 3 of 10) -4182 ENSMUSG00000113434.1 ENSMUSG00000113434 ENSMUST00000221603 3200001D21Rik antisense Interval_123318 chr5 31360934 31361521 + 0 NA Intergenic Intergenic -4432 ENSMUSG00000106935.1 ENSMUSG00000106935 ENSMUST00000200995 Gm19457 processed_pseudogene Interval_30439 chr11 94361005 94361325 + 0 NA intron (ENSMUSG00000020865.16, intron 19 of 30) protein_coding-intron (ENSMUSG00000020865.16, intron 19 of 30) 27712 ENSMUSG00000020864.13 ENSMUSG00000020864 ENSMUST00000124087 Ankrd40 protein_coding Interval_160093 chr8 106354459 106354791 + 0 NA Intergenic Intergenic -60702 ENSMUSG00000031907.9 ENSMUSG00000031907 ENSMUST00000212874 Zfp90 protein_coding Interval_51898 chr14 33475984 33476242 + 0 NA intron (ENSMUSG00000108841.1, intron 1 of 29) protein_coding-intron (ENSMUSG00000108841.1, intron 1 of 29) 4417 ENSMUSG00000108841.1 ENSMUSG00000108841 ENSMUST00000208380 Frmpd2 protein_coding Interval_118307 chr4 130188648 130189540 + 0 NA Intergenic Intergenic -14302 ENSMUSG00000028776.14 ENSMUSG00000028776 ENSMUST00000133660 Tinagl1 protein_coding Interval_41590 chr12 116599658 116600264 + 0 NA intron (ENSMUSG00000056553.14, intron 2 of 4) protein_coding-intron (ENSMUSG00000056553.14, intron 2 of 22) 2708 ENSMUSG00000101814.1 ENSMUSG00000101814 ENSMUST00000186869 Gm17807 processed_pseudogene Interval_17834 chr10 80314659 80315040 + 0 NA exon (ENSMUSG00000020135.13, exon 14 of 14) protein_coding-exon (ENSMUSG00000020135.13, exon 14 of 14) 5688 ENSMUSG00000020133.8 ENSMUSG00000020133 ENSMUST00000020341 2310011J03Rik protein_coding Interval_161620 chr8 121607743 121608011 + 0 NA promoter-TSS (ENSMUSG00000061410.6) protein_coding-promoter-TSS (ENSMUSG00000061410.6) -3363 ENSMUSG00000061410.6 ENSMUSG00000061410 ENSMUST00000134212 Zcchc14 protein_coding Interval_34270 chr11 121886127 121886475 + 0 NA TTS (ENSMUSG00000082947.1) processed_pseudogene-TTS (ENSMUSG00000082947.1) 667 ENSMUSG00000082947.1 ENSMUSG00000082947 ENSMUST00000120180 Gm12587 processed_pseudogene Interval_51409 chr14 27293891 27294081 + 0 NA intron (ENSMUSG00000021895.10, intron 5 of 13) protein_coding-intron (ENSMUSG00000021895.10, intron 2 of 10) 55924 ENSMUSG00000114888.1 ENSMUSG00000114888 ENSMUST00000225718 Gm49616 TEC Interval_157794 chr8 73282210 73282718 + 0 NA intron (ENSMUSG00000004383.18, intron 1 of 14) protein_coding-intron (ENSMUSG00000004383.18, intron 1 of 14) 71076 ENSMUSG00000004383.18 ENSMUSG00000004383 ENSMUST00000146249 Large1 protein_coding Interval_128667 chr5 114611021 114612778 + 0 NA exon (ENSMUSG00000041930.7, exon 3 of 3) protein_coding-exon (ENSMUSG00000041930.7, exon 3 of 3) 33000 ENSMUSG00000014158.12 ENSMUSG00000014158 ENSMUST00000212469 Trpv4 protein_coding Interval_102989 chr3 34052475 34053008 + 0 NA intron (ENSMUSG00000027680.15, intron 9 of 15) protein_coding-intron (ENSMUSG00000027680.15, intron 9 of 16) 2688 ENSMUSG00000105135.1 ENSMUSG00000105135 ENSMUST00000198616 Gm43667 TEC Interval_104581 chr3 68511643 68512360 + 0 NA intron (ENSMUSG00000027777.15, intron 2 of 5) protein_coding-intron (ENSMUSG00000027777.15, intron 2 of 7) 18510 ENSMUSG00000027777.15 ENSMUSG00000027777 ENSMUST00000182360 Schip1 protein_coding Interval_173264 chrX 75745694 75745973 + 0 NA intron (ENSMUSG00000087396.7, intron 2 of 4) processed_transcript-intron (ENSMUSG00000087396.7, intron 2 of 3) 22161 ENSMUSG00000081996.1 ENSMUSG00000081996 ENSMUST00000117092 Gm7153 processed_pseudogene Interval_147661 chr7 70929986 70930282 + 0 NA intron (ENSMUSG00000109532.1, intron 1 of 3) lincRNA-intron (ENSMUSG00000109532.1, intron 1 of 2) -17314 ENSMUSG00000109454.1 ENSMUSG00000109454 ENSMUST00000209159 Gm34783 processed_pseudogene Interval_158317 chr8 81096847 81097935 + 0 NA Intergenic Intergenic 36057 ENSMUSG00000109980.1 ENSMUSG00000109980 ENSMUST00000210771 Gm45538 lincRNA Interval_142170 chr6 137777977 137778246 + 0 NA exon (ENSMUSG00000030225.11, exon 1 of 2) protein_coding-exon (ENSMUSG00000030225.11, exon 1 of 2) 33071 ENSMUSG00000030224.10 ENSMUSG00000030224 ENSMUST00000137235 Strap protein_coding Interval_112096 chr4 34661704 34662296 + 0 NA Intergenic Intergenic -21879 ENSMUSG00000088338.1 ENSMUSG00000088338 ENSMUST00000157713 Gm22849 misc_RNA Interval_30903 chr11 97160244 97161095 + 0 NA promoter-TSS (ENSMUSG00000084936.1) antisense-promoter-TSS (ENSMUSG00000084936.1) -321 ENSMUSG00000084936.1 ENSMUSG00000084936 ENSMUST00000132296 Gm11583 antisense Interval_128369 chr5 112859322 112859533 + 0 NA intron (ENSMUSG00000072720.9, intron 6 of 16) protein_coding-intron (ENSMUSG00000072720.9, intron 11 of 43) 13069 ENSMUSG00000072720.9 ENSMUSG00000072720 ENSMUST00000183273 Myo18b protein_coding Interval_108691 chr3 130174321 130174587 + 0 NA intron (ENSMUSG00000058897.18, intron 5 of 5) protein_coding-intron (ENSMUSG00000058897.18, intron 5 of 5) -7030 ENSMUSG00000058897.18 ENSMUSG00000058897 ENSMUST00000198205 Col25a1 protein_coding Interval_14015 chr10 25493312 25493550 + 0 NA intron (ENSMUSG00000019978.16, intron 1 of 7) protein_coding-intron (ENSMUSG00000019978.16, intron 12 of 19) -1192 ENSMUSG00000019978.16 ENSMUSG00000019978 ENSMUST00000219201 Epb41l2 protein_coding Interval_109589 chr3 144801999 144802239 + 0 NA TTS (ENSMUSG00000028262.13) protein_coding-TTS (ENSMUSG00000028262.13) 3686 ENSMUSG00000028262.13 ENSMUSG00000028262 ENSMUST00000159643 Clca3a2 protein_coding Interval_140134 chr6 114697307 114698658 + 0 NA intron (ENSMUSG00000030314.16, intron 8 of 16) protein_coding-intron (ENSMUSG00000030314.16, intron 9 of 18) 14698 ENSMUSG00000030314.16 ENSMUSG00000030314 ENSMUST00000182934 Atg7 protein_coding Interval_115221 chr4 94536682 94536918 + 0 NA intron (ENSMUSG00000028578.8, intron 4 of 5) protein_coding-intron (ENSMUSG00000028578.8, intron 4 of 5) 19966 ENSMUSG00000028578.8 ENSMUSG00000028578 ENSMUST00000153294 Caap1 protein_coding Interval_148741 chr7 84954215 84954922 + 0 NA intron (ENSMUSG00000066372.6, intron 1 of 6) protein_coding-intron (ENSMUSG00000066372.6, intron 1 of 5) 9547 ENSMUSG00000066372.6 ENSMUSG00000066372 ENSMUST00000233469 Vmn2r65 protein_coding Interval_168915 chr9 88566567 88566988 + 0 NA intron (ENSMUSG00000032425.15, intron 3 of 4) protein_coding-intron (ENSMUSG00000032425.15, intron 4 of 4) 13541 ENSMUSG00000092805.2 ENSMUSG00000092805 ENSMUST00000175064 Gm26461 misc_RNA Interval_113446 chr4 55040305 55041800 + 0 NA intron (ENSMUSG00000060206.11, intron 7 of 12) protein_coding-intron (ENSMUSG00000060206.11, intron 5 of 10) -75511 ENSMUSG00000082704.1 ENSMUSG00000082704 ENSMUST00000120116 Gm12515 processed_pseudogene Interval_73081 chr17 34660512 34661776 + 0 NA intron (ENSMUSG00000033327.18, intron 1 of 43) protein_coding-intron (ENSMUSG00000033327.18, intron 1 of 43) 687 ENSMUSG00000033327.18 ENSMUSG00000033327 ENSMUST00000087399 Tnxb protein_coding Interval_108320 chr3 123713782 123714388 + 0 NA Intergenic Intergenic -26113 ENSMUSG00000104860.1 ENSMUSG00000104860 ENSMUST00000196470 Gm42510 TEC Interval_60258 chr15 70856861 70857929 + 0 NA Intergenic Intergenic 99342 ENSMUSG00000116449.1 ENSMUSG00000116449 ENSMUST00000229501 Gm18155 processed_pseudogene Interval_23901 chr11 28075241 28076346 + 0 NA Intergenic Intergenic 29758 ENSMUSG00000083201.1 ENSMUSG00000083201 ENSMUST00000119821 Gm12080 processed_pseudogene Interval_82431 chr18 73947806 73949331 + 0 NA intron (ENSMUSG00000024558.12, intron 2 of 3) protein_coding-intron (ENSMUSG00000024558.12, intron 2 of 5) -69339 ENSMUSG00000090263.1 ENSMUSG00000090263 ENSMUST00000159260 D730045A05Rik lincRNA Interval_49432 chr13 111943841 111944514 + 0 NA Intergenic Intergenic -47289 ENSMUSG00000086402.1 ENSMUSG00000086402 ENSMUST00000142621 Gm15322 lincRNA Interval_15251 chr10 43777828 43778132 + 0 NA Intergenic Intergenic 32124 ENSMUSG00000111422.1 ENSMUSG00000111422 ENSMUST00000215747 1700027J07Rik lincRNA Interval_114835 chr4 86053436 86054221 + 0 NA promoter-TSS (ENSMUSG00000066113.16) protein_coding-promoter-TSS (ENSMUSG00000066113.16) -10334 ENSMUSG00000064687.1 ENSMUSG00000064687 ENSMUST00000082753 Gm25811 snRNA Interval_125883 chr5 75377013 75378185 + 0 NA Intergenic Intergenic -5454 ENSMUSG00000088210.1 ENSMUSG00000088210 ENSMUST00000157585 Gm22084 snRNA Interval_15117 chr10 42669069 42669473 + 0 NA intron (ENSMUSG00000038280.12, intron 2 of 6) protein_coding-intron (ENSMUSG00000038280.12, intron 2 of 5) -9695 ENSMUSG00000038280.12 ENSMUSG00000038280 ENSMUST00000154048 Ostm1 protein_coding Interval_130505 chr5 128460252 128461219 + 0 NA Intergenic Intergenic 11831 ENSMUSG00000104727.1 ENSMUSG00000104727 ENSMUST00000199898 Gm42500 lincRNA Interval_93179 chr2 70908460 70910593 + 0 NA Intergenic Intergenic 31697 ENSMUSG00000085868.1 ENSMUSG00000085868 ENSMUST00000150119 Gm13632 lincRNA Interval_157507 chr8 71007942 71008775 + 0 NA intron (ENSMUSG00000101854.2, intron 4 of 4) lincRNA-intron (ENSMUSG00000101854.2, intron 2 of 2) -18434 ENSMUSG00000110554.1 ENSMUSG00000110554 ENSMUST00000212780 Gm35256 lincRNA Interval_153799 chr8 8700089 8701276 + 0 NA Intergenic Intergenic -10520 ENSMUSG00000098917.1 ENSMUSG00000098917 ENSMUST00000185082 Mir7654 miRNA Interval_27087 chr11 62794481 62794941 + 0 NA Intergenic Intergenic -5290 ENSMUSG00000047342.17 ENSMUSG00000047342 ENSMUST00000149215 Zfp286 protein_coding Interval_392 chr1 4851805 4852616 + 0 NA intron (ENSMUSG00000104217.1, intron 7 of 9) protein_coding-intron (ENSMUSG00000104217.1, intron 7 of 9) -5828 ENSMUSG00000033813.15 ENSMUSG00000033813 ENSMUST00000165720 Tcea1 protein_coding Interval_161342 chr8 119853139 119854312 + 0 NA Intergenic Intergenic -8544 ENSMUSG00000031828.9 ENSMUSG00000031828 ENSMUST00000034287 Klhl36 protein_coding Interval_87862 chr19 56655026 56655734 + 0 NA Intergenic Intergenic 9231 ENSMUSG00000117890.1 ENSMUSG00000117890 ENSMUST00000237615 Gm32441 lincRNA Interval_33826 chr11 118783130 118783500 + 0 NA intron (ENSMUSG00000025576.17, intron 2 of 14) protein_coding-intron (ENSMUSG00000025576.17, intron 2 of 14) -8057 ENSMUSG00000085059.1 ENSMUSG00000085059 ENSMUST00000146016 Gm11750 lincRNA Interval_20649 chr10 119983921 119984611 + 0 NA intron (ENSMUSG00000034813.18, intron 8 of 20) protein_coding-intron (ENSMUSG00000034813.18, intron 9 of 22) 128599 ENSMUSG00000020228.11 ENSMUSG00000020228 ENSMUST00000154501 Helb protein_coding Interval_2324 chr1 38058294 38059025 + 0 NA promoter-TSS (ENSMUSG00000026082.11) protein_coding-promoter-TSS (ENSMUSG00000026082.11) 14025 ENSMUSG00000026083.12 ENSMUSG00000026083 ENSMUST00000195664 Eif5b protein_coding Interval_162134 chr8 125419675 125419981 + 0 NA intron (ENSMUSG00000001995.9, intron 22 of 22) protein_coding-intron (ENSMUSG00000001995.9, intron 20 of 20) 149980 ENSMUSG00000001995.9 ENSMUSG00000001995 ENSMUST00000212604 Sipa1l2 protein_coding Interval_39275 chr12 86394923 86396364 + 0 NA intron (ENSMUSG00000021255.17, intron 1 of 6) protein_coding-intron (ENSMUSG00000021255.17, intron 1 of 6) 47666 ENSMUSG00000113230.1 ENSMUSG00000113230 ENSMUST00000221001 Gm48101 processed_pseudogene Interval_139442 chr6 100212630 100213889 + 0 NA Intergenic Intergenic -34873 ENSMUSG00000108269.1 ENSMUSG00000108269 ENSMUST00000203798 Gm18422 transcribed_processed_pseudogene Interval_88256 chr19 61193997 61194182 + 0 NA Intergenic Intergenic 10199 ENSMUSG00000069475.1 ENSMUSG00000069475 ENSMUST00000092094 Gm6020 protein_coding Interval_43450 chr13 31270490 31270760 + 0 NA Intergenic Intergenic -29539 ENSMUSG00000087460.2 ENSMUSG00000087460 ENSMUST00000153175 4930401O12Rik lincRNA Interval_108461 chr3 127423081 127423587 + 0 NA intron (ENSMUSG00000032826.19, intron 1 of 1) protein_coding-intron (ENSMUSG00000032826.19, intron 1 of 1) -29628 ENSMUSG00000105822.1 ENSMUSG00000105822 ENSMUST00000199858 Gm42969 TEC Interval_173920 chrX 111739375 111740650 + 0 NA Intergenic Intergenic -42933 ENSMUSG00000034551.12 ENSMUSG00000034551 ENSMUST00000038472 Hdx protein_coding Interval_22485 chr11 10978615 10979523 + 0 NA Intergenic Intergenic -137416 ENSMUSG00000050830.17 ENSMUSG00000050830 ENSMUST00000154155 Vwc2 protein_coding Interval_68694 chr16 84786928 84787225 + 0 NA intron (ENSMUSG00000053062.16, intron 1 of 9) protein_coding-intron (ENSMUSG00000053062.16, intron 1 of 3) -6482 ENSMUSG00000053062.16 ENSMUSG00000053062 ENSMUST00000138054 Jam2 protein_coding Interval_72862 chr17 32750693 32751167 + 0 NA intron (ENSMUSG00000117443.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000117443.1, intron 1 of 2) 3268 ENSMUSG00000117443.1 ENSMUSG00000117443 ENSMUST00000234135 Gm50046 lincRNA Interval_135769 chr6 47184382 47185041 + 0 NA intron (ENSMUSG00000039419.17, intron 20 of 23) protein_coding-intron (ENSMUSG00000039419.17, intron 20 of 23) 139555 ENSMUSG00000107952.1 ENSMUSG00000107952 ENSMUST00000203583 Gm6352 processed_pseudogene Interval_147058 chr7 60255423 60256311 + 0 NA Intergenic Intergenic -16993 ENSMUSG00000109451.1 ENSMUSG00000109451 ENSMUST00000208834 Gm18129 processed_pseudogene Interval_112556 chr4 43108096 43108503 + 0 NA intron (ENSMUSG00000028456.18, intron 6 of 40) protein_coding-intron (ENSMUSG00000028456.18, intron 6 of 38) 28329 ENSMUSG00000077552.1 ENSMUSG00000077552 ENSMUST00000104364 Gm23709 snoRNA Interval_103892 chr3 54612315 54612990 + 0 NA Intergenic Intergenic 21916 ENSMUSG00000104831.1 ENSMUSG00000104831 ENSMUST00000197444 B020017C02Rik processed_pseudogene Interval_40623 chr12 106082392 106082885 + 0 NA Intergenic Intergenic -1732 ENSMUSG00000113427.1 ENSMUSG00000113427 ENSMUST00000222979 Gm46378 lincRNA Interval_70732 chr17 14013679 14014097 + 0 NA Intergenic Intergenic -10184 ENSMUSG00000101307.2 ENSMUSG00000101307 ENSMUST00000189454 Gm7356 protein_coding Interval_112701 chr4 44198695 44199832 + 0 NA intron (ENSMUSG00000035696.15, intron 1 of 3) protein_coding-intron (ENSMUSG00000035696.15, intron 1 of 3) 22004 ENSMUSG00000092677.1 ENSMUSG00000092677 ENSMUST00000174936 Mir5106 miRNA Interval_68431 chr16 76372010 76373893 + 0 NA promoter-TSS (ENSMUSG00000048490.14) protein_coding-promoter-TSS (ENSMUSG00000048490.14) 875 ENSMUSG00000048490.14 ENSMUSG00000048490 ENSMUST00000145649 Nrip1 protein_coding Interval_120839 chr4 150951376 150951743 + 0 NA intron (ENSMUSG00000014592.21, intron 24 of 24) protein_coding-intron (ENSMUSG00000014592.21, intron 24 of 24) -13176 ENSMUSG00000064476.1 ENSMUSG00000064476 ENSMUST00000082542 Gm23405 snRNA Interval_131420 chr5 137071993 137074303 + 0 NA promoter-TSS (ENSMUSG00000037411.10) protein_coding-promoter-TSS (ENSMUSG00000037411.10) -880 ENSMUSG00000037411.10 ENSMUSG00000037411 ENSMUST00000199832 Serpine1 protein_coding Interval_77075 chr17 86242638 86243596 + 0 NA intron (ENSMUSG00000045038.14, intron 1 of 14) protein_coding-intron (ENSMUSG00000045038.14, intron 2 of 15) 44061 ENSMUSG00000100738.1 ENSMUSG00000100738 ENSMUST00000191222 2010106C02Rik antisense Interval_107712 chr3 111614788 111615054 + 0 NA Intergenic Intergenic -174571 ENSMUSG00000105882.1 ENSMUSG00000105882 ENSMUST00000196237 Gm42905 TEC Interval_67321 chr16 46047028 46049358 + 0 NA intron (ENSMUSG00000022657.9, intron 11 of 14) protein_coding-intron (ENSMUSG00000022657.9, intron 11 of 14) -30020 ENSMUSG00000095243.1 ENSMUSG00000095243 ENSMUST00000177997 Gm24754 snRNA Interval_102154 chr3 18788997 18789567 + 0 NA Intergenic Intergenic 36205 ENSMUSG00000103264.1 ENSMUSG00000103264 ENSMUST00000194363 Gm30341 processed_pseudogene Interval_76159 chr17 75768426 75769576 + 0 NA Intergenic Intergenic -64836 ENSMUSG00000117587.1 ENSMUSG00000117587 ENSMUST00000235034 Gm50099 processed_pseudogene Interval_108004 chr3 119637977 119638251 + 0 NA TTS (ENSMUSG00000087806.1) snoRNA-TTS (ENSMUSG00000087806.1) 760 ENSMUSG00000087806.1 ENSMUSG00000087806 ENSMUST00000157181 Gm23432 snoRNA Interval_6524 chr1 114229843 114230416 + 0 NA Intergenic Intergenic -265995 ENSMUSG00000097648.1 ENSMUSG00000097648 ENSMUST00000180837 9330185C12Rik lincRNA Interval_705 chr1 10037538 10038243 + 0 NA promoter-TSS (ENSMUSG00000056763.16) protein_coding-promoter-TSS (ENSMUSG00000056763.16) 55 ENSMUSG00000025917.9 ENSMUSG00000025917 ENSMUST00000191296 Cops5 protein_coding Interval_135831 chr6 47779195 47782765 + 0 NA promoter-TSS (ENSMUSG00000064945.1) misc_RNA-promoter-TSS (ENSMUSG00000064945.1) -644 ENSMUSG00000064945.1 ENSMUSG00000064945 ENSMUST00000083011 Rny3 misc_RNA Interval_151556 chr7 123558665 123560197 + 0 NA Intergenic Intergenic -78502 ENSMUSG00000030757.13 ENSMUSG00000030757 ENSMUST00000128217 Zkscan2 protein_coding Interval_46347 chr13 64117625 64117861 + 0 NA intron (ENSMUSG00000033114.11, intron 1 of 3) protein_coding-intron (ENSMUSG00000033114.11, intron 4 of 11) 11593 ENSMUSG00000033114.11 ENSMUSG00000033114 ENSMUST00000222168 Slc35d2 protein_coding Interval_162128 chr8 125369375 125370401 + 0 NA Intergenic Intergenic -142565 ENSMUSG00000086694.1 ENSMUSG00000086694 ENSMUST00000156666 Gm16237 antisense Interval_142838 chr6 146339766 146340011 + 0 NA intron (ENSMUSG00000030287.15, intron 25 of 55) protein_coding-intron (ENSMUSG00000030287.15, intron 26 of 56) -36529 ENSMUSG00000107743.1 ENSMUSG00000107743 ENSMUST00000204247 Gm44087 TEC Interval_35763 chr12 29087062 29087742 + 0 NA Intergenic Intergenic 19335 ENSMUSG00000113544.1 ENSMUSG00000113544 ENSMUST00000222186 4833405L11Rik lincRNA Interval_110251 chr3 154880578 154881361 + 0 NA intron (ENSMUSG00000040086.13, intron 17 of 22) protein_coding-intron (ENSMUSG00000040086.13, intron 17 of 24) -40327 ENSMUSG00000102238.1 ENSMUSG00000102238 ENSMUST00000195610 Gm37890 TEC Interval_134321 chr6 25092980 25093473 + 0 NA Intergenic Intergenic -14323 ENSMUSG00000087867.1 ENSMUSG00000087867 ENSMUST00000157242 Gm24443 snoRNA Interval_35905 chr12 31812920 31813182 + 0 NA intron (ENSMUSG00000035933.5, intron 10 of 22) protein_coding-intron (ENSMUSG00000035933.5, intron 10 of 22) 36575 ENSMUSG00000111987.1 ENSMUSG00000111987 ENSMUST00000220137 Gm48809 antisense Interval_173802 chrX 104482464 104483637 + 0 NA exon (ENSMUSG00000073016.3, exon 1 of 7) protein_coding-exon (ENSMUSG00000073016.3, exon 1 of 7) 232 ENSMUSG00000073016.3 ENSMUSG00000073016 ENSMUST00000087867 Uprt protein_coding Interval_132088 chr5 142717499 142719814 + 0 NA intron (ENSMUSG00000050822.11, intron 8 of 10) protein_coding-intron (ENSMUSG00000050822.11, intron 8 of 10) 26144 ENSMUSG00000050822.11 ENSMUSG00000050822 ENSMUST00000058418 Slc29a4 protein_coding Interval_24420 chr11 33126526 33127278 + 0 NA intron (ENSMUSG00000057967.12, intron 2 of 3) protein_coding-intron (ENSMUSG00000057967.12, intron 3 of 4) 19893 ENSMUSG00000057967.12 ENSMUSG00000057967 ENSMUST00000020507 Fgf18 protein_coding Interval_57722 chr15 16810564 16811001 + 0 NA intron (ENSMUSG00000025370.7, intron 2 of 11) protein_coding-intron (ENSMUSG00000025370.7, intron 1 of 10) 40182 ENSMUSG00000115460.1 ENSMUSG00000115460 ENSMUST00000227900 Gm49127 antisense Interval_80895 chr18 49985537 49985850 + 0 NA intron (ENSMUSG00000062210.13, intron 1 of 3) protein_coding-intron (ENSMUSG00000062210.13, intron 1 of 1) -61047 ENSMUSG00000062210.13 ENSMUSG00000062210 ENSMUST00000148159 Tnfaip8 protein_coding Interval_122017 chr5 13992848 13993369 + 0 NA Intergenic Intergenic -34786 ENSMUSG00000105528.1 ENSMUSG00000105528 ENSMUST00000197239 Gm43519 TEC Interval_122869 chr5 26528851 26529800 + 0 NA Intergenic Intergenic -36036 ENSMUSG00000029044.9 ENSMUSG00000029044 ENSMUST00000196508 4930584F24Rik lincRNA Interval_131794 chr5 139930466 139933738 + 0 NA intron (ENSMUSG00000048988.8, intron 1 of 1) protein_coding-intron (ENSMUSG00000048988.8, intron 1 of 1) 23628 ENSMUSG00000048988.8 ENSMUSG00000048988 ENSMUST00000198608 Elfn1 protein_coding Interval_59536 chr15 55112032 55113608 + 0 NA exon (ENSMUSG00000053749.12, exon 1 of 2) processed_transcript-exon (ENSMUSG00000053749.12, exon 1 of 2) 857 ENSMUSG00000053749.12 ENSMUSG00000053749 ENSMUST00000137301 Gm9920 processed_transcript Interval_20511 chr10 118120903 118122568 + 0 NA intron (ENSMUSG00000112470.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000112470.1, intron 1 of 1) 9218 ENSMUSG00000112470.1 ENSMUSG00000112470 ENSMUST00000218667 5330439M10Rik lincRNA Interval_164207 chr9 32540083 32542481 + 0 NA exon (ENSMUSG00000016087.13, exon 1 of 9) protein_coding-exon (ENSMUSG00000016087.13, exon 1 of 9) 1579 ENSMUSG00000016087.13 ENSMUSG00000016087 ENSMUST00000183767 Fli1 protein_coding Interval_168602 chr9 84045884 84046095 + 0 NA intron (ENSMUSG00000032263.14, intron 1 of 3) protein_coding-intron (ENSMUSG00000032263.14, intron 8 of 10) -21172 ENSMUSG00000111757.1 ENSMUSG00000111757 ENSMUST00000215223 Gm46124 antisense Interval_28762 chr11 78158875 78159820 + 0 NA TTS (ENSMUSG00000017386.10) protein_coding-TTS (ENSMUSG00000017386.10) 6242 ENSMUSG00000017386.10 ENSMUSG00000017386 ENSMUST00000148218 Traf4 protein_coding Interval_23276 chr11 21111956 21112646 + 0 NA intron (ENSMUSG00000020134.13, intron 1 of 6) protein_coding-intron (ENSMUSG00000020134.13, intron 1 of 6) 12767 ENSMUSG00000084362.1 ENSMUSG00000084362 ENSMUST00000121233 2610024D14Rik processed_pseudogene Interval_109864 chr3 149115939 149117900 + 0 NA Intergenic Intergenic 87987 ENSMUSG00000065270.1 ENSMUSG00000065270 ENSMUST00000083336 Gm25127 snRNA Interval_36055 chr12 34189971 34190163 + 0 NA intron (ENSMUSG00000004698.11, intron 23 of 26) protein_coding-intron (ENSMUSG00000004698.11, intron 20 of 24) 101068 ENSMUSG00000113756.1 ENSMUSG00000113756 ENSMUST00000221733 Gm18025 processed_pseudogene Interval_83111 chr18 81444832 81445051 + 0 NA intron (ENSMUSG00000118227.1, intron 2 of 3) lincRNA-intron (ENSMUSG00000118227.1, intron 2 of 2) 12958 ENSMUSG00000118227.1 ENSMUSG00000118227 ENSMUST00000236435 Gm30288 lincRNA Interval_60596 chr15 75587376 75587654 + 0 NA Intergenic Intergenic -9153 ENSMUSG00000022579.10 ENSMUSG00000022579 ENSMUST00000186934 Gpihbp1 protein_coding Interval_51963 chr14 34302993 34304699 + 0 NA intron (ENSMUSG00000041471.9, intron 1 of 1) protein_coding-intron (ENSMUSG00000041471.9, intron 2 of 10) 6539 ENSMUSG00000041471.9 ENSMUSG00000041471 ENSMUST00000228132 Shld2 protein_coding Interval_20527 chr10 118507387 118508056 + 0 NA intron (ENSMUSG00000112230.2, intron 4 of 4) lincRNA-intron (ENSMUSG00000112230.2, intron 4 of 4) 47631 ENSMUSG00000112230.2 ENSMUSG00000112230 ENSMUST00000220034 Ifngas1 lincRNA Interval_88661 chr2 9129908 9130090 + 0 NA Intergenic Intergenic -59516 ENSMUSG00000085580.1 ENSMUSG00000085580 ENSMUST00000132414 1700061F12Rik lincRNA Interval_48746 chr13 102697528 102699682 + 0 NA intron (ENSMUSG00000021624.9, intron 1 of 1) protein_coding-intron (ENSMUSG00000021624.9, intron 1 of 2) 4994 ENSMUSG00000021624.9 ENSMUSG00000021624 ENSMUST00000172138 Cd180 protein_coding Interval_164444 chr9 37072486 37073139 + 0 NA intron (ENSMUSG00000035934.16, intron 2 of 4) protein_coding-intron (ENSMUSG00000035934.16, intron 2 of 12) -45844 ENSMUSG00000110722.1 ENSMUSG00000110722 ENSMUST00000215174 Gm48716 antisense Interval_144295 chr7 24348945 24349494 + 0 NA promoter-TSS (ENSMUSG00000030484.5) protein_coding-promoter-TSS (ENSMUSG00000030484.5) 23 ENSMUSG00000030484.5 ENSMUSG00000030484 ENSMUST00000032683 Lypd5 protein_coding Interval_37495 chr12 69360785 69362624 + 0 NA promoter-TSS (ENSMUSG00000099250.1) misc_RNA-promoter-TSS (ENSMUSG00000099250.1) -223 ENSMUSG00000099250.1 ENSMUSG00000099250 ENSMUST00000175032 Rn7s2 misc_RNA Interval_9045 chr1 153269085 153271437 + 0 NA intron (ENSMUSG00000026478.14, intron 1 of 27) protein_coding-intron (ENSMUSG00000026478.14, intron 1 of 27) 16929 ENSMUSG00000103818.1 ENSMUSG00000103818 ENSMUST00000194884 Gm38009 TEC Interval_138122 chr6 85316111 85316617 + 0 NA intron (ENSMUSG00000033720.12, intron 2 of 3) protein_coding-intron (ENSMUSG00000033720.12, intron 2 of 13) 17058 ENSMUSG00000033720.12 ENSMUSG00000033720 ENSMUST00000203035 Sfxn5 protein_coding Interval_155825 chr8 39599333 39599712 + 0 NA intron (ENSMUSG00000025044.16, intron 8 of 9) protein_coding-intron (ENSMUSG00000025044.16, intron 8 of 9) 43149 ENSMUSG00000025044.16 ENSMUSG00000025044 ENSMUST00000210589 Msr1 protein_coding Interval_144983 chr7 29266233 29267780 + 0 NA intron (ENSMUSG00000074227.12, intron 1 of 6) protein_coding-intron (ENSMUSG00000074227.12, intron 1 of 6) -1816 ENSMUSG00000074227.12 ENSMUSG00000074227 ENSMUST00000208585 Spint2 protein_coding Interval_75045 chr17 62198665 62198892 + 0 NA Intergenic Intergenic 237279 ENSMUSG00000117066.1 ENSMUSG00000117066 ENSMUST00000232942 Gm49860 lincRNA Interval_146022 chr7 43261724 43261917 + 0 NA Intergenic Intergenic 47781 ENSMUSG00000074887.4 ENSMUSG00000074887 ENSMUST00000163106 EU599041 lincRNA Interval_109878 chr3 149330068 149331390 + 0 NA intron (ENSMUSG00000106515.4, intron 1 of 1) lincRNA-intron (ENSMUSG00000106515.4, intron 2 of 3) 10279 ENSMUSG00000089269.1 ENSMUSG00000089269 ENSMUST00000158644 Gm26468 snRNA Interval_55283 chr14 80184887 80185534 + 0 NA Intergenic Intergenic -29720 ENSMUSG00000115334.1 ENSMUSG00000115334 ENSMUST00000226677 Gm17923 processed_pseudogene Interval_124620 chr5 52487969 52488265 + 0 NA Intergenic Intergenic 46958 ENSMUSG00000106380.1 ENSMUSG00000106380 ENSMUST00000196113 Gm3519 antisense Interval_55555 chr14 91831854 91832575 + 0 NA Intergenic Intergenic 155766 ENSMUSG00000115171.1 ENSMUSG00000115171 ENSMUST00000227750 Gm48943 unprocessed_pseudogene Interval_123365 chr5 31814926 31815331 + 0 NA intron (ENSMUSG00000052139.18, intron 6 of 6) protein_coding-intron (ENSMUSG00000052139.18, intron 6 of 13) -54918 ENSMUSG00000088514.1 ENSMUSG00000088514 ENSMUST00000157889 Gm24436 misc_RNA Interval_13797 chr10 22582895 22583836 + 0 NA Intergenic Intergenic -65643 ENSMUSG00000037490.5 ENSMUSG00000037490 ENSMUST00000159174 Slc2a12 protein_coding Interval_28598 chr11 77056585 77056939 + 0 NA intron (ENSMUSG00000037958.13, intron 2 of 2) protein_coding-intron (ENSMUSG00000037958.13, intron 2 of 6) 3815 ENSMUSG00000077639.1 ENSMUSG00000077639 ENSMUST00000104451 Gm22772 snoRNA Interval_81981 chr18 66806288 66806579 + 0 NA Intergenic Intergenic 45301 ENSMUSG00000117968.1 ENSMUSG00000117968 ENSMUST00000237489 Gm50162 lincRNA Interval_158507 chr8 84147278 84148620 + 0 NA promoter-TSS (ENSMUSG00000036686.16) protein_coding-promoter-TSS (ENSMUSG00000036686.16) -76 ENSMUSG00000008129.14 ENSMUSG00000008129 ENSMUST00000093375 4930432K21Rik protein_coding Interval_140253 chr6 115813739 115814495 + 0 NA intron (ENSMUSG00000030321.15, intron 7 of 8) protein_coding-intron (ENSMUSG00000030321.15, intron 7 of 8) -5769 ENSMUSG00000057841.5 ENSMUSG00000057841 ENSMUST00000203816 Rpl32 protein_coding Interval_107080 chr3 103378055 103380258 + 0 NA Intergenic Intergenic -13777 ENSMUSG00000089029.1 ENSMUSG00000089029 ENSMUST00000158404 Gm25009 snoRNA Interval_9452 chr1 157286478 157286902 + 0 NA exon (ENSMUSG00000070565.11, exon 3 of 3) protein_coding-exon (ENSMUSG00000070565.11, exon 3 of 3) -55499 ENSMUSG00000070565.11 ENSMUSG00000070565 ENSMUST00000143080 Rasal2 protein_coding Interval_160693 chr8 111642942 111644201 + 0 NA promoter-TSS (ENSMUSG00000055835.10) protein_coding-promoter-TSS (ENSMUSG00000055835.10) 91 ENSMUSG00000055835.10 ENSMUSG00000055835 ENSMUST00000211926 Zfp1 protein_coding Interval_76 GL456216.1 15690 17472 + 0 NA NA NA NA NA Interval_85295 chr19 24467730 24468168 + 0 NA intron (ENSMUSG00000024867.14, intron 1 of 3) protein_coding-intron (ENSMUSG00000024867.14, intron 1 of 14) 9407 ENSMUSG00000074922.1 ENSMUSG00000074922 ENSMUST00000099556 Fam122a protein_coding Interval_111449 chr4 21732978 21733412 + 0 NA TTS (ENSMUSG00000028252.20) protein_coding-TTS (ENSMUSG00000028252.20) 5437 ENSMUSG00000028252.20 ENSMUSG00000028252 ENSMUST00000133712 Ccnc protein_coding Interval_130862 chr5 132707252 132708253 + 0 NA Intergenic Intergenic -88401 ENSMUSG00000103500.1 ENSMUSG00000103500 ENSMUST00000192042 Gm38373 TEC Interval_73352 chr17 36487347 36488911 + 0 NA Intergenic Intergenic -12231 ENSMUSG00000092290.1 ENSMUSG00000092290 ENSMUST00000174686 Gm20452 unprocessed_pseudogene Interval_157542 chr8 71305586 71306110 + 0 NA intron (ENSMUSG00000004677.17, intron 2 of 39) protein_coding-intron (ENSMUSG00000004677.17, intron 2 of 39) 33134 ENSMUSG00000004677.17 ENSMUSG00000004677 ENSMUST00000212412 Myo9b protein_coding Interval_110415 chr3 157911954 157912137 + 0 NA intron (ENSMUSG00000028179.12, intron 5 of 11) protein_coding-intron (ENSMUSG00000028179.12, intron 5 of 11) -6320 ENSMUSG00000028179.12 ENSMUSG00000028179 ENSMUST00000125028 Cth protein_coding Interval_164239 chr9 33728030 33728235 + 0 NA promoter-TSS (ENSMUSG00000079884.6) processed_pseudogene-promoter-TSS (ENSMUSG00000079884.6) -115 ENSMUSG00000079884.6 ENSMUSG00000079884 ENSMUST00000182663 Gm10698 processed_pseudogene Interval_2924 chr1 50881577 50881769 + 0 NA Intergenic Intergenic -18974 ENSMUSG00000026109.14 ENSMUSG00000026109 ENSMUST00000081851 Tmeff2 protein_coding Interval_127834 chr5 108097218 108098566 + 0 NA intron (ENSMUSG00000029267.17, intron 10 of 15) protein_coding-intron (ENSMUSG00000029267.17, intron 9 of 14) 32175 ENSMUSG00000029267.17 ENSMUSG00000029267 ENSMUST00000129921 Mtf2 protein_coding Interval_97468 chr2 136872299 136872537 + 0 NA Intergenic Intergenic 13261 ENSMUSG00000116563.1 ENSMUSG00000116563 ENSMUST00000231720 AL731706.2 protein_coding Interval_125855 chr5 75070211 75071211 + 0 NA Intergenic Intergenic -4891 ENSMUSG00000035946.7 ENSMUSG00000035946 ENSMUST00000160104 Gsx2 protein_coding Interval_90896 chr2 33316678 33317130 + 0 NA intron (ENSMUSG00000038831.16, intron 3 of 16) protein_coding-intron (ENSMUSG00000038831.16, intron 3 of 16) -6267 ENSMUSG00000082844.1 ENSMUSG00000082844 ENSMUST00000120467 Gm13537 processed_pseudogene Interval_151019 chr7 117813160 117813955 + 0 NA Intergenic Intergenic 36763 ENSMUSG00000088116.1 ENSMUSG00000088116 ENSMUST00000157491 Gm24063 miRNA Interval_70084 chr17 5201235 5202574 + 0 NA intron (ENSMUSG00000069729.14, intron 4 of 19) protein_coding-intron (ENSMUSG00000069729.14, intron 4 of 18) -89794 ENSMUSG00000081783.2 ENSMUSG00000081783 ENSMUST00000122283 Gm15599 processed_pseudogene Interval_103381 chr3 41057404 41057779 + 0 NA Intergenic Intergenic 13079 ENSMUSG00000049940.7 ENSMUSG00000049940 ENSMUST00000124636 Pgrmc2 protein_coding Interval_76952 chr17 85135912 85137435 + 0 NA intron (ENSMUSG00000071037.6, intron 3 of 10) protein_coding-intron (ENSMUSG00000071037.6, intron 3 of 10) 46067 ENSMUSG00000071037.6 ENSMUSG00000071037 ENSMUST00000234501 Camkmt protein_coding Interval_21839 chr11 4670034 4670725 + 0 NA exon (ENSMUSG00000020412.16, exon 13 of 20) protein_coding-exon (ENSMUSG00000020412.16, exon 13 of 20) 32632 ENSMUSG00000020412.16 ENSMUSG00000020412 ENSMUST00000109930 Ascc2 protein_coding Interval_36276 chr12 40568563 40569114 + 0 NA intron (ENSMUSG00000035954.10, intron 1 of 5) protein_coding-intron (ENSMUSG00000035954.10, intron 1 of 52) 122755 ENSMUSG00000035954.10 ENSMUSG00000035954 ENSMUST00000220850 Dock4 protein_coding Interval_106500 chr3 96714207 96714477 + 0 NA exon (ENSMUSG00000028099.8, exon 12 of 15) protein_coding-exon (ENSMUSG00000028099.8, exon 12 of 15) -5795 ENSMUSG00000028100.11 ENSMUSG00000028100 ENSMUST00000029742 Nudt17 protein_coding Interval_108696 chr3 130364396 130365049 + 0 NA intron (ENSMUSG00000058897.18, intron 2 of 37) protein_coding-intron (ENSMUSG00000058897.18, intron 2 of 37) 159257 ENSMUSG00000065788.1 ENSMUSG00000065788 ENSMUST00000083854 Gm22682 snRNA Interval_74654 chr17 54420136 54420778 + 0 NA exon (ENSMUSG00000090704.2, exon 1 of 1) processed_pseudogene-exon (ENSMUSG00000090704.2, exon 1 of 1) 777 ENSMUSG00000090704.2 ENSMUSG00000090704 ENSMUST00000166597 Trp53-ps processed_pseudogene Interval_35389 chr12 21260686 21261070 + 0 NA intron (ENSMUSG00000052632.16, intron 24 of 27) protein_coding-intron (ENSMUSG00000052632.16, intron 23 of 26) -4926 ENSMUSG00000092373.1 ENSMUSG00000092373 ENSMUST00000173157 Gm20535 processed_transcript Interval_127769 chr5 107610772 107611665 + 0 NA intron (ENSMUSG00000033773.14, intron 6 of 11) protein_coding-intron (ENSMUSG00000033773.14, intron 6 of 12) 13257 ENSMUSG00000033773.14 ENSMUSG00000033773 ENSMUST00000129483 Rpap2 protein_coding Interval_147972 chr7 75982902 75984352 + 0 NA Intergenic Intergenic -17197 ENSMUSG00000108495.1 ENSMUSG00000108495 ENSMUST00000206543 Gm45139 TEC Interval_153766 chr8 7894788 7895022 + 0 NA Intergenic Intergenic 37029 ENSMUSG00000099890.2 ENSMUSG00000099890 ENSMUST00000192596 Gm28262 processed_transcript Interval_47722 chr13 91795005 91796343 + 0 NA TTS (ENSMUSG00000021621.15) protein_coding-TTS (ENSMUSG00000021621.15) 5321 ENSMUSG00000021621.15 ENSMUSG00000021621 ENSMUST00000179368 Zcchc9 protein_coding Interval_86807 chr19 43990305 43990802 + 0 NA Intergenic Intergenic -21860 ENSMUSG00000025196.4 ENSMUSG00000025196 ENSMUST00000131882 Cpn1 protein_coding Interval_104328 chr3 63470614 63470972 + 0 NA Intergenic Intergenic 13086 ENSMUSG00000103476.1 ENSMUSG00000103476 ENSMUST00000192926 Strit1 protein_coding Interval_1605 chr1 29703289 29704003 + 0 NA Intergenic Intergenic -109508 ENSMUSG00000118548.1 ENSMUSG00000118548 ENSMUST00000239107 AC125120.1 processed_pseudogene Interval_65732 chr16 26234251 26234612 + 0 NA Intergenic Intergenic 126363 ENSMUSG00000022512.3 ENSMUSG00000022512 ENSMUST00000232215 Cldn1 protein_coding Interval_117903 chr4 126967142 126968580 + 0 NA promoter-TSS (ENSMUSG00000042446.16) protein_coding-promoter-TSS (ENSMUSG00000042446.16) 38 ENSMUSG00000042446.16 ENSMUSG00000042446 ENSMUST00000123597 Zmym4 protein_coding Interval_86923 chr19 44900880 44901321 + 0 NA Intergenic Intergenic -41752 ENSMUSG00000036097.8 ENSMUSG00000036097 ENSMUST00000237505 Slf2 protein_coding Interval_128543 chr5 113933607 113934189 + 0 NA Intergenic Intergenic -3764 ENSMUSG00000105664.1 ENSMUSG00000105664 ENSMUST00000197573 Gm42797 lincRNA Interval_156719 chr8 57576356 57576633 + 0 NA intron (ENSMUSG00000031608.13, intron 2 of 5) protein_coding-intron (ENSMUSG00000031608.13, intron 2 of 11) 26195 ENSMUSG00000070025.8 ENSMUSG00000070025 ENSMUST00000145057 Gm10284 processed_pseudogene Interval_152362 chr7 132399213 132399824 + 0 NA intron (ENSMUSG00000030849.18, intron 2 of 6) protein_coding-intron (ENSMUSG00000030849.18, intron 2 of 6) -20512 ENSMUSG00000108870.1 ENSMUSG00000108870 ENSMUST00000207259 Gm44893 lincRNA Interval_22166 chr11 6740622 6741043 + 0 NA Intergenic Intergenic -20795 ENSMUSG00000086808.1 ENSMUSG00000086808 ENSMUST00000139769 Gm11981 processed_transcript Interval_122172 chr5 18688327 18689176 + 0 NA Intergenic Intergenic -125453 ENSMUSG00000105930.1 ENSMUSG00000105930 ENSMUST00000198410 Gm17889 processed_pseudogene Interval_118212 chr4 129558368 129558668 + 0 NA promoter-TSS (ENSMUSG00000000409.14) protein_coding-promoter-TSS (ENSMUSG00000000409.14) -146 ENSMUSG00000000409.14 ENSMUSG00000000409 ENSMUST00000134336 Lck protein_coding Interval_124391 chr5 45463432 45463655 + 0 NA intron (ENSMUSG00000049530.6, intron 2 of 2) protein_coding-intron (ENSMUSG00000049530.6, intron 2 of 2) 9792 ENSMUSG00000049530.6 ENSMUSG00000049530 ENSMUST00000053250 Clrn2 protein_coding Interval_63664 chr15 102656520 102656873 + 0 NA promoter-TSS (ENSMUSG00000116056.1) lincRNA-promoter-TSS (ENSMUSG00000116056.1) -872 ENSMUSG00000116056.1 ENSMUSG00000116056 ENSMUST00000229601 Gm4544 lincRNA Interval_123174 chr5 30364509 30364753 + 0 NA intron (ENSMUSG00000073102.7, intron 16 of 16) protein_coding-intron (ENSMUSG00000073102.7, intron 16 of 16) -1415 ENSMUSG00000106311.1 ENSMUSG00000106311 ENSMUST00000200001 Gm43755 sense_intronic Interval_172922 chrX 56045201 56045603 + 0 NA Intergenic Intergenic -25262 ENSMUSG00000080383.1 ENSMUSG00000080383 ENSMUST00000116733 Gm22103 miRNA Interval_10184 chr1 166843460 166844101 + 0 NA Intergenic Intergenic -44941 ENSMUSG00000103073.1 ENSMUSG00000103073 ENSMUST00000195591 Gm37904 processed_pseudogene Interval_96060 chr2 119512340 119512778 + 0 NA Intergenic Intergenic -3330 ENSMUSG00000082369.1 ENSMUSG00000082369 ENSMUST00000119645 Gm14208 processed_pseudogene Interval_114527 chr4 82287880 82288419 + 0 NA Intergenic Intergenic -151261 ENSMUSG00000084595.1 ENSMUSG00000084595 ENSMUST00000122646 n-R5s188 rRNA Interval_172449 chrX 20425040 20426442 + 0 NA promoter-TSS (ENSMUSG00000037315.15) protein_coding-promoter-TSS (ENSMUSG00000037315.15) 24 ENSMUSG00000037315.15 ENSMUSG00000037315 ENSMUST00000043693 Jade3 protein_coding Interval_141379 chr6 127835293 127836172 + 0 NA Intergenic Intergenic -13489 ENSMUSG00000088177.1 ENSMUSG00000088177 ENSMUST00000157552 Gm23098 misc_RNA Interval_156407 chr8 47961000 47961213 + 0 NA intron (ENSMUSG00000031563.8, intron 1 of 22) protein_coding-intron (ENSMUSG00000031563.8, intron 1 of 22) 29818 ENSMUSG00000031563.8 ENSMUSG00000031563 ENSMUST00000212282 Wwc2 protein_coding Interval_135811 chr6 47494500 47495233 + 0 NA intron (ENSMUSG00000029686.15, intron 2 of 3) protein_coding-intron (ENSMUSG00000029686.15, intron 2 of 21) -24830 ENSMUSG00000029686.15 ENSMUSG00000029686 ENSMUST00000149531 Cul1 protein_coding Interval_115798 chr4 104586928 104587838 + 0 NA intron (ENSMUSG00000028519.16, intron 1 of 5) protein_coding-intron (ENSMUSG00000028519.16, intron 1 of 5) -17913 ENSMUSG00000028519.16 ENSMUSG00000028519 ENSMUST00000149672 Dab1 protein_coding Interval_11035 chr1 178609313 178609808 + 0 NA intron (ENSMUSG00000026494.12, intron 2 of 3) protein_coding-intron (ENSMUSG00000026494.12, intron 2 of 14) -27345 ENSMUSG00000064967.1 ENSMUSG00000064967 ENSMUST00000083033 Gm24405 snRNA Interval_59777 chr15 59188205 59189013 + 0 NA Intergenic Intergenic -22299 ENSMUSG00000025922.9 ENSMUSG00000025922 ENSMUST00000027054 Rpl7-ps8 processed_pseudogene Interval_105447 chr3 86635595 86636214 + 0 NA intron (ENSMUSG00000028080.16, intron 5 of 17) protein_coding-intron (ENSMUSG00000028080.16, intron 44 of 56) 36264 ENSMUSG00000094392.1 ENSMUSG00000094392 ENSMUST00000119949 Gm3788 processed_pseudogene Interval_136499 chr6 54962955 54965615 + 0 NA intron (ENSMUSG00000038058.14, intron 1 of 11) protein_coding-intron (ENSMUSG00000038058.14, intron 1 of 11) -10366 ENSMUSG00000077501.1 ENSMUSG00000077501 ENSMUST00000104313 Gm24230 snoRNA Interval_61 GL456212.1 114507 115094 + 0 NA NA NA NA NA Interval_120838 chr4 150940107 150940669 + 0 NA intron (ENSMUSG00000028965.13, intron 7 of 7) protein_coding-intron (ENSMUSG00000028965.13, intron 7 of 7) 12389 ENSMUSG00000028965.13 ENSMUSG00000028965 ENSMUST00000126707 Tnfrsf9 protein_coding Interval_14660 chr10 38190500 38191341 + 0 NA Intergenic Intergenic 11467 ENSMUSG00000077576.1 ENSMUSG00000077576 ENSMUST00000104388 Gm24889 snoRNA Interval_126817 chr5 93152495 93152921 + 0 NA intron (ENSMUSG00000058013.11, intron 3 of 9) protein_coding-intron (ENSMUSG00000058013.11, intron 3 of 9) -24262 ENSMUSG00000107019.1 ENSMUSG00000107019 ENSMUST00000202150 Gm43682 TEC Interval_60196 chr15 67326054 67326270 + 0 NA intron (ENSMUSG00000102069.1, intron 5 of 8) lincRNA-intron (ENSMUSG00000102069.1, intron 5 of 8) 99393 ENSMUSG00000102069.1 ENSMUSG00000102069 ENSMUST00000187233 1700012I11Rik lincRNA Interval_31632 chr11 101904969 101905749 + 0 NA Intergenic Intergenic -10985 ENSMUSG00000001493.9 ENSMUSG00000001493 ENSMUST00000057054 Meox1 protein_coding Interval_26196 chr11 55022360 55024592 + 0 NA intron (ENSMUSG00000018340.13, intron 1 of 19) protein_coding-intron (ENSMUSG00000018340.13, intron 1 of 24) 9939 ENSMUSG00000018340.13 ENSMUSG00000018340 ENSMUST00000148298 Anxa6 protein_coding Interval_160665 chr8 111450887 111452355 + 0 NA intron (ENSMUSG00000031959.15, intron 26 of 26) protein_coding-intron (ENSMUSG00000031959.15, intron 26 of 26) 1421 ENSMUSG00000098410.1 ENSMUSG00000098410 ENSMUST00000184608 Mir1957b miRNA Interval_32070 chr11 105055746 105056041 + 0 NA intron (ENSMUSG00000040838.10, intron 164 of 187) protein_coding-intron (ENSMUSG00000040838.10, intron 164 of 187) -21819 ENSMUSG00000084120.1 ENSMUSG00000084120 ENSMUST00000118579 Gm11624 processed_pseudogene Interval_98264 chr2 150646428 150646926 + 0 NA intron (ENSMUSG00000027452.11, intron 2 of 4) protein_coding-intron (ENSMUSG00000027452.11, intron 2 of 13) -8562 ENSMUSG00000027452.11 ENSMUSG00000027452 ENSMUST00000141785 Acss1 protein_coding Interval_8891 chr1 151849698 151850344 + 0 NA Intergenic Intergenic 4934 ENSMUSG00000084557.1 ENSMUSG00000084557 ENSMUST00000122608 Gm25279 snRNA Interval_54639 chr14 72592106 72593310 + 0 NA intron (ENSMUSG00000033487.14, intron 2 of 23) protein_coding-intron (ENSMUSG00000033487.14, intron 4 of 25) 2956 ENSMUSG00000090216.1 ENSMUSG00000090216 ENSMUST00000160445 Gm16549 antisense Interval_101375 chr2 180889588 180891690 + 0 NA promoter-TSS (ENSMUSG00000086166.1) lincRNA-promoter-TSS (ENSMUSG00000086166.1) -979 ENSMUSG00000086166.1 ENSMUSG00000086166 ENSMUST00000137629 Gm14342 lincRNA Interval_97364 chr2 135471880 135472176 + 0 NA intron (ENSMUSG00000051177.16, intron 32 of 32) protein_coding-intron (ENSMUSG00000051177.16, intron 31 of 31) 111556 ENSMUSG00000085631.1 ENSMUSG00000085631 ENSMUST00000129868 9630028H03Rik antisense Interval_91151 chr2 35487244 35488221 + 0 NA Intergenic Intergenic 3787 ENSMUSG00000081421.1 ENSMUSG00000081421 ENSMUST00000121664 Gm13445 processed_pseudogene Interval_90985 chr2 33923320 33923704 + 0 NA Intergenic Intergenic 18633 ENSMUSG00000085987.2 ENSMUSG00000085987 ENSMUST00000134271 Gm13403 lincRNA Interval_165501 chr9 48778063 48778938 + 0 NA intron (ENSMUSG00000066687.5, intron 2 of 6) protein_coding-intron (ENSMUSG00000066687.5, intron 2 of 6) 57722 ENSMUSG00000066687.5 ENSMUSG00000066687 ENSMUST00000216150 Zbtb16 protein_coding Interval_92422 chr2 59647135 59647362 + 0 NA TTS (ENSMUSG00000035168.16) protein_coding-TTS (ENSMUSG00000035168.16) -82564 ENSMUSG00000081157.1 ENSMUSG00000081157 ENSMUST00000118837 Gm13552 processed_pseudogene Interval_103743 chr3 52277736 52278322 + 0 NA intron (ENSMUSG00000044167.6, intron 1 of 2) protein_coding-intron (ENSMUSG00000044167.6, intron 1 of 2) -4212 ENSMUSG00000102844.1 ENSMUSG00000102844 ENSMUST00000193915 Gm38034 TEC Interval_51059 chr14 21856665 21857395 + 0 NA TTS (ENSMUSG00000090564.9) antisense-TTS (ENSMUSG00000090564.9) -8343 ENSMUSG00000021773.11 ENSMUSG00000021773 ENSMUST00000177527 Comtd1 protein_coding Interval_61979 chr15 85613063 85613636 + 0 NA Intergenic Intergenic -32734 ENSMUSG00000116004.1 ENSMUSG00000116004 ENSMUST00000230234 Gm49539 lincRNA Interval_109312 chr3 138849952 138850512 + 0 NA intron (ENSMUSG00000028152.10, intron 1 of 7) protein_coding-intron (ENSMUSG00000028152.10, intron 1 of 7) -21070 ENSMUSG00000086123.3 ENSMUSG00000086123 ENSMUST00000153140 Gm16060 processed_pseudogene Interval_116172 chr4 108362783 108364040 + 0 NA Intergenic Intergenic 19938 ENSMUSG00000059816.5 ENSMUSG00000059816 ENSMUST00000053157 Shisal2a protein_coding Interval_33411 chr11 116424930 116425315 + 0 NA Intergenic Intergenic -9387 ENSMUSG00000050628.6 ENSMUSG00000050628 ENSMUST00000144310 Ubald2 protein_coding Interval_98759 chr2 154765084 154765432 + 0 NA Intergenic Intergenic 4772 ENSMUSG00000098640.1 ENSMUSG00000098640 ENSMUST00000185009 Gm14214 protein_coding Interval_159218 chr8 91845079 91845654 + 0 NA Intergenic Intergenic -20505 ENSMUSG00000099664.1 ENSMUSG00000099664 ENSMUST00000191594 Gm28511 lincRNA Interval_65397 chr16 22123507 22124086 + 0 NA intron (ENSMUSG00000033581.17, intron 1 of 4) protein_coding-intron (ENSMUSG00000033581.17, intron 2 of 15) -2560 ENSMUSG00000033581.17 ENSMUSG00000033581 ENSMUST00000127696 Igf2bp2 protein_coding Interval_173845 chrX 105915786 105916010 + 0 NA intron (ENSMUSG00000031229.16, intron 1 of 2) protein_coding-intron (ENSMUSG00000031229.16, intron 1 of 5) -40593 ENSMUSG00000031229.16 ENSMUSG00000031229 ENSMUST00000126345 Atrx protein_coding Interval_13559 chr10 19604610 19605102 + 0 NA intron (ENSMUSG00000020009.13, intron 4 of 6) protein_coding-intron (ENSMUSG00000020009.13, intron 4 of 6) 12794 ENSMUSG00000020009.13 ENSMUSG00000020009 ENSMUST00000168074 Ifngr1 protein_coding Interval_6474 chr1 111144077 111145168 + 0 NA Intergenic Intergenic -167038 ENSMUSG00000047216.8 ENSMUSG00000047216 ENSMUST00000187555 Cdh19 protein_coding Interval_24401 chr11 33006975 33007645 + 0 NA Intergenic Intergenic -23011 ENSMUSG00000077836.2 ENSMUSG00000077836 ENSMUST00000104646 Gm26052 miRNA Interval_148940 chr7 90203943 90204360 + 0 NA TTS (ENSMUSG00000109279.1) TEC-TTS (ENSMUSG00000109279.1) 2873 ENSMUSG00000109279.1 ENSMUSG00000109279 ENSMUST00000207847 Gm45220 TEC Interval_42245 chr13 10797399 10797724 + 0 NA TTS (ENSMUSG00000097009.2) antisense-TTS (ENSMUSG00000097009.2) 97400 ENSMUSG00000114134.1 ENSMUSG00000114134 ENSMUST00000221855 Gm47408 lincRNA Interval_97477 chr2 137092194 137093025 + 0 NA exon (ENSMUSG00000027276.7, exon 10 of 26) protein_coding-exon (ENSMUSG00000027276.7, exon 10 of 26) -6660 ENSMUSG00000027276.7 ENSMUSG00000027276 ENSMUST00000133640 Jag1 protein_coding Interval_101186 chr2 179142066 179142428 + 0 NA Intergenic Intergenic -35178 ENSMUSG00000061897.5 ENSMUSG00000061897 ENSMUST00000118761 Gm14292 processed_pseudogene Interval_155856 chr8 40307298 40308828 + 0 NA promoter-TSS (ENSMUSG00000098431.1) miRNA-promoter-TSS (ENSMUSG00000098431.1) -134 ENSMUSG00000098431.1 ENSMUSG00000098431 ENSMUST00000183849 Mir7666 miRNA Interval_54643 chr14 72640811 72642069 + 0 NA intron (ENSMUSG00000033487.14, intron 3 of 3) protein_coding-intron (ENSMUSG00000033487.14, intron 3 of 25) 51688 ENSMUSG00000090216.1 ENSMUSG00000090216 ENSMUST00000160445 Gm16549 antisense Interval_11357 chr1 181187043 181187918 + 0 NA TTS (ENSMUSG00000038733.14) protein_coding-TTS (ENSMUSG00000038733.14) 24521 ENSMUSG00000038733.14 ENSMUSG00000038733 ENSMUST00000161531 Wdr26 protein_coding Interval_66021 chr16 31000830 31001604 + 0 NA intron (ENSMUSG00000047434.14, intron 3 of 3) protein_coding-intron (ENSMUSG00000047434.14, intron 3 of 3) -27699 ENSMUSG00000087605.1 ENSMUSG00000087605 ENSMUST00000123905 Gm15742 sense_intronic Interval_168354 chr9 79442929 79443151 + 0 NA TTS (ENSMUSG00000111765.1) lincRNA-TTS (ENSMUSG00000111765.1) -47571 ENSMUSG00000111560.1 ENSMUSG00000111560 ENSMUST00000215133 Gm35262 processed_pseudogene Interval_59322 chr15 51677414 51677711 + 0 NA Intergenic Intergenic -47927 ENSMUSG00000115563.1 ENSMUSG00000115563 ENSMUST00000227000 Gm34562 lincRNA Interval_27767 chr11 69863701 69864427 + 0 NA Intergenic Intergenic -8462 ENSMUSG00000001583.13 ENSMUSG00000001583 ENSMUST00000125571 Tnk1 protein_coding Interval_99610 chr2 163534136 163535626 + 0 NA intron (ENSMUSG00000017950.16, intron 1 of 2) antisense-intron (ENSMUSG00000046840.16, intron 1 of 2) 6839 ENSMUSG00000046840.16 ENSMUSG00000046840 ENSMUST00000125811 Hnf4aos antisense Interval_107231 chr3 104779921 104782485 + 0 NA exon (ENSMUSG00000002228.7, exon 1 of 10) protein_coding-exon (ENSMUSG00000002228.7, exon 1 of 10) 637 ENSMUSG00000055865.8 ENSMUSG00000055865 ENSMUST00000162644 Tafa3 protein_coding Interval_129052 chr5 117100885 117101694 + 0 NA exon (ENSMUSG00000066900.11, exon 1 of 3) protein_coding-exon (ENSMUSG00000066900.11, exon 1 of 3) 3112 ENSMUSG00000066900.11 ENSMUSG00000066900 ENSMUST00000201287 Suds3 protein_coding Interval_40056 chr12 100907759 100908738 + 0 NA promoter-TSS (ENSMUSG00000047415.12) protein_coding-promoter-TSS (ENSMUSG00000047415.12) -8843 ENSMUSG00000047415.12 ENSMUSG00000047415 ENSMUST00000222453 Gpr68 protein_coding Interval_24007 chr11 29383473 29384153 + 0 NA intron (ENSMUSG00000032740.17, intron 2 of 30) protein_coding-intron (ENSMUSG00000032740.17, intron 2 of 31) 9465 ENSMUSG00000032740.17 ENSMUSG00000032740 ENSMUST00000144450 Ccdc88a protein_coding Interval_142448 chr6 142386738 142387841 + 0 NA promoter-TSS (ENSMUSG00000030243.16) protein_coding-promoter-TSS (ENSMUSG00000030243.16) 36 ENSMUSG00000030245.10 ENSMUSG00000030245 ENSMUST00000146508 Golt1b protein_coding Interval_173310 chrX 77795204 77797075 + 0 NA promoter-TSS (ENSMUSG00000035725.13) protein_coding-promoter-TSS (ENSMUSG00000035725.13) -167 ENSMUSG00000035725.13 ENSMUSG00000035725 ENSMUST00000114044 Prkx protein_coding Interval_129002 chr5 116562223 116562474 + 0 NA intron (ENSMUSG00000063919.11, intron 1 of 12) protein_coding-intron (ENSMUSG00000063919.11, intron 1 of 12) 11147 ENSMUSG00000106914.1 ENSMUSG00000106914 ENSMUST00000201262 Gm42854 sense_intronic Interval_43612 chr13 34109043 34110455 + 0 NA intron (ENSMUSG00000113591.1, intron 1 of 4) processed_transcript-intron (ENSMUSG00000113591.1, intron 1 of 4) 3523 ENSMUSG00000113591.1 ENSMUSG00000113591 ENSMUST00000222745 4930447K03Rik processed_transcript Interval_57805 chr15 21083006 21083319 + 0 NA intron (ENSMUSG00000040452.9, intron 3 of 3) protein_coding-intron (ENSMUSG00000040452.9, intron 3 of 3) -26963 ENSMUSG00000040452.9 ENSMUSG00000040452 ENSMUST00000075132 Cdh12 protein_coding Interval_30855 chr11 96899316 96900284 + 0 NA Intergenic Intergenic 16307 ENSMUSG00000018669.14 ENSMUSG00000018669 ENSMUST00000130767 Cdk5rap3 protein_coding Interval_167743 chr9 72447857 72450923 + 0 NA TTS (ENSMUSG00000032221.14) protein_coding-TTS (ENSMUSG00000032221.14) -7611 ENSMUSG00000098778.1 ENSMUSG00000098778 ENSMUST00000185191 Gm27231 antisense Interval_156326 chr8 47395408 47395627 + 0 NA intron (ENSMUSG00000038143.16, intron 7 of 7) protein_coding-intron (ENSMUSG00000038143.16, intron 7 of 7) 18320 ENSMUSG00000038143.16 ENSMUSG00000038143 ENSMUST00000181417 Stox2 protein_coding Interval_113175 chr4 48898466 48898695 + 0 NA promoter-TSS (ENSMUSG00000084787.1) lincRNA-promoter-TSS (ENSMUSG00000084787.1) -13 ENSMUSG00000084787.1 ENSMUSG00000084787 ENSMUST00000131099 Gm12436 lincRNA Interval_154168 chr8 13189674 13190058 + 0 NA promoter-TSS (ENSMUSG00000088054.1) miRNA-promoter-TSS (ENSMUSG00000088054.1) -768 ENSMUSG00000088054.1 ENSMUSG00000088054 ENSMUST00000157429 Mir1968 miRNA Interval_141366 chr6 127708212 127708828 + 0 NA intron (ENSMUSG00000030350.8, intron 6 of 9) protein_coding-intron (ENSMUSG00000030350.8, intron 6 of 9) -55228 ENSMUSG00000106833.1 ENSMUSG00000106833 ENSMUST00000200687 Gm42739 processed_pseudogene Interval_94122 chr2 84504364 84504945 + 0 NA intron (ENSMUSG00000087362.7, intron 1 of 2) lincRNA-intron (ENSMUSG00000087362.7, intron 1 of 2) 26668 ENSMUSG00000087362.7 ENSMUSG00000087362 ENSMUST00000139492 Gm13710 lincRNA Interval_58288 chr15 31673069 31674018 + 0 NA Intergenic Intergenic -17977 ENSMUSG00000115188.1 ENSMUSG00000115188 ENSMUST00000227734 Gm46522 processed_pseudogene Interval_32406 chr11 107379110 107379938 + 0 NA intron (ENSMUSG00000040430.18, intron 1 of 9) protein_coding-intron (ENSMUSG00000040430.18, intron 1 of 9) -7459 ENSMUSG00000087683.1 ENSMUSG00000087683 ENSMUST00000129139 Gm11712 antisense Interval_77524 chr17 90787198 90788903 + 0 NA intron (ENSMUSG00000024109.18, intron 1 of 12) protein_coding-intron (ENSMUSG00000024109.18, intron 4 of 20) 5956 ENSMUSG00000092549.1 ENSMUSG00000092549 ENSMUST00000173765 Gm20491 processed_pseudogene Interval_133485 chr6 5589437 5590097 + 0 NA Intergenic Intergenic -93506 ENSMUSG00000019577.6 ENSMUSG00000019577 ENSMUST00000134068 Pdk4 protein_coding Interval_88080 chr19 58900517 58900838 + 0 NA intron (ENSMUSG00000025092.7, intron 2 of 6) protein_coding-intron (ENSMUSG00000025092.7, intron 2 of 6) 11082 ENSMUSG00000092813.1 ENSMUSG00000092813 ENSMUST00000175072 Mir3086 miRNA Interval_61111 chr15 79298110 79298495 + 0 NA intron (ENSMUSG00000042632.17, intron 4 of 6) protein_coding-intron (ENSMUSG00000042632.17, intron 10 of 15) -10065 ENSMUSG00000042632.17 ENSMUSG00000042632 ENSMUST00000172936 Pla2g6 protein_coding Interval_32610 chr11 109126334 109126942 + 0 NA Intergenic Intergenic 17731 ENSMUSG00000078605.2 ENSMUSG00000078605 ENSMUST00000106710 E030025P04Rik protein_coding Interval_117857 chr4 126665196 126665983 + 0 NA exon (ENSMUSG00000081210.1, exon 1 of 1) processed_pseudogene-exon (ENSMUSG00000081210.1, exon 1 of 1) 335 ENSMUSG00000081210.1 ENSMUSG00000081210 ENSMUST00000120203 Gm12933 processed_pseudogene Interval_63112 chr15 99139416 99140230 + 0 NA intron (ENSMUSG00000051934.5, intron 1 of 5) protein_coding-intron (ENSMUSG00000051934.5, intron 1 of 12) -6651 ENSMUSG00000088377.1 ENSMUSG00000088377 ENSMUST00000157752 Gm25183 snoRNA Interval_47920 chr13 94387853 94388221 + 0 NA intron (ENSMUSG00000021686.6, intron 1 of 26) protein_coding-intron (ENSMUSG00000021686.6, intron 1 of 26) -29114 ENSMUSG00000042857.3 ENSMUSG00000042857 ENSMUST00000221110 Gm9776 bidirectional_promoter_lncRNA Interval_92013 chr2 52570671 52571931 + 0 NA intron (ENSMUSG00000017412.15, intron 2 of 13) protein_coding-intron (ENSMUSG00000017412.15, intron 2 of 13) 19332 ENSMUSG00000082132.1 ENSMUSG00000082132 ENSMUST00000119519 Gm13541 processed_pseudogene Interval_72705 chr17 31646026 31647411 + 0 NA TTS (ENSMUSG00000061613.13) protein_coding-TTS (ENSMUSG00000061613.13) -1939 ENSMUSG00000118161.1 ENSMUSG00000118161 ENSMUST00000236305 Rps2-ps8 processed_pseudogene Interval_158263 chr8 80693921 80695036 + 0 NA intron (ENSMUSG00000042353.9, intron 7 of 7) protein_coding-intron (ENSMUSG00000042353.9, intron 7 of 7) 16383 ENSMUSG00000031715.14 ENSMUSG00000031715 ENSMUST00000148455 Smarca5 protein_coding Interval_164566 chr9 38840297 38841298 + 0 NA Intergenic Intergenic -3652 ENSMUSG00000062103.5 ENSMUSG00000062103 ENSMUST00000072977 Olfr924 protein_coding Interval_165586 chr9 49927678 49928509 + 0 NA Intergenic Intergenic -26785 ENSMUSG00000111682.1 ENSMUSG00000111682 ENSMUST00000215094 Gm47543 lincRNA Interval_101938 chr3 12514634 12515080 + 0 NA Intergenic Intergenic -116403 ENSMUSG00000104177.1 ENSMUSG00000104177 ENSMUST00000194635 Gm2429 processed_pseudogene Interval_171407 chr9 117805876 117806161 + 0 NA intron (ENSMUSG00000039607.17, intron 1 of 3) protein_coding-intron (ENSMUSG00000039607.17, intron 1 of 3) 66663 ENSMUSG00000039607.17 ENSMUSG00000039607 ENSMUST00000210659 Rbms3 protein_coding Interval_140866 chr6 122463034 122464191 + 0 NA TTS (ENSMUSG00000040649.15) protein_coding-TTS (ENSMUSG00000040649.15) 6708 ENSMUSG00000055093.10 ENSMUSG00000055093 ENSMUST00000119780 Gm8430 processed_pseudogene Interval_60483 chr15 74224522 74226270 + 0 NA Intergenic Intergenic -131063 ENSMUSG00000082585.3 ENSMUSG00000082585 ENSMUST00000120421 Gm15387 processed_pseudogene Interval_36534 chr12 48849480 48849808 + 0 NA Intergenic Intergenic 56400 ENSMUSG00000108639.1 ENSMUSG00000108639 ENSMUST00000205588 AC124542.1 unprocessed_pseudogene Interval_123161 chr5 30201559 30201826 + 0 NA TTS (ENSMUSG00000067642.11) protein_coding-TTS (ENSMUSG00000067642.11) 2895 ENSMUSG00000067642.11 ENSMUSG00000067642 ENSMUST00000135322 Adgrf3 protein_coding Interval_130460 chr5 127830863 127831397 + 0 NA intron (ENSMUSG00000034310.8, intron 5 of 8) protein_coding-intron (ENSMUSG00000034310.8, intron 5 of 8) -46203 ENSMUSG00000061331.5 ENSMUSG00000061331 ENSMUST00000109542 Gm17132 unprocessed_pseudogene Interval_56458 chr14 118907417 118907805 + 0 NA intron (ENSMUSG00000042156.16, intron 6 of 20) protein_coding-intron (ENSMUSG00000042156.16, intron 8 of 21) -17948 ENSMUSG00000042156.16 ENSMUSG00000042156 ENSMUST00000226919 Dzip1 protein_coding Interval_78367 chr18 12199325 12200563 + 0 NA intron (ENSMUSG00000024413.14, intron 14 of 24) protein_coding-intron (ENSMUSG00000024413.14, intron 14 of 24) -5674 ENSMUSG00000024413.14 ENSMUSG00000024413 ENSMUST00000144435 Npc1 protein_coding Interval_92472 chr2 59983968 59984164 + 0 NA intron (ENSMUSG00000026987.16, intron 4 of 5) protein_coding-intron (ENSMUSG00000026987.16, intron 2 of 33) 8278 ENSMUSG00000081236.1 ENSMUSG00000081236 ENSMUST00000120482 Gm13574 processed_pseudogene Interval_10647 chr1 172426525 172427046 + 0 NA Intergenic Intergenic -35796 ENSMUSG00000102278.1 ENSMUSG00000102278 ENSMUST00000193540 Gm37145 TEC Interval_69637 chr16 94770830 94771074 + 0 NA intron (ENSMUSG00000043301.16, intron 3 of 3) protein_coding-intron (ENSMUSG00000043301.16, intron 3 of 4) 49058 ENSMUSG00000116641.1 ENSMUSG00000116641 ENSMUST00000232585 Gm41505 antisense Interval_48686 chr13 101220942 101221257 + 0 NA Intergenic Intergenic -11028 ENSMUSG00000114590.1 ENSMUSG00000114590 ENSMUST00000223648 5930438M14Rik lincRNA Interval_93573 chr2 74591209 74592168 + 0 NA exon (ENSMUSG00000075279.5, exon 1 of 1) processed_pseudogene-exon (ENSMUSG00000075279.5, exon 1 of 1) 221 ENSMUSG00000075279.5 ENSMUSG00000075279 ENSMUST00000173086 Mrpl23-ps1 processed_pseudogene Interval_37168 chr12 59149351 59149788 + 0 NA promoter-TSS (ENSMUSG00000021000.17) protein_coding-promoter-TSS (ENSMUSG00000021000.17) 15497 ENSMUSG00000077505.1 ENSMUSG00000077505 ENSMUST00000104317 Gm24233 snoRNA Interval_55989 chr14 103702405 103703039 + 0 NA exon (ENSMUSG00000055717.13, exon 6 of 7) protein_coding-exon (ENSMUSG00000055717.13, exon 6 of 7) -3280 ENSMUSG00000089707.1 ENSMUSG00000089707 ENSMUST00000160117 Slain1os antisense Interval_169274 chr9 96043857 96044717 + 0 NA intron (ENSMUSG00000032410.13, intron 37 of 41) protein_coding-intron (ENSMUSG00000032410.13, intron 37 of 41) -3614 ENSMUSG00000100931.1 ENSMUSG00000100931 ENSMUST00000189281 Gm28085 antisense Interval_81980 chr18 66805914 66806104 + 0 NA Intergenic Intergenic 44877 ENSMUSG00000117968.1 ENSMUSG00000117968 ENSMUST00000237489 Gm50162 lincRNA Interval_61904 chr15 85051451 85052232 + 0 NA exon (ENSMUSG00000022434.8, exon 5 of 5) protein_coding-exon (ENSMUSG00000022434.8, exon 5 of 5) 14654 ENSMUSG00000022434.8 ENSMUSG00000022434 ENSMUST00000229691 Fam118a protein_coding Interval_169849 chr9 102478987 102479584 + 0 NA Intergenic Intergenic -7505 ENSMUSG00000111859.1 ENSMUSG00000111859 ENSMUST00000213941 Gm47983 TEC Interval_12297 chr1 191495077 191495600 + 0 NA Intergenic Intergenic -1433 ENSMUSG00000103517.1 ENSMUSG00000103517 ENSMUST00000195294 Gm37432 lincRNA Interval_15407 chr10 45619505 45620238 + 0 NA intron (ENSMUSG00000038822.15, intron 5 of 6) protein_coding-intron (ENSMUSG00000038822.15, intron 6 of 23) -37084 ENSMUSG00000111491.1 ENSMUSG00000111491 ENSMUST00000215636 Gm47503 TEC Interval_135078 chr6 35217197 35217557 + 0 NA intron (ENSMUSG00000038759.15, intron 9 of 29) protein_coding-intron (ENSMUSG00000038759.15, intron 22 of 42) -26218 ENSMUSG00000087808.1 ENSMUSG00000087808 ENSMUST00000157183 Gm23435 snRNA Interval_76695 chr17 83548732 83549352 + 0 NA Intergenic Intergenic -44536 ENSMUSG00000024248.14 ENSMUSG00000024248 ENSMUST00000234258 Cox7a2l protein_coding Interval_61736 chr15 83651071 83652287 + 0 NA exon (ENSMUSG00000016763.15, exon 7 of 23) protein_coding-exon (ENSMUSG00000016763.15, exon 7 of 23) -37940 ENSMUSG00000016763.15 ENSMUSG00000016763 ENSMUST00000229057 Scube1 protein_coding Interval_131478 chr5 137480326 137480520 + 0 NA Intergenic Intergenic 5393 ENSMUSG00000029711.13 ENSMUSG00000029711 ENSMUST00000111039 Epo protein_coding Interval_130270 chr5 125331250 125332013 + 0 NA intron (ENSMUSG00000037936.15, intron 1 of 10) protein_coding-intron (ENSMUSG00000037936.15, intron 1 of 12) -3912 ENSMUSG00000037936.15 ENSMUSG00000037936 ENSMUST00000197310 Scarb1 protein_coding Interval_136802 chr6 60513083 60513775 + 0 NA Intergenic Intergenic 23473 ENSMUSG00000108192.1 ENSMUSG00000108192 ENSMUST00000203151 Gm44410 lincRNA Interval_129462 chr5 120351254 120352192 + 0 NA Intergenic Intergenic -5755 ENSMUSG00000107141.1 ENSMUSG00000107141 ENSMUST00000200789 Gm42654 lincRNA Interval_146308 chr7 45247447 45248298 + 0 NA intron (ENSMUSG00000094152.5, intron 1 of 12) protein_coding-intron (ENSMUSG00000094152.5, intron 1 of 12) 6682 ENSMUSG00000088281.1 ENSMUSG00000088281 ENSMUST00000157656 Gm23585 snRNA Interval_50492 chr14 14054344 14055114 + 0 NA intron (ENSMUSG00000021738.5, intron 5 of 12) protein_coding-intron (ENSMUSG00000021738.5, intron 4 of 11) 41585 ENSMUSG00000021738.5 ENSMUSG00000021738 ENSMUST00000224315 Atxn7 protein_coding Interval_112952 chr4 46374538 46375436 + 0 NA Intergenic Intergenic 14431 ENSMUSG00000028331.12 ENSMUSG00000028331 ENSMUST00000030015 Trmo protein_coding Interval_141110 chr6 125049496 125051479 + 0 NA promoter-TSS (ENSMUSG00000108034.1) antisense-promoter-TSS (ENSMUSG00000108034.1) -636 ENSMUSG00000108034.1 ENSMUSG00000108034 ENSMUST00000205110 4930557K07Rik antisense Interval_13990 chr10 25313207 25314748 + 0 NA Intergenic Intergenic 15368 ENSMUSG00000112352.1 ENSMUSG00000112352 ENSMUST00000218840 Gm40617 antisense Interval_31061 chr11 97943300 97943642 + 0 NA intron (ENSMUSG00000017417.14, intron 6 of 7) protein_coding-intron (ENSMUSG00000017417.14, intron 7 of 13) -1731 ENSMUSG00000093013.1 ENSMUSG00000093013 ENSMUST00000175272 Gm22461 miRNA Interval_45520 chr13 55621872 55623513 + 0 NA promoter-TSS (ENSMUSG00000021501.4) protein_coding-promoter-TSS (ENSMUSG00000021501.4) -506 ENSMUSG00000021501.4 ENSMUSG00000021501 ENSMUST00000165154 Caml protein_coding Interval_78677 chr18 16806817 16809844 + 0 NA intron (ENSMUSG00000024304.14, intron 1 of 1) protein_coding-intron (ENSMUSG00000024304.14, intron 1 of 15) 132 ENSMUSG00000024304.14 ENSMUSG00000024304 ENSMUST00000152779 Cdh2 protein_coding Interval_61101 chr15 79229007 79229913 + 0 NA promoter-TSS (ENSMUSG00000068206.13) protein_coding-promoter-TSS (ENSMUSG00000068206.13) 69 ENSMUSG00000116121.1 ENSMUSG00000116121 ENSMUST00000053926 Gm49486 protein_coding Interval_143087 chr6 149178605 149178895 + 0 NA exon (ENSMUSG00000068250.13, exon 1 of 1) protein_coding-exon (ENSMUSG00000068250.13, exon 1 of 1) 9931 ENSMUSG00000068250.13 ENSMUSG00000068250 ENSMUST00000203043 Amn1 protein_coding Interval_48951 chr13 105587795 105588101 + 0 NA Intergenic Intergenic -17985 ENSMUSG00000114518.1 ENSMUSG00000114518 ENSMUST00000224120 Gm48208 processed_pseudogene Interval_65193 chr16 20451723 20452074 + 0 NA Intergenic Intergenic 6245 ENSMUSG00000088049.1 ENSMUSG00000088049 ENSMUST00000157424 Gm23332 misc_RNA Interval_79357 chr18 31104435 31105166 + 0 NA intron (ENSMUSG00000057455.12, intron 4 of 4) protein_coding-intron (ENSMUSG00000057455.12, intron 3 of 3) 107932 ENSMUSG00000057455.12 ENSMUSG00000057455 ENSMUST00000139924 Rit2 protein_coding Interval_171942 chr9 122773456 122774061 + 0 NA intron (ENSMUSG00000094985.2, intron 6 of 19) protein_coding-intron (ENSMUSG00000094985.2, intron 6 of 19) 23155 ENSMUSG00000094985.2 ENSMUSG00000094985 ENSMUST00000213519 Topaz1 protein_coding Interval_47957 chr13 94632640 94632961 + 0 NA Intergenic Intergenic 13520 ENSMUSG00000103438.1 ENSMUSG00000103438 ENSMUST00000191800 Gm36991 TEC Interval_121000 chr4 152140632 152140870 + 0 NA intron (ENSMUSG00000028943.18, intron 2 of 11) protein_coding-intron (ENSMUSG00000028943.18, intron 2 of 15) 11471 ENSMUSG00000028943.18 ENSMUSG00000028943 ENSMUST00000148075 Espn protein_coding Interval_101495 chr2 181959540 181959886 + 0 NA Intergenic Intergenic -31416 ENSMUSG00000098505.3 ENSMUSG00000098505 ENSMUST00000184507 Gm14496 protein_coding Interval_32749 chr11 110324318 110324920 + 0 NA TTS (ENSMUSG00000018800.14) protein_coding-TTS (ENSMUSG00000018800.14) 13097 ENSMUSG00000018800.14 ENSMUSG00000018800 ENSMUST00000148984 Abca5 protein_coding Interval_104199 chr3 60437151 60437435 + 0 NA Intergenic Intergenic -63972 ENSMUSG00000027763.13 ENSMUSG00000027763 ENSMUST00000193175 Mbnl1 protein_coding Interval_174509 chrX 153976607 153976965 + 0 NA Intergenic Intergenic 34478 ENSMUSG00000094802.7 ENSMUSG00000094802 ENSMUST00000178342 Samt1 protein_coding Interval_109692 chr3 146024461 146025223 + 0 NA Intergenic Intergenic -13603 ENSMUSG00000105146.1 ENSMUSG00000105146 ENSMUST00000196412 Gm35409 lincRNA Interval_91445 chr2 38916948 38917504 + 0 NA intron (ENSMUSG00000063972.13, intron 1 of 5) protein_coding-intron (ENSMUSG00000063972.13, intron 1 of 10) -14752 ENSMUSG00000046618.7 ENSMUSG00000046618 ENSMUST00000057279 Olfml2a protein_coding Interval_152854 chr7 138840423 138840975 + 0 NA exon (ENSMUSG00000041775.7, exon 2 of 3) protein_coding-exon (ENSMUSG00000041775.7, exon 2 of 3) 5574 ENSMUSG00000041775.7 ENSMUSG00000041775 ENSMUST00000118810 Mapk1ip1 protein_coding Interval_134481 chr6 29038307 29039029 + 0 NA Intergenic Intergenic 16049 ENSMUSG00000065469.1 ENSMUSG00000065469 ENSMUST00000083535 Mir129-1 miRNA Interval_38908 chr12 83730419 83730911 + 0 NA exon (ENSMUSG00000019969.14, exon 10 of 12) protein_coding-exon (ENSMUSG00000019969.14, exon 10 of 12) 792 ENSMUSG00000114050.1 ENSMUSG00000114050 ENSMUST00000222646 Gm47666 antisense Interval_150667 chr7 113192673 113194070 + 0 NA Intergenic Intergenic -41252 ENSMUSG00000055116.8 ENSMUSG00000055116 ENSMUST00000211547 Arntl protein_coding Interval_130693 chr5 129792914 129794061 + 0 NA exon (ENSMUSG00000029447.11, exon 1 of 2) protein_coding-exon (ENSMUSG00000029447.11, exon 1 of 2) -1059 ENSMUSG00000093413.1 ENSMUSG00000093413 ENSMUST00000177461 Snora15 snoRNA Interval_22737 chr11 14181900 14182882 + 0 NA Intergenic Intergenic -3350 ENSMUSG00000085452.1 ENSMUSG00000085452 ENSMUST00000126260 4930554G24Rik lincRNA Interval_30127 chr11 89461037 89462424 + 0 NA intron (ENSMUSG00000047773.15, intron 9 of 21) protein_coding-intron (ENSMUSG00000047773.15, intron 7 of 16) 159007 ENSMUSG00000085798.1 ENSMUSG00000085798 ENSMUST00000140754 Gm2018 lincRNA Interval_7583 chr1 132330850 132331891 + 0 NA TTS (ENSMUSG00000009772.15) protein_coding-TTS (ENSMUSG00000009772.15) 3774 ENSMUSG00000009772.15 ENSMUSG00000009772 ENSMUST00000133246 Nuak2 protein_coding Interval_164749 chr9 41068003 41068396 + 0 NA intron (ENSMUSG00000032020.15, intron 1 of 3) protein_coding-intron (ENSMUSG00000032020.15, intron 1 of 13) 11307 ENSMUSG00000032020.15 ENSMUSG00000032020 ENSMUST00000132996 Ubash3b protein_coding Interval_112637 chr4 43726933 43727429 + 0 NA promoter-TSS (ENSMUSG00000071001.4) protein_coding-promoter-TSS (ENSMUSG00000071001.4) -7 ENSMUSG00000071001.4 ENSMUSG00000071001 ENSMUST00000095109 Hrct1 protein_coding Interval_120423 chr4 148525609 148526198 + 0 NA intron (ENSMUSG00000028991.15, intron 33 of 57) protein_coding-intron (ENSMUSG00000028991.15, intron 33 of 57) -13224 ENSMUSG00000089081.1 ENSMUSG00000089081 ENSMUST00000158456 Gm24002 snRNA Interval_148941 chr7 90210961 90211486 + 0 NA exon (ENSMUSG00000039361.11, exon 21 of 21) protein_coding-exon (ENSMUSG00000039361.11, exon 21 of 21) 9945 ENSMUSG00000109279.1 ENSMUSG00000109279 ENSMUST00000207847 Gm45220 TEC Interval_134957 chr6 34114321 34115002 + 0 NA intron (ENSMUSG00000056215.13, intron 15 of 19) protein_coding-intron (ENSMUSG00000056215.13, intron 15 of 19) -37268 ENSMUSG00000087356.1 ENSMUSG00000087356 ENSMUST00000126498 Gm13856 antisense Interval_63364 chr15 100621374 100622366 + 0 NA exon (ENSMUSG00000053559.13, exon 4 of 4) protein_coding-exon (ENSMUSG00000053559.13, exon 4 of 4) 5936 ENSMUSG00000000346.9 ENSMUSG00000000346 ENSMUST00000230384 Dazap2 protein_coding Interval_143942 chr7 18264740 18265322 + 0 NA exon (ENSMUSG00000054005.4, exon 5 of 5) protein_coding-exon (ENSMUSG00000054005.4, exon 5 of 5) 19684 ENSMUSG00000054005.4 ENSMUSG00000054005 ENSMUST00000066780 Mill1 protein_coding Interval_154018 chr8 11921450 11921891 + 0 NA Intergenic Intergenic 26627 ENSMUSG00000110002.1 ENSMUSG00000110002 ENSMUST00000211135 Gm45680 lincRNA Interval_169001 chr9 90126235 90127283 + 0 NA Intergenic Intergenic 7822 ENSMUSG00000096647.2 ENSMUSG00000096647 ENSMUST00000178436 Tmem41b-ps processed_pseudogene Interval_130729 chr5 130007519 130007770 + 0 NA Intergenic Intergenic -4816 ENSMUSG00000025534.17 ENSMUSG00000025534 ENSMUST00000122994 Gusb protein_coding Interval_89273 chr2 18704631 18705242 + 0 NA intron (ENSMUSG00000037708.16, intron 1 of 3) protein_coding-intron (ENSMUSG00000037708.16, intron 2 of 10) 5852 ENSMUSG00000037708.16 ENSMUSG00000037708 ENSMUST00000173763 Spag6 protein_coding Interval_114303 chr4 72010418 72010909 + 0 NA Intergenic Intergenic 30186 ENSMUSG00000086696.1 ENSMUSG00000086696 ENSMUST00000141030 Gm11234 lincRNA Interval_71571 chr17 24617558 24618351 + 0 NA intron (ENSMUSG00000002496.10, intron 16 of 39) protein_coding-intron (ENSMUSG00000002496.10, intron 16 of 39) -11444 ENSMUSG00000002496.10 ENSMUSG00000002496 ENSMUST00000227509 Tsc2 protein_coding Interval_70916 chr17 15866783 15868039 + 0 NA Intergenic Intergenic 22131 ENSMUSG00000116545.1 ENSMUSG00000116545 ENSMUST00000231929 Eif3s6-ps3 processed_pseudogene Interval_117779 chr4 126189615 126189823 + 0 NA intron (ENSMUSG00000043962.16, intron 1 of 2) protein_coding-intron (ENSMUSG00000043962.16, intron 1 of 10) -9572 ENSMUSG00000043962.16 ENSMUSG00000043962 ENSMUST00000124327 Thrap3 protein_coding Interval_58079 chr15 27715098 27715709 + 0 NA Intergenic Intergenic -55251 ENSMUSG00000056069.10 ENSMUSG00000056069 ENSMUST00000232492 Otulinl protein_coding Interval_143325 chr7 5355770 5356112 + 0 NA intron (ENSMUSG00000048398.7, intron 1 of 2) protein_coding-intron (ENSMUSG00000048398.7, intron 1 of 1) 2455 ENSMUSG00000108904.1 ENSMUSG00000108904 ENSMUST00000207410 Gm45147 processed_pseudogene Interval_168930 chr9 89110750 89110971 + 0 NA Intergenic Intergenic -18170 ENSMUSG00000079162.8 ENSMUSG00000079162 ENSMUST00000189557 Trim43b protein_coding Interval_120956 chr4 151912769 151913328 + 0 NA Intergenic Intergenic 3366 ENSMUSG00000104142.1 ENSMUSG00000104142 ENSMUST00000191938 Gm37141 TEC Interval_162556 chr9 4283396 4284835 + 0 NA Intergenic Intergenic -12878 ENSMUSG00000080511.1 ENSMUSG00000080511 ENSMUST00000116861 Gm22195 miRNA Interval_55285 chr14 80257117 80257521 + 0 NA Intergenic Intergenic 42389 ENSMUSG00000115334.1 ENSMUSG00000115334 ENSMUST00000226677 Gm17923 processed_pseudogene Interval_79515 chr18 32642526 32642736 + 0 NA Intergenic Intergenic -20575 ENSMUSG00000087715.1 ENSMUSG00000087715 ENSMUST00000157090 Gm25826 snoRNA Interval_133622 chr6 7728247 7728503 + 0 NA Intergenic Intergenic -35503 ENSMUSG00000029752.12 ENSMUSG00000029752 ENSMUST00000148349 Asns protein_coding Interval_174110 chrX 135209645 135210192 + 0 NA exon (ENSMUSG00000031409.1, exon 2 of 3) protein_coding-exon (ENSMUSG00000031409.1, exon 2 of 3) 769 ENSMUSG00000031409.1 ENSMUSG00000031409 ENSMUST00000033783 Tceal6 protein_coding Interval_263 KZ289068.1 406582 408275 + 0 NA NA NA NA NA Interval_166558 chr9 60887521 60888508 + 0 NA Intergenic Intergenic -31209 ENSMUSG00000111444.1 ENSMUSG00000111444 ENSMUST00000216374 Gm47923 lincRNA Interval_14101 chr10 27121709 27121982 + 0 NA intron (ENSMUSG00000019899.17, intron 35 of 64) protein_coding-intron (ENSMUSG00000019899.17, intron 35 of 64) 90409 ENSMUSG00000019899.17 ENSMUSG00000019899 ENSMUST00000187535 Lama2 protein_coding Interval_5639 chr1 90487974 90488183 + 0 NA Intergenic Intergenic -32418 ENSMUSG00000103292.1 ENSMUSG00000103292 ENSMUST00000192105 Gm35048 TEC Interval_12268 chr1 191282583 191283773 + 0 NA intron (ENSMUSG00000103174.1, intron 3 of 5) lincRNA-intron (ENSMUSG00000103174.1, intron 3 of 5) 16000 ENSMUSG00000103174.1 ENSMUSG00000103174 ENSMUST00000192965 Gm37168 lincRNA Interval_161781 chr8 122745232 122745676 + 0 NA intron (ENSMUSG00000110523.1, intron 1 of 2) protein_coding-intron (ENSMUSG00000092329.1, intron 1 of 15) 6871 ENSMUSG00000110523.1 ENSMUSG00000110523 ENSMUST00000212334 C230057M02Rik lincRNA Interval_143070 chr6 149057866 149058243 + 0 NA intron (ENSMUSG00000030313.15, intron 3 of 13) protein_coding-intron (ENSMUSG00000030313.15, intron 3 of 20) -4206 ENSMUSG00000107970.1 ENSMUSG00000107970 ENSMUST00000204155 Gm49058 TEC Interval_57941 chr15 25656882 25659133 + 0 NA intron (ENSMUSG00000022272.17, intron 1 of 21) protein_coding-intron (ENSMUSG00000022272.17, intron 1 of 40) 23380 ENSMUSG00000115252.1 ENSMUSG00000115252 ENSMUST00000228949 Gm48996 TEC Interval_44464 chr13 44990826 44991049 + 0 NA intron (ENSMUSG00000057531.14, intron 4 of 5) protein_coding-intron (ENSMUSG00000057531.14, intron 3 of 9) 11115 ENSMUSG00000057531.14 ENSMUSG00000057531 ENSMUST00000223524 Dtnbp1 protein_coding Interval_6469 chr1 110790291 110791316 + 0 NA Intergenic Intergenic 170023 ENSMUSG00000102788.1 ENSMUSG00000102788 ENSMUST00000194910 Gm38255 TEC Interval_121417 chr4 155668702 155670964 + 0 NA promoter-TSS (ENSMUSG00000029060.17) protein_coding-promoter-TSS (ENSMUSG00000029060.17) -636 ENSMUSG00000029060.17 ENSMUSG00000029060 ENSMUST00000139289 Mib2 protein_coding Interval_169088 chr9 92174365 92175893 + 0 NA Intergenic Intergenic -17807 ENSMUSG00000095654.2 ENSMUSG00000095654 ENSMUST00000179751 Plscr5 protein_coding Interval_63084 chr15 99003114 99003782 + 0 NA Intergenic Intergenic -2609 ENSMUSG00000064081.4 ENSMUSG00000064081 ENSMUST00000079818 Gm8973 processed_pseudogene Interval_55860 chr14 101607648 101609318 + 0 NA promoter-TSS (ENSMUSG00000033083.16) protein_coding-promoter-TSS (ENSMUSG00000033083.16) 3 ENSMUSG00000033083.16 ENSMUSG00000033083 ENSMUST00000160473 Tbc1d4 protein_coding Interval_83263 chr18 83100493 83100916 + 0 NA intron (ENSMUSG00000100430.2, intron 1 of 1) lincRNA-intron (ENSMUSG00000100430.2, intron 1 of 1) 7156 ENSMUSG00000100430.2 ENSMUSG00000100430 ENSMUST00000236396 1700095A13Rik lincRNA Interval_54769 chr14 74913100 74914409 + 0 NA intron (ENSMUSG00000068015.8, intron 1 of 18) protein_coding-intron (ENSMUSG00000068015.8, intron 1 of 19) -12691 ENSMUSG00000115002.1 ENSMUSG00000115002 ENSMUST00000227773 Gm10847 antisense Interval_108310 chr3 123548471 123548814 + 0 NA intron (ENSMUSG00000027977.15, intron 11 of 13) protein_coding-intron (ENSMUSG00000027977.15, intron 10 of 12) 11487 ENSMUSG00000027977.15 ENSMUSG00000027977 ENSMUST00000132896 Ndst3 protein_coding Interval_3357 chr1 57393697 57394478 + 0 NA promoter-TSS (ENSMUSG00000048495.16) protein_coding-promoter-TSS (ENSMUSG00000048495.16) 7435 ENSMUSG00000048495.16 ENSMUSG00000048495 ENSMUST00000161780 Tyw5 protein_coding Interval_18834 chr10 91170689 91172292 + 0 NA promoter-TSS (ENSMUSG00000019961.17) protein_coding-promoter-TSS (ENSMUSG00000019961.17) -1028 ENSMUSG00000019961.17 ENSMUSG00000019961 ENSMUST00000213270 Tmpo protein_coding Interval_75267 chr17 65574414 65575855 + 0 NA Intergenic Intergenic -14358 ENSMUSG00000117158.1 ENSMUSG00000117158 ENSMUST00000233030 Gm49866 processed_pseudogene Interval_62759 chr15 96679257 96679548 + 0 NA Intergenic Intergenic 7609 ENSMUSG00000064928.1 ENSMUSG00000064928 ENSMUST00000082994 Gm22045 snRNA Interval_166799 chr9 62783219 62784586 + 0 NA TTS (ENSMUSG00000032243.8) protein_coding-TTS (ENSMUSG00000032243.8) -6002 ENSMUSG00000111537.1 ENSMUSG00000111537 ENSMUST00000214567 Gm7653 processed_pseudogene Interval_3049 chr1 52660784 52660982 + 0 NA promoter-TSS (ENSMUSG00000041439.15) protein_coding-promoter-TSS (ENSMUSG00000041439.15) -585 ENSMUSG00000041439.15 ENSMUSG00000041439 ENSMUST00000147421 Mfsd6 protein_coding Interval_167749 chr9 72494023 72494505 + 0 NA Intergenic Intergenic -2325 ENSMUSG00000090626.9 ENSMUSG00000090626 ENSMUST00000184624 Tex9 protein_coding Interval_168532 chr9 83195989 83197401 + 0 NA Intergenic Intergenic -20918 ENSMUSG00000104080.1 ENSMUSG00000104080 ENSMUST00000194067 Gm38279 TEC Interval_69148 chr16 90966213 90966461 + 0 NA intron (ENSMUSG00000022973.18, intron 15 of 32) protein_coding-intron (ENSMUSG00000022973.18, intron 14 of 18) -10927 ENSMUSG00000022973.18 ENSMUSG00000022973 ENSMUST00000156140 Synj1 protein_coding Interval_22145 chr11 6598762 6599091 + 0 NA exon (ENSMUSG00000041073.10, exon 4 of 8) protein_coding-exon (ENSMUSG00000041073.10, exon 4 of 8) 1012 ENSMUSG00000041073.10 ENSMUSG00000041073 ENSMUST00000177391 Nacad protein_coding Interval_168806 chr9 87254764 87255886 + 0 NA promoter-TSS (ENSMUSG00000056919.9) protein_coding-promoter-TSS (ENSMUSG00000056919.9) -27367 ENSMUSG00000056919.9 ENSMUSG00000056919 ENSMUST00000144137 Cep162 protein_coding Interval_70800 chr17 14739382 14739600 + 0 NA Intergenic Intergenic 30425 ENSMUSG00000079311.1 ENSMUSG00000079311 ENSMUST00000071282 Gm3222 processed_pseudogene Interval_87194 chr19 46795686 46795922 + 0 NA intron (ENSMUSG00000064105.13, intron 1 of 1) protein_coding-intron (ENSMUSG00000064105.13, intron 1 of 6) -69856 ENSMUSG00000064105.13 ENSMUSG00000064105 ENSMUST00000235671 Cnnm2 protein_coding Interval_132479 chr5 145203906 145204668 + 0 NA promoter-TSS (ENSMUSG00000055991.15) protein_coding-promoter-TSS (ENSMUSG00000055991.15) -2419 ENSMUSG00000029627.12 ENSMUSG00000029627 ENSMUST00000198959 Zkscan14 protein_coding Interval_82555 chr18 75139281 75140383 + 0 NA intron (ENSMUSG00000035765.10, intron 13 of 16) protein_coding-intron (ENSMUSG00000035765.10, intron 13 of 16) 14407 ENSMUSG00000035765.10 ENSMUSG00000035765 ENSMUST00000236840 Dym protein_coding Interval_35653 chr12 26653829 26654822 + 0 NA Intergenic Intergenic -52016 ENSMUSG00000113628.1 ENSMUSG00000113628 ENSMUST00000221140 1700020D12Rik lincRNA Interval_98798 chr2 155073694 155075154 + 0 NA promoter-TSS (ENSMUSG00000027597.15) protein_coding-promoter-TSS (ENSMUSG00000027597.15) 23 ENSMUSG00000027597.15 ENSMUSG00000027597 ENSMUST00000146367 Ahcy protein_coding Interval_26254 chr11 55444812 55445470 + 0 NA Intergenic Intergenic 16056 ENSMUSG00000018585.9 ENSMUSG00000018585 ENSMUST00000138412 Atox1 protein_coding Interval_86797 chr19 43929476 43931094 + 0 NA intron (ENSMUSG00000025195.9, intron 1 of 1) protein_coding-intron (ENSMUSG00000025195.9, intron 1 of 1) -2031 ENSMUSG00000084641.1 ENSMUSG00000084641 ENSMUST00000122692 n-R5s21 rRNA Interval_12698 chr10 4368799 4370371 + 0 NA exon (ENSMUSG00000075327.10, exon 3 of 3) protein_coding-exon (ENSMUSG00000075327.10, exon 3 of 3) 4290 ENSMUSG00000075327.10 ENSMUSG00000075327 ENSMUST00000215860 Zbtb2 protein_coding Interval_136669 chr6 57477824 57478115 + 0 NA intron (ENSMUSG00000093535.1, intron 1 of 6) antisense-intron (ENSMUSG00000093535.1, intron 1 of 6) 1272 ENSMUSG00000093535.1 ENSMUSG00000093535 ENSMUST00000176290 4930533I22Rik antisense Interval_134931 chr6 33819657 33820192 + 0 NA intron (ENSMUSG00000029763.17, intron 3 of 4) protein_coding-intron (ENSMUSG00000029763.17, intron 12 of 17) -127770 ENSMUSG00000107103.1 ENSMUSG00000107103 ENSMUST00000202529 Gm43164 TEC Interval_151718 chr7 126235386 126238448 + 0 NA intron (ENSMUSG00000108676.1, intron 2 of 4) lincRNA-intron (ENSMUSG00000108676.1, intron 2 of 4) 5710 ENSMUSG00000108309.1 ENSMUSG00000108309 ENSMUST00000205724 Gm44703 processed_pseudogene Interval_92799 chr2 65508281 65508946 + 0 NA promoter-TSS (ENSMUSG00000086701.1) antisense-promoter-TSS (ENSMUSG00000086701.1) -652 ENSMUSG00000086701.1 ENSMUSG00000086701 ENSMUST00000145994 Gm13595 antisense Interval_149104 chr7 93287838 93288179 + 0 NA Intergenic Intergenic 35942 ENSMUSG00000109175.1 ENSMUSG00000109175 ENSMUST00000208462 Gm44947 lincRNA Interval_118401 chr4 131145703 131146108 + 0 NA Intergenic Intergenic -93372 ENSMUSG00000088041.1 ENSMUSG00000088041 ENSMUST00000157416 Gm25261 snoRNA Interval_135979 chr6 49217577 49218535 + 0 NA Intergenic Intergenic -36795 ENSMUSG00000107962.1 ENSMUSG00000107962 ENSMUST00000204899 Gm43980 TEC Interval_100145 chr2 167315366 167315640 + 0 NA intron (ENSMUSG00000017929.13, intron 1 of 8) protein_coding-intron (ENSMUSG00000017929.13, intron 1 of 8) -1648 ENSMUSG00000017929.13 ENSMUSG00000017929 ENSMUST00000133557 B4galt5 protein_coding Interval_114670 chr4 83634396 83634724 + 0 NA intron (ENSMUSG00000052407.17, intron 10 of 25) protein_coding-intron (ENSMUSG00000052407.17, intron 10 of 25) 37257 ENSMUSG00000098217.1 ENSMUSG00000098217 ENSMUST00000182160 Gm27046 processed_pseudogene Interval_146855 chr7 53519344 53519570 + 0 NA Intergenic Intergenic 372432 ENSMUSG00000099176.1 ENSMUSG00000099176 ENSMUST00000184140 Mir6238 miRNA Interval_100598 chr2 170356552 170357594 + 0 NA promoter-TSS (ENSMUSG00000013523.13) protein_coding-promoter-TSS (ENSMUSG00000013523.13) 712 ENSMUSG00000086999.1 ENSMUSG00000086999 ENSMUST00000131931 Bcas1os2 antisense Interval_54857 chr14 75862782 75864405 + 0 NA Intergenic Intergenic 15688 ENSMUSG00000065147.1 ENSMUSG00000065147 ENSMUST00000083213 Snora31 snoRNA Interval_133219 chr5 150645426 150646270 + 0 NA exon (ENSMUSG00000029655.17, exon 1 of 1) protein_coding-exon (ENSMUSG00000029655.17, exon 1 of 1) 20335 ENSMUSG00000029655.17 ENSMUSG00000029655 ENSMUST00000201390 N4bp2l2 protein_coding Interval_162448 chr8 128873109 128873969 + 0 NA intron (ENSMUSG00000025808.17, intron 35 of 55) protein_coding-intron (ENSMUSG00000025808.17, intron 35 of 55) -74373 ENSMUSG00000025808.17 ENSMUSG00000025808 ENSMUST00000108747 Ccdc7a protein_coding Interval_48522 chr13 99753561 99754804 + 0 NA Intergenic Intergenic -61653 ENSMUSG00000077673.1 ENSMUSG00000077673 ENSMUST00000104485 Gm24471 snoRNA Interval_27743 chr11 69746719 69746933 + 0 NA exon (ENSMUSG00000005198.15, exon 5 of 29) protein_coding-exon (ENSMUSG00000005198.15, exon 5 of 29) -9478 ENSMUSG00000005198.15 ENSMUSG00000005198 ENSMUST00000151586 Polr2a protein_coding Interval_53209 chr14 55139341 55140264 + 0 NA Intergenic Intergenic 12485 ENSMUSG00000115250.1 ENSMUSG00000115250 ENSMUST00000228398 Gm49020 TEC Interval_3693 chr1 60888231 60888638 + 0 NA intron (ENSMUSG00000026011.13, intron 1 of 3) protein_coding-intron (ENSMUSG00000026011.13, intron 1 of 3) 1434 ENSMUSG00000026011.13 ENSMUSG00000026011 ENSMUST00000097720 Ctla4 protein_coding Interval_23721 chr11 25326348 25326827 + 0 NA intron (ENSMUSG00000033015.16, intron 1 of 2) lincRNA-intron (ENSMUSG00000033015.16, intron 1 of 7) 25324 ENSMUSG00000086439.1 ENSMUSG00000086439 ENSMUST00000145127 Gm12069 lincRNA Interval_61455 chr15 81739587 81740306 + 0 NA intron (ENSMUSG00000022391.16, intron 1 of 4) protein_coding-intron (ENSMUSG00000022391.16, intron 1 of 4) 5584 ENSMUSG00000022391.16 ENSMUSG00000022391 ENSMUST00000230726 Rangap1 protein_coding Interval_33785 chr11 118487992 118488621 + 0 NA TTS (ENSMUSG00000033857.12) protein_coding-TTS (ENSMUSG00000033857.12) -8848 ENSMUSG00000087036.1 ENSMUSG00000087036 ENSMUST00000153825 Gm11748 processed_transcript Interval_57822 chr15 21993343 21993611 + 0 NA Intergenic Intergenic 35045 ENSMUSG00000115708.1 ENSMUSG00000115708 ENSMUST00000227154 Gm49187 TEC Interval_103463 chr3 41776039 41776376 + 0 NA TTS (ENSMUSG00000103952.1) TEC-TTS (ENSMUSG00000103952.1) 3026 ENSMUSG00000103952.1 ENSMUSG00000103952 ENSMUST00000192254 Gm37268 TEC Interval_6731 chr1 119037929 119038165 + 0 NA intron (ENSMUSG00000048402.14, intron 1 of 6) protein_coding-intron (ENSMUSG00000048402.14, intron 1 of 13) 15292 ENSMUSG00000048402.14 ENSMUSG00000048402 ENSMUST00000159678 Gli2 protein_coding Interval_8461 chr1 139581171 139581536 + 0 NA Intergenic Intergenic -27754 ENSMUSG00000057037.8 ENSMUSG00000057037 ENSMUST00000161224 Cfhr1 protein_coding Interval_77195 chr17 87281949 87284062 + 0 NA promoter-TSS (ENSMUSG00000036918.16) protein_coding-promoter-TSS (ENSMUSG00000036918.16) 57 ENSMUSG00000036918.16 ENSMUSG00000036918 ENSMUST00000148126 Ttc7 protein_coding Interval_96827 chr2 128650513 128650751 + 0 NA intron (ENSMUSG00000014355.10, intron 24 of 27) protein_coding-intron (ENSMUSG00000014355.10, intron 24 of 47) -21993 ENSMUSG00000014355.10 ENSMUSG00000014355 ENSMUST00000110332 Anapc1 protein_coding Interval_128125 chr5 111140407 111140606 + 0 NA intron (ENSMUSG00000033209.17, intron 5 of 22) protein_coding-intron (ENSMUSG00000033209.17, intron 5 of 23) -17805 ENSMUSG00000106153.1 ENSMUSG00000106153 ENSMUST00000198098 Gm43677 TEC Interval_100054 chr2 166767297 166768071 + 0 NA Intergenic Intergenic -1061 ENSMUSG00000088063.1 ENSMUSG00000088063 ENSMUST00000157438 Gm24477 snRNA Interval_107423 chr3 107537102 107537714 + 0 NA Intergenic Intergenic 17665 ENSMUSG00000055891.7 ENSMUSG00000055891 ENSMUST00000052853 Ubl4b protein_coding Interval_30885 chr11 97058095 97058786 + 0 NA intron (ENSMUSG00000038534.19, intron 12 of 23) protein_coding-intron (ENSMUSG00000038534.19, intron 12 of 22) -5328 ENSMUSG00000098769.1 ENSMUSG00000098769 ENSMUST00000183945 Mir8103 miRNA Interval_30504 chr11 94813530 94813726 + 0 NA promoter-TSS (ENSMUSG00000081478.1) unprocessed_pseudogene-promoter-TSS (ENSMUSG00000081478.1) -280 ENSMUSG00000081478.1 ENSMUSG00000081478 ENSMUST00000121794 AA623943 unprocessed_pseudogene Interval_12816 chr10 5804788 5806463 + 0 NA promoter-TSS (ENSMUSG00000019773.7) protein_coding-promoter-TSS (ENSMUSG00000019773.7) -1025 ENSMUSG00000019773.7 ENSMUSG00000019773 ENSMUST00000142200 Fbxo5 protein_coding Interval_156166 chr8 45380629 45382244 + 0 NA exon (ENSMUSG00000070044.15, exon 1 of 14) protein_coding-exon (ENSMUSG00000070044.15, exon 1 of 14) -22674 ENSMUSG00000070044.15 ENSMUSG00000070044 ENSMUST00000155230 Fam149a protein_coding Interval_23116 chr11 20025863 20026940 + 0 NA Intergenic Intergenic 71831 ENSMUSG00000045671.17 ENSMUSG00000045671 ENSMUST00000123036 Spred2 protein_coding Interval_15102 chr10 42582047 42584926 + 0 NA promoter-TSS (ENSMUSG00000038280.12) protein_coding-promoter-TSS (ENSMUSG00000038280.12) -2712 ENSMUSG00000019803.11 ENSMUSG00000019803 ENSMUST00000143891 Nr2e1 protein_coding Interval_52767 chr14 49610348 49610528 + 0 NA Intergenic Intergenic -37120 ENSMUSG00000089187.1 ENSMUSG00000089187 ENSMUST00000158562 Gm22949 miRNA Interval_119171 chr4 135963117 135964635 + 0 NA promoter-TSS (ENSMUSG00000028671.16) protein_coding-promoter-TSS (ENSMUSG00000028671.16) -1319 ENSMUSG00000028671.16 ENSMUSG00000028671 ENSMUST00000150430 Gale protein_coding Interval_44771 chr13 48489953 48491429 + 0 NA TTS (ENSMUSG00000050954.15) protein_coding-TTS (ENSMUSG00000050954.15) 22703 ENSMUSG00000050954.15 ENSMUSG00000050954 ENSMUST00000177474 Zfp169 protein_coding Interval_47752 chr13 92324795 92326256 + 0 NA intron (ENSMUSG00000014850.15, intron 9 of 24) protein_coding-intron (ENSMUSG00000014850.15, intron 8 of 23) 19545 ENSMUSG00000100622.1 ENSMUSG00000100622 ENSMUST00000188317 Gm20379 protein_coding Interval_158130 chr8 79055474 79055945 + 0 NA intron (ENSMUSG00000071064.15, intron 1 of 13) protein_coding-intron (ENSMUSG00000071064.15, intron 1 of 2) 27122 ENSMUSG00000071064.15 ENSMUSG00000071064 ENSMUST00000129613 Zfp827 protein_coding Interval_4900 chr1 82007921 82008246 + 0 NA Intergenic Intergenic -97097 ENSMUSG00000103571.1 ENSMUSG00000103571 ENSMUST00000195065 Gm37114 TEC Interval_159496 chr8 95084757 95085268 + 0 NA intron (ENSMUSG00000031787.8, intron 1 of 16) protein_coding-intron (ENSMUSG00000031787.8, intron 2 of 19) 2416 ENSMUSG00000031787.8 ENSMUSG00000031787 ENSMUST00000212565 Katnb1 protein_coding Interval_5703 chr1 91052497 91054157 + 0 NA promoter-TSS (ENSMUSG00000026305.15) protein_coding-promoter-TSS (ENSMUSG00000026305.15) -259 ENSMUSG00000026305.15 ENSMUSG00000026305 ENSMUST00000187532 Lrrfip1 protein_coding Interval_149376 chr7 97828013 97828493 + 0 NA intron (ENSMUSG00000030774.13, intron 1 of 14) protein_coding-intron (ENSMUSG00000030774.13, intron 1 of 1) -65662 ENSMUSG00000030774.13 ENSMUSG00000030774 ENSMUST00000207017 Pak1 protein_coding Interval_95268 chr2 105397949 105399803 + 0 NA intron (ENSMUSG00000005973.6, intron 1 of 5) protein_coding-intron (ENSMUSG00000005973.6, intron 1 of 5) -3528 ENSMUSG00000005973.6 ENSMUSG00000005973 ENSMUST00000127019 Rcn1 protein_coding Interval_77618 chr17 93156128 93158691 + 0 NA Intergenic Intergenic -11103 ENSMUSG00000117591.1 ENSMUSG00000117591 ENSMUST00000234088 Gm49997 processed_pseudogene Interval_131202 chr5 135789328 135789690 + 0 NA intron (ENSMUSG00000019179.10, intron 6 of 7) protein_coding-intron (ENSMUSG00000019179.10, intron 7 of 8) 10824 ENSMUSG00000019179.10 ENSMUSG00000019179 ENSMUST00000143747 Mdh2 protein_coding Interval_124921 chr5 60726221 60726596 + 0 NA Intergenic Intergenic -8969 ENSMUSG00000077555.1 ENSMUSG00000077555 ENSMUST00000104367 Gm23708 snoRNA Interval_55006 chr14 76823240 76824183 + 0 NA Intergenic Intergenic -9110 ENSMUSG00000115353.1 ENSMUSG00000115353 ENSMUST00000227572 Gm48968 lincRNA Interval_73507 chr17 38323381 38323658 + 0 NA Intergenic Intergenic -6334 ENSMUSG00000096840.3 ENSMUSG00000096840 ENSMUST00000077203 Olfr136 protein_coding Interval_36249 chr12 40281596 40282351 + 0 NA Intergenic Intergenic 47005 ENSMUSG00000055917.15 ENSMUSG00000055917 ENSMUST00000221847 Zfp277 protein_coding Interval_27339 chr11 66620907 66621663 + 0 NA Intergenic Intergenic 57678 ENSMUSG00000080978.2 ENSMUSG00000080978 ENSMUST00000121380 Gm12297 processed_pseudogene Interval_64837 chr16 16310989 16311950 + 0 NA TTS (ENSMUSG00000022789.15) protein_coding-TTS (ENSMUSG00000022789.15) 6869 ENSMUSG00000022792.16 ENSMUSG00000022792 ENSMUST00000162734 Yars2 protein_coding Interval_62082 chr15 86270120 86270333 + 0 NA intron (ENSMUSG00000051864.10, intron 3 of 3) protein_coding-intron (ENSMUSG00000051864.10, intron 4 of 12) 34721 ENSMUSG00000051864.10 ENSMUSG00000051864 ENSMUST00000229242 Tbc1d22a protein_coding Interval_83959 chr19 5812111 5812315 + 0 NA Intergenic Intergenic 10272 ENSMUSG00000102349.1 ENSMUSG00000102349 ENSMUST00000192176 Gm37376 TEC Interval_97951 chr2 146067528 146068400 + 0 NA intron (ENSMUSG00000037143.17, intron 1 of 10) protein_coding-intron (ENSMUSG00000037143.17, intron 1 of 6) -133250 ENSMUSG00000001767.5 ENSMUSG00000001767 ENSMUST00000147904 Crnkl1 protein_coding Interval_106250 chr3 94906103 94906442 + 0 NA Intergenic Intergenic 14151 ENSMUSG00000087720.1 ENSMUSG00000087720 ENSMUST00000157095 Gm26279 snRNA Interval_113172 chr4 48885195 48885488 + 0 NA Intergenic Intergenic -11158 ENSMUSG00000077417.1 ENSMUSG00000077417 ENSMUST00000104229 Gm23746 snoRNA Interval_86643 chr19 42247999 42249103 + 0 NA intron (ENSMUSG00000042532.14, intron 1 of 6) protein_coding-intron (ENSMUSG00000042532.14, intron 1 of 6) 977 ENSMUSG00000042532.14 ENSMUSG00000042532 ENSMUST00000087123 Golga7b protein_coding Interval_58291 chr15 31702692 31703590 + 0 NA Intergenic Intergenic 30497 ENSMUSG00000115589.1 ENSMUSG00000115589 ENSMUST00000228855 Gm18003 processed_pseudogene Interval_82702 chr18 76069874 76070262 + 0 NA intron (ENSMUSG00000044646.15, intron 1 of 2) protein_coding-intron (ENSMUSG00000044646.15, intron 3 of 4) 28403 ENSMUSG00000117797.1 ENSMUSG00000117797 ENSMUST00000236092 2900057B20Rik antisense Interval_9535 chr1 158854189 158854482 + 0 NA intron (ENSMUSG00000073530.11, intron 5 of 21) protein_coding-intron (ENSMUSG00000073530.11, intron 5 of 21) 106046 ENSMUSG00000073530.11 ENSMUSG00000073530 ENSMUST00000159892 Pappa2 protein_coding Interval_124500 chr5 49386005 49386800 + 0 NA intron (ENSMUSG00000029088.16, intron 1 of 8) protein_coding-intron (ENSMUSG00000029088.16, intron 1 of 8) 25430 ENSMUSG00000105700.1 ENSMUSG00000105700 ENSMUST00000199945 Gm42772 TEC Interval_104684 chr3 69391360 69392422 + 0 NA intron (ENSMUSG00000027784.10, intron 1 of 3) protein_coding-intron (ENSMUSG00000027784.10, intron 1 of 3) 40477 ENSMUSG00000090743.1 ENSMUSG00000090743 ENSMUST00000165161 Gm17213 processed_pseudogene Interval_60712 chr15 76306826 76307816 + 0 NA promoter-TSS (ENSMUSG00000022562.15) protein_coding-promoter-TSS (ENSMUSG00000022562.15) -5188 ENSMUSG00000022562.15 ENSMUSG00000022562 ENSMUST00000165279 Oplah protein_coding Interval_165118 chr9 44655159 44656512 + 0 NA Intergenic Intergenic 4914 ENSMUSG00000111060.1 ENSMUSG00000111060 ENSMUST00000214694 Gm47238 unprocessed_pseudogene Interval_139782 chr6 108667356 108669027 + 0 NA Intergenic Intergenic 5145 ENSMUSG00000030103.11 ENSMUSG00000030103 ENSMUST00000204550 Bhlhe40 protein_coding Interval_37321 chr12 65112449 65113131 + 0 NA intron (ENSMUSG00000055884.8, intron 14 of 22) protein_coding-intron (ENSMUSG00000055884.8, intron 14 of 22) -12784 ENSMUSG00000112992.1 ENSMUSG00000112992 ENSMUST00000223249 Gm47869 processed_pseudogene Interval_163357 chr9 21036714 21038645 + 0 NA exon (ENSMUSG00000032174.5, exon 10 of 11) protein_coding-exon (ENSMUSG00000032174.5, exon 10 of 11) 103 ENSMUSG00000097535.1 ENSMUSG00000097535 ENSMUST00000180870 Gm26592 antisense Interval_150387 chr7 110067214 110068289 + 0 NA intron (ENSMUSG00000061079.14, intron 1 of 15) protein_coding-intron (ENSMUSG00000061079.14, intron 1 of 15) 6041 ENSMUSG00000061079.14 ENSMUSG00000061079 ENSMUST00000209252 Zfp143 protein_coding Interval_115466 chr4 99182793 99183211 + 0 NA Intergenic Intergenic -11145 ENSMUSG00000028550.15 ENSMUSG00000028550 ENSMUST00000152121 Atg4c protein_coding Interval_65748 chr16 26985940 26986207 + 0 NA intron (ENSMUSG00000068428.7, intron 1 of 4) protein_coding-intron (ENSMUSG00000068428.7, intron 1 of 4) -17828 ENSMUSG00000068428.7 ENSMUSG00000068428 ENSMUST00000231299 Gmnc protein_coding Interval_171365 chr9 117099268 117099490 + 0 NA intron (ENSMUSG00000039607.17, intron 4 of 15) protein_coding-intron (ENSMUSG00000039607.17, intron 2 of 12) 33852 ENSMUSG00000092516.1 ENSMUSG00000092516 ENSMUST00000174520 Gm20397 processed_pseudogene Interval_70321 chr17 8463328 8464071 + 0 NA Intergenic Intergenic 28288 ENSMUSG00000062327.10 ENSMUSG00000062327 ENSMUST00000177118 T protein_coding Interval_64177 chr16 8863910 8865098 + 0 NA Intergenic Intergenic 8667 ENSMUSG00000087982.1 ENSMUSG00000087982 ENSMUST00000157357 Gm22224 rRNA Interval_63167 chr15 99510460 99510669 + 0 NA exon (ENSMUSG00000023011.8, exon 11 of 11) protein_coding-exon (ENSMUSG00000023011.8, exon 11 of 11) 113 ENSMUSG00000023011.8 ENSMUSG00000023011 ENSMUST00000230603 Faim2 protein_coding Interval_43809 chr13 36766915 36767188 + 0 NA Intergenic Intergenic -31920 ENSMUSG00000039114.16 ENSMUSG00000039114 ENSMUST00000224960 Nrn1 protein_coding Interval_26512 chr11 58290135 58290781 + 0 NA intron (ENSMUSG00000069873.4, intron 5 of 6) protein_coding-intron (ENSMUSG00000069873.4, intron 5 of 6) 15398 ENSMUSG00000069873.4 ENSMUSG00000069873 ENSMUST00000208022 4930438A08Rik protein_coding Interval_65469 chr16 22531034 22532736 + 0 NA TTS (ENSMUSG00000099071.1) miRNA-TTS (ENSMUSG00000099071.1) 299 ENSMUSG00000099071.1 ENSMUSG00000099071 ENSMUST00000185103 Mir8095 miRNA Interval_31560 chr11 101364804 101365069 + 0 NA Intergenic Intergenic -1777 ENSMUSG00000118571.1 ENSMUSG00000118571 ENSMUST00000239064 AL590969.1 unprocessed_pseudogene Interval_136095 chr6 50812541 50813054 + 0 NA intron (ENSMUSG00000107667.2, intron 4 of 4) lincRNA-intron (ENSMUSG00000107667.2, intron 2 of 2) -9766 ENSMUSG00000107978.1 ENSMUSG00000107978 ENSMUST00000204514 Gm44109 lincRNA Interval_87095 chr19 46073157 46073991 + 0 NA TTS (ENSMUSG00000055491.14) protein_coding-TTS (ENSMUSG00000055491.14) -2415 ENSMUSG00000015176.11 ENSMUSG00000015176 ENSMUST00000224490 Nolc1 protein_coding Interval_95448 chr2 109544069 109544307 + 0 NA Intergenic Intergenic 67185 ENSMUSG00000081746.2 ENSMUSG00000081746 ENSMUST00000117315 Gm13925 unprocessed_pseudogene Interval_113557 chr4 56644070 56644464 + 0 NA Intergenic Intergenic 34768 ENSMUSG00000077663.1 ENSMUSG00000077663 ENSMUST00000104475 Gm26144 snoRNA Interval_90718 chr2 32088541 32089140 + 0 NA Intergenic Intergenic -3983 ENSMUSG00000050592.8 ENSMUSG00000050592 ENSMUST00000143795 Fam78a protein_coding Interval_109451 chr3 142530077 142531078 + 0 NA intron (ENSMUSG00000040253.15, intron 1 of 10) protein_coding-intron (ENSMUSG00000040253.15, intron 1 of 10) 235 ENSMUSG00000040253.15 ENSMUSG00000040253 ENSMUST00000045097 Gbp7 protein_coding Interval_13937 chr10 24825971 24826882 + 0 NA intron (ENSMUSG00000019989.8, intron 1 of 5) protein_coding-intron (ENSMUSG00000019989.8, intron 2 of 24) 9746 ENSMUSG00000019989.8 ENSMUSG00000019989 ENSMUST00000220209 Enpp3 protein_coding Interval_20477 chr10 117827789 117828412 + 0 NA intron (ENSMUSG00000052681.8, intron 1 of 7) protein_coding-intron (ENSMUSG00000052681.8, intron 1 of 7) -9560 ENSMUSG00000052681.8 ENSMUSG00000052681 ENSMUST00000220214 Rap1b protein_coding Interval_12641 chr10 4088547 4089316 + 0 NA intron (ENSMUSG00000040675.17, intron 22 of 27) protein_coding-intron (ENSMUSG00000040675.17, intron 22 of 27) -15382 ENSMUSG00000065792.1 ENSMUSG00000065792 ENSMUST00000083858 Gm25515 snRNA Interval_137846 chr6 82904759 82905232 + 0 NA intron (ENSMUSG00000109076.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000109076.1, intron 1 of 1) -6895 ENSMUSG00000109076.1 ENSMUSG00000109076 ENSMUST00000208233 Gm45145 lincRNA Interval_82107 chr18 67774509 67775603 + 0 NA promoter-TSS (ENSMUSG00000097835.1) bidirectional_promoter_lncRNA-promoter-TSS (ENSMUSG00000097835.1) 81 ENSMUSG00000079614.4 ENSMUSG00000079614 ENSMUST00000237700 Seh1l protein_coding Interval_127447 chr5 104002578 104003731 + 0 NA exon (ENSMUSG00000029311.16, exon 5 of 5) protein_coding-exon (ENSMUSG00000029311.16, exon 5 of 5) 13784 ENSMUSG00000082527.1 ENSMUSG00000082527 ENSMUST00000122390 Gm8200 processed_pseudogene Interval_64390 chr16 11054368 11055428 + 0 NA intron (ENSMUSG00000022500.15, intron 1 of 2) protein_coding-intron (ENSMUSG00000022500.15, intron 1 of 2) -6047 ENSMUSG00000037972.7 ENSMUSG00000037972 ENSMUST00000089011 Snn protein_coding Interval_158299 chr8 80924032 80924236 + 0 NA Intergenic Intergenic -9543 ENSMUSG00000098223.1 ENSMUSG00000098223 ENSMUST00000182279 Gm4891 processed_pseudogene Interval_128843 chr5 115553118 115554277 + 0 NA TTS (ENSMUSG00000029528.19) protein_coding-TTS (ENSMUSG00000029528.19) -5840 ENSMUSG00000067274.10 ENSMUSG00000067274 ENSMUST00000155584 Rplp0 protein_coding Interval_121920 chr5 9677733 9677924 + 0 NA intron (ENSMUSG00000003974.6, intron 1 of 5) protein_coding-intron (ENSMUSG00000003974.6, intron 1 of 5) 47342 ENSMUSG00000003974.6 ENSMUSG00000003974 ENSMUST00000004076 Grm3 protein_coding Interval_44970 chr13 51050674 51051071 + 0 NA Intergenic Intergenic 36786 ENSMUSG00000084609.2 ENSMUSG00000084609 ENSMUST00000122660 Gm22199 misc_RNA Interval_4758 chr1 78422344 78422810 + 0 NA intron (ENSMUSG00000026245.16, intron 17 of 17) protein_coding-intron (ENSMUSG00000026245.16, intron 17 of 17) -10775 ENSMUSG00000101798.1 ENSMUSG00000101798 ENSMUST00000186625 Gm28995 unprocessed_pseudogene Interval_32278 chr11 106664005 106664451 + 0 NA promoter-TSS (ENSMUSG00000020717.19) protein_coding-promoter-TSS (ENSMUSG00000020717.19) -902 ENSMUSG00000020717.19 ENSMUSG00000020717 ENSMUST00000124958 Pecam1 protein_coding Interval_97053 chr2 130805848 130806813 + 0 NA exon (ENSMUSG00000027309.18, exon 7 of 7) protein_coding-exon (ENSMUSG00000027309.18, exon 7 of 7) -2348 ENSMUSG00000089662.1 ENSMUSG00000089662 ENSMUST00000120631 Gm14057 transcribed_processed_pseudogene Interval_102807 chr3 31209379 31210156 + 0 NA intron (ENSMUSG00000069072.9, intron 7 of 7) protein_coding-intron (ENSMUSG00000069072.9, intron 7 of 7) 48627 ENSMUSG00000069072.9 ENSMUSG00000069072 ENSMUST00000108245 Slc7a14 protein_coding Interval_135750 chr6 46801250 46801444 + 0 NA intron (ENSMUSG00000039419.17, intron 14 of 23) protein_coding-intron (ENSMUSG00000039419.17, intron 14 of 23) 15394 ENSMUSG00000108217.1 ENSMUSG00000108217 ENSMUST00000204002 Gm43883 TEC Interval_56251 chr14 115017811 115018110 + 0 NA Intergenic Intergenic -24919 ENSMUSG00000089726.2 ENSMUSG00000089726 ENSMUST00000134140 Mir17hg lincRNA Interval_62753 chr15 96640691 96643446 + 0 NA promoter-TSS (ENSMUSG00000023169.15) protein_coding-promoter-TSS (ENSMUSG00000023169.15) 145 ENSMUSG00000023169.15 ENSMUSG00000023169 ENSMUST00000229253 Slc38a1 protein_coding Interval_53472 chr14 57716084 57716903 + 0 NA intron (ENSMUSG00000114942.1, intron 2 of 8) protein_coding-intron (ENSMUSG00000021959.16, intron 2 of 7) 18480 ENSMUSG00000092358.1 ENSMUSG00000092358 ENSMUST00000172474 Gm20430 processed_pseudogene Interval_58332 chr15 32509326 32509537 + 0 NA intron (ENSMUSG00000022231.10, intron 5 of 7) protein_coding-intron (ENSMUSG00000022231.10, intron 5 of 22) 114074 ENSMUSG00000115063.1 ENSMUSG00000115063 ENSMUST00000227807 4930465K09Rik antisense Interval_92259 chr2 57386445 57386665 + 0 NA Intergenic Intergenic 39154 ENSMUSG00000084338.5 ENSMUSG00000084338 ENSMUST00000121893 Gm13531 processed_pseudogene Interval_133275 chr5 151025450 151025814 + 0 NA Intergenic Intergenic -16331 ENSMUSG00000106963.1 ENSMUSG00000106963 ENSMUST00000201408 Gm8675 processed_pseudogene Interval_114777 chr4 85198178 85199057 + 0 NA Intergenic Intergenic 22090 ENSMUSG00000084267.1 ENSMUSG00000084267 ENSMUST00000119153 Gm12417 processed_pseudogene Interval_141381 chr6 127853763 127854977 + 0 NA Intergenic Intergenic 5149 ENSMUSG00000088177.1 ENSMUSG00000088177 ENSMUST00000157552 Gm23098 misc_RNA Interval_149844 chr7 101956626 101957455 + 0 NA TTS (ENSMUSG00000109872.1) processed_pseudogene-TTS (ENSMUSG00000109872.1) 245 ENSMUSG00000109872.1 ENSMUSG00000109872 ENSMUST00000210566 Gm45312 processed_pseudogene Interval_119788 chr4 139993245 139993870 + 0 NA Intergenic Intergenic -25531 ENSMUSG00000078234.6 ENSMUSG00000078234 ENSMUST00000105031 Klhdc7a protein_coding Interval_148753 chr7 85542004 85543463 + 0 NA Intergenic Intergenic -20354 ENSMUSG00000091205.3 ENSMUSG00000091205 ENSMUST00000172338 Vmn2r71 protein_coding Interval_133493 chr6 5791351 5791577 + 0 NA intron (ENSMUSG00000029757.16, intron 5 of 16) protein_coding-intron (ENSMUSG00000029757.16, intron 4 of 15) 34045 ENSMUSG00000029757.16 ENSMUSG00000029757 ENSMUST00000203520 Dync1i1 protein_coding Interval_49112 chr13 108136120 108136898 + 0 NA intron (ENSMUSG00000068184.7, intron 1 of 3) protein_coding-intron (ENSMUSG00000068184.7, intron 1 of 3) 21975 ENSMUSG00000068184.7 ENSMUSG00000068184 ENSMUST00000225830 Ndufaf2 protein_coding Interval_8077 chr1 135584771 135585948 + 0 NA promoter-TSS (ENSMUSG00000009418.16) protein_coding-promoter-TSS (ENSMUSG00000009418.16) 586 ENSMUSG00000054412.5 ENSMUSG00000054412 ENSMUST00000067468 Gm4793 antisense Interval_170418 chr9 107786637 107786915 + 0 NA TTS (ENSMUSG00000032582.14) protein_coding-TTS (ENSMUSG00000032582.14) 23968 ENSMUSG00000102899.1 ENSMUSG00000102899 ENSMUST00000194573 Gm37850 antisense Interval_30718 chr11 96104845 96105063 + 0 NA intron (ENSMUSG00000006056.13, intron 2 of 6) protein_coding-intron (ENSMUSG00000006056.13, intron 2 of 5) 7008 ENSMUSG00000006056.13 ENSMUSG00000006056 ENSMUST00000097162 Calcoco2 protein_coding Interval_74714 chr17 56119745 56120842 + 0 NA exon (ENSMUSG00000037095.8, exon 2 of 2) protein_coding-exon (ENSMUSG00000037095.8, exon 2 of 2) 1708 ENSMUSG00000037095.8 ENSMUSG00000037095 ENSMUST00000041357 Lrg1 protein_coding Interval_84837 chr19 17346054 17347338 + 0 NA intron (ENSMUSG00000038843.18, intron 1 of 2) protein_coding-intron (ENSMUSG00000038843.18, intron 1 of 1) 26148 ENSMUSG00000038843.18 ENSMUSG00000038843 ENSMUST00000174137 Gcnt1 protein_coding Interval_30134 chr11 89578664 89579785 + 0 NA intron (ENSMUSG00000047773.15, intron 4 of 21) protein_coding-intron (ENSMUSG00000047773.15, intron 2 of 16) 262042 ENSMUSG00000047773.15 ENSMUSG00000047773 ENSMUST00000207171 Ankfn1 protein_coding Interval_172661 chrX 41681344 41681575 + 0 NA Intergenic Intergenic 4918 ENSMUSG00000082966.1 ENSMUSG00000082966 ENSMUST00000119873 Gm14614 processed_pseudogene Interval_54401 chr14 68453201 68453468 + 0 NA Intergenic Intergenic -8297 ENSMUSG00000114396.1 ENSMUSG00000114396 ENSMUST00000225482 Gm31227 lincRNA Interval_114101 chr4 63449819 63450815 + 0 NA intron (ENSMUSG00000039137.18, intron 2 of 2) protein_coding-intron (ENSMUSG00000039137.18, intron 3 of 11) -16995 ENSMUSG00000039137.18 ENSMUSG00000039137 ENSMUST00000140720 Whrn protein_coding Interval_46649 chr13 68073515 68073756 + 0 NA Intergenic Intergenic -13027 ENSMUSG00000113365.1 ENSMUSG00000113365 ENSMUST00000222859 Gm48424 unprocessed_pseudogene Interval_106466 chr3 96541509 96542047 + 0 NA Intergenic Intergenic 16606 ENSMUSG00000038403.10 ENSMUSG00000038403 ENSMUST00000049208 Hjv protein_coding Interval_96997 chr2 130365053 130365997 + 0 NA exon (ENSMUSG00000053552.14, exon 15 of 17) protein_coding-exon (ENSMUSG00000053552.14, exon 15 of 17) 19804 ENSMUSG00000083483.3 ENSMUSG00000083483 ENSMUST00000117531 Gm14044 processed_pseudogene Interval_44233 chr13 42575433 42576119 + 0 NA Intergenic Intergenic 6313 ENSMUSG00000113367.1 ENSMUSG00000113367 ENSMUST00000222839 Gm47125 processed_pseudogene Interval_30417 chr11 94252040 94252233 + 0 NA Intergenic Intergenic -6131 ENSMUSG00000044177.4 ENSMUSG00000044177 ENSMUST00000131352 Wfikkn2 protein_coding Interval_89589 chr2 23049699 23050245 + 0 NA Intergenic Intergenic -9753 ENSMUSG00000058835.14 ENSMUSG00000058835 ENSMUST00000154162 Abi1 protein_coding Interval_85547 chr19 28375588 28375813 + 0 NA intron (ENSMUSG00000052942.13, intron 4 of 10) protein_coding-intron (ENSMUSG00000052942.13, intron 3 of 9) -75275 ENSMUSG00000052942.13 ENSMUSG00000052942 ENSMUST00000161328 Glis3 protein_coding Interval_173364 chrX 85068902 85069382 + 0 NA intron (ENSMUSG00000045103.19, intron 35 of 50) protein_coding-intron (ENSMUSG00000045103.19, intron 2 of 17) 167424 ENSMUSG00000081379.1 ENSMUSG00000081379 ENSMUST00000118249 Gm14771 processed_pseudogene Interval_169787 chr9 101362871 101363792 + 0 NA Intergenic Intergenic 21137 ENSMUSG00000101941.1 ENSMUSG00000101941 ENSMUST00000190949 Gm28979 lincRNA Interval_123608 chr5 33758985 33761105 + 0 NA TTS (ENSMUSG00000059064.8) processed_pseudogene-TTS (ENSMUSG00000059064.8) 679 ENSMUSG00000059064.8 ENSMUSG00000059064 ENSMUST00000131139 Gm10059 processed_pseudogene Interval_152099 chr7 129306898 129308029 + 0 NA intron (ENSMUSG00000070366.5, intron 2 of 2) protein_coding-intron (ENSMUSG00000070366.5, intron 1 of 6) 50416 ENSMUSG00000070366.5 ENSMUSG00000070366 ENSMUST00000205896 Plpp4 protein_coding Interval_148890 chr7 89864933 89865491 + 0 NA TTS (ENSMUSG00000039391.11) protein_coding-TTS (ENSMUSG00000039391.11) 37994 ENSMUSG00000109150.1 ENSMUSG00000109150 ENSMUST00000207900 Gm45793 TEC Interval_82655 chr18 75689342 75689635 + 0 NA intron (ENSMUSG00000052928.9, intron 1 of 11) protein_coding-intron (ENSMUSG00000052928.9, intron 1 of 11) -52215 ENSMUSG00000052928.9 ENSMUSG00000052928 ENSMUST00000235147 Ctif protein_coding Interval_147068 chr7 60617047 60617410 + 0 NA Intergenic Intergenic -26663 ENSMUSG00000109447.1 ENSMUSG00000109447 ENSMUST00000208725 Gm3198 processed_pseudogene Interval_33768 chr11 118379283 118380243 + 0 NA Intergenic Intergenic 18388 ENSMUSG00000033880.11 ENSMUSG00000033880 ENSMUST00000127054 Lgals3bp protein_coding Interval_22675 chr11 12835370 12835675 + 0 NA Intergenic Intergenic 102416 ENSMUSG00000083859.1 ENSMUSG00000083859 ENSMUST00000118518 Gm12003 processed_pseudogene Interval_117100 chr4 119531764 119532257 + 0 NA intron (ENSMUSG00000087385.8, intron 3 of 3) protein_coding-intron (ENSMUSG00000087385.8, intron 3 of 3) 4010 ENSMUSG00000094494.1 ENSMUSG00000094494 ENSMUST00000178059 Rnu6-ps2 snRNA Interval_121949 chr5 12138954 12140221 + 0 NA Intergenic Intergenic 5374 ENSMUSG00000105155.1 ENSMUSG00000105155 ENSMUST00000198917 Gm42910 TEC Interval_154765 chr8 23194506 23195671 + 0 NA intron (ENSMUSG00000031545.6, intron 1 of 6) protein_coding-intron (ENSMUSG00000031545.6, intron 1 of 12) 13257 ENSMUSG00000031545.6 ENSMUSG00000031545 ENSMUST00000209507 Gpat4 protein_coding Interval_173916 chrX 111617231 111617606 + 0 NA intron (ENSMUSG00000034551.12, intron 5 of 9) protein_coding-intron (ENSMUSG00000034551.12, intron 4 of 8) 45719 ENSMUSG00000083898.2 ENSMUSG00000083898 ENSMUST00000119729 Gm7340 processed_pseudogene Interval_34726 chr12 8973480 8975463 + 0 NA promoter-TSS (ENSMUSG00000066643.12) protein_coding-promoter-TSS (ENSMUSG00000066643.12) 412 ENSMUSG00000066643.12 ENSMUSG00000066643 ENSMUST00000159735 Wdr35 protein_coding Interval_97510 chr2 138257959 138258168 + 0 NA intron (ENSMUSG00000062098.11, intron 1 of 3) protein_coding-intron (ENSMUSG00000062098.11, intron 1 of 4) 1401 ENSMUSG00000062098.11 ENSMUSG00000062098 ENSMUST00000075410 Btbd3 protein_coding Interval_31286 chr11 99336323 99336598 + 0 NA exon (ENSMUSG00000075570.2, exon 2 of 7) protein_coding-exon (ENSMUSG00000075570.2, exon 2 of 7) 1505 ENSMUSG00000075570.2 ENSMUSG00000075570 ENSMUST00000100482 Krt26 protein_coding Interval_137875 chr6 83094748 83095128 + 0 NA Intergenic Intergenic -4551 ENSMUSG00000095323.1 ENSMUSG00000095323 ENSMUST00000175223 Mir3470a miRNA Interval_157358 chr8 69847266 69848202 + 0 NA promoter-TSS (ENSMUSG00000031860.17) protein_coding-promoter-TSS (ENSMUSG00000031860.17) 15097 ENSMUSG00000031860.17 ENSMUSG00000031860 ENSMUST00000135952 Pbx4 protein_coding Interval_63757 chr15 103258077 103258938 + 0 NA promoter-TSS (ENSMUSG00000058794.12) protein_coding-promoter-TSS (ENSMUSG00000058794.12) -6991 ENSMUSG00000058794.12 ENSMUSG00000058794 ENSMUST00000132438 Nfe2 protein_coding Interval_149490 chr7 99073645 99074330 + 0 NA intron (ENSMUSG00000035354.9, intron 6 of 11) protein_coding-intron (ENSMUSG00000035354.9, intron 5 of 14) -16245 ENSMUSG00000109492.1 ENSMUSG00000109492 ENSMUST00000208990 Gm33882 processed_pseudogene Interval_15953 chr10 59586660 59587693 + 0 NA intron (ENSMUSG00000009647.13, intron 3 of 3) protein_coding-intron (ENSMUSG00000009647.13, intron 1 of 7) -28888 ENSMUSG00000071280.2 ENSMUSG00000071280 ENSMUST00000238281 Gm10322 antisense Interval_80542 chr18 43663573 43664127 + 0 NA intron (ENSMUSG00000024502.10, intron 1 of 1) protein_coding-intron (ENSMUSG00000024502.10, intron 1 of 21) 73707 ENSMUSG00000024503.3 ENSMUSG00000024503 ENSMUST00000025381 Spink1 protein_coding Interval_56399 chr14 118490273 118491535 + 0 NA intron (ENSMUSG00000032849.14, intron 28 of 29) protein_coding-intron (ENSMUSG00000032849.14, intron 29 of 30) -73168 ENSMUSG00000115075.1 ENSMUSG00000115075 ENSMUST00000227627 Gm49033 processed_pseudogene Interval_136371 chr6 53880343 53882485 + 0 NA intron (ENSMUSG00000052955.5, intron 12 of 12) protein_coding-intron (ENSMUSG00000052955.5, intron 12 of 12) -9266 ENSMUSG00000094527.1 ENSMUSG00000094527 ENSMUST00000178568 Gm22910 snoRNA Interval_95682 chr2 114095505 114096024 + 0 NA Intergenic Intergenic 40517 ENSMUSG00000092397.7 ENSMUSG00000092397 ENSMUST00000155185 C130080G10Rik antisense Interval_75885 chr17 72658894 72659339 + 0 NA Intergenic Intergenic 41329 ENSMUSG00000098193.1 ENSMUSG00000098193 ENSMUST00000183172 Gm26963 processed_pseudogene Interval_28683 chr11 77737432 77739374 + 0 NA intron (ENSMUSG00000037857.16, intron 3 of 3) protein_coding-intron (ENSMUSG00000037857.16, intron 3 of 3) -8638 ENSMUSG00000081924.1 ENSMUSG00000081924 ENSMUST00000117231 Gm11191 processed_pseudogene Interval_94128 chr2 84551802 84552391 + 0 NA Intergenic Intergenic -12649 ENSMUSG00000118570.1 ENSMUSG00000118570 ENSMUST00000238875 AL928616.2 unprocessed_pseudogene Interval_173285 chrX 76261039 76262033 + 0 NA promoter-TSS (ENSMUSG00000086207.1) antisense-promoter-TSS (ENSMUSG00000086207.1) -144 ENSMUSG00000086207.1 ENSMUSG00000086207 ENSMUST00000140450 Gm14717 antisense Interval_131059 chr5 134831579 134831944 + 0 NA Intergenic Intergenic 74972 ENSMUSG00000040576.8 ENSMUSG00000040576 ENSMUST00000047305 Tmem270 protein_coding Interval_158782 chr8 86459009 86459573 + 0 NA Intergenic Intergenic 107299 ENSMUSG00000036872.16 ENSMUSG00000036872 ENSMUST00000152438 Abcc12 protein_coding Interval_162891 chr9 11693368 11694273 + 0 NA Intergenic Intergenic -108975 ENSMUSG00000111503.1 ENSMUSG00000111503 ENSMUST00000214628 Gm47034 lincRNA Interval_17665 chr10 78717562 78718872 + 0 NA promoter-TSS (ENSMUSG00000005355.9) protein_coding-promoter-TSS (ENSMUSG00000005355.9) -811 ENSMUSG00000005355.9 ENSMUSG00000005355 ENSMUST00000219237 Casp14 protein_coding Interval_128645 chr5 114482608 114482988 + 0 NA Intergenic Intergenic 30378 ENSMUSG00000041939.14 ENSMUSG00000041939 ENSMUST00000139420 Mvk protein_coding Interval_133577 chr6 6989165 6990725 + 0 NA intron (ENSMUSG00000042505.6, intron 1 of 1) protein_coding-intron (ENSMUSG00000042505.6, intron 1 of 1) 33938 ENSMUSG00000042505.6 ENSMUSG00000042505 ENSMUST00000123848 Sdhaf3 protein_coding Interval_19849 chr10 110415807 110415976 + 0 NA intron (ENSMUSG00000020181.18, intron 1 of 40) protein_coding-intron (ENSMUSG00000020181.18, intron 1 of 4) 36383 ENSMUSG00000112548.1 ENSMUSG00000112548 ENSMUST00000219876 Gm47338 TEC Interval_17347 chr10 76018946 76019836 + 0 NA Intergenic Intergenic 10465 ENSMUSG00000098817.1 ENSMUSG00000098817 ENSMUST00000184957 Mir6409 miRNA Interval_68737 chr16 85240668 85240970 + 0 NA Intergenic Intergenic 71970 ENSMUSG00000098604.1 ENSMUSG00000098604 ENSMUST00000184264 Gm27295 snoRNA Interval_71677 chr17 25338422 25338688 + 0 NA Intergenic Intergenic 6972 ENSMUSG00000024173.11 ENSMUSG00000024173 ENSMUST00000146856 Tpsab1 protein_coding Interval_65993 chr16 30772552 30773505 + 0 NA Intergenic Intergenic 20227 ENSMUSG00000116570.1 ENSMUSG00000116570 ENSMUST00000231445 Gm49754 lincRNA Interval_169602 chr9 99395531 99395993 + 0 NA intron (ENSMUSG00000032470.17, intron 2 of 3) protein_coding-intron (ENSMUSG00000032470.17, intron 2 of 5) -1067 ENSMUSG00000032470.17 ENSMUSG00000032470 ENSMUST00000123771 Mras protein_coding Interval_53719 chr14 61143053 61144411 + 0 NA intron (ENSMUSG00000048279.19, intron 1 of 8) protein_coding-intron (ENSMUSG00000048279.19, intron 1 of 9) -49741 ENSMUSG00000048279.19 ENSMUSG00000048279 ENSMUST00000229692 Sacs protein_coding Interval_97428 chr2 136124444 136124610 + 0 NA intron (ENSMUSG00000039913.12, intron 3 of 9) protein_coding-intron (ENSMUSG00000039913.12, intron 4 of 10) -12479 ENSMUSG00000085383.1 ENSMUSG00000085383 ENSMUST00000137802 Gm14218 antisense Interval_155980 chr8 41406170 41406706 + 0 NA intron (ENSMUSG00000031590.8, intron 5 of 8) protein_coding-intron (ENSMUSG00000031590.8, intron 5 of 8) 6484 ENSMUSG00000031590.8 ENSMUSG00000031590 ENSMUST00000210873 Frg1 protein_coding Interval_3471 chr1 58668683 58668928 + 0 NA intron (ENSMUSG00000047528.13, intron 8 of 13) protein_coding-intron (ENSMUSG00000047528.13, intron 9 of 14) 13860 ENSMUSG00000102059.1 ENSMUSG00000102059 ENSMUST00000188643 Gm20257 transcribed_unprocessed_pseudogene Interval_92592 chr2 61018508 61018760 + 0 NA Intergenic Intergenic 12336 ENSMUSG00000083334.1 ENSMUSG00000083334 ENSMUST00000118519 Gm13579 processed_pseudogene Interval_134877 chr6 33027440 33027727 + 0 NA intron (ENSMUSG00000053768.13, intron 2 of 7) protein_coding-intron (ENSMUSG00000053768.13, intron 2 of 7) -10885 ENSMUSG00000085847.1 ENSMUSG00000085847 ENSMUST00000138298 Gm14540 antisense Interval_1108 chr1 15789416 15789636 + 0 NA Intergenic Intergenic -18115 ENSMUSG00000025925.14 ENSMUSG00000025925 ENSMUST00000188684 Terf1 protein_coding Interval_45147 chr13 52711767 52712529 + 0 NA Intergenic Intergenic 45057 ENSMUSG00000113737.1 ENSMUSG00000113737 ENSMUST00000223209 BB123696 lincRNA Interval_60371 chr15 73209356 73210850 + 0 NA promoter-TSS (ENSMUSG00000022607.18) protein_coding-promoter-TSS (ENSMUSG00000022607.18) -32256 ENSMUSG00000036698.11 ENSMUSG00000036698 ENSMUST00000230464 Ago2 protein_coding Interval_6286 chr1 105423668 105425229 + 0 NA intron (ENSMUSG00000101214.1, intron 1 of 5) sense_overlapping-intron (ENSMUSG00000101214.1, intron 1 of 5) -31523 ENSMUSG00000067017.5 ENSMUSG00000067017 ENSMUST00000086725 Capza1-ps1 pseudogene Interval_81431 chr18 60712214 60713624 + 0 NA TTS (ENSMUSG00000054008.9) protein_coding-TTS (ENSMUSG00000054008.9) 20231 ENSMUSG00000054008.9 ENSMUSG00000054008 ENSMUST00000237070 Ndst1 protein_coding Interval_87832 chr19 56345909 56346156 + 0 NA intron (ENSMUSG00000049134.15, intron 25 of 36) protein_coding-intron (ENSMUSG00000049134.15, intron 25 of 40) -18230 ENSMUSG00000090990.1 ENSMUSG00000090990 ENSMUST00000163160 Gm17197 antisense Interval_51823 chr14 32512953 32514065 + 0 NA promoter-TSS (ENSMUSG00000054051.7) protein_coding-promoter-TSS (ENSMUSG00000054051.7) -39066 ENSMUSG00000054051.7 ENSMUSG00000054051 ENSMUST00000228549 Ercc6 protein_coding Interval_1376 chr1 21096924 21098044 + 0 NA Intergenic Intergenic 17370 ENSMUSG00000099971.1 ENSMUSG00000099971 ENSMUST00000186612 Gm28287 antisense Interval_120517 chr4 149099081 149099967 + 0 NA intron (ENSMUSG00000028975.16, intron 1 of 3) protein_coding-intron (ENSMUSG00000028975.16, intron 1 of 8) 291 ENSMUSG00000028975.16 ENSMUSG00000028975 ENSMUST00000148203 Pex14 protein_coding Interval_156402 chr8 47933999 47934231 + 0 NA intron (ENSMUSG00000031563.8, intron 1 of 22) protein_coding-intron (ENSMUSG00000031563.8, intron 1 of 22) 34933 ENSMUSG00000064519.1 ENSMUSG00000064519 ENSMUST00000082585 n-R5s97 rRNA Interval_44043 chr13 40449703 40449949 + 0 NA Intergenic Intergenic -46362 ENSMUSG00000114248.1 ENSMUSG00000114248 ENSMUST00000226074 Gm8352 processed_pseudogene Interval_33491 chr11 116864327 116864746 + 0 NA exon (ENSMUSG00000020818.16, exon 9 of 13) protein_coding-exon (ENSMUSG00000020818.16, exon 9 of 13) 10458 ENSMUSG00000020818.16 ENSMUSG00000020818 ENSMUST00000134106 Mfsd11 protein_coding Interval_108837 chr3 132353385 132353790 + 0 NA Intergenic Intergenic 91961 ENSMUSG00000106280.1 ENSMUSG00000106280 ENSMUST00000198028 Gm42880 lincRNA Interval_150901 chr7 116246302 116247242 + 0 NA intron (ENSMUSG00000045659.18, intron 3 of 18) protein_coding-intron (ENSMUSG00000045659.18, intron 3 of 26) 35971 ENSMUSG00000108650.1 ENSMUSG00000108650 ENSMUST00000205675 Gm44867 sense_intronic Interval_93415 chr2 72935543 72936214 + 0 NA TTS (ENSMUSG00000027109.16) protein_coding-TTS (ENSMUSG00000027109.16) 15109 ENSMUSG00000092851.1 ENSMUSG00000092851 ENSMUST00000175110 Gm25960 miRNA Interval_36381 chr12 42905669 42906134 + 0 NA Intergenic Intergenic 109558 ENSMUSG00000112407.1 ENSMUSG00000112407 ENSMUST00000219475 Gm33340 lincRNA Interval_71240 chr17 21515607 21517268 + 0 NA promoter-TSS (ENSMUSG00000117037.1) transcribed_processed_pseudogene-promoter-TSS (ENSMUSG00000117037.1) -13843 ENSMUSG00000117037.1 ENSMUSG00000117037 ENSMUST00000233488 Gm50433 transcribed_processed_pseudogene Interval_26848 chr11 61038931 61039166 + 0 NA intron (ENSMUSG00000042529.14, intron 1 of 1) protein_coding-intron (ENSMUSG00000042529.14, intron 1 of 1) -26756 ENSMUSG00000042529.14 ENSMUSG00000042529 ENSMUST00000108717 Kcnj12 protein_coding Interval_150348 chr7 109789118 109790367 + 0 NA Intergenic Intergenic -8199 ENSMUSG00000034825.14 ENSMUSG00000034825 ENSMUST00000207400 Nrip3 protein_coding Interval_93194 chr2 71053240 71054436 + 0 NA intron (ENSMUSG00000041975.17, intron 1 of 9) protein_coding-intron (ENSMUSG00000041975.17, intron 1 of 5) -1906 ENSMUSG00000041966.18 ENSMUSG00000041966 ENSMUST00000132619 Dcaf17 protein_coding Interval_50927 chr14 20798727 20799009 + 0 NA Intergenic Intergenic 4629 ENSMUSG00000114241.1 ENSMUSG00000114241 ENSMUST00000224276 Gm30108 lincRNA Interval_23354 chr11 21718831 21719339 + 0 NA intron (ENSMUSG00000020319.9, intron 10 of 17) protein_coding-intron (ENSMUSG00000020319.9, intron 10 of 17) 23956 ENSMUSG00000020319.9 ENSMUSG00000020319 ENSMUST00000128794 Wdpcp protein_coding Interval_1445 chr1 23536899 23537289 + 0 NA Intergenic Intergenic -37493 ENSMUSG00000099503.1 ENSMUSG00000099503 ENSMUST00000191140 Gm28822 lincRNA Interval_170339 chr9 107270824 107272107 + 0 NA intron (ENSMUSG00000032577.16, intron 1 of 7) protein_coding-intron (ENSMUSG00000032577.16, intron 2 of 10) 17879 ENSMUSG00000032577.16 ENSMUSG00000032577 ENSMUST00000141596 Mapkapk3 protein_coding Interval_85578 chr19 28771940 28773552 + 0 NA Intergenic Intergenic -9316 ENSMUSG00000090737.1 ENSMUSG00000090737 ENSMUST00000166459 Gm6788 processed_pseudogene Interval_16225 chr10 61533279 61533468 + 0 NA intron (ENSMUSG00000037151.8, intron 3 of 4) protein_coding-intron (ENSMUSG00000037151.8, intron 3 of 4) -22788 ENSMUSG00000112710.1 ENSMUSG00000112710 ENSMUST00000219782 Gm17829 processed_pseudogene Interval_46334 chr13 64033265 64033515 + 0 NA Intergenic Intergenic 55811 ENSMUSG00000033122.14 ENSMUSG00000033122 ENSMUST00000222810 Hsd17b3 protein_coding Interval_93089 chr2 70029626 70031163 + 0 NA Intergenic Intergenic -8517 ENSMUSG00000086132.1 ENSMUSG00000086132 ENSMUST00000140978 Gm13631 processed_transcript Interval_20973 chr10 122912745 122913612 + 0 NA intron (ENSMUSG00000034613.12, intron 3 of 4) protein_coding-intron (ENSMUSG00000034613.12, intron 8 of 9) 17810 ENSMUSG00000034613.12 ENSMUSG00000034613 ENSMUST00000162969 Ppm1h protein_coding Interval_58131 chr15 28258991 28259424 + 0 NA intron (ENSMUSG00000022262.8, intron 16 of 78) protein_coding-intron (ENSMUSG00000022262.8, intron 16 of 78) 55455 ENSMUSG00000022262.8 ENSMUSG00000022262 ENSMUST00000067048 Dnah5 protein_coding Interval_143514 chr7 11464556 11465005 + 0 NA intron (ENSMUSG00000110095.1, intron 4 of 6) unprocessed_pseudogene-intron (ENSMUSG00000110095.1, intron 4 of 6) 3774 ENSMUSG00000110095.1 ENSMUSG00000110095 ENSMUST00000211575 Gm7207 unprocessed_pseudogene Interval_54372 chr14 67994413 67994943 + 0 NA Intergenic Intergenic 56652 ENSMUSG00000114621.1 ENSMUSG00000114621 ENSMUST00000223853 Gm31107 lincRNA Interval_17683 chr10 79434623 79435939 + 0 NA Intergenic Intergenic -17376 ENSMUSG00000112907.1 ENSMUSG00000112907 ENSMUST00000217947 Gm47015 lincRNA Interval_83013 chr18 80392354 80392620 + 0 NA Intergenic Intergenic -29151 ENSMUSG00000059852.7 ENSMUSG00000059852 ENSMUST00000184366 Kcng2 protein_coding Interval_9608 chr1 160194652 160195651 + 0 NA promoter-TSS (ENSMUSG00000058267.13) protein_coding-promoter-TSS (ENSMUSG00000058267.13) -64 ENSMUSG00000058267.13 ENSMUSG00000058267 ENSMUST00000097193 Mrps14 protein_coding Interval_44266 chr13 43199642 43201645 + 0 NA exon (ENSMUSG00000051335.6, exon 2 of 2) protein_coding-exon (ENSMUSG00000051335.6, exon 2 of 2) -41091 ENSMUSG00000021368.15 ENSMUSG00000021368 ENSMUST00000221095 Tbc1d7 protein_coding Interval_105519 chr3 87200996 87201887 + 0 NA Intergenic Intergenic 6564 ENSMUSG00000074506.4 ENSMUSG00000074506 ENSMUST00000098980 Gm10705 processed_pseudogene Interval_44180 chr13 41642429 41643103 + 0 NA Intergenic Intergenic -6677 ENSMUSG00000054258.9 ENSMUSG00000054258 ENSMUST00000067176 Gm5082 lincRNA Interval_143028 chr6 148687727 148688018 + 0 NA Intergenic Intergenic -9872 ENSMUSG00000084909.1 ENSMUSG00000084909 ENSMUST00000124575 4930528G23Rik lincRNA Interval_116059 chr4 107321009 107321755 + 0 NA TTS (ENSMUSG00000057375.13) protein_coding-TTS (ENSMUSG00000057375.13) 6250 ENSMUSG00000057375.13 ENSMUSG00000057375 ENSMUST00000143106 Yipf1 protein_coding Interval_39146 chr12 85437220 85437426 + 0 NA Intergenic Intergenic -1074 ENSMUSG00000113940.1 ENSMUSG00000113940 ENSMUST00000220805 Gm40477 lincRNA Interval_159536 chr8 95312784 95313546 + 0 NA TTS (ENSMUSG00000090206.8) protein_coding-TTS (ENSMUSG00000090206.8) 1563 ENSMUSG00000090206.8 ENSMUSG00000090206 ENSMUST00000162294 Tepp protein_coding Interval_57241 chr15 8086655 8087674 + 0 NA intron (ENSMUSG00000039828.7, intron 3 of 17) protein_coding-intron (ENSMUSG00000039828.7, intron 3 of 17) 12045 ENSMUSG00000039828.7 ENSMUSG00000039828 ENSMUST00000227371 Wdr70 protein_coding Interval_82270 chr18 69833456 69833959 + 0 NA Intergenic Intergenic -55662 ENSMUSG00000064706.1 ENSMUSG00000064706 ENSMUST00000082772 Gm22508 misc_RNA Interval_123989 chr5 37047061 37048258 + 0 NA intron (ENSMUSG00000063646.18, intron 1 of 1) protein_coding-intron (ENSMUSG00000063646.18, intron 1 of 5) -6013 ENSMUSG00000097686.1 ENSMUSG00000097686 ENSMUST00000180816 Gm26647 antisense Interval_122120 chr5 17455072 17455395 + 0 NA Intergenic Intergenic -20865 ENSMUSG00000058643.3 ENSMUSG00000058643 ENSMUST00000076099 Speer4f1 protein_coding Interval_63617 chr15 102376417 102378174 + 0 NA Intergenic Intergenic 3415 ENSMUSG00000088286.1 ENSMUSG00000088286 ENSMUST00000157661 Gm23590 snRNA Interval_64872 chr16 16854899 16856614 + 0 NA Intergenic Intergenic 3441 ENSMUSG00000116676.1 ENSMUSG00000116676 ENSMUST00000231247 Gm5768 processed_pseudogene Interval_80624 chr18 44738634 44740770 + 0 NA intron (ENSMUSG00000071856.10, intron 2 of 18) protein_coding-intron (ENSMUSG00000071856.10, intron 2 of 18) -77418 ENSMUSG00000071856.10 ENSMUSG00000071856 ENSMUST00000201270 Mcc protein_coding Interval_52159 chr14 37388017 37388467 + 0 NA Intergenic Intergenic 49378 ENSMUSG00000077786.1 ENSMUSG00000077786 ENSMUST00000104598 Gm23909 snoRNA Interval_143941 chr7 18261720 18262633 + 0 NA intron (ENSMUSG00000054005.4, intron 2 of 4) protein_coding-intron (ENSMUSG00000054005.4, intron 2 of 4) 16829 ENSMUSG00000054005.4 ENSMUSG00000054005 ENSMUST00000066780 Mill1 protein_coding Interval_170734 chr9 110400470 110401397 + 0 NA intron (ENSMUSG00000036057.11, intron 1 of 24) protein_coding-intron (ENSMUSG00000036057.11, intron 1 of 24) -14686 ENSMUSG00000036057.11 ENSMUSG00000036057 ENSMUST00000199254 Ptpn23 protein_coding Interval_158632 chr8 84871284 84873244 + 0 NA promoter-TSS (ENSMUSG00000003824.12) protein_coding-promoter-TSS (ENSMUSG00000003824.12) 153 ENSMUSG00000003824.12 ENSMUSG00000003824 ENSMUST00000144466 Syce2 protein_coding Interval_44996 chr13 51229038 51229471 + 0 NA Intergenic Intergenic -23143 ENSMUSG00000113521.1 ENSMUSG00000113521 ENSMUST00000222129 Gm29787 processed_pseudogene Interval_109892 chr3 149668619 149668816 + 0 NA Intergenic Intergenic -8321 ENSMUSG00000104785.1 ENSMUSG00000104785 ENSMUST00000197948 Gm31121 lincRNA Interval_145426 chr7 34695798 34696691 + 0 NA exon (ENSMUSG00000060402.8, exon 1 of 1) protein_coding-intron (ENSMUSG00000060402.8, intron 2 of 2) -22245 ENSMUSG00000087127.1 ENSMUSG00000087127 ENSMUST00000126294 Gm12756 lincRNA Interval_60136 chr15 66133782 66134131 + 0 NA intron (ENSMUSG00000056258.9, intron 1 of 14) protein_coding-intron (ENSMUSG00000056258.9, intron 1 of 14) 59404 ENSMUSG00000099013.1 ENSMUSG00000099013 ENSMUST00000184492 Gm27153 antisense Interval_46592 chr13 67430575 67431523 + 0 NA intron (ENSMUSG00000069206.14, intron 1 of 1) protein_coding-intron (ENSMUSG00000069206.14, intron 4 of 4) -9641 ENSMUSG00000055560.8 ENSMUSG00000055560 ENSMUST00000224496 Zfp459 protein_coding Interval_123047 chr5 29210121 29210484 + 0 NA intron (ENSMUSG00000029130.12, intron 5 of 5) protein_coding-intron (ENSMUSG00000029130.12, intron 8 of 9) -7422 ENSMUSG00000089975.2 ENSMUSG00000089975 ENSMUST00000162836 Gm7420 transcribed_processed_pseudogene Interval_118762 chr4 133592089 133593225 + 0 NA TTS (ENSMUSG00000028848.13) protein_coding-TTS (ENSMUSG00000028848.13) 8229 ENSMUSG00000028848.13 ENSMUSG00000028848 ENSMUST00000148909 Gpn2 protein_coding Interval_157583 chr8 71536978 71537889 + 0 NA promoter-TSS (ENSMUSG00000046718.8) protein_coding-promoter-TSS (ENSMUSG00000046718.8) -102 ENSMUSG00000046718.8 ENSMUSG00000046718 ENSMUST00000212386 Bst2 protein_coding Interval_75429 chr17 66507179 66507926 + 0 NA intron (ENSMUSG00000023460.13, intron 1 of 5) protein_coding-intron (ENSMUSG00000023460.13, intron 1 of 5) 12118 ENSMUSG00000023460.13 ENSMUSG00000023460 ENSMUST00000146279 Rab12 protein_coding Interval_31969 chr11 104230829 104233368 + 0 NA intron (ENSMUSG00000018411.17, intron 1 of 5) protein_coding-intron (ENSMUSG00000018411.17, intron 1 of 11) 519 ENSMUSG00000018411.17 ENSMUSG00000018411 ENSMUST00000126820 Mapt protein_coding Interval_88555 chr2 6077385 6077979 + 0 NA Intergenic Intergenic 27255 ENSMUSG00000043241.14 ENSMUSG00000043241 ENSMUST00000144901 Upf2 protein_coding Interval_46166 chr13 62144268 62144875 + 0 NA intron (ENSMUSG00000074867.4, intron 1 of 3) protein_coding-intron (ENSMUSG00000074867.4, intron 1 of 3) -6599 ENSMUSG00000113690.1 ENSMUSG00000113690 ENSMUST00000221857 Gm36501 processed_pseudogene Interval_38205 chr12 76357246 76357833 + 0 NA promoter-TSS (ENSMUSG00000056459.14) protein_coding-promoter-TSS (ENSMUSG00000056459.14) 11925 ENSMUSG00000056459.14 ENSMUSG00000056459 ENSMUST00000176967 Zbtb25 protein_coding Interval_20833 chr10 121389535 121389901 + 0 NA intron (ENSMUSG00000034707.7, intron 2 of 5) protein_coding-intron (ENSMUSG00000034707.7, intron 10 of 13) -10995 ENSMUSG00000112209.1 ENSMUSG00000112209 ENSMUST00000218038 Gm18730 processed_pseudogene Interval_171714 chr9 120415452 120416018 + 0 NA intron (ENSMUSG00000041794.13, intron 1 of 1) protein_coding-intron (ENSMUSG00000041794.13, intron 3 of 16) 29426 ENSMUSG00000041794.13 ENSMUSG00000041794 ENSMUST00000129168 Myrip protein_coding Interval_170924 chr9 112207831 112208312 + 0 NA intron (ENSMUSG00000032503.18, intron 1 of 20) protein_coding-intron (ENSMUSG00000032503.18, intron 1 of 18) -19508 ENSMUSG00000089718.1 ENSMUSG00000089718 ENSMUST00000161216 2310075C17Rik lincRNA Interval_24570 chr11 34689876 34690109 + 0 NA intron (ENSMUSG00000020143.15, intron 19 of 26) protein_coding-intron (ENSMUSG00000020143.15, intron 19 of 51) 133959 ENSMUSG00000069910.2 ENSMUSG00000069910 ENSMUST00000148387 Spdl1 protein_coding Interval_152781 chr7 137475236 137475875 + 0 NA Intergenic Intergenic 37890 ENSMUSG00000031068.8 ENSMUSG00000031068 ENSMUST00000211598 Glrx3 protein_coding Interval_42784 chr13 19424383 19425226 + 0 NA Intergenic Intergenic 12004 ENSMUSG00000104959.1 ENSMUSG00000104959 ENSMUST00000199241 Gm18131 processed_pseudogene Interval_93204 chr2 71145998 71146473 + 0 NA Intergenic Intergenic 28312 ENSMUSG00000027015.4 ENSMUSG00000027015 ENSMUST00000028403 Cybrd1 protein_coding Interval_114740 chr4 84653857 84654045 + 0 NA intron (ENSMUSG00000028487.18, intron 1 of 5) protein_coding-intron (ENSMUSG00000028487.18, intron 1 of 7) -43912 ENSMUSG00000081775.1 ENSMUSG00000081775 ENSMUST00000119869 Gm12420 processed_pseudogene Interval_157869 chr8 75089169 75090340 + 0 NA Intergenic Intergenic -7090 ENSMUSG00000005413.8 ENSMUSG00000005413 ENSMUST00000159631 Hmox1 protein_coding Interval_113341 chr4 53594125 53594489 + 0 NA intron (ENSMUSG00000028412.17, intron 10 of 10) protein_coding-intron (ENSMUSG00000028412.17, intron 15 of 15) -29610 ENSMUSG00000084970.1 ENSMUSG00000084970 ENSMUST00000138377 1700060J05Rik antisense Interval_32902 chr11 112953436 112953704 + 0 NA Intergenic Intergenic 128391 ENSMUSG00000020624.3 ENSMUSG00000020624 ENSMUST00000153429 4933434M16Rik lincRNA Interval_7111 chr1 126051352 126052739 + 0 NA intron (ENSMUSG00000049690.15, intron 8 of 14) protein_coding-intron (ENSMUSG00000049690.15, intron 7 of 12) 19416 ENSMUSG00000102723.1 ENSMUSG00000102723 ENSMUST00000194647 Gm37936 TEC Interval_149364 chr7 97726239 97727557 + 0 NA TTS (ENSMUSG00000042797.9) protein_coding-TTS (ENSMUSG00000042797.9) 9103 ENSMUSG00000025439.5 ENSMUSG00000025439 ENSMUST00000205667 Clns1a protein_coding Interval_148744 chr7 85026147 85026387 + 0 NA Intergenic Intergenic -7760 ENSMUSG00000092530.1 ENSMUSG00000092530 ENSMUST00000173690 Vmn2r-ps64 unprocessed_pseudogene Interval_39594 chr12 91314197 91314836 + 0 NA intron (ENSMUSG00000061533.16, intron 10 of 25) protein_coding-intron (ENSMUSG00000061533.16, intron 10 of 13) -9153 ENSMUSG00000113239.1 ENSMUSG00000113239 ENSMUST00000222339 Gm18388 processed_pseudogene Interval_138832 chr6 92282384 92282687 + 0 NA Intergenic Intergenic -1142 ENSMUSG00000108279.1 ENSMUSG00000108279 ENSMUST00000203008 Gm44024 processed_pseudogene Interval_40192 chr12 102439177 102440137 + 0 NA exon (ENSMUSG00000021190.14, exon 1 of 14) protein_coding-exon (ENSMUSG00000021190.14, exon 1 of 14) -7671 ENSMUSG00000113265.1 ENSMUSG00000113265 ENSMUST00000222873 Gm30198 lincRNA Interval_109866 chr3 149169538 149169876 + 0 NA Intergenic Intergenic -40564 ENSMUSG00000105357.1 ENSMUSG00000105357 ENSMUST00000195939 Gm42647 processed_pseudogene Interval_8067 chr1 135537716 135537970 + 0 NA intron (ENSMUSG00000009418.16, intron 4 of 30) protein_coding-intron (ENSMUSG00000009418.16, intron 1 of 29) -12505 ENSMUSG00000104524.1 ENSMUSG00000104524 ENSMUST00000192904 Gm37333 TEC Interval_77780 chr18 3443521 3444269 + 0 NA Intergenic Intergenic -2919 ENSMUSG00000117370.1 ENSMUSG00000117370 ENSMUST00000235096 Gm6235 processed_pseudogene Interval_156934 chr8 61893656 61894651 + 0 NA intron (ENSMUSG00000058056.16, intron 1 of 21) protein_coding-intron (ENSMUSG00000058056.16, intron 1 of 19) -18907 ENSMUSG00000086866.2 ENSMUSG00000086866 ENSMUST00000211790 4930512H18Rik antisense Interval_37465 chr12 69158542 69160011 + 0 NA promoter-TSS (ENSMUSG00000034892.8) protein_coding-promoter-TSS (ENSMUSG00000034892.8) -19 ENSMUSG00000099021.1 ENSMUSG00000099021 ENSMUST00000174924 Rn7s1 misc_RNA Interval_15278 chr10 44049916 44050123 + 0 NA intron (ENSMUSG00000019866.15, intron 2 of 21) protein_coding-intron (ENSMUSG00000019866.15, intron 2 of 21) 8759 ENSMUSG00000019866.15 ENSMUSG00000019866 ENSMUST00000239010 Crybg1 protein_coding Interval_24088 chr11 30128846 30129487 + 0 NA intron (ENSMUSG00000020315.18, intron 18 of 30) protein_coding-intron (ENSMUSG00000020315.18, intron 18 of 35) 22772 ENSMUSG00000101872.1 ENSMUSG00000101872 ENSMUST00000186216 Gm29237 antisense Interval_76563 chr17 81130340 81130773 + 0 NA Intergenic Intergenic -65474 ENSMUSG00000024246.9 ENSMUSG00000024246 ENSMUST00000234801 Thumpd2 protein_coding Interval_33176 chr11 114989403 114989681 + 0 NA intron (ENSMUSG00000034641.2, intron 1 of 3) protein_coding-intron (ENSMUSG00000034641.2, intron 1 of 3) 380 ENSMUSG00000034641.2 ENSMUSG00000034641 ENSMUST00000045075 Cd300ld protein_coding Interval_3729 chr1 62397805 62398839 + 0 NA intron (ENSMUSG00000052062.14, intron 18 of 21) protein_coding-intron (ENSMUSG00000052062.14, intron 17 of 21) 100939 ENSMUSG00000085400.1 ENSMUSG00000085400 ENSMUST00000147177 Pard3bos3 antisense Interval_81966 chr18 66470731 66471570 + 0 NA Intergenic Intergenic 12575 ENSMUSG00000024521.8 ENSMUSG00000024521 ENSMUST00000236933 Pmaip1 protein_coding Interval_24912 chr11 41208819 41209169 + 0 NA Intergenic Intergenic -9843 ENSMUSG00000086475.1 ENSMUSG00000086475 ENSMUST00000133945 Platr13 lincRNA Interval_125701 chr5 73359533 73360578 + 0 NA Intergenic Intergenic -21497 ENSMUSG00000029153.11 ENSMUSG00000029153 ENSMUST00000200821 Ociad2 protein_coding Interval_43167 chr13 24814967 24815293 + 0 NA exon (ENSMUSG00000019132.11, exon 5 of 5) protein_coding-exon (ENSMUSG00000019132.11, exon 5 of 5) -3562 ENSMUSG00000064811.1 ENSMUSG00000064811 ENSMUST00000082877 Gm22358 snoRNA Interval_82 GL456221.1 64960 65455 + 0 NA NA NA NA NA Interval_43056 chr13 23513392 23514147 + 0 NA Intergenic Intergenic -4373 ENSMUSG00000104750.1 ENSMUSG00000104750 ENSMUST00000199903 n-TStga1 miRNA Interval_135824 chr6 47587352 47587680 + 0 NA intron (ENSMUSG00000029687.16, intron 1 of 6) protein_coding-intron (ENSMUSG00000029687.16, intron 1 of 19) 2300 ENSMUSG00000107628.1 ENSMUSG00000107628 ENSMUST00000203199 Gm44282 processed_pseudogene Interval_62816 chr15 97186033 97186951 + 0 NA Intergenic Intergenic -19248 ENSMUSG00000116295.1 ENSMUSG00000116295 ENSMUST00000229491 Gm32885 lincRNA Interval_64890 chr16 17009767 17010430 + 0 NA intron (ENSMUSG00000063358.17, intron 1 of 8) protein_coding-intron (ENSMUSG00000063358.17, intron 1 of 8) -3897 ENSMUSG00000087951.1 ENSMUSG00000087951 ENSMUST00000157326 Gm22558 snRNA Interval_125477 chr5 67442946 67443457 + 0 NA Intergenic Intergenic -10278 ENSMUSG00000106925.1 ENSMUSG00000106925 ENSMUST00000202231 Gm20072 processed_pseudogene Interval_56958 chr14 124054767 124055071 + 0 NA intron (ENSMUSG00000025551.13, intron 3 of 4) protein_coding-intron (ENSMUSG00000025551.13, intron 3 of 4) 67284 ENSMUSG00000099994.1 ENSMUSG00000099994 ENSMUST00000190088 1700024B18Rik antisense Interval_10496 chr1 171319517 171320365 + 0 NA TTS (ENSMUSG00000103983.1) lincRNA-TTS (ENSMUSG00000103983.1) 6236 ENSMUSG00000103983.1 ENSMUSG00000103983 ENSMUST00000192658 Gm20045 lincRNA Interval_149148 chr7 95091587 95092071 + 0 NA Intergenic Intergenic -80035 ENSMUSG00000084636.1 ENSMUSG00000084636 ENSMUST00000122687 Gm23884 misc_RNA Interval_171547 chr9 119136982 119137201 + 0 NA intron (ENSMUSG00000038060.15, intron 22 of 36) protein_coding-intron (ENSMUSG00000038060.15, intron 16 of 26) 12972 ENSMUSG00000010651.4 ENSMUSG00000010651 ENSMUST00000127952 Acaa1b protein_coding Interval_75581 chr17 68767266 68767546 + 0 NA intron (ENSMUSG00000041565.17, intron 1 of 2) protein_coding-intron (ENSMUSG00000041565.17, intron 18 of 19) -6414 ENSMUSG00000041565.17 ENSMUSG00000041565 ENSMUST00000233696 L3mbtl4 protein_coding Interval_87122 chr19 46308831 46309339 + 0 NA exon (ENSMUSG00000025225.15, exon 11 of 19) protein_coding-exon (ENSMUSG00000025225.15, exon 11 of 19) 3087 ENSMUSG00000025225.15 ENSMUSG00000025225 ENSMUST00000235868 Nfkb2 protein_coding Interval_55916 chr14 102151458 102151688 + 0 NA Intergenic Intergenic -168810 ENSMUSG00000115584.1 ENSMUSG00000115584 ENSMUST00000226515 Gm5854 processed_pseudogene Interval_4612 chr1 75445714 75446168 + 0 NA Intergenic Intergenic -4495 ENSMUSG00000033007.15 ENSMUSG00000033007 ENSMUST00000037708 Asic4 protein_coding Interval_10610 chr1 172202871 172203573 + 0 NA intron (ENSMUSG00000013698.12, intron 1 of 1) protein_coding-intron (ENSMUSG00000013698.12, intron 1 of 3) 3475 ENSMUSG00000013698.12 ENSMUSG00000013698 ENSMUST00000152432 Pea15a protein_coding Interval_53900 chr14 63222742 63222970 + 0 NA intron (ENSMUSG00000021944.15, intron 2 of 6) protein_coding-intron (ENSMUSG00000021944.15, intron 2 of 6) -29331 ENSMUSG00000035121.6 ENSMUSG00000035121 ENSMUST00000223723 Neil2 protein_coding Interval_8022 chr1 135250651 135251883 + 0 NA intron (ENSMUSG00000097680.1, intron 1 of 2) antisense-intron (ENSMUSG00000097680.1, intron 1 of 2) 2706 ENSMUSG00000097680.1 ENSMUSG00000097680 ENSMUST00000180981 Gm26642 antisense Interval_143418 chr7 6586312 6586921 + 0 NA Intergenic Intergenic 21775 ENSMUSG00000056696.5 ENSMUSG00000056696 ENSMUST00000070985 Olfr1350 protein_coding Interval_96327 chr2 121642619 121643785 + 0 NA intron (ENSMUSG00000027238.17, intron 1 of 7) protein_coding-intron (ENSMUSG00000027238.17, intron 1 of 13) 58523 ENSMUSG00000081264.1 ENSMUSG00000081264 ENSMUST00000117683 Gm14021 processed_pseudogene Interval_117546 chr4 124605905 124607633 + 0 NA intron (ENSMUSG00000098760.1, intron 1 of 1) antisense-intron (ENSMUSG00000098760.1, intron 1 of 1) 37579 ENSMUSG00000073759.6 ENSMUSG00000073759 ENSMUST00000133499 4933407E24Rik lincRNA Interval_162182 chr8 125740861 125742114 + 0 NA intron (ENSMUSG00000031851.14, intron 3 of 4) protein_coding-intron (ENSMUSG00000031851.14, intron 3 of 4) 5652 ENSMUSG00000031851.14 ENSMUSG00000031851 ENSMUST00000152189 Ntpcr protein_coding Interval_152545 chr7 134163086 134163465 + 0 NA intron (ENSMUSG00000054555.11, intron 2 of 6) protein_coding-intron (ENSMUSG00000054555.11, intron 2 of 22) -62997 ENSMUSG00000108478.1 ENSMUSG00000108478 ENSMUST00000206856 Gm19514 TEC Interval_38366 chr12 77852600 77852882 + 0 NA Intergenic Intergenic 33159 ENSMUSG00000112551.1 ENSMUSG00000112551 ENSMUST00000218309 Gm8219 processed_pseudogene Interval_105784 chr3 89319832 89323407 + 0 NA promoter-TSS (ENSMUSG00000028039.11) protein_coding-promoter-TSS (ENSMUSG00000028039.11) 1268 ENSMUSG00000028039.11 ENSMUSG00000028039 ENSMUST00000139439 Efna3 protein_coding Interval_67109 chr16 43263886 43264110 + 0 NA intron (ENSMUSG00000022708.16, intron 1 of 6) protein_coding-intron (ENSMUSG00000022708.16, intron 1 of 8) 44283 ENSMUSG00000102967.1 ENSMUSG00000102967 ENSMUST00000192064 Gm37946 TEC Interval_61704 chr15 83495841 83496498 + 0 NA intron (ENSMUSG00000022442.16, intron 9 of 11) protein_coding-intron (ENSMUSG00000022442.16, intron 9 of 11) 14624 ENSMUSG00000022442.16 ENSMUSG00000022442 ENSMUST00000154401 Ttll1 protein_coding Interval_60206 chr15 68032241 68032790 + 0 NA Intergenic Intergenic -89711 ENSMUSG00000116519.1 ENSMUSG00000116519 ENSMUST00000230045 Gm49409 processed_pseudogene Interval_81930 chr18 65959734 65960422 + 0 NA intron (ENSMUSG00000024519.6, intron 1 of 1) protein_coding-intron (ENSMUSG00000024519.6, intron 2 of 2) 7604 ENSMUSG00000024519.6 ENSMUSG00000024519 ENSMUST00000236894 Cplx4 protein_coding Interval_14238 chr10 29361394 29362564 + 0 NA promoter-TSS (ENSMUSG00000038876.12) protein_coding-promoter-TSS (ENSMUSG00000038876.12) 68 ENSMUSG00000038876.12 ENSMUSG00000038876 ENSMUST00000214896 Rnf146 protein_coding Interval_7994 chr1 135112624 135112895 + 0 NA promoter-TSS (ENSMUSG00000097993.7) polymorphic_pseudogene-promoter-TSS (ENSMUSG00000097993.7) 3798 ENSMUSG00000097988.1 ENSMUSG00000097988 ENSMUST00000182275 Gm10535 antisense Interval_55656 chr14 98293837 98294333 + 0 NA Intergenic Intergenic -19816 ENSMUSG00000115218.1 ENSMUSG00000115218 ENSMUST00000226945 Gm46477 processed_pseudogene Interval_28992 chr11 79776407 79777363 + 0 NA Intergenic Intergenic 28287 ENSMUSG00000086474.2 ENSMUSG00000086474 ENSMUST00000162268 9130204K15Rik lincRNA Interval_7201 chr1 127780288 127781744 + 0 NA intron (ENSMUSG00000026349.14, intron 2 of 4) protein_coding-intron (ENSMUSG00000026349.14, intron 2 of 8) -6962 ENSMUSG00000102014.1 ENSMUSG00000102014 ENSMUST00000185310 2900009J06Rik antisense Interval_22545 chr11 11673991 11674343 + 0 NA intron (ENSMUSG00000085652.1, intron 1 of 3) processed_transcript-intron (ENSMUSG00000085652.1, intron 1 of 3) -10836 ENSMUSG00000018654.17 ENSMUSG00000018654 ENSMUST00000018798 Ikzf1 protein_coding Interval_17626 chr10 78311659 78312711 + 0 NA intron (ENSMUSG00000001211.15, intron 2 of 9) protein_coding-intron (ENSMUSG00000001211.15, intron 2 of 9) -1980 ENSMUSG00000065691.1 ENSMUSG00000065691 ENSMUST00000083757 n-R5s77 rRNA Interval_100845 chr2 172852350 172853640 + 0 NA Intergenic Intergenic 11346 ENSMUSG00000093160.1 ENSMUSG00000093160 ENSMUST00000175419 Gm22773 miRNA Interval_15765 chr10 56344943 56346519 + 0 NA Intergenic Intergenic 9343 ENSMUSG00000071303.4 ENSMUSG00000071303 ENSMUST00000172445 Rps8-ps1 processed_pseudogene Interval_99846 chr2 165269160 165269896 + 0 NA TTS (ENSMUSG00000087800.1) snoRNA-TTS (ENSMUSG00000087800.1) 648 ENSMUSG00000087800.1 ENSMUSG00000087800 ENSMUST00000157175 Gm25569 snoRNA Interval_1418 chr1 21960544 21962497 + 0 NA promoter-TSS (ENSMUSG00000028033.16) protein_coding-promoter-TSS (ENSMUSG00000028033.16) 61 ENSMUSG00000028033.16 ENSMUSG00000028033 ENSMUST00000134505 Kcnq5 protein_coding Interval_161642 chr8 121753072 121753747 + 0 NA promoter-TSS (ENSMUSG00000025318.13) protein_coding-promoter-TSS (ENSMUSG00000025318.13) -67 ENSMUSG00000025318.13 ENSMUSG00000025318 ENSMUST00000172209 Jph3 protein_coding Interval_164834 chr9 42347959 42348404 + 0 NA exon (ENSMUSG00000037705.13, exon 14 of 24) protein_coding-exon (ENSMUSG00000037705.13, exon 14 of 24) -30500 ENSMUSG00000096114.1 ENSMUSG00000096114 ENSMUST00000179241 Gm26272 snoRNA Interval_166052 chr9 56118434 56119130 + 0 NA intron (ENSMUSG00000032322.14, intron 3 of 13) protein_coding-intron (ENSMUSG00000032322.14, intron 3 of 14) 28806 ENSMUSG00000032322.14 ENSMUSG00000032322 ENSMUST00000132800 Pstpip1 protein_coding Interval_44295 chr13 43427842 43428400 + 0 NA intron (ENSMUSG00000038546.9, intron 3 of 6) protein_coding-intron (ENSMUSG00000038546.9, intron 5 of 13) -2271 ENSMUSG00000065315.1 ENSMUSG00000065315 ENSMUST00000083381 Gm26064 snRNA Interval_97971 chr2 146286142 146286418 + 0 NA intron (ENSMUSG00000037110.20, intron 39 of 41) protein_coding-intron (ENSMUSG00000037110.20, intron 38 of 40) -19267 ENSMUSG00000042938.8 ENSMUSG00000042938 ENSMUST00000122417 Gm14117 processed_pseudogene Interval_22043 chr11 5968186 5968597 + 0 NA TTS (ENSMUSG00000002741.9) protein_coding-TTS (ENSMUSG00000002741.9) 9087 ENSMUSG00000002741.9 ENSMUSG00000002741 ENSMUST00000143834 Ykt6 protein_coding Interval_63851 chr16 3991013 3991203 + 0 NA intron (ENSMUSG00000039738.16, intron 5 of 13) protein_coding-intron (ENSMUSG00000039738.16, intron 6 of 14) 12662 ENSMUSG00000039738.16 ENSMUSG00000039738 ENSMUST00000171658 Slx4 protein_coding Interval_146650 chr7 49136596 49136807 + 0 NA intron (ENSMUSG00000108950.1, intron 2 of 2) protein_coding-intron (ENSMUSG00000052512.17, intron 2 of 39) -2425 ENSMUSG00000108950.1 ENSMUSG00000108950 ENSMUST00000208621 9130015G15Rik antisense Interval_35568 chr12 24876815 24877596 + 0 NA intron (ENSMUSG00000020646.17, intron 1 of 9) protein_coding-intron (ENSMUSG00000020646.17, intron 1 of 9) 45574 ENSMUSG00000020646.17 ENSMUSG00000020646 ENSMUST00000222994 Mboat2 protein_coding Interval_97638 chr2 141418825 141419106 + 0 NA intron (ENSMUSG00000068205.14, intron 5 of 16) protein_coding-intron (ENSMUSG00000068205.14, intron 5 of 17) -131974 ENSMUSG00000086450.1 ENSMUSG00000086450 ENSMUST00000151538 Macrod2os1 antisense Interval_129738 chr5 122054215 122054778 + 0 NA intron (ENSMUSG00000087386.1, intron 2 of 2) antisense-intron (ENSMUSG00000087386.1, intron 2 of 2) 6114 ENSMUSG00000087386.1 ENSMUSG00000087386 ENSMUST00000135544 Gm15637 antisense Interval_138756 chr6 91657639 91657957 + 0 NA Intergenic Intergenic 21425 ENSMUSG00000108751.1 ENSMUSG00000108751 ENSMUST00000206576 Gm45217 TEC Interval_69210 chr16 91371773 91373618 + 0 NA promoter-TSS (ENSMUSG00000022971.18) protein_coding-promoter-TSS (ENSMUSG00000022971.18) -15094 ENSMUSG00000022971.18 ENSMUSG00000022971 ENSMUST00000139503 Ifnar2 protein_coding Interval_62268 chr15 89334287 89336810 + 0 NA promoter-TSS (ENSMUSG00000022613.8) protein_coding-promoter-TSS (ENSMUSG00000022613.8) 618 ENSMUSG00000022613.8 ENSMUSG00000022613 ENSMUST00000162033 Miox protein_coding Interval_105772 chr3 89258530 89259077 + 0 NA promoter-TSS (ENSMUSG00000042737.9) protein_coding-promoter-TSS (ENSMUSG00000042737.9) -7836 ENSMUSG00000042737.9 ENSMUSG00000042737 ENSMUST00000137975 Dpm3 protein_coding Interval_152495 chr7 133510892 133511405 + 0 NA Intergenic Intergenic 91010 ENSMUSG00000030976.3 ENSMUSG00000030976 ENSMUST00000033275 Tex36 protein_coding Interval_56957 chr14 124038893 124039636 + 0 NA intron (ENSMUSG00000025551.13, intron 3 of 4) protein_coding-intron (ENSMUSG00000025551.13, intron 3 of 4) 51629 ENSMUSG00000099994.1 ENSMUSG00000099994 ENSMUST00000190088 1700024B18Rik antisense Interval_146914 chr7 55827359 55828780 + 0 NA TTS (ENSMUSG00000033790.11) protein_coding-TTS (ENSMUSG00000033790.11) 33904 ENSMUSG00000033790.11 ENSMUSG00000033790 ENSMUST00000206133 Tubgcp5 protein_coding Interval_48604 chr13 100607863 100608122 + 0 NA intron (ENSMUSG00000021636.15, intron 1 of 5) protein_coding-intron (ENSMUSG00000021636.15, intron 2 of 6) 3633 ENSMUSG00000065678.1 ENSMUSG00000065678 ENSMUST00000083744 Gm24261 snRNA Interval_50650 chr14 17408343 17408580 + 0 NA Intergenic Intergenic 286958 ENSMUSG00000114769.1 ENSMUSG00000114769 ENSMUST00000224880 Gm48312 processed_pseudogene Interval_57639 chr15 13088234 13089292 + 0 NA intron (ENSMUSG00000039385.5, intron 2 of 3) protein_coding-intron (ENSMUSG00000039385.5, intron 2 of 11) 84912 ENSMUSG00000039385.5 ENSMUSG00000039385 ENSMUST00000226917 Cdh6 protein_coding Interval_87534 chr19 53296407 53297249 + 0 NA Intergenic Intergenic 28915 ENSMUSG00000118369.1 ENSMUSG00000118369 ENSMUST00000237210 Gm30541 processed_transcript Interval_4890 chr1 81593256 81594116 + 0 NA Intergenic Intergenic -36203 ENSMUSG00000101986.1 ENSMUSG00000101986 ENSMUST00000191337 Gm6198 processed_pseudogene Interval_173522 chrX 98317390 98317878 + 0 NA exon (ENSMUSG00000046532.8, exon 8 of 8) protein_coding-exon (ENSMUSG00000046532.8, exon 8 of 8) -166156 ENSMUSG00000082933.1 ENSMUSG00000082933 ENSMUST00000117070 Gm14811 processed_pseudogene Interval_141297 chr6 127019262 127019917 + 0 NA intron (ENSMUSG00000000183.6, intron 2 of 2) protein_coding-intron (ENSMUSG00000000183.6, intron 2 of 2) 4003 ENSMUSG00000000183.6 ENSMUSG00000000183 ENSMUST00000000187 Fgf6 protein_coding Interval_62486 chr15 93422755 93422998 + 0 NA intron (ENSMUSG00000036167.16, intron 3 of 9) protein_coding-intron (ENSMUSG00000036167.16, intron 3 of 9) 23668 ENSMUSG00000036167.16 ENSMUSG00000036167 ENSMUST00000229721 Pphln1 protein_coding Interval_10240 chr1 167446233 167447267 + 0 NA intron (ENSMUSG00000040485.5, intron 1 of 1) protein_coding-intron (ENSMUSG00000040485.5, intron 1 of 1) 20030 ENSMUSG00000040485.5 ENSMUSG00000040485 ENSMUST00000036643 Lrrc52 protein_coding Interval_66223 chr16 32404598 32404848 + 0 NA intron (ENSMUSG00000079625.2, intron 1 of 4) protein_coding-intron (ENSMUSG00000079625.2, intron 1 of 4) -3813 ENSMUSG00000103847.1 ENSMUSG00000103847 ENSMUST00000194813 Gm20056 processed_pseudogene Interval_121414 chr4 155641586 155642414 + 0 NA intron (ENSMUSG00000029062.14, intron 10 of 18) protein_coding-intron (ENSMUSG00000029062.14, intron 11 of 19) 3408 ENSMUSG00000073682.3 ENSMUSG00000073682 ENSMUST00000115821 Gm10563 protein_coding Interval_87856 chr19 56594906 56595135 + 0 NA intron (ENSMUSG00000025078.9, intron 10 of 10) protein_coding-intron (ENSMUSG00000025078.9, intron 10 of 10) 24223 ENSMUSG00000025078.9 ENSMUSG00000025078 ENSMUST00000236979 Nhlrc2 protein_coding Interval_174331 chrX 144461160 144461412 + 0 NA intron (ENSMUSG00000072934.10, intron 1 of 3) protein_coding-intron (ENSMUSG00000041710.4, intron 3 of 10) -9395 ENSMUSG00000072934.10 ENSMUSG00000072934 ENSMUST00000178233 Trpc5os protein_coding Interval_160819 chr8 112733510 112733687 + 0 NA TTS (ENSMUSG00000031772.17) protein_coding-TTS (ENSMUSG00000031772.17) -40056 ENSMUSG00000031772.17 ENSMUSG00000031772 ENSMUST00000140753 Cntnap4 protein_coding Interval_9306 chr1 156062323 156062489 + 0 NA promoter-TSS (ENSMUSG00000050565.16) protein_coding-promoter-TSS (ENSMUSG00000050565.16) 26634 ENSMUSG00000050565.16 ENSMUSG00000050565 ENSMUST00000125371 Tor1aip2 protein_coding Interval_46236 chr13 62855584 62856713 + 0 NA intron (ENSMUSG00000021456.8, intron 1 of 6) protein_coding-intron (ENSMUSG00000021456.8, intron 1 of 6) 161 ENSMUSG00000021456.8 ENSMUSG00000021456 ENSMUST00000222000 Fbp2 protein_coding Interval_101447 chr2 181487337 181487927 + 0 NA Intergenic Intergenic -5574 ENSMUSG00000055882.8 ENSMUSG00000055882 ENSMUST00000069649 Abhd16b protein_coding Interval_119745 chr4 139636336 139636598 + 0 NA TTS (ENSMUSG00000028737.15) protein_coding-TTS (ENSMUSG00000028737.15) -7575 ENSMUSG00000098569.1 ENSMUSG00000098569 ENSMUST00000183787 Mir7020 miRNA Interval_147147 chr7 63858430 63859366 + 0 NA Intergenic Intergenic 31920 ENSMUSG00000108629.1 ENSMUSG00000108629 ENSMUST00000206076 Gm44720 processed_pseudogene Interval_12102 chr1 189754806 189755741 + 0 NA intron (ENSMUSG00000026604.17, intron 1 of 9) protein_coding-intron (ENSMUSG00000026604.17, intron 1 of 18) 69945 ENSMUSG00000103374.1 ENSMUSG00000103374 ENSMUST00000193510 Gm37239 processed_pseudogene Interval_146736 chr7 49813970 49814320 + 0 NA promoter-TSS (ENSMUSG00000109154.1) TEC-promoter-TSS (ENSMUSG00000109154.1) -57 ENSMUSG00000109154.1 ENSMUSG00000109154 ENSMUST00000208559 Gm44822 TEC Interval_83 GL456221.1 71961 72199 + 0 NA NA NA NA NA Interval_125377 chr5 66551600 66552229 + 0 NA intron (ENSMUSG00000029207.16, intron 1 of 5) protein_coding-intron (ENSMUSG00000029207.16, intron 1 of 17) -17753 ENSMUSG00000106720.1 ENSMUSG00000106720 ENSMUST00000202051 Gm43795 TEC Interval_114351 chr4 74187547 74187755 + 0 NA exon (ENSMUSG00000049122.17, exon 14 of 14) protein_coding-exon (ENSMUSG00000049122.17, exon 14 of 14) 18714 ENSMUSG00000049122.17 ENSMUSG00000049122 ENSMUST00000154134 Frmd3 protein_coding Interval_139528 chr6 100795547 100795806 + 0 NA intron (ENSMUSG00000030074.9, intron 5 of 6) protein_coding-intron (ENSMUSG00000030074.9, intron 5 of 6) 3847 ENSMUSG00000107989.1 ENSMUSG00000107989 ENSMUST00000203856 Gm19692 TEC Interval_109860 chr3 149084613 149086106 + 0 NA Intergenic Intergenic 56427 ENSMUSG00000065270.1 ENSMUSG00000065270 ENSMUST00000083336 Gm25127 snRNA Interval_43047 chr13 23478398 23478644 + 0 NA exon (ENSMUSG00000053216.15, exon 9 of 10) protein_coding-exon (ENSMUSG00000053216.15, exon 9 of 10) 10309 ENSMUSG00000053216.15 ENSMUSG00000053216 ENSMUST00000110432 Btn2a2 protein_coding Interval_36523 chr12 48290107 48290544 + 0 NA Intergenic Intergenic -204894 ENSMUSG00000112085.1 ENSMUSG00000112085 ENSMUST00000218671 Gm48587 unprocessed_pseudogene Interval_104396 chr3 65212512 65212815 + 0 NA intron (ENSMUSG00000027827.17, intron 2 of 14) protein_coding-intron (ENSMUSG00000027827.17, intron 1 of 13) 90022 ENSMUSG00000104093.1 ENSMUSG00000104093 ENSMUST00000195489 A330015K06Rik antisense Interval_61136 chr15 79455393 79456032 + 0 NA promoter-TSS (ENSMUSG00000022433.20) protein_coding-promoter-TSS (ENSMUSG00000022433.20) -13576 ENSMUSG00000022433.20 ENSMUSG00000022433 ENSMUST00000156043 Csnk1e protein_coding Interval_171009 chr9 113701339 113701683 + 0 NA intron (ENSMUSG00000032504.15, intron 1 of 17) protein_coding-intron (ENSMUSG00000032504.15, intron 1 of 17) -3934 ENSMUSG00000032504.15 ENSMUSG00000032504 ENSMUST00000156425 Pdcd6ip protein_coding Interval_54883 chr14 75976091 75976377 + 0 NA intron (ENSMUSG00000067995.4, intron 4 of 7) protein_coding-intron (ENSMUSG00000067995.4, intron 4 of 7) -3615 ENSMUSG00000065799.1 ENSMUSG00000065799 ENSMUST00000083865 Gm25517 snoRNA Interval_150879 chr7 116142770 116143126 + 0 NA intron (ENSMUSG00000045659.18, intron 18 of 18) protein_coding-intron (ENSMUSG00000045659.18, intron 14 of 24) -13423 ENSMUSG00000045659.18 ENSMUSG00000045659 ENSMUST00000205446 Plekha7 protein_coding Interval_33603 chr11 117441214 117441565 + 0 NA Intergenic Intergenic 15211 ENSMUSG00000085336.1 ENSMUSG00000085336 ENSMUST00000151381 Gm11732 processed_transcript Interval_105498 chr3 87072960 87073504 + 0 NA Intergenic Intergenic 6339 ENSMUSG00000077672.1 ENSMUSG00000077672 ENSMUST00000104484 Gm24472 snoRNA Interval_165619 chr9 50448929 50449368 + 0 NA Intergenic Intergenic -45379 ENSMUSG00000032068.14 ENSMUSG00000032068 ENSMUST00000188047 Plet1 protein_coding Interval_68503 chr16 78273468 78273776 + 0 NA intron (ENSMUSG00000109841.2, intron 1 of 2) processed_transcript-intron (ENSMUSG00000109841.2, intron 1 of 2) 21365 ENSMUSG00000109841.2 ENSMUSG00000109841 ENSMUST00000210555 E330011O21Rik processed_transcript Interval_155540 chr8 34173302 34173715 + 0 NA Intergenic Intergenic -6796 ENSMUSG00000098785.1 ENSMUSG00000098785 ENSMUST00000183885 Mir6395 miRNA Interval_23390 chr11 22140777 22140998 + 0 NA intron (ENSMUSG00000042302.14, intron 10 of 24) protein_coding-intron (ENSMUSG00000042302.14, intron 9 of 23) -139177 ENSMUSG00000005917.15 ENSMUSG00000005917 ENSMUST00000147486 Otx1 protein_coding Interval_49474 chr13 112295176 112296072 + 0 NA intron (ENSMUSG00000049985.15, intron 1 of 5) protein_coding-intron (ENSMUSG00000049985.15, intron 1 of 10) 4503 ENSMUSG00000088991.1 ENSMUSG00000088991 ENSMUST00000158366 Gm22768 snRNA Interval_137524 chr6 72875845 72876109 + 0 NA intron (ENSMUSG00000055239.10, intron 1 of 3) protein_coding-intron (ENSMUSG00000055239.10, intron 1 of 6) 19942 ENSMUSG00000107610.1 ENSMUSG00000107610 ENSMUST00000205107 D530018E20Rik TEC Interval_156410 chr8 47967436 47967665 + 0 NA intron (ENSMUSG00000031563.8, intron 1 of 22) protein_coding-intron (ENSMUSG00000031563.8, intron 1 of 22) 23374 ENSMUSG00000031563.8 ENSMUSG00000031563 ENSMUST00000212282 Wwc2 protein_coding Interval_166696 chr9 62026278 62027306 + 0 NA promoter-TSS (ENSMUSG00000032278.11) protein_coding-promoter-TSS (ENSMUSG00000032278.11) 9 ENSMUSG00000032278.11 ENSMUSG00000032278 ENSMUST00000113990 Paqr5 protein_coding Interval_36451 chr12 45004091 45004470 + 0 NA intron (ENSMUSG00000046314.16, intron 2 of 2) protein_coding-intron (ENSMUSG00000046314.16, intron 2 of 5) -39387 ENSMUSG00000086012.2 ENSMUSG00000086012 ENSMUST00000219623 Gm15902 sense_intronic Interval_78290 chr18 11671872 11672105 + 0 NA intron (ENSMUSG00000041238.16, intron 1 of 7) protein_coding-intron (ENSMUSG00000041238.16, intron 2 of 18) -14204 ENSMUSG00000117634.1 ENSMUSG00000117634 ENSMUST00000235010 Gm50069 antisense Interval_27691 chr11 69500522 69500854 + 0 NA intron (ENSMUSG00000005237.14, intron 13 of 85) protein_coding-intron (ENSMUSG00000005237.14, intron 12 of 84) 4747 ENSMUSG00000098432.1 ENSMUSG00000098432 ENSMUST00000184128 Gm27493 miRNA Interval_119887 chr4 140690329 140691916 + 0 NA Intergenic Intergenic -1575 ENSMUSG00000095878.1 ENSMUSG00000095878 ENSMUST00000175041 Gm23045 miRNA Interval_38999 chr12 84379575 84379841 + 0 NA TTS (ENSMUSG00000021236.16) protein_coding-TTS (ENSMUSG00000021236.16) 8706 ENSMUSG00000021235.13 ENSMUSG00000021235 ENSMUST00000156592 Coq6 protein_coding Interval_3113 chr1 53581082 53582166 + 0 NA intron (ENSMUSG00000096141.2, intron 22 of 65) protein_coding-intron (ENSMUSG00000096141.2, intron 22 of 65) 125160 ENSMUSG00000096141.2 ENSMUSG00000096141 ENSMUST00000189677 Dnah7a protein_coding Interval_115016 chr4 88489250 88489470 + 0 NA Intergenic Intergenic 33414 ENSMUSG00000048806.4 ENSMUSG00000048806 ENSMUST00000055671 Ifnb1 protein_coding Interval_83864 chr19 5176124 5176365 + 0 NA intron (ENSMUSG00000024855.10, intron 2 of 4) protein_coding-intron (ENSMUSG00000024855.10, intron 1 of 23) 25059 ENSMUSG00000098803.1 ENSMUSG00000098803 ENSMUST00000183577 Gm27468 miRNA Interval_17005 chr10 70379994 70380306 + 0 NA Intergenic Intergenic 35431 ENSMUSG00000112884.1 ENSMUSG00000112884 ENSMUST00000219437 Gm47946 lincRNA Interval_88755 chr2 10317701 10319102 + 0 NA Intergenic Intergenic -54047 ENSMUSG00000061186.15 ENSMUSG00000061186 ENSMUST00000041105 Sfmbt2 protein_coding Interval_164849 chr9 42432311 42432745 + 0 NA intron (ENSMUSG00000037287.15, intron 7 of 7) protein_coding-intron (ENSMUSG00000037287.15, intron 7 of 7) -10324 ENSMUSG00000104589.1 ENSMUSG00000104589 ENSMUST00000196448 Gm44311 miRNA Interval_105576 chr3 87857822 87858114 + 0 NA TTS (ENSMUSG00000004895.9) protein_coding-TTS (ENSMUSG00000004895.9) 10957 ENSMUSG00000028071.12 ENSMUSG00000028071 ENSMUST00000194639 Sh2d2a protein_coding Interval_34225 chr11 121424818 121425090 + 0 NA exon (ENSMUSG00000039253.7, exon 2 of 6) protein_coding-exon (ENSMUSG00000039253.7, exon 2 of 6) 3553 ENSMUSG00000039253.7 ENSMUSG00000039253 ENSMUST00000038096 Fn3krp protein_coding Interval_84070 chr19 7039378 7040866 + 0 NA promoter-TSS (ENSMUSG00000024966.9) protein_coding-promoter-TSS (ENSMUSG00000024966.9) -155 ENSMUSG00000024966.9 ENSMUSG00000024966 ENSMUST00000025918 Stip1 protein_coding Interval_77783 chr18 3469796 3471406 + 0 NA Intergenic Intergenic -1029 ENSMUSG00000096528.1 ENSMUSG00000096528 ENSMUST00000179907 G430049J08Rik TEC Interval_91684 chr2 47642570 47643236 + 0 NA Intergenic Intergenic 100919 ENSMUSG00000092853.1 ENSMUSG00000092853 ENSMUST00000175112 Gm25959 miRNA Interval_61541 chr15 82244035 82245029 + 0 NA promoter-TSS (ENSMUSG00000068101.11) protein_coding-promoter-TSS (ENSMUSG00000068101.11) -122 ENSMUSG00000068101.11 ENSMUSG00000068101 ENSMUST00000229747 Cenpm protein_coding Interval_30509 chr11 94837898 94839334 + 0 NA Intergenic Intergenic 7476 ENSMUSG00000081586.3 ENSMUSG00000081586 ENSMUST00000120215 Gm11544 unprocessed_pseudogene Interval_154537 chr8 19160789 19162344 + 0 NA Intergenic Intergenic 3680 ENSMUSG00000079842.1 ENSMUSG00000079842 ENSMUST00000058955 Spag11a protein_coding Interval_32271 chr11 106633346 106634856 + 0 NA Intergenic Intergenic 29225 ENSMUSG00000020717.19 ENSMUSG00000020717 ENSMUST00000124958 Pecam1 protein_coding Interval_107518 chr3 108271791 108272491 + 0 NA intron (ENSMUSG00000068749.9, intron 1 of 3) protein_coding-intron (ENSMUSG00000068749.9, intron 7 of 8) 3266 ENSMUSG00000068749.9 ENSMUSG00000068749 ENSMUST00000129708 Psma5 protein_coding Interval_47450 chr13 84404151 84405751 + 0 NA Intergenic Intergenic -64838 ENSMUSG00000098245.1 ENSMUSG00000098245 ENSMUST00000182385 Gm26927 processed_pseudogene Interval_44898 chr13 49513585 49514214 + 0 NA intron (ENSMUSG00000043631.8, intron 1 of 8) protein_coding-intron (ENSMUSG00000021391.10, intron 5 of 7) 9030 ENSMUSG00000043631.8 ENSMUSG00000043631 ENSMUST00000222592 Ecm2 protein_coding Interval_71735 chr17 25772762 25774069 + 0 NA promoter-TSS (ENSMUSG00000002280.11) protein_coding-promoter-TSS (ENSMUSG00000002280.11) -389 ENSMUSG00000002280.11 ENSMUSG00000002280 ENSMUST00000130861 Ciao3 protein_coding Interval_87281 chr19 47368465 47369215 + 0 NA intron (ENSMUSG00000053617.12, intron 3 of 4) protein_coding-intron (ENSMUSG00000053617.12, intron 4 of 14) 41519 ENSMUSG00000053617.12 ENSMUSG00000053617 ENSMUST00000237828 Sh3pxd2a protein_coding Interval_35469 chr12 22874830 22875036 + 0 NA Intergenic Intergenic -2314 ENSMUSG00000114119.1 ENSMUSG00000114119 ENSMUST00000221267 Gm48039 processed_pseudogene Interval_65102 chr16 19236618 19237437 + 0 NA promoter-TSS (ENSMUSG00000104927.1) lincRNA-promoter-TSS (ENSMUSG00000104927.1) -251 ENSMUSG00000104927.1 ENSMUSG00000104927 ENSMUST00000197818 Gm43388 lincRNA Interval_13519 chr10 19014613 19016339 + 0 NA promoter-TSS (ENSMUSG00000019850.11) protein_coding-promoter-TSS (ENSMUSG00000019850.11) -6631 ENSMUSG00000019850.11 ENSMUSG00000019850 ENSMUST00000146388 Tnfaip3 protein_coding Interval_107654 chr3 109491179 109492052 + 0 NA intron (ENSMUSG00000033721.16, intron 2 of 16) protein_coding-intron (ENSMUSG00000033721.16, intron 2 of 26) -155909 ENSMUSG00000033721.16 ENSMUSG00000033721 ENSMUST00000148866 Vav3 protein_coding Interval_132300 chr5 144027146 144027344 + 0 NA promoter-TSS (ENSMUSG00000029618.13) protein_coding-promoter-TSS (ENSMUSG00000029618.13) -575 ENSMUSG00000029618.13 ENSMUSG00000029618 ENSMUST00000110702 Ocm protein_coding Interval_18937 chr10 93263455 93263749 + 0 NA intron (ENSMUSG00000020015.10, intron 3 of 3) protein_coding-intron (ENSMUSG00000008398.16, intron 3 of 4) 24579 ENSMUSG00000020015.10 ENSMUSG00000020015 ENSMUST00000216729 Cdk17 protein_coding Interval_44713 chr13 47576324 47576922 + 0 NA Intergenic Intergenic -90927 ENSMUSG00000114509.1 ENSMUSG00000114509 ENSMUST00000223996 4930471G24Rik lincRNA Interval_49578 chr13 113151457 113151874 + 0 NA promoter-TSS (ENSMUSG00000116741.1) unprocessed_pseudogene-promoter-TSS (ENSMUSG00000116741.1) -215 ENSMUSG00000116741.1 ENSMUSG00000116741 ENSMUST00000232170 Gm49564 unprocessed_pseudogene Interval_40433 chr12 104857586 104858107 + 0 NA exon (ENSMUSG00000021101.2, exon 1 of 3) lincRNA-exon (ENSMUSG00000021101.2, exon 1 of 3) 475 ENSMUSG00000021101.2 ENSMUSG00000021101 ENSMUST00000021520 4930408O17Rik lincRNA Interval_28060 chr11 72566934 72567207 + 0 NA Intergenic Intergenic 6260 ENSMUSG00000081675.1 ENSMUSG00000081675 ENSMUST00000120676 Gm12712 processed_pseudogene Interval_18486 chr10 86610142 86610499 + 0 NA Intergenic Intergenic 6028 ENSMUSG00000112078.1 ENSMUSG00000112078 ENSMUST00000219709 Gm48466 processed_pseudogene Interval_93372 chr2 72475654 72477221 + 0 NA promoter-TSS (ENSMUSG00000055612.15) protein_coding-promoter-TSS (ENSMUSG00000055612.15) 184 ENSMUSG00000055612.15 ENSMUSG00000055612 ENSMUST00000137880 Cdca7 protein_coding Interval_147070 chr7 60630925 60631792 + 0 NA Intergenic Intergenic -12533 ENSMUSG00000109447.1 ENSMUSG00000109447 ENSMUST00000208725 Gm3198 processed_pseudogene Interval_104044 chr3 57651252 57652042 + 0 NA promoter-TSS (ENSMUSG00000036513.15) protein_coding-promoter-TSS (ENSMUSG00000036513.15) 68 ENSMUSG00000036513.15 ENSMUSG00000036513 ENSMUST00000163087 Commd2 protein_coding Interval_159484 chr8 95012542 95013046 + 0 NA intron (ENSMUSG00000031785.16, intron 13 of 14) protein_coding-intron (ENSMUSG00000031785.16, intron 13 of 13) -8000 ENSMUSG00000060470.7 ENSMUSG00000060470 ENSMUST00000212570 Adgrg3 protein_coding Interval_137826 chr6 82772007 82774937 + 0 NA promoter-TSS (ENSMUSG00000000628.10) protein_coding-promoter-TSS (ENSMUSG00000000628.10) -109 ENSMUSG00000000628.10 ENSMUSG00000000628 ENSMUST00000169270 Hk2 protein_coding Interval_74262 chr17 47780042 47781245 + 0 NA intron (ENSMUSG00000023990.18, intron 2 of 3) protein_coding-intron (ENSMUSG00000023990.18, intron 1 of 8) -7267 ENSMUSG00000023990.18 ENSMUSG00000023990 ENSMUST00000140715 Tfeb protein_coding Interval_2355 chr1 38358904 38359320 + 0 NA intron (ENSMUSG00000037138.18, intron 6 of 22) protein_coding-intron (ENSMUSG00000037138.18, intron 6 of 7) -25837 ENSMUSG00000087131.7 ENSMUSG00000087131 ENSMUST00000131663 Gm16152 antisense Interval_17743 chr10 79852518 79855381 + 0 NA promoter-TSS (ENSMUSG00000006498.16) protein_coding-promoter-TSS (ENSMUSG00000006498.16) -478 ENSMUSG00000006498.16 ENSMUSG00000006498 ENSMUST00000169580 Ptbp1 protein_coding Interval_57796 chr15 20323294 20323804 + 0 NA Intergenic Intergenic -5941 ENSMUSG00000115086.1 ENSMUSG00000115086 ENSMUST00000227779 Gm49177 processed_pseudogene Interval_138495 chr6 88690906 88691886 + 0 NA Intergenic Intergenic 34464 ENSMUSG00000097730.3 ENSMUSG00000097730 ENSMUST00000181064 Gm26588 antisense Interval_45272 chr13 53783429 53783921 + 0 NA Intergenic Intergenic 7048 ENSMUSG00000114143.1 ENSMUSG00000114143 ENSMUST00000221931 Gm48548 lincRNA Interval_164839 chr9 42388441 42389069 + 0 NA intron (ENSMUSG00000110937.1, intron 2 of 2) protein_coding-intron (ENSMUSG00000037705.13, intron 4 of 23) 2893 ENSMUSG00000110937.1 ENSMUSG00000110937 ENSMUST00000215213 Gm47629 antisense Interval_53375 chr14 56751105 56752267 + 0 NA intron (ENSMUSG00000021938.12, intron 4 of 4) protein_coding-intron (ENSMUSG00000021938.12, intron 5 of 8) 26241 ENSMUSG00000021938.12 ENSMUSG00000021938 ENSMUST00000168575 Pspc1 protein_coding Interval_82038 chr18 67307620 67309146 + 0 NA promoter-TSS (ENSMUSG00000024525.7) protein_coding-promoter-TSS (ENSMUSG00000024525.7) -206 ENSMUSG00000024525.7 ENSMUSG00000024525 ENSMUST00000237149 Impa2 protein_coding Interval_88141 chr19 59516707 59516899 + 0 NA intron (ENSMUSG00000100119.1, intron 2 of 4) lincRNA-intron (ENSMUSG00000100119.1, intron 2 of 4) -23648 ENSMUSG00000118118.1 ENSMUSG00000118118 ENSMUST00000238140 Gm18161 processed_pseudogene Interval_156052 chr8 43237605 43238734 + 0 NA Intergenic Intergenic 38201 ENSMUSG00000109974.1 ENSMUSG00000109974 ENSMUST00000209342 Gm2221 processed_pseudogene Interval_31660 chr11 102087008 102089703 + 0 NA promoter-TSS (ENSMUSG00000017314.12) protein_coding-promoter-TSS (ENSMUSG00000017314.12) -2617 ENSMUSG00000017314.12 ENSMUSG00000017314 ENSMUST00000132687 Mpp2 protein_coding Interval_136105 chr6 50999273 50999666 + 0 NA Intergenic Intergenic 32201 ENSMUSG00000108153.1 ENSMUSG00000108153 ENSMUST00000203677 Gm44402 processed_pseudogene Interval_92023 chr2 52638328 52638642 + 0 NA intron (ENSMUSG00000017412.15, intron 2 of 13) protein_coding-intron (ENSMUSG00000017412.15, intron 2 of 13) 18731 ENSMUSG00000025201.7 ENSMUSG00000025201 ENSMUST00000183232 Bloc1s2-ps processed_pseudogene Interval_139961 chr6 113075981 113077952 + 0 NA promoter-TSS (ENSMUSG00000034269.12) protein_coding-promoter-TSS (ENSMUSG00000034269.12) 225 ENSMUSG00000086429.9 ENSMUSG00000086429 ENSMUST00000159544 Gt(ROSA)26Sor antisense Interval_4512 chr1 74730312 74731011 + 0 NA intron (ENSMUSG00000026170.6, intron 1 of 8) protein_coding-intron (ENSMUSG00000026170.6, intron 1 of 8) -4690 ENSMUSG00000026170.6 ENSMUSG00000026170 ENSMUST00000189083 Cyp27a1 protein_coding Interval_17000 chr10 70357836 70360716 + 0 NA Intergenic Intergenic 20974 ENSMUSG00000112676.1 ENSMUSG00000112676 ENSMUST00000219977 Gm20108 processed_pseudogene Interval_152791 chr7 137616968 137617202 + 0 NA Intergenic Intergenic -32004 ENSMUSG00000110145.1 ENSMUSG00000110145 ENSMUST00000210825 Gm45683 TEC Interval_145683 chr7 37360370 37360557 + 0 NA intron (ENSMUSG00000043456.17, intron 3 of 3) protein_coding-intron (ENSMUSG00000043456.17, intron 3 of 3) 6167 ENSMUSG00000108507.1 ENSMUSG00000108507 ENSMUST00000206785 6720469O03Rik TEC Interval_138777 chr6 91771822 91772112 + 0 NA intron (ENSMUSG00000030098.15, intron 21 of 23) protein_coding-intron (ENSMUSG00000030098.15, intron 20 of 22) 21783 ENSMUSG00000030096.8 ENSMUSG00000030096 ENSMUST00000206988 Slc6a6 protein_coding Interval_24508 chr11 33849846 33850111 + 0 NA intron (ENSMUSG00000053519.17, intron 1 of 7) protein_coding-intron (ENSMUSG00000053519.17, intron 1 of 3) -113035 ENSMUSG00000020155.2 ENSMUSG00000020155 ENSMUST00000020362 Kcnmb1 protein_coding Interval_157897 chr8 75315578 75316485 + 0 NA Intergenic Intergenic 21461 ENSMUSG00000110432.1 ENSMUSG00000110432 ENSMUST00000213023 Gm45907 processed_pseudogene Interval_1057 chr1 14631180 14632769 + 0 NA Intergenic Intergenic -120963 ENSMUSG00000054493.2 ENSMUSG00000054493 ENSMUST00000067599 Gm9947 antisense Interval_25122 chr11 44318432 44319206 + 0 NA Intergenic Intergenic -51610 ENSMUSG00000086738.1 ENSMUSG00000086738 ENSMUST00000145584 Gm12154 lincRNA Interval_159499 chr8 95098813 95099400 + 0 NA TTS (ENSMUSG00000031788.14) protein_coding-TTS (ENSMUSG00000031788.14) -8430 ENSMUSG00000110516.1 ENSMUSG00000110516 ENSMUST00000212448 Gm45758 TEC Interval_173881 chrX 106917133 106917757 + 0 NA Intergenic Intergenic -3180 ENSMUSG00000049929.7 ENSMUSG00000049929 ENSMUST00000060576 Lpar4 protein_coding Interval_90970 chr2 33821510 33822251 + 0 NA intron (ENSMUSG00000038740.9, intron 6 of 7) protein_coding-intron (ENSMUSG00000038740.9, intron 6 of 9) 8923 ENSMUSG00000089596.1 ENSMUSG00000089596 ENSMUST00000158971 Nron misc_RNA Interval_145667 chr7 37043102 37044099 + 0 NA Intergenic Intergenic 85092 ENSMUSG00000101342.1 ENSMUSG00000101342 ENSMUST00000190381 Gm28078 lincRNA Interval_3756 chr1 62828025 62828529 + 0 NA intron (ENSMUSG00000100426.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000100426.1, intron 1 of 1) 4093 ENSMUSG00000100426.1 ENSMUSG00000100426 ENSMUST00000189802 Gm4208 lincRNA Interval_47415 chr13 83725123 83725456 + 0 NA exon (ENSMUSG00000097265.1, exon 2 of 2) lincRNA-exon (ENSMUSG00000097265.1, exon 2 of 2) 4293 ENSMUSG00000097265.1 ENSMUSG00000097265 ENSMUST00000181705 Gm26803 lincRNA Interval_76137 chr17 75422004 75424912 + 0 NA Intergenic Intergenic -12438 ENSMUSG00000071042.12 ENSMUSG00000071042 ENSMUST00000234011 Rasgrp3 protein_coding Interval_62477 chr15 93336002 93337705 + 0 NA promoter-TSS (ENSMUSG00000022634.9) protein_coding-promoter-TSS (ENSMUSG00000022634.9) 82 ENSMUSG00000022634.9 ENSMUSG00000022634 ENSMUST00000133736 Yaf2 protein_coding Interval_110050 chr3 152763220 152764056 + 0 NA exon (ENSMUSG00000039047.17, exon 1 of 2) protein_coding-exon (ENSMUSG00000039047.17, exon 1 of 2) 18423 ENSMUSG00000090095.1 ENSMUSG00000090095 ENSMUST00000161849 Rpl29-ps1 processed_pseudogene Interval_139685 chr6 107004678 107005388 + 0 NA Intergenic Intergenic 3581 ENSMUSG00000094963.1 ENSMUSG00000094963 ENSMUST00000180326 Gm22418 snRNA Interval_147251 chr7 65097770 65098255 + 0 NA intron (ENSMUSG00000030518.17, intron 1 of 3) protein_coding-intron (ENSMUSG00000030518.17, intron 1 of 9) -72630 ENSMUSG00000108745.1 ENSMUSG00000108745 ENSMUST00000205552 Gm17908 processed_pseudogene Interval_128870 chr5 115760357 115761106 + 0 NA Intergenic Intergenic 41428 ENSMUSG00000083833.4 ENSMUSG00000083833 ENSMUST00000118829 Gm13841 processed_pseudogene Interval_105256 chr3 84266135 84266990 + 0 NA intron (ENSMUSG00000027993.16, intron 1 of 4) protein_coding-intron (ENSMUSG00000027993.16, intron 1 of 11) 40315 ENSMUSG00000027993.16 ENSMUSG00000027993 ENSMUST00000197845 Trim2 protein_coding Interval_19301 chr10 96336147 96336365 + 0 NA intron (ENSMUSG00000112749.1, intron 4 of 4) lincRNA-intron (ENSMUSG00000112749.1, intron 4 of 4) 9568 ENSMUSG00000112749.1 ENSMUSG00000112749 ENSMUST00000218388 Gm48428 lincRNA Interval_77255 chr17 87609585 87609906 + 0 NA Intergenic Intergenic -26234 ENSMUSG00000045394.9 ENSMUSG00000045394 ENSMUST00000234623 Epcam protein_coding Interval_167991 chr9 75293847 75294203 + 0 NA exon (ENSMUSG00000033590.8, exon 35 of 41) protein_coding-exon (ENSMUSG00000033590.8, exon 35 of 41) 20846 ENSMUSG00000111348.1 ENSMUSG00000111348 ENSMUST00000216737 Gm19531 antisense Interval_136727 chr6 58650615 58651283 + 0 NA intron (ENSMUSG00000029802.13, intron 2 of 5) protein_coding-intron (ENSMUSG00000029802.13, intron 1 of 15) 10367 ENSMUSG00000029802.13 ENSMUSG00000029802 ENSMUST00000134426 Abcg2 protein_coding Interval_22152 chr11 6654647 6655322 + 0 NA intron (ENSMUSG00000086373.8, intron 1 of 2) transcribed_processed_pseudogene-intron (ENSMUSG00000086373.8, intron 3 of 5) -3581 ENSMUSG00000041046.7 ENSMUSG00000041046 ENSMUST00000139540 Ramp3 protein_coding Interval_68069 chr16 64841989 64842390 + 0 NA intron (ENSMUSG00000047141.5, intron 1 of 8) protein_coding-intron (ENSMUSG00000047141.5, intron 1 of 8) 9463 ENSMUSG00000047141.5 ENSMUSG00000047141 ENSMUST00000052588 Zfp654 protein_coding Interval_43768 chr13 36240869 36241064 + 0 NA intron (ENSMUSG00000021420.13, intron 2 of 3) protein_coding-intron (ENSMUSG00000021420.13, intron 3 of 6) -11393 ENSMUSG00000114617.1 ENSMUSG00000114617 ENSMUST00000225563 Gm48766 TEC Interval_29918 chr11 87736612 87737938 + 0 NA promoter-TSS (ENSMUSG00000020485.14) protein_coding-promoter-TSS (ENSMUSG00000020485.14) -277 ENSMUSG00000020485.14 ENSMUSG00000020485 ENSMUST00000141169 Supt4a protein_coding Interval_12264 chr1 191223796 191225144 + 0 NA promoter-TSS (ENSMUSG00000073478.6) lincRNA-promoter-TSS (ENSMUSG00000073478.6) -4 ENSMUSG00000073478.6 ENSMUSG00000073478 ENSMUST00000194375 D730003I15Rik lincRNA Interval_66503 chr16 34440866 34441348 + 0 NA intron (ENSMUSG00000061751.16, intron 1 of 36) protein_coding-intron (ENSMUSG00000061751.16, intron 1 of 59) -225210 ENSMUSG00000022832.11 ENSMUSG00000022832 ENSMUST00000231612 Ropn1 protein_coding Interval_90292 chr2 29603442 29605133 + 0 NA Intergenic Intergenic -39528 ENSMUSG00000039844.20 ENSMUSG00000039844 ENSMUST00000123953 Rapgef1 protein_coding Interval_141752 chr6 134229664 134231482 + 0 NA intron (ENSMUSG00000030199.16, intron 3 of 4) protein_coding-intron (ENSMUSG00000030199.16, intron 3 of 7) -3027 ENSMUSG00000030199.16 ENSMUSG00000030199 ENSMUST00000145869 Etv6 protein_coding Interval_143704 chr7 15830720 15831670 + 0 NA Intergenic Intergenic -5380 ENSMUSG00000092576.3 ENSMUSG00000092576 ENSMUST00000173825 Obox4-ps35 lincRNA Interval_165307 chr9 46174997 46175841 + 0 NA intron (ENSMUSG00000034135.15, intron 1 of 20) protein_coding-intron (ENSMUSG00000034135.15, intron 4 of 22) 52289 ENSMUSG00000034135.15 ENSMUSG00000034135 ENSMUST00000138338 Sik3 protein_coding Interval_74939 chr17 57584900 57585254 + 0 NA Intergenic Intergenic -27112 ENSMUSG00000117223.1 ENSMUSG00000117223 ENSMUST00000233817 Gm49842 unprocessed_pseudogene Interval_54576 chr14 70765695 70767653 + 0 NA promoter-TSS (ENSMUSG00000022100.14) protein_coding-promoter-TSS (ENSMUSG00000022100.14) -9205 ENSMUSG00000022102.13 ENSMUSG00000022102 ENSMUST00000164691 Dok2 protein_coding Interval_63072 chr15 98962457 98962961 + 0 NA Intergenic Intergenic -9006 ENSMUSG00000072235.6 ENSMUSG00000072235 ENSMUST00000097014 Tuba1a protein_coding Interval_150493 chr7 111181656 111182745 + 0 NA Intergenic Intergenic -59516 ENSMUSG00000110424.1 ENSMUSG00000110424 ENSMUST00000210340 1700012D14Rik processed_transcript Interval_87509 chr19 53127646 53129340 + 0 NA promoter-TSS (ENSMUSG00000118233.1) lincRNA-promoter-TSS (ENSMUSG00000118233.1) -191 ENSMUSG00000118233.1 ENSMUSG00000118233 ENSMUST00000236104 Gm30381 lincRNA Interval_129440 chr5 120171889 120172385 + 0 NA promoter-TSS (ENSMUSG00000029594.12) protein_coding-promoter-TSS (ENSMUSG00000029594.12) -3588 ENSMUSG00000029594.12 ENSMUSG00000029594 ENSMUST00000202788 Rbm19 protein_coding Interval_60488 chr15 74287427 74288688 + 0 NA Intergenic Intergenic 152387 ENSMUSG00000118581.1 ENSMUSG00000118581 ENSMUST00000239328 AC119183.1 unitary_pseudogene Interval_109207 chr3 137888021 137889141 + 0 NA intron (ENSMUSG00000074212.7, intron 2 of 3) protein_coding-intron (ENSMUSG00000074212.7, intron 2 of 7) -8563 ENSMUSG00000105748.1 ENSMUSG00000105748 ENSMUST00000197530 Gm43088 TEC Interval_93661 chr2 75668091 75671412 + 0 NA TTS (ENSMUSG00000059005.13) protein_coding-TTS (ENSMUSG00000059005.13) 10433 ENSMUSG00000059005.13 ENSMUSG00000059005 ENSMUST00000141974 Hnrnpa3 protein_coding Interval_39558 chr12 90597386 90597758 + 0 NA Intergenic Intergenic -8927 ENSMUSG00000114032.1 ENSMUSG00000114032 ENSMUST00000222569 Gm2139 processed_pseudogene Interval_171992 chr9 123259605 123261091 + 0 NA exon (ENSMUSG00000054871.5, exon 1 of 1) protein_coding-exon (ENSMUSG00000054871.5, exon 1 of 1) 416 ENSMUSG00000054871.5 ENSMUSG00000054871 ENSMUST00000068140 Tmem158 protein_coding Interval_43223 chr13 25785861 25786073 + 0 NA Intergenic Intergenic -104824 ENSMUSG00000082161.1 ENSMUSG00000082161 ENSMUST00000121436 Gm11350 processed_pseudogene Interval_131001 chr5 134491779 134492468 + 0 NA intron (ENSMUSG00000063146.11, intron 15 of 16) protein_coding-intron (ENSMUSG00000063146.11, intron 14 of 15) -6677 ENSMUSG00000106802.1 ENSMUSG00000106802 ENSMUST00000200763 Gm42885 TEC Interval_103044 chr3 34712107 34713039 + 0 NA intron (ENSMUSG00000105153.4, intron 1 of 4) lincRNA-intron (ENSMUSG00000105153.4, intron 1 of 4) 4089 ENSMUSG00000105153.4 ENSMUSG00000105153 ENSMUST00000198364 Gm3143 lincRNA Interval_31623 chr11 101794855 101795802 + 0 NA Intergenic Intergenic -10018 ENSMUSG00000017724.14 ENSMUSG00000017724 ENSMUST00000154512 Etv4 protein_coding Interval_13032 chr10 9781601 9781814 + 0 NA intron (ENSMUSG00000019790.17, intron 19 of 25) protein_coding-intron (ENSMUSG00000019790.17, intron 21 of 27) -32548 ENSMUSG00000112200.1 ENSMUSG00000112200 ENSMUST00000217958 Gm19161 processed_pseudogene Interval_172137 chrX 7912060 7912790 + 0 NA Intergenic Intergenic 2883 ENSMUSG00000073290.1 ENSMUSG00000073290 ENSMUST00000086274 Gm10490 protein_coding Interval_19539 chr10 102708589 102709079 + 0 NA Intergenic Intergenic -25519 ENSMUSG00000112221.1 ENSMUSG00000112221 ENSMUST00000219679 Gm47142 processed_pseudogene Interval_43411 chr13 30266199 30266779 + 0 NA Intergenic Intergenic 34636 ENSMUSG00000038732.15 ENSMUSG00000038732 ENSMUST00000222095 Mboat1 protein_coding Interval_136394 chr6 54082086 54083125 + 0 NA intron (ENSMUSG00000004633.17, intron 1 of 4) protein_coding-intron (ENSMUSG00000004633.17, intron 1 of 12) 68332 ENSMUSG00000087670.1 ENSMUSG00000087670 ENSMUST00000138767 9530036M11Rik antisense Interval_124712 chr5 53509206 53510153 + 0 NA intron (ENSMUSG00000039191.12, intron 1 of 6) protein_coding-intron (ENSMUSG00000039191.12, intron 1 of 6) 13052 ENSMUSG00000106807.1 ENSMUSG00000106807 ENSMUST00000200950 Gm10441 antisense Interval_52050 chr14 34867229 34867669 + 0 NA intron (ENSMUSG00000041078.7, intron 2 of 15) protein_coding-intron (ENSMUSG00000041078.7, intron 2 of 15) -27160 ENSMUSG00000065481.1 ENSMUSG00000065481 ENSMUST00000083547 Mir346 miRNA Interval_12105 chr1 189772528 189772901 + 0 NA intron (ENSMUSG00000026604.17, intron 1 of 9) protein_coding-intron (ENSMUSG00000026604.17, intron 1 of 18) -54516 ENSMUSG00000102248.1 ENSMUSG00000102248 ENSMUST00000192214 Gm30280 processed_pseudogene Interval_71803 chr17 26195844 26196380 + 0 NA TTS (ENSMUSG00000024182.16) protein_coding-TTS (ENSMUSG00000024182.16) 804 ENSMUSG00000024184.15 ENSMUSG00000024184 ENSMUST00000142410 Pdia2 protein_coding Interval_33115 chr11 114544254 114544795 + 0 NA Intergenic Intergenic -95664 ENSMUSG00000062391.3 ENSMUSG00000062391 ENSMUST00000141088 4932435O22Rik lincRNA Interval_122560 chr5 23805659 23806120 + 0 NA promoter-TSS (ENSMUSG00000028999.15) protein_coding-promoter-TSS (ENSMUSG00000028999.15) 15187 ENSMUSG00000104569.1 ENSMUSG00000104569 ENSMUST00000199495 Gm43054 TEC Interval_76320 chr17 79004331 79004944 + 0 NA intron (ENSMUSG00000024070.15, intron 2 of 18) protein_coding-intron (ENSMUSG00000024070.15, intron 1 of 17) 16179 ENSMUSG00000024070.15 ENSMUSG00000024070 ENSMUST00000130070 Prkd3 protein_coding Interval_140349 chr6 116926454 116926821 + 0 NA Intergenic Intergenic -26882 ENSMUSG00000108225.1 ENSMUSG00000108225 ENSMUST00000203978 Gm43926 processed_pseudogene Interval_431 chr1 5183153 5183961 + 0 NA Intergenic Intergenic 93780 ENSMUSG00000104352.1 ENSMUSG00000104352 ENSMUST00000193351 Gm7182 processed_pseudogene Interval_159409 chr8 94397344 94397745 + 0 NA Intergenic Intergenic 6754 ENSMUSG00000031770.16 ENSMUSG00000031770 ENSMUST00000160866 Herpud1 protein_coding Interval_43442 chr13 30985390 30986464 + 0 NA Intergenic Intergenic 11763 ENSMUSG00000056257.3 ENSMUSG00000056257 ENSMUST00000070258 Gm5447 TEC Interval_100165 chr2 167430669 167432191 + 0 NA intron (ENSMUSG00000039463.14, intron 2 of 16) protein_coding-intron (ENSMUSG00000039463.14, intron 2 of 16) -19625 ENSMUSG00000039463.14 ENSMUSG00000039463 ENSMUST00000148454 Slc9a8 protein_coding Interval_68110 chr16 65190619 65190855 + 0 NA Intergenic Intergenic 5712 ENSMUSG00000116833.1 ENSMUSG00000116833 ENSMUST00000232619 Gm9584 processed_pseudogene Interval_21245 chr10 127438085 127438477 + 0 NA intron (ENSMUSG00000025404.15, intron 1 of 23) protein_coding-intron (ENSMUSG00000025404.15, intron 1 of 23) -21254 ENSMUSG00000025404.15 ENSMUSG00000025404 ENSMUST00000171426 R3hdm2 protein_coding Interval_21922 chr11 5214203 5214446 + 0 NA intron (ENSMUSG00000020393.16, intron 2 of 3) protein_coding-intron (ENSMUSG00000020393.16, intron 4 of 8) 24124 ENSMUSG00000020393.16 ENSMUSG00000020393 ENSMUST00000151978 Kremen1 protein_coding Interval_169323 chr9 96394620 96395097 + 0 NA Intergenic Intergenic 43280 ENSMUSG00000056418.3 ENSMUSG00000056418 ENSMUST00000070500 BC043934 lincRNA Interval_3670 chr1 60556579 60556785 + 0 NA intron (ENSMUSG00000026014.15, intron 1 of 3) protein_coding-intron (ENSMUSG00000026014.15, intron 1 of 15) 19662 ENSMUSG00000084400.1 ENSMUSG00000084400 ENSMUST00000117433 Gm11576 processed_pseudogene Interval_168517 chr9 82959877 82960203 + 0 NA intron (ENSMUSG00000032253.13, intron 4 of 5) protein_coding-intron (ENSMUSG00000032253.13, intron 4 of 39) -48563 ENSMUSG00000111839.1 ENSMUSG00000111839 ENSMUST00000216894 Gm39383 lincRNA Interval_60429 chr15 73695420 73696184 + 0 NA exon (ENSMUSG00000045281.5, exon 2 of 2) protein_coding-exon (ENSMUSG00000045281.5, exon 2 of 2) 11703 ENSMUSG00000045281.5 ENSMUSG00000045281 ENSMUST00000064166 Gpr20 protein_coding Interval_28591 chr11 77017761 77018072 + 0 NA promoter-TSS (ENSMUSG00000020838.12) protein_coding-promoter-TSS (ENSMUSG00000020838.12) -261 ENSMUSG00000020838.12 ENSMUSG00000020838 ENSMUST00000137819 Slc6a4 protein_coding Interval_73186 chr17 35358123 35360100 + 0 NA intron (ENSMUSG00000092253.1, intron 1 of 2) unprocessed_pseudogene-intron (ENSMUSG00000092253.1, intron 1 of 2) 122 ENSMUSG00000092253.1 ENSMUSG00000092253 ENSMUST00000172583 H2-Q3 unprocessed_pseudogene Interval_87788 chr19 55877567 55878116 + 0 NA intron (ENSMUSG00000024985.20, intron 5 of 7) protein_coding-intron (ENSMUSG00000024985.20, intron 4 of 11) 36169 ENSMUSG00000099746.1 ENSMUSG00000099746 ENSMUST00000190974 Ppnr sense_intronic Interval_51660 chr14 31195490 31196562 + 0 NA intron (ENSMUSG00000021910.15, intron 3 of 13) protein_coding-intron (ENSMUSG00000021910.15, intron 3 of 20) -4937 ENSMUSG00000021910.15 ENSMUSG00000021910 ENSMUST00000167602 Nisch protein_coding Interval_100650 chr2 170771629 170772813 + 0 NA intron (ENSMUSG00000027560.4, intron 1 of 7) protein_coding-intron (ENSMUSG00000027560.4, intron 1 of 7) 40414 ENSMUSG00000027560.4 ENSMUSG00000027560 ENSMUST00000029075 Dok5 protein_coding Interval_149298 chr7 97146757 97147815 + 0 NA intron (ENSMUSG00000004508.6, intron 1 of 9) protein_coding-intron (ENSMUSG00000004508.6, intron 1 of 9) 65510 ENSMUSG00000004508.6 ENSMUSG00000004508 ENSMUST00000206791 Gab2 protein_coding Interval_119485 chr4 137871074 137871305 + 0 NA intron (ENSMUSG00000057530.14, intron 1 of 1) protein_coding-intron (ENSMUSG00000057530.14, intron 1 of 19) 12748 ENSMUSG00000085823.7 ENSMUSG00000085823 ENSMUST00000156022 Gm13012 antisense Interval_9495 chr1 157798337 157798643 + 0 NA Intergenic Intergenic -141895 ENSMUSG00000102789.1 ENSMUSG00000102789 ENSMUST00000192097 Gm38256 TEC Interval_141789 chr6 134530021 134530450 + 0 NA intron (ENSMUSG00000030201.15, intron 1 of 3) protein_coding-intron (ENSMUSG00000030201.15, intron 2 of 22) -62474 ENSMUSG00000030201.15 ENSMUSG00000030201 ENSMUST00000203235 Lrp6 protein_coding Interval_25593 chr11 50007576 50008937 + 0 NA Intergenic Intergenic -17091 ENSMUSG00000020376.17 ENSMUSG00000020376 ENSMUST00000143607 Rnf130 protein_coding Interval_62902 chr15 97802418 97803136 + 0 NA exon (ENSMUSG00000022475.19, exon 13 of 25) protein_coding-exon (ENSMUSG00000022475.19, exon 13 of 25) 24257 ENSMUSG00000081534.3 ENSMUSG00000081534 ENSMUST00000229084 Slc48a1 protein_coding Interval_53242 chr14 55527735 55528458 + 0 NA TTS (ENSMUSG00000115778.1) antisense-TTS (ENSMUSG00000115778.1) -3489 ENSMUSG00000040632.16 ENSMUSG00000040632 ENSMUST00000228902 Nrl protein_coding Interval_70455 chr17 10341415 10343285 + 0 NA Intergenic Intergenic 17748 ENSMUSG00000099384.6 ENSMUSG00000099384 ENSMUST00000188715 1700110C19Rik lincRNA Interval_65649 chr16 24801649 24802247 + 0 NA intron (ENSMUSG00000033306.15, intron 3 of 7) protein_coding-intron (ENSMUSG00000033306.15, intron 8 of 12) -25907 ENSMUSG00000065494.1 ENSMUSG00000065494 ENSMUST00000083560 Mir28a miRNA Interval_123500 chr5 32997765 32997952 + 0 NA Intergenic Intergenic 13288 ENSMUSG00000105929.1 ENSMUSG00000105929 ENSMUST00000196072 Gm43693 TEC Interval_13373 chr10 17490614 17491664 + 0 NA Intergenic Intergenic -23591 ENSMUSG00000112296.1 ENSMUSG00000112296 ENSMUST00000219028 Gm47768 processed_pseudogene Interval_2074 chr1 36254631 36255633 + 0 NA Intergenic Intergenic -10412 ENSMUSG00000037470.14 ENSMUSG00000037470 ENSMUST00000192159 Uggt1 protein_coding Interval_32184 chr11 105978012 105979028 + 0 NA intron (ENSMUSG00000020681.14, intron 11 of 19) protein_coding-intron (ENSMUSG00000020681.14, intron 15 of 24) 1915 ENSMUSG00000020681.14 ENSMUSG00000020681 ENSMUST00000151657 Ace protein_coding Interval_120699 chr4 150164501 150165321 + 0 NA intron (ENSMUSG00000062064.6, intron 9 of 11) protein_coding-intron (ENSMUSG00000062064.6, intron 9 of 11) 7083 ENSMUSG00000062064.6 ENSMUSG00000062064 ENSMUST00000133379 Slc2a7 protein_coding Interval_15066 chr10 42299656 42300086 + 0 NA Intergenic Intergenic -9904 ENSMUSG00000088165.1 ENSMUSG00000088165 ENSMUST00000157540 Gm23533 misc_RNA Interval_121864 chr5 8974824 8975082 + 0 NA intron (ENSMUSG00000003623.4, intron 4 of 6) protein_coding-intron (ENSMUSG00000003623.4, intron 10 of 17) 3005 ENSMUSG00000078183.3 ENSMUSG00000078183 ENSMUST00000120584 Gm15610 processed_pseudogene Interval_93559 chr2 74153226 74153438 + 0 NA Intergenic Intergenic 17575 ENSMUSG00000084791.1 ENSMUSG00000084791 ENSMUST00000132332 Gm13667 lincRNA Interval_163492 chr9 21698840 21699483 + 0 NA intron (ENSMUSG00000032187.16, intron 29 of 33) protein_coding-intron (ENSMUSG00000032187.16, intron 29 of 33) 21248 ENSMUSG00000099192.1 ENSMUSG00000099192 ENSMUST00000184017 Gm27373 misc_RNA Interval_146163 chr7 44444985 44446090 + 0 NA intron (ENSMUSG00000047085.14, intron 2 of 2) protein_coding-intron (ENSMUSG00000047085.14, intron 2 of 2) 2800 ENSMUSG00000047085.14 ENSMUSG00000047085 ENSMUST00000156093 Lrrc4b protein_coding Interval_112634 chr4 43715432 43715664 + 0 NA Intergenic Intergenic -5317 ENSMUSG00000046450.3 ENSMUSG00000046450 ENSMUST00000055401 Olfr71 protein_coding Interval_125334 chr5 66251729 66252075 + 0 NA Intergenic Intergenic -7995 ENSMUSG00000029206.13 ENSMUSG00000029206 ENSMUST00000031109 Nsun7 protein_coding Interval_35982 chr12 33109675 33110532 + 0 NA Intergenic Intergenic -1859 ENSMUSG00000084979.1 ENSMUSG00000084979 ENSMUST00000140569 Gm16267 lincRNA Interval_7926 chr1 134611079 134611907 + 0 NA intron (ENSMUSG00000042207.17, intron 14 of 25) protein_coding-intron (ENSMUSG00000042207.17, intron 14 of 26) -11307 ENSMUSG00000042207.17 ENSMUSG00000042207 ENSMUST00000191572 Kdm5b protein_coding Interval_129868 chr5 122820817 122821761 + 0 NA promoter-TSS (ENSMUSG00000029472.13) protein_coding-promoter-TSS (ENSMUSG00000029472.13) 5 ENSMUSG00000029472.13 ENSMUSG00000029472 ENSMUST00000197331 Anapc5 protein_coding Interval_103450 chr3 41627599 41627825 + 0 NA intron (ENSMUSG00000059834.12, intron 20 of 20) protein_coding-intron (ENSMUSG00000059834.12, intron 20 of 20) 21538 ENSMUSG00000102436.1 ENSMUSG00000102436 ENSMUST00000193690 Gm38047 TEC Interval_173142 chrX 73421990 73422625 + 0 NA exon (ENSMUSG00000031374.13, exon 6 of 6) protein_coding-exon (ENSMUSG00000031374.13, exon 6 of 6) 10747 ENSMUSG00000031374.13 ENSMUSG00000031374 ENSMUST00000086470 Zfp92 protein_coding Interval_117376 chr4 123322662 123324295 + 0 NA exon (ENSMUSG00000076436.1, exon 1 of 1) protein_coding-exon (ENSMUSG00000076436.1, exon 1 of 1) 156 ENSMUSG00000076436.1 ENSMUSG00000076436 ENSMUST00000102640 Oxct2a protein_coding Interval_24386 chr11 32863253 32863501 + 0 NA Intergenic Intergenic 17563 ENSMUSG00000083303.1 ENSMUSG00000083303 ENSMUST00000121601 Gm12110 processed_pseudogene Interval_41119 chr12 111301572 111302456 + 0 NA exon (ENSMUSG00000021279.5, exon 28 of 37) protein_coding-exon (ENSMUSG00000021279.5, exon 28 of 37) 12523 ENSMUSG00000021279.5 ENSMUSG00000021279 ENSMUST00000222196 Cdc42bpb protein_coding Interval_162396 chr8 127939628 127939820 + 0 NA Intergenic Intergenic 338501 ENSMUSG00000099326.1 ENSMUSG00000099326 ENSMUST00000184910 Mir21c miRNA Interval_52485 chr14 46901170 46901513 + 0 NA intron (ENSMUSG00000021838.17, intron 3 of 12) protein_coding-intron (ENSMUSG00000021838.17, intron 2 of 12) 7821 ENSMUSG00000114996.1 ENSMUSG00000114996 ENSMUST00000228844 Gm48958 TEC Interval_171213 chr9 115266371 115266562 + 0 NA intron (ENSMUSG00000032437.10, intron 4 of 15) protein_coding-intron (ENSMUSG00000032437.10, intron 4 of 15) 15515 ENSMUSG00000111564.1 ENSMUSG00000111564 ENSMUST00000214793 Stmn1-rs1 processed_pseudogene Interval_10265 chr1 167672447 167673424 + 0 NA Intergenic Intergenic -16302 ENSMUSG00000026686.14 ENSMUSG00000026686 ENSMUST00000028003 Lmx1a protein_coding Interval_162790 chr9 9131618 9131929 + 0 NA intron (ENSMUSG00000050730.17, intron 3 of 5) protein_coding-intron (ENSMUSG00000050730.17, intron 3 of 22) -104515 ENSMUSG00000085253.3 ENSMUSG00000085253 ENSMUST00000150263 Gm16833 antisense Interval_117714 chr4 125728065 125729976 + 0 NA Intergenic Intergenic 193397 ENSMUSG00000085562.7 ENSMUSG00000085562 ENSMUST00000144539 2610028E06Rik lincRNA Interval_106227 chr3 94786016 94787609 + 0 NA promoter-TSS (ENSMUSG00000068876.16) protein_coding-promoter-TSS (ENSMUSG00000068876.16) -297 ENSMUSG00000068876.16 ENSMUSG00000068876 ENSMUST00000155485 Cgn protein_coding Interval_110597 chr4 4432566 4433293 + 0 NA Intergenic Intergenic 95790 ENSMUSG00000085155.3 ENSMUSG00000085155 ENSMUST00000136880 Gm11780 processed_pseudogene Interval_56683 chr14 121358952 121360001 + 0 NA intron (ENSMUSG00000063410.8, intron 1 of 1) protein_coding-intron (ENSMUSG00000063410.8, intron 1 of 10) 20535 ENSMUSG00000063410.8 ENSMUSG00000063410 ENSMUST00000226158 Stk24 protein_coding Interval_161172 chr8 118090814 118091257 + 0 NA Intergenic Intergenic -29919 ENSMUSG00000065028.1 ENSMUSG00000065028 ENSMUST00000083094 Gm25200 snoRNA Interval_108683 chr3 130070643 130071616 + 0 NA Intergenic Intergenic 2717 ENSMUSG00000063328.6 ENSMUSG00000063328 ENSMUST00000076703 Gm9396 processed_pseudogene Interval_43373 chr13 29823720 29825063 + 0 NA intron (ENSMUSG00000006191.17, intron 4 of 5) protein_coding-intron (ENSMUSG00000006191.17, intron 4 of 15) -115892 ENSMUSG00000086893.1 ENSMUSG00000086893 ENSMUST00000144277 Gm11365 antisense Interval_160623 chr8 111112548 111112769 + 0 NA TTS (ENSMUSG00000033624.10) protein_coding-TTS (ENSMUSG00000033624.10) 18003 ENSMUSG00000033624.10 ENSMUSG00000033624 ENSMUST00000144377 Pdpr protein_coding Interval_41893 chr13 3958636 3959401 + 0 NA Intergenic Intergenic -1776 ENSMUSG00000093010.1 ENSMUSG00000093010 ENSMUST00000175269 Gm22460 miRNA Interval_42664 chr13 17785769 17786121 + 0 NA intron (ENSMUSG00000041297.8, intron 1 of 13) protein_coding-intron (ENSMUSG00000041297.8, intron 1 of 13) 19152 ENSMUSG00000041297.8 ENSMUSG00000041297 ENSMUST00000221775 Cdk13 protein_coding Interval_126785 chr5 92918011 92919767 + 0 NA intron (ENSMUSG00000029381.16, intron 1 of 9) protein_coding-intron (ENSMUSG00000029381.16, intron 1 of 9) 62418 ENSMUSG00000029381.16 ENSMUSG00000029381 ENSMUST00000172752 Shroom3 protein_coding Interval_50637 chr14 16981379 16981614 + 0 NA Intergenic Intergenic 27890 ENSMUSG00000114202.1 ENSMUSG00000114202 ENSMUST00000224816 Gm18078 processed_pseudogene Interval_115544 chr4 100588059 100588996 + 0 NA Intergenic Intergenic 7249 ENSMUSG00000082601.1 ENSMUSG00000082601 ENSMUST00000118145 Gm12700 processed_pseudogene Interval_42996 chr13 22747617 22748259 + 0 NA Intergenic Intergenic -9845 ENSMUSG00000081531.1 ENSMUSG00000081531 ENSMUST00000121318 Vmn1r-ps113 unprocessed_pseudogene Interval_114143 chr4 64437843 64438194 + 0 NA Intergenic Intergenic -6712 ENSMUSG00000077214.1 ENSMUSG00000077214 ENSMUST00000104026 Gm23950 snoRNA Interval_155202 chr8 27415343 27416227 + 0 NA Intergenic Intergenic -1841 ENSMUSG00000031491.10 ENSMUSG00000031491 ENSMUST00000033882 Chrna6 protein_coding Interval_23606 chr11 23741435 23741637 + 0 NA exon (ENSMUSG00000020275.9, exon 10 of 10) protein_coding-exon (ENSMUSG00000020275.9, exon 10 of 10) 29434 ENSMUSG00000020275.9 ENSMUSG00000020275 ENSMUST00000102864 Rel protein_coding Interval_122383 chr5 21844633 21845181 + 0 NA intron (ENSMUSG00000029015.9, intron 2 of 13) protein_coding-intron (ENSMUSG00000029015.9, intron 4 of 19) -24390 ENSMUSG00000029015.9 ENSMUSG00000029015 ENSMUST00000150012 Slc26a5 protein_coding Interval_100168 chr2 167443194 167443642 + 0 NA intron (ENSMUSG00000039463.14, intron 2 of 6) protein_coding-intron (ENSMUSG00000039463.14, intron 4 of 16) -7637 ENSMUSG00000039463.14 ENSMUSG00000039463 ENSMUST00000148454 Slc9a8 protein_coding Interval_14151 chr10 28124156 28124539 + 0 NA intron (ENSMUSG00000019889.10, intron 1 of 2) protein_coding-intron (ENSMUSG00000019889.10, intron 1 of 31) -58157 ENSMUSG00000112432.1 ENSMUSG00000112432 ENSMUST00000218855 Gm18507 processed_pseudogene Interval_36485 chr12 45854104 45854553 + 0 NA Intergenic Intergenic -117427 ENSMUSG00000112859.1 ENSMUSG00000112859 ENSMUST00000220114 Gm48522 lincRNA Interval_39937 chr12 99923255 99924902 + 0 NA intron (ENSMUSG00000021177.16, intron 13 of 15) protein_coding-intron (ENSMUSG00000021177.16, intron 12 of 14) 19150 ENSMUSG00000113223.1 ENSMUSG00000113223 ENSMUST00000221445 Gm48147 unprocessed_pseudogene Interval_158509 chr8 84164324 84164710 + 0 NA intron (ENSMUSG00000008129.14, intron 5 of 8) protein_coding-intron (ENSMUSG00000008129.14, intron 4 of 7) 7760 ENSMUSG00000080334.1 ENSMUSG00000080334 ENSMUST00000116684 Gm25110 miRNA Interval_119547 chr4 138311257 138312012 + 0 NA intron (ENSMUSG00000028757.4, intron 9 of 10) protein_coding-intron (ENSMUSG00000028757.4, intron 9 of 10) 4566 ENSMUSG00000099200.1 ENSMUSG00000099200 ENSMUST00000183998 Mir7019 miRNA Interval_52249 chr14 41013403 41014421 + 0 NA promoter-TSS (ENSMUSG00000021792.15) protein_coding-promoter-TSS (ENSMUSG00000021792.15) -9379 ENSMUSG00000021792.15 ENSMUSG00000021792 ENSMUST00000152837 Prxl2a protein_coding Interval_160311 chr8 108038952 108039702 + 0 NA intron (ENSMUSG00000038872.10, intron 2 of 4) protein_coding-intron (ENSMUSG00000038872.10, intron 1 of 15) 44768 ENSMUSG00000038872.10 ENSMUSG00000038872 ENSMUST00000043896 Zfhx3 protein_coding Interval_167405 chr9 68765734 68765934 + 0 NA intron (ENSMUSG00000032238.17, intron 1 of 5) protein_coding-intron (ENSMUSG00000032238.17, intron 1 of 10) 111943 ENSMUSG00000032238.17 ENSMUSG00000032238 ENSMUST00000113624 Rora protein_coding Interval_26081 chr11 54008079 54008884 + 0 NA promoter-TSS (ENSMUSG00000020334.6) protein_coding-promoter-TSS (ENSMUSG00000020334.6) 19471 ENSMUSG00000020334.6 ENSMUSG00000020334 ENSMUST00000154369 Slc22a4 protein_coding Interval_101744 chr3 9340539 9341424 + 0 NA Intergenic Intergenic -61194 ENSMUSG00000088229.1 ENSMUSG00000088229 ENSMUST00000157604 Gm22604 misc_RNA Interval_42804 chr13 19773440 19773961 + 0 NA intron (ENSMUSG00000053101.3, intron 1 of 2) protein_coding-intron (ENSMUSG00000053101.3, intron 3 of 4) -40749 ENSMUSG00000047462.9 ENSMUSG00000047462 ENSMUST00000151029 Gpr141b protein_coding Interval_109016 chr3 135105313 135105548 + 0 NA Intergenic Intergenic -16431 ENSMUSG00000105538.1 ENSMUSG00000105538 ENSMUST00000197899 Gm2142 processed_pseudogene Interval_5547 chr1 89735307 89736076 + 0 NA intron (ENSMUSG00000055013.16, intron 10 of 16) protein_coding-intron (ENSMUSG00000055013.16, intron 10 of 17) 50889 ENSMUSG00000088775.1 ENSMUSG00000088775 ENSMUST00000158150 Gm26037 misc_RNA Interval_165183 chr9 45076242 45076636 + 0 NA exon (ENSMUSG00000070305.10, exon 6 of 6) protein_coding-exon (ENSMUSG00000070305.10, exon 6 of 6) 17190 ENSMUSG00000070305.10 ENSMUSG00000070305 ENSMUST00000186268 Mpzl3 protein_coding Interval_130154 chr5 124565943 124567088 + 0 NA intron (ENSMUSG00000029389.17, intron 11 of 13) protein_coding-intron (ENSMUSG00000029389.17, intron 11 of 13) 10854 ENSMUSG00000029389.17 ENSMUSG00000029389 ENSMUST00000142451 Ddx55 protein_coding Interval_26810 chr11 60764404 60765240 + 0 NA intron (ENSMUSG00000002814.15, intron 1 of 17) protein_coding-intron (ENSMUSG00000002814.15, intron 1 of 18) 12477 ENSMUSG00000002814.15 ENSMUSG00000002814 ENSMUST00000130068 Top3a protein_coding Interval_37653 chr12 70853681 70854054 + 0 NA intron (ENSMUSG00000048285.9, intron 1 of 11) protein_coding-intron (ENSMUSG00000048285.9, intron 1 of 13) 28178 ENSMUSG00000048285.9 ENSMUSG00000048285 ENSMUST00000222045 Frmd6 protein_coding Interval_82621 chr18 75488389 75488841 + 0 NA intron (ENSMUSG00000052928.9, intron 9 of 11) protein_coding-intron (ENSMUSG00000052928.9, intron 9 of 11) -26030 ENSMUSG00000097712.1 ENSMUSG00000097712 ENSMUST00000181913 Gm10532 antisense Interval_106028 chr3 90860545 90861279 + 0 NA Intergenic Intergenic -12658 ENSMUSG00000106174.1 ENSMUSG00000106174 ENSMUST00000200121 Gm43235 unprocessed_pseudogene Interval_21584 chr10 130293446 130294520 + 0 NA Intergenic Intergenic -13743 ENSMUSG00000048015.4 ENSMUSG00000048015 ENSMUST00000061571 Neurod4 protein_coding Interval_76714 chr17 83654069 83655534 + 0 NA Intergenic Intergenic -22906 ENSMUSG00000045053.2 ENSMUSG00000045053 ENSMUST00000051482 Kcng3 protein_coding Interval_39814 chr12 98685008 98686129 + 0 NA intron (ENSMUSG00000021009.15, intron 13 of 13) protein_coding-intron (ENSMUSG00000021009.15, intron 13 of 18) -1818 ENSMUSG00000021009.15 ENSMUSG00000021009 ENSMUST00000222071 Ptpn21 protein_coding Interval_12359 chr1 192521771 192523419 + 0 NA intron (ENSMUSG00000037375.16, intron 11 of 11) protein_coding-intron (ENSMUSG00000037375.16, intron 11 of 11) 87855 ENSMUSG00000058248.12 ENSMUSG00000058248 ENSMUST00000151152 Kcnh1 protein_coding Interval_77326 chr17 88013290 88013853 + 0 NA intron (ENSMUSG00000005371.15, intron 4 of 22) protein_coding-intron (ENSMUSG00000005371.15, intron 4 of 22) 38476 ENSMUSG00000005370.4 ENSMUSG00000005370 ENSMUST00000234756 Msh6 protein_coding Interval_98708 chr2 154447700 154448969 + 0 NA intron (ENSMUSG00000038533.15, intron 1 of 2) protein_coding-intron (ENSMUSG00000038533.15, intron 1 of 10) 11492 ENSMUSG00000038533.15 ENSMUSG00000038533 ENSMUST00000139506 Cbfa2t2 protein_coding Interval_76871 chr17 84641627 84642312 + 0 NA intron (ENSMUSG00000024253.9, intron 5 of 12) protein_coding-intron (ENSMUSG00000024253.9, intron 5 of 12) -7306 ENSMUSG00000024253.9 ENSMUSG00000024253 ENSMUST00000234861 Dync2li1 protein_coding Interval_121137 chr4 153416047 153418284 + 0 NA intron (ENSMUSG00000039546.9, intron 1 of 4) protein_coding-intron (ENSMUSG00000039546.9, intron 2 of 5) 65014 ENSMUSG00000039546.9 ENSMUSG00000039546 ENSMUST00000149177 Ajap1 protein_coding Interval_108596 chr3 129436563 129436777 + 0 NA Intergenic Intergenic 2997 ENSMUSG00000105712.1 ENSMUSG00000105712 ENSMUST00000199748 Gm5712 processed_pseudogene Interval_63295 chr15 100156695 100157034 + 0 NA intron (ENSMUSG00000023026.16, intron 7 of 37) protein_coding-intron (ENSMUSG00000023026.16, intron 2 of 32) -5863 ENSMUSG00000023026.16 ENSMUSG00000023026 ENSMUST00000135658 Dip2b protein_coding Interval_107408 chr3 107355307 107358123 + 0 NA Intergenic Intergenic 13760 ENSMUSG00000105532.1 ENSMUSG00000105532 ENSMUST00000199575 Gm5279 processed_pseudogene Interval_48592 chr13 100559306 100560038 + 0 NA exon (ENSMUSG00000114332.1, exon 1 of 1) processed_pseudogene-exon (ENSMUSG00000114332.1, exon 1 of 1) 360 ENSMUSG00000114332.1 ENSMUSG00000114332 ENSMUST00000223825 Gm8847 processed_pseudogene Interval_30760 chr11 96317887 96320404 + 0 NA exon (ENSMUSG00000038692.8, exon 1 of 2) protein_coding-exon (ENSMUSG00000038692.8, exon 1 of 2) 878 ENSMUSG00000038692.8 ENSMUSG00000038692 ENSMUST00000049241 Hoxb4 protein_coding Interval_79413 chr18 31736338 31736602 + 0 NA Intergenic Intergenic -2245 ENSMUSG00000117533.1 ENSMUSG00000117533 ENSMUST00000234849 Gm50060 processed_pseudogene Interval_128981 chr5 116437907 116439091 + 0 NA promoter-TSS (ENSMUSG00000086219.7) antisense-promoter-TSS (ENSMUSG00000086219.7) -221 ENSMUSG00000086219.7 ENSMUSG00000086219 ENSMUST00000126959 Srrm4os antisense Interval_51158 chr14 24239829 24240235 + 0 NA intron (ENSMUSG00000091079.1, intron 1 of 1) protein_coding-intron (ENSMUSG00000021782.14, intron 1 of 30) 3359 ENSMUSG00000091079.1 ENSMUSG00000091079 ENSMUST00000163715 Gm17105 sense_intronic Interval_70784 chr17 14489383 14489587 + 0 NA intron (ENSMUSG00000116801.1, intron 3 of 4) lincRNA-intron (ENSMUSG00000116801.1, intron 3 of 4) 39914 ENSMUSG00000116801.1 ENSMUSG00000116801 ENSMUST00000232609 Gm38551 lincRNA Interval_90947 chr2 33642392 33643354 + 0 NA TTS (ENSMUSG00000052951.5) antisense-TTS (ENSMUSG00000052951.5) 1680 ENSMUSG00000052951.5 ENSMUSG00000052951 ENSMUST00000147294 C130021I20Rik antisense Interval_90466 chr2 30641377 30641711 + 0 NA exon (ENSMUSG00000086405.1, exon 2 of 4) lincRNA-exon (ENSMUSG00000086405.1, exon 2 of 4) 11889 ENSMUSG00000086405.1 ENSMUSG00000086405 ENSMUST00000146702 9330198N18Rik lincRNA Interval_139996 chr6 113298269 113298474 + 0 NA intron (ENSMUSG00000030270.11, intron 3 of 4) protein_coding-intron (ENSMUSG00000030270.11, intron 17 of 20) 8303 ENSMUSG00000107812.1 ENSMUSG00000107812 ENSMUST00000203569 Gm43935 TEC Interval_13463 chr10 18436015 18437622 + 0 NA intron (ENSMUSG00000039835.16, intron 1 of 3) protein_coding-intron (ENSMUSG00000039835.16, intron 1 of 6) -99577 ENSMUSG00000111313.1 ENSMUSG00000111313 ENSMUST00000213578 Gm18942 processed_pseudogene Interval_174436 chrX 152276516 152277535 + 0 NA Intergenic Intergenic 7219 ENSMUSG00000025332.14 ENSMUSG00000025332 ENSMUST00000155793 Kdm5c protein_coding Interval_31360 chr11 100256114 100256420 + 0 NA TTS (ENSMUSG00000035557.9) protein_coding-TTS (ENSMUSG00000035557.9) 4762 ENSMUSG00000035557.9 ENSMUSG00000035557 ENSMUST00000080893 Krt17 protein_coding Interval_5694 chr1 90973031 90973689 + 0 NA Intergenic Intergenic 1900 ENSMUSG00000100791.1 ENSMUSG00000100791 ENSMUST00000187127 Gm28199 lincRNA Interval_78220 chr18 10287400 10287614 + 0 NA Intergenic Intergenic 20313 ENSMUSG00000117363.1 ENSMUSG00000117363 ENSMUST00000234780 Gm50033 TEC Interval_154592 chr8 21873034 21873462 + 0 NA Intergenic Intergenic 12173 ENSMUSG00000047390.6 ENSMUSG00000047390 ENSMUST00000057076 Defb9 protein_coding Interval_87064 chr19 45895325 45895999 + 0 NA intron (ENSMUSG00000039901.10, intron 20 of 25) protein_coding-intron (ENSMUSG00000039901.10, intron 20 of 25) -17536 ENSMUSG00000117972.1 ENSMUSG00000117972 ENSMUST00000236365 Gm6813 processed_pseudogene Interval_54699 chr14 73447514 73448124 + 0 NA Intergenic Intergenic -45274 ENSMUSG00000115530.1 ENSMUSG00000115530 ENSMUST00000226353 Gm4266 processed_pseudogene Interval_125252 chr5 65678313 65679326 + 0 NA intron (ENSMUSG00000029202.12, intron 2 of 32) protein_coding-intron (ENSMUSG00000029202.12, intron 2 of 31) 3525 ENSMUSG00000107050.1 ENSMUSG00000107050 ENSMUST00000202959 C030017G13Rik TEC Interval_59615 chr15 56159570 56159779 + 0 NA Intergenic Intergenic 12715 ENSMUSG00000114969.1 ENSMUSG00000114969 ENSMUST00000227090 Hba-ps3 processed_pseudogene Interval_94631 chr2 92840135 92840490 + 0 NA Intergenic Intergenic 32997 ENSMUSG00000082700.1 ENSMUSG00000082700 ENSMUST00000121350 Gm13792 processed_pseudogene Interval_153911 chr8 10964226 10964961 + 0 NA exon (ENSMUSG00000109508.1, exon 2 of 2) lincRNA-exon (ENSMUSG00000109508.1, exon 2 of 2) 6221 ENSMUSG00000109508.1 ENSMUSG00000109508 ENSMUST00000208277 Gm44956 lincRNA Interval_77220 chr17 87436718 87437073 + 0 NA intron (ENSMUSG00000036438.14, intron 1 of 4) protein_coding-intron (ENSMUSG00000036438.14, intron 2 of 5) -9260 ENSMUSG00000036557.8 ENSMUSG00000036557 ENSMUST00000189487 Stpg4 protein_coding Interval_13459 chr10 18418007 18418911 + 0 NA intron (ENSMUSG00000039835.16, intron 1 of 3) protein_coding-intron (ENSMUSG00000039835.16, intron 1 of 6) -81218 ENSMUSG00000111313.1 ENSMUSG00000111313 ENSMUST00000213578 Gm18942 processed_pseudogene Interval_35777 chr12 29279663 29280258 + 0 NA Intergenic Intergenic 37608 ENSMUSG00000112776.1 ENSMUSG00000112776 ENSMUST00000218409 Gm6989 processed_pseudogene Interval_47661 chr13 90922772 90923666 + 0 NA promoter-TSS (ENSMUSG00000049517.8) protein_coding-promoter-TSS (ENSMUSG00000049517.8) 2 ENSMUSG00000049517.8 ENSMUSG00000049517 ENSMUST00000224430 Rps23 protein_coding Interval_29211 chr11 81579817 81580442 + 0 NA intron (ENSMUSG00000020704.13, intron 1 of 9) protein_coding-intron (ENSMUSG00000020704.13, intron 1 of 9) -6656 ENSMUSG00000080980.1 ENSMUSG00000080980 ENSMUST00000117522 1700071K01Rik processed_pseudogene Interval_135432 chr6 39343966 39344330 + 0 NA exon (ENSMUSG00000029924.12, exon 4 of 4) protein_coding-exon (ENSMUSG00000029924.12, exon 4 of 4) 33509 ENSMUSG00000029924.12 ENSMUSG00000029924 ENSMUST00000202785 Slc37a3 protein_coding Interval_101280 chr2 180157745 180157915 + 0 NA exon (ENSMUSG00000039050.8, exon 12 of 14) protein_coding-exon (ENSMUSG00000039050.8, exon 12 of 14) -13765 ENSMUSG00000039041.15 ENSMUSG00000039041 ENSMUST00000152850 Adrm1 protein_coding Interval_96815 chr2 128548401 128548609 + 0 NA Intergenic Intergenic 9729 ENSMUSG00000082671.2 ENSMUSG00000082671 ENSMUST00000122132 Gm14006 processed_pseudogene Interval_173949 chrX 114974672 114975935 + 0 NA Intergenic Intergenic 6014 ENSMUSG00000082260.3 ENSMUSG00000082260 ENSMUST00000118664 Gm7429 processed_pseudogene Interval_136328 chr6 53124960 53125374 + 0 NA Intergenic Intergenic 46568 ENSMUSG00000108028.1 ENSMUSG00000108028 ENSMUST00000203654 Gm8143 processed_pseudogene Interval_34718 chr12 8907322 8907939 + 0 NA Intergenic Intergenic -5294 ENSMUSG00000112891.1 ENSMUSG00000112891 ENSMUST00000219499 Gm47391 lincRNA Interval_27100 chr11 62901557 62902676 + 0 NA intron (ENSMUSG00000014177.10, intron 2 of 2) protein_coding-intron (ENSMUSG00000014177.10, intron 2 of 2) 19476 ENSMUSG00000086677.1 ENSMUSG00000086677 ENSMUST00000148598 Tvp23bos antisense Interval_51113 chr14 23529477 23530197 + 0 NA intron (ENSMUSG00000063142.15, intron 7 of 16) protein_coding-intron (ENSMUSG00000063142.15, intron 6 of 28) 10175 ENSMUSG00000114751.1 ENSMUSG00000114751 ENSMUST00000224401 5430425E15Rik TEC Interval_68079 chr16 64875525 64876335 + 0 NA Intergenic Intergenic 23228 ENSMUSG00000054604.7 ENSMUSG00000054604 ENSMUST00000136532 Cggbp1 protein_coding Interval_53158 chr14 54786051 54786336 + 0 NA Intergenic Intergenic -4247 ENSMUSG00000022180.7 ENSMUSG00000022180 ENSMUST00000226646 Slc7a8 protein_coding Interval_167072 chr9 65050899 65051412 + 0 NA intron (ENSMUSG00000032393.15, intron 5 of 18) protein_coding-intron (ENSMUSG00000032393.15, intron 6 of 20) 18377 ENSMUSG00000032393.15 ENSMUSG00000032393 ENSMUST00000214678 Dpp8 protein_coding Interval_63245 chr15 99909200 99909815 + 0 NA Intergenic Intergenic 6393 ENSMUSG00000116255.1 ENSMUSG00000116255 ENSMUST00000230306 Gm20564 processed_pseudogene Interval_167398 chr9 68686517 68687070 + 0 NA intron (ENSMUSG00000032238.17, intron 1 of 5) protein_coding-intron (ENSMUSG00000032238.17, intron 1 of 10) 32902 ENSMUSG00000032238.17 ENSMUSG00000032238 ENSMUST00000113624 Rora protein_coding Interval_5931 chr1 93293011 93293342 + 0 NA intron (ENSMUSG00000047793.13, intron 3 of 4) protein_coding-intron (ENSMUSG00000047793.13, intron 29 of 30) 12703 ENSMUSG00000026273.13 ENSMUSG00000026273 ENSMUST00000152307 Mterf4 protein_coding Interval_144352 chr7 24633278 24633496 + 0 NA intron (ENSMUSG00000097215.1, intron 4 of 4) antisense-intron (ENSMUSG00000097215.1, intron 4 of 4) -3163 ENSMUSG00000057454.5 ENSMUSG00000057454 ENSMUST00000080718 Lypd3 protein_coding Interval_79640 chr18 34182231 34183926 + 0 NA Intergenic Intergenic 5861 ENSMUSG00000096804.1 ENSMUSG00000096804 ENSMUST00000157988 Gm23411 snRNA Interval_119343 chr4 136999689 136999907 + 0 NA intron (ENSMUSG00000060862.10, intron 7 of 18) protein_coding-intron (ENSMUSG00000060862.10, intron 7 of 18) -8136 ENSMUSG00000060862.10 ENSMUSG00000060862 ENSMUST00000145505 Zbtb40 protein_coding Interval_8564 chr1 142714275 142714568 + 0 NA Intergenic Intergenic -8435 ENSMUSG00000103890.1 ENSMUSG00000103890 ENSMUST00000194218 Gm28724 processed_pseudogene Interval_83087 chr18 81176334 81177210 + 0 NA Intergenic Intergenic 59294 ENSMUSG00000097181.1 ENSMUSG00000097181 ENSMUST00000181204 4930594M17Rik lincRNA Interval_119516 chr4 138045582 138046110 + 0 NA intron (ENSMUSG00000028760.16, intron 3 of 34) protein_coding-intron (ENSMUSG00000028760.16, intron 3 of 9) 52333 ENSMUSG00000028760.16 ENSMUSG00000028760 ENSMUST00000148074 Eif4g3 protein_coding Interval_55098 chr14 78041805 78042426 + 0 NA intron (ENSMUSG00000115517.1, intron 2 of 2) lincRNA-intron (ENSMUSG00000115517.1, intron 2 of 2) 22387 ENSMUSG00000115517.1 ENSMUSG00000115517 ENSMUST00000226503 Gm48954 lincRNA Interval_83541 chr18 89023519 89024231 + 0 NA TTS (ENSMUSG00000023066.10) protein_coding-TTS (ENSMUSG00000023066.10) 51845 ENSMUSG00000098676.1 ENSMUSG00000098676 ENSMUST00000183668 Mir6359 miRNA Interval_140819 chr6 121607622 121608377 + 0 NA Intergenic Intergenic -17713 ENSMUSG00000107438.1 ENSMUSG00000107438 ENSMUST00000203595 Gm43945 processed_pseudogene Interval_109070 chr3 135561858 135564773 + 0 NA TTS (ENSMUSG00000028164.15) protein_coding-TTS (ENSMUSG00000028164.15) 124 ENSMUSG00000028164.15 ENSMUSG00000028164 ENSMUST00000153412 Manba protein_coding Interval_67604 chr16 52163744 52164677 + 0 NA intron (ENSMUSG00000022637.11, intron 10 of 18) protein_coding-intron (ENSMUSG00000022637.11, intron 10 of 17) 11684 ENSMUSG00000022637.11 ENSMUSG00000022637 ENSMUST00000228247 Cblb protein_coding Interval_59802 chr15 59388386 59389491 + 0 NA intron (ENSMUSG00000059586.10, intron 2 of 7) protein_coding-intron (ENSMUSG00000059586.10, intron 2 of 6) 14653 ENSMUSG00000059586.10 ENSMUSG00000059586 ENSMUST00000079703 Nsmce2 protein_coding Interval_66481 chr16 34152795 34153813 + 0 NA TTS (ENSMUSG00000061751.16) protein_coding-TTS (ENSMUSG00000061751.16) -57276 ENSMUSG00000061751.16 ENSMUSG00000061751 ENSMUST00000132569 Kalrn protein_coding Interval_60979 chr15 78449868 78450840 + 0 NA intron (ENSMUSG00000016942.6, intron 10 of 17) protein_coding-intron (ENSMUSG00000016942.6, intron 10 of 17) -5975 ENSMUSG00000016942.6 ENSMUSG00000016942 ENSMUST00000229124 Tmprss6 protein_coding Interval_128657 chr5 114560211 114561354 + 0 NA Intergenic Intergenic -7235 ENSMUSG00000041930.7 ENSMUSG00000041930 ENSMUST00000130983 Fam222a protein_coding Interval_107317 chr3 105754772 105755422 + 0 NA intron (ENSMUSG00000068798.10, intron 1 of 5) protein_coding-intron (ENSMUSG00000068798.10, intron 1 of 7) -4769 ENSMUSG00000068798.10 ENSMUSG00000068798 ENSMUST00000198004 Rap1a protein_coding Interval_95254 chr2 105238630 105239452 + 0 NA intron (ENSMUSG00000055312.2, intron 1 of 2) protein_coding-intron (ENSMUSG00000055312.2, intron 1 of 3) 14699 ENSMUSG00000055312.2 ENSMUSG00000055312 ENSMUST00000131060 Them7 protein_coding Interval_125328 chr5 66220662 66221010 + 0 NA Intergenic Intergenic 6089 ENSMUSG00000107125.1 ENSMUSG00000107125 ENSMUST00000201941 Gm3822 TEC Interval_129446 chr5 120210563 120211577 + 0 NA Intergenic Intergenic 35345 ENSMUSG00000029594.12 ENSMUSG00000029594 ENSMUST00000202788 Rbm19 protein_coding Interval_158627 chr8 84846389 84847636 + 0 NA promoter-TSS (ENSMUSG00000003814.8) protein_coding-promoter-TSS (ENSMUSG00000003814.8) -176 ENSMUSG00000087685.1 ENSMUSG00000087685 ENSMUST00000141347 1700122E12Rik processed_transcript Interval_48650 chr13 100846902 100847623 + 0 NA promoter-TSS (ENSMUSG00000100596.1) lincRNA-promoter-TSS (ENSMUSG00000100596.1) -171 ENSMUSG00000100596.1 ENSMUSG00000100596 ENSMUST00000185979 Gm29502 lincRNA Interval_169840 chr9 102403302 102404151 + 0 NA Intergenic Intergenic 30608 ENSMUSG00000088138.1 ENSMUSG00000088138 ENSMUST00000157513 Gm22894 snRNA Interval_170798 chr9 110849435 110849817 + 0 NA promoter-TSS (ENSMUSG00000049719.14) protein_coding-promoter-TSS (ENSMUSG00000049719.14) 5120 ENSMUSG00000049719.14 ENSMUSG00000049719 ENSMUST00000119427 Prss46 protein_coding Interval_148750 chr7 85158130 85158317 + 0 NA Intergenic Intergenic -2225 ENSMUSG00000095664.2 ENSMUSG00000095664 ENSMUST00000233656 Vmn2r67 protein_coding Interval_126755 chr5 92602520 92603594 + 0 NA promoter-TSS (ENSMUSG00000047963.7) protein_coding-promoter-TSS (ENSMUSG00000047963.7) -11 ENSMUSG00000047963.7 ENSMUSG00000047963 ENSMUST00000202332 Stbd1 protein_coding Interval_10532 chr1 171538051 171538245 + 0 NA Intergenic Intergenic -3544 ENSMUSG00000103980.1 ENSMUSG00000103980 ENSMUST00000195218 Gm37450 processed_pseudogene Interval_114859 chr4 86447253 86447460 + 0 NA intron (ENSMUSG00000028492.13, intron 3 of 3) protein_coding-intron (ENSMUSG00000028492.13, intron 3 of 3) -5015 ENSMUSG00000083272.1 ENSMUSG00000083272 ENSMUST00000118478 Gm12550 processed_pseudogene Interval_99822 chr2 165138446 165138943 + 0 NA intron (ENSMUSG00000053166.14, intron 6 of 10) protein_coding-intron (ENSMUSG00000053166.14, intron 7 of 11) -20718 ENSMUSG00000086630.1 ENSMUSG00000086630 ENSMUST00000124728 Gm14397 antisense Interval_67237 chr16 44668009 44668203 + 0 NA Intergenic Intergenic -56251 ENSMUSG00000036208.13 ENSMUSG00000036208 ENSMUST00000132610 Nepro protein_coding Interval_79603 chr18 33961944 33962466 + 0 NA intron (ENSMUSG00000024376.7, intron 2 of 2) protein_coding-intron (ENSMUSG00000024376.7, intron 2 of 23) 44761 ENSMUSG00000024376.7 ENSMUSG00000024376 ENSMUST00000237971 Epb41l4a protein_coding Interval_148785 chr7 87411366 87411842 + 0 NA Intergenic Intergenic 81788 ENSMUSG00000004651.6 ENSMUSG00000004651 ENSMUST00000207834 Tyr protein_coding Interval_115342 chr4 97564659 97565007 + 0 NA Intergenic Intergenic -7763 ENSMUSG00000082683.1 ENSMUSG00000082683 ENSMUST00000118008 Gm12697 processed_pseudogene Interval_146478 chr7 46235798 46236939 + 0 NA intron (ENSMUSG00000030838.20, intron 1 of 19) protein_coding-intron (ENSMUSG00000030838.20, intron 1 of 26) -4635 ENSMUSG00000009487.10 ENSMUSG00000009487 ENSMUST00000209802 Otog protein_coding Interval_15085 chr10 42474759 42475223 + 0 NA intron (ENSMUSG00000038302.14, intron 1 of 13) protein_coding-intron (ENSMUSG00000038302.14, intron 1 of 12) 3289 ENSMUSG00000038302.14 ENSMUSG00000038302 ENSMUST00000149832 Afg1l protein_coding Interval_61630 chr15 83042328 83042901 + 0 NA Intergenic Intergenic -19531 ENSMUSG00000058099.16 ENSMUSG00000058099 ENSMUST00000231204 Nfam1 protein_coding Interval_152138 chr7 129987455 129988203 + 0 NA Intergenic Intergenic 25664 ENSMUSG00000108504.1 ENSMUSG00000108504 ENSMUST00000206701 Gm4265 lincRNA Interval_16085 chr10 60626131 60626338 + 0 NA intron (ENSMUSG00000012819.15, intron 4 of 7) protein_coding-intron (ENSMUSG00000012819.15, intron 2 of 66) 126549 ENSMUSG00000020100.15 ENSMUSG00000020100 ENSMUST00000144989 Slc29a3 protein_coding Interval_172887 chrX 52792419 52793235 + 0 NA intron (ENSMUSG00000073207.1, intron 1 of 1) protein_coding-intron (ENSMUSG00000073207.1, intron 1 of 1) 1627 ENSMUSG00000073207.1 ENSMUSG00000073207 ENSMUST00000101588 Ccdc160 protein_coding Interval_21013 chr10 123255795 123256730 + 0 NA Intergenic Intergenic -7814 ENSMUSG00000044071.9 ENSMUSG00000044071 ENSMUST00000219723 Tafa2 protein_coding Interval_52494 chr14 46989432 46990496 + 0 NA intron (ENSMUSG00000021838.17, intron 3 of 12) protein_coding-intron (ENSMUSG00000021838.17, intron 2 of 12) 28524 ENSMUSG00000089870.1 ENSMUSG00000089870 ENSMUST00000161397 Gm15562 sense_intronic Interval_73245 chr17 35743956 35744318 + 0 NA intron (ENSMUSG00000092600.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000092600.1, intron 1 of 1) -4331 ENSMUSG00000092219.1 ENSMUSG00000092219 ENSMUST00000173840 Gm20443 lincRNA Interval_108407 chr3 126744558 126745398 + 0 NA intron (ENSMUSG00000053819.16, intron 4 of 20) protein_coding-intron (ENSMUSG00000053819.16, intron 4 of 18) -1155 ENSMUSG00000105553.1 ENSMUSG00000105553 ENSMUST00000196636 Gm42514 TEC Interval_164828 chr9 42303233 42303446 + 0 NA Intergenic Intergenic 14342 ENSMUSG00000096114.1 ENSMUSG00000096114 ENSMUST00000179241 Gm26272 snoRNA Interval_90518 chr2 30912513 30913194 + 0 NA intron (ENSMUSG00000050737.13, intron 1 of 2) protein_coding-intron (ENSMUSG00000050737.13, intron 1 of 2) 11504 ENSMUSG00000084143.1 ENSMUSG00000084143 ENSMUST00000117436 Gm13400 processed_pseudogene Interval_107788 chr3 114985573 114986554 + 0 NA intron (ENSMUSG00000027965.15, intron 1 of 4) protein_coding-intron (ENSMUSG00000027965.15, intron 1 of 5) 81428 ENSMUSG00000027965.15 ENSMUSG00000027965 ENSMUST00000051309 Olfm3 protein_coding Interval_90681 chr2 31858730 31860081 + 0 NA Intergenic Intergenic -13400 ENSMUSG00000026841.7 ENSMUSG00000026841 ENSMUST00000028188 Fibcd1 protein_coding Interval_146136 chr7 44276163 44277489 + 0 NA Intergenic Intergenic 5572 ENSMUSG00000108343.1 ENSMUSG00000108343 ENSMUST00000206864 Gm18307 processed_pseudogene Interval_64037 chr16 5928286 5928669 + 0 NA intron (ENSMUSG00000008658.16, intron 1 of 11) protein_coding-intron (ENSMUSG00000008658.16, intron 1 of 11) -47108 ENSMUSG00000101481.1 ENSMUSG00000101481 ENSMUST00000190515 1700123O21Rik sense_intronic Interval_151024 chr7 117898750 117898950 + 0 NA Intergenic Intergenic 122056 ENSMUSG00000088116.1 ENSMUSG00000088116 ENSMUST00000157491 Gm24063 miRNA Interval_18049 chr10 81544659 81545719 + 0 NA promoter-TSS (ENSMUSG00000034781.5) protein_coding-promoter-TSS (ENSMUSG00000034781.5) -13174 ENSMUSG00000034781.5 ENSMUSG00000034781 ENSMUST00000134354 Gna11 protein_coding Interval_89344 chr2 19568920 19569269 + 0 NA Intergenic Intergenic -15180 ENSMUSG00000026734.9 ENSMUSG00000026734 ENSMUST00000131199 4921504E06Rik protein_coding Interval_115959 chr4 106606782 106607605 + 0 NA intron (ENSMUSG00000054362.9, intron 9 of 10) protein_coding-intron (ENSMUSG00000054362.9, intron 9 of 10) 10045 ENSMUSG00000054362.9 ENSMUSG00000054362 ENSMUST00000106788 Lexm protein_coding Interval_57641 chr15 13104685 13105559 + 0 NA intron (ENSMUSG00000039385.5, intron 1 of 3) protein_coding-intron (ENSMUSG00000039385.5, intron 1 of 11) 68553 ENSMUSG00000039385.5 ENSMUSG00000039385 ENSMUST00000226917 Cdh6 protein_coding Interval_11113 chr1 179462314 179462930 + 0 NA intron (ENSMUSG00000055067.15, intron 1 of 11) protein_coding-intron (ENSMUSG00000055067.15, intron 1 of 5) 55383 ENSMUSG00000055067.15 ENSMUSG00000055067 ENSMUST00000194237 Smyd3 protein_coding Interval_60339 chr15 73009793 73010010 + 0 NA intron (ENSMUSG00000047921.17, intron 7 of 16) protein_coding-intron (ENSMUSG00000047921.17, intron 7 of 21) 51144 ENSMUSG00000047921.17 ENSMUSG00000047921 ENSMUST00000228960 Trappc9 protein_coding Interval_142225 chr6 139250685 139251885 + 0 NA Intergenic Intergenic -55054 ENSMUSG00000088903.1 ENSMUSG00000088903 ENSMUST00000158278 Gm25434 scaRNA Interval_73957 chr17 45666126 45666873 + 0 NA promoter-TSS (ENSMUSG00000036026.15) protein_coding-promoter-TSS (ENSMUSG00000036026.15) 2980 ENSMUSG00000086472.1 ENSMUSG00000086472 ENSMUST00000156224 Gm16172 antisense Interval_8486 chr1 140005004 140005201 + 0 NA Intergenic Intergenic 1277 ENSMUSG00000087930.1 ENSMUSG00000087930 ENSMUST00000157305 Gm26048 snoRNA Interval_143323 chr7 5299658 5299937 + 0 NA intron (ENSMUSG00000035177.8, intron 3 of 3) protein_coding-intron (ENSMUSG00000035177.8, intron 11 of 11) -5081 ENSMUSG00000109155.1 ENSMUSG00000109155 ENSMUST00000207938 Gm18757 processed_pseudogene Interval_6187 chr1 100556685 100557052 + 0 NA Intergenic Intergenic -40207 ENSMUSG00000099427.1 ENSMUSG00000099427 ENSMUST00000185791 Gm18700 processed_pseudogene Interval_68435 chr16 76519551 76520582 + 0 NA Intergenic Intergenic -17157 ENSMUSG00000109338.2 ENSMUSG00000109338 ENSMUST00000207575 Gm45030 lincRNA Interval_117161 chr4 120148219 120149455 + 0 NA Intergenic Intergenic -12369 ENSMUSG00000028635.7 ENSMUSG00000028635 ENSMUST00000030384 Edn2 protein_coding Interval_113835 chr4 59223010 59223632 + 0 NA TTS (ENSMUSG00000028381.8) protein_coding-TTS (ENSMUSG00000028381.8) 10665 ENSMUSG00000028381.8 ENSMUSG00000028381 ENSMUST00000155153 Ugcg protein_coding Interval_110303 chr3 156334966 156335203 + 0 NA Intergenic Intergenic 70498 ENSMUSG00000104573.1 ENSMUSG00000104573 ENSMUST00000199214 Gm42886 processed_pseudogene Interval_41621 chr12 117057290 117057944 + 0 NA intron (ENSMUSG00000056553.14, intron 13 of 13) protein_coding-intron (ENSMUSG00000056553.14, intron 12 of 22) 93598 ENSMUSG00000099907.1 ENSMUSG00000099907 ENSMUST00000186114 Gm10421 processed_transcript Interval_65099 chr16 19096955 19097172 + 0 NA intron (ENSMUSG00000106567.1, intron 2 of 3) antisense-intron (ENSMUSG00000106567.1, intron 2 of 3) -11563 ENSMUSG00000076934.2 ENSMUSG00000076934 ENSMUST00000103746 Iglv1 IG_V_gene Interval_98626 chr2 153639254 153640126 + 0 NA Intergenic Intergenic -6959 ENSMUSG00000056941.17 ENSMUSG00000056941 ENSMUST00000109782 Commd7 protein_coding Interval_92690 chr2 62656586 62656843 + 0 NA Intergenic Intergenic -10459 ENSMUSG00000026896.14 ENSMUSG00000026896 ENSMUST00000175964 Ifih1 protein_coding Interval_95546 chr2 112128539 112128969 + 0 NA exon (ENSMUSG00000109801.2, exon 3 of 3) protein_coding-exon (ENSMUSG00000109801.2, exon 3 of 3) 6223 ENSMUSG00000109801.2 ENSMUSG00000109801 ENSMUST00000099596 Olfr1316 protein_coding Interval_155032 chr8 25831864 25833156 + 0 NA exon (ENSMUSG00000031575.18, exon 1 of 1) protein_coding-exon (ENSMUSG00000031575.18, exon 1 of 1) 1035 ENSMUSG00000031575.18 ENSMUSG00000031575 ENSMUST00000211188 Ash2l protein_coding Interval_146282 chr7 45110151 45112701 + 0 NA Intergenic Intergenic -7671 ENSMUSG00000003420.8 ENSMUSG00000003420 ENSMUST00000211535 Fcgrt protein_coding Interval_34980 chr12 16260776 16261567 + 0 NA intron (ENSMUSG00000113586.1, intron 4 of 5) lincRNA-intron (ENSMUSG00000113586.1, intron 4 of 5) -28944 ENSMUSG00000113892.1 ENSMUSG00000113892 ENSMUST00000220475 Gm48605 lincRNA Interval_93811 chr2 77133947 77134599 + 0 NA intron (ENSMUSG00000044033.16, intron 2 of 23) protein_coding-intron (ENSMUSG00000044033.16, intron 2 of 11) -59921 ENSMUSG00000105724.1 ENSMUSG00000105724 ENSMUST00000200081 Gm44360 miRNA Interval_116342 chr4 109983605 109984258 + 0 NA TTS (ENSMUSG00000047143.3) protein_coding-TTS (ENSMUSG00000047143.3) 5878 ENSMUSG00000047143.3 ENSMUSG00000047143 ENSMUST00000061187 Dmrta2 protein_coding Interval_27106 chr11 62932883 62933621 + 0 NA Intergenic Intergenic -11660 ENSMUSG00000086677.1 ENSMUSG00000086677 ENSMUST00000148598 Tvp23bos antisense Interval_9986 chr1 164575456 164575730 + 0 NA exon (ENSMUSG00000102389.1, exon 1 of 1) TEC-exon (ENSMUSG00000102389.1, exon 1 of 1) 138 ENSMUSG00000102389.1 ENSMUSG00000102389 ENSMUST00000191913 D630023O14Rik TEC Interval_94405 chr2 90795208 90795676 + 0 NA intron (ENSMUSG00000040812.14, intron 7 of 17) protein_coding-intron (ENSMUSG00000040812.14, intron 7 of 17) 9134 ENSMUSG00000080977.1 ENSMUSG00000080977 ENSMUST00000118431 Gm13772 processed_pseudogene Interval_32181 chr11 105967502 105968655 + 0 NA exon (ENSMUSG00000020681.14, exon 1 of 25) protein_coding-exon (ENSMUSG00000020681.14, exon 1 of 25) -8527 ENSMUSG00000020681.14 ENSMUSG00000020681 ENSMUST00000151657 Ace protein_coding Interval_142939 chr6 147106746 147107871 + 0 NA promoter-TSS (ENSMUSG00000040102.10) protein_coding-promoter-TSS (ENSMUSG00000040102.10) 1994 ENSMUSG00000040102.10 ENSMUSG00000040102 ENSMUST00000203441 Klhl42 protein_coding Interval_651 chr1 9565153 9565414 + 0 NA intron (ENSMUSG00000025911.14, intron 12 of 14) protein_coding-intron (ENSMUSG00000025911.14, intron 11 of 12) -9265 ENSMUSG00000081441.3 ENSMUSG00000081441 ENSMUST00000121942 Gm6161 processed_pseudogene Interval_19344 chr10 97339694 97340029 + 0 NA Intergenic Intergenic -83617 ENSMUSG00000105557.1 ENSMUSG00000105557 ENSMUST00000198473 Mir3966 miRNA Interval_69858 chr16 97632833 97633266 + 0 NA Intergenic Intergenic -65712 ENSMUSG00000000385.8 ENSMUSG00000000385 ENSMUST00000232141 Tmprss2 protein_coding Interval_84691 chr19 15338600 15338846 + 0 NA Intergenic Intergenic -341281 ENSMUSG00000094850.1 ENSMUSG00000094850 ENSMUST00000083389 Gm24319 snRNA Interval_97496 chr2 137797902 137798293 + 0 NA intron (ENSMUSG00000085640.1, intron 4 of 4) lincRNA-intron (ENSMUSG00000085640.1, intron 4 of 4) 78734 ENSMUSG00000086214.1 ENSMUSG00000086214 ENSMUST00000134795 Gm14062 lincRNA Interval_20952 chr10 122709805 122710363 + 0 NA intron (ENSMUSG00000034613.12, intron 1 of 5) protein_coding-intron (ENSMUSG00000034613.12, intron 1 of 9) 30769 ENSMUSG00000099225.1 ENSMUSG00000099225 ENSMUST00000185165 Mir8104 miRNA Interval_162327 chr8 127131387 127131592 + 0 NA intron (ENSMUSG00000025812.18, intron 1 of 17) protein_coding-intron (ENSMUSG00000025812.18, intron 1 of 23) -39915 ENSMUSG00000025812.18 ENSMUSG00000025812 ENSMUST00000159940 Pard3 protein_coding Interval_89942 chr2 26620317 26621440 + 0 NA intron (ENSMUSG00000092356.2, intron 3 of 6) protein_coding-intron (ENSMUSG00000092356.2, intron 3 of 6) -7616 ENSMUSG00000036186.5 ENSMUSG00000036186 ENSMUST00000144449 Dipk1b protein_coding Interval_1129 chr1 15883310 15883936 + 0 NA intron (ENSMUSG00000032719.4, intron 2 of 4) protein_coding-intron (ENSMUSG00000032719.4, intron 2 of 4) 4093 ENSMUSG00000088943.1 ENSMUSG00000088943 ENSMUST00000158318 Gm23259 misc_RNA Interval_54201 chr14 66199512 66200475 + 0 NA intron (ENSMUSG00000059456.13, intron 1 of 29) protein_coding-intron (ENSMUSG00000059456.13, intron 2 of 30) 13559 ENSMUSG00000059456.13 ENSMUSG00000059456 ENSMUST00000127083 Ptk2b protein_coding Interval_45653 chr13 56581550 56582954 + 0 NA Intergenic Intergenic -13285 ENSMUSG00000114604.1 ENSMUSG00000114604 ENSMUST00000224345 2010203P06Rik lincRNA Interval_151649 chr7 125688920 125689214 + 0 NA intron (ENSMUSG00000032777.9, intron 5 of 19) protein_coding-intron (ENSMUSG00000032777.9, intron 6 of 36) -18850 ENSMUSG00000032743.15 ENSMUSG00000032743 ENSMUST00000155059 D430042O09Rik protein_coding Interval_11777 chr1 185349981 185350647 + 0 NA intron (ENSMUSG00000026617.16, intron 7 of 9) protein_coding-intron (ENSMUSG00000026617.16, intron 6 of 8) 12551 ENSMUSG00000097261.2 ENSMUSG00000097261 ENSMUST00000195314 4930532G15Rik lincRNA Interval_86157 chr19 37155584 37155841 + 0 NA intron (ENSMUSG00000039652.16, intron 2 of 10) protein_coding-intron (ENSMUSG00000039652.16, intron 2 of 10) -6550 ENSMUSG00000080544.1 ENSMUSG00000080544 ENSMUST00000116894 Gm22714 ribozyme Interval_30913 chr11 97196640 97197712 + 0 NA Intergenic Intergenic -31776 ENSMUSG00000001440.5 ENSMUSG00000001440 ENSMUST00000153727 Kpnb1 protein_coding Interval_107864 chr3 116390461 116390670 + 0 NA intron (ENSMUSG00000033502.15, intron 4 of 14) protein_coding-intron (ENSMUSG00000033502.15, intron 4 of 15) 38180 ENSMUSG00000033502.15 ENSMUSG00000033502 ENSMUST00000136994 Cdc14a protein_coding Interval_70486 chr17 10626347 10627316 + 0 NA intron (ENSMUSG00000037196.6, intron 2 of 4) protein_coding-intron (ENSMUSG00000037196.6, intron 2 of 4) 4236 ENSMUSG00000037196.6 ENSMUSG00000037196 ENSMUST00000160599 Pacrg protein_coding Interval_129213 chr5 118236469 118237736 + 0 NA TTS (ENSMUSG00000032850.16) protein_coding-TTS (ENSMUSG00000032850.16) 7892 ENSMUSG00000032850.16 ENSMUSG00000032850 ENSMUST00000133372 Rnft2 protein_coding Interval_77803 chr18 3774691 3775587 + 0 NA Intergenic Intergenic -4335 ENSMUSG00000088480.1 ENSMUSG00000088480 ENSMUST00000157855 Gm23643 snRNA Interval_165104 chr9 44593228 44594128 + 0 NA Intergenic Intergenic 4340 ENSMUSG00000110721.1 ENSMUSG00000110721 ENSMUST00000217329 Gm47231 lincRNA Interval_163179 chr9 17184138 17185432 + 0 NA Intergenic Intergenic 154740 ENSMUSG00000090602.3 ENSMUSG00000090602 ENSMUST00000164523 Gm5611 processed_pseudogene Interval_122593 chr5 24075553 24075784 + 0 NA Intergenic Intergenic -9576 ENSMUSG00000106118.1 ENSMUSG00000106118 ENSMUST00000197900 Gm18038 processed_pseudogene Interval_65641 chr16 24517418 24519292 + 0 NA intron (ENSMUSG00000033306.15, intron 3 of 6) protein_coding-intron (ENSMUSG00000033306.15, intron 3 of 12) -11039 ENSMUSG00000116875.1 ENSMUSG00000116875 ENSMUST00000231737 Morf4l1-ps1 processed_pseudogene Interval_104269 chr3 62455436 62455667 + 0 NA intron (ENSMUSG00000036885.14, intron 6 of 7) protein_coding-intron (ENSMUSG00000036885.14, intron 11 of 13) 28371 ENSMUSG00000036885.14 ENSMUSG00000036885 ENSMUST00000192138 Arhgef26 protein_coding Interval_73669 chr17 42612888 42613675 + 0 NA Intergenic Intergenic -1886 ENSMUSG00000043972.8 ENSMUSG00000043972 ENSMUST00000068355 Opn5 protein_coding Interval_19608 chr10 105573523 105575534 + 0 NA promoter-TSS (ENSMUSG00000036019.8) protein_coding-promoter-TSS (ENSMUSG00000036019.8) 575 ENSMUSG00000085282.8 ENSMUSG00000085282 ENSMUST00000145794 Gm15663 processed_transcript Interval_100089 chr2 167008575 167009077 + 0 NA exon (ENSMUSG00000082665.1, exon 1 of 2) processed_pseudogene-exon (ENSMUSG00000082665.1, exon 1 of 2) 213 ENSMUSG00000082665.1 ENSMUSG00000082665 ENSMUST00000118868 Gm11470 processed_pseudogene Interval_21596 chr10 130418890 130420658 + 0 NA intron (ENSMUSG00000092048.3, intron 5 of 5) protein_coding-intron (ENSMUSG00000092048.3, intron 5 of 5) 7275 ENSMUSG00000040540.6 ENSMUSG00000040540 ENSMUST00000075147 Ctdsp2-ps processed_pseudogene Interval_84519 chr19 12069271 12070223 + 0 NA Intergenic Intergenic -7065 ENSMUSG00000067528.3 ENSMUSG00000067528 ENSMUST00000087830 Olfr1424 protein_coding Interval_68587 chr16 79794413 79794711 + 0 NA Intergenic Intergenic 120309 ENSMUSG00000097552.2 ENSMUSG00000097552 ENSMUST00000181937 Rps19-ps12 processed_pseudogene Interval_159250 chr8 92302849 92304315 + 0 NA Intergenic Intergenic 35668 ENSMUSG00000095651.1 ENSMUSG00000095651 ENSMUST00000178584 Gm21817 lincRNA Interval_69707 chr16 95701563 95703314 + 0 NA promoter-TSS (ENSMUSG00000022895.16) protein_coding-promoter-TSS (ENSMUSG00000022895.16) -17 ENSMUSG00000022895.16 ENSMUSG00000022895 ENSMUST00000233578 Ets2 protein_coding Interval_170465 chr9 108157923 108158365 + 0 NA intron (ENSMUSG00000032589.14, intron 1 of 11) protein_coding-intron (ENSMUSG00000032589.14, intron 1 of 11) -2135 ENSMUSG00000103658.1 ENSMUSG00000103658 ENSMUST00000191845 Gm37201 processed_pseudogene Interval_29016 chr11 79922636 79922925 + 0 NA Intergenic Intergenic 16799 ENSMUSG00000082252.1 ENSMUSG00000082252 ENSMUST00000122438 Gm11204 processed_pseudogene Interval_165914 chr9 54604920 54605329 + 0 NA TTS (ENSMUSG00000032279.11) protein_coding-TTS (ENSMUSG00000032279.11) 18790 ENSMUSG00000032279.11 ENSMUSG00000032279 ENSMUST00000214136 Idh3a protein_coding Interval_102607 chr3 28269843 28270835 + 0 NA intron (ENSMUSG00000027692.16, intron 1 of 30) protein_coding-intron (ENSMUSG00000027692.16, intron 1 of 30) 6757 ENSMUSG00000027692.16 ENSMUSG00000027692 ENSMUST00000192205 Tnik protein_coding Interval_171706 chr9 120340055 120340522 + 0 NA intron (ENSMUSG00000041794.13, intron 2 of 5) protein_coding-intron (ENSMUSG00000041794.13, intron 2 of 16) 23960 ENSMUSG00000083772.1 ENSMUSG00000083772 ENSMUST00000121130 Gm15566 processed_pseudogene Interval_6414 chr1 107481240 107481760 + 0 NA Intergenic Intergenic -41323 ENSMUSG00000089278.1 ENSMUSG00000089278 ENSMUST00000158653 Gm24553 snoRNA Interval_56415 chr14 118617105 118617413 + 0 NA intron (ENSMUSG00000032849.14, intron 8 of 29) protein_coding-intron (ENSMUSG00000032849.14, intron 9 of 30) -24787 ENSMUSG00000098433.1 ENSMUSG00000098433 ENSMUST00000184391 Mir6391 miRNA Interval_130537 chr5 128637447 128637940 + 0 NA Intergenic Intergenic 36849 ENSMUSG00000081683.5 ENSMUSG00000081683 ENSMUST00000117102 Fzd10 protein_coding Interval_158787 chr8 86535883 86536845 + 0 NA intron (ENSMUSG00000036872.16, intron 14 of 15) protein_coding-intron (ENSMUSG00000036872.16, intron 13 of 28) 30226 ENSMUSG00000036872.16 ENSMUSG00000036872 ENSMUST00000152438 Abcc12 protein_coding Interval_157083 chr8 65037129 65037676 + 0 NA promoter-TSS (ENSMUSG00000079042.10) protein_coding-promoter-TSS (ENSMUSG00000079042.10) -66 ENSMUSG00000079042.10 ENSMUSG00000079042 ENSMUST00000124790 Apela protein_coding Interval_45375 chr13 54731036 54731257 + 0 NA exon (ENSMUSG00000034918.8, exon 22 of 32) protein_coding-exon (ENSMUSG00000034918.8, exon 22 of 32) 18728 ENSMUSG00000069227.4 ENSMUSG00000069227 ENSMUST00000099506 Gprin1 protein_coding Interval_79016 chr18 23969536 23969730 + 0 NA intron (ENSMUSG00000024274.10, intron 4 of 4) transcribed_unprocessed_pseudogene-intron (ENSMUSG00000024274.10, intron 2 of 2) 14928 ENSMUSG00000024276.7 ENSMUSG00000024276 ENSMUST00000223595 Zfp397 protein_coding Interval_95785 chr2 116222512 116222734 + 0 NA Intergenic Intergenic -146527 ENSMUSG00000103562.1 ENSMUSG00000103562 ENSMUST00000195368 2810405F15Rik TEC Interval_5519 chr1 89516181 89516948 + 0 NA intron (ENSMUSG00000055013.16, intron 1 of 16) protein_coding-intron (ENSMUSG00000055013.16, intron 1 of 17) 33126 ENSMUSG00000104114.1 ENSMUSG00000104114 ENSMUST00000192974 Gm37297 TEC Interval_137939 chr6 83547059 83547484 + 0 NA exon (ENSMUSG00000006906.10, exon 9 of 10) protein_coding-exon (ENSMUSG00000006906.10, exon 9 of 10) 2981 ENSMUSG00000108484.1 ENSMUSG00000108484 ENSMUST00000206792 Gm18537 transcribed_processed_pseudogene Interval_13326 chr10 14985321 14987217 + 0 NA Intergenic Intergenic 1599 ENSMUSG00000088730.1 ENSMUSG00000088730 ENSMUST00000158105 Gm23892 snoRNA Interval_2898 chr1 48651499 48653216 + 0 NA Intergenic Intergenic 80733 ENSMUSG00000101721.1 ENSMUSG00000101721 ENSMUST00000189223 Gm8354 processed_pseudogene Interval_93000 chr2 69441060 69441351 + 0 NA intron (ENSMUSG00000027070.14, intron 66 of 78) protein_coding-intron (ENSMUSG00000027070.14, intron 66 of 78) 60760 ENSMUSG00000027068.6 ENSMUSG00000027068 ENSMUST00000063690 Dhrs9 protein_coding Interval_151620 chr7 125418042 125419120 + 0 NA promoter-TSS (ENSMUSG00000108814.1) lincRNA-promoter-TSS (ENSMUSG00000108814.1) -467 ENSMUSG00000108814.1 ENSMUSG00000108814 ENSMUST00000206549 Gm30717 lincRNA Interval_82052 chr18 67374773 67375847 + 0 NA Intergenic Intergenic -16957 ENSMUSG00000001473.7 ENSMUSG00000001473 ENSMUST00000236667 Tubb6 protein_coding Interval_39722 chr12 95381350 95382000 + 0 NA Intergenic Intergenic -2724 ENSMUSG00000064972.1 ENSMUSG00000064972 ENSMUST00000083038 Gm26055 snRNA Interval_100227 chr2 167782566 167782801 + 0 NA TTS (ENSMUSG00000084797.1) lincRNA-TTS (ENSMUSG00000084797.1) 630 ENSMUSG00000087624.1 ENSMUSG00000087624 ENSMUST00000124850 9230111E07Rik lincRNA Interval_123033 chr5 28912467 28912736 + 0 NA intron (ENSMUSG00000097726.7, intron 5 of 6) antisense-intron (ENSMUSG00000097726.7, intron 5 of 6) -283986 ENSMUSG00000029130.12 ENSMUSG00000029130 ENSMUST00000163050 Rnf32 protein_coding Interval_5876 chr1 92888761 92889821 + 0 NA intron (ENSMUSG00000034212.14, intron 4 of 17) protein_coding-intron (ENSMUSG00000034212.14, intron 4 of 17) -17571 ENSMUSG00000034212.14 ENSMUSG00000034212 ENSMUST00000112998 Ankmy1 protein_coding Interval_1698 chr1 31383849 31384099 + 0 NA Intergenic Intergenic 97029 ENSMUSG00000094215.2 ENSMUSG00000094215 ENSMUST00000178167 Gm6489 processed_pseudogene Interval_96410 chr2 122270024 122270515 + 0 NA Intergenic Intergenic 28180 ENSMUSG00000068452.8 ENSMUSG00000068452 ENSMUST00000155820 Duox2 protein_coding Interval_93282 chr2 71672837 71673057 + 0 NA Intergenic Intergenic -46470 ENSMUSG00000064263.6 ENSMUSG00000064263 ENSMUST00000079720 Platr26 lincRNA Interval_106789 chr3 100857442 100857701 + 0 NA intron (ENSMUSG00000051076.8, intron 1 of 5) protein_coding-intron (ENSMUSG00000051076.8, intron 1 of 5) 32112 ENSMUSG00000051076.8 ENSMUSG00000051076 ENSMUST00000054791 Vtcn1 protein_coding Interval_21692 chr11 3734497 3734707 + 0 NA intron (ENSMUSG00000020435.17, intron 2 of 2) protein_coding-intron (ENSMUSG00000020435.17, intron 2 of 13) -36276 ENSMUSG00000083015.1 ENSMUSG00000083015 ENSMUST00000117960 Gm16518 processed_pseudogene Interval_45611 chr13 56243155 56243362 + 0 NA intron (ENSMUSG00000097361.1, intron 1 of 4) lincRNA-intron (ENSMUSG00000097361.1, intron 1 of 4) 682 ENSMUSG00000097361.1 ENSMUSG00000097361 ENSMUST00000181629 4930550C17Rik lincRNA Interval_48245 chr13 97406609 97407913 + 0 NA Intergenic Intergenic 31027 ENSMUSG00000114425.1 ENSMUSG00000114425 ENSMUST00000223964 Gm33447 lincRNA Interval_1792 chr1 33804237 33804479 + 0 NA intron (ENSMUSG00000042197.13, intron 3 of 3) protein_coding-intron (ENSMUSG00000042197.13, intron 3 of 14) 10068 ENSMUSG00000042197.13 ENSMUSG00000042197 ENSMUST00000125723 Zfp451 protein_coding Interval_137608 chr6 75326378 75327059 + 0 NA Intergenic Intergenic -28659 ENSMUSG00000107951.1 ENSMUSG00000107951 ENSMUST00000204734 Gm6210 processed_pseudogene Interval_111567 chr4 23567617 23568405 + 0 NA Intergenic Intergenic -49571 ENSMUSG00000082876.1 ENSMUSG00000082876 ENSMUST00000118402 Gm11889 processed_pseudogene Interval_46161 chr13 62115559 62116352 + 0 NA intron (ENSMUSG00000114036.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000114036.1, intron 1 of 1) -9774 ENSMUSG00000113504.1 ENSMUSG00000113504 ENSMUST00000221048 Selenok-ps5 processed_pseudogene Interval_165413 chr9 47587772 47588129 + 0 NA intron (ENSMUSG00000032076.20, intron 1 of 8) protein_coding-intron (ENSMUSG00000032076.20, intron 1 of 8) 57598 ENSMUSG00000032076.20 ENSMUSG00000032076 ENSMUST00000034581 Cadm1 protein_coding Interval_28048 chr11 72455818 72457005 + 0 NA promoter-TSS (ENSMUSG00000040447.15) protein_coding-promoter-TSS (ENSMUSG00000040447.15) -61 ENSMUSG00000040447.15 ENSMUSG00000040447 ENSMUST00000147418 Spns2 protein_coding Interval_155610 chr8 35137107 35138019 + 0 NA Intergenic Intergenic -4031 ENSMUSG00000097106.1 ENSMUSG00000097106 ENSMUST00000180440 Rpl31-ps23 processed_pseudogene Interval_13793 chr10 22506168 22507724 + 0 NA Intergenic Intergenic -53426 ENSMUSG00000097473.1 ENSMUSG00000097473 ENSMUST00000180890 Gm26585 processed_pseudogene Interval_3871 chr1 64038072 64038905 + 0 NA intron (ENSMUSG00000025959.13, intron 3 of 3) protein_coding-intron (ENSMUSG00000025959.13, intron 3 of 3) 4013 ENSMUSG00000098487.1 ENSMUSG00000098487 ENSMUST00000184798 Mir6899 miRNA Interval_98020 chr2 146803022 146803462 + 0 NA Intergenic Intergenic 36490 ENSMUSG00000087618.1 ENSMUSG00000087618 ENSMUST00000139345 Gm14114 lincRNA Interval_168647 chr9 85326369 85328845 + 0 NA promoter-TSS (ENSMUSG00000032265.14) protein_coding-promoter-TSS (ENSMUSG00000032265.14) -259 ENSMUSG00000032265.14 ENSMUSG00000032265 ENSMUST00000187711 Tent5a protein_coding Interval_113733 chr4 57901063 57902436 + 0 NA Intergenic Intergenic 14548 ENSMUSG00000052117.5 ENSMUSG00000052117 ENSMUST00000063816 D630039A03Rik protein_coding Interval_132820 chr5 148090306 148090642 + 0 NA intron (ENSMUSG00000029651.16, intron 1 of 3) protein_coding-intron (ENSMUSG00000029651.16, intron 3 of 14) 93903 ENSMUSG00000066554.6 ENSMUSG00000066554 ENSMUST00000150411 Gm10167 processed_pseudogene Interval_144592 chr7 26694205 26695168 + 0 NA Intergenic Intergenic -8249 ENSMUSG00000040650.8 ENSMUSG00000040650 ENSMUST00000077356 Cyp2b23 protein_coding Interval_123207 chr5 30636967 30638423 + 0 NA Intergenic Intergenic -10241 ENSMUSG00000093710.1 ENSMUSG00000093710 ENSMUST00000176598 Mir5625 miRNA Interval_34272 chr11 121894450 121895416 + 0 NA Intergenic Intergenic -7965 ENSMUSG00000082947.1 ENSMUSG00000082947 ENSMUST00000120180 Gm12587 processed_pseudogene Interval_158726 chr8 85578108 85578802 + 0 NA Intergenic Intergenic -21377 ENSMUSG00000110341.1 ENSMUSG00000110341 ENSMUST00000210575 Gm45424 TEC Interval_154799 chr8 23437153 23438138 + 0 NA intron (ENSMUSG00000031548.7, intron 2 of 2) protein_coding-intron (ENSMUSG00000031548.7, intron 2 of 2) 26143 ENSMUSG00000031548.7 ENSMUSG00000031548 ENSMUST00000033952 Sfrp1 protein_coding Interval_153874 chr8 10414422 10416173 + 0 NA intron (ENSMUSG00000039057.11, intron 16 of 34) protein_coding-intron (ENSMUSG00000039057.11, intron 15 of 34) 166009 ENSMUSG00000039057.11 ENSMUSG00000039057 ENSMUST00000042103 Myo16 protein_coding Interval_110297 chr3 156166071 156166276 + 0 NA Intergenic Intergenic -98413 ENSMUSG00000104573.1 ENSMUSG00000104573 ENSMUST00000199214 Gm42886 processed_pseudogene Interval_109724 chr3 146327657 146328981 + 0 NA Intergenic Intergenic 3899 ENSMUSG00000105209.1 ENSMUSG00000105209 ENSMUST00000197740 Gm43334 TEC Interval_138426 chr6 88105685 88108026 + 0 NA Intergenic Intergenic -2597 ENSMUSG00000099095.1 ENSMUSG00000099095 ENSMUST00000185149 Mir6376 miRNA Interval_171032 chr9 113819814 113820029 + 0 NA intron (ENSMUSG00000033392.16, intron 8 of 10) protein_coding-intron (ENSMUSG00000033392.16, intron 2 of 32) -43623 ENSMUSG00000087992.1 ENSMUSG00000087992 ENSMUST00000157367 Gm25059 snoRNA Interval_163868 chr9 27307391 27308878 + 0 NA intron (ENSMUSG00000034275.18, intron 1 of 19) protein_coding-intron (ENSMUSG00000034275.18, intron 1 of 14) 8930 ENSMUSG00000034275.18 ENSMUSG00000034275 ENSMUST00000214187 Igsf9b protein_coding Interval_49358 chr13 111451584 111452752 + 0 NA intron (ENSMUSG00000032745.18, intron 1 of 5) protein_coding-intron (ENSMUSG00000032745.18, intron 5 of 12) 1255 ENSMUSG00000032745.18 ENSMUSG00000032745 ENSMUST00000129638 Gpbp1 protein_coding Interval_81826 chr18 65031918 65032145 + 0 NA intron (ENSMUSG00000024589.18, intron 1 of 29) protein_coding-intron (ENSMUSG00000024589.18, intron 1 of 29) -30856 ENSMUSG00000117895.1 ENSMUSG00000117895 ENSMUST00000237218 Gm50368 antisense Interval_5850 chr1 92528750 92529147 + 0 NA Intergenic Intergenic -10529 ENSMUSG00000042849.11 ENSMUSG00000042849 ENSMUST00000189174 Olfr1414 protein_coding Interval_113297 chr4 53227467 53228644 + 0 NA Intergenic Intergenic -10494 ENSMUSG00000087192.7 ENSMUSG00000087192 ENSMUST00000139222 4930412L05Rik processed_transcript Interval_11269 chr1 180597987 180598213 + 0 NA promoter-TSS (ENSMUSG00000026496.11) protein_coding-promoter-TSS (ENSMUSG00000026496.11) -888 ENSMUSG00000026496.11 ENSMUSG00000026496 ENSMUST00000195560 Parp1 protein_coding Interval_46339 chr13 64053972 64054584 + 0 NA Intergenic Intergenic 34923 ENSMUSG00000033122.14 ENSMUSG00000033122 ENSMUST00000222810 Hsd17b3 protein_coding Interval_24165 chr11 30848494 30849571 + 0 NA intron (ENSMUSG00000040850.17, intron 36 of 46) protein_coding-intron (ENSMUSG00000040850.17, intron 36 of 46) -16437 ENSMUSG00000040850.17 ENSMUSG00000040850 ENSMUST00000155719 Psme4 protein_coding Interval_117891 chr4 126902279 126903208 + 0 NA intron (ENSMUSG00000042446.16, intron 8 of 23) protein_coding-intron (ENSMUSG00000042446.16, intron 14 of 29) -41631 ENSMUSG00000088984.1 ENSMUSG00000088984 ENSMUST00000158359 Gm25604 snoRNA Interval_29338 chr11 83297394 83297592 + 0 NA TTS (ENSMUSG00000018733.10) protein_coding-TTS (ENSMUSG00000018733.10) 1404 ENSMUSG00000018733.10 ENSMUSG00000018733 ENSMUST00000136369 Pex12 protein_coding Interval_89785 chr2 25426872 25427184 + 0 NA TTS (ENSMUSG00000036587.13) protein_coding-TTS (ENSMUSG00000036587.13) 2380 ENSMUSG00000036587.13 ENSMUSG00000036587 ENSMUST00000142156 Fut7 protein_coding Interval_109534 chr3 144185258 144185618 + 0 NA Intergenic Intergenic 13824 ENSMUSG00000104969.1 ENSMUSG00000104969 ENSMUST00000198564 Gm43445 sense_intronic Interval_57435 chr15 10814360 10814728 + 0 NA promoter-TSS (ENSMUSG00000115151.1) lincRNA-promoter-TSS (ENSMUSG00000115151.1) -283 ENSMUSG00000115151.1 ENSMUSG00000115151 ENSMUST00000228418 Gm19276 lincRNA Interval_48506 chr13 99524026 99524235 + 0 NA Intergenic Intergenic 7501 ENSMUSG00000097027.2 ENSMUSG00000097027 ENSMUST00000181939 Gm26559 bidirectional_promoter_lncRNA Interval_147636 chr7 70385414 70385641 + 0 NA promoter-TSS (ENSMUSG00000100005.7) processed_transcript-promoter-TSS (ENSMUSG00000100005.7) 2883 ENSMUSG00000101559.1 ENSMUSG00000101559 ENSMUST00000189033 Gm28258 lincRNA Interval_160078 chr8 106233443 106233731 + 0 NA promoter-TSS (ENSMUSG00000060098.11) protein_coding-promoter-TSS (ENSMUSG00000060098.11) -938 ENSMUSG00000060098.11 ENSMUSG00000060098 ENSMUST00000134151 Prmt7 protein_coding Interval_153918 chr8 11036057 11036600 + 0 NA intron (ENSMUSG00000096938.7, intron 1 of 4) processed_transcript-intron (ENSMUSG00000096938.7, intron 1 of 4) -13250 ENSMUSG00000096938.7 ENSMUSG00000096938 ENSMUST00000181315 9530052E02Rik processed_transcript Interval_59091 chr15 43529486 43530908 + 0 NA Intergenic Intergenic 52956 ENSMUSG00000022337.7 ENSMUSG00000022337 ENSMUST00000227055 Emc2 protein_coding Interval_162696 chr9 7892002 7892295 + 0 NA Intergenic Intergenic -31822 ENSMUSG00000032000.17 ENSMUSG00000032000 ENSMUST00000159672 Birc3 protein_coding Interval_97713 chr2 143113936 143114108 + 0 NA Intergenic Intergenic 16317 ENSMUSG00000082903.1 ENSMUSG00000082903 ENSMUST00000117873 Gm14083 processed_pseudogene Interval_47222 chr13 78209676 78211665 + 0 NA intron (ENSMUSG00000087143.9, intron 1 of 1) antisense-intron (ENSMUSG00000087143.9, intron 1 of 2) 7883 ENSMUSG00000087143.9 ENSMUSG00000087143 ENSMUST00000183171 A830082K12Rik antisense Interval_136034 chr6 50137806 50138530 + 0 NA intron (ENSMUSG00000038388.14, intron 1 of 9) protein_coding-intron (ENSMUSG00000038388.14, intron 1 of 13) 27890 ENSMUSG00000038388.14 ENSMUSG00000038388 ENSMUST00000167319 Mpp6 protein_coding Interval_15317 chr10 44458451 44459411 + 0 NA promoter-TSS (ENSMUSG00000038151.13) protein_coding-promoter-TSS (ENSMUSG00000038151.13) -1721 ENSMUSG00000038151.13 ENSMUSG00000038151 ENSMUST00000167340 Prdm1 protein_coding Interval_123621 chr5 33895277 33895452 + 0 NA TTS (ENSMUSG00000057406.16) protein_coding-TTS (ENSMUSG00000057406.16) 3607 ENSMUSG00000098830.1 ENSMUSG00000098830 ENSMUST00000183676 Mir7024 miRNA Interval_116603 chr4 115995082 115995342 + 0 NA intron (ENSMUSG00000034171.13, intron 13 of 14) protein_coding-intron (ENSMUSG00000034171.13, intron 13 of 14) 4725 ENSMUSG00000034171.13 ENSMUSG00000034171 ENSMUST00000150614 Faah protein_coding Interval_157934 chr8 76692815 76693667 + 0 NA intron (ENSMUSG00000074235.4, intron 5 of 5) bidirectional_promoter_lncRNA-intron (ENSMUSG00000074235.4, intron 5 of 5) -73959 ENSMUSG00000099012.1 ENSMUSG00000099012 ENSMUST00000185045 Gm27355 rRNA Interval_152639 chr7 135631908 135633032 + 0 NA intron (ENSMUSG00000041836.10, intron 1 of 19) protein_coding-intron (ENSMUSG00000041836.10, intron 2 of 20) 19813 ENSMUSG00000097471.8 ENSMUSG00000097471 ENSMUST00000210953 5830432E09Rik antisense Interval_138663 chr6 90944844 90945063 + 0 NA intron (ENSMUSG00000034312.15, intron 1 of 15) protein_coding-intron (ENSMUSG00000034312.15, intron 1 of 15) 39134 ENSMUSG00000099662.1 ENSMUSG00000099662 ENSMUST00000117103 Ppp1r2-ps2 processed_pseudogene Interval_61407 chr15 81392959 81393413 + 0 NA exon (ENSMUSG00000022403.15, exon 1 of 1) protein_coding-exon (ENSMUSG00000022403.15, exon 1 of 1) 1417 ENSMUSG00000022403.15 ENSMUSG00000022403 ENSMUST00000169204 St13 protein_coding Interval_89760 chr2 25254914 25255988 + 0 NA promoter-TSS (ENSMUSG00000006471.18) protein_coding-promoter-TSS (ENSMUSG00000006471.18) 12 ENSMUSG00000078201.5 ENSMUSG00000078201 ENSMUST00000104998 Tmem203 protein_coding Interval_134978 chr6 34277679 34277991 + 0 NA Intergenic Intergenic -12430 ENSMUSG00000086762.1 ENSMUSG00000086762 ENSMUST00000138275 Gm14546 antisense Interval_9825 chr1 162704847 162705438 + 0 NA promoter-TSS (ENSMUSG00000040225.15) protein_coding-promoter-TSS (ENSMUSG00000040225.15) 25579 ENSMUSG00000040225.15 ENSMUSG00000040225 ENSMUST00000183286 Prrc2c protein_coding Interval_130484 chr5 128253040 128253448 + 0 NA intron (ENSMUSG00000034310.8, intron 2 of 8) protein_coding-intron (ENSMUSG00000034310.8, intron 2 of 8) -11905 ENSMUSG00000104581.1 ENSMUSG00000104581 ENSMUST00000197363 Gm42497 TEC Interval_111150 chr4 13217501 13219779 + 0 NA Intergenic Intergenic 48410 ENSMUSG00000080359.2 ENSMUSG00000080359 ENSMUST00000116709 Gm26250 miRNA Interval_44814 chr13 48848730 48849021 + 0 NA intron (ENSMUSG00000038025.8, intron 1 of 21) protein_coding-intron (ENSMUSG00000038025.8, intron 1 of 21) -22237 ENSMUSG00000086889.1 ENSMUSG00000086889 ENSMUST00000123212 Phf2os1 antisense Interval_9780 chr1 162134850 162135082 + 0 NA promoter-TSS (ENSMUSG00000040265.16) protein_coding-promoter-TSS (ENSMUSG00000040265.16) -46498 ENSMUSG00000102994.1 ENSMUSG00000102994 ENSMUST00000193239 Gm37767 TEC Interval_147129 chr7 63669069 63669338 + 0 NA intron (ENSMUSG00000033510.14, intron 1 of 10) protein_coding-intron (ENSMUSG00000033510.14, intron 4 of 13) 18388 ENSMUSG00000033510.14 ENSMUSG00000033510 ENSMUST00000177511 Otud7a protein_coding Interval_8106 chr1 135755224 135755838 + 0 NA Intergenic Intergenic -11603 ENSMUSG00000041801.5 ENSMUSG00000041801 ENSMUST00000136445 Phlda3 protein_coding Interval_79023 chr18 24006574 24007171 + 0 NA Intergenic Intergenic 13448 ENSMUSG00000051469.14 ENSMUSG00000051469 ENSMUST00000148525 Zfp24 protein_coding Interval_52427 chr14 46222375 46223915 + 0 NA Intergenic Intergenic 139117 ENSMUSG00000044285.8 ENSMUSG00000044285 ENSMUST00000111388 Ubb-ps transcribed_processed_pseudogene Interval_83753 chr19 4403144 4403428 + 0 NA Intergenic Intergenic -36037 ENSMUSG00000087132.8 ENSMUSG00000087132 ENSMUST00000136632 A930001C03Rik processed_transcript Interval_41508 chr12 115508596 115508802 + 0 NA promoter-TSS (ENSMUSG00000094088.2) IG_V_gene-promoter-TSS (ENSMUSG00000094088.2) -668 ENSMUSG00000094088.2 ENSMUSG00000094088 ENSMUST00000103535 Ighv1-64 IG_V_gene Interval_164372 chr9 36435037 36435820 + 0 NA TTS (ENSMUSG00000023093.7) protein_coding-TTS (ENSMUSG00000023093.7) 3544 ENSMUSG00000023093.7 ENSMUSG00000023093 ENSMUST00000041537 Pate12 protein_coding Interval_910 chr1 13115243 13115550 + 0 NA intron (ENSMUSG00000042414.7, intron 7 of 7) protein_coding-intron (ENSMUSG00000042414.7, intron 7 of 7) 11767 ENSMUSG00000042414.7 ENSMUSG00000042414 ENSMUST00000047577 Prdm14 protein_coding Interval_111855 chr4 32005078 32005304 + 0 NA intron (ENSMUSG00000028284.13, intron 6 of 7) protein_coding-intron (ENSMUSG00000028284.13, intron 13 of 16) -6450 ENSMUSG00000084440.1 ENSMUSG00000084440 ENSMUST00000122491 Gm26254 snRNA Interval_87199 chr19 46833210 46833380 + 0 NA intron (ENSMUSG00000064105.13, intron 1 of 1) protein_coding-intron (ENSMUSG00000064105.13, intron 1 of 6) -32365 ENSMUSG00000064105.13 ENSMUSG00000064105 ENSMUST00000235671 Cnnm2 protein_coding Interval_162871 chr9 10879493 10880507 + 0 NA intron (ENSMUSG00000039488.15, intron 1 of 20) protein_coding-intron (ENSMUSG00000039488.15, intron 1 of 24) -24345 ENSMUSG00000109590.1 ENSMUSG00000109590 ENSMUST00000210677 Gm32710 antisense Interval_169484 chr9 98207621 98207819 + 0 NA Intergenic Intergenic -20567 ENSMUSG00000046995.3 ENSMUSG00000046995 ENSMUST00000061643 2610303G11Rik lincRNA Interval_148875 chr7 89558441 89559395 + 0 NA intron (ENSMUSG00000108875.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000108875.1, intron 1 of 1) 6552 ENSMUSG00000108875.1 ENSMUSG00000108875 ENSMUST00000208619 Gm45064 lincRNA Interval_141809 chr6 134640467 134641485 + 0 NA promoter-TSS (ENSMUSG00000042992.15) protein_coding-promoter-TSS (ENSMUSG00000042992.15) -8488 ENSMUSG00000032718.4 ENSMUSG00000032718 ENSMUST00000047443 Mansc1 protein_coding Interval_121103 chr4 153068871 153069570 + 0 NA Intergenic Intergenic -55636 ENSMUSG00000080360.1 ENSMUSG00000080360 ENSMUST00000116710 Gm25779 miRNA Interval_28248 chr11 74672056 74673626 + 0 NA Intergenic Intergenic 23301 ENSMUSG00000020741.17 ENSMUSG00000020741 ENSMUST00000128155 Cluh protein_coding Interval_27892 chr11 70675204 70676021 + 0 NA exon (ENSMUSG00000040712.16, exon 13 of 23) protein_coding-exon (ENSMUSG00000040712.16, exon 13 of 23) -6394 ENSMUSG00000018287.12 ENSMUSG00000018287 ENSMUST00000129434 Spag7 protein_coding Interval_153211 chr7 142474939 142475385 + 0 NA exon (ENSMUSG00000018819.10, exon 1 of 3) protein_coding-exon (ENSMUSG00000018819.10, exon 1 of 3) -8242 ENSMUSG00000018819.10 ENSMUSG00000018819 ENSMUST00000142408 Lsp1 protein_coding Interval_85791 chr19 31367104 31367371 + 0 NA intron (ENSMUSG00000052920.16, intron 2 of 17) protein_coding-intron (ENSMUSG00000052920.16, intron 2 of 17) 254691 ENSMUSG00000118011.1 ENSMUSG00000118011 ENSMUST00000235353 Gm50266 processed_pseudogene Interval_84930 chr19 18975073 18975401 + 0 NA TTS (ENSMUSG00000036192.15) protein_coding-TTS (ENSMUSG00000036192.15) 25863 ENSMUSG00000036192.15 ENSMUSG00000036192 ENSMUST00000147907 Rorb protein_coding Interval_146249 chr7 44962413 44962903 + 0 NA intron (ENSMUSG00000007783.10, intron 3 of 3) protein_coding-intron (ENSMUSG00000007783.10, intron 13 of 18) 3529 ENSMUSG00000007783.10 ENSMUSG00000007783 ENSMUST00000212255 Cpt1c protein_coding Interval_1271 chr1 18830962 18831387 + 0 NA Intergenic Intergenic 122746 ENSMUSG00000101306.1 ENSMUSG00000101306 ENSMUST00000189030 Gm5252 processed_pseudogene Interval_169841 chr9 102413371 102413893 + 0 NA Intergenic Intergenic 40514 ENSMUSG00000088138.1 ENSMUSG00000088138 ENSMUST00000157513 Gm22894 snRNA Interval_15198 chr10 43292021 43292722 + 0 NA intron (ENSMUSG00000038240.13, intron 1 of 7) protein_coding-intron (ENSMUSG00000038240.13, intron 1 of 7) -26989 ENSMUSG00000089673.1 ENSMUSG00000089673 ENSMUST00000159442 Gm16546 processed_pseudogene Interval_172884 chrX 52777701 52777991 + 0 NA Intergenic Intergenic -5097 ENSMUSG00000083621.1 ENSMUSG00000083621 ENSMUST00000119571 Gm14586 processed_pseudogene Interval_32320 chr11 106919698 106921335 + 0 NA promoter-TSS (ENSMUSG00000018363.16) protein_coding-promoter-TSS (ENSMUSG00000018363.16) -157 ENSMUSG00000018363.16 ENSMUSG00000018363 ENSMUST00000144027 Smurf2 protein_coding Interval_153079 chr7 141228060 141229298 + 0 NA promoter-TSS (ENSMUSG00000038611.17) protein_coding-promoter-TSS (ENSMUSG00000038611.17) -6744 ENSMUSG00000038611.17 ENSMUSG00000038611 ENSMUST00000144250 Phrf1 protein_coding Interval_100722 chr2 172032149 172032853 + 0 NA Intergenic Intergenic 10965 ENSMUSG00000067578.3 ENSMUSG00000067578 ENSMUST00000087950 Cbln4 protein_coding Interval_126857 chr5 95937730 95938725 + 0 NA Intergenic Intergenic -18724 ENSMUSG00000023078.6 ENSMUSG00000023078 ENSMUST00000023840 Cxcl13 protein_coding Interval_172601 chrX 38121111 38121973 + 0 NA exon (ENSMUSG00000050197.5, exon 1 of 3) protein_coding-exon (ENSMUSG00000050197.5, exon 1 of 3) 323 ENSMUSG00000050197.5 ENSMUSG00000050197 ENSMUST00000152730 Rhox13 protein_coding Interval_114236 chr4 69721134 69722326 + 0 NA Intergenic Intergenic 29752 ENSMUSG00000082998.3 ENSMUSG00000082998 ENSMUST00000117230 Gm11221 processed_pseudogene Interval_37988 chr12 73617702 73619614 + 0 NA intron (ENSMUSG00000021108.18, intron 2 of 14) protein_coding-intron (ENSMUSG00000021108.18, intron 1 of 13) 33862 ENSMUSG00000021108.18 ENSMUSG00000021108 ENSMUST00000220898 Prkch protein_coding Interval_167258 chr9 66801762 66803021 + 0 NA exon (ENSMUSG00000092131.1, exon 1 of 2) antisense-exon (ENSMUSG00000092131.1, exon 1 of 2) 168 ENSMUSG00000092131.1 ENSMUSG00000092131 ENSMUST00000169153 BC050972 antisense Interval_45758 chr13 57761804 57762503 + 0 NA intron (ENSMUSG00000056222.15, intron 2 of 10) protein_coding-intron (ENSMUSG00000056222.15, intron 1 of 9) 146179 ENSMUSG00000056222.15 ENSMUSG00000056222 ENSMUST00000185905 Spock1 protein_coding Interval_80852 chr18 49400181 49400437 + 0 NA Intergenic Intergenic 72054 ENSMUSG00000117724.1 ENSMUSG00000117724 ENSMUST00000235797 Gm50231 processed_pseudogene Interval_137612 chr6 75602708 75603076 + 0 NA Intergenic Intergenic -29434 ENSMUSG00000107830.1 ENSMUSG00000107830 ENSMUST00000203062 4933439N06Rik TEC Interval_161594 chr8 121449302 121449712 + 0 NA intron (ENSMUSG00000092329.1, intron 1 of 15) protein_coding-intron (ENSMUSG00000092329.1, intron 1 of 15) 14527 ENSMUSG00000097438.1 ENSMUSG00000097438 ENSMUST00000181666 Gm26784 lincRNA Interval_87062 chr19 45874967 45875699 + 0 NA intron (ENSMUSG00000039901.10, intron 23 of 25) protein_coding-intron (ENSMUSG00000039901.10, intron 23 of 25) 2793 ENSMUSG00000117972.1 ENSMUSG00000117972 ENSMUST00000236365 Gm6813 processed_pseudogene Interval_139631 chr6 103885279 103885546 + 0 NA Intergenic Intergenic -52834 ENSMUSG00000089091.1 ENSMUSG00000089091 ENSMUST00000158466 Gm25656 snRNA Interval_173173 chrX 73797551 73798955 + 0 NA TTS (ENSMUSG00000085669.1) processed_transcript-TTS (ENSMUSG00000085669.1) 3038 ENSMUSG00000085669.1 ENSMUSG00000085669 ENSMUST00000148522 Gm14817 processed_transcript Interval_12929 chr10 8259404 8259985 + 0 NA intron (ENSMUSG00000047712.8, intron 2 of 6) protein_coding-intron (ENSMUSG00000047712.8, intron 5 of 7) 42548 ENSMUSG00000047712.8 ENSMUSG00000047712 ENSMUST00000061601 Ust protein_coding Interval_103804 chr3 53109653 53110761 + 0 NA TTS (ENSMUSG00000104968.1) antisense-TTS (ENSMUSG00000104968.1) 539 ENSMUSG00000104615.1 ENSMUSG00000104615 ENSMUST00000198280 Gm43804 TEC Interval_15781 chr10 56439621 56441088 + 0 NA intron (ENSMUSG00000112833.1, intron 3 of 5) lincRNA-intron (ENSMUSG00000112833.1, intron 3 of 5) -2751 ENSMUSG00000112175.1 ENSMUSG00000112175 ENSMUST00000220158 4930452L12Rik lincRNA Interval_111134 chr4 12691581 12691934 + 0 NA Intergenic Intergenic 94369 ENSMUSG00000104211.1 ENSMUSG00000104211 ENSMUST00000194728 Gm37985 TEC Interval_59506 chr15 54767993 54768730 + 0 NA Intergenic Intergenic -2848 ENSMUSG00000098237.1 ENSMUSG00000098237 ENSMUST00000182543 Gm7577 processed_pseudogene Interval_45666 chr13 56682266 56683028 + 0 NA Intergenic Intergenic -17283 ENSMUSG00000098962.1 ENSMUSG00000098962 ENSMUST00000184060 Gm27698 misc_RNA Interval_116400 chr4 111493871 111494109 + 0 NA intron (ENSMUSG00000061298.14, intron 2 of 6) protein_coding-intron (ENSMUSG00000061298.14, intron 6 of 12) 60793 ENSMUSG00000028545.13 ENSMUSG00000028545 ENSMUST00000123667 Bend5 protein_coding Interval_45510 chr13 55548631 55549736 + 0 NA exon (ENSMUSG00000021495.10, exon 7 of 11) protein_coding-exon (ENSMUSG00000021495.10, exon 7 of 11) -5863 ENSMUSG00000021495.10 ENSMUSG00000021495 ENSMUST00000225262 Fam193b protein_coding Interval_14843 chr10 40425402 40426338 + 0 NA intron (ENSMUSG00000038481.13, intron 2 of 11) protein_coding-intron (ENSMUSG00000038481.13, intron 2 of 12) -75767 ENSMUSG00000038491.9 ENSMUSG00000038491 ENSMUST00000044774 Cdk19os antisense Interval_53155 chr14 54759619 54760220 + 0 NA intron (ENSMUSG00000022180.7, intron 1 of 3) protein_coding-intron (ENSMUSG00000022180.7, intron 1 of 10) 22027 ENSMUSG00000022180.7 ENSMUSG00000022180 ENSMUST00000226646 Slc7a8 protein_coding Interval_69293 chr16 91962373 91962710 + 0 NA exon (ENSMUSG00000087190.2, exon 6 of 6) antisense-exon (ENSMUSG00000087190.2, exon 6 of 6) -18393 ENSMUSG00000099268.1 ENSMUSG00000099268 ENSMUST00000184087 Gm27773 miRNA Interval_68161 chr16 66046534 66046745 + 0 NA Intergenic Intergenic 85414 ENSMUSG00000088181.1 ENSMUSG00000088181 ENSMUST00000157556 Gm22217 misc_RNA Interval_38445 chr12 79079105 79079311 + 0 NA intron (ENSMUSG00000060716.7, intron 28 of 28) protein_coding-intron (ENSMUSG00000060716.7, intron 28 of 28) 10437 ENSMUSG00000021120.11 ENSMUSG00000021120 ENSMUST00000217979 Pigh protein_coding Interval_149823 chr7 101831568 101831761 + 0 NA exon (ENSMUSG00000032737.13, exon 10 of 29) protein_coding-exon (ENSMUSG00000032737.13, exon 10 of 29) 4939 ENSMUSG00000032737.13 ENSMUSG00000032737 ENSMUST00000209481 Inppl1 protein_coding Interval_102716 chr3 30557171 30557540 + 0 NA intron (ENSMUSG00000102256.1, intron 1 of 3) lincRNA-intron (ENSMUSG00000102256.1, intron 1 of 3) 4774 ENSMUSG00000104243.1 ENSMUSG00000104243 ENSMUST00000195484 Gm38153 processed_pseudogene Interval_21430 chr10 128558904 128559364 + 0 NA TTS (ENSMUSG00000105001.1) miRNA-TTS (ENSMUSG00000105001.1) 185 ENSMUSG00000105001.1 ENSMUSG00000105001 ENSMUST00000197964 Gm47275 miRNA Interval_6666 chr1 118633318 118634120 + 0 NA intron (ENSMUSG00000026380.10, intron 2 of 14) protein_coding-intron (ENSMUSG00000026380.10, intron 2 of 14) 4685 ENSMUSG00000089601.1 ENSMUSG00000089601 ENSMUST00000158976 Gm22094 rRNA Interval_161326 chr8 119759730 119759977 + 0 NA TTS (ENSMUSG00000034105.9) protein_coding-TTS (ENSMUSG00000034105.9) 18541 ENSMUSG00000034105.9 ENSMUSG00000034105 ENSMUST00000212534 Meak7 protein_coding Interval_82790 chr18 77084933 77085503 + 0 NA intron (ENSMUSG00000025423.16, intron 1 of 13) protein_coding-intron (ENSMUSG00000025423.16, intron 1 of 12) 19973 ENSMUSG00000025423.16 ENSMUSG00000025423 ENSMUST00000168882 Pias2 protein_coding Interval_74721 chr17 56148744 56149409 + 0 NA Intergenic Intergenic -13401 ENSMUSG00000044469.8 ENSMUSG00000044469 ENSMUST00000077788 Tnfaip8l1 protein_coding Interval_66947 chr16 38693512 38693774 + 0 NA intron (ENSMUSG00000022799.4, intron 1 of 1) protein_coding-intron (ENSMUSG00000022799.4, intron 1 of 11) -7774 ENSMUSG00000081651.1 ENSMUSG00000081651 ENSMUST00000122206 Gm15530 processed_pseudogene Interval_6304 chr1 105735077 105735721 + 0 NA TTS (ENSMUSG00000026319.13) protein_coding-TTS (ENSMUSG00000026319.13) 26826 ENSMUSG00000104044.1 ENSMUSG00000104044 ENSMUST00000192363 Gm37566 TEC Interval_8133 chr1 135909018 135909211 + 0 NA intron (ENSMUSG00000026413.12, intron 1 of 13) protein_coding-intron (ENSMUSG00000026413.12, intron 1 of 13) -10025 ENSMUSG00000102414.1 ENSMUSG00000102414 ENSMUST00000191612 Gm36938 TEC Interval_83548 chr18 89136395 89136725 + 0 NA Intergenic Intergenic 34932 ENSMUSG00000023066.10 ENSMUSG00000023066 ENSMUST00000237196 Rttn protein_coding Interval_63342 chr15 100451842 100452762 + 0 NA Intergenic Intergenic 2618 ENSMUSG00000084688.1 ENSMUSG00000084688 ENSMUST00000122739 n-R5s43 rRNA Interval_35818 chr12 30429818 30430052 + 0 NA intron (ENSMUSG00000102098.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000102098.1, intron 1 of 2) 28136 ENSMUSG00000088872.1 ENSMUSG00000088872 ENSMUST00000158247 Gm25865 miRNA Interval_44674 chr13 47071971 47072195 + 0 NA exon (ENSMUSG00000038080.17, exon 5 of 5) protein_coding-exon (ENSMUSG00000038080.17, exon 5 of 5) 26254 ENSMUSG00000021377.15 ENSMUSG00000021377 ENSMUST00000150652 Dek protein_coding Interval_119649 chr4 138994518 138994780 + 0 NA intron (ENSMUSG00000041143.16, intron 4 of 12) protein_coding-intron (ENSMUSG00000041143.16, intron 4 of 15) 21740 ENSMUSG00000041143.16 ENSMUSG00000041143 ENSMUST00000124835 Tmco4 protein_coding Interval_15512 chr10 50197364 50197893 + 0 NA Intergenic Intergenic -13479 ENSMUSG00000112049.1 ENSMUSG00000112049 ENSMUST00000218126 Gm48269 processed_pseudogene Interval_119624 chr4 138821143 138822043 + 0 NA intron (ENSMUSG00000041193.15, intron 1 of 5) protein_coding-intron (ENSMUSG00000041193.15, intron 1 of 5) 5883 ENSMUSG00000087894.1 ENSMUSG00000087894 ENSMUST00000157269 Gm25280 snRNA Interval_94216 chr2 85223934 85224997 + 0 NA Intergenic Intergenic -9210 ENSMUSG00000085025.1 ENSMUSG00000085025 ENSMUST00000136578 Gm13715 lincRNA Interval_7396 chr1 130979201 130979842 + 0 NA Intergenic Intergenic -39406 ENSMUSG00000016524.12 ENSMUSG00000016524 ENSMUST00000112465 Il19 protein_coding Interval_33594 chr11 117403628 117404598 + 0 NA Intergenic Intergenic -10276 ENSMUSG00000086588.1 ENSMUSG00000086588 ENSMUST00000124901 Gm11729 lincRNA Interval_40153 chr12 102008506 102008726 + 0 NA Intergenic Intergenic -31548 ENSMUSG00000113902.1 ENSMUSG00000113902 ENSMUST00000222608 Ndufb1-ps protein_coding Interval_126521 chr5 89526556 89527754 + 0 NA promoter-TSS (ENSMUSG00000035528.4) protein_coding-promoter-TSS (ENSMUSG00000035528.4) -274 ENSMUSG00000035528.4 ENSMUSG00000035528 ENSMUST00000048557 Npffr2 protein_coding Interval_40138 chr12 101906041 101906401 + 0 NA exon (ENSMUSG00000093437.1, exon 1 of 1) processed_pseudogene-exon (ENSMUSG00000093437.1, exon 1 of 1) 141 ENSMUSG00000093437.1 ENSMUSG00000093437 ENSMUST00000176181 Gm20702 processed_pseudogene Interval_111381 chr4 20062702 20062963 + 0 NA intron (ENSMUSG00000073987.4, intron 7 of 8) protein_coding-intron (ENSMUSG00000073987.4, intron 7 of 8) 20780 ENSMUSG00000073987.4 ENSMUSG00000073987 ENSMUST00000098242 Ggh protein_coding Interval_112653 chr4 43831805 43832633 + 0 NA exon (ENSMUSG00000111611.1, exon 3 of 3) protein_coding-exon (ENSMUSG00000111611.1, exon 3 of 3) 4298 ENSMUSG00000111611.1 ENSMUSG00000111611 ENSMUST00000215442 Olfr157 protein_coding Interval_111795 chr4 29301494 29301782 + 0 NA Intergenic Intergenic 106118 ENSMUSG00000082486.1 ENSMUSG00000082486 ENSMUST00000117609 Gm11919 processed_pseudogene Interval_23890 chr11 27745854 27746116 + 0 NA Intergenic Intergenic -137127 ENSMUSG00000084064.1 ENSMUSG00000084064 ENSMUST00000112483 Gm12079 processed_pseudogene Interval_79106 chr18 24602899 24604355 + 0 NA promoter-TSS (ENSMUSG00000024271.8) protein_coding-promoter-TSS (ENSMUSG00000024271.8) -112 ENSMUSG00000024270.11 ENSMUSG00000024270 ENSMUST00000152504 Slc39a6 protein_coding Interval_58067 chr15 27593621 27594212 + 0 NA exon (ENSMUSG00000022265.7, exon 12 of 12) protein_coding-exon (ENSMUSG00000022265.7, exon 12 of 12) 22422 ENSMUSG00000098416.1 ENSMUSG00000098416 ENSMUST00000184426 Mir7117 miRNA Interval_26547 chr11 58757409 58757964 + 0 NA promoter-TSS (ENSMUSG00000107677.2) protein_coding-promoter-TSS (ENSMUSG00000107677.2) 4952 ENSMUSG00000107677.2 ENSMUSG00000107677 ENSMUST00000203731 Olfr316 protein_coding Interval_3458 chr1 58504241 58505416 + 0 NA promoter-TSS (ENSMUSG00000085054.2) lincRNA-promoter-TSS (ENSMUSG00000085054.2) 127 ENSMUSG00000026037.14 ENSMUSG00000026037 ENSMUST00000191206 Orc2 protein_coding Interval_95996 chr2 119041012 119041648 + 0 NA Intergenic Intergenic -5817 ENSMUSG00000027326.13 ENSMUSG00000027326 ENSMUST00000028802 Knl1 protein_coding Interval_148420 chr7 81143112 81143680 + 0 NA intron (ENSMUSG00000025726.11, intron 10 of 17) protein_coding-intron (ENSMUSG00000025726.11, intron 10 of 17) 18348 ENSMUSG00000083820.1 ENSMUSG00000083820 ENSMUST00000118488 Ndufs6b processed_pseudogene Interval_133423 chr6 4952818 4953280 + 0 NA intron (ENSMUSG00000032827.15, intron 1 of 17) protein_coding-intron (ENSMUSG00000032827.15, intron 2 of 15) -5934 ENSMUSG00000097396.1 ENSMUSG00000097396 ENSMUST00000180645 Gm26556 TEC Interval_46489 chr13 66554335 66555048 + 0 NA Intergenic Intergenic -3471 ENSMUSG00000114434.1 ENSMUSG00000114434 ENSMUST00000224388 Gm48360 processed_pseudogene Interval_89771 chr2 25332050 25333186 + 0 NA promoter-TSS (ENSMUSG00000036646.13) protein_coding-promoter-TSS (ENSMUSG00000036646.13) -155 ENSMUSG00000036646.13 ENSMUSG00000036646 ENSMUST00000126210 Man1b1 protein_coding Interval_72488 chr17 30141629 30142572 + 0 NA intron (ENSMUSG00000044477.12, intron 1 of 3) protein_coding-intron (ENSMUSG00000044477.12, intron 3 of 4) 5910 ENSMUSG00000044477.12 ENSMUSG00000044477 ENSMUST00000234091 Zfand3 protein_coding Interval_155893 chr8 40775357 40776524 + 0 NA Intergenic Intergenic 14196 ENSMUSG00000110032.1 ENSMUSG00000110032 ENSMUST00000210152 Gm8436 processed_pseudogene Interval_120253 chr4 144934086 144935236 + 0 NA Intergenic Intergenic 24187 ENSMUSG00000103911.1 ENSMUSG00000103911 ENSMUST00000193467 Gm38074 TEC Interval_132262 chr5 143701543 143702717 + 0 NA intron (ENSMUSG00000018001.18, intron 8 of 12) protein_coding-intron (ENSMUSG00000018001.18, intron 8 of 12) 25887 ENSMUSG00000051306.7 ENSMUSG00000051306 ENSMUST00000129606 Usp42 protein_coding Interval_8687 chr1 147802209 147802542 + 0 NA Intergenic Intergenic -187710 ENSMUSG00000101973.1 ENSMUSG00000101973 ENSMUST00000190402 Gm29516 processed_pseudogene Interval_48980 chr13 106695149 106695353 + 0 NA Intergenic Intergenic 66328 ENSMUSG00000114422.1 ENSMUSG00000114422 ENSMUST00000225713 Gm30411 lincRNA Interval_133489 chr6 5723769 5724333 + 0 NA Intergenic Intergenic -33368 ENSMUSG00000029757.16 ENSMUSG00000029757 ENSMUST00000203520 Dync1i1 protein_coding Interval_145775 chr7 38213407 38213908 + 0 NA Intergenic Intergenic 14359 ENSMUSG00000074170.5 ENSMUSG00000074170 ENSMUST00000098513 Plekhf1 protein_coding Interval_88453 chr2 5219573 5221014 + 0 NA intron (ENSMUSG00000026676.7, intron 2 of 2) protein_coding-intron (ENSMUSG00000026676.7, intron 2 of 2) 39822 ENSMUSG00000084606.1 ENSMUSG00000084606 ENSMUST00000122657 Gm23118 snRNA Interval_122939 chr5 27662210 27662427 + 0 NA intron (ENSMUSG00000061576.15, intron 9 of 12) protein_coding-intron (ENSMUSG00000061576.15, intron 13 of 25) -108443 ENSMUSG00000086505.1 ENSMUSG00000086505 ENSMUST00000124392 Gm16058 antisense Interval_87102 chr19 46113218 46113483 + 0 NA Intergenic Intergenic -11580 ENSMUSG00000117703.1 ENSMUSG00000117703 ENSMUST00000236376 Gm50306 lincRNA Interval_2142 chr1 36697598 36699076 + 0 NA exon (ENSMUSG00000037351.9, exon 11 of 11) protein_coding-exon (ENSMUSG00000037351.9, exon 11 of 11) 6727 ENSMUSG00000061518.11 ENSMUSG00000061518 ENSMUST00000193235 Cox5b protein_coding Interval_117842 chr4 126556544 126557635 + 0 NA promoter-TSS (ENSMUSG00000042489.15) protein_coding-promoter-TSS (ENSMUSG00000042489.15) 94 ENSMUSG00000042489.15 ENSMUSG00000042489 ENSMUST00000128202 Clspn protein_coding Interval_86837 chr19 44265530 44267762 + 0 NA Intergenic Intergenic -5625 ENSMUSG00000117958.1 ENSMUSG00000117958 ENSMUST00000235961 Gm35183 transcribed_processed_pseudogene Interval_110308 chr3 156477141 156477968 + 0 NA Intergenic Intergenic 84133 ENSMUSG00000085084.7 ENSMUSG00000085084 ENSMUST00000140941 4930570G19Rik lincRNA Interval_166471 chr9 59756578 59757031 + 0 NA intron (ENSMUSG00000039585.15, intron 1 of 43) protein_coding-intron (ENSMUSG00000039585.15, intron 1 of 41) -6166 ENSMUSG00000051705.13 ENSMUSG00000051705 ENSMUST00000216045 Senp8 protein_coding Interval_48030 chr13 95384219 95385024 + 0 NA Intergenic Intergenic -9287 ENSMUSG00000021681.8 ENSMUSG00000021681 ENSMUST00000161671 Aggf1 protein_coding Interval_63375 chr15 100673574 100675170 + 0 NA TTS (ENSMUSG00000023031.8) protein_coding-TTS (ENSMUSG00000023031.8) 4694 ENSMUSG00000023031.8 ENSMUSG00000023031 ENSMUST00000230642 Cela1 protein_coding Interval_47060 chr13 74966972 74967659 + 0 NA Intergenic Intergenic 103010 ENSMUSG00000086743.2 ENSMUSG00000086743 ENSMUST00000129154 Hnrnpa1l2-ps processed_pseudogene Interval_106013 chr3 90629337 90629694 + 0 NA Intergenic Intergenic 15755 ENSMUSG00000001025.8 ENSMUSG00000001025 ENSMUST00000200289 S100a6 protein_coding Interval_364 chr1 4582171 4582661 + 0 NA TTS (ENSMUSG00000104328.1) lincRNA-TTS (ENSMUSG00000104328.1) 3836 ENSMUSG00000104328.1 ENSMUSG00000104328 ENSMUST00000195771 Gm37323 lincRNA Interval_132560 chr5 146330215 146331086 + 0 NA Intergenic Intergenic 44474 ENSMUSG00000029635.15 ENSMUSG00000029635 ENSMUST00000160924 Cdk8 protein_coding Interval_135040 chr6 34903199 34903852 + 0 NA intron (ENSMUSG00000058486.11, intron 6 of 13) protein_coding-intron (ENSMUSG00000058486.11, intron 6 of 14) 7308 ENSMUSG00000058486.11 ENSMUSG00000058486 ENSMUST00000134830 Wdr91 protein_coding Interval_2231 chr1 37246220 37247284 + 0 NA intron (ENSMUSG00000026114.14, intron 4 of 6) protein_coding-intron (ENSMUSG00000026114.14, intron 3 of 5) 28373 ENSMUSG00000026114.14 ENSMUSG00000026114 ENSMUST00000027288 Cnga3 protein_coding Interval_166877 chr9 63601972 63603070 + 0 NA promoter-TSS (ENSMUSG00000037257.8) protein_coding-promoter-TSS (ENSMUSG00000037257.8) -104 ENSMUSG00000037801.13 ENSMUSG00000037801 ENSMUST00000170960 Iqch protein_coding Interval_66028 chr16 31037478 31037980 + 0 NA intron (ENSMUSG00000047434.14, intron 2 of 2) protein_coding-intron (ENSMUSG00000047434.14, intron 2 of 3) 32097 ENSMUSG00000047434.14 ENSMUSG00000047434 ENSMUST00000142870 Xxylt1 protein_coding Interval_137568 chr6 73301973 73302253 + 0 NA Intergenic Intergenic 8528 ENSMUSG00000107931.1 ENSMUSG00000107931 ENSMUST00000204041 Gm44475 processed_pseudogene Interval_62267 chr15 89322547 89323685 + 0 NA exon (ENSMUSG00000054136.6, exon 1 of 3) protein_coding-exon (ENSMUSG00000054136.6, exon 1 of 3) 396 ENSMUSG00000054136.6 ENSMUSG00000054136 ENSMUST00000066991 Adm2 protein_coding Interval_16473 chr10 63056668 63057790 + 0 NA intron (ENSMUSG00000020072.15, intron 2 of 2) protein_coding-intron (ENSMUSG00000020072.15, intron 9 of 9) 238 ENSMUSG00000087030.1 ENSMUSG00000087030 ENSMUST00000155982 Gm16143 antisense Interval_17365 chr10 76088446 76088935 + 0 NA intron (ENSMUSG00000020226.9, intron 7 of 14) protein_coding-intron (ENSMUSG00000020226.9, intron 7 of 14) 10073 ENSMUSG00000086798.1 ENSMUSG00000086798 ENSMUST00000124320 Gm16222 antisense Interval_134914 chr6 33527689 33528367 + 0 NA intron (ENSMUSG00000029763.17, intron 9 of 12) protein_coding-intron (ENSMUSG00000029763.17, intron 9 of 17) 95020 ENSMUSG00000107358.1 ENSMUSG00000107358 ENSMUST00000201039 Gm43168 TEC Interval_26853 chr11 61089907 61092063 + 0 NA Intergenic Intergenic 25181 ENSMUSG00000042529.14 ENSMUSG00000042529 ENSMUST00000108717 Kcnj12 protein_coding Interval_142912 chr6 146887969 146889515 + 0 NA intron (ENSMUSG00000016487.15, intron 1 of 27) protein_coding-intron (ENSMUSG00000016487.15, intron 1 of 26) 31881 ENSMUSG00000030292.10 ENSMUSG00000030292 ENSMUST00000148099 Smco2 protein_coding Interval_67291 chr16 45578890 45579211 + 0 NA intron (ENSMUSG00000033210.16, intron 16 of 27) protein_coding-intron (ENSMUSG00000033210.16, intron 16 of 27) -31330 ENSMUSG00000022659.13 ENSMUSG00000022659 ENSMUST00000023339 Gcsam protein_coding Interval_31769 chr11 102738944 102739857 + 0 NA intron (ENSMUSG00000086162.1, intron 3 of 10) unitary_pseudogene-intron (ENSMUSG00000086162.1, intron 3 of 10) 6995 ENSMUSG00000086162.1 ENSMUSG00000086162 ENSMUST00000124025 Gm16342 unitary_pseudogene Interval_64242 chr16 9688527 9689096 + 0 NA intron (ENSMUSG00000059003.12, intron 5 of 13) protein_coding-intron (ENSMUSG00000059003.12, intron 3 of 11) 306112 ENSMUSG00000059003.12 ENSMUSG00000059003 ENSMUST00000197242 Grin2a protein_coding Interval_154176 chr8 13219704 13220938 + 0 NA Intergenic Intergenic 19601 ENSMUSG00000099338.1 ENSMUSG00000099338 ENSMUST00000187595 2810030D12Rik bidirectional_promoter_lncRNA Interval_46721 chr13 69630333 69630884 + 0 NA promoter-TSS (ENSMUSG00000021595.18) protein_coding-promoter-TSS (ENSMUSG00000021595.18) -15707 ENSMUSG00000091133.1 ENSMUSG00000091133 ENSMUST00000168625 Gm17108 sense_overlapping Interval_89655 chr2 24062057 24062308 + 0 NA Intergenic Intergenic -13103 ENSMUSG00000026986.14 ENSMUSG00000026986 ENSMUST00000114497 Hnmt protein_coding Interval_61640 chr15 83099749 83100619 + 0 NA promoter-TSS (ENSMUSG00000058586.12) protein_coding-promoter-TSS (ENSMUSG00000058586.12) -79 ENSMUSG00000058586.12 ENSMUSG00000058586 ENSMUST00000169461 Serhl protein_coding Interval_103639 chr3 51350517 51351421 + 0 NA Intergenic Intergenic -19253 ENSMUSG00000103654.1 ENSMUSG00000103654 ENSMUST00000191618 Gm37203 processed_pseudogene Interval_96129 chr2 119939559 119940154 + 0 NA intron (ENSMUSG00000033943.15, intron 14 of 20) protein_coding-intron (ENSMUSG00000033943.15, intron 14 of 24) -33047 ENSMUSG00000033902.12 ENSMUSG00000033902 ENSMUST00000148161 Mapkbp1 protein_coding Interval_120476 chr4 148855364 148856677 + 0 NA intron (ENSMUSG00000028977.17, intron 2 of 20) protein_coding-intron (ENSMUSG00000028977.17, intron 2 of 15) 58304 ENSMUSG00000086766.1 ENSMUSG00000086766 ENSMUST00000151967 Gm15969 antisense Interval_93479 chr2 73428997 73429620 + 0 NA TTS (ENSMUSG00000075284.10) protein_coding-TTS (ENSMUSG00000075284.10) 7399 ENSMUSG00000085768.1 ENSMUSG00000085768 ENSMUST00000123663 Gm13707 antisense Interval_122953 chr5 27800528 27800734 + 0 NA Intergenic Intergenic -8940 ENSMUSG00000002221.11 ENSMUSG00000002221 ENSMUST00000199714 Paxip1 protein_coding Interval_81543 chr18 61601750 61601978 + 0 NA Intergenic Intergenic -37789 ENSMUSG00000098098.7 ENSMUSG00000098098 ENSMUST00000183087 Bvht lincRNA Interval_152906 chr7 139626798 139626986 + 0 NA intron (ENSMUSG00000049571.18, intron 39 of 58) protein_coding-intron (ENSMUSG00000049571.18, intron 39 of 58) -20234 ENSMUSG00000049571.18 ENSMUSG00000049571 ENSMUST00000138129 Cfap46 protein_coding Interval_130423 chr5 127500508 127500881 + 0 NA intron (ENSMUSG00000034324.16, intron 3 of 8) protein_coding-intron (ENSMUSG00000034324.16, intron 3 of 8) -52560 ENSMUSG00000034324.16 ENSMUSG00000034324 ENSMUST00000145748 Tmem132c protein_coding Interval_106413 chr3 96026849 96027070 + 0 NA intron (ENSMUSG00000015747.5, intron 13 of 14) protein_coding-intron (ENSMUSG00000015747.5, intron 13 of 14) 30760 ENSMUSG00000015747.5 ENSMUSG00000015747 ENSMUST00000140518 Vps45 protein_coding Interval_45735 chr13 57515021 57516148 + 0 NA intron (ENSMUSG00000056222.15, intron 6 of 10) protein_coding-intron (ENSMUSG00000056222.15, intron 4 of 9) 238906 ENSMUSG00000114411.1 ENSMUSG00000114411 ENSMUST00000224461 Gm48176 processed_pseudogene Interval_147796 chr7 73601221 73603321 + 0 NA Intergenic Intergenic -6677 ENSMUSG00000108724.1 ENSMUSG00000108724 ENSMUST00000206025 Gm44734 lincRNA Interval_62868 chr15 97581471 97582465 + 0 NA Intergenic Intergenic -23678 ENSMUSG00000116131.1 ENSMUSG00000116131 ENSMUST00000230522 Gm49506 processed_pseudogene Interval_41309 chr12 112623560 112624059 + 0 NA intron (ENSMUSG00000011148.14, intron 1 of 3) protein_coding-intron (ENSMUSG00000011148.14, intron 1 of 12) 3732 ENSMUSG00000011148.14 ENSMUSG00000011148 ENSMUST00000221720 Adssl1 protein_coding Interval_28609 chr11 77132616 77133919 + 0 NA intron (ENSMUSG00000050944.14, intron 3 of 11) protein_coding-intron (ENSMUSG00000050944.14, intron 7 of 17) -16361 ENSMUSG00000102038.1 ENSMUSG00000102038 ENSMUST00000119288 Gm12345 processed_pseudogene Interval_9336 chr1 156389275 156389644 + 0 NA intron (ENSMUSG00000026601.14, intron 10 of 24) protein_coding-intron (ENSMUSG00000026601.14, intron 6 of 10) 23419 ENSMUSG00000078193.2 ENSMUSG00000078193 ENSMUST00000102782 Gm2000 protein_coding Interval_111577 chr4 23664392 23664626 + 0 NA Intergenic Intergenic -4165 ENSMUSG00000084179.1 ENSMUSG00000084179 ENSMUST00000119585 Gm11890 processed_pseudogene Interval_96833 chr2 128697949 128699565 + 0 NA promoter-TSS (ENSMUSG00000014361.5) protein_coding-promoter-TSS (ENSMUSG00000014361.5) 54948 ENSMUSG00000085036.1 ENSMUSG00000085036 ENSMUST00000145178 Gm14011 antisense Interval_51606 chr14 30659904 30660250 + 0 NA intron (ENSMUSG00000052395.17, intron 3 of 4) protein_coding-intron (ENSMUSG00000052395.17, intron 2 of 12) 5670 ENSMUSG00000052395.17 ENSMUSG00000052395 ENSMUST00000226805 Rft1 protein_coding Interval_152116 chr7 129547437 129547643 + 0 NA Intergenic Intergenic -60267 ENSMUSG00000042055.13 ENSMUSG00000042055 ENSMUST00000136560 Wdr11 protein_coding Interval_14576 chr10 36396335 36397046 + 0 NA exon (ENSMUSG00000110731.1, exon 4 of 4) lincRNA-exon (ENSMUSG00000110731.1, exon 4 of 4) 5098 ENSMUSG00000110731.1 ENSMUSG00000110731 ENSMUST00000214163 Gm47049 lincRNA Interval_99142 chr2 157451554 157452471 + 0 NA intron (ENSMUSG00000027646.15, intron 3 of 3) protein_coding-intron (ENSMUSG00000027646.15, intron 2 of 13) 27896 ENSMUSG00000027646.15 ENSMUSG00000027646 ENSMUST00000109529 Src protein_coding Interval_84226 chr19 8879973 8881308 + 0 NA intron (ENSMUSG00000071654.6, intron 1 of 1) protein_coding-intron (ENSMUSG00000071654.6, intron 1 of 1) 283 ENSMUSG00000071654.6 ENSMUSG00000071654 ENSMUST00000096253 Uqcc3 protein_coding Interval_152248 chr7 130923464 130924070 + 0 NA intron (ENSMUSG00000030849.18, intron 2 of 6) protein_coding-intron (ENSMUSG00000030849.18, intron 2 of 6) 15499 ENSMUSG00000104914.1 ENSMUSG00000104914 ENSMUST00000198082 Mir7061 miRNA Interval_77174 chr17 87096712 87097010 + 0 NA Intergenic Intergenic -10830 ENSMUSG00000037104.9 ENSMUSG00000037104 ENSMUST00000234421 Socs5 protein_coding Interval_23115 chr11 20020369 20021709 + 0 NA exon (ENSMUSG00000045671.17, exon 6 of 6) protein_coding-exon (ENSMUSG00000045671.17, exon 6 of 6) 66469 ENSMUSG00000045671.17 ENSMUSG00000045671 ENSMUST00000123036 Spred2 protein_coding Interval_65399 chr16 22137178 22137379 + 0 NA promoter-TSS (ENSMUSG00000033581.17) protein_coding-promoter-TSS (ENSMUSG00000033581.17) -16042 ENSMUSG00000033581.17 ENSMUSG00000033581 ENSMUST00000127696 Igf2bp2 protein_coding Interval_30678 chr11 95832988 95834598 + 0 NA exon (ENSMUSG00000018381.15, exon 6 of 8) protein_coding-exon (ENSMUSG00000018381.15, exon 6 of 8) 3030 ENSMUSG00000050860.6 ENSMUSG00000050860 ENSMUST00000176538 Phospho1 protein_coding Interval_72775 chr17 32091252 32092203 + 0 NA promoter-TSS (ENSMUSG00000002791.17) transcribed_unprocessed_pseudogene-promoter-TSS (ENSMUSG00000002791.17) -1472 ENSMUSG00000002791.17 ENSMUSG00000002791 ENSMUST00000235497 Pdxk-ps transcribed_unprocessed_pseudogene Interval_31056 chr11 97913217 97913660 + 0 NA Intergenic Intergenic 28302 ENSMUSG00000093013.1 ENSMUSG00000093013 ENSMUST00000175272 Gm22461 miRNA Interval_65232 chr16 20714717 20718069 + 0 NA promoter-TSS (ENSMUSG00000022843.17) protein_coding-promoter-TSS (ENSMUSG00000022843.17) -281 ENSMUSG00000022843.17 ENSMUSG00000022843 ENSMUST00000132512 Clcn2 protein_coding Interval_85410 chr19 25574911 25575995 + 0 NA intron (ENSMUSG00000024837.15, intron 3 of 3) protein_coding-intron (ENSMUSG00000024837.15, intron 4 of 4) -34848 ENSMUSG00000042372.5 ENSMUSG00000042372 ENSMUST00000048935 Dmrt3 protein_coding Interval_86307 chr19 38538892 38540036 + 0 NA intron (ENSMUSG00000024998.17, intron 2 of 32) protein_coding-intron (ENSMUSG00000024998.17, intron 1 of 31) -66262 ENSMUSG00000088940.1 ENSMUSG00000088940 ENSMUST00000158315 Gm24930 misc_RNA Interval_38613 chr12 80551473 80551955 + 0 NA intron (ENSMUSG00000021130.8, intron 2 of 15) protein_coding-intron (ENSMUSG00000021130.8, intron 1 of 14) -32798 ENSMUSG00000097801.1 ENSMUSG00000097801 ENSMUST00000181852 Gm26777 bidirectional_promoter_lncRNA Interval_159621 chr8 95830007 95830653 + 0 NA exon (ENSMUSG00000110661.1, exon 2 of 2) lincRNA-exon (ENSMUSG00000110661.1, exon 2 of 2) 3345 ENSMUSG00000110661.1 ENSMUSG00000110661 ENSMUST00000211921 Gm31805 lincRNA Interval_159439 chr8 94694691 94696628 + 0 NA intron (ENSMUSG00000031775.5, intron 1 of 3) protein_coding-intron (ENSMUSG00000031775.5, intron 1 of 3) 2626 ENSMUSG00000088331.1 ENSMUSG00000088331 ENSMUST00000157706 Gm22846 misc_RNA Interval_141070 chr6 124802456 124803290 + 0 NA Intergenic Intergenic -6012 ENSMUSG00000038451.13 ENSMUSG00000038451 ENSMUST00000112473 Spsb2 protein_coding Interval_113877 chr4 59523836 59524041 + 0 NA intron (ENSMUSG00000028382.15, intron 2 of 13) protein_coding-intron (ENSMUSG00000028382.15, intron 2 of 13) -8809 ENSMUSG00000080831.1 ENSMUSG00000080831 ENSMUST00000119529 Gm12529 processed_pseudogene Interval_125201 chr5 65311429 65311804 + 0 NA intron (ENSMUSG00000029191.16, intron 3 of 24) protein_coding-intron (ENSMUSG00000029191.16, intron 3 of 24) -2622 ENSMUSG00000105935.1 ENSMUSG00000105935 ENSMUST00000197871 Gm43628 TEC Interval_120481 chr4 148882587 148882968 + 0 NA intron (ENSMUSG00000028977.17, intron 2 of 20) protein_coding-intron (ENSMUSG00000028977.17, intron 2 of 15) 31547 ENSMUSG00000086766.1 ENSMUSG00000086766 ENSMUST00000151967 Gm15969 antisense Interval_160506 chr8 110119878 110120236 + 0 NA Intergenic Intergenic 11265 ENSMUSG00000095941.3 ENSMUSG00000095941 ENSMUST00000178785 Tle7 protein_coding Interval_138535 chr6 88990076 88991425 + 0 NA intron (ENSMUSG00000055403.13, intron 1 of 2) lincRNA-intron (ENSMUSG00000055403.13, intron 1 of 2) 40067 ENSMUSG00000055403.13 ENSMUSG00000055403 ENSMUST00000153981 4933427D06Rik lincRNA Interval_24374 chr11 32729639 32729891 + 0 NA intron (ENSMUSG00000020271.17, intron 5 of 12) protein_coding-intron (ENSMUSG00000020271.17, intron 6 of 13) 45874 ENSMUSG00000098054.1 ENSMUSG00000098054 ENSMUST00000182196 Gm8192 processed_pseudogene Interval_81346 chr18 58659139 58660268 + 0 NA exon (ENSMUSG00000024601.9, exon 1 of 5) protein_coding-exon (ENSMUSG00000024601.9, exon 1 of 5) 223 ENSMUSG00000024601.9 ENSMUSG00000024601 ENSMUST00000238139 Isoc1 protein_coding Interval_117249 chr4 120968984 120970138 + 0 NA exon (ENSMUSG00000032870.8, exon 10 of 10) protein_coding-exon (ENSMUSG00000032870.8, exon 10 of 10) 3761 ENSMUSG00000106436.1 ENSMUSG00000106436 ENSMUST00000199525 Mir7015 miRNA Interval_150954 chr7 116676505 116677419 + 0 NA Intergenic Intergenic 14523 ENSMUSG00000088234.1 ENSMUSG00000088234 ENSMUST00000157609 Gm25423 snRNA Interval_73908 chr17 45424156 45424387 + 0 NA intron (ENSMUSG00000023932.9, intron 5 of 15) protein_coding-intron (ENSMUSG00000023932.9, intron 5 of 15) 9270 ENSMUSG00000023932.9 ENSMUSG00000023932 ENSMUST00000232910 Cdc5l protein_coding Interval_162714 chr9 7965585 7965938 + 0 NA promoter-TSS (ENSMUSG00000053110.13) protein_coding-promoter-TSS (ENSMUSG00000053110.13) -77 ENSMUSG00000092185.1 ENSMUSG00000092185 ENSMUST00000174760 Gm20416 processed_transcript Interval_116455 chr4 112790382 112790921 + 0 NA Intergenic Intergenic -15824 ENSMUSG00000048766.6 ENSMUSG00000048766 ENSMUST00000137128 Skint10 protein_coding Interval_143700 chr7 15805386 15805679 + 0 NA Intergenic Intergenic -17372 ENSMUSG00000105410.1 ENSMUSG00000105410 ENSMUST00000197059 Gtpbp4-ps7 processed_pseudogene Interval_110659 chr4 5782505 5783140 + 0 NA intron (ENSMUSG00000049119.14, intron 1 of 1) protein_coding-intron (ENSMUSG00000049119.14, intron 2 of 2) 9943 ENSMUSG00000049119.14 ENSMUSG00000049119 ENSMUST00000145365 Fam110b protein_coding Interval_106134 chr3 93536830 93537421 + 0 NA Intergenic Intergenic -6380 ENSMUSG00000103031.1 ENSMUSG00000103031 ENSMUST00000195273 Gm29950 processed_pseudogene Interval_49857 chr13 117235438 117236088 + 0 NA intron (ENSMUSG00000021728.8, intron 3 of 3) protein_coding-intron (ENSMUSG00000021728.8, intron 2 of 8) -14691 ENSMUSG00000091423.2 ENSMUSG00000091423 ENSMUST00000238456 Gm17509 antisense Interval_138767 chr6 91710154 91711404 + 0 NA TTS (ENSMUSG00000108574.1) TEC-TTS (ENSMUSG00000108574.1) 1373 ENSMUSG00000108526.1 ENSMUSG00000108526 ENSMUST00000206938 Gm45828 TEC Interval_65758 chr16 27457239 27457704 + 0 NA Intergenic Intergenic 68602 ENSMUSG00000038127.15 ENSMUSG00000038127 ENSMUST00000149077 Ccdc50 protein_coding Interval_67033 chr16 41686364 41686701 + 0 NA intron (ENSMUSG00000061080.11, intron 3 of 8) protein_coding-intron (ENSMUSG00000061080.11, intron 1 of 5) -255440 ENSMUSG00000101463.1 ENSMUSG00000101463 ENSMUST00000186327 Gm28750 antisense Interval_19470 chr10 99739296 99740501 + 0 NA intron (ENSMUSG00000113032.1, intron 1 of 1) antisense-intron (ENSMUSG00000113032.1, intron 1 of 1) -19608 ENSMUSG00000112304.1 ENSMUSG00000112304 ENSMUST00000217945 Gm35206 antisense Interval_1420 chr1 22078297 22078785 + 0 NA Intergenic Intergenic -47926 ENSMUSG00000099692.1 ENSMUSG00000099692 ENSMUST00000189850 Gm5696 processed_pseudogene Interval_118369 chr4 130943994 130944388 + 0 NA promoter-TSS (ENSMUSG00000040533.7) protein_coding-promoter-TSS (ENSMUSG00000040533.7) -194 ENSMUSG00000040533.7 ENSMUSG00000040533 ENSMUST00000102576 Matn1 protein_coding Interval_116581 chr4 115869698 115869911 + 0 NA intron (ENSMUSG00000028708.16, intron 7 of 8) protein_coding-intron (ENSMUSG00000028708.16, intron 7 of 12) 8772 ENSMUSG00000100081.1 ENSMUSG00000100081 ENSMUST00000187426 Gm29434 antisense Interval_105929 chr3 90133481 90133943 + 0 NA intron (ENSMUSG00000027939.11, intron 9 of 39) protein_coding-intron (ENSMUSG00000027939.11, intron 9 of 39) 6945 ENSMUSG00000104649.1 ENSMUSG00000104649 ENSMUST00000198020 Gm43712 unprocessed_pseudogene Interval_28441 chr11 75911843 75912190 + 0 NA promoter-TSS (ENSMUSG00000020847.15) protein_coding-promoter-TSS (ENSMUSG00000020847.15) 26413 ENSMUSG00000020847.15 ENSMUSG00000020847 ENSMUST00000152035 Rph3al protein_coding Interval_19207 chr10 95501097 95502395 + 0 NA intron (ENSMUSG00000062981.5, intron 1 of 3) protein_coding-intron (ENSMUSG00000062981.5, intron 1 of 5) -1223 ENSMUSG00000062981.5 ENSMUSG00000062981 ENSMUST00000218996 Mrpl42 protein_coding Interval_126910 chr5 97015670 97017123 + 0 NA intron (ENSMUSG00000034663.13, intron 1 of 13) protein_coding-intron (ENSMUSG00000034663.13, intron 1 of 15) 18707 ENSMUSG00000034663.13 ENSMUSG00000034663 ENSMUST00000035635 Bmp2k protein_coding Interval_110746 chr4 7962871 7963061 + 0 NA Intergenic Intergenic 142050 ENSMUSG00000094771.1 ENSMUSG00000094771 ENSMUST00000179446 Gm23860 snoRNA Interval_162844 chr9 10268951 10269786 + 0 NA intron (ENSMUSG00000039488.15, intron 3 of 24) protein_coding-intron (ENSMUSG00000039488.15, intron 1 of 22) 21219 ENSMUSG00000093959.1 ENSMUSG00000093959 ENSMUST00000178287 Gm24496 miRNA Interval_124906 chr5 59996732 59997055 + 0 NA TTS (ENSMUSG00000105158.1) TEC-TTS (ENSMUSG00000105158.1) 2668 ENSMUSG00000105158.1 ENSMUSG00000105158 ENSMUST00000197494 Gm42862 TEC Interval_173098 chrX 71600687 71601855 + 0 NA Intergenic Intergenic 43488 ENSMUSG00000015217.11 ENSMUSG00000015217 ENSMUST00000132145 Hmgb3 protein_coding Interval_166125 chr9 56876766 56877700 + 0 NA intron (ENSMUSG00000032911.6, intron 1 of 4) protein_coding-intron (ENSMUSG00000032911.6, intron 1 of 9) -12554 ENSMUSG00000045620.7 ENSMUSG00000045620 ENSMUST00000215694 Odf3l1 protein_coding Interval_151866 chr7 127212227 127213778 + 0 NA promoter-TSS (ENSMUSG00000030672.12) protein_coding-promoter-TSS (ENSMUSG00000030672.12) 4103 ENSMUSG00000030672.12 ENSMUSG00000030672 ENSMUST00000139613 Mylpf protein_coding Interval_80215 chr18 38324900 38325309 + 0 NA Intergenic Intergenic 13876 ENSMUSG00000052102.15 ENSMUSG00000052102 ENSMUST00000237313 Gnpda1 protein_coding Interval_131028 chr5 134651087 134651352 + 0 NA Intergenic Intergenic -11729 ENSMUSG00000040731.13 ENSMUSG00000040731 ENSMUST00000201263 Eif4h protein_coding Interval_144176 chr7 19808899 19809840 + 0 NA promoter-TSS (ENSMUSG00000087206.1) antisense-promoter-TSS (ENSMUSG00000087206.1) -240 ENSMUSG00000087206.1 ENSMUSG00000087206 ENSMUST00000128181 Gm16175 antisense Interval_66003 chr16 30863511 30864340 + 0 NA Intergenic Intergenic 6166 ENSMUSG00000116951.1 ENSMUSG00000116951 ENSMUST00000231571 Gm49756 lincRNA Interval_138083 chr6 85037677 85038532 + 0 NA intron (ENSMUSG00000033769.16, intron 1 of 2) protein_coding-intron (ENSMUSG00000033769.16, intron 1 of 16) -24470 ENSMUSG00000107629.1 ENSMUSG00000107629 ENSMUST00000203336 Gm44011 processed_pseudogene Interval_110119 chr3 153457381 153457601 + 0 NA intron (ENSMUSG00000052544.9, intron 1 of 2) protein_coding-intron (ENSMUSG00000052544.9, intron 1 of 2) 17163 ENSMUSG00000104964.1 ENSMUSG00000104964 ENSMUST00000196286 4930597L12Rik TEC Interval_25766 chr11 51601575 51602134 + 0 NA TTS (ENSMUSG00000020359.13) protein_coding-TTS (ENSMUSG00000020359.13) 2587 ENSMUSG00000020359.13 ENSMUSG00000020359 ENSMUST00000169995 Phykpl protein_coding Interval_88526 chr2 5839361 5839572 + 0 NA intron (ENSMUSG00000039128.13, intron 2 of 6) protein_coding-intron (ENSMUSG00000039128.13, intron 2 of 12) -5824 ENSMUSG00000025817.12 ENSMUSG00000025817 ENSMUST00000128604 Nudt5 protein_coding Interval_69940 chr17 3351390 3351963 + 0 NA intron (ENSMUSG00000023800.15, intron 1 of 26) protein_coding-intron (ENSMUSG00000023800.15, intron 1 of 26) -4609 ENSMUSG00000115330.1 ENSMUSG00000115330 ENSMUST00000226386 Gm49221 processed_pseudogene Interval_9804 chr1 162538691 162538897 + 0 NA TTS (ENSMUSG00000026694.19) protein_coding-TTS (ENSMUSG00000026694.19) 9735 ENSMUSG00000026694.19 ENSMUSG00000026694 ENSMUST00000195027 Eef1aknmt protein_coding Interval_39730 chr12 95708617 95709063 + 0 NA intron (ENSMUSG00000047414.6, intron 1 of 1) protein_coding-intron (ENSMUSG00000047414.6, intron 1 of 1) 13483 ENSMUSG00000047414.6 ENSMUSG00000047414 ENSMUST00000110117 Flrt2 protein_coding Interval_19276 chr10 95961692 95962152 + 0 NA intron (ENSMUSG00000036499.9, intron 1 of 1) protein_coding-intron (ENSMUSG00000036499.9, intron 1 of 28) 21272 ENSMUSG00000036499.9 ENSMUSG00000036499 ENSMUST00000218517 Eea1 protein_coding Interval_38501 chr12 79679961 79680714 + 0 NA intron (ENSMUSG00000059060.15, intron 8 of 10) protein_coding-intron (ENSMUSG00000059060.15, intron 8 of 10) 245157 ENSMUSG00000112765.1 ENSMUSG00000112765 ENSMUST00000219857 9430078K24Rik lincRNA Interval_105318 chr3 84867807 84868130 + 0 NA intron (ENSMUSG00000028086.15, intron 3 of 12) protein_coding-intron (ENSMUSG00000028086.15, intron 1 of 12) -5923 ENSMUSG00000102919.1 ENSMUSG00000102919 ENSMUST00000193246 Gm37726 TEC Interval_88496 chr2 5624416 5625843 + 0 NA intron (ENSMUSG00000039145.16, intron 1 of 1) protein_coding-intron (ENSMUSG00000039145.16, intron 1 of 10) 21558 ENSMUSG00000082013.1 ENSMUSG00000082013 ENSMUST00000117145 Gm13216 processed_pseudogene Interval_12154 chr1 190173367 190173759 + 0 NA intron (ENSMUSG00000079045.3, intron 1 of 1) antisense-intron (ENSMUSG00000079045.3, intron 1 of 1) -2883 ENSMUSG00000010175.13 ENSMUSG00000010175 ENSMUST00000177288 Prox1 protein_coding Interval_50823 chr14 20032137 20033022 + 0 NA Intergenic Intergenic 25718 ENSMUSG00000114498.1 ENSMUSG00000114498 ENSMUST00000224881 Gm48339 processed_pseudogene Interval_12635 chr10 4053554 4053968 + 0 NA intron (ENSMUSG00000040675.17, intron 19 of 27) protein_coding-intron (ENSMUSG00000040675.17, intron 19 of 27) 21481 ENSMUSG00000040675.17 ENSMUSG00000040675 ENSMUST00000154517 Mthfd1l protein_coding Interval_93134 chr2 70484220 70485244 + 0 NA Intergenic Intergenic 6736 ENSMUSG00000087264.1 ENSMUSG00000087264 ENSMUST00000154284 Gad1os antisense Interval_113506 chr4 55391753 55393807 + 0 NA promoter-TSS (ENSMUSG00000084144.1) processed_pseudogene-promoter-TSS (ENSMUSG00000084144.1) -79 ENSMUSG00000084144.1 ENSMUSG00000084144 ENSMUST00000120819 Gm12516 processed_pseudogene Interval_93748 chr2 76566908 76567541 + 0 NA promoter-TSS (ENSMUSG00000042359.18) protein_coding-promoter-TSS (ENSMUSG00000042359.18) 18884 ENSMUSG00000042359.18 ENSMUSG00000042359 ENSMUST00000124601 Osbpl6 protein_coding Interval_14990 chr10 41745721 41745998 + 0 NA promoter-TSS (ENSMUSG00000019813.16) protein_coding-promoter-TSS (ENSMUSG00000019813.16) -862 ENSMUSG00000102114.2 ENSMUSG00000102114 ENSMUST00000190793 BC048559 antisense Interval_171190 chr9 115071530 115071761 + 0 NA intron (ENSMUSG00000040875.12, intron 3 of 11) protein_coding-intron (ENSMUSG00000040875.12, intron 1 of 9) 73029 ENSMUSG00000040875.12 ENSMUSG00000040875 ENSMUST00000182413 Osbpl10 protein_coding Interval_35431 chr12 21626992 21627256 + 0 NA intron (ENSMUSG00000113498.1, intron 2 of 2) unprocessed_pseudogene-intron (ENSMUSG00000113498.1, intron 2 of 2) 3326 ENSMUSG00000113498.1 ENSMUSG00000113498 ENSMUST00000220842 Gm4036 unprocessed_pseudogene Interval_91912 chr2 51261440 51261727 + 0 NA intron (ENSMUSG00000086349.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000086349.1, intron 1 of 2) 19752 ENSMUSG00000086349.1 ENSMUSG00000086349 ENSMUST00000139497 Gm13497 lincRNA Interval_64028 chr16 5535460 5535668 + 0 NA Intergenic Intergenic -211407 ENSMUSG00000084573.1 ENSMUSG00000084573 ENSMUST00000122624 n-R5s30 rRNA Interval_70465 chr17 10396881 10397512 + 0 NA Intergenic Intergenic -59020 ENSMUSG00000089633.2 ENSMUSG00000089633 ENSMUST00000160738 A230009B12Rik antisense Interval_72177 chr17 28441038 28442428 + 0 NA promoter-TSS (ENSMUSG00000024222.17) protein_coding-promoter-TSS (ENSMUSG00000024222.17) -4767 ENSMUSG00000117084.1 ENSMUSG00000117084 ENSMUST00000232983 Gm22146 antisense Interval_62458 chr15 93153354 93154216 + 0 NA Intergenic Intergenic -16243 ENSMUSG00000116124.1 ENSMUSG00000116124 ENSMUST00000230014 Gm49420 processed_transcript Interval_158245 chr8 80426428 80426758 + 0 NA Intergenic Intergenic -67188 ENSMUSG00000051839.7 ENSMUSG00000051839 ENSMUST00000063359 Gypa protein_coding Interval_128921 chr5 116112920 116114071 + 0 NA Intergenic Intergenic -10119 ENSMUSG00000086655.1 ENSMUSG00000086655 ENSMUST00000127792 C330018A13Rik antisense Interval_152984 chr7 140266193 140266506 + 0 NA intron (ENSMUSG00000054672.13, intron 5 of 15) protein_coding-intron (ENSMUSG00000054672.13, intron 3 of 4) -31335 ENSMUSG00000054672.13 ENSMUSG00000054672 ENSMUST00000211749 5830411N06Rik protein_coding Interval_81891 chr18 65635958 65636417 + 0 NA exon (ENSMUSG00000117775.1, exon 1 of 1) sense_intronic-exon (ENSMUSG00000117775.1, exon 1 of 1) 1394 ENSMUSG00000117775.1 ENSMUSG00000117775 ENSMUST00000237947 Gm50462 sense_intronic Interval_131726 chr5 139522241 139522446 + 0 NA Intergenic Intergenic -1406 ENSMUSG00000106056.1 ENSMUSG00000106056 ENSMUST00000198000 4930500L23Rik lincRNA Interval_98487 chr2 152739354 152739934 + 0 NA Intergenic Intergenic 3393 ENSMUSG00000042745.9 ENSMUSG00000042745 ENSMUST00000109824 Id1 protein_coding Interval_21641 chr11 3392488 3393372 + 0 NA exon (ENSMUSG00000020451.17, exon 2 of 16) protein_coding-exon (ENSMUSG00000020451.17, exon 2 of 16) -38019 ENSMUSG00000087055.1 ENSMUSG00000087055 ENSMUST00000142322 Gm11948 sense_intronic Interval_173245 chrX 75130450 75131436 + 0 NA promoter-TSS (ENSMUSG00000031402.12) protein_coding-promoter-TSS (ENSMUSG00000031402.12) 43 ENSMUSG00000031402.12 ENSMUSG00000031402 ENSMUST00000127023 Mpp1 protein_coding Interval_43928 chr13 38109068 38109386 + 0 NA Intergenic Intergenic 23025 ENSMUSG00000098481.1 ENSMUSG00000098481 ENSMUST00000184583 Gm27387 miRNA Interval_114942 chr4 87403846 87404346 + 0 NA Intergenic Intergenic -28176 ENSMUSG00000093065.1 ENSMUSG00000093065 ENSMUST00000175324 Gm23154 miRNA Interval_136767 chr6 59353891 59354711 + 0 NA exon (ENSMUSG00000045441.5, exon 2 of 2) protein_coding-exon (ENSMUSG00000045441.5, exon 2 of 2) 71993 ENSMUSG00000045441.5 ENSMUSG00000045441 ENSMUST00000051065 Gprin3 protein_coding Interval_71042 chr17 17388571 17389468 + 0 NA TTS (ENSMUSG00000097379.2) antisense-TTS (ENSMUSG00000097379.2) 14447 ENSMUSG00000116564.1 ENSMUSG00000116564 ENSMUST00000232199 Riok2 protein_coding Interval_171145 chr9 114751737 114753490 + 0 NA Intergenic Intergenic 21497 ENSMUSG00000032434.9 ENSMUSG00000032434 ENSMUST00000035007 Cmtm6 protein_coding Interval_150031 chr7 105210487 105211165 + 0 NA Intergenic Intergenic -5671 ENSMUSG00000048425.3 ENSMUSG00000048425 ENSMUST00000050157 Olfr686 protein_coding Interval_63029 chr15 98724075 98724805 + 0 NA TTS (ENSMUSG00000003355.7) protein_coding-TTS (ENSMUSG00000003355.7) 3712 ENSMUSG00000003355.7 ENSMUSG00000003355 ENSMUST00000229562 Fkbp11 protein_coding Interval_103277 chr3 37760741 37761304 + 0 NA promoter-TSS (ENSMUSG00000106441.1) lincRNA-promoter-TSS (ENSMUSG00000106441.1) -15 ENSMUSG00000106441.1 ENSMUSG00000106441 ENSMUST00000196670 Gm42921 lincRNA Interval_8638 chr1 145557508 145558133 + 0 NA Intergenic Intergenic -231129 ENSMUSG00000103055.1 ENSMUSG00000103055 ENSMUST00000194549 Gm38269 TEC Interval_122021 chr5 14039140 14039592 + 0 NA intron (ENSMUSG00000063531.7, intron 1 of 15) protein_coding-intron (ENSMUSG00000063531.7, intron 1 of 16) 11472 ENSMUSG00000105528.1 ENSMUSG00000105528 ENSMUST00000197239 Gm43519 TEC Interval_98309 chr2 150923844 150924041 + 0 NA intron (ENSMUSG00000027454.10, intron 4 of 4) protein_coding-intron (ENSMUSG00000027454.10, intron 4 of 6) -9591 ENSMUSG00000082341.1 ENSMUSG00000082341 ENSMUST00000121686 Gm14143 processed_pseudogene Interval_100584 chr2 170266160 170267165 + 0 NA Intergenic Intergenic -18373 ENSMUSG00000084013.1 ENSMUSG00000084013 ENSMUST00000118388 Gm14270 processed_pseudogene Interval_80692 chr18 46352091 46352872 + 0 NA Intergenic Intergenic 4486 ENSMUSG00000118282.1 ENSMUSG00000118282 ENSMUST00000237083 Gm4840 processed_pseudogene Interval_149990 chr7 104236426 104237632 + 0 NA Intergenic Intergenic -7428 ENSMUSG00000056144.14 ENSMUSG00000056144 ENSMUST00000106848 Trim34a protein_coding Interval_22207 chr11 7161007 7162339 + 0 NA intron (ENSMUSG00000020431.5, intron 3 of 7) protein_coding-intron (ENSMUSG00000020431.5, intron 16 of 19) 1791 ENSMUSG00000020431.5 ENSMUSG00000020431 ENSMUST00000135398 Adcy1 protein_coding Interval_67643 chr16 55154975 55155209 + 0 NA Intergenic Intergenic 142894 ENSMUSG00000064310.10 ENSMUSG00000064310 ENSMUST00000143914 Zpld1 protein_coding Interval_12179 chr1 190592239 190592454 + 0 NA Intergenic Intergenic -1980 ENSMUSG00000103963.1 ENSMUSG00000103963 ENSMUST00000191893 Gm30932 lincRNA Interval_98439 chr2 152363472 152364316 + 0 NA intron (ENSMUSG00000068062.3, intron 2 of 4) processed_transcript-intron (ENSMUSG00000068062.3, intron 2 of 4) 10279 ENSMUSG00000081434.3 ENSMUSG00000081434 ENSMUST00000121456 Gm14165 processed_pseudogene Interval_71102 chr17 18043855 18044228 + 0 NA Intergenic Intergenic -5383 ENSMUSG00000094396.3 ENSMUSG00000094396 ENSMUST00000233320 Vmn2r124 protein_coding Interval_29712 chr11 86317008 86317832 + 0 NA intron (ENSMUSG00000034297.14, intron 9 of 29) protein_coding-intron (ENSMUSG00000034297.14, intron 9 of 29) 14763 ENSMUSG00000034297.14 ENSMUSG00000034297 ENSMUST00000144983 Med13 protein_coding Interval_174038 chrX 131132405 131133184 + 0 NA Intergenic Intergenic 40954 ENSMUSG00000083999.1 ENSMUSG00000083999 ENSMUST00000118716 Gm7790 processed_pseudogene Interval_170349 chr9 107335927 107336140 + 0 NA exon (ENSMUSG00000032579.14, exon 4 of 4) protein_coding-exon (ENSMUSG00000032579.14, exon 4 of 4) -5233 ENSMUSG00000032579.14 ENSMUSG00000032579 ENSMUST00000128895 Hemk1 protein_coding Interval_66584 chr16 35404428 35405569 + 0 NA intron (ENSMUSG00000022844.8, intron 4 of 5) protein_coding-intron (ENSMUSG00000022844.8, intron 14 of 16) 8177 ENSMUSG00000022844.8 ENSMUSG00000022844 ENSMUST00000231595 Pdia5 protein_coding Interval_132960 chr5 148958519 148960699 + 0 NA promoter-TSS (ENSMUSG00000108207.2) processed_transcript-promoter-TSS (ENSMUSG00000108207.2) 331 ENSMUSG00000087272.1 ENSMUSG00000087272 ENSMUST00000135240 Gm15409 lincRNA Interval_146823 chr7 52466806 52467377 + 0 NA Intergenic Intergenic 55638 ENSMUSG00000109099.1 ENSMUSG00000109099 ENSMUST00000208144 Gm20074 processed_pseudogene Interval_132105 chr5 142787338 142788646 + 0 NA TTS (ENSMUSG00000039477.16) protein_coding-TTS (ENSMUSG00000039477.16) -21970 ENSMUSG00000039477.16 ENSMUSG00000039477 ENSMUST00000198181 Tnrc18 protein_coding Interval_125752 chr5 73892255 73893506 + 0 NA Intergenic Intergenic -20016 ENSMUSG00000107027.1 ENSMUSG00000107027 ENSMUST00000202487 1700019F05Rik lincRNA Interval_58476 chr15 34972221 34972420 + 0 NA intron (ENSMUSG00000022329.15, intron 8 of 10) protein_coding-intron (ENSMUSG00000022329.15, intron 8 of 10) -12083 ENSMUSG00000022329.15 ENSMUSG00000022329 ENSMUST00000138841 Stk3 protein_coding Interval_41555 chr12 116253965 116254164 + 0 NA TTS (ENSMUSG00000042050.8) protein_coding-TTS (ENSMUSG00000042050.8) 8922 ENSMUSG00000042050.8 ENSMUSG00000042050 ENSMUST00000221029 Wdr60 protein_coding Interval_58726 chr15 37383761 37384025 + 0 NA intron (ENSMUSG00000051359.15, intron 2 of 2) protein_coding-intron (ENSMUSG00000051359.15, intron 5 of 6) -12446 ENSMUSG00000080408.1 ENSMUSG00000080408 ENSMUST00000116758 Gm23654 miRNA Interval_109292 chr3 138722163 138722980 + 0 NA intron (ENSMUSG00000105838.1, intron 1 of 3) lincRNA-intron (ENSMUSG00000105838.1, intron 1 of 3) 4413 ENSMUSG00000105838.1 ENSMUSG00000105838 ENSMUST00000197761 4930425O10Rik lincRNA Interval_148858 chr7 89341554 89342474 + 0 NA intron (ENSMUSG00000109327.1, intron 1 of 2) protein_coding-intron (ENSMUSG00000039428.11, intron 1 of 8) 3644 ENSMUSG00000109327.1 ENSMUSG00000109327 ENSMUST00000207056 Gm44995 antisense Interval_66641 chr16 35808881 35809390 + 0 NA promoter-TSS (ENSMUSG00000097914.1) antisense-promoter-TSS (ENSMUSG00000097914.1) -189 ENSMUSG00000097914.1 ENSMUSG00000097914 ENSMUST00000180485 Gm26838 antisense Interval_136695 chr6 57893019 57893214 + 0 NA Intergenic Intergenic 14912 ENSMUSG00000115091.1 ENSMUSG00000115091 ENSMUST00000228322 Vmn1r22 protein_coding Interval_66609 chr16 35613565 35614469 + 0 NA intron (ENSMUSG00000052133.16, intron 1 of 5) protein_coding-intron (ENSMUSG00000052133.16, intron 1 of 21) -40461 ENSMUSG00000052192.5 ENSMUSG00000052192 ENSMUST00000143451 Gm5963 processed_pseudogene Interval_167403 chr9 68759157 68759996 + 0 NA intron (ENSMUSG00000032238.17, intron 1 of 5) protein_coding-intron (ENSMUSG00000032238.17, intron 1 of 10) 105685 ENSMUSG00000032238.17 ENSMUSG00000032238 ENSMUST00000113624 Rora protein_coding Interval_124162 chr5 38755093 38755458 + 0 NA intron (ENSMUSG00000039315.15, intron 8 of 18) protein_coding-intron (ENSMUSG00000039315.15, intron 8 of 18) 19291 ENSMUSG00000079528.9 ENSMUSG00000079528 ENSMUST00000177682 Clnkos antisense Interval_103543 chr3 48330325 48330498 + 0 NA Intergenic Intergenic 252070 ENSMUSG00000104110.1 ENSMUSG00000104110 ENSMUST00000192186 Gm37295 TEC Interval_120360 chr4 148091292 148093134 + 0 NA Intergenic Intergenic -7437 ENSMUSG00000029007.8 ENSMUSG00000029007 ENSMUST00000137393 Agtrap protein_coding Interval_174446 chrX 152368114 152369554 + 0 NA promoter-TSS (ENSMUSG00000056679.13) protein_coding-promoter-TSS (ENSMUSG00000056679.13) -130 ENSMUSG00000056679.13 ENSMUSG00000056679 ENSMUST00000137840 Gpr173 protein_coding Interval_24765 chr11 37031451 37032504 + 0 NA intron (ENSMUSG00000049336.16, intron 2 of 3) protein_coding-intron (ENSMUSG00000049336.16, intron 2 of 30) -87811 ENSMUSG00000049336.16 ENSMUSG00000049336 ENSMUST00000157030 Tenm2 protein_coding Interval_76234 chr17 78286071 78286444 + 0 NA intron (ENSMUSG00000024074.8, intron 2 of 5) protein_coding-intron (ENSMUSG00000024074.8, intron 4 of 16) -16404 ENSMUSG00000092979.1 ENSMUSG00000092979 ENSMUST00000175238 Gm25069 miRNA Interval_104023 chr3 57469844 57471589 + 0 NA intron (ENSMUSG00000027803.14, intron 4 of 6) protein_coding-intron (ENSMUSG00000027803.14, intron 4 of 6) 45402 ENSMUSG00000027801.7 ENSMUSG00000027801 ENSMUST00000029377 Tm4sf4 protein_coding Interval_11046 chr1 178850155 178851176 + 0 NA intron (ENSMUSG00000026494.12, intron 5 of 14) protein_coding-intron (ENSMUSG00000026494.12, intron 2 of 11) 66949 ENSMUSG00000089713.1 ENSMUSG00000089713 ENSMUST00000162545 Gm16564 antisense Interval_132057 chr5 142521427 142521954 + 0 NA intron (ENSMUSG00000029576.17, intron 2 of 13) protein_coding-intron (ENSMUSG00000029576.17, intron 2 of 14) 8386 ENSMUSG00000074817.2 ENSMUSG00000074817 ENSMUST00000099400 Papolb protein_coding Interval_162585 chr9 5197343 5197853 + 0 NA Intergenic Intergenic 86199 ENSMUSG00000084690.1 ENSMUSG00000084690 ENSMUST00000122741 Gm24896 snoRNA Interval_69248 chr16 91659774 91660438 + 0 NA exon (ENSMUSG00000022961.18, exon 3 of 5) protein_coding-exon (ENSMUSG00000022961.18, exon 3 of 5) -12157 ENSMUSG00000022961.18 ENSMUSG00000022961 ENSMUST00000151503 Son protein_coding Interval_30331 chr11 93675274 93675644 + 0 NA Intergenic Intergenic -19623 ENSMUSG00000080872.1 ENSMUSG00000080872 ENSMUST00000122414 Gm11506 processed_pseudogene Interval_50632 chr14 16885957 16886276 + 0 NA Intergenic Intergenic -60543 ENSMUSG00000114890.1 ENSMUSG00000114890 ENSMUST00000223705 Tpi-rs9 processed_pseudogene Interval_104216 chr3 60797312 60798227 + 0 NA Intergenic Intergenic 9408 ENSMUSG00000103587.1 ENSMUSG00000103587 ENSMUST00000194030 Gm38326 lincRNA Interval_160711 chr8 111748596 111749481 + 0 NA Intergenic Intergenic -16902 ENSMUSG00000031955.10 ENSMUSG00000031955 ENSMUST00000212147 Bcar1 protein_coding Interval_69080 chr16 90503102 90503717 + 0 NA Intergenic Intergenic 47200 ENSMUSG00000116753.1 ENSMUSG00000116753 ENSMUST00000232652 Gm36001 lincRNA Interval_156288 chr8 46995819 46996630 + 0 NA intron (ENSMUSG00000109888.1, intron 3 of 3) protein_coding-intron (ENSMUSG00000038173.15, intron 1 of 7) 17953 ENSMUSG00000109888.1 ENSMUSG00000109888 ENSMUST00000210828 Gm45600 antisense Interval_114531 chr4 82316513 82316792 + 0 NA intron (ENSMUSG00000008575.17, intron 8 of 9) protein_coding-intron (ENSMUSG00000008575.17, intron 8 of 9) -122758 ENSMUSG00000084595.1 ENSMUSG00000084595 ENSMUST00000122646 n-R5s188 rRNA Interval_67903 chr16 59177530 59179146 + 0 NA Intergenic Intergenic -7884 ENSMUSG00000096695.3 ENSMUSG00000096695 ENSMUST00000077027 Olfr196 protein_coding Interval_121919 chr5 9662898 9663165 + 0 NA intron (ENSMUSG00000003974.6, intron 1 of 5) protein_coding-intron (ENSMUSG00000003974.6, intron 1 of 5) -60424 ENSMUSG00000106637.1 ENSMUSG00000106637 ENSMUST00000199761 Gm42455 TEC Interval_102693 chr3 30213494 30213933 + 0 NA intron (ENSMUSG00000027684.16, intron 2 of 2) protein_coding-intron (ENSMUSG00000027684.16, intron 2 of 11) 13981 ENSMUSG00000102460.1 ENSMUSG00000102460 ENSMUST00000192320 Gm38197 TEC Interval_47369 chr13 82091928 82092863 + 0 NA intron (ENSMUSG00000114461.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000114461.1, intron 1 of 2) 2638 ENSMUSG00000114461.1 ENSMUSG00000114461 ENSMUST00000224753 Gm48155 lincRNA Interval_14090 chr10 26803887 26804796 + 0 NA intron (ENSMUSG00000039031.16, intron 1 of 14) protein_coding-intron (ENSMUSG00000039031.16, intron 1 of 14) 31794 ENSMUSG00000039031.16 ENSMUSG00000039031 ENSMUST00000142284 Arhgap18 protein_coding Interval_78569 chr18 14803185 14803548 + 0 NA intron (ENSMUSG00000054321.7, intron 3 of 14) protein_coding-intron (ENSMUSG00000054321.7, intron 3 of 14) 20121 ENSMUSG00000054321.7 ENSMUSG00000054321 ENSMUST00000169862 Taf4b protein_coding Interval_112938 chr4 46205670 46206437 + 0 NA Intergenic Intergenic -9749 ENSMUSG00000028329.13 ENSMUSG00000028329 ENSMUST00000130051 Xpa protein_coding Interval_62746 chr15 96601840 96602479 + 0 NA intron (ENSMUSG00000023169.15, intron 4 of 11) protein_coding-intron (ENSMUSG00000023169.15, intron 4 of 15) 40054 ENSMUSG00000023169.15 ENSMUSG00000023169 ENSMUST00000229253 Slc38a1 protein_coding Interval_63013 chr15 98644118 98644918 + 0 NA TTS (ENSMUSG00000003352.14) protein_coding-TTS (ENSMUSG00000003352.14) 12713 ENSMUSG00000003352.14 ENSMUSG00000003352 ENSMUST00000230064 Cacnb3 protein_coding Interval_25933 chr11 52725670 52726265 + 0 NA Intergenic Intergenic -38667 ENSMUSG00000036264.9 ENSMUSG00000036264 ENSMUST00000036796 Fstl4 protein_coding Interval_70052 chr17 5014503 5015473 + 0 NA intron (ENSMUSG00000069729.14, intron 1 of 19) protein_coding-intron (ENSMUSG00000069729.14, intron 1 of 18) 20049 ENSMUSG00000069729.14 ENSMUSG00000069729 ENSMUST00000146703 Arid1b protein_coding Interval_128973 chr5 116400242 116401103 + 0 NA Intergenic Intergenic -7872 ENSMUSG00000086945.1 ENSMUSG00000086945 ENSMUST00000153818 4930562A09Rik lincRNA Interval_39766 chr12 97819595 97819917 + 0 NA Intergenic Intergenic -24627 ENSMUSG00000112661.1 ENSMUSG00000112661 ENSMUST00000220334 Gm6869 unprocessed_pseudogene Interval_132142 chr5 142932201 142932610 + 0 NA Intergenic Intergenic -27971 ENSMUSG00000029581.14 ENSMUSG00000029581 ENSMUST00000135293 Fscn1 protein_coding Interval_163263 chr9 20294912 20296212 + 0 NA Intergenic Intergenic -3079 ENSMUSG00000049028.8 ENSMUSG00000049028 ENSMUST00000053919 Olfr873 protein_coding Interval_13387 chr10 17651761 17652604 + 0 NA intron (ENSMUSG00000112629.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000112629.1, intron 1 of 2) 6331 ENSMUSG00000112629.1 ENSMUSG00000112629 ENSMUST00000219966 Gm47771 lincRNA Interval_56552 chr14 120306288 120306999 + 0 NA intron (ENSMUSG00000022139.17, intron 1 of 2) protein_coding-intron (ENSMUSG00000022139.17, intron 1 of 8) -72598 ENSMUSG00000022139.17 ENSMUSG00000022139 ENSMUST00000227153 Mbnl2 protein_coding Interval_39448 chr12 87471583 87472667 + 0 NA exon (ENSMUSG00000021039.9, exon 1 of 1) protein_coding-exon (ENSMUSG00000021039.9, exon 1 of 1) 144 ENSMUSG00000021039.9 ENSMUSG00000021039 ENSMUST00000223119 Snw1 protein_coding Interval_10151 chr1 166130275 166130684 + 0 NA promoter-TSS (ENSMUSG00000000544.14) protein_coding-promoter-TSS (ENSMUSG00000000544.14) 12 ENSMUSG00000000544.14 ENSMUSG00000000544 ENSMUST00000166860 Gpa33 protein_coding Interval_49001 chr13 106829442 106830985 + 0 NA intron (ENSMUSG00000042590.17, intron 4 of 5) protein_coding-intron (ENSMUSG00000042590.17, intron 27 of 29) 5589 ENSMUSG00000118423.1 ENSMUSG00000118423 ENSMUST00000238649 Lrrc70 transcribed_unitary_pseudogene Interval_39524 chr12 89289841 89290145 + 0 NA intron (ENSMUSG00000066392.12, intron 5 of 18) protein_coding-intron (ENSMUSG00000066392.12, intron 6 of 19) 8590 ENSMUSG00000098757.1 ENSMUSG00000098757 ENSMUST00000183500 Gm27313 miRNA Interval_125683 chr5 73218856 73220142 + 0 NA intron (ENSMUSG00000070733.13, intron 2 of 11) protein_coding-intron (ENSMUSG00000070733.13, intron 2 of 62) -6856 ENSMUSG00000090561.2 ENSMUSG00000090561 ENSMUST00000168686 Gm17207 sense_intronic Interval_36434 chr12 44547784 44548272 + 0 NA intron (ENSMUSG00000020598.16, intron 10 of 24) protein_coding-intron (ENSMUSG00000020598.16, intron 10 of 30) 74634 ENSMUSG00000112823.1 ENSMUSG00000112823 ENSMUST00000217983 Gm6125 processed_pseudogene Interval_7219 chr1 127959557 127959971 + 0 NA exon (ENSMUSG00000036086.16, exon 19 of 21) protein_coding-exon (ENSMUSG00000036086.16, exon 19 of 21) 248 ENSMUSG00000099760.1 ENSMUSG00000099760 ENSMUST00000186230 Gm28800 antisense Interval_32356 chr11 107131264 107132770 + 0 NA promoter-TSS (ENSMUSG00000040481.17) protein_coding-promoter-TSS (ENSMUSG00000040481.17) -25391 ENSMUSG00000087596.1 ENSMUSG00000087596 ENSMUST00000129501 Gm11715 antisense Interval_28375 chr11 75460289 75463257 + 0 NA promoter-TSS (ENSMUSG00000038217.13) protein_coding-promoter-TSS (ENSMUSG00000038217.13) 234 ENSMUSG00000085148.1 ENSMUSG00000085148 ENSMUST00000134345 Mir22hg processed_transcript Interval_72480 chr17 30068303 30068583 + 0 NA intron (ENSMUSG00000044477.12, intron 2 of 5) protein_coding-intron (ENSMUSG00000044477.12, intron 2 of 4) -63752 ENSMUSG00000117371.1 ENSMUSG00000117371 ENSMUST00000233996 Gm50019 bidirectional_promoter_lncRNA Interval_13711 chr10 21324978 21325614 + 0 NA intron (ENSMUSG00000112654.1, intron 1 of 3) protein_coding-intron (ENSMUSG00000019977.16, intron 4 of 17) 16761 ENSMUSG00000112654.1 ENSMUSG00000112654 ENSMUST00000218108 4930455C13Rik antisense Interval_73344 chr17 36355438 36355713 + 0 NA Intergenic Intergenic 12842 ENSMUSG00000058124.4 ENSMUSG00000058124 ENSMUST00000073546 H2-M10.3 protein_coding Interval_48959 chr13 106013911 106014117 + 0 NA intron (ENSMUSG00000114564.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000114564.1, intron 1 of 1) -28110 ENSMUSG00000114899.1 ENSMUSG00000114899 ENSMUST00000224697 Gm48214 processed_pseudogene Interval_6453 chr1 109574966 109575195 + 0 NA promoter-TSS (ENSMUSG00000100884.1) processed_pseudogene-promoter-TSS (ENSMUSG00000100884.1) 49 ENSMUSG00000100884.1 ENSMUSG00000100884 ENSMUST00000185658 Gm28281 processed_pseudogene Interval_88085 chr19 58932552 58933332 + 0 NA intron (ENSMUSG00000025092.7, intron 1 of 2) protein_coding-intron (ENSMUSG00000025092.7, intron 1 of 2) -20235 ENSMUSG00000048029.10 ENSMUSG00000048029 ENSMUST00000201123 Eno4 protein_coding Interval_100860 chr2 172960424 172960861 + 0 NA Intergenic Intergenic -20550 ENSMUSG00000008999.7 ENSMUSG00000008999 ENSMUST00000137247 Bmp7 protein_coding Interval_21098 chr10 126333707 126333982 + 0 NA Intergenic Intergenic -38131 ENSMUSG00000112482.1 ENSMUSG00000112482 ENSMUST00000218075 1700025K04Rik lincRNA Interval_91548 chr2 42809487 42809884 + 0 NA TTS (ENSMUSG00000077351.2) snoRNA-TTS (ENSMUSG00000077351.2) 650 ENSMUSG00000105844.1 ENSMUSG00000105844 ENSMUST00000198309 Gm24350 snoRNA Interval_61107 chr15 79263744 79263984 + 0 NA intron (ENSMUSG00000018126.15, intron 7 of 12) protein_coding-intron (ENSMUSG00000018126.15, intron 7 of 13) 8290 ENSMUSG00000091135.1 ENSMUSG00000091135 ENSMUST00000170221 Lgals1-ps2 transcribed_processed_pseudogene Interval_166907 chr9 63849176 63850210 + 0 NA Intergenic Intergenic -47896 ENSMUSG00000111137.1 ENSMUSG00000111137 ENSMUST00000215986 Gm2553 processed_pseudogene Interval_65426 chr16 22264855 22266701 + 0 NA exon (ENSMUSG00000022858.16, exon 1 of 2) protein_coding-exon (ENSMUSG00000022858.16, exon 1 of 2) 131 ENSMUSG00000022858.16 ENSMUSG00000022858 ENSMUST00000231312 Tra2b protein_coding Interval_40114 chr12 101632438 101632827 + 0 NA Intergenic Intergenic -13554 ENSMUSG00000090152.1 ENSMUSG00000090152 ENSMUST00000162999 Gm16285 processed_pseudogene Interval_44555 chr13 46011142 46011932 + 0 NA Intergenic Intergenic 46186 ENSMUSG00000038152.4 ENSMUSG00000038152 ENSMUST00000189843 5033430I15Rik lincRNA Interval_31504 chr11 101066474 101067417 + 0 NA Intergenic Intergenic -4607 ENSMUSG00000001751.9 ENSMUSG00000001751 ENSMUST00000138409 Naglu protein_coding Interval_167887 chr9 73529816 73530836 + 0 NA intron (ENSMUSG00000062151.13, intron 28 of 32) protein_coding-intron (ENSMUSG00000062151.13, intron 27 of 31) 23544 ENSMUSG00000103832.1 ENSMUSG00000103832 ENSMUST00000195250 Gm37611 TEC Interval_136442 chr6 54517079 54517303 + 0 NA intron (ENSMUSG00000019124.10, intron 1 of 3) protein_coding-intron (ENSMUSG00000019124.10, intron 6 of 7) -7830 ENSMUSG00000019124.10 ENSMUSG00000019124 ENSMUST00000140235 Scrn1 protein_coding Interval_174568 chrX 158600659 158601341 + 0 NA Intergenic Intergenic -97099 ENSMUSG00000084210.1 ENSMUSG00000084210 ENSMUST00000121057 Gm15168 processed_pseudogene Interval_77617 chr17 93154783 93155003 + 0 NA Intergenic Intergenic -13619 ENSMUSG00000117591.1 ENSMUSG00000117591 ENSMUST00000234088 Gm49997 processed_pseudogene Interval_79224 chr18 25886346 25886627 + 0 NA Intergenic Intergenic 47409 ENSMUSG00000117410.1 ENSMUSG00000117410 ENSMUST00000234817 Gm50304 lincRNA Interval_21575 chr10 130142434 130142683 + 0 NA intron (ENSMUSG00000108134.1, intron 1 of 1) processed_pseudogene-intron (ENSMUSG00000108134.1, intron 1 of 1) 2516 ENSMUSG00000108134.1 ENSMUSG00000108134 ENSMUST00000205012 Gm9560 processed_pseudogene Interval_62656 chr15 96001602 96002120 + 0 NA Intergenic Intergenic -7732 ENSMUSG00000115049.1 ENSMUSG00000115049 ENSMUST00000227616 Gm49172 processed_transcript Interval_142111 chr6 137201015 137201848 + 0 NA Intergenic Intergenic -54502 ENSMUSG00000107567.1 ENSMUSG00000107567 ENSMUST00000203679 4930480K02Rik TEC Interval_133531 chr6 6178070 6179537 + 0 NA intron (ENSMUSG00000015112.15, intron 3 of 17) protein_coding-intron (ENSMUSG00000015112.15, intron 3 of 17) -4852 ENSMUSG00000015112.15 ENSMUSG00000015112 ENSMUST00000177698 Slc25a13 protein_coding Interval_123132 chr5 30012597 30013724 + 0 NA promoter-TSS (ENSMUSG00000025746.11) protein_coding-promoter-TSS (ENSMUSG00000025746.11) -161 ENSMUSG00000025746.11 ENSMUSG00000025746 ENSMUST00000199765 Il6 protein_coding Interval_34124 chr11 120775828 120776490 + 0 NA Intergenic Intergenic 8026 ENSMUSG00000025158.7 ENSMUSG00000025158 ENSMUST00000026156 Rfng protein_coding Interval_111802 chr4 29813525 29814390 + 0 NA Intergenic Intergenic 323801 ENSMUSG00000082058.1 ENSMUSG00000082058 ENSMUST00000118135 Gm11923 processed_pseudogene Interval_146988 chr7 57304019 57304987 + 0 NA intron (ENSMUSG00000055026.13, intron 3 of 3) protein_coding-intron (ENSMUSG00000055026.13, intron 3 of 3) 82685 ENSMUSG00000055026.13 ENSMUSG00000055026 ENSMUST00000171965 Gabrg3 protein_coding Interval_155500 chr8 33942391 33943667 + 0 NA Intergenic Intergenic -13637 ENSMUSG00000031586.17 ENSMUSG00000031586 ENSMUST00000231942 Rbpms protein_coding Interval_139454 chr6 100286481 100288558 + 0 NA promoter-TSS (ENSMUSG00000072872.3) protein_coding-promoter-TSS (ENSMUSG00000072872.3) -771 ENSMUSG00000072872.3 ENSMUSG00000072872 ENSMUST00000205164 Rybp protein_coding Interval_61256 chr15 80287175 80287527 + 0 NA promoter-TSS (ENSMUSG00000022416.15) protein_coding-promoter-TSS (ENSMUSG00000022416.15) -23105 ENSMUSG00000051518.8 ENSMUSG00000051518 ENSMUST00000229962 Rps19bp1 protein_coding Interval_133469 chr6 5417781 5418147 + 0 NA intron (ENSMUSG00000042607.15, intron 3 of 5) protein_coding-intron (ENSMUSG00000042607.15, intron 3 of 5) 27537 ENSMUSG00000042607.15 ENSMUSG00000042607 ENSMUST00000183358 Asb4 protein_coding Interval_27549 chr11 68611146 68611818 + 0 NA Intergenic Intergenic 24461 ENSMUSG00000045915.15 ENSMUSG00000045915 ENSMUST00000102612 Ccdc42 protein_coding Interval_116422 chr4 111703013 111703528 + 0 NA Intergenic Intergenic -16793 ENSMUSG00000034401.16 ENSMUSG00000034401 ENSMUST00000132802 Spata6 protein_coding Interval_170022 chr9 103720187 103720575 + 0 NA intron (ENSMUSG00000042757.16, intron 2 of 3) protein_coding-intron (ENSMUSG00000042757.16, intron 2 of 5) 41448 ENSMUSG00000042757.16 ENSMUSG00000042757 ENSMUST00000186455 Tmem108 protein_coding Interval_160208 chr8 107123197 107124743 + 0 NA Intergenic Intergenic 4860 ENSMUSG00000102271.1 ENSMUSG00000102271 ENSMUST00000193420 C630050I24Rik TEC Interval_10658 chr1 172510599 172510946 + 0 NA Intergenic Intergenic -2477 ENSMUSG00000104351.1 ENSMUSG00000104351 ENSMUST00000195877 Gm37125 TEC Interval_38698 chr12 81167169 81168777 + 0 NA intron (ENSMUSG00000021136.13, intron 8 of 11) protein_coding-intron (ENSMUSG00000021136.13, intron 8 of 12) 1822 ENSMUSG00000092673.1 ENSMUSG00000092673 ENSMUST00000174932 Mir3067 miRNA Interval_10999 chr1 177935615 177936058 + 0 NA intron (ENSMUSG00000102483.2, intron 14 of 21) protein_coding-intron (ENSMUSG00000102483.2, intron 14 of 21) -55600 ENSMUSG00000091476.8 ENSMUSG00000091476 ENSMUST00000239155 Catspere2 protein_coding Interval_16317 chr10 62149941 62150475 + 0 NA Intergenic Intergenic -15502 ENSMUSG00000020083.13 ENSMUSG00000020083 ENSMUST00000138450 Fam241b protein_coding Interval_21331 chr10 128024975 128026214 + 0 NA intron (ENSMUSG00000025395.14, intron 9 of 12) protein_coding-intron (ENSMUSG00000025395.14, intron 9 of 12) -10041 ENSMUSG00000061315.14 ENSMUSG00000061315 ENSMUST00000092048 Naca protein_coding Interval_174107 chrX 135035738 135036565 + 0 NA promoter-TSS (ENSMUSG00000089759.7) processed_transcript-promoter-TSS (ENSMUSG00000089759.7) 451 ENSMUSG00000089759.7 ENSMUSG00000089759 ENSMUST00000155136 3632454L22Rik processed_transcript Interval_127078 chr5 100126425 100126628 + 0 NA intron (ENSMUSG00000050640.16, intron 1 of 5) protein_coding-intron (ENSMUSG00000050640.16, intron 1 of 7) 33044 ENSMUSG00000050640.16 ENSMUSG00000050640 ENSMUST00000139520 Tmem150c protein_coding Interval_19523 chr10 102017185 102017932 + 0 NA intron (ENSMUSG00000019888.16, intron 4 of 8) protein_coding-intron (ENSMUSG00000019888.16, intron 3 of 5) -141347 ENSMUSG00000019888.16 ENSMUSG00000019888 ENSMUST00000120748 Mgat4c protein_coding Interval_131325 chr5 136471111 136471998 + 0 NA intron (ENSMUSG00000029705.17, intron 1 of 20) protein_coding-intron (ENSMUSG00000029705.17, intron 2 of 23) 64923 ENSMUSG00000104369.1 ENSMUSG00000104369 ENSMUST00000192800 Gm38082 TEC Interval_149179 chr7 95999122 95999607 + 0 NA Intergenic Intergenic -85978 ENSMUSG00000108628.1 ENSMUSG00000108628 ENSMUST00000205327 Gm5037 processed_pseudogene Interval_85278 chr19 24307769 24308840 + 0 NA intron (ENSMUSG00000024867.14, intron 12 of 13) protein_coding-intron (ENSMUSG00000024867.14, intron 13 of 14) 18588 ENSMUSG00000082107.1 ENSMUSG00000082107 ENSMUST00000118970 Gm16216 processed_pseudogene Interval_107354 chr3 106498864 106499057 + 0 NA intron (ENSMUSG00000027901.12, intron 9 of 11) protein_coding-intron (ENSMUSG00000027901.12, intron 9 of 11) 5785 ENSMUSG00000027901.12 ENSMUSG00000027901 ENSMUST00000195305 Dennd2d protein_coding Interval_14683 chr10 38973883 38974114 + 0 NA intron (ENSMUSG00000019846.11, intron 1 of 9) protein_coding-intron (ENSMUSG00000019846.11, intron 1 of 37) 45709 ENSMUSG00000111431.1 ENSMUSG00000111431 ENSMUST00000213395 Gm17779 processed_pseudogene Interval_159397 chr8 94307800 94308305 + 0 NA intron (ENSMUSG00000032939.14, intron 18 of 22) protein_coding-intron (ENSMUSG00000032939.14, intron 17 of 21) 12045 ENSMUSG00000032939.14 ENSMUSG00000032939 ENSMUST00000212984 Nup93 protein_coding Interval_6258 chr1 104903980 104904355 + 0 NA intron (ENSMUSG00000050840.8, intron 1 of 11) protein_coding-intron (ENSMUSG00000050840.8, intron 1 of 11) -2356 ENSMUSG00000103060.1 ENSMUSG00000103060 ENSMUST00000194551 Gm36969 TEC Interval_88296 chr2 3456395 3456961 + 0 NA TTS (ENSMUSG00000026646.16) protein_coding-TTS (ENSMUSG00000026646.16) 3729 ENSMUSG00000026648.18 ENSMUSG00000026648 ENSMUST00000152468 Dclre1c protein_coding Interval_101921 chr3 11387739 11388168 + 0 NA Intergenic Intergenic 233616 ENSMUSG00000095289.1 ENSMUSG00000095289 ENSMUST00000175281 Gm22547 miRNA Interval_13518 chr10 19009246 19009542 + 0 NA promoter-TSS (ENSMUSG00000019850.11) protein_coding-promoter-TSS (ENSMUSG00000019850.11) -549 ENSMUSG00000019850.11 ENSMUSG00000019850 ENSMUST00000146388 Tnfaip3 protein_coding Interval_28133 chr11 73060624 73061461 + 0 NA intron (ENSMUSG00000020783.14, intron 3 of 12) protein_coding-intron (ENSMUSG00000020783.14, intron 3 of 12) 13169 ENSMUSG00000020783.14 ENSMUSG00000020783 ENSMUST00000151823 Ncbp3 protein_coding Interval_34193 chr11 121197431 121197645 + 0 NA intron (ENSMUSG00000025169.6, intron 4 of 8) protein_coding-intron (ENSMUSG00000025169.6, intron 4 of 8) 7173 ENSMUSG00000025169.6 ENSMUSG00000025169 ENSMUST00000026169 Ogfod3 protein_coding Interval_105106 chr3 81288665 81289154 + 0 NA Intergenic Intergenic 116663 ENSMUSG00000102223.1 ENSMUSG00000102223 ENSMUST00000193327 Gm37300 processed_pseudogene Interval_88800 chr2 11171887 11172826 + 0 NA promoter-TSS (ENSMUSG00000026778.13) protein_coding-promoter-TSS (ENSMUSG00000026778.13) -8656 ENSMUSG00000103774.1 ENSMUSG00000103774 ENSMUST00000195226 Gm36932 TEC Interval_125060 chr5 64174619 64175557 + 0 NA TTS (ENSMUSG00000029174.18) protein_coding-TTS (ENSMUSG00000029174.18) 15899 ENSMUSG00000083435.2 ENSMUSG00000083435 ENSMUST00000119516 Gm15824 processed_pseudogene Interval_71732 chr17 25744382 25744921 + 0 NA exon (ENSMUSG00000041062.7, exon 10 of 16) protein_coding-exon (ENSMUSG00000041062.7, exon 10 of 16) 2228 ENSMUSG00000076274.1 ENSMUSG00000076274 ENSMUST00000102319 Gm25083 miRNA Interval_107965 chr3 117780558 117781079 + 0 NA TTS (ENSMUSG00000028007.13) protein_coding-TTS (ENSMUSG00000028007.13) 65890 ENSMUSG00000028007.13 ENSMUSG00000028007 ENSMUST00000196421 Snx7 protein_coding Interval_149175 chr7 95958133 95959179 + 0 NA Intergenic Intergenic -45270 ENSMUSG00000108628.1 ENSMUSG00000108628 ENSMUST00000205327 Gm5037 processed_pseudogene Interval_81681 chr18 63385969 63387459 + 0 NA promoter-TSS (ENSMUSG00000041482.17) protein_coding-promoter-TSS (ENSMUSG00000041482.17) -445 ENSMUSG00000041482.17 ENSMUSG00000041482 ENSMUST00000182177 Piezo2 protein_coding Interval_28815 chr11 78490573 78491264 + 0 NA TTS (ENSMUSG00000050132.13) protein_coding-TTS (ENSMUSG00000050132.13) -3623 ENSMUSG00000050132.13 ENSMUSG00000050132 ENSMUST00000130955 Sarm1 protein_coding Interval_45447 chr13 55217568 55218041 + 0 NA intron (ENSMUSG00000021488.8, intron 2 of 20) protein_coding-intron (ENSMUSG00000021488.8, intron 2 of 22) 5734 ENSMUSG00000021488.8 ENSMUSG00000021488 ENSMUST00000225405 Nsd1 protein_coding Interval_89487 chr2 20967724 20970058 + 0 NA promoter-TSS (ENSMUSG00000036591.16) protein_coding-promoter-TSS (ENSMUSG00000036591.16) -163 ENSMUSG00000075514.4 ENSMUSG00000075514 ENSMUST00000126967 Gm13375 antisense Interval_116709 chr4 116766218 116767308 + 0 NA intron (ENSMUSG00000033985.17, intron 4 of 10) protein_coding-intron (ENSMUSG00000033985.17, intron 3 of 10) -5000 ENSMUSG00000033985.17 ENSMUSG00000033985 ENSMUST00000142529 Tesk2 protein_coding Interval_135702 chr6 43674164 43674404 + 0 NA Intergenic Intergenic -48318 ENSMUSG00000029735.17 ENSMUSG00000029735 ENSMUST00000114643 Tpk1 protein_coding Interval_106053 chr3 91994812 91995235 + 0 NA Intergenic Intergenic 15842 ENSMUSG00000077085.1 ENSMUSG00000077085 ENSMUST00000103897 Gm23697 miRNA Interval_140292 chr6 116200523 116200995 + 0 NA intron (ENSMUSG00000108030.1, intron 3 of 3) bidirectional_promoter_lncRNA-intron (ENSMUSG00000108030.1, intron 3 of 3) -4901 ENSMUSG00000082474.3 ENSMUSG00000082474 ENSMUST00000118191 Gm8213 processed_pseudogene Interval_132746 chr5 147552073 147552616 + 0 NA Intergenic Intergenic 94463 ENSMUSG00000029648.13 ENSMUSG00000029648 ENSMUST00000031652 Flt1 protein_coding Interval_59346 chr15 51801235 51802856 + 0 NA intron (ENSMUSG00000022312.11, intron 2 of 2) protein_coding-intron (ENSMUSG00000022312.11, intron 2 of 7) 34212 ENSMUSG00000022312.11 ENSMUSG00000022312 ENSMUST00000228583 Eif3h protein_coding Interval_15600 chr10 52245129 52246936 + 0 NA intron (ENSMUSG00000019891.15, intron 1 of 9) protein_coding-intron (ENSMUSG00000019891.15, intron 1 of 10) 12395 ENSMUSG00000019891.15 ENSMUSG00000019891 ENSMUST00000218582 Dcbld1 protein_coding Interval_154078 chr8 12517811 12518412 + 0 NA Intergenic Intergenic 15212 ENSMUSG00000109582.1 ENSMUSG00000109582 ENSMUST00000211062 4933439N14Rik lincRNA Interval_53571 chr14 59440322 59441676 + 0 NA promoter-TSS (ENSMUSG00000021981.10) protein_coding-promoter-TSS (ENSMUSG00000021981.10) 18 ENSMUSG00000021981.10 ENSMUSG00000021981 ENSMUST00000224893 Cab39l protein_coding Interval_165918 chr9 54657307 54657988 + 0 NA intron (ENSMUSG00000032281.11, intron 1 of 3) protein_coding-intron (ENSMUSG00000032281.11, intron 1 of 13) -14489 ENSMUSG00000032281.11 ENSMUSG00000032281 ENSMUST00000132914 Acsbg1 protein_coding Interval_97807 chr2 144194866 144196091 + 0 NA intron (ENSMUSG00000074758.10, intron 2 of 2) lincRNA-intron (ENSMUSG00000074758.10, intron 2 of 2) -4427 ENSMUSG00000074758.10 ENSMUSG00000074758 ENSMUST00000209482 Gm5535 lincRNA Interval_104395 chr3 65197963 65198152 + 0 NA intron (ENSMUSG00000027827.17, intron 2 of 14) protein_coding-intron (ENSMUSG00000027827.17, intron 1 of 13) 104628 ENSMUSG00000104093.1 ENSMUSG00000104093 ENSMUST00000195489 A330015K06Rik antisense Interval_135007 chr6 34511470 34511849 + 0 NA Intergenic Intergenic -21894 ENSMUSG00000085187.1 ENSMUSG00000085187 ENSMUST00000125185 Gm13860 lincRNA Interval_112661 chr4 43917764 43918042 + 0 NA intron (ENSMUSG00000028476.13, intron 9 of 21) protein_coding-intron (ENSMUSG00000028476.13, intron 9 of 20) 12825 ENSMUSG00000099252.1 ENSMUSG00000099252 ENSMUST00000183559 Gm27265 misc_RNA Interval_49243 chr13 109775012 109779111 + 0 NA intron (ENSMUSG00000021699.17, intron 6 of 15) protein_coding-intron (ENSMUSG00000021699.17, intron 5 of 14) -126748 ENSMUSG00000084651.1 ENSMUSG00000084651 ENSMUST00000122702 Mir1904 miRNA Interval_169102 chr9 92520137 92520511 + 0 NA Intergenic Intergenic 7384 ENSMUSG00000077400.1 ENSMUSG00000077400 ENSMUST00000104212 Gm25417 snoRNA Interval_166345 chr9 58473142 58473600 + 0 NA Intergenic Intergenic -15591 ENSMUSG00000066607.5 ENSMUSG00000066607 ENSMUST00000216294 Insyn1 protein_coding Interval_170593 chr9 109119504 109119970 + 0 NA exon (ENSMUSG00000053646.13, exon 38 of 38) protein_coding-exon (ENSMUSG00000053646.13, exon 38 of 38) 14236 ENSMUSG00000053646.13 ENSMUSG00000053646 ENSMUST00000194734 Plxnb1 protein_coding Interval_8183 chr1 136315971 136316790 + 0 NA intron (ENSMUSG00000041570.14, intron 2 of 17) protein_coding-intron (ENSMUSG00000041570.14, intron 2 of 18) -34630 ENSMUSG00000041570.14 ENSMUSG00000041570 ENSMUST00000194730 Camsap2 protein_coding Interval_169724 chr9 100700239 100700780 + 0 NA intron (ENSMUSG00000037286.15, intron 2 of 6) protein_coding-intron (ENSMUSG00000037286.15, intron 1 of 32) -2704 ENSMUSG00000104272.1 ENSMUSG00000104272 ENSMUST00000195122 Gm38297 TEC Interval_73124 chr17 34940991 34942038 + 0 NA Intergenic Intergenic 9503 ENSMUSG00000093009.1 ENSMUSG00000093009 ENSMUST00000175268 Snord52 snoRNA Interval_132724 chr5 147408607 147409460 + 0 NA promoter-TSS (ENSMUSG00000057157.3) processed_pseudogene-promoter-TSS (ENSMUSG00000057157.3) 51 ENSMUSG00000057157.3 ENSMUSG00000057157 ENSMUST00000078052 Gm6054 processed_pseudogene Interval_66778 chr16 37539264 37540577 + 0 NA promoter-TSS (ENSMUSG00000022827.14) protein_coding-promoter-TSS (ENSMUSG00000022827.14) -144 ENSMUSG00000022828.10 ENSMUSG00000022828 ENSMUST00000130350 Gtf2e1 protein_coding Interval_110531 chr4 3636703 3637059 + 0 NA Intergenic Intergenic 17692 ENSMUSG00000088790.1 ENSMUSG00000088790 ENSMUST00000158165 Gm22541 snoRNA Interval_163155 chr9 15937610 15938634 + 0 NA exon (ENSMUSG00000074505.6, exon 21 of 25) protein_coding-exon (ENSMUSG00000074505.6, exon 21 of 25) -63566 ENSMUSG00000050901.6 ENSMUSG00000050901 ENSMUST00000057920 Mtnr1b protein_coding Interval_127722 chr5 107079082 107079355 + 0 NA Intergenic Intergenic 30382 ENSMUSG00000106554.1 ENSMUSG00000106554 ENSMUST00000199486 Gm33474 lincRNA Interval_42543 chr13 15025173 15025489 + 0 NA Intergenic Intergenic 82187 ENSMUSG00000114176.1 ENSMUSG00000114176 ENSMUST00000221755 Gm48329 processed_pseudogene Interval_101322 chr2 180441248 180441476 + 0 NA Intergenic Intergenic -14972 ENSMUSG00000038963.15 ENSMUSG00000038963 ENSMUST00000128367 Slco4a1 protein_coding Interval_6178 chr1 99709921 99710182 + 0 NA Intergenic Intergenic -69810 ENSMUSG00000099453.1 ENSMUSG00000099453 ENSMUST00000191164 Gm18248 processed_pseudogene Interval_163185 chr9 17496881 17497078 + 0 NA Intergenic Intergenic 5730 ENSMUSG00000111405.1 ENSMUSG00000111405 ENSMUST00000214774 Gm2594 processed_pseudogene Interval_144541 chr7 25793069 25794046 + 0 NA promoter-TSS (ENSMUSG00000108767.1) processed_pseudogene-promoter-TSS (ENSMUSG00000108767.1) -714 ENSMUSG00000108767.1 ENSMUSG00000108767 ENSMUST00000205306 Gm29763 processed_pseudogene Interval_104637 chr3 69013371 69013893 + 0 NA intron (ENSMUSG00000034349.14, intron 3 of 7) protein_coding-intron (ENSMUSG00000034349.14, intron 5 of 23) 3730 ENSMUSG00000065606.1 ENSMUSG00000065606 ENSMUST00000083672 Mir16-2 miRNA Interval_118085 chr4 128878943 128879813 + 0 NA Intergenic Intergenic -4202 ENSMUSG00000041000.8 ENSMUSG00000041000 ENSMUST00000035667 Trim62 protein_coding Interval_84540 chr19 12500869 12503256 + 0 NA promoter-TSS (ENSMUSG00000039982.8) protein_coding-promoter-TSS (ENSMUSG00000039982.8) -608 ENSMUSG00000039982.8 ENSMUSG00000039982 ENSMUST00000045521 Dtx4 protein_coding Interval_61183 chr15 79823690 79825863 + 0 NA exon (ENSMUSG00000089715.12, exon 5 of 5) protein_coding-exon (ENSMUSG00000089715.12, exon 5 of 5) 9173 ENSMUSG00000089715.12 ENSMUSG00000089715 ENSMUST00000129614 Cbx6 protein_coding Interval_124112 chr5 38428439 38428752 + 0 NA intron (ENSMUSG00000005107.13, intron 7 of 13) protein_coding-intron (ENSMUSG00000005107.13, intron 6 of 10) 51587 ENSMUSG00000005107.13 ENSMUSG00000005107 ENSMUST00000156076 Slc2a9 protein_coding Interval_40081 chr12 101054404 101054758 + 0 NA intron (ENSMUSG00000041846.15, intron 6 of 14) protein_coding-intron (ENSMUSG00000041846.15, intron 6 of 14) -11036 ENSMUSG00000041846.15 ENSMUSG00000041846 ENSMUST00000222302 Ppp4r3a protein_coding Interval_16649 chr10 66816666 66817192 + 0 NA intron (ENSMUSG00000112425.1, intron 2 of 2) lincRNA-intron (ENSMUSG00000112425.1, intron 2 of 2) 7089 ENSMUSG00000112425.1 ENSMUSG00000112425 ENSMUST00000220426 Gm47896 lincRNA Interval_127744 chr5 107272732 107273657 + 0 NA intron (ENSMUSG00000029287.14, intron 1 of 6) protein_coding-intron (ENSMUSG00000029287.14, intron 1 of 16) 16401 ENSMUSG00000029287.14 ENSMUSG00000029287 ENSMUST00000146591 Tgfbr3 protein_coding Interval_120098 chr4 141809775 141810291 + 0 NA intron (ENSMUSG00000028914.13, intron 6 of 7) protein_coding-intron (ENSMUSG00000028914.13, intron 6 of 8) 15968 ENSMUSG00000058579.5 ENSMUSG00000058579 ENSMUST00000155826 Cela2a protein_coding Interval_12510 chr1 194625870 194626713 + 0 NA intron (ENSMUSG00000026640.12, intron 1 of 31) protein_coding-intron (ENSMUSG00000026640.12, intron 1 of 31) 8073 ENSMUSG00000026640.12 ENSMUSG00000026640 ENSMUST00000124785 Plxna2 protein_coding Interval_165768 chr9 52330243 52330459 + 0 NA intron (ENSMUSG00000111561.1, intron 2 of 2) lincRNA-intron (ENSMUSG00000111561.1, intron 2 of 2) 18960 ENSMUSG00000111561.1 ENSMUSG00000111561 ENSMUST00000214181 Gm47957 lincRNA Interval_57900 chr15 25213200 25214271 + 0 NA intron (ENSMUSG00000051237.7, intron 1 of 3) lincRNA-intron (ENSMUSG00000051237.7, intron 1 of 3) 12119 ENSMUSG00000115840.1 ENSMUSG00000115840 ENSMUST00000226135 5830426I08Rik TEC Interval_10810 chr1 175465622 175465910 + 0 NA intron (ENSMUSG00000026527.13, intron 2 of 17) protein_coding-intron (ENSMUSG00000026527.13, intron 1 of 15) -85090 ENSMUSG00000104343.1 ENSMUSG00000104343 ENSMUST00000194955 5730408A14Rik TEC Interval_111323 chr4 18793870 18794348 + 0 NA intron (ENSMUSG00000087402.1, intron 4 of 10) processed_transcript-intron (ENSMUSG00000087402.1, intron 4 of 10) 51570 ENSMUSG00000050550.7 ENSMUSG00000050550 ENSMUST00000121594 Gm11868 processed_pseudogene Interval_156677 chr8 56884139 56884675 + 0 NA intron (ENSMUSG00000110000.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000110000.1, intron 1 of 1) 4483 ENSMUSG00000110000.1 ENSMUSG00000110000 ENSMUST00000209983 Gm33501 lincRNA Interval_124169 chr5 38828281 38828693 + 0 NA intron (ENSMUSG00000039315.15, intron 2 of 18) protein_coding-intron (ENSMUSG00000039315.15, intron 2 of 18) 48325 ENSMUSG00000039315.15 ENSMUSG00000039315 ENSMUST00000171633 Clnk protein_coding Interval_96917 chr2 129454288 129455612 + 0 NA Intergenic Intergenic 60857 ENSMUSG00000086637.1 ENSMUSG00000086637 ENSMUST00000139058 Gm14040 sense_intronic Interval_42044 chr13 6828775 6829971 + 0 NA Intergenic Intergenic 96478 ENSMUSG00000113932.1 ENSMUSG00000113932 ENSMUST00000220700 2900024D18Rik TEC Interval_48814 chr13 103612640 103613141 + 0 NA intron (ENSMUSG00000114206.1, intron 1 of 3) lincRNA-intron (ENSMUSG00000114206.1, intron 1 of 3) -29036 ENSMUSG00000096642.1 ENSMUSG00000096642 ENSMUST00000179897 Gm24870 snRNA Interval_164530 chr9 37823023 37823400 + 0 NA promoter-TSS (ENSMUSG00000065620.1) snRNA-promoter-TSS (ENSMUSG00000065620.1) 74 ENSMUSG00000111310.1 ENSMUSG00000111310 ENSMUST00000217130 Gm47005 unprocessed_pseudogene Interval_14170 chr10 28271988 28272349 + 0 NA intron (ENSMUSG00000019889.10, intron 3 of 14) protein_coding-intron (ENSMUSG00000019889.10, intron 3 of 31) -58047 ENSMUSG00000076377.1 ENSMUSG00000076377 ENSMUST00000102422 Gm22370 miRNA Interval_119453 chr4 137713980 137714562 + 0 NA intron (ENSMUSG00000041351.16, intron 6 of 6) protein_coding-intron (ENSMUSG00000041351.16, intron 7 of 24) -7665 ENSMUSG00000087476.1 ENSMUSG00000087476 ENSMUST00000135358 Rap1gapos antisense Interval_97211 chr2 132271737 132272731 + 0 NA intron (ENSMUSG00000058793.14, intron 1 of 3) protein_coding-intron (ENSMUSG00000058793.14, intron 1 of 12) 8993 ENSMUSG00000058793.14 ENSMUSG00000058793 ENSMUST00000138194 Cds2 protein_coding Interval_166163 chr9 57180502 57180750 + 0 NA intron (ENSMUSG00000100282.1, intron 3 of 5) lincRNA-intron (ENSMUSG00000100282.1, intron 3 of 5) 5351 ENSMUSG00000100282.1 ENSMUSG00000100282 ENSMUST00000185243 1700041C23Rik lincRNA Interval_146778 chr7 50783779 50784265 + 0 NA intron (ENSMUSG00000055409.14, intron 15 of 18) protein_coding-intron (ENSMUSG00000055409.14, intron 15 of 19) 159132 ENSMUSG00000109409.1 ENSMUSG00000109409 ENSMUST00000209016 Gm9343 processed_pseudogene Interval_68066 chr16 64830096 64830577 + 0 NA intron (ENSMUSG00000047141.5, intron 2 of 8) protein_coding-intron (ENSMUSG00000047141.5, intron 2 of 8) 21316 ENSMUSG00000047141.5 ENSMUSG00000047141 ENSMUST00000052588 Zfp654 protein_coding Interval_148768 chr7 86595931 86596245 + 0 NA Intergenic Intergenic 12226 ENSMUSG00000059319.3 ENSMUSG00000059319 ENSMUST00000078447 Olfr295 protein_coding Interval_10198 chr1 167059431 167060393 + 0 NA intron (ENSMUSG00000060568.14, intron 1 of 2) protein_coding-intron (ENSMUSG00000060568.14, intron 1 of 2) 58495 ENSMUSG00000060568.14 ENSMUSG00000060568 ENSMUST00000128373 Fam78b protein_coding Interval_50373 chr14 12162808 12163069 + 0 NA intron (ENSMUSG00000021745.14, intron 1 of 3) protein_coding-intron (ENSMUSG00000021745.14, intron 12 of 29) 8955 ENSMUSG00000021745.14 ENSMUSG00000021745 ENSMUST00000134290 Ptprg protein_coding Interval_47924 chr13 94422381 94422617 + 0 NA intron (ENSMUSG00000021686.6, intron 7 of 26) protein_coding-intron (ENSMUSG00000021686.6, intron 7 of 26) -50364 ENSMUSG00000021686.6 ENSMUSG00000021686 ENSMUST00000220505 Ap3b1 protein_coding Interval_35722 chr12 28649318 28650225 + 0 NA exon (ENSMUSG00000020630.9, exon 1 of 8) protein_coding-exon (ENSMUSG00000020630.9, exon 1 of 8) 147 ENSMUSG00000020630.9 ENSMUSG00000020630 ENSMUST00000221496 Rnaseh1 protein_coding Interval_73891 chr17 45298454 45299014 + 0 NA Intergenic Intergenic 88768 ENSMUSG00000096425.1 ENSMUSG00000096425 ENSMUST00000178626 Gm24979 miRNA Interval_3078 chr1 52946678 52946885 + 0 NA intron (ENSMUSG00000043629.12, intron 1 of 1) protein_coding-intron (ENSMUSG00000043629.12, intron 1 of 1) -72783 ENSMUSG00000089802.1 ENSMUSG00000089802 ENSMUST00000162523 Gm16107 processed_pseudogene Interval_6529 chr1 114662525 114662782 + 0 NA Intergenic Intergenic 557110 ENSMUSG00000101687.1 ENSMUSG00000101687 ENSMUST00000185902 Gm4854 processed_pseudogene Interval_157533 chr8 71254451 71254743 + 0 NA TTS (ENSMUSG00000035439.13) protein_coding-TTS (ENSMUSG00000035439.13) 17863 ENSMUSG00000035439.13 ENSMUSG00000035439 ENSMUST00000128833 Haus8 protein_coding Interval_112733 chr4 44480724 44480947 + 0 NA Intergenic Intergenic -68240 ENSMUSG00000077587.1 ENSMUSG00000077587 ENSMUST00000104399 Gm24376 snoRNA Interval_130211 chr5 124968275 124968482 + 0 NA Intergenic Intergenic -35097 ENSMUSG00000037962.7 ENSMUSG00000037962 ENSMUST00000145946 Rflna protein_coding Interval_68335 chr16 73406417 73407075 + 0 NA intron (ENSMUSG00000116976.1, intron 3 of 4) processed_transcript-intron (ENSMUSG00000116976.1, intron 2 of 4) 16213 ENSMUSG00000064830.1 ENSMUSG00000064830 ENSMUST00000082896 Gm25699 snRNA Interval_120119 chr4 141944297 141944823 + 0 NA intron (ENSMUSG00000051435.11, intron 2 of 6) protein_coding-intron (ENSMUSG00000051435.11, intron 13 of 31) -22134 ENSMUSG00000051435.11 ENSMUSG00000051435 ENSMUST00000125293 Fhad1 protein_coding Interval_77449 chr17 88892239 88892555 + 0 NA Intergenic Intergenic -35775 ENSMUSG00000117566.1 ENSMUSG00000117566 ENSMUST00000234561 Gm9407 processed_pseudogene Interval_78462 chr18 13004283 13004614 + 0 NA Intergenic Intergenic -2589 ENSMUSG00000037346.5 ENSMUSG00000037346 ENSMUST00000234565 Hrh4 protein_coding Interval_81059 chr18 53405510 53406010 + 0 NA TTS (ENSMUSG00000024538.8) protein_coding-TTS (ENSMUSG00000024538.8) 12355 ENSMUSG00000024538.8 ENSMUSG00000024538 ENSMUST00000025419 Ppic protein_coding Interval_7361 chr1 130473895 130475075 + 0 NA exon (ENSMUSG00000103751.1, exon 1 of 1) TEC-exon (ENSMUSG00000103751.1, exon 1 of 1) 742 ENSMUSG00000103751.1 ENSMUSG00000103751 ENSMUST00000193111 Gm37283 TEC Interval_137139 chr6 67982179 67982835 + 0 NA Intergenic Intergenic -27793 ENSMUSG00000076512.2 ENSMUSG00000076512 ENSMUST00000103313 Igkv9-123 IG_V_gene Interval_77909 chr18 5375822 5377006 + 0 NA Intergenic Intergenic -5932 ENSMUSG00000117617.1 ENSMUSG00000117617 ENSMUST00000234572 Gm50065 lincRNA Interval_52808 chr14 50799761 50800030 + 0 NA intron (ENSMUSG00000071470.4, intron 1 of 2) protein_coding-intron (ENSMUSG00000071470.4, intron 1 of 2) 7837 ENSMUSG00000071470.4 ENSMUSG00000071470 ENSMUST00000227614 Ccnb1ip1 protein_coding Interval_102102 chr3 17489639 17489961 + 0 NA Intergenic Intergenic 93921 ENSMUSG00000102646.1 ENSMUSG00000102646 ENSMUST00000192364 Gm19694 processed_pseudogene Interval_74541 chr17 53169550 53169803 + 0 NA Intergenic Intergenic -26775 ENSMUSG00000117244.1 ENSMUSG00000117244 ENSMUST00000233156 Gm9210 processed_pseudogene Interval_164463 chr9 37228618 37228885 + 0 NA exon (ENSMUSG00000032122.15, exon 18 of 18) protein_coding-exon (ENSMUSG00000032122.15, exon 18 of 18) 6403 ENSMUSG00000032122.15 ENSMUSG00000032122 ENSMUST00000162018 Slc37a2 protein_coding Interval_61682 chr15 83374095 83375735 + 0 NA TTS (ENSMUSG00000016664.16) protein_coding-TTS (ENSMUSG00000016664.16) -7904 ENSMUSG00000075511.9 ENSMUSG00000075511 ENSMUST00000177890 1700001L05Rik lincRNA Interval_2741 chr1 44064767 44065086 + 0 NA exon (ENSMUSG00000091844.2, exon 4 of 4) protein_coding-exon (ENSMUSG00000091844.2, exon 4 of 4) 14820 ENSMUSG00000091844.2 ENSMUSG00000091844 ENSMUST00000168641 Gm8251 protein_coding Interval_142570 chr6 143386234 143386757 + 0 NA Intergenic Intergenic 78902 ENSMUSG00000077241.1 ENSMUSG00000077241 ENSMUST00000104053 Gm23272 snoRNA Interval_138606 chr6 90368902 90370689 + 0 NA exon (ENSMUSG00000034430.16, exon 1 of 7) protein_coding-exon (ENSMUSG00000034430.16, exon 1 of 7) 182 ENSMUSG00000034430.16 ENSMUSG00000034430 ENSMUST00000137483 Zxdc protein_coding Interval_37300 chr12 64944787 64945121 + 0 NA intron (ENSMUSG00000020948.9, intron 4 of 4) protein_coding-intron (ENSMUSG00000020948.9, intron 4 of 4) 20580 ENSMUSG00000020948.9 ENSMUSG00000020948 ENSMUST00000221957 Klhl28 protein_coding Interval_21562 chr10 129942352 129942855 + 0 NA Intergenic Intergenic 6484 ENSMUSG00000058071.4 ENSMUSG00000058071 ENSMUST00000205227 Olfr818 protein_coding Interval_8338 chr1 137468321 137468809 + 0 NA Intergenic Intergenic 62665 ENSMUSG00000103070.1 ENSMUSG00000103070 ENSMUST00000192122 Gm37903 TEC Interval_160660 chr8 111403423 111404000 + 0 NA Intergenic Intergenic -9893 ENSMUSG00000033579.16 ENSMUSG00000033579 ENSMUST00000162463 Fa2h protein_coding Interval_167160 chr9 65703320 65704829 + 0 NA exon (ENSMUSG00000040524.9, exon 5 of 10) protein_coding-exon (ENSMUSG00000040524.9, exon 5 of 10) 34362 ENSMUSG00000040652.16 ENSMUSG00000040652 ENSMUST00000128664 Oaz2 protein_coding Interval_33390 chr11 116288124 116288592 + 0 NA TTS (ENSMUSG00000020792.15) protein_coding-TTS (ENSMUSG00000020792.15) 2800 ENSMUSG00000118502.1 ENSMUSG00000118502 ENSMUST00000238971 AL645861.1 unitary_pseudogene Interval_147470 chr7 67549144 67549491 + 0 NA intron (ENSMUSG00000030556.13, intron 5 of 5) protein_coding-intron (ENSMUSG00000030556.13, intron 6 of 9) 21386 ENSMUSG00000087926.1 ENSMUSG00000087926 ENSMUST00000157301 Gm23233 snoRNA Interval_50748 chr14 18990408 18990610 + 0 NA Intergenic Intergenic 25428 ENSMUSG00000114548.1 ENSMUSG00000114548 ENSMUST00000223948 Gm6785 processed_pseudogene Interval_108987 chr3 133976493 133976986 + 0 NA intron (ENSMUSG00000097911.2, intron 2 of 2) antisense-intron (ENSMUSG00000097911.2, intron 2 of 2) 125326 ENSMUSG00000097911.2 ENSMUSG00000097911 ENSMUST00000180471 Gm26691 antisense Interval_28378 chr11 75486279 75487276 + 0 NA promoter-TSS (ENSMUSG00000020850.14) protein_coding-promoter-TSS (ENSMUSG00000020850.14) -5469 ENSMUSG00000020850.14 ENSMUSG00000020850 ENSMUST00000133995 Prpf8 protein_coding Interval_66623 chr16 35709073 35709871 + 0 NA intron (ENSMUSG00000022848.8, intron 6 of 7) protein_coding-intron (ENSMUSG00000022848.8, intron 7 of 8) 12761 ENSMUSG00000087793.1 ENSMUSG00000087793 ENSMUST00000157168 Gm25967 snoRNA Interval_111647 chr4 25146208 25146843 + 0 NA intron (ENSMUSG00000085885.1, intron 2 of 4) processed_transcript-intron (ENSMUSG00000085885.1, intron 2 of 4) 96351 ENSMUSG00000028259.13 ENSMUSG00000028259 ENSMUST00000108204 Fhl5 protein_coding Interval_109097 chr3 135713183 135714166 + 0 NA Intergenic Intergenic -59108 ENSMUSG00000106149.1 ENSMUSG00000106149 ENSMUST00000196513 Gm43430 TEC Interval_41166 chr12 111583446 111583744 + 0 NA intron (ENSMUSG00000007411.16, intron 1 of 15) protein_coding-intron (ENSMUSG00000007411.16, intron 1 of 15) -9255 ENSMUSG00000096995.2 ENSMUSG00000096995 ENSMUST00000221597 2810029C07Rik bidirectional_promoter_lncRNA Interval_90862 chr2 33037262 33037573 + 0 NA intron (ENSMUSG00000038860.15, intron 7 of 17) protein_coding-intron (ENSMUSG00000038860.15, intron 7 of 27) -2633 ENSMUSG00000038860.15 ENSMUSG00000038860 ENSMUST00000124000 Garnl3 protein_coding Interval_124990 chr5 63439931 63440120 + 0 NA Intergenic Intergenic 210869 ENSMUSG00000104868.1 ENSMUSG00000104868 ENSMUST00000067917 Gm9954 TEC Interval_161038 chr8 117078026 117080143 + 0 NA intron (ENSMUSG00000034416.18, intron 3 of 42) protein_coding-intron (ENSMUSG00000034416.18, intron 3 of 42) -16914 ENSMUSG00000031845.15 ENSMUSG00000031845 ENSMUST00000176860 Bco1 protein_coding Interval_43529 chr13 32801626 32803131 + 0 NA TTS (ENSMUSG00000042874.2) antisense-TTS (ENSMUSG00000042874.2) 713 ENSMUSG00000042874.2 ENSMUSG00000042874 ENSMUST00000057911 D930007J09Rik antisense Interval_11851 chr1 186273794 186274519 + 0 NA Intergenic Intergenic -73159 ENSMUSG00000102217.1 ENSMUSG00000102217 ENSMUST00000192552 Gm37491 TEC Interval_163642 chr9 23016882 23017652 + 0 NA Intergenic Intergenic -206019 ENSMUSG00000031963.8 ENSMUSG00000031963 ENSMUST00000214050 Bmper protein_coding Interval_75436 chr17 66533451 66533684 + 0 NA exon (ENSMUSG00000117235.1, exon 2 of 3) lincRNA-exon (ENSMUSG00000117235.1, exon 2 of 3) 1464 ENSMUSG00000117235.1 ENSMUSG00000117235 ENSMUST00000233785 Gm49938 lincRNA Interval_14988 chr10 41736582 41736807 + 0 NA intron (ENSMUSG00000019813.16, intron 4 of 6) protein_coding-intron (ENSMUSG00000019813.16, intron 4 of 10) -10027 ENSMUSG00000102114.2 ENSMUSG00000102114 ENSMUST00000190793 BC048559 antisense Interval_4142 chr1 70611403 70611573 + 0 NA intron (ENSMUSG00000053153.14, intron 7 of 7) protein_coding-intron (ENSMUSG00000053153.14, intron 16 of 16) 14673 ENSMUSG00000075952.1 ENSMUSG00000075952 ENSMUST00000102000 Gm23422 snRNA Interval_138620 chr6 90507002 90509222 + 0 NA intron (ENSMUSG00000030088.15, intron 1 of 2) protein_coding-intron (ENSMUSG00000030088.15, intron 1 of 2) -5190 ENSMUSG00000108271.1 ENSMUSG00000108271 ENSMUST00000204492 Gm44236 TEC Interval_94004 chr2 80629351 80630103 + 0 NA promoter-TSS (ENSMUSG00000086436.2) processed_pseudogene-promoter-TSS (ENSMUSG00000086436.2) -159 ENSMUSG00000086436.2 ENSMUSG00000086436 ENSMUST00000118989 Gm13690 processed_pseudogene Interval_143497 chr7 10650055 10650683 + 0 NA promoter-TSS (ENSMUSG00000093534.1) unprocessed_pseudogene-promoter-TSS (ENSMUSG00000093534.1) 70 ENSMUSG00000093534.1 ENSMUSG00000093534 ENSMUST00000175667 Vmn1r-ps51 unprocessed_pseudogene Interval_41045 chr12 110787464 110787699 + 0 NA intron (ENSMUSG00000037957.14, intron 4 of 4) protein_coding-intron (ENSMUSG00000037957.14, intron 2 of 2) 49372 ENSMUSG00000037957.14 ENSMUSG00000037957 ENSMUST00000194118 Wdr20 protein_coding Interval_114705 chr4 84069392 84070554 + 0 NA Intergenic Intergenic -25094 ENSMUSG00000085217.1 ENSMUSG00000085217 ENSMUST00000125884 6030471H07Rik lincRNA Interval_120984 chr4 152057555 152057826 + 0 NA intron (ENSMUSG00000028948.16, intron 9 of 10) protein_coding-intron (ENSMUSG00000028948.16, intron 10 of 11) 18369 ENSMUSG00000028948.16 ENSMUSG00000028948 ENSMUST00000131696 Nol9 protein_coding Interval_157233 chr8 68278746 68278981 + 0 NA intron (ENSMUSG00000053886.4, intron 1 of 8) protein_coding-intron (ENSMUSG00000053886.4, intron 1 of 8) -3444 ENSMUSG00000053886.4 ENSMUSG00000053886 ENSMUST00000212166 Sh2d4a protein_coding Interval_94189 chr2 84944089 84944302 + 0 NA intron (ENSMUSG00000027074.14, intron 3 of 5) protein_coding-intron (ENSMUSG00000027074.14, intron 4 of 12) 7305 ENSMUSG00000027074.14 ENSMUSG00000027074 ENSMUST00000155537 Slc43a3 protein_coding Interval_95010 chr2 103010863 103011106 + 0 NA Intergenic Intergenic 62351 ENSMUSG00000010914.10 ENSMUSG00000010914 ENSMUST00000111183 Pdhx protein_coding Interval_150381 chr7 110046472 110046660 + 0 NA TTS (ENSMUSG00000064451.1) snoRNA-TTS (ENSMUSG00000064451.1) 202 ENSMUSG00000064451.1 ENSMUSG00000064451 ENSMUST00000082517 Snora23 snoRNA Interval_69822 chr16 97017345 97017739 + 0 NA intron (ENSMUSG00000050272.10, intron 3 of 32) protein_coding-intron (ENSMUSG00000050272.10, intron 3 of 32) 98810 ENSMUSG00000117324.1 ENSMUSG00000117324 ENSMUST00000232718 Gm32432 antisense Interval_161374 chr8 120032352 120033155 + 0 NA intron (ENSMUSG00000031825.16, intron 1 of 3) protein_coding-intron (ENSMUSG00000031825.16, intron 12 of 14) 12534 ENSMUSG00000089776.1 ENSMUSG00000089776 ENSMUST00000160605 Gm15684 antisense Interval_83384 chr18 84752744 84752937 + 0 NA intron (ENSMUSG00000118075.1, intron 2 of 2) lincRNA-intron (ENSMUSG00000118075.1, intron 2 of 2) 8773 ENSMUSG00000118075.1 ENSMUSG00000118075 ENSMUST00000236805 Gm38576 lincRNA Interval_5425 chr1 88694192 88695151 + 0 NA intron (ENSMUSG00000049866.12, intron 1 of 2) protein_coding-intron (ENSMUSG00000049866.12, intron 1 of 2) 7205 ENSMUSG00000049866.12 ENSMUSG00000049866 ENSMUST00000159814 Arl4c protein_coding Interval_8737 chr1 150257777 150258263 + 0 NA Intergenic Intergenic 7979 ENSMUSG00000099875.1 ENSMUSG00000099875 ENSMUST00000121422 Rbm3-ps processed_pseudogene Interval_5562 chr1 89830935 89831367 + 0 NA intron (ENSMUSG00000055013.16, intron 2 of 2) protein_coding-intron (ENSMUSG00000055013.16, intron 13 of 17) 5670 ENSMUSG00000103252.1 ENSMUSG00000103252 ENSMUST00000193177 Gm37521 TEC Interval_33543 chr11 117114372 117115734 + 0 NA promoter-TSS (ENSMUSG00000020823.16) protein_coding-promoter-TSS (ENSMUSG00000020823.16) -17437 ENSMUSG00000089343.1 ENSMUSG00000089343 ENSMUST00000158718 Gm22667 misc_RNA Interval_103027 chr3 34615488 34615983 + 0 NA intron (ENSMUSG00000105265.4, intron 3 of 4) processed_transcript-intron (ENSMUSG00000105265.4, intron 4 of 4) -13487 ENSMUSG00000105222.1 ENSMUSG00000105222 ENSMUST00000199244 Gm42205 lincRNA Interval_134191 chr6 22493847 22494905 + 0 NA Intergenic Intergenic -128542 ENSMUSG00000107282.1 ENSMUSG00000107282 ENSMUST00000201550 Gm43630 processed_pseudogene Interval_138555 chr6 89287930 89288913 + 0 NA Intergenic Intergenic -15214 ENSMUSG00000107622.1 ENSMUSG00000107622 ENSMUST00000204566 4930512J16Rik lincRNA Interval_97245 chr2 132599400 132599574 + 0 NA intron (ENSMUSG00000074783.10, intron 1 of 3) lincRNA-intron (ENSMUSG00000074783.10, intron 1 of 3) 1292 ENSMUSG00000074783.10 ENSMUSG00000074783 ENSMUST00000138751 AU019990 lincRNA Interval_68931 chr16 89288299 89288544 + 0 NA Intergenic Intergenic 82560 ENSMUSG00000091039.2 ENSMUSG00000091039 ENSMUST00000169954 Krtap20-2 protein_coding Interval_141313 chr6 127120790 127120992 + 0 NA Intergenic Intergenic -2075 ENSMUSG00000107379.1 ENSMUSG00000107379 ENSMUST00000201546 Gm43126 antisense Interval_83700 chr19 3820951 3821245 + 0 NA TTS (ENSMUSG00000117779.1) processed_pseudogene-TTS (ENSMUSG00000117779.1) 1291 ENSMUSG00000117779.1 ENSMUSG00000117779 ENSMUST00000236552 Gm19209 processed_pseudogene Interval_12216 chr1 190904976 190905659 + 0 NA intron (ENSMUSG00000089872.10, intron 1 of 12) protein_coding-intron (ENSMUSG00000089872.10, intron 1 of 14) -5600 ENSMUSG00000089872.10 ENSMUSG00000089872 ENSMUST00000159066 Rps6kc1 protein_coding Interval_142065 chr6 136906374 136908121 + 0 NA TTS (ENSMUSG00000030219.13) protein_coding-TTS (ENSMUSG00000030219.13) 14893 ENSMUSG00000030219.13 ENSMUSG00000030219 ENSMUST00000162755 Erp27 protein_coding Interval_99638 chr2 163787346 163788655 + 0 NA Intergenic Intergenic -32861 ENSMUSG00000027656.7 ENSMUSG00000027656 ENSMUST00000029188 Ccn5 protein_coding Interval_68466 chr16 77368665 77369338 + 0 NA intron (ENSMUSG00000090386.10, intron 2 of 6) processed_transcript-intron (ENSMUSG00000090386.10, intron 2 of 4) -12949 ENSMUSG00000103972.1 ENSMUSG00000103972 ENSMUST00000195692 Gm37466 TEC Interval_137040 chr6 66905018 66905238 + 0 NA intron (ENSMUSG00000036402.13, intron 1 of 3) protein_coding-intron (ENSMUSG00000036402.13, intron 1 of 4) 8237 ENSMUSG00000036402.13 ENSMUSG00000036402 ENSMUST00000204862 Gng12 protein_coding Interval_150224 chr7 108457543 108457902 + 0 NA Intergenic Intergenic 1613 ENSMUSG00000109081.1 ENSMUSG00000109081 ENSMUST00000207507 Gm44611 processed_pseudogene Interval_105567 chr3 87802529 87802847 + 0 NA intron (ENSMUSG00000005640.11, intron 2 of 2) protein_coding-intron (ENSMUSG00000005640.11, intron 3 of 21) 745 ENSMUSG00000005640.11 ENSMUSG00000005640 ENSMUST00000166866 Insrr protein_coding Interval_164109 chr9 31553135 31553995 + 0 NA Intergenic Intergenic -6044 ENSMUSG00000111853.1 ENSMUSG00000111853 ENSMUST00000216695 Gm31408 lincRNA Interval_78746 chr18 20173029 20173398 + 0 NA Intergenic Intergenic -58342 ENSMUSG00000044322.7 ENSMUSG00000044322 ENSMUST00000226115 Dsc1 protein_coding Interval_142064 chr6 136897702 136897979 + 0 NA Intergenic Intergenic -22059 ENSMUSG00000030218.2 ENSMUSG00000030218 ENSMUST00000203103 Mgp protein_coding Interval_85099 chr19 22822013 22824453 + 0 NA intron (ENSMUSG00000052387.16, intron 8 of 24) protein_coding-intron (ENSMUSG00000052387.16, intron 8 of 26) 72628 ENSMUSG00000065507.3 ENSMUSG00000065507 ENSMUST00000083573 Mir204 miRNA Interval_111493 chr4 22144590 22145714 + 0 NA Intergenic Intergenic -27620 ENSMUSG00000082490.1 ENSMUSG00000082490 ENSMUST00000117612 Gm11880 processed_pseudogene Interval_53329 chr14 56278170 56279623 + 0 NA Intergenic Intergenic 3103 ENSMUSG00000114820.1 ENSMUSG00000114820 ENSMUST00000224940 Gm48200 processed_pseudogene Interval_156698 chr8 57430830 57431050 + 0 NA Intergenic Intergenic -24983 ENSMUSG00000031610.3 ENSMUSG00000031610 ENSMUST00000034023 Scrg1 protein_coding Interval_145161 chr7 30373462 30374031 + 0 NA Intergenic Intergenic -10974 ENSMUSG00000036957.8 ENSMUSG00000036957 ENSMUST00000046351 Lrfn3 protein_coding Interval_73665 chr17 42577926 42578147 + 0 NA intron (ENSMUSG00000043972.8, intron 5 of 6) protein_coding-intron (ENSMUSG00000043972.8, intron 5 of 6) 33359 ENSMUSG00000043972.8 ENSMUSG00000043972 ENSMUST00000068355 Opn5 protein_coding Interval_94250 chr2 86441856 86443219 + 0 NA Intergenic Intergenic -4036 ENSMUSG00000110878.1 ENSMUSG00000110878 ENSMUST00000213670 Olfr1064-ps1 unprocessed_pseudogene Interval_162880 chr9 11208778 11208970 + 0 NA Intergenic Intergenic 29996 ENSMUSG00000110942.1 ENSMUSG00000110942 ENSMUST00000217327 Gm47029 processed_pseudogene Interval_164797 chr9 41973920 41974922 + 0 NA exon (ENSMUSG00000049313.8, exon 1 of 2) protein_coding-exon (ENSMUSG00000049313.8, exon 1 of 2) 10149 ENSMUSG00000049313.8 ENSMUSG00000049313 ENSMUST00000139133 Sorl1 protein_coding Interval_100297 chr2 168245659 168245886 + 0 NA Intergenic Intergenic -3342 ENSMUSG00000083342.1 ENSMUSG00000083342 ENSMUST00000122080 Gm14237 processed_pseudogene Interval_18411 chr10 85606680 85606932 + 0 NA TTS (ENSMUSG00000020042.15) protein_coding-TTS (ENSMUSG00000020042.15) -38397 ENSMUSG00000020042.15 ENSMUSG00000020042 ENSMUST00000145433 Btbd11 protein_coding Interval_169308 chr9 96288230 96289098 + 0 NA TTS (ENSMUSG00000032411.15) protein_coding-intron (ENSMUSG00000032411.15, intron 3 of 9) 307 ENSMUSG00000032411.15 ENSMUSG00000032411 ENSMUST00000191133 Tfdp2 protein_coding Interval_116563 chr4 115715708 115716141 + 0 NA Intergenic Intergenic 8673 ENSMUSG00000081172.1 ENSMUSG00000081172 ENSMUST00000120013 Gm12849 processed_pseudogene Interval_12259 chr1 191186476 191186874 + 0 NA intron (ENSMUSG00000026628.13, intron 1 of 3) protein_coding-intron (ENSMUSG00000026628.13, intron 1 of 3) -10231 ENSMUSG00000088461.1 ENSMUSG00000088461 ENSMUST00000157836 Gm24748 misc_RNA Interval_159330 chr8 93626600 93627289 + 0 NA intron (ENSMUSG00000110534.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000110534.1, intron 1 of 2) 1680 ENSMUSG00000110534.1 ENSMUSG00000110534 ENSMUST00000212213 Gm45708 lincRNA Interval_134177 chr6 22376611 22376948 + 0 NA Intergenic Intergenic -32866 ENSMUSG00000029672.16 ENSMUSG00000029672 ENSMUST00000168965 Fam3c protein_coding Interval_128727 chr5 114942066 114942709 + 0 NA intron (ENSMUSG00000029559.15, intron 1 of 3) protein_coding-intron (ENSMUSG00000029559.15, intron 1 of 5) 183 ENSMUSG00000029559.15 ENSMUSG00000029559 ENSMUST00000131771 2210016L21Rik protein_coding Interval_138173 chr6 85888839 85889707 + 0 NA promoter-TSS (ENSMUSG00000106784.1) processed_pseudogene-promoter-TSS (ENSMUSG00000106784.1) -53 ENSMUSG00000106784.1 ENSMUSG00000106784 ENSMUST00000200837 Gm43309 processed_pseudogene Interval_1735 chr1 33257008 33257884 + 0 NA Intergenic Intergenic 21507 ENSMUSG00000101754.2 ENSMUSG00000101754 ENSMUST00000187673 Gm2987 processed_pseudogene Interval_83116 chr18 81511644 81511956 + 0 NA intron (ENSMUSG00000118300.1, intron 2 of 2) lincRNA-intron (ENSMUSG00000118300.1, intron 2 of 2) 31443 ENSMUSG00000118300.1 ENSMUSG00000118300 ENSMUST00000237597 Gm50412 lincRNA Interval_168784 chr9 87027622 87028084 + 0 NA intron (ENSMUSG00000032872.16, intron 2 of 15) protein_coding-intron (ENSMUSG00000032872.16, intron 2 of 15) 5766 ENSMUSG00000032872.16 ENSMUSG00000032872 ENSMUST00000174294 Cyb5r4 protein_coding Interval_147279 chr7 65450277 65450465 + 0 NA intron (ENSMUSG00000030516.14, intron 2 of 4) protein_coding-intron (ENSMUSG00000030516.14, intron 2 of 4) 30850 ENSMUSG00000108533.1 ENSMUSG00000108533 ENSMUST00000207008 Gm44792 TEC Interval_53466 chr14 57695161 57696218 + 0 NA intron (ENSMUSG00000021959.16, intron 7 of 8) protein_coding-intron (ENSMUSG00000021959.16, intron 6 of 7) -2120 ENSMUSG00000064525.1 ENSMUSG00000064525 ENSMUST00000082591 Gm26440 snoRNA Interval_4048 chr1 66834860 66835317 + 0 NA intron (ENSMUSG00000026003.5, intron 10 of 10) protein_coding-intron (ENSMUSG00000026003.5, intron 10 of 10) -9174 ENSMUSG00000103553.1 ENSMUSG00000103553 ENSMUST00000193555 Gm38218 TEC Interval_163515 chr9 21809840 21810034 + 0 NA promoter-TSS (ENSMUSG00000098473.1) miRNA-promoter-TSS (ENSMUSG00000098473.1) 63 ENSMUSG00000098473.1 ENSMUSG00000098473 ENSMUST00000184374 Mir7083 miRNA Interval_59168 chr15 45798586 45798799 + 0 NA Intergenic Intergenic -163834 ENSMUSG00000115549.1 ENSMUSG00000115549 ENSMUST00000228018 Gm2203 processed_pseudogene Interval_34687 chr12 8690825 8691192 + 0 NA intron (ENSMUSG00000020594.14, intron 2 of 4) protein_coding-intron (ENSMUSG00000020594.14, intron 1 of 19) 16874 ENSMUSG00000020594.14 ENSMUSG00000020594 ENSMUST00000171608 Pum2 protein_coding Interval_20891 chr10 121770629 121771456 + 0 NA Intergenic Intergenic 20162 ENSMUSG00000053684.8 ENSMUSG00000053684 ENSMUST00000138630 BC048403 protein_coding Interval_18434 chr10 85927953 85929247 + 0 NA promoter-TSS (ENSMUSG00000085111.3) protein_coding-promoter-TSS (ENSMUSG00000085111.3) 919 ENSMUSG00000085111.3 ENSMUSG00000085111 ENSMUST00000156605 Ascl4 protein_coding Interval_117583 chr4 124840985 124841272 + 0 NA intron (ENSMUSG00000028890.13, intron 10 of 11) protein_coding-intron (ENSMUSG00000028890.13, intron 9 of 10) 10068 ENSMUSG00000078570.10 ENSMUSG00000078570 ENSMUST00000137769 1110065P20Rik protein_coding Interval_45155 chr13 52811992 52813804 + 0 NA Intergenic Intergenic -55693 ENSMUSG00000113737.1 ENSMUSG00000113737 ENSMUST00000223209 BB123696 lincRNA Interval_130105 chr5 124312339 124312823 + 0 NA intron (ENSMUSG00000038126.17, intron 6 of 22) protein_coding-intron (ENSMUSG00000038126.17, intron 5 of 21) -10754 ENSMUSG00000105228.1 ENSMUSG00000105228 ENSMUST00000200448 Gm43340 TEC Interval_37896 chr12 72847667 72847977 + 0 NA Intergenic Intergenic 30110 ENSMUSG00000113779.1 ENSMUSG00000113779 ENSMUST00000222961 Gm33785 lincRNA Interval_44364 chr13 44228298 44229511 + 0 NA Intergenic Intergenic -3494 ENSMUSG00000113727.1 ENSMUSG00000113727 ENSMUST00000221767 Gm47781 lincRNA Interval_80926 chr18 50242655 50242862 + 0 NA Intergenic Intergenic 8120 ENSMUSG00000118595.1 ENSMUSG00000118595 ENSMUST00000239331 AC118632.1 processed_pseudogene Interval_31195 chr11 98825885 98826299 + 0 NA intron (ENSMUSG00000078676.9, intron 7 of 13) protein_coding-intron (ENSMUSG00000078676.9, intron 8 of 14) -16005 ENSMUSG00000075576.12 ENSMUSG00000075576 ENSMUST00000141696 Gm12359 antisense Interval_152511 chr7 133697485 133698866 + 0 NA promoter-TSS (ENSMUSG00000030979.13) protein_coding-promoter-TSS (ENSMUSG00000030979.13) 4363 ENSMUSG00000030979.13 ENSMUSG00000030979 ENSMUST00000151348 Uros protein_coding Interval_77665 chr17 93874388 93875000 + 0 NA Intergenic Intergenic -193660 ENSMUSG00000117537.1 ENSMUSG00000117537 ENSMUST00000234228 Gm50003 processed_pseudogene Interval_145750 chr7 38030338 38031158 + 0 NA Intergenic Intergenic -7197 ENSMUSG00000030421.9 ENSMUSG00000030421 ENSMUST00000206169 Uri1 protein_coding Interval_155801 chr8 38783723 38784536 + 0 NA Intergenic Intergenic -45577 ENSMUSG00000118594.1 ENSMUSG00000118594 ENSMUST00000239372 AC163680.1 unprocessed_pseudogene Interval_146570 chr7 46901654 46901991 + 0 NA intron (ENSMUSG00000014402.15, intron 6 of 6) protein_coding-intron (ENSMUSG00000014402.15, intron 6 of 9) 12588 ENSMUSG00000014402.15 ENSMUSG00000014402 ENSMUST00000143413 Tsg101 protein_coding Interval_9193 chr1 154993697 154994026 + 0 NA Intergenic Intergenic -37878 ENSMUSG00000101433.1 ENSMUSG00000101433 ENSMUST00000191584 Gm29441 processed_pseudogene Interval_11088 chr1 179261269 179262266 + 0 NA intron (ENSMUSG00000055067.15, intron 5 of 11) protein_coding-intron (ENSMUSG00000055067.15, intron 5 of 11) 256238 ENSMUSG00000055067.15 ENSMUSG00000055067 ENSMUST00000194237 Smyd3 protein_coding Interval_5726 chr1 91277341 91277548 + 0 NA TTS (ENSMUSG00000034343.14) protein_coding-TTS (ENSMUSG00000034343.14) -18601 ENSMUSG00000083064.1 ENSMUSG00000083064 ENSMUST00000117121 Gm7785 processed_pseudogene Interval_96889 chr2 129236447 129237068 + 0 NA Intergenic Intergenic -9619 ENSMUSG00000085485.1 ENSMUSG00000085485 ENSMUST00000141964 Gm14024 antisense Interval_138814 chr6 92156351 92156767 + 0 NA promoter-TSS (ENSMUSG00000005893.14) protein_coding-promoter-TSS (ENSMUSG00000005893.14) -10266 ENSMUSG00000108199.1 ENSMUSG00000108199 ENSMUST00000204538 Gm44249 TEC Interval_131078 chr5 134960760 134960978 + 0 NA Intergenic Intergenic -13935 ENSMUSG00000047501.3 ENSMUSG00000047501 ENSMUST00000051401 Cldn4 protein_coding Interval_170896 chr9 111732158 111732722 + 0 NA Intergenic Intergenic -42111 ENSMUSG00000032502.8 ENSMUSG00000032502 ENSMUST00000162345 Stac protein_coding Interval_144241 chr7 23745635 23746456 + 0 NA Intergenic Intergenic -6225 ENSMUSG00000090411.2 ENSMUSG00000090411 ENSMUST00000167551 Vmn1r174 protein_coding Interval_82483 chr18 74391577 74392043 + 0 NA Intergenic Intergenic -8798 ENSMUSG00000117898.1 ENSMUSG00000117898 ENSMUST00000238045 Gm8986 processed_pseudogene Interval_86641 chr19 42224340 42224546 + 0 NA Intergenic Intergenic -22191 ENSMUSG00000018822.7 ENSMUSG00000018822 ENSMUST00000018966 Sfrp5 protein_coding Interval_56662 chr14 121254220 121255751 + 0 NA promoter-TSS (ENSMUSG00000025555.14) protein_coding-promoter-TSS (ENSMUSG00000025555.14) 6279 ENSMUSG00000085133.2 ENSMUSG00000085133 ENSMUST00000130256 B930095G15Rik sense_intronic Interval_64657 chr16 13959389 13959617 + 0 NA Intergenic Intergenic 9954 ENSMUSG00000089207.1 ENSMUSG00000089207 ENSMUST00000158582 Gm26213 rRNA Interval_162175 chr8 125699274 125701147 + 0 NA Intergenic Intergenic 30392 ENSMUSG00000050930.5 ENSMUSG00000050930 ENSMUST00000053078 Map10 protein_coding Interval_83010 chr18 80362660 80364195 + 0 NA promoter-TSS (ENSMUSG00000059852.7) protein_coding-promoter-TSS (ENSMUSG00000059852.7) -91 ENSMUSG00000059852.7 ENSMUSG00000059852 ENSMUST00000184366 Kcng2 protein_coding Interval_76623 chr17 82873884 82874572 + 0 NA Intergenic Intergenic -81768 ENSMUSG00000117472.1 ENSMUSG00000117472 ENSMUST00000234284 Gm4601 processed_pseudogene Interval_125801 chr5 74264711 74266631 + 0 NA intron (ENSMUSG00000062110.14, intron 5 of 7) protein_coding-intron (ENSMUSG00000062110.14, intron 5 of 8) -16055 ENSMUSG00000107209.1 ENSMUSG00000107209 ENSMUST00000201308 Gm42599 TEC Interval_1335 chr1 20769337 20770388 + 0 NA Intergenic Intergenic 9692 ENSMUSG00000041872.9 ENSMUSG00000041872 ENSMUST00000190692 Il17f protein_coding Interval_15314 chr10 44446891 44448794 + 0 NA intron (ENSMUSG00000038151.13, intron 3 of 6) protein_coding-intron (ENSMUSG00000038151.13, intron 4 of 7) 9368 ENSMUSG00000038151.13 ENSMUSG00000038151 ENSMUST00000167340 Prdm1 protein_coding Interval_36818 chr12 54352371 54354911 + 0 NA Intergenic Intergenic -36626 ENSMUSG00000112705.1 ENSMUSG00000112705 ENSMUST00000217997 Gm47552 lincRNA Interval_53884 chr14 63130650 63130913 + 0 NA intron (ENSMUSG00000021939.8, intron 1 of 9) protein_coding-intron (ENSMUSG00000021939.8, intron 1 of 9) 8267 ENSMUSG00000021939.8 ENSMUSG00000021939 ENSMUST00000225540 Ctsb protein_coding Interval_36630 chr12 51654282 51654491 + 0 NA intron (ENSMUSG00000020954.16, intron 4 of 15) protein_coding-intron (ENSMUSG00000020954.16, intron 4 of 17) -10588 ENSMUSG00000020954.16 ENSMUSG00000020954 ENSMUST00000218212 Strn3 protein_coding Interval_118933 chr4 134534304 134535935 + 0 NA promoter-TSS (ENSMUSG00000046671.18) protein_coding-promoter-TSS (ENSMUSG00000046671.18) -23 ENSMUSG00000046671.18 ENSMUSG00000046671 ENSMUST00000129836 Mtfr1l protein_coding Interval_74672 chr17 55841993 55842512 + 0 NA intron (ENSMUSG00000032915.6, intron 15 of 16) protein_coding-intron (ENSMUSG00000032915.6, intron 15 of 16) 8877 ENSMUSG00000093740.1 ENSMUSG00000093740 ENSMUST00000176564 Gm18417 unprocessed_pseudogene Interval_110685 chr4 6434472 6434806 + 0 NA intron (ENSMUSG00000028245.15, intron 5 of 5) protein_coding-intron (ENSMUSG00000028245.15, intron 6 of 30) 19457 ENSMUSG00000028245.15 ENSMUSG00000028245 ENSMUST00000124656 Nsmaf protein_coding Interval_123915 chr5 36505376 36505994 + 0 NA intron (ENSMUSG00000029192.17, intron 9 of 11) protein_coding-intron (ENSMUSG00000029192.17, intron 11 of 13) 1977 ENSMUSG00000029192.17 ENSMUSG00000029192 ENSMUST00000147603 Tbc1d14 protein_coding Interval_105612 chr3 88105986 88106609 + 0 NA promoter-TSS (ENSMUSG00000028068.14) protein_coding-promoter-TSS (ENSMUSG00000028068.14) 24269 ENSMUSG00000028068.14 ENSMUSG00000028068 ENSMUST00000194772 Iqgap3 protein_coding Interval_168752 chr9 86701579 86702571 + 0 NA TTS (ENSMUSG00000087466.3) antisense-TTS (ENSMUSG00000087466.3) -1744 ENSMUSG00000089373.1 ENSMUSG00000089373 ENSMUST00000158748 Gm22138 snoRNA Interval_28106 chr11 72876469 72876811 + 0 NA exon (ENSMUSG00000055670.14, exon 30 of 55) protein_coding-exon (ENSMUSG00000055670.14, exon 30 of 55) -5152 ENSMUSG00000065298.1 ENSMUSG00000065298 ENSMUST00000083364 Gm26121 snRNA Interval_142321 chr6 140632487 140632806 + 0 NA intron (ENSMUSG00000030232.18, intron 1 of 8) protein_coding-intron (ENSMUSG00000030232.18, intron 1 of 7) -4092 ENSMUSG00000030232.18 ENSMUSG00000030232 ENSMUST00000160772 Aebp2 protein_coding Interval_52015 chr14 34623930 34624176 + 0 NA Intergenic Intergenic -32214 ENSMUSG00000021799.9 ENSMUSG00000021799 ENSMUST00000022331 Opn4 protein_coding Interval_46429 chr13 65194430 65195187 + 0 NA TTS (ENSMUSG00000032999.10) protein_coding-TTS (ENSMUSG00000032999.10) 11135 ENSMUSG00000032999.10 ENSMUSG00000032999 ENSMUST00000222273 Nlrp4f protein_coding Interval_88576 chr2 6327204 6328387 + 0 NA intron (ENSMUSG00000039046.15, intron 1 of 6) protein_coding-intron (ENSMUSG00000039046.15, intron 1 of 14) -4715 ENSMUSG00000118578.1 ENSMUSG00000118578 ENSMUST00000238876 AL845275.1 protein_coding Interval_75607 chr17 69257834 69258097 + 0 NA intron (ENSMUSG00000024044.19, intron 10 of 21) protein_coding-intron (ENSMUSG00000024044.19, intron 10 of 21) 19243 ENSMUSG00000100572.1 ENSMUSG00000100572 ENSMUST00000187090 2410021H03Rik antisense Interval_136641 chr6 56879807 56881128 + 0 NA Intergenic Intergenic 26115 ENSMUSG00000108260.1 ENSMUSG00000108260 ENSMUST00000204973 Gm3793 TEC Interval_12278 chr1 191349592 191349925 + 0 NA exon (ENSMUSG00000026627.7, exon 8 of 8) protein_coding-exon (ENSMUSG00000026627.7, exon 8 of 8) 23846 ENSMUSG00000026627.7 ENSMUSG00000026627 ENSMUST00000027940 Pacc1 protein_coding Interval_3070 chr1 52877457 52877885 + 0 NA intron (ENSMUSG00000041426.12, intron 6 of 6) protein_coding-intron (ENSMUSG00000041426.12, intron 6 of 13) -3673 ENSMUSG00000089802.1 ENSMUSG00000089802 ENSMUST00000162523 Gm16107 processed_pseudogene Interval_98503 chr2 152827779 152828454 + 0 NA TTS (ENSMUSG00000007659.18) protein_coding-TTS (ENSMUSG00000007659.18) 419 ENSMUSG00000007659.18 ENSMUSG00000007659 ENSMUST00000156688 Bcl2l1 protein_coding Interval_148076 chr7 79080529 79081421 + 0 NA intron (ENSMUSG00000030607.7, intron 1 of 16) protein_coding-intron (ENSMUSG00000030607.7, intron 1 of 16) -18776 ENSMUSG00000030607.7 ENSMUSG00000030607 ENSMUST00000206779 Acan protein_coding Interval_103835 chr3 53501887 53502667 + 0 NA intron (ENSMUSG00000027744.4, intron 4 of 6) protein_coding-intron (ENSMUSG00000027744.4, intron 4 of 6) -6651 ENSMUSG00000105481.1 ENSMUSG00000105481 ENSMUST00000198286 6430500D05Rik TEC Interval_19814 chr10 109521447 109522458 + 0 NA Intergenic Intergenic -126827 ENSMUSG00000112260.1 ENSMUSG00000112260 ENSMUST00000219153 3110043J17Rik TEC Interval_141946 chr6 135713767 135715180 + 0 NA exon (ENSMUSG00000030209.14, exon 14 of 14) protein_coding-exon (ENSMUSG00000030209.14, exon 14 of 14) -18397 ENSMUSG00000086239.1 ENSMUSG00000086239 ENSMUST00000136027 Gm14329 lincRNA Interval_157111 chr8 65322334 65323864 + 0 NA Intergenic Intergenic -43912 ENSMUSG00000110226.1 ENSMUSG00000110226 ENSMUST00000209702 Gm7624 processed_pseudogene Interval_54688 chr14 73324933 73326532 + 0 NA promoter-TSS (ENSMUSG00000022105.6) protein_coding-promoter-TSS (ENSMUSG00000022105.6) -9360 ENSMUSG00000115573.1 ENSMUSG00000115573 ENSMUST00000226676 Gm49131 processed_pseudogene Interval_80064 chr18 37169513 37170357 + 0 NA intron (ENSMUSG00000097430.2, intron 1 of 3) protein_coding-intron (ENSMUSG00000103255.1, intron 3 of 3) 2629 ENSMUSG00000103456.1 ENSMUSG00000103456 ENSMUST00000192936 Gm38097 antisense Interval_127409 chr5 103775013 103775739 + 0 NA intron (ENSMUSG00000029313.18, intron 1 of 12) protein_coding-intron (ENSMUSG00000029313.18, intron 1 of 19) 20812 ENSMUSG00000029313.18 ENSMUSG00000029313 ENSMUST00000152145 Aff1 protein_coding Interval_3439 chr1 58366050 58368120 + 0 NA intron (ENSMUSG00000079554.2, intron 34 of 35) protein_coding-intron (ENSMUSG00000079554.2, intron 34 of 35) 19049 ENSMUSG00000103839.1 ENSMUSG00000103839 ENSMUST00000194925 Gm37607 TEC Interval_146697 chr7 49505767 49506574 + 0 NA intron (ENSMUSG00000052512.17, intron 11 of 38) protein_coding-intron (ENSMUSG00000052512.17, intron 11 of 37) 36458 ENSMUSG00000102148.1 ENSMUSG00000102148 ENSMUST00000193746 Gm38059 TEC Interval_87588 chr19 53596816 53597452 + 0 NA Intergenic Intergenic 2277 ENSMUSG00000118159.1 ENSMUSG00000118159 ENSMUST00000236407 Gm50402 TEC Interval_150395 chr7 110132079 110132870 + 0 NA intron (ENSMUSG00000031016.9, intron 6 of 10) protein_coding-intron (ENSMUSG00000031016.9, intron 6 of 10) 10428 ENSMUSG00000031016.9 ENSMUSG00000031016 ENSMUST00000033326 Wee1 protein_coding Interval_128491 chr5 113621815 113622029 + 0 NA intron (ENSMUSG00000042190.12, intron 1 of 2) protein_coding-intron (ENSMUSG00000042190.12, intron 1 of 2) -23041 ENSMUSG00000085713.1 ENSMUSG00000085713 ENSMUST00000141710 Gm15736 antisense Interval_27351 chr11 66898740 66900020 + 0 NA Intergenic Intergenic -12601 ENSMUSG00000048070.4 ENSMUSG00000048070 ENSMUST00000123434 Pirt protein_coding Interval_160175 chr8 106934388 106936691 + 0 NA promoter-TSS (ENSMUSG00000041308.6) protein_coding-promoter-TSS (ENSMUSG00000041308.6) -211 ENSMUSG00000041308.6 ENSMUSG00000041308 ENSMUST00000212298 Sntb2 protein_coding Interval_171273 chr9 115872664 115873240 + 0 NA Intergenic Intergenic -64190 ENSMUSG00000056880.12 ENSMUSG00000056880 ENSMUST00000121770 Gadl1 protein_coding Interval_102964 chr3 33822756 33823426 + 0 NA intron (ENSMUSG00000027676.11, intron 10 of 12) protein_coding-intron (ENSMUSG00000027676.11, intron 11 of 19) 3449 ENSMUSG00000027676.11 ENSMUSG00000027676 ENSMUST00000197230 Ccdc39 protein_coding Interval_10550 chr1 171761576 171762306 + 0 NA Intergenic Intergenic -5214 ENSMUSG00000015316.11 ENSMUSG00000015316 ENSMUST00000163992 Slamf1 protein_coding Interval_13152 chr10 12554285 12554845 + 0 NA intron (ENSMUSG00000019820.11, intron 51 of 74) protein_coding-intron (ENSMUSG00000019820.11, intron 50 of 73) -132969 ENSMUSG00000112816.1 ENSMUSG00000112816 ENSMUST00000220361 Gm48798 TEC Interval_163648 chr9 23082771 23084513 + 0 NA Intergenic Intergenic -139644 ENSMUSG00000031963.8 ENSMUSG00000031963 ENSMUST00000214050 Bmper protein_coding Interval_146563 chr7 46852794 46853841 + 0 NA intron (ENSMUSG00000063229.15, intron 6 of 7) protein_coding-intron (ENSMUSG00000063229.15, intron 6 of 7) 7461 ENSMUSG00000063229.15 ENSMUSG00000063229 ENSMUST00000210198 Ldha protein_coding Interval_84760 chr19 16347706 16348110 + 0 NA intron (ENSMUSG00000024639.5, intron 5 of 6) protein_coding-intron (ENSMUSG00000024639.5, intron 5 of 6) -32904 ENSMUSG00000098718.1 ENSMUSG00000098718 ENSMUST00000184935 Mir496b miRNA Interval_83086 chr18 81174810 81175099 + 0 NA Intergenic Intergenic 61112 ENSMUSG00000097181.1 ENSMUSG00000097181 ENSMUST00000181204 4930594M17Rik lincRNA Interval_160670 chr8 111501812 111502034 + 0 NA intron (ENSMUSG00000031959.15, intron 4 of 26) protein_coding-intron (ENSMUSG00000031959.15, intron 4 of 26) -11170 ENSMUSG00000031959.15 ENSMUSG00000031959 ENSMUST00000212327 Wdr59 protein_coding Interval_164487 chr9 37432160 37433662 + 0 NA exon (ENSMUSG00000032128.15, exon 1 of 28) protein_coding-exon (ENSMUSG00000032128.15, exon 1 of 28) -10308 ENSMUSG00000032128.15 ENSMUSG00000032128 ENSMUST00000167216 Robo3 protein_coding Interval_16768 chr10 68043800 68045407 + 0 NA TTS (ENSMUSG00000037846.18) protein_coding-TTS (ENSMUSG00000037846.18) -17977 ENSMUSG00000086838.1 ENSMUSG00000086838 ENSMUST00000143555 Gm16212 antisense Interval_77241 chr17 87530152 87532114 + 0 NA promoter-TSS (ENSMUSG00000117361.1) lincRNA-promoter-TSS (ENSMUSG00000117361.1) -389 ENSMUSG00000117361.1 ENSMUSG00000117361 ENSMUST00000234692 Gm30984 lincRNA Interval_165357 chr9 46575345 46575787 + 0 NA Intergenic Intergenic 12592 ENSMUSG00000077383.1 ENSMUSG00000077383 ENSMUST00000104195 Gm22659 snoRNA Interval_52530 chr14 47334963 47335168 + 0 NA Intergenic Intergenic -14009 ENSMUSG00000115728.1 ENSMUSG00000115728 ENSMUST00000227470 Gm49190 processed_pseudogene Interval_129505 chr5 120618505 120619501 + 0 NA promoter-TSS (ENSMUSG00000029599.13) protein_coding-promoter-TSS (ENSMUSG00000029599.13) 5876 ENSMUSG00000029599.13 ENSMUSG00000029599 ENSMUST00000201698 Ddx54 protein_coding Interval_90232 chr2 29171234 29171554 + 0 NA intron (ENSMUSG00000043535.13, intron 3 of 8) protein_coding-intron (ENSMUSG00000043535.13, intron 21 of 25) 45508 ENSMUSG00000043535.13 ENSMUSG00000043535 ENSMUST00000145422 Setx protein_coding Interval_144570 chr7 26120330 26120569 + 0 NA Intergenic Intergenic -20133 ENSMUSG00000108342.1 ENSMUSG00000108342 ENSMUST00000206876 Gm29920 processed_pseudogene Interval_155256 chr8 28975977 28976188 + 0 NA intron (ENSMUSG00000063626.6, intron 1 of 14) protein_coding-intron (ENSMUSG00000063626.6, intron 1 of 17) 111404 ENSMUSG00000109874.1 ENSMUSG00000109874 ENSMUST00000211467 Gm9911 TEC Interval_25567 chr11 49813148 49813785 + 0 NA intron (ENSMUSG00000020363.6, intron 6 of 18) protein_coding-intron (ENSMUSG00000020363.6, intron 6 of 18) 19288 ENSMUSG00000020363.6 ENSMUSG00000020363 ENSMUST00000020629 Gfpt2 protein_coding Interval_76176 chr17 76110953 76112443 + 0 NA promoter-TSS (ENSMUSG00000065293.1) misc_RNA-promoter-TSS (ENSMUSG00000065293.1) -394 ENSMUSG00000065293.1 ENSMUSG00000065293 ENSMUST00000083359 Gm26124 misc_RNA Interval_90105 chr2 28103838 28104166 + 0 NA intron (ENSMUSG00000086425.7, intron 2 of 3) lincRNA-intron (ENSMUSG00000086425.7, intron 2 of 7) 8519 ENSMUSG00000086425.7 ENSMUSG00000086425 ENSMUST00000128888 F730016J06Rik lincRNA Interval_62994 chr15 98543589 98545990 + 0 NA intron (ENSMUSG00000011960.12, intron 5 of 5) protein_coding-intron (ENSMUSG00000011960.12, intron 8 of 8) 9896 ENSMUSG00000011960.12 ENSMUSG00000011960 ENSMUST00000130921 Ccnt1 protein_coding Interval_161078 chr8 117333559 117335882 + 0 NA intron (ENSMUSG00000034390.16, intron 1 of 10) protein_coding-intron (ENSMUSG00000034390.16, intron 1 of 20) -88696 ENSMUSG00000034390.16 ENSMUSG00000034390 ENSMUST00000212884 Cmip protein_coding Interval_105854 chr3 89727141 89727727 + 0 NA intron (ENSMUSG00000027951.16, intron 1 of 1) protein_coding-intron (ENSMUSG00000027951.16, intron 1 of 14) 12412 ENSMUSG00000027951.16 ENSMUSG00000027951 ENSMUST00000131030 Adar protein_coding Interval_47303 chr13 80921273 80923378 + 0 NA Intergenic Intergenic -18086 ENSMUSG00000114554.1 ENSMUSG00000114554 ENSMUST00000224509 5430425K12Rik lincRNA Interval_159560 chr8 95466820 95467775 + 0 NA intron (ENSMUSG00000046707.9, intron 1 of 7) protein_coding-intron (ENSMUSG00000046707.9, intron 4 of 11) -1349 ENSMUSG00000110598.1 ENSMUSG00000110598 ENSMUST00000211857 Gm45854 TEC Interval_81015 chr18 52939205 52939391 + 0 NA Intergenic Intergenic -13251 ENSMUSG00000118195.1 ENSMUSG00000118195 ENSMUST00000235787 Gm8572 processed_pseudogene Interval_52994 chr14 53042017 53042263 + 0 NA promoter-TSS (ENSMUSG00000076795.6) TR_V_gene-promoter-TSS (ENSMUSG00000076795.6) -288 ENSMUSG00000076795.6 ENSMUSG00000076795 ENSMUST00000103605 Trav8d-2 TR_V_gene Interval_90544 chr2 31077561 31077850 + 0 NA intron (ENSMUSG00000075415.13, intron 4 of 5) protein_coding-intron (ENSMUSG00000075415.13, intron 6 of 13) 38607 ENSMUSG00000075415.13 ENSMUSG00000075415 ENSMUST00000136085 Fnbp1 protein_coding Interval_51348 chr14 26602031 26602651 + 0 NA intron (ENSMUSG00000040818.10, intron 5 of 15) protein_coding-intron (ENSMUSG00000040818.10, intron 5 of 19) -2330 ENSMUSG00000040818.10 ENSMUSG00000040818 ENSMUST00000225206 Dennd6a protein_coding Interval_97110 chr2 131299297 131299521 + 0 NA TTS (ENSMUSG00000037514.17) protein_coding-TTS (ENSMUSG00000037514.17) 864 ENSMUSG00000086329.1 ENSMUSG00000086329 ENSMUST00000149576 Gm14233 processed_transcript Interval_85052 chr19 21817876 21819113 + 0 NA intron (ENSMUSG00000024754.13, intron 13 of 24) protein_coding-intron (ENSMUSG00000024754.13, intron 12 of 23) 15262 ENSMUSG00000118021.1 ENSMUSG00000118021 ENSMUST00000237423 Gm50130 antisense Interval_42310 chr13 11959799 11960197 + 0 NA intron (ENSMUSG00000021313.16, intron 1 of 2) protein_coding-intron (ENSMUSG00000021313.16, intron 1 of 104) 20440 ENSMUSG00000098110.1 ENSMUSG00000098110 ENSMUST00000182176 Gm26956 processed_pseudogene Interval_140723 chr6 120883586 120883907 + 0 NA intron (ENSMUSG00000009112.4, intron 6 of 6) protein_coding-intron (ENSMUSG00000009112.4, intron 6 of 6) 13822 ENSMUSG00000004446.12 ENSMUSG00000004446 ENSMUST00000125915 Bid protein_coding Interval_117459 chr4 123859026 123859336 + 0 NA promoter-TSS (ENSMUSG00000073761.2) lincRNA-promoter-TSS (ENSMUSG00000073761.2) 332 ENSMUSG00000086275.1 ENSMUSG00000086275 ENSMUST00000137546 1700121C08Rik antisense Interval_154819 chr8 23682364 23684100 + 0 NA intron (ENSMUSG00000037492.16, intron 1 of 7) protein_coding-intron (ENSMUSG00000037492.16, intron 1 of 6) -12773 ENSMUSG00000109413.1 ENSMUSG00000109413 ENSMUST00000207763 Gm45165 TEC Interval_119320 chr4 136855181 136856008 + 0 NA Intergenic Intergenic 30593 ENSMUSG00000036905.8 ENSMUSG00000036905 ENSMUST00000046384 C1qb protein_coding Interval_148101 chr7 79226659 79227210 + 0 NA Intergenic Intergenic 45877 ENSMUSG00000108387.1 ENSMUSG00000108387 ENSMUST00000206434 Gm31510 bidirectional_promoter_lncRNA Interval_22849 chr11 16675791 16676740 + 0 NA Intergenic Intergenic -30727 ENSMUSG00000076337.1 ENSMUSG00000076337 ENSMUST00000102382 Gm24714 miRNA Interval_20256 chr10 116472843 116474546 + 0 NA promoter-TSS (ENSMUSG00000054934.10) protein_coding-promoter-TSS (ENSMUSG00000054934.10) -259 ENSMUSG00000054934.10 ENSMUSG00000054934 ENSMUST00000087965 Kcnmb4 protein_coding Interval_12837 chr10 6035931 6036394 + 0 NA Intergenic Intergenic -113776 ENSMUSG00000019775.17 ENSMUSG00000019775 ENSMUST00000019909 Rgs17 protein_coding Interval_71624 chr17 24944596 24944936 + 0 NA intron (ENSMUSG00000024165.9, intron 4 of 5) protein_coding-intron (ENSMUSG00000024165.9, intron 4 of 4) -7789 ENSMUSG00000024163.17 ENSMUSG00000024163 ENSMUST00000148360 Mapk8ip3 protein_coding Interval_166605 chr9 61277757 61278061 + 0 NA intron (ENSMUSG00000111658.1, intron 3 of 4) lincRNA-intron (ENSMUSG00000111658.1, intron 3 of 4) 15900 ENSMUSG00000111658.1 ENSMUSG00000111658 ENSMUST00000213377 B930092H01Rik lincRNA Interval_57961 chr15 25753575 25755265 + 0 NA intron (ENSMUSG00000022272.17, intron 1 of 20) protein_coding-intron (ENSMUSG00000022272.17, intron 1 of 20) -14136 ENSMUSG00000022272.17 ENSMUSG00000022272 ENSMUST00000145587 Myo10 protein_coding Interval_112636 chr4 43724912 43725183 + 0 NA Intergenic Intergenic -2141 ENSMUSG00000071001.4 ENSMUSG00000071001 ENSMUST00000095109 Hrct1 protein_coding Interval_164263 chr9 34721686 34722913 + 0 NA intron (ENSMUSG00000032036.15, intron 1 of 15) protein_coding-intron (ENSMUSG00000032036.15, intron 1 of 16) 200544 ENSMUSG00000103552.1 ENSMUSG00000103552 ENSMUST00000194358 Gm38217 TEC Interval_60604 chr15 75632128 75632800 + 0 NA exon (ENSMUSG00000115969.1, exon 2 of 2) lincRNA-exon (ENSMUSG00000115969.1, exon 2 of 2) 3446 ENSMUSG00000115969.1 ENSMUSG00000115969 ENSMUST00000229763 Gm46519 lincRNA Interval_169079 chr9 91841532 91841921 + 0 NA Intergenic Intergenic 1956 ENSMUSG00000087871.1 ENSMUSG00000087871 ENSMUST00000157246 Gm26101 snRNA Interval_77390 chr17 88380785 88381539 + 0 NA intron (ENSMUSG00000117351.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000117351.1, intron 1 of 1) 7537 ENSMUSG00000117351.1 ENSMUSG00000117351 ENSMUST00000234514 Gm31615 lincRNA Interval_27483 chr11 68142262 68143043 + 0 NA intron (ENSMUSG00000020903.13, intron 6 of 6) protein_coding-intron (ENSMUSG00000020903.13, intron 7 of 7) -46688 ENSMUSG00000083924.1 ENSMUSG00000083924 ENSMUST00000120312 Gm12304 processed_pseudogene Interval_156899 chr8 61549414 61550661 + 0 NA exon (ENSMUSG00000058056.16, exon 2 of 12) protein_coding-exon (ENSMUSG00000058056.16, exon 2 of 12) -34137 ENSMUSG00000058056.16 ENSMUSG00000058056 ENSMUST00000123523 Palld protein_coding Interval_49328 chr13 111013393 111013599 + 0 NA Intergenic Intergenic 5325 ENSMUSG00000114747.1 ENSMUSG00000114747 ENSMUST00000223653 Gm48547 processed_pseudogene Interval_86703 chr19 42767060 42767748 + 0 NA intron (ENSMUSG00000025188.15, intron 4 of 15) protein_coding-intron (ENSMUSG00000025188.15, intron 5 of 18) 10859 ENSMUSG00000025188.15 ENSMUSG00000025188 ENSMUST00000161761 Hps1 protein_coding Interval_129045 chr5 117069312 117070128 + 0 NA Intergenic Intergenic 10908 ENSMUSG00000107327.1 ENSMUSG00000107327 ENSMUST00000201054 Gm7478 processed_pseudogene Interval_127156 chr5 100679831 100680850 + 0 NA exon (ENSMUSG00000035273.14, exon 12 of 12) protein_coding-exon (ENSMUSG00000035273.14, exon 12 of 12) 9481 ENSMUSG00000085269.1 ENSMUSG00000085269 ENSMUST00000123463 Gm15777 antisense Interval_140781 chr6 121299969 121300531 + 0 NA promoter-TSS (ENSMUSG00000030108.14) protein_coding-promoter-TSS (ENSMUSG00000030108.14) -532 ENSMUSG00000030108.14 ENSMUSG00000030108 ENSMUST00000142419 Slc6a13 protein_coding Interval_168767 chr9 86789049 86789349 + 0 NA intron (ENSMUSG00000033419.16, intron 13 of 19) protein_coding-intron (ENSMUSG00000033419.16, intron 22 of 28) -2344 ENSMUSG00000103891.1 ENSMUSG00000103891 ENSMUST00000192170 Gm37941 TEC Interval_91654 chr2 45788016 45788467 + 0 NA Intergenic Intergenic -21231 ENSMUSG00000083807.1 ENSMUSG00000083807 ENSMUST00000121515 Gm13466 processed_pseudogene Interval_39745 chr12 96510540 96511799 + 0 NA Intergenic Intergenic -151145 ENSMUSG00000112040.1 ENSMUSG00000112040 ENSMUST00000218365 Gm47396 lincRNA Interval_133440 chr6 5032448 5033835 + 0 NA intron (ENSMUSG00000032827.15, intron 1 of 17) protein_coding-intron (ENSMUSG00000032827.15, intron 2 of 15) 74158 ENSMUSG00000097396.1 ENSMUSG00000097396 ENSMUST00000180645 Gm26556 TEC Interval_98146 chr2 148751952 148752855 + 0 NA intron (ENSMUSG00000055177.15, intron 2 of 3) protein_coding-intron (ENSMUSG00000055177.15, intron 2 of 3) 2045 ENSMUSG00000055177.15 ENSMUSG00000055177 ENSMUST00000109952 Cstl1 protein_coding Interval_165164 chr9 44928478 44928919 + 0 NA intron (ENSMUSG00000059890.16, intron 19 of 19) protein_coding-intron (ENSMUSG00000059890.16, intron 19 of 19) 8499 ENSMUSG00000111082.1 ENSMUSG00000111082 ENSMUST00000215803 Gm30934 antisense Interval_100960 chr2 173644825 173645203 + 0 NA intron (ENSMUSG00000055897.13, intron 2 of 14) transcribed_unprocessed_pseudogene-intron (ENSMUSG00000055897.13, intron 1 of 1) -14746 ENSMUSG00000027519.10 ENSMUSG00000027519 ENSMUST00000109110 Rab22a protein_coding Interval_121190 chr4 153913767 153914190 + 0 NA Intergenic Intergenic 6592 ENSMUSG00000085390.1 ENSMUSG00000085390 ENSMUST00000156438 Gm13115 lincRNA Interval_153435 chr7 144780929 144781792 + 0 NA Intergenic Intergenic 10448 ENSMUSG00000109442.1 ENSMUSG00000109442 ENSMUST00000207398 Gm34964 lincRNA Interval_29092 chr11 80274975 80275461 + 0 NA Intergenic Intergenic 20517 ENSMUSG00000017686.17 ENSMUSG00000017686 ENSMUST00000236882 Rhot1 protein_coding Interval_87975 chr19 57493797 57494380 + 0 NA Intergenic Intergenic -14476 ENSMUSG00000117655.1 ENSMUSG00000117655 ENSMUST00000234605 6720468P15Rik lincRNA Interval_127988 chr5 110107023 110108428 + 0 NA promoter-TSS (ENSMUSG00000033434.15) protein_coding-promoter-TSS (ENSMUSG00000033434.15) -549 ENSMUSG00000033434.15 ENSMUSG00000033434 ENSMUST00000149227 Gtpbp6 protein_coding Interval_113058 chr4 47264487 47264750 + 0 NA intron (ENSMUSG00000028339.17, intron 11 of 39) protein_coding-intron (ENSMUSG00000028339.17, intron 11 of 38) 6083 ENSMUSG00000028339.17 ENSMUSG00000028339 ENSMUST00000107730 Col15a1 protein_coding Interval_166518 chr9 60330985 60331440 + 0 NA intron (ENSMUSG00000032289.15, intron 5 of 16) protein_coding-intron (ENSMUSG00000032289.15, intron 6 of 17) -2930 ENSMUSG00000111296.1 ENSMUSG00000111296 ENSMUST00000214235 2010001M07Rik antisense Interval_148958 chr7 90401545 90402413 + 0 NA intron (ENSMUSG00000030616.16, intron 15 of 18) protein_coding-intron (ENSMUSG00000030616.16, intron 9 of 12) -24598 ENSMUSG00000044362.8 ENSMUSG00000044362 ENSMUST00000061391 Ccdc89 protein_coding Interval_133262 chr5 150926186 150927168 + 0 NA Intergenic Intergenic -26027 ENSMUSG00000058488.7 ENSMUSG00000058488 ENSMUST00000202096 Kl protein_coding Interval_123951 chr5 36829697 36831521 + 0 NA promoter-TSS (ENSMUSG00000029119.9) protein_coding-promoter-TSS (ENSMUSG00000029119.9) -17646 ENSMUSG00000029119.9 ENSMUSG00000029119 ENSMUST00000124711 Man2b2 protein_coding Interval_51832 chr14 32586949 32587609 + 0 NA Intergenic Intergenic -8054 ENSMUSG00000115281.1 ENSMUSG00000115281 ENSMUST00000226540 Gm49743 TEC Interval_14474 chr10 34171641 34171836 + 0 NA intron (ENSMUSG00000039497.8, intron 2 of 2) protein_coding-intron (ENSMUSG00000039497.8, intron 2 of 5) 4507 ENSMUSG00000039497.8 ENSMUSG00000039497 ENSMUST00000216194 Dse protein_coding Interval_136524 chr6 55158911 55160020 + 0 NA intron (ENSMUSG00000108285.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000108285.1, intron 1 of 2) 5006 ENSMUSG00000108285.1 ENSMUSG00000108285 ENSMUST00000204585 Gm34358 lincRNA Interval_102687 chr3 30015169 30015840 + 0 NA exon (ENSMUSG00000027684.16, exon 3 of 3) protein_coding-exon (ENSMUSG00000027684.16, exon 3 of 3) -2024 ENSMUSG00000085702.8 ENSMUSG00000085702 ENSMUST00000173827 Mecomos antisense Interval_8855 chr1 151568686 151569387 + 0 NA Intergenic Intergenic -2337 ENSMUSG00000026483.13 ENSMUSG00000026483 ENSMUST00000086267 Fam129a protein_coding Interval_45940 chr13 59494326 59495148 + 0 NA intron (ENSMUSG00000021557.15, intron 17 of 17) protein_coding-intron (ENSMUSG00000021557.15, intron 17 of 25) -29449 ENSMUSG00000021557.15 ENSMUSG00000021557 ENSMUST00000163284 Agtpbp1 protein_coding Interval_9796 chr1 162436670 162436914 + 0 NA intron (ENSMUSG00000040265.16, intron 1 of 5) protein_coding-intron (ENSMUSG00000040265.16, intron 1 of 19) -29457 ENSMUSG00000040265.16 ENSMUSG00000040265 ENSMUST00000195768 Dnm3 protein_coding Interval_80606 chr18 44573429 44573839 + 0 NA intron (ENSMUSG00000071856.10, intron 3 of 18) protein_coding-intron (ENSMUSG00000071856.10, intron 3 of 18) -88469 ENSMUSG00000097610.2 ENSMUSG00000097610 ENSMUST00000202771 A930012L18Rik antisense Interval_76696 chr17 83552492 83553710 + 0 NA Intergenic Intergenic -48595 ENSMUSG00000024248.14 ENSMUSG00000024248 ENSMUST00000234258 Cox7a2l protein_coding Interval_30234 chr11 91357107 91357568 + 0 NA Intergenic Intergenic 220221 ENSMUSG00000046755.5 ENSMUSG00000046755 ENSMUST00000061019 Kif2b protein_coding Interval_172875 chrX 52651274 52652283 + 0 NA Intergenic Intergenic -37828 ENSMUSG00000055653.13 ENSMUSG00000055653 ENSMUST00000114857 Gpc3 protein_coding Interval_153593 chr8 3587202 3588787 + 0 NA promoter-TSS (ENSMUSG00000044433.16) protein_coding-promoter-TSS (ENSMUSG00000044433.16) 182 ENSMUSG00000044433.16 ENSMUSG00000044433 ENSMUST00000207152 Camsap3 protein_coding Interval_24774 chr11 37293438 37293817 + 0 NA Intergenic Intergenic -349461 ENSMUSG00000049336.16 ENSMUSG00000049336 ENSMUST00000157030 Tenm2 protein_coding Interval_143947 chr7 18391112 18392163 + 0 NA Intergenic Intergenic 9228 ENSMUSG00000109209.1 ENSMUSG00000109209 ENSMUST00000208748 Gm45104 TEC Interval_141768 chr6 134337805 134338715 + 0 NA intron (ENSMUSG00000107666.1, intron 3 of 8) antisense-intron (ENSMUSG00000107666.1, intron 3 of 8) -60380 ENSMUSG00000030200.13 ENSMUSG00000030200 ENSMUST00000142612 Bcl2l14 protein_coding Interval_134367 chr6 26897821 26899147 + 0 NA Intergenic Intergenic 68067 ENSMUSG00000106742.1 ENSMUSG00000106742 ENSMUST00000201073 Gm42474 processed_pseudogene Interval_107686 chr3 110822516 110822697 + 0 NA Intergenic Intergenic 188283 ENSMUSG00000106650.1 ENSMUSG00000106650 ENSMUST00000200424 Gm43404 TEC Interval_122190 chr5 19258711 19259024 + 0 NA intron (ENSMUSG00000040003.18, intron 1 of 2) protein_coding-intron (ENSMUSG00000040003.18, intron 1 of 22) -32699 ENSMUSG00000097626.5 ENSMUSG00000097626 ENSMUST00000197496 4921504A21Rik antisense Interval_122162 chr5 18459573 18459806 + 0 NA Intergenic Intergenic 30505 ENSMUSG00000104718.1 ENSMUSG00000104718 ENSMUST00000199456 Gm31752 lincRNA Interval_96002 chr2 119106723 119107033 + 0 NA Intergenic Intergenic -24640 ENSMUSG00000027323.10 ENSMUSG00000027323 ENSMUST00000143934 Rad51 protein_coding Interval_155237 chr8 28530006 28530367 + 0 NA promoter-TSS (ENSMUSG00000109794.1) lincRNA-promoter-TSS (ENSMUSG00000109794.1) -469 ENSMUSG00000109794.1 ENSMUSG00000109794 ENSMUST00000209671 Gm45571 lincRNA Interval_160503 chr8 110089470 110089673 + 0 NA exon (ENSMUSG00000044676.10, exon 5 of 5) protein_coding-exon (ENSMUSG00000044676.10, exon 5 of 5) 9825 ENSMUSG00000044676.10 ENSMUSG00000044676 ENSMUST00000058804 Zfp612 protein_coding Interval_40693 chr12 107408055 107408889 + 0 NA Intergenic Intergenic -10669 ENSMUSG00000090607.1 ENSMUSG00000090607 ENSMUST00000165496 Gm17052 processed_pseudogene Interval_111359 chr4 19654760 19655380 + 0 NA intron (ENSMUSG00000041058.15, intron 8 of 24) protein_coding-intron (ENSMUSG00000041058.15, intron 6 of 22) 49619 ENSMUSG00000078772.2 ENSMUSG00000078772 ENSMUST00000108250 Gm12353 protein_coding Interval_22614 chr11 12291095 12292626 + 0 NA intron (ENSMUSG00000020173.17, intron 4 of 4) protein_coding-intron (ENSMUSG00000020173.17, intron 9 of 14) -30415 ENSMUSG00000086584.8 ENSMUSG00000086584 ENSMUST00000174550 Gm12002 antisense Interval_24651 chr11 35647835 35648515 + 0 NA intron (ENSMUSG00000056427.10, intron 20 of 35) protein_coding-intron (ENSMUSG00000056427.10, intron 20 of 35) 31359 ENSMUSG00000065583.1 ENSMUSG00000065583 ENSMUST00000083649 Mir218-2 miRNA Interval_112828 chr4 45336333 45336628 + 0 NA intron (ENSMUSG00000028322.11, intron 1 of 3) protein_coding-intron (ENSMUSG00000028322.11, intron 1 of 3) 2554 ENSMUSG00000083541.1 ENSMUSG00000083541 ENSMUST00000117307 Gm12585 processed_pseudogene Interval_153125 chr7 141505069 141506917 + 0 NA intron (ENSMUSG00000025512.15, intron 9 of 12) protein_coding-intron (ENSMUSG00000025512.15, intron 8 of 10) 12610 ENSMUSG00000110400.1 ENSMUSG00000110400 ENSMUST00000209713 Gm45416 TEC Interval_22186 chr11 6923761 6925305 + 0 NA Intergenic Intergenic -62229 ENSMUSG00000082333.1 ENSMUSG00000082333 ENSMUST00000118142 Gm11984 processed_pseudogene Interval_11765 chr1 185283024 185283779 + 0 NA exon (ENSMUSG00000039318.12, exon 34 of 35) protein_coding-exon (ENSMUSG00000039318.12, exon 34 of 35) 5603 ENSMUSG00000039318.12 ENSMUSG00000039318 ENSMUST00000195534 Rab3gap2 protein_coding Interval_33072 chr11 114184803 114186973 + 0 NA TTS (ENSMUSG00000086135.1) antisense-TTS (ENSMUSG00000086135.1) 889 ENSMUSG00000086135.1 ENSMUSG00000086135 ENSMUST00000126577 1700001J04Rik antisense Interval_46832 chr13 71942925 71943173 + 0 NA intron (ENSMUSG00000114038.1, intron 1 of 7) processed_transcript-intron (ENSMUSG00000114038.1, intron 1 of 7) 17667 ENSMUSG00000060969.9 ENSMUSG00000060969 ENSMUST00000223460 Irx1 protein_coding Interval_102518 chr3 27440249 27440708 + 0 NA intron (ENSMUSG00000039286.12, intron 23 of 26) protein_coding-intron (ENSMUSG00000039286.12, intron 22 of 25) 69127 ENSMUSG00000051136.1 ENSMUSG00000051136 ENSMUST00000057186 Ghsr protein_coding Interval_73822 chr17 44151154 44152003 + 0 NA intron (ENSMUSG00000023959.10, intron 1 of 5) protein_coding-intron (ENSMUSG00000023959.10, intron 1 of 5) 16810 ENSMUSG00000023959.10 ENSMUSG00000023959 ENSMUST00000233193 Clic5 protein_coding Interval_153030 chr7 140973280 140974180 + 0 NA Intergenic Intergenic 6509 ENSMUSG00000025491.14 ENSMUSG00000025491 ENSMUST00000026564 Ifitm1 protein_coding Interval_30752 chr11 96277834 96278042 + 0 NA Intergenic Intergenic -4787 ENSMUSG00000056648.5 ENSMUSG00000056648 ENSMUST00000168043 Hoxb8 protein_coding Interval_126011 chr5 76828729 76829484 + 0 NA intron (ENSMUSG00000036377.19, intron 4 of 11) protein_coding-intron (ENSMUSG00000036377.19, intron 2 of 3) 65972 ENSMUSG00000055923.16 ENSMUSG00000055923 ENSMUST00000134805 Aasdh protein_coding Interval_114089 chr4 63344675 63345254 + 0 NA intron (ENSMUSG00000039196.2, intron 1 of 5) protein_coding-intron (ENSMUSG00000039196.2, intron 1 of 5) 404 ENSMUSG00000039196.2 ENSMUSG00000039196 ENSMUST00000030044 Orm1 protein_coding Interval_69533 chr16 94075377 94076347 + 0 NA Intergenic Intergenic 8004 ENSMUSG00000116569.1 ENSMUSG00000116569 ENSMUST00000231710 Gm49620 bidirectional_promoter_lncRNA Interval_18239 chr10 84097037 84097730 + 0 NA intron (ENSMUSG00000111049.1, intron 1 of 4) lincRNA-intron (ENSMUSG00000111049.1, intron 1 of 4) 3314 ENSMUSG00000111049.1 ENSMUSG00000111049 ENSMUST00000216477 Gm34184 lincRNA Interval_6350 chr1 106171263 106173303 + 0 NA promoter-TSS (ENSMUSG00000101583.1) lincRNA-promoter-TSS (ENSMUSG00000101583.1) -759 ENSMUSG00000101583.1 ENSMUSG00000101583 ENSMUST00000190105 Gm20753 lincRNA Interval_78585 chr18 14917062 14917357 + 0 NA Intergenic Intergenic 6902 ENSMUSG00000117436.1 ENSMUSG00000117436 ENSMUST00000234412 Gm9474 processed_pseudogene Interval_90058 chr2 27584641 27584845 + 0 NA Intergenic Intergenic 44317 ENSMUSG00000085929.1 ENSMUSG00000085929 ENSMUST00000132898 Gm13421 processed_transcript Interval_119854 chr4 140514558 140514764 + 0 NA exon (ENSMUSG00000040964.16, exon 28 of 28) protein_coding-exon (ENSMUSG00000040964.16, exon 28 of 28) -68497 ENSMUSG00000118416.1 ENSMUSG00000118416 ENSMUST00000238366 Gm50453 unitary_pseudogene Interval_58776 chr15 38011491 38012475 + 0 NA promoter-TSS (ENSMUSG00000037487.7) protein_coding-promoter-TSS (ENSMUSG00000037487.7) -41368 ENSMUSG00000037487.7 ENSMUSG00000037487 ENSMUST00000227143 Ubr5 protein_coding Interval_29320 chr11 82907564 82908905 + 0 NA promoter-TSS (ENSMUSG00000020692.14) protein_coding-promoter-TSS (ENSMUSG00000020692.14) -3019 ENSMUSG00000018845.14 ENSMUSG00000018845 ENSMUST00000142336 Unc45b protein_coding Interval_44689 chr13 47168254 47169261 + 0 NA intron (ENSMUSG00000038068.15, intron 1 of 7) protein_coding-intron (ENSMUSG00000038068.15, intron 1 of 7) -13749 ENSMUSG00000114882.1 ENSMUSG00000114882 ENSMUST00000225219 Gm48581 TEC Interval_99929 chr2 165967592 165970500 + 0 NA Intergenic Intergenic 9257 ENSMUSG00000082924.1 ENSMUSG00000082924 ENSMUST00000117749 Gm11462 processed_pseudogene Interval_53492 chr14 57816011 57817033 + 0 NA intron (ENSMUSG00000021965.3, intron 5 of 6) protein_coding-intron (ENSMUSG00000021965.3, intron 5 of 8) 9586 ENSMUSG00000021965.3 ENSMUSG00000021965 ENSMUST00000223726 Ska3 protein_coding Interval_86255 chr19 38124053 38125221 + 0 NA promoter-TSS (ENSMUSG00000024990.13) protein_coding-promoter-TSS (ENSMUSG00000024990.13) 644 ENSMUSG00000024990.13 ENSMUSG00000024990 ENSMUST00000237287 Rbp4 protein_coding Interval_150531 chr7 112110307 112111179 + 0 NA TTS (ENSMUSG00000059263.9) protein_coding-TTS (ENSMUSG00000059263.9) 48314 ENSMUSG00000030772.6 ENSMUSG00000030772 ENSMUST00000033036 Dkk3 protein_coding Interval_168544 chr9 83431366 83432540 + 0 NA intron (ENSMUSG00000099718.1, intron 1 of 2) protein_coding-intron (ENSMUSG00000032258.15, intron 1 of 7) 406 ENSMUSG00000099718.1 ENSMUSG00000099718 ENSMUST00000188217 Gm2087 antisense Interval_123652 chr5 34286632 34288910 + 0 NA promoter-TSS (ENSMUSG00000109572.1) protein_coding-promoter-TSS (ENSMUSG00000109572.1) -829 ENSMUSG00000109572.1 ENSMUSG00000109572 ENSMUST00000207754 Cfap99 protein_coding Interval_47038 chr13 74591089 74592160 + 0 NA intron (ENSMUSG00000113204.1, intron 6 of 10) lincRNA-intron (ENSMUSG00000113204.1, intron 6 of 10) 18410 ENSMUSG00000113204.1 ENSMUSG00000113204 ENSMUST00000222064 Gm46430 lincRNA Interval_151424 chr7 122267955 122268557 + 0 NA Intergenic Intergenic 3162 ENSMUSG00000064532.1 ENSMUSG00000064532 ENSMUST00000082598 Gm23614 snRNA Interval_66608 chr16 35605130 35606267 + 0 NA intron (ENSMUSG00000052133.16, intron 1 of 5) protein_coding-intron (ENSMUSG00000052133.16, intron 1 of 21) -32142 ENSMUSG00000052192.5 ENSMUSG00000052192 ENSMUST00000143451 Gm5963 processed_pseudogene Interval_7014 chr1 122083143 122083373 + 0 NA Intergenic Intergenic -106963 ENSMUSG00000100913.1 ENSMUSG00000100913 ENSMUST00000185647 Gm8392 processed_pseudogene Interval_90260 chr2 29385442 29385955 + 0 NA intron (ENSMUSG00000026799.15, intron 2 of 4) protein_coding-intron (ENSMUSG00000026799.15, intron 2 of 7) 10761 ENSMUSG00000086994.1 ENSMUSG00000086994 ENSMUST00000153600 Gm13402 antisense Interval_140989 chr6 123910778 123911137 + 0 NA Intergenic Intergenic 24561 ENSMUSG00000108240.1 ENSMUSG00000108240 ENSMUST00000204445 Gm5317 processed_pseudogene Interval_169884 chr9 102729387 102730275 + 0 NA promoter-TSS (ENSMUSG00000032531.15) protein_coding-promoter-TSS (ENSMUSG00000032531.15) -9817 ENSMUSG00000093812.1 ENSMUSG00000093812 ENSMUST00000178539 Gm5627 lincRNA Interval_173493 chrX 95950953 95951255 + 0 NA promoter-TSS (ENSMUSG00000057421.12) protein_coding-promoter-TSS (ENSMUSG00000057421.12) -2901 ENSMUSG00000057421.12 ENSMUSG00000057421 ENSMUST00000139717 Las1l protein_coding Interval_42790 chr13 19569104 19570851 + 0 NA Intergenic Intergenic 43990 ENSMUSG00000113251.1 ENSMUSG00000113251 ENSMUST00000221671 Gm18363 processed_pseudogene Interval_34903 chr12 13207995 13208228 + 0 NA Intergenic Intergenic 41052 ENSMUSG00000037149.10 ENSMUSG00000037149 ENSMUST00000221623 Ddx1 protein_coding Interval_56868 chr14 122594984 122595158 + 0 NA intron (ENSMUSG00000041650.15, intron 2 of 8) protein_coding-intron (ENSMUSG00000041650.15, intron 6 of 23) 12387 ENSMUSG00000041650.15 ENSMUSG00000041650 ENSMUST00000138836 Pcca protein_coding Interval_101101 chr2 177953455 177954121 + 0 NA promoter-TSS (ENSMUSG00000078862.10) protein_coding-promoter-TSS (ENSMUSG00000078862.10) -104 ENSMUSG00000078862.10 ENSMUSG00000078862 ENSMUST00000108928 Gm14326 protein_coding Interval_96673 chr2 127053111 127053564 + 0 NA intron (ENSMUSG00000001998.15, intron 14 of 15) protein_coding-intron (ENSMUSG00000001998.15, intron 15 of 20) 12776 ENSMUSG00000092918.1 ENSMUSG00000092918 ENSMUST00000175177 Gm24081 miRNA Interval_76293 chr17 78808979 78809288 + 0 NA intron (ENSMUSG00000039414.10, intron 17 of 26) protein_coding-intron (ENSMUSG00000039414.10, intron 17 of 35) -34461 ENSMUSG00000050668.10 ENSMUSG00000050668 ENSMUST00000233913 Gpatch11 protein_coding Interval_152680 chr7 136180362 136180740 + 0 NA Intergenic Intergenic -7255 ENSMUSG00000110396.1 ENSMUSG00000110396 ENSMUST00000209653 Gm36737 lincRNA Interval_169965 chr9 103288012 103288963 + 0 NA promoter-TSS (ENSMUSG00000033688.10) protein_coding-promoter-TSS (ENSMUSG00000033688.10) -22262 ENSMUSG00000033688.10 ENSMUSG00000033688 ENSMUST00000142540 1300017J02Rik protein_coding Interval_44466 chr13 45001074 45002613 + 0 NA promoter-TSS (ENSMUSG00000057531.14) protein_coding-promoter-TSS (ENSMUSG00000057531.14) 209 ENSMUSG00000057531.14 ENSMUSG00000057531 ENSMUST00000223524 Dtnbp1 protein_coding Interval_97291 chr2 133156273 133156744 + 0 NA Intergenic Intergenic -43103 ENSMUSG00000083689.1 ENSMUSG00000083689 ENSMUST00000117717 Gm14094 processed_pseudogene Interval_138432 chr6 88151469 88153345 + 0 NA Intergenic Intergenic 38274 ENSMUSG00000108010.1 ENSMUSG00000108010 ENSMUST00000203855 Gm38708 lincRNA Interval_163423 chr9 21382580 21382828 + 0 NA intron (ENSMUSG00000032178.14, intron 1 of 20) protein_coding-intron (ENSMUSG00000032178.14, intron 1 of 19) -5848 ENSMUSG00000032178.14 ENSMUSG00000032178 ENSMUST00000214200 Ilf3 protein_coding Interval_74658 chr17 54661632 54661984 + 0 NA Intergenic Intergenic 9872 ENSMUSG00000089514.1 ENSMUSG00000089514 ENSMUST00000158889 Gm26291 snoRNA Interval_42561 chr13 15476411 15476828 + 0 NA intron (ENSMUSG00000021318.15, intron 1 of 9) protein_coding-intron (ENSMUSG00000021318.15, intron 1 of 14) -12883 ENSMUSG00000097806.3 ENSMUSG00000097806 ENSMUST00000193256 Gm6556 processed_transcript Interval_9393 chr1 156760419 156761151 + 0 NA Intergenic Intergenic -32727 ENSMUSG00000046057.4 ENSMUSG00000046057 ENSMUST00000121352 Gm15428 processed_pseudogene Interval_89643 chr2 23937893 23939491 + 0 NA Intergenic Intergenic 30251 ENSMUSG00000083373.1 ENSMUSG00000083373 ENSMUST00000117708 Gm13392 processed_pseudogene Interval_71045 chr17 17402063 17403039 + 0 NA promoter-TSS (ENSMUSG00000047786.12) protein_coding-promoter-TSS (ENSMUSG00000047786.12) 9442 ENSMUSG00000097379.2 ENSMUSG00000097379 ENSMUST00000181390 Gm26873 antisense Interval_145189 chr7 30540195 30541562 + 0 NA intron (ENSMUSG00000036864.16, intron 9 of 11) protein_coding-intron (ENSMUSG00000036864.16, intron 7 of 9) 1212 ENSMUSG00000109102.1 ENSMUSG00000109102 ENSMUST00000208842 1700019A23Rik TEC Interval_43177 chr13 24866639 24868094 + 0 NA intron (ENSMUSG00000006711.15, intron 8 of 19) protein_coding-intron (ENSMUSG00000006711.15, intron 8 of 20) -25715 ENSMUSG00000006711.15 ENSMUSG00000006711 ENSMUST00000171262 D130043K22Rik protein_coding Interval_5984 chr1 93725462 93726104 + 0 NA intron (ENSMUSG00000026279.14, intron 2 of 5) protein_coding-intron (ENSMUSG00000026279.14, intron 2 of 5) -5321 ENSMUSG00000101952.1 ENSMUSG00000101952 ENSMUST00000188846 Gm10550 antisense Interval_87320 chr19 47655167 47655441 + 0 NA intron (ENSMUSG00000025064.15, intron 36 of 52) protein_coding-intron (ENSMUSG00000025064.15, intron 36 of 53) 20532 ENSMUSG00000025064.15 ENSMUSG00000025064 ENSMUST00000235883 Col17a1 protein_coding Interval_95063 chr2 103629911 103630164 + 0 NA intron (ENSMUSG00000032724.5, intron 1 of 16) protein_coding-intron (ENSMUSG00000032724.5, intron 1 of 16) 82778 ENSMUSG00000081687.1 ENSMUSG00000081687 ENSMUST00000118456 Gm13996 processed_pseudogene Interval_90420 chr2 30346043 30346276 + 0 NA promoter-TSS (ENSMUSG00000026860.16) protein_coding-promoter-TSS (ENSMUSG00000026860.16) 13130 ENSMUSG00000026860.16 ENSMUSG00000026860 ENSMUST00000139963 Sh3glb2 protein_coding Interval_125822 chr5 74694095 74694867 + 0 NA intron (ENSMUSG00000029228.15, intron 1 of 10) protein_coding-intron (ENSMUSG00000029228.15, intron 1 of 10) -8117 ENSMUSG00000085657.7 ENSMUSG00000085657 ENSMUST00000155864 Gm15984 antisense Interval_64423 chr16 11275126 11275647 + 0 NA Intergenic Intergenic -20941 ENSMUSG00000088544.1 ENSMUSG00000088544 ENSMUST00000157919 Mir1945 miRNA Interval_76911 chr17 84935600 84936303 + 0 NA intron (ENSMUSG00000097047.2, intron 2 of 3) bidirectional_promoter_lncRNA-intron (ENSMUSG00000097047.2, intron 2 of 3) 21288 ENSMUSG00000097047.2 ENSMUSG00000097047 ENSMUST00000181147 1110020A21Rik bidirectional_promoter_lncRNA Interval_42627 chr13 17194261 17194671 + 0 NA intron (ENSMUSG00000055137.7, intron 12 of 13) protein_coding-intron (ENSMUSG00000055137.7, intron 12 of 13) -11555 ENSMUSG00000094754.1 ENSMUSG00000094754 ENSMUST00000178071 Gm25020 snRNA Interval_97801 chr2 144165048 144166621 + 0 NA intron (ENSMUSG00000074758.10, intron 1 of 2) lincRNA-intron (ENSMUSG00000074758.10, intron 2 of 3) -22461 ENSMUSG00000082480.1 ENSMUSG00000082480 ENSMUST00000118911 Gm11687 processed_pseudogene Interval_153277 chr7 143153765 143155204 + 0 NA intron (ENSMUSG00000009545.14, intron 2 of 11) protein_coding-intron (ENSMUSG00000009545.14, intron 2 of 15) -13876 ENSMUSG00000101062.1 ENSMUSG00000101062 ENSMUST00000185637 Gm28821 antisense Interval_165614 chr9 50429694 50430213 + 0 NA Intergenic Intergenic -64574 ENSMUSG00000032068.14 ENSMUSG00000032068 ENSMUST00000188047 Plet1 protein_coding Interval_138396 chr6 87854300 87854630 + 0 NA Intergenic Intergenic 3256 ENSMUSG00000107798.1 ENSMUSG00000107798 ENSMUST00000204964 Gm44064 TEC Interval_86836 chr19 44261429 44262287 + 0 NA TTS (ENSMUSG00000118217.1) unprocessed_pseudogene-TTS (ENSMUSG00000118217.1) 9341 ENSMUSG00000118217.1 ENSMUSG00000118217 ENSMUST00000235333 Gm6951 unprocessed_pseudogene Interval_94538 chr2 92012722 92013350 + 0 NA intron (ENSMUSG00000027230.9, intron 1 of 11) protein_coding-intron (ENSMUSG00000027230.9, intron 1 of 11) 11466 ENSMUSG00000027230.9 ENSMUSG00000027230 ENSMUST00000028663 Creb3l1 protein_coding Interval_134537 chr6 29402537 29403298 + 0 NA promoter-TSS (ENSMUSG00000029769.16) protein_coding-promoter-TSS (ENSMUSG00000029769.16) -5341 ENSMUSG00000104796.1 ENSMUSG00000104796 ENSMUST00000196017 Gm44354 miRNA Interval_132394 chr5 144693397 144693583 + 0 NA Intergenic Intergenic 30307 ENSMUSG00000082524.3 ENSMUSG00000082524 ENSMUST00000121256 Gm6272 processed_pseudogene Interval_91095 chr2 35004718 35005209 + 0 NA intron (ENSMUSG00000026874.10, intron 2 of 6) protein_coding-intron (ENSMUSG00000026874.10, intron 28 of 40) 10990 ENSMUSG00000085599.1 ENSMUSG00000085599 ENSMUST00000153559 Gm13449 antisense Interval_103129 chr3 35744985 35745681 + 0 NA Intergenic Intergenic 9960 ENSMUSG00000064834.1 ENSMUSG00000064834 ENSMUST00000082900 Gm25696 snRNA Interval_120703 chr4 150187293 150188730 + 0 NA TTS (ENSMUSG00000028972.11) protein_coding-TTS (ENSMUSG00000028972.11) 8112 ENSMUSG00000028972.11 ENSMUSG00000028972 ENSMUST00000126449 Car6 protein_coding Interval_84099 chr19 7205515 7206867 + 0 NA promoter-TSS (ENSMUSG00000024767.11) protein_coding-promoter-TSS (ENSMUSG00000024767.11) -416 ENSMUSG00000024767.11 ENSMUSG00000024767 ENSMUST00000123743 Otub1 protein_coding Interval_87566 chr19 53488725 53488900 + 0 NA Intergenic Intergenic 5318 ENSMUSG00000118378.1 ENSMUSG00000118378 ENSMUST00000235451 Gm50393 TEC Interval_123282 chr5 31104678 31105163 + 0 NA intron (ENSMUSG00000029151.14, intron 1 of 8) protein_coding-intron (ENSMUSG00000029151.14, intron 1 of 3) 3317 ENSMUSG00000029151.14 ENSMUSG00000029151 ENSMUST00000201396 Slc30a3 protein_coding Interval_133362 chr6 3741207 3741751 + 0 NA intron (ENSMUSG00000023964.15, intron 3 of 14) protein_coding-intron (ENSMUSG00000023964.15, intron 3 of 15) -19476 ENSMUSG00000070107.1 ENSMUSG00000070107 ENSMUST00000093599 Mir489 miRNA Interval_24973 chr11 42285258 42285566 + 0 NA Intergenic Intergenic 35639 ENSMUSG00000020428.13 ENSMUSG00000020428 ENSMUST00000109286 Gabra6 protein_coding Interval_16755 chr10 67973729 67974263 + 0 NA promoter-TSS (ENSMUSG00000112899.1) lincRNA-promoter-TSS (ENSMUSG00000112899.1) -288 ENSMUSG00000112899.1 ENSMUSG00000112899 ENSMUST00000219339 4930521O17Rik lincRNA Interval_98592 chr2 153443648 153446351 + 0 NA promoter-TSS (ENSMUSG00000061411.12) protein_coding-promoter-TSS (ENSMUSG00000061411.12) 31150 ENSMUSG00000082283.1 ENSMUSG00000082283 ENSMUST00000119815 Gm14472 processed_pseudogene Interval_20766 chr10 120857424 120858216 + 0 NA intron (ENSMUSG00000087480.1, intron 1 of 2) protein_coding-intron (ENSMUSG00000051236.13, intron 2 of 6) 191 ENSMUSG00000087480.1 ENSMUSG00000087480 ENSMUST00000127564 Gm15910 antisense Interval_63766 chr15 103299837 103300421 + 0 NA promoter-TSS (ENSMUSG00000116308.1) antisense-promoter-TSS (ENSMUSG00000116308.1) -936 ENSMUSG00000116308.1 ENSMUSG00000116308 ENSMUST00000231068 Gm49482 antisense Interval_44646 chr13 46912873 46913751 + 0 NA intron (ENSMUSG00000021375.11, intron 2 of 2) protein_coding-intron (ENSMUSG00000021375.11, intron 2 of 37) 10723 ENSMUSG00000084466.1 ENSMUSG00000084466 ENSMUST00000122517 Gm22960 snRNA Interval_13157 chr10 12608219 12610251 + 0 NA intron (ENSMUSG00000019820.11, intron 51 of 74) protein_coding-intron (ENSMUSG00000019820.11, intron 50 of 73) 79627 ENSMUSG00000019820.11 ENSMUSG00000019820 ENSMUST00000219135 Utrn protein_coding Interval_118964 chr4 134746134 134746527 + 0 NA TTS (ENSMUSG00000037295.7) protein_coding-TTS (ENSMUSG00000037295.7) 3777 ENSMUSG00000037295.7 ENSMUSG00000037295 ENSMUST00000140678 Ldlrap1 protein_coding Interval_143069 chr6 149033819 149034039 + 0 NA intron (ENSMUSG00000030313.15, intron 7 of 13) protein_coding-intron (ENSMUSG00000030313.15, intron 7 of 20) -7051 ENSMUSG00000081532.1 ENSMUSG00000081532 ENSMUST00000120216 Gm15781 processed_pseudogene Interval_7551 chr1 132157334 132159730 + 0 NA Intergenic Intergenic 19028 ENSMUSG00000099874.1 ENSMUSG00000099874 ENSMUST00000187926 Gm29629 antisense Interval_114387 chr4 74634901 74636127 + 0 NA TTS (ENSMUSG00000099334.1) snoRNA-TTS (ENSMUSG00000099334.1) 295 ENSMUSG00000104700.1 ENSMUSG00000104700 ENSMUST00000200225 Gm26379 snoRNA Interval_103624 chr3 51264098 51265325 + 0 NA TTS (ENSMUSG00000037174.18) protein_coding-TTS (ENSMUSG00000037174.18) -12048 ENSMUSG00000087440.2 ENSMUSG00000087440 ENSMUST00000139771 4930577N17Rik TEC Interval_162919 chr9 13195239 13196078 + 0 NA Intergenic Intergenic 50171 ENSMUSG00000079083.3 ENSMUSG00000079083 ENSMUST00000110582 Jrkl protein_coding Interval_80356 chr18 39937162 39937359 + 0 NA Intergenic Intergenic -7886 ENSMUSG00000118015.1 ENSMUSG00000118015 ENSMUST00000237624 Gm41708 lincRNA Interval_20616 chr10 119534936 119535268 + 0 NA intron (ENSMUSG00000034813.18, intron 1 of 21) protein_coding-intron (ENSMUSG00000034813.18, intron 1 of 22) 11264 ENSMUSG00000112243.1 ENSMUSG00000112243 ENSMUST00000220254 Gm47342 TEC Interval_64982 chr16 17670711 17671182 + 0 NA intron (ENSMUSG00000012114.17, intron 8 of 17) protein_coding-intron (ENSMUSG00000012114.17, intron 8 of 17) 24246 ENSMUSG00000041617.10 ENSMUSG00000041617 ENSMUST00000183279 Ccdc74a protein_coding Interval_60698 chr15 76230954 76231213 + 0 NA TTS (ENSMUSG00000063268.12) protein_coding-TTS (ENSMUSG00000063268.12) 3390 ENSMUSG00000063268.12 ENSMUSG00000063268 ENSMUST00000170851 Parp10 protein_coding Interval_50792 chr14 19872430 19872664 + 0 NA TTS (ENSMUSG00000043004.13) protein_coding-TTS (ENSMUSG00000043004.13) 5567 ENSMUSG00000114436.1 ENSMUSG00000114436 ENSMUST00000224546 Gm48283 lincRNA Interval_14423 chr10 33425514 33425854 + 0 NA intron (ENSMUSG00000019787.9, intron 23 of 37) protein_coding-intron (ENSMUSG00000019787.9, intron 23 of 37) 11169 ENSMUSG00000111958.1 ENSMUSG00000111958 ENSMUST00000219520 Gm47844 processed_pseudogene Interval_25940 chr11 52764267 52766198 + 0 NA intron (ENSMUSG00000036264.9, intron 1 of 15) protein_coding-intron (ENSMUSG00000036264.9, intron 1 of 15) 598 ENSMUSG00000036264.9 ENSMUSG00000036264 ENSMUST00000036796 Fstl4 protein_coding Interval_73463 chr17 37525404 37525628 + 0 NA promoter-TSS (ENSMUSG00000090675.2) protein_coding-promoter-TSS (ENSMUSG00000090675.2) -444 ENSMUSG00000090675.2 ENSMUSG00000090675 ENSMUST00000097325 Olfr111 protein_coding Interval_131149 chr5 135444023 135444965 + 0 NA intron (ENSMUSG00000039959.13, intron 10 of 13) protein_coding-intron (ENSMUSG00000039959.13, intron 9 of 30) 21433 ENSMUSG00000039959.13 ENSMUSG00000039959 ENSMUST00000202044 Hip1 protein_coding Interval_132107 chr5 142799122 142801212 + 0 NA intron (ENSMUSG00000039477.16, intron 2 of 2) protein_coding-intron (ENSMUSG00000039477.16, intron 2 of 15) -34145 ENSMUSG00000039477.16 ENSMUSG00000039477 ENSMUST00000198181 Tnrc18 protein_coding Interval_8068 chr1 135540214 135541342 + 0 NA intron (ENSMUSG00000009418.16, intron 4 of 30) protein_coding-intron (ENSMUSG00000009418.16, intron 1 of 29) -15440 ENSMUSG00000104524.1 ENSMUSG00000104524 ENSMUST00000192904 Gm37333 TEC Interval_122543 chr5 23700431 23700628 + 0 NA TTS (ENSMUSG00000105987.4) processed_transcript-TTS (ENSMUSG00000105987.4) 10532 ENSMUSG00000096832.1 ENSMUSG00000096832 ENSMUST00000116685 Gm50451 snoRNA Interval_17891 chr10 80619973 80620299 + 0 NA Intergenic Intergenic 10876 ENSMUSG00000099283.1 ENSMUSG00000099283 ENSMUST00000184456 Mir6912 miRNA Interval_139886 chr6 112384673 112385792 + 0 NA intron (ENSMUSG00000034387.13, intron 1 of 11) protein_coding-intron (ENSMUSG00000034387.13, intron 1 of 11) 2786 ENSMUSG00000034387.13 ENSMUSG00000034387 ENSMUST00000238755 Ssu2 protein_coding Interval_47769 chr13 92496741 92497142 + 0 NA intron (ENSMUSG00000021706.14, intron 10 of 13) protein_coding-intron (ENSMUSG00000021706.14, intron 14 of 17) -12926 ENSMUSG00000034334.8 ENSMUSG00000034334 ENSMUST00000040106 Fam151b protein_coding Interval_31776 chr11 102786030 102786374 + 0 NA Intergenic Intergenic 12085 ENSMUSG00000020926.16 ENSMUSG00000020926 ENSMUST00000135513 Adam11 protein_coding Interval_169661 chr9 99871326 99872848 + 0 NA Intergenic Intergenic 3568 ENSMUSG00000053747.9 ENSMUSG00000053747 ENSMUST00000183065 Sox14 protein_coding Interval_104749 chr3 70250175 70250383 + 0 NA Intergenic Intergenic -21405 ENSMUSG00000089507.1 ENSMUSG00000089507 ENSMUST00000158882 Gm23477 snoRNA Interval_148787 chr7 87423262 87423482 + 0 NA Intergenic Intergenic 70020 ENSMUSG00000004651.6 ENSMUSG00000004651 ENSMUST00000207834 Tyr protein_coding Interval_119998 chr4 141300960 141302696 + 0 NA promoter-TSS (ENSMUSG00000006445.3) protein_coding-promoter-TSS (ENSMUSG00000006445.3) -15085 ENSMUSG00000006445.3 ENSMUSG00000006445 ENSMUST00000149002 Epha2 protein_coding Interval_172579 chrX 37042878 37043168 + 0 NA Intergenic Intergenic -5698 ENSMUSG00000081220.2 ENSMUSG00000081220 ENSMUST00000118460 Gm14542 processed_pseudogene Interval_7392 chr1 130854685 130854889 + 0 NA Intergenic Intergenic -10993 ENSMUSG00000042474.6 ENSMUSG00000042474 ENSMUST00000145446 Fcmr protein_coding Interval_98566 chr2 153282365 153283417 + 0 NA Intergenic Intergenic -8522 ENSMUSG00000027475.9 ENSMUSG00000027475 ENSMUST00000028977 Kif3b protein_coding Interval_30682 chr11 95870312 95871021 + 0 NA TTS (ENSMUSG00000086255.1) antisense-TTS (ENSMUSG00000086255.1) -4412 ENSMUSG00000086255.1 ENSMUSG00000086255 ENSMUST00000129261 Gm11534 antisense Interval_133373 chr6 4118434 4119854 + 0 NA Intergenic Intergenic -32214 ENSMUSG00000032757.6 ENSMUSG00000032757 ENSMUST00000205191 Bet1 protein_coding Interval_168307 chr9 78547560 78548253 + 0 NA intron (ENSMUSG00000049624.14, intron 9 of 10) protein_coding-intron (ENSMUSG00000049624.14, intron 9 of 10) 27360 ENSMUSG00000111417.1 ENSMUSG00000111417 ENSMUST00000214586 Gm47430 lincRNA Interval_160887 chr8 114650855 114652121 + 0 NA intron (ENSMUSG00000004637.15, intron 1 of 2) protein_coding-intron (ENSMUSG00000004637.15, intron 5 of 8) -9374 ENSMUSG00000089723.1 ENSMUSG00000089723 ENSMUST00000160544 Gm16117 antisense Interval_77020 chr17 85679200 85680373 + 0 NA Intergenic Intergenic 8488 ENSMUSG00000024134.11 ENSMUSG00000024134 ENSMUST00000024947 Six2 protein_coding Interval_39584 chr12 91159438 91159940 + 0 NA promoter-TSS (ENSMUSG00000113983.1) processed_pseudogene-promoter-TSS (ENSMUSG00000113983.1) -172 ENSMUSG00000113983.1 ENSMUSG00000113983 ENSMUST00000220984 Gm47742 processed_pseudogene Interval_164026 chr9 31016888 31019404 + 0 NA intron (ENSMUSG00000111673.1, intron 1 of 2) antisense-intron (ENSMUSG00000111673.1, intron 1 of 2) -8083 ENSMUSG00000111673.1 ENSMUSG00000111673 ENSMUST00000216803 Gm29724 antisense Interval_74340 chr17 49074236 49075189 + 0 NA intron (ENSMUSG00000040490.4, intron 2 of 2) protein_coding-intron (ENSMUSG00000040490.4, intron 2 of 2) 21721 ENSMUSG00000105424.1 ENSMUSG00000105424 ENSMUST00000200509 Gm44304 miRNA Interval_5449 chr1 88911785 88911996 + 0 NA Intergenic Intergenic -20429 ENSMUSG00000101333.1 ENSMUSG00000101333 ENSMUST00000188327 Gm4753 processed_pseudogene Interval_11845 chr1 186234048 186234964 + 0 NA Intergenic Intergenic 52249 ENSMUSG00000102790.1 ENSMUSG00000102790 ENSMUST00000193401 Gm37272 TEC Interval_152450 chr7 133075275 133075526 + 0 NA intron (ENSMUSG00000030970.16, intron 2 of 3) protein_coding-intron (ENSMUSG00000030970.16, intron 2 of 10) 44871 ENSMUSG00000110282.1 ENSMUSG00000110282 ENSMUST00000209529 B930086L07Rik TEC Interval_91832 chr2 49996537 49996707 + 0 NA Intergenic Intergenic -89742 ENSMUSG00000088825.1 ENSMUSG00000088825 ENSMUST00000158200 Gm25223 misc_RNA Interval_146548 chr7 46763224 46763596 + 0 NA intron (ENSMUSG00000014418.16, intron 3 of 3) protein_coding-intron (ENSMUSG00000014418.16, intron 21 of 22) 5682 ENSMUSG00000014418.16 ENSMUSG00000014418 ENSMUST00000123725 Hps5 protein_coding Interval_98636 chr2 153710522 153711249 + 0 NA intron (ENSMUSG00000082079.2, intron 4 of 18) protein_coding-intron (ENSMUSG00000082079.2, intron 4 of 18) 14233 ENSMUSG00000082079.2 ENSMUSG00000082079 ENSMUST00000119996 Dnmt3c protein_coding Interval_50950 chr14 21026948 21027656 + 0 NA TTS (ENSMUSG00000021823.10) protein_coding-TTS (ENSMUSG00000021823.10) 24893 ENSMUSG00000021824.13 ENSMUSG00000021824 ENSMUST00000130370 Ap3m1 protein_coding Interval_168700 chr9 86076091 86076481 + 0 NA Intergenic Intergenic 99729 ENSMUSG00000111418.1 ENSMUSG00000111418 ENSMUST00000216119 Gm18016 processed_pseudogene Interval_36452 chr12 45041809 45042349 + 0 NA intron (ENSMUSG00000046314.16, intron 1 of 1) protein_coding-intron (ENSMUSG00000046314.16, intron 1 of 5) 32147 ENSMUSG00000046314.16 ENSMUSG00000046314 ENSMUST00000218249 Stxbp6 protein_coding Interval_97579 chr2 140078835 140079877 + 0 NA Intergenic Intergenic -5887 ENSMUSG00000080006.4 ENSMUSG00000080006 ENSMUST00000116122 Rps19-ps7 processed_pseudogene Interval_22182 chr11 6877560 6878138 + 0 NA Intergenic Intergenic -15545 ENSMUSG00000082333.1 ENSMUSG00000082333 ENSMUST00000118142 Gm11984 processed_pseudogene Interval_63052 chr15 98851372 98852229 + 0 NA intron (ENSMUSG00000048154.17, intron 32 of 54) protein_coding-intron (ENSMUSG00000048154.17, intron 32 of 54) -2563 ENSMUSG00000048154.17 ENSMUSG00000048154 ENSMUST00000184363 Kmt2d protein_coding Interval_43603 chr13 34043466 34044260 + 0 NA intron (ENSMUSG00000038286.11, intron 1 of 4) protein_coding-intron (ENSMUSG00000038286.11, intron 1 of 6) 9337 ENSMUSG00000091462.2 ENSMUSG00000091462 ENSMUST00000163843 Gm17084 processed_pseudogene Interval_117893 chr4 126909797 126910587 + 0 NA TTS (ENSMUSG00000042446.16) protein_coding-TTS (ENSMUSG00000042446.16) -49080 ENSMUSG00000088984.1 ENSMUSG00000088984 ENSMUST00000158359 Gm25604 snoRNA Interval_159656 chr8 96143593 96143866 + 0 NA Intergenic Intergenic -165790 ENSMUSG00000110623.1 ENSMUSG00000110623 ENSMUST00000212446 Gm32005 lincRNA Interval_150270 chr7 109146324 109146711 + 0 NA TTS (ENSMUSG00000109107.1) antisense-TTS (ENSMUSG00000109107.1) 3630 ENSMUSG00000109107.1 ENSMUSG00000109107 ENSMUST00000208480 Gm44781 antisense Interval_160456 chr8 109634739 109634999 + 0 NA intron (ENSMUSG00000048827.12, intron 3 of 9) protein_coding-intron (ENSMUSG00000048827.12, intron 11 of 31) 3537 ENSMUSG00000048827.12 ENSMUSG00000048827 ENSMUST00000212545 Pkd1l3 protein_coding Interval_136762 chr6 59249720 59251743 + 0 NA Intergenic Intergenic 41861 ENSMUSG00000049232.3 ENSMUSG00000049232 ENSMUST00000062626 Tigd2 protein_coding Interval_12708 chr10 4416091 4416362 + 0 NA intron (ENSMUSG00000019763.11, intron 6 of 12) protein_coding-intron (ENSMUSG00000019763.11, intron 6 of 12) 7193 ENSMUSG00000085687.1 ENSMUSG00000085687 ENSMUST00000132184 Gm16153 processed_transcript Interval_65829 chr16 29615722 29616157 + 0 NA promoter-TSS (ENSMUSG00000038084.16) protein_coding-promoter-TSS (ENSMUSG00000038084.16) 28925 ENSMUSG00000038084.16 ENSMUSG00000038084 ENSMUST00000160101 Opa1 protein_coding Interval_24006 chr11 29380399 29380837 + 0 NA intron (ENSMUSG00000032740.17, intron 2 of 30) protein_coding-intron (ENSMUSG00000032740.17, intron 2 of 31) 6270 ENSMUSG00000032740.17 ENSMUSG00000032740 ENSMUST00000144450 Ccdc88a protein_coding Interval_12355 chr1 192443958 192445251 + 0 NA intron (ENSMUSG00000058248.12, intron 10 of 10) protein_coding-intron (ENSMUSG00000058248.12, intron 10 of 10) 9864 ENSMUSG00000058248.12 ENSMUSG00000058248 ENSMUST00000151152 Kcnh1 protein_coding Interval_70270 chr17 7868531 7869197 + 0 NA Intergenic Intergenic -41562 ENSMUSG00000071984.11 ENSMUSG00000071984 ENSMUST00000167580 Fndc1 protein_coding Interval_169511 chr9 98639790 98640027 + 0 NA Intergenic Intergenic -38263 ENSMUSG00000032459.9 ENSMUSG00000032459 ENSMUST00000190150 Mrps22 protein_coding Interval_66211 chr16 32346163 32346905 + 0 NA intron (ENSMUSG00000053774.9, intron 1 of 2) protein_coding-intron (ENSMUSG00000053774.9, intron 1 of 10) 14269 ENSMUSG00000053774.9 ENSMUSG00000053774 ENSMUST00000232137 Ubxn7 protein_coding Interval_86085 chr19 36470018 36471352 + 0 NA Intergenic Intergenic -19528 ENSMUSG00000114235.1 ENSMUSG00000114235 ENSMUST00000224716 F530104D19Rik antisense Interval_2003 chr1 35841561 35842305 + 0 NA Intergenic Intergenic 34959 ENSMUSG00000101714.1 ENSMUSG00000101714 ENSMUST00000187528 Gm28415 lincRNA Interval_87613 chr19 53731992 53732652 + 0 NA intron (ENSMUSG00000043639.15, intron 1 of 13) protein_coding-intron (ENSMUSG00000043639.15, intron 1 of 13) 35988 ENSMUSG00000089807.1 ENSMUSG00000089807 ENSMUST00000161107 Gm16298 processed_pseudogene Interval_21209 chr10 127229944 127232016 + 0 NA exon (ENSMUSG00000074657.5, exon 25 of 29) protein_coding-exon (ENSMUSG00000074657.5, exon 25 of 29) -19395 ENSMUSG00000025417.8 ENSMUSG00000025417 ENSMUST00000218386 Pip4k2c protein_coding Interval_98627 chr2 153642565 153643371 + 0 NA Intergenic Intergenic 7318 ENSMUSG00000079000.3 ENSMUSG00000079000 ENSMUST00000124988 Dnmt3bos antisense Interval_142607 chr6 144237414 144237628 + 0 NA intron (ENSMUSG00000041540.16, intron 4 of 6) protein_coding-intron (ENSMUSG00000041540.16, intron 4 of 13) -27953 ENSMUSG00000041540.16 ENSMUSG00000041540 ENSMUST00000150087 Sox5 protein_coding Interval_155020 chr8 25749197 25749452 + 0 NA intron (ENSMUSG00000061313.8, intron 1 of 2) protein_coding-intron (ENSMUSG00000061313.8, intron 5 of 17) 526 ENSMUSG00000061313.8 ENSMUSG00000061313 ENSMUST00000209419 Ddhd2 protein_coding Interval_106267 chr3 95027292 95027842 + 0 NA Intergenic Intergenic 6349 ENSMUSG00000005625.15 ENSMUSG00000005625 ENSMUST00000143688 Psmd4 protein_coding Interval_22601 chr11 12224766 12225229 + 0 NA Intergenic Intergenic -96999 ENSMUSG00000083527.1 ENSMUSG00000083527 ENSMUST00000121727 Gm12001 processed_pseudogene Interval_55208 chr14 79331183 79332339 + 0 NA exon (ENSMUSG00000022020.15, exon 20 of 20) protein_coding-exon (ENSMUSG00000022020.15, exon 20 of 20) 19060 ENSMUSG00000022020.15 ENSMUSG00000022020 ENSMUST00000165337 Naa16 protein_coding Interval_39731 chr12 95744450 95745380 + 0 NA intron (ENSMUSG00000047414.6, intron 1 of 1) protein_coding-intron (ENSMUSG00000047414.6, intron 1 of 1) 10805 ENSMUSG00000112067.1 ENSMUSG00000112067 ENSMUST00000217888 Gm48015 TEC Interval_145210 chr7 30669171 30670068 + 0 NA Intergenic Intergenic 1981 ENSMUSG00000049761.6 ENSMUSG00000049761 ENSMUST00000186845 Pmis2 protein_coding Interval_5605 chr1 90159640 90160625 + 0 NA TTS (ENSMUSG00000100850.1) lincRNA-TTS (ENSMUSG00000100850.1) 6504 ENSMUSG00000100850.1 ENSMUSG00000100850 ENSMUST00000190254 4930434B07Rik lincRNA Interval_126618 chr5 90977348 90977871 + 0 NA intron (ENSMUSG00000029376.8, intron 6 of 7) protein_coding-intron (ENSMUSG00000029376.8, intron 6 of 7) 46492 ENSMUSG00000029376.8 ENSMUSG00000029376 ENSMUST00000201851 Mthfd2l protein_coding Interval_166007 chr9 55391984 55393066 + 0 NA intron (ENSMUSG00000032313.11, intron 3 of 10) protein_coding-intron (ENSMUSG00000032313.11, intron 3 of 10) 59324 ENSMUSG00000032313.11 ENSMUSG00000032313 ENSMUST00000130465 Tmem266 protein_coding Interval_119608 chr4 138700124 138703143 + 0 NA Intergenic Intergenic 23588 ENSMUSG00000043621.13 ENSMUSG00000043621 ENSMUST00000135156 Ubxn10 protein_coding Interval_17167 chr10 73400447 73400804 + 0 NA intron (ENSMUSG00000052613.16, intron 1 of 1) protein_coding-intron (ENSMUSG00000052613.16, intron 1 of 13) -24592 ENSMUSG00000112427.1 ENSMUSG00000112427 ENSMUST00000218804 Gm19168 processed_pseudogene Interval_149390 chr7 98071460 98072118 + 0 NA intron (ENSMUSG00000030761.16, intron 28 of 46) protein_coding-intron (ENSMUSG00000030761.16, intron 29 of 47) 19339 ENSMUSG00000030761.16 ENSMUSG00000030761 ENSMUST00000131632 Myo7a protein_coding Interval_95449 chr2 109578598 109579775 + 0 NA Intergenic Intergenic -93980 ENSMUSG00000093410.1 ENSMUSG00000093410 ENSMUST00000175796 Gm20638 processed_transcript Interval_30810 chr11 96629721 96630462 + 0 NA intron (ENSMUSG00000057058.16, intron 4 of 7) protein_coding-intron (ENSMUSG00000057058.16, intron 4 of 11) -136711 ENSMUSG00000085242.1 ENSMUSG00000085242 ENSMUST00000124865 Gm11537 antisense Interval_56568 chr14 120390418 120390751 + 0 NA exon (ENSMUSG00000022139.17, exon 5 of 5) protein_coding-exon (ENSMUSG00000022139.17, exon 5 of 5) -1599 ENSMUSG00000097903.2 ENSMUSG00000097903 ENSMUST00000181685 Gm26679 antisense Interval_51530 chr14 29903170 29903886 + 0 NA promoter-TSS (ENSMUSG00000114606.1) transcribed_processed_pseudogene-promoter-TSS (ENSMUSG00000114606.1) 578 ENSMUSG00000114606.1 ENSMUSG00000114606 ENSMUST00000223966 Gm7633 transcribed_processed_pseudogene Interval_13507 chr10 18856634 18857840 + 0 NA TTS (ENSMUSG00000019851.8) protein_coding-TTS (ENSMUSG00000019851.8) 12217 ENSMUSG00000019851.8 ENSMUSG00000019851 ENSMUST00000019998 Perp protein_coding Interval_34013 chr11 120022260 120023215 + 0 NA intron (ENSMUSG00000025375.15, intron 1 of 13) protein_coding-intron (ENSMUSG00000025375.15, intron 1 of 13) -7875 ENSMUSG00000065600.1 ENSMUSG00000065600 ENSMUST00000083666 Mir338 miRNA Interval_170927 chr9 112311263 112311454 + 0 NA intron (ENSMUSG00000087038.9, intron 2 of 3) lincRNA-intron (ENSMUSG00000087038.9, intron 2 of 3) 54784 ENSMUSG00000087038.9 ENSMUSG00000087038 ENSMUST00000163302 2900079G21Rik lincRNA Interval_39351 chr12 86867137 86868199 + 0 NA Intergenic Intergenic 17130 ENSMUSG00000034168.7 ENSMUSG00000034168 ENSMUST00000038422 Irf2bpl protein_coding Interval_38909 chr12 83735326 83736346 + 0 NA TTS (ENSMUSG00000019969.14) protein_coding-TTS (ENSMUSG00000019969.14) -4379 ENSMUSG00000114050.1 ENSMUSG00000114050 ENSMUST00000222646 Gm47666 antisense Interval_50638 chr14 17005813 17006452 + 0 NA Intergenic Intergenic 52526 ENSMUSG00000114202.1 ENSMUSG00000114202 ENSMUST00000224816 Gm18078 processed_pseudogene Interval_93920 chr2 79354612 79355188 + 0 NA exon (ENSMUSG00000075256.9, exon 4 of 4) protein_coding-exon (ENSMUSG00000075256.9, exon 4 of 4) -4965 ENSMUSG00000081284.1 ENSMUSG00000081284 ENSMUST00000122056 Gm13673 processed_pseudogene Interval_158381 chr8 83242630 83242912 + 0 NA intron (ENSMUSG00000031709.15, intron 9 of 20) protein_coding-intron (ENSMUSG00000031709.15, intron 6 of 17) -16488 ENSMUSG00000031709.15 ENSMUSG00000031709 ENSMUST00000142673 Tbc1d9 protein_coding Interval_130092 chr5 124210357 124210932 + 0 NA intron (ENSMUSG00000029406.15, intron 2 of 24) protein_coding-intron (ENSMUSG00000029406.15, intron 1 of 23) 15002 ENSMUSG00000089842.2 ENSMUSG00000089842 ENSMUST00000198466 Pitpnm2os2 antisense Interval_172082 chrX 6572788 6572997 + 0 NA intron (ENSMUSG00000068270.15, intron 2 of 3) protein_coding-intron (ENSMUSG00000068270.15, intron 2 of 8) 157150 ENSMUSG00000068270.15 ENSMUSG00000068270 ENSMUST00000089520 Shroom4 protein_coding Interval_61991 chr15 85709245 85710639 + 0 NA Intergenic Intergenic 2623 ENSMUSG00000065564.1 ENSMUSG00000065564 ENSMUST00000083630 Mirlet7b miRNA Interval_21817 chr11 4534218 4534442 + 0 NA intron (ENSMUSG00000034354.17, intron 1 of 17) protein_coding-intron (ENSMUSG00000034354.17, intron 1 of 17) -27450 ENSMUSG00000081974.3 ENSMUSG00000081974 ENSMUST00000122068 Gm11960 transcribed_processed_pseudogene Interval_145801 chr7 39431325 39432017 + 0 NA TTS (ENSMUSG00000098777.1) miRNA-TTS (ENSMUSG00000098777.1) 164 ENSMUSG00000098777.1 ENSMUSG00000098777 ENSMUST00000183429 Gm27437 miRNA Interval_41996 chr13 6184662 6184862 + 0 NA Intergenic Intergenic -84346 ENSMUSG00000113765.1 ENSMUSG00000113765 ENSMUST00000222170 Gm47549 lincRNA Interval_64881 chr16 16946637 16947550 + 0 NA Intergenic Intergenic 14232 ENSMUSG00000116703.1 ENSMUSG00000116703 ENSMUST00000231540 Gm46540 processed_pseudogene Interval_113812 chr4 58990504 58991072 + 0 NA Intergenic Intergenic -3669 ENSMUSG00000028378.6 ENSMUSG00000028378 ENSMUST00000030069 Ptgr1 protein_coding Interval_15469 chr10 47631140 47631986 + 0 NA Intergenic Intergenic -8560 ENSMUSG00000112702.1 ENSMUSG00000112702 ENSMUST00000217715 Gm47571 TEC Interval_44679 chr13 47104323 47106824 + 0 NA promoter-TSS (ENSMUSG00000114681.1) bidirectional_promoter_lncRNA-promoter-TSS (ENSMUSG00000114681.1) -846 ENSMUSG00000114681.1 ENSMUSG00000114681 ENSMUST00000224610 1700026N04Rik bidirectional_promoter_lncRNA Interval_10592 chr1 172082236 172083393 + 0 NA promoter-TSS (ENSMUSG00000003458.12) protein_coding-promoter-TSS (ENSMUSG00000003458.12) -19 ENSMUSG00000003458.12 ENSMUSG00000003458 ENSMUST00000142825 Ncstn protein_coding Interval_99225 chr2 158211907 158212638 + 0 NA intron (ENSMUSG00000037813.13, intron 5 of 14) protein_coding-intron (ENSMUSG00000037813.13, intron 5 of 13) 16950 ENSMUSG00000037813.13 ENSMUSG00000037813 ENSMUST00000046944 D630003M21Rik protein_coding Interval_29153 chr11 80747721 80747920 + 0 NA intron (ENSMUSG00000035441.14, intron 1 of 9) protein_coding-intron (ENSMUSG00000035441.14, intron 1 of 21) 32183 ENSMUSG00000035441.14 ENSMUSG00000035441 ENSMUST00000125944 Myo1d protein_coding Interval_54994 chr14 76727750 76727932 + 0 NA Intergenic Intergenic -32290 ENSMUSG00000115709.1 ENSMUSG00000115709 ENSMUST00000228541 4930431P22Rik lincRNA Interval_102377 chr3 22559645 22561162 + 0 NA Intergenic Intergenic 35165 ENSMUSG00000103801.1 ENSMUSG00000103801 ENSMUST00000192825 Spin3-ps processed_pseudogene Interval_4329 chr1 72747309 72747503 + 0 NA Intergenic Intergenic 36092 ENSMUSG00000046330.10 ENSMUSG00000046330 ENSMUST00000211963 Rpl37a protein_coding Interval_142712 chr6 145099754 145100962 + 0 NA Intergenic Intergenic 43969 ENSMUSG00000086643.1 ENSMUSG00000086643 ENSMUST00000141440 Gm15687 antisense Interval_13565 chr10 19759527 19759723 + 0 NA exon (ENSMUSG00000020007.4, exon 7 of 7) protein_coding-exon (ENSMUSG00000020007.4, exon 7 of 7) -23229 ENSMUSG00000094977.1 ENSMUSG00000094977 ENSMUST00000177746 Gm25256 snRNA Interval_87572 chr19 53518556 53519016 + 0 NA Intergenic Intergenic -10323 ENSMUSG00000034765.6 ENSMUSG00000034765 ENSMUST00000038287 Dusp5 protein_coding Interval_8463 chr1 139612680 139614140 + 0 NA intron (ENSMUSG00000090623.3, intron 3 of 5) unprocessed_pseudogene-intron (ENSMUSG00000090623.3, intron 3 of 5) 47489 ENSMUSG00000090623.3 ENSMUSG00000090623 ENSMUST00000170441 Cfhr3 unprocessed_pseudogene Interval_23524 chr11 23120262 23121437 + 0 NA Intergenic Intergenic -31291 ENSMUSG00000086366.1 ENSMUSG00000086366 ENSMUST00000141678 1700061J23Rik lincRNA Interval_9317 chr1 156179896 156180144 + 0 NA intron (ENSMUSG00000015484.3, intron 1 of 4) protein_coding-intron (ENSMUSG00000015484.3, intron 1 of 4) 25006 ENSMUSG00000015484.3 ENSMUSG00000015484 ENSMUST00000015628 Fam163a protein_coding Interval_167148 chr9 65642881 65643638 + 0 NA intron (ENSMUSG00000032387.15, intron 1 of 4) protein_coding-intron (ENSMUSG00000032387.15, intron 1 of 7) -15718 ENSMUSG00000032387.15 ENSMUSG00000032387 ENSMUST00000216769 Rbpms2 protein_coding Interval_167735 chr9 72376301 72376660 + 0 NA intron (ENSMUSG00000097211.2, intron 1 of 1) antisense-intron (ENSMUSG00000097211.2, intron 1 of 1) -7909 ENSMUSG00000102925.1 ENSMUSG00000102925 ENSMUST00000193900 Gm37150 TEC Interval_14557 chr10 35482092 35482354 + 0 NA intron (ENSMUSG00000111753.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000111753.1, intron 1 of 1) 3173 ENSMUSG00000111753.1 ENSMUSG00000111753 ENSMUST00000214107 1700054O05Rik lincRNA Interval_127606 chr5 105743924 105745557 + 0 NA intron (ENSMUSG00000046079.16, intron 1 of 2) protein_coding-intron (ENSMUSG00000046079.16, intron 2 of 2) 13351 ENSMUSG00000046079.16 ENSMUSG00000046079 ENSMUST00000134605 Lrrc8d protein_coding Interval_60528 chr15 74656142 74656599 + 0 NA Intergenic Intergenic 16200 ENSMUSG00000022602.14 ENSMUSG00000022602 ENSMUST00000110009 Arc protein_coding Interval_125662 chr5 73129028 73129245 + 0 NA intron (ENSMUSG00000070733.13, intron 5 of 19) protein_coding-intron (ENSMUSG00000070733.13, intron 4 of 59) -27878 ENSMUSG00000086376.2 ENSMUSG00000086376 ENSMUST00000146728 1700071G01Rik antisense Interval_16124 chr10 60862326 60863383 + 0 NA Intergenic Intergenic -31472 ENSMUSG00000020099.8 ENSMUSG00000020099 ENSMUST00000218637 Unc5b protein_coding Interval_122587 chr5 24029407 24031085 + 0 NA promoter-TSS (ENSMUSG00000028995.14) protein_coding-promoter-TSS (ENSMUSG00000028995.14) -19834 ENSMUSG00000105866.1 ENSMUSG00000105866 ENSMUST00000199216 Gm6745 processed_pseudogene Interval_27849 chr11 70388280 70389149 + 0 NA Intergenic Intergenic 21317 ENSMUSG00000018921.11 ENSMUSG00000018921 ENSMUST00000135148 Pelp1 protein_coding Interval_77418 chr17 88570320 88571587 + 0 NA intron (ENSMUSG00000034709.8, intron 14 of 21) protein_coding-intron (ENSMUSG00000034709.8, intron 14 of 21) 8836 ENSMUSG00000034709.8 ENSMUSG00000034709 ENSMUST00000185400 Ppp1r21 protein_coding Interval_72783 chr17 32161360 32162778 + 0 NA intron (ENSMUSG00000038146.8, intron 2 of 32) protein_coding-intron (ENSMUSG00000038146.8, intron 2 of 32) 21268 ENSMUSG00000117925.1 ENSMUSG00000117925 ENSMUST00000236191 Gm50127 processed_pseudogene Interval_62718 chr15 96434961 96435374 + 0 NA intron (ENSMUSG00000033228.8, intron 3 of 14) protein_coding-intron (ENSMUSG00000033228.8, intron 3 of 14) 8888 ENSMUSG00000033228.8 ENSMUSG00000033228 ENSMUST00000227133 Scaf11 protein_coding Interval_130776 chr5 130310035 130310369 + 0 NA intron (ENSMUSG00000056310.14, intron 13 of 15) protein_coding-intron (ENSMUSG00000056310.14, intron 13 of 15) 54583 ENSMUSG00000056310.14 ENSMUSG00000056310 ENSMUST00000147619 Tyw1 protein_coding Interval_33744 chr11 118239733 118240533 + 0 NA intron (ENSMUSG00000017132.17, intron 1 of 12) protein_coding-intron (ENSMUSG00000017132.17, intron 1 of 12) -27391 ENSMUSG00000017132.17 ENSMUSG00000017132 ENSMUST00000151165 Cyth1 protein_coding Interval_133391 chr6 4617696 4618410 + 0 NA intron (ENSMUSG00000015189.12, intron 5 of 7) protein_coding-intron (ENSMUSG00000015189.12, intron 5 of 17) 7819 ENSMUSG00000107932.1 ENSMUSG00000107932 ENSMUST00000203342 Gm44432 TEC Interval_167140 chr9 65603544 65604167 + 0 NA Intergenic Intergenic 16650 ENSMUSG00000041064.14 ENSMUSG00000041064 ENSMUST00000141046 Pif1 protein_coding Interval_16174 chr10 61222736 61222989 + 0 NA exon (ENSMUSG00000059901.12, exon 10 of 22) protein_coding-exon (ENSMUSG00000059901.12, exon 10 of 22) 47600 ENSMUSG00000020096.21 ENSMUSG00000020096 ENSMUST00000126831 Tbata protein_coding Interval_63198 chr15 99688661 99689494 + 0 NA intron (ENSMUSG00000023017.10, intron 1 of 2) protein_coding-intron (ENSMUSG00000023017.10, intron 3 of 11) -5967 ENSMUSG00000023017.10 ENSMUSG00000023017 ENSMUST00000227670 Asic1 protein_coding Interval_157472 chr8 70584861 70585717 + 0 NA intron (ENSMUSG00000070002.7, intron 7 of 11) protein_coding-intron (ENSMUSG00000070002.7, intron 7 of 11) -10678 ENSMUSG00000019139.10 ENSMUSG00000019139 ENSMUST00000211773 Isyna1 protein_coding Interval_102696 chr3 30282275 30283306 + 0 NA intron (ENSMUSG00000027684.16, intron 2 of 8) protein_coding-intron (ENSMUSG00000027684.16, intron 1 of 11) -8405 ENSMUSG00000103870.1 ENSMUSG00000103870 ENSMUST00000192999 Gm38362 TEC Interval_77577 chr17 92175593 92175859 + 0 NA Intergenic Intergenic -5339 ENSMUSG00000117584.1 ENSMUSG00000117584 ENSMUST00000234894 Gm49994 processed_pseudogene Interval_165919 chr9 54660902 54661979 + 0 NA intron (ENSMUSG00000032281.11, intron 1 of 3) protein_coding-intron (ENSMUSG00000032281.11, intron 1 of 13) -18282 ENSMUSG00000032281.11 ENSMUSG00000032281 ENSMUST00000132914 Acsbg1 protein_coding Interval_3968 chr1 65156464 65156758 + 0 NA Intergenic Intergenic 29868 ENSMUSG00000025950.16 ENSMUSG00000025950 ENSMUST00000191459 Idh1 protein_coding Interval_155390 chr8 33167769 33168340 + 0 NA Intergenic Intergenic 24242 ENSMUSG00000083557.1 ENSMUSG00000083557 ENSMUST00000119347 Gm6877 processed_pseudogene Interval_50453 chr14 13505365 13506009 + 0 NA intron (ENSMUSG00000056296.17, intron 3 of 5) protein_coding-intron (ENSMUSG00000056296.17, intron 3 of 5) -151607 ENSMUSG00000081115.2 ENSMUSG00000081115 ENSMUST00000118492 Gm15913 processed_pseudogene Interval_169220 chr9 95613610 95614346 + 0 NA Intergenic Intergenic 8441 ENSMUSG00000101936.1 ENSMUSG00000101936 ENSMUST00000190143 Gm28164 processed_pseudogene Interval_105982 chr3 90437192 90437435 + 0 NA Intergenic Intergenic -14270 ENSMUSG00000087411.1 ENSMUSG00000087411 ENSMUST00000134250 Gm16048 antisense Interval_6987 chr1 121567308 121568364 + 0 NA promoter-TSS (ENSMUSG00000001674.11) protein_coding-promoter-TSS (ENSMUSG00000001674.11) -8621 ENSMUSG00000001674.11 ENSMUSG00000001674 ENSMUST00000131471 Ddx18 protein_coding Interval_15633 chr10 52503799 52504550 + 0 NA Intergenic Intergenic 10603 ENSMUSG00000112464.1 ENSMUSG00000112464 ENSMUST00000217713 Gm47609 processed_pseudogene Interval_160414 chr8 109251364 109252237 + 0 NA exon (ENSMUSG00000097393.8, exon 10 of 10) lincRNA-exon (ENSMUSG00000097393.8, exon 10 of 10) 89064 ENSMUSG00000110528.1 ENSMUSG00000110528 ENSMUST00000211890 Gm1943 processed_pseudogene Interval_140562 chr6 119543285 119544924 + 0 NA exon (ENSMUSG00000030170.14, exon 1 of 5) protein_coding-exon (ENSMUSG00000030170.14, exon 1 of 5) 243 ENSMUSG00000030170.14 ENSMUSG00000030170 ENSMUST00000119369 Wnt5b protein_coding Interval_133658 chr6 8141675 8142036 + 0 NA intron (ENSMUSG00000068794.7, intron 11 of 34) protein_coding-intron (ENSMUSG00000068794.7, intron 11 of 34) 38319 ENSMUSG00000068794.7 ENSMUSG00000068794 ENSMUST00000213284 Col28a1 protein_coding Interval_65288 chr16 21245334 21246751 + 0 NA intron (ENSMUSG00000116843.1, intron 2 of 2) lincRNA-intron (ENSMUSG00000116843.1, intron 2 of 2) 7547 ENSMUSG00000116843.1 ENSMUSG00000116843 ENSMUST00000231454 Gm49750 lincRNA Interval_42026 chr13 6621806 6622469 + 0 NA promoter-TSS (ENSMUSG00000021196.14) protein_coding-promoter-TSS (ENSMUSG00000021196.14) -24258 ENSMUSG00000021196.14 ENSMUSG00000021196 ENSMUST00000136585 Pfkp protein_coding Interval_150866 chr7 116030771 116034859 + 0 NA TTS (ENSMUSG00000030664.3) antisense-TTS (ENSMUSG00000030664.3) 836 ENSMUSG00000030664.3 ENSMUSG00000030664 ENSMUST00000032900 Sox6os antisense Interval_135583 chr6 40893508 40893916 + 0 NA Intergenic Intergenic 2483 ENSMUSG00000076461.2 ENSMUSG00000076461 ENSMUST00000103262 Trbv1 TR_V_gene Interval_174241 chrX 140520057 140520901 + 0 NA Intergenic Intergenic 28050 ENSMUSG00000031431.13 ENSMUSG00000031431 ENSMUST00000152048 Tsc22d3 protein_coding Interval_163983 chr9 30303636 30304302 + 0 NA Intergenic Intergenic -11995 ENSMUSG00000096018.1 ENSMUSG00000096018 ENSMUST00000179026 Gm26435 snRNA Interval_103005 chr3 34234188 34234424 + 0 NA intron (ENSMUSG00000105265.4, intron 2 of 2) processed_transcript-intron (ENSMUSG00000105265.4, intron 2 of 4) 37442 ENSMUSG00000105265.4 ENSMUSG00000105265 ENSMUST00000197697 Sox2ot processed_transcript Interval_104856 chr3 76050972 76051345 + 0 NA Intergenic Intergenic -9435 ENSMUSG00000104223.1 ENSMUSG00000104223 ENSMUST00000194986 Gm18428 processed_pseudogene Interval_171157 chr9 114814771 114815917 + 0 NA intron (ENSMUSG00000041012.4, intron 1 of 1) protein_coding-intron (ENSMUSG00000041012.4, intron 1 of 3) -22829 ENSMUSG00000084638.1 ENSMUSG00000084638 ENSMUST00000122689 Gm23889 snRNA Interval_48835 chr13 103838405 103839142 + 0 NA intron (ENSMUSG00000021709.14, intron 20 of 26) protein_coding-intron (ENSMUSG00000021709.14, intron 20 of 25) -69425 ENSMUSG00000032621.8 ENSMUSG00000032621 ENSMUST00000211139 Srek1 protein_coding Interval_71995 chr17 27486060 27486530 + 0 NA intron (ENSMUSG00000063239.17, intron 1 of 8) protein_coding-intron (ENSMUSG00000063239.17, intron 2 of 10) -17406 ENSMUSG00000116568.1 ENSMUSG00000116568 ENSMUST00000231818 Gm49790 TEC Interval_117377 chr4 123325120 123325714 + 0 NA intron (ENSMUSG00000032726.12, intron 1 of 6) protein_coding-intron (ENSMUSG00000032726.12, intron 1 of 6) -1783 ENSMUSG00000076436.1 ENSMUSG00000076436 ENSMUST00000102640 Oxct2a protein_coding Interval_111687 chr4 25798589 25800425 + 0 NA intron (ENSMUSG00000055373.8, intron 1 of 1) protein_coding-intron (ENSMUSG00000055373.8, intron 1 of 2) 348 ENSMUSG00000055373.8 ENSMUSG00000055373 ENSMUST00000149875 Fut9 protein_coding Interval_107361 chr3 106656592 106657132 + 0 NA Intergenic Intergenic -28136 ENSMUSG00000056260.15 ENSMUSG00000056260 ENSMUST00000150888 Lrif1 protein_coding Interval_1428 chr1 23114717 23115027 + 0 NA intron (ENSMUSG00000101227.1, intron 3 of 3) sense_overlapping-intron (ENSMUSG00000101227.1, intron 3 of 3) -12619 ENSMUSG00000073730.2 ENSMUSG00000073730 ENSMUST00000073179 Ppp1r14bl protein_coding Interval_52548 chr14 47417872 47418589 + 0 NA promoter-TSS (ENSMUSG00000037544.14) protein_coding-promoter-TSS (ENSMUSG00000037544.14) 1959 ENSMUSG00000115436.1 ENSMUSG00000115436 ENSMUST00000226636 Gm8353 processed_pseudogene Interval_154291 chr8 14059861 14060075 + 0 NA intron (ENSMUSG00000051978.9, intron 3 of 4) protein_coding-intron (ENSMUSG00000051978.9, intron 3 of 5) 7850 ENSMUSG00000109982.1 ENSMUSG00000109982 ENSMUST00000210109 Gm45520 TEC Interval_78280 chr18 11494848 11495145 + 0 NA Intergenic Intergenic -129919 ENSMUSG00000117535.1 ENSMUSG00000117535 ENSMUST00000234170 Gm50067 processed_pseudogene Interval_150269 chr7 109144226 109145693 + 0 NA intron (ENSMUSG00000109107.1, intron 2 of 3) protein_coding-intron (ENSMUSG00000036111.8, intron 1 of 3) 2072 ENSMUSG00000109107.1 ENSMUSG00000109107 ENSMUST00000208480 Gm44781 antisense Interval_122076 chr5 16344997 16346093 + 0 NA intron (ENSMUSG00000040118.15, intron 23 of 37) protein_coding-intron (ENSMUSG00000040118.15, intron 24 of 38) -1364 ENSMUSG00000106177.1 ENSMUSG00000106177 ENSMUST00000197133 Gm43491 processed_pseudogene Interval_136056 chr6 50358260 50358643 + 0 NA intron (ENSMUSG00000029822.15, intron 2 of 5) protein_coding-intron (ENSMUSG00000029822.15, intron 3 of 21) -6494 ENSMUSG00000029822.15 ENSMUSG00000029822 ENSMUST00000154333 Osbpl3 protein_coding Interval_123037 chr5 29036926 29037127 + 0 NA Intergenic Intergenic -159561 ENSMUSG00000029130.12 ENSMUSG00000029130 ENSMUST00000163050 Rnf32 protein_coding Interval_42451 chr13 13670712 13672441 + 0 NA intron (ENSMUSG00000019726.12, intron 20 of 52) protein_coding-intron (ENSMUSG00000019726.12, intron 20 of 52) -12515 ENSMUSG00000019726.12 ENSMUSG00000019726 ENSMUST00000221587 Lyst protein_coding Interval_82334 chr18 70911023 70911829 + 0 NA Intergenic Intergenic -3775 ENSMUSG00000118271.1 ENSMUSG00000118271 ENSMUST00000236972 Gm50262 processed_pseudogene Interval_158136 chr8 79086822 79087403 + 0 NA intron (ENSMUSG00000071064.15, intron 4 of 13) protein_coding-intron (ENSMUSG00000071064.15, intron 4 of 14) 58525 ENSMUSG00000071064.15 ENSMUSG00000071064 ENSMUST00000129613 Zfp827 protein_coding Interval_116737 chr4 117007876 117008347 + 0 NA Intergenic Intergenic -5099 ENSMUSG00000086890.1 ENSMUSG00000086890 ENSMUST00000138729 1700021J08Rik antisense Interval_48292 chr13 97823925 97824592 + 0 NA intron (ENSMUSG00000114348.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000114348.1, intron 1 of 2) 1627 ENSMUSG00000114348.1 ENSMUSG00000114348 ENSMUST00000224296 Gm41031 lincRNA Interval_168756 chr9 86719421 86721418 + 0 NA Intergenic Intergenic 8415 ENSMUSG00000104120.1 ENSMUSG00000104120 ENSMUST00000195378 Gm37484 TEC Interval_149764 chr7 101340639 101340944 + 0 NA intron (ENSMUSG00000030688.15, intron 2 of 6) protein_coding-intron (ENSMUSG00000030688.15, intron 2 of 6) 2664 ENSMUSG00000110099.1 ENSMUSG00000110099 ENSMUST00000211610 Gm45344 processed_pseudogene Interval_145824 chr7 39621856 39622669 + 0 NA Intergenic Intergenic -8130 ENSMUSG00000070236.1 ENSMUSG00000070236 ENSMUST00000093724 Gm26327 snRNA Interval_4448 chr1 74256499 74257650 + 0 NA intron (ENSMUSG00000006304.14, intron 7 of 10) protein_coding-intron (ENSMUSG00000006304.14, intron 6 of 9) 20990 ENSMUSG00000006304.14 ENSMUSG00000006304 ENSMUST00000113819 Arpc2 protein_coding Interval_150753 chr7 114116716 114118046 + 0 NA intron (ENSMUSG00000055723.6, intron 1 of 5) protein_coding-intron (ENSMUSG00000055723.6, intron 1 of 5) 383 ENSMUSG00000055723.6 ENSMUSG00000055723 ENSMUST00000210075 Rras2 protein_coding Interval_38939 chr12 83978308 83979425 + 0 NA intron (ENSMUSG00000090843.2, intron 2 of 14) protein_coding-intron (ENSMUSG00000090843.2, intron 2 of 14) 5986 ENSMUSG00000090843.2 ENSMUSG00000090843 ENSMUST00000164935 Heatr4 protein_coding Interval_147418 chr7 66733661 66734114 + 0 NA Intergenic Intergenic -3917 ENSMUSG00000108846.1 ENSMUSG00000108846 ENSMUST00000209081 Gm10623 TEC Interval_125 GL456368.1 16652 20161 + 0 NA NA NA NA NA Interval_63599 chr15 102265432 102266005 + 0 NA Intergenic Intergenic -4845 ENSMUSG00000097050.1 ENSMUSG00000097050 ENSMUST00000181801 Gm9918 protein_coding Interval_46172 chr13 62192050 62192505 + 0 NA intron (ENSMUSG00000074867.4, intron 1 of 3) protein_coding-intron (ENSMUSG00000074867.4, intron 1 of 4) 41107 ENSMUSG00000113690.1 ENSMUSG00000113690 ENSMUST00000221857 Gm36501 processed_pseudogene Interval_158045 chr8 78284661 78285821 + 0 NA intron (ENSMUSG00000037101.16, intron 6 of 10) protein_coding-intron (ENSMUSG00000037101.16, intron 9 of 13) 71891 ENSMUSG00000037101.16 ENSMUSG00000037101 ENSMUST00000124713 Ttc29 protein_coding Interval_848 chr1 12592222 12592546 + 0 NA Intergenic Intergenic 26807 ENSMUSG00000097628.1 ENSMUSG00000097628 ENSMUST00000181461 Gm2383 processed_pseudogene Interval_18094 chr10 82329390 82330684 + 0 NA Intergenic Intergenic -13455 ENSMUSG00000044581.8 ENSMUSG00000044581 ENSMUST00000217661 4932415D10Rik protein_coding Interval_119475 chr4 137819591 137821454 + 0 NA Intergenic Intergenic -38331 ENSMUSG00000028766.10 ENSMUSG00000028766 ENSMUST00000143757 Alpl protein_coding Interval_91252 chr2 36498666 36499335 + 0 NA Intergenic Intergenic -16532 ENSMUSG00000075387.2 ENSMUSG00000075387 ENSMUST00000100154 Olfr341 protein_coding Interval_85067 chr19 22040212 22041041 + 0 NA Intergenic Intergenic 43295 ENSMUSG00000118226.1 ENSMUSG00000118226 ENSMUST00000237916 Gm50134 lincRNA Interval_62945 chr15 98076313 98077731 + 0 NA exon (ENSMUSG00000033075.17, exon 5 of 19) protein_coding-exon (ENSMUSG00000033075.17, exon 5 of 19) 7270 ENSMUSG00000088325.1 ENSMUSG00000088325 ENSMUST00000157700 Gm25668 snoRNA Interval_26982 chr11 62076604 62077670 + 0 NA promoter-TSS (ENSMUSG00000042331.13) protein_coding-promoter-TSS (ENSMUSG00000042331.13) -40282 ENSMUSG00000118644.1 ENSMUSG00000118644 ENSMUST00000239393 AL592080.1 unprocessed_pseudogene Interval_53867 chr14 62948504 62949980 + 0 NA intron (ENSMUSG00000014547.10, intron 8 of 11) protein_coding-intron (ENSMUSG00000014547.10, intron 8 of 11) -24548 ENSMUSG00000114403.1 ENSMUSG00000114403 ENSMUST00000225378 Gm21021 processed_pseudogene Interval_26408 chr11 57688462 57689256 + 0 NA intron (ENSMUSG00000020520.14, intron 1 of 2) protein_coding-intron (ENSMUSG00000020520.14, intron 1 of 11) -31033 ENSMUSG00000086933.1 ENSMUSG00000086933 ENSMUST00000143009 4933426K07Rik antisense Interval_103541 chr3 48216834 48217315 + 0 NA Intergenic Intergenic 138733 ENSMUSG00000104110.1 ENSMUSG00000104110 ENSMUST00000192186 Gm37295 TEC Interval_138648 chr6 90728449 90729927 + 0 NA intron (ENSMUSG00000034312.15, intron 1 of 13) protein_coding-intron (ENSMUSG00000034312.15, intron 1 of 13) 39457 ENSMUSG00000107999.1 ENSMUSG00000107999 ENSMUST00000204662 Gm44123 antisense Interval_87245 chr19 47163088 47163433 + 0 NA Intergenic Intergenic -5496 ENSMUSG00000094219.1 ENSMUSG00000094219 ENSMUST00000178630 Calhm3 protein_coding Interval_37567 chr12 69923155 69924236 + 0 NA intron (ENSMUSG00000021066.9, intron 1 of 2) protein_coding-intron (ENSMUSG00000021066.9, intron 2 of 14) -2204 ENSMUSG00000078370.1 ENSMUSG00000078370 ENSMUST00000082064 Gm6316 processed_pseudogene Interval_1972 chr1 35247069 35247596 + 0 NA Intergenic Intergenic -68248 ENSMUSG00000077231.1 ENSMUSG00000077231 ENSMUST00000104043 Gm25096 snoRNA Interval_133204 chr5 150521963 150522974 + 0 NA promoter-TSS (ENSMUSG00000041147.10) protein_coding-promoter-TSS (ENSMUSG00000041147.10) -164 ENSMUSG00000041147.10 ENSMUSG00000041147 ENSMUST00000201165 Brca2 protein_coding Interval_167932 chr9 74593571 74594487 + 0 NA Intergenic Intergenic 25791 ENSMUSG00000098748.1 ENSMUSG00000098748 ENSMUST00000184119 Gm27189 processed_pseudogene Interval_103482 chr3 43884338 43884783 + 0 NA Intergenic Intergenic -41009 ENSMUSG00000089251.1 ENSMUSG00000089251 ENSMUST00000158626 Gm25714 misc_RNA Interval_89256 chr2 18513139 18513736 + 0 NA Intergenic Intergenic -54689 ENSMUSG00000081181.1 ENSMUSG00000081181 ENSMUST00000120891 Gm13353 processed_pseudogene Interval_25073 chr11 43681983 43683653 + 0 NA intron (ENSMUSG00000044950.7, intron 1 of 3) protein_coding-intron (ENSMUSG00000044950.7, intron 1 of 1) 270 ENSMUSG00000044950.7 ENSMUSG00000044950 ENSMUST00000130467 Pwwp2a protein_coding Interval_31483 chr11 100951867 100952429 + 0 NA Intergenic Intergenic 18403 ENSMUSG00000004044.9 ENSMUSG00000004044 ENSMUST00000132934 Cavin1 protein_coding Interval_5163 chr1 86150680 86151724 + 0 NA intron (ENSMUSG00000094638.1, intron 2 of 5) protein_coding-intron (ENSMUSG00000094638.1, intron 2 of 5) -3597 ENSMUSG00000062590.13 ENSMUSG00000062590 ENSMUST00000126579 Armc9 protein_coding Interval_36261 chr12 40430757 40431418 + 0 NA intron (ENSMUSG00000055917.15, intron 1 of 12) protein_coding-intron (ENSMUSG00000055917.15, intron 1 of 11) -14996 ENSMUSG00000035954.10 ENSMUSG00000035954 ENSMUST00000220850 Dock4 protein_coding Interval_59311 chr15 51128499 51128712 + 0 NA Intergenic Intergenic 230966 ENSMUSG00000115339.1 ENSMUSG00000115339 ENSMUST00000226611 Gm48913 lincRNA Interval_85467 chr19 26771043 26771557 + 0 NA promoter-TSS (ENSMUSG00000024921.17) protein_coding-promoter-TSS (ENSMUSG00000024921.17) 22898 ENSMUSG00000024921.17 ENSMUSG00000024921 ENSMUST00000208984 Smarca2 protein_coding Interval_82561 chr18 75164456 75165629 + 0 NA intron (ENSMUSG00000035765.10, intron 13 of 16) protein_coding-intron (ENSMUSG00000035765.10, intron 13 of 16) 17772 ENSMUSG00000094153.2 ENSMUSG00000094153 ENSMUST00000179328 Gm8807 processed_pseudogene Interval_312 chr1 3532984 3533476 + 0 NA TTS (ENSMUSG00000103147.1) processed_pseudogene-TTS (ENSMUSG00000103147.1) 1435 ENSMUSG00000103147.1 ENSMUSG00000103147 ENSMUST00000192183 Gm7341 processed_pseudogene Interval_24904 chr11 41062602 41062840 + 0 NA Intergenic Intergenic -27598 ENSMUSG00000065916.1 ENSMUSG00000065916 ENSMUST00000083982 Gm24446 snRNA Interval_50424 chr14 12914256 12915298 + 0 NA Intergenic Intergenic 47224 ENSMUSG00000021741.4 ENSMUSG00000021741 ENSMUST00000022260 Gm5457 processed_pseudogene Interval_66150 chr16 31959000 31959538 + 0 NA TTS (ENSMUSG00000022774.13) protein_coding-TTS (ENSMUSG00000022774.13) 10668 ENSMUSG00000022774.13 ENSMUSG00000022774 ENSMUST00000115178 Ncbp2 protein_coding Interval_16716 chr10 67176618 67176864 + 0 NA intron (ENSMUSG00000037876.17, intron 2 of 25) protein_coding-intron (ENSMUSG00000037876.17, intron 2 of 25) -9007 ENSMUSG00000037876.17 ENSMUSG00000037876 ENSMUST00000173236 Jmjd1c protein_coding Interval_98685 chr2 154299801 154301024 + 0 NA Intergenic Intergenic -6815 ENSMUSG00000067996.5 ENSMUSG00000067996 ENSMUST00000088921 Bpifb9b protein_coding Interval_41745 chr12 118642425 118643288 + 0 NA Intergenic Intergenic 40179 ENSMUSG00000114034.1 ENSMUSG00000114034 ENSMUST00000222831 Gm9267 processed_pseudogene Interval_140808 chr6 121519145 121519473 + 0 NA Intergenic Intergenic -18887 ENSMUSG00000107923.1 ENSMUSG00000107923 ENSMUST00000205071 Gm43922 processed_pseudogene Interval_58101 chr15 27904990 27905842 + 0 NA intron (ENSMUSG00000022263.10, intron 2 of 35) protein_coding-intron (ENSMUSG00000022263.10, intron 3 of 56) -38185 ENSMUSG00000115161.1 ENSMUSG00000115161 ENSMUST00000228406 Gm20555 TEC Interval_159354 chr8 94002446 94002779 + 0 NA intron (ENSMUSG00000031751.14, intron 2 of 3) protein_coding-intron (ENSMUSG00000031751.14, intron 2 of 13) 9515 ENSMUSG00000031751.14 ENSMUSG00000031751 ENSMUST00000143265 Amfr protein_coding Interval_126386 chr5 87782864 87783117 + 0 NA intron (ENSMUSG00000061937.7, intron 8 of 12) protein_coding-intron (ENSMUSG00000061937.7, intron 9 of 13) -2170 ENSMUSG00000061937.7 ENSMUSG00000061937 ENSMUST00000200350 Csn1s2a protein_coding Interval_121502 chr4 156233766 156237635 + 0 NA promoter-TSS (ENSMUSG00000078485.3) protein_coding-promoter-TSS (ENSMUSG00000078485.3) -1519 ENSMUSG00000095567.8 ENSMUSG00000095567 ENSMUST00000238213 Noc2l protein_coding Interval_130564 chr5 128852800 128853526 + 0 NA intron (ENSMUSG00000029420.14, intron 1 of 20) protein_coding-intron (ENSMUSG00000029420.14, intron 1 of 21) -77613 ENSMUSG00000106522.1 ENSMUSG00000106522 ENSMUST00000199333 Gm42871 sense_intronic Interval_92714 chr2 63702033 63702948 + 0 NA Intergenic Intergenic -270296 ENSMUSG00000065837.1 ENSMUSG00000065837 ENSMUST00000083903 Gm23503 snRNA Interval_142068 chr6 136925366 136925960 + 0 NA intron (ENSMUSG00000030220.13, intron 4 of 4) protein_coding-intron (ENSMUSG00000030220.13, intron 5 of 5) 1831 ENSMUSG00000064330.9 ENSMUSG00000064330 ENSMUST00000204382 Pde6h protein_coding Interval_67850 chr16 57928582 57928883 + 0 NA intron (ENSMUSG00000116920.1, intron 2 of 3) lincRNA-intron (ENSMUSG00000116920.1, intron 2 of 3) 25799 ENSMUSG00000104285.1 ENSMUSG00000104285 ENSMUST00000194055 Gm37458 TEC Interval_134308 chr6 24805071 24805914 + 0 NA Intergenic Intergenic 14277 ENSMUSG00000029682.5 ENSMUSG00000029682 ENSMUST00000031693 Spam1 protein_coding Interval_151156 chr7 118879563 118880433 + 0 NA intron (ENSMUSG00000073856.11, intron 3 of 4) protein_coding-intron (ENSMUSG00000073856.11, intron 4 of 8) 24246 ENSMUSG00000073856.11 ENSMUSG00000073856 ENSMUST00000132148 Iqck protein_coding Interval_88061 chr19 58662315 58662812 + 0 NA intron (ENSMUSG00000046008.8, intron 1 of 1) protein_coding-intron (ENSMUSG00000046008.8, intron 1 of 1) -7843 ENSMUSG00000046008.8 ENSMUSG00000046008 ENSMUST00000238108 Pnlip protein_coding Interval_85280 chr19 24321992 24322611 + 0 NA intron (ENSMUSG00000024867.14, intron 12 of 13) protein_coding-intron (ENSMUSG00000024867.14, intron 13 of 14) 32585 ENSMUSG00000082107.1 ENSMUSG00000082107 ENSMUST00000118970 Gm16216 processed_pseudogene Interval_54499 chr14 70275850 70276317 + 0 NA intron (ENSMUSG00000022092.11, intron 1 of 14) protein_coding-intron (ENSMUSG00000022092.11, intron 1 of 13) 13194 ENSMUSG00000022092.11 ENSMUSG00000022092 ENSMUST00000228265 Ppp3cc protein_coding Interval_105655 chr3 88399873 88400310 + 0 NA promoter-TSS (ENSMUSG00000028066.15) protein_coding-promoter-TSS (ENSMUSG00000028066.15) -381 ENSMUSG00000028066.15 ENSMUSG00000028066 ENSMUST00000191622 Pmf1 protein_coding Interval_17870 chr10 80506225 80506643 + 0 NA intron (ENSMUSG00000045518.8, intron 1 of 1) protein_coding-intron (ENSMUSG00000045518.8, intron 1 of 1) -2335 ENSMUSG00000104429.1 ENSMUSG00000104429 ENSMUST00000194078 2610034O05Rik TEC Interval_7671 chr1 132947412 132948415 + 0 NA Intergenic Intergenic -2593 ENSMUSG00000102709.1 ENSMUSG00000102709 ENSMUST00000194934 Gm38308 TEC Interval_141590 chr6 129856520 129857833 + 0 NA intron (ENSMUSG00000014543.14, intron 6 of 7) protein_coding-intron (ENSMUSG00000014543.14, intron 6 of 7) -5473 ENSMUSG00000092047.1 ENSMUSG00000092047 ENSMUST00000171980 Gm17631 protein_coding Interval_107827 chr3 115925018 115925241 + 0 NA intron (ENSMUSG00000033554.17, intron 5 of 7) protein_coding-intron (ENSMUSG00000033554.17, intron 5 of 7) -11066 ENSMUSG00000105017.1 ENSMUSG00000105017 ENSMUST00000198729 Gm43107 TEC Interval_136770 chr6 59459161 59460459 + 0 NA Intergenic Intergenic -33516 ENSMUSG00000045441.5 ENSMUSG00000045441 ENSMUST00000051065 Gprin3 protein_coding Interval_1536 chr1 25020529 25020929 + 0 NA Intergenic Intergenic 6503 ENSMUSG00000099392.1 ENSMUSG00000099392 ENSMUST00000185379 Gm29414 lincRNA Interval_77240 chr17 87526238 87526559 + 0 NA Intergenic Intergenic 4346 ENSMUSG00000117361.1 ENSMUSG00000117361 ENSMUST00000234692 Gm30984 lincRNA Interval_27442 chr11 67806878 67808402 + 0 NA intron (ENSMUSG00000033044.12, intron 2 of 6) protein_coding-intron (ENSMUSG00000033044.12, intron 2 of 6) 9353 ENSMUSG00000033044.12 ENSMUSG00000033044 ENSMUST00000168612 Dhrs7c protein_coding Interval_93896 chr2 78281590 78282594 + 0 NA intron (ENSMUSG00000054510.5, intron 3 of 5) lincRNA-intron (ENSMUSG00000054510.5, intron 3 of 5) -19600 ENSMUSG00000054510.5 ENSMUSG00000054510 ENSMUST00000166653 Gm14461 lincRNA Interval_170552 chr9 108647357 108649782 + 0 NA intron (ENSMUSG00000064145.12, intron 1 of 1) protein_coding-intron (ENSMUSG00000064145.12, intron 1 of 15) 5159 ENSMUSG00000095798.1 ENSMUSG00000095798 ENSMUST00000116956 Gm26298 miRNA Interval_60863 chr15 77220100 77220857 + 0 NA intron (ENSMUSG00000033565.18, intron 1 of 3) protein_coding-intron (ENSMUSG00000033565.18, intron 2 of 12) 22073 ENSMUSG00000089242.1 ENSMUSG00000089242 ENSMUST00000158617 Gm24056 snRNA Interval_50664 chr14 17785470 17786333 + 0 NA intron (ENSMUSG00000021779.17, intron 1 of 1) protein_coding-intron (ENSMUSG00000021779.17, intron 1 of 9) -14779 ENSMUSG00000114281.1 ENSMUSG00000114281 ENSMUST00000225878 Gm48320 processed_pseudogene Interval_40735 chr12 108031955 108033485 + 0 NA Intergenic Intergenic -29306 ENSMUSG00000048251.15 ENSMUSG00000048251 ENSMUST00000109891 Bcl11b protein_coding Interval_40328 chr12 103738743 103739042 + 0 NA promoter-TSS (ENSMUSG00000071178.11) protein_coding-promoter-TSS (ENSMUSG00000071178.11) -734 ENSMUSG00000071178.11 ENSMUSG00000071178 ENSMUST00000187220 Serpina1b protein_coding Interval_64235 chr16 9451672 9452332 + 0 NA Intergenic Intergenic 293232 ENSMUSG00000116123.1 ENSMUSG00000116123 ENSMUST00000229655 Gm49451 lincRNA Interval_41750 chr12 118660892 118661203 + 0 NA Intergenic Intergenic 58370 ENSMUSG00000114034.1 ENSMUSG00000114034 ENSMUST00000222831 Gm9267 processed_pseudogene Interval_78913 chr18 21512138 21512443 + 0 NA Intergenic Intergenic -18191 ENSMUSG00000117386.1 ENSMUSG00000117386 ENSMUST00000234227 Gm4837 processed_pseudogene Interval_20457 chr10 117719763 117719974 + 0 NA Intergenic Intergenic -9846 ENSMUSG00000020184.15 ENSMUSG00000020184 ENSMUST00000151725 Mdm2 protein_coding Interval_94584 chr2 92443220 92443444 + 0 NA Intergenic Intergenic -10940 ENSMUSG00000068742.11 ENSMUSG00000068742 ENSMUST00000144842 Cry2 protein_coding Interval_4429 chr1 74098047 74099324 + 0 NA promoter-TSS (ENSMUSG00000055322.16) protein_coding-promoter-TSS (ENSMUSG00000055322.16) -9 ENSMUSG00000055322.16 ENSMUSG00000055322 ENSMUST00000190599 Tns1 protein_coding Interval_11360 chr1 181203955 181204190 + 0 NA promoter-TSS (ENSMUSG00000038733.14) protein_coding-promoter-TSS (ENSMUSG00000038733.14) 7929 ENSMUSG00000038733.14 ENSMUSG00000038733 ENSMUST00000161531 Wdr26 protein_coding Interval_94537 chr2 92007010 92008962 + 0 NA intron (ENSMUSG00000027230.9, intron 1 of 11) protein_coding-intron (ENSMUSG00000027230.9, intron 1 of 11) 16516 ENSMUSG00000027230.9 ENSMUSG00000027230 ENSMUST00000028663 Creb3l1 protein_coding Interval_107276 chr3 105223673 105224135 + 0 NA Intergenic Intergenic 157060 ENSMUSG00000051788.4 ENSMUSG00000051788 ENSMUST00000070584 4930564D02Rik protein_coding Interval_112429 chr4 41203164 41205004 + 0 NA promoter-TSS (ENSMUSG00000089265.1) snoRNA-promoter-TSS (ENSMUSG00000089265.1) -951 ENSMUSG00000089265.1 ENSMUSG00000089265 ENSMUST00000158640 Gm22888 snoRNA Interval_123252 chr5 30907288 30908275 + 0 NA promoter-TSS (ENSMUSG00000038803.7) protein_coding-promoter-TSS (ENSMUSG00000038803.7) 7 ENSMUSG00000038803.7 ENSMUSG00000038803 ENSMUST00000132034 Ost4 protein_coding Interval_50561 chr14 15437881 15439293 + 0 NA promoter-TSS (ENSMUSG00000045201.6) protein_coding-promoter-TSS (ENSMUSG00000045201.6) 432 ENSMUSG00000097547.8 ENSMUSG00000097547 ENSMUST00000181936 B230110C06Rik processed_transcript Interval_147715 chr7 72530100 72530312 + 0 NA Intergenic Intergenic -71783 ENSMUSG00000103673.1 ENSMUSG00000103673 ENSMUST00000192910 Gm37620 TEC Interval_82232 chr18 69446442 69447472 + 0 NA intron (ENSMUSG00000053477.17, intron 1 of 17) protein_coding-intron (ENSMUSG00000053477.17, intron 4 of 20) -75493 ENSMUSG00000053477.17 ENSMUSG00000053477 ENSMUST00000136019 Tcf4 protein_coding Interval_133392 chr6 4622268 4622678 + 0 NA intron (ENSMUSG00000015189.12, intron 8 of 17) protein_coding-intron (ENSMUSG00000015189.12, intron 8 of 17) -8654 ENSMUSG00000015189.12 ENSMUSG00000015189 ENSMUST00000204372 Casd1 protein_coding Interval_127258 chr5 101931692 101932240 + 0 NA intron (ENSMUSG00000043940.15, intron 14 of 15) protein_coding-intron (ENSMUSG00000043940.15, intron 15 of 66) -24641 ENSMUSG00000106451.1 ENSMUSG00000106451 ENSMUST00000196920 Gm42934 TEC Interval_21669 chr11 3585725 3586533 + 0 NA Intergenic Intergenic 39719 ENSMUSG00000084211.1 ENSMUSG00000084211 ENSMUST00000117640 Gm11949 processed_pseudogene Interval_167103 chr9 65273658 65275373 + 0 NA intron (ENSMUSG00000042254.14, intron 7 of 9) protein_coding-intron (ENSMUSG00000042254.14, intron 7 of 9) 8692 ENSMUSG00000042254.14 ENSMUSG00000042254 ENSMUST00000141382 Cilp protein_coding Interval_162202 chr8 125923572 125924233 + 0 NA intron (ENSMUSG00000031853.5, intron 1 of 9) protein_coding-intron (ENSMUSG00000031853.5, intron 1 of 9) 13452 ENSMUSG00000031853.5 ENSMUSG00000031853 ENSMUST00000034316 Map3k21 protein_coding Interval_93431 chr2 73019924 73021551 + 0 NA Intergenic Intergenic -34021 ENSMUSG00000079286.1 ENSMUSG00000079286 ENSMUST00000112062 Gm11084 protein_coding Interval_127776 chr5 107707462 107707699 + 0 NA Intergenic Intergenic -4100 ENSMUSG00000106333.1 ENSMUSG00000106333 ENSMUST00000198537 4930428O21Rik lincRNA Interval_146678 chr7 49356645 49358109 + 0 NA intron (ENSMUSG00000052512.17, intron 1 of 4) protein_coding-intron (ENSMUSG00000052512.17, intron 1 of 37) 11283 ENSMUSG00000109051.1 ENSMUSG00000109051 ENSMUST00000208060 Gm44913 TEC Interval_120293 chr4 145246190 145247174 + 0 NA intron (ENSMUSG00000028599.10, intron 1 of 3) protein_coding-intron (ENSMUSG00000028599.10, intron 1 of 9) 188 ENSMUSG00000028599.10 ENSMUSG00000028599 ENSMUST00000143055 Tnfrsf1b protein_coding Interval_15077 chr10 42390115 42392587 + 0 NA intron (ENSMUSG00000038302.14, intron 2 of 7) protein_coding-intron (ENSMUSG00000038302.14, intron 7 of 12) -44538 ENSMUSG00000083429.2 ENSMUSG00000083429 ENSMUST00000117283 Gm15198 processed_pseudogene Interval_168281 chr9 78404997 78405498 + 0 NA intron (ENSMUSG00000070291.4, intron 4 of 16) protein_coding-intron (ENSMUSG00000070291.4, intron 4 of 16) -9089 ENSMUSG00000090724.1 ENSMUSG00000090724 ENSMUST00000171096 4930542C12Rik antisense Interval_24407 chr11 33050210 33050703 + 0 NA Intergenic Intergenic -10753 ENSMUSG00000081076.3 ENSMUSG00000081076 ENSMUST00000121691 Rpsa-ps4 processed_pseudogene Interval_75521 chr17 67735749 67735938 + 0 NA intron (ENSMUSG00000032796.8, intron 3 of 15) protein_coding-intron (ENSMUSG00000032796.8, intron 3 of 62) 38578 ENSMUSG00000032796.8 ENSMUSG00000032796 ENSMUST00000233224 Lama1 protein_coding Interval_51563 chr14 30213347 30213744 + 0 NA intron (ENSMUSG00000015968.18, intron 3 of 40) protein_coding-intron (ENSMUSG00000015968.18, intron 3 of 48) 5807 ENSMUSG00000114650.1 ENSMUSG00000114650 ENSMUST00000224405 Gm47570 processed_pseudogene Interval_35109 chr12 17358899 17359298 + 0 NA exon (ENSMUSG00000061458.9, exon 7 of 21) protein_coding-exon (ENSMUSG00000061458.9, exon 7 of 21) 3706 ENSMUSG00000093037.1 ENSMUSG00000093037 ENSMUST00000175296 Mir3066 miRNA Interval_61865 chr15 84744480 84745447 + 0 NA intron (ENSMUSG00000078954.9, intron 4 of 11) protein_coding-intron (ENSMUSG00000078954.9, intron 5 of 12) -24697 ENSMUSG00000116396.1 ENSMUSG00000116396 ENSMUST00000229841 Gm20556 lincRNA Interval_171458 chr9 118476579 118476956 + 0 NA Intergenic Intergenic -2094 ENSMUSG00000032446.14 ENSMUSG00000032446 ENSMUST00000150633 Eomes protein_coding Interval_10382 chr1 170166120 170166453 + 0 NA TTS (ENSMUSG00000026670.15) protein_coding-TTS (ENSMUSG00000026670.15) 8480 ENSMUSG00000026670.15 ENSMUSG00000026670 ENSMUST00000191690 Uap1 protein_coding Interval_97982 chr2 146391486 146391711 + 0 NA intron (ENSMUSG00000037110.20, intron 22 of 41) protein_coding-intron (ENSMUSG00000037110.20, intron 21 of 40) 86051 ENSMUSG00000042938.8 ENSMUSG00000042938 ENSMUST00000122417 Gm14117 processed_pseudogene Interval_25866 chr11 52248347 52248704 + 0 NA Intergenic Intergenic 14801 ENSMUSG00000086920.1 ENSMUSG00000086920 ENSMUST00000143016 Gm12207 antisense Interval_62320 chr15 90106022 90106835 + 0 NA Intergenic Intergenic 31917 ENSMUSG00000116231.1 ENSMUSG00000116231 ENSMUST00000230688 Gm36330 lincRNA Interval_40274 chr12 103028062 103028513 + 0 NA exon (ENSMUSG00000113706.1, exon 1 of 1) processed_pseudogene-exon (ENSMUSG00000113706.1, exon 1 of 1) 125 ENSMUSG00000113706.1 ENSMUSG00000113706 ENSMUST00000223546 Gm47201 processed_pseudogene Interval_74490 chr17 51840668 51840894 + 0 NA Intergenic Intergenic -2080 ENSMUSG00000103358.1 ENSMUSG00000103358 ENSMUST00000191669 Gm37593 TEC Interval_158932 chr8 88054824 88055109 + 0 NA intron (ENSMUSG00000110719.1, intron 4 of 4) unitary_pseudogene-intron (ENSMUSG00000110719.1, intron 4 of 4) 15844 ENSMUSG00000110719.1 ENSMUSG00000110719 ENSMUST00000212350 Gm2716 unitary_pseudogene Interval_8824 chr1 151394304 151394895 + 0 NA intron (ENSMUSG00000052748.14, intron 3 of 3) protein_coding-intron (ENSMUSG00000052748.14, intron 13 of 19) 10008 ENSMUSG00000052748.14 ENSMUSG00000052748 ENSMUST00000185247 Swt1 protein_coding Interval_172641 chrX 38813957 38814347 + 0 NA intron (ENSMUSG00000051361.7, intron 1 of 3) protein_coding-intron (ENSMUSG00000051361.7, intron 1 of 3) 51409 ENSMUSG00000082723.1 ENSMUSG00000082723 ENSMUST00000122159 Gm14564 processed_pseudogene Interval_20156 chr10 115314954 115316101 + 0 NA promoter-TSS (ENSMUSG00000020132.10) protein_coding-promoter-TSS (ENSMUSG00000020132.10) 67 ENSMUSG00000020132.10 ENSMUSG00000020132 ENSMUST00000218831 Rab21 protein_coding Interval_174039 chrX 131255039 131255394 + 0 NA Intergenic Intergenic -81468 ENSMUSG00000083999.1 ENSMUSG00000083999 ENSMUST00000118716 Gm7790 processed_pseudogene Interval_77330 chr17 88030748 88030986 + 0 NA intron (ENSMUSG00000005371.15, intron 1 of 22) protein_coding-intron (ENSMUSG00000005371.15, intron 1 of 22) 34376 ENSMUSG00000005371.15 ENSMUSG00000005371 ENSMUST00000235056 Fbxo11 protein_coding Interval_91671 chr2 46923948 46924647 + 0 NA Intergenic Intergenic -317214 ENSMUSG00000089144.1 ENSMUSG00000089144 ENSMUST00000158519 Gm25264 snoRNA Interval_140205 chr6 115538637 115539595 + 0 NA Intergenic Intergenic -2216 ENSMUSG00000107704.1 ENSMUSG00000107704 ENSMUST00000203752 Gm36355 lincRNA Interval_38602 chr12 80401702 80401948 + 0 NA intron (ENSMUSG00000049106.7, intron 2 of 3) protein_coding-intron (ENSMUSG00000049106.7, intron 2 of 8) -10074 ENSMUSG00000088158.1 ENSMUSG00000088158 ENSMUST00000157533 Scarna3b scaRNA Interval_131806 chr5 139999042 139999402 + 0 NA Intergenic Intergenic 32954 ENSMUSG00000105453.1 ENSMUSG00000105453 ENSMUST00000198772 Gm43702 TEC Interval_166039 chr9 55844173 55844428 + 0 NA intron (ENSMUSG00000034007.10, intron 15 of 32) protein_coding-intron (ENSMUSG00000034007.10, intron 13 of 30) 93810 ENSMUSG00000034007.10 ENSMUSG00000034007 ENSMUST00000215323 Scaper protein_coding Interval_161083 chr8 117357140 117357586 + 0 NA intron (ENSMUSG00000034390.16, intron 1 of 20) protein_coding-intron (ENSMUSG00000034390.16, intron 1 of 20) -66053 ENSMUSG00000034390.16 ENSMUSG00000034390 ENSMUST00000212884 Cmip protein_coding Interval_5394 chr1 88464291 88464834 + 0 NA intron (ENSMUSG00000100908.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000100908.1, intron 1 of 1) -1954 ENSMUSG00000099553.1 ENSMUSG00000099553 ENSMUST00000190783 Gm29538 lincRNA Interval_51843 chr14 32707625 32708191 + 0 NA Intergenic Intergenic 21350 ENSMUSG00000101086.2 ENSMUSG00000101086 ENSMUST00000227968 Gm28651 lincRNA Interval_33649 chr11 117736613 117737033 + 0 NA intron (ENSMUSG00000025571.13, intron 8 of 20) protein_coding-intron (ENSMUSG00000025571.13, intron 8 of 21) -12408 ENSMUSG00000025571.13 ENSMUSG00000025571 ENSMUST00000141287 Tnrc6c protein_coding Interval_25983 chr11 53322176 53322561 + 0 NA Intergenic Intergenic -5032 ENSMUSG00000018239.9 ENSMUSG00000018239 ENSMUST00000141585 Zcchc10 protein_coding Interval_166572 chr9 60998134 60998371 + 0 NA Intergenic Intergenic -18817 ENSMUSG00000111290.1 ENSMUSG00000111290 ENSMUST00000216854 Gm5122 lincRNA Interval_18804 chr10 91000091 91000645 + 0 NA promoter-TSS (ENSMUSG00000019979.12) protein_coding-promoter-TSS (ENSMUSG00000019979.12) -5373 ENSMUSG00000087966.1 ENSMUSG00000087966 ENSMUST00000157341 Gm25390 snRNA Interval_40894 chr12 109223797 109224091 + 0 NA Intergenic Intergenic 95572 ENSMUSG00000092647.1 ENSMUSG00000092647 ENSMUST00000174906 Gm22234 miRNA Interval_85349 chr19 25082942 25083144 + 0 NA intron (ENSMUSG00000052085.7, intron 6 of 47) protein_coding-intron (ENSMUSG00000052085.7, intron 6 of 47) 30430 ENSMUSG00000052085.7 ENSMUSG00000052085 ENSMUST00000236576 Dock8 protein_coding Interval_122073 chr5 16168632 16169855 + 0 NA intron (ENSMUSG00000040118.15, intron 2 of 7) protein_coding-intron (ENSMUSG00000040118.15, intron 4 of 38) 62114 ENSMUSG00000105526.1 ENSMUSG00000105526 ENSMUST00000197593 Gm43490 TEC Interval_124300 chr5 43751427 43751654 + 0 NA intron (ENSMUSG00000039753.16, intron 9 of 10) protein_coding-intron (ENSMUSG00000039753.16, intron 9 of 10) 2731 ENSMUSG00000104728.1 ENSMUSG00000104728 ENSMUST00000196543 Gm42462 TEC Interval_149159 chr7 95497593 95498313 + 0 NA Intergenic Intergenic 23007 ENSMUSG00000108429.1 ENSMUSG00000108429 ENSMUST00000206820 Gm44603 processed_pseudogene Interval_57842 chr15 22956642 22956827 + 0 NA intron (ENSMUSG00000040420.15, intron 1 of 6) protein_coding-intron (ENSMUSG00000040420.15, intron 1 of 6) 21247 ENSMUSG00000091194.1 ENSMUSG00000091194 ENSMUST00000169624 Gm19840 processed_pseudogene Interval_10587 chr1 172042248 172043265 + 0 NA Intergenic Intergenic 14817 ENSMUSG00000051251.3 ENSMUSG00000051251 ENSMUST00000059794 Nhlh1 protein_coding Interval_108692 chr3 130180156 130181671 + 0 NA promoter-TSS (ENSMUSG00000058897.18) protein_coding-promoter-TSS (ENSMUSG00000058897.18) -571 ENSMUSG00000058897.18 ENSMUSG00000058897 ENSMUST00000198205 Col25a1 protein_coding Interval_131440 chr5 137202972 137203143 + 0 NA Intergenic Intergenic 9091 ENSMUSG00000094840.5 ENSMUSG00000094840 ENSMUST00000179412 Muc3a protein_coding Interval_10396 chr1 170392303 170393585 + 0 NA intron (ENSMUSG00000038473.14, intron 2 of 7) protein_coding-intron (ENSMUSG00000038473.14, intron 2 of 3) -72164 ENSMUSG00000038473.14 ENSMUSG00000038473 ENSMUST00000159665 Nos1ap protein_coding Interval_164953 chr9 43339522 43339953 + 0 NA Intergenic Intergenic 20778 ENSMUSG00000032013.6 ENSMUSG00000032013 ENSMUST00000217067 Trim29 protein_coding Interval_7133 chr1 126929705 126930874 + 0 NA Intergenic Intergenic -53674 ENSMUSG00000101600.1 ENSMUSG00000101600 ENSMUST00000188266 4930599A14Rik lincRNA Interval_22038 chr11 5925457 5925693 + 0 NA intron (ENSMUSG00000041798.15, intron 1 of 9) protein_coding-intron (ENSMUSG00000041798.15, intron 1 of 9) 10260 ENSMUSG00000084819.1 ENSMUSG00000084819 ENSMUST00000135132 Gm11967 antisense Interval_98070 chr2 147424043 147424348 + 0 NA Intergenic Intergenic -20933 ENSMUSG00000083126.1 ENSMUSG00000083126 ENSMUST00000118814 Gm14109 processed_pseudogene Interval_155847 chr8 40168635 40168840 + 0 NA Intergenic Intergenic 139192 ENSMUSG00000098431.1 ENSMUSG00000098431 ENSMUST00000183849 Mir7666 miRNA Interval_138370 chr6 87694165 87694659 + 0 NA intron (ENSMUSG00000089997.2, intron 11 of 15) protein_coding-intron (ENSMUSG00000089997.2, intron 2 of 6) -22283 ENSMUSG00000030051.10 ENSMUSG00000030051 ENSMUST00000203776 Aplf protein_coding Interval_98418 chr2 152230169 152231334 + 0 NA intron (ENSMUSG00000074698.10, intron 1 of 3) protein_coding-intron (ENSMUSG00000074698.10, intron 1 of 12) 3838 ENSMUSG00000074698.10 ENSMUSG00000074698 ENSMUST00000141597 Csnk2a1 protein_coding Interval_132301 chr5 144034091 144035085 + 0 NA Intergenic Intergenic -7918 ENSMUSG00000029618.13 ENSMUSG00000029618 ENSMUST00000110702 Ocm protein_coding Interval_25823 chr11 51967320 51969584 + 0 NA intron (ENSMUSG00000020392.8, intron 2 of 3) protein_coding-intron (ENSMUSG00000020392.8, intron 1 of 2) 560 ENSMUSG00000020392.8 ENSMUSG00000020392 ENSMUST00000127136 Cdkn2aipnl protein_coding Interval_125720 chr5 73569129 73569837 + 0 NA Intergenic Intergenic 60829 ENSMUSG00000067206.3 ENSMUSG00000067206 ENSMUST00000152215 Lrrc66 protein_coding Interval_26368 chr11 57426457 57426954 + 0 NA Intergenic Intergenic -22402 ENSMUSG00000082476.1 ENSMUSG00000082476 ENSMUST00000118824 Gm12242 processed_pseudogene Interval_174689 chrX 163026157 163026467 + 0 NA intron (ENSMUSG00000031360.14, intron 17 of 18) protein_coding-intron (ENSMUSG00000031360.14, intron 17 of 18) 43557 ENSMUSG00000088369.1 ENSMUSG00000088369 ENSMUST00000157744 Gm23501 misc_RNA Interval_90431 chr2 30406284 30407105 + 0 NA promoter-TSS (ENSMUSG00000026853.15) protein_coding-promoter-TSS (ENSMUSG00000026853.15) -7022 ENSMUSG00000087435.1 ENSMUSG00000087435 ENSMUST00000134920 Gm16323 antisense Interval_155084 chr8 26273278 26273950 + 0 NA TTS (ENSMUSG00000110417.1) lincRNA-TTS (ENSMUSG00000110417.1) 6637 ENSMUSG00000110417.1 ENSMUSG00000110417 ENSMUST00000210102 Gm31727 lincRNA Interval_133861 chr6 13648589 13648796 + 0 NA intron (ENSMUSG00000042742.7, intron 2 of 3) protein_coding-intron (ENSMUSG00000042742.7, intron 2 of 4) 29246 ENSMUSG00000042742.7 ENSMUSG00000042742 ENSMUST00000203078 Bmt2 protein_coding Interval_64731 chr16 14559041 14559629 + 0 NA Intergenic Intergenic -20886 ENSMUSG00000075395.11 ENSMUSG00000075395 ENSMUST00000100165 A630010A05Rik protein_coding Interval_3863 chr1 63937558 63937978 + 0 NA Intergenic Intergenic 19920 ENSMUSG00000082373.2 ENSMUSG00000082373 ENSMUST00000120486 Gm13754 unitary_pseudogene Interval_86328 chr19 38791393 38791820 + 0 NA intron (ENSMUSG00000024999.7, intron 19 of 20) protein_coding-intron (ENSMUSG00000024999.7, intron 19 of 20) 27631 ENSMUSG00000024999.7 ENSMUSG00000024999 ENSMUST00000025963 Noc3l protein_coding Interval_83823 chr19 4896437 4897692 + 0 NA intron (ENSMUSG00000006464.9, intron 8 of 12) protein_coding-intron (ENSMUSG00000006464.9, intron 11 of 16) -7609 ENSMUSG00000088661.1 ENSMUSG00000088661 ENSMUST00000158036 Gm25334 snRNA Interval_49854 chr13 117217139 117217522 + 0 NA intron (ENSMUSG00000021728.8, intron 1 of 3) protein_coding-intron (ENSMUSG00000021728.8, intron 1 of 3) 3742 ENSMUSG00000091423.2 ENSMUSG00000091423 ENSMUST00000238456 Gm17509 antisense Interval_37135 chr12 58823923 58824294 + 0 NA Intergenic Intergenic 10225 ENSMUSG00000112785.1 ENSMUSG00000112785 ENSMUST00000220177 Gm47645 lincRNA Interval_57239 chr15 8067327 8067602 + 0 NA intron (ENSMUSG00000039828.7, intron 5 of 17) protein_coding-intron (ENSMUSG00000039828.7, intron 5 of 17) 31745 ENSMUSG00000039828.7 ENSMUSG00000039828 ENSMUST00000227371 Wdr70 protein_coding Interval_37381 chr12 66263851 66264049 + 0 NA Intergenic Intergenic -5315 ENSMUSG00000113531.1 ENSMUSG00000113531 ENSMUST00000222565 Gm2915 processed_pseudogene Interval_25555 chr11 49738484 49740344 + 0 NA Intergenic Intergenic -32419 ENSMUSG00000092894.1 ENSMUSG00000092894 ENSMUST00000175153 Gm23813 miRNA Interval_64975 chr16 17625426 17626176 + 0 NA promoter-TSS (ENSMUSG00000005899.14) protein_coding-promoter-TSS (ENSMUSG00000005899.14) 6438 ENSMUSG00000005899.14 ENSMUSG00000005899 ENSMUST00000232270 Smpd4 protein_coding Interval_161643 chr8 121760778 121761910 + 0 NA intron (ENSMUSG00000025318.13, intron 1 of 1) protein_coding-intron (ENSMUSG00000025318.13, intron 2 of 4) 7868 ENSMUSG00000025318.13 ENSMUSG00000025318 ENSMUST00000172209 Jph3 protein_coding Interval_121380 chr4 155368448 155369142 + 0 NA Intergenic Intergenic -24055 ENSMUSG00000029053.16 ENSMUSG00000029053 ENSMUST00000105624 Prkcz protein_coding Interval_143034 chr6 148766998 148767481 + 0 NA Intergenic Intergenic 32593 ENSMUSG00000040029.15 ENSMUSG00000040029 ENSMUST00000205196 Ipo8 protein_coding Interval_114801 chr4 85363067 85363344 + 0 NA intron (ENSMUSG00000028488.15, intron 3 of 7) protein_coding-intron (ENSMUSG00000028488.15, intron 3 of 8) -13136 ENSMUSG00000028488.15 ENSMUSG00000028488 ENSMUST00000133109 Sh3gl2 protein_coding Interval_63239 chr15 99874568 99875828 + 0 NA promoter-TSS (ENSMUSG00000116518.1) processed_transcript-promoter-TSS (ENSMUSG00000116518.1) -342 ENSMUSG00000116518.1 ENSMUSG00000116518 ENSMUST00000228976 Gm49494 processed_transcript Interval_26420 chr11 57760226 57760733 + 0 NA intron (ENSMUSG00000020520.14, intron 4 of 11) protein_coding-intron (ENSMUSG00000020520.14, intron 4 of 11) -3948 ENSMUSG00000065806.1 ENSMUSG00000065806 ENSMUST00000083872 n-R5s69 rRNA Interval_86817 chr19 44069153 44070411 + 0 NA promoter-TSS (ENSMUSG00000025198.16) protein_coding-promoter-TSS (ENSMUSG00000025198.16) -2099 ENSMUSG00000025198.16 ENSMUSG00000025198 ENSMUST00000169092 Erlin1 protein_coding Interval_77040 chr17 85927953 85928830 + 0 NA intron (ENSMUSG00000117501.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000117501.1, intron 1 of 2) 188 ENSMUSG00000117501.1 ENSMUSG00000117501 ENSMUST00000234707 Gm30117 lincRNA Interval_18896 chr10 92854224 92854441 + 0 NA intron (ENSMUSG00000020014.17, intron 61 of 67) protein_coding-intron (ENSMUSG00000020014.17, intron 60 of 66) -130644 ENSMUSG00000111740.1 ENSMUSG00000111740 ENSMUST00000213901 Gm49783 TEC Interval_132702 chr5 147274456 147274774 + 0 NA exon (ENSMUSG00000029644.7, exon 2 of 2) protein_coding-exon (ENSMUSG00000029644.7, exon 2 of 2) -3113 ENSMUSG00000092570.7 ENSMUSG00000092570 ENSMUST00000172461 Plut antisense Interval_115768 chr4 103640804 103641295 + 0 NA intron (ENSMUSG00000028519.16, intron 1 of 3) protein_coding-intron (ENSMUSG00000028519.16, intron 1 of 9) -54649 ENSMUSG00000077514.1 ENSMUSG00000077514 ENSMUST00000104326 Gm25877 snoRNA Interval_123480 chr5 32800678 32801578 + 0 NA promoter-TSS (ENSMUSG00000105429.1) TEC-promoter-TSS (ENSMUSG00000105429.1) -163 ENSMUSG00000105429.1 ENSMUSG00000105429 ENSMUST00000198236 Gm43692 TEC Interval_121398 chr4 155517456 155519211 + 0 NA intron (ENSMUSG00000029064.15, intron 2 of 11) protein_coding-intron (ENSMUSG00000029064.15, intron 2 of 11) -4129 ENSMUSG00000029064.15 ENSMUSG00000029064 ENSMUST00000176308 Gnb1 protein_coding Interval_90563 chr2 31168868 31169416 + 0 NA TTS (ENSMUSG00000000194.13) protein_coding-TTS (ENSMUSG00000000194.13) 16791 ENSMUSG00000000194.13 ENSMUSG00000000194 ENSMUST00000169333 Gpr107 protein_coding Interval_84685 chr19 15173349 15173679 + 0 NA Intergenic Intergenic -212748 ENSMUSG00000063586.1 ENSMUSG00000063586 ENSMUST00000072982 Gm5513 processed_pseudogene Interval_31121 chr11 98283964 98284702 + 0 NA Intergenic Intergenic -1049 ENSMUSG00000093673.1 ENSMUSG00000093673 ENSMUST00000176721 Gm20644 sense_overlapping Interval_119782 chr4 139960150 139960734 + 0 NA exon (ENSMUSG00000078234.6, exon 1 of 1) protein_coding-exon (ENSMUSG00000078234.6, exon 1 of 1) 7178 ENSMUSG00000089294.1 ENSMUSG00000089294 ENSMUST00000158669 Mir2139 miRNA Interval_71287 chr17 21923631 21924208 + 0 NA Intergenic Intergenic -2747 ENSMUSG00000117049.1 ENSMUSG00000117049 ENSMUST00000233196 Gm6540 processed_pseudogene Interval_78838 chr18 20913564 20914010 + 0 NA Intergenic Intergenic -17694 ENSMUSG00000033382.15 ENSMUSG00000033382 ENSMUST00000224530 Trappc8 protein_coding Interval_22775 chr11 15259097 15259288 + 0 NA Intergenic Intergenic -153108 ENSMUSG00000064746.1 ENSMUSG00000064746 ENSMUST00000082812 Gm24707 snRNA Interval_64839 chr16 16352408 16352660 + 0 NA intron (ENSMUSG00000115923.1, intron 1 of 1) protein_coding-intron (ENSMUSG00000022789.15, intron 1 of 17) 3331 ENSMUSG00000115923.1 ENSMUSG00000115923 ENSMUST00000229446 Gm49521 antisense Interval_13670 chr10 20873642 20873917 + 0 NA Intergenic Intergenic 5194 ENSMUSG00000111177.1 ENSMUSG00000111177 ENSMUST00000213102 Rps2-ps3 processed_pseudogene Interval_41969 chr13 5746967 5747172 + 0 NA Intergenic Intergenic 74789 ENSMUSG00000080562.2 ENSMUSG00000080562 ENSMUST00000116912 Gm26043 miRNA Interval_53507 chr14 57915465 57915774 + 0 NA TTS (ENSMUSG00000021973.9) protein_coding-TTS (ENSMUSG00000021973.9) 4313 ENSMUSG00000021973.9 ENSMUSG00000021973 ENSMUST00000225116 Micu2 protein_coding Interval_2303 chr1 37925867 37926601 + 0 NA Intergenic Intergenic -7362 ENSMUSG00000087374.1 ENSMUSG00000087374 ENSMUST00000129513 Gm15457 antisense Interval_87744 chr19 55577727 55579001 + 0 NA intron (ENSMUSG00000024983.10, intron 8 of 8) protein_coding-intron (ENSMUSG00000024983.10, intron 7 of 7) -163900 ENSMUSG00000024985.20 ENSMUSG00000024985 ENSMUST00000148666 Tcf7l2 protein_coding Interval_108711 chr3 130607905 130608093 + 0 NA Intergenic Intergenic -9573 ENSMUSG00000019232.14 ENSMUSG00000019232 ENSMUST00000170664 Etnppl protein_coding Interval_114723 chr4 84393226 84393421 + 0 NA intron (ENSMUSG00000028487.18, intron 3 of 3) protein_coding-intron (ENSMUSG00000028487.18, intron 5 of 7) 35801 ENSMUSG00000083743.1 ENSMUSG00000083743 ENSMUST00000119071 Gm12421 processed_pseudogene Interval_75009 chr17 60012147 60012653 + 0 NA intron (ENSMUSG00000101606.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000101606.1, intron 1 of 1) 118475 ENSMUSG00000101606.1 ENSMUSG00000101606 ENSMUST00000190184 Gm29051 lincRNA Interval_111174 chr4 13889178 13889652 + 0 NA intron (ENSMUSG00000006586.15, intron 1 of 1) protein_coding-intron (ENSMUSG00000006586.15, intron 10 of 10) 105778 ENSMUSG00000086927.1 ENSMUSG00000086927 ENSMUST00000130582 Gm11823 lincRNA Interval_129766 chr5 122204478 122204724 + 0 NA Intergenic Intergenic -5512 ENSMUSG00000064267.13 ENSMUSG00000064267 ENSMUST00000100747 Hvcn1 protein_coding Interval_153858 chr8 9998611 9998803 + 0 NA Intergenic Intergenic 20820 ENSMUSG00000109054.1 ENSMUSG00000109054 ENSMUST00000207195 Gm44789 TEC Interval_106102 chr3 93113806 93114710 + 0 NA Intergenic Intergenic -13661 ENSMUSG00000103628.1 ENSMUSG00000103628 ENSMUST00000194345 Gm37361 processed_pseudogene Interval_4432 chr1 74110923 74112110 + 0 NA intron (ENSMUSG00000055322.16, intron 1 of 33) protein_coding-intron (ENSMUSG00000055322.16, intron 1 of 34) -12840 ENSMUSG00000055322.16 ENSMUSG00000055322 ENSMUST00000190599 Tns1 protein_coding Interval_103495 chr3 45077943 45078468 + 0 NA Intergenic Intergenic -82490 ENSMUSG00000099285.1 ENSMUSG00000099285 ENSMUST00000184721 Gm27989 miRNA Interval_72265 chr17 28882367 28883060 + 0 NA TTS (ENSMUSG00000043286.12) protein_coding-TTS (ENSMUSG00000043286.12) -22552 ENSMUSG00000085333.1 ENSMUSG00000085333 ENSMUST00000125317 1700030A11Rik antisense Interval_42778 chr13 19383277 19384118 + 0 NA intron (ENSMUSG00000003062.13, intron 1 of 7) protein_coding-intron (ENSMUSG00000003062.13, intron 1 of 8) 11756 ENSMUSG00000105848.1 ENSMUSG00000105848 ENSMUST00000196136 Gm42683 TEC Interval_166433 chr9 59444222 59444460 + 0 NA intron (ENSMUSG00000025234.11, intron 2 of 13) protein_coding-intron (ENSMUSG00000025234.11, intron 2 of 11) 27892 ENSMUSG00000090516.1 ENSMUSG00000090516 ENSMUST00000171632 Rps11-ps1 processed_pseudogene Interval_98223 chr2 150112587 150113569 + 0 NA Intergenic Intergenic -1502 ENSMUSG00000083055.1 ENSMUSG00000083055 ENSMUST00000119999 Gm14140 processed_pseudogene Interval_102441 chr3 26303815 26304027 + 0 NA intron (ENSMUSG00000063887.13, intron 1 of 7) protein_coding-intron (ENSMUSG00000063887.13, intron 1 of 2) -28030 ENSMUSG00000074664.3 ENSMUSG00000074664 ENSMUST00000195446 A830092H15Rik antisense Interval_158127 chr8 79045040 79045492 + 0 NA intron (ENSMUSG00000071064.15, intron 1 of 13) protein_coding-intron (ENSMUSG00000071064.15, intron 1 of 2) 16679 ENSMUSG00000071064.15 ENSMUSG00000071064 ENSMUST00000129613 Zfp827 protein_coding Interval_50406 chr14 12571068 12571916 + 0 NA intron (ENSMUSG00000054423.14, intron 6 of 28) protein_coding-intron (ENSMUSG00000054423.14, intron 6 of 28) -47176 ENSMUSG00000114453.1 ENSMUSG00000114453 ENSMUST00000225784 Gm17805 processed_pseudogene Interval_19569 chr10 103367272 103369501 + 0 NA exon (ENSMUSG00000019894.14, exon 1 of 1) protein_coding-exon (ENSMUSG00000019894.14, exon 1 of 1) -25064 ENSMUSG00000019894.14 ENSMUSG00000019894 ENSMUST00000219936 Slc6a15 protein_coding Interval_93368 chr2 72449635 72450212 + 0 NA Intergenic Intergenic -26330 ENSMUSG00000055612.15 ENSMUSG00000055612 ENSMUST00000137880 Cdca7 protein_coding Interval_15039 chr10 42142295 42144236 + 0 NA Intergenic Intergenic -87959 ENSMUSG00000085666.3 ENSMUSG00000085666 ENSMUST00000121229 Tdg-ps2 processed_pseudogene Interval_47668 chr13 90967577 90967978 + 0 NA intron (ENSMUSG00000021619.6, intron 4 of 6) protein_coding-intron (ENSMUSG00000021619.6, intron 5 of 7) 44560 ENSMUSG00000049517.8 ENSMUSG00000049517 ENSMUST00000224430 Rps23 protein_coding Interval_154180 chr8 13245193 13245858 + 0 NA exon (ENSMUSG00000031448.12, exon 4 of 7) protein_coding-exon (ENSMUSG00000031448.12, exon 4 of 7) 8637 ENSMUSG00000031448.12 ENSMUSG00000031448 ENSMUST00000171619 Adprhl1 protein_coding Interval_171404 chr9 117769312 117769520 + 0 NA intron (ENSMUSG00000039607.17, intron 1 of 3) protein_coding-intron (ENSMUSG00000039607.17, intron 1 of 3) 103265 ENSMUSG00000039607.17 ENSMUSG00000039607 ENSMUST00000210659 Rbms3 protein_coding Interval_36428 chr12 44482893 44483976 + 0 NA intron (ENSMUSG00000020598.16, intron 3 of 24) protein_coding-intron (ENSMUSG00000020598.16, intron 3 of 30) 73644 ENSMUSG00000112448.1 ENSMUSG00000112448 ENSMUST00000218248 Gm48182 TEC Interval_141466 chr6 128437557 128439099 + 0 NA promoter-TSS (ENSMUSG00000059659.7) antisense-promoter-TSS (ENSMUSG00000059659.7) -675 ENSMUSG00000030357.10 ENSMUSG00000030357 ENSMUST00000151796 Fkbp4 protein_coding Interval_136665 chr6 57355694 57356034 + 0 NA Intergenic Intergenic 7863 ENSMUSG00000115644.1 ENSMUSG00000115644 ENSMUST00000227966 Vmn1r17 protein_coding Interval_36792 chr12 54067317 54069029 + 0 NA exon (ENSMUSG00000021010.9, exon 12 of 12) protein_coding-exon (ENSMUSG00000021010.9, exon 12 of 12) 11219 ENSMUSG00000099407.1 ENSMUSG00000099407 ENSMUST00000185390 1700060O08Rik antisense Interval_138170 chr6 85869956 85870948 + 0 NA Intergenic Intergenic -1294 ENSMUSG00000033634.7 ENSMUSG00000033634 ENSMUST00000045008 Nat8f2 protein_coding Interval_41730 chr12 118496995 118497433 + 0 NA Intergenic Intergenic 7820 ENSMUSG00000065348.1 ENSMUSG00000065348 ENSMUST00000083414 Gm25577 snRNA Interval_99264 chr2 158539405 158540323 + 0 NA exon (ENSMUSG00000074625.10, exon 9 of 15) protein_coding-exon (ENSMUSG00000074625.10, exon 9 of 15) 27068 ENSMUSG00000074625.10 ENSMUSG00000074625 ENSMUST00000135838 Arhgap40 protein_coding Interval_113322 chr4 53459795 53460834 + 0 NA intron (ENSMUSG00000028412.17, intron 1 of 3) protein_coding-intron (ENSMUSG00000028412.17, intron 1 of 15) 19643 ENSMUSG00000028412.17 ENSMUSG00000028412 ENSMUST00000133582 Slc44a1 protein_coding Interval_134677 chr6 30300440 30301116 + 0 NA intron (ENSMUSG00000039159.16, intron 1 of 4) protein_coding-intron (ENSMUSG00000039159.16, intron 1 of 4) 3750 ENSMUSG00000039159.16 ENSMUSG00000039159 ENSMUST00000148744 Ube2h protein_coding Interval_145250 chr7 30920307 30920663 + 0 NA intron (ENSMUSG00000108546.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000108546.1, intron 1 of 2) 3502 ENSMUSG00000108546.1 ENSMUSG00000108546 ENSMUST00000206970 Gm44662 lincRNA Interval_112013 chr4 33235926 33236396 + 0 NA Intergenic Intergenic 11414 ENSMUSG00000040128.9 ENSMUSG00000040128 ENSMUST00000137589 Pnrc1 protein_coding Interval_112899 chr4 45889586 45890614 + 0 NA promoter-TSS (ENSMUSG00000035539.14) protein_coding-promoter-TSS (ENSMUSG00000035539.14) -203 ENSMUSG00000035539.14 ENSMUSG00000035539 ENSMUST00000151024 Ccdc180 protein_coding Interval_155597 chr8 34973037 34973572 + 0 NA intron (ENSMUSG00000109717.1, intron 2 of 2) lincRNA-intron (ENSMUSG00000109717.1, intron 2 of 2) 6570 ENSMUSG00000109717.1 ENSMUSG00000109717 ENSMUST00000209512 Gm34368 lincRNA Interval_113367 chr4 53859936 53860261 + 0 NA promoter-TSS (ENSMUSG00000065887.1) rRNA-promoter-TSS (ENSMUSG00000065887.1) -554 ENSMUSG00000065887.1 ENSMUSG00000065887 ENSMUST00000083953 n-R5s185 rRNA Interval_54315 chr14 67593660 67593960 + 0 NA Intergenic Intergenic -5018 ENSMUSG00000114514.1 ENSMUSG00000114514 ENSMUST00000224499 Gm47010 processed_pseudogene Interval_9389 chr1 156730320 156731554 + 0 NA Intergenic Intergenic -32052 ENSMUSG00000033557.17 ENSMUSG00000033557 ENSMUST00000147931 Fam20b protein_coding Interval_119627 chr4 138827270 138828056 + 0 NA promoter-TSS (ENSMUSG00000087894.1) snRNA-promoter-TSS (ENSMUSG00000087894.1) -187 ENSMUSG00000087894.1 ENSMUSG00000087894 ENSMUST00000157269 Gm25280 snRNA Interval_43271 chr13 28419330 28419984 + 0 NA exon (ENSMUSG00000113216.1, exon 1 of 2) lincRNA-exon (ENSMUSG00000113216.1, exon 1 of 2) 206 ENSMUSG00000113216.1 ENSMUSG00000113216 ENSMUST00000221933 Gm40841 lincRNA Interval_103444 chr3 41599370 41600466 + 0 NA intron (ENSMUSG00000025764.14, intron 1 of 1) protein_coding-intron (ENSMUSG00000025764.14, intron 6 of 10) -36220 ENSMUSG00000103843.1 ENSMUSG00000103843 ENSMUST00000192060 Gm31266 antisense Interval_148050 chr7 78854861 78855660 + 0 NA TTS (ENSMUSG00000108385.1) lincRNA-TTS (ENSMUSG00000108385.1) 3182 ENSMUSG00000108385.1 ENSMUSG00000108385 ENSMUST00000205902 Gm44730 lincRNA Interval_29746 chr11 86538501 86539252 + 0 NA intron (ENSMUSG00000020516.15, intron 1 of 14) protein_coding-intron (ENSMUSG00000020516.15, intron 1 of 14) 5929 ENSMUSG00000020516.15 ENSMUSG00000020516 ENSMUST00000138810 Rps6kb1 protein_coding Interval_168990 chr9 90075904 90077342 + 0 NA TTS (ENSMUSG00000032359.14) protein_coding-TTS (ENSMUSG00000032359.14) 22069 ENSMUSG00000032359.14 ENSMUSG00000032359 ENSMUST00000151219 Ctsh protein_coding Interval_128096 chr5 110844929 110845817 + 0 NA intron (ENSMUSG00000029521.7, intron 1 of 3) protein_coding-intron (ENSMUSG00000029521.7, intron 2 of 14) 3919 ENSMUSG00000029521.7 ENSMUSG00000029521 ENSMUST00000196650 Chek2 protein_coding Interval_57569 chr15 12438793 12439338 + 0 NA intron (ENSMUSG00000022197.16, intron 4 of 23) protein_coding-intron (ENSMUSG00000022197.16, intron 4 of 23) -26685 ENSMUSG00000022197.16 ENSMUSG00000022197 ENSMUST00000189746 Pdzd2 protein_coding Interval_87678 chr19 54272327 54273019 + 0 NA Intergenic Intergenic 74282 ENSMUSG00000118324.1 ENSMUSG00000118324 ENSMUST00000237525 Gm50187 TEC Interval_165539 chr9 49164308 49165217 + 0 NA Intergenic Intergenic 62034 ENSMUSG00000032268.13 ENSMUSG00000032268 ENSMUST00000170426 Tmprss5 protein_coding Interval_132627 chr5 146823863 146825028 + 0 NA Intergenic Intergenic -8701 ENSMUSG00000041453.12 ENSMUSG00000041453 ENSMUST00000135345 Rpl21 protein_coding Interval_141290 chr6 126938263 126940780 + 0 NA promoter-TSS (ENSMUSG00000030347.6) protein_coding-promoter-TSS (ENSMUSG00000030347.6) 54 ENSMUSG00000030346.16 ENSMUSG00000030346 ENSMUST00000141212 Rad51ap1 protein_coding Interval_169402 chr9 96989449 96990076 + 0 NA intron (ENSMUSG00000046997.5, intron 2 of 2) protein_coding-intron (ENSMUSG00000046997.5, intron 2 of 2) -5567 ENSMUSG00000046997.5 ENSMUSG00000046997 ENSMUST00000064445 Spsb4 protein_coding Interval_67290 chr16 45560993 45561315 + 0 NA intron (ENSMUSG00000033210.16, intron 12 of 25) protein_coding-intron (ENSMUSG00000033210.16, intron 13 of 27) 21483 ENSMUSG00000033210.16 ENSMUSG00000033210 ENSMUST00000162151 Slc9c1 protein_coding Interval_90293 chr2 29619295 29620741 + 0 NA exon (ENSMUSG00000039844.20, exon 1 of 26) protein_coding-exon (ENSMUSG00000039844.20, exon 1 of 26) -23797 ENSMUSG00000039844.20 ENSMUSG00000039844 ENSMUST00000123953 Rapgef1 protein_coding Interval_100570 chr2 170174373 170174863 + 0 NA Intergenic Intergenic -26515 ENSMUSG00000052056.14 ENSMUSG00000052056 ENSMUST00000149318 Zfp217 protein_coding Interval_135416 chr6 39237706 39237975 + 0 NA Intergenic Intergenic -2274 ENSMUSG00000107365.1 ENSMUSG00000107365 ENSMUST00000200801 Gm43479 lincRNA Interval_171029 chr9 113806484 113806687 + 0 NA intron (ENSMUSG00000033392.16, intron 1 of 4) protein_coding-intron (ENSMUSG00000033392.16, intron 7 of 15) -30287 ENSMUSG00000087992.1 ENSMUSG00000087992 ENSMUST00000157367 Gm25059 snoRNA Interval_78944 chr18 22318975 22319565 + 0 NA Intergenic Intergenic -24976 ENSMUSG00000045215.17 ENSMUSG00000045215 ENSMUST00000097655 Asxl3 protein_coding Interval_153305 chr7 143482611 143483773 + 0 NA intron (ENSMUSG00000000154.16, intron 3 of 6) protein_coding-intron (ENSMUSG00000000154.16, intron 5 of 10) 9424 ENSMUSG00000000154.16 ENSMUSG00000000154 ENSMUST00000105917 Slc22a18 protein_coding Interval_74633 chr17 53990595 53991644 + 0 NA promoter-TSS (ENSMUSG00000023943.7) protein_coding-promoter-TSS (ENSMUSG00000023943.7) -445 ENSMUSG00000023943.7 ENSMUSG00000023943 ENSMUST00000024738 Sult1c1 protein_coding Interval_10834 chr1 175866810 175867815 + 0 NA Intergenic Intergenic -13482 ENSMUSG00000039748.11 ENSMUSG00000039748 ENSMUST00000192378 Exo1 protein_coding Interval_90562 chr2 31163113 31165869 + 0 NA intron (ENSMUSG00000000194.13, intron 1 of 13) protein_coding-intron (ENSMUSG00000000194.13, intron 1 of 17) 12140 ENSMUSG00000000194.13 ENSMUSG00000000194 ENSMUST00000169333 Gpr107 protein_coding Interval_174397 chrX 151144498 151144949 + 0 NA Intergenic Intergenic -11884 ENSMUSG00000081942.1 ENSMUSG00000081942 ENSMUST00000119370 Gm15149 processed_pseudogene Interval_64981 chr16 17670313 17670669 + 0 NA intron (ENSMUSG00000012114.17, intron 8 of 17) protein_coding-intron (ENSMUSG00000012114.17, intron 8 of 17) 23791 ENSMUSG00000041617.10 ENSMUSG00000041617 ENSMUST00000183279 Ccdc74a protein_coding Interval_34076 chr11 120369655 120370404 + 0 NA exon (ENSMUSG00000025384.15, exon 10 of 10) protein_coding-exon (ENSMUSG00000025384.15, exon 10 of 10) 3487 ENSMUSG00000025380.2 ENSMUSG00000025380 ENSMUST00000130476 Fscn2 protein_coding Interval_12089 chr1 189674274 189674531 + 0 NA intron (ENSMUSG00000026605.14, intron 7 of 17) protein_coding-intron (ENSMUSG00000026605.14, intron 7 of 11) -3260 ENSMUSG00000026605.14 ENSMUSG00000026605 ENSMUST00000194165 Cenpf protein_coding Interval_121680 chr5 5155377 5155657 + 0 NA exon (ENSMUSG00000105287.1, exon 1 of 1) sense_intronic-exon (ENSMUSG00000105287.1, exon 1 of 1) 2397 ENSMUSG00000105287.1 ENSMUSG00000105287 ENSMUST00000197090 Gm43577 sense_intronic Interval_156882 chr8 61422696 61422925 + 0 NA Intergenic Intergenic -41423 ENSMUSG00000109610.1 ENSMUSG00000109610 ENSMUST00000210343 Gm7432 processed_pseudogene Interval_132497 chr5 145429711 145429980 + 0 NA Intergenic Intergenic 20197 ENSMUSG00000105764.1 ENSMUSG00000105764 ENSMUST00000199572 Gm42859 processed_pseudogene Interval_161811 chr8 122949227 122950190 + 0 NA intron (ENSMUSG00000035569.17, intron 2 of 2) protein_coding-intron (ENSMUSG00000035569.17, intron 2 of 12) 33235 ENSMUSG00000065915.1 ENSMUSG00000065915 ENSMUST00000083981 Gm24445 snRNA Interval_17810 chr10 80204332 80204836 + 0 NA Intergenic Intergenic 25102 ENSMUSG00000003070.6 ENSMUSG00000003070 ENSMUST00000003154 Efna2 protein_coding Interval_25126 chr11 44368013 44368329 + 0 NA Intergenic Intergenic 19103 ENSMUSG00000082790.1 ENSMUSG00000082790 ENSMUST00000121267 Gm12155 processed_pseudogene Interval_23756 chr11 25926134 25926433 + 0 NA intron (ENSMUSG00000032985.15, intron 2 of 2) protein_coding-intron (ENSMUSG00000032985.15, intron 2 of 6) -157142 ENSMUSG00000032985.15 ENSMUSG00000032985 ENSMUST00000125987 5730522E02Rik protein_coding Interval_171571 chr9 119262636 119262830 + 0 NA intron (ENSMUSG00000036737.12, intron 1 of 8) protein_coding-intron (ENSMUSG00000036737.12, intron 8 of 17) 2039 ENSMUSG00000036737.12 ENSMUSG00000036737 ENSMUST00000143728 Oxsr1 protein_coding Interval_77831 chr18 4302872 4303130 + 0 NA Intergenic Intergenic -8519 ENSMUSG00000117482.1 ENSMUSG00000117482 ENSMUST00000234061 Gm7400 processed_pseudogene Interval_2056 chr1 36145047 36145555 + 0 NA promoter-TSS (ENSMUSG00000098752.1) miRNA-promoter-TSS (ENSMUSG00000098752.1) -988 ENSMUSG00000098752.1 ENSMUSG00000098752 ENSMUST00000184790 Mir6897 miRNA Interval_136635 chr6 56854951 56855353 + 0 NA intron (ENSMUSG00000029781.7, intron 4 of 9) protein_coding-intron (ENSMUSG00000029781.7, intron 4 of 9) 5819 ENSMUSG00000029781.7 ENSMUSG00000029781 ENSMUST00000147159 Fkbp9 protein_coding Interval_104840 chr3 75719383 75719599 + 0 NA Intergenic Intergenic 4701 ENSMUSG00000088638.1 ENSMUSG00000088638 ENSMUST00000158013 Gm25846 snoRNA Interval_121709 chr5 5540508 5541171 + 0 NA intron (ENSMUSG00000040464.15, intron 7 of 7) protein_coding-intron (ENSMUSG00000040464.15, intron 7 of 7) 18677 ENSMUSG00000040464.15 ENSMUSG00000040464 ENSMUST00000198799 Gtpbp10 protein_coding Interval_163915 chr9 28409044 28409353 + 0 NA intron (ENSMUSG00000062257.13, intron 1 of 2) protein_coding-intron (ENSMUSG00000062257.13, intron 1 of 6) 116450 ENSMUSG00000106021.1 ENSMUSG00000106021 ENSMUST00000199274 Gm44316 miRNA Interval_108974 chr3 133792066 133792336 + 0 NA promoter-TSS (ENSMUSG00000106069.1) lincRNA-promoter-TSS (ENSMUSG00000106069.1) -697 ENSMUSG00000106069.1 ENSMUSG00000106069 ENSMUST00000198726 Gm6135 lincRNA Interval_101352 chr2 180708614 180711812 + 0 NA promoter-TSS (ENSMUSG00000027573.11) protein_coding-promoter-TSS (ENSMUSG00000027573.11) -1474 ENSMUSG00000027573.11 ENSMUSG00000027573 ENSMUST00000078687 Gid8 protein_coding Interval_60692 chr15 76195133 76196938 + 0 NA promoter-TSS (ENSMUSG00000022565.15) protein_coding-promoter-TSS (ENSMUSG00000022565.15) 10286 ENSMUSG00000022565.15 ENSMUSG00000022565 ENSMUST00000165135 Plec protein_coding Interval_56205 chr14 112365222 112367843 + 0 NA Intergenic Intergenic -37357 ENSMUSG00000115581.1 ENSMUSG00000115581 ENSMUST00000228614 Gm20127 processed_pseudogene Interval_129307 chr5 118815678 118816487 + 0 NA Intergenic Intergenic 61383 ENSMUSG00000106708.1 ENSMUSG00000106708 ENSMUST00000202790 Gm43782 lincRNA Interval_47456 chr13 84537209 84538184 + 0 NA Intergenic Intergenic 153245 ENSMUSG00000098081.1 ENSMUSG00000098081 ENSMUST00000182391 Gm26913 processed_pseudogene Interval_7170 chr1 127436944 127437688 + 0 NA intron (ENSMUSG00000036155.13, intron 10 of 15) protein_coding-intron (ENSMUSG00000036155.13, intron 12 of 17) 30540 ENSMUSG00000103390.1 ENSMUSG00000103390 ENSMUST00000195573 Gm38301 TEC Interval_145756 chr7 38073856 38076083 + 0 NA intron (ENSMUSG00000108334.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000108334.1, intron 1 of 1) -13269 ENSMUSG00000108726.1 ENSMUSG00000108726 ENSMUST00000205632 Gm30684 lincRNA Interval_81976 chr18 66560638 66561838 + 0 NA TTS (ENSMUSG00000118187.1) processed_pseudogene-TTS (ENSMUSG00000118187.1) 693 ENSMUSG00000118187.1 ENSMUSG00000118187 ENSMUST00000237927 Gm36092 processed_pseudogene Interval_156129 chr8 45001685 45001997 + 0 NA intron (ENSMUSG00000070047.14, intron 2 of 28) protein_coding-intron (ENSMUSG00000070047.14, intron 2 of 25) 20544 ENSMUSG00000097491.1 ENSMUSG00000097491 ENSMUST00000180753 Gm2366 antisense Interval_55154 chr14 78698271 78699665 + 0 NA intron (ENSMUSG00000034731.11, intron 2 of 29) protein_coding-intron (ENSMUSG00000034731.11, intron 1 of 28) -4842 ENSMUSG00000115107.1 ENSMUSG00000115107 ENSMUST00000228480 Gm18368 processed_pseudogene Interval_152962 chr7 140080526 140081472 + 0 NA TTS (ENSMUSG00000025468.15) protein_coding-TTS (ENSMUSG00000025468.15) 1513 ENSMUSG00000025468.15 ENSMUSG00000025468 ENSMUST00000211681 Caly protein_coding Interval_116653 chr4 116367045 116368058 + 0 NA intron (ENSMUSG00000003810.13, intron 3 of 5) protein_coding-intron (ENSMUSG00000003810.13, intron 4 of 28) 4181 ENSMUSG00000003810.13 ENSMUSG00000003810 ENSMUST00000151347 Mast2 protein_coding Interval_169542 chr9 99002944 99003175 + 0 NA Intergenic Intergenic 16658 ENSMUSG00000032463.10 ENSMUSG00000032463 ENSMUST00000185472 Faim protein_coding Interval_41952 chr13 5369992 5370263 + 0 NA Intergenic Intergenic -84782 ENSMUSG00000114098.1 ENSMUSG00000114098 ENSMUST00000223343 Gm40660 lincRNA Interval_90484 chr2 30736509 30736758 + 0 NA Intergenic Intergenic 15423 ENSMUSG00000093091.1 ENSMUSG00000093091 ENSMUST00000175350 Mir3089 miRNA Interval_24405 chr11 33029031 33029471 + 0 NA Intergenic Intergenic 10452 ENSMUSG00000081076.3 ENSMUSG00000081076 ENSMUST00000121691 Rpsa-ps4 processed_pseudogene Interval_86358 chr19 38964876 38965228 + 0 NA intron (ENSMUSG00000025001.11, intron 20 of 21) protein_coding-intron (ENSMUSG00000025001.11, intron 20 of 21) -11595 ENSMUSG00000114610.1 ENSMUSG00000114610 ENSMUST00000225458 Cyp2c52-ps unprocessed_pseudogene Interval_95950 chr2 118640894 118641512 + 0 NA exon (ENSMUSG00000040084.9, exon 23 of 23) protein_coding-exon (ENSMUSG00000040084.9, exon 23 of 23) 10626 ENSMUSG00000040084.9 ENSMUSG00000040084 ENSMUST00000126013 Bub1b protein_coding Interval_28999 chr11 79823448 79824831 + 0 NA intron (ENSMUSG00000086474.2, intron 2 of 4) lincRNA-intron (ENSMUSG00000086474.2, intron 2 of 4) -18967 ENSMUSG00000086474.2 ENSMUSG00000086474 ENSMUST00000162268 9130204K15Rik lincRNA Interval_163293 chr9 20651456 20652688 + 0 NA promoter-TSS (ENSMUSG00000032171.7) protein_coding-promoter-TSS (ENSMUSG00000032171.7) -23 ENSMUSG00000032171.7 ENSMUSG00000032171 ENSMUST00000034689 Pin1 protein_coding Interval_21472 chr10 128788447 128788767 + 0 NA TTS (ENSMUSG00000112429.1) antisense-TTS (ENSMUSG00000112429.1) -2303 ENSMUSG00000025355.7 ENSMUSG00000025355 ENSMUST00000218021 Mmp19 protein_coding Interval_164037 chr9 31073567 31074232 + 0 NA exon (ENSMUSG00000047412.16, exon 6 of 6) protein_coding-exon (ENSMUSG00000047412.16, exon 6 of 6) 8576 ENSMUSG00000097701.1 ENSMUSG00000097701 ENSMUST00000181215 Gm17508 lincRNA Interval_79356 chr18 31077420 31077967 + 0 NA intron (ENSMUSG00000057455.12, intron 4 of 4) protein_coding-intron (ENSMUSG00000057455.12, intron 3 of 3) 135039 ENSMUSG00000057455.12 ENSMUSG00000057455 ENSMUST00000139924 Rit2 protein_coding Interval_63372 chr15 100660619 100660889 + 0 NA intron (ENSMUSG00000098112.8, intron 1 of 9) protein_coding-intron (ENSMUSG00000098112.8, intron 2 of 3) 8751 ENSMUSG00000098112.8 ENSMUSG00000098112 ENSMUST00000183193 Bin2 protein_coding Interval_76471 chr17 80437153 80437730 + 0 NA intron (ENSMUSG00000024241.7, intron 8 of 19) protein_coding-intron (ENSMUSG00000024241.7, intron 8 of 21) 43012 ENSMUSG00000024241.7 ENSMUSG00000024241 ENSMUST00000234841 Sos1 protein_coding Interval_63795 chr15 103492793 103493187 + 0 NA intron (ENSMUSG00000022488.9, intron 10 of 11) protein_coding-intron (ENSMUSG00000022488.9, intron 29 of 30) 13842 ENSMUSG00000022488.9 ENSMUSG00000022488 ENSMUST00000230276 Nckap1l protein_coding Interval_171098 chr9 114515243 114517541 + 0 NA TTS (ENSMUSG00000097821.2) antisense-TTS (ENSMUSG00000097821.2) 695 ENSMUSG00000097821.2 ENSMUSG00000097821 ENSMUST00000238379 C130032M10Rik antisense Interval_28391 chr11 75587762 75588909 + 0 NA exon (ENSMUSG00000017781.17, exon 1 of 10) protein_coding-exon (ENSMUSG00000017781.17, exon 1 of 10) 227 ENSMUSG00000017781.17 ENSMUSG00000017781 ENSMUST00000153768 Pitpna protein_coding Interval_4618 chr1 75477291 75477628 + 0 NA TTS (ENSMUSG00000032997.16) protein_coding-TTS (ENSMUSG00000032997.16) 1287 ENSMUSG00000032997.16 ENSMUSG00000032997 ENSMUST00000124042 Chpf protein_coding Interval_93804 chr2 77018912 77020403 + 0 NA intron (ENSMUSG00000044033.16, intron 2 of 2) protein_coding-intron (ENSMUSG00000044033.16, intron 22 of 22) 3039 ENSMUSG00000044033.16 ENSMUSG00000044033 ENSMUST00000111833 Ccdc141 protein_coding Interval_45543 chr13 55739796 55740048 + 0 NA intron (ENSMUSG00000021496.12, intron 2 of 3) protein_coding-intron (ENSMUSG00000021496.12, intron 2 of 3) 12554 ENSMUSG00000021496.12 ENSMUSG00000021496 ENSMUST00000124968 Pcbd2 protein_coding Interval_5521 chr1 89524556 89524781 + 0 NA intron (ENSMUSG00000055013.16, intron 1 of 16) protein_coding-intron (ENSMUSG00000055013.16, intron 1 of 17) -38692 ENSMUSG00000088371.1 ENSMUSG00000088371 ENSMUST00000157746 Gm25180 rRNA Interval_115030 chr4 88738220 88738893 + 0 NA TTS (ENSMUSG00000086074.2) antisense-TTS (ENSMUSG00000086074.2) -15915 ENSMUSG00000117268.1 ENSMUSG00000117268 ENSMUST00000233825 Gm49884 unprocessed_pseudogene Interval_45765 chr13 57867389 57867778 + 0 NA intron (ENSMUSG00000056222.15, intron 2 of 10) protein_coding-intron (ENSMUSG00000056222.15, intron 1 of 9) 40749 ENSMUSG00000056222.15 ENSMUSG00000056222 ENSMUST00000185905 Spock1 protein_coding Interval_119841 chr4 140412836 140413178 + 0 NA Intergenic Intergenic -9517 ENSMUSG00000086437.2 ENSMUSG00000086437 ENSMUST00000135716 Gm13021 lincRNA Interval_81104 chr18 53907037 53907354 + 0 NA intron (ENSMUSG00000073563.3, intron 4 of 12) protein_coding-intron (ENSMUSG00000073563.3, intron 4 of 12) 45007 ENSMUSG00000073563.3 ENSMUSG00000073563 ENSMUST00000236399 Csnk1g3 protein_coding Interval_937 chr1 13300841 13301132 + 0 NA intron (ENSMUSG00000005886.14, intron 1 of 12) protein_coding-intron (ENSMUSG00000005886.14, intron 1 of 22) -2079 ENSMUSG00000104170.1 ENSMUSG00000104170 ENSMUST00000194357 Gm37702 TEC Interval_15020 chr10 41980538 41981231 + 0 NA intron (ENSMUSG00000071324.11, intron 4 of 16) protein_coding-intron (ENSMUSG00000071324.11, intron 5 of 17) -37332 ENSMUSG00000111103.1 ENSMUSG00000111103 ENSMUST00000214172 1700016J18Rik bidirectional_promoter_lncRNA Interval_11056 chr1 179034066 179034952 + 0 NA intron (ENSMUSG00000055067.15, intron 6 of 7) protein_coding-intron (ENSMUSG00000055067.15, intron 7 of 8) -116895 ENSMUSG00000089713.1 ENSMUSG00000089713 ENSMUST00000162545 Gm16564 antisense Interval_24849 chr11 40349197 40349713 + 0 NA Intergenic Intergenic 73899 ENSMUSG00000082295.1 ENSMUSG00000082295 ENSMUST00000121775 Gm12133 processed_pseudogene Interval_27804 chr11 70084492 70085148 + 0 NA Intergenic Intergenic -12872 ENSMUSG00000040963.15 ENSMUSG00000040963 ENSMUST00000179757 Asgr2 protein_coding Interval_90294 chr2 29629046 29630917 + 0 NA intron (ENSMUSG00000039844.20, intron 1 of 24) protein_coding-intron (ENSMUSG00000039844.20, intron 1 of 25) -13834 ENSMUSG00000039844.20 ENSMUSG00000039844 ENSMUST00000123953 Rapgef1 protein_coding Interval_165012 chr9 43879209 43880676 + 0 NA Intergenic Intergenic 26060 ENSMUSG00000088044.1 ENSMUSG00000088044 ENSMUST00000157419 Gm23326 snRNA Interval_70347 chr17 8772729 8772963 + 0 NA intron (ENSMUSG00000023868.17, intron 3 of 4) protein_coding-intron (ENSMUSG00000023868.17, intron 1 of 21) -6919 ENSMUSG00000083386.1 ENSMUSG00000083386 ENSMUST00000117823 Gm15426 processed_pseudogene Interval_14908 chr10 41004251 41004644 + 0 NA Intergenic Intergenic -30748 ENSMUSG00000111098.1 ENSMUSG00000111098 ENSMUST00000214667 Gm48057 lincRNA Interval_114582 chr4 82707411 82708667 + 0 NA Intergenic Intergenic -2289 ENSMUSG00000008575.17 ENSMUSG00000008575 ENSMUST00000152588 Nfib protein_coding Interval_144075 chr7 19319537 19320560 + 0 NA TTS (ENSMUSG00000108854.1) lincRNA-TTS (ENSMUSG00000108854.1) -10002 ENSMUSG00000003545.3 ENSMUSG00000003545 ENSMUST00000208230 Fosb protein_coding Interval_129891 chr5 122937468 122938412 + 0 NA intron (ENSMUSG00000029475.17, intron 9 of 10) protein_coding-intron (ENSMUSG00000029475.17, intron 9 of 22) -16392 ENSMUSG00000029475.17 ENSMUSG00000029475 ENSMUST00000150543 Kdm2b protein_coding Interval_14922 chr10 41150748 41151996 + 0 NA Intergenic Intergenic -13176 ENSMUSG00000111587.1 ENSMUSG00000111587 ENSMUST00000214352 Gm32338 lincRNA Interval_148509 chr7 81953825 81954168 + 0 NA Intergenic Intergenic -11714 ENSMUSG00000089111.1 ENSMUSG00000089111 ENSMUST00000158486 Gm25907 snoRNA Interval_170838 chr9 111072437 111073443 + 0 NA Intergenic Intergenic -1407 ENSMUSG00000097529.1 ENSMUSG00000097529 ENSMUST00000180929 Rp31-ps19 processed_pseudogene Interval_127096 chr5 100279588 100280205 + 0 NA intron (ENSMUSG00000085915.1, intron 2 of 4) unprocessed_pseudogene-intron (ENSMUSG00000085915.1, intron 2 of 4) 69188 ENSMUSG00000100157.6 ENSMUSG00000100157 ENSMUST00000188902 2310034O05Rik lincRNA Interval_72402 chr17 29627248 29627569 + 0 NA TTS (ENSMUSG00000090083.11) protein_coding-TTS (ENSMUSG00000090083.11) -6110 ENSMUSG00000090083.11 ENSMUSG00000090083 ENSMUST00000172800 Rnf8 protein_coding Interval_35911 chr12 31857481 31857694 + 0 NA promoter-TSS (ENSMUSG00000088242.1) scaRNA-promoter-TSS (ENSMUSG00000088242.1) -871 ENSMUSG00000088242.1 ENSMUSG00000088242 ENSMUST00000157617 Gm25913 scaRNA Interval_156998 chr8 64107191 64107426 + 0 NA intron (ENSMUSG00000053626.5, intron 5 of 8) protein_coding-intron (ENSMUSG00000053626.5, intron 5 of 20) -54097 ENSMUSG00000088132.1 ENSMUSG00000088132 ENSMUST00000157507 Gm22586 rRNA Interval_87187 chr19 46724183 46725017 + 0 NA intron (ENSMUSG00000003559.8, intron 7 of 8) protein_coding-intron (ENSMUSG00000003559.8, intron 9 of 10) 16632 ENSMUSG00000003559.8 ENSMUSG00000003559 ENSMUST00000235266 As3mt protein_coding Interval_122782 chr5 25419784 25421650 + 0 NA intron (ENSMUSG00000038056.15, intron 2 of 13) protein_coding-intron (ENSMUSG00000038056.15, intron 2 of 58) 12568 ENSMUSG00000092181.1 ENSMUSG00000092181 ENSMUST00000173716 Gm20432 processed_pseudogene Interval_17824 chr10 80281378 80282680 + 0 NA promoter-TSS (ENSMUSG00000069565.12) protein_coding-promoter-TSS (ENSMUSG00000069565.12) 977 ENSMUSG00000087672.1 ENSMUSG00000087672 ENSMUST00000135434 Gm15122 antisense Interval_56512 chr14 119672803 119673012 + 0 NA intron (ENSMUSG00000053465.6, intron 1 of 1) protein_coding-intron (ENSMUSG00000053465.6, intron 1 of 1) 28895 ENSMUSG00000115196.1 ENSMUSG00000115196 ENSMUST00000226465 Gm6212 processed_pseudogene Interval_169413 chr9 97066775 97067332 + 0 NA exon (ENSMUSG00000101365.1, exon 1 of 3) lincRNA-exon (ENSMUSG00000101365.1, exon 1 of 3) 254 ENSMUSG00000101365.1 ENSMUSG00000101365 ENSMUST00000186238 Gm19325 lincRNA Interval_68544 chr16 78534346 78535203 + 0 NA Intergenic Intergenic -25542 ENSMUSG00000116628.1 ENSMUSG00000116628 ENSMUST00000231846 4930478L05Rik antisense Interval_27417 chr11 67509445 67509747 + 0 NA intron (ENSMUSG00000033066.16, intron 1 of 6) protein_coding-intron (ENSMUSG00000033066.16, intron 1 of 13) 67870 ENSMUSG00000087058.1 ENSMUSG00000087058 ENSMUST00000152963 Gm12301 antisense Interval_140216 chr6 115609059 115609688 + 0 NA TTS (ENSMUSG00000107949.1) TEC-TTS (ENSMUSG00000107949.1) 1203 ENSMUSG00000107949.1 ENSMUSG00000107949 ENSMUST00000204720 Gm44157 TEC Interval_143419 chr7 6588727 6590813 + 0 NA Intergenic Intergenic 24929 ENSMUSG00000056696.5 ENSMUSG00000056696 ENSMUST00000070985 Olfr1350 protein_coding Interval_88481 chr2 5472459 5472744 + 0 NA intron (ENSMUSG00000039145.16, intron 2 of 2) protein_coding-intron (ENSMUSG00000039145.16, intron 2 of 10) -130970 ENSMUSG00000082013.1 ENSMUSG00000082013 ENSMUST00000117145 Gm13216 processed_pseudogene Interval_12828 chr10 5921090 5923048 + 0 NA intron (ENSMUSG00000019775.17, intron 1 of 5) protein_coding-intron (ENSMUSG00000019775.17, intron 1 of 6) 317 ENSMUSG00000019775.17 ENSMUSG00000019775 ENSMUST00000019909 Rgs17 protein_coding Interval_132581 chr5 146438237 146438512 + 0 NA intron (ENSMUSG00000029636.11, intron 3 of 9) protein_coding-intron (ENSMUSG00000029636.11, intron 3 of 9) -17235 ENSMUSG00000029636.11 ENSMUSG00000029636 ENSMUST00000238592 Wasf3 protein_coding Interval_57427 chr15 10708729 10709046 + 0 NA intron (ENSMUSG00000022246.14, intron 1 of 1) protein_coding-intron (ENSMUSG00000022246.14, intron 1 of 17) 5211 ENSMUSG00000022246.14 ENSMUSG00000022246 ENSMUST00000227366 Rai14 protein_coding Interval_16433 chr10 62848099 62849465 + 0 NA intron (ENSMUSG00000047146.17, intron 3 of 12) protein_coding-intron (ENSMUSG00000047146.17, intron 2 of 10) 11212 ENSMUSG00000112309.1 ENSMUSG00000112309 ENSMUST00000220243 Gm48353 TEC Interval_142286 chr6 140456355 140456952 + 0 NA intron (ENSMUSG00000030231.11, intron 1 of 9) protein_coding-intron (ENSMUSG00000030231.11, intron 3 of 30) 36482 ENSMUSG00000107891.1 ENSMUSG00000107891 ENSMUST00000204085 Gm5051 processed_pseudogene Interval_19834 chr10 109958582 109959036 + 0 NA intron (ENSMUSG00000020181.18, intron 3 of 40) protein_coding-intron (ENSMUSG00000020181.18, intron 1 of 38) 78970 ENSMUSG00000102410.1 ENSMUSG00000102410 ENSMUST00000192526 Gm36935 TEC Interval_164358 chr9 35817294 35817919 + 0 NA Intergenic Intergenic -17781 ENSMUSG00000104304.1 ENSMUSG00000104304 ENSMUST00000194200 Gm36974 TEC Interval_110230 chr3 154638969 154639478 + 0 NA Intergenic Intergenic -17478 ENSMUSG00000103204.1 ENSMUSG00000103204 ENSMUST00000195806 Gm38139 sense_overlapping Interval_163970 chr9 30003225 30004335 + 0 NA Intergenic Intergenic 59939 ENSMUSG00000111175.1 ENSMUSG00000111175 ENSMUST00000214849 Gm19640 processed_pseudogene Interval_148489 chr7 81706061 81707363 + 0 NA promoter-TSS (ENSMUSG00000025813.14) protein_coding-promoter-TSS (ENSMUSG00000025813.14) -13825 ENSMUSG00000025813.14 ENSMUSG00000025813 ENSMUST00000208107 Homer2 protein_coding Interval_97356 chr2 135337214 135337481 + 0 NA intron (ENSMUSG00000051177.16, intron 17 of 32) protein_coding-intron (ENSMUSG00000051177.16, intron 17 of 31) -121731 ENSMUSG00000085247.1 ENSMUSG00000085247 ENSMUST00000138303 4930545L23Rik antisense Interval_25312 chr11 46251982 46252574 + 0 NA intron (ENSMUSG00000020340.16, intron 19 of 30) protein_coding-intron (ENSMUSG00000020340.16, intron 19 of 30) -8084 ENSMUSG00000081078.1 ENSMUSG00000081078 ENSMUST00000117362 Gm12568 processed_pseudogene Interval_50833 chr14 20120109 20121156 + 0 NA intron (ENSMUSG00000045107.5, intron 1 of 1) protein_coding-intron (ENSMUSG00000045107.5, intron 1 of 1) 17902 ENSMUSG00000045107.5 ENSMUSG00000045107 ENSMUST00000226090 Saysd1 protein_coding Interval_124021 chr5 37310187 37310406 + 0 NA exon (ENSMUSG00000029122.11, exon 15 of 21) protein_coding-exon (ENSMUSG00000029122.11, exon 15 of 21) 8076 ENSMUSG00000029122.11 ENSMUSG00000029122 ENSMUST00000133376 Evc protein_coding Interval_173599 chrX 100729097 100730518 + 0 NA promoter-TSS (ENSMUSG00000019359.14) protein_coding-promoter-TSS (ENSMUSG00000019359.14) -131 ENSMUSG00000019359.14 ENSMUSG00000019359 ENSMUST00000151572 Gdpd2 protein_coding Interval_140665 chr6 120395611 120396126 + 0 NA intron (ENSMUSG00000030180.15, intron 12 of 20) protein_coding-intron (ENSMUSG00000030180.15, intron 12 of 27) -14729 ENSMUSG00000084454.1 ENSMUSG00000084454 ENSMUST00000122505 Gm24592 snRNA Interval_103174 chr3 36291465 36291716 + 0 NA Intergenic Intergenic -16930 ENSMUSG00000106140.1 ENSMUSG00000106140 ENSMUST00000198215 Gm42208 lincRNA Interval_10531 chr1 171532966 171533626 + 0 NA intron (ENSMUSG00000038209.12, intron 3 of 7) protein_coding-intron (ENSMUSG00000038209.12, intron 3 of 7) -1563 ENSMUSG00000038209.12 ENSMUSG00000038209 ENSMUST00000168184 Itln1 protein_coding Interval_155257 chr8 28996123 28996747 + 0 NA intron (ENSMUSG00000063626.6, intron 1 of 14) protein_coding-intron (ENSMUSG00000063626.6, intron 1 of 17) 91051 ENSMUSG00000109874.1 ENSMUSG00000109874 ENSMUST00000211467 Gm9911 TEC Interval_43817 chr13 37105992 37106193 + 0 NA Intergenic Intergenic -10417 ENSMUSG00000114336.1 ENSMUSG00000114336 ENSMUST00000224408 Gm18643 processed_pseudogene Interval_144907 chr7 28867327 28867925 + 0 NA intron (ENSMUSG00000108930.1, intron 2 of 2) antisense-intron (ENSMUSG00000108930.1, intron 2 of 2) 3773 ENSMUSG00000053522.11 ENSMUSG00000053522 ENSMUST00000128001 Lgals7 protein_coding Interval_97621 chr2 140830341 140830919 + 0 NA intron (ENSMUSG00000068205.14, intron 4 of 16) protein_coding-intron (ENSMUSG00000068205.14, intron 4 of 17) 125619 ENSMUSG00000081731.1 ENSMUSG00000081731 ENSMUST00000121776 Calr-ps processed_pseudogene Interval_73214 chr17 35607565 35607875 + 0 NA intron (ENSMUSG00000090509.2, intron 1 of 3) protein_coding-intron (ENSMUSG00000090509.2, intron 1 of 3) 6142 ENSMUSG00000090509.2 ENSMUSG00000090509 ENSMUST00000171166 Sfta2 protein_coding Interval_96589 chr2 125976514 125976706 + 0 NA intron (ENSMUSG00000027207.15, intron 9 of 9) protein_coding-intron (ENSMUSG00000027207.15, intron 9 of 9) -58048 ENSMUSG00000027208.14 ENSMUSG00000027208 ENSMUST00000110442 Fgf7 protein_coding Interval_100733 chr2 172206741 172207216 + 0 NA Intergenic Intergenic 30196 ENSMUSG00000105205.1 ENSMUSG00000105205 ENSMUST00000200362 Gm44301 miRNA Interval_32009 chr11 104431765 104431969 + 0 NA intron (ENSMUSG00000018412.16, intron 1 of 2) protein_coding-intron (ENSMUSG00000018412.16, intron 2 of 14) -6567 ENSMUSG00000106014.1 ENSMUSG00000106014 ENSMUST00000195891 Gm47315 miRNA Interval_44521 chr13 45614877 45615214 + 0 NA intron (ENSMUSG00000046876.16, intron 5 of 6) protein_coding-intron (ENSMUSG00000046876.16, intron 6 of 7) 68892 ENSMUSG00000000253.13 ENSMUSG00000000253 ENSMUST00000222227 Gmpr protein_coding Interval_115761 chr4 103423061 103423272 + 0 NA intron (ENSMUSG00000086136.1, intron 3 of 3) lincRNA-intron (ENSMUSG00000086136.1, intron 1 of 2) 40666 ENSMUSG00000086136.1 ENSMUSG00000086136 ENSMUST00000150345 Gm12718 lincRNA Interval_130204 chr5 124912100 124914132 + 0 NA Intergenic Intergenic 38964 ENSMUSG00000079215.8 ENSMUSG00000079215 ENSMUST00000134473 Zfp664 protein_coding Interval_46845 chr13 72326591 72327588 + 0 NA Intergenic Intergenic -23132 ENSMUSG00000113594.1 ENSMUSG00000113594 ENSMUST00000220890 Gm4052 processed_pseudogene Interval_117506 chr4 124256075 124256282 + 0 NA Intergenic Intergenic 22999 ENSMUSG00000103541.1 ENSMUSG00000103541 ENSMUST00000193103 Gm37667 TEC Interval_5992 chr1 93763415 93764484 + 0 NA intron (ENSMUSG00000026280.17, intron 1 of 1) protein_coding-intron (ENSMUSG00000026280.17, intron 1 of 12) -9169 ENSMUSG00000026279.14 ENSMUSG00000026279 ENSMUST00000189173 Thap4 protein_coding Interval_127762 chr5 107504908 107505469 + 0 NA intron (ENSMUSG00000111375.4, intron 5 of 5) protein_coding-intron (ENSMUSG00000111375.4, intron 5 of 5) -3756 ENSMUSG00000106631.2 ENSMUSG00000106631 ENSMUST00000160160 Gm42669 protein_coding Interval_128081 chr5 110770036 110771158 + 0 NA promoter-TSS (ENSMUSG00000029505.17) protein_coding-promoter-TSS (ENSMUSG00000029505.17) 120 ENSMUSG00000029505.17 ENSMUSG00000029505 ENSMUST00000146652 Ep400 protein_coding Interval_18289 chr10 84615031 84615637 + 0 NA TTS (ENSMUSG00000020034.7) protein_coding-TTS (ENSMUSG00000020034.7) 615 ENSMUSG00000089096.1 ENSMUSG00000089096 ENSMUST00000158471 Gm25657 snRNA Interval_134712 chr6 30586667 30587164 + 0 NA intron (ENSMUSG00000039070.5, intron 10 of 10) protein_coding-intron (ENSMUSG00000039070.5, intron 10 of 10) -10880 ENSMUSG00000086854.1 ENSMUSG00000086854 ENSMUST00000124153 Gm13781 antisense Interval_146097 chr7 43860380 43861843 + 0 NA Intergenic Intergenic -2772 ENSMUSG00000108527.1 ENSMUSG00000108527 ENSMUST00000206819 Gm45173 processed_pseudogene Interval_97823 chr2 144280706 144281989 + 0 NA TTS (ENSMUSG00000027424.11) protein_coding-TTS (ENSMUSG00000027424.11) 10684 ENSMUSG00000027424.11 ENSMUSG00000027424 ENSMUST00000110027 Mgme1 protein_coding Interval_108169 chr3 122121928 122122876 + 0 NA intron (ENSMUSG00000028125.14, intron 2 of 5) protein_coding-intron (ENSMUSG00000028125.14, intron 19 of 49) 30217 ENSMUSG00000105351.1 ENSMUSG00000105351 ENSMUST00000198223 Gm43157 processed_pseudogene Interval_170656 chr9 109924534 109925120 + 0 NA promoter-TSS (ENSMUSG00000105191.1) processed_pseudogene-promoter-TSS (ENSMUSG00000105191.1) -77 ENSMUSG00000105191.1 ENSMUSG00000105191 ENSMUST00000197587 Gm4644 processed_pseudogene Interval_102084 chr3 16801936 16802335 + 0 NA Intergenic Intergenic 21177 ENSMUSG00000088644.1 ENSMUSG00000088644 ENSMUST00000158019 Gm26485 snRNA Interval_48771 chr13 102987248 102988570 + 0 NA intron (ENSMUSG00000034751.17, intron 3 of 27) protein_coding-intron (ENSMUSG00000034751.17, intron 4 of 4) 108936 ENSMUSG00000034751.17 ENSMUSG00000034751 ENSMUST00000187024 Mast4 protein_coding Interval_130425 chr5 127511578 127511899 + 0 NA intron (ENSMUSG00000034324.16, intron 4 of 8) protein_coding-intron (ENSMUSG00000034324.16, intron 4 of 8) -41516 ENSMUSG00000034324.16 ENSMUSG00000034324 ENSMUST00000145748 Tmem132c protein_coding Interval_95704 chr2 114530362 114530557 + 0 NA intron (ENSMUSG00000057147.13, intron 6 of 6) protein_coding-intron (ENSMUSG00000057147.13, intron 6 of 7) -123966 ENSMUSG00000084785.1 ENSMUSG00000084785 ENSMUST00000153726 Gm13972 processed_transcript Interval_110675 chr4 6204952 6205466 + 0 NA intron (ENSMUSG00000028243.5, intron 5 of 7) protein_coding-intron (ENSMUSG00000028243.5, intron 5 of 7) 14111 ENSMUSG00000028243.5 ENSMUSG00000028243 ENSMUST00000029907 Ubxn2b protein_coding Interval_96249 chr2 120970133 120971116 + 0 NA promoter-TSS (ENSMUSG00000027272.5) protein_coding-promoter-TSS (ENSMUSG00000027272.5) 7103 ENSMUSG00000105465.1 ENSMUSG00000105465 ENSMUST00000196757 Gm44325 miRNA Interval_130084 chr5 124152961 124153162 + 0 NA intron (ENSMUSG00000029406.15, intron 2 of 24) protein_coding-intron (ENSMUSG00000029406.15, intron 1 of 23) 35750 ENSMUSG00000029404.15 ENSMUSG00000029404 ENSMUST00000196401 Arl6ip4 protein_coding Interval_137594 chr6 74265737 74267142 + 0 NA Intergenic Intergenic -74511 ENSMUSG00000093964.1 ENSMUSG00000093964 ENSMUST00000177723 Gm26179 snoRNA Interval_118255 chr4 129846596 129846985 + 0 NA TTS (ENSMUSG00000028788.14) protein_coding-TTS (ENSMUSG00000028788.14) -8281 ENSMUSG00000073753.4 ENSMUSG00000073753 ENSMUST00000097869 Gm10571 pseudogene Interval_36909 chr12 55288514 55288869 + 0 NA intron (ENSMUSG00000021022.9, intron 8 of 13) protein_coding-intron (ENSMUSG00000021022.9, intron 8 of 13) 10331 ENSMUSG00000021022.9 ENSMUSG00000021022 ENSMUST00000218116 Ppp2r3c protein_coding Interval_99476 chr2 162145868 162146800 + 0 NA intron (ENSMUSG00000053141.16, intron 6 of 29) protein_coding-intron (ENSMUSG00000053141.16, intron 6 of 30) -244479 ENSMUSG00000084919.1 ENSMUSG00000084919 ENSMUST00000151688 Ptprtos antisense Interval_1275 chr1 18936553 18936745 + 0 NA Intergenic Intergenic 33184 ENSMUSG00000088800.1 ENSMUSG00000088800 ENSMUST00000158175 Gm24075 snoRNA Interval_12267 chr1 191275220 191276022 + 0 NA intron (ENSMUSG00000103174.1, intron 1 of 5) lincRNA-intron (ENSMUSG00000103174.1, intron 1 of 5) 8443 ENSMUSG00000103174.1 ENSMUSG00000103174 ENSMUST00000192965 Gm37168 lincRNA Interval_52645 chr14 48205146 48205435 + 0 NA intron (ENSMUSG00000021846.9, intron 2 of 2) protein_coding-intron (ENSMUSG00000021846.9, intron 2 of 5) 8530 ENSMUSG00000115555.1 ENSMUSG00000115555 ENSMUST00000227419 Gm49307 TEC Interval_42595 chr13 16289990 16290265 + 0 NA Intergenic Intergenic -12289 ENSMUSG00000113038.1 ENSMUSG00000113038 ENSMUST00000222297 Gm48491 lincRNA Interval_92781 chr2 65412125 65412400 + 0 NA Intergenic Intergenic -35980 ENSMUSG00000088197.1 ENSMUSG00000088197 ENSMUST00000157572 Gm24138 snoRNA Interval_54854 chr14 75844693 75845996 + 0 NA promoter-TSS (ENSMUSG00000060126.14) protein_coding-promoter-TSS (ENSMUSG00000060126.14) -11 ENSMUSG00000060126.14 ENSMUSG00000060126 ENSMUST00000125146 Tpt1 protein_coding Interval_140627 chr6 120187354 120189322 + 0 NA intron (ENSMUSG00000041377.12, intron 1 of 3) protein_coding-intron (ENSMUSG00000041377.12, intron 1 of 3) -44588 ENSMUSG00000095086.1 ENSMUSG00000095086 ENSMUST00000180263 Gm25327 snRNA Interval_16500 chr10 63213374 63213565 + 0 NA Intergenic Intergenic 30684 ENSMUSG00000045391.4 ENSMUSG00000045391 ENSMUST00000054837 1700120B22Rik bidirectional_promoter_lncRNA Interval_38134 chr12 75869060 75869396 + 0 NA intron (ENSMUSG00000063450.14, intron 2 of 12) protein_coding-intron (ENSMUSG00000063450.14, intron 2 of 115) -39875 ENSMUSG00000092922.1 ENSMUSG00000092922 ENSMUST00000175181 Mir5101 miRNA Interval_120596 chr4 149585322 149587837 + 0 NA promoter-TSS (ENSMUSG00000039953.13) protein_coding-promoter-TSS (ENSMUSG00000039953.13) -18789 ENSMUSG00000086949.1 ENSMUSG00000086949 ENSMUST00000145263 Gm13066 antisense Interval_105173 chr3 83209438 83209617 + 0 NA intron (ENSMUSG00000102692.1, intron 1 of 19) protein_coding-intron (ENSMUSG00000102692.1, intron 1 of 19) -80281 ENSMUSG00000074517.2 ENSMUSG00000074517 ENSMUST00000047876 Gm10710 lincRNA Interval_102497 chr3 27209459 27210029 + 0 NA intron (ENSMUSG00000027698.14, intron 2 of 2) protein_coding-intron (ENSMUSG00000027698.14, intron 1 of 4) 21303 ENSMUSG00000027698.14 ENSMUSG00000027698 ENSMUST00000140872 Nceh1 protein_coding Interval_61985 chr15 85653405 85654325 + 0 NA intron (ENSMUSG00000116305.1, intron 1 of 6) lincRNA-intron (ENSMUSG00000116004.1, intron 1 of 1) 249 ENSMUSG00000116305.1 ENSMUSG00000116305 ENSMUST00000230286 Lncppara processed_transcript Interval_43257 chr13 27668232 27668438 + 0 NA promoter-TSS (ENSMUSG00000046899.7) protein_coding-promoter-TSS (ENSMUSG00000046899.7) -299 ENSMUSG00000046899.7 ENSMUSG00000046899 ENSMUST00000006660 Prl7a2 protein_coding Interval_149955 chr7 103700647 103700849 + 0 NA promoter-TSS (ENSMUSG00000082077.1) unprocessed_pseudogene-promoter-TSS (ENSMUSG00000082077.1) 6 ENSMUSG00000082077.1 ENSMUSG00000082077 ENSMUST00000117279 Olfr260-ps1 unprocessed_pseudogene Interval_45275 chr13 53811777 53812309 + 0 NA Intergenic Intergenic 35416 ENSMUSG00000114143.1 ENSMUSG00000114143 ENSMUST00000221931 Gm48548 lincRNA Interval_85089 chr19 22704033 22704612 + 0 NA intron (ENSMUSG00000052387.16, intron 3 of 24) protein_coding-intron (ENSMUSG00000052387.16, intron 3 of 26) -46283 ENSMUSG00000065507.3 ENSMUSG00000065507 ENSMUST00000083573 Mir204 miRNA Interval_136509 chr6 55056793 55057643 + 0 NA intron (ENSMUSG00000029777.10, intron 4 of 4) protein_coding-intron (ENSMUSG00000029777.10, intron 7 of 16) 9155 ENSMUSG00000029777.10 ENSMUSG00000029777 ENSMUST00000203334 Gars protein_coding Interval_72731 chr17 31805963 31806765 + 0 NA Intergenic Intergenic 16838 ENSMUSG00000117355.1 ENSMUSG00000117355 ENSMUST00000234824 Gm49999 lincRNA Interval_67090 chr16 42820043 42820434 + 0 NA intron (ENSMUSG00000075070.6, intron 1 of 1) lincRNA-intron (ENSMUSG00000075070.6, intron 1 of 1) 55502 ENSMUSG00000075070.6 ENSMUSG00000075070 ENSMUST00000130331 4932412D23Rik lincRNA Interval_164942 chr9 43267072 43267574 + 0 NA TTS (ENSMUSG00000095385.3) lincRNA-TTS (ENSMUSG00000095385.3) 2044 ENSMUSG00000095385.3 ENSMUSG00000095385 ENSMUST00000210037 D630033O11Rik lincRNA Interval_78397 chr18 12485668 12486727 + 0 NA intron (ENSMUSG00000024421.16, intron 32 of 74) protein_coding-intron (ENSMUSG00000024421.16, intron 32 of 74) 13265 ENSMUSG00000100090.1 ENSMUSG00000100090 ENSMUST00000187766 Gm29199 processed_pseudogene Interval_139089 chr6 94962868 94963623 + 0 NA Intergenic Intergenic 19411 ENSMUSG00000108187.1 ENSMUSG00000108187 ENSMUST00000203778 4930511E03Rik lincRNA Interval_110736 chr4 7722724 7723121 + 0 NA Intergenic Intergenic -36748 ENSMUSG00000085630.1 ENSMUSG00000085630 ENSMUST00000127180 Gm11795 lincRNA Interval_122894 chr5 27008289 27008986 + 0 NA intron (ENSMUSG00000061576.15, intron 1 of 25) protein_coding-intron (ENSMUSG00000061576.15, intron 1 of 25) -1016 ENSMUSG00000081970.1 ENSMUSG00000081970 ENSMUST00000120811 Gm16057 processed_pseudogene Interval_116323 chr4 109808446 109810291 + 0 NA intron (ENSMUSG00000010517.7, intron 8 of 18) protein_coding-intron (ENSMUSG00000010517.7, intron 8 of 18) -31417 ENSMUSG00000010517.7 ENSMUSG00000010517 ENSMUST00000155204 Faf1 protein_coding Interval_102516 chr3 27430279 27431399 + 0 NA intron (ENSMUSG00000039286.12, intron 24 of 26) protein_coding-intron (ENSMUSG00000039286.12, intron 23 of 25) 59488 ENSMUSG00000051136.1 ENSMUSG00000051136 ENSMUST00000057186 Ghsr protein_coding Interval_83780 chr19 4664713 4665605 + 0 NA intron (ENSMUSG00000071691.11, intron 4 of 15) protein_coding-intron (ENSMUSG00000071691.11, intron 4 of 9) -14956 ENSMUSG00000117746.1 ENSMUSG00000117746 ENSMUST00000236726 Gm50372 processed_pseudogene Interval_135994 chr6 49309789 49310891 + 0 NA Intergenic Intergenic -8967 ENSMUSG00000050786.8 ENSMUSG00000050786 ENSMUST00000114491 Ccdc126 protein_coding Interval_30229 chr11 91206146 91207000 + 0 NA Intergenic Intergenic -345225 ENSMUSG00000083764.1 ENSMUSG00000083764 ENSMUST00000118450 Gm11516 processed_pseudogene Interval_105664 chr3 88458747 88459172 + 0 NA promoter-TSS (ENSMUSG00000028064.17) protein_coding-promoter-TSS (ENSMUSG00000028064.17) -7509 ENSMUSG00000028064.17 ENSMUSG00000028064 ENSMUST00000146921 Sema4a protein_coding Interval_118364 chr4 130912569 130914386 + 0 NA intron (ENSMUSG00000028581.17, intron 1 of 7) protein_coding-intron (ENSMUSG00000028581.17, intron 1 of 1) 119 ENSMUSG00000028581.17 ENSMUSG00000028581 ENSMUST00000125332 Laptm5 protein_coding Interval_172929 chrX 56427495 56427801 + 0 NA Intergenic Intergenic -20317 ENSMUSG00000058932.6 ENSMUSG00000058932 ENSMUST00000079663 Gm2174 protein_coding Interval_93476 chr2 73393680 73394378 + 0 NA intron (ENSMUSG00000087176.1, intron 2 of 4) processed_transcript-intron (ENSMUSG00000087176.1, intron 2 of 4) 7059 ENSMUSG00000087176.1 ENSMUSG00000087176 ENSMUST00000144735 D230022J07Rik processed_transcript Interval_41227 chr12 111966392 111967584 + 0 NA promoter-TSS (ENSMUSG00000021290.6) protein_coding-promoter-TSS (ENSMUSG00000021290.6) -4280 ENSMUSG00000021290.6 ENSMUSG00000021290 ENSMUST00000222405 Atp5mpl protein_coding Interval_92255 chr2 57346120 57346391 + 0 NA intron (ENSMUSG00000026827.12, intron 9 of 16) protein_coding-intron (ENSMUSG00000026827.12, intron 9 of 16) -70569 ENSMUSG00000084292.1 ENSMUSG00000084292 ENSMUST00000118714 Gm13535 processed_pseudogene Interval_38876 chr12 83551295 83551637 + 0 NA TTS (ENSMUSG00000042628.8) protein_coding-TTS (ENSMUSG00000042628.8) 25466 ENSMUSG00000021222.9 ENSMUSG00000021222 ENSMUST00000221944 Dcaf4 protein_coding Interval_55111 chr14 78214939 78215309 + 0 NA Intergenic Intergenic 15751 ENSMUSG00000115552.1 ENSMUSG00000115552 ENSMUST00000228898 Gm48959 processed_pseudogene Interval_92402 chr2 59544220 59544913 + 0 NA Intergenic Intergenic 20118 ENSMUSG00000081157.1 ENSMUSG00000081157 ENSMUST00000118837 Gm13552 processed_pseudogene Interval_156236 chr8 46328325 46328726 + 0 NA Intergenic Intergenic 14724 ENSMUSG00000109743.1 ENSMUSG00000109743 ENSMUST00000209943 Gm45255 TEC Interval_167293 chr9 67083794 67084109 + 0 NA Intergenic Intergenic -18349 ENSMUSG00000111825.1 ENSMUSG00000111825 ENSMUST00000213227 Gm10646 lincRNA Interval_64635 chr16 13785716 13786897 + 0 NA intron (ENSMUSG00000022682.8, intron 3 of 17) protein_coding-intron (ENSMUSG00000022682.8, intron 3 of 17) 5598 ENSMUSG00000022682.8 ENSMUSG00000022682 ENSMUST00000023363 Rrn3 protein_coding Interval_141964 chr6 136120956 136121247 + 0 NA intron (ENSMUSG00000030209.14, intron 1 of 1) protein_coding-intron (ENSMUSG00000030209.14, intron 2 of 13) -51960 ENSMUSG00000097496.1 ENSMUSG00000097496 ENSMUST00000181537 Gm26653 antisense Interval_84082 chr19 7103414 7104581 + 0 NA intron (ENSMUSG00000047787.8, intron 1 of 1) protein_coding-intron (ENSMUSG00000036278.7, intron 3 of 10) 1732 ENSMUSG00000047787.8 ENSMUSG00000047787 ENSMUST00000113383 Flrt1 protein_coding Interval_73944 chr17 45607074 45607885 + 0 NA Intergenic Intergenic -5509 ENSMUSG00000079471.4 ENSMUSG00000079471 ENSMUST00000208801 Mymx protein_coding Interval_113391 chr4 54201663 54201958 + 0 NA Intergenic Intergenic 34066 ENSMUSG00000083624.1 ENSMUSG00000083624 ENSMUST00000117623 Gm12469 processed_pseudogene Interval_116092 chr4 107588219 107588988 + 0 NA intron (ENSMUSG00000034762.9, intron 1 of 4) protein_coding-intron (ENSMUSG00000034762.9, intron 4 of 10) 7400 ENSMUSG00000034762.9 ENSMUSG00000034762 ENSMUST00000125573 Glis1 protein_coding Interval_46567 chr13 67233319 67234370 + 0 NA Intergenic Intergenic -3875 ENSMUSG00000114771.1 ENSMUSG00000114771 ENSMUST00000225201 Gm49064 lincRNA Interval_79048 chr18 24168300 24169010 + 0 NA Intergenic Intergenic -46702 ENSMUSG00000047989.11 ENSMUSG00000047989 ENSMUST00000125169 Ino80c protein_coding Interval_106851 chr3 101301408 101301840 + 0 NA Intergenic Intergenic 5455 ENSMUSG00000072381.3 ENSMUSG00000072381 ENSMUST00000097146 Gm10355 processed_pseudogene Interval_55486 chr14 88496816 88497179 + 0 NA Intergenic Intergenic -25651 ENSMUSG00000050505.7 ENSMUSG00000050505 ENSMUST00000192557 Pcdh20 protein_coding Interval_89097 chr2 16271362 16271780 + 0 NA Intergenic Intergenic -248146 ENSMUSG00000103865.1 ENSMUSG00000103865 ENSMUST00000193596 Gm37416 TEC Interval_126037 chr5 77002881 77003455 + 0 NA promoter-TSS (ENSMUSG00000063820.11) protein_coding-promoter-TSS (ENSMUSG00000063820.11) -3304 ENSMUSG00000063820.11 ENSMUSG00000063820 ENSMUST00000134197 Arl9 protein_coding Interval_41760 chr12 118812501 118812769 + 0 NA Intergenic Intergenic -18803 ENSMUSG00000113169.1 ENSMUSG00000113169 ENSMUST00000220760 Gm6171 processed_pseudogene Interval_161797 chr8 122859211 122860599 + 0 NA intron (ENSMUSG00000031962.6, intron 4 of 13) protein_coding-intron (ENSMUSG00000031962.6, intron 4 of 13) -10644 ENSMUSG00000110440.1 ENSMUSG00000110440 ENSMUST00000212728 Gm45894 antisense Interval_7081 chr1 125526069 125526841 + 0 NA Intergenic Intergenic -34140 ENSMUSG00000026342.10 ENSMUSG00000026342 ENSMUST00000189443 Slc35f5 protein_coding Interval_80889 chr18 49946848 49947232 + 0 NA intron (ENSMUSG00000037416.13, intron 37 of 42) protein_coding-intron (ENSMUSG00000037416.13, intron 37 of 42) 24327 ENSMUSG00000037416.13 ENSMUSG00000037416 ENSMUST00000181042 Dmxl1 protein_coding Interval_74175 chr17 46910494 46910697 + 0 NA exon (ENSMUSG00000023978.5, exon 1 of 3) protein_coding-exon (ENSMUSG00000023978.5, exon 1 of 3) 117 ENSMUSG00000023978.5 ENSMUSG00000023978 ENSMUST00000162469 Prph2 protein_coding Interval_66371 chr16 33454017 33454253 + 0 NA intron (ENSMUSG00000022811.17, intron 4 of 7) protein_coding-intron (ENSMUSG00000022811.17, intron 4 of 8) 73272 ENSMUSG00000022811.17 ENSMUSG00000022811 ENSMUST00000089677 Zfp148 protein_coding Interval_94239 chr2 86175401 86175842 + 0 NA intron (ENSMUSG00000075200.2, intron 1 of 2) protein_coding-intron (ENSMUSG00000075200.2, intron 1 of 1) 2193 ENSMUSG00000075200.2 ENSMUSG00000075200 ENSMUST00000099906 Olfr1044 protein_coding Interval_162904 chr9 12627624 12628057 + 0 NA Intergenic Intergenic -152325 ENSMUSG00000089477.1 ENSMUSG00000089477 ENSMUST00000158852 Gm25365 rRNA Interval_144429 chr7 25099419 25100204 + 0 NA TTS (ENSMUSG00000008496.19) protein_coding-TTS (ENSMUSG00000008496.19) -2636 ENSMUSG00000098441.1 ENSMUSG00000098441 ENSMUST00000184150 Mir6537 miRNA Interval_31671 chr11 102173798 102174257 + 0 NA intron (ENSMUSG00000020922.11, intron 1 of 3) protein_coding-intron (ENSMUSG00000020922.11, intron 2 of 4) 11234 ENSMUSG00000020922.11 ENSMUSG00000020922 ENSMUST00000153276 Lsm12 protein_coding Interval_61520 chr15 82146584 82147915 + 0 NA promoter-TSS (ENSMUSG00000022463.8) protein_coding-promoter-TSS (ENSMUSG00000022463.8) 3 ENSMUSG00000022463.8 ENSMUSG00000022463 ENSMUST00000230955 Srebf2 protein_coding Interval_92975 chr2 69077189 69077812 + 0 NA intron (ENSMUSG00000027035.10, intron 8 of 10) protein_coding-intron (ENSMUSG00000027035.10, intron 8 of 9) 59404 ENSMUSG00000102662.1 ENSMUSG00000102662 ENSMUST00000193253 Gm38377 TEC Interval_125241 chr5 65606493 65608476 + 0 NA TTS (ENSMUSG00000029202.12) protein_coding-TTS (ENSMUSG00000029202.12) -9465 ENSMUSG00000106767.1 ENSMUSG00000106767 ENSMUST00000202446 Gm42727 TEC Interval_163727 chr9 24943944 24944854 + 0 NA Intergenic Intergenic -8574 ENSMUSG00000110872.1 ENSMUSG00000110872 ENSMUST00000217324 Gm48255 processed_pseudogene Interval_8936 chr1 152511037 152511875 + 0 NA TTS (ENSMUSG00000032649.14) protein_coding-TTS (ENSMUSG00000032649.14) 41588 ENSMUSG00000026482.13 ENSMUSG00000026482 ENSMUST00000149536 Rgl1 protein_coding Interval_138433 chr6 88169503 88170318 + 0 NA Intergenic Intergenic 20771 ENSMUSG00000108010.1 ENSMUSG00000108010 ENSMUST00000203855 Gm38708 lincRNA Interval_10489 chr1 171287272 171289072 + 0 NA promoter-TSS (ENSMUSG00000053483.13) protein_coding-promoter-TSS (ENSMUSG00000053483.13) -1366 ENSMUSG00000053483.13 ENSMUSG00000053483 ENSMUST00000174720 Usp21 protein_coding Interval_53989 chr14 64128198 64128448 + 0 NA TTS (ENSMUSG00000114284.1) antisense-TTS (ENSMUSG00000114284.1) 12009 ENSMUSG00000114284.1 ENSMUSG00000114284 ENSMUST00000225122 9630015K15Rik antisense Interval_155000 chr8 25588135 25588350 + 0 NA intron (ENSMUSG00000037363.9, intron 4 of 4) protein_coding-intron (ENSMUSG00000037363.9, intron 4 of 10) 6864 ENSMUSG00000110038.1 ENSMUSG00000110038 ENSMUST00000211137 Gm45570 sense_intronic Interval_78781 chr18 20598280 20598510 + 0 NA exon (ENSMUSG00000044393.15, exon 14 of 15) protein_coding-exon (ENSMUSG00000044393.15, exon 14 of 15) 40149 ENSMUSG00000044393.15 ENSMUSG00000044393 ENSMUST00000121837 Dsg2 protein_coding Interval_165039 chr9 44089474 44090229 + 0 NA intron (ENSMUSG00000032010.15, intron 4 of 13) protein_coding-intron (ENSMUSG00000032010.15, intron 3 of 12) -2617 ENSMUSG00000032010.15 ENSMUSG00000032010 ENSMUST00000176022 Usp2 protein_coding Interval_69570 chr16 94345389 94345880 + 0 NA Intergenic Intergenic 13678 ENSMUSG00000089814.1 ENSMUSG00000089814 ENSMUST00000117891 Gm15310 transcribed_processed_pseudogene Interval_170407 chr9 107719649 107719841 + 0 NA Intergenic Intergenic -34984 ENSMUSG00000034684.12 ENSMUSG00000034684 ENSMUST00000195023 Sema3f protein_coding Interval_123008 chr5 28387461 28388705 + 0 NA intron (ENSMUSG00000048271.14, intron 11 of 17) protein_coding-intron (ENSMUSG00000048271.14, intron 12 of 18) -5972 ENSMUSG00000048271.14 ENSMUSG00000048271 ENSMUST00000133313 Rbm33 protein_coding Interval_70499 chr17 11029125 11029562 + 0 NA intron (ENSMUSG00000023826.16, intron 1 of 10) protein_coding-intron (ENSMUSG00000023826.16, intron 1 of 6) 60125 ENSMUSG00000100402.1 ENSMUSG00000100402 ENSMUST00000190466 Gm28505 antisense Interval_102148 chr3 18623746 18625015 + 0 NA exon (ENSMUSG00000104918.1, exon 1 of 1) TEC-exon (ENSMUSG00000104918.1, exon 1 of 1) 2218 ENSMUSG00000104918.1 ENSMUSG00000104918 ENSMUST00000198383 Gm42944 TEC Interval_173919 chrX 111696354 111697319 + 0 NA intron (ENSMUSG00000034551.12, intron 1 of 9) protein_coding-intron (ENSMUSG00000034551.12, intron 1 of 8) 243 ENSMUSG00000034551.12 ENSMUSG00000034551 ENSMUST00000038472 Hdx protein_coding Interval_35795 chr12 29895808 29896089 + 0 NA intron (ENSMUSG00000061911.15, intron 1 of 4) protein_coding-intron (ENSMUSG00000061911.15, intron 21 of 24) -41660 ENSMUSG00000020674.17 ENSMUSG00000020674 ENSMUST00000218620 Pxdn protein_coding Interval_42798 chr13 19630827 19631561 + 0 NA exon (ENSMUSG00000021319.7, exon 5 of 5) protein_coding-exon (ENSMUSG00000021319.7, exon 5 of 5) 6439 ENSMUSG00000021319.7 ENSMUSG00000021319 ENSMUST00000222992 Sfrp4 protein_coding Interval_36692 chr12 52097247 52098555 + 0 NA intron (ENSMUSG00000035142.18, intron 1 of 4) protein_coding-intron (ENSMUSG00000035142.18, intron 1 of 10) 18887 ENSMUSG00000112063.1 ENSMUSG00000112063 ENSMUST00000218420 Gm32220 processed_pseudogene Interval_29393 chr11 83634306 83634621 + 0 NA Intergenic Intergenic 11158 ENSMUSG00000081906.2 ENSMUSG00000081906 ENSMUST00000182502 Rpl9-ps1 protein_coding Interval_124327 chr5 43990095 43990751 + 0 NA Intergenic Intergenic -8644 ENSMUSG00000048373.8 ENSMUSG00000048373 ENSMUST00000199481 Fgfbp1 protein_coding Interval_46913 chr13 73365356 73366232 + 0 NA Intergenic Intergenic -18410 ENSMUSG00000113346.2 ENSMUSG00000113346 ENSMUST00000223470 Eprn lincRNA Interval_155724 chr8 36522694 36523538 + 0 NA Intergenic Intergenic 33925 ENSMUSG00000039620.17 ENSMUSG00000039620 ENSMUST00000125492 Trmt9b protein_coding Interval_164791 chr9 41903678 41905399 + 0 NA Intergenic Intergenic -13934 ENSMUSG00000111726.1 ENSMUSG00000111726 ENSMUST00000217258 Gm40513 lincRNA Interval_125919 chr5 75779522 75779803 + 0 NA Intergenic Intergenic -20776 ENSMUSG00000106726.1 ENSMUSG00000106726 ENSMUST00000202985 Gm43100 lincRNA Interval_8734 chr1 150192888 150193809 + 0 NA Intergenic Intergenic -28400 ENSMUSG00000097754.1 ENSMUSG00000097754 ENSMUST00000181308 Ptgs2os2 lincRNA Interval_7959 chr1 134852182 134852386 + 0 NA intron (ENSMUSG00000073557.12, intron 13 of 24) protein_coding-intron (ENSMUSG00000073557.12, intron 13 of 23) 18142 ENSMUSG00000101168.1 ENSMUSG00000101168 ENSMUST00000188123 Gm28892 antisense Interval_48334 chr13 98277656 98278037 + 0 NA Intergenic Intergenic 14707 ENSMUSG00000021661.16 ENSMUSG00000021661 ENSMUST00000155629 Ankra2 protein_coding Interval_173477 chrX 94725244 94725724 + 0 NA exon (ENSMUSG00000073062.3, exon 1 of 1) protein_coding-exon (ENSMUSG00000073062.3, exon 1 of 1) 915 ENSMUSG00000073062.3 ENSMUSG00000073062 ENSMUST00000101388 Zxdb protein_coding Interval_152821 chr7 138350296 138350666 + 0 NA intron (ENSMUSG00000091002.2, intron 4 of 6) protein_coding-intron (ENSMUSG00000091002.2, intron 4 of 11) 47249 ENSMUSG00000091002.2 ENSMUSG00000091002 ENSMUST00000162222 Tcerg1l protein_coding Interval_131204 chr5 135799927 135801385 + 0 NA Intergenic Intergenic 21971 ENSMUSG00000019179.10 ENSMUSG00000019179 ENSMUST00000143747 Mdh2 protein_coding Interval_19370 chr10 98337060 98337762 + 0 NA intron (ENSMUSG00000112896.1, intron 4 of 4) lincRNA-intron (ENSMUSG00000112896.1, intron 4 of 4) 14463 ENSMUSG00000112896.1 ENSMUSG00000112896 ENSMUST00000218457 Gm8633 lincRNA Interval_137302 chr6 71197803 71198798 + 0 NA Intergenic Intergenic -1527 ENSMUSG00000054422.7 ENSMUSG00000054422 ENSMUST00000067492 Fabp1 protein_coding Interval_83722 chr19 3960218 3960728 + 0 NA intron (ENSMUSG00000037263.13, intron 1 of 8) protein_coding-intron (ENSMUSG00000037263.13, intron 1 of 9) 1667 ENSMUSG00000037263.13 ENSMUSG00000037263 ENSMUST00000025794 Aldh3b3 protein_coding Interval_105082 chr3 81048452 81049575 + 0 NA intron (ENSMUSG00000028019.9, intron 1 of 5) protein_coding-intron (ENSMUSG00000028019.9, intron 1 of 5) -8576 ENSMUSG00000085106.1 ENSMUSG00000085106 ENSMUST00000146657 Gm16000 antisense Interval_159134 chr8 90936539 90937117 + 0 NA intron (ENSMUSG00000056608.14, intron 2 of 4) protein_coding-intron (ENSMUSG00000056608.14, intron 3 of 39) -28412 ENSMUSG00000074171.2 ENSMUSG00000074171 ENSMUST00000098517 Gm6658 TEC Interval_9515 chr1 158302209 158302605 + 0 NA intron (ENSMUSG00000004031.13, intron 2 of 7) protein_coding-intron (ENSMUSG00000004031.13, intron 1 of 7) 53822 ENSMUSG00000004031.13 ENSMUSG00000004031 ENSMUST00000192709 Brinp2 protein_coding Interval_174327 chrX 144383640 144384522 + 0 NA intron (ENSMUSG00000041710.4, intron 10 of 10) protein_coding-intron (ENSMUSG00000041710.4, intron 10 of 10) -62826 ENSMUSG00000080922.1 ENSMUSG00000080922 ENSMUST00000121333 Gm2214 processed_pseudogene Interval_139374 chr6 99602042 99602260 + 0 NA intron (ENSMUSG00000030068.4, intron 1 of 1) protein_coding-intron (ENSMUSG00000030068.4, intron 3 of 5) 26260 ENSMUSG00000084547.1 ENSMUSG00000084547 ENSMUST00000122598 Gm24936 misc_RNA Interval_86707 chr19 42784932 42785671 + 0 NA Intergenic Intergenic 6191 ENSMUSG00000090235.1 ENSMUSG00000090235 ENSMUST00000160001 Gm16244 processed_transcript Interval_160436 chr8 109483943 109484919 + 0 NA Intergenic Intergenic -10613 ENSMUSG00000031727.8 ENSMUSG00000031727 ENSMUST00000212003 Pmfbp1 protein_coding Interval_80778 chr18 46994397 46994625 + 0 NA intron (ENSMUSG00000042705.9, intron 5 of 6) protein_coding-intron (ENSMUSG00000042705.9, intron 5 of 6) -9030 ENSMUSG00000087857.1 ENSMUSG00000087857 ENSMUST00000157232 Gm22791 snoRNA Interval_861 chr1 12762384 12765050 + 0 NA intron (ENSMUSG00000016918.15, intron 2 of 3) protein_coding-intron (ENSMUSG00000016918.15, intron 2 of 21) 44253 ENSMUSG00000016918.15 ENSMUSG00000016918 ENSMUST00000185780 Sulf1 protein_coding Interval_72451 chr17 29870001 29870841 + 0 NA intron (ENSMUSG00000043557.16, intron 1 of 4) protein_coding-intron (ENSMUSG00000043557.16, intron 1 of 15) -19663 ENSMUSG00000086534.2 ENSMUSG00000086534 ENSMUST00000149552 Gm16758 antisense Interval_18874 chr10 91654430 91655042 + 0 NA Intergenic Intergenic -13846 ENSMUSG00000111782.1 ENSMUSG00000111782 ENSMUST00000216093 Gm47091 processed_pseudogene Interval_29118 chr11 80428264 80429406 + 0 NA intron (ENSMUSG00000017428.16, intron 1 of 8) protein_coding-intron (ENSMUSG00000017428.16, intron 1 of 13) 149 ENSMUSG00000017428.16 ENSMUSG00000017428 ENSMUST00000125591 Psmd11 protein_coding Interval_150578 chr7 112614793 112615756 + 0 NA intron (ENSMUSG00000085945.3, intron 3 of 3) bidirectional_promoter_lncRNA-intron (ENSMUSG00000085945.3, intron 3 of 3) 2951 ENSMUSG00000093002.1 ENSMUSG00000093002 ENSMUST00000175261 Gm24154 snoRNA Interval_44101 chr13 40897980 40898911 + 0 NA intron (ENSMUSG00000021360.16, intron 1 of 2) protein_coding-intron (ENSMUSG00000021360.16, intron 1 of 2) 13762 ENSMUSG00000114601.1 ENSMUSG00000114601 ENSMUST00000225964 Gm48188 processed_pseudogene Interval_97172 chr2 131995403 131996208 + 0 NA exon (ENSMUSG00000027339.15, exon 11 of 11) protein_coding-exon (ENSMUSG00000027339.15, exon 11 of 11) 25368 ENSMUSG00000027339.15 ENSMUSG00000027339 ENSMUST00000140791 Rassf2 protein_coding Interval_149723 chr7 100941165 100941404 + 0 NA intron (ENSMUSG00000048779.5, intron 1 of 1) protein_coding-intron (ENSMUSG00000048779.5, intron 1 of 2) -9533 ENSMUSG00000109132.1 ENSMUSG00000109132 ENSMUST00000208262 Gm44545 TEC Interval_103368 chr3 40491759 40492548 + 0 NA Intergenic Intergenic 17621 ENSMUSG00000037884.6 ENSMUSG00000037884 ENSMUST00000202778 1700017G19Rik lincRNA Interval_56560 chr14 120348003 120348439 + 0 NA intron (ENSMUSG00000022139.17, intron 2 of 2) protein_coding-intron (ENSMUSG00000022139.17, intron 2 of 8) -31020 ENSMUSG00000022139.17 ENSMUSG00000022139 ENSMUST00000227153 Mbnl2 protein_coding Interval_6301 chr1 105707009 105707205 + 0 NA intron (ENSMUSG00000026319.13, intron 11 of 21) protein_coding-intron (ENSMUSG00000026319.13, intron 11 of 28) -1466 ENSMUSG00000104044.1 ENSMUSG00000104044 ENSMUST00000192363 Gm37566 TEC Interval_68418 chr16 76312358 76313285 + 0 NA intron (ENSMUSG00000048490.14, intron 2 of 2) protein_coding-intron (ENSMUSG00000048490.14, intron 3 of 3) 61005 ENSMUSG00000048490.14 ENSMUSG00000048490 ENSMUST00000145649 Nrip1 protein_coding Interval_86312 chr19 38615054 38615816 + 0 NA intron (ENSMUSG00000024998.17, intron 1 of 2) protein_coding-intron (ENSMUSG00000024998.17, intron 1 of 31) 88889 ENSMUSG00000117935.1 ENSMUSG00000117935 ENSMUST00000237606 Gm8717 processed_pseudogene Interval_61331 chr15 80900582 80900799 + 0 NA intron (ENSMUSG00000047888.10, intron 6 of 16) protein_coding-intron (ENSMUSG00000047888.10, intron 14 of 24) -22374 ENSMUSG00000047888.10 ENSMUSG00000047888 ENSMUST00000228525 Tnrc6b protein_coding Interval_38671 chr12 80953415 80953631 + 0 NA exon (ENSMUSG00000021135.8, exon 5 of 5) protein_coding-exon (ENSMUSG00000021135.8, exon 5 of 5) 7991 ENSMUSG00000021134.17 ENSMUSG00000021134 ENSMUST00000151036 Srsf5 protein_coding Interval_15476 chr10 48231445 48231936 + 0 NA Intergenic Intergenic 179977 ENSMUSG00000112062.1 ENSMUSG00000112062 ENSMUST00000219040 Gm47353 TEC Interval_133511 chr6 6058618 6058804 + 0 NA intron (ENSMUSG00000015112.15, intron 14 of 17) protein_coding-intron (ENSMUSG00000015112.15, intron 14 of 17) -81318 ENSMUSG00000085416.1 ENSMUSG00000085416 ENSMUST00000130004 1700019G24Rik antisense Interval_8922 chr1 152241579 152243029 + 0 NA Intergenic Intergenic 50224 ENSMUSG00000103744.1 ENSMUSG00000103744 ENSMUST00000194334 Gm38238 TEC Interval_27002 chr11 62311859 62312809 + 0 NA intron (ENSMUSG00000042298.18, intron 6 of 7) protein_coding-intron (ENSMUSG00000042298.18, intron 8 of 9) -7164 ENSMUSG00000081340.1 ENSMUSG00000081340 ENSMUST00000119805 Gm12275 processed_pseudogene Interval_77260 chr17 87629156 87629895 + 0 NA Intergenic Intergenic -6454 ENSMUSG00000045394.9 ENSMUSG00000045394 ENSMUST00000234623 Epcam protein_coding Interval_167721 chr9 72280070 72280408 + 0 NA intron (ENSMUSG00000038535.17, intron 1 of 19) protein_coding-intron (ENSMUSG00000038535.17, intron 1 of 21) -5383 ENSMUSG00000098340.1 ENSMUSG00000098340 ENSMUST00000183670 Gm27253 lincRNA Interval_113008 chr4 46811628 46811898 + 0 NA intron (ENSMUSG00000039809.10, intron 3 of 4) protein_coding-intron (ENSMUSG00000039809.10, intron 4 of 18) 48139 ENSMUSG00000039809.10 ENSMUSG00000039809 ENSMUST00000206773 Gabbr2 protein_coding Interval_145602 chr7 35877353 35877862 + 0 NA Intergenic Intergenic 39347 ENSMUSG00000100387.1 ENSMUSG00000100387 ENSMUST00000187488 Gm28514 lincRNA Interval_5291 chr1 87272658 87272982 + 0 NA intron (ENSMUSG00000026255.15, intron 1 of 4) protein_coding-intron (ENSMUSG00000026255.15, intron 1 of 3) -7646 ENSMUSG00000089821.1 ENSMUSG00000089821 ENSMUST00000138844 Efhd1os antisense Interval_38154 chr12 76004374 76005621 + 0 NA intron (ENSMUSG00000063450.14, intron 62 of 114) protein_coding-intron (ENSMUSG00000063450.14, intron 62 of 115) 95894 ENSMUSG00000092922.1 ENSMUSG00000092922 ENSMUST00000175181 Mir5101 miRNA Interval_9488 chr1 157690399 157690837 + 0 NA Intergenic Intergenic -68482 ENSMUSG00000103962.1 ENSMUSG00000103962 ENSMUST00000193203 Gm38213 processed_pseudogene Interval_64091 chr16 7796698 7798296 + 0 NA Intergenic Intergenic -72605 ENSMUSG00000116450.1 ENSMUSG00000116450 ENSMUST00000230593 Gm49534 lincRNA Interval_174512 chrX 155205178 155205908 + 0 NA Intergenic Intergenic 10906 ENSMUSG00000025283.15 ENSMUSG00000025283 ENSMUST00000123337 Sat1 protein_coding Interval_173283 chrX 76236402 76236957 + 0 NA Intergenic Intergenic 7593 ENSMUSG00000086104.1 ENSMUSG00000086104 ENSMUST00000152793 Gm14707 antisense Interval_66698 chr16 36389049 36389232 + 0 NA intron (ENSMUSG00000079595.2, intron 1 of 1) unprocessed_pseudogene-intron (ENSMUSG00000079595.2, intron 1 of 1) 1982 ENSMUSG00000079595.2 ENSMUSG00000079595 ENSMUST00000114851 Gm7260 unprocessed_pseudogene Interval_106401 chr3 95950454 95951865 + 0 NA Intergenic Intergenic 11073 ENSMUSG00000106262.1 ENSMUSG00000106262 ENSMUST00000196705 Gm43375 TEC Interval_38555 chr12 80111099 80111823 + 0 NA intron (ENSMUSG00000021127.7, intron 1 of 2) protein_coding-intron (ENSMUSG00000021127.7, intron 1 of 1) 1533 ENSMUSG00000021127.7 ENSMUSG00000021127 ENSMUST00000218835 Zfp36l1 protein_coding Interval_104453 chr3 65871147 65872411 + 0 NA intron (ENSMUSG00000103620.1, intron 1 of 3) antisense-intron (ENSMUSG00000103620.1, intron 1 of 3) 502 ENSMUSG00000103620.1 ENSMUSG00000103620 ENSMUST00000195243 Gm37359 antisense Interval_29156 chr11 80792809 80793526 + 0 NA Intergenic Intergenic -13164 ENSMUSG00000035441.14 ENSMUSG00000035441 ENSMUST00000125944 Myo1d protein_coding Interval_101017 chr2 174272847 174274553 + 0 NA Intergenic Intergenic -6115 ENSMUSG00000065410.1 ENSMUSG00000065410 ENSMUST00000083476 Mir298 miRNA Interval_130677 chr5 129660117 129660606 + 0 NA intron (ENSMUSG00000051034.7, intron 2 of 2) protein_coding-intron (ENSMUSG00000051034.7, intron 2 of 2) 9738 ENSMUSG00000051034.7 ENSMUSG00000051034 ENSMUST00000049778 Zfp11 protein_coding Interval_108295 chr3 123385405 123386493 + 0 NA promoter-TSS (ENSMUSG00000028114.16) protein_coding-promoter-TSS (ENSMUSG00000028114.16) 149 ENSMUSG00000028114.16 ENSMUSG00000028114 ENSMUST00000197628 Mettl14 protein_coding Interval_87167 chr19 46563905 46564167 + 0 NA intron (ENSMUSG00000025035.9, intron 1 of 6) protein_coding-intron (ENSMUSG00000025035.9, intron 1 of 5) -5644 ENSMUSG00000025035.9 ENSMUSG00000025035 ENSMUST00000235489 Arl3 protein_coding Interval_108523 chr3 127941966 127943499 + 0 NA intron (ENSMUSG00000104763.1, intron 3 of 4) lincRNA-intron (ENSMUSG00000104763.1, intron 3 of 4) 26560 ENSMUSG00000104763.1 ENSMUSG00000104763 ENSMUST00000198240 9830132P13Rik lincRNA Interval_21600 chr10 130457499 130458062 + 0 NA Intergenic Intergenic -1730 ENSMUSG00000092162.3 ENSMUSG00000092162 ENSMUST00000170257 Vmn2r86 protein_coding Interval_14063 chr10 26382164 26382396 + 0 NA TTS (ENSMUSG00000112045.1) processed_pseudogene-TTS (ENSMUSG00000112045.1) 1814 ENSMUSG00000112045.1 ENSMUSG00000112045 ENSMUST00000217918 Gm5649 processed_pseudogene Interval_16285 chr10 61967239 61967624 + 0 NA intron (ENSMUSG00000058806.15, intron 1 of 40) protein_coding-intron (ENSMUSG00000058806.15, intron 1 of 33) 7807 ENSMUSG00000112574.1 ENSMUSG00000112574 ENSMUST00000218711 Gm5750 processed_pseudogene Interval_5458 chr1 89009268 89009734 + 0 NA Intergenic Intergenic -6612 ENSMUSG00000099378.1 ENSMUSG00000099378 ENSMUST00000186180 1700067G17Rik lincRNA Interval_11798 chr1 185498011 185498326 + 0 NA TTS (ENSMUSG00000102185.1) transcribed_processed_pseudogene-TTS (ENSMUSG00000102185.1) 10874 ENSMUSG00000102185.1 ENSMUSG00000102185 ENSMUST00000192616 5033404E19Rik transcribed_processed_pseudogene Interval_169915 chr9 102933964 102934735 + 0 NA Intergenic Intergenic 35794 ENSMUSG00000032547.12 ENSMUSG00000032547 ENSMUST00000177274 Ryk protein_coding Interval_44418 chr13 44733316 44734217 + 0 NA promoter-TSS (ENSMUSG00000038518.15) protein_coding-promoter-TSS (ENSMUSG00000038518.15) 2396 ENSMUSG00000038518.15 ENSMUSG00000038518 ENSMUST00000173003 Jarid2 protein_coding Interval_44479 chr13 45228896 45229307 + 0 NA Intergenic Intergenic -7310 ENSMUSG00000113772.1 ENSMUSG00000113772 ENSMUST00000222925 Gm47448 lincRNA Interval_130235 chr5 125128568 125129224 + 0 NA intron (ENSMUSG00000029478.16, intron 1 of 47) protein_coding-intron (ENSMUSG00000029478.16, intron 1 of 46) 42055 ENSMUSG00000106663.1 ENSMUSG00000106663 ENSMUST00000198978 Gm42839 antisense Interval_66697 chr16 36336985 36337158 + 0 NA Intergenic Intergenic -2739 ENSMUSG00000079594.2 ENSMUSG00000079594 ENSMUST00000114850 Cstdc6 protein_coding Interval_157833 chr8 74793676 74793940 + 0 NA intron (ENSMUSG00000079011.9, intron 2 of 2) lincRNA-intron (ENSMUSG00000079011.9, intron 4 of 9) 40129 ENSMUSG00000079011.9 ENSMUSG00000079011 ENSMUST00000137218 Gm11033 lincRNA Interval_4943 chr1 82852220 82852501 + 0 NA intron (ENSMUSG00000026159.13, intron 1 of 5) protein_coding-intron (ENSMUSG00000026159.13, intron 1 of 12) 12691 ENSMUSG00000026159.13 ENSMUSG00000026159 ENSMUST00000186043 Agfg1 protein_coding Interval_23575 chr11 23481194 23481385 + 0 NA intron (ENSMUSG00000056342.16, intron 75 of 79) protein_coding-intron (ENSMUSG00000056342.16, intron 3 of 6) -1622 ENSMUSG00000065591.1 ENSMUSG00000065591 ENSMUST00000083657 Gm22753 snRNA Interval_150706 chr7 113622027 113622407 + 0 NA Intergenic Intergenic 29355 ENSMUSG00000109968.1 ENSMUSG00000109968 ENSMUST00000211320 Gm45612 processed_pseudogene Interval_27504 chr11 68277109 68277908 + 0 NA exon (ENSMUSG00000020902.12, exon 3 of 7) protein_coding-exon (ENSMUSG00000020902.12, exon 3 of 7) -6629 ENSMUSG00000084993.1 ENSMUSG00000084993 ENSMUST00000151817 Gm12305 sense_intronic Interval_31127 chr11 98323951 98324215 + 0 NA Intergenic Intergenic 5565 ENSMUSG00000038255.6 ENSMUSG00000038255 ENSMUST00000041685 Neurod2 protein_coding Interval_67267 chr16 45111257 45111520 + 0 NA intron (ENSMUSG00000022665.15, intron 4 of 8) protein_coding-intron (ENSMUSG00000022665.15, intron 3 of 7) 17798 ENSMUSG00000022665.15 ENSMUSG00000022665 ENSMUST00000061050 Ccdc80 protein_coding Interval_110478 chr3 159306480 159306807 + 0 NA exon (ENSMUSG00000106053.1, exon 5 of 5) lincRNA-exon (ENSMUSG00000106053.1, exon 5 of 5) -184775 ENSMUSG00000104864.1 ENSMUSG00000104864 ENSMUST00000197367 Gm43655 processed_pseudogene Interval_169711 chr9 100569835 100571471 + 0 NA intron (ENSMUSG00000070287.3, intron 1 of 1) protein_coding-intron (ENSMUSG00000070287.3, intron 1 of 1) -17738 ENSMUSG00000070287.3 ENSMUSG00000070287 ENSMUST00000189478 Slc35g2 protein_coding Interval_173734 chrX 103274118 103274527 + 0 NA intron (ENSMUSG00000031325.15, intron 1 of 3) transcribed_unitary_pseudogene-intron (ENSMUSG00000031325.15, intron 1 of 3) 13756 ENSMUSG00000031325.15 ENSMUSG00000031325 ENSMUST00000183315 4930519F16Rik transcribed_unitary_pseudogene Interval_83759 chr19 4432058 4432388 + 0 NA intron (ENSMUSG00000041845.11, intron 2 of 4) protein_coding-intron (ENSMUSG00000041845.11, intron 2 of 4) -7100 ENSMUSG00000087132.8 ENSMUSG00000087132 ENSMUST00000136632 A930001C03Rik processed_transcript Interval_49394 chr13 111660093 111660287 + 0 NA Intergenic Intergenic -26143 ENSMUSG00000032727.14 ENSMUSG00000032727 ENSMUST00000232398 Mier3 protein_coding Interval_112312 chr4 40284500 40285867 + 0 NA Intergenic Intergenic -5774 ENSMUSG00000071014.10 ENSMUSG00000071014 ENSMUST00000108108 Ndufb6 protein_coding Interval_133583 chr6 7120188 7120629 + 0 NA Intergenic Intergenic 73764 ENSMUSG00000098421.1 ENSMUSG00000098421 ENSMUST00000184890 Gm27190 processed_pseudogene Interval_72795 chr17 32221032 32221519 + 0 NA exon (ENSMUSG00000024002.18, exon 7 of 20) protein_coding-exon (ENSMUSG00000024002.18, exon 7 of 20) -20888 ENSMUSG00000116414.2 ENSMUSG00000116414 ENSMUST00000230961 Gm4432 processed_pseudogene Interval_29744 chr11 86520303 86520885 + 0 NA promoter-TSS (ENSMUSG00000020516.15) protein_coding-promoter-TSS (ENSMUSG00000020516.15) 24211 ENSMUSG00000020516.15 ENSMUSG00000020516 ENSMUST00000138810 Rps6kb1 protein_coding Interval_88808 chr2 11331279 11332267 + 0 NA Intergenic Intergenic -1052 ENSMUSG00000102894.1 ENSMUSG00000102894 ENSMUST00000193871 Gm37851 TEC Interval_71463 chr17 23932191 23932410 + 0 NA Intergenic Intergenic -6803 ENSMUSG00000117488.1 ENSMUSG00000117488 ENSMUST00000234950 Gm41545 lincRNA Interval_46383 chr13 64364229 64364476 + 0 NA TTS (ENSMUSG00000021477.9) protein_coding-TTS (ENSMUSG00000021477.9) -2615 ENSMUSG00000114072.1 ENSMUSG00000114072 ENSMUST00000221966 Gm49230 processed_pseudogene Interval_152467 chr7 133161973 133162329 + 0 NA Intergenic Intergenic 33900 ENSMUSG00000109816.1 ENSMUSG00000109816 ENSMUST00000209850 4930483O08Rik lincRNA Interval_50230 chr14 10712897 10713534 + 0 NA intron (ENSMUSG00000060579.13, intron 3 of 4) protein_coding-intron (ENSMUSG00000060579.13, intron 4 of 9) -25320 ENSMUSG00000089833.2 ENSMUSG00000089833 ENSMUST00000160149 Fhitos antisense Interval_36193 chr12 38741229 38741877 + 0 NA TTS (ENSMUSG00000113520.1) processed_pseudogene-TTS (ENSMUSG00000113520.1) 657 ENSMUSG00000113520.1 ENSMUSG00000113520 ENSMUST00000222877 Gm4257 processed_pseudogene Interval_28006 chr11 72142606 72143744 + 0 NA Intergenic Intergenic -7397 ENSMUSG00000040543.16 ENSMUSG00000040543 ENSMUST00000142471 Pitpnm3 protein_coding Interval_68887 chr16 87823202 87823406 + 0 NA intron (ENSMUSG00000055972.5, intron 1 of 5) lincRNA-intron (ENSMUSG00000055972.5, intron 1 of 5) 35732 ENSMUSG00000055972.5 ENSMUSG00000055972 ENSMUST00000189929 2810407A14Rik lincRNA Interval_157548 chr8 71366757 71367772 + 0 NA promoter-TSS (ENSMUSG00000002395.14) protein_coding-promoter-TSS (ENSMUSG00000002395.14) 47 ENSMUSG00000002395.14 ENSMUSG00000002395 ENSMUST00000137137 Use1 protein_coding Interval_139467 chr6 100357044 100357324 + 0 NA Intergenic Intergenic -70436 ENSMUSG00000072872.3 ENSMUSG00000072872 ENSMUST00000205164 Rybp protein_coding Interval_131973 chr5 141613008 141613418 + 0 NA exon (ENSMUSG00000039683.16, exon 4 of 45) protein_coding-exon (ENSMUSG00000039683.16, exon 4 of 45) 2789 ENSMUSG00000085540.1 ENSMUSG00000085540 ENSMUST00000150385 Gm16036 antisense Interval_67019 chr16 40656873 40657402 + 0 NA exon (ENSMUSG00000061080.11, exon 3 of 3) protein_coding-exon (ENSMUSG00000061080.11, exon 3 of 3) -289200 ENSMUSG00000098472.1 ENSMUSG00000098472 ENSMUST00000184367 Gm27887 miRNA Interval_93580 chr2 74647300 74648958 + 0 NA Intergenic Intergenic 11290 ENSMUSG00000001815.15 ENSMUSG00000001815 ENSMUST00000173623 Evx2 protein_coding Interval_40284 chr12 103144017 103144892 + 0 NA intron (ENSMUSG00000021198.16, intron 41 of 51) protein_coding-intron (ENSMUSG00000021198.16, intron 36 of 46) 16265 ENSMUSG00000098628.1 ENSMUSG00000098628 ENSMUST00000183635 Gm27976 misc_RNA Interval_102723 chr3 30595104 30596113 + 0 NA exon (ENSMUSG00000065361.1, exon 1 of 1) misc_RNA-exon (ENSMUSG00000065361.1, exon 1 of 1) 125 ENSMUSG00000102505.1 ENSMUSG00000102505 ENSMUST00000193960 1600017P15Rik TEC Interval_68213 chr16 68539474 68539728 + 0 NA Intergenic Intergenic 28666 ENSMUSG00000116859.1 ENSMUSG00000116859 ENSMUST00000231403 Gm49651 processed_pseudogene Interval_118925 chr4 134491127 134491524 + 0 NA Intergenic Intergenic -1897 ENSMUSG00000083001.1 ENSMUSG00000083001 ENSMUST00000117209 Gm13250 processed_pseudogene Interval_77321 chr17 87998849 87999361 + 0 NA intron (ENSMUSG00000005371.15, intron 3 of 11) protein_coding-intron (ENSMUSG00000005371.15, intron 14 of 22) 24010 ENSMUSG00000005370.4 ENSMUSG00000005370 ENSMUST00000234756 Msh6 protein_coding Interval_163639 chr9 22927960 22928203 + 0 NA Intergenic Intergenic -155246 ENSMUSG00000098940.1 ENSMUSG00000098940 ENSMUST00000184937 Gm27639 snRNA Interval_115104 chr4 89875403 89876911 + 0 NA Intergenic Intergenic 196721 ENSMUSG00000043753.2 ENSMUSG00000043753 ENSMUST00000052478 Dmrta1 protein_coding Interval_146028 chr7 43291482 43292042 + 0 NA Intergenic Intergenic 21532 ENSMUSG00000012640.16 ENSMUSG00000012640 ENSMUST00000135130 Zfp715 protein_coding Interval_29064 chr11 80116110 80116724 + 0 NA intron (ENSMUSG00000017550.14, intron 10 of 18) protein_coding-intron (ENSMUSG00000017550.14, intron 14 of 22) 13414 ENSMUSG00000017550.14 ENSMUSG00000017550 ENSMUST00000154168 Atad5 protein_coding Interval_132062 chr5 142557139 142558087 + 0 NA TTS (ENSMUSG00000105213.1) unprocessed_pseudogene-TTS (ENSMUSG00000105213.1) 1169 ENSMUSG00000105213.1 ENSMUSG00000105213 ENSMUST00000196808 Gm43037 unprocessed_pseudogene Interval_51037 chr14 21722573 21722775 + 0 NA Intergenic Intergenic -18869 ENSMUSG00000084940.2 ENSMUSG00000084940 ENSMUST00000141656 Gm15935 antisense Interval_151919 chr7 127542373 127542640 + 0 NA exon (ENSMUSG00000053877.12, exon 21 of 30) protein_coding-exon (ENSMUSG00000053877.12, exon 21 of 30) 14632 ENSMUSG00000065259.1 ENSMUSG00000065259 ENSMUST00000083325 Snora30 snoRNA Interval_127867 chr5 108387793 108388933 + 0 NA promoter-TSS (ENSMUSG00000029491.7) protein_coding-promoter-TSS (ENSMUSG00000029491.7) -63 ENSMUSG00000029491.7 ENSMUSG00000029491 ENSMUST00000130448 Pde6b protein_coding Interval_60145 chr15 66391849 66392762 + 0 NA intron (ENSMUSG00000022375.6, intron 11 of 11) protein_coding-intron (ENSMUSG00000022375.6, intron 11 of 11) -33821 ENSMUSG00000115351.1 ENSMUSG00000115351 ENSMUST00000227329 Gm19077 processed_pseudogene Interval_174508 chrX 153972630 153972837 + 0 NA Intergenic Intergenic 38531 ENSMUSG00000094802.7 ENSMUSG00000094802 ENSMUST00000178342 Samt1 protein_coding Interval_124689 chr5 53302726 53303179 + 0 NA Intergenic Intergenic 21142 ENSMUSG00000106981.1 ENSMUSG00000106981 ENSMUST00000200940 Gm45495 lincRNA Interval_56723 chr14 121658452 121659116 + 0 NA exon (ENSMUSG00000025558.19, exon 6 of 54) protein_coding-exon (ENSMUSG00000025558.19, exon 6 of 54) 80077 ENSMUSG00000025558.19 ENSMUSG00000025558 ENSMUST00000238406 Dock9 protein_coding Interval_74006 chr17 45987442 45987966 + 0 NA Intergenic Intergenic 25845 ENSMUSG00000117040.1 ENSMUSG00000117040 ENSMUST00000233512 Gm49805 lincRNA Interval_11560 chr1 182700989 182702399 + 0 NA Intergenic Intergenic 13964 ENSMUSG00000102688.1 ENSMUSG00000102688 ENSMUST00000192917 Gm37218 lincRNA Interval_154550 chr8 19304661 19304893 + 0 NA TTS (ENSMUSG00000081154.2) transcribed_processed_pseudogene-TTS (ENSMUSG00000081154.2) 4100 ENSMUSG00000081154.2 ENSMUSG00000081154 ENSMUST00000212360 Defa-ps13 transcribed_processed_pseudogene Interval_11241 chr1 180391279 180391523 + 0 NA intron (ENSMUSG00000038855.10, intron 2 of 7) protein_coding-intron (ENSMUSG00000038855.10, intron 2 of 7) 14957 ENSMUSG00000103772.1 ENSMUSG00000103772 ENSMUST00000194945 Gm36933 TEC Interval_97450 chr2 136686509 136686981 + 0 NA Intergenic Intergenic 6784 ENSMUSG00000103066.1 ENSMUSG00000103066 ENSMUST00000193814 Gm36967 TEC Interval_91227 chr2 36089207 36091955 + 0 NA intron (ENSMUSG00000026890.19, intron 8 of 9) protein_coding-intron (ENSMUSG00000026890.19, intron 8 of 9) -3083 ENSMUSG00000098312.1 ENSMUSG00000098312 ENSMUST00000185171 Gm27953 misc_RNA Interval_119750 chr4 139668762 139670670 + 0 NA exon (ENSMUSG00000028738.14, exon 6 of 6) protein_coding-exon (ENSMUSG00000028738.14, exon 6 of 6) 16167 ENSMUSG00000028738.14 ENSMUSG00000028738 ENSMUST00000166773 Tas1r2 protein_coding Interval_33926 chr11 119458864 119459144 + 0 NA intron (ENSMUSG00000070327.14, intron 40 of 66) protein_coding-intron (ENSMUSG00000070327.14, intron 40 of 66) -19053 ENSMUSG00000070327.14 ENSMUSG00000070327 ENSMUST00000172235 Rnf213 protein_coding Interval_162131 chr8 125397765 125398507 + 0 NA Intergenic Intergenic -170813 ENSMUSG00000086694.1 ENSMUSG00000086694 ENSMUST00000156666 Gm16237 antisense Interval_5596 chr1 90063396 90063643 + 0 NA intron (ENSMUSG00000026301.16, intron 1 of 1) protein_coding-intron (ENSMUSG00000026301.16, intron 15 of 18) -8559 ENSMUSG00000026301.16 ENSMUSG00000026301 ENSMUST00000186522 Iqca protein_coding Interval_128254 chr5 112077369 112078306 + 0 NA Intergenic Intergenic -78400 ENSMUSG00000104538.1 ENSMUSG00000104538 ENSMUST00000197688 1700016B01Rik lincRNA Interval_150996 chr7 117492751 117492979 + 0 NA intron (ENSMUSG00000030657.11, intron 1 of 1) protein_coding-intron (ENSMUSG00000030657.11, intron 2 of 11) 17373 ENSMUSG00000030657.11 ENSMUSG00000030657 ENSMUST00000161889 Xylt1 protein_coding Interval_69531 chr16 94065556 94066676 + 0 NA Intergenic Intergenic 17750 ENSMUSG00000116569.1 ENSMUSG00000116569 ENSMUST00000231710 Gm49620 bidirectional_promoter_lncRNA Interval_131062 chr5 134865239 134865496 + 0 NA Intergenic Intergenic 41366 ENSMUSG00000040576.8 ENSMUSG00000040576 ENSMUST00000047305 Tmem270 protein_coding Interval_107338 chr3 105970286 105972941 + 0 NA intron (ENSMUSG00000105852.4, intron 10 of 17) processed_transcript-intron (ENSMUSG00000105852.4, intron 2 of 3) -5678 ENSMUSG00000074340.9 ENSMUSG00000074340 ENSMUST00000092878 Ovgp1 protein_coding Interval_18520 chr10 86863447 86863971 + 0 NA intron (ENSMUSG00000035459.18, intron 14 of 27) protein_coding-intron (ENSMUSG00000035459.18, intron 54 of 68) 22040 ENSMUSG00000035459.18 ENSMUSG00000035459 ENSMUST00000218366 Stab2 protein_coding Interval_171791 chr9 121198923 121199134 + 0 NA intron (ENSMUSG00000040936.15, intron 19 of 36) protein_coding-intron (ENSMUSG00000040936.15, intron 19 of 33) -43314 ENSMUSG00000084706.1 ENSMUSG00000084706 ENSMUST00000122757 Gm22987 misc_RNA Interval_127883 chr5 108565645 108567059 + 0 NA Intergenic Intergenic -12998 ENSMUSG00000105590.1 ENSMUSG00000105590 ENSMUST00000196046 Gm43364 TEC Interval_136674 chr6 57512297 57512519 + 0 NA intron (ENSMUSG00000037826.5, intron 6 of 6) protein_coding-intron (ENSMUSG00000037826.5, intron 6 of 6) 3199 ENSMUSG00000037826.5 ENSMUSG00000037826 ENSMUST00000203713 Ppm1k protein_coding Interval_160238 chr8 107386668 107388174 + 0 NA TTS (ENSMUSG00000003849.8) protein_coding-TTS (ENSMUSG00000003849.8) 15785 ENSMUSG00000003849.8 ENSMUSG00000003849 ENSMUST00000003947 Nqo1 protein_coding Interval_53987 chr14 64118697 64119185 + 0 NA intron (ENSMUSG00000114284.1, intron 1 of 3) antisense-intron (ENSMUSG00000114284.1, intron 1 of 3) 2627 ENSMUSG00000114284.1 ENSMUSG00000114284 ENSMUST00000225122 9630015K15Rik antisense Interval_5233 chr1 86614422 86614652 + 0 NA Intergenic Intergenic 23071 ENSMUSG00000084468.1 ENSMUSG00000084468 ENSMUST00000122519 Gm22955 miRNA Interval_8 GL456210.1 97939 98166 + 0 NA NA NA NA NA Interval_61126 chr15 79396654 79397270 + 0 NA promoter-TSS (ENSMUSG00000009035.15) protein_coding-promoter-TSS (ENSMUSG00000009035.15) 6277 ENSMUSG00000009035.15 ENSMUSG00000009035 ENSMUST00000229049 Tmem184b protein_coding Interval_7942 chr1 134682317 134682843 + 0 NA intron (ENSMUSG00000026452.15, intron 2 of 9) protein_coding-intron (ENSMUSG00000026452.15, intron 1 of 2) 35899 ENSMUSG00000026452.15 ENSMUSG00000026452 ENSMUST00000187702 Syt2 protein_coding Interval_8008 chr1 135185574 135187245 + 0 NA Intergenic Intergenic -18728 ENSMUSG00000026424.8 ENSMUSG00000026424 ENSMUST00000027682 Gpr37l1 protein_coding Interval_147461 chr7 67473385 67473698 + 0 NA Intergenic Intergenic -29608 ENSMUSG00000109329.1 ENSMUSG00000109329 ENSMUST00000208755 Gm33926 lincRNA Interval_148684 chr7 84124492 84124754 + 0 NA intron (ENSMUSG00000038459.10, intron 1 of 2) protein_coding-intron (ENSMUSG00000038459.10, intron 1 of 2) 27047 ENSMUSG00000038459.10 ENSMUSG00000038459 ENSMUST00000208271 Abhd17c protein_coding Interval_35361 chr12 21030483 21031306 + 0 NA intron (ENSMUSG00000116627.1, intron 3 of 3) protein_coding-intron (ENSMUSG00000052632.16, intron 1 of 9) -12065 ENSMUSG00000092229.3 ENSMUSG00000092229 ENSMUST00000174304 Gm5977 transcribed_unprocessed_pseudogene Interval_22223 chr11 7275848 7276157 + 0 NA intron (ENSMUSG00000087637.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000087637.1, intron 1 of 1) 14372 ENSMUSG00000087637.1 ENSMUSG00000087637 ENSMUST00000149481 Gm11986 lincRNA Interval_27940 chr11 71032457 71033694 + 0 NA exon (ENSMUSG00000018451.7, exon 1 of 2) protein_coding-exon (ENSMUSG00000018451.7, exon 1 of 2) 438 ENSMUSG00000018451.7 ENSMUSG00000018451 ENSMUST00000156068 6330403K07Rik protein_coding Interval_138100 chr6 85186041 85186324 + 0 NA Intergenic Intergenic -7337 ENSMUSG00000033726.8 ENSMUSG00000033726 ENSMUST00000173919 Emx1 protein_coding Interval_124659 chr5 52910308 52912026 + 0 NA Intergenic Intergenic 8042 ENSMUSG00000105054.1 ENSMUSG00000105054 ENSMUST00000196038 Gm43664 processed_pseudogene Interval_72152 chr17 28298673 28299307 + 0 NA TTS (ENSMUSG00000002250.16) protein_coding-TTS (ENSMUSG00000002250.16) -14587 ENSMUSG00000007570.16 ENSMUSG00000007570 ENSMUST00000156569 Fance protein_coding Interval_26726 chr11 60032197 60032751 + 0 NA intron (ENSMUSG00000000301.16, intron 1 of 6) protein_coding-intron (ENSMUSG00000000301.16, intron 1 of 6) -60964 ENSMUSG00000000301.16 ENSMUSG00000000301 ENSMUST00000133028 Pemt protein_coding Interval_85327 chr19 24757193 24757629 + 0 NA intron (ENSMUSG00000041731.13, intron 6 of 10) protein_coding-intron (ENSMUSG00000041731.13, intron 6 of 10) -64041 ENSMUSG00000097950.1 ENSMUSG00000097950 ENSMUST00000182466 Gm17800 processed_pseudogene Interval_152352 chr7 132226456 132227831 + 0 NA intron (ENSMUSG00000030849.18, intron 2 of 6) protein_coding-intron (ENSMUSG00000030849.18, intron 2 of 6) 72972 ENSMUSG00000086814.1 ENSMUSG00000086814 ENSMUST00000152302 Gm15677 antisense Interval_168879 chr9 88308815 88309175 + 0 NA Intergenic Intergenic 22271 ENSMUSG00000111795.1 ENSMUSG00000111795 ENSMUST00000215074 Gm47620 processed_pseudogene Interval_96458 chr2 123802211 123802398 + 0 NA Intergenic Intergenic 327652 ENSMUSG00000085496.1 ENSMUSG00000085496 ENSMUST00000129584 4930517E11Rik lincRNA Interval_84268 chr19 9120739 9121046 + 0 NA intron (ENSMUSG00000024654.8, intron 2 of 6) protein_coding-intron (ENSMUSG00000024654.8, intron 2 of 6) -14265 ENSMUSG00000024658.7 ENSMUSG00000024658 ENSMUST00000142025 Gm9750 antisense Interval_34760 chr12 10409650 10410059 + 0 NA Intergenic Intergenic 19082 ENSMUSG00000020621.6 ENSMUSG00000020621 ENSMUST00000020947 Rdh14 protein_coding Interval_10674 chr1 172611291 172611472 + 0 NA Intergenic Intergenic -8834 ENSMUSG00000070504.9 ENSMUSG00000070504 ENSMUST00000193431 Fcrl6 protein_coding Interval_76805 chr17 84185756 84189006 + 0 NA intron (ENSMUSG00000045817.8, intron 1 of 1) protein_coding-intron (ENSMUSG00000045817.8, intron 1 of 1) 566 ENSMUSG00000045817.8 ENSMUSG00000045817 ENSMUST00000060366 Zfp36l2 protein_coding Interval_163523 chr9 21852098 21853236 + 0 NA promoter-TSS (ENSMUSG00000032198.9) protein_coding-promoter-TSS (ENSMUSG00000032198.9) -49 ENSMUSG00000032198.9 ENSMUSG00000032198 ENSMUST00000213775 Dock6 protein_coding Interval_56788 chr14 122095473 122096275 + 0 NA Intergenic Intergenic -4648 ENSMUSG00000115121.1 ENSMUSG00000115121 ENSMUST00000226723 Gm49236 lincRNA Interval_61241 chr15 80171386 80174392 + 0 NA promoter-TSS (ENSMUSG00000042428.6) protein_coding-promoter-TSS (ENSMUSG00000042428.6) -832 ENSMUSG00000042428.6 ENSMUSG00000042428 ENSMUST00000044970 Mgat3 protein_coding Interval_141674 chr6 133129475 133129840 + 0 NA Intergenic Intergenic -15384 ENSMUSG00000108115.1 ENSMUSG00000108115 ENSMUST00000205138 Gm7039 processed_pseudogene Interval_6835 chr1 119965388 119966189 + 0 NA intron (ENSMUSG00000036962.12, intron 6 of 6) protein_coding-intron (ENSMUSG00000036962.12, intron 5 of 22) -21007 ENSMUSG00000092245.1 ENSMUSG00000092245 ENSMUST00000174509 Gm17973 processed_pseudogene Interval_165967 chr9 55046940 55047302 + 0 NA intron (ENSMUSG00000035200.7, intron 1 of 5) protein_coding-intron (ENSMUSG00000035200.7, intron 1 of 5) 1658 ENSMUSG00000035200.7 ENSMUSG00000035200 ENSMUST00000034854 Chrnb4 protein_coding Interval_78350 chr18 12101850 12102544 + 0 NA intron (ENSMUSG00000049411.15, intron 3 of 3) protein_coding-intron (ENSMUSG00000049411.15, intron 3 of 12) 19283 ENSMUSG00000049411.15 ENSMUSG00000049411 ENSMUST00000234833 Tmem241 protein_coding Interval_65204 chr16 20508572 20509874 + 0 NA TTS (ENSMUSG00000003235.13) protein_coding-TTS (ENSMUSG00000003235.13) 4460 ENSMUSG00000003235.13 ENSMUSG00000003235 ENSMUST00000148714 Eif2b5 protein_coding Interval_49610 chr13 113523383 113524357 + 0 NA Intergenic Intergenic -21026 ENSMUSG00000114790.1 ENSMUSG00000114790 ENSMUST00000223835 4921509O07Rik lincRNA Interval_81079 chr18 53690672 53691757 + 0 NA intron (ENSMUSG00000048799.8, intron 19 of 19) protein_coding-intron (ENSMUSG00000048799.8, intron 19 of 20) 52108 ENSMUSG00000118362.1 ENSMUSG00000118362 ENSMUST00000235670 Gm19466 lincRNA Interval_2543 chr1 40085279 40086171 + 0 NA promoter-TSS (ENSMUSG00000026073.13) protein_coding-promoter-TSS (ENSMUSG00000026073.13) 126 ENSMUSG00000097899.2 ENSMUSG00000097899 ENSMUST00000181756 Gm16894 antisense Interval_114441 chr4 77083157 77083422 + 0 NA intron (ENSMUSG00000028399.18, intron 7 of 9) protein_coding-intron (ENSMUSG00000028399.18, intron 7 of 14) -124791 ENSMUSG00000092829.1 ENSMUSG00000092829 ENSMUST00000175088 Gm23159 miRNA Interval_107324 chr3 105847487 105847705 + 0 NA Intergenic Intergenic -23311 ENSMUSG00000074344.7 ENSMUSG00000074344 ENSMUST00000199977 Tmigd3 protein_coding Interval_112477 chr4 41487423 41488139 + 0 NA Intergenic Intergenic 14887 ENSMUSG00000046312.4 ENSMUSG00000046312 ENSMUST00000149596 Myorg protein_coding Interval_19879 chr10 110847117 110847319 + 0 NA intron (ENSMUSG00000101801.6, intron 2 of 2) antisense-intron (ENSMUSG00000101801.6, intron 2 of 2) 45201 ENSMUSG00000088447.1 ENSMUSG00000088447 ENSMUST00000157822 Gm22186 snoRNA Interval_158534 chr8 84306745 84307617 + 0 NA Intergenic Intergenic -3448 ENSMUSG00000109653.1 ENSMUSG00000109653 ENSMUST00000210948 Gm45608 processed_pseudogene Interval_13928 chr10 24753874 24754962 + 0 NA Intergenic Intergenic -42421 ENSMUSG00000037370.13 ENSMUSG00000037370 ENSMUST00000142974 Enpp1 protein_coding Interval_122345 chr5 21574575 21575738 + 0 NA exon (ENSMUSG00000039883.5, exon 4 of 4) protein_coding-exon (ENSMUSG00000039883.5, exon 4 of 4) -23584 ENSMUSG00000106135.1 ENSMUSG00000106135 ENSMUST00000197353 Gm6543 processed_pseudogene Interval_167323 chr9 67361783 67362769 + 0 NA intron (ENSMUSG00000052698.15, intron 15 of 58) protein_coding-intron (ENSMUSG00000052698.15, intron 14 of 57) -31629 ENSMUSG00000052698.15 ENSMUSG00000052698 ENSMUST00000213584 Tln2 protein_coding Interval_164621 chr9 40139445 40139814 + 0 NA Intergenic Intergenic -8516 ENSMUSG00000040541.8 ENSMUSG00000040541 ENSMUST00000238613 Tmem225 protein_coding Interval_40073 chr12 101007279 101009161 + 0 NA intron (ENSMUSG00000113634.1, intron 1 of 1) protein_coding-intron (ENSMUSG00000021182.16, intron 3 of 29) 1233 ENSMUSG00000113634.1 ENSMUSG00000113634 ENSMUST00000223241 Gm36756 antisense Interval_161235 chr8 118968706 118969357 + 0 NA TTS (ENSMUSG00000031841.19) protein_coding-TTS (ENSMUSG00000031841.19) -182434 ENSMUSG00000031841.19 ENSMUSG00000031841 ENSMUST00000151842 Cdh13 protein_coding Interval_91550 chr2 42981450 42981704 + 0 NA Intergenic Intergenic 172542 ENSMUSG00000105844.1 ENSMUSG00000105844 ENSMUST00000198309 Gm24350 snoRNA Interval_30193 chr11 90389672 90392283 + 0 NA promoter-TSS (ENSMUSG00000003949.16) protein_coding-promoter-TSS (ENSMUSG00000003949.16) -3004 ENSMUSG00000003949.16 ENSMUSG00000003949 ENSMUST00000145786 Hlf protein_coding Interval_8277 chr1 136901451 136901928 + 0 NA intron (ENSMUSG00000026398.14, intron 6 of 8) protein_coding-intron (ENSMUSG00000026398.14, intron 6 of 8) 47484 ENSMUSG00000026398.14 ENSMUSG00000026398 ENSMUST00000195428 Nr5a2 protein_coding Interval_30633 chr11 95580779 95581138 + 0 NA exon (ENSMUSG00000000120.6, exon 2 of 6) protein_coding-exon (ENSMUSG00000000120.6, exon 2 of 6) 6777 ENSMUSG00000000120.6 ENSMUSG00000000120 ENSMUST00000000122 Ngfr protein_coding Interval_171086 chr9 114468516 114468989 + 0 NA intron (ENSMUSG00000045594.10, intron 14 of 14) protein_coding-intron (ENSMUSG00000045594.10, intron 15 of 15) 36164 ENSMUSG00000047898.7 ENSMUSG00000047898 ENSMUST00000215959 Ccr4 protein_coding Interval_33987 chr11 119852939 119853575 + 0 NA intron (ENSMUSG00000025583.15, intron 16 of 32) protein_coding-intron (ENSMUSG00000025583.15, intron 17 of 33) -3052 ENSMUSG00000025583.15 ENSMUSG00000025583 ENSMUST00000131217 Rptor protein_coding Interval_50634 chr14 16929809 16930009 + 0 NA Intergenic Intergenic -16750 ENSMUSG00000114890.1 ENSMUSG00000114890 ENSMUST00000223705 Tpi-rs9 processed_pseudogene Interval_45990 chr13 59839149 59839684 + 0 NA Intergenic Intergenic 16150 ENSMUSG00000114354.1 ENSMUSG00000114354 ENSMUST00000224737 Gm34961 lincRNA Interval_24748 chr11 36604850 36605374 + 0 NA intron (ENSMUSG00000049336.16, intron 2 of 28) protein_coding-intron (ENSMUSG00000049336.16, intron 2 of 28) -117770 ENSMUSG00000065173.1 ENSMUSG00000065173 ENSMUST00000083239 Gm22127 snRNA Interval_65619 chr16 24236361 24237237 + 0 NA intron (ENSMUSG00000115869.1, intron 1 of 3) transcribed_processed_pseudogene-intron (ENSMUSG00000115852.2, intron 2 of 3) -20290 ENSMUSG00000115869.1 ENSMUSG00000115869 ENSMUST00000230869 Gm31814 sense_intronic Interval_50275 chr14 11580178 11581066 + 0 NA intron (ENSMUSG00000021745.14, intron 1 of 3) protein_coding-intron (ENSMUSG00000021745.14, intron 1 of 29) -59852 ENSMUSG00000114849.1 ENSMUSG00000114849 ENSMUST00000224543 Gm48595 lincRNA Interval_142746 chr6 145302509 145304030 + 0 NA exon (ENSMUSG00000087277.1, exon 1 of 2) lincRNA-exon (ENSMUSG00000087277.1, exon 1 of 2) 117 ENSMUSG00000087277.1 ENSMUSG00000087277 ENSMUST00000126922 2010013B24Rik lincRNA Interval_103970 chr3 55721642 55722088 + 0 NA intron (ENSMUSG00000027799.12, intron 4 of 18) protein_coding-intron (ENSMUSG00000027799.12, intron 43 of 57) -60645 ENSMUSG00000056947.5 ENSMUSG00000056947 ENSMUST00000075422 Mab21l1 protein_coding Interval_33133 chr11 114657169 114658144 + 0 NA Intergenic Intergenic -6952 ENSMUSG00000083769.1 ENSMUSG00000083769 ENSMUST00000120766 Gm11689 processed_pseudogene Interval_100205 chr2 167624944 167626076 + 0 NA intron (ENSMUSG00000089739.2, intron 5 of 7) protein_coding-intron (ENSMUSG00000078923.10, intron 1 of 2) 6477 ENSMUSG00000078923.10 ENSMUSG00000078923 ENSMUST00000144830 Ube2v1 protein_coding Interval_173989 chrX 122984673 122985264 + 0 NA Intergenic Intergenic 44707 ENSMUSG00000094864.2 ENSMUSG00000094864 ENSMUST00000165345 Gm17521 lincRNA Interval_63079 chr15 98989967 98994136 + 0 NA exon (ENSMUSG00000097587.2, exon 4 of 4) processed_transcript-exon (ENSMUSG00000097587.2, exon 4 of 4) 8703 ENSMUSG00000097587.2 ENSMUSG00000097587 ENSMUST00000180490 4930578M01Rik processed_transcript Interval_154849 chr8 24358718 24359917 + 0 NA intron (ENSMUSG00000109299.1, intron 1 of 4) lincRNA-intron (ENSMUSG00000109299.1, intron 1 of 4) 119 ENSMUSG00000109299.1 ENSMUSG00000109299 ENSMUST00000207438 Gm45164 lincRNA Interval_132804 chr5 147973825 147974617 + 0 NA intron (ENSMUSG00000029651.16, intron 1 of 14) protein_coding-intron (ENSMUSG00000029651.16, intron 1 of 14) -17055 ENSMUSG00000085565.1 ENSMUSG00000085565 ENSMUST00000138406 Gm15721 lincRNA Interval_93188 chr2 70989631 70990295 + 0 NA intron (ENSMUSG00000041975.17, intron 3 of 10) protein_coding-intron (ENSMUSG00000041975.17, intron 3 of 5) -7779 ENSMUSG00000041975.17 ENSMUSG00000041975 ENSMUST00000124273 Mettl8 protein_coding Interval_136664 chr6 57343188 57343665 + 0 NA Intergenic Intergenic -13932 ENSMUSG00000115792.1 ENSMUSG00000115792 ENSMUST00000227168 Vmn1r16 protein_coding Interval_125670 chr5 73168118 73168714 + 0 NA promoter-TSS (ENSMUSG00000070733.13) protein_coding-promoter-TSS (ENSMUSG00000070733.13) 11402 ENSMUSG00000086376.2 ENSMUSG00000086376 ENSMUST00000146728 1700071G01Rik antisense Interval_131021 chr5 134597165 134598234 + 0 NA intron (ENSMUSG00000023104.9, intron 3 of 3) protein_coding-intron (ENSMUSG00000023104.9, intron 10 of 10) 6221 ENSMUSG00000040751.12 ENSMUSG00000040751 ENSMUST00000201832 Lat2 protein_coding Interval_66325 chr16 33160597 33160812 + 0 NA Intergenic Intergenic -20456 ENSMUSG00000089109.1 ENSMUSG00000089109 ENSMUST00000158484 Gm23916 ribozyme Interval_19154 chr10 95190270 95191215 + 0 NA intron (ENSMUSG00000045867.10, intron 1 of 1) protein_coding-intron (ENSMUSG00000045867.10, intron 2 of 2) 30381 ENSMUSG00000112682.1 ENSMUSG00000112682 ENSMUST00000220149 Gm48874 TEC Interval_62867 chr15 97544778 97545347 + 0 NA Intergenic Intergenic 13228 ENSMUSG00000116131.1 ENSMUSG00000116131 ENSMUST00000230522 Gm49506 processed_pseudogene Interval_16974 chr10 70228397 70229228 + 0 NA Intergenic Intergenic 24102 ENSMUSG00000019933.7 ENSMUSG00000019933 ENSMUST00000189468 Mrln protein_coding Interval_37813 chr12 72197744 72198739 + 0 NA Intergenic Intergenic -13212 ENSMUSG00000021086.5 ENSMUSG00000021086 ENSMUST00000021494 Ccdc175 protein_coding Interval_114945 chr4 87428303 87428823 + 0 NA Intergenic Intergenic -3709 ENSMUSG00000093065.1 ENSMUSG00000093065 ENSMUST00000175324 Gm23154 miRNA Interval_83277 chr18 83362657 83363933 + 0 NA exon (ENSMUSG00000117993.1, exon 3 of 3) lincRNA-exon (ENSMUSG00000117993.1, exon 3 of 3) 7710 ENSMUSG00000117783.1 ENSMUSG00000117783 ENSMUST00000236106 Gm31265 lincRNA Interval_11803 chr1 185546045 185546862 + 0 NA Intergenic Intergenic 59159 ENSMUSG00000102185.1 ENSMUSG00000102185 ENSMUST00000192616 5033404E19Rik transcribed_processed_pseudogene Interval_22581 chr11 11920034 11920500 + 0 NA Intergenic Intergenic -6519 ENSMUSG00000087990.2 ENSMUSG00000087990 ENSMUST00000157365 Gm25058 scaRNA Interval_62854 chr15 97430140 97431115 + 0 NA Intergenic Intergenic 69425 ENSMUSG00000044250.8 ENSMUSG00000044250 ENSMUST00000226495 Pced1b protein_coding Interval_35961 chr12 32857171 32857392 + 0 NA Intergenic Intergenic -21024 ENSMUSG00000112166.1 ENSMUSG00000112166 ENSMUST00000219636 Gm47948 lincRNA Interval_49774 chr13 114961724 114962331 + 0 NA intron (ENSMUSG00000042284.10, intron 28 of 28) protein_coding-intron (ENSMUSG00000042284.10, intron 28 of 28) -26959 ENSMUSG00000114703.1 ENSMUSG00000114703 ENSMUST00000225140 Gm47776 processed_pseudogene Interval_147184 chr7 64192061 64193982 + 0 NA intron (ENSMUSG00000030523.18, intron 2 of 2) protein_coding-intron (ENSMUSG00000030523.18, intron 1 of 26) 9503 ENSMUSG00000108645.1 ENSMUSG00000108645 ENSMUST00000206473 Gm44722 TEC Interval_159408 chr8 94392072 94392781 + 0 NA TTS (ENSMUSG00000031770.16) protein_coding-TTS (ENSMUSG00000031770.16) 1636 ENSMUSG00000031770.16 ENSMUSG00000031770 ENSMUST00000160866 Herpud1 protein_coding Interval_121670 chr5 4943163 4944016 + 0 NA intron (ENSMUSG00000028926.15, intron 3 of 3) protein_coding-intron (ENSMUSG00000028926.15, intron 11 of 14) 41648 ENSMUSG00000106272.1 ENSMUSG00000106272 ENSMUST00000197782 Gm22897 scaRNA Interval_58971 chr15 41162807 41164852 + 0 NA Intergenic Intergenic -9658 ENSMUSG00000048559.5 ENSMUSG00000048559 ENSMUST00000060066 4930555K19Rik processed_pseudogene Interval_112010 chr4 33216174 33216662 + 0 NA intron (ENSMUSG00000054679.8, intron 1 of 2) protein_coding-intron (ENSMUSG00000054679.8, intron 1 of 2) 7155 ENSMUSG00000054679.8 ENSMUSG00000054679 ENSMUST00000108159 Srsf12 protein_coding Interval_52966 chr14 52342943 52344474 + 0 NA TTS (ENSMUSG00000064755.1) snRNA-TTS (ENSMUSG00000064755.1) 931 ENSMUSG00000064755.1 ENSMUSG00000064755 ENSMUST00000082821 Gm26328 snRNA Interval_117517 chr4 124337232 124337813 + 0 NA Intergenic Intergenic -1841 ENSMUSG00000088933.1 ENSMUSG00000088933 ENSMUST00000158308 Gm22983 snRNA Interval_107921 chr3 116807688 116808751 + 0 NA promoter-TSS (ENSMUSG00000033400.14) protein_coding-promoter-TSS (ENSMUSG00000033400.14) -802 ENSMUSG00000033400.14 ENSMUSG00000033400 ENSMUST00000159670 Agl protein_coding Interval_40512 chr12 105395593 105395836 + 0 NA TTS (ENSMUSG00000113314.1) lincRNA-TTS (ENSMUSG00000113314.1) -8305 ENSMUSG00000114181.1 ENSMUSG00000114181 ENSMUST00000222653 Gm46376 lincRNA Interval_28233 chr11 74570696 74573814 + 0 NA intron (ENSMUSG00000038807.19, intron 2 of 25) protein_coding-intron (ENSMUSG00000038807.19, intron 2 of 25) 38660 ENSMUSG00000038807.19 ENSMUSG00000038807 ENSMUST00000145524 Rap1gap2 protein_coding Interval_16195 chr10 61360069 61361118 + 0 NA exon (ENSMUSG00000112256.1, exon 1 of 1) TEC-exon (ENSMUSG00000112256.1, exon 1 of 1) 927 ENSMUSG00000112256.1 ENSMUSG00000112256 ENSMUST00000219025 Gm48077 TEC Interval_105463 chr3 86807979 86808379 + 0 NA intron (ENSMUSG00000028078.14, intron 8 of 15) protein_coding-intron (ENSMUSG00000028078.14, intron 8 of 15) -29526 ENSMUSG00000104108.1 ENSMUSG00000104108 ENSMUST00000194490 Gm37876 antisense Interval_20647 chr10 119968448 119969214 + 0 NA intron (ENSMUSG00000034813.18, intron 7 of 23) protein_coding-intron (ENSMUSG00000034813.18, intron 7 of 22) -116554 ENSMUSG00000085418.1 ENSMUSG00000085418 ENSMUST00000135940 Grip1os1 antisense Interval_17356 chr10 76044281 76045792 + 0 NA Intergenic Intergenic 12386 ENSMUSG00000049764.8 ENSMUSG00000049764 ENSMUST00000061617 Zfp280b protein_coding Interval_160473 chr8 109799780 109801363 + 0 NA intron (ENSMUSG00000031731.16, intron 1 of 2) protein_coding-intron (ENSMUSG00000031731.16, intron 1 of 22) -38724 ENSMUSG00000077549.1 ENSMUSG00000077549 ENSMUST00000104361 Snord71 snoRNA Interval_127767 chr5 107570376 107571568 + 0 NA intron (ENSMUSG00000029276.13, intron 7 of 18) protein_coding-intron (ENSMUSG00000029276.13, intron 7 of 18) 26594 ENSMUSG00000029276.13 ENSMUSG00000029276 ENSMUST00000124140 Glmn protein_coding Interval_116104 chr4 107701199 107701938 + 0 NA intron (ENSMUSG00000085549.7, intron 1 of 2) lincRNA-intron (ENSMUSG00000085549.7, intron 1 of 3) -3614 ENSMUSG00000094267.1 ENSMUSG00000094267 ENSMUST00000179154 Gm25123 miRNA Interval_161442 chr8 120475704 120475915 + 0 NA intron (ENSMUSG00000031822.20, intron 2 of 2) protein_coding-intron (ENSMUSG00000092329.1, intron 1 of 15) -32260 ENSMUSG00000080549.2 ENSMUSG00000080549 ENSMUST00000116899 Gm22715 miRNA Interval_52878 chr14 51555395 51556611 + 0 NA TTS (ENSMUSG00000089836.2) unprocessed_pseudogene-TTS (ENSMUSG00000089836.2) 3213 ENSMUSG00000079244.3 ENSMUSG00000079244 ENSMUST00000096170 Gm5622 protein_coding Interval_44844 chr13 49026959 49027613 + 0 NA Intergenic Intergenic -59269 ENSMUSG00000038014.7 ENSMUSG00000038014 ENSMUST00000060805 Fam120a protein_coding Interval_82705 chr18 76083925 76084885 + 0 NA intron (ENSMUSG00000044646.15, intron 1 of 2) protein_coding-intron (ENSMUSG00000044646.15, intron 3 of 4) 14066 ENSMUSG00000117797.1 ENSMUSG00000117797 ENSMUST00000236092 2900057B20Rik antisense Interval_54608 chr14 71198844 71200268 + 0 NA Intergenic Intergenic -51717 ENSMUSG00000115139.1 ENSMUSG00000115139 ENSMUST00000226131 Gm4251 lincRNA Interval_2001 chr1 35824849 35825986 + 0 NA Intergenic Intergenic 18443 ENSMUSG00000101714.1 ENSMUSG00000101714 ENSMUST00000187528 Gm28415 lincRNA Interval_68073 chr16 64857798 64859312 + 0 NA exon (ENSMUSG00000054604.7, exon 3 of 3) protein_coding-exon (ENSMUSG00000054604.7, exon 3 of 3) 5853 ENSMUSG00000054604.7 ENSMUSG00000054604 ENSMUST00000136532 Cggbp1 protein_coding Interval_23733 chr11 25576573 25576806 + 0 NA Intergenic Intergenic -108451 ENSMUSG00000064761.1 ENSMUSG00000064761 ENSMUST00000082827 Gm23514 snoRNA Interval_43480 chr13 31760605 31761822 + 0 NA Intergenic Intergenic -23473 ENSMUSG00000065843.1 ENSMUSG00000065843 ENSMUST00000083909 Gm25186 snRNA Interval_80705 chr18 46497265 46497602 + 0 NA exon (ENSMUSG00000118116.1, exon 1 of 1) processed_pseudogene-exon (ENSMUSG00000118116.1, exon 1 of 1) 348 ENSMUSG00000118116.1 ENSMUSG00000118116 ENSMUST00000235462 Gm3720 processed_pseudogene Interval_162242 chr8 126396033 126396334 + 0 NA TTS (ENSMUSG00000057060.8) protein_coding-TTS (ENSMUSG00000057060.8) -26345 ENSMUSG00000051671.7 ENSMUSG00000051671 ENSMUST00000211868 Coa6 protein_coding Interval_136736 chr6 58772209 58772445 + 0 NA Intergenic Intergenic 9610 ENSMUSG00000108164.1 ENSMUSG00000108164 ENSMUST00000203675 Gm43899 processed_pseudogene Interval_68179 chr16 66961548 66961790 + 0 NA intron (ENSMUSG00000064115.13, intron 1 of 9) protein_coding-intron (ENSMUSG00000064115.13, intron 1 of 9) -36085 ENSMUSG00000064115.13 ENSMUSG00000064115 ENSMUST00000141282 Cadm2 protein_coding Interval_67652 chr16 55503234 55503494 + 0 NA Intergenic Intergenic 8633 ENSMUSG00000093292.1 ENSMUSG00000093292 ENSMUST00000175551 Mir5118 miRNA Interval_142337 chr6 140698597 140700492 + 0 NA Intergenic Intergenic -29740 ENSMUSG00000079264.1 ENSMUSG00000079264 ENSMUST00000111844 Gm11077 protein_coding Interval_10556 chr1 171815663 171816381 + 0 NA Intergenic Intergenic -23675 ENSMUSG00000038147.13 ENSMUSG00000038147 ENSMUST00000042302 Cd84 protein_coding Interval_47158 chr13 76683141 76684246 + 0 NA TTS (ENSMUSG00000096216.2) processed_pseudogene-TTS (ENSMUSG00000096216.2) 740 ENSMUSG00000096216.2 ENSMUSG00000096216 ENSMUST00000178439 Gm21959 processed_pseudogene Interval_129948 chr5 123251461 123252634 + 0 NA promoter-TSS (ENSMUSG00000029442.18) protein_coding-promoter-TSS (ENSMUSG00000029442.18) 3766 ENSMUSG00000094664.1 ENSMUSG00000094664 ENSMUST00000148282 Rpl35a-ps6 processed_pseudogene Interval_86950 chr19 45155793 45156242 + 0 NA exon (ENSMUSG00000025215.10, exon 3 of 3) protein_coding-exon (ENSMUSG00000025215.10, exon 3 of 3) 3287 ENSMUSG00000092346.1 ENSMUSG00000092346 ENSMUST00000173437 Tlx1os antisense Interval_89302 chr2 19028857 19029470 + 0 NA Intergenic Intergenic 30820 ENSMUSG00000026736.2 ENSMUSG00000026736 ENSMUST00000238778 4930426L09Rik bidirectional_promoter_lncRNA Interval_115557 chr4 100776220 100777966 + 0 NA exon (ENSMUSG00000028532.14, exon 1 of 27) protein_coding-exon (ENSMUSG00000028532.14, exon 1 of 27) 195815 ENSMUSG00000082601.1 ENSMUSG00000082601 ENSMUST00000118145 Gm12700 processed_pseudogene Interval_83477 chr18 86490181 86490899 + 0 NA intron (ENSMUSG00000050321.3, intron 7 of 10) protein_coding-intron (ENSMUSG00000050321.3, intron 7 of 10) -16611 ENSMUSG00000117778.1 ENSMUSG00000117778 ENSMUST00000236142 Gm50384 antisense Interval_90864 chr2 33062822 33063879 + 0 NA intron (ENSMUSG00000038860.15, intron 3 of 3) protein_coding-intron (ENSMUSG00000038860.15, intron 2 of 27) -28566 ENSMUSG00000038860.15 ENSMUSG00000038860 ENSMUST00000124000 Garnl3 protein_coding Interval_134137 chr6 21749089 21749409 + 0 NA Intergenic Intergenic 67948 ENSMUSG00000106855.1 ENSMUSG00000106855 ENSMUST00000201318 5330437M03Rik TEC Interval_157562 chr8 71441555 71442360 + 0 NA Intergenic Intergenic 21665 ENSMUSG00000007950.9 ENSMUSG00000007950 ENSMUST00000212503 Abhd8 protein_coding Interval_47452 chr13 84440853 84441048 + 0 NA Intergenic Intergenic -100837 ENSMUSG00000098245.1 ENSMUSG00000098245 ENSMUST00000182385 Gm26927 processed_pseudogene Interval_38074 chr12 75504067 75505220 + 0 NA intron (ENSMUSG00000021051.10, intron 2 of 11) protein_coding-intron (ENSMUSG00000021051.10, intron 3 of 13) 4102 ENSMUSG00000112254.1 ENSMUSG00000112254 ENSMUST00000218033 Gm47690 TEC Interval_115819 chr4 104935196 104936450 + 0 NA intron (ENSMUSG00000078612.9, intron 1 of 19) protein_coding-intron (ENSMUSG00000078612.9, intron 1 of 19) 22299 ENSMUSG00000078612.9 ENSMUSG00000078612 ENSMUST00000106804 Fyb2 protein_coding Interval_21018 chr10 123357021 123357235 + 0 NA intron (ENSMUSG00000044071.9, intron 1 of 4) protein_coding-intron (ENSMUSG00000044071.9, intron 1 of 5) -75438 ENSMUSG00000084461.1 ENSMUSG00000084461 ENSMUST00000122512 Gm22958 snRNA Interval_65293 chr16 21294793 21295416 + 0 NA intron (ENSMUSG00000096918.2, intron 1 of 4) lincRNA-intron (ENSMUSG00000096918.2, intron 1 of 4) 1768 ENSMUSG00000096918.2 ENSMUSG00000096918 ENSMUST00000181476 Gm16863 lincRNA Interval_58491 chr15 35184585 35185343 + 0 NA Intergenic Intergenic -15840 ENSMUSG00000115345.1 ENSMUSG00000115345 ENSMUST00000228112 Gm33497 lincRNA Interval_20395 chr10 117323811 117324072 + 0 NA Intergenic Intergenic -31073 ENSMUSG00000069515.6 ENSMUSG00000069515 ENSMUST00000092162 Lyz1 protein_coding Interval_63885 chr16 4262698 4262911 + 0 NA Intergenic Intergenic 32503 ENSMUSG00000089645.3 ENSMUSG00000089645 ENSMUST00000161633 Gm5766 transcribed_processed_pseudogene Interval_46067 chr13 60737754 60738696 + 0 NA intron (ENSMUSG00000021559.14, intron 18 of 26) protein_coding-intron (ENSMUSG00000021559.14, intron 18 of 26) -33450 ENSMUSG00000096874.2 ENSMUSG00000096874 ENSMUST00000078515 Gm10312 processed_pseudogene Interval_34632 chr12 8229418 8229709 + 0 NA exon (ENSMUSG00000037669.15, exon 3 of 3) protein_coding-intron (ENSMUSG00000037669.15, intron 3 of 4) -20398 ENSMUSG00000112694.1 ENSMUSG00000112694 ENSMUST00000217927 Gm33037 antisense Interval_88551 chr2 6063443 6063653 + 0 NA Intergenic Intergenic 13121 ENSMUSG00000043241.14 ENSMUSG00000043241 ENSMUST00000144901 Upf2 protein_coding Interval_19204 chr10 95484274 95485331 + 0 NA intron (ENSMUSG00000062981.5, intron 4 of 4) protein_coding-intron (ENSMUSG00000062981.5, intron 5 of 5) -6685 ENSMUSG00000112450.1 ENSMUSG00000112450 ENSMUST00000219947 Gm3619 processed_pseudogene Interval_44682 chr13 47128849 47129300 + 0 NA intron (ENSMUSG00000038068.15, intron 1 of 7) protein_coding-intron (ENSMUSG00000038068.15, intron 1 of 7) 19596 ENSMUSG00000114961.1 ENSMUSG00000114961 ENSMUST00000224519 A930002C04Rik antisense Interval_101504 chr3 3198790 3199083 + 0 NA Intergenic Intergenic 10903 ENSMUSG00000103416.1 ENSMUSG00000103416 ENSMUST00000191986 Gm37338 TEC Interval_49224 chr13 109624931 109626043 + 0 NA intron (ENSMUSG00000021699.17, intron 1 of 14) protein_coding-intron (ENSMUSG00000021699.17, intron 1 of 14) -278322 ENSMUSG00000084651.1 ENSMUSG00000084651 ENSMUST00000122702 Mir1904 miRNA Interval_166961 chr9 64154214 64154989 + 0 NA TTS (ENSMUSG00000032400.18) protein_coding-TTS (ENSMUSG00000032400.18) 18312 ENSMUSG00000032400.18 ENSMUSG00000032400 ENSMUST00000151428 Zwilch protein_coding Interval_51061 chr14 21868770 21869229 + 0 NA exon (ENSMUSG00000114352.1, exon 2 of 2) lincRNA-exon (ENSMUSG00000114352.1, exon 2 of 2) -20312 ENSMUSG00000021773.11 ENSMUSG00000021773 ENSMUST00000177527 Comtd1 protein_coding Interval_169783 chr9 101251061 101252178 + 0 NA intron (ENSMUSG00000043154.15, intron 1 of 13) protein_coding-intron (ENSMUSG00000043154.15, intron 1 of 13) 28667 ENSMUSG00000077393.1 ENSMUSG00000077393 ENSMUST00000104205 Gm24338 snoRNA Interval_35121 chr12 17434508 17434798 + 0 NA Intergenic Intergenic -1965 ENSMUSG00000113246.1 ENSMUSG00000113246 ENSMUST00000220527 Gm36752 lincRNA Interval_115396 chr4 98594572 98594879 + 0 NA intron (ENSMUSG00000061859.17, intron 29 of 44) protein_coding-intron (ENSMUSG00000061859.17, intron 3 of 15) -36860 ENSMUSG00000094456.1 ENSMUSG00000094456 ENSMUST00000175382 Gm22625 miRNA Interval_166205 chr9 57485684 57486304 + 0 NA TTS (ENSMUSG00000111414.1) processed_pseudogene-TTS (ENSMUSG00000111414.1) 2031 ENSMUSG00000074280.6 ENSMUSG00000074280 ENSMUST00000098689 Gm6166 processed_pseudogene Interval_91899 chr2 51128324 51129037 + 0 NA Intergenic Intergenic 20430 ENSMUSG00000017144.8 ENSMUSG00000017144 ENSMUST00000140864 Rnd3 protein_coding Interval_61950 chr15 85442714 85444001 + 0 NA intron (ENSMUSG00000016541.10, intron 10 of 11) protein_coding-intron (ENSMUSG00000016541.10, intron 10 of 11) 59870 ENSMUSG00000096607.1 ENSMUSG00000096607 ENSMUST00000178942 7530416G11Rik protein_coding Interval_98188 chr2 149641169 149641439 + 0 NA Intergenic Intergenic -75019 ENSMUSG00000089270.1 ENSMUSG00000089270 ENSMUST00000158645 Gm24551 snoRNA Interval_136522 chr6 55134358 55134766 + 0 NA Intergenic Intergenic -16649 ENSMUSG00000003476.16 ENSMUSG00000003476 ENSMUST00000169777 Crhr2 protein_coding Interval_131396 chr5 136933910 136934908 + 0 NA TTS (ENSMUSG00000097908.7) lincRNA-TTS (ENSMUSG00000097908.7) 15228 ENSMUSG00000097908.7 ENSMUSG00000097908 ENSMUST00000181190 4933404O12Rik lincRNA Interval_156260 chr8 46596927 46597754 + 0 NA intron (ENSMUSG00000038225.15, intron 6 of 14) protein_coding-intron (ENSMUSG00000038225.15, intron 6 of 14) -7409 ENSMUSG00000110270.1 ENSMUSG00000110270 ENSMUST00000211143 Gm45607 antisense Interval_94268 chr2 87231087 87231558 + 0 NA Intergenic Intergenic -5250 ENSMUSG00000081853.1 ENSMUSG00000081853 ENSMUST00000120217 Gm13735 processed_pseudogene Interval_170066 chr9 104176263 104176735 + 0 NA intron (ENSMUSG00000032560.14, intron 42 of 55) protein_coding-intron (ENSMUSG00000032560.14, intron 42 of 55) -6688 ENSMUSG00000099773.1 ENSMUSG00000099773 ENSMUST00000185927 Hmgb1-rs16 processed_pseudogene Interval_61633 chr15 83061409 83062173 + 0 NA Intergenic Intergenic -38472 ENSMUSG00000058586.12 ENSMUSG00000058586 ENSMUST00000169461 Serhl protein_coding Interval_173650 chrX 101481339 101482472 + 0 NA Intergenic Intergenic 2557 ENSMUSG00000083897.1 ENSMUSG00000083897 ENSMUST00000119596 Gm14843 processed_pseudogene Interval_16969 chr10 70195197 70196235 + 0 NA Intergenic Intergenic -8994 ENSMUSG00000019933.7 ENSMUSG00000019933 ENSMUST00000189468 Mrln protein_coding Interval_53324 chr14 56167212 56167626 + 0 NA intron (ENSMUSG00000015443.9, intron 3 of 5) protein_coding-intron (ENSMUSG00000015443.9, intron 3 of 5) -4618 ENSMUSG00000114908.1 ENSMUSG00000114908 ENSMUST00000224928 Gm9547 processed_pseudogene Interval_42230 chr13 10449385 10450308 + 0 NA intron (ENSMUSG00000097009.2, intron 5 of 7) antisense-intron (ENSMUSG00000097009.2, intron 5 of 7) -67841 ENSMUSG00000113758.1 ENSMUSG00000113758 ENSMUST00000221705 Gm47407 lincRNA Interval_98021 chr2 146823311 146824045 + 0 NA Intergenic Intergenic 16054 ENSMUSG00000087618.1 ENSMUSG00000087618 ENSMUST00000139345 Gm14114 lincRNA Interval_5015 chr1 84225474 84226674 + 0 NA intron (ENSMUSG00000045658.16, intron 2 of 4) protein_coding-intron (ENSMUSG00000045658.16, intron 1 of 2) -7113 ENSMUSG00000098851.1 ENSMUSG00000098851 ENSMUST00000183596 Mir6353 miRNA Interval_132711 chr5 147323451 147323906 + 0 NA Intergenic Intergenic -1238 ENSMUSG00000075543.4 ENSMUSG00000075543 ENSMUST00000100433 Urad protein_coding Interval_19268 chr10 95914084 95914277 + 0 NA Intergenic Intergenic 15577 ENSMUSG00000077268.1 ENSMUSG00000077268 ENSMUST00000104080 Gm24433 snoRNA Interval_102892 chr3 32584775 32584996 + 0 NA TTS (ENSMUSG00000027669.14) protein_coding-TTS (ENSMUSG00000027669.14) 10667 ENSMUSG00000027668.13 ENSMUSG00000027668 ENSMUST00000195334 Mfn1 protein_coding Interval_149105 chr7 93348797 93349153 + 0 NA Intergenic Intergenic -12703 ENSMUSG00000109315.1 ENSMUSG00000109315 ENSMUST00000207475 Gm45037 lincRNA Interval_151325 chr7 121044130 121044404 + 0 NA TTS (ENSMUSG00000109206.1) TEC-TTS (ENSMUSG00000109206.1) -3787 ENSMUSG00000099280.1 ENSMUSG00000099280 ENSMUST00000184804 Gm27991 snoRNA Interval_70418 chr17 10006062 10006753 + 0 NA Intergenic Intergenic 58570 ENSMUSG00000117206.1 ENSMUSG00000117206 ENSMUST00000233132 Gm49809 processed_pseudogene Interval_44653 chr13 46943115 46945230 + 0 NA Intergenic Intergenic 1521 ENSMUSG00000114449.1 ENSMUSG00000114449 ENSMUST00000224563 Gm48325 processed_pseudogene Interval_55204 chr14 79307320 79309475 + 0 NA Intergenic Intergenic -6752 ENSMUSG00000022018.7 ENSMUSG00000022018 ENSMUST00000022595 Rgcc protein_coding Interval_77569 chr17 91893389 91893641 + 0 NA Intergenic Intergenic -21376 ENSMUSG00000117433.1 ENSMUSG00000117433 ENSMUST00000234556 Gm41654 lincRNA Interval_36383 chr12 42946575 42946952 + 0 NA Intergenic Intergenic 68696 ENSMUSG00000112407.1 ENSMUSG00000112407 ENSMUST00000219475 Gm33340 lincRNA Interval_95537 chr2 111783678 111784576 + 0 NA Intergenic Intergenic 6698 ENSMUSG00000044560.3 ENSMUSG00000044560 ENSMUST00000054004 Olfr1302 protein_coding Interval_150834 chr7 115373876 115374591 + 0 NA Intergenic Intergenic 201960 ENSMUSG00000099211.1 ENSMUSG00000099211 ENSMUST00000183778 Gm27684 miRNA Interval_145396 chr7 34462058 34462324 + 0 NA intron (ENSMUSG00000085124.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000085124.1, intron 1 of 2) 24054 ENSMUSG00000085124.1 ENSMUSG00000085124 ENSMUST00000140298 Gm12766 lincRNA Interval_103290 chr3 38178083 38178625 + 0 NA Intergenic Intergenic 29765 ENSMUSG00000106002.1 ENSMUSG00000106002 ENSMUST00000197658 5430434I15Rik lincRNA Interval_99102 chr2 157203727 157205209 + 0 NA promoter-TSS (ENSMUSG00000027641.13) protein_coding-promoter-TSS (ENSMUSG00000027641.13) 66 ENSMUSG00000027641.13 ENSMUSG00000027641 ENSMUST00000141296 Rbl1 protein_coding Interval_87038 chr19 45741172 45743392 + 0 NA intron (ENSMUSG00000025219.13, intron 2 of 5) protein_coding-intron (ENSMUSG00000025219.13, intron 2 of 5) 633 ENSMUSG00000025219.13 ENSMUSG00000025219 ENSMUST00000111925 Fgf8 protein_coding Interval_156160 chr8 45268317 45268711 + 0 NA exon (ENSMUSG00000109764.1, exon 15 of 15) protein_coding-exon (ENSMUSG00000109764.1, exon 15 of 15) -6483 ENSMUSG00000031645.4 ENSMUSG00000031645 ENSMUST00000210622 F11 protein_coding Interval_132905 chr5 148654634 148655549 + 0 NA Intergenic Intergenic -41447 ENSMUSG00000107098.1 ENSMUSG00000107098 ENSMUST00000202418 Gm29815 processed_pseudogene Interval_47024 chr13 74436717 74437275 + 0 NA intron (ENSMUSG00000112964.1, intron 3 of 3) lincRNA-intron (ENSMUSG00000112964.1, intron 3 of 3) -3170 ENSMUSG00000113212.1 ENSMUSG00000113212 ENSMUST00000221116 Gm47435 processed_pseudogene Interval_4400 chr1 73913868 73914841 + 0 NA exon (ENSMUSG00000055322.16, exon 12 of 12) protein_coding-exon (ENSMUSG00000055322.16, exon 12 of 12) -58779 ENSMUSG00000098504.1 ENSMUSG00000098504 ENSMUST00000183826 Mir6351 miRNA Interval_55055 chr14 77539441 77540699 + 0 NA TTS (ENSMUSG00000089365.1) snoRNA-TTS (ENSMUSG00000089365.1) 695 ENSMUSG00000089365.1 ENSMUSG00000089365 ENSMUST00000158740 Gm23823 snoRNA Interval_43834 chr13 37467570 37468536 + 0 NA Intergenic Intergenic -3985 ENSMUSG00000114701.1 ENSMUSG00000114701 ENSMUST00000225986 Gm47731 lincRNA Interval_30529 chr11 94952122 94952880 + 0 NA exon (ENSMUSG00000001506.10, exon 51 of 51) protein_coding-exon (ENSMUSG00000001506.10, exon 51 of 51) -6277 ENSMUSG00000089404.1 ENSMUSG00000089404 ENSMUST00000158779 Gm24877 misc_RNA Interval_108731 chr3 130773654 130774750 + 0 NA Intergenic Intergenic 14937 ENSMUSG00000105716.1 ENSMUSG00000105716 ENSMUST00000196697 Gm43522 lincRNA Interval_111426 chr4 21566269 21566914 + 0 NA Intergenic Intergenic -59789 ENSMUSG00000083654.1 ENSMUSG00000083654 ENSMUST00000118187 Gm11875 processed_pseudogene Interval_139546 chr6 100898308 100898588 + 0 NA Intergenic Intergenic 24708 ENSMUSG00000108074.1 ENSMUSG00000108074 ENSMUST00000205099 4930595O18Rik TEC Interval_114017 chr4 62501786 62502774 + 0 NA promoter-TSS (ENSMUSG00000038422.2) protein_coding-promoter-TSS (ENSMUSG00000038422.2) 1187 ENSMUSG00000038422.2 ENSMUSG00000038422 ENSMUST00000140038 Hdhd3 protein_coding Interval_143556 chr7 12769028 12769220 + 0 NA TTS (ENSMUSG00000070822.5) protein_coding-TTS (ENSMUSG00000070822.5) 1992 ENSMUSG00000070822.5 ENSMUSG00000070822 ENSMUST00000210891 Zscan18 protein_coding Interval_100562 chr2 170139135 170140151 + 0 NA intron (ENSMUSG00000052056.14, intron 1 of 2) protein_coding-intron (ENSMUSG00000052056.14, intron 1 of 6) 8460 ENSMUSG00000052056.14 ENSMUSG00000052056 ENSMUST00000149318 Zfp217 protein_coding Interval_142641 chr6 144497944 144498378 + 0 NA intron (ENSMUSG00000087157.1, intron 3 of 3) protein_coding-intron (ENSMUSG00000041540.16, intron 3 of 13) 16936 ENSMUSG00000087157.1 ENSMUSG00000087157 ENSMUST00000156443 Sox5os2 antisense Interval_3743 chr1 62717393 62717661 + 0 NA intron (ENSMUSG00000100811.1, intron 1 of 1) protein_coding-intron (ENSMUSG00000025969.15, intron 1 of 15) 546 ENSMUSG00000100811.1 ENSMUSG00000100811 ENSMUST00000189205 Gm29083 antisense Interval_147457 chr7 67444351 67444549 + 0 NA promoter-TSS (ENSMUSG00000109329.1) lincRNA-promoter-TSS (ENSMUSG00000109329.1) -517 ENSMUSG00000109329.1 ENSMUSG00000109329 ENSMUST00000208755 Gm33926 lincRNA Interval_83299 chr18 83908441 83909470 + 0 NA Intergenic Intergenic 3159 ENSMUSG00000117826.1 ENSMUSG00000117826 ENSMUST00000235471 Gm50420 processed_pseudogene Interval_45500 chr13 55498780 55499208 + 0 NA exon (ENSMUSG00000021493.15, exon 12 of 13) protein_coding-exon (ENSMUSG00000021493.15, exon 12 of 13) 8698 ENSMUSG00000099096.1 ENSMUSG00000099096 ENSMUST00000184300 Mir6945 miRNA Interval_96400 chr2 122198857 122199582 + 0 NA intron (ENSMUSG00000027229.5, intron 4 of 4) protein_coding-intron (ENSMUSG00000027229.5, intron 6 of 6) -8701 ENSMUSG00000082670.1 ENSMUSG00000082670 ENSMUST00000117052 Gm14050 processed_pseudogene Interval_51129 chr14 23941576 23941865 + 0 NA intron (ENSMUSG00000063142.15, intron 1 of 16) protein_coding-intron (ENSMUSG00000063142.15, intron 1 of 29) -63271 ENSMUSG00000114953.1 ENSMUSG00000114953 ENSMUST00000223837 4930519K11Rik bidirectional_promoter_lncRNA Interval_60447 chr15 73799283 73799572 + 0 NA intron (ENSMUSG00000072487.11, intron 5 of 29) protein_coding-intron (ENSMUSG00000072487.11, intron 3 of 10) 10469 ENSMUSG00000083380.1 ENSMUSG00000083380 ENSMUST00000120938 Ndufb4c processed_pseudogene Interval_154325 chr8 14520994 14521645 + 0 NA intron (ENSMUSG00000047495.15, intron 2 of 2) protein_coding-intron (ENSMUSG00000047495.15, intron 2 of 14) 171141 ENSMUSG00000106670.1 ENSMUSG00000106670 ENSMUST00000199602 Gm44347 miRNA Interval_93100 chr2 70148646 70149589 + 0 NA intron (ENSMUSG00000042064.13, intron 7 of 33) protein_coding-intron (ENSMUSG00000042064.13, intron 8 of 34) 66043 ENSMUSG00000042064.13 ENSMUSG00000042064 ENSMUST00000112241 Myo3b protein_coding Interval_158745 chr8 85781144 85781403 + 0 NA intron (ENSMUSG00000031703.8, intron 6 of 17) protein_coding-intron (ENSMUSG00000031703.8, intron 6 of 17) 50457 ENSMUSG00000109754.1 ENSMUSG00000109754 ENSMUST00000210912 Gm39214 lincRNA Interval_34527 chr12 4905274 4906135 + 0 NA intron (ENSMUSG00000020634.12, intron 1 of 5) protein_coding-intron (ENSMUSG00000020634.12, intron 1 of 6) 1560 ENSMUSG00000020634.12 ENSMUSG00000020634 ENSMUST00000141360 Ubxn2a protein_coding Interval_95661 chr2 113757219 113759382 + 0 NA intron (ENSMUSG00000074934.3, intron 1 of 1) protein_coding-intron (ENSMUSG00000074934.3, intron 1 of 1) 346 ENSMUSG00000074934.3 ENSMUSG00000074934 ENSMUST00000099575 Grem1 protein_coding Interval_168238 chr9 78121003 78122377 + 0 NA intron (ENSMUSG00000009828.15, intron 1 of 1) protein_coding-intron (ENSMUSG00000009828.15, intron 1 of 1) 8847 ENSMUSG00000009828.15 ENSMUSG00000009828 ENSMUST00000142402 Cilk1 protein_coding Interval_152937 chr7 139913904 139916512 + 0 NA TTS (ENSMUSG00000066129.15) protein_coding-TTS (ENSMUSG00000066129.15) -20538 ENSMUSG00000066129.15 ENSMUSG00000066129 ENSMUST00000210154 Kndc1 protein_coding Interval_44326 chr13 43662225 43662617 + 0 NA intron (ENSMUSG00000044164.2, intron 1 of 1) protein_coding-intron (ENSMUSG00000044164.2, intron 1 of 1) -20699 ENSMUSG00000114121.1 ENSMUSG00000114121 ENSMUST00000222349 Gm47728 lincRNA Interval_26499 chr11 58171514 58172108 + 0 NA exon (ENSMUSG00000020514.8, exon 2 of 7) protein_coding-exon (ENSMUSG00000020514.8, exon 2 of 7) 122 ENSMUSG00000020514.8 ENSMUSG00000020514 ENSMUST00000140997 Mrpl22 protein_coding Interval_143249 chr7 4739417 4741475 + 0 NA exon (ENSMUSG00000059851.15, exon 1 of 9) protein_coding-exon (ENSMUSG00000059851.15, exon 1 of 9) -1404 ENSMUSG00000059851.15 ENSMUSG00000059851 ENSMUST00000128018 Kmt5c protein_coding Interval_102672 chr3 29497030 29497266 + 0 NA intron (ENSMUSG00000063600.14, intron 1 of 3) protein_coding-intron (ENSMUSG00000063600.14, intron 4 of 12) 80325 ENSMUSG00000076120.1 ENSMUSG00000076120 ENSMUST00000102165 Mir551b miRNA Interval_74733 chr17 56206854 56207639 + 0 NA exon (ENSMUSG00000001229.9, exon 1 of 19) protein_coding-exon (ENSMUSG00000001229.9, exon 1 of 19) 11659 ENSMUSG00000001229.9 ENSMUSG00000001229 ENSMUST00000233586 Dpp9 protein_coding Interval_39867 chr12 99217219 99217422 + 0 NA intron (ENSMUSG00000033713.12, intron 2 of 3) protein_coding-intron (ENSMUSG00000033713.12, intron 4 of 5) -28351 ENSMUSG00000093419.1 ENSMUSG00000093419 ENSMUST00000177490 Gm19898 processed_pseudogene Interval_92021 chr2 52632542 52633208 + 0 NA intron (ENSMUSG00000017412.15, intron 2 of 13) protein_coding-intron (ENSMUSG00000017412.15, intron 2 of 13) 13121 ENSMUSG00000025201.7 ENSMUSG00000025201 ENSMUST00000183232 Bloc1s2-ps processed_pseudogene Interval_137119 chr6 67575635 67575969 + 0 NA Intergenic Intergenic -9356 ENSMUSG00000104819.1 ENSMUSG00000104819 ENSMUST00000199440 4930515G16Rik processed_pseudogene Interval_113900 chr4 59738753 59739696 + 0 NA intron (ENSMUSG00000045071.14, intron 2 of 2) protein_coding-intron (ENSMUSG00000045071.14, intron 3 of 3) 5966 ENSMUSG00000045071.14 ENSMUSG00000045071 ENSMUST00000221633 E130308A19Rik protein_coding Interval_65475 chr16 22579662 22580767 + 0 NA intron (ENSMUSG00000022861.17, intron 8 of 19) protein_coding-intron (ENSMUSG00000022861.17, intron 8 of 23) -14815 ENSMUSG00000084511.1 ENSMUSG00000084511 ENSMUST00000122562 Gm22481 misc_RNA Interval_8738 chr1 150266134 150267138 + 0 NA promoter-TSS (ENSMUSG00000099875.1) processed_pseudogene-promoter-TSS (ENSMUSG00000099875.1) -637 ENSMUSG00000099875.1 ENSMUSG00000099875 ENSMUST00000121422 Rbm3-ps processed_pseudogene Interval_21513 chr10 129031622 129032436 + 0 NA TTS (ENSMUSG00000107648.4) protein_coding-TTS (ENSMUSG00000107648.4) 7867 ENSMUSG00000107648.4 ENSMUSG00000107648 ENSMUST00000204763 Olfr764-ps1 protein_coding Interval_20105 chr10 114753408 114753652 + 0 NA intron (ENSMUSG00000050663.8, intron 2 of 18) protein_coding-intron (ENSMUSG00000050663.8, intron 2 of 18) -4217 ENSMUSG00000089934.1 ENSMUSG00000089934 ENSMUST00000161975 4930473D10Rik antisense Interval_141968 chr6 136149686 136150923 + 0 NA intron (ENSMUSG00000030209.14, intron 1 of 1) protein_coding-intron (ENSMUSG00000030209.14, intron 2 of 13) -22757 ENSMUSG00000097496.1 ENSMUSG00000097496 ENSMUST00000181537 Gm26653 antisense Interval_142735 chr6 145230874 145231707 + 0 NA promoter-TSS (ENSMUSG00000030265.14) protein_coding-promoter-TSS (ENSMUSG00000030265.14) 9937 ENSMUSG00000107756.1 ENSMUSG00000107756 ENSMUST00000203605 Gm44164 TEC Interval_171929 chr9 122655578 122656215 + 0 NA intron (ENSMUSG00000097736.8, intron 4 of 5) lincRNA-intron (ENSMUSG00000097736.8, intron 2 of 3) -8066 ENSMUSG00000111143.1 ENSMUSG00000111143 ENSMUST00000216699 Gm47134 lincRNA Interval_169394 chr9 96916083 96917335 + 0 NA Intergenic Intergenic 11202 ENSMUSG00000101209.1 ENSMUSG00000101209 ENSMUST00000186232 Gm8524 processed_pseudogene Interval_57381 chr15 10436166 10436405 + 0 NA Intergenic Intergenic 15625 ENSMUSG00000044224.16 ENSMUSG00000044224 ENSMUST00000147224 Dnajc21 protein_coding Interval_88248 chr19 61129622 61131706 + 0 NA intron (ENSMUSG00000074733.14, intron 1 of 3) protein_coding-intron (ENSMUSG00000074733.14, intron 1 of 6) 10153 ENSMUSG00000074733.14 ENSMUSG00000074733 ENSMUST00000148569 Zfp950 protein_coding Interval_150788 chr7 114580362 114581144 + 0 NA Intergenic Intergenic -17863 ENSMUSG00000030670.16 ENSMUSG00000030670 ENSMUST00000147428 Cyp2r1 protein_coding Interval_27460 chr11 67978726 67979028 + 0 NA intron (ENSMUSG00000020903.13, intron 3 of 4) protein_coding-intron (ENSMUSG00000020903.13, intron 3 of 7) 12385 ENSMUSG00000020903.13 ENSMUSG00000020903 ENSMUST00000142649 Stx8 protein_coding Interval_55190 chr14 79201833 79203148 + 0 NA TTS (ENSMUSG00000058997.8) protein_coding-TTS (ENSMUSG00000058997.8) -3300 ENSMUSG00000115111.1 ENSMUSG00000115111 ENSMUST00000228380 Gm4632 antisense Interval_3075 chr1 52930261 52930457 + 0 NA intron (ENSMUSG00000043629.12, intron 1 of 1) protein_coding-intron (ENSMUSG00000043629.12, intron 1 of 1) -56361 ENSMUSG00000089802.1 ENSMUSG00000089802 ENSMUST00000162523 Gm16107 processed_pseudogene Interval_164246 chr9 34213666 34214223 + 0 NA Intergenic Intergenic 13716 ENSMUSG00000098909.1 ENSMUSG00000098909 ENSMUST00000183960 Gm27161 processed_pseudogene Interval_33088 chr11 114320128 114320978 + 0 NA Intergenic Intergenic -36576 ENSMUSG00000081548.1 ENSMUSG00000081548 ENSMUST00000122121 Gm11692 processed_pseudogene Interval_78154 chr18 9428338 9429536 + 0 NA intron (ENSMUSG00000024286.8, intron 1 of 7) protein_coding-intron (ENSMUSG00000024286.8, intron 1 of 9) 7913 ENSMUSG00000117448.1 ENSMUSG00000117448 ENSMUST00000234877 Gm50055 TEC Interval_11312 chr1 180888092 180890100 + 0 NA Intergenic Intergenic -5362 ENSMUSG00000066652.5 ENSMUSG00000066652 ENSMUST00000155546 Lefty2 protein_coding Interval_151481 chr7 122995403 122995766 + 0 NA exon (ENSMUSG00000108551.1, exon 1 of 1) sense_intronic-exon (ENSMUSG00000108551.1, exon 1 of 1) 236 ENSMUSG00000108551.1 ENSMUSG00000108551 ENSMUST00000206967 Gm20274 sense_intronic Interval_47368 chr13 82085520 82086924 + 0 NA Intergenic Intergenic -3535 ENSMUSG00000114461.1 ENSMUSG00000114461 ENSMUST00000224753 Gm48155 lincRNA Interval_121793 chr5 8291916 8293767 + 0 NA intron (ENSMUSG00000040537.17, intron 3 of 4) protein_coding-intron (ENSMUSG00000040537.17, intron 3 of 28) 36554 ENSMUSG00000106265.1 ENSMUSG00000106265 ENSMUST00000198595 Gm42490 TEC Interval_79284 chr18 29977213 29977506 + 0 NA Intergenic Intergenic -289890 ENSMUSG00000117465.1 ENSMUSG00000117465 ENSMUST00000234467 Gm49980 lincRNA Interval_120497 chr4 149000854 149001443 + 0 NA intron (ENSMUSG00000028975.16, intron 3 of 3) protein_coding-intron (ENSMUSG00000028975.16, intron 3 of 8) 40788 ENSMUSG00000086740.1 ENSMUSG00000086740 ENSMUST00000153443 Gm17029 antisense Interval_40299 chr12 103314475 103316210 + 0 NA promoter-TSS (ENSMUSG00000100789.6) antisense-promoter-TSS (ENSMUSG00000100789.6) -573 ENSMUSG00000100789.6 ENSMUSG00000100789 ENSMUST00000191414 Gm29508 antisense Interval_91876 chr2 50914423 50914744 + 0 NA Intergenic Intergenic 4899 ENSMUSG00000083270.1 ENSMUSG00000083270 ENSMUST00000119159 Gm13498 processed_pseudogene Interval_13701 chr10 21178562 21179099 + 0 NA intron (ENSMUSG00000110967.1, intron 3 of 4) lincRNA-intron (ENSMUSG00000110967.1, intron 3 of 4) -8117 ENSMUSG00000111005.1 ENSMUSG00000111005 ENSMUST00000216598 Gm33619 lincRNA Interval_139908 chr6 112617777 112618276 + 0 NA Intergenic Intergenic 12482 ENSMUSG00000029633.9 ENSMUSG00000029633 ENSMUST00000121490 Gm5578 processed_pseudogene Interval_150009 chr7 104663683 104664036 + 0 NA Intergenic Intergenic -2894 ENSMUSG00000073922.2 ENSMUSG00000073922 ENSMUST00000098170 Olfr659 protein_coding Interval_117488 chr4 124102786 124103677 + 0 NA Intergenic Intergenic 175946 ENSMUSG00000103541.1 ENSMUSG00000103541 ENSMUST00000193103 Gm37667 TEC Interval_643 chr1 9441869 9443583 + 0 NA Intergenic Intergenic -2350 ENSMUSG00000104428.1 ENSMUSG00000104428 ENSMUST00000192026 Gm18299 processed_pseudogene Interval_138145 chr6 85469339 85470395 + 0 NA exon (ENSMUSG00000047013.15, exon 13 of 13) protein_coding-exon (ENSMUSG00000047013.15, exon 13 of 13) 8096 ENSMUSG00000030007.8 ENSMUSG00000030007 ENSMUST00000204612 Cct7 protein_coding Interval_19996 chr10 111792673 111792860 + 0 NA intron (ENSMUSG00000112137.1, intron 2 of 2) lincRNA-intron (ENSMUSG00000112137.1, intron 2 of 3) 7068 ENSMUSG00000112137.1 ENSMUSG00000112137 ENSMUST00000219530 Gm47865 lincRNA Interval_135380 chr6 38729964 38731465 + 0 NA intron (ENSMUSG00000061436.15, intron 8 of 14) protein_coding-intron (ENSMUSG00000061436.15, intron 8 of 14) 66835 ENSMUSG00000079598.4 ENSMUSG00000079598 ENSMUST00000238216 Clec2l protein_coding Interval_17089 chr10 71299704 71300130 + 0 NA Intergenic Intergenic -10828 ENSMUSG00000093732.1 ENSMUSG00000093732 ENSMUST00000177104 Gm20609 lincRNA Interval_26097 chr11 54144859 54145133 + 0 NA Intergenic Intergenic -13930 ENSMUSG00000036045.6 ENSMUSG00000036045 ENSMUST00000125096 Gm12221 processed_pseudogene Interval_150833 chr7 115366832 115367763 + 0 NA Intergenic Intergenic 195024 ENSMUSG00000099211.1 ENSMUSG00000099211 ENSMUST00000183778 Gm27684 miRNA Interval_121478 chr4 156058821 156060259 + 0 NA promoter-TSS (ENSMUSG00000029074.14) protein_coding-promoter-TSS (ENSMUSG00000029074.14) 262 ENSMUSG00000086549.1 ENSMUSG00000086549 ENSMUST00000138361 Gm13648 processed_transcript Interval_159972 chr8 105496332 105497273 + 0 NA promoter-TSS (ENSMUSG00000039199.6) protein_coding-promoter-TSS (ENSMUSG00000039199.6) 100 ENSMUSG00000039199.6 ENSMUSG00000039199 ENSMUST00000212538 Zdhhc1 protein_coding Interval_69355 chr16 92423390 92424135 + 0 NA intron (ENSMUSG00000022951.16, intron 1 of 3) protein_coding-intron (ENSMUSG00000022951.16, intron 1 of 3) -23784 ENSMUSG00000022951.16 ENSMUSG00000022951 ENSMUST00000232457 Rcan1 protein_coding Interval_140744 chr6 120997835 120999049 + 0 NA TTS (ENSMUSG00000108171.1) antisense-TTS (ENSMUSG00000108171.1) 39598 ENSMUSG00000108171.1 ENSMUSG00000108171 ENSMUST00000203013 Gm43915 antisense Interval_139182 chr6 97006423 97006979 + 0 NA intron (ENSMUSG00000046500.8, intron 3 of 5) protein_coding-intron (ENSMUSG00000046500.8, intron 3 of 5) 53692 ENSMUSG00000046500.8 ENSMUSG00000046500 ENSMUST00000203930 Tafa4 protein_coding Interval_131126 chr5 135285850 135286835 + 0 NA Intergenic Intergenic 22016 ENSMUSG00000106913.1 ENSMUSG00000106913 ENSMUST00000201947 9430007M09Rik TEC Interval_87986 chr19 57585436 57586580 + 0 NA Intergenic Intergenic 1247 ENSMUSG00000117978.1 ENSMUSG00000117978 ENSMUST00000237779 Gm50286 processed_pseudogene Interval_153094 chr7 141319181 141319787 + 0 NA intron (ENSMUSG00000058886.9, intron 6 of 10) protein_coding-intron (ENSMUSG00000058886.9, intron 6 of 11) 8094 ENSMUSG00000058886.9 ENSMUSG00000058886 ENSMUST00000209608 Deaf1 protein_coding Interval_68162 chr16 66086449 66086725 + 0 NA Intergenic Intergenic 125362 ENSMUSG00000088181.1 ENSMUSG00000088181 ENSMUST00000157556 Gm22217 misc_RNA Interval_25471 chr11 48799658 48801405 + 0 NA promoter-TSS (ENSMUSG00000064500.1) snoRNA-promoter-TSS (ENSMUSG00000064500.1) 199 ENSMUSG00000020372.15 ENSMUSG00000020372 ENSMUST00000136849 Rack1 protein_coding Interval_20926 chr10 122082010 122082314 + 0 NA intron (ENSMUSG00000034620.17, intron 5 of 5) protein_coding-intron (ENSMUSG00000034620.17, intron 6 of 6) 7374 ENSMUSG00000112815.1 ENSMUSG00000112815 ENSMUST00000220024 Gm48828 processed_pseudogene Interval_151641 chr7 125625199 125625506 + 0 NA exon (ENSMUSG00000030745.9, exon 3 of 9) protein_coding-exon (ENSMUSG00000030745.9, exon 3 of 9) 21923 ENSMUSG00000030745.9 ENSMUSG00000030745 ENSMUST00000033000 Il21r protein_coding Interval_131532 chr5 137776295 137776922 + 0 NA Intergenic Intergenic -2829 ENSMUSG00000029725.10 ENSMUSG00000029725 ENSMUST00000152298 Ppp1r35 protein_coding Interval_62655 chr15 95994669 95994880 + 0 NA promoter-TSS (ENSMUSG00000115049.1) processed_transcript-promoter-TSS (ENSMUSG00000115049.1) -645 ENSMUSG00000115049.1 ENSMUSG00000115049 ENSMUST00000227616 Gm49172 processed_transcript Interval_20196 chr10 115617694 115618866 + 0 NA Intergenic Intergenic -17952 ENSMUSG00000112099.1 ENSMUSG00000112099 ENSMUST00000219787 Gm8960 processed_pseudogene Interval_26957 chr11 61840458 61840899 + 0 NA intron (ENSMUSG00000004798.14, intron 4 of 24) protein_coding-intron (ENSMUSG00000004798.14, intron 4 of 26) -24797 ENSMUSG00000098196.1 ENSMUSG00000098196 ENSMUST00000182516 Gm26964 lincRNA Interval_16496 chr10 63194962 63195927 + 0 NA intron (ENSMUSG00000020067.8, intron 1 of 19) protein_coding-intron (ENSMUSG00000020067.8, intron 1 of 19) 48709 ENSMUSG00000045391.4 ENSMUSG00000045391 ENSMUST00000054837 1700120B22Rik bidirectional_promoter_lncRNA Interval_75477 chr17 67087521 67087836 + 0 NA intron (ENSMUSG00000033278.10, intron 3 of 19) protein_coding-intron (ENSMUSG00000033278.10, intron 3 of 32) -61443 ENSMUSG00000093508.1 ENSMUSG00000093508 ENSMUST00000176783 Mir5709 miRNA Interval_104619 chr3 68869047 68870969 + 0 NA exon (ENSMUSG00000046999.2, exon 1 of 1) protein_coding-exon (ENSMUSG00000046999.2, exon 1 of 1) 258 ENSMUSG00000091272.2 ENSMUSG00000091272 ENSMUST00000215570 Gm17641 TEC Interval_9270 chr1 155704664 155705316 + 0 NA intron (ENSMUSG00000026468.14, intron 4 of 4) protein_coding-intron (ENSMUSG00000026468.14, intron 4 of 5) 46694 ENSMUSG00000026468.14 ENSMUSG00000026468 ENSMUST00000195275 Lhx4 protein_coding Interval_137581 chr6 73594887 73595111 + 0 NA intron (ENSMUSG00000107441.1, intron 2 of 3) lincRNA-intron (ENSMUSG00000107441.1, intron 2 of 3) 13674 ENSMUSG00000107441.1 ENSMUSG00000107441 ENSMUST00000204638 Gm31747 lincRNA Interval_83363 chr18 84581611 84582300 + 0 NA intron (ENSMUSG00000048410.17, intron 1 of 8) protein_coding-intron (ENSMUSG00000048410.17, intron 1 of 8) -43790 ENSMUSG00000117676.1 ENSMUSG00000117676 ENSMUST00000236074 Gm50314 antisense Interval_81617 chr18 62174556 62175271 + 0 NA Intergenic Intergenic 5046 ENSMUSG00000045730.4 ENSMUSG00000045730 ENSMUST00000053640 Adrb2 protein_coding Interval_29286 chr11 82690210 82691507 + 0 NA Intergenic Intergenic -34285 ENSMUSG00000083203.1 ENSMUSG00000083203 ENSMUST00000122124 Gm11421 processed_pseudogene Interval_105414 chr3 86091711 86091923 + 0 NA intron (ENSMUSG00000028082.14, intron 1 of 12) protein_coding-intron (ENSMUSG00000028082.14, intron 1 of 14) 7327 ENSMUSG00000028082.14 ENSMUSG00000028082 ENSMUST00000183202 Sh3d19 protein_coding Interval_145853 chr7 40537476 40538278 + 0 NA Intergenic Intergenic -68637 ENSMUSG00000100650.1 ENSMUSG00000100650 ENSMUST00000187799 Gm28807 lincRNA Interval_131641 chr5 139027046 139028123 + 0 NA intron (ENSMUSG00000025855.13, intron 9 of 10) protein_coding-intron (ENSMUSG00000025855.13, intron 9 of 10) 32528 ENSMUSG00000075585.3 ENSMUSG00000075585 ENSMUST00000187923 6330403L08Rik antisense Interval_18558 chr10 87595874 87597466 + 0 NA Intergenic Intergenic 74740 ENSMUSG00000020051.17 ENSMUSG00000020051 ENSMUST00000217864 Pah protein_coding Interval_44300 chr13 43480007 43482093 + 0 NA promoter-TSS (ENSMUSG00000038546.9) protein_coding-promoter-TSS (ENSMUSG00000038546.9) -2143 ENSMUSG00000038546.9 ENSMUSG00000038546 ENSMUST00000222023 Ranbp9 protein_coding Interval_93614 chr2 74970553 74971181 + 0 NA Intergenic Intergenic -35353 ENSMUSG00000084574.1 ENSMUSG00000084574 ENSMUST00000122625 n-R5s198 rRNA Interval_97272 chr2 132824111 132824384 + 0 NA intron (ENSMUSG00000027353.14, intron 6 of 17) protein_coding-intron (ENSMUSG00000027353.14, intron 7 of 18) 8023 ENSMUSG00000027353.14 ENSMUSG00000027353 ENSMUST00000135685 Mcm8 protein_coding Interval_26312 chr11 56027445 56027755 + 0 NA intron (ENSMUSG00000037393.2, intron 3 of 3) protein_coding-intron (ENSMUSG00000037393.2, intron 3 of 3) 13410 ENSMUSG00000037393.2 ENSMUSG00000037393 ENSMUST00000037682 Nmur2 protein_coding Interval_25224 chr11 45554572 45554931 + 0 NA Intergenic Intergenic -84632 ENSMUSG00000077320.1 ENSMUSG00000077320 ENSMUST00000104132 Gm22284 snoRNA Interval_146782 chr7 51117022 51118684 + 0 NA Intergenic Intergenic 37571 ENSMUSG00000109202.1 ENSMUSG00000109202 ENSMUST00000209086 Gm21037 processed_pseudogene Interval_136198 chr6 51984167 51984899 + 0 NA intron (ENSMUSG00000059182.7, intron 4 of 12) protein_coding-intron (ENSMUSG00000059182.7, intron 4 of 12) -28068 ENSMUSG00000108244.1 ENSMUSG00000108244 ENSMUST00000203453 Gm44077 lincRNA Interval_12977 chr10 8866103 8867122 + 0 NA intron (ENSMUSG00000015305.6, intron 1 of 3) protein_coding-intron (ENSMUSG00000015305.6, intron 1 of 19) -5169 ENSMUSG00000111165.1 ENSMUSG00000111165 ENSMUST00000214016 4930553I21Rik TEC Interval_150569 chr7 112501617 112503541 + 0 NA intron (ENSMUSG00000030770.15, intron 2 of 4) protein_coding-intron (ENSMUSG00000030770.15, intron 1 of 12) 33104 ENSMUSG00000085049.1 ENSMUSG00000085049 ENSMUST00000154848 Parvaos antisense Interval_133519 chr6 6117911 6118175 + 0 NA intron (ENSMUSG00000015112.15, intron 2 of 3) protein_coding-intron (ENSMUSG00000015112.15, intron 5 of 17) 55908 ENSMUSG00000015112.15 ENSMUSG00000015112 ENSMUST00000177698 Slc25a13 protein_coding Interval_117969 chr4 127388785 127389204 + 0 NA Intergenic Intergenic 19804 ENSMUSG00000079998.2 ENSMUSG00000079998 ENSMUST00000116114 Gm12947 processed_pseudogene Interval_102006 chr3 14876489 14877097 + 0 NA Intergenic Intergenic 7615 ENSMUSG00000027559.5 ENSMUSG00000027559 ENSMUST00000195834 Car3 protein_coding Interval_72149 chr17 28286830 28288272 + 0 NA intron (ENSMUSG00000002250.16, intron 3 of 5) protein_coding-intron (ENSMUSG00000002250.16, intron 3 of 7) -26026 ENSMUSG00000007570.16 ENSMUSG00000007570 ENSMUST00000156569 Fance protein_coding Interval_61629 chr15 83037814 83039408 + 0 NA Intergenic Intergenic -15528 ENSMUSG00000058099.16 ENSMUSG00000058099 ENSMUST00000231204 Nfam1 protein_coding Interval_45136 chr13 52585017 52585449 + 0 NA intron (ENSMUSG00000021457.14, intron 1 of 1) protein_coding-intron (ENSMUSG00000021457.14, intron 1 of 12) 1730 ENSMUSG00000021457.14 ENSMUSG00000021457 ENSMUST00000140339 Syk protein_coding Interval_137314 chr6 71254318 71254657 + 0 NA intron (ENSMUSG00000055027.17, intron 1 of 9) protein_coding-intron (ENSMUSG00000055027.17, intron 1 of 9) -17184 ENSMUSG00000098623.1 ENSMUSG00000098623 ENSMUST00000184382 Mir8112 miRNA Interval_78551 chr18 14650439 14651496 + 0 NA intron (ENSMUSG00000037013.17, intron 4 of 4) protein_coding-intron (ENSMUSG00000037013.17, intron 5 of 10) -3037 ENSMUSG00000094306.1 ENSMUSG00000094306 ENSMUST00000084007 Gm24924 snRNA Interval_45994 chr13 59853662 59853875 + 0 NA Intergenic Intergenic -19874 ENSMUSG00000114669.1 ENSMUSG00000114669 ENSMUST00000225895 Gm48384 lincRNA Interval_155389 chr8 33151285 33151741 + 0 NA Intergenic Intergenic 40783 ENSMUSG00000083557.1 ENSMUSG00000083557 ENSMUST00000119347 Gm6877 processed_pseudogene Interval_134573 chr6 29673033 29673436 + 0 NA Intergenic Intergenic -34794 ENSMUSG00000001763.14 ENSMUSG00000001763 ENSMUST00000137925 Tspan33 protein_coding Interval_142030 chr6 136622887 136623200 + 0 NA TTS (ENSMUSG00000107760.1) TEC-TTS (ENSMUSG00000107760.1) 2411 ENSMUSG00000107760.1 ENSMUSG00000107760 ENSMUST00000204462 Gm44401 TEC Interval_165207 chr9 45331080 45331357 + 0 NA intron (ENSMUSG00000037129.7, intron 3 of 12) protein_coding-intron (ENSMUSG00000037129.7, intron 3 of 12) -9139 ENSMUSG00000085831.7 ENSMUSG00000085831 ENSMUST00000131342 Lncbate3 antisense Interval_28195 chr11 74139869 74140814 + 0 NA Intergenic Intergenic -13188 ENSMUSG00000070379.5 ENSMUSG00000070379 ENSMUST00000073675 Olfr402 protein_coding Interval_8980 chr1 152875805 152876379 + 0 NA intron (ENSMUSG00000042772.15, intron 1 of 22) protein_coding-intron (ENSMUSG00000042772.15, intron 1 of 22) 4206 ENSMUSG00000100394.1 ENSMUSG00000100394 ENSMUST00000185888 Gm28791 sense_intronic Interval_138033 chr6 84472426 84473423 + 0 NA Intergenic Intergenic -49086 ENSMUSG00000107797.1 ENSMUSG00000107797 ENSMUST00000203521 Gm10445 lincRNA Interval_146518 chr7 46563587 46564155 + 0 NA intron (ENSMUSG00000087492.2, intron 1 of 2) protein_coding-intron (ENSMUSG00000030839.12, intron 9 of 10) -2146 ENSMUSG00000110272.1 ENSMUSG00000110272 ENSMUST00000210436 Gm45310 TEC Interval_99370 chr2 160365365 160368509 + 0 NA exon (ENSMUSG00000074622.4, exon 1 of 1) protein_coding-exon (ENSMUSG00000074622.4, exon 1 of 1) 128 ENSMUSG00000074622.4 ENSMUSG00000074622 ENSMUST00000099126 Mafb protein_coding Interval_57834 chr15 22704973 22705388 + 0 NA intron (ENSMUSG00000040420.15, intron 1 of 6) protein_coding-intron (ENSMUSG00000040420.15, intron 1 of 6) 9650 ENSMUSG00000021927.7 ENSMUSG00000021927 ENSMUST00000022493 Hnrnpa1l2-ps2 processed_pseudogene Interval_128141 chr5 111257300 111257814 + 0 NA intron (ENSMUSG00000033209.17, intron 12 of 22) protein_coding-intron (ENSMUSG00000033209.17, intron 13 of 23) 17537 ENSMUSG00000099130.1 ENSMUSG00000099130 ENSMUST00000183861 Gm27602 misc_RNA Interval_55742 chr14 99480813 99481292 + 0 NA Intergenic Intergenic 39395 ENSMUSG00000115178.1 ENSMUSG00000115178 ENSMUST00000227904 Gm49220 processed_pseudogene Interval_121946 chr5 11963232 11963782 + 0 NA Intergenic Intergenic 35885 ENSMUSG00000105171.1 ENSMUSG00000105171 ENSMUST00000198323 Gm5288 processed_pseudogene Interval_95496 chr2 110229408 110230095 + 0 NA intron (ENSMUSG00000085444.1, intron 1 of 1) antisense-intron (ENSMUSG00000085444.1, intron 1 of 1) 11748 ENSMUSG00000064779.1 ENSMUSG00000064779 ENSMUST00000082845 Gm22997 snRNA Interval_140897 chr6 122651633 122651990 + 0 NA Intergenic Intergenic 25058 ENSMUSG00000046323.8 ENSMUSG00000046323 ENSMUST00000123429 Dppa3 protein_coding Interval_30087 chr11 89079362 89080213 + 0 NA intron (ENSMUSG00000072553.10, intron 1 of 2) protein_coding-intron (ENSMUSG00000072553.10, intron 2 of 3) 4778 ENSMUSG00000072553.10 ENSMUSG00000072553 ENSMUST00000127186 Gm525 protein_coding Interval_28104 chr11 72866368 72866797 + 0 NA intron (ENSMUSG00000055670.14, intron 23 of 54) protein_coding-intron (ENSMUSG00000055670.14, intron 23 of 54) -15210 ENSMUSG00000065298.1 ENSMUSG00000065298 ENSMUST00000083364 Gm26121 snRNA Interval_170352 chr9 107349061 107350422 + 0 NA TTS (ENSMUSG00000037977.6) protein_coding-TTS (ENSMUSG00000037977.6) 1611 ENSMUSG00000037977.6 ENSMUSG00000037977 ENSMUST00000135520 6430571L13Rik protein_coding Interval_105548 chr3 87599893 87600403 + 0 NA Intergenic Intergenic -17251 ENSMUSG00000093230.1 ENSMUSG00000093230 ENSMUST00000175489 Gm24109 miRNA Interval_161438 chr8 120463564 120464858 + 0 NA intron (ENSMUSG00000031822.20, intron 2 of 2) protein_coding-intron (ENSMUSG00000092329.1, intron 1 of 15) -20662 ENSMUSG00000080549.2 ENSMUSG00000080549 ENSMUST00000116899 Gm22715 miRNA Interval_147811 chr7 73689261 73689631 + 0 NA promoter-TSS (ENSMUSG00000108485.1) processed_pseudogene-promoter-TSS (ENSMUSG00000108485.1) -279 ENSMUSG00000108485.1 ENSMUSG00000108485 ENSMUST00000206872 Gm18805 processed_pseudogene Interval_18982 chr10 93559564 93560221 + 0 NA intron (ENSMUSG00000036168.15, intron 2 of 13) protein_coding-intron (ENSMUSG00000036168.15, intron 5 of 15) 5011 ENSMUSG00000036168.15 ENSMUSG00000036168 ENSMUST00000128786 Ccdc38 protein_coding Interval_164410 chr9 36802063 36805973 + 0 NA Intergenic Intergenic -6950 ENSMUSG00000062762.17 ENSMUSG00000062762 ENSMUST00000217339 Ei24 protein_coding Interval_99995 chr2 166306928 166307486 + 0 NA Intergenic Intergenic 33299 ENSMUSG00000084840.1 ENSMUSG00000084840 ENSMUST00000152987 Gm11468 lincRNA Interval_121076 chr4 152650301 152650733 + 0 NA Intergenic Intergenic 27486 ENSMUSG00000083078.1 ENSMUSG00000083078 ENSMUST00000118685 Gm13172 processed_pseudogene Interval_104724 chr3 69756429 69756797 + 0 NA TTS (ENSMUSG00000027787.14) protein_coding-TTS (ENSMUSG00000027787.14) 32377 ENSMUSG00000027787.14 ENSMUSG00000027787 ENSMUST00000150210 Nmd3 protein_coding Interval_69843 chr16 97443661 97444505 + 0 NA Intergenic Intergenic 16689 ENSMUSG00000000386.16 ENSMUSG00000000386 ENSMUST00000142883 Mx1 polymorphic_pseudogene Interval_2359 chr1 38448506 38448723 + 0 NA intron (ENSMUSG00000037138.18, intron 5 of 22) protein_coding-intron (ENSMUSG00000037138.18, intron 5 of 7) -38905 ENSMUSG00000102984.1 ENSMUSG00000102984 ENSMUST00000195175 Gm34727 processed_pseudogene Interval_131995 chr5 142000931 142001150 + 0 NA intron (ENSMUSG00000039683.16, intron 16 of 44) protein_coding-intron (ENSMUSG00000039683.16, intron 12 of 40) -282066 ENSMUSG00000097947.1 ENSMUSG00000097947 ENSMUST00000182990 Gm26970 processed_pseudogene Interval_154660 chr8 22415831 22416696 + 0 NA intron (ENSMUSG00000031533.4, intron 2 of 4) protein_coding-intron (ENSMUSG00000031533.4, intron 2 of 6) 4865 ENSMUSG00000031533.4 ENSMUSG00000031533 ENSMUST00000211083 Mrps31 protein_coding Interval_1853 chr1 34150122 34150573 + 0 NA intron (ENSMUSG00000026131.20, intron 7 of 32) protein_coding-intron (ENSMUSG00000026131.20, intron 6 of 97) 28099 ENSMUSG00000096992.3 ENSMUSG00000096992 ENSMUST00000187268 Gm26788 processed_transcript Interval_154388 chr8 15223530 15224678 + 0 NA intron (ENSMUSG00000110286.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000110286.1, intron 1 of 2) 3433 ENSMUSG00000077503.1 ENSMUSG00000077503 ENSMUST00000104315 Gm24231 snoRNA Interval_69041 chr16 90269506 90269704 + 0 NA intron (ENSMUSG00000022983.16, intron 1 of 19) protein_coding-intron (ENSMUSG00000022983.16, intron 1 of 19) 14898 ENSMUSG00000022983.16 ENSMUSG00000022983 ENSMUST00000231776 Scaf4 protein_coding Interval_109538 chr3 144213813 144214502 + 0 NA Intergenic Intergenic -11194 ENSMUSG00000028266.17 ENSMUSG00000028266 ENSMUST00000124891 Lmo4 protein_coding Interval_146871 chr7 54147705 54147960 + 0 NA Intergenic Intergenic 65553 ENSMUSG00000092856.2 ENSMUSG00000092856 ENSMUST00000175115 Gm25956 miRNA Interval_137172 chr6 68963992 68964459 + 0 NA Intergenic Intergenic -2218 ENSMUSG00000076557.2 ENSMUSG00000076557 ENSMUST00000196933 Igkv4-83 IG_V_pseudogene Interval_79132 chr18 24854608 24855598 + 0 NA intron (ENSMUSG00000034295.10, intron 3 of 24) protein_coding-intron (ENSMUSG00000034295.10, intron 3 of 26) 93940 ENSMUSG00000088920.1 ENSMUSG00000088920 ENSMUST00000158295 Gm24294 misc_RNA Interval_56749 chr14 121844316 121844954 + 0 NA Intergenic Intergenic 13621 ENSMUSG00000115443.1 ENSMUSG00000115443 ENSMUST00000228932 Gm9395 processed_pseudogene Interval_168642 chr9 84888852 84891026 + 0 NA promoter-TSS (ENSMUSG00000102064.1) lincRNA-promoter-TSS (ENSMUSG00000102064.1) -606 ENSMUSG00000102064.1 ENSMUSG00000102064 ENSMUST00000188309 Gm28625 lincRNA Interval_166754 chr9 62438666 62438957 + 0 NA intron (ENSMUSG00000041729.15, intron 3 of 3) protein_coding-intron (ENSMUSG00000041729.15, intron 3 of 11) 10337 ENSMUSG00000041729.15 ENSMUSG00000041729 ENSMUST00000123379 Coro2b protein_coding Interval_34589 chr12 6112842 6113223 + 0 NA Intergenic Intergenic 107365 ENSMUSG00000111898.1 ENSMUSG00000111898 ENSMUST00000220422 Gm48608 processed_pseudogene Interval_160767 chr8 112032725 112033756 + 0 NA Intergenic Intergenic -18232 ENSMUSG00000092086.2 ENSMUSG00000092086 ENSMUST00000071732 Gm6793 processed_pseudogene Interval_97720 chr2 143294464 143295747 + 0 NA Intergenic Intergenic -54407 ENSMUSG00000083787.1 ENSMUSG00000083787 ENSMUST00000119735 Gm11644 processed_pseudogene Interval_34304 chr12 3253257 3254198 + 0 NA intron (ENSMUSG00000020671.9, intron 3 of 5) protein_coding-intron (ENSMUSG00000020671.9, intron 3 of 5) 17812 ENSMUSG00000079179.9 ENSMUSG00000079179 ENSMUST00000049684 Rab10os antisense Interval_167978 chr9 75205424 75205625 + 0 NA intron (ENSMUSG00000034593.16, intron 35 of 40) protein_coding-intron (ENSMUSG00000034593.16, intron 35 of 40) -26552 ENSMUSG00000033590.8 ENSMUSG00000033590 ENSMUST00000216529 Myo5c protein_coding Interval_138521 chr6 88883602 88885755 + 0 NA intron (ENSMUSG00000002870.8, intron 14 of 15) protein_coding-intron (ENSMUSG00000002870.8, intron 14 of 15) 2023 ENSMUSG00000107432.1 ENSMUSG00000107432 ENSMUST00000204113 Gm36189 processed_pseudogene Interval_157509 chr8 71026141 71027090 + 0 NA promoter-TSS (ENSMUSG00000110554.1) lincRNA-promoter-TSS (ENSMUSG00000110554.1) -177 ENSMUSG00000110554.1 ENSMUSG00000110554 ENSMUST00000212780 Gm35256 lincRNA Interval_111935 chr4 32669388 32670190 + 0 NA intron (ENSMUSG00000058006.12, intron 7 of 101) protein_coding-intron (ENSMUSG00000058006.12, intron 7 of 101) 12670 ENSMUSG00000058006.12 ENSMUSG00000058006 ENSMUST00000124361 Mdn1 protein_coding Interval_76310 chr17 78955211 78956276 + 0 NA intron (ENSMUSG00000024070.15, intron 16 of 18) protein_coding-intron (ENSMUSG00000024070.15, intron 15 of 17) 10716 ENSMUSG00000024082.5 ENSMUSG00000024082 ENSMUST00000232821 Ndufaf7 protein_coding Interval_153543 chr8 3346442 3346814 + 0 NA Intergenic Intergenic -6809 ENSMUSG00000004568.13 ENSMUSG00000004568 ENSMUST00000145360 Arhgef18 protein_coding Interval_12991 chr10 8913081 8913508 + 0 NA intron (ENSMUSG00000111731.1, intron 2 of 3) lincRNA-intron (ENSMUSG00000111731.1, intron 2 of 3) 9313 ENSMUSG00000111731.1 ENSMUSG00000111731 ENSMUST00000215873 Gm48727 lincRNA Interval_82078 chr18 67590268 67590488 + 0 NA intron (ENSMUSG00000024533.17, intron 1 of 16) protein_coding-intron (ENSMUSG00000024533.17, intron 1 of 16) 27984 ENSMUSG00000091695.2 ENSMUSG00000091695 ENSMUST00000163749 Gm17669 processed_pseudogene Interval_66877 chr16 38271572 38274231 + 0 NA intron (ENSMUSG00000022809.4, intron 1 of 8) protein_coding-intron (ENSMUSG00000022809.4, intron 1 of 8) 21923 ENSMUSG00000022809.4 ENSMUSG00000022809 ENSMUST00000023504 Nr1i2 protein_coding Interval_111514 chr4 22320029 22320342 + 0 NA Intergenic Intergenic -37375 ENSMUSG00000040410.14 ENSMUSG00000040410 ENSMUST00000184582 Fbxl4 protein_coding Interval_162080 chr8 124948094 124949979 + 0 NA exon (ENSMUSG00000031987.6, exon 1 of 5) protein_coding-exon (ENSMUSG00000031987.6, exon 1 of 5) 288 ENSMUSG00000031987.6 ENSMUSG00000031987 ENSMUST00000034469 Egln1 protein_coding Interval_37317 chr12 65093034 65093241 + 0 NA promoter-TSS (ENSMUSG00000055884.8) protein_coding-promoter-TSS (ENSMUSG00000055884.8) 6869 ENSMUSG00000112992.1 ENSMUSG00000112992 ENSMUST00000223249 Gm47869 processed_pseudogene Interval_99234 chr2 158295024 158296351 + 0 NA Intergenic Intergenic -10806 ENSMUSG00000016024.9 ENSMUSG00000016024 ENSMUST00000129811 Lbp protein_coding Interval_117178 chr4 120270919 120271803 + 0 NA intron (ENSMUSG00000052135.8, intron 1 of 1) protein_coding-intron (ENSMUSG00000052135.8, intron 1 of 1) 15988 ENSMUSG00000052135.8 ENSMUSG00000052135 ENSMUST00000102656 Foxo6 protein_coding Interval_114410 chr4 75510465 75512566 + 0 NA Intergenic Intergenic 130755 ENSMUSG00000084026.1 ENSMUSG00000084026 ENSMUST00000120554 Gm11259 processed_pseudogene Interval_79102 chr18 24551603 24552887 + 0 NA Intergenic Intergenic -6357 ENSMUSG00000095437.1 ENSMUSG00000095437 ENSMUST00000116938 Gm23606 miRNA Interval_251 KZ289068.1 315302 316253 + 0 NA NA NA NA NA Interval_15776 chr10 56395201 56395385 + 0 NA intron (ENSMUSG00000050953.10, intron 1 of 2) protein_coding-intron (ENSMUSG00000050953.10, intron 1 of 2) 17844 ENSMUSG00000050953.10 ENSMUSG00000050953 ENSMUST00000220069 Gja1 protein_coding Interval_95684 chr2 114106763 114106982 + 0 NA intron (ENSMUSG00000040383.16, intron 32 of 33) protein_coding-intron (ENSMUSG00000040383.16, intron 32 of 34) 43698 ENSMUSG00000098464.1 ENSMUSG00000098464 ENSMUST00000184524 Mir7002 miRNA Interval_13078 chr10 11199651 11200699 + 0 NA intron (ENSMUSG00000090112.8, intron 16 of 20) protein_coding-intron (ENSMUSG00000090112.8, intron 25 of 29) -4844 ENSMUSG00000090112.8 ENSMUSG00000090112 ENSMUST00000161910 Shprh protein_coding Interval_37122 chr12 58625150 58625479 + 0 NA Intergenic Intergenic -138592 ENSMUSG00000112487.1 ENSMUSG00000112487 ENSMUST00000219517 Gm18873 processed_pseudogene Interval_13959 chr10 25051875 25052260 + 0 NA Intergenic Intergenic -1292 ENSMUSG00000112597.1 ENSMUSG00000112597 ENSMUST00000218577 Gm4777 processed_pseudogene Interval_39666 chr12 91929184 91929408 + 0 NA Intergenic Intergenic -38023 ENSMUSG00000066389.1 ENSMUSG00000066389 ENSMUST00000085128 Rpl31-ps1 processed_pseudogene Interval_96735 chr2 127559212 127559970 + 0 NA Intergenic Intergenic 9835 ENSMUSG00000083648.1 ENSMUSG00000083648 ENSMUST00000121178 Gm14229 processed_pseudogene Interval_33447 chr11 116585866 116587451 + 0 NA intron (ENSMUSG00000020804.12, intron 1 of 3) protein_coding-intron (ENSMUSG00000020804.12, intron 1 of 3) -7029 ENSMUSG00000020804.12 ENSMUSG00000020804 ENSMUST00000132601 Aanat protein_coding Interval_72133 chr17 28216970 28218555 + 0 NA TTS (ENSMUSG00000002257.8) protein_coding-TTS (ENSMUSG00000002257.8) 6405 ENSMUSG00000117028.1 ENSMUSG00000117028 ENSMUST00000232711 Gm49874 antisense Interval_8935 chr1 152497481 152498053 + 0 NA intron (ENSMUSG00000032649.14, intron 7 of 13) protein_coding-intron (ENSMUSG00000032649.14, intron 7 of 11) 55277 ENSMUSG00000026482.13 ENSMUSG00000026482 ENSMUST00000149536 Rgl1 protein_coding Interval_35637 chr12 26440968 26441379 + 0 NA Intergenic Intergenic -4354 ENSMUSG00000113033.1 ENSMUSG00000113033 ENSMUST00000220508 Gm47799 unprocessed_pseudogene Interval_1595 chr1 28754464 28754708 + 0 NA Intergenic Intergenic 25666 ENSMUSG00000048411.4 ENSMUSG00000048411 ENSMUST00000059937 Gm597 protein_coding Interval_71861 chr17 26584099 26585249 + 0 NA intron (ENSMUSG00000001576.15, intron 1 of 9) protein_coding-intron (ENSMUSG00000001576.15, intron 1 of 8) -3747 ENSMUSG00000094969.1 ENSMUSG00000094969 ENSMUST00000178795 Gm22420 miRNA Interval_173538 chrX 99042361 99043214 + 0 NA exon (ENSMUSG00000031216.13, exon 1 of 14) protein_coding-exon (ENSMUSG00000031216.13, exon 1 of 14) 39539 ENSMUSG00000031216.13 ENSMUSG00000031216 ENSMUST00000127361 Stard8 protein_coding Interval_76121 chr17 75157931 75159135 + 0 NA intron (ENSMUSG00000001870.16, intron 4 of 34) protein_coding-intron (ENSMUSG00000001870.16, intron 4 of 33) -6674 ENSMUSG00000084025.1 ENSMUSG00000084025 ENSMUST00000120159 Gm6276 processed_pseudogene Interval_81445 chr18 60797121 60797423 + 0 NA Intergenic Intergenic -6633 ENSMUSG00000024610.15 ENSMUSG00000024610 ENSMUST00000238179 Cd74 protein_coding Interval_3931 chr1 64916657 64917491 + 0 NA intron (ENSMUSG00000051344.13, intron 2 of 4) protein_coding-intron (ENSMUSG00000051344.13, intron 3 of 7) -17328 ENSMUSG00000097264.1 ENSMUSG00000097264 ENSMUST00000181350 Rpl31-ps24 processed_pseudogene Interval_170104 chr9 104521438 104521669 + 0 NA Intergenic Intergenic -40043 ENSMUSG00000089116.1 ENSMUSG00000089116 ENSMUST00000158491 Gm25904 snoRNA Interval_49139 chr13 108390301 108391901 + 0 NA intron (ENSMUSG00000021697.12, intron 11 of 12) protein_coding-intron (ENSMUSG00000021697.12, intron 11 of 12) 33675 ENSMUSG00000021697.12 ENSMUSG00000021697 ENSMUST00000172402 Depdc1b protein_coding Interval_95090 chr2 103789461 103790787 + 0 NA intron (ENSMUSG00000027184.14, intron 1 of 3) protein_coding-intron (ENSMUSG00000027184.14, intron 2 of 18) 6744 ENSMUSG00000027184.14 ENSMUSG00000027184 ENSMUST00000146527 Caprin1 protein_coding Interval_145651 chr7 36751123 36751326 + 0 NA TTS (ENSMUSG00000089273.1) misc_RNA-TTS (ENSMUSG00000089273.1) 249 ENSMUSG00000089273.1 ENSMUSG00000089273 ENSMUST00000158648 Gm24550 misc_RNA Interval_8433 chr1 139268528 139269188 + 0 NA intron (ENSMUSG00000063681.14, intron 4 of 9) protein_coding-intron (ENSMUSG00000063681.14, intron 5 of 11) 59390 ENSMUSG00000063681.14 ENSMUSG00000063681 ENSMUST00000197035 Crb1 protein_coding Interval_31545 chr11 101278482 101279483 + 0 NA promoter-TSS (ENSMUSG00000078653.4) protein_coding-promoter-TSS (ENSMUSG00000078653.4) -39 ENSMUSG00000017188.3 ENSMUSG00000017188 ENSMUST00000168089 Coa3 protein_coding Interval_69194 chr16 91247639 91248781 + 0 NA Intergenic Intergenic -14288 ENSMUSG00000102958.1 ENSMUSG00000102958 ENSMUST00000195507 Gm37016 TEC Interval_47515 chr13 86100690 86100987 + 0 NA Intergenic Intergenic -54491 ENSMUSG00000017778.14 ENSMUSG00000017778 ENSMUST00000017922 Cox7c protein_coding Interval_117275 chr4 121203480 121204457 + 0 NA intron (ENSMUSG00000049878.13, intron 1 of 7) protein_coding-intron (ENSMUSG00000049878.13, intron 1 of 7) 11116 ENSMUSG00000049878.13 ENSMUSG00000049878 ENSMUST00000222814 Rlf protein_coding Interval_23722 chr11 25353708 25353932 + 0 NA intron (ENSMUSG00000033015.16, intron 3 of 7) lincRNA-intron (ENSMUSG00000033015.16, intron 2 of 4) 52557 ENSMUSG00000086439.1 ENSMUSG00000086439 ENSMUST00000145127 Gm12069 lincRNA Interval_116679 chr4 116616922 116617208 + 0 NA TTS (ENSMUSG00000028693.15) protein_coding-TTS (ENSMUSG00000028693.15) -10817 ENSMUSG00000028693.15 ENSMUSG00000028693 ENSMUST00000148436 Nasp protein_coding Interval_143641 chr7 13656847 13657183 + 0 NA exon (ENSMUSG00000099400.1, exon 1 of 1) processed_pseudogene-exon (ENSMUSG00000099400.1, exon 1 of 1) 3019 ENSMUSG00000099400.1 ENSMUSG00000099400 ENSMUST00000187624 Kat6b-ps1 processed_pseudogene Interval_49629 chr13 113656948 113657680 + 0 NA Intergenic Intergenic 6362 ENSMUSG00000051456.4 ENSMUSG00000051456 ENSMUST00000054650 Hspb3 protein_coding Interval_150914 chr7 116323258 116323893 + 0 NA Intergenic Intergenic 9682 ENSMUSG00000064741.1 ENSMUSG00000064741 ENSMUST00000082807 Snord14a snoRNA Interval_33939 chr11 119546479 119550044 + 0 NA promoter-TSS (ENSMUSG00000025582.4) protein_coding-promoter-TSS (ENSMUSG00000025582.4) -369 ENSMUSG00000087675.1 ENSMUSG00000087675 ENSMUST00000135630 Gm11762 processed_transcript Interval_44453 chr13 44906468 44906872 + 0 NA exon (ENSMUSG00000038518.15, exon 9 of 19) protein_coding-exon (ENSMUSG00000038518.15, exon 9 of 19) -68387 ENSMUSG00000088189.1 ENSMUSG00000088189 ENSMUST00000157564 Gm22213 snoRNA Interval_164420 chr9 36895075 36895579 + 0 NA exon (ENSMUSG00000035934.16, exon 11 of 13) protein_coding-exon (ENSMUSG00000035934.16, exon 11 of 13) 62519 ENSMUSG00000032118.16 ENSMUSG00000032118 ENSMUST00000161978 Fez1 protein_coding Interval_114483 chr4 80904573 80905434 + 0 NA Intergenic Intergenic -5643 ENSMUSG00000048706.3 ENSMUSG00000048706 ENSMUST00000055922 Lurap1l protein_coding Interval_36613 chr12 51477881 51478133 + 0 NA Intergenic Intergenic -39319 ENSMUSG00000111959.1 ENSMUSG00000111959 ENSMUST00000220340 Gm18503 processed_pseudogene Interval_87323 chr19 47674326 47674890 + 0 NA intron (ENSMUSG00000025064.15, intron 2 of 2) protein_coding-intron (ENSMUSG00000025064.15, intron 11 of 53) 1228 ENSMUSG00000025064.15 ENSMUSG00000025064 ENSMUST00000235883 Col17a1 protein_coding Interval_132792 chr5 147908132 147908384 + 0 NA Intergenic Intergenic -28389 ENSMUSG00000029650.10 ENSMUSG00000029650 ENSMUST00000138244 Slc46a3 protein_coding Interval_70054 chr17 5030210 5031310 + 0 NA intron (ENSMUSG00000069729.14, intron 1 of 19) protein_coding-intron (ENSMUSG00000069729.14, intron 1 of 18) 35821 ENSMUSG00000069729.14 ENSMUSG00000069729 ENSMUST00000146703 Arid1b protein_coding Interval_100886 chr2 173118521 173119767 + 0 NA promoter-TSS (ENSMUSG00000087382.7) antisense-promoter-TSS (ENSMUSG00000087382.7) 381 ENSMUSG00000070495.11 ENSMUSG00000070495 ENSMUST00000179693 Ctcfl protein_coding Interval_174112 chrX 135559648 135560075 + 0 NA Intergenic Intergenic 10651 ENSMUSG00000096119.1 ENSMUSG00000096119 ENSMUST00000178856 Gm6228 transcribed_unprocessed_pseudogene Interval_130497 chr5 128417914 128419118 + 0 NA intron (ENSMUSG00000034310.8, intron 1 of 8) protein_coding-intron (ENSMUSG00000034310.8, intron 1 of 8) -25900 ENSMUSG00000106275.1 ENSMUSG00000106275 ENSMUST00000200324 Gm42495 lincRNA Interval_86536 chr19 41541665 41541935 + 0 NA intron (ENSMUSG00000025019.17, intron 4 of 7) protein_coding-intron (ENSMUSG00000025019.17, intron 4 of 7) -34067 ENSMUSG00000025019.17 ENSMUSG00000025019 ENSMUST00000172371 Lcor protein_coding Interval_42957 chr13 21914290 21915107 + 0 NA Intergenic Intergenic 10318 ENSMUSG00000105839.1 ENSMUSG00000105839 ENSMUST00000196554 Gm44456 miRNA Interval_18232 chr10 83995904 83996783 + 0 NA intron (ENSMUSG00000111699.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000111699.1, intron 1 of 1) 8517 ENSMUSG00000111699.1 ENSMUSG00000111699 ENSMUST00000215772 C230099D08Rik lincRNA Interval_111694 chr4 26015448 26016522 + 0 NA Intergenic Intergenic 75620 ENSMUSG00000088547.1 ENSMUSG00000088547 ENSMUST00000157922 Gm24965 snRNA Interval_37793 chr12 72009138 72009702 + 0 NA Intergenic Intergenic 39839 ENSMUSG00000114155.1 ENSMUSG00000114155 ENSMUST00000221336 Gm7986 processed_pseudogene Interval_73563 chr17 40482988 40484014 + 0 NA Intergenic Intergenic -3972 ENSMUSG00000117020.1 ENSMUSG00000117020 ENSMUST00000232752 Gm49845 unprocessed_pseudogene Interval_166922 chr9 63955869 63956336 + 0 NA intron (ENSMUSG00000036867.7, intron 3 of 3) protein_coding-intron (ENSMUSG00000036867.7, intron 3 of 3) -28353 ENSMUSG00000111058.1 ENSMUSG00000111058 ENSMUST00000214827 Gm36033 lincRNA Interval_35491 chr12 23022226 23022553 + 0 NA Intergenic Intergenic -3577 ENSMUSG00000112996.1 ENSMUSG00000112996 ENSMUST00000223360 Gm48064 processed_pseudogene Interval_100123 chr2 167198706 167200262 + 0 NA intron (ENSMUSG00000017969.13, intron 9 of 9) protein_coding-intron (ENSMUSG00000017969.13, intron 9 of 9) -2092 ENSMUSG00000086098.1 ENSMUSG00000086098 ENSMUST00000143645 Gm14291 antisense Interval_95334 chr2 106710526 106712377 + 0 NA intron (ENSMUSG00000016386.15, intron 2 of 2) protein_coding-intron (ENSMUSG00000016386.15, intron 2 of 6) 16231 ENSMUSG00000016386.15 ENSMUSG00000016386 ENSMUST00000133401 Mpped2 protein_coding Interval_126861 chr5 96000293 96000779 + 0 NA Intergenic Intergenic 26296 ENSMUSG00000107092.1 ENSMUSG00000107092 ENSMUST00000200970 Gm7993 processed_pseudogene Interval_32048 chr11 104696570 104696887 + 0 NA intron (ENSMUSG00000040838.10, intron 4 of 187) protein_coding-intron (ENSMUSG00000040838.10, intron 4 of 20) 11021 ENSMUSG00000040838.10 ENSMUSG00000040838 ENSMUST00000175713 Gm11639 protein_coding Interval_24929 chr11 41558600 41559012 + 0 NA Intergenic Intergenic -32316 ENSMUSG00000081847.1 ENSMUSG00000081847 ENSMUST00000117114 Gm12142 processed_pseudogene Interval_159615 chr8 95801466 95802535 + 0 NA intron (ENSMUSG00000036550.16, intron 1 of 3) protein_coding-intron (ENSMUSG00000036550.16, intron 1 of 47) -4744 ENSMUSG00000074136.9 ENSMUSG00000074136 ENSMUST00000132616 4930513N10Rik antisense Interval_99907 chr2 165741693 165742878 + 0 NA intron (ENSMUSG00000017897.18, intron 4 of 6) protein_coding-intron (ENSMUSG00000017897.18, intron 9 of 15) -75428 ENSMUSG00000081758.1 ENSMUSG00000081758 ENSMUST00000118200 Gm11460 processed_pseudogene Interval_3893 chr1 64523835 64525037 + 0 NA Intergenic Intergenic -51952 ENSMUSG00000025958.14 ENSMUSG00000025958 ENSMUST00000190979 Creb1 protein_coding Interval_95110 chr2 103976178 103976960 + 0 NA TTS (ENSMUSG00000032698.15) protein_coding-TTS (ENSMUSG00000032698.15) 18574 ENSMUSG00000032698.15 ENSMUSG00000032698 ENSMUST00000133210 Lmo2 protein_coding Interval_90619 chr2 31514642 31515270 + 0 NA TTS (ENSMUSG00000076441.9) protein_coding-TTS (ENSMUSG00000076441.9) 14230 ENSMUSG00000076441.9 ENSMUSG00000076441 ENSMUST00000130195 Ass1 protein_coding Interval_66128 chr16 31826091 31826645 + 0 NA intron (ENSMUSG00000022770.17, intron 13 of 24) protein_coding-intron (ENSMUSG00000022770.17, intron 13 of 24) -13757 ENSMUSG00000116778.1 ENSMUSG00000116778 ENSMUST00000231752 Gm49713 processed_pseudogene Interval_25688 chr11 50791574 50793060 + 0 NA intron (ENSMUSG00000036545.9, intron 18 of 20) protein_coding-intron (ENSMUSG00000036545.9, intron 18 of 21) -17334 ENSMUSG00000088205.1 ENSMUSG00000088205 ENSMUST00000157580 Gm23392 rRNA Interval_69146 chr16 90950436 90951321 + 0 NA promoter-TSS (ENSMUSG00000022973.18) protein_coding-promoter-TSS (ENSMUSG00000022973.18) -2917 ENSMUSG00000093256.1 ENSMUSG00000093256 ENSMUST00000175515 Gm22933 miRNA Interval_69990 chr17 4069731 4070531 + 0 NA intron (ENSMUSG00000116975.1, intron 3 of 3) lincRNA-intron (ENSMUSG00000116975.1, intron 3 of 3) 12864 ENSMUSG00000116975.1 ENSMUSG00000116975 ENSMUST00000231647 4930470H14Rik lincRNA Interval_12051 chr1 189127581 189127957 + 0 NA Intergenic Intergenic -48065 ENSMUSG00000104464.1 ENSMUSG00000104464 ENSMUST00000192327 Gm18698 processed_pseudogene Interval_115393 chr4 98512600 98513851 + 0 NA intron (ENSMUSG00000061859.17, intron 21 of 44) protein_coding-intron (ENSMUSG00000061859.17, intron 21 of 43) 44640 ENSMUSG00000094456.1 ENSMUSG00000094456 ENSMUST00000175382 Gm22625 miRNA Interval_97699 chr2 142901014 142903510 + 0 NA promoter-TSS (ENSMUSG00000038844.10) protein_coding-promoter-TSS (ENSMUSG00000038844.10) -703 ENSMUSG00000086504.1 ENSMUSG00000086504 ENSMUST00000124774 Kif16bos antisense Interval_81899 chr18 65686622 65687324 + 0 NA exon (ENSMUSG00000042439.13, exon 6 of 6) protein_coding-exon (ENSMUSG00000042439.13, exon 6 of 6) -11311 ENSMUSG00000046610.15 ENSMUSG00000046610 ENSMUST00000134343 Oacyl protein_coding Interval_133740 chr6 10939676 10940094 + 0 NA intron (ENSMUSG00000107847.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000107847.1, intron 1 of 2) 34493 ENSMUSG00000107948.2 ENSMUSG00000107948 ENSMUST00000205141 AA545190 lincRNA Interval_157707 chr8 72420802 72422146 + 0 NA promoter-TSS (ENSMUSG00000006276.10) protein_coding-promoter-TSS (ENSMUSG00000006276.10) -2 ENSMUSG00000110558.1 ENSMUSG00000110558 ENSMUST00000212189 Gm45779 TEC Interval_105238 chr3 84090713 84091754 + 0 NA intron (ENSMUSG00000033752.7, intron 7 of 7) protein_coding-intron (ENSMUSG00000033752.7, intron 7 of 7) -27781 ENSMUSG00000103261.1 ENSMUSG00000103261 ENSMUST00000192340 Gm36981 TEC Interval_59058 chr15 42674197 42676104 + 0 NA intron (ENSMUSG00000022309.9, intron 1 of 1) protein_coding-intron (ENSMUSG00000022309.9, intron 1 of 8) -1175 ENSMUSG00000097805.2 ENSMUSG00000097805 ENSMUST00000228544 Gm17473 antisense Interval_75496 chr17 67471819 67472130 + 0 NA Intergenic Intergenic -79633 ENSMUSG00000087829.1 ENSMUSG00000087829 ENSMUST00000157204 Gm22277 misc_RNA Interval_59040 chr15 41948576 41950173 + 0 NA TTS (ENSMUSG00000088469.1) snoRNA-TTS (ENSMUSG00000088469.1) 377 ENSMUSG00000088469.1 ENSMUSG00000088469 ENSMUST00000157844 Gm24751 snoRNA Interval_147187 chr7 64230786 64231145 + 0 NA intron (ENSMUSG00000030523.18, intron 17 of 26) protein_coding-intron (ENSMUSG00000030523.18, intron 17 of 26) -14059 ENSMUSG00000030523.18 ENSMUSG00000030523 ENSMUST00000206848 Trpm1 protein_coding Interval_35472 chr12 22937456 22937666 + 0 NA Intergenic Intergenic 22745 ENSMUSG00000113670.1 ENSMUSG00000113670 ENSMUST00000222206 Gm49686 transcribed_unprocessed_pseudogene Interval_160945 chr8 115902821 115903033 + 0 NA Intergenic Intergenic 69144 ENSMUSG00000110620.1 ENSMUSG00000110620 ENSMUST00000212988 Gm45733 lincRNA Interval_106987 chr3 102534650 102535418 + 0 NA Intergenic Intergenic 43692 ENSMUSG00000106121.1 ENSMUSG00000106121 ENSMUST00000197086 Gm42679 sense_intronic Interval_7157 chr1 127287846 127288144 + 0 NA intron (ENSMUSG00000036155.13, intron 2 of 10) protein_coding-intron (ENSMUSG00000036155.13, intron 2 of 17) -4887 ENSMUSG00000099471.1 ENSMUSG00000099471 ENSMUST00000170338 Gm8451 processed_pseudogene Interval_139115 chr6 95424738 95424947 + 0 NA Intergenic Intergenic -90865 ENSMUSG00000068180.13 ENSMUSG00000068180 ENSMUST00000171594 AY512915 lincRNA Interval_95892 chr2 118124830 118125314 + 0 NA exon (ENSMUSG00000040152.8, exon 22 of 22) protein_coding-exon (ENSMUSG00000040152.8, exon 22 of 22) -1025 ENSMUSG00000101859.1 ENSMUSG00000101859 ENSMUST00000190311 Gm29233 lincRNA Interval_171955 chr9 122931566 122931795 + 0 NA TTS (ENSMUSG00000057895.11) protein_coding-TTS (ENSMUSG00000057895.11) -4132 ENSMUSG00000111163.1 ENSMUSG00000111163 ENSMUST00000214730 Gm46136 transcribed_unprocessed_pseudogene Interval_63518 chr15 101695503 101696033 + 0 NA Intergenic Intergenic -1489 ENSMUSG00000058354.7 ENSMUSG00000058354 ENSMUST00000230205 Krt6a protein_coding Interval_148917 chr7 90034670 90035821 + 0 NA intron (ENSMUSG00000097585.2, intron 1 of 5) processed_transcript-intron (ENSMUSG00000097585.2, intron 7 of 8) 4674 ENSMUSG00000109245.1 ENSMUSG00000109245 ENSMUST00000208473 Gm44860 TEC Interval_18199 chr10 83648098 83649240 + 0 NA promoter-TSS (ENSMUSG00000020263.14) protein_coding-promoter-TSS (ENSMUSG00000020263.14) -10602 ENSMUSG00000112072.1 ENSMUSG00000112072 ENSMUST00000218849 Gm47244 processed_pseudogene Interval_61326 chr15 80854262 80855055 + 0 NA intron (ENSMUSG00000047888.10, intron 1 of 17) protein_coding-intron (ENSMUSG00000047888.10, intron 4 of 24) -68406 ENSMUSG00000047888.10 ENSMUSG00000047888 ENSMUST00000228525 Tnrc6b protein_coding Interval_69059 chr16 90358371 90359977 + 0 NA intron (ENSMUSG00000116849.1, intron 2 of 2) lincRNA-intron (ENSMUSG00000116989.1, intron 2 of 2) 3943 ENSMUSG00000116849.1 ENSMUSG00000116849 ENSMUST00000231427 Gm49710 lincRNA Interval_54698 chr14 73436515 73437330 + 0 NA Intergenic Intergenic -56171 ENSMUSG00000115530.1 ENSMUSG00000115530 ENSMUST00000226353 Gm4266 processed_pseudogene Interval_171998 chr9 123355328 123356287 + 0 NA Intergenic Intergenic -11147 ENSMUSG00000035202.8 ENSMUSG00000035202 ENSMUST00000215087 Lars2 protein_coding Interval_88500 chr2 5643714 5644480 + 0 NA intron (ENSMUSG00000039145.16, intron 1 of 1) protein_coding-intron (ENSMUSG00000039145.16, intron 1 of 10) 40526 ENSMUSG00000082013.1 ENSMUSG00000082013 ENSMUST00000117145 Gm13216 processed_pseudogene Interval_65698 chr16 25539836 25540087 + 0 NA Intergenic Intergenic -96688 ENSMUSG00000116828.1 ENSMUSG00000116828 ENSMUST00000232460 Gm18896 processed_pseudogene Interval_57044 chr15 5100203 5100500 + 0 NA exon (ENSMUSG00000041849.7, exon 4 of 4) protein_coding-exon (ENSMUSG00000041849.7, exon 4 of 4) 7804 ENSMUSG00000080720.2 ENSMUSG00000080720 ENSMUST00000121915 Gm16077 processed_pseudogene Interval_23673 chr11 24305050 24306303 + 0 NA Intergenic Intergenic -103052 ENSMUSG00000086117.1 ENSMUSG00000086117 ENSMUST00000149592 Gm12065 lincRNA Interval_75445 chr17 66577935 66578663 + 0 NA intron (ENSMUSG00000024105.3, intron 2 of 3) protein_coding-intron (ENSMUSG00000024105.3, intron 2 of 3) 16322 ENSMUSG00000024105.3 ENSMUSG00000024105 ENSMUST00000024914 Themis3 protein_coding Interval_57312 chr15 8687385 8687600 + 0 NA TTS (ENSMUSG00000005360.14) protein_coding-TTS (ENSMUSG00000005360.14) 22917 ENSMUSG00000005360.14 ENSMUSG00000005360 ENSMUST00000126747 Slc1a3 protein_coding Interval_174749 chrX 165088619 165089282 + 0 NA Intergenic Intergenic -84121 ENSMUSG00000079600.2 ENSMUSG00000079600 ENSMUST00000114890 Gm17604 protein_coding Interval_128858 chr5 115646058 115647005 + 0 NA TTS (ENSMUSG00000029518.15) protein_coding-TTS (ENSMUSG00000029518.15) 958 ENSMUSG00000099254.1 ENSMUSG00000099254 ENSMUST00000183566 Mir7030 miRNA Interval_83353 chr18 84526762 84527087 + 0 NA intron (ENSMUSG00000048410.17, intron 2 of 2) protein_coding-intron (ENSMUSG00000048410.17, intron 2 of 2) -91989 ENSMUSG00000048410.17 ENSMUSG00000048410 ENSMUST00000182297 Zfp407 protein_coding Interval_156517 chr8 49088112 49088519 + 0 NA Intergenic Intergenic 24436 ENSMUSG00000110606.1 ENSMUSG00000110606 ENSMUST00000212466 Gm45829 lincRNA Interval_37554 chr12 69843720 69844267 + 0 NA TTS (ENSMUSG00000034761.15) protein_coding-TTS (ENSMUSG00000034761.15) 24346 ENSMUSG00000113497.1 ENSMUSG00000113497 ENSMUST00000222163 Gm18030 processed_pseudogene Interval_76529 chr17 80792522 80792859 + 0 NA Intergenic Intergenic 64559 ENSMUSG00000054957.5 ENSMUSG00000054957 ENSMUST00000068277 Gm9959 pseudogene Interval_70381 chr17 9585039 9585923 + 0 NA intron (ENSMUSG00000117143.1, intron 2 of 2) lincRNA-intron (ENSMUSG00000117143.1, intron 2 of 2) 35790 ENSMUSG00000117143.1 ENSMUSG00000117143 ENSMUST00000232756 Gm49807 lincRNA Interval_42571 chr13 15570739 15571469 + 0 NA intron (ENSMUSG00000021318.15, intron 3 of 9) protein_coding-intron (ENSMUSG00000021318.15, intron 3 of 14) -78831 ENSMUSG00000113191.1 ENSMUSG00000113191 ENSMUST00000220835 Gm48343 processed_pseudogene Interval_156714 chr8 57532362 57532741 + 0 NA intron (ENSMUSG00000031608.13, intron 4 of 5) protein_coding-intron (ENSMUSG00000031608.13, intron 10 of 11) -11665 ENSMUSG00000109899.1 ENSMUSG00000109899 ENSMUST00000210821 Gm6012 processed_pseudogene Interval_109406 chr3 141867938 141868224 + 0 NA intron (ENSMUSG00000052430.15, intron 5 of 11) protein_coding-intron (ENSMUSG00000052430.15, intron 4 of 10) 63427 ENSMUSG00000052430.15 ENSMUSG00000052430 ENSMUST00000106230 Bmpr1b protein_coding Interval_81777 chr18 64611445 64612652 + 0 NA TTS (ENSMUSG00000118133.1) transcribed_processed_pseudogene-TTS (ENSMUSG00000118133.1) 1051 ENSMUSG00000118133.1 ENSMUSG00000118133 ENSMUST00000238142 Gm6978 transcribed_processed_pseudogene Interval_158610 chr8 84742036 84743818 + 0 NA intron (ENSMUSG00000001911.16, intron 2 of 9) protein_coding-intron (ENSMUSG00000001911.16, intron 2 of 8) 19920 ENSMUSG00000074203.4 ENSMUSG00000074203 ENSMUST00000098571 G430095P16Rik protein_coding Interval_148117 chr7 79330576 79331488 + 0 NA intron (ENSMUSG00000039202.12, intron 5 of 10) protein_coding-intron (ENSMUSG00000039202.12, intron 5 of 10) 21713 ENSMUSG00000089453.1 ENSMUSG00000089453 ENSMUST00000158828 Gm24224 misc_RNA Interval_124414 chr5 45689135 45689456 + 0 NA intron (ENSMUSG00000015880.13, intron 6 of 13) protein_coding-intron (ENSMUSG00000015880.13, intron 13 of 20) 11380 ENSMUSG00000015880.13 ENSMUSG00000015880 ENSMUST00000123396 Ncapg protein_coding Interval_122688 chr5 24668406 24668801 + 0 NA Intergenic Intergenic -17384 ENSMUSG00000028954.11 ENSMUSG00000028954 ENSMUST00000200337 Nub1 protein_coding Interval_151473 chr7 122929644 122930103 + 0 NA Intergenic Intergenic 40177 ENSMUSG00000108452.1 ENSMUSG00000108452 ENSMUST00000205998 4930413G21Rik TEC Interval_70786 chr17 14510976 14511348 + 0 NA Intergenic Intergenic 61591 ENSMUSG00000116801.1 ENSMUSG00000116801 ENSMUST00000232609 Gm38551 lincRNA Interval_169507 chr9 98613955 98614463 + 0 NA Intergenic Intergenic -12564 ENSMUSG00000032459.9 ENSMUSG00000032459 ENSMUST00000190150 Mrps22 protein_coding Interval_125595 chr5 72401184 72401783 + 0 NA intron (ENSMUSG00000005220.10, intron 4 of 20) protein_coding-intron (ENSMUSG00000005220.10, intron 5 of 21) -7961 ENSMUSG00000093644.1 ENSMUSG00000093644 ENSMUST00000177510 Gm19560 processed_pseudogene Interval_52697 chr14 48689655 48690586 + 0 NA intron (ENSMUSG00000098682.8, intron 1 of 3) lincRNA-intron (ENSMUSG00000098682.8, intron 1 of 4) 5861 ENSMUSG00000115194.1 ENSMUSG00000115194 ENSMUST00000226751 Gm48909 processed_pseudogene Interval_140041 chr6 113600288 113601134 + 0 NA promoter-TSS (ENSMUSG00000033963.16) protein_coding-promoter-TSS (ENSMUSG00000033963.16) 4 ENSMUSG00000033963.16 ENSMUSG00000033963 ENSMUST00000035870 Fancd2os protein_coding Interval_167249 chr9 66664187 66665017 + 0 NA Intergenic Intergenic -49127 ENSMUSG00000032373.15 ENSMUSG00000032373 ENSMUST00000134829 Car12 protein_coding Interval_152275 chr7 131312301 131312807 + 0 NA intron (ENSMUSG00000040205.8, intron 6 of 8) protein_coding-intron (ENSMUSG00000040205.8, intron 6 of 8) 9738 ENSMUSG00000040205.8 ENSMUSG00000040205 ENSMUST00000046611 Cuzd1 protein_coding Interval_44769 chr13 48436566 48437275 + 0 NA Intergenic Intergenic -28408 ENSMUSG00000114695.1 ENSMUSG00000114695 ENSMUST00000225569 Gm48648 lincRNA Interval_115525 chr4 100159145 100159577 + 0 NA intron (ENSMUSG00000035305.5, intron 1 of 8) protein_coding-intron (ENSMUSG00000035305.5, intron 1 of 8) 39740 ENSMUSG00000086385.1 ENSMUSG00000086385 ENSMUST00000134206 Gm12701 sense_intronic Interval_72407 chr17 29640955 29641335 + 0 NA intron (ENSMUSG00000098374.1, intron 7 of 27) protein_coding-intron (ENSMUSG00000090083.11, intron 7 of 7) 7627 ENSMUSG00000090083.11 ENSMUSG00000090083 ENSMUST00000172800 Rnf8 protein_coding Interval_162107 chr8 125183837 125185477 + 0 NA intron (ENSMUSG00000043051.17, intron 10 of 13) protein_coding-intron (ENSMUSG00000043051.17, intron 9 of 12) 42666 ENSMUSG00000086694.1 ENSMUSG00000086694 ENSMUST00000156666 Gm16237 antisense Interval_72496 chr17 30196489 30197179 + 0 NA promoter-TSS (ENSMUSG00000044477.12) protein_coding-promoter-TSS (ENSMUSG00000044477.12) 19359 ENSMUSG00000117974.1 ENSMUSG00000117974 ENSMUST00000236459 Tuba-rs1 transcribed_processed_pseudogene Interval_104882 chr3 77937651 77938558 + 0 NA Intergenic Intergenic -23280 ENSMUSG00000105026.1 ENSMUSG00000105026 ENSMUST00000196696 Gm18719 processed_pseudogene Interval_118962 chr4 134734020 134735214 + 0 NA Intergenic Intergenic 15490 ENSMUSG00000037295.7 ENSMUSG00000037295 ENSMUST00000140678 Ldlrap1 protein_coding Interval_88104 chr19 59165980 59167154 + 0 NA TTS (ENSMUSG00000006270.7) protein_coding-TTS (ENSMUSG00000006270.7) 413 ENSMUSG00000006270.7 ENSMUSG00000006270 ENSMUST00000173710 Vax1 protein_coding Interval_163482 chr9 21647107 21647891 + 0 NA intron (ENSMUSG00000032187.16, intron 12 of 33) protein_coding-intron (ENSMUSG00000032187.16, intron 12 of 33) -30414 ENSMUSG00000099192.1 ENSMUSG00000099192 ENSMUST00000184017 Gm27373 misc_RNA Interval_140547 chr6 119442017 119442483 + 0 NA intron (ENSMUSG00000030170.14, intron 3 of 4) protein_coding-intron (ENSMUSG00000030170.14, intron 3 of 4) -24775 ENSMUSG00000030168.13 ENSMUSG00000030168 ENSMUST00000189710 Adipor2 protein_coding Interval_3036 chr1 52456645 52457140 + 0 NA TTS (ENSMUSG00000002881.14) protein_coding-TTS (ENSMUSG00000002881.14) -12348 ENSMUSG00000065192.1 ENSMUSG00000065192 ENSMUST00000083258 Gm23460 snRNA Interval_42826 chr13 20090054 20091793 + 0 NA intron (ENSMUSG00000041112.17, intron 1 of 6) protein_coding-intron (ENSMUSG00000041112.17, intron 1 of 21) -95119 ENSMUSG00000050243.6 ENSMUSG00000050243 ENSMUST00000091762 Gm5446 processed_pseudogene Interval_116495 chr4 114685393 114685977 + 0 NA exon (ENSMUSG00000085870.1, exon 2 of 2) lincRNA-exon (ENSMUSG00000085870.1, exon 2 of 2) 4881 ENSMUSG00000085870.1 ENSMUSG00000085870 ENSMUST00000146346 Gm12829 lincRNA Interval_64673 chr16 14044534 14045449 + 0 NA intron (ENSMUSG00000044117.12, intron 1 of 3) protein_coding-intron (ENSMUSG00000044117.12, intron 1 of 5) -6130 ENSMUSG00000082277.2 ENSMUSG00000082277 ENSMUST00000119880 Gm15807 processed_pseudogene Interval_29014 chr11 79915092 79917121 + 0 NA Intergenic Intergenic 10125 ENSMUSG00000082252.1 ENSMUSG00000082252 ENSMUST00000122438 Gm11204 processed_pseudogene Interval_3173 chr1 54438493 54440176 + 0 NA promoter-TSS (ENSMUSG00000041303.7) protein_coding-promoter-TSS (ENSMUSG00000041303.7) -15280 ENSMUSG00000041303.7 ENSMUSG00000041303 ENSMUST00000189906 Gtf3c3 protein_coding Interval_77742 chr17 94829155 94829579 + 0 NA intron (ENSMUSG00000066057.7, intron 1 of 4) processed_transcript-intron (ENSMUSG00000066057.7, intron 1 of 3) 5431 ENSMUSG00000066057.7 ENSMUSG00000066057 ENSMUST00000234446 Gm1976 processed_transcript Interval_134523 chr6 29322325 29322561 + 0 NA TTS (ENSMUSG00000090692.1) antisense-TTS (ENSMUSG00000090692.1) 763 ENSMUSG00000090692.1 ENSMUSG00000090692 ENSMUST00000171782 Gm17172 antisense Interval_124977 chr5 62938787 62939278 + 0 NA Intergenic Intergenic 127358 ENSMUSG00000090326.2 ENSMUSG00000090326 ENSMUST00000170704 Dthd1 protein_coding Interval_25093 chr11 43810987 43811191 + 0 NA intron (ENSMUSG00000050541.14, intron 1 of 1) protein_coding-intron (ENSMUSG00000050541.14, intron 4 of 4) 25243 ENSMUSG00000050541.14 ENSMUSG00000050541 ENSMUST00000139906 Adra1b protein_coding Interval_55617 chr14 96080960 96081518 + 0 NA Intergenic Intergenic -98539 ENSMUSG00000115603.1 ENSMUSG00000115603 ENSMUST00000226824 Gm19099 processed_pseudogene Interval_173440 chrX 93674606 93675688 + 0 NA promoter-TSS (ENSMUSG00000035246.16) protein_coding-promoter-TSS (ENSMUSG00000035246.16) 36533 ENSMUSG00000087255.2 ENSMUSG00000087255 ENSMUST00000121255 Gm6985 processed_pseudogene Interval_138287 chr6 86928511 86929152 + 0 NA intron (ENSMUSG00000057230.14, intron 3 of 3) protein_coding-intron (ENSMUSG00000057230.14, intron 2 of 19) -32810 ENSMUSG00000107576.1 ENSMUSG00000107576 ENSMUST00000204381 Gm44093 TEC Interval_26161 chr11 54825796 54826024 + 0 NA TTS (ENSMUSG00000020268.14) protein_coding-TTS (ENSMUSG00000020268.14) -3801 ENSMUSG00000088231.1 ENSMUSG00000088231 ENSMUST00000157606 Gm25426 snRNA Interval_69608 chr16 94588149 94588801 + 0 NA intron (ENSMUSG00000022897.15, intron 1 of 5) protein_coding-intron (ENSMUSG00000022897.15, intron 1 of 11) 17568 ENSMUSG00000022897.15 ENSMUSG00000022897 ENSMUST00000134383 Dyrk1a protein_coding Interval_128689 chr5 114722418 114722986 + 0 NA TTS (ENSMUSG00000002486.15) protein_coding-TTS (ENSMUSG00000002486.15) 3018 ENSMUSG00000002486.15 ENSMUSG00000002486 ENSMUST00000202252 Tchp protein_coding Interval_48217 chr13 97237868 97238162 + 0 NA Intergenic Intergenic -3090 ENSMUSG00000041773.8 ENSMUSG00000041773 ENSMUST00000041623 Enc1 protein_coding Interval_6773 chr1 119397835 119399425 + 0 NA Intergenic Intergenic 23618 ENSMUSG00000037035.5 ENSMUSG00000037035 ENSMUST00000038765 Inhbb protein_coding Interval_51696 chr14 31472447 31473502 + 0 NA TTS (ENSMUSG00000021891.8) protein_coding-TTS (ENSMUSG00000021891.8) -13749 ENSMUSG00000115283.1 ENSMUSG00000115283 ENSMUST00000227978 Gm49252 processed_pseudogene Interval_164456 chr9 37145186 37147551 + 0 NA promoter-TSS (ENSMUSG00000035934.16) protein_coding-promoter-TSS (ENSMUSG00000035934.16) -553 ENSMUSG00000035934.16 ENSMUSG00000035934 ENSMUST00000215175 Pknox2 protein_coding Interval_122674 chr5 24598425 24599350 + 0 NA promoter-TSS (ENSMUSG00000028949.13) protein_coding-promoter-TSS (ENSMUSG00000028949.13) 6773 ENSMUSG00000076387.1 ENSMUSG00000076387 ENSMUST00000102432 Mir671 miRNA Interval_104381 chr3 64889720 64889910 + 0 NA Intergenic Intergenic 4781 ENSMUSG00000088824.1 ENSMUSG00000088824 ENSMUST00000158199 Gm25222 snoRNA Interval_79297 chr18 30240841 30241160 + 0 NA Intergenic Intergenic -26249 ENSMUSG00000117465.1 ENSMUSG00000117465 ENSMUST00000234467 Gm49980 lincRNA Interval_45462 chr13 55274203 55274623 + 0 NA intron (ENSMUSG00000021488.8, intron 7 of 20) protein_coding-intron (ENSMUSG00000021488.8, intron 9 of 22) -20012 ENSMUSG00000114359.1 ENSMUSG00000114359 ENSMUST00000224833 Gm47816 processed_pseudogene Interval_102291 chr3 20813401 20813662 + 0 NA Intergenic Intergenic -6090 ENSMUSG00000102807.1 ENSMUSG00000102807 ENSMUST00000194795 Gm37480 TEC Interval_169877 chr9 102692743 102693473 + 0 NA intron (ENSMUSG00000099491.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000099491.1, intron 1 of 1) 223 ENSMUSG00000099491.1 ENSMUSG00000099491 ENSMUST00000185478 4930533D04Rik lincRNA Interval_100990 chr2 173977742 173977938 + 0 NA Intergenic Intergenic 6851 ENSMUSG00000081700.1 ENSMUSG00000081700 ENSMUST00000120437 Atp5k-ps2 processed_pseudogene Interval_811 chr1 11587426 11589283 + 0 NA intron (ENSMUSG00000057715.13, intron 1 of 2) protein_coding-intron (ENSMUSG00000057715.13, intron 5 of 13) 9048 ENSMUSG00000057715.13 ENSMUSG00000057715 ENSMUST00000191437 A830018L16Rik protein_coding Interval_7495 chr1 131841686 131842006 + 0 NA promoter-TSS (ENSMUSG00000013275.9) protein_coding-promoter-TSS (ENSMUSG00000013275.9) -994 ENSMUSG00000013275.9 ENSMUSG00000013275 ENSMUST00000146360 Slc41a1 protein_coding Interval_37618 chr12 70367531 70368203 + 0 NA Intergenic Intergenic 20405 ENSMUSG00000112945.1 ENSMUSG00000112945 ENSMUST00000223521 Gm32151 bidirectional_promoter_lncRNA Interval_134944 chr6 33997766 33999095 + 0 NA Intergenic Intergenic -6019 ENSMUSG00000087441.1 ENSMUSG00000087441 ENSMUST00000155496 Gm13853 lincRNA Interval_29039 chr11 80020963 80021848 + 0 NA intron (ENSMUSG00000017548.15, intron 8 of 14) protein_coding-intron (ENSMUSG00000017548.15, intron 9 of 15) 28299 ENSMUSG00000017548.15 ENSMUSG00000017548 ENSMUST00000144188 Suz12 protein_coding Interval_153590 chr8 3567181 3568739 + 0 NA promoter-TSS (ENSMUSG00000065952.13) protein_coding-promoter-TSS (ENSMUSG00000065952.13) -35 ENSMUSG00000065952.13 ENSMUSG00000065952 ENSMUST00000086479 Rps23rg1 protein_coding Interval_160799 chr8 112408158 112408335 + 0 NA Intergenic Intergenic 161329 ENSMUSG00000098075.1 ENSMUSG00000098075 ENSMUST00000182027 Gm26994 antisense Interval_5241 chr1 86669578 86671130 + 0 NA exon (ENSMUSG00000026241.5, exon 1 of 3) protein_coding-exon (ENSMUSG00000026241.5, exon 1 of 3) 217 ENSMUSG00000026241.5 ENSMUSG00000026241 ENSMUST00000027449 Nppc protein_coding Interval_159220 chr8 91867500 91867788 + 0 NA intron (ENSMUSG00000099664.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000099664.1, intron 1 of 1) 1773 ENSMUSG00000099664.1 ENSMUSG00000099664 ENSMUST00000191594 Gm28511 lincRNA Interval_94887 chr2 100818771 100819665 + 0 NA Intergenic Intergenic -191175 ENSMUSG00000095203.1 ENSMUSG00000095203 ENSMUST00000118584 Gm13810 processed_pseudogene Interval_164392 chr9 36716735 36717049 + 0 NA intron (ENSMUSG00000032113.16, intron 3 of 5) protein_coding-intron (ENSMUSG00000032113.16, intron 7 of 12) 5853 ENSMUSG00000032113.16 ENSMUSG00000032113 ENSMUST00000172742 Chek1 protein_coding Interval_147507 chr7 67831697 67832000 + 0 NA TTS (ENSMUSG00000109193.1) lincRNA-TTS (ENSMUSG00000109193.1) 12598 ENSMUSG00000109464.1 ENSMUSG00000109464 ENSMUST00000208898 Gm34350 lincRNA Interval_92930 chr2 68756546 68757421 + 0 NA Intergenic Intergenic 40692 ENSMUSG00000079324.11 ENSMUSG00000079324 ENSMUST00000135023 4932414N04Rik protein_coding Interval_71269 chr17 21749922 21750181 + 0 NA intron (ENSMUSG00000061544.13, intron 5 of 5) protein_coding-intron (ENSMUSG00000061544.13, intron 5 of 5) 16327 ENSMUSG00000061544.13 ENSMUSG00000061544 ENSMUST00000182603 Zfp229 protein_coding Interval_95357 chr2 106895150 106896760 + 0 NA Intergenic Intergenic -20816 ENSMUSG00000085530.1 ENSMUSG00000085530 ENSMUST00000137252 Gm13901 processed_pseudogene Interval_95819 chr2 116907516 116908612 + 0 NA intron (ENSMUSG00000085316.1, intron 2 of 3) lincRNA-intron (ENSMUSG00000085316.1, intron 1 of 2) 7870 ENSMUSG00000085316.1 ENSMUSG00000085316 ENSMUST00000155323 D330050G23Rik lincRNA Interval_133641 chr6 7936398 7936723 + 0 NA Intergenic Intergenic 46823 ENSMUSG00000096403.2 ENSMUSG00000096403 ENSMUST00000178598 Rnps1-ps processed_pseudogene Interval_117009 chr4 118991886 118992467 + 0 NA intron (ENSMUSG00000087238.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000087238.1, intron 1 of 1) 5022 ENSMUSG00000087238.1 ENSMUSG00000087238 ENSMUST00000137353 Gm12865 lincRNA Interval_58965 chr15 41101269 41101607 + 0 NA exon (ENSMUSG00000022306.9, exon 8 of 8) protein_coding-exon (ENSMUSG00000022306.9, exon 8 of 8) -72049 ENSMUSG00000048559.5 ENSMUSG00000048559 ENSMUST00000060066 4930555K19Rik processed_pseudogene Interval_158809 chr8 86803281 86803848 + 0 NA Intergenic Intergenic 48856 ENSMUSG00000031652.11 ENSMUSG00000031652 ENSMUST00000210029 N4bp1 protein_coding Interval_141087 chr6 124897020 124897543 + 0 NA Intergenic Intergenic -9082 ENSMUSG00000023274.14 ENSMUSG00000023274 ENSMUST00000130378 Cd4 protein_coding Interval_35347 chr12 20913895 20915537 + 0 NA intron (ENSMUSG00000069755.5, intron 3 of 5) transcribed_unprocessed_pseudogene-intron (ENSMUSG00000085642.8, intron 1 of 1) 6546 ENSMUSG00000069755.5 ENSMUSG00000069755 ENSMUST00000208744 Zfp125 transcribed_unprocessed_pseudogene Interval_10524 chr1 171465502 171466217 + 0 NA Intergenic Intergenic 3009 ENSMUSG00000038235.4 ENSMUSG00000038235 ENSMUST00000155913 F11r protein_coding Interval_5249 chr1 86761869 86762816 + 0 NA intron (ENSMUSG00000053333.15, intron 5 of 20) protein_coding-intron (ENSMUSG00000053333.15, intron 5 of 20) 3023 ENSMUSG00000100225.1 ENSMUSG00000100225 ENSMUST00000190273 Gm29097 processed_pseudogene Interval_159340 chr8 93892471 93892910 + 0 NA intron (ENSMUSG00000031748.16, intron 2 of 7) protein_coding-intron (ENSMUSG00000031748.16, intron 2 of 8) 41246 ENSMUSG00000093005.1 ENSMUSG00000093005 ENSMUST00000175264 Gm24159 miRNA Interval_100553 chr2 170101227 170102160 + 0 NA Intergenic Intergenic 46410 ENSMUSG00000052056.14 ENSMUSG00000052056 ENSMUST00000149318 Zfp217 protein_coding Interval_104945 chr3 79202280 79203286 + 0 NA intron (ENSMUSG00000062232.14, intron 3 of 29) protein_coding-intron (ENSMUSG00000062232.14, intron 3 of 29) 6409 ENSMUSG00000064693.1 ENSMUSG00000064693 ENSMUST00000082759 Gm24150 snRNA Interval_123366 chr5 31858408 31859708 + 0 NA intron (ENSMUSG00000052139.18, intron 6 of 11) protein_coding-intron (ENSMUSG00000052139.18, intron 8 of 13) -10988 ENSMUSG00000088514.1 ENSMUSG00000088514 ENSMUST00000157889 Gm24436 misc_RNA Interval_106916 chr3 101844770 101845085 + 0 NA intron (ENSMUSG00000044313.13, intron 1 of 6) protein_coding-intron (ENSMUSG00000044313.13, intron 1 of 6) 4032 ENSMUSG00000044313.13 ENSMUSG00000044313 ENSMUST00000118411 Mab21l3 protein_coding Interval_100092 chr2 167035961 167036612 + 0 NA exon (ENSMUSG00000039501.14, exon 14 of 14) protein_coding-exon (ENSMUSG00000039501.14, exon 14 of 14) 20976 ENSMUSG00000017999.16 ENSMUSG00000017999 ENSMUST00000127468 Ddx27 protein_coding Interval_17546 chr10 77648824 77650304 + 0 NA Intergenic Intergenic 3795 ENSMUSG00000112007.1 ENSMUSG00000112007 ENSMUST00000219972 Gm18119 processed_pseudogene Interval_36271 chr12 40507774 40508640 + 0 NA intron (ENSMUSG00000035954.10, intron 1 of 5) protein_coding-intron (ENSMUSG00000035954.10, intron 1 of 52) 62124 ENSMUSG00000035954.10 ENSMUSG00000035954 ENSMUST00000220850 Dock4 protein_coding Interval_13703 chr10 21193140 21194081 + 0 NA Intergenic Intergenic -4428 ENSMUSG00000110967.1 ENSMUSG00000110967 ENSMUST00000213692 Gm40608 lincRNA Interval_112452 chr4 41356954 41357782 + 0 NA intron (ENSMUSG00000028437.14, intron 1 of 2) protein_coding-intron (ENSMUSG00000028437.14, intron 1 of 6) -11417 ENSMUSG00000088528.1 ENSMUSG00000088528 ENSMUST00000157903 Gm26084 snRNA Interval_30766 chr11 96344509 96344948 + 0 NA TTS (ENSMUSG00000048763.11) protein_coding-TTS (ENSMUSG00000048763.11) -2620 ENSMUSG00000075589.3 ENSMUSG00000075589 ENSMUST00000130733 Gm11536 antisense Interval_38972 chr12 84201676 84203964 + 0 NA intron (ENSMUSG00000042507.15, intron 1 of 12) protein_coding-intron (ENSMUSG00000042507.15, intron 1 of 12) 6851 ENSMUSG00000113052.1 ENSMUSG00000113052 ENSMUST00000223261 Gm31513 antisense Interval_63871 chr16 4120294 4120735 + 0 NA intron (ENSMUSG00000022521.10, intron 3 of 4) protein_coding-intron (ENSMUSG00000022521.10, intron 11 of 30) -25870 ENSMUSG00000022521.10 ENSMUSG00000022521 ENSMUST00000205685 Crebbp protein_coding Interval_67675 chr16 55884221 55884891 + 0 NA promoter-TSS (ENSMUSG00000116919.1) processed_pseudogene-promoter-TSS (ENSMUSG00000116919.1) -65 ENSMUSG00000116919.1 ENSMUSG00000116919 ENSMUST00000232524 Gm17809 processed_pseudogene Interval_25980 chr11 53299580 53301647 + 0 NA promoter-TSS (ENSMUSG00000020361.13) protein_coding-promoter-TSS (ENSMUSG00000020361.13) -202 ENSMUSG00000020361.13 ENSMUSG00000020361 ENSMUST00000151854 Hspa4 protein_coding Interval_122801 chr5 25626551 25626848 + 0 NA Intergenic Intergenic -33110 ENSMUSG00000106144.1 ENSMUSG00000106144 ENSMUST00000181398 Gm43972 lincRNA Interval_54931 chr14 76312777 76314110 + 0 NA Intergenic Intergenic 61986 ENSMUSG00000115625.1 ENSMUSG00000115625 ENSMUST00000227933 2900040C04Rik lincRNA Interval_64633 chr16 13770815 13772370 + 0 NA Intergenic Intergenic -9116 ENSMUSG00000022682.8 ENSMUSG00000022682 ENSMUST00000023363 Rrn3 protein_coding Interval_111067 chr4 11594608 11594923 + 0 NA intron (ENSMUSG00000078773.11, intron 2 of 2) protein_coding-intron (ENSMUSG00000078773.11, intron 4 of 14) 15100 ENSMUSG00000094595.1 ENSMUSG00000094595 ENSMUST00000180239 Fsbp protein_coding Interval_107447 chr3 107768123 107768509 + 0 NA Intergenic Intergenic -13540 ENSMUSG00000106531.1 ENSMUSG00000106531 ENSMUST00000200491 Gm43233 processed_pseudogene Interval_159806 chr8 103876446 103876658 + 0 NA Intergenic Intergenic -194597 ENSMUSG00000110019.1 ENSMUSG00000110019 ENSMUST00000211125 Gm8748 processed_pseudogene Interval_92093 chr2 53144946 53145139 + 0 NA TTS (ENSMUSG00000061136.16) protein_coding-TTS (ENSMUSG00000061136.16) 46145 ENSMUSG00000061136.16 ENSMUSG00000061136 ENSMUST00000132031 Prpf40a protein_coding Interval_67443 chr16 48665401 48665616 + 0 NA Intergenic Intergenic 84940 ENSMUSG00000116640.1 ENSMUSG00000116640 ENSMUST00000231404 Gm8670 processed_pseudogene Interval_52408 chr14 45690423 45691553 + 0 NA Intergenic Intergenic -13548 ENSMUSG00000082475.2 ENSMUSG00000082475 ENSMUST00000117730 Gm7206 processed_pseudogene Interval_73663 chr17 42560486 42560735 + 0 NA intron (ENSMUSG00000043972.8, intron 6 of 6) protein_coding-intron (ENSMUSG00000043972.8, intron 6 of 6) 50785 ENSMUSG00000043972.8 ENSMUSG00000043972 ENSMUST00000068355 Opn5 protein_coding Interval_106238 chr3 94837121 94838824 + 0 NA intron (ENSMUSG00000038902.14, intron 1 of 6) protein_coding-intron (ENSMUSG00000038902.14, intron 1 of 18) 4995 ENSMUSG00000084058.1 ENSMUSG00000084058 ENSMUST00000121556 Gm15263 processed_pseudogene Interval_64761 chr16 15534312 15534898 + 0 NA Intergenic Intergenic -52760 ENSMUSG00000116386.1 ENSMUSG00000116386 ENSMUST00000229197 Gm49538 processed_pseudogene Interval_146273 chr7 45082339 45083680 + 0 NA TTS (ENSMUSG00000019539.11) protein_coding-TTS (ENSMUSG00000019539.11) 5598 ENSMUSG00000019539.11 ENSMUSG00000019539 ENSMUST00000210355 Rcn3 protein_coding Interval_145520 chr7 35342800 35343034 + 0 NA intron (ENSMUSG00000030494.13, intron 1 of 15) protein_coding-intron (ENSMUSG00000030494.13, intron 1 of 14) -39648 ENSMUSG00000030494.13 ENSMUSG00000030494 ENSMUST00000187997 Rhpn2 protein_coding Interval_90675 chr2 31815237 31816189 + 0 NA exon (ENSMUSG00000026841.7, exon 7 of 7) protein_coding-exon (ENSMUSG00000026841.7, exon 7 of 7) -5133 ENSMUSG00000043102.2 ENSMUSG00000043102 ENSMUST00000057407 Qrfp protein_coding Interval_173841 chrX 105908641 105908990 + 0 NA intron (ENSMUSG00000031229.16, intron 1 of 6) protein_coding-intron (ENSMUSG00000031229.16, intron 1 of 5) -33510 ENSMUSG00000031229.16 ENSMUSG00000031229 ENSMUST00000126345 Atrx protein_coding Interval_149707 chr7 100816208 100817763 + 0 NA intron (ENSMUSG00000029461.17, intron 3 of 7) protein_coding-intron (ENSMUSG00000029461.17, intron 4 of 8) 5633 ENSMUSG00000109109.1 ENSMUSG00000109109 ENSMUST00000208745 Gm44953 TEC Interval_134788 chr6 31544341 31544635 + 0 NA intron (ENSMUSG00000025608.9, intron 1 of 7) protein_coding-intron (ENSMUSG00000025608.9, intron 1 of 7) -20177 ENSMUSG00000025608.9 ENSMUSG00000025608 ENSMUST00000136877 Podxl protein_coding Interval_49096 chr13 107954600 107956430 + 0 NA Intergenic Intergenic -40770 ENSMUSG00000114627.1 ENSMUSG00000114627 ENSMUST00000224800 B230220B15Rik lincRNA Interval_98667 chr2 154086840 154088153 + 0 NA promoter-TSS (ENSMUSG00000081013.1) processed_pseudogene-promoter-TSS (ENSMUSG00000081013.1) -82 ENSMUSG00000081013.1 ENSMUSG00000081013 ENSMUST00000119537 Gm14497 processed_pseudogene Interval_76102 chr17 74986850 74987297 + 0 NA Intergenic Intergenic -18495 ENSMUSG00000001870.16 ENSMUSG00000001870 ENSMUST00000135750 Ltbp1 protein_coding Interval_105304 chr3 84725871 84726138 + 0 NA intron (ENSMUSG00000102805.5, intron 3 of 9) protein_coding-intron (ENSMUSG00000102805.5, intron 3 of 9) 59794 ENSMUSG00000056498.13 ENSMUSG00000056498 ENSMUST00000128344 Tmem154 protein_coding Interval_101426 chr2 181306790 181307825 + 0 NA exon (ENSMUSG00000027581.12, exon 4 of 5) protein_coding-exon (ENSMUSG00000027581.12, exon 4 of 5) 7193 ENSMUSG00000027581.12 ENSMUSG00000027581 ENSMUST00000103045 Stmn3 protein_coding Interval_102100 chr3 17347021 17347288 + 0 NA Intergenic Intergenic -12729 ENSMUSG00000104411.1 ENSMUSG00000104411 ENSMUST00000191898 Gm30340 lincRNA Interval_53699 chr14 60974642 60975064 + 0 NA intron (ENSMUSG00000060548.13, intron 5 of 5) protein_coding-intron (ENSMUSG00000060548.13, intron 5 of 9) 63038 ENSMUSG00000060548.13 ENSMUSG00000060548 ENSMUST00000225730 Tnfrsf19 protein_coding Interval_146059 chr7 43601280 43602857 + 0 NA Intergenic Intergenic -5141 ENSMUSG00000055102.15 ENSMUSG00000055102 ENSMUST00000116324 Zfp819 protein_coding Interval_169838 chr9 102394172 102394649 + 0 NA Intergenic Intergenic 21292 ENSMUSG00000088138.1 ENSMUSG00000088138 ENSMUST00000157513 Gm22894 snRNA Interval_163495 chr9 21715113 21715648 + 0 NA Intergenic Intergenic 8070 ENSMUSG00000097155.1 ENSMUSG00000097155 ENSMUST00000181400 Gm26511 lincRNA Interval_145797 chr7 38816053 38816346 + 0 NA TTS (ENSMUSG00000101470.1) unprocessed_pseudogene-TTS (ENSMUSG00000101470.1) 4562 ENSMUSG00000101470.1 ENSMUSG00000101470 ENSMUST00000185932 Gm21129 unprocessed_pseudogene Interval_85920 chr19 33227135 33227457 + 0 NA intron (ENSMUSG00000071573.14, intron 2 of 4) polymorphic_pseudogene-intron (ENSMUSG00000071573.14, intron 4 of 6) 70184 ENSMUSG00000106278.1 ENSMUSG00000106278 ENSMUST00000199287 Mir3970 miRNA Interval_9231 chr1 155272674 155272861 + 0 NA Intergenic Intergenic 19260 ENSMUSG00000026469.14 ENSMUSG00000026469 ENSMUST00000143529 Xpr1 protein_coding Interval_44484 chr13 45294783 45294968 + 0 NA exon (ENSMUSG00000088203.1, exon 1 of 1) misc_RNA-exon (ENSMUSG00000088203.1, exon 1 of 1) 121 ENSMUSG00000088203.1 ENSMUSG00000088203 ENSMUST00000157578 Gm23755 misc_RNA Interval_3549 chr1 59508118 59509291 + 0 NA Intergenic Intergenic -16099 ENSMUSG00000097819.1 ENSMUSG00000097819 ENSMUST00000180778 Gm26813 lincRNA Interval_3554 chr1 59540656 59541912 + 0 NA TTS (ENSMUSG00000099811.6) antisense-TTS (ENSMUSG00000099811.6) -4055 ENSMUSG00000101409.1 ENSMUSG00000101409 ENSMUST00000186973 1700122D07Rik antisense Interval_5914 chr1 93197326 93198402 + 0 NA intron (ENSMUSG00000084989.3, intron 15 of 31) protein_coding-intron (ENSMUSG00000084989.3, intron 15 of 31) 29139 ENSMUSG00000084989.3 ENSMUSG00000084989 ENSMUST00000138595 Crocc2 protein_coding Interval_171573 chr9 119279446 119279977 + 0 NA intron (ENSMUSG00000036737.12, intron 5 of 18) protein_coding-intron (ENSMUSG00000036737.12, intron 4 of 17) -14939 ENSMUSG00000036737.12 ENSMUSG00000036737 ENSMUST00000143728 Oxsr1 protein_coding Interval_144077 chr7 19328624 19328865 + 0 NA intron (ENSMUSG00000108854.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000108854.1, intron 1 of 1) -4385 ENSMUSG00000109366.1 ENSMUSG00000109366 ENSMUST00000207382 Gm44698 lincRNA Interval_104457 chr3 65938244 65938688 + 0 NA Intergenic Intergenic -4558 ENSMUSG00000102566.1 ENSMUSG00000102566 ENSMUST00000194475 Gm37037 processed_pseudogene Interval_13397 chr10 17769760 17770401 + 0 NA Intergenic Intergenic 25248 ENSMUSG00000093672.2 ENSMUSG00000093672 ENSMUST00000176132 Gm20655 antisense Interval_100346 chr2 168553274 168554169 + 0 NA intron (ENSMUSG00000027544.16, intron 3 of 6) protein_coding-intron (ENSMUSG00000027544.16, intron 3 of 6) 47934 ENSMUSG00000027544.16 ENSMUSG00000027544 ENSMUST00000138546 Nfatc2 protein_coding Interval_46719 chr13 69610780 69612410 + 0 NA promoter-TSS (ENSMUSG00000021595.18) protein_coding-promoter-TSS (ENSMUSG00000021595.18) -454 ENSMUSG00000021595.18 ENSMUSG00000021595 ENSMUST00000136891 Nsun2 protein_coding Interval_62166 chr15 88468966 88469499 + 0 NA Intergenic Intergenic -131070 ENSMUSG00000054117.8 ENSMUSG00000054117 ENSMUST00000066949 Zdhhc25 protein_coding Interval_18493 chr10 86727446 86728106 + 0 NA intron (ENSMUSG00000044937.15, intron 3 of 4) protein_coding-intron (ENSMUSG00000044937.15, intron 4 of 15) 4612 ENSMUSG00000056366.5 ENSMUSG00000056366 ENSMUST00000070435 Fabp3-ps1 processed_pseudogene Interval_18070 chr10 82082760 82083956 + 0 NA promoter-TSS (ENSMUSG00000112160.1) protein_coding-promoter-TSS (ENSMUSG00000112160.1) 5 ENSMUSG00000112160.1 ENSMUSG00000112160 ENSMUST00000220287 BC024063 protein_coding Interval_5651 chr1 90564861 90565443 + 0 NA Intergenic Intergenic -38324 ENSMUSG00000034432.11 ENSMUSG00000034432 ENSMUST00000186882 Cops8 protein_coding Interval_34668 chr12 8511032 8511411 + 0 NA promoter-TSS (ENSMUSG00000112276.1) antisense-promoter-TSS (ENSMUSG00000112276.1) 20 ENSMUSG00000112276.1 ENSMUSG00000112276 ENSMUST00000218759 5033421B08Rik antisense Interval_73062 chr17 34545851 34547117 + 0 NA intron (ENSMUSG00000061728.5, intron 1 of 8) unprocessed_pseudogene-intron (ENSMUSG00000061728.5, intron 1 of 8) 1167 ENSMUSG00000061728.5 ENSMUSG00000061728 ENSMUST00000023469 Btnl7-ps unprocessed_pseudogene Interval_53414 chr14 57132862 57134010 + 0 NA promoter-TSS (ENSMUSG00000040055.9) protein_coding-promoter-TSS (ENSMUSG00000040055.9) -8215 ENSMUSG00000040055.9 ENSMUSG00000040055 ENSMUST00000162931 Gjb6 protein_coding Interval_118926 chr4 134494077 134495783 + 0 NA TTS (ENSMUSG00000083001.1) processed_pseudogene-TTS (ENSMUSG00000083001.1) 1708 ENSMUSG00000083001.1 ENSMUSG00000083001 ENSMUST00000117209 Gm13250 processed_pseudogene Interval_167654 chr9 71601864 71602298 + 0 NA Intergenic Intergenic -1941 ENSMUSG00000111815.1 ENSMUSG00000111815 ENSMUST00000216090 Gm6018 processed_pseudogene Interval_17345 chr10 76010896 76011351 + 0 NA Intergenic Intergenic 2197 ENSMUSG00000098817.1 ENSMUSG00000098817 ENSMUST00000184957 Mir6409 miRNA Interval_160768 chr8 112045143 112046434 + 0 NA Intergenic Intergenic -16717 ENSMUSG00000065700.1 ENSMUSG00000065700 ENSMUST00000083766 Gm22827 snRNA Interval_9915 chr1 164061151 164061561 + 0 NA promoter-TSS (ENSMUSG00000026581.14) protein_coding-promoter-TSS (ENSMUSG00000026581.14) -7606 ENSMUSG00000026581.14 ENSMUSG00000026581 ENSMUST00000195358 Sell protein_coding Interval_63505 chr15 101508492 101508863 + 0 NA intron (ENSMUSG00000116188.2, intron 2 of 3) processed_pseudogene-intron (ENSMUSG00000116188.2, intron 2 of 3) 2586 ENSMUSG00000116188.2 ENSMUSG00000116188 ENSMUST00000230835 Gm49424 processed_pseudogene Interval_142579 chr6 143494143 143494405 + 0 NA Intergenic Intergenic -28877 ENSMUSG00000077241.1 ENSMUSG00000077241 ENSMUST00000104053 Gm23272 snoRNA Interval_30973 chr11 97531708 97533321 + 0 NA intron (ENSMUSG00000038453.17, intron 10 of 18) protein_coding-intron (ENSMUSG00000038453.17, intron 10 of 17) -10619 ENSMUSG00000087042.1 ENSMUSG00000087042 ENSMUST00000134289 Gm11611 sense_intronic Interval_102439 chr3 26152711 26154046 + 0 NA promoter-TSS (ENSMUSG00000063887.13) protein_coding-promoter-TSS (ENSMUSG00000063887.13) -178573 ENSMUSG00000074664.3 ENSMUSG00000074664 ENSMUST00000195446 A830092H15Rik antisense Interval_32718 chr11 109955209 109955616 + 0 NA intron (ENSMUSG00000020620.14, intron 18 of 37) protein_coding-intron (ENSMUSG00000020620.14, intron 19 of 38) 19096 ENSMUSG00000085629.1 ENSMUSG00000085629 ENSMUST00000149226 Gm11697 antisense Interval_169666 chr9 99994196 99996215 + 0 NA Intergenic Intergenic -28443 ENSMUSG00000101584.2 ENSMUSG00000101584 ENSMUST00000215896 4930519F24Rik lincRNA Interval_162503 chr9 3381872 3382193 + 0 NA intron (ENSMUSG00000025899.14, intron 1 of 2) protein_coding-intron (ENSMUSG00000025899.14, intron 10 of 11) 2825 ENSMUSG00000025899.14 ENSMUSG00000025899 ENSMUST00000212955 Alkbh8 protein_coding Interval_149746 chr7 101101152 101101418 + 0 NA intron (ENSMUSG00000030691.15, intron 1 of 6) protein_coding-intron (ENSMUSG00000030691.15, intron 1 of 6) -39810 ENSMUSG00000109171.1 ENSMUSG00000109171 ENSMUST00000207053 Gm5735 processed_pseudogene Interval_79408 chr18 31715436 31715708 + 0 NA intron (ENSMUSG00000024260.14, intron 19 of 20) protein_coding-intron (ENSMUSG00000024260.14, intron 19 of 20) -23143 ENSMUSG00000117533.1 ENSMUSG00000117533 ENSMUST00000234849 Gm50060 processed_pseudogene Interval_11068 chr1 179136428 179137369 + 0 NA intron (ENSMUSG00000055067.15, intron 5 of 11) protein_coding-intron (ENSMUSG00000055067.15, intron 2 of 8) -219284 ENSMUSG00000089713.1 ENSMUSG00000089713 ENSMUST00000162545 Gm16564 antisense Interval_124759 chr5 53700196 53700933 + 0 NA intron (ENSMUSG00000029193.7, intron 4 of 4) protein_coding-intron (ENSMUSG00000029193.7, intron 4 of 4) 6996 ENSMUSG00000029193.7 ENSMUSG00000029193 ENSMUST00000202946 Cckar protein_coding Interval_78195 chr18 10051568 10052854 + 0 NA Intergenic Intergenic -7106 ENSMUSG00000047879.17 ENSMUSG00000047879 ENSMUST00000150321 Usp14 protein_coding Interval_121432 chr4 155749396 155749793 + 0 NA promoter-TSS (ENSMUSG00000029036.18) protein_coding-promoter-TSS (ENSMUSG00000029036.18) 11334 ENSMUSG00000029036.18 ENSMUSG00000029036 ENSMUST00000134317 Atad3a protein_coding Interval_133006 chr5 149245966 149246575 + 0 NA intron (ENSMUSG00000100465.1, intron 1 of 3) lincRNA-intron (ENSMUSG00000100465.1, intron 1 of 3) 1412 ENSMUSG00000100465.1 ENSMUSG00000100465 ENSMUST00000191240 Gm29264 lincRNA Interval_45868 chr13 58633548 58634609 + 0 NA Intergenic Intergenic -23201 ENSMUSG00000021553.14 ENSMUSG00000021553 ENSMUST00000151675 Slc28a3 protein_coding Interval_156686 chr8 57312158 57313216 + 0 NA intron (ENSMUSG00000100510.7, intron 1 of 4) processed_transcript-intron (ENSMUSG00000100510.7, intron 1 of 2) 7541 ENSMUSG00000100510.7 ENSMUSG00000100510 ENSMUST00000187718 Hand2os1 processed_transcript Interval_113617 chr4 57023197 57024150 + 0 NA intron (ENSMUSG00000028434.12, intron 20 of 25) protein_coding-intron (ENSMUSG00000028434.12, intron 2 of 5) -33537 ENSMUSG00000045589.7 ENSMUSG00000045589 ENSMUST00000128276 Frrs1l protein_coding Interval_169368 chr9 96739086 96739819 + 0 NA intron (ENSMUSG00000040433.16, intron 2 of 5) protein_coding-intron (ENSMUSG00000040433.16, intron 2 of 3) 13379 ENSMUSG00000040433.16 ENSMUSG00000040433 ENSMUST00000143403 Zbtb38 protein_coding Interval_36131 chr12 36189233 36189426 + 0 NA intron (ENSMUSG00000036188.4, intron 5 of 7) protein_coding-intron (ENSMUSG00000036188.4, intron 7 of 9) 16961 ENSMUSG00000113511.1 ENSMUSG00000113511 ENSMUST00000221263 Gm19046 processed_pseudogene Interval_8554 chr1 141852424 141854311 + 0 NA Intergenic Intergenic 307161 ENSMUSG00000103858.1 ENSMUSG00000103858 ENSMUST00000191749 Gm37604 TEC Interval_105964 chr3 90340167 90340587 + 0 NA promoter-TSS (ENSMUSG00000042390.9) protein_coding-promoter-TSS (ENSMUSG00000042390.9) 4982 ENSMUSG00000108689.1 ENSMUSG00000108689 ENSMUST00000199820 Gm45354 TEC Interval_60672 chr15 76068933 76070263 + 0 NA TTS (ENSMUSG00000002524.17) protein_coding-TTS (ENSMUSG00000002524.17) -4710 ENSMUSG00000098451.1 ENSMUSG00000098451 ENSMUST00000185092 Mir6952 miRNA Interval_147263 chr7 65275400 65275586 + 0 NA Intergenic Intergenic -62124 ENSMUSG00000108587.1 ENSMUSG00000108587 ENSMUST00000205499 1810049I09Rik lincRNA Interval_127589 chr5 105648548 105649673 + 0 NA Intergenic Intergenic 68670 ENSMUSG00000085771.1 ENSMUSG00000085771 ENSMUST00000150195 C230066G23Rik sense_intronic Interval_82035 chr18 67298434 67298734 + 0 NA intron (ENSMUSG00000024525.7, intron 1 of 7) protein_coding-intron (ENSMUSG00000024525.7, intron 1 of 7) -10005 ENSMUSG00000024525.7 ENSMUSG00000024525 ENSMUST00000237149 Impa2 protein_coding Interval_159422 chr8 94518588 94519013 + 0 NA intron (ENSMUSG00000074151.13, intron 40 of 52) protein_coding-intron (ENSMUSG00000074151.13, intron 36 of 48) 13754 ENSMUSG00000098511.1 ENSMUSG00000098511 ENSMUST00000184542 Mir7072 miRNA Interval_161929 chr8 123825632 123826653 + 0 NA intron (ENSMUSG00000019478.16, intron 2 of 7) protein_coding-intron (ENSMUSG00000019478.16, intron 2 of 6) -1187 ENSMUSG00000019478.16 ENSMUSG00000019478 ENSMUST00000212846 Rab4a protein_coding Interval_131778 chr5 139817396 139817952 + 0 NA intron (ENSMUSG00000098140.1, intron 1 of 3) protein_coding-intron (ENSMUSG00000036687.13, intron 1 of 1) 2243 ENSMUSG00000036687.13 ENSMUSG00000036687 ENSMUST00000147328 Tmem184a protein_coding Interval_117293 chr4 122771316 122771656 + 0 NA Intergenic Intergenic 22263 ENSMUSG00000083494.1 ENSMUSG00000083494 ENSMUST00000119988 Gm12873 unprocessed_pseudogene Interval_102398 chr3 23564774 23565219 + 0 NA Intergenic Intergenic 103946 ENSMUSG00000102203.1 ENSMUSG00000102203 ENSMUST00000194267 4930412E21Rik lincRNA Interval_61051 chr15 78962624 78963348 + 0 NA intron (ENSMUSG00000033088.19, intron 7 of 7) protein_coding-intron (ENSMUSG00000033088.19, intron 7 of 23) 15067 ENSMUSG00000033088.19 ENSMUSG00000033088 ENSMUST00000129922 Triobp protein_coding Interval_136187 chr6 51871389 51871808 + 0 NA exon (ENSMUSG00000059182.7, exon 1 of 1) protein_coding-exon (ENSMUSG00000059182.7, exon 1 of 1) 331 ENSMUSG00000059182.7 ENSMUSG00000059182 ENSMUST00000203313 Skap2 protein_coding Interval_1426 chr1 23049432 23049942 + 0 NA exon (ENSMUSG00000101227.1, exon 4 of 4) sense_overlapping-exon (ENSMUSG00000101227.1, exon 4 of 4) 52566 ENSMUSG00000073730.2 ENSMUSG00000073730 ENSMUST00000073179 Ppp1r14bl protein_coding Interval_63146 chr15 99378405 99379635 + 0 NA Intergenic Intergenic -10885 ENSMUSG00000095635.1 ENSMUSG00000095635 ENSMUST00000179471 Gm22951 snRNA Interval_119607 chr4 138693058 138693789 + 0 NA Intergenic Intergenic 31798 ENSMUSG00000043621.13 ENSMUSG00000043621 ENSMUST00000135156 Ubxn10 protein_coding Interval_86048 chr19 35992522 35992804 + 0 NA intron (ENSMUSG00000024798.15, intron 1 of 3) protein_coding-intron (ENSMUSG00000024798.15, intron 1 of 3) 64844 ENSMUSG00000024798.15 ENSMUSG00000024798 ENSMUST00000099505 Htr7 protein_coding Interval_22019 chr11 5813349 5814167 + 0 NA Intergenic Intergenic 4825 ENSMUSG00000080904.1 ENSMUSG00000080904 ENSMUST00000119907 Gm11966 processed_pseudogene Interval_140611 chr6 120083361 120084207 + 0 NA Intergenic Intergenic -9566 ENSMUSG00000041377.12 ENSMUSG00000041377 ENSMUST00000035244 Ninj2 protein_coding Interval_151984 chr7 127952864 127953873 + 0 NA Intergenic Intergenic -17918 ENSMUSG00000070371.11 ENSMUSG00000070371 ENSMUST00000144192 Prss36 protein_coding Interval_162076 chr8 124911023 124911997 + 0 NA intron (ENSMUSG00000031987.6, intron 4 of 4) protein_coding-intron (ENSMUSG00000031987.6, intron 4 of 4) 9695 ENSMUSG00000031986.6 ENSMUSG00000031986 ENSMUST00000212724 Sprtn protein_coding Interval_147156 chr7 63905211 63905598 + 0 NA intron (ENSMUSG00000052040.10, intron 1 of 1) protein_coding-intron (ENSMUSG00000052040.10, intron 1 of 1) 7430 ENSMUSG00000098708.7 ENSMUSG00000098708 ENSMUST00000184360 Gm27252 processed_transcript Interval_150785 chr7 114520339 114520863 + 0 NA intron (ENSMUSG00000030671.9, intron 9 of 15) protein_coding-intron (ENSMUSG00000030671.9, intron 9 of 15) 13459 ENSMUSG00000030671.9 ENSMUSG00000030671 ENSMUST00000149455 Pde3b protein_coding Interval_162571 chr9 4771361 4772339 + 0 NA intron (ENSMUSG00000025892.16, intron 2 of 15) protein_coding-intron (ENSMUSG00000025892.16, intron 3 of 16) 23669 ENSMUSG00000025892.16 ENSMUSG00000025892 ENSMUST00000163309 Gria4 protein_coding Interval_3615 chr1 60012296 60012766 + 0 NA intron (ENSMUSG00000026018.12, intron 5 of 10) protein_coding-intron (ENSMUSG00000026018.12, intron 5 of 10) 30591 ENSMUSG00000026018.12 ENSMUSG00000026018 ENSMUST00000186970 Ica1l protein_coding Interval_113682 chr4 57559904 57561580 + 0 NA intron (ENSMUSG00000090053.9, intron 1 of 6) protein_coding-intron (ENSMUSG00000090053.9, intron 1 of 6) -7578 ENSMUSG00000090053.9 ENSMUSG00000090053 ENSMUST00000131201 Pakap protein_coding Interval_124543 chr5 50217201 50217628 + 0 NA intron (ENSMUSG00000105020.1, intron 1 of 4) unprocessed_pseudogene-intron (ENSMUSG00000105020.1, intron 1 of 4) 167 ENSMUSG00000105020.1 ENSMUSG00000105020 ENSMUST00000196032 Gm7205 unprocessed_pseudogene Interval_152259 chr7 130993946 130994413 + 0 NA intron (ENSMUSG00000030849.18, intron 2 of 6) protein_coding-intron (ENSMUSG00000030849.18, intron 2 of 6) -37874 ENSMUSG00000047517.12 ENSMUSG00000047517 ENSMUST00000209167 Dmbt1 protein_coding Interval_95458 chr2 109751607 109751852 + 0 NA Intergenic Intergenic 40805 ENSMUSG00000083915.1 ENSMUSG00000083915 ENSMUST00000120873 Gm13932 processed_pseudogene Interval_159895 chr8 104817249 104817820 + 0 NA Intergenic Intergenic -14067 ENSMUSG00000050097.6 ENSMUSG00000050097 ENSMUST00000163042 Ces2b protein_coding Interval_42974 chr13 22005826 22007363 + 0 NA promoter-TSS (ENSMUSG00000006179.9) protein_coding-promoter-TSS (ENSMUSG00000006179.9) 3148 ENSMUSG00000006179.9 ENSMUSG00000006179 ENSMUST00000130585 Prss16 protein_coding Interval_40540 chr12 105582407 105585152 + 0 NA intron (ENSMUSG00000021070.6, intron 1 of 2) protein_coding-intron (ENSMUSG00000021070.6, intron 1 of 2) -19340 ENSMUSG00000041347.5 ENSMUSG00000041347 ENSMUST00000041229 Bdkrb1 protein_coding Interval_74986 chr17 58985922 58986573 + 0 NA intron (ENSMUSG00000024227.14, intron 2 of 12) protein_coding-intron (ENSMUSG00000024227.14, intron 2 of 12) 27021 ENSMUSG00000024228.12 ENSMUSG00000024228 ENSMUST00000174122 Nudt12 protein_coding Interval_125659 chr5 73114376 73115336 + 0 NA intron (ENSMUSG00000070733.13, intron 11 of 19) protein_coding-intron (ENSMUSG00000070733.13, intron 10 of 59) -42158 ENSMUSG00000086376.2 ENSMUSG00000086376 ENSMUST00000146728 1700071G01Rik antisense Interval_52180 chr14 38322634 38323122 + 0 NA intron (ENSMUSG00000114219.1, intron 1 of 3) lincRNA-intron (ENSMUSG00000114219.1, intron 1 of 3) 4974 ENSMUSG00000114219.1 ENSMUSG00000114219 ENSMUST00000225614 Gm31456 lincRNA Interval_33432 chr11 116510993 116511725 + 0 NA Intergenic Intergenic 6823 ENSMUSG00000081318.1 ENSMUSG00000081318 ENSMUST00000119508 Rpl36-ps1 processed_pseudogene Interval_149008 chr7 91672426 91672955 + 0 NA exon (ENSMUSG00000052572.19, exon 1 of 9) protein_coding-exon (ENSMUSG00000052572.19, exon 1 of 9) -5397 ENSMUSG00000064403.1 ENSMUSG00000064403 ENSMUST00000082469 Gm23928 snRNA Interval_126198 chr5 82140756 82142088 + 0 NA Intergenic Intergenic -16712 ENSMUSG00000099863.1 ENSMUSG00000099863 ENSMUST00000186079 1700031L13Rik protein_coding Interval_172828 chrX 50634917 50635918 + 0 NA promoter-TSS (ENSMUSG00000085396.7) processed_transcript-promoter-TSS (ENSMUSG00000085396.7) -70534 ENSMUSG00000085396.7 ENSMUSG00000085396 ENSMUST00000148530 Firre processed_transcript Interval_3853 chr1 63715451 63715786 + 0 NA intron (ENSMUSG00000025963.5, intron 6 of 10) protein_coding-intron (ENSMUSG00000025963.5, intron 6 of 10) 14700 ENSMUSG00000025963.5 ENSMUSG00000025963 ENSMUST00000114094 Mdh1b protein_coding Interval_157455 chr8 70488141 70489950 + 0 NA TTS (ENSMUSG00000110052.1) TEC-TTS (ENSMUSG00000110052.1) 864 ENSMUSG00000110052.1 ENSMUSG00000110052 ENSMUST00000211264 1700020G03Rik TEC Interval_13587 chr10 19977419 19977845 + 0 NA intron (ENSMUSG00000071369.11, intron 1 of 3) protein_coding-intron (ENSMUSG00000071369.11, intron 1 of 29) -69981 ENSMUSG00000020003.16 ENSMUSG00000020003 ENSMUST00000214951 Pex7 protein_coding Interval_19975 chr10 111624362 111625247 + 0 NA Intergenic Intergenic 25008 ENSMUSG00000112357.1 ENSMUSG00000112357 ENSMUST00000217989 Gm47864 processed_pseudogene Interval_57121 chr15 6714870 6715466 + 0 NA intron (ENSMUSG00000050310.9, intron 2 of 9) protein_coding-intron (ENSMUSG00000050310.9, intron 2 of 37) 6789 ENSMUSG00000050310.9 ENSMUSG00000050310 ENSMUST00000061656 Rictor protein_coding Interval_97197 chr2 132200455 132201328 + 0 NA intron (ENSMUSG00000086756.1, intron 2 of 2) antisense-intron (ENSMUSG00000086756.1, intron 2 of 2) 46897 ENSMUSG00000027341.10 ENSMUSG00000027341 ENSMUST00000141813 Tmem230 protein_coding Interval_18830 chr10 91154780 91155028 + 0 NA intron (ENSMUSG00000019961.17, intron 4 of 8) protein_coding-intron (ENSMUSG00000019961.17, intron 4 of 8) 15558 ENSMUSG00000019961.17 ENSMUSG00000019961 ENSMUST00000213270 Tmpo protein_coding Interval_157334 chr8 69614723 69614920 + 0 NA promoter-TSS (ENSMUSG00000060427.15) protein_coding-promoter-TSS (ENSMUSG00000060427.15) -758 ENSMUSG00000060427.15 ENSMUSG00000060427 ENSMUST00000140522 Zfp868 protein_coding Interval_150271 chr7 109168682 109170742 + 0 NA intron (ENSMUSG00000036111.8, intron 1 of 3) protein_coding-intron (ENSMUSG00000036111.8, intron 1 of 3) 800 ENSMUSG00000036111.8 ENSMUSG00000036111 ENSMUST00000208136 Lmo1 protein_coding Interval_114902 chr4 86823250 86823639 + 0 NA intron (ENSMUSG00000038024.17, intron 20 of 30) protein_coding-intron (ENSMUSG00000038024.17, intron 22 of 25) -4867 ENSMUSG00000082969.1 ENSMUSG00000082969 ENSMUST00000121575 Gm12630 processed_pseudogene Interval_154919 chr8 25051829 25052839 + 0 NA intron (ENSMUSG00000031557.16, intron 10 of 11) protein_coding-intron (ENSMUSG00000031557.16, intron 10 of 11) 14406 ENSMUSG00000086289.3 ENSMUSG00000086289 ENSMUST00000211059 Gm16933 lincRNA Interval_104883 chr3 77955346 77956644 + 0 NA Intergenic Intergenic -5389 ENSMUSG00000105026.1 ENSMUSG00000105026 ENSMUST00000196696 Gm18719 processed_pseudogene Interval_87217 chr19 46983542 46984194 + 0 NA intron (ENSMUSG00000025041.17, intron 1 of 17) protein_coding-intron (ENSMUSG00000025041.17, intron 1 of 17) -21560 ENSMUSG00000025041.17 ENSMUSG00000025041 ENSMUST00000237658 Nt5c2 protein_coding Interval_136944 chr6 65008765 65009192 + 0 NA Intergenic Intergenic 18031 ENSMUSG00000086176.4 ENSMUSG00000086176 ENSMUST00000137642 Gm15534 processed_pseudogene Interval_166813 chr9 62915583 62916501 + 0 NA intron (ENSMUSG00000032405.10, intron 6 of 13) protein_coding-intron (ENSMUSG00000032405.10, intron 6 of 13) -48042 ENSMUSG00000074250.11 ENSMUSG00000074250 ENSMUST00000139570 Gm10653 transcribed_processed_pseudogene Interval_57013 chr15 4056790 4057322 + 0 NA intron (ENSMUSG00000022186.14, intron 5 of 15) protein_coding-intron (ENSMUSG00000022186.14, intron 5 of 16) 14976 ENSMUSG00000086297.1 ENSMUSG00000086297 ENSMUST00000135936 Gm15632 antisense Interval_56976 chr14 124532344 124532808 + 0 NA TTS (ENSMUSG00000115191.1) processed_pseudogene-TTS (ENSMUSG00000115191.1) 624 ENSMUSG00000115191.1 ENSMUSG00000115191 ENSMUST00000227084 Gm49071 processed_pseudogene Interval_50235 chr14 10959960 10960171 + 0 NA intron (ENSMUSG00000060579.13, intron 2 of 9) protein_coding-intron (ENSMUSG00000060579.13, intron 2 of 9) -179617 ENSMUSG00000114305.1 ENSMUSG00000114305 ENSMUST00000225136 Gm48437 TEC Interval_104388 chr3 65047514 65047784 + 0 NA intron (ENSMUSG00000027827.17, intron 1 of 13) protein_coding-intron (ENSMUSG00000027827.17, intron 1 of 1) 70231 ENSMUSG00000027827.17 ENSMUSG00000027827 ENSMUST00000161956 Kcnab1 protein_coding Interval_72591 chr17 30862783 30863222 + 0 NA intron (ENSMUSG00000033826.10, intron 3 of 4) protein_coding-intron (ENSMUSG00000033826.10, intron 91 of 92) -5566 ENSMUSG00000117760.1 ENSMUSG00000117760 ENSMUST00000237260 Gm41561 antisense Interval_94979 chr2 102449811 102452320 + 0 NA exon (ENSMUSG00000075012.4, exon 1 of 1) protein_coding-exon (ENSMUSG00000075012.4, exon 1 of 1) 1434 ENSMUSG00000075012.4 ENSMUSG00000075012 ENSMUST00000099678 Fjx1 protein_coding Interval_140566 chr6 119585063 119585660 + 0 NA intron (ENSMUSG00000030172.15, intron 15 of 15) protein_coding-intron (ENSMUSG00000030172.15, intron 18 of 18) 14420 ENSMUSG00000108282.1 ENSMUSG00000108282 ENSMUST00000204314 Gm44317 antisense Interval_142522 chr6 143062993 143063419 + 0 NA intron (ENSMUSG00000030279.15, intron 8 of 24) protein_coding-intron (ENSMUSG00000030279.15, intron 9 of 24) 36884 ENSMUSG00000030279.15 ENSMUSG00000030279 ENSMUST00000205079 C2cd5 protein_coding Interval_62757 chr15 96665853 96667791 + 0 NA Intergenic Intergenic -4971 ENSMUSG00000064928.1 ENSMUSG00000064928 ENSMUST00000082994 Gm22045 snRNA Interval_114002 chr4 62380784 62381052 + 0 NA intron (ENSMUSG00000066150.12, intron 1 of 4) protein_coding-intron (ENSMUSG00000066150.12, intron 1 of 4) -4583 ENSMUSG00000066150.12 ENSMUSG00000066150 ENSMUST00000122092 Slc31a1 protein_coding Interval_71915 chr17 26987299 26987515 + 0 NA intron (ENSMUSG00000117819.1, intron 2 of 8) protein_coding-intron (ENSMUSG00000117819.1, intron 2 of 8) -8781 ENSMUSG00000118007.1 ENSMUSG00000118007 ENSMUST00000237254 Gm50254 antisense Interval_63447 chr15 101141060 101141435 + 0 NA intron (ENSMUSG00000000530.16, intron 10 of 10) protein_coding-intron (ENSMUSG00000000530.16, intron 10 of 10) -9655 ENSMUSG00000087690.1 ENSMUSG00000087690 ENSMUST00000153253 Gm16031 antisense Interval_94412 chr2 90841275 90841990 + 0 NA Intergenic Intergenic -5599 ENSMUSG00000027282.17 ENSMUSG00000027282 ENSMUST00000142350 Mtch2 protein_coding Interval_167677 chr9 71831826 71832792 + 0 NA Intergenic Intergenic -4772 ENSMUSG00000099220.1 ENSMUSG00000099220 ENSMUST00000183453 Gm27220 processed_pseudogene Interval_117841 chr4 126549562 126549902 + 0 NA Intergenic Intergenic -7263 ENSMUSG00000042489.15 ENSMUSG00000042489 ENSMUST00000128202 Clspn protein_coding Interval_67137 chr16 43853246 43855353 + 0 NA Intergenic Intergenic -20488 ENSMUSG00000077251.1 ENSMUSG00000077251 ENSMUST00000104063 Gm26074 snoRNA Interval_10554 chr1 171797984 171798184 + 0 NA intron (ENSMUSG00000015316.11, intron 5 of 6) protein_coding-intron (ENSMUSG00000015316.11, intron 5 of 6) 30929 ENSMUSG00000015316.11 ENSMUSG00000015316 ENSMUST00000163992 Slamf1 protein_coding Interval_43046 chr13 23470787 23471284 + 0 NA Intergenic Intergenic -5626 ENSMUSG00000000706.16 ENSMUSG00000000706 ENSMUST00000225831 Btn1a1 protein_coding Interval_91781 chr2 49505412 49506079 + 0 NA intron (ENSMUSG00000069495.12, intron 2 of 13) protein_coding-intron (ENSMUSG00000069495.12, intron 2 of 13) -23130 ENSMUSG00000069495.12 ENSMUSG00000069495 ENSMUST00000152485 Epc2 protein_coding Interval_59678 chr15 57871012 57871233 + 0 NA TTS (ENSMUSG00000022365.6) protein_coding-TTS (ENSMUSG00000022365.6) 19272 ENSMUSG00000022365.6 ENSMUSG00000022365 ENSMUST00000226911 Derl1 protein_coding Interval_131685 chr5 139285247 139286194 + 0 NA intron (ENSMUSG00000056413.16, intron 3 of 9) protein_coding-intron (ENSMUSG00000056413.16, intron 4 of 10) 17430 ENSMUSG00000056413.16 ENSMUSG00000056413 ENSMUST00000156815 Adap1 protein_coding Interval_66634 chr16 35772481 35772994 + 0 NA intron (ENSMUSG00000022849.5, intron 1 of 2) protein_coding-intron (ENSMUSG00000022849.5, intron 1 of 8) 2330 ENSMUSG00000022849.5 ENSMUSG00000022849 ENSMUST00000023555 Hspbap1 protein_coding Interval_114187 chr4 66471695 66472582 + 0 NA Intergenic Intergenic -67655 ENSMUSG00000028373.16 ENSMUSG00000028373 ENSMUST00000068214 Astn2 protein_coding Interval_6191 chr1 100731143 100731390 + 0 NA Intergenic Intergenic 77466 ENSMUSG00000100977.1 ENSMUSG00000100977 ENSMUST00000190334 Gm29334 processed_pseudogene Interval_101482 chr2 181722175 181722560 + 0 NA Intergenic Intergenic 2575 ENSMUSG00000082786.1 ENSMUSG00000082786 ENSMUST00000120868 Gm14489 processed_pseudogene Interval_66337 chr16 33225957 33226205 + 0 NA intron (ENSMUSG00000022807.9, intron 8 of 12) protein_coding-intron (ENSMUSG00000022807.9, intron 8 of 12) -25361 ENSMUSG00000022808.5 ENSMUSG00000022808 ENSMUST00000231242 Snx4 protein_coding Interval_32315 chr11 106851656 106851871 + 0 NA intron (ENSMUSG00000018363.16, intron 9 of 19) protein_coding-intron (ENSMUSG00000018363.16, intron 8 of 18) 33929 ENSMUSG00000018372.13 ENSMUSG00000018372 ENSMUST00000124898 Cep95 protein_coding Interval_173249 chrX 75201189 75201717 + 0 NA intron (ENSMUSG00000031196.13, intron 24 of 24) protein_coding-intron (ENSMUSG00000031196.13, intron 25 of 25) -31610 ENSMUSG00000083736.1 ENSMUSG00000083736 ENSMUST00000121667 Gm6039 processed_pseudogene Interval_155051 chr8 25966864 25968169 + 0 NA TTS (ENSMUSG00000037260.8) protein_coding-TTS (ENSMUSG00000037260.8) 6537 ENSMUSG00000037260.8 ENSMUSG00000037260 ENSMUST00000209420 Hgsnat protein_coding Interval_146546 chr7 46758968 46759396 + 0 NA Intergenic Intergenic 7311 ENSMUSG00000057465.5 ENSMUSG00000057465 ENSMUST00000211766 Saa2 protein_coding Interval_78304 chr18 11860175 11860937 + 0 NA intron (ENSMUSG00000040957.15, intron 1 of 8) protein_coding-intron (ENSMUSG00000040957.15, intron 1 of 8) 16256 ENSMUSG00000040957.15 ENSMUSG00000040957 ENSMUST00000225430 Cables1 protein_coding Interval_52088 chr14 35625764 35626381 + 0 NA Intergenic Intergenic 56119 ENSMUSG00000098696.1 ENSMUSG00000098696 ENSMUST00000184321 Gm27617 misc_RNA Interval_81964 chr18 66460848 66461705 + 0 NA intron (ENSMUSG00000024521.8, intron 2 of 2) protein_coding-intron (ENSMUSG00000024521.8, intron 2 of 2) 2701 ENSMUSG00000024521.8 ENSMUSG00000024521 ENSMUST00000236933 Pmaip1 protein_coding Interval_157309 chr8 69189464 69190065 + 0 NA Intergenic Intergenic -7534 ENSMUSG00000036306.13 ENSMUSG00000036306 ENSMUST00000184961 Lzts1 protein_coding Interval_50105 chr14 8028015 8029384 + 0 NA intron (ENSMUSG00000025277.14, intron 2 of 8) protein_coding-intron (ENSMUSG00000025277.14, intron 2 of 8) 25780 ENSMUSG00000025277.14 ENSMUSG00000025277 ENSMUST00000026313 Abhd6 protein_coding Interval_161559 chr8 121213172 121213825 + 0 NA intron (ENSMUSG00000092329.1, intron 1 of 15) protein_coding-intron (ENSMUSG00000092329.1, intron 1 of 15) -9896 ENSMUSG00000097097.2 ENSMUSG00000097097 ENSMUST00000212635 5033426O07Rik lincRNA Interval_147810 chr7 73685782 73687196 + 0 NA exon (ENSMUSG00000108337.1, exon 1 of 1) processed_pseudogene-exon (ENSMUSG00000108337.1, exon 1 of 1) 112 ENSMUSG00000108337.1 ENSMUSG00000108337 ENSMUST00000205991 Gm4971 processed_pseudogene Interval_75957 chr17 73765570 73765777 + 0 NA Intergenic Intergenic -38461 ENSMUSG00000024065.8 ENSMUSG00000024065 ENSMUST00000024860 Ehd3 protein_coding Interval_108510 chr3 127826948 127827197 + 0 NA intron (ENSMUSG00000074238.6, intron 1 of 8) protein_coding-intron (ENSMUSG00000074238.6, intron 1 of 9) 5899 ENSMUSG00000105804.1 ENSMUSG00000105804 ENSMUST00000200664 Gm43654 TEC Interval_128203 chr5 111681415 111681718 + 0 NA Intergenic Intergenic -52358 ENSMUSG00000096949.1 ENSMUSG00000096949 ENSMUST00000180627 Gm26897 protein_coding Interval_122684 chr5 24647287 24648034 + 0 NA promoter-TSS (ENSMUSG00000038165.8) transcribed_processed_pseudogene-promoter-TSS (ENSMUSG00000038165.8) 2207 ENSMUSG00000038165.8 ENSMUSG00000038165 ENSMUST00000182745 1700022A21Rik transcribed_processed_pseudogene Interval_30184 chr11 90307141 90307509 + 0 NA Intergenic Intergenic 57869 ENSMUSG00000003948.17 ENSMUSG00000003948 ENSMUST00000004050 Mmd protein_coding Interval_24310 chr11 32277481 32279278 + 0 NA TTS (ENSMUSG00000055609.8) protein_coding-TTS (ENSMUSG00000055609.8) 1486 ENSMUSG00000055609.8 ENSMUSG00000055609 ENSMUST00000145569 Hba-x protein_coding Interval_147245 chr7 65046393 65046778 + 0 NA intron (ENSMUSG00000030518.17, intron 1 of 3) protein_coding-intron (ENSMUSG00000030518.17, intron 1 of 9) -90009 ENSMUSG00000093212.1 ENSMUSG00000093212 ENSMUST00000175471 Gm25249 miRNA Interval_27010 chr11 62346404 62346807 + 0 NA intron (ENSMUSG00000018501.17, intron 5 of 22) protein_coding-intron (ENSMUSG00000018501.17, intron 28 of 45) 15184 ENSMUSG00000081944.1 ENSMUSG00000081944 ENSMUST00000121709 Gm12276 processed_pseudogene Interval_155252 chr8 28881024 28881329 + 0 NA intron (ENSMUSG00000063626.6, intron 2 of 14) protein_coding-intron (ENSMUSG00000063626.6, intron 2 of 17) 206310 ENSMUSG00000109874.1 ENSMUSG00000109874 ENSMUST00000211467 Gm9911 TEC Interval_90369 chr2 30042031 30043180 + 0 NA intron (ENSMUSG00000039715.8, intron 1 of 8) protein_coding-intron (ENSMUSG00000039715.8, intron 1 of 8) 6256 ENSMUSG00000039715.8 ENSMUSG00000039715 ENSMUST00000146275 Wdr34 protein_coding Interval_28129 chr11 73036715 73037310 + 0 NA intron (ENSMUSG00000020785.17, intron 11 of 14) protein_coding-intron (ENSMUSG00000020785.17, intron 11 of 15) -10861 ENSMUSG00000020783.14 ENSMUSG00000020783 ENSMUST00000151823 Ncbp3 protein_coding Interval_158237 chr8 80338920 80339167 + 0 NA Intergenic Intergenic 143844 ENSMUSG00000110294.1 ENSMUSG00000110294 ENSMUST00000211276 Gm45430 lincRNA Interval_116879 chr4 117928257 117929943 + 0 NA exon (ENSMUSG00000028539.14, exon 2 of 5) protein_coding-exon (ENSMUSG00000028539.14, exon 2 of 5) 313 ENSMUSG00000028539.14 ENSMUSG00000028539 ENSMUST00000150612 Artn protein_coding Interval_46908 chr13 73330921 73331628 + 0 NA intron (ENSMUSG00000021607.9, intron 1 of 1) protein_coding-intron (ENSMUSG00000021607.9, intron 1 of 1) 248 ENSMUSG00000021607.9 ENSMUSG00000021607 ENSMUST00000222030 Mrpl36 protein_coding Interval_156298 chr8 47196424 47196765 + 0 NA intron (ENSMUSG00000038143.16, intron 3 of 5) protein_coding-intron (ENSMUSG00000038143.16, intron 2 of 3) 30572 ENSMUSG00000109606.1 ENSMUSG00000109606 ENSMUST00000211539 Gm45537 TEC Interval_173713 chrX 102349290 102349580 + 0 NA intron (ENSMUSG00000067567.12, intron 9 of 10) protein_coding-intron (ENSMUSG00000067567.12, intron 9 of 10) -93910 ENSMUSG00000093428.1 ENSMUSG00000093428 ENSMUST00000176507 Gm26318 miRNA Interval_93352 chr2 72241391 72242537 + 0 NA promoter-TSS (ENSMUSG00000049044.16) protein_coding-promoter-TSS (ENSMUSG00000049044.16) 7011 ENSMUSG00000086231.1 ENSMUSG00000086231 ENSMUST00000132792 Rapgef4os3 antisense Interval_90141 chr2 28496621 28497243 + 0 NA promoter-TSS (ENSMUSG00000026829.9) protein_coding-promoter-TSS (ENSMUSG00000026829.9) 41 ENSMUSG00000026829.9 ENSMUSG00000026829 ENSMUST00000028172 Gbgt1 protein_coding Interval_161656 chr8 121832365 121833642 + 0 NA promoter-TSS (ENSMUSG00000110631.1) lincRNA-promoter-TSS (ENSMUSG00000110631.1) -650 ENSMUSG00000110631.1 ENSMUSG00000110631 ENSMUST00000212899 Gm42047 lincRNA Interval_169969 chr9 103319428 103320020 + 0 NA intron (ENSMUSG00000032555.10, intron 8 of 27) protein_coding-intron (ENSMUSG00000032555.10, intron 8 of 27) -24212 ENSMUSG00000032555.10 ENSMUSG00000032555 ENSMUST00000185972 Topbp1 protein_coding Interval_25600 chr11 50147586 50147932 + 0 NA promoter-TSS (ENSMUSG00000036644.15) protein_coding-promoter-TSS (ENSMUSG00000036644.15) 1187 ENSMUSG00000036644.15 ENSMUSG00000036644 ENSMUST00000141520 Tbc1d9b protein_coding Interval_54865 chr14 75892775 75893139 + 0 NA Intergenic Intergenic 45052 ENSMUSG00000065147.1 ENSMUSG00000065147 ENSMUST00000083213 Snora31 snoRNA Interval_114706 chr4 84089389 84090786 + 0 NA Intergenic Intergenic -14808 ENSMUSG00000083044.1 ENSMUSG00000083044 ENSMUST00000120911 Gm12416 processed_pseudogene Interval_168336 chr9 78856230 78856469 + 0 NA Intergenic Intergenic -34511 ENSMUSG00000059422.5 ENSMUSG00000059422 ENSMUST00000182917 Gm8116 processed_pseudogene Interval_149326 chr7 97453153 97454172 + 0 NA intron (ENSMUSG00000051727.14, intron 2 of 2) protein_coding-intron (ENSMUSG00000051727.14, intron 1 of 2) 2339 ENSMUSG00000051727.14 ENSMUSG00000051727 ENSMUST00000206279 Kctd14 protein_coding Interval_147939 chr7 75764005 75764231 + 0 NA Intergenic Intergenic -6750 ENSMUSG00000076961.1 ENSMUSG00000076961 ENSMUST00000103773 Gm23251 miRNA Interval_10247 chr1 167551491 167551806 + 0 NA Intergenic Intergenic -46812 ENSMUSG00000015843.10 ENSMUSG00000015843 ENSMUST00000111380 Rxrg protein_coding Interval_11901 chr1 186922419 186923451 + 0 NA Intergenic Intergenic -4027 ENSMUSG00000103503.1 ENSMUSG00000103503 ENSMUST00000194671 1700023G09Rik lincRNA Interval_170839 chr9 111077723 111078581 + 0 NA Intergenic Intergenic 2758 ENSMUSG00000088296.1 ENSMUSG00000088296 ENSMUST00000157671 Gm26409 snRNA Interval_48162 chr13 96855362 96856133 + 0 NA intron (ENSMUSG00000109561.1, intron 17 of 24) protein_coding-intron (ENSMUSG00000109561.1, intron 13 of 19) 14859 ENSMUSG00000113046.1 ENSMUSG00000113046 ENSMUST00000221106 Gm48579 processed_pseudogene Interval_40355 chr12 104238018 104238325 + 0 NA TTS (ENSMUSG00000041481.17) protein_coding-TTS (ENSMUSG00000041481.17) 283 ENSMUSG00000118588.1 ENSMUSG00000118588 ENSMUST00000239375 AC142112.1 unprocessed_pseudogene Interval_39470 chr12 88070250 88070454 + 0 NA Intergenic Intergenic 2843 ENSMUSG00000113783.1 ENSMUSG00000113783 ENSMUST00000222311 Gm18617 processed_pseudogene Interval_103911 chr3 54821086 54821269 + 0 NA Intergenic Intergenic -9927 ENSMUSG00000069011.5 ENSMUSG00000069011 ENSMUST00000052888 Gm10254 processed_pseudogene Interval_133872 chr6 13860382 13861802 + 0 NA Intergenic Intergenic 10373 ENSMUSG00000052419.7 ENSMUSG00000052419 ENSMUST00000185361 2610001J05Rik protein_coding Interval_122144 chr5 18087945 18088467 + 0 NA Intergenic Intergenic 125657 ENSMUSG00000028777.8 ENSMUSG00000028777 ENSMUST00000030561 Gnat3 protein_coding Interval_105737 chr3 89066656 89067025 + 0 NA intron (ENSMUSG00000028053.13, intron 20 of 27) protein_coding-intron (ENSMUSG00000028053.13, intron 19 of 26) -17713 ENSMUSG00000077804.1 ENSMUSG00000077804 ENSMUST00000104616 Gm24403 snoRNA Interval_63969 chr16 4907692 4908433 + 0 NA intron (ENSMUSG00000022517.17, intron 2 of 16) protein_coding-intron (ENSMUSG00000022517.17, intron 2 of 15) 21676 ENSMUSG00000022517.17 ENSMUSG00000022517 ENSMUST00000230108 Mgrn1 protein_coding Interval_63721 chr15 103026584 103028188 + 0 NA intron (ENSMUSG00000075394.4, intron 1 of 3) protein_coding-intron (ENSMUSG00000075394.4, intron 1 of 3) 8452 ENSMUSG00000075394.4 ENSMUSG00000075394 ENSMUST00000100164 Hoxc4 protein_coding Interval_51159 chr14 24244311 24246116 + 0 NA promoter-TSS (ENSMUSG00000021782.14) protein_coding-promoter-TSS (ENSMUSG00000021782.14) -1822 ENSMUSG00000091079.1 ENSMUSG00000091079 ENSMUST00000163715 Gm17105 sense_intronic Interval_164642 chr9 40239239 40242730 + 0 NA Intergenic Intergenic 35548 ENSMUSG00000111509.1 ENSMUSG00000111509 ENSMUST00000215330 Gm47266 TEC Interval_18274 chr10 84515373 84515922 + 0 NA Intergenic Intergenic -2398 ENSMUSG00000111514.1 ENSMUSG00000111514 ENSMUST00000215920 E230014E18Rik lincRNA Interval_21736 chr11 4025244 4025937 + 0 NA Intergenic Intergenic -5875 ENSMUSG00000019368.13 ENSMUSG00000019368 ENSMUST00000134482 Sec14l4 protein_coding Interval_11374 chr1 181345369 181346339 + 0 NA Intergenic Intergenic -7572 ENSMUSG00000026514.14 ENSMUSG00000026514 ENSMUST00000209607 Cnih3 protein_coding Interval_70519 chr17 11480234 11480533 + 0 NA intron (ENSMUSG00000023826.16, intron 5 of 10) protein_coding-intron (ENSMUSG00000023826.16, intron 5 of 6) 65415 ENSMUSG00000099618.1 ENSMUSG00000099618 ENSMUST00000185957 Gm28118 processed_pseudogene Interval_38774 chr12 82246865 82249246 + 0 NA intron (ENSMUSG00000042700.16, intron 3 of 3) protein_coding-intron (ENSMUSG00000042700.16, intron 2 of 22) 78579 ENSMUSG00000042700.16 ENSMUSG00000042700 ENSMUST00000221327 Sipa1l1 protein_coding Interval_118594 chr4 132682016 132683512 + 0 NA intron (ENSMUSG00000028886.15, intron 7 of 9) protein_coding-intron (ENSMUSG00000028886.15, intron 4 of 14) 43718 ENSMUSG00000028886.15 ENSMUSG00000028886 ENSMUST00000130833 Eya3 protein_coding Interval_19025 chr10 93872263 93873410 + 0 NA intron (ENSMUSG00000036112.15, intron 4 of 5) protein_coding-intron (ENSMUSG00000036112.15, intron 4 of 10) 14650 ENSMUSG00000036112.15 ENSMUSG00000036112 ENSMUST00000181434 Metap2 protein_coding Interval_68025 chr16 64058704 64059035 + 0 NA Intergenic Intergenic -103739 ENSMUSG00000116722.1 ENSMUSG00000116722 ENSMUST00000231945 Gm49627 processed_pseudogene Interval_41289 chr12 112502386 112503719 + 0 NA intron (ENSMUSG00000054013.6, intron 3 of 3) protein_coding-intron (ENSMUSG00000054013.6, intron 3 of 3) 13578 ENSMUSG00000043122.7 ENSMUSG00000043122 ENSMUST00000223266 A530016L24Rik protein_coding Interval_4153 chr1 70879041 70879234 + 0 NA intron (ENSMUSG00000045648.15, intron 5 of 5) protein_coding-intron (ENSMUSG00000045648.15, intron 3 of 3) 153214 ENSMUSG00000045648.15 ENSMUSG00000045648 ENSMUST00000162182 Vwc2l protein_coding Interval_117659 chr4 125361897 125362260 + 0 NA Intergenic Intergenic -128622 ENSMUSG00000001985.9 ENSMUSG00000001985 ENSMUST00000030676 Grik3 protein_coding Interval_110753 chr4 8067586 8068517 + 0 NA Intergenic Intergenic -50569 ENSMUSG00000083068.1 ENSMUSG00000083068 ENSMUST00000120050 Gm11800 processed_pseudogene Interval_117199 chr4 120528320 120529557 + 0 NA promoter-TSS (ENSMUSG00000000085.16) protein_coding-promoter-TSS (ENSMUSG00000000085.16) -3293 ENSMUSG00000047518.3 ENSMUSG00000047518 ENSMUST00000062990 Slfnl1 protein_coding Interval_173564 chrX 99455319 99456425 + 0 NA Intergenic Intergenic -3153 ENSMUSG00000085553.1 ENSMUSG00000085553 ENSMUST00000129259 Gm14808 antisense Interval_34637 chr12 8255757 8256321 + 0 NA intron (ENSMUSG00000037669.15, intron 3 of 4) protein_coding-intron (ENSMUSG00000037669.15, intron 4 of 6) 37655 ENSMUSG00000112441.1 ENSMUSG00000112441 ENSMUST00000217967 Gm48898 lincRNA Interval_26004 chr11 53440921 53441117 + 0 NA Intergenic Intergenic 9996 ENSMUSG00000018238.6 ENSMUSG00000018238 ENSMUST00000018382 Gdf9 protein_coding Interval_113267 chr4 52703554 52703779 + 0 NA Intergenic Intergenic 96460 ENSMUSG00000028314.6 ENSMUSG00000028314 ENSMUST00000107671 Toporsl protein_coding Interval_83577 chr18 90005972 90006391 + 0 NA Intergenic Intergenic 12898 ENSMUSG00000118035.1 ENSMUSG00000118035 ENSMUST00000237041 Gm6173 processed_pseudogene Interval_46093 chr13 61614397 61614812 + 0 NA Intergenic Intergenic -40699 ENSMUSG00000113295.1 ENSMUSG00000113295 ENSMUST00000222397 Gm49357 lincRNA Interval_16789 chr10 68171478 68172364 + 0 NA intron (ENSMUSG00000019947.10, intron 4 of 10) protein_coding-intron (ENSMUSG00000019947.10, intron 4 of 10) 106819 ENSMUSG00000019947.10 ENSMUSG00000019947 ENSMUST00000218425 Arid5b protein_coding Interval_47111 chr13 75872812 75873831 + 0 NA intron (ENSMUSG00000021589.13, intron 4 of 4) protein_coding-intron (ENSMUSG00000021589.13, intron 11 of 11) 4074 ENSMUSG00000021589.13 ENSMUSG00000021589 ENSMUST00000109606 Rhobtb3 protein_coding Interval_52925 chr14 52082497 52082806 + 0 NA intron (ENSMUSG00000060373.15, intron 3 of 8) protein_coding-intron (ENSMUSG00000060373.15, intron 3 of 8) -10724 ENSMUSG00000115541.1 ENSMUSG00000115541 ENSMUST00000227288 Gm49258 processed_pseudogene Interval_158357 chr8 82744100 82745036 + 0 NA Intergenic Intergenic -3048 ENSMUSG00000109893.1 ENSMUSG00000109893 ENSMUST00000211321 Gm9655 processed_pseudogene Interval_165876 chr9 54112948 54113317 + 0 NA Intergenic Intergenic -44760 ENSMUSG00000074345.4 ENSMUSG00000074345 ENSMUST00000214656 Tnfaip8l3 protein_coding Interval_3923 chr1 64824073 64824430 + 0 NA intron (ENSMUSG00000051344.13, intron 6 of 8) protein_coding-intron (ENSMUSG00000051344.13, intron 6 of 7) 12513 ENSMUSG00000051344.13 ENSMUSG00000051344 ENSMUST00000134097 Plekhm3 protein_coding Interval_152198 chr7 130590267 130591357 + 0 NA intron (ENSMUSG00000030852.18, intron 2 of 3) protein_coding-intron (ENSMUSG00000030852.18, intron 1 of 20) -51604 ENSMUSG00000040331.16 ENSMUSG00000040331 ENSMUST00000161414 Nsmce4a protein_coding Interval_128263 chr5 112137801 112139310 + 0 NA Intergenic Intergenic -17682 ENSMUSG00000104538.1 ENSMUSG00000104538 ENSMUST00000197688 1700016B01Rik lincRNA Interval_2710 chr1 43730438 43731209 + 0 NA exon (ENSMUSG00000026051.8, exon 1 of 4) protein_coding-exon (ENSMUSG00000026051.8, exon 1 of 4) 221 ENSMUSG00000026051.8 ENSMUSG00000026051 ENSMUST00000027217 Ecrg4 protein_coding Interval_17218 chr10 75059303 75061981 + 0 NA promoter-TSS (ENSMUSG00000009681.10) protein_coding-promoter-TSS (ENSMUSG00000009681.10) 23553 ENSMUSG00000020175.15 ENSMUSG00000020175 ENSMUST00000151432 Rab36 protein_coding Interval_157932 chr8 76618445 76618980 + 0 NA TTS (ENSMUSG00000099012.1) rRNA-TTS (ENSMUSG00000099012.1) 570 ENSMUSG00000099012.1 ENSMUSG00000099012 ENSMUST00000185045 Gm27355 rRNA Interval_65611 chr16 24057087 24057305 + 0 NA intron (ENSMUSG00000116290.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000116290.1, intron 1 of 1) 17290 ENSMUSG00000116290.1 ENSMUSG00000116290 ENSMUST00000230357 Gm49518 lincRNA Interval_139770 chr6 108543441 108544554 + 0 NA intron (ENSMUSG00000030102.11, intron 61 of 61) protein_coding-intron (ENSMUSG00000030102.11, intron 61 of 61) -18310 ENSMUSG00000107458.1 ENSMUSG00000107458 ENSMUST00000203360 Gm44040 antisense Interval_102027 chr3 15264403 15264903 + 0 NA Intergenic Intergenic 67649 ENSMUSG00000078783.1 ENSMUSG00000078783 ENSMUST00000108361 Gm9733 protein_coding Interval_140050 chr6 113653878 113654177 + 0 NA intron (ENSMUSG00000060477.14, intron 2 of 11) protein_coding-intron (ENSMUSG00000060477.14, intron 2 of 12) -12506 ENSMUSG00000107723.1 ENSMUSG00000107723 ENSMUST00000203570 Gm43964 antisense Interval_113747 chr4 58059431 58060133 + 0 NA intron (ENSMUSG00000028369.15, intron 40 of 47) protein_coding-intron (ENSMUSG00000028369.15, intron 40 of 47) -50658 ENSMUSG00000038709.15 ENSMUSG00000038709 ENSMUST00000239406 Txndc8 protein_coding Interval_37383 chr12 66269895 66270185 + 0 NA TTS (ENSMUSG00000113531.1) processed_pseudogene-TTS (ENSMUSG00000113531.1) 775 ENSMUSG00000113531.1 ENSMUSG00000113531 ENSMUST00000222565 Gm2915 processed_pseudogene Interval_86135 chr19 36958430 36958850 + 0 NA intron (ENSMUSG00000040565.8, intron 6 of 37) protein_coding-intron (ENSMUSG00000040565.8, intron 6 of 37) -1545 ENSMUSG00000040565.8 ENSMUSG00000040565 ENSMUST00000236343 Btaf1 protein_coding Interval_116776 chr4 117242083 117243542 + 0 NA TTS (ENSMUSG00000060268.12) protein_coding-TTS (ENSMUSG00000060268.12) 9105 ENSMUSG00000060268.12 ENSMUSG00000060268 ENSMUST00000130660 Armh1 protein_coding Interval_157331 chr8 69405549 69406338 + 0 NA Intergenic Intergenic 6218 ENSMUSG00000088329.1 ENSMUSG00000088329 ENSMUST00000157704 Gm25661 ribozyme Interval_171184 chr9 115034516 115035067 + 0 NA intron (ENSMUSG00000040875.12, intron 1 of 11) protein_coding-intron (ENSMUSG00000040875.12, intron 1 of 11) 36175 ENSMUSG00000040875.12 ENSMUSG00000040875 ENSMUST00000182413 Osbpl10 protein_coding Interval_4063 chr1 67018989 67019220 + 0 NA TTS (ENSMUSG00000026000.16) protein_coding-TTS (ENSMUSG00000026000.16) 3114 ENSMUSG00000026000.16 ENSMUSG00000026000 ENSMUST00000189210 Lancl1 protein_coding Interval_8726 chr1 150122648 150123499 + 0 NA Intergenic Intergenic 22741 ENSMUSG00000032487.8 ENSMUSG00000032487 ENSMUST00000190784 Ptgs2 protein_coding Interval_22987 chr11 18502382 18503325 + 0 NA Intergenic Intergenic 7087 ENSMUSG00000082852.2 ENSMUSG00000082852 ENSMUST00000121061 Gm12021 processed_pseudogene Interval_39533 chr12 89450869 89451602 + 0 NA intron (ENSMUSG00000066392.12, intron 7 of 18) protein_coding-intron (ENSMUSG00000066392.12, intron 8 of 19) 19899 ENSMUSG00000080680.1 ENSMUSG00000080680 ENSMUST00000117030 Gm23989 miRNA Interval_113908 chr4 59782992 59784476 + 0 NA promoter-TSS (ENSMUSG00000038544.14) protein_coding-promoter-TSS (ENSMUSG00000038544.14) 17855 ENSMUSG00000038544.14 ENSMUSG00000038544 ENSMUST00000138097 Inip protein_coding Interval_45518 chr13 55607302 55608624 + 0 NA TTS (ENSMUSG00000021504.14) protein_coding-TTS (ENSMUSG00000021504.14) -3180 ENSMUSG00000086506.1 ENSMUSG00000086506 ENSMUST00000138992 Gm15911 antisense Interval_10901 chr1 176790120 176790327 + 0 NA intron (ENSMUSG00000057335.11, intron 3 of 19) protein_coding-intron (ENSMUSG00000057335.11, intron 3 of 19) -3733 ENSMUSG00000084749.1 ENSMUSG00000084749 ENSMUST00000122800 Gm25288 misc_RNA Interval_161829 chr8 123073564 123073851 + 0 NA promoter-TSS (ENSMUSG00000000738.18) protein_coding-promoter-TSS (ENSMUSG00000000738.18) -20814 ENSMUSG00000000738.18 ENSMUSG00000000738 ENSMUST00000212364 Spg7 protein_coding Interval_19894 chr10 110989726 110989929 + 0 NA intron (ENSMUSG00000035798.14, intron 1 of 16) protein_coding-intron (ENSMUSG00000035798.14, intron 1 of 16) 20168 ENSMUSG00000035798.14 ENSMUSG00000035798 ENSMUST00000218981 Zdhhc17 protein_coding Interval_109574 chr3 144564073 144564381 + 0 NA intron (ENSMUSG00000040151.9, intron 1 of 3) protein_coding-intron (ENSMUSG00000040151.9, intron 1 of 6) 5931 ENSMUSG00000040151.9 ENSMUSG00000040151 ENSMUST00000199680 Hs2st1 protein_coding Interval_119784 chr4 139966337 139968227 + 0 NA TTS (ENSMUSG00000089294.1) miRNA-TTS (ENSMUSG00000089294.1) 338 ENSMUSG00000089294.1 ENSMUSG00000089294 ENSMUST00000158669 Mir2139 miRNA Interval_140900 chr6 122661909 122664066 + 0 NA Intergenic Intergenic -33014 ENSMUSG00000072789.4 ENSMUSG00000072789 ENSMUST00000121713 Gm10420 processed_pseudogene Interval_17490 chr10 77210903 77211423 + 0 NA Intergenic Intergenic 48060 ENSMUSG00000078444.3 ENSMUSG00000078444 ENSMUST00000105408 Gm10941 bidirectional_promoter_lncRNA Interval_109601 chr3 145003528 145003859 + 0 NA TTS (ENSMUSG00000028255.6) protein_coding-TTS (ENSMUSG00000028255.6) 15222 ENSMUSG00000028255.6 ENSMUSG00000028255 ENSMUST00000198832 Clca1 protein_coding Interval_91564 chr2 43408430 43409045 + 0 NA Intergenic Intergenic 110661 ENSMUSG00000080994.2 ENSMUSG00000080994 ENSMUST00000119418 Gm13464 processed_pseudogene Interval_110040 chr3 152715918 152716271 + 0 NA intron (ENSMUSG00000039047.17, intron 1 of 7) protein_coding-intron (ENSMUSG00000039047.17, intron 1 of 11) 1971 ENSMUSG00000039047.17 ENSMUSG00000039047 ENSMUST00000160651 Pigk protein_coding Interval_46363 chr13 64210091 64210578 + 0 NA promoter-TSS (ENSMUSG00000113804.1) processed_pseudogene-promoter-TSS (ENSMUSG00000113804.1) -189 ENSMUSG00000113804.1 ENSMUSG00000113804 ENSMUST00000221567 Gm46424 processed_pseudogene Interval_61495 chr15 81980295 81981164 + 0 NA exon (ENSMUSG00000061633.3, exon 1 of 1) protein_coding-exon (ENSMUSG00000061633.3, exon 1 of 1) 189 ENSMUSG00000061633.3 ENSMUSG00000061633 ENSMUST00000074608 1700029P11Rik protein_coding Interval_69869 chr16 97736098 97737311 + 0 NA Intergenic Intergenic 27083 ENSMUSG00000005251.15 ENSMUSG00000005251 ENSMUST00000019386 Ripk4 protein_coding Interval_99559 chr2 163179559 163179770 + 0 NA Intergenic Intergenic -23558 ENSMUSG00000086036.1 ENSMUSG00000086036 ENSMUST00000136371 Gm14254 lincRNA Interval_103210 chr3 36831828 36832027 + 0 NA Intergenic Intergenic -6969 ENSMUSG00000084027.1 ENSMUSG00000084027 ENSMUST00000120538 Gm12376 processed_pseudogene Interval_114276 chr4 70409434 70411054 + 0 NA exon (ENSMUSG00000039298.16, exon 1 of 34) protein_coding-exon (ENSMUSG00000039298.16, exon 1 of 34) 199 ENSMUSG00000039298.16 ENSMUSG00000039298 ENSMUST00000126416 Cdk5rap2 protein_coding Interval_131289 chr5 136186456 136187333 + 0 NA intron (ENSMUSG00000039737.11, intron 5 of 5) protein_coding-intron (ENSMUSG00000039737.11, intron 3 of 3) 12069 ENSMUSG00000039737.11 ENSMUSG00000039737 ENSMUST00000149151 Prkrip1 protein_coding Interval_79584 chr18 33876994 33877207 + 0 NA intron (ENSMUSG00000024376.7, intron 5 of 5) protein_coding-intron (ENSMUSG00000024376.7, intron 7 of 23) 81936 ENSMUSG00000092819.1 ENSMUSG00000092819 ENSMUST00000175078 Gm23639 snoRNA Interval_49888 chr13 117805905 117806182 + 0 NA intron (ENSMUSG00000021730.8, intron 2 of 7) protein_coding-intron (ENSMUSG00000021730.8, intron 2 of 7) -86032 ENSMUSG00000079048.8 ENSMUSG00000079048 ENSMUST00000110292 4933413L06Rik antisense Interval_115186 chr4 93790019 93790821 + 0 NA Intergenic Intergenic -11913 ENSMUSG00000073797.5 ENSMUSG00000073797 ENSMUST00000121966 Gm12650 processed_pseudogene Interval_83540 chr18 89011116 89011779 + 0 NA exon (ENSMUSG00000023066.10, exon 13 of 13) protein_coding-exon (ENSMUSG00000023066.10, exon 13 of 13) 39417 ENSMUSG00000098676.1 ENSMUSG00000098676 ENSMUST00000183668 Mir6359 miRNA Interval_54709 chr14 73499824 73500808 + 0 NA Intergenic Intergenic 7223 ENSMUSG00000115530.1 ENSMUSG00000115530 ENSMUST00000226353 Gm4266 processed_pseudogene Interval_174526 chrX 156677888 156678573 + 0 NA Intergenic Intergenic 1573 ENSMUSG00000083573.1 ENSMUSG00000083573 ENSMUST00000118798 Gm7312 processed_pseudogene Interval_110358 chr3 157404709 157406176 + 0 NA Intergenic Intergenic -4575 ENSMUSG00000104555.1 ENSMUSG00000104555 ENSMUST00000197739 Gm5983 processed_pseudogene Interval_74521 chr17 52758610 52758848 + 0 NA intron (ENSMUSG00000035580.10, intron 3 of 15) protein_coding-intron (ENSMUSG00000035580.10, intron 3 of 15) -156069 ENSMUSG00000098552.1 ENSMUSG00000098552 ENSMUST00000183438 Gm27217 antisense Interval_21855 chr11 4763614 4763876 + 0 NA Intergenic Intergenic -16967 ENSMUSG00000009075.2 ENSMUSG00000009075 ENSMUST00000009219 Cabp7 protein_coding Interval_106436 chr3 96195796 96196201 + 0 NA TTS (ENSMUSG00000015943.11) protein_coding-TTS (ENSMUSG00000015943.11) 3452 ENSMUSG00000038486.9 ENSMUSG00000038486 ENSMUST00000196912 Sv2a protein_coding Interval_121748 chr5 6471529 6472090 + 0 NA Intergenic Intergenic -42577 ENSMUSG00000104663.1 ENSMUSG00000104663 ENSMUST00000197670 Gm3203 processed_pseudogene Interval_37076 chr12 57471390 57472445 + 0 NA intron (ENSMUSG00000047022.18, intron 11 of 11) protein_coding-intron (ENSMUSG00000047022.18, intron 10 of 10) -21797 ENSMUSG00000086372.1 ENSMUSG00000086372 ENSMUST00000145464 Gm16246 antisense Interval_137149 chr6 68279288 68280128 + 0 NA Intergenic Intergenic 9223 ENSMUSG00000093861.2 ENSMUSG00000093861 ENSMUST00000103321 Igkv1-110 IG_V_gene Interval_26802 chr11 60709980 60710208 + 0 NA exon (ENSMUSG00000020536.12, exon 15 of 22) protein_coding-exon (ENSMUSG00000020536.12, exon 15 of 22) 5897 ENSMUSG00000020536.12 ENSMUSG00000020536 ENSMUST00000128749 Llgl1 protein_coding Interval_118591 chr4 132656770 132659389 + 0 NA intron (ENSMUSG00000028886.15, intron 3 of 16) protein_coding-intron (ENSMUSG00000028886.15, intron 2 of 14) 19033 ENSMUSG00000028886.15 ENSMUSG00000028886 ENSMUST00000130833 Eya3 protein_coding Interval_15890 chr10 58890437 58891449 + 0 NA intron (ENSMUSG00000037990.18, intron 1 of 9) protein_coding-intron (ENSMUSG00000037990.18, intron 1 of 2) -74600 ENSMUSG00000098653.1 ENSMUSG00000098653 ENSMUST00000183751 Gm27672 miRNA Interval_160210 chr8 107139483 107140762 + 0 NA Intergenic Intergenic 21012 ENSMUSG00000102271.1 ENSMUSG00000102271 ENSMUST00000193420 C630050I24Rik TEC Interval_26772 chr11 60361061 60361356 + 0 NA intron (ENSMUSG00000056598.16, intron 3 of 13) protein_coding-intron (ENSMUSG00000056598.16, intron 3 of 6) 7851 ENSMUSG00000056598.16 ENSMUSG00000056598 ENSMUST00000108722 Drc3 protein_coding Interval_115571 chr4 100908874 100911856 + 0 NA intron (ENSMUSG00000028532.14, intron 3 of 26) protein_coding-intron (ENSMUSG00000028532.14, intron 3 of 26) -84345 ENSMUSG00000028532.14 ENSMUSG00000028532 ENSMUST00000136430 Cachd1 protein_coding Interval_97394 chr2 135742725 135743183 + 0 NA TTS (ENSMUSG00000039943.16) protein_coding-TTS (ENSMUSG00000039943.16) 1124 ENSMUSG00000039943.16 ENSMUSG00000039943 ENSMUST00000147122 Plcb4 protein_coding Interval_124887 chr5 59310748 59310946 + 0 NA Intergenic Intergenic -95795 ENSMUSG00000096124.1 ENSMUSG00000096124 ENSMUST00000177609 Gm22308 snRNA Interval_87767 chr19 55732532 55733539 + 0 NA Intergenic Intergenic -9229 ENSMUSG00000024985.20 ENSMUSG00000024985 ENSMUST00000148666 Tcf7l2 protein_coding Interval_61409 chr15 81416579 81417760 + 0 NA TTS (ENSMUSG00000022401.12) protein_coding-TTS (ENSMUSG00000022401.12) 2019 ENSMUSG00000091492.1 ENSMUSG00000091492 ENSMUST00000133273 Gm17025 antisense Interval_8045 chr1 135394962 135395564 + 0 NA intron (ENSMUSG00000041879.13, intron 15 of 24) protein_coding-intron (ENSMUSG00000041879.13, intron 14 of 23) -6563 ENSMUSG00000041879.13 ENSMUSG00000041879 ENSMUST00000159173 Ipo9 protein_coding Interval_45753 chr13 57724924 57725125 + 0 NA intron (ENSMUSG00000056222.15, intron 2 of 10) protein_coding-intron (ENSMUSG00000056222.15, intron 1 of 9) 183308 ENSMUSG00000056222.15 ENSMUSG00000056222 ENSMUST00000185905 Spock1 protein_coding Interval_49151 chr13 108637211 108637668 + 0 NA intron (ENSMUSG00000021699.17, intron 2 of 4) protein_coding-intron (ENSMUSG00000021699.17, intron 1 of 3) -33164 ENSMUSG00000059751.7 ENSMUSG00000059751 ENSMUST00000074680 Rps3a3 processed_pseudogene Interval_1613 chr1 29978273 29979377 + 0 NA Intergenic Intergenic -7109 ENSMUSG00000096829.1 ENSMUSG00000096829 ENSMUST00000178702 Gm23771 miRNA Interval_172575 chrX 36910826 36911704 + 0 NA TTS (ENSMUSG00000050379.15) protein_coding-TTS (ENSMUSG00000050379.15) 431 ENSMUSG00000087155.1 ENSMUSG00000087155 ENSMUST00000147429 Gm15008 antisense Interval_95379 chr2 107440220 107440420 + 0 NA Intergenic Intergenic 148925 ENSMUSG00000042604.5 ENSMUSG00000042604 ENSMUST00000173191 Kcna4 protein_coding Interval_93106 chr2 70261687 70262907 + 0 NA intron (ENSMUSG00000042064.13, intron 22 of 33) protein_coding-intron (ENSMUSG00000042064.13, intron 23 of 34) 179223 ENSMUSG00000042064.13 ENSMUSG00000042064 ENSMUST00000112241 Myo3b protein_coding Interval_155663 chr8 35859816 35860623 + 0 NA Intergenic Intergenic 22738 ENSMUSG00000109761.1 ENSMUSG00000109761 ENSMUST00000210717 5430403N17Rik lincRNA Interval_143359 chr7 6105761 6105999 + 0 NA TTS (ENSMUSG00000034690.13) protein_coding-TTS (ENSMUSG00000034690.13) -30550 ENSMUSG00000108923.1 ENSMUSG00000108923 ENSMUST00000208973 4933431C10Rik TEC Interval_171746 chr9 120676890 120677440 + 0 NA TTS (ENSMUSG00000111533.1) processed_transcript-TTS (ENSMUSG00000111533.1) 2760 ENSMUSG00000111533.1 ENSMUSG00000111533 ENSMUST00000214671 Gm39458 processed_transcript Interval_154205 chr8 13430427 13430631 + 0 NA Intergenic Intergenic -4660 ENSMUSG00000038457.17 ENSMUSG00000038457 ENSMUST00000209950 Tmem255b protein_coding Interval_150549 chr7 112328381 112328971 + 0 NA exon (ENSMUSG00000038244.14, exon 14 of 24) protein_coding-exon (ENSMUSG00000038244.14, exon 14 of 24) -20718 ENSMUSG00000038244.14 ENSMUSG00000038244 ENSMUST00000140202 Mical2 protein_coding Interval_60693 chr15 76197750 76199969 + 0 NA promoter-TSS (ENSMUSG00000022565.15) protein_coding-promoter-TSS (ENSMUSG00000022565.15) 7462 ENSMUSG00000022565.15 ENSMUSG00000022565 ENSMUST00000165135 Plec protein_coding Interval_128806 chr5 115372960 115375108 + 0 NA intron (ENSMUSG00000087292.1, intron 2 of 2) lincRNA-intron (ENSMUSG00000087292.1, intron 2 of 2) -13911 ENSMUSG00000086352.1 ENSMUSG00000086352 ENSMUST00000139500 4930401G09Rik lincRNA Interval_142577 chr6 143482482 143482982 + 0 NA Intergenic Intergenic -17335 ENSMUSG00000077241.1 ENSMUSG00000077241 ENSMUST00000104053 Gm23272 snoRNA Interval_159511 chr8 95172800 95173306 + 0 NA intron (ENSMUSG00000031788.14, intron 1 of 4) protein_coding-intron (ENSMUSG00000031788.14, intron 1 of 4) 34743 ENSMUSG00000110475.1 ENSMUSG00000110475 ENSMUST00000212925 Gm31036 antisense Interval_51971 chr14 34355083 34356527 + 0 NA promoter-TSS (ENSMUSG00000043681.5) protein_coding-promoter-TSS (ENSMUSG00000043681.5) -372 ENSMUSG00000043681.5 ENSMUSG00000043681 ENSMUST00000052126 Fam25c protein_coding Interval_143599 chr7 13046077 13046552 + 0 NA intron (ENSMUSG00000030380.17, intron 5 of 6) protein_coding-intron (ENSMUSG00000030380.17, intron 5 of 6) 6066 ENSMUSG00000030380.17 ENSMUSG00000030380 ENSMUST00000183176 Mzf1 protein_coding Interval_36292 chr12 40824045 40824501 + 0 NA intron (ENSMUSG00000035954.10, intron 42 of 51) protein_coding-intron (ENSMUSG00000035954.10, intron 42 of 52) -51264 ENSMUSG00000113435.1 ENSMUSG00000113435 ENSMUST00000221545 Gm19441 processed_pseudogene Interval_4543 chr1 74900251 74902530 + 0 NA promoter-TSS (ENSMUSG00000065616.3) miRNA-promoter-TSS (ENSMUSG00000065616.3) -669 ENSMUSG00000065616.3 ENSMUSG00000065616 ENSMUST00000083682 Mir375 miRNA Interval_169962 chr9 103271984 103272580 + 0 NA exon (ENSMUSG00000033688.10, exon 8 of 8) protein_coding-exon (ENSMUSG00000033688.10, exon 8 of 8) -6057 ENSMUSG00000033688.10 ENSMUSG00000033688 ENSMUST00000142540 1300017J02Rik protein_coding Interval_84267 chr19 9110166 9110770 + 0 NA exon (ENSMUSG00000024654.8, exon 7 of 7) protein_coding-exon (ENSMUSG00000024654.8, exon 7 of 7) -22510 ENSMUSG00000024653.2 ENSMUSG00000024653 ENSMUST00000025554 Scgb1a1 protein_coding Interval_169028 chr9 90450696 90450902 + 0 NA Intergenic Intergenic 98804 ENSMUSG00000065881.1 ENSMUSG00000065881 ENSMUST00000083947 Gm22866 snRNA Interval_161632 chr8 121687488 121689474 + 0 NA intron (ENSMUSG00000092329.1, intron 1 of 15) protein_coding-intron (ENSMUSG00000092329.1, intron 1 of 15) -14393 ENSMUSG00000110673.1 ENSMUSG00000110673 ENSMUST00000211931 Gm45833 lincRNA Interval_33271 chr11 115587890 115588726 + 0 NA promoter-TSS (ENSMUSG00000020740.13) protein_coding-promoter-TSS (ENSMUSG00000020740.13) -13348 ENSMUSG00000089476.1 ENSMUSG00000089476 ENSMUST00000158851 Gm25364 snRNA Interval_115603 chr4 101327655 101330956 + 0 NA Intergenic Intergenic -7560 ENSMUSG00000085721.1 ENSMUSG00000085721 ENSMUST00000131864 Gm12796 lincRNA Interval_82027 chr18 67258017 67259284 + 0 NA Intergenic Intergenic -13209 ENSMUSG00000062526.4 ENSMUSG00000062526 ENSMUST00000237631 Mppe1 protein_coding Interval_139658 chr6 106148178 106148502 + 0 NA intron (ENSMUSG00000064293.14, intron 2 of 3) protein_coding-intron (ENSMUSG00000064293.14, intron 1 of 15) -470759 ENSMUSG00000085067.2 ENSMUSG00000085067 ENSMUST00000142962 Gm15631 lincRNA Interval_101753 chr3 9407943 9408289 + 0 NA intron (ENSMUSG00000097365.7, intron 2 of 2) lincRNA-intron (ENSMUSG00000097365.7, intron 2 of 3) 5036 ENSMUSG00000097365.7 ENSMUSG00000097365 ENSMUST00000181930 C030034L19Rik lincRNA Interval_33810 chr11 118678804 118679766 + 0 NA intron (ENSMUSG00000025576.17, intron 2 of 14) protein_coding-intron (ENSMUSG00000025576.17, intron 2 of 14) -112087 ENSMUSG00000085059.1 ENSMUSG00000085059 ENSMUST00000146016 Gm11750 lincRNA Interval_147499 chr7 67770325 67771124 + 0 NA Intergenic Intergenic 7806 ENSMUSG00000080609.1 ENSMUSG00000080609 ENSMUST00000116959 Gm23844 miRNA Interval_167934 chr9 74701037 74701456 + 0 NA Intergenic Intergenic -8016 ENSMUSG00000098272.1 ENSMUSG00000098272 ENSMUST00000184030 Gm27233 processed_pseudogene Interval_84687 chr19 15193884 15194210 + 0 NA Intergenic Intergenic -233281 ENSMUSG00000063586.1 ENSMUSG00000063586 ENSMUST00000072982 Gm5513 processed_pseudogene Interval_58702 chr15 37221609 37222156 + 0 NA Intergenic Intergenic 11277 ENSMUSG00000089804.2 ENSMUSG00000089804 ENSMUST00000159411 Gm16136 antisense Interval_139028 chr6 94290922 94291583 + 0 NA Intergenic Intergenic 32782 ENSMUSG00000107545.1 ENSMUSG00000107545 ENSMUST00000204466 Gm44307 processed_pseudogene Interval_106412 chr3 95997288 95997613 + 0 NA Intergenic Intergenic -1652 ENSMUSG00000015745.9 ENSMUSG00000015745 ENSMUST00000157043 Plekho1 protein_coding Interval_45711 chr13 57215700 57216265 + 0 NA Intergenic Intergenic -23865 ENSMUSG00000114363.1 ENSMUSG00000114363 ENSMUST00000225562 Gm48174 processed_pseudogene Interval_105583 chr3 87905907 87907790 + 0 NA promoter-TSS (ENSMUSG00000004897.16) protein_coding-promoter-TSS (ENSMUSG00000004897.16) -204 ENSMUSG00000004897.16 ENSMUSG00000004897 ENSMUST00000160312 Hdgf protein_coding Interval_105135 chr3 82333296 82334257 + 0 NA Intergenic Intergenic -46297 ENSMUSG00000033900.13 ENSMUSG00000033900 ENSMUST00000195793 Map9 protein_coding Interval_108592 chr3 129385120 129385643 + 0 NA Intergenic Intergenic 11271 ENSMUSG00000105278.1 ENSMUSG00000105278 ENSMUST00000195908 Gm42630 TEC Interval_36752 chr12 53032661 53033884 + 0 NA intron (ENSMUSG00000061603.8, intron 8 of 11) protein_coding-intron (ENSMUSG00000061603.8, intron 9 of 13) 13554 ENSMUSG00000070192.1 ENSMUSG00000070192 ENSMUST00000093682 n-R5s58 rRNA Interval_95120 chr2 104032217 104032552 + 0 NA intron (ENSMUSG00000027180.12, intron 2 of 9) protein_coding-intron (ENSMUSG00000027180.12, intron 2 of 10) -4023 ENSMUSG00000046085.7 ENSMUSG00000046085 ENSMUST00000138867 4931422A03Rik protein_coding Interval_24448 chr11 33322089 33322369 + 0 NA intron (ENSMUSG00000040594.19, intron 5 of 9) protein_coding-intron (ENSMUSG00000040594.19, intron 16 of 27) -45492 ENSMUSG00000098456.1 ENSMUSG00000098456 ENSMUST00000183831 Gm12117 protein_coding Interval_55695 chr14 99075305 99076274 + 0 NA TTS (ENSMUSG00000033166.11) protein_coding-TTS (ENSMUSG00000033166.11) 2894 ENSMUSG00000033166.11 ENSMUSG00000033166 ENSMUST00000227001 Dis3 protein_coding Interval_117386 chr4 123386659 123387172 + 0 NA intron (ENSMUSG00000028649.21, intron 3 of 7) protein_coding-intron (ENSMUSG00000028649.21, intron 63 of 92) -44112 ENSMUSG00000032726.12 ENSMUSG00000032726 ENSMUST00000040496 Bmp8a protein_coding Interval_56171 chr14 110187720 110188155 + 0 NA Intergenic Intergenic 26102 ENSMUSG00000065102.1 ENSMUSG00000065102 ENSMUST00000083168 n-R5s50 rRNA Interval_23446 chr11 22677270 22677624 + 0 NA Intergenic Intergenic -50783 ENSMUSG00000083008.1 ENSMUSG00000083008 ENSMUST00000119022 Gm12053 processed_pseudogene Interval_157461 chr8 70510117 70510957 + 0 NA promoter-TSS (ENSMUSG00000090137.8) protein_coding-promoter-TSS (ENSMUSG00000090137.8) -914 ENSMUSG00000090137.8 ENSMUSG00000090137 ENSMUST00000124967 Uba52 protein_coding Interval_92857 chr2 66819906 66820334 + 0 NA Intergenic Intergenic -35206 ENSMUSG00000034810.7 ENSMUSG00000034810 ENSMUST00000042792 Scn7a protein_coding Interval_99480 chr2 162244267 162245028 + 0 NA intron (ENSMUSG00000053141.16, intron 5 of 29) protein_coding-intron (ENSMUSG00000053141.16, intron 5 of 30) -146166 ENSMUSG00000084919.1 ENSMUSG00000084919 ENSMUST00000151688 Ptprtos antisense Interval_167264 chr9 66874168 66874446 + 0 NA intron (ENSMUSG00000036943.9, intron 1 of 7) protein_coding-intron (ENSMUSG00000036943.9, intron 1 of 7) -39581 ENSMUSG00000053040.13 ENSMUSG00000053040 ENSMUST00000057261 Aph1c protein_coding Interval_18559 chr10 87649016 87649726 + 0 NA Intergenic Intergenic -39207 ENSMUSG00000112536.1 ENSMUSG00000112536 ENSMUST00000218613 Gm48195 processed_pseudogene Interval_84001 chr19 6028284 6031231 + 0 NA Intergenic Intergenic -1892 ENSMUSG00000118194.1 ENSMUSG00000118194 ENSMUST00000236073 Gm19505 processed_pseudogene Interval_123664 chr5 34374820 34375076 + 0 NA intron (ENSMUSG00000037210.16, intron 1 of 20) protein_coding-intron (ENSMUSG00000037210.16, intron 1 of 20) 23832 ENSMUSG00000029110.13 ENSMUSG00000029110 ENSMUST00000183265 Rnf4 protein_coding Interval_89689 chr2 24622810 24623690 + 0 NA intron (ENSMUSG00000004113.18, intron 3 of 8) protein_coding-intron (ENSMUSG00000004113.18, intron 38 of 46) 8774 ENSMUSG00000004113.18 ENSMUSG00000004113 ENSMUST00000124183 Cacna1b protein_coding Interval_32030 chr11 104571293 104572648 + 0 NA promoter-TSS (ENSMUSG00000082706.1) processed_pseudogene-promoter-TSS (ENSMUSG00000082706.1) -413 ENSMUSG00000082706.1 ENSMUSG00000082706 ENSMUST00000117888 Gm11663 processed_pseudogene Interval_71497 chr17 24162754 24164000 + 0 NA TTS (ENSMUSG00000024121.13) protein_coding-TTS (ENSMUSG00000024121.13) -5342 ENSMUSG00000036820.12 ENSMUSG00000036820 ENSMUST00000131766 Amdhd2 protein_coding Interval_12856 chr10 6749175 6749662 + 0 NA intron (ENSMUSG00000078488.1, intron 1 of 1) protein_coding-intron (ENSMUSG00000078488.1, intron 1 of 1) 12343 ENSMUSG00000078488.1 ENSMUSG00000078488 ENSMUST00000105596 Gm10945 protein_coding Interval_13645 chr10 20371971 20372604 + 0 NA Intergenic Intergenic -6850 ENSMUSG00000111351.1 ENSMUSG00000111351 ENSMUST00000213596 Gm48537 processed_pseudogene Interval_9927 chr1 164151038 164152082 + 0 NA promoter-TSS (ENSMUSG00000026579.8) protein_coding-promoter-TSS (ENSMUSG00000026579.8) -278 ENSMUSG00000026579.8 ENSMUSG00000026579 ENSMUST00000086040 F5 protein_coding Interval_1874 chr1 34243530 34243777 + 0 NA intron (ENSMUSG00000026131.20, intron 2 of 22) protein_coding-intron (ENSMUSG00000026131.20, intron 58 of 97) 27475 ENSMUSG00000103001.1 ENSMUSG00000103001 ENSMUST00000194920 A930005N03Rik TEC Interval_172755 chrX 48318295 48318847 + 0 NA Intergenic Intergenic 11528 ENSMUSG00000088918.1 ENSMUSG00000088918 ENSMUST00000158293 Gm22612 snRNA Interval_88410 chr2 4900273 4901447 + 0 NA intron (ENSMUSG00000026662.13, intron 5 of 5) protein_coding-intron (ENSMUSG00000026662.13, intron 7 of 8) 16803 ENSMUSG00000026662.13 ENSMUSG00000026662 ENSMUST00000140045 Sephs1 protein_coding Interval_6117 chr1 97558922 97559133 + 0 NA intron (ENSMUSG00000101348.6, intron 4 of 4) transcribed_unprocessed_pseudogene-intron (ENSMUSG00000101348.6, intron 4 of 4) -13579 ENSMUSG00000103179.1 ENSMUSG00000103179 ENSMUST00000192636 Gm37171 TEC Interval_76619 chr17 82704164 82704471 + 0 NA Intergenic Intergenic 165057 ENSMUSG00000073371.4 ENSMUSG00000073371 ENSMUST00000097278 Gm6594 processed_pseudogene Interval_163003 chr9 14387833 14388195 + 0 NA intron (ENSMUSG00000111786.1, intron 2 of 2) lincRNA-intron (ENSMUSG00000111786.1, intron 2 of 2) 2322 ENSMUSG00000111786.1 ENSMUSG00000111786 ENSMUST00000215810 Gm47319 lincRNA Interval_95988 chr2 118975959 118976919 + 0 NA Intergenic Intergenic -20629 ENSMUSG00000084802.1 ENSMUSG00000084802 ENSMUST00000130025 Gm14089 antisense Interval_58849 chr15 38576677 38577358 + 0 NA promoter-TSS (ENSMUSG00000115491.1) processed_pseudogene-promoter-TSS (ENSMUSG00000115491.1) -368 ENSMUSG00000115491.1 ENSMUSG00000115491 ENSMUST00000227335 Siah1-ps2 processed_pseudogene Interval_47025 chr13 74439638 74440687 + 0 NA promoter-TSS (ENSMUSG00000113212.1) processed_pseudogene-promoter-TSS (ENSMUSG00000113212.1) -4 ENSMUSG00000113212.1 ENSMUSG00000113212 ENSMUST00000221116 Gm47435 processed_pseudogene Interval_90588 chr2 31297765 31298560 + 0 NA Intergenic Intergenic -16253 ENSMUSG00000055632.18 ENSMUSG00000055632 ENSMUST00000141294 Hmcn2 protein_coding Interval_73063 chr17 34555378 34555950 + 0 NA Intergenic Intergenic -8013 ENSMUSG00000061728.5 ENSMUSG00000061728 ENSMUST00000023469 Btnl7-ps unprocessed_pseudogene Interval_13352 chr10 16717910 16718138 + 0 NA Intergenic Intergenic -50916 ENSMUSG00000112903.1 ENSMUSG00000112903 ENSMUST00000219627 Gm5948 processed_pseudogene Interval_12772 chr10 5204767 5205266 + 0 NA exon (ENSMUSG00000096054.3, exon 88 of 146) protein_coding-exon (ENSMUSG00000096054.3, exon 88 of 146) -19490 ENSMUSG00000096054.3 ENSMUSG00000096054 ENSMUST00000214945 Syne1 protein_coding Interval_86600 chr19 41974039 41975818 + 0 NA promoter-TSS (ENSMUSG00000089102.1) snRNA-promoter-TSS (ENSMUSG00000089102.1) -260 ENSMUSG00000089102.1 ENSMUSG00000089102 ENSMUST00000158477 Gm23113 snRNA Interval_165461 chr9 48450070 48450398 + 0 NA promoter-TSS (ENSMUSG00000063543.5) processed_pseudogene-promoter-TSS (ENSMUSG00000063543.5) -166 ENSMUSG00000063543.5 ENSMUSG00000063543 ENSMUST00000165252 Gm5616 processed_pseudogene Interval_26595 chr11 59099714 59099899 + 0 NA exon (ENSMUSG00000061462.18, exon 17 of 90) protein_coding-exon (ENSMUSG00000061462.18, exon 17 of 90) 36569 ENSMUSG00000061462.18 ENSMUSG00000061462 ENSMUST00000133040 Obscn protein_coding Interval_121725 chr5 5754980 5756297 + 0 NA Intergenic Intergenic -15237 ENSMUSG00000015652.9 ENSMUSG00000015652 ENSMUST00000169542 Steap1 protein_coding Interval_51679 chr14 31316899 31317131 + 0 NA intron (ENSMUSG00000019027.8, intron 3 of 77) protein_coding-intron (ENSMUSG00000019027.8, intron 3 of 77) -6940 ENSMUSG00000115468.1 ENSMUSG00000115468 ENSMUST00000226148 Gm49217 lincRNA Interval_113231 chr4 50780974 50781171 + 0 NA Intergenic Intergenic -409035 ENSMUSG00000084116.1 ENSMUSG00000084116 ENSMUST00000117147 Gm12460 processed_pseudogene Interval_38837 chr12 83201685 83202266 + 0 NA Intergenic Intergenic 79761 ENSMUSG00000103387.1 ENSMUSG00000103387 ENSMUST00000192978 1700030I03Rik TEC Interval_116057 chr4 107305017 107305581 + 0 NA intron (ENSMUSG00000034785.14, intron 1 of 1) protein_coding-intron (ENSMUSG00000034785.14, intron 1 of 3) 1843 ENSMUSG00000034785.14 ENSMUSG00000034785 ENSMUST00000145332 Dio1 protein_coding Interval_169152 chr9 94655793 94656566 + 0 NA Intergenic Intergenic 12160 ENSMUSG00000089551.1 ENSMUSG00000089551 ENSMUST00000158926 Gm24178 snRNA Interval_95151 chr2 104359016 104359556 + 0 NA intron (ENSMUSG00000068373.15, intron 1 of 20) protein_coding-intron (ENSMUSG00000068373.15, intron 1 of 20) 51727 ENSMUSG00000068373.15 ENSMUSG00000068373 ENSMUST00000149165 D430041D05Rik protein_coding Interval_20589 chr10 119239124 119240734 + 0 NA promoter-TSS (ENSMUSG00000020114.12) protein_coding-promoter-TSS (ENSMUSG00000020114.12) -27320 ENSMUSG00000020114.12 ENSMUSG00000020114 ENSMUST00000126373 Cand1 protein_coding Interval_16395 chr10 62717278 62717612 + 0 NA intron (ENSMUSG00000036923.12, intron 1 of 3) protein_coding-intron (ENSMUSG00000036923.12, intron 2 of 3) 8356 ENSMUSG00000036923.12 ENSMUSG00000036923 ENSMUST00000126979 Stox1 protein_coding Interval_103523 chr3 46651467 46651864 + 0 NA Intergenic Intergenic 30544 ENSMUSG00000102589.1 ENSMUSG00000102589 ENSMUST00000195318 Gm37445 processed_pseudogene Interval_120973 chr4 152008375 152010430 + 0 NA exon (ENSMUSG00000073700.3, exon 1 of 4) protein_coding-exon (ENSMUSG00000073700.3, exon 1 of 4) 217 ENSMUSG00000108391.1 ENSMUSG00000108391 ENSMUST00000206007 Gm9768 TEC Interval_71907 chr17 26932423 26933597 + 0 NA promoter-TSS (ENSMUSG00000024193.8) protein_coding-promoter-TSS (ENSMUSG00000024193.8) -121 ENSMUSG00000024193.8 ENSMUSG00000024193 ENSMUST00000237412 Phf1 protein_coding Interval_113631 chr4 57129125 57130630 + 0 NA intron (ENSMUSG00000028434.12, intron 1 of 25) protein_coding-intron (ENSMUSG00000028434.12, intron 1 of 15) -42194 ENSMUSG00000085967.1 ENSMUSG00000085967 ENSMUST00000152074 Gm12530 antisense Interval_44125 chr13 41037139 41037578 + 0 NA intron (ENSMUSG00000021363.14, intron 1 of 3) protein_coding-intron (ENSMUSG00000021363.14, intron 10 of 12) 2413 ENSMUSG00000021363.14 ENSMUSG00000021363 ENSMUST00000224423 Mak protein_coding Interval_145209 chr7 30664654 30665630 + 0 NA promoter-TSS (ENSMUSG00000078762.10) protein_coding-promoter-TSS (ENSMUSG00000078762.10) -205 ENSMUSG00000094365.1 ENSMUSG00000094365 ENSMUST00000146232 Gm21982 processed_transcript Interval_56712 chr14 121572442 121572676 + 0 NA intron (ENSMUSG00000025558.19, intron 45 of 55) protein_coding-intron (ENSMUSG00000025558.19, intron 46 of 53) 49015 ENSMUSG00000115408.1 ENSMUSG00000115408 ENSMUST00000226518 Gm4529 processed_pseudogene Interval_148247 chr7 80074976 80076145 + 0 NA promoter-TSS (ENSMUSG00000108714.1) antisense-promoter-TSS (ENSMUSG00000108714.1) -313 ENSMUSG00000108714.1 ENSMUSG00000108714 ENSMUST00000206022 Gm21057 antisense Interval_132461 chr5 145098445 145098729 + 0 NA intron (ENSMUSG00000029621.14, intron 5 of 10) protein_coding-intron (ENSMUSG00000029621.14, intron 5 of 9) 2330 ENSMUSG00000029621.14 ENSMUSG00000029621 ENSMUST00000142276 Arpc1a protein_coding Interval_145467 chr7 34981905 34982591 + 0 NA intron (ENSMUSG00000063931.14, intron 5 of 6) protein_coding-intron (ENSMUSG00000063931.14, intron 9 of 14) 12738 ENSMUSG00000063931.14 ENSMUSG00000063931 ENSMUST00000160459 Pepd protein_coding Interval_75892 chr17 72807193 72807741 + 0 NA Intergenic Intergenic -30069 ENSMUSG00000039770.6 ENSMUSG00000039770 ENSMUST00000233662 Ypel5 protein_coding Interval_169161 chr9 94700765 94701084 + 0 NA intron (ENSMUSG00000089709.1, intron 1 of 1) protein_coding-intron (ENSMUSG00000031129.9, intron 2 of 15) 1395 ENSMUSG00000089709.1 ENSMUSG00000089709 ENSMUST00000162306 Gm16262 antisense Interval_128964 chr5 116341699 116342048 + 0 NA Intergenic Intergenic 29513 ENSMUSG00000086715.1 ENSMUSG00000086715 ENSMUST00000128473 B230112J18Rik lincRNA Interval_156301 chr8 47221547 47222643 + 0 NA intron (ENSMUSG00000038143.16, intron 2 of 5) protein_coding-intron (ENSMUSG00000038143.16, intron 1 of 3) 5071 ENSMUSG00000109606.1 ENSMUSG00000109606 ENSMUST00000211539 Gm45537 TEC Interval_136718 chr6 58542878 58543693 + 0 NA Intergenic Intergenic -21475 ENSMUSG00000107960.1 ENSMUSG00000107960 ENSMUST00000204999 Gm35077 lincRNA Interval_162228 chr8 126221281 126222376 + 0 NA intron (ENSMUSG00000057060.8, intron 1 of 5) protein_coding-intron (ENSMUSG00000057060.8, intron 1 of 5) 82833 ENSMUSG00000057060.8 ENSMUSG00000057060 ENSMUST00000108759 Slc35f3 protein_coding Interval_107805 chr3 115615451 115616461 + 0 NA Intergenic Intergenic 97380 ENSMUSG00000105829.1 ENSMUSG00000105829 ENSMUST00000198229 Gm43669 processed_pseudogene Interval_87582 chr19 53575385 53575632 + 0 NA Intergenic Intergenic 13560 ENSMUSG00000071497.4 ENSMUSG00000071497 ENSMUST00000095978 Nutf2-ps1 protein_coding Interval_41030 chr12 110698007 110698308 + 0 NA intron (ENSMUSG00000021270.13, intron 1 of 3) protein_coding-intron (ENSMUSG00000021270.13, intron 1 of 3) 4571 ENSMUSG00000021270.13 ENSMUSG00000021270 ENSMUST00000149189 Hsp90aa1 protein_coding Interval_164844 chr9 42416292 42417384 + 0 NA intron (ENSMUSG00000037287.15, intron 7 of 7) protein_coding-intron (ENSMUSG00000037287.15, intron 7 of 7) -17111 ENSMUSG00000037705.13 ENSMUSG00000037705 ENSMUST00000160940 Tecta protein_coding Interval_121005 chr4 152165028 152166018 + 0 NA Intergenic Intergenic 5974 ENSMUSG00000028940.2 ENSMUSG00000028940 ENSMUST00000138991 Hes2 protein_coding Interval_150874 chr7 116117790 116118224 + 0 NA Intergenic Intergenic 11518 ENSMUSG00000045659.18 ENSMUSG00000045659 ENSMUST00000205446 Plekha7 protein_coding Interval_7552 chr1 132165931 132166383 + 0 NA Intergenic Intergenic -25300 ENSMUSG00000118219.1 ENSMUSG00000118219 ENSMUST00000188175 Gm29695 protein_coding Interval_170591 chr9 109105101 109105825 + 0 NA promoter-TSS (ENSMUSG00000053646.13) protein_coding-promoter-TSS (ENSMUSG00000053646.13) -38 ENSMUSG00000053646.13 ENSMUSG00000053646 ENSMUST00000194734 Plxnb1 protein_coding Interval_108643 chr3 129730204 129730771 + 0 NA intron (ENSMUSG00000106120.1, intron 1 of 1) protein_coding-intron (ENSMUSG00000028017.7, intron 5 of 23) 1642 ENSMUSG00000106120.1 ENSMUSG00000106120 ENSMUST00000198992 Gm42697 antisense Interval_134002 chr6 17662346 17663045 + 0 NA intron (ENSMUSG00000015733.13, intron 2 of 3) protein_coding-intron (ENSMUSG00000015733.13, intron 8 of 9) 25660 ENSMUSG00000015733.13 ENSMUSG00000015733 ENSMUST00000142592 Capza2 protein_coding Interval_56046 chr14 105127498 105128445 + 0 NA intron (ENSMUSG00000022119.15, intron 2 of 5) protein_coding-intron (ENSMUSG00000022119.15, intron 18 of 21) 2366 ENSMUSG00000022119.15 ENSMUSG00000022119 ENSMUST00000163499 Rbm26 protein_coding Interval_41714 chr12 118228050 118228238 + 0 NA Intergenic Intergenic 6420 ENSMUSG00000113831.1 ENSMUSG00000113831 ENSMUST00000220671 Gm49602 lincRNA Interval_3623 chr1 60073544 60073796 + 0 NA exon (ENSMUSG00000026019.15, exon 13 of 13) protein_coding-exon (ENSMUSG00000026019.15, exon 13 of 13) 12092 ENSMUSG00000026019.15 ENSMUSG00000026019 ENSMUST00000133767 Wdr12 protein_coding Interval_115511 chr4 99603597 99604094 + 0 NA Intergenic Intergenic 12677 ENSMUSG00000083698.1 ENSMUSG00000083698 ENSMUST00000119752 Gm12687 processed_pseudogene Interval_121497 chr4 156192356 156193533 + 0 NA intron (ENSMUSG00000041936.18, intron 2 of 35) protein_coding-intron (ENSMUSG00000041936.18, intron 2 of 35) -6837 ENSMUSG00000041936.18 ENSMUSG00000041936 ENSMUST00000144749 Agrn protein_coding Interval_28143 chr11 73144012 73144579 + 0 NA intron (ENSMUSG00000005947.11, intron 29 of 30) protein_coding-intron (ENSMUSG00000005947.11, intron 29 of 30) -6001 ENSMUSG00000050107.2 ENSMUSG00000050107 ENSMUST00000052140 Haspin protein_coding Interval_52285 chr14 43919882 43920263 + 0 NA Intergenic Intergenic 3296 ENSMUSG00000090166.2 ENSMUSG00000090166 ENSMUST00000163652 Ear10 protein_coding Interval_74818 chr17 56716381 56718158 + 0 NA promoter-TSS (ENSMUSG00000002379.7) protein_coding-promoter-TSS (ENSMUSG00000002379.7) -514 ENSMUSG00000002379.7 ENSMUSG00000002379 ENSMUST00000233233 Ndufa11 protein_coding Interval_72110 chr17 28087450 28089557 + 0 NA Intergenic Intergenic -8208 ENSMUSG00000117120.1 ENSMUSG00000117120 ENSMUST00000141806 Gm50238 processed_transcript Interval_165035 chr9 44066773 44068139 + 0 NA intron (ENSMUSG00000111409.1, intron 1 of 1) protein_coding-intron (ENSMUSG00000032010.15, intron 1 of 12) 4012 ENSMUSG00000111415.1 ENSMUSG00000111415 ENSMUST00000216448 Gm39325 antisense Interval_12193 chr1 190761950 190762269 + 0 NA intron (ENSMUSG00000089872.10, intron 6 of 12) protein_coding-intron (ENSMUSG00000089872.10, intron 6 of 12) 137608 ENSMUSG00000089872.10 ENSMUSG00000089872 ENSMUST00000159066 Rps6kc1 protein_coding Interval_37891 chr12 72825489 72825814 + 0 NA Intergenic Intergenic 7939 ENSMUSG00000113779.1 ENSMUSG00000113779 ENSMUST00000222961 Gm33785 lincRNA Interval_161689 chr8 122068396 122068872 + 0 NA intron (ENSMUSG00000092329.1, intron 1 of 15) protein_coding-intron (ENSMUSG00000092329.1, intron 1 of 15) 90610 ENSMUSG00000099140.1 ENSMUSG00000099140 ENSMUST00000184699 Mir7237 miRNA Interval_140091 chr6 114062398 114062761 + 0 NA TTS (ENSMUSG00000107474.1) processed_pseudogene-TTS (ENSMUSG00000107474.1) 383 ENSMUSG00000107474.1 ENSMUSG00000107474 ENSMUST00000204499 Gm43932 processed_pseudogene Interval_135049 chr6 34954920 34956346 + 0 NA intron (ENSMUSG00000029847.13, intron 6 of 11) protein_coding-intron (ENSMUSG00000029847.13, intron 5 of 7) 32771 ENSMUSG00000029847.13 ENSMUSG00000029847 ENSMUST00000144079 Slc23a4 protein_coding Interval_33437 chr11 116532341 116534742 + 0 NA promoter-TSS (ENSMUSG00000061878.16) protein_coding-promoter-TSS (ENSMUSG00000061878.16) -464 ENSMUSG00000100779.1 ENSMUSG00000100779 ENSMUST00000186169 Gm29292 antisense Interval_154874 chr8 24554087 24555057 + 0 NA promoter-TSS (ENSMUSG00000031549.16) protein_coding-promoter-TSS (ENSMUSG00000031549.16) 25 ENSMUSG00000031549.16 ENSMUSG00000031549 ENSMUST00000138155 Ido2 protein_coding Interval_174573 chrX 159254126 159257020 + 0 NA promoter-TSS (ENSMUSG00000031309.15) protein_coding-promoter-TSS (ENSMUSG00000031309.15) -20703 ENSMUSG00000031309.15 ENSMUSG00000031309 ENSMUST00000149939 Rps6ka3 protein_coding Interval_144179 chr7 19822614 19824875 + 0 NA promoter-TSS (ENSMUSG00000053175.17) protein_coding-promoter-TSS (ENSMUSG00000053175.17) 7191 ENSMUSG00000087593.1 ENSMUSG00000087593 ENSMUST00000137373 Gm16174 antisense Interval_21120 chr10 126678406 126679479 + 0 NA Intergenic Intergenic 14944 ENSMUSG00000112208.1 ENSMUSG00000112208 ENSMUST00000219762 Gm40797 lincRNA Interval_110189 chr3 154092217 154092559 + 0 NA intron (ENSMUSG00000028360.10, intron 1 of 21) protein_coding-intron (ENSMUSG00000028360.10, intron 1 of 21) -39952 ENSMUSG00000090114.1 ENSMUSG00000090114 ENSMUST00000161613 Gm3076 processed_pseudogene Interval_52849 chr14 51069805 51070061 + 0 NA TTS (ENSMUSG00000035932.6) protein_coding-TTS (ENSMUSG00000035932.6) 4502 ENSMUSG00000035932.6 ENSMUSG00000035932 ENSMUST00000048478 Olfr750 protein_coding Interval_46004 chr13 59948750 59950139 + 0 NA Intergenic Intergenic 30006 ENSMUSG00000114308.1 ENSMUSG00000114308 ENSMUST00000225115 Gm48390 processed_pseudogene Interval_79771 chr18 35042949 35043962 + 0 NA intron (ENSMUSG00000118380.1, intron 3 of 3) processed_transcript-intron (ENSMUSG00000118380.1, intron 4 of 5) 44168 ENSMUSG00000117727.1 ENSMUSG00000117727 ENSMUST00000238134 Gm3587 lincRNA Interval_99954 chr2 166080201 166081066 + 0 NA intron (ENSMUSG00000006800.14, intron 15 of 21) protein_coding-intron (ENSMUSG00000006800.14, intron 14 of 20) 32715 ENSMUSG00000027678.17 ENSMUSG00000027678 ENSMUST00000139394 Ncoa3 protein_coding Interval_14956 chr10 41456379 41456657 + 0 NA TTS (ENSMUSG00000019826.11) protein_coding-TTS (ENSMUSG00000019826.11) 6083 ENSMUSG00000019826.11 ENSMUSG00000019826 ENSMUST00000215881 Zbtb24 protein_coding Interval_83517 chr18 88747248 88747732 + 0 NA intron (ENSMUSG00000056153.15, intron 6 of 7) protein_coding-intron (ENSMUSG00000056153.15, intron 6 of 7) -79560 ENSMUSG00000117887.1 ENSMUSG00000117887 ENSMUST00000236521 Gm50404 processed_pseudogene Interval_40608 chr12 106010016 106010785 + 0 NA promoter-TSS (ENSMUSG00000021115.15) protein_coding-promoter-TSS (ENSMUSG00000021115.15) -15407 ENSMUSG00000021115.15 ENSMUSG00000021115 ENSMUST00000220629 Vrk1 protein_coding Interval_69846 chr16 97495995 97496646 + 0 NA intron (ENSMUSG00000022938.8, intron 1 of 6) protein_coding-intron (ENSMUSG00000022938.8, intron 2 of 7) 2702 ENSMUSG00000088269.1 ENSMUSG00000088269 ENSMUST00000157644 Gm24777 rRNA Interval_18579 chr10 88153524 88154126 + 0 NA intron (ENSMUSG00000035351.16, intron 3 of 9) protein_coding-intron (ENSMUSG00000035351.16, intron 3 of 9) 6798 ENSMUSG00000035351.16 ENSMUSG00000035351 ENSMUST00000219059 Nup37 protein_coding Interval_156472 chr8 48504610 48505286 + 0 NA intron (ENSMUSG00000031561.16, intron 2 of 26) protein_coding-intron (ENSMUSG00000031561.16, intron 2 of 28) 50365 ENSMUSG00000031561.16 ENSMUSG00000031561 ENSMUST00000211812 Tenm3 protein_coding Interval_114709 chr4 84152438 84152840 + 0 NA Intergenic Intergenic -22350 ENSMUSG00000087378.1 ENSMUSG00000087378 ENSMUST00000150794 Gm12414 lincRNA Interval_104001 chr3 56895858 56896736 + 0 NA Intergenic Intergenic -67510 ENSMUSG00000105113.1 ENSMUSG00000105113 ENSMUST00000200018 Gm2622 processed_pseudogene Interval_17692 chr10 79568323 79568614 + 0 NA Intergenic Intergenic 11652 ENSMUSG00000020317.14 ENSMUSG00000020317 ENSMUST00000020566 Theg protein_coding Interval_75768 chr17 71191561 71192072 + 0 NA intron (ENSMUSG00000024052.17, intron 1 of 19) protein_coding-intron (ENSMUSG00000024052.17, intron 1 of 19) 8260 ENSMUSG00000024052.17 ENSMUSG00000024052 ENSMUST00000125665 Lpin2 protein_coding Interval_64410 chr16 11202216 11203980 + 0 NA promoter-TSS (ENSMUSG00000097537.2) antisense-promoter-TSS (ENSMUSG00000097537.2) 137 ENSMUSG00000005846.12 ENSMUSG00000005846 ENSMUST00000230232 Rsl1d1 protein_coding Interval_78316 chr18 11927569 11928081 + 0 NA intron (ENSMUSG00000040957.15, intron 6 of 8) protein_coding-intron (ENSMUSG00000040957.15, intron 6 of 8) 14694 ENSMUSG00000117430.1 ENSMUSG00000117430 ENSMUST00000234828 Gm49968 TEC Interval_32092 chr11 105213930 105214826 + 0 NA intron (ENSMUSG00000020694.17, intron 3 of 6) protein_coding-intron (ENSMUSG00000020694.17, intron 5 of 20) 5525 ENSMUSG00000020694.17 ENSMUSG00000020694 ENSMUST00000146910 Tlk2 protein_coding Interval_109977 chr3 152278186 152278441 + 0 NA intron (ENSMUSG00000054942.13, intron 15 of 15) protein_coding-intron (ENSMUSG00000054942.13, intron 13 of 13) -12545 ENSMUSG00000039103.12 ENSMUSG00000039103 ENSMUST00000199752 Nexn protein_coding Interval_117442 chr4 123707466 123707764 + 0 NA Intergenic Intergenic 2412 ENSMUSG00000081170.1 ENSMUSG00000081170 ENSMUST00000120626 Gm12922 processed_pseudogene Interval_97020 chr2 130577778 130578397 + 0 NA Intergenic Intergenic 1914 ENSMUSG00000027301.7 ENSMUSG00000027301 ENSMUST00000028764 Oxt protein_coding Interval_24704 chr11 35999810 36000220 + 0 NA Intergenic Intergenic 3961 ENSMUSG00000081571.1 ENSMUSG00000081571 ENSMUST00000117261 Gm12125 processed_pseudogene Interval_119629 chr4 138851143 138851752 + 0 NA intron (ENSMUSG00000041193.15, intron 1 of 5) protein_coding-intron (ENSMUSG00000041193.15, intron 1 of 5) 18188 ENSMUSG00000058908.14 ENSMUSG00000058908 ENSMUST00000147728 Pla2g2a polymorphic_pseudogene Interval_124938 chr5 61159775 61160142 + 0 NA Intergenic Intergenic 178775 ENSMUSG00000106370.2 ENSMUSG00000106370 ENSMUST00000198954 Gm43382 processed_pseudogene Interval_63207 chr15 99744064 99744379 + 0 NA intron (ENSMUSG00000023021.15, intron 2 of 6) protein_coding-intron (ENSMUSG00000023021.15, intron 4 of 9) 2849 ENSMUSG00000023021.15 ENSMUSG00000023021 ENSMUST00000176627 Cers5 protein_coding Interval_31125 chr11 98313630 98314300 + 0 NA Intergenic Intergenic 15683 ENSMUSG00000038255.6 ENSMUSG00000038255 ENSMUST00000041685 Neurod2 protein_coding Interval_134906 chr6 33415519 33416250 + 0 NA intron (ENSMUSG00000029763.17, intron 2 of 4) protein_coding-intron (ENSMUSG00000029763.17, intron 7 of 17) -17124 ENSMUSG00000107358.1 ENSMUSG00000107358 ENSMUST00000201039 Gm43168 TEC Interval_92176 chr2 55306188 55306624 + 0 NA Intergenic Intergenic 14341 ENSMUSG00000082301.1 ENSMUSG00000082301 ENSMUST00000117686 Gm14032 processed_pseudogene Interval_77735 chr17 94774157 94774930 + 0 NA intron (ENSMUSG00000098090.8, intron 11 of 11) transcribed_unprocessed_pseudogene-intron (ENSMUSG00000098090.8, intron 9 of 9) 9718 ENSMUSG00000088591.1 ENSMUSG00000088591 ENSMUST00000157966 Gm23964 rRNA Interval_26487 chr11 58119279 58119703 + 0 NA TTS (ENSMUSG00000020515.13) protein_coding-TTS (ENSMUSG00000020515.13) -6577 ENSMUSG00000087629.1 ENSMUSG00000087629 ENSMUST00000129126 Gm12246 antisense Interval_89352 chr2 19657266 19659142 + 0 NA exon (ENSMUSG00000043415.5, exon 1 of 1) protein_coding-exon (ENSMUSG00000043415.5, exon 1 of 1) 452 ENSMUSG00000043415.5 ENSMUSG00000043415 ENSMUST00000052168 Otud1 protein_coding Interval_37349 chr12 65364173 65364872 + 0 NA Intergenic Intergenic 41448 ENSMUSG00000077590.1 ENSMUSG00000077590 ENSMUST00000104402 Gm26015 snoRNA Interval_813 chr1 11619625 11619925 + 0 NA intron (ENSMUSG00000057715.13, intron 7 of 12) protein_coding-intron (ENSMUSG00000057715.13, intron 7 of 13) -11375 ENSMUSG00000099845.1 ENSMUSG00000099845 ENSMUST00000188880 Gm29273 processed_pseudogene Interval_16352 chr10 62410772 62412117 + 0 NA intron (ENSMUSG00000020080.8, intron 1 of 1) protein_coding-intron (ENSMUSG00000020080.8, intron 4 of 17) 10964 ENSMUSG00000020080.8 ENSMUSG00000020080 ENSMUST00000159579 Hkdc1 protein_coding Interval_148692 chr7 84184698 84185519 + 0 NA intron (ENSMUSG00000097016.2, intron 2 of 4) bidirectional_promoter_lncRNA-intron (ENSMUSG00000097016.2, intron 2 of 3) 14543 ENSMUSG00000092743.1 ENSMUSG00000092743 ENSMUST00000175002 Gm22177 snRNA Interval_68999 chr16 90021241 90021541 + 0 NA intron (ENSMUSG00000002489.16, intron 2 of 11) protein_coding-intron (ENSMUSG00000002489.16, intron 2 of 11) -68592 ENSMUSG00000116536.1 ENSMUSG00000116536 ENSMUST00000232386 Gm2805 processed_pseudogene Interval_131562 chr5 138135231 138135792 + 0 NA Intergenic Intergenic 17388 ENSMUSG00000037007.17 ENSMUSG00000037007 ENSMUST00000132318 Zfp113 protein_coding Interval_13592 chr10 20029756 20031285 + 0 NA intron (ENSMUSG00000071369.11, intron 6 of 28) protein_coding-intron (ENSMUSG00000071369.11, intron 7 of 29) -94281 ENSMUSG00000071369.11 ENSMUSG00000071369 ENSMUST00000156369 Map3k5 protein_coding Interval_80050 chr18 36961778 36962780 + 0 NA exon (ENSMUSG00000103092.1, exon 1 of 4) protein_coding-exon (ENSMUSG00000103092.1, exon 1 of 4) 1839 ENSMUSG00000103092.1 ENSMUSG00000103092 ENSMUST00000192168 Pcdha5 protein_coding Interval_148058 chr7 78918246 78919243 + 0 NA intron (ENSMUSG00000039236.18, intron 2 of 2) protein_coding-intron (ENSMUSG00000039236.18, intron 3 of 3) 4415 ENSMUSG00000039236.18 ENSMUSG00000039236 ENSMUST00000205981 Isg20 protein_coding Interval_48281 chr13 97692172 97692472 + 0 NA Intergenic Intergenic 55089 ENSMUSG00000054944.7 ENSMUSG00000054944 ENSMUST00000123535 5330416C01Rik lincRNA Interval_14154 chr10 28146857 28147296 + 0 NA intron (ENSMUSG00000019889.10, intron 1 of 2) protein_coding-intron (ENSMUSG00000019889.10, intron 1 of 31) 67045 ENSMUSG00000076377.1 ENSMUSG00000076377 ENSMUST00000102422 Gm22370 miRNA Interval_108963 chr3 133642790 133643081 + 0 NA Intergenic Intergenic -8177 ENSMUSG00000102530.1 ENSMUSG00000102530 ENSMUST00000193574 Gm37228 TEC Interval_67179 chr16 44164456 44166740 + 0 NA Intergenic Intergenic -7799 ENSMUSG00000068284.14 ENSMUSG00000068284 ENSMUST00000169582 Usf3 protein_coding Interval_13601 chr10 20141010 20142338 + 0 NA TTS (ENSMUSG00000071369.11) protein_coding-TTS (ENSMUSG00000071369.11) 16873 ENSMUSG00000071369.11 ENSMUSG00000071369 ENSMUST00000156369 Map3k5 protein_coding Interval_161016 chr8 116934444 116935728 + 0 NA intron (ENSMUSG00000031756.5, intron 6 of 9) protein_coding-intron (ENSMUSG00000031756.5, intron 8 of 11) -8307 ENSMUSG00000047388.10 ENSMUSG00000047388 ENSMUST00000109099 Atmin protein_coding Interval_6624 chr1 118380117 118380368 + 0 NA Intergenic Intergenic 22930 ENSMUSG00000099936.1 ENSMUSG00000099936 ENSMUST00000190194 Gm28867 lincRNA Interval_131488 chr5 137520981 137521251 + 0 NA TTS (ENSMUSG00000029714.11) protein_coding-TTS (ENSMUSG00000029714.11) 2568 ENSMUSG00000029714.11 ENSMUSG00000029714 ENSMUST00000031727 Gigyf1 protein_coding Interval_93250 chr2 71475800 71476151 + 0 NA intron (ENSMUSG00000041921.16, intron 1 of 8) protein_coding-intron (ENSMUSG00000041921.16, intron 1 of 9) -19296 ENSMUSG00000088066.1 ENSMUSG00000088066 ENSMUST00000157441 Gm23253 snRNA Interval_157313 chr8 69216826 69217549 + 0 NA intron (ENSMUSG00000059897.5, intron 1 of 3) protein_coding-intron (ENSMUSG00000059897.5, intron 1 of 2) 8149 ENSMUSG00000059897.5 ENSMUSG00000059897 ENSMUST00000110216 Zfp930 protein_coding Interval_137059 chr6 67043228 67043512 + 0 NA intron (ENSMUSG00000087231.7, intron 1 of 1) processed_transcript-intron (ENSMUSG00000087231.7, intron 1 of 6) -6006 ENSMUSG00000036390.8 ENSMUSG00000036390 ENSMUST00000155041 Gadd45a protein_coding Interval_69827 chr16 97234449 97236516 + 0 NA Intergenic Intergenic -169787 ENSMUSG00000116686.1 ENSMUSG00000116686 ENSMUST00000232315 Gm49681 processed_pseudogene Interval_97296 chr2 133234233 133234777 + 0 NA Intergenic Intergenic 34894 ENSMUSG00000083689.1 ENSMUSG00000083689 ENSMUST00000117717 Gm14094 processed_pseudogene Interval_48461 chr13 99189801 99191269 + 0 NA intron (ENSMUSG00000050919.9, intron 1 of 4) protein_coding-intron (ENSMUSG00000050919.9, intron 1 of 4) 5712 ENSMUSG00000050919.9 ENSMUSG00000050919 ENSMUST00000056558 Zfp366 protein_coding Interval_98000 chr2 146545849 146546162 + 0 NA exon (ENSMUSG00000085796.1, exon 4 of 4) lincRNA-exon (ENSMUSG00000085796.1, exon 4 of 4) 3074 ENSMUSG00000085796.1 ENSMUSG00000085796 ENSMUST00000147212 4933406D12Rik lincRNA Interval_174687 chrX 162946871 162947541 + 0 NA intron (ENSMUSG00000031360.14, intron 2 of 2) protein_coding-intron (ENSMUSG00000031360.14, intron 13 of 18) 17393 ENSMUSG00000040808.4 ENSMUSG00000040808 ENSMUST00000038769 S100g protein_coding Interval_103984 chr3 56157539 56157883 + 0 NA intron (ENSMUSG00000027799.12, intron 1 of 57) protein_coding-intron (ENSMUSG00000027799.12, intron 1 of 57) 9858 ENSMUSG00000105293.1 ENSMUSG00000105293 ENSMUST00000196328 Gm42843 TEC Interval_42364 chr13 12385829 12386894 + 0 NA Intergenic Intergenic 8203 ENSMUSG00000094185.2 ENSMUSG00000094185 ENSMUST00000180224 Gm5445 processed_pseudogene Interval_78907 chr18 21421513 21423239 + 0 NA Intergenic Intergenic -41445 ENSMUSG00000096341.1 ENSMUSG00000096341 ENSMUST00000093714 Gm22886 snRNA Interval_52931 chr14 52103512 52105012 + 0 NA promoter-TSS (ENSMUSG00000060373.15) protein_coding-promoter-TSS (ENSMUSG00000060373.15) -269 ENSMUSG00000060373.15 ENSMUSG00000060373 ENSMUST00000228786 Hnrnpc protein_coding Interval_123348 chr5 31610440 31611070 + 0 NA intron (ENSMUSG00000106918.3, intron 2 of 3) processed_transcript-intron (ENSMUSG00000105617.4, intron 1 of 2) -3217 ENSMUSG00000105617.4 ENSMUSG00000105617 ENSMUST00000202033 Gm43809 processed_transcript Interval_160207 chr8 107118837 107119219 + 0 NA promoter-TSS (ENSMUSG00000102271.1) TEC-promoter-TSS (ENSMUSG00000102271.1) -82 ENSMUSG00000102271.1 ENSMUSG00000102271 ENSMUST00000193420 C630050I24Rik TEC Interval_19332 chr10 96876399 96876799 + 0 NA intron (ENSMUSG00000111912.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000111912.1, intron 1 of 1) -20929 ENSMUSG00000080347.1 ENSMUSG00000080347 ENSMUST00000116697 Gm24587 miRNA Interval_50871 chr14 20347624 20348814 + 0 NA promoter-TSS (ENSMUSG00000021810.3) protein_coding-promoter-TSS (ENSMUSG00000021810.3) -43 ENSMUSG00000039599.16 ENSMUSG00000039599 ENSMUST00000223898 Fam149b protein_coding Interval_70971 chr17 16939342 16940907 + 0 NA Intergenic Intergenic -11428 ENSMUSG00000060149.7 ENSMUSG00000060149 ENSMUST00000071374 BC002059 lincRNA Interval_4304 chr1 72577313 72577916 + 0 NA Intergenic Intergenic -5637 ENSMUSG00000039354.16 ENSMUSG00000039354 ENSMUST00000126832 Smarcal1 protein_coding Interval_62063 chr15 86168273 86168778 + 0 NA intron (ENSMUSG00000035891.16, intron 1 of 12) protein_coding-intron (ENSMUSG00000035891.16, intron 1 of 12) -16077 ENSMUSG00000035891.16 ENSMUSG00000035891 ENSMUST00000156546 Cerk protein_coding Interval_172957 chrX 57916974 57917961 + 0 NA Intergenic Intergenic -72006 ENSMUSG00000093905.1 ENSMUSG00000093905 ENSMUST00000082977 Gm25023 snRNA Interval_79334 chr18 30672263 30672497 + 0 NA Intergenic Intergenic -63490 ENSMUSG00000117526.1 ENSMUSG00000117526 ENSMUST00000235078 Gm41780 processed_pseudogene Interval_75600 chr17 69207969 69208195 + 0 NA intron (ENSMUSG00000024044.19, intron 2 of 21) protein_coding-intron (ENSMUSG00000024044.19, intron 2 of 21) 69126 ENSMUSG00000100572.1 ENSMUSG00000100572 ENSMUST00000187090 2410021H03Rik antisense Interval_89055 chr2 15071984 15072171 + 0 NA exon (ENSMUSG00000017418.14, exon 1 of 1) protein_coding-exon (ENSMUSG00000017418.14, exon 1 of 1) 15364 ENSMUSG00000102258.1 ENSMUSG00000102258 ENSMUST00000195881 Gm38257 TEC Interval_37611 chr12 70326214 70326635 + 0 NA intron (ENSMUSG00000021071.17, intron 1 of 9) protein_coding-intron (ENSMUSG00000021071.17, intron 1 of 11) -21038 ENSMUSG00000112945.1 ENSMUSG00000112945 ENSMUST00000223521 Gm32151 bidirectional_promoter_lncRNA Interval_162307 chr8 126961478 126961688 + 0 NA intron (ENSMUSG00000033931.9, intron 4 of 9) protein_coding-intron (ENSMUSG00000033931.9, intron 5 of 10) 9487 ENSMUSG00000033931.9 ENSMUSG00000033931 ENSMUST00000212583 Rbm34 protein_coding Interval_107106 chr3 103592274 103592498 + 0 NA intron (ENSMUSG00000027849.19, intron 3 of 6) protein_coding-intron (ENSMUSG00000027849.19, intron 3 of 7) -9557 ENSMUSG00000104764.1 ENSMUSG00000104764 ENSMUST00000199589 Gm43066 sense_intronic Interval_34171 chr11 121061990 121062470 + 0 NA intron (ENSMUSG00000039364.13, intron 1 of 3) protein_coding-intron (ENSMUSG00000039364.13, intron 2 of 4) -5867 ENSMUSG00000039364.13 ENSMUSG00000039364 ENSMUST00000150577 Sectm1b protein_coding Interval_56785 chr14 122075412 122076320 + 0 NA intron (ENSMUSG00000115121.1, intron 1 of 4) lincRNA-intron (ENSMUSG00000115121.1, intron 1 of 4) 15360 ENSMUSG00000115121.1 ENSMUSG00000115121 ENSMUST00000226723 Gm49236 lincRNA Interval_161000 chr8 116798946 116799851 + 0 NA Intergenic Intergenic -33919 ENSMUSG00000074072.2 ENSMUSG00000074072 ENSMUST00000098379 Gm10620 pseudogene Interval_19896 chr10 110994622 110995453 + 0 NA intron (ENSMUSG00000035798.14, intron 1 of 16) protein_coding-intron (ENSMUSG00000035798.14, intron 1 of 16) 14958 ENSMUSG00000035798.14 ENSMUSG00000035798 ENSMUST00000218981 Zdhhc17 protein_coding Interval_15817 chr10 57536712 57537265 + 0 NA Intergenic Intergenic -4578 ENSMUSG00000019877.10 ENSMUSG00000019877 ENSMUST00000164400 Serinc1 protein_coding Interval_142964 chr6 147475598 147476902 + 0 NA promoter-TSS (ENSMUSG00000072660.5) antisense-promoter-TSS (ENSMUSG00000072660.5) 422 ENSMUSG00000030301.17 ENSMUSG00000030301 ENSMUST00000111614 Ccdc91 protein_coding Interval_83240 chr18 82940945 82941135 + 0 NA intron (ENSMUSG00000058881.13, intron 1 of 1) protein_coding-intron (ENSMUSG00000058881.13, intron 1 of 5) -20480 ENSMUSG00000118339.1 ENSMUSG00000118339 ENSMUST00000237056 4930592I03Rik processed_transcript Interval_84611 chr19 14416956 14417427 + 0 NA Intergenic Intergenic 178348 ENSMUSG00000024642.17 ENSMUSG00000024642 ENSMUST00000235975 Tle4 protein_coding Interval_159938 chr8 105283057 105283873 + 0 NA exon (ENSMUSG00000014837.15, exon 5 of 7) protein_coding-exon (ENSMUSG00000014837.15, exon 5 of 7) 5585 ENSMUSG00000014837.15 ENSMUSG00000014837 ENSMUST00000212529 4931428F04Rik protein_coding Interval_1740 chr1 33296068 33296498 + 0 NA Intergenic Intergenic 2607 ENSMUSG00000065223.1 ENSMUSG00000065223 ENSMUST00000083289 Gm25792 snRNA Interval_78213 chr18 10208101 10208342 + 0 NA Intergenic Intergenic -8822 ENSMUSG00000117492.1 ENSMUSG00000117492 ENSMUST00000234629 Gm19052 transcribed_processed_pseudogene Interval_136911 chr6 64329739 64330032 + 0 NA intron (ENSMUSG00000071424.10, intron 10 of 15) protein_coding-intron (ENSMUSG00000071424.10, intron 10 of 15) -83763 ENSMUSG00000064775.1 ENSMUSG00000064775 ENSMUST00000082841 Gm25205 snRNA Interval_56072 chr14 105302427 105302665 + 0 NA exon (ENSMUSG00000053253.16, exon 3 of 4) protein_coding-exon (ENSMUSG00000053253.16, exon 3 of 4) -9562 ENSMUSG00000086260.1 ENSMUSG00000086260 ENSMUST00000145241 Gm16259 processed_pseudogene Interval_141669 chr6 133040945 133041143 + 0 NA Intergenic Intergenic -3943 ENSMUSG00000030196.3 ENSMUSG00000030196 ENSMUST00000032317 Tas2r103 protein_coding Interval_117549 chr4 124626751 124627148 + 0 NA intron (ENSMUSG00000098760.1, intron 1 of 1) antisense-intron (ENSMUSG00000098760.1, intron 1 of 1) -29858 ENSMUSG00000090125.3 ENSMUSG00000090125 ENSMUST00000053491 Pou3f1 protein_coding Interval_133051 chr5 149524100 149525650 + 0 NA intron (ENSMUSG00000107132.1, intron 1 of 4) antisense-intron (ENSMUSG00000107132.1, intron 1 of 4) -4858 ENSMUSG00000029658.17 ENSMUSG00000029658 ENSMUST00000202635 Wdr95 protein_coding Interval_23064 chr11 19585487 19586557 + 0 NA Intergenic Intergenic 42039 ENSMUSG00000086911.1 ENSMUSG00000086911 ENSMUST00000146531 Gm12027 lincRNA Interval_117836 chr4 126508738 126509960 + 0 NA intron (ENSMUSG00000042500.11, intron 12 of 17) protein_coding-intron (ENSMUSG00000042500.11, intron 12 of 17) 7563 ENSMUSG00000042500.11 ENSMUSG00000042500 ENSMUST00000122951 Ago4 protein_coding Interval_31344 chr11 100167941 100168144 + 0 NA Intergenic Intergenic -24343 ENSMUSG00000020911.14 ENSMUSG00000020911 ENSMUST00000125888 Krt19 protein_coding Interval_67660 chr16 55783659 55784760 + 0 NA Intergenic Intergenic -5065 ENSMUSG00000088450.1 ENSMUSG00000088450 ENSMUST00000157825 Gm26369 snRNA Interval_121223 chr4 154160132 154161318 + 0 NA promoter-TSS (ENSMUSG00000029030.14) protein_coding-promoter-TSS (ENSMUSG00000029030.14) -559 ENSMUSG00000029030.14 ENSMUSG00000029030 ENSMUST00000133165 Tprgl protein_coding Interval_68651 chr16 83578582 83579679 + 0 NA Intergenic Intergenic 13603 ENSMUSG00000116533.1 ENSMUSG00000116533 ENSMUST00000232058 Gm49561 processed_pseudogene Interval_78653 chr18 16464323 16464729 + 0 NA Intergenic Intergenic -189582 ENSMUSG00000063628.2 ENSMUSG00000063628 ENSMUST00000076710 Gm7665 processed_pseudogene Interval_95568 chr2 112361707 112362012 + 0 NA exon (ENSMUSG00000027130.15, exon 25 of 25) protein_coding-exon (ENSMUSG00000027130.15, exon 25 of 25) 6161 ENSMUSG00000027131.3 ENSMUSG00000027131 ENSMUST00000153967 Emc4 protein_coding Interval_17878 chr10 80552254 80552707 + 0 NA intron (ENSMUSG00000047417.18, intron 1 of 14) protein_coding-intron (ENSMUSG00000047417.18, intron 1 of 14) -5678 ENSMUSG00000047417.18 ENSMUSG00000047417 ENSMUST00000183139 Rexo1 protein_coding Interval_173238 chrX 75095372 75096557 + 0 NA promoter-TSS (ENSMUSG00000031403.14) protein_coding-promoter-TSS (ENSMUSG00000031403.14) -4295 ENSMUSG00000031403.14 ENSMUSG00000031403 ENSMUST00000137286 Dkc1 protein_coding Interval_45850 chr13 58537778 58539359 + 0 NA Intergenic Intergenic -7460 ENSMUSG00000114234.1 ENSMUSG00000114234 ENSMUST00000223882 Gm3131 processed_pseudogene Interval_44901 chr13 49570387 49571118 + 0 NA intron (ENSMUSG00000021391.10, intron 5 of 5) protein_coding-intron (ENSMUSG00000021391.10, intron 5 of 7) -11710 ENSMUSG00000048368.9 ENSMUSG00000048368 ENSMUST00000065494 Omd protein_coding Interval_16183 chr10 61286112 61287572 + 0 NA Intergenic Intergenic -10991 ENSMUSG00000037202.6 ENSMUSG00000037202 ENSMUST00000035419 Prf1 protein_coding Interval_35945 chr12 32297300 32298268 + 0 NA Intergenic Intergenic 51454 ENSMUSG00000112578.1 ENSMUSG00000112578 ENSMUST00000218566 Gm33308 lincRNA Interval_158730 chr8 85592145 85592647 + 0 NA Intergenic Intergenic -7436 ENSMUSG00000110341.1 ENSMUSG00000110341 ENSMUST00000210575 Gm45424 TEC Interval_158436 chr8 83721529 83721859 + 0 NA TTS (ENSMUSG00000005481.18) protein_coding-TTS (ENSMUSG00000005481.18) 2290 ENSMUSG00000098465.1 ENSMUSG00000098465 ENSMUST00000184114 Mir1668 miRNA Interval_157052 chr8 64797732 64799632 + 0 NA intron (ENSMUSG00000031605.8, intron 2 of 5) protein_coding-intron (ENSMUSG00000031605.8, intron 4 of 14) 10456 ENSMUSG00000109879.1 ENSMUSG00000109879 ENSMUST00000210294 Gm10997 TEC Interval_77927 chr18 5645393 5645657 + 0 NA intron (ENSMUSG00000024238.15, intron 2 of 5) protein_coding-intron (ENSMUSG00000024238.15, intron 1 of 7) 31052 ENSMUSG00000080543.1 ENSMUSG00000080543 ENSMUST00000116893 Gm22709 miRNA Interval_92943 chr2 68879351 68879667 + 0 NA intron (ENSMUSG00000027035.10, intron 1 of 10) protein_coding-intron (ENSMUSG00000027035.10, intron 1 of 9) -11857 ENSMUSG00000103233.1 ENSMUSG00000103233 ENSMUST00000192720 Gm37159 TEC Interval_88862 chr2 11753526 11753815 + 0 NA intron (ENSMUSG00000058594.15, intron 3 of 7) protein_coding-intron (ENSMUSG00000058594.15, intron 13 of 20) 23880 ENSMUSG00000058594.15 ENSMUSG00000058594 ENSMUST00000151402 Fbh1 protein_coding Interval_104069 chr3 58135862 58136424 + 0 NA intron (ENSMUSG00000104586.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000104586.1, intron 1 of 1) 27664 ENSMUSG00000100666.1 ENSMUSG00000100666 ENSMUST00000188418 1700007F19Rik lincRNA Interval_50110 chr14 8054136 8055445 + 0 NA intron (ENSMUSG00000025277.14, intron 7 of 7) protein_coding-intron (ENSMUSG00000025277.14, intron 8 of 8) -35288 ENSMUSG00000023156.4 ENSMUSG00000023156 ENSMUST00000180369 Rpp14 protein_coding Interval_63169 chr15 99527424 99528303 + 0 NA promoter-TSS (ENSMUSG00000023011.8) protein_coding-promoter-TSS (ENSMUSG00000023011.8) -17186 ENSMUSG00000023011.8 ENSMUSG00000023011 ENSMUST00000230603 Faim2 protein_coding Interval_61625 chr15 83017663 83017909 + 0 NA intron (ENSMUSG00000058099.16, intron 1 of 5) protein_coding-intron (ENSMUSG00000058099.16, intron 1 of 5) 5297 ENSMUSG00000058099.16 ENSMUSG00000058099 ENSMUST00000231204 Nfam1 protein_coding Interval_36410 chr12 43998566 43999439 + 0 NA Intergenic Intergenic -37905 ENSMUSG00000111960.1 ENSMUSG00000111960 ENSMUST00000219678 Gm46349 lincRNA Interval_107322 chr3 105812075 105812941 + 0 NA Intergenic Intergenic -3032 ENSMUSG00000104835.4 ENSMUSG00000104835 ENSMUST00000196002 Gm5547 lincRNA Interval_172362 chrX 13753799 13754200 + 0 NA intron (ENSMUSG00000031012.17, intron 1 of 23) protein_coding-intron (ENSMUSG00000031012.17, intron 2 of 24) 32031 ENSMUSG00000031012.17 ENSMUSG00000031012 ENSMUST00000155989 Cask protein_coding Interval_27007 chr11 62340106 62340657 + 0 NA TTS (ENSMUSG00000018501.17) protein_coding-TTS (ENSMUSG00000018501.17) 8960 ENSMUSG00000081944.1 ENSMUSG00000081944 ENSMUST00000121709 Gm12276 processed_pseudogene Interval_105321 chr3 84889201 84889964 + 0 NA intron (ENSMUSG00000028086.15, intron 3 of 12) protein_coding-intron (ENSMUSG00000028086.15, intron 1 of 12) 15691 ENSMUSG00000102919.1 ENSMUSG00000102919 ENSMUST00000193246 Gm37726 TEC Interval_18742 chr10 89837465 89837686 + 0 NA Intergenic Intergenic -16129 ENSMUSG00000093967.1 ENSMUSG00000093967 ENSMUST00000179942 Gm26180 snRNA Interval_161696 chr8 122110148 122111512 + 0 NA intron (ENSMUSG00000092329.1, intron 1 of 15) protein_coding-intron (ENSMUSG00000092329.1, intron 1 of 15) 132806 ENSMUSG00000099140.1 ENSMUSG00000099140 ENSMUST00000184699 Mir7237 miRNA Interval_151657 chr7 125747221 125748440 + 0 NA intron (ENSMUSG00000032743.15, intron 2 of 27) protein_coding-intron (ENSMUSG00000032743.15, intron 2 of 27) 39913 ENSMUSG00000032743.15 ENSMUSG00000032743 ENSMUST00000155059 D430042O09Rik protein_coding Interval_34971 chr12 15937212 15938429 + 0 NA Intergenic Intergenic 42668 ENSMUSG00000113739.1 ENSMUSG00000113739 ENSMUST00000221010 Gm48584 lincRNA Interval_103097 chr3 35306790 35307028 + 0 NA Intergenic Intergenic -18705 ENSMUSG00000093499.1 ENSMUSG00000093499 ENSMUST00000177270 Gm25442 miRNA Interval_89263 chr2 18619162 18619365 + 0 NA Intergenic Intergenic 22839 ENSMUSG00000082943.1 ENSMUSG00000082943 ENSMUST00000117996 Gm13355 processed_pseudogene Interval_150983 chr7 117380380 117382115 + 0 NA promoter-TSS (ENSMUSG00000108693.1) TEC-promoter-TSS (ENSMUSG00000108693.1) -615 ENSMUSG00000108693.1 ENSMUSG00000108693 ENSMUST00000205957 Gm45153 TEC Interval_135321 chr6 38313515 38316271 + 0 NA TTS (ENSMUSG00000029826.14) protein_coding-TTS (ENSMUSG00000029826.14) -15634 ENSMUSG00000047749.2 ENSMUSG00000047749 ENSMUST00000058524 Zc3hav1l protein_coding Interval_842 chr1 12551889 12552180 + 0 NA Intergenic Intergenic -13543 ENSMUSG00000097628.1 ENSMUSG00000097628 ENSMUST00000181461 Gm2383 processed_pseudogene Interval_75174 chr17 64343153 64343885 + 0 NA Intergenic Intergenic -11632 ENSMUSG00000024083.16 ENSMUSG00000024083 ENSMUST00000232842 Pja2 protein_coding Interval_85976 chr19 34500798 34501061 + 0 NA intron (ENSMUSG00000024781.16, intron 3 of 4) protein_coding-intron (ENSMUSG00000024781.16, intron 7 of 9) -25765 ENSMUSG00000050370.5 ENSMUSG00000050370 ENSMUST00000050562 Ch25h protein_coding Interval_65183 chr16 20402129 20402367 + 0 NA exon (ENSMUSG00000022822.16, exon 5 of 5) protein_coding-exon (ENSMUSG00000022822.16, exon 5 of 5) -3300 ENSMUSG00000022822.16 ENSMUSG00000022822 ENSMUST00000231522 Abcc5 protein_coding Interval_63482 chr15 101365836 101366186 + 0 NA intron (ENSMUSG00000116114.1, intron 1 of 3) protein_coding-intron (ENSMUSG00000037185.9, intron 1 of 8) -1433 ENSMUSG00000037185.9 ENSMUSG00000037185 ENSMUST00000229267 Krt80 protein_coding Interval_139201 chr6 97141476 97142701 + 0 NA intron (ENSMUSG00000035245.12, intron 4 of 4) protein_coding-intron (ENSMUSG00000035245.12, intron 6 of 17) -6106 ENSMUSG00000107502.1 ENSMUSG00000107502 ENSMUST00000203184 Gm44065 TEC Interval_5262 chr1 87046891 87047200 + 0 NA exon (ENSMUSG00000053333.15, exon 17 of 21) protein_coding-exon (ENSMUSG00000053333.15, exon 17 of 21) 10322 ENSMUSG00000103984.1 ENSMUSG00000103984 ENSMUST00000195625 Gm37447 TEC Interval_119379 chr4 137340332 137340776 + 0 NA intron (ENSMUSG00000006699.17, intron 1 of 5) protein_coding-intron (ENSMUSG00000006699.17, intron 1 of 5) 14995 ENSMUSG00000089199.1 ENSMUSG00000089199 ENSMUST00000158574 Gm25772 snRNA Interval_54212 chr14 66308834 66309761 + 0 NA TTS (ENSMUSG00000022043.19) protein_coding-TTS (ENSMUSG00000022043.19) -12168 ENSMUSG00000085984.7 ENSMUSG00000085984 ENSMUST00000143392 1700001G11Rik processed_transcript Interval_91655 chr2 45872303 45872540 + 0 NA Intergenic Intergenic 62949 ENSMUSG00000083807.1 ENSMUSG00000083807 ENSMUST00000121515 Gm13466 processed_pseudogene Interval_24013 chr11 29488790 29488982 + 0 NA intron (ENSMUSG00000032740.17, intron 22 of 30) protein_coding-intron (ENSMUSG00000032740.17, intron 22 of 31) 26145 ENSMUSG00000032673.5 ENSMUSG00000032673 ENSMUST00000039900 Prorsd1 protein_coding Interval_60713 chr15 76309356 76309731 + 0 NA exon (ENSMUSG00000022562.15, exon 1 of 4) protein_coding-exon (ENSMUSG00000022562.15, exon 1 of 4) -7410 ENSMUSG00000022562.15 ENSMUSG00000022562 ENSMUST00000165279 Oplah protein_coding Interval_118551 chr4 132459883 132460653 + 0 NA intron (ENSMUSG00000066042.4, intron 1 of 1) protein_coding-intron (ENSMUSG00000066042.4, intron 2 of 2) 3063 ENSMUSG00000066042.4 ENSMUSG00000066042 ENSMUST00000123604 Med18 protein_coding Interval_49801 chr13 115725569 115725827 + 0 NA Intergenic Intergenic -6199 ENSMUSG00000114847.1 ENSMUSG00000114847 ENSMUST00000225821 Gm47892 processed_pseudogene Interval_73542 chr17 40162346 40162547 + 0 NA Intergenic Intergenic -25229 ENSMUSG00000117307.1 ENSMUSG00000117307 ENSMUST00000232831 Gm49837 processed_pseudogene Interval_75072 chr17 62927136 62927431 + 0 NA Intergenic Intergenic -46139 ENSMUSG00000048915.12 ENSMUSG00000048915 ENSMUST00000078839 Efna5 protein_coding Interval_127664 chr5 106418836 106419231 + 0 NA Intergenic Intergenic 39133 ENSMUSG00000034384.11 ENSMUSG00000034384 ENSMUST00000086795 Barhl2 protein_coding Interval_84013 chr19 6108564 6108902 + 0 NA exon (ENSMUSG00000054999.2, exon 5 of 18) protein_coding-exon (ENSMUSG00000054999.2, exon 5 of 18) 2951 ENSMUSG00000054999.2 ENSMUSG00000054999 ENSMUST00000044451 Naaladl1 protein_coding Interval_133877 chr6 13916264 13916515 + 0 NA intron (ENSMUSG00000097616.7, intron 2 of 2) lincRNA-intron (ENSMUSG00000097616.7, intron 2 of 2) -2941 ENSMUSG00000107562.1 ENSMUSG00000107562 ENSMUST00000203018 Gm44412 processed_pseudogene Interval_157343 chr8 69703980 69704370 + 0 NA TTS (ENSMUSG00000054648.8) protein_coding-TTS (ENSMUSG00000054648.8) 12288 ENSMUSG00000054648.8 ENSMUSG00000054648 ENSMUST00000238311 Zfp869 protein_coding Interval_167919 chr9 74256229 74257232 + 0 NA intron (ENSMUSG00000044976.17, intron 18 of 19) protein_coding-intron (ENSMUSG00000044976.17, intron 18 of 19) -105880 ENSMUSG00000084725.2 ENSMUSG00000084725 ENSMUST00000122776 Gm24141 snRNA Interval_133765 chr6 11916756 11917067 + 0 NA intron (ENSMUSG00000029629.17, intron 1 of 3) protein_coding-intron (ENSMUSG00000029629.17, intron 1 of 2) -9428 ENSMUSG00000029632.7 ENSMUSG00000029632 ENSMUST00000204714 Ndufa4 protein_coding Interval_11577 chr1 182895701 182896216 + 0 NA TTS (ENSMUSG00000038576.15) protein_coding-TTS (ENSMUSG00000038576.15) -11752 ENSMUSG00000102291.1 ENSMUSG00000102291 ENSMUST00000192563 Gm37542 TEC Interval_126933 chr5 97410644 97410846 + 0 NA intron (ENSMUSG00000097516.7, intron 2 of 3) lincRNA-intron (ENSMUSG00000097516.7, intron 2 of 3) 18328 ENSMUSG00000097516.7 ENSMUSG00000097516 ENSMUST00000180634 4930467D21Rik lincRNA Interval_174329 chrX 144402589 144404155 + 0 NA intron (ENSMUSG00000041710.4, intron 7 of 10) protein_coding-intron (ENSMUSG00000041710.4, intron 7 of 10) -67309 ENSMUSG00000072934.10 ENSMUSG00000072934 ENSMUST00000178233 Trpc5os protein_coding Interval_4503 chr1 74644093 74644289 + 0 NA Intergenic Intergenic 40981 ENSMUSG00000033276.18 ENSMUSG00000033276 ENSMUST00000123154 Stk36 protein_coding Interval_92372 chr2 59346395 59346941 + 0 NA intron (ENSMUSG00000026991.20, intron 17 of 21) protein_coding-intron (ENSMUSG00000026991.20, intron 18 of 21) 40803 ENSMUSG00000087455.7 ENSMUSG00000087455 ENSMUST00000155111 5330411J11Rik processed_transcript Interval_56876 chr14 122710352 122710672 + 0 NA intron (ENSMUSG00000041650.15, intron 17 of 23) protein_coding-intron (ENSMUSG00000041650.15, intron 17 of 23) 24196 ENSMUSG00000115264.1 ENSMUSG00000115264 ENSMUST00000226674 Gm49260 TEC Interval_130078 chr5 124118587 124118986 + 0 NA TTS (ENSMUSG00000029404.15) protein_coding-TTS (ENSMUSG00000029404.15) 1475 ENSMUSG00000029404.15 ENSMUSG00000029404 ENSMUST00000196401 Arl6ip4 protein_coding Interval_66212 chr16 32348299 32348898 + 0 NA intron (ENSMUSG00000053774.9, intron 1 of 2) protein_coding-intron (ENSMUSG00000053774.9, intron 1 of 10) 16333 ENSMUSG00000053774.9 ENSMUSG00000053774 ENSMUST00000232137 Ubxn7 protein_coding Interval_66029 chr16 31044769 31045607 + 0 NA intron (ENSMUSG00000047434.14, intron 2 of 2) protein_coding-intron (ENSMUSG00000047434.14, intron 2 of 3) 24638 ENSMUSG00000047434.14 ENSMUSG00000047434 ENSMUST00000142870 Xxylt1 protein_coding Interval_111484 chr4 22047409 22048620 + 0 NA Intergenic Intergenic -39825 ENSMUSG00000080997.1 ENSMUSG00000080997 ENSMUST00000118473 Gm11885 processed_pseudogene Interval_70004 chr17 4282466 4283528 + 0 NA Intergenic Intergenic -160895 ENSMUSG00000116615.1 ENSMUSG00000116615 ENSMUST00000231319 4930548J01Rik processed_transcript Interval_2522 chr1 39935552 39937127 + 0 NA intron (ENSMUSG00000026074.15, intron 2 of 31) protein_coding-intron (ENSMUSG00000026074.15, intron 2 of 30) 35160 ENSMUSG00000026074.15 ENSMUSG00000026074 ENSMUST00000191657 Map4k4 protein_coding Interval_87358 chr19 47934299 47935111 + 0 NA Intergenic Intergenic -2970 ENSMUSG00000046585.9 ENSMUSG00000046585 ENSMUST00000066308 Cfap58 protein_coding Interval_94954 chr2 102142730 102142966 + 0 NA intron (ENSMUSG00000048058.17, intron 1 of 5) protein_coding-intron (ENSMUSG00000048058.17, intron 1 of 5) -4729 ENSMUSG00000048058.17 ENSMUSG00000048058 ENSMUST00000127888 Ldlrad3 protein_coding Interval_166764 chr9 62491048 62491663 + 0 NA intron (ENSMUSG00000041729.15, intron 1 of 2) protein_coding-intron (ENSMUSG00000041729.15, intron 1 of 11) -23674 ENSMUSG00000084540.1 ENSMUSG00000084540 ENSMUST00000122591 n-R5s84 rRNA Interval_21620 chr11 3277659 3279031 + 0 NA Intergenic Intergenic -11953 ENSMUSG00000020457.13 ENSMUSG00000020457 ENSMUST00000132159 Drg1 protein_coding Interval_129805 chr5 122452219 122453701 + 0 NA TTS (ENSMUSG00000029467.15) protein_coding-TTS (ENSMUSG00000029467.15) 12821 ENSMUSG00000029466.11 ENSMUSG00000029466 ENSMUST00000154074 Anapc7 protein_coding Interval_22421 chr11 9919162 9919550 + 0 NA Intergenic Intergenic -181735 ENSMUSG00000081629.1 ENSMUSG00000081629 ENSMUST00000117907 Eif3s6-ps1 processed_pseudogene Interval_31041 chr11 97832223 97832398 + 0 NA promoter-TSS (ENSMUSG00000038366.15) protein_coding-promoter-TSS (ENSMUSG00000038366.15) -9009 ENSMUSG00000050538.8 ENSMUSG00000050538 ENSMUST00000170806 B230217C12Rik protein_coding Interval_29440 chr11 84031550 84032829 + 0 NA intron (ENSMUSG00000034940.15, intron 5 of 6) protein_coding-intron (ENSMUSG00000034940.15, intron 19 of 21) 12988 ENSMUSG00000034940.15 ENSMUSG00000034940 ENSMUST00000132887 Synrg protein_coding Interval_141024 chr6 124449477 124449926 + 0 NA exon (ENSMUSG00000008153.12, exon 1 of 2) protein_coding-exon (ENSMUSG00000008153.12, exon 1 of 2) -16201 ENSMUSG00000008153.12 ENSMUSG00000008153 ENSMUST00000150774 Clstn3 protein_coding Interval_107347 chr3 106067299 106068141 + 0 NA Intergenic Intergenic -23314 ENSMUSG00000105051.1 ENSMUSG00000105051 ENSMUST00000196905 Gm4248 processed_pseudogene Interval_57182 chr15 7180852 7181135 + 0 NA intron (ENSMUSG00000054263.12, intron 13 of 15) protein_coding-intron (ENSMUSG00000054263.12, intron 13 of 19) 73775 ENSMUSG00000042961.13 ENSMUSG00000042961 ENSMUST00000159726 Egflam protein_coding Interval_65386 chr16 22060642 22062464 + 0 NA exon (ENSMUSG00000033581.17, exon 2 of 2) protein_coding-exon (ENSMUSG00000033581.17, exon 2 of 2) 8043 ENSMUSG00000068487.6 ENSMUSG00000068487 ENSMUST00000132879 Ndufa11b processed_pseudogene Interval_39066 chr12 84805174 84806138 + 0 NA intron (ENSMUSG00000002020.15, intron 15 of 34) protein_coding-intron (ENSMUSG00000002020.15, intron 15 of 35) 32365 ENSMUSG00000021241.7 ENSMUSG00000021241 ENSMUST00000220726 Isca2 protein_coding Interval_174247 chrX 141458711 141459083 + 0 NA intron (ENSMUSG00000031273.16, intron 2 of 44) protein_coding-intron (ENSMUSG00000031273.16, intron 2 of 44) 23924 ENSMUSG00000082223.1 ENSMUSG00000082223 ENSMUST00000121943 Gm15079 processed_pseudogene Interval_54624 chr14 72371174 72372718 + 0 NA Intergenic Intergenic 119892 ENSMUSG00000109446.1 ENSMUSG00000109446 ENSMUST00000208955 Gm9195 protein_coding Interval_62544 chr15 94543057 94544142 + 0 NA promoter-TSS (ENSMUSG00000033356.3) protein_coding-promoter-TSS (ENSMUSG00000033356.3) -54 ENSMUSG00000059883.16 ENSMUSG00000059883 ENSMUST00000109248 Irak4 protein_coding Interval_100656 chr2 170850287 170850596 + 0 NA intron (ENSMUSG00000027560.4, intron 6 of 7) protein_coding-intron (ENSMUSG00000027560.4, intron 6 of 7) 104383 ENSMUSG00000080955.1 ENSMUSG00000080955 ENSMUST00000117955 Gm14263 processed_pseudogene Interval_96372 chr2 122043416 122043770 + 0 NA intron (ENSMUSG00000027236.8, intron 4 of 7) protein_coding-intron (ENSMUSG00000027236.8, intron 4 of 7) 14941 ENSMUSG00000027236.8 ENSMUSG00000027236 ENSMUST00000142747 Eif3j1 protein_coding Interval_149863 chr7 102064713 102066011 + 0 NA promoter-TSS (ENSMUSG00000070425.13) protein_coding-promoter-TSS (ENSMUSG00000070425.13) -158 ENSMUSG00000099481.6 ENSMUSG00000099481 ENSMUST00000143839 Xndc1 protein_coding Interval_47943 chr13 94528846 94529554 + 0 NA intron (ENSMUSG00000021686.6, intron 7 of 11) protein_coding-intron (ENSMUSG00000021686.6, intron 23 of 26) 12038 ENSMUSG00000084423.1 ENSMUSG00000084423 ENSMUST00000122474 Gm25109 miRNA Interval_51274 chr14 25673025 25673363 + 0 NA Intergenic Intergenic -21000 ENSMUSG00000021868.7 ENSMUSG00000021868 ENSMUST00000223872 Ppif protein_coding Interval_101294 chr2 180219494 180220698 + 0 NA intron (ENSMUSG00000015647.9, intron 2 of 78) protein_coding-intron (ENSMUSG00000015647.9, intron 2 of 78) -37283 ENSMUSG00000039001.12 ENSMUSG00000039001 ENSMUST00000145043 Rps21 protein_coding Interval_150227 chr7 108542407 108542955 + 0 NA Intergenic Intergenic -1852 ENSMUSG00000060759.4 ENSMUSG00000060759 ENSMUST00000211693 Olfr503 protein_coding Interval_130099 chr5 124258563 124259618 + 0 NA TTS (ENSMUSG00000038126.17) protein_coding-TTS (ENSMUSG00000038126.17) 1327 ENSMUSG00000087784.1 ENSMUSG00000087784 ENSMUST00000157159 Gm23171 misc_RNA Interval_121973 chr5 12846842 12847859 + 0 NA Intergenic Intergenic -93020 ENSMUSG00000094310.1 ENSMUSG00000094310 ENSMUST00000180047 Gm23243 miRNA Interval_23297 chr11 21247219 21249038 + 0 NA intron (ENSMUSG00000020128.15, intron 1 of 22) protein_coding-intron (ENSMUSG00000020128.15, intron 1 of 22) 1432 ENSMUSG00000089155.1 ENSMUSG00000089155 ENSMUST00000158530 Gm23582 snoRNA Interval_50647 chr14 17326694 17326895 + 0 NA Intergenic Intergenic 205291 ENSMUSG00000114769.1 ENSMUSG00000114769 ENSMUST00000224880 Gm48312 processed_pseudogene Interval_125782 chr5 74111082 74111298 + 0 NA Intergenic Intergenic 17660 ENSMUSG00000093355.1 ENSMUSG00000093355 ENSMUST00000175614 Snora26 snoRNA Interval_54369 chr14 67981746 67982647 + 0 NA Intergenic Intergenic 69134 ENSMUSG00000114621.1 ENSMUSG00000114621 ENSMUST00000223853 Gm31107 lincRNA Interval_73107 chr17 34855750 34857592 + 0 NA TTS (ENSMUSG00000024369.16) protein_coding-TTS (ENSMUSG00000024369.16) 961 ENSMUSG00000098445.1 ENSMUSG00000098445 ENSMUST00000184774 Mir6972 miRNA Interval_47821 chr13 93514202 93515000 + 0 NA Intergenic Intergenic -14864 ENSMUSG00000021690.10 ENSMUSG00000021690 ENSMUST00000220513 Jmy protein_coding Interval_166658 chr9 61652385 61652602 + 0 NA Intergenic Intergenic -110591 ENSMUSG00000111739.1 ENSMUSG00000111739 ENSMUST00000213572 Gm47241 processed_pseudogene Interval_128317 chr5 112509850 112510595 + 0 NA intron (ENSMUSG00000058153.15, intron 1 of 14) protein_coding-intron (ENSMUSG00000058153.15, intron 1 of 16) 60796 ENSMUSG00000072722.2 ENSMUSG00000072722 ENSMUST00000100882 Gm6588 protein_coding Interval_124282 chr5 43531887 43532088 + 0 NA exon (ENSMUSG00000104547.1, exon 1 of 1) TEC-exon (ENSMUSG00000104547.1, exon 1 of 1) 3361 ENSMUSG00000104547.1 ENSMUSG00000104547 ENSMUST00000197067 Gm43022 TEC Interval_135164 chr6 37101399 37101862 + 0 NA intron (ENSMUSG00000038665.15, intron 3 of 32) protein_coding-intron (ENSMUSG00000038665.15, intron 3 of 32) 144780 ENSMUSG00000107310.1 ENSMUSG00000107310 ENSMUST00000202891 Gm7452 transcribed_processed_pseudogene Interval_142552 chr6 143212759 143213497 + 0 NA intron (ENSMUSG00000107802.1, intron 2 of 4) antisense-intron (ENSMUSG00000107802.1, intron 2 of 4) 8320 ENSMUSG00000107802.1 ENSMUSG00000107802 ENSMUST00000204351 1700126G02Rik antisense Interval_104787 chr3 73226634 73226888 + 0 NA intron (ENSMUSG00000103428.1, intron 1 of 4) lincRNA-intron (ENSMUSG00000103428.1, intron 1 of 4) -18760 ENSMUSG00000088794.1 ENSMUSG00000088794 ENSMUST00000158169 Gm22538 misc_RNA Interval_78643 chr18 16211664 16212130 + 0 NA Intergenic Intergenic 9471 ENSMUSG00000084643.1 ENSMUSG00000084643 ENSMUST00000122694 Gm24385 misc_RNA Interval_70689 chr17 13486580 13488014 + 0 NA exon (ENSMUSG00000117042.1, exon 6 of 6) lincRNA-exon (ENSMUSG00000117042.1, exon 6 of 6) -13657 ENSMUSG00000090211.3 ENSMUSG00000090211 ENSMUST00000160626 Gm16050 lincRNA Interval_134377 chr6 27347949 27348686 + 0 NA intron (ENSMUSG00000024211.15, intron 8 of 9) protein_coding-intron (ENSMUSG00000024211.15, intron 8 of 9) 95636 ENSMUSG00000107377.1 ENSMUSG00000107377 ENSMUST00000202562 Gm42801 TEC Interval_33218 chr11 115291574 115293526 + 0 NA intron (ENSMUSG00000044788.10, intron 2 of 5) protein_coding-intron (ENSMUSG00000044788.10, intron 2 of 5) 5113 ENSMUSG00000044788.10 ENSMUSG00000044788 ENSMUST00000141006 Fads6 protein_coding Interval_54129 chr14 65567319 65567546 + 0 NA intron (ENSMUSG00000022031.6, intron 7 of 14) protein_coding-intron (ENSMUSG00000022031.6, intron 7 of 14) 25620 ENSMUSG00000022031.6 ENSMUSG00000022031 ENSMUST00000224743 Elp3 protein_coding Interval_66839 chr16 38001692 38002660 + 0 NA intron (ENSMUSG00000046961.8, intron 9 of 9) protein_coding-intron (ENSMUSG00000046961.8, intron 9 of 9) 22089 ENSMUSG00000065188.1 ENSMUSG00000065188 ENSMUST00000083254 Gm25140 snRNA Interval_33217 chr11 115286780 115287919 + 0 NA intron (ENSMUSG00000044788.10, intron 2 of 5) protein_coding-intron (ENSMUSG00000044788.10, intron 2 of 5) 10314 ENSMUSG00000044788.10 ENSMUSG00000044788 ENSMUST00000141006 Fads6 protein_coding Interval_148130 chr7 79397366 79399539 + 0 NA promoter-TSS (ENSMUSG00000039187.16) protein_coding-promoter-TSS (ENSMUSG00000039187.16) -11540 ENSMUSG00000039194.16 ENSMUSG00000039194 ENSMUST00000206695 Rlbp1 protein_coding Interval_116200 chr4 108650182 108650404 + 0 NA exon (ENSMUSG00000034557.14, exon 13 of 16) protein_coding-exon (ENSMUSG00000034557.14, exon 13 of 16) -12852 ENSMUSG00000091985.1 ENSMUSG00000091985 ENSMUST00000170933 Gm17354 lincRNA Interval_106159 chr3 93819955 93820311 + 0 NA Intergenic Intergenic -5887 ENSMUSG00000058005.3 ENSMUSG00000058005 ENSMUST00000081780 Tdpoz3 protein_coding Interval_153430 chr7 144723987 144724347 + 0 NA intron (ENSMUSG00000031075.19, intron 1 of 6) protein_coding-intron (ENSMUSG00000031075.19, intron 1 of 24) 14399 ENSMUSG00000031075.19 ENSMUSG00000031075 ENSMUST00000131731 Ano1 protein_coding Interval_37625 chr12 70512647 70512845 + 0 NA Intergenic Intergenic -9852 ENSMUSG00000113302.1 ENSMUSG00000113302 ENSMUST00000221234 Gm32219 lincRNA Interval_174433 chrX 152248092 152249142 + 0 NA intron (ENSMUSG00000025332.14, intron 9 of 25) protein_coding-intron (ENSMUSG00000025332.14, intron 8 of 24) -21189 ENSMUSG00000025332.14 ENSMUSG00000025332 ENSMUST00000155793 Kdm5c protein_coding Interval_122420 chr5 22477860 22478135 + 0 NA Intergenic Intergenic -5005 ENSMUSG00000105081.1 ENSMUSG00000105081 ENSMUST00000198877 Gm43110 processed_pseudogene Interval_40668 chr12 106674754 106675190 + 0 NA Intergenic Intergenic 41390 ENSMUSG00000085820.7 ENSMUSG00000085820 ENSMUST00000149382 4933406K04Rik lincRNA Interval_137573 chr6 73383939 73384190 + 0 NA Intergenic Intergenic -8078 ENSMUSG00000093965.1 ENSMUSG00000093965 ENSMUST00000178007 Gm24370 miRNA Interval_37757 chr12 71758172 71758361 + 0 NA Intergenic Intergenic -3881 ENSMUSG00000114063.1 ENSMUSG00000114063 ENSMUST00000221874 Gm47555 processed_pseudogene Interval_18738 chr10 89810130 89810394 + 0 NA intron (ENSMUSG00000019951.10, intron 1 of 2) protein_coding-intron (ENSMUSG00000019951.10, intron 17 of 20) 11184 ENSMUSG00000093967.1 ENSMUSG00000093967 ENSMUST00000179942 Gm26180 snRNA Interval_97804 chr2 144182305 144183183 + 0 NA intron (ENSMUSG00000074758.10, intron 1 of 3) lincRNA-intron (ENSMUSG00000074758.10, intron 1 of 3) 8307 ENSMUSG00000074758.10 ENSMUSG00000074758 ENSMUST00000209482 Gm5535 lincRNA Interval_126595 chr5 90598551 90599285 + 0 NA Intergenic Intergenic -9861 ENSMUSG00000106863.3 ENSMUSG00000106863 ENSMUST00000200783 Gm42109 processed_transcript Interval_112534 chr4 42933428 42934208 + 0 NA promoter-TSS (ENSMUSG00000036062.13) protein_coding-promoter-TSS (ENSMUSG00000036062.13) -16622 ENSMUSG00000036052.14 ENSMUSG00000036052 ENSMUST00000107973 Dnajb5 protein_coding Interval_146316 chr7 45308593 45309684 + 0 NA exon (ENSMUSG00000038260.10, exon 18 of 25) protein_coding-exon (ENSMUSG00000038260.10, exon 18 of 25) -15827 ENSMUSG00000046721.11 ENSMUSG00000046721 ENSMUST00000026901 Rpl14-ps1 processed_pseudogene Interval_15497 chr10 49686906 49687247 + 0 NA intron (ENSMUSG00000056073.16, intron 2 of 7) protein_coding-intron (ENSMUSG00000056073.16, intron 1 of 15) 15758 ENSMUSG00000112142.1 ENSMUSG00000112142 ENSMUST00000219161 Gm47022 TEC Interval_41108 chr12 111243826 111244104 + 0 NA intron (ENSMUSG00000021277.16, intron 5 of 9) protein_coding-intron (ENSMUSG00000021277.16, intron 6 of 11) -4518 ENSMUSG00000021277.16 ENSMUSG00000021277 ENSMUST00000143395 Traf3 protein_coding Interval_121642 chr5 4191798 4193890 + 0 NA intron (ENSMUSG00000053178.5, intron 1 of 1) protein_coding-intron (ENSMUSG00000053178.5, intron 1 of 1) 477 ENSMUSG00000053178.5 ENSMUSG00000053178 ENSMUST00000177258 Mterf1b protein_coding Interval_170549 chr9 108635073 108636077 + 0 NA intron (ENSMUSG00000064145.12, intron 3 of 6) protein_coding-intron (ENSMUSG00000064145.12, intron 3 of 15) -5431 ENSMUSG00000064145.12 ENSMUSG00000064145 ENSMUST00000195623 Arih2 protein_coding Interval_133749 chr6 11230893 11231115 + 0 NA Intergenic Intergenic -256626 ENSMUSG00000107948.2 ENSMUSG00000107948 ENSMUST00000205141 AA545190 lincRNA Interval_31407 chr11 100505067 100505894 + 0 NA intron (ENSMUSG00000020917.17, intron 10 of 26) protein_coding-intron (ENSMUSG00000020917.17, intron 11 of 27) 18118 ENSMUSG00000020917.17 ENSMUSG00000020917 ENSMUST00000107385 Acly protein_coding Interval_126858 chr5 95950041 95950962 + 0 NA Intergenic Intergenic -6450 ENSMUSG00000023078.6 ENSMUSG00000023078 ENSMUST00000023840 Cxcl13 protein_coding Interval_39105 chr12 85076582 85076929 + 0 NA Intergenic Intergenic -9619 ENSMUSG00000093629.1 ENSMUSG00000093629 ENSMUST00000177043 Prox2os antisense Interval_128421 chr5 113239943 113240844 + 0 NA Intergenic Intergenic 13484 ENSMUSG00000066964.2 ENSMUSG00000066964 ENSMUST00000086615 Tmem211 protein_coding Interval_43468 chr13 31618126 31620934 + 0 NA intron (ENSMUSG00000087276.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000087276.1, intron 1 of 1) 362 ENSMUSG00000087276.1 ENSMUSG00000087276 ENSMUST00000130966 Gm11378 lincRNA Interval_28329 chr11 75231556 75232329 + 0 NA intron (ENSMUSG00000045287.6, intron 1 of 1) protein_coding-intron (ENSMUSG00000045287.6, intron 1 of 1) 38159 ENSMUSG00000045287.6 ENSMUSG00000045287 ENSMUST00000102514 Rtn4rl1 protein_coding Interval_99985 chr2 166246590 166247217 + 0 NA Intergenic Intergenic -27005 ENSMUSG00000084840.1 ENSMUSG00000084840 ENSMUST00000152987 Gm11468 lincRNA Interval_69759 chr16 96087180 96087549 + 0 NA intron (ENSMUSG00000117289.1, intron 1 of 1) bidirectional_promoter_lncRNA-intron (ENSMUSG00000117289.1, intron 1 of 1) 4688 ENSMUSG00000117289.1 ENSMUSG00000117289 ENSMUST00000233171 1700093J21Rik bidirectional_promoter_lncRNA Interval_118796 chr4 133756561 133757759 + 0 NA promoter-TSS (ENSMUSG00000007880.16) protein_coding-promoter-TSS (ENSMUSG00000007880.16) -36384 ENSMUSG00000007880.16 ENSMUSG00000007880 ENSMUST00000139709 Arid1a protein_coding Interval_147269 chr7 65317194 65317742 + 0 NA intron (ENSMUSG00000030516.14, intron 18 of 27) protein_coding-intron (ENSMUSG00000030516.14, intron 18 of 26) 49314 ENSMUSG00000108338.1 ENSMUSG00000108338 ENSMUST00000206550 Gm44794 TEC Interval_17342 chr10 75988564 75988998 + 0 NA intron (ENSMUSG00000033255.8, intron 4 of 7) protein_coding-intron (ENSMUSG00000033255.8, intron 7 of 13) 5211 ENSMUSG00000085662.1 ENSMUSG00000085662 ENSMUST00000131874 Gm16220 antisense Interval_162475 chr8 129245314 129245562 + 0 NA Intergenic Intergenic -7560 ENSMUSG00000094530.2 ENSMUSG00000094530 ENSMUST00000180210 Gm21399 processed_pseudogene Interval_114050 chr4 62755773 62756514 + 0 NA Intergenic Intergenic -28606 ENSMUSG00000086139.1 ENSMUSG00000086139 ENSMUST00000143618 Gm11211 lincRNA Interval_80893 chr18 49968529 49970780 + 0 NA Intergenic Intergenic 46941 ENSMUSG00000037416.13 ENSMUSG00000037416 ENSMUST00000181042 Dmxl1 protein_coding Interval_19257 chr10 95839681 95840148 + 0 NA intron (ENSMUSG00000110353.1, intron 1 of 3) protein_coding-intron (ENSMUSG00000110353.1, intron 1 of 2) 3016 ENSMUSG00000110353.1 ENSMUSG00000110353 ENSMUST00000210336 Gm33543 protein_coding Interval_109707 chr3 146177632 146178406 + 0 NA intron (ENSMUSG00000011008.13, intron 7 of 13) protein_coding-intron (ENSMUSG00000011008.13, intron 7 of 13) -12346 ENSMUSG00000011008.13 ENSMUSG00000011008 ENSMUST00000169984 Mcoln2 protein_coding Interval_25561 chr11 49772440 49772716 + 0 NA TTS (ENSMUSG00000092894.1) miRNA-TTS (ENSMUSG00000092894.1) 745 ENSMUSG00000092894.1 ENSMUSG00000092894 ENSMUST00000175153 Gm23813 miRNA Interval_139445 chr6 100226578 100228230 + 0 NA Intergenic Intergenic -20728 ENSMUSG00000108269.1 ENSMUSG00000108269 ENSMUST00000203798 Gm18422 transcribed_processed_pseudogene Interval_88506 chr2 5675477 5677294 + 0 NA promoter-TSS (ENSMUSG00000039145.16) protein_coding-promoter-TSS (ENSMUSG00000039145.16) 38118 ENSMUSG00000039145.16 ENSMUSG00000039145 ENSMUST00000155927 Camk1d protein_coding Interval_154712 chr8 22783630 22784823 + 0 NA Intergenic Intergenic 21396 ENSMUSG00000031539.6 ENSMUSG00000031539 ENSMUST00000210476 Ap3m2 protein_coding Interval_147683 chr7 71960410 71961556 + 0 NA promoter-TSS (ENSMUSG00000108800.1) lincRNA-promoter-TSS (ENSMUSG00000108800.1) -190 ENSMUSG00000108800.1 ENSMUSG00000108800 ENSMUST00000205268 1700011C11Rik lincRNA Interval_147964 chr7 75913813 75914277 + 0 NA Intergenic Intergenic 65648 ENSMUSG00000055652.14 ENSMUSG00000055652 ENSMUST00000205887 Klhl25 protein_coding Interval_120940 chr4 151778677 151779068 + 0 NA intron (ENSMUSG00000014592.21, intron 2 of 7) protein_coding-intron (ENSMUSG00000014592.21, intron 3 of 23) 82832 ENSMUSG00000014592.21 ENSMUSG00000014592 ENSMUST00000135780 Camta1 protein_coding Interval_61153 chr15 79518367 79519971 + 0 NA intron (ENSMUSG00000010830.8, intron 1 of 4) protein_coding-intron (ENSMUSG00000010830.8, intron 1 of 4) 2758 ENSMUSG00000010830.8 ENSMUSG00000010830 ENSMUST00000010974 Kdelr3 protein_coding Interval_87901 chr19 56996932 56997739 + 0 NA intron (ENSMUSG00000025083.18, intron 2 of 12) protein_coding-intron (ENSMUSG00000025083.18, intron 2 of 19) -60097 ENSMUSG00000025083.18 ENSMUSG00000025083 ENSMUST00000132851 Afap1l2 protein_coding Interval_149324 chr7 97443966 97445728 + 0 NA Intergenic Intergenic -6476 ENSMUSG00000051727.14 ENSMUSG00000051727 ENSMUST00000206279 Kctd14 protein_coding Interval_66520 chr16 34729185 34730309 + 0 NA Intergenic Intergenic 39037 ENSMUSG00000022833.7 ENSMUSG00000022833 ENSMUST00000232341 Ccdc14 protein_coding Interval_15052 chr10 42230308 42231374 + 0 NA intron (ENSMUSG00000048756.11, intron 2 of 2) protein_coding-intron (ENSMUSG00000048756.11, intron 2 of 3) 27525 ENSMUSG00000048756.11 ENSMUSG00000048756 ENSMUST00000105501 Foxo3 protein_coding Interval_140304 chr6 116282576 116283503 + 0 NA intron (ENSMUSG00000042213.17, intron 3 of 6) protein_coding-intron (ENSMUSG00000042213.17, intron 2 of 9) 18774 ENSMUSG00000042213.17 ENSMUSG00000042213 ENSMUST00000221824 Zfand4 protein_coding Interval_115118 chr4 90978954 90979823 + 0 NA Intergenic Intergenic 18605 ENSMUSG00000096896.1 ENSMUSG00000096896 ENSMUST00000178089 Gm25244 snoRNA Interval_101728 chr3 9205967 9206263 + 0 NA Intergenic Intergenic -44487 ENSMUSG00000069114.8 ENSMUSG00000069114 ENSMUST00000155203 Zbtb10 protein_coding Interval_139056 chr6 94634886 94636868 + 0 NA intron (ENSMUSG00000030029.14, intron 3 of 19) protein_coding-intron (ENSMUSG00000030029.14, intron 3 of 19) -29462 ENSMUSG00000098531.1 ENSMUSG00000098531 ENSMUST00000183891 Mir7041 miRNA Interval_161100 chr8 117459794 117460100 + 0 NA TTS (ENSMUSG00000034390.16) protein_coding-TTS (ENSMUSG00000034390.16) 682 ENSMUSG00000098483.1 ENSMUSG00000098483 ENSMUST00000183794 Mir7078 miRNA Interval_148104 chr7 79246198 79246845 + 0 NA Intergenic Intergenic 26290 ENSMUSG00000108387.1 ENSMUSG00000108387 ENSMUST00000206434 Gm31510 bidirectional_promoter_lncRNA Interval_145253 chr7 30965116 30965954 + 0 NA intron (ENSMUSG00000001247.16, intron 3 of 9) protein_coding-intron (ENSMUSG00000001247.16, intron 3 of 9) 7787 ENSMUSG00000001247.16 ENSMUSG00000001247 ENSMUST00000147431 Lsr protein_coding Interval_162664 chr9 7642773 7643003 + 0 NA intron (ENSMUSG00000018620.3, intron 4 of 9) protein_coding-intron (ENSMUSG00000018620.3, intron 4 of 9) 14657 ENSMUSG00000018620.3 ENSMUSG00000018620 ENSMUST00000034487 Mmp20 protein_coding Interval_16059 chr10 60418051 60418533 + 0 NA intron (ENSMUSG00000012819.15, intron 20 of 65) protein_coding-intron (ENSMUSG00000012819.15, intron 20 of 66) 18388 ENSMUSG00000090439.3 ENSMUSG00000090439 ENSMUST00000218360 Gm17455 protein_coding Interval_111996 chr4 33109593 33110402 + 0 NA Intergenic Intergenic -22524 ENSMUSG00000028280.9 ENSMUSG00000028280 ENSMUST00000029947 Gabrr1 protein_coding Interval_30976 chr11 97542625 97542946 + 0 NA intron (ENSMUSG00000038453.17, intron 2 of 18) protein_coding-intron (ENSMUSG00000038453.17, intron 2 of 17) -20890 ENSMUSG00000087042.1 ENSMUSG00000087042 ENSMUST00000134289 Gm11611 sense_intronic Interval_62045 chr15 86075797 86076195 + 0 NA intron (ENSMUSG00000035900.18, intron 1 of 1) protein_coding-intron (ENSMUSG00000035900.18, intron 1 of 18) 1263 ENSMUSG00000035900.18 ENSMUSG00000035900 ENSMUST00000147286 Gramd4 protein_coding Interval_172023 chr9 123598825 123599331 + 0 NA intron (ENSMUSG00000025243.15, intron 8 of 11) protein_coding-intron (ENSMUSG00000025243.15, intron 7 of 10) 29484 ENSMUSG00000025243.15 ENSMUSG00000025243 ENSMUST00000164241 Slc6a20b protein_coding Interval_27150 chr11 63391210 63392671 + 0 NA Intergenic Intergenic -21229 ENSMUSG00000085113.1 ENSMUSG00000085113 ENSMUST00000151765 B130011K05Rik lincRNA Interval_86675 chr19 42478428 42478846 + 0 NA Intergenic Intergenic -46852 ENSMUSG00000042401.8 ENSMUSG00000042401 ENSMUST00000238182 Crtac1 protein_coding Interval_93455 chr2 73167108 73167502 + 0 NA intron (ENSMUSG00000027108.15, intron 3 of 9) protein_coding-intron (ENSMUSG00000027108.15, intron 4 of 10) -9306 ENSMUSG00000083976.1 ENSMUSG00000083976 ENSMUST00000117304 Gm13664 processed_pseudogene Interval_157520 chr8 71181063 71183432 + 0 NA Intergenic Intergenic -41702 ENSMUSG00000110664.1 ENSMUSG00000110664 ENSMUST00000212311 Aprt-ps processed_pseudogene Interval_129354 chr5 119407741 119408768 + 0 NA Intergenic Intergenic 111009 ENSMUSG00000084548.1 ENSMUSG00000084548 ENSMUST00000122599 n-R5s175 rRNA Interval_46440 chr13 65277990 65279415 + 0 NA promoter-TSS (ENSMUSG00000021514.18) protein_coding-promoter-TSS (ENSMUSG00000021514.18) -10751 ENSMUSG00000114016.1 ENSMUSG00000114016 ENSMUST00000221365 Gm47258 TEC Interval_102652 chr3 28946242 28946543 + 0 NA Intergenic Intergenic 53775 ENSMUSG00000074655.1 ENSMUSG00000074655 ENSMUST00000099170 Gm1527 protein_coding Interval_118790 chr4 133723353 133724686 + 0 NA promoter-TSS (ENSMUSG00000007880.16) protein_coding-promoter-TSS (ENSMUSG00000007880.16) -3243 ENSMUSG00000007880.16 ENSMUSG00000007880 ENSMUST00000139709 Arid1a protein_coding Interval_131795 chr5 139942404 139943056 + 0 NA intron (ENSMUSG00000048988.8, intron 1 of 1) protein_coding-intron (ENSMUSG00000048988.8, intron 1 of 1) 21061 ENSMUSG00000106090.1 ENSMUSG00000106090 ENSMUST00000196164 Gm43704 processed_pseudogene Interval_134719 chr6 30749472 30750164 + 0 NA exon (ENSMUSG00000025607.15, exon 22 of 24) protein_coding-exon (ENSMUSG00000025607.15, exon 22 of 24) 8519 ENSMUSG00000065501.1 ENSMUSG00000065501 ENSMUST00000083567 Mir335 miRNA Interval_107782 chr3 114430045 114430982 + 0 NA Intergenic Intergenic 114259 ENSMUSG00000106452.1 ENSMUSG00000106452 ENSMUST00000199345 Gm43749 processed_pseudogene Interval_80040 chr18 36872048 36872502 + 0 NA Intergenic Intergenic -48121 ENSMUSG00000063514.3 ENSMUSG00000063514 ENSMUST00000180647 Gm6756 processed_pseudogene Interval_112277 chr4 39718484 39720381 + 0 NA Intergenic Intergenic -48186 ENSMUSG00000082302.1 ENSMUSG00000082302 ENSMUST00000117439 Gm12385 processed_pseudogene Interval_88169 chr19 60216385 60216593 + 0 NA intron (ENSMUSG00000057858.8, intron 1 of 3) protein_coding-intron (ENSMUSG00000057858.8, intron 5 of 7) -9845 ENSMUSG00000043623.7 ENSMUSG00000043623 ENSMUST00000061046 4933412A08Rik pseudogene Interval_79164 chr18 25197120 25197702 + 0 NA intron (ENSMUSG00000033632.16, intron 4 of 11) protein_coding-intron (ENSMUSG00000033632.16, intron 4 of 9) 28391 ENSMUSG00000033632.16 ENSMUSG00000033632 ENSMUST00000100131 AW554918 protein_coding Interval_88584 chr2 6378275 6378584 + 0 NA intron (ENSMUSG00000039046.15, intron 1 of 13) protein_coding-intron (ENSMUSG00000039046.15, intron 1 of 13) -42493 ENSMUSG00000039046.15 ENSMUSG00000039046 ENSMUST00000150515 Usp6nl protein_coding Interval_95574 chr2 112432076 112433607 + 0 NA Intergenic Intergenic -22156 ENSMUSG00000055943.5 ENSMUSG00000055943 ENSMUST00000069747 Emc7 protein_coding Interval_19455 chr10 99468840 99469477 + 0 NA intron (ENSMUSG00000112265.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000112265.1, intron 1 of 2) -8928 ENSMUSG00000112082.1 ENSMUSG00000112082 ENSMUST00000218838 Gm35035 lincRNA Interval_47468 chr13 84885944 84886212 + 0 NA Intergenic Intergenic 88239 ENSMUSG00000114338.1 ENSMUSG00000114338 ENSMUST00000225386 Gm4059 processed_pseudogene Interval_9110 chr1 153670225 153670925 + 0 NA intron (ENSMUSG00000042671.12, intron 3 of 6) protein_coding-intron (ENSMUSG00000042671.12, intron 3 of 6) 5301 ENSMUSG00000042671.12 ENSMUSG00000042671 ENSMUST00000147794 Rgs8 protein_coding Interval_130294 chr5 125465222 125466212 + 0 NA Intergenic Intergenic -5780 ENSMUSG00000104793.1 ENSMUSG00000104793 ENSMUST00000199788 Gm43756 TEC Interval_129015 chr5 116744139 116744630 + 0 NA intron (ENSMUSG00000106909.1, intron 2 of 2) lincRNA-intron (ENSMUSG00000106909.1, intron 2 of 2) -66847 ENSMUSG00000107237.1 ENSMUSG00000107237 ENSMUST00000201443 Gm29926 lincRNA Interval_115487 chr4 99337306 99337633 + 0 NA Intergenic Intergenic 41569 ENSMUSG00000070891.2 ENSMUSG00000070891 ENSMUST00000094955 Gm12689 protein_coding Interval_162841 chr9 10223357 10224131 + 0 NA intron (ENSMUSG00000039488.15, intron 3 of 24) protein_coding-intron (ENSMUSG00000039488.15, intron 1 of 22) 66843 ENSMUSG00000093959.1 ENSMUSG00000093959 ENSMUST00000178287 Gm24496 miRNA Interval_50026 chr13 119805135 119805351 + 0 NA Intergenic Intergenic -7990 ENSMUSG00000096182.1 ENSMUSG00000096182 ENSMUST00000179475 Gm23308 snRNA Interval_111739 chr4 27099334 27099541 + 0 NA Intergenic Intergenic 27072 ENSMUSG00000083447.1 ENSMUSG00000083447 ENSMUST00000120562 Gm11904 processed_pseudogene Interval_170170 chr9 105857669 105858485 + 0 NA TTS (ENSMUSG00000091345.9) protein_coding-TTS (ENSMUSG00000091345.9) -29992 ENSMUSG00000043719.14 ENSMUSG00000043719 ENSMUST00000060896 Col6a6 protein_coding Interval_36970 chr12 55782348 55782552 + 0 NA intron (ENSMUSG00000021027.17, intron 7 of 39) protein_coding-intron (ENSMUSG00000021027.17, intron 7 of 40) 34077 ENSMUSG00000112393.1 ENSMUSG00000112393 ENSMUST00000217762 Gm48655 TEC Interval_44183 chr13 41707952 41708664 + 0 NA Intergenic Intergenic 58865 ENSMUSG00000054258.9 ENSMUSG00000054258 ENSMUST00000067176 Gm5082 lincRNA Interval_38290 chr12 76939289 76939830 + 0 NA TTS (ENSMUSG00000112008.1) TEC-TTS (ENSMUSG00000112008.1) 2234 ENSMUSG00000112008.1 ENSMUSG00000112008 ENSMUST00000218256 Gm47218 TEC Interval_12061 chr1 189253178 189253762 + 0 NA intron (ENSMUSG00000037624.15, intron 4 of 5) protein_coding-intron (ENSMUSG00000037624.15, intron 5 of 6) 24353 ENSMUSG00000102824.1 ENSMUSG00000102824 ENSMUST00000191699 Pdcd5-ps processed_pseudogene Interval_131235 chr5 135929974 135930193 + 0 NA TTS (ENSMUSG00000051391.9) protein_coding-TTS (ENSMUSG00000051391.9) 4471 ENSMUSG00000051391.9 ENSMUSG00000051391 ENSMUST00000126192 Ywhag protein_coding Interval_43795 chr13 36540172 36541410 + 0 NA intron (ENSMUSG00000021420.13, intron 6 of 7) protein_coding-intron (ENSMUSG00000021420.13, intron 6 of 7) 18274 ENSMUSG00000114581.1 ENSMUSG00000114581 ENSMUST00000223824 Gm8277 processed_pseudogene Interval_28929 chr11 79326857 79327499 + 0 NA Intergenic Intergenic -12614 ENSMUSG00000020716.16 ENSMUSG00000020716 ENSMUST00000137997 Nf1 protein_coding Interval_3155 chr1 54129025 54129390 + 0 NA intron (ENSMUSG00000042807.15, intron 1 of 3) protein_coding-intron (ENSMUSG00000042807.15, intron 1 of 28) 25889 ENSMUSG00000102868.1 ENSMUSG00000102868 ENSMUST00000192858 Gm37633 TEC Interval_12177 chr1 190553516 190553781 + 0 NA Intergenic Intergenic -40678 ENSMUSG00000103963.1 ENSMUSG00000103963 ENSMUST00000191893 Gm30932 lincRNA Interval_154318 chr8 14361359 14361581 + 0 NA intron (ENSMUSG00000047495.15, intron 2 of 14) protein_coding-intron (ENSMUSG00000047495.15, intron 2 of 14) 11292 ENSMUSG00000106670.1 ENSMUSG00000106670 ENSMUST00000199602 Gm44347 miRNA Interval_23777 chr11 26127474 26129691 + 0 NA intron (ENSMUSG00000032985.15, intron 1 of 1) protein_coding-intron (ENSMUSG00000032985.15, intron 1 of 6) -73658 ENSMUSG00000099015.1 ENSMUSG00000099015 ENSMUST00000185114 Mir6372 miRNA Interval_81915 chr18 65820450 65821032 + 0 NA Intergenic Intergenic -9408 ENSMUSG00000117751.1 ENSMUSG00000117751 ENSMUST00000237019 Gm50256 TEC Interval_126649 chr5 91686415 91686938 + 0 NA Intergenic Intergenic 51403 ENSMUSG00000107261.1 ENSMUSG00000107261 ENSMUST00000202320 Trmt112-ps1 processed_pseudogene Interval_140925 chr6 122779582 122780552 + 0 NA promoter-TSS (ENSMUSG00000003153.10) protein_coding-promoter-TSS (ENSMUSG00000003153.10) -110 ENSMUSG00000003153.10 ENSMUSG00000003153 ENSMUST00000168801 Slc2a3 protein_coding Interval_116394 chr4 111431975 111432320 + 0 NA intron (ENSMUSG00000028545.13, intron 2 of 5) protein_coding-intron (ENSMUSG00000028545.13, intron 2 of 5) -1050 ENSMUSG00000028545.13 ENSMUSG00000028545 ENSMUST00000123667 Bend5 protein_coding Interval_20267 chr10 116537269 116537617 + 0 NA exon (ENSMUSG00000020166.15, exon 3 of 17) protein_coding-intron (ENSMUSG00000020166.15, intron 2 of 6) -5703 ENSMUSG00000093404.1 ENSMUSG00000093404 ENSMUST00000176664 Gm25190 miRNA Interval_90874 chr2 33129845 33132017 + 0 NA promoter-TSS (ENSMUSG00000038860.15) protein_coding-promoter-TSS (ENSMUSG00000038860.15) 27239 ENSMUSG00000038831.16 ENSMUSG00000038831 ENSMUST00000113164 Ralgps1 protein_coding Interval_122284 chr5 20938637 20939191 + 0 NA intron (ENSMUSG00000039968.9, intron 1 of 6) protein_coding-intron (ENSMUSG00000039968.9, intron 1 of 7) -12075 ENSMUSG00000101013.1 ENSMUSG00000101013 ENSMUST00000190567 A630072M18Rik antisense Interval_39097 chr12 85021953 85022779 + 0 NA intron (ENSMUSG00000021244.15, intron 4 of 19) protein_coding-intron (ENSMUSG00000021244.15, intron 4 of 20) -19861 ENSMUSG00000021244.15 ENSMUSG00000021244 ENSMUST00000166605 Ylpm1 protein_coding Interval_47586 chr13 89605061 89605856 + 0 NA exon (ENSMUSG00000021613.9, exon 4 of 5) protein_coding-exon (ENSMUSG00000021613.9, exon 4 of 5) 20947 ENSMUSG00000021613.9 ENSMUSG00000021613 ENSMUST00000225678 Hapln1 protein_coding Interval_60021 chr15 64023643 64024684 + 0 NA intron (ENSMUSG00000022378.14, intron 1 of 12) protein_coding-intron (ENSMUSG00000022378.14, intron 1 of 11) -1785 ENSMUSG00000065936.1 ENSMUSG00000065936 ENSMUST00000084002 Gm25628 snRNA Interval_44642 chr13 46882391 46883749 + 0 NA intron (ENSMUSG00000021375.11, intron 1 of 25) protein_coding-intron (ENSMUSG00000021375.11, intron 2 of 37) 2043 ENSMUSG00000114917.1 ENSMUSG00000114917 ENSMUST00000225017 Gm48250 antisense Interval_159221 chr8 91872428 91873100 + 0 NA exon (ENSMUSG00000099664.1, exon 2 of 2) lincRNA-exon (ENSMUSG00000099664.1, exon 2 of 2) 6893 ENSMUSG00000099664.1 ENSMUSG00000099664 ENSMUST00000191594 Gm28511 lincRNA Interval_128070 chr5 110665343 110666305 + 0 NA TTS (ENSMUSG00000099284.1) miRNA-TTS (ENSMUSG00000099284.1) 317 ENSMUSG00000099284.1 ENSMUSG00000099284 ENSMUST00000184384 Mir7026 miRNA Interval_71099 chr17 17973808 17975975 + 0 NA Intergenic Intergenic 4433 ENSMUSG00000079700.7 ENSMUSG00000079700 ENSMUST00000115565 Fpr3 protein_coding Interval_61418 chr15 81485843 81486525 + 0 NA exon (ENSMUSG00000115917.1, exon 1 of 1) processed_pseudogene-exon (ENSMUSG00000115917.1, exon 1 of 1) 197 ENSMUSG00000115917.1 ENSMUSG00000115917 ENSMUST00000231011 Gm49406 processed_pseudogene Interval_79371 chr18 31360726 31361987 + 0 NA Intergenic Intergenic -11152 ENSMUSG00000117502.1 ENSMUSG00000117502 ENSMUST00000234093 Gm7941 processed_pseudogene Interval_116884 chr4 117963118 117966869 + 0 NA intron (ENSMUSG00000028538.12, intron 2 of 7) protein_coding-intron (ENSMUSG00000028538.12, intron 5 of 11) -10043 ENSMUSG00000086554.1 ENSMUSG00000086554 ENSMUST00000146982 9530034E10Rik antisense Interval_91141 chr2 35411414 35411968 + 0 NA intron (ENSMUSG00000035778.17, intron 4 of 5) protein_coding-intron (ENSMUSG00000035778.17, intron 5 of 6) 11636 ENSMUSG00000035778.17 ENSMUSG00000035778 ENSMUST00000149442 Ggta1 protein_coding Interval_107220 chr3 104700508 104701275 + 0 NA promoter-TSS (ENSMUSG00000089452.1) snRNA-promoter-TSS (ENSMUSG00000089452.1) 21 ENSMUSG00000089452.1 ENSMUSG00000089452 ENSMUST00000158827 Gm24223 snRNA Interval_41993 chr13 6059848 6060368 + 0 NA Intergenic Intergenic 13674 ENSMUSG00000113483.1 ENSMUSG00000113483 ENSMUST00000221918 Gm47548 lincRNA Interval_6260 chr1 104944262 104945532 + 0 NA intron (ENSMUSG00000050840.8, intron 4 of 11) protein_coding-intron (ENSMUSG00000050840.8, intron 4 of 11) -32564 ENSMUSG00000089866.1 ENSMUSG00000089866 ENSMUST00000159213 Gm15699 antisense Interval_139090 chr6 94981389 94982548 + 0 NA Intergenic Intergenic 38134 ENSMUSG00000108187.1 ENSMUSG00000108187 ENSMUST00000203778 4930511E03Rik lincRNA Interval_80839 chr18 48496920 48497261 + 0 NA Intergenic Intergenic -129614 ENSMUSG00000097965.1 ENSMUSG00000097965 ENSMUST00000182835 Gm5839 processed_pseudogene Interval_89319 chr2 19292035 19292821 + 0 NA intron (ENSMUSG00000037683.14, intron 12 of 19) protein_coding-intron (ENSMUSG00000037683.14, intron 12 of 18) -52410 ENSMUSG00000087674.7 ENSMUSG00000087674 ENSMUST00000136456 4930447M23Rik lincRNA Interval_70517 chr17 11440981 11441728 + 0 NA intron (ENSMUSG00000023826.16, intron 5 of 10) protein_coding-intron (ENSMUSG00000023826.16, intron 5 of 6) 104444 ENSMUSG00000099618.1 ENSMUSG00000099618 ENSMUST00000185957 Gm28118 processed_pseudogene Interval_141727 chr6 134059447 134060255 + 0 NA intron (ENSMUSG00000030199.16, intron 1 of 4) protein_coding-intron (ENSMUSG00000030199.16, intron 1 of 7) -13503 ENSMUSG00000108214.1 ENSMUSG00000108214 ENSMUST00000204995 Gm43982 TEC Interval_148728 chr7 84708912 84709276 + 0 NA intron (ENSMUSG00000085236.3, intron 1 of 4) antisense-intron (ENSMUSG00000085236.3, intron 1 of 4) -19211 ENSMUSG00000030629.15 ENSMUSG00000030629 ENSMUST00000207975 Zfand6 protein_coding Interval_145856 chr7 40720997 40721285 + 0 NA Intergenic Intergenic 46404 ENSMUSG00000102004.3 ENSMUSG00000102004 ENSMUST00000207559 4933402C06Rik lincRNA Interval_14759 chr10 39632163 39634867 + 0 NA intron (ENSMUSG00000087177.7, intron 2 of 3) antisense-intron (ENSMUSG00000087177.7, intron 2 of 3) -13199 ENSMUSG00000019842.6 ENSMUSG00000019842 ENSMUST00000155945 Traf3ip2 protein_coding Interval_111223 chr4 15047711 15049521 + 0 NA intron (ENSMUSG00000040536.15, intron 6 of 13) protein_coding-intron (ENSMUSG00000040536.15, intron 5 of 12) 26034 ENSMUSG00000087241.1 ENSMUSG00000087241 ENSMUST00000129207 Gm11844 antisense Interval_1952 chr1 34877199 34878136 + 0 NA promoter-TSS (ENSMUSG00000026123.11) protein_coding-promoter-TSS (ENSMUSG00000026123.11) 11 ENSMUSG00000026123.11 ENSMUSG00000026123 ENSMUST00000191722 Plekhb2 protein_coding Interval_32461 chr11 107670878 107671095 + 0 NA promoter-TSS (ENSMUSG00000020721.16) protein_coding-promoter-TSS (ENSMUSG00000020721.16) -66 ENSMUSG00000020721.16 ENSMUSG00000020721 ENSMUST00000153080 Helz protein_coding Interval_172735 chrX 48071645 48072900 + 0 NA Intergenic Intergenic -37419 ENSMUSG00000037010.7 ENSMUSG00000037010 ENSMUST00000039026 Apln protein_coding Interval_3213 chr1 54925570 54926775 + 0 NA exon (ENSMUSG00000052331.14, exon 1 of 28) protein_coding-exon (ENSMUSG00000052331.14, exon 1 of 28) -9578 ENSMUSG00000102642.1 ENSMUSG00000102642 ENSMUST00000193052 A130048G24Rik TEC Interval_137091 chr6 67287246 67287502 + 0 NA exon (ENSMUSG00000036371.6, exon 8 of 8) protein_coding-exon (ENSMUSG00000036371.6, exon 8 of 8) 20369 ENSMUSG00000036371.6 ENSMUSG00000036371 ENSMUST00000204206 Serbp1 protein_coding Interval_169389 chr9 96867958 96868215 + 0 NA intron (ENSMUSG00000043587.15, intron 1 of 6) protein_coding-intron (ENSMUSG00000043587.15, intron 1 of 5) 21347 ENSMUSG00000043587.15 ENSMUSG00000043587 ENSMUST00000185561 Pxylp1 protein_coding Interval_41810 chr12 119793732 119793949 + 0 NA Intergenic Intergenic 82802 ENSMUSG00000114137.1 ENSMUSG00000114137 ENSMUST00000222158 Gm48685 unprocessed_pseudogene Interval_135386 chr6 38847955 38848472 + 0 NA intron (ENSMUSG00000061436.15, intron 1 of 14) protein_coding-intron (ENSMUSG00000061436.15, intron 1 of 14) 27710 ENSMUSG00000061436.15 ENSMUSG00000061436 ENSMUST00000114855 Hipk2 protein_coding Interval_143124 chr6 149552957 149553278 + 0 NA intron (ENSMUSG00000003452.15, intron 9 of 9) protein_coding-intron (ENSMUSG00000003452.15, intron 9 of 9) -13015 ENSMUSG00000096299.3 ENSMUSG00000096299 ENSMUST00000144085 Gm21814 lincRNA Interval_169652 chr9 99715237 99717325 + 0 NA intron (ENSMUSG00000089655.1, intron 1 of 2) protein_coding-intron (ENSMUSG00000032473.13, intron 1 of 4) -6272 ENSMUSG00000032473.13 ENSMUSG00000032473 ENSMUST00000131922 Cldn18 protein_coding Interval_123535 chr5 33296646 33297660 + 0 NA exon (ENSMUSG00000092275.1, exon 3 of 7) lincRNA-exon (ENSMUSG00000092275.1, exon 3 of 7) 13997 ENSMUSG00000092275.1 ENSMUSG00000092275 ENSMUST00000174768 Gm20465 lincRNA Interval_10228 chr1 167326866 167327056 + 0 NA intron (ENSMUSG00000052428.10, intron 6 of 6) protein_coding-intron (ENSMUSG00000052428.10, intron 6 of 7) 13463 ENSMUSG00000088246.1 ENSMUSG00000088246 ENSMUST00000157621 Gm25911 miRNA Interval_140774 chr6 121207932 121208267 + 0 NA Intergenic Intergenic -2597 ENSMUSG00000030137.8 ENSMUSG00000030137 ENSMUST00000032233 Tuba8 protein_coding Interval_47259 chr13 79880468 79880818 + 0 NA intron (ENSMUSG00000100168.2, intron 2 of 2) lincRNA-intron (ENSMUSG00000100168.2, intron 2 of 2) 2181 ENSMUSG00000114222.1 ENSMUSG00000114222 ENSMUST00000226041 Gm19320 processed_pseudogene Interval_129414 chr5 119838702 119840637 + 0 NA intron (ENSMUSG00000018263.11, intron 3 of 3) protein_coding-intron (ENSMUSG00000018263.11, intron 3 of 8) 7001 ENSMUSG00000018263.11 ENSMUSG00000018263 ENSMUST00000202504 Tbx5 protein_coding Interval_107283 chr3 105425055 105428188 + 0 NA Intergenic Intergenic 25106 ENSMUSG00000074346.6 ENSMUSG00000074346 ENSMUST00000130683 Kcnd3os antisense Interval_22566 chr11 11820085 11823338 + 0 NA intron (ENSMUSG00000020182.16, intron 12 of 14) protein_coding-intron (ENSMUSG00000020182.16, intron 12 of 14) -12749 ENSMUSG00000035455.12 ENSMUSG00000035455 ENSMUST00000150714 Fignl1 protein_coding Interval_156774 chr8 58901584 58901872 + 0 NA intron (ENSMUSG00000096914.3, intron 1 of 4) protein_coding-intron (ENSMUSG00000096914.3, intron 1 of 3) -10529 ENSMUSG00000049946.7 ENSMUSG00000049946 ENSMUST00000160055 BC030500 protein_coding Interval_151609 chr7 125187766 125188292 + 0 NA Intergenic Intergenic 31857 ENSMUSG00000073844.5 ENSMUSG00000073844 ENSMUST00000073056 Gm21957 processed_pseudogene Interval_89932 chr2 26576119 26576722 + 0 NA Intergenic Intergenic -10210 ENSMUSG00000026921.20 ENSMUSG00000026921 ENSMUST00000172683 Egfl7 protein_coding Interval_50644 chr14 17203332 17203544 + 0 NA Intergenic Intergenic 81935 ENSMUSG00000114769.1 ENSMUSG00000114769 ENSMUST00000224880 Gm48312 processed_pseudogene Interval_94374 chr2 90579544 90581300 + 0 NA exon (ENSMUSG00000025314.16, exon 1 of 24) protein_coding-exon (ENSMUSG00000025314.16, exon 1 of 24) 225 ENSMUSG00000025314.16 ENSMUSG00000025314 ENSMUST00000168621 Ptprj protein_coding Interval_71137 chr17 19486729 19488195 + 0 NA intron (ENSMUSG00000116984.1, intron 7 of 7) lincRNA-intron (ENSMUSG00000116984.1, intron 7 of 7) -17338 ENSMUSG00000091859.2 ENSMUSG00000091859 ENSMUST00000231465 Vmn2r100 protein_coding Interval_31372 chr11 100300231 100300759 + 0 NA Intergenic Intergenic 8824 ENSMUSG00000087265.1 ENSMUSG00000087265 ENSMUST00000153030 Gm12349 lincRNA Interval_14503 chr10 34434092 34434664 + 0 NA Intergenic Intergenic -15910 ENSMUSG00000039480.14 ENSMUSG00000039480 ENSMUST00000099973 Nt5dc1 protein_coding Interval_40374 chr12 104474616 104476238 + 0 NA exon (ENSMUSG00000114826.2, exon 1 of 1) bidirectional_promoter_lncRNA-exon (ENSMUSG00000114826.2, exon 1 of 1) 2096 ENSMUSG00000114826.2 ENSMUSG00000114826 ENSMUST00000224847 Gm10000 bidirectional_promoter_lncRNA Interval_143257 chr7 4802103 4802429 + 0 NA intron (ENSMUSG00000060860.8, intron 4 of 5) protein_coding-intron (ENSMUSG00000060860.8, intron 4 of 5) 8869 ENSMUSG00000030432.12 ENSMUSG00000030432 ENSMUST00000129888 Rpl28 protein_coding Interval_39552 chr12 90436882 90437194 + 0 NA Intergenic Intergenic -28214 ENSMUSG00000113001.1 ENSMUSG00000113001 ENSMUST00000220610 Gm40538 lincRNA Interval_101711 chr3 9072310 9073108 + 0 NA promoter-TSS (ENSMUSG00000103011.1) processed_pseudogene-promoter-TSS (ENSMUSG00000103011.1) -58 ENSMUSG00000103011.1 ENSMUSG00000103011 ENSMUST00000193160 Gm8860 processed_pseudogene Interval_136017 chr6 49691813 49692228 + 0 NA Intergenic Intergenic 35503 ENSMUSG00000107982.1 ENSMUSG00000107982 ENSMUST00000203005 Gm44219 processed_pseudogene Interval_13484 chr10 18564177 18564458 + 0 NA Intergenic Intergenic 1638 ENSMUSG00000111173.1 ENSMUSG00000111173 ENSMUST00000215943 Gm48297 processed_pseudogene Interval_11665 chr1 184263006 184263375 + 0 NA Intergenic Intergenic -95139 ENSMUSG00000102682.5 ENSMUSG00000102682 ENSMUST00000194453 Gm37223 lincRNA Interval_86221 chr19 37886527 37887319 + 0 NA Intergenic Intergenic 16653 ENSMUSG00000118115.1 ENSMUSG00000118115 ENSMUST00000237198 Gm4757 processed_pseudogene Interval_14203 chr10 28811098 28811293 + 0 NA intron (ENSMUSG00000049109.15, intron 5 of 5) protein_coding-intron (ENSMUSG00000049109.15, intron 4 of 5) -4439 ENSMUSG00000112111.1 ENSMUSG00000112111 ENSMUST00000218178 Gm47834 processed_pseudogene Interval_73367 chr17 36808508 36809254 + 0 NA Intergenic Intergenic -3290 ENSMUSG00000037130.4 ENSMUSG00000037130 ENSMUST00000041398 H2-M10.6 protein_coding Interval_13827 chr10 23198103 23198595 + 0 NA intron (ENSMUSG00000010461.15, intron 4 of 19) protein_coding-intron (ENSMUSG00000010461.15, intron 3 of 18) -31378 ENSMUSG00000094033.1 ENSMUSG00000094033 ENSMUST00000178790 Gm24655 snRNA Interval_7973 chr1 134961848 134963088 + 0 NA promoter-TSS (ENSMUSG00000026429.9) protein_coding-promoter-TSS (ENSMUSG00000026429.9) -150 ENSMUSG00000026429.9 ENSMUSG00000026429 ENSMUST00000139617 Ube2t protein_coding Interval_149540 chr7 99444151 99444433 + 0 NA intron (ENSMUSG00000035314.10, intron 4 of 15) protein_coding-intron (ENSMUSG00000035314.10, intron 7 of 17) 20179 ENSMUSG00000035314.10 ENSMUSG00000035314 ENSMUST00000208061 Gdpd5 protein_coding Interval_52471 chr14 46787628 46788714 + 0 NA exon (ENSMUSG00000115003.1, exon 1 of 1) antisense-exon (ENSMUSG00000115003.1, exon 1 of 1) 538 ENSMUSG00000115003.1 ENSMUSG00000115003 ENSMUST00000226700 Gm48933 antisense Interval_155873 chr8 40532522 40532719 + 0 NA intron (ENSMUSG00000031600.11, intron 4 of 7) protein_coding-intron (ENSMUSG00000031600.11, intron 4 of 11) -10804 ENSMUSG00000031600.11 ENSMUSG00000031600 ENSMUST00000238628 Vps37a protein_coding Interval_20119 chr10 115025543 115025844 + 0 NA Intergenic Intergenic 34152 ENSMUSG00000096208.1 ENSMUSG00000096208 ENSMUST00000178475 Gm22070 snRNA Interval_115017 chr4 88513847 88514842 + 0 NA Intergenic Intergenic 8430 ENSMUSG00000048806.4 ENSMUSG00000048806 ENSMUST00000055671 Ifnb1 protein_coding Interval_148919 chr7 90059328 90060880 + 0 NA Intergenic Intergenic 17407 ENSMUSG00000108897.1 ENSMUSG00000108897 ENSMUST00000208325 Gm44861 TEC Interval_145160 chr7 30362695 30363456 + 0 NA promoter-TSS (ENSMUSG00000036957.8) protein_coding-promoter-TSS (ENSMUSG00000036957.8) -303 ENSMUSG00000036957.8 ENSMUSG00000036957 ENSMUST00000046351 Lrfn3 protein_coding Interval_25741 chr11 51262630 51264604 + 0 NA promoter-TSS (ENSMUSG00000045942.13) protein_coding-promoter-TSS (ENSMUSG00000045942.13) 1887 ENSMUSG00000020385.16 ENSMUSG00000020385 ENSMUST00000143468 Clk4 protein_coding Interval_5677 chr1 90849715 90850125 + 0 NA Intergenic Intergenic -5949 ENSMUSG00000048126.16 ENSMUSG00000048126 ENSMUST00000187753 Col6a3 protein_coding Interval_716 chr1 10118537 10118764 + 0 NA intron (ENSMUSG00000056763.16, intron 4 of 9) protein_coding-intron (ENSMUSG00000056763.16, intron 23 of 29) 23051 ENSMUSG00000067851.11 ENSMUSG00000067851 ENSMUST00000186720 Arfgef1 protein_coding Interval_61056 chr15 78990917 78991210 + 0 NA exon (ENSMUSG00000033088.19, exon 4 of 14) protein_coding-exon (ENSMUSG00000033088.19, exon 4 of 14) -11160 ENSMUSG00000099180.1 ENSMUSG00000099180 ENSMUST00000183598 Mir6956 miRNA Interval_57421 chr15 10679260 10680215 + 0 NA intron (ENSMUSG00000022246.14, intron 2 of 16) protein_coding-intron (ENSMUSG00000022246.14, intron 2 of 17) 34361 ENSMUSG00000022246.14 ENSMUSG00000022246 ENSMUST00000227366 Rai14 protein_coding Interval_119025 chr4 135060739 135061600 + 0 NA Intergenic Intergenic 59278 ENSMUSG00000086884.1 ENSMUSG00000086884 ENSMUST00000146152 Gm16225 lincRNA Interval_111317 chr4 18598332 18598655 + 0 NA intron (ENSMUSG00000087402.1, intron 2 of 10) processed_transcript-intron (ENSMUSG00000087402.1, intron 2 of 10) -110255 ENSMUSG00000089578.1 ENSMUSG00000089578 ENSMUST00000158953 Gm25971 misc_RNA Interval_66552 chr16 35050150 35051363 + 0 NA intron (ENSMUSG00000035376.10, intron 1 of 3) protein_coding-intron (ENSMUSG00000035376.10, intron 3 of 6) 2141 ENSMUSG00000035376.10 ENSMUSG00000035376 ENSMUST00000231556 Hacd2 protein_coding Interval_35988 chr12 33138908 33139201 + 0 NA TTS (ENSMUSG00000084979.1) lincRNA-TTS (ENSMUSG00000084979.1) 8542 ENSMUSG00000052125.16 ENSMUSG00000052125 ENSMUST00000172344 F730043M19Rik bidirectional_promoter_lncRNA Interval_113293 chr4 53210896 53211387 + 0 NA intron (ENSMUSG00000087192.7, intron 4 of 7) processed_transcript-intron (ENSMUSG00000087192.7, intron 4 of 7) 6420 ENSMUSG00000087192.7 ENSMUSG00000087192 ENSMUST00000139222 4930412L05Rik processed_transcript Interval_90906 chr2 33410958 33412782 + 0 NA TTS (ENSMUSG00000068966.10) protein_coding-TTS (ENSMUSG00000068966.10) 19447 ENSMUSG00000068966.10 ENSMUSG00000068966 ENSMUST00000134589 Zbtb34 protein_coding Interval_40801 chr12 108503403 108504357 + 0 NA intron (ENSMUSG00000058070.14, intron 6 of 6) protein_coding-intron (ENSMUSG00000058070.14, intron 5 of 21) 32027 ENSMUSG00000058070.14 ENSMUSG00000058070 ENSMUST00000123035 Eml1 protein_coding Interval_140047 chr6 113637930 113638869 + 0 NA promoter-TSS (ENSMUSG00000060477.14) protein_coding-promoter-TSS (ENSMUSG00000060477.14) -137 ENSMUSG00000060477.14 ENSMUSG00000060477 ENSMUST00000143948 Irak2 protein_coding Interval_13881 chr10 24191774 24193037 + 0 NA Intergenic Intergenic -31140 ENSMUSG00000020000.7 ENSMUSG00000020000 ENSMUST00000154916 Moxd1 protein_coding Interval_95948 chr2 118619636 118620792 + 0 NA intron (ENSMUSG00000040084.9, intron 9 of 22) protein_coding-intron (ENSMUSG00000040084.9, intron 9 of 22) -10363 ENSMUSG00000040084.9 ENSMUSG00000040084 ENSMUST00000126013 Bub1b protein_coding Interval_42038 chr13 6673628 6675697 + 0 NA Intergenic Intergenic 1523 ENSMUSG00000113545.1 ENSMUSG00000113545 ENSMUST00000223351 Gm48238 processed_pseudogene Interval_105398 chr3 85981628 85982005 + 0 NA intron (ENSMUSG00000028082.14, intron 1 of 20) protein_coding-intron (ENSMUSG00000028082.14, intron 1 of 20) -18906 ENSMUSG00000098444.1 ENSMUSG00000098444 ENSMUST00000185022 Gm27811 snRNA Interval_111995 chr4 33101063 33101581 + 0 NA Intergenic Intergenic 19817 ENSMUSG00000023267.10 ENSMUSG00000023267 ENSMUST00000147889 Gabrr2 protein_coding Interval_114996 chr4 88280484 88281031 + 0 NA intron (ENSMUSG00000038368.16, intron 16 of 41) protein_coding-intron (ENSMUSG00000038368.16, intron 18 of 43) -119593 ENSMUSG00000038368.16 ENSMUSG00000038368 ENSMUST00000107147 Focad protein_coding Interval_22187 chr11 6960932 6963013 + 0 NA Intergenic Intergenic -99668 ENSMUSG00000082333.1 ENSMUSG00000082333 ENSMUST00000118142 Gm11984 processed_pseudogene Interval_35427 chr12 21559927 21560157 + 0 NA Intergenic Intergenic 16735 ENSMUSG00000109975.1 ENSMUSG00000109975 ENSMUST00000209258 Gm19196 transcribed_unprocessed_pseudogene Interval_135695 chr6 43551907 43552493 + 0 NA intron (ENSMUSG00000029735.17, intron 2 of 6) protein_coding-intron (ENSMUSG00000029735.17, intron 4 of 8) 73766 ENSMUSG00000029735.17 ENSMUSG00000029735 ENSMUST00000114643 Tpk1 protein_coding Interval_13826 chr10 23195078 23196275 + 0 NA intron (ENSMUSG00000010461.15, intron 4 of 19) protein_coding-intron (ENSMUSG00000010461.15, intron 3 of 18) -28705 ENSMUSG00000094033.1 ENSMUSG00000094033 ENSMUST00000178790 Gm24655 snRNA Interval_71691 chr17 25462429 25462713 + 0 NA intron (ENSMUSG00000024175.2, intron 1 of 5) protein_coding-intron (ENSMUSG00000024175.2, intron 1 of 5) -9026 ENSMUSG00000024175.2 ENSMUSG00000024175 ENSMUST00000234436 Tekt4 protein_coding Interval_117458 chr4 123841951 123842895 + 0 NA intron (ENSMUSG00000086275.1, intron 3 of 3) antisense-intron (ENSMUSG00000086275.1, intron 3 of 3) 4319 ENSMUSG00000082310.1 ENSMUSG00000082310 ENSMUST00000117451 Gm12904 processed_pseudogene Interval_67225 chr16 44547748 44548361 + 0 NA intron (ENSMUSG00000022687.12, intron 1 of 18) protein_coding-intron (ENSMUSG00000022687.12, intron 1 of 18) 10075 ENSMUSG00000093046.1 ENSMUSG00000093046 ENSMUST00000175305 Mir3081 miRNA Interval_134128 chr6 21100330 21100586 + 0 NA Intergenic Intergenic -27698 ENSMUSG00000088458.1 ENSMUSG00000088458 ENSMUST00000157833 Gm26373 snRNA Interval_121715 chr5 5663302 5664717 + 0 NA promoter-TSS (ENSMUSG00000040473.15) protein_coding-promoter-TSS (ENSMUSG00000040473.15) 19054 ENSMUSG00000015653.13 ENSMUSG00000015653 ENSMUST00000150238 Steap2 protein_coding Interval_173543 chrX 99074144 99075292 + 0 NA TTS (ENSMUSG00000031216.13) protein_coding-TTS (ENSMUSG00000031216.13) 7684 ENSMUSG00000083310.2 ENSMUSG00000083310 ENSMUST00000119692 Gm5760 processed_pseudogene Interval_52400 chr14 45618297 45618554 + 0 NA TTS (ENSMUSG00000037697.19) protein_coding-TTS (ENSMUSG00000037697.19) -4359 ENSMUSG00000115148.1 ENSMUSG00000115148 ENSMUST00000227258 Gm49125 TEC Interval_55569 chr14 92860803 92861197 + 0 NA TTS (ENSMUSG00000115720.1) lincRNA-TTS (ENSMUSG00000115720.1) 5566 ENSMUSG00000115720.1 ENSMUSG00000115720 ENSMUST00000226822 4930433E05Rik lincRNA Interval_39574 chr12 90975155 90976791 + 0 NA Intergenic Intergenic -5252 ENSMUSG00000084566.1 ENSMUSG00000084566 ENSMUST00000122617 Gm26477 misc_RNA Interval_103248 chr3 37468310 37468924 + 0 NA intron (ENSMUSG00000027722.14, intron 14 of 16) protein_coding-intron (ENSMUSG00000027722.14, intron 14 of 15) -20210 ENSMUSG00000106166.1 ENSMUSG00000106166 ENSMUST00000198333 Gm43484 TEC Interval_58983 chr15 41314327 41315626 + 0 NA Intergenic Intergenic -71818 ENSMUSG00000116178.1 ENSMUSG00000116178 ENSMUST00000229823 Gm49529 processed_pseudogene Interval_158508 chr8 84149391 84149836 + 0 NA intron (ENSMUSG00000008129.14, intron 2 of 4) protein_coding-intron (ENSMUSG00000008129.14, intron 2 of 7) 1588 ENSMUSG00000008129.14 ENSMUSG00000008129 ENSMUST00000093375 4930432K21Rik protein_coding Interval_166259 chr9 57841012 57841241 + 0 NA Intergenic Intergenic -44905 ENSMUSG00000004661.15 ENSMUSG00000004661 ENSMUST00000167670 Arid3b protein_coding Interval_30487 chr11 94676719 94677870 + 0 NA promoter-TSS (ENSMUSG00000085051.1) processed_transcript-promoter-TSS (ENSMUSG00000085051.1) 119 ENSMUSG00000020868.15 ENSMUSG00000020868 ENSMUST00000174178 Xylt2 protein_coding Interval_97395 chr2 135744509 135745395 + 0 NA intron (ENSMUSG00000039943.16, intron 2 of 2) protein_coding-intron (ENSMUSG00000039943.16, intron 1 of 36) 3122 ENSMUSG00000039943.16 ENSMUSG00000039943 ENSMUST00000147122 Plcb4 protein_coding Interval_42027 chr13 6625702 6626877 + 0 NA intron (ENSMUSG00000021196.14, intron 2 of 15) protein_coding-intron (ENSMUSG00000021196.14, intron 2 of 21) -28410 ENSMUSG00000021196.14 ENSMUSG00000021196 ENSMUST00000136585 Pfkp protein_coding Interval_116665 chr4 116530943 116531717 + 0 NA intron (ENSMUSG00000028696.12, intron 7 of 8) protein_coding-intron (ENSMUSG00000028696.12, intron 7 of 8) -20410 ENSMUSG00000087299.1 ENSMUSG00000087299 ENSMUST00000138426 Gm12953 antisense Interval_110292 chr3 156074831 156075265 + 0 NA Intergenic Intergenic 14157 ENSMUSG00000105949.1 ENSMUSG00000105949 ENSMUST00000195916 Gm6510 processed_pseudogene Interval_102874 chr3 32454510 32454820 + 0 NA promoter-TSS (ENSMUSG00000103039.1) TEC-promoter-TSS (ENSMUSG00000103039.1) 78 ENSMUSG00000103039.1 ENSMUSG00000103039 ENSMUST00000192994 Gm37123 TEC Interval_129347 chr5 119359628 119360602 + 0 NA Intergenic Intergenic 62870 ENSMUSG00000084548.1 ENSMUSG00000084548 ENSMUST00000122599 n-R5s175 rRNA Interval_48092 chr13 95950703 95951685 + 0 NA Intergenic Intergenic 39032 ENSMUSG00000051111.16 ENSMUSG00000051111 ENSMUST00000220740 Sv2c protein_coding Interval_167415 chr9 68889324 68889604 + 0 NA intron (ENSMUSG00000032238.17, intron 1 of 5) protein_coding-intron (ENSMUSG00000032238.17, intron 1 of 10) 235573 ENSMUSG00000032238.17 ENSMUSG00000032238 ENSMUST00000113624 Rora protein_coding Interval_107031 chr3 103068484 103068759 + 0 NA TTS (ENSMUSG00000027852.14) protein_coding-TTS (ENSMUSG00000027852.14) -2553 ENSMUSG00000104671.1 ENSMUSG00000104671 ENSMUST00000196302 Gm43062 lincRNA Interval_35319 chr12 20551502 20553868 + 0 NA Intergenic Intergenic 7484 ENSMUSG00000113820.2 ENSMUSG00000113820 ENSMUST00000221504 Gm4012 unprocessed_pseudogene Interval_172437 chrX 20161800 20162645 + 0 NA promoter-TSS (ENSMUSG00000037341.14) protein_coding-promoter-TSS (ENSMUSG00000037341.14) -22 ENSMUSG00000037341.14 ENSMUSG00000037341 ENSMUST00000130938 Slc9a7 protein_coding Interval_155802 chr8 38818432 38819789 + 0 NA Intergenic Intergenic -80558 ENSMUSG00000118594.1 ENSMUSG00000118594 ENSMUST00000239372 AC163680.1 unprocessed_pseudogene Interval_26856 chr11 61105860 61106374 + 0 NA Intergenic Intergenic -20641 ENSMUSG00000010142.12 ENSMUSG00000010142 ENSMUST00000123378 Tnfrsf13b protein_coding Interval_173097 chrX 71589292 71590148 + 0 NA Intergenic Intergenic 31937 ENSMUSG00000015217.11 ENSMUSG00000015217 ENSMUST00000132145 Hmgb3 protein_coding Interval_41187 chr12 111692406 111694917 + 0 NA Intergenic Intergenic -9421 ENSMUSG00000112991.1 ENSMUSG00000112991 ENSMUST00000221152 Gm36635 lincRNA Interval_86465 chr19 40760905 40762582 + 0 NA intron (ENSMUSG00000108929.2, intron 6 of 33) protein_coding-intron (ENSMUSG00000108929.2, intron 3 of 6) 12990 ENSMUSG00000108929.2 ENSMUSG00000108929 ENSMUST00000207791 Cc2d2b protein_coding Interval_44842 chr13 49021420 49022323 + 0 NA Intergenic Intergenic -53854 ENSMUSG00000038014.7 ENSMUSG00000038014 ENSMUST00000060805 Fam120a protein_coding Interval_108726 chr3 130750572 130751129 + 0 NA intron (ENSMUSG00000105789.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000105789.1, intron 1 of 1) -6611 ENSMUSG00000106260.1 ENSMUSG00000106260 ENSMUST00000197278 Gm43524 processed_pseudogene Interval_102400 chr3 23887411 23887588 + 0 NA intron (ENSMUSG00000102758.3, intron 11 of 13) protein_coding-intron (ENSMUSG00000102758.3, intron 1 of 3) 426449 ENSMUSG00000102203.1 ENSMUSG00000102203 ENSMUST00000194267 4930412E21Rik lincRNA Interval_154925 chr8 25099755 25099997 + 0 NA intron (ENSMUSG00000031557.16, intron 1 of 11) protein_coding-intron (ENSMUSG00000031557.16, intron 1 of 11) 2278 ENSMUSG00000031557.16 ENSMUSG00000031557 ENSMUST00000125466 Plekha2 protein_coding Interval_57392 chr15 10516709 10518253 + 0 NA intron (ENSMUSG00000022249.14, intron 8 of 11) protein_coding-intron (ENSMUSG00000022249.14, intron 8 of 10) 9400 ENSMUSG00000091615.2 ENSMUSG00000091615 ENSMUST00000168549 Gm17044 processed_pseudogene Interval_111193 chr4 14607713 14608014 + 0 NA intron (ENSMUSG00000040569.13, intron 1 of 3) protein_coding-intron (ENSMUSG00000040569.13, intron 2 of 18) 13634 ENSMUSG00000040569.13 ENSMUSG00000040569 ENSMUST00000143105 Slc26a7 protein_coding Interval_23109 chr11 19985387 19985731 + 0 NA intron (ENSMUSG00000045671.17, intron 1 of 5) protein_coding-intron (ENSMUSG00000045671.17, intron 1 of 5) 30989 ENSMUSG00000045671.17 ENSMUSG00000045671 ENSMUST00000123036 Spred2 protein_coding Interval_151393 chr7 122055370 122055970 + 0 NA exon (ENSMUSG00000030871.11, exon 3 of 9) protein_coding-exon (ENSMUSG00000030871.11, exon 3 of 9) 11341 ENSMUSG00000030871.11 ENSMUSG00000030871 ENSMUST00000033159 Ears2 protein_coding Interval_146289 chr7 45153796 45155935 + 0 NA promoter-TSS (ENSMUSG00000007833.15) protein_coding-promoter-TSS (ENSMUSG00000007833.15) -365 ENSMUSG00000007833.15 ENSMUSG00000007833 ENSMUST00000209889 Aldh16a1 protein_coding Interval_147530 chr7 68080240 68080691 + 0 NA intron (ENSMUSG00000005533.10, intron 2 of 20) protein_coding-intron (ENSMUSG00000005533.10, intron 2 of 20) -131373 ENSMUSG00000005533.10 ENSMUSG00000005533 ENSMUST00000208871 Igf1r protein_coding Interval_105295 chr3 84647591 84648152 + 0 NA intron (ENSMUSG00000102805.5, intron 3 of 9) protein_coding-intron (ENSMUSG00000102805.5, intron 3 of 9) -18339 ENSMUSG00000056498.13 ENSMUSG00000056498 ENSMUST00000128344 Tmem154 protein_coding Interval_90742 chr2 32228992 32230966 + 0 NA intron (ENSMUSG00000039262.16, intron 28 of 28) protein_coding-intron (ENSMUSG00000039262.16, intron 29 of 29) 4326 ENSMUSG00000094251.1 ENSMUSG00000094251 ENSMUST00000083112 Gm25632 snoRNA Interval_172732 chrX 48033608 48035109 + 0 NA intron (ENSMUSG00000037010.7, intron 1 of 2) protein_coding-intron (ENSMUSG00000037010.7, intron 1 of 2) 495 ENSMUSG00000037010.7 ENSMUSG00000037010 ENSMUST00000039026 Apln protein_coding Interval_141973 chr6 136235970 136236696 + 0 NA Intergenic Intergenic -44894 ENSMUSG00000087878.1 ENSMUSG00000087878 ENSMUST00000157253 Gm26105 snRNA Interval_128664 chr5 114596336 114597246 + 0 NA intron (ENSMUSG00000041930.7, intron 2 of 2) protein_coding-intron (ENSMUSG00000041930.7, intron 2 of 2) 28774 ENSMUSG00000041930.7 ENSMUSG00000041930 ENSMUST00000130983 Fam222a protein_coding Interval_8467 chr1 139661351 139661691 + 0 NA promoter-TSS (ENSMUSG00000090623.3) unprocessed_pseudogene-promoter-TSS (ENSMUSG00000090623.3) -622 ENSMUSG00000090623.3 ENSMUSG00000090623 ENSMUST00000170441 Cfhr3 unprocessed_pseudogene Interval_165044 chr9 44112989 44113958 + 0 NA promoter-TSS (ENSMUSG00000053128.15) protein_coding-promoter-TSS (ENSMUSG00000053128.15) 0 ENSMUSG00000053128.15 ENSMUSG00000053128 ENSMUST00000215685 Rnf26 protein_coding Interval_10168 chr1 166304645 166305152 + 0 NA intron (ENSMUSG00000040612.13, intron 7 of 8) protein_coding-intron (ENSMUSG00000040612.13, intron 7 of 9) 4687 ENSMUSG00000091393.1 ENSMUSG00000091393 ENSMUST00000168347 5330438I03Rik antisense Interval_150166 chr7 107540200 107540449 + 0 NA intron (ENSMUSG00000062542.11, intron 2 of 2) protein_coding-intron (ENSMUSG00000062542.11, intron 6 of 6) -27442 ENSMUSG00000051041.8 ENSMUSG00000051041 ENSMUST00000239087 Olfml1 protein_coding Interval_7579 chr1 132306115 132307113 + 0 NA exon (ENSMUSG00000042115.4, exon 5 of 5) protein_coding-exon (ENSMUSG00000042115.4, exon 5 of 5) 7988 ENSMUSG00000042115.4 ENSMUSG00000042115 ENSMUST00000046071 Klhdc8a protein_coding Interval_166819 chr9 62974449 62974872 + 0 NA intron (ENSMUSG00000032405.10, intron 1 of 4) protein_coding-intron (ENSMUSG00000032405.10, intron 1 of 13) 13264 ENSMUSG00000032405.10 ENSMUSG00000032405 ENSMUST00000215455 Pias1 protein_coding Interval_55827 chr14 101012091 101012356 + 0 NA Intergenic Intergenic 188107 ENSMUSG00000042888.10 ENSMUSG00000042888 ENSMUST00000187304 Prr30 protein_coding Interval_158441 chr8 83747115 83748366 + 0 NA Intergenic Intergenic -1764 ENSMUSG00000110570.1 ENSMUSG00000110570 ENSMUST00000211959 Gm45778 processed_pseudogene Interval_77034 chr17 85845003 85845328 + 0 NA Intergenic Intergenic -21121 ENSMUSG00000100345.1 ENSMUSG00000100345 ENSMUST00000186162 Gm29418 lincRNA Interval_88149 chr19 59805199 59805573 + 0 NA Intergenic Intergenic 95676 ENSMUSG00000090965.1 ENSMUSG00000090965 ENSMUST00000164379 Gm17203 lincRNA Interval_171230 chr9 115432349 115433258 + 0 NA Intergenic Intergenic 5778 ENSMUSG00000074034.1 ENSMUSG00000074034 ENSMUST00000075898 Gm5921 processed_pseudogene Interval_22804 chr11 16036770 16037038 + 0 NA promoter-TSS (ENSMUSG00000104323.1) TEC-promoter-TSS (ENSMUSG00000104323.1) -889 ENSMUSG00000104323.1 ENSMUSG00000104323 ENSMUST00000193500 Gm37319 TEC Interval_126657 chr5 91818126 91818364 + 0 NA Intergenic Intergenic -11172 ENSMUSG00000096726.2 ENSMUSG00000096726 ENSMUST00000178933 Gm5558 processed_pseudogene Interval_75564 chr17 68130630 68131130 + 0 NA intron (ENSMUSG00000117243.1, intron 1 of 3) lincRNA-intron (ENSMUSG00000117243.1, intron 1 of 3) -16494 ENSMUSG00000117208.1 ENSMUSG00000117208 ENSMUST00000233735 Gm49945 lincRNA Interval_43501 chr13 31959110 31959412 + 0 NA intron (ENSMUSG00000038372.14, intron 7 of 10) protein_coding-intron (ENSMUSG00000038372.14, intron 7 of 10) -11825 ENSMUSG00000113935.1 ENSMUSG00000113935 ENSMUST00000221737 Gm35732 antisense Interval_112743 chr4 44555351 44556688 + 0 NA intron (ENSMUSG00000014030.15, intron 6 of 7) protein_coding-intron (ENSMUSG00000014030.15, intron 6 of 7) 51549 ENSMUSG00000092761.1 ENSMUSG00000092761 ENSMUST00000175020 Mir5120 miRNA Interval_2790 chr1 45236887 45237762 + 0 NA Intergenic Intergenic 59257 ENSMUSG00000101937.1 ENSMUSG00000101937 ENSMUST00000189212 Gm5268 processed_pseudogene Interval_75665 chr17 70332767 70333242 + 0 NA intron (ENSMUSG00000003279.17, intron 4 of 8) protein_coding-intron (ENSMUSG00000003279.17, intron 4 of 14) -407173 ENSMUSG00000117078.1 ENSMUSG00000117078 ENSMUST00000232868 Gm4561 processed_pseudogene Interval_21408 chr10 128411156 128412189 + 0 NA promoter-TSS (ENSMUSG00000025373.14) protein_coding-promoter-TSS (ENSMUSG00000025373.14) -2040 ENSMUSG00000025374.13 ENSMUSG00000025374 ENSMUST00000171370 Nabp2 protein_coding Interval_83835 chr19 4988880 4989939 + 0 NA intron (ENSMUSG00000045903.9, intron 1 of 6) protein_coding-intron (ENSMUSG00000045903.9, intron 1 of 7) 495 ENSMUSG00000045903.9 ENSMUSG00000045903 ENSMUST00000237881 Npas4 protein_coding Interval_4039 chr1 66767198 66768443 + 0 NA exon (ENSMUSG00000102559.1, exon 1 of 1) TEC-exon (ENSMUSG00000102559.1, exon 1 of 1) 911 ENSMUSG00000102559.1 ENSMUSG00000102559 ENSMUST00000195411 Gm37570 TEC Interval_60903 chr15 77750449 77750855 + 0 NA intron (ENSMUSG00000056656.6, intron 4 of 4) protein_coding-intron (ENSMUSG00000056656.6, intron 3 of 3) 6351 ENSMUSG00000056656.6 ENSMUSG00000056656 ENSMUST00000229332 Apol8 protein_coding Interval_33759 chr11 118308054 118309006 + 0 NA intron (ENSMUSG00000017466.9, intron 4 of 4) protein_coding-intron (ENSMUSG00000017466.9, intron 4 of 4) -18458 ENSMUSG00000033909.17 ENSMUSG00000033909 ENSMUST00000151433 Usp36 protein_coding Interval_66422 chr16 33766422 33767468 + 0 NA TTS (ENSMUSG00000075254.12) protein_coding-TTS (ENSMUSG00000075254.12) -27092 ENSMUSG00000022824.12 ENSMUSG00000022824 ENSMUST00000023520 Muc13 protein_coding Interval_5368 chr1 87963491 87963773 + 0 NA intron (ENSMUSG00000005501.14, intron 18 of 27) protein_coding-intron (ENSMUSG00000005501.14, intron 18 of 27) 3563 ENSMUSG00000005501.14 ENSMUSG00000005501 ENSMUST00000189586 Usp40 protein_coding Interval_131072 chr5 134936321 134937997 + 0 NA exon (ENSMUSG00000040557.14, exon 7 of 7) protein_coding-exon (ENSMUSG00000040557.14, exon 7 of 7) 4635 ENSMUSG00000040557.14 ENSMUSG00000040557 ENSMUST00000148286 Mettl27 protein_coding Interval_85660 chr19 29418086 29418366 + 0 NA intron (ENSMUSG00000016498.10, intron 1 of 5) protein_coding-intron (ENSMUSG00000016498.10, intron 1 of 5) -3833 ENSMUSG00000016498.10 ENSMUSG00000016498 ENSMUST00000235164 Pdcd1lg2 protein_coding Interval_160322 chr8 108363468 108364509 + 0 NA intron (ENSMUSG00000038872.10, intron 3 of 15) protein_coding-intron (ENSMUSG00000038872.10, intron 3 of 15) 173233 ENSMUSG00000109868.1 ENSMUSG00000109868 ENSMUST00000211262 Gm39244 lincRNA Interval_15628 chr10 52433606 52434113 + 0 NA TTS (ENSMUSG00000023068.16) protein_coding-TTS (ENSMUSG00000023068.16) 4928 ENSMUSG00000023068.16 ENSMUSG00000023068 ENSMUST00000218983 Nus1 protein_coding Interval_138711 chr6 91335443 91335927 + 0 NA Intergenic Intergenic 29412 ENSMUSG00000030093.7 ENSMUSG00000030093 ENSMUST00000132936 Wnt7a protein_coding Interval_10589 chr1 172052691 172054544 + 0 NA exon (ENSMUSG00000051251.3, exon 2 of 2) protein_coding-exon (ENSMUSG00000051251.3, exon 2 of 2) 3956 ENSMUSG00000051251.3 ENSMUSG00000051251 ENSMUST00000059794 Nhlh1 protein_coding Interval_71896 chr17 26855885 26856171 + 0 NA Intergenic Intergenic -5393 ENSMUSG00000092539.2 ENSMUSG00000092539 ENSMUST00000172664 Gm20468 lincRNA Interval_30266 chr11 92458538 92459322 + 0 NA Intergenic Intergenic 312043 ENSMUSG00000081363.2 ENSMUSG00000081363 ENSMUST00000118237 Gm11500 processed_pseudogene Interval_95551 chr2 112207921 112208171 + 0 NA Intergenic Intergenic -33439 ENSMUSG00000027134.4 ENSMUSG00000027134 ENSMUST00000129503 Lpcat4 protein_coding Interval_127541 chr5 104976650 104976863 + 0 NA intron (ENSMUSG00000029299.14, intron 1 of 13) protein_coding-intron (ENSMUSG00000029299.14, intron 2 of 15) 1078 ENSMUSG00000029299.14 ENSMUSG00000029299 ENSMUST00000130644 Abcg3 protein_coding Interval_11086 chr1 179245498 179245745 + 0 NA intron (ENSMUSG00000055067.15, intron 1 of 8) protein_coding-intron (ENSMUSG00000055067.15, intron 1 of 8) 272384 ENSMUSG00000055067.15 ENSMUSG00000055067 ENSMUST00000194237 Smyd3 protein_coding Interval_151162 chr7 118928853 118930256 + 0 NA intron (ENSMUSG00000073856.11, intron 6 of 7) protein_coding-intron (ENSMUSG00000073856.11, intron 7 of 8) 40132 ENSMUSG00000109517.1 ENSMUSG00000109517 ENSMUST00000208287 Gm44763 antisense Interval_21101 chr10 126369625 126370686 + 0 NA Intergenic Intergenic -1820 ENSMUSG00000112482.1 ENSMUSG00000112482 ENSMUST00000218075 1700025K04Rik lincRNA Interval_132467 chr5 145132989 145133690 + 0 NA exon (ENSMUSG00000029623.14, exon 1 of 1) protein_coding-exon (ENSMUSG00000029623.14, exon 1 of 1) 2287 ENSMUSG00000029623.14 ENSMUSG00000029623 ENSMUST00000148781 Pdap1 protein_coding Interval_78574 chr18 14849713 14850045 + 0 NA intron (ENSMUSG00000054321.7, intron 13 of 14) protein_coding-intron (ENSMUSG00000054321.7, intron 13 of 14) 19211 ENSMUSG00000117530.1 ENSMUSG00000117530 ENSMUST00000234669 Gm21055 processed_pseudogene Interval_133120 chr5 149993610 149994828 + 0 NA Intergenic Intergenic 9095 ENSMUSG00000107056.1 ENSMUSG00000107056 ENSMUST00000202470 Gm21048 processed_pseudogene Interval_57698 chr15 15908203 15909129 + 0 NA Intergenic Intergenic 32875 ENSMUSG00000115524.1 ENSMUSG00000115524 ENSMUST00000228560 Gm49122 processed_pseudogene Interval_159308 chr8 93154156 93154733 + 0 NA promoter-TSS (ENSMUSG00000110714.1) unprocessed_pseudogene-promoter-TSS (ENSMUSG00000110714.1) -328 ENSMUSG00000110714.1 ENSMUSG00000110714 ENSMUST00000212493 Gm45910 unprocessed_pseudogene Interval_159236 chr8 92042411 92043572 + 0 NA Intergenic Intergenic 3074 ENSMUSG00000065636.1 ENSMUSG00000065636 ENSMUST00000083702 Gm24254 snRNA Interval_98329 chr2 151542093 151543974 + 0 NA promoter-TSS (ENSMUSG00000032966.14) protein_coding-promoter-TSS (ENSMUSG00000032966.14) 296 ENSMUSG00000032966.14 ENSMUSG00000032966 ENSMUST00000132614 Fkbp1a protein_coding Interval_59429 chr15 53089339 53090067 + 0 NA TTS (ENSMUSG00000061731.9) protein_coding-TTS (ENSMUSG00000061731.9) 18165 ENSMUSG00000061731.9 ENSMUSG00000061731 ENSMUST00000140798 Ext1 protein_coding Interval_36922 chr12 55359704 55359905 + 0 NA intron (ENSMUSG00000021023.14, intron 4 of 6) protein_coding-intron (ENSMUSG00000021023.14, intron 4 of 6) -24418 ENSMUSG00000021024.14 ENSMUSG00000021024 ENSMUST00000162972 Psma6 protein_coding Interval_91698 chr2 48394666 48394936 + 0 NA intron (ENSMUSG00000086353.1, intron 1 of 5) lincRNA-intron (ENSMUSG00000086353.1, intron 1 of 5) 6764 ENSMUSG00000083866.1 ENSMUSG00000083866 ENSMUST00000120948 Gm13472 processed_pseudogene Interval_43417 chr13 30530727 30531225 + 0 NA Intergenic Intergenic 14386 ENSMUSG00000038462.3 ENSMUSG00000038462 ENSMUST00000042834 Uqcrfs1 protein_coding Interval_129588 chr5 121169549 121169811 + 0 NA intron (ENSMUSG00000043733.14, intron 2 of 14) protein_coding-intron (ENSMUSG00000043733.14, intron 2 of 15) 15316 ENSMUSG00000106940.1 ENSMUSG00000106940 ENSMUST00000200872 Gm42930 TEC Interval_117676 chr4 125502824 125503325 + 0 NA intron (ENSMUSG00000001985.9, intron 1 of 15) protein_coding-intron (ENSMUSG00000001985.9, intron 1 of 15) -1214 ENSMUSG00000082062.1 ENSMUSG00000082062 ENSMUST00000118517 Ftl2-ps processed_pseudogene Interval_83073 chr18 81065657 81065858 + 0 NA Intergenic Intergenic -17307 ENSMUSG00000118262.1 ENSMUSG00000118262 ENSMUST00000237649 Gm50423 lincRNA Interval_98530 chr2 153031282 153033087 + 0 NA exon (ENSMUSG00000042631.7, exon 1 of 3) protein_coding-exon (ENSMUSG00000042631.7, exon 1 of 3) 332 ENSMUSG00000042631.7 ENSMUSG00000042631 ENSMUST00000037235 Xkr7 protein_coding Interval_101160 chr2 178632888 178636007 + 0 NA Intergenic Intergenic 173817 ENSMUSG00000039155.15 ENSMUSG00000039155 ENSMUST00000176869 Cdh26 protein_coding Interval_141347 chr6 127507370 127507723 + 0 NA Intergenic Intergenic 21753 ENSMUSG00000106962.1 ENSMUSG00000106962 ENSMUST00000202455 Gm43633 TEC Interval_103336 chr3 39318218 39318960 + 0 NA Intergenic Intergenic 40314 ENSMUSG00000050533.3 ENSMUSG00000050533 ENSMUST00000056409 Gm9845 processed_pseudogene Interval_137759 chr6 82174574 82175584 + 0 NA Intergenic Intergenic -67095 ENSMUSG00000108224.1 ENSMUSG00000108224 ENSMUST00000204563 Gm31861 processed_pseudogene Interval_69857 chr16 97609774 97611558 + 0 NA exon (ENSMUSG00000000385.8, exon 1 of 4) protein_coding-exon (ENSMUSG00000000385.8, exon 1 of 4) -43329 ENSMUSG00000000385.8 ENSMUSG00000000385 ENSMUST00000232141 Tmprss2 protein_coding Interval_174233 chrX 140460473 140460903 + 0 NA intron (ENSMUSG00000031432.3, intron 1 of 1) protein_coding-intron (ENSMUSG00000031432.3, intron 1 of 6) 4075 ENSMUSG00000031432.3 ENSMUSG00000031432 ENSMUST00000033809 Prps1 protein_coding Interval_139666 chr6 106397124 106398171 + 0 NA intron (ENSMUSG00000064293.14, intron 4 of 9) protein_coding-intron (ENSMUSG00000064293.14, intron 4 of 15) -257856 ENSMUSG00000064293.14 ENSMUSG00000064293 ENSMUST00000142626 Cntn4 protein_coding Interval_97077 chr2 131053843 131056987 + 0 NA promoter-TSS (ENSMUSG00000027318.17) protein_coding-promoter-TSS (ENSMUSG00000027318.17) -889 ENSMUSG00000027318.17 ENSMUSG00000027318 ENSMUST00000124481 Adam33 protein_coding Interval_124312 chr5 43846329 43846585 + 0 NA Intergenic Intergenic -22403 ENSMUSG00000029084.5 ENSMUSG00000029084 ENSMUST00000196600 Cd38 protein_coding Interval_149359 chr7 97683893 97684424 + 0 NA intron (ENSMUSG00000035623.14, intron 14 of 14) protein_coding-intron (ENSMUSG00000035623.14, intron 15 of 15) 12385 ENSMUSG00000086993.1 ENSMUSG00000086993 ENSMUST00000141549 Rsf1os2 antisense Interval_71405 chr17 23559908 23560467 + 0 NA intron (ENSMUSG00000071256.4, intron 2 of 5) protein_coding-intron (ENSMUSG00000071256.4, intron 2 of 5) 4051 ENSMUSG00000071256.4 ENSMUSG00000071256 ENSMUST00000095606 Zfp213 protein_coding Interval_3105 chr1 53374703 53375096 + 0 NA Intergenic Intergenic 11785 ENSMUSG00000099450.1 ENSMUSG00000099450 ENSMUST00000186919 Gm6799 processed_pseudogene Interval_132402 chr5 144727032 144727705 + 0 NA Intergenic Intergenic -3571 ENSMUSG00000082524.3 ENSMUSG00000082524 ENSMUST00000121256 Gm6272 processed_pseudogene Interval_88952 chr2 13453326 13453495 + 0 NA intron (ENSMUSG00000026726.10, intron 1 of 9) protein_coding-intron (ENSMUSG00000026726.10, intron 17 of 66) 2217 ENSMUSG00000026726.10 ENSMUSG00000026726 ENSMUST00000148506 Cubn protein_coding Interval_88002 chr19 57716193 57716695 + 0 NA intron (ENSMUSG00000054843.9, intron 19 of 28) protein_coding-intron (ENSMUSG00000054843.9, intron 19 of 28) 105410 ENSMUSG00000054843.9 ENSMUSG00000054843 ENSMUST00000077282 Atrnl1 protein_coding Interval_70279 chr17 8147015 8148435 + 0 NA promoter-TSS (ENSMUSG00000095687.2) protein_coding-promoter-TSS (ENSMUSG00000095687.2) 60 ENSMUSG00000095687.2 ENSMUSG00000095687 ENSMUST00000097420 Rnaset2a protein_coding Interval_22945 chr11 17761812 17762495 + 0 NA Intergenic Intergenic -122970 ENSMUSG00000082411.1 ENSMUSG00000082411 ENSMUST00000119079 Gm12016 processed_pseudogene Interval_148434 chr7 81219276 81219636 + 0 NA intron (ENSMUSG00000025584.17, intron 1 of 21) protein_coding-intron (ENSMUSG00000025584.17, intron 1 of 21) 3418 ENSMUSG00000083774.1 ENSMUSG00000083774 ENSMUST00000121753 Gm7180 processed_pseudogene Interval_169991 chr9 103469464 103469864 + 0 NA intron (ENSMUSG00000032556.11, intron 1 of 6) protein_coding-intron (ENSMUSG00000032556.11, intron 1 of 6) -19662 ENSMUSG00000085168.2 ENSMUSG00000085168 ENSMUST00000215604 Gm16252 antisense Interval_99548 chr2 163083841 163087029 + 0 NA TTS (ENSMUSG00000017861.11) protein_coding-TTS (ENSMUSG00000017861.11) 2420 ENSMUSG00000070708.5 ENSMUSG00000070708 ENSMUST00000094653 Gtsf1l protein_coding Interval_86778 chr19 43830370 43830958 + 0 NA intron (ENSMUSG00000025194.5, intron 28 of 31) protein_coding-intron (ENSMUSG00000025194.5, intron 28 of 31) 20142 ENSMUSG00000025194.5 ENSMUSG00000025194 ENSMUST00000099413 Abcc2 protein_coding Interval_99725 chr2 164517901 164518245 + 0 NA Intergenic Intergenic 20512 ENSMUSG00000017721.15 ENSMUSG00000017721 ENSMUST00000131976 Pigt protein_coding Interval_14372 chr10 31742180 31743628 + 0 NA intron (ENSMUSG00000069670.8, intron 5 of 6) protein_coding-intron (ENSMUSG00000069670.8, intron 5 of 6) 103746 ENSMUSG00000098038.1 ENSMUSG00000098038 ENSMUST00000183069 Gm8793 processed_pseudogene Interval_166626 chr9 61372188 61374658 + 0 NA promoter-TSS (ENSMUSG00000032280.16) protein_coding-promoter-TSS (ENSMUSG00000032280.16) 1057 ENSMUSG00000032280.16 ENSMUSG00000032280 ENSMUST00000162281 Tle3 protein_coding Interval_109165 chr3 137441920 137443457 + 0 NA Intergenic Intergenic 101514 ENSMUSG00000054690.17 ENSMUSG00000054690 ENSMUST00000197511 Emcn protein_coding Interval_135946 chr6 49034090 49034319 + 0 NA Intergenic Intergenic -2342 ENSMUSG00000029816.10 ENSMUSG00000029816 ENSMUST00000204460 Gpnmb protein_coding Interval_85814 chr19 32117452 32117723 + 0 NA Intergenic Intergenic 91686 ENSMUSG00000118064.1 ENSMUSG00000118064 ENSMUST00000235377 Gm50210 sense_intronic Interval_174234 chrX 140463722 140464512 + 0 NA intron (ENSMUSG00000031432.3, intron 1 of 1) protein_coding-intron (ENSMUSG00000031432.3, intron 1 of 6) 7504 ENSMUSG00000031432.3 ENSMUSG00000031432 ENSMUST00000033809 Prps1 protein_coding Interval_123712 chr5 34669450 34670693 + 0 NA intron (ENSMUSG00000052783.16, intron 2 of 2) protein_coding-intron (ENSMUSG00000052783.16, intron 2 of 15) 19353 ENSMUSG00000085166.1 ENSMUSG00000085166 ENSMUST00000134467 Gm15522 antisense Interval_106694 chr3 99122972 99123187 + 0 NA Intergenic Intergenic 1223 ENSMUSG00000088884.1 ENSMUSG00000088884 ENSMUST00000158259 Gm24216 snoRNA Interval_53454 chr14 57618704 57620498 + 0 NA intron (ENSMUSG00000021952.16, intron 6 of 22) protein_coding-intron (ENSMUSG00000021952.16, intron 6 of 22) 45829 ENSMUSG00000021952.16 ENSMUSG00000021952 ENSMUST00000173638 Xpo4 protein_coding Interval_104511 chr3 67078887 67079206 + 0 NA intron (ENSMUSG00000034544.17, intron 3 of 7) protein_coding-intron (ENSMUSG00000034544.17, intron 2 of 8) 23088 ENSMUSG00000065245.1 ENSMUSG00000065245 ENSMUST00000083311 Gm22295 snRNA Interval_122977 chr5 28099184 28099449 + 0 NA Intergenic Intergenic 24650 ENSMUSG00000045294.11 ENSMUSG00000045294 ENSMUST00000199728 Insig1 protein_coding Interval_15478 chr10 48404121 48404432 + 0 NA Intergenic Intergenic 7391 ENSMUSG00000112062.1 ENSMUSG00000112062 ENSMUST00000219040 Gm47353 TEC Interval_143243 chr7 4707057 4707638 + 0 NA exon (ENSMUSG00000035390.16, exon 14 of 19) protein_coding-exon (ENSMUSG00000035390.16, exon 14 of 19) 16267 ENSMUSG00000035390.16 ENSMUSG00000035390 ENSMUST00000123637 Brsk1 protein_coding Interval_124831 chr5 55981653 55982079 + 0 NA Intergenic Intergenic -175472 ENSMUSG00000105685.1 ENSMUSG00000105685 ENSMUST00000198120 Gm43315 processed_pseudogene Interval_56274 chr14 115669571 115669738 + 0 NA intron (ENSMUSG00000022112.14, intron 6 of 7) protein_coding-intron (ENSMUSG00000022112.14, intron 6 of 7) -113132 ENSMUSG00000093589.1 ENSMUSG00000093589 ENSMUST00000176139 Gm18367 processed_pseudogene Interval_72156 chr17 28323934 28324652 + 0 NA intron (ENSMUSG00000007570.16, intron 9 of 9) protein_coding-intron (ENSMUSG00000007570.16, intron 9 of 9) 4228 ENSMUSG00000117303.1 ENSMUSG00000117303 ENSMUST00000232734 Gm49889 bidirectional_promoter_lncRNA Interval_43778 chr13 36323406 36323638 + 0 NA intron (ENSMUSG00000021420.13, intron 4 of 7) protein_coding-intron (ENSMUSG00000021420.13, intron 4 of 6) -3436 ENSMUSG00000021420.13 ENSMUSG00000021420 ENSMUST00000225048 Fars2 protein_coding Interval_158227 chr8 80127462 80128570 + 0 NA TTS (ENSMUSG00000109593.1) lincRNA-TTS (ENSMUSG00000109593.1) 10651 ENSMUSG00000109593.1 ENSMUSG00000109593 ENSMUST00000210143 Gm45431 lincRNA Interval_80323 chr18 39224090 39224377 + 0 NA intron (ENSMUSG00000036452.18, intron 12 of 22) protein_coding-intron (ENSMUSG00000036452.18, intron 12 of 22) -67202 ENSMUSG00000036452.18 ENSMUSG00000036452 ENSMUST00000133247 Arhgap26 protein_coding Interval_61165 chr15 79616879 79617966 + 0 NA TTS (ENSMUSG00000042564.13) protein_coding-TTS (ENSMUSG00000042564.13) -22629 ENSMUSG00000093223.3 ENSMUSG00000093223 ENSMUST00000175482 Gm27903 miRNA Interval_124039 chr5 37729102 37729318 + 0 NA Intergenic Intergenic -8070 ENSMUSG00000062329.4 ENSMUSG00000062329 ENSMUST00000201048 Cytl1 protein_coding Interval_79542 chr18 33384511 33385265 + 0 NA promoter-TSS (ENSMUSG00000117730.1) processed_pseudogene-promoter-TSS (ENSMUSG00000117730.1) 67 ENSMUSG00000117730.1 ENSMUSG00000117730 ENSMUST00000237135 Gm5503 processed_pseudogene Interval_89076 chr2 15745048 15745901 + 0 NA intron (ENSMUSG00000075520.5, intron 17 of 38) protein_coding-intron (ENSMUSG00000075520.5, intron 17 of 38) -211451 ENSMUSG00000081245.2 ENSMUSG00000081245 ENSMUST00000120219 Gm6587 processed_pseudogene Interval_28331 chr11 75243609 75244379 + 0 NA intron (ENSMUSG00000045287.6, intron 1 of 1) protein_coding-intron (ENSMUSG00000045287.6, intron 1 of 1) 50211 ENSMUSG00000045287.6 ENSMUSG00000045287 ENSMUST00000102514 Rtn4rl1 protein_coding Interval_143530 chr7 12121934 12123097 + 0 NA Intergenic Intergenic -1126 ENSMUSG00000109914.1 ENSMUSG00000109914 ENSMUST00000210346 Gm45498 processed_pseudogene Interval_62343 chr15 90614599 90614797 + 0 NA intron (ENSMUSG00000052560.15, intron 5 of 19) protein_coding-intron (ENSMUSG00000052560.15, intron 5 of 19) 53351 ENSMUSG00000078847.1 ENSMUSG00000078847 ENSMUST00000108774 Gm6746 processed_pseudogene Interval_85341 chr19 24981395 24981626 + 0 NA Intergenic Intergenic -39143 ENSMUSG00000095097.1 ENSMUSG00000095097 ENSMUST00000083233 Gm23658 snoRNA Interval_170086 chr9 104320840 104321778 + 0 NA intron (ENSMUSG00000032561.15, intron 3 of 3) protein_coding-intron (ENSMUSG00000032561.15, intron 4 of 10) 16439 ENSMUSG00000032561.15 ENSMUSG00000032561 ENSMUST00000215852 Acpp protein_coding Interval_111379 chr4 20023715 20024098 + 0 NA intron (ENSMUSG00000073988.13, intron 4 of 4) protein_coding-intron (ENSMUSG00000073988.13, intron 4 of 4) 15968 ENSMUSG00000073988.13 ENSMUSG00000073988 ENSMUST00000098244 Ttpa protein_coding Interval_33874 chr11 119116842 119117205 + 0 NA Intergenic Intergenic -5598 ENSMUSG00000086306.1 ENSMUSG00000086306 ENSMUST00000156576 Gm11754 lincRNA Interval_146585 chr7 47050129 47051216 + 0 NA promoter-TSS (ENSMUSG00000010307.7) protein_coding-promoter-TSS (ENSMUSG00000010307.7) -376 ENSMUSG00000109634.1 ENSMUSG00000109634 ENSMUST00000209471 Gm45474 lincRNA Interval_105003 chr3 79633966 79634413 + 0 NA Intergenic Intergenic -4689 ENSMUSG00000027809.14 ENSMUSG00000027809 ENSMUST00000126809 Etfdh protein_coding Interval_156405 chr8 47950995 47952550 + 0 NA intron (ENSMUSG00000031563.8, intron 1 of 22) protein_coding-intron (ENSMUSG00000031563.8, intron 1 of 22) 39152 ENSMUSG00000031563.8 ENSMUSG00000031563 ENSMUST00000212282 Wwc2 protein_coding Interval_21957 chr11 5422649 5423090 + 0 NA intron (ENSMUSG00000041961.14, intron 1 of 3) protein_coding-intron (ENSMUSG00000041961.14, intron 1 of 8) -41129 ENSMUSG00000041961.14 ENSMUSG00000041961 ENSMUST00000143746 Znrf3 protein_coding Interval_164949 chr9 43314640 43315664 + 0 NA intron (ENSMUSG00000032013.6, intron 1 of 8) protein_coding-intron (ENSMUSG00000032013.6, intron 1 of 8) -3807 ENSMUSG00000032013.6 ENSMUSG00000032013 ENSMUST00000217067 Trim29 protein_coding Interval_32226 chr11 106313433 106314350 + 0 NA intron (ENSMUSG00000040592.11, intron 1 of 5) protein_coding-intron (ENSMUSG00000040592.11, intron 1 of 5) 638 ENSMUSG00000040592.11 ENSMUSG00000040592 ENSMUST00000167143 Cd79b protein_coding Interval_144932 chr7 28981353 28984252 + 0 NA promoter-TSS (ENSMUSG00000053565.10) protein_coding-promoter-TSS (ENSMUSG00000053565.10) -7966 ENSMUSG00000053565.10 ENSMUSG00000053565 ENSMUST00000208707 Eif3k protein_coding Interval_57166 chr15 7109852 7110063 + 0 NA intron (ENSMUSG00000054263.12, intron 1 of 4) protein_coding-intron (ENSMUSG00000054263.12, intron 1 of 4) 19343 ENSMUSG00000054263.12 ENSMUSG00000054263 ENSMUST00000171588 Lifr protein_coding Interval_52346 chr14 45309714 45310464 + 0 NA intron (ENSMUSG00000021831.9, intron 1 of 4) protein_coding-intron (ENSMUSG00000021831.9, intron 1 of 15) -8350 ENSMUSG00000021831.9 ENSMUSG00000021831 ENSMUST00000228777 Ero1l protein_coding Interval_137377 chr6 71799010 71799695 + 0 NA intron (ENSMUSG00000052852.8, intron 7 of 8) protein_coding-intron (ENSMUSG00000052852.8, intron 6 of 6) -3536 ENSMUSG00000108594.1 ENSMUSG00000108594 ENSMUST00000205395 Gm44770 TEC Interval_134280 chr6 24456266 24456570 + 0 NA intron (ENSMUSG00000046192.4, intron 9 of 12) protein_coding-intron (ENSMUSG00000046192.4, intron 9 of 12) 58649 ENSMUSG00000046192.4 ENSMUSG00000046192 ENSMUST00000052277 Iqub protein_coding Interval_70280 chr17 8156293 8156552 + 0 NA Intergenic Intergenic -8634 ENSMUSG00000116988.1 ENSMUSG00000116988 ENSMUST00000232307 Gm49673 protein_coding Interval_129355 chr5 119421091 119421309 + 0 NA Intergenic Intergenic 106754 ENSMUSG00000106938.1 ENSMUSG00000106938 ENSMUST00000201435 Gm31314 lincRNA Interval_11911 chr1 187015826 187016563 + 0 NA Intergenic Intergenic -9590 ENSMUSG00000104424.1 ENSMUSG00000104424 ENSMUST00000192135 Gm19058 processed_pseudogene Interval_32443 chr11 107560361 107561734 + 0 NA intron (ENSMUSG00000020721.16, intron 3 of 4) protein_coding-intron (ENSMUSG00000020721.16, intron 2 of 31) -12674 ENSMUSG00000059706.4 ENSMUSG00000059706 ENSMUST00000147445 A830035A12Rik processed_transcript Interval_20795 chr10 121002129 121002340 + 0 NA Intergenic Intergenic -1173 ENSMUSG00000112192.1 ENSMUSG00000112192 ENSMUST00000219168 Gm48341 lincRNA Interval_97478 chr2 137095818 137096572 + 0 NA exon (ENSMUSG00000027276.7, exon 6 of 26) protein_coding-exon (ENSMUSG00000027276.7, exon 6 of 26) -10246 ENSMUSG00000027276.7 ENSMUSG00000027276 ENSMUST00000133640 Jag1 protein_coding Interval_64964 chr16 17558143 17559385 + 0 NA intron (ENSMUSG00000022759.15, intron 3 of 7) protein_coding-intron (ENSMUSG00000022759.15, intron 3 of 7) 2480 ENSMUSG00000022759.15 ENSMUSG00000022759 ENSMUST00000232637 Lrrc74b protein_coding Interval_128335 chr5 112602064 112602627 + 0 NA Intergenic Intergenic -12349 ENSMUSG00000097962.7 ENSMUSG00000097962 ENSMUST00000182949 1700034G24Rik lincRNA Interval_78044 chr18 7415986 7417201 + 0 NA intron (ENSMUSG00000057440.8, intron 11 of 12) protein_coding-intron (ENSMUSG00000057440.8, intron 11 of 16) -132394 ENSMUSG00000117556.1 ENSMUSG00000117556 ENSMUST00000234527 Gm18948 processed_pseudogene Interval_128646 chr5 114484528 114486335 + 0 NA Intergenic Intergenic 33011 ENSMUSG00000041939.14 ENSMUSG00000041939 ENSMUST00000139420 Mvk protein_coding Interval_14786 chr10 39877792 39878189 + 0 NA Intergenic Intergenic 21179 ENSMUSG00000096687.8 ENSMUSG00000096687 ENSMUST00000239084 Mfsd4b4 protein_coding Interval_66331 chr16 33195872 33196449 + 0 NA intron (ENSMUSG00000022807.9, intron 2 of 12) protein_coding-intron (ENSMUSG00000022807.9, intron 2 of 12) 11089 ENSMUSG00000022807.9 ENSMUSG00000022807 ENSMUST00000231617 Osbpl11 protein_coding Interval_67635 chr16 54911042 54911291 + 0 NA Intergenic Intergenic -61265 ENSMUSG00000064549.1 ENSMUSG00000064549 ENSMUST00000082615 Gm22977 snRNA Interval_64500 chr16 12779161 12779389 + 0 NA intron (ENSMUSG00000116520.1, intron 2 of 11) lincRNA-intron (ENSMUSG00000116520.1, intron 2 of 11) -17909 ENSMUSG00000091416.2 ENSMUSG00000091416 ENSMUST00000171185 Gm6327 processed_pseudogene Interval_143321 chr7 5285311 5285863 + 0 NA Intergenic Intergenic -8137 ENSMUSG00000075906.1 ENSMUSG00000075906 ENSMUST00000101956 Gm23942 snRNA Interval_143966 chr7 18675121 18675330 + 0 NA intron (ENSMUSG00000063305.10, intron 4 of 4) protein_coding-intron (ENSMUSG00000063305.10, intron 5 of 5) -7262 ENSMUSG00000109180.1 ENSMUSG00000109180 ENSMUST00000208052 Gm44654 unprocessed_pseudogene Interval_25168 chr11 44696194 44697375 + 0 NA intron (ENSMUSG00000057098.14, intron 6 of 15) protein_coding-intron (ENSMUSG00000057098.14, intron 6 of 15) -34108 ENSMUSG00000085784.1 ENSMUSG00000085784 ENSMUST00000130493 Gm12158 antisense Interval_5344 chr1 87755677 87756621 + 0 NA promoter-TSS (ENSMUSG00000026289.15) protein_coding-promoter-TSS (ENSMUSG00000026289.15) 61 ENSMUSG00000026289.15 ENSMUSG00000026289 ENSMUST00000127884 Atg16l1 protein_coding Interval_94123 chr2 84518824 84521445 + 0 NA intron (ENSMUSG00000087362.7, intron 1 of 2) lincRNA-intron (ENSMUSG00000087362.7, intron 1 of 2) 11188 ENSMUSG00000087362.7 ENSMUSG00000087362 ENSMUST00000139492 Gm13710 lincRNA Interval_7925 chr1 134609222 134609443 + 0 NA intron (ENSMUSG00000042207.17, intron 14 of 25) protein_coding-intron (ENSMUSG00000042207.17, intron 14 of 26) -13468 ENSMUSG00000042207.17 ENSMUSG00000042207 ENSMUST00000191572 Kdm5b protein_coding Interval_6450 chr1 109386068 109386289 + 0 NA Intergenic Intergenic 188951 ENSMUSG00000100884.1 ENSMUSG00000100884 ENSMUST00000185658 Gm28281 processed_pseudogene Interval_110708 chr4 6684393 6684610 + 0 NA Intergenic Intergenic -3668 ENSMUSG00000086052.1 ENSMUSG00000086052 ENSMUST00000137749 Gm11802 antisense Interval_58667 chr15 36903386 36903604 + 0 NA Intergenic Intergenic -23679 ENSMUSG00000072618.2 ENSMUSG00000072618 ENSMUST00000100713 Gm10384 lincRNA Interval_114814 chr4 85584235 85584486 + 0 NA intron (ENSMUSG00000066113.16, intron 1 of 3) protein_coding-intron (ENSMUSG00000028488.15, intron 7 of 7) 70188 ENSMUSG00000066113.16 ENSMUSG00000066113 ENSMUST00000107177 Adamtsl1 protein_coding Interval_35284 chr12 19725303 19725987 + 0 NA Intergenic Intergenic 3498 ENSMUSG00000114002.1 ENSMUSG00000114002 ENSMUST00000221803 Gm48637 processed_pseudogene Interval_43880 chr13 37825064 37827946 + 0 NA promoter-TSS (ENSMUSG00000039087.17) protein_coding-promoter-TSS (ENSMUSG00000039087.17) -26715 ENSMUSG00000114370.1 ENSMUSG00000114370 ENSMUST00000224624 Gm46411 antisense Interval_28687 chr11 77757008 77757263 + 0 NA Intergenic Intergenic 10094 ENSMUSG00000081924.1 ENSMUSG00000081924 ENSMUST00000117231 Gm11191 processed_pseudogene Interval_146965 chr7 56347683 56347936 + 0 NA intron (ENSMUSG00000030450.11, intron 17 of 22) protein_coding-intron (ENSMUSG00000030450.11, intron 18 of 23) -104659 ENSMUSG00000108773.1 ENSMUSG00000108773 ENSMUST00000206278 Gm44506 antisense Interval_153120 chr7 141464561 141465091 + 0 NA promoter-TSS (ENSMUSG00000048200.12) protein_coding-promoter-TSS (ENSMUSG00000048200.12) 205 ENSMUSG00000073787.4 ENSMUSG00000073787 ENSMUST00000211564 Gm10575 processed_transcript Interval_173778 chrX 103991657 103991972 + 0 NA Intergenic Intergenic 9523 ENSMUSG00000080825.1 ENSMUSG00000080825 ENSMUST00000117636 Gm14892 processed_pseudogene Interval_31564 chr11 101398811 101399550 + 0 NA Intergenic Intergenic -1412 ENSMUSG00000064759.1 ENSMUSG00000064759 ENSMUST00000082825 Gm25475 snRNA Interval_54497 chr14 70259237 70259479 + 0 NA intron (ENSMUSG00000022092.11, intron 3 of 14) protein_coding-intron (ENSMUSG00000022092.11, intron 3 of 13) -21789 ENSMUSG00000115645.1 ENSMUSG00000115645 ENSMUST00000227159 Gm49288 processed_pseudogene Interval_169778 chr9 101191594 101191841 + 0 NA promoter-TSS (ENSMUSG00000104094.1) TEC-promoter-TSS (ENSMUSG00000104094.1) -435 ENSMUSG00000104094.1 ENSMUSG00000104094 ENSMUST00000193545 Gm37314 TEC Interval_39072 chr12 84861933 84862379 + 0 NA intron (ENSMUSG00000002020.15, intron 2 of 11) protein_coding-intron (ENSMUSG00000002020.15, intron 2 of 35) -13613 ENSMUSG00000092130.2 ENSMUSG00000092130 ENSMUST00000220643 D030025P21Rik antisense Interval_6795 chr1 119519285 119519973 + 0 NA TTS (ENSMUSG00000098447.2) antisense-TTS (ENSMUSG00000098447.2) -6531 ENSMUSG00000098923.1 ENSMUSG00000098923 ENSMUST00000183607 Tmem185b protein_coding Interval_134088 chr6 19209248 19209487 + 0 NA Intergenic Intergenic 69476 ENSMUSG00000107217.1 ENSMUSG00000107217 ENSMUST00000200755 4930524B17Rik lincRNA Interval_166553 chr9 60851133 60851683 + 0 NA intron (ENSMUSG00000034485.10, intron 7 of 19) protein_coding-intron (ENSMUSG00000034485.10, intron 7 of 18) -13209 ENSMUSG00000052143.8 ENSMUSG00000052143 ENSMUST00000063858 Gm9869 antisense Interval_126168 chr5 81204813 81205618 + 0 NA intron (ENSMUSG00000037605.16, intron 3 of 10) protein_coding-intron (ENSMUSG00000037605.16, intron 3 of 26) -44034 ENSMUSG00000107226.1 ENSMUSG00000107226 ENSMUST00000201153 Gm43594 TEC Interval_72261 chr17 28865523 28866012 + 0 NA intron (ENSMUSG00000043286.12, intron 1 of 6) protein_coding-intron (ENSMUSG00000043286.12, intron 1 of 9) -6259 ENSMUSG00000087615.2 ENSMUSG00000087615 ENSMUST00000146779 Pnpla1os antisense Interval_163433 chr9 21417303 21418616 + 0 NA promoter-TSS (ENSMUSG00000002825.8) protein_coding-promoter-TSS (ENSMUSG00000002825.8) 6093 ENSMUSG00000002825.8 ENSMUSG00000002825 ENSMUST00000217060 Qtrt1 protein_coding Interval_107745 chr3 112839944 112840798 + 0 NA Intergenic Intergenic -73359 ENSMUSG00000106666.1 ENSMUSG00000106666 ENSMUST00000199590 Gm43587 processed_pseudogene Interval_127845 chr5 108189188 108189918 + 0 NA intron (ENSMUSG00000056531.11, intron 17 of 28) protein_coding-intron (ENSMUSG00000056531.11, intron 17 of 28) 21881 ENSMUSG00000105591.1 ENSMUSG00000105591 ENSMUST00000199594 Gm43083 processed_pseudogene Interval_35364 chr12 21046583 21046907 + 0 NA intron (ENSMUSG00000052632.16, intron 3 of 9) transcribed_unprocessed_pseudogene-intron (ENSMUSG00000092229.3, intron 2 of 2) 3786 ENSMUSG00000092229.3 ENSMUSG00000092229 ENSMUST00000174304 Gm5977 transcribed_unprocessed_pseudogene Interval_7422 chr1 131199760 131200970 + 0 NA promoter-TSS (ENSMUSG00000026430.16) protein_coding-promoter-TSS (ENSMUSG00000026430.16) -16512 ENSMUSG00000101729.1 ENSMUSG00000101729 ENSMUST00000189015 Gm17796 processed_pseudogene Interval_3551 chr1 59523221 59524400 + 0 NA promoter-TSS (ENSMUSG00000047361.16) protein_coding-promoter-TSS (ENSMUSG00000047361.16) 13419 ENSMUSG00000101409.1 ENSMUSG00000101409 ENSMUST00000186973 1700122D07Rik antisense Interval_104956 chr3 79261410 79262286 + 0 NA intron (ENSMUSG00000062232.14, intron 1 of 29) protein_coding-intron (ENSMUSG00000062232.14, intron 1 of 29) 24669 ENSMUSG00000062232.14 ENSMUSG00000062232 ENSMUST00000136126 Rapgef2 protein_coding Interval_5913 chr1 93190575 93191565 + 0 NA exon (ENSMUSG00000084989.3, exon 11 of 32) protein_coding-exon (ENSMUSG00000084989.3, exon 11 of 32) 22345 ENSMUSG00000084989.3 ENSMUSG00000084989 ENSMUST00000138595 Crocc2 protein_coding Interval_3339 chr1 57155547 57155994 + 0 NA Intergenic Intergenic 28430 ENSMUSG00000099945.1 ENSMUSG00000099945 ENSMUST00000185283 1700126A01Rik lincRNA Interval_49080 chr13 107799105 107799971 + 0 NA intron (ENSMUSG00000032846.10, intron 1 of 12) protein_coding-intron (ENSMUSG00000032846.10, intron 2 of 14) 29742 ENSMUSG00000093334.2 ENSMUSG00000093334 ENSMUST00000175593 Gm22118 miRNA Interval_71554 chr17 24529264 24530776 + 0 NA promoter-TSS (ENSMUSG00000079657.10) protein_coding-promoter-TSS (ENSMUSG00000079657.10) 1544 ENSMUSG00000064768.1 ENSMUSG00000064768 ENSMUST00000082834 Snord60 snoRNA Interval_60474 chr15 74152987 74153849 + 0 NA Intergenic Intergenic -59085 ENSMUSG00000082585.3 ENSMUSG00000082585 ENSMUST00000120421 Gm15387 processed_pseudogene Interval_157108 chr8 65282474 65282724 + 0 NA Intergenic Intergenic -3412 ENSMUSG00000110226.1 ENSMUSG00000110226 ENSMUST00000209702 Gm7624 processed_pseudogene Interval_90299 chr2 29652092 29653135 + 0 NA intron (ENSMUSG00000039844.20, intron 1 of 23) protein_coding-intron (ENSMUSG00000039844.20, intron 1 of 25) 8798 ENSMUSG00000039844.20 ENSMUSG00000039844 ENSMUST00000123953 Rapgef1 protein_coding Interval_174656 chrX 162642901 162643996 + 0 NA exon (ENSMUSG00000040855.15, exon 1 of 18) protein_coding-exon (ENSMUSG00000040855.15, exon 1 of 18) -35559 ENSMUSG00000083963.1 ENSMUSG00000083963 ENSMUST00000117668 Gm15203 processed_pseudogene Interval_35599 chr12 25180991 25181337 + 0 NA promoter-TSS (ENSMUSG00000114033.1) lincRNA-promoter-TSS (ENSMUSG00000114033.1) -604 ENSMUSG00000114033.1 ENSMUSG00000114033 ENSMUST00000222804 Gm47705 lincRNA Interval_48941 chr13 105249475 105250900 + 0 NA exon (ENSMUSG00000021720.11, exon 3 of 7) protein_coding-exon (ENSMUSG00000021720.11, exon 3 of 7) -26789 ENSMUSG00000077578.1 ENSMUSG00000077578 ENSMUST00000104390 Gm25631 snoRNA Interval_34875 chr12 12889408 12890580 + 0 NA Intergenic Intergenic -14556 ENSMUSG00000097627.2 ENSMUSG00000097627 ENSMUST00000221053 4930519A11Rik lincRNA Interval_120011 chr4 141360968 141361866 + 0 NA Intergenic Intergenic -4326 ENSMUSG00000084238.1 ENSMUSG00000084238 ENSMUST00000118041 Gm13076 processed_pseudogene Interval_94523 chr2 91921146 91924267 + 0 NA Intergenic Intergenic -1778 ENSMUSG00000075036.1 ENSMUSG00000075036 ENSMUST00000099710 Gm10805 pseudogene Interval_32140 chr11 105510164 105510947 + 0 NA Intergenic Intergenic 76110 ENSMUSG00000086089.1 ENSMUSG00000086089 ENSMUST00000155987 Gm11640 antisense Interval_62455 chr15 93135133 93135335 + 0 NA TTS (ENSMUSG00000116124.1) processed_transcript-TTS (ENSMUSG00000116124.1) 2308 ENSMUSG00000116124.1 ENSMUSG00000116124 ENSMUST00000230014 Gm49420 processed_transcript Interval_118305 chr4 130174186 130175995 + 0 NA promoter-TSS (ENSMUSG00000028776.14) protein_coding-promoter-TSS (ENSMUSG00000028776.14) -298 ENSMUSG00000028776.14 ENSMUSG00000028776 ENSMUST00000133660 Tinagl1 protein_coding Interval_61675 chr15 83331733 83333055 + 0 NA intron (ENSMUSG00000054277.8, intron 1 of 1) protein_coding-intron (ENSMUSG00000054277.8, intron 5 of 15) 873 ENSMUSG00000054277.8 ENSMUSG00000054277 ENSMUST00000227511 Arfgap3 protein_coding Interval_139157 chr6 96457431 96458321 + 0 NA intron (ENSMUSG00000059187.12, intron 2 of 4) protein_coding-intron (ENSMUSG00000059187.12, intron 1 of 3) 11655 ENSMUSG00000065239.1 ENSMUSG00000065239 ENSMUST00000083305 Gm22971 snRNA Interval_138617 chr6 90475018 90476001 + 0 NA TTS (ENSMUSG00000030087.11) protein_coding-TTS (ENSMUSG00000030087.11) -2957 ENSMUSG00000107451.1 ENSMUSG00000107451 ENSMUST00000205064 Gm44421 lincRNA Interval_133847 chr6 13283724 13283924 + 0 NA Intergenic Intergenic 20079 ENSMUSG00000118525.1 ENSMUSG00000118525 ENSMUST00000238854 AC121573.1 processed_pseudogene Interval_78262 chr18 10948623 10949120 + 0 NA Intergenic Intergenic 19987 ENSMUSG00000117563.1 ENSMUSG00000117563 ENSMUST00000235119 Gm7575 processed_pseudogene Interval_157785 chr8 73161885 73162260 + 0 NA intron (ENSMUSG00000004383.18, intron 3 of 15) protein_coding-intron (ENSMUSG00000004383.18, intron 2 of 14) 13186 ENSMUSG00000089447.1 ENSMUSG00000089447 ENSMUST00000158822 Gm22532 snoRNA Interval_54851 chr14 75822630 75823501 + 0 NA Intergenic Intergenic -18421 ENSMUSG00000115458.1 ENSMUSG00000115458 ENSMUST00000228454 Gm48931 processed_pseudogene Interval_72083 chr17 27921057 27921468 + 0 NA intron (ENSMUSG00000024219.16, intron 1 of 23) protein_coding-intron (ENSMUSG00000024219.16, intron 1 of 24) -12123 ENSMUSG00000024218.13 ENSMUSG00000024218 ENSMUST00000233681 Taf11 protein_coding Interval_100143 chr2 167306115 167306408 + 0 NA promoter-TSS (ENSMUSG00000017929.13) protein_coding-promoter-TSS (ENSMUSG00000017929.13) 7594 ENSMUSG00000017929.13 ENSMUSG00000017929 ENSMUST00000133557 B4galt5 protein_coding Interval_104557 chr3 68055193 68055404 + 0 NA exon (ENSMUSG00000051777.6, exon 4 of 4) protein_coding-exon (ENSMUSG00000051777.6, exon 4 of 4) 163066 ENSMUSG00000102422.1 ENSMUSG00000102422 ENSMUST00000182006 Iqschfp protein_coding Interval_30517 chr11 94881988 94883497 + 0 NA Intergenic Intergenic -20983 ENSMUSG00000043522.8 ENSMUSG00000043522 ENSMUST00000124176 A430060F13Rik unprocessed_pseudogene Interval_49609 chr13 113515053 113515669 + 0 NA Intergenic Intergenic -12517 ENSMUSG00000114790.1 ENSMUSG00000114790 ENSMUST00000223835 4921509O07Rik lincRNA Interval_128857 chr5 115631409 115632909 + 0 NA promoter-TSS (ENSMUSG00000029518.15) protein_coding-promoter-TSS (ENSMUSG00000029518.15) 18 ENSMUSG00000029518.15 ENSMUSG00000029518 ENSMUST00000138885 Rab35 protein_coding Interval_60200 chr15 67696632 67696923 + 0 NA Intergenic Intergenic -177051 ENSMUSG00000115875.1 ENSMUSG00000115875 ENSMUST00000230402 Gm49408 processed_pseudogene Interval_119917 chr4 140910701 140911114 + 0 NA intron (ENSMUSG00000028927.6, intron 1 of 15) protein_coding-intron (ENSMUSG00000028927.6, intron 1 of 15) -7777 ENSMUSG00000064443.1 ENSMUSG00000064443 ENSMUST00000082509 Gm26226 snRNA Interval_50929 chr14 20806078 20806298 + 0 NA Intergenic Intergenic 11949 ENSMUSG00000114241.1 ENSMUSG00000114241 ENSMUST00000224276 Gm30108 lincRNA Interval_124289 chr5 43635938 43636350 + 0 NA Intergenic Intergenic -34413 ENSMUSG00000087290.2 ENSMUSG00000087290 ENSMUST00000152116 Gm15866 antisense Interval_15769 chr10 56373966 56374695 + 0 NA Intergenic Intergenic -3119 ENSMUSG00000050953.10 ENSMUSG00000050953 ENSMUST00000220069 Gja1 protein_coding Interval_173208 chrX 74232840 74233527 + 0 NA exon (ENSMUSG00000031328.16, exon 28 of 47) protein_coding-exon (ENSMUSG00000031328.16, exon 28 of 47) 8120 ENSMUSG00000031328.16 ENSMUSG00000031328 ENSMUST00000239316 Flna protein_coding Interval_167995 chr9 75319543 75320179 + 0 NA intron (ENSMUSG00000110824.1, intron 2 of 2) protein_coding-intron (ENSMUSG00000032192.9, intron 2 of 11) -4990 ENSMUSG00000111348.1 ENSMUSG00000111348 ENSMUST00000216737 Gm19531 antisense Interval_43589 chr13 33920560 33922956 + 0 NA intron (ENSMUSG00000060147.15, intron 6 of 6) protein_coding-intron (ENSMUSG00000060147.15, intron 6 of 7) 14220 ENSMUSG00000060147.15 ENSMUSG00000060147 ENSMUST00000170620 Serpinb6a protein_coding Interval_54008 chr14 64373077 64373974 + 0 NA intron (ENSMUSG00000054733.9, intron 1 of 2) protein_coding-intron (ENSMUSG00000054733.9, intron 6 of 10) 43423 ENSMUSG00000054733.9 ENSMUSG00000054733 ENSMUST00000209513 Msra protein_coding Interval_16982 chr10 70279052 70279533 + 0 NA intron (ENSMUSG00000037762.6, intron 2 of 3) protein_coding-intron (ENSMUSG00000037762.6, intron 4 of 5) 5661 ENSMUSG00000089835.1 ENSMUSG00000089835 ENSMUST00000161841 Gm7097 antisense Interval_135999 chr6 49346267 49346612 + 0 NA Intergenic Intergenic 27132 ENSMUSG00000050786.8 ENSMUSG00000050786 ENSMUST00000114491 Ccdc126 protein_coding Interval_50259 chr14 11502806 11504255 + 0 NA TTS (ENSMUSG00000114786.1) lincRNA-TTS (ENSMUSG00000114786.1) -11872 ENSMUSG00000114850.1 ENSMUSG00000114850 ENSMUST00000224598 Gm8438 processed_pseudogene Interval_95578 chr2 112449589 112449787 + 0 NA Intergenic Intergenic -5309 ENSMUSG00000055943.5 ENSMUSG00000055943 ENSMUST00000069747 Emc7 protein_coding Interval_152533 chr7 133946824 133947899 + 0 NA intron (ENSMUSG00000054555.11, intron 1 of 12) protein_coding-intron (ENSMUSG00000054555.11, intron 11 of 22) -7620 ENSMUSG00000093032.1 ENSMUSG00000093032 ENSMUST00000175291 Gm23631 miRNA Interval_92956 chr2 68958080 68959016 + 0 NA intron (ENSMUSG00000027035.10, intron 3 of 10) protein_coding-intron (ENSMUSG00000027035.10, intron 3 of 9) -3669 ENSMUSG00000103734.1 ENSMUSG00000103734 ENSMUST00000194679 Gm37651 TEC Interval_129757 chr5 122147996 122149597 + 0 NA Intergenic Intergenic -9797 ENSMUSG00000004455.16 ENSMUSG00000004455 ENSMUST00000134719 Ppp1cc protein_coding Interval_99562 chr2 163248729 163249042 + 0 NA intron (ENSMUSG00000074607.11, intron 2 of 8) protein_coding-intron (ENSMUSG00000074607.11, intron 2 of 8) 23431 ENSMUSG00000074607.11 ENSMUSG00000074607 ENSMUST00000148599 Tox2 protein_coding Interval_137051 chr6 66962412 66963030 + 0 NA intron (ENSMUSG00000036402.13, intron 3 of 4) protein_coding-intron (ENSMUSG00000036402.13, intron 3 of 4) 45692 ENSMUSG00000107634.1 ENSMUSG00000107634 ENSMUST00000204824 Gm36816 antisense Interval_157458 chr8 70500644 70501269 + 0 NA promoter-TSS (ENSMUSG00000007888.15) protein_coding-promoter-TSS (ENSMUSG00000007888.15) 5156 ENSMUSG00000058833.11 ENSMUSG00000058833 ENSMUST00000128620 Rex1bd protein_coding Interval_161921 chr8 123773652 123774779 + 0 NA intron (ENSMUSG00000092329.1, intron 1 of 15) protein_coding-intron (ENSMUSG00000092329.1, intron 1 of 15) 6664 ENSMUSG00000110456.1 ENSMUSG00000110456 ENSMUST00000211815 Gm45865 TEC Interval_132341 chr5 144314979 144315383 + 0 NA intron (ENSMUSG00000047843.16, intron 3 of 3) protein_coding-intron (ENSMUSG00000038859.7, intron 3 of 13) -26274 ENSMUSG00000038859.7 ENSMUSG00000038859 ENSMUST00000129287 Baiap2l1 protein_coding Interval_97663 chr2 142393369 142394099 + 0 NA TTS (ENSMUSG00000068205.14) protein_coding-TTS (ENSMUSG00000068205.14) 11746 ENSMUSG00000089318.1 ENSMUSG00000089318 ENSMUST00000158693 Gm23179 misc_RNA Interval_108285 chr3 123313965 123314439 + 0 NA intron (ENSMUSG00000039234.11, intron 5 of 19) protein_coding-intron (ENSMUSG00000039234.11, intron 8 of 22) 46712 ENSMUSG00000039234.11 ENSMUSG00000039234 ENSMUST00000196482 Sec24d protein_coding Interval_45102 chr13 52198991 52199179 + 0 NA Intergenic Intergenic 18674 ENSMUSG00000113399.1 ENSMUSG00000113399 ENSMUST00000222876 Gm48199 lincRNA Interval_124985 chr5 63334478 63334668 + 0 NA Intergenic Intergenic 316321 ENSMUSG00000104868.1 ENSMUSG00000104868 ENSMUST00000067917 Gm9954 TEC Interval_62286 chr15 89459915 89460821 + 0 NA intron (ENSMUSG00000022619.5, intron 8 of 11) protein_coding-intron (ENSMUSG00000022619.5, intron 8 of 11) 5326 ENSMUSG00000022619.5 ENSMUSG00000022619 ENSMUST00000137755 Mapk8ip2 protein_coding Interval_129241 chr5 118396132 118396377 + 0 NA TTS (ENSMUSG00000106812.1) lincRNA-TTS (ENSMUSG00000106812.1) 1076 ENSMUSG00000106812.1 ENSMUSG00000106812 ENSMUST00000201179 Gm28563 lincRNA Interval_125967 chr5 76330779 76331757 + 0 NA promoter-TSS (ENSMUSG00000029235.14) protein_coding-promoter-TSS (ENSMUSG00000029235.14) 30 ENSMUSG00000087037.1 ENSMUSG00000087037 ENSMUST00000132154 4930432L08Rik processed_transcript Interval_99583 chr2 163356392 163356607 + 0 NA intron (ENSMUSG00000017817.11, intron 3 of 6) protein_coding-intron (ENSMUSG00000017817.11, intron 2 of 5) 41494 ENSMUSG00000017817.11 ENSMUSG00000017817 ENSMUST00000109425 Jph2 protein_coding Interval_49131 chr13 108328145 108330142 + 0 NA intron (ENSMUSG00000021697.12, intron 1 of 4) protein_coding-intron (ENSMUSG00000021697.12, intron 2 of 10) -12870 ENSMUSG00000090358.1 ENSMUSG00000090358 ENSMUST00000164299 Gm2822 processed_transcript Interval_56118 chr14 105988788 105989056 + 0 NA Intergenic Intergenic -92103 ENSMUSG00000022114.5 ENSMUSG00000022114 ENSMUST00000022709 Spry2 protein_coding Interval_32753 chr11 110357882 110358319 + 0 NA Intergenic Intergenic -20384 ENSMUSG00000018800.14 ENSMUSG00000018800 ENSMUST00000148984 Abca5 protein_coding Interval_81567 chr18 61738670 61739288 + 0 NA intron (ENSMUSG00000033032.15, intron 10 of 15) protein_coding-intron (ENSMUSG00000033032.15, intron 13 of 18) 12546 ENSMUSG00000098702.1 ENSMUSG00000098702 ENSMUST00000184530 1500015A07Rik antisense Interval_163252 chr9 19704499 19705417 + 0 NA Intergenic Intergenic -4475 ENSMUSG00000094678.5 ENSMUSG00000094678 ENSMUST00000077023 Olfr857 protein_coding Interval_36417 chr12 44209345 44210861 + 0 NA promoter-TSS (ENSMUSG00000093618.1) miRNA-promoter-TSS (ENSMUSG00000093618.1) -35 ENSMUSG00000014905.4 ENSMUSG00000014905 ENSMUST00000220421 Dnajb9 protein_coding Interval_161897 chr8 123527449 123528706 + 0 NA exon (ENSMUSG00000040220.10, exon 7 of 11) protein_coding-exon (ENSMUSG00000040220.10, exon 7 of 11) 4817 ENSMUSG00000088632.1 ENSMUSG00000088632 ENSMUST00000158007 Gm22314 misc_RNA Interval_106562 chr3 97261980 97262666 + 0 NA promoter-TSS (ENSMUSG00000106536.1) TEC-promoter-TSS (ENSMUSG00000106536.1) -32 ENSMUSG00000106536.1 ENSMUSG00000106536 ENSMUST00000199972 Gm42508 TEC Interval_45912 chr13 59145649 59146116 + 0 NA promoter-TSS (ENSMUSG00000114208.1) lincRNA-promoter-TSS (ENSMUSG00000114208.1) -54 ENSMUSG00000114208.1 ENSMUSG00000114208 ENSMUST00000224127 Gm34307 lincRNA Interval_8623 chr1 144197822 144198455 + 0 NA Intergenic Intergenic -20863 ENSMUSG00000051079.8 ENSMUSG00000051079 ENSMUST00000111941 Rgs13 protein_coding Interval_37615 chr12 70346146 70348038 + 0 NA promoter-TSS (ENSMUSG00000021071.17) protein_coding-promoter-TSS (ENSMUSG00000021071.17) -370 ENSMUSG00000112945.1 ENSMUSG00000112945 ENSMUST00000223521 Gm32151 bidirectional_promoter_lncRNA Interval_132695 chr5 147211279 147211903 + 0 NA Intergenic Intergenic -11338 ENSMUSG00000077735.1 ENSMUSG00000077735 ENSMUST00000104547 Gm24556 snoRNA Interval_162047 chr8 124707438 124707785 + 0 NA TTS (ENSMUSG00000037300.19) protein_coding-TTS (ENSMUSG00000037300.19) 14357 ENSMUSG00000037300.19 ENSMUSG00000037300 ENSMUST00000127167 Ttc13 protein_coding Interval_3899 chr1 64616738 64618067 + 0 NA promoter-TSS (ENSMUSG00000025956.10) protein_coding-promoter-TSS (ENSMUSG00000025956.10) -382 ENSMUSG00000101832.1 ENSMUSG00000101832 ENSMUST00000186895 Gm28982 lincRNA Interval_75365 chr17 66145999 66146596 + 0 NA intron (ENSMUSG00000035842.10, intron 2 of 4) protein_coding-intron (ENSMUSG00000035842.10, intron 18 of 26) 2588 ENSMUSG00000035842.10 ENSMUSG00000035842 ENSMUST00000226095 Ddx11 protein_coding Interval_86877 chr19 44572255 44573329 + 0 NA exon (ENSMUSG00000036450.4, exon 8 of 8) protein_coding-exon (ENSMUSG00000036450.4, exon 8 of 8) 9942 ENSMUSG00000036450.4 ENSMUSG00000036450 ENSMUST00000040455 Hif1an protein_coding Interval_33266 chr11 115555365 115556097 + 0 NA Intergenic Intergenic -14384 ENSMUSG00000020739.11 ENSMUSG00000020739 ENSMUST00000134209 Nup85 protein_coding Interval_103146 chr3 35926056 35926867 + 0 NA intron (ENSMUSG00000027708.14, intron 1 of 5) protein_coding-intron (ENSMUSG00000027708.14, intron 1 of 6) 5873 ENSMUSG00000027708.14 ENSMUSG00000027708 ENSMUST00000196174 Dcun1d1 protein_coding Interval_65382 chr16 22038354 22038637 + 0 NA intron (ENSMUSG00000022855.9, intron 10 of 15) protein_coding-intron (ENSMUSG00000022855.9, intron 11 of 16) -15015 ENSMUSG00000068487.6 ENSMUSG00000068487 ENSMUST00000132879 Ndufa11b processed_pseudogene Interval_158724 chr8 85564512 85565738 + 0 NA Intergenic Intergenic -11659 ENSMUSG00000031701.6 ENSMUSG00000031701 ENSMUST00000211630 Dnaja2 protein_coding Interval_23959 chr11 28877097 28877330 + 0 NA intron (ENSMUSG00000020467.15, intron 4 of 10) protein_coding-intron (ENSMUSG00000020467.15, intron 4 of 10) -38454 ENSMUSG00000020467.15 ENSMUSG00000020467 ENSMUST00000139713 Efemp1 protein_coding Interval_77685 chr17 94269577 94270129 + 0 NA Intergenic Intergenic 59010 ENSMUSG00000077433.1 ENSMUSG00000077433 ENSMUST00000104245 Gm22593 snRNA Interval_62525 chr15 94338474 94338756 + 0 NA intron (ENSMUSG00000022449.14, intron 17 of 27) protein_coding-intron (ENSMUSG00000022449.14, intron 17 of 38) 65643 ENSMUSG00000022449.14 ENSMUSG00000022449 ENSMUST00000128797 Adamts20 protein_coding Interval_89249 chr2 18446884 18447257 + 0 NA Intergenic Intergenic -108081 ENSMUSG00000082520.2 ENSMUSG00000082520 ENSMUST00000118436 Gm13349 processed_pseudogene Interval_19977 chr10 111636127 111636839 + 0 NA Intergenic Intergenic 13329 ENSMUSG00000112357.1 ENSMUSG00000112357 ENSMUST00000217989 Gm47864 processed_pseudogene Interval_57227 chr15 7987754 7988003 + 0 NA intron (ENSMUSG00000039828.7, intron 9 of 17) protein_coding-intron (ENSMUSG00000039828.7, intron 9 of 17) 12550 ENSMUSG00000098281.1 ENSMUSG00000098281 ENSMUST00000184975 Gm27529 miRNA Interval_59982 chr15 62597650 62597867 + 0 NA intron (ENSMUSG00000115862.1, intron 1 of 3) lincRNA-intron (ENSMUSG00000115862.1, intron 1 of 3) 29783 ENSMUSG00000115862.1 ENSMUSG00000115862 ENSMUST00000230029 Gm41333 lincRNA Interval_152179 chr7 130465388 130465652 + 0 NA intron (ENSMUSG00000030850.17, intron 10 of 12) protein_coding-intron (ENSMUSG00000030850.17, intron 9 of 11) -7847 ENSMUSG00000108940.1 ENSMUSG00000108940 ENSMUST00000207954 Gm45719 TEC Interval_92628 chr2 61674457 61675235 + 0 NA Intergenic Intergenic 31015 ENSMUSG00000064289.15 ENSMUSG00000064289 ENSMUST00000154693 Tank protein_coding Interval_86058 chr19 36109465 36109778 + 0 NA Intergenic Intergenic 10289 ENSMUSG00000024803.9 ENSMUSG00000024803 ENSMUST00000235221 Ankrd1 protein_coding Interval_119036 chr4 135120178 135120604 + 0 NA promoter-TSS (ENSMUSG00000070691.10) protein_coding-promoter-TSS (ENSMUSG00000070691.10) 56 ENSMUSG00000086884.1 ENSMUSG00000086884 ENSMUST00000146152 Gm16225 lincRNA Interval_63788 chr15 103420547 103421268 + 0 NA intron (ENSMUSG00000022487.14, intron 4 of 8) protein_coding-intron (ENSMUSG00000022487.14, intron 4 of 8) 9442 ENSMUSG00000022487.14 ENSMUSG00000022487 ENSMUST00000129837 Gtsf1 protein_coding Interval_167616 chr9 71173699 71173939 + 0 NA intron (ENSMUSG00000111429.1, intron 2 of 5) antisense-intron (ENSMUSG00000111429.1, intron 1 of 2) 5043 ENSMUSG00000111429.1 ENSMUSG00000111429 ENSMUST00000217021 Gm32511 antisense Interval_137459 chr6 72565887 72566825 + 0 NA exon (ENSMUSG00000056698.11, exon 12 of 12) protein_coding-exon (ENSMUSG00000056698.11, exon 12 of 12) 16898 ENSMUSG00000056737.14 ENSMUSG00000056737 ENSMUST00000127770 Capg protein_coding Interval_132984 chr5 149096734 149096995 + 0 NA intron (ENSMUSG00000066551.12, intron 2 of 5) protein_coding-intron (ENSMUSG00000066551.12, intron 2 of 5) 26548 ENSMUSG00000097191.2 ENSMUSG00000097191 ENSMUST00000200718 Mm2pr lincRNA Interval_33134 chr11 114662202 114663264 + 0 NA Intergenic Intergenic -1875 ENSMUSG00000083769.1 ENSMUSG00000083769 ENSMUST00000120766 Gm11689 processed_pseudogene Interval_118967 chr4 134760599 134761365 + 0 NA intron (ENSMUSG00000037295.7, intron 1 of 8) protein_coding-intron (ENSMUSG00000037295.7, intron 1 of 8) -10875 ENSMUSG00000037295.7 ENSMUSG00000037295 ENSMUST00000140678 Ldlrap1 protein_coding Interval_5082 chr1 84838241 84841287 + 0 NA promoter-TSS (ENSMUSG00000026219.14) protein_coding-promoter-TSS (ENSMUSG00000026219.14) -15081 ENSMUSG00000104503.1 ENSMUSG00000104503 ENSMUST00000192396 Gm37738 TEC Interval_287 KZ289085.1 99676 100345 + 0 NA NA NA NA NA Interval_148233 chr7 80013740 80015984 + 0 NA Intergenic Intergenic -12952 ENSMUSG00000048897.15 ENSMUSG00000048897 ENSMUST00000206104 Zfp710 protein_coding Interval_174850 chrX 169857667 169858068 + 0 NA intron (ENSMUSG00000035299.16, intron 1 of 9) protein_coding-intron (ENSMUSG00000035299.16, intron 1 of 9) -69084 ENSMUSG00000035299.16 ENSMUSG00000035299 ENSMUST00000079443 Mid1 protein_coding Interval_126447 chr5 88621361 88621617 + 0 NA intron (ENSMUSG00000029291.11, intron 7 of 14) protein_coding-intron (ENSMUSG00000029291.11, intron 5 of 12) -25202 ENSMUSG00000029291.11 ENSMUSG00000029291 ENSMUST00000199956 Rufy3 protein_coding Interval_26522 chr11 58356274 58356931 + 0 NA Intergenic Intergenic -22441 ENSMUSG00000013643.13 ENSMUSG00000013643 ENSMUST00000108826 Lypd8 protein_coding Interval_96509 chr2 125163950 125164731 + 0 NA intron (ENSMUSG00000027202.12, intron 4 of 26) protein_coding-intron (ENSMUSG00000027202.12, intron 4 of 26) 11760 ENSMUSG00000027202.12 ENSMUSG00000027202 ENSMUST00000028630 Slc12a1 protein_coding Interval_71106 chr17 18210688 18211052 + 0 NA Intergenic Intergenic 58983 ENSMUSG00000091350.2 ENSMUSG00000091350 ENSMUST00000169686 Vmn2r92 protein_coding Interval_103092 chr3 35178854 35179483 + 0 NA Intergenic Intergenic 96963 ENSMUSG00000105651.1 ENSMUSG00000105651 ENSMUST00000198307 1700017M07Rik lincRNA Interval_147539 chr7 68172877 68173103 + 0 NA intron (ENSMUSG00000005533.10, intron 3 of 6) protein_coding-intron (ENSMUSG00000005533.10, intron 4 of 20) -38848 ENSMUSG00000005533.10 ENSMUSG00000005533 ENSMUST00000208871 Igf1r protein_coding Interval_123873 chr5 36179071 36179625 + 0 NA intron (ENSMUSG00000029093.14, intron 3 of 4) protein_coding-intron (ENSMUSG00000029093.14, intron 2 of 26) -24673 ENSMUSG00000043430.5 ENSMUSG00000043430 ENSMUST00000052224 Psapl1 protein_coding Interval_116863 chr4 117806470 117806720 + 0 NA Intergenic Intergenic 19061 ENSMUSG00000083507.1 ENSMUSG00000083507 ENSMUST00000117298 Gm12842 processed_pseudogene Interval_47227 chr13 78318372 78319045 + 0 NA Intergenic Intergenic -31624 ENSMUSG00000114383.1 ENSMUSG00000114383 ENSMUST00000224040 Gm3963 processed_pseudogene Interval_102294 chr3 20931832 20932689 + 0 NA Intergenic Intergenic 112639 ENSMUSG00000102807.1 ENSMUSG00000102807 ENSMUST00000194795 Gm37480 TEC Interval_135141 chr6 36672446 36674266 + 0 NA Intergenic Intergenic -26041 ENSMUSG00000080336.1 ENSMUSG00000080336 ENSMUST00000116686 Gm25111 miRNA Interval_157459 chr8 70503185 70503455 + 0 NA TTS (ENSMUSG00000058833.11) protein_coding-TTS (ENSMUSG00000058833.11) 2792 ENSMUSG00000058833.11 ENSMUSG00000058833 ENSMUST00000128620 Rex1bd protein_coding Interval_84487 chr19 11802098 11802308 + 0 NA TTS (ENSMUSG00000041488.16) protein_coding-TTS (ENSMUSG00000041488.16) 16690 ENSMUSG00000041488.16 ENSMUSG00000041488 ENSMUST00000209304 Stx3 protein_coding Interval_4897 chr1 81717252 81718812 + 0 NA Intergenic Intergenic 24937 ENSMUSG00000087008.4 ENSMUSG00000087008 ENSMUST00000117185 Gm5530 processed_pseudogene Interval_3307 chr1 56464795 56465188 + 0 NA Intergenic Intergenic 13584 ENSMUSG00000100944.1 ENSMUSG00000100944 ENSMUST00000185232 Gm28900 processed_pseudogene Interval_55565 chr14 92622853 92623693 + 0 NA Intergenic Intergenic -18876 ENSMUSG00000115662.1 ENSMUSG00000115662 ENSMUST00000227477 Gm7232 processed_pseudogene Interval_163255 chr9 20070319 20072175 + 0 NA Intergenic Intergenic -13685 ENSMUSG00000044454.5 ENSMUSG00000044454 ENSMUST00000060780 Olfr867 protein_coding Interval_12812 chr10 5787058 5787384 + 0 NA Intergenic Intergenic 17379 ENSMUSG00000019773.7 ENSMUSG00000019773 ENSMUST00000142200 Fbxo5 protein_coding Interval_170311 chr9 106854527 106855061 + 0 NA intron (ENSMUSG00000040325.16, intron 12 of 22) protein_coding-intron (ENSMUSG00000040325.16, intron 12 of 22) 3908 ENSMUSG00000040325.16 ENSMUSG00000040325 ENSMUST00000163657 Dcaf1 protein_coding Interval_54351 chr14 67868021 67868316 + 0 NA intron (ENSMUSG00000044447.5, intron 2 of 17) protein_coding-intron (ENSMUSG00000044447.5, intron 2 of 51) -8423 ENSMUSG00000098866.1 ENSMUSG00000098866 ENSMUST00000183732 Mir6539 miRNA Interval_139809 chr6 108921846 108922143 + 0 NA Intergenic Intergenic 39990 ENSMUSG00000107751.1 ENSMUSG00000107751 ENSMUST00000203838 Gm6749 processed_pseudogene Interval_145199 chr7 30602277 30603255 + 0 NA TTS (ENSMUSG00000006313.5) protein_coding-TTS (ENSMUSG00000006313.5) -3857 ENSMUSG00000006310.10 ENSMUSG00000006310 ENSMUST00000144532 Zbtb32 protein_coding Interval_31787 chr11 102853712 102854540 + 0 NA intron (ENSMUSG00000020929.14, intron 12 of 26) protein_coding-intron (ENSMUSG00000020929.14, intron 13 of 27) 11843 ENSMUSG00000020929.14 ENSMUSG00000020929 ENSMUST00000148209 Eftud2 protein_coding Interval_117558 chr4 124672456 124672781 + 0 NA Intergenic Intergenic -15449 ENSMUSG00000098760.1 ENSMUSG00000098760 ENSMUST00000184062 Gm2164 antisense Interval_90104 chr2 28099048 28099836 + 0 NA intron (ENSMUSG00000086425.7, intron 1 of 3) lincRNA-intron (ENSMUSG00000086425.7, intron 1 of 7) 3959 ENSMUSG00000086425.7 ENSMUSG00000086425 ENSMUST00000128888 F730016J06Rik lincRNA Interval_92642 chr2 61811332 61812662 + 0 NA TTS (ENSMUSG00000035033.15) protein_coding-TTS (ENSMUSG00000035033.15) 9067 ENSMUSG00000035033.15 ENSMUSG00000035033 ENSMUST00000131538 Tbr1 protein_coding Interval_114111 chr4 63508389 63508789 + 0 NA Intergenic Intergenic -36183 ENSMUSG00000039105.6 ENSMUSG00000039105 ENSMUST00000035301 Atp6v1g1 protein_coding Interval_54009 chr14 64395226 64395439 + 0 NA intron (ENSMUSG00000054733.9, intron 1 of 2) protein_coding-intron (ENSMUSG00000054733.9, intron 6 of 10) 21616 ENSMUSG00000054733.9 ENSMUSG00000054733 ENSMUST00000209513 Msra protein_coding Interval_19505 chr10 100732702 100732926 + 0 NA intron (ENSMUSG00000112104.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000112104.1, intron 1 of 2) 8821 ENSMUSG00000112104.1 ENSMUSG00000112104 ENSMUST00000218270 Gm35722 lincRNA Interval_130712 chr5 129947799 129948733 + 0 NA exon (ENSMUSG00000107118.1, exon 1 of 1) TEC-exon (ENSMUSG00000107118.1, exon 1 of 1) 2686 ENSMUSG00000107118.1 ENSMUSG00000107118 ENSMUST00000201618 Gm42986 TEC Interval_151351 chr7 121493444 121493647 + 0 NA intron (ENSMUSG00000108811.1, intron 2 of 5) protein_coding-intron (ENSMUSG00000046321.8, intron 1 of 1) 96291 ENSMUSG00000108811.1 ENSMUSG00000108811 ENSMUST00000206244 4933432K03Rik antisense Interval_50261 chr14 11519398 11519644 + 0 NA intron (ENSMUSG00000114849.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000114849.1, intron 1 of 2) 1249 ENSMUSG00000114849.1 ENSMUSG00000114849 ENSMUST00000224543 Gm48595 lincRNA Interval_62654 chr15 95978448 95978933 + 0 NA intron (ENSMUSG00000115049.1, intron 2 of 5) processed_transcript-intron (ENSMUSG00000115049.1, intron 2 of 5) 15439 ENSMUSG00000115049.1 ENSMUSG00000115049 ENSMUST00000227616 Gm49172 processed_transcript Interval_159004 chr8 88646325 88647888 + 0 NA promoter-TSS (ENSMUSG00000055994.15) protein_coding-promoter-TSS (ENSMUSG00000055994.15) -278 ENSMUSG00000055994.15 ENSMUSG00000055994 ENSMUST00000109634 Nod2 protein_coding Interval_82396 chr18 73687275 73687885 + 0 NA intron (ENSMUSG00000024515.13, intron 1 of 11) protein_coding-intron (ENSMUSG00000024515.13, intron 1 of 11) 20376 ENSMUSG00000118185.1 ENSMUSG00000118185 ENSMUST00000235991 Gm50126 processed_pseudogene Interval_118208 chr4 129541785 129543352 + 0 NA intron (ENSMUSG00000028800.15, intron 1 of 2) protein_coding-intron (ENSMUSG00000028800.15, intron 1 of 13) 15243 ENSMUSG00000099070.1 ENSMUSG00000099070 ENSMUST00000183371 Mir8119 miRNA Interval_142134 chr6 137528758 137529036 + 0 NA intron (ENSMUSG00000015766.14, intron 3 of 4) protein_coding-intron (ENSMUSG00000015766.14, intron 4 of 21) 41862 ENSMUSG00000015766.14 ENSMUSG00000015766 ENSMUST00000205037 Eps8 protein_coding Interval_70492 chr17 10771874 10772379 + 0 NA intron (ENSMUSG00000037196.6, intron 2 of 4) protein_coding-intron (ENSMUSG00000037196.6, intron 2 of 4) -35708 ENSMUSG00000089907.2 ENSMUSG00000089907 ENSMUST00000159155 Gm16169 processed_transcript Interval_87763 chr19 55714154 55715417 + 0 NA Intergenic Intergenic -27479 ENSMUSG00000024985.20 ENSMUSG00000024985 ENSMUST00000148666 Tcf7l2 protein_coding Interval_8440 chr1 139412157 139413606 + 0 NA intron (ENSMUSG00000102661.1, intron 2 of 2) lincRNA-intron (ENSMUSG00000102661.1, intron 2 of 2) 4603 ENSMUSG00000102661.1 ENSMUSG00000102661 ENSMUST00000193363 Gm34816 lincRNA Interval_126843 chr5 94266196 94266411 + 0 NA Intergenic Intergenic 40493 ENSMUSG00000094560.1 ENSMUSG00000094560 ENSMUST00000097479 A430089I19Rik protein_coding Interval_2892 chr1 48230912 48231972 + 0 NA Intergenic Intergenic 83409 ENSMUSG00000096973.1 ENSMUSG00000096973 ENSMUST00000181607 Gm5974 processed_pseudogene Interval_90358 chr2 29965164 29966160 + 0 NA promoter-TSS (ENSMUSG00000057738.14) protein_coding-promoter-TSS (ENSMUSG00000057738.14) -14415 ENSMUSG00000057738.14 ENSMUSG00000057738 ENSMUST00000201758 Sptan1 protein_coding Interval_17322 chr10 75859104 75860767 + 0 NA exon (ENSMUSG00000033307.7, exon 1 of 2) protein_coding-exon (ENSMUSG00000033307.7, exon 1 of 2) 257 ENSMUSG00000033307.7 ENSMUSG00000033307 ENSMUST00000218267 Mif protein_coding Interval_75296 chr17 65746491 65747302 + 0 NA intron (ENSMUSG00000056515.9, intron 1 of 2) protein_coding-intron (ENSMUSG00000056515.9, intron 1 of 6) 25744 ENSMUSG00000056515.9 ENSMUSG00000056515 ENSMUST00000233258 Rab31 protein_coding Interval_124331 chr5 44062177 44062412 + 0 NA intron (ENSMUSG00000029086.15, intron 2 of 25) protein_coding-intron (ENSMUSG00000029086.15, intron 2 of 21) -24629 ENSMUSG00000029086.15 ENSMUSG00000029086 ENSMUST00000198218 Prom1 protein_coding Interval_28183 chr11 73717758 73718099 + 0 NA promoter-TSS (ENSMUSG00000108598.1) unprocessed_pseudogene-promoter-TSS (ENSMUSG00000108598.1) -275 ENSMUSG00000108598.1 ENSMUSG00000108598 ENSMUST00000205381 Gm44665 unprocessed_pseudogene Interval_77196 chr17 87289222 87289459 + 0 NA intron (ENSMUSG00000036918.16, intron 1 of 1) protein_coding-intron (ENSMUSG00000036918.16, intron 1 of 19) 6392 ENSMUSG00000036918.16 ENSMUSG00000036918 ENSMUST00000148126 Ttc7 protein_coding Interval_105641 chr3 88296195 88297599 + 0 NA promoter-TSS (ENSMUSG00000001416.13) protein_coding-promoter-TSS (ENSMUSG00000001416.13) -1 ENSMUSG00000010538.14 ENSMUSG00000010538 ENSMUST00000123536 Tsacc protein_coding Interval_99791 chr2 164932762 164933332 + 0 NA Intergenic Intergenic 18957 ENSMUSG00000085436.1 ENSMUSG00000085436 ENSMUST00000142338 Zfp335os antisense Interval_141821 chr6 134713030 134713223 + 0 NA Intergenic Intergenic 11576 ENSMUSG00000042992.15 ENSMUSG00000042992 ENSMUST00000204133 Borcs5 protein_coding Interval_69130 chr16 90841230 90841432 + 0 NA intron (ENSMUSG00000116543.1, intron 1 of 3) protein_coding-intron (ENSMUSG00000039903.18, intron 1 of 7) 9632 ENSMUSG00000116543.1 ENSMUSG00000116543 ENSMUST00000232254 Gm36363 antisense Interval_38251 chr12 76645300 76646354 + 0 NA intron (ENSMUSG00000021061.15, intron 2 of 31) protein_coding-intron (ENSMUSG00000021061.15, intron 2 of 35) -46153 ENSMUSG00000088356.1 ENSMUSG00000088356 ENSMUST00000157731 Gm24010 misc_RNA Interval_136579 chr6 56013352 56013633 + 0 NA Intergenic Intergenic -4005 ENSMUSG00000002930.6 ENSMUSG00000002930 ENSMUST00000052827 Ppp1r17 protein_coding Interval_13297 chr10 14304897 14305379 + 0 NA intron (ENSMUSG00000112679.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000112679.1, intron 1 of 2) 8175 ENSMUSG00000112679.1 ENSMUSG00000112679 ENSMUST00000219975 Gm40603 lincRNA Interval_55465 chr14 87564107 87564556 + 0 NA Intergenic Intergenic 25232 ENSMUSG00000022019.16 ENSMUSG00000022019 ENSMUST00000227304 Tdrd3 protein_coding Interval_129592 chr5 121185134 121185444 + 0 NA promoter-TSS (ENSMUSG00000106940.1) TEC-promoter-TSS (ENSMUSG00000106940.1) -293 ENSMUSG00000106940.1 ENSMUSG00000106940 ENSMUST00000200872 Gm42930 TEC Interval_68977 chr16 89884100 89885406 + 0 NA exon (ENSMUSG00000002489.16, exon 5 of 28) protein_coding-exon (ENSMUSG00000002489.16, exon 5 of 28) -89471 ENSMUSG00000002489.16 ENSMUSG00000002489 ENSMUST00000136760 Tiam1 protein_coding Interval_63240 chr15 99890431 99891205 + 0 NA Intergenic Intergenic 7178 ENSMUSG00000116478.1 ENSMUSG00000116478 ENSMUST00000230043 Gm18890 processed_pseudogene Interval_102382 chr3 22901179 22901388 + 0 NA Intergenic Intergenic 89076 ENSMUSG00000102233.1 ENSMUSG00000102233 ENSMUST00000194174 Gm37889 TEC Interval_148624 chr7 83549175 83549457 + 0 NA exon (ENSMUSG00000094841.2, exon 1 of 2) lincRNA-exon (ENSMUSG00000094841.2, exon 1 of 2) 940 ENSMUSG00000094841.2 ENSMUSG00000094841 ENSMUST00000208877 Gm10610 lincRNA Interval_158874 chr8 87634877 87635846 + 0 NA Intergenic Intergenic -1296 ENSMUSG00000089301.1 ENSMUSG00000089301 ENSMUST00000158676 Gm24841 misc_RNA Interval_65423 chr16 22249093 22250831 + 0 NA exon (ENSMUSG00000022858.16, exon 1 of 1) protein_coding-exon (ENSMUSG00000022858.16, exon 1 of 1) 5794 ENSMUSG00000116761.1 ENSMUSG00000116761 ENSMUST00000232582 Gm36796 processed_pseudogene Interval_148778 chr7 87059398 87059620 + 0 NA Intergenic Intergenic -59358 ENSMUSG00000109334.1 ENSMUSG00000109334 ENSMUST00000208879 Gm44925 TEC Interval_99997 chr2 166316115 166316856 + 0 NA Intergenic Intergenic 42577 ENSMUSG00000084840.1 ENSMUSG00000084840 ENSMUST00000152987 Gm11468 lincRNA Interval_22294 chr11 8583979 8585395 + 0 NA intron (ENSMUSG00000020422.14, intron 3 of 30) protein_coding-intron (ENSMUSG00000020422.14, intron 3 of 30) 79994 ENSMUSG00000020422.14 ENSMUSG00000020422 ENSMUST00000134823 Tns3 protein_coding Interval_7726 chr1 133305913 133307621 + 0 NA Intergenic Intergenic -3060 ENSMUSG00000098306.9 ENSMUSG00000098306 ENSMUST00000183489 Gm28040 protein_coding Interval_140411 chr6 117931623 117933149 + 0 NA Intergenic Intergenic 3207 ENSMUSG00000093105.1 ENSMUSG00000093105 ENSMUST00000175364 Gm25535 miRNA Interval_102020 chr3 15112389 15112643 + 0 NA Intergenic Intergenic 58926 ENSMUSG00000103912.1 ENSMUSG00000103912 ENSMUST00000194008 Gm33819 lincRNA Interval_9920 chr1 164123864 164124074 + 0 NA intron (ENSMUSG00000026580.16, intron 2 of 15) protein_coding-intron (ENSMUSG00000026580.16, intron 2 of 15) 8705 ENSMUSG00000026580.16 ENSMUSG00000026580 ENSMUST00000162102 Selp protein_coding Interval_125222 chr5 65484025 65484301 + 0 NA intron (ENSMUSG00000037822.12, intron 1 of 2) protein_coding-intron (ENSMUSG00000037822.12, intron 1 of 5) -6102 ENSMUSG00000104641.1 ENSMUSG00000104641 ENSMUST00000200359 Gm43290 TEC Interval_155363 chr8 32514989 32515190 + 0 NA intron (ENSMUSG00000062991.9, intron 1 of 12) protein_coding-intron (ENSMUSG00000062991.9, intron 1 of 8) 328960 ENSMUSG00000089370.1 ENSMUSG00000089370 ENSMUST00000158745 Gm22140 snRNA Interval_50620 chr14 16733860 16734607 + 0 NA intron (ENSMUSG00000017491.9, intron 1 of 3) protein_coding-intron (ENSMUSG00000017491.9, intron 1 of 3) -158406 ENSMUSG00000017491.9 ENSMUSG00000017491 ENSMUST00000225245 Rarb protein_coding Interval_75545 chr17 67935579 67935765 + 0 NA intron (ENSMUSG00000024043.13, intron 1 of 17) protein_coding-intron (ENSMUSG00000024043.13, intron 1 of 17) -62624 ENSMUSG00000024043.13 ENSMUSG00000024043 ENSMUST00000170581 Arhgap28 protein_coding Interval_142725 chr6 145173864 145174411 + 0 NA TTS (ENSMUSG00000043541.16) protein_coding-TTS (ENSMUSG00000043541.16) -8138 ENSMUSG00000086863.1 ENSMUSG00000086863 ENSMUST00000141307 Gm15543 antisense Interval_108477 chr3 127529818 127530945 + 0 NA Intergenic Intergenic -14847 ENSMUSG00000076252.1 ENSMUSG00000076252 ENSMUST00000102297 Mir302b miRNA Interval_17969 chr10 81127708 81129536 + 0 NA promoter-TSS (ENSMUSG00000035027.18) protein_coding-promoter-TSS (ENSMUSG00000035027.18) -7944 ENSMUSG00000035011.15 ENSMUSG00000035011 ENSMUST00000117956 Zbtb7a protein_coding Interval_55745 chr14 99516476 99517816 + 0 NA Intergenic Intergenic -5399 ENSMUSG00000115580.1 ENSMUSG00000115580 ENSMUST00000228876 Gm41230 lincRNA Interval_5112 chr1 85751582 85752762 + 0 NA TTS (ENSMUSG00000098634.1) miRNA-TTS (ENSMUSG00000098634.1) 224 ENSMUSG00000098634.1 ENSMUSG00000098634 ENSMUST00000184526 Mir8096 miRNA Interval_34134 chr11 120833316 120834179 + 0 NA intron (ENSMUSG00000087638.1, intron 1 of 1) protein_coding-intron (ENSMUSG00000048445.6, intron 18 of 18) 2718 ENSMUSG00000087638.1 ENSMUSG00000087638 ENSMUST00000138256 Gm11773 antisense Interval_36577 chr12 50734462 50735222 + 0 NA Intergenic Intergenic -18255 ENSMUSG00000112372.1 ENSMUSG00000112372 ENSMUST00000220240 Gm48779 lincRNA Interval_23286 chr11 21174362 21175036 + 0 NA Intergenic Intergenic 23277 ENSMUSG00000088223.1 ENSMUSG00000088223 ENSMUST00000157598 Gm22600 misc_RNA Interval_131358 chr5 136697568 136697855 + 0 NA promoter-TSS (ENSMUSG00000005474.9) protein_coding-promoter-TSS (ENSMUSG00000005474.9) -68 ENSMUSG00000005474.9 ENSMUSG00000005474 ENSMUST00000197849 Myl10 protein_coding Interval_16044 chr10 60270039 60270315 + 0 NA Intergenic Intergenic -7451 ENSMUSG00000004207.14 ENSMUSG00000004207 ENSMUST00000165878 Psap protein_coding Interval_64930 chr16 17311140 17311368 + 0 NA intron (ENSMUSG00000041720.14, intron 29 of 54) protein_coding-intron (ENSMUSG00000041720.14, intron 29 of 54) -20129 ENSMUSG00000022766.14 ENSMUSG00000022766 ENSMUST00000231884 Serpind1 protein_coding Interval_1436 chr1 23370778 23371633 + 0 NA intron (ENSMUSG00000026158.11, intron 7 of 7) protein_coding-intron (ENSMUSG00000026158.11, intron 6 of 6) -24606 ENSMUSG00000101226.1 ENSMUSG00000101226 ENSMUST00000189078 Gm20954 processed_pseudogene Interval_23059 chr11 19523905 19524962 + 0 NA Intergenic Intergenic 103628 ENSMUSG00000086911.1 ENSMUSG00000086911 ENSMUST00000146531 Gm12027 lincRNA Interval_80947 chr18 50858738 50860166 + 0 NA Intergenic Intergenic -143652 ENSMUSG00000118088.1 ENSMUSG00000118088 ENSMUST00000236182 Gm3815 processed_pseudogene Interval_90128 chr2 28419893 28420351 + 0 NA Intergenic Intergenic -27819 ENSMUSG00000035829.13 ENSMUSG00000035829 ENSMUST00000040324 Ppp1r26 protein_coding Interval_111607 chr4 24495728 24497124 + 0 NA promoter-TSS (ENSMUSG00000045751.16) protein_coding-promoter-TSS (ENSMUSG00000045751.16) -25 ENSMUSG00000045751.16 ENSMUSG00000045751 ENSMUST00000123984 Mms22l protein_coding Interval_43502 chr13 31968875 31969363 + 0 NA intron (ENSMUSG00000038372.14, intron 7 of 10) protein_coding-intron (ENSMUSG00000038372.14, intron 7 of 10) -1967 ENSMUSG00000113935.1 ENSMUSG00000113935 ENSMUST00000221737 Gm35732 antisense Interval_157275 chr8 68877873 68878232 + 0 NA Intergenic Intergenic -2503 ENSMUSG00000015568.16 ENSMUSG00000015568 ENSMUST00000169749 Lpl protein_coding Interval_68621 chr16 81664367 81664884 + 0 NA Intergenic Intergenic -127591 ENSMUSG00000116803.1 ENSMUSG00000116803 ENSMUST00000231467 Gm49558 processed_pseudogene Interval_166121 chr9 56864558 56865239 + 0 NA promoter-TSS (ENSMUSG00000032911.6) protein_coding-promoter-TSS (ENSMUSG00000032911.6) -219 ENSMUSG00000045620.7 ENSMUSG00000045620 ENSMUST00000215694 Odf3l1 protein_coding Interval_80981 chr18 52233022 52233473 + 0 NA Intergenic Intergenic -78640 ENSMUSG00000096863.1 ENSMUSG00000096863 ENSMUST00000178926 Gm22259 snRNA Interval_158866 chr8 87539835 87540499 + 0 NA Intergenic Intergenic -23686 ENSMUSG00000069971.5 ENSMUSG00000069971 ENSMUST00000093342 4933402J07Rik protein_coding Interval_116035 chr4 107130465 107130875 + 0 NA intron (ENSMUSG00000085304.1, intron 2 of 3) antisense-intron (ENSMUSG00000085304.1, intron 2 of 3) 4057 ENSMUSG00000085304.1 ENSMUSG00000085304 ENSMUST00000145510 Gm12802 antisense Interval_60910 chr15 77798235 77800839 + 0 NA intron (ENSMUSG00000022443.17, intron 3 of 7) protein_coding-intron (ENSMUSG00000022443.17, intron 3 of 40) -18404 ENSMUSG00000022443.17 ENSMUSG00000022443 ENSMUST00000134878 Myh9 protein_coding Interval_149163 chr7 95625256 95625908 + 0 NA Intergenic Intergenic 150636 ENSMUSG00000108429.1 ENSMUSG00000108429 ENSMUST00000206820 Gm44603 processed_pseudogene Interval_59643 chr15 57291176 57292056 + 0 NA intron (ENSMUSG00000022366.12, intron 2 of 11) protein_coding-intron (ENSMUSG00000022366.12, intron 2 of 11) -26479 ENSMUSG00000022366.12 ENSMUSG00000022366 ENSMUST00000137764 Slc22a22 protein_coding Interval_136018 chr6 49708508 49708775 + 0 NA Intergenic Intergenic 18882 ENSMUSG00000107982.1 ENSMUSG00000107982 ENSMUST00000203005 Gm44219 processed_pseudogene Interval_77976 chr18 6301209 6301575 + 0 NA Intergenic Intergenic -31240 ENSMUSG00000073640.3 ENSMUSG00000073640 ENSMUST00000097682 Rpl27-ps3 processed_pseudogene Interval_99328 chr2 159079448 159080069 + 0 NA Intergenic Intergenic 9895 ENSMUSG00000104628.1 ENSMUSG00000104628 ENSMUST00000196974 Gm44319 miRNA Interval_85973 chr19 34474261 34476157 + 0 NA promoter-TSS (ENSMUSG00000050370.5) protein_coding-promoter-TSS (ENSMUSG00000050370.5) -45 ENSMUSG00000050370.5 ENSMUSG00000050370 ENSMUST00000050562 Ch25h protein_coding Interval_50836 chr14 20136867 20137194 + 0 NA intron (ENSMUSG00000045107.5, intron 1 of 1) protein_coding-intron (ENSMUSG00000045107.5, intron 1 of 1) 1504 ENSMUSG00000045107.5 ENSMUSG00000045107 ENSMUST00000226090 Saysd1 protein_coding Interval_47733 chr13 91916382 91917147 + 0 NA intron (ENSMUSG00000021708.17, intron 6 of 14) protein_coding-intron (ENSMUSG00000021708.17, intron 25 of 33) -39879 ENSMUSG00000021622.3 ENSMUSG00000021622 ENSMUST00000022122 Ckmt2 protein_coding Interval_96344 chr2 121806216 121807633 + 0 NA promoter-TSS (ENSMUSG00000027238.17) protein_coding-promoter-TSS (ENSMUSG00000027238.17) 59793 ENSMUSG00000086913.1 ENSMUSG00000086913 ENSMUST00000131514 Gm14019 antisense Interval_70777 chr17 14411144 14411378 + 0 NA Intergenic Intergenic -2229 ENSMUSG00000116688.2 ENSMUSG00000116688 ENSMUST00000231488 Gm49720 processed_pseudogene Interval_61676 chr15 83337675 83338854 + 0 NA intron (ENSMUSG00000054277.8, intron 2 of 15) protein_coding-intron (ENSMUSG00000054277.8, intron 2 of 15) -4997 ENSMUSG00000054277.8 ENSMUSG00000054277 ENSMUST00000227511 Arfgap3 protein_coding Interval_122230 chr5 20505331 20505713 + 0 NA intron (ENSMUSG00000040003.18, intron 6 of 15) protein_coding-intron (ENSMUSG00000040003.18, intron 10 of 22) -83074 ENSMUSG00000106240.1 ENSMUSG00000106240 ENSMUST00000196129 Gm3544 processed_pseudogene Interval_109637 chr3 145619805 145620221 + 0 NA Intergenic Intergenic 29968 ENSMUSG00000028195.4 ENSMUSG00000028195 ENSMUST00000029846 Ccn1 protein_coding Interval_101928 chr3 11844040 11844397 + 0 NA exon (ENSMUSG00000104015.1, exon 1 of 5) lincRNA-exon (ENSMUSG00000104015.1, exon 1 of 5) 141 ENSMUSG00000104015.1 ENSMUSG00000104015 ENSMUST00000192022 Gm10745 lincRNA Interval_155737 chr8 36591386 36591558 + 0 NA intron (ENSMUSG00000031523.16, intron 7 of 17) protein_coding-intron (ENSMUSG00000031523.16, intron 3 of 13) 102281 ENSMUSG00000039620.17 ENSMUSG00000039620 ENSMUST00000125492 Trmt9b protein_coding Interval_171466 chr9 118545003 118545782 + 0 NA exon (ENSMUSG00000038708.10, exon 1 of 1) protein_coding-exon (ENSMUSG00000038708.10, exon 1 of 1) -3016 ENSMUSG00000038708.10 ENSMUSG00000038708 ENSMUST00000211826 Golga4 protein_coding Interval_17518 chr10 77456504 77456892 + 0 NA Intergenic Intergenic -1219 ENSMUSG00000112818.1 ENSMUSG00000112818 ENSMUST00000218522 Gm35920 lincRNA Interval_152210 chr7 130664217 130665774 + 0 NA intron (ENSMUSG00000030852.18, intron 2 of 3) protein_coding-intron (ENSMUSG00000030852.18, intron 3 of 20) -10603 ENSMUSG00000109225.1 ENSMUSG00000109225 ENSMUST00000207466 4930513N20Rik TEC Interval_47300 chr13 80882804 80883447 + 0 NA promoter-TSS (ENSMUSG00000074794.10) protein_coding-promoter-TSS (ENSMUSG00000074794.10) 2399 ENSMUSG00000089827.1 ENSMUSG00000089827 ENSMUST00000161006 1700023H06Rik processed_transcript Interval_165071 chr9 44287279 44289338 + 0 NA promoter-TSS (ENSMUSG00000032131.16) protein_coding-promoter-TSS (ENSMUSG00000032131.16) 4155 ENSMUSG00000111291.1 ENSMUSG00000111291 ENSMUST00000217413 Gm48604 lincRNA Interval_173540 chrX 99048038 99049542 + 0 NA intron (ENSMUSG00000031216.13, intron 1 of 2) protein_coding-intron (ENSMUSG00000031216.13, intron 1 of 13) 33612 ENSMUSG00000083310.2 ENSMUSG00000083310 ENSMUST00000119692 Gm5760 processed_pseudogene Interval_20239 chr10 116364020 116364223 + 0 NA intron (ENSMUSG00000020154.10, intron 28 of 33) protein_coding-intron (ENSMUSG00000020154.10, intron 26 of 31) 23538 ENSMUSG00000065086.1 ENSMUSG00000065086 ENSMUST00000083152 Gm26495 snoRNA Interval_171718 chr9 120455770 120456669 + 0 NA intron (ENSMUSG00000041794.13, intron 12 of 16) protein_coding-intron (ENSMUSG00000041794.13, intron 12 of 16) -36013 ENSMUSG00000006941.5 ENSMUSG00000006941 ENSMUST00000007139 Eif1b protein_coding Interval_155785 chr8 37627168 37627928 + 0 NA intron (ENSMUSG00000039539.13, intron 4 of 9) protein_coding-intron (ENSMUSG00000039539.13, intron 4 of 7) 161144 ENSMUSG00000081316.1 ENSMUSG00000081316 ENSMUST00000117720 Gm16205 processed_pseudogene Interval_95318 chr2 106460826 106461739 + 0 NA Intergenic Intergenic 61821 ENSMUSG00000087226.1 ENSMUSG00000087226 ENSMUST00000130634 Gm14015 lincRNA Interval_148351 chr7 80682633 80683182 + 0 NA intron (ENSMUSG00000030527.15, intron 1 of 1) protein_coding-intron (ENSMUSG00000030527.15, intron 1 of 14) 46890 ENSMUSG00000084821.1 ENSMUSG00000084821 ENSMUST00000142678 Gm15880 antisense Interval_171954 chr9 122922550 122923487 + 0 NA promoter-TSS (ENSMUSG00000057895.11) protein_coding-promoter-TSS (ENSMUSG00000057895.11) -81 ENSMUSG00000057895.11 ENSMUSG00000057895 ENSMUST00000148851 Zfp105 protein_coding Interval_160907 chr8 114881929 114883109 + 0 NA intron (ENSMUSG00000004637.15, intron 8 of 8) protein_coding-intron (ENSMUSG00000004637.15, intron 8 of 8) 170352 ENSMUSG00000004637.15 ENSMUSG00000004637 ENSMUST00000162052 Wwox protein_coding Interval_106908 chr3 101795769 101796734 + 0 NA Intergenic Intergenic 48127 ENSMUSG00000105642.1 ENSMUSG00000105642 ENSMUST00000199434 Gm43134 lincRNA Interval_124457 chr5 48302749 48302940 + 0 NA TTS (ENSMUSG00000031558.15) protein_coding-TTS (ENSMUSG00000031558.15) -21768 ENSMUSG00000106604.1 ENSMUSG00000106604 ENSMUST00000197312 Gm42535 TEC Interval_64252 chr16 9836721 9836968 + 0 NA intron (ENSMUSG00000059003.12, intron 3 of 13) protein_coding-intron (ENSMUSG00000059003.12, intron 1 of 11) 158079 ENSMUSG00000059003.12 ENSMUSG00000059003 ENSMUST00000197242 Grin2a protein_coding Interval_136206 chr6 52030806 52031682 + 0 NA Intergenic Intergenic 18643 ENSMUSG00000108244.1 ENSMUSG00000108244 ENSMUST00000203453 Gm44077 lincRNA Interval_39695 chr12 93162178 93162585 + 0 NA Intergenic Intergenic -164230 ENSMUSG00000113194.1 ENSMUSG00000113194 ENSMUST00000223384 Gm47998 processed_pseudogene Interval_108308 chr3 123527907 123528836 + 0 NA TTS (ENSMUSG00000027977.15) protein_coding-TTS (ENSMUSG00000027977.15) -17697 ENSMUSG00000104670.1 ENSMUSG00000104670 ENSMUST00000196009 Gm9369 processed_pseudogene Interval_63924 chr16 4593935 4595929 + 0 NA exon (ENSMUSG00000014303.13, exon 1 of 7) protein_coding-exon (ENSMUSG00000014303.13, exon 1 of 7) -6231 ENSMUSG00000014303.13 ENSMUSG00000014303 ENSMUST00000127120 Glis2 protein_coding Interval_106245 chr3 94886264 94887412 + 0 NA promoter-TSS (ENSMUSG00000005779.12) protein_coding-promoter-TSS (ENSMUSG00000005779.12) -883 ENSMUSG00000005779.12 ENSMUSG00000005779 ENSMUST00000200513 Psmb4 protein_coding Interval_109088 chr3 135656065 135656289 + 0 NA intron (ENSMUSG00000028163.17, intron 4 of 24) protein_coding-intron (ENSMUSG00000028163.17, intron 5 of 24) -1611 ENSMUSG00000106149.1 ENSMUSG00000106149 ENSMUST00000196513 Gm43430 TEC Interval_68336 chr16 73431610 73432244 + 0 NA Intergenic Intergenic -8968 ENSMUSG00000064830.1 ENSMUSG00000064830 ENSMUST00000082896 Gm25699 snRNA Interval_159832 chr8 104170246 104171460 + 0 NA promoter-TSS (ENSMUSG00000031872.14) protein_coding-promoter-TSS (ENSMUSG00000031872.14) -41 ENSMUSG00000031872.14 ENSMUSG00000031872 ENSMUST00000213077 Bean1 protein_coding Interval_64699 chr16 14272402 14272845 + 0 NA intron (ENSMUSG00000018830.10, intron 2 of 41) protein_coding-intron (ENSMUSG00000018830.10, intron 2 of 40) 18742 ENSMUSG00000018830.10 ENSMUSG00000018830 ENSMUST00000230643 Myh11 protein_coding Interval_92935 chr2 68798798 68799329 + 0 NA Intergenic Intergenic -31954 ENSMUSG00000082836.1 ENSMUSG00000082836 ENSMUST00000119276 Gm13612 processed_pseudogene Interval_6299 chr1 105680302 105680847 + 0 NA intron (ENSMUSG00000026319.13, intron 2 of 27) protein_coding-intron (ENSMUSG00000026319.13, intron 2 of 28) 16133 ENSMUSG00000026319.13 ENSMUSG00000026319 ENSMUST00000188588 Relch protein_coding Interval_153383 chr7 144239972 144240251 + 0 NA intron (ENSMUSG00000037541.22, intron 1 of 12) protein_coding-intron (ENSMUSG00000037541.22, intron 4 of 15) 1386 ENSMUSG00000037541.22 ENSMUSG00000037541 ENSMUST00000136979 Shank2 protein_coding Interval_97873 chr2 144637301 144638865 + 0 NA intron (ENSMUSG00000027430.12, intron 3 of 4) protein_coding-intron (ENSMUSG00000027430.12, intron 4 of 5) -19850 ENSMUSG00000092833.1 ENSMUSG00000092833 ENSMUST00000175092 Gm24823 miRNA Interval_73395 chr17 36957997 36959960 + 0 NA promoter-TSS (ENSMUSG00000036315.13) protein_coding-promoter-TSS (ENSMUSG00000036315.13) -419 ENSMUSG00000036315.13 ENSMUSG00000036315 ENSMUST00000174466 Znrd1 protein_coding Interval_34833 chr12 12384121 12384596 + 0 NA intron (ENSMUSG00000114136.1, intron 2 of 4) antisense-intron (ENSMUSG00000114136.1, intron 2 of 4) 8257 ENSMUSG00000114136.1 ENSMUSG00000114136 ENSMUST00000220545 4921511I17Rik antisense Interval_6270 chr1 105070365 105071896 + 0 NA Intergenic Intergenic -45324 ENSMUSG00000099669.1 ENSMUSG00000099669 ENSMUST00000187882 Gm29012 lincRNA Interval_103741 chr3 52262550 52262997 + 0 NA Intergenic Intergenic -5563 ENSMUSG00000044167.6 ENSMUSG00000044167 ENSMUST00000053764 Foxo1 protein_coding Interval_96213 chr2 120552370 120552750 + 0 NA intron (ENSMUSG00000027288.16, intron 1 of 2) protein_coding-intron (ENSMUSG00000027288.16, intron 2 of 21) -12700 ENSMUSG00000027288.16 ENSMUSG00000027288 ENSMUST00000147353 Zfp106 protein_coding Interval_149178 chr7 95991079 95992200 + 0 NA Intergenic Intergenic -78253 ENSMUSG00000108628.1 ENSMUSG00000108628 ENSMUST00000205327 Gm5037 processed_pseudogene Interval_131194 chr5 135723948 135726153 + 0 NA promoter-TSS (ENSMUSG00000005514.14) protein_coding-promoter-TSS (ENSMUSG00000005514.14) 10839 ENSMUSG00000099197.1 ENSMUSG00000099197 ENSMUST00000184682 Mir7034 miRNA Interval_21022 chr10 123426339 123426530 + 0 NA intron (ENSMUSG00000044071.9, intron 1 of 4) protein_coding-intron (ENSMUSG00000044071.9, intron 1 of 5) -6132 ENSMUSG00000084461.1 ENSMUSG00000084461 ENSMUST00000122512 Gm22958 snRNA Interval_173736 chrX 103287059 103289279 + 0 NA promoter-TSS (ENSMUSG00000031325.15) transcribed_unitary_pseudogene-promoter-TSS (ENSMUSG00000031325.15) -91 ENSMUSG00000031325.15 ENSMUSG00000031325 ENSMUST00000183315 4930519F16Rik transcribed_unitary_pseudogene Interval_134105 chr6 20226629 20226856 + 0 NA Intergenic Intergenic 438689 ENSMUSG00000107067.1 ENSMUSG00000107067 ENSMUST00000201774 Gm42581 processed_pseudogene Interval_115646 chr4 101585113 101585969 + 0 NA intron (ENSMUSG00000028528.17, intron 1 of 18) protein_coding-intron (ENSMUSG00000028528.17, intron 1 of 18) 30446 ENSMUSG00000089446.1 ENSMUSG00000089446 ENSMUST00000158821 Gm22533 misc_RNA Interval_168903 chr9 88491501 88491912 + 0 NA Intergenic Intergenic -10482 ENSMUSG00000032423.12 ENSMUSG00000032423 ENSMUST00000172508 Syncrip protein_coding Interval_126762 chr5 92698112 92699636 + 0 NA intron (ENSMUSG00000029381.16, intron 1 of 11) protein_coding-intron (ENSMUSG00000029381.16, intron 1 of 10) -37331 ENSMUSG00000092266.1 ENSMUSG00000092266 ENSMUST00000174621 Gm20500 sense_intronic Interval_48089 chr13 95928728 95929015 + 0 NA Intergenic Intergenic -31751 ENSMUSG00000065866.1 ENSMUSG00000065866 ENSMUST00000083932 Gm24032 snRNA Interval_73696 chr17 42853336 42853568 + 0 NA intron (ENSMUSG00000061665.7, intron 1 of 17) protein_coding-intron (ENSMUSG00000061665.7, intron 1 of 17) -22422 ENSMUSG00000061665.7 ENSMUSG00000061665 ENSMUST00000233626 Cd2ap protein_coding Interval_35891 chr12 31643795 31645765 + 0 NA intron (ENSMUSG00000020648.3, intron 4 of 6) protein_coding-intron (ENSMUSG00000020648.3, intron 4 of 6) 9996 ENSMUSG00000020648.3 ENSMUSG00000020648 ENSMUST00000219855 Dus4l protein_coding Interval_37622 chr12 70477107 70478000 + 0 NA Intergenic Intergenic -1062 ENSMUSG00000113944.1 ENSMUSG00000113944 ENSMUST00000222328 Gm48847 lincRNA Interval_141480 chr6 128510902 128511076 + 0 NA intron (ENSMUSG00000030359.14, intron 12 of 35) protein_coding-intron (ENSMUSG00000030359.14, intron 12 of 35) 18736 ENSMUSG00000107764.1 ENSMUSG00000107764 ENSMUST00000205249 Gm5318 processed_pseudogene Interval_9464 chr1 157426137 157426590 + 0 NA Intergenic Intergenic 13385 ENSMUSG00000049881.13 ENSMUSG00000049881 ENSMUST00000189791 2810025M15Rik transcribed_processed_pseudogene Interval_169202 chr9 95473092 95473595 + 0 NA intron (ENSMUSG00000032407.14, intron 23 of 27) protein_coding-intron (ENSMUSG00000032407.14, intron 22 of 26) 38542 ENSMUSG00000032407.14 ENSMUSG00000032407 ENSMUST00000188017 U2surp protein_coding Interval_173113 chrX 72220128 72220448 + 0 NA Intergenic Intergenic -1729 ENSMUSG00000033343.1 ENSMUSG00000033343 ENSMUST00000048675 Magea4 protein_coding Interval_98595 chr2 153478482 153479183 + 0 NA intron (ENSMUSG00000061411.12, intron 1 of 3) protein_coding-intron (ENSMUSG00000061411.12, intron 2 of 10) 894 ENSMUSG00000061411.12 ENSMUSG00000061411 ENSMUST00000156786 Nol4l protein_coding Interval_158697 chr8 85364998 85365433 + 0 NA exon (ENSMUSG00000031698.14, exon 1 of 13) protein_coding-exon (ENSMUSG00000031698.14, exon 1 of 13) 15819 ENSMUSG00000031698.14 ENSMUSG00000031698 ENSMUST00000138825 Mylk3 protein_coding Interval_34113 chr11 120706859 120708215 + 0 NA intron (ENSMUSG00000025142.18, intron 10 of 13) protein_coding-intron (ENSMUSG00000025142.18, intron 12 of 15) -1321 ENSMUSG00000025142.18 ENSMUSG00000025142 ENSMUST00000172392 Aspscr1 protein_coding Interval_105099 chr3 81193672 81194248 + 0 NA intron (ENSMUSG00000028019.9, intron 4 of 5) protein_coding-intron (ENSMUSG00000028019.9, intron 3 of 5) -153523 ENSMUSG00000085106.1 ENSMUSG00000085106 ENSMUST00000146657 Gm16000 antisense Interval_66666 chr16 35973697 35974909 + 0 NA intron (ENSMUSG00000086324.8, intron 2 of 3) antisense-intron (ENSMUSG00000086324.8, intron 1 of 2) 6778 ENSMUSG00000086324.8 ENSMUSG00000086324 ENSMUST00000144134 Gm15564 antisense Interval_135627 chr6 41781185 41781372 + 0 NA Intergenic Intergenic -6101 ENSMUSG00000045479.7 ENSMUSG00000045479 ENSMUST00000050412 Olfr459 protein_coding Interval_78621 chr18 15431068 15432151 + 0 NA TTS (ENSMUSG00000117541.1) antisense-TTS (ENSMUSG00000117541.1) 28522 ENSMUSG00000117541.1 ENSMUSG00000117541 ENSMUST00000234487 Gm50048 antisense Interval_3865 chr1 63953193 63954284 + 0 NA Intergenic Intergenic -10989 ENSMUSG00000044689.5 ENSMUSG00000044689 ENSMUST00000133244 Gm13749 lincRNA Interval_127108 chr5 100345252 100345845 + 0 NA intron (ENSMUSG00000085915.1, intron 1 of 4) unprocessed_pseudogene-intron (ENSMUSG00000085915.1, intron 1 of 4) 9571 ENSMUSG00000085915.1 ENSMUSG00000085915 ENSMUST00000150506 Gm8091 unprocessed_pseudogene Interval_30162 chr11 90015427 90015674 + 0 NA Intergenic Intergenic -12656 ENSMUSG00000020553.8 ENSMUSG00000020553 ENSMUST00000020864 Pctp protein_coding Interval_7817 chr1 133889271 133890591 + 0 NA Intergenic Intergenic -16600 ENSMUSG00000090208.1 ENSMUSG00000090208 ENSMUST00000160564 Gm15851 antisense Interval_59538 chr15 55134799 55136153 + 0 NA intron (ENSMUSG00000022419.16, intron 1 of 4) protein_coding-intron (ENSMUSG00000022419.16, intron 1 of 8) 2023 ENSMUSG00000022419.16 ENSMUSG00000022419 ENSMUST00000226687 Deptor protein_coding Interval_117098 chr4 119511599 119512698 + 0 NA Intergenic Intergenic -2087 ENSMUSG00000082814.1 ENSMUSG00000082814 ENSMUST00000122184 Gm12956 processed_pseudogene Interval_134201 chr6 22749466 22750180 + 0 NA Intergenic Intergenic -9576 ENSMUSG00000107303.1 ENSMUSG00000107303 ENSMUST00000202509 Gm18861 processed_pseudogene Interval_170957 chr9 113270636 113270825 + 0 NA Intergenic Intergenic -16977 ENSMUSG00000111022.1 ENSMUSG00000111022 ENSMUST00000217623 Gm36367 lincRNA Interval_41691 chr12 117778724 117779177 + 0 NA Intergenic Intergenic 54978 ENSMUSG00000113840.1 ENSMUSG00000113840 ENSMUST00000223173 Gm18955 processed_pseudogene Interval_83158 chr18 82405725 82407593 + 0 NA exon (ENSMUSG00000024553.8, exon 1 of 3) protein_coding-exon (ENSMUSG00000024553.8, exon 1 of 3) 118 ENSMUSG00000024553.8 ENSMUSG00000024553 ENSMUST00000065224 Galr1 protein_coding Interval_151354 chr7 121563395 121563982 + 0 NA exon (ENSMUSG00000108811.1, exon 3 of 3) antisense-exon (ENSMUSG00000108811.1, exon 3 of 3) 26148 ENSMUSG00000108811.1 ENSMUSG00000108811 ENSMUST00000206244 4933432K03Rik antisense Interval_15871 chr10 58601172 58602426 + 0 NA exon (ENSMUSG00000003227.4, exon 12 of 12) protein_coding-exon (ENSMUSG00000003227.4, exon 12 of 12) 46532 ENSMUSG00000112670.1 ENSMUSG00000112670 ENSMUST00000219887 Gm18042 processed_pseudogene Interval_95646 chr2 113432567 113432860 + 0 NA intron (ENSMUSG00000044042.19, intron 2 of 17) protein_coding-intron (ENSMUSG00000044042.19, intron 3 of 18) 8381 ENSMUSG00000085448.1 ENSMUSG00000085448 ENSMUST00000143525 Gm13963 antisense Interval_125710 chr5 73431481 73431949 + 0 NA intron (ENSMUSG00000029154.13, intron 1 of 2) protein_coding-intron (ENSMUSG00000029154.13, intron 11 of 15) 1384 ENSMUSG00000029154.13 ENSMUSG00000029154 ENSMUST00000135820 Cwh43 protein_coding Interval_66807 chr16 37789884 37791376 + 0 NA intron (ENSMUSG00000022816.11, intron 1 of 2) protein_coding-intron (ENSMUSG00000022816.11, intron 2 of 10) 13575 ENSMUSG00000022816.11 ENSMUSG00000022816 ENSMUST00000123077 Fstl1 protein_coding Interval_144367 chr7 24714536 24714808 + 0 NA TTS (ENSMUSG00000045587.9) protein_coding-TTS (ENSMUSG00000045587.9) 5430 ENSMUSG00000045587.9 ENSMUSG00000045587 ENSMUST00000051714 Lypd10 protein_coding Interval_28483 chr11 76285659 76285857 + 0 NA intron (ENSMUSG00000020844.6, intron 1 of 7) protein_coding-intron (ENSMUSG00000020844.6, intron 1 of 7) 36546 ENSMUSG00000038046.4 ENSMUSG00000038046 ENSMUST00000155526 Mrm3 protein_coding Interval_5584 chr1 89967774 89969584 + 0 NA exon (ENSMUSG00000067081.13, exon 4 of 6) protein_coding-exon (ENSMUSG00000067081.13, exon 4 of 6) 27773 ENSMUSG00000067081.13 ENSMUSG00000067081 ENSMUST00000151330 Asb18 protein_coding Interval_163446 chr9 21477484 21477950 + 0 NA intron (ENSMUSG00000033335.17, intron 8 of 19) protein_coding-intron (ENSMUSG00000033335.17, intron 8 of 20) 18847 ENSMUSG00000065547.1 ENSMUSG00000065547 ENSMUST00000083613 Mir199a-1 miRNA Interval_131661 chr5 139129193 139130163 + 0 NA promoter-TSS (ENSMUSG00000025855.13) protein_coding-promoter-TSS (ENSMUSG00000025855.13) 20323 ENSMUSG00000025855.13 ENSMUSG00000025855 ENSMUST00000130180 Prkar1b protein_coding Interval_130136 chr5 124471603 124471813 + 0 NA promoter-TSS (ENSMUSG00000082402.1) processed_pseudogene-promoter-TSS (ENSMUSG00000082402.1) -719 ENSMUSG00000082402.1 ENSMUSG00000082402 ENSMUST00000119162 Gm15621 processed_pseudogene Interval_162108 chr8 125195537 125196249 + 0 NA intron (ENSMUSG00000043051.17, intron 10 of 13) protein_coding-intron (ENSMUSG00000043051.17, intron 9 of 12) 31430 ENSMUSG00000086694.1 ENSMUSG00000086694 ENSMUST00000156666 Gm16237 antisense Interval_167966 chr9 75037343 75038371 + 0 NA promoter-TSS (ENSMUSG00000007656.13) protein_coding-promoter-TSS (ENSMUSG00000007656.13) -14120 ENSMUSG00000007656.13 ENSMUSG00000007656 ENSMUST00000166549 Arpp19 protein_coding Interval_80317 chr18 39137275 39138346 + 0 NA intron (ENSMUSG00000036452.18, intron 10 of 22) protein_coding-intron (ENSMUSG00000036452.18, intron 10 of 22) -143618 ENSMUSG00000086991.1 ENSMUSG00000086991 ENSMUST00000131421 Gm15334 antisense Interval_6813 chr1 119806592 119806803 + 0 NA intron (ENSMUSG00000026384.13, intron 1 of 4) protein_coding-intron (ENSMUSG00000026384.13, intron 1 of 26) -7772 ENSMUSG00000103146.1 ENSMUSG00000103146 ENSMUST00000193304 Gm37745 TEC Interval_162061 chr8 124823178 124825088 + 0 NA intron (ENSMUSG00000036913.15, intron 6 of 10) protein_coding-intron (ENSMUSG00000036913.15, intron 6 of 10) -7565 ENSMUSG00000090118.1 ENSMUSG00000090118 ENSMUST00000161868 Gm16163 processed_transcript Interval_123471 chr5 32740190 32741164 + 0 NA promoter-TSS (ENSMUSG00000023452.19) protein_coding-promoter-TSS (ENSMUSG00000023452.19) 177 ENSMUSG00000023452.19 ENSMUSG00000023452 ENSMUST00000145759 Pisd protein_coding Interval_99103 chr2 157216227 157216650 + 0 NA intron (ENSMUSG00000074627.11, intron 20 of 24) protein_coding-intron (ENSMUSG00000074627.11, intron 20 of 24) -11904 ENSMUSG00000027641.13 ENSMUSG00000027641 ENSMUST00000141296 Rbl1 protein_coding Interval_35798 chr12 29943092 29943338 + 0 NA intron (ENSMUSG00000020674.17, intron 1 of 8) protein_coding-intron (ENSMUSG00000020674.17, intron 1 of 8) 5607 ENSMUSG00000020674.17 ENSMUSG00000020674 ENSMUST00000218620 Pxdn protein_coding Interval_8014 chr1 135208849 135209089 + 0 NA Intergenic Intergenic -23026 ENSMUSG00000079139.4 ENSMUSG00000079139 ENSMUST00000110798 Gm4204 processed_pseudogene Interval_163119 chr9 15409469 15409686 + 0 NA Intergenic Intergenic 15037 ENSMUSG00000111823.1 ENSMUSG00000111823 ENSMUST00000215651 Gm2517 processed_pseudogene Interval_55676 chr14 98906915 98907889 + 0 NA intron (ENSMUSG00000115242.1, intron 2 of 5) lincRNA-intron (ENSMUSG00000115242.1, intron 2 of 5) 13543 ENSMUSG00000115242.1 ENSMUSG00000115242 ENSMUST00000226462 Gm49018 lincRNA Interval_97342 chr2 135014868 135015075 + 0 NA intron (ENSMUSG00000051177.16, intron 3 of 6) protein_coding-intron (ENSMUSG00000051177.16, intron 3 of 31) 200645 ENSMUSG00000085247.1 ENSMUSG00000085247 ENSMUST00000138303 4930545L23Rik antisense Interval_31906 chr11 103757842 103759201 + 0 NA Intergenic Intergenic -8700 ENSMUSG00000018486.2 ENSMUSG00000018486 ENSMUST00000018630 Wnt9b protein_coding Interval_108763 chr3 131125911 131126256 + 0 NA intron (ENSMUSG00000027985.14, intron 2 of 2) protein_coding-intron (ENSMUSG00000027985.14, intron 3 of 11) -10702 ENSMUSG00000104612.1 ENSMUSG00000104612 ENSMUST00000200349 Gm42449 TEC Interval_141401 chr6 128028289 128028722 + 0 NA intron (ENSMUSG00000030352.15, intron 2 of 2) protein_coding-intron (ENSMUSG00000030352.15, intron 3 of 8) 6500 ENSMUSG00000030352.15 ENSMUSG00000030352 ENSMUST00000127075 Tspan9 protein_coding Interval_43511 chr13 32297426 32297773 + 0 NA intron (ENSMUSG00000038372.14, intron 1 of 3) protein_coding-intron (ENSMUSG00000038372.14, intron 1 of 10) 41025 ENSMUSG00000038372.14 ENSMUSG00000038372 ENSMUST00000179717 Gmds protein_coding Interval_26330 chr11 56295792 56296011 + 0 NA Intergenic Intergenic -32661 ENSMUSG00000065635.1 ENSMUSG00000065635 ENSMUST00000083701 Gm24253 snoRNA Interval_104702 chr3 69541261 69541496 + 0 NA intron (ENSMUSG00000027784.10, intron 2 of 3) protein_coding-intron (ENSMUSG00000027784.10, intron 2 of 3) 26086 ENSMUSG00000098006.1 ENSMUSG00000098006 ENSMUST00000183259 Gm8565 processed_pseudogene Interval_174230 chrX 140445617 140446393 + 0 NA exon (ENSMUSG00000082031.1, exon 1 of 1) processed_pseudogene-exon (ENSMUSG00000082031.1, exon 1 of 1) 377 ENSMUSG00000082031.1 ENSMUSG00000082031 ENSMUST00000117903 Gm8097 processed_pseudogene Interval_34746 chr12 9280967 9281411 + 0 NA Intergenic Intergenic -90249 ENSMUSG00000113913.1 ENSMUSG00000113913 ENSMUST00000223136 Gm46323 lincRNA Interval_40879 chr12 109038660 109039702 + 0 NA intron (ENSMUSG00000040867.13, intron 2 of 6) protein_coding-intron (ENSMUSG00000040867.13, intron 2 of 3) 14594 ENSMUSG00000040867.13 ENSMUSG00000040867 ENSMUST00000185745 Begain protein_coding Interval_23958 chr11 28852353 28854095 + 0 NA promoter-TSS (ENSMUSG00000020467.15) protein_coding-promoter-TSS (ENSMUSG00000020467.15) -62443 ENSMUSG00000020467.15 ENSMUSG00000020467 ENSMUST00000139713 Efemp1 protein_coding Interval_20964 chr10 122805764 122806304 + 0 NA intron (ENSMUSG00000034613.12, intron 3 of 5) protein_coding-intron (ENSMUSG00000034613.12, intron 3 of 9) -13551 ENSMUSG00000112220.1 ENSMUSG00000112220 ENSMUST00000220013 Gm36208 antisense Interval_174301 chrX 144283201 144284599 + 0 NA Intergenic Intergenic 4433 ENSMUSG00000083200.1 ENSMUSG00000083200 ENSMUST00000120163 Gm15066 processed_pseudogene Interval_142556 chr6 143238671 143238861 + 0 NA Intergenic Intergenic -7127 ENSMUSG00000072679.10 ENSMUSG00000072679 ENSMUST00000160951 D6Ertd474e lincRNA Interval_149601 chr7 99976093 99976516 + 0 NA intron (ENSMUSG00000058761.5, intron 1 of 5) protein_coding-intron (ENSMUSG00000058761.5, intron 1 of 5) -10570 ENSMUSG00000058761.5 ENSMUSG00000058761 ENSMUST00000174264 Rnf169 protein_coding Interval_162760 chr9 8675370 8675708 + 0 NA intron (ENSMUSG00000031997.9, intron 9 of 11) protein_coding-intron (ENSMUSG00000031997.9, intron 10 of 12) 65449 ENSMUSG00000111602.1 ENSMUSG00000111602 ENSMUST00000214779 Gm32014 lincRNA Interval_161190 chr8 118380282 118380834 + 0 NA intron (ENSMUSG00000031841.19, intron 2 of 8) protein_coding-intron (ENSMUSG00000031841.19, intron 1 of 13) 1633 ENSMUSG00000110662.1 ENSMUSG00000110662 ENSMUST00000213075 Gm45722 processed_pseudogene Interval_108766 chr3 131139643 131140474 + 0 NA intron (ENSMUSG00000027985.14, intron 2 of 2) protein_coding-intron (ENSMUSG00000027985.14, intron 3 of 11) 3273 ENSMUSG00000104612.1 ENSMUSG00000104612 ENSMUST00000200349 Gm42449 TEC Interval_60600 chr15 75605917 75606195 + 0 NA Intergenic Intergenic 9388 ENSMUSG00000022579.10 ENSMUSG00000022579 ENSMUST00000186934 Gpihbp1 protein_coding Interval_156000 chr8 41803574 41803784 + 0 NA Intergenic Intergenic -23588 ENSMUSG00000102046.1 ENSMUSG00000102046 ENSMUST00000188324 2810404M03Rik lincRNA Interval_110302 chr3 156284852 156285101 + 0 NA Intergenic Intergenic 20390 ENSMUSG00000104573.1 ENSMUSG00000104573 ENSMUST00000199214 Gm42886 processed_pseudogene Interval_147509 chr7 67846529 67849750 + 0 NA intron (ENSMUSG00000109193.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000109193.1, intron 1 of 2) 1493 ENSMUSG00000109193.1 ENSMUSG00000109193 ENSMUST00000208560 Gm39027 lincRNA Interval_145997 chr7 42980311 42980895 + 0 NA Intergenic Intergenic 22252 ENSMUSG00000076190.1 ENSMUSG00000076190 ENSMUST00000102235 Gm23256 miRNA Interval_126333 chr5 86777862 86778216 + 0 NA intron (ENSMUSG00000105704.1, intron 2 of 4) lincRNA-intron (ENSMUSG00000104937.1, intron 1 of 2) 4994 ENSMUSG00000104937.1 ENSMUSG00000104937 ENSMUST00000196789 Gm43057 lincRNA Interval_25497 chr11 49249997 49251197 + 0 NA promoter-TSS (ENSMUSG00000020346.16) protein_coding-promoter-TSS (ENSMUSG00000020346.16) 6406 ENSMUSG00000020346.16 ENSMUSG00000020346 ENSMUST00000135314 Mgat1 protein_coding Interval_171948 chr9 122855231 122855616 + 0 NA promoter-TSS (ENSMUSG00000047036.8) protein_coding-promoter-TSS (ENSMUSG00000047036.8) -7005 ENSMUSG00000111325.1 ENSMUSG00000111325 ENSMUST00000213573 Gm47140 sense_intronic Interval_71074 chr17 17686523 17686921 + 0 NA Intergenic Intergenic -17025 ENSMUSG00000092120.2 ENSMUSG00000092120 ENSMUST00000232113 Vmn2r90 protein_coding Interval_138638 chr6 90634687 90636375 + 0 NA intron (ENSMUSG00000030089.15, intron 6 of 10) protein_coding-intron (ENSMUSG00000030089.15, intron 5 of 9) 30806 ENSMUSG00000030089.15 ENSMUSG00000030089 ENSMUST00000032177 Slc41a3 protein_coding Interval_32435 chr11 107529210 107529646 + 0 NA Intergenic Intergenic -2208 ENSMUSG00000085864.1 ENSMUSG00000085864 ENSMUST00000149428 C330019F10Rik lincRNA Interval_174562 chrX 157819385 157819687 + 0 NA exon (ENSMUSG00000047485.6, exon 1 of 1) protein_coding-exon (ENSMUSG00000047485.6, exon 1 of 1) 1101 ENSMUSG00000047485.6 ENSMUSG00000047485 ENSMUST00000087157 Klhl34 protein_coding Interval_161208 chr8 118653927 118655472 + 0 NA intron (ENSMUSG00000031841.19, intron 2 of 7) protein_coding-intron (ENSMUSG00000031841.19, intron 2 of 13) -38820 ENSMUSG00000110667.1 ENSMUSG00000110667 ENSMUST00000211881 Gm45720 antisense Interval_42247 chr13 10872792 10873297 + 0 NA Intergenic Intergenic -101379 ENSMUSG00000113673.1 ENSMUSG00000113673 ENSMUST00000221075 Gm47486 lincRNA Interval_77548 chr17 91370426 91370834 + 0 NA Intergenic Intergenic -23058 ENSMUSG00000117471.1 ENSMUSG00000117471 ENSMUST00000233999 Gm49988 processed_pseudogene Interval_155814 chr8 39116730 39117527 + 0 NA intron (ENSMUSG00000039530.17, intron 4 of 5) protein_coding-intron (ENSMUSG00000039530.17, intron 6 of 9) -83921 ENSMUSG00000109922.1 ENSMUSG00000109922 ENSMUST00000211091 Gm20948 processed_pseudogene Interval_8686 chr1 147781314 147782051 + 0 NA Intergenic Intergenic -208403 ENSMUSG00000101973.1 ENSMUSG00000101973 ENSMUST00000190402 Gm29516 processed_pseudogene Interval_4036 chr1 66756044 66757076 + 0 NA intron (ENSMUSG00000026004.15, intron 5 of 13) protein_coding-intron (ENSMUSG00000026004.15, intron 6 of 13) 12171 ENSMUSG00000102559.1 ENSMUSG00000102559 ENSMUST00000195411 Gm37570 TEC Interval_174064 chrX 134058715 134060076 + 0 NA promoter-TSS (ENSMUSG00000031256.11) protein_coding-promoter-TSS (ENSMUSG00000031256.11) -3002 ENSMUSG00000031256.11 ENSMUSG00000031256 ENSMUST00000136510 Cstf2 protein_coding Interval_160769 chr8 112051481 112052447 + 0 NA Intergenic Intergenic -10541 ENSMUSG00000065700.1 ENSMUSG00000065700 ENSMUST00000083766 Gm22827 snRNA Interval_113280 chr4 53057898 53060328 + 0 NA intron (ENSMUSG00000015243.4, intron 34 of 49) protein_coding-intron (ENSMUSG00000015243.4, intron 34 of 49) -18187 ENSMUSG00000015243.4 ENSMUSG00000015243 ENSMUST00000149127 Abca1 protein_coding Interval_100938 chr2 173497518 173497684 + 0 NA Intergenic Intergenic -24985 ENSMUSG00000027518.3 ENSMUSG00000027518 ENSMUST00000029023 1700021F07Rik protein_coding Interval_102101 chr3 17383413 17383601 + 0 NA Intergenic Intergenic -12372 ENSMUSG00000102646.1 ENSMUSG00000102646 ENSMUST00000192364 Gm19694 processed_pseudogene Interval_47106 chr13 75807707 75808271 + 0 NA Intergenic Intergenic 5283 ENSMUSG00000113409.1 ENSMUSG00000113409 ENSMUST00000223406 Gm8288 processed_pseudogene Interval_170825 chr9 110997332 110997941 + 0 NA intron (ENSMUSG00000057802.8, intron 2 of 6) processed_transcript-intron (ENSMUSG00000057802.8, intron 2 of 6) -7923 ENSMUSG00000066319.6 ENSMUSG00000066319 ENSMUST00000198702 Rtp3 protein_coding Interval_110374 chr3 157546343 157546552 + 0 NA intron (ENSMUSG00000028180.18, intron 10 of 10) protein_coding-intron (ENSMUSG00000028180.18, intron 9 of 9) 2168 ENSMUSG00000065431.1 ENSMUSG00000065431 ENSMUST00000083497 Mir186 miRNA Interval_137488 chr6 72724597 72725446 + 0 NA intron (ENSMUSG00000055799.13, intron 2 of 5) protein_coding-intron (ENSMUSG00000055799.13, intron 3 of 11) 25807 ENSMUSG00000079524.2 ENSMUSG00000079524 ENSMUST00000114051 Gm15402 antisense Interval_163763 chr9 25420138 25420562 + 0 NA Intergenic Intergenic -30112 ENSMUSG00000111600.1 ENSMUSG00000111600 ENSMUST00000214336 Gm8049 processed_pseudogene Interval_148085 chr7 79133229 79133611 + 0 NA TTS (ENSMUSG00000030605.15) protein_coding-TTS (ENSMUSG00000030605.15) -4741 ENSMUSG00000030606.8 ENSMUSG00000030606 ENSMUST00000206402 Hapln3 protein_coding Interval_141265 chr6 126701647 126702730 + 0 NA Intergenic Intergenic -16496 ENSMUSG00000097596.1 ENSMUSG00000097596 ENSMUST00000181126 Gm26673 antisense Interval_80259 chr18 38584825 38585079 + 0 NA Intergenic Intergenic 2102 ENSMUSG00000118296.1 ENSMUSG00000118296 ENSMUST00000236625 Gm19100 processed_pseudogene Interval_173229 chrX 74480557 74481337 + 0 NA intron (ENSMUSG00000079536.1, intron 1 of 2) protein_coding-intron (ENSMUSG00000079536.1, intron 1 of 2) 452 ENSMUSG00000079536.1 ENSMUSG00000079536 ENSMUST00000114125 Ctag2l1 protein_coding Interval_34732 chr12 9021285 9021744 + 0 NA intron (ENSMUSG00000066643.12, intron 22 of 22) protein_coding-intron (ENSMUSG00000066643.12, intron 22 of 27) -8513 ENSMUSG00000066637.2 ENSMUSG00000066637 ENSMUST00000219470 Ttc32 protein_coding Interval_143027 chr6 148655204 148655920 + 0 NA Intergenic Intergenic -12902 ENSMUSG00000065269.1 ENSMUSG00000065269 ENSMUST00000083335 Gm23456 snoRNA Interval_4940 chr1 82826436 82827308 + 0 NA Intergenic Intergenic -4011 ENSMUSG00000100744.1 ENSMUSG00000100744 ENSMUST00000185925 Gm17764 processed_pseudogene Interval_34252 chr11 121630351 121630918 + 0 NA intron (ENSMUSG00000046605.14, intron 7 of 12) protein_coding-intron (ENSMUSG00000046605.14, intron 7 of 8) 32318 ENSMUSG00000039230.14 ENSMUSG00000039230 ENSMUST00000151666 Tbcd protein_coding Interval_103086 chr3 35149252 35149551 + 0 NA Intergenic Intergenic 126730 ENSMUSG00000105651.1 ENSMUSG00000105651 ENSMUST00000198307 1700017M07Rik lincRNA Interval_64691 chr16 14221619 14221997 + 0 NA exon (ENSMUSG00000018830.10, exon 20 of 41) protein_coding-exon (ENSMUSG00000018830.10, exon 20 of 41) 46681 ENSMUSG00000022678.16 ENSMUSG00000022678 ENSMUST00000149232 Nde1 protein_coding Interval_75008 chr17 59928721 59928947 + 0 NA intron (ENSMUSG00000117191.1, intron 4 of 5) lincRNA-intron (ENSMUSG00000117191.1, intron 4 of 5) 73617 ENSMUSG00000117191.1 ENSMUSG00000117191 ENSMUST00000233598 Gm49853 lincRNA Interval_173427 chrX 93290478 93290781 + 0 NA intron (ENSMUSG00000035277.15, intron 3 of 5) protein_coding-intron (ENSMUSG00000035277.15, intron 2 of 4) 4184 ENSMUSG00000035277.15 ENSMUSG00000035277 ENSMUST00000113947 Arx protein_coding Interval_64693 chr16 14230561 14230812 + 0 NA intron (ENSMUSG00000018830.10, intron 15 of 41) protein_coding-intron (ENSMUSG00000018830.10, intron 14 of 40) 55559 ENSMUSG00000022678.16 ENSMUSG00000022678 ENSMUST00000149232 Nde1 protein_coding Interval_155068 chr8 26110281 26110516 + 0 NA intron (ENSMUSG00000037234.17, intron 2 of 21) protein_coding-intron (ENSMUSG00000037234.17, intron 2 of 21) -8990 ENSMUSG00000013878.18 ENSMUSG00000013878 ENSMUST00000124867 Rnf170 protein_coding Interval_62971 chr15 98378126 98378567 + 0 NA exon (ENSMUSG00000056184.5, exon 1 of 1) protein_coding-exon (ENSMUSG00000056184.5, exon 1 of 1) 2600 ENSMUSG00000056184.5 ENSMUSG00000056184 ENSMUST00000057386 Olfr283 protein_coding Interval_53292 chr14 55834872 55835827 + 0 NA Intergenic Intergenic 5880 ENSMUSG00000023411.12 ENSMUSG00000023411 ENSMUST00000226869 Nfatc4 protein_coding Interval_6962 chr1 121418950 121420616 + 0 NA Intergenic Intergenic -11292 ENSMUSG00000026339.18 ENSMUSG00000026339 ENSMUST00000152959 Ccdc93 protein_coding Interval_33752 chr11 118266342 118266777 + 0 NA promoter-TSS (ENSMUSG00000033909.17) protein_coding-promoter-TSS (ENSMUSG00000033909.17) 23513 ENSMUSG00000033909.17 ENSMUSG00000033909 ENSMUST00000151433 Usp36 protein_coding Interval_24781 chr11 37443641 37444748 + 0 NA Intergenic Intergenic -214795 ENSMUSG00000087388.1 ENSMUSG00000087388 ENSMUST00000131013 Gm12128 lincRNA Interval_157943 chr8 76919267 76920059 + 0 NA intron (ENSMUSG00000031618.13, intron 2 of 6) protein_coding-intron (ENSMUSG00000031618.13, intron 1 of 7) 17375 ENSMUSG00000031618.13 ENSMUSG00000031618 ENSMUST00000126697 Nr3c2 protein_coding Interval_129818 chr5 122518781 122519511 + 0 NA Intergenic Intergenic 12357 ENSMUSG00000088583.1 ENSMUSG00000088583 ENSMUST00000157958 Gm22965 snRNA Interval_102034 chr3 15346892 15347692 + 0 NA Intergenic Intergenic -14990 ENSMUSG00000078783.1 ENSMUSG00000078783 ENSMUST00000108361 Gm9733 protein_coding Interval_13615 chr10 20196561 20197526 + 0 NA intron (ENSMUSG00000019996.17, intron 1 of 5) protein_coding-intron (ENSMUSG00000019996.17, intron 1 of 17) 4795 ENSMUSG00000110754.1 ENSMUSG00000110754 ENSMUST00000214323 4930405J17Rik antisense Interval_46854 chr13 72572741 72573029 + 0 NA Intergenic Intergenic 55679 ENSMUSG00000093587.3 ENSMUSG00000093587 ENSMUST00000177421 Gm20554 lincRNA Interval_118104 chr4 128973784 128975274 + 0 NA Intergenic Intergenic -12101 ENSMUSG00000028789.16 ENSMUSG00000028789 ENSMUST00000156739 Azin2 protein_coding Interval_87211 chr19 46929181 46929429 + 0 NA promoter-TSS (ENSMUSG00000025041.17) protein_coding-promoter-TSS (ENSMUSG00000025041.17) 33003 ENSMUSG00000025041.17 ENSMUSG00000025041 ENSMUST00000237658 Nt5c2 protein_coding Interval_149341 chr7 97563292 97564176 + 0 NA intron (ENSMUSG00000035642.16, intron 1 of 2) protein_coding-intron (ENSMUSG00000035642.16, intron 2 of 2) 14493 ENSMUSG00000035642.16 ENSMUSG00000035642 ENSMUST00000205430 Aamdc protein_coding Interval_126315 chr5 86502764 86503441 + 0 NA intron (ENSMUSG00000079451.9, intron 1 of 8) protein_coding-intron (ENSMUSG00000079451.9, intron 1 of 9) -12463 ENSMUSG00000079451.9 ENSMUSG00000079451 ENSMUST00000199703 Tmprss11g protein_coding Interval_94241 chr2 86182199 86182892 + 0 NA promoter-TSS (ENSMUSG00000075199.3) protein_coding-promoter-TSS (ENSMUSG00000075199.3) 3138 ENSMUSG00000075199.3 ENSMUSG00000075199 ENSMUST00000099905 Olfr52 protein_coding Interval_110559 chr4 3901456 3901745 + 0 NA exon (ENSMUSG00000003282.9, exon 6 of 6) protein_coding-exon (ENSMUSG00000003282.9, exon 6 of 6) -29495 ENSMUSG00000078365.5 ENSMUSG00000078365 ENSMUST00000105158 Mos protein_coding Interval_50693 chr14 18287571 18288189 + 0 NA intron (ENSMUSG00000021774.13, intron 3 of 5) protein_coding-intron (ENSMUSG00000021774.13, intron 3 of 5) 16616 ENSMUSG00000021772.15 ENSMUSG00000021772 ENSMUST00000156186 Nkiras1 protein_coding Interval_153034 chr7 140989012 140991710 + 0 NA Intergenic Intergenic 3152 ENSMUSG00000110355.1 ENSMUSG00000110355 ENSMUST00000209475 Gm7514 processed_pseudogene Interval_27969 chr11 71719008 71719242 + 0 NA Intergenic Intergenic -14781 ENSMUSG00000085659.2 ENSMUSG00000085659 ENSMUST00000135553 Gm12325 lincRNA Interval_78234 chr18 10527811 10528243 + 0 NA intron (ENSMUSG00000042942.18, intron 4 of 13) protein_coding-intron (ENSMUSG00000042942.18, intron 17 of 32) 23379 ENSMUSG00000084693.1 ENSMUSG00000084693 ENSMUST00000122744 Gm24894 snoRNA Interval_161522 chr8 120936276 120936727 + 0 NA intron (ENSMUSG00000092329.1, intron 1 of 15) protein_coding-intron (ENSMUSG00000092329.1, intron 1 of 15) 56295 ENSMUSG00000097087.1 ENSMUSG00000097087 ENSMUST00000181778 Gm26878 lincRNA Interval_43936 chr13 38155418 38155967 + 0 NA intron (ENSMUSG00000054889.10, intron 1 of 23) protein_coding-intron (ENSMUSG00000054889.10, intron 1 of 23) -3900 ENSMUSG00000103789.1 ENSMUSG00000103789 ENSMUST00000191991 Gm10129 TEC Interval_57506 chr15 11917919 11919353 + 0 NA Intergenic Intergenic 12117 ENSMUSG00000115240.1 ENSMUSG00000115240 ENSMUST00000227444 Gm5144 bidirectional_promoter_lncRNA Interval_172919 chrX 53897533 53897756 + 0 NA Intergenic Intergenic -13224 ENSMUSG00000080968.3 ENSMUSG00000080968 ENSMUST00000120608 Atf1-ps processed_pseudogene Interval_119219 chr4 136273112 136273503 + 0 NA intron (ENSMUSG00000001604.14, intron 9 of 10) protein_coding-intron (ENSMUSG00000001604.14, intron 9 of 10) -11376 ENSMUSG00000051351.14 ENSMUSG00000051351 ENSMUST00000130658 Zfp46 protein_coding Interval_13354 chr10 16820318 16821066 + 0 NA Intergenic Intergenic 23719 ENSMUSG00000112499.1 ENSMUSG00000112499 ENSMUST00000220087 Gm47736 processed_pseudogene Interval_113018 chr4 46915432 46915654 + 0 NA intron (ENSMUSG00000039809.10, intron 1 of 18) protein_coding-intron (ENSMUSG00000039809.10, intron 1 of 18) -55641 ENSMUSG00000039809.10 ENSMUSG00000039809 ENSMUST00000206773 Gabbr2 protein_coding Interval_173262 chrX 75739545 75741467 + 0 NA intron (ENSMUSG00000087396.7, intron 3 of 4) processed_transcript-intron (ENSMUSG00000087396.7, intron 2 of 3) 16834 ENSMUSG00000081996.1 ENSMUSG00000081996 ENSMUST00000117092 Gm7153 processed_pseudogene Interval_79179 chr18 25476701 25477037 + 0 NA TTS (ENSMUSG00000024268.16) protein_coding-TTS (ENSMUSG00000024268.16) 24370 ENSMUSG00000024268.16 ENSMUSG00000024268 ENSMUST00000224143 Celf4 protein_coding Interval_9266 chr1 155669514 155669989 + 0 NA intron (ENSMUSG00000033701.13, intron 6 of 7) protein_coding-intron (ENSMUSG00000033701.13, intron 6 of 7) 81933 ENSMUSG00000026468.14 ENSMUSG00000026468 ENSMUST00000195275 Lhx4 protein_coding Interval_12592 chr10 3729083 3730605 + 0 NA Intergenic Intergenic -105035 ENSMUSG00000040624.18 ENSMUSG00000040624 ENSMUST00000141367 Plekhg1 protein_coding Interval_115522 chr4 100116601 100116835 + 0 NA intron (ENSMUSG00000035305.5, intron 1 of 8) protein_coding-intron (ENSMUSG00000035305.5, intron 1 of 8) -2903 ENSMUSG00000086385.1 ENSMUSG00000086385 ENSMUST00000134206 Gm12701 sense_intronic Interval_15863 chr10 58530623 58532772 + 0 NA intron (ENSMUSG00000038010.9, intron 10 of 15) protein_coding-intron (ENSMUSG00000038010.9, intron 10 of 15) -23570 ENSMUSG00000112670.1 ENSMUSG00000112670 ENSMUST00000219887 Gm18042 processed_pseudogene Interval_173089 chrX 71311020 71311776 + 0 NA intron (ENSMUSG00000031337.16, intron 14 of 14) protein_coding-intron (ENSMUSG00000031337.16, intron 13 of 13) -58414 ENSMUSG00000015214.14 ENSMUSG00000015214 ENSMUST00000130179 Mtmr1 protein_coding Interval_83303 chr18 84012994 84013906 + 0 NA exon (ENSMUSG00000046982.11, exon 2 of 2) protein_coding-exon (ENSMUSG00000046982.11, exon 2 of 2) 25455 ENSMUSG00000117894.1 ENSMUSG00000117894 ENSMUST00000238017 Gm50421 processed_pseudogene Interval_33996 chr11 119904795 119905491 + 0 NA Intergenic Intergenic -8872 ENSMUSG00000025371.12 ENSMUSG00000025371 ENSMUST00000137055 Chmp6 protein_coding Interval_69686 chr16 95550387 95551253 + 0 NA intron (ENSMUSG00000040732.20, intron 1 of 10) protein_coding-intron (ENSMUSG00000040732.20, intron 1 of 10) -20455 ENSMUSG00000040732.20 ENSMUSG00000040732 ENSMUST00000121809 Erg protein_coding Interval_165382 chr9 46968391 46969432 + 0 NA intron (ENSMUSG00000111482.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000111482.1, intron 1 of 1) 10142 ENSMUSG00000111482.1 ENSMUSG00000111482 ENSMUST00000214437 Gm47153 lincRNA Interval_23303 chr11 21265847 21266463 + 0 NA intron (ENSMUSG00000020128.15, intron 3 of 22) protein_coding-intron (ENSMUSG00000020128.15, intron 3 of 22) 14069 ENSMUSG00000081868.1 ENSMUSG00000081868 ENSMUST00000118219 Gm12039 processed_pseudogene Interval_59402 chr15 52314139 52314668 + 0 NA intron (ENSMUSG00000022315.3, intron 2 of 7) protein_coding-intron (ENSMUSG00000022315.3, intron 2 of 7) 18850 ENSMUSG00000022315.3 ENSMUSG00000022315 ENSMUST00000037240 Slc30a8 protein_coding Interval_69988 chr17 4034810 4035270 + 0 NA Intergenic Intergenic 47955 ENSMUSG00000116975.1 ENSMUSG00000116975 ENSMUST00000231647 4930470H14Rik lincRNA Interval_14502 chr10 34417954 34419161 + 0 NA promoter-TSS (ENSMUSG00000039480.14) protein_coding-promoter-TSS (ENSMUSG00000039480.14) -89 ENSMUSG00000039480.14 ENSMUSG00000039480 ENSMUST00000099973 Nt5dc1 protein_coding Interval_112276 chr4 39694820 39695732 + 0 NA Intergenic Intergenic -72342 ENSMUSG00000082302.1 ENSMUSG00000082302 ENSMUST00000117439 Gm12385 processed_pseudogene Interval_134818 chr6 31821272 31822633 + 0 NA intron (ENSMUSG00000087379.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000087379.1, intron 1 of 2) 35277 ENSMUSG00000087379.1 ENSMUSG00000087379 ENSMUST00000153328 Gm13849 lincRNA Interval_157864 chr8 75057061 75057303 + 0 NA exon (ENSMUSG00000042870.15, exon 8 of 16) protein_coding-exon (ENSMUSG00000042870.15, exon 8 of 16) -11936 ENSMUSG00000110433.1 ENSMUSG00000110433 ENSMUST00000212068 Gm45820 antisense Interval_100305 chr2 168289830 168290455 + 0 NA intron (ENSMUSG00000086783.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000086783.1, intron 1 of 1) 4979 ENSMUSG00000086783.1 ENSMUSG00000086783 ENSMUST00000148309 Gm14262 lincRNA Interval_171531 chr9 119055342 119056311 + 0 NA intron (ENSMUSG00000038775.14, intron 1 of 3) protein_coding-intron (ENSMUSG00000038775.14, intron 1 of 19) -7629 ENSMUSG00000038775.14 ENSMUSG00000038775 ENSMUST00000151638 Vill protein_coding Interval_45781 chr13 58035172 58036248 + 0 NA intron (ENSMUSG00000014164.15, intron 6 of 14) protein_coding-intron (ENSMUSG00000014164.15, intron 8 of 16) -12510 ENSMUSG00000077962.1 ENSMUSG00000077962 ENSMUST00000104769 Mir874 miRNA Interval_171387 chr9 117261394 117261602 + 0 NA intron (ENSMUSG00000039607.17, intron 3 of 15) protein_coding-intron (ENSMUSG00000039607.17, intron 2 of 14) 8962 ENSMUSG00000079669.2 ENSMUSG00000079669 ENSMUST00000172075 Gm17396 processed_transcript Interval_99918 chr2 165807783 165810452 + 0 NA intron (ENSMUSG00000039671.18, intron 14 of 22) protein_coding-intron (ENSMUSG00000039671.18, intron 15 of 23) -48567 ENSMUSG00000085274.1 ENSMUSG00000085274 ENSMUST00000155786 BC046401 processed_transcript Interval_78544 chr18 14619878 14621383 + 0 NA Intergenic Intergenic 16776 ENSMUSG00000037013.17 ENSMUSG00000037013 ENSMUST00000234544 Ss18 protein_coding Interval_106845 chr3 101279583 101282563 + 0 NA promoter-TSS (ENSMUSG00000027863.8) protein_coding-promoter-TSS (ENSMUSG00000027863.8) -684 ENSMUSG00000027863.8 ENSMUSG00000027863 ENSMUST00000152321 Cd2 protein_coding Interval_8948 chr1 152640422 152640736 + 0 NA intron (ENSMUSG00000026482.13, intron 2 of 18) protein_coding-intron (ENSMUSG00000026482.13, intron 2 of 17) 46922 ENSMUSG00000086145.1 ENSMUSG00000086145 ENSMUST00000139309 Gm15479 sense_intronic Interval_125440 chr5 67155473 67155996 + 0 NA Intergenic Intergenic 28231 ENSMUSG00000106995.1 ENSMUSG00000106995 ENSMUST00000201933 Gm33167 TEC Interval_159349 chr8 93971375 93971692 + 0 NA TTS (ENSMUSG00000031751.14) protein_coding-TTS (ENSMUSG00000031751.14) 5737 ENSMUSG00000031748.16 ENSMUSG00000031748 ENSMUST00000212008 Gnao1 protein_coding Interval_21997 chr11 5687955 5688612 + 0 NA intron (ENSMUSG00000020481.15, intron 26 of 26) protein_coding-intron (ENSMUSG00000020481.15, intron 26 of 26) -9651 ENSMUSG00000081691.1 ENSMUSG00000081691 ENSMUST00000122017 Gm11965 processed_pseudogene Interval_158455 chr8 83818401 83820083 + 0 NA Intergenic Intergenic 66324 ENSMUSG00000084682.1 ENSMUSG00000084682 ENSMUST00000122733 Gm22024 misc_RNA Interval_81804 chr18 64903559 64903925 + 0 NA intron (ENSMUSG00000024589.18, intron 1 of 30) protein_coding-intron (ENSMUSG00000024589.18, intron 1 of 29) -15251 ENSMUSG00000114210.2 ENSMUSG00000114210 ENSMUST00000224731 A330084C13Rik antisense Interval_56620 chr14 120892589 120892879 + 0 NA Intergenic Intergenic -23113 ENSMUSG00000030662.10 ENSMUSG00000030662 ENSMUST00000228277 Ipo5 protein_coding Interval_133651 chr6 8066139 8066594 + 0 NA intron (ENSMUSG00000068794.7, intron 25 of 34) protein_coding-intron (ENSMUSG00000068794.7, intron 25 of 34) -82983 ENSMUSG00000096403.2 ENSMUSG00000096403 ENSMUST00000178598 Rnps1-ps processed_pseudogene Interval_88843 chr2 11583964 11584236 + 0 NA Intergenic Intergenic 6758 ENSMUSG00000037197.11 ENSMUSG00000037197 ENSMUST00000156469 Rbm17 protein_coding Interval_70181 chr17 5997657 5998583 + 0 NA intron (ENSMUSG00000023805.17, intron 3 of 16) protein_coding-intron (ENSMUSG00000023805.17, intron 4 of 25) -9914 ENSMUSG00000023805.17 ENSMUSG00000023805 ENSMUST00000126881 Synj2 protein_coding Interval_144204 chr7 19937149 19938079 + 0 NA TTS (ENSMUSG00000040498.7) protein_coding-TTS (ENSMUSG00000040498.7) 11958 ENSMUSG00000109281.1 ENSMUSG00000109281 ENSMUST00000207343 Gm44651 processed_pseudogene Interval_63385 chr15 100746673 100747902 + 0 NA Intergenic Intergenic -14550 ENSMUSG00000116504.1 ENSMUSG00000116504 ENSMUST00000230334 I730030J21Rik processed_transcript Interval_167575 chr9 70555351 70556251 + 0 NA intron (ENSMUSG00000032212.10, intron 2 of 19) protein_coding-intron (ENSMUSG00000032212.10, intron 2 of 20) 12921 ENSMUSG00000032212.10 ENSMUSG00000032212 ENSMUST00000216881 Sltm protein_coding Interval_50310 chr14 11775082 11775749 + 0 NA intron (ENSMUSG00000021745.14, intron 2 of 3) protein_coding-intron (ENSMUSG00000021745.14, intron 2 of 29) 7472 ENSMUSG00000114310.1 ENSMUSG00000114310 ENSMUST00000225152 Gm48602 TEC Interval_36023 chr12 33369334 33369784 + 0 NA intron (ENSMUSG00000020564.17, intron 8 of 8) protein_coding-intron (ENSMUSG00000020564.17, intron 10 of 11) 25201 ENSMUSG00000085664.1 ENSMUSG00000085664 ENSMUST00000138617 Atxn7l1os2 antisense Interval_57317 chr15 8709627 8711029 + 0 NA promoter-TSS (ENSMUSG00000005360.14) protein_coding-promoter-TSS (ENSMUSG00000005360.14) 81 ENSMUSG00000005360.14 ENSMUSG00000005360 ENSMUST00000126747 Slc1a3 protein_coding Interval_95809 chr2 116790927 116791204 + 0 NA Intergenic Intergenic 86103 ENSMUSG00000086462.1 ENSMUSG00000086462 ENSMUST00000151391 Gm13990 antisense Interval_80700 chr18 46465046 46466087 + 0 NA exon (ENSMUSG00000046487.6, exon 1 of 1) processed_pseudogene-exon (ENSMUSG00000046487.6, exon 1 of 1) 224 ENSMUSG00000046487.6 ENSMUSG00000046487 ENSMUST00000180618 Mospd4 processed_pseudogene Interval_96441 chr2 122776554 122776841 + 0 NA intron (ENSMUSG00000005803.14, intron 1 of 5) protein_coding-intron (ENSMUSG00000005803.14, intron 1 of 9) 4979 ENSMUSG00000005803.14 ENSMUSG00000005803 ENSMUST00000176343 Sqor protein_coding Interval_157547 chr8 71358112 71359696 + 0 NA intron (ENSMUSG00000004677.17, intron 17 of 18) protein_coding-intron (ENSMUSG00000004677.17, intron 37 of 39) -8313 ENSMUSG00000002395.14 ENSMUSG00000002395 ENSMUST00000137137 Use1 protein_coding Interval_49515 chr13 112616499 112617323 + 0 NA intron (ENSMUSG00000021758.14, intron 15 of 21) protein_coding-intron (ENSMUSG00000021758.14, intron 14 of 20) -21827 ENSMUSG00000114547.1 ENSMUSG00000114547 ENSMUST00000225150 Gm3226 processed_pseudogene Interval_168696 chr9 86011992 86012304 + 0 NA Intergenic Intergenic -68948 ENSMUSG00000110946.1 ENSMUSG00000110946 ENSMUST00000213921 Gm47604 lincRNA Interval_100028 chr2 166611440 166612011 + 0 NA exon (ENSMUSG00000039621.13, exon 9 of 40) protein_coding-exon (ENSMUSG00000039621.13, exon 9 of 40) 43417 ENSMUSG00000093063.1 ENSMUSG00000093063 ENSMUST00000175322 Gm23152 rRNA Interval_29255 chr11 82317858 82318763 + 0 NA Intergenic Intergenic -12620 ENSMUSG00000020702.13 ENSMUSG00000020702 ENSMUST00000021043 Ccl1 protein_coding Interval_127619 chr5 105830863 105831136 + 0 NA intron (ENSMUSG00000046079.16, intron 2 of 2) protein_coding-intron (ENSMUSG00000046079.16, intron 5 of 5) -12011 ENSMUSG00000084878.1 ENSMUSG00000084878 ENSMUST00000135958 Lrrc8dos antisense Interval_3133 chr1 53852418 53852657 + 0 NA intron (ENSMUSG00000042807.15, intron 3 of 5) protein_coding-intron (ENSMUSG00000042807.15, intron 20 of 28) 3113 ENSMUSG00000098443.1 ENSMUSG00000098443 ENSMUST00000184834 Mir7681 miRNA Interval_157050 chr8 64788235 64788983 + 0 NA intron (ENSMUSG00000031605.8, intron 4 of 13) protein_coding-intron (ENSMUSG00000031605.8, intron 4 of 14) 20529 ENSMUSG00000109879.1 ENSMUSG00000109879 ENSMUST00000210294 Gm10997 TEC Interval_139357 chr6 99378722 99379966 + 0 NA intron (ENSMUSG00000030067.17, intron 2 of 3) protein_coding-intron (ENSMUSG00000030067.17, intron 1 of 18) 9155 ENSMUSG00000093559.1 ENSMUSG00000093559 ENSMUST00000177278 Gm20705 sense_intronic Interval_141447 chr6 128333443 128336035 + 0 NA intron (ENSMUSG00000001521.12, intron 2 of 3) protein_coding-intron (ENSMUSG00000001521.12, intron 2 of 10) 10236 ENSMUSG00000001521.12 ENSMUSG00000001521 ENSMUST00000157005 Tulp3 protein_coding Interval_71380 chr17 22846318 22846763 + 0 NA TTS (ENSMUSG00000059142.16) protein_coding-TTS (ENSMUSG00000059142.16) 20594 ENSMUSG00000059142.16 ENSMUSG00000059142 ENSMUST00000127557 Zfp945 protein_coding Interval_107615 chr3 108898568 108900139 + 0 NA Intergenic Intergenic -9647 ENSMUSG00000045326.13 ENSMUSG00000045326 ENSMUST00000139137 Fndc7 protein_coding Interval_173991 chrX 126269302 126270199 + 0 NA Intergenic Intergenic -30245 ENSMUSG00000081736.1 ENSMUSG00000081736 ENSMUST00000117980 Gm14971 processed_pseudogene Interval_17302 chr10 75704105 75704301 + 0 NA intron (ENSMUSG00000020196.10, intron 2 of 3) protein_coding-intron (ENSMUSG00000020196.10, intron 26 of 36) 28417 ENSMUSG00000020196.10 ENSMUSG00000020196 ENSMUST00000218480 Cabin1 protein_coding Interval_129756 chr5 122145119 122147277 + 0 NA Intergenic Intergenic -12395 ENSMUSG00000004455.16 ENSMUSG00000004455 ENSMUST00000134719 Ppp1cc protein_coding Interval_53419 chr14 57284880 57285154 + 0 NA intron (ENSMUSG00000021947.11, intron 6 of 7) protein_coding-intron (ENSMUSG00000021947.11, intron 6 of 7) 48468 ENSMUSG00000077497.1 ENSMUSG00000077497 ENSMUST00000104309 Gm23593 snoRNA Interval_136996 chr6 65816502 65816787 + 0 NA intron (ENSMUSG00000029913.14, intron 2 of 2) protein_coding-intron (ENSMUSG00000029913.14, intron 2 of 10) -37395 ENSMUSG00000085689.1 ENSMUSG00000085689 ENSMUST00000144594 Gm16838 antisense Interval_111832 chr4 31655581 31656857 + 0 NA Intergenic Intergenic 275747 ENSMUSG00000082254.1 ENSMUSG00000082254 ENSMUST00000118967 Gm11922 processed_pseudogene Interval_54732 chr14 73937960 73938378 + 0 NA intron (ENSMUSG00000115289.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000115289.1, intron 3 of 3) 5142 ENSMUSG00000115470.1 ENSMUSG00000115470 ENSMUST00000228234 Gm18683 processed_pseudogene Interval_120464 chr4 148792001 148792539 + 0 NA Intergenic Intergenic 78567 ENSMUSG00000087273.1 ENSMUSG00000087273 ENSMUST00000139895 Gm13203 lincRNA Interval_54145 chr14 65677630 65677898 + 0 NA intron (ENSMUSG00000022032.14, intron 1 of 7) protein_coding-intron (ENSMUSG00000022032.14, intron 2 of 8) 1287 ENSMUSG00000022032.14 ENSMUSG00000022032 ENSMUST00000154373 Scara5 protein_coding Interval_21538 chr10 129364393 129364598 + 0 NA Intergenic Intergenic -12466 ENSMUSG00000107790.1 ENSMUSG00000107790 ENSMUST00000205105 Olfr783-ps1 unprocessed_pseudogene Interval_127923 chr5 109136896 109137099 + 0 NA Intergenic Intergenic -39047 ENSMUSG00000090688.2 ENSMUSG00000090688 ENSMUST00000095922 Vmn2r12 protein_coding Interval_115537 chr4 100399119 100399332 + 0 NA intron (ENSMUSG00000035305.5, intron 4 of 8) protein_coding-intron (ENSMUSG00000035305.5, intron 4 of 8) -37166 ENSMUSG00000080967.1 ENSMUSG00000080967 ENSMUST00000121588 Gm12706 processed_pseudogene Interval_24623 chr11 35356361 35356921 + 0 NA intron (ENSMUSG00000056427.10, intron 2 of 3) protein_coding-intron (ENSMUSG00000056427.10, intron 4 of 35) 6572 ENSMUSG00000086311.1 ENSMUSG00000086311 ENSMUST00000124503 Gm12122 sense_intronic Interval_132357 chr5 144441474 144441957 + 0 NA intron (ENSMUSG00000047843.16, intron 3 of 3) protein_coding-intron (ENSMUSG00000047843.16, intron 3 of 3) 35113 ENSMUSG00000083574.1 ENSMUSG00000083574 ENSMUST00000118354 Gm15709 processed_pseudogene Interval_104152 chr3 59130852 59131423 + 0 NA promoter-TSS (ENSMUSG00000036381.13) protein_coding-promoter-TSS (ENSMUSG00000036381.13) 1325 ENSMUSG00000036381.13 ENSMUSG00000036381 ENSMUST00000196716 P2ry14 protein_coding Interval_9363 chr1 156591195 156591817 + 0 NA intron (ENSMUSG00000026596.13, intron 1 of 2) protein_coding-intron (ENSMUSG00000026596.13, intron 1 of 11) 8398 ENSMUSG00000104293.1 ENSMUSG00000104293 ENSMUST00000195501 Gm38043 TEC Interval_142028 chr6 136611620 136612768 + 0 NA exon (ENSMUSG00000030214.7, exon 11 of 11) protein_coding-exon (ENSMUSG00000030214.7, exon 11 of 11) -8438 ENSMUSG00000107760.1 ENSMUSG00000107760 ENSMUST00000204462 Gm44401 TEC Interval_10438 chr1 170871117 170872249 + 0 NA intron (ENSMUSG00000053925.4, intron 1 of 1) processed_transcript-intron (ENSMUSG00000053925.4, intron 1 of 1) 3038 ENSMUSG00000053925.4 ENSMUSG00000053925 ENSMUST00000171747 Gm9929 processed_transcript Interval_34290 chr12 3119949 3120156 + 0 NA Intergenic Intergenic 37385 ENSMUSG00000092168.1 ENSMUSG00000092168 ENSMUST00000168738 Gm9075 unprocessed_pseudogene Interval_158532 chr8 84291651 84291888 + 0 NA Intergenic Intergenic 11964 ENSMUSG00000109653.1 ENSMUSG00000109653 ENSMUST00000210948 Gm45608 processed_pseudogene Interval_117658 chr4 125354401 125354969 + 0 NA Intergenic Intergenic 126088 ENSMUSG00000087010.1 ENSMUSG00000087010 ENSMUST00000130055 1700041M05Rik lincRNA Interval_18149 chr10 83027402 83027675 + 0 NA TTS (ENSMUSG00000112084.1) TEC-TTS (ENSMUSG00000112084.1) 4157 ENSMUSG00000112084.1 ENSMUSG00000112084 ENSMUST00000218071 Gm10773 TEC Interval_100883 chr2 173096593 173097563 + 0 NA intron (ENSMUSG00000070495.11, intron 9 of 11) protein_coding-intron (ENSMUSG00000070495.11, intron 9 of 10) 22447 ENSMUSG00000070495.11 ENSMUSG00000070495 ENSMUST00000179693 Ctcfl protein_coding Interval_65262 chr16 21015938 21016694 + 0 NA Intergenic Intergenic -5012 ENSMUSG00000116592.1 ENSMUSG00000116592 ENSMUST00000231537 Gm18770 processed_pseudogene Interval_27406 chr11 67400656 67400904 + 0 NA Intergenic Intergenic 35995 ENSMUSG00000060180.12 ENSMUSG00000060180 ENSMUST00000181027 Myh13 protein_coding Interval_112595 chr4 43467294 43467812 + 0 NA Intergenic Intergenic -13230 ENSMUSG00000028459.11 ENSMUSG00000028459 ENSMUST00000141198 Cd72 protein_coding Interval_51410 chr14 27315935 27316144 + 0 NA intron (ENSMUSG00000021895.10, intron 5 of 13) protein_coding-intron (ENSMUSG00000021895.10, intron 2 of 10) 64811 ENSMUSG00000093034.1 ENSMUSG00000093034 ENSMUST00000175293 Gm23633 miRNA Interval_40302 chr12 103348309 103348772 + 0 NA TTS (ENSMUSG00000090185.1) antisense-TTS (ENSMUSG00000090185.1) -10167 ENSMUSG00000021200.14 ENSMUSG00000021200 ENSMUST00000135694 Asb2 protein_coding Interval_82706 chr18 76089965 76090596 + 0 NA intron (ENSMUSG00000044646.15, intron 1 of 2) protein_coding-intron (ENSMUSG00000044646.15, intron 3 of 4) 8191 ENSMUSG00000117797.1 ENSMUSG00000117797 ENSMUST00000236092 2900057B20Rik antisense Interval_173057 chrX 68893185 68893363 + 0 NA promoter-TSS (ENSMUSG00000056815.1) protein_coding-promoter-TSS (ENSMUSG00000056815.1) -221 ENSMUSG00000056815.1 ENSMUSG00000056815 ENSMUST00000074894 Gm6812 protein_coding Interval_2875 chr1 47116426 47117335 + 0 NA Intergenic Intergenic -36581 ENSMUSG00000101447.1 ENSMUSG00000101447 ENSMUST00000190006 Gm28826 lincRNA Interval_37365 chr12 65502073 65502803 + 0 NA Intergenic Intergenic -27814 ENSMUSG00000088441.1 ENSMUSG00000088441 ENSMUST00000157816 Gm25599 snRNA Interval_60422 chr15 73652289 73653495 + 0 NA TTS (ENSMUSG00000099958.1) processed_transcript-TTS (ENSMUSG00000099958.1) 7040 ENSMUSG00000099958.1 ENSMUSG00000099958 ENSMUST00000188278 1700010B13Rik processed_transcript Interval_91633 chr2 45037352 45038590 + 0 NA intron (ENSMUSG00000026872.18, intron 2 of 3) protein_coding-intron (ENSMUSG00000026872.18, intron 2 of 9) -14794 ENSMUSG00000092679.1 ENSMUSG00000092679 ENSMUST00000174938 Mir5129 miRNA Interval_46579 chr13 67344937 67345479 + 0 NA TTS (ENSMUSG00000098692.1) protein_coding-TTS (ENSMUSG00000098692.1) 2665 ENSMUSG00000098781.1 ENSMUSG00000098781 ENSMUST00000170543 Gm28044 protein_coding Interval_121924 chr5 9724651 9726325 + 0 NA promoter-TSS (ENSMUSG00000003974.6) protein_coding-promoter-TSS (ENSMUSG00000003974.6) -318 ENSMUSG00000003974.6 ENSMUSG00000003974 ENSMUST00000004076 Grm3 protein_coding Interval_93778 chr2 76814238 76814611 + 0 NA TTS (ENSMUSG00000051747.15) protein_coding-TTS (ENSMUSG00000051747.15) 22390 ENSMUSG00000051747.15 ENSMUSG00000051747 ENSMUST00000147048 Ttn protein_coding Interval_23991 chr11 29215977 29216458 + 0 NA intron (ENSMUSG00000020463.15, intron 1 of 2) protein_coding-intron (ENSMUSG00000020463.15, intron 15 of 15) 30851 ENSMUSG00000020462.14 ENSMUSG00000020462 ENSMUST00000127940 Cfap36 protein_coding Interval_109428 chr3 142290128 142291297 + 0 NA intron (ENSMUSG00000028273.15, intron 6 of 14) protein_coding-intron (ENSMUSG00000028273.15, intron 7 of 12) 13267 ENSMUSG00000028273.15 ENSMUSG00000028273 ENSMUST00000058626 Pdlim5 protein_coding Interval_64544 chr16 13198982 13199360 + 0 NA Intergenic Intergenic 66780 ENSMUSG00000022545.13 ENSMUSG00000022545 ENSMUST00000156393 Ercc4 protein_coding Interval_24116 chr11 30477977 30478220 + 0 NA Intergenic Intergenic -6271 ENSMUSG00000040919.13 ENSMUSG00000040919 ENSMUST00000152718 4930505A04Rik protein_coding Interval_100914 chr2 173314505 173315042 + 0 NA Intergenic Intergenic 38075 ENSMUSG00000087600.1 ENSMUSG00000087600 ENSMUST00000150185 Pmepa1os antisense Interval_106986 chr3 102521224 102521492 + 0 NA TTS (ENSMUSG00000027859.10) protein_coding-TTS (ENSMUSG00000027859.10) 30016 ENSMUSG00000106121.1 ENSMUSG00000106121 ENSMUST00000197086 Gm42679 sense_intronic Interval_20874 chr10 121662621 121663551 + 0 NA intron (ENSMUSG00000047642.15, intron 3 of 10) protein_coding-intron (ENSMUSG00000047642.15, intron 3 of 12) 21498 ENSMUSG00000047642.15 ENSMUSG00000047642 ENSMUST00000132744 D930020B18Rik protein_coding Interval_57869 chr15 23738175 23738690 + 0 NA Intergenic Intergenic -8779 ENSMUSG00000115129.1 ENSMUSG00000115129 ENSMUST00000228912 Gm48916 TEC Interval_137113 chr6 67531230 67531856 + 0 NA promoter-TSS (ENSMUSG00000105650.1) lincRNA-promoter-TSS (ENSMUSG00000105650.1) -946 ENSMUSG00000105650.1 ENSMUSG00000105650 ENSMUST00000199480 Gm42889 lincRNA Interval_34979 chr12 16259955 16260149 + 0 NA intron (ENSMUSG00000113586.1, intron 4 of 5) lincRNA-intron (ENSMUSG00000113586.1, intron 4 of 5) -27825 ENSMUSG00000113892.1 ENSMUSG00000113892 ENSMUST00000220475 Gm48605 lincRNA Interval_104962 chr3 79299550 79300127 + 0 NA Intergenic Intergenic 12446 ENSMUSG00000102545.1 ENSMUSG00000102545 ENSMUST00000192562 6430573P05Rik lincRNA Interval_68013 chr16 63668999 63670146 + 0 NA intron (ENSMUSG00000052504.7, intron 2 of 5) protein_coding-intron (ENSMUSG00000052504.7, intron 3 of 16) 77962 ENSMUSG00000088992.1 ENSMUSG00000088992 ENSMUST00000158367 Gm22769 snRNA Interval_103869 chr3 53888010 53888346 + 0 NA Intergenic Intergenic -24416 ENSMUSG00000027746.13 ENSMUSG00000027746 ENSMUST00000152414 Ufm1 protein_coding Interval_159007 chr8 88696488 88697747 + 0 NA promoter-TSS (ENSMUSG00000036712.15) protein_coding-promoter-TSS (ENSMUSG00000036712.15) 24491 ENSMUSG00000109970.1 ENSMUSG00000109970 ENSMUST00000209266 Gm17995 processed_pseudogene Interval_126776 chr5 92840752 92842030 + 0 NA intron (ENSMUSG00000029381.16, intron 1 of 9) protein_coding-intron (ENSMUSG00000029381.16, intron 1 of 9) -15080 ENSMUSG00000029381.16 ENSMUSG00000029381 ENSMUST00000172752 Shroom3 protein_coding Interval_53203 chr14 55097615 55098355 + 0 NA TTS (ENSMUSG00000040701.16) protein_coding-TTS (ENSMUSG00000040701.16) 3201 ENSMUSG00000045691.14 ENSMUSG00000045691 ENSMUST00000050575 Thtpa protein_coding Interval_61244 chr15 80198985 80200545 + 0 NA intron (ENSMUSG00000042428.6, intron 1 of 1) protein_coding-intron (ENSMUSG00000042428.6, intron 1 of 1) 26044 ENSMUSG00000042428.6 ENSMUSG00000042428 ENSMUST00000044970 Mgat3 protein_coding Interval_73767 chr17 43445477 43445949 + 0 NA intron (ENSMUSG00000056492.6, intron 14 of 20) protein_coding-intron (ENSMUSG00000056492.6, intron 14 of 20) -8542 ENSMUSG00000064582.1 ENSMUSG00000064582 ENSMUST00000082648 Gm25135 snRNA Interval_115146 chr4 91452991 91454253 + 0 NA Intergenic Intergenic -80259 ENSMUSG00000098563.1 ENSMUSG00000098563 ENSMUST00000183406 Mir6402 miRNA Interval_64659 chr16 13966825 13967056 + 0 NA Intergenic Intergenic 2517 ENSMUSG00000089207.1 ENSMUSG00000089207 ENSMUST00000158582 Gm26213 rRNA Interval_138645 chr6 90689849 90690807 + 0 NA TTS (ENSMUSG00000034312.15) protein_coding-TTS (ENSMUSG00000034312.15) 597 ENSMUSG00000107999.1 ENSMUSG00000107999 ENSMUST00000204662 Gm44123 antisense Interval_11172 chr1 179844931 179846023 + 0 NA Intergenic Intergenic 42101 ENSMUSG00000073486.2 ENSMUSG00000073486 ENSMUST00000097454 Gm10518 antisense Interval_149297 chr7 97129272 97129776 + 0 NA intron (ENSMUSG00000004508.6, intron 1 of 9) protein_coding-intron (ENSMUSG00000004508.6, intron 1 of 9) 47748 ENSMUSG00000004508.6 ENSMUSG00000004508 ENSMUST00000206791 Gab2 protein_coding Interval_101958 chr3 13250712 13251407 + 0 NA Intergenic Intergenic -37138 ENSMUSG00000102815.1 ENSMUSG00000102815 ENSMUST00000195003 Gm37813 TEC Interval_124185 chr5 39519991 39520262 + 0 NA TTS (ENSMUSG00000077522.1) snoRNA-TTS (ENSMUSG00000077522.1) 978 ENSMUSG00000077522.1 ENSMUSG00000077522 ENSMUST00000104334 Gm25377 snoRNA Interval_7339 chr1 129559668 129559979 + 0 NA intron (ENSMUSG00000042581.14, intron 1 of 3) protein_coding-intron (ENSMUSG00000042581.14, intron 2 of 15) -53452 ENSMUSG00000042581.14 ENSMUSG00000042581 ENSMUST00000143130 Thsd7b protein_coding Interval_165969 chr9 55068467 55068890 + 0 NA Intergenic Intergenic -1215 ENSMUSG00000111157.1 ENSMUSG00000111157 ENSMUST00000216217 Gm47887 lincRNA Interval_124653 chr5 52855851 52856321 + 0 NA intron (ENSMUSG00000029176.13, intron 2 of 2) protein_coding-intron (ENSMUSG00000029176.13, intron 17 of 27) 739 ENSMUSG00000029176.13 ENSMUSG00000029176 ENSMUST00000138629 Anapc4 protein_coding Interval_64616 chr16 13693240 13693555 + 0 NA intron (ENSMUSG00000022684.15, intron 1 of 1) protein_coding-intron (ENSMUSG00000022684.15, intron 5 of 7) 21410 ENSMUSG00000022684.15 ENSMUSG00000022684 ENSMUST00000154568 Bfar protein_coding Interval_67131 chr16 43710194 43711374 + 0 NA promoter-TSS (ENSMUSG00000116684.1) lincRNA-promoter-TSS (ENSMUSG00000116684.1) 48 ENSMUSG00000116684.1 ENSMUSG00000116684 ENSMUST00000232267 Gm49735 lincRNA Interval_163095 chr9 15250132 15250691 + 0 NA intron (ENSMUSG00000031937.7, intron 1 of 3) protein_coding-intron (ENSMUSG00000031937.7, intron 1 of 3) 11366 ENSMUSG00000031937.7 ENSMUSG00000031937 ENSMUST00000034413 Vstm5 protein_coding Interval_143737 chr7 15986639 15988987 + 0 NA exon (ENSMUSG00000070808.4, exon 5 of 14) protein_coding-exon (ENSMUSG00000070808.4, exon 5 of 14) 15930 ENSMUSG00000109984.1 ENSMUSG00000109984 ENSMUST00000210035 Gm38948 lincRNA Interval_15297 chr10 44306065 44306394 + 0 NA intron (ENSMUSG00000038160.7, intron 5 of 7) protein_coding-intron (ENSMUSG00000038160.7, intron 5 of 7) 37814 ENSMUSG00000038160.7 ENSMUSG00000038160 ENSMUST00000217412 Atg5 protein_coding Interval_105008 chr3 79687999 79688448 + 0 NA intron (ENSMUSG00000034009.14, intron 2 of 15) protein_coding-intron (ENSMUSG00000034009.14, intron 2 of 17) -11347 ENSMUSG00000098204.1 ENSMUSG00000098204 ENSMUST00000182345 Gm26984 sense_intronic Interval_22895 chr11 17173507 17174047 + 0 NA intron (ENSMUSG00000033953.10, intron 1 of 5) protein_coding-intron (ENSMUSG00000033953.10, intron 1 of 5) -8330 ENSMUSG00000078970.5 ENSMUSG00000078970 ENSMUST00000046955 Wdr92 protein_coding Interval_337 chr1 4258260 4258548 + 0 NA intron (ENSMUSG00000102948.1, intron 1 of 1) processed_pseudogene-intron (ENSMUSG00000102948.1, intron 1 of 1) 2115 ENSMUSG00000102948.1 ENSMUSG00000102948 ENSMUST00000195384 Gm6101 processed_pseudogene Interval_38162 chr12 76070005 76072858 + 0 NA promoter-TSS (ENSMUSG00000063450.14) protein_coding-promoter-TSS (ENSMUSG00000063450.14) 81196 ENSMUSG00000046580.10 ENSMUSG00000046580 ENSMUST00000121461 Gm7862 processed_pseudogene Interval_6208 chr1 101764262 101765008 + 0 NA Intergenic Intergenic -10092 ENSMUSG00000100065.1 ENSMUSG00000100065 ENSMUST00000189423 Gm18969 processed_pseudogene Interval_110934 chr4 10490650 10492688 + 0 NA intron (ENSMUSG00000086080.7, intron 3 of 3) lincRNA-intron (ENSMUSG00000086080.7, intron 3 of 3) -2307 ENSMUSG00000086455.1 ENSMUSG00000086455 ENSMUST00000139423 Gm11815 lincRNA Interval_131410 chr5 136998376 136999437 + 0 NA exon (ENSMUSG00000087244.1, exon 5 of 6) unprocessed_pseudogene-exon (ENSMUSG00000087244.1, exon 5 of 6) 1520 ENSMUSG00000087244.1 ENSMUSG00000087244 ENSMUST00000131667 Gm7284 unprocessed_pseudogene Interval_15254 chr10 43830392 43830632 + 0 NA intron (ENSMUSG00000111342.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000111342.1, intron 1 of 1) 3932 ENSMUSG00000111342.1 ENSMUSG00000111342 ENSMUST00000217125 4933404K13Rik lincRNA Interval_143171 chr7 4136479 4137728 + 0 NA promoter-TSS (ENSMUSG00000035545.13) protein_coding-promoter-TSS (ENSMUSG00000035545.13) -177 ENSMUSG00000085886.1 ENSMUSG00000085886 ENSMUST00000148318 D030047H15Rik antisense Interval_62089 chr15 86390730 86391229 + 0 NA intron (ENSMUSG00000051864.10, intron 10 of 12) protein_coding-intron (ENSMUSG00000051864.10, intron 10 of 12) 84119 ENSMUSG00000115918.1 ENSMUSG00000115918 ENSMUST00000229685 A930001M01Rik antisense Interval_26246 chr11 55417574 55418618 + 0 NA intron (ENSMUSG00000018593.13, intron 1 of 9) protein_coding-intron (ENSMUSG00000018593.13, intron 1 of 9) 2229 ENSMUSG00000018593.13 ENSMUSG00000018593 ENSMUST00000125787 Sparc protein_coding Interval_141619 chr6 131387219 131389025 + 0 NA exon (ENSMUSG00000030189.15, exon 1 of 10) protein_coding-exon (ENSMUSG00000030189.15, exon 1 of 10) -7716 ENSMUSG00000065036.1 ENSMUSG00000065036 ENSMUST00000083102 Gm22362 snoRNA Interval_57172 chr15 7134546 7134899 + 0 NA intron (ENSMUSG00000054263.12, intron 2 of 16) protein_coding-intron (ENSMUSG00000054263.12, intron 1 of 19) 44108 ENSMUSG00000054263.12 ENSMUSG00000054263 ENSMUST00000171588 Lifr protein_coding Interval_87256 chr19 47213615 47214024 + 0 NA intron (ENSMUSG00000006435.16, intron 1 of 2) protein_coding-intron (ENSMUSG00000006435.16, intron 1 of 5) 8090 ENSMUSG00000117659.1 ENSMUSG00000117659 ENSMUST00000236562 Gm50339 antisense Interval_23051 chr11 19408844 19409507 + 0 NA Intergenic Intergenic 25490 ENSMUSG00000082737.3 ENSMUSG00000082737 ENSMUST00000120961 Gm12026 processed_pseudogene Interval_68188 chr16 67390971 67391706 + 0 NA intron (ENSMUSG00000064115.13, intron 1 of 9) protein_coding-intron (ENSMUSG00000064115.13, intron 1 of 9) -152988 ENSMUSG00000116904.1 ENSMUSG00000116904 ENSMUST00000232322 Gm49640 processed_pseudogene Interval_110169 chr3 153937061 153938094 + 0 NA promoter-TSS (ENSMUSG00000062908.12) protein_coding-promoter-TSS (ENSMUSG00000062908.12) 232 ENSMUSG00000062908.12 ENSMUSG00000062908 ENSMUST00000135724 Acadm protein_coding Interval_41863 chr13 3636817 3637054 + 0 NA intron (ENSMUSG00000033781.7, intron 1 of 3) protein_coding-intron (ENSMUSG00000033781.7, intron 1 of 5) 2846 ENSMUSG00000033781.7 ENSMUSG00000033781 ENSMUST00000141967 Asb13 protein_coding Interval_158139 chr8 79112556 79112978 + 0 NA intron (ENSMUSG00000071064.15, intron 5 of 13) protein_coding-intron (ENSMUSG00000071064.15, intron 5 of 14) 84180 ENSMUSG00000071064.15 ENSMUSG00000071064 ENSMUST00000129613 Zfp827 protein_coding Interval_153389 chr7 144294243 144294839 + 0 NA intron (ENSMUSG00000037541.22, intron 4 of 12) protein_coding-intron (ENSMUSG00000037541.22, intron 2 of 9) 55816 ENSMUSG00000037541.22 ENSMUSG00000037541 ENSMUST00000136979 Shank2 protein_coding Interval_62164 chr15 88412885 88413166 + 0 NA Intergenic Intergenic -97393 ENSMUSG00000115880.1 ENSMUSG00000115880 ENSMUST00000230151 4930445N06Rik lincRNA Interval_151619 chr7 125409793 125410087 + 0 NA Intergenic Intergenic 8174 ENSMUSG00000108814.1 ENSMUSG00000108814 ENSMUST00000206549 Gm30717 lincRNA Interval_78834 chr18 20892010 20892233 + 0 NA intron (ENSMUSG00000033382.15, intron 1 of 28) protein_coding-intron (ENSMUSG00000033382.15, intron 1 of 15) 3972 ENSMUSG00000033382.15 ENSMUSG00000033382 ENSMUST00000224530 Trappc8 protein_coding Interval_82947 chr18 79925513 79925717 + 0 NA Intergenic Intergenic -8717 ENSMUSG00000117669.1 ENSMUSG00000117669 ENSMUST00000235834 Gm5509 processed_pseudogene Interval_54113 chr14 65404006 65405145 + 0 NA intron (ENSMUSG00000045731.6, intron 3 of 3) protein_coding-intron (ENSMUSG00000045731.6, intron 3 of 3) 20585 ENSMUSG00000045731.6 ENSMUSG00000045731 ENSMUST00000224594 Pnoc protein_coding Interval_133475 chr6 5446546 5447786 + 0 NA Intergenic Intergenic 49095 ENSMUSG00000019577.6 ENSMUSG00000019577 ENSMUST00000134068 Pdk4 protein_coding Interval_37817 chr12 72235758 72237061 + 0 NA promoter-TSS (ENSMUSG00000021087.18) protein_coding-promoter-TSS (ENSMUSG00000021087.18) 139 ENSMUSG00000021087.18 ENSMUSG00000021087 ENSMUST00000221756 Rtn1 protein_coding Interval_69456 chr16 93626324 93627750 + 0 NA Intergenic Intergenic -1060 ENSMUSG00000082815.2 ENSMUSG00000082815 ENSMUST00000120115 Gm5678 protein_coding Interval_83038 chr18 80655118 80656265 + 0 NA intron (ENSMUSG00000033016.16, intron 6 of 7) protein_coding-intron (ENSMUSG00000033016.16, intron 6 of 7) -46716 ENSMUSG00000033016.16 ENSMUSG00000033016 ENSMUST00000236711 Nfatc1 protein_coding Interval_79885 chr18 35739848 35740716 + 0 NA promoter-TSS (ENSMUSG00000024349.10) protein_coding-promoter-TSS (ENSMUSG00000024349.10) 197 ENSMUSG00000024349.10 ENSMUSG00000024349 ENSMUST00000237405 Sting1 protein_coding Interval_2506 chr1 39850763 39852166 + 0 NA Intergenic Intergenic -4134 ENSMUSG00000101634.6 ENSMUSG00000101634 ENSMUST00000186683 1700066B17Rik lincRNA Interval_22736 chr11 14166900 14167586 + 0 NA intron (ENSMUSG00000085452.1, intron 1 of 3) lincRNA-intron (ENSMUSG00000085452.1, intron 1 of 3) 5164 ENSMUSG00000081631.1 ENSMUSG00000081631 ENSMUST00000121451 Gm12005 processed_pseudogene Interval_121239 chr4 154299612 154300343 + 0 NA promoter-TSS (ENSMUSG00000029032.12) protein_coding-promoter-TSS (ENSMUSG00000029032.12) 1686 ENSMUSG00000029032.12 ENSMUSG00000029032 ENSMUST00000152947 Arhgef16 protein_coding Interval_24178 chr11 30961820 30962629 + 0 NA intron (ENSMUSG00000020305.13, intron 1 of 3) protein_coding-intron (ENSMUSG00000020305.13, intron 1 of 9) -14022 ENSMUSG00000020311.17 ENSMUSG00000020311 ENSMUST00000152770 Erlec1 protein_coding Interval_88790 chr2 10824888 10826168 + 0 NA Intergenic Intergenic -68181 ENSMUSG00000103237.1 ENSMUSG00000103237 ENSMUST00000192439 Gm18547 processed_pseudogene Interval_88346 chr2 4228567 4228848 + 0 NA intron (ENSMUSG00000026657.17, intron 1 of 22) protein_coding-intron (ENSMUSG00000026657.17, intron 1 of 22) 11626 ENSMUSG00000102357.1 ENSMUSG00000102357 ENSMUST00000191718 Gm38348 sense_intronic Interval_138806 chr6 92066270 92068033 + 0 NA promoter-TSS (ENSMUSG00000034037.14) protein_coding-promoter-TSS (ENSMUSG00000034037.14) -278 ENSMUSG00000034037.14 ENSMUSG00000034037 ENSMUST00000130369 Fgd5 protein_coding Interval_141898 chr6 135216575 135217050 + 0 NA intron (ENSMUSG00000030207.15, intron 3 of 13) protein_coding-intron (ENSMUSG00000030207.15, intron 3 of 12) -14789 ENSMUSG00000030207.15 ENSMUSG00000030207 ENSMUST00000151951 Fam234b protein_coding Interval_115707 chr4 102812734 102813898 + 0 NA intron (ENSMUSG00000028524.21, intron 1 of 4) protein_coding-intron (ENSMUSG00000028524.21, intron 1 of 23) 52851 ENSMUSG00000028524.21 ENSMUSG00000028524 ENSMUST00000140676 Sgip1 protein_coding Interval_152402 chr7 132790320 132791168 + 0 NA intron (ENSMUSG00000030956.15, intron 1 of 3) protein_coding-intron (ENSMUSG00000030956.15, intron 1 of 3) 12006 ENSMUSG00000030956.15 ENSMUSG00000030956 ENSMUST00000148303 Fam53b protein_coding Interval_117058 chr4 119266620 119267544 + 0 NA Intergenic Intergenic -10107 ENSMUSG00000085203.1 ENSMUSG00000085203 ENSMUST00000150252 Gm12927 antisense Interval_52581 chr14 47661829 47662188 + 0 NA intron (ENSMUSG00000021843.17, intron 2 of 39) protein_coding-intron (ENSMUSG00000021843.17, intron 1 of 1) -1779 ENSMUSG00000021843.17 ENSMUSG00000021843 ENSMUST00000190857 Ktn1 protein_coding Interval_47431 chr13 84071362 84071641 + 0 NA Intergenic Intergenic -6729 ENSMUSG00000098087.1 ENSMUSG00000098087 ENSMUST00000182477 Gm17750 lincRNA Interval_80582 chr18 44421839 44422438 + 0 NA exon (ENSMUSG00000024472.9, exon 11 of 11) protein_coding-exon (ENSMUSG00000024472.9, exon 11 of 11) 41636 ENSMUSG00000024472.9 ENSMUSG00000024472 ENSMUST00000025350 Dcp2 protein_coding Interval_151241 chr7 120097937 120098659 + 0 NA Intergenic Intergenic -3018 ENSMUSG00000052273.4 ENSMUSG00000052273 ENSMUST00000213993 Dnah3 protein_coding Interval_73379 chr17 36883007 36883179 + 0 NA exon (ENSMUSG00000073399.9, exon 2 of 2) protein_coding-exon (ENSMUSG00000073399.9, exon 2 of 2) 7030 ENSMUSG00000073399.9 ENSMUSG00000073399 ENSMUST00000172640 Trim40 protein_coding Interval_166271 chr9 57920346 57923097 + 0 NA exon (ENSMUSG00000055720.10, exon 7 of 11) protein_coding-exon (ENSMUSG00000055720.10, exon 7 of 11) 9087 ENSMUSG00000055720.10 ENSMUSG00000055720 ENSMUST00000215936 Ubl7 protein_coding Interval_81695 chr18 63641480 63641840 + 0 NA Intergenic Intergenic 56924 ENSMUSG00000088656.1 ENSMUSG00000088656 ENSMUST00000158031 Gm24848 snRNA Interval_690 chr1 9942391 9944761 + 0 NA promoter-TSS (ENSMUSG00000098234.7) lincRNA-promoter-TSS (ENSMUSG00000098234.7) -353 ENSMUSG00000098234.7 ENSMUSG00000098234 ENSMUST00000182742 Snhg6 lincRNA Interval_45793 chr13 58117534 58117928 + 0 NA Intergenic Intergenic -4139 ENSMUSG00000014164.15 ENSMUSG00000014164 ENSMUST00000160860 Klhl3 protein_coding Interval_149443 chr7 98566890 98567518 + 0 NA Intergenic Intergenic -4214 ENSMUSG00000055446.5 ENSMUSG00000055446 ENSMUST00000069035 A630091E08Rik lincRNA Interval_110713 chr4 6743914 6744389 + 0 NA intron (ENSMUSG00000041272.11, intron 4 of 4) protein_coding-intron (ENSMUSG00000041272.11, intron 3 of 8) 55982 ENSMUSG00000086052.1 ENSMUSG00000086052 ENSMUST00000137749 Gm11802 antisense Interval_85683 chr19 29655100 29655723 + 0 NA Intergenic Intergenic -9384 ENSMUSG00000046324.12 ENSMUSG00000046324 ENSMUST00000160907 Ermp1 protein_coding Interval_58441 chr15 34536110 34536402 + 0 NA Intergenic Intergenic 4542 ENSMUSG00000084607.1 ENSMUSG00000084607 ENSMUST00000122658 Gm22208 snRNA Interval_162767 chr9 8768845 8770663 + 0 NA Intergenic Intergenic -28766 ENSMUSG00000111602.1 ENSMUSG00000111602 ENSMUST00000214779 Gm32014 lincRNA Interval_37978 chr12 73554007 73554781 + 0 NA Intergenic Intergenic 5916 ENSMUSG00000113800.1 ENSMUSG00000113800 ENSMUST00000222490 2210039B01Rik lincRNA Interval_95352 chr2 106849606 106849989 + 0 NA intron (ENSMUSG00000016386.15, intron 4 of 6) protein_coding-intron (ENSMUSG00000016386.15, intron 4 of 6) 40461 ENSMUSG00000105450.1 ENSMUSG00000105450 ENSMUST00000199948 Gm22813 scaRNA Interval_14987 chr10 41726938 41727463 + 0 NA intron (ENSMUSG00000019813.16, intron 7 of 10) protein_coding-intron (ENSMUSG00000019813.16, intron 7 of 10) -19521 ENSMUSG00000102114.2 ENSMUSG00000102114 ENSMUST00000190793 BC048559 antisense Interval_128948 chr5 116253349 116254467 + 0 NA intron (ENSMUSG00000086122.1, intron 1 of 1) protein_coding-intron (ENSMUSG00000043913.14, intron 1 of 13) -3753 ENSMUSG00000086055.1 ENSMUSG00000086055 ENSMUST00000126326 Gm13837 antisense Interval_28870 chr11 78890253 78890767 + 0 NA Intergenic Intergenic -34666 ENSMUSG00000020826.9 ENSMUSG00000020826 ENSMUST00000214397 Nos2 protein_coding Interval_129690 chr5 121783885 121784501 + 0 NA promoter-TSS (ENSMUSG00000042605.16) protein_coding-promoter-TSS (ENSMUSG00000042605.16) 35080 ENSMUSG00000099063.1 ENSMUSG00000099063 ENSMUST00000183860 Mir7031 miRNA Interval_33066 chr11 114116359 114116598 + 0 NA Intergenic Intergenic 25072 ENSMUSG00000086760.1 ENSMUSG00000086760 ENSMUST00000129365 1700025D23Rik lincRNA Interval_1964 chr1 35048796 35049210 + 0 NA Intergenic Intergenic 63347 ENSMUSG00000103997.1 ENSMUSG00000103997 ENSMUST00000192315 Gm38027 processed_pseudogene Interval_31854 chr11 103382147 103382412 + 0 NA intron (ENSMUSG00000034247.9, intron 1 of 7) protein_coding-intron (ENSMUSG00000034247.9, intron 5 of 11) 12489 ENSMUSG00000034247.9 ENSMUSG00000034247 ENSMUST00000184350 Plekhm1 protein_coding Interval_116766 chr4 117159573 117160237 + 0 NA TTS (ENSMUSG00000028678.13) protein_coding-TTS (ENSMUSG00000028678.13) -1472 ENSMUSG00000095209.1 ENSMUSG00000095209 ENSMUST00000174941 Gm22398 miRNA Interval_124480 chr5 48650945 48651273 + 0 NA intron (ENSMUSG00000029088.16, intron 1 of 8) protein_coding-intron (ENSMUSG00000029088.16, intron 1 of 8) -14796 ENSMUSG00000093748.1 ENSMUSG00000093748 ENSMUST00000176280 Gm19031 processed_pseudogene Interval_21 GL456211.1 102973 103235 + 0 NA NA NA NA NA Interval_143515 chr7 11500798 11501263 + 0 NA intron (ENSMUSG00000110076.1, intron 3 of 5) unprocessed_pseudogene-intron (ENSMUSG00000110076.1, intron 3 of 5) 2966 ENSMUSG00000110076.1 ENSMUSG00000110076 ENSMUST00000210180 Gm45549 unprocessed_pseudogene Interval_14572 chr10 36151946 36152481 + 0 NA Intergenic Intergenic 56337 ENSMUSG00000110987.1 ENSMUSG00000110987 ENSMUST00000215218 Gm47048 processed_pseudogene Interval_7895 chr1 134432811 134434092 + 0 NA TTS (ENSMUSG00000026457.14) protein_coding-TTS (ENSMUSG00000026457.14) -2177 ENSMUSG00000101061.1 ENSMUSG00000101061 ENSMUST00000188474 Platr1 lincRNA Interval_73839 chr17 44419997 44420266 + 0 NA Intergenic Intergenic -52228 ENSMUSG00000117106.1 ENSMUSG00000117106 ENSMUST00000233110 Gm49872 lincRNA Interval_104235 chr3 61402866 61403212 + 0 NA Intergenic Intergenic -37088 ENSMUSG00000053706.2 ENSMUSG00000053706 ENSMUST00000066298 B430305J03Rik protein_coding Interval_80239 chr18 38474985 38476344 + 0 NA Intergenic Intergenic 5639 ENSMUSG00000118112.1 ENSMUSG00000118112 ENSMUST00000236084 Gm50349 processed_pseudogene Interval_173797 chrX 104406183 104406412 + 0 NA intron (ENSMUSG00000031333.7, intron 1 of 2) protein_coding-intron (ENSMUSG00000031333.7, intron 1 of 15) 7559 ENSMUSG00000031333.7 ENSMUSG00000031333 ENSMUST00000140333 Abcb7 protein_coding Interval_146501 chr7 46460427 46461274 + 0 NA intron (ENSMUSG00000030839.12, intron 3 of 3) protein_coding-intron (ENSMUSG00000030839.12, intron 10 of 10) 10437 ENSMUSG00000094229.1 ENSMUSG00000094229 ENSMUST00000179018 Gm22969 snRNA Interval_86686 chr19 42611867 42613543 + 0 NA promoter-TSS (ENSMUSG00000025185.14) protein_coding-promoter-TSS (ENSMUSG00000025185.14) -4174 ENSMUSG00000025185.14 ENSMUSG00000025185 ENSMUST00000166128 Loxl4 protein_coding Interval_11030 chr1 178552942 178554371 + 0 NA intron (ENSMUSG00000026494.12, intron 2 of 3) protein_coding-intron (ENSMUSG00000026494.12, intron 2 of 14) 24531 ENSMUSG00000026494.12 ENSMUSG00000026494 ENSMUST00000160789 Kif26b protein_coding Interval_80528 chr18 43360202 43360416 + 0 NA intron (ENSMUSG00000024501.20, intron 3 of 13) protein_coding-intron (ENSMUSG00000024501.20, intron 3 of 13) 12914 ENSMUSG00000024501.20 ENSMUSG00000024501 ENSMUST00000118071 Dpysl3 protein_coding Interval_125301 chr5 66056637 66057666 + 0 NA intron (ENSMUSG00000070780.11, intron 2 of 3) protein_coding-intron (ENSMUSG00000070780.11, intron 2 of 5) 15744 ENSMUSG00000107304.1 ENSMUSG00000107304 ENSMUST00000201019 Gm43775 TEC Interval_108686 chr3 130079885 130080473 + 0 NA promoter-TSS (ENSMUSG00000106072.1) processed_pseudogene-promoter-TSS (ENSMUSG00000106072.1) -600 ENSMUSG00000106072.1 ENSMUSG00000106072 ENSMUST00000199883 Gm42663 processed_pseudogene Interval_39736 chr12 95919321 95919532 + 0 NA Intergenic Intergenic 127694 ENSMUSG00000059695.4 ENSMUSG00000059695 ENSMUST00000073560 1700019M22Rik processed_pseudogene Interval_13613 chr10 20188942 20189306 + 0 NA intron (ENSMUSG00000019996.17, intron 1 of 5) protein_coding-intron (ENSMUSG00000019996.17, intron 1 of 17) 12714 ENSMUSG00000110754.1 ENSMUSG00000110754 ENSMUST00000214323 4930405J17Rik antisense Interval_123209 chr5 30658570 30661101 + 0 NA TTS (ENSMUSG00000029175.17) protein_coding-TTS (ENSMUSG00000029175.17) 3739 ENSMUSG00000029175.17 ENSMUSG00000029175 ENSMUST00000199052 Slc35f6 protein_coding Interval_11130 chr1 179552088 179553066 + 0 NA intron (ENSMUSG00000038949.8, intron 1 of 3) protein_coding-intron (ENSMUSG00000038949.8, intron 1 of 10) 6068 ENSMUSG00000038949.8 ENSMUSG00000038949 ENSMUST00000143270 Cnst protein_coding Interval_78092 chr18 7905769 7907271 + 0 NA intron (ENSMUSG00000024283.15, intron 6 of 12) protein_coding-intron (ENSMUSG00000024283.15, intron 6 of 13) -26262 ENSMUSG00000091019.1 ENSMUSG00000091019 ENSMUST00000169235 Gm7502 processed_pseudogene Interval_82808 chr18 77154355 77154655 + 0 NA TTS (ENSMUSG00000025423.16) protein_coding-TTS (ENSMUSG00000025423.16) 31858 ENSMUSG00000073532.3 ENSMUSG00000073532 ENSMUST00000097520 Gm7276 bidirectional_promoter_lncRNA Interval_125291 chr5 65987335 65987582 + 0 NA TTS (ENSMUSG00000054598.13) protein_coding-TTS (ENSMUSG00000054598.13) -1587 ENSMUSG00000093070.1 ENSMUSG00000093070 ENSMUST00000175329 Gm25952 miRNA Interval_107813 chr3 115689613 115690459 + 0 NA Intergenic Intergenic 25036 ENSMUSG00000045092.8 ENSMUSG00000045092 ENSMUST00000055676 S1pr1 protein_coding Interval_107516 chr3 108249495 108250399 + 0 NA intron (ENSMUSG00000085102.1, intron 1 of 1) antisense-intron (ENSMUSG00000085102.1, intron 1 of 1) 7038 ENSMUSG00000085102.1 ENSMUSG00000085102 ENSMUST00000125852 1700010K24Rik antisense Interval_42319 chr13 12057274 12058709 + 0 NA intron (ENSMUSG00000021313.16, intron 1 of 2) protein_coding-intron (ENSMUSG00000021313.16, intron 1 of 104) -5936 ENSMUSG00000112947.1 ENSMUSG00000112947 ENSMUST00000220599 Gm47493 TEC Interval_96845 chr2 128863649 128864586 + 0 NA exon (ENSMUSG00000027386.9, exon 1 of 8) protein_coding-exon (ENSMUSG00000027386.9, exon 1 of 8) 1136 ENSMUSG00000027386.9 ENSMUSG00000027386 ENSMUST00000028864 Fbln7 protein_coding Interval_125179 chr5 65127422 65127632 + 0 NA intron (ENSMUSG00000054920.12, intron 1 of 10) protein_coding-intron (ENSMUSG00000054920.12, intron 1 of 10) -3625 ENSMUSG00000054920.12 ENSMUSG00000054920 ENSMUST00000203538 Klhl5 protein_coding Interval_47620 chr13 90200161 90200566 + 0 NA intron (ENSMUSG00000114541.1, intron 3 of 5) lincRNA-intron (ENSMUSG00000114541.1, intron 3 of 5) 16779 ENSMUSG00000114541.1 ENSMUSG00000114541 ENSMUST00000225610 Gm29680 lincRNA Interval_153730 chr8 5451344 5451613 + 0 NA Intergenic Intergenic -10488 ENSMUSG00000109313.1 ENSMUSG00000109313 ENSMUST00000208141 Gm44693 lincRNA Interval_63861 chr16 4053408 4053708 + 0 NA exon (ENSMUSG00000005981.11, exon 10 of 18) protein_coding-exon (ENSMUSG00000005981.11, exon 10 of 18) 3939 ENSMUSG00000093262.1 ENSMUSG00000093262 ENSMUST00000175521 Gm23413 miRNA Interval_19603 chr10 105507897 105510200 + 0 NA promoter-TSS (ENSMUSG00000084399.2) transcribed_processed_pseudogene-promoter-TSS (ENSMUSG00000084399.2) -449 ENSMUSG00000084399.2 ENSMUSG00000084399 ENSMUST00000118054 Gm15666 transcribed_processed_pseudogene Interval_108680 chr3 130053921 130054505 + 0 NA intron (ENSMUSG00000001052.15, intron 1 of 1) protein_coding-intron (ENSMUSG00000001052.15, intron 1 of 23) -14199 ENSMUSG00000063328.6 ENSMUSG00000063328 ENSMUST00000076703 Gm9396 processed_pseudogene Interval_89232 chr2 18219386 18219709 + 0 NA promoter-TSS (ENSMUSG00000026740.12) protein_coding-promoter-TSS (ENSMUSG00000026740.12) -2645 ENSMUSG00000026740.12 ENSMUSG00000026740 ENSMUST00000165793 Dnajc1 protein_coding Interval_67664 chr16 55813256 55814905 + 0 NA exon (ENSMUSG00000035356.17, exon 13 of 14) protein_coding-exon (ENSMUSG00000035356.17, exon 13 of 14) 4435 ENSMUSG00000035356.17 ENSMUSG00000035356 ENSMUST00000139373 Nfkbiz protein_coding Interval_57694 chr15 15658815 15659071 + 0 NA Intergenic Intergenic -121051 ENSMUSG00000115266.1 ENSMUSG00000115266 ENSMUST00000226912 4930557F08Rik lincRNA Interval_134913 chr6 33524436 33524630 + 0 NA intron (ENSMUSG00000029763.17, intron 9 of 12) protein_coding-intron (ENSMUSG00000029763.17, intron 9 of 17) 91525 ENSMUSG00000107358.1 ENSMUSG00000107358 ENSMUST00000201039 Gm43168 TEC Interval_103412 chr3 41386494 41387121 + 0 NA intron (ENSMUSG00000105297.1, intron 1 of 3) lincRNA-intron (ENSMUSG00000105297.1, intron 1 of 3) 32660 ENSMUSG00000105297.1 ENSMUSG00000105297 ENSMUST00000196142 1700052H01Rik lincRNA Interval_10435 chr1 170850771 170851498 + 0 NA intron (ENSMUSG00000026663.6, intron 3 of 15) protein_coding-intron (ENSMUSG00000026663.6, intron 3 of 15) -17511 ENSMUSG00000053925.4 ENSMUSG00000053925 ENSMUST00000171747 Gm9929 processed_transcript Interval_11102 chr1 179376572 179376993 + 0 NA TTS (ENSMUSG00000055067.15) protein_coding-TTS (ENSMUSG00000055067.15) 141223 ENSMUSG00000055067.15 ENSMUSG00000055067 ENSMUST00000194237 Smyd3 protein_coding Interval_82076 chr18 67566458 67567328 + 0 NA intron (ENSMUSG00000024533.17, intron 2 of 16) protein_coding-intron (ENSMUSG00000024533.17, intron 2 of 16) 4499 ENSMUSG00000091695.2 ENSMUSG00000091695 ENSMUST00000163749 Gm17669 processed_pseudogene Interval_19198 chr10 95453462 95453668 + 0 NA intron (ENSMUSG00000112261.1, intron 2 of 2) lincRNA-intron (ENSMUSG00000112261.1, intron 2 of 2) 1401 ENSMUSG00000112725.1 ENSMUSG00000112725 ENSMUST00000220014 Gm47600 processed_pseudogene Interval_8710 chr1 149540529 149540865 + 0 NA Intergenic Intergenic -90746 ENSMUSG00000101011.6 ENSMUSG00000101011 ENSMUST00000186355 Gm29398 lincRNA Interval_75842 chr17 71744991 71745221 + 0 NA intron (ENSMUSG00000044375.8, intron 1 of 1) protein_coding-intron (ENSMUSG00000044375.8, intron 1 of 1) 7788 ENSMUSG00000044375.8 ENSMUSG00000044375 ENSMUST00000057405 Pcare protein_coding Interval_72518 chr17 30377714 30378976 + 0 NA intron (ENSMUSG00000062202.14, intron 6 of 6) protein_coding-intron (ENSMUSG00000062202.14, intron 6 of 11) 17688 ENSMUSG00000117962.1 ENSMUSG00000117962 ENSMUST00000235315 Gm6402 processed_pseudogene Interval_65482 chr16 22635761 22635962 + 0 NA intron (ENSMUSG00000022861.17, intron 1 of 5) protein_coding-intron (ENSMUSG00000022861.17, intron 1 of 23) 21328 ENSMUSG00000022861.17 ENSMUSG00000022861 ENSMUST00000231249 Dgkg protein_coding Interval_171657 chr9 119983526 119985178 + 0 NA promoter-TSS (ENSMUSG00000032515.8) protein_coding-promoter-TSS (ENSMUSG00000032515.8) -573 ENSMUSG00000032515.8 ENSMUSG00000032515 ENSMUST00000216929 Csrnp1 protein_coding Interval_84964 chr19 20426415 20427044 + 0 NA intron (ENSMUSG00000114469.2, intron 4 of 4) lincRNA-intron (ENSMUSG00000094732.2, intron 5 of 7) -1947 ENSMUSG00000114469.2 ENSMUSG00000114469 ENSMUST00000225910 C730002L08Rik processed_transcript Interval_95372 chr2 107082278 107085048 + 0 NA Intergenic Intergenic 13812 ENSMUSG00000089408.1 ENSMUSG00000089408 ENSMUST00000158783 Gm24885 ribozyme Interval_74174 chr17 46903815 46904545 + 0 NA Intergenic Intergenic -6298 ENSMUSG00000023978.5 ENSMUSG00000023978 ENSMUST00000162469 Prph2 protein_coding Interval_171878 chr9 121950489 121951760 + 0 NA promoter-TSS (ENSMUSG00000038233.10) protein_coding-promoter-TSS (ENSMUSG00000038233.10) 89 ENSMUSG00000038233.10 ENSMUSG00000038233 ENSMUST00000213773 Gask1a protein_coding Interval_48326 chr13 98205572 98206736 + 0 NA promoter-TSS (ENSMUSG00000021662.11) protein_coding-promoter-TSS (ENSMUSG00000021662.11) 48003 ENSMUSG00000041747.3 ENSMUSG00000041747 ENSMUST00000224842 Utp15 protein_coding Interval_161866 chr8 123307699 123309938 + 0 NA intron (ENSMUSG00000032815.16, intron 5 of 25) protein_coding-intron (ENSMUSG00000032815.16, intron 6 of 42) -38522 ENSMUSG00000032815.16 ENSMUSG00000032815 ENSMUST00000150318 Fanca protein_coding Interval_103148 chr3 35939818 35941149 + 0 NA intron (ENSMUSG00000085655.5, intron 2 of 2) antisense-intron (ENSMUSG00000085655.5, intron 2 of 2) 7438 ENSMUSG00000085655.5 ENSMUSG00000085655 ENSMUST00000144542 Gm15952 antisense Interval_15747 chr10 55928722 55929177 + 0 NA Intergenic Intergenic 173054 ENSMUSG00000112528.1 ENSMUSG00000112528 ENSMUST00000218919 Gm29794 processed_pseudogene Interval_20205 chr10 115812796 115813360 + 0 NA intron (ENSMUSG00000112513.1, intron 4 of 4) antisense-intron (ENSMUSG00000112513.1, intron 4 of 4) -3754 ENSMUSG00000034127.15 ENSMUSG00000034127 ENSMUST00000035563 Tspan8 protein_coding Interval_18238 chr10 84085213 84085485 + 0 NA intron (ENSMUSG00000111049.1, intron 1 of 4) lincRNA-intron (ENSMUSG00000111049.1, intron 1 of 4) -6917 ENSMUSG00000111524.1 ENSMUSG00000111524 ENSMUST00000213796 Gm34113 lincRNA Interval_5142 chr1 86015884 86016927 + 0 NA promoter-TSS (ENSMUSG00000026226.16) protein_coding-promoter-TSS (ENSMUSG00000026226.16) -519 ENSMUSG00000099342.1 ENSMUSG00000099342 ENSMUST00000187562 Gm18180 processed_pseudogene Interval_47263 chr13 80049407 80049845 + 0 NA intron (ENSMUSG00000100168.2, intron 1 of 2) lincRNA-intron (ENSMUSG00000100168.2, intron 1 of 2) 49792 ENSMUSG00000114287.1 ENSMUSG00000114287 ENSMUST00000224279 Gm5197 processed_pseudogene Interval_88121 chr19 59373102 59373776 + 0 NA Intergenic Intergenic -16345 ENSMUSG00000110210.1 ENSMUSG00000110210 ENSMUST00000211358 Gm33756 lincRNA Interval_165162 chr9 44916372 44916784 + 0 NA exon (ENSMUSG00000038717.8, exon 1 of 1) protein_coding-exon (ENSMUSG00000038717.8, exon 1 of 1) 2288 ENSMUSG00000038717.8 ENSMUSG00000038717 ENSMUST00000213999 Atp5l protein_coding Interval_174842 chrX 169411293 169411856 + 0 NA Intergenic Intergenic -36256 ENSMUSG00000087587.1 ENSMUSG00000087587 ENSMUST00000129410 Gm15245 lincRNA Interval_84314 chr19 10023089 10023653 + 0 NA intron (ENSMUSG00000024663.20, intron 2 of 6) protein_coding-intron (ENSMUSG00000024663.20, intron 1 of 9) 5178 ENSMUSG00000024663.20 ENSMUSG00000024663 ENSMUST00000129882 Rab3il1 protein_coding Interval_19101 chr10 94557567 94557984 + 0 NA intron (ENSMUSG00000020023.18, intron 1 of 1) protein_coding-intron (ENSMUSG00000020023.18, intron 1 of 3) 6923 ENSMUSG00000020023.18 ENSMUSG00000020023 ENSMUST00000117929 Tmcc3 protein_coding Interval_88395 chr2 4717096 4718620 + 0 NA promoter-TSS (ENSMUSG00000048186.14) protein_coding-promoter-TSS (ENSMUSG00000048186.14) 27 ENSMUSG00000048186.14 ENSMUSG00000048186 ENSMUST00000138322 Bend7 protein_coding Interval_64990 chr16 17727200 17727872 + 0 NA intron (ENSMUSG00000012114.17, intron 1 of 4) protein_coding-intron (ENSMUSG00000012114.17, intron 1 of 4) 2160 ENSMUSG00000116783.1 ENSMUSG00000116783 ENSMUST00000232388 Gm6048 processed_pseudogene Interval_145352 chr7 34164821 34165618 + 0 NA promoter-TSS (ENSMUSG00000052997.15) protein_coding-promoter-TSS (ENSMUSG00000052997.15) -878 ENSMUSG00000052997.15 ENSMUSG00000052997 ENSMUST00000206651 Uba2 protein_coding Interval_151513 chr7 123191661 123191911 + 0 NA intron (ENSMUSG00000052707.8, intron 10 of 11) protein_coding-intron (ENSMUSG00000052707.8, intron 22 of 23) 20140 ENSMUSG00000052707.8 ENSMUSG00000052707 ENSMUST00000206126 Tnrc6a protein_coding Interval_42256 chr13 11099060 11100342 + 0 NA Intergenic Intergenic 125278 ENSMUSG00000113673.1 ENSMUSG00000113673 ENSMUST00000221075 Gm47486 lincRNA Interval_102611 chr3 28401022 28401562 + 0 NA intron (ENSMUSG00000027692.16, intron 2 of 30) protein_coding-intron (ENSMUSG00000027692.16, intron 2 of 30) -18651 ENSMUSG00000092990.1 ENSMUSG00000092990 ENSMUST00000175249 Mir466q miRNA Interval_27918 chr11 70844234 70845732 + 0 NA promoter-TSS (ENSMUSG00000020817.16) protein_coding-promoter-TSS (ENSMUSG00000020817.16) 191 ENSMUSG00000020817.16 ENSMUSG00000020817 ENSMUST00000178245 Rabep1 protein_coding Interval_51587 chr14 30537917 30538345 + 0 NA Intergenic Intergenic 14424 ENSMUSG00000021962.9 ENSMUSG00000021962 ENSMUST00000225934 Dcp1a protein_coding Interval_5348 chr1 87790526 87792140 + 0 NA exon (ENSMUSG00000026289.15, exon 18 of 18) protein_coding-exon (ENSMUSG00000026289.15, exon 18 of 18) 6777 ENSMUSG00000089281.1 ENSMUSG00000089281 ENSMUST00000158656 Scarna6 scaRNA Interval_79535 chr18 33078024 33079023 + 0 NA TTS (ENSMUSG00000038128.7) protein_coding-TTS (ENSMUSG00000038128.7) -73757 ENSMUSG00000088077.1 ENSMUSG00000088077 ENSMUST00000157452 Gm22814 snRNA Interval_15607 chr10 52277488 52279346 + 0 NA intron (ENSMUSG00000019891.15, intron 2 of 2) protein_coding-intron (ENSMUSG00000019891.15, intron 2 of 10) 44780 ENSMUSG00000019891.15 ENSMUSG00000019891 ENSMUST00000218582 Dcbld1 protein_coding Interval_119284 chr4 136648993 136649727 + 0 NA exon (ENSMUSG00000028664.14, exon 16 of 16) protein_coding-exon (ENSMUSG00000028664.14, exon 16 of 16) 9778 ENSMUSG00000103119.1 ENSMUSG00000103119 ENSMUST00000195460 Gm37583 TEC Interval_27859 chr11 70451706 70452619 + 0 NA exon (ENSMUSG00000018923.13, exon 1 of 2) protein_coding-exon (ENSMUSG00000018923.13, exon 1 of 2) 230 ENSMUSG00000018923.13 ENSMUSG00000018923 ENSMUST00000152348 Med11 protein_coding Interval_29460 chr11 84127967 84128236 + 0 NA intron (ENSMUSG00000018651.14, intron 1 of 15) protein_coding-intron (ENSMUSG00000018651.14, intron 1 of 15) -1599 ENSMUSG00000020532.18 ENSMUSG00000020532 ENSMUST00000183887 Acaca protein_coding Interval_21029 chr10 123840562 123840903 + 0 NA Intergenic Intergenic 51166 ENSMUSG00000112603.1 ENSMUSG00000112603 ENSMUST00000219335 Gm18510 processed_pseudogene Interval_87688 chr19 55051975 55052475 + 0 NA Intergenic Intergenic -47277 ENSMUSG00000118099.1 ENSMUSG00000118099 ENSMUST00000237370 Gm31356 antisense Interval_115046 chr4 88841690 88841930 + 0 NA promoter-TSS (ENSMUSG00000070904.4) protein_coding-promoter-TSS (ENSMUSG00000070904.4) -51 ENSMUSG00000070904.4 ENSMUSG00000070904 ENSMUST00000094973 Ifna4 protein_coding Interval_136279 chr6 52476758 52477457 + 0 NA Intergenic Intergenic -15344 ENSMUSG00000107895.1 ENSMUSG00000107895 ENSMUST00000203771 1700094M24Rik lincRNA Interval_166106 chr9 56689878 56690067 + 0 NA intron (ENSMUSG00000049556.5, intron 2 of 2) protein_coding-intron (ENSMUSG00000049556.5, intron 3 of 3) 79151 ENSMUSG00000049556.5 ENSMUSG00000049556 ENSMUST00000210995 Lingo1 protein_coding Interval_133290 chr5 151233103 151234314 + 0 NA promoter-TSS (ENSMUSG00000016128.14) protein_coding-promoter-TSS (ENSMUSG00000016128.14) -18597 ENSMUSG00000107387.1 ENSMUSG00000107387 ENSMUST00000202597 5430435K18Rik lincRNA Interval_25881 chr11 52320296 52320623 + 0 NA Intergenic Intergenic 44404 ENSMUSG00000086395.1 ENSMUSG00000086395 ENSMUST00000150973 A630014C17Rik antisense Interval_16702 chr10 67106544 67108109 + 0 NA intron (ENSMUSG00000037876.17, intron 1 of 9) protein_coding-intron (ENSMUSG00000037876.17, intron 1 of 1) -70004 ENSMUSG00000019873.8 ENSMUSG00000019873 ENSMUST00000219431 Reep3 protein_coding Interval_101650 chr3 8541163 8541935 + 0 NA intron (ENSMUSG00000027500.10, intron 1 of 1) protein_coding-intron (ENSMUSG00000027500.10, intron 1 of 4) 31963 ENSMUSG00000027500.10 ENSMUSG00000027500 ENSMUST00000194307 Stmn2 protein_coding Interval_57188 chr15 7242381 7242623 + 0 NA exon (ENSMUSG00000042961.13, exon 14 of 22) protein_coding-exon (ENSMUSG00000042961.13, exon 14 of 22) 12266 ENSMUSG00000042961.13 ENSMUSG00000042961 ENSMUST00000159726 Egflam protein_coding Interval_82769 chr18 76972152 76972457 + 0 NA TTS (ENSMUSG00000025421.15) protein_coding-TTS (ENSMUSG00000025421.15) 27920 ENSMUSG00000025421.15 ENSMUSG00000025421 ENSMUST00000148955 Hdhd2 protein_coding Interval_162408 chr8 128121296 128121608 + 0 NA Intergenic Intergenic 156773 ENSMUSG00000099326.1 ENSMUSG00000099326 ENSMUST00000184910 Mir21c miRNA Interval_77798 chr18 3718732 3719123 + 0 NA Intergenic Intergenic 51877 ENSMUSG00000088480.1 ENSMUSG00000088480 ENSMUST00000157855 Gm23643 snRNA Interval_127389 chr5 103673971 103674566 + 0 NA Intergenic Intergenic 16031 ENSMUSG00000088121.1 ENSMUSG00000088121 ENSMUST00000157496 Gm25721 snRNA Interval_57298 chr15 8594461 8596050 + 0 NA Intergenic Intergenic 59818 ENSMUSG00000103047.1 ENSMUSG00000103047 ENSMUST00000195237 Gm37310 TEC Interval_40431 chr12 104845386 104846433 + 0 NA intron (ENSMUSG00000021097.15, intron 1 of 14) protein_coding-intron (ENSMUSG00000021097.15, intron 1 of 12) -11462 ENSMUSG00000021101.2 ENSMUSG00000021101 ENSMUST00000021520 4930408O17Rik lincRNA Interval_64909 chr16 17144151 17144803 + 0 NA promoter-TSS (ENSMUSG00000022768.17) protein_coding-promoter-TSS (ENSMUSG00000022768.17) -38 ENSMUSG00000022768.17 ENSMUSG00000022768 ENSMUST00000231597 Ccdc116 protein_coding Interval_162811 chr9 9372672 9372971 + 0 NA intron (ENSMUSG00000111061.1, intron 2 of 3) lincRNA-intron (ENSMUSG00000111061.1, intron 2 of 3) -61771 ENSMUSG00000111317.1 ENSMUSG00000111317 ENSMUST00000217395 Gm47333 processed_pseudogene Interval_174531 chrX 156955295 156955709 + 0 NA Intergenic Intergenic 62028 ENSMUSG00000085711.4 ENSMUSG00000085711 ENSMUST00000120749 Gm15163 processed_pseudogene Interval_142676 chr6 144963216 144963746 + 0 NA Intergenic Intergenic 74707 ENSMUSG00000088867.1 ENSMUSG00000088867 ENSMUST00000158242 Gm23071 rRNA Interval_11927 chr1 187233026 187233976 + 0 NA intron (ENSMUSG00000039210.16, intron 5 of 6) protein_coding-intron (ENSMUSG00000039210.16, intron 4 of 5) -2956 ENSMUSG00000104394.2 ENSMUSG00000104394 ENSMUST00000193542 Gm37254 TEC Interval_107606 chr3 108848161 108848407 + 0 NA Intergenic Intergenic -7769 ENSMUSG00000027882.18 ENSMUSG00000027882 ENSMUST00000106596 Stxbp3 protein_coding Interval_120897 chr4 151408566 151409373 + 0 NA intron (ENSMUSG00000014592.21, intron 5 of 24) protein_coding-intron (ENSMUSG00000014592.21, intron 5 of 23) 32499 ENSMUSG00000085593.1 ENSMUSG00000085593 ENSMUST00000129097 4930589P08Rik antisense Interval_144282 chr7 24278213 24280893 + 0 NA Intergenic Intergenic -8756 ENSMUSG00000118444.1 ENSMUSG00000118444 ENSMUST00000238310 Gm50477 lincRNA Interval_62763 chr15 96698462 96701269 + 0 NA promoter-TSS (ENSMUSG00000022462.7) protein_coding-promoter-TSS (ENSMUSG00000022462.7) -308 ENSMUSG00000102385.1 ENSMUSG00000102385 ENSMUST00000192790 Gm38144 TEC Interval_156065 chr8 43305425 43307595 + 0 NA intron (ENSMUSG00000051176.6, intron 1 of 4) protein_coding-intron (ENSMUSG00000051176.6, intron 1 of 3) 426 ENSMUSG00000051176.6 ENSMUSG00000051176 ENSMUST00000082120 Zfp42 protein_coding Interval_584 chr1 8098984 8099201 + 0 NA Intergenic Intergenic 354399 ENSMUSG00000102647.1 ENSMUSG00000102647 ENSMUST00000192338 Gm38024 TEC Interval_72162 chr17 28358351 28359373 + 0 NA promoter-TSS (ENSMUSG00000037446.14) protein_coding-promoter-TSS (ENSMUSG00000037446.14) -2688 ENSMUSG00000037446.14 ENSMUSG00000037446 ENSMUST00000150341 Tulp1 protein_coding Interval_28858 chr11 78805637 78805941 + 0 NA Intergenic Intergenic -18598 ENSMUSG00000088748.1 ENSMUSG00000088748 ENSMUST00000158123 Gm23219 snRNA Interval_9605 chr1 160153617 160154066 + 0 NA promoter-TSS (ENSMUSG00000026725.17) protein_coding-promoter-TSS (ENSMUSG00000026725.17) -5953 ENSMUSG00000026725.17 ENSMUSG00000026725 ENSMUST00000131919 Tnn protein_coding Interval_44607 chr13 46677483 46678516 + 0 NA TTS (ENSMUSG00000069237.8) protein_coding-TTS (ENSMUSG00000069237.8) 6808 ENSMUSG00000069237.8 ENSMUSG00000069237 ENSMUST00000150376 Fam8a1 protein_coding Interval_125779 chr5 74092487 74093642 + 0 NA promoter-TSS (ENSMUSG00000106943.2) processed_transcript-promoter-TSS (ENSMUSG00000106943.2) 4 ENSMUSG00000106943.2 ENSMUSG00000106943 ENSMUST00000117249 Dancr processed_transcript Interval_139926 chr6 112788707 112789064 + 0 NA intron (ENSMUSG00000030257.16, intron 4 of 21) protein_coding-intron (ENSMUSG00000030257.16, intron 4 of 9) 40574 ENSMUSG00000030257.16 ENSMUSG00000030257 ENSMUST00000143475 Srgap3 protein_coding Interval_154669 chr8 22475901 22477746 + 0 NA promoter-TSS (ENSMUSG00000031534.15) protein_coding-promoter-TSS (ENSMUSG00000031534.15) 32 ENSMUSG00000031534.15 ENSMUSG00000031534 ENSMUST00000033935 Smim19 protein_coding Interval_17267 chr10 75439490 75439918 + 0 NA intron (ENSMUSG00000033427.14, intron 9 of 9) protein_coding-intron (ENSMUSG00000033427.14, intron 9 of 9) -2916 ENSMUSG00000084622.1 ENSMUSG00000084622 ENSMUST00000122673 Gm25545 misc_RNA Interval_6749 chr1 119166141 119168072 + 0 NA Intergenic Intergenic 9520 ENSMUSG00000096939.1 ENSMUSG00000096939 ENSMUST00000181691 Gm8321 processed_pseudogene Interval_10006 chr1 164916523 164916862 + 0 NA intron (ENSMUSG00000104117.5, intron 2 of 3) processed_transcript-intron (ENSMUSG00000104117.5, intron 2 of 3) 18835 ENSMUSG00000026573.7 ENSMUSG00000026573 ENSMUST00000027860 Xcl1 protein_coding Interval_34631 chr12 8227162 8227606 + 0 NA exon (ENSMUSG00000037669.15, exon 3 of 3) protein_coding-intron (ENSMUSG00000037669.15, intron 3 of 4) -18219 ENSMUSG00000112694.1 ENSMUSG00000112694 ENSMUST00000217927 Gm33037 antisense Interval_146075 chr7 43676858 43677700 + 0 NA exon (ENSMUSG00000038888.8, exon 3 of 3) protein_coding-exon (ENSMUSG00000038888.8, exon 3 of 3) 5263 ENSMUSG00000038888.8 ENSMUSG00000038888 ENSMUST00000038332 Ctu1 protein_coding Interval_174733 chrX 164357440 164358149 + 0 NA intron (ENSMUSG00000031379.13, intron 7 of 8) protein_coding-intron (ENSMUSG00000031379.13, intron 7 of 9) -33449 ENSMUSG00000031380.10 ENSMUSG00000031380 ENSMUST00000124851 Vegfd protein_coding Interval_169572 chr9 99214195 99214865 + 0 NA Intergenic Intergenic 6037 ENSMUSG00000101498.1 ENSMUSG00000101498 ENSMUST00000185530 Gm2950 processed_pseudogene Interval_131889 chr5 140610567 140612671 + 0 NA promoter-TSS (ENSMUSG00000029570.5) protein_coding-promoter-TSS (ENSMUSG00000029570.5) 110 ENSMUSG00000029570.5 ENSMUSG00000029570 ENSMUST00000199848 Lfng protein_coding Interval_15490 chr10 49021614 49022468 + 0 NA Intergenic Intergenic 72688 ENSMUSG00000111374.1 ENSMUSG00000111374 ENSMUST00000214664 Gm50490 processed_pseudogene Interval_156591 chr8 53807772 53808195 + 0 NA Intergenic Intergenic -103756 ENSMUSG00000110334.1 ENSMUSG00000110334 ENSMUST00000210505 Gm19921 processed_pseudogene Interval_85577 chr19 28763384 28765439 + 0 NA promoter-TSS (ENSMUSG00000090737.1) processed_pseudogene-promoter-TSS (ENSMUSG00000090737.1) -981 ENSMUSG00000090737.1 ENSMUSG00000090737 ENSMUST00000166459 Gm6788 processed_pseudogene Interval_159818 chr8 104061207 104062894 + 0 NA Intergenic Intergenic -9099 ENSMUSG00000110019.1 ENSMUSG00000110019 ENSMUST00000211125 Gm8748 processed_pseudogene Interval_93820 chr2 77200782 77201412 + 0 NA intron (ENSMUSG00000042272.17, intron 10 of 11) protein_coding-intron (ENSMUSG00000042272.17, intron 10 of 17) -1670 ENSMUSG00000042272.17 ENSMUSG00000042272 ENSMUST00000139021 Sestd1 protein_coding Interval_131446 chr5 137284106 137284687 + 0 NA intron (ENSMUSG00000105736.1, intron 1 of 3) lincRNA-intron (ENSMUSG00000105736.1, intron 1 of 3) -3887 ENSMUSG00000023328.14 ENSMUSG00000023328 ENSMUST00000137126 Ache protein_coding Interval_87543 chr19 53349497 53350523 + 0 NA intron (ENSMUSG00000025025.14, intron 3 of 5) protein_coding-intron (ENSMUSG00000025025.14, intron 3 of 5) 20549 ENSMUSG00000025025.14 ENSMUSG00000025025 ENSMUST00000237295 Mxi1 protein_coding Interval_147908 chr7 75415184 75416497 + 0 NA Intergenic Intergenic 5295 ENSMUSG00000108590.1 ENSMUSG00000108590 ENSMUST00000206460 Gm44962 processed_pseudogene Interval_114929 chr4 87119508 87120662 + 0 NA intron (ENSMUSG00000037996.17, intron 2 of 10) protein_coding-intron (ENSMUSG00000037996.17, intron 1 of 9) 110382 ENSMUSG00000037996.17 ENSMUSG00000037996 ENSMUST00000155361 Slc24a2 protein_coding Interval_105435 chr3 86277964 86278250 + 0 NA intron (ENSMUSG00000028080.16, intron 1 of 38) protein_coding-intron (ENSMUSG00000028080.16, intron 2 of 56) -2745 ENSMUSG00000077744.1 ENSMUSG00000077744 ENSMUST00000104556 Gm26343 snoRNA Interval_106769 chr3 100572828 100573064 + 0 NA intron (ENSMUSG00000008763.16, intron 12 of 12) protein_coding-intron (ENSMUSG00000008763.16, intron 12 of 12) 14581 ENSMUSG00000105824.1 ENSMUSG00000105824 ENSMUST00000197836 Gm43466 sense_intronic Interval_141795 chr6 134577231 134577729 + 0 NA Intergenic Intergenic 30201 ENSMUSG00000107728.1 ENSMUSG00000107728 ENSMUST00000204630 Gm38910 lincRNA Interval_102931 chr3 32911295 32911910 + 0 NA exon (ENSMUSG00000056900.13, exon 14 of 21) protein_coding-exon (ENSMUSG00000056900.13, exon 14 of 21) -30994 ENSMUSG00000081883.2 ENSMUSG00000081883 ENSMUST00000119937 Gm15574 processed_pseudogene Interval_66906 chr16 38447133 38447727 + 0 NA exon (ENSMUSG00000002844.9, exon 3 of 4) protein_coding-exon (ENSMUSG00000002844.9, exon 3 of 4) -4960 ENSMUSG00000097576.2 ENSMUSG00000097576 ENSMUST00000231660 D930030I03Rik antisense Interval_39165 chr12 85530989 85531381 + 0 NA intron (ENSMUSG00000114163.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000114163.1, intron 1 of 2) 1587 ENSMUSG00000114163.1 ENSMUSG00000114163 ENSMUST00000220590 Gm32296 lincRNA Interval_33123 chr11 114587916 114589260 + 0 NA Intergenic Intergenic -76020 ENSMUSG00000083769.1 ENSMUSG00000083769 ENSMUST00000120766 Gm11689 processed_pseudogene Interval_13204 chr10 13016666 13017022 + 0 NA Intergenic Intergenic 11501 ENSMUSG00000078348.4 ENSMUSG00000078348 ENSMUST00000105139 Sf3b5 protein_coding Interval_112495 chr4 41610383 41610715 + 0 NA intron (ENSMUSG00000061322.15, intron 10 of 19) protein_coding-intron (ENSMUSG00000061322.15, intron 10 of 19) -21095 ENSMUSG00000061322.15 ENSMUSG00000061322 ENSMUST00000119127 Dnaic1 protein_coding Interval_143623 chr7 13311326 13311886 + 0 NA TTS (ENSMUSG00000056394.17) protein_coding-TTS (ENSMUSG00000056394.17) -13049 ENSMUSG00000033847.15 ENSMUSG00000033847 ENSMUST00000043612 Pla2g4c protein_coding Interval_76998 chr17 85485344 85487319 + 0 NA Intergenic Intergenic -12302 ENSMUSG00000097803.1 ENSMUSG00000097803 ENSMUST00000181130 Rpl31-ps16 processed_pseudogene Interval_38424 chr12 78964125 78965250 + 0 NA TTS (ENSMUSG00000046157.13) protein_coding-TTS (ENSMUSG00000046157.13) 42653 ENSMUSG00000046157.13 ENSMUSG00000046157 ENSMUST00000173095 Tmem229b protein_coding Interval_99617 chr2 163617487 163617760 + 0 NA exon (ENSMUSG00000017679.16, exon 4 of 4) protein_coding-exon (ENSMUSG00000017679.16, exon 4 of 4) 15309 ENSMUSG00000017679.16 ENSMUSG00000017679 ENSMUST00000132904 Ttpal protein_coding Interval_63041 chr15 98785728 98786196 + 0 NA Intergenic Intergenic -3895 ENSMUSG00000022997.9 ENSMUSG00000022997 ENSMUST00000023734 Wnt1 protein_coding Interval_157527 chr8 71213113 71213336 + 0 NA Intergenic Intergenic -10725 ENSMUSG00000110664.1 ENSMUSG00000110664 ENSMUST00000212311 Aprt-ps processed_pseudogene Interval_142498 chr6 142884096 142884822 + 0 NA intron (ENSMUSG00000030283.7, intron 2 of 4) protein_coding-intron (ENSMUSG00000030283.7, intron 2 of 4) 70074 ENSMUSG00000072683.3 ENSMUSG00000072683 ENSMUST00000159599 Gm7457 processed_transcript Interval_63886 chr16 4267568 4268547 + 0 NA Intergenic Intergenic 37756 ENSMUSG00000089645.3 ENSMUSG00000089645 ENSMUST00000161633 Gm5766 transcribed_processed_pseudogene Interval_66169 chr16 32099075 32100298 + 0 NA promoter-TSS (ENSMUSG00000035790.15) protein_coding-promoter-TSS (ENSMUSG00000035790.15) 54 ENSMUSG00000023791.17 ENSMUSG00000023791 ENSMUST00000144216 Pigx protein_coding Interval_30714 chr11 96063884 96065105 + 0 NA intron (ENSMUSG00000014349.7, intron 1 of 6) protein_coding-intron (ENSMUSG00000014349.7, intron 1 of 6) 894 ENSMUSG00000014349.7 ENSMUSG00000014349 ENSMUST00000100528 Ube2z protein_coding Interval_171287 chr9 116070851 116071090 + 0 NA intron (ENSMUSG00000056880.12, intron 13 of 13) protein_coding-intron (ENSMUSG00000056880.12, intron 14 of 14) -29906 ENSMUSG00000080848.3 ENSMUSG00000080848 ENSMUST00000117563 Gm9385 processed_pseudogene Interval_130411 chr5 127427215 127427414 + 0 NA intron (ENSMUSG00000034324.16, intron 2 of 8) protein_coding-intron (ENSMUSG00000034324.16, intron 2 of 8) 118297 ENSMUSG00000104971.1 ENSMUSG00000104971 ENSMUST00000196548 9430087B13Rik TEC Interval_157808 chr8 73570646 73571083 + 0 NA Intergenic Intergenic 70641 ENSMUSG00000076199.1 ENSMUSG00000076199 ENSMUST00000102244 Gm23255 miRNA Interval_925 chr1 13215044 13215298 + 0 NA intron (ENSMUSG00000005886.14, intron 4 of 12) protein_coding-intron (ENSMUSG00000005886.14, intron 4 of 22) 21263 ENSMUSG00000103495.1 ENSMUSG00000103495 ENSMUST00000195811 Gm37409 TEC Interval_171797 chr9 121264450 121264662 + 0 NA intron (ENSMUSG00000040936.15, intron 4 of 36) protein_coding-intron (ENSMUSG00000040936.15, intron 4 of 33) -13220 ENSMUSG00000110863.1 ENSMUSG00000110863 ENSMUST00000215259 Gm34655 bidirectional_promoter_lncRNA Interval_92916 chr2 68484883 68485650 + 0 NA TTS (ENSMUSG00000088365.1) misc_RNA-TTS (ENSMUSG00000088365.1) 1123 ENSMUSG00000088365.1 ENSMUSG00000088365 ENSMUST00000157740 Gm26321 misc_RNA Interval_108985 chr3 133948263 133948472 + 0 NA intron (ENSMUSG00000097911.2, intron 1 of 2) antisense-intron (ENSMUSG00000097911.2, intron 1 of 2) -129849 ENSMUSG00000104645.1 ENSMUSG00000104645 ENSMUST00000200327 Gm30484 lincRNA Interval_163979 chr9 30208221 30208668 + 0 NA Intergenic Intergenic 40869 ENSMUSG00000111304.1 ENSMUSG00000111304 ENSMUST00000217527 Gm47677 lincRNA Interval_61235 chr15 80138392 80138666 + 0 NA intron (ENSMUSG00000022414.8, intron 1 of 1) protein_coding-intron (ENSMUSG00000022414.8, intron 1 of 10) 5402 ENSMUSG00000022414.8 ENSMUSG00000022414 ENSMUST00000229320 Tab1 protein_coding Interval_76751 chr17 83828309 83829379 + 0 NA Intergenic Intergenic 17945 ENSMUSG00000000673.9 ENSMUSG00000000673 ENSMUST00000234312 Haao protein_coding Interval_107602 chr3 108823161 108824016 + 0 NA TTS (ENSMUSG00000027882.18) protein_coding-TTS (ENSMUSG00000027882.18) 16927 ENSMUSG00000027882.18 ENSMUSG00000027882 ENSMUST00000106596 Stxbp3 protein_coding Interval_44160 chr13 41334036 41334459 + 0 NA intron (ENSMUSG00000021365.15, intron 2 of 3) protein_coding-intron (ENSMUSG00000021365.15, intron 3 of 7) -25724 ENSMUSG00000097373.1 ENSMUSG00000097373 ENSMUST00000180728 Gm26877 antisense Interval_6051 chr1 95039395 95039706 + 0 NA TTS (ENSMUSG00000089310.1) snoRNA-TTS (ENSMUSG00000089310.1) 493 ENSMUSG00000089310.1 ENSMUSG00000089310 ENSMUST00000158685 Gm23181 snoRNA Interval_4354 chr1 72936858 72937098 + 0 NA Intergenic Intergenic -62703 ENSMUSG00000026185.8 ENSMUSG00000026185 ENSMUST00000137339 Igfbp5 protein_coding Interval_146324 chr7 45343272 45343819 + 0 NA intron (ENSMUSG00000003863.18, intron 19 of 25) protein_coding-intron (ENSMUSG00000003863.18, intron 23 of 29) -2385 ENSMUSG00000003863.18 ENSMUSG00000003863 ENSMUST00000209424 Ppfia3 protein_coding Interval_149529 chr7 99359964 99361372 + 0 NA Intergenic Intergenic -7565 ENSMUSG00000070436.12 ENSMUSG00000070436 ENSMUST00000208292 Serpinh1 protein_coding Interval_49638 chr13 113718074 113718939 + 0 NA Intergenic Intergenic 43622 ENSMUSG00000114962.1 ENSMUSG00000114962 ENSMUST00000225360 Gm6343 processed_pseudogene Interval_19489 chr10 100152811 100153362 + 0 NA Intergenic Intergenic 8832 ENSMUSG00000095539.1 ENSMUSG00000095539 ENSMUST00000103846 Gm25287 miRNA Interval_108409 chr3 126764210 126764493 + 0 NA intron (ENSMUSG00000053819.16, intron 4 of 20) protein_coding-intron (ENSMUSG00000053819.16, intron 4 of 18) 18218 ENSMUSG00000105553.1 ENSMUSG00000105553 ENSMUST00000196636 Gm42514 TEC Interval_163430 chr9 21405778 21406719 + 0 NA TTS (ENSMUSG00000032178.14) protein_coding-TTS (ENSMUSG00000032178.14) 5472 ENSMUSG00000097665.1 ENSMUSG00000097665 ENSMUST00000181812 Gm16853 antisense Interval_90312 chr2 29716277 29717398 + 0 NA intron (ENSMUSG00000039844.20, intron 3 of 15) protein_coding-intron (ENSMUSG00000039844.20, intron 3 of 15) 21828 ENSMUSG00000048316.3 ENSMUSG00000048316 ENSMUST00000051212 Gm9823 pseudogene Interval_143259 chr7 4811749 4813368 + 0 NA promoter-TSS (ENSMUSG00000060860.8) protein_coding-promoter-TSS (ENSMUSG00000060860.8) -652 ENSMUSG00000060860.8 ENSMUSG00000060860 ENSMUST00000206669 Ube2s protein_coding Interval_4640 chr1 75607695 75607927 + 0 NA Intergenic Intergenic -16843 ENSMUSG00000082528.1 ENSMUSG00000082528 ENSMUST00000120832 Gm15182 processed_pseudogene Interval_32318 chr11 106896998 106897191 + 0 NA intron (ENSMUSG00000018363.16, intron 2 of 19) protein_coding-intron (ENSMUSG00000018363.16, intron 1 of 18) 23265 ENSMUSG00000018363.16 ENSMUSG00000018363 ENSMUST00000144027 Smurf2 protein_coding Interval_50331 chr14 11876643 11876939 + 0 NA intron (ENSMUSG00000021745.14, intron 2 of 3) protein_coding-intron (ENSMUSG00000021745.14, intron 2 of 29) 9197 ENSMUSG00000114431.1 ENSMUSG00000114431 ENSMUST00000224051 Gm48601 TEC Interval_105779 chr3 89285095 89286004 + 0 NA Intergenic Intergenic -5908 ENSMUSG00000027954.9 ENSMUSG00000027954 ENSMUST00000118860 Efna1 protein_coding Interval_72847 chr17 32563275 32564259 + 0 NA Intergenic Intergenic -14779 ENSMUSG00000117366.1 ENSMUSG00000117366 ENSMUST00000234662 Gm50036 unprocessed_pseudogene Interval_76878 chr17 84697391 84699882 + 0 NA intron (ENSMUSG00000024254.15, intron 12 of 12) protein_coding-intron (ENSMUSG00000024254.15, intron 12 of 12) 15505 ENSMUSG00000024254.15 ENSMUSG00000024254 ENSMUST00000171915 Abcg8 protein_coding Interval_54196 chr14 66161207 66161969 + 0 NA promoter-TSS (ENSMUSG00000059456.13) protein_coding-promoter-TSS (ENSMUSG00000059456.13) 26549 ENSMUSG00000022041.10 ENSMUSG00000022041 ENSMUST00000022620 Chrna2 protein_coding Interval_94627 chr2 92810723 92811210 + 0 NA Intergenic Intergenic 62343 ENSMUSG00000082700.1 ENSMUSG00000082700 ENSMUST00000121350 Gm13792 processed_pseudogene Interval_4812 chr1 79631696 79631961 + 0 NA intron (ENSMUSG00000054702.14, intron 1 of 4) protein_coding-intron (ENSMUSG00000054702.14, intron 1 of 4) -10794 ENSMUSG00000102235.1 ENSMUSG00000102235 ENSMUST00000195349 Gm37886 TEC Interval_118706 chr4 133292569 133294222 + 0 NA exon (ENSMUSG00000037622.14, exon 16 of 16) protein_coding-exon (ENSMUSG00000037622.14, exon 16 of 16) -12083 ENSMUSG00000083241.1 ENSMUSG00000083241 ENSMUST00000120792 Gm13259 processed_pseudogene Interval_72807 chr17 32281052 32281844 + 0 NA intron (ENSMUSG00000024002.18, intron 1 of 1) protein_coding-intron (ENSMUSG00000024002.18, intron 1 of 19) 2685 ENSMUSG00000024002.18 ENSMUSG00000024002 ENSMUST00000230982 Brd4 protein_coding Interval_75566 chr17 68158553 68158964 + 0 NA intron (ENSMUSG00000117243.1, intron 1 of 3) lincRNA-intron (ENSMUSG00000117243.1, intron 1 of 3) 14798 ENSMUSG00000117243.1 ENSMUSG00000117243 ENSMUST00000232839 Gm49944 lincRNA Interval_169528 chr9 98918907 98919565 + 0 NA exon (ENSMUSG00000111411.1, exon 1 of 1) processed_pseudogene-exon (ENSMUSG00000111411.1, exon 1 of 1) 258 ENSMUSG00000111411.1 ENSMUSG00000111411 ENSMUST00000216884 Gm33778 processed_pseudogene Interval_159175 chr8 91369249 91369459 + 0 NA intron (ENSMUSG00000055932.15, intron 1 of 6) protein_coding-intron (ENSMUSG00000055932.15, intron 1 of 8) 22591 ENSMUSG00000110233.1 ENSMUSG00000110233 ENSMUST00000209572 Gm45427 TEC Interval_458 chr1 5660213 5660619 + 0 NA Intergenic Intergenic -15671 ENSMUSG00000093015.1 ENSMUSG00000093015 ENSMUST00000175274 Gm22463 miRNA Interval_30820 chr11 96693126 96694358 + 0 NA intron (ENSMUSG00000057058.16, intron 4 of 7) protein_coding-intron (ENSMUSG00000057058.16, intron 4 of 11) -73060 ENSMUSG00000085242.1 ENSMUSG00000085242 ENSMUST00000124865 Gm11537 antisense Interval_29472 chr11 84216740 84217209 + 0 NA intron (ENSMUSG00000020532.18, intron 4 of 8) protein_coding-intron (ENSMUSG00000020532.18, intron 3 of 53) 27381 ENSMUSG00000103122.1 ENSMUSG00000103122 ENSMUST00000194891 Gm37391 TEC Interval_97778 chr2 143983103 143983803 + 0 NA promoter-TSS (ENSMUSG00000027422.15) protein_coding-promoter-TSS (ENSMUSG00000027422.15) -25808 ENSMUSG00000027422.15 ENSMUSG00000027422 ENSMUST00000037875 Rrbp1 protein_coding Interval_13470 chr10 18479316 18479907 + 0 NA intron (ENSMUSG00000039835.16, intron 2 of 6) protein_coding-intron (ENSMUSG00000039835.16, intron 2 of 6) 66453 ENSMUSG00000019853.6 ENSMUSG00000019853 ENSMUST00000214548 Hebp2 protein_coding Interval_76010 chr17 74332109 74332630 + 0 NA exon (ENSMUSG00000117150.1, exon 1 of 1) processed_pseudogene-exon (ENSMUSG00000117150.1, exon 1 of 1) 160 ENSMUSG00000117150.1 ENSMUSG00000117150 ENSMUST00000233861 Gm9351 processed_pseudogene Interval_173159 chrX 73678529 73679767 + 0 NA exon (ENSMUSG00000019558.14, exon 7 of 13) protein_coding-exon (ENSMUSG00000019558.14, exon 7 of 13) 3641 ENSMUSG00000019558.14 ENSMUSG00000019558 ENSMUST00000167828 Slc6a8 protein_coding Interval_24679 chr11 35852527 35853897 + 0 NA intron (ENSMUSG00000018849.6, intron 1 of 1) protein_coding-intron (ENSMUSG00000018849.6, intron 18 of 22) 342 ENSMUSG00000018849.6 ENSMUSG00000018849 ENSMUST00000127086 Wwc1 protein_coding Interval_75162 chr17 64209500 64209753 + 0 NA Intergenic Intergenic 111989 ENSMUSG00000080455.1 ENSMUSG00000080455 ENSMUST00000116805 Gm24194 miRNA Interval_282 KZ289081.1 112628 113042 + 0 NA NA NA NA NA Interval_55712 chr14 99245108 99245320 + 0 NA intron (ENSMUSG00000022064.10, intron 8 of 8) protein_coding-intron (ENSMUSG00000022064.10, intron 17 of 17) 46422 ENSMUSG00000100172.1 ENSMUSG00000100172 ENSMUST00000186660 Gm4412 processed_pseudogene Interval_51258 chr14 25576861 25577152 + 0 NA intron (ENSMUSG00000007817.15, intron 5 of 23) protein_coding-intron (ENSMUSG00000007817.15, intron 5 of 23) 42567 ENSMUSG00000093081.1 ENSMUSG00000093081 ENSMUST00000175340 Mir3075 miRNA Interval_163895 chr9 27781559 27782268 + 0 NA Intergenic Intergenic -9234 ENSMUSG00000062257.13 ENSMUSG00000062257 ENSMUST00000126845 Opcml protein_coding Interval_161962 chr8 124082591 124083084 + 0 NA intron (ENSMUSG00000092329.1, intron 1 of 15) protein_coding-intron (ENSMUSG00000092329.1, intron 1 of 15) -34425 ENSMUSG00000110704.1 ENSMUSG00000110704 ENSMUST00000212460 Gm45732 antisense Interval_18440 chr10 85965062 85965408 + 0 NA exon (ENSMUSG00000050108.12, exon 13 of 16) protein_coding-exon (ENSMUSG00000050108.12, exon 13 of 16) -9456 ENSMUSG00000001783.3 ENSMUSG00000001783 ENSMUST00000139413 Rtcb protein_coding Interval_52712 chr14 48867783 48867974 + 0 NA promoter-TSS (ENSMUSG00000115348.1) processed_pseudogene-promoter-TSS (ENSMUSG00000115348.1) -78 ENSMUSG00000115348.1 ENSMUSG00000115348 ENSMUST00000226324 Gm49155 processed_pseudogene Interval_6039 chr1 94356811 94357505 + 0 NA Intergenic Intergenic 112729 ENSMUSG00000100347.1 ENSMUSG00000100347 ENSMUST00000187459 Gm7895 processed_pseudogene Interval_132513 chr5 145654002 145654215 + 0 NA Intergenic Intergenic -20115 ENSMUSG00000106040.1 ENSMUSG00000106040 ENSMUST00000196626 Cyp3a63-ps unprocessed_pseudogene Interval_48225 chr13 97295137 97296043 + 0 NA Intergenic Intergenic 12407 ENSMUSG00000097932.2 ENSMUSG00000097932 ENSMUST00000181148 C430039J16Rik lincRNA Interval_160252 chr8 107476623 107477623 + 0 NA intron (ENSMUSG00000031930.11, intron 4 of 22) protein_coding-intron (ENSMUSG00000031930.11, intron 4 of 23) -32431 ENSMUSG00000110501.1 ENSMUSG00000110501 ENSMUST00000211879 Gm45900 processed_pseudogene Interval_73991 chr17 45901826 45902627 + 0 NA Intergenic Intergenic 16880 ENSMUSG00000117048.1 ENSMUSG00000117048 ENSMUST00000233085 Gm41584 lincRNA Interval_115739 chr4 103178359 103178775 + 0 NA intron (ENSMUSG00000028521.17, intron 9 of 9) protein_coding-intron (ENSMUSG00000028521.17, intron 11 of 11) 36236 ENSMUSG00000028521.17 ENSMUSG00000028521 ENSMUST00000154845 Slc35d1 protein_coding Interval_34059 chr11 120239689 120241119 + 0 NA intron (ENSMUSG00000039741.15, intron 2 of 27) protein_coding-intron (ENSMUSG00000039741.15, intron 2 of 27) -4282 ENSMUSG00000085501.1 ENSMUSG00000085501 ENSMUST00000136542 Gm11772 antisense Interval_155674 chr8 36016450 36016817 + 0 NA Intergenic Intergenic -9120 ENSMUSG00000098181.1 ENSMUSG00000098181 ENSMUST00000182321 Rps12-ps24 processed_pseudogene Interval_57690 chr15 15604126 15604399 + 0 NA Intergenic Intergenic -175732 ENSMUSG00000115266.1 ENSMUSG00000115266 ENSMUST00000226912 4930557F08Rik lincRNA Interval_14092 chr10 26890274 26890867 + 0 NA intron (ENSMUSG00000039031.16, intron 8 of 10) protein_coding-intron (ENSMUSG00000039031.16, intron 12 of 14) -59170 ENSMUSG00000112751.1 ENSMUSG00000112751 ENSMUST00000220276 Gm48084 antisense Interval_7355 chr1 130390555 130390762 + 0 NA intron (ENSMUSG00000026401.15, intron 7 of 7) protein_coding-intron (ENSMUSG00000026401.15, intron 9 of 9) 32082 ENSMUSG00000026401.15 ENSMUSG00000026401 ENSMUST00000136497 Cd55b protein_coding Interval_148991 chr7 90876250 90877451 + 0 NA intron (ENSMUSG00000052572.19, intron 5 of 27) protein_coding-intron (ENSMUSG00000052572.19, intron 5 of 27) 5247 ENSMUSG00000109242.1 ENSMUSG00000109242 ENSMUST00000208672 A930002H02Rik TEC Interval_32306 chr11 106805595 106806688 + 0 NA intron (ENSMUSG00000018372.13, intron 7 of 19) protein_coding-intron (ENSMUSG00000018372.13, intron 7 of 19) 9867 ENSMUSG00000084930.1 ENSMUSG00000084930 ENSMUST00000151282 Gm11706 antisense Interval_55396 chr14 86639947 86640584 + 0 NA Intergenic Intergenic 66920 ENSMUSG00000115306.1 ENSMUSG00000115306 ENSMUST00000226731 Gm49159 TEC Interval_126819 chr5 93162445 93162758 + 0 NA intron (ENSMUSG00000058013.11, intron 7 of 9) protein_coding-intron (ENSMUSG00000058013.11, intron 7 of 9) -14369 ENSMUSG00000107019.1 ENSMUSG00000107019 ENSMUST00000202150 Gm43682 TEC Interval_48446 chr13 99078601 99078856 + 0 NA exon (ENSMUSG00000100410.1, exon 5 of 6) lincRNA-exon (ENSMUSG00000100410.1, exon 5 of 6) 9193 ENSMUSG00000100410.1 ENSMUSG00000100410 ENSMUST00000189489 2310020H05Rik lincRNA Interval_11870 chr1 186597952 186598903 + 0 NA Intergenic Intergenic -39746 ENSMUSG00000103690.1 ENSMUSG00000103690 ENSMUST00000195454 A730004F24Rik lincRNA Interval_30668 chr11 95781522 95782290 + 0 NA intron (ENSMUSG00000075595.9, intron 5 of 6) protein_coding-intron (ENSMUSG00000075595.9, intron 5 of 6) 20415 ENSMUSG00000082981.1 ENSMUSG00000082981 ENSMUST00000120170 Polr2k-ps processed_pseudogene Interval_61206 chr15 79953612 79953912 + 0 NA intron (ENSMUSG00000053411.16, intron 1 of 5) protein_coding-intron (ENSMUSG00000053411.16, intron 1 of 5) -19932 ENSMUSG00000053411.16 ENSMUSG00000053411 ENSMUST00000177061 Cbx7 protein_coding Interval_22683 chr11 12969578 12969771 + 0 NA Intergenic Intergenic -27992 ENSMUSG00000084055.1 ENSMUSG00000084055 ENSMUST00000117869 Gm12004 processed_pseudogene Interval_92884 chr2 68117965 68118703 + 0 NA TTS (ENSMUSG00000034780.6) protein_coding-TTS (ENSMUSG00000034780.6) 36543 ENSMUSG00000081257.1 ENSMUSG00000081257 ENSMUST00000117875 Gm13607 processed_pseudogene Interval_99268 chr2 158560855 158562082 + 0 NA Intergenic Intergenic 48672 ENSMUSG00000074625.10 ENSMUSG00000074625 ENSMUST00000135838 Arhgap40 protein_coding Interval_150109 chr7 106689093 106689409 + 0 NA exon (ENSMUSG00000064223.4, exon 2 of 2) protein_coding-exon (ENSMUSG00000064223.4, exon 2 of 2) 1873 ENSMUSG00000064223.4 ENSMUSG00000064223 ENSMUST00000052535 Olfr694 protein_coding Interval_97704 chr2 142967152 142967952 + 0 NA Intergenic Intergenic 64587 ENSMUSG00000086504.1 ENSMUSG00000086504 ENSMUST00000124774 Kif16bos antisense Interval_154599 chr8 21988810 21989954 + 0 NA Intergenic Intergenic 19607 ENSMUSG00000017049.4 ENSMUSG00000017049 ENSMUST00000017193 Ccdc70 protein_coding Interval_66642 chr16 35816559 35818038 + 0 NA exon (ENSMUSG00000022849.5, exon 6 of 9) protein_coding-exon (ENSMUSG00000022849.5, exon 6 of 9) -8352 ENSMUSG00000097914.1 ENSMUSG00000097914 ENSMUST00000180485 Gm26838 antisense Interval_83483 chr18 86742230 86742446 + 0 NA Intergenic Intergenic 29290 ENSMUSG00000024647.14 ENSMUSG00000024647 ENSMUST00000169470 Cbln2 protein_coding Interval_91033 chr2 34580096 34580550 + 0 NA intron (ENSMUSG00000038696.14, intron 8 of 11) protein_coding-intron (ENSMUSG00000038696.14, intron 7 of 10) 15324 ENSMUSG00000081992.1 ENSMUSG00000081992 ENSMUST00000119822 Gm13408 processed_pseudogene Interval_159732 chr8 99634675 99635022 + 0 NA intron (ENSMUSG00000052479.5, intron 1 of 4) lincRNA-intron (ENSMUSG00000052479.5, intron 1 of 4) -29171 ENSMUSG00000083586.2 ENSMUSG00000083586 ENSMUST00000118240 Gm8688 unprocessed_pseudogene Interval_81073 chr18 53607416 53607660 + 0 NA Intergenic Intergenic -31568 ENSMUSG00000118362.1 ENSMUSG00000118362 ENSMUST00000235670 Gm19466 lincRNA Interval_16852 chr10 69270065 69270547 + 0 NA TTS (ENSMUSG00000019944.14) protein_coding-TTS (ENSMUSG00000019944.14) -41833 ENSMUSG00000112798.1 ENSMUSG00000112798 ENSMUST00000217861 Gm40685 lincRNA Interval_89101 chr2 16355636 16357736 + 0 NA promoter-TSS (ENSMUSG00000026748.13) protein_coding-promoter-TSS (ENSMUSG00000026748.13) -282010 ENSMUSG00000026748.13 ENSMUSG00000026748 ENSMUST00000126173 Plxdc2 protein_coding Interval_95339 chr2 106755925 106756154 + 0 NA intron (ENSMUSG00000016386.15, intron 2 of 2) protein_coding-intron (ENSMUSG00000016386.15, intron 3 of 6) -53296 ENSMUSG00000105886.1 ENSMUSG00000105886 ENSMUST00000200346 Gm22813 scaRNA Interval_117302 chr4 122849291 122850777 + 0 NA exon (ENSMUSG00000028657.14, exon 6 of 6) protein_coding-exon (ENSMUSG00000028657.14, exon 6 of 6) 13788 ENSMUSG00000028657.14 ENSMUSG00000028657 ENSMUST00000097902 Ppt1 protein_coding Interval_32085 chr11 105180630 105182555 + 0 NA promoter-TSS (ENSMUSG00000020694.17) protein_coding-promoter-TSS (ENSMUSG00000020694.17) -159 ENSMUSG00000099681.1 ENSMUSG00000099681 ENSMUST00000190120 1700052K11Rik antisense Interval_80075 chr18 37309003 37309881 + 0 NA exon (ENSMUSG00000045689.3, exon 1 of 1) protein_coding-exon (ENSMUSG00000045689.3, exon 1 of 1) 1987 ENSMUSG00000045689.3 ENSMUSG00000045689 ENSMUST00000056712 Pcdhb4 protein_coding Interval_97858 chr2 144478895 144479543 + 0 NA intron (ENSMUSG00000037259.15, intron 18 of 20) protein_coding-intron (ENSMUSG00000037259.15, intron 18 of 20) 14824 ENSMUSG00000083674.3 ENSMUSG00000083674 ENSMUST00000137929 Zfp133-ps transcribed_unitary_pseudogene Interval_129352 chr5 119388469 119388665 + 0 NA Intergenic Intergenic 91322 ENSMUSG00000084548.1 ENSMUSG00000084548 ENSMUST00000122599 n-R5s175 rRNA Interval_135928 chr6 48817959 48818232 + 0 NA promoter-TSS (ENSMUSG00000107574.1) processed_pseudogene-promoter-TSS (ENSMUSG00000107574.1) -929 ENSMUSG00000107574.1 ENSMUSG00000107574 ENSMUST00000204322 Gm17834 processed_pseudogene Interval_46055 chr13 60644064 60644324 + 0 NA intron (ENSMUSG00000021559.14, intron 2 of 26) protein_coding-intron (ENSMUSG00000021559.14, intron 2 of 26) 2404 ENSMUSG00000114277.1 ENSMUSG00000114277 ENSMUST00000225897 Gm48583 processed_pseudogene Interval_20836 chr10 121409585 121409880 + 0 NA TTS (ENSMUSG00000025795.8) protein_coding-TTS (ENSMUSG00000025795.8) 9019 ENSMUSG00000112209.1 ENSMUSG00000112209 ENSMUST00000218038 Gm18730 processed_pseudogene Interval_61405 chr15 81381721 81381937 + 0 NA intron (ENSMUSG00000022403.15, intron 5 of 11) protein_coding-intron (ENSMUSG00000022403.15, intron 5 of 11) 12774 ENSMUSG00000022403.15 ENSMUSG00000022403 ENSMUST00000169204 St13 protein_coding Interval_97063 chr2 130905839 130907194 + 0 NA promoter-TSS (ENSMUSG00000027312.14) protein_coding-promoter-TSS (ENSMUSG00000027312.14) -120 ENSMUSG00000085566.1 ENSMUSG00000085566 ENSMUST00000133766 A730017L22Rik processed_transcript Interval_101084 chr2 177494084 177494773 + 0 NA Intergenic Intergenic -3787 ENSMUSG00000094786.1 ENSMUSG00000094786 ENSMUST00000108940 Gm14403 protein_coding Interval_174804 chrX 167063780 167064188 + 0 NA intron (ENSMUSG00000086008.8, intron 3 of 3) lincRNA-intron (ENSMUSG00000086008.8, intron 4 of 4) 4405 ENSMUSG00000086008.8 ENSMUSG00000086008 ENSMUST00000171902 Gm8817 lincRNA Interval_75473 chr17 66940206 66941124 + 0 NA intron (ENSMUSG00000033278.10, intron 1 of 6) protein_coding-intron (ENSMUSG00000033278.10, intron 10 of 32) 3777 ENSMUSG00000033278.10 ENSMUSG00000033278 ENSMUST00000224862 Ptprm protein_coding Interval_108488 chr3 127605729 127606279 + 0 NA intron (ENSMUSG00000051278.12, intron 17 of 24) protein_coding-intron (ENSMUSG00000051278.12, intron 18 of 25) -27131 ENSMUSG00000027967.8 ENSMUSG00000027967 ENSMUST00000029587 Neurog2 protein_coding Interval_60918 chr15 77847619 77848429 + 0 NA Intergenic Intergenic -7268 ENSMUSG00000084497.1 ENSMUSG00000084497 ENSMUST00000122548 Gm22107 snRNA Interval_58312 chr15 32244066 32246650 + 0 NA promoter-TSS (ENSMUSG00000096956.2) lincRNA-promoter-TSS (ENSMUSG00000096956.2) 533 ENSMUSG00000022231.10 ENSMUSG00000022231 ENSMUST00000227429 Sema5a protein_coding Interval_57281 chr15 8385407 8386054 + 0 NA intron (ENSMUSG00000022141.7, intron 1 of 46) protein_coding-intron (ENSMUSG00000022141.7, intron 1 of 46) 58733 ENSMUSG00000022141.7 ENSMUSG00000022141 ENSMUST00000052965 Nipbl protein_coding Interval_25487 chr11 49148648 49148930 + 0 NA exon (ENSMUSG00000050763.4, exon 1 of 1) protein_coding-exon (ENSMUSG00000050763.4, exon 1 of 1) -5588 ENSMUSG00000048378.2 ENSMUSG00000048378 ENSMUST00000052668 Olfr1394 protein_coding Interval_79193 chr18 25555983 25556978 + 0 NA intron (ENSMUSG00000024268.16, intron 2 of 5) protein_coding-intron (ENSMUSG00000024268.16, intron 2 of 12) -41010 ENSMUSG00000114306.1 ENSMUSG00000114306 ENSMUST00000223994 Gm3227 antisense Interval_54127 chr14 65541332 65541637 + 0 NA intron (ENSMUSG00000022031.6, intron 14 of 14) protein_coding-intron (ENSMUSG00000022031.6, intron 14 of 14) 51568 ENSMUSG00000022031.6 ENSMUSG00000022031 ENSMUST00000224743 Elp3 protein_coding Interval_90702 chr2 32010005 32010292 + 0 NA promoter-TSS (ENSMUSG00000001855.15) protein_coding-promoter-TSS (ENSMUSG00000001855.15) 7196 ENSMUSG00000086192.1 ENSMUSG00000086192 ENSMUST00000141023 Gm13609 antisense Interval_7394 chr1 130876571 130876794 + 0 NA intron (ENSMUSG00000042474.6, intron 4 of 7) protein_coding-intron (ENSMUSG00000042474.6, intron 4 of 7) 10657 ENSMUSG00000026420.16 ENSMUSG00000026420 ENSMUST00000188148 Il24 protein_coding Interval_116641 chr4 116245828 116246858 + 0 NA intron (ENSMUSG00000028698.13, intron 2 of 3) protein_coding-intron (ENSMUSG00000028698.13, intron 1 of 9) 24725 ENSMUSG00000028698.13 ENSMUSG00000028698 ENSMUST00000106490 Pik3r3 protein_coding Interval_88900 chr2 12388832 12389367 + 0 NA TTS (ENSMUSG00000104406.1) TEC-TTS (ENSMUSG00000104406.1) 3384 ENSMUSG00000104406.1 ENSMUSG00000104406 ENSMUST00000193349 Gm38014 TEC Interval_97118 chr2 131416268 131417243 + 0 NA Intergenic Intergenic -1510 ENSMUSG00000081652.1 ENSMUSG00000081652 ENSMUST00000119763 Gm14283 processed_pseudogene Interval_51802 chr14 32309744 32310264 + 0 NA intron (ENSMUSG00000115691.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000115691.1, intron 1 of 1) 7981 ENSMUSG00000115691.1 ENSMUSG00000115691 ENSMUST00000226980 Gm48914 lincRNA Interval_146486 chr7 46288239 46288575 + 0 NA exon (ENSMUSG00000009487.10, exon 36 of 56) protein_coding-exon (ENSMUSG00000009487.10, exon 36 of 56) 47404 ENSMUSG00000009487.10 ENSMUSG00000009487 ENSMUST00000209802 Otog protein_coding Interval_64171 chr16 8822249 8824112 + 0 NA Intergenic Intergenic -8141 ENSMUSG00000022507.6 ENSMUSG00000022507 ENSMUST00000229318 1810013L24Rik protein_coding Interval_19670 chr10 107643322 107643636 + 0 NA exon (ENSMUSG00000035916.8, exon 22 of 45) protein_coding-exon (ENSMUSG00000035916.8, exon 22 of 45) 76548 ENSMUSG00000035916.8 ENSMUSG00000035916 ENSMUST00000218399 Ptprq protein_coding Interval_158334 chr8 81767414 81767599 + 0 NA promoter-TSS (ENSMUSG00000037940.17) protein_coding-promoter-TSS (ENSMUSG00000037940.17) 23402 ENSMUSG00000090584.1 ENSMUSG00000090584 ENSMUST00000171382 Gm17169 processed_pseudogene Interval_47714 chr13 91648189 91650200 + 0 NA intron (ENSMUSG00000003992.15, intron 5 of 10) protein_coding-intron (ENSMUSG00000003992.15, intron 5 of 16) -74062 ENSMUSG00000077278.1 ENSMUSG00000077278 ENSMUST00000104090 Gm22778 snoRNA Interval_111584 chr4 23972538 23972825 + 0 NA Intergenic Intergenic -38727 ENSMUSG00000100395.1 ENSMUSG00000100395 ENSMUST00000188547 Gm28448 lincRNA Interval_37698 chr12 71187963 71189612 + 0 NA exon (ENSMUSG00000034601.17, exon 23 of 28) protein_coding-exon (ENSMUSG00000034601.17, exon 23 of 28) 16657 ENSMUSG00000113878.1 ENSMUSG00000113878 ENSMUST00000222488 Gm19045 processed_pseudogene Interval_18489 chr10 86684749 86686206 + 0 NA promoter-TSS (ENSMUSG00000097412.2) transcribed_unprocessed_pseudogene-promoter-TSS (ENSMUSG00000097412.2) -134 ENSMUSG00000097412.2 ENSMUSG00000097412 ENSMUST00000218536 1810014B01Rik transcribed_unprocessed_pseudogene Interval_81245 chr18 56722855 56723287 + 0 NA intron (ENSMUSG00000024590.8, intron 1 of 10) protein_coding-intron (ENSMUSG00000024590.8, intron 1 of 10) -5370 ENSMUSG00000024590.8 ENSMUSG00000024590 ENSMUST00000128651 Lmnb1 protein_coding Interval_33861 chr11 119054704 119054979 + 0 NA Intergenic Intergenic -13930 ENSMUSG00000025578.9 ENSMUSG00000025578 ENSMUST00000143831 Cbx8 protein_coding Interval_128797 chr5 115317011 115318206 + 0 NA TTS (ENSMUSG00000086368.2) lincRNA-TTS (ENSMUSG00000086368.2) -9787 ENSMUSG00000029538.14 ENSMUSG00000029538 ENSMUST00000149510 Srsf9 protein_coding Interval_139819 chr6 109153916 109154143 + 0 NA Intergenic Intergenic 28344 ENSMUSG00000107501.1 ENSMUSG00000107501 ENSMUST00000203862 Gm29781 processed_pseudogene Interval_88545 chr2 5995304 5996153 + 0 NA intron (ENSMUSG00000043241.14, intron 8 of 21) protein_coding-intron (ENSMUSG00000043241.14, intron 8 of 21) -54699 ENSMUSG00000043241.14 ENSMUSG00000043241 ENSMUST00000144901 Upf2 protein_coding Interval_170881 chr9 111513220 111513980 + 0 NA Intergenic Intergenic 35340 ENSMUSG00000106647.1 ENSMUSG00000106647 ENSMUST00000199378 Gm42523 lincRNA Interval_99588 chr2 163394366 163395291 + 0 NA intron (ENSMUSG00000017817.11, intron 2 of 6) protein_coding-intron (ENSMUSG00000017817.11, intron 1 of 5) 3165 ENSMUSG00000017817.11 ENSMUSG00000017817 ENSMUST00000109425 Jph2 protein_coding Interval_108433 chr3 127161690 127162917 + 0 NA promoter-TSS (ENSMUSG00000032826.19) protein_coding-promoter-TSS (ENSMUSG00000032826.19) 965 ENSMUSG00000097456.7 ENSMUSG00000097456 ENSMUST00000181792 Gm16958 antisense Interval_44051 chr13 40545404 40545997 + 0 NA Intergenic Intergenic 12130 ENSMUSG00000114215.1 ENSMUSG00000114215 ENSMUST00000223887 Gm47038 processed_pseudogene Interval_104741 chr3 69961917 69962996 + 0 NA promoter-TSS (ENSMUSG00000077366.1) snoRNA-promoter-TSS (ENSMUSG00000077366.1) -11 ENSMUSG00000077366.1 ENSMUSG00000077366 ENSMUST00000104178 Gm23484 snoRNA Interval_147043 chr7 59250494 59250827 + 0 NA exon (ENSMUSG00000109536.1, exon 1 of 1) TEC-exon (ENSMUSG00000109536.1, exon 1 of 1) 4128 ENSMUSG00000109536.1 ENSMUSG00000109536 ENSMUST00000208498 9330162G02Rik TEC Interval_145427 chr7 34699649 34700339 + 0 NA intron (ENSMUSG00000060402.8, intron 2 of 2) protein_coding-intron (ENSMUSG00000060402.8, intron 2 of 3) -25995 ENSMUSG00000087127.1 ENSMUSG00000087127 ENSMUST00000126294 Gm12756 lincRNA Interval_146581 chr7 47020929 47021326 + 0 NA Intergenic Intergenic -12892 ENSMUSG00000049516.9 ENSMUSG00000049516 ENSMUST00000208588 Spty2d1 protein_coding Interval_25393 chr11 47309102 47309471 + 0 NA intron (ENSMUSG00000020354.15, intron 2 of 6) protein_coding-intron (ENSMUSG00000020354.15, intron 2 of 7) -232146 ENSMUSG00000082792.1 ENSMUSG00000082792 ENSMUST00000121420 Gm12176 processed_pseudogene Interval_164097 chr9 31456904 31457805 + 0 NA intron (ENSMUSG00000041737.8, intron 1 of 5) protein_coding-intron (ENSMUSG00000041737.8, intron 1 of 5) -6552 ENSMUSG00000111655.1 ENSMUSG00000111655 ENSMUST00000214381 4930434F21Rik bidirectional_promoter_lncRNA Interval_25233 chr11 45738302 45739216 + 0 NA Intergenic Intergenic -69328 ENSMUSG00000086686.1 ENSMUSG00000086686 ENSMUST00000137002 F630206G17Rik processed_transcript Interval_1705 chr1 31701537 31701803 + 0 NA Intergenic Intergenic -34387 ENSMUSG00000082159.2 ENSMUSG00000082159 ENSMUST00000117896 Gm7910 processed_pseudogene Interval_151515 chr7 123209460 123210080 + 0 NA Intergenic Intergenic 38124 ENSMUSG00000052707.8 ENSMUSG00000052707 ENSMUST00000206126 Tnrc6a protein_coding Interval_42242 chr13 10710591 10711013 + 0 NA intron (ENSMUSG00000114134.1, intron 1 of 1) antisense-intron (ENSMUSG00000097009.2, intron 4 of 7) 10641 ENSMUSG00000114134.1 ENSMUSG00000114134 ENSMUST00000221855 Gm47408 lincRNA Interval_7682 chr1 133024938 133026155 + 0 NA promoter-TSS (ENSMUSG00000054387.13) protein_coding-promoter-TSS (ENSMUSG00000054387.13) -189 ENSMUSG00000054387.13 ENSMUSG00000054387 ENSMUST00000186645 Mdm4 protein_coding Interval_108204 chr3 122467696 122468196 + 0 NA intron (ENSMUSG00000028121.8, intron 3 of 11) protein_coding-intron (ENSMUSG00000028121.8, intron 3 of 11) 3219 ENSMUSG00000087743.1 ENSMUSG00000087743 ENSMUST00000157118 Gm25153 snRNA Interval_96111 chr2 119827856 119829250 + 0 NA Intergenic Intergenic 29226 ENSMUSG00000027298.17 ENSMUSG00000027298 ENSMUST00000137135 Tyro3 protein_coding Interval_22952 chr11 17916231 17918568 + 0 NA Intergenic Intergenic 36476 ENSMUSG00000016984.7 ENSMUSG00000016984 ENSMUST00000076661 Etaa1 protein_coding Interval_127538 chr5 104913591 104915310 + 0 NA Intergenic Intergenic -22201 ENSMUSG00000096561.1 ENSMUSG00000096561 ENSMUST00000178720 Gm24097 snRNA Interval_108857 chr3 132746997 132747629 + 0 NA intron (ENSMUSG00000028030.12, intron 20 of 25) protein_coding-intron (ENSMUSG00000028030.12, intron 20 of 23) -20094 ENSMUSG00000105719.1 ENSMUSG00000105719 ENSMUST00000200026 Gm42872 TEC Interval_58882 chr15 39681181 39681440 + 0 NA intron (ENSMUSG00000037386.16, intron 23 of 23) protein_coding-intron (ENSMUSG00000037386.16, intron 26 of 26) -64624 ENSMUSG00000022303.9 ENSMUSG00000022303 ENSMUST00000227792 Dcstamp protein_coding Interval_48575 chr13 100416813 100417045 + 0 NA TTS (ENSMUSG00000051723.7) processed_pseudogene-TTS (ENSMUSG00000051723.7) 1364 ENSMUSG00000051723.7 ENSMUSG00000051723 ENSMUST00000060994 Rpl31-ps13 processed_pseudogene Interval_9707 chr1 161180456 161181218 + 0 NA intron (ENSMUSG00000102817.2, intron 2 of 25) transcribed_unprocessed_pseudogene-intron (ENSMUSG00000102817.2, intron 2 of 25) -19972 ENSMUSG00000102817.2 ENSMUSG00000102817 ENSMUST00000212885 Gm6185 transcribed_unprocessed_pseudogene Interval_7784 chr1 133663766 133664934 + 0 NA Intergenic Intergenic -2970 ENSMUSG00000116275.1 ENSMUSG00000116275 ENSMUST00000027736 Zc3h11a protein_coding Interval_170751 chr9 110529034 110529474 + 0 NA Intergenic Intergenic -13957 ENSMUSG00000104983.1 ENSMUSG00000104983 ENSMUST00000199595 Gm42763 TEC Interval_88234 chr19 60888950 60890732 + 0 NA promoter-TSS (ENSMUSG00000003228.9) protein_coding-promoter-TSS (ENSMUSG00000003228.9) -622 ENSMUSG00000003228.9 ENSMUSG00000003228 ENSMUST00000236876 Grk5 protein_coding Interval_8102 chr1 135734881 135735168 + 0 NA intron (ENSMUSG00000026421.14, intron 1 of 5) protein_coding-intron (ENSMUSG00000026421.14, intron 1 of 5) 14963 ENSMUSG00000026421.14 ENSMUSG00000026421 ENSMUST00000027677 Csrp1 protein_coding Interval_85299 chr19 24494455 24495091 + 0 NA intron (ENSMUSG00000024867.14, intron 1 of 3) protein_coding-intron (ENSMUSG00000024867.14, intron 1 of 14) -17417 ENSMUSG00000074922.1 ENSMUSG00000074922 ENSMUST00000099556 Fam122a protein_coding Interval_31115 chr11 98228520 98228762 + 0 NA intron (ENSMUSG00000003119.14, intron 6 of 13) protein_coding-intron (ENSMUSG00000003119.14, intron 6 of 12) -9977 ENSMUSG00000098827.1 ENSMUSG00000098827 ENSMUST00000184250 Gm27399 miRNA Interval_152758 chr7 137301364 137301926 + 0 NA intron (ENSMUSG00000010476.14, intron 6 of 6) protein_coding-intron (ENSMUSG00000010476.14, intron 6 of 15) 12341 ENSMUSG00000010476.14 ENSMUSG00000010476 ENSMUST00000209864 Ebf3 protein_coding Interval_143264 chr7 4842447 4845378 + 0 NA intron (ENSMUSG00000053550.13, intron 1 of 4) protein_coding-intron (ENSMUSG00000053550.13, intron 1 of 5) -12785 ENSMUSG00000053550.13 ENSMUSG00000053550 ENSMUST00000132806 Shisa7 protein_coding Interval_28446 chr11 75935807 75936500 + 0 NA intron (ENSMUSG00000020847.15, intron 1 of 5) protein_coding-intron (ENSMUSG00000020847.15, intron 1 of 5) 2276 ENSMUSG00000020847.15 ENSMUSG00000020847 ENSMUST00000152035 Rph3al protein_coding Interval_44057 chr13 40625840 40626053 + 0 NA Intergenic Intergenic 18703 ENSMUSG00000114322.1 ENSMUSG00000114322 ENSMUST00000225346 Gm47041 TEC Interval_8540 chr1 141140304 141140812 + 0 NA Intergenic Intergenic 116599 ENSMUSG00000095238.2 ENSMUSG00000095238 ENSMUST00000179202 Gm4845 processed_pseudogene Interval_131071 chr5 134932248 134934080 + 0 NA intron (ENSMUSG00000040557.14, intron 2 of 5) protein_coding-intron (ENSMUSG00000040557.14, intron 2 of 5) 640 ENSMUSG00000040557.14 ENSMUSG00000040557 ENSMUST00000148286 Mettl27 protein_coding Interval_94464 chr2 91410579 91411126 + 0 NA intron (ENSMUSG00000040591.18, intron 1 of 7) protein_coding-intron (ENSMUSG00000040591.18, intron 2 of 8) -3716 ENSMUSG00000080507.2 ENSMUSG00000080507 ENSMUST00000116857 Gm22071 miRNA Interval_145090 chr7 29972308 29973057 + 0 NA Intergenic Intergenic -7117 ENSMUSG00000083669.5 ENSMUSG00000083669 ENSMUST00000121822 Mif-ps processed_pseudogene Interval_165202 chr9 45256261 45257686 + 0 NA intron (ENSMUSG00000032089.16, intron 5 of 5) protein_coding-intron (ENSMUSG00000032089.16, intron 6 of 6) -4082 ENSMUSG00000093722.1 ENSMUSG00000093722 ENSMUST00000176318 Gm20612 processed_pseudogene Interval_121180 chr4 153854030 153854696 + 0 NA Intergenic Intergenic -22021 ENSMUSG00000077519.1 ENSMUSG00000077519 ENSMUST00000104331 Gm25880 snoRNA Interval_137212 chr6 70114766 70115025 + 0 NA Intergenic Intergenic 2725 ENSMUSG00000076577.2 ENSMUSG00000076577 ENSMUST00000103378 Igkv8-30 IG_V_gene Interval_94415 chr2 91060676 91061662 + 0 NA TTS (ENSMUSG00000002105.15) protein_coding-TTS (ENSMUSG00000002105.15) 6891 ENSMUSG00000002102.15 ENSMUSG00000002102 ENSMUST00000145317 Psmc3 protein_coding Interval_20248 chr10 116427772 116428781 + 0 NA intron (ENSMUSG00000054934.10, intron 2 of 2) protein_coding-intron (ENSMUSG00000054934.10, intron 2 of 2) 10224 ENSMUSG00000020164.7 ENSMUSG00000020164 ENSMUST00000134586 Kcnmb4os1 antisense Interval_87743 chr19 55567028 55567633 + 0 NA intron (ENSMUSG00000024983.10, intron 8 of 8) protein_coding-intron (ENSMUSG00000024983.10, intron 7 of 7) -174934 ENSMUSG00000024985.20 ENSMUSG00000024985 ENSMUST00000148666 Tcf7l2 protein_coding Interval_165738 chr9 52042633 52042878 + 0 NA Intergenic Intergenic -5416 ENSMUSG00000032050.18 ENSMUSG00000032050 ENSMUST00000061352 Rdx protein_coding Interval_134644 chr6 30123814 30126690 + 0 NA intron (ENSMUSG00000058440.14, intron 8 of 8) protein_coding-intron (ENSMUSG00000058440.14, intron 8 of 9) 18875 ENSMUSG00000065343.1 ENSMUSG00000065343 ENSMUST00000083409 Gm25580 misc_RNA Interval_81011 chr18 52873942 52874266 + 0 NA intron (ENSMUSG00000024534.15, intron 5 of 11) protein_coding-intron (ENSMUSG00000024534.15, intron 5 of 11) 36140 ENSMUSG00000024534.15 ENSMUSG00000024534 ENSMUST00000179689 Sncaip protein_coding Interval_70479 chr17 10500352 10501806 + 0 NA intron (ENSMUSG00000089941.1, intron 1 of 1) protein_coding-intron (ENSMUSG00000037196.6, intron 4 of 4) 4633 ENSMUSG00000089941.1 ENSMUSG00000089941 ENSMUST00000161091 Gm16168 antisense Interval_112687 chr4 44071860 44073132 + 0 NA exon (ENSMUSG00000028479.18, exon 1 of 12) protein_coding-exon (ENSMUSG00000028479.18, exon 1 of 12) 8904 ENSMUSG00000088532.1 ENSMUSG00000088532 ENSMUST00000157907 Gm22706 snRNA Interval_145350 chr7 34159154 34159355 + 0 NA intron (ENSMUSG00000052997.15, intron 1 of 5) protein_coding-intron (ENSMUSG00000052997.15, intron 5 of 16) 5087 ENSMUSG00000052997.15 ENSMUSG00000052997 ENSMUST00000206651 Uba2 protein_coding Interval_110151 chr3 153798398 153798636 + 0 NA Intergenic Intergenic -6430 ENSMUSG00000062046.1 ENSMUSG00000062046 ENSMUST00000081193 5730460C07Rik lincRNA Interval_118457 chr4 131772296 131772569 + 0 NA exon (ENSMUSG00000028909.17, exon 26 of 26) protein_coding-exon (ENSMUSG00000028909.17, exon 26 of 26) 25938 ENSMUSG00000028909.17 ENSMUSG00000028909 ENSMUST00000139641 Ptpru protein_coding Interval_74781 chr17 56505076 56505502 + 0 NA Intergenic Intergenic 7142 ENSMUSG00000044526.3 ENSMUSG00000044526 ENSMUST00000052211 Znrf4 protein_coding Interval_25331 chr11 46427704 46428808 + 0 NA Intergenic Intergenic -8705 ENSMUSG00000020397.15 ENSMUSG00000020397 ENSMUST00000133635 Med7 protein_coding Interval_145817 chr7 39544079 39545370 + 0 NA exon (ENSMUSG00000104150.2, exon 1 of 1) TEC-exon (ENSMUSG00000104150.2, exon 1 of 1) 182 ENSMUSG00000104150.2 ENSMUSG00000104150 ENSMUST00000191753 Gm44573 TEC Interval_126757 chr5 92656397 92657028 + 0 NA intron (ENSMUSG00000050050.17, intron 9 of 9) protein_coding-intron (ENSMUSG00000050050.17, intron 9 of 24) -12828 ENSMUSG00000050050.17 ENSMUSG00000050050 ENSMUST00000150359 Ccdc158 protein_coding Interval_113981 chr4 62250557 62251363 + 0 NA Intergenic Intergenic -11602 ENSMUSG00000066152.11 ENSMUSG00000066152 ENSMUST00000107467 Slc31a2 protein_coding Interval_136880 chr6 62575745 62576654 + 0 NA Intergenic Intergenic -5871 ENSMUSG00000108160.1 ENSMUSG00000108160 ENSMUST00000205036 Gm19237 processed_pseudogene Interval_36687 chr12 52005995 52007520 + 0 NA promoter-TSS (ENSMUSG00000020956.14) protein_coding-promoter-TSS (ENSMUSG00000020956.14) -256 ENSMUSG00000020956.14 ENSMUSG00000020956 ENSMUST00000021339 Dtd2 protein_coding Interval_96935 chr2 129677339 129678211 + 0 NA Intergenic Intergenic 22069 ENSMUSG00000027400.11 ENSMUSG00000027400 ENSMUST00000152113 Pdyn protein_coding Interval_79635 chr18 34136422 34137822 + 0 NA Intergenic Intergenic -11405 ENSMUSG00000118054.1 ENSMUSG00000118054 ENSMUST00000238048 Gm5238 processed_pseudogene Interval_70712 chr17 13758814 13761845 + 0 NA promoter-TSS (ENSMUSG00000038347.15) protein_coding-promoter-TSS (ENSMUSG00000038347.15) -245 ENSMUSG00000038347.15 ENSMUSG00000038347 ENSMUST00000155166 Tcte2 protein_coding Interval_65295 chr16 21302633 21302859 + 0 NA Intergenic Intergenic -5874 ENSMUSG00000096918.2 ENSMUSG00000096918 ENSMUST00000181476 Gm16863 lincRNA Interval_165271 chr9 45954301 45955744 + 0 NA promoter-TSS (ENSMUSG00000034908.16) protein_coding-promoter-TSS (ENSMUSG00000034908.16) 921 ENSMUSG00000111329.1 ENSMUSG00000111329 ENSMUST00000216147 A830035O19Rik antisense Interval_162180 chr8 125727391 125728501 + 0 NA Intergenic Intergenic -7889 ENSMUSG00000031851.14 ENSMUSG00000031851 ENSMUST00000152189 Ntpcr protein_coding Interval_118376 chr4 130971484 130971854 + 0 NA Intergenic Intergenic -3121 ENSMUSG00000085804.1 ENSMUSG00000085804 ENSMUST00000143967 Gm12973 lincRNA Interval_148293 chr7 80334563 80335113 + 0 NA exon (ENSMUSG00000030533.16, exon 7 of 20) protein_coding-exon (ENSMUSG00000030533.16, exon 7 of 20) 5333 ENSMUSG00000030533.16 ENSMUSG00000030533 ENSMUST00000206494 Unc45a protein_coding Interval_17713 chr10 79707748 79708105 + 0 NA intron (ENSMUSG00000023175.15, intron 1 of 6) protein_coding-intron (ENSMUSG00000023175.15, intron 1 of 7) -2179 ENSMUSG00000023175.15 ENSMUSG00000023175 ENSMUST00000180235 Bsg protein_coding Interval_102866 chr3 32379666 32380366 + 0 NA Intergenic Intergenic -7027 ENSMUSG00000102825.1 ENSMUSG00000102825 ENSMUST00000191961 Gm36990 TEC Interval_40683 chr12 107183501 107183959 + 0 NA intron (ENSMUSG00000084871.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000084871.1, intron 1 of 1) 175 ENSMUSG00000084871.1 ENSMUSG00000084871 ENSMUST00000122988 Gm2800 lincRNA Interval_170126 chr9 105123259 105124340 + 0 NA Intergenic Intergenic 7981 ENSMUSG00000032565.9 ENSMUSG00000032565 ENSMUST00000186925 Nudt16 protein_coding Interval_16633 chr10 66593961 66594212 + 0 NA Intergenic Intergenic -46832 ENSMUSG00000101338.1 ENSMUSG00000101338 ENSMUST00000189480 Gm28139 lincRNA Interval_121298 chr4 154802616 154802820 + 0 NA Intergenic Intergenic -34741 ENSMUSG00000046637.3 ENSMUSG00000046637 ENSMUST00000137684 Ttc34 protein_coding Interval_35108 chr12 17356749 17357709 + 0 NA intron (ENSMUSG00000061458.9, intron 5 of 20) protein_coding-intron (ENSMUSG00000061458.9, intron 5 of 20) 1837 ENSMUSG00000093037.1 ENSMUSG00000093037 ENSMUST00000175296 Mir3066 miRNA Interval_137065 chr6 67111228 67112144 + 0 NA Intergenic Intergenic -3991 ENSMUSG00000097603.3 ENSMUSG00000097603 ENSMUST00000054470 A430010J10Rik processed_transcript Interval_52019 chr14 34643572 34646855 + 0 NA Intergenic Intergenic -16494 ENSMUSG00000115575.1 ENSMUSG00000115575 ENSMUST00000227643 Gm49024 lincRNA Interval_75083 chr17 63145288 63146147 + 0 NA intron (ENSMUSG00000023965.13, intron 4 of 5) protein_coding-intron (ENSMUSG00000023965.13, intron 7 of 8) -48717 ENSMUSG00000089586.1 ENSMUSG00000089586 ENSMUST00000158961 Gm25348 rRNA Interval_17793 chr10 80121575 80122090 + 0 NA intron (ENSMUSG00000003068.17, intron 1 of 10) protein_coding-intron (ENSMUSG00000003068.17, intron 1 of 9) -4850 ENSMUSG00000003068.17 ENSMUSG00000003068 ENSMUST00000152592 Stk11 protein_coding Interval_153102 chr7 141363159 141363985 + 0 NA TTS (ENSMUSG00000025504.14) protein_coding-TTS (ENSMUSG00000025504.14) 1510 ENSMUSG00000086844.1 ENSMUSG00000086844 ENSMUST00000129373 B230206H07Rik processed_transcript Interval_113549 chr4 56410963 56411189 + 0 NA Intergenic Intergenic 23274 ENSMUSG00000082613.1 ENSMUSG00000082613 ENSMUST00000122075 Gm12518 processed_pseudogene Interval_51475 chr14 27948322 27949301 + 0 NA intron (ENSMUSG00000040640.11, intron 6 of 7) protein_coding-intron (ENSMUSG00000040640.11, intron 6 of 15) -72594 ENSMUSG00000109849.1 ENSMUSG00000109849 ENSMUST00000211470 Gm45645 antisense Interval_103678 chr3 51572697 51574276 + 0 NA Intergenic Intergenic -2063 ENSMUSG00000104001.1 ENSMUSG00000104001 ENSMUST00000195060 Gm38334 processed_pseudogene Interval_13014 chr10 9269336 9269539 + 0 NA Intergenic Intergenic -44686 ENSMUSG00000112543.1 ENSMUSG00000112543 ENSMUST00000218588 Gm48744 TEC Interval_74574 chr17 53502409 53502913 + 0 NA intron (ENSMUSG00000017831.8, intron 5 of 5) protein_coding-intron (ENSMUSG00000017831.8, intron 5 of 5) -1715 ENSMUSG00000117128.1 ENSMUSG00000117128 ENSMUST00000232747 Gm49915 antisense Interval_140382 chr6 117699812 117700508 + 0 NA intron (ENSMUSG00000099869.6, intron 3 of 3) lincRNA-intron (ENSMUSG00000099869.6, intron 3 of 3) -16313 ENSMUSG00000104222.1 ENSMUSG00000104222 ENSMUST00000195277 Gm7292 lincRNA Interval_101875 chr3 10329322 10329535 + 0 NA intron (ENSMUSG00000027531.16, intron 1 of 7) protein_coding-intron (ENSMUSG00000027531.16, intron 1 of 8) 6228 ENSMUSG00000058921.3 ENSMUSG00000058921 ENSMUST00000078748 Slc10a5 protein_coding Interval_82267 chr18 69781698 69783105 + 0 NA Intergenic Intergenic -4356 ENSMUSG00000064706.1 ENSMUSG00000064706 ENSMUST00000082772 Gm22508 misc_RNA Interval_86167 chr19 37509643 37510188 + 0 NA Intergenic Intergenic -10964 ENSMUSG00000053799.8 ENSMUSG00000053799 ENSMUST00000238817 Exoc6 protein_coding Interval_150068 chr7 105580698 105581810 + 0 NA promoter-TSS (ENSMUSG00000037032.16) protein_coding-promoter-TSS (ENSMUSG00000037032.16) -14111 ENSMUSG00000037032.16 ENSMUSG00000037032 ENSMUST00000188726 Apbb1 protein_coding Interval_79127 chr18 24812562 24813657 + 0 NA intron (ENSMUSG00000034295.10, intron 3 of 24) protein_coding-intron (ENSMUSG00000034295.10, intron 3 of 26) 51946 ENSMUSG00000088920.1 ENSMUSG00000088920 ENSMUST00000158295 Gm24294 misc_RNA Interval_52373 chr14 45462456 45464338 + 0 NA intron (ENSMUSG00000037712.16, intron 12 of 14) protein_coding-intron (ENSMUSG00000037712.16, intron 12 of 14) -1752 ENSMUSG00000088769.1 ENSMUSG00000088769 ENSMUST00000158144 Gm22637 misc_RNA Interval_106615 chr3 97767419 97768525 + 0 NA promoter-TSS (ENSMUSG00000038170.15) protein_coding-promoter-TSS (ENSMUSG00000038170.15) 37443 ENSMUSG00000105245.1 ENSMUSG00000105245 ENSMUST00000200435 Gm31305 antisense Interval_146339 chr7 45405168 45407247 + 0 NA exon (ENSMUSG00000038201.10, exon 1 of 2) protein_coding-exon (ENSMUSG00000038201.10, exon 1 of 2) 554 ENSMUSG00000038201.10 ENSMUSG00000038201 ENSMUST00000107774 Kcna7 protein_coding Interval_38928 chr12 83881999 83882784 + 0 NA intron (ENSMUSG00000021224.15, intron 1 of 8) protein_coding-intron (ENSMUSG00000021224.15, intron 1 of 12) -6509 ENSMUSG00000113423.1 ENSMUSG00000113423 ENSMUST00000220790 Gm3791 processed_pseudogene Interval_2686 chr1 43445155 43447118 + 0 NA intron (ENSMUSG00000066877.11, intron 1 of 4) protein_coding-intron (ENSMUSG00000066877.11, intron 1 of 4) 36552 ENSMUSG00000101923.1 ENSMUSG00000101923 ENSMUST00000189199 Gm29041 processed_pseudogene Interval_78918 chr18 21591364 21591671 + 0 NA intron (ENSMUSG00000042514.11, intron 3 of 8) protein_coding-intron (ENSMUSG00000042514.11, intron 2 of 7) -59931 ENSMUSG00000043168.12 ENSMUSG00000043168 ENSMUST00000139804 4930426D05Rik antisense Interval_32622 chr11 109227088 109227283 + 0 NA exon (ENSMUSG00000020599.13, exon 18 of 19) protein_coding-exon (ENSMUSG00000020599.13, exon 18 of 19) 19780 ENSMUSG00000020599.13 ENSMUSG00000020599 ENSMUST00000106704 Rgs9 protein_coding Interval_3216 chr1 54951717 54952963 + 0 NA Intergenic Intergenic -35746 ENSMUSG00000102642.1 ENSMUSG00000102642 ENSMUST00000193052 A130048G24Rik TEC Interval_54652 chr14 72869141 72870214 + 0 NA Intergenic Intergenic -28433 ENSMUSG00000115611.1 ENSMUSG00000115611 ENSMUST00000228906 Gm4606 transcribed_processed_pseudogene Interval_33499 chr11 116900415 116900639 + 0 NA Intergenic Intergenic 46449 ENSMUSG00000020818.16 ENSMUSG00000020818 ENSMUST00000134106 Mfsd11 protein_coding Interval_145239 chr7 30847674 30848690 + 0 NA Intergenic Intergenic 7985 ENSMUSG00000019429.7 ENSMUSG00000019429 ENSMUST00000185748 Ffar3 protein_coding Interval_50622 chr14 16755150 16756491 + 0 NA intron (ENSMUSG00000017491.9, intron 1 of 3) protein_coding-intron (ENSMUSG00000017491.9, intron 1 of 3) -179993 ENSMUSG00000017491.9 ENSMUSG00000017491 ENSMUST00000225245 Rarb protein_coding Interval_139134 chr6 95718079 95719290 + 0 NA intron (ENSMUSG00000061838.7, intron 1 of 10) protein_coding-intron (ENSMUSG00000061838.7, intron 1 of 1) -61216 ENSMUSG00000061838.7 ENSMUSG00000061838 ENSMUST00000203109 Suclg2 protein_coding Interval_15772 chr10 56385627 56386716 + 0 NA intron (ENSMUSG00000050953.10, intron 1 of 1) protein_coding-intron (ENSMUSG00000050953.10, intron 1 of 1) 8722 ENSMUSG00000050953.10 ENSMUSG00000050953 ENSMUST00000220069 Gja1 protein_coding Interval_110446 chr3 158248293 158248496 + 0 NA intron (ENSMUSG00000028176.13, intron 7 of 24) protein_coding-intron (ENSMUSG00000028176.13, intron 8 of 27) 41525 ENSMUSG00000104647.1 ENSMUSG00000104647 ENSMUST00000199292 Gm43485 TEC Interval_23230 chr11 20715771 20715999 + 0 NA intron (ENSMUSG00000049659.15, intron 2 of 7) protein_coding-intron (ENSMUSG00000049659.15, intron 2 of 8) -13535 ENSMUSG00000084252.1 ENSMUSG00000084252 ENSMUST00000120008 Gm12036 processed_pseudogene Interval_141237 chr6 126166906 126167252 + 0 NA promoter-TSS (ENSMUSG00000049107.13) protein_coding-promoter-TSS (ENSMUSG00000049107.13) -2119 ENSMUSG00000049107.13 ENSMUSG00000049107 ENSMUST00000050484 Ntf3 protein_coding Interval_16097 chr10 60724447 60725083 + 0 NA promoter-TSS (ENSMUSG00000020100.15) protein_coding-promoter-TSS (ENSMUSG00000020100.15) 28018 ENSMUSG00000020100.15 ENSMUSG00000020100 ENSMUST00000144989 Slc29a3 protein_coding Interval_172278 chrX 12264389 12264684 + 0 NA Intergenic Intergenic -84469 ENSMUSG00000083486.1 ENSMUSG00000083486 ENSMUST00000119545 Gm14521 processed_pseudogene Interval_93238 chr2 71376339 71378834 + 0 NA Intergenic Intergenic -10053 ENSMUSG00000027010.16 ENSMUSG00000027010 ENSMUST00000146653 Slc25a12 protein_coding Interval_28613 chr11 77159287 77160119 + 0 NA intron (ENSMUSG00000050944.14, intron 2 of 17) protein_coding-intron (ENSMUSG00000050944.14, intron 2 of 17) 9213 ENSMUSG00000050944.14 ENSMUSG00000050944 ENSMUST00000155085 Efcab5 protein_coding Interval_170435 chr9 107957168 107957653 + 0 NA exon (ENSMUSG00000032586.9, exon 4 of 4) protein_coding-exon (ENSMUSG00000032586.9, exon 4 of 4) -4823 ENSMUSG00000032586.9 ENSMUSG00000032586 ENSMUST00000195803 Traip protein_coding Interval_124512 chr5 49876184 49876391 + 0 NA Intergenic Intergenic 26015 ENSMUSG00000105540.1 ENSMUSG00000105540 ENSMUST00000196623 Gm7988 processed_pseudogene Interval_127114 chr5 100373583 100374250 + 0 NA promoter-TSS (ENSMUSG00000035325.16) protein_coding-promoter-TSS (ENSMUSG00000035325.16) 18697 ENSMUSG00000035325.16 ENSMUSG00000035325 ENSMUST00000182144 Sec31a protein_coding Interval_12309 chr1 191574826 191576261 + 0 NA promoter-TSS (ENSMUSG00000037474.13) protein_coding-promoter-TSS (ENSMUSG00000037474.13) -29 ENSMUSG00000037474.13 ENSMUSG00000037474 ENSMUST00000192014 Dtl protein_coding Interval_9878 chr1 163709973 163710809 + 0 NA intron (ENSMUSG00000040113.14, intron 2 of 3) protein_coding-intron (ENSMUSG00000040113.14, intron 2 of 3) 14841 ENSMUSG00000040113.14 ENSMUSG00000040113 ENSMUST00000160495 Mettl11b protein_coding Interval_50037 chr13 119880857 119882093 + 0 NA Intergenic Intergenic 3183 ENSMUSG00000104162.1 ENSMUSG00000104162 ENSMUST00000193219 Gm37619 processed_pseudogene Interval_48578 chr13 100443334 100443576 + 0 NA intron (ENSMUSG00000021640.6, intron 4 of 15) protein_coding-intron (ENSMUSG00000021640.6, intron 3 of 14) 9409 ENSMUSG00000021640.6 ENSMUSG00000021640 ENSMUST00000221727 Naip1 protein_coding Interval_153183 chr7 142206831 142207635 + 0 NA Intergenic Intergenic -4626 ENSMUSG00000073786.1 ENSMUSG00000073786 ENSMUST00000097943 Gm7579 protein_coding Interval_113851 chr4 59360667 59361148 + 0 NA intron (ENSMUSG00000038578.15, intron 10 of 16) protein_coding-intron (ENSMUSG00000038578.15, intron 10 of 16) 7959 ENSMUSG00000083979.1 ENSMUSG00000083979 ENSMUST00000117967 Gm12527 processed_pseudogene Interval_94654 chr2 93053543 93053892 + 0 NA Intergenic Intergenic -8146 ENSMUSG00000075028.12 ENSMUSG00000075028 ENSMUST00000147339 Prdm11 protein_coding Interval_147672 chr7 71465793 71466054 + 0 NA Intergenic Intergenic 114472 ENSMUSG00000099558.1 ENSMUSG00000099558 ENSMUST00000190004 Gm29295 lincRNA Interval_38846 chr12 83320056 83320591 + 0 NA intron (ENSMUSG00000021221.15, intron 5 of 10) protein_coding-intron (ENSMUSG00000021221.15, intron 3 of 6) 167393 ENSMUSG00000021221.15 ENSMUSG00000021221 ENSMUST00000177801 Dpf3 protein_coding Interval_14069 chr10 26480362 26480582 + 0 NA Intergenic Intergenic -12626 ENSMUSG00000112797.1 ENSMUSG00000112797 ENSMUST00000219589 Gm30034 lincRNA Interval_128706 chr5 114826079 114826774 + 0 NA Intergenic Intergenic 2789 ENSMUSG00000082052.1 ENSMUSG00000082052 ENSMUST00000117738 Ywhaq-ps2 processed_pseudogene Interval_136502 chr6 54974607 54975093 + 0 NA TTS (ENSMUSG00000077501.1) snoRNA-TTS (ENSMUSG00000077501.1) 199 ENSMUSG00000077501.1 ENSMUSG00000077501 ENSMUST00000104313 Gm24230 snoRNA Interval_45948 chr13 59574603 59574826 + 0 NA intron (ENSMUSG00000021557.15, intron 1 of 4) protein_coding-intron (ENSMUSG00000021557.15, intron 1 of 4) -10706 ENSMUSG00000021555.15 ENSMUSG00000021555 ENSMUST00000172118 Naa35 protein_coding Interval_4760 chr1 78454203 78455112 + 0 NA intron (ENSMUSG00000026245.16, intron 15 of 16) protein_coding-intron (ENSMUSG00000026245.16, intron 15 of 16) 12269 ENSMUSG00000104018.1 ENSMUSG00000104018 ENSMUST00000195509 4833412K13Rik TEC Interval_41848 chr13 3477657 3478996 + 0 NA promoter-TSS (ENSMUSG00000097709.8) lincRNA-promoter-TSS (ENSMUSG00000097709.8) 59 ENSMUSG00000097709.8 ENSMUSG00000097709 ENSMUST00000188642 2810429I04Rik lincRNA Interval_148704 chr7 84355235 84356417 + 0 NA intron (ENSMUSG00000015709.9, intron 3 of 19) protein_coding-intron (ENSMUSG00000015709.9, intron 2 of 18) 12085 ENSMUSG00000015709.9 ENSMUSG00000015709 ENSMUST00000208863 Arnt2 protein_coding Interval_96181 chr2 120336751 120337090 + 0 NA intron (ENSMUSG00000027291.15, intron 10 of 17) protein_coding-intron (ENSMUSG00000027291.15, intron 10 of 24) 16201 ENSMUSG00000027291.15 ENSMUSG00000027291 ENSMUST00000126526 Vps39 protein_coding Interval_113977 chr4 62228158 62229858 + 0 NA intron (ENSMUSG00000028389.12, intron 2 of 2) protein_coding-intron (ENSMUSG00000028389.12, intron 2 of 2) -20806 ENSMUSG00000028389.12 ENSMUSG00000028389 ENSMUST00000212325 Zfp37 protein_coding Interval_51138 chr14 24073532 24073857 + 0 NA intron (ENSMUSG00000114722.1, intron 1 of 3) lincRNA-intron (ENSMUSG00000114722.1, intron 1 of 3) 2214 ENSMUSG00000114722.1 ENSMUSG00000114722 ENSMUST00000224007 Gm31392 lincRNA Interval_135902 chr6 48562767 48563684 + 0 NA intron (ENSMUSG00000073096.11, intron 2 of 2) protein_coding-intron (ENSMUSG00000073096.11, intron 1 of 1) -1140 ENSMUSG00000118619.1 ENSMUSG00000118619 ENSMUST00000239256 AC154013.1 unitary_pseudogene Interval_99012 chr2 156663989 156665002 + 0 NA intron (ENSMUSG00000061689.15, intron 1 of 12) protein_coding-intron (ENSMUSG00000061689.15, intron 1 of 12) -31027 ENSMUSG00000083498.1 ENSMUSG00000083498 ENSMUST00000118255 Gm14172 processed_pseudogene Interval_78505 chr18 13790478 13790749 + 0 NA intron (ENSMUSG00000024420.9, intron 2 of 5) protein_coding-intron (ENSMUSG00000024420.9, intron 5 of 7) 85713 ENSMUSG00000024420.9 ENSMUSG00000024420 ENSMUST00000234025 Zfp521 protein_coding Interval_117219 chr4 120692729 120693041 + 0 NA Intergenic Intergenic 26313 ENSMUSG00000070803.6 ENSMUSG00000070803 ENSMUST00000094814 Cited4 protein_coding Interval_139866 chr6 112119289 112119604 + 0 NA Intergenic Intergenic -31252 ENSMUSG00000107893.1 ENSMUSG00000107893 ENSMUST00000204195 Gm44192 TEC Interval_5070 chr1 84787007 84788423 + 0 NA intron (ENSMUSG00000026219.14, intron 1 of 6) protein_coding-intron (ENSMUSG00000026219.14, intron 3 of 40) 21475 ENSMUSG00000103505.1 ENSMUSG00000103505 ENSMUST00000194417 Gm38374 TEC Interval_14316 chr10 30786172 30786419 + 0 NA intron (ENSMUSG00000039697.16, intron 1 of 6) protein_coding-intron (ENSMUSG00000039697.16, intron 1 of 15) -4024 ENSMUSG00000110744.1 ENSMUSG00000110744 ENSMUST00000214944 Gm5171 processed_pseudogene Interval_40248 chr12 102733344 102733619 + 0 NA intron (ENSMUSG00000098530.1, intron 1 of 1) protein_coding-intron (ENSMUSG00000098530.1, intron 1 of 1) -6148 ENSMUSG00000096751.3 ENSMUSG00000096751 ENSMUST00000178129 Gm28373 processed_transcript Interval_101391 chr2 180991479 180991855 + 0 NA intron (ENSMUSG00000016356.18, intron 2 of 35) protein_coding-intron (ENSMUSG00000016356.18, intron 2 of 36) 5132 ENSMUSG00000016356.18 ENSMUSG00000016356 ENSMUST00000155425 Col20a1 protein_coding Interval_105617 chr3 88148621 88151259 + 0 NA intron (ENSMUSG00000001419.17, intron 1 of 1) protein_coding-intron (ENSMUSG00000001419.17, intron 1 of 10) -18312 ENSMUSG00000001419.17 ENSMUSG00000001419 ENSMUST00000152861 Mef2d protein_coding Interval_5838 chr1 92378854 92379324 + 0 NA Intergenic Intergenic 51443 ENSMUSG00000101522.1 ENSMUSG00000101522 ENSMUST00000190873 Gm7837 processed_pseudogene Interval_74063 chr17 46336652 46336902 + 0 NA Intergenic Intergenic -8801 ENSMUSG00000032842.13 ENSMUSG00000032842 ENSMUST00000170168 Abcc10 protein_coding Interval_29499 chr11 84470264 84470435 + 0 NA intron (ENSMUSG00000018697.14, intron 8 of 8) protein_coding-intron (ENSMUSG00000018697.14, intron 8 of 12) 43173 ENSMUSG00000018697.14 ENSMUSG00000018697 ENSMUST00000148434 Aatf protein_coding Interval_70245 chr17 7204885 7207392 + 0 NA intron (ENSMUSG00000023809.10, intron 1 of 20) protein_coding-intron (ENSMUSG00000023809.10, intron 1 of 20) 36011 ENSMUSG00000023809.10 ENSMUSG00000023809 ENSMUST00000231530 Rps6ka2 protein_coding Interval_136124 chr6 51345280 51345695 + 0 NA Intergenic Intergenic -34223 ENSMUSG00000107660.1 ENSMUSG00000107660 ENSMUST00000204678 Gm6559 lincRNA Interval_86216 chr19 37857973 37859015 + 0 NA Intergenic Intergenic -11776 ENSMUSG00000118115.1 ENSMUSG00000118115 ENSMUST00000237198 Gm4757 processed_pseudogene Interval_55845 chr14 101430315 101430747 + 0 NA Intergenic Intergenic 86987 ENSMUSG00000115538.1 ENSMUSG00000115538 ENSMUST00000227762 Hspd1-ps5 processed_pseudogene Interval_121064 chr4 152541328 152541566 + 0 NA intron (ENSMUSG00000039577.17, intron 15 of 28) protein_coding-intron (ENSMUSG00000039577.17, intron 15 of 28) 63269 ENSMUSG00000039577.17 ENSMUSG00000039577 ENSMUST00000123635 Nphp4 protein_coding Interval_19074 chr10 94249141 94250246 + 0 NA Intergenic Intergenic 49010 ENSMUSG00000053420.6 ENSMUSG00000053420 ENSMUST00000065826 Gm4792 protein_coding Interval_772 chr1 10839612 10840007 + 0 NA Intergenic Intergenic -28879 ENSMUSG00000100648.1 ENSMUSG00000100648 ENSMUST00000188013 Gm28659 processed_pseudogene Interval_101223 chr2 179578266 179579093 + 0 NA intron (ENSMUSG00000000305.12, intron 2 of 2) protein_coding-intron (ENSMUSG00000000305.12, intron 2 of 15) 34888 ENSMUSG00000083410.1 ENSMUSG00000083410 ENSMUST00000120800 Gm14300 processed_pseudogene Interval_166792 chr9 62748941 62749764 + 0 NA intron (ENSMUSG00000032243.8, intron 10 of 27) protein_coding-intron (ENSMUSG00000032243.8, intron 10 of 29) -40552 ENSMUSG00000111537.1 ENSMUSG00000111537 ENSMUST00000214567 Gm7653 processed_pseudogene Interval_161786 chr8 122768933 122769171 + 0 NA intron (ENSMUSG00000092329.1, intron 1 of 15) protein_coding-intron (ENSMUSG00000092329.1, intron 1 of 15) -6291 ENSMUSG00000110682.1 ENSMUSG00000110682 ENSMUST00000212247 A530010L16Rik lincRNA Interval_133624 chr6 7738313 7738572 + 0 NA Intergenic Intergenic -27952 ENSMUSG00000107394.1 ENSMUSG00000107394 ENSMUST00000203458 1700012J15Rik lincRNA Interval_62922 chr15 97932139 97933212 + 0 NA Intergenic Intergenic -2610 ENSMUSG00000089233.1 ENSMUSG00000089233 ENSMUST00000158608 Gm22202 misc_RNA Interval_123401 chr5 32221806 32222441 + 0 NA Intergenic Intergenic -10585 ENSMUSG00000029134.14 ENSMUSG00000029134 ENSMUST00000202687 Plb1 protein_coding Interval_80745 chr18 46760787 46760987 + 0 NA exon (ENSMUSG00000117429.1, exon 1 of 1) TEC-exon (ENSMUSG00000117429.1, exon 1 of 1) 2330 ENSMUSG00000117429.1 ENSMUSG00000117429 ENSMUST00000234279 A430019L02Rik TEC Interval_163329 chr9 20901600 20902269 + 0 NA Intergenic Intergenic -3352 ENSMUSG00000070319.6 ENSMUSG00000070319 ENSMUST00000216133 Eif3g protein_coding Interval_153694 chr8 4651975 4652462 + 0 NA exon (ENSMUSG00000109448.1, exon 1 of 1) processed_pseudogene-exon (ENSMUSG00000109448.1, exon 1 of 1) 154 ENSMUSG00000109448.1 ENSMUSG00000109448 ENSMUST00000208203 Gm45224 processed_pseudogene Interval_10839 chr1 175893330 175893728 + 0 NA intron (ENSMUSG00000039748.11, intron 1 of 4) protein_coding-intron (ENSMUSG00000039748.11, intron 8 of 14) -11016 ENSMUSG00000094820.1 ENSMUSG00000094820 ENSMUST00000180129 Gm23805 snRNA Interval_103286 chr3 38082068 38083102 + 0 NA Intergenic Intergenic 25337 ENSMUSG00000105359.1 ENSMUSG00000105359 ENSMUST00000071237 Rpl21-ps10 processed_pseudogene Interval_128017 chr5 110297176 110298178 + 0 NA intron (ENSMUSG00000007080.14, intron 13 of 23) protein_coding-intron (ENSMUSG00000007080.14, intron 14 of 48) -11656 ENSMUSG00000029499.11 ENSMUSG00000029499 ENSMUST00000126882 Pxmp2 protein_coding Interval_168535 chr9 83270468 83270900 + 0 NA Intergenic Intergenic -16662 ENSMUSG00000098747.7 ENSMUSG00000098747 ENSMUST00000184080 Gm27216 lincRNA Interval_146967 chr7 56419410 56420015 + 0 NA intron (ENSMUSG00000030450.11, intron 20 of 22) protein_coding-intron (ENSMUSG00000030450.11, intron 21 of 23) -176562 ENSMUSG00000108773.1 ENSMUSG00000108773 ENSMUST00000206278 Gm44506 antisense Interval_88656 chr2 8857854 8858053 + 0 NA Intergenic Intergenic 184531 ENSMUSG00000082953.3 ENSMUSG00000082953 ENSMUST00000120466 Gm13217 unprocessed_pseudogene Interval_171668 chr9 120039559 120039748 + 0 NA intron (ENSMUSG00000052336.7, intron 2 of 2) protein_coding-intron (ENSMUSG00000052336.7, intron 2 of 2) -19838 ENSMUSG00000079243.4 ENSMUSG00000079243 ENSMUST00000238557 Xirp1 protein_coding Interval_14188 chr10 28526526 28527377 + 0 NA intron (ENSMUSG00000019889.10, intron 13 of 14) protein_coding-intron (ENSMUSG00000019889.10, intron 13 of 31) -60042 ENSMUSG00000019889.10 ENSMUSG00000019889 ENSMUST00000220404 Ptprk protein_coding Interval_132187 chr5 143191882 143192090 + 0 NA intron (ENSMUSG00000029586.9, intron 1 of 7) protein_coding-intron (ENSMUSG00000029586.9, intron 1 of 7) -2140 ENSMUSG00000029586.9 ENSMUSG00000029586 ENSMUST00000197330 Spdye4b protein_coding Interval_46735 chr13 69717574 69718992 + 0 NA intron (ENSMUSG00000052981.6, intron 1 of 1) protein_coding-intron (ENSMUSG00000052981.6, intron 1 of 1) 20472 ENSMUSG00000113324.1 ENSMUSG00000113324 ENSMUST00000220876 Gm48819 lincRNA Interval_53156 chr14 54770425 54772927 + 0 NA intron (ENSMUSG00000022180.7, intron 1 of 3) protein_coding-intron (ENSMUSG00000022180.7, intron 1 of 10) 10270 ENSMUSG00000022180.7 ENSMUSG00000022180 ENSMUST00000226646 Slc7a8 protein_coding Interval_125706 chr5 73382561 73383388 + 0 NA intron (ENSMUSG00000107272.1, intron 1 of 1) transcribed_processed_pseudogene-intron (ENSMUSG00000107272.1, intron 1 of 1) -7675 ENSMUSG00000107272.1 ENSMUSG00000107272 ENSMUST00000202586 Gm34583 transcribed_processed_pseudogene Interval_166269 chr9 57908434 57908697 + 0 NA Intergenic Intergenic -4069 ENSMUSG00000055720.10 ENSMUSG00000055720 ENSMUST00000215936 Ubl7 protein_coding Interval_50470 chr14 13812873 13813072 + 0 NA Intergenic Intergenic -20912 ENSMUSG00000114480.1 ENSMUSG00000114480 ENSMUST00000225631 Gm3637 processed_pseudogene Interval_110676 chr4 6219187 6219403 + 0 NA exon (ENSMUSG00000028243.5, exon 8 of 8) protein_coding-exon (ENSMUSG00000028243.5, exon 8 of 8) 28197 ENSMUSG00000028243.5 ENSMUSG00000028243 ENSMUST00000029907 Ubxn2b protein_coding Interval_83769 chr19 4509893 4511003 + 0 NA promoter-TSS (ENSMUSG00000024892.17) protein_coding-promoter-TSS (ENSMUSG00000024892.17) -11865 ENSMUSG00000042041.7 ENSMUSG00000042041 ENSMUST00000048482 2010003K11Rik protein_coding Interval_152665 chr7 135982579 135982770 + 0 NA Intergenic Intergenic 29876 ENSMUSG00000098031.1 ENSMUSG00000098031 ENSMUST00000183000 Gm9341 processed_pseudogene Interval_98732 chr2 154558168 154559351 + 0 NA promoter-TSS (ENSMUSG00000027489.15) protein_coding-promoter-TSS (ENSMUSG00000027489.15) -1480 ENSMUSG00000027489.15 ENSMUSG00000027489 ENSMUST00000149725 Necab3 protein_coding Interval_17720 chr10 79737961 79739248 + 0 NA promoter-TSS (ENSMUSG00000020329.12) protein_coding-promoter-TSS (ENSMUSG00000020329.12) 7967 ENSMUSG00000020329.12 ENSMUSG00000020329 ENSMUST00000161375 Polrmt protein_coding Interval_39537 chr12 89530837 89531317 + 0 NA intron (ENSMUSG00000066392.12, intron 12 of 18) protein_coding-intron (ENSMUSG00000066392.12, intron 13 of 19) 99741 ENSMUSG00000080680.1 ENSMUSG00000080680 ENSMUST00000117030 Gm23989 miRNA Interval_119429 chr4 137587667 137588033 + 0 NA Intergenic Intergenic -5746 ENSMUSG00000094035.3 ENSMUSG00000094035 ENSMUST00000238941 Ldlrad2 protein_coding Interval_163122 chr9 15431754 15433001 + 0 NA Intergenic Intergenic -7763 ENSMUSG00000111823.1 ENSMUSG00000111823 ENSMUST00000215651 Gm2517 processed_pseudogene Interval_129353 chr5 119397927 119398148 + 0 NA Intergenic Intergenic 100792 ENSMUSG00000084548.1 ENSMUSG00000084548 ENSMUST00000122599 n-R5s175 rRNA Interval_135434 chr6 39360210 39360514 + 0 NA intron (ENSMUSG00000029924.12, intron 5 of 7) protein_coding-intron (ENSMUSG00000029924.12, intron 3 of 14) 17295 ENSMUSG00000029924.12 ENSMUSG00000029924 ENSMUST00000202785 Slc37a3 protein_coding Interval_64035 chr16 5884428 5885888 + 0 NA promoter-TSS (ENSMUSG00000008658.16) protein_coding-promoter-TSS (ENSMUSG00000008658.16) -90427 ENSMUSG00000101481.1 ENSMUSG00000101481 ENSMUST00000190515 1700123O21Rik sense_intronic Interval_23783 chr11 26198040 26198341 + 0 NA intron (ENSMUSG00000032985.15, intron 1 of 1) protein_coding-intron (ENSMUSG00000032985.15, intron 1 of 6) -4050 ENSMUSG00000099015.1 ENSMUSG00000099015 ENSMUST00000185114 Mir6372 miRNA Interval_32051 chr11 104768010 104768576 + 0 NA intron (ENSMUSG00000040838.10, intron 28 of 187) protein_coding-intron (ENSMUSG00000040838.10, intron 28 of 187) -46123 ENSMUSG00000081513.1 ENSMUSG00000081513 ENSMUST00000120176 Gm11623 processed_pseudogene Interval_77701 chr17 94476324 94476524 + 0 NA Intergenic Intergenic -131761 ENSMUSG00000117476.1 ENSMUSG00000117476 ENSMUST00000234959 Gm9416 processed_pseudogene Interval_67157 chr16 44001969 44002764 + 0 NA intron (ENSMUSG00000036292.14, intron 9 of 17) protein_coding-intron (ENSMUSG00000036292.14, intron 4 of 12) -11486 ENSMUSG00000093912.1 ENSMUSG00000093912 ENSMUST00000175563 Mir3470b miRNA Interval_82066 chr18 67471796 67473888 + 0 NA promoter-TSS (ENSMUSG00000024530.8) protein_coding-promoter-TSS (ENSMUSG00000024530.8) 7951 ENSMUSG00000024530.8 ENSMUSG00000024530 ENSMUST00000235414 Prelid3a protein_coding Interval_84274 chr19 9215093 9215808 + 0 NA promoter-TSS (ENSMUSG00000117804.1) processed_pseudogene-promoter-TSS (ENSMUSG00000117804.1) -931 ENSMUSG00000117804.1 ENSMUSG00000117804 ENSMUST00000236432 Gm6252 processed_pseudogene Interval_103168 chr3 36205872 36206627 + 0 NA TTS (ENSMUSG00000104568.1) antisense-TTS (ENSMUSG00000104568.1) 2960 ENSMUSG00000104568.1 ENSMUSG00000104568 ENSMUST00000198885 Gm43255 antisense Interval_127215 chr5 101439718 101440092 + 0 NA Intergenic Intergenic 66424 ENSMUSG00000106610.1 ENSMUSG00000106610 ENSMUST00000199021 Gm43103 processed_pseudogene Interval_84157 chr19 7612003 7613401 + 0 NA promoter-TSS (ENSMUSG00000024973.17) protein_coding-promoter-TSS (ENSMUSG00000024973.17) 133 ENSMUSG00000024973.17 ENSMUSG00000024973 ENSMUST00000148558 Plaat5 protein_coding Interval_120249 chr4 144898123 144898553 + 0 NA intron (ENSMUSG00000066026.14, intron 2 of 6) protein_coding-intron (ENSMUSG00000066026.14, intron 1 of 5) 5511 ENSMUSG00000066026.14 ENSMUSG00000066026 ENSMUST00000133265 Dhrs3 protein_coding Interval_60736 chr15 76442599 76442840 + 0 NA exon (ENSMUSG00000022558.16, exon 1 of 2) protein_coding-exon (ENSMUSG00000022558.16, exon 1 of 2) 9505 ENSMUSG00000099260.1 ENSMUSG00000099260 ENSMUST00000183412 Mir6954 miRNA Interval_76866 chr17 84611083 84611287 + 0 NA intron (ENSMUSG00000040852.6, intron 26 of 29) protein_coding-intron (ENSMUSG00000040852.6, intron 26 of 29) -13217 ENSMUSG00000065319.1 ENSMUSG00000065319 ENSMUST00000083385 Gm26066 snRNA Interval_43263 chr13 27982932 27983918 + 0 NA Intergenic Intergenic -23087 ENSMUSG00000113916.2 ENSMUSG00000113916 ENSMUST00000220450 Gm18881 processed_pseudogene Interval_34349 chr12 3542572 3542793 + 0 NA Intergenic Intergenic -19414 ENSMUSG00000112105.1 ENSMUSG00000112105 ENSMUST00000219719 Rps7-ps2 processed_pseudogene Interval_105420 chr3 86123340 86123722 + 0 NA intron (ENSMUSG00000028082.14, intron 11 of 12) protein_coding-intron (ENSMUSG00000028082.14, intron 13 of 14) 15327 ENSMUSG00000064984.1 ENSMUSG00000064984 ENSMUST00000083050 Snord73a snoRNA Interval_153092 chr7 141307362 141307572 + 0 NA intron (ENSMUSG00000058886.9, intron 11 of 12) protein_coding-intron (ENSMUSG00000058886.9, intron 10 of 11) 14336 ENSMUSG00000025496.5 ENSMUSG00000025496 ENSMUST00000209649 Drd4 protein_coding Interval_137101 chr6 67359389 67359581 + 0 NA intron (ENSMUSG00000018341.12, intron 3 of 15) protein_coding-intron (ENSMUSG00000018341.12, intron 3 of 15) -19791 ENSMUSG00000018341.12 ENSMUSG00000018341 ENSMUST00000018485 Il12rb2 protein_coding Interval_119254 chr4 136468720 136470866 + 0 NA promoter-TSS (ENSMUSG00000001089.14) protein_coding-promoter-TSS (ENSMUSG00000001089.14) 32 ENSMUSG00000001089.14 ENSMUSG00000001089 ENSMUST00000168936 Luzp1 protein_coding Interval_35273 chr12 19420096 19420302 + 0 NA intron (ENSMUSG00000093908.2, intron 1 of 1) lincRNA-intron (ENSMUSG00000093908.2, intron 1 of 1) 11851 ENSMUSG00000116705.1 ENSMUSG00000116705 ENSMUST00000232472 Gm29737 lincRNA Interval_7572 chr1 132271400 132272156 + 0 NA Intergenic Intergenic 8633 ENSMUSG00000101549.1 ENSMUSG00000101549 ENSMUST00000185761 Gm29630 lincRNA Interval_171423 chr9 118183054 118183735 + 0 NA Intergenic Intergenic 33163 ENSMUSG00000097402.1 ENSMUSG00000097402 ENSMUST00000181824 Gm17399 lincRNA Interval_22877 chr11 16992654 16992847 + 0 NA intron (ENSMUSG00000020120.15, intron 4 of 9) protein_coding-intron (ENSMUSG00000020120.15, intron 4 of 9) 10249 ENSMUSG00000020120.15 ENSMUSG00000020120 ENSMUST00000156101 Plek protein_coding Interval_63680 chr15 102752988 102753848 + 0 NA Intergenic Intergenic 41953 ENSMUSG00000116263.1 ENSMUSG00000116263 ENSMUST00000229081 Gm49473 processed_pseudogene Interval_90429 chr2 30391986 30393180 + 0 NA intron (ENSMUSG00000026856.14, intron 1 of 2) protein_coding-intron (ENSMUSG00000026856.14, intron 1 of 7) 143 ENSMUSG00000026856.14 ENSMUSG00000026856 ENSMUST00000152303 Dolpp1 protein_coding Interval_18476 chr10 86466872 86467412 + 0 NA exon (ENSMUSG00000059602.14, exon 2 of 14) protein_coding-exon (ENSMUSG00000059602.14, exon 2 of 14) 24755 ENSMUSG00000059602.14 ENSMUSG00000059602 ENSMUST00000139197 Syn3 protein_coding Interval_113951 chr4 61717293 61717535 + 0 NA Intergenic Intergenic 18573 ENSMUSG00000083304.1 ENSMUSG00000083304 ENSMUST00000121741 Mup-ps15 unprocessed_pseudogene Interval_113794 chr4 58652107 58652379 + 0 NA intron (ENSMUSG00000086470.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000086470.1, intron 1 of 1) 6349 ENSMUSG00000086470.1 ENSMUSG00000086470 ENSMUST00000127456 Gm12580 lincRNA Interval_170934 chr9 112475410 112475642 + 0 NA Intergenic Intergenic -13896 ENSMUSG00000110876.1 ENSMUSG00000110876 ENSMUST00000216779 4933411E02Rik lincRNA Interval_37166 chr12 59130802 59131903 + 0 NA promoter-TSS (ENSMUSG00000021000.17) protein_coding-promoter-TSS (ENSMUSG00000021000.17) -2720 ENSMUSG00000077505.1 ENSMUSG00000077505 ENSMUST00000104317 Gm24233 snoRNA Interval_18573 chr10 88012422 88012984 + 0 NA Intergenic Intergenic -25522 ENSMUSG00000112235.1 ENSMUSG00000112235 ENSMUST00000218037 Gm48307 TEC Interval_708 chr1 10053854 10054114 + 0 NA intron (ENSMUSG00000056763.16, intron 3 of 3) protein_coding-intron (ENSMUSG00000056763.16, intron 3 of 29) 3960 ENSMUSG00000102356.1 ENSMUSG00000102356 ENSMUST00000194474 1700047N06Rik TEC Interval_147604 chr7 69103995 69104267 + 0 NA Intergenic Intergenic -105753 ENSMUSG00000098017.1 ENSMUSG00000098017 ENSMUST00000181982 Gm5342 processed_pseudogene Interval_16442 chr10 62892423 62893657 + 0 NA promoter-TSS (ENSMUSG00000047146.17) protein_coding-promoter-TSS (ENSMUSG00000047146.17) 474 ENSMUSG00000084569.1 ENSMUSG00000084569 ENSMUST00000122620 Gm26479 snRNA Interval_170242 chr9 106417913 106418765 + 0 NA Intergenic Intergenic -11223 ENSMUSG00000048758.14 ENSMUSG00000048758 ENSMUST00000214067 Rpl29 protein_coding Interval_26110 chr11 54343693 54344244 + 0 NA TTS (ENSMUSG00000085888.7) antisense-TTS (ENSMUSG00000085888.7) 9462 ENSMUSG00000085888.7 ENSMUSG00000085888 ENSMUST00000127107 Gm12224 antisense Interval_39409 chr12 87246766 87247716 + 0 NA promoter-TSS (ENSMUSG00000021038.17) protein_coding-promoter-TSS (ENSMUSG00000021038.17) -8509 ENSMUSG00000072919.4 ENSMUSG00000072919 ENSMUST00000221768 Noxred1 protein_coding Interval_39589 chr12 91277490 91278393 + 0 NA intron (ENSMUSG00000061533.16, intron 14 of 25) protein_coding-intron (ENSMUSG00000061533.16, intron 14 of 25) -45728 ENSMUSG00000113239.1 ENSMUSG00000113239 ENSMUST00000222339 Gm18388 processed_pseudogene Interval_50193 chr14 9288358 9288609 + 0 NA Intergenic Intergenic -112141 ENSMUSG00000114615.1 ENSMUSG00000114615 ENSMUST00000224264 Gm48370 lincRNA Interval_58205 chr15 30740210 30741212 + 0 NA intron (ENSMUSG00000022240.10, intron 1 of 2) protein_coding-intron (ENSMUSG00000022240.10, intron 9 of 22) -114090 ENSMUSG00000115337.1 ENSMUSG00000115337 ENSMUST00000228499 4930570B17Rik antisense Interval_23073 chr11 19735525 19736043 + 0 NA Intergenic Intergenic 14282 ENSMUSG00000083601.1 ENSMUSG00000083601 ENSMUST00000118065 Gm12028 processed_pseudogene Interval_39193 chr12 85718272 85718510 + 0 NA TTS (ENSMUSG00000075973.1) rRNA-TTS (ENSMUSG00000075973.1) 172 ENSMUSG00000106297.1 ENSMUSG00000106297 ENSMUST00000199436 Gm47285 miRNA Interval_26318 chr11 56116464 56117647 + 0 NA Intergenic Intergenic -76045 ENSMUSG00000037393.2 ENSMUSG00000037393 ENSMUST00000037682 Nmur2 protein_coding Interval_133267 chr5 150962468 150964087 + 0 NA intron (ENSMUSG00000058488.7, intron 1 of 2) protein_coding-intron (ENSMUSG00000058488.7, intron 1 of 4) 10573 ENSMUSG00000058488.7 ENSMUSG00000058488 ENSMUST00000202096 Kl protein_coding Interval_172119 chrX 7736850 7737421 + 0 NA TTS (ENSMUSG00000031150.13) protein_coding-TTS (ENSMUSG00000031150.13) -3231 ENSMUSG00000031150.13 ENSMUSG00000031150 ENSMUST00000139499 Ccdc120 protein_coding Interval_101582 chr3 7138510 7139510 + 0 NA Intergenic Intergenic 54200 ENSMUSG00000104274.1 ENSMUSG00000104274 ENSMUST00000193158 Gm8823 processed_pseudogene Interval_124311 chr5 43841268 43843092 + 0 NA exon (ENSMUSG00000029082.17, exon 9 of 9) protein_coding-exon (ENSMUSG00000029082.17, exon 9 of 9) 23295 ENSMUSG00000029082.17 ENSMUSG00000029082 ENSMUST00000125838 Bst1 protein_coding Interval_87624 chr19 53792155 53793685 + 0 NA promoter-TSS (ENSMUSG00000043639.15) protein_coding-promoter-TSS (ENSMUSG00000043639.15) -24610 ENSMUSG00000089807.1 ENSMUSG00000089807 ENSMUST00000161107 Gm16298 processed_pseudogene Interval_75509 chr17 67651633 67651864 + 0 NA Intergenic Intergenic -19025 ENSMUSG00000073375.3 ENSMUSG00000073375 ENSMUST00000097290 Lrrc30 protein_coding Interval_157830 chr8 74712784 74713307 + 0 NA intron (ENSMUSG00000079011.9, intron 5 of 9) lincRNA-intron (ENSMUSG00000079011.9, intron 5 of 9) 120892 ENSMUSG00000079011.9 ENSMUSG00000079011 ENSMUST00000137218 Gm11033 lincRNA Interval_100685 chr2 171574031 171574769 + 0 NA Intergenic Intergenic -267969 ENSMUSG00000088505.1 ENSMUSG00000088505 ENSMUST00000157880 Gm26489 scaRNA Interval_57712 chr15 16435559 16435781 + 0 NA Intergenic Intergenic 61142 ENSMUSG00000115614.1 ENSMUSG00000115614 ENSMUST00000227529 Gm41276 lincRNA Interval_171924 chr9 122605414 122605716 + 0 NA intron (ENSMUSG00000097736.8, intron 2 of 3) lincRNA-intron (ENSMUSG00000097736.8, intron 2 of 3) 33063 ENSMUSG00000097736.8 ENSMUSG00000097736 ENSMUST00000181719 9530059O14Rik lincRNA Interval_145420 chr7 34643090 34643683 + 0 NA intron (ENSMUSG00000030499.9, intron 2 of 3) protein_coding-intron (ENSMUSG00000030499.9, intron 5 of 6) -5674 ENSMUSG00000108723.1 ENSMUSG00000108723 ENSMUST00000206863 Gm44837 lincRNA Interval_52490 chr14 46932224 46932814 + 0 NA intron (ENSMUSG00000021838.17, intron 3 of 12) protein_coding-intron (ENSMUSG00000021838.17, intron 2 of 12) 22409 ENSMUSG00000099036.1 ENSMUSG00000099036 ENSMUST00000184478 Mir378c miRNA Interval_70314 chr17 8420702 8422034 + 0 NA intron (ENSMUSG00000058159.14, intron 6 of 8) protein_coding-intron (ENSMUSG00000058159.14, intron 9 of 10) -14043 ENSMUSG00000062327.10 ENSMUSG00000062327 ENSMUST00000177118 T protein_coding Interval_73030 chr17 34242688 34242924 + 0 NA intron (ENSMUSG00000041538.16, intron 1 of 3) protein_coding-intron (ENSMUSG00000041538.16, intron 3 of 5) 725 ENSMUSG00000041538.16 ENSMUSG00000041538 ENSMUST00000172952 H2-Ob protein_coding Interval_86281 chr19 38354384 38355251 + 0 NA Intergenic Intergenic -12203 ENSMUSG00000118381.1 ENSMUSG00000118381 ENSMUST00000237671 Gm50150 processed_pseudogene Interval_85692 chr19 29691550 29691825 + 0 NA Intergenic Intergenic -6247 ENSMUSG00000024806.4 ENSMUSG00000024806 ENSMUST00000235954 Mlana protein_coding Interval_79733 chr18 34789964 34790347 + 0 NA intron (ENSMUSG00000038773.11, intron 1 of 22) protein_coding-intron (ENSMUSG00000038773.11, intron 1 of 23) -6740 ENSMUSG00000038773.11 ENSMUSG00000038773 ENSMUST00000223567 Kdm3b protein_coding Interval_15994 chr10 59986306 59986748 + 0 NA TTS (ENSMUSG00000020107.10) protein_coding-TTS (ENSMUSG00000020107.10) 11783 ENSMUSG00000020107.10 ENSMUSG00000020107 ENSMUST00000183113 Anapc16 protein_coding Interval_91969 chr2 52086817 52087657 + 0 NA intron (ENSMUSG00000036202.16, intron 10 of 35) protein_coding-intron (ENSMUSG00000036202.16, intron 10 of 35) -24896 ENSMUSG00000036202.16 ENSMUSG00000036202 ENSMUST00000152178 Rif1 protein_coding Interval_132158 chr5 143000874 143001446 + 0 NA intron (ENSMUSG00000045078.12, intron 15 of 16) protein_coding-intron (ENSMUSG00000045078.12, intron 15 of 16) 40784 ENSMUSG00000029581.14 ENSMUSG00000029581 ENSMUST00000135293 Fscn1 protein_coding Interval_150550 chr7 112336472 112336926 + 0 NA intron (ENSMUSG00000038244.14, intron 18 of 23) protein_coding-intron (ENSMUSG00000038244.14, intron 18 of 23) -12695 ENSMUSG00000038244.14 ENSMUSG00000038244 ENSMUST00000140202 Mical2 protein_coding Interval_118858 chr4 134092224 134092927 + 0 NA TTS (ENSMUSG00000000682.7) protein_coding-TTS (ENSMUSG00000000682.7) 2466 ENSMUSG00000000682.7 ENSMUSG00000000682 ENSMUST00000137445 Cd52 protein_coding Interval_124490 chr5 48889554 48890435 + 0 NA promoter-TSS (ENSMUSG00000029088.16) protein_coding-promoter-TSS (ENSMUSG00000029088.16) -437 ENSMUSG00000029088.16 ENSMUSG00000029088 ENSMUST00000101214 Kcnip4 protein_coding Interval_69299 chr16 92019174 92020876 + 0 NA Intergenic Intergenic -9614 ENSMUSG00000116834.1 ENSMUSG00000116834 ENSMUST00000232327 Gm18020 processed_pseudogene Interval_85612 chr19 29066867 29067717 + 0 NA promoter-TSS (ENSMUSG00000118038.1) lincRNA-promoter-TSS (ENSMUSG00000118038.1) -55 ENSMUSG00000118038.1 ENSMUSG00000118038 ENSMUST00000235636 Gm9895 lincRNA Interval_35981 chr12 33084781 33085472 + 0 NA intron (ENSMUSG00000035860.9, intron 2 of 19) protein_coding-intron (ENSMUSG00000035860.9, intron 2 of 19) 22685 ENSMUSG00000092931.2 ENSMUSG00000092931 ENSMUST00000175190 Gm22904 miRNA Interval_159734 chr8 99664215 99664426 + 0 NA intron (ENSMUSG00000083586.2, intron 2 of 4) unprocessed_pseudogene-intron (ENSMUSG00000083586.2, intron 2 of 4) 301 ENSMUSG00000083586.2 ENSMUSG00000083586 ENSMUST00000118240 Gm8688 unprocessed_pseudogene Interval_107730 chr3 112138773 112139053 + 0 NA Intergenic Intergenic 60128 ENSMUSG00000089017.1 ENSMUSG00000089017 ENSMUST00000158392 Gm25519 snoRNA Interval_32632 chr11 109307079 109307470 + 0 NA Intergenic Intergenic -39565 ENSMUSG00000099630.1 ENSMUSG00000099630 ENSMUST00000190043 1700096J18Rik lincRNA Interval_82668 chr18 75807785 75808107 + 0 NA Intergenic Intergenic -12269 ENSMUSG00000044646.15 ENSMUSG00000044646 ENSMUST00000167921 Zbtb7c protein_coding Interval_12466 chr1 193731710 193733083 + 0 NA Intergenic Intergenic -134613 ENSMUSG00000104182.1 ENSMUSG00000104182 ENSMUST00000194272 Gm21362 processed_pseudogene Interval_1604 chr1 29636454 29636804 + 0 NA Intergenic Intergenic -150714 ENSMUSG00000099492.1 ENSMUSG00000099492 ENSMUST00000190438 Gm5525 processed_pseudogene Interval_98216 chr2 149998649 149998991 + 0 NA intron (ENSMUSG00000074736.10, intron 3 of 3) protein_coding-intron (ENSMUSG00000074736.10, intron 4 of 4) 112756 ENSMUSG00000083055.1 ENSMUSG00000083055 ENSMUST00000119999 Gm14140 processed_pseudogene Interval_31812 chr11 103079963 103081721 + 0 NA TTS (ENSMUSG00000020937.14) protein_coding-TTS (ENSMUSG00000020937.14) 20776 ENSMUSG00000020937.14 ENSMUSG00000020937 ENSMUST00000142970 Plcd3 protein_coding Interval_152809 chr7 138083971 138084491 + 0 NA Intergenic Intergenic 17308 ENSMUSG00000064575.1 ENSMUSG00000064575 ENSMUST00000082641 Gm25798 snRNA Interval_64778 chr16 15645088 15645351 + 0 NA intron (ENSMUSG00000022672.8, intron 1 of 21) protein_coding-intron (ENSMUSG00000022672.8, intron 1 of 85) 7353 ENSMUSG00000022672.8 ENSMUSG00000022672 ENSMUST00000023352 Prkdc protein_coding Interval_19186 chr10 95370591 95371384 + 0 NA Intergenic Intergenic 16099 ENSMUSG00000100550.2 ENSMUSG00000100550 ENSMUST00000219492 2310039L15Rik lincRNA Interval_159311 chr8 93367720 93368123 + 0 NA intron (ENSMUSG00000074156.6, intron 4 of 13) protein_coding-intron (ENSMUSG00000074156.6, intron 4 of 13) 11804 ENSMUSG00000074156.6 ENSMUSG00000074156 ENSMUST00000145041 Ces1h protein_coding Interval_22345 chr11 8974877 8975069 + 0 NA Intergenic Intergenic -24434 ENSMUSG00000046634.12 ENSMUSG00000046634 ENSMUST00000155886 Pkd1l1 protein_coding Interval_18357 chr10 85165102 85165855 + 0 NA intron (ENSMUSG00000020038.10, intron 1 of 12) protein_coding-intron (ENSMUSG00000020038.10, intron 1 of 12) -14122 ENSMUSG00000020038.10 ENSMUSG00000020038 ENSMUST00000214675 Cry1 protein_coding Interval_21546 chr10 129664772 129665203 + 0 NA Intergenic Intergenic 7293 ENSMUSG00000108114.2 ENSMUSG00000108114 ENSMUST00000104903 Olfr800 protein_coding Interval_50434 chr14 13148847 13150085 + 0 NA Intergenic Intergenic 21252 ENSMUSG00000051729.12 ENSMUSG00000051729 ENSMUST00000140967 Gm5087 processed_transcript Interval_32846 chr11 111872458 111872903 + 0 NA Intergenic Intergenic -71804 ENSMUSG00000086752.1 ENSMUSG00000086752 ENSMUST00000124855 Gm11674 lincRNA Interval_51562 chr14 30190291 30190590 + 0 NA intron (ENSMUSG00000015968.18, intron 4 of 40) protein_coding-intron (ENSMUSG00000015968.18, intron 4 of 48) -17298 ENSMUSG00000114650.1 ENSMUSG00000114650 ENSMUST00000224405 Gm47570 processed_pseudogene Interval_171234 chr9 115453612 115454097 + 0 NA Intergenic Intergenic -15273 ENSMUSG00000074034.1 ENSMUSG00000074034 ENSMUST00000075898 Gm5921 processed_pseudogene Interval_117205 chr4 120562408 120562669 + 0 NA intron (ENSMUSG00000028633.7, intron 4 of 18) protein_coding-intron (ENSMUSG00000028633.7, intron 4 of 18) -17471 ENSMUSG00000028633.7 ENSMUSG00000028633 ENSMUST00000140891 Ctps protein_coding Interval_88153 chr19 59915193 59915414 + 0 NA intron (ENSMUSG00000040022.14, intron 3 of 4) protein_coding-intron (ENSMUSG00000040022.14, intron 3 of 5) -14241 ENSMUSG00000090965.1 ENSMUSG00000090965 ENSMUST00000164379 Gm17203 lincRNA Interval_169568 chr9 99170595 99170922 + 0 NA Intergenic Intergenic -30833 ENSMUSG00000032462.14 ENSMUSG00000032462 ENSMUST00000124723 Pik3cb protein_coding Interval_61211 chr15 79997187 79997379 + 0 NA intron (ENSMUSG00000000489.7, intron 6 of 6) protein_coding-intron (ENSMUSG00000000489.7, intron 6 of 6) 1743 ENSMUSG00000099222.1 ENSMUSG00000099222 ENSMUST00000183847 Mir7213 miRNA Interval_99730 chr2 164540798 164541415 + 0 NA Intergenic Intergenic -9424 ENSMUSG00000086179.1 ENSMUSG00000086179 ENSMUST00000151754 Gm14317 lincRNA Interval_74463 chr17 51178406 51179868 + 0 NA promoter-TSS (ENSMUSG00000023923.10) protein_coding-promoter-TSS (ENSMUSG00000023923.10) 157 ENSMUSG00000023923.10 ENSMUSG00000023923 ENSMUST00000225473 Tbc1d5 protein_coding Interval_167061 chr9 64960202 64961363 + 0 NA promoter-TSS (ENSMUSG00000034263.13) protein_coding-promoter-TSS (ENSMUSG00000034263.13) -907 ENSMUSG00000034263.13 ENSMUSG00000034263 ENSMUST00000215789 Ints14 protein_coding Interval_119622 chr4 138814890 138815337 + 0 NA intron (ENSMUSG00000041193.15, intron 1 of 2) protein_coding-intron (ENSMUSG00000041193.15, intron 2 of 5) -5290 ENSMUSG00000041193.15 ENSMUSG00000041193 ENSMUST00000140100 Pla2g5 protein_coding Interval_169917 chr9 102945014 102945359 + 0 NA Intergenic Intergenic 46631 ENSMUSG00000032547.12 ENSMUSG00000032547 ENSMUST00000177274 Ryk protein_coding Interval_76150 chr17 75589044 75589249 + 0 NA Intergenic Intergenic -37273 ENSMUSG00000002017.10 ENSMUSG00000002017 ENSMUST00000141969 Fam98a protein_coding Interval_102727 chr3 30620069 30621960 + 0 NA Intergenic Intergenic 18370 ENSMUSG00000037730.13 ENSMUSG00000037730 ENSMUST00000193736 Mynn protein_coding Interval_6398 chr1 106973085 106973641 + 0 NA Intergenic Intergenic -7631 ENSMUSG00000048775.10 ENSMUSG00000048775 ENSMUST00000136766 Serpinb13 protein_coding Interval_122036 chr5 14389324 14389927 + 0 NA Intergenic Intergenic 147163 ENSMUSG00000106310.1 ENSMUSG00000106310 ENSMUST00000197397 Gm43523 TEC Interval_57793 chr15 20018117 20018332 + 0 NA TTS (ENSMUSG00000115830.1) processed_pseudogene-TTS (ENSMUSG00000115830.1) 641 ENSMUSG00000115830.1 ENSMUSG00000115830 ENSMUST00000226614 Gm49176 processed_pseudogene Interval_18595 chr10 88306364 88306890 + 0 NA Intergenic Intergenic 3505 ENSMUSG00000112715.1 ENSMUSG00000112715 ENSMUST00000218701 Gm48476 processed_pseudogene Interval_34754 chr12 9579458 9581859 + 0 NA exon (ENSMUSG00000048387.8, exon 3 of 3) protein_coding-exon (ENSMUSG00000048387.8, exon 3 of 3) -10073 ENSMUSG00000099360.1 ENSMUSG00000099360 ENSMUST00000188935 1700022H16Rik bidirectional_promoter_lncRNA Interval_172521 chrX 23813455 23813680 + 0 NA Intergenic Intergenic 42467 ENSMUSG00000081812.1 ENSMUSG00000081812 ENSMUST00000121708 Gm4789 processed_pseudogene Interval_48637 chr13 100777063 100777337 + 0 NA Intergenic Intergenic -1417 ENSMUSG00000045273.8 ENSMUSG00000045273 ENSMUST00000136694 Cenph protein_coding Interval_160187 chr8 107012488 107013278 + 0 NA exon (ENSMUSG00000041308.6, exon 6 of 6) protein_coding-exon (ENSMUSG00000041308.6, exon 6 of 6) -3272 ENSMUSG00000088969.1 ENSMUSG00000088969 ENSMUST00000158344 Gm22085 snRNA Interval_134487 chr6 29085899 29086107 + 0 NA Intergenic Intergenic 20541 ENSMUSG00000059201.12 ENSMUSG00000059201 ENSMUST00000169505 Lep protein_coding Interval_131523 chr5 137731558 137731934 + 0 NA TTS (ENSMUSG00000045348.16) protein_coding-TTS (ENSMUSG00000045348.16) 7972 ENSMUSG00000045348.16 ENSMUSG00000045348 ENSMUST00000149512 Nyap1 protein_coding Interval_124606 chr5 52276322 52276514 + 0 NA intron (ENSMUSG00000097145.5, intron 3 of 3) processed_transcript-intron (ENSMUSG00000097145.5, intron 3 of 3) 37082 ENSMUSG00000105328.1 ENSMUSG00000105328 ENSMUST00000197541 Gm43180 TEC Interval_161180 chr8 118266111 118267215 + 0 NA Intergenic Intergenic 115528 ENSMUSG00000110662.1 ENSMUSG00000110662 ENSMUST00000213075 Gm45722 processed_pseudogene Interval_102473 chr3 27082920 27083257 + 0 NA Intergenic Intergenic -25894 ENSMUSG00000087742.1 ENSMUSG00000087742 ENSMUST00000157117 Gm25152 snoRNA Interval_50609 chr14 16555205 16555565 + 0 NA intron (ENSMUSG00000017491.9, intron 1 of 1) protein_coding-intron (ENSMUSG00000017491.9, intron 1 of 7) -20216 ENSMUSG00000114463.1 ENSMUSG00000114463 ENSMUST00000224418 Gm48162 antisense Interval_134899 chr6 33323042 33323697 + 0 NA intron (ENSMUSG00000029763.17, intron 5 of 6) protein_coding-intron (ENSMUSG00000029763.17, intron 5 of 17) -10048 ENSMUSG00000029763.17 ENSMUSG00000029763 ENSMUST00000134653 Exoc4 protein_coding Interval_144994 chr7 29313068 29313365 + 0 NA promoter-TSS (ENSMUSG00000030584.14) protein_coding-promoter-TSS (ENSMUSG00000030584.14) -1847 ENSMUSG00000030584.14 ENSMUSG00000030584 ENSMUST00000207677 Dpf1 protein_coding Interval_97056 chr2 130823521 130824337 + 0 NA intron (ENSMUSG00000027309.18, intron 1 of 3) protein_coding-intron (ENSMUSG00000027309.18, intron 1 of 36) -19947 ENSMUSG00000089662.1 ENSMUSG00000089662 ENSMUST00000120631 Gm14057 transcribed_processed_pseudogene Interval_157591 chr8 71586735 71587094 + 0 NA TTS (ENSMUSG00000031808.7) protein_coding-TTS (ENSMUSG00000031808.7) -5377 ENSMUSG00000031807.10 ENSMUSG00000031807 ENSMUST00000143441 Pgls protein_coding Interval_112246 chr4 38080483 38081338 + 0 NA Intergenic Intergenic 52065 ENSMUSG00000082899.1 ENSMUSG00000082899 ENSMUST00000119607 Gm12379 processed_pseudogene Interval_12958 chr10 8742987 8743777 + 0 NA intron (ENSMUSG00000015305.6, intron 12 of 19) protein_coding-intron (ENSMUSG00000015305.6, intron 12 of 19) 30141 ENSMUSG00000111215.1 ENSMUSG00000111215 ENSMUST00000213934 Gm48654 lincRNA Interval_25808 chr11 51855244 51857004 + 0 NA intron (ENSMUSG00000020387.15, intron 1 of 12) protein_coding-intron (ENSMUSG00000020387.15, intron 1 of 11) 1001 ENSMUSG00000020387.15 ENSMUSG00000020387 ENSMUST00000151277 Jade2 protein_coding Interval_137824 chr6 82760474 82761613 + 0 NA intron (ENSMUSG00000000628.10, intron 1 of 17) protein_coding-intron (ENSMUSG00000000628.10, intron 1 of 17) -3239 ENSMUSG00000090293.1 ENSMUSG00000090293 ENSMUST00000168990 Gm17034 antisense Interval_33892 chr11 119219551 119220681 + 0 NA promoter-TSS (ENSMUSG00000087404.1) lincRNA-promoter-TSS (ENSMUSG00000087404.1) -44 ENSMUSG00000087404.1 ENSMUSG00000087404 ENSMUST00000143291 Gm11752 lincRNA Interval_32724 chr11 110053730 110054203 + 0 NA intron (ENSMUSG00000041828.15, intron 24 of 38) protein_coding-intron (ENSMUSG00000041828.15, intron 24 of 38) 11407 ENSMUSG00000041828.15 ENSMUSG00000041828 ENSMUST00000106662 Abca8a protein_coding Interval_89871 chr2 26129307 26129882 + 0 NA Intergenic Intergenic -8952 ENSMUSG00000087595.1 ENSMUSG00000087595 ENSMUST00000155199 1810012K08Rik lincRNA Interval_144416 chr7 25022743 25023284 + 0 NA exon (ENSMUSG00000003378.9, exon 14 of 20) protein_coding-exon (ENSMUSG00000003378.9, exon 14 of 20) -17070 ENSMUSG00000040907.15 ENSMUSG00000040907 ENSMUST00000125444 Atp1a3 protein_coding Interval_61042 chr15 78925932 78926973 + 0 NA promoter-TSS (ENSMUSG00000068220.6) protein_coding-promoter-TSS (ENSMUSG00000068220.6) -274 ENSMUSG00000068220.6 ENSMUSG00000068220 ENSMUST00000229159 Lgals1 protein_coding Interval_10631 chr1 172329154 172329386 + 0 NA promoter-TSS (ENSMUSG00000038026.12) protein_coding-promoter-TSS (ENSMUSG00000038026.12) -1162 ENSMUSG00000038026.12 ENSMUSG00000038026 ENSMUST00000194860 Kcnj9 protein_coding Interval_4531 chr1 74818609 74819233 + 0 NA Intergenic Intergenic 25558 ENSMUSG00000026167.14 ENSMUSG00000026167 ENSMUST00000187238 Wnt10a protein_coding Interval_6378 chr1 106563947 106565384 + 0 NA intron (ENSMUSG00000057329.7, intron 1 of 1) protein_coding-intron (ENSMUSG00000057329.7, intron 1 of 1) -18034 ENSMUSG00000098344.1 ENSMUSG00000098344 ENSMUST00000183743 Mir3473f miRNA Interval_124223 chr5 41707151 41708783 + 0 NA exon (ENSMUSG00000029128.12, exon 1 of 7) protein_coding-exon (ENSMUSG00000029128.12, exon 1 of 7) 190 ENSMUSG00000029128.12 ENSMUSG00000029128 ENSMUST00000201473 Rab28 protein_coding Interval_137825 chr6 82763791 82764431 + 0 NA promoter-TSS (ENSMUSG00000090293.1) antisense-promoter-TSS (ENSMUSG00000090293.1) -171 ENSMUSG00000090293.1 ENSMUSG00000090293 ENSMUST00000168990 Gm17034 antisense Interval_106327 chr3 95399836 95402912 + 0 NA intron (ENSMUSG00000105734.1, intron 1 of 1) protein_coding-intron (ENSMUSG00000105734.1, intron 1 of 1) 1467 ENSMUSG00000105734.1 ENSMUSG00000105734 ENSMUST00000196239 4930558C23Rik protein_coding Interval_6626 chr1 118388222 118390211 + 0 NA promoter-TSS (ENSMUSG00000064302.13) protein_coding-promoter-TSS (ENSMUSG00000064302.13) 31904 ENSMUSG00000099936.1 ENSMUSG00000099936 ENSMUST00000190194 Gm28867 lincRNA Interval_37303 chr12 65013029 65013316 + 0 NA intron (ENSMUSG00000035614.11, intron 17 of 20) protein_coding-intron (ENSMUSG00000035614.11, intron 16 of 19) -30118 ENSMUSG00000035597.19 ENSMUSG00000035597 ENSMUST00000220729 Prpf39 protein_coding Interval_147607 chr7 69435238 69435525 + 0 NA Intergenic Intergenic -38449 ENSMUSG00000110028.1 ENSMUSG00000110028 ENSMUST00000209231 Gm34838 lincRNA Interval_7314 chr1 128805669 128805969 + 0 NA Intergenic Intergenic -31398 ENSMUSG00000097283.1 ENSMUSG00000097283 ENSMUST00000181951 Gm26686 lincRNA Interval_137492 chr6 72740085 72741288 + 0 NA intron (ENSMUSG00000055799.13, intron 2 of 5) protein_coding-intron (ENSMUSG00000055799.13, intron 3 of 11) 11228 ENSMUSG00000104501.1 ENSMUSG00000104501 ENSMUST00000193564 Gm37736 TEC Interval_57516 chr15 12018366 12018875 + 0 NA Intergenic Intergenic 13307 ENSMUSG00000107344.1 ENSMUSG00000107344 ENSMUST00000201323 Gm2559 processed_pseudogene Interval_141224 chr6 125803485 125803922 + 0 NA intron (ENSMUSG00000038115.16, intron 6 of 25) protein_coding-intron (ENSMUSG00000038115.16, intron 7 of 15) 64297 ENSMUSG00000089834.2 ENSMUSG00000089834 ENSMUST00000161498 Gm16303 processed_pseudogene Interval_171868 chr9 121880237 121881536 + 0 NA TTS (ENSMUSG00000111465.1) lincRNA-TTS (ENSMUSG00000111465.1) 11390 ENSMUSG00000111465.1 ENSMUSG00000111465 ENSMUST00000213591 Gm47113 lincRNA Interval_152108 chr7 129431941 129432937 + 0 NA Intergenic Intergenic -29349 ENSMUSG00000108713.1 ENSMUSG00000108713 ENSMUST00000206093 Gm33027 lincRNA Interval_71568 chr17 24604397 24606231 + 0 NA TTS (ENSMUSG00000002496.10) protein_coding-TTS (ENSMUSG00000002496.10) 1196 ENSMUSG00000002496.10 ENSMUSG00000002496 ENSMUST00000227509 Tsc2 protein_coding Interval_109169 chr3 137497782 137498037 + 0 NA Intergenic Intergenic 54713 ENSMUSG00000055138.10 ENSMUSG00000055138 ENSMUST00000198629 Gm4861 lincRNA Interval_31668 chr11 102145103 102148908 + 0 NA promoter-TSS (ENSMUSG00000087339.1) antisense-promoter-TSS (ENSMUSG00000087339.1) 639 ENSMUSG00000048217.11 ENSMUSG00000048217 ENSMUST00000147252 Nags protein_coding Interval_21355 chr10 128129680 128130106 + 0 NA TTS (ENSMUSG00000040054.17) protein_coding-TTS (ENSMUSG00000040054.17) 38311 ENSMUSG00000040054.17 ENSMUSG00000040054 ENSMUST00000219980 Baz2a protein_coding Interval_148188 chr7 79698458 79700092 + 0 NA exon (ENSMUSG00000050382.14, exon 17 of 18) protein_coding-exon (ENSMUSG00000050382.14, exon 17 of 18) -11096 ENSMUSG00000039133.8 ENSMUSG00000039133 ENSMUST00000197011 9330171B17Rik antisense Interval_84344 chr19 10240246 10241405 + 0 NA promoter-TSS (ENSMUSG00000036098.15) protein_coding-promoter-TSS (ENSMUSG00000036098.15) -77 ENSMUSG00000036098.15 ENSMUSG00000036098 ENSMUST00000189439 Myrf protein_coding Interval_47451 chr13 84430104 84430320 + 0 NA Intergenic Intergenic -90099 ENSMUSG00000098245.1 ENSMUSG00000098245 ENSMUST00000182385 Gm26927 processed_pseudogene Interval_87546 chr19 53368653 53370330 + 0 NA promoter-TSS (ENSMUSG00000025025.14) protein_coding-promoter-TSS (ENSMUSG00000025025.14) 2275 ENSMUSG00000067085.1 ENSMUSG00000067085 ENSMUST00000086887 Gm10197 protein_coding Interval_114885 chr4 86696341 86697179 + 0 NA Intergenic Intergenic -38077 ENSMUSG00000028494.12 ENSMUSG00000028494 ENSMUST00000134094 Plin2 protein_coding Interval_143661 chr7 14056732 14057435 + 0 NA Intergenic Intergenic 50425 ENSMUSG00000099744.1 ENSMUSG00000099744 ENSMUST00000186718 Tmem167-ps3 processed_pseudogene Interval_77974 chr18 6291980 6293106 + 0 NA Intergenic Intergenic -40089 ENSMUSG00000073640.3 ENSMUSG00000073640 ENSMUST00000097682 Rpl27-ps3 processed_pseudogene Interval_46959 chr13 73748527 73750982 + 0 NA intron (ENSMUSG00000017756.9, intron 1 of 10) protein_coding-intron (ENSMUSG00000017756.9, intron 1 of 10) 46038 ENSMUSG00000021566.7 ENSMUSG00000021566 ENSMUST00000160958 Slc6a19os antisense Interval_107718 chr3 111878179 111878413 + 0 NA Intergenic Intergenic -3607 ENSMUSG00000104543.1 ENSMUSG00000104543 ENSMUST00000198910 Gm6602 lincRNA Interval_81231 chr18 56655441 56655790 + 0 NA Intergenic Intergenic -12163 ENSMUSG00000118275.1 ENSMUSG00000118275 ENSMUST00000235398 Gm50289 processed_pseudogene Interval_167412 chr9 68813931 68814354 + 0 NA intron (ENSMUSG00000032238.17, intron 1 of 5) protein_coding-intron (ENSMUSG00000032238.17, intron 1 of 10) 160251 ENSMUSG00000032238.17 ENSMUSG00000032238 ENSMUST00000113624 Rora protein_coding Interval_48990 chr13 106778452 106778740 + 0 NA Intergenic Intergenic 1624 ENSMUSG00000064854.1 ENSMUSG00000064854 ENSMUST00000082920 Gm24527 snRNA Interval_108424 chr3 127006163 127006376 + 0 NA TTS (ENSMUSG00000077617.1) snoRNA-TTS (ENSMUSG00000077617.1) 900 ENSMUSG00000077617.1 ENSMUSG00000077617 ENSMUST00000104429 Gm25501 snoRNA Interval_25268 chr11 46013855 46015035 + 0 NA intron (ENSMUSG00000040489.5, intron 4 of 4) protein_coding-intron (ENSMUSG00000040489.5, intron 4 of 4) -21995 ENSMUSG00000082870.1 ENSMUSG00000082870 ENSMUST00000117047 Gm12165 processed_pseudogene Interval_19131 chr10 94919561 94919753 + 0 NA intron (ENSMUSG00000074785.5, intron 1 of 4) protein_coding-intron (ENSMUSG00000074785.5, intron 2 of 30) -28933 ENSMUSG00000089146.1 ENSMUSG00000089146 ENSMUST00000158521 Gm25266 misc_RNA Interval_48923 chr13 104881561 104881842 + 0 NA Intergenic Intergenic -18282 ENSMUSG00000042655.5 ENSMUSG00000042655 ENSMUST00000225969 Shisal2b protein_coding Interval_109340 chr3 139174735 139175858 + 0 NA Intergenic Intergenic -30398 ENSMUSG00000047940.13 ENSMUSG00000047940 ENSMUST00000062306 Stpg2 protein_coding Interval_136081 chr6 50554008 50554406 + 0 NA Intergenic Intergenic 12331 ENSMUSG00000063694.5 ENSMUSG00000063694 ENSMUST00000077766 Cycs protein_coding Interval_67311 chr16 45887695 45887979 + 0 NA intron (ENSMUSG00000033149.17, intron 1 of 3) protein_coding-intron (ENSMUSG00000033149.17, intron 1 of 15) -48486 ENSMUSG00000085781.1 ENSMUSG00000085781 ENSMUST00000152070 Gm15640 antisense Interval_47530 chr13 86457199 86457788 + 0 NA Intergenic Intergenic 221666 ENSMUSG00000098152.1 ENSMUSG00000098152 ENSMUST00000182392 Gm27025 processed_pseudogene Interval_35031 chr12 16765064 16765361 + 0 NA intron (ENSMUSG00000036523.16, intron 1 of 34) protein_coding-intron (ENSMUSG00000036523.16, intron 1 of 3) 2011 ENSMUSG00000105567.1 ENSMUSG00000105567 ENSMUST00000199946 Gm44305 miRNA Interval_114439 chr4 76804241 76804525 + 0 NA intron (ENSMUSG00000028399.18, intron 8 of 9) protein_coding-intron (ENSMUSG00000028399.18, intron 8 of 14) 7408 ENSMUSG00000081936.1 ENSMUSG00000081936 ENSMUST00000121243 Gm11244 processed_pseudogene Interval_144800 chr7 28332412 28333058 + 0 NA intron (ENSMUSG00000003435.9, intron 1 of 28) protein_coding-intron (ENSMUSG00000003435.9, intron 2 of 29) 5971 ENSMUSG00000003435.9 ENSMUSG00000003435 ENSMUST00000208726 Supt5 protein_coding Interval_158391 chr8 83331773 83333108 + 0 NA promoter-TSS (ENSMUSG00000035151.12) protein_coding-promoter-TSS (ENSMUSG00000035151.12) 46 ENSMUSG00000035151.12 ENSMUSG00000035151 ENSMUST00000126079 Elmod2 protein_coding Interval_48102 chr13 96006970 96007263 + 0 NA intron (ENSMUSG00000051111.16, intron 3 of 10) protein_coding-intron (ENSMUSG00000051111.16, intron 4 of 12) -16890 ENSMUSG00000051111.16 ENSMUSG00000051111 ENSMUST00000220740 Sv2c protein_coding Interval_25959 chr11 53141032 53141596 + 0 NA intron (ENSMUSG00000036264.9, intron 7 of 15) protein_coding-intron (ENSMUSG00000036264.9, intron 7 of 15) -21258 ENSMUSG00000087668.1 ENSMUSG00000087668 ENSMUST00000137096 Gm11186 antisense Interval_114212 chr4 67916849 67917073 + 0 NA Intergenic Intergenic -13920 ENSMUSG00000083087.1 ENSMUSG00000083087 ENSMUST00000117071 Gm11249 processed_pseudogene Interval_45349 chr13 54608631 54609416 + 0 NA intron (ENSMUSG00000047547.14, intron 1 of 3) protein_coding-intron (ENSMUSG00000047547.14, intron 1 of 5) 2269 ENSMUSG00000047547.14 ENSMUSG00000047547 ENSMUST00000146301 Cltb protein_coding Interval_122372 chr5 21775519 21777280 + 0 NA intron (ENSMUSG00000029014.14, intron 4 of 5) protein_coding-intron (ENSMUSG00000029014.14, intron 4 of 16) 8755 ENSMUSG00000029014.14 ENSMUSG00000029014 ENSMUST00000115192 Dnajc2 protein_coding Interval_169567 chr9 99170336 99170567 + 0 NA Intergenic Intergenic -30526 ENSMUSG00000032462.14 ENSMUSG00000032462 ENSMUST00000124723 Pik3cb protein_coding Interval_92813 chr2 65841337 65842614 + 0 NA Intergenic Intergenic 18644 ENSMUSG00000052865.5 ENSMUSG00000052865 ENSMUST00000155722 Gm13619 antisense Interval_127773 chr5 107665450 107665856 + 0 NA intron (ENSMUSG00000097035.2, intron 1 of 1) lincRNA-intron (ENSMUSG00000097035.2, intron 1 of 1) 22357 ENSMUSG00000097035.2 ENSMUSG00000097035 ENSMUST00000180428 Gm26692 lincRNA Interval_118051 chr4 128639067 128639506 + 0 NA TTS (ENSMUSG00000084891.1) lincRNA-TTS (ENSMUSG00000084891.1) 1815 ENSMUSG00000084891.1 ENSMUSG00000084891 ENSMUST00000141242 Gm12958 lincRNA Interval_62923 chr15 97939029 97939226 + 0 NA Intergenic Intergenic 3842 ENSMUSG00000089233.1 ENSMUSG00000089233 ENSMUST00000158608 Gm22202 misc_RNA Interval_60642 chr15 75880320 75881001 + 0 NA Intergenic Intergenic 8110 ENSMUSG00000098678.1 ENSMUSG00000098678 ENSMUST00000184858 Mroh6 protein_coding Interval_79066 chr18 24283000 24284132 + 0 NA TTS (ENSMUSG00000000420.15) protein_coding-TTS (ENSMUSG00000000420.15) 26188 ENSMUSG00000091363.1 ENSMUSG00000091363 ENSMUST00000163185 Gm7701 processed_pseudogene Interval_66565 chr16 35154311 35156950 + 0 NA exon (ENSMUSG00000022840.9, exon 1 of 21) protein_coding-exon (ENSMUSG00000022840.9, exon 1 of 21) 79293 ENSMUSG00000084581.1 ENSMUSG00000084581 ENSMUST00000122632 Gm25179 snRNA Interval_29867 chr11 87422553 87423895 + 0 NA TTS (ENSMUSG00000095969.1) snRNA-TTS (ENSMUSG00000095969.1) 357 ENSMUSG00000095969.1 ENSMUSG00000095969 ENSMUST00000093684 Rnu1a1 snRNA Interval_129671 chr5 121639027 121639213 + 0 NA intron (ENSMUSG00000029456.12, intron 8 of 16) protein_coding-intron (ENSMUSG00000029456.12, intron 9 of 20) -6341 ENSMUSG00000029456.12 ENSMUSG00000029456 ENSMUST00000137231 Acad10 protein_coding Interval_94842 chr2 96387087 96387375 + 0 NA intron (ENSMUSG00000050587.14, intron 1 of 7) protein_coding-intron (ENSMUSG00000050587.14, intron 1 of 6) 253796 ENSMUSG00000082327.1 ENSMUSG00000082327 ENSMUST00000120750 Gm13801 processed_pseudogene Interval_105749 chr3 89132448 89132694 + 0 NA Intergenic Intergenic -3603 ENSMUSG00000041237.12 ENSMUSG00000041237 ENSMUST00000148097 Pklr protein_coding Interval_34696 chr12 8747685 8747966 + 0 NA intron (ENSMUSG00000020594.14, intron 16 of 19) protein_coding-intron (ENSMUSG00000020594.14, intron 16 of 19) 23356 ENSMUSG00000096940.1 ENSMUSG00000096940 ENSMUST00000181803 Gm4755 bidirectional_promoter_lncRNA Interval_37164 chr12 59095447 59095872 + 0 NA promoter-TSS (ENSMUSG00000021000.17) protein_coding-promoter-TSS (ENSMUSG00000021000.17) -140 ENSMUSG00000021000.17 ENSMUSG00000021000 ENSMUST00000175685 Mia2 protein_coding Interval_83623 chr19 3282360 3283558 + 0 NA promoter-TSS (ENSMUSG00000024829.12) protein_coding-promoter-TSS (ENSMUSG00000024829.12) 21 ENSMUSG00000024831.14 ENSMUSG00000024831 ENSMUST00000143079 Ighmbp2 protein_coding Interval_132544 chr5 146199651 146200969 + 0 NA exon (ENSMUSG00000105542.1, exon 1 of 1) processed_pseudogene-exon (ENSMUSG00000105542.1, exon 1 of 1) 148 ENSMUSG00000105542.1 ENSMUSG00000105542 ENSMUST00000200027 Gm34248 processed_pseudogene Interval_173046 chrX 68313681 68313938 + 0 NA Intergenic Intergenic 2508 ENSMUSG00000082202.3 ENSMUSG00000082202 ENSMUST00000119605 Gm4910 processed_pseudogene Interval_4228 chr1 71786992 71787206 + 0 NA Intergenic Intergenic 59511 ENSMUSG00000102689.1 ENSMUSG00000102689 ENSMUST00000194017 Gm37217 TEC Interval_5664 chr1 90633527 90633775 + 0 NA Intergenic Intergenic 30175 ENSMUSG00000034432.11 ENSMUSG00000034432 ENSMUST00000186882 Cops8 protein_coding Interval_94761 chr2 94059671 94060098 + 0 NA intron (ENSMUSG00000027195.10, intron 3 of 7) protein_coding-intron (ENSMUSG00000027195.10, intron 6 of 10) 6880 ENSMUSG00000027195.10 ENSMUSG00000027195 ENSMUST00000141955 Hsd17b12 protein_coding Interval_65752 chr16 27149277 27149501 + 0 NA Intergenic Intergenic -158100 ENSMUSG00000052276.8 ENSMUSG00000052276 ENSMUST00000066852 Ostn protein_coding Interval_116629 chr4 116169200 116169461 + 0 NA Intergenic Intergenic -4042 ENSMUSG00000078593.2 ENSMUSG00000078593 ENSMUST00000106492 1700042G07Rik protein_coding Interval_136866 chr6 61923264 61923873 + 0 NA intron (ENSMUSG00000039578.17, intron 9 of 10) protein_coding-intron (ENSMUSG00000039578.17, intron 8 of 9) -33121 ENSMUSG00000039578.17 ENSMUSG00000039578 ENSMUST00000232648 Ccser1 protein_coding Interval_86238 chr19 38025317 38026457 + 0 NA intron (ENSMUSG00000048612.16, intron 1 of 9) protein_coding-intron (ENSMUSG00000048612.16, intron 1 of 52) 17512 ENSMUSG00000048612.16 ENSMUSG00000048612 ENSMUST00000226084 Myof protein_coding Interval_56492 chr14 119151868 119152113 + 0 NA intron (ENSMUSG00000053465.6, intron 1 of 1) protein_coding-intron (ENSMUSG00000053465.6, intron 1 of 1) 13649 ENSMUSG00000053465.6 ENSMUSG00000053465 ENSMUST00000065904 Hs6st3 protein_coding Interval_45227 chr13 53297663 53298323 + 0 NA Intergenic Intergenic -22335 ENSMUSG00000021464.14 ENSMUSG00000021464 ENSMUST00000149299 Ror2 protein_coding Interval_118948 chr4 134642039 134642725 + 0 NA intron (ENSMUSG00000037306.13, intron 1 of 8) protein_coding-intron (ENSMUSG00000037306.13, intron 2 of 12) 61385 ENSMUSG00000037306.13 ENSMUSG00000037306 ENSMUST00000176606 Man1c1 protein_coding Interval_53232 chr14 55458152 55460694 + 0 NA Intergenic Intergenic -19511 ENSMUSG00000022210.7 ENSMUSG00000022210 ENSMUST00000227542 Dhrs4 protein_coding Interval_44108 chr13 40930682 40931377 + 0 NA intron (ENSMUSG00000021360.16, intron 1 of 1) protein_coding-intron (ENSMUSG00000021360.16, intron 1 of 2) -13134 ENSMUSG00000114662.1 ENSMUSG00000114662 ENSMUST00000224935 Gm31683 antisense Interval_118553 chr4 132466289 132466863 + 0 NA Intergenic Intergenic -3245 ENSMUSG00000066042.4 ENSMUSG00000066042 ENSMUST00000123604 Med18 protein_coding Interval_31908 chr11 103763495 103764203 + 0 NA Intergenic Intergenic -10301 ENSMUSG00000000125.5 ENSMUSG00000000125 ENSMUST00000000127 Wnt3 protein_coding Interval_46265 chr13 63196219 63197159 + 0 NA intron (ENSMUSG00000021458.17, intron 1 of 5) protein_coding-intron (ENSMUSG00000021458.17, intron 8 of 15) -14261 ENSMUSG00000113853.1 ENSMUSG00000113853 ENSMUST00000221858 Gm47583 TEC Interval_51030 chr14 21672945 21674082 + 0 NA Intergenic Intergenic 29589 ENSMUSG00000063821.6 ENSMUSG00000063821 ENSMUST00000224735 Dupd1 protein_coding Interval_69733 chr16 95929787 95930372 + 0 NA Intergenic Intergenic 29681 ENSMUSG00000085903.1 ENSMUSG00000085903 ENSMUST00000144984 Gm15340 lincRNA Interval_170566 chr9 108732433 108732700 + 0 NA intron (ENSMUSG00000032601.13, intron 5 of 9) protein_coding-intron (ENSMUSG00000032601.13, intron 5 of 10) 6292 ENSMUSG00000065674.1 ENSMUSG00000065674 ENSMUST00000083740 Gm24259 snRNA Interval_10977 chr1 177717320 177719722 + 0 NA Intergenic Intergenic -11293 ENSMUSG00000015962.5 ENSMUSG00000015962 ENSMUST00000016106 1700016C15Rik protein_coding Interval_49916 chr13 118227332 118227559 + 0 NA Intergenic Intergenic -159185 ENSMUSG00000097411.2 ENSMUSG00000097411 ENSMUST00000181168 B430218F22Rik antisense Interval_117982 chr4 127455492 127456752 + 0 NA Intergenic Intergenic -18780 ENSMUSG00000087470.2 ENSMUSG00000087470 ENSMUST00000146587 A630031M04Rik lincRNA Interval_64895 chr16 17035527 17036081 + 0 NA intron (ENSMUSG00000063358.17, intron 3 of 4) protein_coding-intron (ENSMUSG00000063358.17, intron 7 of 8) 466 ENSMUSG00000063358.17 ENSMUSG00000063358 ENSMUST00000232480 Mapk1 protein_coding Interval_167540 chr9 70314008 70314279 + 0 NA intron (ENSMUSG00000032220.10, intron 5 of 28) protein_coding-intron (ENSMUSG00000032220.10, intron 4 of 27) 91610 ENSMUSG00000093763.1 ENSMUSG00000093763 ENSMUST00000176002 Mir5626 miRNA Interval_166627 chr9 61377521 61378068 + 0 NA intron (ENSMUSG00000032280.16, intron 4 of 19) protein_coding-intron (ENSMUSG00000032280.16, intron 4 of 19) 5428 ENSMUSG00000032280.16 ENSMUSG00000032280 ENSMUST00000162281 Tle3 protein_coding Interval_135474 chr6 39526945 39528334 + 0 NA exon (ENSMUSG00000085058.2, exon 1 of 4) protein_coding-intron (ENSMUSG00000038456.9, intron 1 of 5) 113 ENSMUSG00000085058.2 ENSMUSG00000085058 ENSMUST00000200951 8030453O22Rik processed_transcript Interval_37469 chr12 69179359 69179896 + 0 NA TTS (ENSMUSG00000034883.9) protein_coding-TTS (ENSMUSG00000034883.9) 4359 ENSMUSG00000049751.6 ENSMUSG00000049751 ENSMUST00000054544 Rpl36al protein_coding Interval_138588 chr6 89643828 89644884 + 0 NA exon (ENSMUSG00000000811.13, exon 1 of 16) protein_coding-exon (ENSMUSG00000000811.13, exon 1 of 16) 368 ENSMUSG00000000811.13 ENSMUSG00000000811 ENSMUST00000101171 Txnrd3 protein_coding Interval_95407 chr2 108689815 108690683 + 0 NA Intergenic Intergenic 43953 ENSMUSG00000083697.1 ENSMUSG00000083697 ENSMUST00000118202 Gm13914 processed_pseudogene Interval_154266 chr8 13926439 13926691 + 0 NA promoter-TSS (ENSMUSG00000038365.8) protein_coding-promoter-TSS (ENSMUSG00000038365.8) -414 ENSMUSG00000038365.8 ENSMUSG00000038365 ENSMUST00000209310 Fbxo25 protein_coding Interval_25521 chr11 49530304 49530482 + 0 NA intron (ENSMUSG00000063827.2, intron 1 of 4) protein_coding-intron (ENSMUSG00000063827.2, intron 1 of 3) 2108 ENSMUSG00000063827.2 ENSMUSG00000063827 ENSMUST00000074543 Olfr1382 protein_coding Interval_141922 chr6 135397254 135397988 + 0 NA Intergenic Intergenic 35076 ENSMUSG00000030208.15 ENSMUSG00000030208 ENSMUST00000111907 Emp1 protein_coding Interval_136781 chr6 60094929 60095367 + 0 NA intron (ENSMUSG00000073045.9, intron 6 of 7) lincRNA-intron (ENSMUSG00000073045.9, intron 6 of 7) -23962 ENSMUSG00000095176.1 ENSMUSG00000095176 ENSMUST00000083820 Gm22723 snoRNA Interval_147999 chr7 77334702 77335548 + 0 NA Intergenic Intergenic -36129 ENSMUSG00000108611.1 ENSMUSG00000108611 ENSMUST00000207007 Gm44879 processed_pseudogene Interval_131133 chr5 135346203 135346689 + 0 NA intron (ENSMUSG00000040013.11, intron 3 of 7) protein_coding-intron (ENSMUSG00000040013.11, intron 3 of 8) 3568 ENSMUSG00000040013.11 ENSMUSG00000040013 ENSMUST00000201534 Fkbp6 protein_coding Interval_22973 chr11 18274317 18274695 + 0 NA Intergenic Intergenic 53165 ENSMUSG00000081302.1 ENSMUSG00000081302 ENSMUST00000119030 Gm12020 processed_pseudogene Interval_85315 chr19 24606296 24607100 + 0 NA Intergenic Intergenic 50346 ENSMUSG00000117979.1 ENSMUSG00000117979 ENSMUST00000235982 Gm50341 lincRNA Interval_43618 chr13 34148278 34149535 + 0 NA Intergenic Intergenic -14058 ENSMUSG00000071451.10 ENSMUSG00000071451 ENSMUST00000147632 Psmg4 protein_coding Interval_18939 chr10 93273481 93273890 + 0 NA intron (ENSMUSG00000008398.16, intron 2 of 5) protein_coding-intron (ENSMUSG00000008398.16, intron 2 of 4) 34662 ENSMUSG00000020015.10 ENSMUSG00000020015 ENSMUST00000216729 Cdk17 protein_coding Interval_73141 chr17 35050368 35052128 + 0 NA intron (ENSMUSG00000007041.9, intron 1 of 5) protein_coding-intron (ENSMUSG00000007041.9, intron 1 of 5) -1202 ENSMUSG00000007041.9 ENSMUSG00000007041 ENSMUST00000172599 Clic1 protein_coding Interval_151628 chr7 125483974 125485220 + 0 NA intron (ENSMUSG00000030750.13, intron 2 of 4) protein_coding-intron (ENSMUSG00000030750.13, intron 2 of 7) -6038 ENSMUSG00000030750.13 ENSMUSG00000030750 ENSMUST00000149289 Nsmce1 protein_coding Interval_56968 chr14 124367817 124368046 + 0 NA intron (ENSMUSG00000025551.13, intron 1 of 4) protein_coding-intron (ENSMUSG00000025551.13, intron 1 of 4) -30760 ENSMUSG00000115472.1 ENSMUSG00000115472 ENSMUST00000228023 Gm49070 processed_pseudogene Interval_146517 chr7 46560565 46560793 + 0 NA promoter-TSS (ENSMUSG00000087492.2) antisense-promoter-TSS (ENSMUSG00000087492.2) -622 ENSMUSG00000087492.2 ENSMUSG00000087492 ENSMUST00000139791 Gm15700 antisense Interval_73522 chr17 39026098 39026453 + 0 NA Intergenic Intergenic 3310 ENSMUSG00000117021.1 ENSMUSG00000117021 ENSMUST00000233915 Gm49826 processed_pseudogene Interval_127065 chr5 100043646 100044671 + 0 NA intron (ENSMUSG00000029326.13, intron 1 of 2) protein_coding-intron (ENSMUSG00000029326.13, intron 1 of 6) -5289 ENSMUSG00000029328.15 ENSMUSG00000029328 ENSMUST00000151323 Hnrnpdl protein_coding Interval_39801 chr12 98574008 98575608 + 0 NA promoter-TSS (ENSMUSG00000033854.10) protein_coding-promoter-TSS (ENSMUSG00000033854.10) 11168 ENSMUSG00000113849.1 ENSMUSG00000113849 ENSMUST00000221302 Gm47346 TEC Interval_92304 chr2 58549787 58550682 + 0 NA intron (ENSMUSG00000026836.15, intron 1 of 11) protein_coding-intron (ENSMUSG00000026836.15, intron 1 of 10) -33962 ENSMUSG00000026836.15 ENSMUSG00000026836 ENSMUST00000126407 Acvr1 protein_coding Interval_38666 chr12 80930871 80931524 + 0 NA Intergenic Intergenic -6748 ENSMUSG00000101912.1 ENSMUSG00000101912 ENSMUST00000190431 1700052I22Rik lincRNA Interval_82284 chr18 70068635 70068925 + 0 NA intron (ENSMUSG00000024511.15, intron 2 of 6) protein_coding-intron (ENSMUSG00000024511.15, intron 2 of 6) -1443 ENSMUSG00000117678.1 ENSMUSG00000117678 ENSMUST00000237601 Gm50219 processed_pseudogene Interval_168686 chr9 85873051 85873756 + 0 NA Intergenic Intergenic -29272 ENSMUSG00000056031.13 ENSMUSG00000056031 ENSMUST00000187891 9330154J02Rik processed_transcript Interval_14606 chr10 36934755 36937619 + 0 NA Intergenic Intergenic -55579 ENSMUSG00000019777.16 ENSMUSG00000019777 ENSMUST00000123010 Hdac2 protein_coding Interval_57984 chr15 25854266 25854481 + 0 NA intron (ENSMUSG00000022270.16, intron 1 of 8) protein_coding-intron (ENSMUSG00000022270.16, intron 1 of 8) -13762 ENSMUSG00000115593.1 ENSMUSG00000115593 ENSMUST00000228649 Gm4824 processed_pseudogene Interval_11365 chr1 181242757 181243031 + 0 NA promoter-TSS (ENSMUSG00000081214.3) processed_pseudogene-promoter-TSS (ENSMUSG00000081214.3) -574 ENSMUSG00000081214.3 ENSMUSG00000081214 ENSMUST00000117444 Rpl35a-ps2 processed_pseudogene Interval_156022 chr8 42619133 42619821 + 0 NA Intergenic Intergenic -97274 ENSMUSG00000077755.1 ENSMUSG00000077755 ENSMUST00000104567 Gm23531 snoRNA Interval_35503 chr12 23249873 23250110 + 0 NA intron (ENSMUSG00000092465.2, intron 3 of 5) unprocessed_pseudogene-intron (ENSMUSG00000092465.2, intron 3 of 5) 50211 ENSMUSG00000096441.1 ENSMUSG00000096441 ENSMUST00000103807 Gm26140 miRNA Interval_72974 chr17 33903461 33904607 + 0 NA Intergenic Intergenic -1101 ENSMUSG00000092349.1 ENSMUSG00000092349 ENSMUST00000172817 Smim40 protein_coding Interval_159174 chr8 91365475 91366231 + 0 NA intron (ENSMUSG00000055932.15, intron 1 of 6) protein_coding-intron (ENSMUSG00000055932.15, intron 1 of 8) 26092 ENSMUSG00000110233.1 ENSMUSG00000110233 ENSMUST00000209572 Gm45427 TEC Interval_10679 chr1 172662355 172662729 + 0 NA Intergenic Intergenic 7094 ENSMUSG00000060128.5 ENSMUSG00000060128 ENSMUST00000073196 Gm2710 processed_pseudogene Interval_4585 chr1 75253013 75254711 + 0 NA intron (ENSMUSG00000026204.15, intron 13 of 22) protein_coding-intron (ENSMUSG00000026204.15, intron 13 of 22) 1540 ENSMUSG00000101840.1 ENSMUSG00000101840 ENSMUST00000191154 Gm28294 antisense Interval_73890 chr17 45295908 45296672 + 0 NA Intergenic Intergenic 86324 ENSMUSG00000096425.1 ENSMUSG00000096425 ENSMUST00000178626 Gm24979 miRNA Interval_82774 chr18 77014290 77015243 + 0 NA intron (ENSMUSG00000025420.13, intron 1 of 11) protein_coding-intron (ENSMUSG00000025420.13, intron 1 of 11) 32521 ENSMUSG00000025420.13 ENSMUSG00000025420 ENSMUST00000123650 Katnal2 protein_coding Interval_82074 chr18 67560202 67561919 + 0 NA intron (ENSMUSG00000024533.17, intron 2 of 16) protein_coding-intron (ENSMUSG00000024533.17, intron 2 of 16) -1334 ENSMUSG00000091695.2 ENSMUSG00000091695 ENSMUST00000163749 Gm17669 processed_pseudogene Interval_92002 chr2 52430590 52430805 + 0 NA exon (ENSMUSG00000017412.15, exon 14 of 14) protein_coding-exon (ENSMUSG00000017412.15, exon 14 of 14) 5685 ENSMUSG00000085315.7 ENSMUSG00000085315 ENSMUST00000143821 A430018G15Rik processed_transcript Interval_152620 chr7 135410100 135412165 + 0 NA intron (ENSMUSG00000048377.7, intron 1 of 1) protein_coding-intron (ENSMUSG00000048377.7, intron 1 of 1) 765 ENSMUSG00000048377.7 ENSMUSG00000048377 ENSMUST00000238917 Foxi2 protein_coding Interval_113064 chr4 47410877 47411067 + 0 NA TTS (ENSMUSG00000007613.15) protein_coding-TTS (ENSMUSG00000007613.15) -42660 ENSMUSG00000081152.1 ENSMUSG00000081152 ENSMUST00000121539 Gm12430 processed_pseudogene Interval_163598 chr9 22441179 22441417 + 0 NA intron (ENSMUSG00000036411.10, intron 4 of 4) protein_coding-intron (ENSMUSG00000036411.10, intron 6 of 6) -12992 ENSMUSG00000091159.1 ENSMUSG00000091159 ENSMUST00000168332 Gm17545 protein_coding Interval_48135 chr13 96534519 96535062 + 0 NA intron (ENSMUSG00000021668.15, intron 1 of 2) protein_coding-intron (ENSMUSG00000021668.15, intron 1 of 14) 7550 ENSMUSG00000021668.15 ENSMUSG00000021668 ENSMUST00000222100 Polk protein_coding Interval_129314 chr5 118980850 118981714 + 0 NA Intergenic Intergenic 15714 ENSMUSG00000107371.1 ENSMUSG00000107371 ENSMUST00000202922 Gm43784 TEC Interval_140631 chr6 120211093 120212622 + 0 NA intron (ENSMUSG00000041372.10, intron 14 of 19) protein_coding-intron (ENSMUSG00000041372.10, intron 14 of 19) -68107 ENSMUSG00000095086.1 ENSMUSG00000095086 ENSMUST00000180263 Gm25327 snRNA Interval_57704 chr15 16191981 16192504 + 0 NA Intergenic Intergenic 15711 ENSMUSG00000115434.1 ENSMUSG00000115434 ENSMUST00000227564 Gm6479 processed_pseudogene Interval_57480 chr15 11636888 11638060 + 0 NA exon (ENSMUSG00000115804.1, exon 2 of 3) lincRNA-exon (ENSMUSG00000115804.1, exon 2 of 3) -6728 ENSMUSG00000115076.1 ENSMUSG00000115076 ENSMUST00000228923 Gm49106 lincRNA Interval_112198 chr4 35571789 35571984 + 0 NA Intergenic Intergenic 135672 ENSMUSG00000083851.1 ENSMUSG00000083851 ENSMUST00000117931 Gm12365 processed_pseudogene Interval_94994 chr2 102743850 102744279 + 0 NA TTS (ENSMUSG00000087185.1) antisense-TTS (ENSMUSG00000087185.1) 2696 ENSMUSG00000087185.1 ENSMUSG00000087185 ENSMUST00000147082 Gm13872 antisense Interval_5627 chr1 90380407 90380592 + 0 NA Intergenic Intergenic 53187 ENSMUSG00000098368.1 ENSMUSG00000098368 ENSMUST00000184315 Gm27648 rRNA Interval_29151 chr11 80724753 80725044 + 0 NA intron (ENSMUSG00000035441.14, intron 1 of 9) protein_coding-intron (ENSMUSG00000035441.14, intron 1 of 21) 55105 ENSMUSG00000035441.14 ENSMUSG00000035441 ENSMUST00000125944 Myo1d protein_coding Interval_124553 chr5 50456028 50456334 + 0 NA intron (ENSMUSG00000105423.4, intron 10 of 10) processed_transcript-intron (ENSMUSG00000105423.4, intron 10 of 10) -61292 ENSMUSG00000106345.1 ENSMUSG00000106345 ENSMUST00000199679 Gm42459 processed_pseudogene Interval_92039 chr2 52804039 52804973 + 0 NA Intergenic Intergenic -53354 ENSMUSG00000036053.17 ENSMUSG00000036053 ENSMUST00000050719 Fmnl2 protein_coding Interval_141933 chr6 135541797 135542035 + 0 NA Intergenic Intergenic -42276 ENSMUSG00000065187.1 ENSMUSG00000065187 ENSMUST00000083253 Gm25136 snoRNA Interval_114246 chr4 69973877 69974754 + 0 NA Intergenic Intergenic -19039 ENSMUSG00000084342.1 ENSMUSG00000084342 ENSMUST00000120465 Gm11224 processed_pseudogene Interval_11295 chr1 180801701 180801947 + 0 NA TTS (ENSMUSG00000060743.12) protein_coding-TTS (ENSMUSG00000060743.12) -11952 ENSMUSG00000073485.3 ENSMUSG00000073485 ENSMUST00000097448 H3f3aos antisense Interval_139986 chr6 113219256 113219695 + 0 NA Intergenic Intergenic -25532 ENSMUSG00000042873.11 ENSMUSG00000042873 ENSMUST00000203665 Lhfpl4 protein_coding Interval_16547 chr10 63541430 63542667 + 0 NA intron (ENSMUSG00000060843.11, intron 3 of 17) protein_coding-intron (ENSMUSG00000060843.11, intron 2 of 16) -120259 ENSMUSG00000048185.5 ENSMUSG00000048185 ENSMUST00000054760 Gm7075 protein_coding Interval_121399 chr4 155522238 155522848 + 0 NA promoter-TSS (ENSMUSG00000029064.15) protein_coding-promoter-TSS (ENSMUSG00000029064.15) 81 ENSMUSG00000029064.15 ENSMUSG00000029064 ENSMUST00000176308 Gnb1 protein_coding Interval_141130 chr6 125164614 125167355 + 0 NA promoter-TSS (ENSMUSG00000057666.18) protein_coding-promoter-TSS (ENSMUSG00000057666.18) -981 ENSMUSG00000057666.18 ENSMUSG00000057666 ENSMUST00000144588 Gapdh protein_coding Interval_82269 chr18 69822155 69823549 + 0 NA Intergenic Intergenic -44807 ENSMUSG00000064706.1 ENSMUSG00000064706 ENSMUST00000082772 Gm22508 misc_RNA Interval_100240 chr2 167863854 167864760 + 0 NA Intergenic Intergenic 5722 ENSMUSG00000085411.1 ENSMUSG00000085411 ENSMUST00000142937 Gm14319 lincRNA Interval_121114 chr4 153204587 153205199 + 0 NA Intergenic Intergenic -13283 ENSMUSG00000087454.1 ENSMUSG00000087454 ENSMUST00000126141 Gm13174 lincRNA Interval_87146 chr19 46443753 46444560 + 0 NA intron (ENSMUSG00000025231.17, intron 2 of 5) protein_coding-intron (ENSMUSG00000025231.17, intron 3 of 11) 43032 ENSMUSG00000025231.17 ENSMUSG00000025231 ENSMUST00000144341 Sufu protein_coding Interval_173547 chrX 99129741 99130259 + 0 NA Intergenic Intergenic -8131 ENSMUSG00000031217.8 ENSMUSG00000031217 ENSMUST00000151750 Efnb1 protein_coding Interval_109947 chr3 152110958 152111692 + 0 NA intron (ENSMUSG00000039131.15, intron 3 of 5) protein_coding-intron (ENSMUSG00000039131.15, intron 3 of 5) 4886 ENSMUSG00000105698.1 ENSMUSG00000105698 ENSMUST00000198961 Gm31881 antisense Interval_41583 chr12 116547484 116547753 + 0 NA intron (ENSMUSG00000056553.14, intron 1 of 4) protein_coding-intron (ENSMUSG00000056553.14, intron 1 of 22) -39735 ENSMUSG00000101236.1 ENSMUSG00000101236 ENSMUST00000189273 Gm6750 processed_pseudogene Interval_65291 chr16 21272113 21272844 + 0 NA intron (ENSMUSG00000096918.2, intron 3 of 4) lincRNA-intron (ENSMUSG00000096918.2, intron 3 of 4) -16412 ENSMUSG00000098400.1 ENSMUSG00000098400 ENSMUST00000183640 Mir7680 miRNA Interval_69652 chr16 94878354 94878585 + 0 NA intron (ENSMUSG00000043301.16, intron 2 of 3) protein_coding-intron (ENSMUSG00000043301.16, intron 2 of 4) 9005 ENSMUSG00000095435.1 ENSMUSG00000095435 ENSMUST00000175509 Gm22745 miRNA Interval_127707 chr5 106895882 106896086 + 0 NA promoter-TSS (ENSMUSG00000043410.16) protein_coding-promoter-TSS (ENSMUSG00000043410.16) -10745 ENSMUSG00000067047.4 ENSMUSG00000067047 ENSMUST00000137795 Olfr719-ps unprocessed_pseudogene Interval_21635 chr11 3366226 3366491 + 0 NA intron (ENSMUSG00000020451.17, intron 1 of 3) protein_coding-intron (ENSMUSG00000020451.17, intron 2 of 15) -11447 ENSMUSG00000087055.1 ENSMUSG00000087055 ENSMUST00000142322 Gm11948 sense_intronic Interval_163428 chr9 21399632 21400340 + 0 NA exon (ENSMUSG00000032178.14, exon 17 of 20) protein_coding-exon (ENSMUSG00000032178.14, exon 17 of 20) 11434 ENSMUSG00000032178.14 ENSMUSG00000032178 ENSMUST00000214200 Ilf3 protein_coding Interval_110850 chr4 8956399 8956954 + 0 NA Intergenic Intergenic 15417 ENSMUSG00000083786.1 ENSMUSG00000083786 ENSMUST00000119493 Rps18-ps2 processed_pseudogene Interval_5692 chr1 90958632 90959427 + 0 NA TTS (ENSMUSG00000026304.13) protein_coding-TTS (ENSMUSG00000026304.13) 5921 ENSMUSG00000090550.2 ENSMUSG00000090550 ENSMUST00000166281 Prlh protein_coding Interval_106279 chr3 95097418 95097690 + 0 NA intron (ENSMUSG00000028126.16, intron 1 of 1) protein_coding-intron (ENSMUSG00000028126.16, intron 1 of 14) -1946 ENSMUSG00000064590.1 ENSMUSG00000064590 ENSMUST00000082656 Gm22301 snRNA Interval_65579 chr16 23522649 23523968 + 0 NA intron (ENSMUSG00000109783.1, intron 2 of 4) processed_transcript-intron (ENSMUSG00000109783.1, intron 2 of 3) -2660 ENSMUSG00000022887.9 ENSMUSG00000022887 ENSMUST00000229152 Masp1 protein_coding Interval_63932 chr16 4632058 4632791 + 0 NA TTS (ENSMUSG00000039637.15) protein_coding-TTS (ENSMUSG00000039637.15) 1435 ENSMUSG00000039637.15 ENSMUSG00000039637 ENSMUST00000127850 Coro7 protein_coding Interval_159471 chr8 94917138 94918274 + 0 NA promoter-TSS (ENSMUSG00000063605.5) protein_coding-promoter-TSS (ENSMUSG00000063605.5) -185 ENSMUSG00000063605.5 ENSMUSG00000063605 ENSMUST00000162020 Ccdc102a protein_coding Interval_50619 chr14 16723852 16724628 + 0 NA intron (ENSMUSG00000017491.9, intron 1 of 3) protein_coding-intron (ENSMUSG00000017491.9, intron 1 of 3) -148413 ENSMUSG00000017491.9 ENSMUSG00000017491 ENSMUST00000225245 Rarb protein_coding Interval_13124 chr10 11823746 11824086 + 0 NA TTS (ENSMUSG00000111995.1) lincRNA-TTS (ENSMUSG00000111995.1) 14979 ENSMUSG00000112233.1 ENSMUSG00000112233 ENSMUST00000219464 Gm48698 processed_pseudogene Interval_93177 chr2 70871762 70872242 + 0 NA Intergenic Intergenic -5827 ENSMUSG00000085868.1 ENSMUSG00000085868 ENSMUST00000150119 Gm13632 lincRNA Interval_127051 chr5 99957057 99957287 + 0 NA exon (ENSMUSG00000000568.15, exon 9 of 9) protein_coding-exon (ENSMUSG00000000568.15, exon 9 of 9) -20514 ENSMUSG00000091623.2 ENSMUSG00000091623 ENSMUST00000046721 Gm17092 antisense Interval_138855 chr6 92598460 92598672 + 0 NA intron (ENSMUSG00000030020.13, intron 2 of 8) protein_coding-intron (ENSMUSG00000030020.13, intron 2 of 8) -31200 ENSMUSG00000030020.13 ENSMUSG00000030020 ENSMUST00000113445 Prickle2 protein_coding Interval_123656 chr5 34326383 34327664 + 0 NA exon (ENSMUSG00000109572.1, exon 15 of 16) protein_coding-exon (ENSMUSG00000109572.1, exon 15 of 16) 507 ENSMUSG00000107287.1 ENSMUSG00000107287 ENSMUST00000200791 Gm43458 lincRNA Interval_118764 chr4 133601657 133602331 + 0 NA exon (ENSMUSG00000047281.3, exon 1 of 1) protein_coding-exon (ENSMUSG00000047281.3, exon 1 of 1) 174 ENSMUSG00000047281.3 ENSMUSG00000047281 ENSMUST00000057311 Sfn protein_coding Interval_48064 chr13 95682287 95682644 + 0 NA promoter-TSS (ENSMUSG00000021676.10) protein_coding-promoter-TSS (ENSMUSG00000021676.10) -2680 ENSMUSG00000113631.1 ENSMUSG00000113631 ENSMUST00000221667 Gm48745 TEC Interval_29496 chr11 84451341 84451667 + 0 NA intron (ENSMUSG00000018697.14, intron 5 of 8) protein_coding-intron (ENSMUSG00000018697.14, intron 9 of 12) 62018 ENSMUSG00000018697.14 ENSMUSG00000018697 ENSMUST00000148434 Aatf protein_coding Interval_12999 chr10 9030678 9030903 + 0 NA Intergenic Intergenic 40685 ENSMUSG00000111077.1 ENSMUSG00000111077 ENSMUST00000216441 Gm48743 TEC Interval_70389 chr17 9675389 9676898 + 0 NA Intergenic Intergenic -6426 ENSMUSG00000046173.3 ENSMUSG00000046173 ENSMUST00000057190 Pabpc6 protein_coding Interval_128708 chr5 114848384 114849518 + 0 NA Intergenic Intergenic -2997 ENSMUSG00000098343.1 ENSMUSG00000098343 ENSMUST00000184281 Mir6240 miRNA Interval_109021 chr3 135211845 135213221 + 0 NA promoter-TSS (ENSMUSG00000045328.11) protein_coding-promoter-TSS (ENSMUSG00000045328.11) 3546 ENSMUSG00000106079.1 ENSMUSG00000106079 ENSMUST00000199682 Gm43033 processed_pseudogene Interval_162936 chr9 13560304 13561134 + 0 NA intron (ENSMUSG00000031925.17, intron 1 of 4) protein_coding-intron (ENSMUSG00000031925.17, intron 1 of 4) 40783 ENSMUSG00000111223.1 ENSMUSG00000111223 ENSMUST00000213741 Gm47089 TEC Interval_134343 chr6 25808755 25809850 + 0 NA promoter-TSS (ENSMUSG00000029676.15) protein_coding-promoter-TSS (ENSMUSG00000029676.15) -11285 ENSMUSG00000029676.15 ENSMUSG00000029676 ENSMUST00000147970 Pot1a protein_coding Interval_110183 chr3 154046786 154047162 + 0 NA promoter-TSS (ENSMUSG00000028360.10) protein_coding-promoter-TSS (ENSMUSG00000028360.10) 51 ENSMUSG00000028360.10 ENSMUSG00000028360 ENSMUST00000144677 Slc44a5 protein_coding Interval_147846 chr7 74138042 74138472 + 0 NA Intergenic Intergenic -94519 ENSMUSG00000108725.1 ENSMUSG00000108725 ENSMUST00000205302 Gm45004 lincRNA Interval_164753 chr9 41117857 41118114 + 0 NA intron (ENSMUSG00000032020.15, intron 1 of 3) protein_coding-intron (ENSMUSG00000032020.15, intron 1 of 13) -5904 ENSMUSG00000110914.1 ENSMUSG00000110914 ENSMUST00000217288 Gm48611 TEC Interval_26022 chr11 53519293 53520822 + 0 NA intron (ENSMUSG00000018398.18, intron 1 of 9) protein_coding-intron (ENSMUSG00000018398.18, intron 1 of 9) 130 ENSMUSG00000018398.18 ENSMUSG00000018398 ENSMUST00000145927 Septin8 protein_coding Interval_2405 chr1 39026883 39027082 + 0 NA Intergenic Intergenic 30655 ENSMUSG00000104188.1 ENSMUSG00000104188 ENSMUST00000195476 Gm37821 lincRNA Interval_172937 chrX 56731045 56732273 + 0 NA promoter-TSS (ENSMUSG00000023092.16) protein_coding-promoter-TSS (ENSMUSG00000023092.16) 6586 ENSMUSG00000088394.1 ENSMUSG00000088394 ENSMUST00000157769 Gm26312 snRNA Interval_45495 chr13 55463750 55465073 + 0 NA exon (ENSMUSG00000034686.8, exon 1 of 3) protein_coding-exon (ENSMUSG00000034686.8, exon 1 of 3) 144 ENSMUSG00000034686.8 ENSMUSG00000034686 ENSMUST00000046533 Prr7 protein_coding Interval_169276 chr9 96069326 96069649 + 0 NA Intergenic Intergenic -28814 ENSMUSG00000100931.1 ENSMUSG00000100931 ENSMUST00000189281 Gm28085 antisense Interval_130420 chr5 127485353 127485698 + 0 NA intron (ENSMUSG00000034324.16, intron 3 of 8) protein_coding-intron (ENSMUSG00000034324.16, intron 3 of 8) -67729 ENSMUSG00000034324.16 ENSMUSG00000034324 ENSMUST00000145748 Tmem132c protein_coding Interval_159094 chr8 90330594 90331333 + 0 NA intron (ENSMUSG00000043668.13, intron 1 of 5) protein_coding-intron (ENSMUSG00000043668.13, intron 1 of 6) 17168 ENSMUSG00000043668.13 ENSMUSG00000043668 ENSMUST00000176034 Tox3 protein_coding Interval_138923 chr6 93574196 93575526 + 0 NA Intergenic Intergenic 65288 ENSMUSG00000088630.1 ENSMUSG00000088630 ENSMUST00000158005 Gm22312 snoRNA Interval_97139 chr2 131591855 131592089 + 0 NA Intergenic Intergenic -29689 ENSMUSG00000027335.9 ENSMUSG00000027335 ENSMUST00000103184 Adra1d protein_coding Interval_146602 chr7 47349021 47349464 + 0 NA promoter-TSS (ENSMUSG00000109164.1) processed_pseudogene-promoter-TSS (ENSMUSG00000109164.1) -211 ENSMUSG00000109164.1 ENSMUSG00000109164 ENSMUST00000209100 Gm45085 processed_pseudogene Interval_116772 chr4 117218482 117219454 + 0 NA intron (ENSMUSG00000060268.12, intron 7 of 12) protein_coding-intron (ENSMUSG00000060268.12, intron 7 of 7) -5186 ENSMUSG00000086482.1 ENSMUSG00000086482 ENSMUST00000141554 1700012C08Rik processed_transcript Interval_91103 chr2 35109771 35110347 + 0 NA intron (ENSMUSG00000057110.15, intron 1 of 42) protein_coding-intron (ENSMUSG00000057110.15, intron 1 of 10) -9370 ENSMUSG00000035875.15 ENSMUSG00000035875 ENSMUST00000154817 AI182371 protein_coding Interval_53616 chr14 60123366 60123750 + 0 NA intron (ENSMUSG00000021983.16, intron 1 of 6) protein_coding-intron (ENSMUSG00000021983.16, intron 1 of 6) -17505 ENSMUSG00000075288.2 ENSMUSG00000075288 ENSMUST00000100019 Gm6913 processed_pseudogene Interval_40933 chr12 109999400 110000004 + 0 NA intron (ENSMUSG00000113063.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000113063.1, intron 1 of 2) 24171 ENSMUSG00000113063.1 ENSMUSG00000113063 ENSMUST00000222974 Gm34667 lincRNA Interval_44660 chr13 46994152 46994368 + 0 NA intron (ENSMUSG00000051606.5, intron 2 of 6) processed_transcript-intron (ENSMUSG00000051606.5, intron 2 of 2) 13540 ENSMUSG00000089131.1 ENSMUSG00000089131 ENSMUST00000158506 Gm24769 snoRNA Interval_78993 chr18 23773032 23774920 + 0 NA TTS (ENSMUSG00000098607.1) miRNA-TTS (ENSMUSG00000098607.1) 1013 ENSMUSG00000098607.1 ENSMUSG00000098607 ENSMUST00000184278 Mir6360 miRNA Interval_21830 chr11 4625806 4626430 + 0 NA intron (ENSMUSG00000056288.11, intron 3 of 3) antisense-intron (ENSMUSG00000056288.11, intron 2 of 2) 3893 ENSMUSG00000056288.11 ENSMUSG00000056288 ENSMUST00000141157 Gm11961 antisense Interval_107255 chr3 105008011 105008385 + 0 NA exon (ENSMUSG00000062127.11, exon 4 of 5) protein_coding-exon (ENSMUSG00000062127.11, exon 4 of 5) 14166 ENSMUSG00000105355.1 ENSMUSG00000105355 ENSMUST00000198827 Gm40117 antisense Interval_54840 chr14 75753704 75754846 + 0 NA exon (ENSMUSG00000034893.9, exon 1 of 23) protein_coding-exon (ENSMUSG00000034893.9, exon 1 of 23) -8335 ENSMUSG00000089405.1 ENSMUSG00000089405 ENSMUST00000158780 Gm24876 rRNA Interval_130835 chr5 131100084 131100353 + 0 NA intron (ENSMUSG00000034040.16, intron 3 of 3) protein_coding-intron (ENSMUSG00000034040.16, intron 3 of 10) 34493 ENSMUSG00000106710.1 ENSMUSG00000106710 ENSMUST00000202871 Gm43166 sense_intronic Interval_67446 chr16 48729431 48729942 + 0 NA Intergenic Intergenic 20762 ENSMUSG00000116640.1 ENSMUSG00000116640 ENSMUST00000231404 Gm8670 processed_pseudogene Interval_167206 chr9 66157870 66158782 + 0 NA promoter-TSS (ENSMUSG00000032380.9) protein_coding-promoter-TSS (ENSMUSG00000032380.9) 100 ENSMUSG00000032380.9 ENSMUSG00000032380 ENSMUST00000129778 Dapk2 protein_coding Interval_174685 chrX 162901366 162902590 + 0 NA promoter-TSS (ENSMUSG00000031360.14) protein_coding-promoter-TSS (ENSMUSG00000031360.14) 193 ENSMUSG00000031360.14 ENSMUSG00000031360 ENSMUST00000112300 Ctps2 protein_coding Interval_100973 chr2 173757262 173758237 + 0 NA intron (ENSMUSG00000054455.5, intron 1 of 5) protein_coding-intron (ENSMUSG00000054455.5, intron 1 of 5) 7811 ENSMUSG00000118399.1 ENSMUSG00000118399 ENSMUST00000238291 Gm18917 processed_pseudogene Interval_144508 chr7 25574493 25577111 + 0 NA Intergenic Intergenic 1996 ENSMUSG00000108579.1 ENSMUSG00000108579 ENSMUST00000205635 Gm29918 lincRNA Interval_67608 chr16 52243967 52244157 + 0 NA Intergenic Intergenic 91536 ENSMUSG00000022637.11 ENSMUSG00000022637 ENSMUST00000228247 Cblb protein_coding Interval_59787 chr15 59269353 59270678 + 0 NA Intergenic Intergenic -5381 ENSMUSG00000115118.1 ENSMUSG00000115118 ENSMUST00000227185 Gm36617 lincRNA Interval_73236 chr17 35719896 35720795 + 0 NA Intergenic Intergenic 16449 ENSMUSG00000086867.1 ENSMUSG00000086867 ENSMUST00000135203 Gm4577 antisense Interval_163808 chr9 26578566 26578934 + 0 NA Intergenic Intergenic -28797 ENSMUSG00000111066.1 ENSMUSG00000111066 ENSMUST00000216806 Gm30313 lincRNA Interval_168499 chr9 82609163 82609392 + 0 NA Intergenic Intergenic 84286 ENSMUSG00000098420.1 ENSMUSG00000098420 ENSMUST00000185049 Gm27249 processed_pseudogene Interval_122318 chr5 21257231 21258220 + 0 NA intron (ENSMUSG00000039934.12, intron 17 of 26) protein_coding-intron (ENSMUSG00000039934.12, intron 18 of 30) 21896 ENSMUSG00000105275.1 ENSMUSG00000105275 ENSMUST00000199242 Gm43214 processed_pseudogene Interval_52461 chr14 46702728 46703789 + 0 NA Intergenic Intergenic -29483 ENSMUSG00000115015.1 ENSMUSG00000115015 ENSMUST00000226949 D330046F09Rik lincRNA Interval_40260 chr12 102823826 102824050 + 0 NA intron (ENSMUSG00000041702.7, intron 4 of 11) protein_coding-intron (ENSMUSG00000041702.7, intron 3 of 10) -14170 ENSMUSG00000113907.1 ENSMUSG00000113907 ENSMUST00000220987 Gm47167 antisense Interval_168733 chr9 86527494 86527737 + 0 NA intron (ENSMUSG00000034973.16, intron 24 of 37) protein_coding-intron (ENSMUSG00000034973.16, intron 23 of 36) 19180 ENSMUSG00000103731.1 ENSMUSG00000103731 ENSMUST00000194336 Gm17530 TEC Interval_86866 chr19 44479393 44479630 + 0 NA Intergenic Intergenic 26494 ENSMUSG00000117796.1 ENSMUSG00000117796 ENSMUST00000237075 Gm35406 lincRNA Interval_55999 chr14 103898765 103899713 + 0 NA Intergenic Intergenic -48857 ENSMUSG00000104311.1 ENSMUSG00000104311 ENSMUST00000194770 Gm37910 TEC Interval_55302 chr14 81571055 81571519 + 0 NA Intergenic Intergenic -114523 ENSMUSG00000115455.1 ENSMUSG00000115455 ENSMUST00000227374 Gm41219 lincRNA Interval_57141 chr15 6899981 6901519 + 0 NA Intergenic Intergenic -26493 ENSMUSG00000022146.12 ENSMUSG00000022146 ENSMUST00000177263 Osmr protein_coding Interval_59164 chr15 45691697 45692037 + 0 NA Intergenic Intergenic -270659 ENSMUSG00000115549.1 ENSMUSG00000115549 ENSMUST00000228018 Gm2203 processed_pseudogene Interval_11082 chr1 179229403 179229983 + 0 NA intron (ENSMUSG00000055067.15, intron 1 of 8) protein_coding-intron (ENSMUSG00000055067.15, intron 1 of 8) 288312 ENSMUSG00000055067.15 ENSMUSG00000055067 ENSMUST00000194237 Smyd3 protein_coding Interval_53125 chr14 54597010 54597539 + 0 NA intron (ENSMUSG00000022179.5, intron 1 of 6) protein_coding-intron (ENSMUSG00000022179.5, intron 1 of 6) -11775 ENSMUSG00000022179.5 ENSMUSG00000022179 ENSMUST00000228422 4931414P19Rik protein_coding Interval_77529 chr17 90858623 90859710 + 0 NA intron (ENSMUSG00000024109.18, intron 1 of 12) protein_coding-intron (ENSMUSG00000024109.18, intron 4 of 20) -2003 ENSMUSG00000090160.1 ENSMUSG00000090160 ENSMUST00000162121 4930480K15Rik antisense Interval_59202 chr15 47917265 47917651 + 0 NA intron (ENSMUSG00000022311.15, intron 22 of 70) protein_coding-intron (ENSMUSG00000022311.15, intron 22 of 70) 116785 ENSMUSG00000077752.1 ENSMUSG00000077752 ENSMUST00000104564 Gm23530 snoRNA Interval_119052 chr4 135238878 135239123 + 0 NA intron (ENSMUSG00000037242.8, intron 1 of 2) protein_coding-intron (ENSMUSG00000037242.8, intron 1 of 5) 33814 ENSMUSG00000037242.8 ENSMUSG00000037242 ENSMUST00000143370 Clic4 protein_coding Interval_174565 chrX 158042249 158044056 + 0 NA exon (ENSMUSG00000025658.16, exon 1 of 22) protein_coding-exon (ENSMUSG00000025658.16, exon 1 of 22) -106944 ENSMUSG00000082076.1 ENSMUSG00000082076 ENSMUST00000120024 Gm8659 processed_pseudogene Interval_58883 chr15 39686859 39687550 + 0 NA Intergenic Intergenic -58730 ENSMUSG00000022303.9 ENSMUSG00000022303 ENSMUST00000227792 Dcstamp protein_coding Interval_70011 chr17 4403958 4404625 + 0 NA Intergenic Intergenic -230687 ENSMUSG00000116767.1 ENSMUSG00000116767 ENSMUST00000232624 4930517M08Rik lincRNA Interval_45659 chr13 56630581 56630917 + 0 NA promoter-TSS (ENSMUSG00000035493.10) protein_coding-promoter-TSS (ENSMUSG00000035493.10) -464 ENSMUSG00000035493.10 ENSMUSG00000035493 ENSMUST00000226024 Tgfbi protein_coding Interval_135359 chr6 38603038 38603413 + 0 NA intron (ENSMUSG00000029823.16, intron 9 of 10) protein_coding-intron (ENSMUSG00000029823.16, intron 8 of 9) 34008 ENSMUSG00000071537.6 ENSMUSG00000071537 ENSMUST00000201345 Klrg2 protein_coding Interval_166404 chr9 59155531 59155732 + 0 NA Intergenic Intergenic -9421 ENSMUSG00000066592.3 ENSMUSG00000066592 ENSMUST00000085631 Gm7589 processed_pseudogene Interval_173365 chrX 85076717 85078018 + 0 NA intron (ENSMUSG00000045103.19, intron 35 of 50) protein_coding-intron (ENSMUSG00000045103.19, intron 2 of 17) 159199 ENSMUSG00000081379.1 ENSMUSG00000081379 ENSMUST00000118249 Gm14771 processed_pseudogene Interval_81867 chr18 65512149 65512697 + 0 NA Intergenic Intergenic 11017 ENSMUSG00000118389.1 ENSMUSG00000118389 ENSMUST00000237946 Gm50246 processed_pseudogene Interval_33326 chr11 115944911 115947391 + 0 NA TTS (ENSMUSG00000087064.1) antisense-TTS (ENSMUSG00000087064.1) 5954 ENSMUSG00000087064.1 ENSMUSG00000087064 ENSMUST00000132264 Sap30bpos antisense Interval_32939 chr11 113257809 113258310 + 0 NA intron (ENSMUSG00000041654.15, intron 7 of 9) protein_coding-intron (ENSMUSG00000041654.15, intron 8 of 10) -48390 ENSMUSG00000085421.1 ENSMUSG00000085421 ENSMUST00000130373 4732490B19Rik lincRNA Interval_59278 chr15 50685747 50686026 + 0 NA intron (ENSMUSG00000038679.16, intron 7 of 8) protein_coding-intron (ENSMUSG00000038679.16, intron 5 of 6) 203228 ENSMUSG00000084458.1 ENSMUSG00000084458 ENSMUST00000122509 Mir1907 miRNA Interval_144503 chr7 25517495 25517932 + 0 NA TTS (ENSMUSG00000054385.14) protein_coding-TTS (ENSMUSG00000054385.14) 19380 ENSMUSG00000054385.14 ENSMUSG00000054385 ENSMUST00000145681 Ceacam2 protein_coding Interval_13143 chr10 12384769 12385796 + 0 NA intron (ENSMUSG00000019820.11, intron 24 of 24) protein_coding-intron (ENSMUSG00000019820.11, intron 73 of 73) 16659 ENSMUSG00000065181.1 ENSMUSG00000065181 ENSMUST00000083247 Gm25139 snoRNA Interval_72365 chr17 29431933 29432156 + 0 NA promoter-TSS (ENSMUSG00000117427.1) lincRNA-promoter-TSS (ENSMUSG00000117427.1) 2713 ENSMUSG00000117575.1 ENSMUSG00000117575 ENSMUST00000234181 Gm36486 processed_transcript Interval_68577 chr16 79121166 79121724 + 0 NA Intergenic Intergenic -30348 ENSMUSG00000022857.13 ENSMUSG00000022857 ENSMUST00000060402 Tmprss15 protein_coding Interval_158230 chr8 80205113 80205460 + 0 NA Intergenic Intergenic 10087 ENSMUSG00000110294.1 ENSMUSG00000110294 ENSMUST00000211276 Gm45430 lincRNA Interval_44619 chr13 46757827 46759627 + 0 NA intron (ENSMUSG00000021375.11, intron 36 of 37) protein_coding-intron (ENSMUSG00000021375.11, intron 36 of 37) 8922 ENSMUSG00000064558.1 ENSMUSG00000064558 ENSMUST00000082624 Gm24620 snoRNA Interval_70609 chr17 12300946 12301480 + 0 NA TTS (ENSMUSG00000077476.1) snoRNA-TTS (ENSMUSG00000077476.1) 177 ENSMUSG00000077476.1 ENSMUSG00000077476 ENSMUST00000104288 Gm24794 snoRNA Interval_27134 chr11 63213155 63214644 + 0 NA Intergenic Intergenic 27576 ENSMUSG00000083052.1 ENSMUSG00000083052 ENSMUST00000117347 Gm12285 processed_pseudogene Interval_44533 chr13 45820263 45821807 + 0 NA intron (ENSMUSG00000046876.16, intron 2 of 2) protein_coding-intron (ENSMUSG00000046876.16, intron 3 of 7) 71463 ENSMUSG00000114131.1 ENSMUSG00000114131 ENSMUST00000221126 Gm47460 antisense Interval_101410 chr2 181127394 181128466 + 0 NA intron (ENSMUSG00000016346.17, intron 1 of 14) protein_coding-intron (ENSMUSG00000016346.17, intron 1 of 16) -18174 ENSMUSG00000016346.17 ENSMUSG00000016346 ENSMUST00000140789 Kcnq2 protein_coding Interval_3735 chr1 62650183 62651235 + 0 NA Intergenic Intergenic 7079 ENSMUSG00000081950.1 ENSMUSG00000081950 ENSMUST00000119592 Gm11600 processed_pseudogene Interval_1872 chr1 34225392 34225795 + 0 NA exon (ENSMUSG00000026131.20, exon 56 of 98) protein_coding-exon (ENSMUSG00000026131.20, exon 56 of 98) 45535 ENSMUSG00000103001.1 ENSMUSG00000103001 ENSMUST00000194920 A930005N03Rik TEC Interval_156510 chr8 48827432 48829003 + 0 NA intron (ENSMUSG00000031561.16, intron 1 of 2) protein_coding-intron (ENSMUSG00000031561.16, intron 1 of 2) -15505 ENSMUSG00000100706.6 ENSMUSG00000100706 ENSMUST00000188936 Gm19744 processed_transcript Interval_173200 chrX 74031553 74032984 + 0 NA exon (ENSMUSG00000031393.16, exon 4 of 4) protein_coding-exon (ENSMUSG00000031393.16, exon 4 of 4) -8332 ENSMUSG00000076127.1 ENSMUSG00000076127 ENSMUST00000102173 Mir718 miRNA Interval_121885 chr5 9150974 9151236 + 0 NA exon (ENSMUSG00000042508.16, exon 2 of 18) protein_coding-exon (ENSMUSG00000042508.16, exon 2 of 18) -4628 ENSMUSG00000079659.5 ENSMUSG00000079659 ENSMUST00000200542 Tmem243 protein_coding Interval_54719 chr14 73563450 73564586 + 0 NA intron (ENSMUSG00000022110.13, intron 2 of 10) protein_coding-intron (ENSMUSG00000022110.13, intron 2 of 11) 11386 ENSMUSG00000022110.13 ENSMUSG00000022110 ENSMUST00000159165 Sucla2 protein_coding Interval_109476 chr3 142787122 142787300 + 0 NA Intergenic Intergenic -7891 ENSMUSG00000087795.1 ENSMUSG00000087795 ENSMUST00000157170 Gm25965 snoRNA Interval_92105 chr2 53221944 53222388 + 0 NA Intergenic Intergenic 30440 ENSMUSG00000026960.6 ENSMUSG00000026960 ENSMUST00000028336 Arl6ip6 protein_coding Interval_51788 chr14 32201461 32202945 + 0 NA promoter-TSS (ENSMUSG00000013701.13) protein_coding-promoter-TSS (ENSMUSG00000013701.13) -357 ENSMUSG00000013701.13 ENSMUSG00000013701 ENSMUST00000168813 Timm23 protein_coding Interval_48048 chr13 95556447 95557782 + 0 NA Intergenic Intergenic 21524 ENSMUSG00000113359.1 ENSMUSG00000113359 ENSMUST00000220746 Gm48730 lincRNA Interval_35305 chr12 20304522 20305154 + 0 NA TTS (ENSMUSG00000116774.1) unprocessed_pseudogene-TTS (ENSMUSG00000116774.1) 546 ENSMUSG00000116774.1 ENSMUSG00000116774 ENSMUST00000232194 Gm49690 unprocessed_pseudogene Interval_129598 chr5 121214808 121215613 + 0 NA Intergenic Intergenic 8486 ENSMUSG00000029614.13 ENSMUSG00000029614 ENSMUST00000138621 Rpl6 protein_coding Interval_63803 chr15 103536912 103539005 + 0 NA promoter-TSS (ENSMUSG00000022490.7) protein_coding-promoter-TSS (ENSMUSG00000022490.7) 36 ENSMUSG00000022490.7 ENSMUSG00000022490 ENSMUST00000228813 Ppp1r1a protein_coding Interval_38164 chr12 76085971 76087200 + 0 NA intron (ENSMUSG00000063450.14, intron 1 of 3) protein_coding-intron (ENSMUSG00000063450.14, intron 99 of 115) 66042 ENSMUSG00000046580.10 ENSMUSG00000046580 ENSMUST00000121461 Gm7862 processed_pseudogene Interval_85445 chr19 26520259 26521323 + 0 NA Intergenic Intergenic -9961 ENSMUSG00000117803.1 ENSMUSG00000117803 ENSMUST00000236657 Gm50379 processed_pseudogene Interval_168195 chr9 77898498 77898915 + 0 NA Intergenic Intergenic -2823 ENSMUSG00000110724.1 ENSMUSG00000110724 ENSMUST00000217099 Gm47824 TEC Interval_83887 chr19 5365894 5367554 + 0 NA promoter-TSS (ENSMUSG00000024841.8) protein_coding-promoter-TSS (ENSMUSG00000024841.8) 67 ENSMUSG00000024844.15 ENSMUSG00000024844 ENSMUST00000237167 Banf1 protein_coding Interval_115712 chr4 102955322 102956263 + 0 NA intron (ENSMUSG00000028524.21, intron 10 of 16) protein_coding-intron (ENSMUSG00000028524.21, intron 17 of 23) -22899 ENSMUSG00000028523.14 ENSMUSG00000028523 ENSMUST00000139883 Tctex1d1 protein_coding Interval_146124 chr7 44179659 44180040 + 0 NA Intergenic Intergenic -8387 ENSMUSG00000063713.7 ENSMUSG00000063713 ENSMUST00000073713 Klk1b24 protein_coding Interval_124427 chr5 46182057 46182408 + 0 NA Intergenic Intergenic -232112 ENSMUSG00000067321.5 ENSMUSG00000067321 ENSMUST00000121537 Gm7931 processed_pseudogene Interval_152561 chr7 134545774 134546612 + 0 NA Intergenic Intergenic -47209 ENSMUSG00000030994.16 ENSMUSG00000030994 ENSMUST00000205334 D7Ertd443e protein_coding Interval_16182 chr10 61275626 61276138 + 0 NA Intergenic Intergenic -2640 ENSMUSG00000059901.12 ENSMUSG00000059901 ENSMUST00000120336 Adamts14 protein_coding Interval_33760 chr11 118316912 118317653 + 0 NA intron (ENSMUSG00000017466.9, intron 3 of 4) protein_coding-intron (ENSMUSG00000017466.9, intron 3 of 4) 16734 ENSMUSG00000076433.4 ENSMUSG00000076433 ENSMUST00000168100 Cep295nl protein_coding Interval_145207 chr7 30649689 30650733 + 0 NA promoter-TSS (ENSMUSG00000036733.16) protein_coding-promoter-TSS (ENSMUSG00000036733.16) -4224 ENSMUSG00000036733.16 ENSMUSG00000036733 ENSMUST00000140550 Rbm42 protein_coding Interval_112204 chr4 35613022 35613532 + 0 NA Intergenic Intergenic 177063 ENSMUSG00000083851.1 ENSMUSG00000083851 ENSMUST00000117931 Gm12365 processed_pseudogene Interval_129391 chr5 119690878 119691558 + 0 NA promoter-TSS (ENSMUSG00000086847.1) lincRNA-promoter-TSS (ENSMUSG00000086847.1) 0 ENSMUSG00000086847.1 ENSMUSG00000086847 ENSMUST00000135385 Tbx3os2 lincRNA Interval_117810 chr4 126343188 126343651 + 0 NA exon (ENSMUSG00000028842.15, exon 19 of 19) protein_coding-exon (ENSMUSG00000028842.15, exon 19 of 19) -17789 ENSMUSG00000028845.15 ENSMUSG00000028845 ENSMUST00000141990 Tekt2 protein_coding Interval_44178 chr13 41613319 41613556 + 0 NA intron (ENSMUSG00000087370.3, intron 1 of 1) protein_coding-intron (ENSMUSG00000087370.3, intron 1 of 2) 7530 ENSMUSG00000087370.3 ENSMUSG00000087370 ENSMUST00000129449 Tmem170b protein_coding Interval_3091 chr1 53187073 53187984 + 0 NA promoter-TSS (ENSMUSG00000060715.9) protein_coding-promoter-TSS (ENSMUSG00000060715.9) 80 ENSMUSG00000060715.9 ENSMUSG00000060715 ENSMUST00000190748 1700019A02Rik protein_coding Interval_21818 chr11 4544992 4545803 + 0 NA intron (ENSMUSG00000034354.17, intron 1 of 17) protein_coding-intron (ENSMUSG00000034354.17, intron 1 of 17) -16383 ENSMUSG00000081974.3 ENSMUSG00000081974 ENSMUST00000122068 Gm11960 transcribed_processed_pseudogene Interval_153244 chr7 142810268 142811391 + 0 NA Intergenic Intergenic -4423 ENSMUSG00000073781.4 ENSMUSG00000073781 ENSMUST00000097935 Gm6471 lincRNA Interval_142450 chr6 142402793 142403360 + 0 NA exon (ENSMUSG00000030245.10, exon 5 of 5) protein_coding-exon (ENSMUSG00000030245.10, exon 5 of 5) -10365 ENSMUSG00000071112.12 ENSMUSG00000071112 ENSMUST00000123209 Spx protein_coding Interval_168846 chr9 88005238 88006127 + 0 NA Intergenic Intergenic 15867 ENSMUSG00000077553.1 ENSMUSG00000077553 ENSMUST00000104365 Gm23176 snoRNA Interval_102196 chr3 19355712 19356596 + 0 NA Intergenic Intergenic 25381 ENSMUSG00000089149.1 ENSMUSG00000089149 ENSMUST00000158524 Gm22282 misc_RNA Interval_93017 chr2 69612209 69613463 + 0 NA Intergenic Intergenic -34394 ENSMUSG00000063145.10 ENSMUSG00000063145 ENSMUST00000127806 Bbs5 protein_coding Interval_28350 chr11 75327544 75328259 + 0 NA intron (ENSMUSG00000000751.13, intron 5 of 6) protein_coding-intron (ENSMUSG00000000751.13, intron 6 of 17) -9293 ENSMUSG00000106179.1 ENSMUSG00000106179 ENSMUST00000198372 Gm47300 miRNA Interval_93509 chr2 73650836 73651128 + 0 NA intron (ENSMUSG00000056486.18, intron 7 of 9) protein_coding-intron (ENSMUSG00000056486.18, intron 1 of 6) -7288 ENSMUSG00000085838.1 ENSMUSG00000085838 ENSMUST00000123613 Chn1os1 antisense Interval_103518 chr3 46447033 46448406 + 0 NA intron (ENSMUSG00000090919.6, intron 1 of 2) protein_coding-intron (ENSMUSG00000090919.6, intron 1 of 1) 201 ENSMUSG00000090919.6 ENSMUSG00000090919 ENSMUST00000195537 Pabpc4l protein_coding Interval_20666 chr10 120128970 120129806 + 0 NA Intergenic Intergenic -16523 ENSMUSG00000020228.11 ENSMUSG00000020228 ENSMUST00000154501 Helb protein_coding Interval_42833 chr13 20125518 20126244 + 0 NA intron (ENSMUSG00000041112.17, intron 1 of 13) protein_coding-intron (ENSMUSG00000041112.17, intron 1 of 21) -130077 ENSMUSG00000050243.6 ENSMUSG00000050243 ENSMUST00000091762 Gm5446 processed_pseudogene Interval_66450 chr16 33941177 33941886 + 0 NA intron (ENSMUSG00000022817.15, intron 7 of 10) protein_coding-intron (ENSMUSG00000022817.15, intron 11 of 14) -24708 ENSMUSG00000086083.1 ENSMUSG00000086083 ENSMUST00000145415 Gm15829 antisense Interval_46548 chr13 67044374 67044672 + 0 NA intron (ENSMUSG00000090641.2, intron 3 of 3) protein_coding-intron (ENSMUSG00000090641.2, intron 3 of 3) -6212 ENSMUSG00000114834.1 ENSMUSG00000114834 ENSMUST00000223867 Gm48705 processed_pseudogene Interval_75972 chr17 73984677 73985040 + 0 NA Intergenic Intergenic -16002 ENSMUSG00000088060.1 ENSMUSG00000088060 ENSMUST00000157435 Gm24475 snoRNA Interval_110807 chr4 8598134 8599160 + 0 NA intron (ENSMUSG00000047187.9, intron 6 of 7) protein_coding-intron (ENSMUSG00000047187.9, intron 6 of 7) 63003 ENSMUSG00000047187.9 ENSMUSG00000047187 ENSMUST00000060232 Rab2a protein_coding Interval_20408 chr10 117390100 117391347 + 0 NA intron (ENSMUSG00000112728.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000112728.1, intron 1 of 1) 701 ENSMUSG00000112728.1 ENSMUSG00000112728 ENSMUST00000219525 Gm48903 lincRNA Interval_124611 chr5 52357786 52358548 + 0 NA Intergenic Intergenic -5624 ENSMUSG00000072941.5 ENSMUSG00000072941 ENSMUST00000101208 Sod3 protein_coding Interval_65517 chr16 23020266 23021347 + 0 NA intron (ENSMUSG00000060459.14, intron 4 of 5) protein_coding-intron (ENSMUSG00000060459.14, intron 3 of 10) -3768 ENSMUSG00000090021.2 ENSMUSG00000090021 ENSMUST00000159889 Gm6493 processed_pseudogene Interval_62262 chr15 89281595 89282963 + 0 NA intron (ENSMUSG00000036561.9, intron 22 of 24) protein_coding-intron (ENSMUSG00000036561.9, intron 18 of 20) 11531 ENSMUSG00000036529.17 ENSMUSG00000036529 ENSMUST00000146637 Sbf1 protein_coding Interval_129884 chr5 122912726 122913425 + 0 NA intron (ENSMUSG00000029475.17, intron 1 of 2) protein_coding-intron (ENSMUSG00000029475.17, intron 12 of 22) -4675 ENSMUSG00000105979.1 ENSMUSG00000105979 ENSMUST00000196235 Gm43411 TEC Interval_4422 chr1 74056526 74056798 + 0 NA intron (ENSMUSG00000055322.16, intron 3 of 32) protein_coding-intron (ENSMUSG00000055322.16, intron 3 of 34) 42014 ENSMUSG00000055322.16 ENSMUSG00000055322 ENSMUST00000190599 Tns1 protein_coding Interval_116626 chr4 116159956 116160148 + 0 NA TTS (ENSMUSG00000028700.14) protein_coding-TTS (ENSMUSG00000028700.14) 4103 ENSMUSG00000028700.14 ENSMUSG00000028700 ENSMUST00000151325 Pomgnt1 protein_coding Interval_80165 chr18 37981609 37981939 + 0 NA intron (ENSMUSG00000024451.9, intron 20 of 32) protein_coding-intron (ENSMUSG00000024451.9, intron 20 of 32) -7157 ENSMUSG00000098608.1 ENSMUSG00000098608 ENSMUST00000184293 Mir6981 miRNA Interval_153901 chr8 10921404 10922320 + 0 NA Intergenic Intergenic 6582 ENSMUSG00000038917.4 ENSMUSG00000038917 ENSMUST00000208615 3930402G23Rik lincRNA Interval_164738 chr9 40904377 40905201 + 0 NA intron (ENSMUSG00000032023.7, intron 6 of 8) protein_coding-intron (ENSMUSG00000032023.7, intron 6 of 8) -7171 ENSMUSG00000032023.7 ENSMUSG00000032023 ENSMUST00000160120 Jhy protein_coding Interval_69602 chr16 94553355 94554247 + 0 NA Intergenic Intergenic -17106 ENSMUSG00000022897.15 ENSMUSG00000022897 ENSMUST00000134383 Dyrk1a protein_coding Interval_31937 chr11 103953236 103954579 + 0 NA intron (ENSMUSG00000034187.18, intron 1 of 8) protein_coding-intron (ENSMUSG00000034187.18, intron 1 of 20) -25682 ENSMUSG00000062421.13 ENSMUSG00000062421 ENSMUST00000154089 Arf2 protein_coding Interval_49844 chr13 117034439 117034606 + 0 NA Intergenic Intergenic -9249 ENSMUSG00000021725.9 ENSMUSG00000021725 ENSMUST00000223833 Parp8 protein_coding Interval_154590 chr8 21756357 21756809 + 0 NA Intergenic Intergenic 7408 ENSMUSG00000084254.1 ENSMUSG00000084254 ENSMUST00000119719 Defa-ps11 unprocessed_pseudogene Interval_41973 chr13 5802622 5804885 + 0 NA Intergenic Intergenic 18105 ENSMUSG00000080562.2 ENSMUSG00000080562 ENSMUST00000116912 Gm26043 miRNA Interval_50515 chr14 14492326 14492643 + 0 NA Intergenic Intergenic -43540 ENSMUSG00000114737.1 ENSMUSG00000114737 ENSMUST00000224271 Gm8483 processed_pseudogene Interval_105374 chr3 85658606 85658815 + 0 NA intron (ENSMUSG00000102805.5, intron 3 of 9) protein_coding-intron (ENSMUSG00000102805.5, intron 3 of 9) 15278 ENSMUSG00000051000.17 ENSMUSG00000051000 ENSMUST00000094148 Fam160a1 protein_coding Interval_35636 chr12 26425045 26425506 + 0 NA Intergenic Intergenic -10265 ENSMUSG00000098771.1 ENSMUSG00000098771 ENSMUST00000183713 Mir6538 miRNA Interval_155820 chr8 39354655 39355348 + 0 NA intron (ENSMUSG00000109827.1, intron 3 of 3) lincRNA-intron (ENSMUSG00000109827.1, intron 3 of 3) -43307 ENSMUSG00000109955.1 ENSMUSG00000109955 ENSMUST00000211458 Gm18644 processed_pseudogene Interval_104896 chr3 78716160 78716495 + 0 NA Intergenic Intergenic -42292 ENSMUSG00000102341.1 ENSMUSG00000102341 ENSMUST00000194471 Gm18952 processed_pseudogene Interval_39585 chr12 91163890 91164132 + 0 NA intron (ENSMUSG00000061533.16, intron 1 of 4) protein_coding-intron (ENSMUSG00000061533.16, intron 1 of 6) 4150 ENSMUSG00000113983.1 ENSMUSG00000113983 ENSMUST00000220984 Gm47742 processed_pseudogene Interval_5479 chr1 89140644 89141422 + 0 NA intron (ENSMUSG00000036206.12, intron 3 of 5) protein_coding-intron (ENSMUSG00000036206.12, intron 3 of 5) 43960 ENSMUSG00000102700.1 ENSMUSG00000102700 ENSMUST00000195426 Gm38312 TEC Interval_124998 chr5 63596736 63597815 + 0 NA Intergenic Intergenic 53619 ENSMUSG00000104868.1 ENSMUSG00000104868 ENSMUST00000067917 Gm9954 TEC Interval_167860 chr9 73121690 73122348 + 0 NA intron (ENSMUSG00000032215.15, intron 5 of 5) protein_coding-intron (ENSMUSG00000032215.15, intron 5 of 5) 8593 ENSMUSG00000032215.15 ENSMUSG00000032215 ENSMUST00000165177 Rsl24d1 protein_coding Interval_35833 chr12 31018476 31019794 + 0 NA exon (ENSMUSG00000112546.1, exon 1 of 1) processed_pseudogene-exon (ENSMUSG00000112546.1, exon 1 of 1) 917 ENSMUSG00000112546.1 ENSMUSG00000112546 ENSMUST00000217973 Gm6992 processed_pseudogene Interval_40535 chr12 105565394 105565810 + 0 NA intron (ENSMUSG00000021070.6, intron 1 of 2) protein_coding-intron (ENSMUSG00000021070.6, intron 1 of 2) 2376 ENSMUSG00000021070.6 ENSMUSG00000021070 ENSMUST00000001652 Bdkrb2 protein_coding Interval_173978 chrX 121232106 121233116 + 0 NA Intergenic Intergenic -54629 ENSMUSG00000080695.1 ENSMUSG00000080695 ENSMUST00000121935 Gm5394 processed_pseudogene Interval_112781 chr4 44958753 44959804 + 0 NA Intergenic Intergenic -8491 ENSMUSG00000086000.1 ENSMUSG00000086000 ENSMUST00000150111 Gm12493 antisense Interval_51488 chr14 28369423 28370075 + 0 NA intron (ENSMUSG00000040640.11, intron 15 of 15) protein_coding-intron (ENSMUSG00000040640.11, intron 15 of 15) -46248 ENSMUSG00000114503.1 ENSMUSG00000114503 ENSMUST00000225453 Gm20242 TEC Interval_86456 chr19 40678360 40679903 + 0 NA intron (ENSMUSG00000048120.16, intron 1 of 3) protein_coding-intron (ENSMUSG00000048120.16, intron 1 of 9) 34985 ENSMUSG00000117952.1 ENSMUSG00000117952 ENSMUST00000235613 Gm50132 sense_intronic Interval_15697 chr10 53654329 53654778 + 0 NA intron (ENSMUSG00000019856.14, intron 4 of 10) protein_coding-intron (ENSMUSG00000019856.14, intron 10 of 17) -6855 ENSMUSG00000019856.14 ENSMUSG00000019856 ENSMUST00000170839 Fam184a protein_coding Interval_30217 chr11 90706616 90707285 + 0 NA Intergenic Intergenic -19362 ENSMUSG00000020541.12 ENSMUSG00000020541 ENSMUST00000131055 Tom1l1 protein_coding Interval_17590 chr10 78031919 78032219 + 0 NA intron (ENSMUSG00000000731.15, intron 10 of 11) protein_coding-intron (ENSMUSG00000000731.15, intron 12 of 13) 11511 ENSMUSG00000000731.15 ENSMUSG00000000731 ENSMUST00000141255 Aire protein_coding Interval_56771 chr14 121960804 121961993 + 0 NA intron (ENSMUSG00000051212.8, intron 1 of 2) protein_coding-intron (ENSMUSG00000041765.6, intron 4 of 8) 3707 ENSMUSG00000051212.8 ENSMUSG00000051212 ENSMUST00000227267 Gpr183 protein_coding Interval_154255 chr8 13836443 13837570 + 0 NA exon (ENSMUSG00000057116.5, exon 1 of 1) protein_coding-exon (ENSMUSG00000057116.5, exon 1 of 1) 1383 ENSMUSG00000057116.5 ENSMUSG00000057116 ENSMUST00000071308 AF366264 protein_coding Interval_166662 chr9 61680586 61681325 + 0 NA Intergenic Intergenic -82129 ENSMUSG00000111739.1 ENSMUSG00000111739 ENSMUST00000213572 Gm47241 processed_pseudogene Interval_49962 chr13 118957793 118958255 + 0 NA Intergenic Intergenic -99610 ENSMUSG00000114868.1 ENSMUSG00000114868 ENSMUST00000224309 Gm47335 processed_pseudogene Interval_122610 chr5 24184037 24184911 + 0 NA TTS (ENSMUSG00000048439.15) protein_coding-TTS (ENSMUSG00000048439.15) 16966 ENSMUSG00000048439.15 ENSMUSG00000048439 ENSMUST00000124150 Nupl2 protein_coding Interval_22617 chr11 12314402 12314873 + 0 NA exon (ENSMUSG00000086584.8, exon 1 of 5) antisense-exon (ENSMUSG00000086584.8, exon 1 of 5) -7638 ENSMUSG00000086584.8 ENSMUSG00000086584 ENSMUST00000174550 Gm12002 antisense Interval_36584 chr12 50969582 50970029 + 0 NA Intergenic Intergenic 35068 ENSMUSG00000112685.1 ENSMUSG00000112685 ENSMUST00000218991 Gm40421 lincRNA Interval_65548 chr16 23240739 23241170 + 0 NA intron (ENSMUSG00000022885.16, intron 1 of 7) protein_coding-intron (ENSMUSG00000022885.16, intron 1 of 7) 14933 ENSMUSG00000022885.16 ENSMUSG00000022885 ENSMUST00000115335 St6gal1 protein_coding Interval_46689 chr13 69220384 69220859 + 0 NA Intergenic Intergenic 79392 ENSMUSG00000097522.1 ENSMUSG00000097522 ENSMUST00000181690 Gm26844 lincRNA Interval_69473 chr16 93774240 93774714 + 0 NA intron (ENSMUSG00000022946.10, intron 20 of 35) protein_coding-intron (ENSMUSG00000022946.10, intron 21 of 36) -18312 ENSMUSG00000022946.10 ENSMUSG00000022946 ENSMUST00000228423 Dop1b protein_coding Interval_129608 chr5 121292099 121292430 + 0 NA intron (ENSMUSG00000042744.16, intron 5 of 13) protein_coding-intron (ENSMUSG00000042744.16, intron 16 of 75) 6034 ENSMUSG00000042744.16 ENSMUSG00000042744 ENSMUST00000130655 Hectd4 protein_coding Interval_123529 chr5 33243708 33244103 + 0 NA Intergenic Intergenic -11413 ENSMUSG00000107161.1 ENSMUSG00000107161 ENSMUST00000202021 Gm43850 processed_pseudogene Interval_58211 chr15 30907656 30908895 + 0 NA intron (ENSMUSG00000022240.10, intron 15 of 21) protein_coding-intron (ENSMUSG00000022240.10, intron 15 of 22) 54603 ENSMUSG00000115012.1 ENSMUSG00000115012 ENSMUST00000228332 9630009A06Rik antisense Interval_60211 chr15 68191919 68192882 + 0 NA intron (ENSMUSG00000022335.17, intron 3 of 15) protein_coding-intron (ENSMUSG00000022335.17, intron 3 of 4) 66387 ENSMUSG00000022335.17 ENSMUSG00000022335 ENSMUST00000161139 Zfat protein_coding Interval_68832 chr16 87454215 87456110 + 0 NA intron (ENSMUSG00000025616.14, intron 1 of 3) protein_coding-intron (ENSMUSG00000025616.14, intron 1 of 17) 113 ENSMUSG00000025616.14 ENSMUSG00000025616 ENSMUST00000177275 Usp16 protein_coding Interval_121533 chr5 3289952 3290628 + 0 NA Intergenic Intergenic 19971 ENSMUSG00000106658.1 ENSMUSG00000106658 ENSMUST00000197473 Gm36548 lincRNA Interval_5539 chr1 89671055 89671639 + 0 NA intron (ENSMUSG00000055013.16, intron 9 of 16) protein_coding-intron (ENSMUSG00000055013.16, intron 9 of 17) 12547 ENSMUSG00000102009.6 ENSMUSG00000102009 ENSMUST00000187011 4933400F21Rik processed_transcript Interval_77471 chr17 89310928 89311188 + 0 NA Intergenic Intergenic -9169 ENSMUSG00000117364.1 ENSMUSG00000117364 ENSMUST00000234989 4933400B14Rik lincRNA Interval_18189 chr10 83533305 83534425 + 0 NA promoter-TSS (ENSMUSG00000020256.14) protein_coding-promoter-TSS (ENSMUSG00000020256.14) -37848 ENSMUSG00000020256.14 ENSMUSG00000020256 ENSMUST00000125193 Aldh1l2 protein_coding Interval_140651 chr6 120313925 120314333 + 0 NA Intergenic Intergenic -19570 ENSMUSG00000041372.10 ENSMUSG00000041372 ENSMUST00000212457 B4galnt3 protein_coding Interval_139008 chr6 94183491 94184472 + 0 NA intron (ENSMUSG00000045095.16, intron 2 of 2) protein_coding-intron (ENSMUSG00000045095.16, intron 1 of 21) 140053 ENSMUSG00000107545.1 ENSMUSG00000107545 ENSMUST00000204466 Gm44307 processed_pseudogene Interval_159154 chr8 91147654 91147908 + 0 NA intron (ENSMUSG00000031667.16, intron 1 of 7) protein_coding-intron (ENSMUSG00000031667.16, intron 2 of 3) -4426 ENSMUSG00000110189.1 ENSMUSG00000110189 ENSMUST00000210399 Gm45665 processed_pseudogene Interval_94450 chr2 91304005 91304935 + 0 NA TTS (ENSMUSG00000040591.18) protein_coding-TTS (ENSMUSG00000040591.18) 39136 ENSMUSG00000027255.14 ENSMUSG00000027255 ENSMUST00000127895 Arfgap2 protein_coding Interval_43807 chr13 36731541 36732226 + 0 NA promoter-TSS (ENSMUSG00000039114.16) protein_coding-promoter-TSS (ENSMUSG00000039114.16) 3248 ENSMUSG00000039114.16 ENSMUSG00000039114 ENSMUST00000224960 Nrn1 protein_coding Interval_42498 chr13 14169643 14171317 + 0 NA promoter-TSS (ENSMUSG00000113775.1) sense_intronic-promoter-TSS (ENSMUSG00000113775.1) -573 ENSMUSG00000113775.1 ENSMUSG00000113775 ENSMUST00000221111 Gm48027 sense_intronic Interval_8729 chr1 150137127 150137480 + 0 NA Intergenic Intergenic -8665 ENSMUSG00000101199.1 ENSMUSG00000101199 ENSMUST00000189312 Gm9687 processed_pseudogene Interval_102823 chr3 31540936 31541834 + 0 NA Intergenic Intergenic 149200 ENSMUSG00000103499.5 ENSMUSG00000103499 ENSMUST00000192046 Gm6558 transcribed_unprocessed_pseudogene Interval_139039 chr6 94492761 94493167 + 0 NA Intergenic Intergenic -7585 ENSMUSG00000045100.11 ENSMUSG00000045100 ENSMUST00000203484 Slc25a26 protein_coding Interval_172298 chrX 12602496 12602807 + 0 NA intron (ENSMUSG00000031007.2, intron 3 of 8) protein_coding-intron (ENSMUSG00000031007.2, intron 3 of 8) 14850 ENSMUSG00000031007.2 ENSMUSG00000031007 ENSMUST00000033313 Atp6ap2 protein_coding Interval_96785 chr2 128240470 128241940 + 0 NA promoter-TSS (ENSMUSG00000074813.14) lincRNA-promoter-TSS (ENSMUSG00000074813.14) 51218 ENSMUSG00000085750.1 ENSMUSG00000085750 ENSMUST00000152439 Gm14009 lincRNA Interval_160413 chr8 109185791 109186496 + 0 NA intron (ENSMUSG00000097393.8, intron 5 of 9) lincRNA-intron (ENSMUSG00000097393.8, intron 3 of 4) 110898 ENSMUSG00000097393.8 ENSMUSG00000097393 ENSMUST00000181098 D030068K23Rik lincRNA Interval_133559 chr6 6825300 6825578 + 0 NA intron (ENSMUSG00000090063.6, intron 2 of 2) antisense-intron (ENSMUSG00000090063.6, intron 2 of 2) 4310 ENSMUSG00000098846.1 ENSMUSG00000098846 ENSMUST00000184005 Gm27905 misc_RNA Interval_28666 chr11 77642783 77643486 + 0 NA Intergenic Intergenic 1776 ENSMUSG00000081543.1 ENSMUSG00000081543 ENSMUST00000119871 Gm12733 processed_pseudogene Interval_10636 chr1 172368737 172369733 + 0 NA exon (ENSMUSG00000044708.5, exon 2 of 2) protein_coding-exon (ENSMUSG00000044708.5, exon 2 of 2) -7311 ENSMUSG00000050229.3 ENSMUSG00000050229 ENSMUST00000052455 Pigm protein_coding Interval_163336 chr9 20933009 20933417 + 0 NA intron (ENSMUSG00000004099.16, intron 9 of 38) protein_coding-intron (ENSMUSG00000004099.16, intron 9 of 38) -19049 ENSMUSG00000099147.1 ENSMUSG00000099147 ENSMUST00000184490 Mir7081 miRNA Interval_74467 chr17 51276012 51276386 + 0 NA Intergenic Intergenic -39137 ENSMUSG00000117168.1 ENSMUSG00000117168 ENSMUST00000233846 Gm49908 processed_pseudogene Interval_75824 chr17 71657053 71657752 + 0 NA intron (ENSMUSG00000041057.10, intron 18 of 18) protein_coding-intron (ENSMUSG00000041057.10, intron 17 of 17) 14706 ENSMUSG00000041057.10 ENSMUSG00000041057 ENSMUST00000234339 Wdr43 protein_coding Interval_63938 chr16 4659401 4659788 + 0 NA TTS (ENSMUSG00000039637.15) protein_coding-TTS (ENSMUSG00000039637.15) 19626 ENSMUSG00000039646.5 ENSMUSG00000039646 ENSMUST00000138044 Vasn protein_coding Interval_80911 chr18 50099747 50100184 + 0 NA intron (ENSMUSG00000062210.13, intron 1 of 3) protein_coding-intron (ENSMUSG00000062210.13, intron 1 of 3) -28529 ENSMUSG00000024507.6 ENSMUSG00000024507 ENSMUST00000127325 Hsd17b4 protein_coding Interval_59382 chr15 51999801 52000364 + 0 NA Intergenic Intergenic -8572 ENSMUSG00000022314.10 ENSMUSG00000022314 ENSMUST00000226529 Rad21 protein_coding Interval_61819 chr15 84393128 84393961 + 0 NA intron (ENSMUSG00000062760.11, intron 4 of 4) protein_coding-intron (ENSMUSG00000062760.11, intron 4 of 4) -46765 ENSMUSG00000116442.1 ENSMUSG00000116442 ENSMUST00000230576 Gm5214 processed_pseudogene Interval_122035 chr5 14370660 14371773 + 0 NA Intergenic Intergenic 128754 ENSMUSG00000106310.1 ENSMUSG00000106310 ENSMUST00000197397 Gm43523 TEC Interval_166022 chr9 55536064 55536317 + 0 NA Intergenic Intergenic -2482 ENSMUSG00000032318.12 ENSMUSG00000032318 ENSMUST00000165302 Isl2 protein_coding Interval_102181 chr3 19245414 19246093 + 0 NA intron (ENSMUSG00000069094.12, intron 3 of 8) protein_coding-intron (ENSMUSG00000069094.12, intron 3 of 12) 17973 ENSMUSG00000087108.1 ENSMUSG00000087108 ENSMUST00000141455 Gm16093 antisense Interval_120945 chr4 151851184 151851835 + 0 NA intron (ENSMUSG00000014592.21, intron 1 of 3) protein_coding-intron (ENSMUSG00000014592.21, intron 1 of 23) 10195 ENSMUSG00000014592.21 ENSMUSG00000014592 ENSMUST00000135780 Camta1 protein_coding Interval_20760 chr10 120812175 120812437 + 0 NA intron (ENSMUSG00000051236.13, intron 1 of 2) protein_coding-intron (ENSMUSG00000051236.13, intron 5 of 6) 11629 ENSMUSG00000086444.2 ENSMUSG00000086444 ENSMUST00000156090 Gm15961 antisense Interval_154307 chr8 14229930 14230158 + 0 NA intron (ENSMUSG00000047495.15, intron 1 of 13) protein_coding-intron (ENSMUSG00000047495.15, intron 1 of 14) 43267 ENSMUSG00000088311.1 ENSMUSG00000088311 ENSMUST00000157686 Gm26184 snoRNA Interval_20923 chr10 122045030 122048243 + 0 NA intron (ENSMUSG00000020121.15, intron 1 of 3) protein_coding-intron (ENSMUSG00000020121.15, intron 1 of 21) 679 ENSMUSG00000020121.15 ENSMUSG00000020121 ENSMUST00000162710 Srgap1 protein_coding Interval_81348 chr18 58675152 58675320 + 0 NA intron (ENSMUSG00000024601.9, intron 3 of 3) protein_coding-intron (ENSMUSG00000024601.9, intron 4 of 4) 15756 ENSMUSG00000024601.9 ENSMUSG00000024601 ENSMUST00000238139 Isoc1 protein_coding Interval_147689 chr7 72011832 72012032 + 0 NA intron (ENSMUSG00000108800.1, intron 2 of 2) lincRNA-intron (ENSMUSG00000108800.1, intron 2 of 2) -49914 ENSMUSG00000108480.1 ENSMUSG00000108480 ENSMUST00000205873 Gm36633 lincRNA Interval_91200 chr2 35870003 35870784 + 0 NA intron (ENSMUSG00000026885.13, intron 6 of 9) protein_coding-intron (ENSMUSG00000026885.13, intron 6 of 9) 26198 ENSMUSG00000106994.1 ENSMUSG00000106994 ENSMUST00000202084 Gm10829 TEC Interval_49094 chr13 107919256 107920342 + 0 NA Intergenic Intergenic -29735 ENSMUSG00000032846.10 ENSMUSG00000032846 ENSMUST00000224719 Zswim6 protein_coding Interval_144828 chr7 28490476 28491160 + 0 NA intron (ENSMUSG00000109336.1, intron 1 of 12) protein_coding-intron (ENSMUSG00000109336.1, intron 1 of 12) -1732 ENSMUSG00000099417.1 ENSMUSG00000099417 ENSMUST00000186274 1700028B04Rik transcribed_processed_pseudogene Interval_28105 chr11 72868898 72869455 + 0 NA intron (ENSMUSG00000055670.14, intron 25 of 54) protein_coding-intron (ENSMUSG00000055670.14, intron 25 of 54) -12616 ENSMUSG00000065298.1 ENSMUSG00000065298 ENSMUST00000083364 Gm26121 snRNA Interval_81132 chr18 54685758 54686049 + 0 NA Intergenic Intergenic 74159 ENSMUSG00000118154.1 ENSMUSG00000118154 ENSMUST00000237954 9330117O12Rik lincRNA Interval_59304 chr15 50997119 50997916 + 0 NA Intergenic Intergenic 99878 ENSMUSG00000115339.1 ENSMUSG00000115339 ENSMUST00000226611 Gm48913 lincRNA Interval_17335 chr10 75940049 75941734 + 0 NA promoter-TSS (ENSMUSG00000050157.6) protein_coding-promoter-TSS (ENSMUSG00000050157.6) -280 ENSMUSG00000050157.6 ENSMUSG00000050157 ENSMUST00000219979 Gm867 protein_coding Interval_93255 chr2 71503094 71504396 + 0 NA intron (ENSMUSG00000041921.16, intron 2 of 8) protein_coding-intron (ENSMUSG00000041921.16, intron 1 of 9) 8474 ENSMUSG00000088066.1 ENSMUSG00000088066 ENSMUST00000157441 Gm23253 snRNA Interval_85243 chr19 24136693 24137412 + 0 NA intron (ENSMUSG00000024812.11, intron 2 of 3) protein_coding-intron (ENSMUSG00000024812.11, intron 2 of 22) 10015 ENSMUSG00000024812.11 ENSMUSG00000024812 ENSMUST00000237550 Tjp2 protein_coding Interval_79131 chr18 24850103 24850938 + 0 NA intron (ENSMUSG00000034295.10, intron 3 of 24) protein_coding-intron (ENSMUSG00000034295.10, intron 3 of 26) 89357 ENSMUSG00000088920.1 ENSMUSG00000088920 ENSMUST00000158295 Gm24294 misc_RNA Interval_122629 chr5 24335678 24336507 + 0 NA intron (ENSMUSG00000086729.1, intron 1 of 1) protein_coding-intron (ENSMUSG00000038319.14, intron 2 of 14) 2169 ENSMUSG00000086729.1 ENSMUSG00000086729 ENSMUST00000144193 Gm15589 antisense Interval_23388 chr11 22126893 22127132 + 0 NA intron (ENSMUSG00000042302.14, intron 6 of 6) protein_coding-intron (ENSMUSG00000042302.14, intron 10 of 23) -125302 ENSMUSG00000005917.15 ENSMUSG00000005917 ENSMUST00000147486 Otx1 protein_coding Interval_46564 chr13 67202949 67203200 + 0 NA intron (ENSMUSG00000051037.15, intron 3 of 3) protein_coding-intron (ENSMUSG00000051037.15, intron 2 of 2) 8568 ENSMUSG00000051037.15 ENSMUSG00000051037 ENSMUST00000117110 Zfp455 protein_coding Interval_20734 chr10 120624147 120624339 + 0 NA Intergenic Intergenic 18706 ENSMUSG00000088924.1 ENSMUSG00000088924 ENSMUST00000158299 Gm24298 snoRNA Interval_150639 chr7 113022468 113023276 + 0 NA Intergenic Intergenic 38969 ENSMUSG00000110207.1 ENSMUSG00000110207 ENSMUST00000210768 Gm33586 lincRNA Interval_88611 chr2 6720601 6721879 + 0 NA TTS (ENSMUSG00000002107.18) protein_coding-TTS (ENSMUSG00000002107.18) 151357 ENSMUSG00000002107.18 ENSMUSG00000002107 ENSMUST00000182037 Celf2 protein_coding Interval_13771 chr10 21935028 21937804 + 0 NA intron (ENSMUSG00000019970.15, intron 1 of 2) protein_coding-intron (ENSMUSG00000019970.15, intron 2 of 13) -42256 ENSMUSG00000019970.15 ENSMUSG00000019970 ENSMUST00000135195 Sgk1 protein_coding Interval_74682 chr17 55931542 55932505 + 0 NA Intergenic Intergenic -16153 ENSMUSG00000059912.4 ENSMUSG00000059912 ENSMUST00000074828 Rpl21-ps6 processed_pseudogene Interval_131750 chr5 139648719 139649068 + 0 NA Intergenic Intergenic -52754 ENSMUSG00000104637.1 ENSMUSG00000104637 ENSMUST00000198319 Gm42424 processed_pseudogene Interval_134260 chr6 23946767 23947134 + 0 NA Intergenic Intergenic 23110 ENSMUSG00000043865.3 ENSMUSG00000043865 ENSMUST00000062463 Tas2r118 protein_coding Interval_149218 chr7 96365553 96365963 + 0 NA intron (ENSMUSG00000048078.16, intron 2 of 2) protein_coding-intron (ENSMUSG00000048078.16, intron 2 of 32) -23794 ENSMUSG00000085751.1 ENSMUSG00000085751 ENSMUST00000137193 Gm15412 antisense Interval_60792 chr15 76799209 76799854 + 0 NA intron (ENSMUSG00000033697.16, intron 1 of 2) protein_coding-intron (ENSMUSG00000033697.16, intron 1 of 11) 1835 ENSMUSG00000090429.3 ENSMUSG00000090429 ENSMUST00000165535 Gm17271 processed_pseudogene Interval_50586 chr14 16087174 16087831 + 0 NA Intergenic Intergenic -50305 ENSMUSG00000114390.1 ENSMUSG00000114390 ENSMUST00000223757 1700062C10Rik lincRNA Interval_162237 chr8 126353399 126353869 + 0 NA intron (ENSMUSG00000057060.8, intron 3 of 7) protein_coding-intron (ENSMUSG00000057060.8, intron 2 of 6) -68894 ENSMUSG00000051671.7 ENSMUSG00000051671 ENSMUST00000211868 Coa6 protein_coding Interval_61163 chr15 79604423 79605944 + 0 NA promoter-TSS (ENSMUSG00000022429.11) protein_coding-promoter-TSS (ENSMUSG00000022429.11) -10390 ENSMUSG00000093223.3 ENSMUSG00000093223 ENSMUST00000175482 Gm27903 miRNA Interval_161721 chr8 122332945 122333592 + 0 NA promoter-TSS (ENSMUSG00000049577.15) protein_coding-promoter-TSS (ENSMUSG00000049577.15) -1363 ENSMUSG00000049577.15 ENSMUSG00000049577 ENSMUST00000212315 Zfpm1 protein_coding Interval_4461 chr1 74343924 74344686 + 0 NA intron (ENSMUSG00000026179.14, intron 1 of 8) protein_coding-intron (ENSMUSG00000026179.14, intron 2 of 9) 11642 ENSMUSG00000026179.14 ENSMUSG00000026179 ENSMUST00000190398 Pnkd protein_coding Interval_20671 chr10 120150471 120150714 + 0 NA intron (ENSMUSG00000020227.10, intron 8 of 11) protein_coding-intron (ENSMUSG00000020227.10, intron 8 of 11) -18057 ENSMUSG00000112894.1 ENSMUSG00000112894 ENSMUST00000220425 Gm47009 antisense Interval_132244 chr5 143567580 143568163 + 0 NA Intergenic Intergenic 19163 ENSMUSG00000083012.9 ENSMUSG00000083012 ENSMUST00000198994 Fam220a protein_coding Interval_51075 chr14 22019325 22021153 + 0 NA intron (ENSMUSG00000063458.13, intron 1 of 6) protein_coding-intron (ENSMUSG00000063458.13, intron 1 of 6) 1831 ENSMUSG00000098542.1 ENSMUSG00000098542 ENSMUST00000183726 Gm27532 miRNA Interval_14415 chr10 33345263 33345495 + 0 NA intron (ENSMUSG00000019787.9, intron 20 of 37) protein_coding-intron (ENSMUSG00000019787.9, intron 20 of 37) -17604 ENSMUSG00000112855.1 ENSMUSG00000112855 ENSMUST00000220106 Gm47842 processed_pseudogene Interval_4481 chr1 74452651 74453464 + 0 NA intron (ENSMUSG00000033364.13, intron 18 of 19) protein_coding-intron (ENSMUSG00000033364.13, intron 18 of 23) 29371 ENSMUSG00000026175.12 ENSMUSG00000026175 ENSMUST00000163018 Vil1 protein_coding Interval_50680 chr14 18166821 18167287 + 0 NA Intergenic Intergenic -21986 ENSMUSG00000114678.1 ENSMUSG00000114678 ENSMUST00000224869 Gm48481 processed_pseudogene Interval_116445 chr4 112248885 112249076 + 0 NA intron (ENSMUSG00000070868.11, intron 2 of 9) protein_coding-intron (ENSMUSG00000070868.11, intron 2 of 7) 16735 ENSMUSG00000070868.11 ENSMUSG00000070868 ENSMUST00000170945 Skint3 protein_coding Interval_105850 chr3 89698905 89699352 + 0 NA Intergenic Intergenic -15894 ENSMUSG00000027951.16 ENSMUSG00000027951 ENSMUST00000131030 Adar protein_coding Interval_131867 chr5 140476271 140476934 + 0 NA intron (ENSMUSG00000106350.2, intron 12 of 19) protein_coding-intron (ENSMUSG00000106350.2, intron 12 of 19) -22711 ENSMUSG00000105056.1 ENSMUSG00000105056 ENSMUST00000196158 Gm42805 processed_pseudogene Interval_86344 chr19 38907654 38908051 + 0 NA exon (ENSMUSG00000048720.8, exon 7 of 13) protein_coding-exon (ENSMUSG00000048720.8, exon 7 of 13) 22610 ENSMUSG00000089545.1 ENSMUSG00000089545 ENSMUST00000158920 Gm25838 misc_RNA Interval_115500 chr4 99517854 99518166 + 0 NA Intergenic Intergenic 2456 ENSMUSG00000080803.1 ENSMUSG00000080803 ENSMUST00000117528 Gm12683 processed_pseudogene Interval_105550 chr3 87616977 87617956 + 0 NA promoter-TSS (ENSMUSG00000041977.18) protein_coding-promoter-TSS (ENSMUSG00000041977.18) 67 ENSMUSG00000093230.1 ENSMUSG00000093230 ENSMUST00000175489 Gm24109 miRNA Interval_22239 chr11 7533327 7535143 + 0 NA Intergenic Intergenic -243861 ENSMUSG00000087637.1 ENSMUSG00000087637 ENSMUST00000149481 Gm11986 lincRNA Interval_160893 chr8 114732037 114732770 + 0 NA intron (ENSMUSG00000004637.15, intron 8 of 8) protein_coding-intron (ENSMUSG00000004637.15, intron 8 of 8) 20236 ENSMUSG00000004637.15 ENSMUSG00000004637 ENSMUST00000162052 Wwox protein_coding Interval_98786 chr2 154935954 154936521 + 0 NA intron (ENSMUSG00000027596.10, intron 1 of 4) protein_coding-intron (ENSMUSG00000027596.10, intron 1 of 4) -43455 ENSMUSG00000074656.12 ENSMUSG00000074656 ENSMUST00000135524 Eif2s2 protein_coding Interval_28341 chr11 75290968 75293039 + 0 NA Intergenic Intergenic 26605 ENSMUSG00000106179.1 ENSMUSG00000106179 ENSMUST00000198372 Gm47300 miRNA Interval_33251 chr11 115475224 115476289 + 0 NA promoter-TSS (ENSMUSG00000057219.11) protein_coding-promoter-TSS (ENSMUSG00000057219.11) -198 ENSMUSG00000057219.11 ENSMUSG00000057219 ENSMUST00000140181 Armc7 protein_coding Interval_17754 chr10 79907932 79909482 + 0 NA promoter-TSS (ENSMUSG00000013833.15) protein_coding-promoter-TSS (ENSMUSG00000013833.15) 216 ENSMUSG00000013833.15 ENSMUSG00000013833 ENSMUST00000170409 Med16 protein_coding Interval_68253 chr16 71273665 71273893 + 0 NA Intergenic Intergenic 23895 ENSMUSG00000116982.1 ENSMUSG00000116982 ENSMUST00000231541 4930567J20Rik lincRNA Interval_38427 chr12 78983663 78984464 + 0 NA promoter-TSS (ENSMUSG00000046157.13) protein_coding-promoter-TSS (ENSMUSG00000046157.13) 23277 ENSMUSG00000046157.13 ENSMUSG00000046157 ENSMUST00000173095 Tmem229b protein_coding Interval_26024 chr11 53534358 53534814 + 0 NA TTS (ENSMUSG00000018398.18) protein_coding-TTS (ENSMUSG00000018398.18) 14659 ENSMUSG00000018398.18 ENSMUSG00000018398 ENSMUST00000145927 Septin8 protein_coding Interval_51731 chr14 31702926 31703433 + 0 NA intron (ENSMUSG00000014496.8, intron 27 of 27) protein_coding-intron (ENSMUSG00000014496.8, intron 27 of 27) 51235 ENSMUSG00000115210.1 ENSMUSG00000115210 ENSMUST00000227034 Gm49308 TEC Interval_122196 chr5 19360107 19360880 + 0 NA intron (ENSMUSG00000040003.18, intron 1 of 2) protein_coding-intron (ENSMUSG00000040003.18, intron 1 of 22) -134325 ENSMUSG00000097626.5 ENSMUSG00000097626 ENSMUST00000197496 4921504A21Rik antisense Interval_114647 chr4 83438446 83439638 + 0 NA intron (ENSMUSG00000028483.13, intron 5 of 11) protein_coding-intron (ENSMUSG00000028483.13, intron 5 of 8) -14912 ENSMUSG00000028483.13 ENSMUSG00000028483 ENSMUST00000130676 Snapc3 protein_coding Interval_97419 chr2 135993286 135994515 + 0 NA intron (ENSMUSG00000039943.16, intron 30 of 36) protein_coding-intron (ENSMUSG00000039943.16, intron 29 of 35) 32351 ENSMUSG00000064444.1 ENSMUSG00000064444 ENSMUST00000082510 Gm26227 snRNA Interval_38002 chr12 73765226 73765489 + 0 NA intron (ENSMUSG00000021108.18, intron 13 of 14) protein_coding-intron (ENSMUSG00000021108.18, intron 12 of 13) -28126 ENSMUSG00000113321.1 ENSMUSG00000113321 ENSMUST00000222997 Gm8075 lincRNA Interval_114888 chr4 86723684 86726587 + 0 NA Intergenic Intergenic -49120 ENSMUSG00000038024.17 ENSMUSG00000038024 ENSMUST00000128710 Dennd4c protein_coding Interval_153830 chr8 9340370 9341712 + 0 NA intron (ENSMUSG00000079157.4, intron 1 of 3) protein_coding-intron (ENSMUSG00000079157.4, intron 1 of 2) 4085 ENSMUSG00000109286.1 ENSMUSG00000109286 ENSMUST00000207837 Gm44541 TEC Interval_42845 chr13 20293660 20293843 + 0 NA intron (ENSMUSG00000041112.17, intron 5 of 6) protein_coding-intron (ENSMUSG00000041112.17, intron 13 of 21) 10834 ENSMUSG00000041112.17 ENSMUSG00000041112 ENSMUST00000180767 Elmo1 protein_coding Interval_62190 chr15 88700752 88701126 + 0 NA promoter-TSS (ENSMUSG00000022387.17) protein_coding-promoter-TSS (ENSMUSG00000022387.17) 18216 ENSMUSG00000022387.17 ENSMUSG00000022387 ENSMUST00000139515 Brd1 protein_coding Interval_135237 chr6 37714232 37715610 + 0 NA Intergenic Intergenic -27726 ENSMUSG00000107035.1 ENSMUSG00000107035 ENSMUST00000201305 Ybx1-ps2 processed_pseudogene Interval_49812 chr13 116302967 116303460 + 0 NA exon (ENSMUSG00000042258.13, exon 4 of 6) protein_coding-exon (ENSMUSG00000042258.13, exon 4 of 6) 6472 ENSMUSG00000042258.13 ENSMUSG00000042258 ENSMUST00000177469 Isl1 protein_coding Interval_67906 chr16 59401030 59401999 + 0 NA Intergenic Intergenic -5818 ENSMUSG00000074991.5 ENSMUSG00000074991 ENSMUST00000114341 Gabrr3 protein_coding Interval_54078 chr14 65058607 65059089 + 0 NA intron (ENSMUSG00000021978.9, intron 5 of 6) protein_coding-intron (ENSMUSG00000021978.9, intron 5 of 6) 39257 ENSMUSG00000021978.9 ENSMUSG00000021978 ENSMUST00000223989 Extl3 protein_coding Interval_151739 chr7 126349945 126351711 + 0 NA exon (ENSMUSG00000108417.1, exon 2 of 2) lincRNA-exon (ENSMUSG00000108417.1, exon 2 of 2) 769 ENSMUSG00000108417.1 ENSMUSG00000108417 ENSMUST00000205858 Gm30928 lincRNA Interval_143992 chr7 18827147 18829059 + 0 NA Intergenic Intergenic -3672 ENSMUSG00000108471.1 ENSMUSG00000108471 ENSMUST00000206689 Gm18855 processed_pseudogene Interval_85837 chr19 32260511 32261595 + 0 NA intron (ENSMUSG00000040451.18, intron 2 of 9) protein_coding-intron (ENSMUSG00000040451.18, intron 3 of 9) 15911 ENSMUSG00000040451.18 ENSMUSG00000040451 ENSMUST00000141252 Sgms1 protein_coding Interval_129826 chr5 122580194 122581128 + 0 NA promoter-TSS (ENSMUSG00000105430.1) antisense-promoter-TSS (ENSMUSG00000105430.1) -808 ENSMUSG00000105430.1 ENSMUSG00000105430 ENSMUST00000198918 Gm43301 antisense Interval_69513 chr16 93974898 93975864 + 0 NA intron (ENSMUSG00000047109.13, intron 1 of 2) protein_coding-intron (ENSMUSG00000047109.13, intron 1 of 2) 7207 ENSMUSG00000116681.1 ENSMUSG00000116681 ENSMUST00000232110 Gm49618 sense_intronic Interval_88231 chr19 60860853 60861976 + 0 NA promoter-TSS (ENSMUSG00000063698.9) protein_coding-promoter-TSS (ENSMUSG00000063698.9) 65 ENSMUSG00000063698.9 ENSMUSG00000063698 ENSMUST00000124921 Sfxn4 protein_coding Interval_81037 chr18 53223634 53225108 + 0 NA Intergenic Intergenic -2485 ENSMUSG00000118240.1 ENSMUSG00000118240 ENSMUST00000235759 Gm1859 processed_pseudogene Interval_63170 chr15 99531087 99531502 + 0 NA Intergenic Intergenic -20617 ENSMUSG00000023011.8 ENSMUSG00000023011 ENSMUST00000230603 Faim2 protein_coding Interval_73298 chr17 36035611 36035897 + 0 NA intron (ENSMUSG00000092368.1, intron 1 of 1) antisense-intron (ENSMUSG00000092368.1, intron 1 of 1) -3064 ENSMUSG00000067212.8 ENSMUSG00000067212 ENSMUST00000174471 H2-T23 protein_coding Interval_27725 chr11 69689609 69690439 + 0 NA intron (ENSMUSG00000085890.7, intron 2 of 2) protein_coding-intron (ENSMUSG00000018752.19, intron 5 of 10) -4240 ENSMUSG00000089669.7 ENSMUSG00000089669 ENSMUST00000108648 Tnfsf13 protein_coding Interval_159778 chr8 102841825 102842016 + 0 NA Intergenic Intergenic 23878 ENSMUSG00000063696.7 ENSMUSG00000063696 ENSMUST00000076373 Gm8730 processed_pseudogene Interval_77236 chr17 87513738 87514916 + 0 NA Intergenic Intergenic 16417 ENSMUSG00000117361.1 ENSMUSG00000117361 ENSMUST00000234692 Gm30984 lincRNA Interval_38967 chr12 84174798 84176700 + 0 NA intron (ENSMUSG00000042507.15, intron 1 of 12) protein_coding-intron (ENSMUSG00000042507.15, intron 1 of 12) 12057 ENSMUSG00000113776.1 ENSMUSG00000113776 ENSMUST00000220651 Gm19327 TEC Interval_31456 chr11 100790382 100790756 + 0 NA intron (ENSMUSG00000020919.11, intron 13 of 18) protein_coding-intron (ENSMUSG00000020919.11, intron 13 of 18) -15769 ENSMUSG00000089049.1 ENSMUSG00000089049 ENSMUST00000158424 Gm24358 misc_RNA Interval_170951 chr9 113174511 113174803 + 0 NA TTS (ENSMUSG00000111235.1) lincRNA-TTS (ENSMUSG00000111235.1) 15158 ENSMUSG00000111235.1 ENSMUSG00000111235 ENSMUST00000213839 Gm4657 lincRNA Interval_32644 chr11 109374294 109375013 + 0 NA intron (ENSMUSG00000020611.14, intron 2 of 3) protein_coding-intron (ENSMUSG00000020611.14, intron 2 of 3) -11410 ENSMUSG00000056687.9 ENSMUSG00000056687 ENSMUST00000190563 Gm11696 antisense Interval_104570 chr3 68363997 68364316 + 0 NA intron (ENSMUSG00000027777.15, intron 1 of 6) protein_coding-intron (ENSMUSG00000027777.15, intron 1 of 7) 30960 ENSMUSG00000102846.1 ENSMUSG00000102846 ENSMUST00000193165 Gm10292 processed_pseudogene Interval_47700 chr13 91410340 91410672 + 0 NA Intergenic Intergenic -22421 ENSMUSG00000097182.2 ENSMUSG00000097182 ENSMUST00000181054 A830009L08Rik lincRNA Interval_49193 chr13 109318011 109318576 + 0 NA intron (ENSMUSG00000021699.17, intron 1 of 14) protein_coding-intron (ENSMUSG00000021699.17, intron 1 of 14) -6451 ENSMUSG00000076946.2 ENSMUSG00000076946 ENSMUST00000103758 Mir582 miRNA Interval_129250 chr5 118434720 118437456 + 0 NA Intergenic Intergenic -17270 ENSMUSG00000093041.1 ENSMUSG00000093041 ENSMUST00000175300 Gm26455 miRNA Interval_2041 chr1 36064904 36065402 + 0 NA Intergenic Intergenic -34135 ENSMUSG00000102434.1 ENSMUSG00000102434 ENSMUST00000195698 Gm38049 TEC Interval_172782 chrX 48683671 48684007 + 0 NA Intergenic Intergenic -9361 ENSMUSG00000051209.3 ENSMUSG00000051209 ENSMUST00000053970 Gpr119 protein_coding Interval_64374 chr16 10921213 10921454 + 0 NA intron (ENSMUSG00000117309.1, intron 9 of 45) processed_transcript-intron (ENSMUSG00000095369.2, intron 3 of 5) 15973 ENSMUSG00000095369.2 ENSMUSG00000095369 ENSMUST00000233047 Gm21859 processed_transcript Interval_105578 chr3 87863477 87866592 + 0 NA intron (ENSMUSG00000004895.9, intron 4 of 6) protein_coding-intron (ENSMUSG00000004895.9, intron 4 of 6) 18023 ENSMUSG00000028071.12 ENSMUSG00000028071 ENSMUST00000194639 Sh2d2a protein_coding Interval_129226 chr5 118319006 118319394 + 0 NA Intergenic Intergenic 52751 ENSMUSG00000095477.1 ENSMUSG00000095477 ENSMUST00000104098 Gm25076 snoRNA Interval_124320 chr5 43893709 43894803 + 0 NA intron (ENSMUSG00000029084.5, intron 1 of 7) protein_coding-intron (ENSMUSG00000029084.5, intron 1 of 7) 15629 ENSMUSG00000087281.1 ENSMUSG00000087281 ENSMUST00000154897 Gm16015 antisense Interval_142042 chr6 136702445 136702635 + 0 NA intron (ENSMUSG00000042638.14, intron 24 of 25) protein_coding-intron (ENSMUSG00000042638.14, intron 25 of 26) -7257 ENSMUSG00000107850.1 ENSMUSG00000107850 ENSMUST00000203395 Gm4714 processed_pseudogene Interval_18488 chr10 86658361 86658587 + 0 NA exon (ENSMUSG00000112666.1, exon 2 of 10) lincRNA-exon (ENSMUSG00000112666.1, exon 2 of 10) 1069 ENSMUSG00000112666.1 ENSMUSG00000112666 ENSMUST00000219608 Gm48485 lincRNA Interval_103484 chr3 44099165 44099991 + 0 NA Intergenic Intergenic 143857 ENSMUSG00000103148.1 ENSMUSG00000103148 ENSMUST00000193249 Gm37746 TEC Interval_126420 chr5 88384601 88385008 + 0 NA intron (ENSMUSG00000029282.3, intron 7 of 8) protein_coding-intron (ENSMUSG00000029282.3, intron 7 of 8) 8696 ENSMUSG00000029282.3 ENSMUSG00000029282 ENSMUST00000073363 Amtn protein_coding Interval_150190 chr7 107749173 107750293 + 0 NA TTS (ENSMUSG00000048065.8) protein_coding-TTS (ENSMUSG00000048065.8) 8263 ENSMUSG00000048065.8 ENSMUSG00000048065 ENSMUST00000208217 Cyb5r2 protein_coding Interval_15561 chr10 51508385 51508963 + 0 NA intron (ENSMUSG00000112766.1, intron 2 of 3) antisense-intron (ENSMUSG00000112766.1, intron 2 of 3) -3200 ENSMUSG00000112031.1 ENSMUSG00000112031 ENSMUST00000218214 Gm48484 processed_pseudogene Interval_84578 chr19 12959590 12960118 + 0 NA Intergenic Intergenic 9596 ENSMUSG00000062892.4 ENSMUSG00000062892 ENSMUST00000082006 Olfr1450 protein_coding Interval_110520 chr4 3523574 3524734 + 0 NA Intergenic Intergenic -7639 ENSMUSG00000081660.1 ENSMUSG00000081660 ENSMUST00000121996 Gm11787 unprocessed_pseudogene Interval_8843 chr1 151485492 151485697 + 0 NA intron (ENSMUSG00000026484.13, intron 1 of 3) protein_coding-intron (ENSMUSG00000026484.13, intron 1 of 6) -9432 ENSMUSG00000026484.13 ENSMUSG00000026484 ENSMUST00000187991 Rnf2 protein_coding Interval_87586 chr19 53584747 53584932 + 0 NA Intergenic Intergenic 4229 ENSMUSG00000071497.4 ENSMUSG00000071497 ENSMUST00000095978 Nutf2-ps1 protein_coding Interval_82332 chr18 70862388 70862645 + 0 NA Intergenic Intergenic 45135 ENSMUSG00000118271.1 ENSMUSG00000118271 ENSMUST00000236972 Gm50262 processed_pseudogene Interval_162598 chr9 5635121 5635739 + 0 NA Intergenic Intergenic -161349 ENSMUSG00000110927.1 ENSMUSG00000110927 ENSMUST00000213873 Gm48506 processed_pseudogene Interval_99870 chr2 165401055 165401312 + 0 NA promoter-TSS (ENSMUSG00000027670.4) protein_coding-promoter-TSS (ENSMUSG00000027670.4) -778 ENSMUSG00000027670.4 ENSMUSG00000027670 ENSMUST00000029213 Ocstamp protein_coding Interval_124170 chr5 38837601 38838251 + 0 NA intron (ENSMUSG00000039315.15, intron 2 of 18) protein_coding-intron (ENSMUSG00000039315.15, intron 2 of 18) 38886 ENSMUSG00000039315.15 ENSMUSG00000039315 ENSMUST00000171633 Clnk protein_coding Interval_148278 chr7 80246140 80246946 + 0 NA promoter-TSS (ENSMUSG00000045467.13) protein_coding-promoter-TSS (ENSMUSG00000045467.13) 118 ENSMUSG00000045467.13 ENSMUSG00000045467 ENSMUST00000205270 Ttll13 protein_coding Interval_92060 chr2 52931440 52931875 + 0 NA intron (ENSMUSG00000036053.17, intron 1 of 26) protein_coding-intron (ENSMUSG00000036053.17, intron 1 of 26) 73797 ENSMUSG00000036053.17 ENSMUSG00000036053 ENSMUST00000050719 Fmnl2 protein_coding Interval_78564 chr18 14750789 14752272 + 0 NA intron (ENSMUSG00000036743.4, intron 4 of 5) protein_coding-intron (ENSMUSG00000036743.4, intron 4 of 6) 24984 ENSMUSG00000036743.4 ENSMUSG00000036743 ENSMUST00000235037 Psma8 protein_coding Interval_157198 chr8 67522986 67524095 + 0 NA promoter-TSS (ENSMUSG00000056426.3) protein_coding-promoter-TSS (ENSMUSG00000056426.3) -314 ENSMUSG00000056426.3 ENSMUSG00000056426 ENSMUST00000070514 Nat3 protein_coding Interval_108068 chr3 121323224 121324379 + 0 NA intron (ENSMUSG00000039887.11, intron 2 of 2) protein_coding-intron (ENSMUSG00000039887.11, intron 3 of 3) -13891 ENSMUSG00000084674.1 ENSMUSG00000084674 ENSMUST00000122725 Gm26027 misc_RNA Interval_5615 chr1 90247416 90248282 + 0 NA Intergenic Intergenic 12271 ENSMUSG00000101951.1 ENSMUSG00000101951 ENSMUST00000187649 Gm28721 lincRNA Interval_60725 chr15 76380001 76381208 + 0 NA promoter-TSS (ENSMUSG00000022558.16) protein_coding-promoter-TSS (ENSMUSG00000022558.16) 51 ENSMUSG00000022558.16 ENSMUSG00000022558 ENSMUST00000161350 Mroh1 protein_coding Interval_145889 chr7 41451508 41452620 + 0 NA intron (ENSMUSG00000092592.1, intron 2 of 7) protein_coding-intron (ENSMUSG00000092592.1, intron 2 of 7) -3368 ENSMUSG00000066537.5 ENSMUSG00000066537 ENSMUST00000165029 Vmn2r57 protein_coding Interval_6082 chr1 96482439 96483446 + 0 NA Intergenic Intergenic 73761 ENSMUSG00000100336.1 ENSMUSG00000100336 ENSMUST00000187961 Gm29601 lincRNA Interval_167333 chr9 67495694 67495922 + 0 NA intron (ENSMUSG00000052698.15, intron 1 of 57) protein_coding-intron (ENSMUSG00000052698.15, intron 1 of 57) 71305 ENSMUSG00000111412.1 ENSMUSG00000111412 ENSMUST00000216972 Gm47047 antisense Interval_107668 chr3 109872174 109872633 + 0 NA intron (ENSMUSG00000059857.15, intron 2 of 4) protein_coding-intron (ENSMUSG00000059857.15, intron 2 of 6) 8623 ENSMUSG00000065872.1 ENSMUSG00000065872 ENSMUST00000083938 Gm25681 snRNA Interval_32953 chr11 113343818 113344224 + 0 NA intron (ENSMUSG00000041654.15, intron 6 of 9) protein_coding-intron (ENSMUSG00000041654.15, intron 7 of 10) -123956 ENSMUSG00000078251.2 ENSMUSG00000078251 ENSMUST00000105048 Gm16487 pseudogene Interval_98054 chr2 147263726 147264949 + 0 NA intron (ENSMUSG00000086509.2, intron 1 of 5) antisense-intron (ENSMUSG00000086509.2, intron 1 of 5) -13552 ENSMUSG00000089316.1 ENSMUSG00000089316 ENSMUST00000158691 Gm22261 misc_RNA Interval_16262 chr10 61792829 61793537 + 0 NA Intergenic Intergenic -9036 ENSMUSG00000020086.6 ENSMUSG00000020086 ENSMUST00000020283 Macroh2a2 protein_coding Interval_6933 chr1 120978374 120978662 + 0 NA Intergenic Intergenic -108953 ENSMUSG00000097881.7 ENSMUSG00000097881 ENSMUST00000181183 Celrr lincRNA Interval_22406 chr11 9701934 9702297 + 0 NA Intergenic Intergenic 3508 ENSMUSG00000104137.1 ENSMUSG00000104137 ENSMUST00000195362 Gm36954 TEC Interval_115590 chr4 101168275 101168677 + 0 NA intron (ENSMUSG00000028530.14, intron 11 of 24) protein_coding-intron (ENSMUSG00000028530.14, intron 11 of 24) -18288 ENSMUSG00000077677.1 ENSMUSG00000077677 ENSMUST00000104489 Gm24468 snRNA Interval_16582 chr10 64401473 64401733 + 0 NA intron (ENSMUSG00000060843.11, intron 9 of 17) protein_coding-intron (ENSMUSG00000060843.11, intron 8 of 16) -96859 ENSMUSG00000089003.1 ENSMUSG00000089003 ENSMUST00000158378 Gm23854 snRNA Interval_155537 chr8 34164617 34165822 + 0 NA TTS (ENSMUSG00000031532.7) protein_coding-TTS (ENSMUSG00000031532.7) 1493 ENSMUSG00000098785.1 ENSMUSG00000098785 ENSMUST00000183885 Mir6395 miRNA Interval_22917 chr11 17358513 17359938 + 0 NA Intergenic Intergenic -60806 ENSMUSG00000082797.3 ENSMUSG00000082797 ENSMUST00000117065 Gm12015 processed_pseudogene Interval_152155 chr7 130227323 130227643 + 0 NA intron (ENSMUSG00000030849.18, intron 1 of 4) protein_coding-intron (ENSMUSG00000030849.18, intron 2 of 14) 38772 ENSMUSG00000030849.18 ENSMUSG00000030849 ENSMUST00000208844 Fgfr2 protein_coding Interval_170748 chr9 110509860 110510653 + 0 NA intron (ENSMUSG00000032489.17, intron 14 of 17) protein_coding-intron (ENSMUSG00000032489.17, intron 13 of 20) -32955 ENSMUSG00000104983.1 ENSMUSG00000104983 ENSMUST00000199595 Gm42763 TEC Interval_82855 chr18 77504963 77506180 + 0 NA promoter-TSS (ENSMUSG00000025427.15) protein_coding-promoter-TSS (ENSMUSG00000025427.15) -7869 ENSMUSG00000117855.1 ENSMUSG00000117855 ENSMUST00000236419 Gm50197 processed_pseudogene Interval_3293 chr1 55792708 55792994 + 0 NA Intergenic Intergenic 90826 ENSMUSG00000038349.10 ENSMUSG00000038349 ENSMUST00000187059 Plcl1 protein_coding Interval_41561 chr12 116299191 116299904 + 0 NA intron (ENSMUSG00000021171.8, intron 1 of 22) protein_coding-intron (ENSMUSG00000021171.8, intron 1 of 21) -19316 ENSMUSG00000113527.1 ENSMUSG00000113527 ENSMUST00000222938 Gm48079 lincRNA Interval_20400 chr10 117356154 117356595 + 0 NA promoter-TSS (ENSMUSG00000055531.12) protein_coding-promoter-TSS (ENSMUSG00000055531.12) 20554 ENSMUSG00000055531.12 ENSMUSG00000055531 ENSMUST00000175924 Cpsf6 protein_coding Interval_102157 chr3 18828512 18829650 + 0 NA Intergenic Intergenic 76004 ENSMUSG00000103264.1 ENSMUSG00000103264 ENSMUST00000194363 Gm30341 processed_pseudogene Interval_137792 chr6 82539346 82539537 + 0 NA intron (ENSMUSG00000030043.11, intron 2 of 4) protein_coding-intron (ENSMUSG00000030043.11, intron 3 of 5) 137107 ENSMUSG00000030043.11 ENSMUSG00000030043 ENSMUST00000203775 Tacr1 protein_coding Interval_13321 chr10 14833181 14834215 + 0 NA Intergenic Intergenic 61758 ENSMUSG00000112113.1 ENSMUSG00000112113 ENSMUST00000220206 Gm47698 lincRNA Interval_99566 chr2 163271573 163271811 + 0 NA intron (ENSMUSG00000074607.11, intron 2 of 8) protein_coding-intron (ENSMUSG00000074607.11, intron 2 of 8) 46238 ENSMUSG00000074607.11 ENSMUSG00000074607 ENSMUST00000148599 Tox2 protein_coding Interval_136189 chr6 51880805 51881690 + 0 NA intron (ENSMUSG00000059182.7, intron 2 of 4) protein_coding-intron (ENSMUSG00000059182.7, intron 9 of 12) -9318 ENSMUSG00000059182.7 ENSMUSG00000059182 ENSMUST00000203313 Skap2 protein_coding Interval_17625 chr10 78297714 78298414 + 0 NA promoter-TSS (ENSMUSG00000112442.1) TEC-promoter-TSS (ENSMUSG00000112442.1) -251 ENSMUSG00000112442.1 ENSMUSG00000112442 ENSMUST00000219008 Gm47992 TEC Interval_107878 chr3 116518090 116518269 + 0 NA intron (ENSMUSG00000000340.10, intron 1 of 3) protein_coding-intron (ENSMUSG00000000340.10, intron 1 of 10) 5051 ENSMUSG00000000340.10 ENSMUSG00000000340 ENSMUST00000196376 Dbt protein_coding Interval_109829 chr3 148663093 148663334 + 0 NA Intergenic Intergenic 10153 ENSMUSG00000105934.1 ENSMUSG00000105934 ENSMUST00000196420 Gm43575 processed_pseudogene Interval_73834 chr17 44267266 44268979 + 0 NA intron (ENSMUSG00000023959.10, intron 4 of 5) protein_coding-intron (ENSMUSG00000023959.10, intron 4 of 5) 99781 ENSMUSG00000117106.1 ENSMUSG00000117106 ENSMUST00000233110 Gm49872 lincRNA Interval_10603 chr1 172156538 172156785 + 0 NA intron (ENSMUSG00000026554.15, intron 2 of 9) protein_coding-intron (ENSMUSG00000026554.15, intron 1 of 12) 8572 ENSMUSG00000026554.15 ENSMUSG00000026554 ENSMUST00000191891 Dcaf8 protein_coding Interval_39740 chr12 96139579 96139831 + 0 NA Intergenic Intergenic 89658 ENSMUSG00000112024.1 ENSMUSG00000112024 ENSMUST00000219586 Gm47394 unprocessed_pseudogene Interval_126749 chr5 92504330 92506674 + 0 NA exon (ENSMUSG00000029426.8, exon 1 of 12) protein_coding-exon (ENSMUSG00000029426.8, exon 1 of 12) 1331 ENSMUSG00000029426.8 ENSMUSG00000029426 ENSMUST00000201253 Scarb2 protein_coding Interval_72028 chr17 27634549 27636889 + 0 NA promoter-TSS (ENSMUSG00000052146.16) protein_coding-promoter-TSS (ENSMUSG00000052146.16) 376 ENSMUSG00000087387.2 ENSMUSG00000087387 ENSMUST00000133274 Gm15420 antisense Interval_159171 chr8 91352709 91353704 + 0 NA intron (ENSMUSG00000055932.15, intron 1 of 6) protein_coding-intron (ENSMUSG00000055932.15, intron 1 of 8) 38739 ENSMUSG00000110233.1 ENSMUSG00000110233 ENSMUST00000209572 Gm45427 TEC Interval_118938 chr4 134557408 134558347 + 0 NA Intergenic Intergenic 9974 ENSMUSG00000099289.1 ENSMUSG00000099289 ENSMUST00000185007 Mir6403 miRNA Interval_68661 chr16 84003686 84004005 + 0 NA Intergenic Intergenic 53539 ENSMUSG00000116745.1 ENSMUSG00000116745 ENSMUST00000231610 Gm41481 lincRNA Interval_105417 chr3 86107384 86108917 + 0 NA intron (ENSMUSG00000028082.14, intron 5 of 12) protein_coding-intron (ENSMUSG00000028082.14, intron 7 of 14) 7616 ENSMUSG00000065847.1 ENSMUSG00000065847 ENSMUST00000083913 Gm25188 snoRNA Interval_103589 chr3 50678437 50678778 + 0 NA Intergenic Intergenic 4794 ENSMUSG00000104281.1 ENSMUSG00000104281 ENSMUST00000193929 Gm37461 TEC Interval_3319 chr1 56843876 56845166 + 0 NA intron (ENSMUSG00000038331.15, intron 5 of 6) protein_coding-intron (ENSMUSG00000038331.15, intron 8 of 9) 125351 ENSMUSG00000038331.15 ENSMUSG00000038331 ENSMUST00000177282 Satb2 protein_coding Interval_19746 chr10 108435789 108436141 + 0 NA promoter-TSS (ENSMUSG00000112532.1) lincRNA-promoter-TSS (ENSMUSG00000112532.1) 7898 ENSMUSG00000093762.1 ENSMUSG00000093762 ENSMUST00000177317 Gm25591 miRNA Interval_47507 chr13 85935108 85935991 + 0 NA Intergenic Intergenic 43807 ENSMUSG00000114900.1 ENSMUSG00000114900 ENSMUST00000224403 Gm46396 processed_pseudogene Interval_102021 chr3 15129288 15129779 + 0 NA Intergenic Intergenic 41909 ENSMUSG00000103912.1 ENSMUSG00000103912 ENSMUST00000194008 Gm33819 lincRNA Interval_152581 chr7 134778293 134778598 + 0 NA TTS (ENSMUSG00000058325.6) protein_coding-TTS (ENSMUSG00000058325.6) 107758 ENSMUSG00000058325.6 ENSMUSG00000058325 ENSMUST00000210121 Dock1 protein_coding Interval_6677 chr1 118686703 118687893 + 0 NA Intergenic Intergenic 5477 ENSMUSG00000088363.1 ENSMUSG00000088363 ENSMUST00000157738 Gm23497 snRNA Interval_129825 chr5 122566566 122566784 + 0 NA TTS (ENSMUSG00000105815.1) TEC-TTS (ENSMUSG00000105815.1) 1429 ENSMUSG00000105815.1 ENSMUSG00000105815 ENSMUST00000197208 Gm43541 TEC Interval_104149 chr3 59104815 59105025 + 0 NA intron (ENSMUSG00000056476.13, intron 15 of 43) protein_coding-intron (ENSMUSG00000056476.13, intron 14 of 42) -3099 ENSMUSG00000050075.8 ENSMUSG00000050075 ENSMUST00000085040 Gpr171 protein_coding Interval_140335 chr6 116667531 116667732 + 0 NA intron (ENSMUSG00000042129.8, intron 1 of 4) protein_coding-intron (ENSMUSG00000042129.8, intron 1 of 10) 6167 ENSMUSG00000042129.8 ENSMUSG00000042129 ENSMUST00000204576 Rassf4 protein_coding Interval_99197 chr2 157957478 157958399 + 0 NA Intergenic Intergenic 43285 ENSMUSG00000037843.6 ENSMUSG00000037843 ENSMUST00000109523 Vstm2l protein_coding Interval_68851 chr16 87590451 87591201 + 0 NA intron (ENSMUSG00000025610.7, intron 4 of 4) protein_coding-intron (ENSMUSG00000025610.7, intron 4 of 4) 30294 ENSMUSG00000064670.1 ENSMUSG00000064670 ENSMUST00000082736 Gm22808 snRNA Interval_125907 chr5 75607451 75608439 + 0 NA intron (ENSMUSG00000005672.12, intron 2 of 20) protein_coding-intron (ENSMUSG00000005672.12, intron 2 of 20) -41149 ENSMUSG00000005672.12 ENSMUSG00000005672 ENSMUST00000201240 Kit protein_coding Interval_52600 chr14 47808612 47809262 + 0 NA intron (ENSMUSG00000115310.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000115310.1, intron 1 of 3) -3618 ENSMUSG00000115215.1 ENSMUSG00000115215 ENSMUST00000226360 Gm41148 lincRNA Interval_163608 chr9 22506262 22506869 + 0 NA intron (ENSMUSG00000035919.16, intron 5 of 22) protein_coding-intron (ENSMUSG00000035919.16, intron 4 of 21) -5892 ENSMUSG00000035919.16 ENSMUSG00000035919 ENSMUST00000124076 Bbs9 protein_coding Interval_162389 chr8 127774701 127776031 + 0 NA Intergenic Intergenic 177660 ENSMUSG00000088580.1 ENSMUSG00000088580 ENSMUST00000157955 Gm22968 rRNA Interval_6505 chr1 113247046 113247917 + 0 NA Intergenic Intergenic -41859 ENSMUSG00000101453.1 ENSMUSG00000101453 ENSMUST00000190085 Gm28189 lincRNA Interval_75159 chr17 64132149 64133332 + 0 NA intron (ENSMUSG00000000127.15, intron 15 of 17) protein_coding-intron (ENSMUSG00000000127.15, intron 15 of 17) 188875 ENSMUSG00000080455.1 ENSMUSG00000080455 ENSMUST00000116805 Gm24194 miRNA Interval_14693 chr10 39096527 39096756 + 0 NA intron (ENSMUSG00000019846.11, intron 32 of 37) protein_coding-intron (ENSMUSG00000019846.11, intron 32 of 37) -9140 ENSMUSG00000019846.11 ENSMUSG00000019846 ENSMUST00000163036 Lama4 protein_coding Interval_3218 chr1 54966443 54967130 + 0 NA Intergenic Intergenic -50192 ENSMUSG00000102642.1 ENSMUSG00000102642 ENSMUST00000193052 A130048G24Rik TEC Interval_140714 chr6 120792746 120793608 + 0 NA intron (ENSMUSG00000004902.7, intron 9 of 9) protein_coding-intron (ENSMUSG00000004902.7, intron 9 of 9) 4493 ENSMUSG00000093409.1 ENSMUSG00000093409 ENSMUST00000176615 Gm25193 miRNA Interval_150966 chr7 116929099 116929305 + 0 NA Intergenic Intergenic 23493 ENSMUSG00000064971.1 ENSMUSG00000064971 ENSMUST00000083037 Gm26054 snRNA Interval_50450 chr14 13459248 13459510 + 0 NA intron (ENSMUSG00000056296.17, intron 1 of 3) protein_coding-intron (ENSMUSG00000056296.17, intron 2 of 5) -105299 ENSMUSG00000081115.2 ENSMUSG00000081115 ENSMUST00000118492 Gm15913 processed_pseudogene Interval_14453 chr10 33960996 33961759 + 0 NA Intergenic Intergenic -8606 ENSMUSG00000111993.1 ENSMUSG00000111993 ENSMUST00000219391 Gm48018 transcribed_unprocessed_pseudogene Interval_118495 chr4 132074474 132075907 + 0 NA promoter-TSS (ENSMUSG00000028906.17) protein_coding-promoter-TSS (ENSMUSG00000028906.17) 493 ENSMUSG00000070717.1 ENSMUSG00000070717 ENSMUST00000094662 Gm10300 antisense Interval_5179 chr1 86283839 86285268 + 0 NA intron (ENSMUSG00000087538.1, intron 2 of 3) antisense-intron (ENSMUSG00000087538.1, intron 2 of 3) 16822 ENSMUSG00000087538.1 ENSMUSG00000087538 ENSMUST00000126385 Gm16341 antisense Interval_56881 chr14 122786028 122786223 + 0 NA intron (ENSMUSG00000041650.15, intron 2 of 3) protein_coding-intron (ENSMUSG00000041650.15, intron 19 of 23) 99809 ENSMUSG00000115264.1 ENSMUSG00000115264 ENSMUST00000226674 Gm49260 TEC Interval_151929 chr7 127602736 127604871 + 0 NA TTS (ENSMUSG00000030816.8) protein_coding-TTS (ENSMUSG00000030816.8) 642 ENSMUSG00000099579.1 ENSMUSG00000099579 ENSMUST00000191038 1700120K04Rik antisense Interval_114728 chr4 84499992 84501234 + 0 NA intron (ENSMUSG00000028487.18, intron 2 of 5) protein_coding-intron (ENSMUSG00000028487.18, intron 4 of 7) -71489 ENSMUSG00000083743.1 ENSMUSG00000083743 ENSMUST00000119071 Gm12421 processed_pseudogene Interval_116437 chr4 112013537 112014036 + 0 NA intron (ENSMUSG00000089773.7, intron 2 of 2) protein_coding-intron (ENSMUSG00000089773.7, intron 2 of 4) 7517 ENSMUSG00000089773.7 ENSMUSG00000089773 ENSMUST00000143802 Skint1 protein_coding Interval_62351 chr15 90898215 90898488 + 0 NA promoter-TSS (ENSMUSG00000116210.1) transcribed_processed_pseudogene-promoter-TSS (ENSMUSG00000116210.1) 77 ENSMUSG00000116210.1 ENSMUSG00000116210 ENSMUST00000229463 Spn-ps transcribed_processed_pseudogene Interval_51804 chr14 32317686 32318513 + 0 NA promoter-TSS (ENSMUSG00000115691.1) lincRNA-promoter-TSS (ENSMUSG00000115691.1) -114 ENSMUSG00000115691.1 ENSMUSG00000115691 ENSMUST00000226980 Gm48914 lincRNA Interval_60550 chr15 74879511 74880344 + 0 NA exon (ENSMUSG00000063522.5, exon 3 of 3) protein_coding-exon (ENSMUSG00000063522.5, exon 3 of 3) 17094 ENSMUSG00000063522.5 ENSMUSG00000063522 ENSMUST00000077004 Ly6m protein_coding Interval_48366 chr13 98534296 98534610 + 0 NA Intergenic Intergenic -16515 ENSMUSG00000104430.1 ENSMUSG00000104430 ENSMUST00000193184 Gm37425 TEC Interval_34371 chr12 3664253 3665278 + 0 NA intron (ENSMUSG00000071454.13, intron 8 of 8) protein_coding-intron (ENSMUSG00000071454.13, intron 8 of 18) -34413 ENSMUSG00000077830.1 ENSMUSG00000077830 ENSMUST00000104640 Gm26050 miRNA Interval_24065 chr11 29903102 29903419 + 0 NA intron (ENSMUSG00000044072.14, intron 3 of 41) protein_coding-intron (ENSMUSG00000044072.14, intron 3 of 41) 53799 ENSMUSG00000088135.1 ENSMUSG00000088135 ENSMUST00000157510 Gm22588 snoRNA Interval_173898 chrX 107897807 107898406 + 0 NA Intergenic Intergenic 50359 ENSMUSG00000073006.2 ENSMUSG00000073006 ENSMUST00000155294 Gm732 protein_coding Interval_71549 chr17 24501986 24502715 + 0 NA exon (ENSMUSG00000033597.9, exon 16 of 20) protein_coding-exon (ENSMUSG00000033597.9, exon 16 of 20) 672 ENSMUSG00000033597.9 ENSMUSG00000033597 ENSMUST00000235032 Caskin1 protein_coding Interval_13956 chr10 25021880 25022349 + 0 NA intron (ENSMUSG00000111970.1, intron 2 of 3) lincRNA-intron (ENSMUSG00000111970.1, intron 1 of 1) 22094 ENSMUSG00000111970.1 ENSMUSG00000111970 ENSMUST00000218700 Gm47715 lincRNA Interval_129511 chr5 120660852 120661172 + 0 NA intron (ENSMUSG00000029602.11, intron 5 of 20) protein_coding-intron (ENSMUSG00000029602.11, intron 6 of 21) 11824 ENSMUSG00000029602.11 ENSMUSG00000029602 ENSMUST00000154759 Rasal1 protein_coding Interval_78373 chr18 12255507 12256680 + 0 NA intron (ENSMUSG00000057766.14, intron 8 of 8) protein_coding-intron (ENSMUSG00000057766.14, intron 9 of 9) 26252 ENSMUSG00000057766.14 ENSMUSG00000057766 ENSMUST00000142066 Ankrd29 protein_coding Interval_35785 chr12 29534486 29535165 + 0 NA promoter-TSS (ENSMUSG00000112390.1) processed_transcript-promoter-TSS (ENSMUSG00000112390.1) -3710 ENSMUSG00000112390.1 ENSMUSG00000112390 ENSMUST00000218104 Gm20208 processed_transcript Interval_47467 chr13 84862593 84862858 + 0 NA Intergenic Intergenic 111592 ENSMUSG00000114338.1 ENSMUSG00000114338 ENSMUST00000225386 Gm4059 processed_pseudogene Interval_147892 chr7 75141995 75143131 + 0 NA intron (ENSMUSG00000053025.13, intron 1 of 7) protein_coding-intron (ENSMUSG00000053025.13, intron 6 of 12) 5163 ENSMUSG00000053025.13 ENSMUSG00000053025 ENSMUST00000206236 Sv2b protein_coding Interval_2084 chr1 36303143 36303862 + 0 NA Intergenic Intergenic -4256 ENSMUSG00000037447.16 ENSMUSG00000037447 ENSMUST00000141121 Arid5a protein_coding Interval_60774 chr15 76669238 76670242 + 0 NA promoter-TSS (ENSMUSG00000033837.5) protein_coding-promoter-TSS (ENSMUSG00000033837.5) 62 ENSMUSG00000033837.5 ENSMUSG00000033837 ENSMUST00000230207 Foxh1 protein_coding Interval_72222 chr17 28667217 28667515 + 0 NA intron (ENSMUSG00000036196.16, intron 5 of 11) protein_coding-intron (ENSMUSG00000036196.16, intron 5 of 19) 22423 ENSMUSG00000036196.16 ENSMUSG00000036196 ENSMUST00000233213 Slc26a8 protein_coding Interval_16967 chr10 70186165 70186602 + 0 NA intron (ENSMUSG00000048701.13, intron 2 of 3) protein_coding-intron (ENSMUSG00000048701.13, intron 2 of 2) 11372 ENSMUSG00000048701.13 ENSMUSG00000048701 ENSMUST00000135607 Ccdc6 protein_coding Interval_6064 chr1 95720744 95721399 + 0 NA Intergenic Intergenic -4553 ENSMUSG00000100777.1 ENSMUSG00000100777 ENSMUST00000187352 4930598F16Rik lincRNA Interval_106408 chr3 95977009 95977204 + 0 NA Intergenic Intergenic -12718 ENSMUSG00000106640.1 ENSMUSG00000106640 ENSMUST00000197308 Gm20940 processed_pseudogene Interval_127250 chr5 101868377 101868606 + 0 NA intron (ENSMUSG00000043940.15, intron 45 of 64) protein_coding-intron (ENSMUSG00000043940.15, intron 47 of 66) 31039 ENSMUSG00000092354.7 ENSMUSG00000092354 ENSMUST00000174312 Gm20548 antisense Interval_10120 chr1 165916681 165916895 + 0 NA intron (ENSMUSG00000026565.18, intron 3 of 16) protein_coding-intron (ENSMUSG00000026565.18, intron 3 of 14) -24830 ENSMUSG00000099008.1 ENSMUSG00000099008 ENSMUST00000184037 Gm17976 processed_pseudogene Interval_58722 chr15 37335767 37337332 + 0 NA intron (ENSMUSG00000022286.16, intron 4 of 8) protein_coding-intron (ENSMUSG00000022286.16, intron 11 of 15) -3740 ENSMUSG00000089811.2 ENSMUSG00000089811 ENSMUST00000159341 Gm16138 processed_pseudogene Interval_36123 chr12 36108444 36108945 + 0 NA intron (ENSMUSG00000020547.5, intron 1 of 3) protein_coding-intron (ENSMUSG00000020547.5, intron 8 of 11) -6388 ENSMUSG00000113732.1 ENSMUSG00000113732 ENSMUST00000221209 Gm18115 processed_pseudogene Interval_135589 chr6 41090960 41091732 + 0 NA promoter-TSS (ENSMUSG00000091671.1) TR_V_pseudogene-promoter-TSS (ENSMUSG00000091671.1) -594 ENSMUSG00000091671.1 ENSMUSG00000091671 ENSMUST00000168322 Trbv10 TR_V_pseudogene Interval_96444 chr2 122917343 122917868 + 0 NA Intergenic Intergenic 145887 ENSMUSG00000005803.14 ENSMUSG00000005803 ENSMUST00000176343 Sqor protein_coding Interval_133550 chr6 6533425 6535190 + 0 NA Intergenic Intergenic 44356 ENSMUSG00000042541.10 ENSMUSG00000042541 ENSMUST00000205180 Sem1 protein_coding Interval_95005 chr2 102945128 102945421 + 0 NA Intergenic Intergenic -43816 ENSMUSG00000005087.17 ENSMUSG00000005087 ENSMUST00000124624 Cd44 protein_coding Interval_73643 chr17 42226070 42226813 + 0 NA Intergenic Intergenic -89548 ENSMUSG00000042256.5 ENSMUSG00000042256 ENSMUST00000232968 Ptchd4 protein_coding Interval_94736 chr2 93882731 93883117 + 0 NA Intergenic Intergenic -26192 ENSMUSG00000075023.11 ENSMUSG00000075023 ENSMUST00000128995 Accsl protein_coding Interval_74575 chr17 53503628 53504629 + 0 NA intron (ENSMUSG00000017831.8, intron 5 of 5) protein_coding-intron (ENSMUSG00000017831.8, intron 5 of 5) -3182 ENSMUSG00000117128.1 ENSMUSG00000117128 ENSMUST00000232747 Gm49915 antisense Interval_45361 chr13 54659150 54660425 + 0 NA intron (ENSMUSG00000025873.16, intron 10 of 10) protein_coding-intron (ENSMUSG00000025873.16, intron 10 of 10) 28021 ENSMUSG00000034928.16 ENSMUSG00000034928 ENSMUST00000150626 Rnf44 protein_coding Interval_3291 chr1 55769535 55769760 + 0 NA Intergenic Intergenic 67622 ENSMUSG00000038349.10 ENSMUSG00000038349 ENSMUST00000187059 Plcl1 protein_coding Interval_65104 chr16 19278059 19279436 + 0 NA Intergenic Intergenic -17888 ENSMUSG00000076940.3 ENSMUSG00000076940 ENSMUST00000197518 Iglv2 IG_V_gene Interval_160068 chr8 106161060 106161264 + 0 NA TTS (ENSMUSG00000031903.7) protein_coding-TTS (ENSMUSG00000031903.7) -7713 ENSMUSG00000031904.5 ENSMUSG00000031904 ENSMUST00000212802 Slc7a6 protein_coding Interval_137191 chr6 69493403 69494609 + 0 NA Intergenic Intergenic 6780 ENSMUSG00000095633.2 ENSMUSG00000095633 ENSMUST00000197448 Igkv4-58 IG_V_gene Interval_129603 chr5 121259947 121261343 + 0 NA intron (ENSMUSG00000042744.16, intron 4 of 75) protein_coding-intron (ENSMUSG00000042744.16, intron 4 of 75) -25585 ENSMUSG00000042744.16 ENSMUSG00000042744 ENSMUST00000130655 Hectd4 protein_coding Interval_3085 chr1 53053204 53053961 + 0 NA Intergenic Intergenic -8075 ENSMUSG00000026100.6 ENSMUSG00000026100 ENSMUST00000191197 Mstn protein_coding Interval_121506 chr5 3004320 3004577 + 0 NA Intergenic Intergenic -3396 ENSMUSG00000098947.2 ENSMUSG00000098947 ENSMUST00000183378 V1rg10 polymorphic_pseudogene Interval_4681 chr1 76845332 76845967 + 0 NA Intergenic Intergenic 182143 ENSMUSG00000100534.1 ENSMUSG00000100534 ENSMUST00000191156 Gm816 lincRNA Interval_68836 chr16 87484131 87484878 + 0 NA TTS (ENSMUSG00000025616.14) protein_coding-TTS (ENSMUSG00000025616.14) 1566 ENSMUSG00000025613.13 ENSMUSG00000025613 ENSMUST00000176750 Cct8 protein_coding Interval_113588 chr4 56872451 56872686 + 0 NA exon (ENSMUSG00000055296.14, exon 18 of 18) protein_coding-exon (ENSMUSG00000055296.14, exon 18 of 18) 22730 ENSMUSG00000065544.1 ENSMUSG00000065544 ENSMUST00000083610 Mir32 miRNA Interval_143837 chr7 16638592 16638819 + 0 NA Intergenic Intergenic 9084 ENSMUSG00000108610.1 ENSMUSG00000108610 ENSMUST00000206614 Gm29725 processed_pseudogene Interval_166212 chr9 57536857 57538168 + 0 NA promoter-TSS (ENSMUSG00000032305.15) protein_coding-promoter-TSS (ENSMUSG00000032305.15) -105 ENSMUSG00000032305.15 ENSMUSG00000032305 ENSMUST00000215897 Fam219b protein_coding Interval_143686 chr7 14536374 14536873 + 0 NA intron (ENSMUSG00000041596.12, intron 12 of 12) transcribed_unprocessed_pseudogene-intron (ENSMUSG00000041596.12, intron 12 of 12) -6557 ENSMUSG00000098741.1 ENSMUSG00000098741 ENSMUST00000185088 Obox4-ps2 unprocessed_pseudogene Interval_68698 chr16 84807163 84808453 + 0 NA intron (ENSMUSG00000053062.16, intron 3 of 9) protein_coding-intron (ENSMUSG00000053062.16, intron 3 of 3) -10289 ENSMUSG00000088249.1 ENSMUSG00000088249 ENSMUST00000157624 Gm25908 rRNA Interval_122940 chr5 27676933 27677675 + 0 NA intron (ENSMUSG00000061576.15, intron 12 of 12) protein_coding-intron (ENSMUSG00000061576.15, intron 16 of 25) 114387 ENSMUSG00000002221.11 ENSMUSG00000002221 ENSMUST00000199714 Paxip1 protein_coding Interval_119727 chr4 139543954 139544643 + 0 NA intron (ENSMUSG00000041025.15, intron 4 of 11) protein_coding-intron (ENSMUSG00000041025.15, intron 3 of 10) -30422 ENSMUSG00000041025.15 ENSMUSG00000041025 ENSMUST00000174078 Iffo2 protein_coding Interval_112270 chr4 39553689 39554313 + 0 NA Intergenic Intergenic 103706 ENSMUSG00000028287.4 ENSMUSG00000028287 ENSMUST00000029955 1700009N14Rik protein_coding Interval_97014 chr2 130509461 130509713 + 0 NA intron (ENSMUSG00000027303.18, intron 3 of 21) protein_coding-intron (ENSMUSG00000027303.18, intron 3 of 20) -14408 ENSMUSG00000115955.1 ENSMUSG00000115955 ENSMUST00000229108 9530056E24Rik TEC Interval_147629 chr7 70340284 70340526 + 0 NA Intergenic Intergenic -2562 ENSMUSG00000109097.1 ENSMUSG00000109097 ENSMUST00000207682 Gm29683 lincRNA Interval_173300 chrX 77531328 77531884 + 0 NA intron (ENSMUSG00000025246.13, intron 1 of 15) protein_coding-intron (ENSMUSG00000025246.13, intron 1 of 15) 20392 ENSMUSG00000025246.13 ENSMUSG00000025246 ENSMUST00000133893 Tbl1x protein_coding Interval_146803 chr7 51885823 51886049 + 0 NA intron (ENSMUSG00000030498.15, intron 1 of 5) protein_coding-intron (ENSMUSG00000030498.15, intron 1 of 7) -1982 ENSMUSG00000030498.15 ENSMUSG00000030498 ENSMUST00000145723 Gas2 protein_coding Interval_154042 chr8 12165803 12166107 + 0 NA Intergenic Intergenic -112864 ENSMUSG00000074473.1 ENSMUSG00000074473 ENSMUST00000098935 A230072I06Rik protein_coding Interval_128726 chr5 114940990 114941243 + 0 NA Intergenic Intergenic -1088 ENSMUSG00000029559.15 ENSMUSG00000029559 ENSMUST00000131771 2210016L21Rik protein_coding Interval_44600 chr13 46631638 46631896 + 0 NA intron (ENSMUSG00000021373.16, intron 6 of 11) protein_coding-intron (ENSMUSG00000021373.16, intron 7 of 12) -11987 ENSMUSG00000114596.1 ENSMUSG00000114596 ENSMUST00000225040 Gm47523 antisense Interval_53832 chr14 62456399 62456662 + 0 NA promoter-TSS (ENSMUSG00000021933.11) protein_coding-promoter-TSS (ENSMUSG00000021933.11) -244 ENSMUSG00000021933.11 ENSMUSG00000021933 ENSMUST00000128573 Gucy1b2 protein_coding Interval_85564 chr19 28628305 28628965 + 0 NA intron (ENSMUSG00000052942.13, intron 2 of 10) protein_coding-intron (ENSMUSG00000052942.13, intron 2 of 9) -45341 ENSMUSG00000089952.1 ENSMUSG00000089952 ENSMUST00000162380 4933413C19Rik sense_intronic Interval_33193 chr11 115140763 115141642 + 0 NA intron (ENSMUSG00000020732.13, intron 1 of 1) protein_coding-intron (ENSMUSG00000020732.13, intron 1 of 8) -13001 ENSMUSG00000020732.13 ENSMUSG00000020732 ENSMUST00000156383 Rab37 protein_coding Interval_146593 chr7 47144204 47144758 + 0 NA promoter-TSS (ENSMUSG00000109200.1) lincRNA-promoter-TSS (ENSMUSG00000109200.1) -159 ENSMUSG00000109200.1 ENSMUSG00000109200 ENSMUST00000207829 Gm44969 lincRNA Interval_64387 chr16 11035974 11036847 + 0 NA TTS (ENSMUSG00000115992.1) lincRNA-TTS (ENSMUSG00000115992.1) 921 ENSMUSG00000115911.1 ENSMUSG00000115911 ENSMUST00000230459 Gm3919 processed_pseudogene Interval_124422 chr5 45906220 45906656 + 0 NA Intergenic Intergenic 25971 ENSMUSG00000106602.1 ENSMUSG00000106602 ENSMUST00000198088 4930405L22Rik lincRNA Interval_45129 chr13 52554266 52554652 + 0 NA Intergenic Intergenic -23180 ENSMUSG00000047842.7 ENSMUSG00000047842 ENSMUST00000057442 Diras2 protein_coding Interval_79013 chr18 23942036 23942659 + 0 NA Intergenic Intergenic -1550 ENSMUSG00000117504.1 ENSMUSG00000117504 ENSMUST00000235052 Gm46611 processed_pseudogene Interval_163615 chr9 22552146 22552594 + 0 NA intron (ENSMUSG00000035919.16, intron 2 of 5) protein_coding-intron (ENSMUSG00000035919.16, intron 5 of 21) 39913 ENSMUSG00000035919.16 ENSMUSG00000035919 ENSMUST00000124076 Bbs9 protein_coding Interval_61184 chr15 79828294 79829226 + 0 NA exon (ENSMUSG00000089715.12, exon 2 of 2) protein_coding-exon (ENSMUSG00000089715.12, exon 2 of 2) 5189 ENSMUSG00000089715.12 ENSMUSG00000089715 ENSMUST00000129614 Cbx6 protein_coding Interval_159782 chr8 103266193 103266417 + 0 NA Intergenic Intergenic -5086 ENSMUSG00000109701.1 ENSMUSG00000109701 ENSMUST00000209324 Gm32531 lincRNA Interval_171480 chr9 118676997 118677281 + 0 NA intron (ENSMUSG00000039115.13, intron 11 of 27) protein_coding-intron (ENSMUSG00000039115.13, intron 11 of 27) -86944 ENSMUSG00000110676.1 ENSMUSG00000110676 ENSMUST00000212679 Gm45897 lincRNA Interval_168641 chr9 84856589 84857247 + 0 NA intron (ENSMUSG00000099724.2, intron 1 of 1) lincRNA-intron (ENSMUSG00000099724.2, intron 1 of 1) -1789 ENSMUSG00000111500.1 ENSMUSG00000111500 ENSMUST00000213542 Gm48820 lincRNA Interval_70768 chr17 14264008 14264547 + 0 NA intron (ENSMUSG00000117254.1, intron 2 of 2) lincRNA-intron (ENSMUSG00000117254.1, intron 2 of 2) 14426 ENSMUSG00000117254.1 ENSMUSG00000117254 ENSMUST00000233271 Gm34567 lincRNA Interval_65170 chr16 20325335 20325607 + 0 NA promoter-TSS (ENSMUSG00000022818.13) protein_coding-promoter-TSS (ENSMUSG00000022818.13) -8721 ENSMUSG00000022818.13 ENSMUSG00000022818 ENSMUST00000182669 Cyp2ab1 protein_coding Interval_4143 chr1 70620489 70620805 + 0 NA intron (ENSMUSG00000053153.14, intron 7 of 7) protein_coding-intron (ENSMUSG00000053153.14, intron 16 of 16) 23832 ENSMUSG00000075952.1 ENSMUSG00000075952 ENSMUST00000102000 Gm23422 snRNA Interval_30648 chr11 95675702 95676598 + 0 NA TTS (ENSMUSG00000038845.11) protein_coding-TTS (ENSMUSG00000038845.11) 9140 ENSMUSG00000038845.11 ENSMUSG00000038845 ENSMUST00000123001 Phb protein_coding Interval_76279 chr17 78697212 78697548 + 0 NA intron (ENSMUSG00000024077.15, intron 2 of 17) protein_coding-intron (ENSMUSG00000024077.15, intron 2 of 17) 39816 ENSMUSG00000024077.15 ENSMUSG00000024077 ENSMUST00000145480 Strn protein_coding Interval_81168 chr18 55547203 55547451 + 0 NA Intergenic Intergenic -30213 ENSMUSG00000103555.1 ENSMUSG00000103555 ENSMUST00000192601 Gm37337 TEC Interval_46038 chr13 60486722 60487235 + 0 NA exon (ENSMUSG00000114452.1, exon 1 of 2) lincRNA-exon (ENSMUSG00000114452.1, exon 1 of 2) 321 ENSMUSG00000114452.1 ENSMUSG00000114452 ENSMUST00000225622 A530001N23Rik lincRNA Interval_34099 chr11 120645439 120645678 + 0 NA TTS (ENSMUSG00000025141.3) protein_coding-TTS (ENSMUSG00000025141.3) -1888 ENSMUSG00000025140.15 ENSMUSG00000025140 ENSMUST00000133908 Pycr1 protein_coding Interval_96780 chr2 128152800 128153743 + 0 NA intron (ENSMUSG00000027381.16, intron 3 of 3) protein_coding-intron (ENSMUSG00000027381.16, intron 3 of 4) 27233 ENSMUSG00000027381.16 ENSMUSG00000027381 ENSMUST00000132201 Bcl2l11 protein_coding Interval_74808 chr17 56664064 56665026 + 0 NA TTS (ENSMUSG00000040828.10) protein_coding-TTS (ENSMUSG00000040828.10) -8839 ENSMUSG00000002372.9 ENSMUSG00000002372 ENSMUST00000232922 Ranbp3 protein_coding Interval_66879 chr16 38304459 38307417 + 0 NA TTS (ENSMUSG00000087568.1) antisense-TTS (ENSMUSG00000087568.1) 3322 ENSMUSG00000087568.1 ENSMUSG00000087568 ENSMUST00000133496 Maats1os antisense Interval_62292 chr15 89480518 89480899 + 0 NA intron (ENSMUSG00000084915.2, intron 1 of 1) antisense-intron (ENSMUSG00000084915.2, intron 3 of 3) 2969 ENSMUSG00000084915.2 ENSMUSG00000084915 ENSMUST00000168835 C230037L18Rik antisense Interval_115490 chr4 99354424 99355272 + 0 NA Intergenic Intergenic 30864 ENSMUSG00000103097.1 ENSMUSG00000103097 ENSMUST00000193877 Gm37556 TEC Interval_133092 chr5 149748384 149748798 + 0 NA intron (ENSMUSG00000051950.10, intron 3 of 4) protein_coding-intron (ENSMUSG00000051950.10, intron 12 of 14) 9059 ENSMUSG00000051950.10 ENSMUSG00000051950 ENSMUST00000201088 B3glct protein_coding Interval_140093 chr6 114087095 114087558 + 0 NA Intergenic Intergenic 25130 ENSMUSG00000107474.1 ENSMUSG00000107474 ENSMUST00000204499 Gm43932 processed_pseudogene Interval_173684 chrX 101932299 101932701 + 0 NA intron (ENSMUSG00000079481.11, intron 1 of 7) protein_coding-intron (ENSMUSG00000079481.11, intron 1 of 7) -19776 ENSMUSG00000087712.1 ENSMUSG00000087712 ENSMUST00000157087 Gm25828 snRNA Interval_74082 chr17 46486921 46487717 + 0 NA intron (ENSMUSG00000015599.9, intron 1 of 14) protein_coding-intron (ENSMUSG00000015599.9, intron 1 of 14) -3024 ENSMUSG00000015599.9 ENSMUSG00000015599 ENSMUST00000223818 Ttbk1 protein_coding Interval_65566 chr16 23378275 23378617 + 0 NA Intergenic Intergenic 45289 ENSMUSG00000084439.1 ENSMUSG00000084439 ENSMUST00000122490 Gm23430 misc_RNA Interval_159176 chr8 91375272 91376969 + 0 NA intron (ENSMUSG00000055932.15, intron 1 of 6) protein_coding-intron (ENSMUSG00000055932.15, intron 1 of 8) 15825 ENSMUSG00000110233.1 ENSMUSG00000110233 ENSMUST00000209572 Gm45427 TEC Interval_54536 chr14 70544961 70545881 + 0 NA promoter-TSS (ENSMUSG00000033589.4) protein_coding-promoter-TSS (ENSMUSG00000033589.4) -760 ENSMUSG00000033589.4 ENSMUSG00000033589 ENSMUST00000226592 Reep4 protein_coding Interval_6008 chr1 93872015 93872268 + 0 NA intron (ENSMUSG00000094651.2, intron 1 of 1) protein_coding-intron (ENSMUSG00000094651.2, intron 1 of 3) 10835 ENSMUSG00000094651.2 ENSMUSG00000094651 ENSMUST00000187896 Gal3st2 protein_coding Interval_70157 chr17 5862144 5862469 + 0 NA intron (ENSMUSG00000002365.10, intron 1 of 17) protein_coding-intron (ENSMUSG00000002365.10, intron 1 of 17) 20954 ENSMUSG00000002365.10 ENSMUSG00000002365 ENSMUST00000231803 Snx9 protein_coding Interval_36780 chr12 53837689 53837926 + 0 NA intron (ENSMUSG00000021010.9, intron 4 of 10) protein_coding-intron (ENSMUSG00000021010.9, intron 5 of 11) 241585 ENSMUSG00000099407.1 ENSMUSG00000099407 ENSMUST00000185390 1700060O08Rik antisense Interval_138909 chr6 93409993 93410876 + 0 NA Intergenic Intergenic 45123 ENSMUSG00000107848.1 ENSMUSG00000107848 ENSMUST00000203106 Gm44181 TEC Interval_150946 chr7 116574629 116575371 + 0 NA Intergenic Intergenic 28135 ENSMUSG00000108456.1 ENSMUSG00000108456 ENSMUST00000206533 4732496C06Rik lincRNA Interval_57743 chr15 17992927 17993402 + 0 NA Intergenic Intergenic -14266 ENSMUSG00000115192.1 ENSMUSG00000115192 ENSMUST00000228890 Gm18532 processed_pseudogene Interval_123349 chr5 31613494 31614375 + 0 NA promoter-TSS (ENSMUSG00000106918.3) protein_coding-promoter-TSS (ENSMUSG00000106918.3) -38 ENSMUSG00000105617.4 ENSMUSG00000105617 ENSMUST00000202033 Gm43809 processed_transcript Interval_139648 chr6 105389232 105389791 + 0 NA Intergenic Intergenic -10208 ENSMUSG00000094357.1 ENSMUSG00000094357 ENSMUST00000179099 Gm25570 miRNA Interval_35025 chr12 16723362 16724334 + 0 NA intron (ENSMUSG00000036523.16, intron 7 of 34) protein_coding-intron (ENSMUSG00000036523.16, intron 5 of 32) 43375 ENSMUSG00000105567.1 ENSMUSG00000105567 ENSMUST00000199946 Gm44305 miRNA Interval_72770 chr17 32060904 32061503 + 0 NA TTS (ENSMUSG00000058392.13) protein_coding-TTS (ENSMUSG00000058392.13) 24793 ENSMUSG00000058392.13 ENSMUSG00000058392 ENSMUST00000126602 Rrp1b protein_coding Interval_18993 chr10 93614286 93614719 + 0 NA Intergenic Intergenic -4360 ENSMUSG00000111366.1 ENSMUSG00000111366 ENSMUST00000213334 Gm47156 lincRNA Interval_56553 chr14 120312504 120313935 + 0 NA intron (ENSMUSG00000022139.17, intron 1 of 2) protein_coding-intron (ENSMUSG00000022139.17, intron 1 of 8) -66022 ENSMUSG00000022139.17 ENSMUSG00000022139 ENSMUST00000227153 Mbnl2 protein_coding Interval_4995 chr1 83933702 83933941 + 0 NA Intergenic Intergenic 11903 ENSMUSG00000077736.1 ENSMUSG00000077736 ENSMUST00000104548 Gm24555 snoRNA Interval_123383 chr5 32059069 32059514 + 0 NA intron (ENSMUSG00000052139.18, intron 2 of 2) protein_coding-intron (ENSMUSG00000052139.18, intron 13 of 13) -48428 ENSMUSG00000106894.1 ENSMUSG00000106894 ENSMUST00000201542 Gm17130 antisense Interval_34433 chr12 4127353 4128170 + 0 NA Intergenic Intergenic -5342 ENSMUSG00000020654.15 ENSMUSG00000020654 ENSMUST00000127110 Adcy3 protein_coding Interval_56589 chr14 120574486 120574736 + 0 NA Intergenic Intergenic -58351 ENSMUSG00000115648.1 ENSMUSG00000115648 ENSMUST00000226920 Gm49008 lincRNA Interval_21557 chr10 129879912 129880166 + 0 NA promoter-TSS (ENSMUSG00000059134.2) protein_coding-promoter-TSS (ENSMUSG00000059134.2) -188 ENSMUSG00000059134.2 ENSMUSG00000059134 ENSMUST00000081367 Olfr814 protein_coding Interval_59169 chr15 45856533 45856817 + 0 NA Intergenic Intergenic -105851 ENSMUSG00000115549.1 ENSMUSG00000115549 ENSMUST00000228018 Gm2203 processed_pseudogene Interval_105843 chr3 89672647 89673705 + 0 NA exon (ENSMUSG00000000794.9, exon 2 of 2) protein_coding-exon (ENSMUSG00000000794.9, exon 2 of 2) 10658 ENSMUSG00000000794.9 ENSMUSG00000000794 ENSMUST00000124584 Kcnn3 protein_coding Interval_133761 chr6 11793116 11794014 + 0 NA Intergenic Intergenic 113918 ENSMUSG00000029632.7 ENSMUSG00000029632 ENSMUST00000204714 Ndufa4 protein_coding Interval_107062 chr3 103238666 103239822 + 0 NA Intergenic Intergenic 8019 ENSMUSG00000104976.1 ENSMUSG00000104976 ENSMUST00000200621 Gm43060 processed_pseudogene Interval_121217 chr4 154125064 154125290 + 0 NA intron (ENSMUSG00000029026.17, intron 1 of 13) protein_coding-intron (ENSMUSG00000029026.17, intron 1 of 13) -8853 ENSMUSG00000088774.1 ENSMUSG00000088774 ENSMUST00000158149 Gm26036 snoRNA Interval_21151 chr10 126927292 126929254 + 0 NA Intergenic Intergenic -26923 ENSMUSG00000025436.12 ENSMUSG00000025436 ENSMUST00000220051 Atp23 protein_coding Interval_130883 chr5 133303546 133304629 + 0 NA Intergenic Intergenic -139255 ENSMUSG00000106097.1 ENSMUSG00000106097 ENSMUST00000198611 Gm42625 TEC Interval_150482 chr7 111060960 111063229 + 0 NA Intergenic Intergenic 8304 ENSMUSG00000005609.16 ENSMUSG00000005609 ENSMUST00000209912 Ctr9 protein_coding Interval_78527 chr18 14415043 14415333 + 0 NA Intergenic Intergenic -9680 ENSMUSG00000055795.6 ENSMUSG00000055795 ENSMUST00000069552 Gm5160 processed_pseudogene Interval_83830 chr19 4956710 4957348 + 0 NA Intergenic Intergenic -5301 ENSMUSG00000024902.5 ENSMUSG00000024902 ENSMUST00000235229 Mrpl11 protein_coding Interval_102182 chr3 19251122 19251335 + 0 NA intron (ENSMUSG00000069094.12, intron 3 of 8) protein_coding-intron (ENSMUSG00000069094.12, intron 3 of 12) 23448 ENSMUSG00000087108.1 ENSMUSG00000087108 ENSMUST00000141455 Gm16093 antisense Interval_164994 chr9 43754918 43755206 + 0 NA intron (ENSMUSG00000032012.9, intron 1 of 7) protein_coding-intron (ENSMUSG00000032012.9, intron 1 of 5) 10418 ENSMUSG00000032012.9 ENSMUSG00000032012 ENSMUST00000180221 Nectin1 protein_coding Interval_18728 chr10 89731510 89732908 + 0 NA promoter-TSS (ENSMUSG00000019948.4) protein_coding-promoter-TSS (ENSMUSG00000019948.4) 64 ENSMUSG00000019948.4 ENSMUSG00000019948 ENSMUST00000218568 Actr6 protein_coding Interval_23343 chr11 21594799 21595851 + 0 NA intron (ENSMUSG00000020319.9, intron 1 of 8) protein_coding-intron (ENSMUSG00000020319.9, intron 1 of 17) -23391 ENSMUSG00000020321.16 ENSMUSG00000020321 ENSMUST00000125302 Mdh1 protein_coding Interval_58844 chr15 38552138 38553315 + 0 NA intron (ENSMUSG00000102106.2, intron 2 of 2) lincRNA-intron (ENSMUSG00000102106.2, intron 2 of 2) -21270 ENSMUSG00000115587.1 ENSMUSG00000115587 ENSMUST00000226494 Gm29697 processed_pseudogene Interval_33867 chr11 119082842 119083086 + 0 NA intron (ENSMUSG00000039989.7, intron 3 of 4) protein_coding-intron (ENSMUSG00000039989.7, intron 3 of 4) 3257 ENSMUSG00000039989.7 ENSMUSG00000039989 ENSMUST00000145058 Cbx4 protein_coding Interval_170340 chr9 107279585 107281439 + 0 NA intron (ENSMUSG00000032577.16, intron 1 of 7) protein_coding-intron (ENSMUSG00000032577.16, intron 2 of 10) 8832 ENSMUSG00000032577.16 ENSMUSG00000032577 ENSMUST00000141596 Mapkapk3 protein_coding Interval_84349 chr19 10277151 10279161 + 0 NA intron (ENSMUSG00000035735.10, intron 1 of 19) protein_coding-intron (ENSMUSG00000035735.10, intron 1 of 19) -12770 ENSMUSG00000118330.1 ENSMUSG00000118330 ENSMUST00000237496 Gm30042 antisense Interval_20524 chr10 118460500 118462086 + 0 NA Intergenic Intergenic 19874 ENSMUSG00000111913.1 ENSMUSG00000111913 ENSMUST00000219775 Gm49751 TEC Interval_145871 chr7 40898182 40900215 + 0 NA promoter-TSS (ENSMUSG00000039257.11) protein_coding-promoter-TSS (ENSMUSG00000039257.11) -134 ENSMUSG00000039257.11 ENSMUSG00000039257 ENSMUST00000186352 Vstm2b protein_coding Interval_112737 chr4 44508699 44508943 + 0 NA Intergenic Intergenic -96226 ENSMUSG00000077587.1 ENSMUSG00000077587 ENSMUST00000104399 Gm24376 snoRNA Interval_116427 chr4 111754617 111755299 + 0 NA intron (ENSMUSG00000034401.16, intron 3 of 3) protein_coding-intron (ENSMUSG00000034401.16, intron 3 of 12) 34895 ENSMUSG00000034401.16 ENSMUSG00000034401 ENSMUST00000132802 Spata6 protein_coding Interval_145085 chr7 29942533 29945041 + 0 NA promoter-TSS (ENSMUSG00000059975.15) protein_coding-promoter-TSS (ENSMUSG00000059975.15) 10302 ENSMUSG00000059975.15 ENSMUSG00000059975 ENSMUST00000149793 Zfp74 protein_coding Interval_159591 chr8 95676669 95678958 + 0 NA promoter-TSS (ENSMUSG00000036564.17) protein_coding-promoter-TSS (ENSMUSG00000036564.17) -2419 ENSMUSG00000110701.1 ENSMUSG00000110701 ENSMUST00000212264 Gm6013 processed_pseudogene Interval_14261 chr10 29943998 29945474 + 0 NA Intergenic Intergenic 56696 ENSMUSG00000111195.1 ENSMUSG00000111195 ENSMUST00000213166 Gm48215 lincRNA Interval_173860 chrX 106041111 106041634 + 0 NA intron (ENSMUSG00000033792.12, intron 1 of 22) protein_coding-intron (ENSMUSG00000033792.12, intron 1 of 22) 21981 ENSMUSG00000031231.4 ENSMUSG00000031231 ENSMUST00000155377 Cox7b protein_coding Interval_41321 chr12 112831326 112833029 + 0 NA Intergenic Intergenic -2803 ENSMUSG00000047832.9 ENSMUSG00000047832 ENSMUST00000223432 Cdca4 protein_coding Interval_159947 chr8 105346687 105349599 + 0 NA promoter-TSS (ENSMUSG00000014778.10) protein_coding-promoter-TSS (ENSMUSG00000014778.10) -7319 ENSMUSG00000014786.8 ENSMUSG00000014786 ENSMUST00000212772 Slc9a5 protein_coding Interval_157988 chr8 77579053 77579810 + 0 NA intron (ENSMUSG00000037134.17, intron 10 of 11) protein_coding-intron (ENSMUSG00000037134.17, intron 10 of 11) 5212 ENSMUSG00000109787.1 ENSMUSG00000109787 ENSMUST00000209267 Gm45286 TEC Interval_118447 chr4 131669477 131670499 + 0 NA intron (ENSMUSG00000087171.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000087171.1, intron 2 of 2) 2153 ENSMUSG00000087171.1 ENSMUSG00000087171 ENSMUST00000138697 Gm12962 lincRNA Interval_143122 chr6 149492051 149493275 + 0 NA intron (ENSMUSG00000003452.15, intron 2 of 9) protein_coding-intron (ENSMUSG00000003452.15, intron 2 of 9) -58190 ENSMUSG00000082072.1 ENSMUSG00000082072 ENSMUST00000119145 Gm15785 processed_pseudogene Interval_88043 chr19 58335390 58336439 + 0 NA intron (ENSMUSG00000025089.15, intron 3 of 8) protein_coding-intron (ENSMUSG00000025089.15, intron 5 of 10) 118552 ENSMUSG00000025089.15 ENSMUSG00000025089 ENSMUST00000135730 Gfra1 protein_coding Interval_163458 chr9 21534076 21534568 + 0 NA promoter-TSS (ENSMUSG00000092261.1) processed_pseudogene-promoter-TSS (ENSMUSG00000092261.1) -337 ENSMUSG00000092261.1 ENSMUSG00000092261 ENSMUST00000173684 Gm20519 processed_pseudogene Interval_39122 chr12 85241899 85242201 + 0 NA exon (ENSMUSG00000021245.15, exon 1 of 4) protein_coding-exon (ENSMUSG00000021245.15, exon 1 of 4) 3935 ENSMUSG00000098263.1 ENSMUSG00000098263 ENSMUST00000184173 Mir6938 miRNA Interval_27370 chr11 67022805 67025466 + 0 NA Intergenic Intergenic -1019 ENSMUSG00000050270.12 ENSMUSG00000050270 ENSMUST00000061786 Tmem220 protein_coding Interval_168431 chr9 80243948 80244946 + 0 NA intron (ENSMUSG00000033577.18, intron 6 of 35) protein_coding-intron (ENSMUSG00000033577.18, intron 6 of 32) 21003 ENSMUSG00000099016.1 ENSMUSG00000099016 ENSMUST00000183413 Gm27227 antisense Interval_55032 chr14 77250458 77251523 + 0 NA TTS (ENSMUSG00000063556.5) processed_pseudogene-TTS (ENSMUSG00000063556.5) 1324 ENSMUSG00000063556.5 ENSMUSG00000063556 ENSMUST00000099431 Gm10132 processed_pseudogene Interval_51718 chr14 31618405 31618773 + 0 NA intron (ENSMUSG00000021884.18, intron 10 of 14) protein_coding-intron (ENSMUSG00000021884.18, intron 12 of 16) 22289 ENSMUSG00000115022.1 ENSMUSG00000115022 ENSMUST00000167175 Gm49387 protein_coding Interval_82404 chr18 73746784 73747283 + 0 NA intron (ENSMUSG00000036941.2, intron 2 of 3) protein_coding-intron (ENSMUSG00000036941.2, intron 2 of 3) 7446 ENSMUSG00000036941.2 ENSMUSG00000036941 ENSMUST00000041138 Elac1 protein_coding Interval_29007 chr11 79878682 79878888 + 0 NA Intergenic Intergenic 14930 ENSMUSG00000065283.1 ENSMUSG00000065283 ENSMUST00000083349 Gm24454 snoRNA Interval_32895 chr11 112872374 112873164 + 0 NA Intergenic Intergenic 47590 ENSMUSG00000020624.3 ENSMUSG00000020624 ENSMUST00000153429 4933434M16Rik lincRNA Interval_13180 chr10 12867793 12869701 + 0 NA promoter-TSS (ENSMUSG00000019820.11) protein_coding-promoter-TSS (ENSMUSG00000019820.11) 22659 ENSMUSG00000112698.1 ENSMUSG00000112698 ENSMUST00000219425 Gm7525 processed_pseudogene Interval_9484 chr1 157560442 157561358 + 0 NA exon (ENSMUSG00000026589.14, exon 20 of 27) protein_coding-exon (ENSMUSG00000026589.14, exon 20 of 27) 22849 ENSMUSG00000026589.14 ENSMUSG00000026589 ENSMUST00000155665 Sec16b protein_coding Interval_91251 chr2 36463371 36463652 + 0 NA Intergenic Intergenic 10924 ENSMUSG00000094266.1 ENSMUSG00000094266 ENSMUST00000072854 Olfr340 protein_coding Interval_55008 chr14 76849990 76850659 + 0 NA intron (ENSMUSG00000115353.1, intron 3 of 3) lincRNA-intron (ENSMUSG00000115353.1, intron 3 of 3) -11247 ENSMUSG00000115596.1 ENSMUSG00000115596 ENSMUST00000227341 Gm48969 lincRNA Interval_33616 chr11 117536665 117537223 + 0 NA Intergenic Intergenic 13341 ENSMUSG00000085419.1 ENSMUSG00000085419 ENSMUST00000132261 Gm11734 lincRNA Interval_90672 chr2 31800297 31801978 + 0 NA TTS (ENSMUSG00000026842.16) protein_coding-TTS (ENSMUSG00000026842.16) 9443 ENSMUSG00000043102.2 ENSMUSG00000043102 ENSMUST00000057407 Qrfp protein_coding Interval_68100 chr16 65061712 65063298 + 0 NA intron (ENSMUSG00000050783.5, intron 2 of 2) protein_coding-intron (ENSMUSG00000050783.5, intron 2 of 2) 43349 ENSMUSG00000050783.5 ENSMUSG00000050783 ENSMUST00000063076 Htr1f protein_coding Interval_7934 chr1 134637925 134638973 + 0 NA Intergenic Intergenic 8071 ENSMUSG00000097435.1 ENSMUSG00000097435 ENSMUST00000181197 Gm26783 lincRNA Interval_163196 chr9 17874386 17875520 + 0 NA Intergenic Intergenic -89166 ENSMUSG00000111161.1 ENSMUSG00000111161 ENSMUST00000217305 Gm48849 processed_pseudogene Interval_98621 chr2 153603481 153604191 + 0 NA Intergenic Intergenic 28895 ENSMUSG00000056941.17 ENSMUSG00000056941 ENSMUST00000109782 Commd7 protein_coding Interval_75393 chr17 66331186 66331566 + 0 NA Intergenic Intergenic -11864 ENSMUSG00000117010.1 ENSMUSG00000117010 ENSMUST00000233050 Gm49933 processed_pseudogene Interval_14940 chr10 41295010 41295475 + 0 NA intron (ENSMUSG00000038417.4, intron 1 of 22) protein_coding-intron (ENSMUSG00000038417.4, intron 1 of 22) 8018 ENSMUSG00000038417.4 ENSMUSG00000038417 ENSMUST00000043814 Fig4 protein_coding Interval_95748 chr2 115714172 115716251 + 0 NA intron (ENSMUSG00000040282.13, intron 10 of 10) protein_coding-intron (ENSMUSG00000040282.13, intron 10 of 10) 76486 ENSMUSG00000088606.1 ENSMUSG00000088606 ENSMUST00000157981 Mir1951 miRNA Interval_32049 chr11 104707224 104707879 + 0 NA intron (ENSMUSG00000040838.10, intron 8 of 187) protein_coding-intron (ENSMUSG00000040838.10, intron 6 of 20) 21844 ENSMUSG00000040838.10 ENSMUSG00000040838 ENSMUST00000175713 Gm11639 protein_coding Interval_81686 chr18 63458412 63458615 + 0 NA Intergenic Intergenic 41259 ENSMUSG00000097980.2 ENSMUSG00000097980 ENSMUST00000237281 Gm26972 lincRNA Interval_48550 chr13 100083874 100085156 + 0 NA intron (ENSMUSG00000049658.13, intron 5 of 6) protein_coding-intron (ENSMUSG00000049658.13, intron 7 of 38) -18064 ENSMUSG00000049658.13 ENSMUSG00000049658 ENSMUST00000163097 Bdp1 protein_coding Interval_70741 chr17 14100872 14101830 + 0 NA Intergenic Intergenic 5099 ENSMUSG00000099476.1 ENSMUSG00000099476 ENSMUST00000188802 4930488N24Rik unprocessed_pseudogene Interval_99477 chr2 162181961 162183312 + 0 NA intron (ENSMUSG00000053141.16, intron 6 of 29) protein_coding-intron (ENSMUSG00000053141.16, intron 6 of 30) -208177 ENSMUSG00000084919.1 ENSMUSG00000084919 ENSMUST00000151688 Ptprtos antisense Interval_74795 chr17 56584104 56585670 + 0 NA promoter-TSS (ENSMUSG00000042625.16) protein_coding-promoter-TSS (ENSMUSG00000042625.16) -12389 ENSMUSG00000042625.16 ENSMUSG00000042625 ENSMUST00000146070 Safb2 protein_coding Interval_61352 chr15 81000163 81000935 + 0 NA intron (ENSMUSG00000042303.19, intron 2 of 5) protein_coding-intron (ENSMUSG00000042303.19, intron 1 of 4) 5861 ENSMUSG00000115976.1 ENSMUSG00000115976 ENSMUST00000230118 Gm31462 antisense Interval_1900 chr1 34426487 34427719 + 0 NA exon (ENSMUSG00000102336.1, exon 1 of 1) lincRNA-exon (ENSMUSG00000102336.1, exon 1 of 1) 6096 ENSMUSG00000092852.1 ENSMUSG00000092852 ENSMUST00000175111 Mir5103 miRNA Interval_107837 chr3 116024126 116024949 + 0 NA TTS (ENSMUSG00000027963.14) protein_coding-TTS (ENSMUSG00000027963.14) 16709 ENSMUSG00000027963.14 ENSMUSG00000027963 ENSMUST00000106502 Extl2 protein_coding Interval_80441 chr18 42261565 42262637 + 0 NA promoter-TSS (ENSMUSG00000024493.9) protein_coding-promoter-TSS (ENSMUSG00000024493.9) 9703 ENSMUSG00000096699.1 ENSMUSG00000096699 ENSMUST00000091925 Rps19-ps4 processed_pseudogene Interval_53683 chr14 60849994 60850555 + 0 NA intron (ENSMUSG00000021993.10, intron 16 of 19) protein_coding-intron (ENSMUSG00000021993.10, intron 16 of 18) 65692 ENSMUSG00000021993.10 ENSMUSG00000021993 ENSMUST00000223709 Mipep protein_coding Interval_117270 chr4 121175252 121176438 + 0 NA intron (ENSMUSG00000049878.13, intron 2 of 5) protein_coding-intron (ENSMUSG00000049878.13, intron 4 of 7) 39239 ENSMUSG00000049878.13 ENSMUSG00000049878 ENSMUST00000222814 Rlf protein_coding Interval_109350 chr3 139530867 139531531 + 0 NA intron (ENSMUSG00000047940.13, intron 12 of 13) protein_coding-intron (ENSMUSG00000047940.13, intron 12 of 13) -113336 ENSMUSG00000065675.1 ENSMUSG00000065675 ENSMUST00000083741 Gm24260 snRNA Interval_11486 chr1 182147528 182148072 + 0 NA Intergenic Intergenic 16686 ENSMUSG00000091013.3 ENSMUSG00000091013 ENSMUST00000169123 Vmn1r1 protein_coding Interval_73613 chr17 41190359 41191887 + 0 NA Intergenic Intergenic 90085 ENSMUSG00000117062.1 ENSMUSG00000117062 ENSMUST00000232966 Ldha-ps3 processed_pseudogene Interval_23909 chr11 28186695 28188028 + 0 NA Intergenic Intergenic 141326 ENSMUSG00000083201.1 ENSMUSG00000083201 ENSMUST00000119821 Gm12080 processed_pseudogene Interval_94384 chr2 90661259 90661513 + 0 NA Intergenic Intergenic -23785 ENSMUSG00000051329.13 ENSMUSG00000051329 ENSMUST00000126503 Nup160 protein_coding Interval_46527 chr13 66833864 66835605 + 0 NA Intergenic Intergenic 11302 ENSMUSG00000114793.1 ENSMUSG00000114793 ENSMUST00000225417 Gm48414 processed_pseudogene Interval_33930 chr11 119503112 119504153 + 0 NA TTS (ENSMUSG00000039850.16) protein_coding-TTS (ENSMUSG00000039850.16) 12081 ENSMUSG00000039850.16 ENSMUSG00000039850 ENSMUST00000132015 Endov protein_coding Interval_66124 chr16 31781353 31781606 + 0 NA intron (ENSMUSG00000022770.17, intron 6 of 25) protein_coding-intron (ENSMUSG00000022770.17, intron 5 of 24) 20513 ENSMUSG00000116626.1 ENSMUSG00000116626 ENSMUST00000232512 Gm49705 TEC Interval_154959 chr8 25277016 25277758 + 0 NA Intergenic Intergenic 28883 ENSMUSG00000110140.1 ENSMUSG00000110140 ENSMUST00000209774 5430421F17Rik lincRNA Interval_170889 chr9 111575688 111576536 + 0 NA intron (ENSMUSG00000032502.8, intron 7 of 9) protein_coding-intron (ENSMUSG00000032502.8, intron 8 of 10) 14689 ENSMUSG00000106232.1 ENSMUSG00000106232 ENSMUST00000197414 Gm43236 antisense Interval_98349 chr2 151684116 151684477 + 0 NA intron (ENSMUSG00000087035.1, intron 1 of 1) protein_coding-intron (ENSMUSG00000087035.1, intron 2 of 2) 2043 ENSMUSG00000087035.1 ENSMUSG00000087035 ENSMUST00000137422 Tmem74bos protein_coding Interval_167009 chr9 64487381 64489038 + 0 NA intron (ENSMUSG00000036466.17, intron 1 of 24) protein_coding-intron (ENSMUSG00000036466.17, intron 1 of 24) 102583 ENSMUSG00000036466.17 ENSMUSG00000036466 ENSMUST00000153934 Megf11 protein_coding Interval_40496 chr12 105248396 105249330 + 0 NA Intergenic Intergenic -26167 ENSMUSG00000041359.14 ENSMUSG00000041359 ENSMUST00000176952 Tcl1 protein_coding Interval_77865 chr18 4806338 4806506 + 0 NA Intergenic Intergenic -6064 ENSMUSG00000097043.1 ENSMUSG00000097043 ENSMUST00000180904 Gm10556 lincRNA Interval_174659 chrX 162682976 162683261 + 0 NA Intergenic Intergenic 4111 ENSMUSG00000083963.1 ENSMUSG00000083963 ENSMUST00000117668 Gm15203 processed_pseudogene Interval_81789 chr18 64686181 64686736 + 0 NA Intergenic Intergenic -1348 ENSMUSG00000118224.1 ENSMUSG00000118224 ENSMUST00000237925 Gm50352 processed_pseudogene Interval_14884 chr10 40830916 40831558 + 0 NA TTS (ENSMUSG00000038446.8) protein_coding-TTS (ENSMUSG00000038446.8) 14700 ENSMUSG00000038446.8 ENSMUSG00000038446 ENSMUST00000215441 Cdc40 protein_coding Interval_14236 chr10 29338606 29339092 + 0 NA intron (ENSMUSG00000019883.11, intron 5 of 5) protein_coding-intron (ENSMUSG00000019883.11, intron 5 of 5) -10736 ENSMUSG00000096841.1 ENSMUSG00000096841 ENSMUST00000178368 Gm25596 snRNA Interval_57878 chr15 24401833 24402114 + 0 NA Intergenic Intergenic -26298 ENSMUSG00000115198.1 ENSMUSG00000115198 ENSMUST00000228438 Gm49729 lincRNA Interval_70320 chr17 8455719 8456694 + 0 NA Intergenic Intergenic 20795 ENSMUSG00000062327.10 ENSMUSG00000062327 ENSMUST00000177118 T protein_coding Interval_154479 chr8 18582355 18582750 + 0 NA Intergenic Intergenic -13024 ENSMUSG00000039842.15 ENSMUSG00000039842 ENSMUST00000141244 Mcph1 protein_coding Interval_173474 chrX 94540477 94542749 + 0 NA intron (ENSMUSG00000025151.16, intron 1 of 11) protein_coding-intron (ENSMUSG00000025151.16, intron 1 of 12) 377 ENSMUSG00000025151.16 ENSMUSG00000025151 ENSMUST00000133982 Maged1 protein_coding Interval_110150 chr3 153798122 153798322 + 0 NA Intergenic Intergenic -6135 ENSMUSG00000062046.1 ENSMUSG00000062046 ENSMUST00000081193 5730460C07Rik lincRNA Interval_17709 chr10 79681440 79683553 + 0 NA promoter-TSS (ENSMUSG00000020307.15) protein_coding-promoter-TSS (ENSMUSG00000020307.15) -2507 ENSMUSG00000020307.15 ENSMUSG00000020307 ENSMUST00000220328 Cdc34 protein_coding Interval_32194 chr11 106047433 106048142 + 0 NA intron (ENSMUSG00000049354.8, intron 3 of 3) protein_coding-intron (ENSMUSG00000049354.8, intron 3 of 6) 4065 ENSMUSG00000085033.1 ENSMUSG00000085033 ENSMUST00000135857 Gm11646 antisense Interval_41519 chr12 115722913 115723363 + 0 NA Intergenic Intergenic 19509 ENSMUSG00000096577.2 ENSMUSG00000096577 ENSMUST00000196690 Ighv1-71 IG_V_gene Interval_60576 chr15 75286446 75287446 + 0 NA Intergenic Intergenic 10153 ENSMUSG00000099467.1 ENSMUSG00000099467 ENSMUST00000189064 Gm28116 unprocessed_pseudogene Interval_48199 chr13 97137394 97138633 + 0 NA promoter-TSS (ENSMUSG00000021666.16) protein_coding-promoter-TSS (ENSMUSG00000021666.16) 5 ENSMUSG00000021666.16 ENSMUSG00000021666 ENSMUST00000159321 Gfm2 protein_coding Interval_4032 chr1 66738353 66739214 + 0 NA intron (ENSMUSG00000026004.15, intron 5 of 13) protein_coding-intron (ENSMUSG00000026004.15, intron 6 of 13) 29948 ENSMUSG00000102559.1 ENSMUSG00000102559 ENSMUST00000195411 Gm37570 TEC Interval_87020 chr19 45573372 45574248 + 0 NA intron (ENSMUSG00000041035.9, intron 5 of 6) protein_coding-intron (ENSMUSG00000041035.9, intron 4 of 5) -1364 ENSMUSG00000041035.9 ENSMUSG00000041035 ENSMUST00000161373 Gm17018 protein_coding Interval_119257 chr4 136494798 136495772 + 0 NA intron (ENSMUSG00000001089.14, intron 1 of 1) protein_coding-intron (ENSMUSG00000001089.14, intron 1 of 3) 25524 ENSMUSG00000001089.14 ENSMUSG00000001089 ENSMUST00000168936 Luzp1 protein_coding Interval_93765 chr2 76709172 76709396 + 0 NA exon (ENSMUSG00000051747.15, exon 186 of 191) protein_coding-exon (ENSMUSG00000051747.15, exon 186 of 191) -13492 ENSMUSG00000086354.2 ENSMUSG00000086354 ENSMUST00000156809 Gm13938 antisense Interval_149517 chr7 99294226 99295311 + 0 NA intron (ENSMUSG00000055407.14, intron 1 of 3) protein_coding-intron (ENSMUSG00000055407.14, intron 1 of 3) 25636 ENSMUSG00000055407.14 ENSMUSG00000055407 ENSMUST00000209094 Map6 protein_coding Interval_163835 chr9 27016142 27016477 + 0 NA intron (ENSMUSG00000031988.10, intron 2 of 3) protein_coding-intron (ENSMUSG00000031988.10, intron 2 of 5) 8612 ENSMUSG00000111505.1 ENSMUSG00000111505 ENSMUST00000215598 Gm48673 TEC Interval_55277 chr14 79919132 79919391 + 0 NA intron (ENSMUSG00000097927.2, intron 1 of 4) lincRNA-intron (ENSMUSG00000097927.2, intron 3 of 4) 20794 ENSMUSG00000115190.1 ENSMUSG00000115190 ENSMUST00000227349 Gm49542 lincRNA Interval_111013 chr4 11205447 11205713 + 0 NA TTS (ENSMUSG00000028212.16) protein_coding-TTS (ENSMUSG00000028212.16) 14226 ENSMUSG00000028212.16 ENSMUSG00000028212 ENSMUST00000149075 Ccne2 protein_coding Interval_163016 chr9 14559404 14560097 + 0 NA promoter-TSS (ENSMUSG00000013076.17) protein_coding-promoter-TSS (ENSMUSG00000013076.17) -33989 ENSMUSG00000111612.1 ENSMUSG00000111612 ENSMUST00000213361 Gm47090 processed_pseudogene Interval_142421 chr6 141888135 141888477 + 0 NA Intergenic Intergenic 21948 ENSMUSG00000107516.1 ENSMUSG00000107516 ENSMUST00000204491 Gm30784 lincRNA Interval_112255 chr4 38733619 38734080 + 0 NA intron (ENSMUSG00000085632.1, intron 1 of 5) lincRNA-intron (ENSMUSG00000085632.1, intron 1 of 5) 70040 ENSMUSG00000081427.1 ENSMUSG00000081427 ENSMUST00000122005 Gm12382 processed_pseudogene Interval_159141 chr8 91004172 91004429 + 0 NA intron (ENSMUSG00000056608.14, intron 16 of 17) protein_coding-intron (ENSMUSG00000056608.14, intron 18 of 39) -50964 ENSMUSG00000110377.1 ENSMUSG00000110377 ENSMUST00000210196 Gm45363 TEC Interval_66837 chr16 37989345 37990066 + 0 NA intron (ENSMUSG00000046961.8, intron 7 of 9) protein_coding-intron (ENSMUSG00000046961.8, intron 7 of 9) 9618 ENSMUSG00000065188.1 ENSMUSG00000065188 ENSMUST00000083254 Gm25140 snRNA Interval_9249 chr1 155489935 155490345 + 0 NA Intergenic Intergenic 37003 ENSMUSG00000073535.5 ENSMUSG00000073535 ENSMUST00000194133 Gm5532 lincRNA Interval_89499 chr2 21150123 21150507 + 0 NA Intergenic Intergenic -8361 ENSMUSG00000086821.3 ENSMUSG00000086821 ENSMUST00000137984 Gm13377 unprocessed_pseudogene Interval_49447 chr13 112073676 112074130 + 0 NA Intergenic Intergenic -64213 ENSMUSG00000114361.1 ENSMUSG00000114361 ENSMUST00000224924 Gm31104 processed_pseudogene Interval_45691 chr13 56994988 56995457 + 0 NA Intergenic Intergenic -64274 ENSMUSG00000077279.1 ENSMUSG00000077279 ENSMUST00000104091 Gm22777 snoRNA Interval_36907 chr12 55271913 55272985 + 0 NA Intergenic Intergenic -2932 ENSMUSG00000112368.1 ENSMUSG00000112368 ENSMUST00000217756 Gm49376 unprocessed_pseudogene Interval_46279 chr13 63330159 63331626 + 0 NA exon (ENSMUSG00000021461.17, exon 9 of 9) protein_coding-exon (ENSMUSG00000021461.17, exon 9 of 9) 1336 ENSMUSG00000089854.2 ENSMUSG00000089854 ENSMUST00000160065 Gm16133 antisense Interval_159763 chr8 101710784 101711385 + 0 NA Intergenic Intergenic -171376 ENSMUSG00000087985.1 ENSMUSG00000087985 ENSMUST00000157360 Gm22223 snoRNA Interval_62068 chr15 86196141 86196574 + 0 NA Intergenic Intergenic 10629 ENSMUSG00000086424.1 ENSMUSG00000086424 ENSMUST00000133675 Gm15569 antisense Interval_39964 chr12 100131590 100132187 + 0 NA intron (ENSMUSG00000021179.8, intron 10 of 13) protein_coding-intron (ENSMUSG00000021179.8, intron 10 of 13) -2116 ENSMUSG00000021179.8 ENSMUSG00000021179 ENSMUST00000221954 Nrde2 protein_coding Interval_168147 chr9 77524011 77524272 + 0 NA intron (ENSMUSG00000032352.16, intron 1 of 13) protein_coding-intron (ENSMUSG00000032352.16, intron 1 of 13) 20707 ENSMUSG00000032352.16 ENSMUSG00000032352 ENSMUST00000183980 Lrrc1 protein_coding Interval_154702 chr8 22701180 22701798 + 0 NA TTS (ENSMUSG00000031537.15) protein_coding-TTS (ENSMUSG00000031537.15) 5051 ENSMUSG00000031537.15 ENSMUSG00000031537 ENSMUST00000150214 Ikbkb protein_coding Interval_29802 chr11 86937099 86938794 + 0 NA exon (ENSMUSG00000018427.8, exon 5 of 5) protein_coding-exon (ENSMUSG00000018427.8, exon 5 of 5) 34078 ENSMUSG00000018427.8 ENSMUSG00000018427 ENSMUST00000238921 Ypel2 protein_coding Interval_58915 chr15 39981256 39982384 + 0 NA Intergenic Intergenic 9844 ENSMUSG00000115152.1 ENSMUSG00000115152 ENSMUST00000226734 Gm49253 processed_pseudogene Interval_94961 chr2 102185567 102186697 + 0 NA intron (ENSMUSG00000048058.17, intron 1 of 5) protein_coding-intron (ENSMUSG00000048058.17, intron 1 of 5) 11842 ENSMUSG00000082328.1 ENSMUSG00000082328 ENSMUST00000119411 Gm13921 processed_pseudogene Interval_15014 chr10 41926813 41927071 + 0 NA exon (ENSMUSG00000071324.11, exon 13 of 18) protein_coding-exon (ENSMUSG00000071324.11, exon 13 of 18) 28569 ENSMUSG00000038332.13 ENSMUSG00000038332 ENSMUST00000214835 Sesn1 protein_coding Interval_136090 chr6 50744947 50745205 + 0 NA Intergenic Intergenic 2736 ENSMUSG00000107672.1 ENSMUSG00000107672 ENSMUST00000203603 Gm3017 processed_pseudogene Interval_10457 chr1 171006867 171007245 + 0 NA Intergenic Intergenic -11864 ENSMUSG00000059089.4 ENSMUSG00000059089 ENSMUST00000078825 Fcgr4 protein_coding Interval_170980 chr9 113472502 113472789 + 0 NA Intergenic Intergenic 35710 ENSMUSG00000109890.2 ENSMUSG00000109890 ENSMUST00000209716 AU023762 lincRNA Interval_144912 chr7 28893801 28894334 + 0 NA TTS (ENSMUSG00000054083.8) protein_coding-TTS (ENSMUSG00000054083.8) 3115 ENSMUSG00000054083.8 ENSMUSG00000054083 ENSMUST00000208299 Capn12 protein_coding Interval_107207 chr3 104616247 104616776 + 0 NA Intergenic Intergenic -15272 ENSMUSG00000084653.1 ENSMUSG00000084653 ENSMUST00000122704 Gm26091 snRNA Interval_44438 chr13 44846903 44847297 + 0 NA intron (ENSMUSG00000038518.15, intron 1 of 3) protein_coding-intron (ENSMUSG00000038518.15, intron 3 of 18) -8817 ENSMUSG00000088189.1 ENSMUSG00000088189 ENSMUST00000157564 Gm22213 snoRNA Interval_170614 chr9 109533579 109533839 + 0 NA intron (ENSMUSG00000104572.5, intron 1 of 7) transcribed_unprocessed_pseudogene-intron (ENSMUSG00000104572.5, intron 1 of 2) 335 ENSMUSG00000104572.5 ENSMUSG00000104572 ENSMUST00000198015 Fbxw23 transcribed_unprocessed_pseudogene Interval_10033 chr1 165245842 165246892 + 0 NA Intergenic Intergenic -9854 ENSMUSG00000040843.10 ENSMUSG00000040843 ENSMUST00000156102 Tiprl protein_coding Interval_20423 chr10 117464640 117465075 + 0 NA Intergenic Intergenic -17364 ENSMUSG00000112344.1 ENSMUSG00000112344 ENSMUST00000220189 Gm32141 lincRNA Interval_31173 chr11 98709384 98711124 + 0 NA TTS (ENSMUSG00000088169.1) snoRNA-TTS (ENSMUSG00000088169.1) 835 ENSMUSG00000088169.1 ENSMUSG00000088169 ENSMUST00000157544 Gm22059 snoRNA Interval_107280 chr3 105403054 105404041 + 0 NA Intergenic Intergenic 48180 ENSMUSG00000074346.6 ENSMUSG00000074346 ENSMUST00000130683 Kcnd3os antisense Interval_424 chr1 5143160 5143378 + 0 NA intron (ENSMUSG00000033793.12, intron 10 of 10) protein_coding-intron (ENSMUSG00000033793.12, intron 11 of 13) 60137 ENSMUSG00000033793.12 ENSMUSG00000033793 ENSMUST00000192142 Atp6v1h protein_coding Interval_14590 chr10 36774538 36774982 + 0 NA intron (ENSMUSG00000044499.11, intron 3 of 4) protein_coding-intron (ENSMUSG00000044499.11, intron 4 of 5) 1171 ENSMUSG00000088423.1 ENSMUSG00000088423 ENSMUST00000157798 Gm22554 snoRNA Interval_39216 chr12 85921537 85921764 + 0 NA intron (ENSMUSG00000012609.19, intron 2 of 15) protein_coding-intron (ENSMUSG00000012609.19, intron 21 of 33) -40351 ENSMUSG00000012609.19 ENSMUSG00000012609 ENSMUST00000220906 Ttll5 protein_coding Interval_94339 chr2 89824425 89824632 + 0 NA TTS (ENSMUSG00000075073.3) protein_coding-TTS (ENSMUSG00000075073.3) 12477 ENSMUSG00000045148.5 ENSMUSG00000045148 ENSMUST00000057369 Olfr1255 protein_coding Interval_26470 chr11 58038981 58039530 + 0 NA intron (ENSMUSG00000037331.15, intron 1 of 18) protein_coding-intron (ENSMUSG00000037331.15, intron 1 of 18) 30191 ENSMUSG00000037331.15 ENSMUSG00000037331 ENSMUST00000140500 Larp1 protein_coding Interval_16163 chr10 61154510 61154686 + 0 NA Intergenic Intergenic -6895 ENSMUSG00000020097.14 ENSMUSG00000020097 ENSMUST00000124896 Sgpl1 protein_coding Interval_62921 chr15 97929438 97929866 + 0 NA Intergenic Intergenic -5633 ENSMUSG00000089233.1 ENSMUSG00000089233 ENSMUST00000158608 Gm22202 misc_RNA Interval_156587 chr8 53591415 53592016 + 0 NA promoter-TSS (ENSMUSG00000039396.11) protein_coding-promoter-TSS (ENSMUSG00000039396.11) -110 ENSMUSG00000039396.11 ENSMUSG00000039396 ENSMUST00000135443 Neil3 protein_coding Interval_39660 chr12 91843974 91844184 + 0 NA intron (ENSMUSG00000020964.14, intron 1 of 20) protein_coding-intron (ENSMUSG00000020964.14, intron 1 of 20) 5078 ENSMUSG00000020964.14 ENSMUSG00000020964 ENSMUST00000169843 Sel1l protein_coding Interval_99177 chr2 157788277 157788495 + 0 NA promoter-TSS (ENSMUSG00000027649.15) protein_coding-promoter-TSS (ENSMUSG00000027649.15) -1478 ENSMUSG00000027649.15 ENSMUSG00000027649 ENSMUST00000156300 Ctnnbl1 protein_coding Interval_64455 chr16 11517640 11517877 + 0 NA intron (ENSMUSG00000071669.14, intron 14 of 20) protein_coding-intron (ENSMUSG00000071669.14, intron 7 of 13) -21452 ENSMUSG00000082653.1 ENSMUSG00000082653 ENSMUST00000117770 Gm15897 processed_pseudogene Interval_132670 chr5 147056721 147056961 + 0 NA intron (ENSMUSG00000016520.7, intron 1 of 9) protein_coding-intron (ENSMUSG00000016520.7, intron 1 of 9) -20723 ENSMUSG00000029642.11 ENSMUSG00000029642 ENSMUST00000196288 Polr1d protein_coding Interval_150656 chr7 113125839 113126219 + 0 NA intron (ENSMUSG00000110009.1, intron 2 of 5) lincRNA-intron (ENSMUSG00000110009.1, intron 2 of 4) 6331 ENSMUSG00000088671.1 ENSMUSG00000088671 ENSMUST00000158046 Gm23662 rRNA Interval_111804 chr4 30326537 30326862 + 0 NA Intergenic Intergenic -105413 ENSMUSG00000087180.1 ENSMUSG00000087180 ENSMUST00000152306 Gm11924 lincRNA Interval_173679 chrX 101848931 101850654 + 0 NA exon (ENSMUSG00000079481.11, exon 1 of 8) protein_coding-exon (ENSMUSG00000079481.11, exon 1 of 8) 25277 ENSMUSG00000082284.1 ENSMUSG00000082284 ENSMUST00000119546 H3f3a-ps1 processed_pseudogene Interval_32328 chr11 106985317 106988461 + 0 NA Intergenic Intergenic 5738 ENSMUSG00000018362.14 ENSMUSG00000018362 ENSMUST00000106768 Kpna2 protein_coding Interval_152573 chr7 134709190 134710271 + 0 NA intron (ENSMUSG00000058325.6, intron 1 of 18) protein_coding-intron (ENSMUSG00000058325.6, intron 1 of 51) 39043 ENSMUSG00000058325.6 ENSMUSG00000058325 ENSMUST00000210121 Dock1 protein_coding Interval_149792 chr7 101538157 101538753 + 0 NA promoter-TSS (ENSMUSG00000110301.1) lincRNA-promoter-TSS (ENSMUSG00000110301.1) -125 ENSMUSG00000110301.1 ENSMUSG00000110301 ENSMUST00000209330 Gm35363 lincRNA Interval_34084 chr11 120413669 120414987 + 0 NA intron (ENSMUSG00000039703.15, intron 1 of 1) protein_coding-intron (ENSMUSG00000039703.15, intron 7 of 16) -28343 ENSMUSG00000039691.10 ENSMUSG00000039691 ENSMUST00000143192 Tspan10 protein_coding Interval_24294 chr11 32152736 32153040 + 0 NA Intergenic Intergenic -32117 ENSMUSG00000081613.1 ENSMUSG00000081613 ENSMUST00000121140 Gm12109 processed_pseudogene Interval_137399 chr6 71924926 71926075 + 0 NA promoter-TSS (ENSMUSG00000049553.11) protein_coding-promoter-TSS (ENSMUSG00000049553.11) -5656 ENSMUSG00000108305.1 ENSMUSG00000108305 ENSMUST00000206311 Gm19078 processed_pseudogene Interval_59499 chr15 54634650 54635039 + 0 NA Intergenic Intergenic 63652 ENSMUSG00000024479.3 ENSMUSG00000024479 ENSMUST00000025356 Mal2 protein_coding Interval_156093 chr8 44233659 44234825 + 0 NA Intergenic Intergenic -5697 ENSMUSG00000102378.1 ENSMUSG00000102378 ENSMUST00000193497 Gm37972 TEC Interval_45649 chr13 56554154 56555493 + 0 NA Intergenic Intergenic -6414 ENSMUSG00000021539.9 ENSMUSG00000021539 ENSMUST00000225183 Lect2 protein_coding Interval_46120 chr13 61846046 61846440 + 0 NA intron (ENSMUSG00000113626.1, intron 1 of 2) transcribed_processed_pseudogene-intron (ENSMUSG00000113626.1, intron 1 of 2) -22579 ENSMUSG00000080451.1 ENSMUSG00000080451 ENSMUST00000116801 Gm24193 miRNA Interval_62683 chr15 96250869 96251158 + 0 NA TTS (ENSMUSG00000097619.8) processed_transcript-TTS (ENSMUSG00000097619.8) 2974 ENSMUSG00000097619.8 ENSMUSG00000097619 ENSMUST00000229950 4833422M21Rik processed_transcript Interval_82771 chr18 76987789 76988534 + 0 NA intron (ENSMUSG00000025420.13, intron 6 of 7) protein_coding-intron (ENSMUSG00000025420.13, intron 14 of 16) 43777 ENSMUSG00000025421.15 ENSMUSG00000025421 ENSMUST00000148955 Hdhd2 protein_coding Interval_74268 chr17 47803799 47804109 + 0 NA Intergenic Intergenic 16044 ENSMUSG00000023990.18 ENSMUSG00000023990 ENSMUST00000140715 Tfeb protein_coding Interval_154515 chr8 18852540 18853655 + 0 NA intron (ENSMUSG00000031467.10, intron 1 of 7) protein_coding-intron (ENSMUSG00000031467.10, intron 1 of 7) 6820 ENSMUSG00000031467.10 ENSMUSG00000031467 ENSMUST00000033847 Agpat5 protein_coding Interval_83249 chr18 82991413 82991667 + 0 NA intron (ENSMUSG00000058881.13, intron 1 of 2) protein_coding-intron (ENSMUSG00000058881.13, intron 3 of 5) -20363 ENSMUSG00000118094.1 ENSMUSG00000118094 ENSMUST00000236941 AC142100.1 processed_transcript Interval_168717 chr9 86280545 86281766 + 0 NA Intergenic Intergenic 35529 ENSMUSG00000083731.1 ENSMUSG00000083731 ENSMUST00000117532 Gm16202 processed_pseudogene Interval_98044 chr2 147136135 147136325 + 0 NA Intergenic Intergenic 10982 ENSMUSG00000082158.1 ENSMUSG00000082158 ENSMUST00000117733 Gm14116 processed_pseudogene Interval_51585 chr14 30526436 30526708 + 0 NA exon (ENSMUSG00000021962.9, exon 10 of 10) protein_coding-exon (ENSMUSG00000021962.9, exon 10 of 10) 2865 ENSMUSG00000021962.9 ENSMUSG00000021962 ENSMUST00000225934 Dcp1a protein_coding Interval_118760 chr4 133577615 133578469 + 0 NA exon (ENSMUSG00000028850.2, exon 2 of 7) protein_coding-exon (ENSMUSG00000028850.2, exon 2 of 7) -1662 ENSMUSG00000028850.2 ENSMUSG00000028850 ENSMUST00000154648 Gpatch3 protein_coding Interval_56003 chr14 103996454 103996883 + 0 NA intron (ENSMUSG00000115727.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000115727.1, intron 1 of 2) 30474 ENSMUSG00000115727.1 ENSMUSG00000115727 ENSMUST00000227414 4930432J09Rik lincRNA Interval_110445 chr3 158238012 158238274 + 0 NA intron (ENSMUSG00000028176.13, intron 8 of 24) protein_coding-intron (ENSMUSG00000028176.13, intron 9 of 27) 31274 ENSMUSG00000104647.1 ENSMUSG00000104647 ENSMUST00000199292 Gm43485 TEC Interval_123874 chr5 36204075 36204478 + 0 NA exon (ENSMUSG00000043430.5, exon 1 of 1) protein_coding-exon (ENSMUSG00000043430.5, exon 1 of 1) 255 ENSMUSG00000043430.5 ENSMUSG00000043430 ENSMUST00000052224 Psapl1 protein_coding Interval_87015 chr19 45552807 45553187 + 0 NA exon (ENSMUSG00000025218.6, exon 9 of 9) protein_coding-exon (ENSMUSG00000025218.6, exon 9 of 9) 7534 ENSMUSG00000025218.6 ENSMUSG00000025218 ENSMUST00000026239 Poll protein_coding Interval_96737 chr2 127584274 127585058 + 0 NA promoter-TSS (ENSMUSG00000034800.15) protein_coding-promoter-TSS (ENSMUSG00000034800.15) -3158 ENSMUSG00000034800.15 ENSMUSG00000034800 ENSMUST00000164551 Zfp661 protein_coding Interval_50820 chr14 20023892 20024140 + 0 NA Intergenic Intergenic 34281 ENSMUSG00000114498.1 ENSMUSG00000114498 ENSMUST00000224881 Gm48339 processed_pseudogene Interval_4554 chr1 74977284 74978167 + 0 NA intron (ENSMUSG00000026162.7, intron 2 of 4) protein_coding-intron (ENSMUSG00000026162.7, intron 2 of 4) 23473 ENSMUSG00000103145.1 ENSMUSG00000103145 ENSMUST00000194616 Gm37744 TEC Interval_7147 chr1 127221268 127221706 + 0 NA intron (ENSMUSG00000036155.13, intron 1 of 7) protein_coding-intron (ENSMUSG00000036155.13, intron 1 of 17) 16459 ENSMUSG00000036155.13 ENSMUSG00000036155 ENSMUST00000171405 Mgat5 protein_coding Interval_89667 chr2 24388734 24389016 + 0 NA intron (ENSMUSG00000026979.16, intron 1 of 16) protein_coding-intron (ENSMUSG00000026979.16, intron 1 of 16) 2258 ENSMUSG00000026979.16 ENSMUSG00000026979 ENSMUST00000132924 Psd4 protein_coding Interval_73924 chr17 45514669 45517166 + 0 NA exon (ENSMUSG00000023938.8, exon 1 of 11) protein_coding-exon (ENSMUSG00000023938.8, exon 1 of 11) 1688 ENSMUSG00000023938.8 ENSMUSG00000023938 ENSMUST00000232693 Aars2 protein_coding Interval_86305 chr19 38526585 38527844 + 0 NA intron (ENSMUSG00000024998.17, intron 2 of 32) protein_coding-intron (ENSMUSG00000024998.17, intron 1 of 31) -54012 ENSMUSG00000088940.1 ENSMUSG00000088940 ENSMUST00000158315 Gm24930 misc_RNA Interval_148389 chr7 80969816 80970648 + 0 NA Intergenic Intergenic -9661 ENSMUSG00000109367.1 ENSMUSG00000109367 ENSMUST00000209023 Gm18782 processed_pseudogene Interval_79715 chr18 34690426 34691033 + 0 NA intron (ENSMUSG00000024366.8, intron 7 of 7) protein_coding-intron (ENSMUSG00000024366.8, intron 7 of 7) 29658 ENSMUSG00000024366.8 ENSMUSG00000024366 ENSMUST00000025224 Gfra3 protein_coding Interval_11037 chr1 178617379 178617593 + 0 NA intron (ENSMUSG00000026494.12, intron 2 of 3) protein_coding-intron (ENSMUSG00000026494.12, intron 2 of 14) -19419 ENSMUSG00000064967.1 ENSMUSG00000064967 ENSMUST00000083033 Gm24405 snRNA Interval_155228 chr8 28277812 28278056 + 0 NA Intergenic Intergenic 92094 ENSMUSG00000098056.1 ENSMUSG00000098056 ENSMUST00000182906 Gm8100 processed_pseudogene Interval_25809 chr11 51857965 51859209 + 0 NA promoter-TSS (ENSMUSG00000020387.15) protein_coding-promoter-TSS (ENSMUSG00000020387.15) -1462 ENSMUSG00000020387.15 ENSMUSG00000020387 ENSMUST00000151277 Jade2 protein_coding Interval_115722 chr4 103018721 103019250 + 0 NA intron (ENSMUSG00000066090.5, intron 2 of 2) protein_coding-intron (ENSMUSG00000066090.5, intron 1 of 1) -7020 ENSMUSG00000085041.1 ENSMUSG00000085041 ENSMUST00000148892 BB031773 antisense Interval_50107 chr14 8040310 8041327 + 0 NA intron (ENSMUSG00000025277.14, intron 2 of 7) protein_coding-intron (ENSMUSG00000025277.14, intron 3 of 8) 37899 ENSMUSG00000025277.14 ENSMUSG00000025277 ENSMUST00000026313 Abhd6 protein_coding Interval_125070 chr5 64242961 64244493 + 0 NA intron (ENSMUSG00000029174.18, intron 1 of 18) protein_coding-intron (ENSMUSG00000029174.18, intron 2 of 21) 9498 ENSMUSG00000081143.2 ENSMUSG00000081143 ENSMUST00000064305 Gm15823 processed_pseudogene Interval_22410 chr11 9791093 9791718 + 0 NA Intergenic Intergenic -53784 ENSMUSG00000081629.1 ENSMUSG00000081629 ENSMUST00000117907 Eif3s6-ps1 processed_pseudogene Interval_46364 chr13 64215509 64216702 + 0 NA intron (ENSMUSG00000033102.15, intron 8 of 14) protein_coding-intron (ENSMUSG00000033102.15, intron 8 of 13) -3823 ENSMUSG00000033102.15 ENSMUSG00000033102 ENSMUST00000221437 Cdc14b protein_coding Interval_2257 chr1 37429342 37430667 + 0 NA promoter-TSS (ENSMUSG00000026111.15) protein_coding-promoter-TSS (ENSMUSG00000026111.15) -4 ENSMUSG00000026112.7 ENSMUSG00000026112 ENSMUST00000192179 Coa5 protein_coding Interval_159950 chr8 105363808 105365063 + 0 NA intron (ENSMUSG00000014786.8, intron 9 of 10) protein_coding-intron (ENSMUSG00000014786.8, intron 14 of 15) 8973 ENSMUSG00000014786.8 ENSMUSG00000014786 ENSMUST00000212772 Slc9a5 protein_coding Interval_2345 chr1 38217946 38218619 + 0 NA exon (ENSMUSG00000037138.18, exon 12 of 23) protein_coding-exon (ENSMUSG00000037138.18, exon 12 of 23) -21418 ENSMUSG00000085391.1 ENSMUSG00000085391 ENSMUST00000133299 Gm16150 antisense Interval_144888 chr7 28772991 28773680 + 0 NA intron (ENSMUSG00000015149.14, intron 3 of 14) protein_coding-intron (ENSMUSG00000015149.14, intron 4 of 15) -2369 ENSMUSG00000015149.14 ENSMUSG00000015149 ENSMUST00000128961 Sirt2 protein_coding Interval_64705 chr16 14361069 14362538 + 0 NA exon (ENSMUSG00000023088.17, exon 1 of 1) protein_coding-exon (ENSMUSG00000023088.17, exon 1 of 1) 236 ENSMUSG00000023088.17 ENSMUSG00000023088 ENSMUST00000146032 Abcc1 protein_coding Interval_101227 chr2 179641045 179641419 + 0 NA intron (ENSMUSG00000000305.12, intron 2 of 2) protein_coding-intron (ENSMUSG00000000305.12, intron 2 of 15) -27665 ENSMUSG00000083410.1 ENSMUSG00000083410 ENSMUST00000120800 Gm14300 processed_pseudogene Interval_28723 chr11 77930612 77931920 + 0 NA intron (ENSMUSG00000000632.13, intron 1 of 15) protein_coding-intron (ENSMUSG00000000632.13, intron 1 of 15) 227 ENSMUSG00000000632.13 ENSMUSG00000000632 ENSMUST00000126866 Sez6 protein_coding Interval_119971 chr4 141165557 141167391 + 0 NA intron (ENSMUSG00000028920.9, intron 1 of 3) protein_coding-intron (ENSMUSG00000028920.9, intron 1 of 9) 18552 ENSMUSG00000028920.9 ENSMUSG00000028920 ENSMUST00000146768 Fbxo42 protein_coding Interval_91891 chr2 51056193 51057104 + 0 NA Intergenic Intergenic 92462 ENSMUSG00000017144.8 ENSMUSG00000017144 ENSMUST00000140864 Rnd3 protein_coding Interval_123586 chr5 33638770 33638981 + 0 NA intron (ENSMUSG00000004642.13, intron 7 of 7) protein_coding-intron (ENSMUSG00000004642.13, intron 7 of 7) 8950 ENSMUSG00000097271.1 ENSMUSG00000097271 ENSMUST00000181102 Gm9903 protein_coding Interval_101911 chr3 11083052 11084090 + 0 NA Intergenic Intergenic -39213 ENSMUSG00000081537.2 ENSMUSG00000081537 ENSMUST00000118935 Gm37832 processed_pseudogene Interval_122440 chr5 22665907 22666369 + 0 NA intron (ENSMUSG00000097207.7, intron 4 of 5) lincRNA-intron (ENSMUSG00000097207.7, intron 3 of 4) -20955 ENSMUSG00000092704.1 ENSMUSG00000092704 ENSMUST00000174963 Gm24512 snRNA Interval_8553 chr1 141797571 141798094 + 0 NA Intergenic Intergenic 251626 ENSMUSG00000103858.1 ENSMUSG00000103858 ENSMUST00000191749 Gm37604 TEC Interval_120617 chr4 149714205 149714421 + 0 NA Intergenic Intergenic 23457 ENSMUSG00000044700.15 ENSMUSG00000044700 ENSMUST00000145405 Tmem201 protein_coding Interval_102360 chr3 22162186 22163263 + 0 NA intron (ENSMUSG00000027630.13, intron 2 of 2) protein_coding-intron (ENSMUSG00000027630.13, intron 2 of 15) -81609 ENSMUSG00000103293.1 ENSMUSG00000103293 ENSMUST00000195073 Gm5842 processed_pseudogene Interval_166415 chr9 59274661 59275645 + 0 NA Intergenic Intergenic -16405 ENSMUSG00000025236.11 ENSMUSG00000025236 ENSMUST00000215994 Adpgk protein_coding Interval_58972 chr15 41173545 41174653 + 0 NA TTS (ENSMUSG00000048559.5) processed_pseudogene-TTS (ENSMUSG00000048559.5) 612 ENSMUSG00000048559.5 ENSMUSG00000048559 ENSMUST00000060066 4930555K19Rik processed_pseudogene Interval_74720 chr17 56141537 56142290 + 0 NA Intergenic Intergenic -8070 ENSMUSG00000001227.12 ENSMUSG00000001227 ENSMUST00000167545 Sema6b protein_coding Interval_37252 chr12 63032008 63032457 + 0 NA Intergenic Intergenic 40912 ENSMUSG00000058933.5 ENSMUSG00000058933 ENSMUST00000080271 Gm5185 processed_pseudogene Interval_39699 chr12 93445121 93445327 + 0 NA promoter-TSS (ENSMUSG00000113164.1) lincRNA-promoter-TSS (ENSMUSG00000113164.1) -401 ENSMUSG00000113164.1 ENSMUSG00000113164 ENSMUST00000223202 4930559C10Rik lincRNA Interval_49982 chr13 119283210 119283812 + 0 NA Intergenic Intergenic -3966 ENSMUSG00000114736.1 ENSMUSG00000114736 ENSMUST00000223952 Gm47336 lincRNA Interval_104424 chr3 65527698 65529756 + 0 NA promoter-TSS (ENSMUSG00000074580.11) transcribed_processed_pseudogene-promoter-TSS (ENSMUSG00000074580.11) 3026 ENSMUSG00000087825.1 ENSMUSG00000087825 ENSMUST00000157200 Gm22279 snRNA Interval_170538 chr9 108586124 108588420 + 0 NA intron (ENSMUSG00000115688.1, intron 1 of 3) protein_coding-intron (ENSMUSG00000006675.10, intron 2 of 8) 220 ENSMUSG00000115688.1 ENSMUSG00000115688 ENSMUST00000227071 Gm49209 unitary_pseudogene Interval_103075 chr3 35061652 35061898 + 0 NA Intergenic Intergenic -139124 ENSMUSG00000098862.1 ENSMUSG00000098862 ENSMUST00000183357 Mir6378 miRNA Interval_89163 chr2 17741168 17743384 + 0 NA Intergenic Intergenic 55708 ENSMUSG00000081851.1 ENSMUSG00000081851 ENSMUST00000120245 Gm13323 processed_pseudogene Interval_83476 chr18 86473593 86474075 + 0 NA promoter-TSS (ENSMUSG00000117778.1) antisense-promoter-TSS (ENSMUSG00000117778.1) 95 ENSMUSG00000117778.1 ENSMUSG00000117778 ENSMUST00000236142 Gm50384 antisense Interval_146426 chr7 45819466 45820407 + 0 NA exon (ENSMUSG00000058743.6, exon 2 of 3) protein_coding-exon (ENSMUSG00000058743.6, exon 2 of 3) 3408 ENSMUSG00000058743.6 ENSMUSG00000058743 ENSMUST00000210232 Kcnj14 protein_coding Interval_71303 chr17 22035558 22037466 + 0 NA intron (ENSMUSG00000053347.15, intron 5 of 5) protein_coding-intron (ENSMUSG00000053347.15, intron 5 of 5) 4027 ENSMUSG00000092147.1 ENSMUSG00000092147 ENSMUST00000167568 Gm7052 unprocessed_pseudogene Interval_93504 chr2 73592069 73592750 + 0 NA Intergenic Intergenic -4415 ENSMUSG00000086544.1 ENSMUSG00000086544 ENSMUST00000149231 Chn1os3 antisense Interval_136679 chr6 57570281 57571019 + 0 NA intron (ENSMUSG00000108112.1, intron 3 of 13) processed_transcript-intron (ENSMUSG00000108112.1, intron 3 of 13) 4857 ENSMUSG00000092903.2 ENSMUSG00000092903 ENSMUST00000175162 Gm27896 misc_RNA Interval_47949 chr13 94565398 94565594 + 0 NA intron (ENSMUSG00000021686.6, intron 4 of 4) protein_coding-intron (ENSMUSG00000021686.6, intron 26 of 26) 48334 ENSMUSG00000084423.1 ENSMUSG00000084423 ENSMUST00000122474 Gm25109 miRNA Interval_11203 chr1 180141504 180141885 + 0 NA intron (ENSMUSG00000026490.18, intron 29 of 37) protein_coding-intron (ENSMUSG00000026490.18, intron 26 of 34) 6457 ENSMUSG00000103636.1 ENSMUSG00000103636 ENSMUST00000195719 Gm38331 TEC Interval_158093 chr8 78671205 78672600 + 0 NA intron (ENSMUSG00000031684.11, intron 6 of 10) protein_coding-intron (ENSMUSG00000031684.11, intron 6 of 11) 67608 ENSMUSG00000110244.1 ENSMUSG00000110244 ENSMUST00000211775 Gm2253 processed_pseudogene Interval_107858 chr3 116333388 116333638 + 0 NA intron (ENSMUSG00000033502.15, intron 7 of 14) protein_coding-intron (ENSMUSG00000033502.15, intron 7 of 15) -16590 ENSMUSG00000106005.1 ENSMUSG00000106005 ENSMUST00000196669 Gm29151 antisense Interval_81290 chr18 57470637 57471855 + 0 NA intron (ENSMUSG00000069372.3, intron 1 of 1) protein_coding-intron (ENSMUSG00000069372.3, intron 1 of 1) -1207 ENSMUSG00000069372.3 ENSMUSG00000069372 ENSMUST00000209786 Ctxn3 protein_coding Interval_53355 chr14 56582487 56582767 + 0 NA intron (ENSMUSG00000054509.7, intron 1 of 34) protein_coding-intron (ENSMUSG00000054509.7, intron 1 of 34) -30142 ENSMUSG00000064128.8 ENSMUSG00000064128 ENSMUST00000224748 Cenpj protein_coding Interval_65031 chr16 18586428 18587060 + 0 NA exon (ENSMUSG00000009097.10, exon 3 of 9) protein_coding-exon (ENSMUSG00000009097.10, exon 3 of 9) 2064 ENSMUSG00000009097.10 ENSMUSG00000009097 ENSMUST00000232589 Tbx1 protein_coding Interval_86283 chr19 38383041 38384155 + 0 NA TTS (ENSMUSG00000117920.1) processed_pseudogene-TTS (ENSMUSG00000117920.1) 1916 ENSMUSG00000117920.1 ENSMUSG00000117920 ENSMUST00000235935 Gm50155 processed_pseudogene Interval_53008 chr14 53425280 53425479 + 0 NA Intergenic Intergenic -4694 ENSMUSG00000094220.5 ENSMUSG00000094220 ENSMUST00000183604 Trav6-3 TR_V_gene Interval_88259 chr19 61283665 61285771 + 0 NA Intergenic Intergenic 12351 ENSMUSG00000095993.1 ENSMUSG00000095993 ENSMUST00000179346 Gm21060 protein_coding Interval_65540 chr16 23158423 23159131 + 0 NA TTS (ENSMUSG00000022878.5) protein_coding-TTS (ENSMUSG00000022878.5) 12131 ENSMUSG00000022878.5 ENSMUSG00000022878 ENSMUST00000171309 Adipoq protein_coding Interval_10786 chr1 174756130 174756892 + 0 NA intron (ENSMUSG00000028354.13, intron 3 of 5) protein_coding-intron (ENSMUSG00000028354.13, intron 15 of 17) 146702 ENSMUSG00000028354.13 ENSMUSG00000028354 ENSMUST00000193905 Fmn2 protein_coding Interval_88344 chr2 4163048 4163271 + 0 NA intron (ENSMUSG00000026657.17, intron 1 of 22) protein_coding-intron (ENSMUSG00000026657.17, intron 1 of 22) -14951 ENSMUSG00000102136.1 ENSMUSG00000102136 ENSMUST00000195326 Gm37107 sense_intronic Interval_52211 chr14 40663662 40664317 + 0 NA Intergenic Intergenic -83238 ENSMUSG00000114933.1 ENSMUSG00000114933 ENSMUST00000225171 Gm48040 processed_pseudogene Interval_155317 chr8 31211425 31211940 + 0 NA intron (ENSMUSG00000046152.16, intron 3 of 3) protein_coding-intron (ENSMUSG00000046152.16, intron 3 of 4) 3669 ENSMUSG00000083588.1 ENSMUSG00000083588 ENSMUST00000120464 Gm8051 processed_pseudogene Interval_145833 chr7 39832918 39833281 + 0 NA intron (ENSMUSG00000102085.2, intron 3 of 3) lincRNA-intron (ENSMUSG00000102085.2, intron 3 of 3) -35357 ENSMUSG00000100431.2 ENSMUSG00000100431 ENSMUST00000187626 4930558N11Rik lincRNA Interval_80278 chr18 38742545 38742771 + 0 NA intron (ENSMUSG00000118257.1, intron 2 of 2) lincRNA-intron (ENSMUSG00000118257.1, intron 3 of 3) -24530 ENSMUSG00000083766.1 ENSMUSG00000083766 ENSMUST00000122442 Gm15335 processed_pseudogene Interval_10468 chr1 171159290 171160291 + 0 NA promoter-TSS (ENSMUSG00000056569.11) protein_coding-promoter-TSS (ENSMUSG00000056569.11) 9077 ENSMUSG00000056569.11 ENSMUSG00000056569 ENSMUST00000125565 Mpz protein_coding Interval_170450 chr9 108052590 108054573 + 0 NA promoter-TSS (ENSMUSG00000041528.15) protein_coding-promoter-TSS (ENSMUSG00000041528.15) 422 ENSMUSG00000032593.5 ENSMUSG00000032593 ENSMUST00000085060 Amigo3 protein_coding Interval_78407 chr18 12558963 12561514 + 0 NA intron (ENSMUSG00000024421.16, intron 29 of 37) protein_coding-intron (ENSMUSG00000024421.16, intron 66 of 74) 18299 ENSMUSG00000088342.1 ENSMUSG00000088342 ENSMUST00000157717 Gm22340 rRNA Interval_151027 chr7 117917636 117917938 + 0 NA Intergenic Intergenic 140993 ENSMUSG00000088116.1 ENSMUSG00000088116 ENSMUST00000157491 Gm24063 miRNA Interval_164863 chr9 42550087 42550682 + 0 NA intron (ENSMUSG00000032017.14, intron 15 of 20) protein_coding-intron (ENSMUSG00000032017.14, intron 13 of 18) -29553 ENSMUSG00000093745.1 ENSMUSG00000093745 ENSMUST00000176676 Gm24420 misc_RNA Interval_51317 chr14 26375847 26376035 + 0 NA exon (ENSMUSG00000089978.1, exon 1 of 1) processed_pseudogene-exon (ENSMUSG00000089978.1, exon 1 of 1) 231 ENSMUSG00000089978.1 ENSMUSG00000089978 ENSMUST00000160441 Crb1-ps processed_pseudogene Interval_102899 chr3 32647802 32649046 + 0 NA Intergenic Intergenic -31945 ENSMUSG00000027669.14 ENSMUSG00000027669 ENSMUST00000143588 Gnb4 protein_coding Interval_50095 chr14 7951924 7955013 + 0 NA Intergenic Intergenic -3820 ENSMUSG00000109649.1 ENSMUSG00000109649 ENSMUST00000211339 Gm45521 protein_coding Interval_53293 chr14 55838877 55839408 + 0 NA Intergenic Intergenic 9673 ENSMUSG00000023411.12 ENSMUSG00000023411 ENSMUST00000226869 Nfatc4 protein_coding Interval_107689 chr3 111072003 111072315 + 0 NA Intergenic Intergenic -36341 ENSMUSG00000106487.1 ENSMUSG00000106487 ENSMUST00000199816 Gm43407 processed_pseudogene Interval_41063 chr12 110888686 110889870 + 0 NA promoter-TSS (ENSMUSG00000021276.10) protein_coding-promoter-TSS (ENSMUSG00000021276.10) 2 ENSMUSG00000021275.16 ENSMUSG00000021275 ENSMUST00000221605 Tecpr2 protein_coding Interval_119106 chr4 135596334 135596530 + 0 NA Intergenic Intergenic 12684 ENSMUSG00000088179.1 ENSMUSG00000088179 ENSMUST00000157554 Gm23106 snRNA Interval_139001 chr6 94155092 94155415 + 0 NA intron (ENSMUSG00000045095.16, intron 2 of 2) protein_coding-intron (ENSMUSG00000045095.16, intron 1 of 21) 168781 ENSMUSG00000107545.1 ENSMUSG00000107545 ENSMUST00000204466 Gm44307 processed_pseudogene Interval_54677 chr14 73194490 73194914 + 0 NA TTS (ENSMUSG00000022105.6) protein_coding-TTS (ENSMUSG00000022105.6) -7381 ENSMUSG00000090706.1 ENSMUSG00000090706 ENSMUST00000168470 Gm17233 antisense Interval_154348 chr8 14897376 14897574 + 0 NA exon (ENSMUSG00000026317.7, exon 3 of 3) protein_coding-exon (ENSMUSG00000026317.7, exon 3 of 3) 8471 ENSMUSG00000026317.7 ENSMUSG00000026317 ENSMUST00000128839 Cln8 protein_coding Interval_165358 chr9 46581856 46583611 + 0 NA Intergenic Intergenic 19759 ENSMUSG00000077383.1 ENSMUSG00000077383 ENSMUST00000104195 Gm22659 snoRNA Interval_111765 chr4 28048714 28049008 + 0 NA Intergenic Intergenic -18316 ENSMUSG00000082977.1 ENSMUSG00000082977 ENSMUST00000117938 Gm11911 processed_pseudogene Interval_4252 chr1 72198008 72198499 + 0 NA intron (ENSMUSG00000039395.8, intron 1 of 4) protein_coding-intron (ENSMUSG00000039395.8, intron 1 of 4) 14054 ENSMUSG00000039395.8 ENSMUSG00000039395 ENSMUST00000048860 Mreg protein_coding Interval_26542 chr11 58708992 58709684 + 0 NA Intergenic Intergenic 10176 ENSMUSG00000064044.2 ENSMUSG00000064044 ENSMUST00000076965 Olfr319 protein_coding Interval_154654 chr8 22386047 22386254 + 0 NA intron (ENSMUSG00000031482.9, intron 3 of 5) protein_coding-intron (ENSMUSG00000031482.9, intron 3 of 6) 12394 ENSMUSG00000031482.9 ENSMUSG00000031482 ENSMUST00000210020 Slc25a15 protein_coding Interval_1691 chr1 31222204 31222967 + 0 NA promoter-TSS (ENSMUSG00000026063.4) protein_coding-promoter-TSS (ENSMUSG00000026063.4) 32 ENSMUSG00000086727.8 ENSMUSG00000086727 ENSMUST00000135245 4931428L18Rik protein_coding Interval_95902 chr2 118209776 118210049 + 0 NA intron (ENSMUSG00000027344.14, intron 10 of 10) protein_coding-intron (ENSMUSG00000027344.14, intron 10 of 10) 38870 ENSMUSG00000093368.1 ENSMUSG00000093368 ENSMUST00000175627 Gm22800 miRNA Interval_134785 chr6 31525199 31528485 + 0 NA intron (ENSMUSG00000025608.9, intron 2 of 7) protein_coding-intron (ENSMUSG00000025608.9, intron 2 of 7) -2531 ENSMUSG00000025608.9 ENSMUSG00000025608 ENSMUST00000136877 Podxl protein_coding Interval_11619 chr1 183368701 183370189 + 0 NA exon (ENSMUSG00000056050.13, exon 1 of 4) protein_coding-exon (ENSMUSG00000056050.13, exon 1 of 4) -1631 ENSMUSG00000103415.1 ENSMUSG00000103415 ENSMUST00000194142 Gm37339 processed_pseudogene Interval_66018 chr16 30984912 30985660 + 0 NA intron (ENSMUSG00000047434.14, intron 3 of 3) protein_coding-intron (ENSMUSG00000047434.14, intron 3 of 3) -11768 ENSMUSG00000087605.1 ENSMUSG00000087605 ENSMUST00000123905 Gm15742 sense_intronic Interval_167555 chr9 70436467 70438050 + 0 NA intron (ENSMUSG00000032217.13, intron 11 of 14) protein_coding-intron (ENSMUSG00000032217.13, intron 11 of 14) -15711 ENSMUSG00000032218.7 ENSMUSG00000032218 ENSMUST00000034742 Ccnb2 protein_coding Interval_47129 chr13 76098209 76099283 + 0 NA promoter-TSS (ENSMUSG00000033991.9) protein_coding-promoter-TSS (ENSMUSG00000033991.9) -86 ENSMUSG00000021592.18 ENSMUSG00000021592 ENSMUST00000224632 Arsk protein_coding Interval_46510 chr13 66734014 66734443 + 0 NA Intergenic Intergenic 7085 ENSMUSG00000114839.1 ENSMUSG00000114839 ENSMUST00000225542 Gm40989 processed_pseudogene Interval_13323 chr10 14922811 14923834 + 0 NA Intergenic Intergenic -8538 ENSMUSG00000112724.1 ENSMUSG00000112724 ENSMUST00000218504 Gm47699 processed_pseudogene Interval_50183 chr14 8805848 8806349 + 0 NA Intergenic Intergenic -5763 ENSMUSG00000045799.6 ENSMUSG00000045799 ENSMUST00000052615 Gm9800 processed_pseudogene Interval_69287 chr16 91931123 91932142 + 0 NA promoter-TSS (ENSMUSG00000022956.11) protein_coding-promoter-TSS (ENSMUSG00000022956.11) -86 ENSMUSG00000022956.11 ENSMUSG00000022956 ENSMUST00000132049 Atp5o protein_coding Interval_113400 chr4 54493148 54493796 + 0 NA Intergenic Intergenic 25120 ENSMUSG00000093183.2 ENSMUSG00000093183 ENSMUST00000175442 Gm25687 misc_RNA Interval_85655 chr19 29367154 29367730 + 0 NA promoter-TSS (ENSMUSG00000016496.7) protein_coding-promoter-TSS (ENSMUSG00000016496.7) -13 ENSMUSG00000016496.7 ENSMUSG00000016496 ENSMUST00000016640 Cd274 protein_coding Interval_7256 chr1 128266544 128267686 + 0 NA intron (ENSMUSG00000026353.9, intron 4 of 5) protein_coding-intron (ENSMUSG00000026353.9, intron 9 of 12) 23151 ENSMUSG00000026353.9 ENSMUSG00000026353 ENSMUST00000189895 Ubxn4 protein_coding Interval_1856 chr1 34164234 34165240 + 0 NA TTS (ENSMUSG00000026131.20) protein_coding-TTS (ENSMUSG00000026131.20) 13709 ENSMUSG00000096992.3 ENSMUSG00000096992 ENSMUST00000187268 Gm26788 processed_transcript Interval_134204 chr6 22795864 22796114 + 0 NA Intergenic Intergenic 6171 ENSMUSG00000096721.1 ENSMUSG00000096721 ENSMUST00000180080 Gm25942 miRNA Interval_174373 chrX 150587812 150589475 + 0 NA promoter-TSS (ENSMUSG00000025269.16) protein_coding-promoter-TSS (ENSMUSG00000025269.16) -558 ENSMUSG00000025269.16 ENSMUSG00000025269 ENSMUST00000112719 Apex2 protein_coding Interval_32803 chr11 110823144 110824170 + 0 NA Intergenic Intergenic -144376 ENSMUSG00000051497.15 ENSMUSG00000051497 ENSMUST00000178798 Kcnj16 protein_coding Interval_55990 chr14 103709372 103709938 + 0 NA Intergenic Intergenic -10213 ENSMUSG00000089707.1 ENSMUSG00000089707 ENSMUST00000160117 Slain1os antisense Interval_127729 chr5 107129195 107129679 + 0 NA intron (ENSMUSG00000029287.14, intron 12 of 14) protein_coding-intron (ENSMUSG00000029287.14, intron 14 of 16) 6251 ENSMUSG00000106643.1 ENSMUSG00000106643 ENSMUST00000199780 Gm43422 TEC Interval_41176 chr12 111636664 111636873 + 0 NA intron (ENSMUSG00000007411.16, intron 12 of 15) protein_coding-intron (ENSMUSG00000007411.16, intron 13 of 15) 19898 ENSMUSG00000113910.1 ENSMUSG00000113910 ENSMUST00000220971 Gm48286 sense_overlapping Interval_76614 chr17 82504377 82504648 + 0 NA Intergenic Intergenic -34748 ENSMUSG00000073371.4 ENSMUSG00000073371 ENSMUST00000097278 Gm6594 processed_pseudogene Interval_12139 chr1 190019703 190019921 + 0 NA Intergenic Intergenic -97559 ENSMUSG00000026603.13 ENSMUSG00000026603 ENSMUST00000144452 Smyd2 protein_coding Interval_62516 chr15 93955975 93956309 + 0 NA TTS (ENSMUSG00000115965.1) lincRNA-TTS (ENSMUSG00000115965.1) 8566 ENSMUSG00000115965.1 ENSMUSG00000115965 ENSMUST00000229885 Gm30564 lincRNA Interval_151918 chr7 127540497 127540805 + 0 NA intron (ENSMUSG00000053877.12, intron 23 of 33) protein_coding-intron (ENSMUSG00000053877.12, intron 19 of 29) 12777 ENSMUSG00000065259.1 ENSMUSG00000065259 ENSMUST00000083325 Snora30 snoRNA Interval_133957 chr6 16550573 16551293 + 0 NA intron (ENSMUSG00000108025.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000108025.1, intron 1 of 2) 546 ENSMUSG00000108025.1 ENSMUSG00000108025 ENSMUST00000204284 Gm36503 lincRNA Interval_82423 chr18 73904389 73905009 + 0 NA Intergenic Intergenic 45312 ENSMUSG00000064036.15 ENSMUSG00000064036 ENSMUST00000134847 Mro protein_coding Interval_143637 chr7 13511170 13511783 + 0 NA Intergenic Intergenic -14157 ENSMUSG00000098644.1 ENSMUSG00000098644 ENSMUST00000183795 Bsph2-ps unprocessed_pseudogene Interval_103931 chr3 55102527 55102731 + 0 NA Intergenic Intergenic -9509 ENSMUSG00000036580.15 ENSMUSG00000036580 ENSMUST00000146109 Spg20 protein_coding Interval_75427 chr17 66493105 66493627 + 0 NA Intergenic Intergenic 26304 ENSMUSG00000023460.13 ENSMUSG00000023460 ENSMUST00000146279 Rab12 protein_coding Interval_93446 chr2 73111476 73111696 + 0 NA intron (ENSMUSG00000027108.15, intron 6 of 9) protein_coding-intron (ENSMUSG00000027108.15, intron 7 of 10) -5162 ENSMUSG00000082455.3 ENSMUSG00000082455 ENSMUST00000120830 Gm13665 processed_pseudogene Interval_16588 chr10 64653977 64654283 + 0 NA intron (ENSMUSG00000060843.11, intron 12 of 17) protein_coding-intron (ENSMUSG00000060843.11, intron 11 of 16) -349386 ENSMUSG00000089003.1 ENSMUSG00000089003 ENSMUST00000158378 Gm23854 snRNA Interval_83929 chr19 5660612 5660990 + 0 NA TTS (ENSMUSG00000056917.13) protein_coding-TTS (ENSMUSG00000056917.13) -5964 ENSMUSG00000056917.13 ENSMUSG00000056917 ENSMUST00000236827 Sipa1 protein_coding Interval_168415 chr9 80153379 80153598 + 0 NA Intergenic Intergenic -11739 ENSMUSG00000033577.18 ENSMUSG00000033577 ENSMUST00000138650 Myo6 protein_coding Interval_22677 chr11 12878670 12879027 + 0 NA Intergenic Intergenic 59090 ENSMUSG00000083859.1 ENSMUSG00000083859 ENSMUST00000118518 Gm12003 processed_pseudogene Interval_124609 chr5 52337385 52338187 + 0 NA Intergenic Intergenic 4574 ENSMUSG00000104751.1 ENSMUSG00000104751 ENSMUST00000198797 Gm43179 lincRNA Interval_9997 chr1 164796455 164796743 + 0 NA promoter-TSS (ENSMUSG00000026574.5) protein_coding-promoter-TSS (ENSMUSG00000026574.5) -45 ENSMUSG00000026574.5 ENSMUSG00000026574 ENSMUST00000027861 Dpt protein_coding Interval_109035 chr3 135320104 135320401 + 0 NA intron (ENSMUSG00000037994.14, intron 4 of 6) protein_coding-intron (ENSMUSG00000037994.14, intron 3 of 12) 12510 ENSMUSG00000037994.14 ENSMUSG00000037994 ENSMUST00000132405 Slc9b2 protein_coding Interval_28608 chr11 77127628 77128105 + 0 NA intron (ENSMUSG00000050944.14, intron 5 of 11) protein_coding-intron (ENSMUSG00000050944.14, intron 9 of 17) -19686 ENSMUSG00000082550.1 ENSMUSG00000082550 ENSMUST00000117087 Gm12344 processed_pseudogene Interval_55413 chr14 86940018 86941091 + 0 NA intron (ENSMUSG00000022021.14, intron 17 of 26) protein_coding-intron (ENSMUSG00000022021.14, intron 17 of 27) -19843 ENSMUSG00000077948.2 ENSMUSG00000077948 ENSMUST00000104755 Gm23438 miRNA Interval_62725 chr15 96477911 96478215 + 0 NA Intergenic Intergenic -16514 ENSMUSG00000116253.1 ENSMUSG00000116253 ENSMUST00000229198 Gm41392 lincRNA Interval_164684 chr9 40574948 40575186 + 0 NA Intergenic Intergenic -14138 ENSMUSG00000111858.1 ENSMUSG00000111858 ENSMUST00000214616 Gm48277 lincRNA Interval_97278 chr2 132879136 132881619 + 0 NA intron (ENSMUSG00000043110.2, intron 1 of 4) protein_coding-intron (ENSMUSG00000043110.2, intron 1 of 4) 514 ENSMUSG00000043110.2 ENSMUSG00000043110 ENSMUST00000049787 Lrrn4 protein_coding Interval_169515 chr9 98704379 98704575 + 0 NA Intergenic Intergenic 1359 ENSMUSG00000098939.1 ENSMUSG00000098939 ENSMUST00000185163 Gm27919 misc_RNA Interval_15420 chr10 45875323 45875809 + 0 NA exon (ENSMUSG00000110841.1, exon 1 of 1) transcribed_processed_pseudogene-exon (ENSMUSG00000110841.1, exon 1 of 1) 261 ENSMUSG00000110841.1 ENSMUSG00000110841 ENSMUST00000217344 Gpx4-ps2 transcribed_processed_pseudogene Interval_68191 chr16 67452803 67453030 + 0 NA intron (ENSMUSG00000064115.13, intron 1 of 9) protein_coding-intron (ENSMUSG00000064115.13, intron 1 of 9) 140310 ENSMUSG00000082823.3 ENSMUSG00000082823 ENSMUST00000119911 Gm15828 processed_pseudogene Interval_116252 chr4 109057851 109058151 + 0 NA promoter-TSS (ENSMUSG00000053510.12) protein_coding-promoter-TSS (ENSMUSG00000053510.12) 33795 ENSMUSG00000053510.12 ENSMUSG00000053510 ENSMUST00000125063 Nrd1 protein_coding Interval_95499 chr2 110316279 110316571 + 0 NA Intergenic Intergenic -1865 ENSMUSG00000041660.8 ENSMUSG00000041660 ENSMUST00000133608 Bbox1 protein_coding Interval_135016 chr6 34603476 34603992 + 0 NA intron (ENSMUSG00000029761.16, intron 1 of 4) protein_coding-intron (ENSMUSG00000029761.16, intron 1 of 13) 50160 ENSMUSG00000085382.1 ENSMUSG00000085382 ENSMUST00000137136 Gm13861 lincRNA Interval_149536 chr7 99410707 99411810 + 0 NA intron (ENSMUSG00000035314.10, intron 4 of 4) protein_coding-intron (ENSMUSG00000035314.10, intron 3 of 17) -12855 ENSMUSG00000035314.10 ENSMUSG00000035314 ENSMUST00000208061 Gdpd5 protein_coding Interval_93315 chr2 71878595 71878901 + 0 NA intron (ENSMUSG00000006494.11, intron 3 of 4) protein_coding-intron (ENSMUSG00000006494.11, intron 2 of 10) 5402 ENSMUSG00000006494.11 ENSMUSG00000006494 ENSMUST00000129427 Pdk1 protein_coding Interval_63100 chr15 99068464 99068659 + 0 NA intron (ENSMUSG00000116371.1, intron 2 of 2) antisense-intron (ENSMUSG00000116371.1, intron 2 of 2) 6108 ENSMUSG00000116371.1 ENSMUSG00000116371 ENSMUST00000230027 Gm34284 antisense Interval_85675 chr19 29593484 29594513 + 0 NA intron (ENSMUSG00000038658.15, intron 15 of 23) protein_coding-intron (ENSMUSG00000038658.15, intron 17 of 25) 52029 ENSMUSG00000046324.12 ENSMUSG00000046324 ENSMUST00000160907 Ermp1 protein_coding Interval_166191 chr9 57346325 57346941 + 0 NA Intergenic Intergenic 12505 ENSMUSG00000066626.5 ENSMUSG00000066626 ENSMUST00000085711 Gm5121 processed_pseudogene Interval_115749 chr4 103299480 103300675 + 0 NA intron (ENSMUSG00000078618.3, intron 2 of 3) lincRNA-intron (ENSMUSG00000078618.3, intron 2 of 3) 9118 ENSMUSG00000078618.3 ENSMUSG00000078618 ENSMUST00000145577 4930456L15Rik lincRNA Interval_15215 chr10 43412053 43412237 + 0 NA promoter-TSS (ENSMUSG00000110772.1) TEC-promoter-TSS (ENSMUSG00000110772.1) -386 ENSMUSG00000110772.1 ENSMUSG00000110772 ENSMUST00000216518 Gm47856 TEC Interval_102330 chr3 21955922 21957418 + 0 NA Intergenic Intergenic 41798 ENSMUSG00000106321.1 ENSMUSG00000106321 ENSMUST00000196313 Gm43674 lincRNA Interval_12745 chr10 4635872 4636592 + 0 NA intron (ENSMUSG00000019768.16, intron 1 of 8) protein_coding-intron (ENSMUSG00000019768.16, intron 1 of 8) 24639 ENSMUSG00000019768.16 ENSMUSG00000019768 ENSMUST00000137012 Esr1 protein_coding Interval_16347 chr10 62374752 62375177 + 0 NA exon (ENSMUSG00000037012.18, exon 1 of 5) protein_coding-exon (ENSMUSG00000037012.18, exon 1 of 5) 34357 ENSMUSG00000085347.1 ENSMUSG00000085347 ENSMUST00000142968 Hk1os antisense Interval_78058 chr18 7591251 7591790 + 0 NA intron (ENSMUSG00000057440.8, intron 3 of 15) protein_coding-intron (ENSMUSG00000057440.8, intron 1 of 16) 10004 ENSMUSG00000094334.2 ENSMUSG00000094334 ENSMUST00000072582 Fabp5l2 processed_pseudogene Interval_87193 chr19 46783930 46784677 + 0 NA intron (ENSMUSG00000064105.13, intron 1 of 1) protein_coding-intron (ENSMUSG00000064105.13, intron 1 of 6) 76335 ENSMUSG00000003559.8 ENSMUSG00000003559 ENSMUST00000235266 As3mt protein_coding Interval_19280 chr10 96048137 96048950 + 0 NA intron (ENSMUSG00000117008.1, intron 13 of 13) unitary_pseudogene-intron (ENSMUSG00000117008.1, intron 13 of 13) 47462 ENSMUSG00000117008.1 ENSMUSG00000117008 ENSMUST00000233655 Gm49817 unitary_pseudogene Interval_391 chr1 4843897 4844248 + 0 NA intron (ENSMUSG00000104217.1, intron 7 of 9) protein_coding-intron (ENSMUSG00000025903.14, intron 8 of 8) -13966 ENSMUSG00000033813.15 ENSMUSG00000033813 ENSMUST00000165720 Tcea1 protein_coding Interval_29195 chr11 81374870 81375431 + 0 NA intron (ENSMUSG00000020704.13, intron 1 of 9) protein_coding-intron (ENSMUSG00000020704.13, intron 1 of 9) -9863 ENSMUSG00000086971.1 ENSMUSG00000086971 ENSMUST00000141593 4930527B05Rik antisense Interval_160416 chr8 109280625 109280812 + 0 NA Intergenic Intergenic 60146 ENSMUSG00000110528.1 ENSMUSG00000110528 ENSMUST00000211890 Gm1943 processed_pseudogene Interval_67269 chr16 45158040 45159514 + 0 NA promoter-TSS (ENSMUSG00000022663.3) protein_coding-promoter-TSS (ENSMUSG00000022663.3) -324 ENSMUSG00000022664.11 ENSMUSG00000022664 ENSMUST00000181377 Slc35a5 protein_coding Interval_70759 chr17 14201006 14201524 + 0 NA intron (ENSMUSG00000048826.7, intron 1 of 2) protein_coding-intron (ENSMUSG00000048826.7, intron 1 of 3) -2463 ENSMUSG00000117185.1 ENSMUSG00000117185 ENSMUST00000232962 Gm34510 antisense Interval_59425 chr15 53047660 53047857 + 0 NA Intergenic Intergenic 60110 ENSMUSG00000061731.9 ENSMUSG00000061731 ENSMUST00000140798 Ext1 protein_coding Interval_120871 chr4 151190467 151191052 + 0 NA intron (ENSMUSG00000014592.21, intron 6 of 24) protein_coding-intron (ENSMUSG00000014592.21, intron 6 of 23) 101189 ENSMUSG00000078491.2 ENSMUSG00000078491 ENSMUST00000105667 Gm13090 protein_coding Interval_53479 chr14 57755392 57755795 + 0 NA intron (ENSMUSG00000021959.16, intron 1 of 2) protein_coding-intron (ENSMUSG00000021959.16, intron 1 of 2) -9472 ENSMUSG00000021959.16 ENSMUSG00000021959 ENSMUST00000173077 Lats2 protein_coding Interval_41399 chr12 113328344 113328676 + 0 NA TTS (ENSMUSG00000076614.7) IG_C_gene-TTS (ENSMUSG00000076614.7) 2013 ENSMUSG00000076614.7 ENSMUSG00000076614 ENSMUST00000103420 Ighg1 IG_C_gene Interval_51044 chr14 21764673 21764910 + 0 NA intron (ENSMUSG00000021770.11, intron 1 of 5) protein_coding-intron (ENSMUSG00000021770.11, intron 1 of 5) 14243 ENSMUSG00000021770.11 ENSMUSG00000021770 ENSMUST00000142023 Samd8 protein_coding Interval_67521 chr16 50184769 50185651 + 0 NA Intergenic Intergenic 74137 ENSMUSG00000098028.1 ENSMUSG00000098028 ENSMUST00000182962 Gm8824 processed_pseudogene Interval_98348 chr2 151676057 151676424 + 0 NA Intergenic Intergenic -7707 ENSMUSG00000074704.9 ENSMUSG00000074704 ENSMUST00000096439 Rad21l protein_coding Interval_7031 chr1 122677567 122678001 + 0 NA Intergenic Intergenic 124611 ENSMUSG00000089190.1 ENSMUSG00000089190 ENSMUST00000158565 Gm25771 snoRNA Interval_13429 chr10 18183686 18183881 + 0 NA intron (ENSMUSG00000071392.6, intron 2 of 20) protein_coding-intron (ENSMUSG00000071392.6, intron 3 of 20) 32552 ENSMUSG00000059554.12 ENSMUSG00000059554 ENSMUST00000052648 Ccdc28a protein_coding Interval_101718 chr3 9110923 9111235 + 0 NA Intergenic Intergenic 38312 ENSMUSG00000103011.1 ENSMUSG00000103011 ENSMUST00000193160 Gm8860 processed_pseudogene Interval_73575 chr17 40646129 40646853 + 0 NA Intergenic Intergenic 14416 ENSMUSG00000093957.1 ENSMUSG00000093957 ENSMUST00000177574 Esp3 protein_coding Interval_7635 chr1 132674072 132674287 + 0 NA intron (ENSMUSG00000026442.14, intron 1 of 2) protein_coding-intron (ENSMUSG00000026442.14, intron 1 of 26) -49667 ENSMUSG00000026442.14 ENSMUSG00000026442 ENSMUST00000189219 Nfasc protein_coding Interval_90727 chr2 32146734 32147279 + 0 NA Intergenic Intergenic -26165 ENSMUSG00000099155.1 ENSMUSG00000099155 ENSMUST00000184513 Gm27805 miRNA Interval_29086 chr11 80229140 80229831 + 0 NA intron (ENSMUSG00000017686.17, intron 6 of 14) protein_coding-intron (ENSMUSG00000017686.17, intron 6 of 19) -25216 ENSMUSG00000017686.17 ENSMUSG00000017686 ENSMUST00000236882 Rhot1 protein_coding Interval_38839 chr12 83286447 83287166 + 0 NA intron (ENSMUSG00000021221.15, intron 7 of 10) protein_coding-intron (ENSMUSG00000021221.15, intron 5 of 6) 164592 ENSMUSG00000103387.1 ENSMUSG00000103387 ENSMUST00000192978 1700030I03Rik TEC Interval_174484 chrX 153281813 153282863 + 0 NA intron (ENSMUSG00000041649.13, intron 2 of 2) protein_coding-intron (ENSMUSG00000041649.13, intron 1 of 6) 44872 ENSMUSG00000041649.13 ENSMUSG00000041649 ENSMUST00000039545 Klf8 protein_coding Interval_61850 chr15 84662799 84663593 + 0 NA Intergenic Intergenic -6424 ENSMUSG00000036106.15 ENSMUSG00000036106 ENSMUST00000065499 Prr5 protein_coding Interval_146897 chr7 55614737 55615624 + 0 NA Intergenic Intergenic -21273 ENSMUSG00000108363.1 ENSMUSG00000108363 ENSMUST00000206548 Gm44615 processed_pseudogene Interval_81885 chr18 65610970 65611300 + 0 NA intron (ENSMUSG00000042439.13, intron 3 of 3) protein_coding-intron (ENSMUSG00000042439.13, intron 2 of 5) 7301 ENSMUSG00000103194.1 ENSMUSG00000103194 ENSMUST00000195369 Gm37643 TEC Interval_138545 chr6 89084210 89084710 + 0 NA intron (ENSMUSG00000055403.13, intron 1 of 2) lincRNA-intron (ENSMUSG00000055403.13, intron 1 of 2) -56534 ENSMUSG00000090254.7 ENSMUSG00000090254 ENSMUST00000160361 Gm1965 lincRNA Interval_92452 chr2 59795940 59796215 + 0 NA intron (ENSMUSG00000035168.16, intron 11 of 25) protein_coding-intron (ENSMUSG00000035168.16, intron 12 of 26) -9991 ENSMUSG00000035168.16 ENSMUSG00000035168 ENSMUST00000147650 Tanc1 protein_coding Interval_106103 chr3 93119009 93119575 + 0 NA Intergenic Intergenic -18695 ENSMUSG00000103628.1 ENSMUSG00000103628 ENSMUST00000194345 Gm37361 processed_pseudogene Interval_47973 chr13 94788632 94789630 + 0 NA intron (ENSMUSG00000042043.6, intron 1 of 3) protein_coding-intron (ENSMUSG00000042043.6, intron 1 of 3) -28603 ENSMUSG00000042043.6 ENSMUSG00000042043 ENSMUST00000220561 Tbca protein_coding Interval_23316 chr11 21322258 21322589 + 0 NA intron (ENSMUSG00000001891.16, intron 1 of 1) protein_coding-intron (ENSMUSG00000001891.16, intron 9 of 9) 1079 ENSMUSG00000001891.16 ENSMUSG00000001891 ENSMUST00000143890 Ugp2 protein_coding Interval_67671 chr16 55863567 55863961 + 0 NA intron (ENSMUSG00000075033.4, intron 3 of 5) protein_coding-intron (ENSMUSG00000075033.4, intron 3 of 5) 20727 ENSMUSG00000116919.1 ENSMUSG00000116919 ENSMUST00000232524 Gm17809 processed_pseudogene Interval_143513 chr7 11252768 11253409 + 0 NA TTS (ENSMUSG00000110192.1) processed_pseudogene-TTS (ENSMUSG00000110192.1) 776 ENSMUSG00000110192.1 ENSMUSG00000110192 ENSMUST00000209345 Gm9652 processed_pseudogene Interval_89229 chr2 18202860 18203850 + 0 NA intron (ENSMUSG00000026743.16, intron 16 of 22) protein_coding-intron (ENSMUSG00000026743.16, intron 16 of 22) 13547 ENSMUSG00000026740.12 ENSMUSG00000026740 ENSMUST00000165793 Dnajc1 protein_coding Interval_97491 chr2 137556024 137556896 + 0 NA Intergenic Intergenic -106975 ENSMUSG00000085640.1 ENSMUSG00000085640 ENSMUST00000134833 Gm14064 lincRNA Interval_44065 chr13 40671735 40672356 + 0 NA Intergenic Intergenic -27396 ENSMUSG00000114322.1 ENSMUSG00000114322 ENSMUST00000225346 Gm47041 TEC Interval_174467 chrX 152832484 152832726 + 0 NA Intergenic Intergenic -36015 ENSMUSG00000088383.1 ENSMUSG00000088383 ENSMUST00000157758 Gm24687 ribozyme Interval_98552 chr2 153170429 153172254 + 0 NA intron (ENSMUSG00000068040.10, intron 1 of 8) protein_coding-intron (ENSMUSG00000068040.10, intron 1 of 17) 16328 ENSMUSG00000089499.1 ENSMUSG00000089499 ENSMUST00000158874 Gm25643 snRNA Interval_50742 chr14 18828349 18828587 + 0 NA intron (ENSMUSG00000058317.12, intron 3 of 4) protein_coding-intron (ENSMUSG00000058317.12, intron 2 of 4) -2828 ENSMUSG00000083606.3 ENSMUSG00000083606 ENSMUST00000118355 Gm15916 processed_pseudogene Interval_109256 chr3 138405227 138405561 + 0 NA Intergenic Intergenic -10072 ENSMUSG00000037797.14 ENSMUSG00000037797 ENSMUST00000013458 Adh4 protein_coding Interval_136887 chr6 62994836 62996230 + 0 NA Intergenic Intergenic 52639 ENSMUSG00000107708.1 ENSMUSG00000107708 ENSMUST00000203408 Gm19131 transcribed_unprocessed_pseudogene Interval_128031 chr5 110386295 110387539 + 0 NA promoter-TSS (ENSMUSG00000043323.17) protein_coding-promoter-TSS (ENSMUSG00000043323.17) 32759 ENSMUSG00000072754.9 ENSMUSG00000072754 ENSMUST00000190963 Lrcol1 protein_coding Interval_99486 chr2 162324405 162325061 + 0 NA intron (ENSMUSG00000053141.16, intron 2 of 29) protein_coding-intron (ENSMUSG00000053141.16, intron 2 of 30) -66080 ENSMUSG00000084919.1 ENSMUSG00000084919 ENSMUST00000151688 Ptprtos antisense Interval_151303 chr7 120835072 120837134 + 0 NA Intergenic Intergenic 23738 ENSMUSG00000109392.1 ENSMUSG00000109392 ENSMUST00000208668 Gm5737 protein_coding Interval_41142 chr12 111455344 111456320 + 0 NA TTS (ENSMUSG00000021281.15) protein_coding-TTS (ENSMUSG00000021281.15) 9748 ENSMUSG00000021281.15 ENSMUSG00000021281 ENSMUST00000127028 Tnfaip2 protein_coding Interval_128866 chr5 115708780 115709545 + 0 NA intron (ENSMUSG00000041609.16, intron 2 of 4) protein_coding-intron (ENSMUSG00000041609.16, intron 2 of 8) -59368 ENSMUSG00000041609.16 ENSMUSG00000041609 ENSMUST00000148840 Bicdl1 protein_coding Interval_64048 chr16 6414580 6415707 + 0 NA intron (ENSMUSG00000008658.16, intron 1 of 14) protein_coding-intron (ENSMUSG00000008658.16, intron 1 of 14) 439558 ENSMUSG00000101481.1 ENSMUSG00000101481 ENSMUST00000190515 1700123O21Rik sense_intronic Interval_16217 chr10 61498055 61498891 + 0 NA promoter-TSS (ENSMUSG00000112058.1) antisense-promoter-TSS (ENSMUSG00000112058.1) -376 ENSMUSG00000112058.1 ENSMUSG00000112058 ENSMUST00000217859 Gm47593 antisense Interval_31014 chr11 97714158 97714900 + 0 NA TTS (ENSMUSG00000018547.8) protein_coding-TTS (ENSMUSG00000018547.8) -9122 ENSMUSG00000085145.1 ENSMUSG00000085145 ENSMUST00000137598 Gm11614 antisense Interval_50966 chr14 21348654 21348896 + 0 NA intron (ENSMUSG00000039197.10, intron 7 of 10) protein_coding-intron (ENSMUSG00000039197.10, intron 7 of 10) 85151 ENSMUSG00000088456.1 ENSMUSG00000088456 ENSMUST00000157831 Gm26372 misc_RNA Interval_99919 chr2 165811210 165812058 + 0 NA intron (ENSMUSG00000039671.18, intron 14 of 22) protein_coding-intron (ENSMUSG00000039671.18, intron 15 of 23) -46050 ENSMUSG00000085274.1 ENSMUSG00000085274 ENSMUST00000155786 BC046401 processed_transcript Interval_68401 chr16 75798760 75799424 + 0 NA Intergenic Intergenic -26035 ENSMUSG00000081250.3 ENSMUSG00000081250 ENSMUST00000120406 Gm15554 processed_pseudogene Interval_94691 chr2 93413448 93413835 + 0 NA intron (ENSMUSG00000085852.1, intron 3 of 5) antisense-intron (ENSMUSG00000085852.1, intron 3 of 5) 8366 ENSMUSG00000099238.1 ENSMUSG00000099238 ENSMUST00000184769 Mir7001 miRNA Interval_64875 chr16 16896137 16897388 + 0 NA intron (ENSMUSG00000026181.13, intron 1 of 3) protein_coding-intron (ENSMUSG00000026181.13, intron 1 of 7) 188 ENSMUSG00000026181.13 ENSMUSG00000026181 ENSMUST00000232247 Ppm1f protein_coding Interval_111585 chr4 23982924 23983631 + 0 NA Intergenic Intergenic -49323 ENSMUSG00000100395.1 ENSMUSG00000100395 ENSMUST00000188547 Gm28448 lincRNA Interval_103059 chr3 34781651 34782092 + 0 NA exon (ENSMUSG00000106519.1, exon 2 of 2) lincRNA-exon (ENSMUSG00000106519.1, exon 2 of 2) 9796 ENSMUSG00000106519.1 ENSMUSG00000106519 ENSMUST00000197492 Gm38509 lincRNA Interval_49303 chr13 110444684 110445531 + 0 NA Intergenic Intergenic 49095 ENSMUSG00000021701.8 ENSMUSG00000021701 ENSMUST00000225156 Plk2 protein_coding Interval_13452 chr10 18388809 18390264 + 0 NA promoter-TSS (ENSMUSG00000039835.16) protein_coding-promoter-TSS (ENSMUSG00000039835.16) -52295 ENSMUSG00000111313.1 ENSMUSG00000111313 ENSMUST00000213578 Gm18942 processed_pseudogene Interval_12357 chr1 192497223 192497667 + 0 NA intron (ENSMUSG00000037375.16, intron 11 of 11) protein_coding-intron (ENSMUSG00000058248.12, intron 10 of 10) 62705 ENSMUSG00000058248.12 ENSMUSG00000058248 ENSMUST00000151152 Kcnh1 protein_coding Interval_123127 chr5 29934885 29935628 + 0 NA Intergenic Intergenic 15462 ENSMUSG00000105926.1 ENSMUSG00000105926 ENSMUST00000199654 Gm43386 TEC Interval_170785 chr9 110741948 110744262 + 0 NA promoter-TSS (ENSMUSG00000032492.14) protein_coding-promoter-TSS (ENSMUSG00000032492.14) 1244 ENSMUSG00000059741.13 ENSMUSG00000059741 ENSMUST00000153142 Myl3 protein_coding Interval_93880 chr2 77896067 77896286 + 0 NA exon (ENSMUSG00000027014.14, exon 21 of 21) protein_coding-exon (ENSMUSG00000027014.14, exon 21 of 21) -14709 ENSMUSG00000087353.1 ENSMUSG00000087353 ENSMUST00000154480 Gm13727 processed_transcript Interval_130362 chr5 126718359 126718772 + 0 NA intron (ENSMUSG00000105673.1, intron 1 of 3) lincRNA-intron (ENSMUSG00000105673.1, intron 1 of 3) 8719 ENSMUSG00000106235.1 ENSMUSG00000106235 ENSMUST00000200003 Gm33347 lincRNA Interval_2485 chr1 39694873 39695621 + 0 NA intron (ENSMUSG00000057173.8, intron 5 of 14) protein_coding-intron (ENSMUSG00000057173.8, intron 5 of 14) 25750 ENSMUSG00000057173.8 ENSMUSG00000057173 ENSMUST00000126760 Rfx8 protein_coding Interval_20802 chr10 121070565 121070956 + 0 NA intron (ENSMUSG00000020218.11, intron 2 of 9) protein_coding-intron (ENSMUSG00000020218.11, intron 2 of 9) 36736 ENSMUSG00000020218.11 ENSMUSG00000020218 ENSMUST00000145691 Wif1 protein_coding Interval_70662 chr17 12883759 12884329 + 0 NA Intergenic Intergenic 8010 ENSMUSG00000059408.3 ENSMUSG00000059408 ENSMUST00000075296 Mrgprh protein_coding Interval_40960 chr12 110277410 110279476 + 0 NA promoter-TSS (ENSMUSG00000075707.5) protein_coding-promoter-TSS (ENSMUSG00000075707.5) -314 ENSMUSG00000080356.1 ENSMUSG00000080356 ENSMUST00000116706 Mir1247 miRNA Interval_80788 chr18 47070755 47071180 + 0 NA intron (ENSMUSG00000042705.9, intron 5 of 6) protein_coding-intron (ENSMUSG00000042705.9, intron 5 of 6) -41172 ENSMUSG00000117621.1 ENSMUSG00000117621 ENSMUST00000234633 Hspe1-rs1 protein_coding Interval_163725 chr9 24937220 24938338 + 0 NA Intergenic Intergenic -15194 ENSMUSG00000110872.1 ENSMUSG00000110872 ENSMUST00000217324 Gm48255 processed_pseudogene Interval_98030 chr2 146918130 146919617 + 0 NA intron (ENSMUSG00000074749.10, intron 6 of 13) protein_coding-intron (ENSMUSG00000074749.10, intron 6 of 13) 62964 ENSMUSG00000074749.10 ENSMUSG00000074749 ENSMUST00000135595 Kiz protein_coding Interval_142505 chr6 142926619 142926852 + 0 NA intron (ENSMUSG00000030283.7, intron 1 of 4) protein_coding-intron (ENSMUSG00000030283.7, intron 1 of 4) 37406 ENSMUSG00000030283.7 ENSMUSG00000030283 ENSMUST00000147058 St8sia1 protein_coding Interval_1990 chr1 35706596 35707018 + 0 NA Intergenic Intergenic -54795 ENSMUSG00000064601.1 ENSMUSG00000064601 ENSMUST00000082667 Gm25634 snRNA Interval_89707 chr2 24881558 24882284 + 0 NA intron (ENSMUSG00000036893.17, intron 2 of 15) protein_coding-intron (ENSMUSG00000036893.17, intron 3 of 25) -5592 ENSMUSG00000103162.1 ENSMUSG00000103162 ENSMUST00000192397 Gm38147 TEC Interval_61119 chr15 79347021 79348406 + 0 NA promoter-TSS (ENSMUSG00000042622.14) protein_coding-promoter-TSS (ENSMUSG00000042622.14) -689 ENSMUSG00000042622.14 ENSMUSG00000042622 ENSMUST00000229285 Maff protein_coding Interval_155326 chr8 31272348 31273032 + 0 NA Intergenic Intergenic 8124 ENSMUSG00000110133.1 ENSMUSG00000110133 ENSMUST00000209631 Gm8168 processed_pseudogene Interval_152952 chr7 140007984 140008162 + 0 NA exon (ENSMUSG00000025474.9, exon 6 of 18) protein_coding-exon (ENSMUSG00000025474.9, exon 6 of 18) -15565 ENSMUSG00000025473.16 ENSMUSG00000025473 ENSMUST00000173209 Adam8 protein_coding Interval_19733 chr10 108363270 108364772 + 0 NA TTS (ENSMUSG00000065653.1) snoRNA-TTS (ENSMUSG00000065653.1) 356 ENSMUSG00000065653.1 ENSMUSG00000065653 ENSMUST00000083719 Gm23105 snoRNA Interval_95072 chr2 103713141 103713689 + 0 NA intron (ENSMUSG00000032724.5, intron 14 of 16) protein_coding-intron (ENSMUSG00000032724.5, intron 14 of 16) -1620 ENSMUSG00000032724.5 ENSMUSG00000032724 ENSMUST00000131122 Abtb2 protein_coding Interval_33863 chr11 119058439 119059923 + 0 NA Intergenic Intergenic -18270 ENSMUSG00000025578.9 ENSMUSG00000025578 ENSMUST00000143831 Cbx8 protein_coding Interval_14182 chr10 28440560 28440948 + 0 NA intron (ENSMUSG00000019889.10, intron 7 of 14) protein_coding-intron (ENSMUSG00000019889.10, intron 7 of 31) -146239 ENSMUSG00000019889.10 ENSMUSG00000019889 ENSMUST00000220404 Ptprk protein_coding Interval_40973 chr12 110366131 110367343 + 0 NA Intergenic Intergenic 41352 ENSMUSG00000114183.1 ENSMUSG00000114183 ENSMUST00000222991 Gm47195 processed_pseudogene Interval_22003 chr11 5715277 5718798 + 0 NA TTS (ENSMUSG00000049680.17) protein_coding-TTS (ENSMUSG00000049680.17) -9350 ENSMUSG00000020477.10 ENSMUSG00000020477 ENSMUST00000123697 Mrps24 protein_coding Interval_125164 chr5 65022945 65023322 + 0 NA intron (ENSMUSG00000029185.14, intron 8 of 13) protein_coding-intron (ENSMUSG00000029185.14, intron 8 of 13) 50483 ENSMUSG00000106186.1 ENSMUSG00000106186 ENSMUST00000197119 Gm43627 TEC Interval_157902 chr8 75383412 75383784 + 0 NA promoter-TSS (ENSMUSG00000110543.1) processed_pseudogene-promoter-TSS (ENSMUSG00000110543.1) -204 ENSMUSG00000110543.1 ENSMUSG00000110543 ENSMUST00000211897 Umpk-ps processed_pseudogene Interval_106524 chr3 96931206 96931759 + 0 NA intron (ENSMUSG00000057123.14, intron 1 of 3) protein_coding-intron (ENSMUSG00000057123.14, intron 1 of 3) -5462 ENSMUSG00000049908.6 ENSMUSG00000049908 ENSMUST00000062944 Gja8 protein_coding Interval_25702 chr11 50886739 50888115 + 0 NA promoter-TSS (ENSMUSG00000048728.15) protein_coding-promoter-TSS (ENSMUSG00000048728.15) 74 ENSMUSG00000048728.15 ENSMUSG00000048728 ENSMUST00000136599 Zfp454 protein_coding Interval_109660 chr3 145800060 145800812 + 0 NA intron (ENSMUSG00000028194.15, intron 1 of 5) protein_coding-intron (ENSMUSG00000028194.15, intron 1 of 5) -10043 ENSMUSG00000028194.15 ENSMUSG00000028194 ENSMUST00000127193 Ddah1 protein_coding Interval_101159 chr2 178629740 178630027 + 0 NA Intergenic Intergenic 169253 ENSMUSG00000039155.15 ENSMUSG00000039155 ENSMUST00000176869 Cdh26 protein_coding Interval_145493 chr7 35178852 35179377 + 0 NA Intergenic Intergenic -7368 ENSMUSG00000030495.12 ENSMUSG00000030495 ENSMUST00000146959 Slc7a10 protein_coding Interval_112334 chr4 40637034 40637543 + 0 NA Intergenic Intergenic -41044 ENSMUSG00000081720.1 ENSMUSG00000081720 ENSMUST00000117626 Gm12391 processed_pseudogene Interval_60381 chr15 73386401 73386614 + 0 NA intron (ENSMUSG00000022607.18, intron 2 of 29) protein_coding-intron (ENSMUSG00000022607.18, intron 2 of 31) 21732 ENSMUSG00000115602.1 ENSMUSG00000115602 ENSMUST00000228413 Gm7908 processed_pseudogene Interval_43051 chr13 23497859 23498975 + 0 NA Intergenic Intergenic -9587 ENSMUSG00000053216.15 ENSMUSG00000053216 ENSMUST00000110432 Btn2a2 protein_coding Interval_106325 chr3 95388409 95389058 + 0 NA intron (ENSMUSG00000105734.1, intron 1 of 1) protein_coding-intron (ENSMUSG00000105734.1, intron 1 of 1) 14108 ENSMUSG00000105734.1 ENSMUSG00000105734 ENSMUST00000196239 4930558C23Rik protein_coding Interval_124448 chr5 47909448 47909913 + 0 NA Intergenic Intergenic -65325 ENSMUSG00000105994.1 ENSMUSG00000105994 ENSMUST00000198188 Gm43427 processed_pseudogene Interval_12786 chr10 5384438 5385016 + 0 NA intron (ENSMUSG00000096054.3, intron 13 of 145) protein_coding-intron (ENSMUSG00000096054.3, intron 13 of 31) 27554 ENSMUSG00000094906.1 ENSMUSG00000094906 ENSMUST00000104408 Gm23573 snRNA Interval_118785 chr4 133688526 133688876 + 0 NA TTS (ENSMUSG00000007880.16) protein_coding-TTS (ENSMUSG00000007880.16) -16054 ENSMUSG00000043257.15 ENSMUSG00000043257 ENSMUST00000151837 Pigv protein_coding Interval_15541 chr10 50981231 50981464 + 0 NA exon (ENSMUSG00000019913.4, exon 10 of 11) protein_coding-exon (ENSMUSG00000019913.4, exon 10 of 11) 86593 ENSMUSG00000019913.4 ENSMUSG00000019913 ENSMUST00000020071 Sim1 protein_coding Interval_125441 chr5 67176373 67176938 + 0 NA Intergenic Intergenic 49152 ENSMUSG00000106995.1 ENSMUSG00000106995 ENSMUST00000201933 Gm33167 TEC Interval_114191 chr4 66661855 66662153 + 0 NA Intergenic Intergenic 63540 ENSMUSG00000082053.1 ENSMUSG00000082053 ENSMUST00000118844 Gm11220 processed_pseudogene Interval_159185 chr8 91462690 91463309 + 0 NA intron (ENSMUSG00000110138.1, intron 3 of 3) protein_coding-intron (ENSMUSG00000055932.15, intron 4 of 8) 11599 ENSMUSG00000110138.1 ENSMUSG00000110138 ENSMUST00000211287 4831440D22Rik antisense Interval_152768 chr7 137396988 137398190 + 0 NA intron (ENSMUSG00000040139.14, intron 1 of 1) protein_coding-intron (ENSMUSG00000040139.14, intron 1 of 3) 13167 ENSMUSG00000040139.14 ENSMUSG00000040139 ENSMUST00000120340 9430038I01Rik protein_coding Interval_101625 chr3 8033628 8034143 + 0 NA Intergenic Intergenic -79003 ENSMUSG00000100010.5 ENSMUSG00000100010 ENSMUST00000187729 1700010I02Rik lincRNA Interval_60674 chr15 76087251 76087571 + 0 NA TTS (ENSMUSG00000075590.4) protein_coding-TTS (ENSMUSG00000075590.4) 3117 ENSMUSG00000075590.4 ENSMUSG00000075590 ENSMUST00000228419 Nrbp2 protein_coding Interval_121580 chr5 3588110 3588775 + 0 NA intron (ENSMUSG00000040302.17, intron 3 of 3) protein_coding-intron (ENSMUSG00000040302.17, intron 4 of 4) 3330 ENSMUSG00000104891.1 ENSMUSG00000104891 ENSMUST00000198718 2510017J16Rik antisense Interval_63418 chr15 100945928 100946310 + 0 NA intron (ENSMUSG00000023033.14, intron 2 of 26) protein_coding-intron (ENSMUSG00000023033.14, intron 2 of 26) -24003 ENSMUSG00000023033.14 ENSMUSG00000023033 ENSMUST00000201246 Scn8a protein_coding Interval_80292 chr18 38903900 38904333 + 0 NA intron (ENSMUSG00000117994.1, intron 2 of 2) protein_coding-intron (ENSMUSG00000036585.16, intron 1 of 3) 11399 ENSMUSG00000117994.1 ENSMUSG00000117994 ENSMUST00000156167 Gm5820 lincRNA Interval_70142 chr17 5762391 5764482 + 0 NA Intergenic Intergenic -36055 ENSMUSG00000096965.7 ENSMUSG00000096965 ENSMUST00000181392 3300005D01Rik lincRNA Interval_108551 chr3 128558844 128559059 + 0 NA Intergenic Intergenic 18579 ENSMUSG00000065248.1 ENSMUSG00000065248 ENSMUST00000083314 Gm22293 snoRNA Interval_73015 chr17 34143064 34143311 + 0 NA promoter-TSS (ENSMUSG00000037548.15) protein_coding-promoter-TSS (ENSMUSG00000037548.15) -120 ENSMUSG00000037548.15 ENSMUSG00000037548 ENSMUST00000171231 H2-DMb2 protein_coding Interval_122890 chr5 26975972 26976941 + 0 NA intron (ENSMUSG00000061576.15, intron 1 of 25) protein_coding-intron (ENSMUSG00000061576.15, intron 1 of 25) 31165 ENSMUSG00000081970.1 ENSMUSG00000081970 ENSMUST00000120811 Gm16057 processed_pseudogene Interval_120374 chr4 148181690 148183221 + 0 NA Intergenic Intergenic 21834 ENSMUSG00000041556.8 ENSMUSG00000041556 ENSMUST00000047951 Fbxo2 protein_coding Interval_76944 chr17 85098820 85099207 + 0 NA intron (ENSMUSG00000071037.6, intron 2 of 3) protein_coding-intron (ENSMUSG00000071037.6, intron 2 of 10) 8407 ENSMUSG00000071037.6 ENSMUSG00000071037 ENSMUST00000234501 Camkmt protein_coding Interval_161447 chr8 120508913 120510313 + 0 NA intron (ENSMUSG00000031822.20, intron 1 of 15) protein_coding-intron (ENSMUSG00000031822.20, intron 1 of 15) -11002 ENSMUSG00000097983.1 ENSMUSG00000097983 ENSMUST00000182423 Gm26971 sense_intronic Interval_43885 chr13 37845200 37845377 + 0 NA intron (ENSMUSG00000039087.17, intron 1 of 9) protein_coding-intron (ENSMUSG00000039087.17, intron 1 of 9) -45498 ENSMUSG00000114370.1 ENSMUSG00000114370 ENSMUST00000224624 Gm46411 antisense Interval_134307 chr6 24778871 24779724 + 0 NA Intergenic Intergenic -11918 ENSMUSG00000029682.5 ENSMUSG00000029682 ENSMUST00000031693 Spam1 protein_coding Interval_3782 chr1 63069272 63069703 + 0 NA intron (ENSMUSG00000040865.15, intron 7 of 11) protein_coding-intron (ENSMUSG00000040865.15, intron 6 of 10) -4287 ENSMUSG00000081429.1 ENSMUSG00000081429 ENSMUST00000118179 Rps27-ps1 processed_pseudogene Interval_125935 chr5 75960153 75960679 + 0 NA TTS (ENSMUSG00000062960.10) protein_coding-TTS (ENSMUSG00000062960.10) 18042 ENSMUSG00000062960.10 ENSMUSG00000062960 ENSMUST00000149573 Kdr protein_coding Interval_126139 chr5 78780705 78780934 + 0 NA TTS (ENSMUSG00000077178.1) snoRNA-TTS (ENSMUSG00000077178.1) 960 ENSMUSG00000077178.1 ENSMUSG00000077178 ENSMUST00000103990 Gm25756 snoRNA Interval_146519 chr7 46569259 46569949 + 0 NA intron (ENSMUSG00000087492.2, intron 1 of 2) protein_coding-intron (ENSMUSG00000030839.12, intron 9 of 10) -7879 ENSMUSG00000110272.1 ENSMUSG00000110272 ENSMUST00000210436 Gm45310 TEC Interval_67138 chr16 43860123 43860334 + 0 NA Intergenic Intergenic 20985 ENSMUSG00000022704.16 ENSMUSG00000022704 ENSMUST00000124674 Qtrt2 protein_coding Interval_59417 chr15 52801323 52801747 + 0 NA Intergenic Intergenic -15268 ENSMUSG00000115137.1 ENSMUSG00000115137 ENSMUST00000228167 Gm34794 lincRNA Interval_3412 chr1 58119578 58121179 + 0 NA intron (ENSMUSG00000064294.12, intron 4 of 7) protein_coding-intron (ENSMUSG00000064294.12, intron 4 of 34) 7192 ENSMUSG00000064294.12 ENSMUSG00000064294 ENSMUST00000160815 Aox3 protein_coding Interval_71120 chr17 18816260 18816470 + 0 NA intron (ENSMUSG00000093531.3, intron 1 of 5) unprocessed_pseudogene-intron (ENSMUSG00000093531.3, intron 1 of 5) 5530 ENSMUSG00000093531.3 ENSMUSG00000093531 ENSMUST00000176899 Vmn2r-ps117 unprocessed_pseudogene Interval_56685 chr14 121365656 121366322 + 0 NA intron (ENSMUSG00000063410.8, intron 1 of 1) protein_coding-intron (ENSMUSG00000063410.8, intron 1 of 10) 14022 ENSMUSG00000063410.8 ENSMUSG00000063410 ENSMUST00000226158 Stk24 protein_coding Interval_105586 chr3 87929538 87930837 + 0 NA promoter-TSS (ENSMUSG00000004896.16) protein_coding-promoter-TSS (ENSMUSG00000004896.16) -127 ENSMUSG00000048039.8 ENSMUSG00000048039 ENSMUST00000055984 Isg20l2 protein_coding Interval_3646 chr1 60354849 60355204 + 0 NA TTS (ENSMUSG00000103822.1) TEC-TTS (ENSMUSG00000103822.1) 1907 ENSMUSG00000103822.1 ENSMUSG00000103822 ENSMUST00000191764 6030460B20Rik TEC Interval_174771 chrX 166440038 166441228 + 0 NA promoter-TSS (ENSMUSG00000040586.8) protein_coding-promoter-TSS (ENSMUSG00000040586.8) 71 ENSMUSG00000040586.8 ENSMUSG00000040586 ENSMUST00000049501 Ofd1 protein_coding Interval_126691 chr5 92080321 92080627 + 0 NA intron (ENSMUSG00000029405.16, intron 1 of 11) protein_coding-intron (ENSMUSG00000029405.16, intron 1 of 10) -12942 ENSMUSG00000029405.16 ENSMUSG00000029405 ENSMUST00000202125 G3bp2 protein_coding Interval_150283 chr7 109265893 109266113 + 0 NA Intergenic Intergenic -41803 ENSMUSG00000109001.1 ENSMUSG00000109001 ENSMUST00000208274 Gm45024 lincRNA Interval_40556 chr12 105719834 105720966 + 0 NA intron (ENSMUSG00000041323.6, intron 1 of 4) protein_coding-intron (ENSMUSG00000041323.6, intron 4 of 17) 1544 ENSMUSG00000041323.6 ENSMUSG00000041323 ENSMUST00000220702 Ak7 protein_coding Interval_2243 chr1 37312981 37313276 + 0 NA intron (ENSMUSG00000026113.17, intron 1 of 25) protein_coding-intron (ENSMUSG00000026113.17, intron 1 of 25) -13431 ENSMUSG00000102231.1 ENSMUSG00000102231 ENSMUST00000192404 1700074A21Rik TEC Interval_101436 chr2 181382698 181382922 + 0 NA exon (ENSMUSG00000090077.9, exon 4 of 5) protein_coding-exon (ENSMUSG00000090077.9, exon 4 of 5) 1452 ENSMUSG00000090077.9 ENSMUSG00000090077 ENSMUST00000126733 Lime1 protein_coding Interval_11458 chr1 182008002 182008627 + 0 NA promoter-TSS (ENSMUSG00000102760.1) TEC-promoter-TSS (ENSMUSG00000102760.1) -628 ENSMUSG00000102760.1 ENSMUSG00000102760 ENSMUST00000191734 Gm37258 TEC Interval_44805 chr13 48780130 48780527 + 0 NA Intergenic Intergenic -16747 ENSMUSG00000113297.1 ENSMUSG00000113297 ENSMUST00000222192 Rpl17-ps6 processed_pseudogene Interval_134323 chr6 25098196 25099124 + 0 NA Intergenic Intergenic -19757 ENSMUSG00000087867.1 ENSMUSG00000087867 ENSMUST00000157242 Gm24443 snoRNA Interval_80635 chr18 44911729 44911926 + 0 NA Intergenic Intergenic 56592 ENSMUSG00000034653.11 ENSMUSG00000034653 ENSMUST00000202176 Ythdc2 protein_coding Interval_115912 chr4 106225420 106226492 + 0 NA Intergenic Intergenic -15260 ENSMUSG00000086249.1 ENSMUSG00000086249 ENSMUST00000140196 Gm12724 processed_transcript Interval_98623 chr2 153610804 153613360 + 0 NA Intergenic Intergenic 20649 ENSMUSG00000056941.17 ENSMUSG00000056941 ENSMUST00000109782 Commd7 protein_coding Interval_14328 chr10 30906573 30908394 + 0 NA Intergenic Intergenic 26966 ENSMUSG00000110918.1 ENSMUSG00000110918 ENSMUST00000215584 Gm48862 processed_pseudogene Interval_82210 chr18 69138787 69139934 + 0 NA Intergenic Intergenic 34760 ENSMUSG00000088166.1 ENSMUSG00000088166 ENSMUST00000157541 Gm23536 rRNA Interval_36427 chr12 44475536 44475853 + 0 NA intron (ENSMUSG00000020598.16, intron 3 of 24) protein_coding-intron (ENSMUSG00000020598.16, intron 3 of 30) 65904 ENSMUSG00000112448.1 ENSMUSG00000112448 ENSMUST00000218248 Gm48182 TEC Interval_125486 chr5 67531996 67533115 + 0 NA Intergenic Intergenic 68652 ENSMUSG00000107385.3 ENSMUSG00000107385 ENSMUST00000202828 C330024D21Rik processed_transcript Interval_115439 chr4 98939540 98940709 + 0 NA intron (ENSMUSG00000028556.15, intron 7 of 7) protein_coding-intron (ENSMUSG00000028556.15, intron 48 of 48) 16160 ENSMUSG00000028560.11 ENSMUSG00000028560 ENSMUST00000125104 Usp1 protein_coding Interval_27574 chr11 68805740 68805997 + 0 NA intron (ENSMUSG00000020900.15, intron 33 of 40) protein_coding-intron (ENSMUSG00000020900.15, intron 35 of 42) 54128 ENSMUSG00000018736.14 ENSMUSG00000018736 ENSMUST00000127469 Ndel1 protein_coding Interval_57940 chr15 25651160 25652786 + 0 NA intron (ENSMUSG00000022272.17, intron 1 of 21) protein_coding-intron (ENSMUSG00000022272.17, intron 1 of 40) 17346 ENSMUSG00000115252.1 ENSMUSG00000115252 ENSMUST00000228949 Gm48996 TEC Interval_160986 chr8 116670627 116671111 + 0 NA intron (ENSMUSG00000031758.10, intron 1 of 6) protein_coding-intron (ENSMUSG00000031758.10, intron 1 of 6) 62122 ENSMUSG00000031758.10 ENSMUSG00000031758 ENSMUST00000109102 Cdyl2 protein_coding Interval_60906 chr15 77761810 77763161 + 0 NA intron (ENSMUSG00000022443.17, intron 40 of 40) protein_coding-intron (ENSMUSG00000022443.17, intron 40 of 40) -5482 ENSMUSG00000056656.6 ENSMUSG00000056656 ENSMUST00000229332 Apol8 protein_coding Interval_126965 chr5 98552875 98553613 + 0 NA TTS (ENSMUSG00000067101.5) lincRNA-TTS (ENSMUSG00000067101.5) 549 ENSMUSG00000079416.1 ENSMUSG00000079416 ENSMUST00000112956 Gm11111 protein_coding Interval_82413 chr18 73814947 73816021 + 0 NA promoter-TSS (ENSMUSG00000024556.4) protein_coding-promoter-TSS (ENSMUSG00000024556.4) -35 ENSMUSG00000024556.4 ENSMUSG00000024556 ENSMUST00000235595 Me2 protein_coding Interval_165252 chr9 45795877 45796326 + 0 NA intron (ENSMUSG00000043987.18, intron 3 of 25) protein_coding-intron (ENSMUSG00000043987.18, intron 7 of 29) -1835 ENSMUSG00000043987.18 ENSMUSG00000043987 ENSMUST00000214868 Cep164 protein_coding Interval_80636 chr18 44931257 44931462 + 0 NA Intergenic Intergenic 76124 ENSMUSG00000034653.11 ENSMUSG00000034653 ENSMUST00000202176 Ythdc2 protein_coding Interval_40213 chr12 102581736 102581939 + 0 NA intron (ENSMUSG00000057963.9, intron 7 of 9) protein_coding-intron (ENSMUSG00000057963.9, intron 7 of 9) 9573 ENSMUSG00000102953.1 ENSMUSG00000102953 ENSMUST00000192133 Gm37019 TEC Interval_41930 chr13 4666960 4667152 + 0 NA intron (ENSMUSG00000113717.1, intron 1 of 6) lincRNA-intron (ENSMUSG00000113717.1, intron 1 of 6) 57722 ENSMUSG00000094772.2 ENSMUSG00000094772 ENSMUST00000086508 Rpl29-ps2 transcribed_processed_pseudogene Interval_148677 chr7 84077246 84077786 + 0 NA intron (ENSMUSG00000052353.13, intron 1 of 23) protein_coding-intron (ENSMUSG00000052353.13, intron 1 of 28) 8986 ENSMUSG00000052353.13 ENSMUSG00000052353 ENSMUST00000147578 Cemip protein_coding Interval_11675 chr1 184540002 184540293 + 0 NA intron (ENSMUSG00000101574.1, intron 2 of 5) lincRNA-intron (ENSMUSG00000101574.1, intron 2 of 5) 17544 ENSMUSG00000101574.1 ENSMUSG00000101574 ENSMUST00000188766 1700112H15Rik lincRNA Interval_111490 chr4 22114230 22115477 + 0 NA Intergenic Intergenic 2679 ENSMUSG00000082490.1 ENSMUSG00000082490 ENSMUST00000117612 Gm11880 processed_pseudogene Interval_98353 chr2 151729647 151730121 + 0 NA promoter-TSS (ENSMUSG00000032869.15) protein_coding-promoter-TSS (ENSMUSG00000032869.15) 11409 ENSMUSG00000032869.15 ENSMUSG00000032869 ENSMUST00000123449 Psmf1 protein_coding Interval_124174 chr5 38904712 38905873 + 0 NA Intergenic Intergenic -28480 ENSMUSG00000039315.15 ENSMUSG00000039315 ENSMUST00000171633 Clnk protein_coding Interval_73800 chr17 43816252 43817734 + 0 NA intron (ENSMUSG00000039601.16, intron 1 of 4) protein_coding-intron (ENSMUSG00000039601.16, intron 1 of 4) 118630 ENSMUSG00000084474.1 ENSMUSG00000084474 ENSMUST00000122525 Gm25783 snRNA Interval_65374 chr16 21982328 21984916 + 0 NA intron (ENSMUSG00000044626.13, intron 2 of 9) protein_coding-intron (ENSMUSG00000044626.13, intron 2 of 9) -7157 ENSMUSG00000044626.13 ENSMUSG00000044626 ENSMUST00000232120 Liph protein_coding Interval_143240 chr7 4692981 4693927 + 0 NA intron (ENSMUSG00000035390.16, intron 3 of 9) protein_coding-intron (ENSMUSG00000035390.16, intron 3 of 18) 2374 ENSMUSG00000035390.16 ENSMUSG00000035390 ENSMUST00000123637 Brsk1 protein_coding Interval_122590 chr5 24053559 24054378 + 0 NA Intergenic Intergenic -31276 ENSMUSG00000106118.1 ENSMUSG00000106118 ENSMUST00000197900 Gm18038 processed_pseudogene Interval_167513 chr9 70181087 70181935 + 0 NA Intergenic Intergenic -25839 ENSMUSG00000032220.10 ENSMUSG00000032220 ENSMUST00000034745 Myo1e protein_coding Interval_119946 chr4 141060042 141061321 + 0 NA promoter-TSS (ENSMUSG00000040860.16) protein_coding-promoter-TSS (ENSMUSG00000040860.16) -2482 ENSMUSG00000040860.16 ENSMUSG00000040860 ENSMUST00000144196 Crocc protein_coding Interval_8358 chr1 137898398 137899025 + 0 NA exon (ENSMUSG00000098243.3, exon 1 of 3) processed_transcript-exon (ENSMUSG00000098243.3, exon 1 of 3) 116 ENSMUSG00000098243.3 ENSMUSG00000098243 ENSMUST00000182127 Gm4258 processed_transcript Interval_72422 chr17 29725193 29725491 + 0 NA Intergenic Intergenic 8270 ENSMUSG00000117434.1 ENSMUSG00000117434 ENSMUST00000234637 1810014P07Rik bidirectional_promoter_lncRNA Interval_160361 chr8 108742373 108742645 + 0 NA exon (ENSMUSG00000104292.1, exon 1 of 1) TEC-exon (ENSMUSG00000104292.1, exon 1 of 1) 4916 ENSMUSG00000104292.1 ENSMUSG00000104292 ENSMUST00000191614 Gm38042 TEC Interval_80369 chr18 40213419 40213845 + 0 NA intron (ENSMUSG00000024487.5, intron 1 of 1) protein_coding-intron (ENSMUSG00000024487.5, intron 2 of 5) 5711 ENSMUSG00000024487.5 ENSMUSG00000024487 ENSMUST00000237176 Yipf5 protein_coding Interval_74334 chr17 49035161 49035380 + 0 NA intron (ENSMUSG00000040490.4, intron 1 of 2) protein_coding-intron (ENSMUSG00000040490.4, intron 1 of 2) 61163 ENSMUSG00000105424.1 ENSMUSG00000105424 ENSMUST00000200509 Gm44304 miRNA Interval_159584 chr8 95613074 95613406 + 0 NA exon (ENSMUSG00000110447.1, exon 5 of 5) lincRNA-exon (ENSMUSG00000110447.1, exon 5 of 5) 11721 ENSMUSG00000110447.1 ENSMUSG00000110447 ENSMUST00000213069 Gm31518 lincRNA Interval_94657 chr2 93071744 93072075 + 0 NA Intergenic Intergenic 26335 ENSMUSG00000087559.1 ENSMUSG00000087559 ENSMUST00000150159 Gm13802 lincRNA Interval_23265 chr11 21011730 21012342 + 0 NA Intergenic Intergenic -74335 ENSMUSG00000096061.1 ENSMUSG00000096061 ENSMUST00000178821 Gm23681 miRNA Interval_142962 chr6 147388564 147388765 + 0 NA Intergenic Intergenic 83666 ENSMUSG00000072660.5 ENSMUSG00000072660 ENSMUST00000128634 Gm6288 antisense Interval_45088 chr13 52024467 52025448 + 0 NA Intergenic Intergenic -3030 ENSMUSG00000102173.1 ENSMUSG00000102173 ENSMUST00000192362 Gm37872 TEC Interval_161700 chr8 122149992 122150326 + 0 NA intron (ENSMUSG00000092329.1, intron 1 of 15) protein_coding-intron (ENSMUSG00000092329.1, intron 1 of 15) -108461 ENSMUSG00000043903.4 ENSMUSG00000043903 ENSMUST00000055537 Zfp469 protein_coding Interval_134874 chr6 32981341 32982498 + 0 NA intron (ENSMUSG00000053768.13, intron 3 of 7) protein_coding-intron (ENSMUSG00000053768.13, intron 3 of 7) -56549 ENSMUSG00000085847.1 ENSMUSG00000085847 ENSMUST00000138298 Gm14540 antisense Interval_6087 chr1 96624448 96626333 + 0 NA intron (ENSMUSG00000100589.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000100589.1, intron 1 of 2) 8291 ENSMUSG00000095610.1 ENSMUSG00000095610 ENSMUST00000178491 Gm26245 snRNA Interval_19978 chr10 111639484 111640532 + 0 NA Intergenic Intergenic 9804 ENSMUSG00000112357.1 ENSMUSG00000112357 ENSMUST00000217989 Gm47864 processed_pseudogene Interval_60978 chr15 78447767 78448477 + 0 NA intron (ENSMUSG00000016942.6, intron 10 of 17) protein_coding-intron (ENSMUSG00000016942.6, intron 10 of 17) -3743 ENSMUSG00000016942.6 ENSMUSG00000016942 ENSMUST00000229124 Tmprss6 protein_coding Interval_24590 chr11 34881730 34882131 + 0 NA intron (ENSMUSG00000085090.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000085090.1, intron 1 of 1) 1591 ENSMUSG00000085090.1 ENSMUSG00000085090 ENSMUST00000131249 Gm12711 lincRNA Interval_43488 chr13 31806126 31808767 + 0 NA exon (ENSMUSG00000050295.4, exon 1 of 1) protein_coding-exon (ENSMUSG00000050295.4, exon 1 of 1) 813 ENSMUSG00000050295.4 ENSMUSG00000050295 ENSMUST00000062292 Foxc1 protein_coding Interval_106007 chr3 90585602 90587853 + 0 NA promoter-TSS (ENSMUSG00000001021.13) protein_coding-promoter-TSS (ENSMUSG00000001021.13) 2068 ENSMUSG00000001021.13 ENSMUSG00000001021 ENSMUST00000196635 S100a3 protein_coding Interval_39343 chr12 86823662 86825616 + 0 NA Intergenic Intergenic 14682 ENSMUSG00000088403.1 ENSMUSG00000088403 ENSMUST00000157778 Gm25888 misc_RNA Interval_20593 chr10 119256552 119256885 + 0 NA Intergenic Intergenic -44109 ENSMUSG00000020114.12 ENSMUSG00000020114 ENSMUST00000126373 Cand1 protein_coding Interval_143605 chr7 13072278 13072963 + 0 NA Intergenic Intergenic -20240 ENSMUSG00000030380.17 ENSMUSG00000030380 ENSMUST00000183176 Mzf1 protein_coding Interval_8252 chr1 136739265 136740193 + 0 NA Intergenic Intergenic 17880 ENSMUSG00000096432.1 ENSMUSG00000096432 ENSMUST00000175316 Gm22132 miRNA Interval_133446 chr6 5119004 5120245 + 0 NA intron (ENSMUSG00000032827.15, intron 10 of 17) protein_coding-intron (ENSMUSG00000032827.15, intron 11 of 15) 74160 ENSMUSG00000002588.13 ENSMUSG00000002588 ENSMUST00000176933 Pon1 protein_coding Interval_125936 chr5 75962328 75962848 + 0 NA exon (ENSMUSG00000062960.10, exon 10 of 10) protein_coding-exon (ENSMUSG00000062960.10, exon 10 of 10) 15870 ENSMUSG00000062960.10 ENSMUSG00000062960 ENSMUST00000149573 Kdr protein_coding Interval_165345 chr9 46456475 46456708 + 0 NA Intergenic Intergenic 48482 ENSMUSG00000111115.1 ENSMUSG00000111115 ENSMUST00000214085 Gm47144 lincRNA Interval_143328 chr7 5441573 5441804 + 0 NA Intergenic Intergenic 14052 ENSMUSG00000117744.1 ENSMUSG00000117744 ENSMUST00000074132 Vmn1r59 protein_coding Interval_16467 chr10 63022992 63024811 + 0 NA promoter-TSS (ENSMUSG00000020072.15) protein_coding-promoter-TSS (ENSMUSG00000020072.15) -5817 ENSMUSG00000020069.16 ENSMUSG00000020069 ENSMUST00000119814 Hnrnph3 protein_coding Interval_113782 chr4 58560757 58561243 + 0 NA Intergenic Intergenic -12599 ENSMUSG00000038668.14 ENSMUSG00000038668 ENSMUST00000145361 Lpar1 protein_coding Interval_17875 chr10 80535094 80536343 + 0 NA exon (ENSMUSG00000003341.9, exon 4 of 4) protein_coding-exon (ENSMUSG00000003341.9, exon 4 of 4) 3406 ENSMUSG00000003341.9 ENSMUSG00000003341 ENSMUST00000219648 Atp8b3 protein_coding Interval_58482 chr15 35023596 35023833 + 0 NA intron (ENSMUSG00000022329.15, intron 6 of 10) protein_coding-intron (ENSMUSG00000022329.15, intron 6 of 10) -63477 ENSMUSG00000022329.15 ENSMUSG00000022329 ENSMUST00000138841 Stk3 protein_coding Interval_139010 chr6 94200290 94200512 + 0 NA intron (ENSMUSG00000045095.16, intron 2 of 2) protein_coding-intron (ENSMUSG00000045095.16, intron 1 of 21) 123633 ENSMUSG00000107545.1 ENSMUSG00000107545 ENSMUST00000204466 Gm44307 processed_pseudogene Interval_63793 chr15 103470192 103470499 + 0 NA intron (ENSMUSG00000022488.9, intron 9 of 29) protein_coding-intron (ENSMUSG00000022488.9, intron 9 of 30) -8803 ENSMUSG00000022488.9 ENSMUSG00000022488 ENSMUST00000230276 Nckap1l protein_coding Interval_75969 chr17 73963043 73963264 + 0 NA Intergenic Intergenic -29240 ENSMUSG00000117182.1 ENSMUSG00000117182 ENSMUST00000233795 Gm18068 processed_pseudogene Interval_84625 chr19 14505486 14506045 + 0 NA intron (ENSMUSG00000024642.17, intron 7 of 19) protein_coding-intron (ENSMUSG00000024642.17, intron 8 of 19) 89774 ENSMUSG00000024642.17 ENSMUSG00000024642 ENSMUST00000235975 Tle4 protein_coding Interval_10352 chr1 169917882 169918466 + 0 NA Intergenic Intergenic -11755 ENSMUSG00000070532.5 ENSMUSG00000070532 ENSMUST00000175731 Ccdc190 protein_coding Interval_171645 chr9 119920128 119920487 + 0 NA promoter-TSS (ENSMUSG00000032512.7) protein_coding-promoter-TSS (ENSMUSG00000032512.7) 6669 ENSMUSG00000032512.7 ENSMUSG00000032512 ENSMUST00000217492 Wdr48 protein_coding Interval_87418 chr19 49675538 49676353 + 0 NA Intergenic Intergenic 33927 ENSMUSG00000098507.1 ENSMUSG00000098507 ENSMUST00000183894 Gm27935 miRNA Interval_161608 chr8 121550767 121551548 + 0 NA exon (ENSMUSG00000052934.14, exon 9 of 9) protein_coding-exon (ENSMUSG00000052934.14, exon 9 of 9) 6769 ENSMUSG00000097424.2 ENSMUSG00000097424 ENSMUST00000181679 1700030M09Rik bidirectional_promoter_lncRNA Interval_116634 chr4 116187511 116188148 + 0 NA intron (ENSMUSG00000111410.1, intron 1 of 9) protein_coding-intron (ENSMUSG00000111410.1, intron 1 of 9) 11583 ENSMUSG00000085920.1 ENSMUSG00000085920 ENSMUST00000150216 Gm12951 lincRNA Interval_118608 chr4 132741323 132741704 + 0 NA exon (ENSMUSG00000028885.8, exon 4 of 8) protein_coding-exon (ENSMUSG00000028885.8, exon 4 of 8) -8985 ENSMUSG00000037752.4 ENSMUSG00000037752 ENSMUST00000143642 Xkr8 protein_coding Interval_83421 chr18 85081199 85081699 + 0 NA intron (ENSMUSG00000118198.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000118198.1, intron 1 of 1) 9613 ENSMUSG00000118198.1 ENSMUSG00000118198 ENSMUST00000237500 Gm50370 lincRNA Interval_1185 chr1 16702373 16703262 + 0 NA intron (ENSMUSG00000025779.10, intron 3 of 4) protein_coding-intron (ENSMUSG00000025779.10, intron 3 of 4) 14766 ENSMUSG00000025779.10 ENSMUSG00000025779 ENSMUST00000190366 Ly96 protein_coding Interval_135897 chr6 48536981 48538137 + 0 NA promoter-TSS (ENSMUSG00000039347.7) protein_coding-promoter-TSS (ENSMUSG00000039347.7) -79 ENSMUSG00000039347.7 ENSMUSG00000039347 ENSMUST00000203011 Atp6v0e2 protein_coding Interval_2895 chr1 48545542 48547199 + 0 NA Intergenic Intergenic 18731 ENSMUSG00000100866.1 ENSMUSG00000100866 ENSMUST00000188192 Gm28830 processed_pseudogene Interval_35581 chr12 25024972 25026570 + 0 NA intron (ENSMUSG00000036333.11, intron 1 of 3) protein_coding-intron (ENSMUSG00000036333.11, intron 22 of 31) -38921 ENSMUSG00000114148.1 ENSMUSG00000114148 ENSMUST00000220747 Gm47701 lincRNA Interval_120406 chr4 148415382 148416147 + 0 NA Intergenic Intergenic 27721 ENSMUSG00000064648.2 ENSMUSG00000064648 ENSMUST00000082714 Gm23303 snRNA Interval_26381 chr11 57518085 57519059 + 0 NA promoter-TSS (ENSMUSG00000020522.13) protein_coding-promoter-TSS (ENSMUSG00000020522.13) 30 ENSMUSG00000020523.14 ENSMUSG00000020523 ENSMUST00000130596 Fam114a2 protein_coding Interval_103096 chr3 35246107 35246823 + 0 NA Intergenic Intergenic 29666 ENSMUSG00000105651.1 ENSMUSG00000105651 ENSMUST00000198307 1700017M07Rik lincRNA Interval_127097 chr5 100284731 100285184 + 0 NA intron (ENSMUSG00000085915.1, intron 2 of 4) unprocessed_pseudogene-intron (ENSMUSG00000085915.1, intron 2 of 4) 70162 ENSMUSG00000085915.1 ENSMUSG00000085915 ENSMUST00000150506 Gm8091 unprocessed_pseudogene Interval_11687 chr1 184691225 184691481 + 0 NA Intergenic Intergenic -3681 ENSMUSG00000103314.1 ENSMUSG00000103314 ENSMUST00000195144 Gm38358 processed_pseudogene Interval_133403 chr6 4732765 4733920 + 0 NA intron (ENSMUSG00000004631.15, intron 1 of 10) protein_coding-intron (ENSMUSG00000004631.15, intron 1 of 10) 6865 ENSMUSG00000004631.15 ENSMUSG00000004631 ENSMUST00000204897 Sgce protein_coding Interval_25490 chr11 49187465 49188359 + 0 NA promoter-TSS (ENSMUSG00000040283.14) protein_coding-promoter-TSS (ENSMUSG00000040283.14) -875 ENSMUSG00000040283.14 ENSMUSG00000040283 ENSMUST00000128462 Btnl9 protein_coding Interval_133288 chr5 151218503 151219136 + 0 NA intron (ENSMUSG00000107011.1, intron 2 of 5) protein_coding-intron (ENSMUSG00000016128.14, intron 1 of 3) -33486 ENSMUSG00000107387.1 ENSMUSG00000107387 ENSMUST00000202597 5430435K18Rik lincRNA Interval_168859 chr9 88135367 88136368 + 0 NA Intergenic Intergenic -10102 ENSMUSG00000102075.2 ENSMUSG00000102075 ENSMUST00000189012 Gm5368 processed_pseudogene Interval_47568 chr13 89004756 89005481 + 0 NA intron (ENSMUSG00000034488.14, intron 3 of 5) protein_coding-intron (ENSMUSG00000034488.14, intron 2 of 9) 183630 ENSMUSG00000034488.14 ENSMUSG00000034488 ENSMUST00000043111 Edil3 protein_coding Interval_158322 chr8 81209542 81209949 + 0 NA Intergenic Intergenic -11397 ENSMUSG00000094615.2 ENSMUSG00000094615 ENSMUST00000178708 Gm4899 processed_pseudogene Interval_156311 chr8 47318406 47318961 + 0 NA intron (ENSMUSG00000038143.16, intron 7 of 7) protein_coding-intron (ENSMUSG00000038143.16, intron 1 of 4) -91517 ENSMUSG00000109606.1 ENSMUSG00000109606 ENSMUST00000211539 Gm45537 TEC Interval_88049 chr19 58437454 58437728 + 0 NA intron (ENSMUSG00000025089.15, intron 3 of 9) protein_coding-intron (ENSMUSG00000025089.15, intron 4 of 10) 16875 ENSMUSG00000025089.15 ENSMUSG00000025089 ENSMUST00000135730 Gfra1 protein_coding Interval_21107 chr10 126487594 126487866 + 0 NA Intergenic Intergenic 99074 ENSMUSG00000112435.1 ENSMUSG00000112435 ENSMUST00000220216 Gm47965 processed_pseudogene Interval_79159 chr18 25122034 25122528 + 0 NA intron (ENSMUSG00000034295.10, intron 22 of 24) protein_coding-intron (ENSMUSG00000034295.10, intron 24 of 26) 46413 ENSMUSG00000024269.11 ENSMUSG00000024269 ENSMUST00000115817 Tpgs2 protein_coding Interval_21748 chr11 4096222 4097474 + 0 NA TTS (ENSMUSG00000003585.13) protein_coding-TTS (ENSMUSG00000003585.13) -1708 ENSMUSG00000004748.5 ENSMUSG00000004748 ENSMUST00000123607 Mtfp1 protein_coding Interval_46385 chr13 64369724 64370875 + 0 NA promoter-TSS (ENSMUSG00000021477.9) protein_coding-promoter-TSS (ENSMUSG00000021477.9) 7 ENSMUSG00000021477.9 ENSMUSG00000021477 ENSMUST00000220617 Ctsl protein_coding Interval_112992 chr4 46664091 46666761 + 0 NA intron (ENSMUSG00000039809.10, intron 6 of 6) protein_coding-intron (ENSMUSG00000039809.10, intron 18 of 18) -15217 ENSMUSG00000039813.14 ENSMUSG00000039813 ENSMUST00000107750 Tbc1d2 protein_coding Interval_161460 chr8 120567560 120568307 + 0 NA exon (ENSMUSG00000031822.20, exon 6 of 16) protein_coding-exon (ENSMUSG00000031822.20, exon 6 of 16) 5310 ENSMUSG00000031822.20 ENSMUSG00000031822 ENSMUST00000141113 Gse1 protein_coding Interval_63565 chr15 102079131 102080749 + 0 NA intron (ENSMUSG00000058655.9, intron 1 of 8) protein_coding-intron (ENSMUSG00000058655.9, intron 1 of 14) 6076 ENSMUSG00000058655.9 ENSMUSG00000058655 ENSMUST00000229254 Eif4b protein_coding Interval_90933 chr2 33568784 33569916 + 0 NA intron (ENSMUSG00000038765.14, intron 2 of 7) protein_coding-intron (ENSMUSG00000038765.14, intron 2 of 7) -45048 ENSMUSG00000104403.1 ENSMUSG00000104403 ENSMUST00000193312 Gm38011 TEC Interval_71493 chr17 24139432 24139722 + 0 NA intron (ENSMUSG00000024122.16, intron 1 of 6) protein_coding-intron (ENSMUSG00000024122.16, intron 1 of 13) 7469 ENSMUSG00000117557.1 ENSMUSG00000117557 ENSMUST00000234329 Gm50070 sense_intronic Interval_63033 chr15 98747663 98748056 + 0 NA intron (ENSMUSG00000051853.10, intron 1 of 4) protein_coding-intron (ENSMUSG00000051853.10, intron 1 of 4) 15133 ENSMUSG00000051853.10 ENSMUSG00000051853 ENSMUST00000156572 Arf3 protein_coding Interval_173104 chrX 71791071 71791284 + 0 NA Intergenic Intergenic -12511 ENSMUSG00000083411.3 ENSMUSG00000083411 ENSMUST00000117119 Rpl30-ps10 processed_pseudogene Interval_19678 chr10 107799750 107800504 + 0 NA intron (ENSMUSG00000091455.4, intron 34 of 57) protein_coding-intron (ENSMUSG00000091455.4, intron 34 of 57) -80100 ENSMUSG00000035916.8 ENSMUSG00000035916 ENSMUST00000218399 Ptprq protein_coding Interval_98883 chr2 155756871 155757146 + 0 NA Intergenic Intergenic 5858 ENSMUSG00000027611.12 ENSMUSG00000027611 ENSMUST00000143493 Procr protein_coding Interval_4052 chr1 66895735 66896791 + 0 NA Intergenic Intergenic 29466 ENSMUSG00000077328.1 ENSMUSG00000077328 ENSMUST00000104140 Gm25832 snoRNA Interval_158348 chr8 82304279 82305219 + 0 NA Intergenic Intergenic 39724 ENSMUSG00000031712.10 ENSMUSG00000031712 ENSMUST00000210472 Il15 protein_coding Interval_169008 chr9 90170800 90171960 + 0 NA intron (ENSMUSG00000032363.15, intron 1 of 23) protein_coding-intron (ENSMUSG00000032363.15, intron 1 of 23) 8302 ENSMUSG00000032363.15 ENSMUSG00000032363 ENSMUST00000124441 Adamts7 protein_coding Interval_27074 chr11 62694991 62695503 + 0 NA Intergenic Intergenic -1971 ENSMUSG00000081852.1 ENSMUSG00000081852 ENSMUST00000119536 Gm12281 processed_pseudogene Interval_135654 chr6 42356926 42357835 + 0 NA exon (ENSMUSG00000029860.16, exon 8 of 9) protein_coding-exon (ENSMUSG00000029860.16, exon 8 of 9) 2243 ENSMUSG00000029860.16 ENSMUSG00000029860 ENSMUST00000204480 Zyx protein_coding Interval_73036 chr17 34287676 34288050 + 0 NA promoter-TSS (ENSMUSG00000036594.15) protein_coding-promoter-TSS (ENSMUSG00000036594.15) -72 ENSMUSG00000036594.15 ENSMUSG00000036594 ENSMUST00000165139 H2-Aa protein_coding Interval_88863 chr2 11771560 11771792 + 0 NA intron (ENSMUSG00000058594.15, intron 1 of 3) protein_coding-intron (ENSMUSG00000058594.15, intron 1 of 20) 5874 ENSMUSG00000058594.15 ENSMUSG00000058594 ENSMUST00000151402 Fbh1 protein_coding Interval_145912 chr7 41632724 41633958 + 0 NA promoter-TSS (ENSMUSG00000074165.10) protein_coding-promoter-TSS (ENSMUSG00000074165.10) -14243 ENSMUSG00000074165.10 ENSMUSG00000074165 ENSMUST00000170770 Zfp788 protein_coding Interval_141879 chr6 135078348 135079227 + 0 NA exon (ENSMUSG00000046733.7, exon 2 of 4) protein_coding-exon (ENSMUSG00000046733.7, exon 2 of 4) 13136 ENSMUSG00000046733.7 ENSMUSG00000046733 ENSMUST00000050104 Gprc5a protein_coding Interval_98927 chr2 156075317 156075559 + 0 NA intron (ENSMUSG00000074643.12, intron 12 of 14) protein_coding-intron (ENSMUSG00000074643.12, intron 13 of 15) 841 ENSMUSG00000074643.12 ENSMUSG00000074643 ENSMUST00000184152 Cpne1 protein_coding Interval_46516 chr13 66770541 66771366 + 0 NA Intergenic Intergenic -6488 ENSMUSG00000114226.1 ENSMUSG00000114226 ENSMUST00000223696 Gm48412 lincRNA Interval_51547 chr14 30034774 30035141 + 0 NA intron (ENSMUSG00000015970.19, intron 5 of 7) protein_coding-intron (ENSMUSG00000015970.19, intron 5 of 7) -6606 ENSMUSG00000114705.1 ENSMUSG00000114705 ENSMUST00000225370 Gm18760 processed_pseudogene Interval_16260 chr10 61769081 61769489 + 0 NA intron (ENSMUSG00000020086.6, intron 1 of 8) protein_coding-intron (ENSMUSG00000020086.6, intron 1 of 8) -5452 ENSMUSG00000093017.1 ENSMUSG00000093017 ENSMUST00000175276 Mir5108 miRNA Interval_57564 chr15 12385174 12385985 + 0 NA exon (ENSMUSG00000022197.16, exon 17 of 24) protein_coding-exon (ENSMUSG00000022197.16, exon 17 of 24) 26801 ENSMUSG00000022197.16 ENSMUSG00000022197 ENSMUST00000189746 Pdzd2 protein_coding Interval_100623 chr2 170527571 170527883 + 0 NA Intergenic Intergenic -15800 ENSMUSG00000085495.1 ENSMUSG00000085495 ENSMUST00000126086 Gm16796 antisense Interval_46115 chr13 61826813 61828115 + 0 NA TTS (ENSMUSG00000113626.1) transcribed_processed_pseudogene-TTS (ENSMUSG00000113626.1) -3800 ENSMUSG00000080451.1 ENSMUSG00000080451 ENSMUST00000116801 Gm24193 miRNA Interval_57170 chr15 7128784 7130112 + 0 NA promoter-TSS (ENSMUSG00000054263.12) protein_coding-promoter-TSS (ENSMUSG00000054263.12) 38834 ENSMUSG00000054263.12 ENSMUSG00000054263 ENSMUST00000171588 Lifr protein_coding Interval_162077 chr8 124917205 124918049 + 0 NA intron (ENSMUSG00000031987.6, intron 1 of 4) protein_coding-intron (ENSMUSG00000031987.6, intron 1 of 4) 15812 ENSMUSG00000031986.6 ENSMUSG00000031986 ENSMUST00000212724 Sprtn protein_coding Interval_155248 chr8 28768039 28769348 + 0 NA intron (ENSMUSG00000063626.6, intron 4 of 14) protein_coding-intron (ENSMUSG00000063626.6, intron 4 of 17) 175161 ENSMUSG00000097776.1 ENSMUSG00000097776 ENSMUST00000181267 Gm26795 lincRNA Interval_11816 chr1 185684638 185684832 + 0 NA Intergenic Intergenic -60068 ENSMUSG00000103799.1 ENSMUSG00000103799 ENSMUST00000195210 Gm38093 lincRNA Interval_149413 chr7 98289749 98290249 + 0 NA intron (ENSMUSG00000030760.14, intron 1 of 10) protein_coding-intron (ENSMUSG00000030760.14, intron 1 of 10) -63111 ENSMUSG00000030760.14 ENSMUSG00000030760 ENSMUST00000137899 Acer3 protein_coding Interval_8992 chr1 152966124 152966990 + 0 NA intron (ENSMUSG00000042751.14, intron 1 of 4) protein_coding-intron (ENSMUSG00000042751.14, intron 1 of 10) -16460 ENSMUSG00000100702.1 ENSMUSG00000100702 ENSMUST00000187136 Gm8976 processed_pseudogene Interval_169279 chr9 96102951 96103403 + 0 NA Intergenic Intergenic -62504 ENSMUSG00000100931.1 ENSMUSG00000100931 ENSMUST00000189281 Gm28085 antisense Interval_34872 chr12 12873276 12874027 + 0 NA intron (ENSMUSG00000113363.1, intron 4 of 4) lincRNA-intron (ENSMUSG00000113363.1, intron 4 of 4) 8081 ENSMUSG00000113363.1 ENSMUSG00000113363 ENSMUST00000221441 Gm48187 lincRNA Interval_127380 chr5 103602925 103603541 + 0 NA TTS (ENSMUSG00000088474.1) misc_RNA-TTS (ENSMUSG00000088474.1) 646 ENSMUSG00000088474.1 ENSMUSG00000088474 ENSMUST00000157849 Gm23085 misc_RNA Interval_17795 chr10 80136692 80137402 + 0 NA TTS (ENSMUSG00000035640.18) protein_coding-TTS (ENSMUSG00000035640.18) 340 ENSMUSG00000035640.18 ENSMUSG00000035640 ENSMUST00000142853 Cbarp protein_coding Interval_35113 chr12 17393145 17393553 + 0 NA intron (ENSMUSG00000061458.9, intron 13 of 20) protein_coding-intron (ENSMUSG00000061458.9, intron 13 of 20) 37957 ENSMUSG00000093037.1 ENSMUSG00000093037 ENSMUST00000175296 Mir3066 miRNA Interval_8494 chr1 140169848 140170062 + 0 NA intron (ENSMUSG00000026365.15, intron 1 of 12) protein_coding-intron (ENSMUSG00000026365.15, intron 1 of 21) 13809 ENSMUSG00000026365.15 ENSMUSG00000026365 ENSMUST00000194688 Cfh protein_coding Interval_89267 chr2 18671899 18673049 + 0 NA promoter-TSS (ENSMUSG00000051154.11) protein_coding-promoter-TSS (ENSMUSG00000051154.11) 90 ENSMUSG00000051154.11 ENSMUSG00000051154 ENSMUST00000151230 Commd3 protein_coding Interval_112897 chr4 45875533 45875732 + 0 NA exon (ENSMUSG00000028327.14, exon 1 of 7) protein_coding-exon (ENSMUSG00000028327.14, exon 1 of 7) 1421 ENSMUSG00000028327.14 ENSMUSG00000028327 ENSMUST00000165478 Stra6l protein_coding Interval_120305 chr4 145313969 145315579 + 0 NA intron (ENSMUSG00000028602.12, intron 1 of 12) protein_coding-intron (ENSMUSG00000028602.12, intron 1 of 12) 390 ENSMUSG00000028602.12 ENSMUSG00000028602 ENSMUST00000123027 Tnfrsf8 protein_coding Interval_26805 chr11 60719767 60720486 + 0 NA promoter-TSS (ENSMUSG00000002812.4) protein_coding-promoter-TSS (ENSMUSG00000002812.4) 15 ENSMUSG00000002812.4 ENSMUSG00000002812 ENSMUST00000137226 Flii protein_coding Interval_5830 chr1 92316215 92317709 + 0 NA Intergenic Intergenic -7548 ENSMUSG00000101265.1 ENSMUSG00000101265 ENSMUST00000187370 Gm29099 lincRNA Interval_119861 chr4 140550274 140551098 + 0 NA intron (ENSMUSG00000040964.16, intron 8 of 15) protein_coding-intron (ENSMUSG00000040964.16, intron 21 of 27) 66379 ENSMUSG00000040964.16 ENSMUSG00000040964 ENSMUST00000154979 Arhgef10l protein_coding Interval_8266 chr1 136838755 136839840 + 0 NA Intergenic Intergenic -40338 ENSMUSG00000104261.1 ENSMUSG00000104261 ENSMUST00000195232 Gm17781 processed_pseudogene Interval_87427 chr19 50064950 50065306 + 0 NA Intergenic Intergenic -34393 ENSMUSG00000062083.1 ENSMUSG00000062083 ENSMUST00000071866 Rpl13a-ps1 processed_pseudogene Interval_54447 chr14 69816235 69816596 + 0 NA Intergenic Intergenic -11190 ENSMUSG00000022075.7 ENSMUSG00000022075 ENSMUST00000225088 Rhobtb2 protein_coding Interval_139573 chr6 101376765 101378603 + 0 NA promoter-TSS (ENSMUSG00000035357.17) protein_coding-promoter-TSS (ENSMUSG00000035357.17) -28854 ENSMUSG00000107720.1 ENSMUSG00000107720 ENSMUST00000204058 Gm43946 TEC Interval_32274 chr11 106646495 106647254 + 0 NA Intergenic Intergenic 16452 ENSMUSG00000020717.19 ENSMUSG00000020717 ENSMUST00000124958 Pecam1 protein_coding Interval_168856 chr9 88098248 88098454 + 0 NA Intergenic Intergenic 24414 ENSMUSG00000099886.1 ENSMUSG00000099886 ENSMUST00000187464 Gm2324 processed_pseudogene Interval_63126 chr15 99233974 99235573 + 0 NA intron (ENSMUSG00000037579.7, intron 10 of 14) protein_coding-intron (ENSMUSG00000037579.7, intron 10 of 14) -3132 ENSMUSG00000037579.7 ENSMUSG00000037579 ENSMUST00000230552 Kcnh3 protein_coding Interval_44111 chr13 40951428 40952233 + 0 NA intron (ENSMUSG00000021360.16, intron 1 of 1) protein_coding-intron (ENSMUSG00000021360.16, intron 1 of 2) -1585 ENSMUSG00000021360.16 ENSMUSG00000021360 ENSMUST00000225996 Gcnt2 protein_coding Interval_101262 chr2 179945286 179945796 + 0 NA intron (ENSMUSG00000039117.16, intron 1 of 14) protein_coding-intron (ENSMUSG00000039117.16, intron 1 of 14) -30452 ENSMUSG00000085704.1 ENSMUSG00000085704 ENSMUST00000150145 4921531C22Rik processed_transcript Interval_43689 chr13 35035904 35036350 + 0 NA Intergenic Intergenic -4181 ENSMUSG00000114061.1 ENSMUSG00000114061 ENSMUST00000220872 Gm48626 lincRNA Interval_117855 chr4 126642126 126642653 + 0 NA Intergenic Intergenic -22865 ENSMUSG00000081210.1 ENSMUSG00000081210 ENSMUST00000120203 Gm12933 processed_pseudogene Interval_41445 chr12 114064569 114065010 + 0 NA Intergenic Intergenic -4468 ENSMUSG00000095642.3 ENSMUSG00000095642 ENSMUST00000103469 Ighv14-3 IG_V_gene Interval_141382 chr6 127855834 127856238 + 0 NA Intergenic Intergenic 6815 ENSMUSG00000088177.1 ENSMUSG00000088177 ENSMUST00000157552 Gm23098 misc_RNA Interval_111547 chr4 22827477 22828236 + 0 NA Intergenic Intergenic 80725 ENSMUSG00000088809.1 ENSMUSG00000088809 ENSMUST00000158184 Gm24078 miRNA Interval_39496 chr12 88579665 88580454 + 0 NA Intergenic Intergenic 10378 ENSMUSG00000113213.1 ENSMUSG00000113213 ENSMUST00000221843 Gm19540 processed_pseudogene Interval_149441 chr7 98550361 98551251 + 0 NA intron (ENSMUSG00000055446.5, intron 1 of 1) lincRNA-intron (ENSMUSG00000055446.5, intron 1 of 1) 12184 ENSMUSG00000055446.5 ENSMUSG00000055446 ENSMUST00000069035 A630091E08Rik lincRNA Interval_17778 chr10 80028108 80028797 + 0 NA intron (ENSMUSG00000035697.14, intron 11 of 14) protein_coding-intron (ENSMUSG00000035697.14, intron 18 of 21) 6709 ENSMUSG00000035697.14 ENSMUSG00000035697 ENSMUST00000150022 Arhgap45 protein_coding Interval_115007 chr4 88390911 88391360 + 0 NA intron (ENSMUSG00000038368.16, intron 33 of 41) protein_coding-intron (ENSMUSG00000038368.16, intron 35 of 43) -9215 ENSMUSG00000038368.16 ENSMUSG00000038368 ENSMUST00000107147 Focad protein_coding Interval_23542 chr11 23274324 23274768 + 0 NA intron (ENSMUSG00000020290.14, intron 5 of 12) protein_coding-intron (ENSMUSG00000020290.14, intron 5 of 25) -10098 ENSMUSG00000020290.14 ENSMUSG00000020290 ENSMUST00000150750 Xpo1 protein_coding Interval_85415 chr19 25604866 25606769 + 0 NA Intergenic Intergenic -4484 ENSMUSG00000042372.5 ENSMUSG00000042372 ENSMUST00000048935 Dmrt3 protein_coding Interval_33364 chr11 116130226 116131325 + 0 NA exon (ENSMUSG00000054517.9, exon 1 of 6) protein_coding-exon (ENSMUSG00000054517.9, exon 1 of 6) 353 ENSMUSG00000054517.9 ENSMUSG00000054517 ENSMUST00000154061 Trim65 protein_coding Interval_20959 chr10 122784016 122784699 + 0 NA intron (ENSMUSG00000034613.12, intron 2 of 5) protein_coding-intron (ENSMUSG00000034613.12, intron 2 of 9) -6292 ENSMUSG00000111957.1 ENSMUSG00000111957 ENSMUST00000218987 Gm47582 TEC Interval_67087 chr16 42799987 42800343 + 0 NA intron (ENSMUSG00000075070.6, intron 1 of 1) lincRNA-intron (ENSMUSG00000075070.6, intron 1 of 1) 75575 ENSMUSG00000075070.6 ENSMUSG00000075070 ENSMUST00000130331 4932412D23Rik lincRNA Interval_14103 chr10 27135867 27136107 + 0 NA intron (ENSMUSG00000019899.17, intron 33 of 64) protein_coding-intron (ENSMUSG00000019899.17, intron 33 of 64) 76267 ENSMUSG00000019899.17 ENSMUSG00000019899 ENSMUST00000187535 Lama2 protein_coding Interval_88035 chr19 58173027 58173318 + 0 NA Intergenic Intergenic -30967 ENSMUSG00000087002.1 ENSMUSG00000087002 ENSMUST00000143595 Gm16277 antisense Interval_112318 chr4 40334442 40335450 + 0 NA Intergenic Intergenic 21714 ENSMUSG00000087137.1 ENSMUSG00000087137 ENSMUST00000144039 4930509K18Rik lincRNA Interval_51781 chr14 32170873 32171157 + 0 NA intron (ENSMUSG00000056234.15, intron 1 of 3) protein_coding-intron (ENSMUSG00000056234.15, intron 2 of 9) -5717 ENSMUSG00000056234.15 ENSMUSG00000056234 ENSMUST00000228779 Ncoa4 protein_coding Interval_154958 chr8 25274142 25275563 + 0 NA Intergenic Intergenic 31418 ENSMUSG00000110140.1 ENSMUSG00000110140 ENSMUST00000209774 5430421F17Rik lincRNA Interval_81443 chr18 60778876 60780573 + 0 NA promoter-TSS (ENSMUSG00000080779.1) processed_pseudogene-promoter-TSS (ENSMUSG00000080779.1) -330 ENSMUSG00000080779.1 ENSMUSG00000080779 ENSMUST00000118088 Gm8731 processed_pseudogene Interval_91192 chr2 35783364 35784089 + 0 NA TTS (ENSMUSG00000026885.13) protein_coding-TTS (ENSMUSG00000026885.13) -17847 ENSMUSG00000107106.1 ENSMUSG00000107106 ENSMUST00000202120 Gm43760 TEC Interval_73351 chr17 36484244 36484542 + 0 NA Intergenic Intergenic -15967 ENSMUSG00000092290.1 ENSMUSG00000092290 ENSMUST00000174686 Gm20452 unprocessed_pseudogene Interval_112533 chr4 42928368 42928771 + 0 NA intron (ENSMUSG00000036062.13, intron 1 of 1) protein_coding-intron (ENSMUSG00000036062.13, intron 1 of 8) 11909 ENSMUSG00000036062.13 ENSMUSG00000036062 ENSMUST00000131234 Phf24 protein_coding Interval_165258 chr9 45833241 45833917 + 0 NA Intergenic Intergenic 3356 ENSMUSG00000098194.1 ENSMUSG00000098194 ENSMUST00000182691 Gm7286 processed_pseudogene Interval_131384 chr5 136836559 136837544 + 0 NA exon (ENSMUSG00000004415.15, exon 1 of 1) protein_coding-exon (ENSMUSG00000004415.15, exon 1 of 1) 1258 ENSMUSG00000004415.15 ENSMUSG00000004415 ENSMUST00000140245 Col26a1 protein_coding Interval_56500 chr14 119248012 119248950 + 0 NA intron (ENSMUSG00000053465.6, intron 1 of 1) protein_coding-intron (ENSMUSG00000053465.6, intron 1 of 1) -29943 ENSMUSG00000115684.1 ENSMUSG00000115684 ENSMUST00000227446 Gm6087 processed_pseudogene Interval_75713 chr17 70817405 70818788 + 0 NA exon (ENSMUSG00000003279.17, exon 15 of 15) protein_coding-exon (ENSMUSG00000003279.17, exon 15 of 15) 9024 ENSMUSG00000003279.17 ENSMUSG00000003279 ENSMUST00000233780 Dlgap1 protein_coding Interval_137502 chr6 72779185 72779809 + 0 NA intron (ENSMUSG00000055799.13, intron 2 of 5) protein_coding-intron (ENSMUSG00000055799.13, intron 3 of 11) -27583 ENSMUSG00000104501.1 ENSMUSG00000104501 ENSMUST00000193564 Gm37736 TEC Interval_102935 chr3 32937272 32938239 + 0 NA exon (ENSMUSG00000056900.13, exon 21 of 21) protein_coding-exon (ENSMUSG00000056900.13, exon 21 of 21) -36921 ENSMUSG00000104283.1 ENSMUSG00000104283 ENSMUST00000195007 Gm37459 antisense Interval_151050 chr7 118178438 118178652 + 0 NA intron (ENSMUSG00000030655.15, intron 25 of 60) protein_coding-intron (ENSMUSG00000030655.15, intron 27 of 62) 13746 ENSMUSG00000030655.15 ENSMUSG00000030655 ENSMUST00000179847 Smg1 protein_coding Interval_66384 chr16 33508083 33508321 + 0 NA Intergenic Intergenic -108188 ENSMUSG00000035506.16 ENSMUSG00000035506 ENSMUST00000149291 Slc12a8 protein_coding Interval_98849 chr2 155562892 155563622 + 0 NA TTS (ENSMUSG00000027605.18) protein_coding-TTS (ENSMUSG00000027605.18) -5293 ENSMUSG00000027605.18 ENSMUSG00000027605 ENSMUST00000148870 Acss2 protein_coding Interval_84395 chr19 10604901 10606156 + 0 NA promoter-TSS (ENSMUSG00000034371.9) protein_coding-promoter-TSS (ENSMUSG00000034371.9) -96 ENSMUSG00000034371.9 ENSMUSG00000034371 ENSMUST00000236478 Tkfc protein_coding Interval_45371 chr13 54693459 54694901 + 0 NA promoter-TSS (ENSMUSG00000034928.16) protein_coding-promoter-TSS (ENSMUSG00000034928.16) -6372 ENSMUSG00000034928.16 ENSMUSG00000034928 ENSMUST00000150626 Rnf44 protein_coding Interval_145537 chr7 35455893 35456105 + 0 NA TTS (ENSMUSG00000030492.16) protein_coding-TTS (ENSMUSG00000030492.16) 6899 ENSMUSG00000030492.16 ENSMUSG00000030492 ENSMUST00000141245 Slc7a9 protein_coding Interval_904 chr1 13079434 13079744 + 0 NA TTS (ENSMUSG00000099498.1) lincRNA-TTS (ENSMUSG00000099498.1) 10751 ENSMUSG00000099498.1 ENSMUSG00000099498 ENSMUST00000187394 Gm29283 lincRNA Interval_95034 chr2 103360476 103361648 + 0 NA TTS (ENSMUSG00000102686.1) TEC-TTS (ENSMUSG00000102686.1) 3676 ENSMUSG00000102686.1 ENSMUSG00000102686 ENSMUST00000195179 Gm37220 TEC Interval_53614 chr14 60110230 60110462 + 0 NA intron (ENSMUSG00000021983.16, intron 1 of 6) protein_coding-intron (ENSMUSG00000021983.16, intron 1 of 6) 22829 ENSMUSG00000086112.1 ENSMUSG00000086112 ENSMUST00000154835 4930563I02Rik antisense Interval_29204 chr11 81518388 81519063 + 0 NA intron (ENSMUSG00000020704.13, intron 1 of 9) protein_coding-intron (ENSMUSG00000020704.13, intron 1 of 9) 54748 ENSMUSG00000080980.1 ENSMUSG00000080980 ENSMUST00000117522 1700071K01Rik processed_pseudogene Interval_40770 chr12 108259625 108259891 + 0 NA intron (ENSMUSG00000084883.2, intron 1 of 5) protein_coding-intron (ENSMUSG00000084883.2, intron 1 of 6) 15667 ENSMUSG00000084883.2 ENSMUSG00000084883 ENSMUST00000136175 Ccdc85c protein_coding Interval_50439 chr14 13236629 13237398 + 0 NA intron (ENSMUSG00000051729.12, intron 2 of 3) processed_transcript-intron (ENSMUSG00000051729.12, intron 2 of 3) -47828 ENSMUSG00000056296.17 ENSMUSG00000056296 ENSMUST00000112656 Synpr protein_coding Interval_138862 chr6 92736882 92737137 + 0 NA Intergenic Intergenic -90623 ENSMUSG00000048636.7 ENSMUSG00000048636 ENSMUST00000133858 A730049H05Rik protein_coding Interval_16432 chr10 62847164 62847849 + 0 NA intron (ENSMUSG00000047146.17, intron 3 of 12) protein_coding-intron (ENSMUSG00000047146.17, intron 2 of 10) 12488 ENSMUSG00000112309.1 ENSMUSG00000112309 ENSMUST00000220243 Gm48353 TEC Interval_13491 chr10 18633998 18635652 + 0 NA exon (ENSMUSG00000019852.7, exon 14 of 33) protein_coding-exon (ENSMUSG00000019852.7, exon 14 of 33) -68870 ENSMUSG00000111173.1 ENSMUSG00000111173 ENSMUST00000215943 Gm48297 processed_pseudogene Interval_126391 chr5 87860973 87861548 + 0 NA Intergenic Intergenic 10901 ENSMUSG00000067156.5 ENSMUSG00000067156 ENSMUST00000180954 Gm7337 transcribed_processed_pseudogene Interval_41662 chr12 117512610 117513544 + 0 NA Intergenic Intergenic -61265 ENSMUSG00000089482.1 ENSMUSG00000089482 ENSMUST00000158857 Gm24741 rRNA Interval_150103 chr7 106533659 106533827 + 0 NA Intergenic Intergenic -26015 ENSMUSG00000063286.7 ENSMUSG00000063286 ENSMUST00000184842 Gm8995 transcribed_unprocessed_pseudogene Interval_45214 chr13 53225655 53226488 + 0 NA intron (ENSMUSG00000021464.14, intron 1 of 8) protein_coding-intron (ENSMUSG00000021464.14, intron 1 of 8) 49587 ENSMUSG00000021464.14 ENSMUSG00000021464 ENSMUST00000149299 Ror2 protein_coding Interval_25095 chr11 43835950 43837074 + 0 NA promoter-TSS (ENSMUSG00000050541.14) protein_coding-promoter-TSS (ENSMUSG00000050541.14) -180 ENSMUSG00000050541.14 ENSMUSG00000050541 ENSMUST00000139906 Adra1b protein_coding Interval_68536 chr16 78483231 78483879 + 0 NA Intergenic Intergenic -3016 ENSMUSG00000116539.1 ENSMUSG00000116539 ENSMUST00000231464 Gm49603 TEC Interval_1490 chr1 24099502 24100803 + 0 NA promoter-TSS (ENSMUSG00000026153.15) protein_coding-promoter-TSS (ENSMUSG00000026153.15) -473 ENSMUSG00000102398.1 ENSMUSG00000102398 ENSMUST00000192408 Gm37580 TEC Interval_30744 chr11 96227809 96228040 + 0 NA Intergenic Intergenic -20709 ENSMUSG00000083337.1 ENSMUSG00000083337 ENSMUST00000119837 Gm11539 processed_pseudogene Interval_161668 chr8 121920430 121920683 + 0 NA TTS (ENSMUSG00000074052.7) bidirectional_promoter_lncRNA-TTS (ENSMUSG00000074052.7) 6918 ENSMUSG00000025317.7 ENSMUSG00000025317 ENSMUST00000151462 Car5a protein_coding Interval_92756 chr2 65158365 65158705 + 0 NA intron (ENSMUSG00000034903.18, intron 2 of 7) protein_coding-intron (ENSMUSG00000034903.18, intron 1 of 12) -80221 ENSMUSG00000086881.1 ENSMUSG00000086881 ENSMUST00000137582 Gm13594 antisense Interval_172905 chrX 53058569 53058778 + 0 NA Intergenic Intergenic -1483 ENSMUSG00000087365.7 ENSMUSG00000087365 ENSMUST00000151099 C430049B03Rik processed_transcript Interval_29426 chr11 83926796 83928511 + 0 NA Intergenic Intergenic -18602 ENSMUSG00000020677.7 ENSMUSG00000020677 ENSMUST00000130982 Ddx52 protein_coding Interval_106274 chr3 95060630 95061031 + 0 NA intron (ENSMUSG00000028126.16, intron 13 of 14) protein_coding-intron (ENSMUSG00000028126.16, intron 13 of 14) 22402 ENSMUSG00000028126.16 ENSMUSG00000028126 ENSMUST00000107229 Pip5k1a protein_coding Interval_47534 chr13 86801723 86802245 + 0 NA Intergenic Intergenic -76052 ENSMUSG00000095933.1 ENSMUSG00000095933 ENSMUST00000177693 Gm25700 miRNA Interval_78607 chr18 15134254 15134924 + 0 NA intron (ENSMUSG00000036225.15, intron 1 of 4) protein_coding-intron (ENSMUSG00000036225.15, intron 1 of 4) -60193 ENSMUSG00000117613.1 ENSMUSG00000117613 ENSMUST00000235045 Gm2629 lincRNA Interval_79692 chr18 34558582 34559928 + 0 NA Intergenic Intergenic 16942 ENSMUSG00000012282.2 ENSMUSG00000012282 ENSMUST00000012426 Wnt8a protein_coding Interval_41406 chr12 113421706 113422562 + 0 NA exon (ENSMUSG00000076617.9, exon 2 of 4) IG_C_gene-exon (ENSMUSG00000076617.9, exon 2 of 4) 596 ENSMUSG00000076617.9 ENSMUSG00000076617 ENSMUST00000103426 Ighm IG_C_gene Interval_31321 chr11 99837458 99838418 + 0 NA exon (ENSMUSG00000078257.2, exon 1 of 1) protein_coding-exon (ENSMUSG00000078257.2, exon 1 of 1) 128 ENSMUSG00000078257.2 ENSMUSG00000078257 ENSMUST00000105054 2300003K06Rik protein_coding Interval_40210 chr12 102569033 102570452 + 0 NA exon (ENSMUSG00000057963.9, exon 10 of 10) protein_coding-exon (ENSMUSG00000057963.9, exon 10 of 10) 11674 ENSMUSG00000021194.6 ENSMUSG00000021194 ENSMUST00000223100 Chga protein_coding Interval_103100 chr3 35323597 35324378 + 0 NA Intergenic Intergenic -1627 ENSMUSG00000093499.1 ENSMUSG00000093499 ENSMUST00000177270 Gm25442 miRNA Interval_124984 chr5 63321148 63321396 + 0 NA Intergenic Intergenic 329622 ENSMUSG00000104868.1 ENSMUSG00000104868 ENSMUST00000067917 Gm9954 TEC Interval_118919 chr4 134453644 134454271 + 0 NA Intergenic Intergenic -3786 ENSMUSG00000087343.1 ENSMUSG00000087343 ENSMUST00000131110 1700021N21Rik antisense Interval_84580 chr19 13119528 13120835 + 0 NA Intergenic Intergenic -13406 ENSMUSG00000062844.6 ENSMUSG00000062844 ENSMUST00000076729 Olfr1458 protein_coding Interval_170976 chr9 113435865 113436161 + 0 NA Intergenic Intergenic 15902 ENSMUSG00000111199.1 ENSMUSG00000111199 ENSMUST00000216389 Gm47875 lincRNA Interval_154686 chr8 22601834 22602702 + 0 NA Intergenic Intergenic -16147 ENSMUSG00000008892.12 ENSMUSG00000008892 ENSMUST00000211222 Vdac3 protein_coding Interval_6823 chr1 119894581 119895254 + 0 NA Intergenic Intergenic -2544 ENSMUSG00000100636.1 ENSMUSG00000100636 ENSMUST00000190750 Gm3551 processed_pseudogene Interval_75732 chr17 70918627 70918971 + 0 NA intron (ENSMUSG00000097154.2, intron 1 of 2) lincRNA-intron (ENSMUSG00000097154.2, intron 1 of 2) 7733 ENSMUSG00000117156.1 ENSMUSG00000117156 ENSMUST00000233140 Gm49904 processed_pseudogene Interval_56775 chr14 122021409 122021714 + 0 NA TTS (ENSMUSG00000041765.6) protein_coding-TTS (ENSMUSG00000041765.6) -13113 ENSMUSG00000071229.3 ENSMUSG00000071229 ENSMUST00000045976 Timm8a2 protein_coding Interval_119422 chr4 137563964 137564984 + 0 NA exon (ENSMUSG00000028763.18, exon 87 of 97) protein_coding-exon (ENSMUSG00000028763.18, exon 87 of 97) 17630 ENSMUSG00000094035.3 ENSMUSG00000094035 ENSMUST00000238941 Ldlrad2 protein_coding Interval_114407 chr4 75402510 75403162 + 0 NA Intergenic Intergenic 22076 ENSMUSG00000084026.1 ENSMUSG00000084026 ENSMUST00000120554 Gm11259 processed_pseudogene Interval_49742 chr13 114397137 114399795 + 0 NA Intergenic Intergenic -10416 ENSMUSG00000021764.8 ENSMUSG00000021764 ENSMUST00000225978 Ndufs4 protein_coding Interval_67837 chr16 57599799 57600579 + 0 NA intron (ENSMUSG00000022748.8, intron 1 of 1) protein_coding-intron (ENSMUSG00000022748.8, intron 1 of 9) 6675 ENSMUSG00000022748.8 ENSMUSG00000022748 ENSMUST00000232413 Cmss1 protein_coding Interval_123303 chr5 31240550 31241830 + 0 NA promoter-TSS (ENSMUSG00000055424.4) antisense-promoter-TSS (ENSMUSG00000055424.4) 42 ENSMUSG00000055424.4 ENSMUSG00000055424 ENSMUST00000068997 Gm9970 antisense Interval_35201 chr12 18067952 18068604 + 0 NA Intergenic Intergenic 6311 ENSMUSG00000113642.1 ENSMUSG00000113642 ENSMUST00000222523 Gm49329 transcribed_unprocessed_pseudogene Interval_147708 chr7 72342591 72343067 + 0 NA Intergenic Intergenic -113469 ENSMUSG00000032776.9 ENSMUSG00000032776 ENSMUST00000206755 Mctp2 protein_coding Interval_87607 chr19 53710963 53712079 + 0 NA intron (ENSMUSG00000043639.15, intron 1 of 13) protein_coding-intron (ENSMUSG00000043639.15, intron 1 of 13) 34215 ENSMUSG00000043639.15 ENSMUSG00000043639 ENSMUST00000161856 Rbm20 protein_coding Interval_153514 chr7 145324893 145326374 + 0 NA Intergenic Intergenic 10798 ENSMUSG00000051207.7 ENSMUSG00000051207 ENSMUST00000062163 Mrgprd protein_coding Interval_118489 chr4 131996836 131997417 + 0 NA intron (ENSMUSG00000028906.17, intron 5 of 14) protein_coding-intron (ENSMUSG00000028906.17, intron 5 of 20) -4837 ENSMUSG00000098577.1 ENSMUSG00000098577 ENSMUST00000184484 Gm27445 miRNA Interval_169195 chr9 95451407 95451663 + 0 NA Intergenic Intergenic 25905 ENSMUSG00000101459.1 ENSMUSG00000101459 ENSMUST00000190263 Gm19193 processed_pseudogene Interval_35363 chr12 21040020 21040333 + 0 NA exon (ENSMUSG00000116627.1, exon 4 of 4) lincRNA-exon (ENSMUSG00000116627.1, exon 4 of 4) -2783 ENSMUSG00000092229.3 ENSMUSG00000092229 ENSMUST00000174304 Gm5977 transcribed_unprocessed_pseudogene Interval_160073 chr8 106192404 106192750 + 0 NA TTS (ENSMUSG00000031904.5) protein_coding-TTS (ENSMUSG00000031904.5) 18356 ENSMUSG00000033106.6 ENSMUSG00000033106 ENSMUST00000212397 Slc7a6os protein_coding Interval_153601 chr8 3648820 3649297 + 0 NA Intergenic Intergenic -6712 ENSMUSG00000012705.16 ENSMUSG00000012705 ENSMUST00000012849 Retn protein_coding Interval_9287 chr1 155843295 155843895 + 0 NA intron (ENSMUSG00000102558.1, intron 1 of 1) antisense-intron (ENSMUSG00000102558.1, intron 1 of 1) -11854 ENSMUSG00000103717.1 ENSMUSG00000103717 ENSMUST00000193803 Gm38038 processed_pseudogene Interval_84805 chr19 16876069 16876683 + 0 NA intron (ENSMUSG00000118126.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000118126.1, intron 1 of 1) -2571 ENSMUSG00000056829.4 ENSMUSG00000056829 ENSMUST00000072915 Foxb2 protein_coding Interval_100076 chr2 166951562 166953256 + 0 NA TTS (ENSMUSG00000039536.16) protein_coding-TTS (ENSMUSG00000039536.16) 8870 ENSMUSG00000090397.1 ENSMUSG00000090397 ENSMUST00000172037 Gm17096 antisense Interval_79946 chr18 36151289 36152725 + 0 NA intron (ENSMUSG00000060275.14, intron 1 of 9) protein_coding-intron (ENSMUSG00000060275.14, intron 2 of 7) 46356 ENSMUSG00000117852.1 ENSMUSG00000117852 ENSMUST00000235667 4930471G03Rik antisense Interval_162104 chr8 125131842 125132230 + 0 NA intron (ENSMUSG00000043051.17, intron 5 of 13) protein_coding-intron (ENSMUSG00000043051.17, intron 4 of 12) 44049 ENSMUSG00000043051.17 ENSMUSG00000043051 ENSMUST00000126111 Disc1 protein_coding Interval_25756 chr11 51526773 51528392 + 0 NA intron (ENSMUSG00000063564.13, intron 4 of 28) protein_coding-intron (ENSMUSG00000063564.13, intron 4 of 28) -46850 ENSMUSG00000063564.13 ENSMUSG00000063564 ENSMUST00000151098 Col23a1 protein_coding Interval_85298 chr19 24491239 24493608 + 0 NA intron (ENSMUSG00000024867.14, intron 1 of 3) protein_coding-intron (ENSMUSG00000024867.14, intron 1 of 14) -15067 ENSMUSG00000074922.1 ENSMUSG00000074922 ENSMUST00000099556 Fam122a protein_coding Interval_29943 chr11 87941565 87941934 + 0 NA Intergenic Intergenic -2654 ENSMUSG00000044639.3 ENSMUSG00000044639 ENSMUST00000156462 Gm11507 processed_pseudogene Interval_89167 chr2 17812115 17813101 + 0 NA Intergenic Intergenic -14624 ENSMUSG00000081851.1 ENSMUSG00000081851 ENSMUST00000120245 Gm13323 processed_pseudogene Interval_79481 chr18 32247584 32248066 + 0 NA intron (ENSMUSG00000024382.13, intron 6 of 13) protein_coding-intron (ENSMUSG00000024382.13, intron 7 of 14) 7471 ENSMUSG00000024382.13 ENSMUSG00000024382 ENSMUST00000129023 Ercc3 protein_coding Interval_14271 chr10 30195136 30195555 + 0 NA TTS (ENSMUSG00000075266.5) protein_coding-TTS (ENSMUSG00000075266.5) 5147 ENSMUSG00000075266.5 ENSMUSG00000075266 ENSMUST00000099985 Cenpw protein_coding Interval_902 chr1 13076092 13076673 + 0 NA exon (ENSMUSG00000099498.1, exon 3 of 4) lincRNA-exon (ENSMUSG00000099498.1, exon 3 of 4) 7544 ENSMUSG00000099498.1 ENSMUSG00000099498 ENSMUST00000187394 Gm29283 lincRNA Interval_121115 chr4 153210761 153211153 + 0 NA Intergenic Intergenic -7219 ENSMUSG00000087454.1 ENSMUSG00000087454 ENSMUST00000126141 Gm13174 lincRNA Interval_17288 chr10 75603678 75605783 + 0 NA exon (ENSMUSG00000006344.17, exon 5 of 12) protein_coding-exon (ENSMUSG00000006344.17, exon 5 of 12) 8539 ENSMUSG00000089124.1 ENSMUSG00000089124 ENSMUST00000158499 Gm26402 snRNA Interval_98327 chr2 151530589 151531192 + 0 NA Intergenic Intergenic 11458 ENSMUSG00000087433.1 ENSMUSG00000087433 ENSMUST00000148705 Gm14167 antisense Interval_173952 chrX 115143062 115144130 + 0 NA Intergenic Intergenic 139847 ENSMUSG00000083452.1 ENSMUSG00000083452 ENSMUST00000122351 Gm14905 processed_pseudogene Interval_140118 chr6 114406591 114407078 + 0 NA intron (ENSMUSG00000053004.9, intron 1 of 1) protein_coding-intron (ENSMUSG00000053004.9, intron 1 of 2) 3168 ENSMUSG00000053004.9 ENSMUSG00000053004 ENSMUST00000160780 Hrh1 protein_coding Interval_74931 chr17 57450293 57450511 + 0 NA intron (ENSMUSG00000004730.15, intron 17 of 21) protein_coding-intron (ENSMUSG00000004730.15, intron 17 of 22) 91703 ENSMUSG00000004730.15 ENSMUSG00000004730 ENSMUST00000004850 Adgre1 protein_coding Interval_3586 chr1 59762542 59764832 + 0 NA exon (ENSMUSG00000067336.6, exon 1 of 13) protein_coding-exon (ENSMUSG00000067336.6, exon 1 of 13) -37576 ENSMUSG00000104052.1 ENSMUSG00000104052 ENSMUST00000194136 Gm38125 TEC Interval_71729 chr17 25727009 25728127 + 0 NA promoter-TSS (ENSMUSG00000041199.3) protein_coding-promoter-TSS (ENSMUSG00000041199.3) -149 ENSMUSG00000041199.3 ENSMUSG00000041199 ENSMUST00000235645 Rpusd1 protein_coding Interval_16650 chr10 66830649 66831055 + 0 NA Intergenic Intergenic 6683 ENSMUSG00000112514.1 ENSMUSG00000112514 ENSMUST00000217783 Gm47897 lincRNA Interval_45352 chr13 54615859 54617244 + 0 NA Intergenic Intergenic -5250 ENSMUSG00000025873.16 ENSMUSG00000025873 ENSMUST00000141915 Faf2 protein_coding Interval_1496 chr1 24164213 24164640 + 0 NA Intergenic Intergenic 39151 ENSMUSG00000097670.1 ENSMUSG00000097670 ENSMUST00000180661 Gm26607 processed_pseudogene Interval_156583 chr8 53113548 53113833 + 0 NA Intergenic Intergenic 107282 ENSMUSG00000088678.1 ENSMUSG00000088678 ENSMUST00000158053 Gm23666 snoRNA Interval_91320 chr2 37759774 37761170 + 0 NA Intergenic Intergenic -30699 ENSMUSG00000035403.10 ENSMUSG00000035403 ENSMUST00000137693 Crb2 protein_coding Interval_14486 chr10 34252346 34254143 + 0 NA Intergenic Intergenic -7655 ENSMUSG00000111563.1 ENSMUSG00000111563 ENSMUST00000217423 Gm47485 TEC Interval_90175 chr2 28748900 28749523 + 0 NA intron (ENSMUSG00000026807.8, intron 2 of 2) protein_coding-intron (ENSMUSG00000026807.8, intron 10 of 12) 6961 ENSMUSG00000026807.8 ENSMUSG00000026807 ENSMUST00000137588 Ak8 protein_coding Interval_111185 chr4 14500069 14500316 + 0 NA Intergenic Intergenic 66301 ENSMUSG00000081239.3 ENSMUSG00000081239 ENSMUST00000121022 Gm11836 processed_pseudogene Interval_150588 chr7 112664938 112665267 + 0 NA TTS (ENSMUSG00000085945.3) bidirectional_promoter_lncRNA-TTS (ENSMUSG00000085945.3) 12320 ENSMUSG00000109611.1 ENSMUSG00000109611 ENSMUST00000211452 Gm45473 processed_pseudogene Interval_135411 chr6 39198746 39199626 + 0 NA intron (ENSMUSG00000042599.8, intron 1 of 19) protein_coding-intron (ENSMUSG00000042599.8, intron 1 of 19) -7882 ENSMUSG00000115026.1 ENSMUSG00000115026 ENSMUST00000227758 Gm49041 bidirectional_promoter_lncRNA Interval_32871 chr11 112620370 112621963 + 0 NA Intergenic Intergenic 90174 ENSMUSG00000041674.16 ENSMUSG00000041674 ENSMUST00000148724 BC006965 processed_transcript Interval_72661 chr17 31384621 31387100 + 0 NA promoter-TSS (ENSMUSG00000041119.12) protein_coding-promoter-TSS (ENSMUSG00000041119.12) -397 ENSMUSG00000041119.12 ENSMUSG00000041119 ENSMUST00000236367 Pde9a protein_coding Interval_152760 chr7 137313443 137315420 + 0 NA promoter-TSS (ENSMUSG00000010476.14) protein_coding-promoter-TSS (ENSMUSG00000010476.14) -445 ENSMUSG00000010476.14 ENSMUSG00000010476 ENSMUST00000209864 Ebf3 protein_coding Interval_5317 chr1 87509314 87511019 + 0 NA exon (ENSMUSG00000026259.14, exon 1 of 13) protein_coding-exon (ENSMUSG00000026259.14, exon 1 of 13) -4009 ENSMUSG00000091123.1 ENSMUSG00000091123 ENSMUST00000168856 Gm17181 processed_pseudogene Interval_45344 chr13 54582238 54582432 + 0 NA Intergenic Intergenic 4222 ENSMUSG00000080454.3 ENSMUSG00000080454 ENSMUST00000116804 Gm24195 miRNA Interval_70337 chr17 8613868 8614744 + 0 NA intron (ENSMUSG00000023868.17, intron 1 of 3) protein_coding-intron (ENSMUSG00000023868.17, intron 1 of 21) -45446 ENSMUSG00000084390.1 ENSMUSG00000084390 ENSMUST00000119013 Gm15425 processed_pseudogene Interval_172816 chrX 50583876 50584353 + 0 NA intron (ENSMUSG00000085396.7, intron 2 of 11) processed_transcript-intron (ENSMUSG00000085396.7, intron 4 of 6) -19231 ENSMUSG00000085396.7 ENSMUSG00000085396 ENSMUST00000148530 Firre processed_transcript Interval_73039 chr17 34304914 34306039 + 0 NA promoter-TSS (ENSMUSG00000060586.11) protein_coding-promoter-TSS (ENSMUSG00000060586.11) -450 ENSMUSG00000060586.11 ENSMUSG00000060586 ENSMUST00000235501 H2-Eb1 protein_coding Interval_85307 chr19 24537910 24538893 + 0 NA intron (ENSMUSG00000024867.14, intron 1 of 3) protein_coding-intron (ENSMUSG00000024867.14, intron 1 of 14) 17437 ENSMUSG00000024867.14 ENSMUSG00000024867 ENSMUST00000145829 Pip5k1b protein_coding Interval_142943 chr6 147177986 147178898 + 0 NA Intergenic Intergenic -1802 ENSMUSG00000085600.7 ENSMUSG00000085600 ENSMUST00000133471 E330012B07Rik lincRNA Interval_10301 chr1 168316181 168316466 + 0 NA intron (ENSMUSG00000052534.15, intron 2 of 7) protein_coding-intron (ENSMUSG00000052534.15, intron 2 of 6) 21348 ENSMUSG00000103780.1 ENSMUSG00000103780 ENSMUST00000192272 Gm37524 TEC Interval_78537 chr18 14578154 14578623 + 0 NA Intergenic Intergenic 8241 ENSMUSG00000053740.8 ENSMUSG00000053740 ENSMUST00000066378 Gm6457 processed_pseudogene Interval_36850 chr12 54671028 54671460 + 0 NA TTS (ENSMUSG00000054302.15) protein_coding-TTS (ENSMUSG00000054302.15) -4458 ENSMUSG00000093322.1 ENSMUSG00000093322 ENSMUST00000175581 Gm24971 rRNA Interval_82970 chr18 80095176 80095385 + 0 NA intron (ENSMUSG00000056214.9, intron 2 of 2) protein_coding-intron (ENSMUSG00000056214.9, intron 2 of 2) -5318 ENSMUSG00000096597.1 ENSMUSG00000096597 ENSMUST00000178391 Gm21886 protein_coding Interval_11512 chr1 182348317 182350059 + 0 NA Intergenic Intergenic -7617 ENSMUSG00000047539.9 ENSMUSG00000047539 ENSMUST00000194213 Fbxo28 protein_coding Interval_14980 chr10 41659525 41660067 + 0 NA intron (ENSMUSG00000075225.15, intron 10 of 13) protein_coding-intron (ENSMUSG00000075225.15, intron 1 of 12) -10943 ENSMUSG00000093298.1 ENSMUSG00000093298 ENSMUST00000175557 Mir3473b miRNA Interval_133341 chr6 3509529 3510027 + 0 NA intron (ENSMUSG00000001376.17, intron 2 of 5) protein_coding-intron (ENSMUSG00000001376.17, intron 2 of 27) -22349 ENSMUSG00000044156.14 ENSMUSG00000044156 ENSMUST00000200972 Hepacam2 protein_coding Interval_77062 chr17 86149572 86150093 + 0 NA Intergenic Intergenic -25743 ENSMUSG00000117546.1 ENSMUSG00000117546 ENSMUST00000234087 AC154542.1 TEC Interval_25532 chr11 49609273 49610990 + 0 NA intron (ENSMUSG00000020357.3, intron 1 of 6) protein_coding-intron (ENSMUSG00000020357.3, intron 1 of 29) 868 ENSMUSG00000020357.3 ENSMUSG00000020357 ENSMUST00000020617 Flt4 protein_coding Interval_7518 chr1 131953397 131953566 + 0 NA Intergenic Intergenic -9473 ENSMUSG00000100037.1 ENSMUSG00000100037 ENSMUST00000191034 Gm29103 processed_transcript Interval_140258 chr6 115843648 115843885 + 0 NA intron (ENSMUSG00000030322.12, intron 4 of 4) protein_coding-intron (ENSMUSG00000030322.12, intron 7 of 7) 5200 ENSMUSG00000030322.12 ENSMUSG00000030322 ENSMUST00000122816 Mbd4 protein_coding Interval_116580 chr4 115854122 115854343 + 0 NA intron (ENSMUSG00000028708.16, intron 2 of 8) protein_coding-intron (ENSMUSG00000028708.16, intron 2 of 12) 14999 ENSMUSG00000028708.16 ENSMUSG00000028708 ENSMUST00000135209 Mknk1 protein_coding Interval_41352 chr12 113013793 113015347 + 0 NA promoter-TSS (ENSMUSG00000021143.10) protein_coding-promoter-TSS (ENSMUSG00000021143.10) 62 ENSMUSG00000021143.10 ENSMUSG00000021143 ENSMUST00000221382 Pacs2 protein_coding Interval_23535 chr11 23198903 23199662 + 0 NA Intergenic Intergenic -26376 ENSMUSG00000088495.1 ENSMUSG00000088495 ENSMUST00000157870 Gm24398 snoRNA Interval_17447 chr10 76819300 76819831 + 0 NA promoter-TSS (ENSMUSG00000001120.15) protein_coding-promoter-TSS (ENSMUSG00000001120.15) -31143 ENSMUSG00000001120.15 ENSMUSG00000001120 ENSMUST00000165571 Pcbp3 protein_coding Interval_20688 chr10 120240056 120240317 + 0 NA Intergenic Intergenic 13084 ENSMUSG00000020224.15 ENSMUSG00000020224 ENSMUST00000130198 Llph protein_coding Interval_132511 chr5 145651694 145651997 + 0 NA Intergenic Intergenic -17852 ENSMUSG00000106040.1 ENSMUSG00000106040 ENSMUST00000196626 Cyp3a63-ps unprocessed_pseudogene Interval_117297 chr4 122820952 122821226 + 0 NA Intergenic Intergenic -15157 ENSMUSG00000028657.14 ENSMUSG00000028657 ENSMUST00000097902 Ppt1 protein_coding Interval_117021 chr4 119049950 119050247 + 0 NA Intergenic Intergenic 19013 ENSMUSG00000066060.5 ENSMUSG00000066060 ENSMUST00000128998 Gm12866 lincRNA Interval_134470 chr6 28965377 28966128 + 0 NA Intergenic Intergenic -15882 ENSMUSG00000092090.2 ENSMUSG00000092090 ENSMUST00000164104 Gm3294 lincRNA Interval_7542 chr1 132115358 132115594 + 0 NA exon (ENSMUSG00000026437.11, exon 15 of 16) protein_coding-exon (ENSMUSG00000026437.11, exon 15 of 16) 779 ENSMUSG00000026437.11 ENSMUSG00000026437 ENSMUST00000189733 Cdk18 protein_coding Interval_29114 chr11 80409216 80409593 + 0 NA Intergenic Intergenic -19282 ENSMUSG00000017428.16 ENSMUSG00000017428 ENSMUST00000125591 Psmd11 protein_coding Interval_69485 chr16 93825027 93825322 + 0 NA intron (ENSMUSG00000116927.1, intron 1 of 2) antisense-intron (ENSMUSG00000116927.1, intron 1 of 2) 7845 ENSMUSG00000116927.1 ENSMUSG00000116927 ENSMUST00000231503 Gm30881 antisense Interval_55829 chr14 101045370 101046188 + 0 NA Intergenic Intergenic 154551 ENSMUSG00000042888.10 ENSMUSG00000042888 ENSMUST00000187304 Prr30 protein_coding Interval_116997 chr4 118858171 118858736 + 0 NA Intergenic Intergenic 4367 ENSMUSG00000083336.2 ENSMUSG00000083336 ENSMUST00000119243 Olfr1332-ps1 unprocessed_pseudogene Interval_118670 chr4 133107815 133108132 + 0 NA Intergenic Intergenic -22567 ENSMUSG00000028868.13 ENSMUSG00000028868 ENSMUST00000136637 Wasf2 protein_coding Interval_144758 chr7 28059320 28060316 + 0 NA Intergenic Intergenic 5086 ENSMUSG00000109262.1 ENSMUSG00000109262 ENSMUST00000208234 Gm44744 lincRNA Interval_94550 chr2 92148540 92148733 + 0 NA intron (ENSMUSG00000058318.15, intron 1 of 16) protein_coding-intron (ENSMUSG00000058318.15, intron 1 of 15) -35666 ENSMUSG00000058318.15 ENSMUSG00000058318 ENSMUST00000161044 Phf21a protein_coding Interval_149268 chr7 96819611 96819908 + 0 NA intron (ENSMUSG00000048078.16, intron 3 of 5) protein_coding-intron (ENSMUSG00000048078.16, intron 18 of 32) -1453 ENSMUSG00000108635.1 ENSMUSG00000108635 ENSMUST00000205925 Gm44633 antisense Interval_123038 chr5 29044669 29045623 + 0 NA Intergenic Intergenic -151441 ENSMUSG00000029130.12 ENSMUSG00000029130 ENSMUST00000163050 Rnf32 protein_coding Interval_123796 chr5 35574220 35577007 + 0 NA promoter-TSS (ENSMUSG00000029097.11) protein_coding-promoter-TSS (ENSMUSG00000029097.11) -562 ENSMUSG00000029097.11 ENSMUSG00000029097 ENSMUST00000128195 Trmt44 protein_coding Interval_71483 chr17 24072854 24073920 + 0 NA promoter-TSS (ENSMUSG00000016946.6) protein_coding-promoter-TSS (ENSMUSG00000016946.6) -13070 ENSMUSG00000016946.6 ENSMUSG00000016946 ENSMUST00000234555 Kctd5 protein_coding Interval_49766 chr13 114813111 114813910 + 0 NA Intergenic Intergenic -4784 ENSMUSG00000015536.14 ENSMUSG00000015536 ENSMUST00000164871 Mocs2 protein_coding Interval_163692 chr9 24466776 24466995 + 0 NA intron (ENSMUSG00000043067.15, intron 6 of 21) protein_coding-intron (ENSMUSG00000043067.15, intron 7 of 22) 36255 ENSMUSG00000043067.15 ENSMUSG00000043067 ENSMUST00000129048 Dpy19l1 protein_coding Interval_153470 chr7 145025130 145025790 + 0 NA Intergenic Intergenic -85535 ENSMUSG00000070348.5 ENSMUSG00000070348 ENSMUST00000135985 Ccnd1 protein_coding Interval_121397 chr4 155513809 155514046 + 0 NA intron (ENSMUSG00000029064.15, intron 1 of 5) protein_coding-intron (ENSMUSG00000029064.15, intron 1 of 11) -8535 ENSMUSG00000029064.15 ENSMUSG00000029064 ENSMUST00000176308 Gnb1 protein_coding Interval_119416 chr4 137546052 137546385 + 0 NA intron (ENSMUSG00000028763.18, intron 61 of 96) protein_coding-intron (ENSMUSG00000028763.18, intron 61 of 96) 7932 ENSMUSG00000099134.1 ENSMUSG00000099134 ENSMUST00000184284 Mir7018 miRNA Interval_59372 chr15 51960600 51960813 + 0 NA Intergenic Intergenic 30804 ENSMUSG00000022314.10 ENSMUSG00000022314 ENSMUST00000226529 Rad21 protein_coding Interval_42136 chr13 9104677 9104902 + 0 NA intron (ENSMUSG00000033499.14, intron 1 of 15) protein_coding-intron (ENSMUSG00000033499.14, intron 1 of 16) -4516 ENSMUSG00000088442.1 ENSMUSG00000088442 ENSMUST00000157817 Gm23553 misc_RNA Interval_49925 chr13 118366105 118366604 + 0 NA Intergenic Intergenic -20276 ENSMUSG00000097411.2 ENSMUSG00000097411 ENSMUST00000181168 B430218F22Rik antisense Interval_150405 chr7 110180075 110182797 + 0 NA Intergenic Intergenic -40296 ENSMUSG00000031015.8 ENSMUSG00000031015 ENSMUST00000210513 Swap70 protein_coding Interval_49347 chr13 111406403 111406723 + 0 NA Intergenic Intergenic -37883 ENSMUSG00000086201.1 ENSMUSG00000086201 ENSMUST00000132731 Gm6270 lincRNA Interval_10237 chr1 167382248 167383106 + 0 NA intron (ENSMUSG00000026688.5, intron 1 of 5) protein_coding-intron (ENSMUSG00000026688.5, intron 1 of 5) 11164 ENSMUSG00000026688.5 ENSMUSG00000026688 ENSMUST00000028005 Mgst3 protein_coding Interval_113823 chr4 59130996 59132921 + 0 NA intron (ENSMUSG00000038598.9, intron 1 of 27) protein_coding-intron (ENSMUSG00000038598.9, intron 1 of 27) 5496 ENSMUSG00000086660.1 ENSMUSG00000086660 ENSMUST00000132140 Gm12594 sense_intronic Interval_109114 chr3 135891353 135891605 + 0 NA Intergenic Intergenic 11362 ENSMUSG00000106141.1 ENSMUSG00000106141 ENSMUST00000199246 Gm18330 processed_pseudogene Interval_31533 chr11 101207951 101208210 + 0 NA exon (ENSMUSG00000006920.14, exon 2 of 2) protein_coding-exon (ENSMUSG00000006920.14, exon 2 of 2) 1325 ENSMUSG00000006920.14 ENSMUSG00000006920 ENSMUST00000151291 Ezh1 protein_coding Interval_20054 chr10 112803498 112803804 + 0 NA Intergenic Intergenic -34101 ENSMUSG00000112722.1 ENSMUSG00000112722 ENSMUST00000218495 Gm3942 lincRNA Interval_72345 chr17 29331326 29331940 + 0 NA TTS (ENSMUSG00000024012.18) protein_coding-TTS (ENSMUSG00000024012.18) 5505 ENSMUSG00000024012.18 ENSMUSG00000024012 ENSMUST00000132753 Mtch1 protein_coding Interval_157493 chr8 70873049 70874223 + 0 NA promoter-TSS (ENSMUSG00000007721.6) protein_coding-promoter-TSS (ENSMUSG00000007721.6) -253 ENSMUSG00000007721.6 ENSMUSG00000007721 ENSMUST00000212680 Ccdc124 protein_coding Interval_18971 chr10 93489808 93491164 + 0 NA intron (ENSMUSG00000020017.14, intron 3 of 19) protein_coding-intron (ENSMUSG00000020017.14, intron 3 of 18) 8015 ENSMUSG00000015889.8 ENSMUSG00000015889 ENSMUST00000217556 Lta4h protein_coding Interval_20626 chr10 119666868 119668144 + 0 NA intron (ENSMUSG00000034813.18, intron 1 of 21) protein_coding-intron (ENSMUSG00000034813.18, intron 1 of 22) 13442 ENSMUSG00000112106.1 ENSMUSG00000112106 ENSMUST00000218068 Gm47026 TEC Interval_50936 chr14 20873140 20874293 + 0 NA Intergenic Intergenic -17295 ENSMUSG00000114728.1 ENSMUSG00000114728 ENSMUST00000225216 Gm6128 processed_pseudogene Interval_17458 chr10 76999395 76999812 + 0 NA intron (ENSMUSG00000112143.1, intron 1 of 4) lincRNA-intron (ENSMUSG00000112143.1, intron 1 of 4) 8966 ENSMUSG00000112143.1 ENSMUSG00000112143 ENSMUST00000220294 Gm35721 lincRNA Interval_25280 chr11 46087244 46087466 + 0 NA intron (ENSMUSG00000011256.16, intron 3 of 22) protein_coding-intron (ENSMUSG00000011256.16, intron 3 of 22) -14915 ENSMUSG00000098942.1 ENSMUSG00000098942 ENSMUST00000184230 Mir8100 miRNA Interval_135012 chr6 34554354 34555006 + 0 NA Intergenic Intergenic 21127 ENSMUSG00000085187.1 ENSMUSG00000085187 ENSMUST00000125185 Gm13860 lincRNA Interval_162638 chr9 7133925 7134284 + 0 NA intron (ENSMUSG00000047193.16, intron 31 of 89) protein_coding-intron (ENSMUSG00000047193.16, intron 31 of 88) -16516 ENSMUSG00000047193.16 ENSMUSG00000047193 ENSMUST00000139115 Dync2h1 protein_coding Interval_2669 chr1 43139425 43140025 + 0 NA intron (ENSMUSG00000008136.14, intron 2 of 2) protein_coding-intron (ENSMUSG00000008136.14, intron 3 of 5) 41015 ENSMUSG00000010290.7 ENSMUSG00000010290 ENSMUST00000010434 AI597479 protein_coding Interval_82403 chr18 73730868 73731587 + 0 NA exon (ENSMUSG00000118321.1, exon 1 of 1) processed_pseudogene-exon (ENSMUSG00000118321.1, exon 1 of 1) 462 ENSMUSG00000118321.1 ENSMUSG00000118321 ENSMUST00000238169 Gm17943 processed_pseudogene Interval_4621 chr1 75487021 75488187 + 0 NA promoter-TSS (ENSMUSG00000026211.17) protein_coding-promoter-TSS (ENSMUSG00000026211.17) 474 ENSMUSG00000026211.17 ENSMUSG00000026211 ENSMUST00000145306 Obsl1 protein_coding Interval_47466 chr13 84811385 84812004 + 0 NA Intergenic Intergenic -120753 ENSMUSG00000098081.1 ENSMUSG00000098081 ENSMUST00000182391 Gm26913 processed_pseudogene Interval_67936 chr16 59704492 59705366 + 0 NA intron (ENSMUSG00000055540.15, intron 14 of 17) protein_coding-intron (ENSMUSG00000055540.15, intron 14 of 17) 65720 ENSMUSG00000116894.1 ENSMUSG00000116894 ENSMUST00000232302 4930547E14Rik processed_transcript Interval_156524 chr8 49462035 49462242 + 0 NA TTS (ENSMUSG00000110137.1) TEC-TTS (ENSMUSG00000110137.1) 2601 ENSMUSG00000110137.1 ENSMUSG00000110137 ENSMUST00000210206 Gm45577 TEC Interval_96417 chr2 122334255 122334878 + 0 NA intron (ENSMUSG00000033268.8, intron 20 of 32) protein_coding-intron (ENSMUSG00000033268.8, intron 20 of 32) 18894 ENSMUSG00000033268.8 ENSMUSG00000033268 ENSMUST00000099461 Duox1 protein_coding Interval_157677 chr8 72256769 72257957 + 0 NA TTS (ENSMUSG00000003033.15) protein_coding-TTS (ENSMUSG00000003033.15) 17267 ENSMUSG00000003033.15 ENSMUSG00000003033 ENSMUST00000151546 Ap1m1 protein_coding Interval_128769 chr5 115163350 115164105 + 0 NA Intergenic Intergenic -12681 ENSMUSG00000048578.11 ENSMUSG00000048578 ENSMUST00000124678 Mlec protein_coding Interval_98755 chr2 154748368 154749615 + 0 NA Intergenic Intergenic -10540 ENSMUSG00000085691.1 ENSMUSG00000085691 ENSMUST00000155334 Gm14216 lincRNA Interval_91202 chr2 35882218 35882726 + 0 NA promoter-TSS (ENSMUSG00000026885.13) protein_coding-promoter-TSS (ENSMUSG00000026885.13) 38277 ENSMUSG00000106994.1 ENSMUSG00000106994 ENSMUST00000202084 Gm10829 TEC Interval_61338 chr15 80937499 80938590 + 0 NA exon (ENSMUSG00000047888.10, exon 25 of 25) protein_coding-exon (ENSMUSG00000047888.10, exon 25 of 25) -1995 ENSMUSG00000092868.1 ENSMUSG00000092868 ENSMUST00000175127 Mir5113 miRNA Interval_32903 chr11 112959250 112960420 + 0 NA Intergenic Intergenic 134656 ENSMUSG00000020624.3 ENSMUSG00000020624 ENSMUST00000153429 4933434M16Rik lincRNA Interval_165304 chr9 46149920 46150780 + 0 NA intron (ENSMUSG00000034135.15, intron 3 of 24) protein_coding-intron (ENSMUSG00000034135.15, intron 3 of 22) 27220 ENSMUSG00000034135.15 ENSMUSG00000034135 ENSMUST00000138338 Sik3 protein_coding Interval_107090 chr3 103425984 103426494 + 0 NA Intergenic Intergenic -1198 ENSMUSG00000065789.1 ENSMUSG00000065789 ENSMUST00000083855 Gm25869 snRNA Interval_123166 chr5 30243893 30244141 + 0 NA intron (ENSMUSG00000075703.15, intron 1 of 1) protein_coding-intron (ENSMUSG00000075703.15, intron 1 of 8) -3569 ENSMUSG00000085099.1 ENSMUSG00000085099 ENSMUST00000137940 Gm16288 processed_pseudogene Interval_114350 chr4 74171001 74171661 + 0 NA intron (ENSMUSG00000049122.17, intron 1 of 1) protein_coding-intron (ENSMUSG00000049122.17, intron 13 of 13) 2394 ENSMUSG00000049122.17 ENSMUSG00000049122 ENSMUST00000154134 Frmd3 protein_coding Interval_114455 chr4 78545956 78546436 + 0 NA Intergenic Intergenic 115392 ENSMUSG00000085840.1 ENSMUSG00000085840 ENSMUST00000126647 Gm11261 lincRNA Interval_163209 chr9 18297850 18299778 + 0 NA TTS (ENSMUSG00000110816.1) processed_pseudogene-TTS (ENSMUSG00000110816.1) 1837 ENSMUSG00000110816.1 ENSMUSG00000110816 ENSMUST00000217524 Gm19178 processed_pseudogene Interval_70574 chr17 12087875 12088090 + 0 NA Intergenic Intergenic -31347 ENSMUSG00000023827.8 ENSMUSG00000023827 ENSMUST00000167905 Agpat4 protein_coding Interval_134781 chr6 31495992 31496432 + 0 NA intron (ENSMUSG00000025609.15, intron 1 of 3) protein_coding-intron (ENSMUSG00000025609.15, intron 15 of 17) 28099 ENSMUSG00000025608.9 ENSMUSG00000025608 ENSMUST00000136877 Podxl protein_coding Interval_80132 chr18 37767658 37768596 + 0 NA promoter-TSS (ENSMUSG00000097330.2) processed_transcript-promoter-TSS (ENSMUSG00000097330.2) 2354 ENSMUSG00000102428.1 ENSMUSG00000102428 ENSMUST00000193045 Pcdhga12 protein_coding Interval_115880 chr4 105593679 105594523 + 0 NA Intergenic Intergenic 15761 ENSMUSG00000082061.1 ENSMUSG00000082061 ENSMUST00000121621 Gm12726 processed_pseudogene Interval_150360 chr7 109889117 109890018 + 0 NA Intergenic Intergenic 7989 ENSMUSG00000035901.14 ENSMUSG00000035901 ENSMUST00000151923 Dennd5a protein_coding Interval_48599 chr13 100588653 100589221 + 0 NA Intergenic Intergenic -15422 ENSMUSG00000065678.1 ENSMUSG00000065678 ENSMUST00000083744 Gm24261 snRNA Interval_169296 chr9 96217541 96218786 + 0 NA promoter-TSS (ENSMUSG00000103611.1) TEC-promoter-TSS (ENSMUSG00000103611.1) -967 ENSMUSG00000103611.1 ENSMUSG00000103611 ENSMUST00000192006 Gm37195 TEC Interval_13763 chr10 21890939 21891177 + 0 NA intron (ENSMUSG00000019970.15, intron 1 of 13) protein_coding-intron (ENSMUSG00000019970.15, intron 1 of 13) -12166 ENSMUSG00000080607.1 ENSMUSG00000080607 ENSMUST00000116957 Gm23839 snoRNA Interval_108805 chr3 131602971 131603390 + 0 NA intron (ENSMUSG00000028032.13, intron 10 of 14) protein_coding-intron (ENSMUSG00000028032.13, intron 7 of 11) 10600 ENSMUSG00000105973.1 ENSMUSG00000105973 ENSMUST00000198636 Gm42881 TEC Interval_146828 chr7 52688831 52689060 + 0 NA Intergenic Intergenic -66520 ENSMUSG00000074092.5 ENSMUSG00000074092 ENSMUST00000117187 Gm6181 processed_pseudogene Interval_122821 chr5 25759381 25761690 + 0 NA intron (ENSMUSG00000056367.14, intron 1 of 10) protein_coding-intron (ENSMUSG00000056367.14, intron 1 of 11) 496 ENSMUSG00000056367.14 ENSMUSG00000056367 ENSMUST00000198693 Actr3b protein_coding Interval_119524 chr4 138130230 138130428 + 0 NA intron (ENSMUSG00000028760.16, intron 11 of 33) protein_coding-intron (ENSMUSG00000028760.16, intron 12 of 34) 8189 ENSMUSG00000084804.1 ENSMUSG00000084804 ENSMUST00000124620 1700095J12Rik antisense Interval_11322 chr1 180953850 180954147 + 0 NA intron (ENSMUSG00000026519.16, intron 4 of 4) protein_coding-intron (ENSMUSG00000026519.16, intron 5 of 22) 4151 ENSMUSG00000085563.2 ENSMUSG00000085563 ENSMUST00000128545 2210411M09Rik antisense Interval_110006 chr3 152433962 152434249 + 0 NA intron (ENSMUSG00000039068.16, intron 4 of 13) protein_coding-intron (ENSMUSG00000039068.16, intron 4 of 13) 37973 ENSMUSG00000039068.16 ENSMUSG00000039068 ENSMUST00000135044 Zzz3 protein_coding Interval_15496 chr10 49416849 49417869 + 0 NA intron (ENSMUSG00000056073.16, intron 3 of 8) protein_coding-intron (ENSMUSG00000056073.16, intron 8 of 15) 67120 ENSMUSG00000111935.1 ENSMUSG00000111935 ENSMUST00000218320 Gm47023 TEC Interval_168928 chr9 89100078 89101013 + 0 NA Intergenic Intergenic -7855 ENSMUSG00000079162.8 ENSMUSG00000079162 ENSMUST00000189557 Trim43b protein_coding Interval_67105 chr16 43121541 43122049 + 0 NA intron (ENSMUSG00000022708.16, intron 4 of 8) protein_coding-intron (ENSMUSG00000022708.16, intron 4 of 14) -4438 ENSMUSG00000094605.1 ENSMUSG00000094605 ENSMUST00000180317 Gm25873 snRNA Interval_29551 chr11 84855072 84856304 + 0 NA intron (ENSMUSG00000020530.14, intron 5 of 14) protein_coding-intron (ENSMUSG00000020530.14, intron 5 of 14) 15050 ENSMUSG00000020530.14 ENSMUSG00000020530 ENSMUST00000167429 Ggnbp2 protein_coding Interval_33117 chr11 114565119 114566227 + 0 NA Intergenic Intergenic -98935 ENSMUSG00000083769.1 ENSMUSG00000083769 ENSMUST00000120766 Gm11689 processed_pseudogene Interval_129547 chr5 120836876 120837637 + 0 NA Intergenic Intergenic -11116 ENSMUSG00000053765.4 ENSMUSG00000053765 ENSMUST00000123431 Oas1f protein_coding Interval_2296 chr1 37871743 37872898 + 0 NA promoter-TSS (ENSMUSG00000037216.5) protein_coding-promoter-TSS (ENSMUSG00000037216.5) -242 ENSMUSG00000037216.5 ENSMUSG00000037216 ENSMUST00000144440 Lipt1 protein_coding Interval_152473 chr7 133205360 133206053 + 0 NA Intergenic Intergenic 77455 ENSMUSG00000109816.1 ENSMUSG00000109816 ENSMUST00000209850 4930483O08Rik lincRNA Interval_89650 chr2 24001660 24001976 + 0 NA Intergenic Intergenic 47261 ENSMUSG00000026986.14 ENSMUSG00000026986 ENSMUST00000114497 Hnmt protein_coding Interval_92005 chr2 52456750 52456925 + 0 NA intron (ENSMUSG00000017412.15, intron 9 of 13) protein_coding-intron (ENSMUSG00000017412.15, intron 9 of 13) 31825 ENSMUSG00000085315.7 ENSMUSG00000085315 ENSMUST00000143821 A430018G15Rik processed_transcript Interval_38125 chr12 75805833 75806487 + 0 NA Intergenic Intergenic -12190 ENSMUSG00000063450.14 ENSMUSG00000063450 ENSMUST00000151286 Syne2 protein_coding Interval_171310 chr9 116283513 116284840 + 0 NA Intergenic Intergenic -46992 ENSMUSG00000110752.1 ENSMUSG00000110752 ENSMUST00000217456 D730003K21Rik lincRNA Interval_114711 chr4 84172591 84172980 + 0 NA Intergenic Intergenic -42496 ENSMUSG00000087378.1 ENSMUSG00000087378 ENSMUST00000150794 Gm12414 lincRNA Interval_93007 chr2 69536057 69536697 + 0 NA intron (ENSMUSG00000027070.14, intron 6 of 24) protein_coding-intron (ENSMUSG00000027070.14, intron 6 of 78) -27232 ENSMUSG00000027070.14 ENSMUSG00000027070 ENSMUST00000092551 Lrp2 protein_coding Interval_24905 chr11 41080169 41080356 + 0 NA Intergenic Intergenic -45139 ENSMUSG00000065916.1 ENSMUSG00000065916 ENSMUST00000083982 Gm24446 snRNA Interval_122877 chr5 26717025 26717380 + 0 NA Intergenic Intergenic 111303 ENSMUSG00000104733.1 ENSMUSG00000104733 ENSMUST00000196217 Gm29784 processed_pseudogene Interval_63533 chr15 101845030 101846600 + 0 NA TTS (ENSMUSG00000046834.7) protein_coding-TTS (ENSMUSG00000046834.7) 3146 ENSMUSG00000046834.7 ENSMUSG00000046834 ENSMUST00000230798 Krt1 protein_coding Interval_11398 chr1 181617293 181617783 + 0 NA intron (ENSMUSG00000047369.17, intron 14 of 84) protein_coding-intron (ENSMUSG00000047369.17, intron 14 of 83) 35585 ENSMUSG00000047369.17 ENSMUSG00000047369 ENSMUST00000195808 Dnah14 protein_coding Interval_148586 chr7 82852388 82852745 + 0 NA TTS (ENSMUSG00000109383.1) lincRNA-TTS (ENSMUSG00000109383.1) 967 ENSMUSG00000030636.15 ENSMUSG00000030636 ENSMUST00000032872 1700010L04Rik lincRNA Interval_5488 chr1 89190782 89191916 + 0 NA Intergenic Intergenic 65632 ENSMUSG00000102083.1 ENSMUSG00000102083 ENSMUST00000191231 Gm5259 processed_pseudogene Interval_76843 chr17 84454489 84455269 + 0 NA exon (ENSMUSG00000024251.10, exon 6 of 38) protein_coding-exon (ENSMUSG00000024251.10, exon 6 of 38) 63450 ENSMUSG00000096415.1 ENSMUSG00000096415 ENSMUST00000179017 Gm24722 snRNA Interval_83676 chr19 3656315 3657540 + 0 NA intron (ENSMUSG00000024913.16, intron 2 of 22) protein_coding-intron (ENSMUSG00000024913.16, intron 2 of 22) 29634 ENSMUSG00000024913.16 ENSMUSG00000024913 ENSMUST00000176867 Lrp5 protein_coding Interval_115837 chr4 105175000 105176664 + 0 NA intron (ENSMUSG00000028517.8, intron 1 of 5) protein_coding-intron (ENSMUSG00000028517.8, intron 1 of 5) 18485 ENSMUSG00000028517.8 ENSMUSG00000028517 ENSMUST00000064139 Plpp3 protein_coding Interval_47703 chr13 91442474 91442945 + 0 NA Intergenic Intergenic -18461 ENSMUSG00000003992.15 ENSMUSG00000003992 ENSMUST00000137658 Ssbp2 protein_coding Interval_105638 chr3 88284872 88285549 + 0 NA promoter-TSS (ENSMUSG00000103574.1) processed_pseudogene-promoter-TSS (ENSMUSG00000103574.1) -457 ENSMUSG00000103574.1 ENSMUSG00000103574 ENSMUST00000195161 Gm37116 processed_pseudogene Interval_134253 chr6 23797848 23798064 + 0 NA intron (ENSMUSG00000017978.18, intron 2 of 29) protein_coding-intron (ENSMUSG00000017978.18, intron 1 of 29) 41181 ENSMUSG00000017978.18 ENSMUSG00000017978 ENSMUST00000115355 Cadps2 protein_coding Interval_88308 chr2 3546397 3547367 + 0 NA Intergenic Intergenic -3875 ENSMUSG00000082580.3 ENSMUSG00000082580 ENSMUST00000122241 Gm13182 processed_pseudogene Interval_37993 chr12 73686032 73686385 + 0 NA intron (ENSMUSG00000021108.18, intron 3 of 14) protein_coding-intron (ENSMUSG00000021108.18, intron 2 of 13) 101412 ENSMUSG00000021108.18 ENSMUSG00000021108 ENSMUST00000220898 Prkch protein_coding Interval_69177 chr16 91139377 91142660 + 0 NA intron (ENSMUSG00000116763.1, intron 2 of 2) lincRNA-intron (ENSMUSG00000116763.1, intron 2 of 2) -5542 ENSMUSG00000116749.1 ENSMUSG00000116749 ENSMUST00000232284 Gm49612 processed_pseudogene Interval_35589 chr12 25095627 25096897 + 0 NA promoter-TSS (ENSMUSG00000020644.9) protein_coding-promoter-TSS (ENSMUSG00000020644.9) -175 ENSMUSG00000020644.9 ENSMUSG00000020644 ENSMUST00000222667 Id2 protein_coding Interval_38644 chr12 80772490 80773324 + 0 NA Intergenic Intergenic -12220 ENSMUSG00000062961.7 ENSMUSG00000062961 ENSMUST00000073251 Ccdc177 protein_coding Interval_113810 chr4 58984715 58985597 + 0 NA intron (ENSMUSG00000028378.6, intron 1 of 9) protein_coding-intron (ENSMUSG00000028378.6, intron 1 of 9) 1963 ENSMUSG00000028378.6 ENSMUSG00000028378 ENSMUST00000030069 Ptgr1 protein_coding Interval_157811 chr8 73758813 73759346 + 0 NA Intergenic Intergenic -8296 ENSMUSG00000047657.6 ENSMUSG00000047657 ENSMUST00000079090 Crry-ps processed_pseudogene Interval_21482 chr10 128845639 128846034 + 0 NA intron (ENSMUSG00000078427.3, intron 4 of 11) protein_coding-intron (ENSMUSG00000078427.3, intron 4 of 10) 23904 ENSMUSG00000078427.3 ENSMUSG00000078427 ENSMUST00000220381 Sarnp protein_coding Interval_107101 chr3 103540808 103541698 + 0 NA Intergenic Intergenic -34125 ENSMUSG00000027849.19 ENSMUSG00000027849 ENSMUST00000118563 Syt6 protein_coding Interval_80147 chr18 37865893 37866774 + 0 NA intron (ENSMUSG00000024456.16, intron 16 of 25) protein_coding-intron (ENSMUSG00000024456.16, intron 18 of 27) -11673 ENSMUSG00000098706.1 ENSMUSG00000098706 ENSMUST00000183927 Mir6979 miRNA Interval_129745 chr5 122090980 122091613 + 0 NA Intergenic Intergenic -9736 ENSMUSG00000013936.12 ENSMUSG00000013936 ENSMUST00000126006 Myl2 protein_coding Interval_48641 chr13 100789004 100789518 + 0 NA Intergenic Intergenic -2859 ENSMUSG00000041431.16 ENSMUSG00000041431 ENSMUST00000142056 Ccnb1 protein_coding Interval_141256 chr6 126578513 126579157 + 0 NA Intergenic Intergenic -22666 ENSMUSG00000110390.1 ENSMUSG00000110390 ENSMUST00000210335 Gm45869 lincRNA Interval_92031 chr2 52741678 52743267 + 0 NA promoter-TSS (ENSMUSG00000055371.17) protein_coding-promoter-TSS (ENSMUSG00000055371.17) -282 ENSMUSG00000055371.17 ENSMUSG00000055371 ENSMUST00000138290 Stam2 protein_coding Interval_135163 chr6 37097131 37097983 + 0 NA exon (ENSMUSG00000038665.15, exon 4 of 33) protein_coding-exon (ENSMUSG00000038665.15, exon 4 of 33) 140707 ENSMUSG00000107310.1 ENSMUSG00000107310 ENSMUST00000202891 Gm7452 transcribed_processed_pseudogene Interval_24330 chr11 32439365 32439565 + 0 NA Intergenic Intergenic -15905 ENSMUSG00000044949.4 ENSMUSG00000044949 ENSMUST00000051053 Ubtd2 protein_coding Interval_93575 chr2 74601902 74602300 + 0 NA Intergenic Intergenic -10192 ENSMUSG00000075279.5 ENSMUSG00000075279 ENSMUST00000173086 Mrpl23-ps1 processed_pseudogene Interval_67768 chr16 57031504 57031806 + 0 NA Intergenic Intergenic 39697 ENSMUSG00000046748.8 ENSMUSG00000046748 ENSMUST00000227043 Tmem45a2 protein_coding Interval_9757 chr1 161876196 161877920 + 0 NA promoter-TSS (ENSMUSG00000040297.12) protein_coding-promoter-TSS (ENSMUSG00000040297.12) -15089 ENSMUSG00000103158.5 ENSMUSG00000103158 ENSMUST00000194266 Gm31925 lincRNA Interval_163833 chr9 27007462 27007892 + 0 NA TTS (ENSMUSG00000031988.10) protein_coding-TTS (ENSMUSG00000031988.10) 4617 ENSMUSG00000035443.10 ENSMUSG00000035443 ENSMUST00000216361 Thyn1 protein_coding Interval_107897 chr3 116656003 116656799 + 0 NA intron (ENSMUSG00000105103.1, intron 2 of 6) protein_coding-intron (ENSMUSG00000089911.4, intron 1 of 11) -7331 ENSMUSG00000106125.1 ENSMUSG00000106125 ENSMUST00000197000 4930512P04Rik lincRNA Interval_108518 chr3 127908963 127909861 + 0 NA Intergenic Intergenic -6760 ENSMUSG00000104763.1 ENSMUSG00000104763 ENSMUST00000198240 9830132P13Rik lincRNA Interval_122279 chr5 20911924 20914581 + 0 NA intron (ENSMUSG00000039968.9, intron 3 of 6) protein_coding-intron (ENSMUSG00000039968.9, intron 3 of 7) 9147 ENSMUSG00000039968.9 ENSMUSG00000039968 ENSMUST00000197089 Rsbn1l protein_coding Interval_65427 chr16 22277730 22278432 + 0 NA Intergenic Intergenic -12172 ENSMUSG00000022858.16 ENSMUSG00000022858 ENSMUST00000231312 Tra2b protein_coding Interval_36517 chr12 48163921 48164174 + 0 NA Intergenic Intergenic -116513 ENSMUSG00000111984.1 ENSMUSG00000111984 ENSMUST00000218240 Gm46327 unprocessed_pseudogene Interval_142797 chr6 145779141 145781314 + 0 NA intron (ENSMUSG00000030259.12, intron 1 of 2) protein_coding-intron (ENSMUSG00000030259.12, intron 1 of 4) 29656 ENSMUSG00000030259.12 ENSMUSG00000030259 ENSMUST00000058538 Rassf8 protein_coding Interval_39213 chr12 85883956 85884144 + 0 NA exon (ENSMUSG00000012609.19, exon 13 of 13) protein_coding-exon (ENSMUSG00000012609.19, exon 13 of 13) -61800 ENSMUSG00000021252.11 ENSMUSG00000021252 ENSMUST00000142331 Erg28 protein_coding Interval_41658 chr12 117465190 117465420 + 0 NA Intergenic Intergenic -109037 ENSMUSG00000089482.1 ENSMUSG00000089482 ENSMUST00000158857 Gm24741 rRNA Interval_104030 chr3 57523560 57524007 + 0 NA intron (ENSMUSG00000027803.14, intron 2 of 6) protein_coding-intron (ENSMUSG00000027803.14, intron 2 of 6) -4449 ENSMUSG00000083538.1 ENSMUSG00000083538 ENSMUST00000120831 Gm16016 processed_pseudogene Interval_158300 chr8 80930692 80931177 + 0 NA Intergenic Intergenic -2743 ENSMUSG00000098223.1 ENSMUSG00000098223 ENSMUST00000182279 Gm4891 processed_pseudogene Interval_23167 chr11 20272109 20272687 + 0 NA Intergenic Intergenic 17985 ENSMUSG00000083792.1 ENSMUSG00000083792 ENSMUST00000121298 Rpl12-ps2 processed_pseudogene Interval_31850 chr11 103344468 103345276 + 0 NA promoter-TSS (ENSMUSG00000034255.17) protein_coding-promoter-TSS (ENSMUSG00000034255.17) 119 ENSMUSG00000085887.2 ENSMUSG00000085887 ENSMUST00000124462 Arhgap27os3 antisense Interval_33267 chr11 115558063 115559066 + 0 NA Intergenic Intergenic -11551 ENSMUSG00000020739.11 ENSMUSG00000020739 ENSMUST00000134209 Nup85 protein_coding Interval_113412 chr4 54709023 54709291 + 0 NA Intergenic Intergenic -1467 ENSMUSG00000084710.1 ENSMUSG00000084710 ENSMUST00000122761 Gm24628 misc_RNA Interval_2553 chr1 40305900 40306365 + 0 NA intron (ENSMUSG00000026072.12, intron 8 of 10) protein_coding-intron (ENSMUSG00000026072.12, intron 8 of 10) -18558 ENSMUSG00000070942.8 ENSMUSG00000070942 ENSMUST00000193388 Il1rl2 protein_coding Interval_164856 chr9 42471162 42472601 + 0 NA exon (ENSMUSG00000037287.15, exon 1 of 1) protein_coding-exon (ENSMUSG00000037287.15, exon 1 of 1) 358 ENSMUSG00000037287.15 ENSMUSG00000037287 ENSMUST00000213428 Tbcel protein_coding Interval_150302 chr7 109472324 109472676 + 0 NA intron (ENSMUSG00000031026.15, intron 1 of 2) protein_coding-intron (ENSMUSG00000031026.15, intron 9 of 19) 2634 ENSMUSG00000031026.15 ENSMUSG00000031026 ENSMUST00000137704 Trim66 protein_coding Interval_20584 chr10 119210791 119211062 + 0 NA TTS (ENSMUSG00000020114.12) protein_coding-TTS (ENSMUSG00000020114.12) 1683 ENSMUSG00000020114.12 ENSMUSG00000020114 ENSMUST00000126373 Cand1 protein_coding Interval_33775 chr11 118433652 118434525 + 0 NA intron (ENSMUSG00000017446.14, intron 1 of 3) protein_coding-intron (ENSMUSG00000017446.14, intron 1 of 3) -9383 ENSMUSG00000017446.14 ENSMUSG00000017446 ENSMUST00000133558 C1qtnf1 protein_coding Interval_166810 chr9 62887888 62888170 + 0 NA promoter-TSS (ENSMUSG00000032405.10) protein_coding-promoter-TSS (ENSMUSG00000032405.10) -20029 ENSMUSG00000074250.11 ENSMUSG00000074250 ENSMUST00000139570 Gm10653 transcribed_processed_pseudogene Interval_64506 chr16 12872867 12873068 + 0 NA intron (ENSMUSG00000116520.1, intron 1 of 11) lincRNA-intron (ENSMUSG00000116520.1, intron 1 of 11) 72388 ENSMUSG00000101565.2 ENSMUSG00000101565 ENSMUST00000190074 1700003L19Rik lincRNA Interval_20880 chr10 121697517 121698027 + 0 NA Intergenic Intergenic 7263 ENSMUSG00000112526.1 ENSMUSG00000112526 ENSMUST00000220180 Gm35865 lincRNA Interval_29055 chr11 80086486 80087215 + 0 NA Intergenic Intergenic -5989 ENSMUSG00000017561.16 ENSMUSG00000017561 ENSMUST00000178280 Crlf3 protein_coding Interval_62399 chr15 91786343 91786523 + 0 NA intron (ENSMUSG00000036273.15, intron 1 of 11) protein_coding-intron (ENSMUSG00000036273.15, intron 40 of 50) -28195 ENSMUSG00000036273.15 ENSMUSG00000036273 ENSMUST00000172797 Lrrk2 protein_coding Interval_116146 chr4 108118006 108119133 + 0 NA promoter-TSS (ENSMUSG00000028603.15) protein_coding-promoter-TSS (ENSMUSG00000028603.15) -65 ENSMUSG00000028603.15 ENSMUSG00000028603 ENSMUST00000130776 Scp2 protein_coding Interval_119085 chr4 135433222 135434332 + 0 NA promoter-TSS (ENSMUSG00000059713.12) protein_coding-promoter-TSS (ENSMUSG00000059713.12) 46 ENSMUSG00000059713.12 ENSMUSG00000059713 ENSMUST00000156635 Rcan3 protein_coding Interval_98955 chr2 156305770 156306387 + 0 NA intron (ENSMUSG00000038116.16, intron 16 of 16) protein_coding-intron (ENSMUSG00000038116.16, intron 17 of 17) 6669 ENSMUSG00000046229.10 ENSMUSG00000046229 ENSMUST00000079125 Scand1 protein_coding Interval_4692 chr1 77339441 77339751 + 0 NA Intergenic Intergenic 157172 ENSMUSG00000099141.1 ENSMUSG00000099141 ENSMUST00000184495 Mir6352 miRNA Interval_129692 chr5 121793511 121793922 + 0 NA intron (ENSMUSG00000042605.16, intron 4 of 13) protein_coding-intron (ENSMUSG00000042605.16, intron 14 of 24) 25557 ENSMUSG00000099063.1 ENSMUSG00000099063 ENSMUST00000183860 Mir7031 miRNA Interval_115588 chr4 101151341 101151558 + 0 NA TTS (ENSMUSG00000028530.14) protein_coding-TTS (ENSMUSG00000028530.14) -35315 ENSMUSG00000077677.1 ENSMUSG00000077677 ENSMUST00000104489 Gm24468 snRNA Interval_98082 chr2 147743423 147743649 + 0 NA Intergenic Intergenic 32843 ENSMUSG00000051986.6 ENSMUSG00000051986 ENSMUST00000152542 A530006G24Rik lincRNA Interval_15260 chr10 43888966 43890009 + 0 NA intron (ENSMUSG00000019863.7, intron 2 of 2) protein_coding-intron (ENSMUSG00000019863.7, intron 4 of 10) 6054 ENSMUSG00000019863.7 ENSMUSG00000019863 ENSMUST00000217541 Qrsl1 protein_coding Interval_114155 chr4 65278415 65278668 + 0 NA intron (ENSMUSG00000028370.7, intron 10 of 21) protein_coding-intron (ENSMUSG00000028370.7, intron 10 of 21) 154367 ENSMUSG00000028370.7 ENSMUSG00000028370 ENSMUST00000084501 Pappa protein_coding Interval_60680 chr15 76126009 76126834 + 0 NA promoter-TSS (ENSMUSG00000044361.16) protein_coding-promoter-TSS (ENSMUSG00000044361.16) -1082 ENSMUSG00000044361.16 ENSMUSG00000044361 ENSMUST00000226663 BC024139 protein_coding Interval_168286 chr9 78431964 78432748 + 0 NA exon (ENSMUSG00000032344.17, exon 5 of 5) protein_coding-exon (ENSMUSG00000032344.17, exon 5 of 5) 3911 ENSMUSG00000087052.1 ENSMUSG00000087052 ENSMUST00000144982 Gm8093 transcribed_processed_pseudogene Interval_57540 chr15 12202450 12205671 + 0 NA promoter-TSS (ENSMUSG00000039458.15) protein_coding-promoter-TSS (ENSMUSG00000039458.15) -1044 ENSMUSG00000039458.15 ENSMUSG00000039458 ENSMUST00000173071 Mtmr12 protein_coding Interval_103750 chr3 52324357 52325482 + 0 NA intron (ENSMUSG00000044167.6, intron 1 of 2) protein_coding-intron (ENSMUSG00000044167.6, intron 1 of 2) 42678 ENSMUSG00000102844.1 ENSMUSG00000102844 ENSMUST00000193915 Gm38034 TEC Interval_121101 chr4 153041059 153041489 + 0 NA Intergenic Intergenic -27690 ENSMUSG00000080360.1 ENSMUSG00000080360 ENSMUST00000116710 Gm25779 miRNA Interval_98913 chr2 155974157 155974516 + 0 NA exon (ENSMUSG00000038241.16, exon 15 of 33) protein_coding-exon (ENSMUSG00000038241.16, exon 15 of 33) -11547 ENSMUSG00000038241.16 ENSMUSG00000038241 ENSMUST00000128683 Cep250 protein_coding Interval_71760 chr17 25912621 25913709 + 0 NA intron (ENSMUSG00000025730.14, intron 2 of 6) protein_coding-intron (ENSMUSG00000025730.14, intron 2 of 6) -5924 ENSMUSG00000084862.1 ENSMUSG00000084862 ENSMUST00000148064 Gm16278 antisense Interval_159266 chr8 92613351 92613927 + 0 NA Intergenic Intergenic -61187 ENSMUSG00000031738.14 ENSMUSG00000031738 ENSMUST00000167261 Irx6 protein_coding Interval_17997 chr10 81285426 81286795 + 0 NA promoter-TSS (ENSMUSG00000034917.8) protein_coding-promoter-TSS (ENSMUSG00000034917.8) 5105 ENSMUSG00000034917.8 ENSMUSG00000034917 ENSMUST00000218966 Tjp3 protein_coding Interval_67036 chr16 41750445 41750836 + 0 NA intron (ENSMUSG00000061080.11, intron 3 of 8) protein_coding-intron (ENSMUSG00000061080.11, intron 1 of 5) -319548 ENSMUSG00000101463.1 ENSMUSG00000101463 ENSMUST00000186327 Gm28750 antisense Interval_93291 chr2 71720497 71720815 + 0 NA intron (ENSMUSG00000064263.6, intron 1 of 3) lincRNA-intron (ENSMUSG00000064263.6, intron 1 of 3) 1239 ENSMUSG00000064263.6 ENSMUSG00000064263 ENSMUST00000079720 Platr26 lincRNA Interval_167845 chr9 73038846 73040124 + 0 NA promoter-TSS (ENSMUSG00000098332.2) protein_coding-promoter-TSS (ENSMUSG00000098332.2) -245 ENSMUSG00000098332.2 ENSMUSG00000098332 ENSMUST00000184319 Pigbos1 protein_coding Interval_47011 chr13 74340965 74341739 + 0 NA TTS (ENSMUSG00000090004.1) processed_pseudogene-TTS (ENSMUSG00000090004.1) 813 ENSMUSG00000090004.1 ENSMUSG00000090004 ENSMUST00000159003 Gm16125 processed_pseudogene Interval_53137 chr14 54668846 54669776 + 0 NA intron (ENSMUSG00000022185.19, intron 3 of 4) protein_coding-intron (ENSMUSG00000022185.19, intron 4 of 18) -16926 ENSMUSG00000040822.7 ENSMUSG00000040822 ENSMUST00000227269 1700123O20Rik protein_coding Interval_153311 chr7 143519461 143519921 + 0 NA intron (ENSMUSG00000059119.9, intron 14 of 15) protein_coding-intron (ENSMUSG00000059119.9, intron 14 of 15) 11829 ENSMUSG00000065118.1 ENSMUSG00000065118 ENSMUST00000083184 Gm23297 snoRNA Interval_126588 chr5 90500356 90501007 + 0 NA promoter-TSS (ENSMUSG00000054932.6) protein_coding-promoter-TSS (ENSMUSG00000054932.6) -6750 ENSMUSG00000054932.6 ENSMUSG00000054932 ENSMUST00000202209 Afp protein_coding Interval_135673 chr6 43022112 43022758 + 0 NA Intergenic Intergenic 41745 ENSMUSG00000091008.1 ENSMUSG00000091008 ENSMUST00000167638 Gm17472 IG_LV_gene Interval_109886 chr3 149484011 149485487 + 0 NA Intergenic Intergenic -39448 ENSMUSG00000106515.4 ENSMUSG00000106515 ENSMUST00000199503 Gm30382 lincRNA Interval_3942 chr1 64977620 64978589 + 0 NA Intergenic Intergenic 16500 ENSMUSG00000084416.3 ENSMUSG00000084416 ENSMUST00000120360 Rpl10a-ps1 processed_pseudogene Interval_14128 chr10 27900878 27901358 + 0 NA Intergenic Intergenic 31027 ENSMUSG00000112620.1 ENSMUSG00000112620 ENSMUST00000218873 Gm18972 processed_pseudogene Interval_112119 chr4 34818536 34819062 + 0 NA intron (ENSMUSG00000039967.14, intron 6 of 7) protein_coding-intron (ENSMUSG00000039967.14, intron 6 of 7) -24186 ENSMUSG00000082367.1 ENSMUSG00000082367 ENSMUST00000122250 Gm12363 processed_pseudogene Interval_84527 chr19 12253202 12253534 + 0 NA Intergenic Intergenic -5722 ENSMUSG00000097646.1 ENSMUSG00000097646 ENSMUST00000181346 Gm26864 processed_pseudogene Interval_28370 chr11 75432093 75432505 + 0 NA exon (ENSMUSG00000038224.12, exon 10 of 10) protein_coding-exon (ENSMUSG00000038224.12, exon 10 of 10) 4546 ENSMUSG00000084224.1 ENSMUSG00000084224 ENSMUST00000119634 Gm12337 processed_pseudogene Interval_100957 chr2 173620638 173620833 + 0 NA intron (ENSMUSG00000055897.13, intron 1 of 18) transcribed_unprocessed_pseudogene-intron (ENSMUSG00000055897.13, intron 1 of 18) -29422 ENSMUSG00000055897.13 ENSMUSG00000055897 ENSMUST00000133185 Ppp4r1l-ps transcribed_unprocessed_pseudogene Interval_36516 chr12 48158775 48159253 + 0 NA Intergenic Intergenic -111480 ENSMUSG00000111984.1 ENSMUSG00000111984 ENSMUST00000218240 Gm46327 unprocessed_pseudogene Interval_19125 chr10 94870575 94871251 + 0 NA TTS (ENSMUSG00000074785.5) protein_coding-TTS (ENSMUSG00000074785.5) 12879 ENSMUSG00000112736.1 ENSMUSG00000112736 ENSMUST00000220244 Gm48718 TEC Interval_109666 chr3 145864576 145865316 + 0 NA intron (ENSMUSG00000028194.15, intron 4 of 4) protein_coding-intron (ENSMUSG00000028194.15, intron 4 of 5) -14074 ENSMUSG00000105388.1 ENSMUSG00000105388 ENSMUST00000197973 Rpl36a-ps2 processed_pseudogene Interval_117342 chr4 123114660 123115064 + 0 NA TTS (ENSMUSG00000102997.1) TEC-TTS (ENSMUSG00000102997.1) -1404 ENSMUSG00000076438.5 ENSMUSG00000076438 ENSMUST00000102648 Oxct2b protein_coding Interval_70658 chr17 12868140 12868517 + 0 NA promoter-TSS (ENSMUSG00000068037.11) protein_coding-promoter-TSS (ENSMUSG00000068037.11) -3088 ENSMUSG00000092913.1 ENSMUSG00000092913 ENSMUST00000175172 Gm24085 miRNA Interval_77475 chr17 89486817 89487212 + 0 NA Intergenic Intergenic 107773 ENSMUSG00000117524.1 ENSMUSG00000117524 ENSMUST00000234513 Gm4719 lincRNA Interval_123631 chr5 33988511 33988885 + 0 NA Intergenic Intergenic 4364 ENSMUSG00000106743.1 ENSMUSG00000106743 ENSMUST00000201732 Gm42847 TEC Interval_19810 chr10 109494890 109495106 + 0 NA Intergenic Intergenic -108511 ENSMUSG00000112253.1 ENSMUSG00000112253 ENSMUST00000219849 Gm47329 processed_pseudogene Interval_32091 chr11 105207502 105208296 + 0 NA promoter-TSS (ENSMUSG00000020694.17) protein_coding-promoter-TSS (ENSMUSG00000020694.17) -954 ENSMUSG00000020694.17 ENSMUSG00000020694 ENSMUST00000146910 Tlk2 protein_coding Interval_46804 chr13 70840702 70842649 + 0 NA promoter-TSS (ENSMUSG00000049538.14) protein_coding-promoter-TSS (ENSMUSG00000049538.14) 133 ENSMUSG00000049538.14 ENSMUSG00000049538 ENSMUST00000130726 Adamts16 protein_coding Interval_113608 chr4 56962630 56965015 + 0 NA intron (ENSMUSG00000045589.7, intron 3 of 3) protein_coding-intron (ENSMUSG00000045589.7, intron 4 of 4) -16398 ENSMUSG00000055296.14 ENSMUSG00000055296 ENSMUST00000155625 Tmem245 protein_coding Interval_74272 chr17 47817786 47818857 + 0 NA intron (ENSMUSG00000032717.14, intron 2 of 2) protein_coding-intron (ENSMUSG00000032717.14, intron 4 of 4) 14951 ENSMUSG00000032717.14 ENSMUSG00000032717 ENSMUST00000129360 Mdfi protein_coding Interval_95459 chr2 109754581 109754798 + 0 NA Intergenic Intergenic 37845 ENSMUSG00000083915.1 ENSMUSG00000083915 ENSMUST00000120873 Gm13932 processed_pseudogene Interval_75290 chr17 65719695 65720133 + 0 NA intron (ENSMUSG00000056515.9, intron 2 of 6) protein_coding-intron (ENSMUSG00000056515.9, intron 2 of 6) 52726 ENSMUSG00000056515.9 ENSMUSG00000056515 ENSMUST00000233258 Rab31 protein_coding Interval_104191 chr3 60129757 60129934 + 0 NA Intergenic Intergenic -2098 ENSMUSG00000084647.1 ENSMUSG00000084647 ENSMUST00000122698 Gm24382 snRNA Interval_34972 chr12 16008829 16010492 + 0 NA intron (ENSMUSG00000113930.1, intron 2 of 9) lincRNA-intron (ENSMUSG00000113930.1, intron 2 of 9) 5885 ENSMUSG00000113930.1 ENSMUSG00000113930 ENSMUST00000223158 Gm36235 lincRNA Interval_159714 chr8 98772093 98772429 + 0 NA Intergenic Intergenic -97059 ENSMUSG00000080480.1 ENSMUSG00000080480 ENSMUST00000116830 Gm23494 snRNA Interval_15394 chr10 45381844 45382637 + 0 NA intron (ENSMUSG00000063804.8, intron 4 of 4) protein_coding-intron (ENSMUSG00000063804.8, intron 4 of 4) 28732 ENSMUSG00000071317.4 ENSMUSG00000071317 ENSMUST00000213557 Bves protein_coding Interval_42132 chr13 9070957 9071816 + 0 NA intron (ENSMUSG00000113543.1, intron 2 of 4) lincRNA-intron (ENSMUSG00000113543.1, intron 2 of 2) 5065 ENSMUSG00000113543.1 ENSMUSG00000113543 ENSMUST00000221989 Gm36264 lincRNA Interval_98827 chr2 155363470 155363761 + 0 NA Intergenic Intergenic -6191 ENSMUSG00000038383.16 ENSMUSG00000038383 ENSMUST00000124419 Pigu protein_coding Interval_128301 chr5 112411270 112413231 + 0 NA Intergenic Intergenic -18226 ENSMUSG00000029348.11 ENSMUSG00000029348 ENSMUST00000199095 Asphd2 protein_coding Interval_62761 chr15 96686282 96687294 + 0 NA TTS (ENSMUSG00000022462.7) protein_coding-TTS (ENSMUSG00000022462.7) 11903 ENSMUSG00000022462.7 ENSMUSG00000022462 ENSMUST00000229141 Slc38a2 protein_coding Interval_42946 chr13 21733544 21735797 + 0 NA promoter-TSS (ENSMUSG00000067455.5) protein_coding-promoter-TSS (ENSMUSG00000067455.5) -394 ENSMUSG00000067455.5 ENSMUSG00000067455 ENSMUST00000087714 H4c11 protein_coding Interval_21259 chr10 127526010 127527775 + 0 NA exon (ENSMUSG00000040258.6, exon 2 of 2) protein_coding-exon (ENSMUSG00000040258.6, exon 2 of 2) 7667 ENSMUSG00000040258.6 ENSMUSG00000040258 ENSMUST00000095266 Nxph4 protein_coding Interval_56531 chr14 120075411 120076411 + 0 NA Intergenic Intergenic -1599 ENSMUSG00000115133.1 ENSMUSG00000115133 ENSMUST00000226914 Gm20167 processed_pseudogene Interval_155327 chr8 31297267 31298405 + 0 NA Intergenic Intergenic -17022 ENSMUSG00000110133.1 ENSMUSG00000110133 ENSMUST00000209631 Gm8168 processed_pseudogene Interval_79045 chr18 24155214 24155656 + 0 NA Intergenic Intergenic -33482 ENSMUSG00000047989.11 ENSMUSG00000047989 ENSMUST00000125169 Ino80c protein_coding Interval_32696 chr11 109712900 109713882 + 0 NA intron (ENSMUSG00000020614.13, intron 1 of 11) protein_coding-intron (ENSMUSG00000020614.13, intron 1 of 10) 8888 ENSMUSG00000020614.13 ENSMUSG00000020614 ENSMUST00000144972 Fam20a protein_coding Interval_133377 chr6 4273839 4274140 + 0 NA Intergenic Intergenic -11140 ENSMUSG00000107510.1 ENSMUSG00000107510 ENSMUST00000204547 Gm44057 processed_pseudogene Interval_103524 chr3 46734249 46734991 + 0 NA Intergenic Intergenic 113499 ENSMUSG00000102589.1 ENSMUSG00000102589 ENSMUST00000195318 Gm37445 processed_pseudogene Interval_129339 chr5 119294687 119295096 + 0 NA Intergenic Intergenic -2354 ENSMUSG00000084548.1 ENSMUSG00000084548 ENSMUST00000122599 n-R5s175 rRNA Interval_120151 chr4 143073811 143075048 + 0 NA promoter-TSS (ENSMUSG00000110067.2) protein_coding-promoter-TSS (ENSMUSG00000110067.2) -663 ENSMUSG00000110067.2 ENSMUSG00000110067 ENSMUST00000238915 6330411D24Rik protein_coding Interval_118690 chr4 133211941 133213736 + 0 NA promoter-TSS (ENSMUSG00000049649.8) protein_coding-promoter-TSS (ENSMUSG00000049649.8) -68 ENSMUSG00000028865.14 ENSMUSG00000028865 ENSMUST00000134713 Cd164l2 protein_coding Interval_8762 chr1 150623108 150624123 + 0 NA intron (ENSMUSG00000066842.18, intron 78 of 105) protein_coding-intron (ENSMUSG00000066842.18, intron 78 of 106) -1684 ENSMUSG00000093650.2 ENSMUSG00000093650 ENSMUST00000177268 Gm20631 antisense Interval_83395 chr18 84857900 84859604 + 0 NA exon (ENSMUSG00000089744.2, exon 2 of 2) antisense-exon (ENSMUSG00000089744.2, exon 2 of 2) 834 ENSMUSG00000089744.2 ENSMUSG00000089744 ENSMUST00000160306 Gm16146 antisense Interval_61624 chr15 83017248 83017537 + 0 NA intron (ENSMUSG00000058099.16, intron 1 of 5) protein_coding-intron (ENSMUSG00000058099.16, intron 1 of 5) 5691 ENSMUSG00000058099.16 ENSMUSG00000058099 ENSMUST00000231204 Nfam1 protein_coding Interval_19544 chr10 102877856 102878497 + 0 NA Intergenic Intergenic 58805 ENSMUSG00000112046.1 ENSMUSG00000112046 ENSMUST00000219699 Gm5175 transcribed_processed_pseudogene Interval_81244 chr18 56720161 56720830 + 0 NA intron (ENSMUSG00000024590.8, intron 1 of 10) protein_coding-intron (ENSMUSG00000024590.8, intron 1 of 10) -7946 ENSMUSG00000024590.8 ENSMUSG00000024590 ENSMUST00000128651 Lmnb1 protein_coding Interval_29690 chr11 86080100 86080325 + 0 NA intron (ENSMUSG00000034329.16, intron 16 of 19) protein_coding-intron (ENSMUSG00000034329.16, intron 16 of 19) -105117 ENSMUSG00000080823.1 ENSMUSG00000080823 ENSMUST00000121382 Atp5l-ps2 processed_pseudogene Interval_161938 chr8 123894372 123894732 + 0 NA intron (ENSMUSG00000031972.5, intron 1 of 3) protein_coding-intron (ENSMUSG00000031972.5, intron 1 of 6) 199 ENSMUSG00000031972.5 ENSMUSG00000031972 ENSMUST00000212584 Acta1 protein_coding Interval_47856 chr13 93866344 93866972 + 0 NA intron (ENSMUSG00000042082.7, intron 5 of 7) protein_coding-intron (ENSMUSG00000042082.7, intron 5 of 7) 56653 ENSMUSG00000093106.1 ENSMUSG00000093106 ENSMUST00000175365 Gm25534 miRNA Interval_94409 chr2 90830207 90830430 + 0 NA intron (ENSMUSG00000040812.14, intron 19 of 21) protein_coding-intron (ENSMUSG00000040812.14, intron 19 of 21) -16913 ENSMUSG00000027282.17 ENSMUSG00000027282 ENSMUST00000142350 Mtch2 protein_coding Interval_134259 chr6 23939139 23939475 + 0 NA Intergenic Intergenic 30753 ENSMUSG00000043865.3 ENSMUSG00000043865 ENSMUST00000062463 Tas2r118 protein_coding Interval_39915 chr12 99743338 99743844 + 0 NA intron (ENSMUSG00000021176.6, intron 6 of 6) protein_coding-intron (ENSMUSG00000021176.6, intron 5 of 5) 18663 ENSMUSG00000113877.1 ENSMUSG00000113877 ENSMUST00000220762 Gm47208 TEC Interval_77981 chr18 6394340 6395552 + 0 NA Intergenic Intergenic -23286 ENSMUSG00000095614.1 ENSMUSG00000095614 ENSMUST00000179994 Gm6291 processed_pseudogene Interval_60496 chr15 74401100 74402093 + 0 NA intron (ENSMUSG00000118581.1, intron 4 of 4) unitary_pseudogene-intron (ENSMUSG00000118581.1, intron 4 of 4) 38848 ENSMUSG00000118581.1 ENSMUSG00000118581 ENSMUST00000239328 AC119183.1 unitary_pseudogene Interval_172760 chrX 48409608 48410733 + 0 NA TTS (ENSMUSG00000031103.12) protein_coding-TTS (ENSMUSG00000031103.12) 52962 ENSMUSG00000031103.12 ENSMUSG00000031103 ENSMUST00000140486 Elf4 protein_coding Interval_109276 chr3 138558561 138559092 + 0 NA exon (ENSMUSG00000028156.12, exon 8 of 8) protein_coding-exon (ENSMUSG00000028156.12, exon 8 of 8) 21735 ENSMUSG00000106353.1 ENSMUSG00000106353 ENSMUST00000199110 Gm43726 processed_pseudogene Interval_141270 chr6 126752519 126753331 + 0 NA Intergenic Intergenic -12251 ENSMUSG00000038077.7 ENSMUSG00000038077 ENSMUST00000112242 Kcna6 protein_coding Interval_82385 chr18 73597588 73598046 + 0 NA Intergenic Intergenic -13699 ENSMUSG00000064527.1 ENSMUSG00000064527 ENSMUST00000082593 Gm26438 misc_RNA Interval_3421 chr1 58190851 58191322 + 0 NA intron (ENSMUSG00000064294.12, intron 33 of 34) protein_coding-intron (ENSMUSG00000064294.12, intron 33 of 34) -20132 ENSMUSG00000038242.12 ENSMUSG00000038242 ENSMUST00000161926 Aox4 protein_coding Interval_3109 chr1 53510269 53510516 + 0 NA intron (ENSMUSG00000096141.2, intron 41 of 65) protein_coding-intron (ENSMUSG00000096141.2, intron 41 of 65) -66997 ENSMUSG00000092657.1 ENSMUSG00000092657 ENSMUST00000174916 Gm25240 miRNA Interval_27643 chr11 69243931 69245181 + 0 NA Intergenic Intergenic 3957 ENSMUSG00000089438.1 ENSMUSG00000089438 ENSMUST00000158813 Gm23194 snRNA Interval_68170 chr16 66575205 66575926 + 0 NA Intergenic Intergenic -81553 ENSMUSG00000092599.1 ENSMUSG00000092599 ENSMUST00000174502 1700010K23Rik antisense Interval_161121 chr8 117610530 117610975 + 0 NA exon (ENSMUSG00000034330.10, exon 27 of 33) protein_coding-exon (ENSMUSG00000034330.10, exon 27 of 33) 62937 ENSMUSG00000034308.13 ENSMUSG00000034308 ENSMUST00000174450 Sdr42e1 protein_coding Interval_99159 chr2 157663608 157664771 + 0 NA Intergenic Intergenic 49612 ENSMUSG00000077290.1 ENSMUSG00000077290 ENSMUST00000104102 Gm25407 snoRNA Interval_169846 chr9 102456189 102456458 + 0 NA Intergenic Intergenic -30467 ENSMUSG00000111859.1 ENSMUSG00000111859 ENSMUST00000213941 Gm47983 TEC Interval_17581 chr10 77918091 77918294 + 0 NA intron (ENSMUSG00000009292.18, intron 10 of 15) protein_coding-intron (ENSMUSG00000009292.18, intron 25 of 31) -4341 ENSMUSG00000093443.1 ENSMUSG00000093443 ENSMUST00000177097 Gm22871 snoRNA Interval_149901 chr7 102448021 102448368 + 0 NA TTS (ENSMUSG00000030978.10) protein_coding-TTS (ENSMUSG00000030978.10) -8276 ENSMUSG00000030978.10 ENSMUSG00000030978 ENSMUST00000209630 Rrm1 protein_coding Interval_123559 chr5 33489827 33490165 + 0 NA Intergenic Intergenic -52532 ENSMUSG00000107248.1 ENSMUSG00000107248 ENSMUST00000200726 Gm43851 lincRNA Interval_15054 chr10 42246278 42247676 + 0 NA TTS (ENSMUSG00000048756.11) protein_coding-TTS (ENSMUSG00000048756.11) 11389 ENSMUSG00000048756.11 ENSMUSG00000048756 ENSMUST00000105501 Foxo3 protein_coding Interval_115853 chr4 105240324 105240965 + 0 NA Intergenic Intergenic 83297 ENSMUSG00000028517.8 ENSMUSG00000028517 ENSMUST00000064139 Plpp3 protein_coding Interval_87996 chr19 57657258 57658988 + 0 NA intron (ENSMUSG00000054843.9, intron 9 of 28) protein_coding-intron (ENSMUSG00000054843.9, intron 9 of 28) 47089 ENSMUSG00000054843.9 ENSMUSG00000054843 ENSMUST00000077282 Atrnl1 protein_coding Interval_150463 chr7 110866093 110867869 + 0 NA Intergenic Intergenic -4028 ENSMUSG00000030787.4 ENSMUSG00000030787 ENSMUST00000209319 Lyve1 protein_coding Interval_134529 chr6 29355855 29356147 + 0 NA promoter-TSS (ENSMUSG00000029767.16) protein_coding-promoter-TSS (ENSMUSG00000029767.16) -470 ENSMUSG00000029767.16 ENSMUSG00000029767 ENSMUST00000138523 Calu protein_coding Interval_42138 chr13 9114463 9114734 + 0 NA intron (ENSMUSG00000033499.14, intron 1 of 15) protein_coding-intron (ENSMUSG00000033499.14, intron 1 of 16) 5293 ENSMUSG00000088442.1 ENSMUSG00000088442 ENSMUST00000157817 Gm23553 misc_RNA Interval_163861 chr9 27256611 27256877 + 0 NA Intergenic Intergenic 36600 ENSMUSG00000111387.1 ENSMUSG00000111387 ENSMUST00000217080 Gm48803 lincRNA Interval_169207 chr9 95503064 95503429 + 0 NA intron (ENSMUSG00000032407.14, intron 1 of 27) protein_coding-intron (ENSMUSG00000032407.14, intron 1 of 26) 8639 ENSMUSG00000032407.14 ENSMUSG00000032407 ENSMUST00000188017 U2surp protein_coding Interval_45870 chr13 58640377 58640602 + 0 NA Intergenic Intergenic 28350 ENSMUSG00000114380.1 ENSMUSG00000114380 ENSMUST00000225253 Gm47942 processed_pseudogene Interval_109659 chr3 145790553 145790788 + 0 NA intron (ENSMUSG00000028194.15, intron 1 of 5) protein_coding-intron (ENSMUSG00000028194.15, intron 1 of 5) -19809 ENSMUSG00000028194.15 ENSMUSG00000028194 ENSMUST00000127193 Ddah1 protein_coding Interval_37269 chr12 64076760 64077137 + 0 NA Intergenic Intergenic -66800 ENSMUSG00000113208.1 ENSMUSG00000113208 ENSMUST00000222001 Gm48421 lincRNA Interval_27807 chr11 70097105 70098164 + 0 NA promoter-TSS (ENSMUSG00000040963.15) protein_coding-promoter-TSS (ENSMUSG00000040963.15) -58 ENSMUSG00000040963.15 ENSMUSG00000040963 ENSMUST00000179757 Asgr2 protein_coding Interval_850 chr1 12657538 12657819 + 0 NA Intergenic Intergenic 1811 ENSMUSG00000098163.1 ENSMUSG00000098163 ENSMUST00000182390 Gm6216 processed_pseudogene Interval_128670 chr5 114620323 114620701 + 0 NA Intergenic Intergenic 24387 ENSMUSG00000014158.12 ENSMUSG00000014158 ENSMUST00000212469 Trpv4 protein_coding Interval_107074 chr3 103345708 103345996 + 0 NA intron (ENSMUSG00000033014.12, intron 2 of 5) protein_coding-intron (ENSMUSG00000033014.12, intron 15 of 19) 13709 ENSMUSG00000104925.1 ENSMUSG00000104925 ENSMUST00000198850 Gm43061 sense_intronic Interval_91586 chr2 44102503 44102733 + 0 NA intron (ENSMUSG00000049744.15, intron 1 of 2) protein_coding-intron (ENSMUSG00000049744.15, intron 8 of 13) -37294 ENSMUSG00000085089.1 ENSMUSG00000085089 ENSMUST00000139948 Arhgap15os antisense Interval_136422 chr6 54330376 54330576 + 0 NA TTS (ENSMUSG00000045725.5) protein_coding-TTS (ENSMUSG00000045725.5) -3135 ENSMUSG00000073067.10 ENSMUSG00000073067 ENSMUST00000135612 9130019P16Rik processed_transcript Interval_102825 chr3 31603366 31603673 + 0 NA Intergenic Intergenic 87066 ENSMUSG00000103499.5 ENSMUSG00000103499 ENSMUST00000192046 Gm6558 transcribed_unprocessed_pseudogene Interval_48176 chr13 97006424 97009061 + 0 NA Intergenic Intergenic 7557 ENSMUSG00000113934.1 ENSMUSG00000113934 ENSMUST00000222278 Gm48609 processed_pseudogene Interval_102145 chr3 18610750 18610976 + 0 NA promoter-TSS (ENSMUSG00000104091.1) processed_pseudogene-promoter-TSS (ENSMUSG00000104091.1) -32 ENSMUSG00000104091.1 ENSMUSG00000104091 ENSMUST00000192198 Gm37317 processed_pseudogene Interval_135188 chr6 37377120 37378633 + 0 NA intron (ENSMUSG00000038648.5, intron 2 of 11) protein_coding-intron (ENSMUSG00000038648.5, intron 2 of 11) -41341 ENSMUSG00000038648.5 ENSMUSG00000038648 ENSMUST00000128534 Creb3l2 protein_coding Interval_126034 chr5 76983235 76984702 + 0 NA promoter-TSS (ENSMUSG00000036323.14) protein_coding-promoter-TSS (ENSMUSG00000036323.14) 9247 ENSMUSG00000036323.14 ENSMUSG00000036323 ENSMUST00000144741 Srp72 protein_coding Interval_3410 chr1 58110256 58111582 + 0 NA Intergenic Intergenic -2267 ENSMUSG00000064294.12 ENSMUSG00000064294 ENSMUST00000160815 Aox3 protein_coding Interval_28057 chr11 72541443 72542473 + 0 NA intron (ENSMUSG00000020798.14, intron 1 of 10) protein_coding-intron (ENSMUSG00000020798.14, intron 1 of 10) 31372 ENSMUSG00000081675.1 ENSMUSG00000081675 ENSMUST00000120676 Gm12712 processed_pseudogene Interval_88159 chr19 60067539 60067788 + 0 NA Intergenic Intergenic -11769 ENSMUSG00000118291.1 ENSMUSG00000118291 ENSMUST00000237917 Csf1r-ps processed_pseudogene Interval_116271 chr4 109196612 109196833 + 0 NA intron (ENSMUSG00000028559.17, intron 1 of 23) protein_coding-intron (ENSMUSG00000028559.17, intron 1 of 23) 5512 ENSMUSG00000028559.17 ENSMUSG00000028559 ENSMUST00000159758 Osbpl9 protein_coding Interval_95690 chr2 114191377 114191798 + 0 NA Intergenic Intergenic -4563 ENSMUSG00000040383.16 ENSMUSG00000040383 ENSMUST00000154317 Aqr protein_coding Interval_159002 chr8 88635270 88636208 + 0 NA exon (ENSMUSG00000031662.8, exon 1 of 1) protein_coding-exon (ENSMUSG00000031662.8, exon 1 of 1) 362 ENSMUSG00000031662.8 ENSMUSG00000031662 ENSMUST00000209806 Snx20 protein_coding Interval_167761 chr9 72590821 72590987 + 0 NA intron (ENSMUSG00000037674.15, intron 3 of 5) protein_coding-intron (ENSMUSG00000037674.15, intron 2 of 8) -4019 ENSMUSG00000102672.1 ENSMUSG00000102672 ENSMUST00000192251 Gm37105 TEC Interval_117933 chr4 127168192 127169901 + 0 NA promoter-TSS (ENSMUSG00000042388.14) protein_coding-promoter-TSS (ENSMUSG00000042388.14) -27558 ENSMUSG00000082220.3 ENSMUSG00000082220 ENSMUST00000119616 Gm12943 processed_pseudogene Interval_76971 chr17 85263582 85263852 + 0 NA intron (ENSMUSG00000071037.6, intron 3 of 10) protein_coding-intron (ENSMUSG00000071037.6, intron 3 of 10) 173111 ENSMUSG00000071037.6 ENSMUSG00000071037 ENSMUST00000234501 Camkmt protein_coding Interval_120621 chr4 149730588 149731615 + 0 NA promoter-TSS (ENSMUSG00000044700.15) protein_coding-promoter-TSS (ENSMUSG00000044700.15) 6669 ENSMUSG00000044700.15 ENSMUSG00000044700 ENSMUST00000145405 Tmem201 protein_coding Interval_163805 chr9 26454462 26454754 + 0 NA Intergenic Intergenic -68306 ENSMUSG00000111124.1 ENSMUSG00000111124 ENSMUST00000214282 Gm48373 processed_pseudogene Interval_21064 chr10 125799057 125799270 + 0 NA Intergenic Intergenic -167071 ENSMUSG00000020105.9 ENSMUSG00000020105 ENSMUST00000219974 Lrig3 protein_coding Interval_166175 chr9 57261121 57263116 + 0 NA promoter-TSS (ENSMUSG00000032300.7) protein_coding-promoter-TSS (ENSMUSG00000032300.7) -609 ENSMUSG00000032300.7 ENSMUSG00000032300 ENSMUST00000217657 1700017B05Rik protein_coding Interval_71373 chr17 22769739 22770002 + 0 NA Intergenic Intergenic 29925 ENSMUSG00000098164.2 ENSMUSG00000098164 ENSMUST00000182063 Gm5493 lincRNA Interval_87458 chr19 52078809 52079599 + 0 NA Intergenic Intergenic -158871 ENSMUSG00000117867.1 ENSMUSG00000117867 ENSMUST00000237555 Gm50330 lincRNA Interval_53048 chr14 53881476 53882223 + 0 NA intron (ENSMUSG00000076864.9, intron 1 of 1) TR_V_gene-intron (ENSMUSG00000076864.9, intron 1 of 1) 237 ENSMUSG00000076864.9 ENSMUSG00000076864 ENSMUST00000187163 Trdv1 TR_V_gene Interval_14993 chr10 41760688 41761204 + 0 NA intron (ENSMUSG00000102114.2, intron 1 of 3) protein_coding-intron (ENSMUSG00000019813.16, intron 1 of 10) 14225 ENSMUSG00000102114.2 ENSMUSG00000102114 ENSMUST00000190793 BC048559 antisense Interval_73622 chr17 41332139 41332366 + 0 NA Intergenic Intergenic -13745 ENSMUSG00000098030.1 ENSMUSG00000098030 ENSMUST00000182716 Gm6771 processed_pseudogene Interval_1981 chr1 35452154 35453244 + 0 NA Intergenic Intergenic 198598 ENSMUSG00000104417.1 ENSMUSG00000104417 ENSMUST00000195168 Gm37068 lincRNA Interval_4453 chr1 74278831 74279426 + 0 NA TTS (ENSMUSG00000006299.13) protein_coding-TTS (ENSMUSG00000006299.13) 578 ENSMUSG00000064272.3 ENSMUSG00000064272 ENSMUST00000077985 Gpbar1 protein_coding Interval_115562 chr4 100803425 100803815 + 0 NA intron (ENSMUSG00000028532.14, intron 1 of 26) protein_coding-intron (ENSMUSG00000028532.14, intron 1 of 26) -191090 ENSMUSG00000028532.14 ENSMUSG00000028532 ENSMUST00000136430 Cachd1 protein_coding Interval_48392 chr13 98714141 98714403 + 0 NA intron (ENSMUSG00000114689.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000114689.1, intron 1 of 1) 2238 ENSMUSG00000114689.1 ENSMUSG00000114689 ENSMUST00000224536 Gm9465 lincRNA Interval_64824 chr16 16202018 16202282 + 0 NA Intergenic Intergenic -11168 ENSMUSG00000041957.15 ENSMUSG00000041957 ENSMUST00000039408 Pkp2 protein_coding Interval_91596 chr2 44336986 44337478 + 0 NA intron (ENSMUSG00000049744.15, intron 13 of 14) protein_coding-intron (ENSMUSG00000049744.15, intron 13 of 13) -91703 ENSMUSG00000088124.1 ENSMUSG00000088124 ENSMUST00000157499 Gm22867 snRNA Interval_131856 chr5 140400930 140401167 + 0 NA Intergenic Intergenic -26291 ENSMUSG00000098319.1 ENSMUSG00000098319 ENSMUST00000184833 Mir7038 miRNA Interval_97929 chr2 145859782 145860927 + 0 NA exon (ENSMUSG00000001768.16, exon 9 of 13) protein_coding-exon (ENSMUSG00000001768.16, exon 9 of 13) -17932 ENSMUSG00000092758.1 ENSMUSG00000092758 ENSMUST00000175017 Gm25026 miRNA Interval_87233 chr19 47089892 47091190 + 0 NA promoter-TSS (ENSMUSG00000025047.9) protein_coding-promoter-TSS (ENSMUSG00000025047.9) 93 ENSMUSG00000071528.4 ENSMUSG00000071528 ENSMUST00000236170 Atp5md protein_coding Interval_19861 chr10 110627306 110628046 + 0 NA Intergenic Intergenic 7127 ENSMUSG00000112872.1 ENSMUSG00000112872 ENSMUST00000218721 Gm47058 processed_pseudogene Interval_160720 chr8 111803421 111803838 + 0 NA intron (ENSMUSG00000031954.6, intron 5 of 6) protein_coding-intron (ENSMUSG00000031954.6, intron 5 of 6) 50662 ENSMUSG00000031954.6 ENSMUSG00000031954 ENSMUST00000034432 Cfdp1 protein_coding Interval_151532 chr7 123326365 123326641 + 0 NA intron (ENSMUSG00000030766.15, intron 3 of 19) protein_coding-intron (ENSMUSG00000030766.15, intron 3 of 18) 43348 ENSMUSG00000030766.15 ENSMUSG00000030766 ENSMUST00000205805 Arhgap17 protein_coding Interval_69483 chr16 93815893 93817677 + 0 NA intron (ENSMUSG00000116927.1, intron 1 of 2) antisense-intron (ENSMUSG00000116927.1, intron 1 of 2) 16234 ENSMUSG00000116927.1 ENSMUSG00000116927 ENSMUST00000231503 Gm30881 antisense Interval_9479 chr1 157525865 157526250 + 0 NA promoter-TSS (ENSMUSG00000026589.14) protein_coding-promoter-TSS (ENSMUSG00000026589.14) -11994 ENSMUSG00000026589.14 ENSMUSG00000026589 ENSMUST00000155665 Sec16b protein_coding Interval_43840 chr13 37513724 37514836 + 0 NA Intergenic Intergenic 4562 ENSMUSG00000100022.2 ENSMUSG00000100022 ENSMUST00000224398 Gm29590 lincRNA Interval_99851 chr2 165316603 165317899 + 0 NA promoter-TSS (ENSMUSG00000017670.16) protein_coding-promoter-TSS (ENSMUSG00000017670.16) -5609 ENSMUSG00000017670.16 ENSMUSG00000017670 ENSMUST00000128690 Elmo2 protein_coding Interval_94916 chr2 101707912 101708239 + 0 NA Intergenic Intergenic 23860 ENSMUSG00000027164.8 ENSMUSG00000027164 ENSMUST00000144063 Traf6 protein_coding Interval_156978 chr8 63678338 63678845 + 0 NA Intergenic Intergenic 60986 ENSMUSG00000109825.1 ENSMUSG00000109825 ENSMUST00000210048 Gm45589 lincRNA Interval_65801 chr16 28935595 28936888 + 0 NA Intergenic Intergenic 15114 ENSMUSG00000116861.1 ENSMUSG00000116861 ENSMUST00000232466 Gm8253 processed_pseudogene Interval_115176 chr4 93368518 93369323 + 0 NA Intergenic Intergenic -33409 ENSMUSG00000054000.5 ENSMUSG00000054000 ENSMUST00000066774 Tusc1 protein_coding Interval_172422 chrX 18825010 18825503 + 0 NA Intergenic Intergenic -95548 ENSMUSG00000082757.1 ENSMUSG00000082757 ENSMUST00000118343 Gm6923 processed_pseudogene Interval_27352 chr11 66905742 66907137 + 0 NA intron (ENSMUSG00000072834.4, intron 3 of 3) antisense-intron (ENSMUSG00000072834.4, intron 3 of 3) -5542 ENSMUSG00000048070.4 ENSMUSG00000048070 ENSMUST00000123434 Pirt protein_coding Interval_139104 chr6 95184443 95184672 + 0 NA Intergenic Intergenic 56021 ENSMUSG00000107934.1 ENSMUSG00000107934 ENSMUST00000204307 Gm17822 processed_pseudogene Interval_138362 chr6 87618097 87618585 + 0 NA Intergenic Intergenic 20594 ENSMUSG00000108118.1 ENSMUSG00000108118 ENSMUST00000204650 Gm34312 lincRNA Interval_61193 chr15 79904129 79905619 + 0 NA intron (ENSMUSG00000009585.18, intron 1 of 2) protein_coding-intron (ENSMUSG00000009585.18, intron 4 of 7) 4532 ENSMUSG00000009585.18 ENSMUSG00000009585 ENSMUST00000175827 Apobec3 protein_coding Interval_96183 chr2 120342835 120343517 + 0 NA TTS (ENSMUSG00000027291.15) protein_coding-TTS (ENSMUSG00000027291.15) 9945 ENSMUSG00000027291.15 ENSMUSG00000027291 ENSMUST00000126526 Vps39 protein_coding Interval_92746 chr2 65037224 65038416 + 0 NA Intergenic Intergenic -62051 ENSMUSG00000026888.14 ENSMUSG00000026888 ENSMUST00000146807 Grb14 protein_coding Interval_68771 chr16 85977048 85977279 + 0 NA Intergenic Intergenic -38292 ENSMUSG00000116669.1 ENSMUSG00000116669 ENSMUST00000232085 Gm49570 processed_pseudogene Interval_155274 chr8 29979142 29979409 + 0 NA Intergenic Intergenic 102685 ENSMUSG00000109597.1 ENSMUSG00000109597 ENSMUST00000211611 Gm45492 processed_pseudogene Interval_59048 chr15 42257389 42258334 + 0 NA Intergenic Intergenic -1081 ENSMUSG00000115985.1 ENSMUSG00000115985 ENSMUST00000230056 Gm18531 processed_pseudogene Interval_149306 chr7 97324899 97326177 + 0 NA exon (ENSMUSG00000035713.15, exon 2 of 11) protein_coding-exon (ENSMUSG00000035713.15, exon 2 of 11) -6789 ENSMUSG00000044952.5 ENSMUSG00000044952 ENSMUST00000054107 Kctd21 protein_coding Interval_84297 chr19 9915911 9916193 + 0 NA Intergenic Intergenic 7894 ENSMUSG00000080659.1 ENSMUSG00000080659 ENSMUST00000117009 Gm24484 miRNA Interval_85008 chr19 21341417 21341815 + 0 NA Intergenic Intergenic -28333 ENSMUSG00000118342.1 ENSMUSG00000118342 ENSMUST00000236886 Gm50255 lincRNA Interval_168327 chr9 78762150 78762465 + 0 NA Intergenic Intergenic 3293 ENSMUSG00000111139.1 ENSMUSG00000111139 ENSMUST00000217312 Gm47497 processed_pseudogene Interval_54218 chr14 66377633 66378276 + 0 NA Intergenic Intergenic 33658 ENSMUSG00000022044.14 ENSMUSG00000022044 ENSMUST00000147477 Stmn4 protein_coding Interval_67358 chr16 47883711 47884214 + 0 NA Intergenic Intergenic 125522 ENSMUSG00000088083.1 ENSMUSG00000088083 ENSMUST00000157458 Gm25339 misc_RNA Interval_593 chr1 8435999 8436309 + 0 NA intron (ENSMUSG00000025909.16, intron 3 of 4) protein_coding-intron (ENSMUSG00000025909.16, intron 5 of 6) 17337 ENSMUSG00000102647.1 ENSMUSG00000102647 ENSMUST00000192338 Gm38024 TEC Interval_172421 chrX 18796614 18797334 + 0 NA Intergenic Intergenic -123830 ENSMUSG00000082757.1 ENSMUSG00000082757 ENSMUST00000118343 Gm6923 processed_pseudogene Interval_139561 chr6 101107164 101107565 + 0 NA intron (ENSMUSG00000107427.1, intron 1 of 3) antisense-intron (ENSMUSG00000107427.1, intron 1 of 3) -36928 ENSMUSG00000107954.1 ENSMUSG00000107954 ENSMUST00000204522 Gm43942 TEC Interval_89387 chr2 20294464 20295082 + 0 NA intron (ENSMUSG00000036617.17, intron 3 of 7) protein_coding-intron (ENSMUSG00000036617.17, intron 3 of 7) 14254 ENSMUSG00000065253.1 ENSMUSG00000065253 ENSMUST00000083319 Gm23970 snRNA Interval_133944 chr6 16220996 16221623 + 0 NA Intergenic Intergenic 12181 ENSMUSG00000107885.1 ENSMUSG00000107885 ENSMUST00000203972 Gm43993 processed_pseudogene Interval_160052 chr8 106046206 106047588 + 0 NA TTS (ENSMUSG00000031901.12) protein_coding-TTS (ENSMUSG00000031901.12) -1811 ENSMUSG00000031901.12 ENSMUSG00000031901 ENSMUST00000144904 Dus2 protein_coding Interval_167694 chr9 72089737 72090143 + 0 NA intron (ENSMUSG00000032228.16, intron 3 of 19) protein_coding-intron (ENSMUSG00000032228.16, intron 3 of 19) 21711 ENSMUSG00000032228.16 ENSMUSG00000032228 ENSMUST00000184806 Tcf12 protein_coding Interval_109996 chr3 152383962 152385017 + 0 NA TTS (ENSMUSG00000025437.15) protein_coding-TTS (ENSMUSG00000025437.15) 728 ENSMUSG00000105710.1 ENSMUSG00000105710 ENSMUST00000200075 Gm43859 TEC Interval_174238 chrX 140503794 140504276 + 0 NA Intergenic Intergenic 44494 ENSMUSG00000031431.13 ENSMUSG00000031431 ENSMUST00000152048 Tsc22d3 protein_coding Interval_29728 chr11 86435890 86437116 + 0 NA TTS (ENSMUSG00000064526.1) snRNA-TTS (ENSMUSG00000064526.1) 912 ENSMUSG00000064526.1 ENSMUSG00000064526 ENSMUST00000082592 Gm26439 snRNA Interval_4989 chr1 83727207 83728145 + 0 NA intron (ENSMUSG00000100580.6, intron 3 of 4) lincRNA-intron (ENSMUSG00000100580.6, intron 3 of 4) -68236 ENSMUSG00000094946.1 ENSMUSG00000094946 ENSMUST00000178653 Gm25754 miRNA Interval_139401 chr6 99857476 99857800 + 0 NA Intergenic Intergenic -17324 ENSMUSG00000107713.1 ENSMUSG00000107713 ENSMUST00000205215 Gm6681 processed_pseudogene Interval_114655 chr4 83499973 83501311 + 0 NA exon (ENSMUSG00000082416.1, exon 1 of 1) processed_pseudogene-exon (ENSMUSG00000082416.1, exon 1 of 1) 119 ENSMUSG00000082416.1 ENSMUSG00000082416 ENSMUST00000121795 Gm11414 processed_pseudogene Interval_124159 chr5 38728177 38728393 + 0 NA intron (ENSMUSG00000039315.15, intron 15 of 18) protein_coding-intron (ENSMUSG00000039315.15, intron 15 of 18) -7699 ENSMUSG00000079528.9 ENSMUSG00000079528 ENSMUST00000177682 Clnkos antisense Interval_89641 chr2 23906823 23907811 + 0 NA Intergenic Intergenic -1124 ENSMUSG00000083373.1 ENSMUSG00000083373 ENSMUST00000117708 Gm13392 processed_pseudogene Interval_6978 chr1 121489841 121490876 + 0 NA promoter-TSS (ENSMUSG00000026339.18) protein_coding-promoter-TSS (ENSMUSG00000026339.18) 2845 ENSMUSG00000085857.1 ENSMUSG00000085857 ENSMUST00000152863 Gm15392 antisense Interval_18075 chr10 82120979 82121239 + 0 NA Intergenic Intergenic -6904 ENSMUSG00000078435.5 ENSMUSG00000078435 ENSMUST00000105314 AU041133 protein_coding Interval_37763 chr12 71830444 71832561 + 0 NA intron (ENSMUSG00000034574.10, intron 1 of 14) protein_coding-intron (ENSMUSG00000034574.10, intron 1 of 25) 424 ENSMUSG00000034574.10 ENSMUSG00000034574 ENSMUST00000221317 Daam1 protein_coding Interval_107559 chr3 108497401 108498310 + 0 NA promoter-TSS (ENSMUSG00000080673.1) snRNA-promoter-TSS (ENSMUSG00000080673.1) -263 ENSMUSG00000080673.1 ENSMUSG00000080673 ENSMUST00000117023 Gm23336 snRNA Interval_142521 chr6 143062596 143062942 + 0 NA intron (ENSMUSG00000030279.15, intron 8 of 24) protein_coding-intron (ENSMUSG00000030279.15, intron 9 of 24) 37321 ENSMUSG00000030279.15 ENSMUSG00000030279 ENSMUST00000205079 C2cd5 protein_coding Interval_87919 chr19 57116100 57116325 + 0 NA exon (ENSMUSG00000025085.16, exon 2 of 2) protein_coding-exon (ENSMUSG00000025085.16, exon 2 of 2) -157748 ENSMUSG00000117684.1 ENSMUSG00000117684 ENSMUST00000237596 4930449E18Rik antisense Interval_15044 chr10 42187967 42188615 + 0 NA intron (ENSMUSG00000048756.11, intron 3 of 3) protein_coding-intron (ENSMUSG00000048756.11, intron 3 of 3) 70075 ENSMUSG00000048756.11 ENSMUSG00000048756 ENSMUST00000105501 Foxo3 protein_coding Interval_21071 chr10 125902391 125903411 + 0 NA Intergenic Intergenic -63333 ENSMUSG00000020105.9 ENSMUSG00000020105 ENSMUST00000219974 Lrig3 protein_coding Interval_20470 chr10 117797251 117798152 + 0 NA TTS (ENSMUSG00000112525.1) processed_pseudogene-TTS (ENSMUSG00000112525.1) 1064 ENSMUSG00000112525.1 ENSMUSG00000112525 ENSMUST00000219949 Gm47899 processed_pseudogene Interval_63290 chr15 100115915 100116742 + 0 NA intron (ENSMUSG00000023026.16, intron 2 of 37) protein_coding-intron (ENSMUSG00000023026.16, intron 2 of 37) -8167 ENSMUSG00000116311.1 ENSMUSG00000116311 ENSMUST00000229204 4930478M13Rik antisense Interval_38171 chr12 76152352 76153563 + 0 NA promoter-TSS (ENSMUSG00000046580.10) processed_pseudogene-promoter-TSS (ENSMUSG00000046580.10) -330 ENSMUSG00000046580.10 ENSMUSG00000046580 ENSMUST00000121461 Gm7862 processed_pseudogene Interval_157674 chr8 72219212 72221179 + 0 NA exon (ENSMUSG00000003039.9, exon 2 of 3) protein_coding-exon (ENSMUSG00000003039.9, exon 2 of 3) 431 ENSMUSG00000003039.9 ENSMUSG00000003039 ENSMUST00000212117 Fam32a protein_coding Interval_29764 chr11 86646325 86647059 + 0 NA intron (ENSMUSG00000018171.9, intron 2 of 2) protein_coding-intron (ENSMUSG00000018171.9, intron 5 of 11) -15666 ENSMUSG00000083992.1 ENSMUSG00000083992 ENSMUST00000117851 Gm11478 processed_pseudogene Interval_126717 chr5 92248653 92249891 + 0 NA exon (ENSMUSG00000029410.11, exon 4 of 16) protein_coding-exon (ENSMUSG00000029410.11, exon 4 of 16) -20251 ENSMUSG00000029410.11 ENSMUSG00000029410 ENSMUST00000031359 Ppef2 protein_coding Interval_70353 chr17 8920448 8920709 + 0 NA exon (ENSMUSG00000023868.17, exon 5 of 5) protein_coding-exon (ENSMUSG00000023868.17, exon 5 of 5) -67764 ENSMUSG00000023873.13 ENSMUSG00000023873 ENSMUST00000136954 1700010I14Rik protein_coding Interval_61039 chr15 78908512 78909378 + 0 NA TTS (ENSMUSG00000022436.16) protein_coding-TTS (ENSMUSG00000022436.16) 2527 ENSMUSG00000022436.16 ENSMUSG00000022436 ENSMUST00000229803 Sh3bp1 protein_coding Interval_148324 chr7 80514314 80514727 + 0 NA intron (ENSMUSG00000030528.12, intron 1 of 14) protein_coding-intron (ENSMUSG00000030528.12, intron 2 of 21) 6733 ENSMUSG00000091989.1 ENSMUSG00000091989 ENSMUST00000166096 Ndufab1-ps processed_pseudogene Interval_35643 chr12 26533079 26533569 + 0 NA Intergenic Intergenic -46533 ENSMUSG00000113059.1 ENSMUSG00000113059 ENSMUST00000220530 Gm46344 processed_pseudogene Interval_125469 chr5 67401706 67402067 + 0 NA intron (ENSMUSG00000092060.4, intron 3 of 4) protein_coding-intron (ENSMUSG00000092060.4, intron 3 of 4) 25731 ENSMUSG00000092060.4 ENSMUSG00000092060 ENSMUST00000201972 Bend4 protein_coding Interval_134858 chr6 32726396 32727262 + 0 NA Intergenic Intergenic 25459 ENSMUSG00000106873.1 ENSMUSG00000106873 ENSMUST00000202626 BC049739 lincRNA Interval_120693 chr4 150137953 150138510 + 0 NA intron (ENSMUSG00000028976.10, intron 2 of 4) protein_coding-intron (ENSMUSG00000028976.10, intron 7 of 13) -1322 ENSMUSG00000028976.10 ENSMUSG00000028976 ENSMUST00000151504 Slc2a5 protein_coding Interval_46775 chr13 70186531 70188493 + 0 NA intron (ENSMUSG00000113573.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000113573.1, intron 1 of 2) 18680 ENSMUSG00000077594.1 ENSMUSG00000077594 ENSMUST00000104406 Gm26018 snoRNA Interval_33547 chr11 117135097 117137486 + 0 NA intron (ENSMUSG00000020823.16, intron 2 of 11) protein_coding-intron (ENSMUSG00000020823.16, intron 2 of 16) 1693 ENSMUSG00000084052.1 ENSMUSG00000084052 ENSMUST00000121669 Gm11745 processed_pseudogene Interval_39276 chr12 86402554 86404504 + 0 NA intron (ENSMUSG00000021255.17, intron 1 of 6) protein_coding-intron (ENSMUSG00000021255.17, intron 1 of 6) 55552 ENSMUSG00000113230.1 ENSMUSG00000113230 ENSMUST00000221001 Gm48101 processed_pseudogene Interval_165988 chr9 55228807 55229199 + 0 NA intron (ENSMUSG00000032311.17, intron 5 of 7) protein_coding-intron (ENSMUSG00000032311.17, intron 4 of 6) 20017 ENSMUSG00000032309.15 ENSMUSG00000032309 ENSMUST00000133795 Fbxo22 protein_coding Interval_21172 chr10 127032863 127033229 + 0 NA exon (ENSMUSG00000080115.3, exon 3 of 3) protein_coding-exon (ENSMUSG00000080115.3, exon 3 of 3) -2243 ENSMUSG00000040521.11 ENSMUSG00000040521 ENSMUST00000134917 Tsfm protein_coding Interval_99007 chr2 156612901 156615408 + 0 NA promoter-TSS (ENSMUSG00000086118.1) processed_transcript-promoter-TSS (ENSMUSG00000086118.1) -732 ENSMUSG00000086118.1 ENSMUSG00000086118 ENSMUST00000124676 Gm14169 processed_transcript Interval_139932 chr6 112871386 112871630 + 0 NA intron (ENSMUSG00000030257.16, intron 1 of 21) protein_coding-intron (ENSMUSG00000030257.16, intron 1 of 9) -42049 ENSMUSG00000030257.16 ENSMUSG00000030257 ENSMUST00000143475 Srgap3 protein_coding Interval_47853 chr13 93796382 93796604 + 0 NA intron (ENSMUSG00000042082.7, intron 3 of 5) protein_coding-intron (ENSMUSG00000042082.7, intron 3 of 7) 5716 ENSMUSG00000093480.1 ENSMUSG00000093480 ENSMUST00000176635 Mir5624 miRNA Interval_29050 chr11 80060727 80061863 + 0 NA intron (ENSMUSG00000017561.16, intron 1 of 6) protein_coding-intron (ENSMUSG00000017561.16, intron 2 of 7) 19566 ENSMUSG00000017561.16 ENSMUSG00000017561 ENSMUST00000178280 Crlf3 protein_coding Interval_72337 chr17 29276569 29277106 + 0 NA exon (ENSMUSG00000052712.17, exon 1 of 2) protein_coding-exon (ENSMUSG00000052712.17, exon 1 of 2) 2683 ENSMUSG00000052712.17 ENSMUSG00000052712 ENSMUST00000150874 BC004004 protein_coding Interval_91948 chr2 51964469 51965074 + 0 NA intron (ENSMUSG00000026946.9, intron 1 of 7) protein_coding-intron (ENSMUSG00000026946.9, intron 1 of 7) 8723 ENSMUSG00000026946.9 ENSMUSG00000026946 ENSMUST00000123521 Nmi protein_coding Interval_25857 chr11 52199389 52199622 + 0 NA Intergenic Intergenic 10552 ENSMUSG00000083175.1 ENSMUSG00000083175 ENSMUST00000119795 Gm12206 processed_pseudogene Interval_61081 chr15 79120268 79120879 + 0 NA intron (ENSMUSG00000033039.10, intron 4 of 15) protein_coding-intron (ENSMUSG00000033039.10, intron 4 of 15) -11113 ENSMUSG00000033039.10 ENSMUSG00000033039 ENSMUST00000230202 Micall1 protein_coding Interval_141564 chr6 129336670 129336935 + 0 NA Intergenic Intergenic -5889 ENSMUSG00000053063.11 ENSMUSG00000053063 ENSMUST00000133756 Clec12a protein_coding Interval_32932 chr11 113201075 113202002 + 0 NA exon (ENSMUSG00000087259.7, exon 1 of 3) lincRNA-exon (ENSMUSG00000087259.7, exon 1 of 3) 8131 ENSMUSG00000085421.1 ENSMUSG00000085421 ENSMUST00000130373 4732490B19Rik lincRNA Interval_130866 chr5 132750837 132752198 + 0 NA Intergenic Intergenic -44636 ENSMUSG00000103500.1 ENSMUSG00000103500 ENSMUST00000192042 Gm38373 TEC Interval_67827 chr16 57514381 57514996 + 0 NA intron (ENSMUSG00000043336.14, intron 4 of 4) protein_coding-intron (ENSMUSG00000043336.14, intron 4 of 4) 92176 ENSMUSG00000022748.8 ENSMUSG00000022748 ENSMUST00000232413 Cmss1 protein_coding Interval_53732 chr14 61283154 61283426 + 0 NA TTS (ENSMUSG00000114920.1) processed_pseudogene-TTS (ENSMUSG00000114920.1) 1498 ENSMUSG00000114920.1 ENSMUSG00000114920 ENSMUST00000225947 Gm19097 processed_pseudogene Interval_20528 chr10 118568941 118569256 + 0 NA Intergenic Intergenic -13746 ENSMUSG00000112230.2 ENSMUSG00000112230 ENSMUST00000220034 Ifngas1 lincRNA Interval_15122 chr10 42686221 42687499 + 0 NA intron (ENSMUSG00000038280.12, intron 2 of 3) protein_coding-intron (ENSMUSG00000038280.12, intron 2 of 5) 7894 ENSMUSG00000038280.12 ENSMUSG00000038280 ENSMUST00000154048 Ostm1 protein_coding Interval_76096 chr17 74927778 74928410 + 0 NA Intergenic Intergenic 22207 ENSMUSG00000117560.1 ENSMUSG00000117560 ENSMUST00000234897 Gm31759 lincRNA Interval_93115 chr2 70347414 70347616 + 0 NA intron (ENSMUSG00000042064.13, intron 29 of 33) protein_coding-intron (ENSMUSG00000042064.13, intron 30 of 34) -111467 ENSMUSG00000047965.9 ENSMUSG00000047965 ENSMUST00000140507 Rpl9-ps7 processed_pseudogene Interval_91712 chr2 48578540 48579307 + 0 NA Intergenic Intergenic -121678 ENSMUSG00000086353.1 ENSMUSG00000086353 ENSMUST00000127672 Gm13481 lincRNA Interval_172537 chrX 36024959 36026128 + 0 NA promoter-TSS (ENSMUSG00000118439.1) processed_pseudogene-promoter-TSS (ENSMUSG00000118439.1) -363 ENSMUSG00000118439.1 ENSMUSG00000118439 ENSMUST00000238773 Gm50468 processed_pseudogene Interval_150134 chr7 107229355 107229599 + 0 NA Intergenic Intergenic -13545 ENSMUSG00000057215.6 ENSMUSG00000057215 ENSMUST00000133824 Platr28 lincRNA Interval_160855 chr8 113878296 113878862 + 0 NA Intergenic Intergenic -33275 ENSMUSG00000053399.9 ENSMUSG00000053399 ENSMUST00000212527 Adamts18 protein_coding Interval_153561 chr8 3424338 3427096 + 0 NA promoter-TSS (ENSMUSG00000004568.13) protein_coding-promoter-TSS (ENSMUSG00000004568.13) -32322 ENSMUSG00000108955.1 ENSMUSG00000108955 ENSMUST00000207266 Gm44775 TEC Interval_159770 chr8 102336819 102337034 + 0 NA Intergenic Intergenic -186968 ENSMUSG00000088596.1 ENSMUSG00000088596 ENSMUST00000157971 Gm24602 snRNA Interval_131116 chr5 135232481 135233001 + 0 NA intron (ENSMUSG00000002748.7, intron 13 of 18) protein_coding-intron (ENSMUSG00000002748.7, intron 13 of 18) 18489 ENSMUSG00000049551.2 ENSMUSG00000049551 ENSMUST00000062572 Fzd9 protein_coding Interval_35970 chr12 32989401 32990587 + 0 NA Intergenic Intergenic 10016 ENSMUSG00000089136.1 ENSMUSG00000089136 ENSMUST00000158511 Gm24922 snRNA Interval_108075 chr3 121387104 121388157 + 0 NA Intergenic Intergenic -6951 ENSMUSG00000106455.1 ENSMUSG00000106455 ENSMUST00000197896 Gm5711 processed_pseudogene Interval_22327 chr11 8843572 8843828 + 0 NA intron (ENSMUSG00000046634.12, intron 39 of 42) protein_coding-intron (ENSMUSG00000046634.12, intron 46 of 49) -36852 ENSMUSG00000081539.1 ENSMUSG00000081539 ENSMUST00000121505 Gm11990 processed_pseudogene Interval_36220 chr12 39843246 39844519 + 0 NA Intergenic Intergenic -31568 ENSMUSG00000113761.1 ENSMUSG00000113761 ENSMUST00000221392 Gm4263 transcribed_processed_pseudogene Interval_93247 chr2 71442896 71444270 + 0 NA Intergenic Intergenic 7031 ENSMUSG00000087789.1 ENSMUSG00000087789 ENSMUST00000157164 Gm23166 snRNA Interval_155429 chr8 33516431 33518088 + 0 NA promoter-TSS (ENSMUSG00000009628.14) protein_coding-promoter-TSS (ENSMUSG00000009628.14) 521 ENSMUSG00000009628.14 ENSMUSG00000009628 ENSMUST00000009772 Tex15 protein_coding Interval_55919 chr14 102329235 102329640 + 0 NA TTS (ENSMUSG00000095037.1) snoRNA-TTS (ENSMUSG00000095037.1) 224 ENSMUSG00000095037.1 ENSMUSG00000095037 ENSMUST00000180276 Gm22347 snoRNA Interval_158778 chr8 86378424 86379534 + 0 NA Intergenic Intergenic 86478 ENSMUSG00000065737.1 ENSMUSG00000065737 ENSMUST00000083803 Gm24490 snRNA Interval_131477 chr5 137472110 137472546 + 0 NA intron (ENSMUSG00000079173.11, intron 5 of 86) protein_coding-intron (ENSMUSG00000079173.11, intron 6 of 87) 13488 ENSMUSG00000029711.13 ENSMUSG00000029711 ENSMUST00000111039 Epo protein_coding Interval_16823 chr10 68576795 68577293 + 0 NA Intergenic Intergenic 46950 ENSMUSG00000112793.1 ENSMUSG00000112793 ENSMUST00000220037 Gm32872 antisense Interval_56504 chr14 119298826 119299139 + 0 NA intron (ENSMUSG00000053465.6, intron 1 of 1) protein_coding-intron (ENSMUSG00000053465.6, intron 1 of 1) 20558 ENSMUSG00000115684.1 ENSMUSG00000115684 ENSMUST00000227446 Gm6087 processed_pseudogene Interval_115806 chr4 104725747 104726095 + 0 NA intron (ENSMUSG00000028519.16, intron 11 of 14) protein_coding-intron (ENSMUSG00000028519.16, intron 11 of 14) -73287 ENSMUSG00000029656.13 ENSMUSG00000029656 ENSMUST00000123892 C8b protein_coding Interval_100157 chr2 167380239 167380524 + 0 NA Intergenic Intergenic -66526 ENSMUSG00000017929.13 ENSMUSG00000017929 ENSMUST00000133557 B4galt5 protein_coding Interval_27738 chr11 69734457 69735005 + 0 NA exon (ENSMUSG00000005198.15, exon 29 of 29) protein_coding-exon (ENSMUSG00000005198.15, exon 29 of 29) 2617 ENSMUSG00000005198.15 ENSMUSG00000005198 ENSMUST00000151586 Polr2a protein_coding Interval_49318 chr13 110696316 110697175 + 0 NA Intergenic Intergenic 12833 ENSMUSG00000114775.1 ENSMUSG00000114775 ENSMUST00000225669 Gm33172 lincRNA Interval_114258 chr4 70259379 70260002 + 0 NA intron (ENSMUSG00000039298.16, intron 25 of 36) protein_coding-intron (ENSMUSG00000039298.16, intron 22 of 33) -10317 ENSMUSG00000080902.1 ENSMUSG00000080902 ENSMUST00000120944 Ywhaq-ps3 transcribed_processed_pseudogene Interval_108765 chr3 131136995 131137514 + 0 NA exon (ENSMUSG00000104612.1, exon 1 of 1) TEC-exon (ENSMUSG00000104612.1, exon 1 of 1) 469 ENSMUSG00000104612.1 ENSMUSG00000104612 ENSMUST00000200349 Gm42449 TEC Interval_29553 chr11 84869528 84871520 + 0 NA promoter-TSS (ENSMUSG00000020530.14) protein_coding-promoter-TSS (ENSMUSG00000020530.14) 214 ENSMUSG00000020530.14 ENSMUSG00000020530 ENSMUST00000167429 Ggnbp2 protein_coding Interval_109731 chr3 146386184 146386411 + 0 NA Intergenic Intergenic 1547 ENSMUSG00000088218.1 ENSMUSG00000088218 ENSMUST00000157593 Gm22078 snRNA Interval_28995 chr11 79790372 79791263 + 0 NA intron (ENSMUSG00000086474.2, intron 1 of 1) lincRNA-intron (ENSMUSG00000086474.2, intron 4 of 4) 14355 ENSMUSG00000086474.2 ENSMUSG00000086474 ENSMUST00000162268 9130204K15Rik lincRNA Interval_85177 chr19 23401641 23402538 + 0 NA intron (ENSMUSG00000033207.7, intron 2 of 12) protein_coding-intron (ENSMUSG00000033207.7, intron 2 of 13) -16254 ENSMUSG00000118092.1 ENSMUSG00000118092 ENSMUST00000235597 Gm50445 lincRNA Interval_17131 chr10 71778361 71779329 + 0 NA Intergenic Intergenic 21002 ENSMUSG00000111999.1 ENSMUSG00000111999 ENSMUST00000220341 Gm5080 processed_pseudogene Interval_98583 chr2 153393274 153393914 + 0 NA exon (ENSMUSG00000042548.14, exon 2 of 4) protein_coding-exon (ENSMUSG00000042548.14, exon 2 of 4) -20255 ENSMUSG00000082283.1 ENSMUSG00000082283 ENSMUST00000119815 Gm14472 processed_pseudogene Interval_95641 chr2 113327166 113328175 + 0 NA promoter-TSS (ENSMUSG00000044042.19) protein_coding-promoter-TSS (ENSMUSG00000044042.19) 39397 ENSMUSG00000093660.1 ENSMUSG00000093660 ENSMUST00000176208 Gm26505 snRNA Interval_2236 chr1 37258635 37259108 + 0 NA intron (ENSMUSG00000026114.14, intron 6 of 6) protein_coding-intron (ENSMUSG00000026114.14, intron 5 of 5) 40492 ENSMUSG00000026114.14 ENSMUSG00000026114 ENSMUST00000027288 Cnga3 protein_coding Interval_84511 chr19 11990926 11992801 + 0 NA intron (ENSMUSG00000024687.11, intron 13 of 13) protein_coding-intron (ENSMUSG00000024687.11, intron 13 of 13) 25922 ENSMUSG00000024687.11 ENSMUSG00000024687 ENSMUST00000025590 Osbp protein_coding Interval_171343 chr9 116544071 116544301 + 0 NA Intergenic Intergenic 213018 ENSMUSG00000110752.1 ENSMUSG00000110752 ENSMUST00000217456 D730003K21Rik lincRNA Interval_117889 chr4 126887606 126887980 + 0 NA intron (ENSMUSG00000042446.16, intron 17 of 23) protein_coding-intron (ENSMUSG00000042446.16, intron 23 of 29) -26681 ENSMUSG00000088984.1 ENSMUSG00000088984 ENSMUST00000158359 Gm25604 snoRNA Interval_34210 chr11 121309814 121310855 + 0 NA TTS (ENSMUSG00000039275.9) protein_coding-TTS (ENSMUSG00000039275.9) 19590 ENSMUSG00000039275.9 ENSMUSG00000039275 ENSMUST00000151492 Foxk2 protein_coding Interval_68286 chr16 72562660 72564683 + 0 NA promoter-TSS (ENSMUSG00000022883.11) protein_coding-promoter-TSS (ENSMUSG00000022883.11) -191230 ENSMUSG00000116910.1 ENSMUSG00000116910 ENSMUST00000232381 Gm49670 processed_pseudogene Interval_4216 chr1 71657899 71659299 + 0 NA intron (ENSMUSG00000073652.10, intron 2 of 3) antisense-intron (ENSMUSG00000073652.10, intron 2 of 3) -5427 ENSMUSG00000026193.15 ENSMUSG00000026193 ENSMUST00000186736 Fn1 protein_coding Interval_67877 chr16 58522710 58523888 + 0 NA promoter-TSS (ENSMUSG00000022747.17) protein_coding-promoter-TSS (ENSMUSG00000022747.17) -9115 ENSMUSG00000022747.17 ENSMUSG00000022747 ENSMUST00000232391 St3gal6 protein_coding Interval_15108 chr10 42633151 42633704 + 0 NA intron (ENSMUSG00000038280.12, intron 2 of 6) protein_coding-intron (ENSMUSG00000038280.12, intron 2 of 5) -45539 ENSMUSG00000038280.12 ENSMUSG00000038280 ENSMUST00000154048 Ostm1 protein_coding Interval_4260 chr1 72219464 72220424 + 0 NA Intergenic Intergenic -6296 ENSMUSG00000094655.1 ENSMUSG00000094655 ENSMUST00000178786 Gm25360 snRNA Interval_143618 chr7 13259979 13261911 + 0 NA exon (ENSMUSG00000070814.15, exon 4 of 5) protein_coding-exon (ENSMUSG00000070814.15, exon 4 of 5) 16783 ENSMUSG00000092427.1 ENSMUSG00000092427 ENSMUST00000172759 Vmn1r-ps69 unprocessed_pseudogene Interval_144562 chr7 25910058 25910332 + 0 NA intron (ENSMUSG00000030483.14, intron 1 of 8) protein_coding-intron (ENSMUSG00000030483.14, intron 1 of 9) -6571 ENSMUSG00000030483.14 ENSMUSG00000030483 ENSMUST00000144140 Cyp2b10 protein_coding Interval_122678 chr5 24617398 24617691 + 0 NA intron (ENSMUSG00000028949.13, intron 2 of 13) protein_coding-intron (ENSMUSG00000028949.13, intron 2 of 13) 5592 ENSMUSG00000028949.13 ENSMUSG00000028949 ENSMUST00000199393 Smarcd3 protein_coding Interval_97246 chr2 132600260 132600655 + 0 NA intron (ENSMUSG00000074783.10, intron 1 of 3) lincRNA-intron (ENSMUSG00000074783.10, intron 1 of 3) 2262 ENSMUSG00000074783.10 ENSMUSG00000074783 ENSMUST00000138751 AU019990 lincRNA Interval_123848 chr5 35935315 35935529 + 0 NA intron (ENSMUSG00000029094.12, intron 1 of 14) protein_coding-intron (ENSMUSG00000029094.12, intron 1 of 16) 17525 ENSMUSG00000082692.2 ENSMUSG00000082692 ENSMUST00000119066 H2af-ps processed_pseudogene Interval_60139 chr15 66220907 66221232 + 0 NA intron (ENSMUSG00000056258.9, intron 1 of 14) protein_coding-intron (ENSMUSG00000056258.9, intron 1 of 14) 64982 ENSMUSG00000056258.9 ENSMUSG00000056258 ENSMUST00000183633 Kcnq3 protein_coding Interval_111186 chr4 14506549 14506975 + 0 NA intron (ENSMUSG00000040569.13, intron 2 of 4) protein_coding-intron (ENSMUSG00000040569.13, intron 16 of 18) 72871 ENSMUSG00000081239.3 ENSMUSG00000081239 ENSMUST00000121022 Gm11836 processed_pseudogene Interval_16283 chr10 61936353 61937405 + 0 NA intron (ENSMUSG00000058806.15, intron 2 of 40) protein_coding-intron (ENSMUSG00000058806.15, intron 2 of 33) -22745 ENSMUSG00000112574.1 ENSMUSG00000112574 ENSMUST00000218711 Gm5750 processed_pseudogene Interval_41610 chr12 116938278 116938707 + 0 NA intron (ENSMUSG00000056553.14, intron 11 of 22) protein_coding-intron (ENSMUSG00000056553.14, intron 11 of 22) -85390 ENSMUSG00000113795.1 ENSMUSG00000113795 ENSMUST00000220994 Gm48119 processed_pseudogene Interval_95040 chr2 103400508 103401262 + 0 NA Intergenic Intergenic -10803 ENSMUSG00000027186.15 ENSMUSG00000027186 ENSMUST00000152055 Elf5 protein_coding Interval_108469 chr3 127480215 127481143 + 0 NA promoter-TSS (ENSMUSG00000105116.1) miRNA-promoter-TSS (ENSMUSG00000105116.1) -441 ENSMUSG00000105116.1 ENSMUSG00000105116 ENSMUST00000196760 Gm44494 miRNA Interval_71270 chr17 21753214 21754596 + 0 NA intron (ENSMUSG00000061544.13, intron 5 of 5) protein_coding-intron (ENSMUSG00000061544.13, intron 5 of 5) 20181 ENSMUSG00000061544.13 ENSMUSG00000061544 ENSMUST00000182603 Zfp229 protein_coding Interval_65208 chr16 20535208 20535985 + 0 NA promoter-TSS (ENSMUSG00000022841.15) protein_coding-promoter-TSS (ENSMUSG00000022841.15) 77 ENSMUSG00000022841.15 ENSMUSG00000022841 ENSMUST00000150537 Ap2m1 protein_coding Interval_73787 chr17 43642947 43643597 + 0 NA exon (ENSMUSG00000023912.10, exon 9 of 9) protein_coding-exon (ENSMUSG00000023912.10, exon 9 of 9) -13006 ENSMUSG00000040140.15 ENSMUSG00000040140 ENSMUST00000233077 Tdrd6 protein_coding Interval_128409 chr5 113174879 113175762 + 0 NA exon (ENSMUSG00000051339.10, exon 6 of 13) protein_coding-exon (ENSMUSG00000051339.10, exon 6 of 13) -9086 ENSMUSG00000106206.1 ENSMUSG00000106206 ENSMUST00000196549 Gm43094 TEC Interval_140472 chr6 118531085 118531370 + 0 NA intron (ENSMUSG00000007827.10, intron 18 of 33) protein_coding-intron (ENSMUSG00000007827.10, intron 18 of 33) -7992 ENSMUSG00000007827.10 ENSMUSG00000007827 ENSMUST00000188022 Ankrd26 protein_coding Interval_72090 chr17 27984273 27985734 + 0 NA intron (ENSMUSG00000024219.16, intron 4 of 24) protein_coding-intron (ENSMUSG00000024219.16, intron 4 of 24) 2611 ENSMUSG00000117130.1 ENSMUSG00000117130 ENSMUST00000232846 Gm49802 sense_intronic Interval_22349 chr11 9003119 9003363 + 0 NA intron (ENSMUSG00000020413.11, intron 4 of 6) protein_coding-intron (ENSMUSG00000020413.11, intron 5 of 7) 7887 ENSMUSG00000020413.11 ENSMUSG00000020413 ENSMUST00000127578 Hus1 protein_coding Interval_33412 chr11 116426287 116427524 + 0 NA Intergenic Intergenic -7604 ENSMUSG00000050628.6 ENSMUSG00000050628 ENSMUST00000144310 Ubald2 protein_coding Interval_89849 chr2 25973318 25973590 + 0 NA intron (ENSMUSG00000026933.17, intron 1 of 2) protein_coding-intron (ENSMUSG00000026933.17, intron 1 of 16) 9828 ENSMUSG00000026933.17 ENSMUSG00000026933 ENSMUST00000127823 Camsap1 protein_coding Interval_135984 chr6 49240086 49242792 + 0 NA Intergenic Intergenic -13412 ENSMUSG00000107962.1 ENSMUSG00000107962 ENSMUST00000204899 Gm43980 TEC Interval_120615 chr4 149710163 149710947 + 0 NA Intergenic Intergenic 27215 ENSMUSG00000044700.15 ENSMUSG00000044700 ENSMUST00000145405 Tmem201 protein_coding Interval_135506 chr6 39735836 39736128 + 0 NA Intergenic Intergenic 70060 ENSMUSG00000029918.9 ENSMUSG00000029918 ENSMUST00000139992 Mrps33 protein_coding Interval_46862 chr13 72760666 72760920 + 0 NA Intergenic Intergenic -8638 ENSMUSG00000113837.1 ENSMUSG00000113837 ENSMUST00000221207 Gm47902 lincRNA Interval_128710 chr5 114858726 114859756 + 0 NA promoter-TSS (ENSMUSG00000029564.12) protein_coding-promoter-TSS (ENSMUSG00000029564.12) 142 ENSMUSG00000107108.2 ENSMUSG00000107108 ENSMUST00000201635 Gm9936 antisense Interval_107706 chr3 111487043 111487270 + 0 NA Intergenic Intergenic -164299 ENSMUSG00000106100.1 ENSMUSG00000106100 ENSMUST00000199881 Gm9314 processed_pseudogene Interval_174603 chrX 159751749 159752023 + 0 NA intron (ENSMUSG00000040990.17, intron 1 of 16) protein_coding-intron (ENSMUSG00000040990.17, intron 2 of 19) 163421 ENSMUSG00000083906.1 ENSMUSG00000083906 ENSMUST00000119345 Gm15186 processed_pseudogene Interval_70711 chr17 13747630 13748091 + 0 NA intron (ENSMUSG00000038347.15, intron 1 of 2) protein_coding-intron (ENSMUSG00000038347.15, intron 1 of 3) 12224 ENSMUSG00000038347.15 ENSMUSG00000038347 ENSMUST00000155166 Tcte2 protein_coding Interval_109231 chr3 138121380 138121620 + 0 NA intron (ENSMUSG00000028158.14, intron 5 of 19) protein_coding-intron (ENSMUSG00000028158.14, intron 3 of 17) 17584 ENSMUSG00000104776.1 ENSMUSG00000104776 ENSMUST00000196625 Gm43691 antisense Interval_48868 chr13 104171541 104172727 + 0 NA intron (ENSMUSG00000021711.17, intron 1 of 12) protein_coding-intron (ENSMUSG00000021711.17, intron 1 of 12) 6273 ENSMUSG00000021711.17 ENSMUSG00000021711 ENSMUST00000142745 Trappc13 protein_coding Interval_110465 chr3 158683117 158683522 + 0 NA Intergenic Intergenic -121185 ENSMUSG00000028176.13 ENSMUSG00000028176 ENSMUST00000198284 Lrrc7 protein_coding Interval_134097 chr6 19892306 19892614 + 0 NA Intergenic Intergenic 104407 ENSMUSG00000107067.1 ENSMUSG00000107067 ENSMUST00000201774 Gm42581 processed_pseudogene Interval_97146 chr2 131752713 131754159 + 0 NA Intergenic Intergenic -31598 ENSMUSG00000086831.1 ENSMUSG00000086831 ENSMUST00000138080 Gm14280 antisense Interval_20708 chr10 120405205 120406249 + 0 NA intron (ENSMUSG00000056758.14, intron 3 of 5) protein_coding-intron (ENSMUSG00000056758.14, intron 3 of 4) 16204 ENSMUSG00000090191.1 ENSMUSG00000090191 ENSMUST00000161291 9230105E05Rik antisense Interval_65158 chr16 20240577 20241648 + 0 NA promoter-TSS (ENSMUSG00000116913.1) antisense-promoter-TSS (ENSMUSG00000116913.1) 85 ENSMUSG00000116913.1 ENSMUSG00000116913 ENSMUST00000231237 Gm49566 antisense Interval_148568 chr7 82727598 82727788 + 0 NA intron (ENSMUSG00000038563.14, intron 15 of 19) protein_coding-intron (ENSMUSG00000038563.14, intron 15 of 19) 12101 ENSMUSG00000108984.1 ENSMUSG00000108984 ENSMUST00000208664 Gm44916 TEC Interval_41515 chr12 115663914 115664467 + 0 NA Intergenic Intergenic 5177 ENSMUSG00000105737.1 ENSMUSG00000105737 ENSMUST00000200580 Gm6105 processed_pseudogene Interval_109007 chr3 134815098 134815923 + 0 NA Intergenic Intergenic -13497 ENSMUSG00000028172.5 ENSMUSG00000028172 ENSMUST00000029822 Tacr3 protein_coding Interval_164068 chr9 31271431 31271802 + 0 NA Intergenic Intergenic -3205 ENSMUSG00000091003.2 ENSMUSG00000091003 ENSMUST00000164658 Gm7244 processed_pseudogene Interval_89526 chr2 21908852 21909875 + 0 NA Intergenic Intergenic -114308 ENSMUSG00000077572.1 ENSMUSG00000077572 ENSMUST00000104384 Gm24886 snoRNA Interval_62328 chr15 90229633 90230041 + 0 NA exon (ENSMUSG00000075470.2, exon 3 of 3) protein_coding-exon (ENSMUSG00000075470.2, exon 3 of 3) 5477 ENSMUSG00000099319.1 ENSMUSG00000099319 ENSMUST00000183650 Mir7648 miRNA Interval_53771 chr14 61632693 61633205 + 0 NA promoter-TSS (ENSMUSG00000092995.1) miRNA-promoter-TSS (ENSMUSG00000092995.1) -839 ENSMUSG00000093007.1 ENSMUSG00000093007 ENSMUST00000175266 Mir15a miRNA Interval_174817 chrX 167356622 167356906 + 0 NA intron (ENSMUSG00000025742.5, intron 4 of 6) protein_coding-intron (ENSMUSG00000025742.5, intron 4 of 6) -4691 ENSMUSG00000086258.1 ENSMUSG00000086258 ENSMUST00000150690 Gm15239 antisense Interval_9867 chr1 163510358 163510655 + 0 NA Intergenic Intergenic -96871 ENSMUSG00000101869.1 ENSMUSG00000101869 ENSMUST00000185992 Gm29500 lincRNA Interval_128130 chr5 111186371 111187335 + 0 NA intron (ENSMUSG00000033209.17, intron 6 of 22) protein_coding-intron (ENSMUSG00000033209.17, intron 7 of 23) -10287 ENSMUSG00000105027.1 ENSMUSG00000105027 ENSMUST00000197532 Gm43676 TEC Interval_2382 chr1 38855605 38856731 + 0 NA Intergenic Intergenic -19794 ENSMUSG00000048814.11 ENSMUSG00000048814 ENSMUST00000191724 Lonrf2 protein_coding Interval_62608 chr15 95549458 95549664 + 0 NA Intergenic Intergenic -21383 ENSMUSG00000022454.17 ENSMUSG00000022454 ENSMUST00000075275 Nell2 protein_coding Interval_164453 chr9 37133182 37133944 + 0 NA intron (ENSMUSG00000035934.16, intron 1 of 1) protein_coding-intron (ENSMUSG00000035934.16, intron 1 of 12) 6061 ENSMUSG00000111254.1 ENSMUSG00000111254 ENSMUST00000216206 Gm48717 TEC Interval_101933 chr3 12327953 12329245 + 0 NA Intergenic Intergenic 56010 ENSMUSG00000103339.1 ENSMUSG00000103339 ENSMUST00000191859 Gm37996 processed_pseudogene Interval_124752 chr5 53667979 53668694 + 0 NA Intergenic Intergenic 29704 ENSMUSG00000039191.12 ENSMUSG00000039191 ENSMUST00000202092 Rbpj protein_coding Interval_150053 chr7 105433705 105435406 + 0 NA exon (ENSMUSG00000030898.15, exon 4 of 5) protein_coding-exon (ENSMUSG00000030898.15, exon 4 of 5) 8738 ENSMUSG00000030898.15 ENSMUSG00000030898 ENSMUST00000181339 Cckbr protein_coding Interval_21991 chr11 5611845 5612427 + 0 NA intron (ENSMUSG00000020481.15, intron 13 of 25) protein_coding-intron (ENSMUSG00000020481.15, intron 11 of 26) -22003 ENSMUSG00000081021.1 ENSMUSG00000081021 ENSMUST00000120982 Gm11964 processed_pseudogene Interval_118243 chr4 129762667 129762898 + 0 NA promoter-TSS (ENSMUSG00000080944.1) processed_pseudogene-promoter-TSS (ENSMUSG00000080944.1) -346 ENSMUSG00000099322.1 ENSMUSG00000099322 ENSMUST00000183434 Gm28017 miRNA Interval_123156 chr5 30176625 30176846 + 0 NA intron (ENSMUSG00000059447.13, intron 8 of 8) protein_coding-intron (ENSMUSG00000059447.13, intron 9 of 15) 5996 ENSMUSG00000088113.1 ENSMUSG00000088113 ENSMUST00000157488 Mir1960 miRNA Interval_40840 chr12 108782258 108782550 + 0 NA Intergenic Intergenic 10339 ENSMUSG00000114045.1 ENSMUSG00000114045 ENSMUST00000223001 Gm34220 TEC Interval_70484 chr17 10602710 10603462 + 0 NA intron (ENSMUSG00000037196.6, intron 2 of 4) protein_coding-intron (ENSMUSG00000037196.6, intron 2 of 4) 27981 ENSMUSG00000037196.6 ENSMUSG00000037196 ENSMUST00000160599 Pacrg protein_coding Interval_51933 chr14 34071587 34071903 + 0 NA intron (ENSMUSG00000047441.4, intron 15 of 16) protein_coding-intron (ENSMUSG00000047441.4, intron 15 of 16) -13008 ENSMUSG00000115489.1 ENSMUSG00000115489 ENSMUST00000227780 Gm49129 processed_pseudogene Interval_152314 chr7 131662260 131662853 + 0 NA intron (ENSMUSG00000030849.18, intron 2 of 6) protein_coding-intron (ENSMUSG00000030849.18, intron 2 of 6) 12326 ENSMUSG00000109066.1 ENSMUSG00000109066 ENSMUST00000207218 Gm4585 processed_pseudogene Interval_61622 chr15 83008399 83009544 + 0 NA intron (ENSMUSG00000058099.16, intron 4 of 5) protein_coding-intron (ENSMUSG00000058099.16, intron 4 of 5) 14112 ENSMUSG00000058099.16 ENSMUSG00000058099 ENSMUST00000231204 Nfam1 protein_coding Interval_13147 chr10 12488399 12490366 + 0 NA intron (ENSMUSG00000019820.11, intron 4 of 24) protein_coding-intron (ENSMUSG00000019820.11, intron 53 of 73) -67786 ENSMUSG00000112816.1 ENSMUSG00000112816 ENSMUST00000220361 Gm48798 TEC Interval_151490 chr7 123051673 123052531 + 0 NA intron (ENSMUSG00000109814.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000109814.1, intron 1 of 3) 20687 ENSMUSG00000109814.1 ENSMUSG00000109814 ENSMUST00000209402 Gm45847 lincRNA Interval_3290 chr1 55755215 55755966 + 0 NA Intergenic Intergenic 53565 ENSMUSG00000038349.10 ENSMUSG00000038349 ENSMUST00000187059 Plcl1 protein_coding Interval_173782 chrX 104069753 104070269 + 0 NA TTS (ENSMUSG00000077199.2) snoRNA-TTS (ENSMUSG00000077199.2) 315 ENSMUSG00000077199.2 ENSMUSG00000077199 ENSMUST00000104011 Gm22266 snoRNA Interval_158001 chr8 77787296 77788150 + 0 NA Intergenic Intergenic -19812 ENSMUSG00000087761.1 ENSMUSG00000087761 ENSMUST00000157136 Gm23981 snRNA Interval_172249 chrX 11912026 11912376 + 0 NA TTS (ENSMUSG00000083439.1) processed_pseudogene-TTS (ENSMUSG00000083439.1) 1088 ENSMUSG00000083439.1 ENSMUSG00000083439 ENSMUST00000121919 Gm14491 processed_pseudogene Interval_173394 chrX 87083892 87084613 + 0 NA intron (ENSMUSG00000052372.10, intron 5 of 10) protein_coding-intron (ENSMUSG00000052372.10, intron 4 of 9) 291778 ENSMUSG00000083779.1 ENSMUSG00000083779 ENSMUST00000122089 Gm14775 processed_pseudogene Interval_44207 chr13 42103100 42103470 + 0 NA intron (ENSMUSG00000021366.8, intron 2 of 3) protein_coding-intron (ENSMUSG00000021366.8, intron 2 of 8) 53951 ENSMUSG00000100071.1 ENSMUSG00000100071 ENSMUST00000186134 Gm28707 lincRNA Interval_16113 chr10 60805041 60806197 + 0 NA intron (ENSMUSG00000020099.8, intron 1 of 15) protein_coding-intron (ENSMUSG00000020099.8, intron 1 of 16) 8704 ENSMUSG00000112592.1 ENSMUSG00000112592 ENSMUST00000218180 Gm19972 TEC Interval_168175 chr9 77758979 77760038 + 0 NA intron (ENSMUSG00000032350.9, intron 1 of 15) protein_coding-intron (ENSMUSG00000032350.9, intron 1 of 15) -6634 ENSMUSG00000032350.9 ENSMUSG00000032350 ENSMUST00000216848 Gclc protein_coding Interval_102705 chr3 30448977 30449362 + 0 NA intron (ENSMUSG00000027684.16, intron 2 of 8) protein_coding-intron (ENSMUSG00000027684.16, intron 1 of 11) -39257 ENSMUSG00000104079.1 ENSMUSG00000104079 ENSMUST00000192224 Gm37024 TEC Interval_25421 chr11 48064076 48064679 + 0 NA Intergenic Intergenic -151832 ENSMUSG00000065804.1 ENSMUSG00000065804 ENSMUST00000083870 Gm23039 snRNA Interval_81687 chr18 63462556 63463110 + 0 NA Intergenic Intergenic -45336 ENSMUSG00000089156.1 ENSMUSG00000089156 ENSMUST00000158531 Gm23581 snRNA Interval_173573 chrX 99593206 99594312 + 0 NA Intergenic Intergenic 94015 ENSMUSG00000082505.1 ENSMUSG00000082505 ENSMUST00000117174 Gm14816 processed_pseudogene Interval_30104 chr11 89208875 89210103 + 0 NA Intergenic Intergenic -72723 ENSMUSG00000089485.1 ENSMUSG00000089485 ENSMUST00000158860 Gm24734 misc_RNA Interval_141817 chr6 134687987 134688414 + 0 NA intron (ENSMUSG00000042992.15, intron 3 of 3) protein_coding-intron (ENSMUSG00000042992.15, intron 3 of 3) -1659 ENSMUSG00000108166.1 ENSMUSG00000108166 ENSMUST00000203231 Gm44017 sense_intronic Interval_77037 chr17 85873834 85874779 + 0 NA intron (ENSMUSG00000117501.1, intron 2 of 2) lincRNA-intron (ENSMUSG00000117501.1, intron 2 of 2) -50262 ENSMUSG00000100345.1 ENSMUSG00000100345 ENSMUST00000186162 Gm29418 lincRNA Interval_161649 chr8 121792689 121793146 + 0 NA intron (ENSMUSG00000025318.13, intron 5 of 5) protein_coding-intron (ENSMUSG00000092329.1, intron 1 of 15) -13498 ENSMUSG00000092418.1 ENSMUSG00000092418 ENSMUST00000173993 Gm20406 antisense Interval_104314 chr3 63270365 63270597 + 0 NA intron (ENSMUSG00000027820.12, intron 1 of 5) protein_coding-intron (ENSMUSG00000027820.12, intron 1 of 5) -24785 ENSMUSG00000027820.12 ENSMUSG00000027820 ENSMUST00000193805 Mme protein_coding Interval_131180 chr5 135636015 135636650 + 0 NA promoter-TSS (ENSMUSG00000039917.10) protein_coding-promoter-TSS (ENSMUSG00000039917.10) 1164 ENSMUSG00000082001.3 ENSMUSG00000082001 ENSMUST00000119632 Gm15607 processed_pseudogene Interval_34470 chr12 4495351 4496080 + 0 NA Intergenic Intergenic -13602 ENSMUSG00000111938.1 ENSMUSG00000111938 ENSMUST00000218374 2900045O20Rik lincRNA Interval_122270 chr5 20843334 20843548 + 0 NA intron (ENSMUSG00000039987.15, intron 2 of 5) protein_coding-intron (ENSMUSG00000039987.15, intron 2 of 17) 37351 ENSMUSG00000082716.1 ENSMUSG00000082716 ENSMUST00000118086 Rpl31-ps5 processed_pseudogene Interval_57086 chr15 5951907 5953461 + 0 NA TTS (ENSMUSG00000115342.1) processed_pseudogene-TTS (ENSMUSG00000115342.1) 1240 ENSMUSG00000115342.1 ENSMUSG00000115342 ENSMUST00000226154 Gm49095 processed_pseudogene Interval_51060 chr14 21865454 21865871 + 0 NA Intergenic Intergenic -16975 ENSMUSG00000021773.11 ENSMUSG00000021773 ENSMUST00000177527 Comtd1 protein_coding Interval_105693 chr3 88602371 88604185 + 0 NA Intergenic Intergenic -12865 ENSMUSG00000028059.16 ENSMUSG00000028059 ENSMUST00000176272 Arhgef2 protein_coding Interval_74259 chr17 47767066 47767311 + 0 NA intron (ENSMUSG00000023990.18, intron 1 of 2) protein_coding-intron (ENSMUSG00000023990.18, intron 1 of 8) -20722 ENSMUSG00000023990.18 ENSMUSG00000023990 ENSMUST00000140715 Tfeb protein_coding Interval_13285 chr10 14130982 14131369 + 0 NA exon (ENSMUSG00000015501.10, exon 4 of 9) protein_coding-exon (ENSMUSG00000015501.10, exon 4 of 9) 23271 ENSMUSG00000101014.1 ENSMUSG00000101014 ENSMUST00000189331 Gm28289 antisense Interval_97166 chr2 131941513 131941803 + 0 NA intron (ENSMUSG00000098754.7, intron 2 of 3) protein_coding-intron (ENSMUSG00000098754.7, intron 2 of 4) -9204 ENSMUSG00000027338.16 ENSMUSG00000027338 ENSMUST00000110169 Prnd protein_coding Interval_39795 chr12 98452991 98453498 + 0 NA intron (ENSMUSG00000033854.10, intron 4 of 6) protein_coding-intron (ENSMUSG00000033854.10, intron 4 of 6) -4910 ENSMUSG00000113927.1 ENSMUSG00000113927 ENSMUST00000222069 5330409N07Rik TEC Interval_48034 chr13 95430466 95431436 + 0 NA TTS (ENSMUSG00000021680.8) protein_coding-TTS (ENSMUSG00000021680.8) -9275 ENSMUSG00000114122.1 ENSMUSG00000114122 ENSMUST00000223434 Gm48712 processed_pseudogene Interval_5444 chr1 88813165 88813888 + 0 NA Intergenic Intergenic 58636 ENSMUSG00000097398.2 ENSMUSG00000097398 ENSMUST00000180596 Platr5 lincRNA Interval_114086 chr4 63329391 63329608 + 0 NA intron (ENSMUSG00000045672.15, intron 55 of 57) protein_coding-intron (ENSMUSG00000045672.15, intron 58 of 60) -15061 ENSMUSG00000039196.2 ENSMUSG00000039196 ENSMUST00000030044 Orm1 protein_coding Interval_121967 chr5 12688731 12689098 + 0 NA Intergenic Intergenic -18186 ENSMUSG00000105237.1 ENSMUSG00000105237 ENSMUST00000197223 Gm42580 processed_pseudogene Interval_121058 chr4 152512396 152512713 + 0 NA intron (ENSMUSG00000039577.17, intron 8 of 28) protein_coding-intron (ENSMUSG00000039577.17, intron 8 of 28) 34376 ENSMUSG00000039577.17 ENSMUSG00000039577 ENSMUST00000123635 Nphp4 protein_coding Interval_173680 chrX 101864613 101865542 + 0 NA intron (ENSMUSG00000079481.11, intron 1 of 7) protein_coding-intron (ENSMUSG00000079481.11, intron 1 of 7) 40562 ENSMUSG00000082284.1 ENSMUSG00000082284 ENSMUST00000119546 H3f3a-ps1 processed_pseudogene Interval_56010 chr14 104171118 104171648 + 0 NA Intergenic Intergenic -144241 ENSMUSG00000115727.1 ENSMUSG00000115727 ENSMUST00000227414 4930432J09Rik lincRNA Interval_148054 chr7 78902287 78902504 + 0 NA promoter-TSS (ENSMUSG00000030609.18) protein_coding-promoter-TSS (ENSMUSG00000030609.18) 34 ENSMUSG00000030609.18 ENSMUSG00000030609 ENSMUST00000205861 Aen protein_coding Interval_173438 chrX 93667554 93667772 + 0 NA intron (ENSMUSG00000035246.16, intron 1 of 7) protein_coding-intron (ENSMUSG00000035246.16, intron 1 of 7) 29049 ENSMUSG00000087255.2 ENSMUSG00000087255 ENSMUST00000121255 Gm6985 processed_pseudogene Interval_107509 chr3 108193924 108194134 + 0 NA Intergenic Intergenic 5928 ENSMUSG00000050947.9 ENSMUSG00000050947 ENSMUST00000155782 Amigo1 protein_coding Interval_151593 chr7 124659821 124661371 + 0 NA intron (ENSMUSG00000086254.1, intron 1 of 3) lincRNA-intron (ENSMUSG00000086254.1, intron 1 of 3) 48339 ENSMUSG00000086254.1 ENSMUSG00000086254 ENSMUST00000130240 3100003L05Rik lincRNA Interval_24181 chr11 31034798 31036623 + 0 NA intron (ENSMUSG00000020305.13, intron 3 of 9) protein_coding-intron (ENSMUSG00000020305.13, intron 3 of 9) -31812 ENSMUSG00000082213.1 ENSMUSG00000082213 ENSMUST00000118251 Gm12102 processed_pseudogene Interval_33182 chr11 115052153 115053565 + 0 NA exon (ENSMUSG00000048498.7, exon 4 of 4) protein_coding-exon (ENSMUSG00000048498.7, exon 4 of 4) -4450 ENSMUSG00000069607.4 ENSMUSG00000069607 ENSMUST00000092459 Cd300ld3 protein_coding Interval_21974 chr11 5498643 5499601 + 0 NA intron (ENSMUSG00000085189.1, intron 1 of 2) antisense-intron (ENSMUSG00000085189.1, intron 1 of 2) 282 ENSMUSG00000085189.1 ENSMUSG00000085189 ENSMUST00000149826 Gm11963 antisense Interval_78742 chr18 20053228 20053442 + 0 NA intron (ENSMUSG00000024331.11, intron 1 of 17) protein_coding-intron (ENSMUSG00000024331.11, intron 1 of 16) -15196 ENSMUSG00000024331.11 ENSMUSG00000024331 ENSMUST00000128464 Dsc2 protein_coding Interval_159482 chr8 94994138 94994451 + 0 NA promoter-TSS (ENSMUSG00000031785.16) protein_coding-promoter-TSS (ENSMUSG00000031785.16) -184 ENSMUSG00000031785.16 ENSMUSG00000031785 ENSMUST00000211911 Adgrg1 protein_coding Interval_174192 chrX 139317287 139318547 + 0 NA intron (ENSMUSG00000086807.8, intron 4 of 19) processed_transcript-intron (ENSMUSG00000086807.8, intron 4 of 19) -15766 ENSMUSG00000051257.3 ENSMUSG00000051257 ENSMUST00000054534 Trap1a protein_coding Interval_44584 chr13 46476546 46476768 + 0 NA intron (ENSMUSG00000114752.1, intron 3 of 4) bidirectional_promoter_lncRNA-intron (ENSMUSG00000114752.1, intron 4 of 4) 25327 ENSMUSG00000114752.1 ENSMUSG00000114752 ENSMUST00000226076 Gm35110 bidirectional_promoter_lncRNA Interval_37601 chr12 70213506 70214860 + 0 NA TTS (ENSMUSG00000021069.17) protein_coding-TTS (ENSMUSG00000021069.17) -6835 ENSMUSG00000021069.17 ENSMUSG00000021069 ENSMUST00000166609 Pygl protein_coding Interval_75437 chr17 66535331 66536130 + 0 NA intron (ENSMUSG00000117235.1, intron 2 of 2) lincRNA-intron (ENSMUSG00000117235.1, intron 2 of 2) 3627 ENSMUSG00000117235.1 ENSMUSG00000117235 ENSMUST00000233785 Gm49938 lincRNA Interval_158705 chr8 85446126 85447336 + 0 NA Intergenic Intergenic -13917 ENSMUSG00000036934.9 ENSMUSG00000036934 ENSMUST00000210556 4921524J17Rik protein_coding Interval_140751 chr6 121053690 121054687 + 0 NA intron (ENSMUSG00000051586.17, intron 1 of 14) protein_coding-intron (ENSMUSG00000051586.17, intron 1 of 17) -10408 ENSMUSG00000097011.2 ENSMUSG00000097011 ENSMUST00000203697 Gm4651 processed_transcript Interval_90740 chr2 32213728 32216707 + 0 NA promoter-TSS (ENSMUSG00000039262.16) protein_coding-promoter-TSS (ENSMUSG00000039262.16) 3019 ENSMUSG00000039262.16 ENSMUSG00000039262 ENSMUST00000141053 Prrc2b protein_coding Interval_15746 chr10 55793239 55793410 + 0 NA Intergenic Intergenic 308679 ENSMUSG00000112528.1 ENSMUSG00000112528 ENSMUST00000218919 Gm29794 processed_pseudogene Interval_68321 chr16 73054693 73055070 + 0 NA Intergenic Intergenic -17494 ENSMUSG00000116976.1 ENSMUSG00000116976 ENSMUST00000231486 4930500H12Rik processed_transcript Interval_139432 chr6 100132742 100133745 + 0 NA Intergenic Intergenic 10571 ENSMUSG00000107558.1 ENSMUSG00000107558 ENSMUST00000204605 2010109P13Rik TEC Interval_6984 chr1 121548640 121549914 + 0 NA Intergenic Intergenic 9938 ENSMUSG00000001674.11 ENSMUSG00000001674 ENSMUST00000131471 Ddx18 protein_coding Interval_118808 chr4 133827416 133828427 + 0 NA Intergenic Intergenic 11501 ENSMUSG00000084789.1 ENSMUSG00000084789 ENSMUST00000129875 Gm12974 lincRNA Interval_58505 chr15 35292493 35294180 + 0 NA Intergenic Intergenic -2775 ENSMUSG00000022330.5 ENSMUSG00000022330 ENSMUST00000228152 Osr2 protein_coding Interval_51225 chr14 25307031 25307422 + 0 NA intron (ENSMUSG00000087535.2, intron 2 of 3) antisense-intron (ENSMUSG00000087535.2, intron 2 of 3) 72383 ENSMUSG00000097601.2 ENSMUSG00000097601 ENSMUST00000181582 Gm26660 lincRNA Interval_166278 chr9 57987860 57988243 + 0 NA Intergenic Intergenic -9990 ENSMUSG00000097604.1 ENSMUSG00000097604 ENSMUST00000181289 Gm17322 lincRNA Interval_12939 chr10 8358356 8359945 + 0 NA intron (ENSMUSG00000047712.8, intron 2 of 7) protein_coding-intron (ENSMUSG00000047712.8, intron 2 of 7) -56908 ENSMUSG00000047712.8 ENSMUSG00000047712 ENSMUST00000061601 Ust protein_coding Interval_16384 chr10 62662089 62662593 + 0 NA intron (ENSMUSG00000036923.12, intron 3 of 3) protein_coding-intron (ENSMUSG00000036923.12, intron 3 of 3) -7462 ENSMUSG00000112901.1 ENSMUSG00000112901 ENSMUST00000218980 Gm18514 processed_pseudogene Interval_135778 chr6 47279362 47279629 + 0 NA intron (ENSMUSG00000039419.17, intron 2 of 3) protein_coding-intron (ENSMUSG00000039419.17, intron 2 of 3) 153594 ENSMUSG00000107853.1 ENSMUSG00000107853 ENSMUST00000203098 Gm18584 processed_pseudogene Interval_112481 chr4 41519849 41521156 + 0 NA promoter-TSS (ENSMUSG00000087623.1) processed_transcript-promoter-TSS (ENSMUSG00000087623.1) -192 ENSMUSG00000087623.1 ENSMUSG00000087623 ENSMUST00000122839 Gm12404 processed_transcript Interval_148239 chr7 80044638 80044865 + 0 NA intron (ENSMUSG00000048897.15, intron 1 of 1) protein_coding-intron (ENSMUSG00000048897.15, intron 1 of 4) 8046 ENSMUSG00000108365.1 ENSMUSG00000108365 ENSMUST00000206449 Gm44951 TEC Interval_139371 chr6 99555614 99556542 + 0 NA intron (ENSMUSG00000030068.4, intron 1 of 1) protein_coding-intron (ENSMUSG00000030068.4, intron 3 of 5) -19813 ENSMUSG00000084547.1 ENSMUSG00000084547 ENSMUST00000122598 Gm24936 misc_RNA Interval_79416 chr18 31754830 31755501 + 0 NA Intergenic Intergenic -4661 ENSMUSG00000041915.9 ENSMUSG00000041915 ENSMUST00000234191 Ammecr1l protein_coding Interval_132776 chr5 147791043 147791519 + 0 NA Intergenic Intergenic -30964 ENSMUSG00000107065.1 ENSMUSG00000107065 ENSMUST00000202661 Gm43155 processed_pseudogene Interval_72985 chr17 33972422 33973045 + 0 NA Intergenic Intergenic 6094 ENSMUSG00000067203.8 ENSMUSG00000067203 ENSMUST00000174250 H2-K2 transcribed_unprocessed_pseudogene Interval_173597 chrX 100617506 100618594 + 0 NA intron (ENSMUSG00000060890.11, intron 15 of 15) protein_coding-intron (ENSMUSG00000060890.11, intron 16 of 16) 6211 ENSMUSG00000060890.11 ENSMUSG00000060890 ENSMUST00000166688 Arr3 protein_coding Interval_73300 chr17 36047514 36047993 + 0 NA intron (ENSMUSG00000073407.1, intron 1 of 2) protein_coding-intron (ENSMUSG00000073407.1, intron 1 of 2) 4792 ENSMUSG00000073407.1 ENSMUSG00000073407 ENSMUST00000097331 Gm6034 protein_coding Interval_29155 chr11 80779388 80780424 + 0 NA promoter-TSS (ENSMUSG00000035441.14) protein_coding-promoter-TSS (ENSMUSG00000035441.14) 97 ENSMUSG00000035441.14 ENSMUSG00000035441 ENSMUST00000125944 Myo1d protein_coding Interval_101778 chr3 9524546 9524793 + 0 NA intron (ENSMUSG00000040209.12, intron 1 of 9) protein_coding-intron (ENSMUSG00000040209.12, intron 2 of 8) 28501 ENSMUSG00000103485.1 ENSMUSG00000103485 ENSMUST00000192900 Gm38001 TEC Interval_54181 chr14 66027763 66028776 + 0 NA intron (ENSMUSG00000022039.6, intron 19 of 20) protein_coding-intron (ENSMUSG00000022039.6, intron 19 of 20) -16811 ENSMUSG00000068165.3 ENSMUSG00000068165 ENSMUST00000089275 Gm10233 processed_pseudogene Interval_69705 chr16 95687759 95688244 + 0 NA Intergenic Intergenic -14454 ENSMUSG00000022895.16 ENSMUSG00000022895 ENSMUST00000233578 Ets2 protein_coding Interval_12752 chr10 4783609 4783883 + 0 NA intron (ENSMUSG00000019768.16, intron 4 of 7) protein_coding-intron (ENSMUSG00000019768.16, intron 3 of 8) 172153 ENSMUSG00000019768.16 ENSMUSG00000019768 ENSMUST00000137012 Esr1 protein_coding Interval_24935 chr11 41679861 41680065 + 0 NA Intergenic Intergenic -30379 ENSMUSG00000087306.7 ENSMUSG00000087306 ENSMUST00000139508 A230004M16Rik processed_transcript Interval_113433 chr4 54969713 54970212 + 0 NA intron (ENSMUSG00000060206.11, intron 1 of 12) protein_coding-intron (ENSMUSG00000060206.11, intron 1 of 12) 24914 ENSMUSG00000060206.11 ENSMUSG00000060206 ENSMUST00000079605 Zfp462 protein_coding Interval_145382 chr7 34348740 34348925 + 0 NA intron (ENSMUSG00000066568.12, intron 5 of 6) protein_coding-intron (ENSMUSG00000066568.12, intron 9 of 10) 4663 ENSMUSG00000066568.12 ENSMUSG00000066568 ENSMUST00000206715 Lsm14a protein_coding Interval_81008 chr18 52694043 52694314 + 0 NA exon (ENSMUSG00000053624.4, exon 1 of 1) protein_coding-exon (ENSMUSG00000053624.4, exon 1 of 1) 488 ENSMUSG00000053624.4 ENSMUSG00000053624 ENSMUST00000066193 Gykl1 protein_coding Interval_166817 chr9 62958126 62958664 + 0 NA intron (ENSMUSG00000032405.10, intron 1 of 4) protein_coding-intron (ENSMUSG00000032405.10, intron 1 of 13) 29529 ENSMUSG00000032405.10 ENSMUSG00000032405 ENSMUST00000215455 Pias1 protein_coding Interval_124455 chr5 48240757 48241265 + 0 NA intron (ENSMUSG00000031558.15, intron 22 of 38) protein_coding-intron (ENSMUSG00000031558.15, intron 20 of 35) -4191 ENSMUSG00000031558.15 ENSMUSG00000031558 ENSMUST00000173686 Slit2 protein_coding Interval_48674 chr13 101055688 101055884 + 0 NA Intergenic Intergenic -16540 ENSMUSG00000096722.2 ENSMUSG00000096722 ENSMUST00000179479 Hmgb1-ps9 processed_pseudogene Interval_109024 chr3 135224259 135224620 + 0 NA intron (ENSMUSG00000045328.11, intron 11 of 45) protein_coding-intron (ENSMUSG00000045328.11, intron 11 of 45) 15452 ENSMUSG00000106079.1 ENSMUSG00000106079 ENSMUST00000199682 Gm43033 processed_pseudogene Interval_166238 chr9 57708125 57709220 + 0 NA exon (ENSMUSG00000038957.13, exon 1 of 7) protein_coding-exon (ENSMUSG00000038957.13, exon 1 of 7) 105 ENSMUSG00000038957.13 ENSMUSG00000038957 ENSMUST00000142807 Edc3 protein_coding Interval_173044 chrX 68101730 68101964 + 0 NA Intergenic Intergenic -91668 ENSMUSG00000106233.1 ENSMUSG00000106233 ENSMUST00000196089 Mir509 miRNA Interval_26056 chr11 53799832 53801267 + 0 NA intron (ENSMUSG00000081769.9, intron 3 of 4) protein_coding-intron (ENSMUSG00000081769.9, intron 3 of 3) -27354 ENSMUSG00000091191.2 ENSMUSG00000091191 ENSMUST00000170390 Gm17334 TEC Interval_52192 chr14 40071840 40072328 + 0 NA Intergenic Intergenic 62182 ENSMUSG00000089021.1 ENSMUSG00000089021 ENSMUST00000158396 Gm25012 snRNA Interval_148303 chr7 80381469 80381757 + 0 NA exon (ENSMUSG00000053158.10, exon 11 of 19) protein_coding-exon (ENSMUSG00000053158.10, exon 11 of 19) 6258 ENSMUSG00000053158.10 ENSMUSG00000053158 ENSMUST00000206271 Fes protein_coding Interval_147500 chr7 67777568 67777775 + 0 NA TTS (ENSMUSG00000080609.1) miRNA-TTS (ENSMUSG00000080609.1) 859 ENSMUSG00000080609.1 ENSMUSG00000080609 ENSMUST00000116959 Gm23844 miRNA Interval_91365 chr2 38305707 38306069 + 0 NA Intergenic Intergenic 20581 ENSMUSG00000087294.2 ENSMUSG00000087294 ENSMUST00000132692 Gm13556 antisense Interval_148256 chr7 80123246 80123549 + 0 NA Intergenic Intergenic -8093 ENSMUSG00000030541.16 ENSMUSG00000030541 ENSMUST00000134070 Idh2 protein_coding Interval_31108 chr11 98181610 98183144 + 0 NA intron (ENSMUSG00000018160.15, intron 3 of 9) protein_coding-intron (ENSMUSG00000018160.15, intron 3 of 16) -2989 ENSMUSG00000085897.2 ENSMUSG00000085897 ENSMUST00000121487 Gm11604 processed_pseudogene Interval_136170 chr6 51683333 51683567 + 0 NA Intergenic Intergenic 27631 ENSMUSG00000108145.1 ENSMUSG00000108145 ENSMUST00000203781 Gm38811 lincRNA Interval_125569 chr5 71699888 71701555 + 0 NA promoter-TSS (ENSMUSG00000105489.1) antisense-promoter-TSS (ENSMUSG00000105489.1) -897 ENSMUSG00000105489.1 ENSMUSG00000105489 ENSMUST00000199398 Gm38562 antisense Interval_141518 chr6 128837585 128840122 + 0 NA Intergenic Intergenic 4318 ENSMUSG00000107946.1 ENSMUSG00000107946 ENSMUST00000203263 Gm44066 lincRNA Interval_18150 chr10 83036233 83037468 + 0 NA intron (ENSMUSG00000034612.7, intron 1 of 2) protein_coding-intron (ENSMUSG00000034612.7, intron 1 of 2) -5155 ENSMUSG00000112084.1 ENSMUSG00000112084 ENSMUST00000218071 Gm10773 TEC Interval_170821 chr9 110982244 110982891 + 0 NA exon (ENSMUSG00000032495.8, exon 9 of 9) protein_coding-exon (ENSMUSG00000032495.8, exon 9 of 9) -3634 ENSMUSG00000102060.1 ENSMUSG00000102060 ENSMUST00000185439 1700061E17Rik antisense Interval_126370 chr5 87436236 87436929 + 0 NA Intergenic Intergenic -12379 ENSMUSG00000061906.5 ENSMUSG00000061906 ENSMUST00000072818 Ugt2b38 protein_coding Interval_64713 chr16 14399587 14401113 + 0 NA intron (ENSMUSG00000023088.17, intron 5 of 30) protein_coding-intron (ENSMUSG00000023088.17, intron 5 of 30) 17543 ENSMUSG00000089106.1 ENSMUSG00000089106 ENSMUST00000158481 Gm23116 snRNA Interval_138015 chr6 84148632 84148909 + 0 NA intron (ENSMUSG00000033788.15, intron 1 of 4) protein_coding-intron (ENSMUSG00000033788.15, intron 36 of 54) -41763 ENSMUSG00000087001.2 ENSMUSG00000087001 ENSMUST00000137673 Gm15475 antisense Interval_95071 chr2 103706353 103707201 + 0 NA intron (ENSMUSG00000032724.5, intron 7 of 16) protein_coding-intron (ENSMUSG00000032724.5, intron 7 of 16) -8258 ENSMUSG00000032724.5 ENSMUSG00000032724 ENSMUST00000131122 Abtb2 protein_coding Interval_93526 chr2 73798469 73801075 + 0 NA Intergenic Intergenic -9390 ENSMUSG00000081062.1 ENSMUSG00000081062 ENSMUST00000118445 Gm13640 processed_pseudogene Interval_133902 chr6 14654528 14654731 + 0 NA Intergenic Intergenic -83604 ENSMUSG00000107657.1 ENSMUSG00000107657 ENSMUST00000204864 Gm44446 processed_pseudogene Interval_79767 chr18 35020812 35023223 + 0 NA intron (ENSMUSG00000118380.1, intron 3 of 3) processed_transcript-intron (ENSMUSG00000118380.1, intron 4 of 5) 39047 ENSMUSG00000118380.1 ENSMUSG00000118380 ENSMUST00000238090 Gm36037 processed_transcript Interval_147787 chr7 73549936 73550191 + 0 NA intron (ENSMUSG00000101970.8, intron 2 of 3) processed_transcript-intron (ENSMUSG00000101970.8, intron 3 of 4) 8084 ENSMUSG00000101970.8 ENSMUSG00000101970 ENSMUST00000184655 1810026B05Rik processed_transcript Interval_40224 chr12 102630588 102630967 + 0 NA intron (ENSMUSG00000057963.9, intron 2 of 4) protein_coding-intron (ENSMUSG00000057963.9, intron 2 of 9) 10157 ENSMUSG00000057963.9 ENSMUSG00000057963 ENSMUST00000178697 Itpk1 protein_coding Interval_74938 chr17 57576387 57576839 + 0 NA Intergenic Intergenic -18648 ENSMUSG00000117223.1 ENSMUSG00000117223 ENSMUST00000233817 Gm49842 unprocessed_pseudogene Interval_1280 chr1 19096851 19097308 + 0 NA intron (ENSMUSG00000089787.2, intron 1 of 3) antisense-intron (ENSMUSG00000089787.2, intron 1 of 3) 7761 ENSMUSG00000089787.2 ENSMUSG00000089787 ENSMUST00000159108 Gm15825 antisense Interval_24447 chr11 33318056 33318269 + 0 NA intron (ENSMUSG00000040594.19, intron 7 of 9) protein_coding-intron (ENSMUSG00000040594.19, intron 18 of 27) -41425 ENSMUSG00000098456.1 ENSMUSG00000098456 ENSMUST00000183831 Gm12117 protein_coding Interval_52769 chr14 49628392 49628912 + 0 NA Intergenic Intergenic -55334 ENSMUSG00000089187.1 ENSMUSG00000089187 ENSMUST00000158562 Gm22949 miRNA Interval_114834 chr4 86050339 86050551 + 0 NA intron (ENSMUSG00000066113.16, intron 2 of 3) protein_coding-intron (ENSMUSG00000066113.16, intron 2 of 3) -6951 ENSMUSG00000064687.1 ENSMUSG00000064687 ENSMUST00000082753 Gm25811 snRNA Interval_30477 chr11 94617027 94618113 + 0 NA Intergenic Intergenic 10168 ENSMUSG00000082945.1 ENSMUSG00000082945 ENSMUST00000117457 Gm11540 unprocessed_pseudogene Interval_111324 chr4 18802837 18803380 + 0 NA intron (ENSMUSG00000087402.1, intron 4 of 10) processed_transcript-intron (ENSMUSG00000087402.1, intron 4 of 10) 42571 ENSMUSG00000050550.7 ENSMUSG00000050550 ENSMUST00000121594 Gm11868 processed_pseudogene Interval_144603 chr7 26836446 26837242 + 0 NA intron (ENSMUSG00000005547.14, intron 2 of 5) protein_coding-intron (ENSMUSG00000005547.14, intron 3 of 8) -4100 ENSMUSG00000005547.14 ENSMUSG00000005547 ENSMUST00000170631 Cyp2a5 protein_coding Interval_50241 chr14 11118839 11119222 + 0 NA intron (ENSMUSG00000060579.13, intron 1 of 7) protein_coding-intron (ENSMUSG00000060579.13, intron 2 of 9) -43160 ENSMUSG00000089785.2 ENSMUSG00000089785 ENSMUST00000162199 Slc25a5-ps transcribed_processed_pseudogene Interval_122980 chr5 28123155 28125474 + 0 NA Intergenic Intergenic -41380 ENSMUSG00000039095.8 ENSMUSG00000039095 ENSMUST00000036177 En2 protein_coding Interval_60999 chr15 78610655 78611869 + 0 NA promoter-TSS (ENSMUSG00000018008.8) protein_coding-promoter-TSS (ENSMUSG00000018008.8) 14209 ENSMUSG00000018008.8 ENSMUSG00000018008 ENSMUST00000230583 Cyth4 protein_coding Interval_117640 chr4 125203239 125204135 + 0 NA Intergenic Intergenic -24910 ENSMUSG00000087010.1 ENSMUSG00000087010 ENSMUST00000130055 1700041M05Rik lincRNA Interval_143865 chr7 16842465 16843754 + 0 NA promoter-TSS (ENSMUSG00000041187.16) protein_coding-promoter-TSS (ENSMUSG00000041187.16) 12010 ENSMUSG00000030374.15 ENSMUSG00000030374 ENSMUST00000183680 Strn4 protein_coding Interval_54632 chr14 72506176 72507098 + 0 NA Intergenic Intergenic -14799 ENSMUSG00000109446.1 ENSMUSG00000109446 ENSMUST00000208955 Gm9195 protein_coding Interval_16372 chr10 62542600 62544051 + 0 NA intron (ENSMUSG00000036955.16, intron 4 of 4) protein_coding-intron (ENSMUSG00000036955.16, intron 7 of 7) -15900 ENSMUSG00000020077.14 ENSMUSG00000020077 ENSMUST00000162956 Srgn protein_coding Interval_107775 chr3 113887356 113887577 + 0 NA Intergenic Intergenic 32730 ENSMUSG00000106084.1 ENSMUSG00000106084 ENSMUST00000197877 Gm18163 processed_pseudogene Interval_4364 chr1 73116492 73116738 + 0 NA Intergenic Intergenic 92808 ENSMUSG00000102266.1 ENSMUSG00000102266 ENSMUST00000194107 Gm38106 TEC Interval_174677 chrX 162844355 162845385 + 0 NA promoter-TSS (ENSMUSG00000084022.1) processed_pseudogene-promoter-TSS (ENSMUSG00000084022.1) 32 ENSMUSG00000084022.1 ENSMUSG00000084022 ENSMUST00000121443 Gm16459 processed_pseudogene Interval_57635 chr15 12993984 12994196 + 0 NA Intergenic Intergenic 13261 ENSMUSG00000089564.1 ENSMUSG00000089564 ENSMUST00000158939 Gm24664 rRNA Interval_142443 chr6 142356535 142356742 + 0 NA TTS (ENSMUSG00000030243.16) protein_coding-TTS (ENSMUSG00000030243.16) 10971 ENSMUSG00000041671.13 ENSMUSG00000041671 ENSMUST00000153912 Pyroxd1 protein_coding Interval_122409 chr5 22300792 22301152 + 0 NA intron (ENSMUSG00000042453.14, intron 1 of 7) protein_coding-intron (ENSMUSG00000042453.14, intron 1 of 63) 8185 ENSMUSG00000089793.1 ENSMUSG00000089793 ENSMUST00000159075 Gm16112 processed_pseudogene Interval_24922 chr11 41397162 41397361 + 0 NA Intergenic Intergenic 19183 ENSMUSG00000081112.1 ENSMUSG00000081112 ENSMUST00000121214 Gm12140 processed_pseudogene Interval_172305 chrX 12767882 12769046 + 0 NA intron (ENSMUSG00000085891.7, intron 1 of 2) processed_transcript-intron (ENSMUSG00000085891.7, intron 1 of 4) 5920 ENSMUSG00000085891.7 ENSMUSG00000085891 ENSMUST00000151112 Gm14634 processed_transcript Interval_123763 chr5 35335707 35336074 + 0 NA Intergenic Intergenic -25663 ENSMUSG00000106762.3 ENSMUSG00000106762 ENSMUST00000201921 4930478P22Rik lincRNA Interval_164087 chr9 31400262 31401351 + 0 NA intron (ENSMUSG00000042185.14, intron 11 of 25) protein_coding-intron (ENSMUSG00000042185.14, intron 11 of 25) 4655 ENSMUSG00000042185.14 ENSMUSG00000042185 ENSMUST00000143558 Nfrkb protein_coding Interval_92578 chr2 60836766 60837209 + 0 NA intron (ENSMUSG00000026970.16, intron 2 of 14) protein_coding-intron (ENSMUSG00000026970.16, intron 2 of 13) 44451 ENSMUSG00000026970.16 ENSMUSG00000026970 ENSMUST00000128866 Rbms1 protein_coding Interval_134775 chr6 31390317 31391006 + 0 NA intron (ENSMUSG00000086212.7, intron 2 of 2) lincRNA-intron (ENSMUSG00000086212.7, intron 2 of 2) 8092 ENSMUSG00000086212.7 ENSMUSG00000086212 ENSMUST00000139185 Mkln1os lincRNA Interval_29006 chr11 79868151 79868618 + 0 NA intron (ENSMUSG00000086474.2, intron 2 of 4) lincRNA-intron (ENSMUSG00000086474.2, intron 2 of 4) 25331 ENSMUSG00000065283.1 ENSMUSG00000065283 ENSMUST00000083349 Gm24454 snoRNA Interval_120811 chr4 150774296 150774501 + 0 NA Intergenic Intergenic -51335 ENSMUSG00000085097.1 ENSMUSG00000085097 ENSMUST00000133196 Gm13049 lincRNA Interval_137681 chr6 79034087 79035020 + 0 NA exon (ENSMUSG00000108072.1, exon 3 of 3) lincRNA-exon (ENSMUSG00000108072.1, exon 3 of 3) 2509 ENSMUSG00000108072.1 ENSMUSG00000108072 ENSMUST00000204808 Gm20362 lincRNA Interval_41048 chr12 110808405 110809439 + 0 NA exon (ENSMUSG00000056458.16, exon 6 of 6) protein_coding-exon (ENSMUSG00000056458.16, exon 6 of 6) 32005 ENSMUSG00000056458.16 ENSMUSG00000056458 ENSMUST00000177224 Mok protein_coding Interval_135475 chr6 39532486 39533847 + 0 NA intron (ENSMUSG00000085058.2, intron 3 of 3) protein_coding-intron (ENSMUSG00000038456.9, intron 1 of 18) 5640 ENSMUSG00000085058.2 ENSMUSG00000085058 ENSMUST00000200951 8030453O22Rik processed_transcript Interval_32494 chr11 107894637 107894838 + 0 NA intron (ENSMUSG00000040373.12, intron 1 of 5) protein_coding-intron (ENSMUSG00000040373.12, intron 1 of 5) 16625 ENSMUSG00000040373.12 ENSMUSG00000040373 ENSMUST00000039071 Cacng5 protein_coding Interval_51662 chr14 31205028 31207302 + 0 NA intron (ENSMUSG00000021910.15, intron 2 of 3) protein_coding-intron (ENSMUSG00000021910.15, intron 1 of 20) -2165 ENSMUSG00000091898.8 ENSMUSG00000091898 ENSMUST00000161399 Tnnc1 protein_coding Interval_45795 chr13 58136837 58137539 + 0 NA Intergenic Intergenic -8632 ENSMUSG00000007836.6 ENSMUSG00000007836 ENSMUST00000007980 Hnrnpa0 protein_coding Interval_170698 chr9 110162894 110163063 + 0 NA intron (ENSMUSG00000032481.17, intron 7 of 24) protein_coding-intron (ENSMUSG00000032481.17, intron 7 of 27) -41162 ENSMUSG00000105187.1 ENSMUSG00000105187 ENSMUST00000196828 Gm23377 snoRNA Interval_119764 chr4 139796188 139798430 + 0 NA intron (ENSMUSG00000028736.13, intron 4 of 8) protein_coding-intron (ENSMUSG00000028736.13, intron 4 of 8) 35698 ENSMUSG00000028736.13 ENSMUSG00000028736 ENSMUST00000174681 Pax7 protein_coding Interval_165701 chr9 51146105 51146339 + 0 NA intron (ENSMUSG00000110266.1, intron 20 of 30) protein_coding-intron (ENSMUSG00000110266.1, intron 20 of 30) 19295 ENSMUSG00000110266.1 ENSMUSG00000110266 ENSMUST00000210433 Gm32742 protein_coding Interval_42878 chr13 20963024 20963352 + 0 NA intron (ENSMUSG00000021322.8, intron 12 of 20) protein_coding-intron (ENSMUSG00000021322.8, intron 12 of 20) 111759 ENSMUSG00000042869.2 ENSMUSG00000042869 ENSMUST00000058168 Olfr1370 protein_coding Interval_159687 chr8 97281216 97281591 + 0 NA Intergenic Intergenic 25562 ENSMUSG00000077125.1 ENSMUSG00000077125 ENSMUST00000103937 Gm26399 miRNA Interval_125106 chr5 64508436 64508655 + 0 NA Intergenic Intergenic 31537 ENSMUSG00000105352.4 ENSMUSG00000105352 ENSMUST00000196829 C030018K13Rik lincRNA Interval_50401 chr14 12514328 12514561 + 0 NA intron (ENSMUSG00000054423.14, intron 11 of 30) protein_coding-intron (ENSMUSG00000054423.14, intron 11 of 28) -86803 ENSMUSG00000084541.1 ENSMUSG00000084541 ENSMUST00000122592 n-R5s45 rRNA Interval_155140 chr8 26986152 26986863 + 0 NA Intergenic Intergenic -6506 ENSMUSG00000109954.1 ENSMUSG00000109954 ENSMUST00000210723 Gm45371 antisense Interval_30948 chr11 97354423 97355320 + 0 NA Intergenic Intergenic -2794 ENSMUSG00000070337.4 ENSMUSG00000070337 ENSMUST00000162544 Gpr179 protein_coding Interval_22958 chr11 17974847 17976466 + 0 NA promoter-TSS (ENSMUSG00000084413.1) processed_pseudogene-promoter-TSS (ENSMUSG00000084413.1) -866 ENSMUSG00000084413.1 ENSMUSG00000084413 ENSMUST00000122453 Gm12017 processed_pseudogene Interval_37461 chr12 69143158 69143761 + 0 NA exon (ENSMUSG00000113158.1, exon 2 of 3) lincRNA-exon (ENSMUSG00000113158.1, exon 2 of 3) -1393 ENSMUSG00000083191.1 ENSMUSG00000083191 ENSMUST00000119887 Gm15571 processed_pseudogene Interval_39684 chr12 92208671 92208863 + 0 NA Intergenic Intergenic -10610 ENSMUSG00000114085.1 ENSMUSG00000114085 ENSMUST00000220602 Gm6841 processed_pseudogene Interval_122308 chr5 21139658 21140230 + 0 NA Intergenic Intergenic 8868 ENSMUSG00000106104.1 ENSMUSG00000106104 ENSMUST00000197733 Gm42660 TEC Interval_10857 chr1 176137968 176138650 + 0 NA intron (ENSMUSG00000055214.15, intron 2 of 4) protein_coding-intron (ENSMUSG00000055214.15, intron 2 of 9) -40892 ENSMUSG00000103277.1 ENSMUSG00000103277 ENSMUST00000192153 Gm37916 TEC Interval_117622 chr4 125105398 125107070 + 0 NA intron (ENSMUSG00000028863.13, intron 5 of 5) protein_coding-intron (ENSMUSG00000028863.13, intron 5 of 5) 16286 ENSMUSG00000042677.7 ENSMUSG00000042677 ENSMUST00000131685 Zc3h12a protein_coding Interval_79853 chr18 35585335 35585759 + 0 NA intron (ENSMUSG00000037236.16, intron 12 of 14) protein_coding-intron (ENSMUSG00000037236.16, intron 12 of 14) 10640 ENSMUSG00000102496.1 ENSMUSG00000102496 ENSMUST00000193225 Gm36989 TEC Interval_83320 chr18 84174128 84175650 + 0 NA intron (ENSMUSG00000048410.17, intron 2 of 2) protein_coding-intron (ENSMUSG00000048410.17, intron 2 of 2) -28035 ENSMUSG00000118385.1 ENSMUSG00000118385 ENSMUST00000238064 Gm50311 antisense Interval_81014 chr18 52935122 52935860 + 0 NA Intergenic Intergenic -17058 ENSMUSG00000118195.1 ENSMUSG00000118195 ENSMUST00000235787 Gm8572 processed_pseudogene Interval_12211 chr1 190858152 190858552 + 0 NA intron (ENSMUSG00000089872.10, intron 3 of 8) protein_coding-intron (ENSMUSG00000089872.10, intron 6 of 14) 41365 ENSMUSG00000089872.10 ENSMUSG00000089872 ENSMUST00000159066 Rps6kc1 protein_coding Interval_141422 chr6 128157827 128158925 + 0 NA Intergenic Intergenic 8546 ENSMUSG00000108220.1 ENSMUSG00000108220 ENSMUST00000204623 Gm44056 TEC Interval_80611 chr18 44590972 44591605 + 0 NA intron (ENSMUSG00000071856.10, intron 3 of 18) protein_coding-intron (ENSMUSG00000071856.10, intron 3 of 18) -70815 ENSMUSG00000097610.2 ENSMUSG00000097610 ENSMUST00000202771 A930012L18Rik antisense Interval_160386 chr8 108880135 108880534 + 0 NA intron (ENSMUSG00000038872.10, intron 10 of 15) protein_coding-intron (ENSMUSG00000038872.10, intron 4 of 9) 12772 ENSMUSG00000102989.1 ENSMUSG00000102989 ENSMUST00000195769 Gm38318 TEC Interval_64651 chr16 13894961 13895330 + 0 NA intron (ENSMUSG00000022680.14, intron 1 of 22) protein_coding-intron (ENSMUSG00000022680.14, intron 1 of 23) 7837 ENSMUSG00000022680.14 ENSMUSG00000022680 ENSMUST00000137715 Pdxdc1 protein_coding Interval_81180 chr18 55930163 55930407 + 0 NA Intergenic Intergenic -7868 ENSMUSG00000118141.1 ENSMUSG00000118141 ENSMUST00000235251 Gm4230 lincRNA Interval_32145 chr11 105574473 105574742 + 0 NA Intergenic Intergenic -23018 ENSMUSG00000080681.1 ENSMUSG00000080681 ENSMUST00000117031 Gm23990 miRNA Interval_71144 chr17 20049781 20049980 + 0 NA TTS (ENSMUSG00000117099.1) processed_pseudogene-TTS (ENSMUSG00000117099.1) 837 ENSMUSG00000117099.1 ENSMUSG00000117099 ENSMUST00000233551 Gm3547 processed_pseudogene Interval_168489 chr9 82358745 82359181 + 0 NA Intergenic Intergenic 80511 ENSMUSG00000089066.1 ENSMUSG00000089066 ENSMUST00000158441 Gm22836 snRNA Interval_64204 chr16 9121726 9122130 + 0 NA intron (ENSMUSG00000116469.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000116469.1, intron 1 of 2) -14158 ENSMUSG00000116348.1 ENSMUSG00000116348 ENSMUST00000231156 Gm18722 processed_pseudogene Interval_41900 chr13 4055054 4056163 + 0 NA TTS (ENSMUSG00000110055.1) unprocessed_pseudogene-TTS (ENSMUSG00000110055.1) 20363 ENSMUSG00000110055.1 ENSMUSG00000110055 ENSMUST00000210421 Gm18857 unprocessed_pseudogene Interval_20712 chr10 120427845 120429547 + 0 NA intron (ENSMUSG00000056758.14, intron 3 of 5) protein_coding-intron (ENSMUSG00000056758.14, intron 3 of 4) 19414 ENSMUSG00000076448.1 ENSMUSG00000076448 ENSMUST00000103249 Mir763 miRNA Interval_44109 chr13 40937294 40938295 + 0 NA intron (ENSMUSG00000021360.16, intron 1 of 1) protein_coding-intron (ENSMUSG00000021360.16, intron 1 of 2) 11837 ENSMUSG00000114723.1 ENSMUSG00000114723 ENSMUST00000223891 5530402G07Rik TEC Interval_98081 chr2 147738245 147738934 + 0 NA Intergenic Intergenic 27896 ENSMUSG00000051986.6 ENSMUSG00000051986 ENSMUST00000152542 A530006G24Rik lincRNA Interval_28044 chr11 72434856 72436169 + 0 NA promoter-TSS (ENSMUSG00000040471.17) protein_coding-promoter-TSS (ENSMUSG00000040471.17) -22 ENSMUSG00000040471.17 ENSMUSG00000040471 ENSMUST00000100903 Ggt6 protein_coding Interval_97527 chr2 138670497 138670714 + 0 NA Intergenic Intergenic 81213 ENSMUSG00000085911.1 ENSMUSG00000085911 ENSMUST00000155923 Gm14061 lincRNA Interval_71383 chr17 22875496 22877581 + 0 NA Intergenic Intergenic 3052 ENSMUSG00000117002.1 ENSMUSG00000117002 ENSMUST00000233007 Gm32892 processed_pseudogene Interval_97614 chr2 140659843 140660924 + 0 NA exon (ENSMUSG00000051379.12, exon 3 of 3) protein_coding-exon (ENSMUSG00000051379.12, exon 3 of 3) 11067 ENSMUSG00000051379.12 ENSMUSG00000051379 ENSMUST00000056760 Flrt3 protein_coding Interval_75598 chr17 69193262 69193496 + 0 NA intron (ENSMUSG00000024044.19, intron 1 of 19) protein_coding-intron (ENSMUSG00000024044.19, intron 1 of 21) 66379 ENSMUSG00000024044.19 ENSMUSG00000024044 ENSMUST00000223565 Epb41l3 protein_coding Interval_57233 chr15 8029431 8029647 + 0 NA intron (ENSMUSG00000039828.7, intron 8 of 17) protein_coding-intron (ENSMUSG00000039828.7, intron 8 of 17) 54211 ENSMUSG00000098281.1 ENSMUSG00000098281 ENSMUST00000184975 Gm27529 miRNA Interval_90275 chr2 29484310 29484731 + 0 NA intron (ENSMUSG00000026799.15, intron 4 of 4) protein_coding-intron (ENSMUSG00000026799.15, intron 4 of 7) -9226 ENSMUSG00000098539.1 ENSMUSG00000098539 ENSMUST00000184068 Mir133c miRNA Interval_44465 chr13 44996232 44996522 + 0 NA intron (ENSMUSG00000057531.14, intron 1 of 10) protein_coding-intron (ENSMUSG00000057531.14, intron 1 of 9) 5675 ENSMUSG00000057531.14 ENSMUSG00000057531 ENSMUST00000223524 Dtnbp1 protein_coding Interval_70722 chr17 13870320 13870799 + 0 NA intron (ENSMUSG00000068036.16, intron 1 of 3) protein_coding-intron (ENSMUSG00000068036.16, intron 22 of 30) 2943 ENSMUSG00000068036.16 ENSMUSG00000068036 ENSMUST00000124922 Afdn protein_coding Interval_99893 chr2 165653419 165654308 + 0 NA intron (ENSMUSG00000017897.18, intron 1 of 15) protein_coding-intron (ENSMUSG00000017897.18, intron 1 of 15) -1455 ENSMUSG00000017897.18 ENSMUSG00000017897 ENSMUST00000128280 Eya2 protein_coding Interval_17398 chr10 76357670 76357892 + 0 NA intron (ENSMUSG00000001151.10, intron 24 of 29) protein_coding-intron (ENSMUSG00000001151.10, intron 36 of 41) -12549 ENSMUSG00000020231.15 ENSMUSG00000020231 ENSMUST00000162766 Dip2a protein_coding Interval_84705 chr19 15752118 15752372 + 0 NA Intergenic Intergenic -50813 ENSMUSG00000117995.1 ENSMUSG00000117995 ENSMUST00000237461 Gm50348 lincRNA Interval_146123 chr7 44177115 44177338 + 0 NA Intergenic Intergenic -11010 ENSMUSG00000063713.7 ENSMUSG00000063713 ENSMUST00000073713 Klk1b24 protein_coding Interval_142023 chr6 136587182 136587585 + 0 NA exon (ENSMUSG00000030213.12, exon 9 of 15) protein_coding-exon (ENSMUSG00000030213.12, exon 9 of 15) -33249 ENSMUSG00000107760.1 ENSMUSG00000107760 ENSMUST00000204462 Gm44401 TEC Interval_99930 chr2 165976012 165977173 + 0 NA TTS (ENSMUSG00000084816.1) lincRNA-TTS (ENSMUSG00000084816.1) 9332 ENSMUSG00000084816.1 ENSMUSG00000084816 ENSMUST00000130022 Platr29 lincRNA Interval_169621 chr9 99494297 99494502 + 0 NA intron (ENSMUSG00000032468.11, intron 18 of 21) protein_coding-intron (ENSMUSG00000032468.11, intron 18 of 21) 42924 ENSMUSG00000046242.8 ENSMUSG00000046242 ENSMUST00000056103 Nme9 protein_coding Interval_128699 chr5 114796544 114796993 + 0 NA intron (ENSMUSG00000041870.16, intron 6 of 12) protein_coding-intron (ENSMUSG00000041870.16, intron 7 of 14) -2803 ENSMUSG00000041870.16 ENSMUSG00000041870 ENSMUST00000200704 Ankrd13a protein_coding Interval_118769 chr4 133613894 133614384 + 0 NA intron (ENSMUSG00000037553.14, intron 1 of 2) protein_coding-intron (ENSMUSG00000037553.14, intron 3 of 7) -11971 ENSMUSG00000047281.3 ENSMUSG00000047281 ENSMUST00000057311 Sfn protein_coding Interval_44595 chr13 46587468 46587823 + 0 NA intron (ENSMUSG00000021373.16, intron 4 of 9) protein_coding-intron (ENSMUSG00000021373.16, intron 4 of 12) 32135 ENSMUSG00000114596.1 ENSMUSG00000114596 ENSMUST00000225040 Gm47523 antisense Interval_112484 chr4 41528141 41528722 + 0 NA intron (ENSMUSG00000028439.14, intron 1 of 5) protein_coding-intron (ENSMUSG00000028439.14, intron 1 of 5) 7737 ENSMUSG00000087623.1 ENSMUSG00000087623 ENSMUST00000122839 Gm12404 processed_transcript Interval_8528 chr1 140655851 140656942 + 0 NA promoter-TSS (ENSMUSG00000102368.1) antisense-promoter-TSS (ENSMUSG00000102368.1) 8 ENSMUSG00000102368.1 ENSMUSG00000102368 ENSMUST00000193820 4930590L20Rik antisense Interval_144085 chr7 19363698 19364321 + 0 NA intron (ENSMUSG00000040734.14, intron 2 of 4) protein_coding-intron (ENSMUSG00000040734.14, intron 1 of 12) 4260 ENSMUSG00000040734.14 ENSMUSG00000040734 ENSMUST00000132655 Ppp1r13l protein_coding Interval_104604 chr3 68717084 68717710 + 0 NA Intergenic Intergenic -15740 ENSMUSG00000058360.5 ENSMUSG00000058360 ENSMUST00000080726 Gm10040 pseudogene Interval_151732 chr7 126312777 126314266 + 0 NA Intergenic Intergenic -13605 ENSMUSG00000066180.5 ENSMUSG00000066180 ENSMUST00000084598 Gm10155 processed_pseudogene Interval_59280 chr15 50716071 50716823 + 0 NA intron (ENSMUSG00000038679.16, intron 7 of 8) protein_coding-intron (ENSMUSG00000038679.16, intron 5 of 6) 172667 ENSMUSG00000084458.1 ENSMUSG00000084458 ENSMUST00000122509 Mir1907 miRNA Interval_114057 chr4 62789428 62790013 + 0 NA Intergenic Intergenic -22708 ENSMUSG00000077161.1 ENSMUSG00000077161 ENSMUST00000103973 Gm24117 snoRNA Interval_21680 chr11 3640449 3641283 + 0 NA exon (ENSMUSG00000056579.18, exon 2 of 2) protein_coding-exon (ENSMUSG00000056579.18, exon 2 of 2) 4086 ENSMUSG00000099081.1 ENSMUSG00000099081 ENSMUST00000185047 Gm27624 misc_RNA Interval_166783 chr9 62645058 62645332 + 0 NA Intergenic Intergenic -32665 ENSMUSG00000032243.8 ENSMUSG00000032243 ENSMUST00000159012 Itga11 protein_coding Interval_86008 chr19 34877859 34879628 + 0 NA promoter-TSS (ENSMUSG00000033610.16) protein_coding-promoter-TSS (ENSMUSG00000033610.16) -890 ENSMUSG00000033610.16 ENSMUSG00000033610 ENSMUST00000237577 Pank1 protein_coding Interval_105509 chr3 87149634 87151584 + 0 NA intron (ENSMUSG00000041734.15, intron 1 of 15) protein_coding-intron (ENSMUSG00000041734.15, intron 1 of 13) -7084 ENSMUSG00000102893.1 ENSMUSG00000102893 ENSMUST00000192571 Gm37855 lincRNA Interval_144218 chr7 20060050 20060802 + 0 NA intron (ENSMUSG00000060508.16, intron 7 of 7) protein_coding-intron (ENSMUSG00000060508.16, intron 9 of 9) -12351 ENSMUSG00000109103.1 ENSMUSG00000109103 ENSMUST00000207706 Gm18877 processed_pseudogene Interval_140852 chr6 122339245 122342877 + 0 NA promoter-TSS (ENSMUSG00000040669.14) protein_coding-promoter-TSS (ENSMUSG00000040669.14) -1449 ENSMUSG00000040669.14 ENSMUSG00000040669 ENSMUST00000161210 Phc1 protein_coding Interval_117268 chr4 121172210 121172647 + 0 NA intron (ENSMUSG00000049878.13, intron 2 of 5) protein_coding-intron (ENSMUSG00000049878.13, intron 4 of 7) 37771 ENSMUSG00000064547.1 ENSMUSG00000064547 ENSMUST00000082613 Gm22982 misc_RNA Interval_75099 chr17 63395845 63396711 + 0 NA intron (ENSMUSG00000023965.13, intron 1 of 6) protein_coding-intron (ENSMUSG00000023965.13, intron 4 of 8) 48607 ENSMUSG00000093051.1 ENSMUSG00000093051 ENSMUST00000175310 Gm24813 miRNA Interval_112853 chr4 45529586 45531605 + 0 NA promoter-TSS (ENSMUSG00000044813.15) protein_coding-promoter-TSS (ENSMUSG00000044813.15) -18148 ENSMUSG00000065322.1 ENSMUSG00000065322 ENSMUST00000083388 Gm22055 snRNA Interval_76321 chr17 79019935 79021566 + 0 NA promoter-TSS (ENSMUSG00000024070.15) protein_coding-promoter-TSS (ENSMUSG00000024070.15) 66 ENSMUSG00000024070.15 ENSMUSG00000024070 ENSMUST00000130070 Prkd3 protein_coding Interval_153608 chr8 3699189 3699444 + 0 NA Intergenic Intergenic -8489 ENSMUSG00000005540.10 ENSMUSG00000005540 ENSMUST00000207327 Fcer2a protein_coding Interval_131779 chr5 139818967 139819202 + 0 NA intron (ENSMUSG00000098140.1, intron 1 of 3) protein_coding-intron (ENSMUSG00000036687.13, intron 1 of 1) 833 ENSMUSG00000036687.13 ENSMUSG00000036687 ENSMUST00000147328 Tmem184a protein_coding Interval_54516 chr14 70387528 70387853 + 0 NA intron (ENSMUSG00000033644.5, intron 20 of 22) protein_coding-intron (ENSMUSG00000033644.5, intron 20 of 22) 27503 ENSMUSG00000058745.4 ENSMUSG00000058745 ENSMUST00000078149 Gm9174 processed_pseudogene Interval_157257 chr8 68707358 68708211 + 0 NA intron (ENSMUSG00000036356.15, intron 1 of 2) protein_coding-intron (ENSMUSG00000036356.15, intron 1 of 9) 87646 ENSMUSG00000085487.1 ENSMUSG00000085487 ENSMUST00000152660 Gm15654 processed_pseudogene Interval_17850 chr10 80386897 80388320 + 0 NA promoter-TSS (ENSMUSG00000048696.11) protein_coding-promoter-TSS (ENSMUSG00000048696.11) 5306 ENSMUSG00000084658.1 ENSMUSG00000084658 ENSMUST00000122709 Gm22721 miRNA Interval_6220 chr1 102606886 102607707 + 0 NA Intergenic Intergenic -148374 ENSMUSG00000099989.1 ENSMUSG00000099989 ENSMUST00000188225 Gm20281 processed_pseudogene Interval_164280 chr9 34983347 34984045 + 0 NA intron (ENSMUSG00000032036.15, intron 4 of 13) protein_coding-intron (ENSMUSG00000032036.15, intron 5 of 16) 23677 ENSMUSG00000089465.1 ENSMUSG00000089465 ENSMUST00000158840 Gm23702 rRNA Interval_64622 chr16 13722511 13723594 + 0 NA intron (ENSMUSG00000022683.13, intron 2 of 2) protein_coding-intron (ENSMUSG00000022683.13, intron 3 of 3) -6784 ENSMUSG00000086550.2 ENSMUSG00000086550 ENSMUST00000141172 Pla2g10os antisense Interval_48994 chr13 106790660 106790843 + 0 NA intron (ENSMUSG00000101308.1, intron 2 of 3) antisense-intron (ENSMUSG00000101308.1, intron 2 of 3) 2681 ENSMUSG00000101308.1 ENSMUSG00000101308 ENSMUST00000187867 Gm28989 antisense Interval_25829 chr11 51999661 52001210 + 0 NA promoter-TSS (ENSMUSG00000020390.12) protein_coding-promoter-TSS (ENSMUSG00000020390.12) 327 ENSMUSG00000020390.12 ENSMUSG00000020390 ENSMUST00000147833 Ube2b protein_coding Interval_4976 chr1 83138648 83138945 + 0 NA Intergenic Intergenic -19188 ENSMUSG00000101173.1 ENSMUSG00000101173 ENSMUST00000186994 Gm29519 processed_pseudogene Interval_150322 chr7 109589984 109591722 + 0 NA intron (ENSMUSG00000031024.13, intron 2 of 2) protein_coding-intron (ENSMUSG00000031024.13, intron 1 of 19) 25900 ENSMUSG00000031024.13 ENSMUSG00000031024 ENSMUST00000208734 Denn2b protein_coding Interval_16510 chr10 63279691 63280113 + 0 NA intron (ENSMUSG00000020064.9, intron 1 of 6) protein_coding-intron (ENSMUSG00000020064.9, intron 8 of 24) 9812 ENSMUSG00000112759.1 ENSMUSG00000112759 ENSMUST00000217955 Gm47615 TEC Interval_6230 chr1 103140284 103140577 + 0 NA Intergenic Intergenic -31496 ENSMUSG00000100955.1 ENSMUSG00000100955 ENSMUST00000186155 Gm18728 unprocessed_pseudogene Interval_14554 chr10 35443947 35444232 + 0 NA Intergenic Intergenic 41307 ENSMUSG00000111753.1 ENSMUSG00000111753 ENSMUST00000214107 1700054O05Rik lincRNA Interval_61712 chr15 83526337 83527672 + 0 NA exon (ENSMUSG00000016758.4, exon 1 of 5) protein_coding-exon (ENSMUSG00000016758.4, exon 1 of 5) 132 ENSMUSG00000016758.4 ENSMUSG00000016758 ENSMUST00000229964 Bik protein_coding Interval_43203 chr13 25150252 25150713 + 0 NA intron (ENSMUSG00000035910.15, intron 7 of 9) protein_coding-intron (ENSMUSG00000035910.15, intron 7 of 9) -19418 ENSMUSG00000082667.1 ENSMUSG00000082667 ENSMUST00000118813 Gm11348 processed_pseudogene Interval_109177 chr3 137642204 137642982 + 0 NA Intergenic Intergenic 2188 ENSMUSG00000105325.1 ENSMUSG00000105325 ENSMUST00000198288 Gm30946 processed_pseudogene Interval_54123 chr14 65510210 65510950 + 0 NA Intergenic Intergenic 82472 ENSMUSG00000022031.6 ENSMUSG00000022031 ENSMUST00000224743 Elp3 protein_coding Interval_92717 chr2 63891379 63892398 + 0 NA Intergenic Intergenic 206122 ENSMUSG00000075324.13 ENSMUSG00000075324 ENSMUST00000153538 Fign protein_coding Interval_162815 chr9 9415428 9415697 + 0 NA intron (ENSMUSG00000111061.1, intron 2 of 3) lincRNA-intron (ENSMUSG00000111061.1, intron 2 of 3) -19030 ENSMUSG00000111317.1 ENSMUSG00000111317 ENSMUST00000217395 Gm47333 processed_pseudogene Interval_7693 chr1 133087397 133088082 + 0 NA intron (ENSMUSG00000026447.17, intron 15 of 32) protein_coding-intron (ENSMUSG00000026447.17, intron 15 of 32) 19160 ENSMUSG00000026447.17 ENSMUSG00000026447 ENSMUST00000239467 Pik3c2b protein_coding Interval_111597 chr4 24284264 24284906 + 0 NA Intergenic Intergenic 46485 ENSMUSG00000083154.1 ENSMUSG00000083154 ENSMUST00000117711 Gm11892 processed_pseudogene Interval_113020 chr4 46935610 46936553 + 0 NA intron (ENSMUSG00000039809.10, intron 1 of 18) protein_coding-intron (ENSMUSG00000039809.10, intron 1 of 18) 74700 ENSMUSG00000048824.7 ENSMUSG00000048824 ENSMUST00000135777 Gm568 lincRNA Interval_1157 chr1 16260528 16260773 + 0 NA intron (ENSMUSG00000089982.7, intron 2 of 3) protein_coding-intron (ENSMUSG00000025920.19, intron 11 of 12) 7058 ENSMUSG00000089982.7 ENSMUSG00000089982 ENSMUST00000159190 Gm7568 antisense Interval_132311 chr5 144098503 144098803 + 0 NA Intergenic Intergenic -1783 ENSMUSG00000038970.7 ENSMUSG00000038970 ENSMUST00000041804 Lmtk2 protein_coding Interval_158601 chr8 84704101 84705357 + 0 NA TTS (ENSMUSG00000034041.5) protein_coding-TTS (ENSMUSG00000034041.5) 2987 ENSMUSG00000001911.16 ENSMUSG00000001911 ENSMUST00000126806 Nfix protein_coding Interval_19378 chr10 98635971 98636200 + 0 NA Intergenic Intergenic 63625 ENSMUSG00000112647.1 ENSMUSG00000112647 ENSMUST00000217680 Gm5427 lincRNA Interval_170641 chr9 109854007 109854452 + 0 NA Intergenic Intergenic -4612 ENSMUSG00000038357.10 ENSMUSG00000038357 ENSMUST00000112022 Camp protein_coding Interval_135259 chr6 37895236 37896258 + 0 NA intron (ENSMUSG00000029833.17, intron 2 of 7) protein_coding-intron (ENSMUSG00000029833.17, intron 1 of 18) 24936 ENSMUSG00000029833.17 ENSMUSG00000029833 ENSMUST00000135387 Trim24 protein_coding Interval_49134 chr13 108346806 108347291 + 0 NA intron (ENSMUSG00000021697.12, intron 1 of 4) protein_coding-intron (ENSMUSG00000021697.12, intron 2 of 10) -10378 ENSMUSG00000021697.12 ENSMUSG00000021697 ENSMUST00000172402 Depdc1b protein_coding Interval_148546 chr7 82318112 82318367 + 0 NA Intergenic Intergenic -24029 ENSMUSG00000109479.1 ENSMUSG00000109479 ENSMUST00000208587 Gm44919 TEC Interval_95909 chr2 118271025 118272073 + 0 NA intron (ENSMUSG00000045339.7, intron 3 of 3) lincRNA-intron (ENSMUSG00000045339.7, intron 3 of 3) 4452 ENSMUSG00000045339.7 ENSMUSG00000045339 ENSMUST00000171038 A930104D05Rik lincRNA Interval_41389 chr12 113232906 113233475 + 0 NA Intergenic Intergenic 19041 ENSMUSG00000087842.1 ENSMUSG00000087842 ENSMUST00000157217 Gm25622 snRNA Interval_67197 chr16 44330816 44333091 + 0 NA intron (ENSMUSG00000022696.17, intron 1 of 24) protein_coding-intron (ENSMUSG00000022696.17, intron 1 of 25) -15461 ENSMUSG00000043065.12 ENSMUSG00000043065 ENSMUST00000126228 Spice1 protein_coding Interval_114547 chr4 82426214 82427433 + 0 NA intron (ENSMUSG00000008575.17, intron 2 of 4) protein_coding-intron (ENSMUSG00000008575.17, intron 2 of 11) -12587 ENSMUSG00000084595.1 ENSMUSG00000084595 ENSMUST00000122646 n-R5s188 rRNA Interval_35415 chr12 21445415 21445628 + 0 NA Intergenic Intergenic 27642 ENSMUSG00000097055.2 ENSMUSG00000097055 ENSMUST00000227598 Gm4419 antisense Interval_103132 chr3 35763919 35764251 + 0 NA intron (ENSMUSG00000037400.17, intron 1 of 21) protein_coding-intron (ENSMUSG00000037400.17, intron 1 of 29) 28712 ENSMUSG00000064834.1 ENSMUSG00000064834 ENSMUST00000082900 Gm25696 snRNA Interval_141680 chr6 133270745 133271850 + 0 NA Intergenic Intergenic -20919 ENSMUSG00000055594.6 ENSMUSG00000055594 ENSMUST00000048459 5530400C23Rik protein_coding Interval_72587 chr17 30843604 30844675 + 0 NA intron (ENSMUSG00000033826.10, intron 86 of 90) protein_coding-intron (ENSMUSG00000033826.10, intron 88 of 92) 13297 ENSMUSG00000117760.1 ENSMUSG00000117760 ENSMUST00000237260 Gm41561 antisense Interval_27006 chr11 62327372 62328912 + 0 NA TTS (ENSMUSG00000042298.18) protein_coding-TTS (ENSMUSG00000042298.18) -3279 ENSMUSG00000081944.1 ENSMUSG00000081944 ENSMUST00000121709 Gm12276 processed_pseudogene Interval_168885 chr9 88362197 88362932 + 0 NA intron (ENSMUSG00000032420.8, intron 3 of 5) protein_coding-intron (ENSMUSG00000032420.8, intron 3 of 8) 6877 ENSMUSG00000032420.8 ENSMUSG00000032420 ENSMUST00000217134 Nt5e protein_coding Interval_93798 chr2 76979813 76980687 + 0 NA promoter-TSS (ENSMUSG00000051747.15) protein_coding-promoter-TSS (ENSMUSG00000051747.15) 42446 ENSMUSG00000044033.16 ENSMUSG00000044033 ENSMUST00000111833 Ccdc141 protein_coding Interval_23662 chr11 24202332 24203884 + 0 NA promoter-TSS (ENSMUSG00000086117.1) lincRNA-promoter-TSS (ENSMUSG00000086117.1) -484 ENSMUSG00000086117.1 ENSMUSG00000086117 ENSMUST00000149592 Gm12065 lincRNA Interval_171000 chr9 113629471 113630678 + 0 NA Intergenic Intergenic 11980 ENSMUSG00000111364.1 ENSMUSG00000111364 ENSMUST00000213455 Gm36745 lincRNA Interval_110725 chr4 7271566 7271773 + 0 NA Intergenic Intergenic -232155 ENSMUSG00000083023.1 ENSMUSG00000083023 ENSMUST00000121663 Gm11804 processed_pseudogene Interval_42861 chr13 20536296 20536911 + 0 NA intron (ENSMUSG00000041112.17, intron 1 of 4) protein_coding-intron (ENSMUSG00000041112.17, intron 16 of 21) 31808 ENSMUSG00000113557.1 ENSMUSG00000113557 ENSMUST00000220999 Gm47657 TEC Interval_23466 chr11 22789512 22789993 + 0 NA intron (ENSMUSG00000051650.11, intron 3 of 5) protein_coding-intron (ENSMUSG00000051650.11, intron 3 of 5) -2505 ENSMUSG00000082576.1 ENSMUSG00000082576 ENSMUST00000118614 Gm12058 processed_pseudogene Interval_98823 chr2 155331273 155331620 + 0 NA intron (ENSMUSG00000038383.16, intron 4 of 11) protein_coding-intron (ENSMUSG00000038383.16, intron 4 of 11) -25371 ENSMUSG00000076216.1 ENSMUSG00000076216 ENSMUST00000102261 Mir695 miRNA Interval_88426 chr2 5001655 5001847 + 0 NA promoter-TSS (ENSMUSG00000026669.14) protein_coding-promoter-TSS (ENSMUSG00000026669.14) -6913 ENSMUSG00000026669.14 ENSMUSG00000026669 ENSMUST00000125851 Mcm10 protein_coding Interval_95692 chr2 114195588 114195780 + 0 NA exon (ENSMUSG00000040321.3, exon 2 of 2) protein_coding-exon (ENSMUSG00000040321.3, exon 2 of 2) 5756 ENSMUSG00000040321.3 ENSMUSG00000040321 ENSMUST00000123562 Zfp770 protein_coding Interval_130302 chr5 125509294 125510026 + 0 NA exon (ENSMUSG00000029482.4, exon 1 of 3) protein_coding-exon (ENSMUSG00000029482.4, exon 1 of 3) -5583 ENSMUSG00000029482.4 ENSMUSG00000029482 ENSMUST00000200286 Aacs protein_coding Interval_135147 chr6 36893639 36894103 + 0 NA intron (ENSMUSG00000038665.15, intron 28 of 32) protein_coding-intron (ENSMUSG00000038665.15, intron 28 of 32) -43177 ENSMUSG00000029837.2 ENSMUSG00000029837 ENSMUST00000031863 1700111E14Rik antisense Interval_158709 chr8 85472412 85473939 + 0 NA Intergenic Intergenic -40361 ENSMUSG00000036934.9 ENSMUSG00000036934 ENSMUST00000210556 4921524J17Rik protein_coding Interval_95989 chr2 118997816 118999770 + 0 NA intron (ENSMUSG00000084802.1, intron 1 of 1) antisense-intron (ENSMUSG00000084802.1, intron 1 of 1) 1725 ENSMUSG00000084802.1 ENSMUSG00000084802 ENSMUST00000130025 Gm14089 antisense Interval_91238 chr2 36234996 36235358 + 0 NA intron (ENSMUSG00000047250.13, intron 1 of 3) protein_coding-intron (ENSMUSG00000047250.13, intron 2 of 10) -5536 ENSMUSG00000047250.13 ENSMUSG00000047250 ENSMUST00000133777 Ptgs1 protein_coding Interval_61426 chr15 81546602 81546914 + 0 NA Intergenic Intergenic 38270 ENSMUSG00000103520.1 ENSMUSG00000103520 ENSMUST00000192082 1110025M09Rik TEC Interval_373 chr1 4687927 4689471 + 0 NA exon (ENSMUSG00000098104.1, exon 1 of 1) processed_pseudogene-exon (ENSMUSG00000098104.1, exon 1 of 1) 704 ENSMUSG00000098104.1 ENSMUSG00000098104 ENSMUST00000182774 Gm6085 processed_pseudogene Interval_112256 chr4 38795243 38795742 + 0 NA intron (ENSMUSG00000085632.1, intron 1 of 5) lincRNA-intron (ENSMUSG00000085632.1, intron 1 of 5) 59991 ENSMUSG00000085632.1 ENSMUSG00000085632 ENSMUST00000126314 Gm12381 lincRNA Interval_54581 chr14 70798513 70798825 + 0 NA Intergenic Intergenic 22790 ENSMUSG00000022102.13 ENSMUSG00000022102 ENSMUST00000164691 Dok2 protein_coding Interval_14131 chr10 27966313 27966683 + 0 NA Intergenic Intergenic 30134 ENSMUSG00000064208.6 ENSMUSG00000064208 ENSMUST00000077776 Gm10145 processed_pseudogene Interval_89848 chr2 25962741 25963040 + 0 NA intron (ENSMUSG00000026933.17, intron 3 of 16) protein_coding-intron (ENSMUSG00000026933.17, intron 3 of 16) 20392 ENSMUSG00000026933.17 ENSMUSG00000026933 ENSMUST00000127823 Camsap1 protein_coding Interval_101845 chr3 9968319 9969059 + 0 NA Intergenic Intergenic 3312 ENSMUSG00000103698.1 ENSMUSG00000103698 ENSMUST00000192578 Gm17877 processed_pseudogene Interval_125943 chr5 76103430 76104672 + 0 NA Intergenic Intergenic -36649 ENSMUSG00000029233.15 ENSMUSG00000029233 ENSMUST00000124217 Srd5a3 protein_coding Interval_39933 chr12 99883157 99885269 + 0 NA promoter-TSS (ENSMUSG00000021176.6) protein_coding-promoter-TSS (ENSMUSG00000021176.6) 199 ENSMUSG00000021176.6 ENSMUSG00000021176 ENSMUST00000221197 Efcab11 protein_coding Interval_28277 chr11 74847783 74848828 + 0 NA TTS (ENSMUSG00000038351.14) protein_coding-TTS (ENSMUSG00000038351.14) 11979 ENSMUSG00000000282.12 ENSMUSG00000000282 ENSMUST00000132150 Mnt protein_coding Interval_54981 chr14 76654721 76655163 + 0 NA Intergenic Intergenic -18078 ENSMUSG00000115143.1 ENSMUSG00000115143 ENSMUST00000227724 Fkbp1a-ps1 processed_pseudogene Interval_122391 chr5 21910900 21911237 + 0 NA exon (ENSMUSG00000073152.4, exon 1 of 4) antisense-exon (ENSMUSG00000073152.4, exon 1 of 4) 137 ENSMUSG00000073152.4 ENSMUSG00000073152 ENSMUST00000084713 Gm10475 antisense Interval_101628 chr3 8123079 8124600 + 0 NA Intergenic Intergenic -90493 ENSMUSG00000103725.1 ENSMUSG00000103725 ENSMUST00000195642 Gm7103 processed_pseudogene Interval_138211 chr6 86329876 86330185 + 0 NA Intergenic Intergenic -4001 ENSMUSG00000072940.5 ENSMUSG00000072940 ENSMUST00000119024 Gm10443 processed_pseudogene Interval_3675 chr1 60636478 60636695 + 0 NA Intergenic Intergenic -22783 ENSMUSG00000088973.1 ENSMUSG00000088973 ENSMUST00000158348 Gm23762 miRNA Interval_69251 chr16 91688014 91689255 + 0 NA promoter-TSS (ENSMUSG00000022960.13) protein_coding-promoter-TSS (ENSMUSG00000022960.13) -264 ENSMUSG00000085169.2 ENSMUSG00000085169 ENSMUST00000156242 Gm10785 antisense Interval_115587 chr4 101146076 101147514 + 0 NA intron (ENSMUSG00000035275.14, intron 11 of 11) protein_coding-intron (ENSMUSG00000035275.14, intron 11 of 11) -39969 ENSMUSG00000077677.1 ENSMUSG00000077677 ENSMUST00000104489 Gm24468 snRNA Interval_36869 chr12 54830064 54831091 + 0 NA Intergenic Intergenic -32070 ENSMUSG00000113209.1 ENSMUSG00000113209 ENSMUST00000220682 1700081N11Rik bidirectional_promoter_lncRNA Interval_64380 chr16 10960757 10961821 + 0 NA intron (ENSMUSG00000022500.15, intron 3 of 3) protein_coding-intron (ENSMUSG00000022500.15, intron 3 of 3) -4435 ENSMUSG00000093897.1 ENSMUSG00000093897 ENSMUST00000177685 Gm26268 miRNA Interval_38252 chr12 76659884 76660177 + 0 NA intron (ENSMUSG00000021061.15, intron 1 of 31) protein_coding-intron (ENSMUSG00000021061.15, intron 1 of 35) -31950 ENSMUSG00000088356.1 ENSMUSG00000088356 ENSMUST00000157731 Gm24010 misc_RNA Interval_134354 chr6 26301448 26302648 + 0 NA Intergenic Intergenic 158382 ENSMUSG00000088387.1 ENSMUSG00000088387 ENSMUST00000157762 Gm24691 snRNA Interval_135828 chr6 47626731 47627249 + 0 NA Intergenic Intergenic -8307 ENSMUSG00000108180.1 ENSMUSG00000108180 ENSMUST00000204231 Gm44141 TEC Interval_7437 chr1 131311308 131312607 + 0 NA promoter-TSS (ENSMUSG00000026425.15) protein_coding-promoter-TSS (ENSMUSG00000026425.15) 21113 ENSMUSG00000026425.15 ENSMUSG00000026425 ENSMUST00000187273 Srgap2 protein_coding Interval_82386 chr18 73607447 73607640 + 0 NA Intergenic Intergenic -3973 ENSMUSG00000064527.1 ENSMUSG00000064527 ENSMUST00000082593 Gm26438 misc_RNA Interval_136122 chr6 51219695 51220254 + 0 NA Intergenic Intergenic 49936 ENSMUSG00000065505.1 ENSMUSG00000065505 ENSMUST00000083571 Mir148a miRNA Interval_83602 chr18 90504385 90504630 + 0 NA promoter-TSS (ENSMUSG00000077402.1) snoRNA-promoter-TSS (ENSMUSG00000077402.1) -108 ENSMUSG00000077402.1 ENSMUSG00000077402 ENSMUST00000104214 Gm25418 snoRNA Interval_168814 chr9 87424645 87426116 + 0 NA Intergenic Intergenic 31130 ENSMUSG00000099385.1 ENSMUSG00000099385 ENSMUST00000188230 Gm9540 processed_pseudogene Interval_25094 chr11 43820216 43821889 + 0 NA intron (ENSMUSG00000050541.14, intron 1 of 1) protein_coding-intron (ENSMUSG00000050541.14, intron 4 of 4) 15280 ENSMUSG00000050541.14 ENSMUSG00000050541 ENSMUST00000139906 Adra1b protein_coding Interval_3208 chr1 54849617 54850526 + 0 NA intron (ENSMUSG00000052331.14, intron 1 of 7) protein_coding-intron (ENSMUSG00000052331.14, intron 1 of 27) 66523 ENSMUSG00000102642.1 ENSMUSG00000102642 ENSMUST00000193052 A130048G24Rik TEC Interval_41260 chr12 112200162 112200564 + 0 NA Intergenic Intergenic 4790 ENSMUSG00000113282.1 ENSMUSG00000113282 ENSMUST00000220716 Gm20368 processed_pseudogene Interval_19216 chr10 95557297 95558389 + 0 NA intron (ENSMUSG00000020029.6, intron 1 of 4) protein_coding-intron (ENSMUSG00000020029.6, intron 1 of 4) 1478 ENSMUSG00000092867.1 ENSMUSG00000092867 ENSMUST00000175126 Mir3058 miRNA Interval_78349 chr18 12095404 12095606 + 0 NA intron (ENSMUSG00000049411.15, intron 3 of 3) protein_coding-intron (ENSMUSG00000049411.15, intron 3 of 12) 25975 ENSMUSG00000049411.15 ENSMUSG00000049411 ENSMUST00000234833 Tmem241 protein_coding Interval_172040 chr9 123804001 123804239 + 0 NA intron (ENSMUSG00000025241.16, intron 14 of 17) protein_coding-intron (ENSMUSG00000025241.16, intron 15 of 18) -2379 ENSMUSG00000048521.8 ENSMUSG00000048521 ENSMUST00000216072 Cxcr6 protein_coding Interval_156958 chr8 62417252 62418286 + 0 NA Intergenic Intergenic 70719 ENSMUSG00000109687.1 ENSMUSG00000109687 ENSMUST00000210003 Hspd1-ps2 processed_pseudogene Interval_97532 chr2 139354263 139354452 + 0 NA intron (ENSMUSG00000085071.1, intron 2 of 5) processed_transcript-intron (ENSMUSG00000085071.1, intron 2 of 5) 29983 ENSMUSG00000081799.1 ENSMUSG00000081799 ENSMUST00000117817 Gm14071 processed_pseudogene Interval_55650 chr14 98095510 98095698 + 0 NA intron (ENSMUSG00000055639.16, intron 1 of 9) protein_coding-intron (ENSMUSG00000055639.16, intron 1 of 10) -22905 ENSMUSG00000086133.1 ENSMUSG00000086133 ENSMUST00000144274 Gm16331 processed_pseudogene Interval_31959 chr11 104162832 104163592 + 0 NA intron (ENSMUSG00000018634.10, intron 3 of 12) protein_coding-intron (ENSMUSG00000018634.10, intron 3 of 12) -23115 ENSMUSG00000049506.7 ENSMUSG00000049506 ENSMUST00000059448 Sppl2c protein_coding Interval_9440 chr1 157101070 157101789 + 0 NA intron (ENSMUSG00000026592.13, intron 5 of 7) protein_coding-intron (ENSMUSG00000026592.13, intron 5 of 8) 7220 ENSMUSG00000026592.13 ENSMUSG00000026592 ENSMUST00000148649 Tex35 protein_coding Interval_120320 chr4 147856843 147857441 + 0 NA Intergenic Intergenic -8776 ENSMUSG00000059423.13 ENSMUSG00000059423 ENSMUST00000135798 Zfp933 protein_coding Interval_165498 chr9 48712992 48714174 + 0 NA intron (ENSMUSG00000066687.5, intron 4 of 6) protein_coding-intron (ENSMUSG00000066687.5, intron 4 of 6) -116208 ENSMUSG00000032271.13 ENSMUSG00000032271 ENSMUST00000128076 Nnmt protein_coding Interval_105011 chr3 79753559 79754049 + 0 NA Intergenic Intergenic -76928 ENSMUSG00000098204.1 ENSMUSG00000098204 ENSMUST00000182345 Gm26984 sense_intronic Interval_69625 chr16 94696178 94696400 + 0 NA TTS (ENSMUSG00000022897.15) protein_coding-TTS (ENSMUSG00000022897.15) 17614 ENSMUSG00000116822.1 ENSMUSG00000116822 ENSMUST00000232250 Gm41504 TEC Interval_153629 chr8 4105747 4106350 + 0 NA promoter-TSS (ENSMUSG00000051906.15) protein_coding-promoter-TSS (ENSMUSG00000051906.15) -320 ENSMUSG00000051906.15 ENSMUSG00000051906 ENSMUST00000128568 Cd209f protein_coding Interval_164928 chr9 43177923 43178453 + 0 NA intron (ENSMUSG00000032015.16, intron 2 of 12) protein_coding-intron (ENSMUSG00000032015.16, intron 2 of 12) -34984 ENSMUSG00000032015.16 ENSMUSG00000032015 ENSMUST00000213862 Pou2f3 protein_coding Interval_151516 chr7 123211032 123212569 + 0 NA Intergenic Intergenic 40154 ENSMUSG00000052707.8 ENSMUSG00000052707 ENSMUST00000206126 Tnrc6a protein_coding Interval_120287 chr4 145199970 145200921 + 0 NA Intergenic Intergenic -44959 ENSMUSG00000020220.16 ENSMUSG00000020220 ENSMUST00000132700 Vps13d protein_coding Interval_158064 chr8 78502644 78503564 + 0 NA Intergenic Intergenic 5775 ENSMUSG00000037070.10 ENSMUSG00000037070 ENSMUST00000211719 Rbmxl1 protein_coding Interval_122643 chr5 24416092 24416867 + 0 NA promoter-TSS (ENSMUSG00000038276.12) protein_coding-promoter-TSS (ENSMUSG00000038276.12) -98 ENSMUSG00000038276.12 ENSMUSG00000038276 ENSMUST00000198442 Asic3 protein_coding Interval_89802 chr2 25541605 25541867 + 0 NA intron (ENSMUSG00000026942.13, intron 1 of 10) protein_coding-intron (ENSMUSG00000026942.13, intron 1 of 10) -1743 ENSMUSG00000083043.1 ENSMUSG00000083043 ENSMUST00000121701 Gm13433 processed_pseudogene Interval_147601 chr7 68984030 68984324 + 0 NA Intergenic Intergenic -5227 ENSMUSG00000109524.1 ENSMUSG00000109524 ENSMUST00000207562 Gm44691 lincRNA Interval_125570 chr5 71831639 71832072 + 0 NA intron (ENSMUSG00000029212.11, intron 4 of 7) protein_coding-intron (ENSMUSG00000029212.11, intron 3 of 8) -132031 ENSMUSG00000105489.1 ENSMUSG00000105489 ENSMUST00000199398 Gm38562 antisense Interval_33888 chr11 119210104 119210439 + 0 NA TTS (ENSMUSG00000039976.4) protein_coding-TTS (ENSMUSG00000039976.4) -9889 ENSMUSG00000087404.1 ENSMUSG00000087404 ENSMUST00000143291 Gm11752 lincRNA Interval_123946 chr5 36795918 36798270 + 0 NA promoter-TSS (ENSMUSG00000055302.5) protein_coding-promoter-TSS (ENSMUSG00000055302.5) -322 ENSMUSG00000055302.5 ENSMUSG00000055302 ENSMUST00000068795 Mrfap1 protein_coding Interval_172676 chrX 42033298 42033529 + 0 NA Intergenic Intergenic -26508 ENSMUSG00000025860.15 ENSMUSG00000025860 ENSMUST00000026978 Xiap protein_coding Interval_47590 chr13 89652003 89652171 + 0 NA Intergenic Intergenic -10683 ENSMUSG00000089972.3 ENSMUSG00000089972 ENSMUST00000162402 Gm16318 processed_pseudogene Interval_76845 chr17 84472622 84473759 + 0 NA Intergenic Intergenic 78053 ENSMUSG00000117391.1 ENSMUSG00000117391 ENSMUST00000234072 4930500A05Rik antisense Interval_15219 chr10 43438553 43440192 + 0 NA intron (ENSMUSG00000038240.13, intron 7 of 7) protein_coding-intron (ENSMUSG00000038240.13, intron 7 of 7) 17129 ENSMUSG00000094955.2 ENSMUSG00000094955 ENSMUST00000178135 Gm3699 processed_pseudogene Interval_65063 chr16 18797843 18799249 + 0 NA intron (ENSMUSG00000000028.15, intron 7 of 17) protein_coding-intron (ENSMUSG00000000028.15, intron 9 of 19) 13045 ENSMUSG00000000028.15 ENSMUSG00000000028 ENSMUST00000231819 Cdc45 protein_coding Interval_52807 chr14 50798661 50798913 + 0 NA intron (ENSMUSG00000071470.4, intron 2 of 2) protein_coding-intron (ENSMUSG00000071470.4, intron 2 of 2) 8945 ENSMUSG00000071470.4 ENSMUSG00000071470 ENSMUST00000227614 Ccnb1ip1 protein_coding Interval_112261 chr4 39266407 39266867 + 0 NA Intergenic Intergenic 3093 ENSMUSG00000082238.1 ENSMUSG00000082238 ENSMUST00000120628 Gm12383 processed_pseudogene Interval_155602 chr8 35037025 35037249 + 0 NA Intergenic Intergenic 16246 ENSMUSG00000110361.1 ENSMUSG00000110361 ENSMUST00000209635 Gm8291 processed_pseudogene Interval_1904 chr1 34450999 34451576 + 0 NA Intergenic Intergenic 3040 ENSMUSG00000026127.13 ENSMUSG00000026127 ENSMUST00000191000 Imp4 protein_coding Interval_27030 chr11 62466099 62467603 + 0 NA intron (ENSMUSG00000014245.8, intron 1 of 6) protein_coding-intron (ENSMUSG00000014245.8, intron 1 of 6) 8243 ENSMUSG00000014245.8 ENSMUSG00000014245 ENSMUST00000147918 Pigl protein_coding Interval_29132 chr11 80503817 80504527 + 0 NA intron (ENSMUSG00000035441.14, intron 21 of 21) protein_coding-intron (ENSMUSG00000035441.14, intron 21 of 21) 4934 ENSMUSG00000085078.1 ENSMUSG00000085078 ENSMUST00000133400 C030013C21Rik sense_intronic Interval_135844 chr6 47871960 47872576 + 0 NA exon (ENSMUSG00000062519.13, exon 5 of 5) protein_coding-exon (ENSMUSG00000062519.13, exon 5 of 5) -5388 ENSMUSG00000025821.9 ENSMUSG00000025821 ENSMUST00000125957 Zfp282 protein_coding Interval_59318 chr15 51607010 51608072 + 0 NA intron (ENSMUSG00000115563.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000115563.1, intron 1 of 2) 22094 ENSMUSG00000115563.1 ENSMUSG00000115563 ENSMUST00000227000 Gm34562 lincRNA Interval_160690 chr8 111612337 111613872 + 0 NA intron (ENSMUSG00000033545.14, intron 2 of 4) protein_coding-intron (ENSMUSG00000033545.14, intron 2 of 3) 15483 ENSMUSG00000031958.16 ENSMUSG00000031958 ENSMUST00000070004 Ldhd protein_coding Interval_138418 chr6 88026935 88027691 + 0 NA intron (ENSMUSG00000079477.9, intron 1 of 4) protein_coding-intron (ENSMUSG00000079477.9, intron 1 of 7) 15154 ENSMUSG00000108268.1 ENSMUSG00000108268 ENSMUST00000204735 Gm44187 TEC Interval_161891 chr8 123486441 123486856 + 0 NA intron (ENSMUSG00000031967.15, intron 3 of 5) protein_coding-intron (ENSMUSG00000031967.15, intron 5 of 16) -6313 ENSMUSG00000031967.15 ENSMUSG00000031967 ENSMUST00000146795 Afg3l1 protein_coding Interval_164275 chr9 34898919 34900124 + 0 NA intron (ENSMUSG00000032036.15, intron 1 of 15) protein_coding-intron (ENSMUSG00000032036.15, intron 1 of 16) 29988 ENSMUSG00000053889.5 ENSMUSG00000053889 ENSMUST00000066604 Kirrel3os antisense Interval_12549 chr1 195153231 195153574 + 0 NA intron (ENSMUSG00000026616.16, intron 13 of 17) protein_coding-intron (ENSMUSG00000026616.16, intron 14 of 18) 10216 ENSMUSG00000026616.16 ENSMUSG00000026616 ENSMUST00000195722 Cr2 protein_coding Interval_75230 chr17 64950634 64951089 + 0 NA Intergenic Intergenic -6009 ENSMUSG00000077691.1 ENSMUSG00000077691 ENSMUST00000104503 Gm25344 snoRNA Interval_51925 chr14 33972724 33973136 + 0 NA intron (ENSMUSG00000044519.8, intron 1 of 1) protein_coding-intron (ENSMUSG00000044519.8, intron 1 of 1) 5834 ENSMUSG00000044519.8 ENSMUSG00000044519 ENSMUST00000166737 Zfp488 protein_coding Interval_103739 chr3 52242371 52242895 + 0 NA intron (ENSMUSG00000102510.2, intron 1 of 1) unprocessed_pseudogene-intron (ENSMUSG00000102510.2, intron 1 of 1) 4312 ENSMUSG00000102510.2 ENSMUSG00000102510 ENSMUST00000193866 Olfr1398-ps1 unprocessed_pseudogene Interval_118975 chr4 134799374 134799720 + 0 NA Intergenic Intergenic 11666 ENSMUSG00000028826.14 ENSMUSG00000028826 ENSMUST00000136113 Maco1 protein_coding Interval_34105 chr11 120666502 120666715 + 0 NA Intergenic Intergenic -5433 ENSMUSG00000042988.10 ENSMUSG00000042988 ENSMUST00000150458 Notum protein_coding Interval_143866 chr7 16845475 16846069 + 0 NA promoter-TSS (ENSMUSG00000041187.16) protein_coding-promoter-TSS (ENSMUSG00000041187.16) 14673 ENSMUSG00000030374.15 ENSMUSG00000030374 ENSMUST00000183680 Strn4 protein_coding Interval_53712 chr14 61078452 61078809 + 0 NA Intergenic Intergenic 15203 ENSMUSG00000115627.1 ENSMUSG00000115627 ENSMUST00000227839 Gm41168 lincRNA Interval_75320 chr17 65853447 65853728 + 0 NA intron (ENSMUSG00000024096.17, intron 5 of 7) protein_coding-intron (ENSMUSG00000024096.17, intron 7 of 9) 24639 ENSMUSG00000061950.17 ENSMUSG00000061950 ENSMUST00000162703 Ppp4r1 protein_coding Interval_66724 chr16 36641228 36641454 + 0 NA intron (ENSMUSG00000022901.13, intron 1 of 7) protein_coding-intron (ENSMUSG00000022901.13, intron 1 of 7) -36822 ENSMUSG00000022901.13 ENSMUSG00000022901 ENSMUST00000145506 Cd86 protein_coding Interval_161936 chr8 123880753 123881197 + 0 NA intron (ENSMUSG00000092329.1, intron 1 of 15) protein_coding-intron (ENSMUSG00000092329.1, intron 1 of 15) 13776 ENSMUSG00000031972.5 ENSMUSG00000031972 ENSMUST00000212584 Acta1 protein_coding Interval_85136 chr19 23100959 23101176 + 0 NA Intergenic Intergenic -25143 ENSMUSG00000097930.2 ENSMUSG00000097930 ENSMUST00000181623 C330002G04Rik lincRNA Interval_120565 chr4 149405844 149406337 + 0 NA intron (ENSMUSG00000028960.20, intron 1 of 29) protein_coding-intron (ENSMUSG00000028960.20, intron 1 of 9) 19895 ENSMUSG00000028960.20 ENSMUSG00000028960 ENSMUST00000131986 Ube4b protein_coding Interval_46986 chr13 73936887 73938469 + 0 NA promoter-TSS (ENSMUSG00000057649.6) protein_coding-promoter-TSS (ENSMUSG00000057649.6) -960 ENSMUSG00000057649.6 ENSMUSG00000057649 ENSMUST00000221324 Brd9 protein_coding Interval_95294 chr2 105801816 105802013 + 0 NA intron (ENSMUSG00000027167.11, intron 2 of 3) protein_coding-intron (ENSMUSG00000027167.11, intron 5 of 7) 12408 ENSMUSG00000027167.11 ENSMUSG00000027167 ENSMUST00000148441 Elp4 protein_coding Interval_98477 chr2 152693244 152693960 + 0 NA intron (ENSMUSG00000019188.16, intron 1 of 1) protein_coding-intron (ENSMUSG00000019188.16, intron 7 of 10) 6567 ENSMUSG00000042814.8 ENSMUSG00000042814 ENSMUST00000062148 Mcts2 protein_coding Interval_1610 chr1 29894698 29895377 + 0 NA Intergenic Intergenic -35057 ENSMUSG00000101726.1 ENSMUSG00000101726 ENSMUST00000190177 Gm7858 processed_pseudogene Interval_117076 chr4 119389003 119389493 + 0 NA intron (ENSMUSG00000028637.16, intron 5 of 14) protein_coding-intron (ENSMUSG00000028637.16, intron 5 of 14) -4252 ENSMUSG00000118403.1 ENSMUSG00000118403 ENSMUST00000238574 Gm50484 antisense Interval_52797 chr14 50624374 50625533 + 0 NA Intergenic Intergenic 10050 ENSMUSG00000053815.5 ENSMUSG00000053815 ENSMUST00000066457 Olfr744 protein_coding Interval_66933 chr16 38603069 38604114 + 0 NA exon (ENSMUSG00000022799.4, exon 12 of 12) protein_coding-exon (ENSMUSG00000022799.4, exon 12 of 12) -30291 ENSMUSG00000091238.1 ENSMUSG00000091238 ENSMUST00000168897 Gm17103 antisense Interval_21368 chr10 128193851 128195407 + 0 NA promoter-TSS (ENSMUSG00000044005.13) protein_coding-promoter-TSS (ENSMUSG00000044005.13) -97 ENSMUSG00000044005.13 ENSMUSG00000044005 ENSMUST00000132441 Gls2 protein_coding Interval_26177 chr11 54918037 54918773 + 0 NA TTS (ENSMUSG00000020400.17) protein_coding-TTS (ENSMUSG00000020400.17) 15479 ENSMUSG00000018339.11 ENSMUSG00000018339 ENSMUST00000149324 Gpx3 protein_coding Interval_122141 chr5 18043231 18043434 + 0 NA Intergenic Intergenic 80783 ENSMUSG00000028777.8 ENSMUSG00000028777 ENSMUST00000030561 Gnat3 protein_coding Interval_137632 chr6 76854462 76855619 + 0 NA Intergenic Intergenic 288903 ENSMUSG00000063063.12 ENSMUSG00000063063 ENSMUST00000160252 Ctnna2 protein_coding Interval_15977 chr10 59819408 59820019 + 0 NA intron (ENSMUSG00000020111.15, intron 8 of 12) protein_coding-intron (ENSMUSG00000020111.15, intron 10 of 13) -1916 ENSMUSG00000094824.1 ENSMUSG00000094824 ENSMUST00000104610 Gm23803 snoRNA Interval_94347 chr2 90303279 90303526 + 0 NA Intergenic Intergenic -4688 ENSMUSG00000080809.3 ENSMUSG00000080809 ENSMUST00000214356 Olfr1273-ps polymorphic_pseudogene Interval_46595 chr13 67451031 67453423 + 0 NA promoter-TSS (ENSMUSG00000069206.14) protein_coding-promoter-TSS (ENSMUSG00000069206.14) 569 ENSMUSG00000103398.1 ENSMUSG00000103398 ENSMUST00000195630 Gm38307 TEC Interval_33754 chr11 118269650 118270039 + 0 NA intron (ENSMUSG00000033909.17, intron 13 of 18) protein_coding-intron (ENSMUSG00000033909.17, intron 13 of 20) 20228 ENSMUSG00000033909.17 ENSMUSG00000033909 ENSMUST00000151433 Usp36 protein_coding Interval_9896 chr1 163929594 163931241 + 0 NA intron (ENSMUSG00000026584.14, intron 1 of 13) protein_coding-intron (ENSMUSG00000026584.14, intron 1 of 13) 627 ENSMUSG00000026584.14 ENSMUSG00000026584 ENSMUST00000162920 Scyl3 protein_coding Interval_7454 chr1 131487771 131488015 + 0 NA intron (ENSMUSG00000026425.15, intron 2 of 4) protein_coding-intron (ENSMUSG00000026425.15, intron 2 of 22) 10909 ENSMUSG00000076287.1 ENSMUSG00000076287 ENSMUST00000102332 Gm24273 miRNA Interval_103539 chr3 48067946 48069663 + 0 NA Intergenic Intergenic -9537 ENSMUSG00000104110.1 ENSMUSG00000104110 ENSMUST00000192186 Gm37295 TEC Interval_78332 chr18 12020491 12021325 + 0 NA intron (ENSMUSG00000049411.15, intron 14 of 15) protein_coding-intron (ENSMUSG00000049411.15, intron 11 of 12) 100572 ENSMUSG00000049411.15 ENSMUSG00000049411 ENSMUST00000234833 Tmem241 protein_coding Interval_17855 chr10 80423301 80424235 + 0 NA intron (ENSMUSG00000020167.14, intron 2 of 17) protein_coding-intron (ENSMUSG00000020167.14, intron 3 of 18) 7217 ENSMUSG00000020167.14 ENSMUSG00000020167 ENSMUST00000156244 Tcf3 protein_coding Interval_153493 chr7 145197910 145198885 + 0 NA intron (ENSMUSG00000048677.9, intron 19 of 20) protein_coding-intron (ENSMUSG00000048677.9, intron 19 of 20) 9683 ENSMUSG00000109305.1 ENSMUSG00000109305 ENSMUST00000207841 Smim38 protein_coding Interval_144031 chr7 19068909 19069728 + 0 NA intron (ENSMUSG00000040866.13, intron 4 of 4) protein_coding-intron (ENSMUSG00000040866.13, intron 5 of 5) -8675 ENSMUSG00000030410.16 ENSMUSG00000030410 ENSMUST00000138997 Dmwd protein_coding Interval_62130 chr15 87656216 87657899 + 0 NA intron (ENSMUSG00000054863.9, intron 1 of 3) protein_coding-intron (ENSMUSG00000054863.9, intron 1 of 3) 112758 ENSMUSG00000054863.9 ENSMUSG00000054863 ENSMUST00000068088 Tafa5 protein_coding Interval_64852 chr16 16546573 16547891 + 0 NA intron (ENSMUSG00000022788.16, intron 1 of 8) protein_coding-intron (ENSMUSG00000022788.16, intron 1 of 6) 4909 ENSMUSG00000089861.1 ENSMUSG00000089861 ENSMUST00000160015 Gm16139 processed_pseudogene Interval_46058 chr13 60655803 60656053 + 0 NA intron (ENSMUSG00000021559.14, intron 2 of 26) protein_coding-intron (ENSMUSG00000021559.14, intron 2 of 26) 14138 ENSMUSG00000114277.1 ENSMUSG00000114277 ENSMUST00000225897 Gm48583 processed_pseudogene Interval_29653 chr11 85837070 85838464 + 0 NA intron (ENSMUSG00000000093.6, intron 5 of 6) protein_coding-intron (ENSMUSG00000000093.6, intron 5 of 6) 5216 ENSMUSG00000000093.6 ENSMUSG00000000093 ENSMUST00000000095 Tbx2 protein_coding Interval_168345 chr9 79130852 79131175 + 0 NA Intergenic Intergenic 70994 ENSMUSG00000110923.1 ENSMUSG00000110923 ENSMUST00000216797 Gm47499 lincRNA Interval_162804 chr9 9255076 9255303 + 0 NA intron (ENSMUSG00000085253.3, intron 3 of 3) antisense-intron (ENSMUSG00000085253.3, intron 3 of 3) -16289 ENSMUSG00000050730.17 ENSMUSG00000050730 ENSMUST00000183182 Arhgap42 protein_coding Interval_113865 chr4 59437538 59438988 + 0 NA exon (ENSMUSG00000038578.15, exon 1 of 17) protein_coding-exon (ENSMUSG00000038578.15, exon 1 of 17) -69397 ENSMUSG00000083979.1 ENSMUSG00000083979 ENSMUST00000117967 Gm12527 processed_pseudogene Interval_94315 chr2 88322895 88323134 + 0 NA exon (ENSMUSG00000083855.6, exon 2 of 2) protein_coding-exon (ENSMUSG00000083855.6, exon 2 of 2) 4201 ENSMUSG00000083855.6 ENSMUSG00000083855 ENSMUST00000214207 Olfr1175 protein_coding Interval_28468 chr11 76178780 76180117 + 0 NA promoter-TSS (ENSMUSG00000069808.13) protein_coding-promoter-TSS (ENSMUSG00000069808.13) 186 ENSMUSG00000017288.15 ENSMUSG00000017288 ENSMUST00000129256 Vps53 protein_coding Interval_84974 chr19 20810444 20810900 + 0 NA intron (ENSMUSG00000024749.9, intron 15 of 20) protein_coding-intron (ENSMUSG00000024749.9, intron 15 of 20) 3995 ENSMUSG00000024749.9 ENSMUSG00000024749 ENSMUST00000235546 Tmc1 protein_coding Interval_103683 chr3 51601334 51601920 + 0 NA Intergenic Intergenic 19321 ENSMUSG00000104075.1 ENSMUSG00000104075 ENSMUST00000193978 5430433H01Rik TEC Interval_147054 chr7 60216551 60216909 + 0 NA Intergenic Intergenic -56130 ENSMUSG00000109451.1 ENSMUSG00000109451 ENSMUST00000208834 Gm18129 processed_pseudogene Interval_34469 chr12 4475977 4477851 + 0 NA exon (ENSMUSG00000020647.10, exon 1 of 23) protein_coding-exon (ENSMUSG00000020647.10, exon 1 of 23) -32403 ENSMUSG00000111938.1 ENSMUSG00000111938 ENSMUST00000218374 2900045O20Rik lincRNA Interval_47353 chr13 81767010 81767267 + 0 NA Intergenic Intergenic 16611 ENSMUSG00000097793.1 ENSMUSG00000097793 ENSMUST00000181520 Gm17259 antisense Interval_173241 chrX 75111419 75111975 + 0 NA TTS (ENSMUSG00000031402.12) protein_coding-TTS (ENSMUSG00000031402.12) 10288 ENSMUSG00000089014.1 ENSMUSG00000089014 ENSMUST00000158389 Gm25520 snoRNA Interval_122945 chr5 27714472 27714755 + 0 NA intron (ENSMUSG00000061576.15, intron 20 of 25) protein_coding-intron (ENSMUSG00000061576.15, intron 20 of 25) 77078 ENSMUSG00000002221.11 ENSMUSG00000002221 ENSMUST00000199714 Paxip1 protein_coding Interval_144400 chr7 24922061 24923040 + 0 NA promoter-TSS (ENSMUSG00000040940.18) protein_coding-promoter-TSS (ENSMUSG00000040940.18) 18194 ENSMUSG00000040940.18 ENSMUSG00000040940 ENSMUST00000132786 Arhgef1 protein_coding Interval_78758 chr18 20466182 20466496 + 0 NA intron (ENSMUSG00000001804.9, intron 14 of 15) protein_coding-intron (ENSMUSG00000001804.9, intron 14 of 15) 30164 ENSMUSG00000001804.9 ENSMUSG00000001804 ENSMUST00000019426 Dsg4 protein_coding Interval_110237 chr3 154675456 154676014 + 0 NA intron (ENSMUSG00000078161.8, intron 1 of 13) protein_coding-intron (ENSMUSG00000078161.8, intron 1 of 13) 19034 ENSMUSG00000103204.1 ENSMUSG00000103204 ENSMUST00000195806 Gm38139 sense_overlapping Interval_77671 chr17 93964203 93964565 + 0 NA Intergenic Intergenic 167887 ENSMUSG00000117543.1 ENSMUSG00000117543 ENSMUST00000235005 Gm50004 processed_pseudogene Interval_132666 chr5 147040657 147042868 + 0 NA intron (ENSMUSG00000016520.7, intron 2 of 9) protein_coding-intron (ENSMUSG00000016520.7, intron 2 of 9) -22727 ENSMUSG00000016520.7 ENSMUSG00000016520 ENSMUST00000123092 Lnx2 protein_coding Interval_67191 chr16 44260741 44260961 + 0 NA intron (ENSMUSG00000022696.17, intron 17 of 24) protein_coding-intron (ENSMUSG00000022696.17, intron 17 of 25) 21647 ENSMUSG00000022696.17 ENSMUSG00000022696 ENSMUST00000124651 Sidt1 protein_coding Interval_130091 chr5 124207683 124207887 + 0 NA intron (ENSMUSG00000029406.15, intron 2 of 24) protein_coding-intron (ENSMUSG00000029406.15, intron 1 of 23) 12143 ENSMUSG00000089842.2 ENSMUSG00000089842 ENSMUST00000198466 Pitpnm2os2 antisense Interval_10080 chr1 165663521 165664139 + 0 NA intron (ENSMUSG00000040723.14, intron 2 of 6) protein_coding-intron (ENSMUSG00000040723.14, intron 2 of 6) -19142 ENSMUSG00000104517.1 ENSMUSG00000104517 ENSMUST00000192126 Gm18407 processed_pseudogene Interval_13569 chr10 19826928 19827314 + 0 NA Intergenic Intergenic 24338 ENSMUSG00000050473.5 ENSMUSG00000050473 ENSMUST00000059805 Slc35d3 protein_coding Interval_108240 chr3 122878553 122879196 + 0 NA intron (ENSMUSG00000097852.5, intron 5 of 6) antisense-intron (ENSMUSG00000097852.5, intron 5 of 6) -16198 ENSMUSG00000023057.5 ENSMUSG00000023057 ENSMUST00000023820 Fabp2 protein_coding Interval_110495 chr3 159674489 159675972 + 0 NA Intergenic Intergenic 76012 ENSMUSG00000028174.12 ENSMUSG00000028174 ENSMUST00000029824 Rpe65 protein_coding Interval_49425 chr13 111896314 111896886 + 0 NA Intergenic Intergenic -12423 ENSMUSG00000082433.2 ENSMUSG00000082433 ENSMUST00000122415 Gm9025 processed_pseudogene Interval_105418 chr3 86109828 86110352 + 0 NA intron (ENSMUSG00000028082.14, intron 5 of 12) protein_coding-intron (ENSMUSG00000028082.14, intron 7 of 14) 9556 ENSMUSG00000065847.1 ENSMUSG00000065847 ENSMUST00000083913 Gm25188 snoRNA Interval_38599 chr12 80380046 80381037 + 0 NA intron (ENSMUSG00000049106.7, intron 5 of 8) protein_coding-intron (ENSMUSG00000049106.7, intron 5 of 8) -3849 ENSMUSG00000049106.7 ENSMUSG00000049106 ENSMUST00000218498 Dcaf5 protein_coding Interval_106953 chr3 102161982 102162635 + 0 NA TTS (ENSMUSG00000027860.15) protein_coding-TTS (ENSMUSG00000027860.15) 27693 ENSMUSG00000106296.1 ENSMUSG00000106296 ENSMUST00000197326 4632404M16Rik sense_intronic Interval_23963 chr11 28941186 28941428 + 0 NA Intergenic Intergenic -15417 ENSMUSG00000081695.1 ENSMUSG00000081695 ENSMUST00000121462 Rpsa-ps5 processed_pseudogene Interval_33633 chr11 117647395 117647612 + 0 NA Intergenic Intergenic 36256 ENSMUSG00000054418.6 ENSMUSG00000054418 ENSMUST00000155384 2900041M22Rik processed_transcript Interval_160004 chr8 105693498 105695546 + 0 NA promoter-TSS (ENSMUSG00000050357.9) protein_coding-promoter-TSS (ENSMUSG00000050357.9) 5299 ENSMUSG00000038000.10 ENSMUSG00000038000 ENSMUST00000212650 Acd protein_coding Interval_73672 chr17 42640764 42640960 + 0 NA Intergenic Intergenic -29467 ENSMUSG00000043972.8 ENSMUSG00000043972 ENSMUST00000068355 Opn5 protein_coding Interval_174809 chrX 167212031 167213378 + 0 NA Intergenic Intergenic -3555 ENSMUSG00000049775.16 ENSMUSG00000049775 ENSMUST00000112175 Tmsb4x protein_coding Interval_55035 chr14 77299018 77300052 + 0 NA intron (ENSMUSG00000022012.9, intron 2 of 2) protein_coding-intron (ENSMUSG00000022012.9, intron 2 of 18) 44651 ENSMUSG00000115733.1 ENSMUSG00000115733 ENSMUST00000227726 Gm49001 transcribed_processed_pseudogene Interval_133196 chr5 150464747 150465187 + 0 NA TTS (ENSMUSG00000056602.12) protein_coding-TTS (ENSMUSG00000056602.12) 18185 ENSMUSG00000107262.1 ENSMUSG00000107262 ENSMUST00000201000 Gm18753 processed_pseudogene Interval_122973 chr5 28080204 28081089 + 0 NA Intergenic Intergenic 5980 ENSMUSG00000045294.11 ENSMUSG00000045294 ENSMUST00000199728 Insig1 protein_coding Interval_87247 chr19 47167768 47169277 + 0 NA Intergenic Intergenic 2612 ENSMUSG00000091230.1 ENSMUSG00000091230 ENSMUST00000169692 H1f11-ps processed_pseudogene Interval_108693 chr3 130272171 130272395 + 0 NA intron (ENSMUSG00000058897.18, intron 2 of 37) protein_coding-intron (ENSMUSG00000058897.18, intron 2 of 37) 66818 ENSMUSG00000065788.1 ENSMUSG00000065788 ENSMUST00000083854 Gm22682 snRNA Interval_164214 chr9 32607209 32607874 + 0 NA Intergenic Intergenic -5911 ENSMUSG00000110844.1 ENSMUSG00000110844 ENSMUST00000214084 Gm47680 lincRNA Interval_37432 chr12 68549873 68550388 + 0 NA Intergenic Intergenic 3483 ENSMUSG00000113503.1 ENSMUSG00000113503 ENSMUST00000221958 Gm47490 processed_pseudogene Interval_110182 chr3 154036345 154037047 + 0 NA intron (ENSMUSG00000028360.10, intron 1 of 21) protein_coding-intron (ENSMUSG00000028360.10, intron 1 of 21) -10227 ENSMUSG00000028360.10 ENSMUSG00000028360 ENSMUST00000144677 Slc44a5 protein_coding Interval_141358 chr6 127616638 127617909 + 0 NA intron (ENSMUSG00000061414.8, intron 6 of 18) protein_coding-intron (ENSMUSG00000061414.8, intron 5 of 6) -27167 ENSMUSG00000107253.1 ENSMUSG00000107253 ENSMUST00000202671 Gm43634 lincRNA Interval_27625 chr11 69098754 69100307 + 0 NA promoter-TSS (ENSMUSG00000020893.17) protein_coding-promoter-TSS (ENSMUSG00000020893.17) -628 ENSMUSG00000020893.17 ENSMUSG00000020893 ENSMUST00000102605 Per1 protein_coding Interval_105764 chr3 89213490 89214534 + 0 NA promoter-TSS (ENSMUSG00000064068.15) protein_coding-promoter-TSS (ENSMUSG00000064068.15) 323 ENSMUSG00000064068.15 ENSMUSG00000064068 ENSMUST00000174324 Mtx1 protein_coding Interval_139431 chr6 100126894 100127463 + 0 NA Intergenic Intergenic 16636 ENSMUSG00000107558.1 ENSMUSG00000107558 ENSMUST00000204605 2010109P13Rik TEC Interval_174222 chrX 140317838 140318406 + 0 NA Intergenic Intergenic 7174 ENSMUSG00000093102.1 ENSMUSG00000093102 ENSMUST00000175361 Mir3475 miRNA Interval_34324 chr12 3390696 3391212 + 0 NA intron (ENSMUSG00000020668.10, intron 6 of 8) protein_coding-intron (ENSMUSG00000020668.10, intron 5 of 7) 13112 ENSMUSG00000112308.1 ENSMUSG00000112308 ENSMUST00000217965 Gm48512 antisense Interval_149507 chr7 99224388 99224824 + 0 NA intron (ENSMUSG00000052396.7, intron 2 of 5) protein_coding-intron (ENSMUSG00000052396.7, intron 2 of 5) 13988 ENSMUSG00000052396.7 ENSMUSG00000052396 ENSMUST00000132343 Mogat2 protein_coding Interval_174821 chrX 167932436 167932846 + 0 NA intron (ENSMUSG00000049176.16, intron 3 of 19) protein_coding-intron (ENSMUSG00000049176.16, intron 1 of 16) 30326 ENSMUSG00000089132.1 ENSMUSG00000089132 ENSMUST00000158507 Gm24772 rRNA Interval_18361 chr10 85208902 85210651 + 0 NA Intergenic Intergenic 56546 ENSMUSG00000111752.1 ENSMUSG00000111752 ENSMUST00000213881 Gm38575 processed_transcript Interval_111963 chr4 32854299 32854672 + 0 NA intron (ENSMUSG00000040183.13, intron 1 of 3) protein_coding-intron (ENSMUSG00000040183.13, intron 3 of 16) 6198 ENSMUSG00000040183.13 ENSMUSG00000040183 ENSMUST00000149650 Ankrd6 protein_coding Interval_98197 chr2 149759546 149759827 + 0 NA intron (ENSMUSG00000087029.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000087029.1, intron 1 of 1) 16511 ENSMUSG00000081494.1 ENSMUSG00000081494 ENSMUST00000118417 Gm14130 processed_pseudogene Interval_84828 chr19 17179465 17179707 + 0 NA intron (ENSMUSG00000039126.10, intron 3 of 8) protein_coding-intron (ENSMUSG00000039126.10, intron 11 of 19) 53939 ENSMUSG00000039126.10 ENSMUSG00000039126 ENSMUST00000224117 Prune2 protein_coding Interval_63119 chr15 99194351 99196086 + 0 NA intron (ENSMUSG00000051934.5, intron 8 of 9) protein_coding-intron (ENSMUSG00000051934.5, intron 8 of 12) -20281 ENSMUSG00000087991.1 ENSMUSG00000087991 ENSMUST00000157366 Gm25057 misc_RNA Interval_152985 chr7 140367236 140367517 + 0 NA Intergenic Intergenic -1134 ENSMUSG00000110257.1 ENSMUSG00000110257 ENSMUST00000211097 Olfr529-ps1 unprocessed_pseudogene Interval_174764 chrX 166191140 166191377 + 0 NA TTS (ENSMUSG00000040621.14) protein_coding-TTS (ENSMUSG00000040621.14) 12856 ENSMUSG00000040621.14 ENSMUSG00000040621 ENSMUST00000152248 Gemin8 protein_coding Interval_66505 chr16 34490042 34490926 + 0 NA intron (ENSMUSG00000061751.16, intron 1 of 36) protein_coding-intron (ENSMUSG00000061751.16, intron 1 of 33) -175833 ENSMUSG00000022832.11 ENSMUSG00000022832 ENSMUST00000231612 Ropn1 protein_coding Interval_145033 chr7 29549583 29550460 + 0 NA Intergenic Intergenic -8558 ENSMUSG00000046958.10 ENSMUSG00000046958 ENSMUST00000053635 4930432E11Rik transcribed_unitary_pseudogene Interval_100865 chr2 172999711 173000919 + 0 NA exon (ENSMUSG00000027509.11, exon 1 of 12) protein_coding-exon (ENSMUSG00000027509.11, exon 1 of 12) -12146 ENSMUSG00000027509.11 ENSMUSG00000027509 ENSMUST00000138237 Rae1 protein_coding Interval_109326 chr3 138976799 138977257 + 0 NA exon (ENSMUSG00000104724.1, exon 1 of 1) TEC-exon (ENSMUSG00000104724.1, exon 1 of 1) 1053 ENSMUSG00000104724.1 ENSMUSG00000104724 ENSMUST00000198292 Gm43162 TEC Interval_57522 chr15 12065779 12066894 + 0 NA Intergenic Intergenic 18861 ENSMUSG00000115441.1 ENSMUSG00000115441 ENSMUST00000227908 Gm34759 lincRNA Interval_148290 chr7 80323930 80324605 + 0 NA promoter-TSS (ENSMUSG00000038930.11) protein_coding-promoter-TSS (ENSMUSG00000038930.11) -133 ENSMUSG00000038930.11 ENSMUSG00000038930 ENSMUST00000155124 Rccd1 protein_coding Interval_96805 chr2 128430815 128431523 + 0 NA intron (ENSMUSG00000074813.14, intron 2 of 2) lincRNA-intron (ENSMUSG00000074813.14, intron 2 of 2) -1844 ENSMUSG00000074813.14 ENSMUSG00000074813 ENSMUST00000223654 Morrbid lincRNA Interval_24137 chr11 30668419 30668804 + 0 NA Intergenic Intergenic -19024 ENSMUSG00000060923.5 ENSMUSG00000060923 ENSMUST00000074613 Acyp2 protein_coding Interval_103170 chr3 36221922 36223694 + 0 NA promoter-TSS (ENSMUSG00000058400.13) protein_coding-promoter-TSS (ENSMUSG00000058400.13) -533 ENSMUSG00000058400.13 ENSMUSG00000058400 ENSMUST00000197275 Qrfpr protein_coding Interval_92235 chr2 57243951 57244471 + 0 NA promoter-TSS (ENSMUSG00000026827.12) protein_coding-promoter-TSS (ENSMUSG00000026827.12) -5703 ENSMUSG00000054181.11 ENSMUSG00000054181 ENSMUST00000146529 A930012O16Rik processed_transcript Interval_5252 chr1 86918195 86918466 + 0 NA exon (ENSMUSG00000102571.1, exon 1 of 1) TEC-exon (ENSMUSG00000102571.1, exon 1 of 1) 338 ENSMUSG00000102571.1 ENSMUSG00000102571 ENSMUST00000195634 Gm37967 TEC Interval_17083 chr10 71267462 71268208 + 0 NA intron (ENSMUSG00000019927.6, intron 1 of 3) protein_coding-intron (ENSMUSG00000019927.6, intron 1 of 6) -10947 ENSMUSG00000019927.6 ENSMUSG00000019927 ENSMUST00000144231 Ube2d1 protein_coding Interval_145566 chr7 35646677 35647878 + 0 NA promoter-TSS (ENSMUSG00000030417.15) protein_coding-promoter-TSS (ENSMUSG00000030417.15) -4233 ENSMUSG00000030417.15 ENSMUSG00000030417 ENSMUST00000130340 Pdcd5 protein_coding Interval_134558 chr6 29535470 29537237 + 0 NA intron (ENSMUSG00000029771.12, intron 8 of 9) protein_coding-intron (ENSMUSG00000029771.12, intron 8 of 8) -4793 ENSMUSG00000029771.12 ENSMUSG00000029771 ENSMUST00000171527 Irf5 protein_coding Interval_34403 chr12 3887198 3887446 + 0 NA intron (ENSMUSG00000020661.15, intron 1 of 2) protein_coding-intron (ENSMUSG00000020661.15, intron 6 of 22) -25078 ENSMUSG00000073242.4 ENSMUSG00000073242 ENSMUST00000144896 Dnmt3aos antisense Interval_156501 chr8 48764753 48765430 + 0 NA intron (ENSMUSG00000031561.16, intron 1 of 2) protein_coding-intron (ENSMUSG00000031561.16, intron 1 of 2) -78631 ENSMUSG00000100706.6 ENSMUSG00000100706 ENSMUST00000188936 Gm19744 processed_transcript Interval_90673 chr2 31808139 31808655 + 0 NA exon (ENSMUSG00000043102.2, exon 2 of 2) protein_coding-exon (ENSMUSG00000043102.2, exon 2 of 2) 2183 ENSMUSG00000043102.2 ENSMUSG00000043102 ENSMUST00000057407 Qrfp protein_coding Interval_142648 chr6 144681159 144681732 + 0 NA intron (ENSMUSG00000085785.7, intron 1 of 2) antisense-intron (ENSMUSG00000085785.7, intron 1 of 2) 1743 ENSMUSG00000085785.7 ENSMUSG00000085785 ENSMUST00000154167 Sox5os3 antisense Interval_155832 chr8 39894176 39894911 + 0 NA Intergenic Intergenic -122171 ENSMUSG00000109815.1 ENSMUSG00000109815 ENSMUST00000209880 Gm7082 processed_pseudogene Interval_152787 chr7 137549986 137550451 + 0 NA Intergenic Intergenic 14370 ENSMUSG00000109973.1 ENSMUSG00000109973 ENSMUST00000209816 Gm45397 lincRNA Interval_17641 chr10 78425053 78426384 + 0 NA promoter-TSS (ENSMUSG00000005054.7) protein_coding-promoter-TSS (ENSMUSG00000005054.7) 49 ENSMUSG00000005054.7 ENSMUSG00000005054 ENSMUST00000005185 Cstb protein_coding Interval_120100 chr4 141819012 141819562 + 0 NA promoter-TSS (ENSMUSG00000058579.5) protein_coding-promoter-TSS (ENSMUSG00000058579.5) 6714 ENSMUSG00000058579.5 ENSMUSG00000058579 ENSMUST00000155826 Cela2a protein_coding Interval_146949 chr7 56144896 56145180 + 0 NA intron (ENSMUSG00000030451.16, intron 34 of 90) protein_coding-intron (ENSMUSG00000030451.16, intron 35 of 92) 72215 ENSMUSG00000108347.1 ENSMUSG00000108347 ENSMUST00000206781 Gm19187 processed_pseudogene Interval_67014 chr16 40271973 40272738 + 0 NA intron (ENSMUSG00000061080.11, intron 2 of 2) protein_coding-intron (ENSMUSG00000061080.11, intron 1 of 8) -33864 ENSMUSG00000077535.1 ENSMUSG00000077535 ENSMUST00000104347 Gm22543 snRNA Interval_139143 chr6 95969921 95970194 + 0 NA Intergenic Intergenic -43128 ENSMUSG00000107856.1 ENSMUSG00000107856 ENSMUST00000203221 Gm7838 processed_pseudogene Interval_170458 chr9 108111816 108112186 + 0 NA exon (ENSMUSG00000032589.14, exon 5 of 12) protein_coding-exon (ENSMUSG00000032589.14, exon 5 of 12) -1588 ENSMUSG00000032589.14 ENSMUSG00000032589 ENSMUST00000124763 Bsn protein_coding Interval_81286 chr18 57389963 57390430 + 0 NA TTS (ENSMUSG00000024594.9) protein_coding-TTS (ENSMUSG00000024594.9) -15219 ENSMUSG00000117864.1 ENSMUSG00000117864 ENSMUST00000238028 Gm19500 processed_transcript Interval_49517 chr13 112645639 112646198 + 0 NA intron (ENSMUSG00000021758.14, intron 2 of 21) protein_coding-intron (ENSMUSG00000021758.14, intron 2 of 20) 6557 ENSMUSG00000021758.14 ENSMUSG00000021758 ENSMUST00000099166 Ddx4 protein_coding Interval_18843 chr10 91212870 91214041 + 0 NA intron (ENSMUSG00000111544.1, intron 3 of 3) lincRNA-intron (ENSMUSG00000111544.1, intron 3 of 3) 7164 ENSMUSG00000111544.1 ENSMUSG00000111544 ENSMUST00000216451 4930534H03Rik lincRNA Interval_114081 chr4 63224793 63225027 + 0 NA exon (ENSMUSG00000045672.15, exon 3 of 61) protein_coding-exon (ENSMUSG00000045672.15, exon 3 of 61) -9376 ENSMUSG00000045672.15 ENSMUSG00000045672 ENSMUST00000151992 Col27a1 protein_coding Interval_150452 chr7 110735710 110737114 + 0 NA Intergenic Intergenic -23015 ENSMUSG00000109749.1 ENSMUSG00000109749 ENSMUST00000209719 Gm18907 processed_pseudogene Interval_170238 chr9 106393169 106393738 + 0 NA Intergenic Intergenic 18834 ENSMUSG00000053716.9 ENSMUSG00000053716 ENSMUST00000193878 Dusp7 protein_coding Interval_54098 chr14 65272435 65273339 + 0 NA intron (ENSMUSG00000034532.9, intron 2 of 8) protein_coding-intron (ENSMUSG00000034532.9, intron 2 of 6) 6150 ENSMUSG00000034532.9 ENSMUSG00000034532 ENSMUST00000226005 Fbxo16 protein_coding Interval_94697 chr2 93461999 93463290 + 0 NA promoter-TSS (ENSMUSG00000027215.13) protein_coding-promoter-TSS (ENSMUSG00000027215.13) -732 ENSMUSG00000027215.13 ENSMUSG00000027215 ENSMUST00000124804 Cd82 protein_coding Interval_62333 chr15 90249673 90250594 + 0 NA Intergenic Intergenic 25773 ENSMUSG00000099319.1 ENSMUSG00000099319 ENSMUST00000183650 Mir7648 miRNA Interval_38746 chr12 81806962 81807725 + 0 NA Intergenic Intergenic -20456 ENSMUSG00000113950.1 ENSMUSG00000113950 ENSMUST00000221799 Gm47080 lincRNA Interval_165799 chr9 53254339 53254926 + 0 NA Intergenic Intergenic -6579 ENSMUSG00000053289.8 ENSMUSG00000053289 ENSMUST00000065630 Ddx10 protein_coding Interval_15118 chr10 42669829 42670031 + 0 NA intron (ENSMUSG00000038280.12, intron 2 of 6) protein_coding-intron (ENSMUSG00000038280.12, intron 2 of 5) -9036 ENSMUSG00000038280.12 ENSMUSG00000038280 ENSMUST00000154048 Ostm1 protein_coding Interval_88814 chr2 11395694 11397039 + 0 NA intron (ENSMUSG00000102674.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000102674.1, intron 1 of 2) 2135 ENSMUSG00000102674.1 ENSMUSG00000102674 ENSMUST00000192626 8030442B05Rik lincRNA Interval_157272 chr8 68862974 68863265 + 0 NA Intergenic Intergenic -17436 ENSMUSG00000015568.16 ENSMUSG00000015568 ENSMUST00000169749 Lpl protein_coding Interval_48642 chr13 100798090 100798306 + 0 NA Intergenic Intergenic -11796 ENSMUSG00000041431.16 ENSMUSG00000041431 ENSMUST00000142056 Ccnb1 protein_coding Interval_1095 chr1 15643832 15645006 + 0 NA intron (ENSMUSG00000092083.4, intron 2 of 2) protein_coding-intron (ENSMUSG00000092083.4, intron 1 of 1) 41627 ENSMUSG00000088829.1 ENSMUSG00000088829 ENSMUST00000158204 Gm25227 snoRNA Interval_12290 chr1 191419090 191419854 + 0 NA Intergenic Intergenic 11806 ENSMUSG00000103433.1 ENSMUSG00000103433 ENSMUST00000194903 Gm2272 processed_pseudogene Interval_109075 chr3 135585193 135586846 + 0 NA intron (ENSMUSG00000028163.17, intron 11 of 11) protein_coding-intron (ENSMUSG00000028163.17, intron 24 of 24) 17840 ENSMUSG00000028163.17 ENSMUSG00000028163 ENSMUST00000196246 Nfkb1 protein_coding Interval_6377 chr1 106550598 106550803 + 0 NA intron (ENSMUSG00000057329.7, intron 1 of 1) protein_coding-intron (ENSMUSG00000057329.7, intron 1 of 1) -4069 ENSMUSG00000098344.1 ENSMUSG00000098344 ENSMUST00000183743 Mir3473f miRNA Interval_138671 chr6 91035119 91035443 + 0 NA intron (ENSMUSG00000030091.17, intron 11 of 23) protein_coding-intron (ENSMUSG00000030091.17, intron 27 of 39) 63341 ENSMUSG00000030091.17 ENSMUSG00000030091 ENSMUST00000203434 Nup210 protein_coding Interval_89275 chr2 18723772 18724003 + 0 NA intron (ENSMUSG00000037708.16, intron 3 of 3) protein_coding-intron (ENSMUSG00000037708.16, intron 4 of 10) 24803 ENSMUSG00000037708.16 ENSMUSG00000037708 ENSMUST00000173763 Spag6 protein_coding Interval_43242 chr13 26684325 26684603 + 0 NA Intergenic Intergenic -3771 ENSMUSG00000114225.1 ENSMUSG00000114225 ENSMUST00000224183 Gm47883 processed_pseudogene Interval_155376 chr8 32930547 32930916 + 0 NA intron (ENSMUSG00000079070.10, intron 1 of 2) lincRNA-intron (ENSMUSG00000079070.10, intron 2 of 3) 11751 ENSMUSG00000079070.10 ENSMUSG00000079070 ENSMUST00000180220 Gm3985 lincRNA Interval_44806 chr13 48782430 48783399 + 0 NA Intergenic Intergenic -19333 ENSMUSG00000113297.1 ENSMUSG00000113297 ENSMUST00000222192 Rpl17-ps6 processed_pseudogene Interval_61642 chr15 83111335 83111542 + 0 NA intron (ENSMUSG00000058586.12, intron 1 of 4) protein_coding-intron (ENSMUSG00000058586.12, intron 8 of 11) -5509 ENSMUSG00000090964.1 ENSMUSG00000090964 ENSMUST00000168123 Gm17206 antisense Interval_107589 chr3 108730014 108730947 + 0 NA Intergenic Intergenic 21572 ENSMUSG00000098800.1 ENSMUSG00000098800 ENSMUST00000184260 Gm27244 antisense Interval_112698 chr4 44167363 44168691 + 0 NA promoter-TSS (ENSMUSG00000035696.15) protein_coding-promoter-TSS (ENSMUSG00000035696.15) 256 ENSMUSG00000035696.15 ENSMUSG00000035696 ENSMUST00000147302 Rnf38 protein_coding Interval_154621 chr8 22098442 22099031 + 0 NA intron (ENSMUSG00000037738.11, intron 2 of 6) protein_coding-intron (ENSMUSG00000037738.11, intron 10 of 19) 9157 ENSMUSG00000037738.11 ENSMUSG00000037738 ENSMUST00000213644 Nek5 protein_coding Interval_31979 chr11 104295354 104296087 + 0 NA TTS (ENSMUSG00000018411.17) protein_coding-TTS (ENSMUSG00000018411.17) -36359 ENSMUSG00000085134.1 ENSMUSG00000085134 ENSMUST00000137561 Gm11659 antisense Interval_141104 chr6 125008022 125010091 + 0 NA promoter-TSS (ENSMUSG00000038346.18) protein_coding-promoter-TSS (ENSMUSG00000038346.18) -659 ENSMUSG00000038346.18 ENSMUSG00000038346 ENSMUST00000137325 Zfp384 protein_coding Interval_45594 chr13 56134637 56135992 + 0 NA promoter-TSS (ENSMUSG00000015937.15) protein_coding-promoter-TSS (ENSMUSG00000015937.15) 1047 ENSMUSG00000015937.15 ENSMUSG00000015937 ENSMUST00000154564 Macroh2a1 protein_coding Interval_118746 chr4 133494237 133494714 + 0 NA intron (ENSMUSG00000056596.8, intron 1 of 1) protein_coding-intron (ENSMUSG00000056596.8, intron 1 of 2) 4075 ENSMUSG00000056596.8 ENSMUSG00000056596 ENSMUST00000123169 Trnp1 protein_coding Interval_158425 chr8 83652055 83653860 + 0 NA intron (ENSMUSG00000019433.9, intron 1 of 2) protein_coding-intron (ENSMUSG00000019433.9, intron 1 of 6) 259 ENSMUSG00000019433.9 ENSMUSG00000019433 ENSMUST00000212463 Gipc1 protein_coding Interval_170014 chr9 103645547 103645977 + 0 NA intron (ENSMUSG00000042757.16, intron 2 of 3) protein_coding-intron (ENSMUSG00000042757.16, intron 1 of 4) -45598 ENSMUSG00000102441.1 ENSMUSG00000102441 ENSMUST00000195052 Gm38032 TEC Interval_153359 chr7 143907389 143908113 + 0 NA Intergenic Intergenic -25364 ENSMUSG00000099321.1 ENSMUSG00000099321 ENSMUST00000183699 Mir6404 miRNA Interval_56592 chr14 120650443 120650661 + 0 NA intron (ENSMUSG00000115648.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000115648.1, intron 1 of 1) 17590 ENSMUSG00000115648.1 ENSMUSG00000115648 ENSMUST00000226920 Gm49008 lincRNA Interval_163630 chr9 22807277 22808112 + 0 NA intron (ENSMUSG00000035919.16, intron 20 of 22) protein_coding-intron (ENSMUSG00000035919.16, intron 19 of 21) -34859 ENSMUSG00000098940.1 ENSMUSG00000098940 ENSMUST00000184937 Gm27639 snRNA Interval_47444 chr13 84290781 84291097 + 0 NA intron (ENSMUSG00000035762.11, intron 8 of 10) protein_coding-intron (ENSMUSG00000035762.11, intron 9 of 11) -9123 ENSMUSG00000114827.1 ENSMUSG00000114827 ENSMUST00000225916 Gm46432 processed_pseudogene Interval_24255 chr11 31818242 31818454 + 0 NA exon (ENSMUSG00000085772.7, exon 4 of 4) lincRNA-exon (ENSMUSG00000085772.7, exon 4 of 4) 6176 ENSMUSG00000085772.7 ENSMUSG00000085772 ENSMUST00000126265 D630024D03Rik lincRNA Interval_51070 chr14 21982640 21983004 + 0 NA Intergenic Intergenic 6779 ENSMUSG00000039081.10 ENSMUSG00000039081 ENSMUST00000043409 Zfp503 protein_coding Interval_146369 chr7 45560310 45561684 + 0 NA intron (ENSMUSG00000030825.19, intron 1 of 2) protein_coding-intron (ENSMUSG00000030825.19, intron 5 of 8) 1791 ENSMUSG00000030825.19 ENSMUSG00000030825 ENSMUST00000209551 Hsd17b14 protein_coding Interval_38702 chr12 81183903 81184662 + 0 NA intron (ENSMUSG00000021136.13, intron 12 of 12) protein_coding-intron (ENSMUSG00000021136.13, intron 12 of 12) 18131 ENSMUSG00000092673.1 ENSMUSG00000092673 ENSMUST00000174932 Mir3067 miRNA Interval_67720 chr16 56256162 56256476 + 0 NA intron (ENSMUSG00000035270.15, intron 12 of 19) protein_coding-intron (ENSMUSG00000035270.15, intron 12 of 19) 52006 ENSMUSG00000035270.15 ENSMUSG00000035270 ENSMUST00000159842 Impg2 protein_coding Interval_40966 chr12 110304628 110305012 + 0 NA Intergenic Intergenic -11170 ENSMUSG00000113198.1 ENSMUSG00000113198 ENSMUST00000222676 Gm6988 processed_pseudogene Interval_159802 chr8 103801764 103802540 + 0 NA Intergenic Intergenic 198353 ENSMUSG00000110336.1 ENSMUSG00000110336 ENSMUST00000211119 4933400L20Rik lincRNA Interval_122851 chr5 26070306 26071522 + 0 NA exon (ENSMUSG00000105422.1, exon 1 of 1) processed_pseudogene-exon (ENSMUSG00000105422.1, exon 1 of 1) 377 ENSMUSG00000105422.1 ENSMUSG00000105422 ENSMUST00000197666 Gm6089 processed_pseudogene Interval_164799 chr9 41988733 41988934 + 0 NA intron (ENSMUSG00000049313.8, intron 36 of 47) protein_coding-intron (ENSMUSG00000049313.8, intron 36 of 47) -4263 ENSMUSG00000049313.8 ENSMUSG00000049313 ENSMUST00000139133 Sorl1 protein_coding Interval_101318 chr2 180410774 180411496 + 0 NA Intergenic Intergenic 12756 ENSMUSG00000065460.1 ENSMUSG00000065460 ENSMUST00000083526 Mir133a-2 miRNA Interval_93652 chr2 75621821 75622497 + 0 NA Intergenic Intergenic 11223 ENSMUSG00000082152.1 ENSMUSG00000082152 ENSMUST00000119695 Gm13655 processed_pseudogene Interval_47579 chr13 89426132 89426351 + 0 NA Intergenic Intergenic 152178 ENSMUSG00000094463.2 ENSMUSG00000094463 ENSMUST00000178288 Gm8546 processed_pseudogene Interval_150802 chr7 114768825 114769413 + 0 NA exon (ENSMUSG00000048782.15, exon 2 of 2) protein_coding-exon (ENSMUSG00000048782.15, exon 2 of 2) -24849 ENSMUSG00000048782.15 ENSMUSG00000048782 ENSMUST00000206274 Insc protein_coding Interval_20373 chr10 117165083 117165574 + 0 NA Intergenic Intergenic -12304 ENSMUSG00000112753.1 ENSMUSG00000112753 ENSMUST00000219785 4930423D24Rik lincRNA Interval_12728 chr10 4526487 4527107 + 0 NA intron (ENSMUSG00000019767.12, intron 5 of 10) protein_coding-intron (ENSMUSG00000019767.12, intron 5 of 10) -6198 ENSMUSG00000019767.12 ENSMUSG00000019767 ENSMUST00000157064 Ccdc170 protein_coding Interval_116642 chr4 116265520 116266408 + 0 NA intron (ENSMUSG00000111410.1, intron 3 of 9) protein_coding-intron (ENSMUSG00000028698.13, intron 3 of 9) 44346 ENSMUSG00000028698.13 ENSMUSG00000028698 ENSMUST00000106490 Pik3r3 protein_coding Interval_72685 chr17 31544885 31545544 + 0 NA Intergenic Intergenic 7043 ENSMUSG00000117818.1 ENSMUSG00000117818 ENSMUST00000235158 Gm50105 lincRNA Interval_75123 chr17 63683424 63683694 + 0 NA Intergenic Intergenic 18931 ENSMUSG00000117014.1 ENSMUSG00000117014 ENSMUST00000233403 Gm9300 processed_pseudogene Interval_50455 chr14 13621459 13621745 + 0 NA Intergenic Intergenic -49274 ENSMUSG00000044772.2 ENSMUSG00000044772 ENSMUST00000061045 Sntn protein_coding Interval_112972 chr4 46534349 46536493 + 0 NA promoter-TSS (ENSMUSG00000085990.1) processed_transcript-promoter-TSS (ENSMUSG00000085990.1) -480 ENSMUSG00000085990.1 ENSMUSG00000085990 ENSMUST00000132432 Gm16731 processed_transcript Interval_160754 chr8 111960525 111961898 + 0 NA Intergenic Intergenic 20143 ENSMUSG00000031950.7 ENSMUSG00000031950 ENSMUST00000133628 Gabarapl2 protein_coding Interval_73001 chr17 34079680 34079975 + 0 NA Intergenic Intergenic -3660 ENSMUSG00000092383.2 ENSMUSG00000092383 ENSMUST00000172731 H2-Pb unprocessed_pseudogene Interval_88403 chr2 4827440 4827665 + 0 NA Intergenic Intergenic 7060 ENSMUSG00000083407.1 ENSMUSG00000083407 ENSMUST00000117910 Gm13176 processed_pseudogene Interval_120021 chr4 141404655 141405124 + 0 NA intron (ENSMUSG00000006216.10, intron 1 of 2) protein_coding-intron (ENSMUSG00000006216.10, intron 18 of 19) 6032 ENSMUSG00000086061.7 ENSMUSG00000086061 ENSMUST00000149247 Gm13075 antisense Interval_2887 chr1 47833928 47834398 + 0 NA Intergenic Intergenic 81652 ENSMUSG00000101996.1 ENSMUSG00000101996 ENSMUST00000186401 Gm19206 processed_pseudogene Interval_42733 chr13 18698658 18698911 + 0 NA Intergenic Intergenic -53435 ENSMUSG00000114118.1 ENSMUSG00000114118 ENSMUST00000221183 Gm48829 lincRNA Interval_91578 chr2 43786895 43787471 + 0 NA intron (ENSMUSG00000049744.15, intron 2 of 5) protein_coding-intron (ENSMUSG00000049744.15, intron 2 of 13) 38314 ENSMUSG00000049744.15 ENSMUSG00000049744 ENSMUST00000128630 Arhgap15 protein_coding Interval_104059 chr3 57815176 57815935 + 0 NA intron (ENSMUSG00000036503.13, intron 7 of 9) protein_coding-intron (ENSMUSG00000036503.13, intron 7 of 9) -5298 ENSMUSG00000106006.1 ENSMUSG00000106006 ENSMUST00000198536 Gm17951 processed_pseudogene Interval_17924 chr10 80854538 80855976 + 0 NA promoter-TSS (ENSMUSG00000035206.10) protein_coding-promoter-TSS (ENSMUSG00000035206.10) -114 ENSMUSG00000035215.9 ENSMUSG00000035215 ENSMUST00000218931 Lsm7 protein_coding Interval_37483 chr12 69284790 69285544 + 0 NA TTS (ENSMUSG00000051890.13) protein_coding-TTS (ENSMUSG00000051890.13) -11735 ENSMUSG00000085539.1 ENSMUSG00000085539 ENSMUST00000124326 Gm15561 antisense Interval_15760 chr10 56219851 56220351 + 0 NA intron (ENSMUSG00000038122.9, intron 2 of 29) protein_coding-intron (ENSMUSG00000038122.9, intron 2 of 32) 8588 ENSMUSG00000038122.9 ENSMUSG00000038122 ENSMUST00000217792 Tbc1d32 protein_coding Interval_3994 chr1 65779903 65780283 + 0 NA Intergenic Intergenic -146445 ENSMUSG00000025945.11 ENSMUSG00000025945 ENSMUST00000114027 Crygf protein_coding Interval_113096 chr4 48132458 48133607 + 0 NA intron (ENSMUSG00000061455.13, intron 2 of 10) protein_coding-intron (ENSMUSG00000061455.13, intron 3 of 8) 8109 ENSMUSG00000061455.13 ENSMUSG00000061455 ENSMUST00000064765 Stx17 protein_coding Interval_106141 chr3 93608942 93609576 + 0 NA Intergenic Intergenic 20493 ENSMUSG00000103406.1 ENSMUSG00000103406 ENSMUST00000193248 Gm5541 unprocessed_pseudogene Interval_157357 chr8 69843947 69845145 + 0 NA intron (ENSMUSG00000031860.17, intron 1 of 6) protein_coding-intron (ENSMUSG00000031860.17, intron 1 of 7) 11909 ENSMUSG00000031860.17 ENSMUSG00000031860 ENSMUST00000135952 Pbx4 protein_coding Interval_100591 chr2 170302829 170303331 + 0 NA Intergenic Intergenic 18045 ENSMUSG00000084013.1 ENSMUSG00000084013 ENSMUST00000118388 Gm14270 processed_pseudogene Interval_140814 chr6 121539514 121540257 + 0 NA Intergenic Intergenic 1689 ENSMUSG00000107923.1 ENSMUSG00000107923 ENSMUST00000205071 Gm43922 processed_pseudogene Interval_146854 chr7 53473276 53473932 + 0 NA Intergenic Intergenic 418285 ENSMUSG00000099176.1 ENSMUSG00000099176 ENSMUST00000184140 Mir6238 miRNA Interval_73354 chr17 36532831 36533095 + 0 NA Intergenic Intergenic -1318 ENSMUSG00000092296.1 ENSMUSG00000092296 ENSMUST00000172713 Gm20454 unprocessed_pseudogene Interval_63480 chr15 101339444 101339951 + 0 NA intron (ENSMUSG00000116114.1, intron 1 of 4) antisense-intron (ENSMUSG00000116114.1, intron 1 of 4) 23595 ENSMUSG00000116395.1 ENSMUSG00000116395 ENSMUST00000229927 Gm49499 TEC Interval_55923 chr14 102510304 102510669 + 0 NA Intergenic Intergenic 73463 ENSMUSG00000115696.1 ENSMUSG00000115696 ENSMUST00000228104 Gm49292 lincRNA Interval_77131 chr17 86768363 86769021 + 0 NA intron (ENSMUSG00000024140.10, intron 1 of 15) protein_coding-intron (ENSMUSG00000024140.10, intron 1 of 15) -4578 ENSMUSG00000117538.1 ENSMUSG00000117538 ENSMUST00000234482 Gm50008 TEC Interval_95787 chr2 116242410 116244434 + 0 NA Intergenic Intergenic -167326 ENSMUSG00000103562.1 ENSMUSG00000103562 ENSMUST00000195368 2810405F15Rik TEC Interval_27746 chr11 69764863 69766830 + 0 NA promoter-TSS (ENSMUSG00000018750.14) protein_coding-promoter-TSS (ENSMUSG00000018750.14) -170 ENSMUSG00000018750.14 ENSMUSG00000018750 ENSMUST00000108638 Zbtb4 protein_coding Interval_45476 chr13 55337309 55339804 + 0 NA Intergenic Intergenic -8733 ENSMUSG00000021485.14 ENSMUSG00000021485 ENSMUST00000141644 Mxd3 protein_coding Interval_164793 chr9 41934734 41936475 + 0 NA Intergenic Intergenic -45000 ENSMUSG00000111726.1 ENSMUSG00000111726 ENSMUST00000217258 Gm40513 lincRNA Interval_148376 chr7 80860337 80861398 + 0 NA promoter-TSS (ENSMUSG00000038797.13) protein_coding-promoter-TSS (ENSMUSG00000038797.13) -84 ENSMUSG00000038797.13 ENSMUSG00000038797 ENSMUST00000155128 Zscan2 protein_coding Interval_140683 chr6 120541649 120542248 + 0 NA Intergenic Intergenic -10646 ENSMUSG00000058979.7 ENSMUSG00000058979 ENSMUST00000204390 Hdhd5 protein_coding Interval_71705 chr17 25578812 25579946 + 0 NA promoter-TSS (ENSMUSG00000002279.19) protein_coding-promoter-TSS (ENSMUSG00000002279.19) 59 ENSMUSG00000002279.19 ENSMUSG00000002279 ENSMUST00000156868 Lmf1 protein_coding Interval_118866 chr4 134159887 134161287 + 0 NA intron (ENSMUSG00000037443.13, intron 3 of 13) protein_coding-intron (ENSMUSG00000037443.13, intron 3 of 13) -3666 ENSMUSG00000037443.13 ENSMUSG00000037443 ENSMUST00000132120 Cep85 protein_coding Interval_149638 chr7 100262219 100262597 + 0 NA intron (ENSMUSG00000030729.17, intron 7 of 13) protein_coding-intron (ENSMUSG00000030729.17, intron 8 of 14) -2267 ENSMUSG00000089987.2 ENSMUSG00000089987 ENSMUST00000160622 Gpx2-ps1 processed_pseudogene Interval_2256 chr1 37419047 37419965 + 0 NA exon (ENSMUSG00000026112.7, exon 3 of 3) protein_coding-exon (ENSMUSG00000026112.7, exon 3 of 3) 10494 ENSMUSG00000026112.7 ENSMUSG00000026112 ENSMUST00000192179 Coa5 protein_coding Interval_162660 chr9 7594912 7595933 + 0 NA Intergenic Intergenic -4072 ENSMUSG00000111764.1 ENSMUSG00000111764 ENSMUST00000214781 Gm47616 processed_pseudogene Interval_115950 chr4 106529120 106530415 + 0 NA intron (ENSMUSG00000118551.1, intron 1 of 4) processed_transcript-intron (ENSMUSG00000118551.1, intron 1 of 4) 10779 ENSMUSG00000085933.3 ENSMUSG00000085933 ENSMUST00000239122 Tmem61 protein_coding Interval_8851 chr1 151543733 151546113 + 0 NA Intergenic Intergenic 6020 ENSMUSG00000100357.1 ENSMUSG00000100357 ENSMUST00000191460 Gm28181 lincRNA Interval_48455 chr13 99150668 99151023 + 0 NA Intergenic Intergenic -33978 ENSMUSG00000050919.9 ENSMUSG00000050919 ENSMUST00000056558 Zfp366 protein_coding Interval_57716 chr15 16532408 16532778 + 0 NA intron (ENSMUSG00000115485.1, intron 2 of 3) lincRNA-intron (ENSMUSG00000115485.1, intron 2 of 3) 35682 ENSMUSG00000115485.1 ENSMUSG00000115485 ENSMUST00000227245 Gm49126 lincRNA Interval_21617 chr11 3257163 3257442 + 0 NA TTS (ENSMUSG00000020457.13) protein_coding-TTS (ENSMUSG00000020457.13) 9090 ENSMUSG00000020457.13 ENSMUSG00000020457 ENSMUST00000132159 Drg1 protein_coding Interval_25127 chr11 44368551 44368850 + 0 NA Intergenic Intergenic 18574 ENSMUSG00000082790.1 ENSMUSG00000082790 ENSMUST00000121267 Gm12155 processed_pseudogene Interval_162423 chr8 128537673 128539107 + 0 NA Intergenic Intergenic -95546 ENSMUSG00000110562.1 ENSMUSG00000110562 ENSMUST00000212641 Gm9204 processed_pseudogene Interval_137758 chr6 82160037 82162095 + 0 NA Intergenic Intergenic -81108 ENSMUSG00000108224.1 ENSMUSG00000108224 ENSMUST00000204563 Gm31861 processed_pseudogene Interval_94996 chr2 102815296 102816577 + 0 NA intron (ENSMUSG00000005087.17, intron 15 of 15) protein_coding-intron (ENSMUSG00000005087.17, intron 18 of 18) 54763 ENSMUSG00000005089.15 ENSMUSG00000005089 ENSMUST00000154446 Slc1a2 protein_coding Interval_153783 chr8 8547682 8547948 + 0 NA Intergenic Intergenic -28707 ENSMUSG00000108932.1 ENSMUSG00000108932 ENSMUST00000208799 Gm31463 lincRNA Interval_40464 chr12 105032016 105033190 + 0 NA promoter-TSS (ENSMUSG00000021102.4) protein_coding-promoter-TSS (ENSMUSG00000021102.4) -85 ENSMUSG00000021102.4 ENSMUSG00000021102 ENSMUST00000220494 Glrx5 protein_coding Interval_83149 chr18 82229336 82229601 + 0 NA Intergenic Intergenic 29042 ENSMUSG00000117913.1 ENSMUSG00000117913 ENSMUST00000237813 Gm50294 lincRNA Interval_71753 chr17 25874268 25875993 + 0 NA promoter-TSS (ENSMUSG00000025731.16) protein_coding-promoter-TSS (ENSMUSG00000025731.16) -370 ENSMUSG00000025731.16 ENSMUSG00000025731 ENSMUST00000169085 Mettl26 protein_coding Interval_66112 chr16 31700063 31700417 + 0 NA intron (ENSMUSG00000022770.17, intron 1 of 2) protein_coding-intron (ENSMUSG00000022770.17, intron 4 of 24) 15974 ENSMUSG00000022770.17 ENSMUSG00000022770 ENSMUST00000140258 Dlg1 protein_coding Interval_33337 chr11 115999412 116000949 + 0 NA intron (ENSMUSG00000020758.15, intron 28 of 39) protein_coding-intron (ENSMUSG00000020758.15, intron 29 of 40) 12539 ENSMUSG00000020766.4 ENSMUSG00000020766 ENSMUST00000021114 Galk1 protein_coding Interval_1272 chr1 18845610 18846738 + 0 NA Intergenic Intergenic 123659 ENSMUSG00000088800.1 ENSMUSG00000088800 ENSMUST00000158175 Gm24075 snoRNA Interval_121175 chr4 153802526 153802735 + 0 NA Intergenic Intergenic -73754 ENSMUSG00000077519.1 ENSMUSG00000077519 ENSMUST00000104331 Gm25880 snoRNA Interval_152816 chr7 138282855 138283496 + 0 NA intron (ENSMUSG00000091002.2, intron 4 of 6) protein_coding-intron (ENSMUSG00000091002.2, intron 4 of 11) 114555 ENSMUSG00000091002.2 ENSMUSG00000091002 ENSMUST00000162222 Tcerg1l protein_coding Interval_45198 chr13 53153326 53154443 + 0 NA intron (ENSMUSG00000021464.14, intron 1 of 8) protein_coding-intron (ENSMUSG00000021464.14, intron 1 of 8) 121774 ENSMUSG00000021464.14 ENSMUSG00000021464 ENSMUST00000149299 Ror2 protein_coding Interval_19347 chr10 97369498 97370063 + 0 NA Intergenic Intergenic -53698 ENSMUSG00000105557.1 ENSMUSG00000105557 ENSMUST00000198473 Mir3966 miRNA Interval_115857 chr4 105257012 105258262 + 0 NA Intergenic Intergenic 100290 ENSMUSG00000028517.8 ENSMUSG00000028517 ENSMUST00000064139 Plpp3 protein_coding Interval_124624 chr5 52524176 52524626 + 0 NA Intergenic Intergenic -14430 ENSMUSG00000104829.1 ENSMUSG00000104829 ENSMUST00000198876 Gm43685 antisense Interval_117207 chr4 120581369 120582354 + 0 NA Intergenic Intergenic -6885 ENSMUSG00000091297.2 ENSMUSG00000091297 ENSMUST00000238451 Gm8439 protein_coding Interval_8967 chr1 152800046 152800501 + 0 NA promoter-TSS (ENSMUSG00000026480.12) protein_coding-promoter-TSS (ENSMUSG00000026480.12) -7564 ENSMUSG00000026480.12 ENSMUSG00000026480 ENSMUST00000187235 Ncf2 protein_coding Interval_68574 chr16 78969115 78969784 + 0 NA intron (ENSMUSG00000022857.13, intron 21 of 26) protein_coding-intron (ENSMUSG00000022857.13, intron 22 of 27) 5353 ENSMUSG00000085094.2 ENSMUSG00000085094 ENSMUST00000152173 Gm15692 processed_pseudogene Interval_152035 chr7 128460392 128462648 + 0 NA promoter-TSS (ENSMUSG00000030846.15) protein_coding-promoter-TSS (ENSMUSG00000030846.15) -311 ENSMUSG00000030846.15 ENSMUSG00000030846 ENSMUST00000136782 Tial1 protein_coding Interval_132907 chr5 148673992 148674247 + 0 NA Intergenic Intergenic -37347 ENSMUSG00000106733.1 ENSMUSG00000106733 ENSMUST00000200820 Gm36186 lincRNA Interval_148320 chr7 80490493 80491720 + 0 NA intron (ENSMUSG00000030528.12, intron 11 of 14) protein_coding-intron (ENSMUSG00000030528.12, intron 12 of 21) -16681 ENSMUSG00000091989.1 ENSMUSG00000091989 ENSMUST00000166096 Ndufab1-ps processed_pseudogene Interval_139291 chr6 97958409 97958804 + 0 NA intron (ENSMUSG00000035158.15, intron 2 of 9) protein_coding-intron (ENSMUSG00000035158.15, intron 2 of 9) -33315 ENSMUSG00000035158.15 ENSMUSG00000035158 ENSMUST00000203938 Mitf protein_coding Interval_37639 chr12 70710850 70714244 + 0 NA Intergenic Intergenic -30697 ENSMUSG00000112950.1 ENSMUSG00000112950 ENSMUST00000222630 Gm32369 lincRNA Interval_78847 chr18 20949949 20950318 + 0 NA intron (ENSMUSG00000033107.6, intron 1 of 5) protein_coding-intron (ENSMUSG00000033107.6, intron 1 of 5) -11339 ENSMUSG00000033107.6 ENSMUSG00000033107 ENSMUST00000234316 Rnf125 protein_coding Interval_133155 chr5 150232288 150233636 + 0 NA intron (ENSMUSG00000056602.12, intron 1 of 3) protein_coding-intron (ENSMUSG00000056602.12, intron 2 of 4) -10901 ENSMUSG00000107082.1 ENSMUSG00000107082 ENSMUST00000201709 Gm36378 processed_pseudogene Interval_163901 chr9 28050719 28050931 + 0 NA intron (ENSMUSG00000062257.13, intron 1 of 7) protein_coding-intron (ENSMUSG00000062257.13, intron 1 of 7) -147115 ENSMUSG00000087531.7 ENSMUSG00000087531 ENSMUST00000139851 Gm15606 sense_intronic Interval_165096 chr9 44551287 44552694 + 0 NA intron (ENSMUSG00000047880.15, intron 2 of 3) protein_coding-intron (ENSMUSG00000047880.15, intron 1 of 2) -25408 ENSMUSG00000047880.15 ENSMUSG00000047880 ENSMUST00000213357 Cxcr5 protein_coding Interval_72994 chr17 34027419 34028225 + 0 NA promoter-TSS (ENSMUSG00000073422.11) protein_coding-promoter-TSS (ENSMUSG00000073422.11) 232 ENSMUSG00000073422.11 ENSMUSG00000073422 ENSMUST00000236164 H2-Ke6 protein_coding Interval_15195 chr10 43280758 43281143 + 0 NA intron (ENSMUSG00000038240.13, intron 1 of 7) protein_coding-intron (ENSMUSG00000038240.13, intron 1 of 7) -38410 ENSMUSG00000089673.1 ENSMUSG00000089673 ENSMUST00000159442 Gm16546 processed_pseudogene Interval_48676 chr13 101063982 101064310 + 0 NA Intergenic Intergenic -24900 ENSMUSG00000096722.2 ENSMUSG00000096722 ENSMUST00000179479 Hmgb1-ps9 processed_pseudogene Interval_61935 chr15 85342251 85342648 + 0 NA intron (ENSMUSG00000016541.10, intron 1 of 11) protein_coding-intron (ENSMUSG00000016541.10, intron 1 of 11) 6204 ENSMUSG00000016541.10 ENSMUSG00000016541 ENSMUST00000163242 Atxn10 protein_coding Interval_155246 chr8 28747532 28747848 + 0 NA intron (ENSMUSG00000063626.6, intron 7 of 16) protein_coding-intron (ENSMUSG00000063626.6, intron 7 of 17) 154158 ENSMUSG00000097776.1 ENSMUSG00000097776 ENSMUST00000181267 Gm26795 lincRNA Interval_172870 chrX 52453451 52453813 + 0 NA intron (ENSMUSG00000055653.13, intron 2 of 4) protein_coding-intron (ENSMUSG00000055653.13, intron 2 of 7) -31117 ENSMUSG00000076214.1 ENSMUSG00000076214 ENSMUST00000102259 Mir717 miRNA Interval_69259 chr16 91740402 91741514 + 0 NA intron (ENSMUSG00000022957.20, intron 1 of 5) protein_coding-intron (ENSMUSG00000022957.20, intron 1 of 28) -12361 ENSMUSG00000058240.14 ENSMUSG00000058240 ENSMUST00000123751 Cryzl1 protein_coding Interval_87265 chr19 47285518 47287790 + 0 NA exon (ENSMUSG00000053617.12, exon 9 of 15) protein_coding-exon (ENSMUSG00000053617.12, exon 9 of 15) -13065 ENSMUSG00000098786.1 ENSMUSG00000098786 ENSMUST00000183658 Mir6995 miRNA Interval_7892 chr1 134414907 134415964 + 0 NA promoter-TSS (ENSMUSG00000026457.14) protein_coding-promoter-TSS (ENSMUSG00000026457.14) -36 ENSMUSG00000026457.14 ENSMUSG00000026457 ENSMUST00000148822 Adipor1 protein_coding Interval_126281 chr5 86038597 86040478 + 0 NA intron (ENSMUSG00000029253.12, intron 7 of 18) protein_coding-intron (ENSMUSG00000029253.12, intron 7 of 18) 26014 ENSMUSG00000029253.12 ENSMUSG00000029253 ENSMUST00000199141 Cenpc1 protein_coding Interval_141541 chr6 129043302 129044180 + 0 NA Intergenic Intergenic 3300 ENSMUSG00000107867.1 ENSMUSG00000107867 ENSMUST00000204358 Gm43992 TEC Interval_112023 chr4 33300635 33301733 + 0 NA Intergenic Intergenic 8953 ENSMUSG00000086127.1 ENSMUSG00000086127 ENSMUST00000132553 Gm11934 processed_transcript Interval_137280 chr6 71012586 71013492 + 0 NA Intergenic Intergenic 26694 ENSMUSG00000077369.1 ENSMUSG00000077369 ENSMUST00000104181 Gm23485 snRNA Interval_109720 chr3 146286476 146287343 + 0 NA TTS (ENSMUSG00000036832.5) protein_coding-TTS (ENSMUSG00000036832.5) -37511 ENSMUSG00000105209.1 ENSMUSG00000105209 ENSMUST00000197740 Gm43334 TEC Interval_67624 chr16 53653759 53655245 + 0 NA Intergenic Intergenic -34435 ENSMUSG00000116629.1 ENSMUSG00000116629 ENSMUST00000231266 Gm49638 processed_pseudogene Interval_135549 chr6 40341681 40342123 + 0 NA intron (ENSMUSG00000029916.11, intron 2 of 2) protein_coding-intron (ENSMUSG00000029916.11, intron 2 of 15) 16394 ENSMUSG00000029916.11 ENSMUSG00000029916 ENSMUST00000201751 Agk protein_coding Interval_28586 chr11 76995394 76995943 + 0 NA Intergenic Intergenic 14205 ENSMUSG00000087398.1 ENSMUSG00000087398 ENSMUST00000138817 Gm12343 antisense Interval_21036 chr10 124748322 124748550 + 0 NA Intergenic Intergenic 97045 ENSMUSG00000112130.1 ENSMUSG00000112130 ENSMUST00000217909 Gm47839 lincRNA Interval_56562 chr14 120353222 120353468 + 0 NA intron (ENSMUSG00000022139.17, intron 2 of 2) protein_coding-intron (ENSMUSG00000022139.17, intron 2 of 8) -25896 ENSMUSG00000022139.17 ENSMUSG00000022139 ENSMUST00000227153 Mbnl2 protein_coding Interval_29783 chr11 86756274 86758602 + 0 NA promoter-TSS (ENSMUSG00000047126.17) protein_coding-promoter-TSS (ENSMUSG00000047126.17) -30955 ENSMUSG00000047126.17 ENSMUSG00000047126 ENSMUST00000133501 Cltc protein_coding Interval_70993 chr17 17038867 17039057 + 0 NA Intergenic Intergenic -25151 ENSMUSG00000096696.1 ENSMUSG00000096696 ENSMUST00000127027 Zfp960 protein_coding Interval_58448 chr15 34600001 34601064 + 0 NA intron (ENSMUSG00000038879.8, intron 4 of 4) protein_coding-intron (ENSMUSG00000038879.8, intron 5 of 10) -17761 ENSMUSG00000038879.8 ENSMUSG00000038879 ENSMUST00000227126 Nipal2 protein_coding Interval_86539 chr19 41581334 41582301 + 0 NA promoter-TSS (ENSMUSG00000025019.17) protein_coding-promoter-TSS (ENSMUSG00000025019.17) 5950 ENSMUSG00000025019.17 ENSMUSG00000025019 ENSMUST00000172371 Lcor protein_coding Interval_7405 chr1 131096491 131098094 + 0 NA exon (ENSMUSG00000016528.10, exon 1 of 10) protein_coding-exon (ENSMUSG00000016528.10, exon 1 of 10) -5143 ENSMUSG00000102856.1 ENSMUSG00000102856 ENSMUST00000191688 Gm37084 TEC Interval_118217 chr4 129577063 129577564 + 0 NA intron (ENSMUSG00000050493.8, intron 1 of 1) protein_coding-intron (ENSMUSG00000050493.8, intron 1 of 1) 144 ENSMUSG00000050493.8 ENSMUSG00000050493 ENSMUST00000052835 Fam167b protein_coding Interval_40675 chr12 106906606 106906912 + 0 NA Intergenic Intergenic -19833 ENSMUSG00000083861.1 ENSMUSG00000083861 ENSMUST00000117473 Gm9599 processed_pseudogene Interval_101021 chr2 174287537 174289404 + 0 NA intron (ENSMUSG00000086537.7, intron 1 of 4) protein_coding-intron (ENSMUSG00000027523.20, intron 2 of 3) 1862 ENSMUSG00000099106.1 ENSMUSG00000099106 ENSMUST00000184715 Gm27899 misc_RNA Interval_150170 chr7 107569114 107569359 + 0 NA intron (ENSMUSG00000051041.8, intron 1 of 3) protein_coding-intron (ENSMUSG00000051041.8, intron 1 of 2) 1470 ENSMUSG00000051041.8 ENSMUSG00000051041 ENSMUST00000239087 Olfml1 protein_coding Interval_131721 chr5 139494176 139495537 + 0 NA Intergenic Intergenic -10392 ENSMUSG00000053581.13 ENSMUSG00000053581 ENSMUST00000143889 Zfand2a protein_coding Interval_22427 chr11 9982767 9983881 + 0 NA Intergenic Intergenic -245703 ENSMUSG00000081629.1 ENSMUSG00000081629 ENSMUST00000117907 Eif3s6-ps1 processed_pseudogene Interval_96070 chr2 119587417 119588131 + 0 NA TTS (ENSMUSG00000014077.13) protein_coding-TTS (ENSMUSG00000014077.13) -6529 ENSMUSG00000085438.1 ENSMUSG00000085438 ENSMUST00000153581 Oip5os1 lincRNA Interval_132415 chr5 144793483 144795321 + 0 NA TTS (ENSMUSG00000045482.16) protein_coding-TTS (ENSMUSG00000045482.16) 19977 ENSMUSG00000088685.1 ENSMUSG00000088685 ENSMUST00000158060 Gm23995 snoRNA Interval_62327 chr15 90223707 90225469 + 0 NA TTS (ENSMUSG00000099319.1) miRNA-TTS (ENSMUSG00000099319.1) 228 ENSMUSG00000099319.1 ENSMUSG00000099319 ENSMUST00000183650 Mir7648 miRNA Interval_132871 chr5 148420499 148420887 + 0 NA Intergenic Intergenic -20902 ENSMUSG00000041313.14 ENSMUSG00000041313 ENSMUST00000201348 Slc7a1 protein_coding Interval_56539 chr14 120154362 120156305 + 0 NA intron (ENSMUSG00000115146.1, intron 2 of 8) lincRNA-intron (ENSMUSG00000115146.1, intron 2 of 8) -13704 ENSMUSG00000115146.1 ENSMUSG00000115146 ENSMUST00000226598 Gm4681 lincRNA Interval_17686 chr10 79502571 79502960 + 0 NA Intergenic Intergenic 28325 ENSMUSG00000098414.1 ENSMUSG00000098414 ENSMUST00000184212 Mir6909 miRNA Interval_90008 chr2 27280813 27281806 + 0 NA intron (ENSMUSG00000009621.18, intron 18 of 29) protein_coding-intron (ENSMUSG00000009621.18, intron 17 of 27) -45395 ENSMUSG00000086669.1 ENSMUSG00000086669 ENSMUST00000156020 AA645442 antisense Interval_85055 chr19 21856335 21857862 + 0 NA exon (ENSMUSG00000024754.13, exon 24 of 24) protein_coding-exon (ENSMUSG00000024754.13, exon 24 of 24) -23342 ENSMUSG00000118021.1 ENSMUSG00000118021 ENSMUST00000237423 Gm50130 antisense Interval_98432 chr2 152315080 152315486 + 0 NA Intergenic Intergenic 8215 ENSMUSG00000027466.15 ENSMUSG00000027466 ENSMUST00000129590 Rbck1 protein_coding Interval_149996 chr7 104352750 104354146 + 0 NA promoter-TSS (ENSMUSG00000057143.15) protein_coding-promoter-TSS (ENSMUSG00000057143.15) -110 ENSMUSG00000057143.15 ENSMUSG00000057143 ENSMUST00000130139 Trim12c protein_coding Interval_30240 chr11 91571416 91571794 + 0 NA Intergenic Intergenic 5953 ENSMUSG00000046755.5 ENSMUSG00000046755 ENSMUST00000061019 Kif2b protein_coding Interval_116349 chr4 110087695 110088391 + 0 NA Intergenic Intergenic 109990 ENSMUSG00000047143.3 ENSMUSG00000047143 ENSMUST00000061187 Dmrta2 protein_coding Interval_5310 chr1 87447275 87447946 + 0 NA intron (ENSMUSG00000048000.15, intron 8 of 8) protein_coding-intron (ENSMUSG00000048000.15, intron 28 of 28) -24929 ENSMUSG00000026258.5 ENSMUSG00000026258 ENSMUST00000191095 Snorc protein_coding Interval_119972 chr4 141172165 141172513 + 0 NA intron (ENSMUSG00000028920.9, intron 3 of 9) protein_coding-intron (ENSMUSG00000028920.9, intron 3 of 9) 24417 ENSMUSG00000028920.9 ENSMUSG00000028920 ENSMUST00000146768 Fbxo42 protein_coding Interval_130158 chr5 124608282 124608547 + 0 NA intron (ENSMUSG00000029386.15, intron 6 of 17) protein_coding-intron (ENSMUSG00000029386.15, intron 6 of 18) 9665 ENSMUSG00000029386.15 ENSMUSG00000029386 ENSMUST00000130912 Tctn2 protein_coding Interval_63579 chr15 102160491 102162006 + 0 NA intron (ENSMUSG00000023045.13, intron 10 of 12) protein_coding-intron (ENSMUSG00000023045.13, intron 12 of 14) 10132 ENSMUSG00000023045.13 ENSMUSG00000023045 ENSMUST00000160465 Soat2 protein_coding Interval_60048 chr15 64226322 64227253 + 0 NA intron (ENSMUSG00000022377.16, intron 2 of 4) protein_coding-intron (ENSMUSG00000022377.16, intron 3 of 30) -87710 ENSMUSG00000115752.1 ENSMUSG00000115752 ENSMUST00000226773 1700010G06Rik antisense Interval_72353 chr17 29371031 29371601 + 0 NA intron (ENSMUSG00000024013.15, intron 6 of 12) protein_coding-intron (ENSMUSG00000024013.15, intron 9 of 15) -2035 ENSMUSG00000024013.15 ENSMUSG00000024013 ENSMUST00000144616 Fgd2 protein_coding Interval_29872 chr11 87445188 87445613 + 0 NA promoter-TSS (ENSMUSG00000088184.1) snRNA-promoter-TSS (ENSMUSG00000088184.1) -820 ENSMUSG00000088184.1 ENSMUSG00000088184 ENSMUST00000157559 Gm23137 snRNA Interval_67798 chr16 57264239 57264801 + 0 NA TTS (ENSMUSG00000116675.1) processed_pseudogene-TTS (ENSMUSG00000116675.1) 1285 ENSMUSG00000116675.1 ENSMUSG00000116675 ENSMUST00000231600 Gm49581 processed_pseudogene Interval_74642 chr17 54191826 54192140 + 0 NA Intergenic Intergenic -31530 ENSMUSG00000102572.1 ENSMUSG00000102572 ENSMUST00000193122 Gm37966 TEC Interval_143360 chr7 6119371 6120575 + 0 NA Intergenic Intergenic -16457 ENSMUSG00000108923.1 ENSMUSG00000108923 ENSMUST00000208973 4933431C10Rik TEC Interval_162276 chr8 126610449 126611097 + 0 NA Intergenic Intergenic -16787 ENSMUSG00000051495.7 ENSMUSG00000051495 ENSMUST00000054960 Irf2bp2 protein_coding Interval_19875 chr10 110781493 110783014 + 0 NA exon (ENSMUSG00000020185.16, exon 12 of 13) protein_coding-exon (ENSMUSG00000020185.16, exon 12 of 13) -13920 ENSMUSG00000089461.1 ENSMUSG00000089461 ENSMUST00000158836 Gm23698 snoRNA Interval_85366 chr19 25231206 25231632 + 0 NA Intergenic Intergenic -65203 ENSMUSG00000065634.1 ENSMUSG00000065634 ENSMUST00000083700 Gm24252 snoRNA Interval_109879 chr3 149358033 149358800 + 0 NA intron (ENSMUSG00000106515.4, intron 1 of 1) lincRNA-intron (ENSMUSG00000106515.4, intron 2 of 3) -17408 ENSMUSG00000089269.1 ENSMUSG00000089269 ENSMUST00000158644 Gm26468 snRNA Interval_90449 chr2 30520678 30521695 + 0 NA Intergenic Intergenic -13543 ENSMUSG00000085275.1 ENSMUSG00000085275 ENSMUST00000145413 Gm14487 lincRNA Interval_152152 chr7 130205744 130207394 + 0 NA intron (ENSMUSG00000030849.18, intron 1 of 12) protein_coding-intron (ENSMUSG00000030849.18, intron 3 of 14) 59686 ENSMUSG00000030849.18 ENSMUSG00000030849 ENSMUST00000208844 Fgfr2 protein_coding Interval_145138 chr7 30242933 30243770 + 0 NA intron (ENSMUSG00000037020.16, intron 25 of 32) protein_coding-intron (ENSMUSG00000037020.16, intron 25 of 32) -2468 ENSMUSG00000037020.16 ENSMUSG00000037020 ENSMUST00000152234 Wdr62 protein_coding Interval_137891 chr6 83165384 83166491 + 0 NA promoter-TSS (ENSMUSG00000031865.16) protein_coding-promoter-TSS (ENSMUSG00000031865.16) 6818 ENSMUSG00000085782.2 ENSMUSG00000085782 ENSMUST00000145420 Gm15624 antisense Interval_83259 chr18 83063357 83063872 + 0 NA exon (ENSMUSG00000118094.1, exon 3 of 3) processed_transcript-exon (ENSMUSG00000118094.1, exon 3 of 3) -42459 ENSMUSG00000117976.1 ENSMUSG00000117976 ENSMUST00000238101 Gm50437 lincRNA Interval_140439 chr6 118099286 118099854 + 0 NA Intergenic Intergenic 12475 ENSMUSG00000077787.1 ENSMUSG00000077787 ENSMUST00000104599 Gm23908 snoRNA Interval_132133 chr5 142881010 142881773 + 0 NA intron (ENSMUSG00000066640.11, intron 3 of 4) protein_coding-intron (ENSMUSG00000066640.11, intron 3 of 4) -3018 ENSMUSG00000097559.1 ENSMUSG00000097559 ENSMUST00000181842 D430018E03Rik sense_intronic Interval_155657 chr8 35707593 35709018 + 0 NA exon (ENSMUSG00000110335.1, exon 3 of 3) lincRNA-exon (ENSMUSG00000110335.1, exon 3 of 3) 11644 ENSMUSG00000110335.1 ENSMUSG00000110335 ENSMUST00000209585 1700015I17Rik lincRNA Interval_78440 chr18 12870860 12871157 + 0 NA exon (ENSMUSG00000044252.18, exon 15 of 15) protein_coding-exon (ENSMUSG00000044252.18, exon 15 of 15) 8579 ENSMUSG00000117494.1 ENSMUSG00000117494 ENSMUST00000234213 Gm49970 antisense Interval_51267 chr14 25633996 25634545 + 0 NA intron (ENSMUSG00000007817.15, intron 1 of 4) protein_coding-intron (ENSMUSG00000007817.15, intron 6 of 23) -59924 ENSMUSG00000021868.7 ENSMUSG00000021868 ENSMUST00000223872 Ppif protein_coding Interval_134243 chr6 23472524 23473499 + 0 NA intron (ENSMUSG00000017978.18, intron 9 of 29) protein_coding-intron (ENSMUSG00000017978.18, intron 8 of 29) -46735 ENSMUSG00000098877.1 ENSMUSG00000098877 ENSMUST00000185172 Gm27959 rRNA Interval_88749 chr2 10272348 10273427 + 0 NA Intergenic Intergenic -99561 ENSMUSG00000061186.15 ENSMUSG00000061186 ENSMUST00000041105 Sfmbt2 protein_coding Interval_105675 chr3 88514928 88515568 + 0 NA Intergenic Intergenic 12107 ENSMUSG00000103115.1 ENSMUSG00000103115 ENSMUST00000193595 Gm37584 lincRNA Interval_115267 chr4 95015383 95015660 + 0 NA intron (ENSMUSG00000086251.1, intron 3 of 4) antisense-intron (ENSMUSG00000086251.1, intron 3 of 4) 24104 ENSMUSG00000081030.1 ENSMUSG00000081030 ENSMUST00000119789 Gm12704 processed_pseudogene Interval_19842 chr10 110177771 110178210 + 0 NA intron (ENSMUSG00000020181.18, intron 3 of 40) protein_coding-intron (ENSMUSG00000020181.18, intron 3 of 4) -37821 ENSMUSG00000112595.1 ENSMUSG00000112595 ENSMUST00000218767 Gm47340 processed_pseudogene Interval_123793 chr5 35555452 35555754 + 0 NA TTS (ENSMUSG00000029097.11) protein_coding-TTS (ENSMUSG00000029097.11) 1419 ENSMUSG00000083907.2 ENSMUSG00000083907 ENSMUST00000119494 Plk-ps1 processed_pseudogene Interval_117630 chr4 125136307 125137105 + 0 NA Intergenic Intergenic -14186 ENSMUSG00000042677.7 ENSMUSG00000042677 ENSMUST00000131685 Zc3h12a protein_coding Interval_171313 chr9 116294717 116295023 + 0 NA Intergenic Intergenic -36298 ENSMUSG00000110752.1 ENSMUSG00000110752 ENSMUST00000217456 D730003K21Rik lincRNA Interval_135879 chr6 48172879 48173501 + 0 NA Intergenic Intergenic -13910 ENSMUSG00000097434.2 ENSMUSG00000097434 ENSMUST00000180741 Gm16630 lincRNA Interval_92634 chr2 61747889 61748098 + 0 NA intron (ENSMUSG00000026914.15, intron 3 of 6) protein_coding-intron (ENSMUSG00000026914.15, intron 3 of 11) 14476 ENSMUSG00000092660.1 ENSMUSG00000092660 ENSMUST00000174919 Gm22403 miRNA Interval_128221 chr5 111835888 111837386 + 0 NA Intergenic Intergenic 43250 ENSMUSG00000105376.4 ENSMUSG00000105376 ENSMUST00000200641 Gm36535 lincRNA Interval_3037 chr1 52489688 52490294 + 0 NA TTS (ENSMUSG00000002881.14) protein_coding-TTS (ENSMUSG00000002881.14) 10309 ENSMUSG00000002881.14 ENSMUSG00000002881 ENSMUST00000168082 Nab1 protein_coding Interval_26966 chr11 61929687 61930815 + 0 NA promoter-TSS (ENSMUSG00000047804.15) protein_coding-promoter-TSS (ENSMUSG00000047804.15) -44 ENSMUSG00000047804.15 ENSMUSG00000047804 ENSMUST00000143952 Akap10 protein_coding Interval_56804 chr14 122197352 122197754 + 0 NA intron (ENSMUSG00000025545.10, intron 1 of 7) protein_coding-intron (ENSMUSG00000025545.10, intron 1 of 7) 36101 ENSMUSG00000100585.1 ENSMUSG00000100585 ENSMUST00000187423 1700108J01Rik antisense Interval_60123 chr15 65909038 65910394 + 0 NA intron (ENSMUSG00000015001.17, intron 1 of 12) protein_coding-intron (ENSMUSG00000015001.17, intron 1 of 14) -8155 ENSMUSG00000015001.17 ENSMUSG00000015001 ENSMUST00000147776 Oc90 protein_coding Interval_111701 chr4 26345918 26347061 + 0 NA intron (ENSMUSG00000040520.7, intron 1 of 1) protein_coding-intron (ENSMUSG00000040520.7, intron 1 of 4) 402 ENSMUSG00000040520.7 ENSMUSG00000040520 ENSMUST00000153813 Manea protein_coding Interval_165152 chr9 44861147 44861529 + 0 NA intron (ENSMUSG00000002028.13, intron 1 of 3) protein_coding-intron (ENSMUSG00000002028.13, intron 1 of 35) -2163 ENSMUSG00000111017.1 ENSMUSG00000111017 ENSMUST00000213541 Gm48314 TEC Interval_62949 chr15 98107877 98109055 + 0 NA promoter-TSS (ENSMUSG00000033065.14) protein_coding-promoter-TSS (ENSMUSG00000033065.14) 15183 ENSMUSG00000097150.1 ENSMUSG00000097150 ENSMUST00000181802 Gm26513 antisense Interval_173576 chrX 99706057 99706923 + 0 NA Intergenic Intergenic -18716 ENSMUSG00000082505.1 ENSMUSG00000082505 ENSMUST00000117174 Gm14816 processed_pseudogene Interval_127684 chr5 106628611 106628851 + 0 NA intron (ENSMUSG00000098302.1, intron 1 of 2) protein_coding-intron (ENSMUSG00000049606.16, intron 5 of 6) 18439 ENSMUSG00000106142.1 ENSMUSG00000106142 ENSMUST00000197908 Gm17937 processed_pseudogene Interval_42403 chr13 13220053 13221249 + 0 NA Intergenic Intergenic 4274 ENSMUSG00000113729.1 ENSMUSG00000113729 ENSMUST00000223064 Gm48589 processed_pseudogene Interval_123449 chr5 32634906 32635853 + 0 NA intron (ENSMUSG00000014932.15, intron 1 of 11) protein_coding-intron (ENSMUSG00000014932.15, intron 1 of 11) 5537 ENSMUSG00000107018.1 ENSMUSG00000107018 ENSMUST00000200773 Gm43694 TEC Interval_165963 chr9 55011896 55012141 + 0 NA exon (ENSMUSG00000032303.8, exon 6 of 6) protein_coding-exon (ENSMUSG00000032303.8, exon 6 of 6) 14541 ENSMUSG00000032303.8 ENSMUSG00000032303 ENSMUST00000214204 Chrna3 protein_coding Interval_42334 chr13 12176163 12177786 + 0 NA TTS (ENSMUSG00000113789.1) TEC-TTS (ENSMUSG00000113789.1) 2307 ENSMUSG00000113789.1 ENSMUSG00000113789 ENSMUST00000221565 Gm47322 TEC Interval_173195 chrX 74005967 74007078 + 0 NA promoter-TSS (ENSMUSG00000080829.1) processed_pseudogene-promoter-TSS (ENSMUSG00000080829.1) -180 ENSMUSG00000080829.1 ENSMUSG00000080829 ENSMUST00000120692 Gm8545 processed_pseudogene Interval_87585 chr19 53582784 53582968 + 0 NA Intergenic Intergenic 6192 ENSMUSG00000071497.4 ENSMUSG00000071497 ENSMUST00000095978 Nutf2-ps1 protein_coding Interval_171565 chr9 119223575 119224549 + 0 NA intron (ENSMUSG00000092212.3, intron 2 of 5) protein_coding-intron (ENSMUSG00000070280.13, intron 1 of 10) 7630 ENSMUSG00000092212.3 ENSMUSG00000092212 ENSMUST00000173185 Slc22a13b polymorphic_pseudogene Interval_83990 chr19 5966625 5967319 + 0 NA Intergenic Intergenic -2803 ENSMUSG00000024833.15 ENSMUSG00000024833 ENSMUST00000238043 Pola2 protein_coding Interval_140485 chr6 118709472 118709693 + 0 NA intron (ENSMUSG00000051331.16, intron 8 of 44) protein_coding-intron (ENSMUSG00000051331.16, intron 10 of 46) -90358 ENSMUSG00000100867.1 ENSMUSG00000100867 ENSMUST00000185373 Gm18981 processed_pseudogene Interval_43097 chr13 23985259 23985793 + 0 NA intron (ENSMUSG00000021337.8, intron 2 of 10) protein_coding-intron (ENSMUSG00000021337.8, intron 2 of 10) 28717 ENSMUSG00000087603.1 ENSMUSG00000087603 ENSMUST00000154766 Gm11339 antisense Interval_3591 chr1 59817379 59817691 + 0 NA intron (ENSMUSG00000067336.6, intron 3 of 12) protein_coding-intron (ENSMUSG00000067336.6, intron 3 of 12) 16272 ENSMUSG00000104052.1 ENSMUSG00000104052 ENSMUST00000194136 Gm38125 TEC Interval_161318 chr8 119708714 119709284 + 0 NA intron (ENSMUSG00000034112.9, intron 1 of 5) protein_coding-intron (ENSMUSG00000034112.9, intron 1 of 26) -5455 ENSMUSG00000110445.1 ENSMUSG00000110445 ENSMUST00000212203 Gm45747 TEC Interval_104019 chr3 57446749 57447414 + 0 NA Intergenic Intergenic 21767 ENSMUSG00000027801.7 ENSMUSG00000027801 ENSMUST00000029377 Tm4sf4 protein_coding Interval_75116 chr17 63582674 63583754 + 0 NA Intergenic Intergenic 12311 ENSMUSG00000117256.1 ENSMUSG00000117256 ENSMUST00000233628 Gm5497 processed_pseudogene Interval_15625 chr10 52423069 52423669 + 0 NA intron (ENSMUSG00000023068.16, intron 1 of 4) protein_coding-intron (ENSMUSG00000023068.16, intron 1 of 4) -5562 ENSMUSG00000023068.16 ENSMUSG00000023068 ENSMUST00000218983 Nus1 protein_coding Interval_151518 chr7 123218667 123220822 + 0 NA intron (ENSMUSG00000030769.15, intron 1 of 16) protein_coding-intron (ENSMUSG00000030769.15, intron 1 of 16) -45445 ENSMUSG00000030769.15 ENSMUSG00000030769 ENSMUST00000206180 Slc5a11 protein_coding Interval_7069 chr1 125370738 125371336 + 0 NA Intergenic Intergenic 64444 ENSMUSG00000026341.16 ENSMUSG00000026341 ENSMUST00000188827 Actr3 protein_coding Interval_143330 chr7 5467580 5467773 + 0 NA Intergenic Intergenic -11936 ENSMUSG00000117744.1 ENSMUSG00000117744 ENSMUST00000074132 Vmn1r59 protein_coding Interval_96787 chr2 128255829 128256020 + 0 NA intron (ENSMUSG00000074813.14, intron 2 of 3) lincRNA-intron (ENSMUSG00000074813.14, intron 2 of 4) 65937 ENSMUSG00000085750.1 ENSMUSG00000085750 ENSMUST00000152439 Gm14009 lincRNA Interval_29768 chr11 86682939 86684398 + 0 NA promoter-TSS (ENSMUSG00000072582.9) protein_coding-promoter-TSS (ENSMUSG00000072582.9) -317 ENSMUSG00000072582.9 ENSMUSG00000072582 ENSMUST00000108021 Ptrh2 protein_coding Interval_125541 chr5 69556602 69557789 + 0 NA promoter-TSS (ENSMUSG00000107291.1) TEC-promoter-TSS (ENSMUSG00000107291.1) -313 ENSMUSG00000107291.1 ENSMUSG00000107291 ENSMUST00000201115 3110031N09Rik TEC Interval_158343 chr8 82104171 82105581 + 0 NA intron (ENSMUSG00000037940.17, intron 24 of 24) protein_coding-intron (ENSMUSG00000037940.17, intron 22 of 22) 47906 ENSMUSG00000089147.1 ENSMUSG00000089147 ENSMUST00000158522 Gm25267 snRNA Interval_145475 chr7 35055741 35057101 + 0 NA promoter-TSS (ENSMUSG00000056216.9) protein_coding-promoter-TSS (ENSMUSG00000056216.9) 394 ENSMUSG00000108333.1 ENSMUSG00000108333 ENSMUST00000206736 Gm45095 antisense Interval_140995 chr6 124065639 124065973 + 0 NA TTS (ENSMUSG00000096630.2) protein_coding-TTS (ENSMUSG00000096630.2) -7192 ENSMUSG00000089307.1 ENSMUSG00000089307 ENSMUST00000158682 Gm24843 snoRNA Interval_71349 chr17 22506676 22506979 + 0 NA Intergenic Intergenic 12205 ENSMUSG00000117259.1 ENSMUSG00000117259 ENSMUST00000232727 Gm19012 processed_pseudogene Interval_71399 chr17 23540095 23541457 + 0 NA Intergenic Intergenic -10023 ENSMUSG00000117322.1 ENSMUSG00000117322 ENSMUST00000233076 6330415G19Rik antisense Interval_87544 chr19 53351574 53351886 + 0 NA intron (ENSMUSG00000025025.14, intron 3 of 5) protein_coding-intron (ENSMUSG00000025025.14, intron 3 of 5) 20036 ENSMUSG00000067085.1 ENSMUSG00000067085 ENSMUST00000086887 Gm10197 protein_coding Interval_119541 chr4 138261859 138262940 + 0 NA promoter-TSS (ENSMUSG00000028758.12) protein_coding-promoter-TSS (ENSMUSG00000028758.12) -73 ENSMUSG00000028758.12 ENSMUSG00000028758 ENSMUST00000105820 Kif17 protein_coding Interval_149522 chr7 99320526 99321271 + 0 NA promoter-TSS (ENSMUSG00000109460.1) sense_intronic-promoter-TSS (ENSMUSG00000109460.1) -302 ENSMUSG00000109460.1 ENSMUSG00000109460 ENSMUST00000129058 Gm45591 sense_intronic Interval_94709 chr2 93583110 93583595 + 0 NA Intergenic Intergenic -59036 ENSMUSG00000040310.12 ENSMUSG00000040310 ENSMUST00000111254 Alx4 protein_coding Interval_110658 chr4 5768651 5768952 + 0 NA intron (ENSMUSG00000049119.14, intron 2 of 4) protein_coding-intron (ENSMUSG00000049119.14, intron 2 of 2) -4078 ENSMUSG00000049119.14 ENSMUSG00000049119 ENSMUST00000145365 Fam110b protein_coding Interval_160112 chr8 106515599 106516857 + 0 NA intron (ENSMUSG00000061048.8, intron 2 of 15) protein_coding-intron (ENSMUSG00000061048.8, intron 2 of 15) 5337 ENSMUSG00000061048.8 ENSMUSG00000061048 ENSMUST00000080797 Cdh3 protein_coding Interval_14778 chr10 39772071 39772405 + 0 NA intron (ENSMUSG00000019841.15, intron 2 of 32) protein_coding-intron (ENSMUSG00000019841.15, intron 1 of 31) -19370 ENSMUSG00000081608.1 ENSMUSG00000081608 ENSMUST00000122161 Gm16210 processed_pseudogene Interval_168822 chr9 87638976 87639183 + 0 NA Intergenic Intergenic -90206 ENSMUSG00000103710.1 ENSMUSG00000103710 ENSMUST00000192660 D030062O11Rik TEC Interval_4335 chr1 72792431 72793876 + 0 NA Intergenic Intergenic -55546 ENSMUSG00000039323.18 ENSMUSG00000039323 ENSMUST00000155703 Igfbp2 protein_coding Interval_79953 chr18 36224974 36225641 + 0 NA Intergenic Intergenic -55790 ENSMUSG00000043991.5 ENSMUSG00000043991 ENSMUST00000051301 Pura protein_coding Interval_56280 chr14 116206799 116207396 + 0 NA intron (ENSMUSG00000022112.14, intron 7 of 7) protein_coding-intron (ENSMUSG00000022112.14, intron 7 of 7) -335819 ENSMUSG00000093497.1 ENSMUSG00000093497 ENSMUST00000176344 Gm20713 processed_transcript Interval_174578 chrX 159371758 159373170 + 0 NA intron (ENSMUSG00000067194.6, intron 1 of 1) protein_coding-intron (ENSMUSG00000067194.6, intron 1 of 6) 286 ENSMUSG00000067194.6 ENSMUSG00000067194 ENSMUST00000087143 Eif1ax protein_coding Interval_18545 chr10 87419711 87420379 + 0 NA Intergenic Intergenic -55899 ENSMUSG00000096692.1 ENSMUSG00000096692 ENSMUST00000179147 Gm23191 snRNA Interval_163729 chr9 24967447 24967756 + 0 NA Intergenic Intergenic 3065 ENSMUSG00000088731.1 ENSMUSG00000088731 ENSMUST00000158106 Gm23893 snoRNA Interval_59345 chr15 51796902 51797466 + 0 NA intron (ENSMUSG00000022312.11, intron 4 of 7) protein_coding-intron (ENSMUSG00000022312.11, intron 4 of 7) 39073 ENSMUSG00000022312.11 ENSMUSG00000022312 ENSMUST00000228583 Eif3h protein_coding Interval_111059 chr4 11558600 11560070 + 0 NA intron (ENSMUSG00000078773.11, intron 1 of 4) protein_coding-intron (ENSMUSG00000078773.11, intron 1 of 14) -17308 ENSMUSG00000078773.11 ENSMUSG00000078773 ENSMUST00000144499 Rad54b protein_coding Interval_27218 chr11 64202065 64202319 + 0 NA Intergenic Intergenic 37619 ENSMUSG00000087622.1 ENSMUSG00000087622 ENSMUST00000145095 Gm12290 lincRNA Interval_4905 chr1 82282889 82284052 + 0 NA intron (ENSMUSG00000055980.2, intron 1 of 1) protein_coding-intron (ENSMUSG00000055980.2, intron 1 of 1) 7946 ENSMUSG00000055980.2 ENSMUSG00000055980 ENSMUST00000069799 Irs1 protein_coding Interval_136477 chr6 54830803 54831495 + 0 NA intron (ENSMUSG00000058446.14, intron 1 of 3) protein_coding-intron (ENSMUSG00000058446.14, intron 1 of 4) 13879 ENSMUSG00000058446.14 ENSMUSG00000058446 ENSMUST00000127331 Znrf2 protein_coding Interval_150832 chr7 115354090 115354329 + 0 NA Intergenic Intergenic 181936 ENSMUSG00000099211.1 ENSMUSG00000099211 ENSMUST00000183778 Gm27684 miRNA Interval_33927 chr11 119467907 119468141 + 0 NA exon (ENSMUSG00000070327.14, exon 50 of 67) protein_coding-exon (ENSMUSG00000070327.14, exon 50 of 67) -10033 ENSMUSG00000070327.14 ENSMUSG00000070327 ENSMUST00000172235 Rnf213 protein_coding Interval_115411 chr4 98738765 98741457 + 0 NA Intergenic Intergenic -5624 ENSMUSG00000090718.1 ENSMUSG00000090718 ENSMUST00000166016 Gm17376 pseudogene Interval_109654 chr3 145756627 145759725 + 0 NA promoter-TSS (ENSMUSG00000028194.15) protein_coding-promoter-TSS (ENSMUSG00000028194.15) -19010 ENSMUSG00000105608.1 ENSMUSG00000105608 ENSMUST00000198263 Gm43408 processed_pseudogene Interval_63487 chr15 101387278 101389142 + 0 NA intron (ENSMUSG00000116114.1, intron 1 of 2) antisense-intron (ENSMUSG00000116114.1, intron 1 of 2) 14858 ENSMUSG00000116114.1 ENSMUSG00000116114 ENSMUST00000229169 Gm35853 antisense Interval_62612 chr15 95590940 95591493 + 0 NA Intergenic Intergenic 15449 ENSMUSG00000089560.1 ENSMUSG00000089560 ENSMUST00000158935 Gm24668 snRNA Interval_35405 chr12 21384852 21385230 + 0 NA Intergenic Intergenic 11276 ENSMUSG00000116819.1 ENSMUSG00000116819 ENSMUST00000232122 Gm49586 bidirectional_promoter_lncRNA Interval_33721 chr11 118086056 118086257 + 0 NA exon (ENSMUSG00000033987.16, exon 37 of 81) protein_coding-exon (ENSMUSG00000033987.16, exon 37 of 81) 3038 ENSMUSG00000033987.16 ENSMUSG00000033987 ENSMUST00000018719 Dnah17 protein_coding Interval_136309 chr6 52837291 52839175 + 0 NA intron (ENSMUSG00000063568.11, intron 2 of 4) protein_coding-intron (ENSMUSG00000063568.11, intron 2 of 4) 5468 ENSMUSG00000081872.1 ENSMUSG00000081872 ENSMUST00000119248 Gm15572 processed_pseudogene Interval_55128 chr14 78418395 78419160 + 0 NA Intergenic Intergenic -42515 ENSMUSG00000115450.1 ENSMUSG00000115450 ENSMUST00000227356 Gm4821 processed_pseudogene Interval_91636 chr2 45071235 45071465 + 0 NA intron (ENSMUSG00000026872.18, intron 2 of 3) protein_coding-intron (ENSMUSG00000026872.18, intron 2 of 9) -39571 ENSMUSG00000052248.16 ENSMUSG00000052248 ENSMUST00000231441 Zeb2os antisense Interval_119425 chr4 137577630 137578804 + 0 NA intron (ENSMUSG00000094035.3, intron 2 of 4) protein_coding-intron (ENSMUSG00000094035.3, intron 2 of 4) 3887 ENSMUSG00000094035.3 ENSMUSG00000094035 ENSMUST00000238941 Ldlrad2 protein_coding Interval_8996 chr1 152991784 152993072 + 0 NA intron (ENSMUSG00000042751.14, intron 2 of 8) protein_coding-intron (ENSMUSG00000042751.14, intron 1 of 10) -42331 ENSMUSG00000100702.1 ENSMUSG00000100702 ENSMUST00000187136 Gm8976 processed_pseudogene Interval_169058 chr9 91361204 91362546 + 0 NA promoter-TSS (ENSMUSG00000036972.14) protein_coding-promoter-TSS (ENSMUSG00000036972.14) 1179 ENSMUSG00000032368.14 ENSMUSG00000032368 ENSMUST00000173121 Zic1 protein_coding Interval_94974 chr2 102400307 102401551 + 0 NA promoter-TSS (ENSMUSG00000027189.16) protein_coding-promoter-TSS (ENSMUSG00000027189.16) -672 ENSMUSG00000027189.16 ENSMUSG00000027189 ENSMUST00000144110 Trim44 protein_coding Interval_173669 chrX 101687482 101688342 + 0 NA Intergenic Intergenic 3938 ENSMUSG00000082729.3 ENSMUSG00000082729 ENSMUST00000121259 Gm14845 processed_pseudogene Interval_139176 chr6 96876680 96877775 + 0 NA intron (ENSMUSG00000046500.8, intron 3 of 5) protein_coding-intron (ENSMUSG00000046500.8, intron 3 of 5) 183166 ENSMUSG00000046500.8 ENSMUSG00000046500 ENSMUST00000203930 Tafa4 protein_coding Interval_121289 chr4 154749257 154750857 + 0 NA Intergenic Intergenic -82190 ENSMUSG00000051276.4 ENSMUSG00000051276 ENSMUST00000060062 Actrt2 protein_coding Interval_65544 chr16 23210135 23210581 + 0 NA intron (ENSMUSG00000068463.4, intron 1 of 2) antisense-intron (ENSMUSG00000068463.4, intron 1 of 2) -12237 ENSMUSG00000081988.1 ENSMUSG00000081988 ENSMUST00000120684 Gm15746 processed_pseudogene Interval_84245 chr19 8997494 8998927 + 0 NA exon (ENSMUSG00000069833.13, exon 1 of 5) protein_coding-exon (ENSMUSG00000069833.13, exon 1 of 5) 8926 ENSMUSG00000069833.13 ENSMUSG00000069833 ENSMUST00000237033 Ahnak protein_coding Interval_130440 chr5 127638885 127640540 + 0 NA intron (ENSMUSG00000049971.17, intron 1 of 10) protein_coding-intron (ENSMUSG00000049971.17, intron 1 of 11) 7450 ENSMUSG00000049971.17 ENSMUSG00000049971 ENSMUST00000134529 Glt1d1 protein_coding Interval_50657 chr14 17659206 17661452 + 0 NA promoter-TSS (ENSMUSG00000021779.17) protein_coding-promoter-TSS (ENSMUSG00000021779.17) 110793 ENSMUSG00000114281.1 ENSMUSG00000114281 ENSMUST00000225878 Gm48320 processed_pseudogene Interval_86006 chr19 34872145 34872411 + 0 NA intron (ENSMUSG00000033610.16, intron 1 of 6) protein_coding-intron (ENSMUSG00000033610.16, intron 1 of 6) 5575 ENSMUSG00000033610.16 ENSMUSG00000033610 ENSMUST00000237577 Pank1 protein_coding Interval_44357 chr13 44121111 44121368 + 0 NA promoter-TSS (ENSMUSG00000089815.7) lincRNA-promoter-TSS (ENSMUSG00000089815.7) 72 ENSMUSG00000089815.7 ENSMUSG00000089815 ENSMUST00000159595 Gm5083 lincRNA Interval_93149 chr2 70631090 70632037 + 0 NA Intergenic Intergenic -12687 ENSMUSG00000086699.3 ENSMUSG00000086699 ENSMUST00000153501 Gm16510 processed_pseudogene Interval_142651 chr6 144709116 144710043 + 0 NA intron (ENSMUSG00000041540.16, intron 1 of 6) protein_coding-intron (ENSMUSG00000041540.16, intron 1 of 13) -11332 ENSMUSG00000086282.1 ENSMUSG00000086282 ENSMUST00000155562 Sox5os4 antisense Interval_80100 chr18 37505821 37506712 + 0 NA exon (ENSMUSG00000046191.7, exon 1 of 1) protein_coding-exon (ENSMUSG00000046191.7, exon 1 of 1) 2002 ENSMUSG00000046191.7 ENSMUSG00000046191 ENSMUST00000052179 Pcdhb20 protein_coding Interval_70139 chr17 5745383 5745701 + 0 NA intron (ENSMUSG00000034265.8, intron 8 of 8) protein_coding-intron (ENSMUSG00000034265.8, intron 8 of 8) -53949 ENSMUSG00000096965.7 ENSMUSG00000096965 ENSMUST00000181392 3300005D01Rik lincRNA Interval_148986 chr7 90756262 90756716 + 0 NA intron (ENSMUSG00000052572.19, intron 4 of 27) protein_coding-intron (ENSMUSG00000052572.19, intron 4 of 27) 55672 ENSMUSG00000109074.1 ENSMUSG00000109074 ENSMUST00000209013 Gm45162 processed_pseudogene Interval_105717 chr3 88896742 88899472 + 0 NA exon (ENSMUSG00000054199.17, exon 21 of 31) protein_coding-exon (ENSMUSG00000054199.17, exon 21 of 31) 1894 ENSMUSG00000106218.1 ENSMUSG00000106218 ENSMUST00000198251 Gm43713 antisense Interval_79597 chr18 33937435 33938075 + 0 NA intron (ENSMUSG00000024376.7, intron 2 of 2) protein_coding-intron (ENSMUSG00000024376.7, intron 2 of 23) 69211 ENSMUSG00000024376.7 ENSMUSG00000024376 ENSMUST00000237971 Epb41l4a protein_coding Interval_155591 chr8 34932843 34933556 + 0 NA intron (ENSMUSG00000031529.5, intron 2 of 26) protein_coding-intron (ENSMUSG00000031529.5, intron 2 of 26) -14431 ENSMUSG00000031529.5 ENSMUSG00000031529 ENSMUST00000211065 Tnks protein_coding Interval_118571 chr4 132567269 132567758 + 0 NA intron (ENSMUSG00000056529.7, intron 1 of 1) protein_coding-intron (ENSMUSG00000056529.7, intron 1 of 1) 3446 ENSMUSG00000056529.7 ENSMUSG00000056529 ENSMUST00000070690 Ptafr protein_coding Interval_28053 chr11 72515755 72516038 + 0 NA intron (ENSMUSG00000020798.14, intron 8 of 11) protein_coding-intron (ENSMUSG00000020798.14, intron 7 of 10) -13453 ENSMUSG00000020798.14 ENSMUSG00000020798 ENSMUST00000021154 Spns3 protein_coding Interval_15745 chr10 55767526 55768915 + 0 NA Intergenic Intergenic 333783 ENSMUSG00000112528.1 ENSMUSG00000112528 ENSMUST00000218919 Gm29794 processed_pseudogene Interval_7146 chr1 127219614 127220358 + 0 NA intron (ENSMUSG00000036155.13, intron 1 of 7) protein_coding-intron (ENSMUSG00000036155.13, intron 1 of 17) 14958 ENSMUSG00000036155.13 ENSMUSG00000036155 ENSMUST00000171405 Mgat5 protein_coding Interval_30269 chr11 92499995 92500286 + 0 NA Intergenic Intergenic 270833 ENSMUSG00000081363.2 ENSMUSG00000081363 ENSMUST00000118237 Gm11500 processed_pseudogene Interval_101429 chr2 181322230 181323063 + 0 NA intron (ENSMUSG00000038685.18, intron 3 of 5) protein_coding-intron (ENSMUSG00000038685.18, intron 3 of 32) -8146 ENSMUSG00000027581.12 ENSMUSG00000027581 ENSMUST00000103045 Stmn3 protein_coding Interval_48993 chr13 106790159 106790411 + 0 NA intron (ENSMUSG00000101308.1, intron 2 of 3) antisense-intron (ENSMUSG00000101308.1, intron 2 of 3) 2215 ENSMUSG00000101308.1 ENSMUSG00000101308 ENSMUST00000187867 Gm28989 antisense Interval_144327 chr7 24499016 24500602 + 0 NA promoter-TSS (ENSMUSG00000054793.8) protein_coding-promoter-TSS (ENSMUSG00000054793.8) -152 ENSMUSG00000054793.8 ENSMUSG00000054793 ENSMUST00000205820 Cadm4 protein_coding Interval_143018 chr6 148436078 148436569 + 0 NA intron (ENSMUSG00000030306.14, intron 1 of 18) protein_coding-intron (ENSMUSG00000030306.14, intron 1 of 19) 5312 ENSMUSG00000030306.14 ENSMUSG00000030306 ENSMUST00000203991 Tmtc1 protein_coding Interval_51003 chr14 21569512 21570245 + 0 NA intron (ENSMUSG00000021767.19, intron 2 of 5) protein_coding-intron (ENSMUSG00000021767.19, intron 2 of 16) 53003 ENSMUSG00000021767.19 ENSMUSG00000021767 ENSMUST00000226589 Kat6b protein_coding Interval_131693 chr5 139333601 139334602 + 0 NA Intergenic Intergenic 17317 ENSMUSG00000045438.12 ENSMUSG00000045438 ENSMUST00000148000 Cox19 protein_coding Interval_150234 chr7 108678254 108679343 + 0 NA Intergenic Intergenic 12326 ENSMUSG00000096209.4 ENSMUSG00000096209 ENSMUST00000076289 Olfr510 protein_coding Interval_64459 chr16 11579698 11580231 + 0 NA intron (ENSMUSG00000071669.14, intron 15 of 20) protein_coding-intron (ENSMUSG00000071669.14, intron 8 of 13) -83658 ENSMUSG00000082653.1 ENSMUSG00000082653 ENSMUST00000117770 Gm15897 processed_pseudogene Interval_5754 chr1 91494135 91495446 + 0 NA promoter-TSS (ENSMUSG00000034292.13) protein_coding-promoter-TSS (ENSMUSG00000034292.13) 143 ENSMUSG00000034292.13 ENSMUSG00000034292 ENSMUST00000187588 Traf3ip1 protein_coding Interval_152522 chr7 133796539 133796948 + 0 NA intron (ENSMUSG00000053111.13, intron 1 of 4) protein_coding-intron (ENSMUSG00000053111.13, intron 1 of 10) 7258 ENSMUSG00000053111.13 ENSMUSG00000053111 ENSMUST00000211077 Fank1 protein_coding Interval_122288 chr5 20960558 20962486 + 0 NA Intergenic Intergenic 10533 ENSMUSG00000101013.1 ENSMUSG00000101013 ENSMUST00000190567 A630072M18Rik antisense Interval_143055 chr6 148944400 148946988 + 0 NA promoter-TSS (ENSMUSG00000039985.14) protein_coding-promoter-TSS (ENSMUSG00000039985.14) 827 ENSMUSG00000085355.2 ENSMUSG00000085355 ENSMUST00000154673 3010003L21Rik antisense Interval_63678 chr15 102742541 102742910 + 0 NA Intergenic Intergenic -32665 ENSMUSG00000023055.10 ENSMUSG00000023055 ENSMUST00000230374 Calcoco1 protein_coding Interval_137079 chr6 67205057 67206348 + 0 NA promoter-TSS (ENSMUSG00000047905.10) processed_pseudogene-promoter-TSS (ENSMUSG00000047905.10) 83 ENSMUSG00000047905.10 ENSMUSG00000047905 ENSMUST00000120174 Gm8566 processed_pseudogene Interval_80271 chr18 38678822 38680025 + 0 NA intron (ENSMUSG00000118193.1, intron 1 of 5) lincRNA-intron (ENSMUSG00000118257.1, intron 3 of 3) 2705 ENSMUSG00000118193.1 ENSMUSG00000118193 ENSMUST00000148850 Arhgap26 protein_coding Interval_63325 chr15 100313659 100315247 + 0 NA TTS (ENSMUSG00000054619.7) protein_coding-TTS (ENSMUSG00000054619.7) 10225 ENSMUSG00000054619.7 ENSMUSG00000054619 ENSMUST00000230018 Mettl7a1 protein_coding Interval_118634 chr4 132905953 132906315 + 0 NA intron (ENSMUSG00000028878.11, intron 5 of 7) protein_coding-intron (ENSMUSG00000028878.11, intron 6 of 8) 14775 ENSMUSG00000028878.11 ENSMUSG00000028878 ENSMUST00000148667 Fam76a protein_coding Interval_27778 chr11 69947482 69949152 + 0 NA promoter-TSS (ENSMUSG00000018566.14) protein_coding-promoter-TSS (ENSMUSG00000018566.14) -172 ENSMUSG00000018566.14 ENSMUSG00000018566 ENSMUST00000135437 Slc2a4 protein_coding Interval_59294 chr15 50847625 50848224 + 0 NA intron (ENSMUSG00000038679.16, intron 1 of 1) protein_coding-intron (ENSMUSG00000038679.16, intron 2 of 6) 41190 ENSMUSG00000084458.1 ENSMUSG00000084458 ENSMUST00000122509 Mir1907 miRNA Interval_161585 chr8 121390619 121391066 + 0 NA intron (ENSMUSG00000092329.1, intron 1 of 15) protein_coding-intron (ENSMUSG00000092329.1, intron 1 of 15) -30396 ENSMUSG00000097783.2 ENSMUSG00000097783 ENSMUST00000180597 Gm26747 lincRNA Interval_136937 chr6 64764947 64765486 + 0 NA Intergenic Intergenic 36091 ENSMUSG00000073043.5 ENSMUSG00000073043 ENSMUST00000101351 Atoh1 protein_coding Interval_93077 chr2 69962851 69963677 + 0 NA intron (ENSMUSG00000044308.17, intron 19 of 38) protein_coding-intron (ENSMUSG00000044308.17, intron 19 of 38) -25522 ENSMUSG00000044308.17 ENSMUSG00000044308 ENSMUST00000123890 Ubr3 protein_coding Interval_52390 chr14 45543523 45543736 + 0 NA promoter-TSS (ENSMUSG00000115324.1) bidirectional_promoter_lncRNA-promoter-TSS (ENSMUSG00000115324.1) -62 ENSMUSG00000115846.1 ENSMUSG00000115846 ENSMUST00000228455 Gm41144 lincRNA Interval_125837 chr5 74867051 74868364 + 0 NA Intergenic Intergenic -15628 ENSMUSG00000106806.1 ENSMUSG00000106806 ENSMUST00000202480 Gm17906 processed_pseudogene Interval_49761 chr13 114676289 114676526 + 0 NA intron (ENSMUSG00000051758.6, intron 3 of 6) lincRNA-intron (ENSMUSG00000051758.6, intron 3 of 6) 69170 ENSMUSG00000051758.6 ENSMUSG00000051758 ENSMUST00000181553 4930544M13Rik lincRNA Interval_905 chr1 13084491 13085638 + 0 NA Intergenic Intergenic 16226 ENSMUSG00000099498.1 ENSMUSG00000099498 ENSMUST00000187394 Gm29283 lincRNA Interval_14373 chr10 31789054 31789542 + 0 NA intron (ENSMUSG00000069670.8, intron 4 of 6) protein_coding-intron (ENSMUSG00000069670.8, intron 4 of 6) -78614 ENSMUSG00000112866.1 ENSMUSG00000112866 ENSMUST00000219333 Gm47704 TEC Interval_16248 chr10 61706764 61707249 + 0 NA Intergenic Intergenic 10359 ENSMUSG00000020087.5 ENSMUSG00000020087 ENSMUST00000218280 Tysnd1 protein_coding Interval_91144 chr2 35444994 35447097 + 0 NA promoter-TSS (ENSMUSG00000035778.17) protein_coding-promoter-TSS (ENSMUSG00000035778.17) -8734 ENSMUSG00000106856.1 ENSMUSG00000106856 ENSMUST00000202132 Gm43761 TEC Interval_152703 chr7 136592849 136593292 + 0 NA Intergenic Intergenic -64139 ENSMUSG00000109894.1 ENSMUSG00000109894 ENSMUST00000210286 Gm5904 processed_pseudogene Interval_168880 chr9 88319060 88320350 + 0 NA Intergenic Intergenic 32981 ENSMUSG00000111795.1 ENSMUSG00000111795 ENSMUST00000215074 Gm47620 processed_pseudogene Interval_18985 chr10 93577229 93578126 + 0 NA intron (ENSMUSG00000036168.15, intron 13 of 15) protein_coding-intron (ENSMUSG00000036168.15, intron 13 of 15) -11736 ENSMUSG00000097407.1 ENSMUSG00000097407 ENSMUST00000181835 4933408J17Rik lincRNA Interval_116424 chr4 111719625 111720853 + 0 NA promoter-TSS (ENSMUSG00000034401.16) protein_coding-promoter-TSS (ENSMUSG00000034401.16) 176 ENSMUSG00000034401.16 ENSMUSG00000034401 ENSMUST00000132802 Spata6 protein_coding Interval_5024 chr1 84340602 84340849 + 0 NA intron (ENSMUSG00000045658.16, intron 1 of 4) protein_coding-intron (ENSMUSG00000045658.16, intron 1 of 2) 54674 ENSMUSG00000104396.1 ENSMUSG00000104396 ENSMUST00000191700 Gm37959 TEC Interval_171318 chr9 116322680 116323044 + 0 NA Intergenic Intergenic -8306 ENSMUSG00000110752.1 ENSMUSG00000110752 ENSMUST00000217456 D730003K21Rik lincRNA Interval_141823 chr6 134730153 134730583 + 0 NA intron (ENSMUSG00000030203.17, intron 2 of 4) protein_coding-intron (ENSMUSG00000030203.17, intron 4 of 6) -23878 ENSMUSG00000108196.1 ENSMUSG00000108196 ENSMUST00000204237 Gm36328 antisense Interval_111104 chr4 12094714 12094908 + 0 NA exon (ENSMUSG00000052137.11, exon 4 of 4) protein_coding-exon (ENSMUSG00000052137.11, exon 4 of 4) 5372 ENSMUSG00000052137.11 ENSMUSG00000052137 ENSMUST00000063839 Rbm12b2 protein_coding Interval_30398 chr11 94133346 94134611 + 0 NA intron (ENSMUSG00000086003.7, intron 1 of 3) processed_transcript-intron (ENSMUSG00000086003.7, intron 1 of 5) 476 ENSMUSG00000086003.7 ENSMUSG00000086003 ENSMUST00000125406 B230206L02Rik processed_transcript Interval_77009 chr17 85616708 85618652 + 0 NA promoter-TSS (ENSMUSG00000099332.1) misc_RNA-promoter-TSS (ENSMUSG00000099332.1) -387 ENSMUSG00000099332.1 ENSMUSG00000099332 ENSMUST00000183495 Gm27502 misc_RNA Interval_125151 chr5 64877356 64879309 + 0 NA Intergenic Intergenic 20637 ENSMUSG00000118495.1 ENSMUSG00000118495 ENSMUST00000238830 AC161757.1 processed_pseudogene Interval_46603 chr13 67511041 67512448 + 0 NA intron (ENSMUSG00000097565.1, intron 3 of 5) protein_coding-intron (ENSMUSG00000097565.1, intron 3 of 5) -11241 ENSMUSG00000071291.10 ENSMUSG00000071291 ENSMUST00000163534 Zfp58 protein_coding Interval_77122 chr17 86713333 86714233 + 0 NA Intergenic Intergenic -10376 ENSMUSG00000087710.1 ENSMUSG00000087710 ENSMUST00000157085 Gm22235 snRNA Interval_130318 chr5 125637998 125638600 + 0 NA exon (ENSMUSG00000070498.3, exon 3 of 9) protein_coding-exon (ENSMUSG00000070498.3, exon 3 of 9) 106525 ENSMUSG00000070498.3 ENSMUSG00000070498 ENSMUST00000184422 Tmem132b protein_coding Interval_10920 chr1 177008808 177010393 + 0 NA intron (ENSMUSG00000026504.17, intron 1 of 2) protein_coding-intron (ENSMUSG00000026504.17, intron 16 of 17) 27336 ENSMUSG00000104391.1 ENSMUSG00000104391 ENSMUST00000192402 Gm37960 TEC Interval_60097 chr15 65462902 65463476 + 0 NA Intergenic Intergenic 224959 ENSMUSG00000115402.1 ENSMUSG00000115402 ENSMUST00000227091 Gm49243 processed_pseudogene Interval_12548 chr1 195130670 195132006 + 0 NA promoter-TSS (ENSMUSG00000016481.15) protein_coding-promoter-TSS (ENSMUSG00000016481.15) -1876 ENSMUSG00000016481.15 ENSMUSG00000016481 ENSMUST00000192405 Cr1l protein_coding Interval_60245 chr15 69022564 69022772 + 0 NA intron (ENSMUSG00000022332.8, intron 4 of 4) protein_coding-intron (ENSMUSG00000022332.8, intron 4 of 8) 63137 ENSMUSG00000116092.1 ENSMUSG00000116092 ENSMUST00000230699 Gm49422 sense_intronic Interval_153497 chr7 145216559 145216980 + 0 NA intron (ENSMUSG00000048677.9, intron 24 of 24) protein_coding-intron (ENSMUSG00000048677.9, intron 19 of 20) -8689 ENSMUSG00000109305.1 ENSMUSG00000109305 ENSMUST00000207841 Smim38 protein_coding Interval_21739 chr11 4043779 4044445 + 0 NA TTS (ENSMUSG00000019368.13) protein_coding-TTS (ENSMUSG00000019368.13) 12647 ENSMUSG00000019368.13 ENSMUSG00000019368 ENSMUST00000134482 Sec14l4 protein_coding Interval_173862 chrX 106064510 106065309 + 0 NA intron (ENSMUSG00000033792.12, intron 1 of 22) protein_coding-intron (ENSMUSG00000033792.12, intron 1 of 22) -42023 ENSMUSG00000033792.12 ENSMUSG00000033792 ENSMUST00000133875 Atp7a protein_coding Interval_16964 chr10 70168648 70168916 + 0 NA intron (ENSMUSG00000048701.13, intron 4 of 8) protein_coding-intron (ENSMUSG00000048701.13, intron 4 of 8) -6229 ENSMUSG00000048701.13 ENSMUSG00000048701 ENSMUST00000135607 Ccdc6 protein_coding Interval_160033 chr8 105929450 105931160 + 0 NA exon (ENSMUSG00000048310.8, exon 3 of 3) protein_coding-exon (ENSMUSG00000048310.8, exon 3 of 3) 3150 ENSMUSG00000031896.7 ENSMUSG00000031896 ENSMUST00000212561 Ctrl protein_coding Interval_96801 chr2 128412369 128413334 + 0 NA intron (ENSMUSG00000074813.14, intron 2 of 2) lincRNA-intron (ENSMUSG00000074813.14, intron 1 of 1) -10803 ENSMUSG00000079053.3 ENSMUSG00000079053 ENSMUST00000131961 Gm14010 lincRNA Interval_51667 chr14 31227160 31228780 + 0 NA exon (ENSMUSG00000021904.6, exon 16 of 16) protein_coding-exon (ENSMUSG00000021904.6, exon 16 of 16) 10110 ENSMUSG00000021904.6 ENSMUSG00000021904 ENSMUST00000090180 Sema3g protein_coding Interval_143451 chr7 6881365 6881848 + 0 NA intron (ENSMUSG00000051527.11, intron 2 of 7) protein_coding-intron (ENSMUSG00000051527.11, intron 2 of 7) -9432 ENSMUSG00000109082.1 ENSMUSG00000109082 ENSMUST00000207166 Gm44586 TEC Interval_116025 chr4 107083946 107085311 + 0 NA TTS (ENSMUSG00000028621.17) protein_coding-TTS (ENSMUSG00000028621.17) -13080 ENSMUSG00000047636.3 ENSMUSG00000047636 ENSMUST00000221740 Cdcp2 protein_coding Interval_81398 chr18 60493156 60493654 + 0 NA intron (ENSMUSG00000038059.7, intron 1 of 1) protein_coding-intron (ENSMUSG00000038059.7, intron 1 of 1) 8171 ENSMUSG00000038059.7 ENSMUSG00000038059 ENSMUST00000237270 Smim3 protein_coding Interval_57395 chr15 10564232 10564702 + 0 NA Intergenic Intergenic -2943 ENSMUSG00000052482.6 ENSMUSG00000052482 ENSMUST00000064353 Gm8174 processed_pseudogene Interval_87104 chr19 46131816 46132059 + 0 NA promoter-TSS (ENSMUSG00000038754.5) protein_coding-promoter-TSS (ENSMUSG00000038754.5) 40 ENSMUSG00000038754.5 ENSMUSG00000038754 ENSMUST00000237098 Elovl3 protein_coding Interval_155292 chr8 31001826 31002918 + 0 NA Intergenic Intergenic -1536 ENSMUSG00000109614.1 ENSMUSG00000109614 ENSMUST00000211579 Gm45252 processed_pseudogene Interval_34033 chr11 120123947 120124538 + 0 NA exon (ENSMUSG00000061306.16, exon 11 of 11) protein_coding-exon (ENSMUSG00000061306.16, exon 11 of 11) 25143 ENSMUSG00000078572.3 ENSMUSG00000078572 ENSMUST00000186913 Ndufaf8 protein_coding Interval_67028 chr16 41258108 41259147 + 0 NA intron (ENSMUSG00000061080.11, intron 2 of 8) protein_coding-intron (ENSMUSG00000061080.11, intron 2 of 8) 40850 ENSMUSG00000104844.1 ENSMUSG00000104844 ENSMUST00000198352 Gm47276 miRNA Interval_135053 chr6 34987784 34988796 + 0 NA intron (ENSMUSG00000029847.13, intron 1 of 11) protein_coding-intron (ENSMUSG00000029847.13, intron 1 of 11) 114 ENSMUSG00000029847.13 ENSMUSG00000029847 ENSMUST00000144079 Slc23a4 protein_coding Interval_114657 chr4 83510786 83511481 + 0 NA Intergenic Intergenic -5595 ENSMUSG00000066116.3 ENSMUSG00000066116 ENSMUST00000084445 Gm10154 processed_pseudogene Interval_163892 chr9 27739074 27739894 + 0 NA Intergenic Intergenic -51663 ENSMUSG00000062257.13 ENSMUSG00000062257 ENSMUST00000126845 Opcml protein_coding Interval_50814 chr14 19990553 19991155 + 0 NA Intergenic Intergenic -13670 ENSMUSG00000043004.13 ENSMUSG00000043004 ENSMUST00000161247 Gng2 protein_coding Interval_65413 chr16 22207340 22207638 + 0 NA Intergenic Intergenic -16755 ENSMUSG00000064686.1 ENSMUSG00000064686 ENSMUST00000082752 Gm25810 snRNA Interval_61785 chr15 84124153 84124418 + 0 NA Intergenic Intergenic -1110 ENSMUSG00000018868.4 ENSMUSG00000018868 ENSMUST00000019012 Pnpla5 protein_coding Interval_73896 chr17 45365713 45367071 + 0 NA Intergenic Intergenic 67149 ENSMUSG00000023932.9 ENSMUSG00000023932 ENSMUST00000232910 Cdc5l protein_coding Interval_161354 chr8 119918343 119918949 + 0 NA intron (ENSMUSG00000092329.1, intron 1 of 15) protein_coding-intron (ENSMUSG00000031826.20, intron 1 of 6) 7805 ENSMUSG00000092329.1 ENSMUSG00000092329 ENSMUST00000127664 Galnt2l protein_coding Interval_17256 chr10 75333272 75334977 + 0 NA exon (ENSMUSG00000020178.6, exon 3 of 3) protein_coding-exon (ENSMUSG00000020178.6, exon 3 of 3) -10348 ENSMUSG00000112471.1 ENSMUSG00000112471 ENSMUST00000218467 Gm5779 transcribed_processed_pseudogene Interval_44068 chr13 40703830 40705737 + 0 NA intron (ENSMUSG00000055732.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000055732.1, intron 1 of 1) 778 ENSMUSG00000055732.1 ENSMUSG00000055732 ENSMUST00000069457 Gm9979 lincRNA Interval_120560 chr4 149379685 149380693 + 0 NA exon (ENSMUSG00000028960.20, exon 8 of 29) protein_coding-exon (ENSMUSG00000028960.20, exon 8 of 29) 32304 ENSMUSG00000085819.7 ENSMUSG00000085819 ENSMUST00000141259 Ube4bos1 antisense Interval_107238 chr3 104817355 104818715 + 0 NA promoter-TSS (ENSMUSG00000002227.15) protein_coding-promoter-TSS (ENSMUSG00000002227.15) 81 ENSMUSG00000002227.15 ENSMUSG00000002227 ENSMUST00000145414 Mov10 protein_coding Interval_156793 chr8 60249827 60250407 + 0 NA intron (ENSMUSG00000109966.1, intron 5 of 5) lincRNA-intron (ENSMUSG00000109966.1, intron 5 of 5) 54315 ENSMUSG00000109966.1 ENSMUSG00000109966 ENSMUST00000210900 Gm34623 lincRNA Interval_81142 chr18 54879010 54879703 + 0 NA Intergenic Intergenic 11256 ENSMUSG00000118063.1 ENSMUSG00000118063 ENSMUST00000236532 Gm50366 processed_pseudogene Interval_31422 chr11 100580111 100580718 + 0 NA exon (ENSMUSG00000006782.16, exon 4 of 4) protein_coding-exon (ENSMUSG00000006782.16, exon 4 of 4) 4890 ENSMUSG00000006782.16 ENSMUSG00000006782 ENSMUST00000147403 Cnp protein_coding Interval_79140 chr18 24922985 24923287 + 0 NA intron (ENSMUSG00000034295.10, intron 5 of 24) protein_coding-intron (ENSMUSG00000034295.10, intron 5 of 26) 161973 ENSMUSG00000088920.1 ENSMUSG00000088920 ENSMUST00000158295 Gm24294 misc_RNA Interval_37730 chr12 71475205 71476857 + 0 NA intron (ENSMUSG00000113441.1, intron 5 of 5) lincRNA-intron (ENSMUSG00000113441.1, intron 5 of 5) -12254 ENSMUSG00000113630.1 ENSMUSG00000113630 ENSMUST00000220948 4930404H11Rik lincRNA Interval_8123 chr1 135833778 135834504 + 0 NA TTS (ENSMUSG00000041782.14) protein_coding-TTS (ENSMUSG00000041782.14) -2249 ENSMUSG00000026414.13 ENSMUSG00000026414 ENSMUST00000188098 Tnnt2 protein_coding Interval_111348 chr4 19566432 19566901 + 0 NA intron (ENSMUSG00000028228.5, intron 1 of 4) protein_coding-intron (ENSMUSG00000028228.5, intron 1 of 15) -8496 ENSMUSG00000028229.11 ENSMUSG00000028229 ENSMUST00000029888 Rmdn1 protein_coding Interval_73553 chr17 40371488 40372779 + 0 NA Intergenic Intergenic -46534 ENSMUSG00000117162.1 ENSMUSG00000117162 ENSMUST00000233579 Gm49840 processed_pseudogene Interval_123927 chr5 36598447 36598817 + 0 NA intron (ENSMUSG00000106797.1, intron 2 of 2) processed_transcript-intron (ENSMUSG00000106797.1, intron 2 of 2) 15107 ENSMUSG00000106797.1 ENSMUSG00000106797 ENSMUST00000174019 Gm42936 processed_transcript Interval_173320 chrX 79287358 79287794 + 0 NA intron (ENSMUSG00000073077.7, intron 63 of 64) protein_coding-intron (ENSMUSG00000073077.7, intron 63 of 64) 62734 ENSMUSG00000073077.7 ENSMUSG00000073077 ENSMUST00000101410 Cfap47 protein_coding Interval_104224 chr3 61057507 61058045 + 0 NA Intergenic Intergenic -53990 ENSMUSG00000102564.1 ENSMUSG00000102564 ENSMUST00000194809 Gm37035 antisense Interval_92071 chr2 52985328 52985822 + 0 NA intron (ENSMUSG00000036053.17, intron 1 of 26) protein_coding-intron (ENSMUSG00000036053.17, intron 1 of 26) 127715 ENSMUSG00000036053.17 ENSMUSG00000036053 ENSMUST00000050719 Fmnl2 protein_coding Interval_108569 chr3 129199213 129200314 + 0 NA promoter-TSS (ENSMUSG00000028023.16) protein_coding-promoter-TSS (ENSMUSG00000028023.16) -10243 ENSMUSG00000098515.1 ENSMUSG00000098515 ENSMUST00000184283 Gm27195 sense_intronic Interval_51362 chr14 27013182 27014356 + 0 NA Intergenic Intergenic 19353 ENSMUSG00000040726.10 ENSMUSG00000040726 ENSMUST00000035433 Hesx1 protein_coding Interval_82533 chr18 74989476 74989754 + 0 NA Intergenic Intergenic -8068 ENSMUSG00000118384.1 ENSMUSG00000118384 ENSMUST00000237753 9030625G05Rik lincRNA Interval_107079 chr3 103373910 103374476 + 0 NA Intergenic Intergenic -18740 ENSMUSG00000089029.1 ENSMUSG00000089029 ENSMUST00000158404 Gm25009 snoRNA Interval_59697 chr15 58691234 58691505 + 0 NA Intergenic Intergenic 90582 ENSMUSG00000093677.1 ENSMUSG00000093677 ENSMUST00000176387 Gm20712 sense_overlapping Interval_32641 chr11 109362199 109363620 + 0 NA promoter-TSS (ENSMUSG00000020611.14) protein_coding-promoter-TSS (ENSMUSG00000020611.14) 78 ENSMUSG00000020611.14 ENSMUSG00000020611 ENSMUST00000020930 Gna13 protein_coding Interval_174451 chrX 152643850 152645154 + 0 NA promoter-TSS (ENSMUSG00000045180.13) protein_coding-promoter-TSS (ENSMUSG00000045180.13) 28738 ENSMUSG00000045180.13 ENSMUSG00000045180 ENSMUST00000141677 Shroom2 protein_coding Interval_128009 chr5 110261664 110263009 + 0 NA intron (ENSMUSG00000087439.1, intron 1 of 1) protein_coding-intron (ENSMUSG00000029500.16, intron 5 of 5) 175 ENSMUSG00000087439.1 ENSMUSG00000087439 ENSMUST00000130123 Gm15788 antisense Interval_126000 chr5 76760960 76761158 + 0 NA intron (ENSMUSG00000036377.19, intron 2 of 3) protein_coding-intron (ENSMUSG00000036377.19, intron 2 of 10) -18546 ENSMUSG00000083874.1 ENSMUSG00000083874 ENSMUST00000121248 Gm7494 processed_pseudogene Interval_10384 chr1 170188666 170189185 + 0 NA Intergenic Intergenic -11153 ENSMUSG00000103908.1 ENSMUSG00000103908 ENSMUST00000192981 Gm37502 lincRNA Interval_89572 chr2 22921869 22922219 + 0 NA intron (ENSMUSG00000026784.14, intron 7 of 10) protein_coding-intron (ENSMUSG00000026784.14, intron 7 of 10) -8212 ENSMUSG00000081861.1 ENSMUSG00000081861 ENSMUST00000121960 Gm14441 processed_pseudogene Interval_58461 chr15 34837158 34838741 + 0 NA promoter-TSS (ENSMUSG00000050963.7) protein_coding-promoter-TSS (ENSMUSG00000050963.7) -100 ENSMUSG00000050963.7 ENSMUSG00000050963 ENSMUST00000228725 Kcns2 protein_coding Interval_140447 chr6 118179346 118180195 + 0 NA intron (ENSMUSG00000030110.13, intron 4 of 18) protein_coding-intron (ENSMUSG00000030110.13, intron 4 of 19) 17948 ENSMUSG00000030110.13 ENSMUSG00000030110 ENSMUST00000088790 Ret protein_coding Interval_91217 chr2 36006166 36007103 + 0 NA Intergenic Intergenic 42772 ENSMUSG00000026895.7 ENSMUSG00000026895 ENSMUST00000070112 Ndufa8 protein_coding Interval_114337 chr4 73573012 73573449 + 0 NA Intergenic Intergenic 15984 ENSMUSG00000077312.1 ENSMUSG00000077312 ENSMUST00000104124 Gm24170 snoRNA Interval_6268 chr1 105019596 105021337 + 0 NA Intergenic Intergenic -95988 ENSMUSG00000099669.1 ENSMUSG00000099669 ENSMUST00000187882 Gm29012 lincRNA Interval_162365 chr8 127439822 127441587 + 0 NA intron (ENSMUSG00000025812.18, intron 3 of 4) protein_coding-intron (ENSMUSG00000025812.18, intron 19 of 23) -120731 ENSMUSG00000090074.1 ENSMUSG00000090074 ENSMUST00000161478 Gm6921 processed_pseudogene Interval_48909 chr13 104643982 104644665 + 0 NA intron (ENSMUSG00000021715.12, intron 13 of 13) protein_coding-intron (ENSMUSG00000021715.12, intron 13 of 13) -40608 ENSMUSG00000084860.1 ENSMUSG00000084860 ENSMUST00000131215 2610204G07Rik antisense Interval_150249 chr7 108971956 108972894 + 0 NA intron (ENSMUSG00000031028.14, intron 1 of 3) protein_coding-intron (ENSMUSG00000031028.14, intron 1 of 3) 21768 ENSMUSG00000031028.14 ENSMUSG00000031028 ENSMUST00000147943 Tub protein_coding Interval_147456 chr7 67443165 67443489 + 0 NA intron (ENSMUSG00000109329.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000109329.1, intron 1 of 2) 606 ENSMUSG00000109329.1 ENSMUSG00000109329 ENSMUST00000208755 Gm33926 lincRNA Interval_110893 chr4 9647587 9649247 + 0 NA intron (ENSMUSG00000028207.18, intron 1 of 4) protein_coding-intron (ENSMUSG00000028207.18, intron 1 of 4) -4700 ENSMUSG00000028207.18 ENSMUSG00000028207 ENSMUST00000130617 Asph protein_coding Interval_59941 chr15 62116784 62117301 + 0 NA intron (ENSMUSG00000097039.8, intron 2 of 6) lincRNA-intron (ENSMUSG00000097039.8, intron 2 of 8) 9855 ENSMUSG00000099295.1 ENSMUSG00000099295 ENSMUST00000183721 Gm27718 misc_RNA Interval_50142 chr14 8242277 8243022 + 0 NA TTS (ENSMUSG00000021751.13) protein_coding-TTS (ENSMUSG00000021751.13) 15505 ENSMUSG00000021751.13 ENSMUSG00000021751 ENSMUST00000171175 Acox2 protein_coding Interval_164262 chr9 34660531 34660790 + 0 NA intron (ENSMUSG00000032036.15, intron 1 of 15) protein_coding-intron (ENSMUSG00000032036.15, intron 1 of 16) 138905 ENSMUSG00000103552.1 ENSMUSG00000103552 ENSMUST00000194358 Gm38217 TEC Interval_16448 chr10 62927892 62928273 + 0 NA intron (ENSMUSG00000071253.8, intron 1 of 8) protein_coding-intron (ENSMUSG00000071253.8, intron 1 of 8) -4558 ENSMUSG00000088875.1 ENSMUSG00000088875 ENSMUST00000158250 Gm25862 snoRNA Interval_65825 chr16 29559401 29561239 + 0 NA Intergenic Intergenic -15522 ENSMUSG00000038094.15 ENSMUSG00000038094 ENSMUST00000182694 Atp13a4 protein_coding Interval_30775 chr11 96397153 96398187 + 0 NA Intergenic Intergenic 5558 ENSMUSG00000075587.5 ENSMUSG00000075587 ENSMUST00000117614 Gm11531 processed_pseudogene Interval_122965 chr5 28013682 28014802 + 0 NA Intergenic Intergenic -12936 ENSMUSG00000104777.1 ENSMUSG00000104777 ENSMUST00000196284 Gm4865 processed_pseudogene Interval_88448 chr2 5137346 5138569 + 0 NA exon (ENSMUSG00000026676.7, exon 1 of 3) protein_coding-exon (ENSMUSG00000026676.7, exon 1 of 3) 181 ENSMUSG00000026676.7 ENSMUSG00000026676 ENSMUST00000027988 Ccdc3 protein_coding Interval_125566 chr5 71545677 71545980 + 0 NA intron (ENSMUSG00000049387.10, intron 1 of 2) protein_coding-intron (ENSMUSG00000049387.10, intron 1 of 2) 2377 ENSMUSG00000049387.10 ENSMUSG00000049387 ENSMUST00000050129 Cox7b2 protein_coding Interval_148060 chr7 78925384 78926140 + 0 NA Intergenic Intergenic -1876 ENSMUSG00000108670.1 ENSMUSG00000108670 ENSMUST00000206812 Gm44815 TEC Interval_110826 chr4 8772483 8773807 + 0 NA intron (ENSMUSG00000041235.12, intron 1 of 4) protein_coding-intron (ENSMUSG00000041235.12, intron 2 of 37) -82086 ENSMUSG00000041235.12 ENSMUSG00000041235 ENSMUST00000222546 Chd7 protein_coding Interval_114032 chr4 62630758 62631423 + 0 NA intron (ENSMUSG00000085177.1, intron 1 of 1) protein_coding-intron (ENSMUSG00000059810.18, intron 14 of 19) 2622 ENSMUSG00000085177.1 ENSMUSG00000085177 ENSMUST00000130206 Gm11209 antisense Interval_82912 chr18 79000233 79000582 + 0 NA intron (ENSMUSG00000024548.11, intron 2 of 5) protein_coding-intron (ENSMUSG00000024548.11, intron 2 of 5) 108984 ENSMUSG00000024548.11 ENSMUSG00000024548 ENSMUST00000025430 Setbp1 protein_coding Interval_45055 chr13 51768155 51768348 + 0 NA intron (ENSMUSG00000021451.16, intron 1 of 16) protein_coding-intron (ENSMUSG00000021451.16, intron 1 of 15) 2957 ENSMUSG00000092648.1 ENSMUSG00000092648 ENSMUST00000174907 Gm23566 miRNA Interval_34741 chr12 9132606 9133204 + 0 NA Intergenic Intergenic 102878 ENSMUSG00000066637.2 ENSMUSG00000066637 ENSMUST00000219470 Ttc32 protein_coding Interval_127928 chr5 109244214 109244417 + 0 NA Intergenic Intergenic 7771 ENSMUSG00000093543.1 ENSMUSG00000093543 ENSMUST00000176697 Gm8473 processed_pseudogene Interval_130201 chr5 124897541 124897833 + 0 NA intron (ENSMUSG00000079215.8, intron 3 of 3) protein_coding-intron (ENSMUSG00000079215.8, intron 3 of 3) 23535 ENSMUSG00000079215.8 ENSMUSG00000079215 ENSMUST00000134473 Zfp664 protein_coding Interval_114275 chr4 70402082 70402582 + 0 NA intron (ENSMUSG00000039298.16, intron 2 of 36) protein_coding-intron (ENSMUSG00000039298.16, intron 2 of 33) 8111 ENSMUSG00000039298.16 ENSMUSG00000039298 ENSMUST00000126416 Cdk5rap2 protein_coding Interval_118850 chr4 134057987 134059098 + 0 NA intron (ENSMUSG00000049410.8, intron 4 of 4) protein_coding-intron (ENSMUSG00000049410.8, intron 4 of 4) -2273 ENSMUSG00000012123.17 ENSMUSG00000012123 ENSMUST00000143295 Crybg2 protein_coding Interval_9668 chr1 160884239 160885200 + 0 NA Intergenic Intergenic -8397 ENSMUSG00000077648.1 ENSMUSG00000077648 ENSMUST00000104460 Gm24988 snoRNA Interval_46186 chr13 62286692 62287426 + 0 NA Intergenic Intergenic 14298 ENSMUSG00000113081.1 ENSMUSG00000113081 ENSMUST00000221763 Gm3333 transcribed_processed_pseudogene Interval_9956 chr1 164365972 164367168 + 0 NA intron (ENSMUSG00000026575.15, intron 2 of 3) protein_coding-intron (ENSMUSG00000026575.15, intron 8 of 12) -58143 ENSMUSG00000103493.1 ENSMUSG00000103493 ENSMUST00000194180 Gm37411 TEC Interval_172478 chrX 20936931 20937163 + 0 NA intron (ENSMUSG00000009406.13, intron 3 of 5) protein_coding-intron (ENSMUSG00000009406.13, intron 3 of 5) -9433 ENSMUSG00000001128.7 ENSMUSG00000001128 ENSMUST00000122862 Cfp protein_coding Interval_24892 chr11 40865100 40866234 + 0 NA Intergenic Intergenic -111729 ENSMUSG00000020326.7 ENSMUSG00000020326 ENSMUST00000151359 Ccng1 protein_coding Interval_55638 chr14 97398363 97399024 + 0 NA Intergenic Intergenic -62061 ENSMUSG00000088538.1 ENSMUSG00000088538 ENSMUST00000157913 Gm23276 snoRNA Interval_139987 chr6 113227464 113228833 + 0 NA Intergenic Intergenic -27684 ENSMUSG00000030269.14 ENSMUSG00000030269 ENSMUST00000151149 Mtmr14 protein_coding Interval_129188 chr5 118066364 118067887 + 0 NA exon (ENSMUSG00000032867.8, exon 11 of 11) protein_coding-exon (ENSMUSG00000032867.8, exon 11 of 11) 1765 ENSMUSG00000029360.3 ENSMUSG00000029360 ENSMUST00000031305 Gm9754 antisense Interval_40044 chr12 100831100 100832572 + 0 NA intron (ENSMUSG00000021185.16, intron 2 of 3) protein_coding-intron (ENSMUSG00000021185.16, intron 2 of 12) -18500 ENSMUSG00000021185.16 ENSMUSG00000021185 ENSMUST00000133970 Dglucy protein_coding Interval_166856 chr9 63259506 63260083 + 0 NA intron (ENSMUSG00000058444.8, intron 7 of 10) protein_coding-intron (ENSMUSG00000058444.8, intron 15 of 21) -112783 ENSMUSG00000022245.15 ENSMUSG00000022245 ENSMUST00000055281 Skor1 protein_coding Interval_94563 chr2 92242795 92243218 + 0 NA intron (ENSMUSG00000058318.15, intron 6 of 6) protein_coding-intron (ENSMUSG00000058318.15, intron 4 of 15) 9901 ENSMUSG00000083951.1 ENSMUSG00000083951 ENSMUST00000122371 Gm13786 processed_pseudogene Interval_119360 chr4 137142530 137143373 + 0 NA Intergenic Intergenic 22115 ENSMUSG00000085833.2 ENSMUSG00000085833 ENSMUST00000151040 Gm13003 lincRNA Interval_89443 chr2 20703460 20703666 + 0 NA intron (ENSMUSG00000036617.17, intron 5 of 5) protein_coding-intron (ENSMUSG00000036617.17, intron 4 of 18) 9671 ENSMUSG00000086418.1 ENSMUSG00000086418 ENSMUST00000137186 Gm13362 antisense Interval_38574 chr12 80202345 80203555 + 0 NA intron (ENSMUSG00000015143.15, intron 3 of 4) protein_coding-intron (ENSMUSG00000015143.15, intron 3 of 20) -6293 ENSMUSG00000112852.1 ENSMUSG00000112852 ENSMUST00000218235 Gm47767 antisense Interval_28211 chr11 74392589 74392855 + 0 NA intron (ENSMUSG00000038807.19, intron 22 of 25) protein_coding-intron (ENSMUSG00000038807.19, intron 22 of 25) 30653 ENSMUSG00000058275.3 ENSMUSG00000058275 ENSMUST00000077794 Olfr412 protein_coding Interval_118974 chr4 134795020 134795500 + 0 NA Intergenic Intergenic 15953 ENSMUSG00000028826.14 ENSMUSG00000028826 ENSMUST00000136113 Maco1 protein_coding Interval_7794 chr1 133736311 133736512 + 0 NA intron (ENSMUSG00000026463.17, intron 6 of 19) protein_coding-intron (ENSMUSG00000026463.17, intron 6 of 20) -9766 ENSMUSG00000098606.1 ENSMUSG00000098606 ENSMUST00000183597 Mir6903 miRNA Interval_117260 chr4 121067946 121068248 + 0 NA TTS (ENSMUSG00000043207.10) protein_coding-TTS (ENSMUSG00000043207.10) 7825 ENSMUSG00000088314.1 ENSMUSG00000088314 ENSMUST00000157689 Gm26186 snoRNA Interval_97408 chr2 135856573 135857499 + 0 NA intron (ENSMUSG00000039943.16, intron 2 of 36) protein_coding-intron (ENSMUSG00000039943.16, intron 1 of 35) -44109 ENSMUSG00000086928.1 ENSMUSG00000086928 ENSMUST00000140949 Gm14210 lincRNA Interval_79760 chr18 34963263 34963477 + 0 NA Intergenic Intergenic 7365 ENSMUSG00000118145.1 ENSMUSG00000118145 ENSMUST00000237898 Gm6724 processed_pseudogene Interval_17396 chr10 76344572 76346861 + 0 NA promoter-TSS (ENSMUSG00000020231.15) protein_coding-promoter-TSS (ENSMUSG00000020231.15) -484 ENSMUSG00000020231.15 ENSMUSG00000020231 ENSMUST00000162766 Dip2a protein_coding Interval_154157 chr8 13124591 13125453 + 0 NA TTS (ENSMUSG00000031446.14) protein_coding-TTS (ENSMUSG00000031446.14) -11050 ENSMUSG00000098532.1 ENSMUSG00000098532 ENSMUST00000185110 Mir7065 miRNA Interval_100899 chr2 173232263 173232941 + 0 NA intron (ENSMUSG00000038400.15, intron 3 of 4) protein_coding-intron (ENSMUSG00000038400.15, intron 2 of 3) -13705 ENSMUSG00000027514.14 ENSMUSG00000027514 ENSMUST00000109116 Zbp1 protein_coding Interval_117511 chr4 124291885 124292439 + 0 NA Intergenic Intergenic 7686 ENSMUSG00000086087.1 ENSMUSG00000086087 ENSMUST00000139012 Gm12916 lincRNA Interval_28812 chr11 78473604 78474299 + 0 NA exon (ENSMUSG00000050132.13, exon 9 of 9) protein_coding-exon (ENSMUSG00000050132.13, exon 9 of 9) 3725 ENSMUSG00000020829.9 ENSMUSG00000020829 ENSMUST00000180786 Slc46a1 protein_coding Interval_151080 chr7 118381546 118381897 + 0 NA exon (ENSMUSG00000058420.8, exon 8 of 8) protein_coding-exon (ENSMUSG00000058420.8, exon 8 of 8) -12004 ENSMUSG00000118412.1 ENSMUSG00000118412 ENSMUST00000238497 Gm32766 unitary_pseudogene Interval_28134 chr11 73071970 73072424 + 0 NA intron (ENSMUSG00000020783.14, intron 9 of 12) protein_coding-intron (ENSMUSG00000020783.14, intron 9 of 12) -18386 ENSMUSG00000005947.11 ENSMUSG00000005947 ENSMUST00000006101 Itgae protein_coding Interval_62665 chr15 96114143 96115414 + 0 NA Intergenic Intergenic -59953 ENSMUSG00000078925.11 ENSMUSG00000078925 ENSMUST00000140253 D030018L15Rik lincRNA Interval_42499 chr13 14182818 14183349 + 0 NA intron (ENSMUSG00000039219.18, intron 4 of 6) protein_coding-intron (ENSMUSG00000039219.18, intron 17 of 22) 12030 ENSMUSG00000113775.1 ENSMUSG00000113775 ENSMUST00000221111 Gm48027 sense_intronic Interval_152515 chr7 133742848 133743336 + 0 NA intron (ENSMUSG00000030986.13, intron 2 of 2) protein_coding-intron (ENSMUSG00000030986.13, intron 3 of 11) -4158 ENSMUSG00000081431.1 ENSMUSG00000081431 ENSMUST00000120338 Gm15483 processed_pseudogene Interval_131493 chr5 137544879 137545149 + 0 NA Intergenic Intergenic -8524 ENSMUSG00000029712.14 ENSMUSG00000029712 ENSMUST00000031725 Actl6b protein_coding Interval_81310 chr18 57818873 57819452 + 0 NA Intergenic Intergenic -26802 ENSMUSG00000118391.1 ENSMUSG00000118391 ENSMUST00000236807 Gm19519 antisense Interval_61221 chr15 80075663 80078107 + 0 NA TTS (ENSMUSG00000060036.14) protein_coding-TTS (ENSMUSG00000060036.14) 1706 ENSMUSG00000077734.1 ENSMUSG00000077734 ENSMUST00000104546 Snord83b snoRNA Interval_139531 chr6 100833166 100834525 + 0 NA exon (ENSMUSG00000052144.8, exon 1 of 9) protein_coding-exon (ENSMUSG00000052144.8, exon 1 of 9) -18640 ENSMUSG00000052144.8 ENSMUSG00000052144 ENSMUST00000203067 Ppp4r2 protein_coding Interval_30088 chr11 89105815 89107971 + 0 NA Intergenic Intergenic -19742 ENSMUSG00000088798.1 ENSMUSG00000088798 ENSMUST00000158173 Gm22534 snRNA Interval_117594 chr4 124899664 124900749 + 0 NA intron (ENSMUSG00000028876.7, intron 1 of 1) protein_coding-intron (ENSMUSG00000028876.7, intron 4 of 14) 804 ENSMUSG00000028876.7 ENSMUSG00000028876 ENSMUST00000151791 Epha10 protein_coding Interval_13399 chr10 17771474 17771698 + 0 NA Intergenic Intergenic 23742 ENSMUSG00000093672.2 ENSMUSG00000093672 ENSMUST00000176132 Gm20655 antisense Interval_82032 chr18 67287826 67289796 + 0 NA promoter-TSS (ENSMUSG00000024525.7) protein_coding-promoter-TSS (ENSMUSG00000024525.7) -19778 ENSMUSG00000024525.7 ENSMUSG00000024525 ENSMUST00000237149 Impa2 protein_coding Interval_23745 chr11 25746378 25747831 + 0 NA intron (ENSMUSG00000032985.15, intron 2 of 5) protein_coding-intron (ENSMUSG00000032985.15, intron 4 of 6) 22037 ENSMUSG00000032985.15 ENSMUSG00000032985 ENSMUST00000125987 5730522E02Rik protein_coding Interval_60927 chr15 77934992 77935780 + 0 NA Intergenic Intergenic -7651 ENSMUSG00000005354.16 ENSMUSG00000005354 ENSMUST00000100486 Txn2 protein_coding Interval_95204 chr2 104773681 104773923 + 0 NA intron (ENSMUSG00000074994.6, intron 8 of 12) protein_coding-intron (ENSMUSG00000074994.6, intron 7 of 11) 42958 ENSMUSG00000074994.6 ENSMUSG00000074994 ENSMUST00000238887 Qser1 protein_coding Interval_52868 chr14 51265884 51266795 + 0 NA Intergenic Intergenic -10227 ENSMUSG00000047222.7 ENSMUSG00000047222 ENSMUST00000061936 Rnase2a protein_coding Interval_119368 chr4 137265614 137265959 + 0 NA Intergenic Intergenic -11703 ENSMUSG00000036856.4 ENSMUSG00000036856 ENSMUST00000045747 Wnt4 protein_coding Interval_60627 chr15 75786160 75786897 + 0 NA intron (ENSMUSG00000075600.3, intron 2 of 6) protein_coding-intron (ENSMUSG00000075600.3, intron 4 of 11) 26669 ENSMUSG00000077416.1 ENSMUSG00000077416 ENSMUST00000104228 Gm23747 snoRNA Interval_14168 chr10 28259823 28259999 + 0 NA intron (ENSMUSG00000019889.10, intron 2 of 2) protein_coding-intron (ENSMUSG00000019889.10, intron 2 of 31) -45790 ENSMUSG00000076377.1 ENSMUSG00000076377 ENSMUST00000102422 Gm22370 miRNA Interval_137327 chr6 71374319 71374712 + 0 NA exon (ENSMUSG00000053977.13, exon 2 of 5) protein_coding-exon (ENSMUSG00000053977.13, exon 2 of 5) 967 ENSMUSG00000053977.13 ENSMUSG00000053977 ENSMUST00000172321 Cd8a protein_coding Interval_125075 chr5 64282733 64283224 + 0 NA intron (ENSMUSG00000029174.18, intron 12 of 20) protein_coding-intron (ENSMUSG00000029174.18, intron 11 of 21) -29753 ENSMUSG00000081143.2 ENSMUSG00000081143 ENSMUST00000064305 Gm15823 processed_pseudogene Interval_126356 chr5 86970399 86970600 + 0 NA Intergenic Intergenic -6321 ENSMUSG00000106185.1 ENSMUSG00000106185 ENSMUST00000196935 Gm7631 unprocessed_pseudogene Interval_67342 chr16 46641886 46643406 + 0 NA Intergenic Intergenic 104811 ENSMUSG00000116915.1 ENSMUSG00000116915 ENSMUST00000231611 Gm17900 processed_pseudogene Interval_51916 chr14 33923069 33925090 + 0 NA exon (ENSMUSG00000021943.7, exon 1 of 3) protein_coding-exon (ENSMUSG00000021943.7, exon 1 of 3) 492 ENSMUSG00000021943.7 ENSMUSG00000021943 ENSMUST00000168727 Gdf10 protein_coding Interval_43310 chr13 28947063 28948836 + 0 NA TTS (ENSMUSG00000076431.4) protein_coding-TTS (ENSMUSG00000076431.4) 5764 ENSMUSG00000076431.4 ENSMUSG00000076431 ENSMUST00000067230 Sox4 protein_coding Interval_119671 chr4 139130047 139131675 + 0 NA exon (ENSMUSG00000050608.11, exon 1 of 4) protein_coding-exon (ENSMUSG00000050608.11, exon 1 of 4) 133 ENSMUSG00000050608.11 ENSMUSG00000050608 ENSMUST00000154642 Micos10 protein_coding Interval_16905 chr10 69690717 69690921 + 0 NA intron (ENSMUSG00000069601.14, intron 2 of 2) protein_coding-intron (ENSMUSG00000069601.14, intron 1 of 16) -124458 ENSMUSG00000112729.1 ENSMUSG00000112729 ENSMUST00000220152 Gm46231 processed_pseudogene Interval_143109 chr6 149408390 149409692 + 0 NA promoter-TSS (ENSMUSG00000003452.15) protein_coding-promoter-TSS (ENSMUSG00000003452.15) 155 ENSMUSG00000003452.15 ENSMUSG00000003452 ENSMUST00000140759 Bicd1 protein_coding Interval_66721 chr16 36626711 36627130 + 0 NA intron (ENSMUSG00000022901.13, intron 2 of 2) protein_coding-intron (ENSMUSG00000022901.13, intron 2 of 7) -22401 ENSMUSG00000022901.13 ENSMUSG00000022901 ENSMUST00000145506 Cd86 protein_coding Interval_17211 chr10 75015110 75015756 + 0 NA exon (ENSMUSG00000040009.6, exon 4 of 4) protein_coding-exon (ENSMUSG00000040009.6, exon 4 of 4) 17120 ENSMUSG00000009070.14 ENSMUSG00000009070 ENSMUST00000159761 Rsph14 protein_coding Interval_143493 chr7 10470880 10472068 + 0 NA Intergenic Intergenic -1781 ENSMUSG00000118408.1 ENSMUSG00000118408 ENSMUST00000238284 Gm30645 processed_pseudogene Interval_25649 chr11 50405943 50406287 + 0 NA intron (ENSMUSG00000020375.9, intron 10 of 17) protein_coding-intron (ENSMUSG00000020375.9, intron 10 of 17) 8460 ENSMUSG00000020375.9 ENSMUSG00000020375 ENSMUST00000129304 Rufy1 protein_coding Interval_74746 chr17 56287908 56288342 + 0 NA intron (ENSMUSG00000024197.10, intron 1 of 4) protein_coding-intron (ENSMUSG00000024197.10, intron 1 of 7) 4748 ENSMUSG00000024197.10 ENSMUSG00000024197 ENSMUST00000233070 Plin3 protein_coding Interval_66622 chr16 35704574 35705261 + 0 NA exon (ENSMUSG00000022848.8, exon 8 of 9) protein_coding-exon (ENSMUSG00000022848.8, exon 8 of 9) 17316 ENSMUSG00000087793.1 ENSMUSG00000087793 ENSMUST00000157168 Gm25967 snoRNA Interval_25584 chr11 49957729 49958840 + 0 NA intron (ENSMUSG00000020374.16, intron 3 of 13) protein_coding-intron (ENSMUSG00000020374.16, intron 3 of 13) -5501 ENSMUSG00000020374.16 ENSMUSG00000020374 ENSMUST00000109172 Rasgef1c protein_coding Interval_95924 chr2 118466158 118466876 + 0 NA intron (ENSMUSG00000005102.13, intron 33 of 39) protein_coding-intron (ENSMUSG00000005102.13, intron 32 of 38) 9357 ENSMUSG00000005102.13 ENSMUSG00000005102 ENSMUST00000125281 Eif2ak4 protein_coding Interval_98003 chr2 146568416 146569476 + 0 NA Intergenic Intergenic 26015 ENSMUSG00000085796.1 ENSMUSG00000085796 ENSMUST00000147212 4933406D12Rik lincRNA Interval_121254 chr4 154429295 154429617 + 0 NA intron (ENSMUSG00000039410.16, intron 3 of 15) protein_coding-intron (ENSMUSG00000039410.16, intron 3 of 16) 93329 ENSMUSG00000097871.1 ENSMUSG00000097871 ENSMUST00000181143 B230104I21Rik lincRNA Interval_29088 chr11 80241641 80241938 + 0 NA promoter-TSS (ENSMUSG00000017686.17) protein_coding-promoter-TSS (ENSMUSG00000017686.17) -12912 ENSMUSG00000017686.17 ENSMUSG00000017686 ENSMUST00000236882 Rhot1 protein_coding Interval_154567 chr8 19647703 19649002 + 0 NA intron (ENSMUSG00000110463.1, intron 1 of 4) lincRNA-intron (ENSMUSG00000110463.1, intron 1 of 4) 16970 ENSMUSG00000110463.1 ENSMUSG00000110463 ENSMUST00000212862 Gm35998 lincRNA Interval_157945 chr8 77102510 77103000 + 0 NA intron (ENSMUSG00000031618.13, intron 2 of 7) protein_coding-intron (ENSMUSG00000031618.13, intron 2 of 7) 43725 ENSMUSG00000089309.1 ENSMUSG00000089309 ENSMUST00000158684 Gm24838 snoRNA Interval_65505 chr16 22882176 22882467 + 0 NA intron (ENSMUSG00000116831.1, intron 3 of 3) antisense-intron (ENSMUSG00000116831.1, intron 3 of 3) 12065 ENSMUSG00000116831.1 ENSMUSG00000116831 ENSMUST00000231692 Gm30505 antisense Interval_2816 chr1 45818442 45819200 + 0 NA intron (ENSMUSG00000025995.16, intron 15 of 19) protein_coding-intron (ENSMUSG00000025995.16, intron 15 of 20) -3737 ENSMUSG00000025995.16 ENSMUSG00000025995 ENSMUST00000186651 Wdr75 protein_coding Interval_112793 chr4 45036122 45036422 + 0 NA exon (ENSMUSG00000028318.14, exon 12 of 12) protein_coding-exon (ENSMUSG00000028318.14, exon 12 of 12) 5010 ENSMUSG00000028318.14 ENSMUSG00000028318 ENSMUST00000153252 Polr1e protein_coding Interval_156749 chr8 57879441 57879723 + 0 NA intron (ENSMUSG00000096914.3, intron 8 of 12) protein_coding-intron (ENSMUSG00000096914.3, intron 3 of 7) -12161 ENSMUSG00000109753.1 ENSMUSG00000109753 ENSMUST00000210669 Gm45633 TEC Interval_111749 chr4 27258972 27259653 + 0 NA Intergenic Intergenic -36908 ENSMUSG00000080958.1 ENSMUSG00000080958 ENSMUST00000118849 Gm11902 processed_pseudogene Interval_61022 chr15 78820779 78821196 + 0 NA exon (ENSMUSG00000116499.1, exon 1 of 1) processed_pseudogene-exon (ENSMUSG00000116499.1, exon 1 of 1) 177 ENSMUSG00000116499.1 ENSMUSG00000116499 ENSMUST00000230007 Gm7318 processed_pseudogene Interval_39278 chr12 86433208 86434039 + 0 NA intron (ENSMUSG00000021255.17, intron 1 of 6) protein_coding-intron (ENSMUSG00000021255.17, intron 1 of 6) -36494 ENSMUSG00000021255.17 ENSMUSG00000021255 ENSMUST00000136464 Esrrb protein_coding Interval_113351 chr4 53728109 53728312 + 0 NA intron (ENSMUSG00000028414.17, intron 3 of 11) protein_coding-intron (ENSMUSG00000028414.17, intron 1 of 8) -7010 ENSMUSG00000089621.1 ENSMUSG00000089621 ENSMUST00000158996 Gm25445 misc_RNA Interval_70419 chr17 10030366 10031224 + 0 NA Intergenic Intergenic 82958 ENSMUSG00000117206.1 ENSMUSG00000117206 ENSMUST00000233132 Gm49809 processed_pseudogene Interval_70903 chr17 15746468 15747207 + 0 NA intron (ENSMUSG00000023852.14, intron 4 of 10) protein_coding-intron (ENSMUSG00000023852.14, intron 17 of 35) 8302 ENSMUSG00000023852.14 ENSMUSG00000023852 ENSMUST00000173040 Chd1 protein_coding Interval_126763 chr5 92719080 92719267 + 0 NA intron (ENSMUSG00000029381.16, intron 1 of 11) protein_coding-intron (ENSMUSG00000029381.16, intron 1 of 10) -17032 ENSMUSG00000092266.1 ENSMUSG00000092266 ENSMUST00000174621 Gm20500 sense_intronic Interval_52119 chr14 36863843 36864494 + 0 NA Intergenic Intergenic -8124 ENSMUSG00000065894.1 ENSMUSG00000065894 ENSMUST00000083960 n-R5s46 rRNA Interval_97862 chr2 144527072 144528179 + 0 NA promoter-TSS (ENSMUSG00000027427.13) protein_coding-promoter-TSS (ENSMUSG00000027427.13) -155 ENSMUSG00000027427.13 ENSMUSG00000027427 ENSMUST00000134051 Polr3f protein_coding Interval_155093 chr8 26392300 26393098 + 0 NA Intergenic Intergenic 43014 ENSMUSG00000109996.1 ENSMUSG00000109996 ENSMUST00000209232 Gm31898 lincRNA Interval_155698 chr8 36232663 36233144 + 0 NA intron (ENSMUSG00000039633.7, intron 3 of 11) protein_coding-intron (ENSMUSG00000039633.7, intron 3 of 11) 16613 ENSMUSG00000039633.7 ENSMUSG00000039633 ENSMUST00000065297 Lonrf1 protein_coding Interval_49172 chr13 109116088 109117871 + 0 NA exon (ENSMUSG00000021699.17, exon 1 of 15) protein_coding-exon (ENSMUSG00000021699.17, exon 1 of 15) -207765 ENSMUSG00000076946.2 ENSMUSG00000076946 ENSMUST00000103758 Mir582 miRNA Interval_390 chr1 4841827 4842833 + 0 NA exon (ENSMUSG00000025903.14, exon 2 of 2) protein_coding-exon (ENSMUSG00000025903.14, exon 2 of 2) -15708 ENSMUSG00000033813.15 ENSMUSG00000033813 ENSMUST00000165720 Tcea1 protein_coding Interval_31970 chr11 104242867 104243502 + 0 NA intron (ENSMUSG00000018411.17, intron 1 of 5) protein_coding-intron (ENSMUSG00000018411.17, intron 1 of 11) 7960 ENSMUSG00000065379.1 ENSMUSG00000065379 ENSMUST00000083445 Gm22743 snoRNA Interval_53258 chr14 55623815 55624269 + 0 NA promoter-TSS (ENSMUSG00000002324.8) protein_coding-promoter-TSS (ENSMUSG00000002324.8) 544 ENSMUSG00000002324.8 ENSMUSG00000002324 ENSMUST00000155193 Rec8 protein_coding Interval_163721 chr9 24898188 24898645 + 0 NA Intergenic Intergenic -54557 ENSMUSG00000110872.1 ENSMUSG00000110872 ENSMUST00000217324 Gm48255 processed_pseudogene Interval_92135 chr2 53848082 53848275 + 0 NA Intergenic Intergenic -147223 ENSMUSG00000088628.1 ENSMUSG00000088628 ENSMUST00000158003 Gm23315 snoRNA Interval_25683 chr11 50755307 50755522 + 0 NA intron (ENSMUSG00000036545.9, intron 4 of 20) protein_coding-intron (ENSMUSG00000036545.9, intron 4 of 21) -29870 ENSMUSG00000085902.1 ENSMUSG00000085902 ENSMUST00000144876 Gm12200 antisense Interval_113055 chr4 47250821 47251500 + 0 NA intron (ENSMUSG00000028339.17, intron 5 of 39) protein_coding-intron (ENSMUSG00000028339.17, intron 5 of 38) -7375 ENSMUSG00000028339.17 ENSMUSG00000028339 ENSMUST00000107730 Col15a1 protein_coding Interval_168591 chr9 83956741 83957813 + 0 NA intron (ENSMUSG00000032263.14, intron 3 of 10) protein_coding-intron (ENSMUSG00000032263.14, intron 3 of 10) 9730 ENSMUSG00000101077.1 ENSMUSG00000101077 ENSMUST00000185454 Gm29164 processed_pseudogene Interval_50604 chr14 16434366 16435287 + 0 NA TTS (ENSMUSG00000017491.9) protein_coding-TTS (ENSMUSG00000017491.9) 11640 ENSMUSG00000017485.11 ENSMUSG00000017485 ENSMUST00000224460 Top2b protein_coding Interval_146234 chr7 44878222 44878814 + 0 NA TTS (ENSMUSG00000002968.9) protein_coding-TTS (ENSMUSG00000002968.9) 6192 ENSMUSG00000002968.9 ENSMUSG00000002968 ENSMUST00000207196 Med25 protein_coding Interval_102055 chr3 16205020 16205302 + 0 NA exon (ENSMUSG00000047213.14, exon 4 of 5) protein_coding-exon (ENSMUSG00000047213.14, exon 4 of 5) 21925 ENSMUSG00000047213.14 ENSMUSG00000047213 ENSMUST00000108346 Ythdf3 protein_coding Interval_160088 chr8 106297240 106297510 + 0 NA intron (ENSMUSG00000031906.9, intron 1 of 8) protein_coding-intron (ENSMUSG00000031906.9, intron 1 of 8) 14068 ENSMUSG00000074113.4 ENSMUSG00000074113 ENSMUST00000137706 Gm10629 lincRNA Interval_44788 chr13 48655726 48656077 + 0 NA Intergenic Intergenic -7097 ENSMUSG00000021381.4 ENSMUSG00000021381 ENSMUST00000021813 Barx1 protein_coding Interval_53338 chr14 56392955 56394107 + 0 NA Intergenic Intergenic -1969 ENSMUSG00000114345.1 ENSMUSG00000114345 ENSMUST00000225567 Gm10873 antisense Interval_57715 chr15 16462843 16464335 + 0 NA Intergenic Intergenic 33223 ENSMUSG00000115614.1 ENSMUSG00000115614 ENSMUST00000227529 Gm41276 lincRNA Interval_41665 chr12 117582486 117583308 + 0 NA intron (ENSMUSG00000041992.9, intron 4 of 8) protein_coding-intron (ENSMUSG00000041992.9, intron 6 of 27) 8555 ENSMUSG00000089482.1 ENSMUSG00000089482 ENSMUST00000158857 Gm24741 rRNA Interval_148849 chr7 89272973 89273387 + 0 NA intron (ENSMUSG00000039428.11, intron 2 of 5) protein_coding-intron (ENSMUSG00000039428.11, intron 4 of 14) 18119 ENSMUSG00000094780.1 ENSMUSG00000094780 ENSMUST00000180212 Gm24659 miRNA Interval_49333 chr13 111233548 111233758 + 0 NA Intergenic Intergenic -4222 ENSMUSG00000114824.1 ENSMUSG00000114824 ENSMUST00000225326 3110015C05Rik lincRNA Interval_70886 chr17 15631929 15632338 + 0 NA intron (ENSMUSG00000116924.1, intron 2 of 3) lincRNA-intron (ENSMUSG00000116924.1, intron 2 of 3) 345 ENSMUSG00000116924.1 ENSMUSG00000116924 ENSMUST00000231822 4933401D09Rik lincRNA Interval_127585 chr5 105609342 105610252 + 0 NA exon (ENSMUSG00000054720.12, exon 4 of 4) protein_coding-exon (ENSMUSG00000054720.12, exon 4 of 4) 29357 ENSMUSG00000085771.1 ENSMUSG00000085771 ENSMUST00000150195 C230066G23Rik sense_intronic Interval_135046 chr6 34936439 34937113 + 0 NA intron (ENSMUSG00000029848.11, intron 7 of 8) protein_coding-intron (ENSMUSG00000029848.11, intron 8 of 9) 15772 ENSMUSG00000029848.11 ENSMUSG00000029848 ENSMUST00000114997 Stra8 protein_coding Interval_145496 chr7 35203188 35204843 + 0 NA promoter-TSS (ENSMUSG00000001802.16) protein_coding-promoter-TSS (ENSMUSG00000001802.16) -790 ENSMUSG00000001802.16 ENSMUSG00000001802 ENSMUST00000118444 Lrp3 protein_coding Interval_96491 chr2 125064856 125065352 + 0 NA Intergenic Intergenic -15251 ENSMUSG00000035183.14 ENSMUSG00000035183 ENSMUST00000149963 Slc24a5 protein_coding Interval_122802 chr5 25632149 25633087 + 0 NA Intergenic Intergenic -27191 ENSMUSG00000106144.1 ENSMUSG00000106144 ENSMUST00000181398 Gm43972 lincRNA Interval_77973 chr18 6280830 6282815 + 0 NA Intergenic Intergenic -40686 ENSMUSG00000006740.14 ENSMUSG00000006740 ENSMUST00000170959 Kif5b protein_coding Interval_1557 chr1 25887642 25888688 + 0 NA Intergenic Intergenic 57508 ENSMUSG00000104516.1 ENSMUSG00000104516 ENSMUST00000194343 Gm9884 TEC Interval_99399 chr2 160601359 160602868 + 0 NA intron (ENSMUSG00000078956.3, intron 1 of 2) lincRNA-intron (ENSMUSG00000078956.3, intron 1 of 2) 17858 ENSMUSG00000078956.3 ENSMUSG00000078956 ENSMUST00000209603 Gm14221 lincRNA Interval_39616 chr12 91577470 91578226 + 0 NA intron (ENSMUSG00000020962.14, intron 2 of 8) protein_coding-intron (ENSMUSG00000020962.14, intron 2 of 8) -4276 ENSMUSG00000080365.1 ENSMUSG00000080365 ENSMUST00000116715 Gm25776 snoRNA Interval_70226 chr17 6827428 6829089 + 0 NA Intergenic Intergenic 19749 ENSMUSG00000116644.1 ENSMUSG00000116644 ENSMUST00000231816 4933426B08Rik lincRNA Interval_118027 chr4 128438948 128440045 + 0 NA intron (ENSMUSG00000028804.20, intron 25 of 70) protein_coding-intron (ENSMUSG00000028804.20, intron 25 of 70) -113079 ENSMUSG00000028804.20 ENSMUSG00000028804 ENSMUST00000221199 Csmd2 protein_coding Interval_129202 chr5 118160596 118162098 + 0 NA Intergenic Intergenic -3301 ENSMUSG00000046607.6 ENSMUSG00000046607 ENSMUST00000054836 Hrk protein_coding Interval_93584 chr2 74667247 74669031 + 0 NA promoter-TSS (ENSMUSG00000001819.4) protein_coding-promoter-TSS (ENSMUSG00000001819.4) -171 ENSMUSG00000001819.4 ENSMUSG00000001819 ENSMUST00000001872 Hoxd13 protein_coding Interval_38227 chr12 76486863 76487174 + 0 NA Intergenic Intergenic -5337 ENSMUSG00000112167.1 ENSMUSG00000112167 ENSMUST00000218608 Gm47053 processed_pseudogene Interval_93371 chr2 72471607 72471889 + 0 NA Intergenic Intergenic -4505 ENSMUSG00000055612.15 ENSMUSG00000055612 ENSMUST00000137880 Cdca7 protein_coding Interval_95057 chr2 103565262 103567458 + 0 NA promoter-TSS (ENSMUSG00000032724.5) protein_coding-promoter-TSS (ENSMUSG00000032724.5) 19101 ENSMUSG00000081687.1 ENSMUSG00000081687 ENSMUST00000118456 Gm13996 processed_pseudogene Interval_55801 chr14 100284302 100287034 + 0 NA promoter-TSS (ENSMUSG00000110273.1) lincRNA-promoter-TSS (ENSMUSG00000110273.1) -497 ENSMUSG00000110273.1 ENSMUSG00000110273 ENSMUST00000211525 Gm41231 lincRNA Interval_122612 chr5 24203381 24204843 + 0 NA Intergenic Intergenic 5612 ENSMUSG00000099891.1 ENSMUSG00000099891 ENSMUST00000190879 Gm5575 processed_pseudogene Interval_126675 chr5 91985670 91986242 + 0 NA Intergenic Intergenic -1519 ENSMUSG00000096035.2 ENSMUSG00000096035 ENSMUST00000178614 Odaph protein_coding Interval_58950 chr15 40627426 40628489 + 0 NA Intergenic Intergenic -27394 ENSMUSG00000022306.9 ENSMUSG00000022306 ENSMUST00000230319 Zfpm2 protein_coding Interval_161388 chr8 120177119 120178107 + 0 NA promoter-TSS (ENSMUSG00000042269.15) protein_coding-promoter-TSS (ENSMUSG00000042269.15) -250 ENSMUSG00000042269.15 ENSMUSG00000042269 ENSMUST00000142478 Fam92b protein_coding Interval_37485 chr12 69306341 69306615 + 0 NA exon (ENSMUSG00000020978.10, exon 6 of 6) protein_coding-exon (ENSMUSG00000020978.10, exon 6 of 6) 4077 ENSMUSG00000020978.10 ENSMUSG00000020978 ENSMUST00000154667 Klhdc2 protein_coding Interval_164390 chr9 36700888 36701203 + 0 NA Intergenic Intergenic 7791 ENSMUSG00000032110.4 ENSMUSG00000032110 ENSMUST00000184160 Acrv1 protein_coding Interval_30483 chr11 94653205 94654405 + 0 NA promoter-TSS (ENSMUSG00000024414.13) protein_coding-promoter-TSS (ENSMUSG00000024414.13) 29 ENSMUSG00000024414.13 ENSMUSG00000024414 ENSMUST00000125148 Mrpl27 protein_coding Interval_18699 chr10 89424354 89425601 + 0 NA intron (ENSMUSG00000074802.11, intron 4 of 5) protein_coding-intron (ENSMUSG00000074802.11, intron 7 of 10) 8865 ENSMUSG00000074802.11 ENSMUSG00000074802 ENSMUST00000219073 Gas2l3 protein_coding Interval_114366 chr4 74329497 74329748 + 0 NA intron (ENSMUSG00000028397.13, intron 7 of 7) protein_coding-intron (ENSMUSG00000028397.13, intron 8 of 21) 66813 ENSMUSG00000028397.13 ENSMUSG00000028397 ENSMUST00000150439 Kdm4c protein_coding Interval_158937 chr8 88107993 88108436 + 0 NA Intergenic Intergenic -1572 ENSMUSG00000118626.1 ENSMUSG00000118626 ENSMUST00000239289 AC127285.1 processed_pseudogene Interval_153927 chr8 11253371 11254031 + 0 NA intron (ENSMUSG00000031502.11, intron 2 of 52) protein_coding-intron (ENSMUSG00000031502.11, intron 2 of 51) 37566 ENSMUSG00000109358.1 ENSMUSG00000109358 ENSMUST00000209007 Gm44716 TEC Interval_168494 chr9 82534760 82535202 + 0 NA Intergenic Intergenic 9990 ENSMUSG00000098420.1 ENSMUSG00000098420 ENSMUST00000185049 Gm27249 processed_pseudogene Interval_77592 chr17 92644706 92644914 + 0 NA Intergenic Intergenic -44284 ENSMUSG00000117354.1 ENSMUSG00000117354 ENSMUST00000234942 Gm49995 processed_pseudogene Interval_130994 chr5 134455300 134457417 + 0 NA promoter-TSS (ENSMUSG00000023079.14) protein_coding-promoter-TSS (ENSMUSG00000023079.14) 368 ENSMUSG00000106969.1 ENSMUSG00000106969 ENSMUST00000201788 Gm42882 antisense Interval_158325 chr8 81341464 81343226 + 0 NA promoter-TSS (ENSMUSG00000037940.17) protein_coding-promoter-TSS (ENSMUSG00000037940.17) -217 ENSMUSG00000037940.17 ENSMUSG00000037940 ENSMUST00000165821 Inpp4b protein_coding Interval_164808 chr9 42053997 42055234 + 0 NA intron (ENSMUSG00000049313.8, intron 12 of 47) protein_coding-intron (ENSMUSG00000049313.8, intron 12 of 47) 32000 ENSMUSG00000086360.1 ENSMUSG00000086360 ENSMUST00000143710 Gm16214 antisense Interval_79429 chr18 31844807 31845316 + 0 NA intron (ENSMUSG00000024400.16, intron 7 of 21) protein_coding-intron (ENSMUSG00000024400.16, intron 7 of 21) -24542 ENSMUSG00000091561.3 ENSMUSG00000091561 ENSMUST00000165131 Gm6665 processed_pseudogene Interval_12450 chr1 193547208 193547869 + 0 NA Intergenic Intergenic -37364 ENSMUSG00000097850.2 ENSMUSG00000097850 ENSMUST00000180420 Mir205hg lincRNA Interval_157754 chr8 72749129 72750632 + 0 NA exon (ENSMUSG00000031622.16, exon 13 of 19) protein_coding-exon (ENSMUSG00000031622.16, exon 13 of 19) 9029 ENSMUSG00000031622.16 ENSMUSG00000031622 ENSMUST00000212677 Sin3b protein_coding Interval_113843 chr4 59285432 59285651 + 0 NA Intergenic Intergenic 25490 ENSMUSG00000086952.1 ENSMUSG00000086952 ENSMUST00000124589 Gm12596 lincRNA Interval_145634 chr7 36601902 36602948 + 0 NA Intergenic Intergenic 33682 ENSMUSG00000101965.1 ENSMUSG00000101965 ENSMUST00000191121 Gm29129 lincRNA Interval_57334 chr15 8848965 8849893 + 0 NA Intergenic Intergenic -65055 ENSMUSG00000107028.1 ENSMUSG00000107028 ENSMUST00000202103 Gm5043 processed_pseudogene Interval_35758 chr12 28974599 28975152 + 0 NA intron (ENSMUSG00000113387.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000113387.1, intron 1 of 2) 60419 ENSMUSG00000089583.1 ENSMUSG00000089583 ENSMUST00000158958 Gm23342 rRNA Interval_132161 chr5 143015738 143016134 + 0 NA exon (ENSMUSG00000045078.12, exon 1 of 1) protein_coding-exon (ENSMUSG00000045078.12, exon 1 of 1) 34107 ENSMUSG00000106543.1 ENSMUSG00000106543 ENSMUST00000199336 Gm43378 sense_intronic Interval_18464 chr10 86339386 86340276 + 0 NA intron (ENSMUSG00000020044.13, intron 2 of 2) protein_coding-intron (ENSMUSG00000020044.13, intron 2 of 4) 39277 ENSMUSG00000020044.13 ENSMUSG00000020044 ENSMUST00000132307 Timp3 protein_coding Interval_144525 chr7 25686445 25689943 + 0 NA promoter-TSS (ENSMUSG00000002603.15) protein_coding-promoter-TSS (ENSMUSG00000002603.15) 46 ENSMUSG00000002603.15 ENSMUSG00000002603 ENSMUST00000171757 Tgfb1 protein_coding Interval_90318 chr2 29750275 29751988 + 0 NA intron (ENSMUSG00000079497.4, intron 1 of 3) protein_coding-intron (ENSMUSG00000079497.4, intron 1 of 3) 554 ENSMUSG00000079497.4 ENSMUSG00000079497 ENSMUST00000129574 Gm13420 protein_coding Interval_147382 chr7 66300633 66301132 + 0 NA exon (ENSMUSG00000015133.17, exon 12 of 34) protein_coding-exon (ENSMUSG00000015133.17, exon 12 of 34) -8313 ENSMUSG00000109119.1 ENSMUSG00000109119 ENSMUST00000207140 Gm44752 antisense Interval_171759 chr9 120765394 120765864 + 0 NA Intergenic Intergenic -10103 ENSMUSG00000110726.1 ENSMUSG00000110726 ENSMUST00000215769 Gm18101 processed_pseudogene Interval_95463 chr2 109842811 109844481 + 0 NA Intergenic Intergenic -47224 ENSMUSG00000027162.7 ENSMUSG00000027162 ENSMUST00000151163 Lin7c protein_coding Interval_974 chr1 13589002 13590581 + 0 NA promoter-TSS (ENSMUSG00000025935.10) protein_coding-promoter-TSS (ENSMUSG00000025935.10) 84 ENSMUSG00000025935.10 ENSMUSG00000025935 ENSMUST00000188377 Tram1 protein_coding Interval_62620 chr15 95695521 95695970 + 0 NA Intergenic Intergenic -19448 ENSMUSG00000116058.1 ENSMUSG00000116058 ENSMUST00000230585 Gm8843 processed_pseudogene Interval_73705 chr17 42893771 42894407 + 0 NA Intergenic Intergenic -63059 ENSMUSG00000061665.7 ENSMUSG00000061665 ENSMUST00000233626 Cd2ap protein_coding Interval_60595 chr15 75583739 75583941 + 0 NA Intergenic Intergenic -12828 ENSMUSG00000022579.10 ENSMUSG00000022579 ENSMUST00000186934 Gpihbp1 protein_coding Interval_138965 chr6 93866503 93866705 + 0 NA intron (ENSMUSG00000045095.16, intron 2 of 24) protein_coding-intron (ENSMUSG00000045095.16, intron 2 of 21) -24011 ENSMUSG00000089069.1 ENSMUSG00000089069 ENSMUST00000158444 Gm22840 snoRNA Interval_117883 chr4 126859725 126860485 + 0 NA TTS (ENSMUSG00000088984.1) snoRNA-TTS (ENSMUSG00000088984.1) 1007 ENSMUSG00000088984.1 ENSMUSG00000088984 ENSMUST00000158359 Gm25604 snoRNA Interval_78310 chr18 11897063 11897584 + 0 NA intron (ENSMUSG00000040957.15, intron 3 of 8) protein_coding-intron (ENSMUSG00000040957.15, intron 3 of 8) -15808 ENSMUSG00000117430.1 ENSMUSG00000117430 ENSMUST00000234828 Gm49968 TEC Interval_128955 chr5 116304894 116305833 + 0 NA TTS (ENSMUSG00000084921.1) lincRNA-TTS (ENSMUSG00000084921.1) 3997 ENSMUSG00000084921.1 ENSMUSG00000084921 ENSMUST00000132130 Gm13838 lincRNA Interval_119823 chr4 140214575 140215046 + 0 NA intron (ENSMUSG00000040972.8, intron 1 of 9) protein_coding-intron (ENSMUSG00000040972.8, intron 1 of 9) 31974 ENSMUSG00000040972.8 ENSMUSG00000040972 ENSMUST00000039331 Igsf21 protein_coding Interval_144330 chr7 24515507 24517808 + 0 NA TTS (ENSMUSG00000064264.14) protein_coding-TTS (ENSMUSG00000064264.14) -4202 ENSMUSG00000117477.1 ENSMUSG00000117477 ENSMUST00000234781 Gm50092 protein_coding Interval_80208 chr18 38268848 38269177 + 0 NA exon (ENSMUSG00000024440.13, exon 4 of 4) protein_coding-exon (ENSMUSG00000024440.13, exon 4 of 4) 8947 ENSMUSG00000024440.13 ENSMUSG00000024440 ENSMUST00000193123 Pcdh12 protein_coding Interval_53234 chr14 55478594 55479408 + 0 NA promoter-TSS (ENSMUSG00000022210.7) protein_coding-promoter-TSS (ENSMUSG00000022210.7) 67 ENSMUSG00000022210.7 ENSMUSG00000022210 ENSMUST00000227542 Dhrs4 protein_coding Interval_57331 chr15 8834091 8834548 + 0 NA Intergenic Intergenic -80165 ENSMUSG00000107028.1 ENSMUSG00000107028 ENSMUST00000202103 Gm5043 processed_pseudogene Interval_159646 chr8 95986932 95987672 + 0 NA Intergenic Intergenic 65773 ENSMUSG00000110506.1 ENSMUSG00000110506 ENSMUST00000212919 Gm8637 processed_pseudogene Interval_72267 chr17 28888757 28889018 + 0 NA exon (ENSMUSG00000043286.12, exon 10 of 10) protein_coding-exon (ENSMUSG00000043286.12, exon 10 of 10) -16378 ENSMUSG00000085333.1 ENSMUSG00000085333 ENSMUST00000125317 1700030A11Rik antisense Interval_99666 chr2 164059818 164060020 + 0 NA intron (ENSMUSG00000018322.10, intron 4 of 6) protein_coding-intron (ENSMUSG00000018322.10, intron 4 of 6) 5796 ENSMUSG00000018322.10 ENSMUSG00000018322 ENSMUST00000109384 Tomm34 protein_coding Interval_171008 chr9 113688629 113689103 + 0 NA intron (ENSMUSG00000032504.15, intron 3 of 3) protein_coding-intron (ENSMUSG00000032504.15, intron 5 of 17) 8711 ENSMUSG00000032504.15 ENSMUSG00000032504 ENSMUST00000156425 Pdcd6ip protein_coding Interval_174140 chrX 136180630 136181596 + 0 NA Intergenic Intergenic -2132 ENSMUSG00000098493.1 ENSMUSG00000098493 ENSMUST00000184545 Mir6383 miRNA Interval_125965 chr5 76303591 76305328 + 0 NA promoter-TSS (ENSMUSG00000029238.11) protein_coding-promoter-TSS (ENSMUSG00000029238.11) 295 ENSMUSG00000029238.11 ENSMUSG00000029238 ENSMUST00000201052 Clock protein_coding Interval_92932 chr2 68767437 68768800 + 0 NA Intergenic Intergenic 51827 ENSMUSG00000079324.11 ENSMUSG00000079324 ENSMUST00000135023 4932414N04Rik protein_coding Interval_6761 chr1 119318091 119318387 + 0 NA intron (ENSMUSG00000099860.1, intron 1 of 3) lincRNA-intron (ENSMUSG00000099860.1, intron 1 of 3) 8594 ENSMUSG00000099860.1 ENSMUSG00000099860 ENSMUST00000189894 Gm29456 lincRNA Interval_140587 chr6 119885826 119886028 + 0 NA Intergenic Intergenic -6993 ENSMUSG00000080719.1 ENSMUSG00000080719 ENSMUST00000121192 Gm15532 processed_pseudogene Interval_23729 chr11 25460201 25460541 + 0 NA Intergenic Intergenic 159108 ENSMUSG00000086439.1 ENSMUSG00000086439 ENSMUST00000145127 Gm12069 lincRNA Interval_81183 chr18 56015278 56016582 + 0 NA Intergenic Intergenic -28403 ENSMUSG00000088617.1 ENSMUSG00000088617 ENSMUST00000157992 Gm22484 misc_RNA Interval_133731 chr6 10543977 10544221 + 0 NA Intergenic Intergenic 209803 ENSMUSG00000107762.1 ENSMUSG00000107762 ENSMUST00000204122 Gm18421 processed_pseudogene Interval_117410 chr4 123543435 123544139 + 0 NA intron (ENSMUSG00000028649.21, intron 3 of 93) protein_coding-intron (ENSMUSG00000028649.21, intron 3 of 92) 53556 ENSMUSG00000089588.1 ENSMUSG00000089588 ENSMUST00000158963 Gm23548 misc_RNA Interval_119417 chr4 137549512 137550053 + 0 NA intron (ENSMUSG00000028763.18, intron 65 of 96) protein_coding-intron (ENSMUSG00000028763.18, intron 65 of 96) 11496 ENSMUSG00000099134.1 ENSMUSG00000099134 ENSMUST00000184284 Mir7018 miRNA Interval_36212 chr12 39565481 39566102 + 0 NA Intergenic Intergenic -38836 ENSMUSG00000113343.1 ENSMUSG00000113343 ENSMUST00000222673 Gm34923 lincRNA Interval_81931 chr18 65964674 65965552 + 0 NA intron (ENSMUSG00000024519.6, intron 1 of 1) protein_coding-intron (ENSMUSG00000024519.6, intron 2 of 2) 2569 ENSMUSG00000024519.6 ENSMUSG00000024519 ENSMUST00000236894 Cplx4 protein_coding Interval_172113 chrX 7679666 7680920 + 0 NA intron (ENSMUSG00000031147.8, intron 1 of 5) protein_coding-intron (ENSMUSG00000031147.8, intron 1 of 5) 958 ENSMUSG00000031147.8 ENSMUSG00000031147 ENSMUST00000115695 Magix protein_coding Interval_164721 chr9 40800331 40801893 + 0 NA promoter-TSS (ENSMUSG00000015656.17) protein_coding-promoter-TSS (ENSMUSG00000015656.17) -2471 ENSMUSG00000096263.1 ENSMUSG00000096263 ENSMUST00000101927 Snord14c snoRNA Interval_124933 chr5 61049328 61049854 + 0 NA Intergenic Intergenic -103942 ENSMUSG00000105903.1 ENSMUSG00000105903 ENSMUST00000199566 1700014F14Rik lincRNA Interval_98485 chr2 152729779 152730044 + 0 NA Intergenic Intergenic -6340 ENSMUSG00000042745.9 ENSMUSG00000042745 ENSMUST00000109824 Id1 protein_coding Interval_90196 chr2 28961278 28961987 + 0 NA intron (ENSMUSG00000079502.8, intron 4 of 5) protein_coding-intron (ENSMUSG00000079502.8, intron 4 of 5) -27023 ENSMUSG00000083773.4 ENSMUSG00000083773 ENSMUST00000121658 Gm13394 processed_pseudogene Interval_31976 chr11 104278137 104279009 + 0 NA intron (ENSMUSG00000018411.17, intron 1 of 5) protein_coding-intron (ENSMUSG00000018411.17, intron 1 of 11) -19212 ENSMUSG00000085134.1 ENSMUSG00000085134 ENSMUST00000137561 Gm11659 antisense Interval_127515 chr5 104789915 104790256 + 0 NA Intergenic Intergenic 14306 ENSMUSG00000048334.8 ENSMUSG00000048334 ENSMUST00000055593 Gm8258 processed_pseudogene Interval_149236 chr7 96530683 96531598 + 0 NA intron (ENSMUSG00000048078.16, intron 1 of 2) protein_coding-intron (ENSMUSG00000048078.16, intron 4 of 32) -95123 ENSMUSG00000082780.2 ENSMUSG00000082780 ENSMUST00000117302 Rps11-ps5 processed_pseudogene Interval_36227 chr12 39997366 39998840 + 0 NA Intergenic Intergenic 39326 ENSMUSG00000047446.18 ENSMUSG00000047446 ENSMUST00000101472 Arl4a protein_coding Interval_11422 chr1 181860243 181861509 + 0 NA Intergenic Intergenic -7687 ENSMUSG00000056699.7 ENSMUSG00000056699 ENSMUST00000070987 Gm5533 lincRNA Interval_41758 chr12 118766177 118767179 + 0 NA Intergenic Intergenic -8595 ENSMUSG00000113633.1 ENSMUSG00000113633 ENSMUST00000221076 Gm29689 processed_pseudogene Interval_150714 chr7 113675041 113675303 + 0 NA Intergenic Intergenic -8156 ENSMUSG00000089467.1 ENSMUSG00000089467 ENSMUST00000158842 Gm23700 miRNA Interval_138281 chr6 86870299 86870586 + 0 NA intron (ENSMUSG00000057230.14, intron 1 of 2) protein_coding-intron (ENSMUSG00000057230.14, intron 1 of 19) -3344 ENSMUSG00000108152.1 ENSMUSG00000108152 ENSMUST00000205007 Gm44152 TEC Interval_99845 chr2 165267890 165268126 + 0 NA Intergenic Intergenic 2168 ENSMUSG00000087800.1 ENSMUSG00000087800 ENSMUST00000157175 Gm25569 snoRNA Interval_150586 chr7 112656308 112656768 + 0 NA intron (ENSMUSG00000085945.3, intron 2 of 3) bidirectional_promoter_lncRNA-intron (ENSMUSG00000085945.3, intron 2 of 3) 3756 ENSMUSG00000109611.1 ENSMUSG00000109611 ENSMUST00000211452 Gm45473 processed_pseudogene Interval_107854 chr3 116300507 116301331 + 0 NA intron (ENSMUSG00000033502.15, intron 11 of 14) protein_coding-intron (ENSMUSG00000033502.15, intron 11 of 15) -47456 ENSMUSG00000068696.6 ENSMUSG00000068696 ENSMUST00000199128 Gpr88 protein_coding Interval_20113 chr10 114956598 114956877 + 0 NA Intergenic Intergenic 8806 ENSMUSG00000112016.1 ENSMUSG00000112016 ENSMUST00000218941 Gm31267 lincRNA Interval_19048 chr10 94072713 94073363 + 0 NA intron (ENSMUSG00000020021.4, intron 1 of 2) protein_coding-intron (ENSMUSG00000020021.4, intron 2 of 20) 496 ENSMUSG00000020021.4 ENSMUSG00000020021 ENSMUST00000125535 Fgd6 protein_coding Interval_157880 chr8 75169882 75171252 + 0 NA Intergenic Intergenic -5891 ENSMUSG00000110693.1 ENSMUSG00000110693 ENSMUST00000212196 Gm45899 lincRNA Interval_85879 chr19 32663096 32663706 + 0 NA intron (ENSMUSG00000024899.7, intron 10 of 11) protein_coding-intron (ENSMUSG00000024899.7, intron 11 of 12) 31469 ENSMUSG00000013662.6 ENSMUSG00000013662 ENSMUST00000237933 Atad1 protein_coding Interval_36751 chr12 53025572 53025793 + 0 NA intron (ENSMUSG00000061603.8, intron 7 of 11) protein_coding-intron (ENSMUSG00000061603.8, intron 8 of 13) 21144 ENSMUSG00000070192.1 ENSMUSG00000070192 ENSMUST00000093682 n-R5s58 rRNA Interval_61445 chr15 81666906 81667953 + 0 NA exon (ENSMUSG00000022394.14, exon 2 of 16) protein_coding-exon (ENSMUSG00000022394.14, exon 2 of 16) 7449 ENSMUSG00000092325.2 ENSMUSG00000092325 ENSMUST00000172604 Gm18284 processed_pseudogene Interval_124889 chr5 59511279 59511467 + 0 NA promoter-TSS (ENSMUSG00000105038.1) processed_pseudogene-promoter-TSS (ENSMUSG00000105038.1) -592 ENSMUSG00000105038.1 ENSMUSG00000105038 ENSMUST00000198091 Gm43044 processed_pseudogene Interval_58607 chr15 36525607 36526007 + 0 NA intron (ENSMUSG00000013611.14, intron 9 of 13) protein_coding-intron (ENSMUSG00000013611.14, intron 9 of 13) 19880 ENSMUSG00000013611.14 ENSMUSG00000013611 ENSMUST00000160936 Snx31 protein_coding Interval_14276 chr10 30261335 30261779 + 0 NA Intergenic Intergenic -61065 ENSMUSG00000075266.5 ENSMUSG00000075266 ENSMUST00000099985 Cenpw protein_coding Interval_62576 chr15 94811584 94811849 + 0 NA intron (ENSMUSG00000063296.5, intron 3 of 7) protein_coding-intron (ENSMUSG00000063296.5, intron 3 of 7) -130330 ENSMUSG00000095169.1 ENSMUSG00000095169 ENSMUST00000103977 Gm25546 snoRNA Interval_83876 chr19 5287441 5287725 + 0 NA promoter-TSS (ENSMUSG00000024853.10) protein_coding-promoter-TSS (ENSMUSG00000024853.10) -3175 ENSMUSG00000024853.10 ENSMUSG00000024853 ENSMUST00000237512 Sf3b2 protein_coding Interval_131527 chr5 137751346 137752206 + 0 NA exon (ENSMUSG00000029723.16, exon 3 of 3) protein_coding-exon (ENSMUSG00000029723.16, exon 3 of 3) -6369 ENSMUSG00000029723.16 ENSMUSG00000029723 ENSMUST00000138698 Tsc22d4 protein_coding Interval_6628 chr1 118401799 118403199 + 0 NA intron (ENSMUSG00000064302.13, intron 1 of 38) protein_coding-intron (ENSMUSG00000064302.13, intron 1 of 39) 45187 ENSMUSG00000099936.1 ENSMUSG00000099936 ENSMUST00000190194 Gm28867 lincRNA Interval_42373 chr13 12437611 12438668 + 0 NA intron (ENSMUSG00000050244.9, intron 15 of 16) protein_coding-intron (ENSMUSG00000050244.9, intron 44 of 44) -12534 ENSMUSG00000113931.1 ENSMUSG00000113931 ENSMUST00000221839 Gm5928 processed_pseudogene Interval_39141 chr12 85397261 85398163 + 0 NA Intergenic Intergenic -23022 ENSMUSG00000021248.9 ENSMUSG00000021248 ENSMUST00000223375 Tmed10 protein_coding Interval_40630 chr12 106114946 106115504 + 0 NA Intergenic Intergenic -16254 ENSMUSG00000113390.1 ENSMUSG00000113390 ENSMUST00000221493 Gm32635 lincRNA Interval_161735 chr8 122428345 122428574 + 0 NA exon (ENSMUSG00000006519.11, exon 2 of 6) protein_coding-exon (ENSMUSG00000006519.11, exon 2 of 6) 4446 ENSMUSG00000006519.11 ENSMUSG00000006519 ENSMUST00000212822 Cyba protein_coding Interval_2129 chr1 36615592 36616269 + 0 NA intron (ENSMUSG00000046337.17, intron 6 of 14) protein_coding-intron (ENSMUSG00000046337.17, intron 6 of 9) 14128 ENSMUSG00000089906.1 ENSMUSG00000089906 ENSMUST00000161062 Gm6428 processed_pseudogene Interval_164516 chr9 37626987 37627779 + 0 NA intron (ENSMUSG00000001942.8, intron 3 of 6) protein_coding-intron (ENSMUSG00000001942.8, intron 2 of 8) 13556 ENSMUSG00000001942.8 ENSMUSG00000001942 ENSMUST00000213964 Siae protein_coding Interval_80035 chr18 36782757 36783772 + 0 NA promoter-TSS (ENSMUSG00000001380.7) protein_coding-promoter-TSS (ENSMUSG00000001380.7) -144 ENSMUSG00000001380.7 ENSMUSG00000001380 ENSMUST00000235863 Hars protein_coding Interval_41453 chr12 114284716 114284961 + 0 NA Intergenic Intergenic 3744 ENSMUSG00000076672.7 ENSMUSG00000076672 ENSMUST00000103481 Ighv3-6 IG_V_gene Interval_149134 chr7 94439377 94440174 + 0 NA intron (ENSMUSG00000108532.1, intron 2 of 2) lincRNA-intron (ENSMUSG00000108532.1, intron 2 of 2) -35805 ENSMUSG00000108516.1 ENSMUSG00000108516 ENSMUST00000205948 Gm44602 processed_pseudogene Interval_93513 chr2 73698136 73698348 + 0 NA intron (ENSMUSG00000056486.18, intron 5 of 9) protein_coding-intron (ENSMUSG00000056486.18, intron 5 of 12) 39972 ENSMUSG00000085838.1 ENSMUSG00000085838 ENSMUST00000123613 Chn1os1 antisense Interval_123278 chr5 31081030 31083059 + 0 NA Intergenic Intergenic 7927 ENSMUSG00000013629.16 ENSMUSG00000013629 ENSMUST00000200917 Cad protein_coding Interval_56574 chr14 120418908 120419384 + 0 NA intron (ENSMUSG00000022139.17, intron 8 of 8) protein_coding-intron (ENSMUSG00000022139.17, intron 8 of 8) -30161 ENSMUSG00000097903.2 ENSMUSG00000097903 ENSMUST00000181685 Gm26679 antisense Interval_114735 chr4 84620137 84622009 + 0 NA intron (ENSMUSG00000028487.18, intron 1 of 5) protein_coding-intron (ENSMUSG00000028487.18, intron 1 of 7) -76790 ENSMUSG00000081775.1 ENSMUSG00000081775 ENSMUST00000119869 Gm12420 processed_pseudogene Interval_126462 chr5 88701638 88702218 + 0 NA Intergenic Intergenic -18927 ENSMUSG00000006262.15 ENSMUSG00000006262 ENSMUST00000125171 Mob1b protein_coding Interval_98089 chr2 147847280 147847491 + 0 NA Intergenic Intergenic 27493 ENSMUSG00000065791.1 ENSMUSG00000065791 ENSMUST00000083857 Gm25516 snRNA Interval_71181 chr17 20965135 20966231 + 0 NA exon (ENSMUSG00000007564.15, exon 15 of 15) protein_coding-exon (ENSMUSG00000007564.15, exon 15 of 15) 389 ENSMUSG00000007564.15 ENSMUSG00000007564 ENSMUST00000231928 Ppp2r1a protein_coding Interval_103175 chr3 36310414 36312062 + 0 NA Intergenic Intergenic -36578 ENSMUSG00000106140.1 ENSMUSG00000106140 ENSMUST00000198215 Gm42208 lincRNA Interval_160469 chr8 109760794 109761009 + 0 NA Intergenic Intergenic -28788 ENSMUSG00000069895.4 ENSMUSG00000069895 ENSMUST00000212726 Atxn1l protein_coding Interval_144490 chr7 25424422 25424697 + 0 NA intron (ENSMUSG00000053714.8, intron 4 of 6) antisense-intron (ENSMUSG00000053714.8, intron 4 of 6) -1767 ENSMUSG00000108503.1 ENSMUSG00000108503 ENSMUST00000206478 Gm20949 processed_pseudogene Interval_116928 chr4 118270880 118272673 + 0 NA intron (ENSMUSG00000033295.14, intron 3 of 9) protein_coding-intron (ENSMUSG00000033295.14, intron 3 of 32) 19498 ENSMUSG00000033295.14 ENSMUSG00000033295 ENSMUST00000222620 Ptprf protein_coding Interval_13133 chr10 12106824 12107337 + 0 NA Intergenic Intergenic -75640 ENSMUSG00000112775.1 ENSMUSG00000112775 ENSMUST00000220015 Gm48722 lincRNA Interval_147219 chr7 64741614 64742503 + 0 NA intron (ENSMUSG00000030519.14, intron 7 of 11) protein_coding-intron (ENSMUSG00000030519.14, intron 10 of 14) -2525 ENSMUSG00000030519.14 ENSMUSG00000030519 ENSMUST00000206630 Apba2 protein_coding Interval_44128 chr13 41078848 41080061 + 0 NA promoter-TSS (ENSMUSG00000021363.14) protein_coding-promoter-TSS (ENSMUSG00000021363.14) -11976 ENSMUSG00000114385.1 ENSMUSG00000114385 ENSMUST00000225870 Gm48344 processed_pseudogene Interval_100462 chr2 169139675 169140029 + 0 NA Intergenic Intergenic 33399 ENSMUSG00000086238.1 ENSMUSG00000086238 ENSMUST00000144607 Gm14258 lincRNA Interval_91699 chr2 48400987 48401189 + 0 NA intron (ENSMUSG00000086353.1, intron 1 of 5) lincRNA-intron (ENSMUSG00000086353.1, intron 1 of 5) 13051 ENSMUSG00000083866.1 ENSMUSG00000083866 ENSMUST00000120948 Gm13472 processed_pseudogene Interval_84418 chr19 10763422 10763926 + 0 NA intron (ENSMUSG00000067577.8, intron 2 of 3) processed_transcript-intron (ENSMUSG00000067577.8, intron 1 of 3) -18241 ENSMUSG00000067577.8 ENSMUSG00000067577 ENSMUST00000186052 A430093F15Rik processed_transcript Interval_27428 chr11 67603339 67603554 + 0 NA exon (ENSMUSG00000033066.16, exon 2 of 2) protein_coding-exon (ENSMUSG00000033066.16, exon 2 of 2) 6882 ENSMUSG00000033066.16 ENSMUSG00000033066 ENSMUST00000133367 Gas7 protein_coding Interval_94080 chr2 83700964 83701409 + 0 NA promoter-TSS (ENSMUSG00000085450.1) antisense-promoter-TSS (ENSMUSG00000085450.1) -70 ENSMUSG00000085450.1 ENSMUSG00000085450 ENSMUST00000122851 Gm13686 antisense Interval_174537 chrX 157446209 157447089 + 0 NA intron (ENSMUSG00000071708.11, intron 9 of 9) protein_coding-intron (ENSMUSG00000071708.11, intron 10 of 10) 14212 ENSMUSG00000071708.11 ENSMUSG00000071708 ENSMUST00000123770 Sms protein_coding Interval_87346 chr19 47854402 47855671 + 0 NA promoter-TSS (ENSMUSG00000025068.8) protein_coding-promoter-TSS (ENSMUSG00000025068.8) -2 ENSMUSG00000025068.8 ENSMUSG00000025068 ENSMUST00000143694 Gsto1 protein_coding Interval_166750 chr9 62414966 62415975 + 0 NA Intergenic Intergenic 33678 ENSMUSG00000041729.15 ENSMUSG00000041729 ENSMUST00000123379 Coro2b protein_coding Interval_100289 chr2 168178324 168179534 + 0 NA promoter-TSS (ENSMUSG00000092923.1) miRNA-promoter-TSS (ENSMUSG00000092923.1) -677 ENSMUSG00000092923.1 ENSMUSG00000092923 ENSMUST00000175182 Gm24561 miRNA Interval_128732 chr5 114978943 114980429 + 0 NA intron (ENSMUSG00000086054.2, intron 2 of 5) antisense-intron (ENSMUSG00000086054.2, intron 1 of 1) 4230 ENSMUSG00000106838.1 ENSMUSG00000106838 ENSMUST00000202592 1810017P11Rik TEC Interval_126571 chr5 90342680 90342925 + 0 NA intron (ENSMUSG00000055204.15, intron 1 of 26) protein_coding-intron (ENSMUSG00000055204.15, intron 1 of 33) 23383 ENSMUSG00000055204.15 ENSMUSG00000055204 ENSMUST00000202226 Ankrd17 protein_coding Interval_98130 chr2 148572305 148573065 + 0 NA Intergenic Intergenic -52026 ENSMUSG00000088870.1 ENSMUSG00000088870 ENSMUST00000158245 Gm25866 snoRNA Interval_163072 chr9 15020946 15021794 + 0 NA intron (ENSMUSG00000031934.14, intron 2 of 2) protein_coding-intron (ENSMUSG00000031934.14, intron 2 of 3) 22427 ENSMUSG00000031934.14 ENSMUSG00000031934 ENSMUST00000169288 Panx1 protein_coding Interval_7134 chr1 126931717 126932150 + 0 NA Intergenic Intergenic -55318 ENSMUSG00000101600.1 ENSMUSG00000101600 ENSMUST00000188266 4930599A14Rik lincRNA Interval_103334 chr3 39175404 39175684 + 0 NA Intergenic Intergenic 42302 ENSMUSG00000107333.1 ENSMUSG00000107333 ENSMUST00000202346 Gm43008 processed_pseudogene Interval_19227 chr10 95615766 95616756 + 0 NA Intergenic Intergenic 12469 ENSMUSG00000089618.1 ENSMUSG00000089618 ENSMUST00000158993 Gm23776 misc_RNA Interval_108833 chr3 132155015 132155274 + 0 NA intron (ENSMUSG00000028031.6, intron 1 of 3) protein_coding-intron (ENSMUSG00000028031.6, intron 1 of 3) 69852 ENSMUSG00000028031.6 ENSMUSG00000028031 ENSMUST00000029665 Dkk2 protein_coding Interval_129909 chr5 123028915 123029774 + 0 NA exon (ENSMUSG00000049686.14, exon 2 of 3) protein_coding-exon (ENSMUSG00000049686.14, exon 2 of 3) -6656 ENSMUSG00000105107.1 ENSMUSG00000105107 ENSMUST00000197455 Gm43412 TEC Interval_118654 chr4 133010666 133013619 + 0 NA promoter-TSS (ENSMUSG00000037692.14) protein_coding-promoter-TSS (ENSMUSG00000037692.14) 304 ENSMUSG00000037692.14 ENSMUSG00000037692 ENSMUST00000148518 Ahdc1 protein_coding Interval_144320 chr7 24462437 24463422 + 0 NA intron (ENSMUSG00000046223.10, intron 1 of 3) protein_coding-intron (ENSMUSG00000046223.10, intron 1 of 6) 429 ENSMUSG00000046223.10 ENSMUSG00000046223 ENSMUST00000206636 Plaur protein_coding Interval_135398 chr6 39057568 39058652 + 0 NA intron (ENSMUSG00000029925.13, intron 9 of 11) protein_coding-intron (ENSMUSG00000029925.13, intron 9 of 12) 9488 ENSMUSG00000100121.1 ENSMUSG00000100121 ENSMUST00000186189 1700025N23Rik antisense Interval_109092 chr3 135690645 135692102 + 0 NA exon (ENSMUSG00000028163.17, exon 1 of 25) protein_coding-exon (ENSMUSG00000028163.17, exon 1 of 25) -36807 ENSMUSG00000106149.1 ENSMUSG00000106149 ENSMUST00000196513 Gm43430 TEC Interval_91413 chr2 38637689 38638457 + 0 NA promoter-TSS (ENSMUSG00000095278.2) miRNA-promoter-TSS (ENSMUSG00000095278.2) -930 ENSMUSG00000095278.2 ENSMUSG00000095278 ENSMUST00000175060 Gm27634 miRNA Interval_162963 chr9 13797070 13797476 + 0 NA intron (ENSMUSG00000031918.16, intron 10 of 15) protein_coding-intron (ENSMUSG00000031918.16, intron 9 of 14) 21636 ENSMUSG00000031922.12 ENSMUSG00000031922 ENSMUST00000124524 Cep57 protein_coding Interval_11289 chr1 180774663 180775379 + 0 NA Intergenic Intergenic -6365 ENSMUSG00000103156.1 ENSMUSG00000103156 ENSMUST00000193209 Gm38293 lincRNA Interval_35993 chr12 33167071 33167333 + 0 NA intron (ENSMUSG00000020564.17, intron 2 of 12) protein_coding-intron (ENSMUSG00000020564.17, intron 1 of 2) -19606 ENSMUSG00000052125.16 ENSMUSG00000052125 ENSMUST00000172344 F730043M19Rik bidirectional_promoter_lncRNA Interval_27092 chr11 62831020 62831839 + 0 NA intron (ENSMUSG00000047821.16, intron 3 of 6) protein_coding-intron (ENSMUSG00000047821.16, intron 2 of 5) 10989 ENSMUSG00000047821.16 ENSMUSG00000047821 ENSMUST00000128623 Trim16 protein_coding Interval_40235 chr12 102675655 102676854 + 0 NA intron (ENSMUSG00000096751.3, intron 2 of 2) protein_coding-intron (ENSMUSG00000057963.9, intron 1 of 9) 8766 ENSMUSG00000089324.1 ENSMUSG00000089324 ENSMUST00000158699 Mir1936 miRNA Interval_133549 chr6 6489914 6490737 + 0 NA intron (ENSMUSG00000093380.1, intron 2 of 2) lincRNA-intron (ENSMUSG00000093380.1, intron 2 of 2) -6004 ENSMUSG00000093658.1 ENSMUSG00000093658 ENSMUST00000177082 Gm20617 lincRNA Interval_6955 chr1 121352547 121352826 + 0 NA Intergenic Intergenic 7214 ENSMUSG00000101791.1 ENSMUSG00000101791 ENSMUST00000190690 2210011K15Rik lincRNA Interval_96126 chr2 119926416 119927096 + 0 NA TTS (ENSMUSG00000033943.15) protein_coding-TTS (ENSMUSG00000033943.15) 29451 ENSMUSG00000033943.15 ENSMUSG00000033943 ENSMUST00000131396 Mga protein_coding Interval_125006 chr5 63763811 63764114 + 0 NA intron (ENSMUSG00000090061.9, intron 4 of 6) protein_coding-intron (ENSMUSG00000090061.9, intron 3 of 6) -36500 ENSMUSG00000090061.9 ENSMUSG00000090061 ENSMUST00000162757 Nwd2 protein_coding Interval_145597 chr7 35802304 35803378 + 0 NA exon (ENSMUSG00000044997.3, exon 1 of 1) antisense-exon (ENSMUSG00000044997.3, exon 1 of 1) 249 ENSMUSG00000044997.3 ENSMUSG00000044997 ENSMUST00000052454 E130304I02Rik antisense Interval_50878 chr14 20406208 20406531 + 0 NA intron (ENSMUSG00000039543.16, intron 20 of 28) protein_coding-intron (ENSMUSG00000039543.16, intron 19 of 27) 8010 ENSMUSG00000084942.1 ENSMUSG00000084942 ENSMUST00000125558 7330404K18Rik antisense Interval_165930 chr9 54746665 54746860 + 0 NA Intergenic Intergenic -17986 ENSMUSG00000032291.8 ENSMUSG00000032291 ENSMUST00000034830 Crabp1 protein_coding Interval_116109 chr4 107749728 107750444 + 0 NA intron (ENSMUSG00000085549.7, intron 3 of 3) lincRNA-intron (ENSMUSG00000085549.7, intron 3 of 3) 10379 ENSMUSG00000084874.4 ENSMUSG00000084874 ENSMUST00000154610 Gm12906 processed_pseudogene Interval_2401 chr1 39005778 39007142 + 0 NA Intergenic Intergenic 13782 ENSMUSG00000103046.1 ENSMUSG00000103046 ENSMUST00000194994 Gm37309 TEC Interval_154132 chr8 12947606 12948798 + 0 NA TTS (ENSMUSG00000105030.1) miRNA-TTS (ENSMUSG00000105030.1) 261 ENSMUSG00000105030.1 ENSMUSG00000105030 ENSMUST00000200573 Gm38671 miRNA Interval_102109 chr3 17759603 17759802 + 0 NA Intergenic Intergenic -30255 ENSMUSG00000100252.6 ENSMUSG00000100252 ENSMUST00000185804 Mir124-2hg lincRNA Interval_147255 chr7 65175601 65176256 + 0 NA Intergenic Intergenic -1737 ENSMUSG00000108445.1 ENSMUSG00000108445 ENSMUST00000205315 Gm17918 processed_pseudogene Interval_16012 chr10 60115330 60116090 + 0 NA intron (ENSMUSG00000058297.16, intron 2 of 10) protein_coding-intron (ENSMUSG00000058297.16, intron 1 of 10) 9242 ENSMUSG00000058297.16 ENSMUSG00000058297 ENSMUST00000165024 Spock2 protein_coding Interval_19921 chr10 111215404 111215647 + 0 NA intron (ENSMUSG00000020189.15, intron 2 of 22) protein_coding-intron (ENSMUSG00000020189.15, intron 2 of 22) -32543 ENSMUSG00000020189.15 ENSMUSG00000020189 ENSMUST00000238838 Osbpl8 protein_coding Interval_15404 chr10 45591852 45592360 + 0 NA intron (ENSMUSG00000038822.15, intron 3 of 6) protein_coding-intron (ENSMUSG00000038822.15, intron 4 of 23) 10887 ENSMUSG00000111466.1 ENSMUSG00000111466 ENSMUST00000214524 Gm47504 processed_pseudogene Interval_3844 chr1 63528716 63529211 + 0 NA intron (ENSMUSG00000025964.15, intron 4 of 9) protein_coding-intron (ENSMUSG00000025964.15, intron 5 of 25) 46627 ENSMUSG00000087823.1 ENSMUSG00000087823 ENSMUST00000157198 Gm22281 snRNA Interval_68318 chr16 73022334 73022936 + 0 NA intron (ENSMUSG00000022883.11, intron 24 of 28) protein_coding-intron (ENSMUSG00000022883.11, intron 24 of 28) 46286 ENSMUSG00000022883.11 ENSMUSG00000022883 ENSMUST00000232432 Robo1 protein_coding Interval_67252 chr16 44778520 44778714 + 0 NA intron (ENSMUSG00000022667.18, intron 1 of 7) protein_coding-intron (ENSMUSG00000022667.18, intron 1 of 6) 12818 ENSMUSG00000022667.18 ENSMUSG00000022667 ENSMUST00000134625 Cd200r1 protein_coding Interval_127191 chr5 100988741 100988945 + 0 NA Intergenic Intergenic -75136 ENSMUSG00000106255.1 ENSMUSG00000106255 ENSMUST00000199211 Gm36793 lincRNA Interval_126602 chr5 90661183 90662196 + 0 NA Intergenic Intergenic -51888 ENSMUSG00000029370.10 ENSMUSG00000029370 ENSMUST00000201436 Rassf6 protein_coding Interval_61571 chr15 82507036 82507961 + 0 NA intron (ENSMUSG00000115931.1, intron 1 of 3) unprocessed_pseudogene-intron (ENSMUSG00000115931.1, intron 1 of 3) 2871 ENSMUSG00000115931.1 ENSMUSG00000115931 ENSMUST00000230026 Gm27825 unprocessed_pseudogene Interval_134225 chr6 23231647 23231851 + 0 NA Intergenic Intergenic 16613 ENSMUSG00000029697.6 ENSMUSG00000029697 ENSMUST00000031709 Fezf1 protein_coding Interval_109335 chr3 139061458 139062083 + 0 NA intron (ENSMUSG00000028149.12, intron 1 of 12) protein_coding-intron (ENSMUSG00000028149.12, intron 1 of 13) 13378 ENSMUSG00000028149.12 ENSMUSG00000028149 ENSMUST00000195953 Rap1gds1 protein_coding Interval_119626 chr4 138825851 138826413 + 0 NA intron (ENSMUSG00000041193.15, intron 1 of 5) protein_coding-intron (ENSMUSG00000041193.15, intron 1 of 5) 1344 ENSMUSG00000087894.1 ENSMUSG00000087894 ENSMUST00000157269 Gm25280 snRNA Interval_55991 chr14 103718057 103719533 + 0 NA Intergenic Intergenic -19353 ENSMUSG00000089707.1 ENSMUSG00000089707 ENSMUST00000160117 Slain1os antisense Interval_151403 chr7 122107681 122108095 + 0 NA intron (ENSMUSG00000044702.13, intron 2 of 2) protein_coding-intron (ENSMUSG00000044702.13, intron 9 of 9) -6182 ENSMUSG00000030869.11 ENSMUSG00000030869 ENSMUST00000146022 Ndufab1 protein_coding Interval_117169 chr4 120197007 120197269 + 0 NA Intergenic Intergenic 35932 ENSMUSG00000028635.7 ENSMUSG00000028635 ENSMUST00000030384 Edn2 protein_coding Interval_94061 chr2 83323837 83324502 + 0 NA Intergenic Intergenic 29780 ENSMUSG00000081400.1 ENSMUSG00000081400 ENSMUST00000119790 Gm13680 processed_pseudogene Interval_11064 chr1 179106584 179108128 + 0 NA intron (ENSMUSG00000055067.15, intron 5 of 11) protein_coding-intron (ENSMUSG00000055067.15, intron 2 of 8) -189742 ENSMUSG00000089713.1 ENSMUSG00000089713 ENSMUST00000162545 Gm16564 antisense Interval_159426 chr8 94551460 94552405 + 0 NA intron (ENSMUSG00000034361.10, intron 4 of 15) protein_coding-intron (ENSMUSG00000034361.10, intron 4 of 15) -3582 ENSMUSG00000034361.10 ENSMUSG00000034361 ENSMUST00000156377 Cpne2 protein_coding Interval_46989 chr13 73963685 73964148 + 0 NA promoter-TSS (ENSMUSG00000069189.5) protein_coding-promoter-TSS (ENSMUSG00000069189.5) 54 ENSMUSG00000069189.5 ENSMUSG00000069189 ENSMUST00000222951 Zdhhc11 protein_coding Interval_52603 chr14 47820227 47821354 + 0 NA intron (ENSMUSG00000115310.1, intron 2 of 2) lincRNA-intron (ENSMUSG00000115310.1, intron 2 of 3) -15471 ENSMUSG00000115215.1 ENSMUSG00000115215 ENSMUST00000226360 Gm41148 lincRNA Interval_119669 chr4 139115520 139116314 + 0 NA intron (ENSMUSG00000050608.11, intron 1 of 3) protein_coding-intron (ENSMUSG00000050608.11, intron 1 of 3) 15077 ENSMUSG00000050608.11 ENSMUSG00000050608 ENSMUST00000154642 Micos10 protein_coding Interval_105848 chr3 89691730 89692099 + 0 NA Intergenic Intergenic -23108 ENSMUSG00000027951.16 ENSMUSG00000027951 ENSMUST00000131030 Adar protein_coding Interval_59010 chr15 41664737 41665278 + 0 NA intron (ENSMUSG00000022307.16, intron 3 of 15) protein_coding-intron (ENSMUSG00000022307.16, intron 3 of 15) 123904 ENSMUSG00000097232.1 ENSMUSG00000097232 ENSMUST00000180418 Gm26854 antisense Interval_74156 chr17 46836623 46837469 + 0 NA intron (ENSMUSG00000036568.7, intron 1 of 4) protein_coding-intron (ENSMUSG00000036568.7, intron 1 of 4) -4732 ENSMUSG00000036568.7 ENSMUSG00000036568 ENSMUST00000233455 Bicral protein_coding Interval_26570 chr11 58961620 58962234 + 0 NA exon (ENSMUSG00000080152.4, exon 1 of 1) unprocessed_pseudogene-exon (ENSMUSG00000080152.4, exon 1 of 1) 115 ENSMUSG00000080152.4 ENSMUSG00000080152 ENSMUST00000122447 H3f4 unprocessed_pseudogene Interval_54674 chr14 73177848 73178666 + 0 NA exon (ENSMUSG00000022106.14, exon 2 of 3) protein_coding-exon (ENSMUSG00000022106.14, exon 2 of 3) 9064 ENSMUSG00000090706.1 ENSMUSG00000090706 ENSMUST00000168470 Gm17233 antisense Interval_87721 chr19 55421678 55422356 + 0 NA intron (ENSMUSG00000024983.10, intron 5 of 7) protein_coding-intron (ENSMUSG00000024983.10, intron 5 of 7) 105690 ENSMUSG00000024983.10 ENSMUSG00000024983 ENSMUST00000224396 Vti1a protein_coding Interval_73017 chr17 34152832 34153549 + 0 NA exon (ENSMUSG00000079547.4, exon 1 of 6) protein_coding-exon (ENSMUSG00000079547.4, exon 1 of 6) -3655 ENSMUSG00000079547.4 ENSMUSG00000079547 ENSMUST00000174765 H2-DMb1 protein_coding Interval_122758 chr5 25178720 25179494 + 0 NA Intergenic Intergenic -2395 ENSMUSG00000028938.9 ENSMUSG00000028938 ENSMUST00000114965 Galntl5 protein_coding Interval_143853 chr7 16762921 16763150 + 0 NA Intergenic Intergenic -19363 ENSMUSG00000001918.17 ENSMUSG00000001918 ENSMUST00000141349 Slc1a5 protein_coding Interval_120726 chr4 150291423 150292173 + 0 NA intron (ENSMUSG00000039852.17, intron 1 of 22) protein_coding-intron (ENSMUSG00000039852.17, intron 1 of 22) 23638 ENSMUSG00000085787.3 ENSMUSG00000085787 ENSMUST00000136346 Gm13092 processed_pseudogene Interval_78977 chr18 23504813 23505242 + 0 NA intron (ENSMUSG00000024302.16, intron 2 of 4) protein_coding-intron (ENSMUSG00000024302.16, intron 2 of 11) 8192 ENSMUSG00000024302.16 ENSMUSG00000024302 ENSMUST00000222726 Dtna protein_coding Interval_85101 chr19 22840148 22840985 + 0 NA intron (ENSMUSG00000052387.16, intron 8 of 24) protein_coding-intron (ENSMUSG00000052387.16, intron 8 of 26) 89961 ENSMUSG00000065507.3 ENSMUSG00000065507 ENSMUST00000083573 Mir204 miRNA Interval_72329 chr17 29234925 29235200 + 0 NA intron (ENSMUSG00000024008.16, intron 1 of 13) protein_coding-intron (ENSMUSG00000024008.16, intron 1 of 20) 11766 ENSMUSG00000117610.1 ENSMUSG00000117610 ENSMUST00000235091 Gm50054 TEC Interval_68610 chr16 81223801 81224155 + 0 NA intron (ENSMUSG00000022762.18, intron 1 of 8) protein_coding-intron (ENSMUSG00000022762.18, intron 1 of 15) 38037 ENSMUSG00000084671.1 ENSMUSG00000084671 ENSMUST00000122722 Gm26023 misc_RNA Interval_88537 chr2 5926012 5926323 + 0 NA intron (ENSMUSG00000025815.13, intron 2 of 2) protein_coding-intron (ENSMUSG00000025815.13, intron 4 of 17) -14331 ENSMUSG00000025815.13 ENSMUSG00000025815 ENSMUST00000151649 Dhtkd1 protein_coding Interval_84934 chr19 19162675 19162936 + 0 NA Intergenic Intergenic -113094 ENSMUSG00000088907.1 ENSMUSG00000088907 ENSMUST00000158282 Gm25437 snoRNA Interval_178 JH792828.1 173184 173429 + 0 NA NA NA NA NA Interval_134772 chr6 31369873 31371602 + 0 NA intron (ENSMUSG00000086212.7, intron 2 of 2) lincRNA-intron (ENSMUSG00000086212.7, intron 2 of 2) -2158 ENSMUSG00000086855.1 ENSMUSG00000086855 ENSMUST00000134541 Gm13844 lincRNA Interval_74858 chr17 56909687 56910076 + 0 NA intron (ENSMUSG00000024212.9, intron 3 of 11) protein_coding-intron (ENSMUSG00000024212.9, intron 3 of 11) -4135 ENSMUSG00000024212.9 ENSMUSG00000024212 ENSMUST00000233063 Mllt1 protein_coding Interval_59302 chr15 50963362 50964800 + 0 NA Intergenic Intergenic 66442 ENSMUSG00000115339.1 ENSMUSG00000115339 ENSMUST00000226611 Gm48913 lincRNA Interval_27670 chr11 69397991 69398476 + 0 NA promoter-TSS (ENSMUSG00000045377.5) protein_coding-promoter-TSS (ENSMUSG00000045377.5) 1 ENSMUSG00000045377.5 ENSMUSG00000045377 ENSMUST00000050140 Tmem88 protein_coding Interval_154105 chr8 12716007 12717213 + 0 NA intron (ENSMUSG00000074469.6, intron 2 of 3) lincRNA-intron (ENSMUSG00000074469.6, intron 2 of 3) 2517 ENSMUSG00000074469.6 ENSMUSG00000074469 ENSMUST00000151188 Gm15348 lincRNA Interval_120446 chr4 148661917 148662766 + 0 NA intron (ENSMUSG00000070577.5, intron 5 of 10) protein_coding-intron (ENSMUSG00000070577.5, intron 5 of 10) 19024 ENSMUSG00000070577.5 ENSMUSG00000070577 ENSMUST00000105698 Gm572 protein_coding Interval_66845 chr16 38088310 38090008 + 0 NA exon (ENSMUSG00000022812.14, exon 1 of 11) protein_coding-exon (ENSMUSG00000022812.14, exon 1 of 11) -68849 ENSMUSG00000095395.2 ENSMUSG00000095395 ENSMUST00000179548 Gm25617 snoRNA Interval_32039 chr11 104624845 104626501 + 0 NA intron (ENSMUSG00000020689.4, intron 2 of 14) protein_coding-intron (ENSMUSG00000020689.4, intron 2 of 14) -11716 ENSMUSG00000020689.4 ENSMUSG00000020689 ENSMUST00000127140 Itgb3 protein_coding Interval_139644 chr6 104983198 104984823 + 0 NA Intergenic Intergenic 81143 ENSMUSG00000107836.1 ENSMUSG00000107836 ENSMUST00000204430 Gm5315 processed_pseudogene Interval_141329 chr6 127272447 127272859 + 0 NA Intergenic Intergenic 9856 ENSMUSG00000081113.1 ENSMUSG00000081113 ENSMUST00000121087 Gm7308 processed_pseudogene Interval_84623 chr19 14499224 14500369 + 0 NA intron (ENSMUSG00000024642.17, intron 7 of 19) protein_coding-intron (ENSMUSG00000024642.17, intron 8 of 19) 95743 ENSMUSG00000024642.17 ENSMUSG00000024642 ENSMUST00000235975 Tle4 protein_coding Interval_174736 chrX 164406330 164406962 + 0 NA Intergenic Intergenic -13141 ENSMUSG00000031381.16 ENSMUSG00000031381 ENSMUST00000155849 Piga protein_coding Interval_49714 chr13 114190270 114191221 + 0 NA Intergenic Intergenic -36366 ENSMUSG00000104314.1 ENSMUSG00000104314 ENSMUST00000195644 Gm37907 TEC Interval_87999 chr19 57686648 57687088 + 0 NA intron (ENSMUSG00000054843.9, intron 13 of 28) protein_coding-intron (ENSMUSG00000054843.9, intron 13 of 28) 75834 ENSMUSG00000054843.9 ENSMUSG00000054843 ENSMUST00000077282 Atrnl1 protein_coding Interval_117073 chr4 119368783 119369037 + 0 NA intron (ENSMUSG00000028637.16, intron 1 of 5) protein_coding-intron (ENSMUSG00000028637.16, intron 2 of 6) 4843 ENSMUSG00000028637.16 ENSMUSG00000028637 ENSMUST00000238559 Ccdc30 protein_coding Interval_122964 chr5 27994904 27996082 + 0 NA Intergenic Intergenic 5813 ENSMUSG00000104777.1 ENSMUSG00000104777 ENSMUST00000196284 Gm4865 processed_pseudogene Interval_82515 chr18 74814548 74815429 + 0 NA Intergenic Intergenic 21605 ENSMUSG00000036880.10 ENSMUSG00000036880 ENSMUST00000237306 Acaa2 protein_coding Interval_125714 chr5 73498308 73498777 + 0 NA intron (ENSMUSG00000051674.15, intron 1 of 4) protein_coding-intron (ENSMUSG00000051674.15, intron 1 of 10) 5886 ENSMUSG00000051674.15 ENSMUSG00000051674 ENSMUST00000136268 Dcun1d4 protein_coding Interval_134153 chr6 22025443 22026437 + 0 NA promoter-TSS (ENSMUSG00000062980.15) protein_coding-promoter-TSS (ENSMUSG00000062980.15) -3 ENSMUSG00000062980.15 ENSMUSG00000062980 ENSMUST00000154734 Cped1 protein_coding Interval_99229 chr2 158258082 158259331 + 0 NA intron (ENSMUSG00000052922.9, intron 1 of 14) protein_coding-intron (ENSMUSG00000052922.9, intron 1 of 14) 612 ENSMUSG00000052922.9 ENSMUSG00000052922 ENSMUST00000065039 Bpi protein_coding Interval_20815 chr10 121247451 121247932 + 0 NA Intergenic Intergenic 4689 ENSMUSG00000112871.1 ENSMUSG00000112871 ENSMUST00000219186 Gm35404 lincRNA Interval_58944 chr15 40281258 40281481 + 0 NA Intergenic Intergenic -61891 ENSMUSG00000115820.1 ENSMUSG00000115820 ENSMUST00000226247 Gm41311 lincRNA Interval_88841 chr2 11570684 11571685 + 0 NA Intergenic Intergenic -17262 ENSMUSG00000026773.19 ENSMUSG00000026773 ENSMUST00000145970 Pfkfb3 protein_coding Interval_162214 chr8 126028804 126029700 + 0 NA TTS (ENSMUSG00000110698.1) antisense-TTS (ENSMUSG00000110698.1) 17556 ENSMUSG00000110698.1 ENSMUSG00000110698 ENSMUST00000212178 Gm45875 antisense Interval_140624 chr6 120171608 120172557 + 0 NA intron (ENSMUSG00000041377.12, intron 1 of 3) protein_coding-intron (ENSMUSG00000041377.12, intron 1 of 3) -28332 ENSMUSG00000095086.1 ENSMUSG00000095086 ENSMUST00000180263 Gm25327 snRNA Interval_115506 chr4 99572708 99573468 + 0 NA TTS (ENSMUSG00000087332.1) lincRNA-TTS (ENSMUSG00000087332.1) 3588 ENSMUSG00000087332.1 ENSMUSG00000087332 ENSMUST00000132108 Gm12690 lincRNA Interval_144 GL456387.1 14771 15649 + 0 NA NA NA NA NA Interval_57545 chr15 12237653 12238487 + 0 NA intron (ENSMUSG00000039458.15, intron 6 of 15) protein_coding-intron (ENSMUSG00000039458.15, intron 6 of 15) 32966 ENSMUSG00000039458.15 ENSMUSG00000039458 ENSMUST00000173071 Mtmr12 protein_coding Interval_81123 chr18 54347789 54347992 + 0 NA Intergenic Intergenic -74405 ENSMUSG00000096982.2 ENSMUSG00000096982 ENSMUST00000181269 Redrum lincRNA Interval_39569 chr12 90873422 90873645 + 0 NA intron (ENSMUSG00000097071.2, intron 2 of 4) lincRNA-intron (ENSMUSG00000097071.2, intron 2 of 4) 58336 ENSMUSG00000089439.1 ENSMUSG00000089439 ENSMUST00000158814 Gm23195 snoRNA Interval_63484 chr15 101369457 101370443 + 0 NA TTS (ENSMUSG00000088459.1) miRNA-TTS (ENSMUSG00000088459.1) 598 ENSMUSG00000088459.1 ENSMUSG00000088459 ENSMUST00000157834 Mir1941 miRNA Interval_56599 chr14 120722805 120723204 + 0 NA Intergenic Intergenic 9926 ENSMUSG00000115630.1 ENSMUSG00000115630 ENSMUST00000226406 Rpl19-ps5 processed_pseudogene Interval_158430 chr8 83683706 83684807 + 0 NA intron (ENSMUSG00000057672.16, intron 5 of 21) protein_coding-intron (ENSMUSG00000057672.16, intron 5 of 21) -6421 ENSMUSG00000057672.16 ENSMUSG00000057672 ENSMUST00000135356 Pkn1 protein_coding Interval_161392 chr8 120190362 120191379 + 0 NA intron (ENSMUSG00000092329.1, intron 1 of 15) protein_coding-intron (ENSMUSG00000092329.1, intron 1 of 15) -13507 ENSMUSG00000042269.15 ENSMUSG00000042269 ENSMUST00000142478 Fam92b protein_coding Interval_160785 chr8 112236618 112236908 + 0 NA exon (ENSMUSG00000110435.1, exon 1 of 1) processed_pseudogene-exon (ENSMUSG00000110435.1, exon 1 of 1) 203 ENSMUSG00000110435.1 ENSMUSG00000110435 ENSMUST00000212314 Gm3635 processed_pseudogene Interval_146541 chr7 46729958 46731598 + 0 NA intron (ENSMUSG00000040017.8, intron 2 of 3) protein_coding-intron (ENSMUSG00000040017.8, intron 2 of 3) 1825 ENSMUSG00000040017.8 ENSMUSG00000040017 ENSMUST00000006952 Saa4 protein_coding Interval_68721 chr16 84987955 84988718 + 0 NA intron (ENSMUSG00000022892.11, intron 13 of 17) protein_coding-intron (ENSMUSG00000022892.11, intron 11 of 15) 16122 ENSMUSG00000115518.1 ENSMUSG00000115518 ENSMUST00000227835 Gm10791 antisense Interval_164409 chr9 36798662 36799158 + 0 NA Intergenic Intergenic -1842 ENSMUSG00000062762.17 ENSMUSG00000062762 ENSMUST00000217339 Ei24 protein_coding Interval_68141 chr16 65634997 65635378 + 0 NA Intergenic Intergenic -21768 ENSMUSG00000116578.1 ENSMUSG00000116578 ENSMUST00000232570 Gm49633 processed_pseudogene Interval_37215 chr12 60543397 60544287 + 0 NA Intergenic Intergenic 4396 ENSMUSG00000113678.1 ENSMUSG00000113678 ENSMUST00000222270 Gm6068 processed_pseudogene Interval_155836 chr8 39972903 39973615 + 0 NA Intergenic Intergenic -43455 ENSMUSG00000109815.1 ENSMUSG00000109815 ENSMUST00000209880 Gm7082 processed_pseudogene Interval_18832 chr10 91161719 91161911 + 0 NA exon (ENSMUSG00000019961.17, exon 4 of 4) protein_coding-exon (ENSMUSG00000019961.17, exon 4 of 4) 8647 ENSMUSG00000019961.17 ENSMUSG00000019961 ENSMUST00000213270 Tmpo protein_coding Interval_72041 chr17 27684747 27686190 + 0 NA intron (ENSMUSG00000040276.15, intron 1 of 9) protein_coding-intron (ENSMUSG00000040276.15, intron 1 of 9) 29880 ENSMUSG00000040276.15 ENSMUSG00000040276 ENSMUST00000231854 Pacsin1 protein_coding Interval_38377 chr12 78089611 78089852 + 0 NA Intergenic Intergenic -75815 ENSMUSG00000088039.1 ENSMUSG00000088039 ENSMUST00000157414 Gm24994 snoRNA Interval_60771 chr15 76656436 76657370 + 0 NA promoter-TSS (ENSMUSG00000053929.17) protein_coding-promoter-TSS (ENSMUSG00000053929.17) 2853 ENSMUSG00000053929.17 ENSMUSG00000053929 ENSMUST00000177359 Cyhr1 protein_coding Interval_167950 chr9 74876259 74876610 + 0 NA intron (ENSMUSG00000043013.10, intron 1 of 1) protein_coding-intron (ENSMUSG00000043013.10, intron 1 of 1) 9950 ENSMUSG00000043013.10 ENSMUSG00000043013 ENSMUST00000160499 Onecut1 protein_coding Interval_55225 chr14 79480691 79482166 + 0 NA promoter-TSS (ENSMUSG00000022023.6) protein_coding-promoter-TSS (ENSMUSG00000022023.6) -9191 ENSMUSG00000022023.6 ENSMUSG00000022023 ENSMUST00000228105 Wbp4 protein_coding Interval_28457 chr11 76034784 76035519 + 0 NA Intergenic Intergenic -7369 ENSMUSG00000020846.6 ENSMUSG00000020846 ENSMUST00000021207 Rflnb protein_coding Interval_129401 chr5 119746945 119747631 + 0 NA Intergenic Intergenic -56070 ENSMUSG00000086847.1 ENSMUSG00000086847 ENSMUST00000135385 Tbx3os2 lincRNA Interval_150881 chr7 116156386 116157608 + 0 NA exon (ENSMUSG00000045659.18, exon 10 of 10) protein_coding-exon (ENSMUSG00000045659.18, exon 10 of 10) -27472 ENSMUSG00000045659.18 ENSMUSG00000045659 ENSMUST00000205446 Plekha7 protein_coding Interval_153063 chr7 141141013 141141327 + 0 NA intron (ENSMUSG00000025495.15, intron 2 of 5) protein_coding-intron (ENSMUSG00000025495.15, intron 2 of 11) 8720 ENSMUSG00000025495.15 ENSMUSG00000025495 ENSMUST00000209928 Ptdss2 protein_coding Interval_142507 chr6 142952756 142953619 + 0 NA intron (ENSMUSG00000030283.7, intron 1 of 4) protein_coding-intron (ENSMUSG00000030283.7, intron 1 of 4) 10954 ENSMUSG00000030283.7 ENSMUSG00000030283 ENSMUST00000147058 St8sia1 protein_coding Interval_48745 chr13 102691289 102693446 + 0 NA Intergenic Intergenic -1244 ENSMUSG00000021624.9 ENSMUSG00000021624 ENSMUST00000172138 Cd180 protein_coding Interval_96601 chr2 126302165 126303676 + 0 NA Intergenic Intergenic -33557 ENSMUSG00000089480.1 ENSMUSG00000089480 ENSMUST00000158855 Gm24739 misc_RNA Interval_171188 chr9 115057788 115058830 + 0 NA intron (ENSMUSG00000040875.12, intron 1 of 2) protein_coding-intron (ENSMUSG00000040875.12, intron 1 of 11) 59693 ENSMUSG00000040875.12 ENSMUSG00000040875 ENSMUST00000182413 Osbpl10 protein_coding Interval_293 KZ289089.1 183056 183664 + 0 NA NA NA NA NA Interval_77234 chr17 87508728 87509142 + 0 NA Intergenic Intergenic 18187 ENSMUSG00000100847.1 ENSMUSG00000100847 ENSMUST00000188990 Gm28676 lincRNA Interval_31306 chr11 99529235 99530042 + 0 NA Intergenic Intergenic -8300 ENSMUSG00000064165.8 ENSMUSG00000064165 ENSMUST00000076948 Krt39 protein_coding Interval_53026 chr14 53634707 53634979 + 0 NA promoter-TSS (ENSMUSG00000076846.3) TR_V_gene-promoter-TSS (ENSMUSG00000076846.3) 14 ENSMUSG00000076846.3 ENSMUSG00000076846 ENSMUST00000103658 Trav13-2 TR_V_gene Interval_7101 chr1 125789170 125789363 + 0 NA intron (ENSMUSG00000026343.6, intron 1 of 1) protein_coding-intron (ENSMUSG00000026343.6, intron 1 of 1) -50737 ENSMUSG00000026343.6 ENSMUSG00000026343 ENSMUST00000159359 Gpr39 protein_coding Interval_142139 chr6 137560296 137561311 + 0 NA intron (ENSMUSG00000015766.14, intron 1 of 20) protein_coding-intron (ENSMUSG00000015766.14, intron 2 of 21) 9956 ENSMUSG00000015766.14 ENSMUSG00000015766 ENSMUST00000205037 Eps8 protein_coding Interval_37861 chr12 72658982 72659531 + 0 NA intron (ENSMUSG00000021094.10, intron 2 of 6) protein_coding-intron (ENSMUSG00000021094.10, intron 2 of 6) 5498 ENSMUSG00000021094.10 ENSMUSG00000021094 ENSMUST00000221674 Dhrs7 protein_coding Interval_59500 chr15 54653064 54653366 + 0 NA Intergenic Intergenic 82023 ENSMUSG00000024479.3 ENSMUSG00000024479 ENSMUST00000025356 Mal2 protein_coding Interval_8530 chr1 140722302 140723333 + 0 NA Intergenic Intergenic -66413 ENSMUSG00000102368.1 ENSMUSG00000102368 ENSMUST00000193820 4930590L20Rik antisense Interval_168644 chr9 84989371 84989577 + 0 NA Intergenic Intergenic -12959 ENSMUSG00000099779.1 ENSMUSG00000099779 ENSMUST00000189949 Gm8228 processed_pseudogene Interval_20441 chr10 117641961 117642199 + 0 NA intron (ENSMUSG00000020183.11, intron 2 of 3) protein_coding-intron (ENSMUSG00000020183.11, intron 2 of 8) 20308 ENSMUSG00000096357.1 ENSMUSG00000096357 ENSMUST00000178844 Gm25709 snRNA Interval_116046 chr4 107217494 107217933 + 0 NA intron (ENSMUSG00000070877.4, intron 4 of 4) protein_coding-intron (ENSMUSG00000070877.4, intron 4 of 4) 8533 ENSMUSG00000070877.4 ENSMUSG00000070877 ENSMUST00000094916 Ldlrad1 protein_coding Interval_11683 chr1 184653350 184653601 + 0 NA Intergenic Intergenic -24002 ENSMUSG00000103308.5 ENSMUSG00000103308 ENSMUST00000192129 Gm37800 lincRNA Interval_114917 chr4 86924968 86925304 + 0 NA intron (ENSMUSG00000038007.14, intron 5 of 5) protein_coding-intron (ENSMUSG00000038007.14, intron 5 of 5) -5555 ENSMUSG00000038007.14 ENSMUSG00000038007 ENSMUST00000135874 Acer2 protein_coding Interval_26923 chr11 61597928 61599036 + 0 NA Intergenic Intergenic -18795 ENSMUSG00000001036.17 ENSMUSG00000001036 ENSMUST00000137525 Epn2 protein_coding Interval_19732 chr10 108359918 108360233 + 0 NA intron (ENSMUSG00000035873.8, intron 1 of 4) protein_coding-intron (ENSMUSG00000035873.8, intron 2 of 6) -3590 ENSMUSG00000065653.1 ENSMUSG00000065653 ENSMUST00000083719 Gm23105 snoRNA Interval_18308 chr10 84756679 84757249 + 0 NA intron (ENSMUSG00000020037.15, intron 1 of 17) protein_coding-intron (ENSMUSG00000020037.15, intron 1 of 17) -5274 ENSMUSG00000020037.15 ENSMUSG00000020037 ENSMUST00000095388 Rfx4 protein_coding Interval_145461 chr7 34912064 34912977 + 0 NA intron (ENSMUSG00000063931.14, intron 1 of 14) protein_coding-intron (ENSMUSG00000063931.14, intron 1 of 14) 31465 ENSMUSG00000077469.1 ENSMUSG00000077469 ENSMUST00000104281 Gm25922 snoRNA Interval_70896 chr17 15720708 15720951 + 0 NA intron (ENSMUSG00000023852.14, intron 2 of 22) protein_coding-intron (ENSMUSG00000023852.14, intron 2 of 35) -17706 ENSMUSG00000023852.14 ENSMUSG00000023852 ENSMUST00000173040 Chd1 protein_coding Interval_92125 chr2 53509191 53509691 + 0 NA Intergenic Intergenic -42485 ENSMUSG00000080716.1 ENSMUSG00000080716 ENSMUST00000119017 Gm13503 processed_pseudogene Interval_109787 chr3 147032805 147033064 + 0 NA Intergenic Intergenic -63250 ENSMUSG00000103334.1 ENSMUSG00000103334 ENSMUST00000193142 Gm29771 lincRNA Interval_6864 chr1 120202157 120202770 + 0 NA intron (ENSMUSG00000026389.16, intron 4 of 4) protein_coding-intron (ENSMUSG00000026389.16, intron 4 of 4) 51864 ENSMUSG00000026388.15 ENSMUSG00000026388 ENSMUST00000128578 3110009E18Rik protein_coding Interval_84771 chr19 16464339 16465413 + 0 NA intron (ENSMUSG00000024697.4, intron 1 of 6) protein_coding-intron (ENSMUSG00000024697.4, intron 1 of 6) 25576 ENSMUSG00000024697.4 ENSMUSG00000024697 ENSMUST00000237350 Gna14 protein_coding Interval_62751 chr15 96634613 96636540 + 0 NA intron (ENSMUSG00000023169.15, intron 1 of 15) protein_coding-intron (ENSMUSG00000023169.15, intron 1 of 15) 6637 ENSMUSG00000023169.15 ENSMUSG00000023169 ENSMUST00000229253 Slc38a1 protein_coding Interval_137427 chr6 72196915 72197537 + 0 NA Intergenic Intergenic 34377 ENSMUSG00000108371.1 ENSMUSG00000108371 ENSMUST00000205674 Gm38832 lincRNA Interval_22383 chr11 9318735 9318980 + 0 NA intron (ENSMUSG00000004668.14, intron 23 of 61) protein_coding-intron (ENSMUSG00000004668.14, intron 23 of 61) 125406 ENSMUSG00000004668.14 ENSMUSG00000004668 ENSMUST00000151522 Abca13 protein_coding Interval_96200 chr2 120504186 120504448 + 0 NA TTS (ENSMUSG00000079110.12) protein_coding-TTS (ENSMUSG00000079110.12) 35543 ENSMUSG00000027288.16 ENSMUSG00000027288 ENSMUST00000147353 Zfp106 protein_coding Interval_33807 chr11 118659054 118659774 + 0 NA intron (ENSMUSG00000025576.17, intron 3 of 14) protein_coding-intron (ENSMUSG00000025576.17, intron 3 of 14) -131958 ENSMUSG00000085059.1 ENSMUSG00000085059 ENSMUST00000146016 Gm11750 lincRNA Interval_46616 chr13 67613668 67614342 + 0 NA exon (ENSMUSG00000021510.11, exon 4 of 4) protein_coding-exon (ENSMUSG00000021510.11, exon 4 of 4) -4360 ENSMUSG00000058093.13 ENSMUSG00000058093 ENSMUST00000138725 Zfp729b protein_coding Interval_55529 chr14 90872767 90872993 + 0 NA Intergenic Intergenic 153326 ENSMUSG00000115565.1 ENSMUSG00000115565 ENSMUST00000226394 Gm18082 processed_pseudogene Interval_151615 chr7 125357146 125357346 + 0 NA Intergenic Intergenic -7458 ENSMUSG00000045928.2 ENSMUSG00000045928 ENSMUST00000206609 4933440M02Rik lincRNA Interval_134154 chr6 22039566 22039787 + 0 NA intron (ENSMUSG00000062980.15, intron 1 of 3) protein_coding-intron (ENSMUSG00000062980.15, intron 2 of 9) 13733 ENSMUSG00000062980.15 ENSMUSG00000062980 ENSMUST00000154734 Cped1 protein_coding Interval_2775 chr1 44645026 44645192 + 0 NA TTS (ENSMUSG00000089877.1) processed_pseudogene-TTS (ENSMUSG00000089877.1) 830 ENSMUSG00000089877.1 ENSMUSG00000089877 ENSMUST00000160955 Gm16102 processed_pseudogene Interval_154238 chr8 13667942 13668640 + 0 NA intron (ENSMUSG00000031453.16, intron 1 of 6) protein_coding-intron (ENSMUSG00000031453.16, intron 1 of 23) 9160 ENSMUSG00000031453.16 ENSMUSG00000031453 ENSMUST00000132439 Rasa3 protein_coding Interval_64565 chr16 13357681 13358567 + 0 NA promoter-TSS (ENSMUSG00000009569.14) protein_coding-promoter-TSS (ENSMUSG00000009569.14) -297 ENSMUSG00000009569.14 ENSMUSG00000009569 ENSMUST00000149359 Mrtfb protein_coding Interval_12039 chr1 189012819 189013811 + 0 NA Intergenic Intergenic -5474 ENSMUSG00000026608.13 ENSMUSG00000026608 ENSMUST00000193273 Kctd3 protein_coding Interval_60331 chr15 72956156 72957058 + 0 NA intron (ENSMUSG00000047921.17, intron 9 of 16) protein_coding-intron (ENSMUSG00000047921.17, intron 9 of 21) 43250 ENSMUSG00000096173.2 ENSMUSG00000096173 ENSMUST00000166418 Gm3150 processed_pseudogene Interval_133495 chr6 5809671 5810723 + 0 NA intron (ENSMUSG00000029757.16, intron 6 of 16) protein_coding-intron (ENSMUSG00000029757.16, intron 5 of 15) 52778 ENSMUSG00000029757.16 ENSMUSG00000029757 ENSMUST00000203520 Dync1i1 protein_coding Interval_160861 chr8 114081125 114081892 + 0 NA Intergenic Intergenic -52133 ENSMUSG00000031767.13 ENSMUSG00000031767 ENSMUST00000134593 Nudt7 protein_coding Interval_46817 chr13 71458309 71459248 + 0 NA Intergenic Intergenic -28829 ENSMUSG00000113358.1 ENSMUSG00000113358 ENSMUST00000221719 1700112M02Rik lincRNA Interval_116656 chr4 116410655 116411624 + 0 NA intron (ENSMUSG00000003810.13, intron 2 of 5) protein_coding-intron (ENSMUSG00000003810.13, intron 3 of 28) -37649 ENSMUSG00000082592.1 ENSMUSG00000082592 ENSMUST00000121683 Gm12950 processed_pseudogene Interval_26561 chr11 58903527 58905389 + 0 NA promoter-TSS (ENSMUSG00000037001.10) protein_coding-promoter-TSS (ENSMUSG00000037001.10) 56 ENSMUSG00000086063.1 ENSMUSG00000086063 ENSMUST00000148244 Gm12257 antisense Interval_16082 chr10 60612753 60613497 + 0 NA intron (ENSMUSG00000012819.15, intron 4 of 7) protein_coding-intron (ENSMUSG00000012819.15, intron 2 of 66) 139658 ENSMUSG00000020100.15 ENSMUSG00000020100 ENSMUST00000144989 Slc29a3 protein_coding Interval_102022 chr3 15159068 15160864 + 0 NA intron (ENSMUSG00000103912.1, intron 3 of 4) lincRNA-intron (ENSMUSG00000103912.1, intron 3 of 4) 11476 ENSMUSG00000103912.1 ENSMUSG00000103912 ENSMUST00000194008 Gm33819 lincRNA Interval_163348 chr9 20990921 20991829 + 0 NA Intergenic Intergenic -11540 ENSMUSG00000003299.10 ENSMUSG00000003299 ENSMUST00000216466 Mrpl4 protein_coding Interval_2361 chr1 38475741 38476248 + 0 NA intron (ENSMUSG00000037138.18, intron 5 of 22) protein_coding-intron (ENSMUSG00000037138.18, intron 5 of 7) -11525 ENSMUSG00000102984.1 ENSMUSG00000102984 ENSMUST00000195175 Gm34727 processed_pseudogene Interval_45072 chr13 51862103 51862519 + 0 NA Intergenic Intergenic 15567 ENSMUSG00000021453.2 ENSMUSG00000021453 ENSMUST00000132480 Gadd45g protein_coding Interval_8918 chr1 152123821 152124468 + 0 NA Intergenic Intergenic -4441 ENSMUSG00000102090.1 ENSMUSG00000102090 ENSMUST00000165944 Gm8964 processed_pseudogene Interval_122137 chr5 17990736 17992169 + 0 NA exon (ENSMUSG00000028777.8, exon 3 of 8) protein_coding-exon (ENSMUSG00000028777.8, exon 3 of 8) 28903 ENSMUSG00000028777.8 ENSMUSG00000028777 ENSMUST00000030561 Gnat3 protein_coding Interval_131740 chr5 139581057 139581830 + 0 NA Intergenic Intergenic 37545 ENSMUSG00000029546.12 ENSMUSG00000029546 ENSMUST00000174792 Uncx protein_coding Interval_60356 chr15 73146723 73147670 + 0 NA intron (ENSMUSG00000036698.11, intron 1 of 18) protein_coding-intron (ENSMUSG00000036698.11, intron 1 of 18) 30651 ENSMUSG00000036698.11 ENSMUSG00000036698 ENSMUST00000230464 Ago2 protein_coding Interval_10305 chr1 168364438 168365163 + 0 NA intron (ENSMUSG00000052534.15, intron 2 of 7) protein_coding-intron (ENSMUSG00000052534.15, intron 2 of 6) -13992 ENSMUSG00000102594.1 ENSMUSG00000102594 ENSMUST00000193594 Gm38381 TEC Interval_90418 chr2 30342743 30344159 + 0 NA exon (ENSMUSG00000052533.14, exon 2 of 2) protein_coding-exon (ENSMUSG00000052533.14, exon 2 of 2) 15838 ENSMUSG00000026860.16 ENSMUSG00000026860 ENSMUST00000139963 Sh3glb2 protein_coding Interval_171708 chr9 120369580 120369784 + 0 NA intron (ENSMUSG00000041794.13, intron 2 of 5) protein_coding-intron (ENSMUSG00000041794.13, intron 2 of 16) -15229 ENSMUSG00000082356.1 ENSMUSG00000082356 ENSMUST00000118890 Gm15565 processed_pseudogene Interval_167797 chr9 72756886 72757089 + 0 NA Intergenic Intergenic 19238 ENSMUSG00000098294.1 ENSMUSG00000098294 ENSMUST00000184673 Gm27204 lincRNA Interval_9491 chr1 157726223 157726406 + 0 NA Intergenic Intergenic -104178 ENSMUSG00000103962.1 ENSMUSG00000103962 ENSMUST00000193203 Gm38213 processed_pseudogene Interval_76834 chr17 84407438 84407955 + 0 NA intron (ENSMUSG00000024251.10, intron 7 of 14) protein_coding-intron (ENSMUSG00000024251.10, intron 22 of 37) 16267 ENSMUSG00000096415.1 ENSMUSG00000096415 ENSMUST00000179017 Gm24722 snRNA Interval_40282 chr12 103123773 103124705 + 0 NA intron (ENSMUSG00000021198.16, intron 31 of 48) protein_coding-intron (ENSMUSG00000021198.16, intron 28 of 46) -3950 ENSMUSG00000098628.1 ENSMUSG00000098628 ENSMUST00000183635 Gm27976 misc_RNA Interval_152266 chr7 131129670 131130671 + 0 NA intron (ENSMUSG00000030849.18, intron 2 of 6) protein_coding-intron (ENSMUSG00000030849.18, intron 2 of 6) 16144 ENSMUSG00000013668.9 ENSMUSG00000013668 ENSMUST00000070980 4933402N03Rik protein_coding Interval_54188 chr14 66059154 66059573 + 0 NA intron (ENSMUSG00000022039.6, intron 7 of 12) protein_coding-intron (ENSMUSG00000022039.6, intron 7 of 20) 14283 ENSMUSG00000068165.3 ENSMUSG00000068165 ENSMUST00000089275 Gm10233 processed_pseudogene Interval_157425 chr8 70271618 70274775 + 0 NA promoter-TSS (ENSMUSG00000036054.15) protein_coding-promoter-TSS (ENSMUSG00000036054.15) -9838 ENSMUSG00000003573.15 ENSMUSG00000003573 ENSMUST00000135368 Homer3 protein_coding Interval_143953 chr7 18457959 18458663 + 0 NA Intergenic Intergenic -1623 ENSMUSG00000108906.1 ENSMUSG00000108906 ENSMUST00000208964 Gm8314 processed_pseudogene Interval_144169 chr7 19778103 19778875 + 0 NA TTS (ENSMUSG00000040525.13) protein_coding-TTS (ENSMUSG00000040525.13) 6951 ENSMUSG00000040525.13 ENSMUSG00000040525 ENSMUST00000131602 Cblc protein_coding Interval_170548 chr9 108630840 108631169 + 0 NA promoter-TSS (ENSMUSG00000064145.12) protein_coding-promoter-TSS (ENSMUSG00000064145.12) -860 ENSMUSG00000064145.12 ENSMUSG00000064145 ENSMUST00000195623 Arih2 protein_coding Interval_170314 chr9 106872916 106873131 + 0 NA intron (ENSMUSG00000032575.16, intron 1 of 2) protein_coding-intron (ENSMUSG00000040325.16, intron 21 of 22) 2349 ENSMUSG00000103835.1 ENSMUSG00000103835 ENSMUST00000193626 Gm37612 sense_intronic Interval_102267 chr3 20141649 20142290 + 0 NA intron (ENSMUSG00000019528.18, intron 4 of 7) protein_coding-intron (ENSMUSG00000019528.18, intron 4 of 6) 13100 ENSMUSG00000019528.18 ENSMUSG00000019528 ENSMUST00000135475 Gyg protein_coding Interval_118303 chr4 130157065 130157602 + 0 NA Intergenic Intergenic 17459 ENSMUSG00000028776.14 ENSMUSG00000028776 ENSMUST00000133660 Tinagl1 protein_coding Interval_123517 chr5 33119708 33120484 + 0 NA intron (ENSMUSG00000011034.6, intron 2 of 14) protein_coding-intron (ENSMUSG00000011034.6, intron 2 of 14) -6706 ENSMUSG00000081022.1 ENSMUSG00000081022 ENSMUST00000118706 Gm15936 processed_pseudogene Interval_52413 chr14 45771981 45773125 + 0 NA intron (ENSMUSG00000085866.1, intron 1 of 3) lincRNA-intron (ENSMUSG00000085866.1, intron 1 of 3) 17864 ENSMUSG00000085866.1 ENSMUSG00000085866 ENSMUST00000131006 Gm15218 lincRNA Interval_94371 chr2 90562114 90562557 + 0 NA intron (ENSMUSG00000025314.16, intron 1 of 23) protein_coding-intron (ENSMUSG00000025314.16, intron 1 of 23) 18312 ENSMUSG00000025314.16 ENSMUSG00000025314 ENSMUST00000168621 Ptprj protein_coding Interval_168587 chr9 83899699 83899967 + 0 NA Intergenic Intergenic 25189 ENSMUSG00000111769.1 ENSMUSG00000111769 ENSMUST00000217030 Gm36278 lincRNA Interval_65072 chr16 18858486 18859179 + 0 NA intron (ENSMUSG00000099908.1, intron 2 of 23) protein_coding-intron (ENSMUSG00000099908.1, intron 2 of 23) 17777 ENSMUSG00000022706.16 ENSMUSG00000022706 ENSMUST00000232123 Mrpl40 protein_coding Interval_20881 chr10 121706469 121707318 + 0 NA Intergenic Intergenic -1858 ENSMUSG00000112526.1 ENSMUSG00000112526 ENSMUST00000220180 Gm35865 lincRNA Interval_76530 chr17 80795517 80795696 + 0 NA Intergenic Intergenic 67475 ENSMUSG00000054957.5 ENSMUSG00000054957 ENSMUST00000068277 Gm9959 pseudogene Interval_457 chr1 5613671 5613860 + 0 NA Intergenic Intergenic 4465 ENSMUSG00000103936.1 ENSMUSG00000103936 ENSMUST00000193797 Gm36965 processed_pseudogene Interval_61531 chr15 82198974 82200135 + 0 NA intron (ENSMUSG00000022463.8, intron 3 of 5) protein_coding-intron (ENSMUSG00000022463.8, intron 16 of 18) 1432 ENSMUSG00000065465.1 ENSMUSG00000065465 ENSMUST00000083531 Mir33 miRNA Interval_31576 chr11 101467530 101468667 + 0 NA promoter-TSS (ENSMUSG00000001313.12) protein_coding-promoter-TSS (ENSMUSG00000001313.12) -1868 ENSMUSG00000034993.7 ENSMUSG00000034993 ENSMUST00000040430 Vat1 protein_coding Interval_41631 chr12 117203526 117204005 + 0 NA intron (ENSMUSG00000056553.14, intron 14 of 22) protein_coding-intron (ENSMUSG00000056553.14, intron 14 of 22) -47052 ENSMUSG00000065538.1 ENSMUSG00000065538 ENSMUST00000083604 Mir153 miRNA Interval_26538 chr11 58640390 58641152 + 0 NA exon (ENSMUSG00000037124.6, exon 1 of 6) protein_coding-exon (ENSMUSG00000037124.6, exon 1 of 6) 306 ENSMUSG00000037124.6 ENSMUSG00000037124 ENSMUST00000075084 Trim58 protein_coding Interval_170117 chr9 104921675 104922826 + 0 NA intron (ENSMUSG00000032564.16, intron 5 of 8) protein_coding-intron (ENSMUSG00000032564.16, intron 5 of 15) 49571 ENSMUSG00000032564.16 ENSMUSG00000032564 ENSMUST00000213452 Cpne4 protein_coding Interval_130143 chr5 124508888 124510124 + 0 NA intron (ENSMUSG00000029392.12, intron 1 of 4) protein_coding-intron (ENSMUSG00000029392.12, intron 4 of 6) -5535 ENSMUSG00000029392.12 ENSMUSG00000029392 ENSMUST00000199125 Rilpl1 protein_coding Interval_70134 chr17 5694781 5695733 + 0 NA intron (ENSMUSG00000034265.8, intron 3 of 8) protein_coding-intron (ENSMUSG00000034265.8, intron 3 of 8) -104234 ENSMUSG00000096965.7 ENSMUSG00000096965 ENSMUST00000181392 3300005D01Rik lincRNA Interval_13911 chr10 24590344 24591766 + 0 NA intron (ENSMUSG00000087400.8, intron 1 of 3) processed_transcript-intron (ENSMUSG00000087400.8, intron 1 of 3) -4671 ENSMUSG00000019997.11 ENSMUSG00000019997 ENSMUST00000129142 Ccn2 protein_coding Interval_33906 chr11 119297841 119299840 + 0 NA intron (ENSMUSG00000025580.15, intron 1 of 1) protein_coding-intron (ENSMUSG00000025580.15, intron 1 of 11) -9764 ENSMUSG00000025580.15 ENSMUSG00000025580 ENSMUST00000134743 Eif4a3 protein_coding Interval_88086 chr19 58942838 58944171 + 0 NA promoter-TSS (ENSMUSG00000048029.10) protein_coding-promoter-TSS (ENSMUSG00000048029.10) -9673 ENSMUSG00000048029.10 ENSMUSG00000048029 ENSMUST00000201123 Eno4 protein_coding Interval_106259 chr3 94967865 94968201 + 0 NA Intergenic Intergenic -5985 ENSMUSG00000087660.1 ENSMUSG00000087660 ENSMUST00000125186 B230398E01Rik antisense Interval_149419 chr7 98354629 98354858 + 0 NA intron (ENSMUSG00000049580.12, intron 2 of 2) protein_coding-intron (ENSMUSG00000049580.12, intron 2 of 3) 5444 ENSMUSG00000049580.12 ENSMUSG00000049580 ENSMUST00000206770 Tsku protein_coding Interval_161034 chr8 117060314 117061016 + 0 NA intron (ENSMUSG00000034416.18, intron 9 of 42) protein_coding-intron (ENSMUSG00000034416.18, intron 9 of 42) 24168 ENSMUSG00000085688.1 ENSMUSG00000085688 ENSMUST00000153724 Gm15395 antisense Interval_32867 chr11 112566856 112567070 + 0 NA Intergenic Intergenic 144377 ENSMUSG00000041674.16 ENSMUSG00000041674 ENSMUST00000148724 BC006965 processed_transcript Interval_49536 chr13 112790719 112791182 + 0 NA Intergenic Intergenic -9913 ENSMUSG00000021759.14 ENSMUSG00000021759 ENSMUST00000070951 Plpp1 protein_coding Interval_156518 chr8 49174825 49175676 + 0 NA Intergenic Intergenic 56719 ENSMUSG00000110465.1 ENSMUSG00000110465 ENSMUST00000212762 Gm45832 TEC Interval_164268 chr9 34797374 34797592 + 0 NA intron (ENSMUSG00000032036.15, intron 1 of 15) protein_coding-intron (ENSMUSG00000032036.15, intron 1 of 16) 132026 ENSMUSG00000053889.5 ENSMUSG00000053889 ENSMUST00000066604 Kirrel3os antisense Interval_57901 chr15 25235683 25236587 + 0 NA intron (ENSMUSG00000051237.7, intron 1 of 3) lincRNA-intron (ENSMUSG00000051237.7, intron 1 of 3) 2695 ENSMUSG00000051237.7 ENSMUSG00000051237 ENSMUST00000228644 9230109A22Rik lincRNA Interval_59552 chr15 55240678 55241407 + 0 NA intron (ENSMUSG00000022419.16, intron 8 of 8) protein_coding-intron (ENSMUSG00000022419.16, intron 8 of 8) 21561 ENSMUSG00000095792.1 ENSMUSG00000095792 ENSMUST00000179457 Gm26296 snRNA Interval_162908 chr9 12753845 12754121 + 0 NA Intergenic Intergenic -26182 ENSMUSG00000089477.1 ENSMUSG00000089477 ENSMUST00000158852 Gm25365 rRNA Interval_112222 chr4 36549748 36551124 + 0 NA intron (ENSMUSG00000045083.14, intron 2 of 6) protein_coding-intron (ENSMUSG00000045083.14, intron 2 of 7) 95017 ENSMUSG00000077851.1 ENSMUSG00000077851 ENSMUST00000104659 Mir876 miRNA Interval_19869 chr10 110744869 110745963 + 0 NA promoter-TSS (ENSMUSG00000020185.16) protein_coding-promoter-TSS (ENSMUSG00000020185.16) -49 ENSMUSG00000020185.16 ENSMUSG00000020185 ENSMUST00000174593 E2f7 protein_coding Interval_134819 chr6 31837442 31839021 + 0 NA intron (ENSMUSG00000087379.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000087379.1, intron 1 of 2) 51556 ENSMUSG00000087379.1 ENSMUSG00000087379 ENSMUST00000153328 Gm13849 lincRNA Interval_71490 chr17 24120545 24121308 + 0 NA promoter-TSS (ENSMUSG00000024122.16) protein_coding-promoter-TSS (ENSMUSG00000024122.16) -132 ENSMUSG00000024122.16 ENSMUSG00000024122 ENSMUST00000128997 Pdpk1 protein_coding Interval_122748 chr5 25081582 25083134 + 0 NA intron (ENSMUSG00000028944.14, intron 1 of 15) protein_coding-intron (ENSMUSG00000028944.14, intron 1 of 15) -18625 ENSMUSG00000043833.6 ENSMUSG00000043833 ENSMUST00000128569 2900005J15Rik processed_transcript Interval_126446 chr5 88614400 88615136 + 0 NA intron (ENSMUSG00000029291.11, intron 3 of 14) protein_coding-intron (ENSMUSG00000029291.11, intron 1 of 12) -31923 ENSMUSG00000029291.11 ENSMUSG00000029291 ENSMUST00000199956 Rufy3 protein_coding Interval_120455 chr4 148723000 148724924 + 0 NA Intergenic Intergenic 10259 ENSMUSG00000087273.1 ENSMUSG00000087273 ENSMUST00000139895 Gm13203 lincRNA Interval_169823 chr9 102213118 102213523 + 0 NA intron (ENSMUSG00000032537.15, intron 2 of 4) protein_coding-intron (ENSMUSG00000032537.15, intron 2 of 15) 40582 ENSMUSG00000102963.1 ENSMUSG00000102963 ENSMUST00000192536 Gm37945 TEC Interval_105370 chr3 85600852 85601331 + 0 NA intron (ENSMUSG00000028085.12, intron 2 of 12) protein_coding-intron (ENSMUSG00000028085.12, intron 2 of 12) 26959 ENSMUSG00000028085.12 ENSMUSG00000028085 ENSMUST00000029726 Gatb protein_coding Interval_62974 chr15 98402158 98403050 + 0 NA intron (ENSMUSG00000099353.7, intron 3 of 6) transcribed_unitary_pseudogene-intron (ENSMUSG00000099353.7, intron 4 of 7) 3539 ENSMUSG00000099353.7 ENSMUSG00000099353 ENSMUST00000231222 1700031M16Rik transcribed_unitary_pseudogene Interval_94391 chr2 90703370 90703870 + 0 NA intron (ENSMUSG00000051329.13, intron 17 of 36) protein_coding-intron (ENSMUSG00000051329.13, intron 17 of 36) 18449 ENSMUSG00000051329.13 ENSMUSG00000051329 ENSMUST00000126503 Nup160 protein_coding Interval_118323 chr4 130297112 130297750 + 0 NA Intergenic Intergenic -11164 ENSMUSG00000028773.8 ENSMUSG00000028773 ENSMUST00000070532 Fabp3 protein_coding Interval_39733 chr12 95802765 95803409 + 0 NA Intergenic Intergenic 68977 ENSMUSG00000112067.1 ENSMUSG00000112067 ENSMUST00000217888 Gm48015 TEC Interval_69769 chr16 96144870 96146054 + 0 NA promoter-TSS (ENSMUSG00000023147.17) protein_coding-promoter-TSS (ENSMUSG00000023147.17) 55 ENSMUSG00000023147.17 ENSMUSG00000023147 ENSMUST00000232884 Get1 protein_coding Interval_78125 chr18 8852641 8852863 + 0 NA Intergenic Intergenic -75483 ENSMUSG00000103172.1 ENSMUSG00000103172 ENSMUST00000195097 Gm37148 TEC Interval_107920 chr3 116798473 116799078 + 0 NA intron (ENSMUSG00000033400.14, intron 1 of 32) protein_coding-intron (ENSMUSG00000033400.14, intron 2 of 33) 8642 ENSMUSG00000033400.14 ENSMUSG00000033400 ENSMUST00000159670 Agl protein_coding Interval_160619 chr8 111090084 111090464 + 0 NA intron (ENSMUSG00000033633.15, intron 2 of 13) protein_coding-intron (ENSMUSG00000033633.15, intron 2 of 13) -4381 ENSMUSG00000033624.10 ENSMUSG00000033624 ENSMUST00000144377 Pdpr protein_coding Interval_90135 chr2 28455380 28455878 + 0 NA TTS (ENSMUSG00000035829.13) protein_coding-TTS (ENSMUSG00000035829.13) 7688 ENSMUSG00000035829.13 ENSMUSG00000035829 ENSMUST00000040324 Ppp1r26 protein_coding Interval_109408 chr3 141941162 141941388 + 0 NA intron (ENSMUSG00000052430.15, intron 2 of 11) protein_coding-intron (ENSMUSG00000052430.15, intron 1 of 10) -9767 ENSMUSG00000052430.15 ENSMUSG00000052430 ENSMUST00000106230 Bmpr1b protein_coding Interval_109911 chr3 151124994 151125180 + 0 NA Intergenic Intergenic -1169 ENSMUSG00000104816.1 ENSMUSG00000104816 ENSMUST00000200442 Gm43473 TEC Interval_81512 chr18 61293834 61294358 + 0 NA Intergenic Intergenic 19073 ENSMUSG00000024575.16 ENSMUSG00000024575 ENSMUST00000135688 Pde6a protein_coding Interval_113352 chr4 53738949 53739513 + 0 NA intron (ENSMUSG00000028414.17, intron 7 of 11) protein_coding-intron (ENSMUSG00000028414.17, intron 5 of 8) -18031 ENSMUSG00000089621.1 ENSMUSG00000089621 ENSMUST00000158996 Gm25445 misc_RNA Interval_157168 chr8 66820518 66820862 + 0 NA Intergenic Intergenic -25107 ENSMUSG00000110533.1 ENSMUSG00000110533 ENSMUST00000212284 LOC665443 processed_pseudogene Interval_85715 chr19 29996510 29997603 + 0 NA Intergenic Intergenic -6734 ENSMUSG00000024815.5 ENSMUSG00000024815 ENSMUST00000025727 Trpd52l3 protein_coding Interval_45374 chr13 54716843 54717740 + 0 NA intron (ENSMUSG00000034918.8, intron 7 of 31) protein_coding-intron (ENSMUSG00000034918.8, intron 7 of 31) 15830 ENSMUSG00000034918.8 ENSMUSG00000034918 ENSMUST00000037145 Cdhr2 protein_coding Interval_103862 chr3 53827351 53827807 + 0 NA Intergenic Intergenic -15828 ENSMUSG00000088653.1 ENSMUSG00000088653 ENSMUST00000158028 Gm24851 snRNA Interval_106830 chr3 101161757 101162406 + 0 NA Intergenic Intergenic 45318 ENSMUSG00000082415.1 ENSMUSG00000082415 ENSMUST00000120887 Gm12486 processed_pseudogene Interval_73421 chr17 37114433 37114645 + 0 NA TTS (ENSMUSG00000092339.1) processed_pseudogene-TTS (ENSMUSG00000092339.1) 684 ENSMUSG00000092339.1 ENSMUSG00000092339 ENSMUST00000174626 Gm4831 processed_pseudogene Interval_52495 chr14 47003802 47004593 + 0 NA TTS (ENSMUSG00000021838.17) protein_coding-TTS (ENSMUSG00000021838.17) 42757 ENSMUSG00000089870.1 ENSMUSG00000089870 ENSMUST00000161397 Gm15562 sense_intronic Interval_150902 chr7 116247547 116247887 + 0 NA intron (ENSMUSG00000045659.18, intron 3 of 18) protein_coding-intron (ENSMUSG00000045659.18, intron 3 of 26) 35026 ENSMUSG00000108650.1 ENSMUSG00000108650 ENSMUST00000205675 Gm44867 sense_intronic Interval_60624 chr15 75769928 75770165 + 0 NA intron (ENSMUSG00000075600.3, intron 9 of 11) protein_coding-intron (ENSMUSG00000075600.3, intron 9 of 11) 10187 ENSMUSG00000077416.1 ENSMUSG00000077416 ENSMUST00000104228 Gm23747 snoRNA Interval_29047 chr11 80047124 80047921 + 0 NA TTS (ENSMUSG00000017561.16) protein_coding-TTS (ENSMUSG00000017561.16) 33339 ENSMUSG00000017561.16 ENSMUSG00000017561 ENSMUST00000178280 Crlf3 protein_coding Interval_54538 chr14 70554037 70555464 + 0 NA TTS (ENSMUSG00000022096.14) protein_coding-TTS (ENSMUSG00000022096.14) -1150 ENSMUSG00000022096.14 ENSMUSG00000022096 ENSMUST00000163060 Hr protein_coding Interval_58891 chr15 39756228 39756755 + 0 NA intron (ENSMUSG00000022303.9, intron 2 of 2) protein_coding-intron (ENSMUSG00000022303.9, intron 2 of 3) 10557 ENSMUSG00000022303.9 ENSMUSG00000022303 ENSMUST00000227792 Dcstamp protein_coding Interval_90395 chr2 30159420 30160110 + 0 NA exon (ENSMUSG00000085401.2, exon 1 of 1) processed_pseudogene-exon (ENSMUSG00000085401.2, exon 1 of 1) 367 ENSMUSG00000085401.2 ENSMUSG00000085401 ENSMUST00000120862 Slc39a1-ps processed_pseudogene Interval_101531 chr3 4155722 4156042 + 0 NA Intergenic Intergenic -55836 ENSMUSG00000091223.2 ENSMUSG00000091223 ENSMUST00000170943 Gm8775 processed_pseudogene Interval_94652 chr2 93045182 93046403 + 0 NA promoter-TSS (ENSMUSG00000075028.12) protein_coding-promoter-TSS (ENSMUSG00000075028.12) -221 ENSMUSG00000075028.12 ENSMUSG00000075028 ENSMUST00000147339 Prdm11 protein_coding Interval_122386 chr5 21874864 21875698 + 0 NA Intergenic Intergenic -14499 ENSMUSG00000090008.1 ENSMUSG00000090008 ENSMUST00000162128 Gm16111 processed_pseudogene Interval_8946 chr1 152609948 152610151 + 0 NA intron (ENSMUSG00000026482.13, intron 2 of 17) protein_coding-intron (ENSMUSG00000026482.13, intron 2 of 17) -57005 ENSMUSG00000026482.13 ENSMUSG00000026482 ENSMUST00000149536 Rgl1 protein_coding Interval_102381 chr3 22897303 22897945 + 0 NA Intergenic Intergenic 85417 ENSMUSG00000102233.1 ENSMUSG00000102233 ENSMUST00000194174 Gm37889 TEC Interval_80198 chr18 38185213 38186075 + 0 NA TTS (ENSMUSG00000051375.15) protein_coding-TTS (ENSMUSG00000051375.15) 18196 ENSMUSG00000051375.15 ENSMUSG00000051375 ENSMUST00000193828 Pcdh1 protein_coding Interval_131381 chr5 136819598 136820645 + 0 NA intron (ENSMUSG00000004415.15, intron 3 of 3) protein_coding-intron (ENSMUSG00000004415.15, intron 3 of 12) 18188 ENSMUSG00000004415.15 ENSMUSG00000004415 ENSMUST00000140245 Col26a1 protein_coding Interval_6794 chr1 119504136 119505323 + 0 NA promoter-TSS (ENSMUSG00000004451.14) protein_coding-promoter-TSS (ENSMUSG00000004451.14) 65 ENSMUSG00000004451.14 ENSMUSG00000004451 ENSMUST00000156213 Ralb protein_coding Interval_39715 chr12 94661881 94662408 + 0 NA Intergenic Intergenic -95431 ENSMUSG00000113414.1 ENSMUSG00000113414 ENSMUST00000220917 Gm18504 processed_pseudogene Interval_56329 chr14 117551066 117551302 + 0 NA intron (ENSMUSG00000058571.11, intron 3 of 9) protein_coding-intron (ENSMUSG00000058571.11, intron 3 of 8) 402663 ENSMUSG00000098648.1 ENSMUSG00000098648 ENSMUST00000183564 Mir6239 miRNA Interval_82326 chr18 70677576 70678850 + 0 NA Intergenic Intergenic 28284 ENSMUSG00000118309.1 ENSMUSG00000118309 ENSMUST00000237754 Gm50261 lincRNA Interval_24635 chr11 35484244 35484652 + 0 NA intron (ENSMUSG00000056427.10, intron 2 of 3) protein_coding-intron (ENSMUSG00000056427.10, intron 4 of 35) -132368 ENSMUSG00000065583.1 ENSMUSG00000065583 ENSMUST00000083649 Mir218-2 miRNA Interval_71587 chr17 24697901 24698788 + 0 NA promoter-TSS (ENSMUSG00000019320.14) protein_coding-promoter-TSS (ENSMUSG00000019320.14) 30 ENSMUSG00000019320.14 ENSMUSG00000019320 ENSMUST00000150313 Noxo1 protein_coding Interval_155521 chr8 34079336 34080797 + 0 NA Intergenic Intergenic 14972 ENSMUSG00000031516.11 ENSMUSG00000031516 ENSMUST00000143411 Dctn6 protein_coding Interval_72447 chr17 29858702 29858947 + 0 NA intron (ENSMUSG00000043557.16, intron 1 of 4) protein_coding-intron (ENSMUSG00000043557.16, intron 1 of 15) -18843 ENSMUSG00000043557.16 ENSMUSG00000043557 ENSMUST00000167102 Mdga1 protein_coding Interval_146472 chr7 46203723 46203983 + 0 NA promoter-TSS (ENSMUSG00000110060.1) TEC-promoter-TSS (ENSMUSG00000110060.1) -696 ENSMUSG00000110060.1 ENSMUSG00000110060 ENSMUST00000211426 Gm9860 TEC Interval_173983 chrX 122179197 122179950 + 0 NA Intergenic Intergenic 40572 ENSMUSG00000081095.2 ENSMUSG00000081095 ENSMUST00000119859 Gm14946 processed_pseudogene Interval_143956 chr7 18511373 18513072 + 0 NA promoter-TSS (ENSMUSG00000109355.1) processed_pseudogene-promoter-TSS (ENSMUSG00000109355.1) -592 ENSMUSG00000109355.1 ENSMUSG00000109355 ENSMUST00000207645 Gm4880 processed_pseudogene Interval_71018 chr17 17228566 17229312 + 0 NA Intergenic Intergenic -33411 ENSMUSG00000116802.1 ENSMUSG00000116802 ENSMUST00000231376 Gm5165 lincRNA Interval_43909 chr13 37993606 37994740 + 0 NA promoter-TSS (ENSMUSG00000021427.10) protein_coding-promoter-TSS (ENSMUSG00000021427.10) -90 ENSMUSG00000021427.10 ENSMUSG00000021427 ENSMUST00000224399 Ssr1 protein_coding Interval_145052 chr7 29757697 29758186 + 0 NA Intergenic Intergenic 6722 ENSMUSG00000109205.1 ENSMUSG00000109205 ENSMUST00000208513 Gm44954 processed_pseudogene Interval_7238 chr1 128115025 128115735 + 0 NA intron (ENSMUSG00000056211.13, intron 1 of 11) protein_coding-intron (ENSMUSG00000056211.13, intron 1 of 26) 13509 ENSMUSG00000101535.1 ENSMUSG00000101535 ENSMUST00000188284 Gm29383 processed_pseudogene Interval_114651 chr4 83467767 83468606 + 0 NA TTS (ENSMUSG00000028483.13) protein_coding-TTS (ENSMUSG00000028483.13) -7894 ENSMUSG00000028484.16 ENSMUSG00000028484 ENSMUST00000130626 Psip1 protein_coding Interval_91517 chr2 40362086 40362861 + 0 NA Intergenic Intergenic 63956 ENSMUSG00000088512.1 ENSMUSG00000088512 ENSMUST00000157887 Gm24467 snoRNA Interval_34176 chr11 121104169 121104956 + 0 NA Intergenic Intergenic 2565 ENSMUSG00000082510.1 ENSMUSG00000082510 ENSMUST00000120433 Gm11793 processed_pseudogene Interval_28859 chr11 78807579 78808266 + 0 NA Intergenic Intergenic -16465 ENSMUSG00000088748.1 ENSMUSG00000088748 ENSMUST00000158123 Gm23219 snRNA Interval_135004 chr6 34493258 34493915 + 0 NA intron (ENSMUSG00000038871.5, intron 2 of 2) protein_coding-intron (ENSMUSG00000038871.5, intron 2 of 2) 16444 ENSMUSG00000038871.5 ENSMUSG00000038871 ENSMUST00000149131 Bpgm protein_coding Interval_19414 chr10 99051087 99051638 + 0 NA Intergenic Intergenic 11890 ENSMUSG00000112660.1 ENSMUSG00000112660 ENSMUST00000219298 Gm48761 TEC Interval_69508 chr16 93946634 93947872 + 0 NA intron (ENSMUSG00000047109.13, intron 1 of 2) protein_coding-intron (ENSMUSG00000047109.13, intron 1 of 2) -4869 ENSMUSG00000047109.13 ENSMUSG00000047109 ENSMUST00000232406 Cldn14 protein_coding Interval_12031 chr1 188985605 188985848 + 0 NA intron (ENSMUSG00000026608.13, intron 10 of 12) protein_coding-intron (ENSMUSG00000026608.13, intron 10 of 17) 22115 ENSMUSG00000026608.13 ENSMUSG00000026608 ENSMUST00000193273 Kctd3 protein_coding Interval_174719 chrX 164047338 164050008 + 0 NA Intergenic Intergenic -20692 ENSMUSG00000031373.4 ENSMUSG00000031373 ENSMUST00000126650 Car5b protein_coding Interval_96498 chr2 125114774 125114980 + 0 NA intron (ENSMUSG00000027201.16, intron 3 of 18) protein_coding-intron (ENSMUSG00000027201.16, intron 3 of 15) 8749 ENSMUSG00000027201.16 ENSMUSG00000027201 ENSMUST00000149911 Myef2 protein_coding Interval_159957 chr8 105413243 105414170 + 0 NA promoter-TSS (ENSMUSG00000051648.13) protein_coding-promoter-TSS (ENSMUSG00000051648.13) 78 ENSMUSG00000054320.16 ENSMUSG00000054320 ENSMUST00000216457 Lrrc36 protein_coding Interval_144500 chr7 25480644 25481716 + 0 NA intron (ENSMUSG00000053714.8, intron 4 of 6) antisense-intron (ENSMUSG00000053714.8, intron 4 of 6) -3597 ENSMUSG00000074272.10 ENSMUSG00000074272 ENSMUST00000206981 Ceacam1 protein_coding Interval_109220 chr3 137977088 137978040 + 0 NA intron (ENSMUSG00000028159.14, intron 1 of 8) protein_coding-intron (ENSMUSG00000028159.14, intron 1 of 8) -22851 ENSMUSG00000028159.14 ENSMUSG00000028159 ENSMUST00000199541 Dapp1 protein_coding Interval_16669 chr10 66940448 66940647 + 0 NA Intergenic Intergenic 20245 ENSMUSG00000097921.2 ENSMUSG00000097921 ENSMUST00000181018 Gm26576 lincRNA Interval_56962 chr14 124191753 124193124 + 0 NA exon (ENSMUSG00000025551.13, exon 1 of 5) protein_coding-exon (ENSMUSG00000025551.13, exon 1 of 5) 204803 ENSMUSG00000099994.1 ENSMUSG00000099994 ENSMUST00000190088 1700024B18Rik antisense Interval_150435 chr7 110605417 110607585 + 0 NA intron (ENSMUSG00000038371.15, intron 1 of 18) protein_coding-intron (ENSMUSG00000038371.15, intron 1 of 40) -21527 ENSMUSG00000030790.15 ENSMUSG00000030790 ENSMUST00000185766 Adm protein_coding Interval_71722 chr17 25696476 25696926 + 0 NA Intergenic Intergenic 2148 ENSMUSG00000117791.1 ENSMUSG00000117791 ENSMUST00000237100 4930541O19Rik lincRNA Interval_33745 chr11 118240544 118241283 + 0 NA intron (ENSMUSG00000017132.17, intron 1 of 12) protein_coding-intron (ENSMUSG00000017132.17, intron 1 of 12) -28171 ENSMUSG00000017132.17 ENSMUSG00000017132 ENSMUST00000151165 Cyth1 protein_coding Interval_167958 chr9 74968319 74969411 + 0 NA intron (ENSMUSG00000034858.16, intron 2 of 12) protein_coding-intron (ENSMUSG00000034858.16, intron 2 of 12) 15981 ENSMUSG00000034858.16 ENSMUSG00000034858 ENSMUST00000081746 Fam214a protein_coding Interval_24028 chr11 29631891 29632133 + 0 NA intron (ENSMUSG00000084850.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000084850.1, intron 1 of 2) 13497 ENSMUSG00000084850.1 ENSMUSG00000084850 ENSMUST00000125194 Gm12092 lincRNA Interval_115591 chr4 101174822 101175716 + 0 NA intron (ENSMUSG00000028530.14, intron 8 of 24) protein_coding-intron (ENSMUSG00000028530.14, intron 8 of 24) -11495 ENSMUSG00000077677.1 ENSMUSG00000077677 ENSMUST00000104489 Gm24468 snRNA Interval_35949 chr12 32619847 32620665 + 0 NA Intergenic Intergenic 53038 ENSMUSG00000112617.1 ENSMUSG00000112617 ENSMUST00000220414 Gm47937 processed_pseudogene Interval_48580 chr13 100461433 100462198 + 0 NA intron (ENSMUSG00000021639.17, intron 4 of 4) protein_coding-intron (ENSMUSG00000021639.17, intron 17 of 17) -6117 ENSMUSG00000113596.1 ENSMUSG00000113596 ENSMUST00000222510 Gm48452 processed_pseudogene Interval_107947 chr3 117114326 117114541 + 0 NA Intergenic Intergenic -12919 ENSMUSG00000106343.1 ENSMUSG00000106343 ENSMUST00000197534 Gm18430 processed_pseudogene Interval_88647 chr2 8673942 8674999 + 0 NA Intergenic Intergenic 40533 ENSMUSG00000084374.1 ENSMUSG00000084374 ENSMUST00000117255 Gm13255 processed_pseudogene Interval_81175 chr18 55693279 55693546 + 0 NA Intergenic Intergenic 52816 ENSMUSG00000098119.1 ENSMUSG00000098119 ENSMUST00000182376 Gm26959 processed_pseudogene Interval_14851 chr10 40499370 40500111 + 0 NA Intergenic Intergenic -49152 ENSMUSG00000111251.1 ENSMUSG00000111251 ENSMUST00000214826 Gm18671 processed_pseudogene Interval_81069 chr18 53550875 53551375 + 0 NA promoter-TSS (ENSMUSG00000069378.14) protein_coding-promoter-TSS (ENSMUSG00000069378.14) 87542 ENSMUSG00000069378.14 ENSMUSG00000069378 ENSMUST00000115398 Prdm6 protein_coding Interval_142527 chr6 143091004 143091236 + 0 NA intron (ENSMUSG00000030279.15, intron 2 of 24) protein_coding-intron (ENSMUSG00000030279.15, intron 2 of 24) 8970 ENSMUSG00000030279.15 ENSMUSG00000030279 ENSMUST00000205079 C2cd5 protein_coding Interval_168193 chr9 77874615 77874843 + 0 NA Intergenic Intergenic 23021 ENSMUSG00000111580.1 ENSMUSG00000111580 ENSMUST00000214326 Gm19572 processed_pseudogene Interval_8722 chr1 149960708 149961674 + 0 NA promoter-TSS (ENSMUSG00000056220.14) protein_coding-promoter-TSS (ENSMUSG00000056220.14) 67 ENSMUSG00000056220.14 ENSMUSG00000056220 ENSMUST00000134676 Pla2g4a protein_coding Interval_87166 chr19 46562069 46562870 + 0 NA intron (ENSMUSG00000025035.9, intron 1 of 6) protein_coding-intron (ENSMUSG00000025035.9, intron 1 of 5) -4077 ENSMUSG00000025035.9 ENSMUSG00000025035 ENSMUST00000235489 Arl3 protein_coding Interval_166206 chr9 57488207 57488499 + 0 NA Intergenic Intergenic 4390 ENSMUSG00000074280.6 ENSMUSG00000074280 ENSMUST00000098689 Gm6166 processed_pseudogene Interval_92420 chr2 59637156 59637796 + 0 NA intron (ENSMUSG00000035168.16, intron 1 of 1) protein_coding-intron (ENSMUSG00000035168.16, intron 1 of 26) -72792 ENSMUSG00000081157.1 ENSMUSG00000081157 ENSMUST00000118837 Gm13552 processed_pseudogene Interval_53904 chr14 63244501 63246701 + 0 NA promoter-TSS (ENSMUSG00000021944.15) protein_coding-promoter-TSS (ENSMUSG00000021944.15) 25523 ENSMUSG00000021944.15 ENSMUSG00000021944 ENSMUST00000156782 Gata4 protein_coding Interval_59065 chr15 42950597 42950836 + 0 NA Intergenic Intergenic 220110 ENSMUSG00000051920.7 ENSMUSG00000051920 ENSMUST00000226402 Rspo2 protein_coding Interval_155969 chr8 41328195 41328567 + 0 NA intron (ENSMUSG00000031592.10, intron 35 of 38) protein_coding-intron (ENSMUSG00000031592.10, intron 34 of 37) 46392 ENSMUSG00000031591.14 ENSMUSG00000031591 ENSMUST00000143057 Asah1 protein_coding Interval_20953 chr10 122717908 122718166 + 0 NA intron (ENSMUSG00000034613.12, intron 1 of 5) protein_coding-intron (ENSMUSG00000034613.12, intron 1 of 9) 38722 ENSMUSG00000099225.1 ENSMUSG00000099225 ENSMUST00000185165 Mir8104 miRNA Interval_130885 chr5 133474990 133475483 + 0 NA exon (ENSMUSG00000058905.5, exon 1 of 1) processed_pseudogene-exon (ENSMUSG00000058905.5, exon 1 of 1) 113 ENSMUSG00000058905.5 ENSMUSG00000058905 ENSMUST00000145209 Gm10051 processed_pseudogene Interval_3193 chr1 54612154 54613121 + 0 NA Intergenic Intergenic 35976 ENSMUSG00000052331.14 ENSMUSG00000052331 ENSMUST00000177679 Ankrd44 protein_coding Interval_94126 chr2 84530673 84531764 + 0 NA exon (ENSMUSG00000087362.7, exon 1 of 3) lincRNA-exon (ENSMUSG00000087362.7, exon 1 of 3) 104 ENSMUSG00000087362.7 ENSMUSG00000087362 ENSMUST00000139492 Gm13710 lincRNA Interval_80493 chr18 42732882 42733463 + 0 NA intron (ENSMUSG00000024500.20, intron 4 of 9) protein_coding-intron (ENSMUSG00000024500.20, intron 3 of 8) -110713 ENSMUSG00000117926.1 ENSMUSG00000117926 ENSMUST00000236808 C030004G16Rik lincRNA Interval_44729 chr13 47941751 47942908 + 0 NA Intergenic Intergenic 31894 ENSMUSG00000114959.1 ENSMUSG00000114959 ENSMUST00000223677 G630093K05Rik lincRNA Interval_32870 chr11 112608915 112609802 + 0 NA Intergenic Intergenic 101982 ENSMUSG00000041674.16 ENSMUSG00000041674 ENSMUST00000148724 BC006965 processed_transcript Interval_164582 chr9 39428829 39429258 + 0 NA Intergenic Intergenic -1895 ENSMUSG00000058856.3 ENSMUSG00000058856 ENSMUST00000073895 Olfr952 protein_coding Interval_33443 chr11 116565358 116565839 + 0 NA intron (ENSMUSG00000020802.8, intron 1 of 17) protein_coding-intron (ENSMUSG00000020802.8, intron 1 of 17) 15180 ENSMUSG00000083314.1 ENSMUSG00000083314 ENSMUST00000119903 Gm11742 processed_pseudogene Interval_122365 chr5 21712265 21712710 + 0 NA Intergenic Intergenic -11093 ENSMUSG00000044968.16 ENSMUSG00000044968 ENSMUST00000060899 Napepld protein_coding Interval_174429 chrX 152209039 152209721 + 0 NA exon (ENSMUSG00000041115.16, exon 5 of 14) protein_coding-exon (ENSMUSG00000041115.16, exon 5 of 14) -60426 ENSMUSG00000025332.14 ENSMUSG00000025332 ENSMUST00000155793 Kdm5c protein_coding Interval_94455 chr2 91334399 91335486 + 0 NA intron (ENSMUSG00000040591.18, intron 3 of 3) protein_coding-intron (ENSMUSG00000040591.18, intron 3 of 8) 9247 ENSMUSG00000081248.1 ENSMUSG00000081248 ENSMUST00000120422 Gm13787 processed_pseudogene Interval_154117 chr8 12857971 12859081 + 0 NA intron (ENSMUSG00000031441.15, intron 2 of 3) protein_coding-intron (ENSMUSG00000031441.15, intron 27 of 29) 10671 ENSMUSG00000031441.15 ENSMUSG00000031441 ENSMUST00000139545 Atp11a protein_coding Interval_130229 chr5 125087220 125087841 + 0 NA intron (ENSMUSG00000106663.1, intron 1 of 1) protein_coding-intron (ENSMUSG00000029478.16, intron 9 of 45) 689 ENSMUSG00000106663.1 ENSMUSG00000106663 ENSMUST00000198978 Gm42839 antisense Interval_142831 chr6 146280898 146281839 + 0 NA intron (ENSMUSG00000030287.15, intron 36 of 55) protein_coding-intron (ENSMUSG00000030287.15, intron 37 of 56) -10388 ENSMUSG00000107801.1 ENSMUSG00000107801 ENSMUST00000203251 Gm44086 TEC Interval_95388 chr2 107808503 107808860 + 0 NA Intergenic Intergenic 77958 ENSMUSG00000077480.1 ENSMUSG00000077480 ENSMUST00000104292 Gm23439 snoRNA Interval_173220 chrX 74328451 74329672 + 0 NA promoter-TSS (ENSMUSG00000031398.13) protein_coding-promoter-TSS (ENSMUSG00000031398.13) -3396 ENSMUSG00000031398.13 ENSMUSG00000031398 ENSMUST00000137484 Plxna3 protein_coding Interval_65901 chr16 30127030 30127518 + 0 NA Intergenic Intergenic -12185 ENSMUSG00000116887.1 ENSMUSG00000116887 ENSMUST00000231327 Gm6029 processed_pseudogene Interval_94885 chr2 100187966 100189441 + 0 NA Intergenic Intergenic 129770 ENSMUSG00000082259.1 ENSMUSG00000082259 ENSMUST00000121353 Gm13808 processed_pseudogene Interval_150920 chr7 116345117 116345371 + 0 NA intron (ENSMUSG00000030660.9, intron 13 of 17) protein_coding-intron (ENSMUSG00000030660.9, intron 28 of 32) -4615 ENSMUSG00000030660.9 ENSMUSG00000030660 ENSMUST00000205767 Pik3c2a protein_coding Interval_89474 chr2 20879709 20881080 + 0 NA exon (ENSMUSG00000036591.16, exon 9 of 26) protein_coding-exon (ENSMUSG00000036591.16, exon 9 of 26) -20598 ENSMUSG00000036591.16 ENSMUSG00000036591 ENSMUST00000173654 Arhgap21 protein_coding Interval_29971 chr11 88456404 88456875 + 0 NA intron (ENSMUSG00000069769.13, intron 2 of 5) protein_coding-intron (ENSMUSG00000069769.13, intron 7 of 13) -23125 ENSMUSG00000084411.2 ENSMUSG00000084411 ENSMUST00000120278 Gm11510 processed_pseudogene Interval_26452 chr11 57948979 57949184 + 0 NA promoter-TSS (ENSMUSG00000083657.1) processed_pseudogene-promoter-TSS (ENSMUSG00000083657.1) 4 ENSMUSG00000083657.1 ENSMUSG00000083657 ENSMUST00000117266 Gm12245 processed_pseudogene Interval_159988 chr8 105613266 105614767 + 0 NA intron (ENSMUSG00000038604.9, intron 1 of 21) protein_coding-intron (ENSMUSG00000038604.9, intron 1 of 21) -1450 ENSMUSG00000089432.1 ENSMUSG00000089432 ENSMUST00000158807 Mir1966 miRNA Interval_137289 chr6 71089496 71090134 + 0 NA Intergenic Intergenic 16696 ENSMUSG00000107446.1 ENSMUSG00000107446 ENSMUST00000203194 Gm43906 TEC Interval_145603 chr7 35879831 35880550 + 0 NA Intergenic Intergenic 41930 ENSMUSG00000100387.1 ENSMUSG00000100387 ENSMUST00000187488 Gm28514 lincRNA Interval_61011 chr15 78756197 78757553 + 0 NA intron (ENSMUSG00000018169.12, intron 7 of 7) protein_coding-intron (ENSMUSG00000018169.12, intron 7 of 7) 10289 ENSMUSG00000018169.12 ENSMUSG00000018169 ENSMUST00000128389 Mfng protein_coding Interval_3663 chr1 60488340 60488690 + 0 NA exon (ENSMUSG00000026014.15, exon 14 of 14) protein_coding-exon (ENSMUSG00000026014.15, exon 14 of 14) 14750 ENSMUSG00000026014.15 ENSMUSG00000026014 ENSMUST00000142258 Raph1 protein_coding Interval_129196 chr5 118125476 118126108 + 0 NA intron (ENSMUSG00000032867.8, intron 3 of 7) protein_coding-intron (ENSMUSG00000032867.8, intron 3 of 10) 23102 ENSMUSG00000088293.1 ENSMUSG00000088293 ENSMUST00000157668 Gm26411 snRNA Interval_96232 chr2 120756016 120756426 + 0 NA intron (ENSMUSG00000027284.16, intron 10 of 40) protein_coding-intron (ENSMUSG00000090100.7, intron 11 of 15) -27583 ENSMUSG00000027284.16 ENSMUSG00000027284 ENSMUST00000136725 Cdan1 protein_coding Interval_17404 chr10 76391334 76392710 + 0 NA intron (ENSMUSG00000101695.1, intron 2 of 4) protein_coding-intron (ENSMUSG00000001151.10, intron 24 of 41) 3007 ENSMUSG00000101695.1 ENSMUSG00000101695 ENSMUST00000187079 1700094J05Rik antisense Interval_83485 chr18 86947186 86947396 + 0 NA Intergenic Intergenic -20373 ENSMUSG00000117908.1 ENSMUSG00000117908 ENSMUST00000236018 Gm5971 processed_pseudogene Interval_26987 chr11 62171240 62171584 + 0 NA intron (ENSMUSG00000042331.13, intron 12 of 14) protein_coding-intron (ENSMUSG00000042331.13, intron 10 of 12) 53993 ENSMUSG00000118644.1 ENSMUSG00000118644 ENSMUST00000239393 AL592080.1 unprocessed_pseudogene Interval_38955 chr12 84075507 84075980 + 0 NA exon (ENSMUSG00000042540.12, exon 3 of 3) protein_coding-exon (ENSMUSG00000042540.12, exon 3 of 3) 6418 ENSMUSG00000042540.12 ENSMUSG00000042540 ENSMUST00000072505 Acot5 protein_coding Interval_160998 chr8 116790017 116791045 + 0 NA Intergenic Intergenic -25052 ENSMUSG00000074072.2 ENSMUSG00000074072 ENSMUST00000098379 Gm10620 pseudogene Interval_51411 chr14 27318993 27320068 + 0 NA intron (ENSMUSG00000021895.10, intron 5 of 13) protein_coding-intron (ENSMUSG00000021895.10, intron 2 of 10) 61320 ENSMUSG00000093034.1 ENSMUSG00000093034 ENSMUST00000175293 Gm23633 miRNA Interval_141005 chr6 124297470 124298100 + 0 NA promoter-TSS (ENSMUSG00000107600.1) processed_pseudogene-promoter-TSS (ENSMUSG00000107600.1) -78 ENSMUSG00000107600.1 ENSMUSG00000107600 ENSMUST00000203226 Gm6308 processed_pseudogene Interval_29355 chr11 83417111 83417522 + 0 NA intron (ENSMUSG00000020684.14, intron 2 of 3) protein_coding-intron (ENSMUSG00000020684.14, intron 2 of 3) 7628 ENSMUSG00000020684.14 ENSMUSG00000020684 ENSMUST00000164425 Rasl10b protein_coding Interval_106989 chr3 102613721 102613894 + 0 NA Intergenic Intergenic 14434 ENSMUSG00000104619.1 ENSMUSG00000104619 ENSMUST00000197163 Gm42678 lincRNA Interval_11745 chr1 185153497 185153842 + 0 NA Intergenic Intergenic 61678 ENSMUSG00000104461.1 ENSMUSG00000104461 ENSMUST00000195649 Gm37662 lincRNA Interval_86591 chr19 41922808 41923152 + 0 NA TTS (ENSMUSG00000034321.14) protein_coding-TTS (ENSMUSG00000034321.14) 10268 ENSMUSG00000034321.14 ENSMUSG00000034321 ENSMUST00000237177 Exosc1 protein_coding Interval_147069 chr7 60622498 60622965 + 0 NA Intergenic Intergenic -21160 ENSMUSG00000109447.1 ENSMUSG00000109447 ENSMUST00000208725 Gm3198 processed_pseudogene Interval_143468 chr7 7060346 7061787 + 0 NA TTS (ENSMUSG00000109177.1) unprocessed_pseudogene-TTS (ENSMUSG00000109177.1) 2386 ENSMUSG00000109177.1 ENSMUSG00000109177 ENSMUST00000207209 Pafah1b1-ps2 unprocessed_pseudogene Interval_75958 chr17 73770711 73771139 + 0 NA Intergenic Intergenic -33209 ENSMUSG00000024065.8 ENSMUSG00000024065 ENSMUST00000024860 Ehd3 protein_coding Interval_7456 chr1 131501204 131502115 + 0 NA intron (ENSMUSG00000026425.15, intron 2 of 4) protein_coding-intron (ENSMUSG00000026425.15, intron 2 of 22) -2857 ENSMUSG00000076287.1 ENSMUSG00000076287 ENSMUST00000102332 Gm24273 miRNA Interval_45975 chr13 59726051 59726936 + 0 NA promoter-TSS (ENSMUSG00000114903.1) lincRNA-promoter-TSS (ENSMUSG00000114903.1) -231 ENSMUSG00000114903.1 ENSMUSG00000114903 ENSMUST00000224350 Gm46419 lincRNA Interval_108976 chr3 133808816 133810147 + 0 NA Intergenic Intergenic 9037 ENSMUSG00000104645.1 ENSMUSG00000104645 ENSMUST00000200327 Gm30484 lincRNA Interval_102979 chr3 33965122 33966087 + 0 NA Intergenic Intergenic -6404 ENSMUSG00000077559.1 ENSMUSG00000077559 ENSMUST00000104371 Gm23175 snoRNA Interval_98368 chr2 151876063 151876734 + 0 NA Intergenic Intergenic -9438 ENSMUSG00000086620.1 ENSMUSG00000086620 ENSMUST00000152229 Rspo4os antisense Interval_9428 chr1 157035394 157036898 + 0 NA intron (ENSMUSG00000101768.1, intron 2 of 2) lincRNA-intron (ENSMUSG00000101768.1, intron 2 of 2) -7401 ENSMUSG00000103325.1 ENSMUSG00000103325 ENSMUST00000193527 Gm10531 TEC Interval_131783 chr5 139838536 139838900 + 0 NA Intergenic Intergenic -6212 ENSMUSG00000064694.1 ENSMUSG00000064694 ENSMUST00000082760 Gm24146 misc_RNA Interval_117118 chr4 119676515 119676992 + 0 NA Intergenic Intergenic -17972 ENSMUSG00000032978.14 ENSMUSG00000032978 ENSMUST00000044426 Guca2b protein_coding Interval_149877 chr7 102177582 102177928 + 0 NA TTS (ENSMUSG00000063550.8) protein_coding-TTS (ENSMUSG00000063550.8) 5810 ENSMUSG00000063550.8 ENSMUSG00000063550 ENSMUST00000211375 Nup98 protein_coding Interval_73721 chr17 42985214 42986389 + 0 NA Intergenic Intergenic -30767 ENSMUSG00000023915.5 ENSMUSG00000023915 ENSMUST00000233482 Tnfrsf21 protein_coding Interval_75115 chr17 63577652 63577887 + 0 NA Intergenic Intergenic 6866 ENSMUSG00000117256.1 ENSMUSG00000117256 ENSMUST00000233628 Gm5497 processed_pseudogene Interval_167526 chr9 70248394 70250192 + 0 NA intron (ENSMUSG00000032220.10, intron 1 of 17) protein_coding-intron (ENSMUSG00000032220.10, intron 1 of 27) 41943 ENSMUSG00000032220.10 ENSMUSG00000032220 ENSMUST00000034745 Myo1e protein_coding Interval_156290 chr8 47015698 47016942 + 0 NA intron (ENSMUSG00000038173.15, intron 1 of 1) protein_coding-intron (ENSMUSG00000038173.15, intron 1 of 7) -2143 ENSMUSG00000109888.1 ENSMUSG00000109888 ENSMUST00000210828 Gm45600 antisense Interval_141418 chr6 128123921 128124174 + 0 NA intron (ENSMUSG00000030352.15, intron 1 of 6) protein_coding-intron (ENSMUSG00000030352.15, intron 1 of 8) -29021 ENSMUSG00000076327.1 ENSMUSG00000076327 ENSMUST00000102372 Gm26338 miRNA Interval_48057 chr13 95617893 95619611 + 0 NA promoter-TSS (ENSMUSG00000048376.6) protein_coding-promoter-TSS (ENSMUSG00000048376.6) -265 ENSMUSG00000048376.6 ENSMUSG00000048376 ENSMUST00000059193 F2r protein_coding Interval_142302 chr6 140535368 140536914 + 0 NA intron (ENSMUSG00000030231.11, intron 1 of 18) protein_coding-intron (ENSMUSG00000030231.11, intron 8 of 30) 5178 ENSMUSG00000084477.1 ENSMUSG00000084477 ENSMUST00000122528 Gm25780 misc_RNA Interval_122405 chr5 22143571 22144285 + 0 NA intron (ENSMUSG00000042453.14, intron 6 of 7) protein_coding-intron (ENSMUSG00000042453.14, intron 6 of 63) 137654 ENSMUSG00000089910.1 ENSMUSG00000089910 ENSMUST00000159629 Gm16113 processed_pseudogene Interval_56974 chr14 124445908 124447192 + 0 NA intron (ENSMUSG00000025551.13, intron 1 of 4) protein_coding-intron (ENSMUSG00000025551.13, intron 1 of 4) 47859 ENSMUSG00000115472.1 ENSMUSG00000115472 ENSMUST00000228023 Gm49070 processed_pseudogene Interval_136788 chr6 60312971 60314142 + 0 NA intron (ENSMUSG00000046764.8, intron 1 of 1) processed_transcript-intron (ENSMUSG00000046764.8, intron 1 of 1) 62764 ENSMUSG00000064515.1 ENSMUSG00000064515 ENSMUST00000082581 n-R5s162 rRNA Interval_170724 chr9 110348872 110350449 + 0 NA intron (ENSMUSG00000032485.14, intron 1 of 1) protein_coding-intron (ENSMUSG00000032485.14, intron 1 of 22) -11957 ENSMUSG00000032485.14 ENSMUSG00000032485 ENSMUST00000196424 Scap protein_coding Interval_104871 chr3 76829741 76830058 + 0 NA Intergenic Intergenic 7840 ENSMUSG00000103702.1 ENSMUSG00000103702 ENSMUST00000195775 Gm37290 processed_pseudogene Interval_39697 chr12 93191542 93191809 + 0 NA Intergenic Intergenic -193524 ENSMUSG00000113194.1 ENSMUSG00000113194 ENSMUST00000223384 Gm47998 processed_pseudogene Interval_173272 chrX 75779980 75780175 + 0 NA Intergenic Intergenic 56405 ENSMUSG00000081996.1 ENSMUSG00000081996 ENSMUST00000117092 Gm7153 processed_pseudogene Interval_105877 chr3 89870873 89871856 + 0 NA exon (ENSMUSG00000027947.11, exon 10 of 10) protein_coding-exon (ENSMUSG00000027947.11, exon 10 of 10) 33475 ENSMUSG00000046280.9 ENSMUSG00000046280 ENSMUST00000197454 She protein_coding Interval_119467 chr4 137762397 137763342 + 0 NA intron (ENSMUSG00000028766.10, intron 1 of 11) protein_coding-intron (ENSMUSG00000028766.10, intron 1 of 11) 19322 ENSMUSG00000028766.10 ENSMUSG00000028766 ENSMUST00000143757 Alpl protein_coding Interval_139118 chr6 95490257 95491333 + 0 NA intron (ENSMUSG00000061838.7, intron 10 of 10) protein_coding-intron (ENSMUSG00000061838.7, intron 10 of 10) -156818 ENSMUSG00000068180.13 ENSMUSG00000068180 ENSMUST00000171594 AY512915 lincRNA Interval_147419 chr7 66743282 66743719 + 0 NA promoter-TSS (ENSMUSG00000030510.11) protein_coding-promoter-TSS (ENSMUSG00000030510.11) 5696 ENSMUSG00000108846.1 ENSMUSG00000108846 ENSMUST00000209081 Gm10623 TEC Interval_127112 chr5 100365635 100366044 + 0 NA TTS (ENSMUSG00000035325.16) protein_coding-TTS (ENSMUSG00000035325.16) -10720 ENSMUSG00000085915.1 ENSMUSG00000085915 ENSMUST00000150506 Gm8091 unprocessed_pseudogene Interval_144866 chr7 28672750 28673260 + 0 NA intron (ENSMUSG00000108905.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000108905.1, intron 1 of 1) -20034 ENSMUSG00000037463.14 ENSMUSG00000037463 ENSMUST00000127368 Fbxo27 protein_coding Interval_125253 chr5 65680168 65680871 + 0 NA exon (ENSMUSG00000107050.1, exon 1 of 1) TEC-exon (ENSMUSG00000107050.1, exon 1 of 1) 1825 ENSMUSG00000107050.1 ENSMUSG00000107050 ENSMUST00000202959 C030017G13Rik TEC Interval_74825 chr17 56751144 56752688 + 0 NA intron (ENSMUSG00000039481.5, intron 2 of 2) protein_coding-intron (ENSMUSG00000039481.5, intron 2 of 2) 5614 ENSMUSG00000039481.5 ENSMUSG00000039481 ENSMUST00000044752 Nrtn protein_coding Interval_159136 chr8 90954826 90955807 + 0 NA promoter-TSS (ENSMUSG00000056608.14) protein_coding-promoter-TSS (ENSMUSG00000056608.14) -46900 ENSMUSG00000074171.2 ENSMUSG00000074171 ENSMUST00000098517 Gm6658 TEC Interval_136796 chr6 60441511 60441835 + 0 NA Intergenic Intergenic 20441 ENSMUSG00000107863.1 ENSMUSG00000107863 ENSMUST00000203795 Gm44389 processed_pseudogene Interval_112415 chr4 41123862 41124754 + 0 NA promoter-TSS (ENSMUSG00000028430.14) protein_coding-promoter-TSS (ENSMUSG00000028430.14) -1009 ENSMUSG00000028430.14 ENSMUSG00000028430 ENSMUST00000135059 Nol6 protein_coding Interval_41240 chr12 112073825 112074415 + 0 NA Intergenic Intergenic -32559 ENSMUSG00000037686.6 ENSMUSG00000037686 ENSMUST00000222970 Aspg protein_coding Interval_126213 chr5 82458861 82459293 + 0 NA Intergenic Intergenic 122226 ENSMUSG00000106926.1 ENSMUSG00000106926 ENSMUST00000200912 Rpl7-ps7 processed_pseudogene Interval_160776 chr8 112098421 112098661 + 0 NA Intergenic Intergenic 36036 ENSMUSG00000065700.1 ENSMUSG00000065700 ENSMUST00000083766 Gm22827 snRNA Interval_173883 chrX 106950717 106951729 + 0 NA Intergenic Intergenic 30598 ENSMUSG00000049929.7 ENSMUSG00000049929 ENSMUST00000060576 Lpar4 protein_coding Interval_70626 chr17 12495518 12495842 + 0 NA intron (ENSMUSG00000023828.3, intron 1 of 9) protein_coding-intron (ENSMUSG00000023828.3, intron 1 of 10) 11736 ENSMUSG00000023828.3 ENSMUSG00000023828 ENSMUST00000024595 Slc22a3 protein_coding Interval_128594 chr5 114210846 114211546 + 0 NA intron (ENSMUSG00000042010.16, intron 9 of 40) protein_coding-intron (ENSMUSG00000042010.16, intron 20 of 51) 26729 ENSMUSG00000084243.1 ENSMUSG00000084243 ENSMUST00000119639 Gm13784 processed_pseudogene Interval_172326 chrX 13039482 13039700 + 0 NA Intergenic Intergenic -2460 ENSMUSG00000087424.1 ENSMUSG00000087424 ENSMUST00000130099 5730405O15Rik processed_transcript Interval_144688 chr7 27537480 27538151 + 0 NA exon (ENSMUSG00000003363.15, exon 1 of 3) protein_coding-exon (ENSMUSG00000003363.15, exon 1 of 3) -5069 ENSMUSG00000003363.15 ENSMUSG00000003363 ENSMUST00000143903 Pld3 protein_coding Interval_37238 chr12 62365191 62365953 + 0 NA exon (ENSMUSG00000113071.1, exon 1 of 1) processed_pseudogene-exon (ENSMUSG00000113071.1, exon 1 of 1) 317 ENSMUSG00000113071.1 ENSMUSG00000113071 ENSMUST00000223234 Gm6353 processed_pseudogene Interval_78164 chr18 9576378 9576809 + 0 NA Intergenic Intergenic 29296 ENSMUSG00000117641.1 ENSMUSG00000117641 ENSMUST00000234100 Gm46641 processed_pseudogene Interval_82174 chr18 68324021 68324265 + 0 NA exon (ENSMUSG00000009535.13, exon 11 of 11) protein_coding-exon (ENSMUSG00000009535.13, exon 11 of 11) -13460 ENSMUSG00000007480.5 ENSMUSG00000007480 ENSMUST00000239469 Mc5r protein_coding Interval_164426 chr9 36941067 36941744 + 0 NA intron (ENSMUSG00000035934.16, intron 2 of 9) protein_coding-intron (ENSMUSG00000035934.16, intron 5 of 12) -74353 ENSMUSG00000093721.1 ENSMUSG00000093721 ENSMUST00000176020 Gm3896 antisense Interval_83420 chr18 85032902 85033189 + 0 NA Intergenic Intergenic -19710 ENSMUSG00000118255.1 ENSMUSG00000118255 ENSMUST00000238005 Gm50369 processed_pseudogene Interval_119074 chr4 135373443 135374097 + 0 NA intron (ENSMUSG00000043924.16, intron 3 of 3) protein_coding-intron (ENSMUSG00000043924.16, intron 2 of 3) -3388 ENSMUSG00000084032.1 ENSMUSG00000084032 ENSMUST00000120561 Gm12991 processed_pseudogene Interval_124639 chr5 52669243 52670022 + 0 NA promoter-TSS (ENSMUSG00000029173.12) protein_coding-promoter-TSS (ENSMUSG00000029173.12) -21152 ENSMUSG00000029173.12 ENSMUSG00000029173 ENSMUST00000123856 Sepsecs protein_coding Interval_78722 chr18 19079482 19079750 + 0 NA Intergenic Intergenic -53601 ENSMUSG00000117378.1 ENSMUSG00000117378 ENSMUST00000234128 Gm31086 lincRNA Interval_22417 chr11 9887914 9888159 + 0 NA Intergenic Intergenic -150415 ENSMUSG00000081629.1 ENSMUSG00000081629 ENSMUST00000117907 Eif3s6-ps1 processed_pseudogene Interval_136481 chr6 54848517 54850116 + 0 NA intron (ENSMUSG00000058446.14, intron 2 of 3) protein_coding-intron (ENSMUSG00000058446.14, intron 1 of 4) 32046 ENSMUSG00000058446.14 ENSMUSG00000058446 ENSMUST00000127331 Znrf2 protein_coding Interval_139109 chr6 95228803 95229051 + 0 NA Intergenic Intergenic 11651 ENSMUSG00000107934.1 ENSMUSG00000107934 ENSMUST00000204307 Gm17822 processed_pseudogene Interval_109517 chr3 143460401 143460718 + 0 NA Intergenic Intergenic 51158 ENSMUSG00000106210.1 ENSMUSG00000106210 ENSMUST00000199380 1700001N15Rik lincRNA Interval_564 chr1 7451744 7452213 + 0 NA Intergenic Intergenic 41299 ENSMUSG00000103498.1 ENSMUSG00000103498 ENSMUST00000193998 Gm18984 processed_pseudogene Interval_28463 chr11 76085821 76086471 + 0 NA intron (ENSMUSG00000017288.15, intron 13 of 18) protein_coding-intron (ENSMUSG00000017288.15, intron 13 of 21) -58112 ENSMUSG00000080701.1 ENSMUSG00000080701 ENSMUST00000121617 Gm12340 unprocessed_pseudogene Interval_79723 chr18 34726801 34727221 + 0 NA Intergenic Intergenic -6624 ENSMUSG00000024366.8 ENSMUSG00000024366 ENSMUST00000025224 Gfra3 protein_coding Interval_131813 chr5 140045529 140045728 + 0 NA intron (ENSMUSG00000029554.15, intron 6 of 6) protein_coding-intron (ENSMUSG00000029554.15, intron 17 of 17) -13452 ENSMUSG00000105453.1 ENSMUSG00000105453 ENSMUST00000198772 Gm43702 TEC Interval_118523 chr4 132260545 132262274 + 0 NA intron (ENSMUSG00000028901.13, intron 1 of 10) protein_coding-intron (ENSMUSG00000028901.13, intron 1 of 9) -4299 ENSMUSG00000100813.1 ENSMUSG00000100813 ENSMUST00000190917 Gm28874 lincRNA Interval_131415 chr5 137031192 137033194 + 0 NA TTS (ENSMUSG00000037428.14) protein_coding-TTS (ENSMUSG00000037428.14) 5457 ENSMUSG00000004849.14 ENSMUSG00000004849 ENSMUST00000129356 Ap1s1 protein_coding Interval_77500 chr17 90346280 90346883 + 0 NA intron (ENSMUSG00000024109.18, intron 2 of 2) protein_coding-intron (ENSMUSG00000024109.18, intron 16 of 20) 84029 ENSMUSG00000092706.1 ENSMUSG00000092706 ENSMUST00000174965 Gm24510 miRNA Interval_82170 chr18 68269190 68269521 + 0 NA TTS (ENSMUSG00000024544.9) protein_coding-TTS (ENSMUSG00000024544.9) -8382 ENSMUSG00000098253.1 ENSMUSG00000098253 ENSMUST00000184508 Mir7219 miRNA Interval_154905 chr8 24971312 24972178 + 0 NA intron (ENSMUSG00000031555.15, intron 15 of 21) protein_coding-intron (ENSMUSG00000031555.15, intron 15 of 22) -22964 ENSMUSG00000037437.18 ENSMUSG00000037437 ENSMUST00000133088 Adam32 protein_coding Interval_168824 chr9 87670682 87671149 + 0 NA Intergenic Intergenic -58370 ENSMUSG00000103710.1 ENSMUSG00000103710 ENSMUST00000192660 D030062O11Rik TEC Interval_147747 chr7 73333520 73333962 + 0 NA intron (ENSMUSG00000097756.2, intron 1 of 2) antisense-intron (ENSMUSG00000097756.2, intron 1 of 1) 23211 ENSMUSG00000108530.1 ENSMUSG00000108530 ENSMUST00000205600 4930429H19Rik lincRNA Interval_92106 chr2 53227330 53227514 + 0 NA Intergenic Intergenic 35696 ENSMUSG00000026960.6 ENSMUSG00000026960 ENSMUST00000028336 Arl6ip6 protein_coding Interval_22466 chr11 10598951 10599134 + 0 NA Intergenic Intergenic -221960 ENSMUSG00000084045.1 ENSMUSG00000084045 ENSMUST00000118697 Gm11997 processed_pseudogene Interval_66144 chr16 31932526 31934050 + 0 NA promoter-TSS (ENSMUSG00000045625.5) protein_coding-promoter-TSS (ENSMUSG00000045625.5) -359 ENSMUSG00000116534.1 ENSMUSG00000116534 ENSMUST00000231931 Gm49731 TEC Interval_14118 chr10 27679122 27679399 + 0 NA intron (ENSMUSG00000112610.1, intron 1 of 4) lincRNA-intron (ENSMUSG00000112610.1, intron 1 of 4) 19067 ENSMUSG00000112610.1 ENSMUSG00000112610 ENSMUST00000218769 Gm30165 lincRNA Interval_24306 chr11 32236947 32237248 + 0 NA exon (ENSMUSG00000020289.15, exon 2 of 2) protein_coding-exon (ENSMUSG00000020289.15, exon 2 of 2) 10567 ENSMUSG00000020287.15 ENSMUSG00000020287 ENSMUST00000138050 Mpg protein_coding Interval_81274 chr18 57284902 57285555 + 0 NA intron (ENSMUSG00000024593.15, intron 18 of 23) protein_coding-intron (ENSMUSG00000024593.15, intron 18 of 24) 29912 ENSMUSG00000118230.1 ENSMUSG00000118230 ENSMUST00000235284 Gm50200 processed_pseudogene Interval_164388 chr9 36686530 36687863 + 0 NA intron (ENSMUSG00000098304.2, intron 2 of 2) bidirectional_promoter_lncRNA-intron (ENSMUSG00000098304.2, intron 3 of 3) 5773 ENSMUSG00000111683.1 ENSMUSG00000111683 ENSMUST00000216487 Gm49367 processed_transcript Interval_38891 chr12 83643516 83645513 + 0 NA intron (ENSMUSG00000010608.15, intron 5 of 5) protein_coding-intron (ENSMUSG00000010608.15, intron 3 of 18) -10681 ENSMUSG00000099708.1 ENSMUSG00000099708 ENSMUST00000183323 Gm29361 antisense Interval_100660 chr2 170870710 170871878 + 0 NA intron (ENSMUSG00000027560.4, intron 7 of 7) protein_coding-intron (ENSMUSG00000027560.4, intron 7 of 7) 83530 ENSMUSG00000080955.1 ENSMUSG00000080955 ENSMUST00000117955 Gm14263 processed_pseudogene Interval_83027 chr18 80589861 80591197 + 0 NA intron (ENSMUSG00000118379.1, intron 2 of 3) lincRNA-intron (ENSMUSG00000118379.1, intron 2 of 3) 15282 ENSMUSG00000118379.1 ENSMUSG00000118379 ENSMUST00000237693 Gm41790 lincRNA Interval_149985 chr7 104217692 104219777 + 0 NA promoter-TSS (ENSMUSG00000072244.11) protein_coding-promoter-TSS (ENSMUSG00000072244.11) 4047 ENSMUSG00000109712.1 ENSMUSG00000109712 ENSMUST00000211112 Gm8667 processed_pseudogene Interval_105019 chr3 79828504 79828944 + 0 NA intron (ENSMUSG00000027956.11, intron 5 of 11) protein_coding-intron (ENSMUSG00000027956.11, intron 5 of 11) -6209 ENSMUSG00000077461.1 ENSMUSG00000077461 ENSMUST00000104273 Gm26420 snRNA Interval_3227 chr1 55011207 55011394 + 0 NA TTS (ENSMUSG00000025982.13) protein_coding-TTS (ENSMUSG00000025982.13) 16094 ENSMUSG00000025982.13 ENSMUSG00000025982 ENSMUST00000188419 Sf3b1 protein_coding Interval_45619 chr13 56289257 56290407 + 0 NA intron (ENSMUSG00000021508.11, intron 2 of 2) protein_coding-intron (ENSMUSG00000021508.11, intron 3 of 3) 6473 ENSMUSG00000021508.11 ENSMUSG00000021508 ENSMUST00000021970 Cxcl14 protein_coding Interval_1552 chr1 25510285 25510852 + 0 NA intron (ENSMUSG00000033569.17, intron 6 of 8) protein_coding-intron (ENSMUSG00000033569.17, intron 6 of 29) 59497 ENSMUSG00000084740.1 ENSMUSG00000084740 ENSMUST00000122791 Gm25294 snRNA Interval_2177 chr1 36874927 36875256 + 0 NA intron (ENSMUSG00000026116.11, intron 4 of 41) protein_coding-intron (ENSMUSG00000026116.11, intron 3 of 40) -3046 ENSMUSG00000103016.1 ENSMUSG00000103016 ENSMUST00000192008 Gm37506 TEC Interval_2798 chr1 45502079 45503443 + 0 NA intron (ENSMUSG00000026042.16, intron 1 of 15) protein_coding-intron (ENSMUSG00000026042.16, intron 1 of 53) -9709 ENSMUSG00000104476.1 ENSMUSG00000104476 ENSMUST00000192814 Gm38211 TEC Interval_47690 chr13 91352556 91352771 + 0 NA Intergenic Intergenic 21631 ENSMUSG00000099340.1 ENSMUSG00000099340 ENSMUST00000188207 Gm29540 sense_intronic Interval_120332 chr4 147940731 147941897 + 0 NA exon (ENSMUSG00000044496.6, exon 1 of 3) protein_coding-exon (ENSMUSG00000044496.6, exon 1 of 3) 419 ENSMUSG00000044496.6 ENSMUSG00000044496 ENSMUST00000103232 2510039O18Rik protein_coding Interval_67774 chr16 57104517 57105282 + 0 NA Intergenic Intergenic -33547 ENSMUSG00000046748.8 ENSMUSG00000046748 ENSMUST00000227043 Tmem45a2 protein_coding Interval_6177 chr1 99700975 99701282 + 0 NA Intergenic Intergenic -60887 ENSMUSG00000099453.1 ENSMUSG00000099453 ENSMUST00000191164 Gm18248 processed_pseudogene Interval_18022 chr10 81404210 81404605 + 0 NA intron (ENSMUSG00000055053.18, intron 8 of 9) protein_coding-intron (ENSMUSG00000055053.18, intron 8 of 9) -5168 ENSMUSG00000085327.1 ENSMUSG00000085327 ENSMUST00000156260 Gm16104 antisense Interval_129778 chr5 122291029 122291766 + 0 NA intron (ENSMUSG00000038582.15, intron 1 of 5) protein_coding-intron (ENSMUSG00000038582.15, intron 1 of 5) -4375 ENSMUSG00000038582.15 ENSMUSG00000038582 ENSMUST00000119015 Pptc7 protein_coding Interval_128801 chr5 115347527 115349408 + 0 NA promoter-TSS (ENSMUSG00000107288.1) lincRNA-promoter-TSS (ENSMUSG00000107288.1) 447 ENSMUSG00000041697.8 ENSMUSG00000041697 ENSMUST00000137766 Cox6a1 protein_coding Interval_47827 chr13 93580479 93581847 + 0 NA Intergenic Intergenic -44219 ENSMUSG00000085834.1 ENSMUSG00000085834 ENSMUST00000143025 Gm15622 antisense Interval_86356 chr19 38960577 38961699 + 0 NA intron (ENSMUSG00000025001.11, intron 19 of 21) protein_coding-intron (ENSMUSG00000025001.11, intron 19 of 21) -15509 ENSMUSG00000114610.1 ENSMUSG00000114610 ENSMUST00000225458 Cyp2c52-ps unprocessed_pseudogene Interval_80861 chr18 49550727 49551480 + 0 NA Intergenic Intergenic 27814 ENSMUSG00000100297.1 ENSMUSG00000100297 ENSMUST00000190201 1700044K03Rik lincRNA Interval_137558 chr6 73204032 73204334 + 0 NA intron (ENSMUSG00000052861.13, intron 3 of 75) protein_coding-intron (ENSMUSG00000052861.13, intron 4 of 76) 8480 ENSMUSG00000052861.13 ENSMUSG00000052861 ENSMUST00000114038 Dnah6 protein_coding Interval_90553 chr2 31119490 31119757 + 0 NA intron (ENSMUSG00000075415.13, intron 1 of 5) protein_coding-intron (ENSMUSG00000075415.13, intron 1 of 13) -3311 ENSMUSG00000075415.13 ENSMUSG00000075415 ENSMUST00000136085 Fnbp1 protein_coding Interval_37869 chr12 72708036 72708411 + 0 NA Intergenic Intergenic 33359 ENSMUSG00000112989.1 ENSMUSG00000112989 ENSMUST00000221318 Gm48143 processed_pseudogene Interval_130155 chr5 124569186 124570016 + 0 NA TTS (ENSMUSG00000029388.14) protein_coding-TTS (ENSMUSG00000029388.14) 9460 ENSMUSG00000029388.14 ENSMUSG00000029388 ENSMUST00000135163 Eif2b1 protein_coding Interval_113780 chr4 58551821 58552031 + 0 NA intron (ENSMUSG00000038668.14, intron 1 of 3) protein_coding-intron (ENSMUSG00000038668.14, intron 1 of 3) -3525 ENSMUSG00000038668.14 ENSMUSG00000038668 ENSMUST00000145361 Lpar1 protein_coding Interval_41191 chr12 111712572 111713721 + 0 NA promoter-TSS (ENSMUSG00000037787.14) protein_coding-promoter-TSS (ENSMUSG00000037787.14) -134 ENSMUSG00000037787.14 ENSMUSG00000037787 ENSMUST00000162316 Apopt1 protein_coding Interval_31983 chr11 104305266 104306744 + 0 NA intron (ENSMUSG00000018411.17, intron 5 of 5) protein_coding-intron (ENSMUSG00000018411.17, intron 6 of 11) -46644 ENSMUSG00000085134.1 ENSMUSG00000085134 ENSMUST00000137561 Gm11659 antisense Interval_171543 chr9 119107605 119108134 + 0 NA intron (ENSMUSG00000038060.15, intron 2 of 36) protein_coding-intron (ENSMUSG00000038060.15, intron 2 of 17) 5391 ENSMUSG00000038060.15 ENSMUSG00000038060 ENSMUST00000148611 Dlec1 protein_coding Interval_119032 chr4 135104763 135105711 + 0 NA Intergenic Intergenic 15210 ENSMUSG00000086884.1 ENSMUSG00000086884 ENSMUST00000146152 Gm16225 lincRNA Interval_111285 chr4 17171410 17172198 + 0 NA Intergenic Intergenic 84557 ENSMUSG00000083572.1 ENSMUSG00000083572 ENSMUST00000121293 Gm11849 processed_pseudogene Interval_137218 chr6 70157700 70158609 + 0 NA Intergenic Intergenic -10109 ENSMUSG00000096560.1 ENSMUSG00000096560 ENSMUST00000103905 Gm24096 miRNA Interval_155981 chr8 41416304 41417930 + 0 NA promoter-TSS (ENSMUSG00000031590.8) protein_coding-promoter-TSS (ENSMUSG00000031590.8) -4195 ENSMUSG00000031590.8 ENSMUSG00000031590 ENSMUST00000210873 Frg1 protein_coding Interval_22884 chr11 17090154 17090797 + 0 NA Intergenic Intergenic 5169 ENSMUSG00000082099.1 ENSMUSG00000082099 ENSMUST00000121971 Gm12013 processed_pseudogene Interval_95484 chr2 110011848 110012664 + 0 NA exon (ENSMUSG00000050199.13, exon 18 of 18) protein_coding-exon (ENSMUSG00000050199.13, exon 18 of 18) -28639 ENSMUSG00000027160.16 ENSMUSG00000027160 ENSMUST00000155110 Ccdc34 protein_coding Interval_164251 chr9 34485733 34486631 + 0 NA promoter-TSS (ENSMUSG00000032036.15) protein_coding-promoter-TSS (ENSMUSG00000032036.15) -2613 ENSMUSG00000032036.15 ENSMUSG00000032036 ENSMUST00000188658 Kirrel3 protein_coding Interval_139760 chr6 108448145 108449221 + 0 NA intron (ENSMUSG00000030102.11, intron 4 of 5) protein_coding-intron (ENSMUSG00000030102.11, intron 44 of 61) -7500 ENSMUSG00000098674.1 ENSMUSG00000098674 ENSMUST00000184343 Gm27813 misc_RNA Interval_95544 chr2 112116341 112116665 + 0 NA Intergenic Intergenic -3970 ENSMUSG00000109033.2 ENSMUSG00000109033 ENSMUST00000208654 Olfr1315-ps1 protein_coding Interval_60523 chr15 74628130 74628397 + 0 NA promoter-TSS (ENSMUSG00000022603.9) protein_coding-promoter-TSS (ENSMUSG00000022603.9) -20035 ENSMUSG00000022603.9 ENSMUSG00000022603 ENSMUST00000175931 Mroh4 protein_coding Interval_133818 chr6 12767900 12768626 + 0 NA Intergenic Intergenic -19010 ENSMUSG00000032625.14 ENSMUSG00000032625 ENSMUST00000119443 Thsd7a protein_coding Interval_45521 chr13 55634445 55635525 + 0 NA promoter-TSS (ENSMUSG00000021500.17) protein_coding-promoter-TSS (ENSMUSG00000021500.17) 11787 ENSMUSG00000021501.4 ENSMUSG00000021501 ENSMUST00000165154 Caml protein_coding Interval_75898 chr17 72866192 72866572 + 0 NA Intergenic Intergenic 28846 ENSMUSG00000039770.6 ENSMUSG00000039770 ENSMUST00000233662 Ypel5 protein_coding Interval_101229 chr2 179645995 179647205 + 0 NA intron (ENSMUSG00000000305.12, intron 2 of 2) protein_coding-intron (ENSMUSG00000000305.12, intron 2 of 15) -33033 ENSMUSG00000083410.1 ENSMUSG00000083410 ENSMUST00000120800 Gm14300 processed_pseudogene Interval_71976 chr17 27391693 27392177 + 0 NA Intergenic Intergenic -6212 ENSMUSG00000116970.1 ENSMUSG00000116970 ENSMUST00000232032 Gm49796 lincRNA Interval_88472 chr2 5412146 5412861 + 0 NA intron (ENSMUSG00000039145.16, intron 3 of 10) protein_coding-intron (ENSMUSG00000039145.16, intron 3 of 10) 128853 ENSMUSG00000080820.1 ENSMUSG00000080820 ENSMUST00000117204 Gm13197 processed_pseudogene Interval_30586 chr11 95263325 95264459 + 0 NA intron (ENSMUSG00000020872.4, intron 1 of 3) protein_coding-intron (ENSMUSG00000020872.4, intron 1 of 3) 2363 ENSMUSG00000020872.4 ENSMUSG00000020872 ENSMUST00000021242 Tac4 protein_coding Interval_167625 chr9 71288499 71288748 + 0 NA intron (ENSMUSG00000013584.5, intron 12 of 13) protein_coding-intron (ENSMUSG00000013584.5, intron 12 of 13) -9438 ENSMUSG00000111181.1 ENSMUSG00000111181 ENSMUST00000214975 Gm48124 processed_pseudogene Interval_5309 chr1 87441961 87442516 + 0 NA TTS (ENSMUSG00000048000.15) protein_coding-TTS (ENSMUSG00000048000.15) -26889 ENSMUSG00000089613.1 ENSMUSG00000089613 ENSMUST00000158988 Gm23504 snRNA Interval_21147 chr10 126895088 126896309 + 0 NA intron (ENSMUSG00000025436.12, intron 3 of 5) protein_coding-intron (ENSMUSG00000025436.12, intron 3 of 5) 2585 ENSMUSG00000112423.1 ENSMUSG00000112423 ENSMUST00000218775 Gm6333 processed_pseudogene Interval_65815 chr16 29226204 29226448 + 0 NA intron (ENSMUSG00000022525.13, intron 3 of 3) protein_coding-intron (ENSMUSG00000022525.13, intron 3 of 3) 16218 ENSMUSG00000022525.13 ENSMUSG00000022525 ENSMUST00000161294 Plaat1 protein_coding Interval_53791 chr14 61795575 61797348 + 0 NA Intergenic Intergenic 112951 ENSMUSG00000104187.1 ENSMUSG00000104187 ENSMUST00000194021 Gm37820 TEC Interval_140279 chr6 116007106 116008321 + 0 NA Intergenic Intergenic 50336 ENSMUSG00000030126.17 ENSMUSG00000030126 ENSMUST00000204574 Tmcc1 protein_coding Interval_63559 chr15 102034372 102035589 + 0 NA Intergenic Intergenic 6800 ENSMUSG00000023043.7 ENSMUSG00000023043 ENSMUST00000023803 Krt18 protein_coding Interval_128266 chr5 112176907 112177381 + 0 NA Intergenic Intergenic 20907 ENSMUSG00000104538.1 ENSMUSG00000104538 ENSMUST00000197688 1700016B01Rik lincRNA Interval_61291 chr15 80618510 80619654 + 0 NA intron (ENSMUSG00000042351.9, intron 1 of 7) protein_coding-intron (ENSMUSG00000042351.9, intron 1 of 7) -4440 ENSMUSG00000042351.9 ENSMUSG00000042351 ENSMUST00000230910 Grap2 protein_coding Interval_56367 chr14 118132145 118133079 + 0 NA intron (ENSMUSG00000022130.10, intron 1 of 11) protein_coding-intron (ENSMUSG00000022130.10, intron 1 of 11) 143 ENSMUSG00000022130.10 ENSMUSG00000022130 ENSMUST00000228085 Tgds protein_coding Interval_53975 chr14 64001616 64002067 + 0 NA intron (ENSMUSG00000046049.7, intron 1 of 3) protein_coding-intron (ENSMUSG00000046049.7, intron 1 of 3) -14338 ENSMUSG00000021961.6 ENSMUSG00000021961 ENSMUST00000225544 4930578I06Rik protein_coding Interval_734 chr1 10259345 10260258 + 0 NA Intergenic Intergenic -60999 ENSMUSG00000102556.1 ENSMUSG00000102556 ENSMUST00000192111 Gm37569 TEC Interval_3535 chr1 59426718 59427364 + 0 NA Intergenic Intergenic 22461 ENSMUSG00000104502.1 ENSMUSG00000104502 ENSMUST00000195013 Gm37737 TEC Interval_156064 chr8 43299717 43299955 + 0 NA intron (ENSMUSG00000051176.6, intron 4 of 4) protein_coding-intron (ENSMUSG00000051176.6, intron 3 of 3) 7100 ENSMUSG00000051176.6 ENSMUSG00000051176 ENSMUST00000082120 Zfp42 protein_coding Interval_22454 chr11 10364604 10364851 + 0 NA Intergenic Intergenic 12355 ENSMUSG00000084045.1 ENSMUSG00000084045 ENSMUST00000118697 Gm11997 processed_pseudogene Interval_23222 chr11 20647877 20648736 + 0 NA exon (ENSMUSG00000049800.13, exon 2 of 2) protein_coding-exon (ENSMUSG00000049800.13, exon 2 of 2) -73117 ENSMUSG00000083555.1 ENSMUSG00000083555 ENSMUST00000121890 Gm12035 processed_pseudogene Interval_166603 chr9 61265375 61265747 + 0 NA intron (ENSMUSG00000111658.1, intron 3 of 4) lincRNA-intron (ENSMUSG00000111658.1, intron 3 of 4) 28248 ENSMUSG00000111658.1 ENSMUSG00000111658 ENSMUST00000213377 B930092H01Rik lincRNA Interval_11146 chr1 179645352 179646105 + 0 NA Intergenic Intergenic -38117 ENSMUSG00000038936.13 ENSMUSG00000038936 ENSMUST00000192611 Sccpdh protein_coding Interval_102568 chr3 27896632 27896948 + 0 NA promoter-TSS (ENSMUSG00000043164.3) protein_coding-promoter-TSS (ENSMUSG00000043164.3) -422 ENSMUSG00000043164.3 ENSMUSG00000043164 ENSMUST00000058077 Tmem212 protein_coding Interval_121012 chr4 152209400 152210175 + 0 NA intron (ENSMUSG00000028937.14, intron 2 of 8) protein_coding-intron (ENSMUSG00000028937.14, intron 2 of 8) 5861 ENSMUSG00000085724.1 ENSMUSG00000085724 ENSMUST00000127752 Gm13096 sense_intronic Interval_19565 chr10 103336643 103337013 + 0 NA Intergenic Intergenic -56622 ENSMUSG00000019894.14 ENSMUSG00000019894 ENSMUST00000219936 Slc6a15 protein_coding Interval_111952 chr4 32780633 32781026 + 0 NA Intergenic Intergenic -19450 ENSMUSG00000045854.4 ENSMUSG00000045854 ENSMUST00000130321 Lyrm2 protein_coding Interval_24851 chr11 40410109 40410304 + 0 NA Intergenic Intergenic 13148 ENSMUSG00000082295.1 ENSMUSG00000082295 ENSMUST00000121775 Gm12133 processed_pseudogene Interval_153148 chr7 141652170 141652446 + 0 NA exon (ENSMUSG00000048191.15, exon 2 of 34) protein_coding-exon (ENSMUSG00000048191.15, exon 2 of 34) 3000 ENSMUSG00000048191.15 ENSMUSG00000048191 ENSMUST00000190907 Muc6 protein_coding Interval_87230 chr19 47081312 47081546 + 0 NA intron (ENSMUSG00000025049.6, intron 8 of 10) protein_coding-intron (ENSMUSG00000025049.6, intron 8 of 10) 9205 ENSMUSG00000071528.4 ENSMUSG00000071528 ENSMUST00000236170 Atp5md protein_coding Interval_2833 chr1 46089321 46089789 + 0 NA intron (ENSMUSG00000041144.12, intron 5 of 64) protein_coding-intron (ENSMUSG00000041144.12, intron 6 of 65) 22702 ENSMUSG00000041144.12 ENSMUSG00000041144 ENSMUST00000185879 Dnah7b protein_coding Interval_168643 chr9 84952388 84952734 + 0 NA Intergenic Intergenic 23954 ENSMUSG00000099779.1 ENSMUSG00000099779 ENSMUST00000189949 Gm8228 processed_pseudogene Interval_47326 chr13 81427065 81427648 + 0 NA intron (ENSMUSG00000069170.14, intron 9 of 27) protein_coding-intron (ENSMUSG00000069170.14, intron 71 of 89) -73446 ENSMUSG00000114454.1 ENSMUSG00000114454 ENSMUST00000224788 Gm48567 processed_pseudogene Interval_41437 chr12 113911926 113912985 + 0 NA promoter-TSS (ENSMUSG00000076653.4) IG_V_gene-promoter-TSS (ENSMUSG00000076653.4) 28 ENSMUSG00000076653.4 ENSMUSG00000076653 ENSMUST00000103462 Ighv7-2 IG_V_gene Interval_159808 chr8 103911550 103912259 + 0 NA Intergenic Intergenic -159245 ENSMUSG00000110019.1 ENSMUSG00000110019 ENSMUST00000211125 Gm8748 processed_pseudogene Interval_94483 chr2 91547347 91547596 + 0 NA intron (ENSMUSG00000040549.16, intron 1 of 10) protein_coding-intron (ENSMUSG00000040549.16, intron 1 of 42) -23587 ENSMUSG00000081834.1 ENSMUSG00000081834 ENSMUST00000117149 Gm13770 processed_pseudogene Interval_131457 chr5 137357896 137358622 + 0 NA intron (ENSMUSG00000029710.15, intron 5 of 17) protein_coding-intron (ENSMUSG00000029710.15, intron 4 of 16) 7829 ENSMUSG00000029710.15 ENSMUSG00000029710 ENSMUST00000111054 Ephb4 protein_coding Interval_134923 chr6 33674728 33675146 + 0 NA intron (ENSMUSG00000029763.17, intron 10 of 12) protein_coding-intron (ENSMUSG00000029763.17, intron 10 of 17) 17217 ENSMUSG00000107103.1 ENSMUSG00000107103 ENSMUST00000202529 Gm43164 TEC Interval_131132 chr5 135330930 135331122 + 0 NA intron (ENSMUSG00000040013.11, intron 7 of 7) protein_coding-intron (ENSMUSG00000040013.11, intron 8 of 8) 18988 ENSMUSG00000040013.11 ENSMUSG00000040013 ENSMUST00000201534 Fkbp6 protein_coding Interval_26379 chr11 57496294 57498390 + 0 NA intron (ENSMUSG00000020523.14, intron 9 of 13) protein_coding-intron (ENSMUSG00000020523.14, intron 9 of 13) 21260 ENSMUSG00000020523.14 ENSMUSG00000020523 ENSMUST00000130596 Fam114a2 protein_coding Interval_73916 chr17 45465240 45465448 + 0 NA promoter-TSS (ENSMUSG00000061242.6) processed_pseudogene-promoter-TSS (ENSMUSG00000061242.6) -444 ENSMUSG00000061242.6 ENSMUSG00000061242 ENSMUST00000095268 Gm9104 processed_pseudogene Interval_144940 chr7 29023099 29023368 + 0 NA exon (ENSMUSG00000030592.18, exon 9 of 9) protein_coding-exon (ENSMUSG00000030592.18, exon 9 of 9) -5790 ENSMUSG00000109017.1 ENSMUSG00000109017 ENSMUST00000207099 Gm38979 antisense Interval_87612 chr19 53726308 53728501 + 0 NA intron (ENSMUSG00000043639.15, intron 1 of 13) protein_coding-intron (ENSMUSG00000043639.15, intron 1 of 13) 40906 ENSMUSG00000089807.1 ENSMUSG00000089807 ENSMUST00000161107 Gm16298 processed_pseudogene Interval_134326 chr6 25174447 25174917 + 0 NA Intergenic Intergenic 25369 ENSMUSG00000089442.1 ENSMUSG00000089442 ENSMUST00000158817 Gm22529 snoRNA Interval_64108 chr16 8423798 8425818 + 0 NA exon (ENSMUSG00000022715.3, exon 1 of 4) protein_coding-exon (ENSMUSG00000022715.3, exon 1 of 4) 328 ENSMUSG00000022715.3 ENSMUSG00000022715 ENSMUST00000023400 Tmem114 protein_coding Interval_56778 chr14 122041673 122042588 + 0 NA Intergenic Intergenic 7456 ENSMUSG00000071229.3 ENSMUSG00000071229 ENSMUST00000045976 Timm8a2 protein_coding Interval_6928 chr1 120781527 120781786 + 0 NA Intergenic Intergenic 23213 ENSMUSG00000101386.1 ENSMUSG00000101386 ENSMUST00000188147 Gm29346 lincRNA Interval_92808 chr2 65784029 65785182 + 0 NA Intergenic Intergenic -22408 ENSMUSG00000118566.1 ENSMUSG00000118566 ENSMUST00000238931 BX284648.1 unprocessed_pseudogene Interval_6278 chr1 105188407 105188951 + 0 NA Intergenic Intergenic -55746 ENSMUSG00000099702.1 ENSMUSG00000099702 ENSMUST00000187431 Gm29013 unprocessed_pseudogene Interval_169739 chr9 100821871 100822175 + 0 NA intron (ENSMUSG00000037286.15, intron 9 of 12) protein_coding-intron (ENSMUSG00000037286.15, intron 9 of 32) -55068 ENSMUSG00000103624.1 ENSMUSG00000103624 ENSMUST00000193413 Gm3081 TEC Interval_79863 chr18 35626501 35627776 + 0 NA promoter-TSS (ENSMUSG00000024354.13) protein_coding-promoter-TSS (ENSMUSG00000024354.13) 58 ENSMUSG00000024354.13 ENSMUSG00000024354 ENSMUST00000236196 Slc23a1 protein_coding Interval_129429 chr5 120116206 120117455 + 0 NA intron (ENSMUSG00000029594.12, intron 1 of 23) protein_coding-intron (ENSMUSG00000029594.12, intron 1 of 23) 22433 ENSMUSG00000097368.2 ENSMUSG00000097368 ENSMUST00000181905 Gm10390 antisense Interval_56754 chr14 121865314 121865652 + 0 NA Intergenic Intergenic 13021 ENSMUSG00000102112.1 ENSMUSG00000102112 ENSMUST00000185880 1810041H14Rik antisense Interval_57407 chr15 10621037 10621423 + 0 NA intron (ENSMUSG00000022246.14, intron 3 of 16) protein_coding-intron (ENSMUSG00000022246.14, intron 3 of 17) 20893 ENSMUSG00000115667.1 ENSMUSG00000115667 ENSMUST00000228059 Gm10389 antisense Interval_128338 chr5 112625455 112626053 + 0 NA Intergenic Intergenic -14581 ENSMUSG00000105735.1 ENSMUSG00000105735 ENSMUST00000195895 4933415J04Rik TEC Interval_137405 chr6 71953704 71953935 + 0 NA intron (ENSMUSG00000049553.11, intron 19 of 19) protein_coding-intron (ENSMUSG00000049553.11, intron 19 of 33) 5458 ENSMUSG00000049553.11 ENSMUSG00000049553 ENSMUST00000205517 Polr1a protein_coding Interval_116604 chr4 116003707 116004700 + 0 NA intron (ENSMUSG00000034171.13, intron 6 of 11) protein_coding-intron (ENSMUSG00000034171.13, intron 7 of 14) -4266 ENSMUSG00000034171.13 ENSMUSG00000034171 ENSMUST00000150614 Faah protein_coding Interval_128279 chr5 112246975 112248161 + 0 NA intron (ENSMUSG00000066975.12, intron 5 of 5) protein_coding-intron (ENSMUSG00000066975.12, intron 4 of 4) 4950 ENSMUSG00000066975.12 ENSMUSG00000066975 ENSMUST00000086629 Cryba4 protein_coding Interval_153625 chr8 4013064 4013747 + 0 NA Intergenic Intergenic 3477 ENSMUSG00000109267.1 ENSMUSG00000109267 ENSMUST00000207058 Gm45048 processed_pseudogene Interval_66953 chr16 38783559 38784394 + 0 NA intron (ENSMUSG00000049436.5, intron 5 of 7) protein_coding-intron (ENSMUSG00000049436.5, intron 5 of 7) -3633 ENSMUSG00000049436.5 ENSMUSG00000049436 ENSMUST00000232536 Upk1b protein_coding Interval_33706 chr11 118005451 118005676 + 0 NA exon (ENSMUSG00000017715.11, exon 7 of 10) protein_coding-exon (ENSMUSG00000017715.11, exon 7 of 10) 3293 ENSMUSG00000098958.1 ENSMUSG00000098958 ENSMUST00000184982 Mir6933 miRNA Interval_43270 chr13 28417430 28418429 + 0 NA TTS (ENSMUSG00000113216.1) lincRNA-TTS (ENSMUSG00000113216.1) 1934 ENSMUSG00000113216.1 ENSMUSG00000113216 ENSMUST00000221933 Gm40841 lincRNA Interval_20190 chr10 115561410 115562258 + 0 NA intron (ENSMUSG00000020140.15, intron 1 of 16) protein_coding-intron (ENSMUSG00000020140.15, intron 1 of 17) -8152 ENSMUSG00000092210.1 ENSMUSG00000092210 ENSMUST00000173620 A930009A15Rik protein_coding Interval_152953 chr7 140028150 140028345 + 0 NA intron (ENSMUSG00000025474.9, intron 4 of 16) protein_coding-intron (ENSMUSG00000025474.9, intron 5 of 17) -8158 ENSMUSG00000025470.11 ENSMUSG00000025470 ENSMUST00000210936 Zfp511 protein_coding Interval_20638 chr10 119823838 119824677 + 0 NA TTS (ENSMUSG00000085418.1) antisense-TTS (ENSMUSG00000085418.1) 28020 ENSMUSG00000085418.1 ENSMUSG00000085418 ENSMUST00000135940 Grip1os1 antisense Interval_54206 chr14 66241547 66241868 + 0 NA intron (ENSMUSG00000059456.13, intron 1 of 14) protein_coding-intron (ENSMUSG00000059456.13, intron 1 of 30) -28155 ENSMUSG00000059456.13 ENSMUSG00000059456 ENSMUST00000127083 Ptk2b protein_coding Interval_158021 chr8 78097212 78099194 + 0 NA Intergenic Intergenic -9757 ENSMUSG00000109948.1 ENSMUSG00000109948 ENSMUST00000210236 Gm45288 processed_pseudogene Interval_134995 chr6 34398763 34400963 + 0 NA Intergenic Intergenic 10264 ENSMUSG00000061758.13 ENSMUSG00000061758 ENSMUST00000144072 Akr1b10 protein_coding Interval_77424 chr17 88609114 88609921 + 0 NA promoter-TSS (ENSMUSG00000117398.1) processed_pseudogene-promoter-TSS (ENSMUSG00000117398.1) -973 ENSMUSG00000117398.1 ENSMUSG00000117398 ENSMUST00000234525 Gm9406 processed_pseudogene Interval_5939 chr1 93357599 93357787 + 0 NA intron (ENSMUSG00000026275.13, intron 7 of 9) protein_coding-intron (ENSMUSG00000026275.13, intron 7 of 9) 5535 ENSMUSG00000098689.1 ENSMUSG00000098689 ENSMUST00000184286 Mir6345 miRNA Interval_19890 chr10 110950710 110951892 + 0 NA intron (ENSMUSG00000035798.14, intron 10 of 16) protein_coding-intron (ENSMUSG00000035798.14, intron 10 of 16) 31111 ENSMUSG00000020186.7 ENSMUSG00000020186 ENSMUST00000220301 Csrp2 protein_coding Interval_114520 chr4 82065904 82066104 + 0 NA promoter-TSS (ENSMUSG00000087110.1) lincRNA-promoter-TSS (ENSMUSG00000087110.1) 47 ENSMUSG00000085022.2 ENSMUSG00000085022 ENSMUST00000161588 Gm5860 lincRNA Interval_116940 chr4 118331654 118331952 + 0 NA Intergenic Intergenic -28187 ENSMUSG00000006395.16 ENSMUSG00000006395 ENSMUST00000132882 Hyi polymorphic_pseudogene Interval_103693 chr3 51670589 51671024 + 0 NA promoter-TSS (ENSMUSG00000074604.9) protein_coding-promoter-TSS (ENSMUSG00000074604.9) -1995 ENSMUSG00000103527.1 ENSMUSG00000103527 ENSMUST00000194360 Gm37261 TEC Interval_166999 chr9 64402063 64402301 + 0 NA intron (ENSMUSG00000036466.17, intron 1 of 24) protein_coding-intron (ENSMUSG00000036466.17, intron 1 of 24) 16556 ENSMUSG00000036466.17 ENSMUSG00000036466 ENSMUST00000153934 Megf11 protein_coding Interval_2402 chr1 39010494 39011174 + 0 NA Intergenic Intergenic 18156 ENSMUSG00000103046.1 ENSMUSG00000103046 ENSMUST00000194994 Gm37309 TEC Interval_44250 chr13 42951919 42952256 + 0 NA intron (ENSMUSG00000054728.17, intron 1 of 4) protein_coding-intron (ENSMUSG00000054728.17, intron 1 of 11) 35436 ENSMUSG00000054728.17 ENSMUSG00000054728 ENSMUST00000161201 Phactr1 protein_coding Interval_168057 chr9 75691353 75692190 + 0 NA Intergenic Intergenic 2888 ENSMUSG00000098232.1 ENSMUSG00000098232 ENSMUST00000182463 Gm3671 processed_pseudogene Interval_165303 chr9 46137963 46138433 + 0 NA intron (ENSMUSG00000034135.15, intron 3 of 24) protein_coding-intron (ENSMUSG00000034135.15, intron 3 of 22) 15068 ENSMUSG00000034135.15 ENSMUSG00000034135 ENSMUST00000138338 Sik3 protein_coding Interval_57371 chr15 10125574 10125978 + 0 NA Intergenic Intergenic 73950 ENSMUSG00000088156.1 ENSMUSG00000088156 ENSMUST00000157531 Gm26350 misc_RNA Interval_29090 chr11 80249069 80249294 + 0 NA promoter-TSS (ENSMUSG00000017686.17) protein_coding-promoter-TSS (ENSMUSG00000017686.17) -5520 ENSMUSG00000017686.17 ENSMUSG00000017686 ENSMUST00000236882 Rhot1 protein_coding Interval_46668 chr13 68556909 68557242 + 0 NA Intergenic Intergenic 25029 ENSMUSG00000034617.7 ENSMUSG00000034617 ENSMUST00000221800 Mtrr protein_coding Interval_79364 chr18 31221167 31222196 + 0 NA intron (ENSMUSG00000057455.12, intron 2 of 4) protein_coding-intron (ENSMUSG00000057455.12, intron 2 of 3) -8949 ENSMUSG00000057455.12 ENSMUSG00000057455 ENSMUST00000139924 Rit2 protein_coding Interval_145397 chr7 34465251 34465726 + 0 NA intron (ENSMUSG00000085124.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000085124.1, intron 1 of 2) 27351 ENSMUSG00000085124.1 ENSMUSG00000085124 ENSMUST00000140298 Gm12766 lincRNA Interval_165723 chr9 51831264 51831494 + 0 NA promoter-TSS (ENSMUSG00000053199.13) protein_coding-promoter-TSS (ENSMUSG00000053199.13) -393 ENSMUSG00000053199.13 ENSMUSG00000053199 ENSMUST00000149754 Arhgap20 protein_coding Interval_74413 chr17 50031272 50031972 + 0 NA intron (ENSMUSG00000039316.14, intron 5 of 7) protein_coding-intron (ENSMUSG00000039316.14, intron 7 of 9) 58795 ENSMUSG00000118535.1 ENSMUSG00000118535 ENSMUST00000239097 AC133946.1 unitary_pseudogene Interval_42398 chr13 12676585 12677674 + 0 NA Intergenic Intergenic -1172 ENSMUSG00000113021.1 ENSMUSG00000113021 ENSMUST00000222654 Gm48440 processed_pseudogene Interval_141220 chr6 125726597 125726892 + 0 NA intron (ENSMUSG00000038115.16, intron 2 of 25) protein_coding-intron (ENSMUSG00000038115.16, intron 3 of 15) -12662 ENSMUSG00000089834.2 ENSMUSG00000089834 ENSMUST00000161498 Gm16303 processed_pseudogene Interval_125955 chr5 76194304 76195419 + 0 NA intron (ENSMUSG00000029234.13, intron 1 of 5) protein_coding-intron (ENSMUSG00000029234.13, intron 1 of 5) -1764 ENSMUSG00000083152.1 ENSMUSG00000083152 ENSMUST00000119356 Apc-ps1 transcribed_processed_pseudogene Interval_69458 chr16 93662333 93662611 + 0 NA Intergenic Intergenic -5338 ENSMUSG00000118512.1 ENSMUSG00000118512 ENSMUST00000239088 AC160993.1 processed_pseudogene Interval_144460 chr7 25290055 25291337 + 0 NA promoter-TSS (ENSMUSG00000005442.13) protein_coding-promoter-TSS (ENSMUSG00000005442.13) -512 ENSMUSG00000005442.13 ENSMUSG00000005442 ENSMUST00000163901 Cic protein_coding Interval_39 GL456211.1 217116 217901 + 0 NA NA NA NA NA Interval_39791 chr12 98347499 98348215 + 0 NA Intergenic Intergenic -68196 ENSMUSG00000112510.1 ENSMUSG00000112510 ENSMUST00000218404 Gm47566 antisense Interval_74920 chr17 57305269 57306239 + 0 NA TTS (ENSMUSG00000034116.17) protein_coding-TTS (ENSMUSG00000034116.17) 2690 ENSMUSG00000034116.17 ENSMUSG00000034116 ENSMUST00000008847 Vav1 protein_coding Interval_120830 chr4 150895169 150895632 + 0 NA Intergenic Intergenic 14428 ENSMUSG00000028964.14 ENSMUSG00000028964 ENSMUST00000146184 Park7 protein_coding Interval_101708 chr3 9064465 9065345 + 0 NA intron (ENSMUSG00000103116.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000103116.1, intron 1 of 2) 2941 ENSMUSG00000103116.1 ENSMUSG00000103116 ENSMUST00000194792 4930539M17Rik lincRNA Interval_14754 chr10 39601974 39602393 + 0 NA intron (ENSMUSG00000086915.7, intron 1 of 2) antisense-intron (ENSMUSG00000086915.7, intron 1 of 2) 11499 ENSMUSG00000086915.7 ENSMUSG00000086915 ENSMUST00000143877 Gm16364 antisense Interval_5736 chr1 91344785 91345803 + 0 NA exon (ENSMUSG00000049515.12, exon 9 of 9) protein_coding-exon (ENSMUSG00000049515.12, exon 9 of 9) -5722 ENSMUSG00000026308.8 ENSMUSG00000026308 ENSMUST00000027533 Klhl30 protein_coding Interval_8168 chr1 136220190 136221285 + 0 NA intron (ENSMUSG00000041605.16, intron 6 of 6) protein_coding-intron (ENSMUSG00000041605.16, intron 6 of 9) 4663 ENSMUSG00000097315.1 ENSMUSG00000097315 ENSMUST00000180496 Gm26568 antisense Interval_117097 chr4 119505770 119506025 + 0 NA Intergenic Intergenic -3351 ENSMUSG00000082009.1 ENSMUSG00000082009 ENSMUST00000118610 Gm12954 processed_pseudogene Interval_172738 chrX 48124625 48125183 + 0 NA intron (ENSMUSG00000037005.16, intron 12 of 20) protein_coding-intron (ENSMUSG00000037005.16, intron 12 of 20) -2840 ENSMUSG00000037005.16 ENSMUSG00000037005 ENSMUST00000156654 Xpnpep2 protein_coding Interval_44948 chr13 50480969 50481609 + 0 NA intron (ENSMUSG00000101136.1, intron 1 of 1) antisense-intron (ENSMUSG00000101136.1, intron 1 of 1) 10452 ENSMUSG00000101136.1 ENSMUSG00000101136 ENSMUST00000185962 Gm8739 antisense Interval_50457 chr14 13635440 13635873 + 0 NA Intergenic Intergenic -35220 ENSMUSG00000044772.2 ENSMUSG00000044772 ENSMUST00000061045 Sntn protein_coding Interval_134426 chr6 28572938 28573737 + 0 NA intron (ENSMUSG00000001424.14, intron 1 of 4) protein_coding-intron (ENSMUSG00000001424.14, intron 10 of 23) 5265 ENSMUSG00000103132.1 ENSMUSG00000103132 ENSMUST00000194736 Gm37978 TEC Interval_152555 chr7 134379932 134380155 + 0 NA intron (ENSMUSG00000030994.16, intron 1 of 3) protein_coding-intron (ENSMUSG00000030994.16, intron 1 of 3) 118941 ENSMUSG00000030994.16 ENSMUSG00000030994 ENSMUST00000205334 D7Ertd443e protein_coding Interval_44667 chr13 47017418 47017889 + 0 NA Intergenic Intergenic -2803 ENSMUSG00000044231.3 ENSMUSG00000044231 ENSMUST00000052747 Nhlrc1 protein_coding Interval_90892 chr2 33292406 33292710 + 0 NA intron (ENSMUSG00000038831.16, intron 3 of 16) protein_coding-intron (ENSMUSG00000038831.16, intron 3 of 16) -30613 ENSMUSG00000082844.1 ENSMUSG00000082844 ENSMUST00000120467 Gm13537 processed_pseudogene Interval_105938 chr3 90185253 90186183 + 0 NA intron (ENSMUSG00000027939.11, intron 28 of 39) protein_coding-intron (ENSMUSG00000027939.11, intron 28 of 39) -12964 ENSMUSG00000084527.1 ENSMUSG00000084527 ENSMUST00000122578 Gm24185 snRNA Interval_1494 chr1 24136646 24137851 + 0 NA Intergenic Intergenic 11973 ENSMUSG00000097670.1 ENSMUSG00000097670 ENSMUST00000180661 Gm26607 processed_pseudogene Interval_12591 chr10 3720604 3721489 + 0 NA Intergenic Intergenic -113833 ENSMUSG00000040624.18 ENSMUSG00000040624 ENSMUST00000141367 Plekhg1 protein_coding Interval_127995 chr5 110142518 110143212 + 0 NA intron (ENSMUSG00000014668.15, intron 2 of 2) protein_coding-intron (ENSMUSG00000014668.15, intron 3 of 17) 7023 ENSMUSG00000014668.15 ENSMUSG00000014668 ENSMUST00000197005 Chfr protein_coding Interval_37609 chr12 70291235 70291464 + 0 NA TTS (ENSMUSG00000021071.17) protein_coding-TTS (ENSMUSG00000021071.17) -34222 ENSMUSG00000021071.17 ENSMUSG00000021071 ENSMUST00000220557 Trim9 protein_coding Interval_9872 chr1 163623900 163624645 + 0 NA exon (ENSMUSG00000102117.1, exon 1 of 1) processed_pseudogene-exon (ENSMUSG00000102117.1, exon 1 of 1) 479 ENSMUSG00000102117.1 ENSMUSG00000102117 ENSMUST00000191040 Rpsa-ps1 processed_pseudogene Interval_70823 chr17 15113954 15114444 + 0 NA Intergenic Intergenic -37960 ENSMUSG00000116655.1 ENSMUSG00000116655 ENSMUST00000231330 Gm35455 lincRNA Interval_151547 chr7 123443206 123443507 + 0 NA Intergenic Intergenic 15496 ENSMUSG00000030763.7 ENSMUSG00000030763 ENSMUST00000206727 Lcmt1 protein_coding Interval_13012 chr10 9237406 9237914 + 0 NA Intergenic Intergenic -12909 ENSMUSG00000112543.1 ENSMUSG00000112543 ENSMUST00000218588 Gm48744 TEC Interval_167831 chr9 72934921 72935759 + 0 NA intron (ENSMUSG00000034910.5, intron 1 of 2) protein_coding-intron (ENSMUSG00000034910.5, intron 1 of 2) 9695 ENSMUSG00000034910.5 ENSMUSG00000034910 ENSMUST00000038489 Pygo1 protein_coding Interval_152849 chr7 138812381 138812575 + 0 NA Intergenic Intergenic -8267 ENSMUSG00000110241.1 ENSMUSG00000110241 ENSMUST00000211620 Gm45506 processed_pseudogene Interval_166457 chr9 59649656 59649851 + 0 NA TTS (ENSMUSG00000025237.16) protein_coding-TTS (ENSMUSG00000025237.16) 1556 ENSMUSG00000025237.16 ENSMUSG00000025237 ENSMUST00000217284 Parp6 protein_coding Interval_911 chr1 13116644 13116925 + 0 NA intron (ENSMUSG00000042414.7, intron 6 of 7) protein_coding-intron (ENSMUSG00000042414.7, intron 6 of 7) 10379 ENSMUSG00000042414.7 ENSMUSG00000042414 ENSMUST00000047577 Prdm14 protein_coding Interval_45200 chr13 53159643 53161148 + 0 NA intron (ENSMUSG00000021464.14, intron 1 of 8) protein_coding-intron (ENSMUSG00000021464.14, intron 1 of 8) 115263 ENSMUSG00000021464.14 ENSMUSG00000021464 ENSMUST00000149299 Ror2 protein_coding Interval_96164 chr2 120185783 120186299 + 0 NA intron (ENSMUSG00000050211.14, intron 4 of 16) protein_coding-intron (ENSMUSG00000050211.14, intron 7 of 19) -48481 ENSMUSG00000027293.13 ENSMUSG00000027293 ENSMUST00000148073 Ehd4 protein_coding Interval_4963 chr1 83000020 83001722 + 0 NA exon (ENSMUSG00000113097.1, exon 1 of 1) protein_coding-exon (ENSMUSG00000113097.1, exon 1 of 1) 323 ENSMUSG00000113097.1 ENSMUSG00000113097 ENSMUST00000223439 Gm47959 protein_coding Interval_143361 chr7 6126833 6127485 + 0 NA Intergenic Intergenic -9271 ENSMUSG00000108923.1 ENSMUSG00000108923 ENSMUST00000208973 4933431C10Rik TEC Interval_127870 chr5 108424896 108425221 + 0 NA intron (ENSMUSG00000029491.7, intron 10 of 17) protein_coding-intron (ENSMUSG00000029491.7, intron 11 of 21) 9339 ENSMUSG00000050856.16 ENSMUSG00000050856 ENSMUST00000123184 Atp5k protein_coding Interval_87925 chr19 57146836 57147668 + 0 NA intron (ENSMUSG00000025085.16, intron 4 of 20) protein_coding-intron (ENSMUSG00000025085.16, intron 4 of 25) -126708 ENSMUSG00000117684.1 ENSMUSG00000117684 ENSMUST00000237596 4930449E18Rik antisense Interval_100195 chr2 167570123 167570711 + 0 NA intron (ENSMUSG00000085596.1, intron 2 of 3) processed_transcript-intron (ENSMUSG00000085596.1, intron 2 of 3) 17103 ENSMUSG00000085596.1 ENSMUSG00000085596 ENSMUST00000127006 Gm11476 processed_transcript Interval_66372 chr16 33454425 33454736 + 0 NA intron (ENSMUSG00000022811.17, intron 4 of 7) protein_coding-intron (ENSMUSG00000022811.17, intron 4 of 8) 73717 ENSMUSG00000022811.17 ENSMUSG00000022811 ENSMUST00000089677 Zfp148 protein_coding Interval_45561 chr13 55868695 55869068 + 0 NA intron (ENSMUSG00000114493.2, intron 2 of 5) antisense-intron (ENSMUSG00000114493.2, intron 2 of 5) -32689 ENSMUSG00000021506.7 ENSMUSG00000021506 ENSMUST00000173618 Pitx1 protein_coding Interval_131102 chr5 135120923 135122035 + 0 NA TTS (ENSMUSG00000107296.1) antisense-TTS (ENSMUSG00000107296.1) 1814 ENSMUSG00000107296.1 ENSMUSG00000107296 ENSMUST00000201067 Gm43500 antisense Interval_142195 chr6 138139438 138141229 + 0 NA promoter-TSS (ENSMUSG00000008540.11) protein_coding-promoter-TSS (ENSMUSG00000008540.11) -221 ENSMUSG00000008540.11 ENSMUSG00000008540 ENSMUST00000125810 Mgst1 protein_coding Interval_11517 chr1 182380889 182381788 + 0 NA Intergenic Intergenic 12197 ENSMUSG00000097260.1 ENSMUSG00000097260 ENSMUST00000181525 Gm5706 processed_pseudogene Interval_64078 chr16 7352158 7352814 + 0 NA promoter-TSS (ENSMUSG00000008658.16) protein_coding-promoter-TSS (ENSMUSG00000008658.16) 158739 ENSMUSG00000008658.16 ENSMUSG00000008658 ENSMUST00000231031 Rbfox1 protein_coding Interval_66145 chr16 31935324 31935589 + 0 NA TTS (ENSMUSG00000116534.1) TEC-TTS (ENSMUSG00000116534.1) 1513 ENSMUSG00000045625.5 ENSMUSG00000045625 ENSMUST00000134666 Pigz protein_coding Interval_68135 chr16 65571725 65572918 + 0 NA Intergenic Intergenic -9801 ENSMUSG00000004843.7 ENSMUSG00000004843 ENSMUST00000004965 Chmp2b protein_coding Interval_154376 chr8 15116177 15116711 + 0 NA intron (ENSMUSG00000031461.4, intron 25 of 36) protein_coding-intron (ENSMUSG00000031461.4, intron 25 of 36) -2563 ENSMUSG00000031461.4 ENSMUSG00000031461 ENSMUST00000140033 Myom2 protein_coding Interval_62522 chr15 94206089 94206371 + 0 NA Intergenic Intergenic 198028 ENSMUSG00000022449.14 ENSMUSG00000022449 ENSMUST00000128797 Adamts20 protein_coding Interval_82631 chr18 75525993 75526246 + 0 NA intron (ENSMUSG00000052928.9, intron 7 of 11) protein_coding-intron (ENSMUSG00000052928.9, intron 7 of 11) 11474 ENSMUSG00000097712.1 ENSMUSG00000097712 ENSMUST00000181913 Gm10532 antisense Interval_19578 chr10 103709908 103710756 + 0 NA Intergenic Intergenic -127939 ENSMUSG00000098173.1 ENSMUSG00000098173 ENSMUST00000182615 Gm26923 processed_pseudogene Interval_166659 chr9 61655256 61655915 + 0 NA Intergenic Intergenic -107499 ENSMUSG00000111739.1 ENSMUSG00000111739 ENSMUST00000213572 Gm47241 processed_pseudogene Interval_42888 chr13 21157769 21159542 + 0 NA Intergenic Intergenic -12788 ENSMUSG00000045474.7 ENSMUSG00000045474 ENSMUST00000055298 Olfr1368 protein_coding Interval_153137 chr7 141588670 141589402 + 0 NA intron (ENSMUSG00000002957.11, intron 2 of 4) protein_coding-intron (ENSMUSG00000002957.11, intron 2 of 21) 24711 ENSMUSG00000097170.1 ENSMUSG00000097170 ENSMUST00000181275 Gm16982 antisense Interval_36231 chr12 40022084 40022573 + 0 NA intron (ENSMUSG00000047446.18, intron 2 of 7) protein_coding-intron (ENSMUSG00000047446.18, intron 2 of 4) 15101 ENSMUSG00000047446.18 ENSMUSG00000047446 ENSMUST00000101472 Arl4a protein_coding Interval_98944 chr2 156242923 156243626 + 0 NA intron (ENSMUSG00000038116.16, intron 1 of 1) protein_coding-intron (ENSMUSG00000038116.16, intron 2 of 17) 20394 ENSMUSG00000038116.16 ENSMUSG00000038116 ENSMUST00000122814 Phf20 protein_coding Interval_97855 chr2 144464613 144465033 + 0 NA promoter-TSS (ENSMUSG00000083674.3) transcribed_unitary_pseudogene-promoter-TSS (ENSMUSG00000083674.3) 428 ENSMUSG00000083674.3 ENSMUSG00000083674 ENSMUST00000137929 Zfp133-ps transcribed_unitary_pseudogene Interval_50779 chr14 19803042 19803928 + 0 NA intron (ENSMUSG00000021806.4, intron 15 of 16) protein_coding-intron (ENSMUSG00000021806.4, intron 15 of 20) 19570 ENSMUSG00000021807.6 ENSMUSG00000021807 ENSMUST00000225615 Rtraf protein_coding Interval_14968 chr10 41542230 41542602 + 0 NA intron (ENSMUSG00000075225.15, intron 18 of 20) protein_coding-intron (ENSMUSG00000075225.15, intron 9 of 10) -11346 ENSMUSG00000090708.1 ENSMUSG00000090708 ENSMUST00000164074 Gm17196 antisense Interval_48316 chr13 98076331 98076940 + 0 NA intron (ENSMUSG00000021662.11, intron 3 of 34) protein_coding-intron (ENSMUSG00000021662.11, intron 3 of 35) -60218 ENSMUSG00000021662.11 ENSMUSG00000021662 ENSMUST00000224866 Arhgef28 protein_coding Interval_40833 chr12 108744819 108745588 + 0 NA Intergenic Intergenic -7577 ENSMUSG00000114102.1 ENSMUSG00000114102 ENSMUST00000222878 Gm48048 processed_pseudogene Interval_95598 chr2 112625305 112625907 + 0 NA intron (ENSMUSG00000003604.14, intron 2 of 3) protein_coding-intron (ENSMUSG00000003604.14, intron 3 of 5) 11576 ENSMUSG00000105420.1 ENSMUSG00000105420 ENSMUST00000199821 Gm44374 miRNA Interval_22526 chr11 11491590 11492449 + 0 NA intron (ENSMUSG00000020191.11, intron 2 of 5) protein_coding-intron (ENSMUSG00000020191.11, intron 5 of 8) -29611 ENSMUSG00000020193.3 ENSMUSG00000020193 ENSMUST00000020413 Zpbp protein_coding Interval_34654 chr12 8382496 8383129 + 0 NA Intergenic Intergenic -11397 ENSMUSG00000112452.1 ENSMUSG00000112452 ENSMUST00000218567 Gm48075 lincRNA Interval_129372 chr5 119596644 119597148 + 0 NA exon (ENSMUSG00000106991.1, exon 1 of 1) TEC-exon (ENSMUSG00000106991.1, exon 1 of 1) 1308 ENSMUSG00000106991.1 ENSMUSG00000106991 ENSMUST00000202546 Gm43399 TEC Interval_78466 chr18 13051552 13051795 + 0 NA Intergenic Intergenic 44636 ENSMUSG00000037346.5 ENSMUSG00000037346 ENSMUST00000234565 Hrh4 protein_coding Interval_131048 chr5 134751232 134751840 + 0 NA intron (ENSMUSG00000107318.1, intron 1 of 4) antisense-intron (ENSMUSG00000107318.1, intron 1 of 4) 4494 ENSMUSG00000107318.1 ENSMUSG00000107318 ENSMUST00000200700 Gm30003 antisense Interval_71318 chr17 22185552 22185994 + 0 NA exon (ENSMUSG00000117252.1, exon 1 of 1) processed_pseudogene-exon (ENSMUSG00000117252.1, exon 1 of 1) 335 ENSMUSG00000117252.1 ENSMUSG00000117252 ENSMUST00000233487 Gm9514 processed_pseudogene Interval_75861 chr17 72027414 72027620 + 0 NA intron (ENSMUSG00000055471.7, intron 5 of 28) protein_coding-intron (ENSMUSG00000055471.7, intron 5 of 28) -100487 ENSMUSG00000117126.1 ENSMUSG00000117126 ENSMUST00000233690 Gm49924 TEC Interval_115076 chr4 89294121 89295802 + 0 NA promoter-TSS (ENSMUSG00000044303.6) protein_coding-promoter-TSS (ENSMUSG00000044303.6) -308 ENSMUSG00000044303.6 ENSMUSG00000044303 ENSMUST00000107131 Cdkn2a protein_coding Interval_109739 chr3 146462734 146463697 + 0 NA exon (ENSMUSG00000028188.13, exon 14 of 15) protein_coding-exon (ENSMUSG00000028188.13, exon 14 of 15) 6524 ENSMUSG00000028188.13 ENSMUSG00000028188 ENSMUST00000093951 Spata1 protein_coding Interval_87411 chr19 49262129 49262355 + 0 NA Intergenic Intergenic 171569 ENSMUSG00000118111.1 ENSMUSG00000118111 ENSMUST00000236912 Gm50442 lincRNA Interval_164462 chr9 37217281 37218356 + 0 NA intron (ENSMUSG00000032121.9, intron 1 of 3) protein_coding-intron (ENSMUSG00000032121.9, intron 1 of 3) 9595 ENSMUSG00000032121.9 ENSMUSG00000032121 ENSMUST00000034632 Tmem218 protein_coding Interval_87656 chr19 54034922 54035201 + 0 NA Intergenic Intergenic -10199 ENSMUSG00000033717.6 ENSMUSG00000033717 ENSMUST00000237285 Adra2a protein_coding Interval_59407 chr15 52500142 52500344 + 0 NA TTS (ENSMUSG00000094481.1) snoRNA-TTS (ENSMUSG00000094481.1) 587 ENSMUSG00000094481.1 ENSMUSG00000094481 ENSMUST00000178490 Gm23267 snoRNA Interval_30923 chr11 97240694 97240971 + 0 NA intron (ENSMUSG00000001441.13, intron 9 of 21) protein_coding-intron (ENSMUSG00000001441.13, intron 9 of 22) -39296 ENSMUSG00000086680.2 ENSMUSG00000086680 ENSMUST00000133160 Gm11592 antisense Interval_47260 chr13 79925985 79926170 + 0 NA intron (ENSMUSG00000100168.2, intron 2 of 2) lincRNA-intron (ENSMUSG00000100168.2, intron 2 of 2) 47615 ENSMUSG00000114222.1 ENSMUSG00000114222 ENSMUST00000226041 Gm19320 processed_pseudogene Interval_173518 chrX 98084871 98085149 + 0 NA Intergenic Intergenic 44635 ENSMUSG00000083972.1 ENSMUSG00000083972 ENSMUST00000121944 Gm14802 processed_pseudogene Interval_140094 chr6 114087746 114087978 + 0 NA Intergenic Intergenic 25666 ENSMUSG00000107474.1 ENSMUSG00000107474 ENSMUST00000204499 Gm43932 processed_pseudogene Interval_118234 chr4 129689140 129690417 + 0 NA intron (ENSMUSG00000053730.15, intron 6 of 9) protein_coding-intron (ENSMUSG00000053730.15, intron 5 of 8) -5207 ENSMUSG00000098422.1 ENSMUSG00000098422 ENSMUST00000184308 Mir7016 miRNA Interval_17389 chr10 76274972 76275696 + 0 NA intron (ENSMUSG00000020231.15, intron 27 of 36) protein_coding-intron (ENSMUSG00000020231.15, intron 28 of 37) -17831 ENSMUSG00000089711.1 ENSMUSG00000089711 ENSMUST00000161924 Gm16240 antisense Interval_35377 chr12 21159581 21160392 + 0 NA intron (ENSMUSG00000052632.16, intron 1 of 27) protein_coding-intron (ENSMUSG00000052632.16, intron 1 of 26) 87337 ENSMUSG00000118655.1 ENSMUSG00000118655 ENSMUST00000172962 AC156032.1 processed_transcript Interval_56277 chr14 115967450 115967685 + 0 NA intron (ENSMUSG00000022112.14, intron 7 of 7) protein_coding-intron (ENSMUSG00000022112.14, intron 7 of 7) -96289 ENSMUSG00000093497.1 ENSMUSG00000093497 ENSMUST00000176344 Gm20713 processed_transcript Interval_131056 chr5 134804249 134805269 + 0 NA intron (ENSMUSG00000107318.1, intron 3 of 4) antisense-intron (ENSMUSG00000107318.1, intron 3 of 4) 57717 ENSMUSG00000107318.1 ENSMUSG00000107318 ENSMUST00000200700 Gm30003 antisense Interval_110546 chr4 3813777 3814423 + 0 NA TTS (ENSMUSG00000042228.14) protein_coding-TTS (ENSMUSG00000042228.14) -5349 ENSMUSG00000055216.3 ENSMUSG00000055216 ENSMUST00000068663 9430025C20Rik pseudogene Interval_96291 chr2 121333967 121335041 + 0 NA promoter-TSS (ENSMUSG00000033526.16) protein_coding-promoter-TSS (ENSMUSG00000033526.16) 2655 ENSMUSG00000033526.16 ENSMUSG00000033526 ENSMUST00000134796 Ppip5k1 protein_coding Interval_17809 chr10 80204046 80204265 + 0 NA Intergenic Intergenic 24673 ENSMUSG00000003070.6 ENSMUSG00000003070 ENSMUST00000003154 Efna2 protein_coding Interval_131936 chr5 140900856 140902124 + 0 NA intron (ENSMUSG00000036526.8, intron 6 of 24) protein_coding-intron (ENSMUSG00000036526.8, intron 6 of 24) -71333 ENSMUSG00000000149.10 ENSMUSG00000000149 ENSMUST00000198447 Gna12 protein_coding Interval_94136 chr2 84618888 84619261 + 0 NA intron (ENSMUSG00000034101.14, intron 1 of 13) protein_coding-intron (ENSMUSG00000034101.14, intron 6 of 18) -9377 ENSMUSG00000034101.14 ENSMUSG00000034101 ENSMUST00000149317 Ctnnd1 protein_coding Interval_149586 chr7 99851155 99851420 + 0 NA intron (ENSMUSG00000035227.7, intron 1 of 5) protein_coding-intron (ENSMUSG00000035227.7, intron 1 of 4) 7624 ENSMUSG00000035227.7 ENSMUSG00000035227 ENSMUST00000208562 Spcs2 protein_coding Interval_120730 chr4 150309240 150310843 + 0 NA intron (ENSMUSG00000039852.17, intron 1 of 22) protein_coding-intron (ENSMUSG00000039852.17, intron 1 of 22) 5395 ENSMUSG00000085787.3 ENSMUSG00000085787 ENSMUST00000136346 Gm13092 processed_pseudogene Interval_102241 chr3 19833791 19834467 + 0 NA Intergenic Intergenic -60757 ENSMUSG00000048106.6 ENSMUSG00000048106 ENSMUST00000059704 4632415L05Rik transcribed_unprocessed_pseudogene Interval_92097 chr2 53173930 53174179 + 0 NA exon (ENSMUSG00000061136.16, exon 5 of 5) protein_coding-exon (ENSMUSG00000061136.16, exon 5 of 5) 17133 ENSMUSG00000061136.16 ENSMUSG00000061136 ENSMUST00000132031 Prpf40a protein_coding Interval_96840 chr2 128805053 128805594 + 0 NA Intergenic Intergenic -13061 ENSMUSG00000014353.15 ENSMUSG00000014353 ENSMUST00000143686 Tmem87b protein_coding Interval_102755 chr3 30822072 30822351 + 0 NA TTS (ENSMUSG00000027706.8) protein_coding-TTS (ENSMUSG00000027706.8) 3360 ENSMUSG00000027706.8 ENSMUSG00000027706 ENSMUST00000195072 Sec62 protein_coding Interval_83127 chr18 81797003 81797572 + 0 NA intron (ENSMUSG00000118254.1, intron 2 of 5) lincRNA-intron (ENSMUSG00000118254.1, intron 2 of 5) 25228 ENSMUSG00000118254.1 ENSMUSG00000118254 ENSMUST00000236148 Gm46614 lincRNA Interval_161998 chr8 124335650 124335907 + 0 NA intron (ENSMUSG00000092329.1, intron 11 of 15) protein_coding-intron (ENSMUSG00000089704.9, intron 11 of 15) -3983 ENSMUSG00000089820.1 ENSMUSG00000089820 ENSMUST00000159796 Gm15775 antisense Interval_156465 chr8 48456292 48457094 + 0 NA intron (ENSMUSG00000031561.16, intron 2 of 26) protein_coding-intron (ENSMUSG00000031561.16, intron 2 of 28) 98620 ENSMUSG00000031561.16 ENSMUSG00000031561 ENSMUST00000211812 Tenm3 protein_coding Interval_15757 chr10 56144278 56145365 + 0 NA intron (ENSMUSG00000038122.9, intron 20 of 29) protein_coding-intron (ENSMUSG00000038122.9, intron 20 of 32) 29906 ENSMUSG00000047669.8 ENSMUSG00000047669 ENSMUST00000217668 Msl3l2 protein_coding Interval_94265 chr2 87201607 87201795 + 0 NA promoter-TSS (ENSMUSG00000081168.1) processed_pseudogene-promoter-TSS (ENSMUSG00000081168.1) -306 ENSMUSG00000081168.1 ENSMUSG00000081168 ENSMUST00000121036 Gm13730 processed_pseudogene Interval_66918 chr16 38521808 38523400 + 0 NA promoter-TSS (ENSMUSG00000002846.9) protein_coding-promoter-TSS (ENSMUSG00000002846.9) 37 ENSMUSG00000002846.9 ENSMUSG00000002846 ENSMUST00000147543 Timmdc1 protein_coding Interval_25974 chr11 53268708 53269654 + 0 NA intron (ENSMUSG00000020361.13, intron 12 of 15) protein_coding-intron (ENSMUSG00000020361.13, intron 12 of 18) 31230 ENSMUSG00000020361.13 ENSMUSG00000020361 ENSMUST00000151854 Hspa4 protein_coding Interval_20826 chr10 121334523 121334819 + 0 NA intron (ENSMUSG00000052302.6, intron 2 of 5) protein_coding-intron (ENSMUSG00000052302.6, intron 2 of 5) -8505 ENSMUSG00000111940.1 ENSMUSG00000111940 ENSMUST00000218322 Gm4478 processed_pseudogene Interval_98657 chr2 153901351 153901576 + 0 NA intron (ENSMUSG00000068009.11, intron 1 of 8) protein_coding-intron (ENSMUSG00000068009.11, intron 1 of 16) 1068 ENSMUSG00000068009.11 ENSMUSG00000068009 ENSMUST00000135501 Bpifb6 protein_coding Interval_75714 chr17 70827873 70830521 + 0 NA Intergenic Intergenic -5467 ENSMUSG00000093622.1 ENSMUSG00000093622 ENSMUST00000175668 Gm20703 lincRNA Interval_163611 chr9 22518413 22518963 + 0 NA intron (ENSMUSG00000035919.16, intron 2 of 5) protein_coding-intron (ENSMUSG00000035919.16, intron 5 of 21) 6231 ENSMUSG00000035919.16 ENSMUSG00000035919 ENSMUST00000124076 Bbs9 protein_coding Interval_143300 chr7 5019825 5020987 + 0 NA promoter-TSS (ENSMUSG00000074405.8) protein_coding-promoter-TSS (ENSMUSG00000074405.8) -147 ENSMUSG00000035228.15 ENSMUSG00000035228 ENSMUST00000045543 Ccdc106 protein_coding Interval_100637 chr2 170651638 170651902 + 0 NA TTS (ENSMUSG00000085158.1) lincRNA-TTS (ENSMUSG00000085158.1) 10695 ENSMUSG00000085158.1 ENSMUSG00000085158 ENSMUST00000147141 Gm14264 lincRNA Interval_83139 chr18 81995506 81995939 + 0 NA promoter-TSS (ENSMUSG00000118278.1) TEC-promoter-TSS (ENSMUSG00000118278.1) -112 ENSMUSG00000118278.1 ENSMUSG00000118278 ENSMUST00000236169 Gm50293 TEC Interval_152883 chr7 139449383 139449780 + 0 NA intron (ENSMUSG00000025477.14, intron 1 of 15) protein_coding-intron (ENSMUSG00000025477.14, intron 1 of 15) -67078 ENSMUSG00000025477.14 ENSMUSG00000025477 ENSMUST00000152475 Inpp5a protein_coding Interval_65710 chr16 25809559 25810042 + 0 NA intron (ENSMUSG00000022510.14, intron 1 of 11) protein_coding-intron (ENSMUSG00000022510.14, intron 1 of 11) 83104 ENSMUSG00000098103.1 ENSMUSG00000098103 ENSMUST00000182783 Gm27005 processed_pseudogene Interval_77367 chr17 88270827 88271189 + 0 NA intron (ENSMUSG00000117351.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000117351.1, intron 1 of 1) 34370 ENSMUSG00000117497.1 ENSMUSG00000117497 ENSMUST00000234925 1700116H05Rik lincRNA Interval_22676 chr11 12867679 12868737 + 0 NA Intergenic Intergenic 69730 ENSMUSG00000083859.1 ENSMUSG00000083859 ENSMUST00000118518 Gm12003 processed_pseudogene Interval_92557 chr2 60639797 60641197 + 0 NA intron (ENSMUSG00000026971.15, intron 8 of 14) protein_coding-intron (ENSMUSG00000026971.15, intron 10 of 17) 33229 ENSMUSG00000026971.15 ENSMUSG00000026971 ENSMUST00000142696 Itgb6 protein_coding Interval_111922 chr4 32570719 32570977 + 0 NA intron (ENSMUSG00000086150.1, intron 1 of 1) protein_coding-intron (ENSMUSG00000040270.16, intron 6 of 7) 860 ENSMUSG00000086150.1 ENSMUSG00000086150 ENSMUST00000149084 Bach2os antisense Interval_43035 chr13 23395748 23397357 + 0 NA Intergenic Intergenic 14047 ENSMUSG00000083667.1 ENSMUSG00000083667 ENSMUST00000121969 Gm11334 processed_pseudogene Interval_134780 chr6 31487273 31488200 + 0 NA intron (ENSMUSG00000025609.15, intron 9 of 9) protein_coding-intron (ENSMUSG00000025609.15, intron 12 of 17) 36575 ENSMUSG00000025608.9 ENSMUSG00000025608 ENSMUST00000136877 Podxl protein_coding Interval_113094 chr4 48101578 48101935 + 0 NA Intergenic Intergenic -23167 ENSMUSG00000061455.13 ENSMUSG00000061455 ENSMUST00000064765 Stx17 protein_coding Interval_68310 chr16 72987117 72987451 + 0 NA intron (ENSMUSG00000022883.11, intron 3 of 6) protein_coding-intron (ENSMUSG00000022883.11, intron 16 of 28) 10935 ENSMUSG00000022883.11 ENSMUSG00000022883 ENSMUST00000232432 Robo1 protein_coding Interval_120997 chr4 152130554 152132206 + 0 NA promoter-TSS (ENSMUSG00000028943.18) protein_coding-promoter-TSS (ENSMUSG00000028943.18) 13409 ENSMUSG00000024793.14 ENSMUSG00000024793 ENSMUST00000153619 Tnfrsf25 protein_coding Interval_79467 chr18 32120157 32120386 + 0 NA exon (ENSMUSG00000117650.1, exon 1 of 2) lincRNA-exon (ENSMUSG00000117650.1, exon 1 of 2) -1488 ENSMUSG00000117650.1 ENSMUSG00000117650 ENSMUST00000234068 4933435E02Rik lincRNA Interval_68302 chr16 72785662 72785902 + 0 NA intron (ENSMUSG00000022883.11, intron 2 of 28) protein_coding-intron (ENSMUSG00000022883.11, intron 2 of 28) -190567 ENSMUSG00000022883.11 ENSMUSG00000022883 ENSMUST00000232432 Robo1 protein_coding Interval_155886 chr8 40640269 40640856 + 0 NA Intergenic Intergenic -5765 ENSMUSG00000039431.16 ENSMUSG00000039431 ENSMUST00000174537 Mtmr7 protein_coding Interval_165298 chr9 46112079 46112324 + 0 NA intron (ENSMUSG00000034135.15, intron 1 of 24) protein_coding-intron (ENSMUSG00000034135.15, intron 1 of 22) -10929 ENSMUSG00000034135.15 ENSMUSG00000034135 ENSMUST00000138338 Sik3 protein_coding Interval_76728 chr17 83719111 83719563 + 0 NA intron (ENSMUSG00000055817.18, intron 2 of 16) protein_coding-intron (ENSMUSG00000055817.18, intron 3 of 16) -9827 ENSMUSG00000055817.18 ENSMUSG00000055817 ENSMUST00000175920 Mta3 protein_coding Interval_75100 chr17 63413919 63415140 + 0 NA intron (ENSMUSG00000023965.13, intron 1 of 6) protein_coding-intron (ENSMUSG00000023965.13, intron 4 of 8) 37182 ENSMUSG00000023965.13 ENSMUSG00000023965 ENSMUST00000090318 Fbxl17 protein_coding Interval_159428 chr8 94567266 94567497 + 0 NA intron (ENSMUSG00000034361.10, intron 14 of 15) protein_coding-intron (ENSMUSG00000034361.10, intron 14 of 15) 11867 ENSMUSG00000034361.10 ENSMUSG00000034361 ENSMUST00000156377 Cpne2 protein_coding Interval_71179 chr17 20944678 20946316 + 0 NA promoter-TSS (ENSMUSG00000007564.15) protein_coding-promoter-TSS (ENSMUSG00000007564.15) -348 ENSMUSG00000116974.1 ENSMUSG00000116974 ENSMUST00000232004 Gm49761 lincRNA Interval_144997 chr7 29332081 29332768 + 0 NA intron (ENSMUSG00000030583.16, intron 7 of 13) protein_coding-intron (ENSMUSG00000030583.16, intron 17 of 22) -13022 ENSMUSG00000109351.1 ENSMUSG00000109351 ENSMUST00000207245 Gm44632 antisense Interval_129970 chr5 123375256 123376702 + 0 NA TTS (ENSMUSG00000029438.9) protein_coding-TTS (ENSMUSG00000029438.9) 8980 ENSMUSG00000104830.1 ENSMUSG00000104830 ENSMUST00000200118 5830487J09Rik processed_transcript Interval_76884 chr17 84725382 84725845 + 0 NA intron (ENSMUSG00000024120.12, intron 3 of 6) protein_coding-intron (ENSMUSG00000024120.12, intron 29 of 37) 5571 ENSMUSG00000024120.12 ENSMUSG00000024120 ENSMUST00000159222 Lrpprc protein_coding Interval_97263 chr2 132715432 132716688 + 0 NA intron (ENSMUSG00000044991.10, intron 1 of 1) protein_coding-intron (ENSMUSG00000044991.10, intron 2 of 2) -1046 ENSMUSG00000064413.1 ENSMUSG00000064413 ENSMUST00000082479 Gm22245 snRNA Interval_78898 chr18 21299619 21300884 + 0 NA promoter-TSS (ENSMUSG00000042680.8) protein_coding-promoter-TSS (ENSMUSG00000042680.8) -128 ENSMUSG00000042680.8 ENSMUSG00000042680 ENSMUST00000234115 Garem1 protein_coding Interval_48858 chr13 104094684 104096075 + 0 NA intron (ENSMUSG00000021710.11, intron 1 of 11) protein_coding-intron (ENSMUSG00000021710.11, intron 1 of 12) -14394 ENSMUSG00000042743.13 ENSMUSG00000042743 ENSMUST00000159574 Sgtb protein_coding Interval_84729 chr19 15984364 15985340 + 0 NA promoter-TSS (ENSMUSG00000097557.2) bidirectional_promoter_lncRNA-promoter-TSS (ENSMUSG00000097557.2) -159 ENSMUSG00000041491.8 ENSMUSG00000041491 ENSMUST00000236749 Cep78 protein_coding Interval_95840 chr2 117176736 117177250 + 0 NA intron (ENSMUSG00000027351.14, intron 6 of 6) protein_coding-intron (ENSMUSG00000027351.14, intron 6 of 6) -8134 ENSMUSG00000076376.1 ENSMUSG00000076376 ENSMUST00000102421 Mir674 miRNA Interval_90006 chr2 27271143 27271437 + 0 NA intron (ENSMUSG00000009621.18, intron 24 of 29) protein_coding-intron (ENSMUSG00000009621.18, intron 23 of 27) -55414 ENSMUSG00000086669.1 ENSMUSG00000086669 ENSMUST00000156020 AA645442 antisense Interval_23189 chr11 20445351 20446727 + 0 NA promoter-TSS (ENSMUSG00000083878.3) processed_pseudogene-promoter-TSS (ENSMUSG00000083878.3) -373 ENSMUSG00000083878.3 ENSMUSG00000083878 ENSMUST00000119032 Gm12034 processed_pseudogene Interval_152494 chr7 133490823 133491065 + 0 NA Intergenic Intergenic 111214 ENSMUSG00000030976.3 ENSMUSG00000030976 ENSMUST00000033275 Tex36 protein_coding Interval_132138 chr5 142911432 142912363 + 0 NA Intergenic Intergenic -8243 ENSMUSG00000029580.14 ENSMUSG00000029580 ENSMUST00000164765 Actb protein_coding Interval_158164 chr8 79386538 79386773 + 0 NA intron (ENSMUSG00000031681.16, intron 1 of 5) protein_coding-intron (ENSMUSG00000031681.16, intron 1 of 3) -17493 ENSMUSG00000109945.1 ENSMUSG00000109945 ENSMUST00000211483 Gm45601 lincRNA Interval_92767 chr2 65260905 65261675 + 0 NA Intergenic Intergenic -16127 ENSMUSG00000083707.1 ENSMUSG00000083707 ENSMUST00000118148 Gm13592 processed_pseudogene Interval_107448 chr3 107775240 107775561 + 0 NA Intergenic Intergenic -6456 ENSMUSG00000106531.1 ENSMUSG00000106531 ENSMUST00000200491 Gm43233 processed_pseudogene Interval_83348 chr18 84489616 84489841 + 0 NA intron (ENSMUSG00000048410.17, intron 3 of 8) protein_coding-intron (ENSMUSG00000048410.17, intron 2 of 2) -54793 ENSMUSG00000048410.17 ENSMUSG00000048410 ENSMUST00000182297 Zfp407 protein_coding Interval_54913 chr14 76185440 76186563 + 0 NA Intergenic Intergenic 51544 ENSMUSG00000095427.2 ENSMUSG00000095427 ENSMUST00000095471 Rps2-ps6 processed_pseudogene Interval_166341 chr9 58448075 58450126 + 0 NA Intergenic Intergenic -6022 ENSMUSG00000097651.2 ENSMUSG00000097651 ENSMUST00000181967 4930461G14Rik lincRNA Interval_136136 chr6 51421978 51422610 + 0 NA Intergenic Intergenic -10455 ENSMUSG00000029832.16 ENSMUSG00000029832 ENSMUST00000160133 Nfe2l3 protein_coding Interval_121066 chr4 152546483 152546970 + 0 NA intron (ENSMUSG00000039577.17, intron 17 of 29) protein_coding-intron (ENSMUSG00000039577.17, intron 16 of 28) 68548 ENSMUSG00000039577.17 ENSMUSG00000039577 ENSMUST00000123635 Nphp4 protein_coding Interval_81758 chr18 64466407 64466982 + 0 NA intron (ENSMUSG00000024588.9, intron 2 of 6) protein_coding-intron (ENSMUSG00000024588.9, intron 5 of 9) -17005 ENSMUSG00000060096.5 ENSMUSG00000060096 ENSMUST00000072796 Amd-ps3 processed_pseudogene Interval_81916 chr18 65822864 65824014 + 0 NA Intergenic Intergenic -12106 ENSMUSG00000117751.1 ENSMUSG00000117751 ENSMUST00000237019 Gm50256 TEC Interval_41896 chr13 3994904 3995454 + 0 NA Intergenic Intergenic -27990 ENSMUSG00000113667.1 ENSMUSG00000113667 ENSMUST00000221030 Gm47853 processed_pseudogene Interval_28728 chr11 77953461 77954660 + 0 NA exon (ENSMUSG00000000632.13, exon 2 of 16) protein_coding-exon (ENSMUSG00000000632.13, exon 2 of 16) 23021 ENSMUSG00000000632.13 ENSMUSG00000000632 ENSMUST00000126866 Sez6 protein_coding Interval_110326 chr3 156945905 156946143 + 0 NA intron (ENSMUSG00000040037.13, intron 2 of 2) protein_coding-intron (ENSMUSG00000040037.13, intron 2 of 6) -25244 ENSMUSG00000086708.1 ENSMUSG00000086708 ENSMUST00000144350 Gm15577 antisense Interval_87997 chr19 57664817 57665270 + 0 NA intron (ENSMUSG00000054843.9, intron 9 of 28) protein_coding-intron (ENSMUSG00000054843.9, intron 9 of 28) 54009 ENSMUSG00000054843.9 ENSMUSG00000054843 ENSMUST00000077282 Atrnl1 protein_coding Interval_150970 chr7 117016014 117017014 + 0 NA Intergenic Intergenic -63819 ENSMUSG00000064971.1 ENSMUSG00000064971 ENSMUST00000083037 Gm26054 snRNA Interval_137134 chr6 67906279 67906582 + 0 NA Intergenic Intergenic -7143 ENSMUSG00000095737.5 ENSMUSG00000095737 ENSMUST00000103311 Igkv11-125 IG_V_gene Interval_102563 chr3 27795678 27796298 + 0 NA Intergenic Intergenic -72125 ENSMUSG00000088772.1 ENSMUSG00000088772 ENSMUST00000158147 Gm26040 snoRNA Interval_97918 chr2 145701384 145701692 + 0 NA exon (ENSMUSG00000081722.1, exon 1 of 1) processed_pseudogene-exon (ENSMUSG00000081722.1, exon 1 of 1) 187 ENSMUSG00000081722.1 ENSMUSG00000081722 ENSMUST00000119964 Gm11763 processed_pseudogene Interval_37593 chr12 70135047 70135240 + 0 NA Intergenic Intergenic -19014 ENSMUSG00000090121.10 ENSMUSG00000090121 ENSMUST00000161541 Abhd12b protein_coding Interval_95366 chr2 106960030 106960685 + 0 NA Intergenic Intergenic 8920 ENSMUSG00000027122.15 ENSMUSG00000027122 ENSMUST00000124598 Arl14ep protein_coding Interval_97795 chr2 144133425 144135337 + 0 NA intron (ENSMUSG00000074758.10, intron 1 of 2) lincRNA-intron (ENSMUSG00000074758.10, intron 2 of 3) 8992 ENSMUSG00000082480.1 ENSMUSG00000082480 ENSMUST00000118911 Gm11687 processed_pseudogene Interval_128083 chr5 110782603 110783426 + 0 NA Intergenic Intergenic -2399 ENSMUSG00000029507.16 ENSMUSG00000029507 ENSMUST00000149208 Pus1 protein_coding Interval_15997 chr10 59997594 59997819 + 0 NA exon (ENSMUSG00000020107.10, exon 1 of 1) protein_coding-exon (ENSMUSG00000020107.10, exon 1 of 1) 604 ENSMUSG00000020107.10 ENSMUSG00000020107 ENSMUST00000183113 Anapc16 protein_coding Interval_155525 chr8 34100981 34102034 + 0 NA intron (ENSMUSG00000031516.11, intron 2 of 6) protein_coding-intron (ENSMUSG00000031516.11, intron 2 of 6) -6469 ENSMUSG00000031516.11 ENSMUSG00000031516 ENSMUST00000143411 Dctn6 protein_coding Interval_54729 chr14 73756130 73756320 + 0 NA intron (ENSMUSG00000115289.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000115289.1, intron 1 of 3) 11743 ENSMUSG00000093873.1 ENSMUSG00000093873 ENSMUST00000177627 Gm24540 snRNA Interval_174816 chrX 167347553 167347921 + 0 NA exon (ENSMUSG00000025742.5, exon 7 of 7) protein_coding-exon (ENSMUSG00000025742.5, exon 7 of 7) -13718 ENSMUSG00000086258.1 ENSMUSG00000086258 ENSMUST00000150690 Gm15239 antisense Interval_133596 chr6 7394183 7395563 + 0 NA Intergenic Intergenic 18906 ENSMUSG00000107517.1 ENSMUSG00000107517 ENSMUST00000203145 Gm44046 TEC Interval_127584 chr5 105602661 105602886 + 0 NA intron (ENSMUSG00000054720.12, intron 2 of 2) protein_coding-intron (ENSMUSG00000054720.12, intron 3 of 3) 22333 ENSMUSG00000085771.1 ENSMUSG00000085771 ENSMUST00000150195 C230066G23Rik sense_intronic Interval_133827 chr6 12868503 12869675 + 0 NA Intergenic Intergenic 11692 ENSMUSG00000083620.1 ENSMUSG00000083620 ENSMUST00000121833 Gm15529 processed_pseudogene Interval_138090 chr6 85104402 85105764 + 0 NA Intergenic Intergenic 2270 ENSMUSG00000107925.1 ENSMUSG00000107925 ENSMUST00000203606 Gm43957 processed_pseudogene Interval_127329 chr5 102993944 102994458 + 0 NA intron (ENSMUSG00000046709.18, intron 5 of 13) protein_coding-intron (ENSMUSG00000046709.18, intron 3 of 11) -7888 ENSMUSG00000105947.1 ENSMUSG00000105947 ENSMUST00000199275 Gm43789 TEC Interval_40280 chr12 103100035 103100319 + 0 NA intron (ENSMUSG00000021198.16, intron 27 of 51) protein_coding-intron (ENSMUSG00000021198.16, intron 23 of 46) -28012 ENSMUSG00000098628.1 ENSMUSG00000098628 ENSMUST00000183635 Gm27976 misc_RNA Interval_32217 chr11 106233654 106234750 + 0 NA intron (ENSMUSG00000020705.6, intron 7 of 17) protein_coding-intron (ENSMUSG00000020705.6, intron 7 of 17) -2794 ENSMUSG00000020705.6 ENSMUSG00000020705 ENSMUST00000152860 Ddx42 protein_coding Interval_108816 chr3 131848721 131849018 + 0 NA intron (ENSMUSG00000105331.1, intron 1 of 3) lincRNA-intron (ENSMUSG00000105331.1, intron 1 of 3) 50459 ENSMUSG00000104853.2 ENSMUSG00000104853 ENSMUST00000198131 Olfr375-ps1 unprocessed_pseudogene Interval_55330 chr14 83124432 83125192 + 0 NA Intergenic Intergenic 231975 ENSMUSG00000115031.1 ENSMUSG00000115031 ENSMUST00000228219 Gm49051 processed_pseudogene Interval_12174 chr1 190530238 190530454 + 0 NA Intergenic Intergenic -47189 ENSMUSG00000093064.2 ENSMUSG00000093064 ENSMUST00000175323 Gm23153 misc_RNA Interval_38278 chr12 76874528 76876168 + 0 NA intron (ENSMUSG00000033373.16, intron 6 of 13) protein_coding-intron (ENSMUSG00000033373.16, intron 4 of 11) -11710 ENSMUSG00000033373.16 ENSMUSG00000033373 ENSMUST00000130605 Fntb protein_coding Interval_94836 chr2 95934301 95934933 + 0 NA Intergenic Intergenic 66691 ENSMUSG00000104258.1 ENSMUSG00000104258 ENSMUST00000192023 Gm37175 TEC Interval_168664 chr9 85661389 85661604 + 0 NA Intergenic Intergenic -21929 ENSMUSG00000111386.1 ENSMUSG00000111386 ENSMUST00000213802 Gm48842 lincRNA Interval_145482 chr7 35134962 35136037 + 0 NA exon (ENSMUSG00000108575.1, exon 3 of 3) lincRNA-exon (ENSMUSG00000108575.1, exon 3 of 3) 5950 ENSMUSG00000108575.1 ENSMUSG00000108575 ENSMUST00000206742 Gm35665 lincRNA Interval_57662 chr15 14117934 14119200 + 0 NA Intergenic Intergenic -24388 ENSMUSG00000115551.1 ENSMUSG00000115551 ENSMUST00000228924 Gm49115 processed_pseudogene Interval_2597 chr1 41381424 41381810 + 0 NA Intergenic Intergenic 147926 ENSMUSG00000100185.1 ENSMUSG00000100185 ENSMUST00000191087 Gm28634 lincRNA Interval_66781 chr16 37574859 37575244 + 0 NA Intergenic Intergenic -5231 ENSMUSG00000022821.13 ENSMUSG00000022821 ENSMUST00000159938 Hgd protein_coding Interval_61383 chr15 81253942 81255383 + 0 NA intron (ENSMUSG00000115970.1, intron 2 of 3) lincRNA-intron (ENSMUSG00000115970.1, intron 2 of 3) -2800 ENSMUSG00000115970.1 ENSMUSG00000115970 ENSMUST00000230042 8430426J06Rik lincRNA Interval_138081 chr6 85027329 85027907 + 0 NA intron (ENSMUSG00000033769.16, intron 1 of 2) protein_coding-intron (ENSMUSG00000033769.16, intron 1 of 16) -34956 ENSMUSG00000107629.1 ENSMUSG00000107629 ENSMUST00000203336 Gm44011 processed_pseudogene Interval_25366 chr11 46731237 46731987 + 0 NA Intergenic Intergenic -3468 ENSMUSG00000040405.13 ENSMUSG00000040405 ENSMUST00000047568 Havcr1 protein_coding Interval_25992 chr11 53364128 53365044 + 0 NA intron (ENSMUSG00000049470.13, intron 1 of 20) protein_coding-intron (ENSMUSG00000049470.13, intron 1 of 20) -18909 ENSMUSG00000082263.1 ENSMUSG00000082263 ENSMUST00000122382 Gm11188 processed_pseudogene Interval_117460 chr4 123888580 123888867 + 0 NA Intergenic Intergenic -13699 ENSMUSG00000080993.1 ENSMUSG00000080993 ENSMUST00000121015 Gm12903 processed_pseudogene Interval_142303 chr6 140542958 140543379 + 0 NA promoter-TSS (ENSMUSG00000030231.11) protein_coding-promoter-TSS (ENSMUSG00000030231.11) 12205 ENSMUSG00000084477.1 ENSMUSG00000084477 ENSMUST00000122528 Gm25780 misc_RNA Interval_34765 chr12 10554384 10556294 + 0 NA Intergenic Intergenic 61839 ENSMUSG00000112127.1 ENSMUSG00000112127 ENSMUST00000219091 Gm48886 processed_pseudogene Interval_78599 chr18 15045864 15046669 + 0 NA intron (ENSMUSG00000117450.1, intron 4 of 4) protein_coding-intron (ENSMUSG00000036225.15, intron 1 of 4) 17832 ENSMUSG00000036225.15 ENSMUSG00000036225 ENSMUST00000234685 Kctd1 protein_coding Interval_20437 chr10 117619084 117619890 + 0 NA Intergenic Intergenic 5082 ENSMUSG00000112476.1 ENSMUSG00000112476 ENSMUST00000217828 Gm32365 lincRNA Interval_135854 chr6 47935577 47935818 + 0 NA Intergenic Intergenic -7657 ENSMUSG00000072653.14 ENSMUSG00000072653 ENSMUST00000132381 Zfp783 transcribed_unprocessed_pseudogene Interval_164091 chr9 31424191 31424429 + 0 NA Intergenic Intergenic 10397 ENSMUSG00000111548.1 ENSMUSG00000111548 ENSMUST00000213951 Gm8162 processed_pseudogene Interval_150692 chr7 113419395 113419921 + 0 NA promoter-TSS (ENSMUSG00000110262.1) processed_pseudogene-promoter-TSS (ENSMUSG00000110262.1) -716 ENSMUSG00000110262.1 ENSMUSG00000110262 ENSMUST00000209994 Gm45614 processed_pseudogene Interval_47108 chr13 75835062 75836241 + 0 NA Intergenic Intergenic -4250 ENSMUSG00000021591.8 ENSMUSG00000021591 ENSMUST00000222530 Glrx protein_coding Interval_12859 chr10 6820302 6821449 + 0 NA intron (ENSMUSG00000000766.18, intron 3 of 3) protein_coding-intron (ENSMUSG00000000766.18, intron 1 of 3) 32066 ENSMUSG00000000766.18 ENSMUSG00000000766 ENSMUST00000148625 Oprm1 protein_coding Interval_12600 chr10 3833901 3834290 + 0 NA promoter-TSS (ENSMUSG00000040624.18) protein_coding-promoter-TSS (ENSMUSG00000040624.18) -784 ENSMUSG00000040624.18 ENSMUSG00000040624 ENSMUST00000141367 Plekhg1 protein_coding Interval_123522 chr5 33143012 33144583 + 0 NA intron (ENSMUSG00000011034.6, intron 5 of 14) protein_coding-intron (ENSMUSG00000011034.6, intron 5 of 14) -1687 ENSMUSG00000081618.2 ENSMUSG00000081618 ENSMUST00000117311 5033423K11Rik transcribed_processed_pseudogene Interval_116365 chr4 110290244 110291099 + 0 NA promoter-TSS (ENSMUSG00000028546.17) protein_coding-promoter-TSS (ENSMUSG00000028546.17) -3144 ENSMUSG00000028546.17 ENSMUSG00000028546 ENSMUST00000142722 Elavl4 protein_coding Interval_71037 chr17 17345370 17346575 + 0 NA exon (ENSMUSG00000043801.7, exon 1 of 1) processed_pseudogene-exon (ENSMUSG00000043801.7, exon 1 of 1) 168 ENSMUSG00000043801.7 ENSMUSG00000043801 ENSMUST00000052440 Oaz1-ps processed_pseudogene Interval_116313 chr4 109665261 109667278 + 0 NA promoter-TSS (ENSMUSG00000028551.14) protein_coding-promoter-TSS (ENSMUSG00000028551.14) 920 ENSMUSG00000028551.14 ENSMUSG00000028551 ENSMUST00000097921 Cdkn2c protein_coding Interval_143282 chr7 4939948 4940465 + 0 NA TTS (ENSMUSG00000030433.15) protein_coding-TTS (ENSMUSG00000030433.15) 3116 ENSMUSG00000035279.8 ENSMUSG00000035279 ENSMUST00000207310 Ssc5d protein_coding Interval_156857 chr8 61247246 61247925 + 0 NA intron (ENSMUSG00000031642.9, intron 2 of 10) protein_coding-intron (ENSMUSG00000031642.9, intron 2 of 11) 41287 ENSMUSG00000099419.1 ENSMUSG00000099419 ENSMUST00000188654 1700001D01Rik antisense Interval_127816 chr5 108014239 108015171 + 0 NA Intergenic Intergenic 12445 ENSMUSG00000084855.2 ENSMUSG00000084855 ENSMUST00000117916 Gm9850 processed_pseudogene Interval_135861 chr6 47983711 47984553 + 0 NA Intergenic Intergenic -6256 ENSMUSG00000107824.1 ENSMUSG00000107824 ENSMUST00000203599 Gm6443 processed_pseudogene Interval_53462 chr14 57679594 57680418 + 0 NA intron (ENSMUSG00000114942.1, intron 6 of 8) protein_coding-intron (ENSMUSG00000114942.1, intron 6 of 8) -14576 ENSMUSG00000021952.16 ENSMUSG00000021952 ENSMUST00000173638 Xpo4 protein_coding Interval_5461 chr1 89024803 89026098 + 0 NA Intergenic Intergenic 9337 ENSMUSG00000099378.1 ENSMUSG00000099378 ENSMUST00000186180 1700067G17Rik lincRNA Interval_106752 chr3 100462226 100462555 + 0 NA intron (ENSMUSG00000044468.14, intron 1 of 2) protein_coding-intron (ENSMUSG00000044468.14, intron 1 of 2) 24556 ENSMUSG00000106639.1 ENSMUSG00000106639 ENSMUST00000199065 Gm43121 lincRNA Interval_115990 chr4 106847302 106848916 + 0 NA promoter-TSS (ENSMUSG00000086940.1) lincRNA-promoter-TSS (ENSMUSG00000086940.1) -189 ENSMUSG00000086940.1 ENSMUSG00000086940 ENSMUST00000151369 Gm12746 lincRNA Interval_8671 chr1 146724908 146725400 + 0 NA promoter-TSS (ENSMUSG00000080078.2) processed_pseudogene-promoter-TSS (ENSMUSG00000080078.2) -427 ENSMUSG00000080078.2 ENSMUSG00000080078 ENSMUST00000116191 Gm15583 processed_pseudogene Interval_7964 chr1 134896071 134897087 + 0 NA intron (ENSMUSG00000073557.12, intron 2 of 24) protein_coding-intron (ENSMUSG00000073557.12, intron 2 of 23) 62437 ENSMUSG00000101168.1 ENSMUSG00000101168 ENSMUST00000188123 Gm28892 antisense Interval_2601 chr1 41769380 41769654 + 0 NA Intergenic Intergenic -148835 ENSMUSG00000100832.1 ENSMUSG00000100832 ENSMUST00000187227 Gm29260 lincRNA Interval_53818 chr14 62251940 62252446 + 0 NA Intergenic Intergenic 40854 ENSMUSG00000048281.9 ENSMUSG00000048281 ENSMUST00000225120 Dleu7 protein_coding Interval_32332 chr11 107018738 107020099 + 0 NA Intergenic Intergenic -8805 ENSMUSG00000078607.6 ENSMUSG00000078607 ENSMUST00000106767 1810010H24Rik protein_coding Interval_142377 chr6 141141181 141141407 + 0 NA Intergenic Intergenic 3247 ENSMUSG00000107462.1 ENSMUSG00000107462 ENSMUST00000203682 Gm7384 processed_pseudogene Interval_119415 chr4 137540022 137540973 + 0 NA intron (ENSMUSG00000028763.18, intron 49 of 96) protein_coding-intron (ENSMUSG00000028763.18, intron 49 of 96) 2211 ENSMUSG00000099134.1 ENSMUSG00000099134 ENSMUST00000184284 Mir7018 miRNA Interval_137419 chr6 72142355 72142689 + 0 NA TTS (ENSMUSG00000056091.12) protein_coding-TTS (ENSMUSG00000056091.12) -19582 ENSMUSG00000108709.1 ENSMUSG00000108709 ENSMUST00000205571 4933431G14Rik antisense Interval_90038 chr2 27453861 27454299 + 0 NA exon (ENSMUSG00000026918.16, exon 8 of 8) protein_coding-exon (ENSMUSG00000026918.16, exon 8 of 8) -3450 ENSMUSG00000098812.1 ENSMUSG00000098812 ENSMUST00000183455 Mir7578 miRNA Interval_47757 chr13 92381377 92381572 + 0 NA intron (ENSMUSG00000021707.5, intron 5 of 5) protein_coding-intron (ENSMUSG00000021707.5, intron 5 of 5) -26475 ENSMUSG00000014850.15 ENSMUSG00000014850 ENSMUST00000187424 Msh3 protein_coding Interval_31615 chr11 101743516 101743868 + 0 NA intron (ENSMUSG00000034931.15, intron 8 of 20) protein_coding-intron (ENSMUSG00000034931.15, intron 10 of 22) 10663 ENSMUSG00000034931.15 ENSMUSG00000034931 ENSMUST00000141461 Dhx8 protein_coding Interval_154127 chr8 12925953 12926493 + 0 NA promoter-TSS (ENSMUSG00000031442.21) protein_coding-promoter-TSS (ENSMUSG00000031442.21) -5439 ENSMUSG00000031442.21 ENSMUSG00000031442 ENSMUST00000134989 Mcf2l protein_coding Interval_161183 chr8 118285698 118286920 + 0 NA intron (ENSMUSG00000031841.19, intron 1 of 7) protein_coding-intron (ENSMUSG00000031841.19, intron 1 of 13) 95882 ENSMUSG00000110662.1 ENSMUSG00000110662 ENSMUST00000213075 Gm45722 processed_pseudogene Interval_113995 chr4 62343948 62344356 + 0 NA TTS (ENSMUSG00000066151.12) protein_coding-TTS (ENSMUSG00000066151.12) -5657 ENSMUSG00000066151.12 ENSMUSG00000066151 ENSMUST00000131977 Fkbp15 protein_coding Interval_58612 chr15 36573353 36574072 + 0 NA Intergenic Intergenic -9832 ENSMUSG00000105494.1 ENSMUSG00000105494 ENSMUST00000175424 Gm44310 miRNA Interval_26565 chr11 58937876 58939473 + 0 NA exon (ENSMUSG00000020496.10, exon 1 of 4) protein_coding-exon (ENSMUSG00000020496.10, exon 1 of 4) 242 ENSMUSG00000020496.10 ENSMUSG00000020496 ENSMUST00000094151 Rnf187 protein_coding Interval_103144 chr3 35909987 35910325 + 0 NA promoter-TSS (ENSMUSG00000027708.14) protein_coding-promoter-TSS (ENSMUSG00000027708.14) 22178 ENSMUSG00000027708.14 ENSMUSG00000027708 ENSMUST00000196174 Dcun1d1 protein_coding Interval_31889 chr11 103631936 103632197 + 0 NA exon (ENSMUSG00000020945.13, exon 3 of 4) protein_coding-exon (ENSMUSG00000020945.13, exon 3 of 4) 2955 ENSMUSG00000020945.13 ENSMUSG00000020945 ENSMUST00000140430 Lyzl6 protein_coding Interval_171022 chr9 113780107 113780425 + 0 NA intron (ENSMUSG00000033392.16, intron 6 of 10) protein_coding-intron (ENSMUSG00000033392.16, intron 6 of 15) -3968 ENSMUSG00000087992.1 ENSMUSG00000087992 ENSMUST00000157367 Gm25059 snoRNA Interval_167433 chr9 69295669 69296837 + 0 NA intron (ENSMUSG00000032238.17, intron 1 of 9) protein_coding-intron (ENSMUSG00000032238.17, intron 2 of 10) 67994 ENSMUSG00000086648.1 ENSMUSG00000086648 ENSMUST00000152570 Gm15511 antisense Interval_99026 chr2 156726237 156727111 + 0 NA intron (ENSMUSG00000061689.15, intron 1 of 6) protein_coding-intron (ENSMUSG00000061689.15, intron 1 of 6) 5614 ENSMUSG00000061689.15 ENSMUSG00000061689 ENSMUST00000123730 Dlgap4 protein_coding Interval_105050 chr3 80334060 80334400 + 0 NA intron (ENSMUSG00000102379.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000102379.1, intron 1 of 2) 365 ENSMUSG00000102379.1 ENSMUSG00000102379 ENSMUST00000193516 Gm37971 lincRNA Interval_162209 chr8 125986596 125987651 + 0 NA Intergenic Intergenic -8313 ENSMUSG00000033998.9 ENSMUSG00000033998 ENSMUST00000212831 Kcnk1 protein_coding Interval_82791 chr18 77086858 77087298 + 0 NA intron (ENSMUSG00000025423.16, intron 1 of 13) protein_coding-intron (ENSMUSG00000025423.16, intron 1 of 12) 21833 ENSMUSG00000025423.16 ENSMUSG00000025423 ENSMUST00000168882 Pias2 protein_coding Interval_51255 chr14 25567020 25567706 + 0 NA intron (ENSMUSG00000007817.15, intron 3 of 3) protein_coding-intron (ENSMUSG00000007817.15, intron 3 of 23) 32924 ENSMUSG00000093081.1 ENSMUSG00000093081 ENSMUST00000175340 Mir3075 miRNA Interval_82522 chr18 74905946 74908031 + 0 NA promoter-TSS (ENSMUSG00000088144.1) snoRNA-promoter-TSS (ENSMUSG00000088144.1) -554 ENSMUSG00000088144.1 ENSMUSG00000088144 ENSMUST00000157519 Gm24559 snoRNA Interval_139075 chr6 94779354 94781309 + 0 NA Intergenic Intergenic -19101 ENSMUSG00000107716.1 ENSMUSG00000107716 ENSMUST00000203986 Gm43997 TEC Interval_119406 chr4 137497274 137497774 + 0 NA intron (ENSMUSG00000028763.18, intron 1 of 96) protein_coding-intron (ENSMUSG00000028763.18, intron 1 of 96) -24935 ENSMUSG00000028763.18 ENSMUSG00000028763 ENSMUST00000155648 Hspg2 protein_coding Interval_133931 chr6 15761003 15761454 + 0 NA intron (ENSMUSG00000041390.18, intron 3 of 4) protein_coding-intron (ENSMUSG00000041390.18, intron 3 of 4) 40567 ENSMUSG00000041390.18 ENSMUSG00000041390 ENSMUST00000128849 Mdfic protein_coding Interval_36629 chr12 51640517 51641061 + 0 NA exon (ENSMUSG00000020954.16, exon 1 of 1) protein_coding-exon (ENSMUSG00000020954.16, exon 1 of 1) 3009 ENSMUSG00000020954.16 ENSMUSG00000020954 ENSMUST00000218212 Strn3 protein_coding Interval_82476 chr18 74316467 74316981 + 0 NA intron (ENSMUSG00000035394.11, intron 7 of 8) protein_coding-intron (ENSMUSG00000035394.11, intron 6 of 7) -12793 ENSMUSG00000095419.1 ENSMUSG00000095419 ENSMUST00000122178 Gm14328 processed_pseudogene Interval_38807 chr12 82493004 82493432 + 0 NA Intergenic Intergenic 3319 ENSMUSG00000094374.2 ENSMUSG00000094374 ENSMUST00000179295 Gm5435 processed_pseudogene Interval_84901 chr19 18687274 18687799 + 0 NA intron (ENSMUSG00000024726.10, intron 3 of 7) protein_coding-intron (ENSMUSG00000024726.10, intron 3 of 7) 16207 ENSMUSG00000024726.10 ENSMUSG00000024726 ENSMUST00000236401 Carnmt1 protein_coding Interval_52985 chr14 52720435 52720697 + 0 NA Intergenic Intergenic -6046 ENSMUSG00000096600.5 ENSMUSG00000096600 ENSMUST00000184883 Trav6d-3 TR_V_gene Interval_153920 chr8 11121549 11122271 + 0 NA Intergenic Intergenic 5355 ENSMUSG00000109151.1 ENSMUSG00000109151 ENSMUST00000208665 Gm44714 lincRNA Interval_34794 chr12 11237818 11238132 + 0 NA TTS (ENSMUSG00000051235.10) protein_coding-TTS (ENSMUSG00000051235.10) 12878 ENSMUSG00000051235.10 ENSMUSG00000051235 ENSMUST00000219537 Gen1 protein_coding Interval_85337 chr19 24935200 24936120 + 0 NA intron (ENSMUSG00000024878.9, intron 10 of 10) protein_coding-intron (ENSMUSG00000024878.9, intron 9 of 14) 6643 ENSMUSG00000104890.1 ENSMUSG00000104890 ENSMUST00000198203 Mir3084-1 miRNA Interval_100438 chr2 169018365 169018701 + 0 NA Intergenic Intergenic -1492 ENSMUSG00000052368.2 ENSMUSG00000052368 ENSMUST00000063891 Gm9873 lincRNA Interval_87487 chr19 53004828 53005407 + 0 NA promoter-TSS (ENSMUSG00000025027.18) protein_coding-promoter-TSS (ENSMUSG00000025027.18) -213 ENSMUSG00000025027.18 ENSMUSG00000025027 ENSMUST00000182939 Xpnpep1 protein_coding Interval_125144 chr5 64833132 64834032 + 0 NA TTS (ENSMUSG00000029178.14) protein_coding-TTS (ENSMUSG00000029178.14) 29568 ENSMUSG00000106205.1 ENSMUSG00000106205 ENSMUST00000198074 C230096K16Rik TEC Interval_87751 chr19 55626163 55626786 + 0 NA TTS (ENSMUSG00000024983.10) protein_coding-TTS (ENSMUSG00000024983.10) -115790 ENSMUSG00000024985.20 ENSMUSG00000024985 ENSMUST00000148666 Tcf7l2 protein_coding Interval_12831 chr10 5963172 5963787 + 0 NA Intergenic Intergenic -41093 ENSMUSG00000019775.17 ENSMUSG00000019775 ENSMUST00000019909 Rgs17 protein_coding Interval_154602 chr8 21995371 21995688 + 0 NA intron (ENSMUSG00000006567.11, intron 21 of 21) protein_coding-intron (ENSMUSG00000006567.11, intron 20 of 20) 25754 ENSMUSG00000017049.4 ENSMUSG00000017049 ENSMUST00000017193 Ccdc70 protein_coding Interval_45815 chr13 58273389 58274936 + 0 NA promoter-TSS (ENSMUSG00000021552.7) protein_coding-promoter-TSS (ENSMUSG00000021552.7) -7029 ENSMUSG00000097399.7 ENSMUSG00000097399 ENSMUST00000190479 Gm26555 antisense Interval_108628 chr3 129640433 129642180 + 0 NA Intergenic Intergenic 42935 ENSMUSG00000092701.1 ENSMUSG00000092701 ENSMUST00000174960 Gm24515 miRNA Interval_138056 chr6 84869937 84870244 + 0 NA intron (ENSMUSG00000033769.16, intron 7 of 13) protein_coding-intron (ENSMUSG00000033769.16, intron 8 of 16) 23898 ENSMUSG00000033769.16 ENSMUSG00000033769 ENSMUST00000162786 Exoc6b protein_coding Interval_63310 chr15 100256033 100256812 + 0 NA intron (ENSMUSG00000023027.13, intron 2 of 2) protein_coding-intron (ENSMUSG00000023027.13, intron 6 of 6) 24224 ENSMUSG00000023027.13 ENSMUSG00000023027 ENSMUST00000166435 Atf1 protein_coding Interval_25132 chr11 44427546 44428325 + 0 NA Intergenic Intergenic 27872 ENSMUSG00000004296.14 ENSMUSG00000004296 ENSMUST00000102796 Il12b protein_coding Interval_165323 chr9 46301824 46302723 + 0 NA Intergenic Intergenic 9314 ENSMUSG00000056617.12 ENSMUSG00000056617 ENSMUST00000160795 4931429L15Rik protein_coding Interval_38093 chr12 75615969 75617190 + 0 NA Intergenic Intergenic 14739 ENSMUSG00000118552.1 ENSMUSG00000118552 ENSMUST00000238938 AC124742.1 protein_coding Interval_99698 chr2 164381873 164382083 + 0 NA intron (ENSMUSG00000017002.14, intron 1 of 2) protein_coding-intron (ENSMUSG00000017002.14, intron 1 of 2) 7117 ENSMUSG00000017002.14 ENSMUSG00000017002 ENSMUST00000167427 Slpi protein_coding Interval_18959 chr10 93415430 93416223 + 0 NA Intergenic Intergenic -17281 ENSMUSG00000098679.1 ENSMUSG00000098679 ENSMUST00000183565 Mir7688 miRNA Interval_172470 chrX 20853365 20853726 + 0 NA TTS (ENSMUSG00000001127.12) protein_coding-TTS (ENSMUSG00000001127.12) 4981 ENSMUSG00000001127.12 ENSMUSG00000001127 ENSMUST00000128250 Araf protein_coding Interval_141152 chr6 125274769 125275428 + 0 NA intron (ENSMUSG00000108129.2, intron 3 of 3) processed_transcript-intron (ENSMUSG00000108129.2, intron 3 of 3) 9479 ENSMUSG00000108129.2 ENSMUSG00000108129 ENSMUST00000205000 4930417O13Rik processed_transcript Interval_52780 chr14 49829246 49830041 + 0 NA Intergenic Intergenic 23794 ENSMUSG00000115212.1 ENSMUSG00000115212 ENSMUST00000228347 Gm8417 transcribed_unprocessed_pseudogene Interval_32667 chr11 109520973 109521527 + 0 NA intron (ENSMUSG00000020604.13, intron 3 of 11) protein_coding-intron (ENSMUSG00000020604.13, intron 5 of 13) -21426 ENSMUSG00000088106.1 ENSMUSG00000088106 ENSMUST00000157481 Gm22378 snRNA Interval_154102 chr8 12701757 12703129 + 0 NA Intergenic Intergenic 16684 ENSMUSG00000074469.6 ENSMUSG00000074469 ENSMUST00000151188 Gm15348 lincRNA Interval_79366 chr18 31253159 31254411 + 0 NA intron (ENSMUSG00000057455.12, intron 1 of 4) protein_coding-intron (ENSMUSG00000057455.12, intron 1 of 3) -41053 ENSMUSG00000057455.12 ENSMUSG00000057455 ENSMUST00000139924 Rit2 protein_coding Interval_32760 chr11 110386108 110386699 + 0 NA Intergenic Intergenic -48687 ENSMUSG00000018800.14 ENSMUSG00000018800 ENSMUST00000148984 Abca5 protein_coding Interval_171577 chr9 119313229 119314358 + 0 NA intron (ENSMUSG00000036737.12, intron 1 of 18) protein_coding-intron (ENSMUSG00000036737.12, intron 1 of 17) -7036 ENSMUSG00000088713.1 ENSMUSG00000088713 ENSMUST00000158088 Gm22729 snoRNA Interval_88984 chr2 13994179 13994568 + 0 NA intron (ENSMUSG00000063275.15, intron 6 of 7) protein_coding-intron (ENSMUSG00000063275.15, intron 6 of 7) 25676 ENSMUSG00000102553.1 ENSMUSG00000102553 ENSMUST00000191894 D930036K23Rik TEC Interval_77692 chr17 94335187 94336874 + 0 NA Intergenic Intergenic -7167 ENSMUSG00000077433.1 ENSMUSG00000077433 ENSMUST00000104245 Gm22593 snRNA Interval_68992 chr16 89990104 89990740 + 0 NA intron (ENSMUSG00000002489.16, intron 2 of 11) protein_coding-intron (ENSMUSG00000002489.16, intron 2 of 11) -99561 ENSMUSG00000116536.1 ENSMUSG00000116536 ENSMUST00000232386 Gm2805 processed_pseudogene Interval_89143 chr2 17277121 17277759 + 0 NA Intergenic Intergenic -91953 ENSMUSG00000085193.1 ENSMUSG00000085193 ENSMUST00000152803 Gm13322 lincRNA Interval_81099 chr18 53884068 53884366 + 0 NA intron (ENSMUSG00000073563.3, intron 1 of 12) protein_coding-intron (ENSMUSG00000073563.3, intron 1 of 12) 22029 ENSMUSG00000073563.3 ENSMUSG00000073563 ENSMUST00000236399 Csnk1g3 protein_coding Interval_64717 chr16 14439145 14439918 + 0 NA intron (ENSMUSG00000023088.17, intron 14 of 30) protein_coding-intron (ENSMUSG00000023088.17, intron 14 of 30) 44215 ENSMUSG00000116439.1 ENSMUSG00000116439 ENSMUST00000231182 Gm49528 unprocessed_pseudogene Interval_113153 chr4 48650836 48651719 + 0 NA intron (ENSMUSG00000028347.14, intron 3 of 4) protein_coding-intron (ENSMUSG00000028347.14, intron 8 of 9) -12237 ENSMUSG00000028348.7 ENSMUSG00000028348 ENSMUST00000030033 Cavin4 protein_coding Interval_126468 chr5 88734665 88735914 + 0 NA intron (ENSMUSG00000006262.15, intron 1 of 1) protein_coding-intron (ENSMUSG00000006262.15, intron 1 of 5) 4440 ENSMUSG00000095524.1 ENSMUSG00000095524 ENSMUST00000121563 Gm15682 processed_pseudogene Interval_97513 chr2 138277910 138280657 + 0 NA intron (ENSMUSG00000062098.11, intron 2 of 4) protein_coding-intron (ENSMUSG00000062098.11, intron 1 of 3) 22621 ENSMUSG00000062098.11 ENSMUSG00000062098 ENSMUST00000075410 Btbd3 protein_coding Interval_14023 chr10 25649769 25650332 + 0 NA intron (ENSMUSG00000101537.1, intron 3 of 3) antisense-intron (ENSMUSG00000101537.1, intron 3 of 3) -21176 ENSMUSG00000112101.1 ENSMUSG00000112101 ENSMUST00000219989 Gm47924 processed_pseudogene Interval_83113 chr18 81472182 81472459 + 0 NA Intergenic Intergenic -8037 ENSMUSG00000118300.1 ENSMUSG00000118300 ENSMUST00000237597 Gm50412 lincRNA Interval_53540 chr14 58619602 58620162 + 0 NA Intergenic Intergenic 30518 ENSMUSG00000077201.1 ENSMUSG00000077201 ENSMUST00000104013 Gm25614 snoRNA Interval_83795 chr19 4748758 4749441 + 0 NA exon (ENSMUSG00000067889.6, exon 30 of 37) protein_coding-exon (ENSMUSG00000067889.6, exon 30 of 37) -7806 ENSMUSG00000033760.17 ENSMUSG00000033760 ENSMUST00000183332 Rbm4b protein_coding Interval_88725 chr2 10010133 10010749 + 0 NA intron (ENSMUSG00000025782.12, intron 2 of 6) protein_coding-intron (ENSMUSG00000025782.12, intron 2 of 6) -37397 ENSMUSG00000103570.1 ENSMUSG00000103570 ENSMUST00000194765 C630004M23Rik TEC Interval_56645 chr14 121115421 121115620 + 0 NA intron (ENSMUSG00000025555.14, intron 1 of 7) protein_coding-intron (ENSMUSG00000025555.14, intron 2 of 26) 13441 ENSMUSG00000025555.14 ENSMUSG00000025555 ENSMUST00000137971 Farp1 protein_coding Interval_169150 chr9 94613911 94614751 + 0 NA Intergenic Intergenic 22135 ENSMUSG00000111019.1 ENSMUSG00000111019 ENSMUST00000216350 Gm39404 processed_pseudogene Interval_139676 chr6 106754201 106754533 + 0 NA Intergenic Intergenic -5419 ENSMUSG00000005364.11 ENSMUSG00000005364 ENSMUST00000167925 Il5ra protein_coding Interval_145918 chr7 41673877 41674955 + 0 NA intron (ENSMUSG00000074164.12, intron 1 of 2) transcribed_unprocessed_pseudogene-intron (ENSMUSG00000074164.12, intron 1 of 6) -5109 ENSMUSG00000091004.2 ENSMUSG00000091004 ENSMUST00000165001 Gm6872 processed_pseudogene Interval_67806 chr16 57339074 57339293 + 0 NA intron (ENSMUSG00000116789.1, intron 1 of 1) protein_coding-intron (ENSMUSG00000022748.8, intron 1 of 9) 873 ENSMUSG00000116789.1 ENSMUSG00000116789 ENSMUST00000232099 Gm49579 antisense Interval_111527 chr4 22486949 22490579 + 0 NA promoter-TSS (ENSMUSG00000095139.2) protein_coding-promoter-TSS (ENSMUSG00000095139.2) -398 ENSMUSG00000095139.2 ENSMUSG00000095139 ENSMUST00000178174 Pou3f2 protein_coding Interval_150630 chr7 112919981 112920575 + 0 NA Intergenic Intergenic -33684 ENSMUSG00000098132.1 ENSMUSG00000098132 ENSMUST00000182858 Rassf10 protein_coding Interval_150408 chr7 110202341 110203287 + 0 NA Intergenic Intergenic -18918 ENSMUSG00000031015.8 ENSMUSG00000031015 ENSMUST00000210513 Swap70 protein_coding Interval_78246 chr18 10648689 10648893 + 0 NA intron (ENSMUSG00000002475.16, intron 2 of 4) protein_coding-intron (ENSMUSG00000002475.16, intron 6 of 8) 15527 ENSMUSG00000002475.16 ENSMUSG00000002475 ENSMUST00000234419 Abhd3 protein_coding Interval_16929 chr10 69976142 69976630 + 0 NA intron (ENSMUSG00000069601.14, intron 31 of 42) protein_coding-intron (ENSMUSG00000069601.14, intron 6 of 16) -198625 ENSMUSG00000048701.13 ENSMUSG00000048701 ENSMUST00000135607 Ccdc6 protein_coding Interval_139252 chr6 97576773 97577111 + 0 NA intron (ENSMUSG00000030064.16, intron 1 of 7) protein_coding-intron (ENSMUSG00000030064.16, intron 1 of 23) 4150 ENSMUSG00000108093.1 ENSMUSG00000108093 ENSMUST00000204031 Gm44102 TEC Interval_114085 chr4 63319388 63320050 + 0 NA intron (ENSMUSG00000045672.15, intron 45 of 57) protein_coding-intron (ENSMUSG00000045672.15, intron 48 of 60) -24841 ENSMUSG00000039196.2 ENSMUSG00000039196 ENSMUST00000030044 Orm1 protein_coding Interval_139328 chr6 98941240 98941487 + 0 NA intron (ENSMUSG00000030067.17, intron 13 of 16) protein_coding-intron (ENSMUSG00000030067.17, intron 13 of 15) -80548 ENSMUSG00000107514.1 ENSMUSG00000107514 ENSMUST00000203192 Gm32381 processed_pseudogene Interval_95905 chr2 118245864 118246631 + 0 NA intron (ENSMUSG00000027344.14, intron 5 of 5) protein_coding-intron (ENSMUSG00000027344.14, intron 5 of 5) 2535 ENSMUSG00000093368.1 ENSMUSG00000093368 ENSMUST00000175627 Gm22800 miRNA Interval_14954 chr10 41434728 41435782 + 0 NA TTS (ENSMUSG00000091415.5) protein_coding-TTS (ENSMUSG00000091415.5) -15180 ENSMUSG00000019826.11 ENSMUSG00000019826 ENSMUST00000215881 Zbtb24 protein_coding Interval_42693 chr13 17999345 17999747 + 0 NA Intergenic Intergenic -6443 ENSMUSG00000075054.5 ENSMUSG00000075054 ENSMUST00000222308 Yae1d1 protein_coding Interval_15245 chr10 43689457 43689831 + 0 NA intron (ENSMUSG00000075184.3, intron 3 of 4) lincRNA-intron (ENSMUSG00000075184.3, intron 3 of 4) 2184 ENSMUSG00000111575.1 ENSMUSG00000111575 ENSMUST00000214822 Gm47926 lincRNA Interval_141361 chr6 127665078 127666025 + 0 NA intron (ENSMUSG00000061414.8, intron 17 of 18) protein_coding-intron (ENSMUSG00000061414.8, intron 17 of 18) 21111 ENSMUSG00000107253.1 ENSMUSG00000107253 ENSMUST00000202671 Gm43634 lincRNA Interval_118259 chr4 129868234 129868987 + 0 NA Intergenic Intergenic 13539 ENSMUSG00000073753.4 ENSMUSG00000073753 ENSMUST00000097869 Gm10571 pseudogene Interval_174557 chrX 157657252 157657905 + 0 NA Intergenic Intergenic -6020 ENSMUSG00000083117.1 ENSMUSG00000083117 ENSMUST00000122191 Gm15171 processed_pseudogene Interval_139321 chr6 98799512 98801613 + 0 NA Intergenic Intergenic 42813 ENSMUSG00000107938.1 ENSMUSG00000107938 ENSMUST00000203053 Gm32308 processed_pseudogene Interval_17032 chr10 70698349 70698720 + 0 NA Intergenic Intergenic 40310 ENSMUSG00000112607.1 ENSMUSG00000112607 ENSMUST00000219486 Gm33979 lincRNA Interval_110441 chr3 158195888 158196387 + 0 NA intron (ENSMUSG00000028176.13, intron 11 of 24) protein_coding-intron (ENSMUSG00000028176.13, intron 12 of 27) -10732 ENSMUSG00000104647.1 ENSMUSG00000104647 ENSMUST00000199292 Gm43485 TEC Interval_55615 chr14 95874215 95874394 + 0 NA Intergenic Intergenic -6950 ENSMUSG00000034689.2 ENSMUSG00000034689 ENSMUST00000045892 Spertl protein_coding Interval_53926 chr14 63458308 63458844 + 0 NA intron (ENSMUSG00000035095.11, intron 3 of 3) protein_coding-intron (ENSMUSG00000035095.11, intron 3 of 3) 16800 ENSMUSG00000114258.1 ENSMUSG00000114258 ENSMUST00000226020 Gm47074 processed_pseudogene Interval_54191 chr14 66111486 66111786 + 0 NA promoter-TSS (ENSMUSG00000022040.8) protein_coding-promoter-TSS (ENSMUSG00000022040.8) -976 ENSMUSG00000022040.8 ENSMUSG00000022040 ENSMUST00000070515 Ephx2 protein_coding Interval_167814 chr9 72851697 72852772 + 0 NA intron (ENSMUSG00000036030.9, intron 8 of 19) protein_coding-intron (ENSMUSG00000036030.9, intron 8 of 19) -17418 ENSMUSG00000102971.1 ENSMUSG00000102971 ENSMUST00000192843 A730062M13Rik TEC Interval_151686 chr7 126031840 126032545 + 0 NA intron (ENSMUSG00000046182.8, intron 1 of 6) protein_coding-intron (ENSMUSG00000046182.8, intron 1 of 6) 32255 ENSMUSG00000108376.1 ENSMUSG00000108376 ENSMUST00000206586 Gm44874 TEC Interval_100944 chr2 173552779 173554521 + 0 NA Intergenic Intergenic 24630 ENSMUSG00000027517.14 ENSMUSG00000027517 ENSMUST00000147693 Ankrd60 protein_coding Interval_31784 chr11 102829144 102829519 + 0 NA promoter-TSS (ENSMUSG00000064788.1) snoRNA-promoter-TSS (ENSMUSG00000064788.1) -547 ENSMUSG00000064788.1 ENSMUSG00000064788 ENSMUST00000082854 Gm22683 snoRNA Interval_54703 chr14 73481811 73482317 + 0 NA Intergenic Intergenic -11029 ENSMUSG00000115530.1 ENSMUSG00000115530 ENSMUST00000226353 Gm4266 processed_pseudogene Interval_9701 chr1 161147964 161148560 + 0 NA intron (ENSMUSG00000044835.15, intron 1 of 4) protein_coding-intron (ENSMUSG00000044835.15, intron 1 of 5) 5539 ENSMUSG00000044835.15 ENSMUSG00000044835 ENSMUST00000052245 Ankrd45 protein_coding Interval_132993 chr5 149157138 149157401 + 0 NA intron (ENSMUSG00000097191.2, intron 2 of 3) lincRNA-intron (ENSMUSG00000097191.2, intron 2 of 3) -1250 ENSMUSG00000024437.6 ENSMUSG00000024437 ENSMUST00000025307 Gm8615 transcribed_processed_pseudogene Interval_38062 chr12 75427355 75427688 + 0 NA Intergenic Intergenic -10740 ENSMUSG00000048982.3 ENSMUSG00000048982 ENSMUST00000051079 Gphb5 protein_coding Interval_5779 chr1 91757436 91757641 + 0 NA Intergenic Intergenic -43932 ENSMUSG00000007805.4 ENSMUSG00000007805 ENSMUST00000186075 Twist2 protein_coding Interval_45164 chr13 52879145 52880209 + 0 NA intron (ENSMUSG00000021460.17, intron 5 of 9) protein_coding-intron (ENSMUSG00000021460.17, intron 6 of 9) 33269 ENSMUSG00000021460.17 ENSMUSG00000021460 ENSMUST00000151469 Auh protein_coding Interval_18337 chr10 85021187 85021413 + 0 NA Intergenic Intergenic 81195 ENSMUSG00000050035.7 ENSMUSG00000050035 ENSMUST00000216889 Fhl4 protein_coding Interval_142161 chr6 137716907 137717107 + 0 NA Intergenic Intergenic -28033 ENSMUSG00000030224.10 ENSMUSG00000030224 ENSMUST00000137235 Strap protein_coding Interval_39263 chr12 86305240 86306132 + 0 NA intron (ENSMUSG00000097488.1, intron 1 of 3) lincRNA-intron (ENSMUSG00000097488.1, intron 1 of 3) 320 ENSMUSG00000097488.1 ENSMUSG00000097488 ENSMUST00000181495 4732487G21Rik lincRNA Interval_46183 chr13 62268327 62269044 + 0 NA intron (ENSMUSG00000113081.1, intron 1 of 2) transcribed_processed_pseudogene-intron (ENSMUSG00000113081.1, intron 1 of 2) -4076 ENSMUSG00000113081.1 ENSMUSG00000113081 ENSMUST00000221763 Gm3333 transcribed_processed_pseudogene Interval_15427 chr10 46207138 46207578 + 0 NA Intergenic Intergenic -93459 ENSMUSG00000111182.1 ENSMUSG00000111182 ENSMUST00000217441 Gm35430 lincRNA Interval_141826 chr6 134756364 134756858 + 0 NA intron (ENSMUSG00000030203.17, intron 1 of 4) protein_coding-intron (ENSMUSG00000030203.17, intron 3 of 6) 2365 ENSMUSG00000108196.1 ENSMUSG00000108196 ENSMUST00000204237 Gm36328 antisense Interval_117368 chr4 123290543 123290803 + 0 NA promoter-TSS (ENSMUSG00000064655.1) snoRNA-promoter-TSS (ENSMUSG00000064655.1) -671 ENSMUSG00000064655.1 ENSMUSG00000064655 ENSMUST00000082721 Gm25788 snoRNA Interval_122056 chr5 14866077 14868432 + 0 NA Intergenic Intergenic 47599 ENSMUSG00000033219.8 ENSMUSG00000033219 ENSMUST00000154544 Gm9758 protein_coding Interval_100315 chr2 168333599 168334553 + 0 NA Intergenic Intergenic -1624 ENSMUSG00000064961.1 ENSMUSG00000064961 ENSMUST00000083027 Gm22704 snoRNA Interval_97213 chr2 132282288 132283507 + 0 NA intron (ENSMUSG00000058793.14, intron 1 of 3) protein_coding-intron (ENSMUSG00000058793.14, intron 1 of 12) 19656 ENSMUSG00000058793.14 ENSMUSG00000058793 ENSMUST00000138194 Cds2 protein_coding Interval_22205 chr11 7151621 7151899 + 0 NA intron (ENSMUSG00000020431.5, intron 14 of 19) protein_coding-intron (ENSMUSG00000020431.5, intron 14 of 19) -8122 ENSMUSG00000020431.5 ENSMUSG00000020431 ENSMUST00000135398 Adcy1 protein_coding Interval_87966 chr19 57424725 57425867 + 0 NA Intergenic Intergenic -1802 ENSMUSG00000117927.1 ENSMUSG00000117927 ENSMUST00000237878 Gm50271 lincRNA Interval_4808 chr1 79580738 79582293 + 0 NA Intergenic Intergenic 39519 ENSMUSG00000102235.1 ENSMUSG00000102235 ENSMUST00000195349 Gm37886 TEC Interval_166472 chr9 59766757 59767680 + 0 NA promoter-TSS (ENSMUSG00000087239.1) processed_pseudogene-promoter-TSS (ENSMUSG00000087239.1) -15 ENSMUSG00000087239.1 ENSMUSG00000087239 ENSMUST00000139070 Gm7613 processed_pseudogene Interval_154497 chr8 18693359 18695062 + 0 NA intron (ENSMUSG00000031465.6, intron 4 of 4) protein_coding-intron (ENSMUSG00000031465.6, intron 8 of 8) 5337 ENSMUSG00000031465.6 ENSMUSG00000031465 ENSMUST00000170200 Angpt2 protein_coding Interval_30657 chr11 95723602 95724488 + 0 NA intron (ENSMUSG00000075595.9, intron 1 of 6) protein_coding-intron (ENSMUSG00000075595.9, intron 1 of 5) -11291 ENSMUSG00000086191.1 ENSMUSG00000086191 ENSMUST00000155531 Zfp652os antisense Interval_113009 chr4 46824941 46825379 + 0 NA intron (ENSMUSG00000039809.10, intron 2 of 4) protein_coding-intron (ENSMUSG00000039809.10, intron 3 of 18) 34742 ENSMUSG00000039809.10 ENSMUSG00000039809 ENSMUST00000206773 Gabbr2 protein_coding Interval_42482 chr13 14019167 14019699 + 0 NA exon (ENSMUSG00000039233.12, exon 4 of 4) protein_coding-exon (ENSMUSG00000039233.12, exon 4 of 4) -9930 ENSMUSG00000039233.12 ENSMUSG00000039233 ENSMUST00000160776 Tbce protein_coding Interval_28869 chr11 78883363 78883951 + 0 NA Intergenic Intergenic -41519 ENSMUSG00000020826.9 ENSMUSG00000020826 ENSMUST00000214397 Nos2 protein_coding Interval_89089 chr2 16133051 16133404 + 0 NA intron (ENSMUSG00000075520.5, intron 33 of 38) protein_coding-intron (ENSMUSG00000075520.5, intron 33 of 38) -109802 ENSMUSG00000103865.1 ENSMUSG00000103865 ENSMUST00000193596 Gm37416 TEC Interval_153134 chr7 141569352 141571442 + 0 NA intron (ENSMUSG00000002957.11, intron 1 of 3) protein_coding-intron (ENSMUSG00000002957.11, intron 1 of 21) 8189 ENSMUSG00000002957.11 ENSMUSG00000002957 ENSMUST00000201261 Ap2a2 protein_coding Interval_162164 chr8 125649267 125649539 + 0 NA Intergenic Intergenic -20415 ENSMUSG00000050930.5 ENSMUSG00000050930 ENSMUST00000053078 Map10 protein_coding Interval_1258 chr1 18412895 18413190 + 0 NA Intergenic Intergenic -147962 ENSMUSG00000067773.6 ENSMUSG00000067773 ENSMUST00000097817 Defb41 protein_coding Interval_21079 chr10 125986114 125987129 + 0 NA promoter-TSS (ENSMUSG00000020105.9) protein_coding-promoter-TSS (ENSMUSG00000020105.9) 20387 ENSMUSG00000020105.9 ENSMUSG00000020105 ENSMUST00000219974 Lrig3 protein_coding Interval_3148 chr1 54008369 54008614 + 0 NA intron (ENSMUSG00000042807.15, intron 2 of 3) protein_coding-intron (ENSMUSG00000042807.15, intron 2 of 28) -121550 ENSMUSG00000087949.1 ENSMUSG00000087949 ENSMUST00000157324 Gm24251 snRNA Interval_116601 chr4 115986502 115986739 + 0 NA intron (ENSMUSG00000034171.13, intron 13 of 14) protein_coding-intron (ENSMUSG00000034171.13, intron 13 of 14) 13317 ENSMUSG00000034171.13 ENSMUSG00000034171 ENSMUST00000150614 Faah protein_coding Interval_17953 chr10 81044664 81045660 + 0 NA intron (ENSMUSG00000004937.6, intron 11 of 11) protein_coding-intron (ENSMUSG00000004937.6, intron 11 of 11) -11250 ENSMUSG00000046822.14 ENSMUSG00000046822 ENSMUST00000152177 Slc39a3 protein_coding Interval_50493 chr14 14058339 14058830 + 0 NA intron (ENSMUSG00000021738.5, intron 5 of 12) protein_coding-intron (ENSMUSG00000021738.5, intron 4 of 11) 45440 ENSMUSG00000021738.5 ENSMUSG00000021738 ENSMUST00000224315 Atxn7 protein_coding Interval_107860 chr3 116347048 116348200 + 0 NA intron (ENSMUSG00000033502.15, intron 7 of 14) protein_coding-intron (ENSMUSG00000033502.15, intron 7 of 15) -2479 ENSMUSG00000106005.1 ENSMUSG00000106005 ENSMUST00000196669 Gm29151 antisense Interval_2546 chr1 40147977 40148161 + 0 NA Intergenic Intergenic 59558 ENSMUSG00000102975.1 ENSMUSG00000102975 ENSMUST00000193969 Gm37347 TEC Interval_121905 chr5 9419848 9420234 + 0 NA intron (ENSMUSG00000056004.16, intron 5 of 21) protein_coding-intron (ENSMUSG00000056004.16, intron 5 of 21) 44337 ENSMUSG00000077896.1 ENSMUSG00000077896 ENSMUST00000104703 Mir879 miRNA Interval_109232 chr3 138130616 138131496 + 0 NA intron (ENSMUSG00000028158.14, intron 3 of 19) protein_coding-intron (ENSMUSG00000028158.14, intron 1 of 17) -12461 ENSMUSG00000004127.12 ENSMUSG00000004127 ENSMUST00000161141 Trmt10a protein_coding Interval_136374 chr6 53910007 53910196 + 0 NA intron (ENSMUSG00000052955.5, intron 11 of 12) protein_coding-intron (ENSMUSG00000052955.5, intron 11 of 12) -37953 ENSMUSG00000094527.1 ENSMUSG00000094527 ENSMUST00000178568 Gm22910 snoRNA Interval_65025 chr16 18554556 18555812 + 0 NA intron (ENSMUSG00000000884.17, intron 7 of 7) protein_coding-intron (ENSMUSG00000000884.17, intron 7 of 7) 33624 ENSMUSG00000009097.10 ENSMUSG00000009097 ENSMUST00000232589 Tbx1 protein_coding Interval_144809 chr7 28379034 28379746 + 0 NA promoter-TSS (ENSMUSG00000044786.6) protein_coding-promoter-TSS (ENSMUSG00000044786.6) -135 ENSMUSG00000044786.6 ENSMUSG00000044786 ENSMUST00000209061 Zfp36 protein_coding Interval_1379 chr1 21166119 21167148 + 0 NA Intergenic Intergenic -12355 ENSMUSG00000100819.1 ENSMUSG00000100819 ENSMUST00000189119 Gm2693 unprocessed_pseudogene Interval_166859 chr9 63308473 63308676 + 0 NA intron (ENSMUSG00000058444.8, intron 8 of 21) protein_coding-intron (ENSMUSG00000058444.8, intron 8 of 21) 69303 ENSMUSG00000058444.8 ENSMUSG00000058444 ENSMUST00000216999 Map2k5 protein_coding Interval_157393 chr8 70093057 70093403 + 0 NA exon (ENSMUSG00000002341.8, exon 15 of 15) protein_coding-exon (ENSMUSG00000002341.8, exon 15 of 15) 9086 ENSMUSG00000007594.10 ENSMUSG00000007594 ENSMUST00000213092 Hapln4 protein_coding Interval_120254 chr4 144940982 144942095 + 0 NA Intergenic Intergenic 17310 ENSMUSG00000103911.1 ENSMUSG00000103911 ENSMUST00000193467 Gm38074 TEC Interval_50136 chr14 8206136 8207875 + 0 NA Intergenic Intergenic -7497 ENSMUSG00000021752.13 ENSMUSG00000021752 ENSMUST00000170111 Kctd6 protein_coding Interval_31823 chr11 103158499 103159331 + 0 NA Intergenic Intergenic -12192 ENSMUSG00000055805.15 ENSMUSG00000055805 ENSMUST00000129726 Fmnl1 protein_coding Interval_6636 chr1 118450031 118450731 + 0 NA intron (ENSMUSG00000064302.13, intron 2 of 31) protein_coding-intron (ENSMUSG00000064302.13, intron 2 of 39) 3104 ENSMUSG00000077257.1 ENSMUSG00000077257 ENSMUST00000104069 Gm26080 snoRNA Interval_57882 chr15 24589063 24589446 + 0 NA Intergenic Intergenic 16224 ENSMUSG00000115004.1 ENSMUSG00000115004 ENSMUST00000226982 Gm48920 processed_pseudogene Interval_66723 chr16 36634723 36635656 + 0 NA intron (ENSMUSG00000022901.13, intron 1 of 7) protein_coding-intron (ENSMUSG00000022901.13, intron 1 of 7) -30670 ENSMUSG00000022901.13 ENSMUSG00000022901 ENSMUST00000145506 Cd86 protein_coding Interval_56502 chr14 119267785 119268008 + 0 NA intron (ENSMUSG00000053465.6, intron 1 of 1) protein_coding-intron (ENSMUSG00000053465.6, intron 1 of 1) -10528 ENSMUSG00000115684.1 ENSMUSG00000115684 ENSMUST00000227446 Gm6087 processed_pseudogene Interval_86182 chr19 37584736 37585140 + 0 NA intron (ENSMUSG00000053799.8, intron 9 of 22) protein_coding-intron (ENSMUSG00000053799.8, intron 8 of 21) 64059 ENSMUSG00000053799.8 ENSMUSG00000053799 ENSMUST00000238817 Exoc6 protein_coding Interval_125218 chr5 65435347 65436491 + 0 NA promoter-TSS (ENSMUSG00000029201.14) protein_coding-promoter-TSS (ENSMUSG00000029201.14) -4339 ENSMUSG00000104917.1 ENSMUSG00000104917 ENSMUST00000200537 Gm43289 TEC Interval_101607 chr3 7666947 7667615 + 0 NA intron (ENSMUSG00000097804.1, intron 2 of 2) antisense-intron (ENSMUSG00000097804.1, intron 2 of 2) -53554 ENSMUSG00000040329.14 ENSMUSG00000040329 ENSMUST00000191681 Il7 protein_coding Interval_88685 chr2 9739226 9740005 + 0 NA Intergenic Intergenic -108274 ENSMUSG00000104276.1 ENSMUSG00000104276 ENSMUST00000191950 Gm37866 TEC Interval_42632 chr13 17342454 17342822 + 0 NA intron (ENSMUSG00000055137.7, intron 9 of 13) protein_coding-intron (ENSMUSG00000055137.7, intron 9 of 13) 5039 ENSMUSG00000113219.1 ENSMUSG00000113219 ENSMUST00000221419 Gm17890 processed_pseudogene Interval_15009 chr10 41887046 41887873 + 0 NA promoter-TSS (ENSMUSG00000038332.13) protein_coding-promoter-TSS (ENSMUSG00000038332.13) -10914 ENSMUSG00000038332.13 ENSMUSG00000038332 ENSMUST00000214835 Sesn1 protein_coding Interval_47356 chr13 81799972 81800353 + 0 NA Intergenic Intergenic 15775 ENSMUSG00000021537.9 ENSMUSG00000021537 ENSMUST00000224168 Cetn3 protein_coding Interval_1832 chr1 34060739 34061402 + 0 NA intron (ENSMUSG00000026131.20, intron 1 of 97) protein_coding-intron (ENSMUSG00000026131.20, intron 1 of 97) -16157 ENSMUSG00000026131.20 ENSMUSG00000026131 ENSMUST00000182507 Dst protein_coding Interval_141699 chr6 133761964 133762723 + 0 NA promoter-TSS (ENSMUSG00000093148.1) miRNA-promoter-TSS (ENSMUSG00000093148.1) -573 ENSMUSG00000093148.1 ENSMUSG00000093148 ENSMUST00000175407 Gm23375 miRNA Interval_74347 chr17 49205876 49207051 + 0 NA Intergenic Intergenic -40705 ENSMUSG00000117115.1 ENSMUSG00000117115 ENSMUST00000233339 Gm9586 processed_pseudogene Interval_124587 chr5 52013083 52013303 + 0 NA Intergenic Intergenic 69139 ENSMUSG00000106292.1 ENSMUSG00000106292 ENSMUST00000195914 Gm43174 TEC Interval_134762 chr6 31293154 31293466 + 0 NA TTS (ENSMUSG00000087380.7) processed_transcript-TTS (ENSMUSG00000087380.7) 776 ENSMUSG00000087380.7 ENSMUSG00000087380 ENSMUST00000124811 2210408F21Rik processed_transcript Interval_165340 chr9 46408548 46409023 + 0 NA Intergenic Intergenic 11423 ENSMUSG00000110802.1 ENSMUSG00000110802 ENSMUST00000213920 Gm47141 lincRNA Interval_77711 chr17 94573710 94575157 + 0 NA Intergenic Intergenic -33752 ENSMUSG00000117476.1 ENSMUSG00000117476 ENSMUST00000234959 Gm9416 processed_pseudogene Interval_153 JH584299.1 309469 309819 + 0 NA NA NA NA NA Interval_71916 chr17 26994779 26996018 + 0 NA intron (ENSMUSG00000117819.1, intron 2 of 8) protein_coding-intron (ENSMUSG00000117819.1, intron 2 of 8) -16772 ENSMUSG00000118007.1 ENSMUSG00000118007 ENSMUST00000237254 Gm50254 antisense Interval_121541 chr5 3320319 3320585 + 0 NA Intergenic Intergenic 50133 ENSMUSG00000106658.1 ENSMUSG00000106658 ENSMUST00000197473 Gm36548 lincRNA Interval_99709 chr2 164428575 164428854 + 0 NA intron (ENSMUSG00000017009.3, intron 4 of 4) protein_coding-intron (ENSMUSG00000017009.3, intron 4 of 4) 15173 ENSMUSG00000017009.3 ENSMUSG00000017009 ENSMUST00000142909 Sdc4 protein_coding Interval_128860 chr5 115658463 115659100 + 0 NA intron (ENSMUSG00000041609.16, intron 6 of 8) protein_coding-intron (ENSMUSG00000041609.16, intron 6 of 8) -8987 ENSMUSG00000041609.16 ENSMUSG00000041609 ENSMUST00000148840 Bicdl1 protein_coding Interval_81080 chr18 53701522 53701994 + 0 NA intron (ENSMUSG00000048799.8, intron 18 of 19) protein_coding-intron (ENSMUSG00000048799.8, intron 18 of 20) 42805 ENSMUSG00000048799.8 ENSMUSG00000048799 ENSMUST00000235928 Cep120 protein_coding Interval_118515 chr4 132202242 132203257 + 0 NA intron (ENSMUSG00000040025.17, intron 3 of 3) protein_coding-intron (ENSMUSG00000040025.17, intron 3 of 3) 8060 ENSMUSG00000040025.17 ENSMUSG00000040025 ENSMUST00000102570 Ythdf2 protein_coding Interval_15227 chr10 43506758 43507637 + 0 NA intron (ENSMUSG00000038214.15, intron 3 of 3) protein_coding-intron (ENSMUSG00000038214.15, intron 3 of 4) -11374 ENSMUSG00000111368.1 ENSMUSG00000111368 ENSMUST00000216546 Gm47889 lincRNA Interval_173308 chrX 77723211 77723500 + 0 NA Intergenic Intergenic -5372 ENSMUSG00000081358.1 ENSMUSG00000081358 ENSMUST00000120309 Gm14746 processed_pseudogene Interval_121016 chr4 152230003 152230884 + 0 NA intron (ENSMUSG00000028937.14, intron 5 of 8) protein_coding-intron (ENSMUSG00000028937.14, intron 5 of 8) 26517 ENSMUSG00000085724.1 ENSMUSG00000085724 ENSMUST00000127752 Gm13096 sense_intronic Interval_22955 chr11 17944585 17944791 + 0 NA intron (ENSMUSG00000016984.7, intron 5 of 5) protein_coding-intron (ENSMUSG00000016984.7, intron 5 of 5) 9187 ENSMUSG00000016984.7 ENSMUSG00000016984 ENSMUST00000076661 Etaa1 protein_coding Interval_17666 chr10 78745952 78747859 + 0 NA promoter-TSS (ENSMUSG00000109776.1) processed_transcript-promoter-TSS (ENSMUSG00000109776.1) -225 ENSMUSG00000109776.1 ENSMUSG00000109776 ENSMUST00000209307 Gm30400 processed_transcript Interval_168380 chr9 79830566 79831658 + 0 NA promoter-TSS (ENSMUSG00000034898.17) protein_coding-promoter-TSS (ENSMUSG00000034898.17) 7275 ENSMUSG00000092565.1 ENSMUSG00000092565 ENSMUST00000174028 Gm20477 processed_pseudogene Interval_96705 chr2 127296242 127296464 + 0 NA TTS (ENSMUSG00000027367.16) protein_coding-TTS (ENSMUSG00000027367.16) 4242 ENSMUSG00000027367.16 ENSMUSG00000027367 ENSMUST00000154549 Stard7 protein_coding Interval_99095 chr2 157148145 157148938 + 0 NA intron (ENSMUSG00000027641.13, intron 21 of 21) protein_coding-intron (ENSMUSG00000027641.13, intron 21 of 21) -20279 ENSMUSG00000084113.1 ENSMUSG00000084113 ENSMUST00000121195 Gm14277 processed_pseudogene Interval_76353 chr17 79372175 79373749 + 0 NA Intergenic Intergenic 18263 ENSMUSG00000118651.1 ENSMUSG00000118651 ENSMUST00000239444 CT030740.1 antisense Interval_10349 chr1 169867412 169867834 + 0 NA Intergenic Intergenic 14075 ENSMUSG00000103110.1 ENSMUSG00000103110 ENSMUST00000193654 Gm37586 unprocessed_pseudogene Interval_119077 chr4 135385561 135385971 + 0 NA promoter-TSS (ENSMUSG00000043924.16) protein_coding-promoter-TSS (ENSMUSG00000043924.16) 8608 ENSMUSG00000084032.1 ENSMUSG00000084032 ENSMUST00000120561 Gm12991 processed_pseudogene Interval_132977 chr5 149066175 149066358 + 0 NA intron (ENSMUSG00000066551.12, intron 2 of 5) protein_coding-intron (ENSMUSG00000066551.12, intron 2 of 5) -50453 ENSMUSG00000085971.4 ENSMUSG00000085971 ENSMUST00000202128 Gm15411 processed_transcript Interval_65121 chr16 19888512 19889169 + 0 NA Intergenic Intergenic -4566 ENSMUSG00000075330.4 ENSMUSG00000075330 ENSMUST00000231564 A930003A15Rik protein_coding Interval_114292 chr4 71031355 71031689 + 0 NA Intergenic Intergenic -41151 ENSMUSG00000083549.1 ENSMUSG00000083549 ENSMUST00000119774 Gm11227 processed_pseudogene Interval_171838 chr9 121653125 121653946 + 0 NA intron (ENSMUSG00000032528.5, intron 1 of 3) protein_coding-intron (ENSMUSG00000032528.5, intron 1 of 12) 10774 ENSMUSG00000032528.5 ENSMUSG00000032528 ENSMUST00000149959 Vipr1 protein_coding Interval_51699 chr14 31486554 31486968 + 0 NA intron (ENSMUSG00000021891.8, intron 4 of 4) protein_coding-intron (ENSMUSG00000021891.8, intron 4 of 5) 6933 ENSMUSG00000021891.8 ENSMUSG00000021891 ENSMUST00000227852 Mettl6 protein_coding Interval_93537 chr2 73907288 73907842 + 0 NA TTS (ENSMUSG00000018770.9) protein_coding-TTS (ENSMUSG00000018770.9) 3726 ENSMUSG00000018770.9 ENSMUSG00000018770 ENSMUST00000155474 Atp5g3 protein_coding Interval_26275 chr11 55589214 55590324 + 0 NA intron (ENSMUSG00000000263.15, intron 1 of 8) protein_coding-intron (ENSMUSG00000000263.15, intron 1 of 8) 17964 ENSMUSG00000000263.15 ENSMUSG00000000263 ENSMUST00000102716 Glra1 protein_coding Interval_10745 chr1 173981015 173981457 + 0 NA intron (ENSMUSG00000026535.9, intron 1 of 6) protein_coding-intron (ENSMUSG00000026535.9, intron 1 of 6) 1508 ENSMUSG00000026535.9 ENSMUSG00000026535 ENSMUST00000000266 Ifi202b protein_coding Interval_27840 chr11 70351316 70352700 + 0 NA promoter-TSS (ENSMUSG00000018924.6) protein_coding-promoter-TSS (ENSMUSG00000018924.6) -6130 ENSMUSG00000082145.1 ENSMUSG00000082145 ENSMUST00000120351 Gm12312 processed_pseudogene Interval_121682 chr5 5237345 5237851 + 0 NA intron (ENSMUSG00000028926.15, intron 2 of 2) protein_coding-intron (ENSMUSG00000028926.15, intron 3 of 14) -62446 ENSMUSG00000105864.1 ENSMUSG00000105864 ENSMUST00000196372 Gm10484 sense_intronic Interval_169806 chr9 101861915 101862254 + 0 NA exon (ENSMUSG00000100807.2, exon 2 of 2) processed_transcript-exon (ENSMUSG00000100807.2, exon 2 of 2) 243 ENSMUSG00000057710.7 ENSMUSG00000057710 ENSMUST00000112841 9630041A04Rik protein_coding Interval_139660 chr6 106210249 106210545 + 0 NA intron (ENSMUSG00000064293.14, intron 3 of 3) protein_coding-intron (ENSMUSG00000064293.14, intron 2 of 15) -445106 ENSMUSG00000064293.14 ENSMUSG00000064293 ENSMUST00000142626 Cntn4 protein_coding Interval_120514 chr4 149085630 149085880 + 0 NA intron (ENSMUSG00000028975.16, intron 1 of 3) protein_coding-intron (ENSMUSG00000028975.16, intron 1 of 8) -10628 ENSMUSG00000081086.1 ENSMUSG00000081086 ENSMUST00000118516 Gm9506 processed_pseudogene Interval_1522 chr1 24701387 24701690 + 0 NA intron (ENSMUSG00000073725.8, intron 3 of 15) protein_coding-intron (ENSMUSG00000073725.8, intron 3 of 15) 22908 ENSMUSG00000073725.8 ENSMUSG00000073725 ENSMUST00000190195 Lmbrd1 protein_coding Interval_87821 chr19 56277104 56277810 + 0 NA TTS (ENSMUSG00000077223.1) snoRNA-TTS (ENSMUSG00000077223.1) 188 ENSMUSG00000077223.1 ENSMUSG00000077223 ENSMUST00000104035 Gm22271 snoRNA Interval_139888 chr6 112391068 112391420 + 0 NA Intergenic Intergenic 2573 ENSMUSG00000107541.1 ENSMUSG00000107541 ENSMUST00000203696 Gm44336 processed_pseudogene Interval_128532 chr5 113872564 113873950 + 0 NA intron (ENSMUSG00000004530.12, intron 2 of 2) protein_coding-intron (ENSMUSG00000004530.12, intron 2 of 10) 13096 ENSMUSG00000106623.1 ENSMUSG00000106623 ENSMUST00000198299 Gm43335 TEC Interval_84644 chr19 14623119 14623965 + 0 NA Intergenic Intergenic -28003 ENSMUSG00000024642.17 ENSMUSG00000024642 ENSMUST00000235975 Tle4 protein_coding Interval_93466 chr2 73277290 73279497 + 0 NA TTS (ENSMUSG00000068859.5) protein_coding-TTS (ENSMUSG00000068859.5) 6427 ENSMUSG00000068859.5 ENSMUSG00000068859 ENSMUST00000147133 Sp9 protein_coding Interval_55078 chr14 77773153 77773936 + 0 NA Intergenic Intergenic -7430 ENSMUSG00000115257.1 ENSMUSG00000115257 ENSMUST00000227970 Gm30467 lincRNA Interval_151794 chr7 126704196 126705221 + 0 NA promoter-TSS (ENSMUSG00000030707.15) protein_coding-promoter-TSS (ENSMUSG00000030707.15) -1534 ENSMUSG00000030707.15 ENSMUSG00000030707 ENSMUST00000126193 Coro1a protein_coding Interval_141076 chr6 124835386 124836028 + 0 NA exon (ENSMUSG00000023439.11, exon 9 of 10) protein_coding-exon (ENSMUSG00000023439.11, exon 9 of 10) 590 ENSMUSG00000023439.11 ENSMUSG00000023439 ENSMUST00000135996 Gnb3 protein_coding Interval_173654 chrX 101518296 101518609 + 0 NA promoter-TSS (ENSMUSG00000081674.1) processed_pseudogene-promoter-TSS (ENSMUSG00000081674.1) -533 ENSMUSG00000081674.1 ENSMUSG00000081674 ENSMUST00000120403 Gm6184 processed_pseudogene Interval_158816 chr8 86849309 86850063 + 0 NA intron (ENSMUSG00000031652.11, intron 1 of 2) protein_coding-intron (ENSMUSG00000031652.11, intron 4 of 6) 2734 ENSMUSG00000031652.11 ENSMUSG00000031652 ENSMUST00000210029 N4bp1 protein_coding Interval_31024 chr11 97773317 97773546 + 0 NA intron (ENSMUSG00000018543.8, intron 1 of 2) protein_coding-intron (ENSMUSG00000018543.8, intron 1 of 2) 2487 ENSMUSG00000018543.8 ENSMUSG00000018543 ENSMUST00000107576 1700001P01Rik protein_coding Interval_46541 chr13 66950763 66953500 + 0 NA intron (ENSMUSG00000021518.4, intron 1 of 8) protein_coding-intron (ENSMUSG00000021518.4, intron 2 of 12) 6808 ENSMUSG00000021518.4 ENSMUSG00000021518 ENSMUST00000224175 Ptdss1 protein_coding Interval_32246 chr11 106466691 106466959 + 0 NA intron (ENSMUSG00000020715.9, intron 1 of 14) protein_coding-intron (ENSMUSG00000020715.9, intron 1 of 21) 21027 ENSMUSG00000020715.9 ENSMUSG00000020715 ENSMUST00000106799 Ern1 protein_coding Interval_94338 chr2 89648531 89648809 + 0 NA Intergenic Intergenic 12797 ENSMUSG00000075078.5 ENSMUSG00000075078 ENSMUST00000099768 Olfr1250 protein_coding Interval_12650 chr10 4144778 4146491 + 0 NA intron (ENSMUSG00000040675.17, intron 26 of 27) protein_coding-intron (ENSMUSG00000040675.17, intron 26 of 27) -24253 ENSMUSG00000089473.1 ENSMUSG00000089473 ENSMUST00000158848 Gm25369 snoRNA Interval_135245 chr6 37806003 37807238 + 0 NA TTS (ENSMUSG00000080242.5) processed_pseudogene-TTS (ENSMUSG00000080242.5) 534 ENSMUSG00000080242.5 ENSMUSG00000080242 ENSMUST00000122373 Atp6v0c-ps2 processed_pseudogene Interval_66114 chr16 31727862 31728144 + 0 NA intron (ENSMUSG00000022770.17, intron 1 of 2) protein_coding-intron (ENSMUSG00000022770.17, intron 4 of 24) 19339 ENSMUSG00000089011.1 ENSMUSG00000089011 ENSMUST00000158386 Gm24879 snoRNA Interval_156880 chr8 61406880 61407505 + 0 NA Intergenic Intergenic -25805 ENSMUSG00000109610.1 ENSMUSG00000109610 ENSMUST00000210343 Gm7432 processed_pseudogene Interval_82579 chr18 75272807 75273448 + 0 NA intron (ENSMUSG00000035765.10, intron 16 of 16) protein_coding-intron (ENSMUSG00000035765.10, intron 16 of 16) 24190 ENSMUSG00000102047.1 ENSMUSG00000102047 ENSMUST00000186356 2010010A06Rik transcribed_processed_pseudogene Interval_49919 chr13 118259411 118260110 + 0 NA Intergenic Intergenic -126870 ENSMUSG00000097411.2 ENSMUSG00000097411 ENSMUST00000181168 B430218F22Rik antisense Interval_172895 chrX 52961157 52962283 + 0 NA Intergenic Intergenic -26417 ENSMUSG00000025630.8 ENSMUSG00000025630 ENSMUST00000026723 Hprt protein_coding Interval_165770 chr9 52384642 52385621 + 0 NA Intergenic Intergenic 16837 ENSMUSG00000111780.1 ENSMUSG00000111780 ENSMUST00000216696 Gm47960 lincRNA Interval_90577 chr2 31228443 31229477 + 0 NA Intergenic Intergenic -17206 ENSMUSG00000062661.6 ENSMUSG00000062661 ENSMUST00000150670 Ncs1 protein_coding Interval_73158 chr17 35156772 35157072 + 0 NA TTS (ENSMUSG00000024393.14) protein_coding-TTS (ENSMUSG00000024393.14) 5774 ENSMUSG00000064853.1 ENSMUSG00000064853 ENSMUST00000082919 Gm23442 snoRNA Interval_123968 chr5 36915220 36915672 + 0 NA intron (ENSMUSG00000029120.10, intron 1 of 3) protein_coding-intron (ENSMUSG00000029120.10, intron 1 of 8) 5332 ENSMUSG00000106934.1 ENSMUSG00000106934 ENSMUST00000202009 Gm42506 TEC Interval_108059 chr3 121253943 121254740 + 0 NA intron (ENSMUSG00000028132.15, intron 2 of 10) protein_coding-intron (ENSMUSG00000028132.15, intron 1 of 7) -3604 ENSMUSG00000106619.1 ENSMUSG00000106619 ENSMUST00000200472 Gm9353 processed_pseudogene Interval_99855 chr2 165349564 165349771 + 0 NA Intergenic Intergenic 19056 ENSMUSG00000056824.15 ENSMUSG00000056824 ENSMUST00000141140 Zfp663 protein_coding Interval_61789 chr15 84171127 84171711 + 0 NA intron (ENSMUSG00000041653.5, intron 2 of 7) protein_coding-intron (ENSMUSG00000041653.5, intron 2 of 7) 3149 ENSMUSG00000098882.1 ENSMUSG00000098882 ENSMUST00000184924 Mir6392 miRNA Interval_116825 chr4 117493949 117497202 + 0 NA promoter-TSS (ENSMUSG00000028677.19) protein_coding-promoter-TSS (ENSMUSG00000028677.19) -877 ENSMUSG00000087228.1 ENSMUSG00000087228 ENSMUST00000132690 Gm12827 lincRNA Interval_168058 chr9 75701049 75702703 + 0 NA Intergenic Intergenic -7217 ENSMUSG00000098232.1 ENSMUSG00000098232 ENSMUST00000182463 Gm3671 processed_pseudogene Interval_21028 chr10 123812134 123813488 + 0 NA Intergenic Intergenic 79087 ENSMUSG00000112603.1 ENSMUSG00000112603 ENSMUST00000219335 Gm18510 processed_pseudogene Interval_41765 chr12 118854747 118856654 + 0 NA Intergenic Intergenic 8114 ENSMUSG00000048562.7 ENSMUSG00000048562 ENSMUST00000223305 Sp8 protein_coding Interval_83452 chr18 85688960 85689164 + 0 NA Intergenic Intergenic 27663 ENSMUSG00000117854.1 ENSMUSG00000117854 ENSMUST00000237113 Gm7612 processed_pseudogene Interval_106874 chr3 101447146 101447651 + 0 NA intron (ENSMUSG00000042035.11, intron 7 of 10) protein_coding-intron (ENSMUSG00000042035.11, intron 7 of 10) -21745 ENSMUSG00000106137.1 ENSMUSG00000106137 ENSMUST00000196233 Gm42538 antisense Interval_162744 chr9 8264161 8264364 + 0 NA Intergenic Intergenic 17476 ENSMUSG00000084747.1 ENSMUSG00000084747 ENSMUST00000122798 Mir1899 miRNA Interval_56697 chr14 121445207 121445885 + 0 NA Intergenic Intergenic 10216 ENSMUSG00000115123.1 ENSMUSG00000115123 ENSMUST00000227451 Gm33299 lincRNA Interval_100086 chr2 166995460 166996934 + 0 NA promoter-TSS (ENSMUSG00000039536.16) protein_coding-promoter-TSS (ENSMUSG00000039536.16) 12842 ENSMUSG00000082665.1 ENSMUSG00000082665 ENSMUST00000118868 Gm11470 processed_pseudogene Interval_102086 chr3 16887943 16889931 + 0 NA Intergenic Intergenic -65625 ENSMUSG00000088644.1 ENSMUSG00000088644 ENSMUST00000158019 Gm26485 snRNA Interval_11132 chr1 179562687 179563217 + 0 NA intron (ENSMUSG00000038949.8, intron 1 of 3) protein_coding-intron (ENSMUSG00000038949.8, intron 1 of 10) 16443 ENSMUSG00000038949.8 ENSMUSG00000038949 ENSMUST00000143270 Cnst protein_coding Interval_117661 chr4 125414088 125415969 + 0 NA Intergenic Intergenic -75672 ENSMUSG00000001985.9 ENSMUSG00000001985 ENSMUST00000030676 Grik3 protein_coding Interval_97143 chr2 131727441 131727688 + 0 NA Intergenic Intergenic -5726 ENSMUSG00000086831.1 ENSMUSG00000086831 ENSMUST00000138080 Gm14280 antisense Interval_116500 chr4 114784444 114785081 + 0 NA Intergenic Intergenic -36960 ENSMUSG00000055198.3 ENSMUSG00000055198 ENSMUST00000137570 Gm12830 protein_coding Interval_77648 chr17 93547300 93547799 + 0 NA Intergenic Intergenic 133116 ENSMUSG00000117514.1 ENSMUSG00000117514 ENSMUST00000234106 Gm50002 processed_pseudogene Interval_17433 chr10 76622824 76624139 + 0 NA promoter-TSS (ENSMUSG00000020241.13) protein_coding-promoter-TSS (ENSMUSG00000020241.13) -156 ENSMUSG00000020241.13 ENSMUSG00000020241 ENSMUST00000137365 Col6a2 protein_coding Interval_61781 chr15 84097354 84098217 + 0 NA intron (ENSMUSG00000018865.9, intron 1 of 7) protein_coding-intron (ENSMUSG00000018865.9, intron 1 of 6) 7824 ENSMUSG00000018865.9 ENSMUSG00000018865 ENSMUST00000229826 Sult4a1 protein_coding Interval_159454 chr8 94829798 94830570 + 0 NA intron (ENSMUSG00000031781.14, intron 1 of 6) protein_coding-intron (ENSMUSG00000031781.14, intron 3 of 8) -5533 ENSMUSG00000090188.1 ENSMUSG00000090188 ENSMUST00000162120 Gm7418 processed_pseudogene Interval_38693 chr12 81104647 81104936 + 0 NA intron (ENSMUSG00000021136.13, intron 2 of 11) protein_coding-intron (ENSMUSG00000021136.13, intron 2 of 12) -61360 ENSMUSG00000092673.1 ENSMUSG00000092673 ENSMUST00000174932 Mir3067 miRNA Interval_42967 chr13 21959008 21960304 + 0 NA TTS (ENSMUSG00000006720.16) protein_coding-TTS (ENSMUSG00000006720.16) -1533 ENSMUSG00000081265.1 ENSMUSG00000081265 ENSMUST00000119018 Gm11282 processed_pseudogene Interval_44708 chr13 47335403 47337621 + 0 NA intron (ENSMUSG00000114958.1, intron 2 of 3) lincRNA-intron (ENSMUSG00000114958.1, intron 2 of 3) 4427 ENSMUSG00000114958.1 ENSMUSG00000114958 ENSMUST00000224746 Gm48612 lincRNA Interval_142985 chr6 148046866 148048375 + 0 NA promoter-TSS (ENSMUSG00000086777.3) antisense-promoter-TSS (ENSMUSG00000086777.3) 205 ENSMUSG00000030303.15 ENSMUSG00000030303 ENSMUST00000111607 Far2 protein_coding Interval_20811 chr10 121206234 121206752 + 0 NA Intergenic Intergenic -3844 ENSMUSG00000112846.1 ENSMUSG00000112846 ENSMUST00000219710 4930432O09Rik lincRNA Interval_84021 chr19 6164088 6164554 + 0 NA promoter-TSS (ENSMUSG00000039699.14) protein_coding-promoter-TSS (ENSMUSG00000039699.14) -119 ENSMUSG00000039699.14 ENSMUSG00000039699 ENSMUST00000141858 Batf2 protein_coding Interval_65682 chr16 25190717 25191517 + 0 NA Intergenic Intergenic -95704 ENSMUSG00000048399.4 ENSMUSG00000048399 ENSMUST00000128595 Tprg protein_coding Interval_71866 chr17 26610879 26611710 + 0 NA intron (ENSMUSG00000001576.15, intron 2 of 11) protein_coding-intron (ENSMUSG00000001576.15, intron 3 of 8) 9070 ENSMUSG00000001576.15 ENSMUSG00000001576 ENSMUST00000236163 Ergic1 protein_coding Interval_48790 chr13 103318307 103318622 + 0 NA intron (ENSMUSG00000034751.17, intron 1 of 3) protein_coding-intron (ENSMUSG00000034751.17, intron 1 of 4) -37788 ENSMUSG00000047643.5 ENSMUSG00000047643 ENSMUST00000052030 Gm5454 processed_pseudogene Interval_6668 chr1 118645494 118646085 + 0 NA intron (ENSMUSG00000026380.10, intron 2 of 14) protein_coding-intron (ENSMUSG00000026380.10, intron 2 of 14) 6006 ENSMUSG00000101624.1 ENSMUSG00000101624 ENSMUST00000185504 Gm28882 processed_pseudogene Interval_125692 chr5 73292355 73293495 + 0 NA promoter-TSS (ENSMUSG00000029152.13) protein_coding-promoter-TSS (ENSMUSG00000029152.13) 118 ENSMUSG00000029152.13 ENSMUSG00000029152 ENSMUST00000201191 Ociad1 protein_coding Interval_87302 chr19 47488206 47488548 + 0 NA Intergenic Intergenic -24605 ENSMUSG00000097990.1 ENSMUSG00000097990 ENSMUST00000182109 Gm19557 antisense Interval_138908 chr6 93375846 93377783 + 0 NA Intergenic Intergenic -41226 ENSMUSG00000077180.1 ENSMUSG00000077180 ENSMUST00000103992 Gm25094 snoRNA Interval_111338 chr4 19351188 19351711 + 0 NA intron (ENSMUSG00000056494.7, intron 3 of 17) protein_coding-intron (ENSMUSG00000056494.7, intron 3 of 17) 53116 ENSMUSG00000082320.1 ENSMUSG00000082320 ENSMUST00000118921 Gm11877 processed_pseudogene Interval_46991 chr13 73987863 73988072 + 0 NA TTS (ENSMUSG00000113923.1) processed_pseudogene-TTS (ENSMUSG00000113923.1) 1166 ENSMUSG00000113923.1 ENSMUSG00000113923 ENSMUST00000221732 Gm10126 processed_pseudogene Interval_167953 chr9 74906901 74907214 + 0 NA Intergenic Intergenic 40573 ENSMUSG00000043013.10 ENSMUSG00000043013 ENSMUST00000160499 Onecut1 protein_coding Interval_127040 chr5 99875464 99875723 + 0 NA Intergenic Intergenic 5345 ENSMUSG00000084445.1 ENSMUSG00000084445 ENSMUST00000122496 Gm26252 snoRNA Interval_83507 chr18 88490554 88490861 + 0 NA Intergenic Intergenic -75667 ENSMUSG00000117830.1 ENSMUSG00000117830 ENSMUST00000235625 Gm50400 processed_pseudogene Interval_98049 chr2 147186961 147188108 + 0 NA intron (ENSMUSG00000053545.6, intron 1 of 2) protein_coding-intron (ENSMUSG00000027434.11, intron 1 of 1) 110 ENSMUSG00000053545.6 ENSMUSG00000053545 ENSMUST00000144411 6430503K07Rik antisense Interval_112640 chr4 43738966 43739591 + 0 NA intron (ENSMUSG00000028475.9, intron 2 of 5) protein_coding-intron (ENSMUSG00000028475.9, intron 2 of 5) 7019 ENSMUSG00000028475.9 ENSMUSG00000028475 ENSMUST00000142309 Spaar protein_coding Interval_64294 chr16 10297441 10297636 + 0 NA intron (ENSMUSG00000022505.9, intron 1 of 4) protein_coding-intron (ENSMUSG00000022505.9, intron 1 of 4) 16333 ENSMUSG00000022505.9 ENSMUSG00000022505 ENSMUST00000230141 Emp2 protein_coding Interval_73600 chr17 40958886 40959129 + 0 NA TTS (ENSMUSG00000023921.9) protein_coding-TTS (ENSMUSG00000023921.9) 3819 ENSMUSG00000023921.9 ENSMUSG00000023921 ENSMUST00000233222 Mmut protein_coding Interval_101476 chr2 181670224 181671864 + 0 NA intron (ENSMUSG00000046470.5, intron 1 of 1) protein_coding-intron (ENSMUSG00000046470.5, intron 1 of 1) 596 ENSMUSG00000046470.5 ENSMUSG00000046470 ENSMUST00000054491 Sox18 protein_coding Interval_32340 chr11 107057499 107057689 + 0 NA intron (ENSMUSG00000040481.17, intron 21 of 29) protein_coding-intron (ENSMUSG00000040481.17, intron 19 of 27) -10251 ENSMUSG00000040481.17 ENSMUSG00000040481 ENSMUST00000149486 Bptf protein_coding Interval_133655 chr6 8118866 8119636 + 0 NA intron (ENSMUSG00000068794.7, intron 13 of 34) protein_coding-intron (ENSMUSG00000068794.7, intron 13 of 34) 60923 ENSMUSG00000068794.7 ENSMUSG00000068794 ENSMUST00000213284 Col28a1 protein_coding Interval_151771 chr7 126549636 126549950 + 0 NA intron (ENSMUSG00000030738.11, intron 16 of 20) protein_coding-intron (ENSMUSG00000030738.11, intron 16 of 20) 14187 ENSMUSG00000084453.1 ENSMUSG00000084453 ENSMUST00000122504 Gm24596 snRNA Interval_173906 chrX 109001415 109001724 + 0 NA promoter-TSS (ENSMUSG00000081793.1) processed_pseudogene-promoter-TSS (ENSMUSG00000081793.1) 84 ENSMUSG00000081793.1 ENSMUSG00000081793 ENSMUST00000120648 5730416F02Rik processed_pseudogene Interval_56757 chr14 121878111 121879249 + 0 NA promoter-TSS (ENSMUSG00000041765.6) protein_coding-promoter-TSS (ENSMUSG00000041765.6) -176 ENSMUSG00000102112.1 ENSMUSG00000102112 ENSMUST00000185880 1810041H14Rik antisense Interval_46321 chr13 63930225 63931029 + 0 NA Intergenic Intergenic 15894 ENSMUSG00000113340.1 ENSMUSG00000113340 ENSMUST00000220900 Gm7695 processed_pseudogene Interval_115397 chr4 98599513 98600675 + 0 NA intron (ENSMUSG00000061859.17, intron 29 of 44) protein_coding-intron (ENSMUSG00000061859.17, intron 3 of 15) -42229 ENSMUSG00000094456.1 ENSMUSG00000094456 ENSMUST00000175382 Gm22625 miRNA Interval_55528 chr14 90812990 90813370 + 0 NA Intergenic Intergenic 93626 ENSMUSG00000115565.1 ENSMUSG00000115565 ENSMUST00000226394 Gm18082 processed_pseudogene Interval_12896 chr10 7841438 7842338 + 0 NA intron (ENSMUSG00000039981.6, intron 2 of 5) protein_coding-intron (ENSMUSG00000039981.6, intron 2 of 5) 5507 ENSMUSG00000093060.1 ENSMUSG00000093060 ENSMUST00000175319 Mir5104 miRNA Interval_170995 chr9 113589486 113590852 + 0 NA intron (ENSMUSG00000109890.2, intron 1 of 4) lincRNA-intron (ENSMUSG00000109890.2, intron 1 of 4) 51885 ENSMUSG00000111364.1 ENSMUSG00000111364 ENSMUST00000213455 Gm36745 lincRNA Interval_64606 chr16 13637987 13638509 + 0 NA intron (ENSMUSG00000022685.9, intron 14 of 23) protein_coding-intron (ENSMUSG00000022685.9, intron 13 of 23) 29890 ENSMUSG00000022685.9 ENSMUSG00000022685 ENSMUST00000229251 Parn protein_coding Interval_163443 chr9 21462740 21464074 + 0 NA intron (ENSMUSG00000033335.17, intron 2 of 19) protein_coding-intron (ENSMUSG00000033335.17, intron 2 of 20) 33157 ENSMUSG00000065547.1 ENSMUSG00000065547 ENSMUST00000083613 Mir199a-1 miRNA Interval_75719 chr17 70843303 70843961 + 0 NA TTS (ENSMUSG00000047407.17) protein_coding-TTS (ENSMUSG00000047407.17) 6182 ENSMUSG00000047407.17 ENSMUSG00000047407 ENSMUST00000125329 Tgif1 protein_coding Interval_33488 chr11 116840727 116841214 + 0 NA exon (ENSMUSG00000056962.11, exon 3 of 3) protein_coding-exon (ENSMUSG00000056962.11, exon 3 of 3) -1004 ENSMUSG00000098792.1 ENSMUSG00000098792 ENSMUST00000184052 Gm27401 misc_RNA Interval_84023 chr19 6166882 6167320 + 0 NA intron (ENSMUSG00000039699.14, intron 2 of 2) protein_coding-intron (ENSMUSG00000039699.14, intron 2 of 2) 2661 ENSMUSG00000039699.14 ENSMUSG00000039699 ENSMUST00000141858 Batf2 protein_coding Interval_47358 chr13 81806979 81807192 + 0 NA Intergenic Intergenic 22698 ENSMUSG00000021537.9 ENSMUSG00000021537 ENSMUST00000224168 Cetn3 protein_coding Interval_84583 chr19 13684348 13684749 + 0 NA Intergenic Intergenic -12724 ENSMUSG00000051156.2 ENSMUSG00000051156 ENSMUST00000052737 Olfr1491 protein_coding Interval_69421 chr16 93158665 93159289 + 0 NA Intergenic Intergenic 86222 ENSMUSG00000098983.1 ENSMUSG00000098983 ENSMUST00000184529 Gm28003 miRNA Interval_150102 chr7 106472126 106472562 + 0 NA Intergenic Intergenic 35384 ENSMUSG00000063286.7 ENSMUSG00000063286 ENSMUST00000184842 Gm8995 transcribed_unprocessed_pseudogene Interval_82802 chr18 77124595 77125102 + 0 NA intron (ENSMUSG00000025423.16, intron 6 of 14) protein_coding-intron (ENSMUSG00000025423.16, intron 5 of 12) 59603 ENSMUSG00000025423.16 ENSMUSG00000025423 ENSMUST00000168882 Pias2 protein_coding Interval_143337 chr7 5853359 5854139 + 0 NA Intergenic Intergenic 30793 ENSMUSG00000118388.1 ENSMUSG00000118388 ENSMUST00000078475 Vmn1r64 protein_coding Interval_107072 chr3 103305655 103306390 + 0 NA intron (ENSMUSG00000033014.12, intron 1 of 18) protein_coding-intron (ENSMUSG00000033014.12, intron 1 of 19) -20064 ENSMUSG00000033014.12 ENSMUSG00000033014 ENSMUST00000197365 Trim33 protein_coding Interval_83760 chr19 4433361 4434513 + 0 NA intron (ENSMUSG00000041845.11, intron 1 of 4) protein_coding-intron (ENSMUSG00000041845.11, intron 1 of 4) -5386 ENSMUSG00000087132.8 ENSMUSG00000087132 ENSMUST00000136632 A930001C03Rik processed_transcript Interval_135118 chr6 35623038 35623244 + 0 NA Intergenic Intergenic -7472 ENSMUSG00000107110.1 ENSMUSG00000107110 ENSMUST00000201009 Gm42931 lincRNA Interval_141891 chr6 135171915 135172150 + 0 NA promoter-TSS (ENSMUSG00000108248.1) processed_pseudogene-promoter-TSS (ENSMUSG00000108248.1) 73 ENSMUSG00000108248.1 ENSMUSG00000108248 ENSMUST00000203706 Gm34391 processed_pseudogene Interval_157417 chr8 70228087 70229070 + 0 NA intron (ENSMUSG00000002343.11, intron 3 of 3) protein_coding-intron (ENSMUSG00000002343.11, intron 3 of 7) -3401 ENSMUSG00000002343.11 ENSMUSG00000002343 ENSMUST00000130319 Armc6 protein_coding Interval_133217 chr5 150632372 150632639 + 0 NA intron (ENSMUSG00000029655.17, intron 3 of 3) protein_coding-intron (ENSMUSG00000029655.17, intron 3 of 3) -25622 ENSMUSG00000107096.3 ENSMUSG00000107096 ENSMUST00000202860 Gm43597 lincRNA Interval_145781 chr7 38242163 38243257 + 0 NA Intergenic Intergenic -14694 ENSMUSG00000074170.5 ENSMUSG00000074170 ENSMUST00000098513 Plekhf1 protein_coding Interval_81705 chr18 63732307 63732937 + 0 NA intron (ENSMUSG00000040560.10, intron 7 of 19) protein_coding-intron (ENSMUSG00000040560.10, intron 7 of 27) -6442 ENSMUSG00000040560.10 ENSMUSG00000040560 ENSMUST00000235428 Wdr7 protein_coding Interval_151259 chr7 120369999 120370679 + 0 NA intron (ENSMUSG00000054746.18, intron 17 of 30) protein_coding-intron (ENSMUSG00000054746.18, intron 17 of 30) 41669 ENSMUSG00000054746.18 ENSMUSG00000054746 ENSMUST00000076272 Abca15 protein_coding Interval_83238 chr18 82933259 82934307 + 0 NA intron (ENSMUSG00000058881.13, intron 1 of 1) protein_coding-intron (ENSMUSG00000058881.13, intron 1 of 5) -13223 ENSMUSG00000118339.1 ENSMUSG00000118339 ENSMUST00000237056 4930592I03Rik processed_transcript Interval_101850 chr3 10011689 10013336 + 0 NA promoter-TSS (ENSMUSG00000027533.10) protein_coding-promoter-TSS (ENSMUSG00000027533.10) -93 ENSMUSG00000027533.10 ENSMUSG00000027533 ENSMUST00000123744 Fabp5 protein_coding Interval_136146 chr6 51505786 51505993 + 0 NA Intergenic Intergenic 28431 ENSMUSG00000029836.15 ENSMUSG00000029836 ENSMUST00000203404 Cbx3 protein_coding Interval_163643 chr9 23019270 23019774 + 0 NA Intergenic Intergenic -203764 ENSMUSG00000031963.8 ENSMUSG00000031963 ENSMUST00000214050 Bmper protein_coding Interval_135741 chr6 46208793 46209018 + 0 NA intron (ENSMUSG00000039419.17, intron 1 of 4) protein_coding-intron (ENSMUSG00000039419.17, intron 9 of 23) 74803 ENSMUSG00000107712.1 ENSMUSG00000107712 ENSMUST00000205102 Gm43870 TEC Interval_37451 chr12 69085660 69086008 + 0 NA Intergenic Intergenic 34513 ENSMUSG00000113716.1 ENSMUSG00000113716 ENSMUST00000222118 Gm47518 lincRNA Interval_152789 chr7 137584974 137585662 + 0 NA Intergenic Intergenic -20730 ENSMUSG00000109973.1 ENSMUSG00000109973 ENSMUST00000209816 Gm45397 lincRNA Interval_170375 chr9 107546996 107547511 + 0 NA promoter-TSS (ENSMUSG00000010044.12) protein_coding-promoter-TSS (ENSMUSG00000010044.12) -51 ENSMUSG00000010044.12 ENSMUSG00000010044 ENSMUST00000192445 Zmynd10 protein_coding Interval_170198 chr9 106141303 106142240 + 0 NA Intergenic Intergenic -12353 ENSMUSG00000065407.1 ENSMUSG00000065407 ENSMUST00000083473 Mir135a-1 miRNA Interval_13024 chr10 9575360 9576033 + 0 NA Intergenic Intergenic 9320 ENSMUSG00000112700.1 ENSMUSG00000112700 ENSMUST00000218493 Gm48757 lincRNA Interval_142628 chr6 144387361 144387621 + 0 NA intron (ENSMUSG00000041540.16, intron 4 of 6) protein_coding-intron (ENSMUSG00000041540.16, intron 4 of 13) -93734 ENSMUSG00000087157.1 ENSMUSG00000087157 ENSMUST00000156443 Sox5os2 antisense Interval_63267 chr15 100017431 100018922 + 0 NA Intergenic Intergenic -44889 ENSMUSG00000100084.2 ENSMUSG00000100084 ENSMUST00000188271 2310068J16Rik antisense Interval_95220 chr2 104878741 104879682 + 0 NA intron (ENSMUSG00000045106.12, intron 1 of 7) protein_coding-intron (ENSMUSG00000045106.12, intron 1 of 7) 4009 ENSMUSG00000082934.1 ENSMUSG00000082934 ENSMUST00000119009 Gm13887 processed_pseudogene Interval_85213 chr19 23858323 23858885 + 0 NA intron (ENSMUSG00000024897.9, intron 1 of 12) protein_coding-intron (ENSMUSG00000024897.9, intron 1 of 12) -45853 ENSMUSG00000024897.9 ENSMUSG00000024897 ENSMUST00000237688 Apba1 protein_coding Interval_100309 chr2 168310811 168311676 + 0 NA Intergenic Intergenic -16122 ENSMUSG00000086783.1 ENSMUSG00000086783 ENSMUST00000148309 Gm14262 lincRNA Interval_139710 chr6 107791893 107792154 + 0 NA Intergenic Intergenic -89050 ENSMUSG00000107475.1 ENSMUSG00000107475 ENSMUST00000204520 Gm19177 processed_pseudogene Interval_45395 chr13 54851196 54851743 + 0 NA Intergenic Intergenic -10565 ENSMUSG00000086097.1 ENSMUSG00000086097 ENSMUST00000148974 Gm16250 processed_pseudogene Interval_86530 chr19 41482250 41483807 + 0 NA promoter-TSS (ENSMUSG00000025019.17) protein_coding-promoter-TSS (ENSMUSG00000025019.17) 23215 ENSMUSG00000044065.3 ENSMUSG00000044065 ENSMUST00000057038 Gm9788 processed_pseudogene Interval_49216 chr13 109546725 109548753 + 0 NA intron (ENSMUSG00000021699.17, intron 1 of 14) protein_coding-intron (ENSMUSG00000021699.17, intron 1 of 14) 222995 ENSMUSG00000076946.2 ENSMUSG00000076946 ENSMUST00000103758 Mir582 miRNA Interval_142512 chr6 142988770 142989780 + 0 NA promoter-TSS (ENSMUSG00000107839.1) lincRNA-promoter-TSS (ENSMUSG00000107839.1) -335 ENSMUSG00000107839.1 ENSMUSG00000107839 ENSMUST00000203259 4930434O05Rik lincRNA Interval_107181 chr3 104398354 104398752 + 0 NA intron (ENSMUSG00000032913.13, intron 1 of 1) protein_coding-intron (ENSMUSG00000032913.13, intron 1 of 1) -10608 ENSMUSG00000104768.1 ENSMUSG00000104768 ENSMUST00000199205 Gm38412 antisense Interval_32537 chr11 108245589 108246184 + 0 NA intron (ENSMUSG00000050965.14, intron 2 of 2) protein_coding-intron (ENSMUSG00000050965.14, intron 2 of 16) 64036 ENSMUSG00000084978.1 ENSMUSG00000084978 ENSMUST00000153899 Gm11655 antisense Interval_30293 chr11 93097194 93100436 + 0 NA promoter-TSS (ENSMUSG00000056158.14) protein_coding-promoter-TSS (ENSMUSG00000056158.14) 787 ENSMUSG00000056158.14 ENSMUSG00000056158 ENSMUST00000107863 Car10 protein_coding Interval_106948 chr3 102131613 102131813 + 0 NA TTS (ENSMUSG00000105342.1) sense_intronic-TTS (ENSMUSG00000105342.1) 1775 ENSMUSG00000105342.1 ENSMUSG00000105342 ENSMUST00000196994 Gm43244 sense_intronic Interval_131405 chr5 136966390 136966635 + 0 NA promoter-TSS (ENSMUSG00000001739.14) protein_coding-promoter-TSS (ENSMUSG00000001739.14) 3667 ENSMUSG00000019054.13 ENSMUSG00000019054 ENSMUST00000152658 Fis1 protein_coding Interval_16883 chr10 69464301 69464611 + 0 NA intron (ENSMUSG00000069601.14, intron 1 of 1) protein_coding-intron (ENSMUSG00000069601.14, intron 1 of 1) -40708 ENSMUSG00000111899.1 ENSMUSG00000111899 ENSMUST00000218846 Gm18636 processed_pseudogene Interval_139732 chr6 108228746 108230054 + 0 NA intron (ENSMUSG00000030102.11, intron 2 of 61) protein_coding-intron (ENSMUSG00000030102.11, intron 2 of 61) -43844 ENSMUSG00000030101.15 ENSMUSG00000030101 ENSMUST00000171697 Sumf1 protein_coding Interval_106834 chr3 101212180 101213560 + 0 NA Intergenic Intergenic -5471 ENSMUSG00000082415.1 ENSMUSG00000082415 ENSMUST00000120887 Gm12486 processed_pseudogene Interval_52053 chr14 34891747 34892844 + 0 NA intron (ENSMUSG00000041078.7, intron 2 of 15) protein_coding-intron (ENSMUSG00000041078.7, intron 2 of 15) -2314 ENSMUSG00000065481.1 ENSMUSG00000065481 ENSMUST00000083547 Mir346 miRNA Interval_36378 chr12 42816128 42816339 + 0 NA Intergenic Intergenic 199226 ENSMUSG00000112407.1 ENSMUSG00000112407 ENSMUST00000219475 Gm33340 lincRNA Interval_78995 chr18 23787428 23787633 + 0 NA intron (ENSMUSG00000024277.14, intron 2 of 7) protein_coding-intron (ENSMUSG00000024277.14, intron 2 of 7) -12541 ENSMUSG00000098607.1 ENSMUSG00000098607 ENSMUST00000184278 Mir6360 miRNA Interval_70357 chr17 8949121 8949813 + 0 NA exon (ENSMUSG00000023868.17, exon 11 of 22) protein_coding-exon (ENSMUSG00000023868.17, exon 11 of 22) -38875 ENSMUSG00000023873.13 ENSMUSG00000023873 ENSMUST00000136954 1700010I14Rik protein_coding Interval_28287 chr11 74908233 74911230 + 0 NA TTS (ENSMUSG00000038335.13) protein_coding-TTS (ENSMUSG00000038335.13) 3622 ENSMUSG00000077637.1 ENSMUSG00000077637 ENSMUST00000104449 Gm22771 snoRNA Interval_18404 chr10 85561372 85562004 + 0 NA exon (ENSMUSG00000020042.15, exon 3 of 10) protein_coding-exon (ENSMUSG00000020042.15, exon 3 of 10) -83515 ENSMUSG00000020042.15 ENSMUSG00000020042 ENSMUST00000145433 Btbd11 protein_coding Interval_34600 chr12 7299378 7299678 + 0 NA Intergenic Intergenic 80802 ENSMUSG00000102096.1 ENSMUSG00000102096 ENSMUST00000187396 1700101O22Rik lincRNA Interval_139151 chr6 96335856 96336104 + 0 NA intron (ENSMUSG00000059187.12, intron 2 of 4) protein_coding-intron (ENSMUSG00000059187.12, intron 1 of 3) 133551 ENSMUSG00000065239.1 ENSMUSG00000065239 ENSMUST00000083305 Gm22971 snRNA Interval_60261 chr15 71240916 71241198 + 0 NA Intergenic Intergenic -68777 ENSMUSG00000116355.1 ENSMUSG00000116355 ENSMUST00000229873 Gm5217 processed_pseudogene Interval_68607 chr16 81109518 81109688 + 0 NA Intergenic Intergenic 152412 ENSMUSG00000084671.1 ENSMUSG00000084671 ENSMUST00000122722 Gm26023 misc_RNA Interval_89226 chr2 18190910 18192493 + 0 NA intron (ENSMUSG00000026743.16, intron 14 of 22) protein_coding-intron (ENSMUSG00000026743.16, intron 14 of 22) -12259 ENSMUSG00000081619.1 ENSMUSG00000081619 ENSMUST00000118087 Gm13351 processed_pseudogene Interval_90901 chr2 33356549 33357790 + 0 NA intron (ENSMUSG00000038831.16, intron 1 of 18) protein_coding-intron (ENSMUSG00000038831.16, intron 1 of 16) 5877 ENSMUSG00000093138.1 ENSMUSG00000093138 ENSMUST00000175397 Gm25998 miRNA Interval_90931 chr2 33558071 33558681 + 0 NA Intergenic Intergenic -56022 ENSMUSG00000104403.1 ENSMUSG00000104403 ENSMUST00000193312 Gm38011 TEC Interval_97647 chr2 141914742 141914929 + 0 NA intron (ENSMUSG00000068205.14, intron 3 of 13) protein_coding-intron (ENSMUSG00000068205.14, intron 8 of 17) 76046 ENSMUSG00000082412.1 ENSMUSG00000082412 ENSMUST00000119675 Fau-ps1 processed_pseudogene Interval_101230 chr2 179652624 179653002 + 0 NA intron (ENSMUSG00000000305.12, intron 2 of 2) protein_coding-intron (ENSMUSG00000000305.12, intron 2 of 15) -39246 ENSMUSG00000083410.1 ENSMUSG00000083410 ENSMUST00000120800 Gm14300 processed_pseudogene Interval_64799 chr16 15886643 15888258 + 0 NA promoter-TSS (ENSMUSG00000071637.5) protein_coding-promoter-TSS (ENSMUSG00000071637.5) -966 ENSMUSG00000071637.5 ENSMUSG00000071637 ENSMUST00000210772 Cebpd protein_coding Interval_13722 chr10 21406402 21406686 + 0 NA Intergenic Intergenic 4029 ENSMUSG00000112405.1 ENSMUSG00000112405 ENSMUST00000219474 Fkbp1a-ps2 processed_pseudogene Interval_16134 chr10 60943591 60943808 + 0 NA Intergenic Intergenic -5567 ENSMUSG00000037247.3 ENSMUSG00000037247 ENSMUST00000036304 Pldi lincRNA Interval_110144 chr3 153689885 153690216 + 0 NA intron (ENSMUSG00000052544.9, intron 1 of 4) protein_coding-intron (ENSMUSG00000052544.9, intron 1 of 2) -18861 ENSMUSG00000089237.1 ENSMUSG00000089237 ENSMUST00000158612 Gm22206 snoRNA Interval_44787 chr13 48653338 48654372 + 0 NA Intergenic Intergenic -9143 ENSMUSG00000021381.4 ENSMUSG00000021381 ENSMUST00000021813 Barx1 protein_coding Interval_96005 chr2 119120375 119120751 + 0 NA exon (ENSMUSG00000027323.10, exon 4 of 6) protein_coding-exon (ENSMUSG00000027323.10, exon 4 of 6) -10955 ENSMUSG00000027323.10 ENSMUSG00000027323 ENSMUST00000143934 Rad51 protein_coding Interval_99188 chr2 157901248 157901498 + 0 NA promoter-TSS (ENSMUSG00000062846.7) processed_pseudogene-promoter-TSS (ENSMUSG00000062846.7) -163 ENSMUSG00000062846.7 ENSMUSG00000062846 ENSMUST00000121302 Gm14176 processed_pseudogene Interval_132384 chr5 144625023 144625260 + 0 NA Intergenic Intergenic 79239 ENSMUSG00000059991.7 ENSMUSG00000059991 ENSMUST00000071782 Nptx2 protein_coding Interval_62586 chr15 95017152 95017556 + 0 NA intron (ENSMUSG00000063296.5, intron 6 of 7) protein_coding-intron (ENSMUSG00000063296.5, intron 6 of 7) -30216 ENSMUSG00000077447.1 ENSMUSG00000077447 ENSMUST00000104259 Gm23129 snoRNA Interval_34517 chr12 4857254 4857461 + 0 NA TTS (ENSMUSG00000051721.6) protein_coding-TTS (ENSMUSG00000051721.6) 11904 ENSMUSG00000037336.14 ENSMUSG00000037336 ENSMUST00000147241 Mfsd2b protein_coding Interval_156264 chr8 46631265 46631562 + 0 NA intron (ENSMUSG00000031628.9, intron 2 of 6) protein_coding-intron (ENSMUSG00000031628.9, intron 2 of 6) 14122 ENSMUSG00000031628.9 ENSMUSG00000031628 ENSMUST00000210534 Casp3 protein_coding Interval_167442 chr9 69381853 69382094 + 0 NA exon (ENSMUSG00000032238.17, exon 11 of 11) protein_coding-exon (ENSMUSG00000032238.17, exon 11 of 11) -16675 ENSMUSG00000032235.15 ENSMUSG00000032235 ENSMUST00000147558 Ice2 protein_coding Interval_152929 chr7 139843350 139843619 + 0 NA intron (ENSMUSG00000025475.17, intron 3 of 7) protein_coding-intron (ENSMUSG00000025475.17, intron 3 of 7) 9119 ENSMUSG00000025475.17 ENSMUSG00000025475 ENSMUST00000129454 Adgra1 protein_coding Interval_77563 chr17 91665036 91665382 + 0 NA Intergenic Intergenic -1870 ENSMUSG00000081412.1 ENSMUSG00000081412 ENSMUST00000119343 Gm15403 processed_pseudogene Interval_111151 chr4 13248633 13248841 + 0 NA Intergenic Intergenic 18313 ENSMUSG00000080359.2 ENSMUSG00000080359 ENSMUST00000116709 Gm26250 miRNA Interval_8024 chr1 135261045 135261946 + 0 NA intron (ENSMUSG00000097680.1, intron 2 of 2) antisense-intron (ENSMUSG00000097680.1, intron 2 of 2) -3846 ENSMUSG00000003051.13 ENSMUSG00000003051 ENSMUST00000188895 Elf3 protein_coding Interval_142772 chr6 145538942 145539221 + 0 NA intron (ENSMUSG00000054966.13, intron 2 of 10) protein_coding-intron (ENSMUSG00000054966.13, intron 2 of 10) 74892 ENSMUSG00000088781.1 ENSMUSG00000088781 ENSMUST00000158156 Gm25373 snoRNA Interval_50566 chr14 15650109 15650307 + 0 NA Intergenic Intergenic -48185 ENSMUSG00000114941.1 ENSMUSG00000114941 ENSMUST00000223575 Gm47779 processed_pseudogene Interval_43587 chr13 33903943 33904271 + 0 NA intron (ENSMUSG00000052180.15, intron 1 of 4) protein_coding-intron (ENSMUSG00000052180.15, intron 1 of 6) 1600 ENSMUSG00000052180.15 ENSMUSG00000052180 ENSMUST00000222216 Serpinb6c protein_coding Interval_98563 chr2 153266641 153266874 + 0 NA TTS (ENSMUSG00000046020.13) protein_coding-TTS (ENSMUSG00000046020.13) -24656 ENSMUSG00000027475.9 ENSMUSG00000027475 ENSMUST00000028977 Kif3b protein_coding Interval_11696 chr1 184731667 184733392 + 0 NA promoter-TSS (ENSMUSG00000039377.7) protein_coding-promoter-TSS (ENSMUSG00000039377.7) -931 ENSMUSG00000039377.7 ENSMUSG00000039377 ENSMUST00000174257 Hlx protein_coding Interval_82029 chr18 67267103 67271317 + 0 NA Intergenic Intergenic -23769 ENSMUSG00000062526.4 ENSMUSG00000062526 ENSMUST00000237631 Mppe1 protein_coding Interval_65323 chr16 21513615 21514138 + 0 NA intron (ENSMUSG00000033653.18, intron 11 of 31) protein_coding-intron (ENSMUSG00000033653.18, intron 25 of 43) -19236 ENSMUSG00000033653.18 ENSMUSG00000033653 ENSMUST00000127903 Vps8 protein_coding Interval_52955 chr14 52272277 52272950 + 0 NA intron (ENSMUSG00000022159.16, intron 3 of 8) protein_coding-intron (ENSMUSG00000022159.16, intron 3 of 7) -3507 ENSMUSG00000022159.16 ENSMUSG00000022159 ENSMUST00000172634 Rab2b protein_coding Interval_125257 chr5 65705560 65705741 + 0 NA Intergenic Intergenic -23306 ENSMUSG00000107050.1 ENSMUSG00000107050 ENSMUST00000202959 C030017G13Rik TEC Interval_120463 chr4 148789405 148789927 + 0 NA Intergenic Intergenic 75963 ENSMUSG00000087273.1 ENSMUSG00000087273 ENSMUST00000139895 Gm13203 lincRNA Interval_55791 chr14 100195829 100197248 + 0 NA intron (ENSMUSG00000072294.5, intron 1 of 7) protein_coding-intron (ENSMUSG00000072294.5, intron 1 of 3) -16651 ENSMUSG00000054391.12 ENSMUSG00000054391 ENSMUST00000145018 4930517O19Rik antisense Interval_110000 chr3 152407904 152409502 + 0 NA intron (ENSMUSG00000039068.16, intron 1 of 13) protein_coding-intron (ENSMUSG00000039068.16, intron 1 of 13) 12571 ENSMUSG00000039068.16 ENSMUSG00000039068 ENSMUST00000135044 Zzz3 protein_coding Interval_44179 chr13 41634059 41634990 + 0 NA exon (ENSMUSG00000087370.3, exon 3 of 3) protein_coding-exon (ENSMUSG00000087370.3, exon 3 of 3) -14919 ENSMUSG00000054258.9 ENSMUSG00000054258 ENSMUST00000067176 Gm5082 lincRNA Interval_136764 chr6 59304099 59305475 + 0 NA Intergenic Intergenic 95917 ENSMUSG00000049232.3 ENSMUSG00000049232 ENSMUST00000062626 Tigd2 protein_coding Interval_102309 chr3 21665252 21666010 + 0 NA Intergenic Intergenic 17244 ENSMUSG00000106460.1 ENSMUSG00000106460 ENSMUST00000196649 Gm17935 processed_pseudogene Interval_4292 chr1 72415998 72416734 + 0 NA Intergenic Intergenic -43133 ENSMUSG00000085812.1 ENSMUSG00000085812 ENSMUST00000146593 Gm15843 processed_pseudogene Interval_154236 chr8 13645180 13645551 + 0 NA intron (ENSMUSG00000031453.16, intron 1 of 4) protein_coding-intron (ENSMUSG00000031453.16, intron 1 of 23) 32086 ENSMUSG00000031453.16 ENSMUSG00000031453 ENSMUST00000132439 Rasa3 protein_coding Interval_5156 chr1 86104981 86105247 + 0 NA intron (ENSMUSG00000026228.6, intron 1 of 2) protein_coding-intron (ENSMUSG00000026228.6, intron 2 of 3) 5558 ENSMUSG00000026228.6 ENSMUSG00000026228 ENSMUST00000155077 Htr2b protein_coding Interval_100510 chr2 169752944 169754034 + 0 NA intron (ENSMUSG00000047907.11, intron 1 of 2) protein_coding-intron (ENSMUSG00000047907.11, intron 1 of 1) -125171 ENSMUSG00000103662.1 ENSMUSG00000103662 ENSMUST00000191912 Gm34294 TEC Interval_91552 chr2 43111673 43111967 + 0 NA Intergenic Intergenic 302785 ENSMUSG00000105844.1 ENSMUSG00000105844 ENSMUST00000198309 Gm24350 snoRNA Interval_29074 chr11 80175632 80178606 + 0 NA exon (ENSMUSG00000020709.15, exon 10 of 11) protein_coding-exon (ENSMUSG00000020709.15, exon 10 of 11) 510 ENSMUSG00000086507.1 ENSMUSG00000086507 ENSMUST00000140556 Adap2os antisense Interval_138001 chr6 84068073 84068423 + 0 NA intron (ENSMUSG00000033788.15, intron 9 of 55) protein_coding-intron (ENSMUSG00000033788.15, intron 10 of 54) 36660 ENSMUSG00000108142.1 ENSMUSG00000108142 ENSMUST00000203282 Gm7498 processed_pseudogene Interval_135855 chr6 47942560 47943861 + 0 NA promoter-TSS (ENSMUSG00000072653.14) transcribed_unprocessed_pseudogene-promoter-TSS (ENSMUSG00000072653.14) -144 ENSMUSG00000072653.14 ENSMUSG00000072653 ENSMUST00000132381 Zfp783 transcribed_unprocessed_pseudogene Interval_143916 chr7 17327175 17327412 + 0 NA intron (ENSMUSG00000108782.1, intron 2 of 6) lincRNA-intron (ENSMUSG00000108782.1, intron 4 of 6) 44334 ENSMUSG00000108782.1 ENSMUSG00000108782 ENSMUST00000205898 Gm32772 lincRNA Interval_144701 chr7 27606308 27607045 + 0 NA intron (ENSMUSG00000004056.15, intron 1 of 3) protein_coding-intron (ENSMUSG00000004056.15, intron 1 of 13) 14930 ENSMUSG00000004056.15 ENSMUSG00000004056 ENSMUST00000136981 Akt2 protein_coding Interval_50068 chr14 7785952 7786587 + 0 NA intron (ENSMUSG00000072723.12, intron 3 of 3) transcribed_unprocessed_pseudogene-intron (ENSMUSG00000072723.12, intron 3 of 7) -5186 ENSMUSG00000097169.2 ENSMUSG00000097169 ENSMUST00000181025 Gm26661 TEC Interval_172088 chrX 7249017 7249669 + 0 NA promoter-TSS (ENSMUSG00000070139.1) miRNA-promoter-TSS (ENSMUSG00000070139.1) -846 ENSMUSG00000070139.1 ENSMUSG00000070139 ENSMUST00000093630 Mir532 miRNA Interval_100870 chr2 173021643 173022850 + 0 NA promoter-TSS (ENSMUSG00000027510.17) protein_coding-promoter-TSS (ENSMUSG00000027510.17) -192 ENSMUSG00000027510.17 ENSMUSG00000027510 ENSMUST00000130430 Rbm38 protein_coding Interval_7640 chr1 132739046 132739484 + 0 NA intron (ENSMUSG00000026442.14, intron 1 of 2) protein_coding-intron (ENSMUSG00000026442.14, intron 1 of 29) 9910 ENSMUSG00000101126.1 ENSMUSG00000101126 ENSMUST00000189499 Gm10538 antisense Interval_122082 chr5 16624927 16625123 + 0 NA Intergenic Intergenic 19303 ENSMUSG00000105660.1 ENSMUSG00000105660 ENSMUST00000200612 Gm42975 TEC Interval_34583 chr12 5484986 5485902 + 0 NA Intergenic Intergenic 73803 ENSMUSG00000037735.7 ENSMUSG00000037735 ENSMUST00000163627 2810032G03Rik lincRNA Interval_37965 chr12 73427725 73429148 + 0 NA Intergenic Intergenic -18879 ENSMUSG00000056359.6 ENSMUSG00000056359 ENSMUST00000221180 D830013O20Rik lincRNA Interval_134474 chr6 29002413 29003199 + 0 NA intron (ENSMUSG00000092090.2, intron 1 of 1) lincRNA-intron (ENSMUSG00000092090.2, intron 1 of 1) -19813 ENSMUSG00000065469.1 ENSMUSG00000065469 ENSMUST00000083535 Mir129-1 miRNA Interval_62364 chr15 91092362 91092731 + 0 NA Intergenic Intergenic 18384 ENSMUSG00000115952.1 ENSMUSG00000115952 ENSMUST00000230093 Gm18814 processed_pseudogene Interval_130719 chr5 129977918 129978185 + 0 NA intron (ENSMUSG00000066735.8, intron 1 of 2) protein_coding-intron (ENSMUSG00000066735.8, intron 1 of 2) 1057 ENSMUSG00000066735.8 ENSMUSG00000066735 ENSMUST00000202486 Vkorc1l1 protein_coding Interval_45134 chr13 52573143 52573618 + 0 NA Intergenic Intergenic -10123 ENSMUSG00000021457.14 ENSMUSG00000021457 ENSMUST00000140339 Syk protein_coding Interval_154000 chr8 11774247 11774849 + 0 NA intron (ENSMUSG00000031511.16, intron 1 of 5) protein_coding-intron (ENSMUSG00000031511.16, intron 2 of 17) -22906 ENSMUSG00000031511.16 ENSMUSG00000031511 ENSMUST00000151225 Arhgef7 protein_coding Interval_142259 chr6 140177479 140178384 + 0 NA Intergenic Intergenic -11286 ENSMUSG00000089558.1 ENSMUSG00000089558 ENSMUST00000158933 Gm24174 rRNA Interval_33494 chr11 116880695 116881369 + 0 NA Intergenic Intergenic 26954 ENSMUSG00000020818.16 ENSMUSG00000020818 ENSMUST00000134106 Mfsd11 protein_coding Interval_79331 chr18 30619912 30620161 + 0 NA Intergenic Intergenic -11146 ENSMUSG00000117526.1 ENSMUSG00000117526 ENSMUST00000235078 Gm41780 processed_pseudogene Interval_59329 chr15 51712922 51713821 + 0 NA Intergenic Intergenic -83736 ENSMUSG00000115563.1 ENSMUSG00000115563 ENSMUST00000227000 Gm34562 lincRNA Interval_102232 chr3 19741770 19743962 + 0 NA Intergenic Intergenic -26007 ENSMUSG00000106182.1 ENSMUSG00000106182 ENSMUST00000197778 Gm7442 processed_pseudogene Interval_150687 chr7 113319019 113320293 + 0 NA intron (ENSMUSG00000038187.14, intron 7 of 7) protein_coding-intron (ENSMUSG00000038187.14, intron 10 of 10) -4602 ENSMUSG00000082183.1 ENSMUSG00000082183 ENSMUST00000118029 Gm15994 processed_pseudogene Interval_10579 chr1 172000515 172001846 + 0 NA exon (ENSMUSG00000026556.15, exon 8 of 8) protein_coding-exon (ENSMUSG00000026556.15, exon 8 of 8) 25531 ENSMUSG00000026556.15 ENSMUSG00000026556 ENSMUST00000138714 Vangl2 protein_coding Interval_143662 chr7 14083621 14084060 + 0 NA intron (ENSMUSG00000074375.3, intron 3 of 5) protein_coding-intron (ENSMUSG00000074375.3, intron 3 of 5) 39204 ENSMUSG00000074375.3 ENSMUSG00000074375 ENSMUST00000098809 Sult2a3 protein_coding Interval_84683 chr19 15108576 15108853 + 0 NA Intergenic Intergenic -147948 ENSMUSG00000063586.1 ENSMUSG00000063586 ENSMUST00000072982 Gm5513 processed_pseudogene Interval_156088 chr8 44026097 44026399 + 0 NA Intergenic Intergenic -13002 ENSMUSG00000080348.1 ENSMUSG00000080348 ENSMUST00000116698 Gm24591 miRNA Interval_70820 chr17 15084682 15085272 + 0 NA intron (ENSMUSG00000036552.19, intron 7 of 7) protein_coding-intron (ENSMUSG00000036552.19, intron 7 of 7) 32135 ENSMUSG00000036552.19 ENSMUSG00000036552 ENSMUST00000186130 Ermard protein_coding Interval_64241 chr16 9680067 9680513 + 0 NA intron (ENSMUSG00000059003.12, intron 5 of 13) protein_coding-intron (ENSMUSG00000059003.12, intron 3 of 11) 314633 ENSMUSG00000059003.12 ENSMUSG00000059003 ENSMUST00000197242 Grin2a protein_coding Interval_146768 chr7 50201783 50202235 + 0 NA intron (ENSMUSG00000055409.14, intron 3 of 5) protein_coding-intron (ENSMUSG00000055409.14, intron 5 of 19) 103699 ENSMUSG00000055409.14 ENSMUSG00000055409 ENSMUST00000154410 Nell1 protein_coding Interval_85206 chr19 23765167 23765678 + 0 NA intron (ENSMUSG00000024897.9, intron 1 of 12) protein_coding-intron (ENSMUSG00000024897.9, intron 1 of 12) -17421 ENSMUSG00000117685.1 ENSMUSG00000117685 ENSMUST00000238019 Gm50299 lincRNA Interval_46123 chr13 61853554 61854666 + 0 NA intron (ENSMUSG00000113626.1, intron 1 of 2) transcribed_processed_pseudogene-intron (ENSMUSG00000113626.1, intron 1 of 2) -30446 ENSMUSG00000080451.1 ENSMUSG00000080451 ENSMUST00000116801 Gm24193 miRNA Interval_151395 chr7 122076660 122077186 + 0 NA exon (ENSMUSG00000030870.12, exon 5 of 5) protein_coding-exon (ENSMUSG00000030870.12, exon 5 of 5) 8024 ENSMUSG00000030870.12 ENSMUSG00000030870 ENSMUST00000153640 Ubfd1 protein_coding Interval_157661 chr8 72146372 72146666 + 0 NA exon (ENSMUSG00000031799.10, exon 5 of 8) protein_coding-exon (ENSMUSG00000031799.10, exon 5 of 8) -5699 ENSMUSG00000097472.1 ENSMUSG00000097472 ENSMUST00000181918 Gm26586 antisense Interval_56176 chr14 110830074 110830276 + 0 NA Intergenic Intergenic 50947 ENSMUSG00000115349.1 ENSMUSG00000115349 ENSMUST00000228159 Gm9348 processed_pseudogene Interval_74985 chr17 58959825 58960444 + 0 NA intron (ENSMUSG00000024227.14, intron 4 of 12) protein_coding-intron (ENSMUSG00000024227.14, intron 4 of 12) 53134 ENSMUSG00000024228.12 ENSMUSG00000024228 ENSMUST00000174122 Nudt12 protein_coding Interval_89681 chr2 24502974 24503540 + 0 NA Intergenic Intergenic 9189 ENSMUSG00000082307.3 ENSMUSG00000082307 ENSMUST00000119097 Gm13418 processed_pseudogene Interval_155285 chr8 30823450 30823883 + 0 NA Intergenic Intergenic -180242 ENSMUSG00000109614.1 ENSMUSG00000109614 ENSMUST00000211579 Gm45252 processed_pseudogene Interval_71675 chr17 25323106 25323781 + 0 NA TTS (ENSMUSG00000034039.8) protein_coding-TTS (ENSMUSG00000034039.8) 4083 ENSMUSG00000098180.1 ENSMUSG00000098180 ENSMUST00000182525 Gm5430 processed_pseudogene Interval_164076 chr9 31318861 31319411 + 0 NA intron (ENSMUSG00000042496.18, intron 3 of 20) protein_coding-intron (ENSMUSG00000042496.18, intron 3 of 20) 5583 ENSMUSG00000042496.18 ENSMUSG00000042496 ENSMUST00000074510 Prdm10 protein_coding Interval_22790 chr11 15608112 15608555 + 0 NA Intergenic Intergenic 126027 ENSMUSG00000083292.1 ENSMUSG00000083292 ENSMUST00000122400 Gm12010 processed_pseudogene Interval_4680 chr1 76649509 76649793 + 0 NA Intergenic Intergenic 140091 ENSMUSG00000098611.1 ENSMUSG00000098611 ENSMUST00000183584 Mir6343 miRNA Interval_119987 chr4 141253843 141254929 + 0 NA exon (ENSMUSG00000028919.11, exon 14 of 17) protein_coding-exon (ENSMUSG00000028919.11, exon 14 of 17) 7460 ENSMUSG00000028919.11 ENSMUSG00000028919 ENSMUST00000184162 Arhgef19 protein_coding Interval_169682 chr9 100356528 100356788 + 0 NA Intergenic Intergenic -33134 ENSMUSG00000101042.1 ENSMUSG00000101042 ENSMUST00000187644 Gm28167 lincRNA Interval_112536 chr4 42963700 42963901 + 0 NA Intergenic Intergenic -6134 ENSMUSG00000028451.12 ENSMUSG00000028451 ENSMUST00000139127 1700022I11Rik protein_coding Interval_13195 chr10 12951565 12951998 + 0 NA intron (ENSMUSG00000039232.12, intron 1 of 2) protein_coding-intron (ENSMUSG00000039232.12, intron 1 of 2) 12477 ENSMUSG00000039232.12 ENSMUSG00000039232 ENSMUST00000219727 Stx11 protein_coding Interval_46571 chr13 67271011 67272062 + 0 NA intron (ENSMUSG00000055480.7, intron 1 of 3) protein_coding-intron (ENSMUSG00000055480.7, intron 1 of 3) 6930 ENSMUSG00000055480.7 ENSMUSG00000055480 ENSMUST00000224648 Zfp458 protein_coding Interval_46037 chr13 60478914 60481550 + 0 NA intron (ENSMUSG00000114566.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000114566.1, intron 1 of 2) 1066 ENSMUSG00000114566.1 ENSMUSG00000114566 ENSMUST00000225097 Gm48500 lincRNA Interval_36284 chr12 40680369 40681085 + 0 NA intron (ENSMUSG00000035954.10, intron 12 of 31) protein_coding-intron (ENSMUSG00000035954.10, intron 12 of 52) -194810 ENSMUSG00000113435.1 ENSMUSG00000113435 ENSMUST00000221545 Gm19441 processed_pseudogene Interval_45609 chr13 56230718 56231526 + 0 NA intron (ENSMUSG00000097361.1, intron 3 of 4) lincRNA-intron (ENSMUSG00000097361.1, intron 3 of 4) 12818 ENSMUSG00000097361.1 ENSMUSG00000097361 ENSMUST00000181629 4930550C17Rik lincRNA Interval_10252 chr1 167597944 167599719 + 0 NA intron (ENSMUSG00000015843.10, intron 2 of 10) protein_coding-intron (ENSMUSG00000015843.10, intron 1 of 9) 371 ENSMUSG00000015843.10 ENSMUSG00000015843 ENSMUST00000111380 Rxrg protein_coding Interval_170294 chr9 106739622 106740830 + 0 NA intron (ENSMUSG00000040661.6, intron 2 of 21) protein_coding-intron (ENSMUSG00000040661.6, intron 2 of 21) 48950 ENSMUSG00000040661.6 ENSMUSG00000040661 ENSMUST00000191300 Rad54l2 protein_coding Interval_122232 chr5 20509853 20510044 + 0 NA intron (ENSMUSG00000040003.18, intron 6 of 15) protein_coding-intron (ENSMUSG00000040003.18, intron 10 of 22) -78648 ENSMUSG00000106240.1 ENSMUSG00000106240 ENSMUST00000196129 Gm3544 processed_pseudogene Interval_122165 chr5 18502694 18503605 + 0 NA Intergenic Intergenic -12955 ENSMUSG00000104718.1 ENSMUSG00000104718 ENSMUST00000199456 Gm31752 lincRNA Interval_112146 chr4 34941304 34941675 + 0 NA promoter-TSS (ENSMUSG00000082709.1) processed_pseudogene-promoter-TSS (ENSMUSG00000082709.1) -140 ENSMUSG00000082709.1 ENSMUSG00000082709 ENSMUST00000121986 Gm12362 processed_pseudogene Interval_109209 chr3 137901444 137902475 + 0 NA intron (ENSMUSG00000074212.7, intron 3 of 3) protein_coding-intron (ENSMUSG00000074212.7, intron 3 of 7) -3050 ENSMUSG00000081829.1 ENSMUSG00000081829 ENSMUST00000118147 Gm15460 processed_pseudogene Interval_70241 chr17 7188360 7190288 + 0 NA exon (ENSMUSG00000023809.10, exon 2 of 2) protein_coding-exon (ENSMUSG00000023809.10, exon 2 of 2) 19197 ENSMUSG00000023809.10 ENSMUSG00000023809 ENSMUST00000231530 Rps6ka2 protein_coding Interval_72749 chr17 31912208 31913552 + 0 NA exon (ENSMUSG00000117980.1, exon 1 of 1) TEC-exon (ENSMUSG00000117980.1, exon 1 of 1) 214 ENSMUSG00000117980.1 ENSMUSG00000117980 ENSMUST00000237005 Gm30571 TEC Interval_119277 chr4 136605709 136606313 + 0 NA Intergenic Intergenic 3795 ENSMUSG00000083054.1 ENSMUSG00000083054 ENSMUST00000119037 Gm12986 processed_pseudogene Interval_105012 chr3 79783762 79785215 + 0 NA Intergenic Intergenic -50445 ENSMUSG00000077461.1 ENSMUSG00000077461 ENSMUST00000104273 Gm26420 snRNA Interval_77373 chr17 88304135 88304468 + 0 NA intron (ENSMUSG00000117497.1, intron 2 of 3) lincRNA-intron (ENSMUSG00000117497.1, intron 3 of 4) 1077 ENSMUSG00000117497.1 ENSMUSG00000117497 ENSMUST00000234925 1700116H05Rik lincRNA Interval_30258 chr11 92212031 92212838 + 0 NA Intergenic Intergenic -188021 ENSMUSG00000093113.1 ENSMUSG00000093113 ENSMUST00000175372 Gm22702 miRNA Interval_72392 chr17 29549304 29550418 + 0 NA promoter-TSS (ENSMUSG00000042203.8) protein_coding-promoter-TSS (ENSMUSG00000042203.8) 62 ENSMUSG00000099329.2 ENSMUSG00000099329 ENSMUST00000150388 Gm28052 processed_transcript Interval_45798 chr13 58157243 58159035 + 0 NA promoter-TSS (ENSMUSG00000114309.1) bidirectional_promoter_lncRNA-promoter-TSS (ENSMUSG00000114309.1) 490 ENSMUSG00000050002.14 ENSMUSG00000050002 ENSMUST00000225236 Idnk protein_coding Interval_120976 chr4 152020751 152022035 + 0 NA promoter-TSS (ENSMUSG00000028952.12) protein_coding-promoter-TSS (ENSMUSG00000028952.12) 5051 ENSMUSG00000028952.12 ENSMUSG00000028952 ENSMUST00000131935 Zbtb48 protein_coding Interval_158984 chr8 88451282 88451885 + 0 NA Intergenic Intergenic 60462 ENSMUSG00000110280.1 ENSMUSG00000110280 ENSMUST00000211701 Gm45497 processed_pseudogene Interval_112219 chr4 36351801 36352749 + 0 NA intron (ENSMUSG00000045083.14, intron 3 of 6) protein_coding-intron (ENSMUSG00000045083.14, intron 3 of 7) -91795 ENSMUSG00000084352.1 ENSMUSG00000084352 ENSMUST00000117809 Gm12370 processed_pseudogene Interval_29884 chr11 87497190 87497646 + 0 NA intron (ENSMUSG00000010342.16, intron 8 of 30) protein_coding-intron (ENSMUSG00000010342.16, intron 8 of 30) 26050 ENSMUSG00000105115.1 ENSMUSG00000105115 ENSMUST00000196353 Rnu3b2 snoRNA Interval_37867 chr12 72693542 72695371 + 0 NA Intergenic Intergenic -29702 ENSMUSG00000021094.10 ENSMUSG00000021094 ENSMUST00000221674 Dhrs7 protein_coding Interval_50938 chr14 20885249 20886990 + 0 NA Intergenic Intergenic -29698 ENSMUSG00000114728.1 ENSMUSG00000114728 ENSMUST00000225216 Gm6128 processed_pseudogene Interval_32546 chr11 108423718 108425838 + 0 NA promoter-TSS (ENSMUSG00000020728.17) protein_coding-promoter-TSS (ENSMUSG00000020728.17) 1505 ENSMUSG00000082544.1 ENSMUSG00000082544 ENSMUST00000119828 Gm11667 processed_pseudogene Interval_106825 chr3 101130584 101131321 + 0 NA Intergenic Intergenic -43559 ENSMUSG00000105717.1 ENSMUSG00000105717 ENSMUST00000200367 Gm43465 sense_intronic Interval_27680 chr11 69436873 69438023 + 0 NA intron (ENSMUSG00000005237.14, intron 64 of 85) protein_coding-intron (ENSMUSG00000005237.14, intron 63 of 84) -11100 ENSMUSG00000086591.1 ENSMUSG00000086591 ENSMUST00000124108 Dnah2os antisense Interval_134759 chr6 31266364 31267123 + 0 NA intron (ENSMUSG00000087380.7, intron 2 of 5) processed_transcript-intron (ENSMUSG00000087380.7, intron 1 of 6) -22220 ENSMUSG00000106867.1 ENSMUSG00000106867 ENSMUST00000201868 Gm43800 TEC Interval_8795 chr1 151219896 151220875 + 0 NA Intergenic Intergenic 10254 ENSMUSG00000114591.1 ENSMUSG00000114591 ENSMUST00000224757 Gm47996 protein_coding Interval_141198 chr6 125538402 125540796 + 0 NA Intergenic Intergenic -13364 ENSMUSG00000001930.17 ENSMUSG00000001930 ENSMUST00000146264 Vwf protein_coding Interval_99276 chr2 158609763 158611445 + 0 NA promoter-TSS (ENSMUSG00000037771.11) protein_coding-promoter-TSS (ENSMUSG00000037771.11) -14 ENSMUSG00000086496.1 ENSMUSG00000086496 ENSMUST00000155319 Gm14204 processed_transcript Interval_57207 chr15 7762875 7763151 + 0 NA Intergenic Intergenic 2299 ENSMUSG00000115497.1 ENSMUSG00000115497 ENSMUST00000228223 Gm49207 lincRNA Interval_24776 chr11 37370837 37371023 + 0 NA Intergenic Intergenic -288059 ENSMUSG00000087388.1 ENSMUSG00000087388 ENSMUST00000131013 Gm12128 lincRNA Interval_4981 chr1 83276894 83277258 + 0 NA exon (ENSMUSG00000026163.17, exon 8 of 10) protein_coding-exon (ENSMUSG00000026163.17, exon 8 of 10) -37437 ENSMUSG00000079140.3 ENSMUSG00000079140 ENSMUST00000159051 Gm6374 processed_pseudogene Interval_15415 chr10 45798600 45800716 + 0 NA Intergenic Intergenic 17203 ENSMUSG00000098409.1 ENSMUSG00000098409 ENSMUST00000183851 Gm27410 miRNA Interval_142098 chr6 137144120 137144366 + 0 NA intron (ENSMUSG00000030222.13, intron 2 of 2) protein_coding-intron (ENSMUSG00000030222.13, intron 2 of 4) 2686 ENSMUSG00000107567.1 ENSMUSG00000107567 ENSMUST00000203679 4930480K02Rik TEC Interval_102656 chr3 28968058 28968265 + 0 NA Intergenic Intergenic 75544 ENSMUSG00000074655.1 ENSMUSG00000074655 ENSMUST00000099170 Gm1527 protein_coding Interval_66274 chr16 32803320 32804540 + 0 NA TTS (ENSMUSG00000094430.2) protein_coding-TTS (ENSMUSG00000094430.2) -3553 ENSMUSG00000097256.1 ENSMUSG00000097256 ENSMUST00000180469 Gm26769 antisense Interval_96453 chr2 123311976 123313289 + 0 NA Intergenic Intergenic 38708 ENSMUSG00000084372.1 ENSMUSG00000084372 ENSMUST00000119363 Gm13988 processed_pseudogene Interval_62213 chr15 88867161 88868513 + 0 NA Intergenic Intergenic 2917 ENSMUSG00000035828.11 ENSMUSG00000035828 ENSMUST00000229969 Pim3 protein_coding Interval_58471 chr15 34912616 34912810 + 0 NA intron (ENSMUSG00000022329.15, intron 10 of 10) protein_coding-intron (ENSMUSG00000022329.15, intron 10 of 10) 47524 ENSMUSG00000022329.15 ENSMUSG00000022329 ENSMUST00000138841 Stk3 protein_coding Interval_82941 chr18 79831200 79831379 + 0 NA Intergenic Intergenic 30610 ENSMUSG00000117963.1 ENSMUSG00000117963 ENSMUST00000237996 Gm19062 processed_pseudogene Interval_98673 chr2 154173532 154174077 + 0 NA Intergenic Intergenic 11197 ENSMUSG00000027484.2 ENSMUSG00000027484 ENSMUST00000028986 Bpifa5 protein_coding Interval_137225 chr6 70355890 70356092 + 0 NA intron (ENSMUSG00000076589.2, intron 1 of 1) IG_V_gene-intron (ENSMUSG00000076589.2, intron 1 of 1) 139 ENSMUSG00000076589.2 ENSMUSG00000076589 ENSMUST00000103390 Igkv8-18 IG_V_gene Interval_96804 chr2 128427829 128429916 + 0 NA exon (ENSMUSG00000074813.14, exon 1 of 2) lincRNA-exon (ENSMUSG00000074813.14, exon 1 of 2) 453 ENSMUSG00000074813.14 ENSMUSG00000074813 ENSMUST00000223654 Morrbid lincRNA Interval_100852 chr2 172891749 172892592 + 0 NA intron (ENSMUSG00000008999.7, intron 3 of 6) protein_coding-intron (ENSMUSG00000008999.7, intron 3 of 6) -27829 ENSMUSG00000093160.1 ENSMUSG00000093160 ENSMUST00000175419 Gm22773 miRNA Interval_34129 chr11 120795866 120796828 + 0 NA promoter-TSS (ENSMUSG00000025155.15) protein_coding-promoter-TSS (ENSMUSG00000025155.15) 48 ENSMUSG00000025155.15 ENSMUSG00000025155 ENSMUST00000129955 Dus1l protein_coding Interval_108797 chr3 131524907 131525724 + 0 NA Intergenic Intergenic -33904 ENSMUSG00000050931.7 ENSMUSG00000050931 ENSMUST00000200431 Sgms2 protein_coding Interval_84345 chr19 10244223 10244444 + 0 NA TTS (ENSMUSG00000035735.10) protein_coding-TTS (ENSMUSG00000035735.10) -3585 ENSMUSG00000036098.15 ENSMUSG00000036098 ENSMUST00000189439 Myrf protein_coding Interval_170507 chr9 108384524 108385707 + 0 NA exon (ENSMUSG00000032612.14, exon 18 of 18) protein_coding-exon (ENSMUSG00000032612.14, exon 18 of 18) 3744 ENSMUSG00000032612.14 ENSMUSG00000032612 ENSMUST00000194939 Usp4 protein_coding Interval_163695 chr9 24482646 24483107 + 0 NA intron (ENSMUSG00000043067.15, intron 3 of 21) protein_coding-intron (ENSMUSG00000043067.15, intron 3 of 22) 20264 ENSMUSG00000043067.15 ENSMUSG00000043067 ENSMUST00000129048 Dpy19l1 protein_coding Interval_122203 chr5 19505726 19506384 + 0 NA promoter-TSS (ENSMUSG00000106204.1) processed_pseudogene-promoter-TSS (ENSMUSG00000106204.1) 68 ENSMUSG00000106204.1 ENSMUSG00000106204 ENSMUST00000197169 Gm21009 processed_pseudogene Interval_2026 chr1 35973373 35973673 + 0 NA Intergenic Intergenic 12850 ENSMUSG00000102279.1 ENSMUSG00000102279 ENSMUST00000192572 Gm37146 lincRNA Interval_26154 chr11 54771924 54772201 + 0 NA intron (ENSMUSG00000052298.12, intron 1 of 4) protein_coding-intron (ENSMUSG00000052298.12, intron 1 of 5) 15584 ENSMUSG00000052298.12 ENSMUSG00000052298 ENSMUST00000123424 Cdc42se2 protein_coding Interval_70633 chr17 12596388 12597369 + 0 NA intron (ENSMUSG00000040966.10, intron 2 of 10) protein_coding-intron (ENSMUSG00000040966.10, intron 2 of 10) 12685 ENSMUSG00000040966.10 ENSMUSG00000040966 ENSMUST00000233066 Slc22a2 protein_coding Interval_165107 chr9 44603409 44605954 + 0 NA promoter-TSS (ENSMUSG00000032097.10) protein_coding-promoter-TSS (ENSMUSG00000032097.10) -215 ENSMUSG00000032097.10 ENSMUSG00000032097 ENSMUST00000213697 Ddx6 protein_coding Interval_93492 chr2 73518359 73519070 + 0 NA intron (ENSMUSG00000075284.10, intron 1 of 3) protein_coding-intron (ENSMUSG00000075284.10, intron 1 of 7) 59009 ENSMUSG00000086069.1 ENSMUSG00000086069 ENSMUST00000145170 Gm13708 lincRNA Interval_68441 chr16 76685221 76686499 + 0 NA intron (ENSMUSG00000108903.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000108903.1, intron 1 of 1) 5347 ENSMUSG00000108903.1 ENSMUSG00000108903 ENSMUST00000208702 Gm45029 lincRNA Interval_37766 chr12 71854251 71854602 + 0 NA intron (ENSMUSG00000034574.10, intron 1 of 14) protein_coding-intron (ENSMUSG00000034574.10, intron 1 of 25) -7135 ENSMUSG00000098224.1 ENSMUSG00000098224 ENSMUST00000183329 Gm7985 processed_pseudogene Interval_122366 chr5 21717592 21719001 + 0 NA Intergenic Intergenic -16902 ENSMUSG00000044968.16 ENSMUSG00000044968 ENSMUST00000060899 Napepld protein_coding Interval_34191 chr11 121188074 121188323 + 0 NA intron (ENSMUSG00000025169.6, intron 7 of 8) protein_coding-intron (ENSMUSG00000025169.6, intron 7 of 8) 16513 ENSMUSG00000025169.6 ENSMUSG00000025169 ENSMUST00000026169 Ogfod3 protein_coding Interval_114939 chr4 87361727 87362892 + 0 NA Intergenic Intergenic 63947 ENSMUSG00000086512.1 ENSMUSG00000086512 ENSMUST00000146704 Gm12600 lincRNA Interval_43592 chr13 33943495 33943797 + 0 NA intron (ENSMUSG00000085457.3, intron 1 of 4) protein_coding-intron (ENSMUSG00000060147.15, intron 2 of 7) 7614 ENSMUSG00000085457.3 ENSMUSG00000085457 ENSMUST00000181800 1110046J04Rik antisense Interval_151500 chr7 123110987 123111216 + 0 NA intron (ENSMUSG00000110230.1, intron 2 of 2) lincRNA-intron (ENSMUSG00000110230.1, intron 2 of 2) -60545 ENSMUSG00000052707.8 ENSMUSG00000052707 ENSMUST00000206126 Tnrc6a protein_coding Interval_73404 chr17 37011221 37013645 + 0 NA exon (ENSMUSG00000076439.12, exon 6 of 8) protein_coding-exon (ENSMUSG00000076439.12, exon 6 of 8) -2910 ENSMUSG00000088819.1 ENSMUSG00000088819 ENSMUST00000158194 Gm22388 misc_RNA Interval_100107 chr2 167104212 167105254 + 0 NA exon (ENSMUSG00000050556.9, exon 3 of 3) protein_coding-exon (ENSMUSG00000050556.9, exon 3 of 3) 11174 ENSMUSG00000083436.1 ENSMUSG00000083436 ENSMUST00000121824 Gm11471 processed_pseudogene Interval_153039 chr7 141017488 141017832 + 0 NA promoter-TSS (ENSMUSG00000059108.4) protein_coding-promoter-TSS (ENSMUSG00000059108.4) -102 ENSMUSG00000059108.4 ENSMUSG00000059108 ENSMUST00000081924 Ifitm6 protein_coding Interval_35628 chr12 26276860 26277540 + 0 NA Intergenic Intergenic -24655 ENSMUSG00000113813.1 ENSMUSG00000113813 ENSMUST00000222815 Gm29968 lincRNA Interval_25674 chr11 50703704 50704182 + 0 NA intron (ENSMUSG00000036545.9, intron 3 of 20) protein_coding-intron (ENSMUSG00000036545.9, intron 3 of 21) 14972 ENSMUSG00000087080.1 ENSMUSG00000087080 ENSMUST00000137567 Gm12199 antisense Interval_60073 chr15 64561951 64562583 + 0 NA Intergenic Intergenic 71241 ENSMUSG00000115328.1 ENSMUSG00000115328 ENSMUST00000227641 Gm30691 lincRNA Interval_156194 chr8 45857136 45858762 + 0 NA Intergenic Intergenic 6654 ENSMUSG00000080378.1 ENSMUSG00000080378 ENSMUST00000116728 Gm25309 snRNA Interval_103561 chr3 49538518 49539024 + 0 NA Intergenic Intergenic 8021 ENSMUSG00000104437.1 ENSMUSG00000104437 ENSMUST00000191727 Gm37424 processed_pseudogene Interval_74968 chr17 58480874 58481183 + 0 NA Intergenic Intergenic 18703 ENSMUSG00000117281.1 ENSMUSG00000117281 ENSMUST00000233462 Gm49848 processed_pseudogene Interval_81078 chr18 53689635 53689998 + 0 NA intron (ENSMUSG00000048799.8, intron 19 of 19) protein_coding-intron (ENSMUSG00000048799.8, intron 19 of 20) 50710 ENSMUSG00000118362.1 ENSMUSG00000118362 ENSMUST00000235670 Gm19466 lincRNA Interval_83001 chr18 80280115 80280983 + 0 NA intron (ENSMUSG00000034006.17, intron 3 of 4) protein_coding-intron (ENSMUSG00000034006.17, intron 3 of 4) 23131 ENSMUSG00000102959.1 ENSMUSG00000102959 ENSMUST00000192763 Gm37015 TEC Interval_29851 chr11 87274427 87275139 + 0 NA intron (ENSMUSG00000046442.4, intron 1 of 3) protein_coding-intron (ENSMUSG00000046442.4, intron 1 of 6) -29890 ENSMUSG00000080976.1 ENSMUSG00000080976 ENSMUST00000118128 Gm11490 processed_pseudogene Interval_104918 chr3 78993060 78993347 + 0 NA Intergenic Intergenic 13281 ENSMUSG00000077487.1 ENSMUSG00000077487 ENSMUST00000104299 Gm23440 snoRNA Interval_132943 chr5 148885529 148886544 + 0 NA exon (ENSMUSG00000041298.15, exon 10 of 10) protein_coding-exon (ENSMUSG00000041298.15, exon 10 of 10) -40652 ENSMUSG00000106810.1 ENSMUSG00000106810 ENSMUST00000202134 Gm43600 unprocessed_pseudogene Interval_112759 chr4 44650219 44650584 + 0 NA intron (ENSMUSG00000014030.15, intron 4 of 8) protein_coding-intron (ENSMUSG00000014030.15, intron 5 of 9) -4678 ENSMUSG00000014030.15 ENSMUSG00000014030 ENSMUST00000191036 Pax5 protein_coding Interval_165105 chr9 44594369 44595778 + 0 NA Intergenic Intergenic 2945 ENSMUSG00000110721.1 ENSMUSG00000110721 ENSMUST00000217329 Gm47231 lincRNA Interval_131663 chr5 139140619 139141590 + 0 NA intron (ENSMUSG00000025855.13, intron 1 of 2) protein_coding-intron (ENSMUSG00000025855.13, intron 1 of 2) 8897 ENSMUSG00000025855.13 ENSMUSG00000025855 ENSMUST00000130180 Prkar1b protein_coding Interval_103696 chr3 51689471 51690694 + 0 NA exon (ENSMUSG00000061143.15, exon 4 of 4) protein_coding-exon (ENSMUSG00000061143.15, exon 4 of 4) -3634 ENSMUSG00000074603.3 ENSMUSG00000074603 ENSMUST00000099104 Gm10729 TEC Interval_70581 chr17 12124755 12125938 + 0 NA intron (ENSMUSG00000023827.8, intron 1 of 8) protein_coding-intron (ENSMUSG00000023827.8, intron 1 of 8) 6017 ENSMUSG00000023827.8 ENSMUSG00000023827 ENSMUST00000167905 Agpat4 protein_coding Interval_116666 chr4 116538582 116539138 + 0 NA TTS (ENSMUSG00000028696.12) protein_coding-TTS (ENSMUSG00000028696.12) -12880 ENSMUSG00000087299.1 ENSMUSG00000087299 ENSMUST00000138426 Gm12953 antisense Interval_22175 chr11 6827110 6827641 + 0 NA Intergenic Intergenic -1566 ENSMUSG00000082897.1 ENSMUSG00000082897 ENSMUST00000121480 Gm11982 processed_pseudogene Interval_71008 chr17 17184697 17184927 + 0 NA Intergenic Intergenic 63397 ENSMUSG00000095990.1 ENSMUSG00000095990 ENSMUST00000147630 Zfp97 protein_coding Interval_83266 chr18 83123906 83125299 + 0 NA Intergenic Intergenic -16742 ENSMUSG00000100430.2 ENSMUSG00000100430 ENSMUST00000236396 1700095A13Rik lincRNA Interval_113177 chr4 48937259 48937442 + 0 NA intron (ENSMUSG00000084787.1, intron 2 of 3) lincRNA-intron (ENSMUSG00000084787.1, intron 2 of 3) -35628 ENSMUSG00000083869.1 ENSMUSG00000083869 ENSMUST00000118372 Gm12442 processed_pseudogene Interval_30163 chr11 90019240 90019505 + 0 NA Intergenic Intergenic -10976 ENSMUSG00000069763.3 ENSMUSG00000069763 ENSMUST00000092788 Tmem100 protein_coding Interval_97138 chr2 131560998 131563256 + 0 NA exon (ENSMUSG00000027335.9, exon 1 of 2) protein_coding-exon (ENSMUSG00000027335.9, exon 1 of 2) 156 ENSMUSG00000027335.9 ENSMUSG00000027335 ENSMUST00000103184 Adra1d protein_coding Interval_94418 chr2 91078021 91079053 + 0 NA Intergenic Intergenic -3853 ENSMUSG00000002111.8 ENSMUSG00000002111 ENSMUST00000132741 Spi1 protein_coding Interval_20080 chr10 113561335 113562450 + 0 NA intron (ENSMUSG00000112087.1, intron 1 of 3) lincRNA-intron (ENSMUSG00000112087.1, intron 1 of 3) 871 ENSMUSG00000112087.1 ENSMUSG00000112087 ENSMUST00000218612 Gm40765 lincRNA Interval_157244 chr8 68368045 68369010 + 0 NA promoter-TSS (ENSMUSG00000085197.7) antisense-promoter-TSS (ENSMUSG00000085197.7) 61 ENSMUSG00000085197.7 ENSMUSG00000085197 ENSMUST00000139265 1700125H03Rik antisense Interval_79082 chr18 24401659 24403347 + 0 NA Intergenic Intergenic 26667 ENSMUSG00000065532.1 ENSMUSG00000065532 ENSMUST00000083598 Mir187 miRNA Interval_75107 chr17 63492774 63493425 + 0 NA promoter-TSS (ENSMUSG00000023965.13) protein_coding-promoter-TSS (ENSMUSG00000023965.13) -41388 ENSMUSG00000023965.13 ENSMUSG00000023965 ENSMUST00000090318 Fbxl17 protein_coding Interval_25398 chr11 47391650 47391996 + 0 NA intron (ENSMUSG00000020354.15, intron 2 of 2) protein_coding-intron (ENSMUSG00000020354.15, intron 1 of 6) -149609 ENSMUSG00000082792.1 ENSMUSG00000082792 ENSMUST00000121420 Gm12176 processed_pseudogene Interval_64412 chr16 11215560 11215822 + 0 NA intron (ENSMUSG00000097537.2, intron 2 of 2) antisense-intron (ENSMUSG00000097537.2, intron 1 of 1) 11996 ENSMUSG00000097537.2 ENSMUSG00000097537 ENSMUST00000230245 2610020C07Rik antisense Interval_163337 chr9 20943558 20944385 + 0 NA intron (ENSMUSG00000004099.16, intron 1 of 38) protein_coding-intron (ENSMUSG00000004099.16, intron 1 of 38) 8634 ENSMUSG00000004099.16 ENSMUSG00000004099 ENSMUST00000216135 Dnmt1 protein_coding Interval_12073 chr1 189550809 189551877 + 0 NA Intergenic Intergenic 88891 ENSMUSG00000103087.1 ENSMUSG00000103087 ENSMUST00000192679 Gm38122 TEC Interval_115763 chr4 103458232 103460498 + 0 NA intron (ENSMUSG00000086136.1, intron 2 of 2) lincRNA-intron (ENSMUSG00000086136.1, intron 2 of 2) -12494 ENSMUSG00000094477.1 ENSMUSG00000094477 ENSMUST00000179866 Gm23064 miRNA Interval_16799 chr10 68229554 68232127 + 0 NA intron (ENSMUSG00000019947.10, intron 3 of 9) protein_coding-intron (ENSMUSG00000019947.10, intron 3 of 10) 47900 ENSMUSG00000019947.10 ENSMUSG00000019947 ENSMUST00000218425 Arid5b protein_coding Interval_38197 chr12 76311392 76311971 + 0 NA intron (ENSMUSG00000021048.7, intron 2 of 4) protein_coding-intron (ENSMUSG00000021048.7, intron 23 of 27) 4615 ENSMUSG00000021048.7 ENSMUSG00000021048 ENSMUST00000220321 Mthfd1 protein_coding Interval_70531 chr17 11607926 11608351 + 0 NA intron (ENSMUSG00000023826.16, intron 5 of 10) protein_coding-intron (ENSMUSG00000023826.16, intron 3 of 3) -62340 ENSMUSG00000099618.1 ENSMUSG00000099618 ENSMUST00000185957 Gm28118 processed_pseudogene Interval_141718 chr6 134014228 134015671 + 0 NA Intergenic Intergenic -58405 ENSMUSG00000108214.1 ENSMUSG00000108214 ENSMUST00000204995 Gm43982 TEC Interval_115955 chr4 106584548 106585524 + 0 NA intron (ENSMUSG00000034926.3, intron 6 of 8) protein_coding-intron (ENSMUSG00000034926.3, intron 6 of 8) 4072 ENSMUSG00000085023.1 ENSMUSG00000085023 ENSMUST00000146976 Gm12744 antisense Interval_21623 chr11 3301993 3303096 + 0 NA intron (ENSMUSG00000020453.17, intron 2 of 2) protein_coding-intron (ENSMUSG00000020453.17, intron 3 of 3) 4260 ENSMUSG00000020453.17 ENSMUSG00000020453 ENSMUST00000154319 Patz1 protein_coding Interval_33173 chr11 114955025 114955693 + 0 NA TTS (ENSMUSG00000058728.15) protein_coding-TTS (ENSMUSG00000058728.15) 13798 ENSMUSG00000058728.15 ENSMUSG00000058728 ENSMUST00000061637 Cd300c protein_coding Interval_126173 chr5 81359520 81361240 + 0 NA intron (ENSMUSG00000037605.16, intron 5 of 12) protein_coding-intron (ENSMUSG00000037605.16, intron 2 of 24) 111131 ENSMUSG00000107226.1 ENSMUSG00000107226 ENSMUST00000201153 Gm43594 TEC Interval_66275 chr16 32806672 32806862 + 0 NA promoter-TSS (ENSMUSG00000097256.1) antisense-promoter-TSS (ENSMUSG00000097256.1) -716 ENSMUSG00000097256.1 ENSMUSG00000097256 ENSMUST00000180469 Gm26769 antisense Interval_103882 chr3 54399219 54399804 + 0 NA Intergenic Intergenic 16404 ENSMUSG00000027750.16 ENSMUSG00000027750 ENSMUST00000150868 Postn protein_coding Interval_28745 chr11 78040848 78041208 + 0 NA intron (ENSMUSG00000061981.14, intron 1 of 11) protein_coding-intron (ENSMUSG00000061981.14, intron 1 of 10) 3097 ENSMUSG00000061981.14 ENSMUSG00000061981 ENSMUST00000136353 Flot2 protein_coding Interval_53181 chr14 54962835 54963117 + 0 NA TTS (ENSMUSG00000040752.16) protein_coding-TTS (ENSMUSG00000040752.16) -5702 ENSMUSG00000097652.2 ENSMUSG00000097652 ENSMUST00000181782 Mhrt antisense Interval_56884 chr14 122796809 122797003 + 0 NA intron (ENSMUSG00000041650.15, intron 3 of 3) protein_coding-intron (ENSMUSG00000041650.15, intron 20 of 23) 110590 ENSMUSG00000115264.1 ENSMUSG00000115264 ENSMUST00000226674 Gm49260 TEC Interval_42513 chr13 14306368 14307080 + 0 NA intron (ENSMUSG00000021301.9, intron 4 of 17) protein_coding-intron (ENSMUSG00000021301.9, intron 12 of 28) 72849 ENSMUSG00000113981.1 ENSMUSG00000113981 ENSMUST00000222578 Gm47011 TEC Interval_110400 chr3 157763412 157763663 + 0 NA Intergenic Intergenic -37129 ENSMUSG00000106632.1 ENSMUSG00000106632 ENSMUST00000199819 Gm33466 lincRNA Interval_85375 chr19 25319430 25319693 + 0 NA intron (ENSMUSG00000032702.16, intron 3 of 13) protein_coding-intron (ENSMUSG00000032702.16, intron 3 of 13) 27642 ENSMUSG00000118238.1 ENSMUSG00000118238 ENSMUST00000235913 Gm34432 processed_pseudogene Interval_126775 chr5 92835242 92835624 + 0 NA intron (ENSMUSG00000029381.16, intron 1 of 9) protein_coding-intron (ENSMUSG00000029381.16, intron 1 of 9) -21038 ENSMUSG00000029381.16 ENSMUSG00000029381 ENSMUST00000172752 Shroom3 protein_coding Interval_6361 chr1 106292508 106293009 + 0 NA intron (ENSMUSG00000044340.7, intron 3 of 16) protein_coding-intron (ENSMUSG00000044340.7, intron 3 of 16) 11333 ENSMUSG00000044340.7 ENSMUSG00000044340 ENSMUST00000124895 Phlpp1 protein_coding Interval_145830 chr7 39719893 39720155 + 0 NA Intergenic Intergenic 20505 ENSMUSG00000101901.1 ENSMUSG00000101901 ENSMUST00000188228 Gm9230 processed_pseudogene Interval_102621 chr3 28571668 28571948 + 0 NA intron (ENSMUSG00000027692.16, intron 11 of 30) protein_coding-intron (ENSMUSG00000027692.16, intron 11 of 30) -149709 ENSMUSG00000027690.13 ENSMUSG00000027690 ENSMUST00000169047 Slc2a2 protein_coding Interval_120173 chr4 143186649 143188296 + 0 NA intron (ENSMUSG00000057637.13, intron 2 of 3) protein_coding-intron (ENSMUSG00000057637.13, intron 2 of 9) -16593 ENSMUSG00000087903.1 ENSMUSG00000087903 ENSMUST00000157278 Gm22039 snoRNA Interval_71325 chr17 22284062 22284591 + 0 NA Intergenic Intergenic 30511 ENSMUSG00000117284.1 ENSMUSG00000117284 ENSMUST00000233465 Gm7072 protein_coding Interval_130631 chr5 129338075 129338291 + 0 NA Intergenic Intergenic -25937 ENSMUSG00000104681.1 ENSMUSG00000104681 ENSMUST00000199076 Gm43001 lincRNA Interval_156930 chr8 61866447 61867721 + 0 NA intron (ENSMUSG00000086866.2, intron 2 of 2) protein_coding-intron (ENSMUSG00000058056.16, intron 2 of 19) -45568 ENSMUSG00000110131.1 ENSMUSG00000110131 ENSMUST00000210904 Gm18066 processed_pseudogene Interval_148797 chr7 87902550 87902988 + 0 NA intron (ENSMUSG00000049583.15, intron 2 of 8) protein_coding-intron (ENSMUSG00000049583.15, intron 2 of 7) 12020 ENSMUSG00000108893.1 ENSMUSG00000108893 ENSMUST00000207573 Gm44927 TEC Interval_132216 chr5 143393876 143394356 + 0 NA intron (ENSMUSG00000106198.1, intron 1 of 1) antisense-intron (ENSMUSG00000093720.1, intron 1 of 1) -1387 ENSMUSG00000105594.1 ENSMUSG00000105594 ENSMUST00000196584 Gm43398 TEC Interval_75693 chr17 70720094 70721247 + 0 NA intron (ENSMUSG00000003279.17, intron 5 of 10) protein_coding-intron (ENSMUSG00000003279.17, intron 9 of 14) 34912 ENSMUSG00000097282.1 ENSMUSG00000097282 ENSMUST00000181546 5031415H12Rik antisense Interval_161325 chr8 119755428 119756655 + 0 NA exon (ENSMUSG00000034112.9, exon 26 of 27) protein_coding-exon (ENSMUSG00000034112.9, exon 26 of 27) 22353 ENSMUSG00000034105.9 ENSMUSG00000034105 ENSMUST00000212534 Meak7 protein_coding Interval_128759 chr5 115124972 115125658 + 0 NA exon (ENSMUSG00000046562.5, exon 5 of 5) protein_coding-exon (ENSMUSG00000046562.5, exon 5 of 5) -6005 ENSMUSG00000029545.13 ENSMUSG00000029545 ENSMUST00000141142 Acads protein_coding Interval_165141 chr9 44782116 44782440 + 0 NA TTS (ENSMUSG00000002031.13) protein_coding-TTS (ENSMUSG00000002031.13) 9269 ENSMUSG00000002031.13 ENSMUSG00000002031 ENSMUST00000149020 Ift46 protein_coding Interval_165445 chr9 48137457 48137773 + 0 NA intron (ENSMUSG00000110924.1, intron 2 of 2) lincRNA-intron (ENSMUSG00000110924.1, intron 2 of 2) 21350 ENSMUSG00000110924.1 ENSMUSG00000110924 ENSMUST00000214538 Gm40518 lincRNA Interval_51107 chr14 23309632 23309872 + 0 NA intron (ENSMUSG00000063142.15, intron 27 of 28) protein_coding-intron (ENSMUSG00000063142.15, intron 26 of 28) -11392 ENSMUSG00000114803.1 ENSMUSG00000114803 ENSMUST00000225611 Gm46443 processed_pseudogene Interval_87665 chr19 54094544 54095824 + 0 NA Intergenic Intergenic 10625 ENSMUSG00000117921.1 ENSMUSG00000117921 ENSMUST00000236398 Gm50186 lincRNA Interval_14292 chr10 30535318 30535729 + 0 NA intron (ENSMUSG00000019792.8, intron 10 of 10) protein_coding-intron (ENSMUSG00000019792.8, intron 12 of 12) -3493 ENSMUSG00000111211.1 ENSMUSG00000111211 ENSMUST00000214092 Gm48233 TEC Interval_99983 chr2 166229763 166230025 + 0 NA Intergenic Intergenic -21267 ENSMUSG00000085046.1 ENSMUSG00000085046 ENSMUST00000129407 Gm11467 lincRNA Interval_115826 chr4 105088504 105089448 + 0 NA intron (ENSMUSG00000028518.8, intron 1 of 8) protein_coding-intron (ENSMUSG00000028518.8, intron 1 of 8) 20914 ENSMUSG00000028518.8 ENSMUSG00000028518 ENSMUST00000030243 Prkaa2 protein_coding Interval_113658 chr4 57308461 57309177 + 0 NA Intergenic Intergenic -8444 ENSMUSG00000038764.14 ENSMUSG00000038764 ENSMUST00000151964 Ptpn3 protein_coding Interval_34249 chr11 121610674 121611311 + 0 NA intron (ENSMUSG00000039230.14, intron 8 of 9) protein_coding-intron (ENSMUSG00000039230.14, intron 37 of 38) 12676 ENSMUSG00000039230.14 ENSMUSG00000039230 ENSMUST00000151666 Tbcd protein_coding Interval_7100 chr1 125764733 125765530 + 0 NA intron (ENSMUSG00000026343.6, intron 1 of 1) protein_coding-intron (ENSMUSG00000026343.6, intron 1 of 1) -74872 ENSMUSG00000026343.6 ENSMUSG00000026343 ENSMUST00000159359 Gpr39 protein_coding Interval_38081 chr12 75546062 75546259 + 0 NA intron (ENSMUSG00000021051.10, intron 2 of 12) protein_coding-intron (ENSMUSG00000021051.10, intron 2 of 13) -33705 ENSMUSG00000112459.1 ENSMUSG00000112459 ENSMUST00000219909 Gm47689 antisense Interval_22225 chr11 7282885 7283536 + 0 NA intron (ENSMUSG00000087637.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000087637.1, intron 1 of 1) 7164 ENSMUSG00000087637.1 ENSMUSG00000087637 ENSMUST00000149481 Gm11986 lincRNA Interval_37505 chr12 69425035 69425382 + 0 NA Intergenic Intergenic 50339 ENSMUSG00000113035.1 ENSMUSG00000113035 ENSMUST00000222980 5830428M24Rik processed_transcript Interval_57174 chr15 7143947 7145305 + 0 NA intron (ENSMUSG00000054263.12, intron 1 of 15) protein_coding-intron (ENSMUSG00000054263.12, intron 1 of 19) 54012 ENSMUSG00000054263.12 ENSMUSG00000054263 ENSMUST00000171588 Lifr protein_coding Interval_128515 chr5 113762672 113762901 + 0 NA intron (ENSMUSG00000018974.7, intron 3 of 16) protein_coding-intron (ENSMUSG00000018974.7, intron 3 of 18) -4337 ENSMUSG00000105031.1 ENSMUSG00000105031 ENSMUST00000199823 Gm3511 processed_pseudogene Interval_48559 chr13 100224856 100225179 + 0 NA intron (ENSMUSG00000071203.6, intron 8 of 13) protein_coding-intron (ENSMUSG00000071203.6, intron 8 of 13) 21306 ENSMUSG00000071203.6 ENSMUSG00000071203 ENSMUST00000049789 Naip5 protein_coding Interval_140985 chr6 123819927 123820336 + 0 NA exon (ENSMUSG00000072780.3, exon 6 of 6) protein_coding-exon (ENSMUSG00000072780.3, exon 6 of 6) -11910 ENSMUSG00000088472.1 ENSMUSG00000088472 ENSMUST00000157847 Gm23079 snoRNA Interval_128988 chr5 116469687 116470488 + 0 NA intron (ENSMUSG00000063919.11, intron 6 of 12) protein_coding-intron (ENSMUSG00000063919.11, intron 6 of 12) -2499 ENSMUSG00000063919.11 ENSMUSG00000063919 ENSMUST00000201430 Srrm4 protein_coding Interval_164105 chr9 31519537 31519745 + 0 NA Intergenic Intergenic -39968 ENSMUSG00000111853.1 ENSMUSG00000111853 ENSMUST00000216695 Gm31408 lincRNA Interval_40532 chr12 105545763 105547011 + 0 NA Intergenic Intergenic -14876 ENSMUSG00000113479.1 ENSMUSG00000113479 ENSMUST00000222492 Gm47796 lincRNA Interval_34245 chr11 121577464 121577872 + 0 NA intron (ENSMUSG00000039230.14, intron 7 of 10) protein_coding-intron (ENSMUSG00000039230.14, intron 20 of 38) -20648 ENSMUSG00000039230.14 ENSMUSG00000039230 ENSMUST00000151666 Tbcd protein_coding Interval_127035 chr5 99826835 99827317 + 0 NA Intergenic Intergenic 12914 ENSMUSG00000104731.1 ENSMUSG00000104731 ENSMUST00000200464 Gm43249 processed_pseudogene Interval_168394 chr9 80013521 80013714 + 0 NA promoter-TSS (ENSMUSG00000034898.17) protein_coding-promoter-TSS (ENSMUSG00000034898.17) 9779 ENSMUSG00000111827.1 ENSMUSG00000111827 ENSMUST00000213783 Gm8131 processed_pseudogene Interval_80311 chr18 39093772 39093972 + 0 NA intron (ENSMUSG00000036452.18, intron 1 of 22) protein_coding-intron (ENSMUSG00000036452.18, intron 1 of 22) -99680 ENSMUSG00000086991.1 ENSMUSG00000086991 ENSMUST00000131421 Gm15334 antisense Interval_79966 chr18 36326961 36327186 + 0 NA Intergenic Intergenic -15507 ENSMUSG00000046727.13 ENSMUSG00000046727 ENSMUST00000144158 Cystm1 protein_coding Interval_167669 chr9 71738082 71738362 + 0 NA intron (ENSMUSG00000032232.14, intron 1 of 17) protein_coding-intron (ENSMUSG00000032232.14, intron 1 of 18) 89315 ENSMUSG00000099220.1 ENSMUSG00000099220 ENSMUST00000183453 Gm27220 processed_pseudogene Interval_101125 chr2 178178098 178178507 + 0 NA intron (ENSMUSG00000027525.18, intron 1 of 12) protein_coding-intron (ENSMUSG00000027525.18, intron 1 of 12) -99877 ENSMUSG00000078861.8 ENSMUSG00000078861 ENSMUST00000108923 Zfp931 protein_coding Interval_103584 chr3 50419244 50419857 + 0 NA intron (ENSMUSG00000027737.10, intron 5 of 11) protein_coding-intron (ENSMUSG00000027737.10, intron 5 of 11) -15267 ENSMUSG00000103907.1 ENSMUSG00000103907 ENSMUST00000193524 Gm37498 TEC Interval_52057 chr14 34936321 34936554 + 0 NA intron (ENSMUSG00000041078.7, intron 2 of 15) protein_coding-intron (ENSMUSG00000041078.7, intron 2 of 15) 41828 ENSMUSG00000065481.1 ENSMUSG00000065481 ENSMUST00000083547 Mir346 miRNA Interval_47677 chr13 91162662 91163346 + 0 NA intron (ENSMUSG00000021619.6, intron 2 of 6) protein_coding-intron (ENSMUSG00000021619.6, intron 2 of 7) -57448 ENSMUSG00000091419.2 ENSMUSG00000091419 ENSMUST00000164671 Gm17450 pseudogene Interval_157029 chr8 64621803 64622168 + 0 NA promoter-TSS (ENSMUSG00000037852.8) protein_coding-promoter-TSS (ENSMUSG00000037852.8) 12 ENSMUSG00000037852.8 ENSMUSG00000037852 ENSMUST00000211312 Cpe protein_coding Interval_148451 chr7 81337915 81338175 + 0 NA Intergenic Intergenic 7182 ENSMUSG00000061787.15 ENSMUSG00000061787 ENSMUST00000138936 Rps17 protein_coding Interval_33148 chr11 114752610 114753485 + 0 NA exon (ENSMUSG00000034706.16, exon 8 of 8) protein_coding-exon (ENSMUSG00000034706.16, exon 8 of 8) -12341 ENSMUSG00000010021.13 ENSMUSG00000010021 ENSMUST00000134165 Kif19a protein_coding Interval_91401 chr2 38560450 38561425 + 0 NA TTS (ENSMUSG00000026749.11) protein_coding-TTS (ENSMUSG00000026749.11) 5417 ENSMUSG00000107535.1 ENSMUSG00000107535 ENSMUST00000203964 Gm44183 TEC Interval_51591 chr14 30564290 30565707 + 0 NA intron (ENSMUSG00000021957.7, intron 4 of 13) protein_coding-intron (ENSMUSG00000021957.7, intron 4 of 13) -7151 ENSMUSG00000093156.1 ENSMUSG00000093156 ENSMUST00000175415 Mir3076 miRNA Interval_54273 chr14 67030769 67031218 + 0 NA intron (ENSMUSG00000022052.9, intron 3 of 9) protein_coding-intron (ENSMUSG00000022052.9, intron 3 of 9) 12536 ENSMUSG00000022052.9 ENSMUSG00000022052 ENSMUST00000225469 Ppp2r2a protein_coding Interval_105166 chr3 83080591 83081022 + 0 NA Intergenic Intergenic 12762 ENSMUSG00000027998.11 ENSMUSG00000027998 ENSMUST00000135813 Plrg1 protein_coding Interval_77466 chr17 89222830 89223059 + 0 NA Intergenic Intergenic -22269 ENSMUSG00000032937.5 ENSMUSG00000032937 ENSMUST00000035701 Fshr protein_coding Interval_93739 chr2 76377161 76377693 + 0 NA intron (ENSMUSG00000042369.8, intron 5 of 9) protein_coding-intron (ENSMUSG00000042369.8, intron 5 of 9) 7443 ENSMUSG00000042369.8 ENSMUSG00000042369 ENSMUST00000046389 Rbm45 protein_coding Interval_23502 chr11 22987507 22987716 + 0 NA Intergenic Intergenic -5521 ENSMUSG00000098650.1 ENSMUSG00000098650 ENSMUST00000160826 Commd1b protein_coding Interval_9625 chr1 160399871 160401117 + 0 NA intron (ENSMUSG00000026721.16, intron 1 of 6) protein_coding-intron (ENSMUSG00000026721.16, intron 17 of 20) 41410 ENSMUSG00000026721.16 ENSMUSG00000026721 ENSMUST00000193810 Rabgap1l protein_coding Interval_167171 chr9 65826303 65828195 + 0 NA intron (ENSMUSG00000040524.9, intron 1 of 9) protein_coding-intron (ENSMUSG00000040524.9, intron 1 of 9) -9104 ENSMUSG00000065387.1 ENSMUSG00000065387 ENSMUST00000083453 n-R5s85 rRNA Interval_30886 chr11 97059599 97061359 + 0 NA exon (ENSMUSG00000038534.19, exon 16 of 23) protein_coding-exon (ENSMUSG00000038534.19, exon 16 of 23) -3289 ENSMUSG00000098769.1 ENSMUSG00000098769 ENSMUST00000183945 Mir8103 miRNA Interval_108232 chr3 122646769 122648241 + 0 NA Intergenic Intergenic -14234 ENSMUSG00000106562.1 ENSMUSG00000106562 ENSMUST00000199912 Gm5981 processed_pseudogene Interval_63581 chr15 102175777 102176358 + 0 NA TTS (ENSMUSG00000023044.2) protein_coding-TTS (ENSMUSG00000023044.2) 12607 ENSMUSG00000023044.2 ENSMUSG00000023044 ENSMUST00000230328 Csad protein_coding Interval_7611 chr1 132503461 132503976 + 0 NA promoter-TSS (ENSMUSG00000026439.14) protein_coding-promoter-TSS (ENSMUSG00000026439.14) -3171 ENSMUSG00000048174.2 ENSMUSG00000048174 ENSMUST00000188789 Tmem81 protein_coding Interval_140788 chr6 121357882 121358402 + 0 NA promoter-TSS (ENSMUSG00000030109.15) protein_coding-promoter-TSS (ENSMUSG00000030109.15) 1322 ENSMUSG00000030109.15 ENSMUSG00000030109 ENSMUST00000170339 Slc6a12 protein_coding Interval_138422 chr6 88044536 88045794 + 0 NA promoter-TSS (ENSMUSG00000079477.9) protein_coding-promoter-TSS (ENSMUSG00000079477.9) 66 ENSMUSG00000079477.9 ENSMUSG00000079477 ENSMUST00000204126 Rab7 protein_coding Interval_152076 chr7 128834391 128835040 + 0 NA intron (ENSMUSG00000108600.1, intron 1 of 5) lincRNA-intron (ENSMUSG00000108600.1, intron 1 of 5) 8368 ENSMUSG00000080363.1 ENSMUSG00000080363 ENSMUST00000116713 Gm25778 miRNA Interval_70023 chr17 4644316 4645830 + 0 NA Intergenic Intergenic 10095 ENSMUSG00000116767.1 ENSMUSG00000116767 ENSMUST00000232624 4930517M08Rik lincRNA Interval_64258 chr16 9943794 9944259 + 0 NA intron (ENSMUSG00000059003.12, intron 3 of 13) protein_coding-intron (ENSMUSG00000059003.12, intron 1 of 11) 50897 ENSMUSG00000059003.12 ENSMUSG00000059003 ENSMUST00000197242 Grin2a protein_coding Interval_139147 chr6 96116634 96117416 + 0 NA intron (ENSMUSG00000059187.12, intron 2 of 4) protein_coding-intron (ENSMUSG00000059187.12, intron 1 of 3) 2376 ENSMUSG00000059187.12 ENSMUSG00000059187 ENSMUST00000075080 Tafa1 protein_coding Interval_32496 chr11 107900228 107901176 + 0 NA intron (ENSMUSG00000040373.12, intron 1 of 5) protein_coding-intron (ENSMUSG00000040373.12, intron 1 of 5) 10660 ENSMUSG00000040373.12 ENSMUSG00000040373 ENSMUST00000039071 Cacng5 protein_coding Interval_111851 chr4 31970186 31970767 + 0 NA intron (ENSMUSG00000028284.13, intron 1 of 15) protein_coding-intron (ENSMUSG00000028284.13, intron 1 of 16) -15191 ENSMUSG00000028284.13 ENSMUSG00000028284 ENSMUST00000131310 Map3k7 protein_coding Interval_93096 chr2 70094174 70095166 + 0 NA intron (ENSMUSG00000042064.13, intron 1 of 33) protein_coding-intron (ENSMUSG00000042064.13, intron 2 of 34) 11596 ENSMUSG00000042064.13 ENSMUSG00000042064 ENSMUST00000112241 Myo3b protein_coding Interval_126704 chr5 92148684 92149060 + 0 NA intron (ENSMUSG00000029407.10, intron 1 of 21) protein_coding-intron (ENSMUSG00000029407.10, intron 1 of 23) -7943 ENSMUSG00000084111.4 ENSMUSG00000084111 ENSMUST00000121821 Gm15710 processed_pseudogene Interval_141505 chr6 128746743 128747780 + 0 NA Intergenic Intergenic 2617 ENSMUSG00000107866.1 ENSMUSG00000107866 ENSMUST00000203128 Gm43907 processed_pseudogene Interval_62338 chr15 90457452 90457692 + 0 NA Intergenic Intergenic -103775 ENSMUSG00000078847.1 ENSMUSG00000078847 ENSMUST00000108774 Gm6746 processed_pseudogene Interval_137557 chr6 73192805 73193083 + 0 NA exon (ENSMUSG00000052861.13, exon 6 of 77) protein_coding-exon (ENSMUSG00000052861.13, exon 6 of 77) 19719 ENSMUSG00000052861.13 ENSMUSG00000052861 ENSMUST00000114038 Dnah6 protein_coding Interval_12704 chr10 4394650 4394848 + 0 NA exon (ENSMUSG00000095123.1, exon 1 of 1) lincRNA-exon (ENSMUSG00000095123.1, exon 1 of 1) 3162 ENSMUSG00000095123.1 ENSMUSG00000095123 ENSMUST00000178920 Gm21781 lincRNA Interval_32605 chr11 109100642 109101799 + 0 NA Intergenic Intergenic -34130 ENSMUSG00000064691.1 ENSMUSG00000064691 ENSMUST00000082757 Gm24149 snRNA Interval_163911 chr9 28290629 28290824 + 0 NA intron (ENSMUSG00000062257.13, intron 1 of 7) protein_coding-intron (ENSMUSG00000062257.13, intron 1 of 7) -2022 ENSMUSG00000106021.1 ENSMUSG00000106021 ENSMUST00000199274 Gm44316 miRNA Interval_59145 chr15 44805234 44805474 + 0 NA exon (ENSMUSG00000060530.2, exon 3 of 3) transcribed_processed_pseudogene-exon (ENSMUSG00000060530.2, exon 3 of 3) -17291 ENSMUSG00000022340.15 ENSMUSG00000022340 ENSMUST00000228639 Sybu protein_coding Interval_168334 chr9 78831191 78831789 + 0 NA Intergenic Intergenic -9652 ENSMUSG00000059422.5 ENSMUSG00000059422 ENSMUST00000182917 Gm8116 processed_pseudogene Interval_33128 chr11 114636050 114637055 + 0 NA Intergenic Intergenic -28056 ENSMUSG00000083769.1 ENSMUSG00000083769 ENSMUST00000120766 Gm11689 processed_pseudogene Interval_116417 chr4 111674149 111674351 + 0 NA Intergenic Intergenic -45813 ENSMUSG00000034401.16 ENSMUSG00000034401 ENSMUST00000132802 Spata6 protein_coding Interval_12793 chr10 5490256 5490471 + 0 NA intron (ENSMUSG00000096054.3, intron 2 of 145) protein_coding-intron (ENSMUSG00000096054.3, intron 2 of 31) -103412 ENSMUSG00000046916.9 ENSMUSG00000046916 ENSMUST00000051809 Myct1 protein_coding Interval_120121 chr4 141957230 141958996 + 0 NA intron (ENSMUSG00000051435.11, intron 10 of 32) protein_coding-intron (ENSMUSG00000051435.11, intron 9 of 31) -18666 ENSMUSG00000081079.1 ENSMUSG00000081079 ENSMUST00000119881 Gm13059 processed_pseudogene Interval_144836 chr7 28538796 28539745 + 0 NA intron (ENSMUSG00000109336.1, intron 1 of 12) protein_coding-intron (ENSMUSG00000109336.1, intron 1 of 12) -1615 ENSMUSG00000084174.3 ENSMUSG00000084174 ENSMUST00000119180 Sycn protein_coding Interval_96229 chr2 120730644 120732290 + 0 NA promoter-TSS (ENSMUSG00000027284.16) protein_coding-promoter-TSS (ENSMUSG00000027284.16) -2829 ENSMUSG00000027284.16 ENSMUSG00000027284 ENSMUST00000136725 Cdan1 protein_coding Interval_98656 chr2 153892093 153892285 + 0 NA intron (ENSMUSG00000027481.2, intron 14 of 15) protein_coding-intron (ENSMUSG00000027481.2, intron 14 of 15) -8206 ENSMUSG00000068009.11 ENSMUSG00000068009 ENSMUST00000135501 Bpifb6 protein_coding Interval_4298 chr1 72534617 72535056 + 0 NA exon (ENSMUSG00000039372.5, exon 1 of 4) protein_coding-exon (ENSMUSG00000039372.5, exon 1 of 4) 2094 ENSMUSG00000039372.5 ENSMUSG00000039372 ENSMUST00000047786 Marchf4 protein_coding Interval_43431 chr13 30787309 30788364 + 0 NA exon (ENSMUSG00000113515.1, exon 2 of 2) lincRNA-exon (ENSMUSG00000113515.1, exon 2 of 2) 7390 ENSMUSG00000113515.1 ENSMUSG00000113515 ENSMUST00000222202 Gm29675 lincRNA Interval_169544 chr9 99012722 99013246 + 0 NA intron (ENSMUSG00000044860.9, intron 5 of 7) protein_coding-intron (ENSMUSG00000044860.9, intron 5 of 7) 22731 ENSMUSG00000044860.9 ENSMUSG00000044860 ENSMUST00000076730 Gm1123 protein_coding Interval_131012 chr5 134544738 134545519 + 0 NA intron (ENSMUSG00000063146.11, intron 1 of 16) protein_coding-intron (ENSMUSG00000063146.11, intron 1 of 15) -6929 ENSMUSG00000107090.1 ENSMUSG00000107090 ENSMUST00000200729 Gm42884 antisense Interval_138571 chr6 89426080 89426685 + 0 NA intron (ENSMUSG00000030086.16, intron 4 of 6) protein_coding-intron (ENSMUSG00000030086.16, intron 5 of 7) 81242 ENSMUSG00000107570.1 ENSMUSG00000107570 ENSMUST00000204568 Gm44207 TEC Interval_114365 chr4 74323123 74323337 + 0 NA intron (ENSMUSG00000028397.13, intron 7 of 7) protein_coding-intron (ENSMUSG00000028397.13, intron 8 of 21) 60421 ENSMUSG00000028397.13 ENSMUSG00000028397 ENSMUST00000150439 Kdm4c protein_coding Interval_164121 chr9 31669319 31669516 + 0 NA Intergenic Intergenic 8609 ENSMUSG00000110853.1 ENSMUSG00000110853 ENSMUST00000217207 Gm47436 lincRNA Interval_93138 chr2 70541573 70541871 + 0 NA TTS (ENSMUSG00000075302.10) protein_coding-TTS (ENSMUSG00000075302.10) -17955 ENSMUSG00000104076.1 ENSMUSG00000104076 ENSMUST00000191917 Gm37026 TEC Interval_171925 chr9 122615043 122615739 + 0 NA intron (ENSMUSG00000097736.8, intron 2 of 3) lincRNA-intron (ENSMUSG00000097736.8, intron 2 of 3) 32439 ENSMUSG00000111143.1 ENSMUSG00000111143 ENSMUST00000216699 Gm47134 lincRNA Interval_26683 chr11 59674621 59675161 + 0 NA intron (ENSMUSG00000005417.17, intron 1 of 23) protein_coding-intron (ENSMUSG00000005417.17, intron 1 of 22) 64306 ENSMUSG00000044061.7 ENSMUSG00000044061 ENSMUST00000055276 Olfr225 polymorphic_pseudogene Interval_100818 chr2 172698891 172700154 + 0 NA Intergenic Intergenic 148531 ENSMUSG00000028640.11 ENSMUSG00000028640 ENSMUST00000142633 Tfap2c protein_coding Interval_29018 chr11 79928802 79929097 + 0 NA Intergenic Intergenic 22968 ENSMUSG00000082252.1 ENSMUSG00000082252 ENSMUST00000122438 Gm11204 processed_pseudogene Interval_168226 chr9 78045256 78045544 + 0 NA Intergenic Intergenic -6524 ENSMUSG00000023333.8 ENSMUSG00000023333 ENSMUST00000024104 Gcm1 protein_coding Interval_24652 chr11 35664146 35665258 + 0 NA intron (ENSMUSG00000056427.10, intron 26 of 35) protein_coding-intron (ENSMUSG00000056427.10, intron 26 of 35) 47886 ENSMUSG00000065583.1 ENSMUSG00000065583 ENSMUST00000083649 Mir218-2 miRNA Interval_104866 chr3 76515781 76516044 + 0 NA intron (ENSMUSG00000034098.14, intron 7 of 15) protein_coding-intron (ENSMUSG00000034098.14, intron 7 of 15) -30779 ENSMUSG00000103920.1 ENSMUSG00000103920 ENSMUST00000192613 Gm37897 TEC Interval_83181 chr18 82588967 82589510 + 0 NA Intergenic Intergenic 34692 ENSMUSG00000041607.17 ENSMUSG00000041607 ENSMUST00000150952 Mbp protein_coding Interval_77148 chr17 86918626 86919043 + 0 NA intron (ENSMUSG00000037689.6, intron 1 of 1) protein_coding-intron (ENSMUSG00000037689.6, intron 2 of 2) 425 ENSMUSG00000037689.6 ENSMUSG00000037689 ENSMUST00000202221 Tmem247 protein_coding Interval_138257 chr6 86655695 86655971 + 0 NA intron (ENSMUSG00000001156.9, intron 1 of 4) protein_coding-intron (ENSMUSG00000001156.9, intron 3 of 5) 9718 ENSMUSG00000108291.1 ENSMUSG00000108291 ENSMUST00000205194 Gm44292 TEC Interval_72346 chr17 29333895 29334851 + 0 NA promoter-TSS (ENSMUSG00000024012.18) protein_coding-promoter-TSS (ENSMUSG00000024012.18) 2765 ENSMUSG00000024012.18 ENSMUSG00000024012 ENSMUST00000132753 Mtch1 protein_coding Interval_54618 chr14 72158592 72159152 + 0 NA Intergenic Intergenic 27784 ENSMUSG00000064485.1 ENSMUSG00000064485 ENSMUST00000082551 Gm23735 snRNA Interval_64932 chr16 17326152 17326365 + 0 NA promoter-TSS (ENSMUSG00000041720.14) protein_coding-promoter-TSS (ENSMUSG00000041720.14) -5125 ENSMUSG00000022766.14 ENSMUSG00000022766 ENSMUST00000231884 Serpind1 protein_coding Interval_97970 chr2 146278422 146278636 + 0 NA intron (ENSMUSG00000037110.20, intron 39 of 41) protein_coding-intron (ENSMUSG00000037110.20, intron 38 of 40) 19243 ENSMUSG00000085958.1 ENSMUSG00000085958 ENSMUST00000135360 A930019D19Rik antisense Interval_137428 chr6 72201896 72202098 + 0 NA Intergenic Intergenic 33233 ENSMUSG00000037621.8 ENSMUSG00000037621 ENSMUST00000206553 Atoh8 protein_coding Interval_78416 chr18 12673704 12674482 + 0 NA intron (ENSMUSG00000024424.15, intron 1 of 13) protein_coding-intron (ENSMUSG00000024424.15, intron 1 of 13) -25674 ENSMUSG00000117573.1 ENSMUSG00000117573 ENSMUST00000234607 Gm41668 antisense Interval_120627 chr4 149759421 149760955 + 0 NA intron (ENSMUSG00000028982.9, intron 2 of 6) protein_coding-intron (ENSMUSG00000028982.9, intron 2 of 6) 11670 ENSMUSG00000085403.1 ENSMUSG00000085403 ENSMUST00000129397 Gm13068 antisense Interval_121405 chr4 155571517 155571830 + 0 NA intron (ENSMUSG00000029063.16, intron 1 of 3) protein_coding-intron (ENSMUSG00000029063.16, intron 1 of 11) -15104 ENSMUSG00000029063.16 ENSMUSG00000029063 ENSMUST00000152297 Nadk protein_coding Interval_28215 chr11 74424664 74424942 + 0 NA intron (ENSMUSG00000038807.19, intron 11 of 25) protein_coding-intron (ENSMUSG00000038807.19, intron 11 of 25) 62734 ENSMUSG00000058275.3 ENSMUSG00000058275 ENSMUST00000077794 Olfr412 protein_coding Interval_18252 chr10 84312595 84313257 + 0 NA Intergenic Intergenic 4040 ENSMUSG00000111875.1 ENSMUSG00000111875 ENSMUST00000214125 Gm5425 processed_pseudogene Interval_97106 chr2 131261883 131263497 + 0 NA promoter-TSS (ENSMUSG00000037514.17) protein_coding-promoter-TSS (ENSMUSG00000037514.17) 122 ENSMUSG00000037514.17 ENSMUSG00000037514 ENSMUST00000183349 Pank2 protein_coding Interval_21191 chr10 127131434 127132262 + 0 NA TTS (ENSMUSG00000112363.1) processed_pseudogene-TTS (ENSMUSG00000112363.1) 1648 ENSMUSG00000112363.1 ENSMUSG00000112363 ENSMUST00000218307 Gm4178 processed_pseudogene Interval_10737 chr1 173832317 173833712 + 0 NA promoter-TSS (ENSMUSG00000102187.1) unprocessed_pseudogene-promoter-TSS (ENSMUSG00000102187.1) -760 ENSMUSG00000102187.1 ENSMUSG00000102187 ENSMUST00000193981 Gm7897 unprocessed_pseudogene Interval_136558 chr6 55578577 55578766 + 0 NA Intergenic Intergenic 45165 ENSMUSG00000104746.1 ENSMUSG00000104746 ENSMUST00000196358 Gm44352 miRNA Interval_156702 chr8 57468324 57468722 + 0 NA intron (ENSMUSG00000031610.3, intron 1 of 2) protein_coding-intron (ENSMUSG00000031610.3, intron 1 of 2) 12600 ENSMUSG00000031610.3 ENSMUSG00000031610 ENSMUST00000034023 Scrg1 protein_coding Interval_38660 chr12 80890922 80891201 + 0 NA Intergenic Intergenic -20416 ENSMUSG00000065115.1 ENSMUSG00000065115 ENSMUST00000083181 Gm23298 snRNA Interval_170028 chr9 103766886 103767170 + 0 NA Intergenic Intergenic -5199 ENSMUSG00000042757.16 ENSMUSG00000042757 ENSMUST00000186455 Tmem108 protein_coding Interval_62081 chr15 86260626 86260975 + 0 NA intron (ENSMUSG00000051864.10, intron 3 of 3) protein_coding-intron (ENSMUSG00000051864.10, intron 4 of 12) 25295 ENSMUSG00000051864.10 ENSMUSG00000051864 ENSMUST00000229242 Tbc1d22a protein_coding Interval_110392 chr3 157700886 157701145 + 0 NA Intergenic Intergenic 25393 ENSMUSG00000106632.1 ENSMUSG00000106632 ENSMUST00000199819 Gm33466 lincRNA Interval_125835 chr5 74832954 74833180 + 0 NA Intergenic Intergenic -50268 ENSMUSG00000106806.1 ENSMUSG00000106806 ENSMUST00000202480 Gm17906 processed_pseudogene Interval_99195 chr2 157940706 157941594 + 0 NA intron (ENSMUSG00000037843.6, intron 3 of 3) protein_coding-intron (ENSMUSG00000037843.6, intron 3 of 3) 26497 ENSMUSG00000037843.6 ENSMUSG00000037843 ENSMUST00000109523 Vstm2l protein_coding Interval_60389 chr15 73446938 73447131 + 0 NA Intergenic Intergenic -18124 ENSMUSG00000116174.1 ENSMUSG00000116174 ENSMUST00000229262 Gm10362 processed_pseudogene Interval_157962 chr8 77343479 77344125 + 0 NA intron (ENSMUSG00000037148.8, intron 18 of 21) protein_coding-intron (ENSMUSG00000037148.8, intron 18 of 22) 11832 ENSMUSG00000109732.1 ENSMUSG00000109732 ENSMUST00000210418 Gm45285 antisense Interval_57408 chr15 10622853 10624061 + 0 NA intron (ENSMUSG00000022246.14, intron 3 of 16) protein_coding-intron (ENSMUSG00000022246.14, intron 3 of 17) 23120 ENSMUSG00000115667.1 ENSMUSG00000115667 ENSMUST00000228059 Gm10389 antisense Interval_4687 chr1 77229464 77229750 + 0 NA Intergenic Intergenic -82615 ENSMUSG00000102904.1 ENSMUSG00000102904 ENSMUST00000193479 Gm38265 TEC Interval_158341 chr8 82032833 82033540 + 0 NA exon (ENSMUSG00000037940.17, exon 16 of 23) protein_coding-exon (ENSMUSG00000037940.17, exon 16 of 23) 119596 ENSMUSG00000089147.1 ENSMUSG00000089147 ENSMUST00000158522 Gm25267 snRNA Interval_36277 chr12 40579037 40580165 + 0 NA intron (ENSMUSG00000035954.10, intron 1 of 5) protein_coding-intron (ENSMUSG00000035954.10, intron 1 of 52) 133518 ENSMUSG00000035954.10 ENSMUSG00000035954 ENSMUST00000220850 Dock4 protein_coding Interval_106501 chr3 96718870 96719660 + 0 NA exon (ENSMUSG00000028099.8, exon 7 of 15) protein_coding-exon (ENSMUSG00000028099.8, exon 7 of 15) 5135 ENSMUSG00000065669.1 ENSMUSG00000065669 ENSMUST00000083735 Gm22581 snoRNA Interval_147651 chr7 70624134 70626329 + 0 NA Intergenic Intergenic -13379 ENSMUSG00000109294.1 ENSMUSG00000109294 ENSMUST00000208887 Gm44808 lincRNA Interval_118797 chr4 133769013 133769899 + 0 NA Intergenic Intergenic 28263 ENSMUSG00000084555.1 ENSMUSG00000084555 ENSMUST00000122606 Gm25270 snRNA Interval_70464 chr17 10388542 10391105 + 0 NA Intergenic Intergenic 65221 ENSMUSG00000099384.6 ENSMUSG00000099384 ENSMUST00000188715 1700110C19Rik lincRNA Interval_86200 chr19 37719084 37719684 + 0 NA Intergenic Intergenic 4039 ENSMUSG00000117989.1 ENSMUSG00000117989 ENSMUST00000235833 Gm9066 processed_pseudogene Interval_54255 chr14 66928470 66928914 + 0 NA Intergenic Intergenic -8673 ENSMUSG00000104220.1 ENSMUSG00000104220 ENSMUST00000193416 4930578I07Rik TEC Interval_117925 chr4 127098885 127099205 + 0 NA intron (ENSMUSG00000042408.13, intron 4 of 8) protein_coding-intron (ENSMUSG00000042408.13, intron 5 of 14) 9526 ENSMUSG00000088982.1 ENSMUSG00000088982 ENSMUST00000158357 Gm25600 snRNA Interval_53902 chr14 63237214 63237409 + 0 NA intron (ENSMUSG00000021944.15, intron 2 of 6) protein_coding-intron (ENSMUSG00000021944.15, intron 2 of 6) 33813 ENSMUSG00000021944.15 ENSMUSG00000021944 ENSMUST00000156782 Gata4 protein_coding Interval_150968 chr7 116991400 116992719 + 0 NA Intergenic Intergenic -39364 ENSMUSG00000064971.1 ENSMUSG00000064971 ENSMUST00000083037 Gm26054 snRNA Interval_77511 chr17 90567373 90567691 + 0 NA exon (ENSMUSG00000093716.1, exon 1 of 1) processed_pseudogene-exon (ENSMUSG00000093716.1, exon 1 of 1) 225 ENSMUSG00000093716.1 ENSMUSG00000093716 ENSMUST00000175818 Gm19815 processed_pseudogene Interval_101379 chr2 180910969 180911893 + 0 NA TTS (ENSMUSG00000038848.14) protein_coding-TTS (ENSMUSG00000038848.14) 8956 ENSMUSG00000038848.14 ENSMUSG00000038848 ENSMUST00000124666 Ythdf1 protein_coding Interval_112400 chr4 41049171 41049382 + 0 NA promoter-TSS (ENSMUSG00000088154.1) snRNA-promoter-TSS (ENSMUSG00000088154.1) -944 ENSMUSG00000088154.1 ENSMUSG00000088154 ENSMUST00000157529 Gm25637 snRNA Interval_124614 chr5 52376251 52376446 + 0 NA exon (ENSMUSG00000045790.10, exon 12 of 12) protein_coding-exon (ENSMUSG00000045790.10, exon 12 of 12) 12557 ENSMUSG00000072941.5 ENSMUSG00000072941 ENSMUST00000101208 Sod3 protein_coding Interval_9039 chr1 153234241 153235056 + 0 NA exon (ENSMUSG00000026478.14, exon 19 of 28) protein_coding-exon (ENSMUSG00000026478.14, exon 19 of 28) 4678 ENSMUSG00000026478.14 ENSMUSG00000026478 ENSMUST00000159251 Lamc1 protein_coding Interval_174355 chrX 147536796 147537523 + 0 NA intron (ENSMUSG00000031290.14, intron 1 of 20) protein_coding-intron (ENSMUSG00000031290.14, intron 1 of 20) -24997 ENSMUSG00000031290.14 ENSMUSG00000031290 ENSMUST00000151730 Lrch2 protein_coding Interval_90492 chr2 30784251 30785212 + 0 NA Intergenic Intergenic 18913 ENSMUSG00000044320.14 ENSMUSG00000044320 ENSMUST00000140168 1700001O22Rik protein_coding Interval_36470 chr12 45385872 45386073 + 0 NA Intergenic Intergenic 26273 ENSMUSG00000089226.1 ENSMUSG00000089226 ENSMUST00000158601 Gm22076 rRNA Interval_131411 chr5 137000438 137001422 + 0 NA Intergenic Intergenic -1072 ENSMUSG00000098131.1 ENSMUSG00000098131 ENSMUST00000182608 Gm26989 unprocessed_pseudogene Interval_163951 chr9 29585817 29586574 + 0 NA intron (ENSMUSG00000059974.10, intron 1 of 2) protein_coding-intron (ENSMUSG00000059974.10, intron 1 of 7) 6315 ENSMUSG00000085638.1 ENSMUSG00000085638 ENSMUST00000141752 Gm15521 sense_intronic Interval_67479 chr16 49529120 49529471 + 0 NA Intergenic Intergenic 104489 ENSMUSG00000097959.2 ENSMUSG00000097959 ENSMUST00000183137 Gm6931 processed_pseudogene Interval_89595 chr2 23115753 23116435 + 0 NA TTS (ENSMUSG00000026781.17) protein_coding-TTS (ENSMUSG00000026781.17) 39803 ENSMUSG00000026779.6 ENSMUSG00000026779 ENSMUST00000136207 Mastl protein_coding Interval_15056 chr10 42259957 42260226 + 0 NA intron (ENSMUSG00000048756.11, intron 2 of 2) protein_coding-intron (ENSMUSG00000048756.11, intron 2 of 3) -1725 ENSMUSG00000048756.11 ENSMUSG00000048756 ENSMUST00000105501 Foxo3 protein_coding Interval_72051 chr17 27734257 27734627 + 0 NA promoter-TSS (ENSMUSG00000086485.2) lincRNA-promoter-TSS (ENSMUSG00000086485.2) -778 ENSMUSG00000086485.2 ENSMUSG00000086485 ENSMUST00000156950 Gm15458 lincRNA Interval_6129 chr1 97765715 97765948 + 0 NA intron (ENSMUSG00000040648.14, intron 1 of 30) protein_coding-intron (ENSMUSG00000040648.14, intron 1 of 27) -11568 ENSMUSG00000026333.14 ENSMUSG00000026333 ENSMUST00000189031 Gin1 protein_coding Interval_73513 chr17 38460765 38461052 + 0 NA Intergenic Intergenic -17773 ENSMUSG00000092566.1 ENSMUSG00000092566 ENSMUST00000173457 Gm20409 processed_pseudogene Interval_151375 chr7 121938607 121938870 + 0 NA intron (ENSMUSG00000034951.10, intron 11 of 16) protein_coding-intron (ENSMUSG00000034951.10, intron 11 of 16) 39510 ENSMUSG00000030873.9 ENSMUSG00000030873 ENSMUST00000206079 Scnn1b protein_coding Interval_30694 chr11 95943185 95943430 + 0 NA Intergenic Intergenic 20076 ENSMUSG00000093358.1 ENSMUSG00000093358 ENSMUST00000175617 Mir3063 miRNA Interval_102601 chr3 28216953 28217719 + 0 NA Intergenic Intergenic -28187 ENSMUSG00000103729.1 ENSMUSG00000103729 ENSMUST00000192290 Gm37098 processed_pseudogene Interval_26549 chr11 58777436 58777668 + 0 NA promoter-TSS (ENSMUSG00000056959.6) protein_coding-promoter-TSS (ENSMUSG00000056959.6) 4364 ENSMUSG00000056959.6 ENSMUSG00000056959 ENSMUST00000081533 Olfr315 protein_coding Interval_97763 chr2 143924011 143924785 + 0 NA intron (ENSMUSG00000015932.8, intron 1 of 3) protein_coding-intron (ENSMUSG00000015932.8, intron 1 of 3) 9078 ENSMUSG00000015932.8 ENSMUSG00000015932 ENSMUST00000103172 Dstn protein_coding Interval_42046 chr13 6859049 6860453 + 0 NA Intergenic Intergenic 66100 ENSMUSG00000113932.1 ENSMUSG00000113932 ENSMUST00000220700 2900024D18Rik TEC Interval_99306 chr2 158822069 158822304 + 0 NA intron (ENSMUSG00000027655.14, intron 8 of 17) protein_coding-intron (ENSMUSG00000027655.14, intron 8 of 20) -5232 ENSMUSG00000027655.14 ENSMUSG00000027655 ENSMUST00000143195 Dhx35 protein_coding Interval_57468 chr15 11416911 11417281 + 0 NA Intergenic Intergenic -17495 ENSMUSG00000022241.6 ENSMUSG00000022241 ENSMUST00000226904 Tars protein_coding Interval_80078 chr18 37335421 37336285 + 0 NA exon (ENSMUSG00000051678.4, exon 1 of 1) protein_coding-exon (ENSMUSG00000051678.4, exon 1 of 1) 1932 ENSMUSG00000051678.4 ENSMUSG00000051678 ENSMUST00000061717 Pcdhb6 protein_coding Interval_43123 chr13 24416255 24416784 + 0 NA promoter-TSS (ENSMUSG00000016756.17) protein_coding-promoter-TSS (ENSMUSG00000016756.17) 1396 ENSMUSG00000016756.17 ENSMUSG00000016756 ENSMUST00000142882 Cmah protein_coding Interval_92579 chr2 60839019 60839239 + 0 NA intron (ENSMUSG00000026970.16, intron 2 of 14) protein_coding-intron (ENSMUSG00000026970.16, intron 2 of 13) 42309 ENSMUSG00000026970.16 ENSMUSG00000026970 ENSMUST00000128866 Rbms1 protein_coding Interval_142790 chr6 145723177 145723737 + 0 NA Intergenic Intergenic 22816 ENSMUSG00000085658.1 ENSMUSG00000085658 ENSMUST00000144757 Gm15704 lincRNA Interval_52247 chr14 40995880 40996434 + 0 NA intron (ENSMUSG00000021792.15, intron 4 of 4) protein_coding-intron (ENSMUSG00000021792.15, intron 5 of 5) 8376 ENSMUSG00000021792.15 ENSMUSG00000021792 ENSMUST00000152837 Prxl2a protein_coding Interval_3962 chr1 65109380 65110500 + 0 NA exon (ENSMUSG00000044816.10, exon 6 of 8) protein_coding-exon (ENSMUSG00000044816.10, exon 6 of 8) -6580 ENSMUSG00000044429.8 ENSMUSG00000044429 ENSMUST00000061497 Cryga protein_coding Interval_122537 chr5 23651211 23652754 + 0 NA intron (ENSMUSG00000062604.11, intron 1 of 3) protein_coding-intron (ENSMUSG00000062604.11, intron 1 of 3) 22399 ENSMUSG00000088359.1 ENSMUSG00000088359 ENSMUST00000157734 Gm24009 rRNA Interval_51420 chr14 27392065 27392886 + 0 NA intron (ENSMUSG00000021895.10, intron 10 of 13) protein_coding-intron (ENSMUSG00000021895.10, intron 7 of 10) -11625 ENSMUSG00000093034.1 ENSMUSG00000093034 ENSMUST00000175293 Gm23633 miRNA Interval_160867 chr8 114342300 114342728 + 0 NA intron (ENSMUSG00000084848.1, intron 2 of 2) protein_coding-intron (ENSMUSG00000046844.6, intron 7 of 8) 8965 ENSMUSG00000084848.1 ENSMUSG00000084848 ENSMUST00000139864 4933408N05Rik antisense Interval_3309 chr1 56684280 56684824 + 0 NA Intergenic Intergenic -47117 ENSMUSG00000045336.5 ENSMUSG00000045336 ENSMUST00000062085 Hsfy2 protein_coding Interval_78348 chr18 12092674 12093284 + 0 NA intron (ENSMUSG00000049411.15, intron 3 of 3) protein_coding-intron (ENSMUSG00000049411.15, intron 3 of 12) 28501 ENSMUSG00000049411.15 ENSMUSG00000049411 ENSMUST00000234833 Tmem241 protein_coding Interval_137925 chr6 83411700 83413464 + 0 NA intron (ENSMUSG00000034832.15, intron 2 of 2) protein_coding-intron (ENSMUSG00000034832.15, intron 2 of 3) 8410 ENSMUSG00000108780.1 ENSMUSG00000108780 ENSMUST00000206080 5430434F05Rik TEC Interval_71655 chr17 25176842 25177684 + 0 NA Intergenic Intergenic -1792 ENSMUSG00000114245.1 ENSMUSG00000114245 ENSMUST00000224277 Gm38655 protein_coding Interval_53268 chr14 55702544 55704050 + 0 NA intron (ENSMUSG00000022218.16, intron 14 of 14) protein_coding-intron (ENSMUSG00000022218.16, intron 14 of 14) 10195 ENSMUSG00000022218.16 ENSMUSG00000022218 ENSMUST00000228123 Tgm1 protein_coding Interval_16267 chr10 61819738 61821475 + 0 NA Intergenic Intergenic 28605 ENSMUSG00000058806.15 ENSMUSG00000058806 ENSMUST00000153120 Col13a1 protein_coding Interval_133631 chr6 7798699 7799264 + 0 NA Intergenic Intergenic 32587 ENSMUSG00000107394.1 ENSMUSG00000107394 ENSMUST00000203458 1700012J15Rik lincRNA Interval_126023 chr5 76924213 76926227 + 0 NA intron (ENSMUSG00000029246.14, intron 4 of 11) protein_coding-intron (ENSMUSG00000029246.14, intron 3 of 9) -3388 ENSMUSG00000072852.4 ENSMUSG00000072852 ENSMUST00000145897 2310040G07Rik transcribed_unprocessed_pseudogene Interval_165663 chr9 50767694 50768815 + 0 NA promoter-TSS (ENSMUSG00000037845.14) protein_coding-promoter-TSS (ENSMUSG00000037845.14) -133 ENSMUSG00000037971.10 ENSMUSG00000037971 ENSMUST00000176160 1110032A03Rik protein_coding Interval_153598 chr8 3620965 3621966 + 0 NA promoter-TSS (ENSMUSG00000019470.12) protein_coding-promoter-TSS (ENSMUSG00000019470.12) -83 ENSMUSG00000087687.3 ENSMUSG00000087687 ENSMUST00000207389 Pet100 protein_coding Interval_47997 chr13 94955377 94956208 + 0 NA Intergenic Intergenic -46566 ENSMUSG00000113871.1 ENSMUSG00000113871 ENSMUST00000221950 Gm48349 processed_pseudogene Interval_88227 chr19 60825302 60825789 + 0 NA intron (ENSMUSG00000024993.15, intron 5 of 6) protein_coding-intron (ENSMUSG00000024993.15, intron 5 of 8) -9729 ENSMUSG00000083036.1 ENSMUSG00000083036 ENSMUST00000121724 Gm15959 processed_pseudogene Interval_123565 chr5 33511199 33512998 + 0 NA Intergenic Intergenic -74634 ENSMUSG00000107248.1 ENSMUSG00000107248 ENSMUST00000200726 Gm43851 lincRNA Interval_131509 chr5 137642973 137643176 + 0 NA TTS (ENSMUSG00000047182.6) protein_coding-TTS (ENSMUSG00000047182.6) 1740 ENSMUSG00000079165.10 ENSMUSG00000079165 ENSMUST00000177038 Sap25 protein_coding Interval_125086 chr5 64360028 64360842 + 0 NA promoter-TSS (ENSMUSG00000105730.1) lincRNA-promoter-TSS (ENSMUSG00000105730.1) -79 ENSMUSG00000105730.1 ENSMUSG00000105730 ENSMUST00000196357 Gm43838 lincRNA Interval_64726 chr16 14487662 14488062 + 0 NA Intergenic Intergenic -4116 ENSMUSG00000116439.1 ENSMUSG00000116439 ENSMUST00000231182 Gm49528 unprocessed_pseudogene Interval_15906 chr10 59121345 59121541 + 0 NA intron (ENSMUSG00000037990.18, intron 8 of 9) protein_coding-intron (ENSMUSG00000037990.18, intron 8 of 9) -74256 ENSMUSG00000088744.1 ENSMUSG00000088744 ENSMUST00000158119 Gm23223 snoRNA Interval_85026 chr19 21652310 21653810 + 0 NA promoter-TSS (ENSMUSG00000035171.9) protein_coding-promoter-TSS (ENSMUSG00000035171.9) -450 ENSMUSG00000035171.9 ENSMUSG00000035171 ENSMUST00000178781 1110059E24Rik protein_coding Interval_130057 chr5 123992846 123993038 + 0 NA intron (ENSMUSG00000000915.15, intron 7 of 31) protein_coding-intron (ENSMUSG00000000915.15, intron 7 of 31) -3910 ENSMUSG00000098454.1 ENSMUSG00000098454 ENSMUST00000185154 Mir7032 miRNA Interval_69893 chr16 97961720 97963287 + 0 NA promoter-TSS (ENSMUSG00000046962.16) protein_coding-promoter-TSS (ENSMUSG00000046962.16) 90 ENSMUSG00000046962.16 ENSMUSG00000046962 ENSMUST00000231560 Zbtb21 protein_coding Interval_57030 chr15 4697799 4698005 + 0 NA Intergenic Intergenic -68043 ENSMUSG00000022181.16 ENSMUSG00000022181 ENSMUST00000162729 C6 protein_coding Interval_75786 chr17 71363829 71364273 + 0 NA intron (ENSMUSG00000024054.14, intron 39 of 47) protein_coding-intron (ENSMUSG00000024054.14, intron 39 of 47) 4785 ENSMUSG00000102863.1 ENSMUSG00000102863 ENSMUST00000191623 Gm37639 TEC Interval_79433 chr18 31866982 31867947 + 0 NA intron (ENSMUSG00000024400.16, intron 7 of 21) protein_coding-intron (ENSMUSG00000024400.16, intron 7 of 21) 44360 ENSMUSG00000044982.7 ENSMUSG00000044982 ENSMUST00000054984 Sft2d3 protein_coding Interval_65362 chr16 21835405 21835767 + 0 NA intron (ENSMUSG00000116862.1, intron 1 of 2) protein_coding-intron (ENSMUSG00000033618.7, intron 2 of 14) 969 ENSMUSG00000116862.1 ENSMUSG00000116862 ENSMUST00000232439 Gm49607 lincRNA Interval_170931 chr9 112438822 112439036 + 0 NA intron (ENSMUSG00000110876.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000110876.1, intron 1 of 1) 22701 ENSMUSG00000110876.1 ENSMUSG00000110876 ENSMUST00000216779 4933411E02Rik lincRNA Interval_122813 chr5 25699095 25699510 + 0 NA intron (ENSMUSG00000028933.11, intron 1 of 2) protein_coding-intron (ENSMUSG00000028933.11, intron 1 of 2) 6471 ENSMUSG00000028933.11 ENSMUSG00000028933 ENSMUST00000131308 Xrcc2 protein_coding Interval_54065 chr14 64949215 64950574 + 0 NA promoter-TSS (ENSMUSG00000021972.14) protein_coding-promoter-TSS (ENSMUSG00000021972.14) -151 ENSMUSG00000021975.9 ENSMUSG00000021975 ENSMUST00000225790 Ints9 protein_coding Interval_44509 chr13 45531876 45532216 + 0 NA intron (ENSMUSG00000000253.13, intron 5 of 8) protein_coding-intron (ENSMUSG00000000253.13, intron 5 of 8) -14107 ENSMUSG00000000253.13 ENSMUSG00000000253 ENSMUST00000222227 Gmpr protein_coding Interval_615 chr1 8946548 8948549 + 0 NA intron (ENSMUSG00000025909.16, intron 3 of 20) protein_coding-intron (ENSMUSG00000025909.16, intron 3 of 19) 4874 ENSMUSG00000025909.16 ENSMUSG00000025909 ENSMUST00000126083 Sntg1 protein_coding Interval_23001 chr11 18723783 18724390 + 0 NA Intergenic Intergenic -13864 ENSMUSG00000085806.1 ENSMUSG00000085806 ENSMUST00000145182 Gm12023 lincRNA Interval_83444 chr18 85591557 85591904 + 0 NA Intergenic Intergenic 124995 ENSMUSG00000117854.1 ENSMUSG00000117854 ENSMUST00000237113 Gm7612 processed_pseudogene Interval_189 JH792828.1 269737 269988 + 0 NA NA NA NA NA Interval_136697 chr6 58101636 58102201 + 0 NA Intergenic Intergenic 6249 ENSMUSG00000107530.1 ENSMUSG00000107530 ENSMUST00000204747 Vmn1r-ps16 unprocessed_pseudogene Interval_171447 chr9 118404783 118407409 + 0 NA promoter-TSS (ENSMUSG00000098161.1) lincRNA-promoter-TSS (ENSMUSG00000098161.1) 3 ENSMUSG00000098161.1 ENSMUSG00000098161 ENSMUST00000182885 Platr11 lincRNA Interval_144840 chr7 28548411 28549566 + 0 NA intron (ENSMUSG00000109336.1, intron 1 of 12) protein_coding-intron (ENSMUSG00000109336.1, intron 1 of 12) -1734 ENSMUSG00000047586.4 ENSMUSG00000047586 ENSMUST00000057974 Nccrp1 protein_coding Interval_8509 chr1 140398311 140398478 + 0 NA intron (ENSMUSG00000052726.16, intron 8 of 27) protein_coding-intron (ENSMUSG00000052726.16, intron 8 of 26) 131907 ENSMUSG00000102698.1 ENSMUSG00000102698 ENSMUST00000195546 Gm37777 TEC Interval_22792 chr11 15723697 15724021 + 0 NA Intergenic Intergenic 241553 ENSMUSG00000083292.1 ENSMUSG00000083292 ENSMUST00000122400 Gm12010 processed_pseudogene Interval_159157 chr8 91169983 91170685 + 0 NA intron (ENSMUSG00000031667.16, intron 1 of 3) protein_coding-intron (ENSMUSG00000031667.16, intron 1 of 3) 9818 ENSMUSG00000110106.1 ENSMUSG00000110106 ENSMUST00000211474 Gm45666 antisense Interval_160370 chr8 108788987 108789207 + 0 NA intron (ENSMUSG00000038872.10, intron 1 of 9) protein_coding-intron (ENSMUSG00000038872.10, intron 1 of 9) 51504 ENSMUSG00000104292.1 ENSMUSG00000104292 ENSMUST00000191614 Gm38042 TEC Interval_50184 chr14 8828857 8829088 + 0 NA Intergenic Intergenic -28637 ENSMUSG00000045799.6 ENSMUSG00000045799 ENSMUST00000052615 Gm9800 processed_pseudogene Interval_26025 chr11 53537195 53537734 + 0 NA TTS (ENSMUSG00000018398.18) protein_coding-TTS (ENSMUSG00000018398.18) 17537 ENSMUSG00000018398.18 ENSMUSG00000018398 ENSMUST00000145927 Septin8 protein_coding Interval_101449 chr2 181496195 181497923 + 0 NA promoter-TSS (ENSMUSG00000000827.18) protein_coding-promoter-TSS (ENSMUSG00000000827.18) -124 ENSMUSG00000000827.18 ENSMUSG00000000827 ENSMUST00000130261 Tpd52l2 protein_coding Interval_154780 chr8 23299157 23301103 + 0 NA Intergenic Intergenic -9966 ENSMUSG00000077399.1 ENSMUSG00000077399 ENSMUST00000104211 Gm24335 snoRNA Interval_4262 chr1 72229001 72229666 + 0 NA Intergenic Intergenic 3093 ENSMUSG00000094655.1 ENSMUSG00000094655 ENSMUST00000178786 Gm25360 snRNA Interval_45624 chr13 56330874 56331113 + 0 NA Intergenic Intergenic -10659 ENSMUSG00000114911.1 ENSMUSG00000114911 ENSMUST00000224089 Gm17878 processed_pseudogene Interval_55657 chr14 98400173 98400366 + 0 NA Intergenic Intergenic 119431 ENSMUSG00000115486.1 ENSMUSG00000115486 ENSMUST00000226609 Gm49017 processed_pseudogene Interval_173398 chrX 88462126 88463359 + 0 NA Intergenic Intergenic 68788 ENSMUSG00000082595.1 ENSMUSG00000082595 ENSMUST00000118739 Gm14793 processed_pseudogene Interval_62829 chr15 97281838 97282731 + 0 NA intron (ENSMUSG00000044250.8, intron 3 of 5) protein_coding-intron (ENSMUSG00000044250.8, intron 3 of 5) 20690 ENSMUSG00000116291.1 ENSMUSG00000116291 ENSMUST00000229443 Gm4383 processed_pseudogene Interval_89659 chr2 24181812 24183282 + 0 NA Intergenic Intergenic 3713 ENSMUSG00000083116.1 ENSMUSG00000083116 ENSMUST00000117058 Gm13410 processed_pseudogene Interval_126138 chr5 78474216 78474713 + 0 NA exon (ENSMUSG00000044058.8, exon 2 of 2) processed_pseudogene-exon (ENSMUSG00000044058.8, exon 2 of 2) 579 ENSMUSG00000044058.8 ENSMUSG00000044058 ENSMUST00000174153 Mthfr-ps1 processed_pseudogene Interval_17338 chr10 75967354 75968534 + 0 NA intron (ENSMUSG00000033255.8, intron 3 of 13) protein_coding-intron (ENSMUSG00000033255.8, intron 3 of 13) -1954 ENSMUSG00000082619.1 ENSMUSG00000082619 ENSMUST00000120096 Gm16219 processed_pseudogene Interval_77043 chr17 85942134 85942904 + 0 NA Intergenic Intergenic -13940 ENSMUSG00000117501.1 ENSMUSG00000117501 ENSMUST00000234707 Gm30117 lincRNA Interval_140347 chr6 116825131 116825809 + 0 NA Intergenic Intergenic -59818 ENSMUSG00000088374.1 ENSMUSG00000088374 ENSMUST00000157749 Gm22882 snoRNA Interval_35523 chr12 24294731 24294959 + 0 NA Intergenic Intergenic 13406 ENSMUSG00000114120.1 ENSMUSG00000114120 ENSMUST00000220456 Gm4120 unprocessed_pseudogene Interval_42828 chr13 20099588 20099855 + 0 NA intron (ENSMUSG00000041112.17, intron 1 of 6) protein_coding-intron (ENSMUSG00000041112.17, intron 1 of 21) -103917 ENSMUSG00000050243.6 ENSMUSG00000050243 ENSMUST00000091762 Gm5446 processed_pseudogene Interval_97594 chr2 140212439 140213004 + 0 NA Intergenic Intergenic 41691 ENSMUSG00000027384.6 ENSMUSG00000027384 ENSMUST00000125913 Ndufaf5 protein_coding Interval_59052 chr15 42627485 42628059 + 0 NA intron (ENSMUSG00000022309.9, intron 1 of 8) protein_coding-intron (ENSMUSG00000022309.9, intron 1 of 8) -48553 ENSMUSG00000097805.2 ENSMUSG00000097805 ENSMUST00000228544 Gm17473 antisense Interval_27567 chr11 68762896 68763486 + 0 NA intron (ENSMUSG00000020900.15, intron 10 of 12) protein_coding-intron (ENSMUSG00000020900.15, intron 11 of 42) 71037 ENSMUSG00000020900.15 ENSMUSG00000020900 ENSMUST00000139059 Myh10 protein_coding Interval_141897 chr6 135209180 135210071 + 0 NA TTS (ENSMUSG00000030207.15) protein_coding-TTS (ENSMUSG00000030207.15) 21145 ENSMUSG00000108239.1 ENSMUSG00000108239 ENSMUST00000204330 Gm19434 antisense Interval_86285 chr19 38389761 38390291 + 0 NA Intergenic Intergenic -1923 ENSMUSG00000118335.1 ENSMUSG00000118335 ENSMUST00000235630 Gm18936 processed_pseudogene Interval_14768 chr10 39698176 39698942 + 0 NA intron (ENSMUSG00000087177.7, intron 1 of 1) antisense-intron (ENSMUSG00000087177.7, intron 1 of 3) 33447 ENSMUSG00000087177.7 ENSMUSG00000087177 ENSMUST00000153113 E130307A14Rik antisense Interval_54179 chr14 66008807 66009523 + 0 NA promoter-TSS (ENSMUSG00000034450.8) protein_coding-promoter-TSS (ENSMUSG00000034450.8) 42 ENSMUSG00000034450.8 ENSMUSG00000034450 ENSMUST00000059970 Gulo protein_coding Interval_16459 chr10 62993625 62995088 + 0 NA intron (ENSMUSG00000020070.18, intron 6 of 18) protein_coding-intron (ENSMUSG00000020070.18, intron 6 of 10) -4423 ENSMUSG00000084985.1 ENSMUSG00000084985 ENSMUST00000129470 Gm16135 antisense Interval_171675 chr9 120080780 120081527 + 0 NA Intergenic Intergenic -10961 ENSMUSG00000042262.5 ENSMUSG00000042262 ENSMUST00000048777 Ccr8 protein_coding Interval_6209 chr1 101825067 101825246 + 0 NA Intergenic Intergenic 55585 ENSMUSG00000100349.1 ENSMUSG00000100349 ENSMUST00000190483 Gm28188 processed_pseudogene Interval_110944 chr4 10690848 10691114 + 0 NA intron (ENSMUSG00000086080.7, intron 1 of 3) lincRNA-intron (ENSMUSG00000086080.7, intron 1 of 3) 106830 ENSMUSG00000086080.7 ENSMUSG00000086080 ENSMUST00000141312 1700123O12Rik lincRNA Interval_25523 chr11 49536512 49536890 + 0 NA TTS (ENSMUSG00000063827.2) protein_coding-TTS (ENSMUSG00000063827.2) -6748 ENSMUSG00000095187.2 ENSMUSG00000095187 ENSMUST00000167248 Olfr1381 protein_coding Interval_120966 chr4 151977435 151978236 + 0 NA TTS (ENSMUSG00000039768.16) protein_coding-TTS (ENSMUSG00000039768.16) -1149 ENSMUSG00000039768.16 ENSMUSG00000039768 ENSMUST00000124955 Dnajc11 protein_coding Interval_22380 chr11 9273138 9273395 + 0 NA intron (ENSMUSG00000004668.14, intron 10 of 61) protein_coding-intron (ENSMUSG00000004668.14, intron 10 of 61) 79815 ENSMUSG00000004668.14 ENSMUSG00000004668 ENSMUST00000151522 Abca13 protein_coding Interval_101414 chr2 181153862 181154122 + 0 NA intron (ENSMUSG00000016349.10, intron 2 of 7) protein_coding-intron (ENSMUSG00000016349.10, intron 2 of 7) 3022 ENSMUSG00000016349.10 ENSMUSG00000016349 ENSMUST00000055990 Eef1a2 protein_coding Interval_42308 chr13 11957051 11957811 + 0 NA intron (ENSMUSG00000021313.16, intron 1 of 2) protein_coding-intron (ENSMUSG00000021313.16, intron 1 of 104) 17873 ENSMUSG00000098110.1 ENSMUSG00000098110 ENSMUST00000182176 Gm26956 processed_pseudogene Interval_22374 chr11 9244768 9245268 + 0 NA intron (ENSMUSG00000004668.14, intron 3 of 5) protein_coding-intron (ENSMUSG00000004668.14, intron 3 of 61) 51567 ENSMUSG00000004668.14 ENSMUSG00000004668 ENSMUST00000151522 Abca13 protein_coding Interval_115898 chr4 106021338 106022094 + 0 NA Intergenic Intergenic -45831 ENSMUSG00000089065.1 ENSMUSG00000089065 ENSMUST00000158440 Gm24363 misc_RNA Interval_6139 chr1 97929114 97929593 + 0 NA intron (ENSMUSG00000026335.16, intron 4 of 23) protein_coding-intron (ENSMUSG00000026335.16, intron 5 of 25) -7047 ENSMUSG00000089169.1 ENSMUSG00000089169 ENSMUST00000158544 Gm25413 misc_RNA Interval_166974 chr9 64266916 64269170 + 0 NA Intergenic Intergenic -13560 ENSMUSG00000032397.7 ENSMUSG00000032397 ENSMUST00000034964 Tipin protein_coding Interval_19163 chr10 95242089 95242435 + 0 NA intron (ENSMUSG00000045867.10, intron 2 of 2) protein_coding-intron (ENSMUSG00000045867.10, intron 2 of 2) 72591 ENSMUSG00000112744.1 ENSMUSG00000112744 ENSMUST00000219461 Gm48880 TEC Interval_54104 chr14 65331737 65332758 + 0 NA intron (ENSMUSG00000114209.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000114209.1, intron 1 of 1) 5916 ENSMUSG00000114209.1 ENSMUSG00000114209 ENSMUST00000223901 Gm48433 lincRNA Interval_54061 chr14 64868639 64868962 + 0 NA intron (ENSMUSG00000021972.14, intron 3 of 9) protein_coding-intron (ENSMUSG00000021972.14, intron 4 of 10) -29541 ENSMUSG00000102764.1 ENSMUSG00000102764 ENSMUST00000191712 Gm37183 TEC Interval_38215 chr12 76403297 76404800 + 0 NA promoter-TSS (ENSMUSG00000059970.7) protein_coding-promoter-TSS (ENSMUSG00000059970.7) -66 ENSMUSG00000097323.2 ENSMUSG00000097323 ENSMUST00000180709 4930426I24Rik lincRNA Interval_37843 chr12 72453430 72453632 + 0 NA intron (ENSMUSG00000021090.16, intron 6 of 32) protein_coding-intron (ENSMUSG00000021090.16, intron 6 of 6) 11496 ENSMUSG00000021090.16 ENSMUSG00000021090 ENSMUST00000221282 Lrrc9 protein_coding Interval_144733 chr7 27862444 27863148 + 0 NA intron (ENSMUSG00000020420.8, intron 3 of 5) protein_coding-intron (ENSMUSG00000020420.8, intron 1 of 3) 5269 ENSMUSG00000020420.8 ENSMUSG00000020420 ENSMUST00000053722 Zfp607a protein_coding Interval_68795 chr16 86789641 86789917 + 0 NA intron (ENSMUSG00000116993.1, intron 4 of 5) lincRNA-intron (ENSMUSG00000116993.1, intron 4 of 5) 16585 ENSMUSG00000116993.1 ENSMUSG00000116993 ENSMUST00000232333 Gm32461 lincRNA Interval_32525 chr11 108150430 108150644 + 0 NA intron (ENSMUSG00000050965.14, intron 3 of 16) protein_coding-intron (ENSMUSG00000050965.14, intron 3 of 16) -31313 ENSMUSG00000084978.1 ENSMUSG00000084978 ENSMUST00000153899 Gm11655 antisense Interval_38183 chr12 76233894 76235275 + 0 NA intron (ENSMUSG00000021056.8, intron 3 of 3) protein_coding-intron (ENSMUSG00000021056.8, intron 3 of 9) -5120 ENSMUSG00000021056.8 ENSMUSG00000021056 ENSMUST00000219327 Tex21 protein_coding Interval_55470 chr14 87640627 87641028 + 0 NA Intergenic Intergenic -3357 ENSMUSG00000115608.1 ENSMUSG00000115608 ENSMUST00000228615 Gm48922 processed_pseudogene Interval_94535 chr2 91989944 91990175 + 0 NA intron (ENSMUSG00000027230.9, intron 8 of 11) protein_coding-intron (ENSMUSG00000027230.9, intron 8 of 11) -24459 ENSMUSG00000040479.12 ENSMUSG00000040479 ENSMUST00000126473 Dgkz protein_coding Interval_141236 chr6 126162797 126165008 + 0 NA intron (ENSMUSG00000049107.13, intron 1 of 1) protein_coding-intron (ENSMUSG00000049107.13, intron 1 of 1) 1058 ENSMUSG00000049107.13 ENSMUSG00000049107 ENSMUST00000050484 Ntf3 protein_coding Interval_75506 chr17 67613491 67613765 + 0 NA intron (ENSMUSG00000117029.1, intron 2 of 2) lincRNA-intron (ENSMUSG00000117029.1, intron 2 of 2) 15704 ENSMUSG00000117029.1 ENSMUSG00000117029 ENSMUST00000233130 Gm36201 lincRNA Interval_171035 chr9 113846144 113846410 + 0 NA intron (ENSMUSG00000033392.16, intron 6 of 34) protein_coding-intron (ENSMUSG00000033392.16, intron 5 of 32) -69979 ENSMUSG00000087992.1 ENSMUSG00000087992 ENSMUST00000157367 Gm25059 snoRNA Interval_168138 chr9 77469900 77470751 + 0 NA intron (ENSMUSG00000032352.16, intron 3 of 13) protein_coding-intron (ENSMUSG00000032352.16, intron 3 of 13) -70907 ENSMUSG00000099170.1 ENSMUSG00000099170 ENSMUST00000183878 5730403I07Rik lincRNA Interval_103001 chr3 34148133 34148701 + 0 NA intron (ENSMUSG00000105265.4, intron 1 of 3) processed_transcript-intron (ENSMUSG00000105265.4, intron 1 of 3) -34890 ENSMUSG00000105739.1 ENSMUSG00000105739 ENSMUST00000196289 Gm5708 processed_pseudogene Interval_116914 chr4 118206885 118207924 + 0 NA TTS (ENSMUSG00000033295.14) protein_coding-TTS (ENSMUSG00000033295.14) 3160 ENSMUSG00000098596.1 ENSMUSG00000098596 ENSMUST00000184953 Mir7226 miRNA Interval_64727 chr16 14493467 14494436 + 0 NA Intergenic Intergenic -8149 ENSMUSG00000090808.3 ENSMUSG00000090808 ENSMUST00000164528 Gm1758 unprocessed_pseudogene Interval_53139 chr14 54676444 54676700 + 0 NA intron (ENSMUSG00000022185.19, intron 4 of 4) protein_coding-intron (ENSMUSG00000022185.19, intron 4 of 18) -9665 ENSMUSG00000040822.7 ENSMUSG00000040822 ENSMUST00000227269 1700123O20Rik protein_coding Interval_70007 chr17 4331673 4332787 + 0 NA Intergenic Intergenic -210128 ENSMUSG00000116615.1 ENSMUSG00000116615 ENSMUST00000231319 4930548J01Rik processed_transcript Interval_127757 chr5 107450677 107450875 + 0 NA intron (ENSMUSG00000111375.4, intron 2 of 8) protein_coding-intron (ENSMUSG00000111375.4, intron 2 of 8) 12779 ENSMUSG00000111375.4 ENSMUSG00000111375 ENSMUST00000133800 Btbd8 protein_coding Interval_78268 chr18 11058903 11059105 + 0 NA promoter-TSS (ENSMUSG00000005836.10) protein_coding-promoter-TSS (ENSMUSG00000005836.10) 5960 ENSMUSG00000005836.10 ENSMUSG00000005836 ENSMUST00000234971 Gata6 protein_coding Interval_2332 chr1 38109962 38110933 + 0 NA intron (ENSMUSG00000026082.11, intron 1 of 22) protein_coding-intron (ENSMUSG00000026082.11, intron 1 of 22) 19354 ENSMUSG00000026082.11 ENSMUSG00000026082 ENSMUST00000195383 Rev1 protein_coding Interval_160882 chr8 114541075 114541366 + 0 NA intron (ENSMUSG00000004637.15, intron 5 of 8) protein_coding-intron (ENSMUSG00000004637.15, intron 5 of 8) 53680 ENSMUSG00000090217.1 ENSMUSG00000090217 ENSMUST00000159472 Gm16116 antisense Interval_48236 chr13 97353872 97356152 + 0 NA Intergenic Intergenic -21222 ENSMUSG00000114425.1 ENSMUSG00000114425 ENSMUST00000223964 Gm33447 lincRNA Interval_136163 chr6 51600941 51601363 + 0 NA Intergenic Intergenic -20480 ENSMUSG00000094528.1 ENSMUSG00000094528 ENSMUST00000175195 Gm22914 miRNA Interval_14335 chr10 30980620 30980791 + 0 NA Intergenic Intergenic -38220 ENSMUSG00000094008.1 ENSMUSG00000094008 ENSMUST00000178825 Gm24168 snRNA Interval_156453 chr8 48378990 48379288 + 0 NA intron (ENSMUSG00000031561.16, intron 2 of 2) protein_coding-intron (ENSMUSG00000031561.16, intron 4 of 28) -108154 ENSMUSG00000110480.1 ENSMUSG00000110480 ENSMUST00000212653 Gm32842 processed_pseudogene Interval_117919 chr4 127054557 127055097 + 0 NA intron (ENSMUSG00000043872.14, intron 3 of 3) protein_coding-intron (ENSMUSG00000043872.14, intron 1 of 5) -1435 ENSMUSG00000084149.1 ENSMUSG00000084149 ENSMUST00000119262 Gm12944 processed_pseudogene Interval_119860 chr4 140547435 140548387 + 0 NA intron (ENSMUSG00000040964.16, intron 8 of 15) protein_coding-intron (ENSMUSG00000040964.16, intron 21 of 27) 69154 ENSMUSG00000040964.16 ENSMUSG00000040964 ENSMUST00000154979 Arhgef10l protein_coding Interval_132880 chr5 148481634 148482895 + 0 NA Intergenic Intergenic 25426 ENSMUSG00000106956.1 ENSMUSG00000106956 ENSMUST00000202977 Gm19617 unprocessed_pseudogene Interval_50198 chr14 9393050 9393945 + 0 NA Intergenic Intergenic -7127 ENSMUSG00000114615.1 ENSMUSG00000114615 ENSMUST00000224264 Gm48370 lincRNA Interval_53847 chr14 62716349 62716550 + 0 NA exon (ENSMUSG00000035161.7, exon 5 of 19) protein_coding-exon (ENSMUSG00000035161.7, exon 5 of 19) -11551 ENSMUSG00000035161.7 ENSMUSG00000035161 ENSMUST00000225193 Ints6 protein_coding Interval_115373 chr4 98302044 98302231 + 0 NA Intergenic Intergenic -19311 ENSMUSG00000046683.16 ENSMUSG00000046683 ENSMUST00000180374 0610025J13Rik antisense Interval_60462 chr15 73980497 73981235 + 0 NA Intergenic Intergenic 20047 ENSMUSG00000116256.1 ENSMUSG00000116256 ENSMUST00000230277 Gm32405 lincRNA Interval_24008 chr11 29392157 29393069 + 0 NA intron (ENSMUSG00000032740.17, intron 2 of 30) protein_coding-intron (ENSMUSG00000032740.17, intron 2 of 31) 18265 ENSMUSG00000032740.17 ENSMUSG00000032740 ENSMUST00000144450 Ccdc88a protein_coding Interval_91022 chr2 34444750 34445098 + 0 NA intron (ENSMUSG00000038696.14, intron 4 of 4) protein_coding-intron (ENSMUSG00000038696.14, intron 3 of 10) -8342 ENSMUSG00000083233.1 ENSMUSG00000083233 ENSMUST00000121991 Gm13406 processed_pseudogene Interval_22172 chr11 6802903 6803823 + 0 NA Intergenic Intergenic -16783 ENSMUSG00000082579.1 ENSMUSG00000082579 ENSMUST00000119629 Gm11979 processed_pseudogene Interval_87150 chr19 46470501 46472213 + 0 NA intron (ENSMUSG00000025231.17, intron 1 of 2) protein_coding-intron (ENSMUSG00000025231.17, intron 8 of 11) -43303 ENSMUSG00000025034.9 ENSMUSG00000025034 ENSMUST00000235934 Trim8 protein_coding Interval_164111 chr9 31566445 31567169 + 0 NA TTS (ENSMUSG00000110952.1) processed_pseudogene-TTS (ENSMUSG00000110952.1) 1439 ENSMUSG00000110952.1 ENSMUSG00000110952 ENSMUST00000215261 Gm18226 processed_pseudogene Interval_71857 chr17 26570712 26571082 + 0 NA intron (ENSMUSG00000001576.15, intron 1 of 9) protein_coding-intron (ENSMUSG00000001576.15, intron 1 of 8) 10030 ENSMUSG00000094969.1 ENSMUSG00000094969 ENSMUST00000178795 Gm22420 miRNA Interval_157973 chr8 77448564 77448826 + 0 NA intron (ENSMUSG00000037148.8, intron 3 of 21) protein_coding-intron (ENSMUSG00000037148.8, intron 3 of 22) -68361 ENSMUSG00000097882.2 ENSMUSG00000097882 ENSMUST00000181420 0610038B21Rik antisense Interval_83007 chr18 80324537 80324812 + 0 NA intron (ENSMUSG00000097593.2, intron 2 of 2) protein_coding-intron (ENSMUSG00000059852.7, intron 2 of 3) 1339 ENSMUSG00000097593.2 ENSMUSG00000097593 ENSMUST00000181877 Gm26676 antisense Interval_68414 chr16 76224904 76226021 + 0 NA Intergenic Intergenic 80477 ENSMUSG00000098089.2 ENSMUSG00000098089 ENSMUST00000183080 Gm26915 processed_pseudogene Interval_102231 chr3 19733916 19734227 + 0 NA Intergenic Intergenic -24751 ENSMUSG00000102261.1 ENSMUSG00000102261 ENSMUST00000194518 Gm18864 processed_pseudogene Interval_166145 chr9 57029586 57030241 + 0 NA intron (ENSMUSG00000032290.7, intron 3 of 3) protein_coding-intron (ENSMUSG00000032290.7, intron 5 of 12) 7681 ENSMUSG00000032290.7 ENSMUSG00000032290 ENSMUST00000215707 Ptpn9 protein_coding Interval_116939 chr4 118325911 118326676 + 0 NA Intergenic Intergenic -33697 ENSMUSG00000006395.16 ENSMUSG00000006395 ENSMUST00000132882 Hyi polymorphic_pseudogene Interval_137797 chr6 82594956 82595343 + 0 NA Intergenic Intergenic -84983 ENSMUSG00000107453.1 ENSMUSG00000107453 ENSMUST00000203711 Gm44145 antisense Interval_128833 chr5 115506253 115507132 + 0 NA promoter-TSS (ENSMUSG00000029528.19) protein_coding-promoter-TSS (ENSMUSG00000029528.19) -164 ENSMUSG00000029528.19 ENSMUSG00000029528 ENSMUST00000138139 Pxn protein_coding Interval_16681 chr10 67002437 67004949 + 0 NA Intergenic Intergenic -1382 ENSMUSG00000112925.1 ENSMUSG00000112925 ENSMUST00000218205 Gm31763 antisense Interval_133119 chr5 149993282 149993495 + 0 NA Intergenic Intergenic 9926 ENSMUSG00000107056.1 ENSMUSG00000107056 ENSMUST00000202470 Gm21048 processed_pseudogene Interval_97540 chr2 139589873 139590190 + 0 NA intron (ENSMUSG00000039092.9, intron 8 of 11) protein_coding-intron (ENSMUSG00000039092.9, intron 9 of 12) 1804 ENSMUSG00000098486.1 ENSMUSG00000098486 ENSMUST00000184747 Gm27385 snRNA Interval_14881 chr10 40750859 40751683 + 0 NA intron (ENSMUSG00000045555.3, intron 4 of 4) protein_coding-intron (ENSMUSG00000045555.3, intron 4 of 4) 67989 ENSMUSG00000045555.3 ENSMUSG00000045555 ENSMUST00000058747 Mettl24 protein_coding Interval_146572 chr7 46935919 46936213 + 0 NA intron (ENSMUSG00000043262.16, intron 9 of 12) protein_coding-intron (ENSMUSG00000043262.16, intron 9 of 11) -6642 ENSMUSG00000109231.1 ENSMUSG00000109231 ENSMUST00000208344 Gm45737 TEC Interval_41986 chr13 5926998 5927412 + 0 NA intron (ENSMUSG00000113017.1, intron 1 of 4) lincRNA-intron (ENSMUSG00000113757.1, intron 1 of 1) 11412 ENSMUSG00000113017.1 ENSMUSG00000113017 ENSMUST00000221291 Gm46401 lincRNA Interval_140848 chr6 122320517 122321935 + 0 NA intron (ENSMUSG00000040669.14, intron 9 of 13) protein_coding-intron (ENSMUSG00000040669.14, intron 9 of 13) 12227 ENSMUSG00000007458.14 ENSMUSG00000007458 ENSMUST00000123093 M6pr protein_coding Interval_16791 chr10 68195799 68196057 + 0 NA intron (ENSMUSG00000019947.10, intron 3 of 9) protein_coding-intron (ENSMUSG00000019947.10, intron 3 of 10) 82812 ENSMUSG00000019947.10 ENSMUSG00000019947 ENSMUST00000218425 Arid5b protein_coding Interval_92682 chr2 62491110 62491334 + 0 NA Intergenic Intergenic -10544 ENSMUSG00000000394.15 ENSMUSG00000000394 ENSMUST00000155624 Gcg protein_coding Interval_61968 chr15 85566636 85566852 + 0 NA exon (ENSMUSG00000022382.15, exon 1 of 2) protein_coding-exon (ENSMUSG00000022382.15, exon 1 of 2) 278 ENSMUSG00000022382.15 ENSMUSG00000022382 ENSMUST00000230299 Wnt7b protein_coding Interval_38111 chr12 75696924 75697124 + 0 NA Intergenic Intergenic -27497 ENSMUSG00000045690.8 ENSMUSG00000045690 ENSMUST00000187307 Wdr89 protein_coding Interval_66008 chr16 30919611 30920199 + 0 NA intron (ENSMUSG00000116581.1, intron 2 of 2) lincRNA-intron (ENSMUSG00000116581.1, intron 2 of 2) 15724 ENSMUSG00000116581.1 ENSMUSG00000116581 ENSMUST00000232539 Gm46565 lincRNA Interval_123815 chr5 35713729 35714149 + 0 NA intron (ENSMUSG00000036553.16, intron 3 of 11) protein_coding-intron (ENSMUSG00000036553.16, intron 9 of 17) -8616 ENSMUSG00000087703.1 ENSMUSG00000087703 ENSMUST00000135451 Gm15650 antisense Interval_135230 chr6 37676659 37676939 + 0 NA Intergenic Intergenic 10396 ENSMUSG00000107035.1 ENSMUSG00000107035 ENSMUST00000201305 Ybx1-ps2 processed_pseudogene Interval_34843 chr12 12580516 12582258 + 0 NA Intergenic Intergenic 88530 ENSMUSG00000118614.1 ENSMUSG00000118614 ENSMUST00000239228 AC107703.1 lincRNA Interval_133607 chr6 7554708 7557074 + 0 NA promoter-TSS (ENSMUSG00000061762.12) protein_coding-promoter-TSS (ENSMUSG00000061762.12) 1012 ENSMUSG00000061762.12 ENSMUSG00000061762 ENSMUST00000184481 Tac1 protein_coding Interval_61667 chr15 83281528 83282293 + 0 NA Intergenic Intergenic -23813 ENSMUSG00000116416.1 ENSMUSG00000116416 ENSMUST00000230161 Gm32886 processed_pseudogene Interval_124064 chr5 37962437 37962943 + 0 NA Intergenic Intergenic -21003 ENSMUSG00000107126.1 ENSMUSG00000107126 ENSMUST00000201470 Gm40289 lincRNA Interval_132651 chr5 146963102 146964281 + 0 NA promoter-TSS (ENSMUSG00000016510.11) protein_coding-promoter-TSS (ENSMUSG00000016510.11) 109 ENSMUSG00000016510.11 ENSMUSG00000016510 ENSMUST00000140526 Mtif3 protein_coding Interval_58524 chr15 35529552 35529932 + 0 NA intron (ENSMUSG00000037646.10, intron 17 of 28) protein_coding-intron (ENSMUSG00000037646.10, intron 17 of 61) -38501 ENSMUSG00000115314.1 ENSMUSG00000115314 ENSMUST00000227179 Gm48966 TEC Interval_102876 chr3 32480101 32480664 + 0 NA intron (ENSMUSG00000091091.2, intron 2 of 3) protein_coding-intron (ENSMUSG00000091091.2, intron 2 of 3) 11849 ENSMUSG00000091091.2 ENSMUSG00000091091 ENSMUST00000164954 Kcnmb3 protein_coding Interval_129845 chr5 122716948 122717469 + 0 NA intron (ENSMUSG00000029470.15, intron 2 of 10) protein_coding-intron (ENSMUSG00000029470.15, intron 2 of 11) 9628 ENSMUSG00000029470.15 ENSMUSG00000029470 ENSMUST00000139712 P2rx4 protein_coding Interval_94051 chr2 82845932 82846438 + 0 NA Intergenic Intergenic -97449 ENSMUSG00000075249.12 ENSMUSG00000075249 ENSMUST00000132967 Fsip2 protein_coding Interval_1173 chr1 16609565 16609871 + 0 NA intron (ENSMUSG00000025939.19, intron 1 of 6) protein_coding-intron (ENSMUSG00000025939.19, intron 1 of 5) -8842 ENSMUSG00000102457.1 ENSMUSG00000102457 ENSMUST00000195710 Gm38342 TEC Interval_149284 chr7 96922599 96923372 + 0 NA intron (ENSMUSG00000085560.2, intron 3 of 3) processed_transcript-intron (ENSMUSG00000085560.2, intron 2 of 3) -2883 ENSMUSG00000087980.1 ENSMUSG00000087980 ENSMUST00000157355 Gm22226 snRNA Interval_73796 chr17 43719064 43720277 + 0 NA intron (ENSMUSG00000023963.10, intron 7 of 10) protein_coding-intron (ENSMUSG00000023963.10, intron 7 of 11) 21307 ENSMUSG00000084474.1 ENSMUSG00000084474 ENSMUST00000122525 Gm25783 snRNA Interval_120329 chr4 147920940 147921623 + 0 NA promoter-TSS (ENSMUSG00000019055.15) protein_coding-promoter-TSS (ENSMUSG00000019055.15) -185 ENSMUSG00000019055.15 ENSMUSG00000019055 ENSMUST00000132075 Plod1 protein_coding Interval_117569 chr4 124710856 124711083 + 0 NA Intergenic Intergenic -3914 ENSMUSG00000028902.4 ENSMUSG00000028902 ENSMUST00000151049 Sf3a3 protein_coding Interval_145749 chr7 38027874 38029514 + 0 NA Intergenic Intergenic -5143 ENSMUSG00000030421.9 ENSMUSG00000030421 ENSMUST00000206169 Uri1 protein_coding Interval_23947 chr11 28679860 28680461 + 0 NA Intergenic Intergenic -1404 ENSMUSG00000084966.1 ENSMUSG00000084966 ENSMUST00000146554 2810471M01Rik lincRNA Interval_126925 chr5 97226278 97227724 + 0 NA Intergenic Intergenic 31415 ENSMUSG00000105850.1 ENSMUSG00000105850 ENSMUST00000199885 Gm2861 lincRNA Interval_116414 chr4 111649657 111650606 + 0 NA intron (ENSMUSG00000061298.14, intron 3 of 3) protein_coding-intron (ENSMUSG00000061298.14, intron 11 of 12) -69932 ENSMUSG00000034401.16 ENSMUSG00000034401 ENSMUST00000132802 Spata6 protein_coding Interval_152629 chr7 135537323 135538688 + 0 NA exon (ENSMUSG00000041836.10, exon 1 of 21) protein_coding-exon (ENSMUSG00000041836.10, exon 1 of 21) -9351 ENSMUSG00000050866.7 ENSMUSG00000050866 ENSMUST00000053716 Clrn3 protein_coding Interval_158041 chr8 78243115 78243425 + 0 NA intron (ENSMUSG00000037101.16, intron 2 of 10) protein_coding-intron (ENSMUSG00000037101.16, intron 5 of 13) 29920 ENSMUSG00000037101.16 ENSMUSG00000037101 ENSMUST00000124713 Ttc29 protein_coding Interval_154786 chr8 23359936 23361348 + 0 NA Intergenic Intergenic -50860 ENSMUSG00000031548.7 ENSMUSG00000031548 ENSMUST00000033952 Sfrp1 protein_coding Interval_101524 chr3 3751749 3752190 + 0 NA Intergenic Intergenic -39929 ENSMUSG00000069125.2 ENSMUSG00000069125 ENSMUST00000091375 Rps24-ps2 processed_pseudogene Interval_47585 chr13 89576718 89578144 + 0 NA exon (ENSMUSG00000094463.2, exon 1 of 1) processed_pseudogene-exon (ENSMUSG00000094463.2, exon 1 of 1) 988 ENSMUSG00000094463.2 ENSMUSG00000094463 ENSMUST00000178288 Gm8546 processed_pseudogene Interval_49906 chr13 118135339 118135766 + 0 NA Intergenic Intergenic 88232 ENSMUSG00000114713.1 ENSMUSG00000114713 ENSMUST00000225643 Gm9633 processed_pseudogene Interval_10304 chr1 168356893 168358844 + 0 NA intron (ENSMUSG00000052534.15, intron 2 of 7) protein_coding-intron (ENSMUSG00000052534.15, intron 2 of 6) -7060 ENSMUSG00000102594.1 ENSMUSG00000102594 ENSMUST00000193594 Gm38381 TEC Interval_20819 chr10 121276835 121277353 + 0 NA intron (ENSMUSG00000052302.6, intron 3 of 5) protein_coding-intron (ENSMUSG00000052302.6, intron 9 of 11) 34092 ENSMUSG00000112871.1 ENSMUSG00000112871 ENSMUST00000219186 Gm35404 lincRNA Interval_71286 chr17 21920226 21921237 + 0 NA exon (ENSMUSG00000117049.1, exon 1 of 1) processed_pseudogene-exon (ENSMUSG00000117049.1, exon 1 of 1) 441 ENSMUSG00000117049.1 ENSMUSG00000117049 ENSMUST00000233196 Gm6540 processed_pseudogene Interval_33188 chr11 115091025 115092222 + 0 NA exon (ENSMUSG00000020732.13, exon 1 of 9) protein_coding-exon (ENSMUSG00000020732.13, exon 1 of 9) -29446 ENSMUSG00000048498.7 ENSMUSG00000048498 ENSMUST00000062787 Cd300e protein_coding Interval_70051 chr17 5012499 5013062 + 0 NA intron (ENSMUSG00000069729.14, intron 1 of 19) protein_coding-intron (ENSMUSG00000069729.14, intron 1 of 18) 17841 ENSMUSG00000069729.14 ENSMUSG00000069729 ENSMUST00000146703 Arid1b protein_coding Interval_129392 chr5 119701490 119703584 + 0 NA Intergenic Intergenic -11319 ENSMUSG00000086847.1 ENSMUSG00000086847 ENSMUST00000135385 Tbx3os2 lincRNA Interval_168325 chr9 78727682 78727935 + 0 NA Intergenic Intergenic 37792 ENSMUSG00000111139.1 ENSMUSG00000111139 ENSMUST00000217312 Gm47497 processed_pseudogene Interval_54548 chr14 70617770 70618885 + 0 NA promoter-TSS (ENSMUSG00000022099.17) protein_coding-promoter-TSS (ENSMUSG00000022099.17) 10672 ENSMUSG00000022099.17 ENSMUSG00000022099 ENSMUST00000226543 Dmtn protein_coding Interval_59616 chr15 56213586 56214145 + 0 NA Intergenic Intergenic -41476 ENSMUSG00000114969.1 ENSMUSG00000114969 ENSMUST00000227090 Hba-ps3 processed_pseudogene Interval_139922 chr6 112756737 112757783 + 0 NA exon (ENSMUSG00000030257.16, exon 3 of 8) protein_coding-exon (ENSMUSG00000030257.16, exon 3 of 8) -60627 ENSMUSG00000030254.16 ENSMUSG00000030254 ENSMUST00000135092 Rad18 protein_coding Interval_149959 chr7 103766079 103766298 + 0 NA exon (ENSMUSG00000058662.4, exon 3 of 3) protein_coding-exon (ENSMUSG00000058662.4, exon 3 of 3) 5406 ENSMUSG00000058662.4 ENSMUSG00000058662 ENSMUST00000106878 Olfr69 protein_coding Interval_112540 chr4 42987083 42987378 + 0 NA intron (ENSMUSG00000028452.7, intron 1 of 1) protein_coding-intron (ENSMUSG00000028452.7, intron 7 of 16) -1409 ENSMUSG00000028452.7 ENSMUSG00000028452 ENSMUST00000148182 Vcp protein_coding Interval_72921 chr17 33513680 33514315 + 0 NA Intergenic Intergenic -10213 ENSMUSG00000024299.17 ENSMUSG00000024299 ENSMUST00000174666 Adamts10 protein_coding Interval_74010 chr17 46030488 46032949 + 0 NA promoter-TSS (ENSMUSG00000023951.18) protein_coding-promoter-TSS (ENSMUSG00000023951.18) -6854 ENSMUSG00000023951.18 ENSMUSG00000023951 ENSMUST00000146149 Vegfa protein_coding Interval_95552 chr2 112210776 112211080 + 0 NA Intergenic Intergenic -30557 ENSMUSG00000027134.4 ENSMUSG00000027134 ENSMUST00000129503 Lpcat4 protein_coding Interval_82397 chr18 73689243 73689477 + 0 NA intron (ENSMUSG00000024515.13, intron 1 of 11) protein_coding-intron (ENSMUSG00000024515.13, intron 1 of 11) -21968 ENSMUSG00000117985.1 ENSMUSG00000117985 ENSMUST00000237598 Gm32548 lincRNA Interval_114999 chr4 88308216 88308495 + 0 NA intron (ENSMUSG00000038368.16, intron 18 of 41) protein_coding-intron (ENSMUSG00000038368.16, intron 20 of 43) -91995 ENSMUSG00000038368.16 ENSMUSG00000038368 ENSMUST00000107147 Focad protein_coding Interval_11575 chr1 182856487 182856897 + 0 NA intron (ENSMUSG00000038576.15, intron 4 of 8) protein_coding-intron (ENSMUSG00000038576.15, intron 3 of 7) -51018 ENSMUSG00000102291.1 ENSMUSG00000102291 ENSMUST00000192563 Gm37542 TEC Interval_90609 chr2 31446070 31446994 + 0 NA promoter-TSS (ENSMUSG00000055632.18) protein_coding-promoter-TSS (ENSMUSG00000055632.18) -54194 ENSMUSG00000076441.9 ENSMUSG00000076441 ENSMUST00000130195 Ass1 protein_coding Interval_153555 chr8 3400057 3402035 + 0 NA intron (ENSMUSG00000004568.13, intron 1 of 3) protein_coding-intron (ENSMUSG00000004568.13, intron 1 of 19) 47609 ENSMUSG00000004568.13 ENSMUSG00000004568 ENSMUST00000145360 Arhgef18 protein_coding Interval_62419 chr15 92271244 92271534 + 0 NA intron (ENSMUSG00000055022.14, intron 15 of 23) protein_coding-intron (ENSMUSG00000055022.14, intron 15 of 23) -72970 ENSMUSG00000097068.2 ENSMUSG00000097068 ENSMUST00000181901 Gm26760 lincRNA Interval_89633 chr2 23619356 23619725 + 0 NA Intergenic Intergenic -60678 ENSMUSG00000083729.1 ENSMUSG00000083729 ENSMUST00000121498 Sh3d2c-ps1 processed_pseudogene Interval_61428 chr15 81553338 81553811 + 0 NA Intergenic Intergenic 31454 ENSMUSG00000103520.1 ENSMUSG00000103520 ENSMUST00000192082 1110025M09Rik TEC Interval_99598 chr2 163452559 163453676 + 0 NA intron (ENSMUSG00000017943.15, intron 4 of 4) protein_coding-intron (ENSMUSG00000017943.15, intron 5 of 5) 14584 ENSMUSG00000017943.15 ENSMUSG00000017943 ENSMUST00000137070 Gdap1l1 protein_coding Interval_80561 chr18 44187530 44187876 + 0 NA Intergenic Intergenic 8474 ENSMUSG00000073573.6 ENSMUSG00000073573 ENSMUST00000185266 Spink11 protein_coding Interval_96007 chr2 119127884 119128358 + 0 NA intron (ENSMUSG00000027323.10, intron 6 of 8) protein_coding-intron (ENSMUSG00000027323.10, intron 6 of 9) -3397 ENSMUSG00000027323.10 ENSMUSG00000027323 ENSMUST00000143934 Rad51 protein_coding Interval_71132 chr17 19330334 19330571 + 0 NA intron (ENSMUSG00000116670.1, intron 1 of 1) unprocessed_pseudogene-intron (ENSMUSG00000116670.1, intron 1 of 1) -31497 ENSMUSG00000090304.4 ENSMUSG00000090304 ENSMUST00000231989 Vmn2r99 protein_coding Interval_28646 chr11 77514556 77515967 + 0 NA promoter-TSS (ENSMUSG00000000686.11) protein_coding-promoter-TSS (ENSMUSG00000000686.11) 719 ENSMUSG00000044328.13 ENSMUSG00000044328 ENSMUST00000139195 Trp53i13 protein_coding Interval_87897 chr19 56964017 56964380 + 0 NA intron (ENSMUSG00000025083.18, intron 2 of 20) protein_coding-intron (ENSMUSG00000025083.18, intron 2 of 19) -26960 ENSMUSG00000025083.18 ENSMUSG00000025083 ENSMUST00000132851 Afap1l2 protein_coding Interval_126085 chr5 77277188 77277407 + 0 NA intron (ENSMUSG00000029249.15, intron 3 of 3) protein_coding-intron (ENSMUSG00000029249.15, intron 3 of 3) 4540 ENSMUSG00000093061.1 ENSMUSG00000093061 ENSMUST00000175320 Mir5098 miRNA Interval_46573 chr13 67296336 67296956 + 0 NA intron (ENSMUSG00000055341.10, intron 1 of 3) protein_coding-intron (ENSMUSG00000055341.10, intron 1 of 3) -5012 ENSMUSG00000055341.10 ENSMUSG00000055341 ENSMUST00000192242 Zfp457 protein_coding Interval_16915 chr10 69860013 69860878 + 0 NA intron (ENSMUSG00000069601.14, intron 9 of 42) protein_coding-intron (ENSMUSG00000069601.14, intron 1 of 16) -294084 ENSMUSG00000112729.1 ENSMUSG00000112729 ENSMUST00000220152 Gm46231 processed_pseudogene Interval_118358 chr4 130868395 130868898 + 0 NA Intergenic Intergenic -10766 ENSMUSG00000077381.1 ENSMUSG00000077381 ENSMUST00000104193 Gm22660 snoRNA Interval_127580 chr5 105544944 105545898 + 0 NA TTS (ENSMUSG00000054720.12) protein_coding-TTS (ENSMUSG00000054720.12) 25948 ENSMUSG00000054720.12 ENSMUSG00000054720 ENSMUST00000153754 Lrrc8c protein_coding Interval_94995 chr2 102745359 102745791 + 0 NA intron (ENSMUSG00000087185.1, intron 1 of 1) protein_coding-intron (ENSMUSG00000005089.15, intron 5 of 9) 1185 ENSMUSG00000087185.1 ENSMUSG00000087185 ENSMUST00000147082 Gm13872 antisense Interval_62429 chr15 92542781 92543744 + 0 NA intron (ENSMUSG00000036218.16, intron 1 of 2) protein_coding-intron (ENSMUSG00000036218.16, intron 3 of 9) 162693 ENSMUSG00000115858.1 ENSMUSG00000115858 ENSMUST00000230757 4930588J15Rik antisense Interval_92150 chr2 54300969 54301418 + 0 NA Intergenic Intergenic 17078 ENSMUSG00000080742.1 ENSMUSG00000080742 ENSMUST00000117596 Gm14035 processed_pseudogene Interval_88206 chr19 60657192 60658217 + 0 NA Intergenic Intergenic 46417 ENSMUSG00000117790.1 ENSMUSG00000117790 ENSMUST00000236155 Gm46652 lincRNA Interval_141111 chr6 125060987 125061803 + 0 NA promoter-TSS (ENSMUSG00000072770.9) protein_coding-promoter-TSS (ENSMUSG00000072770.9) -794 ENSMUSG00000072770.9 ENSMUSG00000072770 ENSMUST00000136100 Acrbp protein_coding Interval_161197 chr8 118487400 118487723 + 0 NA intron (ENSMUSG00000031841.19, intron 2 of 8) protein_coding-intron (ENSMUSG00000031841.19, intron 1 of 13) -60962 ENSMUSG00000064801.1 ENSMUSG00000064801 ENSMUST00000082867 Gm24035 snRNA Interval_6694 chr1 118837192 118838208 + 0 NA exon (ENSMUSG00000048402.14, exon 14 of 14) protein_coding-exon (ENSMUSG00000048402.14, exon 14 of 14) 27564 ENSMUSG00000100040.1 ENSMUSG00000100040 ENSMUST00000190981 Gm28467 processed_pseudogene Interval_117179 chr4 120277382 120277604 + 0 NA intron (ENSMUSG00000052135.8, intron 1 of 1) protein_coding-intron (ENSMUSG00000052135.8, intron 1 of 1) 9856 ENSMUSG00000052135.8 ENSMUSG00000052135 ENSMUST00000102656 Foxo6 protein_coding Interval_121723 chr5 5722379 5722579 + 0 NA Intergenic Intergenic 17922 ENSMUSG00000015652.9 ENSMUSG00000015652 ENSMUST00000169542 Steap1 protein_coding Interval_25389 chr11 47218041 47218809 + 0 NA intron (ENSMUSG00000020354.15, intron 2 of 6) protein_coding-intron (ENSMUSG00000020354.15, intron 2 of 7) -323007 ENSMUSG00000082792.1 ENSMUSG00000082792 ENSMUST00000121420 Gm12176 processed_pseudogene Interval_15328 chr10 44520313 44521116 + 0 NA intron (ENSMUSG00000038151.13, intron 1 of 3) protein_coding-intron (ENSMUSG00000038151.13, intron 1 of 3) -63504 ENSMUSG00000038151.13 ENSMUSG00000038151 ENSMUST00000167340 Prdm1 protein_coding Interval_108999 chr3 134353660 134353898 + 0 NA Intergenic Intergenic -3513 ENSMUSG00000106628.1 ENSMUSG00000106628 ENSMUST00000200155 Gm43558 TEC Interval_1357 chr1 20940180 20940934 + 0 NA TTS (ENSMUSG00000025931.15) protein_coding-TTS (ENSMUSG00000025931.15) -5154 ENSMUSG00000100929.1 ENSMUSG00000100929 ENSMUST00000185639 Gm28064 processed_pseudogene Interval_151433 chr7 122395448 122396394 + 0 NA intron (ENSMUSG00000052889.11, intron 2 of 17) protein_coding-intron (ENSMUSG00000052889.11, intron 2 of 16) -6534 ENSMUSG00000108317.1 ENSMUSG00000108317 ENSMUST00000206898 Gm44663 TEC Interval_40559 chr12 105738868 105739757 + 0 NA TTS (ENSMUSG00000041323.6) protein_coding-TTS (ENSMUSG00000041323.6) 20456 ENSMUSG00000041323.6 ENSMUSG00000041323 ENSMUST00000220702 Ak7 protein_coding Interval_133346 chr6 3535861 3536062 + 0 NA intron (ENSMUSG00000001376.17, intron 11 of 26) protein_coding-intron (ENSMUSG00000001376.17, intron 11 of 27) -47853 ENSMUSG00000107094.1 ENSMUSG00000107094 ENSMUST00000202850 Gm43294 TEC Interval_73586 chr17 40823687 40825478 + 0 NA intron (ENSMUSG00000023926.8, intron 1 of 2) protein_coding-intron (ENSMUSG00000023926.8, intron 1 of 9) 13433 ENSMUSG00000023926.8 ENSMUSG00000023926 ENSMUST00000233619 Rhag protein_coding Interval_7612 chr1 132506272 132506808 + 0 NA promoter-TSS (ENSMUSG00000048174.2) protein_coding-promoter-TSS (ENSMUSG00000048174.2) -349 ENSMUSG00000048174.2 ENSMUSG00000048174 ENSMUST00000188789 Tmem81 protein_coding Interval_123309 chr5 31295361 31296077 + 0 NA promoter-TSS (ENSMUSG00000038552.14) protein_coding-promoter-TSS (ENSMUSG00000038552.14) -286 ENSMUSG00000038552.14 ENSMUSG00000038552 ENSMUST00000201417 Fndc4 protein_coding Interval_37691 chr12 71128281 71128692 + 0 NA intron (ENSMUSG00000021079.16, intron 1 of 2) protein_coding-intron (ENSMUSG00000021079.16, intron 1 of 3) 8149 ENSMUSG00000021079.16 ENSMUSG00000021079 ENSMUST00000223544 Timm9 protein_coding Interval_114884 chr4 86694480 86695365 + 0 NA Intergenic Intergenic -36239 ENSMUSG00000028494.12 ENSMUSG00000028494 ENSMUST00000134094 Plin2 protein_coding Interval_33777 chr11 118442905 118443857 + 0 NA promoter-TSS (ENSMUSG00000017446.14) protein_coding-promoter-TSS (ENSMUSG00000017446.14) -90 ENSMUSG00000017446.14 ENSMUSG00000017446 ENSMUST00000133558 C1qtnf1 protein_coding Interval_21824 chr11 4580227 4580496 + 0 NA intron (ENSMUSG00000034354.17, intron 1 of 17) protein_coding-intron (ENSMUSG00000034354.17, intron 1 of 17) 18581 ENSMUSG00000081974.3 ENSMUSG00000081974 ENSMUST00000122068 Gm11960 transcribed_processed_pseudogene Interval_145301 chr7 31491728 31492168 + 0 NA Intergenic Intergenic 9496 ENSMUSG00000100754.1 ENSMUSG00000100754 ENSMUST00000190227 Scgb2b5-ps unprocessed_pseudogene Interval_29672 chr11 85941903 85942344 + 0 NA Intergenic Intergenic -8372 ENSMUSG00000081632.1 ENSMUSG00000081632 ENSMUST00000118790 Gm11443 processed_pseudogene Interval_112888 chr4 45826188 45827210 + 0 NA exon (ENSMUSG00000035551.6, exon 1 of 5) protein_coding-exon (ENSMUSG00000035551.6, exon 1 of 5) -10336 ENSMUSG00000035551.6 ENSMUSG00000035551 ENSMUST00000145102 Igfbpl1 protein_coding Interval_164909 chr9 43028800 43029000 + 0 NA intron (ENSMUSG00000059495.14, intron 3 of 4) protein_coding-intron (ENSMUSG00000059495.14, intron 4 of 41) -2240 ENSMUSG00000059495.14 ENSMUSG00000059495 ENSMUST00000214175 Arhgef12 protein_coding Interval_57417 chr15 10667378 10669290 + 0 NA intron (ENSMUSG00000022246.14, intron 2 of 16) protein_coding-intron (ENSMUSG00000022246.14, intron 2 of 17) 45764 ENSMUSG00000022246.14 ENSMUSG00000022246 ENSMUST00000227366 Rai14 protein_coding Interval_108677 chr3 130041261 130041476 + 0 NA promoter-TSS (ENSMUSG00000001052.15) protein_coding-promoter-TSS (ENSMUSG00000001052.15) -27044 ENSMUSG00000063328.6 ENSMUSG00000063328 ENSMUST00000076703 Gm9396 processed_pseudogene Interval_100792 chr2 172548886 172552025 + 0 NA promoter-TSS (ENSMUSG00000028640.11) protein_coding-promoter-TSS (ENSMUSG00000028640.11) -536 ENSMUSG00000028640.11 ENSMUSG00000028640 ENSMUST00000142633 Tfap2c protein_coding Interval_46360 chr13 64189758 64190054 + 0 NA intron (ENSMUSG00000033102.15, intron 14 of 14) protein_coding-intron (ENSMUSG00000033102.15, intron 14 of 14) 5403 ENSMUSG00000021476.9 ENSMUSG00000021476 ENSMUST00000223377 Habp4 protein_coding Interval_145437 chr7 34748870 34750329 + 0 NA intron (ENSMUSG00000060402.8, intron 1 of 2) protein_coding-intron (ENSMUSG00000060402.8, intron 1 of 3) 4213 ENSMUSG00000060402.8 ENSMUSG00000060402 ENSMUST00000205390 Chst8 protein_coding Interval_70199 chr17 6121240 6122860 + 0 NA TTS (ENSMUSG00000034377.10) protein_coding-TTS (ENSMUSG00000034377.10) 114 ENSMUSG00000051639.3 ENSMUSG00000051639 ENSMUST00000061073 Fbl-ps2 processed_pseudogene Interval_127381 chr5 103616833 103617762 + 0 NA intron (ENSMUSG00000029321.1, intron 3 of 5) protein_coding-intron (ENSMUSG00000029321.1, intron 3 of 5) -7174 ENSMUSG00000084126.1 ENSMUSG00000084126 ENSMUST00000118016 Gm15844 processed_pseudogene Interval_32676 chr11 109576987 109577463 + 0 NA intron (ENSMUSG00000041895.15, intron 11 of 12) protein_coding-intron (ENSMUSG00000041895.15, intron 11 of 11) 34742 ENSMUSG00000041895.15 ENSMUSG00000041895 ENSMUST00000153738 Wipi1 protein_coding Interval_153716 chr8 5093472 5094567 + 0 NA intron (ENSMUSG00000023073.2, intron 2 of 5) protein_coding-intron (ENSMUSG00000023073.2, intron 2 of 5) 11332 ENSMUSG00000023073.2 ENSMUSG00000023073 ENSMUST00000023835 Slc10a2 protein_coding Interval_55187 chr14 79140392 79141323 + 0 NA intron (ENSMUSG00000058997.8, intron 37 of 44) protein_coding-intron (ENSMUSG00000058997.8, intron 37 of 44) -3064 ENSMUSG00000058997.8 ENSMUSG00000058997 ENSMUST00000228904 Vwa8 protein_coding Interval_144590 chr7 26665706 26668698 + 0 NA intron (ENSMUSG00000040650.8, intron 8 of 8) protein_coding-intron (ENSMUSG00000040650.8, intron 8 of 8) -4051 ENSMUSG00000118648.1 ENSMUSG00000118648 ENSMUST00000239477 AC120367.1 unprocessed_pseudogene Interval_7853 chr1 134151029 134152264 + 0 NA TTS (ENSMUSG00000026450.14) protein_coding-TTS (ENSMUSG00000026450.14) -30530 ENSMUSG00000064246.10 ENSMUSG00000064246 ENSMUST00000134812 Chil1 protein_coding Interval_151599 chr7 124742048 124742308 + 0 NA Intergenic Intergenic -33243 ENSMUSG00000086254.1 ENSMUSG00000086254 ENSMUST00000130240 3100003L05Rik lincRNA Interval_7810 chr1 133857939 133858525 + 0 NA Intergenic Intergenic 23043 ENSMUSG00000100830.1 ENSMUSG00000100830 ENSMUST00000190927 Gm28441 lincRNA Interval_33108 chr11 114484398 114486278 + 0 NA Intergenic Intergenic -36478 ENSMUSG00000062391.3 ENSMUSG00000062391 ENSMUST00000141088 4932435O22Rik lincRNA Interval_146864 chr7 53936965 53938246 + 0 NA Intergenic Intergenic -45716 ENSMUSG00000099176.1 ENSMUSG00000099176 ENSMUST00000184140 Mir6238 miRNA Interval_108097 chr3 121479819 121480235 + 0 NA intron (ENSMUSG00000039865.8, intron 12 of 14) protein_coding-intron (ENSMUSG00000039865.8, intron 12 of 14) 22914 ENSMUSG00000053931.11 ENSMUSG00000053931 ENSMUST00000199499 Cnn3 protein_coding Interval_36011 chr12 33272289 33273772 + 0 NA intron (ENSMUSG00000020564.17, intron 3 of 12) protein_coding-intron (ENSMUSG00000020564.17, intron 3 of 11) -41370 ENSMUSG00000020564.17 ENSMUSG00000020564 ENSMUST00000142184 Atxn7l1 protein_coding Interval_89594 chr2 23115441 23115681 + 0 NA TTS (ENSMUSG00000026779.6) protein_coding-TTS (ENSMUSG00000026779.6) 40336 ENSMUSG00000026779.6 ENSMUSG00000026779 ENSMUST00000136207 Mastl protein_coding Interval_155425 chr8 33498472 33499137 + 0 NA Intergenic Intergenic 14608 ENSMUSG00000109750.1 ENSMUSG00000109750 ENSMUST00000210634 Hmgb1-rs17 unprocessed_pseudogene Interval_32177 chr11 105949910 105951005 + 0 NA intron (ENSMUSG00000019590.16, intron 1 of 4) protein_coding-intron (ENSMUSG00000019590.16, intron 1 of 4) -6028 ENSMUSG00000019590.16 ENSMUSG00000019590 ENSMUST00000150563 Cyb561 protein_coding Interval_93303 chr2 71796616 71797255 + 0 NA intron (ENSMUSG00000027111.16, intron 1 of 25) protein_coding-intron (ENSMUSG00000027111.16, intron 1 of 25) 9796 ENSMUSG00000027111.16 ENSMUSG00000027111 ENSMUST00000139760 Itga6 protein_coding Interval_34481 chr12 4548523 4548914 + 0 NA Intergenic Intergenic 20820 ENSMUSG00000112819.1 ENSMUSG00000112819 ENSMUST00000220320 Gm46332 lincRNA Interval_143504 chr7 11034845 11035141 + 0 NA Intergenic Intergenic 12849 ENSMUSG00000109952.1 ENSMUSG00000109952 ENSMUST00000209891 Gm45395 processed_pseudogene Interval_153334 chr7 143694164 143696430 + 0 NA promoter-TSS (ENSMUSG00000037606.18) protein_coding-promoter-TSS (ENSMUSG00000037606.18) -9425 ENSMUSG00000037613.16 ENSMUSG00000037613 ENSMUST00000208613 Tnfrsf23 protein_coding Interval_135083 chr6 35251683 35253271 + 0 NA promoter-TSS (ENSMUSG00000073155.12) protein_coding-promoter-TSS (ENSMUSG00000073155.12) -177 ENSMUSG00000073155.12 ENSMUSG00000073155 ENSMUST00000136110 1810058I24Rik protein_coding Interval_131954 chr5 141060187 141060512 + 0 NA Intergenic Intergenic -20082 ENSMUSG00000093344.1 ENSMUSG00000093344 ENSMUST00000175603 Gm26113 miRNA Interval_137333 chr6 71427558 71427910 + 0 NA intron (ENSMUSG00000002222.14, intron 2 of 8) protein_coding-intron (ENSMUSG00000002222.14, intron 2 of 8) 7373 ENSMUSG00000108211.1 ENSMUSG00000108211 ENSMUST00000205157 Gm44130 TEC Interval_54381 chr14 68082037 68085347 + 0 NA promoter-TSS (ENSMUSG00000022055.7) protein_coding-promoter-TSS (ENSMUSG00000022055.7) -171 ENSMUSG00000022055.7 ENSMUSG00000022055 ENSMUST00000022639 Nefl protein_coding Interval_64728 chr16 14508185 14508402 + 0 NA intron (ENSMUSG00000090808.3, intron 3 of 3) unprocessed_pseudogene-intron (ENSMUSG00000090808.3, intron 3 of 3) 6193 ENSMUSG00000090808.3 ENSMUSG00000090808 ENSMUST00000164528 Gm1758 unprocessed_pseudogene Interval_148626 chr7 83566021 83566312 + 0 NA Intergenic Intergenic -15910 ENSMUSG00000094841.2 ENSMUSG00000094841 ENSMUST00000208877 Gm10610 lincRNA Interval_64469 chr16 11738284 11738629 + 0 NA intron (ENSMUSG00000071669.14, intron 20 of 20) protein_coding-intron (ENSMUSG00000071669.14, intron 13 of 13) -39973 ENSMUSG00000115936.1 ENSMUSG00000115936 ENSMUST00000229695 4833415N18Rik lincRNA Interval_150423 chr7 110357827 110358023 + 0 NA intron (ENSMUSG00000038371.15, intron 25 of 39) protein_coding-intron (ENSMUSG00000038371.15, intron 26 of 40) 55924 ENSMUSG00000110102.1 ENSMUSG00000110102 ENSMUST00000210182 Gm9132 processed_pseudogene Interval_101985 chr3 14445843 14447732 + 0 NA Intergenic Intergenic -11778 ENSMUSG00000098036.1 ENSMUSG00000098036 ENSMUST00000182945 Gm8955 processed_pseudogene Interval_25926 chr11 52641847 52642607 + 0 NA Intergenic Intergenic -122407 ENSMUSG00000036264.9 ENSMUSG00000036264 ENSMUST00000036796 Fstl4 protein_coding Interval_125735 chr5 73677713 73678196 + 0 NA intron (ENSMUSG00000029155.16, intron 8 of 9) protein_coding-intron (ENSMUSG00000029155.16, intron 11 of 12) 18693 ENSMUSG00000029155.16 ENSMUSG00000029155 ENSMUST00000178631 Spata18 protein_coding Interval_87787 chr19 55870845 55871243 + 0 NA intron (ENSMUSG00000024985.20, intron 5 of 7) protein_coding-intron (ENSMUSG00000024985.20, intron 4 of 11) 29372 ENSMUSG00000099746.1 ENSMUSG00000099746 ENSMUST00000190974 Ppnr sense_intronic Interval_11760 chr1 185256987 185257235 + 0 NA intron (ENSMUSG00000039318.12, intron 18 of 34) protein_coding-intron (ENSMUSG00000039318.12, intron 18 of 34) -9222 ENSMUSG00000103613.1 ENSMUSG00000103613 ENSMUST00000193245 Gm34882 antisense Interval_33350 chr11 116064750 116065009 + 0 NA intron (ENSMUSG00000057948.12, intron 27 of 31) protein_coding-intron (ENSMUSG00000057948.12, intron 28 of 32) 12711 ENSMUSG00000057948.12 ENSMUSG00000057948 ENSMUST00000156545 Unc13d protein_coding Interval_107224 chr3 104741925 104742590 + 0 NA Intergenic Intergenic 10908 ENSMUSG00000089999.1 ENSMUSG00000089999 ENSMUST00000160676 Gm6485 transcribed_processed_pseudogene Interval_3525 chr1 59332608 59333039 + 0 NA intron (ENSMUSG00000026023.16, intron 12 of 13) protein_coding-intron (ENSMUSG00000026023.16, intron 12 of 13) 33887 ENSMUSG00000026023.16 ENSMUSG00000026023 ENSMUST00000162906 Cdk15 protein_coding Interval_47882 chr13 94141292 94142262 + 0 NA intron (ENSMUSG00000045312.12, intron 1 of 1) protein_coding-intron (ENSMUSG00000045312.12, intron 2 of 3) -1660 ENSMUSG00000087319.1 ENSMUSG00000087319 ENSMUST00000134284 Gm15907 lincRNA Interval_103120 chr3 35636944 35637595 + 0 NA intron (ENSMUSG00000105662.4, intron 11 of 18) lincRNA-intron (ENSMUSG00000105662.4, intron 1 of 3) -6305 ENSMUSG00000105662.4 ENSMUSG00000105662 ENSMUST00000196349 Gm6639 lincRNA Interval_52639 chr14 48172317 48173356 + 0 NA intron (ENSMUSG00000021846.9, intron 1 of 5) protein_coding-intron (ENSMUSG00000021846.9, intron 2 of 5) -12170 ENSMUSG00000021846.9 ENSMUSG00000021846 ENSMUST00000081029 Peli2 protein_coding Interval_74287 chr17 47909072 47909858 + 0 NA intron (ENSMUSG00000023991.16, intron 1 of 2) protein_coding-intron (ENSMUSG00000023991.16, intron 1 of 16) -12913 ENSMUSG00000085932.1 ENSMUSG00000085932 ENSMUST00000122904 Gm15556 antisense Interval_37647 chr12 70799111 70800159 + 0 NA intron (ENSMUSG00000113900.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000113900.1, intron 1 of 2) 25710 ENSMUSG00000113900.1 ENSMUSG00000113900 ENSMUST00000222338 Gm40437 lincRNA Interval_151741 chr7 126356366 126357190 + 0 NA Intergenic Intergenic -5181 ENSMUSG00000108417.1 ENSMUSG00000108417 ENSMUST00000205858 Gm30928 lincRNA Interval_114458 chr4 78793583 78793837 + 0 NA Intergenic Intergenic 96058 ENSMUSG00000083629.1 ENSMUSG00000083629 ENSMUST00000119326 Gm11262 processed_pseudogene Interval_88258 chr19 61279666 61280354 + 0 NA Intergenic Intergenic 17059 ENSMUSG00000095993.1 ENSMUSG00000095993 ENSMUST00000179346 Gm21060 protein_coding Interval_135393 chr6 38934505 38935026 + 0 NA intron (ENSMUSG00000106737.1, intron 3 of 4) protein_coding-intron (ENSMUSG00000029925.13, intron 1 of 12) -37100 ENSMUSG00000029925.13 ENSMUSG00000029925 ENSMUST00000161360 Tbxas1 protein_coding Interval_157914 chr8 75711724 75711932 + 0 NA exon (ENSMUSG00000101431.1, exon 1 of 1) processed_pseudogene-exon (ENSMUSG00000101431.1, exon 1 of 1) 1368 ENSMUSG00000101431.1 ENSMUSG00000101431 ENSMUST00000120430 Gm7901 processed_pseudogene Interval_105147 chr3 82663762 82664051 + 0 NA promoter-TSS (ENSMUSG00000102629.1) processed_transcript-promoter-TSS (ENSMUSG00000102629.1) 994 ENSMUSG00000102629.1 ENSMUSG00000102629 ENSMUST00000193554 Gm29999 processed_transcript Interval_31152 chr11 98472652 98473026 + 0 NA TTS (ENSMUSG00000084621.1) snRNA-TTS (ENSMUSG00000084621.1) 969 ENSMUSG00000084621.1 ENSMUSG00000084621 ENSMUST00000122672 Gm25106 snRNA Interval_128925 chr5 116130922 116131234 + 0 NA exon (ENSMUSG00000043913.14, exon 13 of 14) protein_coding-exon (ENSMUSG00000043913.14, exon 13 of 14) 7464 ENSMUSG00000086655.1 ENSMUSG00000086655 ENSMUST00000127792 C330018A13Rik antisense Interval_94518 chr2 91856734 91857207 + 0 NA intron (ENSMUSG00000040506.16, intron 11 of 17) protein_coding-intron (ENSMUSG00000040506.16, intron 10 of 16) 63958 ENSMUSG00000075036.1 ENSMUSG00000075036 ENSMUST00000099710 Gm10805 pseudogene Interval_147090 chr7 62432251 62432523 + 0 NA Intergenic Intergenic -9142 ENSMUSG00000108986.1 ENSMUSG00000108986 ENSMUST00000207232 Gm32061 lincRNA Interval_172083 chrX 6751664 6751984 + 0 NA Intergenic Intergenic -121660 ENSMUSG00000062393.13 ENSMUSG00000062393 ENSMUST00000145302 Dgkk protein_coding Interval_66931 chr16 38591590 38592314 + 0 NA TTS (ENSMUSG00000002845.14) protein_coding-TTS (ENSMUSG00000002845.14) -18652 ENSMUSG00000091238.1 ENSMUSG00000091238 ENSMUST00000168897 Gm17103 antisense Interval_147975 chr7 76002489 76002698 + 0 NA exon (ENSMUSG00000108495.1, exon 1 of 1) TEC-exon (ENSMUSG00000108495.1, exon 1 of 1) 1769 ENSMUSG00000108495.1 ENSMUSG00000108495 ENSMUST00000206543 Gm45139 TEC Interval_128816 chr5 115435781 115437167 + 0 NA TTS (ENSMUSG00000054256.11) protein_coding-TTS (ENSMUSG00000054256.11) 170 ENSMUSG00000107353.1 ENSMUSG00000107353 ENSMUST00000202251 4930430O22Rik antisense Interval_137300 chr6 71166703 71168333 + 0 NA Intergenic Intergenic 2719 ENSMUSG00000108206.1 ENSMUSG00000108206 ENSMUST00000204123 Gm44427 lincRNA Interval_50976 chr14 21451451 21453079 + 0 NA intron (ENSMUSG00000114875.1, intron 2 of 2) processed_transcript-intron (ENSMUSG00000114875.1, intron 2 of 2) 1791 ENSMUSG00000088873.1 ENSMUSG00000088873 ENSMUST00000158248 Gm25864 snRNA Interval_94570 chr2 92330237 92331689 + 0 NA TTS (ENSMUSG00000058318.15) protein_coding-TTS (ENSMUSG00000058318.15) 18809 ENSMUSG00000081730.1 ENSMUSG00000081730 ENSMUST00000119099 Gm13785 processed_pseudogene Interval_143166 chr7 4103548 4104034 + 0 NA intron (ENSMUSG00000086155.7, intron 3 of 8) antisense-intron (ENSMUSG00000086155.7, intron 2 of 6) 1901 ENSMUSG00000075719.1 ENSMUSG00000075719 ENSMUST00000097237 Gm23741 snRNA Interval_14506 chr10 34447056 34447678 + 0 NA Intergenic Intergenic -28899 ENSMUSG00000039480.14 ENSMUSG00000039480 ENSMUST00000099973 Nt5dc1 protein_coding Interval_127967 chr5 109944431 109944629 + 0 NA TTS (ENSMUSG00000090015.8) protein_coding-TTS (ENSMUSG00000090015.8) 4104 ENSMUSG00000090015.8 ENSMUSG00000090015 ENSMUST00000170826 Gm15446 protein_coding Interval_51192 chr14 24604470 24604883 + 0 NA intron (ENSMUSG00000048628.5, intron 2 of 4) lincRNA-intron (ENSMUSG00000048628.5, intron 2 of 4) 12791 ENSMUSG00000048628.5 ENSMUSG00000048628 ENSMUST00000062438 4930542C16Rik lincRNA Interval_74286 chr17 47903863 47905070 + 0 NA exon (ENSMUSG00000023991.16, exon 2 of 17) protein_coding-exon (ENSMUSG00000023991.16, exon 2 of 17) -17912 ENSMUSG00000085932.1 ENSMUSG00000085932 ENSMUST00000122904 Gm15556 antisense Interval_135958 chr6 49094072 49094349 + 0 NA promoter-TSS (ENSMUSG00000029814.10) protein_coding-promoter-TSS (ENSMUSG00000029814.10) 1 ENSMUSG00000029814.10 ENSMUSG00000029814 ENSMUST00000203680 Igf2bp3 protein_coding Interval_92009 chr2 52531747 52532460 + 0 NA intron (ENSMUSG00000017412.15, intron 2 of 13) protein_coding-intron (ENSMUSG00000017412.15, intron 2 of 13) -19866 ENSMUSG00000082132.1 ENSMUSG00000082132 ENSMUST00000119519 Gm13541 processed_pseudogene Interval_22559 chr11 11781824 11782032 + 0 NA Intergenic Intergenic 27034 ENSMUSG00000035455.12 ENSMUSG00000035455 ENSMUST00000150714 Fignl1 protein_coding Interval_91894 chr2 51070848 51071138 + 0 NA Intergenic Intergenic 78117 ENSMUSG00000017144.8 ENSMUSG00000017144 ENSMUST00000140864 Rnd3 protein_coding Interval_78190 chr18 9999073 9999549 + 0 NA intron (ENSMUSG00000047879.17, intron 1 of 2) protein_coding-intron (ENSMUSG00000047879.17, intron 13 of 15) 13022 ENSMUSG00000024287.8 ENSMUSG00000024287 ENSMUST00000234111 Thoc1 protein_coding Interval_15593 chr10 52027146 52028163 + 0 NA exon (ENSMUSG00000049641.15, exon 3 of 3) protein_coding-exon (ENSMUSG00000049641.15, exon 3 of 3) -4597 ENSMUSG00000092914.1 ENSMUSG00000092914 ENSMUST00000175173 Gm24084 miRNA Interval_70521 chr17 11500001 11500455 + 0 NA intron (ENSMUSG00000023826.16, intron 5 of 10) protein_coding-intron (ENSMUSG00000023826.16, intron 6 of 6) 45570 ENSMUSG00000099618.1 ENSMUSG00000099618 ENSMUST00000185957 Gm28118 processed_pseudogene Interval_140361 chr6 117180216 117180642 + 0 NA exon (ENSMUSG00000061353.11, exon 4 of 4) protein_coding-exon (ENSMUSG00000061353.11, exon 4 of 4) 11852 ENSMUSG00000061353.11 ENSMUSG00000061353 ENSMUST00000073043 Cxcl12 protein_coding Interval_172551 chrX 36597660 36600391 + 0 NA intron (ENSMUSG00000006373.10, intron 1 of 2) protein_coding-intron (ENSMUSG00000006373.10, intron 1 of 2) 819 ENSMUSG00000006373.10 ENSMUSG00000006373 ENSMUST00000073339 Pgrmc1 protein_coding Interval_98793 chr2 154992439 154992830 + 0 NA intron (ENSMUSG00000027596.10, intron 3 of 4) protein_coding-intron (ENSMUSG00000027596.10, intron 1 of 3) -20838 ENSMUSG00000027596.10 ENSMUSG00000027596 ENSMUST00000148300 a protein_coding Interval_81529 chr18 61459523 61460240 + 0 NA Intergenic Intergenic 7272 ENSMUSG00000089541.1 ENSMUSG00000089541 ENSMUST00000158916 Gm25834 snRNA Interval_3151 chr1 54039271 54039452 + 0 NA intron (ENSMUSG00000042807.15, intron 2 of 3) protein_coding-intron (ENSMUSG00000042807.15, intron 2 of 28) 115735 ENSMUSG00000102868.1 ENSMUSG00000102868 ENSMUST00000192858 Gm37633 TEC Interval_125120 chr5 64664872 64665267 + 0 NA Intergenic Intergenic -17320 ENSMUSG00000093029.1 ENSMUSG00000093029 ENSMUST00000175288 Gm25306 miRNA Interval_94513 chr2 91786340 91787214 + 0 NA intron (ENSMUSG00000040506.16, intron 7 of 7) protein_coding-intron (ENSMUSG00000040506.16, intron 7 of 16) 56595 ENSMUSG00000040506.16 ENSMUSG00000040506 ENSMUST00000142224 Ambra1 protein_coding Interval_74679 chr17 55900125 55900614 + 0 NA Intergenic Intergenic 8276 ENSMUSG00000003198.10 ENSMUSG00000003198 ENSMUST00000224294 Zfp959 protein_coding Interval_59039 chr15 41945762 41946123 + 0 NA Intergenic Intergenic -3055 ENSMUSG00000088469.1 ENSMUSG00000088469 ENSMUST00000157844 Gm24751 snoRNA Interval_40613 chr12 106031667 106032476 + 0 NA intron (ENSMUSG00000021115.15, intron 1 of 14) protein_coding-intron (ENSMUSG00000021115.15, intron 1 of 14) 6264 ENSMUSG00000021115.15 ENSMUSG00000021115 ENSMUST00000220629 Vrk1 protein_coding Interval_134398 chr6 28311559 28311801 + 0 NA intron (ENSMUSG00000039841.14, intron 2 of 6) protein_coding-intron (ENSMUSG00000039841.14, intron 2 of 6) -49748 ENSMUSG00000039841.14 ENSMUSG00000039841 ENSMUST00000155494 Zfp800 protein_coding Interval_107976 chr3 118431289 118431624 + 0 NA intron (ENSMUSG00000097311.7, intron 1 of 2) processed_transcript-intron (ENSMUSG00000097311.7, intron 1 of 2) -2401 ENSMUSG00000065569.2 ENSMUSG00000065569 ENSMUST00000083635 Mir137 miRNA Interval_126774 chr5 92817936 92818180 + 0 NA intron (ENSMUSG00000029381.16, intron 1 of 9) protein_coding-intron (ENSMUSG00000029381.16, intron 1 of 9) -29496 ENSMUSG00000089268.1 ENSMUSG00000089268 ENSMUST00000158643 Mir1961 miRNA Interval_111827 chr4 31577224 31577457 + 0 NA Intergenic Intergenic 196868 ENSMUSG00000082254.1 ENSMUSG00000082254 ENSMUST00000118967 Gm11922 processed_pseudogene Interval_128439 chr5 113323769 113325081 + 0 NA TTS (ENSMUSG00000105778.1) miRNA-TTS (ENSMUSG00000105778.1) 120 ENSMUSG00000105778.1 ENSMUSG00000105778 ENSMUST00000197062 Mir7229 miRNA Interval_69361 chr16 92465691 92466490 + 0 NA promoter-TSS (ENSMUSG00000022951.16) protein_coding-promoter-TSS (ENSMUSG00000022951.16) 8613 ENSMUSG00000116964.1 ENSMUSG00000116964 ENSMUST00000231968 Gm46555 antisense Interval_153100 chr7 141355294 141357338 + 0 NA TTS (ENSMUSG00000025504.14) protein_coding-TTS (ENSMUSG00000025504.14) 8766 ENSMUSG00000086844.1 ENSMUSG00000086844 ENSMUST00000129373 B230206H07Rik processed_transcript Interval_68929 chr16 89249075 89249289 + 0 NA Intergenic Intergenic 43321 ENSMUSG00000091039.2 ENSMUSG00000091039 ENSMUST00000169954 Krtap20-2 protein_coding Interval_23134 chr11 20106530 20106770 + 0 NA intron (ENSMUSG00000020152.7, intron 1 of 1) protein_coding-intron (ENSMUSG00000020152.7, intron 1 of 8) 6259 ENSMUSG00000020152.7 ENSMUSG00000020152 ENSMUST00000134779 Actr2 protein_coding Interval_101683 chr3 8923216 8924189 + 0 NA exon (ENSMUSG00000040269.5, exon 1 of 3) protein_coding-exon (ENSMUSG00000040269.5, exon 1 of 3) 216 ENSMUSG00000040269.5 ENSMUSG00000040269 ENSMUST00000042148 Mrps28 protein_coding Interval_153066 chr7 141148330 141149401 + 0 NA intron (ENSMUSG00000025495.15, intron 4 of 7) protein_coding-intron (ENSMUSG00000025495.15, intron 4 of 11) 16415 ENSMUSG00000025495.15 ENSMUSG00000025495 ENSMUST00000209928 Ptdss2 protein_coding Interval_47721 chr13 91776875 91777603 + 0 NA intron (ENSMUSG00000021620.4, intron 11 of 14) protein_coding-intron (ENSMUSG00000021620.4, intron 11 of 14) 23756 ENSMUSG00000021621.15 ENSMUSG00000021621 ENSMUST00000179368 Zcchc9 protein_coding Interval_105053 chr3 80355459 80356029 + 0 NA Intergenic Intergenic -21149 ENSMUSG00000102379.1 ENSMUSG00000102379 ENSMUST00000193516 Gm37971 lincRNA Interval_114730 chr4 84527180 84529029 + 0 NA intron (ENSMUSG00000028487.18, intron 1 of 3) protein_coding-intron (ENSMUSG00000028487.18, intron 3 of 7) -98980 ENSMUSG00000083743.1 ENSMUSG00000083743 ENSMUST00000119071 Gm12421 processed_pseudogene Interval_98256 chr2 150549042 150549860 + 0 NA Intergenic Intergenic -20964 ENSMUSG00000068129.5 ENSMUSG00000068129 ENSMUST00000089200 Cst7 protein_coding Interval_111564 chr4 23518832 23519419 + 0 NA promoter-TSS (ENSMUSG00000082876.1) processed_pseudogene-promoter-TSS (ENSMUSG00000082876.1) -685 ENSMUSG00000082876.1 ENSMUSG00000082876 ENSMUST00000118402 Gm11889 processed_pseudogene Interval_163412 chr9 21329889 21330323 + 0 NA intron (ENSMUSG00000057193.8, intron 1 of 21) protein_coding-intron (ENSMUSG00000057193.8, intron 1 of 8) 9408 ENSMUSG00000057193.8 ENSMUSG00000057193 ENSMUST00000213535 Slc44a2 protein_coding Interval_70301 chr17 8339699 8342011 + 0 NA exon (ENSMUSG00000055945.8, exon 1 of 2) protein_coding-exon (ENSMUSG00000055945.8, exon 1 of 2) 3396 ENSMUSG00000055945.8 ENSMUSG00000055945 ENSMUST00000163887 Prr18 protein_coding Interval_35458 chr12 22705977 22706319 + 0 NA Intergenic Intergenic -7261 ENSMUSG00000113413.1 ENSMUSG00000113413 ENSMUST00000221121 Gm21941 unprocessed_pseudogene Interval_142647 chr6 144648164 144649488 + 0 NA intron (ENSMUSG00000041540.16, intron 1 of 6) protein_coding-intron (ENSMUSG00000041540.16, intron 1 of 13) 23894 ENSMUSG00000072677.4 ENSMUSG00000072677 ENSMUST00000144026 Sox5it sense_intronic Interval_9233 chr1 155293565 155293773 + 0 NA intron (ENSMUSG00000026469.14, intron 10 of 13) protein_coding-intron (ENSMUSG00000026469.14, intron 11 of 14) -1642 ENSMUSG00000026469.14 ENSMUSG00000026469 ENSMUST00000143529 Xpr1 protein_coding Interval_84550 chr19 12706714 12706921 + 0 NA intron (ENSMUSG00000084981.7, intron 3 of 3) protein_coding-intron (ENSMUSG00000024694.9, intron 1 of 5) 11003 ENSMUSG00000024694.9 ENSMUSG00000024694 ENSMUST00000154822 Keg1 protein_coding Interval_15944 chr10 59538906 59540153 + 0 NA intron (ENSMUSG00000009647.13, intron 3 of 3) protein_coding-intron (ENSMUSG00000009647.13, intron 1 of 7) -76535 ENSMUSG00000071280.2 ENSMUSG00000071280 ENSMUST00000238281 Gm10322 antisense Interval_2774 chr1 44634293 44634505 + 0 NA intron (ENSMUSG00000056870.9, intron 2 of 3) protein_coding-intron (ENSMUSG00000056870.9, intron 1 of 10) -9880 ENSMUSG00000089877.1 ENSMUSG00000089877 ENSMUST00000160955 Gm16102 processed_pseudogene Interval_34869 chr12 12840285 12841471 + 0 NA Intergenic Intergenic -24692 ENSMUSG00000113363.1 ENSMUSG00000113363 ENSMUST00000221441 Gm48187 lincRNA Interval_147727 chr7 73058221 73059576 + 0 NA Intergenic Intergenic -30525 ENSMUSG00000108329.1 ENSMUSG00000108329 ENSMUST00000205307 Gm44725 lincRNA Interval_37032 chr12 56604940 56605160 + 0 NA intron (ENSMUSG00000098172.7, intron 2 of 2) antisense-intron (ENSMUSG00000098172.7, intron 2 of 2) 5426 ENSMUSG00000104155.1 ENSMUSG00000104155 ENSMUST00000191707 Gm38103 TEC Interval_157613 chr8 71709126 71710434 + 0 NA TTS (ENSMUSG00000070000.13) protein_coding-TTS (ENSMUSG00000070000.13) -4812 ENSMUSG00000110569.1 ENSMUSG00000110569 ENSMUST00000212029 Gm18860 processed_pseudogene Interval_108684 chr3 130072413 130072896 + 0 NA Intergenic Intergenic 4242 ENSMUSG00000063328.6 ENSMUSG00000063328 ENSMUST00000076703 Gm9396 processed_pseudogene Interval_61316 chr15 80808730 80809128 + 0 NA intron (ENSMUSG00000047888.10, intron 1 of 17) protein_coding-intron (ENSMUSG00000047888.10, intron 4 of 24) 96658 ENSMUSG00000116480.1 ENSMUSG00000116480 ENSMUST00000230620 Gm49512 sense_intronic Interval_13720 chr10 21382219 21383638 + 0 NA intron (ENSMUSG00000037542.13, intron 2 of 2) protein_coding-intron (ENSMUSG00000037542.13, intron 3 of 6) 5628 ENSMUSG00000037542.13 ENSMUSG00000037542 ENSMUST00000159163 Aldh8a1 protein_coding Interval_28480 chr11 76268322 76269058 + 0 NA intron (ENSMUSG00000020844.6, intron 5 of 7) protein_coding-intron (ENSMUSG00000020844.6, intron 5 of 7) 19478 ENSMUSG00000038046.4 ENSMUSG00000038046 ENSMUST00000155526 Mrm3 protein_coding Interval_23008 chr11 18905844 18906074 + 0 NA intron (ENSMUSG00000020160.18, intron 6 of 9) protein_coding-intron (ENSMUSG00000020160.18, intron 8 of 12) -16119 ENSMUSG00000104244.1 ENSMUSG00000104244 ENSMUST00000195805 2900018N21Rik TEC Interval_64358 chr16 10796410 10797063 + 0 NA promoter-TSS (ENSMUSG00000038015.6) protein_coding-promoter-TSS (ENSMUSG00000038015.6) -602 ENSMUSG00000038015.6 ENSMUSG00000038015 ENSMUST00000189593 Prm2 protein_coding Interval_106257 chr3 94959586 94960587 + 0 NA TTS (ENSMUSG00000005774.12) protein_coding-TTS (ENSMUSG00000005774.12) 1962 ENSMUSG00000087660.1 ENSMUSG00000087660 ENSMUST00000125186 B230398E01Rik antisense Interval_98647 chr2 153807394 153808245 + 0 NA intron (ENSMUSG00000044083.12, intron 12 of 27) protein_coding-intron (ENSMUSG00000044083.12, intron 12 of 27) -18352 ENSMUSG00000083097.3 ENSMUSG00000083097 ENSMUST00000118786 Gm14494 processed_pseudogene Interval_30218 chr11 90733526 90733850 + 0 NA Intergenic Intergenic -46100 ENSMUSG00000020541.12 ENSMUSG00000020541 ENSMUST00000131055 Tom1l1 protein_coding Interval_173616 chrX 101061822 101062319 + 0 NA promoter-TSS (ENSMUSG00000081943.1) processed_pseudogene-promoter-TSS (ENSMUSG00000081943.1) -190 ENSMUSG00000081943.1 ENSMUSG00000081943 ENSMUST00000119126 Gm9078 processed_pseudogene Interval_87516 chr19 53181090 53181578 + 0 NA promoter-TSS (ENSMUSG00000025026.15) protein_coding-promoter-TSS (ENSMUSG00000025026.15) -21471 ENSMUSG00000088855.1 ENSMUSG00000088855 ENSMUST00000158230 Gm24724 snRNA Interval_66798 chr16 37736526 37737203 + 0 NA Intergenic Intergenic -39524 ENSMUSG00000116529.1 ENSMUSG00000116529 ENSMUST00000231714 Gm4600 processed_pseudogene Interval_75125 chr17 63710008 63710802 + 0 NA Intergenic Intergenic -7915 ENSMUSG00000117014.1 ENSMUSG00000117014 ENSMUST00000233403 Gm9300 processed_pseudogene Interval_78743 chr18 20058804 20059955 + 0 NA promoter-TSS (ENSMUSG00000024331.11) protein_coding-promoter-TSS (ENSMUSG00000024331.11) -21240 ENSMUSG00000024331.11 ENSMUSG00000024331 ENSMUST00000128464 Dsc2 protein_coding Interval_62180 chr15 88624659 88624928 + 0 NA Intergenic Intergenic 24491 ENSMUSG00000054117.8 ENSMUSG00000054117 ENSMUST00000066949 Zdhhc25 protein_coding Interval_87987 chr19 57591756 57592097 + 0 NA Intergenic Intergenic 7165 ENSMUSG00000117978.1 ENSMUSG00000117978 ENSMUST00000237779 Gm50286 processed_pseudogene Interval_167397 chr9 68685039 68685248 + 0 NA intron (ENSMUSG00000032238.17, intron 1 of 5) protein_coding-intron (ENSMUSG00000032238.17, intron 1 of 10) 31252 ENSMUSG00000032238.17 ENSMUSG00000032238 ENSMUST00000113624 Rora protein_coding Interval_74238 chr17 47628978 47630494 + 0 NA promoter-TSS (ENSMUSG00000090115.7) protein_coding-promoter-TSS (ENSMUSG00000090115.7) -7397 ENSMUSG00000083672.1 ENSMUSG00000083672 ENSMUST00000120025 Kpna2-ps processed_pseudogene Interval_116020 chr4 107045298 107046156 + 0 NA intron (ENSMUSG00000061887.14, intron 14 of 17) protein_coding-intron (ENSMUSG00000061887.14, intron 14 of 17) 7494 ENSMUSG00000061887.14 ENSMUSG00000061887 ENSMUST00000136487 Ssbp3 protein_coding Interval_120855 chr4 151077026 151077310 + 0 NA intron (ENSMUSG00000014592.21, intron 19 of 24) protein_coding-intron (ENSMUSG00000014592.21, intron 19 of 23) -12402 ENSMUSG00000078491.2 ENSMUSG00000078491 ENSMUST00000105667 Gm13090 protein_coding Interval_23932 chr11 28538215 28538630 + 0 NA intron (ENSMUSG00000032878.16, intron 2 of 5) protein_coding-intron (ENSMUSG00000032878.16, intron 2 of 3) -104312 ENSMUSG00000032878.16 ENSMUSG00000032878 ENSMUST00000109501 Ccdc85a protein_coding Interval_145354 chr7 34176378 34176585 + 0 NA promoter-TSS (ENSMUSG00000081161.1) unprocessed_pseudogene-promoter-TSS (ENSMUSG00000081161.1) -277 ENSMUSG00000081161.1 ENSMUSG00000081161 ENSMUST00000121425 Gm12783 unprocessed_pseudogene Interval_80448 chr18 42302777 42303782 + 0 NA intron (ENSMUSG00000024491.16, intron 3 of 15) protein_coding-intron (ENSMUSG00000024491.16, intron 7 of 19) 1389 ENSMUSG00000092935.1 ENSMUSG00000092935 ENSMUST00000175194 Gm22697 miRNA Interval_44749 chr13 48227206 48228415 + 0 NA intron (ENSMUSG00000114457.1, intron 1 of 3) antisense-intron (ENSMUSG00000097622.2, intron 1 of 2) 9441 ENSMUSG00000114457.1 ENSMUSG00000114457 ENSMUST00000225626 Gm36346 lincRNA Interval_88284 chr2 3348466 3349356 + 0 NA intron (ENSMUSG00000026645.11, intron 4 of 8) protein_coding-intron (ENSMUSG00000026645.11, intron 3 of 7) 5093 ENSMUSG00000103786.1 ENSMUSG00000103786 ENSMUST00000193499 Gm37525 sense_intronic Interval_31944 chr11 103989439 103990807 + 0 NA Intergenic Intergenic 10534 ENSMUSG00000062421.13 ENSMUSG00000062421 ENSMUST00000154089 Arf2 protein_coding Interval_58224 chr15 31188461 31189444 + 0 NA Intergenic Intergenic 5386 ENSMUSG00000077468.1 ENSMUSG00000077468 ENSMUST00000104280 Gm26416 snoRNA Interval_101556 chr3 5771199 5772205 + 0 NA Intergenic Intergenic 20896 ENSMUSG00000103034.1 ENSMUSG00000103034 ENSMUST00000192045 Gm8797 protein_coding Interval_93718 chr2 76097491 76098323 + 0 NA intron (ENSMUSG00000075270.11, intron 7 of 14) protein_coding-intron (ENSMUSG00000075270.11, intron 10 of 19) -115940 ENSMUSG00000075271.4 ENSMUSG00000075271 ENSMUST00000099994 Ttc30a1 protein_coding Interval_170694 chr9 110140585 110140982 + 0 NA intron (ENSMUSG00000032481.17, intron 3 of 24) protein_coding-intron (ENSMUSG00000032481.17, intron 3 of 27) -18967 ENSMUSG00000105187.1 ENSMUSG00000105187 ENSMUST00000196828 Gm23377 snoRNA Interval_10256 chr1 167632001 167632405 + 0 NA intron (ENSMUSG00000015843.10, intron 7 of 10) protein_coding-intron (ENSMUSG00000015843.10, intron 6 of 9) 33743 ENSMUSG00000015843.10 ENSMUSG00000015843 ENSMUST00000111380 Rxrg protein_coding Interval_125040 chr5 64037994 64038562 + 0 NA Intergenic Intergenic -6700 ENSMUSG00000106219.1 ENSMUSG00000106219 ENSMUST00000198687 5830416I19Rik lincRNA Interval_125081 chr5 64327367 64328161 + 0 NA intron (ENSMUSG00000029174.18, intron 4 of 8) protein_coding-intron (ENSMUSG00000029174.18, intron 17 of 21) 7508 ENSMUSG00000083100.1 ENSMUSG00000083100 ENSMUST00000121819 Gm6044 processed_pseudogene Interval_27018 chr11 62396362 62397917 + 0 NA intron (ENSMUSG00000018501.17, intron 10 of 14) protein_coding-intron (ENSMUSG00000018501.17, intron 10 of 45) -13785 ENSMUSG00000018501.17 ENSMUSG00000018501 ENSMUST00000141447 Ncor1 protein_coding Interval_118854 chr4 134073107 134073798 + 0 NA TTS (ENSMUSG00000012123.17) protein_coding-TTS (ENSMUSG00000012123.17) 12637 ENSMUSG00000012123.17 ENSMUSG00000012123 ENSMUST00000143295 Crybg2 protein_coding Interval_128817 chr5 115438149 115438897 + 0 NA intron (ENSMUSG00000054256.11, intron 6 of 10) protein_coding-intron (ENSMUSG00000054256.11, intron 5 of 13) -1879 ENSMUSG00000107353.1 ENSMUSG00000107353 ENSMUST00000202251 4930430O22Rik antisense Interval_141701 chr6 133815183 133816469 + 0 NA Intergenic Intergenic 37847 ENSMUSG00000032758.4 ENSMUSG00000032758 ENSMUST00000203168 Kap protein_coding Interval_170764 chr9 110609144 110610072 + 0 NA intron (ENSMUSG00000044791.16, intron 7 of 9) protein_coding-intron (ENSMUSG00000044791.16, intron 18 of 20) 14823 ENSMUSG00000032491.14 ENSMUSG00000032491 ENSMUST00000197894 Nradd protein_coding Interval_151597 chr7 124720640 124721566 + 0 NA Intergenic Intergenic -12168 ENSMUSG00000086254.1 ENSMUSG00000086254 ENSMUST00000130240 3100003L05Rik lincRNA Interval_131887 chr5 140597557 140597936 + 0 NA Intergenic Intergenic 8805 ENSMUSG00000105699.1 ENSMUSG00000105699 ENSMUST00000200523 Gm43703 lincRNA Interval_144876 chr7 28722048 28722450 + 0 NA intron (ENSMUSG00000030598.15, intron 1 of 1) protein_coding-intron (ENSMUSG00000030598.15, intron 1 of 6) -10251 ENSMUSG00000030598.15 ENSMUSG00000030598 ENSMUST00000167118 Fbxo17 protein_coding Interval_111034 chr4 11385662 11388532 + 0 NA promoter-TSS (ENSMUSG00000040728.15) protein_coding-promoter-TSS (ENSMUSG00000040728.15) -703 ENSMUSG00000040728.15 ENSMUSG00000040728 ENSMUST00000155519 Esrp1 protein_coding Interval_7676 chr1 132980348 132983448 + 0 NA intron (ENSMUSG00000054387.13, intron 10 of 10) protein_coding-intron (ENSMUSG00000054387.13, intron 10 of 10) -36578 ENSMUSG00000102709.1 ENSMUSG00000102709 ENSMUST00000194934 Gm38308 TEC Interval_77943 chr18 5971462 5971838 + 0 NA Intergenic Intergenic 26467 ENSMUSG00000117508.1 ENSMUSG00000117508 ENSMUST00000234953 Gm34804 lincRNA Interval_143910 chr7 17090471 17092080 + 0 NA intron (ENSMUSG00000066760.12, intron 2 of 2) protein_coding-intron (ENSMUSG00000066760.12, intron 2 of 5) 3341 ENSMUSG00000066760.12 ENSMUSG00000066760 ENSMUST00000152671 Psg16 protein_coding Interval_25975 chr11 53273247 53273548 + 0 NA intron (ENSMUSG00000020361.13, intron 8 of 15) protein_coding-intron (ENSMUSG00000020361.13, intron 8 of 18) 27014 ENSMUSG00000020361.13 ENSMUSG00000020361 ENSMUST00000151854 Hspa4 protein_coding Interval_36415 chr12 44199093 44199304 + 0 NA Intergenic Intergenic 3973 ENSMUSG00000111920.1 ENSMUSG00000111920 ENSMUST00000219471 Gm7370 processed_pseudogene Interval_5892 chr1 93008969 93009480 + 0 NA intron (ENSMUSG00000045091.4, intron 2 of 2) protein_coding-intron (ENSMUSG00000045091.4, intron 2 of 2) 2890 ENSMUSG00000045091.4 ENSMUSG00000045091 ENSMUST00000059676 Aqp12 protein_coding Interval_31467 chr11 100841204 100841403 + 0 NA intron (ENSMUSG00000020919.11, intron 1 of 5) protein_coding-intron (ENSMUSG00000020919.11, intron 1 of 18) 9235 ENSMUSG00000020919.11 ENSMUSG00000020919 ENSMUST00000126266 Stat5b protein_coding Interval_111817 chr4 31222927 31223273 + 0 NA Intergenic Intergenic -48088 ENSMUSG00000065053.1 ENSMUSG00000065053 ENSMUST00000083119 Gm25705 snRNA Interval_126606 chr5 90785143 90786553 + 0 NA promoter-TSS (ENSMUSG00000029379.10) protein_coding-promoter-TSS (ENSMUSG00000029379.10) -255 ENSMUSG00000029379.10 ENSMUSG00000029379 ENSMUST00000201840 Cxcl3 protein_coding Interval_34982 chr12 16285210 16285915 + 0 NA intron (ENSMUSG00000113586.1, intron 5 of 5) lincRNA-intron (ENSMUSG00000113586.1, intron 5 of 5) -53335 ENSMUSG00000113892.1 ENSMUSG00000113892 ENSMUST00000220475 Gm48605 lincRNA Interval_90345 chr2 29902600 29902803 + 0 NA promoter-TSS (ENSMUSG00000026790.19) protein_coding-promoter-TSS (ENSMUSG00000026790.19) 12903 ENSMUSG00000026790.19 ENSMUSG00000026790 ENSMUST00000152026 Odf2 protein_coding Interval_131085 chr5 135000737 135001867 + 0 NA promoter-TSS (ENSMUSG00000054909.11) antisense-promoter-TSS (ENSMUSG00000054909.11) 48 ENSMUSG00000054909.11 ENSMUSG00000054909 ENSMUST00000131403 Wbscr25 antisense Interval_18058 chr10 81587219 81588213 + 0 NA promoter-TSS (ENSMUSG00000034771.15) protein_coding-promoter-TSS (ENSMUSG00000034771.15) -925 ENSMUSG00000034771.15 ENSMUSG00000034771 ENSMUST00000153812 Tle2 protein_coding Interval_20992 chr10 123088911 123090293 + 0 NA Intergenic Intergenic -59283 ENSMUSG00000034602.15 ENSMUSG00000034602 ENSMUST00000219203 Mon2 protein_coding Interval_135634 chr6 41989799 41990093 + 0 NA Intergenic Intergenic 21806 ENSMUSG00000062833.2 ENSMUSG00000062833 ENSMUST00000080742 Sval3 protein_coding Interval_78903 chr18 21379967 21381252 + 0 NA TTS (ENSMUSG00000096341.1) snRNA-TTS (ENSMUSG00000096341.1) 322 ENSMUSG00000096341.1 ENSMUSG00000096341 ENSMUST00000093714 Gm22886 snRNA Interval_580 chr1 7783209 7783460 + 0 NA Intergenic Intergenic -52769 ENSMUSG00000103557.1 ENSMUSG00000103557 ENSMUST00000194872 Gm38216 processed_pseudogene Interval_165901 chr9 54501013 54502245 + 0 NA promoter-TSS (ENSMUSG00000041268.17) protein_coding-promoter-TSS (ENSMUSG00000041268.17) -35556 ENSMUSG00000087801.1 ENSMUSG00000087801 ENSMUST00000157176 Gm25980 misc_RNA Interval_173567 chrX 99521765 99523695 + 0 NA Intergenic Intergenic -51995 ENSMUSG00000034403.16 ENSMUSG00000034403 ENSMUST00000113797 Pja1 protein_coding Interval_58352 chr15 33082841 33083624 + 0 NA promoter-TSS (ENSMUSG00000039007.10) protein_coding-promoter-TSS (ENSMUSG00000039007.10) -20 ENSMUSG00000039007.10 ENSMUSG00000039007 ENSMUST00000226896 Cpq protein_coding Interval_52149 chr14 37154373 37154688 + 0 NA Intergenic Intergenic -19276 ENSMUSG00000041028.16 ENSMUSG00000041028 ENSMUST00000223921 Ghitm protein_coding Interval_14363 chr10 31533321 31533935 + 0 NA intron (ENSMUSG00000063760.9, intron 2 of 5) protein_coding-intron (ENSMUSG00000063760.9, intron 2 of 5) 23812 ENSMUSG00000112338.1 ENSMUSG00000112338 ENSMUST00000219494 Gm47693 TEC Interval_171871 chr9 121904655 121904898 + 0 NA intron (ENSMUSG00000044534.8, intron 2 of 3) protein_coding-intron (ENSMUSG00000044534.8, intron 1 of 2) -1488 ENSMUSG00000044534.8 ENSMUSG00000044534 ENSMUST00000216326 Ackr2 protein_coding Interval_88696 chr2 9844698 9844986 + 0 NA Intergenic Intergenic 30557 ENSMUSG00000015619.10 ENSMUSG00000015619 ENSMUST00000142305 Gata3 protein_coding Interval_146292 chr7 45168256 45169073 + 0 NA promoter-TSS (ENSMUSG00000070570.5) protein_coding-promoter-TSS (ENSMUSG00000070570.5) -1237 ENSMUSG00000070570.5 ENSMUSG00000070570 ENSMUST00000211652 Slc17a7 protein_coding Interval_91178 chr2 35681357 35681540 + 0 NA intron (ENSMUSG00000026883.17, intron 1 of 3) protein_coding-intron (ENSMUSG00000026883.17, intron 3 of 15) -28879 ENSMUSG00000026883.17 ENSMUSG00000026883 ENSMUST00000156669 Dab2ip protein_coding Interval_21374 chr10 128237414 128238402 + 0 NA promoter-TSS (ENSMUSG00000039994.15) protein_coding-promoter-TSS (ENSMUSG00000039994.15) -4500 ENSMUSG00000039994.15 ENSMUSG00000039994 ENSMUST00000129147 Timeless protein_coding Interval_103419 chr3 41454238 41454483 + 0 NA Intergenic Intergenic -12893 ENSMUSG00000089350.1 ENSMUSG00000089350 ENSMUST00000158725 Gm25487 snoRNA Interval_140233 chr6 115702863 115703400 + 0 NA Intergenic Intergenic 20701 ENSMUSG00000088358.1 ENSMUSG00000088358 ENSMUST00000157733 Gm24008 snoRNA Interval_133694 chr6 8777512 8778588 + 0 NA promoter-TSS (ENSMUSG00000062995.12) protein_coding-promoter-TSS (ENSMUSG00000062995.12) -19651 ENSMUSG00000062995.12 ENSMUSG00000062995 ENSMUST00000151758 Ica1 protein_coding Interval_35661 chr12 27077309 27078033 + 0 NA intron (ENSMUSG00000094002.3, intron 2 of 4) lincRNA-intron (ENSMUSG00000094002.3, intron 3 of 3) 82832 ENSMUSG00000094002.3 ENSMUSG00000094002 ENSMUST00000183238 Gm9866 lincRNA Interval_19526 chr10 102189275 102189678 + 0 NA intron (ENSMUSG00000019888.16, intron 3 of 4) protein_coding-intron (ENSMUSG00000019888.16, intron 1 of 5) 30571 ENSMUSG00000019888.16 ENSMUSG00000019888 ENSMUST00000120748 Mgat4c protein_coding Interval_80302 chr18 38981455 38982394 + 0 NA intron (ENSMUSG00000118193.1, intron 2 of 5) protein_coding-intron (ENSMUSG00000118193.1, intron 2 of 5) 12268 ENSMUSG00000086991.1 ENSMUSG00000086991 ENSMUST00000131421 Gm15334 antisense Interval_7038 chr1 123297683 123297859 + 0 NA Intergenic Intergenic 10197 ENSMUSG00000101495.1 ENSMUSG00000101495 ENSMUST00000189001 Gm28912 processed_pseudogene Interval_79214 chr18 25726708 25727481 + 0 NA intron (ENSMUSG00000024268.16, intron 1 of 12) protein_coding-intron (ENSMUSG00000024268.16, intron 1 of 12) 13324 ENSMUSG00000114511.1 ENSMUSG00000114511 ENSMUST00000224766 0710001A04Rik antisense Interval_31200 chr11 98858839 98859536 + 0 NA Intergenic Intergenic 8855 ENSMUSG00000038020.5 ENSMUSG00000038020 ENSMUST00000139889 Rapgefl1 protein_coding Interval_67666 chr16 55823812 55824319 + 0 NA TTS (ENSMUSG00000035356.17) protein_coding-TTS (ENSMUSG00000035356.17) -5550 ENSMUSG00000035356.17 ENSMUSG00000035356 ENSMUST00000139373 Nfkbiz protein_coding Interval_363 chr1 4571340 4572242 + 0 NA Intergenic Intergenic 14461 ENSMUSG00000104328.1 ENSMUSG00000104328 ENSMUST00000195771 Gm37323 lincRNA Interval_82126 chr18 67882838 67883549 + 0 NA intron (ENSMUSG00000024542.9, intron 25 of 25) protein_coding-intron (ENSMUSG00000024542.9, intron 45 of 45) 12866 ENSMUSG00000024542.9 ENSMUSG00000024542 ENSMUST00000225589 Cep192 protein_coding Interval_15010 chr10 41906601 41906974 + 0 NA intron (ENSMUSG00000038332.13, intron 9 of 9) protein_coding-intron (ENSMUSG00000038332.13, intron 9 of 9) 8414 ENSMUSG00000038332.13 ENSMUSG00000038332 ENSMUST00000214835 Sesn1 protein_coding Interval_64376 chr16 10936792 10937039 + 0 NA intron (ENSMUSG00000117309.1, intron 1 of 45) processed_transcript-intron (ENSMUSG00000095369.2, intron 1 of 5) 391 ENSMUSG00000095369.2 ENSMUSG00000095369 ENSMUST00000233047 Gm21859 processed_transcript Interval_42914 chr13 21326257 21327797 + 0 NA Intergenic Intergenic 9769 ENSMUSG00000004341.8 ENSMUSG00000004341 ENSMUST00000136668 Gpx6 protein_coding Interval_118905 chr4 134387236 134387505 + 0 NA Intergenic Intergenic -9953 ENSMUSG00000037366.14 ENSMUSG00000037366 ENSMUST00000145626 Pafah2 protein_coding Interval_80440 chr18 42255321 42256207 + 0 NA intron (ENSMUSG00000024493.9, intron 2 of 14) protein_coding-intron (ENSMUSG00000024493.9, intron 2 of 31) 3366 ENSMUSG00000096699.1 ENSMUSG00000096699 ENSMUST00000091925 Rps19-ps4 processed_pseudogene Interval_115479 chr4 99292205 99292572 + 0 NA Intergenic Intergenic -3512 ENSMUSG00000070891.2 ENSMUSG00000070891 ENSMUST00000094955 Gm12689 protein_coding Interval_58314 chr15 32269528 32270398 + 0 NA intron (ENSMUSG00000022231.10, intron 3 of 3) protein_coding-intron (ENSMUSG00000022231.10, intron 1 of 22) 25138 ENSMUSG00000022231.10 ENSMUSG00000022231 ENSMUST00000227429 Sema5a protein_coding Interval_42550 chr13 15236078 15236867 + 0 NA Intergenic Intergenic 117840 ENSMUSG00000113389.1 ENSMUSG00000113389 ENSMUST00000223112 Gm9512 processed_pseudogene Interval_21133 chr10 126799565 126800310 + 0 NA Intergenic Intergenic -6227 ENSMUSG00000112832.1 ENSMUSG00000112832 ENSMUST00000218870 4930484H19Rik lincRNA Interval_17281 chr10 75553016 75554273 + 0 NA exon (ENSMUSG00000046807.10, exon 4 of 4) protein_coding-exon (ENSMUSG00000046807.10, exon 4 of 4) 250 ENSMUSG00000046807.10 ENSMUSG00000046807 ENSMUST00000051129 Lrrc75b protein_coding Interval_55838 chr14 101331877 101332541 + 0 NA Intergenic Intergenic -11335 ENSMUSG00000115538.1 ENSMUSG00000115538 ENSMUST00000227762 Hspd1-ps5 processed_pseudogene Interval_106759 chr3 100515141 100515650 + 0 NA intron (ENSMUSG00000053957.5, intron 2 of 2) lincRNA-intron (ENSMUSG00000053957.5, intron 2 of 2) 17966 ENSMUSG00000104943.1 ENSMUSG00000104943 ENSMUST00000199168 Gm42868 sense_intronic Interval_99992 chr2 166287755 166288048 + 0 NA intron (ENSMUSG00000084840.1, intron 2 of 2) lincRNA-intron (ENSMUSG00000084840.1, intron 2 of 2) 13993 ENSMUSG00000084840.1 ENSMUSG00000084840 ENSMUST00000152987 Gm11468 lincRNA Interval_1538 chr1 25063774 25064543 + 0 NA Intergenic Intergenic -36926 ENSMUSG00000099392.1 ENSMUSG00000099392 ENSMUST00000185379 Gm29414 lincRNA Interval_138853 chr6 92567339 92567656 + 0 NA promoter-TSS (ENSMUSG00000030020.13) protein_coding-promoter-TSS (ENSMUSG00000030020.13) -131 ENSMUSG00000030020.13 ENSMUSG00000030020 ENSMUST00000113445 Prickle2 protein_coding Interval_21861 chr11 4805930 4807095 + 0 NA intron (ENSMUSG00000009073.16, intron 4 of 8) protein_coding-intron (ENSMUSG00000009073.16, intron 5 of 16) 42613 ENSMUSG00000009073.16 ENSMUSG00000009073 ENSMUST00000172305 Nf2 protein_coding Interval_157332 chr8 69413633 69415787 + 0 NA Intergenic Intergenic -4787 ENSMUSG00000110474.1 ENSMUSG00000110474 ENSMUST00000212932 Gm45848 lincRNA Interval_153270 chr7 143094582 143095162 + 0 NA promoter-TSS (ENSMUSG00000009246.14) protein_coding-promoter-TSS (ENSMUSG00000009246.14) -266 ENSMUSG00000009246.14 ENSMUSG00000009246 ENSMUST00000133027 Trpm5 protein_coding Interval_77316 chr17 87989465 87990069 + 0 NA intron (ENSMUSG00000005370.4, intron 7 of 9) protein_coding-intron (ENSMUSG00000005370.4, intron 7 of 9) 14672 ENSMUSG00000005370.4 ENSMUSG00000005370 ENSMUST00000234756 Msh6 protein_coding Interval_128150 chr5 111318847 111319460 + 0 NA Intergenic Intergenic 11391 ENSMUSG00000106374.1 ENSMUSG00000106374 ENSMUST00000199221 Gm27680 TEC Interval_23944 chr11 28665587 28665855 + 0 NA Intergenic Intergenic -15843 ENSMUSG00000084966.1 ENSMUSG00000084966 ENSMUST00000146554 2810471M01Rik lincRNA Interval_95916 chr2 118372813 118374417 + 0 NA promoter-TSS (ENSMUSG00000040133.2) protein_coding-promoter-TSS (ENSMUSG00000040133.2) -196 ENSMUSG00000040133.2 ENSMUSG00000040133 ENSMUST00000039160 Gpr176 protein_coding Interval_19121 chr10 94813776 94814154 + 0 NA intron (ENSMUSG00000074785.5, intron 21 of 30) protein_coding-intron (ENSMUSG00000074785.5, intron 21 of 30) 7690 ENSMUSG00000088608.1 ENSMUSG00000088608 ENSMUST00000157983 Gm24186 rRNA Interval_151557 chr7 123566222 123566473 + 0 NA Intergenic Intergenic -85418 ENSMUSG00000030757.13 ENSMUSG00000030757 ENSMUST00000128217 Zkscan2 protein_coding Interval_151328 chr7 121088303 121089149 + 0 NA intron (ENSMUSG00000034990.15, intron 1 of 28) protein_coding-intron (ENSMUSG00000034990.15, intron 1 of 28) 7076 ENSMUSG00000034990.15 ENSMUSG00000034990 ENSMUST00000163275 Otoa protein_coding Interval_40635 chr12 106174887 106176069 + 0 NA Intergenic Intergenic -30078 ENSMUSG00000114149.1 ENSMUSG00000114149 ENSMUST00000223462 Gm47646 lincRNA Interval_111937 chr4 32680833 32681454 + 0 NA intron (ENSMUSG00000058006.12, intron 15 of 101) protein_coding-intron (ENSMUSG00000058006.12, intron 15 of 101) 24024 ENSMUSG00000058006.12 ENSMUSG00000058006 ENSMUST00000124361 Mdn1 protein_coding Interval_20733 chr10 120609259 120610661 + 0 NA Intergenic Intergenic 4423 ENSMUSG00000088924.1 ENSMUSG00000088924 ENSMUST00000158299 Gm24298 snoRNA Interval_98160 chr2 148897228 148897544 + 0 NA Intergenic Intergenic -7098 ENSMUSG00000103559.1 ENSMUSG00000103559 ENSMUST00000195146 Gm38221 TEC Interval_91094 chr2 34998680 34999508 + 0 NA intron (ENSMUSG00000026874.10, intron 4 of 6) protein_coding-intron (ENSMUSG00000026874.10, intron 30 of 40) 5121 ENSMUSG00000085599.1 ENSMUSG00000085599 ENSMUST00000153559 Gm13449 antisense Interval_106955 chr3 102167465 102168385 + 0 NA promoter-TSS (ENSMUSG00000027860.15) protein_coding-promoter-TSS (ENSMUSG00000027860.15) 33310 ENSMUSG00000106296.1 ENSMUSG00000106296 ENSMUST00000197326 4632404M16Rik sense_intronic Interval_18171 chr10 83210183 83210471 + 0 NA Intergenic Intergenic -52200 ENSMUSG00000088270.1 ENSMUSG00000088270 ENSMUST00000157645 Gm23122 snRNA Interval_6024 chr1 94052769 94052980 + 0 NA promoter-TSS (ENSMUSG00000026285.7) protein_coding-promoter-TSS (ENSMUSG00000026285.7) -321 ENSMUSG00000026285.7 ENSMUSG00000026285 ENSMUST00000027507 Pdcd1 protein_coding Interval_98098 chr2 148043875 148046930 + 0 NA promoter-TSS (ENSMUSG00000037025.11) protein_coding-promoter-TSS (ENSMUSG00000037025.11) 1494 ENSMUSG00000037025.11 ENSMUSG00000037025 ENSMUST00000146242 Foxa2 protein_coding Interval_157587 chr8 71562650 71563087 + 0 NA exon (ENSMUSG00000034829.8, exon 2 of 3) protein_coding-exon (ENSMUSG00000034829.8, exon 2 of 3) 3733 ENSMUSG00000034829.8 ENSMUSG00000034829 ENSMUST00000048243 Nxnl1 protein_coding Interval_132360 chr5 144457052 144458348 + 0 NA Intergenic Intergenic 51098 ENSMUSG00000083574.1 ENSMUSG00000083574 ENSMUST00000118354 Gm15709 processed_pseudogene Interval_49965 chr13 118996505 118997242 + 0 NA Intergenic Intergenic -138459 ENSMUSG00000114868.1 ENSMUSG00000114868 ENSMUST00000224309 Gm47335 processed_pseudogene Interval_68744 chr16 85433526 85433802 + 0 NA intron (ENSMUSG00000041134.15, intron 2 of 2) protein_coding-intron (ENSMUSG00000041134.15, intron 2 of 2) 116753 ENSMUSG00000041134.15 ENSMUSG00000041134 ENSMUST00000162621 Cyyr1 protein_coding Interval_58277 chr15 31578843 31579480 + 0 NA intron (ENSMUSG00000022235.15, intron 1 of 3) protein_coding-intron (ENSMUSG00000022235.15, intron 1 of 5) 13772 ENSMUSG00000022235.15 ENSMUSG00000022235 ENSMUST00000161088 Cmbl protein_coding Interval_124530 chr5 50050231 50051757 + 0 NA exon (ENSMUSG00000029090.12, exon 1 of 1) protein_coding-exon (ENSMUSG00000029090.12, exon 1 of 1) 7651 ENSMUSG00000029090.12 ENSMUSG00000029090 ENSMUST00000199132 Adgra3 protein_coding Interval_64104 chr16 8388181 8388690 + 0 NA Intergenic Intergenic -14379 ENSMUSG00000077152.1 ENSMUSG00000077152 ENSMUST00000103964 Gm24579 snoRNA Interval_37271 chr12 64332744 64333059 + 0 NA Intergenic Intergenic 141789 ENSMUSG00000043060.8 ENSMUSG00000043060 ENSMUST00000059833 Fscb protein_coding Interval_144102 chr7 19426112 19428344 + 0 NA intron (ENSMUSG00000030397.11, intron 17 of 17) protein_coding-intron (ENSMUSG00000030397.11, intron 16 of 16) -5811 ENSMUSG00000040705.2 ENSMUSG00000040705 ENSMUST00000047020 A930016O22Rik antisense Interval_141001 chr6 124260432 124260909 + 0 NA Intergenic Intergenic 9139 ENSMUSG00000107921.1 ENSMUSG00000107921 ENSMUST00000204315 Gm6423 processed_pseudogene Interval_174103 chrX 134763399 134763740 + 0 NA Intergenic Intergenic 5938 ENSMUSG00000099272.1 ENSMUSG00000099272 ENSMUST00000184195 Mir7093 miRNA Interval_140376 chr6 117652135 117652434 + 0 NA intron (ENSMUSG00000099869.6, intron 2 of 3) lincRNA-intron (ENSMUSG00000099869.6, intron 3 of 4) -39714 ENSMUSG00000107785.1 ENSMUSG00000107785 ENSMUST00000205216 Gm45083 lincRNA Interval_42045 chr13 6835783 6837505 + 0 NA Intergenic Intergenic 89207 ENSMUSG00000113932.1 ENSMUSG00000113932 ENSMUST00000220700 2900024D18Rik TEC Interval_111957 chr4 32832383 32832691 + 0 NA intron (ENSMUSG00000040183.13, intron 2 of 3) protein_coding-intron (ENSMUSG00000040183.13, intron 4 of 16) 28146 ENSMUSG00000040183.13 ENSMUSG00000040183 ENSMUST00000149650 Ankrd6 protein_coding Interval_40291 chr12 103229874 103230438 + 0 NA intron (ENSMUSG00000041669.15, intron 2 of 4) protein_coding-intron (ENSMUSG00000041669.15, intron 3 of 4) 11972 ENSMUSG00000041669.15 ENSMUSG00000041669 ENSMUST00000155547 Prima1 protein_coding Interval_6382 chr1 106628879 106630542 + 0 NA intron (ENSMUSG00000057329.7, intron 1 of 1) protein_coding-intron (ENSMUSG00000057329.7, intron 1 of 1) -22840 ENSMUSG00000103348.1 ENSMUSG00000103348 ENSMUST00000192399 Gm37053 TEC Interval_72210 chr17 28599464 28599733 + 0 NA TTS (ENSMUSG00000004865.16) protein_coding-TTS (ENSMUSG00000004865.16) 22885 ENSMUSG00000004865.16 ENSMUSG00000004865 ENSMUST00000114767 Srpk1 protein_coding Interval_28369 chr11 75430670 75431095 + 0 NA TTS (ENSMUSG00000038224.12) protein_coding-TTS (ENSMUSG00000038224.12) 3129 ENSMUSG00000084224.1 ENSMUSG00000084224 ENSMUST00000119634 Gm12337 processed_pseudogene Interval_128700 chr5 114800256 114802361 + 0 NA exon (ENSMUSG00000041870.16, exon 1 of 1) protein_coding-exon (ENSMUSG00000041870.16, exon 1 of 1) 1737 ENSMUSG00000041870.16 ENSMUSG00000041870 ENSMUST00000200704 Ankrd13a protein_coding Interval_40890 chr12 109137803 109138138 + 0 NA Intergenic Intergenic 39743 ENSMUSG00000113306.1 ENSMUSG00000113306 ENSMUST00000223357 Mif-ps7 processed_pseudogene Interval_65186 chr16 20411945 20412166 + 0 NA intron (ENSMUSG00000022822.16, intron 2 of 4) protein_coding-intron (ENSMUSG00000022822.16, intron 2 of 10) -13107 ENSMUSG00000022822.16 ENSMUSG00000022822 ENSMUST00000231522 Abcc5 protein_coding Interval_22992 chr11 18557939 18558261 + 0 NA Intergenic Intergenic 20379 ENSMUSG00000081101.1 ENSMUSG00000081101 ENSMUST00000118819 Gm12024 processed_pseudogene Interval_93265 chr2 71555832 71557043 + 0 NA Intergenic Intergenic -10487 ENSMUSG00000023391.8 ENSMUSG00000023391 ENSMUST00000134249 Dlx2 protein_coding Interval_111625 chr4 24792440 24793013 + 0 NA promoter-TSS (ENSMUSG00000087399.1) antisense-promoter-TSS (ENSMUSG00000087399.1) 46 ENSMUSG00000087399.1 ENSMUSG00000087399 ENSMUST00000142373 Gm11899 antisense Interval_79111 chr18 24652441 24655344 + 0 NA promoter-TSS (ENSMUSG00000039616.10) protein_coding-promoter-TSS (ENSMUSG00000039616.10) 14 ENSMUSG00000039616.10 ENSMUSG00000039616 ENSMUST00000234253 Mocos protein_coding Interval_92398 chr2 59526277 59526617 + 0 NA Intergenic Intergenic 38237 ENSMUSG00000081157.1 ENSMUSG00000081157 ENSMUST00000118837 Gm13552 processed_pseudogene Interval_44024 chr13 39923524 39925361 + 0 NA Intergenic Intergenic -40061 ENSMUSG00000114957.1 ENSMUSG00000114957 ENSMUST00000224937 Gm47316 lincRNA Interval_32697 chr11 109721108 109723235 + 0 NA promoter-TSS (ENSMUSG00000020614.13) protein_coding-promoter-TSS (ENSMUSG00000020614.13) 108 ENSMUSG00000020614.13 ENSMUSG00000020614 ENSMUST00000144972 Fam20a protein_coding Interval_1086 chr1 15327097 15327643 + 0 NA intron (ENSMUSG00000092083.4, intron 2 of 2) protein_coding-intron (ENSMUSG00000092083.4, intron 1 of 1) -36932 ENSMUSG00000102937.1 ENSMUSG00000102937 ENSMUST00000193873 Gm38116 TEC Interval_85617 chr19 29095777 29096314 + 0 NA Intergenic Intergenic -5330 ENSMUSG00000024785.7 ENSMUSG00000024785 ENSMUST00000235900 Rcl1 protein_coding Interval_74206 chr17 47467690 47469424 + 0 NA exon (ENSMUSG00000034382.14, exon 4 of 5) protein_coding-exon (ENSMUSG00000034382.14, exon 4 of 5) -31181 ENSMUSG00000047150.8 ENSMUSG00000047150 ENSMUST00000160678 1700001C19Rik protein_coding Interval_5958 chr1 93527722 93527952 + 0 NA intron (ENSMUSG00000034066.13, intron 1 of 12) protein_coding-intron (ENSMUSG00000034066.13, intron 1 of 26) -3978 ENSMUSG00000103854.1 ENSMUSG00000103854 ENSMUST00000194919 Gm37250 TEC Interval_126496 chr5 89166460 89167384 + 0 NA intron (ENSMUSG00000060961.16, intron 15 of 25) protein_coding-intron (ENSMUSG00000060961.16, intron 14 of 24) 268706 ENSMUSG00000035540.12 ENSMUSG00000035540 ENSMUST00000200534 Gc protein_coding Interval_45924 chr13 59342030 59342273 + 0 NA Intergenic Intergenic -11908 ENSMUSG00000114240.1 ENSMUSG00000114240 ENSMUST00000224237 Gm47360 lincRNA Interval_117231 chr4 120795958 120798247 + 0 NA intron (ENSMUSG00000032897.17, intron 1 of 9) protein_coding-intron (ENSMUSG00000032897.17, intron 1 of 9) -24405 ENSMUSG00000065409.1 ENSMUSG00000065409 ENSMUST00000083475 Mir30e miRNA Interval_27337 chr11 66606215 66607115 + 0 NA Intergenic Intergenic 43058 ENSMUSG00000080978.2 ENSMUSG00000080978 ENSMUST00000121380 Gm12297 processed_pseudogene Interval_29607 chr11 85334584 85335716 + 0 NA intron (ENSMUSG00000020525.17, intron 3 of 3) protein_coding-intron (ENSMUSG00000020525.17, intron 3 of 5) 22986 ENSMUSG00000020525.17 ENSMUSG00000020525 ENSMUST00000127717 Ppm1d protein_coding Interval_86513 chr19 41310916 41311569 + 0 NA intron (ENSMUSG00000025017.10, intron 8 of 8) protein_coding-intron (ENSMUSG00000025017.10, intron 8 of 16) -47262 ENSMUSG00000025016.11 ENSMUSG00000025016 ENSMUST00000237871 Tm9sf3 protein_coding Interval_57838 chr15 22906637 22907237 + 0 NA intron (ENSMUSG00000040420.15, intron 1 of 6) protein_coding-intron (ENSMUSG00000040420.15, intron 1 of 6) -28550 ENSMUSG00000091194.1 ENSMUSG00000091194 ENSMUST00000169624 Gm19840 processed_pseudogene Interval_132482 chr5 145217727 145219083 + 0 NA TTS (ENSMUSG00000055991.15) protein_coding-TTS (ENSMUSG00000055991.15) 10801 ENSMUSG00000055991.15 ENSMUSG00000055991 ENSMUST00000160162 Zkscan5 protein_coding Interval_27267 chr11 65125119 65125397 + 0 NA intron (ENSMUSG00000033389.16, intron 1 of 20) protein_coding-intron (ENSMUSG00000033389.16, intron 1 of 20) 34633 ENSMUSG00000020548.10 ENSMUSG00000020548 ENSMUST00000108696 1700086D15Rik protein_coding Interval_147048 chr7 60002834 60005218 + 0 NA intron (ENSMUSG00000102252.5, intron 2 of 10) protein_coding-intron (ENSMUSG00000102252.5, intron 1 of 9) 1023 ENSMUSG00000102627.1 ENSMUSG00000102627 ENSMUST00000194059 Snurf protein_coding Interval_163842 chr9 27093242 27094262 + 0 NA intron (ENSMUSG00000035024.16, intron 32 of 34) protein_coding-intron (ENSMUSG00000035024.16, intron 33 of 35) -4799 ENSMUSG00000111390.1 ENSMUSG00000111390 ENSMUST00000217654 Gm48796 antisense Interval_82752 chr18 76782161 76782745 + 0 NA Intergenic Intergenic -73952 ENSMUSG00000091519.1 ENSMUSG00000091519 ENSMUST00000166956 Skor2 protein_coding Interval_28805 chr11 78430255 78430974 + 0 NA Intergenic Intergenic -8397 ENSMUSG00000001095.5 ENSMUSG00000001095 ENSMUST00000001122 Slc13a2 protein_coding Interval_48928 chr13 104940026 104940447 + 0 NA Intergenic Intergenic 21456 ENSMUSG00000114326.1 ENSMUSG00000114326 ENSMUST00000171334 Gm4938 processed_pseudogene Interval_69785 chr16 96320709 96320918 + 0 NA TTS (ENSMUSG00000074892.9) protein_coding-TTS (ENSMUSG00000074892.9) -40981 ENSMUSG00000117081.1 ENSMUSG00000117081 ENSMUST00000113795 Gm49948 protein_coding Interval_12273 chr1 191312267 191313156 + 0 NA intron (ENSMUSG00000037499.9, intron 1 of 3) protein_coding-intron (ENSMUSG00000037499.9, intron 1 of 3) 5483 ENSMUSG00000037499.9 ENSMUSG00000037499 ENSMUST00000046770 Nenf protein_coding Interval_37009 chr12 56301685 56302192 + 0 NA Intergenic Intergenic -34734 ENSMUSG00000088389.1 ENSMUSG00000088389 ENSMUST00000157764 Gm24685 misc_RNA Interval_123773 chr5 35399587 35400093 + 0 NA TTS (ENSMUSG00000067438.5) protein_coding-TTS (ENSMUSG00000067438.5) 3742 ENSMUSG00000106970.1 ENSMUSG00000106970 ENSMUST00000201640 Gm43377 TEC Interval_77751 chr17 94877965 94879325 + 0 NA TTS (ENSMUSG00000095193.2) lincRNA-TTS (ENSMUSG00000095193.2) -8657 ENSMUSG00000065658.1 ENSMUSG00000065658 ENSMUST00000083724 Gm23102 snRNA Interval_121656 chr5 4495428 4496206 + 0 NA Intergenic Intergenic 262218 ENSMUSG00000044674.6 ENSMUSG00000044674 ENSMUST00000054294 Fzd1 protein_coding Interval_48906 chr13 104627598 104627897 + 0 NA Intergenic Intergenic -57184 ENSMUSG00000084860.1 ENSMUSG00000084860 ENSMUST00000131215 2610204G07Rik antisense Interval_102632 chr3 28709876 28710625 + 0 NA intron (ENSMUSG00000027690.13, intron 3 of 9) protein_coding-intron (ENSMUSG00000027690.13, intron 3 of 10) -11267 ENSMUSG00000027690.13 ENSMUSG00000027690 ENSMUST00000169047 Slc2a2 protein_coding Interval_141742 chr6 134157169 134157765 + 0 NA intron (ENSMUSG00000030199.16, intron 2 of 4) protein_coding-intron (ENSMUSG00000030199.16, intron 2 of 7) 14540 ENSMUSG00000091438.1 ENSMUSG00000091438 ENSMUST00000164616 Gm17088 antisense Interval_8624 chr1 144320657 144321608 + 0 NA Intergenic Intergenic -8696 ENSMUSG00000100441.1 ENSMUSG00000100441 ENSMUST00000187999 Gm7266 processed_pseudogene Interval_33729 chr11 118145955 118146278 + 0 NA intron (ENSMUSG00000017132.17, intron 12 of 13) protein_coding-intron (ENSMUSG00000017132.17, intron 12 of 13) 31261 ENSMUSG00000085511.1 ENSMUSG00000085511 ENSMUST00000134069 Gm11738 antisense Interval_148242 chr7 80054361 80054623 + 0 NA intron (ENSMUSG00000048897.15, intron 1 of 1) protein_coding-intron (ENSMUSG00000048897.15, intron 1 of 4) 17787 ENSMUSG00000108365.1 ENSMUSG00000108365 ENSMUST00000206449 Gm44951 TEC Interval_12414 chr1 193197870 193198294 + 0 NA promoter-TSS (ENSMUSG00000037318.10) protein_coding-promoter-TSS (ENSMUSG00000037318.10) 3465 ENSMUSG00000037318.10 ENSMUSG00000037318 ENSMUST00000162905 Traf3ip3 protein_coding Interval_136957 chr6 65075186 65075748 + 0 NA TTS (ENSMUSG00000029920.9) protein_coding-TTS (ENSMUSG00000029920.9) 32800 ENSMUSG00000029920.9 ENSMUSG00000029920 ENSMUST00000203104 Smarcad1 protein_coding Interval_167473 chr9 69703775 69704076 + 0 NA Intergenic Intergenic 57015 ENSMUSG00000059246.4 ENSMUSG00000059246 ENSMUST00000071281 Foxb1 protein_coding Interval_130239 chr5 125147197 125147542 + 0 NA intron (ENSMUSG00000029478.16, intron 1 of 47) protein_coding-intron (ENSMUSG00000029478.16, intron 1 of 46) 60528 ENSMUSG00000106663.1 ENSMUSG00000106663 ENSMUST00000198978 Gm42839 antisense Interval_20001 chr10 111867307 111868215 + 0 NA intron (ENSMUSG00000112533.1, intron 2 of 5) lincRNA-intron (ENSMUSG00000112533.1, intron 2 of 5) 6615 ENSMUSG00000112533.1 ENSMUSG00000112533 ENSMUST00000220339 Gm20758 lincRNA Interval_941 chr1 13324739 13325058 + 0 NA intron (ENSMUSG00000005886.14, intron 1 of 12) protein_coding-intron (ENSMUSG00000005886.14, intron 1 of 22) 9711 ENSMUSG00000087782.1 ENSMUSG00000087782 ENSMUST00000157157 Gm23169 snRNA Interval_87635 chr19 53848429 53848901 + 0 NA intron (ENSMUSG00000043639.15, intron 9 of 13) protein_coding-intron (ENSMUSG00000043639.15, intron 1 of 6) -23537 ENSMUSG00000089679.1 ENSMUSG00000089679 ENSMUST00000162724 Gm16299 antisense Interval_16232 chr10 61580034 61580465 + 0 NA exon (ENSMUSG00000037151.8, exon 5 of 5) protein_coding-exon (ENSMUSG00000037151.8, exon 5 of 5) 9338 ENSMUSG00000112255.1 ENSMUSG00000112255 ENSMUST00000219114 Gm47594 TEC Interval_79892 chr18 35770889 35772223 + 0 NA promoter-TSS (ENSMUSG00000091896.8) protein_coding-promoter-TSS (ENSMUSG00000091896.8) -32 ENSMUSG00000091896.8 ENSMUSG00000091896 ENSMUST00000237482 Ube2d2a protein_coding Interval_43161 chr13 24775756 24777205 + 0 NA Intergenic Intergenic -14583 ENSMUSG00000006715.11 ENSMUSG00000006715 ENSMUST00000177253 Gmnn protein_coding Interval_162560 chr9 4330707 4331152 + 0 NA exon (ENSMUSG00000025893.8, exon 3 of 3) protein_coding-exon (ENSMUSG00000025893.8, exon 3 of 3) 21094 ENSMUSG00000025893.8 ENSMUSG00000025893 ENSMUST00000212221 Kbtbd3 protein_coding Interval_23093 chr11 19910976 19912918 + 0 NA Intergenic Intergenic -42623 ENSMUSG00000045671.17 ENSMUSG00000045671 ENSMUST00000123036 Spred2 protein_coding Interval_85987 chr19 34673142 34674047 + 0 NA intron (ENSMUSG00000009378.4, intron 5 of 6) protein_coding-intron (ENSMUSG00000009378.4, intron 5 of 6) 17953 ENSMUSG00000009378.4 ENSMUSG00000009378 ENSMUST00000235650 Slc16a12 protein_coding Interval_123042 chr5 29137093 29137356 + 0 NA Intergenic Intergenic -59363 ENSMUSG00000029130.12 ENSMUSG00000029130 ENSMUST00000163050 Rnf32 protein_coding Interval_69874 chr16 97793269 97794013 + 0 NA TTS (ENSMUSG00000014039.18) protein_coding-TTS (ENSMUSG00000014039.18) 5948 ENSMUSG00000014039.18 ENSMUSG00000014039 ENSMUST00000135505 Prdm15 protein_coding Interval_142335 chr6 140684037 140684781 + 0 NA Intergenic Intergenic -44875 ENSMUSG00000079264.1 ENSMUSG00000079264 ENSMUST00000111844 Gm11077 protein_coding Interval_20229 chr10 116297616 116298197 + 0 NA intron (ENSMUSG00000020154.10, intron 3 of 33) protein_coding-intron (ENSMUSG00000020154.10, intron 3 of 7) 13357 ENSMUSG00000112461.1 ENSMUSG00000112461 ENSMUST00000219933 Gm47625 TEC Interval_46301 chr13 63540675 63542223 + 0 NA intron (ENSMUSG00000021466.12, intron 5 of 21) protein_coding-intron (ENSMUSG00000021466.12, intron 8 of 22) -1771 ENSMUSG00000021466.12 ENSMUSG00000021466 ENSMUST00000220588 Ptch1 protein_coding Interval_148900 chr7 89933046 89933311 + 0 NA intron (ENSMUSG00000062797.14, intron 1 of 2) protein_coding-intron (ENSMUSG00000062797.14, intron 3 of 5) 8021 ENSMUSG00000062797.14 ENSMUSG00000062797 ENSMUST00000207695 Hikeshi protein_coding Interval_62384 chr15 91386252 91387458 + 0 NA intron (ENSMUSG00000036298.10, intron 4 of 9) protein_coding-intron (ENSMUSG00000036298.10, intron 4 of 9) 25362 ENSMUSG00000036298.10 ENSMUSG00000036298 ENSMUST00000109282 Slc2a13 protein_coding Interval_46100 chr13 61718158 61718888 + 0 NA intron (ENSMUSG00000113295.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000113295.1, intron 1 of 2) -5065 ENSMUSG00000113899.1 ENSMUSG00000113899 ENSMUST00000222177 Gm9595 processed_pseudogene Interval_28883 chr11 79039281 79039859 + 0 NA intron (ENSMUSG00000018334.18, intron 5 of 18) protein_coding-intron (ENSMUSG00000018334.18, intron 6 of 18) 15973 ENSMUSG00000085941.1 ENSMUSG00000085941 ENSMUST00000143473 Gm11201 antisense Interval_37826 chr12 72307656 72307909 + 0 NA intron (ENSMUSG00000021087.18, intron 2 of 8) protein_coding-intron (ENSMUSG00000021087.18, intron 2 of 8) -71234 ENSMUSG00000021087.18 ENSMUSG00000021087 ENSMUST00000221756 Rtn1 protein_coding Interval_116541 chr4 115232372 115233750 + 0 NA Intergenic Intergenic 8521 ENSMUSG00000081138.1 ENSMUSG00000081138 ENSMUST00000121855 Gm12834 processed_pseudogene Interval_67765 chr16 56985890 56987169 + 0 NA Intergenic Intergenic 4826 ENSMUSG00000116866.1 ENSMUSG00000116866 ENSMUST00000232096 Gm8938 processed_pseudogene Interval_34170 chr11 121053338 121054140 + 0 NA TTS (ENSMUSG00000039364.13) protein_coding-TTS (ENSMUSG00000039364.13) 2624 ENSMUSG00000039364.13 ENSMUSG00000039364 ENSMUST00000150577 Sectm1b protein_coding Interval_47359 chr13 81814690 81816736 + 0 NA Intergenic Intergenic 31326 ENSMUSG00000021537.9 ENSMUSG00000021537 ENSMUST00000224168 Cetn3 protein_coding Interval_145761 chr7 38118068 38119141 + 0 NA Intergenic Intergenic -19235 ENSMUSG00000002068.16 ENSMUSG00000002068 ENSMUST00000124979 Ccne1 protein_coding Interval_7513 chr1 131933655 131935045 + 0 NA exon (ENSMUSG00000026434.12, exon 7 of 7) protein_coding-exon (ENSMUSG00000026434.12, exon 7 of 7) -1380 ENSMUSG00000103975.1 ENSMUSG00000103975 ENSMUST00000195496 Gm37676 TEC Interval_34068 chr11 120289685 120290895 + 0 NA exon (ENSMUSG00000039741.15, exon 28 of 28) protein_coding-exon (ENSMUSG00000039741.15, exon 28 of 28) 497 ENSMUSG00000039741.15 ENSMUSG00000039741 ENSMUST00000143667 Bahcc1 protein_coding Interval_86034 chr19 35177838 35178272 + 0 NA Intergenic Intergenic -25180 ENSMUSG00000089087.1 ENSMUSG00000089087 ENSMUST00000158462 Gm24006 snoRNA Interval_130151 chr5 124551483 124554015 + 0 NA promoter-TSS (ENSMUSG00000029389.17) protein_coding-promoter-TSS (ENSMUSG00000029389.17) -2912 ENSMUSG00000029389.17 ENSMUSG00000029389 ENSMUST00000142451 Ddx55 protein_coding Interval_134961 chr6 34149841 34150472 + 0 NA Intergenic Intergenic -1773 ENSMUSG00000087356.1 ENSMUSG00000087356 ENSMUST00000126498 Gm13856 antisense Interval_47542 chr13 87313350 87314631 + 0 NA Intergenic Intergenic 6264 ENSMUSG00000114750.1 ENSMUSG00000114750 ENSMUST00000225883 Gm18265 processed_pseudogene Interval_14536 chr10 35091075 35091310 + 0 NA Intergenic Intergenic -21006 ENSMUSG00000077749.1 ENSMUSG00000077749 ENSMUST00000104561 Gm26341 snoRNA Interval_29420 chr11 83883913 83884131 + 0 NA intron (ENSMUSG00000020679.11, intron 5 of 8) protein_coding-intron (ENSMUSG00000020679.11, intron 5 of 8) 31780 ENSMUSG00000020679.11 ENSMUSG00000020679 ENSMUST00000108113 Hnf1b protein_coding Interval_145067 chr7 29852993 29853959 + 0 NA promoter-TSS (ENSMUSG00000050855.16) protein_coding-promoter-TSS (ENSMUSG00000050855.16) 165 ENSMUSG00000050855.16 ENSMUSG00000050855 ENSMUST00000128205 Zfp940 protein_coding Interval_120148 chr4 143029292 143030135 + 0 NA intron (ENSMUSG00000110067.2, intron 1 of 1) protein_coding-intron (ENSMUSG00000110067.2, intron 1 of 2) 44053 ENSMUSG00000110067.2 ENSMUSG00000110067 ENSMUST00000238915 6330411D24Rik protein_coding Interval_113762 chr4 58419353 58419638 + 0 NA Intergenic Intergenic 21603 ENSMUSG00000093293.1 ENSMUSG00000093293 ENSMUST00000175552 Mir3095 miRNA Interval_144070 chr7 19295688 19296401 + 0 NA exon (ENSMUSG00000030401.16, exon 10 of 10) protein_coding-exon (ENSMUSG00000030401.16, exon 10 of 10) 4726 ENSMUSG00000097266.1 ENSMUSG00000097266 ENSMUST00000181066 Gm26802 lincRNA Interval_33167 chr11 114875428 114876316 + 0 NA Intergenic Intergenic -14422 ENSMUSG00000034652.12 ENSMUSG00000034652 ENSMUST00000153245 Cd300a protein_coding Interval_142072 chr6 136947070 136948292 + 0 NA intron (ENSMUSG00000064330.9, intron 2 of 4) protein_coding-intron (ENSMUSG00000064330.9, intron 2 of 4) -5813 ENSMUSG00000030220.13 ENSMUSG00000030220 ENSMUST00000154440 Arhgdib protein_coding Interval_46255 chr13 63071663 63073180 + 0 NA intron (ENSMUSG00000021458.17, intron 1 of 7) protein_coding-intron (ENSMUSG00000021458.17, intron 4 of 15) -61630 ENSMUSG00000113257.1 ENSMUSG00000113257 ENSMUST00000223302 Gm30409 sense_intronic Interval_163976 chr9 30137391 30138814 + 0 NA Intergenic Intergenic -29473 ENSMUSG00000111304.1 ENSMUSG00000111304 ENSMUST00000217527 Gm47677 lincRNA Interval_173528 chrX 98743515 98744070 + 0 NA intron (ENSMUSG00000031214.13, intron 4 of 4) protein_coding-intron (ENSMUSG00000031214.13, intron 5 of 24) -16380 ENSMUSG00000099037.1 ENSMUSG00000099037 ENSMUST00000185074 Gm27554 miRNA Interval_170871 chr9 111422295 111422675 + 0 NA Intergenic Intergenic 11051 ENSMUSG00000105592.1 ENSMUSG00000105592 ENSMUST00000198173 Gm42527 TEC Interval_87542 chr19 53343810 53344360 + 0 NA intron (ENSMUSG00000025025.14, intron 2 of 4) protein_coding-intron (ENSMUSG00000025025.14, intron 2 of 5) 14624 ENSMUSG00000025025.14 ENSMUSG00000025025 ENSMUST00000237295 Mxi1 protein_coding Interval_160189 chr8 107025546 107025946 + 0 NA Intergenic Intergenic 5442 ENSMUSG00000085464.1 ENSMUSG00000085464 ENSMUST00000128476 Gm16208 antisense Interval_147798 chr7 73616987 73619292 + 0 NA Intergenic Intergenic 9191 ENSMUSG00000108724.1 ENSMUSG00000108724 ENSMUST00000206025 Gm44734 lincRNA Interval_47440 chr13 84269842 84270486 + 0 NA intron (ENSMUSG00000035762.11, intron 4 of 4) protein_coding-intron (ENSMUSG00000035762.11, intron 4 of 11) -4680 ENSMUSG00000114602.1 ENSMUSG00000114602 ENSMUST00000224744 Gm49223 sense_intronic Interval_66317 chr16 33108050 33108293 + 0 NA intron (ENSMUSG00000022802.2, intron 14 of 16) protein_coding-intron (ENSMUSG00000022802.2, intron 14 of 16) 430 ENSMUSG00000078489.2 ENSMUSG00000078489 ENSMUST00000105610 Gm17106 processed_transcript Interval_140812 chr6 121531965 121532190 + 0 NA Intergenic Intergenic -6119 ENSMUSG00000107923.1 ENSMUSG00000107923 ENSMUST00000205071 Gm43922 processed_pseudogene Interval_11584 chr1 182983047 182983736 + 0 NA Intergenic Intergenic 7115 ENSMUSG00000104367.1 ENSMUSG00000104367 ENSMUST00000195603 Gm38079 lincRNA Interval_144948 chr7 29061453 29062188 + 0 NA intron (ENSMUSG00000030592.18, intron 65 of 108) protein_coding-intron (ENSMUSG00000030592.18, intron 64 of 105) -9817 ENSMUSG00000097079.2 ENSMUSG00000097079 ENSMUST00000209109 Gm26604 antisense Interval_125457 chr5 67284343 67284645 + 0 NA intron (ENSMUSG00000037720.16, intron 5 of 5) protein_coding-intron (ENSMUSG00000037720.16, intron 7 of 7) -23232 ENSMUSG00000107319.1 ENSMUSG00000107319 ENSMUST00000201816 Gm42670 antisense Interval_98063 chr2 147338479 147339610 + 0 NA Intergenic Intergenic -13957 ENSMUSG00000084774.1 ENSMUSG00000084774 ENSMUST00000127688 Gm14110 lincRNA Interval_69818 chr16 96934622 96934852 + 0 NA intron (ENSMUSG00000050272.10, intron 3 of 32) protein_coding-intron (ENSMUSG00000050272.10, intron 3 of 32) 16005 ENSMUSG00000117324.1 ENSMUSG00000117324 ENSMUST00000232718 Gm32432 antisense Interval_11592 chr1 183061540 183062914 + 0 NA Intergenic Intergenic -12379 ENSMUSG00000094807.2 ENSMUSG00000094807 ENSMUST00000178492 Gm24975 miRNA Interval_145798 chr7 38816371 38816655 + 0 NA TTS (ENSMUSG00000101470.1) unprocessed_pseudogene-TTS (ENSMUSG00000101470.1) 4248 ENSMUSG00000101470.1 ENSMUSG00000101470 ENSMUST00000185932 Gm21129 unprocessed_pseudogene Interval_19534 chr10 102445034 102445387 + 0 NA Intergenic Intergenic 9941 ENSMUSG00000112073.1 ENSMUSG00000112073 ENSMUST00000219113 Gm47101 lincRNA Interval_63294 chr15 100150001 100150628 + 0 NA intron (ENSMUSG00000023026.16, intron 4 of 37) protein_coding-intron (ENSMUSG00000023026.16, intron 4 of 37) -12413 ENSMUSG00000023026.16 ENSMUSG00000023026 ENSMUST00000135658 Dip2b protein_coding Interval_56586 chr14 120526536 120526941 + 0 NA Intergenic Intergenic 48294 ENSMUSG00000051615.14 ENSMUSG00000051615 ENSMUST00000062117 Rap2a protein_coding Interval_107824 chr3 115858331 115859498 + 0 NA Intergenic Intergenic -28938 ENSMUSG00000033554.17 ENSMUSG00000033554 ENSMUST00000199970 Dph5 protein_coding Interval_68043 chr16 64657282 64657489 + 0 NA Intergenic Intergenic -54977 ENSMUSG00000068167.6 ENSMUSG00000068167 ENSMUST00000089279 Csnka2ip protein_coding Interval_157091 chr8 65085881 65086154 + 0 NA exon (ENSMUSG00000074300.4, exon 3 of 3) protein_coding-exon (ENSMUSG00000074300.4, exon 3 of 3) 6529 ENSMUSG00000109711.1 ENSMUSG00000109711 ENSMUST00000209586 Gm45445 processed_pseudogene Interval_5473 chr1 89101730 89104129 + 0 NA intron (ENSMUSG00000036206.12, intron 1 of 2) protein_coding-intron (ENSMUSG00000036206.12, intron 1 of 5) 5856 ENSMUSG00000102700.1 ENSMUSG00000102700 ENSMUST00000195426 Gm38312 TEC Interval_3726 chr1 62351861 62352149 + 0 NA intron (ENSMUSG00000052062.14, intron 18 of 21) protein_coding-intron (ENSMUSG00000052062.14, intron 17 of 21) 104852 ENSMUSG00000102359.1 ENSMUSG00000102359 ENSMUST00000195466 Gm38351 TEC Interval_110648 chr4 5701598 5702133 + 0 NA intron (ENSMUSG00000049119.14, intron 2 of 3) protein_coding-intron (ENSMUSG00000049119.14, intron 1 of 2) -14063 ENSMUSG00000077392.1 ENSMUSG00000077392 ENSMUST00000104204 Gm24337 snoRNA Interval_108742 chr3 130901032 130901628 + 0 NA promoter-TSS (ENSMUSG00000104579.1) TEC-promoter-TSS (ENSMUSG00000104579.1) -335 ENSMUSG00000104579.1 ENSMUSG00000104579 ENSMUST00000199219 5830437K03Rik TEC Interval_163098 chr9 15269725 15270065 + 0 NA TTS (ENSMUSG00000031935.9) protein_coding-TTS (ENSMUSG00000031935.9) 10008 ENSMUSG00000031935.9 ENSMUSG00000031935 ENSMUST00000216406 Med17 protein_coding Interval_134555 chr6 29516834 29517623 + 0 NA Intergenic Intergenic 9503 ENSMUSG00000097137.1 ENSMUSG00000097137 ENSMUST00000181540 Gm26627 antisense Interval_2921 chr1 50399962 50400801 + 0 NA Intergenic Intergenic -2302 ENSMUSG00000100451.1 ENSMUSG00000100451 ENSMUST00000191457 Gm29665 lincRNA Interval_21318 chr10 127924125 127924921 + 0 NA Intergenic Intergenic 3454 ENSMUSG00000085993.2 ENSMUSG00000085993 ENSMUST00000137042 Gm15905 processed_pseudogene Interval_47978 chr13 94828020 94828951 + 0 NA intron (ENSMUSG00000042043.6, intron 1 of 3) protein_coding-intron (ENSMUSG00000042043.6, intron 1 of 3) 10751 ENSMUSG00000042043.6 ENSMUSG00000042043 ENSMUST00000220561 Tbca protein_coding Interval_137620 chr6 76130054 76130391 + 0 NA Intergenic Intergenic 8595 ENSMUSG00000107685.1 ENSMUSG00000107685 ENSMUST00000204107 Gm5995 processed_pseudogene Interval_113470 chr4 55236254 55236773 + 0 NA intron (ENSMUSG00000087614.1, intron 1 of 2) lincRNA-intron (ENSMUSG00000087614.1, intron 1 of 2) -18227 ENSMUSG00000081504.3 ENSMUSG00000081504 ENSMUST00000121282 Gm12508 processed_pseudogene Interval_136079 chr6 50551191 50551855 + 0 NA Intergenic Intergenic -11489 ENSMUSG00000077357.1 ENSMUSG00000077357 ENSMUST00000104169 Gm26289 snoRNA Interval_87522 chr19 53232770 53233821 + 0 NA intron (ENSMUSG00000025026.15, intron 7 of 14) protein_coding-intron (ENSMUSG00000025026.15, intron 7 of 15) 21895 ENSMUSG00000118314.1 ENSMUSG00000118314 ENSMUST00000237379 1700001K23Rik lincRNA Interval_61609 chr15 82936906 82937123 + 0 NA intron (ENSMUSG00000041852.15, intron 1 of 1) protein_coding-intron (ENSMUSG00000041852.15, intron 1 of 1) 22282 ENSMUSG00000092751.1 ENSMUSG00000092751 ENSMUST00000175010 Mir3080 miRNA Interval_89428 chr2 20628223 20629510 + 0 NA intron (ENSMUSG00000036617.17, intron 1 of 2) protein_coding-intron (ENSMUSG00000036617.17, intron 3 of 18) 69062 ENSMUSG00000098575.1 ENSMUSG00000098575 ENSMUST00000183963 Gm27446 misc_RNA Interval_52108 chr14 36520526 36521180 + 0 NA Intergenic Intergenic -91264 ENSMUSG00000088766.1 ENSMUSG00000088766 ENSMUST00000158141 Gm24394 snoRNA Interval_170416 chr9 107770378 107771474 + 0 NA promoter-TSS (ENSMUSG00000032580.12) protein_coding-promoter-TSS (ENSMUSG00000032580.12) 8118 ENSMUSG00000102899.1 ENSMUSG00000102899 ENSMUST00000194573 Gm37850 antisense Interval_112165 chr4 35096363 35097012 + 0 NA intron (ENSMUSG00000073910.10, intron 1 of 1) protein_coding-intron (ENSMUSG00000073910.10, intron 1 of 3) -55369 ENSMUSG00000042993.6 ENSMUSG00000042993 ENSMUST00000058595 Ifnk protein_coding Interval_17950 chr10 81031033 81031869 + 0 NA exon (ENSMUSG00000046822.14, exon 4 of 4) protein_coding-exon (ENSMUSG00000046822.14, exon 4 of 4) 2461 ENSMUSG00000046822.14 ENSMUSG00000046822 ENSMUST00000152177 Slc39a3 protein_coding Interval_39599 chr12 91378024 91378265 + 0 NA intron (ENSMUSG00000061533.16, intron 2 of 25) protein_coding-intron (ENSMUSG00000061533.16, intron 2 of 13) -6419 ENSMUSG00000020963.15 ENSMUSG00000020963 ENSMUST00000186437 Tshr protein_coding Interval_155430 chr8 33547192 33548040 + 0 NA intron (ENSMUSG00000009628.14, intron 5 of 5) protein_coding-intron (ENSMUSG00000009628.14, intron 4 of 7) 30878 ENSMUSG00000009628.14 ENSMUSG00000009628 ENSMUST00000009772 Tex15 protein_coding Interval_131120 chr5 135257672 135258801 + 0 NA Intergenic Intergenic -6090 ENSMUSG00000106913.1 ENSMUSG00000106913 ENSMUST00000201947 9430007M09Rik TEC Interval_51177 chr14 24481832 24482635 + 0 NA intron (ENSMUSG00000025280.8, intron 5 of 29) protein_coding-intron (ENSMUSG00000025280.8, intron 5 of 30) -2808 ENSMUSG00000025280.8 ENSMUSG00000025280 ENSMUST00000225014 Polr3a protein_coding Interval_99304 chr2 158800639 158801526 + 0 NA intron (ENSMUSG00000027655.14, intron 1 of 1) protein_coding-intron (ENSMUSG00000027655.14, intron 1 of 20) 19674 ENSMUSG00000027654.2 ENSMUSG00000027654 ENSMUST00000151801 Fam83d protein_coding Interval_56910 chr14 123137654 123138206 + 0 NA intron (ENSMUSG00000115016.1, intron 1 of 3) processed_transcript-intron (ENSMUSG00000115016.1, intron 1 of 3) 27555 ENSMUSG00000115758.1 ENSMUSG00000115758 ENSMUST00000226283 Gm49294 processed_pseudogene Interval_146870 chr7 54138430 54138727 + 0 NA Intergenic Intergenic 74807 ENSMUSG00000092856.2 ENSMUSG00000092856 ENSMUST00000175115 Gm25956 miRNA Interval_174132 chrX 135993153 135994249 + 0 NA promoter-TSS (ENSMUSG00000048040.8) protein_coding-promoter-TSS (ENSMUSG00000048040.8) -123 ENSMUSG00000048040.8 ENSMUSG00000048040 ENSMUST00000058119 Arxes2 protein_coding Interval_107682 chr3 110522699 110522986 + 0 NA Intergenic Intergenic 41559 ENSMUSG00000105121.1 ENSMUSG00000105121 ENSMUST00000200356 Gm43406 processed_pseudogene Interval_56690 chr14 121400160 121400720 + 0 NA Intergenic Intergenic -14484 ENSMUSG00000115666.1 ENSMUSG00000115666 ENSMUST00000228299 Gm49031 processed_pseudogene Interval_24200 chr11 31248263 31248731 + 0 NA Intergenic Intergenic -64123 ENSMUSG00000079890.2 ENSMUSG00000079890 ENSMUST00000116006 Gm12106 unprocessed_pseudogene Interval_31748 chr11 102603322 102606032 + 0 NA exon (ENSMUSG00000050288.6, exon 1 of 1) protein_coding-exon (ENSMUSG00000050288.6, exon 1 of 1) 281 ENSMUSG00000050288.6 ENSMUSG00000050288 ENSMUST00000057893 Fzd2 protein_coding Interval_122422 chr5 22488833 22490149 + 0 NA intron (ENSMUSG00000029012.11, intron 12 of 12) protein_coding-intron (ENSMUSG00000029012.11, intron 13 of 13) -16499 ENSMUSG00000105081.1 ENSMUSG00000105081 ENSMUST00000198877 Gm43110 processed_pseudogene Interval_89113 chr2 16654089 16654402 + 0 NA intron (ENSMUSG00000026748.13, intron 2 of 8) protein_coding-intron (ENSMUSG00000026748.13, intron 6 of 13) 15549 ENSMUSG00000026748.13 ENSMUSG00000026748 ENSMUST00000126173 Plxdc2 protein_coding Interval_94768 chr2 94152472 94152827 + 0 NA intron (ENSMUSG00000027195.10, intron 1 of 2) protein_coding-intron (ENSMUSG00000027195.10, intron 1 of 10) 31481 ENSMUSG00000093033.1 ENSMUSG00000093033 ENSMUST00000175292 Gm23630 miRNA Interval_151096 chr7 118526069 118526295 + 0 NA TTS (ENSMUSG00000030652.11) protein_coding-TTS (ENSMUSG00000030652.11) 7115 ENSMUSG00000030652.11 ENSMUSG00000030652 ENSMUST00000127700 Coq7 protein_coding Interval_59825 chr15 59571526 59571901 + 0 NA intron (ENSMUSG00000059586.10, intron 5 of 7) protein_coding-intron (ENSMUSG00000059586.10, intron 4 of 6) -46877 ENSMUSG00000115896.1 ENSMUSG00000115896 ENSMUST00000229684 Gm36677 lincRNA Interval_165753 chr9 52174966 52175814 + 0 NA Intergenic Intergenic -6818 ENSMUSG00000035164.8 ENSMUSG00000035164 ENSMUST00000165519 Zc3h12c protein_coding Interval_57397 chr15 10575073 10575293 + 0 NA exon (ENSMUSG00000022246.14, exon 15 of 18) protein_coding-exon (ENSMUSG00000022246.14, exon 15 of 18) -13659 ENSMUSG00000052482.6 ENSMUSG00000052482 ENSMUST00000064353 Gm8174 processed_pseudogene Interval_169493 chr9 98432858 98433786 + 0 NA intron (ENSMUSG00000046402.10, intron 2 of 3) protein_coding-intron (ENSMUSG00000046402.10, intron 2 of 3) 10361 ENSMUSG00000046402.10 ENSMUSG00000046402 ENSMUST00000052068 Rbp1 protein_coding Interval_67882 chr16 58568465 58569098 + 0 NA Intergenic Intergenic -13076 ENSMUSG00000116914.1 ENSMUSG00000116914 ENSMUST00000231586 Gm20942 processed_pseudogene Interval_78549 chr18 14642031 14642285 + 0 NA intron (ENSMUSG00000037013.17, intron 4 of 4) protein_coding-intron (ENSMUSG00000037013.17, intron 5 of 10) -4752 ENSMUSG00000037013.17 ENSMUSG00000037013 ENSMUST00000234544 Ss18 protein_coding Interval_128847 chr5 115568651 115569933 + 0 NA intron (ENSMUSG00000041638.18, intron 1 of 14) protein_coding-intron (ENSMUSG00000041638.18, intron 1 of 57) 3989 ENSMUSG00000041638.18 ENSMUSG00000041638 ENSMUST00000137523 Gcn1 protein_coding Interval_112201 chr4 35589039 35589247 + 0 NA Intergenic Intergenic 152929 ENSMUSG00000083851.1 ENSMUSG00000083851 ENSMUST00000117931 Gm12365 processed_pseudogene Interval_92406 chr2 59582890 59583354 + 0 NA Intergenic Intergenic -18438 ENSMUSG00000081157.1 ENSMUSG00000081157 ENSMUST00000118837 Gm13552 processed_pseudogene Interval_161860 chr8 123261399 123261611 + 0 NA intron (ENSMUSG00000001065.15, intron 6 of 9) protein_coding-intron (ENSMUSG00000001065.15, intron 6 of 10) 5530 ENSMUSG00000001065.15 ENSMUSG00000001065 ENSMUST00000130333 Zfp276 protein_coding Interval_110715 chr4 6797573 6797959 + 0 NA intron (ENSMUSG00000041272.11, intron 4 of 4) protein_coding-intron (ENSMUSG00000041272.11, intron 3 of 8) 109597 ENSMUSG00000086052.1 ENSMUSG00000086052 ENSMUST00000137749 Gm11802 antisense Interval_117610 chr4 125029525 125030561 + 0 NA promoter-TSS (ENSMUSG00000028869.13) protein_coding-promoter-TSS (ENSMUSG00000028869.13) 10543 ENSMUSG00000080934.1 ENSMUSG00000080934 ENSMUST00000117046 Gm12931 processed_pseudogene Interval_124423 chr5 45978014 45978546 + 0 NA Intergenic Intergenic -45871 ENSMUSG00000106602.1 ENSMUSG00000106602 ENSMUST00000198088 4930405L22Rik lincRNA Interval_141638 chr6 131609689 131610506 + 0 NA Intergenic Intergenic -1226 ENSMUSG00000062477.5 ENSMUSG00000062477 ENSMUST00000082150 Hmgb1l processed_pseudogene Interval_56913 chr14 123195507 123195735 + 0 NA intron (ENSMUSG00000115016.1, intron 4 of 4) processed_transcript-intron (ENSMUSG00000115016.1, intron 4 of 4) -30136 ENSMUSG00000115758.1 ENSMUSG00000115758 ENSMUST00000226283 Gm49294 processed_pseudogene Interval_123177 chr5 30391549 30392084 + 0 NA intron (ENSMUSG00000062372.13, intron 11 of 45) protein_coding-intron (ENSMUSG00000062372.13, intron 11 of 46) 25770 ENSMUSG00000106311.1 ENSMUSG00000106311 ENSMUST00000200001 Gm43755 sense_intronic Interval_32464 chr11 107686074 107686845 + 0 NA TTS (ENSMUSG00000020721.16) protein_coding-TTS (ENSMUSG00000020721.16) 15407 ENSMUSG00000020721.16 ENSMUSG00000020721 ENSMUST00000153080 Helz protein_coding Interval_120694 chr4 150144002 150144773 + 0 NA TTS (ENSMUSG00000028976.10) protein_coding-TTS (ENSMUSG00000028976.10) 4834 ENSMUSG00000028976.10 ENSMUSG00000028976 ENSMUST00000151504 Slc2a5 protein_coding Interval_90327 chr2 29787475 29788723 + 0 NA promoter-TSS (ENSMUSG00000026798.10) protein_coding-promoter-TSS (ENSMUSG00000026798.10) -121 ENSMUSG00000026798.10 ENSMUSG00000026798 ENSMUST00000138233 Coq4 protein_coding Interval_42806 chr13 19814448 19815021 + 0 NA intron (ENSMUSG00000053101.3, intron 1 of 1) protein_coding-intron (ENSMUSG00000053101.3, intron 1 of 4) -6005 ENSMUSG00000113542.1 ENSMUSG00000113542 ENSMUST00000223330 Gm19154 processed_pseudogene Interval_135486 chr6 39585329 39585554 + 0 NA promoter-TSS (ENSMUSG00000107071.1) protein_coding-promoter-TSS (ENSMUSG00000107071.1) -312 ENSMUSG00000107071.1 ENSMUSG00000107071 ENSMUST00000126621 Gm42420 protein_coding Interval_1618 chr1 30066494 30066861 + 0 NA Intergenic Intergenic 80743 ENSMUSG00000096829.1 ENSMUSG00000096829 ENSMUST00000178702 Gm23771 miRNA Interval_82467 chr18 74252299 74253272 + 0 NA Intergenic Intergenic 11895 ENSMUSG00000118151.1 ENSMUSG00000118151 ENSMUST00000238110 Gm5690 processed_pseudogene Interval_12150 chr1 190152881 190153250 + 0 NA intron (ENSMUSG00000010175.13, intron 3 of 4) protein_coding-intron (ENSMUSG00000010175.13, intron 3 of 4) -15605 ENSMUSG00000099404.1 ENSMUSG00000099404 ENSMUST00000189880 Gm28172 antisense Interval_150175 chr7 107611124 107611559 + 0 NA intron (ENSMUSG00000036528.16, intron 1 of 25) protein_coding-intron (ENSMUSG00000036528.16, intron 1 of 24) 13820 ENSMUSG00000049740.2 ENSMUSG00000049740 ENSMUST00000060348 5330417H12Rik TEC Interval_79632 chr18 34108157 34109542 + 0 NA Intergenic Intergenic 15404 ENSMUSG00000077263.1 ENSMUSG00000077263 ENSMUST00000104075 Gm24432 snoRNA Interval_138844 chr6 92495185 92496485 + 0 NA intron (ENSMUSG00000030020.13, intron 2 of 8) protein_coding-intron (ENSMUSG00000030020.13, intron 2 of 8) -65942 ENSMUSG00000098130.1 ENSMUSG00000098130 ENSMUST00000182175 Gm17797 processed_pseudogene Interval_150371 chr7 109985645 109986996 + 0 NA promoter-TSS (ENSMUSG00000047554.14) protein_coding-promoter-TSS (ENSMUSG00000047554.14) -33 ENSMUSG00000047554.14 ENSMUSG00000047554 ENSMUST00000207300 Tmem41b protein_coding Interval_35477 chr12 22954776 22955097 + 0 NA intron (ENSMUSG00000113670.1, intron 2 of 2) lincRNA-intron (ENSMUSG00000073164.11, intron 3 of 3) 5370 ENSMUSG00000113670.1 ENSMUSG00000113670 ENSMUST00000222206 Gm49686 transcribed_unprocessed_pseudogene Interval_138567 chr6 89380257 89381453 + 0 NA Intergenic Intergenic 35715 ENSMUSG00000107570.1 ENSMUSG00000107570 ENSMUST00000204568 Gm44207 TEC Interval_172239 chrX 11668717 11668974 + 0 NA Intergenic Intergenic 15279 ENSMUSG00000080811.1 ENSMUSG00000080811 ENSMUST00000117403 Gm14513 processed_pseudogene Interval_124025 chr5 37354375 37354660 + 0 NA intron (ENSMUSG00000050248.11, intron 5 of 11) protein_coding-intron (ENSMUSG00000050248.11, intron 5 of 19) -35387 ENSMUSG00000050248.11 ENSMUSG00000050248 ENSMUST00000159854 Evc2 protein_coding Interval_3200 chr1 54768920 54769241 + 0 NA promoter-TSS (ENSMUSG00000089245.1) miRNA-promoter-TSS (ENSMUSG00000089245.1) -138 ENSMUSG00000089245.1 ENSMUSG00000089245 ENSMUST00000158620 Gm24053 miRNA Interval_17922 chr10 80843029 80844521 + 0 NA promoter-TSS (ENSMUSG00000051067.8) protein_coding-promoter-TSS (ENSMUSG00000051067.8) 23 ENSMUSG00000051067.8 ENSMUSG00000051067 ENSMUST00000219924 Lingo3 protein_coding Interval_25360 chr11 46657981 46658309 + 0 NA Intergenic Intergenic -11186 ENSMUSG00000080970.1 ENSMUSG00000080970 ENSMUST00000117622 Gm12173 unprocessed_pseudogene Interval_12120 chr1 189867768 189868299 + 0 NA intron (ENSMUSG00000026604.17, intron 18 of 18) protein_coding-intron (ENSMUSG00000026604.17, intron 17 of 17) -11902 ENSMUSG00000104435.1 ENSMUSG00000104435 ENSMUST00000193794 Gm37422 antisense Interval_116676 chr4 116607002 116607986 + 0 NA intron (ENSMUSG00000028693.15, intron 4 of 12) protein_coding-intron (ENSMUSG00000028693.15, intron 7 of 15) -1246 ENSMUSG00000028693.15 ENSMUSG00000028693 ENSMUST00000148436 Nasp protein_coding Interval_149193 chr7 96171448 96171645 + 0 NA intron (ENSMUSG00000048078.16, intron 1 of 32) protein_coding-intron (ENSMUSG00000048078.16, intron 1 of 32) 31990 ENSMUSG00000108528.1 ENSMUSG00000108528 ENSMUST00000205708 Gm8319 processed_pseudogene Interval_15285 chr10 44094211 44094661 + 0 NA intron (ENSMUSG00000019866.15, intron 1 of 21) protein_coding-intron (ENSMUSG00000019866.15, intron 1 of 21) -35658 ENSMUSG00000019866.15 ENSMUSG00000019866 ENSMUST00000239010 Crybg1 protein_coding Interval_173877 chrX 106794795 106795292 + 0 NA Intergenic Intergenic -26897 ENSMUSG00000080841.1 ENSMUSG00000080841 ENSMUST00000117581 Gm14880 processed_pseudogene Interval_45613 chr13 56258231 56261007 + 0 NA Intergenic Intergenic -7456 ENSMUSG00000048904.5 ENSMUSG00000048904 ENSMUST00000058475 Neurog1 protein_coding Interval_156670 chr8 56625680 56625965 + 0 NA Intergenic Intergenic 37902 ENSMUSG00000038206.13 ENSMUSG00000038206 ENSMUST00000211294 Fbxo8 protein_coding Interval_112516 chr4 41730801 41731742 + 0 NA promoter-TSS (ENSMUSG00000066224.14) protein_coding-promoter-TSS (ENSMUSG00000066224.14) -129 ENSMUSG00000066224.14 ENSMUSG00000066224 ENSMUST00000150809 Arid3c protein_coding Interval_137769 chr6 82249811 82250167 + 0 NA Intergenic Intergenic 7815 ENSMUSG00000108224.1 ENSMUSG00000108224 ENSMUST00000204563 Gm31861 processed_pseudogene Interval_50252 chr14 11307280 11307644 + 0 NA intron (ENSMUSG00000097148.2, intron 3 of 3) protein_coding-intron (ENSMUSG00000097148.2, intron 3 of 3) 24985 ENSMUSG00000099218.1 ENSMUSG00000099218 ENSMUST00000184251 Mir5124b miRNA Interval_70984 chr17 16996885 16998044 + 0 NA Intergenic Intergenic 45912 ENSMUSG00000060149.7 ENSMUSG00000060149 ENSMUST00000071374 BC002059 lincRNA Interval_85063 chr19 21943670 21943911 + 0 NA intron (ENSMUSG00000118237.1, intron 2 of 2) lincRNA-intron (ENSMUSG00000118237.1, intron 2 of 2) 6410 ENSMUSG00000045104.9 ENSMUSG00000045104 ENSMUST00000060477 Ldhb-ps processed_pseudogene Interval_96429 chr2 122467140 122468196 + 0 NA promoter-TSS (ENSMUSG00000081219.1) processed_pseudogene-promoter-TSS (ENSMUSG00000081219.1) -142 ENSMUSG00000081219.1 ENSMUSG00000081219 ENSMUST00000121525 Bambi-ps1 processed_pseudogene Interval_82999 chr18 80267208 80267671 + 0 NA intron (ENSMUSG00000034006.17, intron 4 of 4) protein_coding-intron (ENSMUSG00000034006.17, intron 3 of 4) 14097 ENSMUSG00000034006.17 ENSMUSG00000034006 ENSMUST00000155039 Slc66a2 protein_coding Interval_155612 chr8 35159445 35161352 + 0 NA Intergenic Intergenic -9952 ENSMUSG00000109678.1 ENSMUSG00000109678 ENSMUST00000210093 Gm45626 processed_pseudogene Interval_112574 chr4 43340111 43340338 + 0 NA intron (ENSMUSG00000028457.18, intron 13 of 28) protein_coding-intron (ENSMUSG00000028457.18, intron 13 of 14) 73039 ENSMUSG00000028457.18 ENSMUSG00000028457 ENSMUST00000102953 Atp8b5 protein_coding Interval_172936 chrX 56729444 56730266 + 0 NA Intergenic Intergenic 4782 ENSMUSG00000088394.1 ENSMUSG00000088394 ENSMUST00000157769 Gm26312 snRNA Interval_14086 chr10 26743686 26744212 + 0 NA Intergenic Intergenic -1393 ENSMUSG00000112675.1 ENSMUSG00000112675 ENSMUST00000219999 Gm48892 processed_pseudogene Interval_60458 chr15 73906749 73907049 + 0 NA Intergenic Intergenic 72338 ENSMUSG00000086361.1 ENSMUSG00000086361 ENSMUST00000154520 Gm6569 protein_coding Interval_59571 chr15 55440540 55441494 + 0 NA intron (ENSMUSG00000022371.16, intron 24 of 47) protein_coding-intron (ENSMUSG00000022371.16, intron 24 of 47) -1997 ENSMUSG00000101568.1 ENSMUSG00000101568 ENSMUST00000187158 1700040F17Rik antisense Interval_36318 chr12 41152281 41152539 + 0 NA intron (ENSMUSG00000056899.10, intron 3 of 5) protein_coding-intron (ENSMUSG00000056899.10, intron 4 of 6) -107471 ENSMUSG00000113994.1 ENSMUSG00000113994 ENSMUST00000220956 Gm47375 antisense Interval_22055 chr11 6035065 6035277 + 0 NA intron (ENSMUSG00000057897.14, intron 1 of 5) protein_coding-intron (ENSMUSG00000057897.14, intron 1 of 18) -51033 ENSMUSG00000057897.14 ENSMUSG00000057897 ENSMUST00000129098 Camk2b protein_coding Interval_113073 chr4 47501465 47501720 + 0 NA Intergenic Intergenic 26828 ENSMUSG00000053317.11 ENSMUSG00000053317 ENSMUST00000136685 Sec61b protein_coding Interval_94774 chr2 94218194 94219671 + 0 NA intron (ENSMUSG00000075020.6, intron 3 of 4) lincRNA-intron (ENSMUSG00000075020.6, intron 3 of 5) -22446 ENSMUSG00000106336.1 ENSMUSG00000106336 ENSMUST00000197461 Mir129b miRNA Interval_39423 chr12 87326297 87326536 + 0 NA intron (ENSMUSG00000021036.10, intron 3 of 5) protein_coding-intron (ENSMUSG00000021036.10, intron 9 of 11) 2197 ENSMUSG00000021036.10 ENSMUSG00000021036 ENSMUST00000167911 Sptlc2 protein_coding Interval_95211 chr2 104825769 104826823 + 0 NA Intergenic Intergenic 6117 ENSMUSG00000083856.1 ENSMUSG00000083856 ENSMUST00000117876 Gm13886 processed_pseudogene Interval_7066 chr1 125177250 125177826 + 0 NA Intergenic Intergenic 19917 ENSMUSG00000099574.1 ENSMUSG00000099574 ENSMUST00000187796 1700121L03Rik lincRNA Interval_2509 chr1 39871260 39871510 + 0 NA Intergenic Intergenic -24055 ENSMUSG00000101634.6 ENSMUSG00000101634 ENSMUST00000186683 1700066B17Rik lincRNA Interval_28368 chr11 75428665 75429178 + 0 NA TTS (ENSMUSG00000084224.1) processed_pseudogene-TTS (ENSMUSG00000084224.1) 1168 ENSMUSG00000084224.1 ENSMUSG00000084224 ENSMUST00000119634 Gm12337 processed_pseudogene Interval_154676 chr8 22513778 22515308 + 0 NA intron (ENSMUSG00000037656.9, intron 2 of 2) protein_coding-intron (ENSMUSG00000037656.9, intron 1 of 10) 8317 ENSMUSG00000037656.9 ENSMUSG00000037656 ENSMUST00000210388 Slc20a2 protein_coding Interval_78024 chr18 6907435 6907783 + 0 NA Intergenic Intergenic 29012 ENSMUSG00000117652.1 ENSMUSG00000117652 ENSMUST00000176586 Gm2350 sense_overlapping Interval_72791 chr17 32197416 32198264 + 0 NA TTS (ENSMUSG00000024002.18) protein_coding-TTS (ENSMUSG00000024002.18) -8291 ENSMUSG00000037577.13 ENSMUSG00000037577 ENSMUST00000162117 Ephx3 protein_coding Interval_16895 chr10 69575537 69575830 + 0 NA intron (ENSMUSG00000069601.14, intron 1 of 17) protein_coding-intron (ENSMUSG00000069601.14, intron 1 of 16) -9322 ENSMUSG00000112729.1 ENSMUSG00000112729 ENSMUST00000220152 Gm46231 processed_pseudogene Interval_23851 chr11 27095496 27096158 + 0 NA Intergenic Intergenic -8692 ENSMUSG00000088654.1 ENSMUSG00000088654 ENSMUST00000158029 Gm24850 snoRNA Interval_168581 chr9 83805247 83806712 + 0 NA exon (ENSMUSG00000032262.13, exon 1 of 6) protein_coding-exon (ENSMUSG00000032262.13, exon 1 of 6) 298 ENSMUSG00000032262.13 ENSMUSG00000032262 ENSMUST00000183614 Elovl4 protein_coding Interval_111144 chr4 13126577 13126774 + 0 NA Intergenic Intergenic 50535 ENSMUSG00000086227.1 ENSMUSG00000086227 ENSMUST00000139614 Gm11820 lincRNA Interval_20232 chr10 116323294 116323662 + 0 NA intron (ENSMUSG00000020154.10, intron 9 of 33) protein_coding-intron (ENSMUSG00000020154.10, intron 7 of 31) -17105 ENSMUSG00000065086.1 ENSMUSG00000065086 ENSMUST00000083152 Gm26495 snoRNA Interval_18090 chr10 82265441 82265828 + 0 NA TTS (ENSMUSG00000111930.1) processed_pseudogene-TTS (ENSMUSG00000111930.1) 1240 ENSMUSG00000111930.1 ENSMUSG00000111930 ENSMUST00000219873 Gm47382 processed_pseudogene Interval_124514 chr5 49969958 49970178 + 0 NA intron (ENSMUSG00000029090.12, intron 2 of 2) protein_coding-intron (ENSMUSG00000029090.12, intron 16 of 18) -25510 ENSMUSG00000104634.1 ENSMUSG00000104634 ENSMUST00000198627 Gm42461 TEC Interval_65388 chr16 22071256 22071619 + 0 NA intron (ENSMUSG00000033581.17, intron 9 of 14) protein_coding-intron (ENSMUSG00000033581.17, intron 10 of 15) 17927 ENSMUSG00000068487.6 ENSMUSG00000068487 ENSMUST00000132879 Ndufa11b processed_pseudogene Interval_159172 chr8 91355478 91356524 + 0 NA intron (ENSMUSG00000055932.15, intron 1 of 6) protein_coding-intron (ENSMUSG00000055932.15, intron 1 of 8) 35944 ENSMUSG00000110233.1 ENSMUSG00000110233 ENSMUST00000209572 Gm45427 TEC Interval_92734 chr2 64796645 64796914 + 0 NA Intergenic Intergenic 71809 ENSMUSG00000084104.1 ENSMUSG00000084104 ENSMUST00000120849 Gm13578 processed_pseudogene Interval_47782 chr13 92708581 92708924 + 0 NA TTS (ENSMUSG00000021703.9) protein_coding-TTS (ENSMUSG00000021703.9) 2970 ENSMUSG00000021703.9 ENSMUSG00000021703 ENSMUST00000224458 Serinc5 protein_coding Interval_122262 chr5 20778301 20778854 + 0 NA intron (ENSMUSG00000039987.15, intron 10 of 17) protein_coding-intron (ENSMUSG00000039987.15, intron 10 of 17) -27513 ENSMUSG00000082716.1 ENSMUSG00000082716 ENSMUST00000118086 Rpl31-ps5 processed_pseudogene Interval_27284 chr11 65255348 65255895 + 0 NA intron (ENSMUSG00000020542.18, intron 1 of 3) protein_coding-intron (ENSMUSG00000020542.18, intron 1 of 12) -73464 ENSMUSG00000020542.18 ENSMUSG00000020542 ENSMUST00000150823 Myocd protein_coding Interval_77513 chr17 90583452 90585476 + 0 NA intron (ENSMUSG00000024109.18, intron 1 of 3) protein_coding-intron (ENSMUSG00000024109.18, intron 13 of 20) -16707 ENSMUSG00000093716.1 ENSMUSG00000093716 ENSMUST00000175818 Gm19815 processed_pseudogene Interval_164322 chr9 35341104 35341379 + 0 NA Intergenic Intergenic 21872 ENSMUSG00000103259.1 ENSMUSG00000103259 ENSMUST00000193707 2610105M22Rik TEC Interval_133407 chr6 4766779 4767209 + 0 NA Intergenic Intergenic -3906 ENSMUSG00000107977.1 ENSMUSG00000107977 ENSMUST00000205169 Gm44121 TEC Interval_108972 chr3 133722760 133723007 + 0 NA Intergenic Intergenic -59492 ENSMUSG00000105952.1 ENSMUSG00000105952 ENSMUST00000197904 Gm40153 lincRNA Interval_70744 chr17 14111579 14112474 + 0 NA Intergenic Intergenic -5576 ENSMUSG00000099476.1 ENSMUSG00000099476 ENSMUST00000188802 4930488N24Rik unprocessed_pseudogene Interval_54761 chr14 74849191 74849543 + 0 NA intron (ENSMUSG00000068015.8, intron 2 of 18) protein_coding-intron (ENSMUSG00000068015.8, intron 2 of 19) -54062 ENSMUSG00000068015.8 ENSMUSG00000068015 ENSMUST00000227433 Lrch1 protein_coding Interval_34109 chr11 120686081 120687098 + 0 NA promoter-TSS (ENSMUSG00000025142.18) protein_coding-promoter-TSS (ENSMUSG00000025142.18) -22269 ENSMUSG00000025142.18 ENSMUSG00000025142 ENSMUST00000172392 Aspscr1 protein_coding Interval_96937 chr2 129695666 129696543 + 0 NA intron (ENSMUSG00000027400.11, intron 2 of 3) protein_coding-intron (ENSMUSG00000027400.11, intron 2 of 3) 3740 ENSMUSG00000027400.11 ENSMUSG00000027400 ENSMUST00000152113 Pdyn protein_coding Interval_39047 chr12 84668105 84668671 + 0 NA Intergenic Intergenic -8912 ENSMUSG00000113317.1 ENSMUSG00000113317 ENSMUST00000221117 Gm48573 antisense Interval_138219 chr6 86396288 86397436 + 0 NA promoter-TSS (ENSMUSG00000029998.14) protein_coding-promoter-TSS (ENSMUSG00000029998.14) 279 ENSMUSG00000029998.14 ENSMUSG00000029998 ENSMUST00000203960 Pcyox1 protein_coding Interval_120527 chr4 149157474 149158566 + 0 NA exon (ENSMUSG00000028961.15, exon 7 of 13) protein_coding-exon (ENSMUSG00000028961.15, exon 7 of 13) 8751 ENSMUSG00000028961.15 ENSMUSG00000028961 ENSMUST00000143944 Pgd protein_coding Interval_139957 chr6 113045618 113046806 + 0 NA promoter-TSS (ENSMUSG00000030264.14) protein_coding-promoter-TSS (ENSMUSG00000030264.14) -64 ENSMUSG00000107455.1 ENSMUSG00000107455 ENSMUST00000205187 Gm43868 TEC Interval_152417 chr7 132888878 132889858 + 0 NA promoter-TSS (ENSMUSG00000097595.2) processed_transcript-promoter-TSS (ENSMUSG00000097595.2) -681 ENSMUSG00000097595.2 ENSMUSG00000097595 ENSMUST00000180905 1500002F19Rik processed_transcript Interval_61657 chr15 83242074 83242751 + 0 NA intron (ENSMUSG00000047878.13, intron 1 of 2) protein_coding-intron (ENSMUSG00000047878.13, intron 1 of 2) 9317 ENSMUSG00000047878.13 ENSMUSG00000047878 ENSMUST00000229454 A4galt protein_coding Interval_83326 chr18 84218809 84219644 + 0 NA intron (ENSMUSG00000048410.17, intron 8 of 8) protein_coding-intron (ENSMUSG00000048410.17, intron 2 of 2) 16302 ENSMUSG00000118385.1 ENSMUSG00000118385 ENSMUST00000238064 Gm50311 antisense Interval_40660 chr12 106558468 106559184 + 0 NA promoter-TSS (ENSMUSG00000091583.1) lincRNA-promoter-TSS (ENSMUSG00000091583.1) 76 ENSMUSG00000091583.1 ENSMUSG00000091583 ENSMUST00000146663 Gm17033 lincRNA Interval_163440 chr9 21441213 21442018 + 0 NA intron (ENSMUSG00000033335.17, intron 1 of 2) protein_coding-intron (ENSMUSG00000033335.17, intron 1 of 20) 16647 ENSMUSG00000033335.17 ENSMUSG00000033335 ENSMUST00000174243 Dnm2 protein_coding Interval_56978 chr14 124619316 124619553 + 0 NA intron (ENSMUSG00000025551.13, intron 1 of 4) protein_coding-intron (ENSMUSG00000025551.13, intron 1 of 4) -6942 ENSMUSG00000114970.1 ENSMUSG00000114970 ENSMUST00000228608 Gm49069 TEC Interval_63139 chr15 99314910 99315648 + 0 NA promoter-TSS (ENSMUSG00000023007.15) protein_coding-promoter-TSS (ENSMUSG00000023007.15) 5376 ENSMUSG00000023007.15 ENSMUSG00000023007 ENSMUST00000126955 Prpf40b protein_coding Interval_24552 chr11 34318243 34318513 + 0 NA intron (ENSMUSG00000069911.11, intron 1 of 3) protein_coding-intron (ENSMUSG00000069911.11, intron 1 of 4) 3620 ENSMUSG00000069911.11 ENSMUSG00000069911 ENSMUST00000093192 Insyn2b protein_coding Interval_104634 chr3 68995132 68995354 + 0 NA promoter-TSS (ENSMUSG00000027778.15) protein_coding-promoter-TSS (ENSMUSG00000027778.15) 9282 ENSMUSG00000027778.15 ENSMUSG00000027778 ENSMUST00000192467 Ift80 protein_coding Interval_168011 chr9 75393355 75394263 + 0 NA TTS (ENSMUSG00000042688.16) protein_coding-TTS (ENSMUSG00000042688.16) 3798 ENSMUSG00000042688.16 ENSMUSG00000042688 ENSMUST00000172665 Mapk6 protein_coding Interval_63708 chr15 102966157 102968037 + 0 NA promoter-TSS (ENSMUSG00000022485.3) protein_coding-promoter-TSS (ENSMUSG00000022485.3) 301 ENSMUSG00000022484.7 ENSMUSG00000022484 ENSMUST00000001699 Hoxc10 protein_coding Interval_110998 chr4 11112675 11114168 + 0 NA Intergenic Intergenic -9384 ENSMUSG00000086765.7 ENSMUSG00000086765 ENSMUST00000142297 Gm11827 lincRNA Interval_108355 chr3 125027183 125027392 + 0 NA Intergenic Intergenic 15986 ENSMUSG00000098033.2 ENSMUSG00000098033 ENSMUST00000182285 Gm9381 processed_pseudogene Interval_20419 chr10 117447098 117447861 + 0 NA promoter-TSS (ENSMUSG00000112344.1) lincRNA-promoter-TSS (ENSMUSG00000112344.1) 14 ENSMUSG00000112344.1 ENSMUSG00000112344 ENSMUST00000220189 Gm32141 lincRNA Interval_38298 chr12 76981689 76982250 + 0 NA intron (ENSMUSG00000112857.1, intron 1 of 3) lincRNA-intron (ENSMUSG00000112857.1, intron 1 of 3) 9509 ENSMUSG00000112857.1 ENSMUSG00000112857 ENSMUST00000219581 Gm35041 lincRNA Interval_149002 chr7 91397755 91398216 + 0 NA intron (ENSMUSG00000052572.19, intron 1 of 13) protein_coding-intron (ENSMUSG00000052572.19, intron 1 of 22) -5296 ENSMUSG00000088216.1 ENSMUSG00000088216 ENSMUST00000157591 Gm22080 snRNA Interval_167719 chr9 72268951 72269154 + 0 NA intron (ENSMUSG00000098340.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000098340.1, intron 1 of 1) 5804 ENSMUSG00000098340.1 ENSMUSG00000098340 ENSMUST00000183670 Gm27253 lincRNA Interval_101168 chr2 178735061 178735668 + 0 NA Intergenic Intergenic 274734 ENSMUSG00000039155.15 ENSMUSG00000039155 ENSMUST00000176869 Cdh26 protein_coding Interval_158967 chr8 88291050 88291262 + 0 NA intron (ENSMUSG00000031659.13, intron 1 of 27) protein_coding-intron (ENSMUSG00000031659.13, intron 1 of 27) -9223 ENSMUSG00000031659.13 ENSMUSG00000031659 ENSMUST00000210688 Adcy7 protein_coding Interval_51019 chr14 21621489 21621687 + 0 NA promoter-TSS (ENSMUSG00000021767.19) protein_coding-promoter-TSS (ENSMUSG00000021767.19) 81514 ENSMUSG00000063821.6 ENSMUSG00000063821 ENSMUST00000224735 Dupd1 protein_coding Interval_93814 chr2 77168162 77168427 + 0 NA intron (ENSMUSG00000044033.16, intron 2 of 3) protein_coding-intron (ENSMUSG00000044033.16, intron 2 of 11) 31133 ENSMUSG00000042272.17 ENSMUSG00000042272 ENSMUST00000139021 Sestd1 protein_coding Interval_16239 chr10 61627230 61627938 + 0 NA exon (ENSMUSG00000020090.7, exon 4 of 4) protein_coding-exon (ENSMUSG00000020090.7, exon 4 of 4) -16510 ENSMUSG00000101792.1 ENSMUSG00000101792 ENSMUST00000186283 Gm28447 processed_transcript Interval_39896 chr12 99431125 99431848 + 0 NA intron (ENSMUSG00000033713.12, intron 3 of 3) protein_coding-intron (ENSMUSG00000033713.12, intron 1 of 5) -54238 ENSMUSG00000113610.1 ENSMUSG00000113610 ENSMUST00000223488 Gm47132 TEC Interval_90761 chr2 32361107 32364293 + 0 NA promoter-TSS (ENSMUSG00000039205.16) protein_coding-promoter-TSS (ENSMUSG00000039205.16) -653 ENSMUSG00000039205.16 ENSMUSG00000039205 ENSMUST00000125818 Ciz1 protein_coding Interval_163925 chr9 28588612 28589340 + 0 NA intron (ENSMUSG00000062257.13, intron 1 of 2) protein_coding-intron (ENSMUSG00000062257.13, intron 1 of 6) 296228 ENSMUSG00000106021.1 ENSMUSG00000106021 ENSMUST00000199274 Gm44316 miRNA Interval_4096 chr1 68150519 68150865 + 0 NA intron (ENSMUSG00000062209.15, intron 20 of 26) protein_coding-intron (ENSMUSG00000062209.15, intron 20 of 27) -34145 ENSMUSG00000102449.1 ENSMUSG00000102449 ENSMUST00000193344 Gm37100 TEC Interval_25804 chr11 51819913 51821097 + 0 NA intron (ENSMUSG00000020387.15, intron 11 of 12) protein_coding-intron (ENSMUSG00000020387.15, intron 10 of 11) 36620 ENSMUSG00000020387.15 ENSMUSG00000020387 ENSMUST00000151277 Jade2 protein_coding Interval_4546 chr1 74926610 74927138 + 0 NA intron (ENSMUSG00000047021.14, intron 7 of 10) protein_coding-intron (ENSMUSG00000047021.14, intron 8 of 32) 8720 ENSMUSG00000047021.14 ENSMUSG00000047021 ENSMUST00000130489 Cfap65 protein_coding Interval_144741 chr7 27949022 27949569 + 0 NA exon (ENSMUSG00000074243.4, exon 1 of 1) processed_pseudogene-exon (ENSMUSG00000074243.4, exon 1 of 1) 468 ENSMUSG00000074243.4 ENSMUSG00000074243 ENSMUST00000118212 Gm10651 processed_pseudogene Interval_131593 chr5 138473417 138474996 + 0 NA Intergenic Intergenic -30607 ENSMUSG00000046440.9 ENSMUSG00000046440 ENSMUST00000034916 Gm5564 processed_pseudogene Interval_70789 chr17 14526890 14527082 + 0 NA Intergenic Intergenic 77415 ENSMUSG00000116801.1 ENSMUSG00000116801 ENSMUST00000232609 Gm38551 lincRNA Interval_127477 chr5 104331120 104331875 + 0 NA intron (ENSMUSG00000053863.3, intron 2 of 2) protein_coding-intron (ENSMUSG00000053863.3, intron 2 of 2) 6168 ENSMUSG00000053863.3 ENSMUSG00000053863 ENSMUST00000066207 Mepe protein_coding Interval_148646 chr7 83802534 83802862 + 0 NA intron (ENSMUSG00000109248.1, intron 1 of 3) lincRNA-intron (ENSMUSG00000109248.1, intron 1 of 3) -12009 ENSMUSG00000109450.1 ENSMUSG00000109450 ENSMUST00000207602 Gm39043 lincRNA Interval_25955 chr11 53110105 53110337 + 0 NA intron (ENSMUSG00000036264.9, intron 6 of 15) protein_coding-intron (ENSMUSG00000036264.9, intron 6 of 15) 9835 ENSMUSG00000087668.1 ENSMUSG00000087668 ENSMUST00000137096 Gm11186 antisense Interval_42953 chr13 21896479 21897653 + 0 NA promoter-TSS (ENSMUSG00000088148.1) miRNA-promoter-TSS (ENSMUSG00000088148.1) -17 ENSMUSG00000088148.1 ENSMUSG00000088148 ENSMUST00000157523 Mir1983 miRNA Interval_94526 chr2 91944086 91945511 + 0 NA promoter-TSS (ENSMUSG00000095332.2) antisense-promoter-TSS (ENSMUSG00000095332.2) 132 ENSMUSG00000098651.1 ENSMUSG00000098651 ENSMUST00000183498 Mir6999 miRNA Interval_31379 chr11 100344387 100345324 + 0 NA Intergenic Intergenic 6034 ENSMUSG00000092509.1 ENSMUSG00000092509 ENSMUST00000173304 Gm20394 processed_transcript Interval_53176 chr14 54924652 54927180 + 0 NA promoter-TSS (ENSMUSG00000022203.7) protein_coding-promoter-TSS (ENSMUSG00000022203.7) -261 ENSMUSG00000022203.7 ENSMUSG00000022203 ENSMUST00000227587 Efs protein_coding Interval_127813 chr5 107996132 107996415 + 0 NA Intergenic Intergenic -5987 ENSMUSG00000084855.2 ENSMUSG00000084855 ENSMUST00000117916 Gm9850 processed_pseudogene Interval_150720 chr7 113773439 113774841 + 0 NA intron (ENSMUSG00000038156.16, intron 1 of 5) protein_coding-intron (ENSMUSG00000038156.16, intron 1 of 15) 7966 ENSMUSG00000038156.16 ENSMUSG00000038156 ENSMUST00000084696 Spon1 protein_coding Interval_69101 chr16 90662543 90662776 + 0 NA Intergenic Intergenic -5668 ENSMUSG00000116591.1 ENSMUSG00000116591 ENSMUST00000231764 Gm49715 lincRNA Interval_99799 chr2 164970684 164971371 + 0 NA intron (ENSMUSG00000017740.17, intron 1 of 3) protein_coding-intron (ENSMUSG00000017740.17, intron 1 of 25) 2786 ENSMUSG00000017740.17 ENSMUSG00000017740 ENSMUST00000137302 Slc12a5 protein_coding Interval_166283 chr9 58011123 58011573 + 0 NA intron (ENSMUSG00000032323.13, intron 1 of 3) protein_coding-intron (ENSMUSG00000032323.13, intron 1 of 3) -3649 ENSMUSG00000032323.13 ENSMUSG00000032323 ENSMUST00000188539 Cyp11a1 protein_coding Interval_57354 chr15 9451913 9453566 + 0 NA intron (ENSMUSG00000039676.4, intron 1 of 3) protein_coding-intron (ENSMUSG00000039676.4, intron 1 of 4) 16711 ENSMUSG00000039676.4 ENSMUSG00000039676 ENSMUST00000226688 Capsl protein_coding Interval_57479 chr15 11630384 11631597 + 0 NA promoter-TSS (ENSMUSG00000115076.1) lincRNA-promoter-TSS (ENSMUSG00000115076.1) -244 ENSMUSG00000115076.1 ENSMUSG00000115076 ENSMUST00000228923 Gm49106 lincRNA Interval_130439 chr5 127631652 127633625 + 0 NA intron (ENSMUSG00000049971.17, intron 1 of 10) protein_coding-intron (ENSMUSG00000049971.17, intron 1 of 11) 376 ENSMUSG00000049971.17 ENSMUSG00000049971 ENSMUST00000134529 Glt1d1 protein_coding Interval_3568 chr1 59638001 59639637 + 0 NA TTS (ENSMUSG00000026021.15) protein_coding-TTS (ENSMUSG00000026021.15) 9252 ENSMUSG00000103821.1 ENSMUSG00000103821 ENSMUST00000192922 D430013B06Rik TEC Interval_136102 chr6 50962435 50962807 + 0 NA Intergenic Intergenic -4647 ENSMUSG00000108153.1 ENSMUSG00000108153 ENSMUST00000203677 Gm44402 processed_pseudogene Interval_92751 chr2 65121397 65121658 + 0 NA intron (ENSMUSG00000034903.18, intron 7 of 14) protein_coding-intron (ENSMUSG00000034903.18, intron 6 of 12) -117229 ENSMUSG00000086881.1 ENSMUSG00000086881 ENSMUST00000137582 Gm13594 antisense Interval_102647 chr3 28855356 28855715 + 0 NA Intergenic Intergenic -1278 ENSMUSG00000104275.1 ENSMUSG00000104275 ENSMUST00000192066 Gm37867 lincRNA Interval_83422 chr18 85155015 85156275 + 0 NA Intergenic Intergenic 83809 ENSMUSG00000118198.1 ENSMUSG00000118198 ENSMUST00000237500 Gm50370 lincRNA Interval_75547 chr17 67945029 67945945 + 0 NA intron (ENSMUSG00000024043.13, intron 1 of 17) protein_coding-intron (ENSMUSG00000024043.13, intron 1 of 17) -72439 ENSMUSG00000024043.13 ENSMUSG00000024043 ENSMUST00000170581 Arhgap28 protein_coding Interval_9240 chr1 155405509 155406127 + 0 NA intron (ENSMUSG00000026469.14, intron 1 of 6) protein_coding-intron (ENSMUSG00000026469.14, intron 1 of 14) 89852 ENSMUSG00000093286.1 ENSMUSG00000093286 ENSMUST00000175545 Gm22569 miRNA Interval_171877 chr9 121947861 121948226 + 0 NA intron (ENSMUSG00000111053.1, intron 3 of 3) processed_transcript-intron (ENSMUSG00000111053.1, intron 3 of 3) -2992 ENSMUSG00000038233.10 ENSMUSG00000038233 ENSMUST00000213773 Gask1a protein_coding Interval_169833 chr9 102342357 102342699 + 0 NA intron (ENSMUSG00000032537.15, intron 1 of 4) protein_coding-intron (ENSMUSG00000032537.15, intron 1 of 15) -30590 ENSMUSG00000088138.1 ENSMUSG00000088138 ENSMUST00000157513 Gm22894 snRNA Interval_109719 chr3 146277232 146277653 + 0 NA intron (ENSMUSG00000036832.5, intron 2 of 2) protein_coding-intron (ENSMUSG00000036832.5, intron 2 of 2) -46978 ENSMUSG00000105209.1 ENSMUSG00000105209 ENSMUST00000197740 Gm43334 TEC Interval_70723 chr17 13881423 13881734 + 0 NA promoter-TSS (ENSMUSG00000068036.16) protein_coding-promoter-TSS (ENSMUSG00000068036.16) 13962 ENSMUSG00000068036.16 ENSMUSG00000068036 ENSMUST00000124922 Afdn protein_coding Interval_30025 chr11 88758060 88759118 + 0 NA Intergenic Intergenic -15220 ENSMUSG00000085646.1 ENSMUSG00000085646 ENSMUST00000134567 Gm11493 lincRNA Interval_12305 chr1 191551947 191552171 + 0 NA exon (ENSMUSG00000037474.13, exon 11 of 11) protein_coding-exon (ENSMUSG00000037474.13, exon 11 of 11) -15167 ENSMUSG00000102246.1 ENSMUSG00000102246 ENSMUST00000192556 9430037O13Rik TEC Interval_141208 chr6 125608966 125609256 + 0 NA intron (ENSMUSG00000001930.17, intron 3 of 14) protein_coding-intron (ENSMUSG00000001930.17, intron 16 of 51) 56148 ENSMUSG00000001930.17 ENSMUSG00000001930 ENSMUST00000146264 Vwf protein_coding Interval_84123 chr19 7340939 7342276 + 0 NA promoter-TSS (ENSMUSG00000024969.15) protein_coding-promoter-TSS (ENSMUSG00000024969.15) -415 ENSMUSG00000024969.15 ENSMUSG00000024969 ENSMUST00000168324 Mark2 protein_coding Interval_38756 chr12 81940995 81941785 + 0 NA intron (ENSMUSG00000021140.9, intron 8 of 35) protein_coding-intron (ENSMUSG00000021140.9, intron 8 of 35) -31797 ENSMUSG00000021140.9 ENSMUSG00000021140 ENSMUST00000222468 Pcnx protein_coding Interval_96765 chr2 127904862 127905271 + 0 NA intron (ENSMUSG00000027380.10, intron 8 of 17) protein_coding-intron (ENSMUSG00000027380.10, intron 8 of 17) 13078 ENSMUSG00000093203.1 ENSMUSG00000093203 ENSMUST00000175462 Gm22411 miRNA Interval_18526 chr10 86950955 86952045 + 0 NA intron (ENSMUSG00000035459.18, intron 15 of 68) protein_coding-intron (ENSMUSG00000035459.18, intron 15 of 68) -20716 ENSMUSG00000089656.1 ENSMUSG00000089656 ENSMUST00000162837 Gm16271 antisense Interval_32262 chr11 106581932 106582397 + 0 NA intron (ENSMUSG00000040548.16, intron 1 of 1) protein_coding-intron (ENSMUSG00000040548.16, intron 1 of 11) -15054 ENSMUSG00000040548.16 ENSMUSG00000040548 ENSMUST00000153870 Tex2 protein_coding Interval_146665 chr7 49283491 49284853 + 0 NA intron (ENSMUSG00000052512.17, intron 1 of 10) protein_coding-intron (ENSMUSG00000052512.17, intron 1 of 37) -59302 ENSMUSG00000052512.17 ENSMUSG00000052512 ENSMUST00000183715 Nav2 protein_coding Interval_174086 chrX 134584731 134586325 + 0 NA promoter-TSS (ENSMUSG00000079435.9) protein_coding-promoter-TSS (ENSMUSG00000079435.9) -161 ENSMUSG00000079435.9 ENSMUSG00000079435 ENSMUST00000152266 Rpl36a protein_coding Interval_141479 chr6 128509035 128509344 + 0 NA intron (ENSMUSG00000030359.14, intron 13 of 35) protein_coding-intron (ENSMUSG00000030359.14, intron 13 of 35) 20536 ENSMUSG00000107764.1 ENSMUSG00000107764 ENSMUST00000205249 Gm5318 processed_pseudogene Interval_147628 chr7 70337408 70338420 + 0 NA promoter-TSS (ENSMUSG00000109097.1) lincRNA-promoter-TSS (ENSMUSG00000109097.1) -71 ENSMUSG00000109097.1 ENSMUSG00000109097 ENSMUST00000207682 Gm29683 lincRNA Interval_169133 chr9 93463986 93464249 + 0 NA Intergenic Intergenic -71747 ENSMUSG00000098171.1 ENSMUSG00000098171 ENSMUST00000183322 Gm9621 processed_pseudogene Interval_70824 chr17 15137694 15137986 + 0 NA Intergenic Intergenic -14319 ENSMUSG00000116655.1 ENSMUSG00000116655 ENSMUST00000231330 Gm35455 lincRNA Interval_31916 chr11 103833173 103833393 + 0 NA intron (ENSMUSG00000034187.18, intron 17 of 20) protein_coding-intron (ENSMUSG00000034187.18, intron 17 of 20) 39039 ENSMUSG00000034187.18 ENSMUSG00000034187 ENSMUST00000149642 Nsf protein_coding Interval_19822 chr10 109714122 109714897 + 0 NA intron (ENSMUSG00000020181.18, intron 30 of 40) protein_coding-intron (ENSMUSG00000020181.18, intron 28 of 38) 65730 ENSMUSG00000112260.1 ENSMUSG00000112260 ENSMUST00000219153 3110043J17Rik TEC Interval_115471 chr4 99215098 99215310 + 0 NA intron (ENSMUSG00000028550.15, intron 2 of 10) protein_coding-intron (ENSMUSG00000028550.15, intron 2 of 10) 21057 ENSMUSG00000028550.15 ENSMUSG00000028550 ENSMUST00000152121 Atg4c protein_coding Interval_172022 chr9 123589433 123589706 + 0 NA intron (ENSMUSG00000025240.10, intron 19 of 19) protein_coding-intron (ENSMUSG00000025240.10, intron 19 of 19) 38993 ENSMUSG00000025243.15 ENSMUSG00000025243 ENSMUST00000164241 Slc6a20b protein_coding Interval_104066 chr3 58081599 58082823 + 0 NA TTS (ENSMUSG00000105065.1) TEC-TTS (ENSMUSG00000105065.1) 2495 ENSMUSG00000105065.1 ENSMUSG00000105065 ENSMUST00000197831 Gm42513 TEC Interval_51162 chr14 24262805 24263361 + 0 NA Intergenic Intergenic 19448 ENSMUSG00000118622.1 ENSMUSG00000118622 ENSMUST00000239247 AC163638.3 unprocessed_pseudogene Interval_18212 chr10 83728339 83729858 + 0 NA intron (ENSMUSG00000087651.3, intron 1 of 1) protein_coding-intron (ENSMUSG00000087651.3, intron 1 of 5) -8811 ENSMUSG00000087651.3 ENSMUSG00000087651 ENSMUST00000218623 1500009L16Rik protein_coding Interval_108147 chr3 121952919 121954056 + 0 NA intron (ENSMUSG00000039831.16, intron 1 of 3) protein_coding-intron (ENSMUSG00000039831.16, intron 1 of 22) -49502 ENSMUSG00000039831.16 ENSMUSG00000039831 ENSMUST00000199550 Arhgap29 protein_coding Interval_41703 chr12 117875592 117876002 + 0 NA TTS (ENSMUSG00000021175.15) protein_coding-TTS (ENSMUSG00000021175.15) 31909 ENSMUSG00000021175.15 ENSMUSG00000021175 ENSMUST00000177339 Cdca7l protein_coding Interval_78477 chr18 13397082 13397912 + 0 NA Intergenic Intergenic 25408 ENSMUSG00000117367.1 ENSMUSG00000117367 ENSMUST00000235001 Gm50093 processed_pseudogene Interval_79502 chr18 32431576 32432708 + 0 NA intron (ENSMUSG00000024381.16, intron 12 of 13) protein_coding-intron (ENSMUSG00000024381.16, intron 17 of 18) -30437 ENSMUSG00000109232.1 ENSMUSG00000109232 ENSMUST00000207413 Gm44577 bidirectional_promoter_lncRNA Interval_163267 chr9 20436873 20437391 + 0 NA TTS (ENSMUSG00000063108.15) protein_coding-TTS (ENSMUSG00000063108.15) 20039 ENSMUSG00000111626.1 ENSMUSG00000111626 ENSMUST00000215252 Gm48738 processed_pseudogene Interval_137813 chr6 82713823 82715963 + 0 NA Intergenic Intergenic -9528 ENSMUSG00000030042.15 ENSMUSG00000030042 ENSMUST00000140281 Pole4 protein_coding Interval_2841 chr1 46230427 46230797 + 0 NA intron (ENSMUSG00000041144.12, intron 40 of 64) protein_coding-intron (ENSMUSG00000041144.12, intron 41 of 65) -143585 ENSMUSG00000096047.1 ENSMUSG00000096047 ENSMUST00000093689 n-R5s211 rRNA Interval_136567 chr6 55774808 55775100 + 0 NA Intergenic Intergenic 90383 ENSMUSG00000108063.1 ENSMUSG00000108063 ENSMUST00000203099 Gm3279 lincRNA Interval_4358 chr1 72963391 72963870 + 0 NA Intergenic Intergenic 52279 ENSMUSG00000026182.6 ENSMUSG00000026182 ENSMUST00000027374 Tnp1 protein_coding Interval_67121 chr16 43603535 43604228 + 0 NA intron (ENSMUSG00000022708.16, intron 3 of 3) protein_coding-intron (ENSMUSG00000022708.16, intron 7 of 8) -36774 ENSMUSG00000076372.2 ENSMUSG00000076372 ENSMUST00000102417 Mir568 miRNA Interval_126743 chr5 92469834 92470206 + 0 NA intron (ENSMUSG00000029426.8, intron 2 of 11) protein_coding-intron (ENSMUSG00000029426.8, intron 2 of 11) 11463 ENSMUSG00000099160.1 ENSMUSG00000099160 ENSMUST00000184064 Mir6415 miRNA Interval_33897 chr11 119252097 119253806 + 0 NA promoter-TSS (ENSMUSG00000039963.20) protein_coding-promoter-TSS (ENSMUSG00000039963.20) -21905 ENSMUSG00000025579.14 ENSMUSG00000025579 ENSMUST00000138510 Gaa protein_coding Interval_130354 chr5 126610025 126610460 + 0 NA Intergenic Intergenic -96261 ENSMUSG00000084551.1 ENSMUSG00000084551 ENSMUST00000122602 Gm24839 snRNA Interval_34821 chr12 12261473 12263590 + 0 NA intron (ENSMUSG00000020589.17, intron 1 of 3) protein_coding-intron (ENSMUSG00000020589.17, intron 1 of 11) 348 ENSMUSG00000020589.17 ENSMUSG00000020589 ENSMUST00000222357 Fam49a protein_coding Interval_100239 chr2 167853266 167853495 + 0 NA Intergenic Intergenic -5205 ENSMUSG00000085411.1 ENSMUSG00000085411 ENSMUST00000142937 Gm14319 lincRNA Interval_50781 chr14 19810701 19812217 + 0 NA exon (ENSMUSG00000021806.4, exon 21 of 21) protein_coding-exon (ENSMUSG00000021806.4, exon 21 of 21) 11596 ENSMUSG00000021807.6 ENSMUSG00000021807 ENSMUST00000225615 Rtraf protein_coding Interval_173694 chrX 102031782 102032025 + 0 NA intron (ENSMUSG00000079481.11, intron 1 of 1) protein_coding-intron (ENSMUSG00000079481.11, intron 1 of 7) -18751 ENSMUSG00000098968.1 ENSMUSG00000098968 ENSMUST00000184273 Gm27843 miRNA Interval_81043 chr18 53264123 53266213 + 0 NA intron (ENSMUSG00000024535.16, intron 1 of 3) protein_coding-intron (ENSMUSG00000024535.16, intron 1 of 7) 19440 ENSMUSG00000024535.16 ENSMUSG00000024535 ENSMUST00000025417 Snx24 protein_coding Interval_103021 chr3 34554557 34555876 + 0 NA intron (ENSMUSG00000105265.4, intron 3 of 3) processed_transcript-intron (ENSMUSG00000105265.4, intron 3 of 4) -5124 ENSMUSG00000098795.1 ENSMUSG00000098795 ENSMUST00000184662 Gm27403 misc_RNA Interval_107410 chr3 107368308 107369648 + 0 NA Intergenic Intergenic 26023 ENSMUSG00000105532.1 ENSMUSG00000105532 ENSMUST00000199575 Gm5279 processed_pseudogene Interval_11879 chr1 186698871 186699631 + 0 NA intron (ENSMUSG00000039239.14, intron 1 of 7) protein_coding-intron (ENSMUSG00000039239.14, intron 1 of 6) -6444 ENSMUSG00000100393.1 ENSMUSG00000100393 ENSMUST00000189481 Gm29491 antisense Interval_56918 chr14 123301353 123302055 + 0 NA intron (ENSMUSG00000000197.8, intron 28 of 29) protein_coding-intron (ENSMUSG00000000197.8, intron 30 of 43) 87666 ENSMUSG00000115674.1 ENSMUSG00000115674 ENSMUST00000227636 Gm49297 TEC Interval_70885 chr17 15623034 15623389 + 0 NA Intergenic Intergenic -8577 ENSMUSG00000116924.1 ENSMUSG00000116924 ENSMUST00000231822 4933401D09Rik lincRNA Interval_45367 chr13 54676298 54676505 + 0 NA Intergenic Intergenic 11407 ENSMUSG00000034928.16 ENSMUSG00000034928 ENSMUST00000150626 Rnf44 protein_coding Interval_63032 chr15 98742300 98743869 + 0 NA intron (ENSMUSG00000051853.10, intron 1 of 4) protein_coding-intron (ENSMUSG00000051853.10, intron 1 of 4) -14932 ENSMUSG00000003355.7 ENSMUSG00000003355 ENSMUST00000229562 Fkbp11 protein_coding Interval_16825 chr10 68654546 68654886 + 0 NA Intergenic Intergenic 37657 ENSMUSG00000112434.1 ENSMUSG00000112434 ENSMUST00000218595 Gm7594 processed_pseudogene Interval_123388 chr5 32115346 32115656 + 0 NA Intergenic Intergenic 17670 ENSMUSG00000102759.1 ENSMUSG00000102759 ENSMUST00000195772 Gm10463 TEC Interval_57631 chr15 12940292 12940510 + 0 NA Intergenic Intergenic -15321 ENSMUSG00000115807.1 ENSMUSG00000115807 ENSMUST00000226269 Gm49100 unprocessed_pseudogene Interval_60434 chr15 73723576 73725290 + 0 NA promoter-TSS (ENSMUSG00000059895.13) protein_coding-promoter-TSS (ENSMUSG00000059895.13) -4731 ENSMUSG00000084493.1 ENSMUSG00000084493 ENSMUST00000122544 Gm22106 snRNA Interval_30481 chr11 94639873 94640059 + 0 NA intron (ENSMUSG00000020869.8, intron 5 of 6) protein_coding-intron (ENSMUSG00000020869.8, intron 5 of 6) 10152 ENSMUSG00000020869.8 ENSMUSG00000020869 ENSMUST00000138782 Lrrc59 protein_coding Interval_55606 chr14 95508925 95509145 + 0 NA Intergenic Intergenic 89249 ENSMUSG00000115243.1 ENSMUSG00000115243 ENSMUST00000228617 Gm5207 processed_pseudogene Interval_16805 chr10 68259089 68259872 + 0 NA intron (ENSMUSG00000019947.10, intron 2 of 9) protein_coding-intron (ENSMUSG00000019947.10, intron 2 of 10) 19260 ENSMUSG00000019947.10 ENSMUSG00000019947 ENSMUST00000218425 Arid5b protein_coding Interval_153069 chr7 141164396 141164617 + 0 NA exon (ENSMUSG00000038650.15, exon 3 of 10) protein_coding-exon (ENSMUSG00000038650.15, exon 3 of 10) 3685 ENSMUSG00000038650.15 ENSMUSG00000038650 ENSMUST00000210979 Rnh1 protein_coding Interval_53263 chr14 55671287 55672642 + 0 NA promoter-TSS (ENSMUSG00000002326.6) protein_coding-promoter-TSS (ENSMUSG00000002326.6) -87 ENSMUSG00000010376.15 ENSMUSG00000010376 ENSMUST00000227157 Nedd8 protein_coding Interval_69704 chr16 95686021 95687054 + 0 NA Intergenic Intergenic -15918 ENSMUSG00000022895.16 ENSMUSG00000022895 ENSMUST00000233578 Ets2 protein_coding Interval_69814 chr16 96852347 96852835 + 0 NA intron (ENSMUSG00000050272.10, intron 3 of 32) protein_coding-intron (ENSMUSG00000050272.10, intron 3 of 32) -66141 ENSMUSG00000117324.1 ENSMUSG00000117324 ENSMUST00000232718 Gm32432 antisense Interval_98822 chr2 155320792 155321134 + 0 NA intron (ENSMUSG00000038383.16, intron 6 of 11) protein_coding-intron (ENSMUSG00000038383.16, intron 6 of 11) -35854 ENSMUSG00000076216.1 ENSMUSG00000076216 ENSMUST00000102261 Mir695 miRNA Interval_111267 chr4 16224414 16225300 + 0 NA intron (ENSMUSG00000085112.1, intron 3 of 6) processed_transcript-intron (ENSMUSG00000085112.1, intron 3 of 6) -21412 ENSMUSG00000083725.1 ENSMUSG00000083725 ENSMUST00000118093 Gm11865 processed_pseudogene Interval_154904 chr8 24962713 24962990 + 0 NA intron (ENSMUSG00000031555.15, intron 20 of 21) protein_coding-intron (ENSMUSG00000031555.15, intron 21 of 22) -14070 ENSMUSG00000037437.18 ENSMUSG00000037437 ENSMUST00000133088 Adam32 protein_coding Interval_12920 chr10 8153516 8154390 + 0 NA Intergenic Intergenic -22178 ENSMUSG00000112109.1 ENSMUSG00000112109 ENSMUST00000219578 Gm30906 lincRNA Interval_12735 chr10 4593580 4594375 + 0 NA Intergenic Intergenic -17616 ENSMUSG00000019768.16 ENSMUSG00000019768 ENSMUST00000137012 Esr1 protein_coding Interval_92595 chr2 61087556 61088500 + 0 NA Intergenic Intergenic -57058 ENSMUSG00000083334.1 ENSMUSG00000083334 ENSMUST00000118519 Gm13579 processed_pseudogene Interval_67445 chr16 48687031 48687835 + 0 NA Intergenic Intergenic 63015 ENSMUSG00000116640.1 ENSMUSG00000116640 ENSMUST00000231404 Gm8670 processed_pseudogene Interval_104681 chr3 69367072 69368379 + 0 NA intron (ENSMUSG00000027784.10, intron 1 of 3) protein_coding-intron (ENSMUSG00000027784.10, intron 1 of 3) -31965 ENSMUSG00000090941.1 ENSMUSG00000090941 ENSMUST00000166666 Gm17212 processed_pseudogene Interval_158545 chr8 84371087 84372154 + 0 NA intron (ENSMUSG00000034656.18, intron 2 of 48) protein_coding-intron (ENSMUSG00000034656.18, intron 2 of 48) 8961 ENSMUSG00000064392.1 ENSMUSG00000064392 ENSMUST00000082458 Gm23626 snoRNA Interval_154811 chr8 23596243 23596990 + 0 NA Intergenic Intergenic -73045 ENSMUSG00000037492.16 ENSMUSG00000037492 ENSMUST00000146774 Zmat4 protein_coding Interval_159775 chr8 102783809 102785637 + 0 NA intron (ENSMUSG00000031673.6, intron 1 of 6) protein_coding-intron (ENSMUSG00000031673.6, intron 1 of 12) -3681 ENSMUSG00000110269.1 ENSMUSG00000110269 ENSMUST00000210042 Gm45258 TEC Interval_153459 chr7 144937321 144937916 + 0 NA intron (ENSMUSG00000070348.5, intron 2 of 3) protein_coding-intron (ENSMUSG00000070348.5, intron 2 of 4) 2307 ENSMUSG00000070348.5 ENSMUSG00000070348 ENSMUST00000135985 Ccnd1 protein_coding Interval_21167 chr10 127016393 127016749 + 0 NA intron (ENSMUSG00000025432.11, intron 16 of 18) protein_coding-intron (ENSMUSG00000025432.11, intron 17 of 19) 14232 ENSMUSG00000040521.11 ENSMUSG00000040521 ENSMUST00000134917 Tsfm protein_coding Interval_20202 chr10 115802993 115803296 + 0 NA intron (ENSMUSG00000112513.1, intron 4 of 4) antisense-intron (ENSMUSG00000112513.1, intron 4 of 4) -13688 ENSMUSG00000034127.15 ENSMUSG00000034127 ENSMUST00000035563 Tspan8 protein_coding Interval_59810 chr15 59481317 59482328 + 0 NA intron (ENSMUSG00000059586.10, intron 4 of 6) protein_coding-intron (ENSMUSG00000059586.10, intron 4 of 6) 107537 ENSMUSG00000059586.10 ENSMUSG00000059586 ENSMUST00000079703 Nsmce2 protein_coding Interval_113150 chr4 48633777 48634648 + 0 NA intron (ENSMUSG00000028347.14, intron 5 of 9) protein_coding-intron (ENSMUSG00000028347.14, intron 5 of 9) -2722 ENSMUSG00000028347.14 ENSMUSG00000028347 ENSMUST00000141720 Tmeff1 protein_coding Interval_118254 chr4 129841339 129841618 + 0 NA intron (ENSMUSG00000028788.14, intron 2 of 5) protein_coding-intron (ENSMUSG00000028788.14, intron 2 of 5) -13593 ENSMUSG00000073753.4 ENSMUSG00000073753 ENSMUST00000097869 Gm10571 pseudogene Interval_5387 chr1 88387326 88387514 + 0 NA intron (ENSMUSG00000036251.16, intron 24 of 24) protein_coding-intron (ENSMUSG00000036251.16, intron 25 of 25) -19986 ENSMUSG00000026295.12 ENSMUSG00000026295 ENSMUST00000189225 Spp2 protein_coding Interval_26984 chr11 62127447 62128605 + 0 NA intron (ENSMUSG00000042331.13, intron 4 of 14) protein_coding-intron (ENSMUSG00000042331.13, intron 4 of 7) 10607 ENSMUSG00000118644.1 ENSMUSG00000118644 ENSMUST00000239393 AL592080.1 unprocessed_pseudogene Interval_119525 chr4 138132899 138133101 + 0 NA intron (ENSMUSG00000028760.16, intron 11 of 33) protein_coding-intron (ENSMUSG00000028760.16, intron 12 of 34) 5518 ENSMUSG00000084804.1 ENSMUSG00000084804 ENSMUST00000124620 1700095J12Rik antisense Interval_50829 chr14 20093311 20093899 + 0 NA intron (ENSMUSG00000045107.5, intron 1 of 1) protein_coding-intron (ENSMUSG00000045107.5, intron 1 of 1) -35308 ENSMUSG00000114498.1 ENSMUSG00000114498 ENSMUST00000224881 Gm48339 processed_pseudogene Interval_21336 chr10 128051128 128051617 + 0 NA Intergenic Intergenic 15737 ENSMUSG00000061315.14 ENSMUSG00000061315 ENSMUST00000092048 Naca protein_coding Interval_96241 chr2 120882704 120883306 + 0 NA intron (ENSMUSG00000027272.5, intron 1 of 5) protein_coding-intron (ENSMUSG00000027272.5, intron 37 of 46) 16677 ENSMUSG00000087519.8 ENSMUSG00000087519 ENSMUST00000171483 AV039307 processed_transcript Interval_52887 chr14 51858635 51858814 + 0 NA Intergenic Intergenic 5025 ENSMUSG00000062148.6 ENSMUSG00000062148 ENSMUST00000074477 Ear6 protein_coding Interval_84574 chr19 12904455 12905131 + 0 NA promoter-TSS (ENSMUSG00000112693.1) transcribed_unprocessed_pseudogene-promoter-TSS (ENSMUSG00000112693.1) -527 ENSMUSG00000112693.1 ENSMUSG00000112693 ENSMUST00000218013 Gm5512 transcribed_unprocessed_pseudogene Interval_13642 chr10 20361604 20362681 + 0 NA TTS (ENSMUSG00000019992.8) protein_coding-TTS (ENSMUSG00000019992.8) 3295 ENSMUSG00000111351.1 ENSMUSG00000111351 ENSMUST00000213596 Gm48537 processed_pseudogene Interval_57382 chr15 10440944 10441616 + 0 NA Intergenic Intergenic 10630 ENSMUSG00000044224.16 ENSMUSG00000044224 ENSMUST00000147224 Dnajc21 protein_coding Interval_49920 chr13 118265725 118266619 + 0 NA Intergenic Intergenic -120458 ENSMUSG00000097411.2 ENSMUSG00000097411 ENSMUST00000181168 B430218F22Rik antisense Interval_99754 chr2 164715995 164716916 + 0 NA intron (ENSMUSG00000074593.11, intron 2 of 3) protein_coding-intron (ENSMUSG00000074593.11, intron 2 of 3) 1150 ENSMUSG00000074593.11 ENSMUSG00000074593 ENSMUST00000180193 Spint5 protein_coding Interval_33772 chr11 118409949 118410679 + 0 NA intron (ENSMUSG00000025575.14, intron 3 of 5) protein_coding-intron (ENSMUSG00000025575.14, intron 2 of 3) 5480 ENSMUSG00000025575.14 ENSMUSG00000025575 ENSMUST00000106287 Cant1 protein_coding Interval_22017 chr11 5801276 5804601 + 0 NA intron (ENSMUSG00000020475.3, intron 2 of 2) protein_coding-intron (ENSMUSG00000020475.3, intron 2 of 2) 795 ENSMUSG00000020475.3 ENSMUSG00000020475 ENSMUST00000020768 Pgam2 protein_coding Interval_71574 chr17 24636922 24637633 + 0 NA promoter-TSS (ENSMUSG00000041429.3) protein_coding-promoter-TSS (ENSMUSG00000041429.3) -899 ENSMUSG00000041429.3 ENSMUSG00000041429 ENSMUST00000234888 Nthl1 protein_coding Interval_145218 chr7 30749717 30751433 + 0 NA promoter-TSS (ENSMUSG00000046056.15) protein_coding-promoter-TSS (ENSMUSG00000046056.15) -987 ENSMUSG00000046056.15 ENSMUSG00000046056 ENSMUST00000182577 Sbsn protein_coding Interval_165352 chr9 46516232 46517476 + 0 NA Intergenic Intergenic -11781 ENSMUSG00000111115.1 ENSMUSG00000111115 ENSMUST00000214085 Gm47144 lincRNA Interval_71021 chr17 17241120 17242816 + 0 NA intron (ENSMUSG00000116802.1, intron 1 of 3) lincRNA-intron (ENSMUSG00000116802.1, intron 1 of 3) -20382 ENSMUSG00000116802.1 ENSMUSG00000116802 ENSMUST00000231376 Gm5165 lincRNA Interval_41411 chr12 113513029 113513259 + 0 NA Intergenic Intergenic 12185 ENSMUSG00000093818.1 ENSMUSG00000093818 ENSMUST00000180266 Ighd3-1 IG_D_gene Interval_163184 chr9 17438670 17439267 + 0 NA Intergenic Intergenic 63741 ENSMUSG00000111405.1 ENSMUSG00000111405 ENSMUST00000214774 Gm2594 processed_pseudogene Interval_77229 chr17 87481646 87481878 + 0 NA Intergenic Intergenic -8020 ENSMUSG00000117486.1 ENSMUSG00000117486 ENSMUST00000234254 Gm30938 lincRNA Interval_115219 chr4 94534237 94534488 + 0 NA intron (ENSMUSG00000028578.8, intron 4 of 5) protein_coding-intron (ENSMUSG00000028578.8, intron 4 of 5) 22404 ENSMUSG00000028578.8 ENSMUSG00000028578 ENSMUST00000153294 Caap1 protein_coding Interval_90966 chr2 33783570 33783838 + 0 NA intron (ENSMUSG00000038740.9, intron 7 of 9) protein_coding-intron (ENSMUSG00000038740.9, intron 7 of 9) 5055 ENSMUSG00000038740.9 ENSMUSG00000038740 ENSMUST00000146892 Mvb12b protein_coding Interval_171810 chr9 121388676 121389933 + 0 NA intron (ENSMUSG00000032536.12, intron 1 of 3) protein_coding-intron (ENSMUSG00000032536.12, intron 1 of 15) 42748 ENSMUSG00000110738.1 ENSMUSG00000110738 ENSMUST00000214815 Gm47092 TEC Interval_30758 chr11 96302811 96305212 + 0 NA exon (ENSMUSG00000038700.4, exon 1 of 2) protein_coding-exon (ENSMUSG00000038700.4, exon 1 of 2) 675 ENSMUSG00000038700.4 ENSMUSG00000038700 ENSMUST00000049272 Hoxb5 protein_coding Interval_173117 chrX 72330485 72331066 + 0 NA Intergenic Intergenic -55972 ENSMUSG00000031340.8 ENSMUSG00000031340 ENSMUST00000153740 Gabre protein_coding Interval_66909 chr16 38471279 38472506 + 0 NA intron (ENSMUSG00000075122.5, intron 1 of 3) protein_coding-intron (ENSMUSG00000075122.5, intron 1 of 4) 12774 ENSMUSG00000075122.5 ENSMUSG00000075122 ENSMUST00000232409 Cd80 protein_coding Interval_5870 chr1 92840166 92841756 + 0 NA intron (ENSMUSG00000034220.7, intron 1 of 8) protein_coding-intron (ENSMUSG00000034220.7, intron 1 of 8) -3065 ENSMUSG00000100781.1 ENSMUSG00000100781 ENSMUST00000189080 Gm29481 antisense Interval_66888 chr16 38356938 38357431 + 0 NA intron (ENSMUSG00000095464.1, intron 2 of 2) protein_coding-intron (ENSMUSG00000095464.1, intron 2 of 2) 7892 ENSMUSG00000046516.10 ENSMUSG00000046516 ENSMUST00000156026 Cox17 protein_coding Interval_65926 chr16 30285485 30286289 + 0 NA Intergenic Intergenic -2631 ENSMUSG00000052316.9 ENSMUSG00000052316 ENSMUST00000064606 Lrrc15 protein_coding Interval_153406 chr7 144469600 144471011 + 0 NA promoter-TSS (ENSMUSG00000085228.1) sense_intronic-promoter-TSS (ENSMUSG00000085228.1) -312 ENSMUSG00000085228.1 ENSMUSG00000085228 ENSMUST00000145297 Gm14376 sense_intronic Interval_121962 chr5 12666976 12667231 + 0 NA Intergenic Intergenic 3625 ENSMUSG00000105237.1 ENSMUSG00000105237 ENSMUST00000197223 Gm42580 processed_pseudogene Interval_11515 chr1 182375976 182376572 + 0 NA Intergenic Intergenic 17261 ENSMUSG00000097260.1 ENSMUSG00000097260 ENSMUST00000181525 Gm5706 processed_pseudogene Interval_166267 chr9 57900676 57902570 + 0 NA Intergenic Intergenic -11011 ENSMUSG00000055720.10 ENSMUSG00000055720 ENSMUST00000215936 Ubl7 protein_coding Interval_107461 chr3 107866820 107867681 + 0 NA TTS (ENSMUSG00000105944.1) processed_pseudogene-TTS (ENSMUSG00000105944.1) 1393 ENSMUSG00000105944.1 ENSMUSG00000105944 ENSMUST00000196916 Gm5075 processed_pseudogene Interval_86709 chr19 42856980 42857770 + 0 NA intron (ENSMUSG00000074852.4, intron 9 of 11) protein_coding-intron (ENSMUSG00000074852.4, intron 9 of 11) 78265 ENSMUSG00000090235.1 ENSMUSG00000090235 ENSMUST00000160001 Gm16244 processed_transcript Interval_69206 chr16 91346183 91346716 + 0 NA Intergenic Intergenic 3335 ENSMUSG00000065811.1 ENSMUSG00000065811 ENSMUST00000083877 Gm24695 snRNA Interval_36683 chr12 51993785 51994040 + 0 NA intron (ENSMUSG00000020956.14, intron 3 of 3) protein_coding-intron (ENSMUSG00000020956.14, intron 3 of 3) -1124 ENSMUSG00000112064.1 ENSMUSG00000112064 ENSMUST00000218223 Gm47399 processed_pseudogene Interval_168931 chr9 89118226 89118757 + 0 NA intron (ENSMUSG00000074146.9, intron 24 of 24) lincRNA-intron (ENSMUSG00000074146.9, intron 24 of 24) -25801 ENSMUSG00000079162.8 ENSMUSG00000079162 ENSMUST00000189557 Trim43b protein_coding Interval_21800 chr11 4440817 4441719 + 0 NA promoter-TSS (ENSMUSG00000020419.11) protein_coding-promoter-TSS (ENSMUSG00000020419.11) -14006 ENSMUSG00000020419.11 ENSMUSG00000020419 ENSMUST00000124249 Hormad2 protein_coding Interval_114227 chr4 68953692 68954853 + 0 NA exon (ENSMUSG00000028351.5, exon 1 of 8) protein_coding-exon (ENSMUSG00000028351.5, exon 1 of 8) -112865 ENSMUSG00000028351.5 ENSMUSG00000028351 ENSMUST00000140572 Brinp1 protein_coding Interval_93826 chr2 77255141 77255527 + 0 NA TTS (ENSMUSG00000084087.1) processed_pseudogene-TTS (ENSMUSG00000084087.1) 1089 ENSMUSG00000084087.1 ENSMUSG00000084087 ENSMUST00000117729 Gm13650 processed_pseudogene Interval_107137 chr3 103814554 103815805 + 0 NA TTS (ENSMUSG00000032952.11) protein_coding-TTS (ENSMUSG00000032952.11) 5343 ENSMUSG00000032952.11 ENSMUSG00000032952 ENSMUST00000199686 Ap4b1 protein_coding Interval_111001 chr4 11128545 11129565 + 0 NA Intergenic Intergenic -4272 ENSMUSG00000083025.1 ENSMUSG00000083025 ENSMUST00000121003 Gm11829 processed_pseudogene Interval_16172 chr10 61211268 61213439 + 0 NA intron (ENSMUSG00000059901.12, intron 14 of 21) protein_coding-intron (ENSMUSG00000059901.12, intron 14 of 21) 37091 ENSMUSG00000020096.21 ENSMUSG00000020096 ENSMUST00000126831 Tbata protein_coding Interval_137285 chr6 71048239 71049234 + 0 NA Intergenic Intergenic -9003 ENSMUSG00000077369.1 ENSMUSG00000077369 ENSMUST00000104181 Gm23485 snRNA Interval_93764 chr2 76699147 76700234 + 0 NA Intergenic Intergenic 9837 ENSMUSG00000002733.8 ENSMUSG00000002733 ENSMUST00000125119 Plekha3 protein_coding Interval_21813 chr11 4497248 4498221 + 0 NA intron (ENSMUSG00000034354.17, intron 10 of 17) protein_coding-intron (ENSMUSG00000034354.17, intron 10 of 17) -9368 ENSMUSG00000034354.17 ENSMUSG00000034354 ENSMUST00000144242 Mtmr3 protein_coding Interval_150979 chr7 117279625 117280157 + 0 NA Intergenic Intergenic 50284 ENSMUSG00000108303.1 ENSMUSG00000108303 ENSMUST00000206031 Gm39075 lincRNA Interval_97435 chr2 136174292 136175053 + 0 NA intron (ENSMUSG00000039913.12, intron 2 of 9) protein_coding-intron (ENSMUSG00000039913.12, intron 3 of 10) 37666 ENSMUSG00000085383.1 ENSMUSG00000085383 ENSMUST00000137802 Gm14218 antisense Interval_26827 chr11 60890676 60890901 + 0 NA Intergenic Intergenic -11750 ENSMUSG00000043284.12 ENSMUSG00000043284 ENSMUST00000155031 Tmem11 protein_coding Interval_90285 chr2 29536860 29537748 + 0 NA Intergenic Intergenic 39092 ENSMUSG00000082413.1 ENSMUSG00000082413 ENSMUST00000117074 Gm13401 processed_pseudogene Interval_46269 chr13 63256688 63257139 + 0 NA intron (ENSMUSG00000021458.17, intron 2 of 3) protein_coding-intron (ENSMUSG00000021458.17, intron 12 of 15) -1349 ENSMUSG00000113665.1 ENSMUSG00000113665 ENSMUST00000221520 Gm47603 TEC Interval_172941 chrX 56821900 56822649 + 0 NA promoter-TSS (ENSMUSG00000067878.13) protein_coding-promoter-TSS (ENSMUSG00000067878.13) 40 ENSMUSG00000067878.13 ENSMUSG00000067878 ENSMUST00000135542 Map7d3 protein_coding Interval_138772 chr6 91740742 91741766 + 0 NA TTS (ENSMUSG00000030096.8) protein_coding-TTS (ENSMUSG00000030096.8) -8930 ENSMUSG00000030096.8 ENSMUSG00000030096 ENSMUST00000206988 Slc6a6 protein_coding Interval_30861 chr11 96934531 96935723 + 0 NA exon (ENSMUSG00000047040.9, exon 2 of 2) protein_coding-exon (ENSMUSG00000047040.9, exon 2 of 2) 7023 ENSMUSG00000047040.9 ENSMUSG00000047040 ENSMUST00000107633 Prr15l protein_coding Interval_50044 chr13 120169902 120170221 + 0 NA Intergenic Intergenic -2372 ENSMUSG00000095653.2 ENSMUSG00000095653 ENSMUST00000178828 Gm21818 protein_coding Interval_122668 chr5 24563062 24563929 + 0 NA Intergenic Intergenic -8085 ENSMUSG00000038199.12 ENSMUSG00000038199 ENSMUST00000198709 Iqca1l protein_coding Interval_86833 chr19 44237437 44238113 + 0 NA promoter-TSS (ENSMUSG00000025202.8) protein_coding-promoter-TSS (ENSMUSG00000025202.8) -40 ENSMUSG00000025202.8 ENSMUSG00000025202 ENSMUST00000237324 Scd3 protein_coding Interval_80505 chr18 43029936 43030132 + 0 NA intron (ENSMUSG00000117792.1, intron 2 of 3) protein_coding-intron (ENSMUSG00000024500.20, intron 1 of 8) 40372 ENSMUSG00000094137.1 ENSMUSG00000094137 ENSMUST00000178200 Gm22264 snRNA Interval_129123 chr5 117537070 117537309 + 0 NA intron (ENSMUSG00000061578.8, intron 3 of 20) protein_coding-intron (ENSMUSG00000061578.8, intron 3 of 3) 16490 ENSMUSG00000107199.1 ENSMUSG00000107199 ENSMUST00000201553 Gm42550 TEC Interval_153567 chr8 3458849 3459207 + 0 NA exon (ENSMUSG00000069633.12, exon 5 of 5) protein_coding-exon (ENSMUSG00000069633.12, exon 5 of 5) 989 ENSMUSG00000108955.1 ENSMUSG00000108955 ENSMUST00000207266 Gm44775 TEC Interval_142823 chr6 146219587 146220125 + 0 NA intron (ENSMUSG00000030287.15, intron 1 of 4) protein_coding-intron (ENSMUSG00000030287.15, intron 45 of 56) 12623 ENSMUSG00000030287.15 ENSMUSG00000030287 ENSMUST00000111673 Itpr2 protein_coding Interval_84953 chr19 19977719 19978055 + 0 NA Intergenic Intergenic 55748 ENSMUSG00000064783.1 ENSMUSG00000064783 ENSMUST00000082849 Gm22684 snoRNA Interval_62377 chr15 91319360 91320072 + 0 NA intron (ENSMUSG00000036298.10, intron 7 of 9) protein_coding-intron (ENSMUSG00000036298.10, intron 7 of 9) 92501 ENSMUSG00000036298.10 ENSMUSG00000036298 ENSMUST00000109282 Slc2a13 protein_coding Interval_162046 chr8 124705295 124706360 + 0 NA intron (ENSMUSG00000037300.19, intron 1 of 2) protein_coding-intron (ENSMUSG00000037300.19, intron 4 of 17) 16141 ENSMUSG00000037300.19 ENSMUSG00000037300 ENSMUST00000127167 Ttc13 protein_coding Interval_22170 chr11 6773040 6774275 + 0 NA Intergenic Intergenic 9481 ENSMUSG00000083819.1 ENSMUSG00000083819 ENSMUST00000118511 Gm11977 processed_pseudogene Interval_57668 chr15 14403839 14404053 + 0 NA Intergenic Intergenic -55430 ENSMUSG00000115782.1 ENSMUSG00000115782 ENSMUST00000227703 Gm49116 lincRNA Interval_44558 chr13 46019346 46020189 + 0 NA Intergenic Intergenic -40830 ENSMUSG00000113860.1 ENSMUSG00000113860 ENSMUST00000222657 Gm45949 lincRNA Interval_15372 chr10 45157770 45158329 + 0 NA intron (ENSMUSG00000019849.11, intron 14 of 14) protein_coding-intron (ENSMUSG00000019849.11, intron 14 of 14) -20049 ENSMUSG00000019848.14 ENSMUSG00000019848 ENSMUST00000161803 Popdc3 protein_coding Interval_124084 chr5 38178162 38178368 + 0 NA Intergenic Intergenic -18792 ENSMUSG00000029126.7 ENSMUSG00000029126 ENSMUST00000201134 Nsg1 protein_coding Interval_20558 chr10 118988508 118990056 + 0 NA Intergenic Intergenic 32388 ENSMUSG00000112540.1 ENSMUSG00000112540 ENSMUST00000217840 Gm47461 lincRNA Interval_51071 chr14 21985047 21986227 + 0 NA exon (ENSMUSG00000039081.10, exon 3 of 3) protein_coding-exon (ENSMUSG00000039081.10, exon 3 of 3) 3964 ENSMUSG00000039081.10 ENSMUSG00000039081 ENSMUST00000043409 Zfp503 protein_coding Interval_142726 chr6 145175197 145177045 + 0 NA exon (ENSMUSG00000043541.16, exon 12 of 12) protein_coding-exon (ENSMUSG00000043541.16, exon 12 of 12) -6154 ENSMUSG00000086863.1 ENSMUSG00000086863 ENSMUST00000141307 Gm15543 antisense Interval_128676 chr5 114664315 114665330 + 0 NA Intergenic Intergenic -19923 ENSMUSG00000014158.12 ENSMUSG00000014158 ENSMUST00000212469 Trpv4 protein_coding Interval_9448 chr1 157237157 157237379 + 0 NA intron (ENSMUSG00000070565.11, intron 3 of 17) protein_coding-intron (ENSMUSG00000070565.11, intron 3 of 17) -6077 ENSMUSG00000070565.11 ENSMUSG00000070565 ENSMUST00000143080 Rasal2 protein_coding Interval_73807 chr17 43952152 43953321 + 0 NA promoter-TSS (ENSMUSG00000039601.16) protein_coding-promoter-TSS (ENSMUSG00000039601.16) 9105 ENSMUSG00000088576.1 ENSMUSG00000088576 ENSMUST00000157951 Gm24532 misc_RNA Interval_150739 chr7 114032855 114034537 + 0 NA intron (ENSMUSG00000038156.16, intron 13 of 15) protein_coding-intron (ENSMUSG00000038156.16, intron 13 of 15) -53202 ENSMUSG00000110248.1 ENSMUSG00000110248 ENSMUST00000210417 Gm45615 antisense Interval_145835 chr7 39867578 39867789 + 0 NA intron (ENSMUSG00000102085.2, intron 3 of 3) lincRNA-intron (ENSMUSG00000102085.2, intron 3 of 3) 43287 ENSMUSG00000102085.2 ENSMUSG00000102085 ENSMUST00000209360 4930435C17Rik lincRNA Interval_104176 chr3 59703920 59704129 + 0 NA Intergenic Intergenic -25766 ENSMUSG00000090527.2 ENSMUSG00000090527 ENSMUST00000168156 Aadacl2fm2 protein_coding Interval_8198 chr1 136444014 136445465 + 0 NA Intergenic Intergenic 12337 ENSMUSG00000026404.12 ENSMUSG00000026404 ENSMUST00000149783 Ddx59 protein_coding Interval_11706 chr1 184807219 184808208 + 0 NA intron (ENSMUSG00000026621.13, intron 1 of 8) protein_coding-intron (ENSMUSG00000026621.13, intron 1 of 6) 1140 ENSMUSG00000026621.13 ENSMUSG00000026621 ENSMUST00000189492 Mtarc1 protein_coding Interval_137877 chr6 83107449 83109668 + 0 NA promoter-TSS (ENSMUSG00000030037.9) protein_coding-promoter-TSS (ENSMUSG00000030037.9) 496 ENSMUSG00000087578.1 ENSMUSG00000087578 ENSMUST00000154457 Ccdc142os antisense Interval_69849 chr16 97522414 97524241 + 0 NA Intergenic Intergenic -8554 ENSMUSG00000022938.8 ENSMUSG00000022938 ENSMUST00000232018 Fam3b protein_coding Interval_133061 chr5 149583584 149583800 + 0 NA intron (ENSMUSG00000029658.17, intron 13 of 22) protein_coding-intron (ENSMUSG00000029658.17, intron 13 of 22) -45662 ENSMUSG00000107132.1 ENSMUSG00000107132 ENSMUST00000202188 Gm15997 antisense Interval_34904 chr12 13209018 13209381 + 0 NA Intergenic Intergenic 39964 ENSMUSG00000037149.10 ENSMUSG00000037149 ENSMUST00000221623 Ddx1 protein_coding Interval_171087 chr9 114473127 114473990 + 0 NA intron (ENSMUSG00000045594.10, intron 14 of 14) protein_coding-intron (ENSMUSG00000045594.10, intron 15 of 15) 31358 ENSMUSG00000047898.7 ENSMUSG00000047898 ENSMUST00000215959 Ccr4 protein_coding Interval_46283 chr13 63356132 63356830 + 0 NA intron (ENSMUSG00000021461.17, intron 6 of 13) protein_coding-intron (ENSMUSG00000021461.17, intron 6 of 15) 24564 ENSMUSG00000090232.1 ENSMUSG00000090232 ENSMUST00000159296 Gm16132 sense_intronic Interval_157580 chr8 71521311 71521982 + 0 NA intron (ENSMUSG00000108900.1, intron 3 of 3) protein_coding-intron (ENSMUSG00000108900.1, intron 3 of 3) -1928 ENSMUSG00000110619.1 ENSMUSG00000110619 ENSMUST00000212909 Gm7850 processed_pseudogene Interval_120715 chr4 150241670 150242239 + 0 NA exon (ENSMUSG00000063524.13, exon 3 of 3) protein_coding-exon (ENSMUSG00000063524.13, exon 3 of 3) -5506 ENSMUSG00000063524.13 ENSMUSG00000063524 ENSMUST00000136310 Eno1 protein_coding Interval_91782 chr2 49521674 49522068 + 0 NA intron (ENSMUSG00000069495.12, intron 3 of 13) protein_coding-intron (ENSMUSG00000069495.12, intron 3 of 13) -7004 ENSMUSG00000069495.12 ENSMUSG00000069495 ENSMUST00000152485 Epc2 protein_coding Interval_11173 chr1 179847453 179848524 + 0 NA Intergenic Intergenic 44612 ENSMUSG00000073486.2 ENSMUSG00000073486 ENSMUST00000097454 Gm10518 antisense Interval_147977 chr7 76127896 76128243 + 0 NA Intergenic Intergenic 73975 ENSMUSG00000108467.1 ENSMUSG00000108467 ENSMUST00000206208 Gm45211 TEC Interval_61444 chr15 81663308 81664428 + 0 NA promoter-TSS (ENSMUSG00000022394.14) protein_coding-promoter-TSS (ENSMUSG00000022394.14) -7469 ENSMUSG00000116516.1 ENSMUSG00000116516 ENSMUST00000230244 Gm49444 processed_pseudogene Interval_2452 chr1 39463004 39463426 + 0 NA intron (ENSMUSG00000003134.10, intron 1 of 18) protein_coding-intron (ENSMUSG00000003134.10, intron 1 of 19) -43283 ENSMUSG00000102607.1 ENSMUSG00000102607 ENSMUST00000191698 Gm37265 TEC Interval_9314 chr1 156108024 156108914 + 0 NA intron (ENSMUSG00000015484.3, intron 1 of 4) protein_coding-intron (ENSMUSG00000015484.3, intron 1 of 4) 72697 ENSMUSG00000050565.16 ENSMUSG00000050565 ENSMUST00000125371 Tor1aip2 protein_coding Interval_14253 chr10 29805349 29805934 + 0 NA Intergenic Intergenic 24230 ENSMUSG00000111427.1 ENSMUSG00000111427 ENSMUST00000215034 Gm6390 processed_pseudogene Interval_71369 chr17 22738629 22740483 + 0 NA promoter-TSS (ENSMUSG00000098164.2) lincRNA-promoter-TSS (ENSMUSG00000098164.2) -389 ENSMUSG00000098164.2 ENSMUSG00000098164 ENSMUST00000182063 Gm5493 lincRNA Interval_124459 chr5 48328576 48328794 + 0 NA intron (ENSMUSG00000029089.8, intron 1 of 6) protein_coding-intron (ENSMUSG00000029089.8, intron 1 of 6) 4073 ENSMUSG00000106604.1 ENSMUSG00000106604 ENSMUST00000197312 Gm42535 TEC Interval_41414 chr12 113578200 113579080 + 0 NA exon (ENSMUSG00000076633.7, exon 2 of 2) IG_V_gene-exon (ENSMUSG00000076633.7, exon 2 of 2) 350 ENSMUSG00000076633.7 ENSMUSG00000076633 ENSMUST00000103442 Ighv5-2 IG_V_gene Interval_6826 chr1 119912950 119913734 + 0 NA promoter-TSS (ENSMUSG00000036975.5) protein_coding-promoter-TSS (ENSMUSG00000036975.5) -134 ENSMUSG00000036975.5 ENSMUSG00000036975 ENSMUST00000037906 Tmem177 protein_coding Interval_143487 chr7 8288784 8288995 + 0 NA promoter-TSS (ENSMUSG00000092624.2) transcribed_unprocessed_pseudogene-promoter-TSS (ENSMUSG00000092624.2) 215 ENSMUSG00000092624.2 ENSMUSG00000092624 ENSMUST00000210597 Gm3654 transcribed_unprocessed_pseudogene Interval_112227 chr4 36949889 36952188 + 0 NA promoter-TSS (ENSMUSG00000045083.14) protein_coding-promoter-TSS (ENSMUSG00000045083.14) -1928 ENSMUSG00000084898.1 ENSMUSG00000084898 ENSMUST00000144029 Gm12371 lincRNA Interval_68114 chr16 65242213 65242430 + 0 NA Intergenic Intergenic -45872 ENSMUSG00000116833.1 ENSMUSG00000116833 ENSMUST00000232619 Gm9584 processed_pseudogene Interval_146883 chr7 54734040 54734389 + 0 NA Intergenic Intergenic -101284 ENSMUSG00000063297.7 ENSMUSG00000063297 ENSMUST00000082373 Luzp2 protein_coding Interval_3999 chr1 65979326 65980171 + 0 NA Intergenic Intergenic 53177 ENSMUSG00000081623.1 ENSMUSG00000081623 ENSMUST00000119367 Gm8809 processed_pseudogene Interval_114196 chr4 66742937 66744020 + 0 NA Intergenic Intergenic -17934 ENSMUSG00000082053.1 ENSMUSG00000082053 ENSMUST00000118844 Gm11220 processed_pseudogene Interval_148731 chr7 84722593 84722969 + 0 NA intron (ENSMUSG00000085236.3, intron 1 of 4) antisense-intron (ENSMUSG00000085236.3, intron 1 of 4) -30346 ENSMUSG00000085236.3 ENSMUSG00000085236 ENSMUST00000168496 2610206C17Rik antisense Interval_154437 chr8 16992888 16993910 + 0 NA intron (ENSMUSG00000060924.15, intron 3 of 10) protein_coding-intron (ENSMUSG00000060924.15, intron 3 of 69) -77217 ENSMUSG00000109625.1 ENSMUSG00000109625 ENSMUST00000210736 3110080E11Rik TEC Interval_38559 chr12 80132342 80133383 + 0 NA promoter-TSS (ENSMUSG00000097729.2) processed_transcript-promoter-TSS (ENSMUSG00000097729.2) -266 ENSMUSG00000097729.2 ENSMUSG00000097729 ENSMUST00000180643 2310015A10Rik processed_transcript Interval_162151 chr8 125539225 125539895 + 0 NA intron (ENSMUSG00000001995.9, intron 1 of 22) protein_coding-intron (ENSMUSG00000001995.9, intron 1 of 21) 30248 ENSMUSG00000001995.9 ENSMUSG00000001995 ENSMUST00000212604 Sipa1l2 protein_coding Interval_110227 chr3 154611299 154613364 + 0 NA TTS (ENSMUSG00000028199.18) protein_coding-TTS (ENSMUSG00000028199.18) -3553 ENSMUSG00000028199.18 ENSMUSG00000028199 ENSMUST00000195292 Cryz protein_coding Interval_19600 chr10 105394138 105394541 + 0 NA promoter-TSS (ENSMUSG00000112512.1) TEC-promoter-TSS (ENSMUSG00000112512.1) -53 ENSMUSG00000112512.1 ENSMUSG00000112512 ENSMUST00000219124 Gm48203 TEC Interval_153423 chr7 144628316 144629077 + 0 NA intron (ENSMUSG00000031075.19, intron 12 of 25) protein_coding-intron (ENSMUSG00000031075.19, intron 12 of 24) -46233 ENSMUSG00000031077.7 ENSMUSG00000031077 ENSMUST00000033394 Fadd protein_coding Interval_77774 chr18 3413303 3413668 + 0 NA intron (ENSMUSG00000024231.15, intron 3 of 20) protein_coding-intron (ENSMUSG00000024231.15, intron 3 of 19) 30253 ENSMUSG00000024231.15 ENSMUSG00000024231 ENSMUST00000159443 Cul2 protein_coding Interval_166889 chr9 63715630 63716682 + 0 NA intron (ENSMUSG00000032402.12, intron 1 of 8) protein_coding-intron (ENSMUSG00000032402.12, intron 1 of 8) -4187 ENSMUSG00000032402.12 ENSMUSG00000032402 ENSMUST00000137065 Smad3 protein_coding Interval_57787 chr15 19978710 19979259 + 0 NA Intergenic Intergenic 39881 ENSMUSG00000115830.1 ENSMUSG00000115830 ENSMUST00000226614 Gm49176 processed_pseudogene Interval_120720 chr4 150260010 150261297 + 0 NA Intergenic Intergenic 13193 ENSMUSG00000063524.13 ENSMUSG00000063524 ENSMUST00000136310 Eno1 protein_coding Interval_129382 chr5 119640530 119641734 + 0 NA intron (ENSMUSG00000087516.7, intron 1 of 2) antisense-intron (ENSMUSG00000087516.7, intron 1 of 2) -5002 ENSMUSG00000085345.1 ENSMUSG00000085345 ENSMUST00000154997 Gm16064 lincRNA Interval_69520 chr16 94010294 94011247 + 0 NA promoter-TSS (ENSMUSG00000116947.1) lincRNA-promoter-TSS (ENSMUSG00000116947.1) -671 ENSMUSG00000116947.1 ENSMUSG00000116947 ENSMUST00000231382 2410003I16Rik lincRNA Interval_139488 chr6 100498271 100499501 + 0 NA intron (ENSMUSG00000107663.1, intron 1 of 1) lincRNA-intron (ENSMUSG00000107663.1, intron 1 of 1) 371 ENSMUSG00000107663.1 ENSMUSG00000107663 ENSMUST00000203242 Gm44107 lincRNA Interval_134994 chr6 34398385 34398684 + 0 NA Intergenic Intergenic 8935 ENSMUSG00000061758.13 ENSMUSG00000061758 ENSMUST00000144072 Akr1b10 protein_coding Interval_50052 chr13 120277775 120278205 + 0 NA Intergenic Intergenic 14876 ENSMUSG00000095071.2 ENSMUSG00000095071 ENSMUST00000179905 AF067061 protein_coding Interval_53831 chr14 62434827 62435188 + 0 NA intron (ENSMUSG00000021933.11, intron 3 of 16) protein_coding-intron (ENSMUSG00000021933.11, intron 3 of 16) 21279 ENSMUSG00000021933.11 ENSMUSG00000021933 ENSMUST00000128573 Gucy1b2 protein_coding Interval_97256 chr2 132686570 132687579 + 0 NA intron (ENSMUSG00000044991.10, intron 1 of 2) protein_coding-intron (ENSMUSG00000044991.10, intron 1 of 2) -3083 ENSMUSG00000044991.10 ENSMUSG00000044991 ENSMUST00000141460 Shld1 protein_coding Interval_47341 chr13 81689386 81690033 + 0 NA intron (ENSMUSG00000035834.11, intron 3 of 7) protein_coding-intron (ENSMUSG00000035834.11, intron 3 of 7) -2424 ENSMUSG00000035834.11 ENSMUSG00000035834 ENSMUST00000160331 Polr3g protein_coding Interval_119713 chr4 139402988 139403830 + 0 NA intron (ENSMUSG00000066036.14, intron 17 of 105) protein_coding-intron (ENSMUSG00000066036.14, intron 17 of 105) 22750 ENSMUSG00000066036.14 ENSMUSG00000066036 ENSMUST00000135534 Ubr4 protein_coding Interval_129870 chr5 122825042 122825794 + 0 NA Intergenic Intergenic -4124 ENSMUSG00000029472.13 ENSMUSG00000029472 ENSMUST00000197331 Anapc5 protein_coding Interval_56856 chr14 122462834 122466079 + 0 NA exon (ENSMUSG00000041703.7, exon 1 of 2) protein_coding-exon (ENSMUSG00000041703.7, exon 1 of 2) -4435 ENSMUSG00000041703.7 ENSMUSG00000041703 ENSMUST00000143084 Zic5 protein_coding Interval_22040 chr11 5942279 5943776 + 0 NA intron (ENSMUSG00000041798.15, intron 1 of 9) protein_coding-intron (ENSMUSG00000041798.15, intron 1 of 9) -16277 ENSMUSG00000002741.9 ENSMUSG00000002741 ENSMUST00000143834 Ykt6 protein_coding Interval_41854 chr13 3554810 3555897 + 0 NA TTS (ENSMUSG00000021218.10) protein_coding-TTS (ENSMUSG00000021218.10) 1314 ENSMUSG00000021218.10 ENSMUSG00000021218 ENSMUST00000221581 Gdi2 protein_coding Interval_15453 chr10 46833394 46833598 + 0 NA Intergenic Intergenic 5011 ENSMUSG00000065718.1 ENSMUSG00000065718 ENSMUST00000083784 Gm25650 snRNA Interval_32958 chr11 113365169 113367323 + 0 NA intron (ENSMUSG00000041654.15, intron 6 of 9) protein_coding-intron (ENSMUSG00000041654.15, intron 7 of 10) -101731 ENSMUSG00000078251.2 ENSMUSG00000078251 ENSMUST00000105048 Gm16487 pseudogene Interval_86666 chr19 42409064 42410820 + 0 NA promoter-TSS (ENSMUSG00000117728.1) antisense-promoter-TSS (ENSMUSG00000117728.1) -452 ENSMUSG00000117728.1 ENSMUSG00000117728 ENSMUST00000235253 Gm34299 antisense Interval_845 chr1 12574061 12575104 + 0 NA Intergenic Intergenic 9005 ENSMUSG00000097628.1 ENSMUSG00000097628 ENSMUST00000181461 Gm2383 processed_pseudogene Interval_100815 chr2 172679183 172679398 + 0 NA Intergenic Intergenic 128299 ENSMUSG00000028640.11 ENSMUSG00000028640 ENSMUST00000142633 Tfap2c protein_coding Interval_147854 chr7 74340980 74341672 + 0 NA intron (ENSMUSG00000025790.14, intron 1 of 1) protein_coding-intron (ENSMUSG00000025790.14, intron 4 of 9) 5905 ENSMUSG00000025790.14 ENSMUSG00000025790 ENSMUST00000129292 Slco3a1 protein_coding Interval_142236 chr6 139590268 139590645 + 0 NA intron (ENSMUSG00000030228.18, intron 2 of 6) protein_coding-intron (ENSMUSG00000030228.18, intron 1 of 1) -13251 ENSMUSG00000108147.1 ENSMUSG00000108147 ENSMUST00000203475 4930443G03Rik TEC Interval_101424 chr2 181300877 181301076 + 0 NA Intergenic Intergenic 8828 ENSMUSG00000084033.3 ENSMUSG00000084033 ENSMUST00000119008 Gm7645 processed_pseudogene Interval_45869 chr13 58637421 58637772 + 0 NA Intergenic Intergenic -26719 ENSMUSG00000021553.14 ENSMUSG00000021553 ENSMUST00000151675 Slc28a3 protein_coding Interval_129159 chr5 117909184 117909636 + 0 NA intron (ENSMUSG00000029361.18, intron 10 of 27) protein_coding-intron (ENSMUSG00000029361.18, intron 11 of 28) 30108 ENSMUSG00000098072.1 ENSMUSG00000098072 ENSMUST00000182216 Gm26995 antisense Interval_127969 chr5 109954035 109954938 + 0 NA Intergenic Intergenic 14060 ENSMUSG00000090015.8 ENSMUSG00000090015 ENSMUST00000170826 Gm15446 protein_coding Interval_57917 chr15 25386038 25386946 + 0 NA intron (ENSMUSG00000045763.8, intron 1 of 1) protein_coding-intron (ENSMUSG00000045763.8, intron 1 of 1) 27206 ENSMUSG00000045763.8 ENSMUSG00000045763 ENSMUST00000228597 Basp1 protein_coding Interval_1360 chr1 20954986 20955480 + 0 NA intron (ENSMUSG00000041809.5, intron 1 of 1) protein_coding-intron (ENSMUSG00000041809.5, intron 1 of 10) 3607 ENSMUSG00000041809.5 ENSMUSG00000041809 ENSMUST00000038447 Efhc1 protein_coding Interval_49953 chr13 118805835 118806158 + 0 NA Intergenic Intergenic 52418 ENSMUSG00000114868.1 ENSMUSG00000114868 ENSMUST00000224309 Gm47335 processed_pseudogene Interval_142573 chr6 143437678 143438379 + 0 NA Intergenic Intergenic 27369 ENSMUSG00000077241.1 ENSMUSG00000077241 ENSMUST00000104053 Gm23272 snoRNA Interval_91901 chr2 51137467 51137764 + 0 NA intron (ENSMUSG00000017144.8, intron 2 of 3) protein_coding-intron (ENSMUSG00000017144.8, intron 2 of 4) 11495 ENSMUSG00000017144.8 ENSMUSG00000017144 ENSMUST00000140864 Rnd3 protein_coding Interval_166695 chr9 62015134 62015743 + 0 NA intron (ENSMUSG00000032278.11, intron 1 of 4) protein_coding-intron (ENSMUSG00000032278.11, intron 1 of 7) -5156 ENSMUSG00000088743.1 ENSMUSG00000088743 ENSMUST00000158118 Gm23221 misc_RNA Interval_96145 chr2 120032836 120033118 + 0 NA promoter-TSS (ENSMUSG00000098488.7) protein_coding-promoter-TSS (ENSMUSG00000098488.7) 5420 ENSMUSG00000098789.7 ENSMUSG00000098789 ENSMUST00000129679 Jmjd7 protein_coding Interval_156479 chr8 48571464 48572421 + 0 NA intron (ENSMUSG00000031561.16, intron 2 of 26) protein_coding-intron (ENSMUSG00000031561.16, intron 2 of 28) -16629 ENSMUSG00000031561.16 ENSMUSG00000031561 ENSMUST00000211812 Tenm3 protein_coding Interval_102661 chr3 29036254 29036569 + 0 NA Intergenic Intergenic -45889 ENSMUSG00000063600.14 ENSMUSG00000063600 ENSMUST00000140288 Egfem1 protein_coding Interval_13268 chr10 13822071 13822717 + 0 NA intron (ENSMUSG00000019806.13, intron 3 of 3) protein_coding-intron (ENSMUSG00000019806.13, intron 2 of 5) 46435 ENSMUSG00000019806.13 ENSMUSG00000019806 ENSMUST00000162869 Aig1 protein_coding Interval_92832 chr2 66091601 66093150 + 0 NA intron (ENSMUSG00000026994.9, intron 2 of 5) protein_coding-intron (ENSMUSG00000026994.9, intron 7 of 10) 2849 ENSMUSG00000026994.9 ENSMUSG00000026994 ENSMUST00000153563 Galnt3 protein_coding Interval_62485 chr15 93415030 93415353 + 0 NA intron (ENSMUSG00000036167.16, intron 2 of 7) protein_coding-intron (ENSMUSG00000036167.16, intron 2 of 9) 15983 ENSMUSG00000036167.16 ENSMUSG00000036167 ENSMUST00000229721 Pphln1 protein_coding Interval_28381 chr11 75501668 75501934 + 0 NA exon (ENSMUSG00000020850.14, exon 30 of 42) protein_coding-exon (ENSMUSG00000020850.14, exon 30 of 42) -8666 ENSMUSG00000038195.6 ENSMUSG00000038195 ENSMUST00000156923 Rilp protein_coding Interval_66516 chr16 34690117 34691424 + 0 NA promoter-TSS (ENSMUSG00000022833.7) protein_coding-promoter-TSS (ENSMUSG00000022833.7) 60 ENSMUSG00000022833.7 ENSMUSG00000022833 ENSMUST00000232341 Ccdc14 protein_coding Interval_143924 chr7 17870944 17871527 + 0 NA promoter-TSS (ENSMUSG00000078793.10) protein_coding-promoter-TSS (ENSMUSG00000078793.10) -532 ENSMUSG00000078793.10 ENSMUSG00000078793 ENSMUST00000072381 Gm5155 protein_coding Interval_128930 chr5 116144289 116145364 + 0 NA intron (ENSMUSG00000043913.14, intron 8 of 13) protein_coding-intron (ENSMUSG00000043913.14, intron 8 of 13) 21212 ENSMUSG00000086655.1 ENSMUSG00000086655 ENSMUST00000127792 C330018A13Rik antisense Interval_127254 chr5 101893632 101894611 + 0 NA intron (ENSMUSG00000043940.15, intron 33 of 64) protein_coding-intron (ENSMUSG00000043940.15, intron 36 of 66) 56669 ENSMUSG00000092354.7 ENSMUSG00000092354 ENSMUST00000174312 Gm20548 antisense Interval_130386 chr5 127215828 127216291 + 0 NA Intergenic Intergenic -14962 ENSMUSG00000104778.1 ENSMUSG00000104778 ENSMUST00000197873 Gm43476 lincRNA Interval_146088 chr7 43796936 43798224 + 0 NA promoter-TSS (ENSMUSG00000064023.4) protein_coding-promoter-TSS (ENSMUSG00000064023.4) -4286 ENSMUSG00000064023.4 ENSMUSG00000064023 ENSMUST00000206465 Klk8 protein_coding Interval_95396 chr2 107976311 107977304 + 0 NA Intergenic Intergenic -90168 ENSMUSG00000077480.1 ENSMUSG00000077480 ENSMUST00000104292 Gm23439 snoRNA Interval_30710 chr11 96045039 96045851 + 0 NA intron (ENSMUSG00000006058.10, intron 6 of 6) protein_coding-intron (ENSMUSG00000006058.10, intron 6 of 7) 10489 ENSMUSG00000006058.10 ENSMUSG00000006058 ENSMUST00000156394 Snf8 protein_coding Interval_109703 chr3 146121366 146122049 + 0 NA promoter-TSS (ENSMUSG00000036853.5) protein_coding-promoter-TSS (ENSMUSG00000036853.5) -5453 ENSMUSG00000065937.1 ENSMUSG00000065937 ENSMUST00000084003 Gm25627 snRNA Interval_11081 chr1 179222073 179223331 + 0 NA intron (ENSMUSG00000055067.15, intron 1 of 8) protein_coding-intron (ENSMUSG00000055067.15, intron 1 of 8) 295303 ENSMUSG00000055067.15 ENSMUSG00000055067 ENSMUST00000194237 Smyd3 protein_coding Interval_12871 chr10 7124762 7125602 + 0 NA intron (ENSMUSG00000015202.13, intron 5 of 5) protein_coding-intron (ENSMUSG00000015202.13, intron 12 of 12) 10324 ENSMUSG00000015202.13 ENSMUSG00000015202 ENSMUST00000015346 Cnksr3 protein_coding Interval_101699 chr3 9003725 9004876 + 0 NA intron (ENSMUSG00000027506.15, intron 1 of 3) protein_coding-intron (ENSMUSG00000027506.15, intron 1 of 6) 178 ENSMUSG00000027506.15 ENSMUSG00000027506 ENSMUST00000155450 Tpd52 protein_coding Interval_72816 chr17 32352847 32353016 + 0 NA Intergenic Intergenic -16378 ENSMUSG00000002625.10 ENSMUSG00000002625 ENSMUST00000235387 Akap8l protein_coding Interval_91792 chr2 49619010 49620721 + 0 NA intron (ENSMUSG00000026764.15, intron 1 of 25) protein_coding-intron (ENSMUSG00000026764.15, intron 1 of 25) -60634 ENSMUSG00000082879.1 ENSMUSG00000082879 ENSMUST00000120607 Gm13525 processed_pseudogene Interval_50762 chr14 19282398 19282842 + 0 NA exon (ENSMUSG00000114304.1, exon 3 of 3) lincRNA-exon (ENSMUSG00000114304.1, exon 3 of 3) 8589 ENSMUSG00000114919.1 ENSMUSG00000114919 ENSMUST00000225025 Gm6122 processed_pseudogene